496 304 58 31 chr1 321 563 -282193101 - MIR SINE MIR -10 252 1 2182 121 7 0 chr1 1713 2019 -282191645 + AluSx SINE Alu 1 308 -4 5087 58 20 1 chr1 2481 3389 -282190275 - L1PA7 LINE L1 -519 5635 4716 4071 52 2 2 chr1 3389 3888 -282189776 + L1PA7 LINE L1 5652 6150 -4 283 320 96 17 chr1 4183 4361 -282189303 - MIR SINE MIR -42 220 29 914 134 0 0 chr1 4568 4695 -282188969 - FLAM_C SINE Alu -16 127 1 2161 114 0 14 chr1 6129 6426 -282187238 + AluSx SINE Alu 1 293 -19 196 242 16 32 chr1 10004 10066 -282183598 - L2 LINE L2 -7 3265 3205 208 114 43 43 chr1 11248 11318 -282182346 + (CATA)n Simple_repeat Simple_repeat 1 70 0 2950 176 42 8 chr1 12040 12570 -282181094 + MER44D DNA MER2_type 2 604 -1 4751 164 19 23 chr1 15095 15995 -282177669 + L1MB3 LINE L1 5286 6181 -2 24 0 0 0 chr1 16786 16810 -282176854 + AT_rich Low_complexity Low_complexity 1 24 0 612 180 78 7 chr1 16857 16994 -282176670 + MLT1C LTR MaLR 336 465 -2 512 278 83 40 chr1 18807 19156 -282174508 + L1 LINE L1 2955 3318 -2828 257 150 0 17 chr1 19159 19219 -282174445 + L1MC5 LINE L1 7473 7531 -430 380 236 21 62 chr1 19306 19450 -282174214 + L1ME3A LINE L1 5962 6099 -71 25 0 0 0 chr1 19523 19548 -282174116 + AT_rich Low_complexity Low_complexity 1 25 0 2977 212 9 3 chr1 19613 20268 -282173396 + L1 LINE L1 4623 5281 -865 245 88 0 0 chr1 20240 20274 -282173390 + L1P LINE L1 5254 5287 -885 * 352 303 74 6 chr1 21024 21186 -282172478 - MER58A DNA MER1_type -51 173 1 437 246 136 35 chr1 21611 21810 -282171854 + Charlie8 DNA MER1_type 94 276 -2141 521 261 118 29 chr1 22048 22286 -282171378 + MLT1I LTR MaLR 118 376 -33 1119 239 0 0 chr1 22713 22931 -282170733 + Tigger7 DNA MER2_type 11 228 -505 25 31 0 0 chr1 25173 25205 -282168459 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 25457 25480 -282168184 + AT_rich Low_complexity Low_complexity 1 23 0 218 239 0 45 chr1 28674 28762 -282164902 + (CGGGG)n Simple_repeat Simple_repeat 1 84 0 201 167 0 0 chr1 29360 29396 -282164268 + (TA)n Simple_repeat Simple_repeat 2 37 0 307 198 25 12 chr1 29856 29937 -282163727 - L1M4 LINE L1 -1042 5104 5023 667 260 41 18 chr1 29945 30114 -282163550 - MER41D LTR ERV1 -10 547 375 1783 106 4 12 chr1 30150 30396 -282163268 - AluSx SINE Alu -66 246 3 1116 258 153 50 chr1 30729 31199 -282162465 - HAL1 LINE L1 -655 1852 1432 1323 236 32 43 chr1 31199 31568 -282162096 + MLT1A1 LTR MaLR 1 365 0 1116 258 153 50 chr1 31568 31982 -282161682 - HAL1 LINE L1 -1075 1432 877 311 319 36 7 chr1 32021 32159 -282161505 - HAL1 LINE L1 -1745 762 621 245 286 12 36 chr1 33656 33740 -282159924 + CT-rich Low_complexity Low_complexity 6 87 0 1850 136 29 0 chr1 33870 34188 -282159476 - AluSx SINE Alu 0 326 1 217 297 0 0 chr1 34740 34804 -282158860 - MIR3 SINE MIR -37 171 108 309 294 75 20 chr1 35894 36040 -282157624 - MLT1K LTR MaLR -15 573 420 309 186 0 0 chr1 36046 36116 -282157548 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 208 257 18 0 chr1 36202 36315 -282157349 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 246 255 61 20 chr1 36757 36855 -282156809 - L2 LINE L2 -155 3117 3016 456 239 169 109 chr1 37601 37986 -282155678 + LTR16C LTR ERVL 69 476 -15 873 106 53 15 chr1 38164 38296 -282155368 - FLAM_C SINE Alu -6 137 1 789 218 24 12 chr1 38474 38639 -282155025 - MER58A DNA MER1_type -18 206 40 4840 225 125 29 chr1 38646 40449 -282153215 + L1M4b LINE L1 12 2002 -4853 333 257 0 0 chr1 40449 40706 -282152958 + (CA)n Simple_repeat Simple_repeat 1 257 0 1028 301 32 9 chr1 40723 41296 -282152368 + L1M4b LINE L1 1983 2723 -4415 935 167 108 39 chr1 41296 41500 -282152164 + L1MB8 LINE L1 5894 6111 -67 361 282 8 17 chr1 42611 42728 -282150936 + MER5A DNA MER1_type 9 124 -65 340 306 70 0 chr1 42759 42916 -282150748 + MIR SINE MIR 78 245 -17 1883 158 75 3 chr1 45085 45445 -282148219 + MLT1B LTR MaLR 1 386 -4 250 173 0 0 chr1 46029 46088 -282147576 + Charlie5 DNA MER1_type 65 123 -2489 3490 169 38 14 chr1 47068 47724 -282145940 + L1MC1 LINE L1 5662 6333 0 579 245 80 0 chr1 48073 48224 -282145440 + MER103 DNA DNA 2 164 -2 281 292 0 14 chr1 48959 49031 -282144633 - MIR SINE MIR -186 76 6 1735 189 113 0 chr1 50655 51010 -282142654 - MSTD LTR MaLR 0 396 2 5024 21 0 0 chr1 51744 52307 -282141357 - L1PA3 LINE L1 0 6155 5593 827 180 0 0 chr1 53933 54061 -282139603 - FLAM_A SINE Alu -5 128 1 2099 98 0 3 chr1 54067 54362 -282139302 - AluSx SINE Alu -18 294 1 29 0 0 0 chr1 54454 54483 -282139181 + AT_rich Low_complexity Low_complexity 1 29 0 262 316 7 37 chr1 56260 56396 -282137268 + (TATG)n Simple_repeat Simple_repeat 2 133 0 427 290 5 43 chr1 56426 56612 -282137052 + (TG)n Simple_repeat Simple_repeat 2 180 0 252 383 70 11 chr1 59128 59413 -282134251 - MARNA DNA Mariner -110 476 175 192 357 0 0 chr1 60018 60088 -282133576 - L3 LINE CR1 0 1577 1508 484 307 68 49 chr1 60195 60811 -282132853 - L1ME4a LINE L1 -11 6110 5483 237 33 0 0 chr1 61227 61257 -282132407 + (T)n Simple_repeat Simple_repeat 1 30 0 1988 126 7 7 chr1 62887 63181 -282130483 - AluSx SINE Alu -18 294 1 702 170 0 50 chr1 63486 63627 -282130037 - AluJo SINE Alu -177 135 2 808 251 6 0 chr1 63918 64101 -282129563 - LTR2 LTR ERV1 0 449 266 354 301 6 81 chr1 64097 64270 -282129394 - LTR2 LTR ERV1 -289 160 1 * 287 303 8 17 chr1 64747 64866 -282128798 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 * 553 118 69 22 chr1 64819 65281 -282128383 + (TAGA)n Simple_repeat Simple_repeat 1 483 0 781 303 141 17 chr1 65842 66324 -282127340 - MLT1K LTR MaLR -9 579 38 263 242 84 21 chr1 68694 68789 -282124875 + MIR SINE MIR 66 166 -96 611 229 35 24 chr1 69410 69580 -282124084 - MLT1B LTR MaLR -35 355 184 22 35 0 0 chr1 71374 71403 -282122261 + AT_rich Low_complexity Low_complexity 1 29 0 1443 134 0 67 chr1 72972 73286 -282120378 - AluSx SINE Alu -7 305 13 287 155 0 40 chr1 73304 73388 -282120276 - Alu SINE Alu -6 296 243 321 205 12 48 chr1 74001 74084 -282119580 + HERV16 LTR ERVL 349 428 -4568 747 238 38 21 chr1 74759 74994 -282118670 - L1MB5 LINE L1 -8 6166 5928 292 300 129 24 chr1 75127 75297 -282118367 - L1MB5 LINE L1 -540 5638 5451 333 203 16 0 chr1 77678 77742 -282115922 - AluSc SINE Alu -117 182 118 677 285 77 8 chr1 77757 78122 -282115542 - L1MB5 LINE L1 -2389 3757 3368 979 163 6 17 chr1 82180 82402 -282111262 - AluJb SINE Alu 0 312 137 192 125 0 0 chr1 82460 82492 -282111172 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1946 93 11 14 chr1 82493 82772 -282110892 - AluSx SINE Alu -27 285 8 895 271 118 34 chr1 82783 83197 -282110467 - L1ME1 LINE L1 -44 6122 5674 765 205 0 54 chr1 83199 83384 -282110280 + MER4A LTR ERV1 1 175 -489 1636 126 13 82 chr1 83429 83689 -282109975 + MER4A LTR ERV1 369 605 -59 2458 43 0 3 chr1 83689 83989 -282109675 - AluY SINE Alu -12 299 1 1636 126 13 82 chr1 83989 84045 -282109619 + MER4A LTR ERV1 605 663 -1 1391 202 99 69 chr1 84046 84384 -282109280 - L1ME1 LINE L1 -491 5675 5349 1964 135 3 0 chr1 84384 84673 -282108991 - AluSx SINE Alu -17 295 6 1391 202 99 69 chr1 84673 84747 -282108917 - L1ME1 LINE L1 -817 5349 5279 1964 129 0 16 chr1 84747 85057 -282108607 - AluSx SINE Alu -7 305 1 1391 202 99 69 chr1 85057 85398 -282108266 - L1ME1 LINE L1 -887 5279 4897 1308 114 0 0 chr1 85403 85579 -282108085 + AluSg SINE Alu 1 176 -134 516 321 117 14 chr1 87157 87515 -282106149 - L2 LINE L2 -42 3271 2877 429 243 7 86 chr1 87634 87774 -282105890 - MER63 DNA MER1_type -307 755 1 249 232 0 0 chr1 87952 88021 -282105643 + (TG)n Simple_repeat Simple_repeat 1 69 0 449 270 0 6 chr1 88046 88224 -282105440 + (TG)n Simple_repeat Simple_repeat 1 177 0 218 219 0 0 chr1 88226 88267 -282105397 + (TATG)n Simple_repeat Simple_repeat 4 44 0 351 274 17 0 chr1 88272 88447 -282105217 + (TG)n Simple_repeat Simple_repeat 1 178 0 300 272 58 0 chr1 88448 88551 -282105113 + (CATG)n Simple_repeat Simple_repeat 1 109 0 297 203 121 18 chr1 92976 93069 -282100595 + MIR SINE MIR 64 162 -46 750 267 70 47 chr1 93386 93808 -282099856 - L1MEc LINE L1 -5497 899 465 1850 155 3 10 chr1 93808 94117 -282099547 - AluSp SINE Alu -1 312 6 750 267 70 47 chr1 94117 94139 -282099525 - L1MEc LINE L1 -5931 465 445 205 203 95 40 chr1 95875 95949 -282097715 - L2 LINE L2 -4 3268 3191 272 294 43 80 chr1 96141 96328 -282097336 + L2 LINE L2 2993 3172 -100 195 315 128 20 chr1 96793 96942 -282096722 + MIR SINE MIR 76 240 -22 256 329 0 0 chr1 99781 99860 -282093804 - L2 LINE L2 0 3272 3194 2174 108 10 0 chr1 100027 100333 -282093331 + AluSx SINE Alu 1 309 -3 1361 93 0 0 chr1 100333 100515 -282093149 + AluSg/x SINE Alu 126 307 -5 349 320 186 8 chr1 100528 100808 -282092856 - L2 LINE L2 -273 3040 2718 248 378 139 7 chr1 100891 101042 -282092622 - L2 LINE L2 -781 2533 2363 244 43 21 43 chr1 103700 103747 -282089917 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1361 171 47 18 chr1 103755 104029 -282089635 - AluJo SINE Alu -30 282 1 516 318 0 30 chr1 107793 108172 -282085492 + (TG)n Simple_repeat Simple_repeat 1 367 0 419 343 0 4 chr1 108196 108505 -282085159 + (TG)n Simple_repeat Simple_repeat 1 307 0 2022 102 11 0 chr1 111512 111796 -282081868 - AluSx SINE Alu -24 288 2 211 204 0 0 chr1 113449 113493 -282080171 + GA-rich Low_complexity Low_complexity 2 45 0 198 0 0 0 chr1 115024 115046 -282078618 + (A)n Simple_repeat Simple_repeat 1 22 0 191 376 118 12 chr1 117802 117972 -282075692 + MIR SINE MIR 51 238 -24 727 224 12 0 chr1 119541 119711 -282073953 - L1MB4 LINE L1 -2 6178 6007 201 147 0 0 chr1 119844 119878 -282073786 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 4867 244 61 28 chr1 119881 121895 -282071769 - L1 LINE L1 -1204 4942 2864 10281 124 8 6 chr1 123148 123412 -282070252 - L1PA7 LINE L1 -5 6464 6202 1941 108 64 3 chr1 123412 123707 -282069957 - AluSp SINE Alu 0 313 1 10281 124 8 6 chr1 123707 125808 -282067856 - L1PA7 LINE L1 -267 6202 4094 5405 246 31 34 chr1 125817 127647 -282066017 - L1PA7 LINE L1 -4639 1812 10 725 336 22 47 chr1 127882 128331 -282065333 + L1MC4a LINE L1 5491 5928 -1880 388 251 17 62 chr1 128549 128728 -282064936 - L1M4 LINE L1 -2554 3592 3422 626 203 5 26 chr1 128773 129143 -282064521 + GA-rich Low_complexity Low_complexity 1 362 0 2451 156 13 5 chr1 129420 129811 -282063853 + MSTD LTR MaLR 1 394 -2 801 86 19 0 chr1 130090 130196 -282063468 + BSR/Beta Satellite Satellite 1 107 -64 466 275 69 12 chr1 130230 130390 -282063274 + MIR SINE MIR 27 195 -67 284 191 87 87 chr1 130391 130465 -282063199 - MLT1I LTR MaLR -1 408 332 2035 121 0 43 chr1 130465 130788 -282062876 - AluY SINE Alu -2 309 1 284 191 87 87 chr1 130788 130839 -282062825 - MLT1I LTR MaLR -76 333 283 494 141 0 0 chr1 130850 130921 -282062743 + AluS SINE Alu 220 290 -19 302 318 64 12 chr1 131077 131250 -282062414 + LTR41 LTR ERVL 1 182 -591 2423 199 67 74 chr1 131789 132267 -282061397 - LOR1-int LTR ERV1 -2443 3888 3408 2143 99 0 7 chr1 132267 132559 -282061105 - AluSp SINE Alu -21 292 3 2423 199 67 74 chr1 132559 132648 -282061016 - LOR1-int LTR ERV1 -2923 3408 3320 1518 183 59 0 chr1 132648 132921 -282060743 + AluJb SINE Alu 1 289 -23 2423 199 67 74 chr1 132921 133393 -282060271 - LOR1-int LTR ERV1 -3011 3320 1010 1622 167 3 50 chr1 133403 133720 -282059944 + AluJo SINE Alu 3 304 -8 607 255 52 38 chr1 133747 133959 -282059705 - LTR57-int LTR ERVL -4768 575 361 790 122 0 0 chr1 133959 134066 -282059598 + AluSq/x SINE Alu 1 107 -205 2246 93 3 3 chr1 134972 135283 -282058381 + AluY SINE Alu 1 311 0 314 311 0 19 chr1 135678 135784 -282057880 + MER65-int LTR ERV1 2417 2520 -3811 253 271 0 0 chr1 135941 136000 -282057664 + MER65-int LTR ERV1 733 791 -4080 1830 115 11 7 chr1 136014 136301 -282057363 - AluY SINE Alu -23 288 1 304 26 0 0 chr1 136302 136341 -282057323 + HERVK9 LTR ERVK 5763 5801 -115 * 2090 120 3 6 chr1 136336 136661 -282057003 - HERVK9 LTR ERVK -1010 4906 4583 1886 30 0 0 chr1 136662 136892 -282056772 - HERVK9 LTR ERVK -1976 3940 3711 11634 63 9 2 chr1 136892 138410 -282055254 - HERVK9 LTR ERVK -3130 2786 1259 4515 58 8 3 chr1 138402 138991 -282054673 - HERVK9 LTR ERVK -5324 592 1 * 3816 86 24 4 chr1 138991 139492 -282054172 - MER9 LTR ERVK 0 511 1 2527 39 0 7 chr1 139814 140120 -282053544 - AluY SINE Alu -7 304 1 300 102 0 85 chr1 140463 140522 -282053142 + Charlie8 DNA MER1_type 103 156 -2261 2219 183 136 66 chr1 141003 141730 -282051934 + L1MC3 LINE L1 7001 7778 -7 1779 167 0 3 chr1 141734 142034 -282051630 + AluJb SINE Alu 1 299 -13 464 254 176 5 chr1 142155 142348 -282051316 - MER67A LTR ERV1 -317 226 1 225 264 271 0 chr1 142464 142593 -282051071 - L2 LINE L2 -5 3267 3104 2056 70 45 7 chr1 143294 143581 -282050083 + AluSq SINE Alu 1 298 -15 692 212 72 14 chr1 143762 144067 -282049597 - MLT1B LTR MaLR -17 373 16 869 236 39 19 chr1 144174 144432 -282049232 + MLT1A2 LTR MaLR 80 342 -32 457 166 12 0 chr1 144432 144519 -282049145 + MER2 DNA MER2_type 1 87 -152 440 312 70 10 chr1 146461 146660 -282047004 + L2 LINE L2 3059 3269 -44 203 152 22 0 chr1 152374 152420 -282041244 + GA-rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr1 153180 153209 -282040455 + GC_rich Low_complexity Low_complexity 1 29 0 2307 60 17 0 chr1 154441 154741 -282038923 - AluSp SINE Alu -8 305 1 2383 63 3 3 chr1 158274 158576 -282035088 + AluY SINE Alu 1 302 -9 37 23 0 0 chr1 160495 160539 -282033125 + GC_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr1 160557 160588 -282033076 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 162906 162927 -282030737 + GC_rich Low_complexity Low_complexity 1 21 0 208 282 26 0 chr1 166242 166320 -282027344 + GA-rich Low_complexity Low_complexity 2 81 0 534 258 94 0 chr1 166424 166583 -282027081 - MIR SINE MIR -29 233 60 234 169 80 0 chr1 169451 169529 -282024135 + MLT1B LTR MaLR 287 452 -15 598 146 0 38 chr1 170042 170200 -282023464 + (GGGA)n Simple_repeat Simple_repeat 3 154 0 696 149 50 25 chr1 170580 170701 -282022963 + FLAM_A SINE Alu 13 136 -6 196 224 134 0 chr1 170859 170926 -282022738 + L2 LINE L2 1715 1790 -1524 201 222 0 0 chr1 171180 171243 -282022421 + (CA)n Simple_repeat Simple_repeat 1 63 0 194 105 26 0 chr1 171578 171616 -282022048 + G-rich Low_complexity Low_complexity 3 41 0 349 314 0 0 chr1 174564 174666 -282018998 + (CA)n Simple_repeat Simple_repeat 2 103 0 554 173 0 53 chr1 177539 177672 -282015992 - L1M4 LINE L1 -1286 4860 4735 2057 98 20 7 chr1 177688 177983 -282015681 - AluSx SINE Alu -13 299 1 265 175 88 0 chr1 185973 186030 -282007634 + MIR SINE MIR 79 140 -122 347 277 0 18 chr1 186589 186701 -282006963 + (CA)n Simple_repeat Simple_repeat 2 111 0 186 236 0 0 chr1 186715 186770 -282006894 + (CA)n Simple_repeat Simple_repeat 1 55 0 461 320 6 6 chr1 186784 187021 -282006643 + (CA)n Simple_repeat Simple_repeat 1 237 0 231 244 90 0 chr1 189284 189362 -282004302 - MER53 DNA DNA -83 106 22 382 153 45 18 chr1 189944 190055 -282003609 + CT-rich Low_complexity Low_complexity 4 117 0 297 289 0 11 chr1 192072 192162 -282001502 + (CGTG)n Simple_repeat Simple_repeat 1 89 0 265 235 12 19 chr1 192176 192338 -282001326 + (TG)n Simple_repeat Simple_repeat 1 161 0 1865 137 0 7 chr1 192605 192890 -282000774 + AluJo SINE Alu 5 287 -25 2129 121 3 6 chr1 193050 193363 -282000301 + AluSx SINE Alu 1 312 0 2133 110 10 0 chr1 193386 193686 -281999978 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr1 194775 194799 -281998865 + GC_rich Low_complexity Low_complexity 1 24 0 1895 113 60 0 chr1 195477 195759 -281997905 - AluSg SINE Alu -4 306 8 213 258 113 80 chr1 195861 196012 -281997652 - L2 LINE L2 -911 2403 2248 2012 93 13 7 chr1 196355 196655 -281997009 - AluSq SINE Alu -11 302 1 1029 178 53 0 chr1 196660 196924 -281996740 + L1M4 LINE L1 4897 5174 -972 2081 141 0 0 chr1 197001 197307 -281996357 + AluSx SINE Alu 1 306 -6 803 123 0 8 chr1 200797 200927 -281992737 - FLAM_C SINE Alu -4 139 11 240 208 104 26 chr1 200960 201030 -281992634 + MIR SINE MIR 73 151 -111 1496 86 62 5 chr1 201030 201239 -281992425 - AluSg/x SINE Alu -10 300 80 2093 114 7 0 chr1 201255 201554 -281992110 - AluSp SINE Alu -12 301 1 259 213 0 0 chr1 201991 202038 -281991626 + MLT1G1 LTR MaLR 4 50 -545 388 229 63 80 chr1 202112 202287 -281991377 + MLT1G1 LTR MaLR 182 353 -242 375 221 88 27 chr1 204048 204209 -281989455 - MLT1H LTR MaLR -294 255 48 304 308 29 0 chr1 206598 206702 -281986962 - L1ME LINE L1 -408 5762 5656 1590 126 11 11 chr1 206958 207221 -281986443 - AluSp SINE Alu -7 306 44 1085 162 10 10 chr1 208075 208317 -281985347 - AluJb SINE Alu 0 312 116 192 125 0 0 chr1 208355 208387 -281985277 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1855 100 15 15 chr1 208388 208659 -281985005 - AluSx SINE Alu -27 285 15 737 175 80 69 chr1 209534 209686 -281983978 - L1M4 LINE L1 -879 5267 5109 1662 214 112 0 chr1 209686 210042 -281983622 - MSTD LTR MaLR 0 396 1 737 175 80 69 chr1 210042 210163 -281983501 - L1M4 LINE L1 -1037 5109 4991 2279 93 0 6 chr1 210163 210475 -281983189 - AluSx SINE Alu -2 310 1 2189 79 7 3 chr1 210476 210768 -281982896 - AluY SINE Alu -18 293 1 275 225 50 88 chr1 211005 211205 -281982459 - L1M4 LINE L1 -3733 2413 2222 2248 99 3 3 chr1 211219 211531 -281982133 - AluSq SINE Alu 0 313 2 1256 143 9 0 chr1 211532 211742 -281981922 - AluJb SINE Alu -9 303 92 295 194 23 63 chr1 212058 212233 -281981431 + (TG)n Simple_repeat Simple_repeat 1 168 0 313 172 23 69 chr1 212343 212517 -281981147 + (TG)n Simple_repeat Simple_repeat 1 166 0 180 0 0 0 chr1 212543 212563 -281981101 + (TG)n Simple_repeat Simple_repeat 1 20 0 276 189 23 69 chr1 212622 212797 -281980867 + (TG)n Simple_repeat Simple_repeat 1 167 0 209 115 35 46 chr1 212826 212913 -281980751 + (TG)n Simple_repeat Simple_repeat 1 86 0 293 207 29 52 chr1 212926 213100 -281980564 + (TG)n Simple_repeat Simple_repeat 1 170 0 2361 47 7 10 chr1 215557 215856 -281977808 - AluY SINE Alu -10 301 4 2095 117 0 13 chr1 215859 216159 -281977505 - AluSg SINE Alu -14 296 1 923 112 15 0 chr1 216159 216293 -281977371 - AluSq/x SINE Alu -176 136 1 1804 119 0 4 chr1 216348 216474 -281977190 - AluSx SINE Alu -53 259 134 1851 122 48 7 chr1 216474 216768 -281976896 - AluSg SINE Alu 0 310 5 1804 119 0 4 chr1 216768 216901 -281976763 - AluSx SINE Alu -178 134 1 353 73 36 0 chr1 216911 216966 -281976698 - Alu SINE Alu -8 294 238 4943 96 38 67 chr1 216969 217890 -281975774 - pTR5 LTR ERV1 0 2438 1545 219 219 0 55 chr1 219124 219197 -281974467 + G-rich Low_complexity Low_complexity 1 69 0 1163 180 8 25 chr1 222036 222281 -281971383 - MSTA LTR MaLR -187 241 1 832 293 77 37 chr1 223150 223227 -281970437 + L1MEc LINE L1 886 958 -5438 402 204 326 0 chr1 223227 223325 -281970339 + FLAM_A SINE Alu 2 131 -2 832 293 77 37 chr1 223325 223552 -281970112 + L1MEc LINE L1 958 1216 -5180 2082 108 3 44 chr1 223552 223891 -281969773 + AluSx SINE Alu 1 312 0 832 293 77 37 chr1 223891 224039 -281969625 + L1MEc LINE L1 1216 1357 -5039 696 230 81 53 chr1 224106 224196 -281969468 + L1MB5 LINE L1 4078 4164 -1982 2117 107 7 10 chr1 224196 224523 -281969141 + AluSp SINE Alu 1 313 0 1698 169 0 48 chr1 224532 224846 -281968818 + AluJb SINE Alu 1 299 -13 696 230 81 53 chr1 224846 225028 -281968636 + L1MB5 LINE L1 4171 4368 -1778 359 190 58 29 chr1 228894 229068 -281964596 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 420 281 117 15 chr1 229603 229799 -281963865 + L1MB5 LINE L1 5451 5666 -512 852 234 35 0 chr1 229906 230137 -281963527 + L1MB5 LINE L1 5928 6166 -8 292 205 12 48 chr1 230827 230910 -281962754 - HERV16 LTR ERVL -4568 428 349 436 200 0 0 chr1 231524 231604 -281962060 + AluJ/FRAM SINE Alu 217 296 -16 2104 132 0 7 chr1 231606 231916 -281961748 + AluSx SINE Alu 1 308 -4 180 260 67 96 chr1 232408 232512 -281961152 + L2 LINE L2 3120 3220 -93 1694 128 10 24 chr1 232963 233253 -281960411 - AluJb SINE Alu 0 312 27 2035 108 10 3 chr1 233259 233547 -281960117 - AluSx SINE Alu -19 293 4 219 57 0 75 chr1 233674 233727 -281959937 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 2345 80 6 10 chr1 233925 234238 -281959426 - AluSx SINE Alu 0 312 1 1109 189 148 33 chr1 234251 234521 -281959143 - AluSq SINE Alu -2 301 1 2950 218 70 36 chr1 234605 235254 -281958410 - L1MB5 LINE L1 0 6174 5475 2126 106 6 16 chr1 235254 235565 -281958099 - AluSx SINE Alu -4 308 1 2950 218 70 36 chr1 235565 235873 -281957791 - L1MB5 LINE L1 -699 5475 5179 1865 139 3 13 chr1 235936 236246 -281957418 + AluJb SINE Alu 3 309 -3 1797 91 0 4 chr1 437967 438209 -281755455 + AluSc SINE Alu 63 303 -6 457 258 24 0 chr1 438300 438424 -281755240 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr1 438569 438626 -281755038 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr1 438627 438806 -281754858 - AluY SINE Alu -132 179 1 442 172 108 0 chr1 438840 438933 -281754731 - MER66A LTR ERV1 0 478 376 760 233 11 23 chr1 438933 439109 -281754555 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr1 439124 439393 -281754271 - AluSx SINE Alu -37 275 1 445 298 45 20 chr1 439420 439618 -281754046 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr1 442118 442395 -281751269 - AluSx SINE Alu -23 289 1 1350 164 98 0 chr1 442416 442529 -281751135 - AluJo SINE Alu -44 268 168 2559 38 0 22 chr1 442529 442847 -281750817 - AluY SINE Alu 0 311 1 1350 164 98 0 chr1 442847 442977 -281750687 - AluJo SINE Alu -144 168 1 312 61 41 0 chr1 442977 443026 -281750638 - AluJo SINE Alu -167 135 85 1599 120 43 0 chr1 443101 443335 -281750329 - AluSx SINE Alu -68 244 1 935 74 0 0 chr1 443852 443973 -281749691 + AluSg/x SINE Alu 184 304 -8 1732 122 26 51 chr1 443974 444286 -281749378 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr1 444513 444682 -281748982 - MER63 DNA MER1_type -45 1017 826 240 265 0 15 chr1 444761 444804 -281748860 - AluJo SINE Alu -123 179 136 1895 128 0 52 chr1 444804 445110 -281748554 - AluSx SINE Alu -22 290 1 240 265 0 15 chr1 445110 445134 -281748530 - AluJo SINE Alu -166 136 113 2263 91 13 0 chr1 446449 446757 -281746907 - AluSx SINE Alu 0 312 1 2090 117 0 0 chr1 449452 449743 -281743921 - AluSx SINE Alu -21 291 1 414 142 142 19 chr1 450722 450828 -281742836 + MER20 DNA MER1_type 53 171 -48 2164 111 3 0 chr1 451886 452183 -281741481 - AluSg SINE Alu -12 298 1 309 243 70 119 chr1 452335 452361 -281741303 - HAL1 LINE L1 -2 2505 2479 2352 61 3 0 chr1 452361 452654 -281741010 + AluY SINE Alu 1 294 -17 309 243 70 119 chr1 452654 452699 -281740965 - HAL1 LINE L1 -28 2479 2433 1620 169 35 0 chr1 452699 452983 -281740681 + AluJo SINE Alu 4 297 -15 309 243 70 119 chr1 452983 453003 -281740661 - HAL1 LINE L1 -74 2433 2414 2162 88 10 7 chr1 453003 453298 -281740366 + AluY SINE Alu 1 296 -15 309 243 70 119 chr1 453298 453389 -281740275 - HAL1 LINE L1 -93 2414 2330 2239 97 3 0 chr1 453405 453703 -281739961 - AluSx SINE Alu -13 299 1 1628 149 57 7 chr1 453710 453992 -281739672 - AluJo SINE Alu -16 296 1 1018 157 17 0 chr1 454228 454406 -281739258 + AluJb SINE Alu 120 300 -12 2274 90 0 0 chr1 454406 454707 -281738957 + AluY SINE Alu 1 301 -10 255 261 85 24 chr1 454798 454963 -281738701 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 379 243 47 24 chr1 454984 455233 -281738431 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 255 318 6 11 chr1 455263 455439 -281738225 + (CA)n Simple_repeat Simple_repeat 1 175 0 * 378 268 36 40 chr1 455341 455684 -281737980 + (CTCA)n Simple_repeat Simple_repeat 1 341 0 437 256 64 21 chr1 455761 456102 -281737562 + (CTCA)n Simple_repeat Simple_repeat 1 355 0 332 339 0 0 chr1 456039 456207 -281737457 + (CA)n Simple_repeat Simple_repeat 1 168 0 * 431 266 40 29 chr1 456149 456322 -281737342 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 285 204 57 45 chr1 456504 456580 -281737084 - AluJb SINE Alu -89 213 139 1621 155 13 44 chr1 456580 456761 -281736903 - AluJo SINE Alu -6 306 121 2158 113 7 0 chr1 456761 457071 -281736593 - AluSp SINE Alu -1 312 1 2145 105 16 3 chr1 457071 457376 -281736288 - AluSp SINE Alu -4 309 1 1988 128 0 3 chr1 457376 457657 -281736007 - AluSx SINE Alu -18 294 14 1621 155 13 44 chr1 457657 457789 -281735875 - AluJo SINE Alu -188 124 1 285 204 57 45 chr1 457789 457800 -281735864 - AluJb SINE Alu -163 139 125 1937 116 10 20 chr1 458095 458226 -281735438 + AluSq SINE Alu 4 135 -178 2360 88 0 0 chr1 458226 458522 -281735142 + AluSg SINE Alu 2 297 -13 2324 76 0 10 chr1 458522 458822 -281734842 + AluY SINE Alu 1 298 -13 1937 116 10 20 chr1 458822 458992 -281734672 + AluSq SINE Alu 133 303 -10 650 159 68 38 chr1 458993 459125 -281734539 + FRAM SINE Alu 9 144 -32 1393 128 0 0 chr1 459126 459322 -281734342 - AluSg/x SINE Alu -15 295 100 2258 94 0 3 chr1 459325 459622 -281734042 - AluSc SINE Alu -13 296 1 2300 96 0 3 chr1 459623 459926 -281733738 - AluSx SINE Alu -10 302 1 243 304 78 10 chr1 461032 461134 -281732530 + L2 LINE L2 3158 3266 -6 184 264 6 6 chr1 461193 461352 -281732312 + (TG)n Simple_repeat Simple_repeat 2 160 0 288 273 0 0 chr1 461397 461573 -281732091 + (TG)n Simple_repeat Simple_repeat 1 176 0 1029 211 127 24 chr1 464533 464607 -281729057 + MER54A LTR ERVL 489 554 -347 1857 128 10 14 chr1 464607 464897 -281728767 - AluSq SINE Alu -22 291 3 1029 211 127 24 chr1 464897 465191 -281728473 + MER54A LTR ERVL 554 895 -6 189 0 0 0 chr1 465779 465800 -281727864 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 190 324 14 0 chr1 466846 466920 -281726744 + MIR SINE MIR 56 130 -132 180 111 0 0 chr1 471419 471446 -281722218 + (TG)n Simple_repeat Simple_repeat 1 27 0 394 333 11 11 chr1 471519 471696 -281721968 + (TG)n Simple_repeat Simple_repeat 1 177 0 296 286 4 18 chr1 471753 472031 -281721633 + (TG)n Simple_repeat Simple_repeat 1 273 0 255 258 0 38 chr1 472036 472222 -281721442 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 201 188 0 80 chr1 475042 475154 -281718510 + (CCGCT)n Simple_repeat Simple_repeat 3 105 0 202 260 0 52 chr1 479172 479268 -281714396 + (CAGGG)n Simple_repeat Simple_repeat 5 95 0 1300 96 15 20 chr1 481358 481555 -281712109 + AluSg/x SINE Alu 108 303 -7 562 189 78 20 chr1 481589 481742 -281711922 - L1MC4a LINE L1 -1260 6548 6387 25 31 0 0 chr1 481998 482030 -281711634 + GC_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr1 482160 482209 -281711455 + GC_rich Low_complexity Low_complexity 1 49 0 245 146 31 73 chr1 482362 482458 -281711206 + C-rich Low_complexity Low_complexity 5 96 0 359 306 41 0 chr1 486143 486313 -281707351 + C-rich Low_complexity Low_complexity 3 179 0 300 247 45 45 chr1 486305 486483 -281707181 + (CCCCG)n Simple_repeat Simple_repeat 2 179 0 * 383 293 43 0 chr1 486389 486553 -281707111 + C-rich Low_complexity Low_complexity 3 173 0 349 301 43 0 chr1 486589 486752 -281706912 + C-rich Low_complexity Low_complexity 4 173 0 350 308 41 0 chr1 486783 486952 -281706712 + C-rich Low_complexity Low_complexity 4 179 0 291 222 11 83 chr1 487001 487181 -281706483 + CT-rich Low_complexity Low_complexity 1 167 0 * 343 317 37 0 chr1 487178 487342 -281706322 + C-rich Low_complexity Low_complexity 3 172 0 205 284 40 47 chr1 489248 489396 -281704268 + (CACG)n Simple_repeat Simple_repeat 4 150 0 234 261 6 68 chr1 489644 489820 -281703844 + (CA)n Simple_repeat Simple_repeat 1 165 0 209 60 40 40 chr1 494649 494699 -281698965 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 305 106 211 7 chr1 495274 495416 -281698248 + (CAGCC)n Simple_repeat Simple_repeat 4 174 0 249 143 175 13 chr1 495436 495590 -281698074 + (CAGCC)n Simple_repeat Simple_repeat 1 179 0 1774 147 7 20 chr1 495746 496038 -281697626 + AluJo SINE Alu 3 290 -22 316 349 0 0 chr1 496694 496843 -281696821 + C-rich Low_complexity Low_complexity 1 149 0 229 113 0 38 chr1 496988 497041 -281696623 + (TCCCC)n Simple_repeat Simple_repeat 5 55 0 214 236 64 27 chr1 497450 497560 -281696104 - L2 LINE L2 -26 3246 3133 300 331 120 38 chr1 499703 499969 -281693695 + L2 LINE L2 3006 3293 -20 575 315 89 78 chr1 500748 500914 -281692750 - L1MEc LINE L1 -3603 2612 2449 1445 150 66 31 chr1 500914 501200 -281692464 - AluJb SINE Alu -15 297 2 575 315 89 78 chr1 501200 501407 -281692257 - L1MEc LINE L1 -3766 2449 2246 2247 39 3 43 chr1 501407 501712 -281691952 + AluY SINE Alu 1 293 -18 575 315 89 78 chr1 501712 501988 -281691676 - L1MEc LINE L1 -3969 2246 1390 2189 86 6 22 chr1 502155 502468 -281691196 - AluSq SINE Alu -5 308 1 737 104 104 49 chr1 502482 502626 -281691038 + FRAM SINE Alu 1 146 -30 2334 83 3 0 chr1 502630 502932 -281690732 - AluSx SINE Alu -8 304 2 1979 121 24 17 chr1 502971 503269 -281690395 - AluSq SINE Alu -13 300 1 1678 145 0 0 chr1 503274 503522 -281690142 - AluSx SINE Alu -10 302 55 187 176 0 54 chr1 503890 503964 -281689700 + C-rich Low_complexity Low_complexity 2 71 0 25 0 0 0 chr1 507441 507466 -281686198 + GC_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr1 511097 511130 -281682534 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 511446 511487 -281682177 + GC_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr1 511601 511625 -281682039 + GC_rich Low_complexity Low_complexity 1 24 0 245 222 28 19 chr1 511705 511813 -281681851 + (CGCGG)n Simple_repeat Simple_repeat 4 112 0 23 0 0 0 chr1 512018 512041 -281681623 + GC_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 512100 512127 -281681537 + GC_rich Low_complexity Low_complexity 1 27 0 212 329 12 0 chr1 513031 513116 -281680548 + (TG)n Simple_repeat Simple_repeat 1 86 0 189 238 48 60 chr1 518005 518089 -281675575 - L2 LINE L2 -1002 2312 2230 1652 148 36 26 chr1 518224 518527 -281675137 + AluJo SINE Alu 1 306 -6 976 161 0 40 chr1 518540 518714 -281674950 + AluJb SINE Alu 128 294 -18 2133 103 17 0 chr1 518717 519019 -281674645 + AluSp SINE Alu 1 307 -6 264 325 26 13 chr1 522880 523031 -281670633 + (CGTG)n Simple_repeat Simple_repeat 4 156 0 211 235 12 37 chr1 525698 525779 -281667885 + (CCCCG)n Simple_repeat Simple_repeat 1 79 0 213 65 0 0 chr1 525791 525822 -281667842 + (CCCCG)n Simple_repeat Simple_repeat 4 34 0 202 183 0 84 chr1 525991 526062 -281667602 + G-rich Low_complexity Low_complexity 4 68 0 276 325 0 38 chr1 529516 529673 -281663991 + G-rich Low_complexity Low_complexity 5 155 0 279 116 52 64 chr1 529673 529845 -281663819 + (CAGAGA)n Simple_repeat Simple_repeat 1 170 0 280 125 56 56 chr1 529902 530227 -281663437 + (CAGAGA)n Simple_repeat Simple_repeat 1 325 0 207 122 58 70 chr1 530275 530447 -281663217 + (CAGAGA)n Simple_repeat Simple_repeat 1 170 0 180 77 0 0 chr1 532671 532697 -281660967 + (TGG)n Simple_repeat Simple_repeat 2 27 0 2157 119 3 0 chr1 534665 534968 -281658696 - AluSp SINE Alu -9 304 1 2448 57 0 0 chr1 535335 535632 -281658032 + AluY SINE Alu 3 299 -12 298 257 86 9 chr1 536127 536232 -281657432 + MIR SINE MIR 33 145 -117 1517 163 62 0 chr1 537596 537902 -281655762 + MER4B LTR ERV1 3 327 -283 2427 57 7 0 chr1 537902 538202 -281655462 - AluY SINE Alu -9 302 1 1010 80 0 29 chr1 538202 538340 -281655324 - AluSc SINE Alu -175 134 1 2551 152 14 42 chr1 538392 538684 -281654980 + MER4B-int LTR ERV1 238 512 -6246 2515 50 0 0 chr1 538684 538984 -281654680 + AluY SINE Alu 2 301 -10 2551 152 14 42 chr1 538984 539191 -281654473 + MER4B-int LTR ERV1 512 723 -6035 2504 163 60 88 chr1 539294 539592 -281654072 + MER4B-int LTR ERV1 698 1003 -5755 2204 112 0 0 chr1 539592 539896 -281653768 + AluSq SINE Alu 1 304 -9 2504 163 60 88 chr1 539896 539963 -281653701 + MER4B-int LTR ERV1 1003 1070 -5688 2021 139 0 0 chr1 539963 540258 -281653406 - AluSx SINE Alu -17 295 1 2504 163 60 88 chr1 540258 540541 -281653123 + MER4B-int LTR ERV1 1070 1359 -5399 2361 58 0 3 chr1 540541 540836 -281652828 - AluY SINE Alu -17 294 1 2504 163 60 88 chr1 540836 540963 -281652701 + MER4B-int LTR ERV1 1359 1488 -5270 2108 119 0 3 chr1 540963 541258 -281652406 + AluSx SINE Alu 1 294 -18 2504 163 60 88 chr1 541258 541606 -281652058 + MER4B-int LTR ERV1 1488 2256 -4502 2097 117 3 0 chr1 541610 541900 -281651764 + AluSx SINE Alu 4 294 -18 1263 164 9 0 chr1 541903 542129 -281651535 + MER4B-int LTR ERV1 6531 6758 0 2513 162 109 17 chr1 542129 542672 -281650992 + MER4B LTR ERV1 1 593 -17 22 0 0 0 chr1 544381 544403 -281649261 + GC_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr1 544833 544863 -281648801 + GC_rich Low_complexity Low_complexity 1 30 0 983 162 29 17 chr1 546223 546380 -281647284 - AluSq SINE Alu -18 295 134 2341 99 3 0 chr1 546380 546692 -281646972 - AluSp SINE Alu 0 313 1 983 162 29 17 chr1 546692 546707 -281646957 - AluSq SINE Alu -179 134 121 2045 155 50 11 chr1 548134 548495 -281645169 - THE1C LTR MaLR 0 375 1 2212 98 0 13 chr1 548621 548927 -281644737 + AluSq SINE Alu 1 302 -11 1531 163 78 0 chr1 549419 549689 -281643975 + AluJb SINE Alu 12 302 -10 2256 81 0 0 chr1 551196 551504 -281642160 + AluSq SINE Alu 1 308 0 2214 80 7 20 chr1 551545 551845 -281641819 - AluY SINE Alu -15 296 1 856 89 0 0 chr1 551845 551957 -281641707 - AluSx SINE Alu -16 294 183 904 102 0 0 chr1 551957 552075 -281641589 - AluSx SINE Alu -195 118 1 2027 97 0 25 chr1 552454 552733 -281640931 + AluSc SINE Alu 3 274 -35 547 67 22 0 chr1 552735 552824 -281640840 + (CA)n Simple_repeat Simple_repeat 1 91 0 590 184 34 101 chr1 552875 553082 -281640582 - MER68 LTR ERV1 -211 351 159 1983 116 0 0 chr1 553496 553763 -281639901 - AluSx SINE Alu -45 267 1 1037 110 0 0 chr1 553763 553899 -281639765 - AluSq/x SINE Alu -177 136 1 1624 168 11 0 chr1 554387 554655 -281639009 - AluJo SINE Alu -19 293 23 2190 83 4 0 chr1 556232 556508 -281637156 + AluSp SINE Alu 1 277 -36 1464 90 24 14 chr1 556508 556720 -281636944 + AluY SINE Alu 68 281 -30 256 289 41 41 chr1 557207 557328 -281636336 + L2 LINE L2 1879 1999 -1315 794 218 45 1 chr1 558480 558842 -281634822 + MER54A LTR ERVL 489 895 -6 291 313 0 87 chr1 559002 559197 -281634467 + (CACG)n Simple_repeat Simple_repeat 1 178 0 376 289 12 36 chr1 559211 559377 -281634287 + (CACG)n Simple_repeat Simple_repeat 4 165 0 270 284 60 17 chr1 559546 559662 -281634002 - L2 LINE L2 -704 2610 2490 2455 35 6 19 chr1 560669 560980 -281632684 - AluY SINE Alu -4 307 1 768 287 0 0 chr1 563681 563817 -281629847 + C-rich Low_complexity Low_complexity 1 136 0 402 381 94 18 chr1 563820 564106 -281629558 - HAL1 LINE L1 -1306 1201 894 307 163 9 9 chr1 564699 564781 -281628883 - FLAM SINE Alu 0 133 58 2051 115 10 0 chr1 565018 565313 -281628351 + AluSx SINE Alu 1 298 -14 268 234 52 39 chr1 565481 565558 -281628106 - L2 LINE L2 -16 3256 3179 217 306 12 35 chr1 565650 565735 -281627929 - L2 LINE L2 -912 2402 2320 248 243 14 14 chr1 565834 565908 -281627756 + (TG)n Simple_repeat Simple_repeat 1 74 0 202 382 34 0 chr1 565991 566080 -281627584 - MIR SINE MIR -118 144 53 1604 134 12 78 chr1 566264 566585 -281627079 + AluJo SINE Alu 1 300 -12 217 320 0 29 chr1 568317 568489 -281625175 + (CCCG)n Simple_repeat Simple_repeat 3 169 0 629 257 27 9 chr1 569203 569425 -281624239 - L1MC3 LINE L1 -240 7545 7320 267 309 65 22 chr1 569551 569690 -281623974 - L1MC3 LINE L1 -936 6849 6705 225 198 79 8 chr1 569971 570097 -281623567 + (TG)n Simple_repeat Simple_repeat 1 135 0 301 226 71 0 chr1 570518 570602 -281623062 - MSTD LTR MaLR -291 105 16 1568 193 10 10 chr1 570850 571151 -281622513 - AluJb SINE Alu -11 301 1 2141 114 3 0 chr1 571202 571499 -281622165 + AluSx SINE Alu 1 298 -14 366 266 93 103 chr1 575164 575476 -281618188 + HAL1 LINE L1 985 1293 -1214 460 237 171 13 chr1 580253 580481 -281613183 - MLT1C LTR MaLR -203 264 1 221 292 62 31 chr1 581460 581556 -281612108 + MIR SINE MIR 34 132 -76 1473 154 67 4 chr1 584436 584703 -281608961 + AluJb SINE Alu 2 285 -27 1752 161 0 32 chr1 584728 584814 -281608850 - AluJb SINE Alu -11 301 214 6627 102 25 13 chr1 584814 585756 -281607908 - LTR13 LTR ERVK 0 954 1 1752 161 0 32 chr1 585756 585980 -281607684 - AluJb SINE Alu -98 214 1 638 89 0 30 chr1 585991 586092 -281607572 - AluSg/x SINE Alu -14 298 201 337 222 7 37 chr1 586369 586646 -281607018 + (TG)n Simple_repeat Simple_repeat 1 268 0 1398 213 45 0 chr1 587606 587893 -281605771 - AluJb SINE Alu -12 300 1 572 141 16 55 chr1 587901 588029 -281605635 - AluJb SINE Alu -1 311 189 730 206 32 74 chr1 588107 588296 -281605368 - AluJb SINE Alu -128 184 4 597 200 0 0 chr1 588489 588599 -281605065 - FLAM_C SINE Alu -33 110 1 29 0 0 0 chr1 592060 592089 -281601575 + GC_rich Low_complexity Low_complexity 1 29 0 293 204 157 0 chr1 594566 594661 -281599003 - MLT1B LTR MaLR -270 104 3 2086 108 10 0 chr1 594709 595005 -281598659 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 597772 597803 -281595861 + GC_rich Low_complexity Low_complexity 1 31 0 208 232 0 71 chr1 598229 598341 -281595323 + G-rich Low_complexity Low_complexity 1 104 0 243 261 159 23 chr1 599199 599287 -281594377 - L2 LINE L2 -4 3309 3210 404 292 134 38 chr1 599329 599538 -281594126 + L1M4 LINE L1 166 394 -6148 1249 173 4 27 chr1 599553 599687 -281593977 + AluJo SINE Alu 1 130 -182 1775 158 10 7 chr1 599687 599978 -281593686 + AluJo SINE Alu 1 292 -20 1249 173 4 27 chr1 599978 600068 -281593596 + AluJo SINE Alu 130 220 -92 278 106 0 0 chr1 600069 600116 -281593548 + AluSg/x SINE Alu 85 131 -169 1967 266 94 79 chr1 600122 600336 -281593328 + L1M4 LINE L1 1231 1440 -5204 1654 164 30 10 chr1 600336 600640 -281593024 + AluSx SINE Alu 1 310 -2 1967 266 94 79 chr1 600640 601455 -281592209 + L1M4 LINE L1 1440 2241 -4403 1506 208 17 10 chr1 601455 601743 -281591921 - AluJb SINE Alu -18 294 5 1967 266 94 79 chr1 601743 602095 -281591569 + L1M4 LINE L1 2241 2646 -3998 2297 83 3 0 chr1 602095 602396 -281591268 - AluY SINE Alu -9 302 1 1967 266 94 79 chr1 602396 602599 -281591065 + L1M4 LINE L1 2646 2844 -3800 2427 197 92 87 chr1 603057 603332 -281590332 + L1M4 LINE L1 2820 3092 -3552 3765 103 4 10 chr1 603332 603846 -281589818 + MER9 LTR ERVK 1 511 0 2427 197 92 87 chr1 603846 604000 -281589664 + L1M4 LINE L1 3092 3244 -3400 764 206 0 0 chr1 604000 604126 -281589538 - FLAM_A SINE Alu -3 130 5 2427 197 92 87 chr1 604126 604321 -281589343 + L1M4 LINE L1 3244 3436 -3208 2137 92 33 13 chr1 604321 604625 -281589039 + AluSq SINE Alu 1 310 -3 2427 197 92 87 chr1 604625 604785 -281588879 + L1M4 LINE L1 3436 3594 -3050 1621 126 0 8 chr1 604785 605023 -281588641 + AluSg/x SINE Alu 73 308 -2 2427 197 92 87 chr1 605023 605310 -281588354 + L1M4 LINE L1 3594 3900 -2744 2001 42 0 0 chr1 605310 605549 -281588115 - AluY SINE Alu -11 300 62 183 351 18 0 chr1 605974 606031 -281587633 - L2 LINE L2 -6 3307 3250 2099 89 0 20 chr1 610302 610594 -281583070 + AluSx SINE Alu 10 295 -17 1392 162 4 4 chr1 612027 612256 -281581408 - AluJo SINE Alu -83 229 1 1999 125 16 0 chr1 612291 612595 -281581069 + AluSx SINE Alu 1 309 -3 1182 114 17 0 chr1 621516 621692 -281571972 + AluJb SINE Alu 3 181 -131 2352 97 3 0 chr1 622920 623230 -281570434 + AluSq SINE Alu 2 312 -1 2236 68 4 0 chr1 623381 623660 -281570004 - AluY SINE Alu -31 280 1 606 258 76 28 chr1 624577 624931 -281568733 - MLT1B LTR MaLR 0 374 18 183 213 197 8 chr1 628698 628820 -281564844 + L2 LINE L2 2002 2146 -1168 238 203 7 115 chr1 630317 630465 -281563199 + (CAGGT)n Simple_repeat Simple_repeat 2 133 0 2276 96 0 0 chr1 636447 636748 -281556916 - AluSx SINE Alu -9 303 3 1865 137 0 7 chr1 636907 637192 -281556472 - AluJo SINE Alu -25 287 5 309 221 11 33 chr1 637459 637640 -281556024 + (CA)n Simple_repeat Simple_repeat 1 177 0 298 290 21 0 chr1 637653 637746 -281555918 + (CACG)n Simple_repeat Simple_repeat 3 97 0 280 245 7 7 chr1 637757 637896 -281555768 + (CA)n Simple_repeat Simple_repeat 1 139 0 185 108 27 0 chr1 638230 638267 -281555397 + G-rich Low_complexity Low_complexity 3 40 0 921 103 7 13 chr1 639000 639155 -281554509 + pTR5 LTR ERV1 239 392 -2046 403 71 36 0 chr1 639155 639211 -281554453 + Alu SINE Alu 235 292 -17 1763 127 0 4 chr1 639221 639354 -281554310 + AluSx SINE Alu 1 134 -178 1851 122 48 7 chr1 639354 639648 -281554016 + AluSg SINE Alu 5 310 0 929 150 19 12 chr1 639631 639791 -281553873 + AluJb SINE Alu 118 278 -34 1763 127 0 4 chr1 639648 639774 -281553890 + AluSx SINE Alu 134 259 -53 1012 110 0 0 chr1 639829 639965 -281553699 + AluSq/x SINE Alu 1 136 -176 2100 114 0 13 chr1 639965 640264 -281553400 + AluSg SINE Alu 1 295 -15 2493 33 0 16 chr1 640267 640570 -281553094 + AluY SINE Alu 4 301 -10 1688 149 23 13 chr1 642267 642568 -281551096 - AluJo SINE Alu -7 305 2 855 176 7 7 chr1 643511 643664 -281550000 - FRAM SINE Alu -13 153 1 539 241 134 19 chr1 643993 644209 -281549455 + L1MC/D LINE L1 5500 5740 -502 1948 101 39 26 chr1 644286 644594 -281549070 + AluSx SINE Alu 1 312 0 186 232 130 29 chr1 646610 646679 -281546985 - MIR SINE MIR -80 182 107 208 264 9 36 chr1 647477 647587 -281546077 + (CCCG)n Simple_repeat Simple_repeat 2 108 0 23 78 0 0 chr1 647904 647955 -281545709 + GC_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 648020 648045 -281545619 + GC_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr1 649181 649227 -281544437 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 649478 649499 -281544165 + GC_rich Low_complexity Low_complexity 1 21 0 2468 87 0 0 chr1 652071 652382 -281541282 - AluSx SINE Alu -1 311 1 293 67 0 0 chr1 652427 652472 -281541192 + AluSp/q SINE Alu 198 242 -61 200 161 0 0 chr1 652865 652896 -281540768 + G-rich Low_complexity Low_complexity 4 34 0 895 76 111 47 chr1 652951 653123 -281540541 - MER30 DNA MER1_type -47 183 1 21 36 0 0 chr1 653385 653413 -281540251 + GC_rich Low_complexity Low_complexity 1 28 0 228 279 0 0 chr1 666174 666235 -281527429 + G-rich Low_complexity Low_complexity 5 65 0 2108 96 4 0 chr1 666547 666868 -281526796 + AluSq SINE Alu 1 322 0 267 225 50 88 chr1 666873 667073 -281526591 + L1M4 LINE L1 2222 2413 -3733 1251 106 28 0 chr1 667299 667479 -281526185 + AluSg/x SINE Alu 115 299 -13 544 181 0 53 chr1 667495 667628 -281526036 + L1M4 LINE L1 4735 4860 -1286 2275 84 3 0 chr1 670265 670561 -281523103 + AluSg SINE Alu 3 299 -11 209 329 85 0 chr1 671072 671154 -281522510 - MIR SINE MIR -20 242 154 611 204 0 0 chr1 672423 672599 -281521065 + (TG)n Simple_repeat Simple_repeat 1 176 0 273 254 0 0 chr1 672610 672740 -281520924 + (TG)n Simple_repeat Simple_repeat 2 131 0 2154 100 0 0 chr1 672742 673023 -281520641 - AluY SINE Alu -16 295 15 231 148 19 0 chr1 673290 673344 -281520320 + L1MD3 LINE L1 7939 7993 -2 270 315 0 18 chr1 675585 675696 -281517968 + (CCCCG)n Simple_repeat Simple_repeat 2 110 0 236 152 22 0 chr1 677154 677200 -281516464 - MLT1C LTR MaLR -368 99 53 282 270 0 0 chr1 679521 679699 -281513965 + GA-rich Low_complexity Low_complexity 3 180 0 180 281 0 0 chr1 679712 679851 -281513813 + GA-rich Low_complexity Low_complexity 2 140 0 195 100 0 0 chr1 680440 680470 -281513194 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 2205 97 3 3 chr1 684731 685039 -281508625 - AluSg SINE Alu -2 308 1 488 206 6 24 chr1 688216 688386 -281505278 + G-rich Low_complexity Low_complexity 3 169 0 930 92 7 7 chr1 890028 890170 -281303494 + AluSp/q SINE Alu 169 310 -3 1703 108 13 0 chr1 890223 890455 -281303209 + AluSg SINE Alu 1 235 -75 180 0 0 0 chr1 890455 890475 -281303189 + (A)n Simple_repeat Simple_repeat 1 20 0 2536 62 0 0 chr1 890484 890792 -281302872 + AluY SINE Alu 1 308 -3 968 118 51 0 chr1 890794 890971 -281302693 + LTR10A LTR ERV1 376 609 0 506 81 0 40 chr1 890971 891045 -281302619 + Alu SINE Alu 221 291 -19 905 78 0 8 chr1 891047 891175 -281302489 + FLAM_C SINE Alu 1 127 -16 1525 179 26 23 chr1 891267 891435 -281302229 - AluSx SINE Alu -3 309 138 2099 111 3 3 chr1 891435 891732 -281301932 - AluSq SINE Alu -14 299 3 1525 179 26 23 chr1 891732 891871 -281301793 - AluSx SINE Alu -174 138 1 1963 111 28 7 chr1 891881 892170 -281301494 - AluSg SINE Alu -15 295 1 1206 163 80 73 chr1 892246 892546 -281301118 + AluJo SINE Alu 1 302 -10 250 203 47 31 chr1 895515 895579 -281298085 + L1MC3 LINE L1 7496 7560 -225 252 219 16 16 chr1 895642 895706 -281297958 + L1MC3 LINE L1 7709 7772 -13 * 1498 230 72 0 chr1 895705 896123 -281297541 + L1 LINE L1 3508 3955 -2191 934 92 0 0 chr1 896138 896258 -281297406 + AluSq/x SINE Alu 1 120 -192 849 226 76 4 chr1 896318 896593 -281297071 + L1 LINE L1 3949 4243 -1903 1811 133 10 43 chr1 896636 896793 -281296871 - AluSx SINE Alu -20 292 148 2200 102 0 3 chr1 896793 897097 -281296567 - AluSg SINE Alu -7 303 1 1811 133 10 43 chr1 897097 897241 -281296423 - AluSx SINE Alu -164 148 1 1856 147 10 0 chr1 897245 897544 -281296120 - AluSx SINE Alu -4 308 7 1647 190 0 0 chr1 897564 897843 -281295821 - AluJb SINE Alu -25 287 9 269 196 18 0 chr1 897941 897997 -281295667 + MLT1I LTR MaLR 353 409 0 1952 132 10 0 chr1 898212 898501 -281295163 - AluSc SINE Alu -17 292 1 1286 121 15 5 chr1 900693 900891 -281292773 + AluSq SINE Alu 1 200 -113 22 35 0 0 chr1 900891 900920 -281292744 + AT_rich Low_complexity Low_complexity 1 29 0 965 183 106 84 chr1 900931 900986 -281292678 + AluJb SINE Alu 14 66 -246 2076 114 0 0 chr1 900986 901276 -281292388 - AluSg SINE Alu -20 290 1 965 183 106 84 chr1 901276 901493 -281292171 + AluJb SINE Alu 66 292 -20 1687 143 4 8 chr1 901499 901757 -281291907 + AluSq SINE Alu 1 257 -56 2269 75 7 0 chr1 902250 902545 -281291119 - AluY SINE Alu -13 298 2 835 116 16 16 chr1 905141 905270 -281288394 + AluSp SINE Alu 13 141 -172 1961 112 10 17 chr1 905274 905570 -281288094 + AluY SINE Alu 1 294 -17 1747 122 3 91 chr1 905945 906265 -281287399 - AluSx SINE Alu -20 292 1 1417 152 24 110 chr1 906265 906599 -281287065 - AluSp SINE Alu -7 306 1 819 115 23 8 chr1 906613 906743 -281286921 - AluY SINE Alu -179 132 1 1201 171 15 0 chr1 906744 906949 -281286715 - AluJb SINE Alu -20 292 85 2057 114 0 10 chr1 908281 908578 -281285086 + AluSg SINE Alu 1 294 -16 216 0 0 0 chr1 909118 909142 -281284522 + (TG)n Simple_repeat Simple_repeat 2 25 0 383 279 0 53 chr1 909199 909389 -281284275 + (TG)n Simple_repeat Simple_repeat 1 180 0 315 238 17 0 chr1 909413 909585 -281284079 + (TG)n Simple_repeat Simple_repeat 2 176 0 494 279 6 6 chr1 909613 909792 -281283872 + (TG)n Simple_repeat Simple_repeat 1 179 0 318 339 6 27 chr1 909704 909887 -281283777 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 * 1834 144 17 0 chr1 910845 911136 -281282528 + AluSx SINE Alu 1 296 -16 2076 79 18 0 chr1 911138 911464 -281282200 + AluSp SINE Alu 1 331 0 935 167 61 5 chr1 911918 912116 -281281548 + AluSg/x SINE Alu 85 293 -17 1346 149 0 0 chr1 912119 912327 -281281337 + AluSg/x SINE Alu 83 290 -20 2173 86 7 0 chr1 912334 912626 -281281038 + AluY SINE Alu 1 294 -17 1925 130 3 7 chr1 914341 914641 -281279023 + AluSx SINE Alu 1 299 -13 2347 65 13 0 chr1 914652 914959 -281278705 + AluY SINE Alu 1 311 0 516 231 0 0 chr1 914977 915085 -281278579 + FLAM_A SINE Alu 20 127 -15 1844 148 0 0 chr1 915348 915638 -281278026 + AluSc SINE Alu 1 290 -19 1108 39 0 0 chr1 915646 915773 -281277891 + AluY SINE Alu 9 135 -176 1850 50 50 0 chr1 915773 916011 -281277653 + AluY SINE Alu 60 309 -2 1831 110 41 10 chr1 916021 916313 -281277351 + AluSg SINE Alu 3 303 -7 189 0 0 0 chr1 917023 917044 -281276620 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 25 35 0 52 chr1 917157 917215 -281276449 + GC_rich Low_complexity Low_complexity 1 55 0 2137 158 140 0 chr1 917766 917905 -281275759 + LTR10A LTR ERV1 1 119 -490 1829 135 204 13 chr1 917905 918283 -281275381 - LTR7 LTR ERV1 0 450 1 2137 158 140 0 chr1 918283 918623 -281275041 + LTR10A LTR ERV1 119 547 -62 489 134 24 0 chr1 918642 918724 -281274940 + Alu SINE Alu 228 311 0 1863 129 13 26 chr1 918729 918940 -281274724 + AluSx SINE Alu 1 208 -104 1495 182 102 62 chr1 918940 919373 -281274291 - LTR7 LTR ERV1 0 450 1 1863 129 13 26 chr1 919373 919464 -281274200 + AluSx SINE Alu 208 299 -13 842 102 16 23 chr1 919466 919594 -281274070 + FLAM_C SINE Alu 1 127 -16 854 200 0 25 chr1 919677 919837 -281273827 - AluSg/x SINE Alu -17 293 138 1700 123 22 75 chr1 919837 920155 -281273509 - AluSq SINE Alu -12 301 1 250 203 47 31 chr1 921958 922022 -281271642 + L1MC3 LINE L1 7496 7560 -225 292 169 31 15 chr1 922084 922149 -281271515 + L1MD3 LINE L1 7920 7985 -10 2856 218 55 52 chr1 922150 922584 -281271080 + L1 LINE L1 3510 3941 -2205 1968 92 58 20 chr1 922584 922876 -281270788 - AluY SINE Alu -8 303 1 1805 113 4 0 chr1 922877 923133 -281270531 - AluSp SINE Alu -8 305 49 2856 218 55 52 chr1 923133 923525 -281270139 + L1 LINE L1 3941 4330 -1816 2431 72 7 0 chr1 923525 923832 -281269832 - AluY SINE Alu -2 309 1 2856 218 55 52 chr1 923832 923953 -281269711 + L1 LINE L1 4330 4449 -1697 2182 95 0 10 chr1 923953 924258 -281269406 + AluSx SINE Alu 1 302 -10 2856 218 55 52 chr1 924258 924392 -281269272 + L1 LINE L1 4449 4679 -1467 1964 100 0 0 chr1 924392 924652 -281269012 - AluSx SINE Alu -51 261 2 2856 218 55 52 chr1 924652 924687 -281268977 + L1 LINE L1 4679 4712 -1434 281 261 203 7 chr1 924729 924867 -281268797 + MLT1A1 LTR MaLR 128 292 -73 1971 121 10 10 chr1 924917 925207 -281268457 - AluSx SINE Alu -10 302 13 1554 206 0 13 chr1 925215 925516 -281268148 - AluJb SINE Alu -15 297 1 296 161 18 0 chr1 925603 925659 -281268005 + MLT1I LTR MaLR 353 409 0 2054 126 0 0 chr1 927654 927948 -281265716 + AluSq SINE Alu 1 294 -19 2087 100 3 32 chr1 928761 929072 -281264592 + AluSp SINE Alu 1 302 -11 1860 134 20 0 chr1 930123 930415 -281263249 + AluSx SINE Alu 1 298 -14 780 191 0 14 chr1 930421 930562 -281263102 + AluJb SINE Alu 3 141 -171 1904 123 17 17 chr1 930562 930855 -281262809 + AluSp SINE Alu 1 293 -20 1892 155 0 7 chr1 930861 931164 -281262500 + AluSx SINE Alu 1 301 -11 1885 136 4 0 chr1 931166 931469 -281262195 + AluSc SINE Alu 1 304 0 2455 64 0 6 chr1 931518 931829 -281261835 - AluY SINE Alu -2 309 1 2475 65 0 7 chr1 933898 934208 -281259456 - AluY SINE Alu -3 308 1 2059 125 0 3 chr1 935201 935498 -281258166 + AluSp SINE Alu 1 296 -17 940 134 0 0 chr1 935506 935640 -281258024 + AluSq/x SINE Alu 2 135 -178 1796 159 3 0 chr1 935640 935936 -281257728 + AluSx SINE Alu 1 297 -15 302 271 68 0 chr1 936196 936314 -281257350 - HUERS-P1 LTR ERV1 -3861 2402 2277 1078 129 6 0 chr1 936314 936477 -281257187 - AluSc SINE Alu 0 309 146 2157 116 3 0 chr1 937496 937798 -281255866 + AluSx SINE Alu 1 303 -9 2160 82 21 7 chr1 937806 938097 -281255567 + AluY SINE Alu 1 295 -16 2329 58 17 0 chr1 938800 939094 -281254570 - AluY SINE Alu -11 300 2 1380 186 69 9 chr1 939409 939743 -281253921 + Harlequin LTR ERV1 1378 1731 -4918 578 140 26 88 chr1 939730 940070 -281253594 + Harlequin LTR ERV1 704 1136 -5760 * 1883 121 24 17 chr1 940071 940369 -281253295 + AluY SINE Alu 2 301 -10 1302 158 3 81 chr1 940440 940549 -281253115 + Harlequin LTR ERV1 4187 4303 -3482 1998 113 0 53 chr1 940549 940869 -281252795 + AluSx SINE Alu 1 303 -9 1302 158 3 81 chr1 940869 941003 -281252661 + Harlequin LTR ERV1 4303 4404 -3381 2557 50 0 0 chr1 941003 941304 -281252360 - AluY SINE Alu -10 301 1 1302 158 3 81 chr1 941304 941369 -281252295 + Harlequin LTR ERV1 4404 4472 -3313 579 131 0 0 chr1 941336 941435 -281252229 + Harlequin LTR ERV1 1611 1709 -5187 * 2120 115 3 3 chr1 941435 941739 -281251925 + AluSx SINE Alu 1 304 -8 2386 65 20 0 chr1 941739 942033 -281251631 + AluY SINE Alu 1 300 -11 1016 115 48 0 chr1 942033 942220 -281251444 + LTR10A LTR ERV1 366 609 0 484 95 0 40 chr1 942220 942294 -281251370 + Alu SINE Alu 221 291 -19 894 78 0 8 chr1 942296 942424 -281251240 + FLAM_C SINE Alu 1 127 -16 1544 175 26 23 chr1 942516 942684 -281250980 - AluSx SINE Alu -3 309 138 2130 104 3 3 chr1 942684 942981 -281250683 - AluSq SINE Alu -14 299 3 1544 175 26 23 chr1 942981 943120 -281250544 - AluSx SINE Alu -174 138 1 1949 119 27 7 chr1 943129 943423 -281250241 - AluSg SINE Alu -10 300 1 1206 163 80 73 chr1 943499 943799 -281249865 + AluJo SINE Alu 1 302 -10 674 197 16 8 chr1 945012 945139 -281248525 + FLAM_C SINE Alu 1 128 -5 1875 153 33 0 chr1 945143 945468 -281248196 + AluJb SINE Alu 2 336 0 1945 113 25 0 chr1 945470 945745 -281247919 + AluSx SINE Alu 1 282 -30 2301 46 0 3 chr1 945899 946208 -281247456 + AluY SINE Alu 1 308 0 28 61 0 0 chr1 949375 949424 -281244240 + GC_rich Low_complexity Low_complexity 1 49 0 215 170 38 0 chr1 953177 953230 -281240434 + (CCCG)n Simple_repeat Simple_repeat 1 55 0 23 0 0 0 chr1 953291 953314 -281240350 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr1 953423 953447 -281240217 + (CTCG)n Simple_repeat Simple_repeat 1 24 0 202 205 26 39 chr1 956059 956137 -281237527 + (CGGGG)n Simple_repeat Simple_repeat 2 78 0 25 0 0 0 chr1 958402 958427 -281235237 + GC_rich Low_complexity Low_complexity 1 25 0 335 305 58 39 chr1 958942 959096 -281234568 + L1MEd LINE L1 14 170 -5949 1803 148 14 0 chr1 959099 959389 -281234275 + AluJb SINE Alu 1 294 -18 408 310 96 11 chr1 959588 959859 -281233805 + L1MEd LINE L1 620 913 -5206 916 208 0 0 chr1 959896 960055 -281233609 - AluJo/FRAM SINE Alu -7 295 137 1244 134 0 0 chr1 960058 960237 -281233427 - AluSq SINE Alu -1 312 134 2298 73 3 3 chr1 960237 960538 -281233126 - AluY SINE Alu -10 301 1 341 176 0 12 chr1 961042 961127 -281232537 + C-rich Low_complexity Low_complexity 5 88 0 253 181 6 66 chr1 961236 961402 -281232262 + G-rich Low_complexity Low_complexity 3 158 0 287 304 6 39 chr1 961473 961654 -281232010 + GA-rich Low_complexity Low_complexity 2 176 0 * 320 291 0 39 chr1 961529 961711 -281231953 + G-rich Low_complexity Low_complexity 4 178 0 2065 97 7 20 chr1 963238 963538 -281230126 - AluSc SINE Alu -13 296 1 1643 180 3 3 chr1 963617 963906 -281229758 - AluJb SINE Alu -22 290 2 2239 115 0 6 chr1 963967 964279 -281229385 - AluSq SINE Alu -3 310 1 1038 104 0 0 chr1 964496 964631 -281229033 + AluSq/x SINE Alu 2 136 -177 2014 119 3 22 chr1 964631 964943 -281228721 + AluSx SINE Alu 1 306 -6 1864 143 20 3 chr1 964946 965240 -281228424 + AluSx SINE Alu 1 299 -13 229 200 20 0 chr1 965297 965347 -281228317 - L2 LINE L2 -2 3270 3220 3119 152 56 2 chr1 965353 965946 -281227718 - MER41B LTR ERV1 -7 628 4 372 234 80 7 chr1 966068 966205 -281227459 + REP3 LTR ERV 122 268 -294 272 248 76 19 chr1 966232 966337 -281227327 - L2 LINE L2 -101 3212 3102 208 203 0 94 chr1 968013 968077 -281225587 + (CGGGG)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr1 968464 968485 -281225179 + GC_rich Low_complexity Low_complexity 1 21 0 3928 32 42 11 chr1 969866 970341 -281223323 + LTR2B LTR ERV1 1 490 0 5980 85 20 6 chr1 970341 971228 -281222436 + Harlequin LTR ERV1 1 900 -5996 5770 61 44 11 chr1 971214 971647 -281222017 + Harlequin LTR ERV1 1572 1989 -4907 * 2640 27 0 0 chr1 971647 971948 -281221716 - AluY SINE Alu -10 301 1 5770 61 44 11 chr1 971948 972485 -281221179 + Harlequin LTR ERV1 1989 2574 -4322 * 21774 119 15 7 chr1 972484 975997 -281217667 + Harlequin LTR ERV1 3352 6895 -1 3773 47 47 4 chr1 975997 976467 -281217197 + LTR2B LTR ERV1 1 490 0 225 289 87 59 chr1 976551 976867 -281216797 - L1M3e LINE L1 -5486 1544 656 646 268 36 54 chr1 977050 977180 -281216484 + MER74B LTR ERVL 211 342 -280 2284 104 0 0 chr1 977180 977487 -281216177 - AluY SINE Alu -4 307 1 2204 101 0 3 chr1 977487 977785 -281215879 - AluSq SINE Alu -16 297 1 646 268 36 54 chr1 977785 977945 -281215719 + MER74B LTR ERVL 341 498 -124 8041 57 2 0 chr1 977945 978912 -281214752 - LTR5 LTR ERVK 0 969 1 646 268 36 54 chr1 978912 978955 -281214709 + MER74B LTR ERVL 498 540 -82 1256 153 157 0 chr1 979030 979266 -281214398 + AluJb SINE Alu 21 293 -19 1755 131 75 0 chr1 979270 979552 -281214112 - AluSx SINE Alu -9 303 1 851 85 15 31 chr1 979555 979685 -281213979 - AluSp/q SINE Alu -19 294 167 1728 130 0 0 chr1 979702 979956 -281213708 + AluSx SINE Alu 59 312 0 304 214 208 45 chr1 980060 980238 -281213426 + L1MC4 LINE L1 7772 7978 -64 1670 143 0 21 chr1 980430 980717 -281212947 - AluJb SINE Alu -17 295 15 340 170 119 6 chr1 980765 981001 -281212663 + AluSg SINE Alu 6 301 0 26 82 0 0 chr1 981082 981143 -281212521 + GC_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 981644 981667 -281211997 + GC_rich Low_complexity Low_complexity 1 23 0 1885 140 20 0 chr1 982352 982645 -281211019 - AluSx SINE Alu -13 299 1 298 211 53 0 chr1 982648 982724 -281210940 - AluJ/FRAM SINE Alu 0 302 223 1633 182 19 0 chr1 982966 983273 -281210391 + 7SLRNA srpRNA srpRNA 1 313 -7 787 193 12 30 chr1 983273 983439 -281210225 + AluJo/FRAM SINE Alu 134 296 -16 1899 121 46 0 chr1 983444 983725 -281209939 + AluSg SINE Alu 1 294 -16 1911 122 4 0 chr1 983947 984225 -281209439 + AluY SINE Alu 28 306 -5 2395 69 0 3 chr1 984265 984571 -281209093 + AluY SINE Alu 1 305 -6 1551 167 20 30 chr1 984574 984873 -281208791 + AluSx SINE Alu 1 296 -16 2287 93 3 0 chr1 985177 985477 -281208187 + AluY SINE Alu 1 301 -10 2108 123 3 3 chr1 985563 985872 -281207792 - AluY SINE Alu -2 309 1 918 98 15 8 chr1 985884 986016 -281207648 - AluSp SINE Alu -180 133 1 219 167 42 21 chr1 987719 987767 -281205897 - L3 LINE CR1 -917 660 612 189 0 0 0 chr1 989414 989435 -281204229 + (CGG)n Simple_repeat Simple_repeat 2 22 0 278 238 24 12 chr1 989783 989867 -281203797 + (CCCCAG)n Simple_repeat Simple_repeat 6 90 0 609 196 43 43 chr1 990798 990842 -281202822 - MER20 DNA MER1_type 0 219 176 1504 195 17 14 chr1 990842 991139 -281202525 - AluJo SINE Alu -14 298 1 609 196 43 43 chr1 991139 991257 -281202407 - MER20 DNA MER1_type -42 177 57 814 215 6 0 chr1 991262 991420 -281202244 + FRAM SINE Alu 2 160 -16 2064 103 3 10 chr1 991557 991672 -281201992 + AluSq SINE Alu 21 135 -178 2471 43 7 3 chr1 991672 991972 -281201692 + AluY SINE Alu 1 301 -10 2064 103 3 10 chr1 991972 992147 -281201517 + AluSq SINE Alu 135 309 -4 2171 109 3 0 chr1 992154 992448 -281201216 + AluSx SINE Alu 2 296 -16 347 100 0 0 chr1 992458 992508 -281201156 - Alu SINE Alu -251 50 1 2101 96 6 38 chr1 992509 992822 -281200842 - AluSx SINE Alu -9 303 1 2044 116 0 23 chr1 993632 993942 -281199722 - AluSc SINE Alu -6 303 1 2270 117 0 0 chr1 993942 994251 -281199413 - AluSx SINE Alu -3 309 1 2141 105 7 0 chr1 994578 994874 -281198790 - AluSx SINE Alu -14 298 1 1439 178 14 51 chr1 998585 998750 -281194914 - AluJo SINE Alu -10 302 151 2196 93 7 0 chr1 998750 999041 -281194623 - AluY SINE Alu -18 293 1 1439 178 14 51 chr1 999041 999168 -281194496 - AluJo SINE Alu -161 151 21 1780 78 13 0 chr1 999339 999570 -281194094 - AluY SINE Alu -19 292 59 259 281 133 10 chr1 1199798 1200111 -280993553 + L1ME LINE L1 5265 5613 -508 2142 205 16 5 chr1 1200115 1200670 -280992994 + L1M4 LINE L1 3872 4432 -1714 257 362 0 0 chr1 1206111 1206288 -280987376 + G-rich Low_complexity Low_complexity 1 177 0 241 237 41 21 chr1 1207697 1207794 -280985870 - L1MC5 LINE L1 -32 7929 7831 428 269 47 0 chr1 1208074 1208223 -280985441 + MER58C DNA MER1_type 40 195 -20 354 331 40 20 chr1 1209460 1209608 -280984056 + MIR SINE MIR 9 159 -103 284 271 75 45 chr1 1209627 1209760 -280983904 - MIR SINE MIR -75 187 51 472 325 97 21 chr1 1210481 1210704 -280982960 + MIR SINE MIR 3 228 -28 268 293 187 8 chr1 1210773 1211019 -280982645 + L2 LINE L2 3015 3304 -9 35 71 0 0 chr1 1212187 1212257 -280981407 + GC_rich Low_complexity Low_complexity 1 70 0 2024 76 14 4 chr1 1213259 1213534 -280980130 + AluSx SINE Alu 21 298 -14 1927 144 3 0 chr1 1214717 1215015 -280978649 + AluSx SINE Alu 1 299 -13 2247 109 0 3 chr1 1215149 1215460 -280978204 - AluSq SINE Alu -3 310 1 379 193 9 9 chr1 1215567 1215676 -280977988 + GA-rich Low_complexity Low_complexity 4 112 0 2328 100 0 0 chr1 1215974 1216283 -280977381 - AluSq SINE Alu -4 309 1 1327 164 13 4 chr1 1216304 1216529 -280977135 - AluJb SINE Alu -1 311 85 231 293 35 17 chr1 1217922 1218038 -280975626 - MLT1H LTR MaLR -16 533 416 259 250 0 0 chr1 1218157 1218221 -280975443 - MLT1H LTR MaLR -375 174 111 2125 120 7 0 chr1 1218380 1218688 -280974976 + AluSx SINE Alu 1 310 -2 1327 213 161 20 chr1 1220309 1220718 -280972946 - MER34C LTR ERV1 -83 502 36 324 314 48 0 chr1 1220790 1220914 -280972750 - L2 LINE L2 -770 2544 2415 295 311 9 0 chr1 1221535 1221641 -280972023 + ERVL LTR ERVL 484 590 -5174 365 341 28 17 chr1 1221840 1222019 -280971645 - LTR41 LTR ERVL -590 183 3 213 311 212 0 chr1 1222669 1222801 -280970863 - MIR SINE MIR -23 239 80 1852 140 3 41 chr1 1224255 1224569 -280969095 + AluJo SINE Alu 1 302 -10 682 161 62 8 chr1 1224623 1224753 -280968911 - AluJo SINE Alu -175 137 1 1726 258 77 31 chr1 1224754 1225408 -280968256 - L1MB3 LINE L1 -46 6137 5454 266 333 17 8 chr1 1232813 1232930 -280960734 + (TG)n Simple_repeat Simple_repeat 1 118 0 2132 210 17 15 chr1 1232946 1233185 -280960479 - L1MB7 LINE L1 -345 5839 5602 2166 95 14 0 chr1 1233185 1233481 -280960183 - AluSp SINE Alu -13 300 1 2132 210 17 15 chr1 1233481 1233765 -280959899 - L1MB7 LINE L1 -582 5602 5315 509 163 0 0 chr1 1233778 1233858 -280959806 + AluJ/FLAM SINE Alu 1 80 -232 297 68 0 0 chr1 1233865 1233909 -280959755 + (TTG)n Simple_repeat Simple_repeat 2 45 0 842 199 0 0 chr1 1246248 1246404 -280947260 + FRAM SINE Alu 1 156 -20 1588 248 71 92 chr1 1246733 1247110 -280946554 + L1MB7 LINE L1 5098 5481 -703 1686 141 0 57 chr1 1247110 1247408 -280946256 - AluJb SINE Alu -17 295 15 1588 248 71 92 chr1 1247408 1248142 -280945522 + L1MB7 LINE L1 5481 6184 0 182 326 0 0 chr1 1251062 1251105 -280942559 + L2 LINE L2 3225 3267 -5 309 258 28 66 chr1 1253910 1254092 -280939572 + (CCCTG)n Simple_repeat Simple_repeat 5 179 0 949 134 0 0 chr1 1255139 1255273 -280938391 + AluSq/x SINE Alu 2 135 -177 2219 113 6 0 chr1 1255273 1255584 -280938080 + AluSp SINE Alu 1 313 0 1864 28 0 0 chr1 1256006 1256221 -280937443 + AluY SINE Alu 83 297 -14 362 258 33 46 chr1 1256577 1256728 -280936936 + MER45B DNA AcHobo 69 217 -823 435 233 27 82 chr1 1256905 1257051 -280936613 + MER45B DNA AcHobo 648 785 -255 231 188 0 0 chr1 1257048 1257096 -280936568 - Alu SINE Alu -3 299 252 * 2230 74 0 17 chr1 1257199 1257498 -280936166 - AluY SINE Alu -17 294 1 1262 157 0 65 chr1 1257499 1257760 -280935904 + AluJb SINE Alu 68 311 -1 2519 262 38 39 chr1 1257771 1258951 -280934713 - L1MB7 LINE L1 -841 5305 4172 1365 190 90 46 chr1 1258969 1259041 -280934623 - L1M4 LINE L1 -630 5623 5556 2109 113 0 10 chr1 1259041 1259352 -280934312 - AluY SINE Alu -3 308 1 2155 101 0 3 chr1 1259352 1259639 -280934025 - AluSc SINE Alu -17 292 7 1365 190 90 46 chr1 1259639 1259787 -280933877 - L1M4 LINE L1 -697 5556 5416 2332 189 97 5 chr1 1259787 1260231 -280933433 + MER66B LTR ERV1 2 486 0 1365 190 90 46 chr1 1260231 1260493 -280933171 - L1M4 LINE L1 -837 5416 5096 1947 107 46 7 chr1 1260493 1260774 -280932890 + AluSq SINE Alu 1 292 -21 1365 190 90 46 chr1 1260774 1260937 -280932727 - L1M4 LINE L1 -1157 5096 4942 927 146 0 0 chr1 1260954 1261084 -280932580 - FLAM_C SINE Alu -3 130 1 228 67 0 0 chr1 1261084 1261114 -280932550 + (T)n Simple_repeat Simple_repeat 1 30 0 723 188 17 23 chr1 1261139 1261315 -280932349 - L1M4 LINE L1 -2386 3829 3655 387 230 119 16 chr1 1261315 1261441 -280932223 - L1M4 LINE L1 -3446 2769 2631 331 221 35 0 chr1 1261499 1261585 -280932079 - L1M4 LINE L1 -3541 2674 2586 2015 136 0 38 chr1 1261586 1261902 -280931762 + AluSx SINE Alu 2 305 -7 6091 27 1 0 chr1 1261934 1262721 -280930943 - L1PA3 LINE L1 -3 6152 5365 * 10525 24 9 0 chr1 1262713 1264094 -280929570 + L1PA3 LINE L1 4003 5396 -750 2947 264 114 50 chr1 1264091 1264608 -280929056 - L1MEc LINE L1 -3632 2583 2101 * 210 37 0 0 chr1 1264608 1264635 -280929029 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1904 136 7 27 chr1 1264645 1264946 -280928718 - AluJo SINE Alu -17 295 1 2947 264 114 50 chr1 1264946 1265537 -280928127 - L1MEc LINE L1 -4122 2093 1541 1806 94 0 12 chr1 1265537 1265781 -280927883 - AluSx SINE Alu -10 302 62 2947 264 114 50 chr1 1265781 1265982 -280927682 - L1MEc LINE L1 -4674 1541 1354 2345 162 27 39 chr1 1265982 1266174 -280927490 + Tigger2a DNA MER2_type 1 194 -2514 2170 96 10 0 chr1 1266174 1266467 -280927197 - AluSg SINE Alu -12 298 3 2345 162 27 39 chr1 1266467 1266713 -280926951 + Tigger2a DNA MER2_type 194 434 0 2947 264 114 50 chr1 1266713 1266822 -280926842 - L1MEc LINE L1 -4861 1354 1253 2136 110 7 3 chr1 1266822 1267146 -280926518 - AluSx SINE Alu 0 312 1 2947 264 114 50 chr1 1267146 1268118 -280925546 - L1MEc LINE L1 -4962 1253 55 2050 119 10 10 chr1 1268508 1268820 -280924844 - AluSx SINE Alu 0 312 1 255 259 0 0 chr1 1269096 1269150 -280924514 - L2 LINE L2 -8 3264 3211 23 0 0 0 chr1 1273134 1273157 -280920507 + GC_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 1273324 1273352 -280920312 + GC_rich Low_complexity Low_complexity 1 28 0 322 250 0 0 chr1 1273639 1273703 -280919961 + MIR SINE MIR 103 166 -96 1703 126 0 8 chr1 1273863 1274118 -280919546 - AluJb SINE Alu -39 273 21 1120 101 0 0 chr1 1274269 1274418 -280919246 - AluSq/x SINE Alu -163 149 1 300 326 47 0 chr1 1276059 1276188 -280917476 - MLT1J LTR MaLR -139 372 238 413 306 31 12 chr1 1276408 1276568 -280917096 - MLT1J LTR MaLR -139 372 210 330 320 0 0 chr1 1279860 1279960 -280913704 + (TG)n Simple_repeat Simple_repeat 1 100 0 526 223 23 0 chr1 1279977 1280152 -280913512 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 229 154 39 0 chr1 1280268 1280320 -280913344 + L1MC4a LINE L1 6720 6773 -1035 517 351 4 9 chr1 1280467 1280698 -280912966 + L1MC4 LINE L1 7435 7664 -378 2235 98 0 0 chr1 1282090 1282396 -280911268 + AluSx SINE Alu 5 310 -2 400 132 15 15 chr1 1282420 1282488 -280911176 - FRAM SINE Alu -81 95 28 234 0 0 0 chr1 1282916 1282942 -280910722 + (TG)n Simple_repeat Simple_repeat 1 26 0 244 183 50 0 chr1 1284760 1284820 -280908844 + (CCCCAG)n Simple_repeat Simple_repeat 6 68 0 735 148 15 37 chr1 1285741 1285968 -280907696 + FLAM_C SINE Alu 6 143 0 2260 95 10 0 chr1 1287051 1287356 -280906308 - AluSc SINE Alu -1 308 1 183 353 88 48 chr1 1288064 1288313 -280905351 - L2 LINE L2 -536 2778 2520 239 311 83 67 chr1 1288989 1289301 -280904363 - L2 LINE L2 -572 2742 2426 375 245 5 54 chr1 1296772 1296956 -280896708 + G-rich Low_complexity Low_complexity 6 180 0 425 321 87 60 chr1 1301239 1301808 -280891856 - L1 LINE L1 -2694 4154 1499 1564 143 112 28 chr1 1302872 1303159 -280890505 + AluJb SINE Alu 1 311 -1 880 220 31 135 chr1 1303170 1303497 -280890167 + AluYb8 SINE Alu 25 317 -1 370 55 36 0 chr1 1303497 1303552 -280890112 + (GA)n Simple_repeat Simple_repeat 1 57 0 614 99 12 56 chr1 1303552 1303714 -280889950 + (GGAA)n Simple_repeat Simple_repeat 4 158 0 295 128 12 47 chr1 1303834 1303920 -280889744 + GA-rich Low_complexity Low_complexity 3 85 0 183 213 0 0 chr1 1311776 1311851 -280881813 + GA-rich Low_complexity Low_complexity 2 76 0 240 35 0 0 chr1 1313710 1313739 -280879925 + (CCCCCG)n Simple_repeat Simple_repeat 5 33 0 258 281 0 0 chr1 1313789 1313853 -280879811 + G-rich Low_complexity Low_complexity 1 64 0 932 89 0 0 chr1 1316851 1316975 -280876689 - AluSq/x SINE Alu -189 124 1 1902 120 3 30 chr1 1321301 1321602 -280872062 - AluSg SINE Alu -17 293 1 238 143 0 48 chr1 1321702 1321744 -280871920 + MER5A DNA MER1_type 110 149 -40 688 176 7 44 chr1 1321835 1321971 -280871693 + FLAM_C SINE Alu 1 131 -2 311 247 93 33 chr1 1322972 1323122 -280870542 + MLT1A1 LTR MaLR 95 253 -112 263 330 6 34 chr1 1323717 1323959 -280869705 + (CGTG)n Simple_repeat Simple_repeat 1 235 0 2395 78 6 3 chr1 1324058 1324404 -280869260 - THE1A LTR MaLR -8 347 1 758 135 0 0 chr1 1324404 1324508 -280869156 + AluSp SINE Alu 110 213 -100 2308 59 7 0 chr1 1325884 1326174 -280867490 + AluY SINE Alu 7 298 -13 1622 181 26 29 chr1 1332445 1332755 -280860909 + AluJo SINE Alu 1 309 -3 321 308 22 0 chr1 1332759 1332850 -280860814 + GA-rich Low_complexity Low_complexity 4 96 0 2090 280 108 22 chr1 1335011 1335697 -280857967 + L1MC4 LINE L1 366 1184 -5537 2108 136 0 3 chr1 1335697 1336007 -280857657 - AluJb SINE Alu -3 309 1 2090 280 108 22 chr1 1336007 1336426 -280857238 + L1MC4 LINE L1 1184 1566 -5155 2230 99 3 3 chr1 1336580 1336892 -280856772 + AluSx SINE Alu 1 312 0 737 168 23 15 chr1 1336990 1337121 -280856543 + AluJb SINE Alu 1 132 -180 1986 107 3 31 chr1 1337123 1337442 -280856222 + AluSg SINE Alu 1 310 0 227 219 122 12 chr1 1337457 1337539 -280856125 + L1MC4 LINE L1 1873 1963 -4577 923 130 0 0 chr1 1337666 1337797 -280855867 - FLAM_C SINE Alu -2 131 1 701 196 30 60 chr1 1337806 1337974 -280855690 - AluSg/x SINE Alu -12 298 136 943 241 106 75 chr1 1337981 1338157 -280855507 + L1MC4 LINE L1 3945 4114 -2426 2162 111 3 0 chr1 1338157 1338454 -280855210 + AluSx SINE Alu 4 301 -11 943 241 106 75 chr1 1338454 1338488 -280855176 + L1MC4 LINE L1 4114 4145 -2395 2073 130 3 3 chr1 1338488 1338795 -280854869 + AluSx SINE Alu 1 307 -5 943 241 106 75 chr1 1338795 1339131 -280854533 + L1MC4 LINE L1 4145 4509 -2031 2230 256 63 20 chr1 1339860 1340850 -280852814 + L1MC4 LINE L1 4457 5404 -1154 2027 145 7 0 chr1 1340850 1341160 -280852504 + AluJb SINE Alu 1 312 0 2230 256 63 20 chr1 1341160 1342152 -280851512 + L1MC4 LINE L1 5404 6558 0 608 289 11 21 chr1 1342364 1342551 -280851113 - MER58A DNA MER1_type 0 224 40 466 272 68 0 chr1 1342553 1342700 -280850964 + MER5A DNA MER1_type 24 180 -9 2031 116 20 0 chr1 1342845 1343139 -280850525 + AluSg SINE Alu 2 301 -9 2062 122 3 0 chr1 1343649 1343977 -280849687 + AluSp SINE Alu 1 313 0 735 352 153 16 chr1 1344368 1345013 -280848651 + HAL1 LINE L1 828 1561 -946 1924 148 0 3 chr1 1348575 1348872 -280844792 - AluSx SINE Alu -16 296 1 791 155 8 0 chr1 1350266 1350395 -280843269 + AluJo SINE Alu 5 134 -178 342 358 102 20 chr1 1350968 1351222 -280842442 + L1MC4 LINE L1 7768 8042 0 2188 86 7 3 chr1 1351478 1351770 -280841894 + AluSx SINE Alu 1 293 -19 2257 100 7 0 chr1 1354444 1354743 -280838921 - AluSg SINE Alu -9 301 1 2667 217 68 19 chr1 1355268 1355589 -280838075 + L1MB3 LINE L1 5258 5562 -621 2140 129 3 0 chr1 1355589 1355900 -280837764 + AluSx SINE Alu 1 312 0 2084 133 0 10 chr1 1355910 1356219 -280837445 + AluSx SINE Alu 1 306 -6 2667 217 68 19 chr1 1356219 1356641 -280837023 + L1MB3 LINE L1 5570 6049 -134 720 272 22 0 chr1 1356658 1356886 -280836778 - L1 LINE L1 -3654 2492 2260 316 235 265 0 chr1 1356938 1357040 -280836624 + L1ME LINE L1 5312 5440 -681 2226 71 4 0 chr1 1357219 1357526 -280836138 + AluY SINE Alu 1 308 0 241 185 0 98 chr1 1357537 1357629 -280836035 + L1ME LINE L1 5625 5707 -414 1507 179 52 10 chr1 1358675 1358966 -280834698 + AluJo SINE Alu 1 303 -9 321 125 0 0 chr1 1359483 1359539 -280834125 + (CA)n Simple_repeat Simple_repeat 1 56 0 293 258 24 24 chr1 1359664 1359788 -280833876 + L1MC5 LINE L1 7660 7783 -178 2263 61 10 3 chr1 1359792 1360085 -280833579 + AluY SINE Alu 1 295 -16 190 233 47 0 chr1 1364032 1364075 -280829589 + L2 LINE L2 352 396 -2918 2197 79 3 7 chr1 1364777 1365068 -280828596 + AluSc SINE Alu 1 290 -19 2162 121 0 6 chr1 1366138 1366452 -280827212 + AluSx SINE Alu 1 312 0 330 187 131 0 chr1 1368679 1368774 -280824890 - MIR SINE MIR -83 125 41 198 143 0 0 chr1 1370490 1370525 -280823139 + (CA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr1 1372527 1372556 -280821108 + GC_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 1372731 1372781 -280820883 + GC_rich Low_complexity Low_complexity 1 50 0 206 179 0 15 chr1 1372941 1373008 -280820656 + (CTCGG)n Simple_repeat Simple_repeat 5 70 0 30 77 0 0 chr1 1373008 1373073 -280820591 + GC_rich Low_complexity Low_complexity 1 65 0 37 23 0 0 chr1 1373429 1373473 -280820191 + GC_rich Low_complexity Low_complexity 1 44 0 1543 145 16 92 chr1 1374339 1374656 -280819008 + AluJb SINE Alu 3 295 -17 2355 58 7 0 chr1 1374657 1374948 -280818716 + AluY SINE Alu 1 293 -18 2301 108 0 0 chr1 1374959 1375266 -280818398 + AluSx SINE Alu 3 309 -3 209 302 47 19 chr1 1376259 1376365 -280817299 - L2 LINE L2 -255 3058 2950 183 156 0 0 chr1 1376445 1376477 -280817187 + (CCCTG)n Simple_repeat Simple_repeat 5 36 0 2310 91 3 3 chr1 1376628 1376936 -280816728 - AluSq SINE Alu -5 308 1 471 241 87 100 chr1 1376959 1377004 -280816660 - LTR16C LTR ERVL 0 491 447 2176 95 0 3 chr1 1377004 1377325 -280816339 - AluSx SINE Alu 0 320 1 933 110 16 0 chr1 1377335 1377462 -280816202 - FLAM_C SINE Alu -4 129 1 471 241 87 100 chr1 1377462 1377645 -280816019 - LTR16C LTR ERVL -53 438 254 408 252 122 98 chr1 1377698 1377984 -280815680 + L1MC4a LINE L1 6442 6734 -1074 1387 100 5 0 chr1 1377986 1378176 -280815488 - AluY SINE Alu -13 298 108 1631 176 40 10 chr1 1378995 1379296 -280814368 - AluSq SINE Alu -3 310 1 1243 156 5 0 chr1 1379582 1379781 -280813883 - AluSx SINE Alu -81 231 32 739 274 55 20 chr1 1379788 1380318 -280813346 - L1ME2 LINE L1 -47 6117 5549 378 250 15 76 chr1 1380669 1380801 -280812863 + L1MC4 LINE L1 6966 7089 -953 1800 167 10 6 chr1 1380842 1381153 -280812511 + AluJo SINE Alu 1 312 0 906 191 0 0 chr1 1381153 1381315 -280812349 + AluJo/FRAM SINE Alu 132 293 -19 182 91 30 0 chr1 1381317 1381350 -280812314 + GA-rich Low_complexity Low_complexity 1 34 0 963 312 148 10 chr1 1381355 1381958 -280811706 + L1MC4 LINE L1 7284 7990 -5 2355 85 0 0 chr1 1382184 1382489 -280811175 - AluY SINE Alu -6 305 1 2217 101 0 10 chr1 1382490 1382796 -280810868 - AluSx SINE Alu -9 303 1 2143 72 0 38 chr1 1382807 1383124 -280810540 - AluY SINE Alu 0 306 1 450 302 105 43 chr1 1383329 1383816 -280809848 + HAL1 LINE L1 1749 2265 -242 307 289 41 29 chr1 1384110 1384139 -280809525 + L1M4 LINE L1 2797 2824 -3322 2059 120 36 0 chr1 1384139 1384440 -280809224 + AluSx SINE Alu 1 312 0 307 289 41 29 chr1 1384440 1384652 -280809012 + L1M4 LINE L1 2824 3041 -3105 2266 106 0 0 chr1 1384724 1385035 -280808629 - AluY SINE Alu 0 311 1 2192 114 0 0 chr1 1385035 1385333 -280808331 - AluSx SINE Alu -13 299 1 2309 98 0 0 chr1 1385346 1385653 -280808011 - AluY SINE Alu -4 307 1 207 69 0 0 chr1 1386531 1386560 -280807104 + (CACGC)n Simple_repeat Simple_repeat 4 32 0 2438 47 0 17 chr1 1390486 1390787 -280802877 + AluY SINE Alu 6 301 -10 1091 68 0 0 chr1 1390803 1390936 -280802728 + AluSq/x SINE Alu 1 133 -180 2502 48 0 16 chr1 1390939 1391249 -280802415 + AluY SINE Alu 1 305 -6 2422 72 0 25 chr1 1391265 1391401 -280802263 + AluSq SINE Alu 1 139 -174 2380 68 0 10 chr1 1391401 1391709 -280801955 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 1391709 1391740 -280801924 + (TA)n Simple_repeat Simple_repeat 2 32 0 2422 72 0 25 chr1 1391740 1391923 -280801741 + AluSq SINE Alu 137 313 0 292 250 0 26 chr1 1395101 1395177 -280798487 + (CACG)n Simple_repeat Simple_repeat 3 76 0 213 39 0 0 chr1 1395178 1395204 -280798460 + (CA)n Simple_repeat Simple_repeat 2 27 0 277 395 26 21 chr1 1395596 1395786 -280797878 + MIR3 SINE MIR 4 194 -14 2477 47 7 0 chr1 1396258 1396555 -280797109 - AluY SINE Alu -12 299 1 182 152 0 22 chr1 1397748 1397794 -280795870 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 356 253 11 59 chr1 1397867 1398053 -280795611 + G-rich Low_complexity Low_complexity 3 179 0 * 422 124 15 144 chr1 1397924 1398126 -280795538 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 259 345 0 0 chr1 1398069 1398246 -280795418 + G-rich Low_complexity Low_complexity 1 177 0 * 21 36 0 0 chr1 1398496 1398524 -280795140 + GC_rich Low_complexity Low_complexity 1 28 0 243 350 98 12 chr1 1399200 1399363 -280794301 + MIR SINE MIR 47 223 -39 695 120 28 28 chr1 1400221 1400329 -280793335 + AluJo SINE Alu 34 141 -171 1629 173 43 17 chr1 1400329 1400451 -280793213 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr1 1400451 1400472 -280793192 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1629 173 43 17 chr1 1400472 1400650 -280793014 + AluJb SINE Alu 118 309 -3 697 167 0 0 chr1 1400656 1400764 -280792900 + AluSg/x SINE Alu 191 298 -14 2400 84 0 0 chr1 1401058 1401367 -280792297 - AluY SINE Alu 0 311 3 2120 124 0 7 chr1 1401369 1401667 -280791997 - AluSx SINE Alu -16 296 1 761 276 128 43 chr1 1402441 1402681 -280790983 - MLT1C LTR MaLR -7 460 242 2154 132 3 0 chr1 1402681 1402991 -280790673 - AluSq SINE Alu -2 311 1 2288 104 0 3 chr1 1402999 1403307 -280790357 - AluSx SINE Alu -3 309 3 761 276 128 43 chr1 1403307 1403478 -280790186 - MLT1C LTR MaLR -231 236 4 270 0 0 0 chr1 1403683 1403713 -280789951 + (GGCTG)n Simple_repeat Simple_repeat 4 33 0 1897 171 0 0 chr1 1406237 1406547 -280787117 - AluSx SINE Alu -2 310 1 1481 177 79 4 chr1 1406549 1406826 -280786838 - AluJo SINE Alu -14 298 1 194 71 0 71 chr1 1408282 1408324 -280785340 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 33 66 0 0 chr1 1408390 1408451 -280785213 + GC_rich Low_complexity Low_complexity 1 61 0 333 212 28 34 chr1 1408719 1408898 -280784766 + GA-rich Low_complexity Low_complexity 1 178 0 328 250 12 30 chr1 1408926 1409090 -280784574 + GA-rich Low_complexity Low_complexity 3 163 0 198 220 34 25 chr1 1409121 1409239 -280784425 + GA-rich Low_complexity Low_complexity 5 123 0 312 367 20 27 chr1 1409265 1409415 -280784249 + HAL1b LINE L1 1 149 -1199 1632 136 57 4 chr1 1411000 1411264 -280782400 + AluJo SINE Alu 1 278 -34 2353 52 24 0 chr1 1412144 1412434 -280781230 - AluSx SINE Alu -15 297 1 309 204 118 11 chr1 1413817 1413910 -280779754 - MER5A DNA MER1_type -5 184 82 2139 114 3 10 chr1 1414516 1414824 -280778840 - AluJo SINE Alu -6 306 1 2635 26 0 7 chr1 1414837 1415146 -280778518 - AluY SINE Alu 0 311 5 371 184 18 53 chr1 1415292 1415406 -280778258 + MLT1A2 LTR MaLR 111 220 -154 515 271 140 4 chr1 1415821 1416050 -280777614 + L1MC1 LINE L1 5840 6099 -234 185 65 32 0 chr1 1416153 1416184 -280777480 + (CAGGG)n Simple_repeat Simple_repeat 4 35 0 274 183 57 3 chr1 1416186 1416260 -280777404 + L1MC1 LINE L1 6261 6333 0 2433 71 3 0 chr1 1416270 1416581 -280777083 + AluSx SINE Alu 1 312 0 463 273 100 49 chr1 1419968 1420331 -280773333 + MLT1A1 LTR MaLR 4 358 -7 232 173 0 31 chr1 1420333 1420461 -280773203 + (CTCA)n Simple_repeat Simple_repeat 1 124 0 1150 103 13 0 chr1 1420471 1420627 -280773037 - AluSg/x SINE Alu -21 289 132 2177 94 0 16 chr1 1420627 1420936 -280772728 - AluSx SINE Alu -8 304 1 332 161 0 23 chr1 1420946 1421033 -280772631 + (CTCA)n Simple_repeat Simple_repeat 2 86 0 225 297 30 10 chr1 1422607 1422708 -280770956 - L2 LINE L2 -358 2956 2854 280 291 0 51 chr1 1423269 1423427 -280770237 + (TCCG)n Simple_repeat Simple_repeat 1 150 0 249 280 43 0 chr1 1425267 1425360 -280768304 + L1M4 LINE L1 5613 5709 -475 461 300 132 26 chr1 1425363 1425786 -280767878 + L1MB7 LINE L1 5671 6138 -46 270 326 0 0 chr1 1427380 1427478 -280766186 - MER47B DNA MER2_type 0 418 321 455 288 119 3 chr1 1427489 1427808 -280765856 - MER47B DNA MER2_type -51 367 12 477 162 42 6 chr1 1428344 1428511 -280765153 + (TTGGGG)n Simple_repeat Simple_repeat 2 174 0 302 326 0 41 chr1 1430857 1431029 -280762635 + (CACG)n Simple_repeat Simple_repeat 4 168 0 244 240 40 13 chr1 1431984 1432059 -280761605 + L1MB3 LINE L1 5413 5489 -682 327 266 23 0 chr1 1432117 1432213 -280761451 + L1MB3 LINE L1 5512 5613 -561 2156 101 7 7 chr1 1432213 1432509 -280761155 + AluSx SINE Alu 2 297 -15 327 266 23 0 chr1 1432509 1432521 -280761143 + L1MB3 LINE L1 5613 5623 -551 684 91 0 0 chr1 1432521 1432609 -280761055 - AluY SINE Alu -13 298 211 1732 250 41 30 chr1 1432731 1433298 -280760366 + L1MB3 LINE L1 5609 6181 -2 207 270 11 60 chr1 1433949 1434134 -280759530 + C-rich Low_complexity Low_complexity 2 177 0 * 311 253 18 42 chr1 1434005 1434171 -280759493 + (CCCA)n Simple_repeat Simple_repeat 1 162 0 732 207 39 6 chr1 1435477 1435656 -280758008 + MER58A DNA MER1_type 40 224 0 2151 110 0 13 chr1 1435869 1436179 -280757485 + AluSx SINE Alu 3 308 -4 1866 148 0 0 chr1 1437349 1437632 -280756032 - AluJb SINE Alu -23 289 7 635 242 62 0 chr1 1438058 1438236 -280755428 + MER58A DNA MER1_type 36 224 0 398 299 119 21 chr1 1438241 1438435 -280755229 - MIR SINE MIR -22 240 28 1261 208 144 5 chr1 1439129 1439518 -280754146 - MER54A LTR ERVL 0 901 459 321 289 21 48 chr1 1439635 1439822 -280753842 + L1M4 LINE L1 3729 3910 -2236 2345 76 0 29 chr1 1439851 1440166 -280753498 - AluY SINE Alu -5 306 1 627 297 36 89 chr1 1440960 1441027 -280752637 + L1M4 LINE L1 4369 4438 -1708 831 152 0 8 chr1 1441027 1441159 -280752505 + FLAM_C SINE Alu 1 131 -2 627 297 36 89 chr1 1441159 1441343 -280752321 + L1M4 LINE L1 4438 4600 -1546 2090 130 0 0 chr1 1441343 1441643 -280752021 + AluSx SINE Alu 1 300 -12 627 297 36 89 chr1 1441643 1441727 -280751937 + L1M4 LINE L1 4600 4687 -1459 411 21 0 0 chr1 1443502 1443550 -280750114 + (CA)n Simple_repeat Simple_repeat 2 49 0 1559 80 0 0 chr1 1444662 1444861 -280748803 + AluY SINE Alu 105 303 -8 1009 207 176 100 chr1 1445805 1445941 -280747723 + MER68 LTR ERV1 4 128 -434 678 136 88 32 chr1 1445941 1446066 -280747598 + FLAM_C SINE Alu 2 133 0 1009 207 176 100 chr1 1446066 1446077 -280747587 + MER68 LTR ERV1 128 137 -425 1811 149 40 7 chr1 1446077 1446378 -280747286 + AluSx SINE Alu 1 311 -1 1009 207 176 100 chr1 1446378 1446443 -280747221 + MER68 LTR ERV1 137 196 -366 1736 244 129 11 chr1 1446443 1446907 -280746757 + MLT2B1 LTR ERVL 2 520 0 1009 207 176 100 chr1 1446907 1447204 -280746460 + MER68 LTR ERV1 196 554 -8 253 289 11 44 chr1 1447402 1447492 -280746172 + L2 LINE L2 3185 3271 -1 241 225 12 12 chr1 1447934 1448014 -280745650 + (CACCAT)n Simple_repeat Simple_repeat 4 83 0 535 234 0 22 chr1 1448066 1448250 -280745414 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 705 204 2 19 chr1 1448269 1448681 -280744983 + (CACCAT)n Simple_repeat Simple_repeat 1 405 0 351 309 66 7 chr1 1448770 1448906 -280744758 - MIR SINE MIR -86 176 33 846 184 44 0 chr1 1449110 1449268 -280744396 - AluJb SINE Alu -55 257 93 268 299 23 0 chr1 1450263 1450350 -280743314 + MER91A DNA MER1_type 16 104 -92 1732 261 101 47 chr1 1450519 1451236 -280742428 + L1MB5 LINE L1 5353 6117 -57 2151 112 3 0 chr1 1451236 1451532 -280742132 - AluSx SINE Alu -15 297 1 1732 261 101 47 chr1 1451532 1451594 -280742070 + L1MB5 LINE L1 6117 6174 0 1526 170 3 80 chr1 1451632 1451956 -280741708 + AluJb SINE Alu 1 299 -13 783 200 48 24 chr1 1451962 1452127 -280741537 + FRAM SINE Alu 1 168 -8 735 278 15 0 chr1 1452475 1452673 -280740991 + Tigger3(Golem) DNA MER2_type 2827 3027 -2 2466 46 0 13 chr1 1453600 1453906 -280739758 - AluY SINE Alu -9 302 1 1717 142 21 21 chr1 1453915 1454204 -280739460 - AluJo SINE Alu -23 289 1 201 350 73 36 chr1 1455012 1455149 -280738515 + MER5A DNA MER1_type 13 154 -35 313 240 40 0 chr1 1455191 1455291 -280738373 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 534 308 20 20 chr1 1455306 1455652 -280738012 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 260 268 26 0 chr1 1455666 1455819 -280737845 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 276 330 25 0 chr1 1455833 1455951 -280737713 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 219 263 25 0 chr1 1455965 1456083 -280737581 + (TGGA)n Simple_repeat Simple_repeat 4 124 0 385 321 28 11 chr1 1456098 1456443 -280737221 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 447 305 29 0 chr1 1456457 1456631 -280737033 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 410 316 23 17 chr1 1456652 1456829 -280736835 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 386 188 41 0 chr1 1456871 1457041 -280736623 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 1937 132 0 17 chr1 1458363 1458659 -280735005 - AluJb SINE Alu -21 291 1 2508 58 0 3 chr1 1460962 1461274 -280732390 + AluY SINE Alu 1 311 0 197 273 0 0 chr1 1461523 1461567 -280732097 + L2 LINE L2 3208 3251 -21 2407 90 0 0 chr1 1462602 1462912 -280730752 + AluSx SINE Alu 1 310 -2 1990 114 4 0 chr1 1463286 1463559 -280730105 - AluSx SINE Alu -38 274 1 2120 105 0 13 chr1 1463571 1463875 -280729789 - AluSx SINE Alu -12 300 1 260 277 142 14 chr1 1463977 1464118 -280729546 - L1MEd LINE L1 -5382 737 579 2231 94 0 7 chr1 1464629 1464938 -280728726 - AluSg1 SINE Alu -2 307 1 1990 108 49 0 chr1 1465304 1465592 -280728072 - AluSx SINE Alu -10 302 1 484 262 159 0 chr1 1466640 1466768 -280726896 + MLT1C LTR MaLR 192 298 -169 1833 242 28 74 chr1 1466768 1467347 -280726317 + MLT2B3 LTR ERVL 1 552 -2 484 262 159 0 chr1 1467347 1467451 -280726213 + MLT1C LTR MaLR 298 461 -6 215 339 0 43 chr1 1470584 1470770 -280722894 + G-rich Low_complexity Low_complexity 1 178 0 292 192 110 0 chr1 1471249 1471322 -280722342 + MLT1B LTR MaLR 5 85 -289 * 314 204 13 26 chr1 1471315 1471402 -280722262 + MLT1B LTR MaLR 265 375 -15 2378 49 7 0 chr1 1472140 1472428 -280721236 + AluY SINE Alu 6 295 -16 788 138 0 43 chr1 1472785 1472923 -280720741 - AluSq/x SINE Alu -181 132 1 1106 282 65 8 chr1 1473385 1473754 -280719910 + MLT2C1 LTR ERVL 1 390 -7 1905 162 0 9 chr1 1474040 1474355 -280719309 + AluJb SINE Alu 1 312 0 466 259 72 96 chr1 1474581 1474944 -280718720 - L1MC3 LINE L1 -67 7718 7365 365 263 66 6 chr1 1479565 1479733 -280713931 - MLT1A2 LTR MaLR 0 374 205 445 326 0 0 chr1 1479838 1480013 -280713651 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 491 312 0 0 chr1 1480039 1480458 -280713206 + (CCCTAA)n Simple_repeat Simple_repeat 1 419 0 413 326 11 0 chr1 1480481 1480659 -280713005 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 350 296 23 17 chr1 1480751 1480927 -280712737 + (CACCAT)n Simple_repeat Simple_repeat 2 178 0 * 467 326 0 0 chr1 1480918 1481093 -280712571 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 325 317 6 22 chr1 1481105 1481288 -280712376 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 545 181 19 9 chr1 1481323 1481428 -280712236 - MLT1A2 LTR MaLR -268 106 1 479 282 138 0 chr1 1481428 1481616 -280712048 + MLT-int LTR MaLR 1496 1709 -26 610 331 117 48 chr1 1481619 1481655 -280712009 + L1MC/D LINE L1 1263 1295 -5426 1796 134 15 0 chr1 1481655 1481924 -280711740 + AluSq SINE Alu 2 274 -39 610 331 117 48 chr1 1481924 1482171 -280711493 + L1MC/D LINE L1 1295 1523 -5198 2120 90 40 10 chr1 1482171 1482472 -280711192 + AluSq SINE Alu 1 310 -3 610 331 117 48 chr1 1482472 1482805 -280710859 + L1MC/D LINE L1 1523 1986 -4735 1219 134 0 0 chr1 1482805 1482992 -280710672 + AluSq SINE Alu 127 313 0 428 274 79 51 chr1 1483212 1483253 -280710411 + L1MC/D LINE L1 2255 2293 -4247 2255 122 0 0 chr1 1483253 1483565 -280710099 + AluSq SINE Alu 1 312 -1 428 274 79 51 chr1 1483565 1484011 -280709653 + L1MC/D LINE L1 2293 2725 -3815 396 0 0 0 chr1 1484011 1484055 -280709609 + (CA)n Simple_repeat Simple_repeat 1 44 0 428 274 79 51 chr1 1484055 1484132 -280709532 + L1MC/D LINE L1 2725 2792 -3748 2372 76 0 0 chr1 1484132 1484433 -280709231 + AluY SINE Alu 1 301 -10 428 274 79 51 chr1 1484433 1484473 -280709191 + L1MC/D LINE L1 2792 2829 -3711 * 801 283 93 67 chr1 1484444 1484473 -280709191 + L1MC/D LINE L1 4064 4091 -2449 2298 77 16 16 chr1 1484473 1484784 -280708880 + AluSx SINE Alu 1 311 -1 801 283 93 67 chr1 1484784 1485529 -280708135 + L1MC/D LINE L1 4091 4879 -1661 1906 129 11 4 chr1 1485529 1485808 -280707856 + AluJo SINE Alu 1 281 -31 801 283 93 67 chr1 1485808 1486176 -280707488 + L1MC/D LINE L1 4879 5236 -1304 260 319 56 0 chr1 1486217 1486361 -280707303 + L1MC/D LINE L1 5558 5709 -831 233 136 0 23 chr1 1486375 1486419 -280707245 + L1M LINE L1 5700 5742 -996 2246 251 67 14 chr1 1486602 1487292 -280706372 + MER21B LTR ERV1 14 739 -124 2386 88 0 0 chr1 1487978 1488285 -280705379 - AluSc SINE Alu -2 307 1 2164 102 0 7 chr1 1489787 1490084 -280703580 + AluSq SINE Alu 1 296 -12 204 67 0 0 chr1 1490084 1490114 -280703550 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 236 325 17 51 chr1 1493186 1493303 -280700361 - MIR SINE MIR -47 215 103 655 247 36 10 chr1 1493495 1493927 -280699737 + MLT1D LTR MaLR 35 505 0 189 146 0 24 chr1 1494354 1494395 -280699269 - L2 LINE L2 -206 3066 3027 327 365 14 28 chr1 1495104 1495249 -280698415 + L1MC/D LINE L1 6006 6148 -2054 2229 91 10 0 chr1 1496972 1497269 -280696395 + AluSq SINE Alu 1 300 -13 682 269 143 11 chr1 1498366 1498730 -280694934 + LTR52 LTR ERVL 2 413 -8 698 139 123 0 chr1 1498949 1499071 -280694593 - FRAM SINE Alu -39 137 1 1384 145 110 4 chr1 1499519 1499774 -280693890 + AluJo SINE Alu 1 282 -30 2347 94 0 0 chr1 1500040 1500349 -280693315 + AluY SINE Alu 1 309 -2 345 374 67 5 chr1 1500918 1501113 -280692551 - MIR SINE MIR -16 246 40 207 69 0 0 chr1 1501132 1501161 -280692503 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 35 0 0 chr1 1501634 1501663 -280692001 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 1503328 1503348 -280690316 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2224 85 0 0 chr1 1503689 1503972 -280689692 + AluY SINE Alu 1 332 0 355 61 0 0 chr1 1503972 1504021 -280689643 + (CAAAA)n Simple_repeat Simple_repeat 2 145 0 2581 150 23 48 chr1 1504367 1504928 -280688736 + LTR10A LTR ERV1 1 547 -62 933 172 0 0 chr1 1506736 1506916 -280686748 + G-rich Low_complexity Low_complexity 1 180 0 405 141 0 0 chr1 1506916 1506987 -280686677 + (GGGGA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr1 1509962 1509984 -280683680 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 1510729 1510758 -280682906 + AT_rich Low_complexity Low_complexity 1 29 0 650 266 77 0 chr1 1510962 1511210 -280682454 + L1M3 LINE L1 5283 5549 -634 739 130 84 0 chr1 1511212 1511343 -280682321 + L1MB2 LINE L1 6029 6170 -1 2184 102 0 16 chr1 1511349 1511654 -280682010 + AluSq SINE Alu 1 300 -13 546 271 62 71 chr1 1512442 1512767 -280680897 + MLT1C LTR MaLR 5 326 -64 595 189 27 0 chr1 1512769 1512880 -280680784 - FLAM_A SINE Alu -5 137 24 260 261 29 0 chr1 1512886 1512955 -280680709 + MLT1C LTR MaLR 310 380 -10 858 266 88 10 chr1 1512955 1513252 -280680412 + MLT1A1 LTR MaLR 3 322 -43 195 42 0 0 chr1 1513732 1513756 -280679908 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 231 209 0 0 chr1 1513823 1513866 -280679798 + L1ME4a LINE L1 6074 6116 -5 242 358 12 0 chr1 1514206 1514287 -280679377 - L2 LINE L2 -7 3306 3225 476 354 54 57 chr1 1515268 1515305 -280678359 + L1MC4a LINE L1 6151 6187 -1621 2186 123 0 0 chr1 1515305 1515607 -280678057 + AluSx SINE Alu 1 302 -10 476 354 54 57 chr1 1515607 1515883 -280677781 + L1MC4a LINE L1 6187 6463 -1345 283 348 55 8 chr1 1516042 1516278 -280677386 + L1MC4 LINE L1 6780 7026 -1016 300 160 0 0 chr1 1516282 1516332 -280677332 + Alu SINE Alu 1 50 -252 1976 124 3 10 chr1 1516332 1516630 -280677034 + AluSx SINE Alu 6 301 -11 1989 124 7 13 chr1 1517769 1518075 -280675589 - AluJo SINE Alu -8 304 1 303 292 39 0 chr1 1518346 1518476 -280675188 + Charlie1 DNA MER1_type 19 153 -2608 1166 248 58 100 chr1 1518482 1518539 -280675125 + Charlie1 DNA MER1_type 2083 2141 -620 2159 100 0 26 chr1 1518539 1518848 -280674816 - AluSx SINE Alu -11 301 1 1166 248 58 100 chr1 1518848 1519479 -280674185 + Charlie1 DNA MER1_type 2141 2742 -19 264 281 9 18 chr1 1519866 1519980 -280673684 + C-rich Low_complexity Low_complexity 1 113 0 492 251 86 29 chr1 1520111 1520286 -280673378 - MER63A DNA MER1_type -25 185 1 1260 286 133 10 chr1 1521475 1522100 -280671564 + L1MC3 LINE L1 6898 7599 -186 210 357 84 32 chr1 1523219 1523373 -280670291 - MIR SINE MIR -76 186 25 * 438 303 118 22 chr1 1523370 1523548 -280670116 + MIR SINE MIR 14 208 -54 1294 266 189 36 chr1 1523618 1523692 -280669972 + HAL1 LINE L1 973 1034 -1473 2483 50 0 0 chr1 1523692 1523989 -280669675 + AluY SINE Alu 1 297 -14 1294 266 189 36 chr1 1523989 1525205 -280668459 + HAL1 LINE L1 1034 2461 -46 22 0 0 0 chr1 1525237 1525259 -280668405 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 3 0 chr1 1526070 1526373 -280667291 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 1528860 1528881 -280664783 + GC_rich Low_complexity Low_complexity 1 21 0 764 235 76 11 chr1 1530061 1530532 -280663132 + MER74A LTR ERVL 25 554 -4 198 186 47 0 chr1 1530574 1530617 -280663047 + MIR SINE MIR 28 72 -190 473 252 97 0 chr1 1530805 1530960 -280662704 + MER58 DNA MER1_type 64 233 -108 228 262 27 57 chr1 1531569 1531734 -280661930 - MIR SINE MIR -15 247 43 224 253 93 93 chr1 1533332 1533494 -280660170 - MIR3 SINE MIR -46 162 1 339 269 74 27 chr1 1534177 1534326 -280659338 + MLT1D LTR MaLR 1 156 -349 1031 279 45 5 chr1 1535503 1535929 -280657735 + L1MB3 LINE L1 2568 3010 -3136 715 185 31 8 chr1 1535937 1536067 -280657597 - AluJb SINE Alu -179 133 1 362 238 58 10 chr1 1536067 1536199 -280657465 + L1MB3 LINE L1 3007 3147 -2999 1673 140 4 0 chr1 1536199 1536449 -280657215 + AluSx SINE Alu 1 251 -61 362 238 58 10 chr1 1536449 1536488 -280657176 + L1MB3 LINE L1 3147 3183 -2963 * 6819 212 30 38 chr1 1536479 1537138 -280656526 + L1MB3 LINE L1 3489 4152 -2031 2439 59 0 3 chr1 1537138 1537444 -280656220 - AluY SINE Alu -6 305 1 6819 212 30 38 chr1 1537444 1538694 -280654970 + L1MB3 LINE L1 4152 5410 -773 2112 128 0 3 chr1 1538694 1538999 -280654665 + AluSx SINE Alu 1 304 -8 6819 212 30 38 chr1 1538999 1539228 -280654436 + L1MB3 LINE L1 5410 5639 -544 2137 131 0 0 chr1 1539228 1539534 -280654130 + AluJb SINE Alu 1 306 -6 6819 212 30 38 chr1 1539534 1540053 -280653611 + L1MB3 LINE L1 5639 6133 -50 1653 164 13 30 chr1 1540053 1540358 -280653306 + AluSx SINE Alu 1 300 -12 6819 212 30 38 chr1 1540358 1540409 -280653255 + L1MB3 LINE L1 6133 6183 0 543 271 90 24 chr1 1540404 1540659 -280653005 + L1MB5 LINE L1 5814 6085 -89 * 211 309 43 0 chr1 1542350 1542444 -280651220 + L2 LINE L2 2220 2317 -997 812 158 0 0 chr1 1543747 1543867 -280649797 + AluSq/x SINE Alu 1 120 -193 2138 121 3 3 chr1 1543922 1544229 -280649435 - AluSx SINE Alu -5 307 1 1578 161 16 71 chr1 1544354 1544538 -280649126 - AluJo SINE Alu -9 293 131 2032 120 3 13 chr1 1544538 1544674 -280648990 + AluSx SINE Alu 1 137 -175 2250 81 0 7 chr1 1544674 1544969 -280648695 + AluSc SINE Alu 1 293 -16 2032 120 3 13 chr1 1544969 1545132 -280648532 + AluSx SINE Alu 137 297 -15 1578 161 16 71 chr1 1545132 1545257 -280648407 - AluJo SINE Alu -171 131 1 2541 54 0 10 chr1 1545813 1546126 -280647538 + AluY SINE Alu 1 310 -1 2421 57 0 0 chr1 1547602 1547901 -280645763 + AluY SINE Alu 2 300 -11 1830 121 43 0 chr1 1549444 1549726 -280643938 + AluSg SINE Alu 1 294 -16 398 264 0 3 chr1 1550484 1550792 -280642872 + (TG)n Simple_repeat Simple_repeat 1 306 0 210 350 68 0 chr1 1551097 1551214 -280642450 - MIR SINE MIR -78 184 60 331 329 5 91 chr1 1551908 1551971 -280641693 + L1ME LINE L1 5497 5564 -557 2555 49 3 0 chr1 1551971 1552279 -280641385 - AluY SINE Alu -2 309 1 331 329 5 91 chr1 1552279 1552425 -280641239 + L1ME LINE L1 5564 5688 -433 562 168 0 58 chr1 1552563 1552754 -280640910 + (CA)n Simple_repeat Simple_repeat 1 180 0 184 80 0 0 chr1 1554108 1554133 -280639531 + (TTTTG)n Simple_repeat Simple_repeat 1 90 0 2166 86 7 0 chr1 1554133 1554411 -280639253 - AluY SINE Alu -31 280 1 1562 128 0 0 chr1 1554411 1554628 -280639036 - AluSx SINE Alu -95 217 1 1631 114 4 0 chr1 1555072 1555299 -280638365 - AluSq SINE Alu -85 228 1 436 341 130 9 chr1 1555466 1555689 -280637975 - MIR SINE MIR 0 262 13 596 266 95 37 chr1 1555901 1556280 -280637384 + LTR16C LTR ERVL 90 490 -1 1314 238 109 3 chr1 1556779 1557189 -280636475 - MLT1C LTR MaLR 0 467 12 1171 223 40 9 chr1 1557481 1557804 -280635860 + MLT1A1 LTR MaLR 1 333 -32 1556 167 30 0 chr1 1557863 1558132 -280635532 - AluJo SINE Alu -6 306 30 434 309 85 13 chr1 1559001 1559237 -280634427 + ERVL LTR ERVL 2042 2294 -3470 2112 96 4 0 chr1 1559782 1560086 -280633578 + AluSc SINE Alu 1 305 0 2345 97 0 3 chr1 1560097 1560407 -280633257 + AluSc SINE Alu 1 309 0 834 134 0 8 chr1 1560559 1560686 -280632978 + FLAM_C SINE Alu 1 126 -17 958 256 99 6 chr1 1560903 1561267 -280632397 + MLT1C LTR MaLR 53 450 -17 531 0 0 0 chr1 1562164 1562223 -280631441 + (TTATG)n Simple_repeat Simple_repeat 2 60 0 1952 108 29 4 chr1 1562223 1562501 -280631163 - AluSg SINE Alu -25 285 1 1797 167 7 0 chr1 1563170 1563470 -280630194 - AluJb SINE Alu -10 302 1 2324 90 0 0 chr1 1563741 1564040 -280629624 - AluSq SINE Alu -14 299 1 419 287 74 0 chr1 1564390 1564512 -280629152 + MIR3 SINE MIR 33 163 -45 1211 176 124 11 chr1 1566216 1566483 -280627181 + AluSg1 SINE Alu 1 297 -12 1858 141 40 0 chr1 1566483 1566781 -280626883 + AluSx SINE Alu 1 310 -2 257 260 207 13 chr1 1566986 1567136 -280626528 + MLT1A1 LTR MaLR 390 568 -25 1404 254 42 34 chr1 1567161 1567479 -280626185 - L1ME1 LINE L1 -269 5966 5641 2466 77 0 3 chr1 1567479 1567792 -280625872 - AluSx SINE Alu 0 312 1 1404 254 42 34 chr1 1567792 1567950 -280625714 - L1ME1 LINE L1 -594 5641 5486 2243 110 3 0 chr1 1567951 1568260 -280625404 - AluSx SINE Alu -2 310 1 213 108 0 0 chr1 1568270 1568307 -280625357 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 712 147 0 9 chr1 1568310 1568419 -280625245 - FLAM_C SINE Alu -25 118 11 655 223 75 63 chr1 1568437 1568709 -280624955 - L1ME1 LINE L1 -752 5463 5216 643 264 22 4 chr1 1568754 1568985 -280624679 - L1ME1 LINE L1 -6123 273 39 2161 100 0 16 chr1 1569018 1569329 -280624335 + AluSx SINE Alu 1 306 -6 444 345 65 5 chr1 1569434 1569634 -280624030 - L1MCa LINE L1 -4813 1613 1402 748 347 79 29 chr1 1569652 1570131 -280623533 - HERV16 LTR ERVL -4192 804 302 2292 77 0 10 chr1 1570135 1570458 -280623206 - AluY SINE Alu 0 323 4 2404 69 0 3 chr1 1570461 1570764 -280622900 - AluY SINE Alu -4 307 6 544 236 55 83 chr1 1570773 1571193 -280622471 + Charlie2 DNA MER1_type 2368 2775 -87 902 140 7 7 chr1 1571200 1571343 -280622321 + FRAM SINE Alu 4 146 -30 440 208 125 0 chr1 1572654 1572774 -280620890 - HERV16 LTR ERVL -4859 137 3 425 308 41 56 chr1 1572826 1573164 -280620500 - LTR16B LTR ERVL -50 414 82 1267 146 13 50 chr1 1573319 1573479 -280620185 - AluJb SINE Alu -14 298 134 2201 93 7 0 chr1 1573479 1573770 -280619894 - AluSc SINE Alu -15 294 2 2080 132 0 0 chr1 1573771 1574067 -280619597 - AluSg SINE Alu -14 296 1 1267 146 13 50 chr1 1574067 1574143 -280619521 - AluJb SINE Alu -177 135 69 582 335 14 7 chr1 1574145 1574420 -280619244 - L1MC4 LINE L1 -998 7044 6768 443 229 0 0 chr1 1574479 1574575 -280619089 + MER3 DNA MER1_type 38 133 -76 2120 114 7 3 chr1 1574578 1574885 -280618779 - AluSq SINE Alu -5 308 1 599 109 11 0 chr1 1574953 1575045 -280618619 - AluSg/x SINE Alu -1 308 216 1087 162 113 0 chr1 1575049 1575278 -280618386 + AluSx SINE Alu 58 312 0 718 205 0 32 chr1 1575286 1575442 -280618222 + FRAM SINE Alu 1 151 -15 865 140 12 30 chr1 1577771 1577935 -280615729 - AluJo SINE Alu -151 161 1 2383 81 3 0 chr1 1577944 1578254 -280615410 - AluY SINE Alu 0 311 1 1552 262 27 20 chr1 1578312 1578823 -280614841 + L1MB5 LINE L1 5659 6173 -1 1021 196 149 6 chr1 1580608 1580950 -280612714 + MLT1C LTR MaLR 6 396 -71 500 283 12 12 chr1 1581949 1582115 -280611549 + MER46C DNA MER2_type 1 166 -172 2273 81 0 3 chr1 1583501 1583797 -280609867 + AluY SINE Alu 1 295 -16 1614 191 3 13 chr1 1583808 1584107 -280609557 + AluJo SINE Alu 2 297 -15 627 265 58 51 chr1 1584108 1584222 -280609442 - L1ME LINE L1 -585 5585 5473 2395 61 0 3 chr1 1584222 1584517 -280609147 - AluY SINE Alu -17 294 1 627 265 58 51 chr1 1584517 1584659 -280609005 - L1ME LINE L1 -697 5473 5327 1240 77 12 6 chr1 1584662 1584831 -280608833 - AluSg/x SINE Alu -20 290 121 873 130 0 125 chr1 1584896 1585080 -280608584 - FRAM SINE Alu -15 161 1 317 244 125 12 chr1 1585082 1585242 -280608422 - L1ME LINE L1 -815 5331 5154 563 234 115 40 chr1 1585569 1585795 -280607869 - HAL1 LINE L1 -950 1557 1315 570 235 47 6 chr1 1586027 1586197 -280607467 - Charlie1b DNA MER1_type -1 522 346 285 169 200 0 chr1 1586215 1586280 -280607384 - Charlie1b DNA MER1_type -292 231 154 2205 102 7 3 chr1 1586398 1586703 -280606961 - AluSq SINE Alu -7 306 1 217 328 35 53 chr1 1586705 1586876 -280606788 + L2 LINE L2 1999 2166 -1148 213 288 82 14 chr1 1587024 1587170 -280606494 + L2 LINE L2 2862 3017 -296 926 167 13 9 chr1 1590847 1591161 -280602503 + (CTCA)n Simple_repeat Simple_repeat 1 315 0 2139 121 0 3 chr1 1591908 1592205 -280601459 + AluSg SINE Alu 2 297 -13 22 56 0 0 chr1 1592311 1592347 -280601317 + AT_rich Low_complexity Low_complexity 1 36 0 2340 81 0 0 chr1 1594239 1594535 -280599129 - AluSx SINE Alu -16 296 1 2253 119 0 0 chr1 1595021 1595331 -280598333 - AluSx SINE Alu -2 310 1 339 218 26 0 chr1 1595334 1595412 -280598252 - AluJ/FRAM SINE Alu 0 302 223 2283 101 0 0 chr1 1595475 1595782 -280597882 - AluSx SINE Alu -5 307 1 22 0 0 0 chr1 1596057 1596079 -280597585 + GC_rich Low_complexity Low_complexity 1 22 0 236 286 86 19 chr1 1596838 1596943 -280596721 - L1ME3A LINE L1 -40 6130 6019 336 357 96 43 chr1 1597044 1597328 -280596336 - L1MC5 LINE L1 -33 7928 7614 1980 112 39 3 chr1 1597328 1597613 -280596051 - AluSx SINE Alu -17 295 1 336 357 96 43 chr1 1597613 1597743 -280595921 - L1MC5 LINE L1 -347 7614 7492 1353 280 64 22 chr1 1597750 1598382 -280595282 - L1MC4 LINE L1 -6 8036 7291 2409 62 10 0 chr1 1598382 1598690 -280594974 + AluY SINE Alu 1 311 0 838 215 61 65 chr1 1599156 1599536 -280594128 + MLT1C LTR MaLR 47 390 0 229 320 39 16 chr1 1599653 1599781 -280593883 - L1P LINE L1 -780 5385 5255 2315 80 3 0 chr1 1599823 1600123 -280593541 - AluY SINE Alu -10 301 1 2215 104 0 0 chr1 1600174 1600472 -280593192 - AluSx SINE Alu -14 298 1 319 367 30 60 chr1 1600473 1600672 -280592992 - L1M4 LINE L1 -975 5171 4979 480 254 99 87 chr1 1600745 1601100 -280592564 - L1M4 LINE L1 -1304 4842 4484 2324 87 0 10 chr1 1601100 1601412 -280592252 - AluY SINE Alu 0 311 3 728 319 27 42 chr1 1601442 1601714 -280591950 - L1MC5 LINE L1 -35 7926 7663 2311 98 0 0 chr1 1601714 1602011 -280591653 - AluSx SINE Alu -15 297 1 728 319 27 42 chr1 1602011 1602220 -280591444 - L1MC5 LINE L1 -298 7663 7452 706 257 88 38 chr1 1602231 1602560 -280591104 - L1M4 LINE L1 -1638 4508 4152 2323 88 3 0 chr1 1602560 1602866 -280590798 - AluSp SINE Alu -6 307 1 706 257 88 38 chr1 1602866 1603054 -280590610 - L1M4 LINE L1 -1994 4152 3975 2368 103 0 0 chr1 1603056 1603368 -280590296 - AluSx SINE Alu 0 312 1 2089 143 0 0 chr1 1603724 1604032 -280589632 + AluSx SINE Alu 1 308 -4 2432 65 3 0 chr1 1604073 1604381 -280589283 - AluY SINE Alu -2 309 1 2245 89 24 0 chr1 1604497 1604790 -280588874 - AluSx SINE Alu -10 302 3 368 312 103 24 chr1 1604903 1605243 -280588421 - HAL1 LINE L1 -2136 371 5 1124 148 0 6 chr1 1605815 1605997 -280587667 - AluJb SINE Alu -1 311 131 2519 58 0 0 chr1 1605997 1606308 -280587356 - AluY SINE Alu 0 311 1 623 182 0 45 chr1 1606427 1606559 -280587105 + AluJb SINE Alu 2 127 -185 1685 130 22 4 chr1 1606659 1606936 -280586728 + AluSg SINE Alu 26 307 -3 1226 193 100 15 chr1 1606936 1607267 -280586397 - MSTB LTR MaLR -66 360 2 919 253 58 16 chr1 1607267 1607565 -280586099 + MLT1A1 LTR MaLR 55 365 0 267 254 30 0 chr1 1607671 1607763 -280585901 + L1MEc LINE L1 1178 1233 -4886 370 294 109 42 chr1 1607937 1608175 -280585489 + L1M4 LINE L1 3652 3905 -2241 280 208 94 38 chr1 1608188 1608294 -280585370 - MER31A LTR ERV1 -21 464 353 1450 114 5 0 chr1 1610432 1610633 -280583031 + AluSg/x SINE Alu 66 267 -43 1007 169 0 6 chr1 1610633 1610843 -280582821 + AluSp SINE Alu 120 328 0 1091 184 5 19 chr1 1610843 1611049 -280582615 - AluJb SINE Alu -27 285 83 436 241 17 0 chr1 1611050 1611082 -280582582 - L1M4 LINE L1 -457 5727 5697 2096 118 3 3 chr1 1611082 1611378 -280582286 - AluSx SINE Alu -16 296 1 436 241 17 0 chr1 1611378 1611461 -280582203 - L1M4 LINE L1 -487 5697 5610 1948 155 7 0 chr1 1611461 1611757 -280581907 - AluSx SINE Alu -14 298 1 1220 172 48 99 chr1 1611757 1612071 -280581593 - AluJb SINE Alu -14 298 1 2369 66 0 10 chr1 1612072 1612373 -280581291 - AluY SINE Alu -13 298 1 804 164 0 46 chr1 1612373 1612525 -280581139 - AluJo SINE Alu -167 145 1 187 308 77 0 chr1 1612981 1613059 -280580605 - L2 LINE L2 -939 2375 2292 2328 51 10 3 chr1 1614090 1614384 -280579280 - AluY SINE Alu -15 296 1 1621 133 10 47 chr1 1614384 1614685 -280578979 - AluSx SINE Alu -22 290 1 369 210 43 43 chr1 1615539 1615677 -280577987 + (CGGGG)n Simple_repeat Simple_repeat 4 141 0 2474 47 0 0 chr1 1615783 1616081 -280577583 + AluSx SINE Alu 1 298 -14 1680 153 36 19 chr1 1616430 1616737 -280576927 - AluJb SINE Alu 0 312 1 962 96 75 91 chr1 1618368 1618526 -280575138 - MLT2D LTR ERVL -137 277 121 2196 88 0 23 chr1 1618526 1618831 -280574833 - AluY SINE Alu -13 298 1 962 96 75 91 chr1 1618831 1618871 -280574793 - MLT2D LTR ERVL -293 121 82 541 246 15 0 chr1 1618871 1619005 -280574659 + L1M3 LINE L1 5686 5821 -350 2177 102 3 0 chr1 1619130 1619424 -280574240 - AluY SINE Alu -16 295 1 2290 75 0 3 chr1 1619424 1619718 -280573946 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 1619718 1620012 -280573652 - AluSx SINE Alu -13 299 1 1040 278 49 11 chr1 1620015 1620482 -280573182 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 1620619 1620717 -280572947 - MER81 DNA DNA -15 99 1 203 280 56 0 chr1 1620794 1620937 -280572727 + (TAGG)n Simple_repeat Simple_repeat 4 154 0 * 329 292 39 7 chr1 1620895 1621049 -280572615 + (TATG)n Simple_repeat Simple_repeat 4 162 0 218 396 0 0 chr1 1621167 1621321 -280572343 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 275 291 53 0 chr1 1621292 1621517 -280572147 + (TATG)n Simple_repeat Simple_repeat 1 236 0 180 0 0 0 chr1 1621807 1621827 -280571837 + (CA)n Simple_repeat Simple_repeat 2 21 0 2379 96 3 0 chr1 1621875 1622187 -280571477 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 1622203 1622512 -280571152 + AluSc SINE Alu 1 309 0 2055 130 0 10 chr1 1622561 1622869 -280570795 + AluJb SINE Alu 1 305 -7 275 237 99 30 chr1 1623252 1623383 -280570281 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 1623401 1623561 -280570103 + L1M4 LINE L1 4836 5008 -1138 251 269 2 7 chr1 1623823 1624253 -280569411 + (CA)n Simple_repeat Simple_repeat 1 428 0 460 298 0 0 chr1 1624271 1624432 -280569232 + (CA)n Simple_repeat Simple_repeat 1 161 0 230 228 0 11 chr1 1624457 1624549 -280569115 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 1624985 1625135 -280568529 + (TG)n Simple_repeat Simple_repeat 1 150 0 2376 61 0 19 chr1 1626739 1627077 -280566587 + AluY SINE Alu 1 311 0 370 250 43 0 chr1 1627659 1627775 -280565889 + L1M4 LINE L1 4897 5017 -1129 381 259 91 15 chr1 1628523 1628720 -280564944 + MER89 LTR ERV1 272 483 -76 768 261 123 23 chr1 1629621 1630012 -280563652 - MLT1D LTR MaLR -7 498 69 2247 85 3 0 chr1 1630518 1630811 -280562853 - AluSx SINE Alu -18 294 1 1515 130 9 4 chr1 1630931 1631161 -280562503 + AluJb SINE Alu 1 231 -81 2215 119 0 0 chr1 1631452 1631762 -280561902 + AluJo SINE Alu 1 310 -2 335 228 0 33 chr1 1631771 1631951 -280561713 + (TG)n Simple_repeat Simple_repeat 1 174 0 338 309 16 24 chr1 1631956 1632082 -280561582 + (CGTG)n Simple_repeat Simple_repeat 2 126 0 2221 111 0 0 chr1 1633939 1634236 -280559428 - AluSg SINE Alu -13 297 1 403 111 0 0 chr1 1634343 1634406 -280559258 - AluJo SINE Alu -7 295 233 678 254 94 11 chr1 1634410 1634470 -280559194 - AluJo SINE Alu -116 196 142 252 100 0 0 chr1 1634470 1634510 -280559154 + (TA)n Simple_repeat Simple_repeat 2 41 0 678 254 94 11 chr1 1634510 1634630 -280559034 - AluJo SINE Alu -170 142 1 2304 93 6 10 chr1 1634650 1634962 -280558702 - AluY SINE Alu 0 311 1 326 169 31 0 chr1 1634962 1635027 -280558637 + MSTB LTR MaLR 358 424 -2 1793 149 3 29 chr1 1635652 1635960 -280557704 - AluJb SINE Alu -12 300 1 197 320 33 33 chr1 1637730 1637852 -280555812 + L2 LINE L2 3166 3287 -26 2218 100 0 19 chr1 1640417 1640727 -280552937 - AluSx SINE Alu -3 309 6 514 344 104 51 chr1 1640752 1640990 -280552674 - HAL1b LINE L1 -1033 3317 3093 1976 136 7 13 chr1 1640990 1641298 -280552366 - AluJb SINE Alu -6 306 1 514 344 104 51 chr1 1641298 1641406 -280552258 - HAL1b LINE L1 -1257 3093 2992 2274 79 3 13 chr1 1641406 1641710 -280551954 - AluSq SINE Alu -12 301 1 514 344 104 51 chr1 1641710 1641747 -280551917 - HAL1b LINE L1 -1358 2992 1 423 348 112 38 chr1 1642579 1643540 -280550124 - L1MEd LINE L1 -4863 1256 224 1709 132 16 42 chr1 1644339 1644649 -280549015 + AluJo SINE Alu 5 306 -6 333 339 52 64 chr1 1645107 1645340 -280548324 - L1MC4 LINE L1 0 8042 7813 281 253 99 0 chr1 1646938 1647029 -280546635 - MER91B DNA MER1_type -90 100 1 1834 134 21 3 chr1 1649139 1649429 -280544235 - AluJb SINE Alu -17 295 1 1355 298 66 59 chr1 1649431 1649488 -280544176 - L1ME LINE L1 -579 5652 5597 832 266 19 10 chr1 1649488 1649695 -280543969 - MER3 DNA MER1_type 0 209 1 1355 298 66 59 chr1 1649695 1650335 -280543329 - L1ME LINE L1 -634 5597 4963 2272 91 0 3 chr1 1650335 1650633 -280543031 + AluSq SINE Alu 3 299 -14 1355 298 66 59 chr1 1650633 1650972 -280542692 - L1ME LINE L1 -1268 4963 4605 1746 157 17 10 chr1 1650972 1651266 -280542398 + AluJo SINE Alu 1 296 -16 1355 298 66 59 chr1 1651266 1651328 -280542336 - L1ME LINE L1 -1626 4605 4545 295 145 29 14 chr1 1651328 1651397 -280542267 + CT-rich Low_complexity Low_complexity 3 72 0 273 281 47 0 chr1 1651411 1651574 -280542090 - L1MEc LINE L1 -3921 2322 2163 1609 104 0 4 chr1 1651677 1651908 -280541756 + AluSq SINE Alu 1 230 -83 658 141 0 0 chr1 1652049 1652141 -280541523 - AluS SINE Alu -221 92 1 2484 237 60 50 chr1 1652175 1652566 -280541098 + L1ME1 LINE L1 4528 4914 -1252 1855 141 115 12 chr1 1652566 1652906 -280540758 + THE1C LTR MaLR 1 375 0 2484 237 60 50 chr1 1652906 1653295 -280540369 + L1ME1 LINE L1 4914 5298 -868 2250 91 0 13 chr1 1653295 1653593 -280540071 + AluSq SINE Alu 6 299 -14 2484 237 60 50 chr1 1653593 1654426 -280539238 + L1ME1 LINE L1 5298 6166 0 1863 146 17 3 chr1 1654475 1654763 -280538901 + AluSx SINE Alu 1 292 -20 363 152 0 43 chr1 1654763 1654855 -280538809 + GA-rich Low_complexity Low_complexity 1 88 0 808 100 5 58 chr1 1654861 1655051 -280538613 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1315 147 19 0 chr1 1655139 1655363 -280538301 + AluJb SINE Alu 97 324 0 403 217 70 10 chr1 1655369 1655489 -280538175 + AluJo SINE Alu 1 112 -190 216 111 0 0 chr1 1655489 1655525 -280538139 + (TA)n Simple_repeat Simple_repeat 2 37 0 403 217 70 10 chr1 1655525 1655652 -280538012 + AluJo SINE Alu 112 295 -7 2221 111 0 0 chr1 1655759 1656056 -280537608 + AluSg SINE Alu 1 297 -13 324 318 16 24 chr1 1657761 1657887 -280535777 + (CACG)n Simple_repeat Simple_repeat 2 126 0 327 238 0 28 chr1 1657892 1658073 -280535591 + (CA)n Simple_repeat Simple_repeat 1 176 0 2184 121 0 0 chr1 1658078 1658385 -280535279 - AluJo SINE Alu -5 307 1 1501 135 9 4 chr1 1658675 1658905 -280534759 - AluJb SINE Alu -81 231 1 2261 82 3 0 chr1 1659025 1659318 -280534346 + AluSx SINE Alu 1 294 -18 777 261 123 23 chr1 1659824 1660215 -280533449 + MLT1D LTR MaLR 69 498 -7 360 300 148 22 chr1 1661544 1661814 -280531850 + HAL1 LINE L1 903 1206 -1301 189 0 0 0 chr1 1662030 1662051 -280531613 + (A)n Simple_repeat Simple_repeat 1 21 0 2190 88 0 36 chr1 1662057 1662365 -280531299 - AluSg1 SINE Alu -12 297 1 579 243 32 46 chr1 1662370 1662588 -280531076 + L1MB2 LINE L1 5941 6155 -16 2333 74 0 13 chr1 1662599 1662911 -280530753 - AluY SINE Alu -3 308 1 231 173 0 0 chr1 1673563 1673615 -280520049 + (CAG)n Simple_repeat Simple_repeat 3 54 0 603 105 28 50 chr1 1679029 1679210 -280514454 + GA-rich Low_complexity Low_complexity 1 177 0 902 140 7 7 chr1 1680335 1680478 -280513186 - FRAM SINE Alu -30 146 4 544 236 55 83 chr1 1680485 1680905 -280512759 - Charlie2 DNA MER1_type -87 2775 2368 2377 73 0 3 chr1 1680914 1681216 -280512448 + AluY SINE Alu 6 306 -5 2306 68 0 40 chr1 1681219 1681540 -280512124 + AluY SINE Alu 4 311 0 2280 98 0 13 chr1 1681542 1681858 -280511806 + AluSx SINE Alu 1 312 0 2543 52 0 3 chr1 1681876 1682183 -280511481 + AluY SINE Alu 1 306 -5 2076 124 3 3 chr1 1682471 1682777 -280510887 - AluY SINE Alu -5 306 1 2305 71 0 3 chr1 1682777 1683071 -280510593 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 1683071 1683365 -280510299 - AluSx SINE Alu -13 299 1 1028 281 49 11 chr1 1683368 1683835 -280509829 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 1683972 1684070 -280509594 - MER81 DNA DNA -15 99 1 277 307 40 7 chr1 1684214 1684364 -280509300 + (TATG)n Simple_repeat Simple_repeat 4 158 0 225 395 0 0 chr1 1684450 1684602 -280509062 + (TG)n Simple_repeat Simple_repeat 2 153 0 266 312 52 0 chr1 1684642 1684796 -280508868 + (CGTA)n Simple_repeat Simple_repeat 2 163 0 265 391 0 0 chr1 1684821 1685000 -280508664 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 318 53 7 chr1 1685006 1685157 -280508507 + (TACG)n Simple_repeat Simple_repeat 4 161 0 * 236 317 48 0 chr1 1685134 1685301 -280508363 + (TATG)n Simple_repeat Simple_repeat 4 178 0 202 348 17 0 chr1 1685370 1685488 -280508176 + (TATG)n Simple_repeat Simple_repeat 3 122 0 180 0 0 0 chr1 1685753 1685773 -280507891 + (CA)n Simple_repeat Simple_repeat 2 21 0 2394 93 3 0 chr1 1685821 1686133 -280507531 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 1686149 1686458 -280507206 + AluSc SINE Alu 1 309 0 2023 134 0 10 chr1 1686507 1686814 -280506850 + AluJb SINE Alu 1 304 -8 275 237 99 30 chr1 1687197 1687328 -280506336 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 1687346 1687506 -280506158 + L1M4 LINE L1 4836 5008 -1138 409 278 3 0 chr1 1687799 1688409 -280505255 + (CA)n Simple_repeat Simple_repeat 1 612 0 230 228 0 11 chr1 1688434 1688526 -280505138 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 1688962 1689112 -280504552 + (TG)n Simple_repeat Simple_repeat 1 150 0 820 117 0 83 chr1 1689838 1689983 -280503681 - FLAM_C SINE Alu 0 133 1 2197 87 3 7 chr1 1690659 1690957 -280502707 - AluSq SINE Alu -16 297 1 258 192 0 19 chr1 1690959 1691011 -280502653 + L3 LINE CR1 1369 1419 -158 1291 164 18 0 chr1 1691600 1691825 -280501839 + AluSq SINE Alu 3 231 -82 31 44 0 0 chr1 1691966 1692011 -280501653 + AT_rich Low_complexity Low_complexity 1 45 0 2387 61 0 3 chr1 1692025 1692319 -280501345 - AluY SINE Alu -16 295 3 1763 123 0 73 chr1 1693409 1693723 -280499941 - AluJb SINE Alu 0 430 146 2114 102 0 39 chr1 1693723 1693858 -280499806 + AluSq SINE Alu 2 141 -172 2426 65 3 0 chr1 1693858 1694164 -280499500 + AluY SINE Alu 1 307 -4 2114 102 0 39 chr1 1694164 1694333 -280499331 + AluSq SINE Alu 141 294 -19 1763 123 0 73 chr1 1694333 1694466 -280499198 - AluJb SINE Alu -284 146 5 1541 192 20 3 chr1 1696658 1696950 -280496714 - AluJb SINE Alu -15 297 1 2315 95 3 0 chr1 1696958 1697262 -280496402 - AluSp SINE Alu -8 305 1 1914 124 6 43 chr1 1697328 1697471 -280496193 + AluSg SINE Alu 1 148 -162 2388 84 0 0 chr1 1697471 1697779 -280495885 + AluY SINE Alu 1 308 -3 1914 124 6 43 chr1 1697779 1697957 -280495707 + AluSg SINE Alu 148 310 0 2272 95 0 0 chr1 1697972 1698266 -280495398 + AluSg SINE Alu 1 294 -16 844 121 0 35 chr1 1701478 1701641 -280492023 + FLAM_C SINE Alu 8 143 0 772 254 114 7 chr1 1701810 1702193 -280491471 + L1MC4 LINE L1 6478 6936 -1106 200 163 0 112 chr1 1703165 1703263 -280490401 + C-rich Low_complexity Low_complexity 1 87 0 193 104 0 42 chr1 1703617 1703665 -280489999 + (CGG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 1704387 1704410 -280489254 + AT_rich Low_complexity Low_complexity 1 23 0 2251 71 3 26 chr1 1704417 1704726 -280488938 + AluY SINE Alu 1 302 -9 1948 121 0 20 chr1 1705103 1705400 -280488264 - AluSx SINE Alu -21 291 1 2503 55 0 7 chr1 1705572 1705880 -280487784 + AluY SINE Alu 1 306 -5 2404 95 0 0 chr1 1705991 1706299 -280487365 - AluSq SINE Alu -9 304 1 2288 90 0 3 chr1 1706447 1706747 -280486917 + AluY SINE Alu 1 299 -12 1315 142 5 5 chr1 1706918 1707115 -280486549 + AluSp SINE Alu 1 197 -116 353 43 0 0 chr1 1707115 1707162 -280486502 + AluSp SINE Alu 87 133 -170 1546 176 17 7 chr1 1707167 1707462 -280486202 + AluSp SINE Alu 3 300 -13 325 296 102 0 chr1 1707773 1707881 -280485783 + MIR SINE MIR 112 230 -32 1641 159 69 28 chr1 1708121 1708410 -280485254 - AluJb SINE Alu 0 312 12 2396 89 0 0 chr1 1708496 1708789 -280484875 - AluSg SINE Alu -17 293 1 264 371 108 36 chr1 1708943 1708979 -280484685 - L2 LINE L2 -4 3268 3236 1841 116 81 11 chr1 1708979 1709263 -280484401 - AluSg SINE Alu -6 304 1 264 371 108 36 chr1 1709263 1709533 -280484131 - L2 LINE L2 -36 3236 2940 218 320 120 0 chr1 1709554 1709629 -280484035 + L2 LINE L2 3187 3270 -2 1890 125 72 0 chr1 1709730 1710009 -280483655 + AluSx SINE Alu 1 299 -13 184 372 33 0 chr1 1710351 1710472 -280483192 + L2 LINE L2 2932 3056 -257 198 203 275 0 chr1 1710539 1710608 -280483056 + L2 LINE L2 3199 3286 -27 491 149 20 155 chr1 1710734 1710834 -280482830 + Charlie1a DNA MER1_type 1 76 -2685 2171 50 54 4 chr1 1710834 1711111 -280482553 - AluY SINE Alu -20 291 1 491 149 20 155 chr1 1711111 1711158 -280482506 + Charlie1a DNA MER1_type 76 128 -1327 1898 171 0 10 chr1 1711197 1711507 -280482157 + AluJb SINE Alu 1 307 -5 1291 221 81 23 chr1 1711515 1711699 -280481965 + Charlie1a DNA MER1_type 1040 1212 -1549 2506 75 3 0 chr1 1711699 1712005 -280481659 - AluY SINE Alu -4 307 1 1291 221 81 23 chr1 1712005 1712213 -280481451 + Charlie1a DNA MER1_type 1212 1455 0 298 307 0 0 chr1 1712904 1712992 -280480672 - L2 LINE L2 -285 3028 2941 355 300 100 12 chr1 1713208 1713368 -280480296 - MIR SINE MIR -5 257 84 350 274 46 57 chr1 1713741 1713792 -280479872 - L1ME4a LINE L1 0 6121 6071 895 130 0 36 chr1 1713792 1713930 -280479734 + AluJo SINE Alu 1 133 -169 350 274 46 57 chr1 1713930 1714053 -280479611 - L1ME4a LINE L1 -50 6071 5949 2401 90 7 0 chr1 1714112 1714411 -280479253 - AluSx SINE Alu -11 301 1 327 236 285 8 chr1 1714545 1714668 -280478996 + MIR SINE MIR 58 214 -48 492 208 178 10 chr1 1714765 1714866 -280478798 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 1714910 1714937 -280478727 + (TC)n Simple_repeat Simple_repeat 1 27 0 792 165 16 0 chr1 1714977 1715098 -280478566 + AluJo SINE Alu 134 256 -56 1140 205 161 27 chr1 1715201 1715605 -280478059 - MLT1C LTR MaLR -2 465 8 962 195 12 0 chr1 1715757 1715921 -280477743 + FRAM SINE Alu 1 166 0 1986 167 0 3 chr1 1715937 1716249 -280477415 + AluSx SINE Alu 1 311 -1 2059 132 84 0 chr1 1716260 1716571 -280477093 + MER1B DNA MER1_type 1 337 0 2018 123 3 48 chr1 1716616 1716797 -280476867 - AluSg SINE Alu -8 302 139 2110 116 7 13 chr1 1716797 1717107 -280476557 - AluSx SINE Alu -4 308 1 2018 123 3 48 chr1 1717107 1717241 -280476423 - AluSg SINE Alu -171 139 1 1034 112 7 20 chr1 1717605 1717757 -280475907 - AluSg/x SINE Alu -23 289 140 282 159 0 0 chr1 1717757 1717801 -280475863 - Alu SINE Alu -256 44 1 438 307 116 24 chr1 1717842 1718223 -280475441 - MLT1H LTR MaLR -3 546 131 895 161 0 0 chr1 1718230 1718373 -280475291 + FLAM_C SINE Alu 1 143 0 264 268 0 0 chr1 1718547 1718603 -280475061 - L2 LINE L2 -9 3263 3208 277 478 25 76 chr1 1719152 1719466 -280474198 + AluSq SINE Alu 1 298 -5 2408 72 0 3 chr1 1719537 1719829 -280473835 - AluY SINE Alu -20 291 1 1833 114 23 75 chr1 1720709 1720896 -280472768 - AluSx SINE Alu -9 303 137 2544 77 0 0 chr1 1720896 1721207 -280472457 - AluY SINE Alu 0 311 1 1833 114 23 75 chr1 1721207 1721325 -280472339 - AluSx SINE Alu -175 137 14 1721 171 0 23 chr1 1721594 1721893 -280471771 + AluJo SINE Alu 1 292 -20 230 226 418 0 chr1 1722026 1722172 -280471492 + MER20 DNA MER1_type 6 212 -7 1457 163 42 54 chr1 1722320 1722651 -280471013 - L1MB5 LINE L1 -10 6164 5838 2370 86 0 16 chr1 1722667 1722971 -280470693 - AluY SINE Alu -11 300 2 972 81 89 0 chr1 1722971 1723095 -280470569 - AluSq/x SINE Alu -178 135 1 1277 173 28 4 chr1 1723095 1723344 -280470320 - L1MB5 LINE L1 -356 5824 5570 1958 118 36 4 chr1 1723641 1723920 -280469744 + AluSx SINE Alu 1 288 -24 2105 135 0 3 chr1 1723931 1724234 -280469430 + AluSc SINE Alu 1 302 -7 207 69 0 0 chr1 1724561 1724590 -280469074 + (TG)n Simple_repeat Simple_repeat 2 30 0 2088 123 0 3 chr1 1724590 1724874 -280468790 - AluSg SINE Alu -27 283 1 1304 141 0 5 chr1 1724874 1725066 -280468598 - AluSx SINE Alu -11 301 111 757 110 0 0 chr1 1725146 1725246 -280468418 - AluSx SINE Alu -210 102 3 2006 137 0 23 chr1 1725257 1725556 -280468108 - AluSx SINE Alu -20 292 1 629 252 0 0 chr1 1726022 1726145 -280467519 - FLAM_A SINE Alu -9 124 2 2509 84 0 0 chr1 1726377 1726685 -280466979 + AluY SINE Alu 1 308 -3 347 144 48 24 chr1 1726761 1726858 -280466806 + L1MC4 LINE L1 7885 8042 0 2382 97 0 0 chr1 1726902 1727200 -280466464 - AluSx SINE Alu -14 298 1 327 236 285 8 chr1 1727334 1727457 -280466207 + MIR SINE MIR 58 214 -48 492 208 178 10 chr1 1727554 1727655 -280466009 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 1727699 1727726 -280465938 + (TC)n Simple_repeat Simple_repeat 1 27 0 792 165 16 0 chr1 1727766 1727887 -280465777 + FRAM SINE Alu 1 120 -56 1140 205 161 27 chr1 1727990 1728394 -280465270 - MLT1C LTR MaLR -2 465 8 962 195 12 0 chr1 1728546 1728710 -280464954 + FRAM SINE Alu 1 166 0 1986 167 0 3 chr1 1728726 1729038 -280464626 + AluSx SINE Alu 1 311 -1 2059 132 84 0 chr1 1729049 1729360 -280464304 + MER1B DNA MER1_type 1 337 0 2018 123 3 48 chr1 1729405 1729586 -280464078 - AluSg SINE Alu -8 302 139 2110 116 7 13 chr1 1729586 1729896 -280463768 - AluSx SINE Alu -4 308 1 2018 123 3 48 chr1 1729896 1730030 -280463634 - AluSg SINE Alu -171 139 1 1034 112 7 20 chr1 1730394 1730546 -280463118 - AluSg/x SINE Alu -23 289 140 282 159 0 0 chr1 1730546 1730590 -280463074 - Alu SINE Alu -256 44 1 438 307 116 24 chr1 1730631 1731012 -280462652 - MLT1H LTR MaLR -3 546 131 895 161 0 0 chr1 1731019 1731162 -280462502 + FLAM_C SINE Alu 1 143 0 264 268 0 0 chr1 1731336 1731392 -280462272 - L2 LINE L2 -9 3263 3208 424 318 132 38 chr1 1731851 1731941 -280461723 - L2 LINE L2 -529 2785 2705 1604 181 85 0 chr1 1731941 1732222 -280461442 + AluJo SINE Alu 1 305 -7 424 318 132 38 chr1 1732222 1732502 -280461162 - L2 LINE L2 -609 2705 2380 1929 134 0 28 chr1 1732766 1733049 -280460615 - AluSx SINE Alu -37 275 1 328 280 103 37 chr1 1733058 1733262 -280460402 - L2 LINE L2 -1390 1924 1704 1918 112 40 11 chr1 1733262 1733539 -280460125 - AluSx SINE Alu 0 312 28 1321 166 86 43 chr1 1733764 1734042 -280459622 + AluJo SINE Alu 22 311 -1 2219 121 7 0 chr1 1734058 1734355 -280459309 + AluSx SINE Alu 1 299 -13 2351 86 3 13 chr1 1735004 1735317 -280458347 - AluY SINE Alu -1 310 1 2322 93 7 7 chr1 1735418 1735719 -280457945 - AluSg1 SINE Alu -8 301 1 2127 117 23 3 chr1 1735750 1736049 -280457615 + AluSq SINE Alu 1 305 -8 601 150 97 9 chr1 1736759 1736872 -280456792 + L2 LINE L2 3188 3310 -3 1180 60 142 87 chr1 1736878 1736949 -280456715 - MER30 DNA MER1_type 0 230 164 2201 98 21 0 chr1 1736949 1737235 -280456429 - AluSq SINE Alu -21 292 1 1180 60 142 87 chr1 1737235 1737246 -280456418 - MER30 DNA MER1_type -66 164 155 2445 76 0 0 chr1 1737246 1737547 -280456117 - AluY SINE Alu -10 301 1 1180 60 142 87 chr1 1737547 1737681 -280455983 - MER30 DNA MER1_type -75 155 1 296 287 74 0 chr1 1737685 1737807 -280455857 + L1MC/D LINE L1 5736 5866 -1942 2098 117 23 7 chr1 1737980 1738280 -280455384 + AluSq SINE Alu 1 305 -8 2197 97 0 0 chr1 1738626 1738904 -280454760 - AluY SINE Alu -22 289 12 2442 84 0 0 chr1 1738931 1739239 -280454425 - AluY SINE Alu -3 308 1 2229 93 26 10 chr1 1739874 1740176 -280453488 - AluSg1 SINE Alu -1 308 2 550 176 213 0 chr1 1740193 1740301 -280453363 - FLAM_C SINE Alu -2 131 1 1734 165 30 3 chr1 1741459 1741756 -280451908 + AluJb SINE Alu 1 305 -7 1349 156 45 102 chr1 1741985 1742299 -280451365 - AluJo SINE Alu -16 296 1 482 190 86 0 chr1 1742309 1742425 -280451239 - L1MC4 LINE L1 -480 7562 7437 207 0 0 0 chr1 1742737 1742760 -280450904 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1185 215 70 37 chr1 1742773 1743043 -280450621 - AluJo SINE Alu -33 279 1 2019 104 0 4 chr1 1743089 1743358 -280450306 - AluSx SINE Alu -10 302 35 266 98 0 44 chr1 1743494 1743546 -280450118 - Alu SINE Alu -9 291 249 1336 98 0 0 chr1 1743562 1743736 -280449928 - AluY SINE Alu -11 300 127 2222 142 6 0 chr1 1743774 1744127 -280449537 - L1PA16 LINE L1 -6 6160 5806 1285 47 0 35 chr1 1744152 1744322 -280449342 - L1PA5 LINE L1 -4 6150 5987 988 58 0 50 chr1 1744352 1744491 -280449173 - AluY SINE Alu -179 132 1 261 270 0 16 chr1 1744493 1744557 -280449107 + C-rich Low_complexity Low_complexity 1 62 0 325 129 0 47 chr1 1744716 1744816 -280448848 - AluJo SINE Alu -167 135 1 * 1243 224 101 48 chr1 1744816 1744900 -280448764 - MER119 DNA MER1_type -95 488 410 2184 130 3 0 chr1 1744900 1745201 -280448463 + AluSx SINE Alu 5 306 -6 1243 224 101 48 chr1 1745201 1745551 -280448113 - MER119 DNA MER1_type -173 410 31 1090 140 0 121 chr1 1746283 1746548 -280447116 + Tigger7 DNA MER2_type 2258 2490 -1 2308 101 0 0 chr1 1747494 1747792 -280445872 + AluSc SINE Alu 1 298 -11 854 118 0 52 chr1 1747794 1747929 -280445735 + FLAM_C SINE Alu 3 130 -3 1399 194 15 23 chr1 1747935 1748198 -280445466 + AluJo SINE Alu 38 298 -14 211 233 256 0 chr1 1748199 1748289 -280445375 - L2 LINE L2 -1 3271 3159 2480 43 7 16 chr1 1748496 1748800 -280444864 - AluY SINE Alu -10 301 1 2036 139 13 7 chr1 1748870 1749047 -280444617 - AluSx SINE Alu -2 310 129 2300 96 0 0 chr1 1749047 1749339 -280444325 - AluSg SINE Alu -16 294 3 2036 139 13 7 chr1 1749339 1749463 -280444201 - AluSx SINE Alu -183 129 7 682 180 0 43 chr1 1749463 1749594 -280444070 - FLAM_A SINE Alu -175 127 1 562 326 66 30 chr1 1749930 1750234 -280443430 + L2 LINE L2 2999 3313 0 292 332 104 26 chr1 1750849 1751117 -280442547 - L2 LINE L2 -481 2833 2545 1294 153 139 40 chr1 1751519 1751690 -280441974 - AluJo SINE Alu -11 301 92 2337 72 0 7 chr1 1751690 1751981 -280441683 + AluY SINE Alu 1 289 -22 1294 153 139 40 chr1 1751981 1752083 -280441581 - AluJo SINE Alu -220 92 1 2334 97 3 0 chr1 1752160 1752458 -280441206 - AluSp SINE Alu -14 299 1 31 0 0 0 chr1 1752625 1752656 -280441008 + AT_rich Low_complexity Low_complexity 1 31 0 1897 74 100 41 chr1 1752661 1752788 -280440876 - AluSg SINE Alu -25 285 167 2472 76 3 3 chr1 1752788 1753091 -280440573 - AluSp SINE Alu -9 304 2 1897 74 100 41 chr1 1753091 1753232 -280440432 - AluSg SINE Alu -143 167 1 483 248 177 50 chr1 1753298 1753781 -280439883 + L1MCc LINE L1 1169 1716 -4889 2386 77 0 7 chr1 1753787 1754087 -280439577 + AluSp SINE Alu 1 298 -15 1136 120 25 0 chr1 1754087 1754245 -280439419 + AluSg/x SINE Alu 134 295 -17 601 260 116 8 chr1 1754257 1754507 -280439157 + L1MCc LINE L1 1735 2011 -4930 1709 177 21 0 chr1 1754519 1754801 -280438863 + AluJb SINE Alu 1 288 -24 383 177 76 0 chr1 1754801 1754880 -280438784 + L1MCc LINE L1 2276 2360 -4581 625 287 105 53 chr1 1754927 1755338 -280438326 - MER21B LTR ERV1 -407 456 25 9005 132 62 13 chr1 1755417 1755827 -280437837 - Tigger2 DNA MER2_type -4 2714 2326 1949 119 58 3 chr1 1755827 1756122 -280437542 - AluSq SINE Alu -2 311 1 9005 132 62 13 chr1 1756122 1757360 -280436304 - Tigger2 DNA MER2_type -392 2326 984 1116 170 22 27 chr1 1757369 1757592 -280436072 + AluJo SINE Alu 10 227 -85 189 0 0 0 chr1 1757630 1757651 -280436013 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1942 127 0 0 chr1 1757651 1757935 -280435729 - AluSx SINE Alu -28 284 1 229 196 78 0 chr1 1757940 1757991 -280435673 - L1MC4 LINE L1 -891 7151 7097 501 116 0 0 chr1 1758092 1758161 -280435503 - AluS SINE Alu -223 89 21 1777 147 6 22 chr1 1758211 1758524 -280435140 + AluJb SINE Alu 3 310 -2 238 188 171 145 chr1 1760290 1760524 -280433140 + L1MC5 LINE L1 7277 7516 -445 2333 80 0 0 chr1 1761100 1761400 -280432264 - AluY SINE Alu -11 300 1 595 305 52 17 chr1 1761660 1761909 -280431755 + MIR SINE MIR 10 261 -1 1105 200 137 46 chr1 1762110 1762223 -280431441 - L1ME LINE L1 -476 5690 5589 1464 169 6 66 chr1 1762223 1762555 -280431109 + AluJo SINE Alu 1 312 0 1105 200 137 46 chr1 1762555 1762820 -280430844 - L1ME LINE L1 -577 5589 5349 1555 155 32 48 chr1 1762820 1762992 -280430672 - AluJb SINE Alu -8 304 138 1920 141 7 0 chr1 1762992 1763283 -280430381 - AluSx SINE Alu -19 293 1 1555 155 32 48 chr1 1763283 1763419 -280430245 - AluJb SINE Alu -174 138 1 1105 200 137 46 chr1 1763419 1763688 -280429976 - L1ME LINE L1 -817 5349 5106 2329 81 0 0 chr1 1763688 1763986 -280429678 - AluY SINE Alu -13 298 1 1904 117 13 23 chr1 1763986 1764293 -280429371 - AluSc SINE Alu -5 304 1 1105 200 137 46 chr1 1764293 1764350 -280429314 - L1ME LINE L1 -1059 5107 4923 2189 98 0 0 chr1 1764355 1764651 -280429013 + AluSx SINE Alu 3 298 -14 358 177 42 21 chr1 1764696 1764792 -280428872 - L1MC4 LINE L1 0 8042 7945 2360 84 0 0 chr1 1764868 1765176 -280428488 - AluY SINE Alu -3 308 1 601 236 0 16 chr1 1765408 1765531 -280428133 + FLAM_A SINE Alu 2 122 -11 1864 137 0 23 chr1 1765997 1766296 -280427368 + AluSx SINE Alu 1 292 -20 742 110 0 0 chr1 1766307 1766407 -280427257 + AluSx SINE Alu 3 102 -210 1207 141 0 5 chr1 1766487 1766679 -280426985 + AluSx SINE Alu 111 301 -11 1950 123 0 3 chr1 1766679 1766963 -280426701 + AluSg SINE Alu 1 283 -27 207 69 0 0 chr1 1766963 1766992 -280426672 + (CA)n Simple_repeat Simple_repeat 2 30 0 1959 129 0 3 chr1 1767328 1767622 -280426042 - AluSc SINE Alu -16 293 1 1821 118 36 4 chr1 1767633 1767912 -280425752 - AluSx SINE Alu -24 288 1 1343 141 48 20 chr1 1768209 1768458 -280425206 + L1MB5 LINE L1 5570 5825 -349 909 81 89 0 chr1 1768458 1768582 -280425082 + AluSq/x SINE Alu 1 135 -178 2226 86 0 16 chr1 1768582 1768886 -280424778 + AluY SINE Alu 2 300 -11 1551 163 42 54 chr1 1768902 1769233 -280424431 + L1MB5 LINE L1 5838 6164 -10 277 226 418 0 chr1 1769381 1769527 -280424137 - MER20 DNA MER1_type -7 212 6 1578 169 0 24 chr1 1769663 1769959 -280423705 - AluJo SINE Alu -23 289 1 1693 114 23 75 chr1 1770228 1770346 -280423318 + AluSx SINE Alu 14 137 -175 2390 77 0 0 chr1 1770346 1770657 -280423007 + AluY SINE Alu 1 311 0 1693 114 23 75 chr1 1770657 1770844 -280422820 + AluSx SINE Alu 137 303 -9 2373 52 0 0 chr1 1771724 1772048 -280421616 + AluY SINE Alu 1 324 0 1111 241 130 26 chr1 1772067 1772254 -280421410 + L1MC4 LINE L1 6430 6596 -1289 438 20 0 0 chr1 1772254 1772305 -280421359 + (CA)n Simple_repeat Simple_repeat 1 51 0 1111 241 130 26 chr1 1772305 1772714 -280420950 + L1MC4 LINE L1 6596 7151 -734 1948 123 0 0 chr1 1772717 1773001 -280420663 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr1 1773001 1773022 -280420642 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1048 170 22 27 chr1 1773060 1773283 -280420381 - AluJo SINE Alu -81 231 10 9557 131 62 13 chr1 1773292 1774530 -280419134 + Tigger2 DNA MER2_type 984 2326 -392 1809 119 58 3 chr1 1774530 1774825 -280418839 + AluSq SINE Alu 1 311 -2 9557 131 62 13 chr1 1774825 1775235 -280418429 + Tigger2 DNA MER2_type 2326 2714 -4 725 273 114 63 chr1 1775314 1775725 -280417939 + MER21B LTR ERV1 25 456 -407 398 177 76 0 chr1 1775772 1775851 -280417813 - L1MCc LINE L1 -4581 2360 2276 1569 177 21 0 chr1 1775851 1776133 -280417531 - AluJb SINE Alu -24 288 1 649 260 116 8 chr1 1776145 1776395 -280417269 - L1MCc LINE L1 -4930 2011 1735 1055 120 25 0 chr1 1776407 1776565 -280417099 - AluSg/x SINE Alu -17 293 132 2242 77 0 7 chr1 1776565 1776865 -280416799 - AluSp SINE Alu -15 298 1 539 242 175 48 chr1 1776871 1777354 -280416310 - L1MCc LINE L1 -4889 1534 1169 1171 57 0 0 chr1 1777420 1777561 -280416103 + AluSg1 SINE Alu 1 141 -168 1988 92 7 17 chr1 1777561 1777854 -280415810 + AluSp SINE Alu 2 291 -22 1016 148 0 0 chr1 1777968 1778123 -280415541 - FRAM SINE Alu -26 150 1 2032 120 0 3 chr1 1778135 1778427 -280415237 - AluSx SINE Alu -21 291 1 1166 170 74 48 chr1 1778457 1778727 -280414937 + AluJo SINE Alu 1 277 -35 2180 53 42 3 chr1 1778760 1779043 -280414621 + AluY SINE Alu 1 294 -17 2226 96 0 3 chr1 1779269 1779570 -280414094 + AluSq SINE Alu 1 300 -13 2045 123 7 0 chr1 1779953 1780255 -280413409 + AluSq SINE Alu 1 304 -9 309 51 0 0 chr1 1780394 1780433 -280413231 + (TG)n Simple_repeat Simple_repeat 2 40 0 550 208 57 0 chr1 1780435 1780541 -280413123 - FLAM_C SINE Alu -30 113 2 2149 102 0 0 chr1 1780976 1781269 -280412395 - AluSp SINE Alu -20 293 1 2166 120 0 0 chr1 1782873 1783173 -280410491 - AluSx SINE Alu -12 300 1 22 35 0 0 chr1 1783310 1783339 -280410325 + AT_rich Low_complexity Low_complexity 1 29 0 2249 71 0 3 chr1 1783424 1783721 -280409943 - AluY SINE Alu -11 300 5 1825 132 14 7 chr1 1784433 1784729 -280408935 + AluSx SINE Alu 1 298 -14 624 100 100 20 chr1 1784857 1784957 -280408707 - AluSg/x SINE Alu -22 288 181 823 178 92 12 chr1 1785289 1785452 -280408212 + AluJb SINE Alu 136 311 -1 2387 65 7 0 chr1 1786040 1786347 -280407317 - AluY SINE Alu -2 309 1 2090 59 3 56 chr1 1786686 1787010 -280406654 + AluY SINE Alu 1 307 -4 647 241 0 0 chr1 1787017 1787150 -280406514 + FLAM_C SINE Alu 1 133 0 308 159 55 131 chr1 1787150 1787187 -280406477 - Charlie5 DNA MER1_type -81 2543 2505 1312 162 170 4 chr1 1787187 1787446 -280406218 - AluJb SINE Alu 0 302 1 308 159 55 131 chr1 1787446 1787553 -280406111 - Charlie5 DNA MER1_type -119 2505 2410 2091 124 0 3 chr1 1788921 1789227 -280404437 - AluSx SINE Alu -7 305 1 1637 172 0 25 chr1 1789459 1789779 -280403885 + AluJb SINE Alu 1 312 0 2002 102 7 10 chr1 1789781 1790076 -280403588 + AluSx SINE Alu 1 294 -18 2318 93 0 0 chr1 1790409 1790721 -280402943 - AluSx SINE Alu 0 312 1 872 102 31 0 chr1 1790738 1790866 -280402798 - AluJo SINE Alu -176 136 5 216 0 0 0 chr1 1790972 1790996 -280402668 + (T)n Simple_repeat Simple_repeat 1 24 0 2372 226 46 20 chr1 1791789 1792373 -280401291 + L1MB5 LINE L1 5576 6174 0 2124 80 4 0 chr1 1792382 1792658 -280401006 + AluSx SINE Alu 28 304 -8 262 199 117 0 chr1 1793830 1793904 -280399760 + MIR SINE MIR 45 128 -80 2236 90 3 3 chr1 1794161 1794472 -280399192 - AluY SINE Alu 0 311 1 1555 173 20 10 chr1 1794475 1794776 -280398888 - AluJo SINE Alu 0 312 9 1084 210 110 3 chr1 1795188 1795479 -280398185 + L1MA7 LINE L1 5958 6279 -12 1457 193 0 27 chr1 1795512 1795808 -280397856 + AluJo SINE Alu 3 290 -22 25 31 0 0 chr1 1795853 1795885 -280397779 + AT_rich Low_complexity Low_complexity 1 32 0 1408 126 165 11 chr1 1795890 1796151 -280397513 + AluSx SINE Alu 1 301 -11 282 56 0 0 chr1 1796871 1796907 -280396757 + (TG)n Simple_repeat Simple_repeat 2 37 0 1171 75 43 0 chr1 1796948 1797109 -280396555 - L1PA6 LINE L1 -1 6153 5986 2381 56 0 13 chr1 1797214 1797517 -280396147 - AluY SINE Alu -12 299 1 2182 83 7 7 chr1 1797588 1797888 -280395776 - AluY SINE Alu -11 300 1 2115 121 0 7 chr1 1798392 1798697 -280394967 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr1 1798697 1798720 -280394944 + (TA)n Simple_repeat Simple_repeat 1 23 0 324 175 0 0 chr1 1798734 1798791 -280394873 + Alu SINE Alu 240 296 -4 2138 125 0 0 chr1 1798812 1799117 -280394547 + AluSx SINE Alu 1 305 -7 1680 142 0 86 chr1 1799221 1799415 -280394249 - AluJo SINE Alu -7 305 149 2068 76 40 0 chr1 1799415 1799691 -280393973 + AluY SINE Alu 1 287 -24 1680 142 0 86 chr1 1799691 1799821 -280393843 - AluJo SINE Alu -163 149 9 190 310 28 42 chr1 1800115 1800186 -280393478 + L3b LINE CR1 1479 1548 -35 1445 119 169 4 chr1 1800329 1800590 -280393074 + AluSx SINE Alu 1 304 -8 2033 112 0 0 chr1 1800841 1801151 -280392513 + AluSx SINE Alu 6 315 0 2018 105 14 7 chr1 1801474 1801769 -280391895 + AluSp SINE Alu 1 297 -16 2356 71 0 7 chr1 1801771 1802081 -280391583 + AluY SINE Alu 1 308 -3 1740 136 20 33 chr1 1802286 1802587 -280391077 - AluSg SINE Alu 0 310 14 2056 141 0 0 chr1 1802783 1803088 -280390576 - AluSx SINE Alu -7 305 1 2213 92 0 3 chr1 1803938 1804232 -280389432 + AluSq SINE Alu 1 293 -20 1984 110 3 10 chr1 1804303 1804603 -280389061 - AluSq SINE Alu -15 298 1 2156 101 0 7 chr1 1804605 1804902 -280388762 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 1805449 1805473 -280388191 + AT_rich Low_complexity Low_complexity 1 24 0 2246 64 0 20 chr1 1805473 1805768 -280387896 - AluY SINE Alu -22 289 1 2160 123 0 0 chr1 1805768 1806078 -280387586 - AluSg SINE Alu 0 310 1 1236 193 64 0 chr1 1806199 1806463 -280387201 + AluJo SINE Alu 2 282 -30 417 91 0 0 chr1 1806791 1806846 -280386818 - Alu SINE Alu -253 56 2 2156 101 0 7 chr1 1806849 1807146 -280386518 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 1807693 1807717 -280385947 + AT_rich Low_complexity Low_complexity 1 24 0 2265 67 0 20 chr1 1807714 1808012 -280385652 - AluY SINE Alu -19 292 1 2272 107 0 3 chr1 1808012 1808322 -280385342 - AluSc SINE Alu 0 309 1 1903 95 64 18 chr1 1808818 1809101 -280384563 + AluSx SINE Alu 1 296 -16 1002 201 14 14 chr1 1809320 1809539 -280384125 + MER47A DNA MER2_type 28 246 -120 191 318 103 40 chr1 1809693 1809819 -280383845 + MIR SINE MIR 13 146 -116 266 248 107 58 chr1 1810509 1810630 -280383034 + L1MC/D LINE L1 5683 5809 -1999 2029 119 7 0 chr1 1810776 1811071 -280382593 - AluSx SINE Alu -15 297 1 1266 143 10 0 chr1 1812046 1812249 -280381415 - AluSq SINE Alu -22 291 87 2387 44 7 3 chr1 1812258 1812554 -280381110 - AluY SINE Alu -14 297 1 1267 282 108 50 chr1 1812940 1814100 -280379564 + L1ME LINE L1 47 1269 -4811 584 302 71 88 chr1 1814117 1814368 -280379296 + L1ME LINE L1 1401 1655 -4425 2005 122 10 7 chr1 1814368 1814662 -280379002 - AluSx SINE Alu -17 295 1 584 302 71 88 chr1 1814662 1815209 -280378455 + L1ME LINE L1 1655 2186 -3894 1150 242 129 27 chr1 1815237 1815820 -280377844 + L1ME LINE L1 2253 2894 -3186 1541 103 23 0 chr1 1815820 1816034 -280377630 + AluSx SINE Alu 1 219 -93 411 200 61 17 chr1 1816247 1816362 -280377302 - L1ME LINE L1 -4700 1561 1442 1272 281 108 51 chr1 1816379 1817540 -280376124 - L1ME LINE L1 -4811 1269 47 2083 87 10 13 chr1 1817926 1818225 -280375439 + AluSx SINE Alu 1 298 -14 1266 143 10 0 chr1 1818234 1818437 -280375227 + AluSq SINE Alu 87 291 -22 2029 119 7 0 chr1 1819412 1819707 -280373957 + AluSx SINE Alu 1 297 -15 266 248 107 58 chr1 1819853 1819974 -280373690 - L1MC/D LINE L1 -1999 5809 5683 191 318 103 40 chr1 1820664 1820790 -280372874 - MIR SINE MIR -116 146 13 1002 201 14 14 chr1 1820944 1821163 -280372501 - MER47A DNA MER2_type -120 246 28 1903 95 64 18 chr1 1821382 1821665 -280371999 - AluSx SINE Alu -16 296 1 2196 92 3 0 chr1 1822161 1822445 -280371219 + AluSc SINE Alu 1 285 -24 767 92 64 0 chr1 1822822 1822931 -280370733 - AluSq SINE Alu -101 212 97 2056 122 7 0 chr1 1824071 1824365 -280369299 - AluSq SINE Alu -17 296 1 2064 121 0 7 chr1 1824427 1824733 -280368931 - AluSc SINE Alu -5 304 1 2474 50 0 10 chr1 1825674 1825976 -280367688 + AluSp SINE Alu 1 299 -14 2220 86 3 10 chr1 1827437 1827738 -280365926 - AluSp SINE Alu -14 299 1 2025 127 3 0 chr1 1829096 1829396 -280364268 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1831376 1831412 -280362252 + GA-rich Low_complexity Low_complexity 5 41 0 1186 98 11 6 chr1 1832409 1832583 -280361081 + AluY SINE Alu 122 296 -15 1160 124 0 0 chr1 1832620 1832789 -280360875 - AluSg/x SINE Alu -10 302 134 2261 79 7 7 chr1 1832789 1833093 -280360571 - AluSq SINE Alu -9 304 1 2122 82 14 0 chr1 1833108 1833401 -280360263 - AluY SINE Alu -14 297 1 23 0 0 0 chr1 1833879 1833902 -280359762 + AT_rich Low_complexity Low_complexity 1 23 0 389 219 42 0 chr1 1834995 1835091 -280358573 + MIR SINE MIR 60 159 -103 1998 103 11 4 chr1 1835098 1835379 -280358285 + AluSx SINE Alu 1 283 -29 201 292 14 0 chr1 1835445 1835517 -280358147 + L2 LINE L2 2892 2964 -349 213 240 135 21 chr1 1835583 1835679 -280357985 + L2 LINE L2 3167 3273 -40 259 209 121 0 chr1 1836108 1836199 -280357465 - MER69 DNA AcHobo -3 2523 2422 1297 181 59 28 chr1 1837354 1837456 -280356208 + AluJb SINE Alu 1 98 -214 225 0 0 0 chr1 1837456 1837481 -280356183 + (CA)n Simple_repeat Simple_repeat 2 26 0 1297 181 59 28 chr1 1837481 1837666 -280355998 + AluJb SINE Alu 98 297 -15 232 274 8 43 chr1 1838473 1838590 -280355074 + C-rich Low_complexity Low_complexity 6 118 0 233 217 28 38 chr1 1838705 1838811 -280354853 + (CGG)n Simple_repeat Simple_repeat 1 105 0 1469 204 0 4 chr1 1840068 1840343 -280353321 - AluJo SINE Alu -27 285 12 2302 78 3 0 chr1 1840352 1840647 -280353017 - AluSg SINE Alu -6 304 9 329 269 10 39 chr1 1841868 1841972 -280351692 - L1M LINE L1 -2443 5365 5265 2117 97 0 10 chr1 1842024 1842323 -280351341 - AluSg SINE Alu -14 296 1 307 119 25 4 chr1 1842459 1842528 -280351136 + Alu SINE Alu 1 53 -250 313 77 19 0 chr1 1842535 1842587 -280351077 + Alu SINE Alu 1 53 -249 2009 81 6 78 chr1 1842595 1842915 -280350749 + AluSp SINE Alu 1 297 -16 228 208 38 0 chr1 1842945 1842998 -280350666 + L1MC4 LINE L1 6649 6703 -1339 30 0 0 0 chr1 1843028 1843058 -280350606 + AT_rich Low_complexity Low_complexity 1 30 0 1438 204 48 0 chr1 1843114 1843383 -280350281 + AluJo SINE Alu 1 282 -30 486 0 0 0 chr1 1843418 1843472 -280350192 + (CA)n Simple_repeat Simple_repeat 1 54 0 811 153 0 0 chr1 1843556 1843680 -280349984 - FLAM_C SINE Alu -19 124 1 648 135 69 129 chr1 1843683 1843708 -280349956 - L1MD3 LINE L1 -7 7988 7963 2190 100 0 3 chr1 1843708 1844008 -280349656 + AluSq SINE Alu 1 299 -14 648 135 69 129 chr1 1844008 1844088 -280349576 - L1MD3 LINE L1 -32 7963 7880 2334 76 0 3 chr1 1844088 1844391 -280349273 - AluSp SINE Alu -11 302 1 648 135 69 129 chr1 1844391 1844570 -280349094 - L1MD3 LINE L1 -115 7880 6069 660 102 0 0 chr1 1844570 1844658 -280349006 - AluJ/FLAM SINE Alu -224 88 1 1694 191 3 3 chr1 1844685 1844988 -280348676 + AluJb SINE Alu 1 303 -9 2282 221 56 121 chr1 1845024 1845040 -280348624 - L1M4 LINE L1 -1078 5068 5053 1906 147 3 7 chr1 1845040 1845346 -280348318 + AluJb SINE Alu 1 305 -7 2282 221 56 121 chr1 1845346 1846092 -280347572 - L1M4 LINE L1 -1093 5053 4260 1842 128 38 7 chr1 1846092 1846382 -280347282 - AluSq SINE Alu -14 299 1 1690 84 0 0 chr1 1846390 1846629 -280347035 - AluY SINE Alu 0 308 70 2282 221 56 121 chr1 1846629 1846925 -280346739 - L1M4 LINE L1 -1893 4253 4068 1074 141 5 40 chr1 1846945 1847144 -280346520 - AluSg/x SINE Alu 0 310 119 315 0 0 0 chr1 1847144 1847179 -280346485 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1114 143 6 6 chr1 1847179 1847354 -280346310 - AluSx SINE Alu -137 175 1 2020 139 10 0 chr1 1847391 1847570 -280346094 - AluSx SINE Alu 0 312 127 2159 102 0 13 chr1 1847570 1847884 -280345780 - AluSx SINE Alu -2 310 1 2020 139 10 0 chr1 1847884 1848013 -280345651 - AluSx SINE Alu -185 127 1 500 296 31 6 chr1 1848060 1848222 -280345442 - MER5B DNA MER1_type -9 169 4 849 231 44 108 chr1 1848331 1848582 -280345082 - MLT1B LTR MaLR 0 626 361 1367 180 19 64 chr1 1848582 1848893 -280344771 - AluJo SINE Alu -15 297 1 849 231 44 108 chr1 1848893 1848954 -280344710 - MLT1B LTR MaLR -265 361 298 2236 93 7 0 chr1 1848954 1849254 -280344410 - AluSq SINE Alu -7 306 5 849 231 44 108 chr1 1849254 1849334 -280344330 - MLT1B LTR MaLR -328 298 20 851 167 0 0 chr1 1849336 1849468 -280344196 + FLAM_C SINE Alu 2 133 0 2110 111 0 7 chr1 1849932 1850229 -280343435 + AluSx SINE Alu 1 295 -17 1086 168 0 25 chr1 1850239 1850436 -280343228 + AluJo SINE Alu 1 192 -120 189 171 0 0 chr1 1850445 1850480 -280343184 + A-rich Low_complexity Low_complexity 1 35 0 1928 76 4 19 chr1 1850708 1850971 -280342693 - AluSp SINE Alu 0 313 55 821 154 56 7 chr1 1851019 1851162 -280342502 - AluJb SINE Alu -161 151 2 1925 116 25 18 chr1 1851234 1851519 -280342145 - AluSq SINE Alu -26 287 1 29 47 0 0 chr1 1851658 1851701 -280341963 + AT_rich Low_complexity Low_complexity 1 43 0 2173 90 3 0 chr1 1852240 1852529 -280341135 - AluSx SINE Alu -22 290 1 2365 90 0 0 chr1 1853502 1853812 -280339852 - AluSx SINE Alu -2 310 1 1042 60 8 8 chr1 1853812 1853946 -280339718 - AluY SINE Alu -177 134 1 321 26 0 0 chr1 1854351 1854389 -280339275 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1889 136 0 3 chr1 1854389 1854675 -280338989 - AluSq SINE Alu -28 285 1 1522 181 14 10 chr1 1855723 1855858 -280337806 + AluJb SINE Alu 1 134 -178 2106 105 0 3 chr1 1855858 1856153 -280337511 + AluSg1 SINE Alu 1 294 -15 1522 181 14 10 chr1 1856153 1856309 -280337355 + AluJb SINE Alu 134 293 -19 410 264 86 0 chr1 1860121 1860261 -280333403 - MSTD LTR MaLR 0 396 245 324 296 50 0 chr1 1860298 1860440 -280333224 - MSTC LTR MaLR -243 153 6 2304 75 3 3 chr1 1862030 1862325 -280331339 + AluSc SINE Alu 1 295 -14 252 0 0 0 chr1 1864212 1864240 -280329424 + (GGA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr1 1867478 1867526 -280326138 + (CA)n Simple_repeat Simple_repeat 2 50 0 218 132 19 0 chr1 1867564 1867617 -280326047 + (CA)n Simple_repeat Simple_repeat 1 54 0 358 314 128 16 chr1 1868565 1868753 -280324911 + L1ME LINE L1 5265 5473 -648 554 216 204 55 chr1 1868757 1869012 -280324652 + AluJo SINE Alu 5 297 -5 2229 84 0 7 chr1 1869060 1869356 -280324308 + AluY SINE Alu 1 294 -17 2126 105 0 10 chr1 1869356 1869651 -280324013 + AluSg SINE Alu 1 292 -18 2201 77 10 16 chr1 1869879 1870189 -280323475 - AluSg SINE Alu -2 308 1 26 0 0 0 chr1 1870424 1870450 -280323214 + GC_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 1870953 1870973 -280322691 + (A)n Simple_repeat Simple_repeat 1 20 0 200 136 0 68 chr1 1871704 1871763 -280321901 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 862 270 79 41 chr1 1872515 1872934 -280320730 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1872986 1873089 -280320575 + AluSp/q SINE Alu 193 295 -18 503 219 164 0 chr1 1873090 1873111 -280320553 - L1M4 LINE L1 -786 5360 5344 2261 92 13 0 chr1 1873111 1873417 -280320247 - AluSx SINE Alu -2 310 1 503 219 164 0 chr1 1873417 1873541 -280320123 - L1M4 LINE L1 -802 5344 5191 216 158 0 0 chr1 1873545 1873583 -280320081 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2134 110 3 0 chr1 1873583 1873874 -280319790 - AluSp SINE Alu -9 304 13 2172 122 0 0 chr1 1873883 1874177 -280319487 - AluSx SINE Alu -18 294 1 185 277 0 0 chr1 1874370 1874417 -280319247 + MIR SINE MIR 40 86 -176 1873 133 34 0 chr1 1874695 1874988 -280318676 - AluSx SINE Alu -9 303 1 2269 82 0 22 chr1 1875000 1875317 -280318347 - AluY SINE Alu -1 310 1 2001 118 17 0 chr1 1875594 1875882 -280317782 - AluSg SINE Alu -17 293 1 186 43 0 0 chr1 1875887 1875910 -280317754 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 288 272 22 11 chr1 1875934 1876026 -280317638 - L1MC4a LINE L1 -1280 6528 6436 1151 103 23 23 chr1 1876050 1876066 -280317598 + AluSg/x SINE Alu 121 136 -176 2033 118 10 3 chr1 1876066 1876371 -280317293 + AluSp SINE Alu 1 307 -6 1151 103 23 23 chr1 1876371 1876528 -280317136 + AluSg/x SINE Alu 135 294 -18 2193 85 0 3 chr1 1876528 1876823 -280316841 + AluY SINE Alu 1 294 -17 2247 103 0 0 chr1 1877043 1877345 -280316319 - AluSx SINE Alu -10 302 1 1254 149 0 0 chr1 1879646 1879841 -280313823 - AluJb SINE Alu 0 312 118 2069 121 6 6 chr1 1880317 1880630 -280313034 - AluSq SINE Alu 0 313 1 2327 79 0 3 chr1 1880630 1880933 -280312731 - AluY SINE Alu -9 302 1 2123 113 0 0 chr1 1880934 1881225 -280312439 - AluSg SINE Alu -19 291 1 868 157 0 7 chr1 1881378 1881525 -280312139 - AluJo SINE Alu -166 146 1 304 323 8 40 chr1 1881634 1881758 -280311906 + L1ME LINE L1 6 125 -5945 1324 136 5 0 chr1 1881806 1882004 -280311660 - AluSq SINE Alu -35 278 80 301 125 54 11 chr1 1882012 1882102 -280311562 - L1P5 LINE L1 -710 5441 5346 2129 125 3 0 chr1 1882634 1882945 -280310719 + AluSq SINE Alu 1 312 -1 494 312 24 0 chr1 1883081 1883251 -280310413 + MER3 DNA MER1_type 22 195 -14 2397 64 0 10 chr1 1883339 1883651 -280310013 - AluY SINE Alu -2 309 1 2143 101 0 3 chr1 1883657 1883953 -280309711 - AluSx SINE Alu -17 295 1 1613 147 8 4 chr1 1883993 1884258 -280309406 + AluSx SINE Alu 42 307 -5 1631 159 3 75 chr1 1884892 1885212 -280308452 - AluSx SINE Alu -15 297 1 2244 96 3 0 chr1 1885215 1885518 -280308146 - AluSx SINE Alu 0 312 9 2080 120 0 13 chr1 1885745 1886053 -280307611 - AluY SINE Alu -7 304 1 234 119 24 0 chr1 1886053 1886095 -280307569 - Alu SINE Alu -257 44 2 * 300 127 16 16 chr1 1886095 1886140 -280307524 - AluJ/FLAM SINE Alu -257 45 1 229 183 33 0 chr1 1886154 1886214 -280307450 - AluJ/FLAM SINE Alu -240 62 1 1483 170 50 14 chr1 1887045 1887327 -280306337 - AluJo SINE Alu -17 295 4 2072 125 0 0 chr1 1887470 1887759 -280305905 + AluSg SINE Alu 1 289 -21 311 284 50 14 chr1 1889869 1890010 -280303654 - MER65B LTR ERV1 -385 146 1 2007 132 10 0 chr1 1890035 1890330 -280303334 + AluSx SINE Alu 1 298 -14 1894 133 0 7 chr1 1890330 1890616 -280303048 + AluY SINE Alu 6 289 -22 1764 84 54 64 chr1 1890617 1890915 -280302749 + AluY SINE Alu 1 295 -16 2278 67 0 26 chr1 1890916 1891228 -280302436 + AluY SINE Alu 1 304 -7 2134 74 0 65 chr1 1891285 1891610 -280302054 + AluY SINE Alu 1 304 -7 2133 117 10 0 chr1 1891990 1892299 -280301365 + AluSx SINE Alu 1 312 0 357 332 109 10 chr1 1893273 1893475 -280300189 - MIR SINE MIR -21 241 20 658 164 94 0 chr1 1893478 1893606 -280300058 - FAM SINE Alu -45 140 1 1736 98 55 4 chr1 1893630 1893884 -280299780 - AluSg SINE Alu 0 310 44 1677 171 7 20 chr1 1893894 1894198 -280299466 - AluJb SINE Alu -11 301 2 519 147 198 0 chr1 1894907 1895023 -280298641 + Tigger1 DNA MER2_type 1 139 -2279 286 70 0 0 chr1 1895027 1895070 -280298594 - AluY SINE Alu -5 303 261 1516 110 0 5 chr1 1895071 1895280 -280298384 - AluY SINE Alu -103 208 1 213 309 12 48 chr1 1895434 1895518 -280298146 - L2 LINE L2 -2760 554 474 1218 131 159 36 chr1 1895938 1896190 -280297474 - AluY SINE Alu -17 294 12 1219 168 0 0 chr1 1896256 1896452 -280297212 + AluSg/x SINE Alu 100 295 -17 2141 102 0 17 chr1 1896454 1896748 -280296916 + AluSg SINE Alu 3 291 -19 2149 76 0 17 chr1 1896752 1897080 -280296584 + AluY SINE Alu 1 323 0 2287 80 3 3 chr1 1897234 1897535 -280296129 + AluY SINE Alu 1 301 -10 2396 60 0 7 chr1 1898213 1898513 -280295151 + AluY SINE Alu 1 298 -13 905 126 0 15 chr1 1900093 1900228 -280293436 + AluJo SINE Alu 1 133 -169 2459 70 0 3 chr1 1900304 1900617 -280293047 - AluSx SINE Alu 0 312 1 856 194 26 0 chr1 1901060 1901215 -280292449 + AluJo SINE Alu 137 295 -7 317 181 169 0 chr1 1901875 1901958 -280291706 + FLAM_A SINE Alu 33 129 -4 296 261 70 14 chr1 1902648 1902790 -280290874 + L1M4b LINE L1 779 928 -5356 * 1434 281 108 9 chr1 1902787 1903513 -280290151 + L1M4b LINE L1 1140 2035 -4347 302 286 181 4 chr1 1903593 1903852 -280289812 + L1M4b LINE L1 2173 2515 -3905 344 285 47 17 chr1 1903924 1903942 -280289722 + L1M4b LINE L1 2603 2619 -3763 1578 137 0 0 chr1 1903942 1904176 -280289488 + AluSg/x SINE Alu 78 311 -1 344 285 47 17 chr1 1904176 1904329 -280289335 + L1M4b LINE L1 2619 2779 -3603 2152 92 0 13 chr1 1904333 1904647 -280289017 + AluSg SINE Alu 1 310 0 2012 117 0 10 chr1 1905002 1905302 -280288362 - AluY SINE Alu -14 297 1 1065 189 4 25 chr1 1905302 1905546 -280288118 - L1M4c LINE L1 -4542 1842 1604 1409 152 28 24 chr1 1905547 1905797 -280287867 - AluJo SINE Alu -12 300 50 4167 199 130 29 chr1 1905798 1907246 -280286418 - L1M4c LINE L1 -4774 1610 17 448 141 10 10 chr1 1908216 1908315 -280285349 + GA-rich Low_complexity Low_complexity 2 100 0 2346 86 0 0 chr1 1908488 1908790 -280284874 - AluSx SINE Alu -10 302 1 1746 148 7 30 chr1 1910591 1910776 -280282888 - AluJo SINE Alu -21 291 114 2295 77 3 10 chr1 1910776 1911076 -280282588 + AluSg SINE Alu 1 298 -12 1746 148 7 30 chr1 1911076 1911188 -280282476 - AluJo SINE Alu -198 114 1 35 24 0 0 chr1 1916825 1916867 -280276797 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 1917029 1917063 -280276601 + GC_rich Low_complexity Low_complexity 1 34 0 376 224 24 8 chr1 1920101 1920226 -280273438 + (CA)n Simple_repeat Simple_repeat 2 128 0 236 127 18 0 chr1 1920266 1920321 -280273343 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 325 101 34 chr1 1920698 1920984 -280272680 + L1ME LINE L1 757 5407 -648 357 146 0 0 chr1 1920988 1921060 -280272604 + AluJ/FLAM SINE Alu 5 59 -243 547 172 82 16 chr1 1921121 1921243 -280272421 + FLAM_A SINE Alu 1 130 -3 2229 84 0 7 chr1 1921291 1921587 -280272077 + AluY SINE Alu 1 294 -17 2145 99 0 10 chr1 1921587 1921880 -280271784 + AluSg SINE Alu 1 290 -20 2278 87 6 13 chr1 1922113 1922424 -280271240 - AluSc SINE Alu 0 309 1 1015 166 6 6 chr1 1922441 1922604 -280271060 - FRAM SINE Alu 0 166 4 1875 114 0 28 chr1 1922832 1923145 -280270519 - AluSx SINE Alu 0 305 1 2151 80 3 17 chr1 1923153 1923455 -280270209 - AluSg SINE Alu -12 298 1 26 0 0 0 chr1 1923690 1923716 -280269948 + GC_rich Low_complexity Low_complexity 1 26 0 200 136 0 68 chr1 1924979 1925038 -280268626 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 851 272 79 41 chr1 1925790 1926209 -280267455 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1926261 1926364 -280267300 + AluSp/q SINE Alu 193 295 -18 2239 95 13 0 chr1 1926386 1926692 -280266972 - AluSx SINE Alu -2 310 1 280 232 50 144 chr1 1926694 1926840 -280266824 - L1M4 LINE L1 -822 5324 5166 2131 108 7 0 chr1 1926840 1927137 -280266527 - AluSp SINE Alu -2 311 13 2251 107 0 0 chr1 1927146 1927444 -280266220 - AluSx SINE Alu -14 298 1 280 232 50 144 chr1 1927444 1927627 -280266037 - L1M4 LINE L1 -988 5158 5017 257 337 232 6 chr1 1927637 1927818 -280265846 + MIR SINE MIR 40 261 -1 2022 118 7 3 chr1 1927962 1928259 -280265405 - AluY SINE Alu -13 298 1 280 269 57 80 chr1 1928462 1928533 -280265131 - L1MC4a LINE L1 -571 7237 7166 1920 132 17 0 chr1 1928533 1928821 -280264843 - AluSg SINE Alu -17 293 1 280 269 57 80 chr1 1928821 1928924 -280264740 - L1MC4a LINE L1 -642 7166 7067 1946 146 10 0 chr1 1929033 1929154 -280264510 + AluSx SINE Alu 9 127 -185 2191 102 0 13 chr1 1929154 1929468 -280264196 + AluSx SINE Alu 1 310 -2 1946 146 10 0 chr1 1929468 1929647 -280264017 + AluSx SINE Alu 127 312 0 1135 143 6 6 chr1 1929684 1929859 -280263805 + AluSx SINE Alu 1 175 -137 315 0 0 0 chr1 1929859 1929894 -280263770 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1088 141 5 40 chr1 1929894 1930093 -280263571 + AluSg/x SINE Alu 121 312 0 2077 230 56 112 chr1 1930113 1930409 -280263255 + L1M4 LINE L1 4068 4379 -1767 1708 84 0 0 chr1 1930409 1930648 -280263016 + AluY SINE Alu 70 308 0 1867 128 38 7 chr1 1930656 1930946 -280262718 + AluSq SINE Alu 1 299 -14 2077 230 56 112 chr1 1930946 1931692 -280261972 + L1M4 LINE L1 4386 5172 -974 1939 147 3 7 chr1 1931692 1931998 -280261666 - AluJb SINE Alu -7 305 1 2077 230 56 112 chr1 1931998 1932050 -280261614 + L1M4 LINE L1 5172 5107 -1039 1735 191 3 3 chr1 1932050 1932353 -280261311 - AluJb SINE Alu -9 303 1 2077 230 56 112 chr1 1932353 1932377 -280261287 + L1M4 LINE L1 5106 5130 -1016 666 102 0 0 chr1 1932380 1932468 -280261196 + AluJ/FLAM SINE Alu 1 88 -224 532 145 81 128 chr1 1932468 1932647 -280261017 + L1MD3 LINE L1 6069 6255 -1711 2356 76 0 3 chr1 1932647 1932950 -280260714 + AluSp SINE Alu 1 302 -11 532 145 81 128 chr1 1932950 1933030 -280260634 + L1MD3 LINE L1 6255 6337 -1629 2232 97 0 3 chr1 1933030 1933330 -280260334 - AluSq SINE Alu -14 299 1 532 145 81 128 chr1 1933330 1933366 -280260298 + L1MD3 LINE L1 6337 7959 -7 2089 121 0 7 chr1 1933392 1933698 -280259966 - AluSc SINE Alu -5 304 1 2491 50 0 10 chr1 1934639 1934941 -280258723 + AluSp SINE Alu 1 299 -14 2244 86 3 10 chr1 1936402 1936703 -280256961 - AluSp SINE Alu -14 299 1 2054 127 3 0 chr1 1938061 1938361 -280255303 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1940341 1940377 -280253287 + GA-rich Low_complexity Low_complexity 5 41 0 1100 105 12 6 chr1 1941374 1941536 -280252128 + AluY SINE Alu 122 284 -27 1283 156 4 39 chr1 2041548 2041779 -280151885 - AluSx SINE Alu -87 225 3 1925 50 0 114 chr1 2042399 2042698 -280150966 - AluY SINE Alu -46 265 1 195 42 0 0 chr1 2043346 2043370 -280150294 + (CGTG)n Simple_repeat Simple_repeat 4 27 0 1952 104 0 38 chr1 2043897 2044186 -280149478 - AluSx SINE Alu -34 278 1 2071 120 0 23 chr1 2044197 2044505 -280149159 - AluSg1 SINE Alu -8 301 1 2237 98 3 0 chr1 2046375 2046672 -280146992 + AluSg SINE Alu 1 298 -12 216 292 104 42 chr1 2046792 2046888 -280146776 + MIR SINE MIR 156 257 -5 647 221 8 0 chr1 2046920 2047051 -280146613 - FLAM_C SINE Alu 0 133 2 945 201 183 0 chr1 2047330 2047559 -280146105 + AluJo SINE Alu 18 288 -24 1522 176 19 4 chr1 2047605 2047733 -280145931 + AluSq SINE Alu 1 126 -187 1917 128 17 3 chr1 2047733 2048030 -280145634 + AluSp SINE Alu 2 302 -11 1522 176 19 4 chr1 2048030 2048163 -280145501 + AluSq SINE Alu 126 266 -47 352 272 24 16 chr1 2048292 2048417 -280145247 - L1MB8 LINE L1 -12 6166 6041 690 238 18 24 chr1 2049368 2049536 -280144128 - AluJb SINE Alu -9 303 137 2011 103 34 0 chr1 2049536 2049828 -280143836 - AluSx SINE Alu -10 302 1 1886 142 0 14 chr1 2049950 2050245 -280143419 - AluSx SINE Alu -21 291 1 2155 106 0 0 chr1 2050313 2050626 -280143038 - AluSx SINE Alu 0 313 1 1930 89 0 124 chr1 2051201 2051401 -280142263 - AluSq SINE Alu -7 296 153 1569 88 0 5 chr1 2051401 2051606 -280142058 - AluY SINE Alu -107 204 1 1930 89 0 124 chr1 2051606 2051743 -280141921 - AluSq SINE Alu -150 153 1 1461 198 21 3 chr1 2051753 2052041 -280141623 - AluJo SINE Alu -19 293 1 2243 70 0 54 chr1 2053948 2054263 -280139401 - AluY SINE Alu -13 298 1 681 130 10 0 chr1 2054263 2054363 -280139301 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 2054410 2054439 -280139225 + AT_rich Low_complexity Low_complexity 1 29 0 2137 110 7 0 chr1 2054717 2055018 -280138646 - AluSx SINE Alu -9 303 1 1203 151 39 131 chr1 2057565 2057765 -280135899 - AluYb8 SINE Alu -12 306 148 2283 87 3 3 chr1 2057765 2058064 -280135600 - AluY SINE Alu -12 299 1 1203 151 39 131 chr1 2058064 2058200 -280135464 - AluYb8 SINE Alu -170 148 1 2299 84 7 0 chr1 2058208 2058517 -280135147 - AluY SINE Alu 0 311 1 434 174 0 0 chr1 2058689 2058758 -280134906 - FLAM_A SINE Alu -56 76 8 2053 110 10 3 chr1 2059180 2059480 -280134184 - AluSg SINE Alu -8 302 1 1165 96 12 0 chr1 2060705 2060871 -280132793 - AluSq SINE Alu -9 304 137 2017 115 0 55 chr1 2060872 2061202 -280132462 - AluSx SINE Alu 0 312 1 266 136 0 0 chr1 2061202 2061246 -280132418 - Alu SINE Alu -264 44 1 1797 98 132 0 chr1 2061963 2062229 -280131435 - AluY SINE Alu 0 301 1 2327 80 3 0 chr1 2063121 2063421 -280130243 - AluSx SINE Alu -11 301 1 448 132 44 0 chr1 2066339 2066430 -280127234 + FRAM SINE Alu 30 124 -52 1981 128 10 14 chr1 2067188 2067348 -280126316 - AluSx SINE Alu -16 296 136 2491 50 0 3 chr1 2067348 2067650 -280126014 - AluY SINE Alu -10 301 1 1981 128 10 14 chr1 2067650 2067786 -280125878 - AluSx SINE Alu -176 136 1 1921 125 4 0 chr1 2067949 2068266 -280125398 - AluSx SINE Alu 0 326 9 2299 86 20 0 chr1 2068300 2068602 -280125062 - AluY SINE Alu -2 309 2 2205 92 3 3 chr1 2068603 2068907 -280124757 - AluSx SINE Alu -8 304 1 623 101 0 0 chr1 2068907 2069006 -280124658 - HERV17 LTR ERV1 -5187 1709 1611 * 1302 158 3 81 chr1 2068973 2069038 -280124626 - HERV17 LTR ERV1 -3313 4472 4404 2557 50 0 0 chr1 2069038 2069339 -280124325 + AluY SINE Alu 1 301 -10 1302 158 3 81 chr1 2069339 2069473 -280124191 - HERV17 LTR ERV1 -3381 4404 4303 1998 113 0 53 chr1 2069473 2069793 -280123871 - AluSx SINE Alu -9 303 1 1302 158 3 81 chr1 2069793 2069902 -280123762 - HERV17 LTR ERV1 -3482 4303 4187 1883 121 24 17 chr1 2069973 2070271 -280123393 - AluY SINE Alu -10 301 2 578 140 26 88 chr1 2070272 2070612 -280123052 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr1 2070599 2070933 -280122731 - HERV17 LTR ERV1 -4918 1731 1378 2329 58 17 0 chr1 2071248 2071542 -280122122 + AluY SINE Alu 2 300 -11 2160 82 21 7 chr1 2072245 2072536 -280121128 - AluY SINE Alu -16 295 1 2084 122 3 3 chr1 2072544 2072847 -280120817 - AluSx SINE Alu -9 303 1 205 175 0 0 chr1 2073046 2073086 -280120578 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 2074092 2074114 -280119550 + GC_rich Low_complexity Low_complexity 1 22 0 233 271 160 7 chr1 2074728 2074872 -280118792 + L2 LINE L2 2286 2451 -863 312 280 69 42 chr1 2076718 2076900 -280116764 + MIR SINE MIR 15 202 -60 2285 49 3 14 chr1 2077717 2078005 -280115659 - AluY SINE Alu -26 285 1 291 146 0 0 chr1 2078016 2078071 -280115593 + (TA)n Simple_repeat Simple_repeat 1 55 0 522 90 0 108 chr1 2078071 2078108 -280115556 + Harlequin LTR ERV1 1611 1650 -5246 2437 44 0 7 chr1 2078108 2078406 -280115258 - AluY SINE Alu -15 296 1 522 90 0 108 chr1 2078406 2078479 -280115185 + Harlequin LTR ERV1 1650 1709 -5187 2107 102 3 13 chr1 2078479 2078783 -280114881 + AluSx SINE Alu 1 301 -11 2277 91 3 3 chr1 2078783 2079092 -280114572 + AluSx SINE Alu 1 309 -3 1703 108 13 0 chr1 2079145 2079377 -280114287 + AluSg SINE Alu 1 235 -75 180 0 0 0 chr1 2079377 2079397 -280114267 + (A)n Simple_repeat Simple_repeat 1 20 0 2536 62 0 0 chr1 2079406 2079714 -280113950 + AluY SINE Alu 1 308 -3 968 118 51 0 chr1 2079716 2079893 -280113771 + LTR10A LTR ERV1 376 609 0 506 81 0 40 chr1 2079893 2079967 -280113697 + Alu SINE Alu 222 292 -19 905 78 0 8 chr1 2079969 2080097 -280113567 + FLAM_C SINE Alu 1 127 -16 1525 179 26 23 chr1 2080189 2080357 -280113307 - AluSx SINE Alu -3 309 138 2099 111 3 3 chr1 2080357 2080654 -280113010 - AluSq SINE Alu -14 299 3 1525 179 26 23 chr1 2080654 2080793 -280112871 - AluSx SINE Alu -174 138 1 1963 111 28 7 chr1 2080803 2081092 -280112572 - AluSg SINE Alu -15 295 1 1206 163 80 73 chr1 2081168 2081468 -280112196 + AluJo SINE Alu 1 302 -10 250 203 47 31 chr1 2084437 2084501 -280109163 + L1MC3 LINE L1 7496 7560 -225 252 219 16 16 chr1 2084564 2084628 -280109036 + L1MC3 LINE L1 7709 7772 -13 * 1498 230 72 0 chr1 2084627 2085045 -280108619 + L1 LINE L1 3508 3955 -2191 934 92 0 0 chr1 2085060 2085180 -280108484 + AluSq/x SINE Alu 1 120 -193 849 226 76 4 chr1 2085240 2085515 -280108149 + L1 LINE L1 3949 4243 -1903 1811 133 10 43 chr1 2085558 2085715 -280107949 - AluSx SINE Alu -20 292 148 2200 102 0 3 chr1 2085715 2086019 -280107645 - AluSg SINE Alu -7 303 1 1811 133 10 43 chr1 2086019 2086163 -280107501 - AluSx SINE Alu -164 148 1 1856 147 10 0 chr1 2086167 2086466 -280107198 - AluSx SINE Alu -4 308 7 1647 190 0 0 chr1 2086486 2086765 -280106899 - AluJb SINE Alu -25 287 9 269 196 18 0 chr1 2086863 2086919 -280106745 + MLT1I LTR MaLR 353 409 0 1952 132 10 0 chr1 2087134 2087423 -280106241 - AluSc SINE Alu -17 292 1 1286 121 15 5 chr1 2089615 2089813 -280103851 + AluSq SINE Alu 1 200 -113 22 35 0 0 chr1 2089813 2089842 -280103822 + AT_rich Low_complexity Low_complexity 1 29 0 965 183 106 84 chr1 2089853 2089908 -280103756 + AluJb SINE Alu 14 66 -246 2076 114 0 0 chr1 2089908 2090198 -280103466 - AluSg SINE Alu -20 290 1 965 183 106 84 chr1 2090198 2090415 -280103249 + AluJb SINE Alu 66 292 -20 1687 143 4 8 chr1 2090421 2090679 -280102985 + AluSq SINE Alu 1 257 -56 2269 75 7 0 chr1 2091172 2091467 -280102197 - AluY SINE Alu -13 298 2 835 116 16 16 chr1 2094063 2094192 -280099472 + AluSp SINE Alu 13 141 -172 1961 112 10 17 chr1 2094196 2094492 -280099172 + AluY SINE Alu 1 294 -17 1747 122 3 91 chr1 2094867 2095187 -280098477 - AluSx SINE Alu -20 292 1 1417 152 24 110 chr1 2095187 2095521 -280098143 - AluSp SINE Alu -7 306 1 819 115 23 8 chr1 2095535 2095665 -280097999 - AluY SINE Alu -179 132 1 1201 171 15 0 chr1 2095666 2095871 -280097793 - AluJb SINE Alu -20 292 85 2057 114 0 10 chr1 2097203 2097500 -280096164 + AluSg SINE Alu 1 294 -16 300 319 5 32 chr1 2098444 2098629 -280095035 + (TG)n Simple_repeat Simple_repeat 1 180 0 283 300 10 3 chr1 2098650 2098970 -280094694 + (TG)n Simple_repeat Simple_repeat 1 322 0 451 274 12 6 chr1 2099001 2099169 -280094495 + (TG)n Simple_repeat Simple_repeat 2 170 0 228 387 0 12 chr1 2099140 2099308 -280094356 + (CGTG)n Simple_repeat Simple_repeat 1 166 0 * 428 320 6 6 chr1 2099245 2099423 -280094241 + (TG)n Simple_repeat Simple_repeat 2 179 0 1834 144 17 0 chr1 2100380 2100671 -280092993 + AluSx SINE Alu 1 296 -16 2076 79 18 0 chr1 2100673 2100999 -280092665 + AluSp SINE Alu 1 331 0 935 167 61 5 chr1 2101453 2101651 -280092013 + AluSg/x SINE Alu 85 293 -17 1346 149 0 0 chr1 2101654 2101862 -280091802 + AluSg/x SINE Alu 85 292 -20 2173 86 7 0 chr1 2101869 2102161 -280091503 + AluY SINE Alu 1 294 -17 1925 130 3 7 chr1 2103876 2104176 -280089488 + AluSx SINE Alu 1 299 -13 2347 65 13 0 chr1 2104187 2104494 -280089170 + AluY SINE Alu 1 311 0 516 231 0 0 chr1 2104512 2104620 -280089044 + FLAM_A SINE Alu 20 127 -15 1844 148 0 0 chr1 2104883 2105173 -280088491 + AluSc SINE Alu 1 290 -19 1108 39 0 0 chr1 2105181 2105308 -280088356 + AluY SINE Alu 9 135 -176 1850 50 50 0 chr1 2105308 2105546 -280088118 + AluY SINE Alu 60 309 -2 1831 110 41 10 chr1 2105556 2105848 -280087816 + AluSg SINE Alu 3 303 -7 189 0 0 0 chr1 2106558 2106579 -280087085 + (CCCCG)n Simple_repeat Simple_repeat 2 22 0 25 35 0 52 chr1 2106692 2106750 -280086914 + GC_rich Low_complexity Low_complexity 1 55 0 2629 152 79 0 chr1 2107656 2108163 -280085501 + LTR10A LTR ERV1 1 547 -62 481 128 23 35 chr1 2108177 2108263 -280085401 + Alu SINE Alu 221 305 -5 1976 118 30 3 chr1 2108267 2108571 -280085093 + AluSx SINE Alu 1 312 0 856 93 0 16 chr1 2108581 2108710 -280084954 + FLAM_C SINE Alu 1 127 -16 853 171 12 24 chr1 2108791 2108955 -280084709 - AluSg/x SINE Alu -11 301 140 1842 128 23 20 chr1 2108955 2109259 -280084405 - AluSq SINE Alu -8 305 1 237 197 49 33 chr1 2111059 2111120 -280082544 + L1MC3 LINE L1 7496 7557 -228 262 219 31 16 chr1 2111186 2111250 -280082414 + L1MC3 LINE L1 7709 7773 -12 2858 219 49 46 chr1 2111251 2111974 -280081690 + L1 LINE L1 3510 4229 -1917 557 75 0 50 chr1 2111974 2112054 -280081610 + Alu SINE Alu 2 77 -234 2398 82 0 0 chr1 2111985 2112288 -280081376 + AluY SINE Alu 9 311 0 2858 219 49 46 chr1 2112054 2112497 -280081167 + L1 LINE L1 4229 4456 -1690 708 254 55 0 chr1 2112497 2112662 -280081002 + FRAM SINE Alu 1 167 -9 296 235 52 17 chr1 2112686 2112801 -280080863 + L1 LINE L1 4566 4684 -1462 1907 140 0 7 chr1 2112814 2113106 -280080558 - AluSx SINE Alu -15 297 8 8224 51 20 5 chr1 2113106 2114098 -280079566 + LTR13 LTR ERVK 1 1007 0 198 0 0 0 chr1 2114113 2114135 -280079529 + (CA)n Simple_repeat Simple_repeat 1 22 0 2286 88 3 3 chr1 2114389 2114696 -280078968 - AluSp SINE Alu -6 307 1 2029 135 6 3 chr1 2114778 2115082 -280078582 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr1 2115082 2115109 -280078555 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2341 73 3 3 chr1 2115818 2116121 -280077543 - AluY SINE Alu -8 303 1 579 131 0 0 chr1 2116153 2116252 -280077412 + Harlequin LTR ERV1 1611 1709 -5187 2120 115 3 3 chr1 2116252 2116556 -280077108 + AluSx SINE Alu 1 304 -8 2386 65 20 0 chr1 2116556 2116850 -280076814 + AluY SINE Alu 1 300 -11 1016 115 48 0 chr1 2116850 2117037 -280076627 + LTR10A LTR ERV1 366 609 0 484 95 0 40 chr1 2117037 2117111 -280076553 + Alu SINE Alu 221 291 -19 894 78 0 8 chr1 2117113 2117241 -280076423 + FLAM_C SINE Alu 1 127 -16 1544 175 26 23 chr1 2117333 2117501 -280076163 - AluSx SINE Alu -3 309 138 2130 104 3 3 chr1 2117501 2117798 -280075866 - AluSq SINE Alu -14 299 3 1544 175 26 23 chr1 2117798 2117937 -280075727 - AluSx SINE Alu -174 138 1 1949 119 27 7 chr1 2117946 2118240 -280075424 - AluSg SINE Alu -10 300 1 1206 163 80 73 chr1 2118316 2118616 -280075048 + AluJo SINE Alu 1 302 -10 674 197 16 8 chr1 2119829 2119956 -280073708 + FLAM_C SINE Alu 1 128 -5 1717 163 35 0 chr1 2119960 2120242 -280073422 + AluJb SINE Alu 2 293 -19 252 203 47 31 chr1 2122770 2122834 -280070830 + L1MC3 LINE L1 7496 7560 -225 292 169 31 15 chr1 2122896 2122961 -280070703 + L1MD3 LINE L1 7920 7985 -10 1427 202 40 64 chr1 2122962 2123418 -280070246 + L1 LINE L1 3510 3954 -2192 1262 161 5 0 chr1 2123545 2123750 -280069914 - AluSx SINE Alu -106 206 1 764 197 0 0 chr1 2123752 2123884 -280069780 - AluJo/FLAM SINE Alu -169 133 2 2059 125 0 3 chr1 2123892 2124189 -280069475 - AluSp SINE Alu -17 296 1 2475 65 0 7 chr1 2125182 2125492 -280068172 + AluY SINE Alu 1 308 -3 2455 64 0 6 chr1 2127561 2127872 -280065792 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 2127921 2128224 -280065440 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 2128226 2128529 -280065135 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 2128535 2128828 -280064836 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 2128828 2128969 -280064695 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 2128975 2129267 -280064397 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 2130318 2130629 -280063035 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 2131442 2131736 -280061928 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 2133731 2133787 -280059877 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 2133874 2134175 -280059489 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 2134183 2134473 -280059191 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 2134523 2134661 -280059003 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 2134703 2134738 -280058926 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 2134738 2134998 -280058666 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 2134998 2135132 -280058532 - L1M4 LINE L1 -1467 4679 4547 2138 102 0 10 chr1 2135132 2135437 -280058227 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 2135437 2135558 -280058106 - L1M4 LINE L1 -1599 4547 4428 2431 72 7 0 chr1 2135558 2135865 -280057799 + AluY SINE Alu 1 309 -2 2856 224 49 42 chr1 2135865 2136257 -280057407 - L1M4 LINE L1 -1718 4428 4040 1805 113 4 0 chr1 2136257 2136513 -280057151 + AluSp SINE Alu 49 305 -8 1968 92 58 20 chr1 2136514 2136806 -280056858 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 2136806 2137240 -280056424 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 2137241 2137306 -280056358 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 2137368 2137432 -280056232 - L1MC3 LINE L1 -225 7560 7496 1700 123 22 75 chr1 2139235 2139553 -280054111 + AluSq SINE Alu 1 301 -12 854 200 0 25 chr1 2139553 2139713 -280053951 + AluSg/x SINE Alu 138 293 -17 842 102 16 23 chr1 2139796 2139924 -280053740 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 2139926 2140017 -280053647 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 2140017 2140450 -280053214 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 2140450 2140661 -280053003 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 2140666 2140748 -280052916 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 2140767 2141107 -280052557 - LTR10A LTR ERV1 -62 547 119 1829 135 204 13 chr1 2141107 2141485 -280052179 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 2141485 2141624 -280052040 - LTR10A LTR ERV1 -490 119 1 25 35 0 52 chr1 2142175 2142233 -280051431 + GC_rich Low_complexity Low_complexity 1 55 0 189 68 68 0 chr1 2142346 2142390 -280051274 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 680 135 10 0 chr1 2142910 2143014 -280050650 - AluSq/x SINE Alu -207 105 1 1171 194 0 5 chr1 2144733 2144955 -280048709 - AluSg/x SINE Alu -7 305 85 1721 145 39 0 chr1 2144958 2145241 -280048423 - AluSx SINE Alu -18 294 1 2028 108 20 7 chr1 2146268 2146574 -280047090 - AluSq SINE Alu 0 313 4 1776 163 20 0 chr1 2146576 2146876 -280046788 - AluSx SINE Alu -6 306 1 318 339 6 27 chr1 2147786 2147969 -280045695 + (CACG)n Simple_repeat Simple_repeat 1 179 0 * 494 279 6 6 chr1 2147881 2148060 -280045604 + (CA)n Simple_repeat Simple_repeat 1 179 0 315 238 17 0 chr1 2148088 2148260 -280045404 + (CA)n Simple_repeat Simple_repeat 2 176 0 383 279 0 53 chr1 2148284 2148474 -280045190 + (CA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 2148531 2148555 -280045109 + (CA)n Simple_repeat Simple_repeat 2 25 0 2057 114 0 10 chr1 2149095 2149392 -280044272 - AluSg SINE Alu -16 294 1 1170 144 35 5 chr1 2150673 2150875 -280042789 + AluJb SINE Alu 85 292 -20 2148 76 7 26 chr1 2150887 2151191 -280042473 + AluY SINE Alu 12 309 -2 1827 118 3 88 chr1 2151564 2151893 -280041771 - AluSx SINE Alu -11 301 1 2058 138 0 3 chr1 2151900 2152205 -280041459 - AluSp SINE Alu -9 304 1 2416 67 0 0 chr1 2155278 2155578 -280038086 - AluY SINE Alu -11 300 1 1470 195 21 7 chr1 2155590 2155872 -280037792 - AluJb SINE Alu -26 286 1 1948 143 13 0 chr1 2155876 2156183 -280037481 - AluSx SINE Alu -1 311 1 2157 124 0 10 chr1 2157819 2158126 -280035538 - AluSq SINE Alu -8 305 2 270 196 18 0 chr1 2159974 2160030 -280033634 - MLT1I LTR MaLR 0 409 353 1568 191 20 10 chr1 2160117 2160411 -280033253 + AluJb SINE Alu 1 297 -15 2805 3 0 0 chr1 2160412 2160720 -280032944 + AluYa5 SINE Alu 1 308 -3 1646 164 3 24 chr1 2160737 2161029 -280032635 + AluSx SINE Alu 4 289 -23 2148 112 7 0 chr1 2161037 2161342 -280032322 + AluSc SINE Alu 1 307 -2 2334 80 0 16 chr1 2161356 2161670 -280031994 + AluY SINE Alu 1 309 -2 817 248 8 29 chr1 2363121 2363359 -279830305 + AluSq SINE Alu 4 236 -77 231 302 113 0 chr1 2366783 2366889 -279826775 + MER58C DNA MER1_type 77 194 -21 216 268 61 12 chr1 2369984 2370066 -279823598 - L2 LINE L2 -50 3222 3137 531 251 4 92 chr1 2373166 2373405 -279820259 - L1MA10 LINE L1 0 6334 6117 309 250 0 43 chr1 2376986 2377150 -279816514 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 211 274 32 0 chr1 2377669 2377731 -279815933 + MER5B DNA MER1_type 1 64 -114 392 331 162 0 chr1 2378729 2378883 -279814781 - MER5A DNA MER1_type -6 183 5 280 358 54 18 chr1 2385740 2385961 -279807703 + MIR SINE MIR 22 250 -12 1651 148 8 4 chr1 2386593 2386849 -279806815 + AluJo SINE Alu 3 259 -53 463 169 19 32 chr1 2386870 2387024 -279806640 + GA-rich Low_complexity Low_complexity 5 156 0 1589 144 95 3 chr1 2387033 2387318 -279806346 + AluJo SINE Alu 1 311 -1 231 88 0 0 chr1 2391050 2391084 -279802580 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 247 306 0 12 chr1 2394135 2394220 -279799444 + (CA)n Simple_repeat Simple_repeat 1 84 0 498 280 0 4 chr1 2396508 2396740 -279796924 + (TG)n Simple_repeat Simple_repeat 1 230 0 239 239 182 0 chr1 2398696 2398784 -279794880 - L2 LINE L2 -5 3267 3164 201 248 272 8 chr1 2400043 2400168 -279793496 - MER5A DNA MER1_type 0 189 32 255 289 100 0 chr1 2401446 2401536 -279792128 + MIR SINE MIR 94 192 -70 226 286 26 0 chr1 2402113 2402190 -279791474 + L2 LINE L2 2896 2974 -339 973 278 58 8 chr1 2405595 2405958 -279787706 + MLT1C LTR MaLR 11 391 -76 324 274 62 18 chr1 2406560 2406673 -279786991 - MIR3 SINE MIR -10 198 81 413 146 10 29 chr1 2408439 2408542 -279785122 + CT-rich Low_complexity Low_complexity 2 102 0 2502 56 0 0 chr1 2408810 2409115 -279784549 + AluY SINE Alu 1 305 -6 307 216 15 0 chr1 2412161 2412246 -279781418 + L1MB5 LINE L1 5688 5773 -393 433 283 114 4 chr1 2412429 2412666 -279780998 + L1MB5 LINE L1 5880 6142 -32 210 357 0 0 chr1 2416383 2416523 -279777141 + (TG)n Simple_repeat Simple_repeat 2 141 0 192 210 32 16 chr1 2416576 2416638 -279777026 + L2 LINE L2 2907 2969 -303 213 24 98 0 chr1 2417210 2417251 -279776413 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 257 309 79 8 chr1 2417982 2418108 -279775556 - MIR3 SINE MIR -63 145 11 216 0 0 0 chr1 2422073 2422097 -279771567 + (T)n Simple_repeat Simple_repeat 1 24 0 276 30 0 0 chr1 2422219 2422252 -279771412 + (CA)n Simple_repeat Simple_repeat 1 33 0 279 325 16 8 chr1 2422273 2422396 -279771268 + (CA)n Simple_repeat Simple_repeat 1 124 0 195 276 0 0 chr1 2422421 2422497 -279771167 + (CA)n Simple_repeat Simple_repeat 1 76 0 270 357 7 7 chr1 2422526 2422666 -279770998 + (CA)n Simple_repeat Simple_repeat 1 140 0 1432 288 31 6 chr1 2428696 2429175 -279764489 + L1MB5 LINE L1 5684 6174 0 2168 115 0 6 chr1 2429208 2429521 -279764143 + AluSq SINE Alu 1 311 -2 180 125 0 0 chr1 2431513 2431545 -279762119 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 2426 247 61 7 chr1 2433413 2434121 -279759543 + L1MB7 LINE L1 5427 6172 -12 1421 285 42 0 chr1 2434202 2434609 -279759055 - MER82 DNA MER2_type 0 653 230 476 182 17 149 chr1 2434621 2434802 -279758862 + Tigger1 DNA MER2_type 1 157 -2261 * 647 207 173 0 chr1 2434800 2434979 -279758685 + Tigger1 DNA MER2_type 2209 2418 0 * 808 245 15 15 chr1 2434979 2435177 -279758487 - MER82 DNA MER2_type -455 198 1 1925 172 0 6 chr1 2435829 2436143 -279757521 - AluJo SINE Alu 0 312 1 2106 130 7 0 chr1 2438875 2439176 -279754488 + AluSx SINE Alu 1 303 -9 1541 189 7 0 chr1 2439369 2439665 -279753999 + MER47A DNA MER2_type 69 366 0 249 289 45 77 chr1 2444604 2444760 -279748904 - MIR3 SINE MIR -37 171 21 22 0 0 0 chr1 2445420 2445442 -279748222 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr1 2446513 2446557 -279747107 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 243 0 58 chr1 2447545 2447648 -279746016 + GA-rich Low_complexity Low_complexity 2 98 0 760 41 0 0 chr1 2448888 2448985 -279744679 + AluSc SINE Alu 212 308 -1 298 374 6 18 chr1 2450236 2450399 -279743265 + (TG)n Simple_repeat Simple_repeat 2 162 0 244 259 84 69 chr1 2450712 2450843 -279742821 - MIR3 SINE MIR -45 163 31 186 43 0 0 chr1 2456381 2456404 -279737260 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1675 140 0 0 chr1 2457833 2458069 -279735595 - AluSx SINE Alu -76 236 1 227 345 18 0 chr1 2460539 2460649 -279733015 + (CACG)n Simple_repeat Simple_repeat 1 112 0 381 228 0 102 chr1 2461376 2461573 -279732091 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 243 262 19 56 chr1 2461586 2461743 -279731921 + (TGAA)n Simple_repeat Simple_repeat 1 151 0 2184 117 3 0 chr1 2463745 2464053 -279729611 - AluSg SINE Alu -1 309 1 253 411 47 0 chr1 2464331 2464498 -279729166 - MIR SINE MIR -37 225 44 474 165 124 0 chr1 2469276 2469373 -279724291 + MIR SINE MIR 36 144 -118 348 337 29 38 chr1 2470342 2470580 -279723084 - MIR SINE MIR -14 248 20 338 177 0 31 chr1 2470634 2470730 -279722934 + (CAT)n Simple_repeat Simple_repeat 3 95 0 1080 130 11 6 chr1 2470751 2471104 -279722560 + (CACCAT)n Simple_repeat Simple_repeat 1 356 0 258 231 0 0 chr1 2471132 2471223 -279722441 + (CAT)n Simple_repeat Simple_repeat 2 92 0 385 319 36 22 chr1 2471255 2471393 -279722271 - MIR SINE MIR -31 231 92 286 339 17 0 chr1 2472221 2472336 -279721328 + MIR SINE MIR 66 182 -80 293 200 0 0 chr1 2473918 2473973 -279719691 + MER2 DNA MER2_type 40 94 -251 216 97 0 0 chr1 2474098 2474129 -279719535 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 490 315 98 49 chr1 2474181 2474568 -279719096 - MLT1I LTR MaLR -3 406 1 196 279 16 49 chr1 2474680 2474741 -279718923 - MIR SINE MIR -12 250 192 2300 57 4 0 chr1 2474917 2475221 -279718443 - AluY SINE Alu 0 305 1 582 280 30 10 chr1 2475223 2475423 -279718241 - L1MC2 LINE L1 -16 6328 6125 420 326 71 10 chr1 2475435 2475631 -279718033 - L1MC2 LINE L1 -253 6091 5884 7950 28 5 3 chr1 2476503 2477552 -279716112 - L1PA3 LINE L1 -1018 5128 4078 7676 27 3 3 chr1 2477552 2478586 -279715078 + L1PA3 LINE L1 5116 6150 0 198 0 0 0 chr1 2478586 2478608 -279715056 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 201 74 0 0 chr1 2480472 2480499 -279713165 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 231 176 39 0 chr1 2482552 2482603 -279711061 + C-rich Low_complexity Low_complexity 3 55 0 184 300 67 22 chr1 2486067 2486157 -279707507 + MER5A DNA MER1_type 61 154 -35 428 337 56 22 chr1 2487342 2487520 -279706144 - MIR SINE MIR -72 190 7 565 230 11 0 chr1 2487642 2487820 -279705844 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 273 228 0 0 chr1 2487835 2487914 -279705750 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 674 201 0 22 chr1 2487931 2488115 -279705549 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 925 174 7 0 chr1 2488127 2488419 -279705245 + (TGGA)n Simple_repeat Simple_repeat 1 294 0 930 159 3 0 chr1 2488554 2488872 -279704792 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 270 0 0 0 chr1 2488888 2488918 -279704746 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 219 139 0 0 chr1 2488919 2488955 -279704709 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 203 275 73 55 chr1 2490334 2490443 -279703221 - MIR SINE MIR -111 151 41 1108 242 109 19 chr1 2490497 2490918 -279702746 + MLT1C LTR MaLR 9 467 0 1657 225 42 9 chr1 2491930 2492378 -279701286 - L1MB3 LINE L1 -8 6175 5713 214 204 0 0 chr1 2492629 2492673 -279700991 + MIR SINE MIR 98 141 -67 21 36 0 0 chr1 2494828 2494856 -279698808 + AT_rich Low_complexity Low_complexity 1 28 0 400 321 71 12 chr1 2495309 2495477 -279698187 - MIR SINE MIR -80 182 5 205 392 39 0 chr1 2496006 2496136 -279697528 + MIR SINE MIR 105 239 -23 326 232 32 95 chr1 2496586 2496776 -279696888 + G-rich Low_complexity Low_complexity 2 179 0 220 258 62 21 chr1 2496820 2496917 -279696747 + G-rich Low_complexity Low_complexity 2 102 0 324 252 65 26 chr1 2496938 2497093 -279696571 + G-rich Low_complexity Low_complexity 2 162 0 253 340 30 0 chr1 2497918 2498018 -279695646 + MIR SINE MIR 81 183 -79 936 275 57 8 chr1 2501002 2501373 -279692291 + MLT1C LTR MaLR 75 463 -4 312 292 35 0 chr1 2502504 2502617 -279691047 + L1MB4 LINE L1 5946 6062 -118 * 518 326 26 5 chr1 2502610 2502803 -279690861 + L1MB4 LINE L1 5978 6174 -6 477 352 28 0 chr1 2503993 2504172 -279689492 + MIR SINE MIR 50 233 -29 734 178 17 23 chr1 2504860 2505034 -279688630 + MER53 DNA DNA 13 185 -4 1864 214 26 5 chr1 2505241 2505620 -279688044 + MLT1B LTR MaLR 4 390 0 333 256 53 53 chr1 2505810 2505826 -279687838 + L1M4 LINE L1 3069 3084 -3062 2002 110 23 10 chr1 2505826 2506134 -279687530 + AluSx SINE Alu 1 312 0 333 256 53 53 chr1 2506134 2506250 -279687414 + L1M4 LINE L1 3083 3201 -2945 53 57 0 0 chr1 2506433 2506521 -279687143 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chr1 2507453 2507473 -279686191 + (T)n Simple_repeat Simple_repeat 1 20 0 319 203 14 0 chr1 2507596 2507665 -279685999 - MER53 DNA DNA -117 72 3 999 100 0 0 chr1 2512468 2512618 -279681046 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 1878 151 3 10 chr1 2514310 2514622 -279679042 - AluSx SINE Alu -2 310 1 205 325 33 0 chr1 2514670 2514744 -279678920 - MIR SINE MIR -61 147 71 183 328 76 23 chr1 2517093 2517224 -279676440 - MIR3 SINE MIR -46 162 25 462 190 27 54 chr1 2517672 2517856 -279675808 + (CA)n Simple_repeat Simple_repeat 1 179 0 210 207 29 23 chr1 2517897 2518071 -279675593 + (CA)n Simple_repeat Simple_repeat 1 175 0 437 228 47 12 chr1 2518082 2518253 -279675411 + (CA)n Simple_repeat Simple_repeat 1 177 0 350 268 48 18 chr1 2518292 2518460 -279675204 + (CA)n Simple_repeat Simple_repeat 1 173 0 2148 91 3 0 chr1 2521119 2521431 -279672233 + AluSx SINE Alu 1 313 0 319 229 135 0 chr1 2528447 2528543 -279665121 + MIR SINE MIR 35 143 -65 22 0 0 0 chr1 2533290 2533312 -279660352 + AT_rich Low_complexity Low_complexity 1 22 0 390 362 54 25 chr1 2533384 2533667 -279659997 + L1M4 LINE L1 4407 4697 -1449 22 0 0 0 chr1 2534076 2534098 -279659566 + AT_rich Low_complexity Low_complexity 1 22 0 224 175 16 0 chr1 2535008 2535071 -279658593 + GA-rich Low_complexity Low_complexity 1 64 0 234 128 0 0 chr1 2535416 2535455 -279658209 + (CA)n Simple_repeat Simple_repeat 1 39 0 474 228 12 20 chr1 2535495 2535850 -279657814 + (CA)n Simple_repeat Simple_repeat 1 351 0 245 105 0 0 chr1 2540354 2540392 -279653272 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 180 0 0 0 chr1 2542090 2542110 -279651554 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 205 304 0 38 chr1 2546050 2546129 -279647535 + (CACG)n Simple_repeat Simple_repeat 2 77 0 267 189 0 0 chr1 2546646 2546699 -279646965 + (TG)n Simple_repeat Simple_repeat 2 54 0 590 251 0 6 chr1 2546746 2546921 -279646743 + (CA)n Simple_repeat Simple_repeat 1 174 0 511 252 3 10 chr1 2550191 2550505 -279643159 + (TG)n Simple_repeat Simple_repeat 1 311 0 219 139 0 0 chr1 2550521 2550557 -279643107 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 760 189 0 11 chr1 2550570 2550750 -279642914 + (TG)n Simple_repeat Simple_repeat 1 178 0 441 270 79 11 chr1 2551130 2551319 -279642345 + MER20 DNA MER1_type 5 206 -13 207 200 22 0 chr1 2551387 2551432 -279642232 + CT-rich Low_complexity Low_complexity 4 49 0 180 225 12 25 chr1 2553307 2553387 -279640277 + CT-rich Low_complexity Low_complexity 2 80 0 1345 110 0 88 chr1 2555768 2556027 -279637637 - AluSg/x SINE Alu 0 312 86 249 314 0 10 chr1 2556532 2556634 -279637030 + L1M4 LINE L1 4934 5034 -1112 217 296 10 61 chr1 2556763 2556861 -279636803 + MIR SINE MIR 102 194 -68 239 313 115 0 chr1 2558194 2558290 -279635374 + L2 LINE L2 2420 2526 -788 979 209 164 21 chr1 2561418 2561748 -279631916 + MLT1B LTR MaLR 14 390 0 213 273 81 30 chr1 2562659 2562758 -279630906 + MIR SINE MIR 43 146 -62 225 94 0 0 chr1 2574954 2574986 -279618678 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2236 84 17 0 chr1 2575818 2576145 -279617519 + AluSx SINE Alu 6 337 0 1987 80 58 11 chr1 2576146 2576455 -279617209 + AluY SINE Alu 1 311 0 27 0 0 0 chr1 2576585 2576612 -279617052 + AT_rich Low_complexity Low_complexity 1 27 0 266 211 0 60 chr1 2577594 2577727 -279615937 + (GGCTG)n Simple_repeat Simple_repeat 1 125 0 291 329 90 7 chr1 2579259 2579414 -279614250 - MIR SINE MIR -83 179 12 24 0 0 0 chr1 2589516 2589540 -279604124 + AT_rich Low_complexity Low_complexity 1 24 0 270 81 0 0 chr1 2590447 2590484 -279603180 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 292 0 15 chr1 2590597 2590662 -279603002 + MIR SINE MIR 80 143 -119 24 53 0 0 chr1 2595005 2595043 -279598621 + GC_rich Low_complexity Low_complexity 1 38 0 214 235 0 0 chr1 2595252 2595303 -279598361 + C-rich Low_complexity Low_complexity 1 51 0 99 82 0 0 chr1 2595359 2595591 -279598073 + GC_rich Low_complexity Low_complexity 1 232 0 225 0 0 0 chr1 2595814 2595839 -279597825 + (CCG)n Simple_repeat Simple_repeat 2 26 0 211 209 30 30 chr1 2596351 2596418 -279597246 + C-rich Low_complexity Low_complexity 4 70 0 203 250 19 0 chr1 2599461 2599513 -279594151 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 2601111 2601133 -279592531 + GC_rich Low_complexity Low_complexity 1 22 0 216 189 0 0 chr1 2601458 2601495 -279592169 + MIR SINE MIR 108 144 -118 314 328 38 8 chr1 2604261 2604392 -279589272 - MIR SINE MIR -100 162 28 1198 177 0 0 chr1 2605706 2605926 -279587738 + L1MB8 LINE L1 5764 5983 -195 966 284 156 16 chr1 2606104 2606547 -279587117 - L2 LINE L2 0 3313 2809 1450 213 25 50 chr1 2606551 2606983 -279586681 + MLT1D LTR MaLR 89 503 -2 1003 265 58 11 chr1 2607327 2607686 -279585978 - HAL1 LINE L1 -895 1612 1237 293 282 261 31 chr1 2607691 2608017 -279585647 - HAL1 LINE L1 -1544 963 563 416 315 164 42 chr1 2608027 2608167 -279585497 - HAL1 LINE L1 -2046 461 339 2089 103 10 10 chr1 2608167 2608459 -279585205 - AluSq SINE Alu -21 292 1 416 315 164 42 chr1 2608459 2608727 -279584937 - HAL1 LINE L1 -2168 339 3 377 300 42 17 chr1 2609009 2609129 -279584535 + L1ME4a LINE L1 5978 6100 -21 1102 145 0 16 chr1 2609168 2609354 -279584310 + AluJb SINE Alu 129 311 -1 1079 263 138 5 chr1 2609804 2610188 -279583476 - L1MB4 LINE L1 0 6180 5746 2544 113 17 87 chr1 2611264 2611724 -279581940 + MSTA LTR MaLR 1 428 0 335 306 9 9 chr1 2612503 2612611 -279581053 + L2 LINE L2 3206 3313 0 628 172 22 21 chr1 2612627 2612908 -279580756 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 919 160 7 19 chr1 2612950 2613219 -279580445 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 755 189 15 15 chr1 2613233 2613766 -279579898 + (TGGG)n Simple_repeat Simple_repeat 1 533 0 261 243 0 0 chr1 2613782 2613852 -279579812 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 3202 217 29 41 chr1 2615823 2616879 -279576785 - L1MB4 LINE L1 -893 5253 4210 2198 253 44 6 chr1 2616881 2617958 -279575706 - L1MB4 LINE L1 -2698 3448 2128 1577 264 67 32 chr1 2617965 2618909 -279574755 - L1MEc LINE L1 -4287 2109 1133 712 174 0 43 chr1 2618953 2619091 -279574573 - FLAM_C SINE Alu -1 132 1 6599 156 56 48 chr1 2619241 2619771 -279573893 + Tigger1 DNA MER2_type 936 1460 -958 2441 138 40 0 chr1 2619771 2620142 -279573522 + L1PA15 LINE L1 5777 6162 -3 6599 156 56 48 chr1 2620142 2620615 -279573049 + Tigger1 DNA MER2_type 1460 1928 -490 1753 179 3 0 chr1 2620615 2620911 -279572753 - AluJo SINE Alu -15 297 1 6599 156 56 48 chr1 2620911 2621232 -279572432 + Tigger1 DNA MER2_type 1928 2277 -141 2064 129 10 0 chr1 2621232 2621542 -279572122 - AluSq SINE Alu 0 313 1 6599 156 56 48 chr1 2621542 2621686 -279571978 + Tigger1 DNA MER2_type 2277 2418 0 338 323 76 66 chr1 2621832 2622030 -279571634 + L1ME LINE L1 3595 3794 -2352 1028 154 0 0 chr1 2622050 2622206 -279571458 + AluJo SINE Alu 3 158 -154 186 209 0 0 chr1 2622338 2622381 -279571283 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 268 344 62 43 chr1 2622534 2622599 -279571065 + L1ME LINE L1 3784 3846 -2300 2064 128 6 6 chr1 2622599 2622911 -279570753 + AluSx SINE Alu 1 312 0 268 344 62 43 chr1 2622911 2623599 -279570065 + L1ME LINE L1 3846 4559 -1587 1010 215 10 0 chr1 2623599 2623804 -279569860 - L1MA4 LINE L1 -7 6293 6087 268 344 62 43 chr1 2623804 2623960 -279569704 + L1ME LINE L1 4559 4711 -1435 343 299 49 14 chr1 2624392 2624536 -279569128 + L1ME LINE L1 5364 5512 -654 226 285 58 7 chr1 2624820 2624957 -279568707 + (CA)n Simple_repeat Simple_repeat 1 144 0 * 251 248 57 25 chr1 2624886 2625043 -279568621 + (CATA)n Simple_repeat Simple_repeat 1 162 0 * 400 217 59 19 chr1 2624974 2625289 -279568375 + (CA)n Simple_repeat Simple_repeat 1 327 0 212 146 0 42 chr1 2625446 2625494 -279568170 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 306 331 64 25 chr1 2626375 2626532 -279567132 - MIR SINE MIR -92 170 8 308 248 51 15 chr1 2626839 2626976 -279566688 - LTR37A LTR ERV1 -1 425 284 197 343 97 22 chr1 2627424 2627558 -279566106 + L2 LINE L2 3103 3246 -26 544 158 20 82 chr1 2628106 2628252 -279565412 - MER31B LTR ERV1 -295 171 35 296 235 15 0 chr1 2630793 2630861 -279562803 - L1MC5 LINE L1 -918 7043 6975 653 220 147 81 chr1 2631385 2631767 -279561897 - MLT2D LTR ERVL -2 412 6 362 275 165 16 chr1 2638400 2638582 -279555082 + MIR SINE MIR 30 238 -24 1735 157 59 0 chr1 2639401 2639688 -279553976 - AluJo SINE Alu -8 304 1 192 409 0 0 chr1 2640133 2640226 -279553438 + L2 LINE L2 3146 3238 -75 864 219 0 13 chr1 2640408 2640729 -279552935 - MLT1B LTR MaLR -28 362 5 253 326 131 20 chr1 2641688 2641933 -279551731 + LTR16A1 LTR ERVL 1 272 -185 306 355 23 61 chr1 2642152 2642366 -279551298 + MIR SINE MIR 12 217 -45 620 295 52 44 chr1 2643383 2643769 -279549895 + L1MEd LINE L1 32 420 -5699 344 220 18 37 chr1 2643828 2643937 -279549727 + L1M4 LINE L1 14 120 -6422 266 264 28 0 chr1 2643944 2644016 -279549648 + ERVL LTR ERVL 3784 3857 -1907 1547 176 105 14 chr1 2644048 2644411 -279549253 + MSTA LTR MaLR 6 401 -27 435 291 34 22 chr1 2644548 2644727 -279548937 + L1M4 LINE L1 2630 2810 -3834 837 167 0 7 chr1 2647390 2647528 -279546136 + AluJb SINE Alu 160 296 -16 23 33 0 0 chr1 2651208 2651238 -279542426 + GC_rich Low_complexity Low_complexity 1 30 0 814 271 31 68 chr1 2653215 2653599 -279540065 - MLT1B LTR MaLR -12 378 9 526 263 186 43 chr1 2653818 2654141 -279539523 - MLT1F1 LTR MaLR -28 539 171 388 111 25 0 chr1 2654163 2654244 -279539420 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 206 191 26 70 chr1 2655148 2655263 -279538401 + (GTGTG)n Simple_repeat Simple_repeat 1 110 0 2410 59 0 0 chr1 2655447 2655736 -279537928 - AluY SINE Alu -22 289 1 1103 66 0 0 chr1 2655738 2655874 -279537790 - AluSq/x SINE Alu -177 136 1 414 121 0 0 chr1 2655875 2655941 -279537723 + THE1B LTR MaLR 299 364 0 368 242 66 0 chr1 2656970 2657078 -279536586 - MLT1I LTR MaLR -243 166 53 273 200 15 0 chr1 2657122 2657187 -279536477 + MER53 DNA DNA 99 164 -25 * 283 200 15 0 chr1 2657128 2657187 -279536477 - MER53 DNA DNA -94 95 36 2655 168 7 2 chr1 2657187 2657609 -279536055 - MSTB LTR MaLR 0 426 3 9352 165 21 24 chr1 2657612 2659267 -279534397 - MSTB-int LTR MaLR -1 1650 1 2686 158 7 19 chr1 2659267 2659698 -279533966 - MSTB LTR MaLR 0 426 1 509 278 17 52 chr1 2666540 2666713 -279526951 - MIR SINE MIR -76 186 20 209 333 48 48 chr1 2670577 2670703 -279522961 + MER91B DNA MER1_type 30 155 -35 1479 284 103 8 chr1 2670933 2671399 -279522265 - L1M4 LINE L1 -1326 4803 4383 1985 142 3 0 chr1 2671399 2671687 -279521977 + AluSx SINE Alu 1 289 -23 1479 284 103 8 chr1 2671687 2672133 -279521531 - L1M4 LINE L1 -1746 4383 3804 318 283 51 74 chr1 2672137 2672740 -279520924 - L1MEd LINE L1 -3756 2373 1819 413 278 56 48 chr1 2672781 2672998 -279520666 - L1MEd LINE L1 -4590 1720 1506 2526 101 27 27 chr1 2672998 2673373 -279520291 + THE1C LTR MaLR 1 375 0 10403 103 45 39 chr1 2673373 2674944 -279518720 + THE1C-int LTR MaLR 1 1580 0 2356 118 21 24 chr1 2674946 2675320 -279518344 + THE1C LTR MaLR 3 375 0 413 278 56 48 chr1 2675320 2675490 -279518174 - L1MEd LINE L1 -4804 1506 1326 795 292 42 132 chr1 2675652 2676206 -279517458 - L1MEd LINE L1 -5036 1093 601 323 127 16 0 chr1 2676943 2677006 -279516658 + GA-rich Low_complexity Low_complexity 2 65 0 895 207 93 21 chr1 2679140 2679420 -279514244 - MLT1C LTR MaLR -162 305 6 249 168 84 28 chr1 2679825 2679968 -279513696 + (CAGCC)n Simple_repeat Simple_repeat 5 155 0 448 258 110 12 chr1 2681355 2681518 -279512146 + MER45C DNA AcHobo 42 220 -733 22 35 0 0 chr1 2682077 2682106 -279511558 + AT_rich Low_complexity Low_complexity 1 29 0 317 208 28 0 chr1 2682966 2683038 -279510626 - MER69 DNA AcHobo -3 2523 2450 411 308 18 0 chr1 2684392 2684561 -279509103 + (CA)n Simple_repeat Simple_repeat 1 172 0 276 328 5 43 chr1 2684497 2684683 -279508981 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 378 242 4 0 chr1 2684739 2685018 -279508646 + (CA)n Simple_repeat Simple_repeat 1 280 0 468 239 6 10 chr1 2685055 2685365 -279508299 + (CA)n Simple_repeat Simple_repeat 1 308 0 290 227 127 9 chr1 2685412 2685522 -279508142 + MLT1A2 LTR MaLR 181 303 -71 281 240 13 0 chr1 2685534 2685609 -279508055 + (CA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr1 2686330 2686352 -279507312 + AT_rich Low_complexity Low_complexity 1 22 0 1532 155 85 7 chr1 2686359 2686630 -279507034 + AluJo SINE Alu 3 294 -18 280 281 21 42 chr1 2687585 2687681 -279505983 - MIR3 SINE MIR -20 188 95 454 299 24 6 chr1 2688049 2688224 -279505440 - MIR SINE MIR -63 145 11 1113 276 97 11 chr1 2688312 2688775 -279504889 + HAL1 LINE L1 1337 1839 -668 540 283 251 35 chr1 2688933 2689321 -279504343 + L1M2 LINE L1 1666 3127 -82 394 282 0 15 chr1 2689481 2689612 -279504052 - HAL1 LINE L1 -753 1754 1626 330 294 5 0 chr1 2691381 2691595 -279502069 + (TG)n Simple_repeat Simple_repeat 1 215 0 234 322 0 0 chr1 2691631 2691811 -279501853 + (TG)n Simple_repeat Simple_repeat 1 180 0 274 314 0 4 chr1 2691825 2692055 -279501609 + (TG)n Simple_repeat Simple_repeat 1 228 0 837 236 47 79 chr1 2695036 2695417 -279498247 - MLT1B LTR MaLR -21 369 1 245 326 139 0 chr1 2696991 2697120 -279496544 + MIR SINE MIR 46 192 -70 258 314 68 8 chr1 2698321 2698439 -279495225 + L2 LINE L2 3143 3267 -5 306 255 0 0 chr1 2699673 2699767 -279493897 + (TG)n Simple_repeat Simple_repeat 1 94 0 439 227 37 37 chr1 2699986 2700097 -279493567 + MER53 DNA DNA 1 114 -75 2259 160 24 3 chr1 2700097 2700479 -279493185 + MLT1B LTR MaLR 1 390 0 439 227 37 37 chr1 2700479 2700530 -279493134 + MER53 DNA DNA 113 163 -26 1080 147 0 0 chr1 2702650 2703394 -279490270 + (CAGCC)n Simple_repeat Simple_repeat 1 744 0 942 156 23 61 chr1 2704759 2705022 -279488642 - MLT1D LTR MaLR -206 299 47 532 381 34 19 chr1 2706430 2706750 -279486914 + L1MB5 LINE L1 5677 6001 -173 728 242 4 30 chr1 2706894 2707125 -279486539 + L1MB8 LINE L1 5948 6172 -6 246 333 28 0 chr1 2707305 2707413 -279486251 + MER53 DNA DNA 22 132 -57 289 172 16 0 chr1 2707466 2707530 -279486134 - MER53 DNA DNA -124 65 1 404 220 22 0 chr1 2709019 2709110 -279484554 + MIR SINE MIR 28 120 -142 1228 143 5 35 chr1 2710850 2711053 -279482611 + MER107 DNA MER1_type 1 197 0 448 259 125 14 chr1 2711841 2712182 -279481482 + MLT1C LTR MaLR 1 451 -16 268 400 0 7 chr1 2713404 2713544 -279480120 + (TG)n Simple_repeat Simple_repeat 1 139 0 227 250 0 30 chr1 2713613 2713745 -279479919 + (TG)n Simple_repeat Simple_repeat 1 128 0 248 239 32 13 chr1 2713797 2713952 -279479712 + (TG)n Simple_repeat Simple_repeat 1 158 0 386 250 0 22 chr1 2713985 2714169 -279479495 + (TG)n Simple_repeat Simple_repeat 1 180 0 373 240 11 17 chr1 2714186 2714365 -279479299 + (TG)n Simple_repeat Simple_repeat 1 178 0 785 243 0 0 chr1 2717359 2717507 -279476157 + FRAM SINE Alu 4 151 -15 196 248 0 16 chr1 2717892 2718017 -279475647 + (CA)n Simple_repeat Simple_repeat 1 123 0 233 320 96 6 chr1 2720408 2720564 -279473100 - MLT1K LTR MaLR -330 258 89 757 211 42 0 chr1 2721779 2721969 -279471695 - MLT1B LTR MaLR -78 312 115 428 190 117 15 chr1 2722057 2722180 -279471484 - MLT1B LTR MaLR -252 138 28 1347 266 59 11 chr1 2722899 2723372 -279470292 - L1MC1 LINE L1 0 6333 5838 262 250 0 0 chr1 2725116 2725176 -279468488 + GA-rich Low_complexity Low_complexity 3 62 0 209 269 29 0 chr1 2727237 2727341 -279466323 + (CACAC)n Simple_repeat Simple_repeat 5 111 0 850 285 79 25 chr1 2727700 2728142 -279465522 - MLT1D LTR MaLR 0 505 40 424 319 30 0 chr1 2728772 2728938 -279464726 + ERVL LTR ERVL 2145 2315 -3449 600 271 79 5 chr1 2729045 2729248 -279464416 - MER20 DNA MER1_type -1 218 1 576 225 60 161 chr1 2730732 2730823 -279462841 + MLT1B LTR MaLR 1 100 -290 294 29 0 0 chr1 2730823 2730858 -279462806 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 576 225 60 161 chr1 2730858 2730869 -279462795 + MLT1B LTR MaLR 100 111 -279 1981 136 0 0 chr1 2730869 2731148 -279462516 - AluSx SINE Alu -33 279 1 576 225 60 161 chr1 2731148 2731461 -279462203 + MLT1B LTR MaLR 111 375 -15 756 339 61 24 chr1 2732030 2732617 -279461047 + ERVL LTR ERVL 4768 5376 -388 202 290 0 19 chr1 2732650 2732757 -279460907 + (TG)n Simple_repeat Simple_repeat 1 105 0 518 239 6 17 chr1 2732770 2732950 -279460714 + (TG)n Simple_repeat Simple_repeat 1 178 0 489 249 0 17 chr1 2733007 2733188 -279460476 + (TG)n Simple_repeat Simple_repeat 1 178 0 517 216 0 28 chr1 2733249 2733430 -279460234 + (TG)n Simple_repeat Simple_repeat 1 176 0 1286 278 34 9 chr1 2734555 2734998 -279458666 + MLT1C LTR MaLR 4 457 -10 417 317 11 11 chr1 2736239 2736419 -279457245 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 132 38 0 chr1 2736683 2736736 -279456928 + (GGGTG)n Simple_repeat Simple_repeat 4 58 0 219 294 95 8 chr1 2736881 2737007 -279456657 + MIR3 SINE MIR 65 201 -7 348 257 73 0 chr1 2738369 2738478 -279455186 - MER53 DNA DNA -72 117 1 1165 254 69 8 chr1 2738733 2739123 -279454541 + MLT1C LTR MaLR 9 422 -45 248 209 60 0 chr1 2739160 2739227 -279454437 + MLT1C LTR MaLR 435 505 0 263 336 9 9 chr1 2739795 2739911 -279453753 + (CACCC)n Simple_repeat Simple_repeat 3 118 0 428 134 52 22 chr1 2740505 2740639 -279453025 + GA-rich Low_complexity Low_complexity 4 141 0 370 302 81 75 chr1 2748227 2748585 -279445079 - L2 LINE L2 -7 3265 2906 240 341 28 50 chr1 2751353 2751532 -279442132 + L2 LINE L2 2996 3170 -102 239 330 19 29 chr1 2752137 2752240 -279441424 - MIR SINE MIR -128 134 33 2046 119 7 3 chr1 2753606 2753900 -279439764 - AluSx SINE Alu -17 295 1 1180 44 11 33 chr1 2753916 2754099 -279439565 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 273 283 0 53 chr1 2759561 2759656 -279434008 - MIR SINE MIR -62 146 60 197 340 0 0 chr1 2761796 2761846 -279431818 + L2 LINE L2 3223 3272 0 295 356 8 8 chr1 2761948 2762066 -279431598 + (CACG)n Simple_repeat Simple_repeat 4 121 0 334 279 6 57 chr1 2765067 2765225 -279428439 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 668 257 125 64 chr1 2766568 2766976 -279426688 - MLT1C LTR MaLR -26 441 9 227 306 7 0 chr1 2767833 2767980 -279425684 + (CAGC)n Simple_repeat Simple_repeat 4 151 0 236 242 16 0 chr1 2768401 2768463 -279425201 + G-rich Low_complexity Low_complexity 3 65 0 630 325 59 6 chr1 2769797 2770117 -279423547 - MLT1E LTR MaLR -164 429 93 690 106 35 7 chr1 2771353 2771495 -279422169 + CT-rich Low_complexity Low_complexity 1 146 0 1070 296 41 11 chr1 2771495 2771937 -279421727 - L1MC3 LINE L1 -727 7058 6604 282 203 0 14 chr1 2772631 2772700 -279420964 - L1MD3 LINE L1 -385 7610 7543 * 287 207 11 35 chr1 2772697 2772784 -279420880 + L1MD3 LINE L1 7911 7995 0 231 261 0 0 chr1 2774002 2774048 -279419616 + polypurine Low_complexity Low_complexity 3 48 0 1541 165 83 0 chr1 2777092 2777358 -279416306 - AluJo SINE Alu -21 291 4 1149 235 74 6 chr1 2777405 2777728 -279415936 + L1ME2 LINE L1 5451 5795 -371 940 255 18 24 chr1 2778892 2779221 -279414443 + L1ME2 LINE L1 5785 6111 -53 1909 206 18 8 chr1 2779230 2779628 -279414036 - L1MB3 LINE L1 -1 6182 5781 888 189 65 9 chr1 2779633 2779850 -279413814 - Tigger7 DNA MER2_type -9 2482 2254 243 247 27 0 chr1 2779920 2779993 -279413671 - Tigger7 DNA MER2_type -295 2192 2118 3142 210 54 1 chr1 2780000 2780723 -279412941 - Tigger7 DNA MER2_type -1724 763 3 735 247 68 11 chr1 2780757 2781020 -279412644 - L1MB3 LINE L1 -402 5778 5501 320 149 32 75 chr1 2781899 2781993 -279411671 - L1M3 LINE L1 -619 5549 5460 308 333 0 18 chr1 2782416 2782587 -279411077 + G-rich Low_complexity Low_complexity 2 169 0 490 286 0 0 chr1 2783184 2783296 -279410368 + MER81 DNA DNA 3 114 0 413 307 132 21 chr1 2783650 2783839 -279409825 - MIR SINE MIR -7 255 46 2301 109 0 0 chr1 2784008 2784319 -279409345 - AluSx SINE Alu -1 311 1 1122 223 106 64 chr1 2785030 2785445 -279408219 + MLT1D LTR MaLR 5 445 -60 1997 92 44 4 chr1 2785445 2785754 -279407910 - AluY SINE Alu 0 320 1 1122 223 106 64 chr1 2785754 2785818 -279407846 + MLT1D LTR MaLR 445 505 0 307 303 0 13 chr1 2785919 2785995 -279407669 + L1ME LINE L1 1261 1335 -5195 232 252 69 88 chr1 2785996 2786155 -279407509 + L1ME LINE L1 1766 1921 -4619 * 1522 231 42 5 chr1 2786139 2786571 -279407093 + L1MB7 LINE L1 5565 6012 -172 1044 79 14 0 chr1 2786571 2786710 -279406954 - AluSp/q SINE Alu -17 296 156 567 179 62 0 chr1 2786717 2786862 -279406802 + L1MB7 LINE L1 6031 6184 0 441 251 44 98 chr1 2786862 2787065 -279406599 + L1ME LINE L1 1954 2145 -4576 2298 66 0 3 chr1 2787183 2787470 -279406194 + AluY SINE Alu 1 286 -25 574 275 39 14 chr1 2787486 2787693 -279405971 + LTR40b LTR ERVL 154 365 -97 592 246 94 70 chr1 2787709 2788355 -279405309 + L1ME LINE L1 2284 2910 -3630 524 279 56 45 chr1 2788378 2788611 -279405053 + L1ME LINE L1 2802 3042 -3498 1380 269 22 11 chr1 2788611 2788972 -279404692 - MLT1A1 LTR MaLR 0 365 1 524 279 56 45 chr1 2788972 2789093 -279404571 + L1ME LINE L1 3042 3160 -3380 330 253 0 0 chr1 2789093 2789172 -279404492 - MER96 DNA MER1_type? 0 175 97 918 292 45 14 chr1 2789216 2789634 -279404030 + L1ME LINE L1 4301 4731 -1809 393 118 0 128 chr1 2789637 2789739 -279403925 - LTR52 LTR ERVL 0 421 333 528 167 0 0 chr1 2789740 2789884 -279403780 + (CA)n Simple_repeat Simple_repeat 1 144 0 863 260 17 51 chr1 2789886 2790236 -279403428 - LTR52 LTR ERVL -80 341 4 1612 147 44 34 chr1 2790297 2790832 -279402832 + MER51A LTR ERV1 1 622 -12 902 301 135 26 chr1 2790853 2791137 -279402527 + L1ME LINE L1 4768 5020 -1520 2232 125 0 0 chr1 2791137 2791448 -279402216 + AluSx SINE Alu 1 311 -1 902 301 135 26 chr1 2791448 2791813 -279401851 + L1ME LINE L1 5020 5488 -1052 1276 305 52 45 chr1 2791827 2792054 -279401610 + L1ME LINE L1 5573 5797 -767 2228 100 3 10 chr1 2792054 2792363 -279401301 + AluSg SINE Alu 1 307 -3 1276 305 52 45 chr1 2792363 2792941 -279400723 + L1ME LINE L1 5797 6389 -175 3391 141 11 19 chr1 2793059 2793590 -279400074 + MER1A DNA MER1_type 1 527 0 180 0 0 0 chr1 2794428 2794448 -279399216 + (A)n Simple_repeat Simple_repeat 1 20 0 295 242 40 0 chr1 2796010 2796109 -279397555 + MER82 DNA MER2_type 338 440 -213 251 296 37 0 chr1 2796148 2796229 -279397435 + MER82 DNA MER2_type 570 653 0 234 48 0 95 chr1 2796229 2796271 -279397393 + L1MB7 LINE L1 6099 6136 -48 1006 226 169 10 chr1 2798247 2798561 -279395103 - MLT1A1 LTR MaLR -1 364 1 343 229 74 16 chr1 2798632 2798754 -279394910 - MER117 DNA MER1_type -34 163 35 193 344 16 0 chr1 2798902 2798966 -279394698 + L2 LINE L2 3195 3259 -13 23 0 0 0 chr1 2799831 2799854 -279393810 + GC_rich Low_complexity Low_complexity 1 23 0 430 248 26 0 chr1 2800118 2800231 -279393433 - MER3 DNA MER1_type -25 184 69 3791 98 4 6 chr1 2802268 2802780 -279390884 + MER9 LTR ERVK 1 511 0 347 214 30 15 chr1 2802858 2802989 -279390675 + CT-rich Low_complexity Low_complexity 2 134 0 673 277 33 5 chr1 2803211 2803395 -279390269 - MER53 DNA DNA 0 189 1 843 222 111 0 chr1 2804700 2804961 -279388703 + MLT1B LTR MaLR 94 383 -7 453 19 0 0 chr1 2805766 2805820 -279387844 + (CA)n Simple_repeat Simple_repeat 2 55 0 1614 190 169 5 chr1 2805945 2806313 -279387351 + MSTA LTR MaLR 1 428 0 265 214 18 0 chr1 2806548 2806604 -279387060 + MLT1D LTR MaLR 1 57 -448 645 252 66 34 chr1 2806612 2806993 -279386671 - MLT2B1 LTR ERVL -1 413 2 1333 198 88 35 chr1 2806996 2807396 -279386268 + MLT1D LTR MaLR 77 497 -8 320 295 29 22 chr1 2807397 2807536 -279386128 - L1ME LINE L1 -293 5828 5689 416 300 6 6 chr1 2810863 2811408 -279382256 + (TG)n Simple_repeat Simple_repeat 1 545 0 285 315 0 0 chr1 2811448 2811521 -279382143 + MIR SINE MIR 76 148 -114 507 164 214 0 chr1 2811521 2811661 -279382003 - MER69A DNA AcHobo -3 174 5 349 372 0 16 chr1 2811902 2812085 -279381579 + (CA)n Simple_repeat Simple_repeat 1 180 0 3277 127 45 0 chr1 2813246 2813735 -279379929 - MER75 DNA T2_type -3 511 1 340 287 110 27 chr1 2813785 2814218 -279379446 + MLT1H LTR MaLR 31 540 -2 1542 178 4 11 chr1 2814218 2814487 -279379177 - AluJb SINE Alu -45 267 1 1873 145 7 10 chr1 2815241 2815537 -279378127 + AluJb SINE Alu 1 295 -17 4385 131 101 47 chr1 2816219 2816999 -279376665 - LTR12 LTR ERV1 0 826 5 2272 171 48 34 chr1 2817026 2817609 -279376055 - pTR5 LTR ERV1 -1111 1327 737 1325 240 110 2 chr1 2817813 2818222 -279375442 - MLT1D LTR MaLR -52 453 1 783 124 91 0 chr1 2818471 2818592 -279375072 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr1 2818592 2818629 -279375035 + AT_rich Low_complexity Low_complexity 1 37 0 226 259 73 134 chr1 2819402 2819649 -279374015 - L2 LINE L2 -11 3261 3030 202 306 92 0 chr1 2822606 2822704 -279370960 - L2 LINE L2 -30 3242 3136 209 185 37 0 chr1 2822821 2822875 -279370789 - L2 LINE L2 -372 2942 2887 * 227 322 63 28 chr1 2822867 2823010 -279370654 + MIR SINE MIR 37 184 -78 867 220 258 0 chr1 2823164 2823501 -279370163 + MER31B LTR ERV1 43 466 0 206 241 0 19 chr1 2824313 2824367 -279369297 + CT-rich Low_complexity Low_complexity 1 53 0 337 306 133 31 chr1 2830917 2831143 -279362521 - L2 LINE L2 -344 2970 2702 2244 106 0 0 chr1 2831143 2831436 -279362228 - AluSq SINE Alu -19 294 2 337 306 133 31 chr1 2831436 2831526 -279362138 - L2 LINE L2 -612 2702 2622 299 317 0 0 chr1 2831526 2831706 -279361958 + GA-rich Low_complexity Low_complexity 1 180 0 * 336 300 0 0 chr1 2831595 2831775 -279361889 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 362 289 0 0 chr1 2831794 2831967 -279361697 + (GCTG)n Simple_repeat Simple_repeat 1 173 0 338 321 0 0 chr1 2831890 2832236 -279361428 + (TGGG)n Simple_repeat Simple_repeat 1 346 0 * 295 328 0 0 chr1 2832218 2832392 -279361272 + (GCTG)n Simple_repeat Simple_repeat 4 177 0 * 201 353 82 0 chr1 2832876 2832961 -279360703 + MIR SINE MIR 155 246 -16 803 265 95 33 chr1 2834266 2834602 -279359062 - MLT1A1 LTR MaLR -8 357 1 657 261 96 58 chr1 2834831 2835250 -279358414 + MLT1H LTR MaLR 14 490 -59 1349 136 10 5 chr1 2835252 2835458 -279358206 - AluJb SINE Alu -19 293 87 313 185 0 0 chr1 2835458 2835523 -279358141 + MLT1H LTR MaLR 485 549 0 687 312 44 16 chr1 2835620 2836050 -279357614 + L1ME LINE L1 3851 4292 -1854 1328 208 14 41 chr1 2836214 2836508 -279357156 + AluJb SINE Alu 10 295 -17 211 260 0 19 chr1 2836542 2836646 -279357018 + GA-rich Low_complexity Low_complexity 3 104 0 237 306 0 10 chr1 2836674 2836772 -279356892 + L1ME LINE L1 4741 4837 -1309 465 252 67 20 chr1 2836908 2837336 -279356328 + L1ME LINE L1 5026 5481 -689 237 155 14 84 chr1 2837338 2837409 -279356255 + L1P5 LINE L1 5397 5462 -692 981 285 138 42 chr1 2837487 2838243 -279355421 + L1ME LINE L1 51 918 -5152 1506 172 69 0 chr1 2838243 2838505 -279355159 + AluJb SINE Alu 31 310 -2 981 285 138 42 chr1 2838505 2838696 -279354968 + L1ME LINE L1 918 1089 -4981 330 281 94 25 chr1 2839439 2839599 -279354065 - MIR SINE MIR -28 234 64 1822 113 58 0 chr1 2841393 2841695 -279351969 - AluSx SINE Alu 0 318 1 540 92 92 0 chr1 2842061 2842224 -279351440 + (CA)n Simple_repeat Simple_repeat 1 178 0 185 370 151 0 chr1 2845354 2845473 -279348191 + MIR SINE MIR 118 254 -8 247 292 0 0 chr1 2845485 2845574 -279348090 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 1894 216 50 34 chr1 2845646 2846478 -279347186 + LTR13 LTR ERVK 1 901 -106 348 250 0 0 chr1 2847695 2847767 -279345897 + MIR SINE MIR 78 149 -59 7002 182 43 118 chr1 2847770 2849221 -279344443 + L1MB3 LINE L1 2878 4436 -1710 712 189 57 46 chr1 2849221 2849396 -279344268 + MER8 DNA MER2_type 1 177 -62 7002 182 43 118 chr1 2849396 2849429 -279344235 + L1MB3 LINE L1 4436 4470 -1676 341 186 43 0 chr1 2849429 2849499 -279344165 - Tigger2 DNA MER2_type -2645 73 1 7002 182 43 118 chr1 2849499 2850409 -279343255 + L1MB3 LINE L1 4470 5319 -827 1367 94 5 5 chr1 2850409 2850601 -279343063 - AluSg/x SINE Alu -24 288 97 4203 171 9 28 chr1 2850608 2850906 -279342758 + L1MB3 LINE L1 5317 5619 -564 2265 95 0 3 chr1 2850906 2851212 -279342452 + AluSg SINE Alu 1 305 -5 4203 171 9 28 chr1 2851212 2851797 -279341867 + L1MB3 LINE L1 5619 6183 0 353 193 0 0 chr1 3053056 3053113 -279140551 - AluJ/FLAM SINE Alu -245 57 1 1030 230 111 51 chr1 3053830 3054261 -279139403 - MLT1C LTR MaLR 0 467 11 837 176 20 0 chr1 3055124 3055272 -279138392 + FRAM SINE Alu 4 154 -22 1315 152 94 18 chr1 3056739 3057016 -279136648 - MER7A DNA MER2_type 0 346 51 1540 152 141 0 chr1 3057404 3057667 -279135997 + AluJb SINE Alu 1 300 -12 2610 56 0 0 chr1 3058386 3058688 -279134976 - AluY SINE Alu -9 302 1 1541 130 0 0 chr1 3058886 3059114 -279134550 + AluSg/x SINE Alu 81 310 0 858 236 86 17 chr1 3059605 3059906 -279133758 + MER33 DNA MER1_type 1 322 -2 210 236 0 0 chr1 3060014 3060069 -279133595 + CT-rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr1 3060376 3060415 -279133249 + AT_rich Low_complexity Low_complexity 1 39 0 2171 96 30 23 chr1 3060700 3061001 -279132663 - AluSp SINE Alu -8 305 3 33 43 0 0 chr1 3061049 3061096 -279132568 + AT_rich Low_complexity Low_complexity 1 47 0 1447 133 13 4 chr1 3061175 3061400 -279132264 + AluJb SINE Alu 73 299 -13 1722 127 0 4 chr1 3062094 3062330 -279131334 - AluSq SINE Alu 0 313 79 784 132 0 150 chr1 3062331 3062498 -279131166 - AluSc SINE Alu -35 274 133 2417 79 0 3 chr1 3062763 3063054 -279130610 + AluSg SINE Alu 2 291 -19 1845 145 91 0 chr1 3063171 3063447 -279130217 + AluJo SINE Alu 1 301 -11 2080 144 0 0 chr1 3063737 3064036 -279129628 + AluSx SINE Alu 1 299 -13 2495 37 27 7 chr1 3064445 3064743 -279128921 + AluY SINE Alu 1 304 -7 2070 131 17 7 chr1 3065985 3066283 -279127381 + AluSx SINE Alu 1 301 -11 2270 121 0 3 chr1 3066287 3066594 -279127070 + AluSx SINE Alu 1 306 -6 266 243 196 0 chr1 3066826 3066933 -279126731 + MIR SINE MIR 15 142 -120 2069 128 7 0 chr1 3068374 3068664 -279125000 + AluJo SINE Alu 1 292 -20 599 268 141 19 chr1 3068665 3068878 -279124786 + MIR SINE MIR 21 259 -3 225 0 0 0 chr1 3070329 3070354 -279123310 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 93 3 17 chr1 3070499 3070801 -279122863 - AluY SINE Alu -13 298 1 729 213 128 0 chr1 3070801 3070942 -279122722 - FRAM SINE Alu -5 161 3 2190 96 21 10 chr1 3071149 3071440 -279122224 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr1 3073136 3073160 -279120504 + AT_rich Low_complexity Low_complexity 1 24 0 2276 98 14 0 chr1 3073487 3073782 -279119882 + AluSc SINE Alu 1 299 -10 1921 156 14 0 chr1 3073786 3074075 -279119589 + AluJb SINE Alu 1 293 -19 234 250 16 16 chr1 3075658 3075722 -279117942 + L2 LINE L2 3207 3270 -2 2452 67 0 13 chr1 3075865 3076178 -279117486 - AluY SINE Alu -2 309 1 712 156 16 8 chr1 3076224 3076352 -279117312 - MER46A DNA MER2_type 0 236 108 354 316 33 0 chr1 3078000 3078152 -279115512 + L1MB1 LINE L1 6005 6161 -7 357 211 87 0 chr1 3078722 3078826 -279114838 - L2 LINE L2 -18 3295 3183 572 190 83 0 chr1 3078982 3079103 -279114561 - L1MB3 LINE L1 -1 6182 6052 1785 179 13 16 chr1 3079150 3079457 -279114207 + AluJb SINE Alu 1 306 -6 1562 121 8 32 chr1 3079552 3079801 -279113863 - AluJb SINE Alu -64 248 6 21 82 0 0 chr1 3080177 3080226 -279113438 + AT_rich Low_complexity Low_complexity 1 49 0 236 274 0 16 chr1 3081158 3081220 -279112444 - L1ME3A LINE L1 -199 5971 5911 285 329 121 9 chr1 3081240 3081471 -279112193 - L1ME3A LINE L1 -358 5812 5556 253 342 40 13 chr1 3082012 3082237 -279111427 - L1ME3A LINE L1 -832 5314 5084 451 111 0 141 chr1 3082247 3082286 -279111378 - MSTA LTR MaLR 0 428 410 2315 77 7 0 chr1 3082286 3082573 -279111091 + AluSp SINE Alu 1 289 -24 451 111 0 141 chr1 3082573 3082632 -279111032 - MSTA LTR MaLR -18 410 344 234 116 0 0 chr1 3084410 3084453 -279109211 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 265 296 48 0 chr1 3084525 3084650 -279109014 - L1MC5 LINE L1 -106 7855 7725 1175 276 95 49 chr1 3084790 3085645 -279108019 - L1MC5 LINE L1 -446 7515 6615 346 280 62 52 chr1 3086655 3086848 -279106816 - MLT1E1 LTR MaLR -163 491 297 247 258 82 44 chr1 3087037 3087196 -279106468 - L1ME LINE L1 -5124 946 782 844 226 118 19 chr1 3087196 3087519 -279106145 - L1MB7 LINE L1 -9 6175 5821 251 190 35 0 chr1 3087530 3087588 -279106076 - L1ME LINE L1 -5297 773 714 260 356 56 23 chr1 3087613 3087829 -279105835 + L1M4 LINE L1 4943 5165 -981 398 136 99 12 chr1 3087835 3087916 -279105748 + L1MB2 LINE L1 6028 6115 -56 288 216 58 90 chr1 3088012 3088231 -279105433 - L2 LINE L2 -535 2779 2499 252 264 169 41 chr1 3088638 3088952 -279104712 - MLT1H LTR MaLR -111 438 85 2089 102 3 39 chr1 3089317 3089622 -279104042 - AluSx SINE Alu -18 294 1 1902 127 57 0 chr1 3090587 3090870 -279102794 + AluSx SINE Alu 1 299 -13 1184 125 6 0 chr1 3092703 3092871 -279100793 - AluSg/x SINE Alu -24 288 120 333 216 0 0 chr1 3092971 3093059 -279100605 + G-rich Low_complexity Low_complexity 1 88 0 209 159 45 0 chr1 3093085 3093129 -279100535 + G-rich Low_complexity Low_complexity 6 51 0 264 284 0 0 chr1 3093143 3093238 -279100426 + G-rich Low_complexity Low_complexity 1 95 0 823 105 0 9 chr1 3093325 3093439 -279100225 + AluSg/x SINE Alu 182 294 -16 183 156 0 0 chr1 3093655 3093687 -279099977 + (TA)n Simple_repeat Simple_repeat 2 33 0 2395 74 0 49 chr1 3093812 3094136 -279099528 - AluSg SINE Alu -2 308 1 21 36 0 0 chr1 3094334 3094362 -279099302 + AT_rich Low_complexity Low_complexity 1 28 0 232 36 0 0 chr1 3095446 3095474 -279098190 + MIR SINE MIR 116 143 -119 2477 84 0 0 chr1 3095951 3096248 -279097416 - AluSx SINE Alu -15 297 1 1273 161 0 28 chr1 3096254 3096472 -279097192 - AluJo SINE Alu -13 299 88 3075 100 16 9 chr1 3096563 3097012 -279096652 - LTR3b LTR ERVK -48 452 1 348 210 180 0 chr1 3097068 3097168 -279096496 + MSTC LTR MaLR 11 128 -268 1830 159 10 0 chr1 3097191 3097481 -279096183 + AluJb SINE Alu 1 293 -19 2502 65 3 0 chr1 3097484 3097776 -279095888 + AluSp SINE Alu 1 293 -20 466 189 90 7 chr1 3097804 3097962 -279095702 + MSTC LTR MaLR 226 428 0 1829 167 7 3 chr1 3097972 3098266 -279095398 - AluJb SINE Alu -13 299 5 2129 133 3 0 chr1 3098297 3098590 -279095074 + AluSx SINE Alu 1 294 -18 278 153 125 0 chr1 3098670 3098742 -279094922 - L1MEc LINE L1 -6048 348 268 1625 126 168 3 chr1 3098769 3099103 -279094561 + MSTA LTR MaLR 1 389 -39 2332 64 0 37 chr1 3099103 3099436 -279094228 + AluY SINE Alu 1 322 0 1954 153 142 14 chr1 3099451 3099942 -279093722 - LOR1-int LTR ERV1 -3269 3936 1515 8221 60 14 5 chr1 3099942 3100940 -279092724 + LTR13 LTR ERVK 1 1007 0 1175 146 19 5 chr1 3100940 3101146 -279092518 + HERVK13 LTR ERVK 1 209 -7907 705 228 213 68 chr1 3101137 3101654 -279092010 + HERVK13 LTR ERVK 727 1318 -6798 * 421 283 12 58 chr1 3101641 3101814 -279091850 + HERVK13 LTR ERVK 3965 4129 -3987 * 3085 244 3 3 chr1 3101805 3103214 -279090450 + HERVK13 LTR ERVK 4572 6092 -2024 * 6199 217 3 24 chr1 3103203 3103437 -279090227 + HERVK13 LTR ERVK 6733 6970 -1146 2404 74 3 0 chr1 3103437 3103746 -279089918 + AluY SINE Alu 1 310 -1 6199 217 3 24 chr1 3103746 3104924 -279088740 + HERVK13 LTR ERVK 6970 8116 0 3702 40 4 0 chr1 3104924 3105401 -279088263 + LTR13 LTR ERVK 1 479 -528 1009 248 4 18 chr1 3105404 3105678 -279087986 - HERVK13 LTR ERVK -2972 5144 4875 1995 119 9 3 chr1 3105680 3106007 -279087657 + THE1A LTR MaLR 27 355 0 1873 129 5 18 chr1 3106007 3106438 -279087226 - LTR38-int LTR ERV1 -1097 689 364 * 2281 173 70 0 chr1 3106424 3106868 -279086796 - LTR38-int LTR ERV1 -1310 476 2 1727 152 29 79 chr1 3106869 3107289 -279086375 - LTR38 LTR ERV1 0 556 158 2176 105 20 0 chr1 3107291 3107597 -279086067 - AluSx SINE Alu 0 312 1 1994 140 11 91 chr1 3107643 3107877 -279085787 - MER4D LTR ERV1 -468 435 184 2219 115 0 0 chr1 3107877 3108182 -279085482 - AluSx SINE Alu -7 305 1 1994 140 11 91 chr1 3108182 3108393 -279085271 - MER4D LTR ERV1 -719 184 26 2382 71 0 6 chr1 3108393 3108704 -279084960 - AluY SINE Alu -2 309 1 1994 140 11 91 chr1 3108704 3108721 -279084943 - MER4D LTR ERV1 -877 26 9 1742 171 4 0 chr1 3108722 3109028 -279084636 + AluJb SINE Alu 1 307 0 1827 126 16 55 chr1 3109037 3109347 -279084317 + AluSx SINE Alu 1 298 -14 2157 99 3 48 chr1 3109454 3109829 -279083835 + MER4A LTR ERV1 1 358 -306 1655 168 7 7 chr1 3109870 3110180 -279083484 + MER4A LTR ERV1 355 664 0 183 302 95 0 chr1 3111442 3111505 -279082159 - MIR SINE MIR -62 200 132 240 297 33 33 chr1 3111571 3111662 -279082002 + L2 LINE L2 3181 3271 -1 2312 85 3 0 chr1 3111794 3112099 -279081565 - AluSx SINE Alu -6 306 1 1736 107 85 0 chr1 3112232 3112503 -279081161 + AluJb SINE Alu 1 294 -18 3875 146 35 50 chr1 3112532 3112651 -279081013 - LTR8A LTR ERV1 0 727 608 2236 101 3 0 chr1 3112651 3112957 -279080707 - AluY SINE Alu -4 307 1 3875 146 35 50 chr1 3112957 3113479 -279080185 - LTR8A LTR ERV1 -119 608 96 1897 112 69 0 chr1 3113479 3113755 -279079909 + AluSp SINE Alu 1 295 -18 3875 146 35 50 chr1 3113755 3113850 -279079814 - LTR8A LTR ERV1 -631 96 1 2215 78 0 4 chr1 3114126 3114407 -279079257 + AluSc SINE Alu 14 293 -16 2053 132 0 0 chr1 3114818 3115107 -279078557 + AluJb SINE Alu 1 289 -23 2298 96 3 0 chr1 3115116 3115419 -279078245 + AluSp SINE Alu 1 304 -9 244 274 12 12 chr1 3119768 3119852 -279073812 + GA-rich Low_complexity Low_complexity 1 84 0 232 229 71 14 chr1 3120143 3120213 -279073451 + MIR SINE MIR 110 183 -79 1834 154 10 7 chr1 3120361 3120654 -279073010 - AluSx SINE Alu -18 294 1 2159 117 0 0 chr1 3120705 3121003 -279072661 + AluSx SINE Alu 6 303 -9 2184 96 14 0 chr1 3121863 3122156 -279071508 - AluSp SINE Alu -16 297 1 2241 113 0 0 chr1 3123432 3123733 -279069931 - AluSq SINE Alu -12 301 1 1776 174 19 6 chr1 3123739 3124055 -279069609 - 7SLRNA srpRNA srpRNA 0 320 1 1563 101 5 5 chr1 3124276 3124493 -279069171 + AluSp SINE Alu 2 218 -95 1136 139 0 6 chr1 3124493 3124665 -279068999 + AluSp SINE Alu 143 313 0 1924 141 3 3 chr1 3124888 3125172 -279068492 - AluJo SINE Alu -28 284 1 220 204 19 37 chr1 3125634 3125688 -279067976 - L3 LINE CR1 -319 1258 1206 2040 110 17 0 chr1 3126047 3126339 -279067325 - AluSc SINE Alu -7 302 6 300 85 64 0 chr1 3126339 3126386 -279067278 - Alu SINE Alu -250 50 1 274 306 12 0 chr1 3126611 3126696 -279066968 + MER7A DNA MER2_type 1 84 -262 189 107 0 0 chr1 3128234 3128262 -279065402 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 252 328 46 27 chr1 3131836 3131962 -279061702 - MIR SINE MIR -46 162 33 203 253 0 40 chr1 3134284 3134359 -279059305 + G-rich Low_complexity Low_complexity 6 77 0 191 122 0 24 chr1 3134461 3134502 -279059162 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 640 236 10 45 chr1 3135778 3135977 -279057687 + MER63A DNA MER1_type 1 192 -18 236 254 16 16 chr1 3136190 3136253 -279057411 + CT-rich Low_complexity Low_complexity 3 65 0 183 339 57 73 chr1 3137371 3137495 -279056169 - MIR SINE MIR -113 149 28 241 231 62 15 chr1 3138128 3138193 -279055471 - L2 LINE L2 -1 3312 3245 1816 162 7 13 chr1 3138650 3138958 -279054706 + AluJb SINE Alu 1 306 -6 277 341 41 32 chr1 3139125 3139248 -279054416 + MIR SINE MIR 124 247 -15 2294 103 0 0 chr1 3139908 3140209 -279053455 + AluSc SINE Alu 1 301 -8 719 288 126 3 chr1 3140542 3140868 -279052796 + HAL1 LINE L1 1 366 -2141 1717 195 13 3 chr1 3140881 3141189 -279052475 + AluJb SINE Alu 1 311 -1 1333 249 167 34 chr1 3141286 3141994 -279051670 + HAL1 LINE L1 856 1683 -824 2175 117 3 0 chr1 3141994 3142293 -279051371 - AluSq SINE Alu -13 300 1 1333 249 167 34 chr1 3142293 3142382 -279051282 + HAL1 LINE L1 1683 1759 -748 657 248 109 29 chr1 3142465 3142812 -279050852 + HAL1 LINE L1 2133 2507 0 300 286 0 0 chr1 3143711 3143795 -279049869 + CT-rich Low_complexity Low_complexity 2 85 0 212 149 21 0 chr1 3145031 3145078 -279048586 + C-rich Low_complexity Low_complexity 3 50 0 235 289 67 22 chr1 3145243 3145378 -279048286 - MIR3 SINE MIR -61 147 7 489 269 0 8 chr1 3146215 3146361 -279047303 + L1MDa LINE L1 1904 2073 -4493 838 269 46 9 chr1 3146362 3146686 -279046978 + L1MDa LINE L1 3222 3557 -2983 349 139 119 40 chr1 3146723 3146824 -279046840 + L1MC4 LINE L1 7918 8026 -16 474 306 77 32 chr1 3146909 3147157 -279046507 + MLT1K LTR MaLR 264 522 -66 228 245 0 0 chr1 3147225 3147274 -279046390 - L1ME LINE L1 -477 5644 5596 398 323 29 32 chr1 3147471 3147815 -279045849 + L1MDa LINE L1 3543 3885 -2655 2041 116 0 27 chr1 3147817 3148118 -279045546 - AluSg SINE Alu -17 293 1 1735 164 6 25 chr1 3148150 3148468 -279045196 + AluJb SINE Alu 1 312 0 531 155 0 31 chr1 3148483 3148561 -279045103 + AluJ/FRAM SINE Alu 216 292 -20 2150 102 7 0 chr1 3148561 3148855 -279044809 + AluSc SINE Alu 1 296 -13 531 155 0 31 chr1 3148855 3148873 -279044791 + AluJ/FRAM SINE Alu 292 309 -3 303 274 19 0 chr1 3148884 3148990 -279044674 + L1MDa LINE L1 3906 4013 -2527 1831 127 3 47 chr1 3148993 3149104 -279044560 + AluJb SINE Alu 2 116 -196 2336 73 3 3 chr1 3149104 3149406 -279044258 - AluY SINE Alu -9 302 1 1831 127 3 47 chr1 3149406 3149594 -279044070 + AluJb SINE Alu 116 288 -24 211 220 0 0 chr1 3149607 3149657 -279044007 + A-rich Low_complexity Low_complexity 1 50 0 257 289 0 10 chr1 3149681 3149785 -279043879 + L1MDa LINE L1 4025 4127 -2413 181 280 113 48 chr1 3150565 3150682 -279042982 + MIR3 SINE MIR 1 134 -74 2175 101 3 10 chr1 3150682 3150988 -279042676 - AluSg1 SINE Alu -5 304 1 181 280 113 48 chr1 3150988 3151038 -279042626 + MIR3 SINE MIR 134 179 -29 184 343 45 0 chr1 3152368 3152435 -279041229 + MIR3 SINE MIR 112 181 -27 2241 83 9 46 chr1 3153411 3153736 -279039928 + AluSp SINE Alu 1 313 0 256 194 54 75 chr1 3154668 3154761 -279038903 - LTR45B LTR ERV1 -1 488 398 1267 177 165 11 chr1 3154770 3155064 -279038600 + AluSg SINE Alu 1 334 0 2389 58 0 0 chr1 3155146 3155437 -279038227 + AluY SINE Alu 1 291 -20 3882 190 31 52 chr1 3155656 3156646 -279037018 - LTR5 LTR ERVK 0 969 1 1475 199 39 77 chr1 3156770 3156864 -279036800 + MER7A DNA MER2_type 1 97 -2941 2384 79 3 0 chr1 3156864 3157167 -279036497 + AluY SINE Alu 1 304 -7 1475 199 39 77 chr1 3157167 3157434 -279036230 + MER7A DNA MER2_type 97 346 0 3872 181 79 51 chr1 3157900 3158828 -279034836 + LTR13 LTR ERVK 1 954 0 1139 106 0 0 chr1 3159130 3159290 -279034374 + AluSg/x SINE Alu 153 312 0 22 0 0 0 chr1 3159701 3159723 -279033941 + GC_rich Low_complexity Low_complexity 1 22 0 614 347 157 2 chr1 3161447 3161862 -279031802 - L2 LINE L2 -1 3312 2834 221 259 193 7 chr1 3161924 3162059 -279031605 - L2 LINE L2 -637 2677 2518 221 0 0 33 chr1 3162517 3162547 -279031117 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2096 73 18 0 chr1 3162589 3162863 -279030801 - AluY SINE Alu -32 279 1 1942 122 7 26 chr1 3163113 3163417 -279030247 - AluJb SINE Alu -14 298 1 278 309 112 45 chr1 3164467 3164690 -279028974 - L2 LINE L2 -2 3270 3033 3072 114 109 80 chr1 3165348 3165964 -279027700 - MER51A LTR ERV1 0 634 1 1868 107 52 10 chr1 3166312 3166602 -279027062 + AluSx SINE Alu 1 302 -10 2320 91 0 0 chr1 3169171 3169469 -279024195 - AluSg SINE Alu -12 298 1 283 324 56 21 chr1 3171826 3171968 -279021696 + MIR SINE MIR 3 149 -113 194 250 31 16 chr1 3175059 3175123 -279018541 + MIR SINE MIR 79 143 -119 262 299 86 0 chr1 3176548 3176665 -279016999 - MIR SINE MIR -72 190 64 182 325 51 26 chr1 3177351 3177468 -279016196 - L2 LINE L2 -144 3128 3009 1574 153 29 70 chr1 3178031 3178345 -279015319 - AluJo SINE Alu -2 310 10 830 147 10 28 chr1 3180108 3180651 -279013013 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 789 137 6 27 chr1 3180671 3180854 -279012810 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 738 149 7 18 chr1 3180869 3181148 -279012516 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 620 164 11 27 chr1 3181159 3181342 -279012322 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 753 185 4 15 chr1 3181368 3181639 -279012025 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 253 109 36 18 chr1 3181640 3181695 -279011969 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 2230 101 0 0 chr1 3182012 3182310 -279011354 - AluSx SINE Alu -14 298 1 400 306 38 48 chr1 3183863 3184386 -279009278 - TAR1 Satellite telomeric -570 1541 1024 206 385 19 0 chr1 3186093 3186197 -279007467 - MIR3 SINE MIR -7 201 96 1962 105 30 23 chr1 3186831 3187110 -279006554 + AluSx SINE Alu 1 284 -28 414 0 0 0 chr1 3187110 3187156 -279006508 + (CA)n Simple_repeat Simple_repeat 1 46 0 1962 105 30 23 chr1 3187156 3187180 -279006484 + AluSx SINE Alu 284 306 -6 189 0 0 0 chr1 3188815 3188836 -279004828 + (CCCCG)n Simple_repeat Simple_repeat 5 25 0 345 275 101 0 chr1 3194178 3194316 -278999348 + MIR SINE MIR 20 171 -91 306 106 0 0 chr1 3195178 3195225 -278998439 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 349 177 16 chr1 3195812 3196004 -278997660 - MIR SINE MIR -6 256 34 325 333 8 8 chr1 3196195 3196321 -278997343 + (TG)n Simple_repeat Simple_repeat 1 126 0 401 343 129 5 chr1 3198417 3198618 -278995046 + MIR SINE MIR 2 227 -35 336 308 19 9 chr1 3200694 3200801 -278992863 - MIR SINE MIR -65 197 90 23 0 0 0 chr1 3200917 3200940 -278992724 + GC_rich Low_complexity Low_complexity 1 23 0 283 286 39 77 chr1 3201716 3201858 -278991806 + L1M4 LINE L1 5735 5871 -307 811 181 7 7 chr1 3201864 3202013 -278991651 + FRAM SINE Alu 19 167 -9 201 139 28 0 chr1 3202579 3202615 -278991049 + L2 LINE L2 3137 3173 -99 545 298 99 8 chr1 3202620 3202882 -278990782 + MER33 DNA MER1_type 13 298 -26 418 257 76 76 chr1 3205110 3205238 -278988426 + MIR SINE MIR 23 153 -109 2125 111 0 13 chr1 3205238 3205544 -278988120 + AluSx SINE Alu 1 302 -10 418 257 76 76 chr1 3205544 3205586 -278988078 + MIR SINE MIR 152 193 -69 2029 64 64 4 chr1 3206253 3206520 -278987144 - AluSx SINE Alu -17 295 13 236 234 32 53 chr1 3207238 3207332 -278986332 + C-rich Low_complexity Low_complexity 4 95 0 212 364 96 11 chr1 3209943 3210130 -278983534 - L2 LINE L2 -842 2472 2270 234 298 276 0 chr1 3211072 3211300 -278982364 + L2 LINE L2 2425 2715 -599 233 232 40 0 chr1 3212049 3212148 -278981516 - MSR1 Satellite Satellite -1 110 8 241 227 41 0 chr1 3212260 3212357 -278981307 - MSR1 Satellite Satellite -1 110 10 246 206 41 0 chr1 3212435 3212672 -278980992 - MSR1 Satellite Satellite -1 246 1 349 184 21 100 chr1 3212733 3212923 -278980741 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 246 206 41 0 chr1 3212963 3213095 -278980569 - MSR1 Satellite Satellite -1 137 1 289 188 0 134 chr1 3213121 3213323 -278980341 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 200 264 127 0 chr1 3213470 3213564 -278980100 - MIR SINE MIR -56 152 46 227 310 30 50 chr1 3213932 3214032 -278979632 + L2 LINE L2 3216 3313 0 189 225 34 0 chr1 3214913 3215002 -278978662 + (CA)n Simple_repeat Simple_repeat 1 92 0 219 317 10 10 chr1 3215029 3215130 -278978534 + (CA)n Simple_repeat Simple_repeat 1 101 0 276 120 0 0 chr1 3219333 3219383 -278974281 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 333 358 40 0 chr1 3220135 3220286 -278973378 - MIR SINE MIR -78 184 28 534 256 235 21 chr1 3223124 3223503 -278970161 + MLT1K LTR MaLR 19 478 -110 337 190 13 25 chr1 3223643 3223722 -278969942 + MLT1K LTR MaLR 452 529 -59 281 323 50 0 chr1 3226011 3226110 -278967554 - MIR SINE MIR -88 174 71 260 302 62 10 chr1 3226579 3226675 -278966989 - MIR3 SINE MIR -41 167 67 597 294 11 0 chr1 3226687 3226864 -278966800 + L1MB5 LINE L1 5698 5876 -298 372 337 97 42 chr1 3226943 3227631 -278966033 + L1M4c LINE L1 796 1493 -4891 253 318 121 15 chr1 3228165 3228297 -278965367 - MER5A DNA MER1_type 0 189 44 1666 178 0 35 chr1 3229042 3229356 -278964308 + AluJo SINE Alu 1 303 -9 408 232 126 0 chr1 3230032 3230183 -278963481 + MER20 DNA MER1_type 2 171 -48 254 260 82 48 chr1 3230283 3230429 -278963235 - MIR3 SINE MIR -55 153 3 333 340 0 38 chr1 3230585 3230770 -278962894 + C-rich Low_complexity Low_complexity 2 179 0 383 254 6 42 chr1 3230797 3230962 -278962702 + CT-rich Low_complexity Low_complexity 6 164 0 239 274 105 0 chr1 3233001 3233096 -278960568 - MIR SINE MIR -124 138 34 527 291 31 41 chr1 3233436 3233632 -278960032 + MIR SINE MIR 55 248 -14 216 307 160 40 chr1 3235285 3235435 -278958229 - MIR SINE MIR -34 228 61 208 250 111 28 chr1 3236143 3236215 -278957449 + L2 LINE L2 3232 3309 -4 2223 103 3 7 chr1 3236354 3236664 -278957000 - AluSx SINE Alu -3 309 1 198 319 43 11 chr1 3236840 3236934 -278956730 - MIR SINE MIR -103 159 63 313 374 9 9 chr1 3238338 3238445 -278955219 - L1MC5 LINE L1 -167 7794 7688 240 188 25 75 chr1 3238445 3238499 -278955165 + MER116 DNA Mariner 1 51 -29 288 0 0 0 chr1 3238499 3238531 -278955133 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 188 25 75 chr1 3238531 3238556 -278955108 + MER116 DNA Mariner 51 76 -4 2273 94 0 7 chr1 3239270 3239578 -278954086 - AluSc SINE Alu -3 306 1 1069 196 78 156 chr1 3239641 3240181 -278953483 - MLT1D LTR MaLR -7 498 1 191 227 23 0 chr1 3240639 3240683 -278952981 - MIR SINE MIR -24 238 194 873 201 10 45 chr1 3240686 3240885 -278952779 + AluJo SINE Alu 91 282 -30 2033 97 50 13 chr1 3240893 3241192 -278952472 - AluSq SINE Alu -1 312 3 1109 161 0 0 chr1 3241212 3241404 -278952260 + AluSg/x SINE Alu 121 312 0 259 175 225 0 chr1 3243192 3243272 -278950392 + MER39 LTR ERV1 291 388 -319 2096 76 69 3 chr1 3243324 3243613 -278950051 - AluY SINE Alu -3 308 1 412 324 23 6 chr1 3243639 3243815 -278949849 + MER39 LTR ERV1 500 678 -29 188 246 77 31 chr1 3243917 3243982 -278949682 + MIR SINE MIR 86 153 -109 392 182 149 41 chr1 3244320 3244441 -278949223 + MER34C LTR ERV1 4 137 -448 266 250 93 9 chr1 3244659 3244767 -278948897 + LTR48 LTR ERV1 616 732 -55 1082 116 12 6 chr1 3244974 3245138 -278948526 - FRAM SINE Alu -16 160 1 355 231 58 49 chr1 3245143 3245321 -278948343 + L1MCa LINE L1 1898 6983 -1339 1738 157 0 4 chr1 3245352 3245620 -278948044 - AluJb SINE Alu -45 267 1 1095 242 57 75 chr1 3245624 3246409 -278947255 + MER34C-int LTR ERV1 2617 3387 -1549 * 4310 198 44 47 chr1 3246404 3247067 -278946597 + MER34C-int LTR ERV1 3558 4219 -717 1688 123 53 49 chr1 3247067 3247372 -278946292 + AluSx SINE Alu 1 306 0 4310 198 44 47 chr1 3247372 3247887 -278945777 + MER34C-int LTR ERV1 4219 4734 -202 425 155 0 0 chr1 3247972 3248042 -278945622 + MER34C LTR ERV1 3 72 -513 465 96 0 0 chr1 3248042 3248115 -278945549 + MER34C LTR ERV1 1 73 -512 * 472 72 0 0 chr1 3248082 3248151 -278945513 + MER34C LTR ERV1 5 73 -512 457 87 0 0 chr1 3248118 3248187 -278945477 + MER34C LTR ERV1 5 73 -512 * 442 116 0 0 chr1 3248154 3248222 -278945442 + MER34C LTR ERV1 5 72 -513 825 195 30 37 chr1 3248222 3248458 -278945206 + MER34C LTR ERV1 1 234 -351 232 250 23 45 chr1 3248695 3248783 -278944881 + LTR48 LTR ERV1 702 787 0 378 213 56 9 chr1 3249368 3249476 -278944188 - Charlie4a DNA MER1_type -3 505 393 1156 235 24 42 chr1 3249528 3249937 -278943727 + MLT1C LTR MaLR 60 461 -6 991 274 54 3 chr1 3249951 3250265 -278943399 - Charlie4a DNA MER1_type -149 359 30 657 302 19 0 chr1 3250407 3250612 -278943052 + MIR SINE MIR 52 260 -2 2446 47 7 0 chr1 3250854 3251151 -278942513 - AluY SINE Alu -12 299 1 2093 127 0 0 chr1 3251642 3251942 -278941722 - AluSx SINE Alu -12 300 1 625 281 89 13 chr1 3252398 3252633 -278941031 - MIR SINE MIR -6 256 4 2044 125 3 13 chr1 3252847 3253158 -278940506 - AluSx SINE Alu -4 308 1 226 246 16 41 chr1 3254484 3254606 -278939058 + (CGGG)n Simple_repeat Simple_repeat 4 122 0 210 176 0 0 chr1 3256535 3256586 -278937078 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 575 176 61 14 chr1 3256609 3256757 -278936907 - MER53 DNA DNA -15 174 20 23 33 0 0 chr1 3257166 3257196 -278936468 + GC_rich Low_complexity Low_complexity 1 30 0 844 148 104 0 chr1 3260479 3260661 -278933003 - Tigger7 DNA MER2_type -3 2484 2284 * 1093 218 30 11 chr1 3260660 3260922 -278932742 - Tigger7 DNA MER2_type -233 500 234 288 297 48 0 chr1 3261504 3261669 -278931995 + (CCGCG)n Simple_repeat Simple_repeat 4 176 0 224 317 50 0 chr1 3261592 3261753 -278931911 + (CACGT)n Simple_repeat Simple_repeat 1 169 0 * 2291 80 7 0 chr1 3264290 3264590 -278929074 - AluSp SINE Alu -11 302 1 352 340 89 38 chr1 3264590 3264815 -278928849 - L1 LINE L1 -1225 4921 4667 663 216 0 0 chr1 3264815 3264940 -278928724 - FLAM_A SINE Alu -8 125 1 352 340 89 38 chr1 3264940 3264993 -278928671 - L1 LINE L1 -1479 4667 4618 444 320 20 0 chr1 3265057 3265257 -278928407 - L1 LINE L1 -3732 2414 2211 513 376 82 9 chr1 3265311 3265654 -278928010 - L1ME1 LINE L1 -16 6150 5783 287 333 0 18 chr1 3268411 3268522 -278925142 - L1MC5 LINE L1 -173 7788 7680 1857 164 27 0 chr1 3269189 3269487 -278924177 - AluJb SINE Alu -6 306 1 2135 116 0 0 chr1 3271216 3271508 -278922156 - AluJb SINE Alu -20 292 1 253 223 184 10 chr1 3272369 3272472 -278921192 - L2 LINE L2 -14 3258 3138 256 157 0 0 chr1 3272570 3272621 -278921043 - L2 LINE L2 -337 2976 2926 273 375 50 0 chr1 3272960 3273080 -278920584 + L2 LINE L2 2626 2751 -563 27 0 0 0 chr1 3273599 3273626 -278920038 + GC_rich Low_complexity Low_complexity 1 27 0 308 268 154 8 chr1 3273993 3274116 -278919548 + MIR SINE MIR 31 171 -91 21 0 0 0 chr1 3276239 3276260 -278917404 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 3 10 chr1 3276897 3277206 -278916458 + AluSc SINE Alu 3 309 0 2230 103 0 6 chr1 3277316 3277628 -278916036 + AluSx SINE Alu 1 310 -2 1990 146 11 76 chr1 3277628 3277839 -278915825 + MER4D LTR ERV1 19 187 -716 2201 118 0 0 chr1 3277839 3278144 -278915520 + AluSx SINE Alu 1 305 -7 1990 146 11 76 chr1 3278144 3278378 -278915286 + MER4D LTR ERV1 187 435 -468 1069 55 0 0 chr1 3278424 3278552 -278915112 + AluSq/x SINE Alu 1 128 -184 1948 142 0 0 chr1 3278774 3279077 -278914587 + AluSx SINE Alu 1 303 0 23 0 0 0 chr1 3280497 3280520 -278913144 + GC_rich Low_complexity Low_complexity 1 23 0 299 342 40 13 chr1 3282224 3282449 -278911215 - L1M4 LINE L1 -832 5314 5084 2058 123 10 0 chr1 3282498 3282798 -278910866 + AluSp SINE Alu 1 303 -10 2153 32 4 0 chr1 3485772 3486020 -278707644 + L1PA3 LINE L1 5904 6152 -3 241 200 200 0 chr1 3486096 3486156 -278707508 - L2 LINE L2 -1 3312 3241 508 333 60 9 chr1 3487514 3487730 -278705934 - MIR SINE MIR -16 246 20 315 114 80 0 chr1 3487734 3487822 -278705842 + CT-rich Low_complexity Low_complexity 4 98 0 236 219 0 14 chr1 3487928 3488001 -278705663 + CT-rich Low_complexity Low_complexity 4 75 0 524 190 114 51 chr1 3489861 3490019 -278703645 + MIR SINE MIR 81 248 -14 487 191 6 6 chr1 3490588 3490761 -278702903 + (TG)n Simple_repeat Simple_repeat 2 174 0 195 146 0 0 chr1 3490788 3490829 -278702835 + (TG)n Simple_repeat Simple_repeat 2 42 0 416 233 16 0 chr1 3491189 3491318 -278702346 + GA-rich Low_complexity Low_complexity 1 131 0 1433 131 25 0 chr1 3492647 3492883 -278700781 - LTR19B LTR ERV1 0 580 339 488 355 0 22 chr1 3493826 3494009 -278699655 + (TG)n Simple_repeat Simple_repeat 2 180 0 258 317 96 54 chr1 3494156 3494323 -278699341 - MER5A DNA MER1_type -2 187 14 763 165 104 0 chr1 3494699 3494863 -278698801 + MER105 DNA DNA 17 197 -7 186 299 30 0 chr1 3495747 3495814 -278697850 + L2 LINE L2 3245 3313 0 616 257 196 47 chr1 3496196 3496558 -278697106 + MLT1J2 LTR MaLR 35 450 0 271 348 18 18 chr1 3496615 3496727 -278696937 + L2 LINE L2 2981 3092 -180 245 169 17 0 chr1 3496912 3496971 -278696693 + GA-rich Low_complexity Low_complexity 1 60 0 555 102 66 0 chr1 3497228 3497365 -278696299 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 644 108 52 8 chr1 3497495 3497747 -278695917 + (TCCA)n Simple_repeat Simple_repeat 1 263 0 680 108 67 0 chr1 3497912 3498355 -278695309 + (TCCA)n Simple_repeat Simple_repeat 1 472 0 1492 135 154 34 chr1 3498431 3498697 -278694967 + AluSg SINE Alu 1 298 -2 599 210 4 4 chr1 3498747 3498985 -278694679 + (TCTA)n Simple_repeat Simple_repeat 1 238 0 300 82 20 20 chr1 3498985 3499034 -278694630 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 213 121 0 0 chr1 3499034 3499067 -278694597 + (TC)n Simple_repeat Simple_repeat 2 34 0 483 63 0 0 chr1 3499073 3499136 -278694528 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 846 251 39 60 chr1 3499150 3499481 -278694183 + MLT1I LTR MaLR 84 407 -2 376 299 68 47 chr1 3499481 3499715 -278693949 - L1ME LINE L1 -530 5591 5353 3163 31 3 0 chr1 3501919 3502311 -278691353 - L1PA2 LINE L1 -429 5726 5334 4008 20 7 2 chr1 3502311 3502782 -278690882 + L1PA2 LINE L1 5693 6155 0 26 0 0 0 chr1 3502797 3502823 -278690841 + AT_rich Low_complexity Low_complexity 1 26 0 5284 140 17 10 chr1 3502849 3503886 -278689778 + L1PA16 LINE L1 5100 6150 -16 191 283 44 44 chr1 3504512 3504625 -278689039 + MIR SINE MIR 19 131 -77 306 129 0 0 chr1 3504781 3504843 -278688821 + (CTCA)n Simple_repeat Simple_repeat 2 63 0 278 258 10 93 chr1 3505086 3505183 -278688481 - L2 LINE L2 -16 3297 3209 1806 263 30 16 chr1 3505651 3506157 -278687507 - LTR40a LTR ERVL -3 516 4 265 308 26 13 chr1 3506158 3506236 -278687428 + MIR SINE MIR 93 171 -91 245 211 56 44 chr1 3508566 3508656 -278685008 + L1P LINE L1 606 696 -5450 251 361 50 0 chr1 3508925 3509044 -278684620 - MIR3 SINE MIR -7 201 77 1253 152 13 5 chr1 3509054 3509278 -278684386 + L1MA8 LINE L1 5596 5821 -479 1151 147 0 6 chr1 3509278 3509455 -278684209 + AluJb SINE Alu 41 216 -96 2155 131 38 0 chr1 3509455 3509799 -278683865 - THE1B LTR MaLR -2 362 6 473 69 14 0 chr1 3509786 3509858 -278683806 - MLT2A2 LTR ERVL -380 73 1 * 338 228 0 25 chr1 3509863 3509942 -278683722 + AluSp/q SINE Alu 226 302 -1 2757 143 11 19 chr1 3509943 3510413 -278683251 + L1MA8 LINE L1 5814 6279 -12 323 238 12 12 chr1 3510498 3510582 -278683082 + MER96 DNA MER1_type? 1 84 -91 1035 99 0 14 chr1 3510804 3510945 -278682719 + AluSq/x SINE Alu 1 139 -174 407 123 0 0 chr1 3510950 3511007 -278682657 + FAM SINE Alu 116 172 -13 321 26 0 0 chr1 3511007 3511045 -278682619 + (TA)n Simple_repeat Simple_repeat 2 39 0 751 171 0 23 chr1 3511052 3511181 -278682483 + FLAM_C SINE Alu 2 127 -16 920 310 103 13 chr1 3511218 3511605 -278682059 - MLT1K LTR MaLR -128 460 39 204 297 109 64 chr1 3512477 3512679 -278680985 + MIR SINE MIR 52 262 0 208 31 0 0 chr1 3512966 3512998 -278680666 - L2 LINE L2 -213 3059 3028 244 300 44 0 chr1 3513503 3513593 -278680071 + MIR SINE MIR 88 181 -81 192 327 70 26 chr1 3514535 3514691 -278678973 + MIR3 SINE MIR 30 192 -16 2016 108 0 0 chr1 3514787 3515064 -278678600 - AluSg SINE Alu -16 294 18 713 246 29 6 chr1 3516233 3516408 -278677256 + MER91A DNA MER1_type 18 196 0 1833 199 162 16 chr1 3516439 3516926 -278676738 + MER74A LTR ERVL 1 558 0 252 283 88 9 chr1 3517151 3517264 -278676400 + MIR SINE MIR 28 149 -113 1704 201 117 47 chr1 3517329 3517781 -278675883 + MLT1D LTR MaLR 22 505 0 455 311 111 5 chr1 3517801 3517991 -278675673 + MIR SINE MIR 3 212 -50 5587 88 18 16 chr1 3518015 3518849 -278674815 - L1PA11 LINE L1 -4 6170 5335 197 256 100 22 chr1 3518980 3519070 -278674594 - MIR3 SINE MIR -48 160 64 225 313 60 0 chr1 3520710 3520793 -278672871 - L2 LINE L2 -28 3244 3157 227 284 74 0 chr1 3521219 3521300 -278672364 + MIR3 SINE MIR 114 200 -8 228 274 17 17 chr1 3522304 3522386 -278671278 + MIR SINE MIR 5 86 -122 664 111 47 23 chr1 3522909 3523080 -278670584 + CT-rich Low_complexity Low_complexity 2 176 0 195 129 0 0 chr1 3523077 3523108 -278670556 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 * 550 331 68 51 chr1 3523159 3523573 -278670091 - MLT1K LTR MaLR 0 588 168 262 359 0 0 chr1 3525804 3525907 -278667757 + (TCCA)n Simple_repeat Simple_repeat 3 105 0 1895 220 111 5 chr1 3526000 3526422 -278667242 - MLT1C LTR MaLR 0 467 1 763 208 138 103 chr1 3526928 3527240 -278666424 - MLT1J LTR MaLR -181 330 8 448 231 35 42 chr1 3528632 3528775 -278664889 - MER5A DNA MER1_type -28 161 20 2428 84 0 0 chr1 3529485 3529796 -278663868 - AluY SINE Alu 0 311 1 2029 125 3 10 chr1 3529830 3530143 -278663521 - AluSx SINE Alu -1 311 1 615 299 71 8 chr1 3530340 3530594 -278663070 + L1MD2 LINE L1 5737 6006 -353 2001 140 50 13 chr1 3530385 3530729 -278662935 + L1MB3 LINE L1 5792 6153 -30 2492 81 3 0 chr1 3530729 3531036 -278662628 + AluSp SINE Alu 1 308 -5 2001 140 50 13 chr1 3531036 3531069 -278662595 + L1MB3 LINE L1 6153 6183 0 1483 259 42 18 chr1 3531295 3531844 -278661820 - L1M4 LINE L1 -891 5255 4694 369 0 0 0 chr1 3531844 3531885 -278661779 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 921 140 11 11 chr1 3531885 3532064 -278661600 + CT-rich Low_complexity Low_complexity 1 179 0 2168 126 17 0 chr1 3532074 3532375 -278661289 - AluSq SINE Alu -7 306 1 1120 171 0 0 chr1 3532433 3532609 -278661055 - AluSg/x SINE Alu -7 303 128 829 235 34 15 chr1 3532610 3532874 -278660790 - L1M4 LINE L1 -1504 4642 4374 596 171 0 0 chr1 3532879 3532984 -278660680 - L1MA9 LINE L1 -5 6307 6203 653 132 53 0 chr1 3532986 3533100 -278660564 + L1MA9 LINE L1 6096 6215 -97 * 2101 127 3 3 chr1 3533104 3533403 -278660261 - AluSq SINE Alu -14 299 1 1515 258 30 19 chr1 3533403 3533843 -278659821 - L1M4 LINE L1 -1759 4387 3936 1104 196 25 53 chr1 3533843 3534088 -278659576 - MER8 DNA MER2_type -1 238 1 1515 258 30 19 chr1 3534088 3534176 -278659488 - L1M4 LINE L1 -2210 3936 3850 232 192 0 19 chr1 3534247 3534299 -278659365 + MLT1E3 LTR MaLR 279 329 -295 208 379 93 6 chr1 3534881 3535042 -278658622 + MIR SINE MIR 56 230 -32 1019 74 0 0 chr1 3535573 3535694 -278657970 + AluSp SINE Alu 1 121 -192 1374 93 0 0 chr1 3535844 3536016 -278657648 + AluSp SINE Alu 132 303 -10 701 233 21 52 chr1 3536026 3536385 -278657279 - MLT1A1 LTR MaLR -42 323 1 8521 167 76 89 chr1 3536458 3537229 -278656435 - L1MC3 LINE L1 -7 7778 6998 338 97 0 81 chr1 3537229 3537291 -278656373 - Alu SINE Alu -4 298 242 8521 167 76 89 chr1 3537291 3537744 -278655920 - L1MC3 LINE L1 -787 6998 6540 577 25 25 0 chr1 3537744 3537823 -278655841 + (TCTA)n Simple_repeat Simple_repeat 2 82 0 8521 167 76 89 chr1 3537823 3538506 -278655158 - L1MC3 LINE L1 -1245 6540 5849 1454 151 9 22 chr1 3538506 3538738 -278654926 - AluJo SINE Alu -21 291 63 2323 121 0 0 chr1 3538746 3539052 -278654612 - AluSg SINE Alu -4 306 1 1831 156 7 14 chr1 3539054 3539342 -278654322 - AluJb SINE Alu -14 298 13 8521 167 76 89 chr1 3539342 3539742 -278653922 - L1MC3 LINE L1 -1944 5841 5428 198 236 0 0 chr1 3540436 3540491 -278653173 + (TG)n Simple_repeat Simple_repeat 1 55 0 269 264 0 0 chr1 3541082 3541135 -278652529 - L2 LINE L2 -5 3267 3215 699 213 101 43 chr1 3541967 3542174 -278651490 + MER20 DNA MER1_type 1 219 0 2018 82 32 3 chr1 3542320 3542602 -278651062 - L1PB1 LINE L1 -1 6150 5861 260 231 15 0 chr1 3542962 3543027 -278650637 - MLT1B LTR MaLR -6 384 319 649 229 246 7 chr1 3543029 3543309 -278650355 - MLT1B LTR MaLR -120 347 1 241 300 98 19 chr1 3544726 3544904 -278648760 - MIR SINE MIR -44 218 19 195 268 0 0 chr1 3544983 3545080 -278648584 + (CA)n Simple_repeat Simple_repeat 1 97 0 204 40 0 0 chr1 3545377 3545402 -278648262 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 288 0 0 0 chr1 3545401 3545433 -278648231 + (CA)n Simple_repeat Simple_repeat 1 32 0 320 251 49 80 chr1 3547286 3547449 -278646215 - MLT1I LTR MaLR -165 244 87 277 226 0 0 chr1 3547436 3547498 -278646166 - MLT1I LTR MaLR -261 148 87 * 363 293 60 0 chr1 3547485 3547618 -278646046 - MLT1I LTR MaLR -261 148 8 247 244 114 41 chr1 3548999 3549122 -278644542 - L2 LINE L2 0 3272 3141 372 225 22 0 chr1 3549336 3549425 -278644239 - MER5A DNA MER1_type -83 106 16 304 153 17 0 chr1 3551292 3551351 -278642313 - L1ME4a LINE L1 0 6121 6062 522 288 83 10 chr1 3551676 3551881 -278641783 - MIR SINE MIR -10 252 33 2420 198 44 49 chr1 3552018 3552633 -278641031 + MLT1E1 LTR MaLR 43 654 0 280 303 91 91 chr1 3553555 3553829 -278639835 + L2 LINE L2 2968 3241 -31 384 280 0 28 chr1 3553979 3554086 -278639578 - MIR3 SINE MIR -52 156 53 399 273 99 12 chr1 3554270 3554431 -278639233 - MER96 DNA MER1_type? 0 175 1 978 155 5 5 chr1 3554518 3555093 -278638571 + (TCCA)n Simple_repeat Simple_repeat 1 755 0 204 40 0 0 chr1 3555140 3555165 -278638499 + (CCTA)n Simple_repeat Simple_repeat 2 26 0 188 292 0 0 chr1 3555276 3555324 -278638340 + L2 LINE L2 2921 2968 -345 454 221 43 80 chr1 3556106 3556269 -278637395 + L2 LINE L2 3156 3312 -1 653 271 133 28 chr1 3556457 3556675 -278636989 + MIR SINE MIR 16 256 -6 5159 256 55 37 chr1 3557622 3558845 -278634819 + L1MEc LINE L1 234 1433 -4963 2259 119 0 3 chr1 3558845 3559156 -278634508 + AluSx SINE Alu 1 310 -2 5159 256 55 37 chr1 3559156 3559193 -278634471 + L1MEc LINE L1 1433 1468 -4928 2107 146 7 0 chr1 3559193 3559502 -278634162 + AluJb SINE Alu 1 311 -1 5159 256 55 37 chr1 3559502 3560003 -278633661 + L1MEc LINE L1 1468 2038 -4358 2438 148 25 39 chr1 3560003 3560050 -278633614 - MSTA LTR MaLR 0 428 382 2254 95 0 10 chr1 3560050 3560344 -278633320 + AluSc SINE Alu 1 291 -18 2438 148 25 39 chr1 3560344 3560728 -278632936 - MSTA LTR MaLR -46 382 3 5159 256 55 37 chr1 3560728 3560933 -278632731 + L1MEc LINE L1 2038 2238 -4158 255 230 126 46 chr1 3561618 3561705 -278631959 + L2 LINE L2 3175 3268 -4 1647 226 19 14 chr1 3561769 3562132 -278631532 - MLT1A1 LTR MaLR 0 365 1 229 233 10 68 chr1 3563181 3563284 -278630380 - L1ME4a LINE L1 -50 6071 5975 207 200 25 0 chr1 3563752 3563792 -278629872 - MER5A DNA MER1_type -134 55 15 2223 107 3 0 chr1 3564094 3564385 -278629279 - AluSp SINE Alu -21 292 1 2499 99 8 8 chr1 3564466 3564820 -278628844 - THE1A LTR MaLR 0 355 2 365 288 42 17 chr1 3564899 3565017 -278628647 + MIR3 SINE MIR 13 133 -75 300 234 31 26 chr1 3565293 3565410 -278628254 - LTR41 LTR ERVL 0 795 658 284 275 62 25 chr1 3566610 3566770 -278626894 - LTR41 LTR ERVL -607 166 1 670 172 0 14 chr1 3566999 3567144 -278626520 + GA-rich Low_complexity Low_complexity 2 144 0 2220 154 12 51 chr1 3567415 3567825 -278625839 + MSTD LTR MaLR 1 394 -2 377 329 51 0 chr1 3568546 3568683 -278624981 + MIR SINE MIR 15 158 -104 584 285 57 0 chr1 3568691 3568884 -278624780 - MIR SINE MIR -51 211 8 320 251 68 25 chr1 3569482 3569645 -278624019 - MLT1I LTR MaLR -16 393 224 2235 195 24 9 chr1 3570070 3570527 -278623137 - MLT1C LTR MaLR 0 467 4 274 282 15 0 chr1 3570789 3570869 -278622795 + MIR SINE MIR 36 116 -92 209 277 46 0 chr1 3571723 3571788 -278621876 - MIR SINE MIR -97 165 98 217 104 62 21 chr1 3572046 3572094 -278621570 + T-rich Low_complexity Low_complexity 3 52 0 2288 166 41 37 chr1 3573212 3573709 -278619955 - L1MC4a LINE L1 -484 5671 5177 187 31 62 0 chr1 3573709 3573741 -278619923 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6244 29 10 0 chr1 3573741 3574470 -278619194 - L1PA4 LINE L1 -16 6139 5404 2288 166 41 37 chr1 3574470 3574617 -278619047 - L1MC4a LINE L1 -755 5400 5255 234 91 0 0 chr1 3574669 3574702 -278618962 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 407 63 16 0 chr1 3575470 3575533 -278618131 + (TC)n Simple_repeat Simple_repeat 1 64 0 251 316 171 0 chr1 3576235 3576387 -278617277 + MIR SINE MIR 65 242 -20 498 315 118 5 chr1 3576535 3576738 -278616926 + MIR SINE MIR 32 257 -5 227 314 102 58 chr1 3577454 3577591 -278616073 - MIR SINE MIR -91 171 29 354 299 10 0 chr1 3578690 3578787 -278614877 - MIR SINE MIR -47 215 118 189 314 48 19 chr1 3578788 3578893 -278614771 + MIR SINE MIR 132 239 -23 277 289 0 31 chr1 3579198 3579295 -278614369 + L3 LINE CR1 583 676 -901 487 318 59 25 chr1 3579331 3579567 -278614097 - MIR SINE MIR -15 247 4 367 341 47 12 chr1 3579580 3579750 -278613914 + L3 LINE CR1 709 884 -693 927 230 15 0 chr1 3579978 3580182 -278613482 + MER58A DNA MER1_type 1 207 -17 183 314 0 43 chr1 3580607 3580677 -278612987 + L2 LINE L2 2294 2360 -954 1687 225 67 23 chr1 3580773 3581292 -278612372 - MER77 LTR ERV1 -10 595 54 184 279 73 15 chr1 3581330 3581398 -278612266 + L2 LINE L2 2907 2978 -335 207 313 12 0 chr1 3581806 3581889 -278611775 + L2 LINE L2 3202 3285 -28 2504 117 16 19 chr1 3582704 3583080 -278610584 - THE1C LTR MaLR 0 375 1 448 257 155 16 chr1 3584124 3584322 -278609342 - L1MC3 LINE L1 -10 7775 6096 1061 86 7 13 chr1 3585164 3585316 -278608348 - L1PA8 LINE L1 -3 6169 6019 23 54 0 0 chr1 3585334 3585371 -278608293 + AT_rich Low_complexity Low_complexity 1 37 0 487 160 191 0 chr1 3585382 3585513 -278608151 - Charlie5 DNA MER1_type -98 2514 2359 207 133 0 0 chr1 3585573 3585603 -278608061 + L2 LINE L2 3230 3259 -13 6879 61 14 2 chr1 3585716 3587054 -278606610 - L1PA7 LINE L1 -1 6153 4813 376 329 17 43 chr1 3587112 3587343 -278606321 + L1MD2 LINE L1 5535 5759 -2049 2084 129 99 40 chr1 3587343 3587702 -278605962 + MSTA LTR MaLR 1 388 -40 2089 108 47 0 chr1 3587702 3587998 -278605666 - AluSx SINE Alu -2 310 1 2084 129 99 40 chr1 3587998 3588042 -278605622 + MSTA LTR MaLR 388 428 0 443 261 0 0 chr1 3588549 3588572 -278605092 + L2 LINE L2 3198 3220 -93 2039 124 31 7 chr1 3588572 3588863 -278604801 - AluSx SINE Alu -14 298 1 443 261 0 0 chr1 3588863 3588931 -278604733 + L2 LINE L2 3219 3289 -24 188 235 0 0 chr1 3590351 3590385 -278603279 + L2 LINE L2 3165 3198 -74 1653 214 30 42 chr1 3590436 3590581 -278603083 - MLT1C LTR MaLR 0 467 322 3439 150 2 11 chr1 3590581 3591113 -278602551 + MER1A DNA MER1_type 1 527 0 1653 214 30 42 chr1 3591113 3591440 -278602224 - MLT1C LTR MaLR -145 322 1 238 388 10 0 chr1 3591617 3591715 -278601949 - MIR SINE MIR 0 262 164 220 269 93 46 chr1 3592495 3592603 -278601061 - L2 LINE L2 -1 3312 3200 307 263 34 34 chr1 3593976 3594094 -278599570 + L1MD2 LINE L1 6046 6163 -196 246 253 0 0 chr1 3594169 3594268 -278599396 + (CA)n Simple_repeat Simple_repeat 2 100 0 354 269 0 0 chr1 3594286 3594507 -278599157 + (CA)n Simple_repeat Simple_repeat 1 221 0 264 275 0 0 chr1 3594542 3594702 -278598962 + (CA)n Simple_repeat Simple_repeat 1 160 0 306 269 0 0 chr1 3594730 3594886 -278598778 + (CA)n Simple_repeat Simple_repeat 1 156 0 231 173 0 0 chr1 3594918 3594970 -278598694 + (CA)n Simple_repeat Simple_repeat 1 52 0 404 297 36 18 chr1 3594994 3595213 -278598451 + L1MD2 LINE L1 6132 6354 -5 28 71 0 0 chr1 3595273 3595329 -278598335 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr1 3595399 3595421 -278598243 + AT_rich Low_complexity Low_complexity 1 22 0 2229 100 0 21 chr1 3596820 3597398 -278596266 - L1PA10 LINE L1 -595 5573 5011 4330 86 26 0 chr1 3597398 3597973 -278595691 + L1PA10 LINE L1 5558 6157 -11 197 397 44 7 chr1 3598051 3598187 -278595477 + L3 LINE CR1 1000 1140 -437 228 333 152 24 chr1 3598292 3598457 -278595207 + L3 LINE CR1 1335 1520 -57 519 306 16 0 chr1 3599896 3600017 -278593647 - L2 LINE L2 0 3313 3191 295 183 0 0 chr1 3600863 3600923 -278592741 - L1MA10 LINE L1 -7 6327 6268 1864 158 25 51 chr1 3600924 3601317 -278592347 + MLT1B LTR MaLR 8 390 0 3198 223 33 61 chr1 3601317 3602856 -278590808 - L1ME1 LINE L1 -97 6138 4664 2279 112 0 10 chr1 3602856 3603159 -278590505 - AluSx SINE Alu -12 300 1 3198 223 33 61 chr1 3603159 3603445 -278590219 - L1ME1 LINE L1 -1571 4664 4372 240 263 0 0 chr1 3603454 3603511 -278590153 - L1ME1 LINE L1 -1817 4398 4342 * 811 218 45 30 chr1 3603509 3603775 -278589889 - L1ME1 LINE L1 -2828 3387 3118 1239 279 79 22 chr1 3603780 3604274 -278589390 - L1ME1 LINE L1 -5754 642 121 597 143 50 99 chr1 3604301 3604462 -278589202 + MLT2B1 LTR ERVL 366 518 -2 230 308 0 0 chr1 3604469 3604534 -278589130 - L1ME1 LINE L1 -6295 101 37 186 43 0 0 chr1 3605709 3605732 -278587932 + (CA)n Simple_repeat Simple_repeat 2 24 0 367 326 116 6 chr1 3606031 3606203 -278587461 + L1ME4a LINE L1 5695 5885 -236 2015 96 0 0 chr1 3606831 3607080 -278586584 - AluSx SINE Alu -63 249 1 720 261 97 13 chr1 3608328 3608566 -278585098 + L2 LINE L2 2501 2758 -556 2745 145 11 11 chr1 3608606 3609082 -278584582 + MER31A LTR ERV1 2 477 -8 1233 238 80 28 chr1 3609078 3609478 -278584186 + MLT1C LTR MaLR 45 465 -2 * 325 357 36 11 chr1 3609480 3609805 -278583859 + L2 LINE L2 2752 3082 -231 200 321 160 11 chr1 3611666 3611853 -278581811 + L2 LINE L2 2285 2499 -815 2271 129 0 0 chr1 3613716 3614027 -278579637 - AluSx SINE Alu -1 311 1 3237 191 34 26 chr1 3614739 3615195 -278578469 + L1MB7 LINE L1 5442 5908 -276 2223 206 15 23 chr1 3615195 3615666 -278577998 - MLT1C LTR MaLR 0 467 1 3237 191 34 26 chr1 3615666 3615936 -278577728 + L1MB7 LINE L1 5908 6174 -10 2141 243 42 41 chr1 3617234 3618133 -278575531 + L1ME LINE L1 2472 3371 -2775 824 236 49 12 chr1 3618146 3618160 -278575504 + L1ME LINE L1 5263 5275 -891 2158 136 0 0 chr1 3618160 3618455 -278575209 - AluSx SINE Alu -17 295 1 824 236 49 12 chr1 3618455 3618686 -278574978 + L1ME LINE L1 5275 5517 -649 702 90 0 10 chr1 3618720 3618820 -278574844 - L1PA5 LINE L1 -8 6146 6048 2279 241 76 17 chr1 3618821 3619152 -278574512 + L1MEc LINE L1 2020 2330 -3885 225 0 0 0 chr1 3619152 3619177 -278574487 + (TG)n Simple_repeat Simple_repeat 2 26 0 2279 241 76 17 chr1 3619177 3619883 -278573781 + L1MEc LINE L1 2330 3063 -3152 414 30 0 30 chr1 3620687 3620754 -278572910 + AluSp/q SINE Alu 243 307 -6 1609 261 35 23 chr1 3621013 3621542 -278572122 - L1M4 LINE L1 -891 5255 4734 735 62 0 0 chr1 3621542 3621639 -278572025 + (TTCC)n Simple_repeat Simple_repeat 1 97 0 1088 79 22 11 chr1 3621639 3621817 -278571847 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2163 130 17 0 chr1 3621827 3622128 -278571536 - AluSq SINE Alu -7 306 1 1609 261 35 23 chr1 3622128 3622187 -278571477 - L1M4 LINE L1 -1420 4726 4648 1145 165 0 0 chr1 3622187 3622363 -278571301 - AluSg/x SINE Alu -7 305 130 837 231 34 15 chr1 3622364 3622628 -278571036 - L1M4 LINE L1 -1504 4642 4374 596 171 0 0 chr1 3622633 3622738 -278570926 - L1MA9 LINE L1 -5 6307 6203 653 132 53 0 chr1 3622740 3622854 -278570810 + L1MA9 LINE L1 6096 6215 -97 * 2110 127 3 3 chr1 3622858 3623158 -278570506 - AluSq SINE Alu -13 300 1 1515 258 30 19 chr1 3623158 3623598 -278570066 - L1M4 LINE L1 -1759 4387 3936 1104 196 25 53 chr1 3623598 3623843 -278569821 - MER8 DNA MER2_type -1 238 1 1515 258 30 19 chr1 3623843 3623931 -278569733 - L1M4 LINE L1 -2210 3936 3850 232 192 0 19 chr1 3624002 3624054 -278569610 + MLT1E3 LTR MaLR 279 329 -295 208 379 93 6 chr1 3624636 3624797 -278568867 + MIR SINE MIR 56 230 -32 1019 74 0 0 chr1 3625328 3625449 -278568215 + AluSp SINE Alu 1 121 -192 1382 92 0 0 chr1 3625599 3625772 -278567892 + AluSp SINE Alu 132 304 -9 701 233 21 52 chr1 3625782 3626141 -278567523 - MLT1A1 LTR MaLR -42 323 1 8551 167 76 88 chr1 3626214 3626985 -278566679 - L1MC3 LINE L1 -7 7778 7000 338 97 0 81 chr1 3626985 3627047 -278566617 - Alu SINE Alu -4 298 242 8551 167 76 88 chr1 3627047 3627500 -278566164 - L1MC3 LINE L1 -785 7000 6543 505 28 28 0 chr1 3627500 3627571 -278566093 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 8551 167 76 88 chr1 3627571 3628254 -278565410 - L1MC3 LINE L1 -1242 6543 5854 1454 151 9 22 chr1 3628254 3628486 -278565178 - AluJo SINE Alu -21 291 63 2281 123 3 0 chr1 3628489 3628798 -278564866 - AluSg SINE Alu 0 310 1 1831 156 7 14 chr1 3628800 3629088 -278564576 - AluJb SINE Alu -14 298 13 8551 167 76 88 chr1 3629088 3629488 -278564176 - L1MC3 LINE L1 -1934 5851 5428 198 236 0 0 chr1 3630182 3630237 -278563427 + (TG)n Simple_repeat Simple_repeat 1 55 0 269 264 0 0 chr1 3630828 3630881 -278562783 - L2 LINE L2 -5 3267 3215 699 213 101 43 chr1 3631713 3631920 -278561744 + MER20 DNA MER1_type 1 219 0 2018 82 32 3 chr1 3632066 3632348 -278561316 - L1PB1 LINE L1 -1 6150 5861 260 231 15 0 chr1 3632707 3632772 -278560892 - MLT1B LTR MaLR -6 384 319 626 232 246 7 chr1 3632774 3633054 -278560610 - MLT1B LTR MaLR -120 347 1 259 292 98 19 chr1 3634471 3634649 -278559015 - MIR SINE MIR -44 218 19 195 268 0 0 chr1 3634728 3634825 -278558839 + (CA)n Simple_repeat Simple_repeat 1 97 0 198 0 0 0 chr1 3635122 3635144 -278558520 + (TC)n Simple_repeat Simple_repeat 2 23 0 315 0 0 0 chr1 3635145 3635180 -278558484 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 251 49 80 chr1 3637033 3637196 -278556468 - MLT1I LTR MaLR -165 244 87 277 226 0 0 chr1 3637183 3637245 -278556419 - MLT1I LTR MaLR -261 148 87 * 363 293 60 0 chr1 3637232 3637365 -278556299 - MLT1I LTR MaLR -261 148 8 247 244 114 41 chr1 3638746 3638869 -278554795 - L2 LINE L2 0 3272 3141 372 225 22 0 chr1 3639083 3639172 -278554492 - MER5A DNA MER1_type -83 106 16 304 153 17 0 chr1 3641039 3641098 -278552566 - L1ME4a LINE L1 0 6121 6062 505 293 83 10 chr1 3641423 3641628 -278552036 - MIR SINE MIR -10 252 33 2387 202 44 49 chr1 3641765 3642380 -278551284 + MLT1E1 LTR MaLR 43 654 0 280 303 91 91 chr1 3643302 3643576 -278550088 + L2 LINE L2 2968 3241 -31 384 280 0 28 chr1 3643726 3643833 -278549831 - MIR3 SINE MIR -52 156 53 374 284 93 12 chr1 3644017 3644179 -278549485 - MER96 DNA MER1_type? 0 175 1 999 152 5 5 chr1 3644266 3644841 -278548823 + (TCCA)n Simple_repeat Simple_repeat 1 755 0 204 40 0 0 chr1 3644888 3644913 -278548751 + (CCTA)n Simple_repeat Simple_repeat 2 26 0 188 292 0 0 chr1 3645024 3645072 -278548592 + L2 LINE L2 2921 2968 -345 454 221 43 80 chr1 3645854 3646017 -278547647 + L2 LINE L2 3156 3312 -1 653 271 133 28 chr1 3646205 3646423 -278547241 + MIR SINE MIR 16 256 -6 5048 254 55 46 chr1 3647370 3648593 -278545071 + L1MEc LINE L1 234 1444 -4952 2255 122 0 3 chr1 3648593 3648905 -278544759 + AluSx SINE Alu 1 311 -1 5048 254 55 46 chr1 3648905 3648942 -278544722 + L1MEc LINE L1 1444 1479 -4917 2178 136 7 0 chr1 3648942 3649252 -278544412 + AluJb SINE Alu 1 312 0 5048 254 55 46 chr1 3649252 3649771 -278543893 + L1MEc LINE L1 1479 2036 -4360 2438 148 25 39 chr1 3649771 3649818 -278543846 - MSTA LTR MaLR 0 428 382 2292 92 0 10 chr1 3649818 3650113 -278543551 + AluSc SINE Alu 1 292 -17 2438 148 25 39 chr1 3650113 3650497 -278543167 - MSTA LTR MaLR -46 382 3 5048 254 55 46 chr1 3650497 3650702 -278542962 + L1MEc LINE L1 2036 2238 -4158 255 230 126 46 chr1 3651387 3651474 -278542190 + L2 LINE L2 3175 3268 -4 1647 226 19 14 chr1 3651538 3651901 -278541763 - MLT1A1 LTR MaLR 0 365 1 229 233 10 68 chr1 3652950 3653053 -278540611 - L1ME4a LINE L1 -50 6071 5975 207 200 25 0 chr1 3653521 3653561 -278540103 - MER5A DNA MER1_type -134 55 15 2200 110 3 0 chr1 3653863 3654154 -278539510 - AluSp SINE Alu -21 292 1 2529 93 8 8 chr1 3654234 3654588 -278539076 - THE1A LTR MaLR 0 355 2 378 294 34 17 chr1 3654667 3654786 -278538878 + MIR3 SINE MIR 13 133 -75 300 234 31 26 chr1 3655062 3655179 -278538485 - LTR41 LTR ERVL 0 795 658 284 275 62 25 chr1 3656313 3656473 -278537191 - LTR41 LTR ERVL -607 166 1 2368 113 0 0 chr1 3656632 3656934 -278536730 - AluSx SINE Alu -10 302 1 497 263 65 50 chr1 3656958 3657160 -278536504 + MLT1I LTR MaLR 128 337 -72 2117 122 0 39 chr1 3657160 3657472 -278536192 + AluY SINE Alu 1 300 -11 497 263 65 50 chr1 3657472 3657547 -278536117 + MLT1I LTR MaLR 337 409 0 528 249 61 36 chr1 3657547 3657712 -278535952 - MIR SINE MIR -67 195 27 213 236 125 0 chr1 3658047 3658119 -278535545 - L2 LINE L2 -3 3269 3189 415 280 143 6 chr1 3659155 3659330 -278534334 + MIR SINE MIR 48 246 -16 1618 268 36 4 chr1 3661636 3662189 -278531475 + L1ME2 LINE L1 3063 3633 -2513 618 245 108 51 chr1 3662189 3662503 -278531161 + L1ME2 LINE L1 4715 5046 -1100 931 210 11 0 chr1 3662526 3662712 -278530952 + MER3 DNA MER1_type 22 209 0 2375 238 71 7 chr1 3662712 3663672 -278529992 + L1ME2 LINE L1 5036 6060 -104 2325 158 40 37 chr1 3663791 3664221 -278529443 + Tigger2a DNA MER2_type 3 433 -1 282 217 22 3 chr1 3664221 3664307 -278529357 + L1ME2 LINE L1 6075 6163 -1 2127 113 3 0 chr1 3664342 3664661 -278529003 + AluSx SINE Alu 1 320 0 33 43 0 0 chr1 3664849 3664896 -278528768 + AT_rich Low_complexity Low_complexity 1 47 0 598 281 52 60 chr1 3665099 3665566 -278528098 + L1MC5 LINE L1 6481 6984 -824 592 89 0 40 chr1 3665608 3665732 -278527932 + (GA)n Simple_repeat Simple_repeat 1 119 0 373 336 74 41 chr1 3665732 3666071 -278527593 + L1MEd LINE L1 841 1190 -4929 795 92 0 49 chr1 3666098 3666283 -278527381 + (GA)n Simple_repeat Simple_repeat 1 176 0 189 135 10 67 chr1 3666284 3666388 -278527276 + GA-rich Low_complexity Low_complexity 1 98 0 688 95 0 58 chr1 3666391 3666580 -278527084 + (GA)n Simple_repeat Simple_repeat 1 178 0 334 300 105 25 chr1 3666588 3666820 -278526844 + L1MEd LINE L1 974 1181 -4938 288 235 133 15 chr1 3666868 3667064 -278526600 + L1MC5 LINE L1 7003 7221 -740 366 258 0 11 chr1 3667064 3667153 -278526511 - MIR SINE MIR -138 124 37 2314 105 55 22 chr1 3667170 3667533 -278526131 + THE1C LTR MaLR 1 375 0 256 148 0 49 chr1 3667685 3667746 -278525918 + L1MC5 LINE L1 7856 7913 -48 275 343 0 12 chr1 3668185 3668357 -278525307 + (CACCC)n Simple_repeat Simple_repeat 3 172 0 234 91 0 0 chr1 3669129 3669162 -278524502 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2635 30 0 3 chr1 3669900 3670196 -278523468 + AluY SINE Alu 6 300 -11 673 258 104 69 chr1 3670913 3671433 -278522231 + MER115 DNA AcHobo 107 692 -1 1080 239 90 35 chr1 3672763 3673131 -278520533 + MLT1B LTR MaLR 1 388 -2 2297 91 3 13 chr1 3673652 3673960 -278519704 - AluY SINE Alu -6 305 1 1201 227 103 53 chr1 3674320 3674678 -278518986 - MLT1D LTR MaLR -8 497 112 1497 128 0 68 chr1 3674678 3674913 -278518751 - AluJb SINE Alu -9 303 85 1201 227 103 53 chr1 3674913 3674990 -278518674 - MLT1D LTR MaLR -393 112 40 379 283 142 19 chr1 3675251 3675456 -278518208 + MIR SINE MIR 21 250 -12 1916 180 43 53 chr1 3677237 3677345 -278516319 - MLT1D LTR MaLR 0 505 397 2351 112 7 0 chr1 3677345 3677650 -278516014 + AluSq SINE Alu 1 307 -6 1916 180 43 53 chr1 3677650 3678031 -278515633 - MLT1D LTR MaLR -108 397 21 402 115 0 0 chr1 3678074 3678135 -278515529 + (TG)n Simple_repeat Simple_repeat 2 62 0 433 303 26 41 chr1 3678167 3678362 -278515302 - MIR SINE MIR -58 204 13 2345 110 3 3 chr1 3678409 3678717 -278514947 + AluSx SINE Alu 1 308 -4 11357 173 42 22 chr1 3678963 3681573 -278512091 - L1 LINE L1 -1132 5014 2353 1403 184 42 84 chr1 3682710 3683091 -278510573 - MLT1A1 LTR MaLR 0 365 1 360 293 202 16 chr1 3683261 3683514 -278510150 + L2 LINE L2 2135 2434 -880 368 351 189 7 chr1 3683790 3684235 -278509429 + L2 LINE L2 2389 2914 -400 241 258 67 22 chr1 3684215 3684304 -278509360 + L2 LINE L2 3180 3272 0 * 2088 121 10 0 chr1 3684980 3685277 -278508387 + AluSx SINE Alu 1 300 -12 2238 127 116 10 chr1 3685309 3685696 -278507968 + MSTA LTR MaLR 1 428 0 2397 93 3 10 chr1 3686017 3686328 -278507336 - AluSc SINE Alu 0 309 1 362 238 67 19 chr1 3686707 3686812 -278506852 - MLT1J LTR MaLR -293 218 109 1749 172 19 94 chr1 3687098 3687522 -278506142 - MSTD LTR MaLR -4 392 1 207 0 0 0 chr1 3687704 3687727 -278505937 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 871 269 46 48 chr1 3688291 3688708 -278504956 - MLT1C LTR MaLR 0 467 52 297 219 0 0 chr1 3688957 3689030 -278504634 + (CA)n Simple_repeat Simple_repeat 1 73 0 384 287 169 30 chr1 3689430 3689796 -278503868 + HERVL LTR ERVL 1724 2140 -3514 703 278 47 0 chr1 3690087 3690256 -278503408 - MIR SINE MIR -53 209 33 1315 110 33 49 chr1 3690289 3690534 -278503130 + THE1C LTR MaLR 1 241 -134 504 48 0 0 chr1 3690534 3690597 -278503067 + THE1A LTR MaLR 1 63 -292 1887 82 59 0 chr1 3690855 3691125 -278502539 + THE1A LTR MaLR 70 355 0 995 101 2 0 chr1 3691125 3691270 -278502394 + THE1C LTR MaLR 237 375 0 272 238 0 10 chr1 3691639 3691740 -278501924 + GA-rich Low_complexity Low_complexity 1 100 0 448 186 4 18 chr1 3691759 3691980 -278501684 + GA-rich Low_complexity Low_complexity 1 218 0 318 143 0 0 chr1 3691987 3692050 -278501614 + (CA)n Simple_repeat Simple_repeat 2 64 0 2862 160 4 8 chr1 3692111 3692606 -278501058 + THE1-int LTR MaLR 891 1383 -197 439 218 224 36 chr1 3693455 3693622 -278500042 - MIR SINE MIR -63 145 4 621 322 108 43 chr1 3694729 3695512 -278498152 - L2 LINE L2 -2 3311 2580 4077 201 21 61 chr1 3695512 3696522 -278497142 + LTR5 LTR ERVK 1 969 0 621 322 108 43 chr1 3696522 3696540 -278497124 - L2 LINE L2 -733 2580 2565 2324 110 7 0 chr1 3696540 3696850 -278496814 + AluSx SINE Alu 1 312 0 621 322 108 43 chr1 3696850 3697000 -278496664 - L2 LINE L2 -748 2565 2300 2509 113 108 5 chr1 3697236 3697624 -278496040 - MSTA LTR MaLR 0 428 1 738 257 153 48 chr1 3697839 3698565 -278495099 - LTR1 LTR ERV1 0 826 28 347 291 35 57 chr1 3699204 3699345 -278494319 - L1ME4a LINE L1 0 6121 5984 1124 280 118 50 chr1 3699427 3700544 -278493120 + L1ME LINE L1 3337 4529 -1617 395 312 14 7 chr1 3700975 3701116 -278492548 + L1P5 LINE L1 5315 5456 -698 451 243 117 41 chr1 3701530 3701833 -278491831 + L1ME LINE L1 5483 5802 -360 2446 133 53 2 chr1 3701867 3702266 -278491398 - MSTA LTR MaLR 0 428 10 25 31 0 0 chr1 3702491 3702523 -278491141 + AT_rich Low_complexity Low_complexity 1 32 0 310 263 127 36 chr1 3703415 3703621 -278490043 - MIR SINE MIR -4 258 21 497 322 28 6 chr1 3703718 3703895 -278489769 + MIR SINE MIR 23 203 -59 420 330 35 20 chr1 3703969 3704172 -278489492 + MIR SINE MIR 20 225 -37 254 232 11 53 chr1 3705143 3705238 -278488426 + MIR SINE MIR 40 130 -132 426 219 36 36 chr1 3706580 3706734 -278486930 - L1ME2 LINE L1 -3 6232 6076 827 105 0 0 chr1 3706734 3706848 -278486816 - AluSg/x SINE Alu 0 309 196 6198 171 20 9 chr1 3706848 3708030 -278485634 + MSTA-int LTR MaLR 443 1651 0 2425 145 57 5 chr1 3708030 3708234 -278485430 + MSTA LTR MaLR 1 193 -235 243 0 0 0 chr1 3708234 3708261 -278485403 + (CCA)n Simple_repeat Simple_repeat 1 27 0 2425 145 57 5 chr1 3708261 3708463 -278485201 + MSTA LTR MaLR 193 428 0 2080 211 37 8 chr1 3708463 3708919 -278484745 - MER54A LTR ERVL -204 697 25 1710 215 78 82 chr1 3708941 3709706 -278483958 - L1ME2 LINE L1 -201 6030 5272 1965 256 28 50 chr1 3709708 3710353 -278483311 + L1ME1 LINE L1 5531 6161 -5 576 223 27 0 chr1 3710375 3710523 -278483141 - L1ME2 LINE L1 -1720 4495 4344 443 301 43 11 chr1 3710518 3710704 -278482960 - L1ME2 LINE L1 -4451 1945 1754 * 1403 277 133 63 chr1 3710720 3712057 -278481607 - L1ME2 LINE L1 -4740 1656 199 2547 57 6 25 chr1 3712057 3712374 -278481290 + AluY SINE Alu 1 311 0 1403 277 133 63 chr1 3712374 3712550 -278481114 - L1ME2 LINE L1 -6197 199 37 314 250 143 57 chr1 3712551 3712731 -278480933 + MIR SINE MIR 42 231 -31 247 308 56 28 chr1 3713015 3713122 -278480542 + L2 LINE L2 3196 3305 -8 938 206 58 84 chr1 3714391 3714468 -278479196 + MLT1D LTR MaLR 1 78 -427 2795 183 14 19 chr1 3714468 3714983 -278478681 + MLT2B2 LTR ERVL 1 512 -3 938 206 58 84 chr1 3714983 3715250 -278478414 + MLT1D LTR MaLR 78 336 -169 812 211 70 6 chr1 3715436 3715607 -278478057 + MLT1D LTR MaLR 324 505 0 2219 122 22 35 chr1 3716058 3716427 -278477237 + THE1B LTR MaLR 1 364 0 1115 156 0 0 chr1 3716518 3716698 -278476966 - L1MA1 LINE L1 0 6302 6123 224 288 12 6 chr1 3718042 3718161 -278475503 + MIR SINE MIR 110 229 -33 279 288 23 13 chr1 3718586 3718716 -278474948 - MIR SINE MIR -76 132 37 5864 186 29 20 chr1 3718858 3720302 -278473362 - L1MB3 LINE L1 -218 6201 4771 16463 141 23 16 chr1 3720302 3723002 -278470662 - Tigger2 DNA MER2_type 0 2718 1 5864 186 29 20 chr1 3723002 3725567 -278468097 - L1MB3 LINE L1 -1648 4771 994 2404 54 40 78 chr1 3725567 3725940 -278467724 - L1PA6 LINE L1 0 6154 5796 5864 186 29 20 chr1 3725940 3726941 -278466723 - L1MB3 LINE L1 -5425 994 3 6954 132 21 5 chr1 3727014 3728844 -278464820 - L1MA5 LINE L1 0 6300 4436 * 7928 191 12 4 chr1 3728827 3730427 -278463237 + L1 LINE L1 2235 3847 -2299 25 0 0 0 chr1 3730742 3730767 -278462897 + AT_rich Low_complexity Low_complexity 1 25 0 4213 123 41 8 chr1 3730794 3730938 -278462726 - L1MA6 LINE L1 0 6300 6162 2276 177 16 61 chr1 3730938 3731209 -278462455 + MER66B LTR ERV1 1 240 -246 1987 153 3 3 chr1 3731209 3731510 -278462154 + AluJb SINE Alu 9 309 -3 2276 177 16 61 chr1 3731510 3731747 -278461917 + MER66B LTR ERV1 240 486 0 4213 123 41 8 chr1 3731747 3732267 -278461397 - L1MA6 LINE L1 -138 6162 5614 200 162 0 0 chr1 3732584 3732621 -278461043 + L2 LINE L2 2941 2977 -336 314 224 61 41 chr1 3732796 3732894 -278460770 + L2 LINE L2 3211 3310 -3 1653 196 26 53 chr1 3733288 3733665 -278459999 - MLT1A2 LTR MaLR -7 367 1 408 263 99 29 chr1 3733673 3733844 -278459820 - MIR SINE MIR -48 214 32 1206 255 195 21 chr1 3734483 3735145 -278458519 + L2 LINE L2 1 777 -2537 578 260 143 11 chr1 3735199 3735599 -278458065 + MLT1F1 LTR MaLR 75 559 -8 324 182 0 15 chr1 3735611 3735677 -278457987 + MLT1F1-int LTR MaLR 5 69 -1302 201 227 171 0 chr1 3735680 3735768 -278457896 + L2 LINE L2 1255 1357 -1957 4188 101 3 0 chr1 3735925 3736499 -278457165 + LTR24B LTR ERV1 1 576 0 1220 281 85 47 chr1 3736837 3737332 -278456332 + MLT1G1 LTR MaLR 81 594 -1 2437 274 152 20 chr1 3737334 3738687 -278454977 + L2 LINE L2 773 2304 -1010 340 323 19 19 chr1 3738707 3738865 -278454799 + MER97c DNA MER1_type? 1 158 -932 2482 163 24 5 chr1 3738893 3739311 -278454353 - MSTA LTR MaLR 0 428 3 8571 155 65 37 chr1 3739313 3740919 -278452745 - MSTA-int LTR MaLR 0 1651 1 2861 119 24 5 chr1 3740919 3741339 -278452325 - MSTA LTR MaLR 0 428 1 463 312 183 10 chr1 3741345 3741842 -278451822 + L2 LINE L2 2360 2942 -372 251 308 47 47 chr1 3742304 3742476 -278451188 - MIR3 SINE MIR -15 193 22 213 207 138 35 chr1 3742738 3742825 -278450839 + L2 LINE L2 3177 3272 0 437 257 90 66 chr1 3744409 3744744 -278448920 - L1ME4a LINE L1 -1 6120 5778 192 248 124 29 chr1 3745123 3745228 -278448436 + MIR SINE MIR 29 143 -119 359 296 47 69 chr1 3745575 3745808 -278447856 - MLT1L LTR MaLR -33 582 355 2312 113 0 0 chr1 3746534 3746834 -278446830 - AluSg SINE Alu -9 301 2 276 261 8 75 chr1 3746912 3747046 -278446618 + MIR SINE MIR 10 134 -74 2156 132 0 3 chr1 3748041 3748352 -278445312 + AluSg SINE Alu 1 310 0 1517 176 13 33 chr1 3748792 3749056 -278444608 + MLT1B LTR MaLR 7 275 -115 2828 93 0 3 chr1 3749056 3749421 -278444243 + THE1B LTR MaLR 1 364 0 10656 102 25 40 chr1 3749421 3751026 -278442638 + THE1B-int LTR MaLR 1 1580 0 2670 113 3 3 chr1 3751026 3751390 -278442274 + THE1B LTR MaLR 1 364 0 1517 176 13 33 chr1 3751390 3751425 -278442239 + MLT1B LTR MaLR 272 302 -88 2369 146 54 10 chr1 3751473 3751878 -278441786 - MER83 LTR ERV1 -25 423 1 414 212 12 0 chr1 3751883 3751968 -278441696 + MLT1B LTR MaLR 305 390 0 1351 153 63 4 chr1 3752430 3752685 -278440979 - L1MA7 LINE L1 -1 6290 6021 548 278 9 52 chr1 3752743 3752973 -278440691 - L1MC5 LINE L1 -100 7861 7642 248 313 143 7 chr1 3753324 3753471 -278440193 - MER5B DNA MER1_type -6 172 6 441 0 0 0 chr1 3753529 3753578 -278440086 + (TG)n Simple_repeat Simple_repeat 2 50 0 505 309 98 5 chr1 3753815 3754009 -278439655 - MIR SINE MIR -4 258 47 2186 163 66 12 chr1 3754626 3755036 -278438628 + MSTB1 LTR MaLR 1 432 0 222 288 178 0 chr1 3755542 3755660 -278438004 - L2 LINE L2 0 3313 3175 198 286 163 32 chr1 3755786 3756038 -278437626 - L2 LINE L2 -558 2756 2472 241 254 18 0 chr1 3756877 3756932 -278436732 - LTR16B LTR ERVL 0 464 409 2251 211 33 21 chr1 3756974 3757485 -278436179 - MLT1E2 LTR MaLR -109 517 1 213 244 0 0 chr1 3757518 3757563 -278436101 - L2 LINE L2 -2 3311 3267 195 222 0 0 chr1 3757859 3757895 -278435769 - L3b LINE CR1 -17 1566 1531 282 179 0 0 chr1 3758424 3758480 -278435184 + CT-rich Low_complexity Low_complexity 1 56 0 321 312 263 0 chr1 3759317 3759522 -278434142 + MIR SINE MIR 3 261 -1 403 247 103 7 chr1 3760849 3760995 -278432669 - MER5A DNA MER1_type -29 160 1 526 250 60 24 chr1 3761006 3761174 -278432490 - MER5B DNA MER1_type -3 175 2 2006 197 50 10 chr1 3761617 3761849 -278431815 - MSTB LTR MaLR 0 426 170 1702 146 3 52 chr1 3761849 3762158 -278431506 - AluJb SINE Alu -18 294 1 2006 197 50 10 chr1 3762158 3762321 -278431343 - MSTB LTR MaLR -256 170 15 24 0 0 0 chr1 3764303 3764327 -278429337 + AT_rich Low_complexity Low_complexity 1 24 0 323 241 69 0 chr1 3764667 3764754 -278428910 - MLT1I LTR MaLR -2 407 315 849 221 10 28 chr1 3764795 3765105 -278428559 - MLT1A1 LTR MaLR 0 365 1 363 307 117 7 chr1 3765162 3765299 -278428365 - MLT1I LTR MaLR -191 218 67 2283 188 94 4 chr1 3766077 3766589 -278427075 - MER74A LTR ERVL 0 558 1 363 339 78 17 chr1 3767880 3768060 -278425604 - MIR SINE MIR -67 195 5 419 297 26 0 chr1 3769117 3769272 -278424392 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 699 225 0 0 chr1 3769302 3769471 -278424193 + (CA)n Simple_repeat Simple_repeat 1 169 0 2435 60 0 3 chr1 3769568 3769869 -278423795 - AluY SINE Alu -11 300 1 430 263 20 0 chr1 3770118 3770217 -278423447 + L2 LINE L2 3212 3312 -1 965 26 52 26 chr1 3770346 3770693 -278422971 + (TCTA)n Simple_repeat Simple_repeat 1 356 0 802 105 47 0 chr1 3770721 3770893 -278422771 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 375 367 6 6 chr1 3772039 3772216 -278421448 + (CA)n Simple_repeat Simple_repeat 1 177 0 1313 232 150 30 chr1 3772987 3773427 -278420237 + MLT1D LTR MaLR 13 505 0 2126 101 7 3 chr1 3777484 3777792 -278415872 - AluY SINE Alu -2 309 1 377 287 73 15 chr1 3777905 3778041 -278415623 + MER103 DNA DNA 2 145 -21 293 247 56 84 chr1 3778089 3778267 -278415397 + MER3 DNA MER1_type 32 204 -5 * 891 215 56 10 chr1 3778113 3778308 -278415356 - MER3 DNA MER1_type -5 204 1 389 299 52 61 chr1 3778453 3778684 -278414980 - MIR SINE MIR -3 259 31 356 276 26 9 chr1 3778737 3778853 -278414811 + MARNA DNA Mariner 311 428 -158 279 104 0 0 chr1 3779374 3779422 -278414242 + (TG)n Simple_repeat Simple_repeat 1 48 0 451 244 71 16 chr1 3779614 3779741 -278413923 + MER45B DNA AcHobo 4 137 -903 5179 106 3 4 chr1 3779741 3780518 -278413146 - L1PA13 LINE L1 -20 6143 5368 3453 213 44 7 chr1 3780518 3781273 -278412391 + MER45B DNA AcHobo 102 884 -156 276 203 0 0 chr1 3781321 3781380 -278412284 - MER45 DNA AcHobo -111 1470 1412 234 136 0 0 chr1 3781683 3781727 -278411937 + (TATG)n Simple_repeat Simple_repeat 3 46 0 676 145 22 17 chr1 3781734 3781913 -278411751 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 517 194 29 0 chr1 3781935 3782110 -278411554 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 525 262 0 21 chr1 3782131 3782272 -278411392 - L2 LINE L2 -14 3299 3162 284 238 38 86 chr1 3785414 3785519 -278408145 - MIR SINE MIR -157 105 6 299 371 74 25 chr1 3785546 3785829 -278407835 + L2 LINE L2 2976 3272 0 989 237 108 12 chr1 3786819 3787118 -278406546 + MLT1C LTR MaLR 6 355 -150 1965 122 91 28 chr1 3787126 3787478 -278406186 - THE1C LTR MaLR -1 374 1 503 242 53 52 chr1 3788274 3788580 -278405084 - MLT1H LTR MaLR -27 382 82 448 285 33 26 chr1 3789063 3789214 -278404450 + MIR SINE MIR 14 165 -97 242 279 99 36 chr1 3789576 3789687 -278403977 - MIR SINE MIR -73 135 18 215 308 205 8 chr1 3790398 3790515 -278403149 + MIR SINE MIR 42 181 -81 198 300 14 0 chr1 3790536 3790606 -278403058 + MIR SINE MIR 21 91 -171 210 37 0 0 chr1 3790978 3791005 -278402659 + (CAG)n Simple_repeat Simple_repeat 3 29 0 745 185 58 24 chr1 3791095 3791300 -278402364 - ORSL DNA AcHobo -20 255 44 254 198 26 129 chr1 3792651 3792767 -278400897 + L3 LINE CR1 1470 1573 -4 1428 209 102 40 chr1 3794384 3794805 -278398859 - MLT1C LTR MaLR 0 467 21 1926 81 0 0 chr1 3995503 3995751 -278197913 + AluY SINE Alu 63 310 -1 1487 178 33 49 chr1 3996572 3996600 -278197064 - AluJo SINE Alu -13 299 272 2146 105 3 7 chr1 3996600 3996904 -278196760 + AluSq SINE Alu 1 303 -10 1487 178 33 49 chr1 3996904 3997179 -278196485 - AluJo SINE Alu -40 272 1 594 283 88 26 chr1 3998562 3998788 -278194876 + MIR SINE MIR 2 241 -21 727 204 18 12 chr1 3999175 3999342 -278194322 - Charlie8 DNA MER1_type -2227 190 23 1721 154 0 11 chr1 4000217 4000502 -278193162 + AluJb SINE Alu 11 292 -20 21 0 0 0 chr1 4000502 4000523 -278193141 + AT_rich Low_complexity Low_complexity 1 21 0 264 252 96 96 chr1 4001710 4001845 -278191819 + L2 LINE L2 3134 3268 -4 393 296 69 20 chr1 4002220 4002467 -278191197 + L1ME3A LINE L1 5912 6170 0 41 36 0 0 chr1 4002997 4003052 -278190612 + GC_rich Low_complexity Low_complexity 1 55 0 21 82 0 0 chr1 4003071 4003120 -278190544 + GC_rich Low_complexity Low_complexity 1 49 0 265 255 40 13 chr1 4004144 4004239 -278189425 - MIR SINE MIR -62 146 88 509 303 35 7 chr1 4004477 4004674 -278188990 - MIR SINE MIR -24 238 33 474 234 123 47 chr1 4004734 4004905 -278188759 - MIR SINE MIR -69 193 10 1708 175 3 7 chr1 4005818 4005951 -278187713 + AluJb SINE Alu 1 133 -179 2397 96 0 0 chr1 4005951 4006263 -278187401 + AluSq SINE Alu 1 312 -1 1708 175 3 7 chr1 4006263 4006420 -278187244 + AluJb SINE Alu 133 290 -22 2105 110 0 14 chr1 4006422 4006714 -278186950 + AluSx SINE Alu 1 288 -24 447 301 63 42 chr1 4006725 4006964 -278186700 - MIR SINE MIR 0 262 19 336 286 98 0 chr1 4007004 4007116 -278186548 - L2 LINE L2 0 3313 3191 436 324 159 0 chr1 4007607 4007777 -278185887 + MIR SINE MIR 48 244 -18 280 355 48 18 chr1 4008161 4008327 -278185337 - MIR SINE MIR -3 259 89 489 297 207 8 chr1 4008377 4008633 -278185031 + L3 LINE CR1 1264 1570 -7 181 321 231 8 chr1 4010604 4010738 -278182926 - MIR3 SINE MIR -43 165 2 423 256 76 29 chr1 4012079 4012251 -278181413 + MIR SINE MIR 79 258 -4 508 344 111 26 chr1 4012485 4012910 -278180754 - L2 LINE L2 0 3313 2853 2061 134 3 7 chr1 4012983 4013290 -278180374 + AluSx SINE Alu 1 306 -6 411 106 0 0 chr1 4016412 4016478 -278177186 + (GGA)n Simple_repeat Simple_repeat 1 66 0 555 265 53 21 chr1 4016701 4016890 -278176774 + MER117 DNA MER1_type 3 197 0 2022 138 0 0 chr1 4018779 4019076 -278174588 - AluSx SINE Alu -15 297 1 205 283 104 38 chr1 4019088 4019194 -278174470 - MIR3 SINE MIR -49 159 47 24 53 0 0 chr1 4019341 4019379 -278174285 + GC_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr1 4019386 4019417 -278174247 + GC_rich Low_complexity Low_complexity 1 31 0 218 200 0 67 chr1 4020240 4020315 -278173349 + GA-rich Low_complexity Low_complexity 1 70 0 585 134 31 10 chr1 4021524 4021621 -278172043 + FRAM SINE Alu 63 161 -15 35 41 0 0 chr1 4021621 4021670 -278171994 + AT_rich Low_complexity Low_complexity 1 49 0 2412 84 0 0 chr1 4021836 4022147 -278171517 - AluY SINE Alu 0 311 1 589 216 24 24 chr1 4022147 4022264 -278171400 - L2 LINE L2 -5 3308 3189 201 338 27 68 chr1 4023075 4023223 -278170441 - L2 LINE L2 -56 3216 3075 458 223 16 0 chr1 4026050 4026172 -278167492 + MER33 DNA MER1_type 1 119 -97 1015 155 6 0 chr1 4026172 4026333 -278167331 - AluJb SINE Alu -16 296 135 2342 83 0 0 chr1 4026333 4026633 -278167031 - AluSx SINE Alu -12 300 1 2174 117 0 7 chr1 4026644 4026943 -278166721 - AluSx SINE Alu -15 297 1 2304 94 0 0 chr1 4027086 4027385 -278166279 + AluSq SINE Alu 1 299 -14 2066 108 14 0 chr1 4027385 4027672 -278165992 + AluSq SINE Alu 1 292 -21 837 179 7 0 chr1 4027672 4027812 -278165852 - FLAM_C SINE Alu -2 141 1 863 172 29 5 chr1 4027813 4028022 -278165642 + MER33 DNA MER1_type 111 324 0 1346 143 0 19 chr1 4030549 4030765 -278162899 - AluJo SINE Alu -16 296 85 1992 133 0 0 chr1 4031224 4031539 -278162125 + AluSx SINE Alu 3 317 0 502 303 143 6 chr1 4031568 4031743 -278161921 + MIR SINE MIR 49 247 -15 873 266 70 73 chr1 4032061 4032347 -278161317 - L2 LINE L2 -275 3038 2752 2137 103 3 10 chr1 4032347 4032649 -278161015 - AluSc SINE Alu -9 300 1 441 36 0 0 chr1 4032651 4032706 -278160958 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2029 76 36 4 chr1 4032706 4032981 -278160683 - AluSp SINE Alu -29 284 1 873 266 70 73 chr1 4032981 4033281 -278160383 - L2 LINE L2 -560 2753 2451 1793 123 27 41 chr1 4033288 4033580 -278160084 + AluJb SINE Alu 11 298 -14 225 206 0 73 chr1 4033584 4033652 -278160012 + L1MC4 LINE L1 7169 7231 -811 680 168 0 35 chr1 4033654 4033689 -278159975 - AluSx SINE Alu -144 168 133 2095 109 7 3 chr1 4033689 4033983 -278159681 - AluSx SINE Alu -16 296 2 680 168 0 35 chr1 4033983 4034060 -278159604 - AluSx SINE Alu -179 133 60 232 224 165 0 chr1 4034060 4034145 -278159519 + L1MC4 LINE L1 7234 7332 -710 460 299 226 6 chr1 4034189 4034320 -278159344 + L1MC4 LINE L1 7436 7537 -505 1817 159 10 3 chr1 4034320 4034615 -278159049 + AluJb SINE Alu 1 297 -15 460 299 226 6 chr1 4034615 4034645 -278159019 + L1MC4 LINE L1 7537 7559 -483 2602 45 0 0 chr1 4034645 4034955 -278158709 + AluY SINE Alu 1 310 -1 460 299 226 6 chr1 4034955 4035287 -278158377 + L1MC4 LINE L1 7559 8039 -3 2350 87 0 10 chr1 4035289 4035601 -278158063 + AluSx SINE Alu 3 311 -1 510 240 77 60 chr1 4035628 4035762 -278157902 - L2 LINE L2 -1481 1833 1703 1745 136 93 0 chr1 4035762 4036041 -278157623 + AluJb SINE Alu 1 305 -7 2190 101 0 13 chr1 4036047 4036355 -278157309 + AluSg SINE Alu 1 304 -6 510 240 77 60 chr1 4036355 4036446 -278157218 - L2 LINE L2 -1615 1699 1597 1185 153 5 0 chr1 4037292 4037481 -278156183 + AluJb SINE Alu 117 306 -6 220 303 40 13 chr1 4037575 4037651 -278156013 - MIR SINE MIR -79 183 106 2098 125 0 7 chr1 4037737 4038041 -278155623 + AluSx SINE Alu 1 302 -10 215 231 197 51 chr1 4041542 4041659 -278152005 - L2 LINE L2 -184 3088 2955 267 401 40 9 chr1 4042376 4042603 -278151061 + MIR SINE MIR 14 247 -15 238 245 101 57 chr1 4044036 4044195 -278149469 + L2 LINE L2 2941 3106 -166 219 191 11 149 chr1 4044332 4044392 -278149272 + L2 LINE L2 3191 3235 -37 2246 105 0 3 chr1 4044392 4044698 -278148966 + AluSx SINE Alu 1 305 -7 219 191 11 149 chr1 4044698 4044731 -278148933 + L2 LINE L2 3235 3271 -1 216 284 145 41 chr1 4044747 4044886 -278148778 - MIR SINE MIR -47 161 13 * 430 151 32 32 chr1 4044884 4044977 -278148687 + MER5A DNA MER1_type 14 106 -83 1694 83 0 13 chr1 4045162 4045392 -278148272 + AluSg/x SINE Alu 83 309 -1 221 294 0 33 chr1 4047178 4047270 -278146394 + GA-rich Low_complexity Low_complexity 2 90 0 208 200 46 0 chr1 4048198 4048263 -278145401 - MIR SINE MIR -86 122 55 210 150 0 0 chr1 4048588 4048628 -278145036 + (CGG)n Simple_repeat Simple_repeat 1 40 0 211 256 12 12 chr1 4048695 4048777 -278144887 + (CGGG)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr1 4050250 4050273 -278143391 + GC_rich Low_complexity Low_complexity 1 23 0 264 221 39 0 chr1 4051756 4051833 -278141831 + G-rich Low_complexity Low_complexity 5 84 0 183 80 0 0 chr1 4052465 4052490 -278141174 + (TG)n Simple_repeat Simple_repeat 1 25 0 262 214 274 8 chr1 4053163 4053280 -278140384 + MIR3 SINE MIR 45 192 -16 347 262 78 30 chr1 4054223 4054362 -278139302 + MIR SINE MIR 31 174 -34 2035 106 34 10 chr1 4054397 4054689 -278138975 - AluSq SINE Alu -14 299 1 2406 73 0 3 chr1 4054697 4054998 -278138666 - AluSc SINE Alu -9 300 1 2237 87 0 17 chr1 4054998 4055297 -278138367 - AluSc SINE Alu -15 294 1 203 368 23 0 chr1 4055313 4055400 -278138264 + MIR SINE MIR 173 261 -1 267 285 277 13 chr1 4055477 4055712 -278137952 - L3 LINE CR1 -1 1576 1280 206 253 32 0 chr1 4056408 4056472 -278137192 + MIR SINE MIR 103 145 -63 22 35 0 0 chr1 4056744 4056773 -278136891 + GC_rich Low_complexity Low_complexity 1 29 0 306 215 16 33 chr1 4057016 4057137 -278136527 + (CCCCG)n Simple_repeat Simple_repeat 2 120 0 2211 70 18 3 chr1 4057567 4057851 -278135813 - AluSg SINE Alu -20 290 3 200 298 58 87 chr1 4057977 4058185 -278135479 + L2 LINE L2 2976 3177 -95 496 209 58 68 chr1 4058191 4058382 -278135282 - MER53 DNA DNA 0 189 1 2182 128 0 0 chr1 4058450 4058756 -278134908 - AluSx SINE Alu -6 306 1 193 211 115 0 chr1 4058907 4058959 -278134705 - MIR SINE MIR -137 125 68 209 352 63 42 chr1 4059133 4059275 -278134389 + MIR SINE MIR 100 244 -18 180 243 0 0 chr1 4060436 4060473 -278133191 + MIR SINE MIR 218 254 -8 1597 173 0 7 chr1 4060796 4061110 -278132554 + AluJo SINE Alu 18 312 0 623 320 104 0 chr1 4061166 4061388 -278132276 - MIR SINE MIR -1 261 17 183 309 140 51 chr1 4061589 4061767 -278131897 + MIR SINE MIR 51 244 -18 181 332 138 37 chr1 4062575 4062843 -278130821 + L2 LINE L2 2874 3168 -145 188 291 89 25 chr1 4063044 4063123 -278130541 - MIR SINE MIR -89 119 36 2090 87 21 10 chr1 4063383 4063671 -278129993 + AluSx SINE Alu 1 291 -21 257 270 167 29 chr1 4063682 4063886 -278129778 - L2 LINE L2 -195 3118 2887 1128 148 0 0 chr1 4063959 4064128 -278129536 - AluSg/x SINE Alu -10 300 132 2112 126 0 3 chr1 4064129 4064423 -278129241 - AluSg SINE Alu -17 293 1 2325 91 0 3 chr1 4064436 4064744 -278128920 - AluSg SINE Alu -2 308 2 221 231 0 62 chr1 4065564 4065629 -278128035 - MIR SINE MIR -86 122 62 489 236 36 0 chr1 4065662 4065772 -278127892 + L2 LINE L2 3155 3268 -4 205 250 33 0 chr1 4065773 4065833 -278127831 + MIR SINE MIR 130 191 -71 2151 97 6 67 chr1 4065875 4066259 -278127405 - AluSx SINE Alu 0 364 1 1373 92 5 0 chr1 4066787 4066972 -278126692 - AluSp SINE Alu -3 310 125 216 0 0 0 chr1 4068467 4068491 -278125173 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 373 278 157 15 chr1 4071490 4071757 -278121907 + L2 LINE L2 2740 3046 -267 23 33 0 0 chr1 4072426 4072456 -278121208 + GC_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr1 4072852 4072878 -278120786 + (CCCCG)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr1 4072894 4072922 -278120742 + GC_rich Low_complexity Low_complexity 1 28 0 241 260 0 27 chr1 4073191 4073264 -278120400 - L2 LINE L2 -339 2975 2905 344 266 64 138 chr1 4074703 4074844 -278118820 - MIR SINE MIR -11 251 101 2474 74 3 0 chr1 4074844 4075154 -278118510 - AluY SINE Alu 0 311 1 2054 119 0 42 chr1 4075156 4075466 -278118198 - AluSq SINE Alu -16 297 1 344 266 64 138 chr1 4075466 4075524 -278118140 - MIR SINE MIR -162 100 64 231 344 0 21 chr1 4076330 4076426 -278117238 + MIR SINE MIR 158 251 -11 197 400 0 0 chr1 4077076 4077181 -278116483 + MIR SINE MIR 30 134 -74 180 0 0 0 chr1 4077606 4077626 -278116038 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 246 260 14 0 chr1 4078609 4078682 -278114982 + C-rich Low_complexity Low_complexity 2 75 0 2118 89 32 0 chr1 4079702 4079983 -278113681 + AluSx SINE Alu 1 290 -22 190 319 154 0 chr1 4080446 4080537 -278113127 + L2 LINE L2 3151 3255 -17 2171 110 3 0 chr1 4081508 4081809 -278111855 + AluSx SINE Alu 1 302 -10 933 168 19 47 chr1 4082153 4082367 -278111297 - Tigger1 DNA MER2_type -2210 208 1 1804 132 28 24 chr1 4082370 4082658 -278111006 - AluJo SINE Alu -23 289 1 180 179 0 0 chr1 4082806 4082845 -278110819 + (TG)n Simple_repeat Simple_repeat 2 40 0 2176 100 0 0 chr1 4083325 4083636 -278110028 + AluSg SINE Alu 1 311 0 1101 123 0 0 chr1 4083670 4083824 -278109840 + AluSq SINE Alu 3 156 -157 1970 145 3 0 chr1 4083833 4084123 -278109541 + AluSx SINE Alu 7 297 -15 303 238 132 17 chr1 4084124 4084251 -278109413 - MER69 DNA AcHobo 0 2526 2385 291 238 0 0 chr1 4084638 4084701 -278108963 - HERV16 LTR ERVL -2465 2531 2469 766 163 0 92 chr1 4084702 4084865 -278108799 + L1MB3 LINE L1 5966 6142 -41 2577 40 0 0 chr1 4084865 4085168 -278108496 + AluY SINE Alu 1 303 -8 1889 160 0 3 chr1 4085178 4085472 -278108192 + AluJo SINE Alu 1 293 -19 766 163 0 92 chr1 4085472 4085487 -278108177 + L1MB3 LINE L1 6151 6166 -17 2169 123 0 0 chr1 4085487 4085788 -278107876 - AluSq SINE Alu -12 301 1 766 163 0 92 chr1 4085788 4085836 -278107828 + L1MB3 LINE L1 6166 6182 -1 1806 263 141 3 chr1 4085857 4086587 -278107077 - HERV16 LTR ERVL -2536 2460 1630 2002 128 3 16 chr1 4086618 4086923 -278106741 + AluSx SINE Alu 1 301 -11 320 119 0 0 chr1 4087001 4087063 -278106601 - L1MA4 LINE L1 -120 6183 6119 1370 207 24 24 chr1 4087074 4087269 -278106395 - AluJo SINE Alu -1 311 114 2525 61 0 0 chr1 4087269 4087580 -278106084 + AluY SINE Alu 1 311 0 1370 207 24 24 chr1 4087580 4087679 -278105985 - AluJo SINE Alu -197 115 17 1720 164 31 0 chr1 4087757 4088049 -278105615 + AluJb SINE Alu 1 301 -11 1362 241 23 10 chr1 4088052 4088446 -278105218 + L1M4 LINE L1 2445 2843 -3303 672 172 78 0 chr1 4088448 4088564 -278105100 + AluSq SINE Alu 11 135 -177 1417 130 0 5 chr1 4088565 4088780 -278104884 + AluSq SINE Alu 95 308 -5 1184 131 11 0 chr1 4088805 4088988 -278104676 + AluSq SINE Alu 129 313 0 461 241 0 71 chr1 4088991 4089048 -278104616 + L1M4 LINE L1 2814 2873 -3273 2084 114 3 3 chr1 4089048 4089346 -278104318 - AluSp SINE Alu -15 298 1 461 241 0 71 chr1 4089346 4089500 -278104164 + L1M4 LINE L1 2873 3010 -3136 2152 103 3 3 chr1 4089500 4089792 -278103872 - AluSx SINE Alu -14 298 7 2292 94 7 0 chr1 4089847 4090154 -278103510 + AluSp SINE Alu 5 313 0 419 132 26 13 chr1 4090184 4090282 -278103382 + AluJ/FRAM SINE Alu 232 312 0 1060 129 0 2 chr1 4090288 4090544 -278103120 + AluSx SINE Alu 1 303 -9 642 238 86 0 chr1 4090546 4090815 -278102849 + L1M4 LINE L1 3052 3343 -2803 2004 122 3 35 chr1 4090818 4091129 -278102535 + AluSx SINE Alu 1 301 -11 2297 98 10 0 chr1 4091134 4091440 -278102224 + AluY SINE Alu 1 309 -2 253 271 0 0 chr1 4091461 4091531 -278102133 + L1ME3A LINE L1 5784 5853 -317 428 250 43 43 chr1 4091535 4091699 -278101965 + L1ME3A LINE L1 5971 6134 -36 287 226 0 0 chr1 4091763 4091816 -278101848 + L2 LINE L2 3208 3260 -12 730 304 26 7 chr1 4091859 4092103 -278101561 - MIR SINE MIR -13 249 3 2405 21 0 3 chr1 4092827 4093160 -278100504 - AluY SINE Alu 0 332 1 1935 148 0 13 chr1 4093466 4093769 -278099895 + AluJb SINE Alu 1 299 -13 2225 84 3 17 chr1 4093769 4094068 -278099596 + AluSp SINE Alu 1 295 -18 1408 145 161 0 chr1 4094095 4094350 -278099314 - AluJb SINE Alu -2 300 5 1772 156 0 34 chr1 4094849 4095026 -278098638 - AluJo SINE Alu -2 310 147 2235 73 0 33 chr1 4095026 4095328 -278098336 - AluY SINE Alu -13 298 7 1772 156 0 34 chr1 4095328 4095471 -278098193 - AluJo SINE Alu -165 147 1 1946 126 13 13 chr1 4095772 4096081 -278097583 + AluY SINE Alu 1 309 -2 932 126 0 0 chr1 4096416 4096559 -278097105 - AluSg/x SINE Alu 0 312 170 663 73 0 0 chr1 4096566 4096648 -278097016 - AluY SINE Alu -15 296 215 2402 76 0 0 chr1 4096706 4097010 -278096654 - AluY SINE Alu -7 304 1 1128 188 31 5 chr1 4097057 4097280 -278096384 + AluJb SINE Alu 1 229 -83 2043 121 3 0 chr1 4097280 4097569 -278096095 - AluSg SINE Alu -20 290 1 2373 76 0 0 chr1 4097599 4097900 -278095764 - AluY SINE Alu -10 301 1 1521 251 147 37 chr1 4098035 4098816 -278094848 - L2 LINE L2 -6 3307 2613 2119 121 0 0 chr1 4098816 4099121 -278094543 + AluSx SINE Alu 1 305 -7 1521 251 147 37 chr1 4099121 4099137 -278094527 - L2 LINE L2 -700 2613 2600 1707 141 52 21 chr1 4099137 4099428 -278094236 + AluJo SINE Alu 1 300 -12 1521 251 147 37 chr1 4099428 4099831 -278093833 - L2 LINE L2 -713 2600 1723 894 181 75 0 chr1 4100313 4100473 -278093191 - FAM SINE Alu -3 172 1 218 297 148 0 chr1 4100654 4100716 -278092948 - MIR SINE MIR -76 186 135 1790 171 0 16 chr1 4100716 4101032 -278092632 + AluJb SINE Alu 1 311 -1 218 297 148 0 chr1 4101032 4101070 -278092594 - MIR SINE MIR -127 135 71 850 97 0 0 chr1 4101178 4101291 -278092373 + AluSq/x SINE Alu 3 115 -198 4336 117 222 81 chr1 4101292 4102514 -278091150 + pTR5 LTR ERV1 276 2295 -143 817 217 18 24 chr1 4102535 4102693 -278090971 + FRAM SINE Alu 1 159 -143 2528 61 0 0 chr1 4102693 4103004 -278090660 + AluY SINE Alu 1 311 0 27 73 0 0 chr1 4104063 4104118 -278089546 + GC_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr1 4104458 4104492 -278089172 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 4104515 4104536 -278089128 + GC_rich Low_complexity Low_complexity 1 21 0 222 369 31 41 chr1 4105733 4105928 -278087736 - MIR SINE MIR -50 212 20 2120 96 0 23 chr1 4106067 4106369 -278087295 - AluSx SINE Alu -17 295 1 1529 82 0 0 chr1 4106377 4106572 -278087092 - AluSx SINE Alu -117 195 1 2171 89 7 0 chr1 4106627 4106932 -278086732 - AluSx SINE Alu 0 307 1 2147 113 0 3 chr1 4106996 4107297 -278086367 - AluSx SINE Alu -12 300 1 1395 113 39 18 chr1 4107782 4108011 -278085653 - AluSg/x SINE Alu -1 309 76 252 188 150 50 chr1 4108012 4108092 -278085572 + MER3 DNA MER1_type 121 208 -1 216 342 54 27 chr1 4108347 4108458 -278085206 + L2 LINE L2 3200 3313 0 2403 65 0 10 chr1 4108520 4108829 -278084835 - AluY SINE Alu -5 306 1 2157 103 7 3 chr1 4108829 4109129 -278084535 - AluSx SINE Alu -11 301 1 2285 73 0 3 chr1 4109177 4109477 -278084187 + AluY SINE Alu 1 299 -12 1408 83 0 0 chr1 4109478 4109658 -278084006 + AluSq SINE Alu 134 313 0 345 279 35 64 chr1 4110094 4110266 -278083398 + L1MC5 LINE L1 7536 7702 -259 412 277 207 24 chr1 4110267 4110480 -278083184 - L1ME1 LINE L1 -5 6161 5910 432 312 68 17 chr1 4110645 4110693 -278082971 + L1MC5 LINE L1 7625 7669 -292 1557 184 6 32 chr1 4110693 4111008 -278082656 - AluJb SINE Alu -1 311 5 432 312 68 17 chr1 4111008 4111251 -278082413 + L1MC5 LINE L1 7669 7931 -30 513 214 8 26 chr1 4112635 4112752 -278080912 - L1MB8 LINE L1 -9 6169 6055 827 231 12 12 chr1 4112776 4112949 -278080715 + MER21B LTR ERV1 39 211 -652 260 196 71 0 chr1 4112960 4113016 -278080648 + MER21B LTR ERV1 693 752 -111 1920 211 14 10 chr1 4113078 4113504 -278080160 - L1MB8 LINE L1 -532 5642 5220 988 173 9 91 chr1 4113521 4113582 -278080082 + AluJo SINE Alu 86 150 -162 2320 78 0 0 chr1 4113582 4113877 -278079787 + AluY SINE Alu 1 295 -16 988 173 9 91 chr1 4113877 4114046 -278079618 + AluJo SINE Alu 150 297 -15 2436 61 0 0 chr1 4114099 4114396 -278079268 + AluY SINE Alu 1 297 -14 2128 114 3 0 chr1 4114407 4114713 -278078951 + AluSq SINE Alu 1 307 -6 1454 166 37 24 chr1 4114760 4115056 -278078608 - AluJb SINE Alu -12 300 1 2211 71 27 3 chr1 4115157 4115454 -278078210 - AluSc SINE Alu -5 304 1 2226 50 0 14 chr1 4115455 4115733 -278077931 - AluY SINE Alu -37 274 1 2669 165 35 4 chr1 4115734 4116243 -278077421 - L1MB3 LINE L1 -355 5828 5304 280 295 19 0 chr1 4116278 4116383 -278077281 + (TA)n Simple_repeat Simple_repeat 1 107 0 2349 185 45 38 chr1 4116429 4116460 -278077204 - L1MB3 LINE L1 -840 5306 5277 453 76 38 13 chr1 4116460 4116539 -278077125 - L1MA5 LINE L1 0 6300 6220 2349 185 45 38 chr1 4116539 4116975 -278076689 - L1MB3 LINE L1 -869 5277 4878 2030 99 44 7 chr1 4116975 4117268 -278076396 - AluSg SINE Alu -6 304 1 2349 185 45 38 chr1 4117268 4117489 -278076175 - L1MB3 LINE L1 -1268 4878 4660 1637 156 22 19 chr1 4117531 4117801 -278075863 - AluSx SINE Alu -41 271 1 366 188 4 127 chr1 4117801 4117832 -278075832 - L1MB8 LINE L1 -1094 5052 5019 1667 159 7 21 chr1 4117832 4118121 -278075543 + AluJo SINE Alu 9 293 -19 366 188 4 127 chr1 4118121 4118225 -278075439 - L1MB8 LINE L1 -1127 5019 4931 2380 61 3 0 chr1 4118392 4118686 -278074978 + AluY SINE Alu 1 295 -16 270 0 0 0 chr1 4119488 4119518 -278074146 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2172 73 0 0 chr1 4119522 4119797 -278073867 - AluY SINE Alu -36 275 1 935 126 0 22 chr1 4120197 4120332 -278073332 - FLAM_C SINE Alu -1 132 1 1802 153 3 0 chr1 4120384 4120672 -278072992 - L1MC/D LINE L1 -732 5612 5324 33 0 0 0 chr1 4120692 4120725 -278072939 + AT_rich Low_complexity Low_complexity 1 33 0 1206 130 42 28 chr1 4120754 4120839 -278072825 - AluSq SINE Alu -95 218 136 2164 100 7 0 chr1 4120839 4121139 -278072525 - AluSq SINE Alu -11 302 1 1394 169 9 123 chr1 4121148 4121302 -278072362 - AluJb SINE Alu -12 290 120 2062 113 0 10 chr1 4121302 4121612 -278072052 - AluSq SINE Alu -5 308 2 1394 169 9 123 chr1 4121612 4121632 -278072032 - AluJb SINE Alu -182 120 99 2392 60 0 7 chr1 4121632 4121931 -278071733 - AluY SINE Alu -14 297 1 1394 169 9 123 chr1 4121931 4122081 -278071583 - AluJb SINE Alu -203 99 2 1206 130 42 28 chr1 4122081 4122200 -278071464 - AluSq SINE Alu -184 129 1 618 186 12 43 chr1 4122200 4122302 -278071362 - L1MC/D LINE L1 -847 5299 5202 2274 38 52 0 chr1 4122302 4122590 -278071074 - AluY SINE Alu -8 303 1 618 186 12 43 chr1 4122590 4122648 -278071016 - L1MC/D LINE L1 -944 5202 5144 188 224 20 0 chr1 4122871 4122920 -278070744 - MIR SINE MIR -61 147 98 234 217 72 0 chr1 4123581 4123664 -278070000 - L1MA10 LINE L1 -1 6333 6245 8895 115 20 51 chr1 4123664 4123703 -278069961 + Tigger1 DNA MER2_type 1 40 -2378 2270 100 0 0 chr1 4123703 4124003 -278069661 - AluSq SINE Alu -13 300 1 8895 115 20 51 chr1 4124003 4124035 -278069629 + Tigger1 DNA MER2_type 40 71 -2347 2127 102 3 3 chr1 4124035 4124329 -278069335 + AluSx SINE Alu 1 294 -18 8895 115 20 51 chr1 4124329 4124736 -278068928 + Tigger1 DNA MER2_type 71 489 -1929 1958 119 20 3 chr1 4124736 4125031 -278068633 + AluSx SINE Alu 1 300 -12 8895 115 20 51 chr1 4125031 4125520 -278068144 + Tigger1 DNA MER2_type 489 992 -1426 2098 132 0 0 chr1 4125520 4125823 -278067841 - AluSx SINE Alu -9 303 1 8895 115 20 51 chr1 4125823 4125924 -278067740 + Tigger1 DNA MER2_type 992 1095 -1323 2119 110 3 13 chr1 4125924 4126223 -278067441 + AluSx SINE Alu 1 296 -16 8895 115 20 51 chr1 4126223 4126477 -278067187 + Tigger1 DNA MER2_type 1095 1355 -1063 2263 105 0 0 chr1 4126477 4126782 -278066882 + AluSg SINE Alu 1 305 -5 8895 115 20 51 chr1 4126782 4126793 -278066871 + Tigger1 DNA MER2_type 1355 1365 -1053 2039 112 0 11 chr1 4126793 4127132 -278066532 + AluSx SINE Alu 1 336 0 8895 115 20 51 chr1 4127132 4127219 -278066445 + Tigger1 DNA MER2_type 1365 1379 -1039 2317 169 49 5 chr1 4127219 4127627 -278066037 - MSTB1 LTR MaLR -4 428 3 8895 115 20 51 chr1 4127627 4127724 -278065940 + Tigger1 DNA MER2_type 1379 1478 -940 1905 126 0 7 chr1 4127726 4128012 -278065652 + AluY SINE Alu 21 304 -7 1208 140 0 0 chr1 4128012 4128191 -278065473 + AluSg/x SINE Alu 132 310 0 520 159 71 26 chr1 4128191 4128304 -278065360 + Tigger1 DNA MER2_type 1471 1588 -830 1796 135 56 7 chr1 4128305 4128593 -278065071 + AluSx SINE Alu 1 302 -10 406 134 0 0 chr1 4128593 4128660 -278065004 + Tigger1 DNA MER2_type 1828 1894 -524 254 276 0 0 chr1 4128660 4128718 -278064946 + MER52A LTR ERV1 1 58 -1697 195 232 0 0 chr1 4128725 4128781 -278064883 + (CAG)n Simple_repeat Simple_repeat 2 57 0 5402 171 158 6 chr1 4129224 4130303 -278063361 + MER52A LTR ERV1 512 1755 0 2531 113 33 141 chr1 4130303 4130371 -278063293 + Tigger1 DNA MER2_type 1889 1963 -455 2336 70 0 3 chr1 4130371 4130669 -278062995 - AluY SINE Alu -14 297 1 2531 113 33 141 chr1 4130669 4130699 -278062965 + Tigger1 DNA MER2_type 1963 1995 -423 1491 106 13 13 chr1 4130699 4130926 -278062738 + AluSc SINE Alu 67 293 -16 2531 113 33 141 chr1 4130926 4130978 -278062686 + Tigger1 DNA MER2_type 1995 2051 -367 1753 169 0 13 chr1 4130978 4131285 -278062379 - AluJo SINE Alu -9 303 1 2531 113 33 141 chr1 4131285 4131414 -278062250 + Tigger1 DNA MER2_type 2051 2192 -226 2055 88 7 4 chr1 4131414 4131687 -278061977 + AluSx SINE Alu 25 298 -14 2531 113 33 141 chr1 4131687 4131802 -278061862 + Tigger1 DNA MER2_type 2192 2202 -216 2352 65 3 0 chr1 4131802 4132095 -278061569 - AluY SINE Alu -14 297 4 2531 113 33 141 chr1 4132095 4132291 -278061373 + Tigger1 DNA MER2_type 2202 2418 0 630 248 95 25 chr1 4132300 4132542 -278061122 - L1ME1 LINE L1 -88 6078 5820 1198 112 0 0 chr1 4132542 4132712 -278060952 - AluSq SINE Alu -10 303 134 2474 65 0 0 chr1 4132712 4133018 -278060646 - AluSc SINE Alu -3 306 1 2090 108 3 7 chr1 4133029 4133326 -278060338 - AluSx SINE Alu -16 296 1 844 181 0 0 chr1 4133383 4133516 -278060148 - FLAM_C SINE Alu 0 133 1 784 143 71 0 chr1 4133516 4133642 -278060022 - AluJb SINE Alu -24 288 154 7251 61 41 2 chr1 4133678 4133957 -278059707 - LTR13 LTR ERVK -13 994 727 204 40 0 0 chr1 4133957 4133982 -278059682 + (GA)n Simple_repeat Simple_repeat 2 26 0 7251 61 41 2 chr1 4133982 4134659 -278059005 - LTR13 LTR ERVK -280 727 1 754 178 0 22 chr1 4134683 4134818 -278058846 - FLAM_C SINE Alu -1 132 1 2320 98 0 0 chr1 4135132 4135437 -278058227 - AluSx SINE Alu -7 305 1 1627 154 20 29 chr1 4135763 4136069 -278057595 - AluSx SINE Alu -9 303 1 1906 236 38 11 chr1 4136082 4136135 -278057529 - L1MB7 LINE L1 -8 6176 6124 923 328 49 21 chr1 4136135 4136608 -278057056 - L1MD3 LINE L1 -1867 6128 5643 2255 92 0 7 chr1 4139417 4139723 -278053941 + AluSx SINE Alu 1 304 -8 2184 99 7 0 chr1 4140335 4140629 -278053035 - AluSp SINE Alu -17 296 1 2180 95 0 7 chr1 4140653 4140949 -278052715 - AluSg SINE Alu -16 294 1 260 212 50 10 chr1 4141086 4141185 -278052479 + (GGCTG)n Simple_repeat Simple_repeat 4 106 0 708 215 85 22 chr1 4141374 4141597 -278052067 - MLT1C LTR MaLR -225 242 6 250 348 82 15 chr1 4142122 4142392 -278051272 - L1ME1 LINE L1 -1981 5827 5540 311 317 145 0 chr1 4143120 4143341 -278050323 + L2 LINE L2 2834 3086 -186 2097 134 0 7 chr1 4143928 4144235 -278049429 - AluSx SINE Alu -6 306 2 816 163 0 0 chr1 4144252 4144381 -278049283 - AluJb SINE Alu -15 297 169 1886 137 58 0 chr1 4144424 4144717 -278048947 + AluSx SINE Alu 1 310 -2 1763 52 39 4 chr1 4144765 4144995 -278048669 + AluY SINE Alu 63 300 -11 204 211 0 0 chr1 4145203 4145241 -278048423 + GA-rich Low_complexity Low_complexity 2 39 0 356 279 29 0 chr1 4146640 4146744 -278046920 - MIR SINE MIR -97 165 59 1657 198 36 33 chr1 4148802 4149166 -278044498 - MLT1A1 LTR MaLR 0 365 1 309 135 0 0 chr1 4149221 4149273 -278044391 + (TG)n Simple_repeat Simple_repeat 1 52 0 470 276 24 86 chr1 4149698 4149795 -278043869 - MIR SINE MIR -12 250 171 2192 120 0 7 chr1 4149795 4150103 -278043561 - AluSx SINE Alu -6 306 1 470 276 24 86 chr1 4150103 4150215 -278043449 - MIR SINE MIR -91 171 54 988 293 123 22 chr1 4150538 4151202 -278042462 + L2 LINE L2 2293 3025 -288 1738 165 0 4 chr1 4151207 4151480 -278042184 + AluJb SINE Alu 24 295 -17 414 369 7 0 chr1 4151706 4151855 -278041809 - MIR SINE MIR -19 243 94 505 277 144 5 chr1 4152040 4152242 -278041422 - MIR SINE MIR -36 226 8 2387 90 0 0 chr1 4152792 4153102 -278040562 - AluSg SINE Alu 0 310 1 237 264 94 28 chr1 4154175 4154281 -278039383 - MER5A DNA MER1_type -19 170 58 310 372 25 0 chr1 4154793 4154914 -278038750 + L1ME4a LINE L1 5647 5770 -2038 988 159 6 24 chr1 4154958 4155128 -278038536 + FAM SINE Alu 5 171 -4 1793 170 38 57 chr1 4155191 4155561 -278038103 + MLT1A1 LTR MaLR 2 364 -1 2459 55 0 0 chr1 4155833 4156125 -278037539 - AluY SINE Alu -19 292 1 2127 105 31 0 chr1 4156153 4156439 -278037225 + AluSx SINE Alu 1 295 -17 2131 122 0 0 chr1 4156528 4156832 -278036832 - AluSx SINE Alu -8 304 1 451 238 98 0 chr1 4157018 4157140 -278036524 + L1ME4a LINE L1 5965 6098 -23 2362 52 0 3 chr1 4157320 4157637 -278036027 + AluY SINE Alu 1 316 0 278 45 159 0 chr1 4157637 4157681 -278035983 + AluSc SINE Alu 130 180 -119 1256 53 0 0 chr1 4157695 4157846 -278035818 + AluYa8 SINE Alu 148 298 -12 266 340 57 0 chr1 4158268 4158374 -278035290 - MIR SINE MIR -70 192 81 2057 104 0 78 chr1 4159558 4159893 -278033771 - AluSx SINE Alu -3 309 1 189 171 0 0 chr1 4160095 4160130 -278033534 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 223 328 0 0 chr1 4160823 4160887 -278032777 + L2 LINE L2 3247 3310 -3 2034 95 44 7 chr1 4161227 4161521 -278032143 - AluSg SINE Alu -5 305 1 1829 126 30 43 chr1 4162077 4162233 -278031431 - AluJb SINE Alu -14 298 146 2430 62 13 0 chr1 4162233 4162537 -278031127 - AluSp SINE Alu -5 308 1 1829 126 30 43 chr1 4162537 4162681 -278030983 - AluJb SINE Alu -166 146 2 463 265 37 7 chr1 4162743 4162879 -278030785 + MIR3 SINE MIR 69 208 0 2402 70 0 19 chr1 4164715 4165051 -278028613 - AluY SINE Alu 0 331 2 540 300 91 11 chr1 4166002 4166388 -278027276 - MLT1C LTR MaLR -6 461 6 285 221 0 26 chr1 4167415 4167492 -278026172 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 254 29 29 0 chr1 4167497 4167532 -278026132 + (CA)n Simple_repeat Simple_repeat 2 37 0 183 42 0 0 chr1 4168882 4168906 -278024758 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2001 86 0 70 chr1 4168906 4169207 -278024457 - AluSx SINE Alu -32 280 1 2248 97 3 0 chr1 4169514 4169822 -278023842 + AluSc SINE Alu 1 309 0 2135 121 0 19 chr1 4170627 4170942 -278022722 - AluSx SINE Alu -3 309 1 2341 76 0 0 chr1 4172168 4172469 -278021195 - AluY SINE Alu -10 301 1 584 214 68 24 chr1 4172688 4172871 -278020793 + MLT1D LTR MaLR 28 200 -190 297 0 0 0 chr1 4173815 4173848 -278019816 + (TA)n Simple_repeat Simple_repeat 1 33 0 2335 89 3 0 chr1 4173848 4174150 -278019514 - AluSx SINE Alu -9 303 1 2300 106 3 0 chr1 4174426 4174737 -278018927 - AluSq SINE Alu -1 312 1 1976 152 76 19 chr1 4174772 4175140 -278018524 + MLT1B LTR MaLR 2 390 0 2138 78 42 0 chr1 4175784 4176067 -278017597 + AluY SINE Alu 1 295 -16 339 294 132 47 chr1 4176944 4177240 -278016424 + MLT1J1 LTR MaLR 126 446 0 502 314 118 4 chr1 4177339 4177568 -278016096 - MIR SINE MIR -6 256 2 2138 132 0 0 chr1 4178093 4178389 -278015275 + AluSx SINE Alu 1 296 -16 1951 120 7 7 chr1 4179230 4179521 -278014143 + AluJo SINE Alu 1 291 -21 2380 94 0 0 chr1 4179554 4179863 -278013801 + AluSx SINE Alu 1 309 -3 263 243 0 75 chr1 4180484 4180591 -278013073 + L2 LINE L2 2933 3031 -241 2081 108 0 17 chr1 4180770 4181058 -278012606 - AluSx SINE Alu -29 283 1 2450 67 0 13 chr1 4181802 4182116 -278011548 - AluY SINE Alu -1 310 1 33 0 0 0 chr1 4183172 4183205 -278010459 + AT_rich Low_complexity Low_complexity 1 33 0 327 284 99 12 chr1 4183527 4183689 -278009975 - HAL1 LINE L1 -652 1855 1680 304 289 30 52 chr1 4183734 4183869 -278009795 - MLT1J LTR MaLR -54 457 326 278 298 36 0 chr1 4184525 4184609 -278009055 - MER5A DNA MER1_type -89 100 14 600 97 11 0 chr1 4184732 4184818 -278008846 - L1MA1 LINE L1 -4 6298 6209 2067 136 0 13 chr1 4184818 4185128 -278008536 + AluSx SINE Alu 1 306 -6 198 103 0 0 chr1 4185137 4185166 -278008498 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 1209 130 9 9 chr1 4185174 4185389 -278008275 - L1MA1 LINE L1 -82 6220 6006 349 288 29 58 chr1 4185602 4185741 -278007923 + MER5B DNA MER1_type 15 149 -29 394 258 57 98 chr1 4186484 4186548 -278007116 - MER5A DNA MER1_type -1 188 123 2093 139 0 13 chr1 4186548 4186864 -278006800 + AluSx SINE Alu 1 312 0 394 258 57 98 chr1 4186864 4186993 -278006671 - MER5A DNA MER1_type -66 123 3 229 350 90 11 chr1 4187278 4187455 -278006209 + L2 LINE L2 2086 2276 -1038 462 298 77 80 chr1 4187807 4188159 -278005505 + L1M4 LINE L1 2775 3125 -3021 319 219 134 0 chr1 4190151 4190233 -278003431 + L2 LINE L2 3179 3271 -1 185 256 116 35 chr1 4190364 4190450 -278003214 - L2 LINE L2 -8 3264 3172 9376 15 3 251 chr1 4191349 4193192 -278000472 + SVA Other Other 1 1386 0 240 111 0 0 chr1 4193232 4193268 -278000396 + (T)n Simple_repeat Simple_repeat 1 36 0 283 342 114 63 chr1 4195133 4195657 -277998007 - L3 LINE CR1 -114 1463 913 204 67 0 0 chr1 4195941 4195971 -277997693 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 192 250 171 0 chr1 4195972 4196048 -277997616 - L2 LINE L2 -14 3258 3170 252 319 96 24 chr1 4196555 4196721 -277996943 + MIR SINE MIR 1 178 -84 257 106 0 21 chr1 4197873 4197920 -277995744 + (CA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr1 4197925 4197945 -277995719 + (TC)n Simple_repeat Simple_repeat 2 21 0 241 376 31 25 chr1 4198345 4198507 -277995157 - MIR SINE MIR -59 203 41 2151 121 0 0 chr1 4199153 4199450 -277994214 + AluSx SINE Alu 3 299 -13 271 319 93 24 chr1 4199687 4200018 -277993646 - L1MC5 LINE L1 -60 7901 7516 2073 123 3 0 chr1 4200248 4200540 -277993124 + AluSx SINE Alu 1 293 -19 343 238 0 0 chr1 4200594 4200674 -277992990 - MER116 DNA Mariner 0 80 1 832 153 0 36 chr1 4200710 4200847 -277992817 + FLAM_C SINE Alu 2 133 0 2286 93 0 3 chr1 4200863 4201165 -277992499 + AluSg SINE Alu 1 301 -9 2416 216 68 27 chr1 4201335 4201393 -277992271 - L1MB8 LINE L1 -5 6173 6119 1587 171 42 3 chr1 4201393 4201679 -277991985 + AluJo SINE Alu 1 297 -15 2416 216 68 27 chr1 4201679 4202314 -277991350 - L1MB8 LINE L1 -59 6119 5452 972 218 0 35 chr1 4203872 4204074 -277989590 - AluJo SINE Alu -17 295 101 2499 65 0 0 chr1 4204397 4204706 -277988958 + AluY SINE Alu 1 309 -2 1112 135 5 16 chr1 4204726 4204919 -277988745 + AluSg/x SINE Alu 120 310 0 875 261 52 41 chr1 4206054 4206418 -277987246 - MLT1C LTR MaLR -41 426 59 1284 239 156 5 chr1 4207261 4207692 -277985972 - MLT1D LTR MaLR -3 502 7 663 191 8 46 chr1 4207758 4207909 -277985755 + FLAM_A SINE Alu 2 133 0 1516 136 107 18 chr1 4207912 4208184 -277985480 + AluJb SINE Alu 1 296 -16 2420 77 0 0 chr1 4208186 4208498 -277985166 + AluSx SINE Alu 1 312 0 422 367 58 22 chr1 4210073 4210299 -277983365 - MIR SINE MIR -28 234 1 1138 58 0 0 chr1 4210500 4210637 -277983027 + AluY SINE Alu 1 137 -174 367 243 126 10 chr1 4210964 4211067 -277982597 - MIR SINE MIR -123 139 25 2335 94 3 0 chr1 4212983 4213291 -277980373 - AluSq SINE Alu -4 309 1 1132 153 0 0 chr1 4213574 4213744 -277979920 - AluJb SINE Alu -13 299 130 1700 171 7 14 chr1 4214122 4214415 -277979249 + AluSx SINE Alu 3 293 -19 207 329 130 49 chr1 4215845 4216091 -277977573 + L3 LINE CR1 1301 1566 -11 181 308 33 0 chr1 4217905 4217996 -277975668 - L2 LINE L2 -216 3056 2963 192 286 198 0 chr1 4219330 4219456 -277974208 + L2 LINE L2 2912 3062 -251 469 257 71 0 chr1 4219551 4219691 -277973973 + MIR SINE MIR 35 184 -78 293 305 109 56 chr1 4219720 4220077 -277973587 - L2 LINE L2 -96 3217 2842 2157 89 48 0 chr1 4221842 4222135 -277971529 - AluSg SINE Alu -3 307 1 232 207 17 35 chr1 4225306 4225319 -277968345 - L2 LINE L2 -1 3271 3259 237 65 0 0 chr1 4225319 4225350 -277968314 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 232 207 17 35 chr1 4225350 4225394 -277968270 - L2 LINE L2 -13 3259 3215 514 234 27 24 chr1 4228352 4228515 -277965149 + MIR SINE MIR 25 183 -67 934 241 92 3 chr1 4229324 4229619 -277964045 - L1MB8 LINE L1 0 6178 5858 190 298 123 0 chr1 4229649 4229706 -277963958 - MIR SINE MIR -73 189 126 249 33 0 0 chr1 4230094 4230124 -277963540 + (CAGG)n Simple_repeat Simple_repeat 1 30 0 410 239 246 0 chr1 4231026 4231168 -277962496 + MER5A DNA MER1_type 13 189 0 298 219 0 14 chr1 4231969 4232042 -277961622 + MER94 DNA DNA 44 115 -19 223 185 93 0 chr1 4234670 4234724 -277958940 + MIR SINE MIR 40 98 -164 234 217 33 0 chr1 4235735 4235795 -277957869 + GA-rich Low_complexity Low_complexity 1 62 0 181 245 20 0 chr1 4236079 4236128 -277957536 + L2 LINE L2 3015 3064 -208 237 146 0 0 chr1 4236348 4236396 -277957268 + (CGGA)n Simple_repeat Simple_repeat 4 51 0 40 123 0 0 chr1 4236408 4236700 -277956964 + GC_rich Low_complexity Low_complexity 1 292 0 277 341 78 8 chr1 4238108 4238237 -277955427 + MIR SINE MIR 12 149 -113 1835 163 0 3 chr1 4238313 4238607 -277955057 - AluJb SINE Alu -19 293 1 2163 77 49 3 chr1 4239157 4239443 -277954221 + AluSq SINE Alu 1 299 -14 229 250 44 0 chr1 4240711 4240779 -277952885 - MLT1A1 LTR MaLR -1 456 386 820 174 0 8 chr1 4240784 4240916 -277952748 + FLAM_A SINE Alu 1 131 -2 2010 127 10 16 chr1 4240916 4241230 -277952434 + AluSx SINE Alu 1 312 0 347 274 11 11 chr1 4241266 4241361 -277952303 - MLT1A1 LTR MaLR -86 279 185 1689 155 3 46 chr1 4241491 4241635 -277952029 + AluJo SINE Alu 1 127 -185 2244 107 3 3 chr1 4241635 4241943 -277951721 + AluSg SINE Alu 1 308 -2 1689 155 3 46 chr1 4241943 4242101 -277951563 + AluJo SINE Alu 127 290 -22 2197 69 4 0 chr1 4242110 4242384 -277951280 + AluY SINE Alu 22 296 -15 238 111 89 0 chr1 4242437 4242482 -277951182 - MLT1A1 LTR MaLR -378 50 2 411 273 81 9 chr1 4243930 4244078 -277949586 - MIR SINE MIR -37 171 46 2101 113 3 25 chr1 4244156 4244476 -277949188 - AluSq SINE Alu 0 313 1 395 336 14 2 chr1 4245290 4245429 -277948235 - MIR SINE MIR -63 145 31 225 239 30 60 chr1 4245555 4245622 -277948042 + MIR SINE MIR 83 147 -115 889 176 13 0 chr1 4245625 4245778 -277947886 + FRAM SINE Alu 1 154 -22 360 244 136 29 chr1 4246642 4246849 -277946815 - MIR SINE MIR -21 241 3 213 259 19 44 chr1 4247848 4248006 -277945658 + C-rich Low_complexity Low_complexity 1 154 0 27 29 0 0 chr1 4248130 4248164 -277945500 + GC_rich Low_complexity Low_complexity 1 34 0 204 266 65 0 chr1 4248795 4248868 -277944796 + MIR3 SINE MIR 107 185 -23 21 0 0 0 chr1 4252234 4252255 -277941409 + GC_rich Low_complexity Low_complexity 1 21 0 527 120 0 43 chr1 4252504 4252621 -277941043 + (GGGGA)n Simple_repeat Simple_repeat 2 113 0 297 154 0 0 chr1 4252818 4252870 -277940794 - FLAM SINE Alu -25 108 57 30 0 0 0 chr1 4255100 4255130 -277938534 + GC_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr1 4255177 4255212 -277938452 + GC_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr1 4256695 4256726 -277936938 + (A)n Simple_repeat Simple_repeat 1 31 0 2393 90 0 0 chr1 4257553 4257863 -277935801 + AluSg SINE Alu 1 310 0 1147 142 0 0 chr1 4259000 4259176 -277934488 + FRAM SINE Alu 1 175 -1 254 239 115 53 chr1 4259227 4259340 -277934324 - MIR SINE MIR -115 147 28 273 173 55 100 chr1 4259814 4259835 -277933829 - L1ME4a LINE L1 -9 6112 6092 2275 78 3 7 chr1 4259835 4260130 -277933534 + AluSq SINE Alu 1 294 -19 273 173 55 100 chr1 4260130 4260218 -277933446 - L1ME4a LINE L1 -29 6092 6008 737 156 14 71 chr1 4260218 4260359 -277933305 + FLAM_C SINE Alu 1 133 0 2315 48 17 3 chr1 4260509 4260801 -277932863 + AluY SINE Alu 1 296 -15 2221 85 0 3 chr1 4261024 4261318 -277932346 - AluSx SINE Alu -19 293 1 23 33 0 0 chr1 4261461 4261491 -277932173 + GC_rich Low_complexity Low_complexity 1 30 0 21 100 0 0 chr1 4261637 4261707 -277931957 + GC_rich Low_complexity Low_complexity 1 70 0 41 0 0 0 chr1 4261874 4261915 -277931749 + GC_rich Low_complexity Low_complexity 1 41 0 540 277 106 0 chr1 4262319 4262486 -277931178 - MIR SINE MIR -45 217 35 1956 90 0 97 chr1 4263412 4263752 -277929912 + AluSg SINE Alu 2 310 0 2320 65 7 3 chr1 4264432 4264726 -277928938 + AluSg SINE Alu 1 295 -15 2141 116 3 0 chr1 4264738 4265031 -277928633 + AluSq SINE Alu 1 294 -19 331 216 41 0 chr1 4265721 4265818 -277927846 - L1MB7 LINE L1 0 6184 6084 802 171 0 14 chr1 4266016 4266156 -277927508 - FLAM_C SINE Alu 0 143 6 1292 196 117 7 chr1 4266385 4266666 -277926998 - AluJo SINE Alu 0 312 1 2227 96 0 26 chr1 4266666 4266978 -277926686 - AluY SINE Alu -7 304 1 1613 116 6 84 chr1 4266978 4267191 -277926473 - AluJo SINE Alu -8 304 121 1916 149 0 0 chr1 4267191 4267467 -277926197 + AluSx SINE Alu 21 296 -16 1613 116 6 84 chr1 4267467 4267564 -277926100 - AluJo SINE Alu -191 121 18 918 162 0 0 chr1 4267574 4267722 -277925942 + AluSg/x SINE Alu 155 302 -8 369 0 0 0 chr1 4267761 4267802 -277925862 + (TG)n Simple_repeat Simple_repeat 2 42 0 687 172 41 41 chr1 4267803 4267948 -277925716 - AluJb SINE Alu 0 312 168 1605 141 4 38 chr1 4267948 4268076 -277925588 - AluSx SINE Alu -51 261 145 2279 99 3 6 chr1 4268076 4268389 -277925275 - AluSp SINE Alu -1 312 1 1605 141 4 38 chr1 4268389 4268522 -277925142 - AluSx SINE Alu -167 145 9 2132 112 0 19 chr1 4268527 4268841 -277924823 - AluSx SINE Alu -4 308 1 998 162 134 69 chr1 4268885 4268944 -277924720 + AluJo SINE Alu 37 91 -221 2405 82 0 0 chr1 4268944 4269247 -277924417 + AluY SINE Alu 1 303 -8 998 162 134 69 chr1 4269247 4269434 -277924230 + AluJo SINE Alu 91 299 -13 1227 206 14 0 chr1 4269482 4269700 -277923964 - AluJo SINE Alu -91 221 1 2471 66 0 3 chr1 4269707 4270012 -277923652 - AluY SINE Alu -7 304 1 229 302 203 0 chr1 4270377 4270569 -277923095 + MER112 DNA MER1_type 8 238 -22 455 288 107 42 chr1 4270617 4270711 -277922953 + MIR SINE MIR 19 105 -157 781 200 0 0 chr1 4270711 4270841 -277922823 + FLAM_A SINE Alu 1 130 -3 455 288 107 42 chr1 4270841 4270961 -277922703 + MIR SINE MIR 105 247 -15 2033 118 7 3 chr1 4271177 4271473 -277922191 - AluSx SINE Alu -15 297 1 1424 158 22 0 chr1 4271501 4271723 -277921941 + AluJb SINE Alu 71 297 -15 429 340 63 0 chr1 4273790 4273949 -277919715 + MIR SINE MIR 50 218 -44 2214 104 0 3 chr1 4274179 4274487 -277919177 + AluSg SINE Alu 1 307 -3 2201 72 7 30 chr1 4275142 4275447 -277918217 - AluSx SINE Alu -14 298 1 2192 93 0 10 chr1 4277488 4277788 -277915876 + AluSp SINE Alu 1 297 -16 2341 76 3 3 chr1 4277792 4278096 -277915568 + AluSq SINE Alu 1 304 -9 206 297 54 0 chr1 4279663 4279737 -277913927 - L2 LINE L2 -333 2939 2862 1078 294 123 24 chr1 4279865 4280421 -277913243 - L2 LINE L2 -718 2596 2096 1812 164 17 0 chr1 4280421 4280719 -277912945 + AluJb SINE Alu 1 303 -9 2268 62 0 33 chr1 4280719 4281025 -277912639 + AluSc SINE Alu 1 297 -12 1078 294 123 24 chr1 4281025 4281167 -277912497 - L2 LINE L2 -1217 2097 1828 471 237 7 65 chr1 4281618 4281757 -277911907 + HAL1 LINE L1 772 902 -1605 1055 96 13 13 chr1 4281762 4281918 -277911746 + AluSg/x SINE Alu 140 295 -17 365 216 126 32 chr1 4281922 4282112 -277911552 + HAL1 LINE L1 902 1109 -1398 896 134 0 8 chr1 4282119 4282253 -277911411 + FLAM_C SINE Alu 1 133 0 2254 103 6 0 chr1 4282258 4282569 -277911095 + AluSp SINE Alu 1 313 0 1429 228 89 48 chr1 4282574 4282659 -277911005 + HAL1 LINE L1 1195 1275 -1232 2135 99 26 7 chr1 4282659 4282962 -277910702 + AluSc SINE Alu 1 309 0 1647 96 0 0 chr1 4282967 4283187 -277910477 + AluSg/x SINE Alu 85 304 -8 1429 228 89 48 chr1 4283187 4283600 -277910064 + HAL1 LINE L1 1278 1720 -787 305 98 0 0 chr1 4284097 4284148 -277909516 - AluSx SINE Alu 0 302 252 1450 107 0 0 chr1 4284150 4284347 -277909317 - AluSx SINE Alu -115 197 1 196 260 62 73 chr1 4285834 4285930 -277907734 + MER5B DNA MER1_type 22 116 -62 269 262 80 91 chr1 4287817 4288004 -277905660 + L2 LINE L2 3015 3199 -73 24 0 0 0 chr1 4288202 4288226 -277905438 + GC_rich Low_complexity Low_complexity 1 24 0 216 180 0 40 chr1 4288862 4288912 -277904752 - MIR SINE MIR -114 148 101 2037 89 43 0 chr1 4288979 4289260 -277904404 + AluSx SINE Alu 1 293 -19 203 247 136 25 chr1 4289843 4289924 -277903740 + MIR SINE MIR 57 146 -62 226 297 10 40 chr1 4290581 4290682 -277902982 + MIR SINE MIR 46 143 -65 1987 66 80 0 chr1 4291835 4292109 -277901555 + AluSx SINE Alu 1 296 -16 283 253 72 0 chr1 4292261 4292344 -277901320 + MIR SINE MIR 36 124 -84 1570 130 123 4 chr1 4292760 4293029 -277900635 - AluJb SINE Alu -11 301 1 186 71 0 0 chr1 4293029 4293057 -277900607 + (T)n Simple_repeat Simple_repeat 1 28 0 698 152 0 9 chr1 4293095 4293207 -277900457 - FLAM_C SINE Alu -32 111 1 2347 57 10 3 chr1 4293313 4293609 -277900055 - AluY SINE Alu -13 298 1 2451 62 3 0 chr1 4293708 4294012 -277899652 - AluSp SINE Alu -8 305 1 205 282 0 24 chr1 4294054 4294139 -277899525 - MIR SINE MIR -30 232 150 183 275 0 0 chr1 4294253 4294293 -277899371 - L2 LINE L2 -3 3310 3271 1577 103 117 72 chr1 4294393 4294528 -277899136 + AluSx SINE Alu 1 128 -184 2291 94 0 7 chr1 4294528 4294837 -277898827 + AluSg SINE Alu 1 307 -3 1577 103 117 72 chr1 4294837 4294991 -277898673 + AluSx SINE Alu 128 303 -9 225 283 100 29 chr1 4295059 4295115 -277898549 - L2 LINE L2 -236 3036 2985 1871 160 3 7 chr1 4295115 4295421 -277898243 + AluJo SINE Alu 1 305 -7 225 283 100 29 chr1 4295421 4295571 -277898093 - L2 LINE L2 -287 2985 2817 200 159 23 45 chr1 4295571 4295659 -277898005 + G-rich Low_complexity Low_complexity 1 86 0 1832 148 9 28 chr1 4295856 4295988 -277897676 + AluJo SINE Alu 1 134 -178 180 0 0 0 chr1 4295988 4296008 -277897656 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1832 148 9 28 chr1 4296008 4296193 -277897471 + AluJo SINE Alu 134 312 0 227 331 117 7 chr1 4296194 4296280 -277897384 - L2 LINE L2 -1914 1400 1325 1046 182 0 0 chr1 4296280 4296445 -277897219 + FRAM SINE Alu 1 165 -1 227 331 117 7 chr1 4296445 4296512 -277897152 - L2 LINE L2 -1989 1325 1230 743 184 209 8 chr1 4296512 4297020 -277896644 - LTR50 LTR ERVL -2 793 29 243 291 55 27 chr1 4297080 4297190 -277896474 - L2 LINE L2 -2194 1120 1008 431 262 29 0 chr1 4297257 4297360 -277896304 + MER5A DNA MER1_type 4 109 -80 205 300 0 0 chr1 4297400 4297470 -277896194 - L2 LINE L2 -2392 922 853 227 282 94 0 chr1 4297473 4297558 -277896106 - L2 LINE L2 -2731 583 491 2141 107 0 7 chr1 4300256 4300556 -277893108 + AluSg SINE Alu 1 298 -12 2205 119 0 0 chr1 4301493 4301805 -277891859 - AluSp SINE Alu -1 312 1 2018 147 3 6 chr1 4301806 4302118 -277891546 - AluSx SINE Alu -1 311 1 2333 80 0 7 chr1 4302121 4302422 -277891242 - AluY SINE Alu -12 299 1 1995 91 4 0 chr1 4302427 4302692 -277890972 - AluY SINE Alu -8 303 38 1671 183 21 3 chr1 4302692 4302981 -277890683 - AluJo SINE Alu -18 294 1 181 271 125 88 chr1 4303009 4303201 -277890463 - MIR3 SINE MIR -1 207 9 1952 123 7 0 chr1 4303359 4303644 -277890020 - AluJb SINE Alu -7 305 19 1206 202 39 62 chr1 4303835 4303963 -277889701 + AluJb SINE Alu 1 130 -172 2288 74 7 0 chr1 4303963 4304262 -277889402 + AluSp SINE Alu 1 301 -12 1206 202 39 62 chr1 4304262 4304440 -277889224 + AluJb SINE Alu 130 300 -2 2053 121 0 3 chr1 4304873 4305170 -277888494 - AluSx SINE Alu -16 296 1 1729 176 14 3 chr1 4305239 4305535 -277888129 + AluJo SINE Alu 1 299 -13 2147 120 0 3 chr1 4305570 4305870 -277887794 - AluSx SINE Alu -13 299 1 985 118 0 40 chr1 4305870 4305883 -277887781 - AluSq/x SINE Alu -167 146 134 2470 50 0 25 chr1 4305883 4306200 -277887464 - AluY SINE Alu -2 309 1 2318 78 3 10 chr1 4306200 4306508 -277887156 - AluSg SINE Alu -4 306 1 985 118 0 40 chr1 4306508 4306645 -277887019 - AluSq/x SINE Alu -177 136 1 2049 87 7 0 chr1 4306933 4307210 -277886454 + AluSp SINE Alu 27 305 -8 2219 98 0 3 chr1 4307643 4307948 -277885716 - AluSq SINE Alu -9 304 1 925 165 24 0 chr1 4308007 4308171 -277885493 - AluJo SINE Alu -10 302 135 2272 51 20 7 chr1 4308501 4308793 -277884871 + AluSp SINE Alu 2 297 -16 26 0 0 0 chr1 4309026 4309052 -277884612 + AT_rich Low_complexity Low_complexity 1 26 0 891 135 0 0 chr1 4309052 4309178 -277884486 - AluJo SINE Alu -186 126 1 1495 164 95 4 chr1 4309254 4309528 -277884136 + AluSx SINE Alu 1 299 -13 2147 123 0 0 chr1 4309943 4310253 -277883411 - AluY SINE Alu -1 310 1 2129 117 7 0 chr1 4310256 4310554 -277883110 - AluSx SINE Alu -6 306 7 2224 78 7 20 chr1 4314635 4314941 -277878723 - AluSx SINE Alu -10 302 1 1962 81 23 55 chr1 4315218 4315528 -277878136 + AluSc SINE Alu 1 300 -9 40 59 0 0 chr1 4317673 4317741 -277875923 + GC_rich Low_complexity Low_complexity 1 68 0 29 90 0 0 chr1 4317869 4317947 -277875717 + GC_rich Low_complexity Low_complexity 1 78 0 377 270 157 36 chr1 4319483 4319885 -277873779 + L2 LINE L2 2495 3030 -283 750 180 0 0 chr1 4319945 4320067 -277873597 - FLAM_A SINE Alu -7 126 5 591 290 55 19 chr1 4320703 4320939 -277872725 + MIR SINE MIR 10 256 -6 226 204 59 13 chr1 4321560 4321712 -277871952 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 439 231 18 0 chr1 4321735 4321904 -277871760 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 716 127 42 0 chr1 4321961 4322126 -277871538 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 989 98 44 10 chr1 4322137 4323223 -277870441 + (TCCA)n Simple_repeat Simple_repeat 1 1300 0 269 236 0 28 chr1 4323298 4323370 -277870294 + (TCTCTG)n Simple_repeat Simple_repeat 5 74 0 234 301 0 72 chr1 4323325 4323518 -277870146 + CT-rich Low_complexity Low_complexity 1 179 0 * 283 309 73 8 chr1 4323924 4324047 -277869617 - MIR SINE MIR -37 225 95 2524 50 0 0 chr1 4324182 4324484 -277869180 + AluY SINE Alu 1 302 -9 280 264 27 73 chr1 4324971 4325081 -277868583 + MIR SINE MIR 43 147 -115 771 173 87 7 chr1 4325081 4325256 -277868408 + AluJb SINE Alu 121 307 0 237 200 33 33 chr1 4327435 4327495 -277866169 + MIR SINE MIR 39 98 -164 2138 126 7 0 chr1 4328539 4328848 -277864816 - AluSx SINE Alu 0 312 2 226 287 50 69 chr1 4330002 4330103 -277863561 - MIR SINE MIR -46 216 118 390 318 60 7 chr1 4330194 4330345 -277863319 - MIR SINE MIR -70 192 34 248 269 39 62 chr1 4330698 4330828 -277862836 - L2 LINE L2 -539 2775 2649 204 252 48 19 chr1 4332505 4332608 -277861056 + (TCTCTG)n Simple_repeat Simple_repeat 1 106 0 255 304 0 39 chr1 4332649 4332751 -277860913 + CT-rich Low_complexity Low_complexity 4 101 0 2227 107 3 16 chr1 4335169 4335486 -277858178 - AluSp SINE Alu 0 313 1 290 253 55 55 chr1 4335530 4335640 -277858024 - MIR SINE MIR -63 145 39 260 330 0 22 chr1 4336394 4336485 -277857179 + CT-rich Low_complexity Low_complexity 2 90 0 239 284 0 12 chr1 4338147 4338228 -277855436 + GA-rich Low_complexity Low_complexity 1 80 0 288 0 0 0 chr1 4338326 4338358 -277855306 + (TG)n Simple_repeat Simple_repeat 1 32 0 2129 72 11 18 chr1 4338358 4338555 -277855109 - AluSc SINE Alu -33 276 80 2716 16 0 0 chr1 4338555 4338860 -277854804 - AluYa5 SINE Alu -6 305 1 2129 72 11 18 chr1 4338860 4338940 -277854724 - AluSc SINE Alu -229 80 1 496 200 157 0 chr1 4338942 4339057 -277854607 - FLAM_A SINE Alu -9 133 1 236 235 94 0 chr1 4339546 4339631 -277854033 - MER113 DNA MER1_type? -419 102 10 510 260 164 11 chr1 4340498 4340675 -277852989 - MIR SINE MIR -8 254 51 2180 118 3 0 chr1 4341027 4341331 -277852333 - AluSx SINE Alu -7 305 1 192 125 0 0 chr1 4342796 4342828 -277850836 + (CGG)n Simple_repeat Simple_repeat 3 34 0 261 0 0 0 chr1 4343729 4343758 -277849906 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2122 82 0 7 chr1 4343758 4344039 -277849625 - AluSx SINE Alu -33 279 1 313 326 36 22 chr1 4344852 4344990 -277848674 + MIR SINE MIR 58 197 -65 195 220 0 0 chr1 4345174 4345224 -277848440 + (TG)n Simple_repeat Simple_repeat 2 51 0 313 270 14 0 chr1 4345332 4345406 -277848258 + MIR3 SINE MIR 114 188 -20 326 370 110 37 chr1 4345897 4346224 -277847440 - L2 LINE L2 -5 3267 2917 200 170 43 21 chr1 4346925 4346972 -277846692 + CT-rich Low_complexity Low_complexity 4 51 0 1109 145 15 4 chr1 4346976 4347958 -277845706 + (TCCA)n Simple_repeat Simple_repeat 1 1171 0 195 42 0 0 chr1 4347967 4347991 -277845673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 227 293 0 0 chr1 4348508 4348590 -277845074 + GA-rich Low_complexity Low_complexity 3 84 0 23 33 0 0 chr1 4348741 4348771 -277844893 + GC_rich Low_complexity Low_complexity 1 30 0 359 237 93 10 chr1 4349096 4349193 -277844471 - MIR SINE MIR -63 145 41 243 266 16 0 chr1 4349443 4349507 -277844157 + (TG)n Simple_repeat Simple_repeat 2 66 0 203 270 149 0 chr1 4349868 4349942 -277843722 - MIR SINE MIR -65 143 59 465 297 65 19 chr1 4351761 4351916 -277841748 - MIR SINE MIR -90 172 11 198 234 169 13 chr1 4352272 4352349 -277841315 + MIR SINE MIR 4 92 -170 217 183 24 122 chr1 4353215 4353297 -277840367 + MIR SINE MIR 62 135 -73 1731 130 87 0 chr1 4354253 4354529 -277839135 + AluJo SINE Alu 1 300 -12 533 333 78 19 chr1 4354597 4354918 -277838746 - L2 LINE L2 -2 3270 2931 1134 217 120 69 chr1 4355614 4355952 -277837712 - MLT1C LTR MaLR -2 465 146 210 37 0 0 chr1 4355952 4355979 -277837685 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1686 141 7 4 chr1 4355983 4356252 -277837412 - AluSx SINE Alu -42 270 1 1906 122 7 10 chr1 4356259 4356584 -277837080 - AluSx SINE Alu 0 324 1 306 0 0 0 chr1 4356584 4356618 -277837046 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1453 165 137 4 chr1 4356618 4356867 -277836797 - AluJb SINE Alu -18 284 3 1134 217 120 69 chr1 4356867 4356946 -277836718 - MLT1C LTR MaLR -327 140 10 371 241 152 18 chr1 4356954 4357066 -277836598 + MIR SINE MIR 76 202 -60 268 176 0 0 chr1 4357107 4357158 -277836506 - MER5A DNA MER1_type -77 112 62 2302 94 3 0 chr1 4357158 4357465 -277836199 - AluSc SINE Alu -1 308 1 2601 180 25 44 chr1 4357807 4357871 -277835793 - L1MB2 LINE L1 -7 6164 6100 1212 166 0 0 chr1 4357871 4358046 -277835618 + FAM SINE Alu 1 175 0 2165 82 32 0 chr1 4358049 4358330 -277835334 + AluSq SINE Alu 1 290 -23 257 0 30 0 chr1 4358334 4358367 -277835297 + (CAA)n Simple_repeat Simple_repeat 2 35 0 2601 180 25 44 chr1 4358367 4358883 -277834781 - L1MB2 LINE L1 -76 6095 5586 696 206 221 32 chr1 4359071 4359187 -277834477 - MER45C DNA AcHobo -628 953 860 1971 154 0 3 chr1 4359187 4359492 -277834172 - AluSx SINE Alu -8 304 1 696 206 221 32 chr1 4359492 4359628 -277834036 - MER45C DNA AcHobo -721 860 653 599 190 0 49 chr1 4359717 4359859 -277833805 - MER45C DNA AcHobo -764 189 55 219 296 114 0 chr1 4359863 4359951 -277833713 + MIR SINE MIR 52 149 -113 747 199 8 0 chr1 4359953 4360084 -277833580 + AluJo SINE Alu 1 132 -180 1741 151 3 7 chr1 4360179 4360463 -277833201 + AluJb SINE Alu 1 283 -29 2080 116 10 7 chr1 4361546 4361847 -277831817 - AluSx SINE Alu 0 312 11 226 274 145 16 chr1 4361855 4361979 -277831685 + MIR SINE MIR 49 188 -74 242 260 106 16 chr1 4363876 4363999 -277829665 - L2 LINE L2 -1 3271 3138 938 168 6 12 chr1 4364512 4364673 -277828991 + AluJo SINE Alu 123 282 -30 270 0 0 0 chr1 4364675 4364705 -277828959 + (GA)n Simple_repeat Simple_repeat 1 30 0 494 316 84 85 chr1 4364722 4365180 -277828484 + L1MEc LINE L1 982 1469 -1107 310 297 68 7 chr1 4365201 4365349 -277828315 + HAL1b LINE L1 386 542 -806 225 259 35 35 chr1 4367569 4367654 -277826010 - MIR3 SINE MIR -54 154 70 2009 136 7 0 chr1 4370079 4370380 -277823284 - AluSx SINE Alu -9 303 1 192 261 82 67 chr1 4370642 4370776 -277822888 - L2 LINE L2 -161 3111 2976 204 205 0 0 chr1 4373437 4373476 -277820188 + CT-rich Low_complexity Low_complexity 1 39 0 3160 217 42 40 chr1 4373793 4373857 -277819807 - L1MB7 LINE L1 -1 6183 6121 2213 81 0 10 chr1 4373857 4374154 -277819510 + AluSx SINE Alu 1 294 -18 3160 217 42 40 chr1 4374154 4374488 -277819176 - L1MB7 LINE L1 -63 6121 5789 2399 77 10 0 chr1 4374488 4374798 -277818866 - AluSq SINE Alu 0 313 1 3160 217 42 40 chr1 4374798 4375278 -277818386 - L1MB7 LINE L1 -395 5789 5302 338 314 41 8 chr1 4375426 4375547 -277818117 + MIR3 SINE MIR 13 137 -71 201 320 20 40 chr1 4375636 4375736 -277817928 - MIR3 SINE MIR -108 100 3 1586 116 0 4 chr1 4376669 4376894 -277816770 - AluSc SINE Alu -16 293 70 1334 94 0 0 chr1 4376894 4377064 -277816600 - AluSc SINE Alu -139 170 1 653 123 98 33 chr1 4377074 4377196 -277816468 - FLAM_C SINE Alu 0 133 4 341 322 90 0 chr1 4377248 4377425 -277816239 - L1MEd LINE L1 -3316 2813 2621 2173 122 0 0 chr1 4377425 4377721 -277815943 + AluSx SINE Alu 1 296 -16 381 297 0 11 chr1 4377722 4377813 -277815851 + L1MC4 LINE L1 6614 6703 -1339 301 246 0 0 chr1 4377837 4377894 -277815770 - L1MC4 LINE L1 -1339 6703 6647 312 321 32 23 chr1 4377921 4378188 -277815476 - L1MEd LINE L1 -3526 2603 2331 1403 112 225 4 chr1 4378188 4378437 -277815227 + AluYb8 SINE Alu 1 304 -14 312 321 32 23 chr1 4378437 4378515 -277815149 - L1MEd LINE L1 -3798 2331 2255 3650 186 43 52 chr1 4378515 4378588 -277815076 - L1MB7 LINE L1 0 6253 6181 2297 95 0 0 chr1 4378588 4378883 -277814781 + AluSq SINE Alu 1 295 -18 3650 186 43 52 chr1 4378883 4379182 -277814482 - L1MB7 LINE L1 -72 6181 5881 2013 124 0 10 chr1 4379182 4379472 -277814192 - AluJb SINE Alu -5 307 21 3650 186 43 52 chr1 4379472 4380035 -277813629 - L1MB7 LINE L1 -372 5881 5315 599 275 0 0 chr1 4380035 4380155 -277813509 - FLAM_A SINE Alu -13 120 1 3650 186 43 52 chr1 4380155 4380495 -277813169 - L1MB7 LINE L1 -938 5315 2113 455 256 33 92 chr1 4380842 4381306 -277812358 - L1MEd LINE L1 -4751 1559 955 427 328 35 39 chr1 4381319 4381551 -277812113 - L2 LINE L2 0 3313 3083 1764 213 97 8 chr1 4381679 4382153 -277811511 - MLT1E2 LTR MaLR 0 626 111 297 219 0 0 chr1 4382211 4382275 -277811389 - MLT1E2 LTR MaLR -582 72 9 1515 48 0 68 chr1 4382348 4382555 -277811109 - AluY SINE Alu -118 193 1 1911 91 0 0 chr1 4382560 4382803 -277810861 - AluSx SINE Alu -18 294 52 357 334 63 88 chr1 4382803 4382926 -277810738 - L1MEd LINE L1 -5197 922 797 1202 107 11 165 chr1 4382926 4383198 -277810466 - MER30 DNA MER1_type 0 230 1 357 334 63 88 chr1 4383198 4383319 -277810345 - L1MEd LINE L1 -5322 797 674 2389 60 0 17 chr1 4383319 4383618 -277810046 - AluSg SINE Alu -16 294 1 357 334 63 88 chr1 4383618 4383770 -277809894 - L1MEd LINE L1 -5445 674 535 326 370 47 53 chr1 4383823 4384142 -277809522 - L1MEd LINE L1 -5693 426 110 1762 159 7 3 chr1 4384153 4384443 -277809221 - AluJb SINE Alu -21 291 1 624 247 64 70 chr1 4385874 4386029 -277807635 - MLT1C LTR MaLR -125 342 188 2328 102 0 0 chr1 4386029 4386334 -277807330 - AluSx SINE Alu -7 305 1 2249 112 0 0 chr1 4386334 4386638 -277807026 - AluSx SINE Alu -8 304 1 624 247 64 70 chr1 4386638 4386793 -277806871 - MLT1C LTR MaLR -277 190 33 336 205 19 0 chr1 4388653 4388809 -277804855 + (TCCA)n Simple_repeat Simple_repeat 4 162 0 205 246 16 0 chr1 4388811 4388872 -277804792 + CT-rich Low_complexity Low_complexity 3 64 0 356 185 35 6 chr1 4388877 4389050 -277804614 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 342 182 47 0 chr1 4389085 4389233 -277804431 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 456 170 38 0 chr1 4389307 4389632 -277804032 + (TCCA)n Simple_repeat Simple_repeat 1 337 0 423 178 52 0 chr1 4389679 4390011 -277803653 + (TCCA)n Simple_repeat Simple_repeat 1 349 0 527 182 38 5 chr1 4390042 4390772 -277802892 + (TCCA)n Simple_repeat Simple_repeat 1 754 0 326 321 191 12 chr1 4399416 4399746 -277793918 + L2 LINE L2 2380 2768 -546 581 276 69 69 chr1 4399803 4400151 -277793513 + L2 LINE L2 2931 3278 -35 239 232 0 29 chr1 4401655 4401724 -277791940 + G-rich Low_complexity Low_complexity 2 68 0 575 284 57 44 chr1 4402487 4402716 -277790948 + MIR SINE MIR 17 248 -14 402 354 32 0 chr1 4402741 4402899 -277790765 - MIR SINE MIR -20 242 80 2161 106 0 13 chr1 4407584 4407885 -277785779 + AluSq SINE Alu 1 297 -16 287 329 73 18 chr1 4408178 4408342 -277785322 - MIR SINE MIR -82 180 8 261 0 0 0 chr1 4408853 4408882 -277784782 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1730 139 55 45 chr1 4408903 4409039 -277784625 + AluJo SINE Alu 1 134 -178 1771 147 25 73 chr1 4409039 4409366 -277784298 + AluJb SINE Alu 2 312 0 1730 139 55 45 chr1 4409366 4409538 -277784126 + AluJo SINE Alu 134 312 0 205 347 76 18 chr1 4411751 4411914 -277781750 - MIR SINE MIR -58 150 18 2096 106 20 0 chr1 4412758 4413050 -277780614 - AluSx SINE Alu -12 300 3 273 271 0 0 chr1 4413152 4413211 -277780453 + (TG)n Simple_repeat Simple_repeat 2 60 0 186 331 76 45 chr1 4415068 4415225 -277778439 + L3 LINE CR1 1280 1441 -136 233 330 104 0 chr1 4415631 4415693 -277777971 + L2 LINE L2 3152 3206 -66 1598 244 110 2 chr1 4415693 4416111 -277777553 + MLT1C LTR MaLR 1 463 -4 233 330 104 0 chr1 4416111 4416154 -277777510 + L2 LINE L2 3206 3268 -4 264 232 29 0 chr1 4416835 4416904 -277776760 - Charlie8 DNA MER1_type -2220 197 127 502 260 27 0 chr1 4417511 4417657 -277776007 - L1MC4a LINE L1 -1846 5962 5813 1394 153 66 35 chr1 4417693 4418040 -277775624 - L1MB3 LINE L1 -3 6180 5823 1836 128 4 0 chr1 4418050 4418315 -277775349 - AluSx SINE Alu -13 299 34 471 278 83 14 chr1 4418471 4418687 -277774977 + L2 LINE L2 2435 2665 -649 262 241 157 0 chr1 4418698 4418781 -277774883 + MER5A DNA MER1_type 11 106 -83 412 254 25 33 chr1 4418842 4418964 -277774700 + L2 LINE L2 2668 2788 -526 180 315 22 11 chr1 4419015 4419104 -277774560 + L2 LINE L2 2917 3006 -307 818 254 62 102 chr1 4419169 4419689 -277773975 + MLT1D LTR MaLR 1 499 -6 2175 96 0 7 chr1 4420385 4420677 -277772987 - AluSg SINE Alu -15 295 6 251 232 158 0 chr1 4420992 4421074 -277772590 + MIR SINE MIR 119 213 -49 882 185 29 0 chr1 4421475 4421648 -277772016 - MER58A DNA MER1_type 0 224 47 977 133 118 0 chr1 4421655 4421866 -277771798 + L1MB4 LINE L1 5945 6180 0 673 372 122 18 chr1 4421907 4422466 -277771198 - L3 LINE CR1 -627 950 334 2165 101 20 0 chr1 4422611 4422908 -277770756 - AluSx SINE Alu -9 303 1 352 329 81 33 chr1 4426721 4426931 -277766733 + MIR SINE MIR 12 231 -31 223 309 0 0 chr1 4429111 4429179 -277764485 - MIR SINE MIR -117 91 24 1960 146 0 3 chr1 4429543 4429838 -277763826 - AluSx SINE Alu -18 294 1 318 257 29 29 chr1 4433281 4433386 -277760278 + MER5A DNA MER1_type 33 137 -52 199 254 24 146 chr1 4433284 4433449 -277760215 - MER5A DNA MER1_type -24 165 21 * 2034 185 57 35 chr1 4433662 4433881 -277759783 + L1MB8 LINE L1 5614 5827 -351 2255 98 0 3 chr1 4433881 4434176 -277759488 + AluSx SINE Alu 7 300 -12 2034 185 57 35 chr1 4434176 4434270 -277759394 + L1MB8 LINE L1 5827 5917 -261 2007 95 32 18 chr1 4434270 4434555 -277759109 + AluSg SINE Alu 8 296 -14 2034 185 57 35 chr1 4434555 4434787 -277758877 + L1MB8 LINE L1 5917 6172 -6 205 384 20 10 chr1 4435005 4435104 -277758560 + L2 LINE L2 3168 3267 -5 2085 88 50 17 chr1 4435258 4435555 -277758109 - AluSp SINE Alu -6 307 1 21 0 0 0 chr1 4435728 4435749 -277757915 + AT_rich Low_complexity Low_complexity 1 21 0 508 212 38 2 chr1 4435909 4436092 -277757572 + MER20 DNA MER1_type 1 219 0 2308 86 0 10 chr1 4436663 4436966 -277756698 - AluSc SINE Alu -9 300 1 2024 148 3 0 chr1 4438096 4438407 -277755257 + AluJo SINE Alu 1 312 0 430 307 57 0 chr1 4439064 4439204 -277754460 - MIR SINE MIR -68 194 47 1422 237 58 29 chr1 4439263 4439412 -277754252 + MLT1C LTR MaLR 8 151 -316 1754 177 10 3 chr1 4439412 4439717 -277753947 - AluJb SINE Alu -5 307 1 1422 237 58 29 chr1 4439717 4440014 -277753650 + MLT1C LTR MaLR 151 467 0 425 294 107 19 chr1 4440695 4440987 -277752677 - L2 LINE L2 -238 3075 2750 2388 69 0 0 chr1 4441241 4441532 -277752132 + AluSx SINE Alu 1 291 -21 2097 134 0 0 chr1 4441934 4442232 -277751432 + AluSx SINE Alu 5 302 -10 407 230 75 12 chr1 4442378 4442553 -277751111 - MLT1C LTR MaLR 0 390 273 2105 94 31 44 chr1 4442553 4443002 -277750662 + MER51A LTR ERV1 1 534 -100 1706 110 0 0 chr1 4443002 4443238 -277750426 - AluSq SINE Alu -77 236 1 2105 94 31 44 chr1 4443238 4443338 -277750326 + MER51A LTR ERV1 534 634 0 571 201 35 46 chr1 4443400 4443513 -277750151 - MLT1C LTR MaLR -290 177 65 1491 169 143 0 chr1 4443513 4443786 -277749878 - AluJo SINE Alu 0 312 1 571 201 35 46 chr1 4443786 4443846 -277749818 - MLT1C LTR MaLR -402 65 6 404 318 9 0 chr1 4444220 4444327 -277749337 + L2 LINE L2 3205 3312 -1 806 101 40 20 chr1 4444669 4444817 -277748847 - MER53 DNA DNA -2 187 37 1846 158 0 13 chr1 4445143 4445446 -277748218 - AluJo SINE Alu -13 299 1 1932 137 6 19 chr1 4445449 4445764 -277747900 - AluSx SINE Alu -1 311 1 363 326 42 5 chr1 4446887 4447080 -277746584 + L1MC4a LINE L1 5725 5924 -1884 195 291 36 0 chr1 4447781 4447836 -277745828 + L2 LINE L2 3211 3267 -5 292 326 49 62 chr1 4448120 4448344 -277745320 + L2 LINE L2 3084 3304 -9 225 319 129 0 chr1 4449051 4449167 -277744497 + MIR SINE MIR 14 144 -118 269 265 43 26 chr1 4449802 4449919 -277743745 + L2 LINE L2 3186 3304 -9 253 305 63 52 chr1 4453079 4453253 -277740411 + L2 LINE L2 2915 3090 -182 846 264 60 35 chr1 4453344 4453758 -277739906 + MLT1H LTR MaLR 29 579 -16 183 333 14 0 chr1 4455037 4455106 -277738558 - MIR SINE MIR -58 150 81 232 102 41 0 chr1 4457202 4457251 -277736413 + (CAGA)n Simple_repeat Simple_repeat 1 51 0 1177 269 147 14 chr1 4457555 4458072 -277735592 + MLT1E LTR MaLR 6 591 -2 287 309 12 0 chr1 4458555 4458639 -277735025 + L2 LINE L2 3198 3282 -31 1669 140 0 76 chr1 4458991 4459306 -277734358 + AluJo SINE Alu 21 311 -1 2361 69 0 10 chr1 4459409 4459715 -277733949 + AluY SINE Alu 1 303 -8 346 140 0 0 chr1 4459725 4459782 -277733882 + AluS SINE Alu 1 57 -251 521 236 9 9 chr1 4460382 4460492 -277733172 - MER5A DNA MER1_type -79 110 1 945 213 20 0 chr1 4460525 4460722 -277732942 + MER58A DNA MER1_type 24 224 0 1803 282 169 35 chr1 4460732 4461065 -277732599 + L2 LINE L2 1329 1616 -1697 2261 107 0 0 chr1 4461065 4461365 -277732299 - AluSx SINE Alu -12 300 1 1803 282 169 35 chr1 4461365 4462777 -277730887 + L2 LINE L2 1616 3313 0 180 329 7 79 chr1 4463699 4463839 -277729825 - MIR SINE MIR -123 139 10 309 236 49 73 chr1 4463920 4464043 -277729621 - L1MC4 LINE L1 -4 8038 7919 661 226 10 0 chr1 4464070 4464374 -277729290 + (CA)n Simple_repeat Simple_repeat 1 307 0 697 311 126 17 chr1 4464390 4464907 -277728757 - L1MC4 LINE L1 -128 7914 7342 283 132 29 29 chr1 4464914 4464982 -277728682 + CT-rich Low_complexity Low_complexity 3 70 0 2159 112 13 0 chr1 4464984 4465287 -277728377 - AluSc SINE Alu -2 307 1 1767 180 0 7 chr1 4465676 4465981 -277727683 - AluJb SINE Alu -9 303 1 249 167 33 50 chr1 4466112 4466172 -277727492 + MIR3 SINE MIR 109 167 -41 262 238 0 0 chr1 4466578 4466641 -277727023 + MLT1H LTR MaLR 29 91 -458 570 208 0 0 chr1 4466641 4466790 -277726874 + (CA)n Simple_repeat Simple_repeat 1 149 0 301 260 0 39 chr1 4466793 4466870 -277726794 - L1MCa LINE L1 -4358 2068 1995 536 188 8 0 chr1 4466874 4467002 -277726662 + (CA)n Simple_repeat Simple_repeat 2 130 0 324 278 14 0 chr1 4467003 4467075 -277726589 - L1MCa LINE L1 -4359 2067 1995 266 180 16 0 chr1 4467076 4467137 -277726527 + (CA)n Simple_repeat Simple_repeat 2 63 0 236 196 0 0 chr1 4467170 4467216 -277726448 + MLT1I LTR MaLR 95 140 -269 404 190 41 22 chr1 4467813 4467925 -277725739 + MIR SINE MIR 46 153 -58 1881 96 4 15 chr1 4468282 4468552 -277725112 - AluSc SINE Alu -8 301 35 293 344 33 8 chr1 4468916 4469038 -277724626 + L2 LINE L2 3188 3312 -1 495 0 0 0 chr1 4470311 4470366 -277723298 + (CA)n Simple_repeat Simple_repeat 1 55 0 244 354 21 0 chr1 4471764 4471860 -277721804 - MIR SINE MIR -56 206 109 437 286 32 16 chr1 4472643 4472769 -277720895 - MIR3 SINE MIR -67 141 14 1700 159 9 38 chr1 4473202 4473344 -277720320 + AluJo SINE Alu 1 145 -167 2315 86 0 7 chr1 4473344 4473646 -277720018 + AluSq SINE Alu 1 300 -13 1700 159 9 38 chr1 4473646 4473823 -277719841 + AluJo SINE Alu 145 311 -1 4385 173 20 7 chr1 4473823 4474404 -277719260 + L1MB3 LINE L1 5179 5778 -405 2210 111 10 0 chr1 4474404 4474711 -277718953 + AluSx SINE Alu 1 310 -2 4385 173 20 7 chr1 4474711 4475067 -277718597 + L1MB3 LINE L1 5778 6128 -55 450 134 49 0 chr1 4476091 4476173 -277717491 + L1MB2 LINE L1 6086 6171 0 1764 149 3 17 chr1 4476310 4476598 -277717066 + AluJb SINE Alu 23 306 -6 2109 98 25 0 chr1 4476643 4476929 -277716735 + AluSx SINE Alu 18 310 -2 415 344 54 42 chr1 4477561 4477820 -277715844 - L3 LINE CR1 -152 1425 1164 269 314 98 36 chr1 4477994 4478188 -277715476 - L3 LINE CR1 -360 1217 1012 711 194 60 45 chr1 4478190 4478265 -277715399 + MER58B DNA MER1_type 1 73 -2347 1793 190 0 0 chr1 4478265 4478576 -277715088 - AluJo SINE Alu -1 311 1 711 194 60 45 chr1 4478576 4478701 -277714963 + MER58B DNA MER1_type 73 204 -2216 720 249 64 40 chr1 4478708 4478957 -277714707 - MLT1A2 LTR MaLR 0 374 120 983 126 0 31 chr1 4478958 4479117 -277714547 + AluJb SINE Alu 122 275 -37 520 113 94 0 chr1 4479117 4479223 -277714441 - MLT1A2 LTR MaLR -258 116 1 539 223 16 0 chr1 4479227 4479348 -277714316 + MER58B DNA MER1_type 211 333 -8 1374 175 13 89 chr1 4479349 4479663 -277714001 + AluJo SINE Alu 1 290 -22 1338 179 64 32 chr1 4479731 4479782 -277713882 + AluJo SINE Alu 1 49 -263 2075 85 18 0 chr1 4479782 4480064 -277713600 - AluSx SINE Alu -15 297 11 1338 179 64 32 chr1 4480064 4480146 -277713518 + AluJo SINE Alu 49 127 -185 297 0 0 0 chr1 4480146 4480179 -277713485 + (CA)n Simple_repeat Simple_repeat 2 34 0 1338 179 64 32 chr1 4480179 4480324 -277713340 + AluJo SINE Alu 127 289 -23 1945 112 18 7 chr1 4481584 4481869 -277711795 + AluJb SINE Alu 1 288 -24 213 39 0 0 chr1 4481877 4481903 -277711761 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1123 181 67 0 chr1 4482024 4482234 -277711430 - MER58A DNA MER1_type 0 224 1 2227 113 7 0 chr1 4482256 4482566 -277711098 + AluSx SINE Alu 1 312 0 455 258 27 59 chr1 4483475 4483661 -277710003 - MIR SINE MIR -49 213 34 272 332 132 18 chr1 4483747 4484081 -277709583 - L2 LINE L2 -638 2676 2305 390 359 122 15 chr1 4484087 4484430 -277709234 + L2 LINE L2 2892 3271 -1 418 266 3 6 chr1 4484753 4485067 -277708597 + (CCA)n Simple_repeat Simple_repeat 1 313 0 397 228 0 11 chr1 4485097 4485277 -277708387 + (CCA)n Simple_repeat Simple_repeat 2 179 0 329 225 0 22 chr1 4485295 4485477 -277708187 + (CCA)n Simple_repeat Simple_repeat 2 179 0 242 211 0 11 chr1 4485492 4485582 -277708082 + (CCA)n Simple_repeat Simple_repeat 1 89 0 727 194 0 8 chr1 4487141 4487270 -277706394 - FLAM_A SINE Alu -3 130 3 468 289 31 5 chr1 4487276 4487409 -277706255 - MER113 DNA MER1_type? -320 201 60 2082 135 0 19 chr1 4487409 4487727 -277705937 + AluSx SINE Alu 1 312 0 468 289 31 5 chr1 4487727 4487787 -277705877 - MER113 DNA MER1_type? -461 60 3 200 289 0 0 chr1 4488156 4488201 -277705463 + (CA)n Simple_repeat Simple_repeat 1 45 0 2170 87 10 17 chr1 4488948 4489247 -277704417 - AluSx SINE Alu -15 297 1 212 248 0 69 chr1 4490827 4490928 -277702736 + G-rich Low_complexity Low_complexity 3 96 0 * 279 168 52 75 chr1 4490855 4491028 -277702636 + (AGGTG)n Simple_repeat Simple_repeat 3 171 0 * 350 207 55 43 chr1 4490946 4491110 -277702554 + G-rich Low_complexity Low_complexity 3 168 0 253 254 36 24 chr1 4491071 4491236 -277702428 + (GAGTG)n Simple_repeat Simple_repeat 5 171 0 * 386 213 58 40 chr1 4491168 4491342 -277702322 + G-rich Low_complexity Low_complexity 3 179 0 372 218 58 40 chr1 4491405 4491579 -277702085 + G-rich Low_complexity Low_complexity 3 179 0 218 206 43 54 chr1 4491603 4491695 -277701969 + G-rich Low_complexity Low_complexity 3 93 0 329 246 39 50 chr1 4492118 4492297 -277701367 + C-rich Low_complexity Low_complexity 3 179 0 355 231 33 55 chr1 4492315 4492497 -277701167 + C-rich Low_complexity Low_complexity 3 180 0 258 250 29 57 chr1 4492515 4492655 -277701009 + C-rich Low_complexity Low_complexity 3 138 0 1256 214 101 34 chr1 4492776 4493183 -277700481 + MLT1C LTR MaLR 4 437 -30 799 197 0 0 chr1 4493226 4493358 -277700306 + FLAM_A SINE Alu 1 132 -1 350 359 139 40 chr1 4493764 4494065 -277699599 + L1MC/D LINE L1 5449 5779 -2029 191 318 0 30 chr1 4494510 4494576 -277699088 + MIR SINE MIR 37 100 -108 218 303 115 8 chr1 4495516 4495638 -277698026 - L2 LINE L2 -60 3212 3078 248 278 0 0 chr1 4495701 4495755 -277697909 + MIR3 SINE MIR 117 170 -38 377 66 16 0 chr1 4496228 4496289 -277697375 + (TG)n Simple_repeat Simple_repeat 1 62 0 192 77 0 0 chr1 4496910 4496936 -277696728 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 247 300 80 0 chr1 4498688 4498788 -277694876 + MIR SINE MIR 42 149 -113 187 335 58 48 chr1 4499351 4499557 -277694107 + L2 LINE L2 2830 3037 -235 206 283 17 0 chr1 4501753 4501813 -277691851 + MIR SINE MIR 73 133 -129 198 333 36 63 chr1 4502185 4502296 -277691368 + MIR3 SINE MIR 15 122 -86 237 306 14 35 chr1 4504499 4504643 -277689021 + G-rich Low_complexity Low_complexity 1 141 0 * 285 254 14 51 chr1 4504551 4504689 -277688975 + GA-rich Low_complexity Low_complexity 1 133 0 406 213 131 0 chr1 4506050 4506172 -277687492 - Charlie1 DNA MER1_type -287 2474 2337 208 341 159 0 chr1 4506259 4506391 -277687273 + L2 LINE L2 3161 3313 0 430 285 115 6 chr1 4506950 4507115 -277686549 + MIR SINE MIR 77 259 -3 183 229 0 21 chr1 4508165 4508213 -277685451 - L2 LINE L2 -210 3062 3016 435 207 9 17 chr1 4508253 4508369 -277685295 - MLT1D LTR MaLR 0 505 391 4315 204 89 3 chr1 4508923 4510036 -277683628 - Charlie1a DNA MER1_type -6 1449 241 422 311 99 0 chr1 4510079 4510240 -277683424 - Charlie1a DNA MER1_type -1278 177 1 255 312 91 0 chr1 4510682 4510759 -277682905 - MER91A DNA MER1_type -111 85 2 1480 182 163 0 chr1 4511502 4511815 -277681849 + MER47A DNA MER2_type 3 366 0 199 242 0 76 chr1 4512462 4512528 -277681136 - L2 LINE L2 -6 3266 3206 338 256 35 0 chr1 4512552 4512638 -277681026 - MIR SINE MIR -46 216 128 609 265 62 65 chr1 4512952 4513035 -277680629 - L1MC4a LINE L1 -1842 5966 5884 1969 125 7 7 chr1 4513035 4513332 -277680332 - AluSx SINE Alu -14 298 2 609 265 62 65 chr1 4513332 4513603 -277680061 - L1MC4a LINE L1 -1924 5884 5613 652 271 46 8 chr1 4513623 4513863 -277679801 + L1M4 LINE L1 2210 2458 -3688 1380 181 27 4 chr1 4513864 4514339 -277679325 - MER68 LTR ERV1 0 562 3 879 235 70 78 chr1 4514343 4515050 -277678614 + L1M4 LINE L1 2486 3197 -2949 1775 170 83 9 chr1 4515050 4515374 -277678290 - MER7A DNA MER2_type 0 346 1 879 235 70 78 chr1 4515374 4515899 -277677765 + L1M4 LINE L1 3197 3908 -2238 238 349 121 6 chr1 4516489 4516655 -277677009 - L2 LINE L2 -54 3259 3075 321 347 151 8 chr1 4516995 4517234 -277676430 + L2 LINE L2 2624 2896 -418 1245 257 47 32 chr1 4517234 4517767 -277675897 - MER74A LTR ERVL -4 554 14 1554 124 87 4 chr1 4517772 4518047 -277675617 + AluJb SINE Alu 1 298 -14 319 296 72 13 chr1 4518074 4518226 -277675438 + L2 LINE L2 2883 3043 -270 225 94 0 0 chr1 4518226 4518258 -277675406 + (CCCTG)n Simple_repeat Simple_repeat 3 34 0 379 237 61 69 chr1 4518271 4518402 -277675262 + L2 LINE L2 3184 3313 0 366 274 63 23 chr1 4518674 4518849 -277674815 - MLT1K LTR MaLR 0 588 407 326 105 0 18 chr1 4519656 4519713 -277673951 + (TCCCC)n Simple_repeat Simple_repeat 3 58 0 221 286 0 0 chr1 4519820 4519869 -277673795 + C-rich Low_complexity Low_complexity 4 52 0 209 313 198 0 chr1 4519869 4519965 -277673699 - MIR SINE MIR -116 146 32 278 383 120 22 chr1 4520060 4520384 -277673280 - L2 LINE L2 -5 3308 2953 281 342 79 26 chr1 4521343 4521495 -277672169 - MIR SINE MIR -5 257 98 1134 163 5 5 chr1 4524112 4524302 -277669362 - AluJo SINE Alu -16 296 107 931 106 0 87 chr1 4524498 4524528 -277669136 + L1PB1 LINE L1 6005 6036 -115 2110 132 7 3 chr1 4524528 4524838 -277668826 + AluSx SINE Alu 1 311 -1 931 106 0 87 chr1 4524838 4524968 -277668696 + L1PB1 LINE L1 6036 6151 0 252 304 13 0 chr1 4525120 4525199 -277668465 - L2 LINE L2 -5 3267 3188 342 167 15 0 chr1 4525251 4525317 -277668347 - MER20 DNA MER1_type -1 218 152 1803 172 7 3 chr1 4527190 4527493 -277666171 - AluJb SINE Alu -8 304 1 286 191 0 0 chr1 4528654 4528671 -277664993 - AluSq SINE Alu -136 167 151 1702 112 29 0 chr1 4528671 4528912 -277664752 - AluSx SINE Alu -13 299 52 286 191 0 0 chr1 4528912 4528957 -277664707 - AluSq SINE Alu -151 152 105 1775 172 3 0 chr1 4529099 4529395 -277664269 - AluSx SINE Alu -15 297 1 362 319 90 12 chr1 4529506 4529672 -277663992 + MIR SINE MIR 65 243 -19 285 263 40 0 chr1 4529668 4529744 -277663920 - L2 LINE L2 -5 3267 3189 * 1074 118 40 79 chr1 4529796 4530024 -277663640 - MER20 DNA MER1_type 0 219 1 1777 163 7 10 chr1 4531168 4531469 -277662195 + AluJb SINE Alu 1 300 -12 2015 168 23 5 chr1 4531527 4531925 -277661739 - MER72 LTR ERV1 0 722 318 883 187 49 0 chr1 4531958 4532161 -277661503 - MER72 LTR ERV1 -505 217 5 1955 138 10 0 chr1 4532483 4532773 -277660891 + AluJo SINE Alu 2 294 -18 355 285 46 39 chr1 4532774 4532904 -277660760 - L1MC4 LINE L1 -1339 6703 6573 377 288 30 0 chr1 4533550 4533682 -277659982 - L1MC4 LINE L1 -1908 5900 5765 2278 101 7 0 chr1 4533727 4534035 -277659629 + AluSx SINE Alu 1 310 -2 1926 114 73 0 chr1 4534304 4534576 -277659088 - AluSx SINE Alu -10 302 11 266 298 12 12 chr1 4534748 4534832 -277658832 + L3 LINE CR1 1417 1500 -77 890 199 0 6 chr1 4535371 4535559 -277658105 + FRAM SINE Alu 1 176 0 1662 178 45 116 chr1 4536278 4536813 -277656851 - L1MB3 LINE L1 -1 6182 5686 24 0 0 0 chr1 4538657 4538681 -277654983 + GC_rich Low_complexity Low_complexity 1 24 0 1756 155 6 54 chr1 4538838 4539005 -277654659 - AluJb SINE Alu -10 302 156 2276 104 7 0 chr1 4539005 4539302 -277654362 - AluSx SINE Alu -13 299 1 1756 155 6 54 chr1 4539302 4539451 -277654213 - AluJb SINE Alu -156 156 1 335 286 0 0 chr1 4539686 4539763 -277653901 - L2 LINE L2 -4 3309 3233 348 224 60 82 chr1 4540740 4540923 -277652741 + MIR SINE MIR 33 211 -51 220 290 30 2 chr1 4541086 4541162 -277652502 - MIR SINE MIR -105 103 25 4644 179 22 42 chr1 4541697 4543209 -277650455 - L1MA6 LINE L1 -23 6277 4800 647 281 115 0 chr1 4543367 4543733 -277649931 - L1ME4a LINE L1 -233 5888 5481 2257 113 3 6 chr1 4544310 4544621 -277649043 + AluSg SINE Alu 1 310 0 311 191 0 11 chr1 4545070 4545159 -277648505 + (TAGGG)n Simple_repeat Simple_repeat 3 90 0 440 276 44 22 chr1 4546647 4546872 -277646792 - L1ME3A LINE L1 -220 5950 5721 416 245 167 30 chr1 4546969 4547202 -277646462 - MLT1H LTR MaLR -188 361 97 244 108 0 0 chr1 4547573 4547610 -277646054 + U2 snRNA snRNA 1 37 -151 240 294 81 22 chr1 4548168 4548304 -277645360 + L2 LINE L2 3168 3311 -2 282 56 0 0 chr1 4548343 4548379 -277645285 + (TG)n Simple_repeat Simple_repeat 1 36 0 534 143 0 12 chr1 4550211 4550295 -277643369 + FLAM_A SINE Alu 40 122 -20 1254 168 74 1 chr1 4550734 4551164 -277642500 - MER21B LTR ERV1 -358 505 1 1037 134 85 27 chr1 4551506 4551729 -277641935 - Tigger7 DNA MER2_type -2 2489 2254 952 212 47 0 chr1 4551743 4551936 -277641728 - Tigger7 DNA MER2_type -2254 233 32 2013 129 31 0 chr1 4552731 4553025 -277640639 - AluSx SINE Alu -9 303 1 406 296 73 14 chr1 4553739 4553959 -277639705 - L1MC5 LINE L1 -107 7854 7622 655 268 136 68 chr1 4555032 4555160 -277638504 - L1MC4 LINE L1 -376 7666 7548 2496 80 0 0 chr1 4555160 4555462 -277638202 - AluY SINE Alu -9 302 1 655 268 136 68 chr1 4555462 4556083 -277637581 - L1MC4 LINE L1 -494 7548 6866 573 314 63 35 chr1 4556096 4557050 -277636614 - L1ME4a LINE L1 -816 5330 4350 421 222 10 10 chr1 4557154 4557253 -277636411 - L1MD1 LINE L1 -1 6241 6143 1709 175 104 19 chr1 4557253 4557618 -277636046 - MSTD LTR MaLR 0 396 1 3571 105 18 0 chr1 4558556 4559061 -277634603 + MER75 DNA T2_type 1 514 0 338 325 25 12 chr1 4560315 4560478 -277633186 - MLT1D LTR MaLR 0 505 341 569 272 82 22 chr1 4560579 4560943 -277632721 - MLT1D LTR MaLR -119 386 1 2302 105 0 0 chr1 4561824 4562119 -277631545 - AluSx SINE Alu -17 295 1 2345 126 57 94 chr1 4565321 4565626 -277628038 + Tigger1 DNA MER2_type 1896 2211 -207 1790 174 7 0 chr1 4565626 4565914 -277627750 - AluJo SINE Alu -17 295 6 2345 126 57 94 chr1 4565914 4565953 -277627711 + Tigger1 DNA MER2_type 2211 2250 -168 2210 123 20 0 chr1 4565953 4566254 -277627410 - AluSx SINE Alu -5 307 1 2345 126 57 94 chr1 4566254 4566450 -277627214 + Tigger1 DNA MER2_type 2250 2417 -1 8246 228 49 34 chr1 4566450 4569104 -277624560 + L1M4 LINE L1 2137 4832 -1314 1390 236 114 43 chr1 4569092 4569609 -277624055 + L1MD2 LINE L1 5567 6120 -239 * 628 178 138 13 chr1 4571142 4571294 -277622370 + MER2 DNA MER2_type 159 329 -16 2444 67 0 0 chr1 4571797 4572109 -277621555 + AluY SINE Alu 1 312 0 21 0 0 0 chr1 4572168 4572189 -277621475 + AT_rich Low_complexity Low_complexity 1 21 0 1657 133 130 7 chr1 4572281 4572574 -277621090 + MER2 DNA MER2_type 2 330 -15 1983 161 0 3 chr1 4572756 4573060 -277620604 + AluJb SINE Alu 1 303 -9 2863 246 161 22 chr1 4573316 4574489 -277619175 - L1MEc LINE L1 -5029 1367 32 940 195 12 0 chr1 4574693 4574862 -277618802 - FRAM SINE Alu -8 168 1 803 175 35 14 chr1 4575005 4575148 -277618516 - AluJo SINE Alu -141 171 26 21 0 0 0 chr1 4575148 4575169 -277618495 + AT_rich Low_complexity Low_complexity 1 21 0 359 297 72 7 chr1 4575175 4575313 -277618351 + L1ME LINE L1 4669 4815 -1331 1902 163 132 37 chr1 4575348 4575809 -277617855 - MLT1D LTR MaLR 0 505 1 312 343 30 54 chr1 4575820 4575986 -277617678 + L1ME LINE L1 4904 5065 -1081 382 319 104 8 chr1 4576066 4576354 -277617310 + L1ME LINE L1 5332 5641 -521 269 111 44 0 chr1 4576655 4576700 -277616964 + MIR SINE MIR 98 144 -118 497 253 25 81 chr1 4576700 4577060 -277616604 + L1M4 LINE L1 4995 5334 -812 1756 131 3 122 chr1 4577351 4577481 -277616183 + AluJo SINE Alu 1 145 -157 1460 174 7 18 chr1 4577481 4577763 -277615901 + AluSc SINE Alu 1 279 -30 1756 131 3 122 chr1 4577763 4577975 -277615689 + AluJo SINE Alu 145 302 0 266 236 0 0 chr1 4578159 4578214 -277615450 - L2 LINE L2 -5 3267 3213 408 193 76 17 chr1 4578285 4578404 -277615260 + L1MC1 LINE L1 6191 6316 -17 623 316 112 49 chr1 4578429 4578514 -277615150 - L1 LINE L1 -2407 3739 3661 1002 221 72 0 chr1 4578514 4578722 -277614942 - MER58A DNA MER1_type -1 223 1 623 316 112 49 chr1 4578722 4579395 -277614269 - L1 LINE L1 -2485 3661 2890 745 280 92 9 chr1 4579622 4579970 -277613694 - MLT1I LTR MaLR -1 449 23 232 237 105 13 chr1 4580025 4580101 -277613563 + L2 LINE L2 3226 3308 -5 898 191 54 112 chr1 4580101 4580415 -277613249 - MLT1K LTR MaLR 0 588 293 961 102 16 0 chr1 4580858 4580985 -277612679 - AluSq/x SINE Alu -183 129 1 1610 197 0 45 chr1 4583266 4583575 -277610089 - AluJb SINE Alu -17 295 1 1679 83 0 0 chr1 4584541 4584758 -277608906 - AluSq SINE Alu -10 303 87 2584 55 0 0 chr1 4585138 4585449 -277608215 - AluY SINE Alu 0 311 1 789 247 18 0 chr1 4589802 4589972 -277603692 - MIR SINE MIR -9 253 81 979 182 44 0 chr1 4591638 4591819 -277601845 - MER53 DNA DNA 0 189 1 1662 234 62 77 chr1 4593272 4594218 -277599446 - L1MC5 LINE L1 -169 7792 6861 376 325 60 65 chr1 4594357 4595146 -277598518 + L1M4 LINE L1 2378 3162 -2984 4656 187 57 16 chr1 4596497 4596641 -277597023 - L1MC2 LINE L1 -1 6343 6206 1926 147 3 16 chr1 4596641 4596947 -277596717 - AluJb SINE Alu 0 312 11 4656 187 57 16 chr1 4596947 4598115 -277595549 - L1MC2 LINE L1 -138 6206 4967 857 325 109 19 chr1 4598111 4598834 -277594830 - L1ME3A LINE L1 -67 6103 5316 * 209 83 28 0 chr1 4598834 4598870 -277594794 + (TG)n Simple_repeat Simple_repeat 1 37 0 666 285 107 87 chr1 4599792 4601704 -277591960 - L1MC4 LINE L1 -143 7899 5860 260 329 84 21 chr1 4601824 4601967 -277591697 - L1MC4 LINE L1 -1969 5839 5688 1251 139 0 0 chr1 4602176 4602363 -277591301 - AluSg/x SINE Alu 0 310 124 3681 49 7 0 chr1 4602363 4602813 -277590851 - L1PA4 LINE L1 -1 6154 5702 900 292 62 54 chr1 4602858 4603231 -277590433 - L1M4 LINE L1 -2916 3230 2855 1241 171 19 0 chr1 4603234 4603450 -277590214 - AluJb SINE Alu -8 304 85 483 283 54 30 chr1 4603452 4603535 -277590129 - L1M4 LINE L1 -3322 2824 2744 8247 60 4 5 chr1 4603535 4604543 -277589121 + LTR13 LTR ERVK 1 1007 0 483 283 54 30 chr1 4604543 4604625 -277589039 - L1M4 LINE L1 -3402 2744 2655 223 289 67 83 chr1 4605177 4605357 -277588307 - L2 LINE L2 0 3272 3096 640 105 0 0 chr1 4605414 4605509 -277588155 - L1P LINE L1 -6007 139 45 208 268 146 0 chr1 4607942 4608065 -277585599 + L2 LINE L2 3105 3245 -27 184 151 208 57 chr1 4615781 4615834 -277577830 + L2 LINE L2 3193 3253 -60 288 130 0 0 chr1 4617468 4617514 -277576150 + (TG)n Simple_repeat Simple_repeat 1 46 0 687 137 0 0 chr1 4617616 4617740 -277575924 + (TG)n Simple_repeat Simple_repeat 1 124 0 389 331 42 0 chr1 4618502 4618644 -277575020 - MIR3 SINE MIR -49 159 12 438 259 12 42 chr1 4620594 4620760 -277572904 - MER5B DNA MER1_type -28 161 1 301 238 0 12 chr1 4625630 4625710 -277567954 - L1MC5 LINE L1 -187 7774 7696 445 285 91 0 chr1 4626007 4626193 -277567471 - L1MC5 LINE L1 -779 7182 6980 3025 270 108 28 chr1 4626334 4627806 -277565858 - L1MD3 LINE L1 0 8039 6461 614 243 4 6 chr1 4628211 4628721 -277564943 + (TG)n Simple_repeat Simple_repeat 1 509 0 488 242 7 0 chr1 4628735 4628888 -277564776 + (TG)n Simple_repeat Simple_repeat 1 154 0 247 265 48 0 chr1 4628890 4628973 -277564691 + (CATG)n Simple_repeat Simple_repeat 4 90 0 348 259 0 0 chr1 4628973 4629108 -277564556 + (TG)n Simple_repeat Simple_repeat 2 136 0 267 336 39 0 chr1 4631594 4631698 -277561966 - L3b LINE CR1 -331 1252 1145 217 362 143 0 chr1 4636094 4636290 -277557374 - L2 LINE L2 -508 2806 2583 880 261 64 16 chr1 4636307 4636621 -277557043 - MLT1J LTR MaLR -18 493 165 1255 244 138 14 chr1 4640609 4641023 -277552641 + MLT1C LTR MaLR 3 467 0 625 275 39 14 chr1 4642527 4642734 -277550930 - MLT1K LTR MaLR -16 572 361 2438 121 8 32 chr1 4643343 4643716 -277549948 + THE1B LTR MaLR 1 364 0 519 306 144 4 chr1 4644175 4644479 -277549185 + L2 LINE L2 2741 3083 -230 558 264 110 50 chr1 4644921 4645285 -277548379 + MLT1H LTR MaLR 155 540 -9 2085 122 148 16 chr1 4645570 4645948 -277547716 - MSTA LTR MaLR 0 428 1 186 118 0 0 chr1 4645968 4646002 -277547662 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 341 236 6 0 chr1 4647741 4647915 -277545749 + (TG)n Simple_repeat Simple_repeat 2 176 0 226 232 0 36 chr1 4648860 4648916 -277544748 + L2 LINE L2 3254 3307 -6 1439 194 56 24 chr1 4648966 4649167 -277544497 - MLT1A1 LTR MaLR 0 365 147 1847 147 0 66 chr1 4649167 4649379 -277544285 - AluJb SINE Alu 0 312 128 2389 68 0 0 chr1 4649379 4649673 -277543991 + AluY SINE Alu 1 294 -17 1847 147 0 66 chr1 4649673 4649794 -277543870 - AluJb SINE Alu -184 128 1 1439 194 56 24 chr1 4649794 4649932 -277543732 - MLT1A1 LTR MaLR -218 147 15 369 324 81 23 chr1 4650511 4650708 -277542956 - MIR SINE MIR -14 248 43 230 148 21 43 chr1 4650751 4650824 -277542840 - MER91 DNA MER1_type -126 70 1 229 360 23 0 chr1 4651213 4651299 -277542365 - MIR SINE MIR -98 164 77 191 174 0 65 chr1 4651998 4652044 -277541620 + MIR SINE MIR 96 138 -124 299 357 65 11 chr1 4652153 4652338 -277541326 + MIR SINE MIR 66 260 -2 1052 273 68 5 chr1 4652811 4653195 -277540469 + MLT2D LTR ERVL 7 414 0 271 275 43 72 chr1 4653737 4653875 -277539789 - MIR3 SINE MIR -72 136 3 237 176 39 78 chr1 4655236 4655338 -277538326 - MLT1H LTR MaLR -33 516 419 2355 88 0 0 chr1 4655890 4656195 -277537469 - AluSx SINE Alu -7 305 1 533 143 11 0 chr1 4657421 4657512 -277536152 + L1MB7 LINE L1 5886 5977 -207 251 83 0 0 chr1 4657518 4657554 -277536110 - MLT2C2 LTR ERVL 0 464 429 231 204 0 0 chr1 4657643 4657697 -277535967 + (TG)n Simple_repeat Simple_repeat 1 54 0 742 218 38 144 chr1 4658001 4658396 -277535268 - MER51C LTR ERV1 0 640 288 728 305 128 31 chr1 4659866 4660381 -277533283 + MLT1K LTR MaLR 14 578 -10 587 340 22 19 chr1 4661787 4662102 -277531562 - ERVL LTR ERVL -422 5342 5027 857 104 22 0 chr1 4662103 4662237 -277531427 - MER4B LTR ERV1 0 610 474 245 87 0 22 chr1 4662239 4662285 -277531379 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 6848 26 5 1 chr1 4662285 4663805 -277529859 - L1PA3 LINE L1 -24 6131 4608 2484 93 49 60 chr1 4663805 4664024 -277529640 - MER4B LTR ERV1 -129 481 261 2102 117 13 0 chr1 4664024 4664324 -277529340 - AluSx SINE Alu -8 304 1 2484 93 49 60 chr1 4664324 4664566 -277529098 - MER4B LTR ERV1 -349 261 23 2254 114 0 0 chr1 4664566 4664873 -277528791 - AluSq SINE Alu -6 307 1 2484 93 49 60 chr1 4664873 4664896 -277528768 - MER4B LTR ERV1 -587 23 1 529 305 80 5 chr1 4665140 4665353 -277528311 - ERVL LTR ERVL -1151 4613 4385 494 296 32 16 chr1 4665452 4665641 -277528023 - ERVL LTR ERVL -1524 4240 4049 792 369 38 19 chr1 4665755 4666541 -277527123 - ERVL LTR ERVL -1898 3866 3066 198 103 0 0 chr1 4666807 4666836 -277526828 + (TC)n Simple_repeat Simple_repeat 1 29 0 1785 129 58 0 chr1 4666836 4667114 -277526550 - AluSx SINE Alu -1 311 18 285 352 61 19 chr1 4667121 4667547 -277526117 - ERVL LTR ERVL -2879 2885 2422 480 351 53 1 chr1 4667652 4667970 -277525694 - ERVL LTR ERVL -2762 2234 1899 1027 257 68 31 chr1 4668059 4668516 -277525148 + MLT1H LTR MaLR 1 549 0 3875 134 17 26 chr1 4668874 4669341 -277524323 - MER50 LTR ERV1 -23 711 252 2392 107 13 43 chr1 4669341 4669716 -277523948 - THE1B LTR MaLR 0 364 1 3875 134 17 26 chr1 4669716 4669966 -277523698 - MER50 LTR ERV1 -482 252 1 721 278 28 0 chr1 4672262 4672474 -277521190 + MIR SINE MIR 45 262 0 25 0 0 0 chr1 4672499 4672524 -277521140 + GC_rich Low_complexity Low_complexity 1 25 0 609 244 38 38 chr1 4673263 4673501 -277520163 - LTR37B LTR ERV1 -27 441 204 407 130 0 130 chr1 4673888 4673914 -277519750 - MADE1 DNA Mariner 0 80 52 2452 67 0 0 chr1 4673914 4674214 -277519450 + AluY SINE Alu 1 300 -11 407 130 0 130 chr1 4674214 4674279 -277519385 - MADE1 DNA Mariner -28 52 1 328 282 42 33 chr1 4674998 4675211 -277518453 + MER113 DNA MER1_type? 9 223 -298 241 173 0 67 chr1 4675287 4675362 -277518302 + CT-rich Low_complexity Low_complexity 3 72 0 1378 165 53 8 chr1 4676466 4676709 -277516955 + AluJo SINE Alu 1 254 -58 1086 178 28 19 chr1 4676782 4676995 -277516669 + AluJb SINE Alu 91 305 -7 359 31 0 137 chr1 4678397 4678701 -277514963 + (CCCCAG)n Simple_repeat Simple_repeat 1 262 0 257 304 33 0 chr1 4678780 4678872 -277514792 - MER21B LTR ERV1 -767 96 2 256 328 56 16 chr1 4679526 4679651 -277514013 + MIR SINE MIR 60 189 -73 220 345 95 0 chr1 4680807 4680923 -277512741 + MIR3 SINE MIR 32 158 -50 5227 121 22 2 chr1 4880945 4881985 -277311679 - L1PA15 LINE L1 -87 6078 5021 252 0 0 0 chr1 4881985 4882013 -277311651 + (T)n Simple_repeat Simple_repeat 1 28 0 371 360 35 38 chr1 4882077 4882391 -277311273 - L1 LINE L1 -1124 5022 4710 515 67 33 11 chr1 4882498 4882588 -277311076 + (TCC)n Simple_repeat Simple_repeat 1 92 0 1598 148 4 34 chr1 4882606 4882870 -277310794 - AluJb SINE Alu -49 263 8 415 173 0 27 chr1 4883168 4883243 -277310421 + AluS SINE Alu 1 73 -240 1377 252 78 9 chr1 4883284 4883721 -277309943 - MLT1C LTR MaLR 0 467 1 1700 204 18 18 chr1 4884806 4885189 -277308475 - MER89 LTR ERV1 -2 557 175 202 293 0 0 chr1 4885203 4885261 -277308403 - L2 LINE L2 -1333 1981 1924 359 270 43 74 chr1 4885287 4885517 -277308147 - L2 LINE L2 -1487 1827 1605 786 232 102 68 chr1 4885561 4885945 -277307719 + MLT1C LTR MaLR 6 402 -65 519 132 0 13 chr1 4886045 4886121 -277307543 - AluJ/FLAM SINE Alu -236 76 2 237 315 41 14 chr1 4886123 4886269 -277307395 + L1MC4a LINE L1 6418 6567 -1241 685 282 146 15 chr1 4886300 4886630 -277307034 + L1MC4 LINE L1 6916 7288 -754 1442 290 83 6 chr1 4886732 4887277 -277306387 + L1MC4 LINE L1 7456 8042 0 2372 94 0 7 chr1 4887300 4887608 -277306056 + AluY SINE Alu 1 306 -5 220 258 245 52 chr1 4887994 4888118 -277305546 - MIR SINE MIR -71 137 8 983 236 218 21 chr1 4890277 4890395 -277303269 - MLT1C LTR MaLR 0 467 374 2122 138 13 45 chr1 4890395 4890632 -277303032 + THE1B LTR MaLR 1 223 -141 2294 109 3 0 chr1 4890632 4890926 -277302738 + AluSp SINE Alu 1 295 -18 2122 138 13 45 chr1 4890926 4891064 -277302600 + THE1B LTR MaLR 223 364 0 983 236 218 21 chr1 4891064 4891330 -277302334 - MLT1C LTR MaLR -93 374 7 458 232 129 0 chr1 4891540 4891695 -277301969 + MER96 DNA MER1_type 1 175 0 2481 18 0 7 chr1 4891911 4892188 -277301476 - AluYb8 SINE Alu -2 316 42 1871 170 66 28 chr1 4893172 4893704 -277299960 + MLT2A2 LTR ERVL 1 553 -1 920 154 6 0 chr1 4894393 4894568 -277299096 + (CAT)n Simple_repeat Simple_repeat 3 178 0 263 207 37 0 chr1 4894630 4894712 -277298952 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 268 185 0 19 chr1 4896288 4896342 -277297322 + MIR SINE MIR 94 146 -62 207 326 61 10 chr1 4897162 4897260 -277296404 + MIR SINE MIR 51 153 -109 305 297 79 44 chr1 4897299 4897528 -277296136 + L2 LINE L2 1816 2052 -1262 992 200 14 113 chr1 4897530 4897900 -277295764 - MLT1A2 LTR MaLR -41 333 1 280 294 78 17 chr1 4898318 4898498 -277295166 + L2 LINE L2 2375 2565 -749 1179 253 99 20 chr1 4898980 4899426 -277294238 - MER89 LTR ERV1 0 559 79 306 293 104 109 chr1 4899609 4899947 -277293717 - L1MDb LINE L1 -5697 712 377 378 206 41 0 chr1 4900389 4900486 -277293178 - MER89 LTR ERV1 -458 101 1 297 200 22 67 chr1 4900678 4900858 -277292806 + (TTGTG)n Simple_repeat Simple_repeat 5 176 0 360 171 40 57 chr1 4900877 4901052 -277292612 + (CTGTG)n Simple_repeat Simple_repeat 3 174 0 322 194 39 56 chr1 4901137 4901317 -277292347 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 713 246 110 75 chr1 4902049 4902532 -277291132 - MLT2B1 LTR ERVL 0 520 21 236 306 0 14 chr1 4904704 4904776 -277288888 + L2 LINE L2 3201 3271 -1 1907 124 61 164 chr1 4905505 4905982 -277287682 - MSTA LTR MaLR 0 428 1 1596 228 85 7 chr1 4906178 4906626 -277287038 - LTR53 LTR ERVL -14 505 23 2270 102 0 3 chr1 4906628 4906922 -277286742 + AluSx SINE Alu 1 293 -19 279 79 0 0 chr1 4906922 4906960 -277286704 + (TA)n Simple_repeat Simple_repeat 2 39 0 319 320 132 48 chr1 4907080 4907330 -277286334 + LTR16A1 LTR ERVL 187 457 0 387 325 49 25 chr1 4907347 4907510 -277286154 - MIR SINE MIR -31 231 65 456 173 13 0 chr1 4907513 4907588 -277286076 + AluJ/FLAM SINE Alu 2 77 -235 230 263 11 0 chr1 4907695 4907870 -277285794 + C-rich Low_complexity Low_complexity 1 177 0 342 282 12 0 chr1 4907881 4908145 -277285519 + C-rich Low_complexity Low_complexity 1 267 0 298 316 74 0 chr1 4908315 4908410 -277285254 + MIR SINE MIR 35 136 -72 495 216 123 43 chr1 4908489 4908651 -277285013 + MER5B DNA MER1_type 1 175 -3 385 213 25 65 chr1 4908807 4908978 -277284686 + MLT1C LTR MaLR 7 165 -346 1177 225 109 44 chr1 4908981 4909412 -277284252 + MLT1C LTR MaLR 1 459 -8 622 246 73 18 chr1 4909442 4909662 -277284002 + MLT1C LTR MaLR 202 433 -34 1134 239 141 10 chr1 4909892 4910289 -277283375 - MLT1C LTR MaLR -15 452 4 2290 90 3 0 chr1 4911221 4911510 -277282154 + AluSg SINE Alu 1 290 -20 546 207 155 1 chr1 4911897 4912026 -277281638 - MLT1C LTR MaLR -4 481 347 978 219 38 19 chr1 4912215 4912535 -277281129 - MLT1C LTR MaLR -141 326 1 429 276 0 0 chr1 4912552 4912650 -277281014 + MIR SINE MIR 106 203 -59 293 259 144 73 chr1 4913475 4913614 -277280050 + MLT1I LTR MaLR 1 129 -280 2278 118 0 0 chr1 4913614 4913911 -277279753 - AluSg1 SINE Alu -12 297 1 293 259 144 73 chr1 4913911 4914153 -277279511 + MLT1I LTR MaLR 129 409 0 1924 221 47 10 chr1 4914265 4914750 -277278914 + MLT1D LTR MaLR 1 503 -2 3480 129 30 38 chr1 4914806 4915410 -277278254 - MER4A LTR ERV1 -1 599 1 2417 99 0 0 chr1 4915780 4916084 -277277580 + AluSx SINE Alu 1 304 -8 2206 111 21 0 chr1 4917210 4917498 -277276166 - AluSx SINE Alu -18 294 1 25 31 0 0 chr1 4917822 4917854 -277275810 + AT_rich Low_complexity Low_complexity 1 32 0 522 167 74 105 chr1 4917854 4917963 -277275701 - L1MB2 LINE L1 -2 6169 6065 1864 145 3 41 chr1 4917963 4918281 -277275383 - AluSq SINE Alu -7 306 1 522 167 74 105 chr1 4918281 4918333 -277275331 - L1MB2 LINE L1 -106 6065 6013 358 285 95 34 chr1 4918449 4918628 -277275036 - L1ME3A LINE L1 -208 5962 5773 718 292 102 54 chr1 4918637 4918848 -277274816 - L1ME3A LINE L1 -684 5480 5280 2274 97 10 0 chr1 4918848 4919138 -277274526 - AluSg SINE Alu -17 293 1 718 292 102 54 chr1 4919138 4919482 -277274182 - L1ME3A LINE L1 -884 5280 3426 434 202 53 48 chr1 4919516 4919704 -277273960 + L1M4 LINE L1 5023 5211 -935 1293 176 90 14 chr1 4919986 4920289 -277273375 + MER61B LTR ERV1 1 425 0 5309 92 17 1 chr1 4920768 4921550 -277272114 + L1PB1 LINE L1 5352 6145 -6 1784 219 32 50 chr1 4921699 4921987 -277271677 - MLT1C LTR MaLR 0 467 190 2298 58 17 17 chr1 4921987 4922278 -277271386 - AluY SINE Alu -20 291 1 1784 219 32 50 chr1 4922278 4922464 -277271200 - MLT1C LTR MaLR -277 190 2 1495 169 4 4 chr1 4922702 4922967 -277270697 - AluJb SINE Alu 0 304 40 494 183 78 0 chr1 4923094 4923209 -277270455 + MLT1A1 LTR MaLR 242 365 0 284 209 151 93 chr1 4923414 4923444 -277270220 + MLT-int LTR MaLR 972 999 -736 2283 104 57 28 chr1 4923444 4923798 -277269866 + THE1B LTR MaLR 1 364 0 284 209 151 93 chr1 4923798 4923906 -277269758 + MLT-int LTR MaLR 999 1118 -617 1874 218 67 14 chr1 4923928 4924360 -277269304 + MLT1A1-int LTR MaLR 1267 1721 -14 1838 197 46 3 chr1 4924376 4924726 -277268938 + MLT1A1 LTR MaLR 1 365 0 514 317 94 20 chr1 4924988 4925555 -277268109 - L1MB2 LINE L1 -277 5897 5283 212 299 11 23 chr1 4925614 4925701 -277267963 + CT-rich Low_complexity Low_complexity 3 88 0 237 240 85 39 chr1 4925987 4926116 -277267548 + MLT1J1 LTR MaLR 80 214 -232 1177 260 108 42 chr1 4926283 4926334 -277267330 - L1ME LINE L1 -616 5550 5504 2818 103 0 5 chr1 4926334 4926711 -277266953 - THE1C LTR MaLR 0 375 1 1177 260 108 42 chr1 4926711 4927018 -277266646 - L1ME LINE L1 -662 5504 5218 1763 179 14 7 chr1 4927018 4927314 -277266350 - AluJb SINE Alu -14 298 1 1177 260 108 42 chr1 4927314 4927931 -277265733 - L1ME LINE L1 -948 5218 4502 950 142 45 102 chr1 4927940 4928185 -277265479 + MSTB2 LTR MaLR 1 231 -201 1764 201 36 27 chr1 4928185 4928732 -277264932 + MLT2A2 LTR ERVL 1 546 -8 806 160 43 27 chr1 4928739 4928926 -277264738 + MSTB2 LTR MaLR 243 432 0 21 57 0 0 chr1 4928945 4928980 -277264684 + AT_rich Low_complexity Low_complexity 1 35 0 1195 276 66 65 chr1 4928988 4929128 -277264536 - L1ME LINE L1 -1714 4432 4294 221 0 35 0 chr1 4929128 4929157 -277264507 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2058 126 0 4 chr1 4929162 4929440 -277264224 - AluSx SINE Alu -35 277 1 1195 276 66 65 chr1 4929440 4930245 -277263419 - L1ME LINE L1 -1855 4291 3480 * 2441 233 51 47 chr1 4930241 4931061 -277262603 - L1ME2 LINE L1 -8 6225 5410 1516 212 123 0 chr1 4931061 4931386 -277262278 + MLT1A1 LTR MaLR 1 365 0 2441 233 51 47 chr1 4931386 4931452 -277262212 - L1ME2 LINE L1 -823 5410 5346 225 0 0 0 chr1 4931452 4931477 -277262187 + (CA)n Simple_repeat Simple_repeat 1 25 0 2441 233 51 47 chr1 4931477 4931749 -277261915 - L1ME2 LINE L1 -887 5346 5052 * 3188 219 49 58 chr1 4931748 4932389 -277261275 - L1MC/D LINE L1 -743 5403 4758 16889 30 6 1 chr1 4932389 4935144 -277258520 - L1PA3 LINE L1 -3 6152 3389 3188 219 49 58 chr1 4935144 4936103 -277257561 - L1MC/D LINE L1 -1388 4758 3811 1850 143 118 0 chr1 4936105 4936420 -277257244 + MER47A DNA MER2_type 15 366 0 1556 271 11 4 chr1 4936420 4936877 -277256787 - L1MC/D LINE L1 -2423 3723 3264 1975 217 39 30 chr1 4937400 4937814 -277255850 - L1ME2 LINE L1 -1824 4391 3969 3012 125 7 9 chr1 4937814 4938263 -277255401 - MER83 LTR ERV1 0 448 1 1975 217 39 30 chr1 4938263 4938391 -277255273 - L1ME2 LINE L1 -2246 3969 3844 364 291 64 20 chr1 4938383 4938634 -277255030 - L1ME2 LINE L1 -4181 2036 1775 * 542 239 164 39 chr1 4938647 4939262 -277254402 - L1ME2 LINE L1 -4579 1817 877 620 320 92 52 chr1 4939364 4939725 -277253939 - L1ME2 LINE L1 -5514 882 537 2052 129 7 26 chr1 4939725 4940027 -277253637 - AluSg SINE Alu -9 301 6 620 320 92 52 chr1 4940027 4940461 -277253203 - L1ME2 LINE L1 -5859 537 55 185 333 0 0 chr1 4940488 4940545 -277253119 + L2 LINE L2 2691 2747 -567 2311 157 34 31 chr1 4940613 4941160 -277252504 + MLT2A2 LTR ERVL 1 554 0 320 250 27 18 chr1 4941382 4941494 -277252170 - MIR SINE MIR -2 260 148 23 42 0 21 chr1 4941616 4941637 -277252027 + AT_rich Low_complexity Low_complexity 1 21 -26 2333 97 3 3 chr1 4941637 4941945 -277251719 + AluSp SINE Alu 3 310 -3 23 42 0 21 chr1 4941945 4941971 -277251693 + AT_rich Low_complexity Low_complexity 21 47 0 2513 319 48 15 chr1 4942749 4943826 -277249838 + HERV16 LTR ERVL 2092 3222 -1901 333 269 75 0 chr1 4944296 4944389 -277249275 + L2 LINE L2 3211 3310 -3 456 209 74 34 chr1 4944389 4944537 -277249127 + MER103 DNA DNA 13 166 0 942 207 18 0 chr1 4945050 4945214 -277248450 - FAM SINE Alu -6 169 3 1749 147 8 0 chr1 4945549 4945815 -277247849 - THE1C LTR MaLR 0 375 108 10384 131 28 6 chr1 4945819 4947348 -277246316 + THE1C-int LTR MaLR 19 1580 0 2238 127 21 29 chr1 4947348 4947726 -277245938 + THE1C LTR MaLR 1 375 0 261 258 77 0 chr1 4948140 4948236 -277245428 + MIR SINE MIR 59 163 -45 316 220 220 40 chr1 4948648 4948821 -277244843 - L1MDa LINE L1 -4650 1890 1687 2589 149 31 2 chr1 4948885 4949301 -277244363 + MSTA LTR MaLR 1 428 0 3279 137 0 4 chr1 4949547 4950043 -277243621 - LOR1a LTR ERV1 0 497 4 750 210 0 34 chr1 4950518 4950694 -277242970 - LTR9B LTR ERV1 -83 561 392 441 253 0 0 chr1 4950898 4951060 -277242604 + (CA)n Simple_repeat Simple_repeat 1 162 0 797 224 15 15 chr1 4951116 4951312 -277242352 - L1MDa LINE L1 -5919 611 416 487 347 74 6 chr1 4951339 4951691 -277241973 - L1MC4a LINE L1 -1907 5901 5526 855 293 63 16 chr1 4951791 4952332 -277241332 - L2 LINE L2 -252 3061 2498 351 0 0 0 chr1 4952334 4952373 -277241291 + (TG)n Simple_repeat Simple_repeat 2 40 0 577 216 6 11 chr1 4952461 4952637 -277241027 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 298 315 11 0 chr1 4952638 4952730 -277240934 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 384 254 17 0 chr1 4952734 4952911 -277240753 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 502 282 96 13 chr1 4952971 4953031 -277240633 - L2 LINE L2 -880 2434 2380 1324 205 46 58 chr1 4953031 4953426 -277240238 - MLT1B LTR MaLR 0 390 1 502 282 96 13 chr1 4953426 4953666 -277239998 - L2 LINE L2 -934 2380 2109 281 178 41 55 chr1 4953863 4953936 -277239728 - L1ME LINE L1 -563 5607 5536 756 255 32 19 chr1 4954152 4954368 -277239296 - MER20 DNA MER1_type 0 219 1 1515 187 93 12 chr1 4954455 4954792 -277238872 + MSTD LTR MaLR 30 396 0 1773 29 0 5 chr1 4957861 4958071 -277235593 + L1PA4 LINE L1 5945 6153 -2 495 256 98 66 chr1 4958752 4959069 -277234595 - MLT1K LTR MaLR -1 587 261 285 214 31 0 chr1 4960125 4960223 -277233441 + CT-rich Low_complexity Low_complexity 3 103 0 203 313 17 61 chr1 4960695 4960810 -277232854 + L2 LINE L2 3161 3270 -2 1531 283 98 37 chr1 4960918 4962218 -277231446 - L1ME LINE L1 -4648 1432 64 483 107 0 0 chr1 4962255 4962330 -277231334 + (TTTC)n Simple_repeat Simple_repeat 3 77 0 2122 118 7 13 chr1 4962337 4962643 -277231021 - AluSx SINE Alu -8 304 1 200 188 0 0 chr1 4962727 4962759 -277230905 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 482 267 37 12 chr1 4963056 4963217 -277230447 + MIR SINE MIR 17 181 -81 1325 216 102 12 chr1 4963276 4963619 -277230045 + MLT1A2 LTR MaLR 1 374 0 2479 158 8 0 chr1 4964772 4965172 -277228492 + MER57A LTR ERV1 1 403 0 243 133 0 0 chr1 4965313 4965358 -277228306 + (TG)n Simple_repeat Simple_repeat 2 46 0 234 62 0 0 chr1 4965717 4965749 -277227915 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 233 269 30 0 chr1 4967286 4967353 -277226311 - MIR SINE MIR 0 262 194 1314 204 135 13 chr1 4967354 4967788 -277225876 - MLT1E LTR MaLR 0 593 102 380 172 0 0 chr1 4967779 4967837 -277225827 - MLT1E LTR MaLR -455 138 81 * 365 279 0 95 chr1 4968011 4968190 -277225474 - MIR SINE MIR -77 185 24 186 364 56 19 chr1 4968564 4968726 -277224938 - MIR SINE MIR -48 214 47 638 276 62 73 chr1 4970580 4971062 -277222602 + MLT1J LTR MaLR 12 488 -23 2231 119 3 0 chr1 4971134 4971437 -277222227 - AluSp SINE Alu -9 304 1 256 298 11 11 chr1 4971445 4971539 -277222125 - MIR SINE MIR -108 154 61 288 324 11 50 chr1 4972219 4972398 -277221266 - MIR SINE MIR -10 252 81 3086 138 7 43 chr1 4972554 4972966 -277220698 + L1PA16 LINE L1 5630 6019 -147 1763 168 0 34 chr1 4972966 4973297 -277220367 + AluJb SINE Alu 3 323 0 3086 138 7 43 chr1 4973297 4973440 -277220224 + L1PA16 LINE L1 6019 6166 0 578 222 149 26 chr1 4973710 4973904 -277219760 - LTR16C LTR ERVL -2 489 272 220 271 0 0 chr1 4973932 4973991 -277219673 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 23 0 0 0 chr1 4974103 4974126 -277219538 + AT_rich Low_complexity Low_complexity 1 23 0 1340 123 5 9 chr1 4974126 4974337 -277219327 - L1PA15 LINE L1 0 6165 5956 529 326 39 25 chr1 4974551 4974913 -277218751 - L1PA13 LINE L1 -748 6049 5683 478 116 147 0 chr1 4974925 4975020 -277218644 - AluSp/q SINE Alu -2 311 203 15611 219 21 7 chr1 4975025 4979415 -277214249 - L1PA13 LINE L1 -1134 5663 1179 2232 265 23 5 chr1 4979780 4980396 -277213268 - L1ME3 LINE L1 -7 6155 5529 256 301 83 74 chr1 4980406 4980635 -277213029 + MIR SINE MIR 31 261 -1 249 325 42 17 chr1 4981543 4981663 -277212001 + MIR SINE MIR 13 135 -127 488 247 0 0 chr1 4982865 4982958 -277210706 + MER81 DNA DNA 2 94 -20 256 265 29 0 chr1 4982957 4983025 -277210639 + MER81 DNA DNA 44 113 -1 * 297 302 21 10 chr1 4983523 4983619 -277210045 + MIR SINE MIR 87 183 -79 659 207 12 0 chr1 4983691 4983860 -277209804 + (TCCA)n Simple_repeat Simple_repeat 3 173 0 1115 133 2 8 chr1 4983874 4984354 -277209310 + (TCCA)n Simple_repeat Simple_repeat 1 477 0 302 335 30 37 chr1 4984373 4984461 -277209203 - L2 LINE L2 -44 3269 3181 2748 97 8 3 chr1 4984461 4984823 -277208841 - THE1B LTR MaLR 0 364 1 302 335 30 37 chr1 4984823 4984898 -277208766 - L2 LINE L2 -132 3181 3107 324 308 125 47 chr1 4985194 4985658 -277208006 - L2 LINE L2 -582 2732 2233 1361 225 45 51 chr1 4987756 4988205 -277205459 - MER74A LTR ERVL -13 545 100 1013 160 11 6 chr1 4988307 4988788 -277204876 + (CAT)n Simple_repeat Simple_repeat 1 483 0 242 219 37 0 chr1 4988792 4988874 -277204790 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 257 215 0 31 chr1 4990450 4990515 -277203149 + MIR SINE MIR 93 155 -107 198 326 61 10 chr1 4991326 4991424 -277202240 + MIR SINE MIR 51 153 -109 307 297 79 44 chr1 4991463 4991692 -277201972 + L2 LINE L2 1816 2052 -1262 278 176 0 0 chr1 4991694 4991745 -277201919 - MLT1B LTR MaLR -41 349 299 399 206 41 0 chr1 4992740 4992837 -277200827 - MER89 LTR ERV1 -458 101 1 337 173 29 64 chr1 4993046 4993219 -277200445 + (TTGTG)n Simple_repeat Simple_repeat 5 171 0 303 206 33 60 chr1 4993240 4993424 -277200240 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 895 227 117 80 chr1 4994123 4994585 -277199079 - MLT2B1 LTR ERVL 0 520 42 221 319 0 14 chr1 4996791 4996863 -277196801 + L2 LINE L2 3201 3271 -1 1719 155 115 3 chr1 4997592 4997915 -277195749 - MSTA LTR MaLR 0 428 70 740 76 14 1 chr1 4998029 4998148 -277195516 - MSTA LTR MaLR -302 124 1 1739 225 82 7 chr1 4998344 4998793 -277194871 - LTR53 LTR ERVL -14 505 23 2151 101 0 3 chr1 4998795 4999091 -277194573 + AluSx SINE Alu 1 295 -17 279 79 0 0 chr1 4999091 4999129 -277194535 + (TA)n Simple_repeat Simple_repeat 2 39 0 420 320 132 48 chr1 4999249 4999499 -277194165 + LTR16A1 LTR ERVL 187 457 0 377 325 49 25 chr1 4999516 4999679 -277193985 - MIR SINE MIR -31 231 65 1198 198 12 12 chr1 4999681 4999924 -277193740 + AluJo SINE Alu 1 243 -69 181 318 218 13 chr1 5000032 5000271 -277193393 + L2 LINE L2 2981 3268 -4 260 359 17 0 chr1 5002389 5002506 -277191158 + L2 LINE L2 3182 3300 -13 246 62 0 0 chr1 5002506 5002538 -277191126 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2755 107 11 5 chr1 5003480 5003853 -277189811 + THE1C LTR MaLR 1 375 0 214 316 0 0 chr1 5004516 5004573 -277189091 + (CA)n Simple_repeat Simple_repeat 1 57 0 348 310 9 9 chr1 5004788 5004901 -277188763 - MER81 DNA DNA 0 114 2 2100 113 0 0 chr1 5006287 5006571 -277187093 + AluSc SINE Alu 1 287 -22 210 71 0 0 chr1 5006571 5006599 -277187065 + (TG)n Simple_repeat Simple_repeat 2 29 0 991 30 15 0 chr1 5006629 5006760 -277186904 + (TATATG)n Simple_repeat Simple_repeat 2 134 0 1178 234 114 91 chr1 5006760 5007455 -277186209 + MER21B LTR ERV1 23 733 -130 1357 214 85 55 chr1 5007567 5008001 -277185663 - MLT1C LTR MaLR -15 452 6 349 270 43 74 chr1 5008045 5008275 -277185389 + L2 LINE L2 1605 1827 -1487 194 293 0 0 chr1 5008301 5008359 -277185305 + L2 LINE L2 1924 1981 -1333 1803 203 16 18 chr1 5008373 5008757 -277184907 + MER89 LTR ERV1 175 557 -2 339 250 267 30 chr1 5008759 5009055 -277184609 + L2 LINE L2 1975 2340 -974 279 325 103 17 chr1 5009095 5009212 -277184452 - MLT1H LTR MaLR -16 533 407 254 261 61 26 chr1 5009399 5009514 -277184150 - MLT1I LTR MaLR -272 137 19 1933 144 174 11 chr1 5009565 5009933 -277183731 + MSTA LTR MaLR 1 428 0 9739 133 32 35 chr1 5009935 5011518 -277182146 + MSTA-int LTR MaLR 3 1580 0 1216 134 259 14 chr1 5011518 5011808 -277181856 + MSTA LTR MaLR 1 361 -67 1890 286 52 37 chr1 5011817 5012690 -277180974 + L1ME2 LINE L1 4420 5305 -841 820 291 43 78 chr1 5012699 5013391 -277180273 + L1MB1 LINE L1 5264 5931 -258 * 2418 229 54 57 chr1 5012791 5013600 -277180064 + L1ME2 LINE L1 5349 6155 -9 1832 133 7 4 chr1 5013640 5013918 -277179746 + AluSx SINE Alu 21 299 -13 274 207 0 0 chr1 5015466 5015524 -277178140 + Charlie5 DNA MER1_type 33 90 -2522 2846 35 15 0 chr1 5015564 5015904 -277177760 - L1PA4 LINE L1 0 6155 5811 230 303 64 9 chr1 5018021 5018130 -277175534 - MIR SINE MIR -15 247 133 2288 130 37 11 chr1 5018531 5018886 -277174778 + THE1B LTR MaLR 1 364 0 2138 226 12 53 chr1 5019039 5019544 -277174120 + MER66B LTR ERV1 1 484 -2 207 0 0 0 chr1 5020499 5020522 -277173142 + (CA)n Simple_repeat Simple_repeat 1 23 0 633 186 0 0 chr1 5021797 5021926 -277171738 + (GAGTG)n Simple_repeat Simple_repeat 2 130 0 948 146 0 0 chr1 5021927 5022105 -277171559 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 348 83 0 0 chr1 5022107 5022155 -277171509 + (AATAG)n Simple_repeat Simple_repeat 4 51 0 730 274 100 20 chr1 5022381 5022680 -277170984 - MLT1I LTR MaLR 0 409 87 429 303 12 36 chr1 5022869 5023034 -277170630 - L2 LINE L2 -2 3311 3151 320 200 294 0 chr1 5023042 5023127 -277170537 + MER3 DNA MER1_type 5 114 -95 925 124 0 0 chr1 5023128 5023257 -277170407 + AluSg1 SINE Alu 1 129 -180 408 302 50 23 chr1 5024335 5024510 -277169154 + MIR SINE MIR 34 214 -48 962 120 23 0 chr1 5024657 5024667 -277168997 + (ATG)n Simple_repeat Simple_repeat 1 189 0 962 120 23 0 chr1 5024667 5024842 -277168822 + (ATG)n Simple_repeat Simple_repeat 1 179 0 984 151 0 0 chr1 5024967 5025146 -277168518 + (ATG)n Simple_repeat Simple_repeat 1 179 0 510 270 55 18 chr1 5025198 5025361 -277168303 - MIR SINE MIR -9 253 85 482 307 73 0 chr1 5026220 5026425 -277167239 - MIR SINE MIR -29 233 14 1105 104 37 0 chr1 5026862 5027026 -277166638 + THE1C LTR MaLR 3 172 -203 * 1503 150 62 11 chr1 5027024 5027297 -277166367 + THE1C LTR MaLR 89 375 0 420 19 0 0 chr1 5027990 5028042 -277165622 - THE1C LTR MaLR -201 174 123 * 997 193 42 146 chr1 5028041 5028398 -277165266 + MLT1C LTR MaLR 71 390 0 182 385 8 8 chr1 5028456 5028578 -277165086 - L2 LINE L2 -1488 1826 1705 203 242 65 0 chr1 5028716 5028778 -277164886 + L2 LINE L2 3201 3266 -6 508 271 23 8 chr1 5028969 5029102 -277164562 - MER5A DNA MER1_type 0 189 55 358 318 34 20 chr1 5028987 5029135 -277164529 + MER5A DNA MER1_type 32 181 -8 * 1848 156 0 29 chr1 5029398 5029705 -277163959 - AluJb SINE Alu -14 298 1 689 360 34 24 chr1 5030909 5031237 -277162427 + HERV16 LTR ERVL 2646 2976 -2020 1756 224 95 25 chr1 5031292 5031841 -277161823 + MER92B LTR ERV1 1 587 -49 369 202 22 22 chr1 5032093 5032182 -277161482 + MER92B LTR ERV1 546 634 -2 1421 226 45 25 chr1 5033904 5034352 -277159312 - MLT1C LTR MaLR 0 467 1 1662 115 51 90 chr1 5034361 5034751 -277158913 + THE1C LTR MaLR 1 375 0 1147 231 196 3 chr1 5035169 5035542 -277158122 + MER90 LTR ERV1 1 445 -130 753 256 10 20 chr1 5035662 5035865 -277157799 + MER90 LTR ERV1 414 614 0 245 252 191 8 chr1 5035874 5036005 -277157659 - MIR SINE MIR 0 262 108 298 231 0 50 chr1 5036110 5036231 -277157433 + (TATATG)n Simple_repeat Simple_repeat 4 118 0 340 366 8 2 chr1 5036232 5036359 -277157305 - MIR SINE MIR -54 154 28 281 219 12 61 chr1 5036381 5036463 -277157201 + L2 LINE L2 3236 3313 0 478 318 34 0 chr1 5036481 5036660 -277157004 + L1ME LINE L1 5530 5714 -456 306 73 0 0 chr1 5036902 5036943 -277156721 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 206 48 0 chr1 5036945 5037008 -277156656 + GA-rich Low_complexity Low_complexity 2 67 0 1785 90 5 0 chr1 5037112 5037334 -277156330 + AluSg/x SINE Alu 77 299 -13 718 264 67 11 chr1 5037699 5037983 -277155681 - MLT1C LTR MaLR 0 467 168 5269 54 8 11 chr1 5037986 5038693 -277154971 + L1PA7 LINE L1 5450 6154 0 509 208 101 13 chr1 5038781 5038930 -277154734 - MLT1C LTR MaLR -299 168 7 218 271 112 48 chr1 5038932 5039120 -277154544 - L2 LINE L2 -649 2665 2466 353 206 118 113 chr1 5040278 5040342 -277153322 - LTR50 LTR ERVL -27 768 706 2027 132 35 0 chr1 5040342 5040630 -277153034 + AluSp SINE Alu 1 298 -15 2568 77 0 0 chr1 5040630 5040941 -277152723 + AluY SINE Alu 1 311 0 353 206 118 113 chr1 5040941 5041079 -277152585 - LTR50 LTR ERVL -88 707 564 408 246 57 8 chr1 5041624 5041746 -277151918 - MLT1J1 LTR MaLR -71 375 248 615 230 67 12 chr1 5041758 5041923 -277151741 - MLT1C LTR MaLR -7 460 287 398 290 10 5 chr1 5041923 5042136 -277151528 + (TG)n Simple_repeat Simple_repeat 1 214 0 714 250 85 4 chr1 5042883 5043119 -277150545 + MIR SINE MIR 8 262 0 316 320 0 0 chr1 5043121 5043221 -277150443 - MIR SINE MIR -2 260 161 304 257 0 55 chr1 5043441 5043550 -277150114 - MIR SINE MIR -120 142 40 753 165 0 0 chr1 5045474 5045638 -277148026 + GA-rich Low_complexity Low_complexity 1 164 0 2791 104 46 0 chr1 5045643 5046058 -277147606 + LTR1 LTR ERV1 352 785 0 1010 184 50 0 chr1 5046058 5046254 -277147410 + Tigger7 DNA MER2_type 2282 2487 0 1034 273 106 8 chr1 5047242 5047638 -277146026 + MLT1C LTR MaLR 5 439 -28 188 247 62 62 chr1 5047782 5047863 -277145801 - MIR SINE MIR -62 146 66 222 174 0 0 chr1 5048256 5048302 -277145362 + A-rich Low_complexity Low_complexity 1 46 0 302 235 37 0 chr1 5048967 5049048 -277144616 + MER5A DNA MER1_type 26 109 -80 218 224 17 17 chr1 5049040 5049098 -277144566 - MER5A DNA MER1_type -113 76 19 * 1000 258 65 53 chr1 5049931 5050349 -277143315 + MLT1C LTR MaLR 44 466 -1 847 261 108 56 chr1 5051954 5052295 -277141369 + MLT1J LTR MaLR 41 399 -112 228 343 14 0 chr1 5052456 5052526 -277141138 + L2 LINE L2 3243 3313 0 2403 130 54 2 chr1 5052535 5052720 -277140944 + MSTA LTR MaLR 1 175 -253 4035 54 4 2 chr1 5052720 5053240 -277140424 + L1PA6 LINE L1 5634 6154 0 2403 130 54 2 chr1 5053240 5053461 -277140203 + MSTA LTR MaLR 175 428 0 24 0 0 0 chr1 5053542 5053566 -277140098 + AT_rich Low_complexity Low_complexity 1 24 0 1237 232 41 11 chr1 5054284 5054646 -277139018 + MLT1A2 LTR MaLR 2 374 0 1744 222 71 5 chr1 5054925 5055348 -277138316 + MLT1C LTR MaLR 1 451 -16 191 277 67 76 chr1 5056859 5056978 -277136686 + MIR3 SINE MIR 84 201 -7 * 425 215 82 138 chr1 5056943 5057138 -277136526 - MIR SINE MIR -49 213 30 471 206 14 7 chr1 5057297 5057438 -277136226 + (ATG)n Simple_repeat Simple_repeat 2 143 0 510 217 18 0 chr1 5057466 5057632 -277136032 + (ATG)n Simple_repeat Simple_repeat 2 170 0 263 194 32 0 chr1 5057637 5057699 -277135965 + (ATGGTG)n Simple_repeat Simple_repeat 2 65 0 483 218 11 11 chr1 5057709 5057883 -277135781 + (ATG)n Simple_repeat Simple_repeat 1 174 0 730 169 6 12 chr1 5057899 5058071 -277135593 + (ATG)n Simple_repeat Simple_repeat 2 172 0 299 202 11 0 chr1 5058085 5058174 -277135490 + (ATG)n Simple_repeat Simple_repeat 2 91 0 473 336 22 18 chr1 5058302 5058437 -277135227 - L2 LINE L2 -691 2623 2485 1074 205 14 0 chr1 5058437 5058652 -277135012 - MER20 DNA MER1_type 0 219 2 473 336 22 18 chr1 5058652 5058742 -277134922 - L2 LINE L2 -829 2485 2397 * 487 245 0 0 chr1 5058738 5058836 -277134828 + L2 LINE L2 3216 3313 0 * 1193 326 67 20 chr1 5058835 5059495 -277134169 - L2 LINE L2 -902 2412 1722 1074 165 385 15 chr1 5059496 5059836 -277133828 - MER31B LTR ERV1 0 466 1 203 210 32 0 chr1 5059851 5059913 -277133751 - L2 LINE L2 -1612 1702 1639 432 254 0 27 chr1 5061040 5061150 -277132514 + (CCCA)n Simple_repeat Simple_repeat 2 108 0 489 253 0 0 chr1 5061155 5061317 -277132347 + (TCCA)n Simple_repeat Simple_repeat 2 163 0 801 220 3 7 chr1 5061347 5061656 -277132008 + (TCCA)n Simple_repeat Simple_repeat 1 307 0 269 258 17 17 chr1 5061667 5061713 -277131951 + (CCCA)n Simple_repeat Simple_repeat 3 48 -132 1963 154 118 26 chr1 5061713 5062103 -277131561 - MSTA LTR MaLR -2 426 1 269 258 17 17 chr1 5062103 5062234 -277131430 + (CCCA)n Simple_repeat Simple_repeat 47 180 0 * 362 282 6 0 chr1 5062227 5062397 -277131267 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 214 327 77 0 chr1 5062792 5062896 -277130768 - L2 LINE L2 -517 2797 2686 621 315 28 0 chr1 5063034 5063247 -277130417 - MIR SINE MIR -29 233 15 2259 136 63 29 chr1 5063356 5063768 -277129896 - MSTB LTR MaLR 0 426 1 1463 257 46 33 chr1 5064043 5064587 -277129077 + L1ME2 LINE L1 5504 6054 -110 2161 112 31 3 chr1 5064590 5064926 -277128738 - AluSg SINE Alu 0 349 6 267 262 107 0 chr1 5064936 5065039 -277128625 + L1ME2 LINE L1 6041 6154 -10 254 194 15 0 chr1 5065075 5065142 -277128522 + GA-rich Low_complexity Low_complexity 4 71 0 362 317 83 17 chr1 5066840 5067095 -277126569 + L1ME4a LINE L1 5618 5887 -234 1616 179 12 52 chr1 5067098 5067423 -277126241 + AluJo SINE Alu 1 312 0 336 102 0 0 chr1 5067425 5067474 -277126190 + (GGA)n Simple_repeat Simple_repeat 3 51 0 1536 199 62 17 chr1 5068233 5068585 -277125079 - MLT1B LTR MaLR -22 368 1 1864 136 0 0 chr1 5068660 5068911 -277124753 + AluSx SINE Alu 40 290 -22 3558 108 25 56 chr1 5069513 5070589 -277123075 - MER11A LTR ERVK 0 1071 1 515 253 94 109 chr1 5070591 5070847 -277122817 + MER77 LTR ERV1 60 318 -287 2570 113 0 0 chr1 5070847 5071211 -277122453 - THE1B LTR MaLR 0 364 1 515 253 94 109 chr1 5071211 5071484 -277122180 + MER77 LTR ERV1 318 601 -4 237 227 30 15 chr1 5071485 5071551 -277122113 + MER21B LTR ERV1 613 679 -184 28 0 0 0 chr1 5071633 5071661 -277122003 + AT_rich Low_complexity Low_complexity 1 28 0 1645 176 56 14 chr1 5072366 5072775 -277120889 + MLT1C LTR MaLR 1 467 0 352 331 83 35 chr1 5073392 5073418 -277120246 - MLT1L LTR MaLR 0 615 592 2198 134 111 8 chr1 5073418 5073806 -277119858 - MSTA LTR MaLR 0 428 1 352 331 83 35 chr1 5073806 5074033 -277119631 - MLT1L LTR MaLR -23 592 350 1981 143 28 33 chr1 5074462 5074825 -277118839 + THE1B LTR MaLR 1 361 -3 1412 181 7 34 chr1 5075166 5075459 -277118205 - MLT1C LTR MaLR -31 436 152 881 179 10 51 chr1 5075458 5075654 -277118010 - MLT1C LTR MaLR -279 188 1 * 456 236 42 56 chr1 5076610 5076754 -277116910 + MIR SINE MIR 85 226 -36 208 333 12 0 chr1 5076771 5076852 -277116812 + (TG)n Simple_repeat Simple_repeat 1 82 0 436 288 41 35 chr1 5076859 5077029 -277116635 - L2 LINE L2 -28 3285 3115 669 327 40 4 chr1 5077137 5077415 -277116249 - MLT1I LTR MaLR -3 406 119 265 241 45 62 chr1 5077559 5077671 -277115993 - MIR SINE MIR -119 143 34 2241 171 24 31 chr1 5077730 5078151 -277115513 + MSTB LTR MaLR 9 426 0 300 322 131 20 chr1 5078970 5079169 -277114495 - MIR SINE MIR -34 228 8 5342 205 29 30 chr1 5079945 5079964 -277113700 + L1MC1 LINE L1 4065 4083 -2250 2450 89 47 6 chr1 5079964 5080324 -277113340 + THE1C LTR MaLR 1 375 0 5342 205 29 30 chr1 5080324 5082563 -277111101 + L1MC1 LINE L1 4083 6333 0 400 176 232 31 chr1 5082565 5082692 -277110972 + L1ME1 LINE L1 6024 6334 0 1641 216 29 3 chr1 5083543 5083894 -277109770 + MLT1A1 LTR MaLR 6 365 0 354 23 0 0 chr1 5086914 5086957 -277106707 + (TG)n Simple_repeat Simple_repeat 1 43 0 560 286 7 0 chr1 5087818 5087965 -277105699 + MER3 DNA MER1_type 1 148 -61 3765 209 47 19 chr1 5088700 5089503 -277104161 - LTR1B LTR ERV1 0 826 1 258 101 45 45 chr1 5090592 5090681 -277102983 + (TTAAA)n Simple_repeat Simple_repeat 4 92 0 1821 184 10 7 chr1 5090863 5091167 -277102497 - AluJo SINE Alu -7 305 1 2518 181 89 20 chr1 5091628 5092236 -277101428 + L1MC3 LINE L1 7124 7773 -12 868 210 28 40 chr1 5092257 5092509 -277101155 + L1MB3 LINE L1 5931 6179 -4 2332 56 20 0 chr1 5092537 5092839 -277100825 - L1PA8 LINE L1 -2 6170 5863 2295 80 0 0 chr1 5092840 5093154 -277100510 + L1PA8 LINE L1 5573 5886 -286 379 356 54 0 chr1 5094230 5094379 -277099285 - MER5B DNA MER1_type -16 162 6 2030 149 3 3 chr1 5095712 5096008 -277097656 - AluSx SINE Alu -14 298 3 260 265 147 29 chr1 5097555 5097691 -277095973 + L2 LINE L2 2916 3067 -246 354 292 70 39 chr1 5097712 5098274 -277095390 - L1MC/D LINE L1 -727 5443 4903 492 283 143 12 chr1 5098302 5098553 -277095111 - MLT1J LTR MaLR -2 509 226 2407 122 111 8 chr1 5098857 5099243 -277094421 + MSTB LTR MaLR 1 426 0 586 309 66 18 chr1 5099306 5099821 -277093843 - L1MC/D LINE L1 -1478 4668 4129 235 185 19 37 chr1 5099927 5099981 -277093683 + CT-rich Low_complexity Low_complexity 3 55 0 4076 133 13 39 chr1 5100087 5100803 -277092861 - MER50 LTR ERV1 -24 710 14 488 294 46 18 chr1 5100926 5101144 -277092520 - L1MC/D LINE L1 -2336 3810 3587 21 0 0 0 chr1 5101218 5101239 -277092425 + AT_rich Low_complexity Low_complexity 1 21 0 386 282 112 30 chr1 5101248 5101723 -277091941 - L1MC/D LINE L1 -2751 3395 2882 367 280 158 41 chr1 5101787 5102181 -277091483 - L1MDa LINE L1 -2805 3735 2330 287 304 43 52 chr1 5102254 5102580 -277091084 - HAL1 LINE L1 -761 1746 1424 228 296 78 39 chr1 5102650 5102907 -277090757 - L1MDa LINE L1 -4862 1668 1402 1896 160 0 11 chr1 5102948 5103269 -277090395 + AluJb SINE Alu 3 320 0 231 36 0 0 chr1 5104632 5104660 -277089004 + (TG)n Simple_repeat Simple_repeat 1 28 0 1777 159 0 17 chr1 5105426 5105722 -277087942 + AluSx SINE Alu 22 312 0 262 353 24 39 chr1 5105923 5106130 -277087534 - L2 LINE L2 -1 3312 3109 228 224 0 20 chr1 5107015 5107064 -277086600 + CT-rich Low_complexity Low_complexity 3 50 0 416 303 92 16 chr1 5107590 5107775 -277085889 + MIR SINE MIR 63 261 -1 188 296 34 80 chr1 5107928 5108016 -277085648 - L2 LINE L2 -4 3268 3185 1293 215 45 53 chr1 5108063 5108439 -277085225 + MLT1D LTR MaLR 1 373 -132 1439 138 58 7 chr1 5108440 5108629 -277085035 - MER61D LTR ERV1 0 501 323 468 0 0 0 chr1 5108629 5108681 -277084983 + (TG)n Simple_repeat Simple_repeat 2 53 0 1439 138 58 7 chr1 5108681 5108897 -277084767 - MER61D LTR ERV1 -178 323 1 528 208 25 0 chr1 5108901 5109021 -277084643 + MLT1D LTR MaLR 375 497 -8 408 278 0 53 chr1 5109057 5109208 -277084456 - L2 LINE L2 0 3313 3171 26 50 0 0 chr1 5110646 5110686 -277082978 + AT_rich Low_complexity Low_complexity 1 40 0 231 200 0 0 chr1 5111322 5111367 -277082297 + (CCCTG)n Simple_repeat Simple_repeat 4 48 0 254 269 172 59 chr1 5111367 5111757 -277081907 + LTR16A1 LTR ERVL 18 451 -6 567 236 50 0 chr1 5111805 5111945 -277081719 + MLT1C LTR MaLR 4 150 -240 508 266 156 0 chr1 5112178 5112370 -277081294 + MER31B LTR ERV1 220 441 -25 1105 218 27 27 chr1 5112395 5112693 -277080971 + MLT1C LTR MaLR 166 463 -4 2019 169 21 3 chr1 5112768 5113105 -277080559 + MER61A LTR ERV1 1 343 0 234 315 11 44 chr1 5114299 5114480 -277079184 + (CCCCG)n Simple_repeat Simple_repeat 5 179 0 215 83 0 83 chr1 5115288 5115336 -277078328 + (TG)n Simple_repeat Simple_repeat 1 44 0 201 217 0 0 chr1 5115476 5115559 -277078105 + (TG)n Simple_repeat Simple_repeat 1 83 0 180 204 27 48 chr1 5115724 5115871 -277077793 + (TATATG)n Simple_repeat Simple_repeat 1 144 0 490 257 0 22 chr1 5116091 5116274 -277077390 + (CATA)n Simple_repeat Simple_repeat 1 179 0 237 296 0 0 chr1 5116268 5116366 -277077298 + (TA)n Simple_repeat Simple_repeat 2 99 0 * 538 231 0 22 chr1 5116380 5116562 -277077102 + (CATA)n Simple_repeat Simple_repeat 3 180 0 486 190 0 0 chr1 5117155 5117234 -277076430 + MER21B LTR ERV1 12 90 -773 2157 249 60 18 chr1 5117360 5117982 -277075682 + MER21B LTR ERV1 138 785 -78 1748 185 3 55 chr1 5118170 5118329 -277075335 + MLT1A1 LTR MaLR 1 167 -198 959 128 0 0 chr1 5118329 5118462 -277075202 + FLAM_C SINE Alu 1 133 0 1748 185 3 55 chr1 5118462 5118681 -277074983 + MLT1A1 LTR MaLR 167 359 -6 289 216 27 14 chr1 5119104 5119178 -277074486 + MLT1I LTR MaLR 308 382 -27 2294 132 3 0 chr1 5120225 5120535 -277073129 + AluSp SINE Alu 1 311 -2 186 155 36 179 chr1 5122485 5122569 -277071095 + L3 LINE CR1 227 298 -1279 2817 190 52 34 chr1 5122729 5122779 -277070885 - L1MB3 LINE L1 0 6183 6135 2326 90 7 7 chr1 5122779 5123079 -277070585 - AluSx SINE Alu -12 300 1 2084 144 3 0 chr1 5123082 5123374 -277070290 - AluSx SINE Alu -19 293 1 2817 190 52 34 chr1 5123374 5124029 -277069635 - L1MB3 LINE L1 -49 6134 5461 792 202 10 52 chr1 5124029 5124222 -277069442 + MER58A DNA MER1_type 40 224 0 417 226 0 0 chr1 5124314 5124407 -277069257 + L1MA7 LINE L1 6196 6288 -3 198 302 16 16 chr1 5124885 5124948 -277068716 - MIR SINE MIR -2 260 198 587 216 144 10 chr1 5125027 5125235 -277068429 - MER69 DNA AcHobo -2 2524 2289 1337 153 97 0 chr1 5125326 5125574 -277068090 + MLT1B LTR MaLR 1 272 -118 2607 86 77 20 chr1 5125574 5125954 -277067710 - MSTA LTR MaLR 0 428 22 1934 140 184 11 chr1 5125954 5126319 -277067345 + MSTA LTR MaLR 1 428 0 2607 86 77 20 chr1 5126319 5126343 -277067321 - MSTA LTR MaLR -406 22 1 694 177 0 0 chr1 5126343 5126466 -277067198 + MLT1B LTR MaLR 268 390 0 544 238 60 38 chr1 5126466 5126651 -277067013 - MER69 DNA AcHobo -2170 356 168 980 221 0 0 chr1 5127960 5128159 -277065505 + MLT1B LTR MaLR 192 390 0 444 327 30 49 chr1 5128165 5128431 -277065233 - L1MB3 LINE L1 -913 5233 4973 3103 160 78 66 chr1 5128985 5129668 -277063996 - LTR8 LTR ERV1 0 691 1 555 333 83 22 chr1 5129823 5130501 -277063163 - L1MB3 LINE L1 -1438 4708 3990 334 269 211 27 chr1 5130850 5131073 -277062591 - L2 LINE L2 -804 2510 2247 326 326 30 68 chr1 5131170 5131487 -277062177 - L1MEd LINE L1 -5366 753 393 211 79 79 87 chr1 5131657 5131783 -277061881 + (CACCT)n Simple_repeat Simple_repeat 1 125 0 466 280 86 5 chr1 5131908 5132094 -277061570 - L1MEd LINE L1 -5917 202 2 326 302 22 7 chr1 5132656 5132795 -277060869 + MLT2C1 LTR ERVL 58 198 -199 * 1277 246 96 46 chr1 5132682 5133203 -277060461 + MLT1E2 LTR MaLR 80 626 0 2291 113 0 0 chr1 5133230 5133532 -277060132 - AluSg SINE Alu -8 302 1 258 331 138 37 chr1 5134116 5134412 -277059252 + L2 LINE L2 2863 3188 -84 2413 145 54 2 chr1 5134763 5135225 -277058439 + LTR19A LTR ERV1 1 486 0 431 200 16 96 chr1 5135303 5135428 -277058236 + MER58A DNA MER1_type 5 119 0 638 131 0 10 chr1 5135449 5135548 -277058116 + MER4A LTR ERV1 1 98 -566 1930 113 3 24 chr1 5135548 5135901 -277057763 + MER4A LTR ERV1 261 664 0 262 269 0 13 chr1 5135906 5135984 -277057680 + MER58A DNA MER1_type 145 221 -3 273 319 21 49 chr1 5136112 5136256 -277057408 + MIR SINE MIR 72 211 -51 21 0 0 0 chr1 5137048 5137069 -277056595 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 5137193 5137214 -277056450 + AT_rich Low_complexity Low_complexity 1 21 0 1077 152 11 0 chr1 5137221 5137405 -277056259 - L1PA15 LINE L1 -13 6152 5967 301 310 70 14 chr1 5137520 5137662 -277056002 + MIR SINE MIR 70 219 -43 2468 99 0 0 chr1 5137908 5138221 -277055443 + AluSq SINE Alu 1 313 0 1489 194 19 16 chr1 5138310 5138424 -277055240 - L1MA8 LINE L1 -4 6287 6175 2516 144 16 11 chr1 5138424 5138867 -277054797 + MER65A LTR ERV1 1 445 0 1489 194 19 16 chr1 5138867 5139062 -277054602 - L1MA8 LINE L1 -116 6175 5977 1221 211 71 6 chr1 5139741 5140063 -277053601 - MER89 LTR ERV1 -9 550 208 847 178 29 11 chr1 5140270 5140444 -277053220 + MLT1A1 LTR MaLR 1 177 -188 1480 186 11 55 chr1 5140452 5140818 -277052846 - L1 LINE L1 -840 5306 4957 5403 140 3 21 chr1 5140820 5141441 -277052223 + L1MA6 LINE L1 5356 5955 -345 2033 132 10 23 chr1 5141441 5141751 -277051913 + AluY SINE Alu 1 306 -5 5403 140 3 21 chr1 5141751 5142091 -277051573 + L1MA6 LINE L1 5955 6300 0 1120 192 27 5 chr1 5142102 5142321 -277051343 + MLT1A1 LTR MaLR 142 365 0 241 236 22 67 chr1 5142963 5143052 -277050612 + L2 LINE L2 3187 3271 -1 204 254 16 32 chr1 5143316 5143379 -277050285 + MIR3 SINE MIR 15 76 -132 1989 168 0 0 chr1 5143486 5143790 -277049874 + AluJb SINE Alu 9 312 0 1917 246 17 2 chr1 5143872 5144335 -277049329 - L1MB5 LINE L1 -1 6173 5704 528 96 0 0 chr1 5144526 5144599 -277049065 + THE1B LTR MaLR 1 73 -291 1809 179 24 3 chr1 5144599 5144940 -277048724 + THE1A LTR MaLR 7 354 -1 2175 122 3 0 chr1 5145075 5145369 -277048295 - AluSc SINE Alu -14 295 1 1073 157 0 0 chr1 5145748 5145914 -277047750 + FRAM SINE Alu 1 166 0 189 375 0 29 chr1 5145983 5146087 -277047577 + L3 LINE CR1 1402 1502 -75 352 258 52 71 chr1 5146111 5146141 -277047523 - MIR SINE MIR -91 171 142 2249 129 7 0 chr1 5146141 5146444 -277047220 - AluSq SINE Alu -8 305 1 352 258 52 71 chr1 5146444 5146568 -277047096 - MIR SINE MIR -120 142 20 869 287 6 18 chr1 5146597 5146928 -277046736 - L1ME4a LINE L1 -203 5918 5592 341 345 72 52 chr1 5147312 5147796 -277045868 + MLT1J LTR MaLR 3 496 -15 245 382 89 21 chr1 5148084 5148275 -277045389 + MIR SINE MIR 47 250 -12 24 0 0 0 chr1 5149741 5149765 -277043899 + AT_rich Low_complexity Low_complexity 1 24 0 618 297 32 86 chr1 5150394 5150802 -277042862 + L2 LINE L2 2922 3307 -6 1081 225 29 29 chr1 5152032 5152348 -277041316 + LTR53 LTR ERVL 204 519 0 227 222 194 9 chr1 5152544 5152652 -277041012 + L2 LINE L2 3141 3268 -4 1833 187 11 125 chr1 5153344 5153365 -277040299 + L1MB8 LINE L1 5623 5645 -533 2284 102 36 33 chr1 5153365 5153728 -277039936 + THE1B LTR MaLR 1 364 0 1833 187 11 125 chr1 5153728 5153982 -277039682 + L1MB8 LINE L1 5645 5790 -388 2403 76 3 10 chr1 5153982 5154283 -277039381 + AluSg SINE Alu 1 299 -11 1833 187 11 125 chr1 5154283 5154632 -277039032 + L1MB8 LINE L1 5790 6177 -1 2272 102 0 0 chr1 5156179 5156492 -277037172 - AluSx SINE Alu 0 313 1 1181 182 40 16 chr1 5156658 5156911 -277036753 + MLT1B LTR MaLR 111 369 -21 1531 231 56 7 chr1 5157095 5157540 -277036124 - MLT1C LTR MaLR 0 467 1 21 36 0 0 chr1 5158669 5158697 -277034967 + AT_rich Low_complexity Low_complexity 1 28 0 506 235 0 3 chr1 5159277 5159580 -277034084 + (CA)n Simple_repeat Simple_repeat 1 301 0 2364 103 0 0 chr1 5159633 5159933 -277033731 + AluSq SINE Alu 1 300 -13 343 266 133 36 chr1 5160552 5160816 -277032848 - MLT1H1 LTR MaLR -10 539 189 300 146 0 0 chr1 5160817 5160865 -277032799 + MLT2B1 LTR ERVL 1 48 -472 978 213 21 28 chr1 5160866 5161194 -277032470 + MLT2B1 LTR ERVL 149 520 0 1895 145 37 14 chr1 5161227 5161397 -277032267 - AluSx SINE Alu -9 303 122 285 51 0 0 chr1 5161397 5161436 -277032228 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1895 145 37 14 chr1 5161436 5161561 -277032103 - AluSx SINE Alu -190 122 1 430 267 44 7 chr1 5161561 5161685 -277031979 - MLT1H1 LTR MaLR -423 132 1 1894 164 59 16 chr1 5162115 5162486 -277031178 - MLT1B LTR MaLR -3 387 1 26 30 0 0 chr1 5162731 5162764 -277030900 + AT_rich Low_complexity Low_complexity 1 33 0 281 243 81 27 chr1 5163682 5163793 -277029871 - MLT1K LTR MaLR -7 581 465 476 292 7 0 chr1 5163979 5164116 -277029548 + MIR SINE MIR 84 221 -41 432 301 20 33 chr1 5164322 5164475 -277029189 + MIR SINE MIR 96 246 -16 1557 259 45 87 chr1 5164728 5165716 -277027948 - L1MCc LINE L1 -4848 1574 657 1390 285 22 22 chr1 5165806 5166259 -277027405 - L1MCc LINE L1 -5954 469 17 505 294 72 21 chr1 5166259 5166453 -277027211 - MIR SINE MIR -57 205 2 327 347 41 0 chr1 5166619 5166766 -277026898 + MIR SINE MIR 8 160 -102 5093 112 38 17 chr1 5166778 5167643 -277026021 - L1PB2 LINE L1 -3 6148 5266 192 40 0 0 chr1 5167729 5167754 -277025910 + (TG)n Simple_repeat Simple_repeat 2 26 0 409 341 38 44 chr1 5167878 5168195 -277025469 - L2 LINE L2 -2 3311 2997 625 327 66 36 chr1 5168206 5168646 -277025018 + L2 LINE L2 2859 3311 -2 300 314 31 14 chr1 5169773 5169927 -277023737 - MLT1H1 LTR MaLR -1 554 400 254 211 84 0 chr1 5170171 5170242 -277023422 - MLT1H1 LTR MaLR -478 77 1 199 340 147 0 chr1 5171803 5171959 -277021705 - L2 LINE L2 -95 3177 2999 764 174 7 0 chr1 5174259 5174414 -277019250 + L1MB5 LINE L1 6017 6172 -2 213 255 138 0 chr1 5175347 5175441 -277018223 - L2 LINE L2 -5 3267 3161 962 209 134 110 chr1 5175473 5175919 -277017745 - MLT1C LTR MaLR -10 457 1 24 0 0 0 chr1 5175935 5175959 -277017705 + AT_rich Low_complexity Low_complexity 1 24 0 302 285 85 72 chr1 5176021 5176256 -277017408 - L2 LINE L2 -180 3092 2855 275 85 0 0 chr1 5178376 5178423 -277015241 - L1PA3 LINE L1 0 6155 6109 * 568 79 22 0 chr1 5178421 5178510 -277015154 + L1P2 LINE L1 5429 5519 -635 * 1622 42 12 6 chr1 5178508 5178787 -277014877 - L1P2 LINE L1 -716 5438 5159 596 215 94 54 chr1 5178806 5179029 -277014635 + L2 LINE L2 3082 3313 0 702 210 11 11 chr1 5179099 5179275 -277014389 - MER53 DNA DNA -13 176 1 718 317 189 18 chr1 5179318 5180078 -277013586 + L2 LINE L2 1610 2499 -815 2608 201 77 4 chr1 5180090 5180652 -277013012 + MER77 LTR ERV1 1 603 -2 722 227 145 0 chr1 5180959 5181131 -277012533 - MLT1D LTR MaLR 0 505 309 2035 172 36 27 chr1 5181244 5181792 -277011872 + MLT2A2 LTR ERVL 1 554 0 388 246 107 0 chr1 5181792 5181911 -277011753 - MLT1D LTR MaLR -329 138 7 324 310 26 26 chr1 5181918 5182073 -277011591 + L2 LINE L2 2895 3049 -264 260 276 143 0 chr1 5182373 5182471 -277011193 + L2 LINE L2 3202 3313 0 240 307 0 0 chr1 5184493 5184672 -277008992 + (CA)n Simple_repeat Simple_repeat 2 180 0 288 258 0 0 chr1 5184754 5184878 -277008786 + (CA)n Simple_repeat Simple_repeat 2 125 0 182 290 7 0 chr1 5184944 5185082 -277008582 + (CA)n Simple_repeat Simple_repeat 1 139 0 180 238 0 0 chr1 5185120 5185183 -277008481 + (CA)n Simple_repeat Simple_repeat 1 63 0 258 32 0 0 chr1 5185236 5185267 -277008397 + (TC)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr1 5185266 5185292 -277008372 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1187 265 61 82 chr1 5185856 5186397 -277007267 - MER21B LTR ERV1 -149 714 188 2230 106 3 3 chr1 5186397 5186690 -277006974 + AluSx SINE Alu 1 293 -19 1187 265 61 82 chr1 5186690 5186817 -277006847 - MER21B LTR ERV1 -675 188 60 1932 115 0 22 chr1 5187349 5187619 -277006045 - AluSx SINE Alu -14 298 35 273 319 132 24 chr1 5187934 5188185 -277005479 + L2 LINE L2 3021 3298 -15 2973 13 0 0 chr1 5188370 5188686 -277004978 - AluYb8 SINE Alu -2 316 1 200 316 26 0 chr1 5188845 5188921 -277004743 + L2 LINE L2 2292 2369 -945 1584 194 35 58 chr1 5189794 5190171 -277003493 - MLT1A2 LTR MaLR -4 370 3 613 284 77 37 chr1 5191449 5191605 -277002059 + L1MC4 LINE L1 6771 6919 -1123 2187 127 16 3 chr1 5191605 5191913 -277001751 + AluSx SINE Alu 1 312 0 613 284 77 37 chr1 5191913 5192213 -277001451 + L1MC4 LINE L1 6919 7245 -797 1639 174 18 12 chr1 5192224 5192552 -277001112 + MLT1B LTR MaLR 6 335 -55 674 241 119 53 chr1 5192689 5193008 -277000656 + L1MC4 LINE L1 7334 7673 -369 1190 207 171 7 chr1 5193559 5193868 -276999796 + MLT1A1 LTR MaLR 6 365 0 265 164 45 60 chr1 5193904 5193971 -276999693 - MER45 DNA AcHobo -951 89 24 651 150 34 10 chr1 5195039 5195247 -276998417 - L1MB1 LINE L1 0 6168 5923 * 765 191 75 5 chr1 5195246 5195434 -276998230 + L1MB1 LINE L1 5714 5914 -254 3520 37 105 0 chr1 5196450 5196909 -276996755 + L1PA4 LINE L1 5645 6151 -4 339 25 0 0 chr1 5196919 5196959 -276996705 + (A)n Simple_repeat Simple_repeat 1 40 0 820 157 7 41 chr1 5197163 5197181 -276996483 - AluJb SINE Alu -12 300 283 258 32 0 0 chr1 5197181 5197212 -276996452 + (TCCCC)n Simple_repeat Simple_repeat 1 31 0 485 31 0 16 chr1 5197212 5197276 -276996388 + (TTTTC)n Simple_repeat Simple_repeat 5 67 0 820 157 7 41 chr1 5197276 5197403 -276996261 - AluJb SINE Alu -27 285 159 279 0 0 0 chr1 5197448 5197479 -276996185 + (TG)n Simple_repeat Simple_repeat 2 32 0 477 170 21 17 chr1 5199108 5199285 -276994379 - MER20 DNA MER1_type -6 213 3 778 267 5 5 chr1 5200062 5200272 -276993392 + MER58 DNA MER1_type 27 236 -105 297 250 6 11 chr1 5200706 5200886 -276992778 + GA-rich Low_complexity Low_complexity 2 180 0 594 221 194 46 chr1 5203980 5204305 -276989359 + MLT1C LTR MaLR 34 406 -61 1301 289 12 0 chr1 5204396 5204732 -276988932 - MER58B DNA MER1_type -1 340 1 1093 226 50 61 chr1 5207308 5207769 -276985895 + MLT1C LTR MaLR 2 457 -10 370 277 54 0 chr1 5210101 5210213 -276983451 - L2 LINE L2 0 3313 3196 312 231 32 142 chr1 5210355 5210709 -276982955 - MLT1K LTR MaLR -340 248 7 * 1619 191 70 0 chr1 5210708 5211037 -276982627 + MLT2D LTR ERVL 8 359 -55 1046 22 22 43 chr1 5211074 5211258 -276982406 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 333 0 0 0 chr1 5211272 5211309 -276982355 + (TC)n Simple_repeat Simple_repeat 2 38 0 192 97 0 0 chr1 5211325 5211356 -276982308 + (GA)n Simple_repeat Simple_repeat 1 31 0 843 225 28 0 chr1 5212367 5212545 -276981119 - MER5A DNA MER1_type -4 185 3 327 104 0 0 chr1 5213064 5213112 -276980552 + (ATG)n Simple_repeat Simple_repeat 3 50 0 283 375 0 0 chr1 5213368 5213464 -276980200 + L2 LINE L2 2953 3048 -224 693 269 66 0 chr1 5213516 5213713 -276979951 + MER58A DNA MER1_type 1 210 -14 330 353 49 0 chr1 5213770 5213892 -276979772 + L2 LINE L2 3140 3267 -5 2855 233 35 9 chr1 5214243 5214879 -276978785 + MER82 DNA MER2_type 2 653 0 1073 267 50 11 chr1 5215419 5215778 -276977886 + L1MC4a LINE L1 5552 5924 -1884 2385 89 0 19 chr1 5217369 5217685 -276975979 + AluSg SINE Alu 1 310 0 2003 124 6 47 chr1 5218930 5219252 -276974412 + AluSx SINE Alu 1 309 -3 1982 192 5 13 chr1 5219676 5220051 -276973613 + MLT2D LTR ERVL 1 374 -40 411 21 0 0 chr1 5220051 5220099 -276973565 + (CA)n Simple_repeat Simple_repeat 1 48 0 1982 192 5 13 chr1 5220099 5220118 -276973546 + MLT2D LTR ERVL 374 392 -22 335 352 29 0 chr1 5220384 5220489 -276973175 + MIR SINE MIR 72 179 -83 1603 167 4 4 chr1 5221417 5221662 -276972002 + AluJb SINE Alu 2 246 -66 448 315 28 17 chr1 5221756 5221937 -276971727 + MIR SINE MIR 32 214 -48 965 283 114 0 chr1 5222256 5222669 -276970995 + L1MC5 LINE L1 5430 5889 -1919 798 128 138 26 chr1 5222767 5222908 -276970756 + L1MD3 LINE L1 6897 7067 -928 192 40 0 0 chr1 5222908 5222933 -276970731 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 798 128 138 26 chr1 5222933 5222986 -276970678 + L1MD3 LINE L1 7067 7113 -882 338 308 0 0 chr1 5222989 5223080 -276970584 + MLT1F1 LTR MaLR 35 125 -442 2538 213 20 19 chr1 5223080 5223198 -276970466 + L1MD3 LINE L1 7404 7520 -475 2722 107 0 6 chr1 5223198 5223564 -276970100 + THE1B LTR MaLR 1 364 0 2538 213 20 19 chr1 5223564 5224036 -276969628 + L1MD3 LINE L1 7520 7995 0 24 32 0 0 chr1 5224036 5224067 -276969597 + AT_rich Low_complexity Low_complexity 1 31 0 28 29 0 0 chr1 5224201 5224236 -276969428 + AT_rich Low_complexity Low_complexity 1 35 0 302 184 66 0 chr1 5224257 5224333 -276969331 + L1 LINE L1 4924 5004 -1142 578 323 54 17 chr1 5224567 5224990 -276968674 + L1MC5 LINE L1 6415 6852 -960 2254 128 0 6 chr1 5225113 5225426 -276968238 + AluSq SINE Alu 1 311 -2 269 303 62 78 chr1 5225633 5225850 -276967814 + L1M4 LINE L1 4544 4763 -1383 2024 142 0 37 chr1 5225850 5226174 -276967490 + AluSx SINE Alu 1 312 0 269 303 62 78 chr1 5226174 5226646 -276967018 + L1M4 LINE L1 4763 5222 -924 * 4065 212 87 16 chr1 5226636 5227115 -276966549 + L1ME3 LINE L1 4135 4579 -1567 288 0 0 0 chr1 5227115 5227147 -276966517 + (ATTG)n Simple_repeat Simple_repeat 1 32 0 4065 212 87 16 chr1 5227147 5227845 -276965819 + L1ME3 LINE L1 4579 5395 -751 1748 190 19 13 chr1 5227854 5228187 -276965477 + L1MB7 LINE L1 5784 6114 -70 243 0 0 0 chr1 5228187 5228214 -276965450 + (TTTAG)n Simple_repeat Simple_repeat 4 30 0 2190 122 0 0 chr1 5228215 5228503 -276965161 - AluSx SINE Alu -24 288 1 1748 190 19 13 chr1 5228503 5228541 -276965123 + L1MB7 LINE L1 6113 6159 -25 534 307 60 40 chr1 5228655 5229052 -276964612 + L1ME3 LINE L1 5462 5881 -289 2051 134 0 7 chr1 5229133 5229432 -276964232 + AluSx SINE Alu 1 297 -15 241 252 32 89 chr1 5229521 5229644 -276964020 + L1ME3 LINE L1 5969 6084 -78 1964 170 0 0 chr1 5229721 5230009 -276963655 + AluJb SINE Alu 5 292 -20 268 336 51 4 chr1 5230093 5230328 -276963336 + L1M4 LINE L1 4568 4813 -1333 336 281 119 19 chr1 5230400 5230560 -276963104 + L1M4 LINE L1 4937 5112 -1034 3085 157 51 4 chr1 5230638 5231186 -276962478 - MER7C DNA MER2_type -15 587 14 817 98 15 23 chr1 5231761 5231893 -276961771 + MLT1B LTR MaLR 251 381 -9 774 121 21 3 chr1 5232023 5232252 -276961412 + (TCTA)n Simple_repeat Simple_repeat 1 232 0 305 355 24 30 chr1 5232341 5232507 -276961157 + L2 LINE L2 2408 2572 -742 230 51 51 0 chr1 5232771 5232810 -276960854 + (CAGA)n Simple_repeat Simple_repeat 4 44 0 604 136 56 16 chr1 5232838 5233331 -276960333 + (CAGAGA)n Simple_repeat Simple_repeat 1 512 0 287 244 13 13 chr1 5233397 5233475 -276960189 + MLT1K LTR MaLR 484 561 -27 180 135 0 0 chr1 5235259 5235296 -276958368 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 2782 82 3 0 chr1 5240483 5240837 -276952827 - THE1A LTR MaLR 0 355 1 242 272 49 12 chr1 5240884 5240965 -276952699 - L2 LINE L2 -16 3256 3173 360 267 34 27 chr1 5241177 5241323 -276952341 + L2 LINE L2 2205 2351 -963 192 263 42 76 chr1 5241503 5241621 -276952043 + L2 LINE L2 2940 3053 -219 2493 42 0 6 chr1 5243725 5244038 -276949626 + AluY SINE Alu 1 311 0 498 221 47 47 chr1 5244403 5244552 -276949112 - MIR SINE MIR -69 193 45 1557 211 65 51 chr1 5244611 5245123 -276948541 + Charlie1b DNA MER1_type 3 521 -2 5405 123 49 8 chr1 5245269 5246128 -276947536 - L1PA16 LINE L1 0 6166 5273 241 259 37 25 chr1 5246652 5246733 -276946931 - MIR3 SINE MIR -23 185 104 259 290 167 58 chr1 5247392 5247740 -276945924 - L2 LINE L2 0 3272 2887 246 276 0 0 chr1 5248977 5249035 -276944629 + (CAT)n Simple_repeat Simple_repeat 2 59 0 759 278 77 78 chr1 5250139 5250474 -276943190 - MLT1G LTR MaLR -2 588 253 2013 130 3 0 chr1 5250474 5250773 -276942891 - AluSx SINE Alu -3 309 10 759 278 77 78 chr1 5250773 5251012 -276942652 - MLT1G LTR MaLR -337 253 15 214 209 23 0 chr1 5251088 5251131 -276942533 + L2 LINE L2 3210 3253 -19 1788 127 25 38 chr1 5251336 5251652 -276942012 - AluSx SINE Alu 0 312 1 1927 116 3 10 chr1 5251654 5251946 -276941718 - AluJo SINE Alu -22 290 1 2290 78 7 7 chr1 5252791 5253097 -276940567 + AluSq SINE Alu 1 306 -7 1793 156 85 16 chr1 5253738 5254103 -276939561 - MLT1B LTR MaLR 0 390 1 193 219 0 0 chr1 5254717 5254758 -276938906 + L2 LINE L2 2718 2758 -556 878 215 0 6 chr1 5255444 5255602 -276938062 + MIR SINE MIR 21 177 -85 274 133 33 67 chr1 5255674 5255734 -276937930 + MER110A LTR ERV1 81 138 -330 2138 159 30 30 chr1 5255848 5256212 -276937452 + THE1B LTR MaLR 1 364 0 771 263 117 4 chr1 5256226 5256500 -276937164 + MER110 LTR ERV1 173 477 -14 191 36 36 0 chr1 5257793 5257821 -276935843 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 845 222 23 54 chr1 5258626 5258847 -276934817 + MER20 DNA MER1_type 6 219 0 215 320 104 50 chr1 5259641 5259863 -276933801 + MIR SINE MIR 13 246 -16 544 158 30 139 chr1 5259939 5260104 -276933560 + MER103 DNA DNA 8 154 -12 662 308 182 12 chr1 5260105 5260745 -276932919 - L2 LINE L2 -4 3309 2556 1227 243 97 26 chr1 5260806 5261592 -276932072 - L1ME3A LINE L1 -29 6936 6055 326 220 207 21 chr1 5261572 5261775 -276931889 - L1MCc LINE L1 -4887 1536 1341 * 2050 116 24 0 chr1 5262347 5262641 -276931023 - AluSq SINE Alu -12 301 1 904 244 116 0 chr1 5262918 5263193 -276930471 - L2 LINE L2 -773 2541 2235 440 292 87 0 chr1 5263219 5263380 -276930284 - L2 LINE L2 -1034 2280 2106 388 234 19 0 chr1 5263463 5263570 -276930094 - L2 LINE L2 -1201 2113 2005 641 323 32 18 chr1 5263634 5263919 -276929745 - L2 LINE L2 -1174 2140 1852 2445 66 0 0 chr1 5264295 5264599 -276929065 - AluY SINE Alu -7 304 1 20469 111 11 14 chr1 5265190 5269152 -276924512 - L1PA8A LINE L1 0 6131 2183 2163 114 7 0 chr1 5269459 5269765 -276923899 - AluSc SINE Alu -1 308 1 257 277 53 11 chr1 5269826 5269920 -276923744 - HERVL LTR ERVL -4358 1296 1199 419 276 147 73 chr1 5270628 5270983 -276922681 - LTR67 LTR ERVL -175 382 2 26 64 0 0 chr1 5271028 5271075 -276922589 + AT_rich Low_complexity Low_complexity 1 47 0 279 0 0 0 chr1 5271386 5271417 -276922247 + (TC)n Simple_repeat Simple_repeat 1 31 0 186 309 154 40 chr1 5271779 5271928 -276921736 - L2 LINE L2 -591 2723 2558 1429 173 46 140 chr1 5272137 5272182 -276921482 - MLT2D LTR ERVL -1 413 365 306 0 0 0 chr1 5272182 5272216 -276921448 + (TA)n Simple_repeat Simple_repeat 2 35 0 1429 173 46 140 chr1 5272216 5272626 -276921038 - MLT2D LTR ERVL -49 365 1 207 0 0 0 chr1 5272757 5272780 -276920884 + (TC)n Simple_repeat Simple_repeat 1 23 0 204 311 62 62 chr1 5272868 5273029 -276920635 + L3 LINE CR1 1410 1570 -7 4206 78 40 52 chr1 5275911 5276528 -276917136 - LTR66 LTR ERVL 0 610 1 4004 97 7 3 chr1 5276528 5277202 -276916462 - HERVL66 LTR ERVL 0 4329 3569 * 4876 123 6 20 chr1 5277189 5277903 -276915761 - HERVL66 LTR ERVL -972 3357 2654 2852 75 6 0 chr1 5277883 5278243 -276915421 - HERVL66 LTR ERVL -2532 1797 1436 * 8302 98 16 11 chr1 5278243 5278482 -276915182 - HERVL66 LTR ERVL -3199 1130 894 2435 58 6 10 chr1 5278482 5278794 -276914870 - AluY SINE Alu 0 311 1 8302 98 16 11 chr1 5278794 5279678 -276913986 - HERVL66 LTR ERVL -3435 894 1 4429 55 62 5 chr1 5279678 5280255 -276913409 - LTR66 LTR ERVL 0 610 1 384 271 102 83 chr1 5281064 5281437 -276912227 + L2 LINE L2 2933 3312 -1 588 203 117 37 chr1 5282126 5282289 -276911375 - MLT1D LTR MaLR -329 176 1 30 0 0 0 chr1 5283270 5283300 -276910364 + AT_rich Low_complexity Low_complexity 1 30 0 214 310 0 0 chr1 5283482 5283540 -276910124 + L2 LINE L2 3239 3296 -17 297 282 109 0 chr1 5283912 5284022 -276909642 - L2 LINE L2 -4 3309 3188 5626 68 8 0 chr1 5285847 5286564 -276907100 + L1PA8 LINE L1 5444 6166 -6 35 24 0 0 chr1 5286603 5286645 -276907019 + AT_rich Low_complexity Low_complexity 1 42 0 2534 45 0 3 chr1 5287506 5287814 -276905850 + AluY SINE Alu 1 307 -4 220 239 171 11 chr1 5289213 5289301 -276904363 - MIR SINE MIR -130 132 31 4057 163 85 11 chr1 5291774 5292512 -276901152 - MER54B LTR ERVL 0 793 1 1246 313 115 34 chr1 5293867 5294762 -276898902 + L2 LINE L2 1854 2821 -493 1481 214 54 0 chr1 5294899 5295231 -276898433 - MLT1B LTR MaLR -4 386 37 1920 128 0 21 chr1 5295383 5295708 -276897956 - AluSq SINE Alu 0 319 1 1262 237 121 71 chr1 5296299 5296780 -276896884 - MLT1D LTR MaLR 0 505 1 188 303 84 58 chr1 5297762 5297917 -276895747 + MIR3 SINE MIR 4 162 -46 327 317 122 10 chr1 5297917 5298122 -276895542 + MIR SINE MIR 20 247 -15 241 336 0 44 chr1 5298694 5298807 -276894857 - MLT1K LTR MaLR 0 588 481 1089 261 37 35 chr1 5298844 5299184 -276894480 - MLT1C LTR MaLR -3 464 121 1498 179 17 21 chr1 5299184 5299475 -276894189 - AluJo SINE Alu -22 290 1 1089 261 37 35 chr1 5299475 5299509 -276894155 - MLT1C LTR MaLR -346 121 89 263 279 0 0 chr1 5300563 5300631 -276893033 + C-rich Low_complexity Low_complexity 1 68 0 192 217 17 40 chr1 5305113 5305198 -276888466 - MIR SINE MIR -122 86 34 713 259 80 5 chr1 5306284 5306496 -276887168 + L1ME2 LINE L1 5937 6164 0 196 51 26 26 chr1 5306626 5306665 -276886999 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 744 50 0 0 chr1 5306672 5306772 -276886892 - L1PA5 LINE L1 -112 6042 5943 354 226 18 113 chr1 5306827 5306995 -276886669 - L1MCa LINE L1 -4348 2078 1927 2154 108 0 3 chr1 5307033 5307338 -276886326 - AluSq SINE Alu -9 304 1 309 274 55 48 chr1 5307366 5307512 -276886152 + L1MCa LINE L1 1933 2079 -4347 1692 213 75 59 chr1 5307664 5308245 -276885419 + MER114 LTR ERV 2 595 -53 1623 184 37 0 chr1 5308245 5308539 -276885125 + AluJb SINE Alu 1 305 -7 1692 213 75 59 chr1 5308539 5308581 -276885083 + MER114 LTR ERV 595 635 -13 1926 138 0 0 chr1 5308767 5309095 -276884569 + AluSq SINE Alu 1 328 0 2385 75 0 3 chr1 5309377 5309682 -276883982 - AluSq SINE Alu -9 304 1 1847 129 0 7 chr1 5309759 5310038 -276883626 - AluSx SINE Alu -15 297 21 540 302 123 19 chr1 5312221 5312529 -276881135 - MLT1J2 LTR MaLR -40 410 71 1906 181 101 15 chr1 5312668 5313066 -276880598 - MER70A LTR ERVL 0 472 41 316 319 9 26 chr1 5313249 5313365 -276880299 - MIR SINE MIR -136 126 13 209 300 134 69 chr1 5314178 5314455 -276879209 - L2 LINE L2 0 3272 2978 356 287 43 24 chr1 5314752 5314916 -276878748 - MER63A DNA MER1_type -2 208 42 266 219 98 12 chr1 5316200 5316212 -276877452 + MER53 DNA DNA 1 19 -170 265 218 81 11 chr1 5316212 5316299 -276877365 - MER53 DNA DNA -3 186 94 279 180 0 16 chr1 5316549 5316610 -276877054 + MER53 DNA DNA 128 187 -2 202 218 55 0 chr1 5316615 5316670 -276876994 + MIR SINE MIR 88 145 -63 903 223 130 31 chr1 5317340 5317826 -276875838 + MLT1E1 LTR MaLR 1 648 -6 225 0 0 0 chr1 5317981 5318006 -276875658 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 777 291 57 10 chr1 5319268 5319564 -276874100 - MER77 LTR ERV1 -4 601 292 1659 201 93 50 chr1 5320189 5320672 -276872992 - MLT1D LTR MaLR -1 504 1 184 354 41 34 chr1 5320710 5320857 -276872807 + L2 LINE L2 3100 3247 -25 343 136 60 87 chr1 5320884 5321068 -276872596 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 407 5 0 135 chr1 5321127 5321312 -276872352 + (CA)n Simple_repeat Simple_repeat 1 160 0 328 145 51 96 chr1 5321336 5321709 -276871955 + (CACAG)n Simple_repeat Simple_repeat 1 356 0 1617 213 116 16 chr1 5322048 5322489 -276871175 - MER31A LTR ERV1 0 485 1 1956 127 38 0 chr1 5323962 5324253 -276869411 - AluSx SINE Alu -3 309 8 223 291 0 0 chr1 5324492 5324547 -276869117 + (CCCA)n Simple_repeat Simple_repeat 1 55 0 261 242 0 16 chr1 5324822 5324884 -276868780 + GA-rich Low_complexity Low_complexity 1 61 0 733 302 41 16 chr1 5325306 5325548 -276868116 - MIR SINE MIR -13 249 2 189 0 0 0 chr1 5325766 5325787 -276867877 + (T)n Simple_repeat Simple_repeat 1 21 0 1820 125 29 11 chr1 5327415 5327577 -276866087 - AluSx SINE Alu 0 303 132 2007 92 32 35 chr1 5327577 5327891 -276865773 - AluSq SINE Alu 0 313 1 1820 125 29 11 chr1 5327891 5328021 -276865643 - AluSx SINE Alu -171 132 6 1777 163 13 0 chr1 5328062 5328368 -276865296 - AluJb SINE Alu -2 310 1 319 302 0 8 chr1 5328625 5328754 -276864910 - L1M LINE L1 -747 5415 5288 191 180 60 0 chr1 5328775 5328825 -276864839 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 429 260 57 0 chr1 5328825 5329002 -276864662 - L1M4 LINE L1 -874 5272 5086 198 71 0 0 chr1 5329058 5329086 -276864578 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 184 340 0 0 chr1 5329322 5329372 -276864292 + MIR SINE MIR 141 190 -72 224 59 29 0 chr1 5329435 5329469 -276864195 + (CAT)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr1 5329599 5329621 -276864043 + AT_rich Low_complexity Low_complexity 1 22 0 1159 208 16 43 chr1 5329681 5330003 -276863661 - Charlie1 DNA MER1_type -303 2458 2146 1015 206 45 96 chr1 5330004 5330358 -276863306 - L1MB7 LINE L1 -2 6182 5847 274 211 0 0 chr1 5330421 5330478 -276863186 - Charlie1 DNA MER1_type -298 2463 2407 693 227 71 15 chr1 5330478 5330676 -276862988 - L1MB7 LINE L1 -322 5862 5654 1459 218 40 37 chr1 5330772 5331152 -276862512 + MLT1B LTR MaLR 1 381 -9 322 338 10 2 chr1 5332378 5332487 -276861177 - MIR SINE MIR -59 149 53 215 102 0 41 chr1 5332505 5332554 -276861110 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 2092 110 7 0 chr1 5333412 5333704 -276859960 - AluSx SINE Alu -18 294 1 682 303 14 91 chr1 5333828 5334347 -276859317 - MLT1J LTR MaLR -8 503 25 227 329 0 0 chr1 5334924 5334994 -276858670 + MIR SINE MIR 141 210 -52 972 182 0 3 chr1 5335385 5336097 -276857567 + (TGG)n Simple_repeat Simple_repeat 1 709 0 1302 156 0 0 chr1 5336134 5336358 -276857306 - L1MA4 LINE L1 -5 6295 6072 907 268 36 13 chr1 5336783 5337085 -276856579 + MLT1I LTR MaLR 98 406 -3 225 196 0 0 chr1 5339701 5339747 -276853917 + (TG)n Simple_repeat Simple_repeat 2 47 0 1974 122 0 14 chr1 5339938 5340261 -276853403 + AluSx SINE Alu 1 319 0 1165 253 82 5 chr1 5340538 5340965 -276852699 + Charlie4a DNA MER1_type 25 484 -24 259 308 28 9 chr1 5341378 5341485 -276852179 - MIR SINE MIR -118 144 36 245 241 25 51 chr1 5342862 5343020 -276850644 + G-rich Low_complexity Low_complexity 3 156 0 31 88 0 0 chr1 5343031 5343111 -276850553 + GC_rich Low_complexity Low_complexity 1 80 0 27 49 0 0 chr1 5343480 5343521 -276850143 + GC_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr1 5343568 5343612 -276850052 + GC_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr1 5343625 5343660 -276850004 + GC_rich Low_complexity Low_complexity 1 35 0 49 66 0 0 chr1 5344108 5344199 -276849465 + GC_rich Low_complexity Low_complexity 1 91 0 22 0 0 0 chr1 5344465 5344487 -276849177 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 5346053 5346075 -276847589 + (TGGGGG)n Simple_repeat Simple_repeat 2 23 0 1371 176 30 62 chr1 5348015 5348065 -276845599 + L1MD1 LINE L1 5885 5935 -307 2541 168 8 70 chr1 5348065 5348583 -276845081 + MER66B LTR ERV1 1 486 0 1371 176 30 62 chr1 5348583 5348902 -276844762 + L1MD1 LINE L1 5935 6242 0 734 257 39 6 chr1 5349723 5349902 -276843762 - MIR SINE MIR -70 192 8 24 0 0 0 chr1 5350232 5350256 -276843408 + AT_rich Low_complexity Low_complexity 1 24 0 273 29 0 0 chr1 5350388 5350422 -276843242 + (TG)n Simple_repeat Simple_repeat 1 34 0 1034 311 50 10 chr1 5350426 5350924 -276842740 - L1MB7 LINE L1 -16 6168 5651 793 194 0 0 chr1 5351486 5351620 -276842044 - AluJo SINE Alu -178 134 1 695 254 100 12 chr1 5352329 5352569 -276841095 - MIR SINE MIR -1 261 1 183 358 154 0 chr1 5354075 5354198 -276839466 - L2 LINE L2 -5 3308 3167 2201 134 24 0 chr1 5355743 5356071 -276837593 - MER1B DNA MER1_type 0 337 2 1999 134 3 0 chr1 5356274 5356566 -276837098 + AluSx SINE Alu 1 293 -19 372 88 0 0 chr1 5356664 5356721 -276836943 + (TG)n Simple_repeat Simple_repeat 2 58 0 403 270 56 27 chr1 5356804 5356962 -276836702 - MIR SINE MIR -35 173 51 2377 206 34 9 chr1 5357390 5357640 -276836024 - L1MB5 LINE L1 -1 6173 5931 2166 107 55 30 chr1 5357640 5358003 -276835661 - THE1C LTR MaLR -3 372 1 2377 206 34 9 chr1 5358003 5358276 -276835388 - L1MB5 LINE L1 -243 5931 5637 340 250 103 17 chr1 5358290 5358406 -276835258 + MIR SINE MIR 22 147 -115 2175 116 0 0 chr1 5359428 5359729 -276833935 + AluSx SINE Alu 1 301 -11 1007 220 31 101 chr1 5361103 5361625 -276832039 + MLT1E2 LTR MaLR 61 626 0 239 321 0 12 chr1 5361684 5361768 -276831896 + CT-rich Low_complexity Low_complexity 2 84 0 453 179 50 184 chr1 5362264 5362482 -276831182 + MER53 DNA DNA 1 189 0 245 95 0 24 chr1 5362619 5362661 -276831003 + MER58A DNA MER1_type 42 82 -25 538 216 196 0 chr1 5362711 5362864 -276830800 + MER58A DNA MER1_type 42 224 0 1645 268 47 21 chr1 5363541 5364075 -276829589 - MER77 LTR ERV1 -4 601 54 2268 90 0 3 chr1 5365217 5365516 -276828148 + AluSx SINE Alu 1 298 -14 946 200 73 5 chr1 5366673 5366893 -276826771 - MLT1E LTR MaLR -54 539 305 761 219 78 10 chr1 5366933 5367138 -276826526 - MLT1E LTR MaLR -373 220 2 422 267 80 40 chr1 5367169 5367345 -276826319 - MIR SINE MIR 0 262 80 462 340 82 22 chr1 5367488 5367720 -276825944 + L2 LINE L2 3054 3299 -14 189 0 0 0 chr1 5367724 5367745 -276825919 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 1741 186 76 14 chr1 5367814 5368111 -276825553 - MLT1C LTR MaLR 0 467 133 2054 215 50 45 chr1 5368111 5368151 -276825513 - MLT2B1 LTR ERVL 0 520 482 396 0 0 0 chr1 5368151 5368195 -276825469 + (TG)n Simple_repeat Simple_repeat 2 45 0 2054 215 50 45 chr1 5368195 5368671 -276824993 - MLT2B1 LTR ERVL -38 482 1 1741 186 76 14 chr1 5368671 5368808 -276824856 - MLT1C LTR MaLR -334 133 6 290 277 125 23 chr1 5370099 5370228 -276823436 + MIR SINE MIR 17 157 -56 505 246 127 0 chr1 5370285 5370427 -276823237 - MIR SINE MIR -75 187 28 294 194 0 0 chr1 5371010 5371077 -276822587 + (ATG)n Simple_repeat Simple_repeat 2 68 0 750 198 0 0 chr1 5371097 5371274 -276822390 + (ATG)n Simple_repeat Simple_repeat 3 179 0 533 333 53 0 chr1 5371430 5371619 -276822045 + MIR SINE MIR 36 234 -28 621 231 34 8 chr1 5371642 5371826 -276821838 - MER5A DNA MER1_type -7 171 1 215 243 0 43 chr1 5372315 5372385 -276821279 + GA-rich Low_complexity Low_complexity 1 67 0 197 309 161 0 chr1 5373030 5373111 -276820553 - MIR SINE MIR -119 143 50 487 221 26 19 chr1 5374553 5374693 -276818971 - MLT1B LTR MaLR 0 467 358 191 310 127 28 chr1 5374722 5374870 -276818794 + MIR SINE MIR 33 144 -64 273 119 0 0 chr1 5376134 5376176 -276817488 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 2385 88 3 0 chr1 5376833 5377140 -276816524 + AluSx SINE Alu 1 308 -4 232 279 139 0 chr1 5377195 5377274 -276816390 - MIR SINE MIR -62 200 111 293 303 151 7 chr1 5378924 5379076 -276814588 - MIR SINE MIR -8 254 81 207 205 0 0 chr1 5380503 5380542 -276813122 - MIR SINE MIR -113 149 111 312 326 137 0 chr1 5380973 5381148 -276812516 + L2 LINE L2 2967 3165 -107 1211 241 90 6 chr1 5381952 5382317 -276811347 - MSTD LTR MaLR 0 396 1 285 312 24 16 chr1 5382761 5382886 -276810778 - L2 LINE L2 0 3272 3147 474 189 41 0 chr1 5383366 5383488 -276810176 + MER20 DNA MER1_type 5 131 -88 1546 174 87 3 chr1 5383884 5384229 -276809435 - MLT1B LTR MaLR -16 374 1 402 300 16 6 chr1 5385016 5385434 -276808230 + (TG)n Simple_repeat Simple_repeat 1 422 0 281 294 22 22 chr1 5385474 5385610 -276808054 + (TG)n Simple_repeat Simple_repeat 1 136 0 357 304 62 46 chr1 5385612 5385806 -276807858 + L3 LINE CR1 1274 1470 -107 255 385 15 0 chr1 5385936 5386071 -276807593 + MIR SINE MIR 36 172 -90 195 286 50 67 chr1 5386882 5387001 -276806663 - L3 LINE CR1 -5 1572 1456 356 356 34 7 chr1 5388132 5388281 -276805383 + MIR SINE MIR 110 262 0 342 269 76 70 chr1 5388646 5388817 -276804847 - MER5B DNA MER1_type -5 173 2 227 373 25 25 chr1 5389644 5389762 -276803902 - MIR SINE MIR -70 138 21 718 174 71 0 chr1 5389912 5390067 -276803597 - MER20 DNA MER1_type -48 171 6 7706 30 0 0 chr1 5392500 5393518 -276800146 - L1PA3 LINE L1 -1 6154 5136 1539 15 0 0 chr1 5393518 5393719 -276799945 + L1PA3 LINE L1 4930 5130 -1016 306 0 0 0 chr1 5393738 5393772 -276799892 + (T)n Simple_repeat Simple_repeat 1 34 0 1470 279 74 19 chr1 5393783 5394403 -276799261 + L1MC3 LINE L1 7129 7782 -3 1881 271 78 13 chr1 5395620 5396298 -276797366 - L1MB7 LINE L1 -18 6166 5445 2348 83 0 0 chr1 5396306 5396608 -276797056 - AluSc SINE Alu -7 302 1 343 314 6 6 chr1 5397613 5397785 -276795879 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 320 262 6 16 chr1 5398380 5398701 -276794963 + (CA)n Simple_repeat Simple_repeat 1 318 0 361 308 0 7 chr1 5398736 5398879 -276794785 + (CA)n Simple_repeat Simple_repeat 1 142 0 22 35 0 0 chr1 5400371 5400400 -276793264 + GC_rich Low_complexity Low_complexity 1 29 0 216 111 0 0 chr1 5400862 5400898 -276792766 + (CCA)n Simple_repeat Simple_repeat 1 36 0 206 331 48 28 chr1 5401473 5401618 -276792046 + L3b LINE CR1 1244 1391 -192 265 395 8 8 chr1 5403239 5403363 -276790301 + L3b LINE CR1 1328 1451 -132 363 366 45 18 chr1 5403625 5403746 -276789918 + MIR SINE MIR 33 164 -98 2071 118 10 3 chr1 5403746 5404042 -276789622 + AluSp SINE Alu 1 298 -15 363 366 45 18 chr1 5404042 5404144 -276789520 + MIR SINE MIR 164 262 0 495 325 123 5 chr1 5404618 5404821 -276788843 + MIR SINE MIR 36 262 0 897 168 0 0 chr1 5404834 5405013 -276788651 + (ATG)n Simple_repeat Simple_repeat 1 179 0 509 185 8 0 chr1 5405025 5405144 -276788520 + (ATG)n Simple_repeat Simple_repeat 1 120 0 2269 105 7 0 chr1 5406819 5407123 -276786541 - AluSc SINE Alu -3 306 1 232 326 33 22 chr1 5407960 5408052 -276785612 + MIR3 SINE MIR 95 187 -21 191 406 41 16 chr1 5408849 5408972 -276784692 + MIR SINE MIR 78 203 -59 210 193 53 18 chr1 5409542 5409599 -276784065 - MIR SINE MIR -130 78 20 558 314 73 55 chr1 5410082 5410588 -276783076 - MER20B DNA MER1_type -7 776 262 623 255 176 5 chr1 5410858 5411159 -276782505 - MLT1C LTR MaLR -10 495 129 185 297 187 65 chr1 5411450 5412267 -276781397 - L2 LINE L2 -823 2491 1575 1805 192 41 0 chr1 5413971 5414345 -276779319 - MLT1B LTR MaLR 0 467 1 296 258 65 21 chr1 5414969 5415062 -276778602 - MER5A DNA MER1_type -29 160 64 260 225 75 83 chr1 5414972 5415092 -276778572 + MER5A DNA MER1_type 44 162 -27 * 687 241 162 98 chr1 5415950 5416493 -276777171 + MLT1E LTR MaLR 11 588 -5 1200 211 60 3 chr1 5417856 5418154 -276775510 - MLT1B LTR MaLR -71 319 5 396 223 86 22 chr1 5418163 5418302 -276775362 - MLT1C LTR MaLR -313 154 7 23 0 0 0 chr1 5419377 5419400 -276774264 + AT_rich Low_complexity Low_complexity 1 23 0 2342 106 0 0 chr1 5419411 5419723 -276773941 - AluSx SINE Alu 0 312 1 288 314 74 16 chr1 5421778 5421899 -276771765 - L2 LINE L2 0 3272 3145 472 269 66 28 chr1 5422642 5422824 -276770840 - MIR SINE MIR -27 235 47 555 271 90 6 chr1 5424328 5424505 -276769159 + MIR SINE MIR 60 251 -11 243 338 14 50 chr1 5424931 5425070 -276768594 + L2 LINE L2 3180 3313 0 1778 156 3 29 chr1 5425954 5426269 -276767395 + AluJo SINE Alu 1 307 -5 315 363 131 2 chr1 5426799 5427210 -276766454 - L2 LINE L2 -340 2974 2511 217 200 0 33 chr1 5428048 5428108 -276765556 + T-rich Low_complexity Low_complexity 2 59 0 2834 186 16 27 chr1 5428356 5428846 -276764818 + L1MB3 LINE L1 5640 6125 -58 2483 46 0 3 chr1 5428846 5429148 -276764516 + AluY SINE Alu 1 301 -10 2834 186 16 27 chr1 5429148 5429206 -276764458 + L1MB3 LINE L1 6125 6182 -1 886 251 171 6 chr1 5429556 5429907 -276763757 - MLT1C LTR MaLR -6 461 53 2681 233 106 6 chr1 5429946 5430852 -276762812 + L1MC4 LINE L1 6568 7668 -374 222 91 0 0 chr1 5431881 5431914 -276761750 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 312 188 0 0 chr1 5432932 5432996 -276760668 + (CA)n Simple_repeat Simple_repeat 1 64 0 226 328 16 8 chr1 5433036 5433158 -276760506 + (CA)n Simple_repeat Simple_repeat 1 123 0 249 257 28 46 chr1 5434215 5434324 -276759340 + MIR SINE MIR 46 152 -110 1260 241 55 40 chr1 5434332 5434785 -276758879 - MLT1C LTR MaLR -1 466 7 185 369 131 6 chr1 5435859 5436035 -276757629 + L2 LINE L2 1046 1243 -2071 2081 116 7 13 chr1 5436050 5436360 -276757304 + AluSx SINE Alu 1 308 -4 2322 106 0 0 chr1 5436808 5437120 -276756544 + AluSx SINE Alu 1 312 0 743 245 38 52 chr1 5437120 5437332 -276756332 + MLT1A1 LTR MaLR 126 334 -31 198 353 43 9 chr1 5437600 5437716 -276755948 + MIR SINE MIR 27 146 -62 278 344 0 6 chr1 5438087 5438244 -276755420 + (TG)n Simple_repeat Simple_repeat 2 157 0 297 222 0 0 chr1 5438297 5438396 -276755268 + (TG)n Simple_repeat Simple_repeat 2 100 0 258 250 0 0 chr1 5438507 5438595 -276755069 + (TG)n Simple_repeat Simple_repeat 1 88 0 257 291 111 34 chr1 5439834 5439951 -276753713 - L2 LINE L2 0 3272 3147 358 194 10 10 chr1 5440476 5440574 -276753090 + GA-rich Low_complexity Low_complexity 3 100 0 189 247 54 86 chr1 5441656 5441749 -276751915 - MIR3 SINE MIR -48 160 71 24 77 0 0 chr1 5441783 5441835 -276751829 + AT_rich Low_complexity Low_complexity 1 52 0 257 289 43 68 chr1 5441856 5441916 -276751748 - L1MCc LINE L1 -4914 1509 1449 2240 94 3 0 chr1 5441916 5442214 -276751450 - AluSp SINE Alu -14 299 1 257 289 43 68 chr1 5442214 5442388 -276751276 - L1MCc LINE L1 -4974 1449 1281 1264 261 59 0 chr1 5442406 5442728 -276750936 + MER58B DNA MER1_type 1 341 0 2501 153 10 72 chr1 5443960 5444477 -276749187 - MER31A LTR ERV1 0 485 1 295 200 158 42 chr1 5445036 5445131 -276748533 + MER103 DNA DNA 17 122 -44 280 280 8 51 chr1 5445670 5445788 -276747876 - MLT1H LTR MaLR -196 353 241 382 282 13 39 chr1 5446005 5446161 -276747503 + L2 LINE L2 3161 3312 -1 2398 135 13 21 chr1 5446196 5446574 -276747090 + THE1C LTR MaLR 1 375 0 2366 99 24 44 chr1 5446662 5447045 -276746619 - THE1C LTR MaLR 0 375 1 654 211 0 0 chr1 5448536 5448716 -276744948 + (TG)n Simple_repeat Simple_repeat 1 180 0 253 224 75 0 chr1 5449244 5449311 -276744353 - MER58A DNA MER1_type 0 224 153 3378 96 7 20 chr1 5449907 5450366 -276743298 - MLT2A2 LTR ERVL 0 453 1 836 91 0 0 chr1 5450366 5450487 -276743177 - HERVL-A2 LTR ERVL 0 5654 5534 1629 236 102 18 chr1 5450641 5451094 -276742570 + MER77 LTR ERV1 108 598 -7 270 273 231 0 chr1 5451102 5451223 -276742441 + MIR SINE MIR 81 229 -33 490 236 28 21 chr1 5451445 5451589 -276742075 - MER20 DNA MER1_type -48 171 27 1313 188 4 4 chr1 5451819 5452053 -276741611 + MLT2B2 LTR ERVL 1 234 -281 514 199 11 28 chr1 5452064 5452240 -276741424 + CT-rich Low_complexity Low_complexity 1 173 0 1129 199 19 25 chr1 5452251 5452566 -276741098 + MLT2B2 LTR ERVL 247 515 0 1080 211 9 5 chr1 5454451 5454664 -276739000 + MER58A DNA MER1_type 7 220 -4 749 206 9 0 chr1 5455549 5455891 -276737773 + (CAT)n Simple_repeat Simple_repeat 1 345 0 941 163 6 0 chr1 5455903 5456081 -276737583 + (CAT)n Simple_repeat Simple_repeat 1 179 0 26 50 0 0 chr1 5460407 5460447 -276733217 + AT_rich Low_complexity Low_complexity 1 40 0 274 211 3 0 chr1 5464547 5464613 -276729051 - MIR SINE MIR -55 153 86 369 226 38 19 chr1 5464701 5464807 -276728857 - MIR SINE MIR -122 140 33 218 104 0 21 chr1 5466361 5466409 -276727255 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 566 51 13 0 chr1 5466914 5466992 -276726672 + (TC)n Simple_repeat Simple_repeat 2 80 0 771 77 0 0 chr1 5467666 5467770 -276725894 - AluY SINE Alu 0 311 208 227 254 8 108 chr1 5467965 5468095 -276725569 + MER94 DNA DNA 4 120 -14 950 226 39 42 chr1 5468161 5468205 -276725459 - L1MB3 LINE L1 -3 6180 6137 2196 81 44 0 chr1 5468205 5468500 -276725164 + AluSx SINE Alu 1 308 -4 950 226 39 42 chr1 5468500 5468738 -276724926 - L1MB3 LINE L1 -46 6137 5899 1449 128 22 0 chr1 5468962 5469189 -276724475 - AluSg/x SINE Alu 0 312 81 285 323 31 23 chr1 5469653 5469783 -276723881 + MER5A DNA MER1_type 18 148 -41 * 361 273 45 30 chr1 5469680 5469812 -276723852 - MER5A DNA MER1_type -32 157 24 241 26 53 0 chr1 5470908 5470946 -276722718 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 213 214 0 0 chr1 5471352 5471394 -276722270 + (CATA)n Simple_repeat Simple_repeat 4 45 0 217 246 15 31 chr1 5471539 5471604 -276722060 + (CA)n Simple_repeat Simple_repeat 1 64 0 469 223 46 9 chr1 5471780 5471891 -276721773 + L1MC4 LINE L1 1978 6985 -1337 392 322 0 0 chr1 5471817 5471907 -276721757 - L1MC4 LINE L1 -1339 6703 6614 * 305 294 88 10 chr1 5471898 5472000 -276721664 + L1MC4 LINE L1 6939 7048 -1274 * 192 315 91 55 chr1 5475453 5475672 -276717992 - L2 LINE L2 -2 3270 3044 200 276 0 17 chr1 5475672 5475730 -276717934 + GA-rich Low_complexity Low_complexity 6 62 0 261 0 0 0 chr1 5478130 5478159 -276715505 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 360 0 0 0 chr1 5479259 5479299 -276714365 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 204 184 0 0 chr1 5480843 5480892 -276712772 + A-rich Low_complexity Low_complexity 1 49 0 874 191 91 0 chr1 5481485 5481684 -276711980 + MER20 DNA MER1_type 1 217 -2 1623 174 7 3 chr1 5482181 5482474 -276711190 - AluJo SINE Alu -18 294 1 699 277 40 0 chr1 5483761 5483963 -276709701 + MER20 DNA MER1_type 1 210 -9 1654 171 62 64 chr1 5484137 5484604 -276709060 - MLT1C LTR MaLR 0 467 2 2334 103 57 14 chr1 5487021 5487370 -276706294 + THE1B LTR MaLR 1 364 0 213 315 14 0 chr1 5487881 5487954 -276705710 + CT-rich Low_complexity Low_complexity 2 75 0 554 307 12 0 chr1 5488207 5488370 -276705294 - MIR SINE MIR -18 244 80 1310 177 89 86 chr1 5490551 5490946 -276702718 + MSTD LTR MaLR 1 396 0 449 244 83 24 chr1 5492455 5492687 -276700977 - MLT1F LTR MaLR -5 537 311 222 348 59 17 chr1 5492718 5492836 -276700828 + MIR SINE MIR 108 230 -32 621 359 113 0 chr1 5492858 5493176 -276700488 + L3 LINE CR1 1221 1574 -3 326 310 32 133 chr1 5493250 5493514 -276700150 - L2 LINE L2 0 3272 3062 2441 168 18 18 chr1 5493514 5493948 -276699716 + Tigger2a DNA MER2_type 1 434 0 326 310 32 133 chr1 5493948 5494089 -276699575 - L2 LINE L2 -210 3062 2908 267 321 148 29 chr1 5494255 5494532 -276699132 - L2 LINE L2 -716 2598 2289 2745 291 76 42 chr1 5494629 5495195 -276698469 + L1ME1 LINE L1 68 613 -5783 1809 168 26 0 chr1 5495195 5495499 -276698165 + AluJo SINE Alu 1 312 0 2745 291 76 42 chr1 5495499 5496623 -276697041 + L1ME1 LINE L1 613 1841 -4555 2698 93 50 24 chr1 5496623 5497040 -276696624 + MSTA LTR MaLR 1 428 0 2745 291 76 42 chr1 5497040 5497392 -276696272 + L1ME1 LINE L1 1841 2180 -4216 1093 183 139 40 chr1 5497410 5497711 -276695953 + L1MC1 LINE L1 58 388 -6038 6154 197 31 5 chr1 5497712 5497831 -276695833 + L1MC1 LINE L1 4405 4519 -2094 231 36 0 0 chr1 5497831 5497859 -276695805 + (CA)n Simple_repeat Simple_repeat 1 28 0 6154 197 31 5 chr1 5497859 5499883 -276693781 + L1MC1 LINE L1 4519 6608 -5 7471 242 77 43 chr1 5499892 5500016 -276693648 + L1ME1 LINE L1 2179 2297 -3938 180 0 0 0 chr1 5500016 5500036 -276693628 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 721 241 39 15 chr1 5500037 5500240 -276693424 + MER63A DNA MER1_type 2 209 -1 7471 242 77 43 chr1 5500240 5501651 -276692013 + L1ME1 LINE L1 2297 3659 -2576 360 0 0 0 chr1 5501651 5501691 -276691973 + (CA)n Simple_repeat Simple_repeat 2 41 0 7471 242 77 43 chr1 5501691 5504120 -276689544 + L1ME1 LINE L1 3659 6230 -5 1552 171 13 17 chr1 5504125 5504423 -276689241 - AluJo SINE Alu -15 297 1 5360 81 3 1 chr1 5504735 5505416 -276688248 + LTR8 LTR ERV1 1 682 -9 1972 190 54 30 chr1 5505570 5506113 -276687551 + MLT2A2 LTR ERVL 1 554 0 1580 243 133 39 chr1 5506126 5506211 -276687453 + L1ME3 LINE L1 5264 5340 -830 2629 130 36 25 chr1 5506211 5506687 -276686977 - MER31A LTR ERV1 0 485 5 1580 243 133 39 chr1 5506687 5507012 -276686652 + L1ME3 LINE L1 5340 5633 -537 2476 163 74 0 chr1 5507012 5507447 -276686217 - LTR24 LTR ERV1 0 467 1 1580 243 133 39 chr1 5507447 5507665 -276685999 + L1ME3 LINE L1 5633 5962 -208 3554 112 21 41 chr1 5507747 5508328 -276685336 - LTR24B LTR ERV1 -7 569 1 279 306 8 8 chr1 5508354 5508478 -276685186 + L1ME3 LINE L1 6020 6143 -27 541 260 73 113 chr1 5508480 5509045 -276684619 + LTR48B LTR ERV1 1 542 0 203 282 64 26 chr1 5509120 5509198 -276684466 + MER91B DNA MER1_type 1 81 -109 210 326 22 11 chr1 5509496 5509585 -276684079 - MIR SINE MIR -59 149 60 4280 133 18 32 chr1 5510109 5510825 -276682839 + MER50 LTR ERV1 1 706 -28 761 175 7 35 chr1 5511003 5511029 -276682635 - MER4D LTR ERV1 -7 896 871 2394 162 25 23 chr1 5511029 5511462 -276682202 + MER57B LTR ERV1 1 434 0 761 175 7 35 chr1 5511462 5511578 -276682086 - MER4D LTR ERV1 -32 871 758 1328 112 31 40 chr1 5511602 5511826 -276681838 - MER50 LTR ERV1 -306 428 207 241 302 0 0 chr1 5511826 5511912 -276681752 + L1MC4 LINE L1 6618 6703 -1339 207 0 0 0 chr1 5511914 5511937 -276681727 + (CA)n Simple_repeat Simple_repeat 2 24 0 662 122 10 0 chr1 5511958 5512056 -276681608 - AluSg/x SINE Alu -81 231 133 1887 165 3 0 chr1 5512057 5512366 -276681298 - AluSq SINE Alu -3 310 1 4832 127 10 32 chr1 5512367 5513144 -276680520 - MER4D LTR ERV1 -140 763 4 2554 159 29 31 chr1 5513771 5514275 -276679389 + MER41B LTR ERV1 140 478 0 4689 66 5 0 chr1 5515104 5515692 -276677972 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr1 5515971 5515993 -276677671 + (CA)n Simple_repeat Simple_repeat 2 23 0 302 294 78 39 chr1 5519244 5519397 -276674267 + MIR SINE MIR 70 228 -34 737 247 18 12 chr1 5519672 5519842 -276673822 - MER45A DNA AcHobo 0 178 8 236 240 48 77 chr1 5519911 5520015 -276673649 - MIR SINE MIR -73 189 89 369 270 227 11 chr1 5520160 5520345 -276673319 + MIR SINE MIR 12 236 -26 229 106 21 85 chr1 5520672 5520719 -276672945 + L2 LINE L2 3199 3242 -71 281 118 20 0 chr1 5520721 5520772 -276672892 + MADE1 DNA Mariner 2 53 -27 331 119 119 17 chr1 5520780 5520839 -276672825 + L2 LINE L2 3242 3306 -7 1845 170 5 86 chr1 5521114 5521350 -276672314 - MLT1A1 LTR MaLR -2 363 170 1908 139 7 3 chr1 5521350 5521637 -276672027 - AluSx SINE Alu -24 288 1 1845 170 5 86 chr1 5521637 5521795 -276671869 - MLT1A1 LTR MaLR -195 170 1 2353 134 20 3 chr1 5521894 5522252 -276671412 - THE1B LTR MaLR 0 364 1 1970 177 65 58 chr1 5522444 5522908 -276670756 + MLT1C LTR MaLR 1 467 0 812 275 31 64 chr1 5522912 5523239 -276670425 + MLT1I LTR MaLR 1 316 -93 3379 56 0 77 chr1 5523250 5523290 -276670374 - MLT2A1 LTR ERVL 0 444 403 183 80 0 0 chr1 5523290 5523315 -276670349 + (TA)n Simple_repeat Simple_repeat 1 25 0 3379 56 0 77 chr1 5523315 5523348 -276670316 - MLT2A1 LTR ERVL -41 403 369 252 0 0 0 chr1 5523348 5523376 -276670288 + (TC)n Simple_repeat Simple_repeat 2 29 0 3379 56 0 77 chr1 5523376 5523782 -276669882 - MLT2A1 LTR ERVL -75 369 1 2078 58 11 0 chr1 5523782 5524060 -276669604 - HERVL-A1 LTR ERVL 0 5654 5374 1199 236 45 62 chr1 5525347 5525866 -276667798 + MLT1E3 LTR MaLR 3 601 -23 1404 163 83 18 chr1 5525891 5526167 -276667497 - AluJb SINE Alu -18 294 1 2112 146 42 22 chr1 5527149 5527506 -276666158 - THE1B LTR MaLR 0 364 1 10110 109 82 9 chr1 5527506 5528979 -276664685 - THE1B-int LTR MaLR 0 1580 1 2174 132 36 33 chr1 5528979 5529342 -276664322 - THE1B LTR MaLR 0 364 1 2655 207 100 12 chr1 5529405 5530005 -276663659 + MLT1E1 LTR MaLR 2 654 0 2338 192 65 73 chr1 5530088 5530734 -276662930 - LTR48B LTR ERV1 0 644 4 7834 194 39 42 chr1 5530833 5533253 -276660411 - LTR48B-int LTR ERV1 -159 6172 3712 522 239 0 35 chr1 5533523 5533723 -276659941 - LTR48B-int LTR ERV1 -2378 2493 1745 499 191 9 0 chr1 5533910 5534015 -276659649 - LTR48B-int LTR ERV1 -2878 3453 3348 1983 168 52 5 chr1 5534092 5534461 -276659203 - LTR48B-int LTR ERV1 -2991 3340 2955 5013 201 113 118 chr1 5534494 5534756 -276658908 - LTR48B-int LTR ERV1 -4228 2103 1841 1552 82 5 0 chr1 5534756 5534962 -276658702 - L1PA7 LINE L1 -8 6146 5940 5013 201 113 118 chr1 5534962 5535614 -276658050 - LTR48B-int LTR ERV1 -4490 1841 1187 234 235 59 59 chr1 5535614 5535682 -276657982 - tRNA-Glu-GAG tRNA tRNA -1 74 7 5013 201 113 118 chr1 5535682 5536810 -276656854 - LTR48B-int LTR ERV1 -5144 1187 3 2576 176 37 82 chr1 5536815 5537487 -276656177 - LTR48B LTR ERV1 -1 643 2 302 153 17 0 chr1 5537547 5537606 -276656058 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 376 136 17 0 chr1 5537609 5537668 -276655996 - MLT1E1 LTR MaLR -422 232 173 242 186 114 0 chr1 5537770 5537840 -276655824 - MLT1E1 LTR MaLR -482 172 95 218 257 257 28 chr1 5538079 5538223 -276655441 + MIR SINE MIR 51 227 -35 482 315 67 44 chr1 5539346 5539616 -276654048 - MLT1K LTR MaLR -4 584 309 261 336 171 9 chr1 5539701 5539912 -276653752 + MIR SINE MIR 8 252 -10 189 0 0 0 chr1 5540323 5540344 -276653320 + (CATTG)n Simple_repeat Simple_repeat 5 25 0 315 298 35 18 chr1 5540684 5540798 -276652866 + MIR SINE MIR 90 205 -57 180 125 0 0 chr1 5540889 5540921 -276652743 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 256 330 21 0 chr1 5541376 5541473 -276652191 + MIR SINE MIR 78 176 -86 206 183 0 17 chr1 5541550 5541588 -276652076 + CT-rich Low_complexity Low_complexity 2 40 -20 2419 112 94 5 chr1 5541588 5541981 -276651683 + MSTA LTR MaLR 1 428 0 206 183 0 17 chr1 5541981 5542002 -276651662 + CT-rich Low_complexity Low_complexity 40 60 0 317 157 0 0 chr1 5543286 5543337 -276650327 - MLT2F LTR ERVL 0 663 613 264 245 0 31 chr1 5543341 5543439 -276650225 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 244 163 12 105 chr1 5543439 5543459 -276650205 - MADE1 DNA Mariner 0 80 60 216 0 0 0 chr1 5543459 5543483 -276650181 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 244 163 12 105 chr1 5543483 5543506 -276650158 - MADE1 DNA Mariner -20 60 36 2279 107 3 0 chr1 5543506 5543806 -276649858 + AluSp SINE Alu 1 301 -12 244 163 12 105 chr1 5543806 5543847 -276649817 - MADE1 DNA Mariner -44 36 3 410 285 6 6 chr1 5543849 5544028 -276649636 + (TA)n Simple_repeat Simple_repeat 2 180 0 1702 194 94 11 chr1 5544032 5544393 -276649271 + MSTD LTR MaLR 3 393 -3 279 315 0 0 chr1 5544489 5544632 -276649032 + (TA)n Simple_repeat Simple_repeat 1 143 0 1488 242 24 11 chr1 5544632 5545004 -276648660 - MLT2C1 LTR ERVL -20 377 1 2152 230 63 8 chr1 5545272 5545751 -276647913 - MER70B LTR ERVL -73 505 1 2721 96 6 3 chr1 5545788 5546151 -276647513 + THE1B LTR MaLR 1 364 0 10912 96 34 34 chr1 5546152 5547731 -276645933 + THE1B-int LTR MaLR 2 1580 0 2325 125 17 8 chr1 5547733 5548092 -276645572 + THE1B LTR MaLR 3 364 0 7309 52 0 0 chr1 5548115 5549094 -276644570 - L1PA5 LINE L1 0 6154 5175 42138 63 2 4 chr1 5549105 5552425 -276641239 - L1PA4 LINE L1 0 6155 2851 2473 78 0 3 chr1 5552425 5552734 -276640930 - AluY SINE Alu -3 308 1 42138 63 2 4 chr1 5552734 5555580 -276638084 - L1PA4 LINE L1 -3304 2851 1 182 233 291 12 chr1 5555595 5555681 -276637983 - MIR SINE MIR -113 149 40 207 309 0 0 chr1 5555790 5555869 -276637795 + MIR SINE MIR 70 147 -61 569 233 0 6 chr1 5556642 5556822 -276636842 + CT-rich Low_complexity Low_complexity 2 180 0 283 255 59 10 chr1 5558288 5558390 -276635274 - MIR SINE MIR -72 190 84 2015 176 50 31 chr1 5558478 5558899 -276634765 + MLT1C LTR MaLR 2 430 -37 438 173 27 13 chr1 5559807 5559957 -276633707 + (CA)n Simple_repeat Simple_repeat 2 153 0 192 200 0 0 chr1 5561225 5561265 -276632399 + CT-rich Low_complexity Low_complexity 1 40 0 861 227 36 18 chr1 5562601 5562826 -276630838 - MLT1A1 LTR MaLR 0 365 137 1816 175 71 76 chr1 5562829 5563209 -276630455 - MSTB1 LTR MaLR 0 432 53 7236 58 0 2 chr1 5563209 5564439 -276629225 - L1PA6 LINE L1 0 6154 4923 1816 175 71 76 chr1 5564439 5564492 -276629172 - MSTB1 LTR MaLR -379 53 1 832 131 15 7 chr1 5564492 5564628 -276629036 - MLT1A1 LTR MaLR -225 140 4 2406 113 34 6 chr1 5565800 5566153 -276627511 + THE1B LTR MaLR 1 363 -1 2464 129 60 27 chr1 5566743 5567255 -276626409 + MLT2A2 LTR ERVL 3 554 0 494 322 40 5 chr1 5568692 5568901 -276624763 + MIR SINE MIR 13 226 -36 21 36 0 0 chr1 5568949 5568977 -276624687 + AT_rich Low_complexity Low_complexity 1 28 0 205 388 13 40 chr1 5570781 5570933 -276622731 - MIR SINE MIR -81 181 34 1874 243 67 47 chr1 5571135 5572255 -276621409 + HAL1 LINE L1 25 1200 -1307 925 195 25 66 chr1 5572331 5572572 -276621092 - MIR SINE MIR -29 233 3 1683 244 69 103 chr1 5572598 5573632 -276620032 + HAL1 LINE L1 1280 2275 -232 2139 125 14 0 chr1 5573632 5573929 -276619735 + AluSg SINE Alu 1 301 -9 1683 244 69 103 chr1 5573929 5574001 -276619663 + HAL1 LINE L1 2275 2348 -159 417 92 0 0 chr1 5574477 5574542 -276619122 + L1PA8 LINE L1 6108 6172 0 331 175 12 12 chr1 5574558 5574638 -276619026 + HAL1 LINE L1 2316 2395 -112 5647 105 8 5 chr1 5574705 5575503 -276618161 - L1PA13 LINE L1 -2 6161 5362 1312 184 23 13 chr1 5575503 5575812 -276617852 + L1P LINE L1 3064 3375 -2771 240 246 18 0 chr1 5575804 5575861 -276617803 + HAL1 LINE L1 2440 2497 -10 * 233 282 163 19 chr1 5575893 5576102 -276617562 + L1ME4a LINE L1 5815 6053 -68 1989 161 33 41 chr1 5576606 5576973 -276616691 - THE1B LTR MaLR 0 364 1 678 299 30 5 chr1 5577251 5577452 -276616212 - MER63A DNA MER1_type -4 206 1 204 264 42 14 chr1 5578266 5578338 -276615326 - L2 LINE L2 -5 3308 3235 1782 197 8 31 chr1 5579297 5579653 -276614011 - MSTD LTR MaLR -48 348 1 1782 246 59 17 chr1 5579662 5580239 -276613425 + L1ME2 LINE L1 5318 5918 -246 384 292 92 20 chr1 5580363 5580420 -276613244 + MLT1H LTR MaLR 23 74 -335 557 113 0 0 chr1 5580420 5580500 -276613164 - MADE1 DNA Mariner 0 80 1 384 292 92 20 chr1 5580500 5580697 -276612967 + MLT1H LTR MaLR 74 269 -140 307 308 77 8 chr1 5580734 5580864 -276612800 + MLT1H LTR MaLR 411 549 0 2142 118 16 3 chr1 5581399 5581705 -276611959 + AluY SINE Alu 2 311 0 1926 181 20 45 chr1 5581834 5582286 -276611378 + L1MB3 LINE L1 5740 6179 -4 2216 110 10 0 chr1 5582318 5582610 -276611054 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 5583670 5583692 -276609972 + (CA)n Simple_repeat Simple_repeat 2 23 0 1839 182 20 47 chr1 5584255 5584444 -276609220 + MLT1B LTR MaLR 1 194 -196 2199 121 0 0 chr1 5584444 5584741 -276608923 + AluSg1 SINE Alu 1 297 -12 1839 182 20 47 chr1 5584741 5584952 -276608712 + MLT1B LTR MaLR 194 390 0 1931 146 58 28 chr1 5585950 5586314 -276607350 + THE1C LTR MaLR 1 375 0 1585 200 104 0 chr1 5587602 5587947 -276605717 - MLT1B LTR MaLR 0 390 10 365 303 35 21 chr1 5588079 5588224 -276605440 + L2 LINE L2 3126 3272 0 2182 142 27 33 chr1 5589216 5589582 -276604082 - THE1B LTR MaLR 0 364 1 11995 95 6 1 chr1 5589582 5591154 -276602510 - THE1B-int LTR MaLR 0 1580 1 2150 144 31 11 chr1 5591154 5591509 -276602155 - THE1B LTR MaLR 0 364 3 333 282 162 7 chr1 5591514 5591656 -276602008 + MIR SINE MIR 85 248 -14 318 320 107 78 chr1 5592036 5592386 -276601278 - L1MEc LINE L1 -4207 2103 1765 1250 58 0 0 chr1 5592386 5592540 -276601124 - L1PA8 LINE L1 -6 6166 6013 318 320 107 78 chr1 5592540 5592919 -276600745 - L1MEc LINE L1 -4545 1765 1353 238 308 47 18 chr1 5593007 5593176 -276600488 - L1MEc LINE L1 -4863 1256 1083 26 0 0 0 chr1 5593367 5593393 -276600271 + AT_rich Low_complexity Low_complexity 1 26 0 211 105 0 88 chr1 5593744 5593801 -276599863 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2482 125 22 5 chr1 5594234 5594603 -276599061 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 5594994 5595019 -276598645 + AT_rich Low_complexity Low_complexity 1 25 0 2373 108 3 0 chr1 5595047 5595354 -276598310 + AluSc SINE Alu 1 308 -1 1911 191 3 6 chr1 5595379 5595735 -276597929 - MLT1A1 LTR MaLR -7 358 4 453 261 48 107 chr1 5597317 5597496 -276596168 - MIR SINE MIR -3 259 100 2321 116 0 0 chr1 5597496 5597799 -276595865 + AluSg SINE Alu 1 303 -7 453 261 48 107 chr1 5597799 5597891 -276595773 - MIR SINE MIR -162 100 4 1259 259 144 39 chr1 5598446 5599111 -276594553 - MER21B LTR ERV1 -125 738 4 1120 203 57 83 chr1 5600008 5600358 -276593306 - MLT1A2 LTR MaLR -33 341 1 2110 129 3 3 chr1 5600639 5600941 -276592723 - AluSx SINE Alu -10 302 1 1922 202 57 9 chr1 5602043 5602483 -276591181 - MLT1C LTR MaLR -6 461 1 339 316 115 21 chr1 5603228 5603646 -276590018 + L1ME4a LINE L1 5462 5918 -203 283 249 32 56 chr1 5603654 5603886 -276589778 + HAL1b LINE L1 1190 1307 -41 681 199 0 0 chr1 5604264 5604440 -276589224 + (TG)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr1 5604570 5604591 -276589073 + AT_rich Low_complexity Low_complexity 1 21 0 238 216 0 20 chr1 5605066 5605117 -276588547 + (TG)n Simple_repeat Simple_repeat 1 50 0 1372 244 59 47 chr1 5606102 5606372 -276587292 + MLT1D LTR MaLR 2 267 -238 2418 132 6 19 chr1 5606372 5606737 -276586927 - THE1B LTR MaLR -4 360 1 11620 100 20 4 chr1 5606737 5608292 -276585372 - THE1B-int LTR MaLR 0 1580 1 2377 137 8 14 chr1 5608292 5608658 -276585006 - THE1B LTR MaLR 0 364 1 1372 244 59 47 chr1 5608658 5608880 -276584784 + MLT1D LTR MaLR 266 502 -3 202 143 0 24 chr1 5610067 5610109 -276583555 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1647 302 3 2 chr1 5610455 5611044 -276582620 + HERVK13 LTR ERVK 1460 2049 -6067 2350 138 24 8 chr1 5611110 5611479 -276582185 - THE1C LTR MaLR 0 375 1 2778 209 22 30 chr1 5612556 5612729 -276580935 + MER77 LTR ERV1 1 174 -489 1677 206 159 43 chr1 5612729 5613195 -276580469 - MLT2B1 LTR ERVL 0 520 1 2778 209 22 30 chr1 5613195 5613552 -276580112 + MER77 LTR ERV1 174 577 -86 2340 100 21 0 chr1 5613552 5613881 -276579783 - L1PA13 LINE L1 -15 6148 5813 2778 209 22 30 chr1 5613881 5613962 -276579702 + MER77 LTR ERV1 577 657 -6 186 263 76 82 chr1 5614159 5614330 -276579334 + L2 LINE L2 2867 3036 -236 323 300 22 0 chr1 5614747 5614837 -276578827 - MER117 DNA MER1_type 0 197 106 1946 184 26 0 chr1 5615189 5615569 -276578095 + MLT1B LTR MaLR 1 390 0 1666 169 76 10 chr1 5617786 5618150 -276575514 - MLT1B LTR MaLR -1 466 1 2364 88 3 0 chr1 5618654 5618949 -276574715 - AluSq SINE Alu -12 301 6 25 0 0 0 chr1 5618957 5618982 -276574682 + AT_rich Low_complexity Low_complexity 1 25 0 2544 196 9 30 chr1 5618983 5619509 -276574155 - MLT2B2 LTR ERVL 0 515 1 200 292 0 56 chr1 5620011 5620083 -276573581 + L2 LINE L2 3219 3286 -27 279 0 0 0 chr1 5620417 5620448 -276573216 + (TA)n Simple_repeat Simple_repeat 2 32 0 2303 228 61 32 chr1 5621929 5621995 -276571669 - L1MB7 LINE L1 0 6183 6120 1999 100 3 57 chr1 5621995 5622320 -276571344 + AluSx SINE Alu 1 309 0 2263 90 0 7 chr1 5622320 5622609 -276571055 + AluSg SINE Alu 23 309 -1 2303 228 61 32 chr1 5622609 5623279 -276570385 - L1MB7 LINE L1 -62 6121 5444 210 310 40 20 chr1 5623949 5624049 -276569615 - MIR SINE MIR -71 191 90 207 331 40 47 chr1 5625320 5625468 -276568196 + MIR SINE MIR 77 223 -39 237 65 0 0 chr1 5626008 5626039 -276567625 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 696 82 0 45 chr1 5626317 5626427 -276567237 - AluSp/q SINE Alu -5 308 204 251 212 0 15 chr1 5626804 5626870 -276566794 + CT-rich Low_complexity Low_complexity 4 68 0 339 269 65 11 chr1 5626910 5627003 -276566661 - MIR SINE MIR -151 111 14 286 316 77 31 chr1 5628149 5628345 -276565319 - L2 LINE L2 -261 3011 2807 222 338 0 15 chr1 5629634 5629702 -276563962 - MIR SINE MIR -171 91 25 275 350 78 5 chr1 5630220 5630426 -276563238 - MIR SINE MIR -12 250 30 2116 117 158 61 chr1 5631087 5631530 -276562134 - LTR19A LTR ERV1 0 486 1 592 25 37 0 chr1 5632060 5632141 -276561523 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1694 183 0 16 chr1 5632560 5632877 -276560787 - AluJo SINE Alu 0 312 1 2144 116 0 0 chr1 5633434 5633735 -276559929 - AluSx SINE Alu -11 301 1 334 250 103 17 chr1 5634757 5634873 -276558791 - MIR SINE MIR -115 147 22 1359 213 7 0 chr1 5634887 5635160 -276558504 + L1MB5 LINE L1 5637 5911 -263 2248 98 52 33 chr1 5635160 5635528 -276558136 + THE1C LTR MaLR 1 375 0 2358 135 16 21 chr1 5635616 5635993 -276557671 - THE1C LTR MaLR 0 375 1 382 282 13 39 chr1 5636028 5636184 -276557480 - L2 LINE L2 -1 3312 3161 1282 235 121 71 chr1 5636946 5637427 -276556237 + MLT1D LTR MaLR 1 505 0 2039 106 13 17 chr1 5638018 5638319 -276555345 + AluSx SINE Alu 1 300 -12 5738 62 1 0 chr1 5639530 5640240 -276553424 - L1PA3 LINE L1 -1 6154 5444 297 282 109 0 chr1 5642065 5642175 -276551489 + L2 LINE L2 3188 3309 -4 214 310 0 0 chr1 5642547 5642605 -276551059 - L2 LINE L2 -17 3296 3239 30 0 0 0 chr1 5642787 5642817 -276550847 + AT_rich Low_complexity Low_complexity 1 30 0 223 200 0 0 chr1 5644896 5644936 -276548728 + MIR SINE MIR 111 150 -112 2524 52 3 0 chr1 5645030 5645337 -276548327 - AluSx SINE Alu -4 308 1 2139 108 0 16 chr1 5646008 5646324 -276547340 + AluSx SINE Alu 1 311 -1 1433 75 5 0 chr1 5646384 5646571 -276547093 + AluSg SINE Alu 1 188 -122 212 337 153 3 chr1 5646873 5647214 -276546450 + L2 LINE L2 2583 2974 -340 1683 165 3 29 chr1 5647744 5648059 -276545605 - AluJo SINE Alu -5 307 1 217 200 0 33 chr1 5649019 5649079 -276544585 + T-rich Low_complexity Low_complexity 2 59 0 1856 202 16 0 chr1 5649330 5649697 -276543967 + L1MB2 LINE L1 5645 6017 -154 209 344 62 0 chr1 5752720 5752816 -276440848 - L2 LINE L2 -17 3255 3154 498 224 29 52 chr1 5754060 5754234 -276439430 - MER53 DNA DNA -19 170 1 180 125 0 0 chr1 5755321 5755353 -276438311 + (CA)n Simple_repeat Simple_repeat 1 32 0 312 210 17 28 chr1 5755391 5755572 -276438092 + (CA)n Simple_repeat Simple_repeat 2 180 0 207 204 0 0 chr1 5755594 5755638 -276438026 + (CA)n Simple_repeat Simple_repeat 2 45 0 229 317 0 0 chr1 5755677 5755737 -276437927 + (CA)n Simple_repeat Simple_repeat 1 60 0 194 283 0 10 chr1 5755752 5755851 -276437813 + (CA)n Simple_repeat Simple_repeat 1 98 0 455 222 0 6 chr1 5755929 5756109 -276437555 + (CA)n Simple_repeat Simple_repeat 1 179 0 342 215 0 0 chr1 5756128 5756258 -276437406 + (CA)n Simple_repeat Simple_repeat 1 130 0 182 281 53 0 chr1 5756963 5757020 -276436644 - MIR SINE MIR -159 103 44 2111 134 0 0 chr1 5759577 5759882 -276433782 - AluSx SINE Alu -7 305 1 558 242 5 0 chr1 5760867 5761307 -276432357 + (TG)n Simple_repeat Simple_repeat 1 442 0 633 226 0 0 chr1 5761319 5761788 -276431876 + (TG)n Simple_repeat Simple_repeat 1 469 0 2347 65 3 3 chr1 5763743 5764037 -276429627 - AluSx SINE Alu -18 294 1 250 273 227 18 chr1 5764804 5764914 -276428750 + L2 LINE L2 3140 3272 0 277 195 12 12 chr1 5765420 5765502 -276428162 + (TG)n Simple_repeat Simple_repeat 2 83 0 254 257 40 0 chr1 5765506 5765580 -276428084 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 327 305 17 33 chr1 5765604 5765786 -276427878 + L1MC4 LINE L1 1995 6983 -1339 210 279 49 0 chr1 5765795 5765856 -276427808 + (CATG)n Simple_repeat Simple_repeat 3 66 0 319 157 29 0 chr1 5765858 5765928 -276427736 + (TG)n Simple_repeat Simple_repeat 1 72 0 190 200 0 109 chr1 5766714 5766769 -276426895 - L2 LINE L2 -23 3249 3201 858 212 0 5 chr1 5766887 5767071 -276426593 + MER96B DNA MER1_type? 49 231 -186 614 251 64 48 chr1 5767316 5767503 -276426161 - MIR SINE MIR -15 247 58 766 255 15 25 chr1 5768014 5768218 -276425446 - MER63A DNA MER1_type -8 202 1 452 320 33 7 chr1 5768565 5768718 -276424946 + MIR3 SINE MIR 18 174 -34 2361 81 0 0 chr1 5769604 5769899 -276423765 - AluY SINE Alu -16 295 1 319 265 10 20 chr1 5769954 5770052 -276423612 - MIR SINE MIR -66 142 46 261 277 219 0 chr1 5771082 5771237 -276422427 + L2 LINE L2 2297 2485 -829 414 341 6 43 chr1 5772093 5772257 -276421407 - L2 LINE L2 -7 3306 3149 1066 223 12 56 chr1 5772261 5772602 -276421062 + L1ME2 LINE L1 5839 6164 0 312 315 70 5 chr1 5772643 5772843 -276420821 + L1MC4 LINE L1 7829 8041 -1 1296 304 171 7 chr1 5772850 5773971 -276419693 - L2 LINE L2 -203 3110 1794 183 42 0 0 chr1 5773971 5773995 -276419669 + (TC)n Simple_repeat Simple_repeat 1 24 0 684 223 0 0 chr1 5773995 5774305 -276419359 + (CA)n Simple_repeat Simple_repeat 1 310 0 1777 172 53 42 chr1 5775120 5775481 -276418183 - MLT1A1 LTR MaLR 0 365 1 2163 81 3 3 chr1 5775496 5775804 -276417860 + AluSx SINE Alu 1 308 0 388 263 51 0 chr1 5776035 5776153 -276417511 - MER117 DNA MER1_type -5 192 69 339 291 29 0 chr1 5776187 5776290 -276417374 - MIR SINE MIR -67 141 36 444 293 57 0 chr1 5776623 5776763 -276416901 - MIR SINE MIR -6 256 109 769 244 96 46 chr1 5777704 5777747 -276415917 + MLT1C LTR MaLR 83 122 -471 1999 113 0 20 chr1 5777747 5778048 -276415616 + AluSx SINE Alu 18 312 0 769 244 96 46 chr1 5778048 5778360 -276415304 + MLT1C LTR MaLR 122 587 -6 194 304 18 0 chr1 5778461 5778517 -276415147 + MIR SINE MIR 117 173 -89 661 153 8 15 chr1 5779010 5779141 -276414523 + MLT1A1 LTR MaLR 1 130 -235 3317 130 2 2 chr1 5779141 5780094 -276413570 + L1P4 LINE L1 4831 5783 -382 7574 31 1 1 chr1 5780196 5781289 -276412375 + L1PA4 LINE L1 5058 6152 -3 798 79 0 40 chr1 5781289 5781410 -276412254 + L1PA8 LINE L1 6052 6172 0 1169 175 79 21 chr1 5781411 5781702 -276411962 + MLT2D LTR ERVL 107 414 0 571 309 73 16 chr1 5781867 5782058 -276411606 - MIR SINE MIR -13 249 48 429 264 16 24 chr1 5783520 5783645 -276410019 + MIR SINE MIR 104 227 -35 853 330 142 19 chr1 5784130 5784918 -276408746 + L2 LINE L2 2054 2938 -376 799 133 24 12 chr1 5784965 5785131 -276408533 + CT-rich Low_complexity Low_complexity 4 171 0 1214 151 11 0 chr1 5785162 5785347 -276408317 - AluSg/x SINE Alu -7 305 119 636 170 38 31 chr1 5785448 5785769 -276407895 + (ATGGTG)n Simple_repeat Simple_repeat 1 323 0 * 720 175 0 22 chr1 5785760 5785943 -276407721 + (ATG)n Simple_repeat Simple_repeat 1 179 0 744 296 21 0 chr1 5785962 5786202 -276407462 - MIR SINE MIR -2 260 16 237 309 112 59 chr1 5786264 5786416 -276407248 + MER5B DNA MER1_type 17 176 -2 199 354 50 0 chr1 5787748 5787847 -276405817 - MIR SINE MIR -68 140 37 1502 219 114 6 chr1 5787907 5788071 -276405593 + MLT1B LTR MaLR 1 146 -244 222 37 0 0 chr1 5788071 5788098 -276405566 + (TC)n Simple_repeat Simple_repeat 2 28 0 1502 219 114 6 chr1 5788098 5788285 -276405379 + MLT1B LTR MaLR 146 390 0 317 315 11 28 chr1 5789035 5789213 -276404451 + CT-rich Low_complexity Low_complexity 3 177 0 349 292 0 0 chr1 5789362 5789458 -276404206 + (CA)n Simple_repeat Simple_repeat 1 96 0 270 316 72 20 chr1 5790045 5790197 -276403467 + L2 LINE L2 3079 3238 -75 200 327 0 0 chr1 5790249 5790301 -276403363 + MIR SINE MIR 81 132 -76 235 88 0 0 chr1 5793535 5793569 -276400095 - MIR SINE MIR -63 145 112 340 303 40 0 chr1 5796253 5796352 -276397312 + L2 LINE L2 3168 3270 -2 286 317 10 19 chr1 5796518 5796622 -276397042 - MIR3 SINE MIR 0 208 106 2068 103 7 3 chr1 5796693 5796993 -276396671 - AluSx SINE Alu -11 301 1 287 265 0 15 chr1 5797022 5797090 -276396574 + MIR SINE MIR 119 185 -77 2193 196 44 4 chr1 5797604 5798124 -276395540 + MER74A LTR ERVL 16 556 -2 478 250 96 6 chr1 5799435 5799591 -276394073 + MER117 DNA MER1_type 1 170 -27 205 273 36 0 chr1 5799648 5799703 -276393961 + L2 LINE L2 3243 3299 -14 1080 124 0 0 chr1 5800711 5800889 -276392775 + (TTCA)n Simple_repeat Simple_repeat 3 180 0 203 138 0 0 chr1 5800890 5800919 -276392745 + (CTCA)n Simple_repeat Simple_repeat 1 29 0 192 271 29 57 chr1 5801831 5801901 -276391763 + MIR SINE MIR 86 153 -55 496 278 139 0 chr1 5801905 5802078 -276391586 + MIR SINE MIR 31 227 -35 243 239 0 0 chr1 5802646 5802713 -276390951 + (CA)n Simple_repeat Simple_repeat 1 67 0 195 294 15 15 chr1 5804126 5804194 -276389470 + L2 LINE L2 3241 3308 -5 * 323 296 117 39 chr1 5804186 5804416 -276389248 + L2 LINE L2 3066 3313 0 448 220 8 42 chr1 5805988 5806106 -276387558 - MER117 DNA MER1_type -18 179 66 1192 103 16 0 chr1 5806243 5806428 -276387236 + MER30 DNA MER1_type 43 230 0 981 147 76 5 chr1 5806429 5806627 -276387037 + MER2 DNA MER2_type 133 344 -1 378 0 0 0 chr1 5806628 5806670 -276386994 + (TG)n Simple_repeat Simple_repeat 1 42 0 1494 161 140 9 chr1 5806671 5807020 -276386644 + L1MC4 LINE L1 6690 7084 -958 686 217 29 11 chr1 5807023 5807198 -276386466 + L1MC4 LINE L1 7238 7415 -627 * 5068 110 7 21 chr1 5807194 5807763 -276385901 + L1PA10 LINE L1 5334 5889 -279 2455 74 0 3 chr1 5807763 5808075 -276385589 + AluY SINE Alu 1 311 0 5068 110 7 21 chr1 5808075 5808351 -276385313 + L1PA10 LINE L1 5889 6167 -1 1064 234 162 13 chr1 5808386 5808780 -276384884 + L1MC4 LINE L1 7447 7899 -143 1896 177 41 66 chr1 5808966 5809406 -276384258 + MSTB1 LTR MaLR 1 429 -3 2672 93 8 3 chr1 5809605 5809958 -276383706 + THE1A LTR MaLR 1 355 0 681 236 127 0 chr1 5809963 5810120 -276383544 - MER45A DNA AcHobo 0 178 2 3825 91 0 8 chr1 5810153 5810671 -276382993 - MER75 DNA T2_type 0 514 1 943 241 57 75 chr1 5810671 5810854 -276382810 + L1ME4a LINE L1 5638 5823 -298 2162 77 0 11 chr1 5810854 5811140 -276382524 + AluY SINE Alu 1 283 -28 378 0 0 0 chr1 5811140 5811182 -276382482 + (CA)n Simple_repeat Simple_repeat 2 43 0 1630 96 0 237 chr1 5811191 5811587 -276382077 + AluSx SINE Alu 1 302 0 943 241 57 75 chr1 5811587 5811738 -276381926 + L1ME4a LINE L1 5830 5974 -147 207 0 0 0 chr1 5811738 5811761 -276381903 + (CAA)n Simple_repeat Simple_repeat 2 24 0 943 241 57 75 chr1 5811761 5811904 -276381760 + L1ME4a LINE L1 5974 6118 -3 21 0 0 0 chr1 5811951 5811972 -276381692 + AT_rich Low_complexity Low_complexity 1 21 0 292 286 26 78 chr1 5812000 5812154 -276381510 - L2 LINE L2 -3 3310 3165 235 239 15 30 chr1 5812831 5812898 -276380766 + GA-rich Low_complexity Low_complexity 2 67 0 204 40 0 0 chr1 5813757 5813782 -276379882 + (TCCA)n Simple_repeat Simple_repeat 4 28 0 554 311 75 43 chr1 5813792 5814114 -276379550 - L2 LINE L2 0 3272 2941 254 219 96 14 chr1 5814432 5814505 -276379159 + MER91C DNA MER1_type 32 110 -30 870 256 85 50 chr1 5814516 5814918 -276378746 - Charlie8 DNA MER1_type -1946 471 56 338 251 31 115 chr1 5815303 5815342 -276378322 - MER69A DNA AcHobo -2351 175 134 1547 160 7 28 chr1 5815342 5815629 -276378035 - AluJo SINE Alu -8 304 24 338 251 31 115 chr1 5815629 5815719 -276377945 - MER69A DNA AcHobo -2392 134 64 982 257 30 5 chr1 5815719 5815921 -276377743 - MER63A DNA MER1_type -3 207 1 338 251 31 115 chr1 5815921 5815981 -276377683 - MER69A DNA AcHobo -2462 64 1 315 146 0 0 chr1 5819015 5819070 -276374594 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 2290 102 0 13 chr1 5820068 5820382 -276373282 - AluSx SINE Alu -2 310 1 1403 184 26 22 chr1 5821442 5821714 -276371950 + AluJo SINE Alu 39 311 -1 370 260 24 32 chr1 5822572 5822695 -276370969 - MIR SINE MIR -34 228 107 249 83 0 0 chr1 5822796 5822832 -276370832 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 187 287 49 91 chr1 5822841 5822887 -276370777 - L2 LINE L2 -1 3312 3266 2336 90 3 7 chr1 5822887 5823197 -276370467 + AluSq SINE Alu 1 309 -4 187 287 49 91 chr1 5823197 5823293 -276370371 - L2 LINE L2 -47 3266 3176 308 287 74 9 chr1 5823352 5823460 -276370204 + MIR SINE MIR 24 138 -124 429 327 140 5 chr1 5824154 5824368 -276369296 - MIR SINE MIR -4 258 16 554 310 59 5 chr1 5824381 5824568 -276369096 + MIR SINE MIR 3 199 -63 467 59 0 15 chr1 5825148 5825216 -276368448 + (TTCA)n Simple_repeat Simple_repeat 2 68 0 252 333 0 0 chr1 5825577 5825706 -276367958 + L1ME4a LINE L1 5988 6116 -5 260 303 220 8 chr1 5826710 5826842 -276366822 + MIR SINE MIR 49 208 -54 621 170 79 6 chr1 5827883 5828048 -276365616 - MER96B DNA MER1_type? -240 177 1 207 167 0 0 chr1 5829011 5829053 -276364611 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 3961 224 39 50 chr1 5829328 5829770 -276363894 + L1MD1 LINE L1 3956 4401 -1841 1869 134 3 26 chr1 5829770 5830075 -276363589 - AluSg SINE Alu -12 298 1 3961 224 39 50 chr1 5830075 5830087 -276363577 + L1MD1 LINE L1 4401 4412 -1830 2301 86 0 19 chr1 5830087 5830400 -276363264 - AluY SINE Alu -4 307 1 3961 224 39 50 chr1 5830400 5830830 -276362834 + L1MD1 LINE L1 4412 4845 -1397 2174 110 7 3 chr1 5830830 5831131 -276362533 + AluSq SINE Alu 1 302 -11 3961 224 39 50 chr1 5831131 5832150 -276361514 + L1MD1 LINE L1 4845 5833 -409 2182 91 0 20 chr1 5832152 5832448 -276361216 + AluSg SINE Alu 5 294 -16 207 0 0 0 chr1 5832511 5832534 -276361130 + (CA)n Simple_repeat Simple_repeat 2 24 0 1007 189 41 5 chr1 5832534 5832730 -276360934 + L1MD2 LINE L1 6154 6356 -3 255 311 205 6 chr1 5836465 5836626 -276357038 - MIR SINE MIR 0 262 70 414 321 103 19 chr1 5836644 5836906 -276356758 + L1ME4a LINE L1 5614 5897 -224 263 335 44 0 chr1 5836919 5837077 -276356587 + L1ME4a LINE L1 5955 6119 -2 237 268 0 56 chr1 5837366 5837437 -276356227 - MIR3 SINE MIR -4 204 138 340 255 97 0 chr1 5838519 5838631 -276355033 - MIR SINE MIR -75 133 8 1830 195 120 24 chr1 5839876 5840024 -276353640 + MLT1C LTR MaLR 1 133 -334 372 77 0 0 chr1 5840024 5840076 -276353588 + (TG)n Simple_repeat Simple_repeat 2 53 0 2147 101 3 0 chr1 5840076 5840362 -276353302 - AluSp SINE Alu -26 287 1 1830 195 120 24 chr1 5840362 5840637 -276353027 + MLT1C LTR MaLR 132 466 -1 636 313 119 13 chr1 5840722 5841099 -276352565 + L2 LINE L2 2455 2871 -443 339 283 70 89 chr1 5841596 5841854 -276351810 + L2 LINE L2 3046 3298 -15 234 62 0 0 chr1 5841855 5841887 -276351777 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 226 336 179 9 chr1 5842561 5842784 -276350880 - MIR SINE MIR 0 262 2 307 282 18 45 chr1 5843649 5843759 -276349905 + MER5B DNA MER1_type 36 142 -36 229 248 9 9 chr1 5845250 5845359 -276348305 + CT-rich Low_complexity Low_complexity 2 110 0 406 247 11 0 chr1 5845359 5845452 -276348212 - L2 LINE L2 0 3272 3179 320 368 21 7 chr1 5845832 5845976 -276347688 + MIR SINE MIR 103 248 -14 200 158 18 0 chr1 5846804 5846861 -276346803 + (TG)n Simple_repeat Simple_repeat 1 58 0 306 359 78 51 chr1 5847943 5848199 -276345465 - L1M4 LINE L1 -2799 3347 3085 5983 33 1 2 chr1 5848314 5849108 -276344556 - L1P LINE L1 -1747 4399 3607 7309 56 12 7 chr1 5849108 5850560 -276343104 - SVA Other Other -839 1386 44 229 296 70 0 chr1 5851030 5851101 -276342563 - MIR SINE MIR -127 135 60 466 354 143 0 chr1 5851320 5851543 -276342121 - MIR SINE MIR -3 259 5 186 103 0 0 chr1 5851849 5851878 -276341786 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 339 328 173 9 chr1 5852857 5853186 -276340478 - L2 LINE L2 -1138 2176 1794 656 228 0 12 chr1 5853207 5853723 -276339941 + (CA)n Simple_repeat Simple_repeat 1 509 0 204 125 0 0 chr1 5853952 5853984 -276339680 + (AGCTG)n Simple_repeat Simple_repeat 3 34 0 182 328 17 17 chr1 5857164 5857280 -276336384 + L2 LINE L2 2991 3106 -166 193 225 0 0 chr1 5857729 5857769 -276335895 + L2 LINE L2 3151 3190 -82 204 282 70 92 chr1 5857772 5857914 -276335750 + MIR SINE MIR 50 188 -74 446 325 27 37 chr1 5859126 5859314 -276334350 - MIR SINE MIR -6 256 71 373 286 0 0 chr1 5859320 5859404 -276334260 - MIR SINE MIR -108 154 71 379 286 0 0 chr1 5859410 5859494 -276334170 - MIR SINE MIR -108 154 71 273 317 10 40 chr1 5860977 5861078 -276332586 + MIR SINE MIR 62 159 -103 288 312 52 13 chr1 5861955 5862109 -276331555 + MIR3 SINE MIR 30 189 -19 185 111 44 0 chr1 5862420 5862465 -276331199 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 219 69 0 0 chr1 5865828 5865857 -276327807 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 237 197 211 0 chr1 5866388 5866459 -276327205 - MARNA DNA Mariner -224 362 277 22 0 0 0 chr1 5869625 5869647 -276324017 + AT_rich Low_complexity Low_complexity 1 22 0 6084 114 4 10 chr1 5870220 5871550 -276322114 + L1PA15 LINE L1 4842 6165 0 1138 192 37 4 chr1 5871551 5871796 -276321868 + MLT1A1 LTR MaLR 113 365 0 337 253 118 56 chr1 5871879 5872057 -276321607 - MIR SINE MIR -53 209 21 700 177 7 7 chr1 5873036 5873315 -276320349 + (ATG)n Simple_repeat Simple_repeat 1 279 0 902 139 7 39 chr1 5873249 5873593 -276320071 + (ATGGTG)n Simple_repeat Simple_repeat 1 332 0 720 169 14 41 chr1 5873613 5873979 -276319685 + (ATGGTG)n Simple_repeat Simple_repeat 1 355 0 3813 152 126 32 chr1 5875439 5876194 -276317470 + LTR1B LTR ERV1 1 826 0 637 217 30 18 chr1 5876679 5876845 -276316819 + MER96B DNA MER1_type? 16 183 -234 423 325 100 0 chr1 5876949 5877109 -276316555 - MIR SINE MIR -79 183 8 263 326 54 16 chr1 5877659 5877788 -276315876 - L2 LINE L2 -1 3271 3138 271 293 27 0 chr1 5878102 5878177 -276315487 - MIR3 SINE MIR -31 177 101 364 280 47 0 chr1 5878287 5878394 -276315270 - MIR SINE MIR -59 149 38 1768 140 0 4 chr1 5880137 5880401 -276313263 + AluSx SINE Alu 38 300 -12 229 162 0 0 chr1 5880401 5880438 -276313226 - Alu SINE Alu -96 37 1 310 287 113 40 chr1 5880505 5880655 -276313009 + L2 LINE L2 3153 3313 0 226 261 98 33 chr1 5880855 5880947 -276312717 + MIR SINE MIR 34 131 -77 364 303 83 51 chr1 5881625 5881692 -276311972 - L2 LINE L2 -249 3064 3001 2207 108 0 0 chr1 5881692 5881980 -276311684 + AluSq SINE Alu 1 318 0 196 100 0 0 chr1 5881980 5882010 -276311654 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 364 303 83 51 chr1 5882010 5882267 -276311397 - L2 LINE L2 -312 3001 2730 204 245 0 0 chr1 5882954 5883003 -276310661 + A-rich Low_complexity Low_complexity 6 54 0 525 319 113 7 chr1 5888200 5888667 -276304997 + L2 LINE L2 2647 3158 -155 1311 166 92 0 chr1 5888667 5888938 -276304726 + MER46C DNA MER2_type 1 296 -42 745 194 27 21 chr1 5888941 5889127 -276304537 - MER20 DNA MER1_type -4 215 29 233 379 42 0 chr1 5889212 5889307 -276304357 + L2 LINE L2 3151 3249 -23 1293 202 121 57 chr1 5889309 5889765 -276303899 + MER31A LTR ERV1 1 485 0 336 333 157 0 chr1 5890347 5890500 -276303164 - L3 LINE CR1 -107 1470 1294 1180 267 124 2 chr1 5890998 5891440 -276302224 + MLT1J LTR MaLR 7 502 -9 247 368 86 31 chr1 5891943 5892106 -276301558 - MIR SINE MIR -71 191 20 546 215 90 7 chr1 5892860 5893004 -276300660 - MIR SINE MIR -30 232 77 2310 112 0 0 chr1 5894012 5894324 -276299340 + AluSx SINE Alu 1 312 0 320 288 130 14 chr1 5894332 5894478 -276299186 + MIR SINE MIR 20 182 -80 738 187 42 17 chr1 5894930 5895263 -276298401 + MSTD LTR MaLR 2 396 0 991 190 78 5 chr1 5895957 5896162 -276297502 + MER58A DNA MER1_type 1 220 -4 928 149 9 0 chr1 5896665 5896901 -276296763 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 180 336 168 9 chr1 5896913 5897026 -276296638 - L2 LINE L2 -16 3256 3126 319 212 176 0 chr1 5898040 5898125 -276295539 + MLT2D LTR ERVL 17 116 -298 26168 52 2 9 chr1 5898127 5901775 -276291889 + L1P LINE L1 1 3621 -2525 653 66 11 0 chr1 5901789 5901880 -276291784 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 216 156 16 31 chr1 5902086 5902150 -276291514 + GA-rich Low_complexity Low_complexity 4 66 0 356 301 15 15 chr1 5902213 5902346 -276291318 + GA-rich Low_complexity Low_complexity 4 136 0 242 195 55 37 chr1 5902461 5902625 -276291039 + (TTGTG)n Simple_repeat Simple_repeat 4 170 0 28 0 0 0 chr1 5903345 5903373 -276290291 + AT_rich Low_complexity Low_complexity 1 28 0 330 355 69 31 chr1 5903675 5904044 -276289620 - L1MEd LINE L1 -1205 1302 895 495 213 62 19 chr1 5904625 5904785 -276288879 - MER58 DNA MER1_type -132 209 43 2044 114 38 0 chr1 5904788 5905078 -276288586 + AluSx SINE Alu 1 301 -11 1050 82 0 0 chr1 5905080 5905214 -276288450 + AluSp/q SINE Alu 166 299 -14 789 156 12 42 chr1 5905774 5905941 -276287723 - MER3 DNA MER1_type 0 209 48 232 303 81 0 chr1 5907036 5907135 -276286529 - L2 LINE L2 -216 3056 2950 332 327 27 9 chr1 5908079 5908189 -276285475 - MIR SINE MIR -131 131 20 288 355 50 21 chr1 5908928 5909069 -276284595 - MIR SINE MIR -80 182 38 22 0 0 0 chr1 5910049 5910071 -276283593 + AT_rich Low_complexity Low_complexity 1 22 0 273 256 0 44 chr1 5910222 5910312 -276283352 + G-rich Low_complexity Low_complexity 3 88 0 672 180 6 17 chr1 5910965 5911143 -276282521 + CT-rich Low_complexity Low_complexity 3 178 0 277 368 0 11 chr1 5912255 5912350 -276281314 + MIR SINE MIR 63 156 -106 353 329 124 9 chr1 5912715 5912925 -276280739 + MIR SINE MIR 15 248 -14 2348 231 30 0 chr1 5914358 5914916 -276278748 + L1MB5 LINE L1 5587 6161 -13 339 318 32 16 chr1 5915087 5915213 -276278451 - L2 LINE L2 -1 3271 3144 205 291 55 36 chr1 5917025 5917135 -276276529 - MIR SINE MIR -70 192 81 2130 123 7 0 chr1 5917488 5917798 -276275866 - AluSx SINE Alu 0 312 1 2131 166 17 6 chr1 5918408 5918769 -276274895 + MLT1A1 LTR MaLR 1 365 0 372 274 86 8 chr1 5919303 5919420 -276274244 + MIR SINE MIR 15 140 -122 296 241 97 14 chr1 5920099 5920244 -276273420 + MER20 DNA MER1_type 6 162 -57 214 400 12 0 chr1 5920491 5920571 -276273093 - L3 LINE CR1 -25 1552 1472 24 32 0 0 chr1 5920954 5920985 -276272679 + AT_rich Low_complexity Low_complexity 1 31 0 296 376 43 12 chr1 5921216 5921378 -276272286 - MIR3 SINE MIR -15 193 27 386 340 62 14 chr1 5922294 5922438 -276271226 + L2 LINE L2 3118 3268 -4 376 316 39 32 chr1 5923911 5924066 -276269598 - L2 LINE L2 0 3272 3117 476 302 31 0 chr1 5924381 5924510 -276269154 + L2 LINE L2 3180 3312 -1 602 358 5 10 chr1 5924510 5924717 -276268947 - MIR SINE MIR -50 212 7 181 276 171 33 chr1 5925558 5925710 -276267954 + L2 LINE L2 2911 3083 -189 230 279 103 0 chr1 5927334 5927402 -276266262 - MIR3 SINE MIR -30 178 104 275 350 108 5 chr1 5928311 5928505 -276265159 - MIR SINE MIR -29 233 20 299 318 216 25 chr1 5929112 5929474 -276264190 + L2 LINE L2 2883 3313 0 1292 209 159 0 chr1 5929629 5930007 -276263657 + MLT1C LTR MaLR 2 439 -28 212 260 7 123 chr1 5931975 5932021 -276261643 + L2 LINE L2 3136 3186 -86 821 194 123 83 chr1 5932021 5932193 -276261471 + MLT1A1 LTR MaLR 1 165 -200 1970 151 6 35 chr1 5932193 5932510 -276261154 - AluJb SINE Alu -4 308 1 821 194 123 83 chr1 5932510 5932687 -276260977 + MLT1A1 LTR MaLR 165 364 -1 212 260 7 123 chr1 5932687 5932786 -276260878 + L2 LINE L2 3186 3264 -8 234 0 0 0 chr1 5932787 5932813 -276260851 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1289 216 23 20 chr1 5933413 5933719 -276259945 - L1MD1 LINE L1 -136 6106 5800 472 284 77 0 chr1 5934901 5935056 -276258608 + MIR SINE MIR 32 198 -64 419 250 0 17 chr1 5936671 5936847 -276256817 + (CAT)n Simple_repeat Simple_repeat 3 175 0 201 154 0 0 chr1 5936872 5936911 -276256753 + (CACCAT)n Simple_repeat Simple_repeat 6 44 0 569 220 0 16 chr1 5936972 5937154 -276256510 + (CAT)n Simple_repeat Simple_repeat 1 179 0 2512 99 74 8 chr1 5937183 5937576 -276256088 + MSTA LTR MaLR 9 427 -1 701 156 24 12 chr1 5937615 5937782 -276255882 + (CACCAT)n Simple_repeat Simple_repeat 4 172 0 492 233 0 0 chr1 5937785 5937931 -276255733 + (CAT)n Simple_repeat Simple_repeat 2 147 0 612 300 40 18 chr1 5937934 5938161 -276255503 - MIR SINE MIR -3 259 28 204 238 16 32 chr1 5938356 5938419 -276255245 - L2 LINE L2 -3 3269 3208 389 316 8 15 chr1 5938906 5939039 -276254625 - L2 LINE L2 -3 3310 3179 183 274 0 20 chr1 5941269 5941320 -276252344 + L2 LINE L2 3205 3254 -18 2381 88 7 0 chr1 5943768 5944073 -276249591 - AluSq SINE Alu -6 307 1 256 350 68 0 chr1 5944536 5944653 -276249011 + MIR SINE MIR 28 152 -110 507 239 88 19 chr1 5945582 5945741 -276247923 - MIR SINE MIR -29 233 64 2354 115 0 3 chr1 5945808 5946121 -276247543 + AluSq SINE Alu 1 312 -1 892 285 139 50 chr1 5946746 5947805 -276245859 - L2 LINE L2 -2 3311 2086 2316 118 3 3 chr1 5947805 5948118 -276245546 + AluSq SINE Alu 1 313 0 892 285 139 50 chr1 5948118 5948161 -276245503 - L2 LINE L2 -1227 2086 2048 1134 275 193 15 chr1 5948227 5948763 -276244901 - L2 LINE L2 -518 2796 2116 2160 134 0 10 chr1 5948763 5949068 -276244596 + AluSx SINE Alu 1 302 -10 1134 275 193 15 chr1 5949068 5949201 -276244463 - L2 LINE L2 -1198 2116 2008 43279 35 2 3 chr1 5949339 5955504 -276238160 + L1PA4 LINE L1 4 6155 0 181 222 44 0 chr1 5955547 5955592 -276238072 - L2 LINE L2 0 3272 3226 1657 81 36 5 chr1 5955705 5955926 -276237738 - AluSc SINE Alu -3 306 79 774 113 0 0 chr1 5956240 5956364 -276237300 + (CA)n Simple_repeat Simple_repeat 1 124 0 299 253 13 0 chr1 5958432 5958507 -276235157 + MIR3 SINE MIR 112 187 -21 193 370 50 0 chr1 5958920 5959020 -276234644 - L2 LINE L2 -6 3266 3162 399 224 0 0 chr1 5960595 5960702 -276232962 + (TG)n Simple_repeat Simple_repeat 2 108 0 263 258 124 0 chr1 5961489 5961578 -276232086 - MIR SINE MIR -77 185 86 1978 157 0 22 chr1 5961590 5961908 -276231756 + AluJb SINE Alu 1 311 -1 188 53 35 70 chr1 5962298 5962355 -276231309 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 240 317 67 0 chr1 5963137 5963257 -276230407 + MIR SINE MIR 121 248 -14 418 291 53 5 chr1 5963312 5963501 -276230163 + MIR SINE MIR 50 247 -15 374 327 53 68 chr1 5963683 5963895 -276229769 + L2 LINE L2 2966 3175 -97 2271 92 17 3 chr1 5963895 5964189 -276229475 - AluSq SINE Alu -13 300 3 374 327 53 68 chr1 5964189 5964257 -276229407 + L2 LINE L2 3175 3242 -30 3193 195 61 31 chr1 5965433 5966386 -276227278 + L1ME1 LINE L1 4304 5282 -864 15128 184 22 24 chr1 5966471 5967778 -276225886 + L1MA6 LINE L1 2097 3406 -4313 2299 143 18 39 chr1 5967778 5968219 -276225445 - MSTB1 LTR MaLR 0 432 1 15128 184 22 24 chr1 5968219 5969023 -276224641 + L1MA6 LINE L1 3406 4211 -3508 405 0 0 0 chr1 5969023 5969068 -276224596 + (TA)n Simple_repeat Simple_repeat 2 46 0 360 0 0 0 chr1 5969067 5969107 -276224557 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 15128 184 22 24 chr1 5969068 5970818 -276222846 + L1MA6 LINE L1 4211 5964 -1755 2466 157 19 7 chr1 5970818 5971245 -276222419 - MSTB1 LTR MaLR 0 432 1 15128 184 22 24 chr1 5971245 5972079 -276221585 + L1MA6 LINE L1 5964 6799 -920 2353 115 0 0 chr1 5972079 5972392 -276221272 + AluSq SINE Alu 1 313 0 420 37 0 0 chr1 5972396 5972450 -276221214 + (CA)n Simple_repeat Simple_repeat 1 54 0 15128 184 22 24 chr1 5972450 5973699 -276219965 + L1MA6 LINE L1 6802 7719 0 1663 143 4 50 chr1 5973727 5974007 -276219657 + AluJo SINE Alu 44 310 -2 3011 221 48 39 chr1 5974015 5974192 -276219472 + L1ME1 LINE L1 5326 5500 -666 1568 144 9 114 chr1 5974192 5974364 -276219300 - AluJo SINE Alu -13 299 111 249 33 0 0 chr1 5974364 5974394 -276219270 + (ATTG)n Simple_repeat Simple_repeat 4 33 0 1927 118 22 4 chr1 5974394 5974665 -276218999 - AluSx SINE Alu -32 280 5 1568 144 9 114 chr1 5974665 5974707 -276218957 - AluJo SINE Alu -200 112 67 2292 98 10 0 chr1 5974707 5975003 -276218661 + AluSp SINE Alu 1 299 -14 1568 144 9 114 chr1 5975003 5975120 -276218544 - AluJo SINE Alu -245 67 1 3011 221 48 39 chr1 5975120 5975769 -276217895 + L1ME1 LINE L1 5500 6160 -6 347 271 0 0 chr1 5975791 5975876 -276217788 + MIR SINE MIR 78 162 -100 270 0 0 0 chr1 5975903 5975933 -276217731 + (CA)n Simple_repeat Simple_repeat 2 31 0 2322 91 14 0 chr1 5975965 5976261 -276217403 + AluSp SINE Alu 1 300 -13 300 287 17 9 chr1 5976655 5976770 -276216894 - MIR SINE MIR -84 178 63 378 254 145 29 chr1 5979067 5979205 -276214459 - MIR SINE MIR -62 200 47 254 400 52 0 chr1 5980473 5980628 -276213036 - MIR SINE MIR -50 212 50 1728 85 0 0 chr1 5981958 5982169 -276211495 + AluY SINE Alu 86 296 -15 181 234 170 21 chr1 5983312 5983406 -276210258 + L2 LINE L2 3185 3292 -21 396 217 0 0 chr1 5983415 5983553 -276210111 + (CAT)n Simple_repeat Simple_repeat 2 139 0 250 185 19 0 chr1 5983576 5983630 -276210034 + (CACCAT)n Simple_repeat Simple_repeat 1 55 0 801 264 39 43 chr1 5983633 5983887 -276209777 - MIR SINE MIR -6 256 4 520 244 0 60 chr1 5984152 5984320 -276209344 + L2 LINE L2 3156 3313 0 401 0 20 0 chr1 5984387 5984436 -276209228 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 707 272 46 22 chr1 5984978 5985340 -276208324 + MLT1J LTR MaLR 1 431 -80 6423 13 5 0 chr1 5985340 5986123 -276207541 + L1PA3 LINE L1 5385 6171 0 707 272 46 22 chr1 5986123 5986198 -276207466 + MLT1J LTR MaLR 431 503 -8 234 213 0 0 chr1 5986293 5986340 -276207324 + MIR SINE MIR 203 249 -13 2353 103 3 0 chr1 5986665 5986966 -276206698 - AluSp SINE Alu -9 304 3 1986 194 36 2 chr1 5988485 5988934 -276204730 - L1MB5 LINE L1 0 6174 5711 728 251 22 27 chr1 5989158 5989314 -276204350 - MER58A DNA MER1_type -2197 223 67 1892 125 4 7 chr1 5989314 5989586 -276204078 - AluSx SINE Alu -4 308 38 728 251 22 27 chr1 5989586 5989652 -276204012 - MER58A DNA MER1_type -2353 67 2 356 331 106 11 chr1 5989670 5989954 -276203710 + MLT1K LTR MaLR 188 498 -90 255 294 78 10 chr1 5992362 5992464 -276201200 + MIR SINE MIR 49 157 -105 721 201 16 58 chr1 5993971 5994160 -276199504 + MER20 DNA MER1_type 39 219 0 448 332 65 14 chr1 5994388 5994605 -276199059 + MIR SINE MIR 2 229 -33 190 370 43 0 chr1 5995264 5995356 -276198308 + MIR SINE MIR 29 124 -84 292 253 152 40 chr1 5995360 5995459 -276198205 - MER20 DNA MER1_type -109 110 1 2207 95 3 11 chr1 5995701 5996021 -276197643 + AluSx SINE Alu 1 318 0 2537 81 0 0 chr1 5996050 5996360 -276197304 + AluY SINE Alu 1 310 -1 1036 262 128 19 chr1 5997426 5997849 -276195815 + MER77 LTR ERV1 122 590 -15 200 342 25 0 chr1 5998482 5998561 -276195103 - L2 LINE L2 -8 3264 3184 262 235 141 24 chr1 6001123 6001208 -276192456 - L2 LINE L2 -3 3310 3216 324 70 0 0 chr1 6002361 6002404 -276191260 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 485 121 0 48 chr1 6002733 6002816 -276190848 + AluJ/FRAM SINE Alu 222 300 -12 1025 165 43 0 chr1 6002839 6003027 -276190637 + MLT1A1 LTR MaLR 170 365 0 235 302 12 23 chr1 6003035 6003121 -276190543 + L2 LINE L2 3228 3312 -1 228 269 90 30 chr1 6003193 6003327 -276190337 + MIR3 SINE MIR 67 208 0 224 250 44 19 chr1 6004741 6004901 -276188763 + (CAACT)n Simple_repeat Simple_repeat 1 164 0 233 330 60 13 chr1 6005791 6006012 -276187652 + L2 LINE L2 2973 3270 -2 506 258 35 61 chr1 6006632 6006830 -276186834 - MIR SINE MIR -19 243 51 1891 178 102 2 chr1 6006992 6007413 -276186251 + MLT1C LTR MaLR 1 463 -4 317 265 102 7 chr1 6009702 6009849 -276183815 - MIR SINE MIR -57 205 45 490 311 78 5 chr1 6010336 6010542 -276183122 - MIR SINE MIR -41 221 1 680 270 148 33 chr1 6011286 6011830 -276181834 - L2 LINE L2 -266 3047 2421 1039 127 6 19 chr1 6011846 6012027 -276181637 - AluJb SINE Alu 0 312 134 2246 127 0 13 chr1 6012027 6012342 -276181322 - AluSx SINE Alu -1 311 1 4994 126 15 11 chr1 6012395 6012813 -276180851 + L1PA15 LINE L1 5355 5779 -386 2613 64 0 3 chr1 6012813 6013124 -276180540 + AluY SINE Alu 1 310 -1 4994 126 15 11 chr1 6013124 6013512 -276180152 + L1PA15 LINE L1 5779 6164 -1 2387 106 6 0 chr1 6013538 6013849 -276179815 + AluSq SINE Alu 1 313 0 496 305 7 0 chr1 6013849 6014003 -276179661 - L2 LINE L2 -952 2362 2208 260 244 0 61 chr1 6014079 6014161 -276179503 - MIR SINE MIR -104 158 82 255 229 9 29 chr1 6015043 6015148 -276178516 + CT-rich Low_complexity Low_complexity 6 108 0 219 69 0 0 chr1 6016510 6016539 -276177125 + (CA)n Simple_repeat Simple_repeat 1 29 0 232 288 100 75 chr1 6016600 6016760 -276176904 + L3 LINE CR1 1335 1498 -79 1309 224 101 0 chr1 6017428 6017776 -276175888 + MLT1B LTR MaLR 1 383 -7 1246 232 46 41 chr1 6019278 6019717 -276173947 + MLT1C LTR MaLR 11 451 -16 385 293 69 43 chr1 6020882 6021070 -276172594 - MIR3 SINE MIR -3 205 13 684 271 74 29 chr1 6021871 6022211 -276171453 + L1ME LINE L1 4982 5363 -801 2347 70 3 17 chr1 6022211 6022513 -276171151 + AluY SINE Alu 1 298 -13 684 271 74 29 chr1 6022513 6022772 -276170892 + L1ME LINE L1 5363 5609 -555 668 278 66 8 chr1 6022791 6023037 -276170627 + MLT1H1 LTR MaLR 1 242 -288 249 132 0 0 chr1 6023181 6023219 -276170445 + MLT1C LTR MaLR 558 595 0 568 326 25 18 chr1 6023231 6023507 -276170157 + L1ME3A LINE L1 5670 5947 -223 198 298 38 51 chr1 6024495 6024653 -276169011 + MIR3 SINE MIR 47 202 -6 380 297 8 17 chr1 6025161 6025279 -276168385 + MIR SINE MIR 106 222 -40 303 321 47 0 chr1 6026376 6026482 -276167182 + L2 LINE L2 3156 3266 -6 564 101 0 0 chr1 6026490 6026579 -276167085 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 270 153 0 0 chr1 6026666 6026725 -276166939 + GA-rich Low_complexity Low_complexity 4 62 0 1185 206 5 5 chr1 6027017 6027235 -276166429 + MER58A DNA MER1_type 7 224 0 2167 131 20 3 chr1 6027365 6027670 -276165994 + AluSx SINE Alu 1 310 -2 248 204 273 18 chr1 6027739 6027864 -276165800 + MIR3 SINE MIR 5 153 -64 270 250 15 0 chr1 6027864 6027932 -276165732 + L2 LINE L2 3016 3084 -229 590 203 8 8 chr1 6027948 6028076 -276165588 - L1MB8 LINE L1 0 6178 6051 1778 139 186 6 chr1 6028102 6028462 -276165202 + MSTA LTR MaLR 4 428 0 347 237 0 0 chr1 6028462 6028538 -276165126 - L1MB3 LINE L1 -19 6164 6089 457 306 111 5 chr1 6028544 6028760 -276164904 + L2 LINE L2 3075 3313 0 252 167 19 0 chr1 6029142 6029196 -276164468 - MLT2C2 LTR ERVL 0 520 466 285 139 28 14 chr1 6029209 6029281 -276164383 + (TA)n Simple_repeat Simple_repeat 1 73 0 1392 177 28 32 chr1 6029281 6029563 -276164101 - MLT2C2 LTR ERVL -35 429 149 982 164 6 17 chr1 6029763 6029940 -276163724 - MLT2D LTR ERVL -239 175 1 213 65 0 0 chr1 6032091 6032122 -276161542 + (C)n Simple_repeat Simple_repeat 1 31 0 180 125 0 0 chr1 6034418 6034450 -276159214 + (TG)n Simple_repeat Simple_repeat 1 32 0 332 231 194 22 chr1 6035640 6035774 -276157890 + Charlie1 DNA MER1_type 82 238 -2523 * 494 148 8 141 chr1 6035771 6035899 -276157765 + Charlie1 DNA MER1_type 2631 2741 -20 189 0 0 0 chr1 6036002 6036023 -276157641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1961 102 15 0 chr1 6036028 6036302 -276157362 - AluSq SINE Alu -35 278 1 22 35 0 0 chr1 6037886 6037915 -276155749 + AT_rich Low_complexity Low_complexity 1 29 0 659 260 78 70 chr1 6038253 6038737 -276154927 + L1MEd LINE L1 700 1179 -5131 1455 168 29 19 chr1 6038737 6039046 -276154618 - AluJb SINE Alu 0 312 1 659 260 78 70 chr1 6039046 6039520 -276154144 + L1MEd LINE L1 1179 1697 -4613 1182 254 126 36 chr1 6039553 6039829 -276153835 + L2 LINE L2 1541 1791 -1523 2291 50 40 10 chr1 6039829 6040127 -276153537 - AluY SINE Alu -4 307 1 1182 254 126 36 chr1 6040127 6040436 -276153228 + L2 LINE L2 1791 2179 -1135 2116 187 52 16 chr1 6040439 6040883 -276152781 - MLT1C LTR MaLR 0 467 8 211 284 40 0 chr1 6040883 6040957 -276152707 + L2 LINE L2 2196 2272 -1042 480 179 42 0 chr1 6041008 6041103 -276152561 + MER69 DNA AcHobo 2424 2522 -4 1986 127 0 0 chr1 6041103 6041416 -276152248 + AluSx SINE Alu 1 313 0 870 269 146 25 chr1 6041433 6042177 -276151487 + L2 LINE L2 2250 3313 0 1643 71 5 0 chr1 6042439 6042651 -276151013 - AluSg/x SINE Alu -14 296 84 733 261 159 46 chr1 6042774 6043383 -276150281 + L1MEd LINE L1 2093 2770 -3359 475 277 8 23 chr1 6043424 6043554 -276150110 - L2 LINE L2 -1 3312 3185 959 124 0 20 chr1 6043601 6043754 -276149910 + AluSg/x SINE Alu 163 312 0 505 277 8 0 chr1 6043817 6043936 -276149728 - L2 LINE L2 -239 3074 2955 382 238 54 30 chr1 6043957 6044125 -276149539 + L1MEd LINE L1 2828 2999 -3130 294 163 58 12 chr1 6044245 6044331 -276149333 + GA-rich Low_complexity Low_complexity 2 91 0 711 270 34 6 chr1 6044335 6044661 -276149003 + L1MEd LINE L1 3100 3434 -2695 313 170 0 0 chr1 6044658 6044711 -276148953 - L1ME LINE L1 -600 5566 5514 * 850 204 64 0 chr1 6044755 6044927 -276148737 + MER58A DNA MER1_type 42 224 0 1046 287 51 29 chr1 6045007 6045418 -276148246 + HERV16 LTR ERVL 422 841 -4155 1369 276 71 19 chr1 6045546 6046013 -276147651 + HERV16 LTR ERVL 1011 1501 -3495 2471 281 77 41 chr1 6046018 6046948 -276146716 + HERV16 LTR ERVL 1661 2624 -2372 1393 261 19 44 chr1 6046953 6047473 -276146191 + L1MEd LINE L1 3932 4438 -1691 360 255 51 20 chr1 6047479 6047577 -276146087 + L2 LINE L2 3199 3299 -14 186 43 0 0 chr1 6047578 6047601 -276146063 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2497 111 98 0 chr1 6047643 6048031 -276145633 - MSTA LTR MaLR -2 426 1 216 246 0 88 chr1 6048156 6048213 -276145451 + L2 LINE L2 3136 3187 -85 385 224 12 12 chr1 6048388 6048473 -276145191 - L2 LINE L2 -1 3312 3228 229 189 57 0 chr1 6049452 6049505 -276144159 - Charlie2 DNA MER1_type -27 2835 2780 645 236 118 0 chr1 6049759 6049920 -276143744 - MIR SINE MIR -21 241 62 285 304 82 86 chr1 6050386 6050629 -276143035 + L2 LINE L2 2995 3236 -36 306 305 0 0 chr1 6050743 6050825 -276142839 - MIR SINE MIR -3 259 178 1321 211 85 58 chr1 6050841 6051014 -276142650 + MLT1C LTR MaLR 11 178 -289 2302 133 5 29 chr1 6051014 6051398 -276142266 + THE1C LTR MaLR 1 375 0 1321 211 85 58 chr1 6051398 6051669 -276141995 + MLT1C LTR MaLR 178 467 0 219 345 43 9 chr1 6051704 6051820 -276141844 - MIR3 SINE MIR -85 123 4 217 369 71 20 chr1 6053020 6053218 -276140446 + L3 LINE CR1 1250 1457 -120 9292 228 98 30 chr1 6055361 6056231 -276137433 + L1ME1 LINE L1 384 1193 -4907 1906 134 0 0 chr1 6056231 6056506 -276137158 + AluSx SINE Alu 1 275 -37 1106 65 18 12 chr1 6056512 6056682 -276136982 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 9292 228 98 30 chr1 6056682 6056726 -276136938 + L1ME1 LINE L1 1197 1237 -4863 1136 231 5 0 chr1 6056726 6056947 -276136717 + MER58A DNA MER1_type 1 222 -2 9292 228 98 30 chr1 6056947 6057663 -276136001 + L1ME1 LINE L1 1237 1903 -4197 2615 35 0 0 chr1 6057663 6057974 -276135690 + AluYa5 SINE Alu 1 311 0 9292 228 98 30 chr1 6057974 6060178 -276133486 + L1ME1 LINE L1 1903 4689 -1411 1427 194 113 7 chr1 6060178 6060487 -276133177 + MER2 DNA MER2_type 3 344 0 9292 228 98 30 chr1 6060487 6061836 -276131828 + L1ME1 LINE L1 4689 5944 -156 507 304 84 49 chr1 6061896 6062989 -276130675 + L1MC/D LINE L1 4636 5802 -803 1498 214 9 24 chr1 6063019 6063355 -276130309 - L1MB4 LINE L1 -9 6171 5841 633 276 190 6 chr1 6063363 6063689 -276129975 + L2 LINE L2 2927 3312 -1 661 281 17 22 chr1 6064100 6064278 -276129386 - MIR SINE MIR -1 261 85 2279 84 0 3 chr1 6066570 6066867 -276126797 - AluSq SINE Alu -17 296 1 492 227 0 25 chr1 6067287 6067425 -276126239 + MER69A DNA AcHobo 1 135 -42 374 250 33 0 chr1 6068154 6068246 -276125418 - MIR SINE MIR -78 130 36 228 276 121 0 chr1 6068503 6068561 -276125103 + L2 LINE L2 3206 3270 -2 484 332 101 29 chr1 6069328 6069714 -276123950 + L1MEc LINE L1 42 455 -5941 1516 297 109 18 chr1 6070233 6070846 -276122818 + L2 LINE L2 1955 2623 -691 669 236 18 48 chr1 6070885 6071050 -276122614 + MIR SINE MIR 12 171 -91 1172 242 118 25 chr1 6071097 6071452 -276122212 + MLT1E LTR MaLR 206 593 0 371 315 163 0 chr1 6071452 6071630 -276122034 + L2 LINE L2 3107 3313 0 229 252 63 63 chr1 6071763 6071874 -276121790 - L2 LINE L2 -20 3293 3183 502 290 98 27 chr1 6071995 6072219 -276121445 - MIR SINE MIR -17 245 6 24 0 0 0 chr1 6075092 6075116 -276118548 + AT_rich Low_complexity Low_complexity 1 24 0 214 215 215 11 chr1 6075784 6075877 -276117787 - MIR SINE MIR -37 225 114 423 244 21 20 chr1 6076248 6076374 -276117290 + MIR SINE MIR 20 147 -61 208 200 22 0 chr1 6076530 6076575 -276117089 + (TAA)n Simple_repeat Simple_repeat 1 46 0 620 231 6 27 chr1 6077166 6077328 -276116336 - MLT1C LTR MaLR 0 603 330 1215 207 78 51 chr1 6077344 6077716 -276115948 - MLT1C LTR MaLR -80 387 6 205 133 0 0 chr1 6077760 6077790 -276115874 - MIR SINE MIR -63 145 116 2693 118 70 0 chr1 6077997 6078395 -276115269 + MSTA LTR MaLR 1 426 -2 500 324 88 6 chr1 6079056 6079226 -276114438 + MIR SINE MIR 17 200 -62 1367 179 135 39 chr1 6079231 6079638 -276114026 + MLT1J2 LTR MaLR 5 450 0 411 244 22 0 chr1 6080395 6080485 -276113179 - MIR SINE MIR -114 148 57 250 337 47 0 chr1 6081130 6081216 -276112448 + L2 LINE L2 3153 3242 -30 189 306 53 0 chr1 6082448 6082567 -276111097 - L2 LINE L2 -289 3024 2893 2286 92 0 0 chr1 6082762 6083082 -276110582 + AluSg SINE Alu 3 322 0 334 0 0 0 chr1 6083045 6083135 -276110529 + (TAA)n Simple_repeat Simple_repeat 1 90 0 189 342 67 58 chr1 6083447 6083894 -276109770 - L2 LINE L2 -714 2600 2150 452 259 17 0 chr1 6084198 6084314 -276109350 - L1ME LINE L1 -337 5784 5667 272 318 62 34 chr1 6084637 6084816 -276108848 - L2 LINE L2 -1235 2079 1896 203 302 32 0 chr1 6085177 6085240 -276108424 + MIR3 SINE MIR 121 185 -23 411 21 0 0 chr1 6085414 6085462 -276108202 + (CA)n Simple_repeat Simple_repeat 1 48 0 351 307 126 36 chr1 6088142 6088562 -276105102 + L2 LINE L2 2855 3312 -1 326 206 93 10 chr1 6088636 6088733 -276104931 + MIR SINE MIR 36 140 -122 289 310 28 35 chr1 6089072 6089214 -276104450 + L1ME LINE L1 5523 5663 -458 192 154 0 26 chr1 6089230 6089269 -276104395 + L2 LINE L2 3266 3303 -10 226 315 43 0 chr1 6089289 6089381 -276104283 + L1ME LINE L1 5688 5783 -338 324 0 0 0 chr1 6089769 6089805 -276103859 + (CA)n Simple_repeat Simple_repeat 2 37 0 8452 228 54 32 chr1 6089903 6090655 -276103009 - L1MCa LINE L1 -1364 4851 4117 2258 106 0 7 chr1 6090655 6090957 -276102707 + AluSc SINE Alu 3 302 -7 234 0 0 0 chr1 6090957 6090983 -276102681 + (TA)n Simple_repeat Simple_repeat 2 27 0 8452 228 54 32 chr1 6090983 6092086 -276101578 - L1MCa LINE L1 -2098 4117 3039 2303 111 0 16 chr1 6092086 6092402 -276101262 - AluSx SINE Alu -1 311 1 8452 228 54 32 chr1 6092402 6093513 -276100151 - L1MCa LINE L1 -3176 3039 1841 4167 177 62 17 chr1 6093500 6094374 -276099290 - L1MB7 LINE L1 -1 6183 5271 * 3200 199 11 48 chr1 6094388 6095188 -276098476 - L1MB7 LINE L1 -1055 5091 4321 1015 241 113 3 chr1 6095186 6095559 -276098105 - L1MB7 LINE L1 -2521 3625 3212 * 441 0 0 0 chr1 6095647 6095696 -276097968 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 412 242 15 0 chr1 6095698 6095830 -276097834 - L1MB7 LINE L1 -2892 3254 3121 1275 239 28 63 chr1 6095838 6096235 -276097429 - MLT1B LTR MaLR -7 383 1 333 232 71 0 chr1 6096249 6096361 -276097303 - L1MB7 LINE L1 -3036 3110 2991 497 219 6 84 chr1 6096366 6096439 -276097225 - L1MCa LINE L1 -4533 1863 1786 591 260 0 0 chr1 6096439 6096562 -276097102 - FLAM_A SINE Alu -10 123 1 497 219 6 84 chr1 6096562 6096666 -276096998 - L1MCa LINE L1 -4610 1786 1700 2407 95 0 3 chr1 6096666 6096970 -276096694 + AluSq SINE Alu 1 303 -10 462 204 0 0 chr1 6096972 6097070 -276096594 + (TATG)n Simple_repeat Simple_repeat 3 100 0 733 266 139 33 chr1 6097096 6097678 -276095986 - L1MCa LINE L1 -4656 1561 876 2188 243 52 19 chr1 6097678 6098249 -276095415 + MLT1E LTR MaLR 1 590 -3 1009 312 46 15 chr1 6098258 6098803 -276094861 - L1MCa LINE L1 -5331 1065 504 804 288 58 53 chr1 6098827 6099313 -276094351 - L1MCa LINE L1 -5866 530 43 395 301 66 0 chr1 6100662 6100798 -276092866 + L2 LINE L2 3169 3313 0 855 163 141 105 chr1 6101478 6101648 -276092016 - MER33 DNA MER1_type -2261 324 137 2178 123 0 23 chr1 6101648 6101957 -276091707 + AluSx SINE Alu 1 302 -10 855 163 141 105 chr1 6101957 6102099 -276091565 - MER33 DNA MER1_type -2448 137 1 407 183 19 10 chr1 6102974 6103078 -276090586 + MER5A DNA MER1_type 11 115 -74 2311 89 0 0 chr1 6104691 6104982 -276088682 - AluSq SINE Alu -22 291 1 1181 163 20 0 chr1 6107051 6107247 -276086417 + MER58A DNA MER1_type 1 200 -24 278 276 26 60 chr1 6107275 6107391 -276086273 - L2 LINE L2 -1 3312 3201 194 351 106 61 chr1 6107391 6107684 -276085980 + L3b LINE CR1 1183 1488 -95 367 285 181 0 chr1 6107740 6107884 -276085780 - MER5A DNA MER1_type -6 183 14 551 187 179 0 chr1 6109451 6109585 -276084079 - MER53 DNA DNA 0 189 32 222 232 36 0 chr1 6109950 6110006 -276083658 + MIR SINE MIR 136 193 -69 1108 197 4 56 chr1 6110131 6110380 -276083284 + MLT1A1 LTR MaLR 10 245 -120 906 170 13 0 chr1 6110449 6110602 -276083062 + MLT1A1 LTR MaLR 211 365 0 2535 52 7 3 chr1 6110677 6110984 -276082680 - AluY SINE Alu -3 308 1 22 35 0 0 chr1 6111025 6111054 -276082610 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr1 6111927 6111962 -276081702 + AT_rich Low_complexity Low_complexity 1 35 0 1914 90 0 11 chr1 6111962 6112230 -276081434 - L1PA7 LINE L1 -3 6151 5887 546 262 37 21 chr1 6113493 6113680 -276079984 + MIR SINE MIR 11 200 -62 459 269 200 28 chr1 6114907 6115339 -276078325 + L1ME2 LINE L1 5367 5885 -279 258 136 0 0 chr1 6115364 6115408 -276078256 + (CA)n Simple_repeat Simple_repeat 1 44 0 205 281 123 18 chr1 6115563 6115677 -276077987 + L2 LINE L2 3181 3306 -7 1863 112 34 4 chr1 6120323 6120591 -276073073 + AluSq SINE Alu 30 305 -8 256 159 0 0 chr1 6120976 6121020 -276072644 - MIR SINE MIR -78 184 141 639 254 25 99 chr1 6121151 6121505 -276072159 + LTR16C LTR ERVL 163 490 -1 21 0 0 0 chr1 6121913 6121934 -276071730 + AT_rich Low_complexity Low_complexity 1 21 0 221 30 61 0 chr1 6122001 6122034 -276071630 + (TATG)n Simple_repeat Simple_repeat 4 38 0 238 160 0 20 chr1 6122036 6122086 -276071578 + LTR66 LTR ERVL 394 442 -168 4083 89 6 18 chr1 6122144 6122356 -276071308 + L1P LINE L1 4380 4593 -1553 7777 29 0 0 chr1 6122356 6123450 -276070214 - L1PA4 LINE L1 0 6155 5063 4083 89 6 18 chr1 6123450 6123939 -276069725 + L1PA4 LINE L1 4593 5058 -1088 357 330 40 60 chr1 6123929 6124270 -276069394 + L1M4 LINE L1 4564 4891 -1255 * 2430 81 13 0 chr1 6124270 6124451 -276069213 - AluY SINE Alu 0 311 123 351 0 0 0 chr1 6124451 6124490 -276069174 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2430 81 13 0 chr1 6124490 6124615 -276069049 - AluY SINE Alu -188 123 1 357 330 40 60 chr1 6124615 6124843 -276068821 + L1M4 LINE L1 4891 5122 -1024 5556 181 55 32 chr1 6124881 6126423 -276067241 - L1M4 LINE L1 -590 5588 4020 1810 150 56 7 chr1 6126456 6126743 -276066921 + AluSx SINE Alu 1 301 -11 2871 197 24 100 chr1 6126743 6127179 -276066485 + L1MC5 LINE L1 6859 7327 -634 2189 127 61 58 chr1 6127179 6127574 -276066090 + MSTD LTR MaLR 1 396 0 2871 197 24 100 chr1 6127574 6128188 -276065476 + L1MC5 LINE L1 7327 7829 -132 188 321 46 30 chr1 6128263 6128365 -276065299 + L2 LINE L2 3136 3242 -30 2222 115 3 0 chr1 6128365 6128660 -276065004 - AluSx SINE Alu -16 296 1 188 321 46 30 chr1 6128660 6128688 -276064976 + L2 LINE L2 3242 3268 -4 550 251 84 11 chr1 6128794 6128985 -276064679 - MIR SINE MIR -44 218 14 267 244 0 26 chr1 6129121 6129199 -276064465 + L1MC5 LINE L1 7840 7915 -46 285 290 30 60 chr1 6129220 6129320 -276064344 + MIR SINE MIR 20 116 -146 464 303 27 11 chr1 6130536 6130724 -276062940 - MIR SINE MIR -12 250 60 1984 130 7 7 chr1 6131618 6131917 -276061747 - AluSx SINE Alu -13 299 1 187 219 0 96 chr1 6131944 6132017 -276061647 - MIR SINE MIR -35 227 162 2178 131 0 0 chr1 6132175 6132473 -276061191 + AluSx SINE Alu 1 298 -14 222 328 168 42 chr1 6132688 6132807 -276060857 - L2 LINE L2 -4 3309 3176 253 289 58 19 chr1 6133391 6133495 -276060169 - L2 LINE L2 -232 3040 2933 * 291 273 106 15 chr1 6133491 6133623 -276060041 - L2 LINE L2 -491 2823 2680 383 207 97 48 chr1 6134606 6134751 -276058913 - L2 LINE L2 -10 3303 3152 194 228 152 33 chr1 6135404 6135496 -276058168 - MIR SINE MIR -71 191 89 2011 121 7 17 chr1 6135589 6135887 -276057777 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr1 6135888 6135911 -276057753 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 216 0 0 0 chr1 6135910 6135934 -276057730 + (CA)n Simple_repeat Simple_repeat 1 24 0 194 191 21 0 chr1 6137602 6137649 -276056015 + CT-rich Low_complexity Low_complexity 3 50 0 477 188 0 43 chr1 6137653 6137839 -276055825 + C-rich Low_complexity Low_complexity 3 180 0 450 64 0 64 chr1 6138863 6138941 -276054723 - Alu SINE Alu -236 73 1 2158 106 0 6 chr1 6139633 6139944 -276053720 + AluSp SINE Alu 1 309 -4 2331 75 0 3 chr1 6140129 6140435 -276053229 + AluY SINE Alu 1 305 -6 324 259 101 84 chr1 6140456 6140803 -276052861 + L1ME4a LINE L1 5768 6120 -1 2212 82 3 3 chr1 6141878 6142170 -276051494 + AluY SINE Alu 1 292 -19 208 167 19 37 chr1 6143754 6143808 -276049856 + L2 LINE L2 3026 3078 -194 402 187 0 0 chr1 6143853 6143944 -276049720 + (CA)n Simple_repeat Simple_repeat 1 91 0 202 289 228 35 chr1 6143954 6144068 -276049596 + L2 LINE L2 3136 3271 -1 261 57 0 0 chr1 6144080 6144115 -276049549 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 253 330 136 11 chr1 6144308 6144484 -276049180 - MIR SINE MIR -32 230 33 372 43 0 0 chr1 6145312 6145358 -276048306 + (TG)n Simple_repeat Simple_repeat 1 46 0 329 314 107 6 chr1 6145459 6145618 -276048046 - MIR SINE MIR -66 196 22 247 299 26 17 chr1 6145717 6145834 -276047830 + MER103 DNA DNA 1 118 -48 182 37 37 0 chr1 6145955 6145982 -276047682 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 183 296 19 0 chr1 6147024 6147078 -276046586 - L2 LINE L2 0 3272 3218 1756 182 34 58 chr1 6147160 6147373 -276046291 - MLT1A2 LTR MaLR -2 372 170 860 148 0 15 chr1 6147373 6147508 -276046156 - FLAM_C SINE Alu 0 133 1 1756 182 34 58 chr1 6147508 6147673 -276045991 - MLT1A2 LTR MaLR -204 170 3 270 0 0 0 chr1 6147689 6147719 -276045945 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 133 6 12 chr1 6147737 6147902 -276045762 - U1 snRNA snRNA -1 164 1 625 313 72 23 chr1 6149747 6149852 -276043812 + L1MD1 LINE L1 2147 2245 -3901 2419 115 33 8 chr1 6149852 6150218 -276043446 - THE1C LTR MaLR 0 375 1 625 313 72 23 chr1 6150218 6150416 -276043248 + L1MD1 LINE L1 2245 2465 -3681 1512 167 31 0 chr1 6150459 6150717 -276042947 + AluSx SINE Alu 1 266 -46 269 118 20 0 chr1 6150723 6150774 -276042890 + GA-rich Low_complexity Low_complexity 1 52 0 2250 133 123 5 chr1 6150920 6151303 -276042361 + MSTA LTR MaLR 1 428 0 344 299 58 7 chr1 6151356 6151493 -276042171 + L1MD1 LINE L1 2680 2823 -3323 486 220 112 100 chr1 6151509 6151573 -276042091 + L1MD1 LINE L1 2903 2965 -3181 2217 101 0 0 chr1 6151573 6151871 -276041793 + AluSx SINE Alu 6 303 -9 486 220 112 100 chr1 6151871 6152056 -276041608 + L1MD1 LINE L1 2965 3155 -2991 5277 192 35 36 chr1 6152178 6152596 -276041068 + L1MD1 LINE L1 4735 5152 -1090 2079 131 0 0 chr1 6152596 6152901 -276040763 + AluY SINE Alu 1 305 -6 5277 192 35 36 chr1 6152901 6152914 -276040750 + L1MD1 LINE L1 5152 5164 -1078 6318 35 0 0 chr1 6152914 6153653 -276040011 + L1PA4 LINE L1 5416 6154 -1 5277 192 35 36 chr1 6153653 6154737 -276038927 + L1MD1 LINE L1 5164 6242 0 2283 220 106 82 chr1 6154725 6155678 -276037986 + L1MC4a LINE L1 5870 6845 -963 * 1271 237 12 36 chr1 6155677 6156010 -276037654 + L1ME2 LINE L1 5821 6145 -19 * 372 317 32 68 chr1 6156058 6156279 -276037385 + L1MC4 LINE L1 7829 8041 -1 4398 191 48 66 chr1 6156288 6157450 -276036214 + L1MC4 LINE L1 6914 7995 0 186 187 55 143 chr1 6158746 6158837 -276034827 - L2 LINE L2 -91 3222 3140 203 268 18 0 chr1 6158957 6159013 -276034651 + (CAAA)n Simple_repeat Simple_repeat 1 57 0 275 273 50 72 chr1 6159978 6160117 -276033547 + L2 LINE L2 3127 3262 -10 349 292 42 14 chr1 6160437 6160581 -276033083 + L1ME2 LINE L1 5443 5590 -574 500 234 45 7 chr1 6160584 6160738 -276032926 + L1ME2 LINE L1 5727 5886 -284 1023 281 93 24 chr1 6160816 6161578 -276032086 + L1M4 LINE L1 4369 5183 -963 * 11125 208 45 29 chr1 6161572 6161859 -276031805 + L1MB7 LINE L1 2237 2518 -3666 1826 131 18 0 chr1 6161859 6162133 -276031531 + AluSq SINE Alu 1 279 -34 2365 77 3 3 chr1 6162133 6162444 -276031220 + AluY SINE Alu 1 311 0 11125 208 45 29 chr1 6162444 6162467 -276031197 + L1MB7 LINE L1 2518 2539 -3645 237 65 0 0 chr1 6162467 6162498 -276031166 + (TAA)n Simple_repeat Simple_repeat 2 32 0 11125 208 45 29 chr1 6162498 6163124 -276030540 + L1MB7 LINE L1 2539 3154 -3030 2402 56 0 28 chr1 6163124 6163444 -276030220 + AluY SINE Alu 1 311 0 11125 208 45 29 chr1 6163444 6166386 -276027278 + L1MB7 LINE L1 3154 6183 -1 2673 168 61 99 chr1 6166391 6167225 -276026439 + L1MC4 LINE L1 7241 8042 0 244 174 0 212 chr1 6167235 6167367 -276026297 + L1ME2 LINE L1 5894 5997 -167 421 300 43 43 chr1 6168124 6168354 -276025310 - L2 LINE L2 -1 3312 3083 397 298 55 38 chr1 6168478 6168713 -276024951 - L2 LINE L2 -257 3056 2818 300 268 115 38 chr1 6169425 6169582 -276024082 + MIR SINE MIR 47 215 -47 450 0 0 0 chr1 6169583 6169633 -276024031 + (TG)n Simple_repeat Simple_repeat 1 50 0 1675 136 213 28 chr1 6170866 6171227 -276022437 - MSTA LTR MaLR 0 428 1 2128 105 7 0 chr1 6171231 6171525 -276022139 - AluSx SINE Alu -16 296 1 428 325 54 30 chr1 6171757 6172052 -276021612 - MLT1I LTR MaLR -66 343 42 23 33 0 0 chr1 6172839 6172869 -276020795 + AT_rich Low_complexity Low_complexity 1 30 0 2127 91 3 7 chr1 6173895 6174193 -276019471 - AluSx SINE Alu -15 297 1 324 289 132 0 chr1 6174454 6174568 -276019096 + MIR SINE MIR 47 175 -87 296 218 158 45 chr1 6175248 6175381 -276018283 - MIR3 SINE MIR -28 180 33 479 264 104 12 chr1 6176332 6176495 -276017169 + MIR SINE MIR 70 247 -15 235 258 10 31 chr1 6176831 6176928 -276016736 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 6185 98 10 9 chr1 6176972 6177866 -276015798 - L1PB1 LINE L1 -1 6150 5256 525 245 31 33 chr1 6177889 6178114 -276015550 - L1MC4a LINE L1 -224 5897 5670 3733 183 24 6 chr1 6178241 6178964 -276014700 + L1MB3 LINE L1 5441 6176 -7 2122 111 54 40 chr1 6178997 6179367 -276014297 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr1 6179639 6179669 -276013995 + AT_rich Low_complexity Low_complexity 1 30 0 234 207 103 0 chr1 6179970 6180028 -276013636 - MER5C DNA MER1_type -234 90 27 211 192 77 19 chr1 6180498 6180550 -276013114 + L2 LINE L2 3259 3313 0 262 230 81 14 chr1 6180647 6180721 -276012943 - MIR SINE MIR -107 101 23 220 271 84 19 chr1 6180835 6180942 -276012722 - MIR SINE MIR -6 256 143 2386 167 119 101 chr1 6180944 6181723 -276011941 - L1MD3 LINE L1 0 8042 7262 2462 231 85 37 chr1 6181781 6182734 -276010930 - L1MC4a LINE L1 -885 6923 5925 3827 95 39 0 chr1 6182742 6183308 -276010356 - L1MA2 LINE L1 0 6304 5717 326 264 181 19 chr1 6183374 6183529 -276010135 - L1ME1 LINE L1 -5 6161 5982 2193 232 83 36 chr1 6183532 6183862 -276009802 - L1MC4a LINE L1 -743 5403 5500 2067 174 76 2 chr1 6183862 6184259 -276009405 + MSTB LTR MaLR 1 426 0 2193 232 83 36 chr1 6184259 6184745 -276008919 - L1MC4a LINE L1 -645 5501 5039 1029 184 192 16 chr1 6184748 6185003 -276008661 - AluY SINE Alu -11 300 1 2551 304 87 25 chr1 6185004 6186450 -276007214 - L1MC4a LINE L1 -1102 5044 3690 1700 177 20 0 chr1 6186450 6186750 -276006914 + AluJb SINE Alu 1 306 -6 2551 304 87 25 chr1 6186750 6186891 -276006773 - L1MC4a LINE L1 -2456 3690 3559 2027 108 31 0 chr1 6186891 6187177 -276006487 - AluSq SINE Alu -18 295 1 2551 304 87 25 chr1 6187177 6188047 -276005617 - L1MC4a LINE L1 -2587 3559 2432 657 222 13 20 chr1 6190283 6190436 -276003228 + MLT1J2 LTR MaLR 36 187 -263 261 83 0 0 chr1 6192182 6192218 -276001446 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 6193545 6193568 -276000096 + AT_rich Low_complexity Low_complexity 1 23 0 1982 129 3 3 chr1 6193574 6193868 -275999796 + AluSp SINE Alu 1 294 -19 2118 105 10 0 chr1 6194812 6195108 -275998556 + AluSq SINE Alu 1 299 -14 2089 201 23 12 chr1 6195227 6195659 -275998005 + L1MB5 LINE L1 5732 6168 -6 217 272 99 25 chr1 6195739 6195820 -275997844 - L2 LINE L2 -5 3308 3222 213 160 67 143 chr1 6195827 6195946 -275997718 - L2 LINE L2 -237 3035 2926 1642 250 117 101 chr1 6196170 6196518 -275997146 + L1MB8 LINE L1 2507 2848 -3316 3543 60 2 0 chr1 6196518 6196964 -275996700 + L1PA8 LINE L1 5726 6172 0 1642 250 117 101 chr1 6196964 6197435 -275996229 + L1MB8 LINE L1 2848 3310 -2854 1677 131 16 74 chr1 6197435 6197747 -275995917 + AluSx SINE Alu 1 294 -18 1642 250 117 101 chr1 6197747 6198559 -275995105 + L1MB8 LINE L1 3310 4108 -2056 2073 109 0 3 chr1 6198559 6198867 -275994797 + AluSx SINE Alu 2 308 0 1642 250 117 101 chr1 6198867 6199226 -275994438 + L1MB8 LINE L1 4108 4460 -1704 1705 152 46 7 chr1 6199226 6199498 -275994166 + AluJo SINE Alu 1 286 -26 246 62 0 0 chr1 6199498 6199530 -275994134 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1642 250 117 101 chr1 6199540 6200153 -275993511 + L1MB8 LINE L1 4460 5161 -1003 2125 110 0 10 chr1 6200153 6200453 -275993211 + AluSx SINE Alu 3 299 -13 1642 250 117 101 chr1 6200453 6200730 -275992934 + L1MB8 LINE L1 5161 5432 -732 292 301 77 42 chr1 6200738 6200881 -275992783 + L1M1 LINE L1 5500 5647 -658 2333 72 0 0 chr1 6200896 6201188 -275992476 + AluY SINE Alu 1 292 -19 2117 122 0 0 chr1 6201530 6201834 -275991830 + AluSx SINE Alu 1 304 -8 325 302 71 39 chr1 6203233 6203415 -275990249 - L2 LINE L2 -2 3311 3124 730 331 131 21 chr1 6203426 6204199 -275989465 + L2 LINE L2 187 1044 -2270 200 234 94 0 chr1 6204240 6204304 -275989360 + L2 LINE L2 2627 2696 -618 2951 210 19 26 chr1 6204335 6204960 -275988704 + L1MB8 LINE L1 5538 6158 -20 640 316 73 29 chr1 6204970 6205495 -275988169 + L2 LINE L2 2724 3284 -29 2212 130 41 36 chr1 6205495 6205857 -275987807 - THE1B LTR MaLR 0 364 1 640 316 73 29 chr1 6205857 6205888 -275987776 + L2 LINE L2 3284 3312 -1 632 333 134 19 chr1 6205894 6206880 -275986784 - L2 LINE L2 -216 3056 1895 1826 129 42 11 chr1 6207011 6207297 -275986367 - AluSq SINE Alu -18 295 1 210 211 0 0 chr1 6207309 6207347 -275986317 - MIR SINE MIR -14 248 211 1726 159 13 29 chr1 6207413 6207728 -275985936 + AluJo SINE Alu 1 310 -2 189 298 0 0 chr1 6208338 6208385 -275985279 - L3 LINE CR1 -1161 416 370 332 223 25 122 chr1 6208489 6208686 -275984978 - L1MC4 LINE L1 -1 8041 7864 2626 232 32 41 chr1 6208747 6209085 -275984579 - L1ME2 LINE L1 -10 6154 5814 2454 53 0 0 chr1 6209085 6209384 -275984280 - AluY SINE Alu -12 299 1 2626 232 32 41 chr1 6209384 6209795 -275983869 - L1ME2 LINE L1 -350 5814 5412 2362 74 0 6 chr1 6209888 6210200 -275983464 - AluY SINE Alu -1 310 1 393 338 17 79 chr1 6210758 6210964 -275982700 + L2 LINE L2 3000 3184 -88 1724 111 12 80 chr1 6210964 6211288 -275982376 - AluSq SINE Alu -8 305 4 393 338 17 79 chr1 6211288 6211371 -275982293 + L2 LINE L2 3184 3271 -1 1191 151 10 0 chr1 6211539 6211731 -275981933 + AluJb SINE Alu 9 202 -110 180 345 54 24 chr1 6213211 6213379 -275980285 - MIR3 SINE MIR -32 176 4 874 219 80 0 chr1 6216600 6216787 -275976877 + MER20 DNA MER1_type 1 202 -17 234 89 36 18 chr1 6218883 6218939 -275974725 + (TG)n Simple_repeat Simple_repeat 1 57 0 397 199 29 14 chr1 6218983 6219260 -275974404 + (TG)n Simple_repeat Simple_repeat 1 281 0 417 204 36 0 chr1 6219296 6219463 -275974201 + (TG)n Simple_repeat Simple_repeat 1 173 0 390 196 32 6 chr1 6219507 6219665 -275973999 + (TG)n Simple_repeat Simple_repeat 1 162 0 290 219 22 17 chr1 6219681 6219822 -275973842 + (TG)n Simple_repeat Simple_repeat 1 145 -34 2354 73 0 13 chr1 6219822 6220123 -275973541 - AluY SINE Alu -14 297 1 290 219 22 17 chr1 6220123 6220159 -275973505 + (TG)n Simple_repeat Simple_repeat 145 179 0 497 236 16 39 chr1 6220182 6220364 -275973300 + (TG)n Simple_repeat Simple_repeat 1 178 0 284 219 38 6 chr1 6220380 6220540 -275973124 + (TG)n Simple_repeat Simple_repeat 1 165 0 261 283 0 0 chr1 6221183 6221243 -275972421 + MIR SINE MIR 203 262 0 291 327 30 0 chr1 6221271 6221372 -275972292 - MIR SINE MIR -112 150 47 253 275 117 25 chr1 6222272 6222392 -275971272 + MIR SINE MIR 61 191 -71 1592 188 35 48 chr1 6222767 6222960 -275970704 + MLT1B LTR MaLR 7 194 -196 390 108 0 0 chr1 6222960 6223025 -275970639 + (CA)n Simple_repeat Simple_repeat 1 65 0 1592 188 35 48 chr1 6223025 6223204 -275970460 + MLT1B LTR MaLR 194 374 -16 2211 147 70 29 chr1 6224385 6224800 -275968864 - MSTB1 LTR MaLR 0 432 1 302 304 32 16 chr1 6225284 6225409 -275968255 + MIR3 SINE MIR 61 187 -21 218 262 0 0 chr1 6225549 6225591 -275968073 - MIR SINE MIR 0 262 221 184 326 0 0 chr1 6225559 6225605 -275968059 - L2 LINE L2 -16 3256 3211 * 24 0 0 0 chr1 6226501 6226525 -275967139 + AT_rich Low_complexity Low_complexity 1 24 0 692 242 86 90 chr1 6227048 6227304 -275966360 + MIR SINE MIR 3 257 -5 208 115 51 13 chr1 6227882 6227960 -275965704 + (TA)n Simple_repeat Simple_repeat 2 82 0 349 266 121 62 chr1 6227965 6228221 -275965443 + L1MC5 LINE L1 7572 7842 -119 208 135 0 0 chr1 6228223 6228260 -275965404 + (TA)n Simple_repeat Simple_repeat 2 38 0 2027 128 0 0 chr1 6228260 6228548 -275965116 - AluSx SINE Alu -23 289 2 551 323 138 14 chr1 6228952 6228970 -275964694 - L2 LINE L2 -4 3309 3295 1922 140 0 19 chr1 6228970 6229285 -275964379 + AluJo SINE Alu 1 309 -3 551 323 138 14 chr1 6229285 6229828 -275963836 - L2 LINE L2 -18 3295 1153 2847 286 149 18 chr1 6229957 6231320 -275962344 - L2 LINE L2 -685 2629 1089 352 228 22 0 chr1 6231324 6231416 -275962248 + MLT1J1 LTR MaLR 345 438 -8 947 263 13 52 chr1 6231429 6231737 -275961927 - L2 LINE L2 -2591 723 428 2095 141 10 10 chr1 6231737 6231844 -275961820 - L1P4 LINE L1 -573 5593 5488 2348 115 0 3 chr1 6231844 6232157 -275961507 - AluSq SINE Alu -1 312 1 2095 141 10 10 chr1 6232157 6232461 -275961203 - L1P4 LINE L1 -678 5488 5183 550 194 24 11 chr1 6232438 6232576 -275961088 - L1PA16 LINE L1 -445 5721 5623 * 2622 129 13 22 chr1 6232584 6232654 -275961010 + L1PA16 LINE L1 5711 5780 -386 1773 158 46 23 chr1 6232654 6232772 -275960892 + AluJb SINE Alu 1 115 -197 189 0 0 0 chr1 6232772 6232793 -275960871 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1773 158 46 23 chr1 6232793 6232978 -275960686 + AluJb SINE Alu 115 311 -1 2622 129 13 22 chr1 6232978 6233356 -275960308 + L1PA16 LINE L1 5780 6155 -11 338 250 34 11 chr1 6233433 6233521 -275960143 - L2 LINE L2 -2877 437 348 448 222 98 39 chr1 6233566 6233719 -275959945 + L1ME1 LINE L1 19 180 -6216 * 2033 262 58 9 chr1 6233715 6234462 -275959202 + L1ME1 LINE L1 3248 4030 -2185 529 269 8 0 chr1 6234465 6234599 -275959065 + L1MD3 LINE L1 7797 7931 -64 528 188 0 0 chr1 6234601 6234697 -275958967 - AluJ/FLAM SINE Alu -215 97 2 1394 142 0 10 chr1 6234771 6234968 -275958696 + AluJo SINE Alu 85 279 -33 2432 236 34 73 chr1 6234996 6235179 -275958485 + L1ME1 LINE L1 4606 4795 -1440 285 29 0 0 chr1 6235179 6235213 -275958451 + (TG)n Simple_repeat Simple_repeat 2 35 0 2108 91 18 0 chr1 6235214 6235488 -275958176 - AluSx SINE Alu -33 279 1 2432 236 34 73 chr1 6235488 6236010 -275957654 + L1ME1 LINE L1 4795 5336 -899 2547 76 0 0 chr1 6236010 6236311 -275957353 + AluSc SINE Alu 1 301 -8 2432 236 34 73 chr1 6236311 6237023 -275956641 + L1ME1 LINE L1 5336 5944 -291 2097 131 0 7 chr1 6237023 6237306 -275956358 + AluSx SINE Alu 1 283 -29 324 0 0 0 chr1 6237306 6237342 -275956322 + (CA)n Simple_repeat Simple_repeat 1 36 0 2432 236 34 73 chr1 6237348 6237626 -275956038 + L1ME1 LINE L1 5944 6231 -4 307 228 0 87 chr1 6237642 6237734 -275955930 - MIR SINE MIR -101 161 78 208 250 190 50 chr1 6238024 6238124 -275955540 + MIR SINE MIR 35 148 -114 2227 128 10 0 chr1 6238124 6238430 -275955234 + AluSx SINE Alu 1 309 -3 1251 112 12 0 chr1 6238441 6238602 -275955062 + AluSg/x SINE Alu 133 295 -15 394 273 181 12 chr1 6238655 6238900 -275954764 + L2 LINE L2 2773 3060 -253 2434 184 32 31 chr1 6238900 6239423 -275954241 - MER68 LTR ERV1 -1 561 38 207 0 0 0 chr1 6239991 6240014 -275953650 + (A)n Simple_repeat Simple_repeat 1 23 0 2474 80 3 0 chr1 6240193 6240493 -275953171 + AluY SINE Alu 1 301 -10 1708 169 52 33 chr1 6241009 6241377 -275952287 + THE1C LTR MaLR 1 375 0 419 293 75 63 chr1 6241586 6241921 -275951743 + L2 LINE L2 2909 3247 -25 261 119 0 0 chr1 6241932 6241974 -275951690 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 991 220 59 84 chr1 6243770 6244161 -275949503 + MLT1B LTR MaLR 4 384 -6 278 316 103 0 chr1 6244217 6244391 -275949273 - L2 LINE L2 -505 2809 2618 1971 253 69 23 chr1 6246565 6247131 -275946533 + MLT1E LTR MaLR 1 592 -1 611 217 84 7 chr1 6247133 6247276 -275946388 + MIR SINE MIR 37 190 -72 710 242 36 16 chr1 6247294 6247488 -275946176 + MER105 DNA DNA 7 204 0 1262 152 13 45 chr1 6248747 6248971 -275944693 + AluJo SINE Alu 86 302 -10 235 257 54 14 chr1 6249617 6249691 -275943973 - MER63 DNA MER1_type 0 1062 986 288 229 165 28 chr1 6249702 6249811 -275943853 - MER63 DNA MER1_type -81 755 6 2349 82 7 7 chr1 6249991 6250284 -275943380 + AluSq SINE Alu 1 293 -20 2569 48 10 16 chr1 6250310 6250623 -275943041 + AluY SINE Alu 1 311 0 1234 227 24 66 chr1 6251206 6251778 -275941886 + MLT2B1 LTR ERVL 1 442 -112 622 231 8 0 chr1 6251746 6251974 -275941690 + MLT2B1 LTR ERVL 267 397 -123 * 622 231 8 0 chr1 6251942 6252366 -275941298 + MLT2B1 LTR ERVL 267 397 -123 * 1237 214 6 59 chr1 6252334 6252684 -275940980 + MLT2B1 LTR ERVL 267 634 114 1522 87 31 26 chr1 6252684 6252913 -275940751 - MER30 DNA MER1_type 0 230 1 1237 214 6 59 chr1 6252913 6252931 -275940733 + MLT2B1 LTR ERVL 634 474 -46 204 40 0 0 chr1 6252931 6252956 -275940708 + (CA)n Simple_repeat Simple_repeat 2 26 0 1237 214 6 59 chr1 6252956 6253002 -275940662 + MLT2B1 LTR ERVL 473 520 0 306 250 139 9 chr1 6254727 6254835 -275938829 + MIR SINE MIR 32 153 -109 218 249 73 146 chr1 6255293 6255349 -275938315 - MIR SINE MIR -55 207 148 2304 120 0 0 chr1 6255349 6255658 -275938006 - AluY SINE Alu -2 309 1 218 249 73 146 chr1 6255658 6255806 -275937858 - MIR SINE MIR -114 148 18 1828 216 35 46 chr1 6255913 6256394 -275937270 + MLT1D LTR MaLR 8 483 -22 500 236 40 27 chr1 6257612 6257760 -275935904 + MER117 DNA MER1_type 1 150 -47 264 305 11 12 chr1 6257790 6257903 -275935761 - MIR3 SINE MIR -52 156 40 1493 241 84 44 chr1 6257959 6258528 -275935136 + MLT1E LTR MaLR 1 592 -1 207 339 9 26 chr1 6258575 6258690 -275934974 + L2 LINE L2 1945 2057 -1257 518 232 153 23 chr1 6258882 6259059 -275934605 - MIR SINE MIR -31 231 32 662 238 24 0 chr1 6259101 6259265 -275934399 - MER20 DNA MER1_type -21 198 31 372 94 0 0 chr1 6259959 6260012 -275933652 + (CA)n Simple_repeat Simple_repeat 1 53 0 242 258 72 62 chr1 6260086 6260183 -275933481 + L2 LINE L2 3169 3266 -6 460 211 18 18 chr1 6260718 6260827 -275932837 + MIR SINE MIR 45 153 -55 299 264 14 14 chr1 6260874 6261022 -275932642 + CT-rich Low_complexity Low_complexity 1 148 0 2039 134 14 3 chr1 6261310 6261601 -275932063 - AluJb SINE Alu -18 294 1 308 189 14 0 chr1 6262869 6262943 -275930721 + (TG)n Simple_repeat Simple_repeat 2 76 0 546 202 26 16 chr1 6263000 6263547 -275930117 + (TG)n Simple_repeat Simple_repeat 1 552 0 600 172 20 26 chr1 6263576 6263920 -275929744 + (TG)n Simple_repeat Simple_repeat 1 342 0 326 279 0 23 chr1 6264263 6264349 -275929315 + L2 LINE L2 3184 3267 -5 506 133 11 0 chr1 6265191 6265281 -275928383 + (TG)n Simple_repeat Simple_repeat 2 92 0 458 323 15 13 chr1 6265304 6265618 -275928046 + (TG)n Simple_repeat Simple_repeat 1 314 0 862 312 42 45 chr1 6266925 6267566 -275926098 + HAL1 LINE L1 69 707 -1800 769 246 75 12 chr1 6267651 6267903 -275925761 + HAL1 LINE L1 2240 2507 0 2081 112 7 7 chr1 6267911 6268197 -275925467 + AluSx SINE Alu 1 286 -26 288 200 0 0 chr1 6269102 6269162 -275924502 + (CA)n Simple_repeat Simple_repeat 1 60 0 1692 160 56 14 chr1 6269233 6269589 -275924075 - L1MB3 LINE L1 0 6183 5813 193 409 27 9 chr1 6271679 6271789 -275921875 + MIR SINE MIR 9 120 -142 576 299 28 71 chr1 6271961 6272285 -275921379 - L2 LINE L2 -1 3312 3003 333 311 31 88 chr1 6273318 6273513 -275920151 - MIR SINE MIR -56 152 9 734 184 69 17 chr1 6273938 6274112 -275919552 + MER5A DNA MER1_type 1 183 -6 547 317 11 63 chr1 6274250 6274616 -275919048 + MLT1I LTR MaLR 63 409 0 273 316 67 97 chr1 6277323 6277665 -275915999 + L2 LINE L2 2938 3269 -3 513 0 0 0 chr1 6277672 6277729 -275915935 + (GGATG)n Simple_repeat Simple_repeat 4 60 0 384 297 90 19 chr1 6277915 6278070 -275915594 + MIR SINE MIR 18 183 -79 204 244 0 0 chr1 6278726 6278767 -275914897 - L2 LINE L2 -5 3267 3227 779 241 59 15 chr1 6279484 6279687 -275913977 - MIR SINE MIR -38 224 13 258 288 144 8 chr1 6280143 6280261 -275913403 - MIR3 SINE MIR -49 159 26 2238 211 65 0 chr1 6280342 6280835 -275912829 + L1MB5 LINE L1 5650 6174 0 622 198 112 99 chr1 6282063 6282127 -275911537 - MER33 DNA MER1_type -2263 322 260 1089 81 0 7 chr1 6282127 6282275 -275911389 + L1PA8 LINE L1 6022 6168 -4 622 198 112 99 chr1 6282275 6282524 -275911140 - MER33 DNA MER1_type -2325 260 5 240 185 0 0 chr1 6283059 6283113 -275910551 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr1 6283583 6283604 -275910060 + AT_rich Low_complexity Low_complexity 1 21 0 340 324 101 45 chr1 6284236 6284591 -275909073 - L2 LINE L2 -1 3271 2897 468 0 0 0 chr1 6284769 6284821 -275908843 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1811 158 0 0 chr1 6284821 6285106 -275908558 - AluSx SINE Alu -27 285 1 689 274 99 16 chr1 6285327 6285641 -275908023 + MER102b DNA MER1_type 1 340 -1 577 235 0 41 chr1 6285823 6285993 -275907671 + LTR41 LTR ERVL 1 163 -610 205 211 0 0 chr1 6286017 6286055 -275907609 + (TTA)n Simple_repeat Simple_repeat 2 39 0 339 250 16 80 chr1 6286312 6286500 -275907164 + LTR41 LTR ERVL 597 772 -1 1498 110 0 0 chr1 6286510 6286730 -275906934 + AluSg/x SINE Alu 84 303 0 248 242 0 29 chr1 6287032 6287100 -275906564 + MIR SINE MIR 78 144 -64 380 246 16 25 chr1 6287176 6287298 -275906366 - L1ME1 LINE L1 -6 6160 6040 663 273 56 41 chr1 6287307 6287490 -275906174 - L1MDa LINE L1 -4631 1909 1717 1963 130 7 7 chr1 6287490 6287789 -275905875 + AluSx SINE Alu 2 300 -12 663 273 56 41 chr1 6287789 6287946 -275905718 - L1MDa LINE L1 -4823 1717 1564 1183 330 43 20 chr1 6287960 6288665 -275904999 - L1MDa LINE L1 -5657 1064 344 222 37 0 0 chr1 6289244 6289271 -275904393 + (TG)n Simple_repeat Simple_repeat 1 27 0 2032 152 3 44 chr1 6340123 6340486 -275853178 - MER7A DNA MER2_type 0 346 1 1026 148 12 6 chr1 6342548 6342717 -275850947 + AluJb SINE Alu 133 302 -10 299 306 10 93 chr1 6343300 6343493 -275850171 - MIR3 SINE MIR -3 205 29 2132 132 6 6 chr1 6343817 6344128 -275849536 - AluSx SINE Alu 0 312 2 315 267 0 0 chr1 6344409 6344495 -275849169 + L1MD2 LINE L1 5803 5888 -471 2047 117 81 119 chr1 6344589 6345034 -275848630 + MSTA LTR MaLR 1 428 0 24 0 0 0 chr1 6345142 6345166 -275848498 + AT_rich Low_complexity Low_complexity 1 24 0 209 265 0 0 chr1 6345678 6345727 -275847937 - L3 LINE CR1 -1 1576 1528 815 285 185 20 chr1 6347112 6347168 -275846496 - L2 LINE L2 -609 2705 2660 2105 136 16 10 chr1 6347168 6347477 -275846187 + AluSx SINE Alu 1 311 -1 815 285 185 20 chr1 6347477 6348107 -275845557 - L2 LINE L2 -654 2660 1906 289 245 358 6 chr1 6348110 6348473 -275845191 - L2 LINE L2 -1528 1786 1296 185 307 109 36 chr1 6348580 6348772 -275844892 - L2 LINE L2 -153 3160 2955 666 200 166 0 chr1 6348927 6349072 -275844592 + AluSp SINE Alu 137 305 -8 200 184 0 0 chr1 6349532 6349570 -275844094 + G-rich Low_complexity Low_complexity 4 41 0 261 294 0 15 chr1 6349688 6349756 -275843908 - MIR SINE MIR -170 92 26 198 345 45 9 chr1 6349971 6350081 -275843583 + MIR SINE MIR 19 132 -76 198 240 104 31 chr1 6351065 6351161 -275842503 - MIR3 SINE MIR -18 190 88 23 33 0 0 chr1 6353259 6353289 -275840375 + AT_rich Low_complexity Low_complexity 1 30 0 341 209 0 30 chr1 6353929 6353996 -275839668 + HAL1b LINE L1 1279 1343 -5 248 196 34 80 chr1 6355024 6355147 -275838517 + L1MD3 LINE L1 7904 8030 -12 2171 137 0 13 chr1 6355147 6355453 -275838211 + AluSx SINE Alu 1 302 -10 248 196 34 80 chr1 6355453 6355466 -275838198 + L1MD3 LINE L1 8030 8042 0 240 245 85 9 chr1 6355493 6355599 -275838065 + L1ME2 LINE L1 5954 6067 -97 1119 182 48 0 chr1 6357002 6357211 -275836453 + MER20 DNA MER1_type 1 219 0 1060 324 91 22 chr1 6357312 6357772 -275835892 + L3 LINE CR1 281 772 -805 2283 97 3 3 chr1 6358026 6358324 -275835340 + AluSg SINE Alu 3 300 -10 433 346 31 0 chr1 6359023 6359182 -275834482 + MIR SINE MIR 7 170 -92 376 310 66 19 chr1 6359634 6359905 -275833759 - L1ME3A LINE L1 -208 5962 5679 1692 195 51 95 chr1 6359934 6360254 -275833410 + Charlie1a DNA MER1_type 2 288 -2473 2234 109 7 0 chr1 6360254 6360548 -275833116 - AluSq SINE Alu -17 296 1 1692 195 51 95 chr1 6360548 6360795 -275832869 + Charlie1a DNA MER1_type 288 544 -911 3388 239 73 43 chr1 6360795 6361215 -275832449 + L1MEc LINE L1 36 442 -5773 2125 116 7 0 chr1 6361215 6361507 -275832157 + AluSg1 SINE Alu 1 294 -15 3388 239 73 43 chr1 6361507 6361774 -275831890 + L1MEc LINE L1 442 699 -5516 2461 91 0 3 chr1 6361774 6362082 -275831582 + AluSx SINE Alu 1 307 -5 3388 239 73 43 chr1 6362082 6363403 -275830261 + L1MEc LINE L1 699 1978 -4237 1985 152 3 0 chr1 6363403 6363712 -275829952 + AluSx SINE Alu 1 310 0 3388 239 73 43 chr1 6363712 6363827 -275829837 + L1MEc LINE L1 1978 2088 -4127 2146 116 0 7 chr1 6363827 6364121 -275829543 + AluY SINE Alu 1 292 -19 3388 239 73 43 chr1 6364121 6364466 -275829198 + L1MEc LINE L1 2088 2586 -3629 314 122 54 189 chr1 6364573 6364721 -275828943 + L1MEc LINE L1 2779 2906 -3309 3440 156 43 84 chr1 6364725 6365648 -275828016 + Charlie1a DNA MER1_type 571 1455 0 2334 71 44 3 chr1 6365787 6366082 -275827582 - AluY SINE Alu -4 307 1 369 302 132 15 chr1 6366130 6366338 -275827326 - MIR SINE MIR -19 243 16 357 232 40 73 chr1 6366360 6366511 -275827153 + L2 LINE L2 3084 3229 -84 2397 105 0 0 chr1 6367105 6367409 -275826255 + AluSx SINE Alu 9 312 0 2269 99 24 0 chr1 6368374 6368666 -275824998 + AluSc SINE Alu 1 299 -10 1988 149 0 10 chr1 6369158 6369453 -275824211 - AluJo SINE Alu -6 306 15 405 290 40 112 chr1 6369468 6369771 -275823893 + L2 LINE L2 2985 3265 -7 433 306 69 76 chr1 6370880 6371155 -275822509 - L1MCa LINE L1 -4757 1372 939 2425 99 0 3 chr1 6371244 6371556 -275822108 - AluSx SINE Alu -1 311 1 305 319 43 94 chr1 6371556 6372298 -275821366 - L1MCa LINE L1 -5113 1006 303 326 272 128 16 chr1 6372358 6372483 -275821181 - L1MCa LINE L1 -5933 186 48 275 174 41 143 chr1 6373225 6373323 -275820341 + MIR SINE MIR 35 122 -86 547 245 21 21 chr1 6373561 6373704 -275819960 - L1MA10 LINE L1 -3 6331 6189 743 189 11 0 chr1 6374447 6374622 -275819042 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 607 206 11 0 chr1 6374639 6374814 -275818850 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 431 257 254 50 chr1 6374850 6375247 -275818417 - L2 LINE L2 0 3313 2836 1712 174 7 4 chr1 6376532 6376808 -275816856 + AluJo SINE Alu 17 293 -19 1877 189 0 10 chr1 6376810 6377117 -275816547 + AluJb SINE Alu 1 304 -8 475 172 11 11 chr1 6377293 6377380 -275816284 - MER74B LTR ERVL -453 169 83 1620 236 64 79 chr1 6377398 6378130 -275815534 - L1ME LINE L1 -5348 722 2 390 316 61 27 chr1 6378330 6378659 -275815005 - L1MEd LINE L1 -3382 2747 2408 484 265 46 81 chr1 6378728 6378877 -275814787 - L1MEd LINE L1 -4888 1231 1093 2398 84 10 3 chr1 6378877 6379188 -275814476 - AluSq SINE Alu 0 313 1 484 265 46 81 chr1 6379188 6379298 -275814366 - L1MEd LINE L1 -5026 1093 981 1774 106 37 16 chr1 6379308 6379554 -275814110 - AluSx SINE Alu -13 299 49 218 236 135 47 chr1 6379621 6379769 -275813895 + L2 LINE L2 11 171 -3143 377 343 14 21 chr1 6379850 6379993 -275813671 + L2 LINE L2 3172 3313 0 880 131 56 0 chr1 6380134 6380294 -275813370 - L1MB3 LINE L1 -1 6182 6014 806 146 42 0 chr1 6380469 6380613 -275813051 - MSTA LTR MaLR 0 428 279 1709 174 42 0 chr1 6380614 6380901 -275812763 - AluJb SINE Alu -13 299 1 199 238 0 0 chr1 6382092 6382134 -275811530 - L3 LINE CR1 -1 1576 1535 316 237 206 0 chr1 6382455 6382552 -275811112 + L2 LINE L2 3197 3313 0 674 191 34 45 chr1 6384583 6384665 -275808999 - MER5B DNA MER1_type 0 178 97 2490 80 0 7 chr1 6384665 6384966 -275808698 - AluSx SINE Alu -13 299 1 674 191 34 45 chr1 6384966 6385061 -275808603 - MER5B DNA MER1_type -81 97 3 350 263 143 23 chr1 6387589 6387764 -275805900 - MLT1J LTR MaLR -309 202 7 293 245 53 0 chr1 6387775 6387869 -275805795 - L1M4 LINE L1 -3085 3061 2963 334 309 82 53 chr1 6387871 6388078 -275805586 - L1MC5 LINE L1 -30 7931 7719 1000 228 33 14 chr1 6388101 6388377 -275805287 - L1ME2 LINE L1 -10 6223 5943 210 37 0 0 chr1 6388383 6388410 -275805254 + (TA)n Simple_repeat Simple_repeat 1 27 0 563 127 45 82 chr1 6388421 6388555 -275805109 - L1PB3 LINE L1 -2 6152 6024 2552 174 67 72 chr1 6388559 6389286 -275804378 - L1ME2 LINE L1 -259 5974 5244 2064 126 0 10 chr1 6389286 6389579 -275804085 - AluSx SINE Alu -22 290 1 2552 174 67 72 chr1 6389579 6389640 -275804024 - L1ME2 LINE L1 -989 5244 5184 1835 172 10 10 chr1 6389640 6389948 -275803716 - AluJb SINE Alu -4 308 1 2552 174 67 72 chr1 6389948 6390084 -275803580 - L1ME2 LINE L1 -1049 5184 5071 2082 127 141 5 chr1 6390090 6390460 -275803204 - MSTA LTR MaLR -8 420 1 2420 179 61 7 chr1 6390460 6391030 -275802634 - L1ME2 LINE L1 -1148 5067 4467 1729 249 87 14 chr1 6391047 6392140 -275801524 - L1ME2 LINE L1 -3598 2617 1476 224 269 76 48 chr1 6392310 6392359 -275801305 + MIR3 SINE MIR 35 81 -127 2572 98 0 14 chr1 6392359 6392728 -275800936 - THE1B LTR MaLR 0 364 1 224 269 76 48 chr1 6392728 6392843 -275800821 + MIR3 SINE MIR 81 208 0 39 22 0 0 chr1 6394553 6394599 -275799065 + AT_rich Low_complexity Low_complexity 1 46 0 2291 104 0 0 chr1 6394612 6394901 -275798763 - AluSx SINE Alu -23 289 1 3189 105 2 25 chr1 6394901 6395415 -275798249 - L1MA2 LINE L1 -25 6279 5776 390 348 12 6 chr1 6395448 6395609 -275798055 + MIR SINE MIR 53 214 -48 2229 97 0 32 chr1 6395613 6395921 -275797743 + AluSc SINE Alu 1 298 -11 2744 82 0 0 chr1 6396131 6396495 -275797169 - THE1B LTR MaLR 0 364 1 1614 226 18 28 chr1 6397229 6397623 -275796041 + L1MB8 LINE L1 5784 6173 -5 181 330 17 51 chr1 6398062 6398180 -275795484 + MIR SINE MIR 34 147 -115 2845 186 3 42 chr1 6399574 6400101 -275793563 + L1MB1 LINE L1 5602 6105 -63 2309 131 0 0 chr1 6400101 6400414 -275793250 + AluSq SINE Alu 1 313 0 2845 186 3 42 chr1 6400414 6400476 -275793188 + L1MB1 LINE L1 6105 6168 0 204 299 51 34 chr1 6400666 6400783 -275792881 + L2 LINE L2 3150 3268 -4 25 65 0 0 chr1 6403082 6403128 -275790536 + AT_rich Low_complexity Low_complexity 1 46 0 583 266 57 11 chr1 6403131 6403308 -275790356 + L1MD2 LINE L1 5948 6132 -227 263 291 74 20 chr1 6403318 6403466 -275790198 + L1MD1 LINE L1 6079 6234 -8 191 167 241 0 chr1 6403608 6403662 -275790002 - MIR SINE MIR -89 173 107 359 250 205 0 chr1 6404673 6404785 -275788879 + L2 LINE L2 3179 3313 0 2306 119 3 0 chr1 6405991 6406293 -275787371 - AluSx SINE Alu -9 303 1 2084 137 0 7 chr1 6406445 6406745 -275786919 + AluSx SINE Alu 1 298 -14 1725 206 24 12 chr1 6406768 6407191 -275786473 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 6408024 6408162 -275785502 + (CA)n Simple_repeat Simple_repeat 2 139 0 223 294 24 32 chr1 6409989 6410115 -275783549 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 211 293 0 0 chr1 6410942 6411000 -275782664 + G-rich Low_complexity Low_complexity 1 58 0 308 250 10 31 chr1 6412065 6412161 -275781503 + LTR67 LTR ERVL 459 552 -5 807 211 29 29 chr1 6412315 6412519 -275781145 + MIR SINE MIR 39 242 -20 419 322 49 83 chr1 6412574 6412838 -275780826 - L2 LINE L2 -18 3254 3000 579 267 78 0 chr1 6413224 6413427 -275780237 + MIR SINE MIR 25 250 -12 1886 194 25 75 chr1 6415513 6416044 -275777620 + MLT1D LTR MaLR 1 504 -1 183 220 80 0 chr1 6418685 6418735 -275774929 + MIR SINE MIR 81 134 -128 198 0 0 0 chr1 6419190 6419212 -275774452 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 670 282 79 29 chr1 6420202 6420482 -275773182 + L1ME4a LINE L1 5800 6093 -28 2240 110 10 3 chr1 6420483 6420791 -275772873 - AluSx SINE Alu -2 310 1 26 30 0 0 chr1 6420825 6420858 -275772806 + AT_rich Low_complexity Low_complexity 1 33 0 2629 58 0 3 chr1 6420888 6421196 -275772468 - AluY SINE Alu -4 307 1 229 325 0 38 chr1 6421768 6421848 -275771816 - MIR SINE MIR -70 192 116 571 295 52 10 chr1 6421866 6422059 -275771605 - MIR SINE MIR -13 249 49 293 216 144 31 chr1 6422786 6422883 -275770781 + MLT1I LTR MaLR 294 401 -8 226 359 54 12 chr1 6423315 6423482 -275770182 + MIR SINE MIR 24 197 -65 205 319 121 14 chr1 6423485 6423626 -275770038 + MIR3 SINE MIR 17 172 -36 * 284 282 69 12 chr1 6423618 6423738 -275769926 - MIR SINE MIR -68 140 22 382 316 16 1 chr1 6424504 6424649 -275769015 + MIR SINE MIR 9 153 -62 317 254 16 56 chr1 6424774 6424900 -275768764 + MIR SINE MIR 94 214 -48 356 216 0 0 chr1 6425168 6425242 -275768422 + MIR SINE MIR 89 162 -100 4267 197 67 38 chr1 6425275 6425663 -275768001 + L1MB8 LINE L1 4105 4480 -1698 2031 112 10 26 chr1 6425663 6425967 -275767697 + AluSx SINE Alu 1 299 -13 4267 197 67 38 chr1 6425967 6426863 -275766801 + L1MB8 LINE L1 4480 5348 -830 1625 176 27 23 chr1 6426863 6427164 -275766500 + AluJo SINE Alu 11 312 0 4267 197 67 38 chr1 6427164 6427699 -275765965 + L1MB8 LINE L1 5348 5992 -186 1981 135 35 0 chr1 6427699 6427987 -275765677 + AluJb SINE Alu 1 298 -14 4267 197 67 38 chr1 6427987 6428180 -275765484 + L1MB8 LINE L1 5992 6178 0 441 229 97 21 chr1 6428182 6428326 -275765338 - L2 LINE L2 0 3313 3159 795 205 36 6 chr1 6428333 6428499 -275765165 - Tigger5 DNA MER2_type 0 2323 2153 655 155 17 9 chr1 6428491 6428607 -275765057 - Tigger5 DNA MER2_type -2206 117 1 * 398 249 136 86 chr1 6428607 6429015 -275764649 - L2 LINE L2 -160 3153 2708 2292 166 52 14 chr1 6429015 6429467 -275764197 + L1MB3 LINE L1 5682 6155 -28 2535 77 3 3 chr1 6429467 6429777 -275763887 - AluSg SINE Alu 0 310 1 2292 166 52 14 chr1 6429777 6429806 -275763858 + L1MB3 LINE L1 6155 6181 -2 398 249 136 86 chr1 6429806 6429896 -275763768 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 6430119 6430178 -275763486 + GA-rich Low_complexity Low_complexity 4 62 0 1953 126 23 23 chr1 6430655 6430956 -275762708 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 6431076 6431120 -275762544 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr1 6431255 6431285 -275762379 + (A)n Simple_repeat Simple_repeat 1 30 0 348 242 33 22 chr1 6431778 6431869 -275761795 + LTR16C LTR ERVL 388 479 -12 199 293 37 0 chr1 6432186 6432268 -275761396 + MIR3 SINE MIR 4 88 -120 1957 218 118 4 chr1 6432759 6433226 -275760438 + MLT2B1 LTR ERVL 1 520 0 255 115 0 77 chr1 6433341 6433393 -275760271 - L2 LINE L2 -93 3179 3132 403 276 55 0 chr1 6433393 6433520 -275760144 - L2 LINE L2 0 3313 3180 198 294 44 0 chr1 6434293 6434361 -275759303 + L2 LINE L2 3234 3304 -9 209 325 158 0 chr1 6435301 6435415 -275758249 + MIR SINE MIR 118 249 -13 983 101 0 57 chr1 6435424 6435919 -275757745 + (ATGGTG)n Simple_repeat Simple_repeat 1 647 0 740 86 27 54 chr1 6435930 6436155 -275757509 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 736 113 16 48 chr1 6436166 6436352 -275757312 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2483 74 0 0 chr1 6436378 6436674 -275756990 - AluY SINE Alu -11 300 5 243 313 111 14 chr1 6437428 6437572 -275756092 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 6438684 6438726 -275754938 + G-rich Low_complexity Low_complexity 4 47 0 3433 191 62 58 chr1 6439348 6439826 -275753838 + L1ME1 LINE L1 4589 5063 -1271 2002 129 56 0 chr1 6439826 6440112 -275753552 + AluSx SINE Alu 1 302 -10 3433 191 62 58 chr1 6440112 6440162 -275753502 + L1ME1 LINE L1 5063 5111 -1223 773 196 144 7 chr1 6440162 6440315 -275753349 + FAM SINE Alu 1 174 -1 3433 191 62 58 chr1 6440315 6441370 -275752294 + L1ME1 LINE L1 5111 6333 -1 316 329 0 0 chr1 6441708 6441793 -275751871 + MIR SINE MIR 92 176 -86 193 97 0 0 chr1 6443262 6443293 -275750371 - L2 LINE L2 -313 2959 2929 2238 120 0 22 chr1 6443588 6443722 -275749942 + AluSg SINE Alu 1 136 -174 2330 60 3 3 chr1 6443722 6444036 -275749628 + AluY SINE Alu 1 314 0 2238 120 0 22 chr1 6444036 6444217 -275749447 + AluSg SINE Alu 136 310 0 24 0 0 0 chr1 6444357 6444381 -275749283 + AT_rich Low_complexity Low_complexity 1 24 0 368 338 53 13 chr1 6444541 6444769 -275748895 - L2 LINE L2 -214 3099 2863 2324 211 54 6 chr1 6445532 6446049 -275747615 + MER119 DNA MER1_type 2 543 -40 1400 176 59 0 chr1 6446049 6446166 -275747498 + AluJo SINE Alu 1 110 -202 186 43 0 0 chr1 6446166 6446189 -275747475 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1400 176 59 0 chr1 6446189 6446310 -275747354 + AluJo SINE Alu 110 253 -59 26 0 0 0 chr1 6446310 6446336 -275747328 + AT_rich Low_complexity Low_complexity 1 26 0 1820 175 0 28 chr1 6446342 6446662 -275747002 + AluJo SINE Alu 1 311 -1 997 177 19 18 chr1 6446669 6447091 -275746573 + GA-rich Low_complexity Low_complexity 1 600 0 234 285 146 35 chr1 6447224 6447368 -275746296 - MIR SINE MIR -36 226 67 529 290 14 0 chr1 6449130 6449268 -275744396 + L2 LINE L2 3173 3312 -1 198 319 153 0 chr1 6449565 6449637 -275744027 + L2 LINE L2 3168 3250 -22 778 258 154 30 chr1 6450582 6451083 -275742581 + MLT1F1 LTR MaLR 5 567 0 218 235 73 0 chr1 6451093 6451161 -275742503 + MIR SINE MIR 73 145 -117 2451 107 19 25 chr1 6451450 6451816 -275741848 + THE1B LTR MaLR 1 364 0 11447 103 9 15 chr1 6451816 6453405 -275740259 + THE1B-int LTR MaLR 1 1580 0 2423 108 28 19 chr1 6453405 6453766 -275739898 + THE1B LTR MaLR 1 364 0 390 310 249 18 chr1 6455629 6456184 -275737480 + L2 LINE L2 2230 2912 -402 * 547 306 62 65 chr1 6456183 6456601 -275737063 + L2 LINE L2 2855 3271 -1 231 342 43 17 chr1 6456640 6456757 -275736907 + L2 LINE L2 3143 3262 -10 193 310 101 62 chr1 6458896 6458977 -275734687 - L2 LINE L2 0 3313 3224 2090 127 10 0 chr1 6458977 6459277 -275734387 + AluSq SINE Alu 1 303 -10 193 310 101 62 chr1 6459277 6459324 -275734340 - L2 LINE L2 -89 3224 3180 191 200 100 0 chr1 6460287 6460337 -275733327 - MIR SINE MIR -123 139 85 202 186 0 34 chr1 6461351 6461410 -275732254 + GA-rich Low_complexity Low_complexity 3 59 0 188 339 15 0 chr1 6461474 6461539 -275732125 - L2 LINE L2 0 3272 3207 184 276 181 29 chr1 6466040 6466145 -275727519 + L2 LINE L2 3170 3290 -23 2309 121 0 3 chr1 6467882 6468195 -275725469 + AluSq SINE Alu 1 312 -1 1748 133 3 117 chr1 6468484 6468836 -275724828 + AluJo SINE Alu 1 312 0 365 307 163 40 chr1 6468843 6469273 -275724391 - L2 LINE L2 -1036 2278 1796 232 327 78 20 chr1 6469335 6469488 -275724176 - L2 LINE L2 -1002 2312 2151 2559 211 129 14 chr1 6469967 6470710 -275722954 - L1ME2 LINE L1 -1 6163 5335 * 2662 251 69 73 chr1 6470700 6471281 -275722383 - L1ME1 LINE L1 -39 6127 5545 2066 120 17 10 chr1 6471281 6471303 -275722361 - AluSx SINE Alu -8 304 284 306 0 0 0 chr1 6471303 6471337 -275722327 + (TG)n Simple_repeat Simple_repeat 1 34 0 2066 120 17 10 chr1 6471337 6471615 -275722049 - AluSx SINE Alu -28 284 2 2662 251 69 73 chr1 6471615 6472983 -275720681 - L1ME1 LINE L1 -621 5545 4200 369 109 0 0 chr1 6473895 6473950 -275719714 + (TG)n Simple_repeat Simple_repeat 2 56 0 2420 89 0 0 chr1 6474912 6475216 -275718448 - AluY SINE Alu -7 304 1 206 179 60 60 chr1 6476260 6476344 -275717320 + L2 LINE L2 2895 2978 -294 612 336 190 10 chr1 6477496 6478247 -275715417 - L2 LINE L2 -43 3270 2406 2180 62 72 10 chr1 6480198 6480489 -275713175 - AluSg SINE Alu -1 309 1 228 67 0 0 chr1 6480874 6480904 -275712760 + (A)n Simple_repeat Simple_repeat 1 30 0 238 280 27 13 chr1 6482240 6482315 -275711349 + L1MD3 LINE L1 7900 7975 -20 1603 185 7 23 chr1 6482617 6482925 -275710739 + AluJo SINE Alu 1 303 -9 207 100 0 0 chr1 6484651 6484681 -275708983 + (A)n Simple_repeat Simple_repeat 1 30 0 454 259 184 4 chr1 6485285 6485540 -275708124 - L2 LINE L2 -3 3310 3010 405 0 0 0 chr1 6489151 6489196 -275704468 + (TG)n Simple_repeat Simple_repeat 2 46 0 712 213 150 38 chr1 6489434 6489721 -275703943 + MER33 DNA MER1_type 2 320 -4 631 231 153 27 chr1 6489726 6490021 -275703643 + L2 LINE L2 802 1133 -2181 1632 264 125 80 chr1 6490021 6490296 -275703368 + L2 LINE L2 1720 1981 -1332 1582 139 13 0 chr1 6490296 6490526 -275703138 + AluSx SINE Alu 3 235 -77 1632 264 125 80 chr1 6490526 6491133 -275702531 + L2 LINE L2 1981 2559 -754 1469 218 65 12 chr1 6491133 6491454 -275702210 - MER58B DNA MER1_type 0 341 4 1632 264 125 80 chr1 6491454 6491490 -275702174 + L2 LINE L2 2559 2592 -721 1986 134 0 3 chr1 6491490 6491802 -275701862 - AluSg SINE Alu 0 311 1 1632 264 125 80 chr1 6491802 6492134 -275701530 + L2 LINE L2 2592 3036 -277 863 239 113 13 chr1 6492303 6492541 -275701123 + MIR SINE MIR 1 262 0 426 225 73 73 chr1 6492544 6492695 -275700969 + L2 LINE L2 3163 3313 0 1953 157 7 3 chr1 6492796 6493101 -275700563 + AluJb SINE Alu 1 306 -6 1207 192 77 27 chr1 6493111 6493408 -275700256 + AluJo SINE Alu 1 312 0 1652 135 37 80 chr1 6493557 6493883 -275699781 + AluJo SINE Alu 1 312 0 189 308 26 13 chr1 6495514 6495592 -275698072 - L2 LINE L2 -16 3256 3178 188 291 76 13 chr1 6496461 6496540 -275697124 + MIR3 SINE MIR 104 187 -21 2126 121 0 3 chr1 6496819 6497116 -275696548 + AluSq SINE Alu 1 296 -17 272 263 0 42 chr1 6497241 6497336 -275696328 + A-rich Low_complexity Low_complexity 3 93 0 213 214 0 54 chr1 6497714 6497770 -275695894 - MER5B DNA MER1_type -125 53 1 2042 99 34 14 chr1 6497897 6498191 -275695473 + AluSg SINE Alu 1 300 -10 414 266 63 19 chr1 6498324 6498482 -275695182 + MIR SINE MIR 47 211 -51 860 227 32 19 chr1 6498999 6499215 -275694449 - MIR SINE MIR -28 234 16 189 250 12 62 chr1 6499345 6499425 -275694239 - MIR SINE MIR -71 191 116 22 0 0 0 chr1 6500206 6500228 -275693436 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr1 6501217 6501253 -275692411 + (TGG)n Simple_repeat Simple_repeat 3 38 0 24 32 0 0 chr1 6501598 6501629 -275692035 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr1 6505116 6505150 -275688514 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 537 123 0 0 chr1 6505167 6505240 -275688424 - AluSg/x SINE Alu -36 273 201 1615 147 16 60 chr1 6505360 6505674 -275687990 + AluJo SINE Alu 1 300 -12 26 30 0 0 chr1 6505698 6505731 -275687933 + AT_rich Low_complexity Low_complexity 1 33 0 448 231 89 13 chr1 6506246 6506418 -275687246 + L1MA10 LINE L1 5986 6332 -2 279 335 37 69 chr1 6507134 6507322 -275686342 - MER5A DNA MER1_type 0 189 8 569 310 16 22 chr1 6507624 6507808 -275685856 + MIR SINE MIR 47 229 -33 201 329 198 6 chr1 6507823 6507990 -275685674 - MIR SINE MIR -12 250 52 195 279 29 0 chr1 6508085 6508153 -275685511 + L2 LINE L2 3203 3272 0 801 143 0 8 chr1 6508365 6508484 -275685180 + FLAM_C SINE Alu 1 118 -25 615 298 120 64 chr1 6508511 6509255 -275684409 - L2 LINE L2 -1 3271 2497 2801 172 60 14 chr1 6509275 6509846 -275683818 + L1MC3 LINE L1 7187 7783 -2 331 326 134 8 chr1 6509859 6510120 -275683544 - L2 LINE L2 -867 2447 2154 1473 154 63 75 chr1 6510130 6510462 -275683202 + L1MA9 LINE L1 5980 6307 -5 2378 146 90 19 chr1 6510982 6511198 -275682466 + L1MB3 LINE L1 5683 5882 -301 2237 102 0 32 chr1 6511198 6511512 -275682152 + AluSx SINE Alu 1 304 -8 2378 146 90 19 chr1 6511512 6511761 -275681903 + L1MB3 LINE L1 5882 6181 -2 2036 120 31 0 chr1 6512215 6512506 -275681158 + AluSx SINE Alu 1 300 -12 2215 125 0 6 chr1 6512531 6512843 -275680821 - AluSx SINE Alu -2 310 1 320 332 129 22 chr1 6512935 6513206 -275680458 + L1ME4a LINE L1 4762 5061 -1085 420 284 76 42 chr1 6513386 6513650 -275680014 + L1ME4a LINE L1 5284 5556 -2252 1797 165 7 3 chr1 6513660 6513963 -275679701 - AluJo SINE Alu -8 304 1 303 282 134 76 chr1 6514037 6514431 -275679233 + L1ME4a LINE L1 5693 6109 -12 270 0 0 0 chr1 6514998 6515028 -275678636 + (CCA)n Simple_repeat Simple_repeat 3 32 0 589 190 58 16 chr1 6515422 6515543 -275678121 - L2 LINE L2 0 3313 3188 335 263 113 8 chr1 6515667 6515800 -275677864 + L2 LINE L2 3167 3313 0 552 325 73 34 chr1 6516106 6516786 -275676878 + L2 LINE L2 2412 3117 -196 228 143 0 24 chr1 6516869 6516911 -275676753 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 221 239 42 42 chr1 6516912 6516983 -275676681 + L2 LINE L2 3184 3254 -18 * 234 439 46 0 chr1 6516980 6517110 -275676554 + L2 LINE L2 3134 3269 -3 1565 245 21 89 chr1 6517261 6517789 -275675875 + LTR41 LTR ERVL 246 736 -37 2851 128 16 16 chr1 6517789 6518217 -275675447 + MSTA LTR MaLR 1 428 0 1565 245 21 89 chr1 6518217 6518247 -275675417 + LTR41 LTR ERVL 736 766 -7 1381 255 70 22 chr1 6518268 6518770 -275674894 - L1MDa LINE L1 -1794 4746 4221 441 258 97 0 chr1 6518786 6518910 -275674754 - L1MDa LINE L1 -3360 3180 3045 1150 174 36 101 chr1 6518961 6519237 -275674427 - Tigger3(Golem) DNA MER2_type -1 3028 2771 626 199 66 29 chr1 6519233 6519369 -275674295 - Tigger3(Golem) DNA MER2_type -2886 143 3 * 1087 275 98 38 chr1 6519402 6520253 -275673411 - L1MDa LINE L1 -3496 3044 2200 2379 237 98 40 chr1 6520418 6521186 -275672478 + MER21B LTR ERV1 1 812 -51 313 285 87 48 chr1 6521232 6521439 -275672225 - L1MDa LINE L1 -4695 1847 1633 2034 144 7 0 chr1 6521439 6521737 -275671927 - AluSx SINE Alu -12 300 1 960 148 0 0 chr1 6521737 6521872 -275671792 - AluSq/x SINE Alu -177 135 1 306 278 145 47 chr1 6521920 6522225 -275671439 - L1MDa LINE L1 -4928 1612 1298 251 253 116 11 chr1 6523311 6523406 -275670258 - L1 LINE L1 -1088 5058 4954 2270 122 0 0 chr1 6523412 6523716 -275669948 - AluSx SINE Alu -8 304 1 246 235 0 0 chr1 6524332 6524383 -275669281 + MER34 LTR ERV1 25 75 -467 283 242 114 40 chr1 6524643 6524792 -275668872 + MER34 LTR ERV1 368 527 -15 189 304 203 46 chr1 6524821 6525020 -275668644 + L2 LINE L2 2508 2674 -640 1286 210 80 25 chr1 6525020 6525306 -275668358 + AluJo SINE Alu 1 302 0 189 304 203 46 chr1 6525306 6525332 -275668332 + L2 LINE L2 2674 2695 -619 1802 145 24 27 chr1 6525332 6525458 -275668206 + AluSx SINE Alu 6 131 -181 2106 106 3 33 chr1 6525458 6525761 -275667903 + AluSg SINE Alu 1 294 -16 1802 145 24 27 chr1 6525761 6525930 -275667734 + AluSx SINE Alu 131 300 -12 189 304 203 46 chr1 6525930 6526009 -275667655 + L2 LINE L2 2695 2861 -453 1548 138 0 4 chr1 6526224 6526463 -275667201 + AluSx SINE Alu 61 298 -14 622 215 7 56 chr1 6526646 6526790 -275666874 + MER31B LTR ERV1 1 137 -329 2243 127 38 0 chr1 6527122 6527461 -275666203 + THE1B LTR MaLR 13 364 0 596 130 100 0 chr1 6527713 6527813 -275665851 - L1MB7 LINE L1 -6 6178 6069 2085 265 91 12 chr1 6527825 6528387 -275665277 + MLT2E LTR ERVL 21 626 -2 272 242 0 55 chr1 6528471 6528562 -275665102 - L1ME LINE L1 -306 5864 5779 1678 157 3 59 chr1 6528573 6528897 -275664767 - AluJb SINE Alu -6 306 1 937 244 97 15 chr1 6528908 6529446 -275664218 - L1ME3A LINE L1 -2 6160 5437 1494 121 0 0 chr1 6529508 6529707 -275663957 + AluSx SINE Alu 1 199 -113 185 298 60 36 chr1 6529931 6530015 -275663649 + L3 LINE CR1 1464 1549 -28 2289 104 0 13 chr1 6530333 6530649 -275663015 - AluSx SINE Alu 0 312 1 620 244 29 17 chr1 6530729 6530901 -275662763 - MER5B DNA MER1_type -2 176 3 443 329 59 5 chr1 6531663 6531894 -275661770 + L2 LINE L2 1727 1971 -1343 1918 210 30 48 chr1 6531904 6532403 -275661261 + MLT1D LTR MaLR 1 490 -15 1335 255 182 29 chr1 6532420 6533078 -275660586 + L2 LINE L2 1991 2547 -766 2316 82 7 0 chr1 6533078 6533369 -275660295 - AluSq SINE Alu -20 293 1 1335 255 182 29 chr1 6533369 6533847 -275659817 + L2 LINE L2 2547 3313 0 2305 95 10 3 chr1 6533880 6534186 -275659478 - AluSg SINE Alu -2 308 1 1286 164 56 0 chr1 6534230 6534498 -275659166 + AluJo SINE Alu 1 283 -29 288 264 0 66 chr1 6535255 6535361 -275658303 - L2 LINE L2 -88 3225 3127 21 57 0 0 chr1 6535469 6535504 -275658160 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 6535566 6535587 -275658077 + AT_rich Low_complexity Low_complexity 1 21 0 2184 64 13 60 chr1 6536017 6536331 -275657333 + AluY SINE Alu 2 300 -11 273 196 0 0 chr1 6536642 6536698 -275656966 + (CA)n Simple_repeat Simple_repeat 1 56 0 273 210 0 0 chr1 6537171 6537233 -275656431 + (TAGG)n Simple_repeat Simple_repeat 2 63 0 867 146 7 0 chr1 6537655 6537799 -275655865 + MER5A DNA MER1_type 44 188 -1 510 138 0 12 chr1 6538250 6538330 -275655334 + L1MB7 LINE L1 6040 6118 -66 1744 154 10 20 chr1 6538341 6538634 -275655030 + AluJo SINE Alu 9 298 -14 185 95 0 48 chr1 6538983 6539025 -275654639 + (TAAAAA)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr1 6539025 6539051 -275654613 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr1 6539100 6539130 -275654534 + AT_rich Low_complexity Low_complexity 1 30 0 294 292 73 0 chr1 6539255 6539351 -275654313 - MIR SINE MIR -86 122 20 285 268 49 12 chr1 6539933 6540015 -275653649 - L2 LINE L2 -1 3312 3228 207 0 0 0 chr1 6540229 6540252 -275653412 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1754 169 30 7 chr1 6540897 6541192 -275652472 + AluJb SINE Alu 3 304 -8 23 0 0 0 chr1 6541220 6541243 -275652421 + AT_rich Low_complexity Low_complexity 1 23 0 2450 87 0 0 chr1 6542154 6542465 -275651199 + AluY SINE Alu 1 311 0 575 183 15 44 chr1 6542484 6542621 -275651043 + L1ME1 LINE L1 6029 6161 -5 2325 91 3 0 chr1 6542629 6542925 -275650739 + AluSx SINE Alu 1 297 -15 2386 75 0 25 chr1 6542928 6543247 -275650417 + AluY SINE Alu 1 311 0 637 302 36 18 chr1 6543507 6543732 -275649932 + MIR SINE MIR 28 256 -6 2094 128 0 19 chr1 6544069 6544381 -275649283 + AluSx SINE Alu 1 306 -6 200 336 119 0 chr1 6544543 6544677 -275648987 + MIR SINE MIR 105 254 -8 2490 82 0 0 chr1 6544682 6544985 -275648679 + AluSc SINE Alu 1 303 -6 242 201 69 90 chr1 6546231 6546375 -275647289 + Charlie7 DNA MER1_type 2429 2569 -43 408 262 112 15 chr1 6549201 6549350 -275644314 + MIR3 SINE MIR 11 181 -27 405 39 0 0 chr1 6550426 6550477 -275643187 + (TG)n Simple_repeat Simple_repeat 1 51 0 541 239 114 22 chr1 6552483 6552667 -275640997 - MIR SINE MIR -10 252 52 303 195 149 15 chr1 6552858 6552947 -275640717 - MIR SINE MIR -90 118 34 1712 213 79 14 chr1 6553129 6553561 -275640103 + L1MC4 LINE L1 7434 7893 -149 877 190 0 39 chr1 6554155 6554334 -275639330 + FRAM SINE Alu 2 173 -3 1733 177 0 7 chr1 6554339 6554621 -275639043 + AluJb SINE Alu 9 288 -24 25 0 0 0 chr1 6554621 6554646 -275639018 + AT_rich Low_complexity Low_complexity 1 25 0 276 209 189 3 chr1 6554651 6554753 -275638911 + MIR SINE MIR 62 187 -21 2244 120 0 0 chr1 6554905 6555214 -275638450 - AluSx SINE Alu 0 312 4 953 209 6 0 chr1 6555475 6555633 -275638031 + FRAM SINE Alu 1 159 -7 561 247 93 16 chr1 6556820 6557014 -275636650 - L2 LINE L2 -1 3312 3104 190 318 101 47 chr1 6557070 6557134 -275636530 + MIR3 SINE MIR 10 69 -139 802 184 133 6 chr1 6557134 6557292 -275636372 + MER5B DNA MER1_type 1 178 0 190 318 101 47 chr1 6557292 6557356 -275636308 + MIR3 SINE MIR 69 145 -63 424 224 51 0 chr1 6557430 6557528 -275636136 - MER5A DNA MER1_type -83 106 4 1893 165 3 0 chr1 6557768 6558065 -275635599 + AluJo SINE Alu 1 298 -14 646 272 163 20 chr1 6558653 6559002 -275634662 - MLT1J2 LTR MaLR -51 399 1 216 326 22 33 chr1 6559195 6559287 -275634377 + L2 LINE L2 3223 3313 0 1044 121 0 36 chr1 6559493 6559659 -275634005 + FRAM SINE Alu 8 167 -9 212 152 76 0 chr1 6559869 6559935 -275633729 + (TTAA)n Simple_repeat Simple_repeat 4 74 0 203 301 119 42 chr1 6560873 6561016 -275632648 - MIR SINE MIR -50 212 59 198 245 38 0 chr1 6562031 6562084 -275631580 - MIR SINE MIR -50 212 158 1412 246 128 33 chr1 6562400 6562458 -275631206 + MLT1E LTR MaLR 2 53 -540 2373 66 7 0 chr1 6562458 6562747 -275630917 - AluY SINE Alu -20 291 1 1412 246 128 33 chr1 6562747 6563229 -275630435 + MLT1E LTR MaLR 53 593 0 202 340 98 12 chr1 6563381 6563625 -275630039 + L2 LINE L2 1912 2176 -1138 315 184 19 48 chr1 6563716 6563819 -275629845 + LTR33 LTR ERVL 19 118 -403 2461 99 0 0 chr1 6563945 6564257 -275629407 + AluSq SINE Alu 1 312 -1 220 242 208 17 chr1 6564283 6564403 -275629261 + L2 LINE L2 2368 2510 -804 207 0 0 0 chr1 6564521 6564544 -275629120 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 218 296 156 15 chr1 6565171 6565306 -275628358 + L2 LINE L2 2906 3059 -213 2126 71 0 11 chr1 6565534 6565800 -275627864 - AluSc SINE Alu -12 297 35 300 202 394 0 chr1 6566232 6566331 -275627333 + L2 LINE L2 3134 3271 -1 21 36 0 0 chr1 6566415 6566443 -275627221 + AT_rich Low_complexity Low_complexity 1 28 0 3267 180 7 25 chr1 6566820 6567463 -275626201 + L1ME1 LINE L1 4560 5192 -954 1489 199 7 20 chr1 6567463 6567760 -275625904 + AluJb SINE Alu 1 293 -19 3267 180 7 25 chr1 6567760 6567793 -275625871 + L1ME1 LINE L1 5192 5224 -922 3403 199 15 71 chr1 6567816 6568418 -275625246 + L1ME1 LINE L1 5224 5738 -428 824 120 17 8 chr1 6568418 6568535 -275625129 + FLAM_C SINE Alu 1 118 -15 3403 199 15 71 chr1 6568535 6568933 -275624731 + L1ME1 LINE L1 5738 6157 -9 1571 175 0 92 chr1 6568955 6569096 -275624568 + AluJo SINE Alu 1 153 -159 1971 91 18 14 chr1 6569096 6569372 -275624292 - AluSq SINE Alu -36 277 1 1571 175 0 92 chr1 6569372 6569568 -275624096 + AluJo SINE Alu 153 307 -5 1813 146 0 45 chr1 6570224 6570532 -275623132 + AluJb SINE Alu 1 294 -18 615 159 62 0 chr1 6571591 6571704 -275621960 - L1MB3 LINE L1 0 6183 6064 1941 143 0 16 chr1 6572843 6573150 -275620514 - AluJo SINE Alu -10 302 1 1017 132 86 17 chr1 6573398 6573572 -275620092 + MER44D DNA MER2_type 1 456 -153 221 286 0 32 chr1 6573592 6573655 -275620009 - L3 LINE CR1 -21 1556 1496 1603 166 32 11 chr1 6573904 6574187 -275619477 + AluJo SINE Alu 1 289 -23 27 62 0 0 chr1 6574187 6574235 -275619429 + AT_rich Low_complexity Low_complexity 1 48 0 2655 33 0 0 chr1 6574385 6574688 -275618976 + AluYb8 SINE Alu 9 311 -7 955 133 106 0 chr1 6574688 6574839 -275618825 + AluY SINE Alu 133 299 -12 2052 117 31 0 chr1 6574985 6575276 -275618388 + AluSq SINE Alu 1 300 -13 33 43 0 0 chr1 6575309 6575356 -275618308 + AT_rich Low_complexity Low_complexity 1 47 0 2217 108 0 22 chr1 6575589 6575904 -275617760 + AluSx SINE Alu 4 311 -1 1680 167 39 0 chr1 6575912 6576193 -275617471 + AluJb SINE Alu 1 292 -20 1893 137 29 13 chr1 6576836 6577143 -275616521 + AluJb SINE Alu 1 312 0 1650 174 0 27 chr1 6577778 6578077 -275615587 + AluJo SINE Alu 1 291 -21 207 125 0 0 chr1 6578348 6578388 -275615276 + (A)n Simple_repeat Simple_repeat 1 40 0 2035 109 48 14 chr1 6581011 6581305 -275612359 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 6582133 6582156 -275611508 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr1 6582859 6582893 -275610771 + (CA)n Simple_repeat Simple_repeat 2 35 0 2212 105 3 59 chr1 6583140 6583464 -275610200 + AluSx SINE Alu 1 306 -6 253 235 0 0 chr1 6583539 6583590 -275610074 + L2 LINE L2 3220 3270 -2 273 57 0 0 chr1 6585075 6585110 -275608554 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 22 35 0 0 chr1 6588406 6588435 -275605229 + GC_rich Low_complexity Low_complexity 1 29 0 947 262 24 31 chr1 6589319 6589659 -275604005 + L1MC4a LINE L1 5480 5806 -315 2071 144 0 3 chr1 6589778 6590076 -275603588 + AluSq SINE Alu 1 297 -16 2334 93 3 0 chr1 6590195 6590486 -275603178 - AluSp SINE Alu -21 292 1 983 188 96 50 chr1 6590743 6590780 -275602884 + Charlie1b DNA MER1_type 35 69 -2692 1825 168 7 0 chr1 6590780 6591065 -275602599 - AluJo SINE Alu -25 287 1 983 188 96 50 chr1 6591065 6591330 -275602334 + Charlie1b DNA MER1_type 69 351 -172 1147 168 96 0 chr1 6591330 6591538 -275602126 - AluJb SINE Alu -4 308 81 2225 83 4 0 chr1 6591540 6591816 -275601848 - AluSg SINE Alu -33 277 1 249 226 0 0 chr1 6591824 6591877 -275601787 + Charlie1b DNA MER1_type 471 523 0 2201 111 3 3 chr1 6592348 6592645 -275601019 + AluSg SINE Alu 1 297 -13 438 110 41 0 chr1 6592791 6592864 -275600800 - L1MD1 LINE L1 -14 6228 6153 2028 149 3 3 chr1 6593105 6593407 -275600257 + AluSx SINE Alu 1 302 -10 2179 104 0 35 chr1 6593891 6594209 -275599455 - AluSc SINE Alu -1 308 2 370 301 100 48 chr1 6594818 6594854 -275598810 + L1MC4a LINE L1 5793 5826 -1982 1787 133 26 48 chr1 6594854 6595163 -275598501 + AluSx SINE Alu 1 302 -10 370 301 100 48 chr1 6595163 6595375 -275598289 + L1MC4a LINE L1 5826 6054 -1754 959 255 120 32 chr1 6595416 6595636 -275598028 - L2 LINE L2 0 3313 3114 2472 90 3 3 chr1 6595636 6595948 -275597716 - AluSx SINE Alu 0 312 1 959 255 120 32 chr1 6595948 6596341 -275597323 - L2 LINE L2 -199 3114 2578 1721 182 95 52 chr1 6596341 6596710 -275596954 - MLT1D LTR MaLR -1 504 108 1882 156 0 0 chr1 6596710 6596985 -275596679 - AluSx SINE Alu -37 275 1 1721 182 95 52 chr1 6596985 6597098 -275596566 - MLT1D LTR MaLR -397 108 1 747 148 6 119 chr1 6597107 6597283 -275596381 - MER58A DNA MER1_type -22 202 47 1105 238 52 58 chr1 6597292 6597692 -275595972 - L2 LINE L2 -725 2589 2192 1766 156 61 10 chr1 6597907 6598202 -275595462 - AluJb SINE Alu -2 310 1 1122 82 0 0 chr1 6598202 6598337 -275595327 - AluSq/x SINE Alu -177 135 1 1220 135 0 11 chr1 6598351 6598536 -275595128 + FRAM SINE Alu 1 176 0 981 199 38 9 chr1 6598536 6598747 -275594917 + MLT1A2 LTR MaLR 158 374 0 1036 203 31 8 chr1 6598995 6599251 -275594413 - MER44D DNA MER2_type 0 605 289 549 236 159 13 chr1 6602995 6603152 -275590512 - MER5A DNA MER1_type -6 183 4 2967 63 15 5 chr1 6603335 6603732 -275589932 + MLT2A1 LTR ERVL 1 401 -43 243 109 16 31 chr1 6603732 6603796 -275589868 + (TA)n Simple_repeat Simple_repeat 1 63 0 1247 96 0 12 chr1 6604097 6604264 -275589400 + AluSp SINE Alu 149 313 0 633 237 37 93 chr1 6604787 6604851 -275588813 + MIR SINE MIR 47 113 -149 1920 161 3 3 chr1 6604851 6605155 -275588509 - AluJb SINE Alu -2 310 7 633 237 37 93 chr1 6605155 6605305 -275588359 + MIR SINE MIR 113 249 -13 1491 108 45 9 chr1 6605305 6605422 -275588242 + MER30 DNA MER1_type 1 112 -118 2217 119 7 0 chr1 6605422 6605716 -275587948 + AluSx SINE Alu 1 296 -16 1491 108 45 9 chr1 6605716 6605820 -275587844 + MER30 DNA MER1_type 112 230 0 228 35 0 0 chr1 6606015 6606044 -275587620 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 56 111 0 chr1 6606044 6606080 -275587584 + MLT2A1 LTR ERVL 405 444 0 339 302 95 9 chr1 6606185 6606301 -275587363 + MIR3 SINE MIR 12 137 -71 2065 188 26 75 chr1 6606313 6606406 -275587258 + MLT1D LTR MaLR 1 97 -408 2346 116 3 0 chr1 6606406 6606717 -275586947 - AluSx SINE Alu 0 312 1 2065 188 26 75 chr1 6606717 6607154 -275586510 + MLT1D LTR MaLR 97 505 0 1923 128 52 3 chr1 6607198 6607486 -275586178 + AluSq SINE Alu 9 310 -3 396 0 0 0 chr1 6607946 6607990 -275585674 + (CA)n Simple_repeat Simple_repeat 1 44 0 760 189 0 24 chr1 6608002 6608129 -275585535 + FLAM_C SINE Alu 2 125 -18 4564 23 0 0 chr1 6608287 6608785 -275584879 + SVA Other Other 897 1394 0 25 0 0 0 chr1 6608785 6608810 -275584854 + AT_rich Low_complexity Low_complexity 1 25 0 2430 61 0 0 chr1 6608825 6609125 -275584539 + AluY SINE Alu 1 300 0 409 195 34 119 chr1 6609126 6609165 -275584499 - Tigger7 DNA MER2_type -594 111 70 1749 201 3 0 chr1 6609165 6609463 -275584201 - AluJo SINE Alu -13 299 1 409 195 34 119 chr1 6609463 6609541 -275584123 - Tigger7 DNA MER2_type -635 70 4 2200 126 10 0 chr1 6609676 6609985 -275583679 - AluSx SINE Alu 0 312 1 2574 47 0 3 chr1 6609995 6610294 -275583370 - AluY SINE Alu -13 298 1 384 284 13 52 chr1 6610417 6610572 -275583092 + HAL1 LINE L1 39 187 -2320 231 202 111 40 chr1 6610641 6610740 -275582924 + HAL1 LINE L1 349 454 -2053 513 263 145 63 chr1 6611219 6611429 -275582235 - HAL1 LINE L1 -428 2079 1831 1796 172 0 23 chr1 6611429 6611731 -275581933 - AluJo SINE Alu -17 295 1 513 263 145 63 chr1 6611731 6611851 -275581813 - HAL1 LINE L1 -676 1831 1722 2277 82 10 13 chr1 6612680 6612984 -275580680 + AluSq SINE Alu 1 303 -10 1793 150 56 3 chr1 6613009 6613295 -275580369 - AluSx SINE Alu -11 301 1 2424 89 0 3 chr1 6613579 6613883 -275579781 + AluSx SINE Alu 1 303 -9 217 262 49 0 chr1 6614450 6614511 -275579153 - MIR SINE MIR -99 109 46 1549 212 7 13 chr1 6614552 6614854 -275578810 + AluJo SINE Alu 1 300 -12 238 276 67 29 chr1 6614904 6615009 -275578655 + L2 LINE L2 2697 2805 -509 2284 105 0 29 chr1 6615022 6615337 -275578327 - AluSg SINE Alu -4 306 1 198 303 50 67 chr1 6615337 6615456 -275578208 - MIR SINE MIR -113 149 33 1353 180 12 16 chr1 6615667 6615917 -275577747 + AluJo SINE Alu 50 298 -14 213 307 88 44 chr1 6616327 6616464 -275577200 - L2 LINE L2 -62 3210 3068 1918 124 47 0 chr1 6616497 6616771 -275576893 - AluSx SINE Alu -25 287 1 942 130 0 0 chr1 6616814 6616968 -275576696 + (TG)n Simple_repeat Simple_repeat 1 154 0 370 185 23 108 chr1 6617324 6617402 -275576262 - MER45A DNA AcHobo -1405 176 112 1744 162 7 10 chr1 6617402 6617692 -275575972 + AluJo SINE Alu 12 300 -12 370 185 23 108 chr1 6617692 6617743 -275575921 - MER45A DNA AcHobo -1469 112 58 322 223 64 0 chr1 6617871 6617965 -275575699 - MLT1L LTR MaLR -13 602 503 2315 105 3 10 chr1 6618588 6618902 -275574762 + AluSx SINE Alu 1 312 0 1020 112 0 87 chr1 6618996 6619023 -275574641 + L1PA16 LINE L1 5806 5834 -332 1619 116 39 4 chr1 6619023 6619256 -275574408 - AluSx SINE Alu -14 298 58 1020 112 0 87 chr1 6619256 6619424 -275574240 + L1PA16 LINE L1 5834 5984 -182 1562 154 65 31 chr1 6619424 6619716 -275573948 + AluJo SINE Alu 1 302 -10 1117 116 15 30 chr1 6619745 6619943 -275573721 + L1PA16 LINE L1 5971 6165 -1 2659 32 3 13 chr1 6620329 6620643 -275573021 - AluY SINE Alu 0 311 1 416 182 0 0 chr1 6621584 6621650 -275572014 + AluJ/FLAM SINE Alu 13 78 -234 1682 107 0 21 chr1 6621685 6621919 -275571745 - AluSx SINE Alu -83 229 1 736 129 0 0 chr1 6621919 6622020 -275571644 + AluSg/x SINE Alu 186 286 -23 961 240 81 3 chr1 6622060 6622129 -275571535 + L1M4 LINE L1 3437 3499 -2647 390 21 0 0 chr1 6622129 6622176 -275571488 + (CA)n Simple_repeat Simple_repeat 2 48 0 961 240 81 3 chr1 6622176 6622414 -275571250 + L1M4 LINE L1 3499 3768 -2378 2344 109 0 0 chr1 6622465 6622777 -275570887 + AluSx SINE Alu 1 312 0 1887 156 0 22 chr1 6622787 6623101 -275570563 + AluJo SINE Alu 5 311 -1 386 160 117 0 chr1 6623113 6623207 -275570457 + L1M4 LINE L1 4495 4599 -1547 524 131 20 20 chr1 6623207 6623306 -275570358 - LTR24B LTR ERV1 -440 136 38 1109 192 28 17 chr1 6623311 6623602 -275570062 + L1M4 LINE L1 5008 5301 -845 1598 115 0 25 chr1 6623758 6623993 -275569671 - AluSx SINE Alu -83 229 1 1075 105 0 0 chr1 6623993 6624126 -275569538 - AluSg SINE Alu -177 133 1 270 0 0 0 chr1 6624299 6624329 -275569335 + (TG)n Simple_repeat Simple_repeat 1 30 0 939 170 0 0 chr1 6624334 6624475 -275569189 - FRAM SINE Alu -32 144 4 2464 58 0 3 chr1 6624787 6625155 -275568509 + AluY SINE Alu 1 311 0 1930 152 7 0 chr1 6625680 6625989 -275567675 - AluJb SINE Alu -1 311 1 900 104 49 0 chr1 6625989 6626133 -275567531 - MLT1B LTR MaLR -211 179 29 246 185 56 19 chr1 6626177 6626285 -275567379 + (TA)n Simple_repeat Simple_repeat 1 112 0 34 24 0 0 chr1 6627529 6627570 -275566094 + AT_rich Low_complexity Low_complexity 1 41 0 348 149 0 15 chr1 6628091 6628158 -275565506 - MLT1B LTR MaLR -1 389 324 1457 138 29 72 chr1 6628163 6628439 -275565225 + AluJb SINE Alu 5 268 -44 328 232 58 14 chr1 6628445 6628514 -275565150 + L1MC4 LINE L1 6632 6703 -1339 649 200 4 109 chr1 6628632 6628862 -275564802 + L1MB7 LINE L1 5968 6173 -11 1414 135 38 4 chr1 6628988 6629225 -275564439 - THE1C LTR MaLR 0 375 131 334 161 0 0 chr1 6629222 6629278 -275564386 + AluJb SINE Alu 247 302 0 * 368 125 16 0 chr1 6629284 6629348 -275564316 + GA-rich Low_complexity Low_complexity 3 67 0 348 154 0 0 chr1 6629350 6629402 -275564262 + Alu SINE Alu 238 289 -13 * 528 134 67 148 chr1 6629388 6629537 -275564127 - THE1C LTR MaLR -238 137 1 3449 130 29 4 chr1 6629692 6630247 -275563417 - LTR24B LTR ERV1 -7 569 1 2181 117 0 7 chr1 6630305 6630604 -275563060 - AluSx SINE Alu -15 297 1 1892 164 0 19 chr1 6631864 6632175 -275561489 - AluJo SINE Alu -7 305 1 2309 89 7 0 chr1 6632198 6632489 -275561175 - AluSx SINE Alu -17 295 3 1679 126 28 82 chr1 6632520 6632821 -275560843 + L1MB3 LINE L1 5840 6121 -62 2246 94 3 0 chr1 6632821 6633109 -275560555 + AluSp SINE Alu 6 294 -19 1679 126 28 82 chr1 6633109 6633163 -275560501 + L1MB3 LINE L1 6121 6176 -7 1979 158 3 3 chr1 6633178 6633481 -275560183 + AluJb SINE Alu 1 303 -9 2199 92 20 7 chr1 6633481 6633774 -275559890 + AluSx SINE Alu 1 297 -15 277 81 0 0 chr1 6633774 6633811 -275559853 - MLT1B LTR MaLR -232 158 122 1205 143 0 6 chr1 6633815 6633990 -275559674 - AluSq SINE Alu -7 306 133 550 122 61 43 chr1 6633991 6634106 -275559558 - MLT1B LTR MaLR -273 117 1 938 196 13 70 chr1 6634172 6634402 -275559262 - MER20 DNA MER1_type -2 217 1 1073 308 68 75 chr1 6634545 6634641 -275559023 - L2 LINE L2 -1 3312 3217 2215 106 3 37 chr1 6634641 6634963 -275558701 - AluSx SINE Alu -1 311 1 1073 308 68 75 chr1 6634963 6635145 -275558519 - L2 LINE L2 -96 3217 3035 1617 118 0 0 chr1 6635145 6635366 -275558298 - AluSg/x SINE Alu -15 295 75 1073 308 68 75 chr1 6635366 6636064 -275557600 - L2 LINE L2 -278 3035 2359 612 194 8 8 chr1 6636074 6636203 -275557461 - L1MB3 LINE L1 0 6183 6055 2159 114 3 3 chr1 6636285 6636582 -275557082 + AluSx SINE Alu 1 297 -15 382 264 91 0 chr1 6636584 6636705 -275556959 - MER94 DNA DNA 0 134 3 2515 112 117 5 chr1 6637544 6637929 -275555735 + MSTA LTR MaLR 1 428 0 1230 217 110 35 chr1 6638177 6638606 -275555058 - MLT1C LTR MaLR -1 466 6 2071 71 26 15 chr1 6638659 6638927 -275554737 + AluSg SINE Alu 35 305 -5 866 175 0 138 chr1 6639396 6639534 -275554130 + AluSx SINE Alu 1 92 -220 2357 112 0 0 chr1 6639534 6639846 -275553818 + AluSx SINE Alu 1 312 0 866 175 0 138 chr1 6639846 6639953 -275553711 + AluSx SINE Alu 92 212 -100 28 0 0 0 chr1 6639990 6640018 -275553646 + AT_rich Low_complexity Low_complexity 1 28 0 1971 141 13 13 chr1 6640618 6640924 -275552740 + AluJo SINE Alu 3 308 -4 1080 71 0 57 chr1 6641014 6641155 -275552509 + AluSq/x SINE Alu 1 133 -179 2217 96 0 4 chr1 6641165 6641445 -275552219 + AluSg SINE Alu 1 279 -31 1061 145 6 17 chr1 6642063 6642235 -275551429 - FRAM SINE Alu -6 170 1 2140 96 0 31 chr1 6642247 6642428 -275551236 - AluSx SINE Alu 0 307 137 2760 32 0 10 chr1 6642428 6642742 -275550922 - AluY SINE Alu 0 311 1 2140 96 0 31 chr1 6642742 6642872 -275550792 - AluSx SINE Alu -170 137 5 302 268 107 0 chr1 6642985 6643097 -275550567 + L2 LINE L2 3190 3313 0 978 171 0 0 chr1 6643172 6643324 -275550340 + FRAM SINE Alu 2 153 -23 31 44 0 0 chr1 6643324 6643369 -275550295 + AT_rich Low_complexity Low_complexity 1 45 0 696 192 0 0 chr1 6643388 6643513 -275550151 - MLT1B LTR MaLR 0 390 266 2185 113 7 3 chr1 6643530 6643840 -275549824 - AluSq SINE Alu -2 311 1 235 315 95 0 chr1 6644102 6644211 -275549453 + MIR SINE MIR 59 179 -29 207 0 0 0 chr1 6644575 6644598 -275549066 + (A)n Simple_repeat Simple_repeat 1 23 0 1754 186 0 38 chr1 6644713 6645030 -275548634 + AluJo SINE Alu 1 305 -7 2220 96 27 7 chr1 6645261 6645553 -275548111 + AluSx SINE Alu 1 298 -14 2202 119 0 0 chr1 6645564 6645857 -275547807 + AluSx SINE Alu 1 293 -19 226 274 65 65 chr1 6646228 6646381 -275547283 - L2 LINE L2 0 3313 3161 500 290 6 33 chr1 6646454 6646544 -275547120 + MIR SINE MIR 14 98 -164 2326 119 129 5 chr1 6646544 6646923 -275546741 - MSTA LTR MaLR -2 426 1 500 290 6 33 chr1 6646923 6647015 -275546649 + MIR SINE MIR 98 191 -71 3888 171 12 34 chr1 6647433 6647480 -275546184 + L1MB3 LINE L1 5445 5491 -692 1959 109 64 7 chr1 6647480 6647763 -275545901 + AluSx SINE Alu 1 299 -13 3888 171 12 34 chr1 6647763 6648175 -275545489 + L1MB3 LINE L1 5491 5884 -299 1775 146 56 3 chr1 6648175 6648463 -275545201 + AluSq SINE Alu 2 304 -9 3888 171 12 34 chr1 6648463 6648749 -275544915 + L1MB3 LINE L1 5884 6175 -8 1954 147 13 7 chr1 6648846 6649153 -275544511 + AluJb SINE Alu 1 309 -3 503 168 30 59 chr1 6649435 6649536 -275544128 + AluJo/FLAM SINE Alu 30 127 -185 2363 81 0 26 chr1 6649536 6649844 -275543820 + AluY SINE Alu 1 300 -11 474 158 0 13 chr1 6650368 6650444 -275543220 + MER5A DNA MER1_type 1 75 -114 2310 104 3 3 chr1 6650444 6650743 -275542921 + AluSx SINE Alu 1 299 -13 873 154 8 0 chr1 6650757 6650887 -275542777 + FLAM_C SINE Alu 5 135 -8 2560 75 3 0 chr1 6651311 6651619 -275542045 - AluSp SINE Alu -4 309 1 1761 151 6 58 chr1 6651621 6651786 -275541878 - AluJb SINE Alu -16 296 124 240 35 0 0 chr1 6651786 6651815 -275541849 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1943 134 4 7 chr1 6651817 6652094 -275541570 - AluSx SINE Alu -29 283 8 1761 151 6 58 chr1 6652094 6652237 -275541427 - AluJb SINE Alu -189 123 1 2382 94 3 0 chr1 6652425 6652723 -275540941 - AluSx SINE Alu -13 299 1 1649 183 0 24 chr1 6652811 6652976 -275540688 - AluJo SINE Alu -14 298 142 2717 36 0 0 chr1 6652976 6653277 -275540387 - AluY SINE Alu -10 301 1 1649 183 0 24 chr1 6653277 6653406 -275540258 - AluJo SINE Alu -170 142 11 728 199 22 7 chr1 6653407 6653543 -275540121 - AluJo SINE Alu -173 139 2 2103 100 3 3 chr1 6653882 6654181 -275539483 + AluSx SINE Alu 1 299 -13 644 167 17 8 chr1 6654281 6654401 -275539263 + MER101 LTR ERV1 354 474 0 * 806 178 67 54 chr1 6654401 6654806 -275538858 + Charlie1 DNA MER1_type 175 2739 -22 263 170 38 0 chr1 6654875 6654928 -275538736 + Charlie1 DNA MER1_type 2707 2761 0 * 888 266 110 30 chr1 6654928 6655290 -275538374 - MLT1I LTR MaLR -16 393 3 2600 53 0 3 chr1 6655907 6656208 -275537456 - AluY SINE Alu -11 300 1 471 256 64 8 chr1 6657425 6657550 -275536114 - L2 LINE L2 -4 3268 3137 229 377 91 32 chr1 6657592 6657966 -275535698 - L2 LINE L2 -502 2812 2417 2029 84 55 4 chr1 6658067 6658341 -275535323 + AluSp SINE Alu 11 298 -15 309 294 69 0 chr1 6658521 6658623 -275535041 - MIR SINE MIR -66 196 88 291 311 198 6 chr1 6658885 6659052 -275534612 - MIR SINE MIR -43 219 21 1751 59 0 0 chr1 6659196 6659398 -275534266 + AluY SINE Alu 3 204 -107 2445 93 0 0 chr1 6661161 6661463 -275532201 - AluSp SINE Alu -11 302 1 2046 126 7 27 chr1 6661465 6661766 -275531898 - AluSx SINE Alu -17 295 1 2210 120 0 10 chr1 6661925 6662234 -275531430 - AluSg SINE Alu -4 306 1 23 0 0 0 chr1 6662234 6662257 -275531407 + AT_rich Low_complexity Low_complexity 1 23 0 628 198 0 0 chr1 6662270 6662371 -275531293 - FRAM SINE Alu -24 152 52 797 157 119 27 chr1 6662371 6662387 -275531277 + LTR36 LTR ERV1 3 16 -595 2176 119 13 3 chr1 6662387 6662690 -275530974 - AluSx SINE Alu -6 306 1 797 157 119 27 chr1 6662690 6662858 -275530806 + LTR36 LTR ERV1 16 204 -407 822 234 172 7 chr1 6662892 6663165 -275530499 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 6663216 6663237 -275530427 + AT_rich Low_complexity Low_complexity 1 21 0 2439 64 0 32 chr1 6663237 6663549 -275530115 + AluY SINE Alu 1 302 -9 1285 81 12 0 chr1 6663551 6663712 -275529952 + AluY SINE Alu 135 297 -14 760 158 0 47 chr1 6663712 6663839 -275529825 - AluJo/FLAM SINE Alu -181 131 11 180 298 35 114 chr1 6663899 6664058 -275529606 - MIR SINE MIR 0 262 129 2211 116 0 20 chr1 6664058 6664361 -275529303 + AluSg SINE Alu 1 297 -13 180 298 35 114 chr1 6664361 6664456 -275529208 - MIR SINE MIR -133 129 28 244 336 79 14 chr1 6664489 6664614 -275529050 - MIR SINE MIR -61 147 33 1800 123 38 131 chr1 6665861 6666228 -275527436 - MER1B DNA MER1_type -4 333 1 2330 43 54 0 chr1 6666346 6666625 -275527039 - AluY SINE Alu -17 294 1 1750 115 4 8 chr1 6667196 6667440 -275526224 + AluSq SINE Alu 1 243 -70 241 200 40 0 chr1 6667442 6667492 -275526172 + L2 LINE L2 2984 3035 -278 1847 157 23 7 chr1 6667492 6667797 -275525867 - AluJo SINE Alu -2 310 1 941 165 18 29 chr1 6667807 6667977 -275525687 - FRAM SINE Alu -8 168 1 635 246 68 85 chr1 6667977 6668040 -275525624 + L2 LINE L2 3020 3083 -230 1944 161 0 3 chr1 6668040 6668339 -275525325 + AluJo SINE Alu 1 298 -14 635 246 68 85 chr1 6668339 6668568 -275525096 + L2 LINE L2 3083 3307 -6 439 186 74 147 chr1 6668716 6669050 -275524614 + LTR37B LTR ERV1 118 459 -9 2276 84 7 0 chr1 6669059 6669345 -275524319 + AluSg SINE Alu 1 288 -22 1511 161 0 29 chr1 6669445 6669718 -275523946 + AluJo SINE Alu 44 308 -4 2232 103 7 3 chr1 6670109 6670409 -275523255 - AluSg SINE Alu -9 301 1 2180 122 0 10 chr1 6670436 6670727 -275522937 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 6670727 6670752 -275522912 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2180 122 0 10 chr1 6670752 6670764 -275522900 + AluSx SINE Alu 290 301 -11 2646 55 0 0 chr1 6670967 6671274 -275522390 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 6672723 6672744 -275520920 + GC_rich Low_complexity Low_complexity 1 21 0 227 188 0 14 chr1 6672876 6672945 -275520719 + (CCCGAA)n Simple_repeat Simple_repeat 3 70 0 2316 97 0 10 chr1 6673267 6673576 -275520088 - AluSc SINE Alu -1 308 3 362 269 161 47 chr1 6673618 6673811 -275519853 - MIR SINE MIR -12 250 36 2318 111 0 0 chr1 6674026 6674324 -275519340 + AluSx SINE Alu 1 298 -14 212 262 0 0 chr1 6674326 6674368 -275519296 + polypurine Low_complexity Low_complexity 5 46 0 910 181 165 0 chr1 6674368 6674550 -275519114 + AluSx SINE Alu 1 212 -100 650 140 0 0 chr1 6674555 6674648 -275519016 + AluSp SINE Alu 141 233 -80 197 33 33 0 chr1 6674659 6674689 -275518975 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 660 70 0 0 chr1 6674708 6674794 -275518870 + L1PA10 LINE L1 5805 5890 -278 313 81 6 0 chr1 6674794 6674852 -275518812 + Alu SINE Alu 1 40 -260 1407 138 73 19 chr1 6674852 6675079 -275518585 - L1PA11 LINE L1 -24 6150 5906 2528 58 0 13 chr1 6675079 6675388 -275518276 - AluY SINE Alu -6 305 1 1407 138 73 19 chr1 6675388 6675420 -275518244 - L1PA11 LINE L1 -268 5906 5877 2156 107 10 10 chr1 6675737 6676047 -275517617 + AluSx SINE Alu 1 310 -2 1633 177 38 3 chr1 6676316 6676604 -275517060 - AluJb SINE Alu -14 298 1 1940 253 196 25 chr1 6676710 6677774 -275515890 - L2 LINE L2 -787 2527 1283 310 310 31 0 chr1 6678091 6678220 -275515444 - HAL1 LINE L1 -873 1634 1502 1186 127 0 33 chr1 6678234 6678415 -275515249 - AluSg/x SINE Alu -1 309 135 216 320 13 13 chr1 6678823 6678901 -275514763 - L2 LINE L2 -773 2541 2464 225 94 0 0 chr1 6679637 6679669 -275513995 + (TG)n Simple_repeat Simple_repeat 2 33 0 1356 128 59 0 chr1 6679669 6679873 -275513791 - AluJo SINE Alu -27 285 70 1543 185 0 58 chr1 6679886 6680048 -275513616 - AluJo SINE Alu -17 295 158 2207 114 14 0 chr1 6680048 6680338 -275513326 - AluSx SINE Alu -18 294 1 1543 185 0 58 chr1 6680338 6680483 -275513181 - AluJo SINE Alu -154 158 6 716 219 7 0 chr1 6680526 6680687 -275512977 + FRAM SINE Alu 9 170 0 2291 78 14 0 chr1 6680689 6680984 -275512680 + AluY SINE Alu 3 301 -10 1846 159 21 0 chr1 6680984 6681273 -275512391 + AluJo SINE Alu 1 295 -17 1067 73 0 0 chr1 6681297 6681420 -275512244 + AluSq/x SINE Alu 13 135 -178 2282 100 0 0 chr1 6681420 6681711 -275511953 + AluY SINE Alu 1 291 -20 2188 100 7 13 chr1 6681714 6682013 -275511651 + AluY SINE Alu 1 297 -14 280 241 114 0 chr1 6682622 6682701 -275510963 - L1MD3 LINE L1 -93 7902 7815 2018 117 10 10 chr1 6682703 6682994 -275510670 + AluSx SINE Alu 9 299 -13 1193 140 6 0 chr1 6682994 6683165 -275510499 + AluSg/x SINE Alu 134 305 -7 239 200 0 0 chr1 6683167 6683212 -275510452 - L1MC4a LINE L1 -150 7658 7614 417 161 0 37 chr1 6683242 6683323 -275510341 - U6 snRNA snRNA -29 78 1 2006 135 3 14 chr1 6683335 6683632 -275510032 - AluSx SINE Alu -18 294 1 379 127 0 0 chr1 6683652 6683707 -275509957 + AluJb SINE Alu 94 148 -154 2568 73 0 0 chr1 6683755 6684058 -275509606 + AluYa5 SINE Alu 1 303 -8 967 90 0 0 chr1 6684060 6684182 -275509482 + AluSp/q SINE Alu 170 291 -22 3175 159 58 20 chr1 6684209 6684393 -275509271 - L1MB4 LINE L1 -172 6008 5832 1745 178 13 16 chr1 6684393 6684697 -275508967 + AluJb SINE Alu 1 303 -9 3175 159 58 20 chr1 6684697 6685167 -275508497 - L1MB4 LINE L1 -348 5832 5329 2127 123 38 0 chr1 6685183 6685476 -275508188 - AluSx SINE Alu -8 304 1 2053 84 49 21 chr1 6685482 6685769 -275507895 - AluSq SINE Alu -1 312 18 1222 101 6 22 chr1 6686041 6686059 -275507605 + AluSg/x SINE Alu 118 135 -177 2158 123 3 7 chr1 6686059 6686367 -275507297 + AluSx SINE Alu 1 307 -5 1222 101 6 22 chr1 6686367 6686521 -275507143 + AluSg/x SINE Alu 131 288 -20 237 33 0 0 chr1 6686521 6686551 -275507113 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 353 281 188 12 chr1 6687132 6687292 -275506372 + MIR SINE MIR 57 244 -18 2444 72 0 0 chr1 6687297 6687590 -275506074 - AluY SINE Alu -18 293 1 2437 87 3 0 chr1 6687943 6688242 -275505422 - AluSp SINE Alu -13 300 1 1473 210 4 0 chr1 6688289 6688541 -275505123 + AluJb SINE Alu 1 253 -59 1442 129 42 104 chr1 6688557 6688895 -275504769 + AluSx SINE Alu 1 312 0 660 70 0 0 chr1 6688905 6688991 -275504673 + L1PA10 LINE L1 5805 5890 -278 256 107 30 0 chr1 6688991 6689048 -275504616 + AluJb SINE Alu 117 170 -132 1311 143 82 4 chr1 6689048 6689292 -275504372 - L1PA11 LINE L1 -24 6150 5888 1236 150 0 0 chr1 6689415 6689602 -275504062 + AluJb SINE Alu 117 303 -9 282 308 14 7 chr1 6690005 6690117 -275503547 - MIR SINE MIR -51 211 100 2344 88 0 14 chr1 6690503 6690800 -275502864 + AluY SINE Alu 1 293 -18 1670 137 12 99 chr1 6690829 6691151 -275502513 + AluJo SINE Alu 1 294 -18 488 222 56 19 chr1 6691164 6691326 -275502338 + L2 LINE L2 2856 3023 -290 246 225 50 38 chr1 6691359 6691439 -275502225 + MIR SINE MIR 75 155 -107 1564 119 5 0 chr1 6692199 6692417 -275501247 + AluSx SINE Alu 1 219 -93 751 130 0 32 chr1 6692417 6692540 -275501124 + AluSg/x SINE Alu 186 304 -6 548 224 133 12 chr1 6692579 6692744 -275500920 - MER58 DNA MER1_type -2177 243 59 736 199 0 22 chr1 6694230 6694366 -275499298 + AluJo SINE Alu 2 134 -178 2113 123 0 0 chr1 6694367 6694644 -275499020 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 6694654 6694680 -275498984 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2181 84 7 3 chr1 6694680 6694966 -275498698 + AluY SINE Alu 1 287 -24 2303 91 0 26 chr1 6695486 6695656 -275498008 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 6695656 6695714 -275497950 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2045 114 4 4 chr1 6695714 6695994 -275497670 - AluSc SINE Alu -29 280 1 2303 91 0 26 chr1 6695994 6696131 -275497533 - AluSx SINE Alu -182 130 1 1585 140 85 51 chr1 6696131 6696287 -275497377 - AluJb SINE Alu -9 303 154 2165 82 4 0 chr1 6696287 6696567 -275497097 - AluY SINE Alu 0 311 31 1585 140 85 51 chr1 6696567 6696703 -275496961 - AluJb SINE Alu -158 154 1 2178 128 7 0 chr1 6696976 6697272 -275496392 + AluSg SINE Alu 1 298 -12 1824 157 14 7 chr1 6697290 6697584 -275496080 + AluSx SINE Alu 5 300 -12 2078 128 21 0 chr1 6697705 6697993 -275495671 + AluSx SINE Alu 5 298 -14 1413 135 24 0 chr1 6698158 6698366 -275495298 - AluSg/x SINE Alu -14 298 86 1816 163 0 14 chr1 6698394 6698689 -275494975 + AluJb SINE Alu 1 291 -21 747 110 0 0 chr1 6698697 6698797 -275494867 + AluS SINE Alu 2 101 -211 2438 82 3 0 chr1 6698961 6699265 -275494399 + AluY SINE Alu 5 309 -2 2072 114 4 0 chr1 6699447 6699754 -275493910 + AluSx SINE Alu 1 308 0 626 250 158 45 chr1 6699761 6700165 -275493499 + HAL1 LINE L1 1382 1831 -676 810 241 22 13 chr1 6700177 6700409 -275493255 + L1ME1 LINE L1 5907 6140 -26 2107 137 38 47 chr1 6700424 6700711 -275492953 + MER65A LTR ERV1 6 289 -156 2324 100 3 13 chr1 6700711 6701021 -275492643 - AluSx SINE Alu -1 311 5 2107 137 38 47 chr1 6701021 6701177 -275492487 + MER65A LTR ERV1 289 445 0 2333 115 0 0 chr1 6701178 6701483 -275492181 - AluSx SINE Alu -6 306 2 390 366 46 6 chr1 6701523 6701698 -275491966 + L1MEd LINE L1 1053 1234 -4971 418 318 8 29 chr1 6701726 6701971 -275491693 + L1MEd LINE L1 1545 1784 -4612 861 214 0 19 chr1 6702158 6702312 -275491352 + FRAM SINE Alu 1 151 -15 375 23 0 0 chr1 6702312 6702356 -275491308 + (GA)n Simple_repeat Simple_repeat 2 45 0 2037 92 100 0 chr1 6702536 6702807 -275490857 + AluSx SINE Alu 1 298 -14 1220 303 85 38 chr1 6702849 6703692 -275489972 + L2 LINE L2 2307 3184 -129 990 171 5 50 chr1 6704691 6704890 -275488774 + AluSg/x SINE Alu 120 309 -1 222 37 0 0 chr1 6704947 6704974 -275488690 + (TG)n Simple_repeat Simple_repeat 2 28 0 1955 151 0 7 chr1 6704989 6705288 -275488376 - AluJb SINE Alu -15 297 1 451 141 0 0 chr1 6705294 6705372 -275488292 + MER53 DNA DNA 111 188 -1 2228 112 0 3 chr1 6705542 6705837 -275487827 + AluSx SINE Alu 1 294 -18 2236 133 0 0 chr1 6705839 6706141 -275487523 + AluSx SINE Alu 1 302 -10 1828 180 6 3 chr1 6706341 6706652 -275487012 + AluJo SINE Alu 1 312 0 2595 63 0 19 chr1 6707158 6707475 -275486189 + AluY SINE Alu 1 311 0 2630 62 0 0 chr1 6707545 6707852 -275485812 + AluSg SINE Alu 1 307 -3 2123 92 23 20 chr1 6708882 6709185 -275484479 + AluSx SINE Alu 1 304 -8 852 288 17 13 chr1 6710606 6710842 -275482822 - MIR SINE MIR -25 237 1 1497 168 58 123 chr1 6710902 6711383 -275482281 - LTR7 LTR ERV1 0 450 1 924 74 0 0 chr1 6711548 6711670 -275481994 - L1PA8 LINE L1 -1 6171 6050 1764 159 35 3 chr1 6712000 6712290 -275481374 - AluJo SINE Alu -13 299 1 270 138 0 0 chr1 6712324 6712382 -275481282 + (TA)n Simple_repeat Simple_repeat 1 58 0 1730 159 0 4 chr1 6712390 6712654 -275481010 - AluJb SINE Alu -49 263 1 27 29 0 0 chr1 6712654 6712688 -275480976 + AT_rich Low_complexity Low_complexity 1 34 0 2316 47 54 0 chr1 6713225 6713504 -275480160 + AluY SINE Alu 1 294 -17 1800 123 38 131 chr1 6713622 6713989 -275479675 + MER1B DNA MER1_type 1 333 -4 244 336 79 14 chr1 6715236 6715361 -275478303 + MIR SINE MIR 33 161 -61 180 298 35 114 chr1 6715394 6715489 -275478175 + MIR SINE MIR 28 129 -133 2139 111 0 57 chr1 6715489 6715804 -275477860 - AluSg SINE Alu -13 297 1 180 298 35 114 chr1 6715804 6715963 -275477701 + MIR SINE MIR 129 262 0 766 156 0 47 chr1 6716023 6716151 -275477513 + AluJo/FLAM SINE Alu 11 132 -180 1314 79 12 0 chr1 6716151 6716315 -275477349 - AluY SINE Alu -11 300 135 2448 64 0 32 chr1 6716317 6716630 -275477034 - AluY SINE Alu -8 303 1 21 0 0 0 chr1 6716630 6716651 -275477013 + AT_rich Low_complexity Low_complexity 1 21 0 822 234 172 7 chr1 6716702 6716975 -275476689 - LTR36 LTR ERV1 0 611 294 797 157 119 27 chr1 6717009 6717177 -275476487 - LTR36 LTR ERV1 -407 204 16 2167 119 13 3 chr1 6717177 6717479 -275476185 + AluSx SINE Alu 1 305 -7 797 157 119 27 chr1 6717479 6717495 -275476169 - LTR36 LTR ERV1 -595 16 3 628 198 0 0 chr1 6717495 6717596 -275476068 + FRAM SINE Alu 52 152 -24 23 0 0 0 chr1 6717609 6717632 -275476032 + AT_rich Low_complexity Low_complexity 1 23 0 2210 120 0 10 chr1 6717632 6717941 -275475723 + AluSg SINE Alu 1 306 -4 2046 126 7 27 chr1 6718100 6718401 -275475263 + AluSx SINE Alu 1 295 -17 2436 93 0 0 chr1 6718403 6718704 -275474960 + AluSp SINE Alu 1 301 -12 1764 55 0 0 chr1 6720467 6720669 -275472995 - AluY SINE Alu -107 204 3 291 311 198 6 chr1 6720813 6720980 -275472684 + MIR SINE MIR 21 219 -43 309 294 69 0 chr1 6721242 6721344 -275472320 + MIR SINE MIR 88 196 -66 2014 88 55 4 chr1 6721524 6721798 -275471866 - AluSp SINE Alu -15 298 11 229 377 91 32 chr1 6721899 6722273 -275471391 + L2 LINE L2 2417 2812 -502 471 256 64 8 chr1 6722315 6722440 -275471224 + L2 LINE L2 3137 3268 -4 2609 53 0 3 chr1 6723657 6723959 -275469705 + AluY SINE Alu 1 301 -10 888 266 110 30 chr1 6724577 6724939 -275468725 + MLT1I LTR MaLR 3 393 -16 263 170 38 0 chr1 6724939 6724992 -275468672 - Charlie1 DNA MER1_type 0 2761 2707 1699 177 57 45 chr1 6725094 6725487 -275468177 - Charlie1 DNA MER1_type -32 2729 2342 2223 168 134 0 chr1 6725487 6725905 -275467759 - MER101 LTR ERV1 0 474 1 1699 177 57 45 chr1 6725905 6726079 -275467585 - Charlie1 DNA MER1_type -419 2342 1 916 155 88 44 chr1 6726147 6726328 -275467336 - AluJo SINE Alu -123 189 1 467 246 9 0 chr1 6726328 6726438 -275467226 - L1M4 LINE L1 -3318 2828 2718 2361 106 0 3 chr1 6726932 6727235 -275466429 + AluSx SINE Alu 1 302 -10 356 192 0 0 chr1 6727487 6727560 -275466104 - L1ME3A LINE L1 -8 6162 6090 336 287 73 30 chr1 6727681 6727845 -275465819 - MIR SINE MIR -2 260 90 * 454 312 99 14 chr1 6727833 6728054 -275465610 - MIR SINE MIR -11 251 12 1451 204 15 4 chr1 6728398 6728668 -275464996 - AluJb SINE Alu -39 273 1 180 0 0 0 chr1 6729130 6729150 -275464514 + (T)n Simple_repeat Simple_repeat 1 20 0 917 121 27 0 chr1 6730959 6731108 -275462556 + L1MB4 LINE L1 6022 6174 -6 25 0 0 0 chr1 6731108 6731133 -275462531 + AT_rich Low_complexity Low_complexity 1 25 0 1822 174 14 0 chr1 6732365 6732641 -275461023 + AluJo SINE Alu 1 280 -32 248 281 23 86 chr1 6733070 6733198 -275460466 + MIR3 SINE MIR 50 169 -39 244 340 21 7 chr1 6733524 6733658 -275460006 + MIR SINE MIR 20 156 -64 1918 149 3 17 chr1 6733719 6734021 -275459643 + AluJo SINE Alu 3 300 -12 2186 89 62 7 chr1 6734130 6734422 -275459242 - AluSp SINE Alu -5 308 1 1816 158 0 17 chr1 6734624 6734916 -275458748 - AluJo SINE Alu -25 287 1 476 230 197 0 chr1 6734926 6735113 -275458551 + Charlie8 DNA MER1_type 40 286 -2131 1764 176 10 26 chr1 6735591 6735904 -275457760 + AluJb SINE Alu 1 308 -4 1106 156 6 0 chr1 6736574 6736734 -275456930 - AluJ SINE Alu -18 294 134 2375 103 3 0 chr1 6736734 6737035 -275456629 - AluSx SINE Alu -10 302 1 1411 200 27 21 chr1 6737482 6737812 -275455852 + L1MD3 LINE L1 7658 7989 -6 328 306 56 9 chr1 6737813 6737921 -275455743 - MIR3 SINE MIR -20 188 76 379 106 0 26 chr1 6738011 6738088 -275455576 - FLAM SINE Alu -3 130 68 1927 117 7 4 chr1 6738088 6738361 -275455303 - AluSq SINE Alu 0 313 40 2217 144 0 0 chr1 6739179 6739491 -275454173 + AluSx SINE Alu 1 312 0 2136 96 43 3 chr1 6739495 6739777 -275453887 + AluY SINE Alu 2 294 -17 2375 73 21 0 chr1 6739778 6740064 -275453600 + AluY SINE Alu 1 292 -19 204 40 0 0 chr1 6740095 6740120 -275453544 + (CAAAT)n Simple_repeat Simple_repeat 2 26 0 1935 76 0 20 chr1 6741106 6741357 -275452307 + AluY SINE Alu 51 296 -15 2303 81 0 11 chr1 6741736 6742086 -275451578 - AluSq SINE Alu 0 347 1 2338 122 0 0 chr1 6742098 6742409 -275451255 - AluSx SINE Alu -1 311 1 754 191 0 0 chr1 6742582 6742713 -275450951 + FLAM_C SINE Alu 3 133 0 2315 85 7 10 chr1 6742876 6743181 -275450483 + AluY SINE Alu 1 304 -7 2281 92 0 46 chr1 6744612 6744937 -275448727 + AluSx SINE Alu 1 310 -2 1821 178 3 3 chr1 6745949 6746241 -275447423 + AluJo SINE Alu 5 296 -16 2610 66 3 0 chr1 6746776 6747081 -275446583 + AluY SINE Alu 1 306 -5 245 277 54 31 chr1 6747323 6747453 -275446211 + MIR SINE MIR 16 148 -60 611 143 41 0 chr1 6748290 6748388 -275445276 - LTR12 LTR ERV1 0 714 613 342 212 35 0 chr1 6748388 6748473 -275445191 - LTR30 LTR ERV1 -79 643 556 1325 82 11 149 chr1 6748474 6748742 -275444922 - LTR12 LTR ERV1 -429 285 55 273 146 0 21 chr1 6748742 6748790 -275444874 - LTR12 LTR ERV1 -596 118 72 248 250 0 0 chr1 6748798 6748850 -275444814 - LTR30 LTR ERV1 -670 52 1 2149 102 0 0 chr1 6748850 6749124 -275444540 + AluSq SINE Alu 31 304 -9 1145 114 0 148 chr1 6749133 6749369 -275444295 + AluJb SINE Alu 87 287 -25 403 271 37 0 chr1 6750181 6750288 -275443376 + L1MA9 LINE L1 6180 6290 -22 191 345 244 16 chr1 6750343 6750589 -275443075 + L3 LINE CR1 520 821 -756 928 270 47 58 chr1 6750685 6750858 -275442806 - L2 LINE L2 -1 3312 3139 2289 105 3 0 chr1 6750858 6751152 -275442512 + AluSx SINE Alu 1 295 -17 928 270 47 58 chr1 6751152 6751224 -275442440 - L2 LINE L2 -174 3139 3068 2567 54 3 13 chr1 6751224 6751538 -275442126 - AluY SINE Alu 0 311 1 2075 127 3 7 chr1 6751544 6751836 -275441828 - AluSq SINE Alu -22 291 1 928 270 47 58 chr1 6751836 6752067 -275441597 - L2 LINE L2 -250 3063 2833 280 301 10 10 chr1 6752099 6752202 -275441462 + L3 LINE CR1 1273 1375 -202 492 258 31 25 chr1 6752664 6752823 -275440841 - HAL1 LINE L1 -2 2505 2346 598 293 55 21 chr1 6752865 6753155 -275440509 - HAL1 LINE L1 -328 2179 1880 851 153 82 0 chr1 6753162 6753332 -275440332 + Tigger1 DNA MER2_type 1744 1927 -491 2467 56 0 3 chr1 6753369 6753656 -275440008 + AluY SINE Alu 1 286 -25 444 239 96 117 chr1 6753725 6754286 -275439378 - MLT1H1 LTR MaLR -1 548 1 1536 171 0 113 chr1 6754389 6754717 -275438947 - AluJb SINE Alu -21 291 1 1029 239 97 15 chr1 6754717 6755191 -275438473 + MER114 LTR ERV 2 578 -70 2430 96 0 0 chr1 6755191 6755492 -275438172 - AluSg SINE Alu -9 301 1 1849 136 54 4 chr1 6755494 6755773 -275437891 - AluSx SINE Alu -19 293 1 2433 63 0 78 chr1 6756217 6756550 -275437114 + AluSc SINE Alu 1 307 -2 1518 112 0 40 chr1 6758660 6758883 -275434781 + AluSq SINE Alu 87 300 -13 2271 110 3 7 chr1 6760413 6760722 -275432942 - AluSx SINE Alu -4 308 1 1668 210 0 0 chr1 6760724 6761019 -275432645 - AluJo SINE Alu -6 306 12 1587 152 86 4 chr1 6761041 6761310 -275432354 - AluJb SINE Alu -19 293 3 1641 113 18 0 chr1 6761379 6761601 -275432063 + AluSg/x SINE Alu 72 297 -15 2371 60 35 0 chr1 6761845 6762128 -275431536 + AluY SINE Alu 1 293 -18 707 209 0 0 chr1 6762167 6762296 -275431368 + AluSg/x SINE Alu 147 275 -37 2102 145 3 0 chr1 6762558 6762854 -275430810 + AluJb SINE Alu 1 297 -15 2454 84 0 3 chr1 6762858 6763157 -275430507 + AluSx SINE Alu 1 298 -14 232 247 39 26 chr1 6763173 6763250 -275430414 + MER5A DNA MER1_type 111 188 -1 2414 92 10 0 chr1 6763472 6763776 -275429888 - AluSc SINE Alu -2 307 1 340 191 16 0 chr1 6763861 6763924 -275429740 - Tigger5 DNA MER2_type 0 2323 2260 2251 96 23 13 chr1 6763931 6764233 -275429431 + AluSq SINE Alu 1 305 -8 993 181 54 15 chr1 6764233 6764437 -275429227 - AluJb SINE Alu -97 215 4 318 231 87 19 chr1 6764726 6764817 -275428847 - MER5B DNA MER1_type -21 157 60 234 252 192 20 chr1 6764817 6764968 -275428696 + MER5B DNA MER1_type 2 178 0 520 310 7 0 chr1 6765890 6766032 -275427632 - Charlie8 DNA MER1_type -2197 220 78 2252 102 10 20 chr1 6766880 6767185 -275426479 + AluSx SINE Alu 1 302 -10 1962 76 0 0 chr1 6767199 6767435 -275426229 + AluY SINE Alu 56 291 -20 1063 266 151 75 chr1 6767712 6767739 -275425925 + L2 LINE L2 1774 1798 -1515 2550 57 3 0 chr1 6767739 6768036 -275425628 + AluY SINE Alu 1 298 -13 1063 266 151 75 chr1 6768036 6768623 -275425041 + L2 LINE L2 1798 2339 -974 793 173 0 0 chr1 6768623 6768756 -275424908 - FLAM_C SINE Alu 0 133 1 1063 266 151 75 chr1 6768756 6769348 -275424316 + L2 LINE L2 2339 3085 -228 658 157 50 25 chr1 6769655 6769776 -275423888 + FRAM SINE Alu 38 161 -15 377 270 80 58 chr1 6769776 6769876 -275423788 - L1ME LINE L1 -3775 2869 2773 246 32 0 0 chr1 6769876 6769907 -275423757 + (TG)n Simple_repeat Simple_repeat 2 32 0 377 270 80 58 chr1 6769907 6769922 -275423742 - L1ME LINE L1 -3871 2773 2760 2237 97 35 0 chr1 6769922 6770210 -275423454 - AluSq SINE Alu -15 298 1 377 270 80 58 chr1 6770210 6770230 -275423434 - L1ME LINE L1 -3884 2760 2730 226 293 61 0 chr1 6770327 6770426 -275423238 - L1ME LINE L1 -4832 1710 1606 1762 112 73 15 chr1 6770505 6770764 -275422900 - AluSq SINE Alu -39 274 1 249 187 227 53 chr1 6770767 6770842 -275422822 - L1ME LINE L1 -5977 657 570 506 317 43 0 chr1 6771428 6771589 -275422075 + MIR SINE MIR 92 259 -3 2341 102 0 7 chr1 6771682 6771985 -275421679 + AluSx SINE Alu 1 301 -11 738 128 0 38 chr1 6772502 6772635 -275421029 + FLAM_C SINE Alu 16 143 0 354 246 154 51 chr1 6773322 6773497 -275420167 - Charlie8 DNA MER1_type -2137 280 88 2053 154 0 3 chr1 6774164 6774463 -275419201 + AluJb SINE Alu 1 298 -14 217 208 21 0 chr1 6774613 6774661 -275419003 - L2 LINE L2 -1 3271 3223 24 0 0 0 chr1 6775729 6775753 -275417911 + AT_rich Low_complexity Low_complexity 1 24 0 2107 113 0 27 chr1 6777387 6777687 -275415977 - AluSx SINE Alu -20 292 1 1329 175 15 105 chr1 6779086 6779411 -275414253 - AluJb SINE Alu -16 296 1 1967 108 72 4 chr1 6779413 6779691 -275413973 - AluSq SINE Alu -16 297 1 1316 157 120 25 chr1 6779694 6779968 -275413696 - AluSq SINE Alu -13 300 1 1614 185 3 39 chr1 6779997 6780305 -275413359 + AluJo SINE Alu 1 297 -15 768 191 0 0 chr1 6780305 6780436 -275413228 + FLAM_C SINE Alu 1 131 -2 2271 95 14 3 chr1 6780444 6780740 -275412924 + AluSx SINE Alu 3 301 -11 1827 109 4 0 chr1 6782156 6782394 -275411270 - AluSq SINE Alu -74 239 1 247 360 198 7 chr1 6783056 6783334 -275410330 - L2 LINE L2 -17 3296 2966 445 290 172 56 chr1 6783475 6783649 -275410015 - L2 LINE L2 -728 2586 2434 1987 134 3 0 chr1 6783649 6783941 -275409723 + AluSx SINE Alu 1 293 -19 445 290 172 56 chr1 6783941 6784284 -275409380 - L2 LINE L2 -880 2434 1952 363 230 32 97 chr1 6784357 6784448 -275409216 + L1ME3A LINE L1 5624 5719 -459 2204 90 0 26 chr1 6784448 6784758 -275408906 - AluSx SINE Alu -10 302 1 363 230 32 97 chr1 6784758 6784883 -275408781 + L1ME3A LINE L1 5719 5826 -352 362 239 91 77 chr1 6784887 6784990 -275408674 + L1ME3A LINE L1 5950 6050 -120 1968 124 7 7 chr1 6784990 6785288 -275408376 - AluJo SINE Alu -14 298 1 362 239 91 77 chr1 6785288 6785393 -275408271 + L1ME3A LINE L1 6050 6161 -9 212 306 45 45 chr1 6785406 6785517 -275408147 - L2 LINE L2 -1480 1834 1724 216 0 0 0 chr1 6785544 6785568 -275408096 + (CCGGG)n Simple_repeat Simple_repeat 3 26 0 24 0 0 0 chr1 6785851 6785875 -275407789 + GC_rich Low_complexity Low_complexity 1 24 0 2116 117 0 10 chr1 6786741 6787049 -275406615 + AluSq SINE Alu 1 305 -8 1868 147 7 7 chr1 6790098 6790264 -275403400 - AluJo SINE Alu -12 300 132 2220 80 6 45 chr1 6790264 6790576 -275403088 - AluSg SINE Alu -10 300 1 1868 147 7 7 chr1 6790576 6790709 -275402955 - AluJo SINE Alu -179 133 1 205 179 0 0 chr1 6791283 6791322 -275402342 + CT-rich Low_complexity Low_complexity 2 40 0 2022 98 42 7 chr1 6791675 6791961 -275401703 + AluSq SINE Alu 1 296 -17 2163 115 0 10 chr1 6792367 6792680 -275400984 + AluSx SINE Alu 1 310 -2 694 163 106 0 chr1 6792757 6792880 -275400784 + AluJo SINE Alu 1 136 -176 1838 148 10 0 chr1 6792881 6793172 -275400492 + AluJb SINE Alu 1 294 -18 490 254 40 20 chr1 6793350 6793512 -275400152 + MIR SINE MIR 12 173 -62 1913 116 33 10 chr1 6793585 6793886 -275399778 + AluSg SINE Alu 1 308 -2 1719 130 69 0 chr1 6793930 6794206 -275399458 + AluSx SINE Alu 1 295 -17 2362 60 3 3 chr1 6794988 6795288 -275398376 + AluSg SINE Alu 2 301 -9 22 80 0 0 chr1 6796084 6796134 -275397530 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 6796167 6796190 -275397474 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 6796547 6796573 -275397091 + GC_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr1 6796707 6796739 -275396925 + GC_rich Low_complexity Low_complexity 1 32 0 217 196 0 89 chr1 6797252 6797364 -275396300 + G-rich Low_complexity Low_complexity 4 105 0 246 210 8 89 chr1 6797803 6797960 -275395704 + G-rich Low_complexity Low_complexity 1 144 0 2471 54 0 0 chr1 6798863 6799160 -275394504 + AluSg SINE Alu 1 297 -13 201 143 0 0 chr1 6799161 6799196 -275394468 + MIR SINE MIR 108 142 -66 198 0 0 0 chr1 6799233 6799255 -275394409 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2187 89 3 0 chr1 6799590 6799883 -275393781 - AluSc SINE Alu -15 294 1 816 78 0 0 chr1 6800024 6800126 -275393538 + AluS SINE Alu 1 102 -210 728 67 0 0 chr1 6800130 6800220 -275393444 + AluSp/q SINE Alu 208 297 -16 844 162 26 26 chr1 6800223 6800414 -275393250 - AluJo SINE Alu -118 194 4 2031 124 10 3 chr1 6800605 6800904 -275392760 - AluSq SINE Alu -10 303 3 2078 85 0 0 chr1 6801170 6801440 -275392224 + AluSc SINE Alu 16 285 -24 2205 91 0 26 chr1 6801960 6802130 -275391534 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 6802130 6802188 -275391476 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1965 114 4 4 chr1 6802188 6802468 -275391196 - AluSc SINE Alu -29 280 1 2205 91 0 26 chr1 6802468 6802605 -275391059 - AluSx SINE Alu -182 130 1 1519 143 85 51 chr1 6802605 6802761 -275390903 - AluJb SINE Alu -9 303 154 2080 82 4 0 chr1 6802761 6803041 -275390623 - AluY SINE Alu 0 311 31 1519 143 85 51 chr1 6803041 6803177 -275390487 - AluJb SINE Alu -158 154 1 2091 128 7 0 chr1 6803450 6803746 -275389918 + AluSg SINE Alu 1 298 -12 1743 157 14 7 chr1 6803764 6804058 -275389606 + AluSx SINE Alu 5 300 -12 1989 128 21 0 chr1 6804179 6804467 -275389197 + AluSx SINE Alu 5 298 -14 1373 133 24 0 chr1 6804630 6804840 -275388824 - AluSg/x SINE Alu -12 300 86 1744 163 0 14 chr1 6804868 6805163 -275388501 + AluJb SINE Alu 1 291 -21 2141 99 3 3 chr1 6805171 6805464 -275388200 + AluSx SINE Alu 1 293 -19 769 124 0 0 chr1 6805650 6805763 -275387901 - AluSg/x SINE Alu -2 310 198 515 133 133 0 chr1 6805765 6805855 -275387809 + AluSc SINE Alu 191 292 -17 548 214 179 29 chr1 6806147 6806287 -275387377 - FRAM SINE Alu -5 161 1 1396 117 120 62 chr1 6806299 6806573 -275387091 - AluSx SINE Alu -12 290 1 30 77 0 0 chr1 6808276 6808341 -275385323 + GC_rich Low_complexity Low_complexity 1 65 0 260 277 0 85 chr1 6810940 6810971 -275382693 - L1ME3A LINE L1 0 6170 6138 1943 149 10 0 chr1 6810971 6811267 -275382397 + AluJb SINE Alu 1 299 -13 260 277 0 85 chr1 6811267 6811365 -275382299 - L1ME3A LINE L1 -32 6138 6052 181 217 22 22 chr1 6812342 6812388 -275381276 - MIR SINE MIR -111 151 106 2361 80 0 3 chr1 6812402 6812713 -275380951 - AluY SINE Alu -1 310 1 201 39 0 0 chr1 6812713 6812739 -275380925 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2026 123 0 0 chr1 6812749 6813026 -275380638 - AluSp SINE Alu -36 277 1 745 197 0 22 chr1 6813027 6813164 -275380500 - AluJo SINE Alu -178 134 1 531 224 133 12 chr1 6814651 6814816 -275378848 + MER58 DNA MER1_type 59 243 -2177 759 130 0 32 chr1 6814855 6814978 -275378686 - AluSg/x SINE Alu -6 306 188 1509 119 5 0 chr1 6814978 6815196 -275378468 - AluSx SINE Alu -93 219 1 229 250 38 25 chr1 6815956 6816036 -275377628 - MIR SINE MIR -107 155 75 488 241 49 12 chr1 6816069 6816231 -275377433 - L2 LINE L2 -290 3023 2856 1639 136 9 99 chr1 6816244 6816567 -275377097 - AluJo SINE Alu -18 294 1 2241 88 0 14 chr1 6816596 6816893 -275376771 - AluY SINE Alu -18 293 1 313 308 14 7 chr1 6817279 6817391 -275376273 + MIR SINE MIR 100 211 -51 749 186 0 0 chr1 6820774 6820892 -275372772 + AluJb SINE Alu 1 118 -194 780 188 0 0 chr1 6821240 6821373 -275372291 - AluSg/x SINE Alu -6 306 174 541 286 129 40 chr1 6825746 6826424 -275367240 + L2 LINE L2 2554 3294 -19 584 251 61 0 chr1 6826931 6827094 -275366570 + MER3 DNA MER1_type 1 126 -83 2020 117 10 10 chr1 6827100 6827232 -275366432 + AluSg SINE Alu 1 132 -178 2221 99 0 16 chr1 6827232 6827546 -275366118 + AluSg SINE Alu 1 309 -1 2020 117 10 10 chr1 6827546 6827713 -275365951 + AluSg SINE Alu 131 300 -10 2265 98 3 0 chr1 6827715 6828021 -275365643 + AluSg SINE Alu 1 307 -3 2113 127 3 3 chr1 6828025 6828333 -275365331 + AluSc SINE Alu 1 308 -1 850 131 0 44 chr1 6828344 6828481 -275365183 + FLAM_C SINE Alu 1 131 -2 1935 141 0 20 chr1 6829634 6829938 -275363726 - AluJb SINE Alu -14 298 1 189 0 0 0 chr1 6832510 6832531 -275361133 + (CAG)n Simple_repeat Simple_repeat 2 22 0 2418 71 0 10 chr1 6833461 6833771 -275359893 - AluSq SINE Alu -6 307 1 2066 84 31 14 chr1 6833774 6834060 -275359604 - AluSx SINE Alu -19 293 3 1865 107 7 15 chr1 6835198 6835320 -275358344 + AluSx SINE Alu 15 136 -172 2325 81 0 7 chr1 6835320 6835628 -275358036 + AluY SINE Alu 1 306 -5 1865 107 7 15 chr1 6835628 6835801 -275357863 + AluSx SINE Alu 136 308 0 272 344 101 12 chr1 6836767 6837014 -275356650 - L2 LINE L2 -174 3098 2830 2924 89 105 7 chr1 6837023 6837351 -275356313 + MER1A DNA MER1_type 37 422 -2280 2396 65 0 3 chr1 6837351 6837661 -275356003 + AluY SINE Alu 1 309 -2 2924 89 105 7 chr1 6837661 6837781 -275355883 + MER1A DNA MER1_type 422 529 0 2090 109 0 3 chr1 6837841 6838134 -275355530 - AluSg SINE Alu -13 297 6 233 413 18 6 chr1 6838147 6838314 -275355350 - L2 LINE L2 -601 2713 2545 1759 155 31 3 chr1 6838758 6839049 -275354615 + AluJo SINE Alu 5 303 -9 1738 137 37 0 chr1 6839497 6839767 -275353897 - AluSx SINE Alu -32 280 1 863 182 77 59 chr1 6840643 6840863 -275352801 - MLT2D LTR ERVL -3 411 188 619 143 33 44 chr1 6841031 6841209 -275352455 + LTR21B LTR ERV1 310 438 0 12744 196 22 39 chr1 6841209 6842831 -275350833 + HERVFH21 LTR ERV1 5 1652 -4877 2319 73 0 19 chr1 6842831 6843146 -275350518 - AluY SINE Alu -2 309 1 12744 196 22 39 chr1 6843146 6843734 -275349930 + HERVFH21 LTR ERV1 1652 2248 -4281 2503 47 3 0 chr1 6843734 6844034 -275349630 - AluY SINE Alu -10 301 1 12744 196 22 39 chr1 6844034 6844420 -275349244 + HERVFH21 LTR ERV1 2248 2639 -3890 2208 74 3 0 chr1 6844420 6844704 -275348960 + AluY SINE Alu 1 285 -26 12744 196 22 39 chr1 6844704 6845593 -275348071 + HERVFH21 LTR ERV1 2639 3357 -3172 805 112 0 0 chr1 6845593 6845709 -275347955 + AluSg/x SINE Alu 193 308 -4 2297 251 17 0 chr1 6845709 6846232 -275347432 + HERVFH21 LTR ERV1 3349 3880 -2649 * 5402 139 13 4 chr1 6846226 6847184 -275346480 + HERVFH21 LTR ERV1 4540 5404 -1196 5045 253 7 16 chr1 6847519 6848730 -275344934 + HERVFH21 LTR ERV1 6553 7751 -648 1828 115 146 6 chr1 6848732 6848846 -275344818 + LTR14B LTR ERVK 1 98 -510 2255 94 0 0 chr1 6848846 6849144 -275344520 + AluY SINE Alu 1 298 -13 1828 115 146 6 chr1 6849144 6849482 -275344182 + LTR14B LTR ERVK 98 607 -1 1756 264 50 23 chr1 6849488 6849584 -275344080 + HERVFH21 LTR ERV1 5932 6024 -505 2076 107 0 13 chr1 6849584 6849884 -275343780 - AluY SINE Alu -15 296 1 1756 264 50 23 chr1 6849884 6850307 -275343357 + HERVFH21 LTR ERV1 6024 6465 -64 4805 144 14 4 chr1 6850344 6851219 -275342445 + HERVFH21 LTR ERV1 4572 5404 -1196 795 260 0 9 chr1 6851554 6851785 -275341879 + HERVFH21 LTR ERV1 6553 6781 -1618 377 128 13 34 chr1 6851886 6851964 -275341700 - Alu SINE Alu -248 52 1 235 178 0 0 chr1 6851938 6851983 -275341681 + MLT2D LTR ERVL 82 126 -288 * 2014 128 0 3 chr1 6851984 6852282 -275341382 + AluSx SINE Alu 1 297 -15 1856 108 3 93 chr1 6852294 6852626 -275341038 + AluSq SINE Alu 1 302 -11 1981 96 14 7 chr1 6852626 6852905 -275340759 + AluSp SINE Alu 1 282 -31 538 175 65 29 chr1 6852905 6853078 -275340586 - LTR21B LTR ERV1 0 438 293 1998 269 25 20 chr1 6853234 6853309 -275340355 - HERVFH21 LTR ERV1 0 6529 6456 2423 49 0 16 chr1 6853309 6853616 -275340048 + AluY SINE Alu 1 302 -9 1998 269 25 20 chr1 6853616 6854038 -275339626 - HERVFH21 LTR ERV1 -73 6456 6026 2076 107 0 13 chr1 6854038 6854338 -275339326 + AluY SINE Alu 1 296 -15 1998 269 25 20 chr1 6854338 6854434 -275339230 - HERVFH21 LTR ERV1 -503 6026 5932 1722 84 18 92 chr1 6854440 6854776 -275338888 - LTR14A LTR ERVK -1 343 54 2223 97 0 0 chr1 6854778 6855076 -275338588 - AluY SINE Alu -13 298 1 2349 52 3 0 chr1 6855123 6855410 -275338254 + AluY SINE Alu 1 288 -23 1565 89 0 0 chr1 6856026 6856228 -275337436 - AluY SINE Alu -9 302 101 1025 138 0 12 chr1 6856228 6856388 -275337276 - AluSx SINE Alu -154 158 1 362 300 10 0 chr1 6856405 6856567 -275337097 + L1MC4 LINE L1 1980 6926 -1139 324 254 20 0 chr1 6856535 6856635 -275337029 - L1MCa LINE L1 -1333 6989 1996 * 2196 103 3 0 chr1 6856676 6856978 -275336686 - AluSx SINE Alu -9 303 1 319 307 42 85 chr1 6856978 6857081 -275336583 - L1MC4 LINE L1 -1982 5826 5733 661 186 65 16 chr1 6857081 6857205 -275336459 - FLAM_A SINE Alu -3 130 1 319 307 42 85 chr1 6857205 6857290 -275336374 - L1MC4 LINE L1 -2075 5733 5646 1449 130 43 94 chr1 6857398 6857727 -275335937 - AluSx SINE Alu 0 314 1 1382 210 4 0 chr1 6857743 6857995 -275335669 - AluJb SINE Alu -59 253 1 2222 92 3 0 chr1 6858042 6858334 -275335330 + AluSp SINE Alu 1 293 -20 3136 163 52 69 chr1 6858357 6858543 -275335121 - L1MB4 LINE L1 -173 6007 5819 1632 178 13 16 chr1 6858543 6858847 -275334817 + AluJb SINE Alu 1 303 -9 3136 163 52 69 chr1 6858847 6859333 -275334331 - L1MB4 LINE L1 -361 5819 5326 2015 123 38 0 chr1 6859333 6859626 -275334038 - AluSx SINE Alu -8 304 1 2054 99 43 16 chr1 6859632 6859936 -275333728 - AluSq SINE Alu -1 312 1 3136 163 52 69 chr1 6859936 6860262 -275333402 - L1MB4 LINE L1 -859 5321 5010 323 58 0 0 chr1 6860315 6860367 -275333297 - Alu SINE Alu 0 300 249 910 67 0 8 chr1 6860367 6860486 -275333178 - AluYb8 SINE Alu -200 118 1 898 230 118 0 chr1 6860487 6860757 -275332907 - L1MB4 LINE L1 -1118 5028 4727 * 2378 190 61 7 chr1 6860745 6861304 -275332360 - L1 LINE L1 -791 5355 4767 636 203 61 54 chr1 6861307 6861455 -275332209 - FRAM SINE Alu -25 151 3 21 0 0 0 chr1 6861475 6861496 -275332168 + AT_rich Low_complexity Low_complexity 1 21 0 1387 200 46 7 chr1 6861496 6861781 -275331883 - AluJo SINE Alu -16 296 1 816 173 26 108 chr1 6861781 6861945 -275331719 - AluJo SINE Alu -16 296 120 269 0 56 0 chr1 6861945 6861981 -275331683 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2239 71 0 0 chr1 6861981 6862262 -275331402 - AluY SINE Alu -30 281 1 816 173 26 108 chr1 6862262 6862327 -275331337 - AluJo SINE Alu -190 122 85 2276 94 0 3 chr1 6862383 6862682 -275330982 - AluSq SINE Alu -15 298 1 1362 263 29 61 chr1 6862895 6863219 -275330445 - L1MC4 LINE L1 -1110 6932 6628 2079 130 0 19 chr1 6863219 6863535 -275330129 + AluSx SINE Alu 3 312 0 1362 263 29 61 chr1 6863535 6863701 -275329963 - L1MC4 LINE L1 -1414 6628 6458 516 238 94 59 chr1 6863977 6864140 -275329524 + MIR SINE MIR 15 188 -74 2337 85 3 0 chr1 6864140 6864445 -275329219 + AluSp SINE Alu 1 306 -7 516 238 94 59 chr1 6864445 6864483 -275329181 + MIR SINE MIR 188 223 -39 364 331 52 7 chr1 6864509 6864645 -275329019 + L2 LINE L2 3169 3310 -3 1860 167 0 7 chr1 6865131 6865436 -275328228 - AluSx SINE Alu -9 303 1 682 292 82 0 chr1 6866411 6866630 -275327034 - MIR SINE MIR -24 238 2 2196 100 0 0 chr1 6866814 6867113 -275326551 + AluY SINE Alu 1 299 -12 366 263 153 43 chr1 6867257 6867466 -275326198 - MIR SINE MIR -10 252 21 351 324 75 6 chr1 6867486 6867659 -275326005 - MIR SINE MIR -18 244 60 2150 101 3 3 chr1 6867849 6868155 -275325509 - AluSq SINE Alu -7 306 1 954 179 0 42 chr1 6868180 6868370 -275325294 - AluSg/x SINE Alu -9 301 120 2103 138 0 0 chr1 6868371 6868683 -275324981 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 6868688 6868709 -275324955 + AT_rich Low_complexity Low_complexity 1 21 0 2162 107 3 0 chr1 6868709 6869018 -275324646 - AluSg SINE Alu 0 310 1 381 313 143 27 chr1 6869507 6870025 -275323639 + L2 LINE L2 2091 2668 -646 2132 117 3 0 chr1 6870373 6870673 -275322991 - AluSg SINE Alu -7 303 3 228 35 0 0 chr1 6870678 6870707 -275322957 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1534 128 8 0 chr1 6870726 6870960 -275322704 - AluSx SINE Alu -76 236 1 2173 98 7 3 chr1 6871058 6871363 -275322301 - AluSx SINE Alu -6 306 1 772 191 76 25 chr1 6873025 6873182 -275320482 + FRAM SINE Alu 1 165 -11 2334 77 0 3 chr1 6873288 6873588 -275320076 + AluY SINE Alu 1 299 -12 2349 78 3 0 chr1 6874723 6875029 -275318635 - AluSq SINE Alu -6 307 1 1983 106 0 4 chr1 6875140 6875415 -275318249 - AluSg SINE Alu -5 305 32 2448 66 0 0 chr1 6875421 6875723 -275317941 - AluSg SINE Alu -8 302 1 2011 131 13 0 chr1 6875751 6876057 -275317607 - AluSx SINE Alu 0 312 3 1254 86 6 17 chr1 6876089 6876263 -275317401 - AluSg SINE Alu -138 172 1 302 305 76 8 chr1 6876295 6876426 -275317238 + MIR SINE MIR 11 150 -112 319 263 202 0 chr1 6876904 6877018 -275316646 - L1ME4a LINE L1 -215 5906 5770 1944 126 23 19 chr1 6877137 6877447 -275316217 - AluSx SINE Alu -1 311 1 835 141 0 8 chr1 6877687 6877815 -275315849 + FLAM_C SINE Alu 13 139 -4 2320 68 3 0 chr1 6879186 6879480 -275314184 + AluY SINE Alu 2 296 -15 182 274 27 27 chr1 6879553 6879626 -275314038 + MIR3 SINE MIR 124 196 -12 2310 84 7 0 chr1 6879738 6880048 -275313616 - AluSp SINE Alu -1 312 1 455 172 0 0 chr1 6880118 6880182 -275313482 + T-rich Low_complexity Low_complexity 1 64 0 25 0 0 0 chr1 6880639 6880664 -275313000 + GC_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr1 6881656 6881696 -275311968 + GC_rich Low_complexity Low_complexity 1 40 0 189 246 0 0 chr1 6881726 6881791 -275311873 + C-rich Low_complexity Low_complexity 1 65 0 624 190 114 16 chr1 7081988 7082172 -275111492 - HAL1 LINE L1 -651 1856 1655 647 293 111 91 chr1 7082196 7082582 -275111082 + HAL1 LINE L1 142 535 -1972 232 253 41 75 chr1 7082586 7082732 -275110932 - HAL1 LINE L1 -379 2128 1988 253 253 23 11 chr1 7082766 7082853 -275110811 - MIR SINE MIR -2 260 173 198 0 0 0 chr1 7083094 7083116 -275110548 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 888 117 0 0 chr1 7083117 7083237 -275110427 - AluSq/x SINE Alu -192 120 1 2238 124 0 0 chr1 7083628 7083935 -275109729 + AluSx SINE Alu 1 307 -5 197 281 18 0 chr1 7084076 7084133 -275109531 + L2 LINE L2 3254 3311 -2 2041 140 27 0 chr1 7084279 7084572 -275109092 + AluSx SINE Alu 1 301 -11 385 242 73 16 chr1 7084822 7084946 -275108718 + L2 LINE L2 3182 3312 -1 222 188 0 42 chr1 7085062 7085110 -275108554 - L2 LINE L2 -93 3220 3175 1389 106 0 0 chr1 7085121 7085300 -275108364 + AluSx SINE Alu 1 179 -133 362 289 15 55 chr1 7085329 7085530 -275108134 - MIR SINE MIR -50 212 20 1986 116 0 58 chr1 7085814 7086124 -275107540 + AluSx SINE Alu 1 292 -20 762 100 0 0 chr1 7087125 7087225 -275106439 + FRAM SINE Alu 59 158 -18 4719 114 4 4 chr1 7087225 7087934 -275105730 + L1PA16 LINE L1 5470 6178 0 2438 99 3 0 chr1 7088046 7088358 -275105306 + AluSq SINE Alu 1 313 0 623 306 45 27 chr1 7088417 7088753 -275104911 + L1ME LINE L1 5400 5741 -380 489 17 0 0 chr1 7088825 7088883 -275104781 + (TG)n Simple_repeat Simple_repeat 1 58 0 2114 83 7 4 chr1 7088883 7089161 -275104503 - AluSx SINE Alu -33 279 1 2185 111 0 7 chr1 7089357 7089663 -275104001 + AluSx SINE Alu 1 304 -8 691 265 34 0 chr1 7089890 7090094 -275103570 - MIR SINE MIR -51 211 1 2237 124 0 0 chr1 7090199 7090505 -275103159 + AluSx SINE Alu 1 306 -6 1298 129 0 0 chr1 7090505 7090683 -275102981 + AluSg/x SINE Alu 134 311 -1 273 119 0 0 chr1 7090683 7090725 -275102939 + (GGA)n Simple_repeat Simple_repeat 1 42 0 339 259 44 38 chr1 7090975 7091133 -275102531 - L2 LINE L2 -533 2781 2623 2378 86 3 22 chr1 7091255 7091568 -275102096 + AluSp SINE Alu 1 307 -6 2332 101 51 28 chr1 7091653 7092009 -275101655 + THE1B LTR MaLR 1 364 0 2121 136 0 3 chr1 7092273 7092583 -275101081 - AluSx SINE Alu -3 309 1 2132 116 3 0 chr1 7092991 7093284 -275100380 + AluSx SINE Alu 1 294 -18 723 176 57 23 chr1 7093863 7094039 -275099625 + MIR SINE MIR 67 248 -14 1026 128 116 6 chr1 7094176 7094348 -275099316 - AluJb SINE Alu -9 303 113 1127 167 112 73 chr1 7094506 7094793 -275098871 + AluJo SINE Alu 2 299 -3 2018 103 26 36 chr1 7094822 7095124 -275098540 + AluSx SINE Alu 1 299 -13 185 255 0 0 chr1 7095209 7095256 -275098408 - MER5C DNA MER1_type 0 324 278 210 91 0 0 chr1 7095258 7095291 -275098373 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 257 264 16 91 chr1 7095455 7095576 -275098088 - MER5C DNA MER1_type -205 119 8 756 263 43 0 chr1 7096037 7096246 -275097418 + MIR SINE MIR 22 239 -23 2148 110 0 0 chr1 7096246 7096566 -275097098 - AluSx SINE Alu 0 320 1 1827 150 0 41 chr1 7096583 7096783 -275096881 - AluJb SINE Alu -30 282 96 2321 105 0 16 chr1 7096783 7097097 -275096567 - AluSq SINE Alu -4 309 1 1827 150 0 41 chr1 7097097 7097190 -275096474 - AluJb SINE Alu -216 96 1 207 139 0 0 chr1 7097192 7097228 -275096436 + (CTA)n Simple_repeat Simple_repeat 1 36 0 669 200 23 8 chr1 7097511 7097641 -275096023 + AluJo SINE Alu 3 134 -178 2042 145 16 10 chr1 7097733 7098043 -275095621 + AluJb SINE Alu 1 312 0 2290 102 0 7 chr1 7098427 7098732 -275094932 - AluSq SINE Alu -10 303 1 372 312 24 0 chr1 7098748 7098873 -275094791 - L2 LINE L2 -1 3271 3144 2352 100 3 6 chr1 7099033 7099344 -275094320 + AluSp SINE Alu 1 310 -3 574 103 10 10 chr1 7099345 7099442 -275094222 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 24 0 0 0 chr1 7100174 7100198 -275093466 + AT_rich Low_complexity Low_complexity 1 24 0 566 286 171 26 chr1 7100418 7100623 -275093041 + L2 LINE L2 2826 3000 -313 2149 120 0 7 chr1 7100623 7100924 -275092740 + AluSx SINE Alu 1 299 -13 566 286 171 26 chr1 7100924 7101144 -275092520 + L2 LINE L2 3000 3313 0 1960 125 26 26 chr1 7101322 7101626 -275092038 + AluJb SINE Alu 1 304 -8 2246 108 13 0 chr1 7101645 7101952 -275091712 + AluSx SINE Alu 1 311 -1 1947 127 0 0 chr1 7102212 7102471 -275091193 - AluSq SINE Alu -54 259 1 21 0 0 0 chr1 7102488 7102509 -275091155 + AT_rich Low_complexity Low_complexity 1 21 0 1513 170 69 24 chr1 7102822 7103110 -275090554 + AluJo SINE Alu 1 301 -11 575 234 289 7 chr1 7103621 7103925 -275089739 - L2 LINE L2 -3 3310 2921 2192 96 0 17 chr1 7103931 7104223 -275089441 - AluSq SINE Alu -4 309 23 528 229 33 26 chr1 7104302 7104455 -275089209 + L1MB8 LINE L1 6022 6175 -3 2006 141 0 34 chr1 7104466 7104601 -275089063 + AluJb SINE Alu 1 139 -173 2360 94 0 0 chr1 7104601 7104898 -275088766 + AluSx SINE Alu 1 297 -15 2006 141 0 34 chr1 7104898 7105082 -275088582 + AluJb SINE Alu 139 309 -3 2246 81 3 27 chr1 7105082 7105378 -275088286 + AluSx SINE Alu 1 289 -23 21 0 0 0 chr1 7105379 7105400 -275088264 + AT_rich Low_complexity Low_complexity 1 21 0 1146 259 68 28 chr1 7105444 7105945 -275087719 - L2 LINE L2 -467 2847 2327 952 203 48 84 chr1 7105945 7106324 -275087340 + MLT1B LTR MaLR 1 365 -25 261 0 0 0 chr1 7106330 7106359 -275087305 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2067 123 4 0 chr1 7106361 7106637 -275087027 - AluSg SINE Alu -33 277 1 2158 129 0 3 chr1 7106687 7106997 -275086667 + AluSx SINE Alu 1 309 -3 6262 40 3 0 chr1 7107526 7108298 -275085366 + L1PA5 LINE L1 5409 6154 0 1311 59 24 0 chr1 7108576 7108746 -275084918 - L1MA3 LINE L1 0 6305 6132 709 93 19 0 chr1 7108807 7108914 -275084750 - L1MA2 LINE L1 -159 6145 6037 2028 116 26 0 chr1 7110485 7110787 -275082877 - AluSx SINE Alu -2 310 1 2498 73 3 0 chr1 7111320 7111623 -275082041 - AluSp SINE Alu -9 304 1 2191 59 0 0 chr1 7111908 7112162 -275081502 - AluY SINE Alu -14 297 44 1879 126 7 15 chr1 7112195 7112464 -275081200 + AluSx SINE Alu 1 267 -45 936 194 0 6 chr1 7112546 7112711 -275080953 - FAM SINE Alu -11 164 1 741 177 8 0 chr1 7112914 7113038 -275080626 + L1MC3 LINE L1 7241 7365 -420 2128 95 0 0 chr1 7113038 7113300 -275080364 + AluSc SINE Alu 1 262 -47 346 323 35 25 chr1 7113307 7113508 -275080156 + L1MEd LINE L1 43 245 -5874 1262 176 38 0 chr1 7113508 7113718 -275079946 + MER58A DNA MER1_type 1 218 -6 883 259 119 99 chr1 7113752 7113959 -275079705 + L1MEd LINE L1 269 471 -5648 2174 114 0 3 chr1 7113959 7114249 -275079415 + AluSq SINE Alu 1 289 -24 405 0 0 0 chr1 7114250 7114295 -275079369 + (GA)n Simple_repeat Simple_repeat 2 46 0 883 259 119 99 chr1 7114295 7114602 -275079062 + L1MEd LINE L1 471 771 -5348 1151 115 8 111 chr1 7114602 7114836 -275078828 + L1PB4 LINE L1 5946 6155 -1 883 259 119 99 chr1 7114836 7115195 -275078469 + L1MEd LINE L1 771 1162 -4957 1561 95 0 14 chr1 7115202 7115413 -275078251 + AluSc SINE Alu 102 309 0 647 261 75 37 chr1 7115759 7115956 -275077708 + L1MEd LINE L1 2114 2302 -3827 1854 186 0 3 chr1 7115956 7116291 -275077373 + AluSx SINE Alu 1 312 0 647 261 75 37 chr1 7116291 7116468 -275077196 + L1MEd LINE L1 2302 2502 -3627 1490 270 57 17 chr1 7116516 7116934 -275076730 + LTR16A LTR ERVL 16 450 0 247 283 52 98 chr1 7117348 7117521 -275076143 + MLT1K LTR MaLR 32 196 -392 701 212 117 35 chr1 7117615 7117846 -275075818 + MLT1K LTR MaLR 337 586 -2 600 150 10 0 chr1 7117896 7117996 -275075668 - L1PA13 LINE L1 -11 6152 6052 616 211 226 5 chr1 7118038 7118237 -275075427 + MIR SINE MIR 12 254 -8 244 278 112 58 chr1 7118238 7118437 -275075227 - L1ME LINE L1 -255 5866 5650 2106 123 14 0 chr1 7118437 7118730 -275074934 - AluSx SINE Alu -15 297 1 244 278 112 58 chr1 7118730 7118771 -275074893 - L1ME LINE L1 -471 5650 5613 207 97 0 0 chr1 7119108 7119139 -275074525 + L2 LINE L2 3239 3269 -3 212 0 0 108 chr1 7119378 7119393 -275074271 + (A)n Simple_repeat Simple_repeat 1 16 -17 2262 119 7 0 chr1 7119393 7119703 -275073961 + AluSx SINE Alu 1 312 0 212 0 0 108 chr1 7119703 7119724 -275073940 + (A)n Simple_repeat Simple_repeat 16 33 0 264 273 43 117 chr1 7120369 7120519 -275073145 + L2 LINE L2 2379 2500 -814 2079 127 0 29 chr1 7120519 7120833 -275072831 - AluJb SINE Alu -7 305 1 264 273 43 117 chr1 7120833 7120964 -275072700 + L2 LINE L2 2500 2639 -675 * 693 306 58 42 chr1 7120963 7121226 -275072438 + L2 LINE L2 2879 3153 -160 3222 66 50 0 chr1 7121226 7121266 -275072398 - MLT2A1 LTR ERVL 0 444 407 336 48 0 0 chr1 7121266 7121308 -275072356 + (TA)n Simple_repeat Simple_repeat 2 43 0 3222 66 50 0 chr1 7121308 7121690 -275071974 - MLT2A1 LTR ERVL -37 407 1 693 306 58 42 chr1 7121690 7121854 -275071810 + L2 LINE L2 3153 3313 0 285 328 29 23 chr1 7121902 7122076 -275071588 + L2 LINE L2 252 426 -2888 1530 143 18 94 chr1 7122245 7122573 -275071091 + AluJo SINE Alu 1 303 -9 2046 151 0 0 chr1 7122699 7123003 -275070661 - AluJb SINE Alu -8 304 1 2015 156 0 3 chr1 7123317 7123618 -275070046 + AluSx SINE Alu 1 300 -12 2312 86 3 0 chr1 7124275 7124565 -275069099 - AluSq SINE Alu -22 291 1 423 249 217 37 chr1 7125178 7125191 -275068473 - MIR SINE MIR 0 262 253 2077 139 0 0 chr1 7125191 7125492 -275068172 + AluSx SINE Alu 1 301 -11 423 249 217 37 chr1 7125492 7125695 -275067969 - MIR SINE MIR -9 253 7 180 0 0 0 chr1 7125963 7125983 -275067681 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2362 98 0 3 chr1 7126166 7126472 -275067192 + AluSq SINE Alu 1 305 -8 2153 129 7 0 chr1 7126806 7127146 -275066518 + AluSp SINE Alu 1 313 0 2472 58 0 0 chr1 7127306 7127599 -275066065 + AluSc SINE Alu 3 295 -14 234 0 0 0 chr1 7127626 7127652 -275066012 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr1 7127970 7128008 -275065656 + AT_rich Low_complexity Low_complexity 1 38 0 260 332 0 37 chr1 7130306 7130493 -275063171 + (TCCCG)n Simple_repeat Simple_repeat 1 180 0 * 291 386 0 0 chr1 7130390 7130566 -275063098 + (CACCG)n Simple_repeat Simple_repeat 3 178 0 186 103 0 0 chr1 7131061 7131090 -275062574 + (CGG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr1 7131292 7131316 -275062348 + GC_rich Low_complexity Low_complexity 1 24 0 230 238 181 29 chr1 7132827 7132932 -275060732 + L2 LINE L2 3190 3310 -3 1858 148 3 3 chr1 7133813 7134118 -275059546 + AluJb SINE Alu 1 305 -7 600 284 140 27 chr1 7134297 7134589 -275059075 + L2 LINE L2 2989 3313 0 270 317 36 3 chr1 7134601 7134724 -275058940 + MIR SINE MIR 6 140 -68 412 211 128 51 chr1 7134853 7135009 -275058655 + MIR SINE MIR 95 262 0 797 249 86 20 chr1 7135492 7135737 -275057927 + MIR SINE MIR 2 262 0 2086 103 31 0 chr1 7136547 7136839 -275056825 + AluSp SINE Alu 1 301 -12 192 40 0 0 chr1 7136843 7136868 -275056796 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 265 306 174 15 chr1 7138378 7138574 -275055090 - L2 LINE L2 -898 2416 2190 28 0 0 0 chr1 7138999 7139027 -275054637 + GC_rich Low_complexity Low_complexity 1 28 0 412 188 188 62 chr1 7140318 7140446 -275053218 - L2 LINE L2 -2 3270 3127 367 309 216 10 chr1 7146310 7146504 -275047160 + MIR SINE MIR 17 250 -12 329 309 147 16 chr1 7146914 7147105 -275046559 - L2 LINE L2 -550 2764 2549 1926 100 0 45 chr1 7147762 7148071 -275045593 - AluSp SINE Alu -18 295 1 196 255 0 21 chr1 7148097 7148144 -275045520 + MIR SINE MIR 101 146 -62 2078 101 14 0 chr1 7148284 7148581 -275045083 - AluSx SINE Alu -11 301 1 2089 106 0 3 chr1 7148764 7149057 -275044607 + AluSq SINE Alu 1 292 -21 424 204 204 0 chr1 7149314 7149451 -275044213 - L1MD2 LINE L1 -1 6358 6194 2283 82 7 3 chr1 7149588 7149894 -275043770 + AluSp SINE Alu 1 307 -6 360 0 0 0 chr1 7149909 7149949 -275043715 + (GA)n Simple_repeat Simple_repeat 2 41 0 2261 81 0 3 chr1 7150089 7150386 -275043278 + AluSg SINE Alu 1 296 -14 2164 118 7 0 chr1 7151165 7151470 -275042194 + AluSx SINE Alu 1 307 -5 1854 91 84 0 chr1 7151470 7151744 -275041920 + AluSg1 SINE Alu 1 297 -12 236 29 0 29 chr1 7151744 7151778 -275041886 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 2164 103 7 0 chr1 7154325 7154627 -275039037 + AluSx SINE Alu 1 304 -8 314 308 170 11 chr1 7155022 7155204 -275038460 + HAL1 LINE L1 820 1030 -1477 2030 121 14 0 chr1 7155204 7155501 -275038163 + AluSg SINE Alu 1 301 -9 1957 106 3 20 chr1 7155512 7155804 -275037860 + AluSc SINE Alu 9 295 -14 1762 79 64 19 chr1 7155808 7156109 -275037555 - AluSg SINE Alu 0 313 1 574 263 75 94 chr1 7156185 7156502 -275037162 + HAL1 LINE L1 1249 1557 -950 2116 114 0 13 chr1 7156502 7156819 -275036845 + AluSq SINE Alu 1 313 0 574 263 75 94 chr1 7156819 7156927 -275036737 + HAL1 LINE L1 1557 1666 -841 1914 129 0 10 chr1 7157064 7157359 -275036305 + AluSx SINE Alu 16 307 -5 22 0 0 0 chr1 7157420 7157442 -275036222 + AT_rich Low_complexity Low_complexity 1 22 0 716 101 0 0 chr1 7157442 7157541 -275036123 - L1MA2 LINE L1 0 6304 6206 22 56 0 0 chr1 7157571 7157607 -275036057 + AT_rich Low_complexity Low_complexity 1 36 0 1636 171 36 13 chr1 7157758 7158063 -275035601 + AluJb SINE Alu 1 312 0 1589 174 62 62 chr1 7158064 7158222 -275035442 + MSTD LTR MaLR 40 197 -199 2002 121 0 0 chr1 7158222 7158524 -275035140 - AluSx SINE Alu 0 302 1 1589 174 62 62 chr1 7158524 7158721 -275034943 + MSTD LTR MaLR 196 396 0 306 248 4 111 chr1 7158723 7158833 -275034831 + L1MEd LINE L1 895 970 -5149 2015 146 0 3 chr1 7158833 7159142 -275034522 + AluSx SINE Alu 1 308 -4 306 248 4 111 chr1 7159142 7159257 -275034407 + L1MEd LINE L1 970 1096 -5023 1641 98 43 35 chr1 7159257 7159513 -275034151 - MSTB1 LTR MaLR 0 432 175 2344 103 0 0 chr1 7159514 7159826 -275033838 + AluSx SINE Alu 1 312 0 711 173 43 7 chr1 7159834 7159973 -275033691 + L1MB5 LINE L1 5652 5795 -379 987 231 37 26 chr1 7159984 7160252 -275033412 + L1MB5 LINE L1 5904 6174 0 868 261 46 79 chr1 7160250 7160361 -275033303 + L1M4 LINE L1 3515 3628 -2518 * 2153 153 67 20 chr1 7160361 7160765 -275032899 + MSTB LTR MaLR 2 424 -2 868 261 46 79 chr1 7160765 7160792 -275032872 + L1M4 LINE L1 3628 3654 -2492 2182 88 0 3 chr1 7160792 7161089 -275032575 + AluY SINE Alu 1 296 -15 868 261 46 79 chr1 7161089 7161297 -275032367 + L1M4 LINE L1 3654 3844 -2302 2415 56 0 3 chr1 7161297 7161599 -275032065 + AluY SINE Alu 1 301 -10 868 261 46 79 chr1 7161599 7161732 -275031932 + L1M4 LINE L1 3844 3980 -2166 306 0 0 0 chr1 7161737 7161771 -275031893 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 305 167 0 0 chr1 7161774 7161828 -275031836 - Alu SINE Alu -5 297 244 599 178 24 21 chr1 7161847 7161988 -275031676 + MER34B LTR ERV1 1 142 -400 351 197 0 0 chr1 7161987 7162053 -275031611 + AluJ/FRAM SINE Alu 233 298 -4 * 752 211 3 6 chr1 7162128 7162407 -275031257 + GA-rich Low_complexity Low_complexity 1 278 0 223 70 23 23 chr1 7162429 7162472 -275031192 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2051 120 0 7 chr1 7162579 7162871 -275030793 + AluSx SINE Alu 12 301 -11 376 143 32 0 chr1 7162916 7162979 -275030685 + U6 snRNA snRNA 1 65 -42 3070 145 25 13 chr1 7162992 7163328 -275030336 + L1MB3 LINE L1 5321 5652 -531 1957 130 3 0 chr1 7163328 7163628 -275030036 + AluSx SINE Alu 1 301 -11 3070 145 25 13 chr1 7163628 7163978 -275029686 + L1MB3 LINE L1 5652 6182 -1 1208 133 0 122 chr1 7164009 7164272 -275029392 + AluJb SINE Alu 69 299 -13 2174 94 0 25 chr1 7164421 7164739 -275028925 - AluSq SINE Alu -3 310 1 2222 100 0 0 chr1 7165554 7165853 -275027811 + AluSq SINE Alu 1 299 -14 2213 104 0 3 chr1 7166211 7166519 -275027145 + AluSg SINE Alu 2 308 -2 1100 113 12 26 chr1 7166705 7167307 -275026357 + (ATGGTG)n Simple_repeat Simple_repeat 1 593 0 2110 114 0 3 chr1 7168718 7169017 -275024647 - AluSg SINE Alu -12 298 1 1801 138 17 14 chr1 7169042 7169338 -275024326 + AluSx SINE Alu 2 298 -14 1785 142 24 0 chr1 7169396 7169684 -275023980 + AluJb SINE Alu 1 295 -17 1787 144 17 7 chr1 7169684 7169983 -275023681 + AluSx SINE Alu 1 302 -10 2243 91 3 10 chr1 7170114 7170422 -275023242 + AluSx SINE Alu 1 306 -6 587 279 157 39 chr1 7170591 7171024 -275022640 + L2 LINE L2 2829 3312 -1 231 217 29 29 chr1 7171428 7171497 -275022167 - MLT1K LTR MaLR -495 93 25 1940 143 0 7 chr1 7171580 7171887 -275021777 - AluJo SINE Alu -7 305 1 207 255 85 66 chr1 7173956 7174062 -275019602 - L2 LINE L2 -841 2473 2366 211 213 0 0 chr1 7174203 7174250 -275019414 + L2 LINE L2 3221 3267 -5 673 81 101 0 chr1 7174409 7174508 -275019156 + HY1 scRNA scRNA 2 110 -2 2110 100 3 37 chr1 7175105 7175426 -275018238 + AluSx SINE Alu 1 310 -2 2260 86 0 0 chr1 7175434 7175736 -275017928 + AluY SINE Alu 1 302 -9 623 278 57 5 chr1 7175749 7175958 -275017706 + MER58A DNA MER1_type 5 224 0 274 174 113 42 chr1 7175960 7176031 -275017633 + MIR SINE MIR 40 117 -91 328 262 170 7 chr1 7176120 7176261 -275017403 - MIR SINE MIR -79 183 20 747 159 0 36 chr1 7176394 7176532 -275017132 + FLAM_C SINE Alu 11 143 0 2214 83 0 17 chr1 7177214 7177516 -275016148 - AluY SINE Alu -13 298 2 1608 189 0 3 chr1 7177590 7177876 -275015788 + AluJb SINE Alu 1 285 -27 808 154 114 50 chr1 7177945 7178165 -275015499 + L1MC1 LINE L1 6100 6333 0 465 292 31 42 chr1 7178230 7178490 -275015174 + L1MC4a LINE L1 5688 5944 -1864 1780 148 10 13 chr1 7178527 7178830 -275014834 - AluJb SINE Alu -10 302 1 1180 76 0 13 chr1 7178842 7178999 -275014665 + AluSg/x SINE Alu 144 298 -14 581 114 0 0 chr1 7179017 7179096 -275014568 + AluSg SINE Alu 2 80 -230 2222 97 0 3 chr1 7179096 7179406 -275014258 + AluSg SINE Alu 1 309 -1 1657 118 0 0 chr1 7179406 7179641 -275014023 + AluSg SINE Alu 73 309 -3 714 175 32 0 chr1 7179808 7179934 -275013730 + FLAM_C SINE Alu 2 131 -2 2235 67 0 0 chr1 7180372 7180680 -275012984 + AluY SINE Alu 1 308 0 21 36 0 0 chr1 7181532 7181560 -275012104 + AT_rich Low_complexity Low_complexity 1 28 0 2299 88 7 3 chr1 7182238 7182544 -275011120 + AluSq SINE Alu 1 307 -6 2384 61 0 0 chr1 7182750 7183044 -275010620 - AluY SINE Alu -17 294 1 1608 164 0 50 chr1 7183046 7183364 -275010300 - AluJo SINE Alu -10 302 1 1387 77 0 6 chr1 7183466 7183648 -275010016 - AluSx SINE Alu -12 298 118 1896 91 0 0 chr1 7183648 7183901 -275009763 - AluSq SINE Alu -1 312 60 301 146 427 0 chr1 7184250 7184332 -275009332 - Charlie1 DNA MER1_type -3 2758 2642 1849 110 10 40 chr1 7184336 7184635 -275009029 - AluSx SINE Alu -22 290 1 885 146 0 0 chr1 7184635 7184765 -275008899 - AluSx SINE Alu -177 135 6 338 60 0 20 chr1 7184767 7184817 -275008847 + MADE1 DNA Mariner 32 80 0 1454 159 31 31 chr1 7184922 7185212 -275008452 - AluJo SINE Alu -22 290 1 192 152 0 0 chr1 7185384 7185417 -275008247 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2288 60 0 0 chr1 7185429 7185741 -275007923 - AluSq SINE Alu 0 312 1 1568 193 0 13 chr1 7187182 7187483 -275006181 - AluJo SINE Alu -15 297 1 2181 92 3 0 chr1 7187514 7187807 -275005857 + AluSg SINE Alu 1 294 -16 268 312 72 8 chr1 7188147 7188272 -275005392 + L1MC/D LINE L1 5727 5859 -1949 1895 154 0 3 chr1 7188575 7188873 -275004791 + AluSx SINE Alu 1 297 -15 2074 123 17 0 chr1 7189062 7189364 -275004300 - AluSg SINE Alu -3 307 1 1558 192 0 7 chr1 7189463 7189755 -275003909 - AluJo SINE Alu -22 290 1 4393 111 33 6 chr1 7189904 7190595 -275003069 + L1MA5A LINE L1 5587 6296 -1 1578 138 20 79 chr1 7190671 7190976 -275002688 - AluJo SINE Alu -25 287 1 820 203 48 0 chr1 7191403 7191590 -275002074 + AluJb SINE Alu 113 308 -4 288 260 0 0 chr1 7191686 7191759 -275001905 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 187 312 117 0 chr1 7191759 7191836 -275001828 - L2 LINE L2 -19 3294 3209 913 176 0 0 chr1 7192150 7192298 -275001366 - FRAM SINE Alu -30 146 1 349 267 43 26 chr1 7192416 7192532 -275001132 - MER94 DNA DNA -16 118 1 483 285 130 36 chr1 7192590 7192867 -275000797 + L1MC/D LINE L1 5409 5711 -2097 733 233 158 0 chr1 7192978 7193180 -275000484 + MIR SINE MIR 8 241 -21 2101 106 7 3 chr1 7193279 7193572 -275000092 + AluSg1 SINE Alu 1 294 -15 1902 126 30 0 chr1 7193717 7194019 -274999645 + AluSx SINE Alu 1 311 -1 1576 164 39 4 chr1 7194033 7194314 -274999350 + AluJb SINE Alu 7 297 -15 21 0 0 0 chr1 7194630 7194651 -274999013 + AT_rich Low_complexity Low_complexity 1 21 0 181 213 75 150 chr1 7196183 7196263 -274997401 + L2 LINE L2 3222 3295 -18 1123 171 25 25 chr1 7196305 7196544 -274997120 - L1MA4 LINE L1 -8 6292 6054 754 83 148 0 chr1 7196544 7196652 -274997012 + MER84 LTR ERVI 1 124 -383 863 70 0 0 chr1 7196652 7196767 -274996897 - MER84-int LTR ERV1 -3598 1356 1242 1248 71 88 6 chr1 7196767 7196937 -274996727 + MER84 LTR ERVI 324 507 0 3796 137 83 27 chr1 7196946 7197309 -274996355 - L1MA4 LINE L1 -257 6043 5702 2000 138 3 0 chr1 7197309 7197614 -274996050 - AluSx SINE Alu -6 306 1 3796 137 83 27 chr1 7197614 7198201 -274995463 - L1MA4 LINE L1 -598 5702 5044 2071 116 7 0 chr1 7198201 7198511 -274995153 - AluSx SINE Alu 0 312 1 2248 115 0 0 chr1 7198540 7198852 -274994812 - AluSx SINE Alu 0 312 1 2186 91 0 7 chr1 7198905 7199202 -274994462 + AluSc SINE Alu 1 295 -14 2172 125 0 0 chr1 7199211 7199523 -274994141 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 7199609 7199633 -274994031 + AT_rich Low_complexity Low_complexity 1 24 0 1555 133 88 35 chr1 7199636 7199921 -274993743 + AluJo SINE Alu 2 301 -1 1912 109 28 7 chr1 7200195 7200478 -274993186 - AluSx SINE Alu -21 291 3 252 241 108 0 chr1 7200756 7200839 -274992825 + MLT1I LTR MaLR 46 137 -272 288 206 48 48 chr1 7200939 7201002 -274992662 + MLT1I LTR MaLR 240 302 -107 505 190 42 21 chr1 7201113 7201255 -274992409 - HAL1 LINE L1 -93 2414 2270 237 329 197 7 chr1 7201255 7201392 -274992272 - MIR SINE MIR -99 163 1 742 191 0 0 chr1 7201643 7201774 -274991890 - FLAM_A SINE Alu -2 131 1 2315 73 0 13 chr1 7202060 7202374 -274991290 + AluSq SINE Alu 1 310 -3 359 282 53 23 chr1 7202424 7202555 -274991109 + L2 LINE L2 3163 3297 -16 802 137 0 43 chr1 7203666 7203805 -274989859 - FLAM_C SINE Alu 0 133 1 2684 103 25 76 chr1 7203833 7204436 -274989228 - SVA Other Other -339 1047 476 5187 73 34 55 chr1 7204459 7205294 -274988370 - SVA Other Other -520 866 50 339 25 0 0 chr1 7205300 7205340 -274988324 + (GGGAGA)n Simple_repeat Simple_repeat 5 44 0 181 298 47 82 chr1 7205989 7206060 -274987604 + L2 LINE L2 2917 2989 -283 2304 91 3 0 chr1 7206060 7206369 -274987295 - AluSg SINE Alu 0 310 1 181 298 47 82 chr1 7206369 7206468 -274987196 + L2 LINE L2 2989 3081 -191 855 232 116 41 chr1 7206587 7206880 -274986784 - L2 LINE L2 -4 3309 2995 2260 84 0 0 chr1 7206881 7207178 -274986486 + AluSx SINE Alu 1 297 -15 824 225 78 45 chr1 7208342 7208586 -274985078 + MIR SINE MIR 2 253 -9 215 273 61 0 chr1 7208608 7208674 -274984990 + MIR SINE MIR 104 173 -89 2053 117 0 0 chr1 7208720 7209003 -274984661 - AluSx SINE Alu -29 283 1 189 354 73 0 chr1 7209059 7209141 -274984523 + MIR SINE MIR 175 262 0 1174 225 126 37 chr1 7209454 7209890 -274983774 + Charlie4a DNA MER1_type 27 501 -7 751 286 91 0 chr1 7209893 7210113 -274983551 + MIR SINE MIR 15 254 -8 180 296 0 0 chr1 7210279 7210323 -274983341 - L2 LINE L2 0 3313 3270 907 199 199 30 chr1 7210335 7210588 -274983076 - Zaphod DNA AcHobo -9 4022 3813 2191 98 0 0 chr1 7210588 7210883 -274982781 + AluSx SINE Alu 1 295 -17 907 199 199 30 chr1 7210883 7210995 -274982669 - Zaphod DNA AcHobo -218 3813 3595 * 990 224 98 35 chr1 7210993 7211484 -274982180 - Zaphod DNA AcHobo -3041 990 469 1393 125 5 5 chr1 7211486 7211702 -274981962 + AluJb SINE Alu 84 299 -13 667 248 159 37 chr1 7211760 7212087 -274981577 - Zaphod DNA AcHobo -3593 438 72 505 219 42 17 chr1 7212097 7212216 -274981448 + Zaphod DNA AcHobo 3905 4026 -5 180 125 0 0 chr1 7212778 7212810 -274980854 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2280 86 0 10 chr1 7212812 7213126 -274980538 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 7213200 7213221 -274980443 + AT_rich Low_complexity Low_complexity 1 21 0 1747 171 10 0 chr1 7213493 7213792 -274979872 - AluJb SINE Alu -10 302 1 378 282 99 50 chr1 7214425 7214606 -274979058 - MIR SINE MIR -14 248 59 315 0 0 0 chr1 7215150 7215185 -274978479 + (TCC)n Simple_repeat Simple_repeat 1 35 0 431 213 11 33 chr1 7215232 7215415 -274978249 + CT-rich Low_complexity Low_complexity 2 180 0 1648 123 82 10 chr1 7215428 7215759 -274977905 - AluSq SINE Alu 0 352 1 218 275 113 65 chr1 7215940 7216169 -274977495 + MIR SINE MIR 20 259 -3 679 228 132 0 chr1 7217633 7217800 -274975864 + MIR SINE MIR 68 256 -6 2320 87 0 0 chr1 7218055 7218354 -274975310 - AluSx SINE Alu -13 299 1 33 25 0 0 chr1 7219328 7219368 -274974296 + AT_rich Low_complexity Low_complexity 1 40 0 1508 150 70 28 chr1 7219929 7220216 -274973448 + AluJb SINE Alu 1 299 -13 762 214 46 100 chr1 7220467 7220747 -274972917 + MER5C DNA MER1_type 8 272 -52 1972 105 3 7 chr1 7220932 7221258 -274972406 - AluSq SINE Alu 0 325 1 314 288 137 7 chr1 7221433 7221572 -274972092 - MIR SINE MIR 0 262 106 1269 137 27 41 chr1 7221623 7221842 -274971822 - AluJo SINE Alu -90 222 7 281 311 39 10 chr1 7221851 7221954 -274971710 - MIR SINE MIR -150 112 7 2171 110 7 0 chr1 7222655 7222963 -274970701 - AluSg SINE Alu 0 310 1 1563 154 16 38 chr1 7222979 7223298 -274970366 - AluJo SINE Alu 0 312 1 2091 105 0 23 chr1 7223352 7223657 -274970007 - AluSx SINE Alu -14 298 1 1542 115 165 11 chr1 7223677 7223937 -274969727 - AluSg SINE Alu 0 300 1 825 186 32 50 chr1 7224338 7224559 -274969105 + MER20 DNA MER1_type 3 219 0 708 111 0 0 chr1 7224630 7224738 -274968926 + (TG)n Simple_repeat Simple_repeat 1 108 0 180 277 21 0 chr1 7224960 7225007 -274968657 + MIR SINE MIR 201 248 -14 2196 79 24 0 chr1 7225238 7225530 -274968134 - AluSp SINE Alu -14 299 1 1555 273 67 62 chr1 7225613 7226547 -274967117 - L1ME3A LINE L1 -30 6140 5188 1590 160 3 42 chr1 7226604 7226891 -274966773 - AluJo SINE Alu -11 301 26 482 114 29 0 chr1 7227043 7227113 -274966551 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2284 80 10 3 chr1 7227124 7227424 -274966240 + AluSq SINE Alu 1 302 -11 3682 221 70 14 chr1 7227444 7227791 -274965873 - L1MD2 LINE L1 -13 6740 6414 1320 147 184 109 chr1 7227791 7227925 -274965739 - MER65A LTR ERV1 0 445 322 2214 98 0 16 chr1 7227925 7228240 -274965424 + AluSx SINE Alu 1 310 -2 1320 147 184 109 chr1 7228240 7228458 -274965206 - MER65A LTR ERV1 -123 322 122 191 61 30 0 chr1 7228458 7228491 -274965173 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1772 136 45 0 chr1 7228495 7228782 -274964882 - AluSx SINE Alu -12 300 1 1320 147 184 109 chr1 7228782 7228837 -274964827 - MER65A LTR ERV1 -325 120 1 3682 221 70 14 chr1 7228837 7229709 -274963955 - L1MD2 LINE L1 -339 6414 5398 999 125 0 7 chr1 7229712 7229864 -274963800 - AluJb SINE Alu -18 294 144 2285 152 28 54 chr1 7229874 7230303 -274963361 - LTR3 LTR ERVK -10 422 5 873 133 0 0 chr1 7230318 7230446 -274963218 - FLAM_C SINE Alu -11 132 5 1358 228 54 50 chr1 7230451 7230916 -274962748 - L1MD2 LINE L1 -1144 5396 4930 1721 148 19 0 chr1 7230917 7231181 -274962483 - Tigger3b DNA MER2_type 0 1231 963 2007 119 0 0 chr1 7231192 7231470 -274962194 + AluSx SINE Alu 2 279 -33 3599 104 2 4 chr1 7231470 7231950 -274961714 + MER1A DNA MER1_type 51 529 0 * 4739 129 38 32 chr1 7231950 7232076 -274961588 - Tigger3b DNA MER2_type -2195 833 709 1977 102 42 0 chr1 7232076 7232360 -274961304 - AluSq SINE Alu -17 296 1 4739 129 38 32 chr1 7232360 7232732 -274960932 - Tigger3b DNA MER2_type -2319 709 341 275 0 29 0 chr1 7232732 7232767 -274960897 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1888 116 4 4 chr1 7232770 7233047 -274960617 - AluSx SINE Alu -35 277 1 369 0 0 0 chr1 7233056 7233097 -274960567 + (TA)n Simple_repeat Simple_repeat 2 42 0 4739 129 38 32 chr1 7233097 7233411 -274960253 - Tigger3b DNA MER2_type -2695 333 1 519 208 33 0 chr1 7233413 7233533 -274960131 - L1MD2 LINE L1 -1612 4928 4805 1639 165 3 14 chr1 7233542 7233833 -274959831 - AluJo SINE Alu -22 290 3 1633 250 63 39 chr1 7233835 7234191 -274959473 - L1MD2 LINE L1 -5515 1025 679 2279 101 0 0 chr1 7234191 7234497 -274959167 + AluSg SINE Alu 1 306 -4 1633 250 63 39 chr1 7234497 7234562 -274959102 - L1MD2 LINE L1 -5861 679 617 2045 133 0 0 chr1 7234562 7234862 -274958802 - AluSx SINE Alu -12 300 1 1633 250 63 39 chr1 7234862 7235029 -274958635 - L1MD2 LINE L1 -5923 617 122 2219 70 0 11 chr1 7235692 7236006 -274957658 - AluSg1 SINE Alu 0 311 1 2051 116 0 0 chr1 7236009 7236338 -274957326 - AluSq SINE Alu 0 329 1 1592 149 52 21 chr1 7236728 7237016 -274956648 - AluJb SINE Alu -15 297 1 904 138 14 0 chr1 7237678 7237816 -274955848 - FAM SINE Alu -28 157 18 1958 128 30 0 chr1 7237870 7238166 -274955498 - AluSx SINE Alu -7 305 1 369 313 23 31 chr1 7238166 7238294 -274955370 - MLT1I LTR MaLR -80 329 203 760 252 45 77 chr1 7238442 7238725 -274954939 - L1MC/D LINE L1 -746 5400 5315 1697 145 46 3 chr1 7238725 7239008 -274954656 + AluJb SINE Alu 1 295 -17 760 252 45 77 chr1 7239008 7239102 -274954562 - L1MC/D LINE L1 -831 5315 5219 1832 148 0 7 chr1 7239106 7239390 -274954274 + AluSq SINE Alu 1 282 -31 222 116 0 0 chr1 7239393 7239436 -274954228 + (TA)n Simple_repeat Simple_repeat 2 44 0 36 23 0 0 chr1 7239457 7239500 -274954164 + AT_rich Low_complexity Low_complexity 1 43 0 803 112 0 0 chr1 7239517 7239624 -274954040 - AluJb SINE Alu -201 111 5 1052 303 64 30 chr1 7239631 7240161 -274953503 - L1MC/D LINE L1 -922 5224 4665 2182 94 3 7 chr1 7240161 7240460 -274953204 + AluSx SINE Alu 1 298 -14 1052 303 64 30 chr1 7240460 7240599 -274953065 - L1MC/D LINE L1 -1481 4665 4532 2233 96 0 3 chr1 7241706 7242008 -274951656 + AluSx SINE Alu 4 304 -8 2164 123 0 0 chr1 7242018 7242328 -274951336 + AluSx SINE Alu 1 310 -2 1401 149 0 5 chr1 7242338 7242552 -274951112 + AluJb SINE Alu 85 297 -15 356 181 12 0 chr1 7243125 7243208 -274950456 + G-rich Low_complexity Low_complexity 2 85 0 1899 67 0 4 chr1 7243378 7243632 -274950032 + AluY SINE Alu 1 253 -58 192 97 0 0 chr1 7243632 7243663 -274950001 + (A)n Simple_repeat Simple_repeat 1 31 0 783 172 8 0 chr1 7243683 7243817 -274949847 + FLAM_C SINE Alu 9 143 0 1972 171 97 95 chr1 7243916 7244526 -274949138 - LTR36 LTR ERV1 0 611 1 1598 153 0 8 chr1 7244679 7244940 -274948724 + AluSx SINE Alu 44 302 -10 1904 125 90 39 chr1 7244940 7245275 -274948389 - MER101 LTR ERV1 -122 352 1 2330 61 7 0 chr1 7245474 7245771 -274947893 - AluSx SINE Alu -13 299 1 476 312 158 14 chr1 7245804 7246019 -274947645 + MIR SINE MIR 7 252 -10 1324 126 0 102 chr1 7246385 7246678 -274946986 + AluJo SINE Alu 47 309 -3 3534 120 47 34 chr1 7246686 7247304 -274946360 - MER39B LTR ERV1 -2 651 26 2131 89 28 3 chr1 7247478 7247769 -274945895 + AluSx SINE Alu 1 298 -14 2089 104 3 10 chr1 7247819 7248116 -274945548 - AluSx SINE Alu -4 308 14 21 0 0 0 chr1 7248122 7248143 -274945521 + AT_rich Low_complexity Low_complexity 1 21 0 928 92 0 0 chr1 7248160 7248279 -274945385 + THE1B LTR MaLR 1 119 -245 2012 103 50 0 chr1 7248301 7248583 -274945081 + AluSg SINE Alu 1 296 -14 1032 97 14 7 chr1 7248585 7248729 -274944935 + THE1B LTR MaLR 220 364 0 2003 111 16 29 chr1 7248911 7249076 -274944588 - AluSx SINE Alu -10 302 141 1872 128 17 0 chr1 7249076 7249372 -274944292 - AluSx SINE Alu -11 301 1 2003 111 16 29 chr1 7249372 7249512 -274944152 - AluSx SINE Alu -171 141 1 1235 185 65 45 chr1 7249734 7250026 -274943638 - AluJo SINE Alu -3 299 2 1762 144 17 17 chr1 7250124 7250423 -274943241 - AluSx SINE Alu -13 299 1 887 27 0 9 chr1 7250881 7250992 -274942672 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1528 158 3 67 chr1 7251686 7251856 -274941808 - MLT2D LTR ERVL -135 279 100 606 63 13 0 chr1 7251856 7251935 -274941729 + MADE1 DNA Mariner 1 80 0 1528 158 3 67 chr1 7251935 7251949 -274941715 - MLT2D LTR ERVL -314 100 87 2160 85 13 7 chr1 7251949 7252255 -274941409 + AluSp SINE Alu 1 308 -5 1528 158 3 67 chr1 7252255 7252367 -274941297 - MLT2D LTR ERVL -327 87 1 2225 96 3 0 chr1 7252466 7252769 -274940895 - AluSx SINE Alu -8 304 1 1555 154 0 42 chr1 7252891 7253176 -274940488 - AluJo SINE Alu -6 306 34 29 70 0 0 chr1 7253273 7253330 -274940334 + AT_rich Low_complexity Low_complexity 1 57 0 1766 134 10 10 chr1 7253703 7253988 -274939676 + AluSx SINE Alu 1 286 -21 191 61 30 0 chr1 7253988 7254021 -274939643 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 722 219 3 0 chr1 7254050 7254374 -274939290 + GA-rich Low_complexity Low_complexity 1 324 0 186 43 0 0 chr1 7254380 7254403 -274939261 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 215 361 37 9 chr1 7254502 7254610 -274939054 - MIR3 SINE MIR -21 187 77 697 142 50 8 chr1 7254672 7254792 -274938872 + AluJ SINE Alu 2 126 -186 376 320 12 17 chr1 7255362 7255534 -274938130 + L2 LINE L2 2818 2988 -325 193 214 24 0 chr1 7255560 7255602 -274938062 + L2 LINE L2 2313 2355 -959 431 151 35 47 chr1 7255673 7255759 -274937905 + MIR SINE MIR 120 204 -58 225 0 0 0 chr1 7255760 7255785 -274937879 + (CA)n Simple_repeat Simple_repeat 2 26 0 265 244 0 26 chr1 7255792 7255870 -274937794 + (TA)n Simple_repeat Simple_repeat 2 77 0 239 222 19 0 chr1 7255870 7255924 -274937740 + MIR SINE MIR 196 250 -12 453 285 94 43 chr1 7255968 7256203 -274937461 + L2 LINE L2 2425 2671 -643 811 302 14 14 chr1 7256226 7256577 -274937087 + L1M4 LINE L1 3340 3690 -2456 2006 124 0 13 chr1 7256598 7256897 -274936767 - AluSx SINE Alu -17 295 1 1714 174 7 7 chr1 7256972 7257277 -274936387 - AluJb SINE Alu -7 305 1 925 226 157 32 chr1 7257277 7257670 -274935994 + MLT1F1 LTR MaLR 28 546 -21 999 150 0 6 chr1 7257719 7257879 -274935785 + AluJ SINE Alu 136 294 -18 25 51 0 0 chr1 7257922 7257961 -274935703 + AT_rich Low_complexity Low_complexity 1 39 0 2193 180 78 32 chr1 7258062 7258132 -274935532 + LTR42 LTR ERVL 1 66 -429 2210 123 153 5 chr1 7258132 7258505 -274935159 + MSTA LTR MaLR 1 428 0 2193 180 78 32 chr1 7258505 7258650 -274935014 + LTR42 LTR ERVL 66 203 -292 2113 59 0 7 chr1 7258650 7258920 -274934744 + AluY SINE Alu 36 303 -8 2193 180 78 32 chr1 7258920 7259176 -274934488 + LTR42 LTR ERVL 203 495 0 1386 264 82 40 chr1 7259177 7259505 -274934159 + L1M4 LINE L1 4099 4412 -1734 2187 92 0 10 chr1 7259505 7259800 -274933864 + AluSq SINE Alu 1 292 -21 1386 264 82 40 chr1 7259800 7260191 -274933473 + L1M4 LINE L1 4412 4848 -1298 21 36 0 0 chr1 7260353 7260381 -274933283 + AT_rich Low_complexity Low_complexity 1 28 0 2106 105 0 7 chr1 7260394 7260689 -274932975 + AluSx SINE Alu 1 293 -19 34 24 0 0 chr1 7260792 7260833 -274932831 + AT_rich Low_complexity Low_complexity 1 41 0 231 211 18 0 chr1 7260994 7261051 -274932613 - L1 LINE L1 -2584 3562 3505 289 214 48 24 chr1 7261071 7261155 -274932509 - L1 LINE L1 -1143 5003 4918 2126 127 0 0 chr1 7261997 7262305 -274931359 - AluSq SINE Alu -5 308 1 613 125 0 0 chr1 7262453 7262541 -274931123 - AluJo/FRAM SINE Alu -22 290 203 1062 93 7 0 chr1 7262542 7262692 -274930972 - AluSg SINE Alu -159 151 1 183 357 0 0 chr1 7262726 7262796 -274930868 + MER5A DNA MER1_type 10 79 -110 1829 147 30 0 chr1 7262918 7263218 -274930446 + AluJb SINE Alu 1 309 -3 198 167 0 0 chr1 7263227 7263263 -274930401 + A-rich Low_complexity Low_complexity 1 36 0 229 341 35 12 chr1 7263384 7263469 -274930195 + MIR3 SINE MIR 13 99 -109 1428 153 81 0 chr1 7263872 7264161 -274929503 - AluJb SINE Alu 0 310 1 193 234 141 16 chr1 7264295 7264359 -274929305 - L2 LINE L2 -1 3271 3200 2214 192 24 34 chr1 7264413 7264605 -274929059 + MLT1D LTR MaLR 5 197 -308 1927 120 0 35 chr1 7264605 7264922 -274928742 + AluSx SINE Alu 1 306 -6 2214 192 24 34 chr1 7264922 7265235 -274928429 + MLT1D LTR MaLR 197 505 0 556 229 54 34 chr1 7265404 7265609 -274928055 - L1ME2 LINE L1 -78 6086 5878 1629 190 146 39 chr1 7265628 7265792 -274927872 - L1MA8 LINE L1 -2 6289 6144 626 0 0 13 chr1 7265792 7265867 -274927797 + (TTTC)n Simple_repeat Simple_repeat 3 76 0 1589 110 0 0 chr1 7265867 7266095 -274927569 - AluSx SINE Alu -31 281 54 1629 190 146 39 chr1 7266095 7266550 -274927114 - L1MA8 LINE L1 -146 6145 5590 853 182 0 24 chr1 7266579 7266744 -274926920 - AluJo SINE Alu -113 199 39 413 210 59 25 chr1 7266809 7266928 -274926736 - L1ME2 LINE L1 -409 5712 5590 459 108 0 0 chr1 7267250 7267315 -274926349 - AluSx SINE Alu -14 298 234 2159 82 0 3 chr1 7267315 7267607 -274926057 - AluY SINE Alu -20 291 1 1573 111 11 73 chr1 7267608 7267869 -274925795 - AluSx SINE Alu -67 245 1 1697 166 0 57 chr1 7267919 7268250 -274925414 - AluJb SINE Alu 0 312 1 477 277 48 32 chr1 7268344 7268532 -274925132 - MIR SINE MIR -44 218 28 256 311 261 23 chr1 7268518 7268824 -274924840 - L3 LINE CR1 -258 1319 941 * 1424 138 59 45 chr1 7269613 7269903 -274923761 - AluJb SINE Alu -7 305 12 2146 90 33 0 chr1 7270321 7270621 -274923043 - AluSg SINE Alu 0 310 1 224 118 0 59 chr1 7271454 7271505 -274922159 + (CCCCCA)n Simple_repeat Simple_repeat 5 52 0 216 312 13 52 chr1 7271459 7271613 -274922051 + (CCCCG)n Simple_repeat Simple_repeat 1 148 0 * 229 309 32 16 chr1 7271689 7271812 -274921852 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 991 129 11 0 chr1 7272227 7272405 -274921259 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 775 150 29 0 chr1 7272432 7272605 -274921059 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 191 179 24 36 chr1 7272618 7272702 -274920962 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 2014 137 0 23 chr1 7272783 7273089 -274920575 + AluJb SINE Alu 1 299 -13 203 217 188 29 chr1 7273154 7273223 -274920441 - L2 LINE L2 -7 3306 3227 1145 139 414 0 chr1 7273223 7273314 -274920350 - Tigger1 DNA MER2_type 0 2418 2366 1584 94 115 0 chr1 7273314 7273549 -274920115 + AluSp SINE Alu 37 298 -15 1145 139 414 0 chr1 7273549 7273701 -274919963 - Tigger1 DNA MER2_type -52 2366 2074 15623 155 34 25 chr1 7273712 7275041 -274918623 - L1MDa LINE L1 -11 6686 5370 1573 189 0 0 chr1 7275041 7275337 -274918327 - AluJo SINE Alu -14 298 3 15623 155 34 25 chr1 7275337 7277111 -274916553 - L1MDa LINE L1 -1327 5370 3613 1685 157 0 20 chr1 7277111 7277405 -274916259 - AluJo SINE Alu -12 300 13 15623 155 34 25 chr1 7277405 7277632 -274916032 - L1MDa LINE L1 -3084 3613 3389 1757 174 0 0 chr1 7277632 7277933 -274915731 - AluSx SINE Alu 0 301 1 15623 155 34 25 chr1 7277933 7278679 -274914985 - L1MDa LINE L1 -3308 3389 2571 642 193 0 0 chr1 7278683 7278792 -274914872 - FLAM_A SINE Alu -16 126 18 4108 127 34 52 chr1 7278797 7279505 -274914159 - L1M2 LINE L1 -3960 3249 2555 2305 88 0 0 chr1 7279505 7279799 -274913865 - AluSg SINE Alu -16 294 1 4108 127 34 52 chr1 7279799 7279884 -274913780 - L1M2 LINE L1 -4654 2555 2470 2493 235 223 50 chr1 7279888 7280235 -274913429 - L1M2 LINE L1 -4860 2349 2063 2152 108 10 3 chr1 7280235 7280542 -274913122 - AluSc SINE Alu 0 309 1 2493 235 223 50 chr1 7280542 7281460 -274912204 - L1M2 LINE L1 -5146 2063 947 873 285 169 24 chr1 7281464 7281969 -274911695 - L1M2 LINE L1 -5601 1608 1111 2051 133 39 47 chr1 7281973 7282018 -274911646 - THE1C LTR MaLR 0 428 384 2460 64 0 0 chr1 7282018 7282329 -274911335 + AluY SINE Alu 1 311 0 2051 133 39 47 chr1 7282329 7282697 -274910967 - THE1C LTR MaLR -44 384 1 3600 185 100 3 chr1 7282697 7283417 -274910247 - L1M2 LINE L1 -6418 791 2 13088 124 18 25 chr1 7283467 7285062 -274908602 - Tigger1 DNA MER2_type -341 2077 499 2449 55 3 7 chr1 7285062 7285372 -274908292 - AluSc SINE Alu 0 309 1 13088 124 18 25 chr1 7285372 7285865 -274907799 - Tigger1 DNA MER2_type -1919 499 4 1621 219 119 30 chr1 7286096 7286593 -274907071 + MER90 LTR ERV1 74 614 0 1843 172 50 34 chr1 7286906 7287290 -274906374 - MLT1B LTR MaLR 0 390 1 191 263 121 30 chr1 7288167 7288266 -274905398 + MIR SINE MIR 45 152 -56 1603 155 129 35 chr1 7288312 7288654 -274905010 - MLT1A2 LTR MaLR 0 374 1 1617 191 15 61 chr1 7289412 7289491 -274904173 - MLT1B LTR MaLR 0 390 309 1998 109 3 0 chr1 7289491 7289797 -274903867 - AluSx SINE Alu 0 307 1 1617 191 15 61 chr1 7289797 7290125 -274903539 - MLT1B LTR MaLR -81 309 1 2124 120 0 0 chr1 7290222 7290531 -274903133 + AluSq SINE Alu 1 309 -4 1137 136 61 48 chr1 7291367 7291438 -274902226 + MLT1B LTR MaLR 1 70 -320 1644 164 20 10 chr1 7291438 7291736 -274901928 - AluJo SINE Alu -11 301 1 1137 136 61 48 chr1 7291736 7291892 -274901772 + MLT1B LTR MaLR 70 231 -159 833 141 36 123 chr1 7292462 7292513 -274901151 + MLT1B LTR MaLR 183 237 -153 1851 239 80 15 chr1 7292513 7293110 -274900554 - LTR48B LTR ERV1 -4 640 5 833 141 36 123 chr1 7293110 7293278 -274900386 + MLT1B LTR MaLR 237 383 -7 407 203 134 80 chr1 7293468 7293655 -274900009 + MLT1F1 LTR MaLR 366 562 -5 923 222 108 90 chr1 7293750 7293981 -274899683 - L2 LINE L2 0 3313 3088 2297 64 3 0 chr1 7293981 7294264 -274899400 + AluSp SINE Alu 1 284 -29 1299 13 0 0 chr1 7294264 7294413 -274899251 + (CAATA)n Simple_repeat Simple_repeat 2 150 0 923 222 108 90 chr1 7294413 7294558 -274899106 - L2 LINE L2 -224 3089 2929 2053 119 50 74 chr1 7294573 7294901 -274898763 + MSTB1 LTR MaLR 40 358 -74 597 77 0 0 chr1 7294901 7294979 -274898685 - MADE1 DNA Mariner -2 78 1 2053 119 50 74 chr1 7294979 7295053 -274898611 + MSTB1 LTR MaLR 358 432 0 2044 74 7 42 chr1 7295167 7295476 -274898188 + AluSx SINE Alu 1 298 -14 206 175 53 0 chr1 7295713 7295770 -274897894 + MIR SINE MIR 37 96 -166 621 273 33 0 chr1 7295871 7296054 -274897610 + L2 LINE L2 1711 1899 -1415 666 295 74 8 chr1 7296056 7296314 -274897350 + L2 LINE L2 2285 2559 -755 2004 136 3 0 chr1 7296330 7296631 -274897033 - AluSx SINE Alu -10 302 1 863 192 6 6 chr1 7296648 7296830 -274896834 + AluJo SINE Alu 127 308 -4 841 268 242 3 chr1 7296830 7297315 -274896349 + L2 LINE L2 2706 3311 -2 1751 151 0 4 chr1 7297385 7297664 -274896000 - AluJb SINE Alu -22 290 13 345 248 62 31 chr1 7297811 7297940 -274895724 + L2 LINE L2 2921 3053 -260 239 137 0 39 chr1 7298105 7298156 -274895508 + (TTAAA)n Simple_repeat Simple_repeat 2 50 0 1867 134 3 24 chr1 7298509 7298807 -274894857 + AluSx SINE Alu 1 292 -20 1777 163 10 0 chr1 7299521 7299815 -274893849 - AluJb SINE Alu -9 303 7 470 45 0 15 chr1 7300247 7300313 -274893351 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1948 118 0 0 chr1 7300334 7300613 -274893051 - AluSx SINE Alu -33 279 1 368 271 132 60 chr1 7300941 7301222 -274892442 + L2 LINE L2 3005 3305 -8 223 122 0 49 chr1 7301192 7301233 -274892431 - L2 LINE L2 0 3313 3275 * 1142 179 9 0 chr1 7301261 7301392 -274892272 + AluJo SINE Alu 1 137 -175 1383 195 28 21 chr1 7301392 7301709 -274891955 + AluJb SINE Alu 1 319 0 1142 179 9 0 chr1 7301709 7301794 -274891870 + AluJo SINE Alu 137 220 -92 1795 119 0 0 chr1 7301825 7302085 -274891579 - AluSq SINE Alu -48 265 6 330 169 60 12 chr1 7302095 7302178 -274891486 - L1M4 LINE L1 -946 5200 5114 * 1100 128 58 66 chr1 7302171 7302215 -274891449 - L1MA8 LINE L1 -11 6280 6237 2194 107 0 0 chr1 7302215 7302513 -274891151 - AluSq SINE Alu -15 298 1 231 36 0 0 chr1 7302516 7302544 -274891120 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1100 128 58 66 chr1 7302544 7302738 -274890926 - L1MA8 LINE L1 -56 6235 6040 260 247 43 21 chr1 7302741 7302834 -274890830 - L1M4 LINE L1 -1023 5123 5029 1609 128 115 35 chr1 7302851 7303022 -274890642 - AluJb SINE Alu -1 311 106 2311 92 0 0 chr1 7303022 7303328 -274890336 - AluSg SINE Alu -4 306 1 1609 128 115 35 chr1 7303328 7303444 -274890220 - AluJb SINE Alu -206 106 1 319 284 157 41 chr1 7303470 7303667 -274889997 - L2 LINE L2 -564 2750 2531 409 267 82 20 chr1 7306905 7307051 -274886613 + MIR SINE MIR 105 259 -3 2213 101 0 0 chr1 7307123 7307421 -274886243 + AluSx SINE Alu 2 299 -13 2227 71 14 0 chr1 7307881 7308164 -274885500 + AluSq SINE Alu 1 287 -26 372 281 170 7 chr1 7308361 7308514 -274885150 + MER5A DNA MER1_type 12 189 0 1769 138 14 0 chr1 7308575 7308857 -274884807 + AluSx SINE Alu 1 286 -26 253 68 45 0 chr1 7308858 7308902 -274884762 + (CAATA)n Simple_repeat Simple_repeat 2 47 0 1789 129 37 0 chr1 7308933 7309225 -274884439 - AluJb SINE Alu 0 302 1 1626 188 10 0 chr1 7310036 7310368 -274883296 + AluSx SINE Alu 1 335 0 2308 63 10 3 chr1 7311002 7311304 -274882360 + AluY SINE Alu 1 304 -7 672 284 48 22 chr1 7311563 7311792 -274881872 + MIR SINE MIR 28 262 0 366 100 0 0 chr1 7311956 7312006 -274881658 + MER85 DNA T2_type 90 139 0 207 196 0 0 chr1 7313316 7313362 -274880302 + A-rich Low_complexity Low_complexity 1 46 0 2058 118 3 0 chr1 7314875 7315171 -274878493 - AluSg SINE Alu -13 297 1 1475 156 67 15 chr1 7315214 7315484 -274878180 + MER7A DNA MER2_type 1 282 -64 1691 160 65 7 chr1 7315693 7316000 -274877664 + L1M4c LINE L1 13 337 -6047 8602 152 51 29 chr1 7316003 7316141 -274877523 + L1M4c LINE L1 711 844 -5538 1565 96 13 22 chr1 7316141 7316371 -274877293 - MER30 DNA MER1_type -2 228 1 8602 152 51 29 chr1 7316371 7316488 -274877176 + L1M4c LINE L1 844 957 -5425 1620 157 52 0 chr1 7316488 7316775 -274876889 + AluJo SINE Alu 5 306 -6 1797 155 34 0 chr1 7316775 7317071 -274876593 + AluJo SINE Alu 1 307 -5 8602 152 51 29 chr1 7317071 7318619 -274875045 + L1M4c LINE L1 956 2556 -3826 1454 163 45 7 chr1 7318632 7318704 -274874960 + L1MB3 LINE L1 5882 5950 -233 1939 120 32 0 chr1 7318704 7318987 -274874677 + AluSx SINE Alu 13 304 -8 1454 163 45 7 chr1 7318987 7319202 -274874462 + L1MB3 LINE L1 5950 6180 -3 1418 139 46 8 chr1 7319353 7319591 -274874073 - AluJo SINE Alu -56 256 10 262 298 92 83 chr1 7320003 7320231 -274873433 + MIR SINE MIR 33 262 0 2000 115 7 3 chr1 7320913 7321201 -274872463 + AluSx SINE Alu 1 289 -23 1465 109 0 0 chr1 7321201 7321403 -274872261 + AluSg/x SINE Alu 106 307 -3 198 248 85 43 chr1 7321780 7321921 -274871743 + L2 LINE L2 723 869 -2445 376 353 147 9 chr1 7321987 7322449 -274871215 + L2 LINE L2 1026 1551 -1763 27 73 0 0 chr1 7322558 7322613 -274871051 + AT_rich Low_complexity Low_complexity 1 55 0 1658 171 7 14 chr1 7322634 7322940 -274870724 + AluJo SINE Alu 1 304 0 8809 211 92 22 chr1 7322958 7323172 -274870492 + L1ME1 LINE L1 1846 2043 -4172 2003 121 13 3 chr1 7323172 7323478 -274870186 + AluSx SINE Alu 1 309 -3 8809 211 92 22 chr1 7323478 7324390 -274869274 + L1ME1 LINE L1 2043 2889 -3326 984 189 6 0 chr1 7324390 7324554 -274869110 + FRAM SINE Alu 1 165 -1 8809 211 92 22 chr1 7324554 7324719 -274868945 + L1ME1 LINE L1 2889 3041 -3174 2050 128 0 3 chr1 7324719 7325025 -274868639 + AluSg SINE Alu 1 305 -5 8809 211 92 22 chr1 7325025 7326781 -274866883 + L1ME1 LINE L1 3041 5092 -1123 1316 222 33 3 chr1 7326788 7327090 -274866574 + L1ME1 LINE L1 5918 6228 -7 2651 165 77 0 chr1 7327610 7328076 -274865588 + Tigger7 DNA MER2_type 1 502 -231 1114 125 35 25 chr1 7328075 7328275 -274865389 + Tigger7 DNA MER2_type 2386 2587 0 * 404 299 52 15 chr1 7328453 7328587 -274865077 - L2 LINE L2 -6 3307 3169 * 541 296 77 0 chr1 7328571 7328767 -274864897 - MIR SINE MIR -50 212 2 820 107 25 16 chr1 7331349 7331470 -274862194 - AluSc SINE Alu -56 253 132 2252 129 3 0 chr1 7331471 7331782 -274861882 - AluSq SINE Alu -1 312 1 360 308 61 20 chr1 7331795 7332042 -274861622 - L1MC4a LINE L1 -1837 5971 5715 231 100 0 0 chr1 7332069 7332109 -274861555 - L1MA4 LINE L1 -3 6297 6258 596 204 107 51 chr1 7332284 7332500 -274861164 + L1MEc LINE L1 40 267 -6129 * 1672 212 39 16 chr1 7332489 7332876 -274860788 + L1MEc LINE L1 470 865 -5531 602 201 67 7 chr1 7332882 7333031 -274860633 + L1M4 LINE L1 4630 4787 -1359 * 2553 242 107 30 chr1 7333027 7333730 -274859934 - L1MEc LINE L1 -2907 3308 2660 2408 73 3 23 chr1 7333730 7334031 -274859633 - AluSp SINE Alu -18 295 1 2553 242 107 30 chr1 7334031 7334314 -274859350 - L1MEc LINE L1 -3555 2660 2400 1530 193 3 47 chr1 7334314 7334615 -274859049 - AluJo SINE Alu -24 288 1 2553 242 107 30 chr1 7334615 7334810 -274858854 - L1MEc LINE L1 -3815 2400 2089 2326 85 10 0 chr1 7334839 7335133 -274858531 + AluSx SINE Alu 1 297 -15 840 176 15 0 chr1 7335137 7335268 -274858396 - FLAM_C SINE Alu -10 133 1 230 355 0 50 chr1 7335313 7335454 -274858210 + MIR SINE MIR 19 152 -110 231 320 10 0 chr1 7336003 7336100 -274857564 + MIR SINE MIR 159 256 -6 301 229 0 36 chr1 7336454 7336537 -274857127 - MIR SINE MIR 0 262 183 1617 113 4 9 chr1 7337481 7337712 -274855952 + MER30 DNA MER1_type 1 230 0 300 250 64 58 chr1 7338211 7338367 -274855297 + L1MC4a LINE L1 5790 5946 -1862 700 239 49 22 chr1 7338553 7338737 -274854927 + MER3 DNA MER1_type 7 195 -14 284 350 107 0 chr1 7338749 7338946 -274854718 - L2 LINE L2 -1143 2171 1954 1216 206 164 62 chr1 7339063 7339639 -274854025 - L1MC4a LINE L1 0 7808 7159 2758 231 175 37 chr1 7339659 7340978 -274852686 - L1MD3 LINE L1 -747 6194 5972 282 150 0 0 chr1 7340978 7341018 -274852646 - 5S rRNA rRNA -79 42 3 272 222 56 0 chr1 7341023 7341095 -274852569 - L1MD3 LINE L1 -962 5979 5904 * 1191 241 104 14 chr1 7341083 7341374 -274852290 - L1MD3 LINE L1 -2884 4057 3711 2326 86 3 25 chr1 7341374 7341688 -274851976 - AluY SINE Alu -4 307 1 1191 241 104 14 chr1 7341688 7341836 -274851828 - L1MD3 LINE L1 -3230 3711 3578 1866 245 188 38 chr1 7341837 7342264 -274851400 - L1MD3 LINE L1 -3675 3266 2904 586 179 80 0 chr1 7342264 7342376 -274851288 - FLAM_A SINE Alu -12 121 1 1866 245 188 38 chr1 7342376 7343873 -274849791 - L1MD3 LINE L1 -4037 2904 994 308 304 73 16 chr1 7343914 7344105 -274849559 - L1MD3 LINE L1 -6210 213 12 2652 49 3 0 chr1 7344742 7345047 -274848617 - AluY SINE Alu -5 306 1 1220 218 26 95 chr1 7345585 7345975 -274847689 + MLT1A1 LTR MaLR 1 363 -2 206 283 0 0 chr1 7346625 7346671 -274846993 + (TTA)n Simple_repeat Simple_repeat 3 48 0 194 244 0 0 chr1 7349081 7349126 -274844538 - L2 LINE L2 -12 3260 3216 2448 100 0 0 chr1 7349132 7349441 -274844223 - AluSx SINE Alu -3 309 1 181 264 36 55 chr1 7349530 7349640 -274844024 - MIR SINE MIR -153 109 2 339 294 87 33 chr1 7349693 7349877 -274843787 - MIR SINE MIR -62 200 7 576 285 21 11 chr1 7350165 7350351 -274843313 + L2 LINE L2 3126 3313 0 233 160 0 20 chr1 7350527 7350577 -274843087 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 1981 131 0 27 chr1 7350578 7350875 -274842789 - AluJo SINE Alu -12 300 12 312 333 76 8 chr1 7351269 7351401 -274842263 + L2 LINE L2 3171 3311 -2 2202 116 3 0 chr1 7352224 7352518 -274841146 + AluSx SINE Alu 1 295 -17 1819 159 3 10 chr1 7352692 7352993 -274840671 + AluJb SINE Alu 3 301 -11 250 249 135 21 chr1 7353070 7353263 -274840401 - L1ME4a LINE L1 -65 6056 5842 2147 118 3 0 chr1 7353796 7354085 -274839579 - AluSx SINE Alu -22 290 1 462 293 27 14 chr1 7354535 7354682 -274838982 + MER5A DNA MER1_type 18 166 -23 2292 109 0 7 chr1 7354827 7355130 -274838534 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr1 7355427 7355452 -274838212 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 7356025 7356048 -274837616 + AT_rich Low_complexity Low_complexity 1 23 0 1252 122 0 0 chr1 7356540 7356712 -274836952 - AluSg/x SINE Alu -5 307 136 2035 93 57 4 chr1 7356895 7357175 -274836489 + AluSx SINE Alu 2 296 -16 1826 156 3 29 chr1 7357324 7357632 -274836032 + AluJo SINE Alu 11 310 -2 2428 68 7 23 chr1 7357761 7358068 -274835596 - AluSq SINE Alu -10 303 2 340 308 121 26 chr1 7359660 7359730 -274833934 + L2 LINE L2 1225 1287 -2027 2465 87 0 3 chr1 7359730 7360039 -274833625 - AluSx SINE Alu -4 308 1 340 308 121 26 chr1 7360039 7360241 -274833423 + L2 LINE L2 1287 1523 -1791 720 282 115 27 chr1 7360244 7360574 -274833090 + L2 LINE L2 2187 2545 -769 310 29 0 0 chr1 7360574 7360609 -274833055 + U2 snRNA snRNA 1 35 -153 239 235 37 0 chr1 7360664 7360745 -274832919 + L2 LINE L2 2605 2688 -626 2158 123 13 0 chr1 7360777 7361077 -274832587 + AluSx SINE Alu 1 304 -8 1111 245 21 24 chr1 7361089 7361379 -274832285 + L1MC4 LINE L1 6703 6991 -1051 351 294 8 84 chr1 7361409 7361647 -274832017 + L1MC5 LINE L1 7709 7928 -33 653 270 101 50 chr1 7361716 7362160 -274831504 + L2 LINE L2 2837 3303 -10 251 233 0 22 chr1 7362455 7362545 -274831119 + (TATAA)n Simple_repeat Simple_repeat 3 90 0 23 33 0 0 chr1 7362714 7362744 -274830920 + AT_rich Low_complexity Low_complexity 1 30 0 2211 106 0 20 chr1 7362882 7363185 -274830479 - AluSc SINE Alu -12 297 1 2634 77 41 6 chr1 7364950 7365312 -274828352 + THE1C LTR MaLR 1 375 0 10315 112 39 9 chr1 7365312 7366846 -274826818 + THE1C-int LTR MaLR 1 1580 0 2655 91 19 16 chr1 7366846 7367220 -274826444 + THE1C LTR MaLR 1 375 0 200 360 47 0 chr1 7367334 7367420 -274826244 + L2 LINE L2 3178 3267 -5 537 184 43 43 chr1 7367676 7367781 -274825883 + L1MB2 LINE L1 6026 6133 -38 2425 116 11 27 chr1 7367781 7368151 -274825513 - THE1B LTR MaLR 0 364 1 537 184 43 43 chr1 7368151 7368186 -274825478 + L1MB2 LINE L1 6132 6166 -5 24 0 0 0 chr1 7368233 7368257 -274825407 + AT_rich Low_complexity Low_complexity 1 24 0 2149 116 3 16 chr1 7368467 7368770 -274824894 - AluSx SINE Alu -13 299 1 2491 45 3 0 chr1 7371130 7371417 -274822247 - AluY SINE Alu -23 288 1 210 248 0 40 chr1 7372973 7373074 -274820590 + (CCCG)n Simple_repeat Simple_repeat 4 100 0 22 80 0 0 chr1 7373105 7373155 -274820509 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 7373247 7373270 -274820394 + GC_rich Low_complexity Low_complexity 1 23 0 437 250 33 33 chr1 7373559 7373739 -274819925 + G-rich Low_complexity Low_complexity 1 180 0 1711 161 28 14 chr1 7374067 7374358 -274819306 - AluSx SINE Alu -17 295 1 256 271 146 58 chr1 7374744 7375073 -274818591 - L2 LINE L2 -3 3310 2953 210 305 57 9 chr1 7375324 7375429 -274818235 - L2 LINE L2 -433 2881 2772 614 231 139 24 chr1 7378137 7378167 -274815497 - MIR SINE MIR -26 236 211 2543 71 0 0 chr1 7378167 7378478 -274815186 - AluY SINE Alu 0 311 1 614 231 139 24 chr1 7378478 7378509 -274815155 - MIR SINE MIR -51 211 185 189 0 0 0 chr1 7378509 7378530 -274815134 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 614 231 139 24 chr1 7378530 7378675 -274814989 - MIR SINE MIR -77 185 5 1659 134 119 11 chr1 7378842 7379111 -274814553 - AluJo SINE Alu -14 298 1 2055 116 0 14 chr1 7380281 7380575 -274813089 + AluSx SINE Alu 1 290 -22 2715 201 42 8 chr1 7380676 7381289 -274812375 + L1MB5 LINE L1 3937 4570 -1576 4340 181 55 8 chr1 7381290 7381743 -274811921 + L1MB5 LINE L1 4721 5151 -1023 2213 110 3 3 chr1 7381743 7382053 -274811611 + AluSq SINE Alu 1 310 -3 4340 181 55 8 chr1 7382053 7382999 -274810665 + L1MB5 LINE L1 5151 6174 0 2260 102 3 3 chr1 7384480 7384785 -274808879 - AluSq SINE Alu -8 305 1 181 197 30 91 chr1 7384953 7385019 -274808645 + L2 LINE L2 3179 3240 -32 368 275 176 6 chr1 7385145 7385327 -274808337 - MIR SINE MIR -48 214 2 213 279 22 29 chr1 7386087 7386223 -274807441 + (CGGGG)n Simple_repeat Simple_repeat 4 138 0 23 0 0 0 chr1 7389416 7389439 -274804225 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr1 7390316 7390339 -274803325 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 300 111 0 0 chr1 7390770 7390815 -274802849 + (TG)n Simple_repeat Simple_repeat 2 46 0 2485 57 3 3 chr1 7391346 7391646 -274802018 - AluY SINE Alu -11 300 1 2339 94 0 3 chr1 7392418 7392715 -274800949 - AluSx SINE Alu -16 296 1 24 0 0 0 chr1 7393166 7393190 -274800474 + AT_rich Low_complexity Low_complexity 1 24 0 512 331 97 6 chr1 7394189 7394364 -274799300 - MIR SINE MIR -55 207 17 1407 187 8 12 chr1 7395258 7395509 -274798155 - AluJo SINE Alu -48 264 15 813 145 17 0 chr1 7398217 7398360 -274795304 - AluJb SINE Alu 0 308 164 2600 46 0 0 chr1 7398436 7398738 -274794926 - AluY SINE Alu -9 302 1 1841 92 114 7 chr1 7399636 7399907 -274793757 - AluSg SINE Alu -10 300 1 1128 221 18 9 chr1 7399983 7400200 -274793464 + MER58A DNA MER1_type 6 224 0 22 56 0 0 chr1 7400458 7400494 -274793170 + AT_rich Low_complexity Low_complexity 1 36 0 1817 160 4 0 chr1 7400516 7400825 -274792839 - AluJo SINE Alu 0 310 1 2441 91 0 3 chr1 7402039 7402348 -274791316 - AluSx SINE Alu -4 308 1 1705 102 16 20 chr1 7405445 7405689 -274787975 + MER75B DNA T2_type 1 243 0 327 284 89 0 chr1 7408374 7408509 -274785155 + MIR SINE MIR 101 251 -11 535 205 116 9 chr1 7408996 7409108 -274784556 - FLAM_A SINE Alu -9 124 1 315 0 0 0 chr1 7409118 7409153 -274784511 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2363 88 3 0 chr1 7409180 7409485 -274784179 + AluSx SINE Alu 1 306 -6 2199 112 3 10 chr1 7410455 7410758 -274782906 + AluSx SINE Alu 1 301 -11 805 196 0 0 chr1 7410967 7411105 -274782559 + L1MB4 LINE L1 6036 6173 -7 2312 97 3 3 chr1 7411849 7412148 -274781516 - AluSx SINE Alu -13 299 1 219 229 0 49 chr1 7412565 7412626 -274781038 - L3 LINE CR1 -3 1574 1517 2357 102 0 0 chr1 7412960 7413263 -274780401 + AluSx SINE Alu 1 303 -9 2580 64 0 3 chr1 7413265 7413577 -274780087 + AluY SINE Alu 1 311 0 1031 269 70 18 chr1 7413727 7414077 -274779587 + L1MB8 LINE L1 5808 6177 -1 240 132 0 0 chr1 7414104 7414142 -274779522 + L1MB7 LINE L1 6138 6175 -9 25 31 0 0 chr1 7414205 7414237 -274779427 + AT_rich Low_complexity Low_complexity 1 32 0 1713 136 0 79 chr1 7414238 7414554 -274779110 + AluSx SINE Alu 1 291 -21 206 164 15 45 chr1 7414968 7415035 -274778629 + (TA)n Simple_repeat Simple_repeat 2 66 0 205 216 0 0 chr1 7415242 7415279 -274778385 + (TA)n Simple_repeat Simple_repeat 1 37 0 202 270 0 34 chr1 7415299 7415388 -274778276 + T-rich Low_complexity Low_complexity 5 90 0 25 0 0 0 chr1 7415422 7415447 -274778217 + AT_rich Low_complexity Low_complexity 1 25 0 672 112 0 0 chr1 7415456 7415539 -274778125 + AluY SINE Alu 2 85 -221 1676 113 0 17 chr1 7415539 7415779 -274777885 - AluSq SINE Alu -77 236 1 2467 55 3 0 chr1 7415817 7416110 -274777554 - AluY SINE Alu -17 294 1 337 172 0 0 chr1 7416643 7416701 -274776963 - Charlie5 DNA MER1_type -2504 108 51 914 245 46 9 chr1 7416986 7417202 -274776462 + MER58A DNA MER1_type 1 224 0 620 76 0 0 chr1 7417261 7417340 -274776324 + THE1B LTR MaLR 1 79 -285 617 89 0 0 chr1 7417359 7417438 -274776226 + THE1B LTR MaLR 1 79 -285 592 65 26 0 chr1 7417457 7417534 -274776130 + THE1B LTR MaLR 1 79 -285 2351 119 39 33 chr1 7417553 7417914 -274775750 + THE1B LTR MaLR 1 363 -1 866 131 46 0 chr1 7421187 7421317 -274772347 + AluJb SINE Alu 1 136 -176 1958 136 7 16 chr1 7421317 7421627 -274772037 + AluJb SINE Alu 1 307 -5 840 120 0 0 chr1 7421919 7422036 -274771628 - AluSx SINE Alu -2 307 191 935 118 15 0 chr1 7422040 7422176 -274771488 - AluSx SINE Alu -174 138 1 2192 104 7 0 chr1 7423145 7423442 -274770222 + AluSx SINE Alu 1 299 -13 1915 159 0 25 chr1 7424166 7424480 -274769184 - AluJb SINE Alu -6 306 1 22 35 0 0 chr1 7425287 7425316 -274768348 + AT_rich Low_complexity Low_complexity 1 29 0 1533 158 68 32 chr1 7425510 7425788 -274767876 - AluJb SINE Alu -24 288 1 2247 126 0 0 chr1 7425791 7426100 -274767564 - AluSg SINE Alu -1 309 1 258 130 14 29 chr1 7426393 7426462 -274767202 + (TA)n Simple_repeat Simple_repeat 2 69 0 189 0 0 0 chr1 7426462 7426483 -274767181 + (GA)n Simple_repeat Simple_repeat 2 22 0 2119 108 3 11 chr1 7426490 7426777 -274766887 - AluSx SINE Alu -27 285 1 216 266 123 39 chr1 7426999 7427153 -274766511 - L2 LINE L2 -360 2954 2788 * 470 218 135 53 chr1 7427118 7427288 -274766376 + MIR SINE MIR 35 218 -44 618 262 14 7 chr1 7427564 7427709 -274765955 - MIR SINE MIR -10 252 107 2175 113 13 10 chr1 7427976 7428277 -274765387 + AluSx SINE Alu 1 302 -10 255 182 141 81 chr1 7429803 7429902 -274763762 - L2 LINE L2 0 3313 3209 2679 47 0 0 chr1 7429970 7430270 -274763394 + AluY SINE Alu 1 300 -11 705 177 152 0 chr1 7431564 7431728 -274761936 - MER5A DNA MER1_type 0 189 1 472 208 82 19 chr1 7432374 7432549 -274761115 + MIR SINE MIR 13 202 -57 2310 73 45 0 chr1 7432554 7432841 -274760823 - AluY SINE Alu -11 300 1 3026 202 142 94 chr1 7432932 7433273 -274760391 - L1MC3 LINE L1 -3 7782 7459 2191 107 3 27 chr1 7433273 7433572 -274760092 + AluSx SINE Alu 1 292 -20 3026 202 142 94 chr1 7433572 7433812 -274759852 - L1MC3 LINE L1 -326 7459 7232 308 286 24 0 chr1 7433812 7433896 -274759768 - MLT1F1 LTR MaLR -447 120 35 3026 202 142 94 chr1 7433896 7434454 -274759210 - L1MC3 LINE L1 -553 7232 6500 757 139 0 31 chr1 7434461 7434590 -274759074 - FLAM_C SINE Alu -7 126 2 1018 102 0 0 chr1 7435480 7435607 -274758057 + AluSq/x SINE Alu 3 129 -183 387 119 0 0 chr1 7435607 7435666 -274757998 + Alu SINE Alu 242 300 0 542 293 129 0 chr1 7435934 7436159 -274757505 - MIR SINE MIR 0 262 9 236 173 269 0 chr1 7436250 7436302 -274757362 + L2 LINE L2 3191 3256 -57 2275 121 3 0 chr1 7436716 7437022 -274756642 + AluSx SINE Alu 6 312 0 2058 125 3 3 chr1 7438548 7438837 -274754827 + AluSx SINE Alu 14 302 -10 194 216 0 0 chr1 7439109 7439146 -274754518 - L2 LINE L2 -4 3309 3273 206 284 15 15 chr1 7439185 7439252 -274754412 - L2 LINE L2 -20 3252 3186 407 319 0 9 chr1 7439351 7439467 -274754197 + L2 LINE L2 3156 3270 -2 1962 133 66 3 chr1 7439642 7439928 -274753736 - AluJb SINE Alu -8 304 1 429 227 36 0 chr1 7439933 7440043 -274753621 - L1MA8 LINE L1 -1 6290 6177 2697 207 16 0 chr1 7440099 7440644 -274753020 - L1MA8 LINE L1 -118 6173 5620 2065 119 14 14 chr1 7441411 7441704 -274751960 + AluSx SINE Alu 1 293 -19 2389 120 8 6 chr1 7443168 7443526 -274750138 + THE1B LTR MaLR 1 359 -5 1782 181 7 0 chr1 7443614 7443906 -274749758 + AluJb SINE Alu 1 294 -18 1586 166 61 32 chr1 7444859 7445203 -274748461 + MLT1A1 LTR MaLR 1 354 -11 730 274 106 64 chr1 7445218 7445606 -274748058 + MLT1K LTR MaLR 4 415 -61 2025 144 0 10 chr1 7445606 7445904 -274747760 - AluJo SINE Alu -5 307 13 730 274 106 64 chr1 7445904 7445967 -274747697 + MLT1K LTR MaLR 415 474 -2 495 199 130 15 chr1 7446256 7446387 -274747277 + MER112 DNA MER1_type 2 147 -113 201 343 57 0 chr1 7446447 7446517 -274747147 - MIR SINE MIR -86 122 49 959 172 12 18 chr1 7447722 7447882 -274745782 - AluJo/FRAM SINE Alu -16 296 136 2087 156 0 0 chr1 7447882 7448183 -274745481 - AluJb SINE Alu -11 301 1 1973 122 4 4 chr1 7448571 7448842 -274744822 + AluJb SINE Alu 17 287 -25 2383 93 3 0 chr1 7449048 7449348 -274744316 + AluSg SINE Alu 1 301 -9 44 46 0 0 chr1 7450658 7450723 -274742941 + GC_rich Low_complexity Low_complexity 1 65 0 1223 173 90 61 chr1 7451919 7452110 -274741554 - AluJb SINE Alu -9 303 99 1983 128 29 0 chr1 7452110 7452404 -274741260 + AluSq SINE Alu 1 302 0 1223 173 90 61 chr1 7452404 7452489 -274741175 - AluJb SINE Alu -213 99 18 474 204 62 0 chr1 7452489 7452602 -274741062 + MIR SINE MIR 45 164 -98 321 153 176 0 chr1 7452918 7453049 -274740615 - AluSg/x SINE Alu 0 302 149 205 226 0 65 chr1 7453179 7453241 -274740423 + L2 LINE L2 3207 3264 -8 198 0 0 0 chr1 7453436 7453458 -274740206 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2051 131 13 29 chr1 7454070 7454376 -274739288 + AluJb SINE Alu 1 301 -11 268 372 0 0 chr1 7454553 7454639 -274739025 - MIR SINE MIR -121 141 56 489 184 0 0 chr1 7454746 7454833 -274738831 - AluJb SINE Alu -16 296 210 936 230 107 47 chr1 7454938 7455320 -274738344 + MLT1I LTR MaLR 3 407 -2 620 210 52 19 chr1 7455477 7456614 -274737050 + L1MB8 LINE L1 4864 6173 -11 307 176 92 114 chr1 7457186 7457317 -274736347 + MIR3 SINE MIR 30 157 -51 1423 130 18 0 chr1 7457322 7457545 -274736119 - MER30 DNA MER1_type 0 230 4 250 296 23 23 chr1 7457763 7457851 -274735813 + MLT1H LTR MaLR 454 541 -8 322 273 117 31 chr1 7458261 7458389 -274735275 + MIR SINE MIR 9 147 -115 23 0 0 0 chr1 7459206 7459229 -274734435 + AT_rich Low_complexity Low_complexity 1 23 0 2217 113 7 3 chr1 7459231 7459540 -274734124 + AluSg SINE Alu 1 310 0 328 188 0 31 chr1 7461642 7461706 -274731958 + MER77 LTR ERV1 54 115 -490 1504 217 84 13 chr1 7461886 7462278 -274731386 + MER77 LTR ERV1 179 598 -7 2028 131 50 34 chr1 7462348 7462706 -274730958 + THE1B LTR MaLR 1 364 0 216 149 0 0 chr1 7463227 7463274 -274730390 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 377 85 0 17 chr1 7463769 7463828 -274729836 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 214 274 116 0 chr1 7463828 7463923 -274729741 - L2 LINE L2 -9 3263 3158 189 74 0 0 chr1 7464006 7464033 -274729631 + (TC)n Simple_repeat Simple_repeat 2 28 0 476 325 160 23 chr1 7464242 7464842 -274728822 + L2 LINE L2 2585 3270 -2 192 275 50 12 chr1 7464926 7465006 -274728658 + MIR SINE MIR 6 88 -174 2326 87 0 17 chr1 7465595 7465893 -274727771 - AluSq SINE Alu -16 297 5 215 308 165 0 chr1 7465975 7466108 -274727556 + MIR3 SINE MIR 3 157 -51 2203 110 7 17 chr1 7466180 7466481 -274727183 - AluJb SINE Alu -14 298 1 2223 116 0 16 chr1 7466490 7466793 -274726871 - AluSq SINE Alu -15 298 1 2295 109 20 0 chr1 7467630 7467934 -274725730 + AluSx SINE Alu 1 310 -2 180 319 96 0 chr1 7468489 7468583 -274725081 + L2 LINE L2 2874 2976 -338 1111 332 97 23 chr1 7468596 7469828 -274723836 + L2 LINE L2 1965 3297 -16 902 235 79 59 chr1 7471187 7471579 -274722085 + MLT1C LTR MaLR 59 458 -9 2461 64 0 35 chr1 7472743 7473056 -274720608 - AluY SINE Alu -9 302 1 265 240 170 10 chr1 7474684 7474784 -274718880 - L2 LINE L2 -3 3269 3154 198 0 0 0 chr1 7475062 7475084 -274718580 + (CTG)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 7475406 7475428 -274718236 + GC_rich Low_complexity Low_complexity 1 22 0 242 277 213 0 chr1 7478958 7479052 -274714612 + L2 LINE L2 3198 3311 -2 319 258 205 7 chr1 7480183 7480334 -274713330 + L2 LINE L2 2449 2629 -685 666 302 67 57 chr1 7480504 7481167 -274712497 + L2 LINE L2 2624 3309 -4 2101 112 18 0 chr1 7481194 7481510 -274712154 - AluSx SINE Alu 0 312 1 194 248 66 109 chr1 7482066 7482203 -274711461 + L2 LINE L2 3142 3272 0 258 220 64 37 chr1 7482664 7482773 -274710891 - MIR SINE MIR -67 141 30 2135 126 7 0 chr1 7483290 7483591 -274710073 + AluSx SINE Alu 5 307 -5 336 307 60 13 chr1 7484047 7484197 -274709467 - L2 LINE L2 0 3272 3116 291 159 76 53 chr1 7484442 7484574 -274709090 + LTR33 LTR ERVL 22 156 -365 296 218 0 0 chr1 7484838 7484893 -274708771 - MIR SINE MIR -68 140 86 256 259 83 19 chr1 7486814 7486922 -274706742 + MIR SINE MIR 16 130 -78 422 18 18 0 chr1 7487563 7487618 -274706046 + (TG)n Simple_repeat Simple_repeat 2 57 0 198 329 98 18 chr1 7487745 7487909 -274705755 - MIR3 SINE MIR -6 202 26 207 148 0 74 chr1 7488546 7488600 -274705064 - MIR3 SINE MIR -49 159 110 2052 123 0 0 chr1 7488818 7489134 -274704530 + AluSq SINE Alu 1 316 0 2469 82 7 3 chr1 7489815 7490121 -274703543 - AluSq SINE Alu -6 307 1 1678 200 0 3 chr1 7490275 7490575 -274703089 - AluJb SINE Alu -13 299 1 200 214 18 0 chr1 7492669 7492725 -274700939 + (CA)n Simple_repeat Simple_repeat 2 58 0 2063 131 6 10 chr1 7493996 7494308 -274699356 - AluSx SINE Alu -1 311 1 2305 116 7 0 chr1 7494338 7494648 -274699016 - AluSx SINE Alu 0 312 1 1764 164 0 50 chr1 7494651 7494969 -274698695 - AluJo SINE Alu -10 302 1 1431 93 0 6 chr1 7495067 7495250 -274698414 - AluSx SINE Alu -11 301 120 1971 91 4 0 chr1 7495250 7495502 -274698162 - AluSq SINE Alu -1 312 60 278 146 427 0 chr1 7495851 7495933 -274697731 - Charlie1 DNA MER1_type -3 2758 2642 1964 114 10 40 chr1 7495937 7496236 -274697428 - AluSx SINE Alu -22 290 1 953 146 0 0 chr1 7496236 7496366 -274697298 - AluSx SINE Alu -178 135 6 311 65 0 0 chr1 7496372 7496418 -274697246 + MADE1 DNA Mariner 35 80 0 1593 159 31 31 chr1 7496523 7496813 -274696851 - AluJo SINE Alu -22 290 1 192 152 0 0 chr1 7496985 7497018 -274696646 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2417 60 0 0 chr1 7497030 7497342 -274696322 - AluSq SINE Alu 0 312 1 1719 193 0 13 chr1 7498783 7499084 -274694580 - AluJo SINE Alu -15 297 1 2322 92 3 0 chr1 7499115 7499408 -274694256 + AluSg SINE Alu 1 294 -16 254 312 72 8 chr1 7499748 7499873 -274693791 + L1MC/D LINE L1 5727 5859 -1949 2063 156 0 10 chr1 7500176 7500490 -274693174 + AluSx SINE Alu 1 311 -1 2228 125 16 0 chr1 7500659 7500964 -274692700 - AluSg SINE Alu 0 310 1 1719 188 0 7 chr1 7501063 7501355 -274692309 - AluJo SINE Alu -22 290 1 4382 111 33 6 chr1 7501504 7502195 -274691469 + L1MA5A LINE L1 5587 6296 -1 1726 143 19 76 chr1 7502262 7502576 -274691088 - AluJo SINE Alu -16 296 1 945 198 48 0 chr1 7503003 7503190 -274690474 + AluJb SINE Alu 113 308 -4 277 260 0 0 chr1 7503286 7503359 -274690305 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 184 312 117 0 chr1 7503359 7503436 -274690228 - L2 LINE L2 -19 3294 3209 983 176 0 0 chr1 7503750 7503898 -274689766 - FRAM SINE Alu -30 146 1 326 267 43 26 chr1 7504016 7504132 -274689532 - MER94 DNA DNA -16 118 1 431 332 98 4 chr1 7504190 7504467 -274689197 + L1MC/D LINE L1 5409 5711 -2097 734 233 158 0 chr1 7504578 7504780 -274688884 + MIR SINE MIR 8 241 -21 2238 106 7 3 chr1 7504879 7505171 -274688493 + AluSg1 SINE Alu 1 293 -16 2008 128 30 3 chr1 7505316 7505620 -274688044 + AluSx SINE Alu 1 312 0 1711 164 39 4 chr1 7505634 7505915 -274687749 + AluJb SINE Alu 7 297 -15 21 0 0 0 chr1 7506231 7506252 -274687412 + AT_rich Low_complexity Low_complexity 1 21 0 180 213 75 150 chr1 7507784 7507864 -274685800 + L2 LINE L2 3222 3295 -18 1120 171 25 25 chr1 7507906 7508145 -274685519 - L1MA4 LINE L1 -8 6292 6054 711 83 148 0 chr1 7508145 7508253 -274685411 + MER84 LTR ERVI 1 124 -383 823 70 0 0 chr1 7508253 7508368 -274685296 - MER84-int LTR ERV1 -3598 1356 1242 1172 71 88 6 chr1 7508368 7508538 -274685126 + MER84 LTR ERVI 324 507 0 3527 139 83 27 chr1 7508547 7508910 -274684754 - L1MA4 LINE L1 -257 6043 5702 2142 141 3 0 chr1 7508910 7509215 -274684449 - AluSx SINE Alu -6 306 1 3527 139 83 27 chr1 7509215 7509802 -274683862 - L1MA4 LINE L1 -598 5702 5044 2228 117 7 0 chr1 7509802 7510111 -274683553 - AluSx SINE Alu -1 311 1 2414 115 0 0 chr1 7510138 7510450 -274683214 - AluSx SINE Alu 0 312 1 230 238 181 29 chr1 7512045 7512150 -274681514 + L2 LINE L2 3190 3310 -3 2008 148 3 3 chr1 7513031 7513336 -274680328 + AluJb SINE Alu 1 305 -7 576 298 137 24 chr1 7513515 7513807 -274679857 + L2 LINE L2 2989 3313 0 270 317 36 3 chr1 7513819 7513942 -274679722 + MIR SINE MIR 6 140 -68 412 211 128 51 chr1 7514071 7514227 -274679437 + MIR SINE MIR 95 262 0 824 249 86 20 chr1 7514710 7514955 -274678709 + MIR SINE MIR 2 262 0 2242 102 31 0 chr1 7515765 7516058 -274677606 + AluSp SINE Alu 1 302 -11 192 40 0 0 chr1 7516062 7516087 -274677577 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 274 306 174 15 chr1 7517597 7517793 -274675871 - L2 LINE L2 -898 2416 2190 27 0 0 0 chr1 7518218 7518245 -274675419 + GC_rich Low_complexity Low_complexity 1 27 0 411 188 188 62 chr1 7519537 7519665 -274673999 - L2 LINE L2 -2 3270 3127 363 309 216 10 chr1 7525530 7525724 -274667940 + MIR SINE MIR 17 250 -12 340 309 147 16 chr1 7526134 7526325 -274667339 - L2 LINE L2 -550 2764 2549 2073 100 0 45 chr1 7526982 7527291 -274666373 - AluSp SINE Alu -18 295 1 197 255 0 21 chr1 7527317 7527364 -274666300 + MIR SINE MIR 101 146 -62 2155 122 17 0 chr1 7527504 7527800 -274665864 - AluSx SINE Alu -11 301 1 1271 170 38 88 chr1 7527807 7528125 -274665539 - LTR9 LTR ERV1 -310 302 1 589 206 112 93 chr1 7528137 7528544 -274665120 + LTR48 LTR ERV1 173 787 0 1965 97 7 71 chr1 7528677 7529000 -274664664 + AluSx SINE Alu 1 280 -32 2042 111 0 28 chr1 7529359 7529678 -274663986 - AluSx SINE Alu 0 311 1 595 182 10 0 chr1 7529678 7529777 -274663887 - FLAM_A SINE Alu -8 134 35 436 141 33 11 chr1 7529786 7529878 -274663786 - AluSc SINE Alu -14 295 202 232 139 0 0 chr1 7629878 7629914 -274563750 - FLAM_A SINE Alu -96 36 1 319 79 0 111 chr1 7629914 7629977 -274563687 + L1MA8 LINE L1 6125 6180 -111 2323 91 0 0 chr1 7629990 7630276 -274563388 + AluY SINE Alu 1 286 -25 233 294 12 24 chr1 7630416 7630501 -274563163 - MLT1K LTR MaLR -494 94 11 2309 98 0 0 chr1 7630508 7630805 -274562859 + AluSx SINE Alu 1 297 -15 963 94 16 0 chr1 7630961 7631088 -274562576 - FRAM SINE Alu -30 146 18 1587 176 39 33 chr1 7631231 7631538 -274562126 + AluJb SINE Alu 1 309 -3 1273 157 0 32 chr1 7631553 7631770 -274561894 + AluJo SINE Alu 1 210 -102 1429 84 0 31 chr1 7631786 7631977 -274561687 - AluSq SINE Alu -52 261 77 889 143 27 27 chr1 7631979 7632126 -274561538 + AluJo/FRAM SINE Alu 156 302 -10 793 117 14 34 chr1 7632179 7632619 -274561045 + (TG)n Simple_repeat Simple_repeat 1 431 0 967 76 45 7 chr1 7632637 7633269 -274560395 + (TG)n Simple_repeat Simple_repeat 1 831 0 739 208 79 82 chr1 7633269 7633727 -274559937 - MLT2B1 LTR ERVL -40 449 1 739 293 18 71 chr1 7633797 7634094 -274559570 - ERVL LTR ERVL -2577 3187 2913 2501 78 0 0 chr1 7634094 7634403 -274559261 + AluSg SINE Alu 1 309 -1 739 293 18 71 chr1 7634403 7634487 -274559177 - ERVL LTR ERVL -2851 2913 2826 2514 58 0 0 chr1 7634611 7634904 -274558760 + AluY SINE Alu 1 293 -18 1854 148 11 0 chr1 7634903 7635181 -274558483 - AluJb SINE Alu -31 281 1 * 1521 155 0 0 chr1 7636227 7636453 -274557211 - AluJb SINE Alu -9 303 78 1904 112 94 0 chr1 7637065 7637342 -274556322 + AluSx SINE Alu 1 303 -9 304 181 24 0 chr1 7637441 7637524 -274556140 + (TA)n Simple_repeat Simple_repeat 2 86 0 303 28 0 0 chr1 7637575 7637611 -274556053 + (CA)n Simple_repeat Simple_repeat 2 37 0 938 159 62 46 chr1 7637620 7637918 -274555746 + MER21A LTR ERV1 34 356 -507 2139 103 0 0 chr1 7637942 7638215 -274555449 + AluSx SINE Alu 25 297 -15 1836 146 25 0 chr1 7638268 7638542 -274555122 - AluJb SINE Alu -31 281 1 2522 86 0 0 chr1 7639548 7639861 -274553803 + AluSq SINE Alu 1 313 0 295 308 75 51 chr1 7639870 7640084 -274553580 - L2 LINE L2 -530 2784 2566 1787 147 40 3 chr1 7640652 7640952 -274552712 + AluJb SINE Alu 1 311 -1 2511 70 0 3 chr1 7641417 7641718 -274551946 + AluSp SINE Alu 1 300 -13 1204 113 24 0 chr1 7641718 7641886 -274551778 + AluSp SINE Alu 134 305 -8 2709 94 13 8 chr1 7642039 7642412 -274551252 + THE1C LTR MaLR 1 375 0 3631 109 73 23 chr1 7642755 7642785 -274550879 + LTR24C LTR ERV1 1 28 -607 828 99 7 92 chr1 7642785 7642926 -274550738 + FLAM_C SINE Alu 5 133 0 3631 109 73 23 chr1 7642926 7643498 -274550166 + LTR24C LTR ERV1 28 633 -2 2290 103 0 3 chr1 7643572 7643874 -274549790 + AluSq SINE Alu 1 301 -12 385 136 61 0 chr1 7644022 7644088 -274549576 - Charlie4 DNA MER1_type -5 1956 1887 2106 103 17 3 chr1 7644095 7644386 -274549278 + AluSc SINE Alu 1 295 -14 1042 84 15 0 chr1 7644386 7644517 -274549147 + AluSq/x SINE Alu 1 133 -180 1869 126 27 33 chr1 7644632 7644933 -274548731 - AluSx SINE Alu -13 299 1 1978 135 17 7 chr1 7644962 7645258 -274548406 + AluY SINE Alu 1 299 -12 780 68 0 0 chr1 7645717 7645820 -274547844 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 484 173 0 17 chr1 7646017 7646116 -274547548 - L1MC4 LINE L1 0 8042 7848 207 319 87 0 chr1 7646188 7646257 -274547407 + MIR SINE MIR 71 145 -63 1094 168 84 26 chr1 7646427 7646653 -274547011 - AluJb SINE Alu -2 310 72 205 350 150 0 chr1 7647384 7647484 -274546180 + L2 LINE L2 3123 3237 -35 186 43 0 0 chr1 7647857 7647880 -274545784 + (T)n Simple_repeat Simple_repeat 1 23 0 2317 95 0 10 chr1 7647980 7648284 -274545380 - AluSc SINE Alu -6 303 3 483 33 0 0 chr1 7648597 7648658 -274545006 + (TG)n Simple_repeat Simple_repeat 2 62 0 414 0 0 0 chr1 7648722 7648768 -274544896 + (TG)n Simple_repeat Simple_repeat 1 46 0 2130 127 7 0 chr1 7649077 7649377 -274544287 + AluSx SINE Alu 1 302 -10 2266 64 0 0 chr1 7649378 7649645 -274544019 + AluY SINE Alu 38 304 -7 2030 154 28 11 chr1 7650092 7650448 -274543216 - THE1B LTR MaLR 0 364 3 1925 156 0 13 chr1 7653005 7653306 -274540358 + AluJb SINE Alu 1 297 -15 1420 221 7 29 chr1 7653585 7653893 -274539771 + AluJo SINE Alu 1 301 -1 445 168 262 54 chr1 7654198 7654347 -274539317 - MER58B DNA MER1_type 0 341 162 284 134 34 84 chr1 7654836 7654955 -274538709 + A-rich Low_complexity Low_complexity 4 116 0 1892 143 10 13 chr1 7655221 7655521 -274538143 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 7655721 7655742 -274537922 + AT_rich Low_complexity Low_complexity 1 21 0 403 272 7 51 chr1 7656136 7656293 -274537371 + MIR SINE MIR 49 197 -65 388 239 111 0 chr1 7656581 7656698 -274536966 + MER5C DNA MER1_type 1 130 -194 2703 100 0 14 chr1 7656765 7657134 -274536530 - THE1B LTR MaLR 0 364 1 274 161 32 48 chr1 7657233 7657295 -274536369 - MLT1J LTR MaLR -450 61 1 721 189 0 0 chr1 7657670 7657792 -274535872 - FLAM_C SINE Alu -16 127 6 1829 151 0 20 chr1 7657825 7658130 -274535534 + AluJb SINE Alu 1 299 -13 183 80 0 0 chr1 7658943 7658968 -274534696 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1974 220 53 19 chr1 7660256 7660729 -274532935 - LTR42 LTR ERVL 0 495 7 211 262 213 16 chr1 7660735 7660857 -274532807 + L2 LINE L2 3168 3313 0 2050 137 3 3 chr1 7660940 7661239 -274532425 - AluSx SINE Alu -13 299 1 2150 134 0 0 chr1 7661249 7661555 -274532109 - AluSx SINE Alu -6 306 1 455 217 25 17 chr1 7662270 7662390 -274531274 + L2 LINE L2 3193 3313 0 336 275 75 8 chr1 7663080 7663200 -274530464 - MIR SINE MIR -112 150 23 318 218 137 48 chr1 7663905 7664029 -274529635 - L1ME3A LINE L1 0 6170 6036 2116 247 96 50 chr1 7664168 7665191 -274528473 - L1MC5 LINE L1 -431 7530 6476 2009 128 10 7 chr1 7665232 7665529 -274528135 - AluSx SINE Alu -12 300 3 1520 181 40 14 chr1 7665845 7666121 -274527543 - AluJo SINE Alu -27 285 3 42 20 0 0 chr1 7666679 7666728 -274526936 + AT_rich Low_complexity Low_complexity 1 49 0 1221 117 6 0 chr1 7667657 7667828 -274525836 - AluSq SINE Alu -12 301 130 961 162 56 178 chr1 7667862 7668183 -274525481 + AluJo SINE Alu 1 282 -30 21 36 0 0 chr1 7668183 7668211 -274525453 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 7668436 7668459 -274525205 + AT_rich Low_complexity Low_complexity 1 23 0 1120 213 138 27 chr1 7668657 7669368 -274524296 + L1ME1 LINE L1 4826 5621 -543 1370 141 89 56 chr1 7669405 7669674 -274523990 + AluJb SINE Alu 11 288 -24 319 189 0 40 chr1 7669698 7669772 -274523892 + L1ME2 LINE L1 5978 6048 -116 2088 122 7 7 chr1 7670372 7670675 -274522989 - AluSx SINE Alu -9 303 1 2018 126 14 0 chr1 7672290 7672584 -274521080 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 7673160 7673190 -274520474 + AT_rich Low_complexity Low_complexity 1 30 0 2349 63 23 3 chr1 7673206 7673508 -274520156 - AluY SINE Alu -2 309 2 522 308 100 21 chr1 7673510 7673750 -274519914 - L1MC5 LINE L1 -2147 5661 5403 1207 249 84 40 chr1 7674171 7674708 -274518956 - L1MC4 LINE L1 -113 7695 7244 1383 158 83 18 chr1 7674708 7674834 -274518830 + AluJo SINE Alu 5 121 -191 252 0 0 0 chr1 7674834 7674862 -274518802 + (TA)n Simple_repeat Simple_repeat 2 29 0 1383 158 83 18 chr1 7674862 7675013 -274518651 + AluJo SINE Alu 121 300 -12 1207 249 84 40 chr1 7675013 7675097 -274518567 - L1MC4 LINE L1 -564 7244 7165 476 235 95 40 chr1 7675105 7675305 -274518359 - L1MC4 LINE L1 -958 7084 6874 877 259 114 21 chr1 7675469 7675801 -274517863 - L1ME3A LINE L1 -10 6160 5798 2146 55 0 12 chr1 7675801 7676056 -274517608 + AluY SINE Alu 52 303 -8 775 257 32 48 chr1 7676056 7676291 -274517373 + L1M4 LINE L1 2722 2952 -3194 1992 132 14 0 chr1 7676291 7676580 -274517084 + AluJb SINE Alu 1 293 -19 775 257 32 48 chr1 7676580 7676659 -274517005 + L1M4 LINE L1 2952 3031 -3115 422 358 59 4 chr1 7676775 7677029 -274516635 + L1ME1 LINE L1 5680 5947 -223 485 242 17 50 chr1 7677662 7677782 -274515882 + L2 LINE L2 3182 3297 -16 560 146 62 31 chr1 7678145 7678275 -274515389 + L1ME1 LINE L1 6027 6160 -6 1367 170 77 64 chr1 7679698 7680037 -274513627 + Charlie1b DNA MER1_type 57 405 -2356 2357 86 16 0 chr1 7680037 7680340 -274513324 - AluSc SINE Alu -1 308 1 1367 170 77 64 chr1 7680340 7680454 -274513210 + Charlie1b DNA MER1_type 405 516 -7 1715 209 0 0 chr1 7680491 7680787 -274512877 - AluJo SINE Alu -16 296 1 198 296 136 0 chr1 7681348 7681473 -274512191 - L3 LINE CR1 -710 867 726 325 96 19 180 chr1 7681479 7681636 -274512028 - MLT2B3 LTR ERVL 0 554 393 1284 196 151 16 chr1 7681636 7682013 -274511651 - MSTC LTR MaLR 0 428 1 * 2228 197 23 7 chr1 7682013 7682447 -274511217 - MLT2B3 LTR ERVL -107 447 7 190 235 0 39 chr1 7682577 7682628 -274511036 - MIR3 SINE MIR -32 176 128 2192 105 3 0 chr1 7683309 7683605 -274510059 + AluY SINE Alu 1 297 -14 2362 98 0 0 chr1 7683753 7684058 -274509606 - AluSg1 SINE Alu -4 305 1 2206 99 0 13 chr1 7684667 7684971 -274508693 - AluSq SINE Alu -11 302 3 2529 181 87 12 chr1 7685056 7685526 -274508138 - L1MA7 LINE L1 0 6291 5759 543 69 0 0 chr1 7685526 7685598 -274508066 + (CA)n Simple_repeat Simple_repeat 2 73 0 2529 181 87 12 chr1 7685598 7685769 -274507895 - L1MA7 LINE L1 -532 5759 5602 452 162 253 0 chr1 7685872 7685971 -274507693 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 1242 114 5 5 chr1 7685974 7686175 -274507489 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 1027 157 67 17 chr1 7687713 7687920 -274505744 + AluJo SINE Alu 96 311 0 740 188 91 23 chr1 7688314 7688490 -274505174 - MIR SINE MIR -54 208 21 323 324 153 0 chr1 7689701 7689877 -274503787 - MIR SINE MIR -6 256 54 1106 171 23 14 chr1 7690008 7690224 -274503440 + MER20 DNA MER1_type 1 218 -1 372 107 18 0 chr1 7690426 7690482 -274503182 - MER34C LTR ERV1 -492 93 37 1463 87 0 0 chr1 7691093 7691278 -274502386 - AluSp SINE Alu -6 307 123 2185 114 3 13 chr1 7691299 7691614 -274502050 + AluSx SINE Alu 1 312 0 290 305 28 21 chr1 7693148 7693289 -274500375 - MIR3 SINE MIR -53 155 14 205 205 0 0 chr1 7693329 7693368 -274500296 + T-rich Low_complexity Low_complexity 1 39 0 336 193 0 0 chr1 7694247 7694304 -274499360 + AluJ/FLAM SINE Alu 1 57 -245 274 270 27 18 chr1 7694363 7694474 -274499190 + L1MC4 LINE L1 7914 8025 -17 1070 195 69 8 chr1 7695014 7695275 -274498389 - MER58 DNA MER1_type -2140 280 4 1983 162 26 0 chr1 7695690 7695993 -274497671 - AluJo SINE Alu -1 311 1 2079 107 3 30 chr1 7696203 7696502 -274497162 - AluSx SINE Alu -21 291 1 219 286 79 0 chr1 7698618 7698681 -274494983 - MIR SINE MIR -161 101 34 2355 83 0 3 chr1 7699550 7699873 -274493791 + AluSx SINE Alu 1 312 0 6027 239 100 29 chr1 7700203 7701396 -274492268 - L1MC4a LINE L1 -1 7807 6700 2124 114 0 7 chr1 7701396 7701695 -274491969 - AluSg1 SINE Alu -12 297 1 6027 239 100 29 chr1 7701695 7702872 -274490792 - L1MC4a LINE L1 -1108 6700 5269 382 305 58 13 chr1 7702894 7703048 -274490616 - L1MC4a LINE L1 -913 5233 5073 256 273 76 30 chr1 7703273 7703471 -274490193 - L1P LINE L1 -1488 4658 4452 2168 127 13 0 chr1 7703524 7703832 -274489832 - AluSx SINE Alu 0 312 1 205 0 54 54 chr1 7704080 7704117 -274489547 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1723 189 30 0 chr1 7704119 7704415 -274489249 + AluJb SINE Alu 3 307 -5 2276 113 0 3 chr1 7704415 7704715 -274488949 + AluSg SINE Alu 1 299 -11 44 0 0 0 chr1 7704715 7704759 -274488905 + AT_rich Low_complexity Low_complexity 1 44 0 238 304 108 0 chr1 7704854 7704956 -274488708 + Charlie2a DNA MER1_type 16 128 -2654 517 296 101 20 chr1 7705039 7705384 -274488280 + Charlie2a DNA MER1_type 262 634 -2228 1155 201 145 15 chr1 7705653 7706047 -274487617 - L1ME2 LINE L1 -24 6140 5696 333 132 9 0 chr1 7706167 7706223 -274487441 + L1M4 LINE L1 3773 3832 -2314 337 218 135 23 chr1 7706320 7706453 -274487211 + L1M4 LINE L1 4020 4167 -1979 812 190 71 16 chr1 7706619 7706803 -274486861 + MER20 DNA MER1_type 26 219 0 453 183 11 21 chr1 7707282 7707329 -274486335 + MER3 DNA MER1_type 2 47 -162 391 204 7 120 chr1 7707329 7707471 -274486193 - MER3 DNA MER1_type 0 209 84 929 176 7 0 chr1 7707592 7707740 -274485924 + AluJo SINE Alu 1 149 -163 638 186 0 25 chr1 7707740 7707858 -274485806 - AluJb SINE Alu -197 115 1 240 35 0 0 chr1 7709236 7709265 -274484399 + (TG)n Simple_repeat Simple_repeat 2 30 0 1599 147 0 63 chr1 7709985 7710285 -274483379 + AluJb SINE Alu 1 281 -31 235 0 57 0 chr1 7710293 7710328 -274483336 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2245 116 3 3 chr1 7710694 7711004 -274482660 + AluSg SINE Alu 1 310 0 803 287 40 12 chr1 7712812 7713140 -274480524 + MER46C DNA MER2_type 2 338 0 1650 191 0 3 chr1 7713178 7713476 -274480188 - AluJb SINE Alu -14 298 2 324 272 48 16 chr1 7714049 7714174 -274479490 + MIR SINE MIR 31 159 -103 2428 71 0 0 chr1 7714276 7714572 -274479092 - AluSc SINE Alu -13 296 1 217 286 0 0 chr1 7714596 7714645 -274479019 + CT-rich Low_complexity Low_complexity 3 51 0 1592 218 102 54 chr1 7714883 7715241 -274478423 - L1MC4 LINE L1 -149 7893 7491 640 186 0 161 chr1 7715241 7715440 -274478224 - FAM SINE Alu -8 167 1 1592 218 102 54 chr1 7715440 7715706 -274477958 - L1MC4 LINE L1 -551 7491 7239 613 262 87 12 chr1 7715707 7716116 -274477548 - L1MC4 LINE L1 -961 7081 6469 409 328 64 23 chr1 7716799 7717064 -274476600 + L1MEd LINE L1 538 813 -5306 418 286 135 33 chr1 7717074 7717319 -274476345 - MLT1J LTR MaLR -55 456 187 1930 126 7 48 chr1 7717366 7717503 -274476161 + AluSx SINE Alu 1 121 -191 2214 100 3 10 chr1 7717503 7717802 -274475862 + AluSq SINE Alu 1 297 -16 1930 126 7 48 chr1 7717802 7717958 -274475706 + AluSx SINE Alu 121 282 -30 352 309 103 17 chr1 7718040 7718204 -274475460 + L1 LINE L1 3595 3768 -2378 1533 110 53 8 chr1 7718324 7718588 -274475076 - L1MA2 LINE L1 0 6304 6029 251 302 26 73 chr1 7718591 7718783 -274474881 + L1 LINE L1 3908 4090 -2056 1579 181 43 0 chr1 7718940 7719221 -274474443 - AluSx SINE Alu -15 297 5 846 95 0 0 chr1 7719264 7719390 -274474274 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2892 9 0 0 chr1 7719407 7719723 -274473941 + AluYb8 SINE Alu 1 316 -2 2306 82 0 35 chr1 7720798 7721113 -274472551 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 7721159 7721180 -274472484 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 11 33 chr1 7721209 7721299 -274472365 - L1MC4 LINE L1 -29 8013 7926 1062 150 0 0 chr1 7721351 7721524 -274472140 + MER46B DNA MER2_type 2 49 -187 1354 221 66 48 chr1 7721575 7721610 -274472054 - L1MC4 LINE L1 -98 7944 7911 824 180 97 61 chr1 7721610 7721838 -274471826 - MER46A DNA MER2_type 0 236 1 1354 221 66 48 chr1 7721838 7722317 -274471347 - L1MC4 LINE L1 -131 7911 7421 1720 137 19 60 chr1 7727185 7727500 -274466164 - AluJb SINE Alu -10 302 1 2255 110 0 3 chr1 7727510 7727810 -274465854 - AluSq SINE Alu -14 299 1 257 248 142 35 chr1 7728454 7728595 -274465069 + L2 LINE L2 3158 3313 0 415 250 132 48 chr1 7728604 7728832 -274464832 + MIR SINE MIR 14 260 -2 32 0 0 0 chr1 7728891 7728923 -274464741 + AT_rich Low_complexity Low_complexity 1 32 0 699 194 0 0 chr1 7728931 7729039 -274464625 - FLAM_C SINE Alu -34 109 2 198 0 0 0 chr1 7729623 7729645 -274464019 + (T)n Simple_repeat Simple_repeat 1 22 0 246 326 44 37 chr1 7730081 7730216 -274463448 + MIR3 SINE MIR 72 207 -1 220 200 0 0 chr1 7730300 7730345 -274463319 + T-rich Low_complexity Low_complexity 4 48 0 221 357 12 12 chr1 7730562 7730646 -274463018 - L2 LINE L2 -73 3199 3116 234 333 78 7 chr1 7730789 7730930 -274462734 - MIR SINE MIR -38 224 74 1092 145 12 6 chr1 7730959 7731131 -274462533 - AluJo SINE Alu -22 290 118 808 174 0 28 chr1 7731160 7731304 -274462360 - FLAM_C SINE Alu -2 141 2 207 100 0 0 chr1 7731445 7731475 -274462189 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 251 234 0 0 chr1 7731476 7731523 -274462141 - MER66A LTR ERV1 -142 336 290 237 179 45 60 chr1 7733201 7733268 -274460396 - L1MD3 LINE L1 -11 7984 7919 * 256 271 0 0 chr1 7733257 7733316 -274460348 - L1MD2 LINE L1 -103 6256 6198 958 234 102 0 chr1 7733319 7733575 -274460089 - L1MD2 LINE L1 -216 6143 5862 765 262 24 36 chr1 7733732 7733984 -274459680 + MIR SINE MIR 14 262 0 208 225 300 0 chr1 7734027 7734107 -274459557 + MIR SINE MIR 159 262 0 1734 149 19 38 chr1 7734150 7734465 -274459199 - AluSx SINE Alu -3 309 1 207 0 0 0 chr1 7734736 7734759 -274458905 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1690 118 110 0 chr1 7734761 7735024 -274458640 - AluSx SINE Alu -20 292 1 1517 151 61 29 chr1 7735026 7735304 -274458360 - AluJo SINE Alu -18 294 8 228 175 222 0 chr1 7735417 7735480 -274458184 + MIR SINE MIR 186 262 0 2092 128 6 6 chr1 7735639 7735952 -274457712 - AluSq SINE Alu 0 313 1 3900 194 69 35 chr1 7735993 7736594 -274457070 + Charlie1 DNA MER1_type 1682 2329 -432 1836 124 0 4 chr1 7736594 7736875 -274456789 - AluSq SINE Alu 0 308 29 3900 194 69 35 chr1 7736875 7737208 -274456456 + Charlie1 DNA MER1_type 2329 2649 -112 21 0 0 0 chr1 7737220 7737241 -274456423 + AT_rich Low_complexity Low_complexity 1 21 0 297 120 0 0 chr1 7737950 7738000 -274455664 + Charlie1 DNA MER1_type 2706 2755 -6 2986 6 0 0 chr1 7738067 7738385 -274455279 + AluYb8 SINE Alu 1 318 0 201 74 0 0 chr1 7738606 7738633 -274455031 + (A)n Simple_repeat Simple_repeat 1 27 0 765 189 8 0 chr1 7739350 7739477 -274454187 + FLAM_C SINE Alu 5 132 -1 309 178 22 22 chr1 7740278 7740368 -274453296 + CT-rich Low_complexity Low_complexity 1 90 0 1643 159 52 3 chr1 7740585 7740874 -274452790 - AluJo SINE Alu -9 303 1 347 197 45 0 chr1 7740875 7740941 -274452723 + L2 LINE L2 3232 3300 -13 447 68 0 0 chr1 7740941 7741000 -274452664 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1512 130 25 105 chr1 7741153 7741477 -274452187 + AluYb8 SINE Alu 1 298 -20 2064 148 52 27 chr1 7741927 7742331 -274451333 - L1MB3 LINE L1 -28 6155 5742 2228 117 3 3 chr1 7742361 7742669 -274450995 + AluSx SINE Alu 1 308 -4 2180 96 7 7 chr1 7742691 7742984 -274450680 + AluSx SINE Alu 1 293 -19 808 166 11 40 chr1 7743098 7743273 -274450391 - AluJb SINE Alu -6 306 137 433 242 45 32 chr1 7743450 7743607 -274450057 + MER104 DNA Tc2 6 164 -16 1782 156 25 0 chr1 7744581 7744856 -274448808 + AluJb SINE Alu 13 294 -18 1566 260 95 46 chr1 7744862 7745531 -274448133 - L1MC5 LINE L1 -36 7925 7215 2316 84 0 3 chr1 7745531 7745828 -274447836 - AluSg SINE Alu -14 296 1 1566 260 95 46 chr1 7745828 7745893 -274447771 - L1MC5 LINE L1 -746 7215 7155 779 281 38 61 chr1 7745958 7746643 -274447021 - L1MC5 LINE L1 -850 6958 6281 1888 232 56 52 chr1 7746716 7747262 -274446402 - L1MC5 LINE L1 -1862 5946 5394 6285 77 17 45 chr1 7747262 7748881 -274444783 - SVA Other Other -589 1386 213 1888 232 56 52 chr1 7748881 7748962 -274444702 - L1MC5 LINE L1 -2414 5394 5315 181 218 109 0 chr1 7749016 7749071 -274444593 - L2 LINE L2 -12 3260 3200 2150 101 0 3 chr1 7749110 7749438 -274444226 - AluSx SINE Alu 0 327 1 340 272 103 22 chr1 7749620 7749804 -274443860 + Charlie8 DNA MER1_type 15 213 -2204 367 218 26 0 chr1 7749861 7749939 -274443725 + MER33 DNA MER1_type 1 80 -244 339 224 0 0 chr1 7749941 7750017 -274443647 + MER33 DNA MER1_type 249 324 0 442 296 118 39 chr1 7750293 7750496 -274443168 - L1ME2 LINE L1 0 6164 5946 333 0 0 0 chr1 7750506 7750543 -274443121 + (TG)n Simple_repeat Simple_repeat 2 38 0 2458 103 0 0 chr1 7750552 7750862 -274442802 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 7750884 7750914 -274442750 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 2093 109 0 7 chr1 7750914 7751197 -274442467 - AluSg1 SINE Alu -28 281 1 1262 98 5 16 chr1 7752219 7752403 -274441261 + L1PA8 LINE L1 5991 6172 0 1202 148 0 68 chr1 7752757 7752994 -274440670 - AluJo SINE Alu 0 312 92 1419 188 90 4 chr1 7753106 7753383 -274440281 - AluJo SINE Alu -11 301 1 2211 118 10 0 chr1 7753666 7753963 -274439701 + AluSx SINE Alu 3 302 -10 351 244 44 67 chr1 7754483 7754539 -274439125 - MIR SINE MIR -48 214 158 2193 82 65 0 chr1 7754539 7754831 -274438833 - AluY SINE Alu 0 311 1 351 244 44 67 chr1 7754831 7754909 -274438755 - MIR SINE MIR -104 158 83 202 283 75 0 chr1 7755584 7755637 -274438027 - L3 LINE CR1 -21 1556 1500 238 189 257 27 chr1 7755991 7756065 -274437599 - MIR3 SINE MIR -25 183 93 1597 168 0 82 chr1 7756172 7756357 -274437307 - AluJb SINE Alu -11 301 153 1545 173 20 47 chr1 7756357 7756658 -274437006 - AluJb SINE Alu -19 293 1 1597 168 0 82 chr1 7756658 7756800 -274436864 - AluJb SINE Alu -159 153 1 1092 146 5 66 chr1 7757633 7757814 -274435850 - AluJb SINE Alu 0 312 140 2310 89 23 0 chr1 7757814 7758117 -274435547 - AluSp SINE Alu -3 310 1 1092 146 5 66 chr1 7758117 7758166 -274435498 - AluJb SINE Alu -172 140 90 3690 235 111 64 chr1 7758295 7758902 -274434762 - L1ME1 LINE L1 -6 6160 5583 2063 90 62 7 chr1 7758902 7759192 -274434472 - AluSc SINE Alu 0 309 4 3690 235 111 64 chr1 7759192 7759206 -274434458 - L1ME1 LINE L1 -583 5583 5571 2408 70 0 13 chr1 7759206 7759507 -274434157 - AluY SINE Alu -14 297 1 3690 235 111 64 chr1 7759507 7759894 -274433770 - L1ME1 LINE L1 -595 5571 5203 1595 154 41 69 chr1 7759894 7760213 -274433451 - AluJo SINE Alu -2 310 1 3690 235 111 64 chr1 7760213 7760733 -274432931 - L1ME1 LINE L1 -963 5203 4708 2353 110 0 0 chr1 7760733 7761042 -274432622 + AluSq SINE Alu 4 312 -1 3690 235 111 64 chr1 7761042 7761174 -274432490 - L1ME1 LINE L1 -1458 4708 4584 712 169 7 70 chr1 7761174 7761316 -274432348 - FLAM_A SINE Alu 0 133 1 3690 235 111 64 chr1 7761316 7761681 -274431983 - L1ME1 LINE L1 -1582 4584 4237 1701 174 37 0 chr1 7761681 7761975 -274431689 - AluJb SINE Alu -7 305 1 3690 235 111 64 chr1 7761975 7762490 -274431174 - L1ME1 LINE L1 -1929 4237 3492 207 100 0 0 chr1 7762490 7762520 -274431144 + (T)n Simple_repeat Simple_repeat 1 30 0 1957 244 136 30 chr1 7762555 7763178 -274430486 - L1ME1 LINE L1 -2885 3261 2705 2413 80 0 3 chr1 7763178 7763479 -274430185 + AluSc SINE Alu 1 300 -9 1957 244 136 30 chr1 7763479 7763866 -274429798 - L1ME1 LINE L1 -3441 2705 2144 2157 114 3 0 chr1 7763906 7764196 -274429468 - AluSp SINE Alu -22 291 1 2127 112 10 0 chr1 7764553 7764847 -274428817 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 7764848 7764879 -274428785 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 15 0 chr1 7765602 7765669 -274427995 + L2 LINE L2 3205 3272 0 24 67 0 0 chr1 7766373 7766418 -274427246 + AT_rich Low_complexity Low_complexity 1 45 0 2362 88 7 10 chr1 7766568 7766876 -274426788 - AluY SINE Alu -4 307 1 859 162 0 13 chr1 7767094 7767248 -274426416 - L1MB8 LINE L1 -190 5988 5837 267 300 150 46 chr1 7767264 7767591 -274426073 - L3 LINE CR1 -422 1155 795 377 278 31 0 chr1 7767648 7767745 -274425919 - MIR SINE MIR -18 244 145 2253 96 3 0 chr1 7767862 7768155 -274425509 + AluSc SINE Alu 1 294 -15 2319 111 0 0 chr1 7768540 7768837 -274424827 + AluSx SINE Alu 1 297 -15 2315 111 0 0 chr1 7768840 7769147 -274424517 + AluSg SINE Alu 3 309 -1 1287 234 122 20 chr1 7769443 7769901 -274423763 - MLT1D LTR MaLR 0 505 1 54 40 0 0 chr1 7769912 7769987 -274423677 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr1 7770024 7770048 -274423616 + AT_rich Low_complexity Low_complexity 1 24 0 800 168 0 0 chr1 7770048 7770173 -274423491 - FLAM_C SINE Alu -18 125 1 271 288 158 17 chr1 7772971 7773148 -274420516 + MIR SINE MIR 52 253 -9 2327 108 0 16 chr1 7773564 7773880 -274419784 - AluSx SINE Alu -1 311 1 2333 100 0 0 chr1 7773885 7774184 -274419480 - AluSx SINE Alu -13 299 1 217 235 123 12 chr1 7775863 7775944 -274417720 + L2 LINE L2 3182 3271 -1 2095 118 0 0 chr1 7777164 7777452 -274416212 + AluSq SINE Alu 1 288 -25 1597 186 10 3 chr1 7777462 7777758 -274415906 + AluJo SINE Alu 1 298 -14 949 174 60 5 chr1 7777763 7777964 -274415700 + AluJb SINE Alu 89 300 -12 297 164 75 15 chr1 7777975 7778042 -274415622 + L2 LINE L2 3201 3271 -1 2293 76 7 7 chr1 7778159 7778462 -274415202 + AluSc SINE Alu 1 303 -6 2067 86 38 3 chr1 7778723 7779013 -274414651 + AluSx SINE Alu 1 300 -12 1921 122 0 31 chr1 7779620 7779939 -274413725 - AluSg SINE Alu -1 309 1 744 278 5 5 chr1 7780145 7780336 -274413328 - MIR SINE MIR -59 203 13 1599 171 16 44 chr1 7780349 7780670 -274412994 - AluJb SINE Alu 0 312 1 32 43 0 0 chr1 7781064 7781110 -274412554 + AT_rich Low_complexity Low_complexity 1 46 0 2393 81 0 0 chr1 7781332 7781640 -274412024 + AluY SINE Alu 1 308 -3 203 231 154 51 chr1 7781725 7781842 -274411822 - L2 LINE L2 -5 3308 3180 296 235 59 0 chr1 7782093 7782161 -274411503 + L2 LINE L2 3190 3261 -52 500 232 120 21 chr1 7782758 7782900 -274410764 + MIR SINE MIR 44 199 -63 578 218 0 63 chr1 7783728 7783870 -274409794 - FLAM_A SINE Alu 0 133 1 399 288 297 10 chr1 7784330 7784989 -274408675 - L2 LINE L2 -1 3312 2459 676 160 25 8 chr1 7786366 7786515 -274407149 - FLAM_A SINE Alu 0 151 1 1185 162 0 40 chr1 7787208 7787436 -274406228 + AluJo SINE Alu 87 305 -7 237 108 0 0 chr1 7787479 7787516 -274406148 + (TCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr1 7790671 7790698 -274402966 + (TG)n Simple_repeat Simple_repeat 1 27 0 1892 144 7 0 chr1 7791375 7791674 -274401990 + AluSx SINE Alu 1 301 -11 1023 256 133 36 chr1 7792188 7792633 -274401031 - L2 LINE L2 0 3313 2826 226 358 51 7 chr1 7793455 7793592 -274400072 + L2 LINE L2 3170 3312 -1 514 101 0 0 chr1 7793965 7794044 -274399620 + AluJ/FRAM SINE Alu 232 310 -2 239 232 72 120 chr1 7794306 7794431 -274399233 + MIR3 SINE MIR 9 127 -81 2067 111 0 3 chr1 7794439 7794750 -274398914 - AluSg SINE Alu 0 310 2 2080 119 0 10 chr1 7795458 7795752 -274397912 - AluSx SINE Alu -21 291 1 195 341 24 0 chr1 7797077 7797162 -274396502 - L2 LINE L2 -205 3067 2981 383 226 57 28 chr1 7797448 7797554 -274396110 + MER5B DNA MER1_type 12 120 -58 200 260 244 65 chr1 7797646 7797769 -274395895 - MER5B DNA MER1_type -21 157 13 2188 106 0 3 chr1 7797826 7798128 -274395536 - AluSx SINE Alu -11 301 1 384 274 160 23 chr1 7799119 7799294 -274394370 - L2 LINE L2 -2 3311 3113 980 97 0 0 chr1 7800401 7800583 -274393081 - AluSg SINE Alu 0 329 148 212 216 0 0 chr1 7800602 7800639 -274393025 + L2 LINE L2 3230 3266 -6 1181 81 0 0 chr1 7800651 7800800 -274392864 - AluSg SINE Alu -161 149 1 186 270 0 0 chr1 7801082 7801119 -274392545 - L2 LINE L2 -6 3266 3230 6663 121 6 119 chr1 7801626 7802298 -274391366 + L1P LINE L1 826 1258 -4888 2187 63 20 20 chr1 7802298 7802601 -274391063 + AluY SINE Alu 1 303 -8 6663 121 6 119 chr1 7802601 7803329 -274390335 + L1P LINE L1 1258 2067 -4079 2026 58 4 8 chr1 7803326 7803584 -274390080 + L1PA7 LINE L1 5878 6134 -20 * 519 172 172 22 chr1 7804161 7804341 -274389323 - Charlie2 DNA MER1_type -31 2831 2625 2081 177 33 3 chr1 7804358 7804719 -274388945 - MSTA LTR MaLR -54 374 3 9117 168 33 12 chr1 7804721 7805797 -274387867 - MSTA-int LTR MaLR 0 1651 528 2037 107 33 3 chr1 7805797 7806096 -274387568 - AluSg SINE Alu -2 308 1 9117 168 33 12 chr1 7806096 7806636 -274387028 - MSTA-int LTR MaLR -1123 528 1 1326 159 14 0 chr1 7806639 7806846 -274386818 - MSTA LTR MaLR -3 425 216 619 237 93 34 chr1 7806846 7806871 -274386793 - Charlie2 DNA MER1_type -232 2630 2608 1894 133 10 17 chr1 7806871 7807173 -274386491 - AluSx SINE Alu -11 301 2 619 237 93 34 chr1 7807173 7807468 -274386196 - Charlie2 DNA MER1_type -254 2608 2291 890 261 53 0 chr1 7807515 7807779 -274385885 - Charlie2 DNA MER1_type -728 2134 1857 329 268 105 67 chr1 7807782 7807991 -274385673 - Charlie2 DNA MER1_type -2457 325 109 245 204 56 0 chr1 7808299 7808353 -274385311 + Charlie4a DNA MER1_type 276 332 -176 1998 107 7 39 chr1 7808362 7808672 -274384992 - AluSx SINE Alu -12 300 1 2096 92 14 3 chr1 7808672 7808964 -274384700 - AluSc SINE Alu -14 295 1 385 136 61 0 chr1 7808971 7809037 -274384627 + Charlie4a DNA MER1_type 434 503 -5 2203 96 0 3 chr1 7809185 7809487 -274384177 - AluSq SINE Alu -12 301 1 490 137 0 0 chr1 7810770 7810843 -274382821 + L1MC1 LINE L1 6254 6326 -7 1407 182 22 35 chr1 7810988 7811301 -274382363 + AluJo SINE Alu 1 309 -3 1416 169 63 3 chr1 7812346 7812648 -274381016 + MER33 DNA MER1_type 1 320 -4 2103 104 0 0 chr1 7812933 7813239 -274380425 - AluSg SINE Alu 0 306 1 497 273 100 45 chr1 7813895 7814115 -274379549 - L2 LINE L2 0 3313 3082 1022 269 110 63 chr1 7814201 7814802 -274378862 - MLT1G LTR MaLR 0 590 1 243 218 13 39 chr1 7814869 7814947 -274378717 + MIR3 SINE MIR 127 202 -6 2794 10 0 0 chr1 7815418 7815730 -274377934 + AluYb8 SINE Alu 1 312 -6 255 61 0 0 chr1 7816265 7816298 -274377366 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 585 124 39 8 chr1 7817513 7817642 -274376022 + Tigger3(Golem) DNA MER2_type 2499 2631 -398 3639 133 15 0 chr1 7817642 7818161 -274375503 - MER1A DNA MER1_type 0 527 1 255 338 93 13 chr1 7818373 7818524 -274375140 + MIR SINE MIR 24 186 -76 577 250 16 0 chr1 7820061 7820185 -274373479 + MIR SINE MIR 120 245 -17 200 59 29 0 chr1 7820460 7820494 -274373170 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 207 0 0 0 chr1 7821620 7821643 -274372021 + (T)n Simple_repeat Simple_repeat 1 23 0 360 273 258 11 chr1 7821743 7822010 -274371654 - L2 LINE L2 -962 2352 2020 215 278 0 0 chr1 7822066 7822120 -274371544 + L2 LINE L2 2560 2613 -701 859 152 0 0 chr1 7822127 7822252 -274371412 + FLAM_C SINE Alu 3 127 -6 2361 57 14 0 chr1 7822812 7823108 -274370556 - AluY SINE Alu -11 300 1 633 237 184 4 chr1 7823239 7823443 -274370221 + MIR SINE MIR 23 256 -6 191 130 0 22 chr1 7825363 7825409 -274368255 + (CGGGGG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 7825458 7825480 -274368184 + GC_rich Low_complexity Low_complexity 1 22 0 48 18 0 0 chr1 7825514 7825569 -274368095 + GC_rich Low_complexity Low_complexity 1 55 0 204 40 0 0 chr1 7828959 7828984 -274364680 + (TC)n Simple_repeat Simple_repeat 2 26 0 625 161 98 18 chr1 7828984 7829096 -274364568 - FLAM_A SINE Alu -12 121 1 511 250 43 18 chr1 7829456 7829626 -274364038 + MIR SINE MIR 52 226 -36 224 346 49 47 chr1 7831276 7831604 -274362060 - L2 LINE L2 -223 3049 2722 26 0 0 0 chr1 7831842 7831868 -274361796 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 240 0 chr1 7832321 7832467 -274361197 + MER5A DNA MER1_type 9 189 0 2578 61 0 3 chr1 7832668 7832978 -274360686 - AluY SINE Alu -2 309 1 2168 89 0 40 chr1 7834714 7835017 -274358647 - AluSc SINE Alu -18 291 1 2196 125 3 0 chr1 7835204 7835508 -274358156 - AluSp SINE Alu -8 305 1 2022 144 23 3 chr1 7835638 7835943 -274357721 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr1 7835943 7835965 -274357699 + AT_rich Low_complexity Low_complexity 1 22 0 870 276 44 8 chr1 7837557 7837807 -274355857 - MLT1H1 LTR MaLR -39 516 258 470 155 136 19 chr1 7837867 7837970 -274355694 + FLAM_A SINE Alu 22 136 -6 268 320 33 26 chr1 7838729 7838882 -274354782 - L3 LINE CR1 -163 1414 1261 234 0 0 0 chr1 7839286 7839312 -274354352 + (A)n Simple_repeat Simple_repeat 1 26 0 195 343 38 9 chr1 7841556 7841661 -274352003 - MIR SINE MIR -51 211 104 871 205 20 37 chr1 7842638 7842853 -274350811 - L1MD3 LINE L1 0 8040 7844 1336 142 127 40 chr1 7842928 7843181 -274350483 + AluJb SINE Alu 17 291 -21 369 261 126 85 chr1 7843312 7843350 -274350314 - L1ME4a LINE L1 -57 6064 6029 2302 95 7 0 chr1 7843350 7843644 -274350020 + AluSc SINE Alu 1 296 -13 369 261 126 85 chr1 7843644 7844168 -274349496 - L1ME4a LINE L1 -92 6029 5479 660 128 29 20 chr1 7844738 7844840 -274348824 + AluJo/FLAM SINE Alu 14 116 -196 2239 88 40 3 chr1 7844840 7845137 -274348527 - AluY SINE Alu -3 308 1 2323 96 0 3 chr1 7845156 7845459 -274348205 + AluSc SINE Alu 1 302 -7 404 254 108 88 chr1 7845461 7845619 -274348045 + L1ME LINE L1 3059 3212 -2934 1639 120 0 0 chr1 7845619 7845835 -274347829 + AluSq SINE Alu 1 216 -97 404 254 108 88 chr1 7845835 7846088 -274347576 + L1ME LINE L1 3212 3459 -2687 2361 91 0 0 chr1 7846088 7846386 -274347278 + AluSg SINE Alu 1 298 -12 404 254 108 88 chr1 7846386 7846730 -274346934 + L1ME LINE L1 3459 3830 -2316 1060 209 225 57 chr1 7846752 7847118 -274346546 - MLT1G LTR MaLR 0 590 131 2238 81 7 18 chr1 7847118 7847426 -274346238 + AluSc SINE Alu 1 305 0 1060 209 225 57 chr1 7847426 7847512 -274346152 - MLT1G LTR MaLR -459 131 61 1836 167 14 0 chr1 7847512 7847805 -274345859 - AluJb SINE Alu -13 299 3 213 39 0 0 chr1 7847817 7847843 -274345821 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 621 155 0 0 chr1 7847845 7847948 -274345716 - AluSg/x SINE Alu -32 278 176 477 206 72 0 chr1 7847952 7848049 -274345615 - MLT1G LTR MaLR -490 105 2 306 0 0 0 chr1 7848212 7848246 -274345418 + (TA)n Simple_repeat Simple_repeat 2 35 0 1855 138 0 46 chr1 7848248 7848552 -274345112 - AluJb SINE Alu -11 301 12 267 293 24 0 chr1 7848568 7848650 -274345014 + L1ME LINE L1 4029 4112 -2034 1711 184 7 0 chr1 7848733 7849011 -274344653 + AluJo SINE Alu 1 280 -32 297 0 0 0 chr1 7849029 7849062 -274344602 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 280 157 39 chr1 7849072 7849258 -274344406 + L1ME LINE L1 4176 4339 -1827 682 227 0 0 chr1 7849258 7849386 -274344278 + FLAM_A SINE Alu 1 128 -5 483 280 157 39 chr1 7849386 7850412 -274343252 + L1ME LINE L1 4339 5541 -625 264 229 202 9 chr1 7851287 7851396 -274342268 + L2 LINE L2 3142 3271 -1 345 348 21 0 chr1 7851804 7851945 -274341719 + MIR SINE MIR 49 192 -70 591 294 72 17 chr1 7851946 7852181 -274341483 - MIR SINE MIR -9 253 6 802 148 32 19 chr1 7852466 7852621 -274341043 + L1MB5 LINE L1 6010 6166 -8 2344 100 0 3 chr1 7853790 7854090 -274339574 - AluSg SINE Alu -11 299 1 490 226 90 0 chr1 7854731 7854864 -274338800 + MIR SINE MIR 49 193 -69 252 100 0 0 chr1 7856839 7856879 -274336785 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 427 345 112 24 chr1 7857128 7857236 -274336428 - L2 LINE L2 0 3313 3216 1935 143 34 3 chr1 7857236 7857530 -274336134 - AluSx SINE Alu -9 303 1 427 345 112 24 chr1 7857530 7857887 -274335777 - L2 LINE L2 -97 3216 2807 406 269 0 21 chr1 7857924 7858100 -274335564 - MIR SINE MIR -19 243 7 285 319 70 75 chr1 7858103 7858558 -274335106 - L2 LINE L2 -540 2774 2322 24 53 0 0 chr1 7858604 7858642 -274335022 + AT_rich Low_complexity Low_complexity 1 38 0 2790 20 0 0 chr1 7860665 7860966 -274332698 + AluYb8 SINE Alu 1 301 -17 272 182 2 0 chr1 7861089 7861146 -274332518 - L1ME3 LINE L1 -196 5968 5911 1094 266 109 30 chr1 7861212 7862351 -274331313 - L1ME3 LINE L1 -356 5806 4577 490 237 51 0 chr1 7862569 7862725 -274330939 - L1M LINE L1 -735 5427 5264 24 0 0 0 chr1 7863015 7863039 -274330625 + AT_rich Low_complexity Low_complexity 1 24 0 231 36 0 0 chr1 7863232 7863260 -274330404 + (A)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr1 7863260 7863290 -274330374 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 72 0 27 chr1 7863290 7863553 -274330111 - AluY SINE Alu -5 306 51 216 67 0 0 chr1 7863560 7863590 -274330074 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2282 103 0 0 chr1 7865385 7865705 -274327959 - AluSg SINE Alu 0 320 1 341 230 0 0 chr1 7866510 7866584 -274327080 - MIR SINE MIR -113 149 76 671 173 168 39 chr1 7866586 7866765 -274326899 + MER105 DNA DNA 1 202 -2 215 316 43 51 chr1 7867914 7868031 -274325633 - L2 LINE L2 -16 3256 3141 2097 134 0 29 chr1 7868637 7868943 -274324721 + AluSg SINE Alu 1 297 -13 2237 141 32 3 chr1 7870514 7870890 -274322774 - MLT1B LTR MaLR 0 390 4 42 20 0 0 chr1 7872188 7872237 -274321427 + AT_rich Low_complexity Low_complexity 1 49 0 291 294 20 0 chr1 7873220 7873322 -274320342 + MIR SINE MIR 86 189 -73 25 65 0 0 chr1 7874903 7874949 -274318715 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr1 7876740 7876776 -274316888 + (CA)n Simple_repeat Simple_repeat 2 37 0 987 260 134 67 chr1 7878800 7879195 -274314469 - L1ME1 LINE L1 -25 6141 5667 2313 48 3 7 chr1 7879195 7879484 -274314180 + AluY SINE Alu 1 288 -23 987 260 134 67 chr1 7879484 7879651 -274314013 - L1ME1 LINE L1 -499 5667 5513 270 81 0 0 chr1 7879734 7879771 -274313893 + (T)n Simple_repeat Simple_repeat 1 37 0 306 65 0 0 chr1 7879771 7879817 -274313847 - U5 snRNA snRNA -65 51 6 1331 209 16 35 chr1 7880049 7880365 -274313299 - AluJo SINE Alu 0 312 3 849 125 0 52 chr1 7880369 7880505 -274313159 - FLAM_C SINE Alu -3 130 2 2393 74 0 16 chr1 7880785 7881097 -274312567 - AluY SINE Alu -4 307 1 267 54 0 0 chr1 7882343 7882380 -274311284 + (T)n Simple_repeat Simple_repeat 1 37 0 333 264 0 112 chr1 7882940 7883065 -274310599 + L2 LINE L2 3191 3301 -12 1503 232 24 18 chr1 7886884 7887225 -274306439 + MER2 DNA MER2_type 1 343 -1 198 0 0 0 chr1 7889454 7889476 -274304188 + (GGAGAA)n Simple_repeat Simple_repeat 1 22 0 215 261 0 0 chr1 7891022 7891087 -274302577 + (CCA)n Simple_repeat Simple_repeat 1 65 0 505 295 116 62 chr1 7892042 7892507 -274301157 - L2 LINE L2 -2 3311 2822 203 61 30 0 chr1 7893253 7893286 -274300378 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 29 28 0 0 chr1 7894638 7894674 -274298990 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 7894849 7894879 -274298785 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 7898625 7898649 -274295015 + GC_rich Low_complexity Low_complexity 1 24 0 497 118 0 21 chr1 7899554 7899647 -274294017 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 286 314 124 13 chr1 7901462 7901615 -274292049 + MIR SINE MIR 33 202 -60 2442 73 0 0 chr1 7901682 7901985 -274291679 - AluY SINE Alu -8 303 1 258 287 130 13 chr1 7902440 7902620 -274291044 + MIR SINE MIR 18 216 -46 182 335 87 64 chr1 7903730 7903903 -274289761 + L2 LINE L2 2874 3050 -263 223 347 107 0 chr1 7903970 7904091 -274289573 + L2 LINE L2 3180 3313 0 534 235 0 0 chr1 7904099 7904269 -274289395 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 282 250 0 0 chr1 7904306 7904394 -274289270 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 508 182 214 73 chr1 7904489 7904681 -274288983 - MER20 DNA MER1_type 0 219 1 1506 126 4 17 chr1 7906038 7906268 -274287396 - AluJo SINE Alu 0 312 86 977 281 43 7 chr1 7906332 7906694 -274286970 + L1MB7 LINE L1 5796 6176 -2 2432 45 0 0 chr1 7906753 7907041 -274286623 - AluY SINE Alu -23 288 1 1843 126 11 0 chr1 7907063 7907326 -274286338 - AluSx SINE Alu -46 266 1 348 125 0 0 chr1 7907337 7907393 -274286271 + MER96B DNA MER1_type? 190 245 -172 2381 65 0 28 chr1 7907393 7907714 -274285950 - AluSx SINE Alu 0 312 1 2142 88 3 29 chr1 7907748 7908054 -274285610 - AluY SINE Alu -11 300 3 519 137 0 17 chr1 7908477 7908505 -274285159 - MER96B DNA MER1_type? -235 182 155 2349 84 0 7 chr1 7908505 7908815 -274284849 + AluSc SINE Alu 1 308 -1 519 137 0 17 chr1 7908815 7908903 -274284761 - MER96B DNA MER1_type? -262 155 68 297 164 33 0 chr1 7909106 7909167 -274284497 + MER45 DNA AcHobo 44 106 -72 233 175 0 0 chr1 7909161 7909201 -274284463 + MER45 DNA AcHobo 1542 1581 0 * 686 253 128 0 chr1 7910121 7910411 -274283253 + MER58B DNA MER1_type 6 341 0 2368 69 0 0 chr1 7911249 7911539 -274282125 + AluY SINE Alu 1 290 -21 2858 80 0 3 chr1 7911570 7911933 -274281731 + THE1B LTR MaLR 1 362 -2 577 316 54 24 chr1 7912186 7912521 -274281143 - L1ME4a LINE L1 -255 5866 5522 2272 100 0 0 chr1 7912538 7912837 -274280827 - AluSg SINE Alu -11 299 1 1597 130 8 8 chr1 7914229 7914502 -274279162 - AluJb SINE Alu 0 319 47 1926 151 3 0 chr1 7915232 7915530 -274278134 + AluJb SINE Alu 1 299 -13 880 117 0 0 chr1 7915530 7915650 -274278014 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7915668 7915743 -274277921 + A-rich Low_complexity Low_complexity 1 75 0 2382 77 3 0 chr1 7916156 7916455 -274277209 + AluSx SINE Alu 1 300 -12 2441 54 0 0 chr1 7916875 7917172 -274276492 + AluY SINE Alu 1 297 -14 964 196 6 0 chr1 7917309 7917482 -274276182 - AluJ SINE Alu -13 299 126 23 54 0 0 chr1 7917482 7917519 -274276145 + AT_rich Low_complexity Low_complexity 1 37 0 546 96 0 0 chr1 7917619 7917692 -274275972 - AluJ/FLAM SINE Alu -239 73 1 802 188 0 0 chr1 7918076 7918209 -274275455 - AluJ SINE Alu -169 133 1 1022 137 12 6 chr1 7918259 7918420 -274275244 + U1 snRNA snRNA 4 165 0 1637 114 84 4 chr1 7918459 7918732 -274274932 + AluSg SINE Alu 1 295 -15 1823 129 3 30 chr1 7919079 7919381 -274274283 + AluSx SINE Alu 1 294 -18 2279 99 0 0 chr1 7919383 7919685 -274273979 + AluY SINE Alu 3 304 -7 226 319 44 33 chr1 7920406 7920497 -274273167 - MIR3 SINE MIR -3 205 114 2212 109 6 6 chr1 7920544 7920856 -274272808 + AluSx SINE Alu 1 312 0 920 213 50 46 chr1 7921734 7921974 -274271690 + MIR SINE MIR 19 259 -3 405 288 110 0 chr1 7922051 7922169 -274271495 - L3 LINE CR1 -133 1444 1314 1711 183 0 7 chr1 7923563 7923863 -274269801 + AluJb SINE Alu 1 298 -14 2341 103 3 3 chr1 7924913 7925223 -274268441 - AluSq SINE Alu -3 310 1 261 327 242 0 chr1 7925236 7925401 -274268263 + MIR SINE MIR 57 261 -1 2333 70 0 17 chr1 7925601 7925888 -274267776 + AluY SINE Alu 22 303 -8 269 222 0 0 chr1 7926065 7926110 -274267554 - L2 LINE L2 -24 3289 3245 208 75 25 25 chr1 7926118 7926158 -274267506 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2081 135 3 3 chr1 7926191 7926487 -274267177 - AluSx SINE Alu -16 296 1 543 202 90 106 chr1 7926487 7926675 -274266989 - MIR SINE MIR -16 246 62 292 299 19 9 chr1 7927008 7927115 -274266549 + L1MC4 LINE L1 7707 7814 -228 1510 156 89 7 chr1 7927115 7927397 -274266267 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7927400 7927443 -274266221 + AT_rich Low_complexity Low_complexity 1 43 0 293 256 93 0 chr1 7927473 7927559 -274266105 + L1MC4 LINE L1 7806 7899 -143 1090 167 6 0 chr1 7927617 7927791 -274265873 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7927801 7927873 -274265791 + CT-rich Low_complexity Low_complexity 1 75 -11 1796 166 10 7 chr1 7927873 7928174 -274265490 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7928174 7928187 -274265477 + CT-rich Low_complexity Low_complexity 74 86 0 302 229 0 16 chr1 7928193 7928254 -274265410 + L2 LINE L2 3254 3313 0 190 321 0 25 chr1 7928319 7928400 -274265264 + L2 LINE L2 2174 2252 -1062 2302 113 0 3 chr1 7928774 7929085 -274264579 - AluSg SINE Alu 0 310 1 231 36 0 0 chr1 7929085 7929113 -274264551 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2022 108 48 0 chr1 7929113 7929382 -274264282 - AluSx SINE Alu -30 282 1 991 101 8 0 chr1 7929385 7929514 -274264150 - AluSq/x SINE Alu -179 134 5 321 260 67 39 chr1 7930564 7930668 -274262996 - L3b LINE CR1 -190 1393 1287 2157 115 3 14 chr1 7931061 7931392 -274262272 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 7931399 7931420 -274262244 + AT_rich Low_complexity Low_complexity 1 21 0 2034 103 29 7 chr1 7931629 7931910 -274261754 - AluSx SINE Alu -14 298 12 2326 66 20 7 chr1 7932305 7932606 -274261058 - AluSq SINE Alu -8 305 1 2072 116 176 19 chr1 7932676 7932715 -274260949 - MSTA LTR MaLR 0 428 396 2197 126 10 0 chr1 7932715 7933024 -274260640 + AluSx SINE Alu 1 312 0 2072 116 176 19 chr1 7933024 7933354 -274260310 - MSTA LTR MaLR -32 396 1 225 0 0 0 chr1 7933646 7933671 -274259993 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 710 187 0 0 chr1 7933674 7933781 -274259883 - AluJb SINE Alu -31 281 175 1840 131 28 21 chr1 7933820 7934140 -274259524 + AluJb SINE Alu 1 312 0 2140 98 7 17 chr1 7934150 7934460 -274259204 - AluSx SINE Alu 0 308 2 203 316 63 0 chr1 7935208 7935287 -274258377 + L2 LINE L2 3189 3272 0 1799 81 27 0 chr1 7935344 7935566 -274258098 - AluSx SINE Alu -84 228 1 872 124 0 0 chr1 7935695 7935808 -274257856 + AluSx SINE Alu 62 174 -138 1817 97 4 4 chr1 7935809 7936046 -274257618 - AluSc SINE Alu -72 237 1 788 193 60 0 chr1 7936055 7936221 -274257443 - MLT1C LTR MaLR -291 176 1 210 336 138 52 chr1 7936222 7936454 -274257210 + L2 LINE L2 3002 3253 -19 234 0 0 0 chr1 7936458 7936484 -274257180 + (CA)n Simple_repeat Simple_repeat 2 27 0 805 188 0 0 chr1 7936484 7936612 -274257052 - FLAM_C SINE Alu -5 128 1 2125 129 7 10 chr1 7936657 7936966 -274256698 + AluSx SINE Alu 3 310 -2 2179 112 7 0 chr1 7937170 7937456 -274256208 + AluSx SINE Alu 1 288 -24 297 0 0 0 chr1 7937468 7937501 -274256163 + (TG)n Simple_repeat Simple_repeat 2 34 0 418 370 24 6 chr1 7937634 7937799 -274255865 - MIR3 SINE MIR -9 199 32 270 246 0 0 chr1 7937908 7937973 -274255691 + MIR SINE MIR 34 98 -164 2323 104 0 0 chr1 7938061 7938360 -274255304 + AluSx SINE Alu 1 299 -13 297 75 0 0 chr1 7938487 7938527 -274255137 + (TG)n Simple_repeat Simple_repeat 2 41 0 1002 126 119 0 chr1 7938807 7938958 -274254706 + AluJb SINE Alu 137 305 -7 248 109 0 22 chr1 7938961 7939007 -274254657 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2075 130 27 10 chr1 7939064 7939365 -274254299 - AluSq SINE Alu -7 306 1 2480 71 3 7 chr1 7939472 7939781 -274253883 - AluY SINE Alu 0 311 4 2351 83 3 7 chr1 7939817 7940119 -274253545 + AluY SINE Alu 1 301 -10 1618 184 3 44 chr1 7940135 7940430 -274253234 + AluJo SINE Alu 10 293 -19 444 37 0 0 chr1 7940430 7940484 -274253180 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 1618 184 3 44 chr1 7940484 7940504 -274253160 + AluJo SINE Alu 293 312 0 349 245 47 19 chr1 7940551 7940657 -274253007 - L2 LINE L2 0 3313 3205 609 67 0 0 chr1 7940837 7940912 -274252752 + AluS SINE Alu 2 76 -236 2418 74 0 3 chr1 7940912 7941196 -274252468 + AluSq SINE Alu 15 297 -16 266 75 0 0 chr1 7941251 7941291 -274252373 + HY1 scRNA scRNA 72 111 -1 699 196 0 8 chr1 7941599 7941732 -274251932 + FLAM_C SINE Alu 2 133 -10 223 169 0 34 chr1 7941732 7941791 -274251873 + GA-rich Low_complexity Low_complexity 4 60 0 1994 127 7 13 chr1 7942977 7943284 -274250380 - AluJb SINE Alu -7 305 1 2552 58 0 0 chr1 7943441 7943736 -274249928 + AluY SINE Alu 1 295 -16 188 289 26 26 chr1 7943780 7943856 -274249808 + L2 LINE L2 2422 2497 -817 610 315 88 28 chr1 7943856 7944425 -274249239 + L2 LINE L2 2221 2823 -491 538 280 70 23 chr1 7944459 7944673 -274248991 + L2 LINE L2 3090 3313 0 2160 103 34 0 chr1 7944744 7945035 -274248629 + AluSg SINE Alu 1 301 -9 335 327 94 65 chr1 7945170 7945604 -274248060 + L2 LINE L2 2812 3258 -14 829 217 0 6 chr1 7945833 7945994 -274247670 + FRAM SINE Alu 1 160 -6 2146 91 30 27 chr1 7946047 7946460 -274247204 + AluSp SINE Alu 1 414 0 284 250 115 77 chr1 7946460 7946533 -274247131 + L1 LINE L1 4600 4669 -1477 2489 49 0 0 chr1 7946533 7946821 -274246843 + AluY SINE Alu 1 288 -23 180 0 0 0 chr1 7946821 7946841 -274246823 + (TA)n Simple_repeat Simple_repeat 2 21 0 284 250 115 77 chr1 7946841 7946922 -274246742 + L1 LINE L1 4668 4761 -1385 2427 89 0 16 chr1 7946922 7947238 -274246426 + AluSq SINE Alu 1 311 -2 411 217 3 44 chr1 7947287 7947437 -274246227 + L1ME4a LINE L1 5201 5339 -807 1829 113 19 12 chr1 7947438 7947694 -274245970 + AluSp SINE Alu 39 296 -17 2361 139 86 8 chr1 7947699 7948094 -274245570 + MSTB LTR MaLR 1 426 0 435 219 34 25 chr1 7948108 7948227 -274245437 - MIR SINE MIR -28 234 115 772 237 21 5 chr1 7948232 7948426 -274245238 + MER58A DNA MER1_type 1 197 -27 453 184 13 133 chr1 7948429 7948500 -274245164 - MER45A DNA AcHobo -1407 174 131 2028 116 56 0 chr1 7948500 7948784 -274244880 + AluSx SINE Alu 1 300 -12 453 184 13 133 chr1 7948784 7948870 -274244794 - MER45A DNA AcHobo -1450 131 36 221 330 42 4 chr1 7948943 7949041 -274244623 - MIR SINE MIR -94 114 13 282 349 8 0 chr1 7949059 7949185 -274244479 + L1ME4a LINE L1 5486 5612 -509 353 258 118 45 chr1 7949194 7949415 -274244249 + L1ME4a LINE L1 5827 6063 -58 1749 159 25 11 chr1 7949631 7949914 -274243750 + AluJb SINE Alu 10 296 -16 368 264 203 11 chr1 7949992 7950174 -274243490 + MER115 DNA AcHobo 23 239 -454 3227 125 97 22 chr1 7950356 7950933 -274242731 - LTR29 LTR ERV1 0 622 3 243 213 85 43 chr1 7950950 7951044 -274242620 + Zaphod DNA AcHobo 3915 4012 -19 2244 109 3 34 chr1 7951178 7951499 -274242165 - AluSx SINE Alu -1 311 1 1602 157 4 15 chr1 7951499 7951760 -274241904 - AluJo SINE Alu -16 296 39 2286 110 3 19 chr1 7951934 7952251 -274241413 + AluSx SINE Alu 1 312 0 1739 175 23 16 chr1 7952338 7952641 -274241023 - AluJb SINE Alu -7 305 1 2178 119 3 3 chr1 7953050 7953352 -274240312 - AluSx SINE Alu -10 302 1 2116 108 0 63 chr1 7953558 7953891 -274239773 + AluSx SINE Alu 1 312 0 2132 177 16 26 chr1 7954095 7954446 -274239218 - L1MB7 LINE L1 -9 6175 5827 2287 114 3 0 chr1 7954446 7954754 -274238910 - AluSx SINE Alu -3 309 1 2132 177 16 26 chr1 7954754 7954832 -274238832 - L1MB7 LINE L1 -357 5827 5750 2256 103 17 7 chr1 7954892 7955194 -274238470 - AluSg SINE Alu -5 305 1 2130 99 23 26 chr1 7955195 7955497 -274238167 - AluSx SINE Alu -11 301 1 2250 121 7 0 chr1 7955649 7955954 -274237710 - AluSp SINE Alu -6 307 1 548 288 142 14 chr1 7956012 7956177 -274237487 - L1ME3 LINE L1 -218 5944 5801 1070 214 28 0 chr1 7956177 7956392 -274237272 - MER58A DNA MER1_type 0 224 4 548 288 142 14 chr1 7956392 7956771 -274236893 - L1ME3 LINE L1 -361 5801 5323 2024 121 0 17 chr1 7956771 7957060 -274236604 - AluSx SINE Alu -4 308 25 1646 54 0 0 chr1 7957060 7957244 -274236420 - AluY SINE Alu -126 185 1 420 149 0 64 chr1 7957270 7957364 -274236300 + AluJ/FRAM SINE Alu 218 305 -7 24 0 0 0 chr1 7957364 7957388 -274236276 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 7957401 7957439 -274236225 + AT_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 7957700 7957724 -274235940 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 311 256 33 0 chr1 7957752 7957842 -274235822 - L1ME LINE L1 -297 5824 5732 2229 112 0 7 chr1 7957887 7958192 -274235472 - AluSg SINE Alu -7 303 1 1071 68 8 0 chr1 7958199 7958331 -274235333 - AluSq/x SINE Alu -180 133 1 2604 65 3 0 chr1 7959027 7959336 -274234328 + AluY SINE Alu 1 310 -1 2651 64 0 0 chr1 7959339 7959650 -274234014 + AluY SINE Alu 1 311 0 2097 139 0 10 chr1 7959662 7959971 -274233693 + AluSx SINE Alu 1 306 -6 323 197 15 0 chr1 7960027 7960093 -274233571 - AluJ/FLAM SINE Alu -228 74 8 2071 106 7 0 chr1 7960142 7960425 -274233239 + AluY SINE Alu 18 302 -9 383 158 267 10 chr1 7960653 7960754 -274232910 + FLAM_C SINE Alu 5 131 -2 572 163 0 0 chr1 7960980 7961066 -274232598 + AluS SINE Alu 7 92 -221 1683 124 116 0 chr1 7961086 7961344 -274232320 + AluSx SINE Alu 21 308 -4 969 129 0 0 chr1 7962508 7962647 -274231017 + AluJb SINE Alu 1 139 -173 2135 112 0 7 chr1 7962861 7963147 -274230517 - AluSq SINE Alu -29 284 1 1802 155 3 14 chr1 7963398 7963695 -274229969 + AluJo SINE Alu 5 298 -14 1401 201 123 4 chr1 7963698 7963967 -274229697 + AluJo SINE Alu 1 301 -1 331 111 0 0 chr1 7963967 7964012 -274229652 + (GA)n Simple_repeat Simple_repeat 1 45 0 584 171 0 8 chr1 7964015 7964132 -274229532 + GA-rich Low_complexity Low_complexity 1 116 0 387 367 137 5 chr1 7964146 7964563 -274229101 + L2 LINE L2 2173 2644 -670 2284 100 0 0 chr1 7964571 7964887 -274228777 - AluSx SINE Alu 0 317 2 445 284 42 64 chr1 7964979 7965215 -274228449 + L2 LINE L2 3078 3308 -5 1886 124 11 11 chr1 7965721 7965995 -274227669 + AluSq SINE Alu 2 275 -38 778 125 191 0 chr1 7965996 7966132 -274227532 + AluSp SINE Alu 137 298 -15 2509 76 3 0 chr1 7966273 7966576 -274227088 + AluSp SINE Alu 2 305 -8 405 58 0 0 chr1 7966576 7966628 -274227036 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 143 29 0 chr1 7966669 7966739 -274226925 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 293 86 0 0 chr1 7966741 7966799 -274226865 + LTR66 LTR ERVL 394 451 -159 2295 84 3 0 chr1 7967018 7967337 -274226327 + AluSp SINE Alu 1 320 0 868 121 35 7 chr1 7967358 7967499 -274226165 + L1MA5 LINE L1 6154 6298 -2 326 298 23 46 chr1 7967550 7967681 -274225983 + MIR SINE MIR 134 261 -1 254 146 0 18 chr1 7968021 7968076 -274225588 + (TCC)n Simple_repeat Simple_repeat 3 56 0 253 299 11 11 chr1 7968446 7968533 -274225131 - LTR67 LTR ERVL -3 554 468 343 228 40 101 chr1 7968607 7968719 -274224945 + L1MD2 LINE L1 6210 6312 -47 2267 111 3 0 chr1 7968719 7969025 -274224639 - AluSx SINE Alu -5 307 1 343 228 40 101 chr1 7969025 7969061 -274224603 + L1MD2 LINE L1 6312 6349 -10 2145 106 6 38 chr1 7969391 7969711 -274223953 + AluSg SINE Alu 1 310 0 2382 88 10 0 chr1 7970321 7970615 -274223049 - AluSp SINE Alu -16 297 1 2368 91 27 0 chr1 7970919 7971216 -274222448 - AluSq SINE Alu -3 310 6 816 85 24 30 chr1 7971222 7971386 -274222278 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 468 0 0 0 chr1 7971384 7971436 -274222228 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 * 1965 113 0 18 chr1 7971436 7971788 -274221876 - AluSx SINE Alu 0 359 13 592 317 86 46 chr1 7971862 7972316 -274221348 + L2 LINE L2 2842 3313 0 2641 108 8 3 chr1 7972376 7972738 -274220926 - THE1B LTR MaLR 0 364 1 425 163 47 46 chr1 7973686 7973801 -274219863 + MER34 LTR ERV1 431 536 -6 231 40 0 140 chr1 7973809 7973859 -274219805 + MLT1D LTR MaLR 245 287 -218 2284 94 0 10 chr1 7973886 7974174 -274219490 - AluSq SINE Alu -28 285 1 871 57 0 5 chr1 7974271 7974401 -274219263 + MER30 DNA MER1_type 1 126 -104 271 0 0 0 chr1 7974404 7974434 -274219230 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 2272 76 4 0 chr1 7974434 7974711 -274218953 - AluSx SINE Alu -31 281 5 444 198 47 38 chr1 7974734 7974840 -274218824 + L2 LINE L2 3166 3272 0 1994 123 45 3 chr1 7975471 7975763 -274217901 - AluSg SINE Alu -6 304 1 985 246 38 102 chr1 7975948 7976050 -274217614 - MER34 LTR ERV1 0 542 435 2205 135 0 3 chr1 7976050 7976354 -274217310 - AluSx SINE Alu -9 303 1 985 246 38 102 chr1 7976354 7976803 -274216861 - MER34 LTR ERV1 -107 435 27 2250 98 3 35 chr1 7976803 7977120 -274216544 - AluSx SINE Alu -5 307 1 985 246 38 102 chr1 7977120 7977144 -274216520 - MER34 LTR ERV1 -515 27 3 1762 100 10 46 chr1 7977171 7977578 -274216086 - MER1B DNA MER1_type 0 339 1 2293 108 3 25 chr1 7977920 7978235 -274215429 + AluSp SINE Alu 1 308 -5 2170 117 3 0 chr1 7978254 7978544 -274215120 + AluSx SINE Alu 5 295 -17 1575 155 68 0 chr1 7978916 7979215 -274214449 + AluJo SINE Alu 1 317 0 2307 128 0 0 chr1 7979536 7979841 -274213823 - AluJo SINE Alu -7 305 1 1957 127 37 10 chr1 7980185 7980520 -274213144 - AluSx SINE Alu 0 343 1 26 0 0 0 chr1 7980841 7980867 -274212797 + AT_rich Low_complexity Low_complexity 1 26 0 307 299 26 0 chr1 7980875 7980952 -274212712 - L1MC4 LINE L1 -1350 6692 6614 857 137 0 0 chr1 7980980 7981097 -274212567 - FLAM_C SINE Alu -26 117 1 210 91 0 0 chr1 7981125 7981158 -274212506 + (TG)n Simple_repeat Simple_repeat 2 34 0 1010 179 6 0 chr1 7981203 7981365 -274212299 + AluJb SINE Alu 136 298 -14 428 231 27 34 chr1 7982070 7982217 -274211447 + AluYa5 SINE Alu 164 309 -2 555 174 93 41 chr1 7982218 7982390 -274211274 - MER96B DNA MER1_type? -236 181 1 869 189 13 0 chr1 7982419 7982572 -274211092 - AluJb SINE Alu -21 291 137 24 96 0 0 chr1 7983000 7983073 -274210591 + GC_rich Low_complexity Low_complexity 1 73 0 826 124 0 0 chr1 7983586 7983699 -274209965 + AluJb SINE Alu 196 308 -4 2137 105 54 0 chr1 7983707 7984001 -274209663 + AluSg SINE Alu 1 310 0 737 254 21 25 chr1 7984137 7984373 -274209291 - L1MC4 LINE L1 0 8042 7808 204 68 0 102 chr1 7984466 7984525 -274209139 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 34 0 0 0 chr1 7985184 7985218 -274208446 + AT_rich Low_complexity Low_complexity 1 34 0 449 95 60 0 chr1 7985218 7985302 -274208362 - L1PB1 LINE L1 0 6151 6063 256 260 8 98 chr1 7985446 7985580 -274208084 - MER5A DNA MER1_type 0 189 54 307 222 40 95 chr1 7985773 7985899 -274207765 - L1ME LINE L1 -466 5655 5537 2316 92 0 0 chr1 7985992 7986304 -274207360 + AluSx SINE Alu 1 312 0 509 325 124 0 chr1 7986387 7986581 -274207083 + MIR SINE MIR 26 243 -19 405 300 19 25 chr1 7986937 7987097 -274206567 + MIR SINE MIR 34 192 -70 207 344 78 19 chr1 7987196 7987350 -274206314 + L2 LINE L2 2578 2740 -574 1101 73 0 7 chr1 7988732 7988869 -274204795 - AluSp/q SINE Alu -15 298 163 331 316 18 18 chr1 7989205 7989319 -274204345 + MIR SINE MIR 109 222 -40 2096 113 10 3 chr1 7989331 7989622 -274204042 - AluSg SINE Alu -17 293 1 1844 171 3 22 chr1 7990028 7990343 -274203321 + AluJb SINE Alu 1 309 -3 211 205 0 0 chr1 7990493 7990532 -274203132 + CT-rich Low_complexity Low_complexity 3 41 0 729 176 0 29 chr1 7990532 7990668 -274202996 - AluJb SINE Alu -179 133 2 532 238 6 70 chr1 7990750 7990851 -274202813 + MER45 DNA AcHobo 4 91 -862 2241 96 7 0 chr1 7990851 7991142 -274202522 - AluSx SINE Alu -19 293 1 532 238 6 70 chr1 7991142 7991212 -274202452 + MER45 DNA AcHobo 91 164 -789 450 248 255 0 chr1 7991333 7991486 -274202178 + MER45C DNA AcHobo 762 953 0 202 354 31 42 chr1 7991702 7991798 -274201866 + MIR3 SINE MIR 106 200 -8 1918 160 10 0 chr1 7991921 7992215 -274201449 + AluJo SINE Alu 1 297 -15 2518 93 0 0 chr1 7992495 7992808 -274200856 + AluSq SINE Alu 1 313 0 2142 130 0 3 chr1 7992944 7993236 -274200428 - AluSx SINE Alu -21 291 1 742 188 0 0 chr1 7993620 7993753 -274199911 - FLAM_C SINE Alu 0 133 1 935 137 12 6 chr1 7993803 7993964 -274199700 + U1 snRNA snRNA 4 165 0 1728 114 84 4 chr1 7994003 7994276 -274199388 + AluSg SINE Alu 1 295 -15 1913 129 3 30 chr1 7994623 7994925 -274198739 + AluSx SINE Alu 1 294 -18 2388 99 0 0 chr1 7994927 7995229 -274198435 + AluY SINE Alu 3 304 -7 225 319 44 33 chr1 7995950 7996041 -274197623 - MIR3 SINE MIR -3 205 114 2320 109 6 6 chr1 7996088 7996400 -274197264 + AluSx SINE Alu 1 312 0 884 208 50 46 chr1 7997278 7997518 -274196146 + MIR SINE MIR 19 259 -3 378 288 110 0 chr1 7997595 7997713 -274195951 - L3 LINE CR1 -133 1444 1314 1775 183 0 7 chr1 7999107 7999407 -274194257 + AluJb SINE Alu 1 298 -14 2353 103 3 3 chr1 8000457 8000767 -274192897 - AluSq SINE Alu -3 310 1 233 279 165 0 chr1 8000780 8000859 -274192805 + MIR SINE MIR 57 148 -114 2340 70 0 17 chr1 8001146 8001433 -274192231 + AluY SINE Alu 22 303 -8 255 245 0 0 chr1 8001606 8001655 -274192009 - L2 LINE L2 -20 3293 3245 208 75 25 25 chr1 8001663 8001703 -274191961 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2089 135 3 3 chr1 8001736 8002032 -274191632 - AluSx SINE Alu -16 296 1 511 223 85 101 chr1 8002032 8002220 -274191444 - MIR SINE MIR -16 246 62 300 306 25 13 chr1 8002515 8002660 -274191004 + L1MC4 LINE L1 7573 7814 -95 1517 156 89 7 chr1 8002660 8002942 -274190722 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 8002945 8002988 -274190676 + AT_rich Low_complexity Low_complexity 1 43 0 302 256 93 0 chr1 8003018 8003104 -274190560 + L1MC4 LINE L1 7806 7899 -143 1096 167 6 0 chr1 8003162 8003336 -274190328 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 8003346 8003418 -274190246 + CT-rich Low_complexity Low_complexity 1 75 -11 1806 166 10 7 chr1 8003418 8003719 -274189945 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 8003719 8003732 -274189932 + CT-rich Low_complexity Low_complexity 74 86 0 286 229 0 16 chr1 8003738 8003799 -274189865 + L2 LINE L2 3254 3313 0 181 321 0 25 chr1 8003864 8003945 -274189719 + L2 LINE L2 2174 2252 -1062 2304 113 0 3 chr1 8004301 8004630 -274189034 - AluSg SINE Alu 0 328 1 1966 129 50 4 chr1 8004648 8004928 -274188736 - AluSq SINE Alu -20 293 1 695 183 0 0 chr1 8005626 8005741 -274187923 + AluJo SINE Alu 1 115 -187 2759 72 3 8 chr1 8005741 8006113 -274187551 - THE1C LTR MaLR -4 371 1 1057 174 10 20 chr1 8006113 8006309 -274187355 + AluJo SINE Alu 106 299 -13 856 202 39 6 chr1 8006413 8006591 -274187073 - MIR SINE MIR -60 202 19 1242 185 14 14 chr1 8006921 8007143 -274186521 + AluJb SINE Alu 81 302 -10 1678 172 0 47 chr1 8007581 8007900 -274185764 + AluJb SINE Alu 1 304 -8 1550 121 3 121 chr1 8008059 8008239 -274185425 - AluSc SINE Alu -17 292 167 243 0 0 0 chr1 8008239 8008266 -274185398 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1550 121 3 121 chr1 8008266 8008416 -274185248 - AluSc SINE Alu -142 167 1 281 122 20 0 chr1 8008418 8008467 -274185197 - AluSg/x SINE Alu -170 130 81 279 211 26 0 chr1 8008571 8008647 -274185017 + (CAAT)n Simple_repeat Simple_repeat 1 78 0 305 263 7 0 chr1 8008655 8008792 -274184872 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 1011 152 0 0 chr1 8008817 8008995 -274184669 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 374 260 0 17 chr1 8009014 8009191 -274184473 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 210 318 0 0 chr1 8009192 8009255 -274184409 + (CCCA)n Simple_repeat Simple_repeat 4 66 0 378 0 0 0 chr1 8010144 8010186 -274183478 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 118 0 0 chr1 8010186 8010237 -274183427 + (GA)n Simple_repeat Simple_repeat 2 52 0 1858 132 18 14 chr1 8010238 8010518 -274183146 - AluJb SINE Alu -31 281 1 2296 80 0 7 chr1 8010861 8011169 -274182495 + AluSx SINE Alu 1 306 0 2445 87 3 0 chr1 8011580 8011880 -274181784 - AluSx SINE Alu -11 301 1 22 35 0 0 chr1 8012614 8012643 -274181021 + GC_rich Low_complexity Low_complexity 1 29 0 247 51 0 0 chr1 8013000 8013039 -274180625 + ORSL DNA AcHobo 171 209 -66 261 291 164 0 chr1 8013154 8013264 -274180400 - L2 LINE L2 -34 3279 3152 693 85 94 0 chr1 8013295 8013401 -274180263 - FLAM_C SINE Alu -16 117 2 322 315 44 64 chr1 8013407 8013595 -274180069 - L2 LINE L2 -114 3199 3020 2161 110 14 3 chr1 8013595 8013887 -274179777 + AluSx SINE Alu 1 295 -17 322 315 44 64 chr1 8013887 8014041 -274179623 - L2 LINE L2 -293 3020 2864 261 256 141 16 chr1 8015032 8015153 -274178511 - MLT1J2 LTR MaLR -46 404 269 1733 167 30 17 chr1 8017075 8017374 -274176290 + AluJb SINE Alu 1 303 -9 219 304 0 0 chr1 8017486 8017611 -274176053 + (CA)n Simple_repeat Simple_repeat 1 125 0 464 161 21 0 chr1 8018270 8018363 -274175301 - MER53 DNA DNA -2 187 93 246 278 53 53 chr1 8018777 8018986 -274174678 - L1ME3A LINE L1 0 6170 5962 378 233 273 7 chr1 8019020 8019170 -274174494 - LTR16C LTR ERVL 0 491 302 1705 161 7 20 chr1 8019173 8019478 -274174186 - MLT1A1 LTR MaLR -64 301 1 261 286 122 0 chr1 8019478 8019576 -274174088 - LTR16C LTR ERVL -222 269 160 967 170 29 164 chr1 8019597 8019817 -274173847 - MLT1B LTR MaLR 0 390 201 280 143 0 0 chr1 8019838 8019887 -274173777 - Alu SINE Alu 0 300 252 1697 245 70 38 chr1 8020043 8020468 -274173196 - L1ME3A LINE L1 -239 5931 5476 2089 123 19 23 chr1 8020468 8020778 -274172886 - AluSq SINE Alu -4 309 1 1697 245 70 38 chr1 8020778 8021009 -274172655 - L1ME3A LINE L1 -694 5476 5254 180 0 0 0 chr1 8021023 8021043 -274172621 + (T)n Simple_repeat Simple_repeat 1 20 0 332 279 88 0 chr1 8021080 8021227 -274172437 + L1M4 LINE L1 5006 5165 -981 1996 153 0 7 chr1 8021234 8021528 -274172136 + AluJb SINE Alu 1 292 -20 265 263 61 18 chr1 8021547 8021661 -274172003 - L1ME3A LINE L1 -1568 4578 4460 1442 85 0 20 chr1 8021675 8021874 -274171790 + AluSg/x SINE Alu 117 311 -1 726 263 29 55 chr1 8021876 8022235 -274171429 - L1ME3A LINE L1 -2338 3808 3439 405 58 0 0 chr1 8022235 8022287 -274171377 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 971 163 218 28 chr1 8022287 8022539 -274171125 - AluSg SINE Alu 0 300 1 1619 112 166 87 chr1 8022671 8022889 -274170775 + MLT1B LTR MaLR 1 200 -190 1860 151 131 13 chr1 8022889 8023272 -274170392 + MSTA LTR MaLR 1 428 0 1619 112 166 87 chr1 8023272 8023330 -274170334 + MLT1B LTR MaLR 200 252 -138 639 151 109 0 chr1 8023330 8023449 -274170215 + FLAM_C SINE Alu 1 132 -1 1619 112 166 87 chr1 8023449 8023527 -274170137 + MLT1B LTR MaLR 252 384 -6 444 223 28 97 chr1 8023574 8023636 -274170028 - L1ME3A LINE L1 -2885 3261 3196 2339 125 0 0 chr1 8023636 8023947 -274169717 + AluSx SINE Alu 1 311 -1 444 223 28 97 chr1 8023947 8024131 -274169533 - L1ME3A LINE L1 -2950 3196 3032 2147 144 0 3 chr1 8024131 8024444 -274169220 - AluJb SINE Alu 0 312 1 2085 121 7 0 chr1 8024467 8024777 -274168887 - AluSx SINE Alu -5 307 1 338 255 47 0 chr1 8024779 8024885 -274168779 - L1ME3A LINE L1 -3113 3033 2923 274 206 21 184 chr1 8025115 8025185 -274168479 + L2 LINE L2 2245 2325 -989 2095 114 3 0 chr1 8025185 8025503 -274168161 - AluSp SINE Alu 0 313 1 274 206 21 184 chr1 8025503 8025517 -274168147 + L2 LINE L2 2325 2340 -974 1963 130 3 3 chr1 8025517 8025816 -274167848 - AluSx SINE Alu -13 299 1 274 206 21 184 chr1 8025816 8025871 -274167793 + L2 LINE L2 2340 2362 -952 805 160 77 50 chr1 8025871 8026052 -274167612 + AluJo SINE Alu 1 186 -126 1748 148 7 10 chr1 8026158 8026463 -274167201 + AluSx SINE Alu 1 304 -8 1006 139 0 0 chr1 8026463 8026637 -274167027 + AluSg/x SINE Alu 134 307 0 342 0 0 0 chr1 8026981 8027019 -274166645 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 1993 98 0 4 chr1 8027023 8027299 -274166365 - AluSx SINE Alu -37 275 1 431 186 10 49 chr1 8027299 8027401 -274166263 - MER39 LTR ERV1 -609 98 1 352 338 1 23 chr1 8030349 8030482 -274163182 - MIR3 SINE MIR -51 157 42 2111 124 0 0 chr1 8030865 8031164 -274162500 + AluSq SINE Alu 1 299 -14 2249 95 0 0 chr1 8031505 8031800 -274161864 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr1 8031800 8031833 -274161831 + (TA)n Simple_repeat Simple_repeat 1 33 0 2226 97 0 0 chr1 8032102 8032401 -274161263 - AluSq SINE Alu -9 304 6 36 23 0 0 chr1 8032574 8032617 -274161047 + AT_rich Low_complexity Low_complexity 1 43 0 1852 145 3 13 chr1 8032919 8033223 -274160441 + AluJb SINE Alu 1 301 -11 499 251 46 27 chr1 8033337 8033595 -274160069 + MLT1J2 LTR MaLR 34 329 -121 252 275 50 38 chr1 8033737 8033817 -274159847 - L3 LINE CR1 -958 619 539 4113 133 31 2 chr1 8033966 8034583 -274159081 + MER41B LTR ERV1 1 635 0 1174 113 0 0 chr1 8035062 8035230 -274158434 + AluSq SINE Alu 140 307 -6 1960 128 0 39 chr1 8036783 8037089 -274156575 - AluJo SINE Alu -18 294 1 373 317 7 7 chr1 8037284 8037426 -274156238 - L1M4 LINE L1 -3329 2817 2676 2097 108 0 10 chr1 8037913 8038218 -274155446 + AluSx SINE Alu 1 302 -10 1877 123 0 3 chr1 8038218 8038502 -274155162 + AluY SINE Alu 1 284 -27 531 218 0 0 chr1 8038618 8038719 -274154945 + U6 snRNA snRNA 1 101 -6 253 230 159 0 chr1 8038959 8039085 -274154579 + L1M4 LINE L1 2897 3042 -3104 644 302 115 75 chr1 8039093 8039188 -274154476 + L1M4 LINE L1 3214 3304 -2842 2170 107 0 0 chr1 8039188 8039488 -274154176 + AluSg SINE Alu 9 308 -2 2023 117 0 29 chr1 8039491 8039798 -274153866 + AluSx SINE Alu 1 298 -14 644 302 115 75 chr1 8039798 8040114 -274153550 + L1M4 LINE L1 3305 3659 -2487 2086 106 13 3 chr1 8040114 8040416 -274153248 + AluSg SINE Alu 1 305 -5 644 302 115 75 chr1 8040416 8040546 -274153118 + L1M4 LINE L1 3659 3782 -2364 1711 165 10 3 chr1 8040617 8040908 -274152756 - AluJb SINE Alu -19 293 1 512 201 120 37 chr1 8040908 8040942 -274152722 + L1M4 LINE L1 4386 4416 -1730 1958 133 3 3 chr1 8040942 8041251 -274152413 + AluSx SINE Alu 1 309 -3 512 201 120 37 chr1 8041251 8041438 -274152226 + L1M4 LINE L1 4416 4610 -1536 521 95 0 0 chr1 8041476 8041550 -274152114 + AluSp/q SINE Alu 231 304 -9 295 188 24 35 chr1 8041552 8041637 -274152027 + L1M4 LINE L1 4638 4721 -1425 354 295 33 0 chr1 8041646 8041768 -274151896 - L1MC/D LINE L1 -2053 5755 5630 336 283 65 7 chr1 8041759 8041897 -274151767 - L1MC/D LINE L1 -2401 5407 5262 * 506 127 0 0 chr1 8041900 8041979 -274151685 - MER116 DNA Mariner -1 79 1 1948 131 3 0 chr1 8042032 8042322 -274151342 - AluSx SINE Alu -21 291 1 236 285 118 82 chr1 8042322 8042513 -274151151 - L1MC/D LINE L1 -981 5165 4982 2106 102 7 0 chr1 8042513 8042807 -274150857 + AluSc SINE Alu 3 298 -11 236 285 118 82 chr1 8042807 8042996 -274150668 - L1MC/D LINE L1 -1164 4982 4801 1600 172 10 7 chr1 8042996 8043298 -274150366 - AluJb SINE Alu -9 303 1 236 285 118 82 chr1 8043298 8043474 -274150190 - L1MC/D LINE L1 -1345 4801 4588 314 261 71 43 chr1 8043500 8043919 -274149745 - L1MC/D LINE L1 -2695 3451 2933 2255 113 0 0 chr1 8043919 8044228 -274149436 - AluSg SINE Alu -1 309 1 314 261 71 43 chr1 8044228 8044373 -274149291 - L1MC/D LINE L1 -3213 2933 2793 288 268 134 39 chr1 8044373 8044500 -274149164 - MIR3 SINE MIR -67 141 3 21 0 0 0 chr1 8044600 8044621 -274149043 + AT_rich Low_complexity Low_complexity 1 21 0 2273 94 0 0 chr1 8045082 8045380 -274148284 + AluSx SINE Alu 1 298 -14 224 266 55 37 chr1 8047145 8047254 -274146410 + L2 LINE L2 1301 1411 -1903 319 282 148 52 chr1 8047495 8047920 -274145744 + MLT1J LTR MaLR 1 466 -45 3028 137 20 29 chr1 8047966 8048051 -274145613 + L1MA8 LINE L1 5539 5623 -677 2321 91 51 46 chr1 8048051 8048424 -274145240 - THE1C LTR MaLR 0 375 1 3028 137 20 29 chr1 8048424 8048837 -274144827 + L1MA8 LINE L1 5623 6002 -298 654 206 8 8 chr1 8048837 8048968 -274144696 + FLAM_A SINE Alu 2 132 -1 3028 137 20 29 chr1 8048968 8049075 -274144589 + L1MA8 LINE L1 6002 6108 -192 1002 176 16 27 chr1 8049101 8049155 -274144509 - AluSx SINE Alu -126 186 133 2067 98 3 33 chr1 8049155 8049462 -274144202 - AluSg1 SINE Alu -11 298 1 1002 176 16 27 chr1 8049462 8049595 -274144069 - AluSx SINE Alu -179 133 1 1599 126 0 41 chr1 8049628 8049949 -274143715 + AluSx SINE Alu 1 309 0 448 100 0 0 chr1 8049949 8050009 -274143655 + Alu SINE Alu 230 289 -21 1265 134 0 5 chr1 8050026 8050236 -274143428 - AluSg/x SINE Alu 0 306 98 1631 142 3 42 chr1 8050359 8050648 -274143016 + AluJb SINE Alu 5 282 -30 785 183 0 0 chr1 8050665 8050791 -274142873 - FLAM_C SINE Alu -3 130 5 252 0 0 0 chr1 8050808 8050836 -274142828 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 204 311 20 66 chr1 8050838 8050989 -274142675 - L3b LINE CR1 -258 1325 1182 233 0 62 0 chr1 8051257 8051289 -274142375 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1899 133 0 3 chr1 8051293 8051578 -274142086 - AluSg SINE Alu -26 284 1 2102 107 0 0 chr1 8051602 8051891 -274141773 - AluSx SINE Alu -17 295 7 1994 112 3 23 chr1 8051943 8052272 -274141392 + AluSq SINE Alu 1 313 0 1306 74 0 0 chr1 8052272 8052434 -274141230 + AluSg/x SINE Alu 134 295 -17 1523 164 0 48 chr1 8052593 8052903 -274140761 - AluJb SINE Alu -8 304 10 1119 176 27 27 chr1 8053350 8053572 -274140092 - AluJb SINE Alu -10 302 81 896 202 39 6 chr1 8053902 8054080 -274139584 + MIR SINE MIR 19 202 -60 959 174 10 20 chr1 8054184 8054380 -274139284 - AluJo SINE Alu -13 299 106 2903 72 3 8 chr1 8054380 8054753 -274138911 + THE1C LTR MaLR 1 371 -4 723 183 0 0 chr1 8054753 8054867 -274138797 - AluJo SINE Alu -187 115 1 2134 122 3 3 chr1 8055565 8055877 -274137787 + AluSq SINE Alu 1 312 -1 613 237 34 31 chr1 8056014 8056223 -274137441 - MIR SINE MIR -49 213 7 2341 74 0 0 chr1 8056271 8056569 -274137095 - AluSq SINE Alu -15 298 1 322 282 237 1 chr1 8057367 8057555 -274136109 - MIR SINE MIR -11 251 23 460 278 92 21 chr1 8057891 8058146 -274135518 + L1M4 LINE L1 2229 2507 -3639 2010 98 0 80 chr1 8058146 8058471 -274135193 + AluSx SINE Alu 1 299 -13 460 278 92 21 chr1 8058471 8058499 -274135165 + L1M4 LINE L1 2507 2532 -3614 438 125 0 9 chr1 8058549 8058812 -274134852 + AluSq SINE Alu 1 309 -4 347 309 31 24 chr1 8058815 8058892 -274134772 + L1M4 LINE L1 2609 2684 -3462 2164 103 0 0 chr1 8058892 8059193 -274134471 - AluSg SINE Alu -9 301 1 347 309 31 24 chr1 8059193 8059403 -274134261 + L1M4 LINE L1 2684 2898 -3248 23 0 0 0 chr1 8059430 8059453 -274134211 + AT_rich Low_complexity Low_complexity 1 23 0 1317 290 79 16 chr1 8059480 8060274 -274133390 + L1M4 LINE L1 3002 3845 -2301 778 218 58 180 chr1 8060304 8061044 -274132620 + MER21B LTR ERV1 13 733 -198 470 255 69 71 chr1 8061131 8061289 -274132375 + L1M4 LINE L1 3890 4047 -2099 2027 127 3 3 chr1 8061289 8061597 -274132067 - AluSq SINE Alu -5 308 1 470 255 69 71 chr1 8061597 8061917 -274131747 + L1M4 LINE L1 4047 4367 -1779 2152 92 3 3 chr1 8062041 8062335 -274131329 - AluSg SINE Alu -16 294 1 1920 98 63 3 chr1 8062337 8062622 -274131042 - AluSg SINE Alu -8 302 1 839 156 38 44 chr1 8062690 8062850 -274130814 + AluJb SINE Alu 137 295 -17 1326 203 48 29 chr1 8062855 8063165 -274130499 + L1ME2 LINE L1 5727 6042 -122 1623 161 10 30 chr1 8063165 8063464 -274130200 - AluJb SINE Alu -19 293 1 1937 110 18 4 chr1 8063482 8063763 -274129901 - AluSg SINE Alu -25 285 1 364 221 11 0 chr1 8063782 8063877 -274129787 + L1MA10 LINE L1 6225 6320 -14 1493 153 38 24 chr1 8063955 8064243 -274129421 - AluJo SINE Alu -9 303 12 1398 111 0 0 chr1 8064260 8064450 -274129214 - AluSg/x SINE Alu -13 297 108 444 131 0 0 chr1 8064450 8064511 -274129153 - AluS SINE Alu -247 63 3 829 143 0 7 chr1 8064521 8064661 -274129003 - AluJb SINE Alu -18 294 156 2069 116 3 3 chr1 8065245 8065546 -274128118 - AluSx SINE Alu -11 301 1 2174 91 0 10 chr1 8065829 8065964 -274127700 + AluSx SINE Alu 1 136 -176 2347 70 0 0 chr1 8065964 8066263 -274127401 + AluY SINE Alu 1 299 -12 2174 91 0 10 chr1 8066263 8066424 -274127240 + AluSx SINE Alu 136 294 -18 1717 160 3 22 chr1 8066506 8066824 -274126840 + AluJb SINE Alu 1 312 0 917 173 0 0 chr1 8066824 8066986 -274126678 + AluJo/FRAM SINE Alu 144 305 -7 482 325 202 22 chr1 8067232 8067598 -274126066 + L2 LINE L2 2840 3271 -1 895 110 0 0 chr1 8067925 8068052 -274125612 - FLAM_C SINE Alu -16 127 1 654 101 0 0 chr1 8068224 8068313 -274125351 + AluSx SINE Alu 4 92 -221 2271 81 0 7 chr1 8068313 8068609 -274125055 + AluY SINE Alu 1 294 -17 1468 92 53 0 chr1 8068609 8068813 -274124851 + AluSx SINE Alu 71 287 -23 27 29 0 0 chr1 8069550 8069584 -274124080 + AT_rich Low_complexity Low_complexity 1 34 0 256 188 29 0 chr1 8069758 8069827 -274123837 + CT-rich Low_complexity Low_complexity 2 72 0 1802 128 4 11 chr1 8070226 8070500 -274123164 - AluSq SINE Alu -41 272 1 2062 116 7 19 chr1 8070509 8070682 -274122982 - AluSp SINE Alu -7 306 137 2092 96 28 0 chr1 8070682 8070973 -274122691 - AluSg SINE Alu -9 301 3 2062 116 7 19 chr1 8070973 8071109 -274122555 - AluSp SINE Alu -176 137 1 2001 119 0 0 chr1 8071725 8072011 -274121653 - AluSx SINE Alu -18 294 9 351 0 0 0 chr1 8072057 8072096 -274121568 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr1 8072644 8072678 -274120986 + AT_rich Low_complexity Low_complexity 1 34 0 724 157 9 0 chr1 8072678 8072793 -274120871 - AluJb SINE Alu -194 118 3 580 275 30 67 chr1 8073500 8073596 -274120068 - MLT1I LTR MaLR -150 259 161 2117 138 32 35 chr1 8073596 8073972 -274119692 - THE1C LTR MaLR 0 375 1 580 275 30 67 chr1 8073972 8074102 -274119562 - MLT1I LTR MaLR -248 161 42 1574 167 13 45 chr1 8074102 8074241 -274119423 + AluJo SINE Alu 1 143 -169 2040 73 0 8 chr1 8074241 8074500 -274119164 + AluSc SINE Alu 40 296 -13 1574 167 13 45 chr1 8074500 8074671 -274118993 + AluJo SINE Alu 143 301 -11 580 275 30 67 chr1 8074671 8074712 -274118952 - MLT1I LTR MaLR -367 42 1 1895 185 22 53 chr1 8074863 8075042 -274118622 + L1MB8 LINE L1 5724 5907 -271 2401 66 3 13 chr1 8075042 8075343 -274118321 + AluY SINE Alu 2 299 -12 1895 185 22 53 chr1 8075343 8075616 -274118048 + L1MB8 LINE L1 5907 6162 -16 289 264 88 22 chr1 8075999 8076090 -274117574 + L2 LINE L2 3155 3251 -21 217 104 0 42 chr1 8076092 8076140 -274117524 + (TAA)n Simple_repeat Simple_repeat 3 48 0 550 75 0 0 chr1 8076204 8076271 -274117393 - AluSp/q SINE Alu -84 229 163 812 132 5 138 chr1 8076275 8076428 -274117236 + L1MB7 LINE L1 6002 6127 -57 1842 138 38 28 chr1 8076428 8076717 -274116947 + AluJb SINE Alu 1 292 -20 812 132 5 138 chr1 8076717 8076752 -274116912 + L1MB7 LINE L1 6127 6165 -19 2259 121 0 0 chr1 8078088 8078393 -274115271 + AluSq SINE Alu 1 305 -8 1266 260 39 41 chr1 8078702 8078903 -274114761 + MLT2C2 LTR ERVL 1 201 -263 2434 77 3 10 chr1 8078903 8079215 -274114449 + AluSg SINE Alu 1 310 0 2324 109 3 0 chr1 8079217 8079521 -274114143 + AluSp SINE Alu 1 305 -8 1266 260 39 41 chr1 8079521 8079563 -274114101 + MLT2C2 LTR ERVL 202 243 -221 752 172 0 26 chr1 8079563 8079701 -274113963 + L1MB3 LINE L1 6035 6170 -13 1895 193 25 6 chr1 8079701 8080058 -274113606 + MLT1A1 LTR MaLR 1 364 -1 752 172 0 26 chr1 8080058 8080070 -274113594 + L1MB3 LINE L1 6170 6181 -2 1266 260 39 41 chr1 8080070 8080083 -274113581 + MLT2C2 LTR ERVL 243 255 -209 1821 145 0 30 chr1 8080083 8080379 -274113285 + AluJb SINE Alu 1 287 -25 1266 260 39 41 chr1 8080379 8080582 -274113082 + MLT2C2 LTR ERVL 255 464 0 289 304 63 0 chr1 8081353 8081432 -274112232 + MIR SINE MIR 23 106 -102 380 144 10 31 chr1 8081570 8081667 -274111997 + CT-rich Low_complexity Low_complexity 3 97 0 793 149 0 28 chr1 8081667 8081848 -274111816 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1028 105 0 0 chr1 8081850 8081983 -274111681 - FLAM_C SINE Alu 0 133 1 1921 233 136 21 chr1 8082188 8082848 -274110816 - MER21B LTR ERV1 -127 736 1 2440 92 0 0 chr1 8082878 8083183 -274110481 - AluSx SINE Alu -7 305 1 1094 170 0 0 chr1 8083547 8083718 -274109946 + AluJb SINE Alu 130 300 -12 1894 146 3 55 chr1 8084938 8085267 -274108397 + AluJb SINE Alu 1 312 0 5148 110 100 3 chr1 8085794 8086547 -274107117 + LTR12 LTR ERV1 1 826 0 316 321 121 0 chr1 8086699 8086839 -274106825 + MIR3 SINE MIR 51 207 -1 2199 120 0 7 chr1 8086942 8087241 -274106423 - AluSx SINE Alu -15 297 1 1591 161 49 18 chr1 8087573 8087858 -274105806 + AluJb SINE Alu 1 294 -18 2097 187 29 37 chr1 8088101 8088224 -274105440 - L1MD3 LINE L1 0 7995 7873 2326 103 7 0 chr1 8088224 8088524 -274105140 - AluSx SINE Alu -6 306 5 2097 187 29 37 chr1 8088524 8088930 -274104734 - L1MD3 LINE L1 -122 7873 5815 225 108 0 0 chr1 8088931 8088968 -274104696 + (T)n Simple_repeat Simple_repeat 1 37 0 1132 132 5 63 chr1 8088983 8089173 -274104491 - AluJo SINE Alu -133 179 1 598 226 0 0 chr1 8089173 8089297 -274104367 - L1MD3 LINE L1 -519 5825 5702 2142 144 0 0 chr1 8089455 8089761 -274103903 + AluSx SINE Alu 1 306 -6 696 156 0 67 chr1 8089934 8090069 -274103595 + FLAM_C SINE Alu 14 139 -4 225 253 152 72 chr1 8090518 8090553 -274103111 - HAL1 LINE L1 -125 2382 2351 1173 83 6 24 chr1 8090553 8090721 -274102943 - L1PA10 LINE L1 -3 6165 6001 225 253 152 72 chr1 8090721 8090800 -274102864 - HAL1 LINE L1 -156 2351 2280 2190 101 3 10 chr1 8090800 8091098 -274102566 - AluSx SINE Alu -16 296 1 225 253 152 72 chr1 8091098 8091604 -274102060 - HAL1 LINE L1 -227 2280 1675 296 158 66 26 chr1 8091933 8092009 -274101655 - MER5B DNA MER1_type -95 83 5 2362 98 0 19 chr1 8092354 8092671 -274100993 - AluY SINE Alu 0 311 1 1964 135 45 0 chr1 8092720 8093008 -274100656 + AluJb SINE Alu 1 301 -11 278 323 8 53 chr1 8093317 8093450 -274100214 + MIR SINE MIR 56 182 -80 672 205 145 0 chr1 8093794 8093960 -274099704 - MLT1B LTR MaLR 0 390 201 2027 150 0 3 chr1 8093990 8094303 -274099361 - AluJb SINE Alu 0 312 1 2342 80 0 10 chr1 8094353 8094679 -274098985 - AluY SINE Alu 0 311 1 586 176 55 93 chr1 8094815 8094997 -274098667 - MLT1B LTR MaLR -211 179 5 279 0 0 0 chr1 8094999 8095030 -274098634 + (CA)n Simple_repeat Simple_repeat 1 31 0 1829 176 28 11 chr1 8095253 8095616 -274098048 + L1MA4 LINE L1 5914 6282 -18 2201 119 0 0 chr1 8095617 8095911 -274097753 - AluSx SINE Alu -18 294 1 185 62 0 31 chr1 8096820 8096852 -274096812 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1937 141 0 14 chr1 8096854 8097138 -274096526 - AluJb SINE Alu -28 284 5 2300 101 0 0 chr1 8097314 8097610 -274096054 + AluSc SINE Alu 1 296 -13 791 211 78 14 chr1 8097681 8097899 -274095765 + Zaphod DNA AcHobo 3800 4031 0 384 217 30 55 chr1 8097917 8097948 -274095716 - MLT1J LTR MaLR -172 443 413 1803 148 42 0 chr1 8097948 8098232 -274095432 - AluJo SINE Alu -16 296 1 384 217 30 55 chr1 8098232 8098348 -274095316 - MLT1J LTR MaLR -202 413 224 2352 112 0 3 chr1 8098467 8098780 -274094884 - AluSq SINE Alu -1 312 1 312 70 0 0 chr1 8098781 8098824 -274094840 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1075 134 0 0 chr1 8098824 8098973 -274094691 - AluSg/x SINE Alu -27 283 135 286 288 0 12 chr1 8099008 8099088 -274094576 - MLT1L LTR MaLR -536 79 1 2060 118 3 58 chr1 8099989 8100319 -274093345 - AluSx SINE Alu 0 312 1 626 189 39 8 chr1 8100614 8100741 -274092923 - FLAM_C SINE Alu -2 131 1 1937 139 7 10 chr1 8100791 8101094 -274092570 + AluJb SINE Alu 1 302 -10 2369 82 0 13 chr1 8102164 8102469 -274091195 - AluY SINE Alu -10 301 1 2121 120 3 7 chr1 8102776 8103077 -274090587 - AluJo SINE Alu -2 310 11 1643 172 43 13 chr1 8103955 8104258 -274089406 + AluSx SINE Alu 1 312 0 838 281 46 7 chr1 8104556 8104862 -274088802 + MLT2E LTR ERVL 2 319 -309 425 265 75 40 chr1 8104957 8105157 -274088507 + L1MC5 LINE L1 7717 7923 -38 746 152 91 15 chr1 8106431 8106563 -274087101 + FLAM_C SINE Alu 2 143 0 32 43 0 0 chr1 8106563 8106609 -274087055 + AT_rich Low_complexity Low_complexity 1 46 0 533 202 0 0 chr1 8106617 8106706 -274086958 - AluJb SINE Alu -82 230 142 567 301 62 51 chr1 8106718 8107127 -274086537 + MER34 LTR ERV1 50 466 -76 2028 140 3 31 chr1 8107127 8107448 -274086216 - AluJb SINE Alu 0 312 1 567 301 62 51 chr1 8107448 8107526 -274086138 + MER34 LTR ERV1 466 542 0 349 267 67 7 chr1 8107769 8107919 -274085745 - L1MA10 LINE L1 0 6334 6176 2263 100 7 0 chr1 8107964 8108253 -274085411 + AluSx SINE Alu 1 291 -21 2582 79 0 0 chr1 8108665 8108969 -274084695 - AluSx SINE Alu -8 304 1 1785 159 0 40 chr1 8108983 8109285 -274084379 - AluJb SINE Alu -22 290 1 1782 151 10 30 chr1 8109359 8109657 -274084007 + AluJo SINE Alu 14 305 -7 2058 121 109 73 chr1 8109843 8110022 -274083642 + MSTA LTR MaLR 1 172 -256 2541 76 0 0 chr1 8110022 8110325 -274083339 + AluSx SINE Alu 1 303 -9 2058 121 109 73 chr1 8110325 8110557 -274083107 + MSTA LTR MaLR 172 427 -1 2334 94 3 0 chr1 8110667 8110965 -274082699 - AluSx SINE Alu -13 299 1 2207 113 27 0 chr1 8111141 8111442 -274082222 + AluSx SINE Alu 1 309 -3 1922 151 3 40 chr1 8111592 8111916 -274081748 + AluJo SINE Alu 1 312 0 215 207 0 52 chr1 8112378 8112436 -274081228 + CT-rich Low_complexity Low_complexity 5 59 0 2206 163 14 8 chr1 8112487 8112850 -274080814 - MLT1A1 LTR MaLR 0 365 1 2272 97 82 48 chr1 8112973 8113282 -274080382 + THE1B LTR MaLR 1 325 -39 2297 105 3 0 chr1 8113282 8113586 -274080078 - AluSq SINE Alu -8 305 1 2272 97 82 48 chr1 8113586 8113628 -274080036 + THE1B LTR MaLR 325 364 0 1843 214 165 11 chr1 8114081 8114249 -274079415 + L1MC4 LINE L1 6459 6600 -1442 2218 111 10 7 chr1 8114249 8114547 -274079117 - AluSx SINE Alu -13 299 1 1843 214 165 11 chr1 8114547 8114905 -274078759 + L1MC4 LINE L1 6600 7066 -976 1079 286 186 19 chr1 8114913 8115160 -274078504 + L1MC4 LINE L1 7240 7444 -598 2994 162 25 102 chr1 8115160 8115425 -274078239 + LTR8 LTR ERV1 1 285 -406 2458 89 3 6 chr1 8115425 8115738 -274077926 + AluSp SINE Alu 1 312 -1 2994 162 25 102 chr1 8115738 8116218 -274077446 + LTR8 LTR ERV1 285 689 -2 1079 286 186 19 chr1 8116218 8116433 -274077231 + L1MC4 LINE L1 7444 7622 -420 4040 91 19 2 chr1 8116433 8116974 -274076690 + MER41A LTR ERV1 1 550 -4 1079 286 186 19 chr1 8116974 8117079 -274076585 + L1MC4 LINE L1 7622 7903 -139 352 381 30 0 chr1 8117394 8117528 -274076136 + L2 LINE L2 3175 3312 -1 1968 160 3 3 chr1 8117593 8117905 -274075759 - AluJb SINE Alu 0 312 1 331 256 104 26 chr1 8119252 8119512 -274074152 - LTR48 LTR ERV1 -3 738 387 413 279 16 23 chr1 8119610 8119739 -274073925 - MER34 LTR ERV1 -411 131 4 21 36 0 0 chr1 8119748 8119776 -274073888 + AT_rich Low_complexity Low_complexity 1 28 0 2280 127 0 0 chr1 8119777 8120085 -274073579 + AluSx SINE Alu 1 308 -4 876 236 56 23 chr1 8120180 8120396 -274073268 + MIR SINE MIR 28 250 -12 2324 113 0 3 chr1 8120576 8120886 -274072778 - AluSx SINE Alu -3 309 1 2431 85 3 0 chr1 8121540 8121846 -274071818 + AluY SINE Alu 1 307 -4 300 27 0 0 chr1 8122219 8122256 -274071408 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1878 113 50 7 chr1 8123071 8123353 -274070311 - AluSx SINE Alu -18 294 1 1661 180 65 0 chr1 8124258 8124536 -274069128 - AluJo SINE Alu -16 296 1 274 182 0 39 chr1 8124541 8124618 -274069046 - L1MC2 LINE L1 0 6344 6271 36 23 0 0 chr1 8124727 8124770 -274068894 + AT_rich Low_complexity Low_complexity 1 43 0 2000 145 3 13 chr1 8125072 8125376 -274068288 + AluJb SINE Alu 1 301 -11 466 224 56 8 chr1 8125482 8125607 -274068057 + MLT1J2 LTR MaLR 23 153 -297 244 254 16 0 chr1 8125686 8125749 -274067915 + MLT1J2 LTR MaLR 266 329 -121 255 286 41 61 chr1 8125873 8125971 -274067693 - L3 LINE CR1 -943 634 539 4138 133 31 2 chr1 8126120 8126737 -274066927 + MER41B LTR ERV1 1 635 0 1253 113 0 0 chr1 8127216 8127384 -274066280 + AluSq SINE Alu 140 307 -6 2110 128 0 39 chr1 8128938 8129244 -274064420 - AluJo SINE Alu -18 294 1 355 317 7 7 chr1 8129439 8129581 -274064083 - L1M4 LINE L1 -3329 2817 2676 2243 108 0 10 chr1 8130068 8130372 -274063292 + AluSx SINE Alu 1 301 -11 2009 119 0 11 chr1 8130372 8130657 -274063007 + AluSc SINE Alu 1 282 -27 502 218 0 0 chr1 8130773 8130874 -274062790 + U6 snRNA snRNA 1 101 -6 236 230 159 0 chr1 8131114 8131240 -274062424 + L1M4 LINE L1 2897 3042 -3104 2393 85 0 7 chr1 8131336 8131643 -274062021 + AluSc SINE Alu 2 306 -3 416 153 0 12 chr1 8131648 8131733 -274061931 - MER96B DNA MER1_type? -266 151 68 306 164 33 0 chr1 8131936 8131997 -274061667 + MER45 DNA AcHobo 44 106 -1475 239 175 0 0 chr1 8131991 8132031 -274061633 + MER45 DNA AcHobo 1542 1581 0 * 686 239 137 9 chr1 8132951 8133241 -274060423 + MER58B DNA MER1_type 6 341 0 2488 65 0 0 chr1 8134079 8134369 -274059295 + AluY SINE Alu 1 290 -21 2844 80 0 3 chr1 8134400 8134763 -274058901 + THE1B LTR MaLR 1 362 -2 572 310 57 27 chr1 8135016 8135351 -274058313 - L1ME4a LINE L1 -255 5866 5522 2388 100 0 0 chr1 8135368 8135668 -274057996 - AluSg SINE Alu -10 300 1 1652 130 8 8 chr1 8137060 8137333 -274056331 - AluJb SINE Alu 0 319 47 1985 145 3 0 chr1 8138063 8138353 -274055311 + AluJb SINE Alu 1 291 -21 907 117 0 0 chr1 8138361 8138481 -274055183 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 8138499 8138574 -274055090 + A-rich Low_complexity Low_complexity 1 75 0 2488 77 3 0 chr1 8138987 8139286 -274054378 + AluSx SINE Alu 1 300 -12 2504 51 3 0 chr1 8139706 8140000 -274053664 + AluY SINE Alu 1 295 -16 1037 194 0 0 chr1 8140139 8140314 -274053350 - AluJ SINE Alu -13 299 125 90 77 0 0 chr1 8140314 8140509 -274053155 + AT_rich Low_complexity Low_complexity 1 195 0 870 143 0 0 chr1 8140516 8140635 -274053029 - AluJ SINE Alu -193 119 1 2426 97 0 0 chr1 8142859 8143169 -274050495 - AluSq SINE Alu -3 310 1 715 135 0 0 chr1 8143548 8143659 -274050005 - HY1 scRNA scRNA -1 111 1 2172 110 3 3 chr1 8143665 8143977 -274049687 - AluSx SINE Alu 0 312 1 690 225 22 0 chr1 8144060 8144198 -274049466 - FLAM_C SINE Alu -1 142 2 2444 246 44 28 chr1 8144501 8144722 -274048942 - MER82 DNA MER2_type 0 653 437 2320 87 0 3 chr1 8144722 8145029 -274048635 - AluSp SINE Alu 0 306 1 2444 246 44 28 chr1 8145029 8145447 -274048217 - MER82 DNA MER2_type -216 437 3 2397 86 0 0 chr1 8148210 8148511 -274045153 - AluSg SINE Alu -9 301 1 1461 85 0 0 chr1 8149283 8149541 -274044123 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 1105 166 10 30 chr1 8149643 8149842 -274043822 + AluJo SINE Alu 16 210 -102 1426 89 0 31 chr1 8149858 8150049 -274043615 - AluSq SINE Alu -52 261 77 957 152 0 26 chr1 8150051 8150202 -274043462 + AluJo/FRAM SINE Alu 156 302 -10 794 131 26 13 chr1 8150205 8150871 -274042793 + (TG)n Simple_repeat Simple_repeat 1 674 0 239 270 34 27 chr1 8150886 8151034 -274042630 + (TG)n Simple_repeat Simple_repeat 1 149 0 671 163 59 0 chr1 8153385 8153520 -274040144 + L1MB4 LINE L1 6038 6180 0 411 226 111 51 chr1 8153668 8153903 -274039761 + HAL1 LINE L1 923 1171 -1336 902 328 75 34 chr1 8154008 8154572 -274039092 + ERVL LTR ERVL 4144 4730 -1034 201 301 136 19 chr1 8154847 8154950 -274038714 + MIR SINE MIR 94 208 -54 207 0 0 0 chr1 8155484 8155507 -274038157 + (CA)n Simple_repeat Simple_repeat 2 24 0 911 263 55 25 chr1 8156387 8156748 -274036916 + L1MC5 LINE L1 7073 7444 -517 1952 271 68 6 chr1 8156864 8157494 -274036170 + ERVL LTR ERVL 24 692 -5072 1549 218 13 7 chr1 8157688 8157986 -274035678 + AluJb SINE Alu 1 300 -12 380 175 25 0 chr1 8158387 8158467 -274035197 - L1 LINE L1 -2515 3631 3550 273 376 23 50 chr1 8158482 8158514 -274035150 - MIR SINE MIR -25 237 206 2100 117 35 0 chr1 8158514 8158796 -274034868 - AluSg SINE Alu -18 292 1 273 376 23 50 chr1 8158796 8158981 -274034683 - MIR SINE MIR -56 206 26 991 220 45 19 chr1 8159192 8159456 -274034208 + MER58 DNA MER1_type 1 271 -2149 937 119 0 0 chr1 8159556 8159682 -274033982 - AluJb SINE Alu -186 126 1 28 29 0 0 chr1 8159682 8159717 -274033947 + AT_rich Low_complexity Low_complexity 1 35 0 254 270 175 22 chr1 8161449 8161586 -274032078 + MIR SINE MIR 99 256 -6 265 249 74 85 chr1 8161857 8162046 -274031618 - L2 LINE L2 -368 2946 2760 256 128 0 0 chr1 8163081 8163120 -274030544 + Alu SINE Alu 1 39 -263 376 292 103 77 chr1 8163340 8163535 -274030129 + L2 LINE L2 3043 3242 -30 664 305 65 4 chr1 8164091 8164337 -274029327 - MIR SINE MIR 0 262 2 207 0 0 0 chr1 8164895 8164918 -274028746 + (A)n Simple_repeat Simple_repeat 1 23 0 650 286 84 26 chr1 8165103 8165330 -274028334 + MIR SINE MIR 2 241 -21 239 340 28 0 chr1 8166727 8166833 -274026831 + GA-rich Low_complexity Low_complexity 2 110 0 1074 243 80 10 chr1 8167086 8167386 -274026278 + L2 LINE L2 1598 1918 -1396 260 286 152 18 chr1 8168393 8168505 -274025159 + L2 LINE L2 3139 3265 -7 262 322 178 0 chr1 8169465 8169583 -274024081 - L2 LINE L2 0 3272 3134 828 228 94 20 chr1 8169764 8169966 -274023698 + MER20 DNA MER1_type 1 217 -2 306 261 33 33 chr1 8170096 8170188 -274023476 - L1MC4 LINE L1 -1343 6699 6608 746 207 60 0 chr1 8171451 8171601 -274022063 + MIR SINE MIR 77 235 -27 592 285 52 10 chr1 8171745 8171938 -274021726 - MIR SINE MIR -26 236 36 247 261 49 63 chr1 8171993 8172135 -274021529 - L2 LINE L2 -93 3220 3081 2293 119 0 0 chr1 8172628 8172923 -274020741 + AluSx SINE Alu 1 295 -17 605 199 175 18 chr1 8173065 8173231 -274020433 - MIR SINE MIR -39 223 32 269 208 19 0 chr1 8176452 8176505 -274017159 - L2 LINE L2 -215 3057 3004 282 326 90 17 chr1 8176524 8176702 -274016962 - L2 LINE L2 0 3313 3123 530 301 78 5 chr1 8176956 8177175 -274016489 + MIR SINE MIR 16 250 -12 181 319 0 29 chr1 8177201 8177270 -274016394 + MIR SINE MIR 190 256 -6 227 266 234 0 chr1 8177933 8178027 -274015637 - MIR SINE MIR -116 146 31 363 206 0 0 chr1 8178558 8178631 -274015033 - MER116 DNA Mariner -3 77 5 257 236 255 0 chr1 8178703 8178809 -274014855 - L2 LINE L2 -11 3302 3170 714 150 0 0 chr1 8179222 8179335 -274014329 + L1PB4 LINE L1 6037 6149 -7 664 261 74 82 chr1 8180152 8180555 -274013109 - MLT1L LTR MaLR -9 606 207 246 268 0 0 chr1 8180531 8180587 -274013077 - MLT1J LTR MaLR -345 166 111 * 4005 97 26 3 chr1 8180962 8181529 -274012135 + THE1A-int LTR MaLR 1001 1580 0 2697 82 6 0 chr1 8181529 8181882 -274011782 + THE1A LTR MaLR 1 355 0 1278 277 254 23 chr1 8182671 8183466 -274010198 - L2 LINE L2 -2094 1220 242 1120 222 14 0 chr1 8184106 8184327 -274009337 + MER58A DNA MER1_type 1 224 0 10866 17 1 0 chr1 8185278 8187297 -274006367 + L1PA3 LINE L1 4131 6150 -5 842 191 16 31 chr1 8187507 8187701 -274005963 + MER20 DNA MER1_type 29 219 0 2132 111 0 7 chr1 8187850 8188158 -274005506 - AluSx SINE Alu 0 306 1 555 311 34 0 chr1 8189472 8189649 -274004015 + MIR SINE MIR 2 184 -78 307 153 141 59 chr1 8189752 8189837 -274003827 + MIR SINE MIR 171 262 0 743 352 70 26 chr1 8190151 8190878 -274002786 - L2 LINE L2 -38 3234 2475 1302 206 4 8 chr1 8190878 8191130 -274002534 + AluJo SINE Alu 49 299 -13 1029 98 23 0 chr1 8191413 8191546 -274002118 + AluSq/x SINE Alu 1 136 -177 2237 121 3 0 chr1 8191546 8191852 -274001812 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 8192331 8192359 -274001305 + AT_rich Low_complexity Low_complexity 1 28 0 1178 178 5 10 chr1 8192469 8192677 -274000987 - AluJb SINE Alu -103 209 3 2240 93 3 22 chr1 8192918 8193229 -274000435 + AluSg SINE Alu 1 305 -5 607 274 11 22 chr1 8193262 8193441 -274000223 - MIR SINE MIR -1 261 85 2029 127 3 7 chr1 8193524 8193824 -273999840 + AluY SINE Alu 3 301 -10 1950 165 0 0 chr1 8193831 8194140 -273999524 + AluSx SINE Alu 1 309 -3 23 101 0 0 chr1 8195146 8195225 -273998439 + AT_rich Low_complexity Low_complexity 1 79 0 189 74 0 0 chr1 8198387 8198414 -273995250 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 8198872 8198902 -273994762 + AT_rich Low_complexity Low_complexity 1 30 0 2151 100 10 3 chr1 8199680 8199970 -273993694 + AluSq SINE Alu 9 300 -13 1438 189 111 4 chr1 8200785 8201055 -273992609 - AluJo SINE Alu -13 299 1 1774 173 3 10 chr1 8202017 8202318 -273991346 + AluJb SINE Alu 1 299 -13 1328 169 3 124 chr1 8202472 8202663 -273991001 - AluSp SINE Alu -1 312 182 2303 113 0 0 chr1 8202663 8202963 -273990701 - AluSx SINE Alu -12 300 1 1328 169 3 124 chr1 8202963 8203126 -273990538 - AluSp SINE Alu -131 182 1 1425 220 20 7 chr1 8203163 8203458 -273990206 + AluJo SINE Alu 1 299 -13 1038 90 23 0 chr1 8203742 8203875 -273989789 + AluSq/x SINE Alu 1 136 -176 2237 121 3 0 chr1 8203875 8204181 -273989483 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 8204660 8204688 -273988976 + AT_rich Low_complexity Low_complexity 1 28 0 1178 178 5 10 chr1 8204798 8205006 -273988658 - AluJb SINE Alu -103 209 3 2240 93 3 22 chr1 8205247 8205558 -273988106 + AluSg SINE Alu 1 305 -5 607 274 11 22 chr1 8205591 8205770 -273987894 - MIR SINE MIR -1 261 85 2029 127 3 7 chr1 8205853 8206153 -273987511 + AluY SINE Alu 3 301 -10 1950 165 0 0 chr1 8206160 8206469 -273987195 + AluSx SINE Alu 1 309 -3 23 101 0 0 chr1 8207475 8207554 -273986110 + AT_rich Low_complexity Low_complexity 1 79 0 189 74 0 0 chr1 8210716 8210743 -273982921 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 8211201 8211231 -273982433 + AT_rich Low_complexity Low_complexity 1 30 0 2151 100 10 3 chr1 8212009 8212299 -273981365 + AluSq SINE Alu 9 300 -13 232 244 35 58 chr1 8213014 8213100 -273980564 - L2 LINE L2 -1 3312 3229 428 294 65 30 chr1 8213157 8213358 -273980306 - MIR SINE MIR -39 223 16 211 354 46 39 chr1 8214827 8214957 -273978707 + L2 LINE L2 3133 3263 -9 349 240 10 20 chr1 8216051 8216151 -273977513 + MER94 DNA DNA 2 100 -34 21 36 0 0 chr1 8217235 8217263 -273976401 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 8217425 8217450 -273976214 + (A)n Simple_repeat Simple_repeat 1 25 0 1974 130 0 14 chr1 8218108 8218392 -273975272 + AluSx SINE Alu 6 285 -27 185 261 138 0 chr1 8219595 8219660 -273974004 - MIR SINE MIR -112 150 77 216 0 0 0 chr1 8220079 8220103 -273973561 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 526 155 0 0 chr1 8220113 8220197 -273973467 - AluJ/FLAM SINE Alu -228 84 1 759 171 0 0 chr1 8220421 8220544 -273973120 - FLAM_C SINE Alu -20 123 1 3188 82 52 7 chr1 8221357 8221822 -273971842 + LTR19A LTR ERV1 1 486 0 26 0 0 0 chr1 8222280 8222306 -273971358 + AT_rich Low_complexity Low_complexity 1 26 0 1694 101 36 8 chr1 8222306 8222553 -273971111 + AluSx SINE Alu 44 297 -15 709 183 0 51 chr1 8225545 8225664 -273968000 + FRAM SINE Alu 33 146 -166 288 77 0 0 chr1 8225664 8225703 -273967961 + (CATA)n Simple_repeat Simple_repeat 1 39 0 709 183 0 51 chr1 8225703 8225720 -273967944 + FRAM SINE Alu 146 162 -14 819 195 6 30 chr1 8226193 8226357 -273967307 + FRAM SINE Alu 1 160 -16 1607 183 11 21 chr1 8228077 8228362 -273965302 + AluJo SINE Alu 1 282 -30 300 137 0 0 chr1 8228366 8228417 -273965247 + (CA)n Simple_repeat Simple_repeat 2 52 0 1740 173 7 7 chr1 8228584 8228890 -273964774 + AluJb SINE Alu 1 306 -6 2381 76 0 0 chr1 8229685 8229974 -273963690 - AluY SINE Alu -22 289 1 317 299 110 16 chr1 8230732 8230859 -273962805 - L2 LINE L2 -7 3265 3127 2149 96 7 0 chr1 8230877 8231226 -273962438 - AluSp SINE Alu 0 351 1 726 223 60 107 chr1 8231271 8231326 -273962338 + MLT1J LTR MaLR 6 62 -449 979 173 13 0 chr1 8231326 8231513 -273962151 + FRAM SINE Alu 1 53 0 726 223 60 107 chr1 8231513 8231754 -273961910 + MLT1J LTR MaLR 62 291 -220 27 0 0 0 chr1 8231890 8231917 -273961747 + AT_rich Low_complexity Low_complexity 1 27 0 1278 195 130 38 chr1 8232984 8233441 -273960223 - Charlie4a DNA MER1_type -15 493 3 2229 73 59 0 chr1 8233722 8234011 -273959653 - AluY SINE Alu -5 306 1 960 188 0 12 chr1 8234944 8235114 -273958550 + AluJb SINE Alu 136 303 -9 29 0 0 0 chr1 8237002 8237031 -273956633 + AT_rich Low_complexity Low_complexity 1 29 0 431 214 111 0 chr1 8237130 8237247 -273956417 - MIR SINE MIR -22 240 111 262 295 115 0 chr1 8237904 8237982 -273955682 - L2 LINE L2 -25 3288 3202 325 264 97 21 chr1 8238015 8238159 -273955505 - L2 LINE L2 -2308 1006 852 663 188 0 0 chr1 8239630 8239731 -273953933 - FLAM_A SINE Alu -41 101 1 267 265 167 61 chr1 8239944 8240076 -273953588 + MIR SINE MIR 63 208 -54 463 262 154 35 chr1 8240448 8240612 -273953052 - MER5A DNA MER1_type -1 188 2 1355 192 77 133 chr1 8241093 8241185 -273952479 + MLT1C LTR MaLR 1 97 -370 1575 195 6 31 chr1 8241185 8241503 -273952161 + AluJo SINE Alu 1 310 -2 1355 192 77 133 chr1 8241503 8241775 -273951889 + MLT1C LTR MaLR 97 332 -135 1317 162 178 0 chr1 8241775 8242028 -273951636 + AluJo SINE Alu 1 298 -14 1355 192 77 133 chr1 8242028 8242157 -273951507 + MLT1C LTR MaLR 332 467 0 348 24 0 0 chr1 8242574 8242615 -273951049 + (TG)n Simple_repeat Simple_repeat 2 42 0 865 207 177 10 chr1 8242904 8243171 -273950493 - L1ME3A LINE L1 -9 6161 5852 1811 167 0 0 chr1 8243181 8243468 -273950196 - AluJb SINE Alu -25 287 1 2358 90 0 0 chr1 8244384 8244683 -273948981 + AluSx SINE Alu 1 299 -13 182 200 33 17 chr1 8244947 8245007 -273948657 - L2 LINE L2 -342 2972 2912 1931 103 3 125 chr1 8245421 8245553 -273948111 + AluSx SINE Alu 5 75 -227 2381 82 0 0 chr1 8245553 8245847 -273947817 + AluSc SINE Alu 1 294 -15 1931 103 3 125 chr1 8245847 8246043 -273947621 + AluSx SINE Alu 75 293 -9 1547 201 15 0 chr1 8246068 8246341 -273947323 + AluJo SINE Alu 1 277 -35 897 194 25 0 chr1 8246517 8246677 -273946987 + AluJb SINE Alu 138 301 -11 875 225 25 0 chr1 8246756 8246916 -273946748 - FRAM SINE Alu -2 164 1 2305 152 24 8 chr1 8247405 8247774 -273945890 - THE1C LTR MaLR 0 375 1 578 218 0 0 chr1 8247832 8247933 -273945731 - FAM SINE Alu -83 102 2 261 235 147 20 chr1 8248042 8248144 -273945520 + MER103 DNA DNA 45 159 -7 2384 55 41 0 chr1 8248362 8248653 -273945011 + AluY SINE Alu 1 303 -8 1416 169 32 18 chr1 8248994 8249272 -273944392 - AluJo SINE Alu -30 282 1 1929 128 7 17 chr1 8249562 8249850 -273943814 - AluJb SINE Alu -4 308 24 2257 105 3 0 chr1 8250147 8250442 -273943222 - AluSx SINE Alu -16 296 1 192 226 0 0 chr1 8251163 8251225 -273942439 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 733 197 0 8 chr1 8251767 8251899 -273941765 + FLAM_C SINE Alu 1 131 -2 2338 92 0 16 chr1 8251957 8252273 -273941391 + AluY SINE Alu 1 311 0 2059 127 20 0 chr1 8252501 8252793 -273940871 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr1 8253071 8253097 -273940567 + AT_rich Low_complexity Low_complexity 1 26 0 264 308 132 0 chr1 8253134 8253225 -273940439 - L2 LINE L2 -2 3270 3168 2326 101 3 0 chr1 8253410 8253718 -273939946 + AluY SINE Alu 1 309 -2 2171 122 0 0 chr1 8254209 8254513 -273939151 + AluSx SINE Alu 1 304 -8 30 83 0 0 chr1 8254980 8255052 -273938612 + AT_rich Low_complexity Low_complexity 1 72 0 208 255 174 67 chr1 8255375 8255524 -273938140 - MIR SINE MIR -70 192 28 1002 254 195 45 chr1 8255827 8256816 -273936848 - L2 LINE L2 -4 3309 2169 1487 181 0 77 chr1 8257327 8257653 -273936011 + AluJo SINE Alu 1 301 -11 504 270 44 53 chr1 8257704 8257930 -273935734 + MIR SINE MIR 28 251 -11 237 298 16 99 chr1 8258424 8258545 -273935119 + L2 LINE L2 2579 2689 -625 326 143 14 29 chr1 8258575 8258645 -273935019 - L1MB8 LINE L1 0 6178 6110 214 258 147 85 chr1 8258693 8259046 -273934618 + L2 LINE L2 2819 3193 -79 329 310 148 35 chr1 8259111 8259482 -273934182 + L2 LINE L2 1939 2351 -963 791 136 0 9 chr1 8259497 8259607 -273934057 - AluJo SINE Alu -155 157 49 709 353 70 26 chr1 8259607 8260334 -273933330 + L2 LINE L2 2475 3234 -38 303 153 141 59 chr1 8260648 8260733 -273932931 - MIR SINE MIR 0 262 171 550 311 34 0 chr1 8260836 8261013 -273932651 - MIR SINE MIR -78 184 2 2134 111 0 7 chr1 8262327 8262635 -273931029 + AluSx SINE Alu 1 306 0 1171 190 14 23 chr1 8262784 8263005 -273930659 - MER20 DNA MER1_type 0 219 1 1702 190 36 12 chr1 8263481 8263858 -273929806 + L1MB8 LINE L1 5728 6115 -63 356 0 23 0 chr1 8263859 8263903 -273929761 + (TG)n Simple_repeat Simple_repeat 2 46 0 482 110 30 70 chr1 8263929 8263959 -273929705 + L1MB7 LINE L1 6089 6119 -65 482 0 17 0 chr1 8263959 8264017 -273929647 + (TG)n Simple_repeat Simple_repeat 2 60 0 1672 130 3 98 chr1 8264017 8264333 -273929331 - AluJb SINE Alu -26 286 1 482 110 30 70 chr1 8264333 8264401 -273929263 + L1MB7 LINE L1 6117 6184 0 996 233 324 29 chr1 8265289 8266116 -273927548 - L2 LINE L2 -3 3310 2183 725 147 0 66 chr1 8266922 8267058 -273926606 + FLAM_C SINE Alu 1 127 -16 1572 200 3 3 chr1 8267108 8267408 -273926256 - AluJo SINE Alu -12 300 1 2202 92 11 0 chr1 8268025 8268330 -273925334 - AluSq SINE Alu 0 308 1 1557 168 51 7 chr1 8268701 8268975 -273924689 + AluJb SINE Alu 6 291 -21 27 49 0 0 chr1 8268982 8269023 -273924641 + AT_rich Low_complexity Low_complexity 1 41 0 850 172 0 8 chr1 8270310 8270444 -273923220 + AluJ SINE Alu 1 133 -169 470 113 0 0 chr1 8270445 8270507 -273923157 + AluJ SINE Alu 120 181 -131 1142 123 0 0 chr1 8270507 8270661 -273923003 + AluSq SINE Alu 133 286 -27 528 16 0 0 chr1 8270661 8270722 -273922942 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1414 167 31 0 chr1 8270722 8270949 -273922715 - MER46A DNA MER2_type -2 234 1 2342 95 13 0 chr1 8272082 8272388 -273921276 + AluSx SINE Alu 1 310 -2 494 284 44 38 chr1 8272592 8272775 -273920889 + MIR SINE MIR 65 248 -14 1807 86 11 156 chr1 8273298 8273657 -273920007 + AluSc SINE Alu 1 307 -2 987 176 40 10 chr1 8273852 8274051 -273919613 - MER3 DNA MER1_type -4 205 1 222 37 0 0 chr1 8277966 8277993 -273915671 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 8278574 8278595 -273915069 + AT_rich Low_complexity Low_complexity 1 21 0 1934 138 3 0 chr1 8278595 8278878 -273914786 + AluSq SINE Alu 1 284 -29 198 0 0 0 chr1 8278878 8278900 -273914764 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 311 64 0 21 chr1 8279763 8279810 -273913854 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1802 174 3 0 chr1 8279810 8280092 -273913572 - AluJo SINE Alu -29 283 1 1296 63 0 84 chr1 8280374 8280564 -273913100 + AluY SINE Alu 1 174 -137 1067 269 161 81 chr1 8280762 8280915 -273912749 - L2 LINE L2 -934 2380 2241 1929 169 0 7 chr1 8280915 8281217 -273912447 - AluJb SINE Alu -12 300 1 1067 269 161 81 chr1 8281217 8281402 -273912262 - L2 LINE L2 -1073 2241 2072 2326 101 0 0 chr1 8281402 8281699 -273911965 + AluSq SINE Alu 1 297 -16 1067 269 161 81 chr1 8281699 8282424 -273911240 - L2 LINE L2 -1242 2072 1230 601 226 0 8 chr1 8282961 8283094 -273910570 + MER47A DNA MER2_type 1 132 -234 1051 188 99 14 chr1 8283094 8283218 -273910446 + AluJo SINE Alu 5 117 -195 1931 126 23 26 chr1 8283218 8283528 -273910136 + AluSx SINE Alu 1 309 -3 1051 188 99 14 chr1 8283528 8283626 -273910038 + AluJo SINE Alu 117 246 -66 236 255 0 0 chr1 8283633 8283680 -273909984 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 1235 144 14 0 chr1 8283686 8283901 -273909763 + MER47A DNA MER2_type 148 365 -1 333 171 0 45 chr1 8283901 8283989 -273909675 + L1MB8 LINE L1 6094 6177 -1 1524 195 8 57 chr1 8285006 8285391 -273908273 - MLT1A2 LTR MaLR -8 366 1 2270 85 0 0 chr1 8285813 8286130 -273907534 - AluSc SINE Alu 0 317 1 821 140 54 59 chr1 8287157 8287279 -273906385 + MER2 DNA MER2_type 1 123 -222 2065 138 3 7 chr1 8287279 8287584 -273906080 - AluSx SINE Alu -8 304 1 821 140 54 59 chr1 8287584 8287647 -273906017 + MER2 DNA MER2_type 123 185 -160 4471 161 29 9 chr1 8287996 8288862 -273904802 + L1MC2 LINE L1 5461 6343 -1 4493 206 44 16 chr1 8289024 8289414 -273904250 + L1P4 LINE L1 4099 4477 -1691 2142 136 0 0 chr1 8289414 8289708 -273903956 + AluSg SINE Alu 1 294 -16 4493 206 44 16 chr1 8289708 8290403 -273903261 + L1P4 LINE L1 4477 5245 -923 1873 141 3 36 chr1 8290403 8290707 -273902957 + AluSx SINE Alu 1 294 -18 4493 206 44 16 chr1 8290707 8291264 -273902400 + L1P4 LINE L1 5245 5785 -383 1786 166 7 3 chr1 8291264 8291554 -273902110 + AluSx SINE Alu 1 291 -21 2202 114 0 3 chr1 8291561 8291867 -273901797 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr1 8292260 8292288 -273901376 + AT_rich Low_complexity Low_complexity 1 28 0 2212 82 14 0 chr1 8292331 8292622 -273901042 - AluY SINE Alu -16 295 1 417 91 15 0 chr1 8292951 8293017 -273900647 - MER41B LTR ERV1 -88 547 481 22 56 0 0 chr1 8293017 8293053 -273900611 + AT_rich Low_complexity Low_complexity 1 36 0 730 146 0 83 chr1 8293608 8293752 -273899912 - FLAM_C SINE Alu -1 132 1 461 133 0 36 chr1 8293847 8293930 -273899734 - AluJ/FRAM SINE Alu -9 303 224 469 246 105 9 chr1 8293980 8294094 -273899570 + L2 LINE L2 3167 3291 -22 443 274 137 21 chr1 8294062 8294296 -273899368 - MIR SINE MIR 0 262 2 * 2298 106 0 0 chr1 8294961 8295263 -273898401 + AluSg SINE Alu 3 304 -6 375 23 0 0 chr1 8296222 8296266 -273897398 + (CA)n Simple_repeat Simple_repeat 2 45 0 231 335 66 36 chr1 8299134 8299301 -273894363 - MIR SINE MIR -54 208 37 292 320 0 0 chr1 8300108 8300183 -273893481 + L2 LINE L2 3004 3078 -194 2409 81 10 0 chr1 8300489 8300796 -273892868 + AluY SINE Alu 1 310 -1 698 176 50 0 chr1 8300827 8300946 -273892718 + FLAM_A SINE Alu 1 125 -8 1371 181 115 0 chr1 8302466 8302770 -273890894 + MER44D DNA MER2_type 1 609 0 1871 105 83 78 chr1 8302790 8302954 -273890710 + THE1B LTR MaLR 2 164 -200 1907 135 6 52 chr1 8302954 8303280 -273890384 - AluSx SINE Alu -1 311 1 1871 105 83 78 chr1 8303280 8303476 -273890188 + THE1B LTR MaLR 164 364 0 2505 61 0 26 chr1 8303560 8303873 -273889791 - AluY SINE Alu -5 306 2 818 128 14 43 chr1 8303931 8304072 -273889592 - FLAM_C SINE Alu -6 137 1 248 296 82 22 chr1 8304316 8304451 -273889213 - L1MC/D LINE L1 -1984 5824 5682 2324 80 10 0 chr1 8305169 8305469 -273888195 - AluY SINE Alu -8 303 1 2176 110 0 0 chr1 8305551 8305841 -273887823 + AluSx SINE Alu 23 312 0 23 54 0 0 chr1 8307429 8307466 -273886198 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr1 8307935 8307971 -273885693 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 8308078 8308102 -273885562 + AT_rich Low_complexity Low_complexity 1 24 0 2216 111 0 0 chr1 8308106 8308425 -273885239 + AluSq SINE Alu 1 319 0 23 0 0 0 chr1 8308803 8308826 -273884838 + AT_rich Low_complexity Low_complexity 1 23 0 943 213 163 80 chr1 8309039 8309536 -273884128 + HAL1 LINE L1 1520 1974 -533 2206 107 0 0 chr1 8309536 8309826 -273883838 - AluSc SINE Alu -19 290 1 943 213 163 80 chr1 8309826 8309884 -273883780 + HAL1 LINE L1 1974 2026 -481 2296 74 3 0 chr1 8309884 8310168 -273883496 + AluSq SINE Alu 1 285 -28 943 213 163 80 chr1 8310168 8310249 -273883415 + HAL1 LINE L1 2026 2210 -297 1769 186 4 0 chr1 8310281 8310556 -273883108 + AluJb SINE Alu 6 281 -31 874 230 11 0 chr1 8310636 8310827 -273882837 + AluJb SINE Alu 118 310 -2 1660 176 22 45 chr1 8310835 8311148 -273882516 + AluJb SINE Alu 1 306 -6 262 294 39 0 chr1 8311149 8311251 -273882413 + HAL1 LINE L1 2319 2424 -83 696 279 104 5 chr1 8313345 8313567 -273880097 + MIR SINE MIR 7 250 -12 375 231 74 91 chr1 8314628 8314673 -273878991 - L2 LINE L2 0 3313 3269 1886 83 8 38 chr1 8314673 8314938 -273878726 + AluSc SINE Alu 37 293 -16 375 231 74 91 chr1 8314938 8315134 -273878530 - L2 LINE L2 -44 3269 3076 260 179 13 0 chr1 8315146 8315224 -273878440 + GA-rich Low_complexity Low_complexity 1 79 0 2145 117 7 0 chr1 8315428 8315718 -273877946 + AluSx SINE Alu 1 292 -20 2027 142 0 7 chr1 8315965 8316267 -273877397 - AluSx SINE Alu -11 301 2 414 209 35 52 chr1 8316560 8316675 -273876989 + Tigger1 DNA MER2_type 4 116 -2302 * 1022 92 32 38 chr1 8316667 8316852 -273876812 + LTR54 LTR ERV1 327 510 0 200 364 35 28 chr1 8316873 8317016 -273876648 + L2 LINE L2 2631 2774 -540 528 276 105 20 chr1 8317026 8317178 -273876486 - MIR SINE MIR -7 255 91 1691 155 6 75 chr1 8317195 8317556 -273876108 - MER2 DNA MER2_type -8 337 2 2091 92 56 0 chr1 8319219 8319503 -273874161 + AluSg SINE Alu 1 300 -10 2295 99 3 0 chr1 8319938 8320232 -273873432 + AluSq SINE Alu 1 295 -18 21 57 0 0 chr1 8320236 8320271 -273873393 + AT_rich Low_complexity Low_complexity 1 35 0 2430 81 10 10 chr1 8320797 8321107 -273872557 - AluSg SINE Alu 0 310 1 2051 134 3 0 chr1 8321460 8321759 -273871905 - AluSx SINE Alu -12 300 1 2072 105 4 0 chr1 8321820 8322096 -273871568 - AluSx SINE Alu -35 277 1 2286 97 3 0 chr1 8322138 8322446 -273871218 - AluSc SINE Alu 0 309 1 2014 88 11 18 chr1 8323539 8323812 -273869852 + AluSp SINE Alu 1 271 -42 2285 93 0 3 chr1 8324118 8324408 -273869256 - AluSg SINE Alu -21 289 1 604 186 7 57 chr1 8324408 8324548 -273869116 + MER58B DNA MER1_type 204 336 -5 242 264 97 0 chr1 8325139 8325211 -273868453 + MIR SINE MIR 38 116 -92 2368 101 0 0 chr1 8325220 8325528 -273868136 - AluSx SINE Alu -4 308 1 657 216 157 33 chr1 8325531 8325684 -273867980 - AluSg/x SINE Alu -19 293 122 341 219 0 14 chr1 8325714 8325787 -273867877 - MER5A DNA MER1_type -1 188 117 2692 235 50 44 chr1 8325799 8326660 -273867004 + L1MCb LINE L1 13 878 -5167 264 30 0 0 chr1 8326660 8326693 -273866971 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2257 92 3 3 chr1 8326695 8326988 -273866676 - AluY SINE Alu -18 293 1 2938 162 95 67 chr1 8326992 8327626 -273866038 + L1MC2 LINE L1 5595 6210 -134 195 100 0 0 chr1 8327626 8327656 -273866008 + (TG)n Simple_repeat Simple_repeat 1 30 0 2938 162 95 67 chr1 8327656 8327691 -273865973 + L1MC2 LINE L1 6210 6243 -101 2701 38 0 13 chr1 8327691 8328006 -273865658 - AluY SINE Alu 0 311 1 2938 162 95 67 chr1 8328006 8328052 -273865612 + L1MC2 LINE L1 6243 6331 -13 475 262 74 0 chr1 8328078 8328200 -273865464 - MER5A DNA MER1_type -58 131 1 1539 187 257 22 chr1 8328261 8328699 -273864965 + MLT1F LTR MaLR 1 502 -3 1878 93 43 25 chr1 8328714 8329019 -273864645 + AluSq SINE Alu 1 310 0 555 258 74 0 chr1 8329446 8329609 -273864055 + MIR SINE MIR 87 261 -1 188 337 171 21 chr1 8329611 8329804 -273863860 + L2 LINE L2 2838 3059 -213 23 0 0 0 chr1 8329842 8329865 -273863799 + AT_rich Low_complexity Low_complexity 1 23 0 271 270 0 60 chr1 8329893 8329993 -273863671 - MIR SINE MIR 0 262 169 22 0 0 0 chr1 8330185 8330207 -273863457 + AT_rich Low_complexity Low_complexity 1 22 0 513 265 129 34 chr1 8330239 8330463 -273863201 - L1MC4a LINE L1 -1791 6017 5757 2309 122 135 3 chr1 8330463 8330841 -273862823 + MSTA LTR MaLR 1 428 0 513 265 129 34 chr1 8330841 8330910 -273862754 - L1MC4a LINE L1 -2051 5757 5696 2344 70 0 3 chr1 8331074 8331392 -273862272 - AluY SINE Alu 0 317 1 207 0 0 0 chr1 8331738 8331761 -273861903 + (A)n Simple_repeat Simple_repeat 1 23 0 901 118 0 59 chr1 8332469 8332621 -273861043 - FLAM_C SINE Alu 0 143 1 830 120 0 0 chr1 8333156 8333281 -273860383 - AluSg/x SINE Alu 0 312 188 669 124 0 0 chr1 8333281 8333370 -273860294 - AluJ/FLAM SINE Alu -222 90 2 183 304 51 13 chr1 8333443 8333522 -273860142 + L2 LINE L2 3169 3250 -22 382 200 35 12 chr1 8333526 8333611 -273860053 - MIR SINE MIR -12 250 164 615 278 124 51 chr1 8333923 8334351 -273859313 - LTR41 LTR ERVL -6 767 309 980 166 29 6 chr1 8334388 8334563 -273859101 - LTR41 LTR ERVL -594 179 1 250 280 220 0 chr1 8334576 8334694 -273858970 + L2 LINE L2 2427 2570 -744 45 19 0 0 chr1 8334726 8334778 -273858886 + AT_rich Low_complexity Low_complexity 1 52 0 221 234 8 153 chr1 8334821 8334945 -273858719 + L2 LINE L2 2916 3021 -251 5011 151 61 15 chr1 8335063 8336110 -273857554 - Tigger3b DNA MER2_type -57 1175 3 263 271 59 93 chr1 8336144 8336262 -273857402 + L2 LINE L2 3154 3267 -5 2215 135 10 56 chr1 8336268 8336661 -273857003 + THE1C LTR MaLR 1 375 0 1718 119 0 140 chr1 8337436 8337772 -273855892 + AluJb SINE Alu 13 301 -11 1030 176 0 12 chr1 8337999 8338169 -273855495 + AluJo SINE Alu 1 168 -144 1621 134 94 29 chr1 8338171 8338446 -273855218 - AluSx SINE Alu -19 293 1 783 255 98 57 chr1 8338570 8338938 -273854726 + L2 LINE L2 2930 3312 -1 2119 169 42 0 chr1 8339943 8340303 -273853361 + THE1C LTR MaLR 1 375 0 1657 189 17 0 chr1 8340673 8340969 -273852695 + AluJo SINE Alu 1 301 -11 276 340 0 10 chr1 8341255 8341358 -273852306 + MLT1K LTR MaLR 185 286 -302 988 157 45 0 chr1 8341361 8341539 -273852125 - MER47A DNA MER2_type -177 189 4 189 194 75 32 chr1 8341622 8341715 -273851949 - L2 LINE L2 -358 2914 2818 349 143 13 13 chr1 8341733 8341810 -273851854 + GA-rich Low_complexity Low_complexity 1 77 0 2356 59 35 0 chr1 8341898 8342186 -273851478 - AluY SINE Alu -13 298 1 2158 100 0 21 chr1 8342672 8342963 -273850701 - AluSx SINE Alu -27 285 1 430 331 24 24 chr1 8342999 8343168 -273850496 - MIR SINE MIR -58 204 36 647 224 22 92 chr1 8343857 8344085 -273849579 - MIR SINE MIR 0 262 51 487 311 104 65 chr1 8344156 8344755 -273848909 - L2 LINE L2 0 3313 2667 2008 152 3 0 chr1 8344755 8345058 -273848606 + AluSx SINE Alu 1 304 -8 487 311 104 65 chr1 8345058 8345112 -273848552 - L2 LINE L2 -646 2667 2617 221 231 115 0 chr1 8345114 8345166 -273848498 + L2 LINE L2 3256 3313 0 281 282 13 0 chr1 8346162 8346240 -273847424 - MIR SINE MIR -21 241 163 544 197 249 28 chr1 8346867 8347080 -273846584 - MIR SINE MIR 0 262 3 21 0 0 0 chr1 8347894 8347915 -273845749 + AT_rich Low_complexity Low_complexity 1 21 0 493 196 181 7 chr1 8350318 8350456 -273843208 - MER69A DNA AcHobo -15 162 1 946 134 15 0 chr1 8350668 8350802 -273842862 + AluJo SINE Alu 1 136 -176 807 191 7 15 chr1 8350899 8351035 -273842629 + AluJo SINE Alu 1 135 -177 2219 113 10 3 chr1 8351695 8351997 -273841667 + AluSq SINE Alu 1 304 -9 2454 132 58 127 chr1 8352699 8352977 -273840687 + L1MA8 LINE L1 5711 6007 -284 1993 114 14 3 chr1 8352977 8353266 -273840398 - AluSg SINE Alu -18 292 1 1560 135 36 32 chr1 8353273 8353525 -273840139 - AluJo SINE Alu -11 301 49 2454 132 58 127 chr1 8353525 8353859 -273839805 + L1MA8 LINE L1 6013 6288 -3 692 154 9 0 chr1 8353908 8354018 -273839646 + FLAM_A SINE Alu 28 138 -4 351 0 0 0 chr1 8354724 8354763 -273838901 + (CA)n Simple_repeat Simple_repeat 2 40 0 2454 73 0 3 chr1 8354911 8355212 -273838452 - AluSq SINE Alu -13 300 1 259 167 0 0 chr1 8355503 8355551 -273838113 - Alu SINE Alu -4 298 251 696 332 23 0 chr1 8355740 8355996 -273837668 - MIR SINE MIR 0 262 1 2333 99 0 13 chr1 8356521 8356833 -273836831 + AluSp SINE Alu 1 308 -5 279 296 34 126 chr1 8356976 8357270 -273836394 + L2 LINE L2 3005 3271 -1 2033 138 0 7 chr1 8358236 8358541 -273835123 + AluSx SINE Alu 1 303 -9 2349 81 0 7 chr1 8358544 8358841 -273834823 + AluSc SINE Alu 1 295 -14 215 294 141 0 chr1 8359454 8359539 -273834125 - L2 LINE L2 -207 3065 2969 3947 181 48 19 chr1 8359606 8360412 -273833252 + L1MB8 LINE L1 5349 6178 0 2070 131 10 13 chr1 8360422 8360558 -273833106 + AluSq SINE Alu 1 136 -177 2321 89 0 0 chr1 8360558 8360849 -273832815 + AluSc SINE Alu 2 292 -17 2070 131 10 13 chr1 8360849 8361026 -273832638 + AluSq SINE Alu 136 313 0 2066 135 3 22 chr1 8361144 8361462 -273832202 + AluSx SINE Alu 1 312 0 186 243 103 96 chr1 8362019 8362155 -273831509 - L2 LINE L2 -1842 1472 1336 1745 183 10 16 chr1 8362206 8362518 -273831146 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 8362562 8362585 -273831079 + AT_rich Low_complexity Low_complexity 1 23 0 2000 110 0 27 chr1 8362585 8362885 -273830779 + AluSx SINE Alu 21 312 0 1034 213 56 0 chr1 8363325 8363522 -273830142 + MER3 DNA MER1_type 2 209 0 782 211 60 22 chr1 8363830 8364015 -273829649 + MER58A DNA MER1_type 1 192 -32 1618 167 24 17 chr1 8364376 8364664 -273829000 - AluJo SINE Alu -22 290 1 2249 118 0 3 chr1 8364670 8364976 -273828688 - AluSx SINE Alu -7 305 1 28 0 0 0 chr1 8365187 8365215 -273828449 + AT_rich Low_complexity Low_complexity 1 28 0 271 275 296 16 chr1 8365352 8365541 -273828123 + MIR SINE MIR 12 253 -9 756 323 33 25 chr1 8365574 8365967 -273827697 + L1MC4a LINE L1 5548 5943 -1865 2125 111 10 7 chr1 8366128 8366425 -273827239 + AluSx SINE Alu 1 298 -14 2482 74 0 0 chr1 8366515 8366826 -273826838 + AluY SINE Alu 1 311 0 276 189 63 21 chr1 8366950 8367045 -273826619 + L1ME4a LINE L1 5916 6014 -107 211 222 0 0 chr1 8367046 8367082 -273826582 + L2 LINE L2 3199 3234 -79 2088 127 3 16 chr1 8367379 8367687 -273825977 + AluSx SINE Alu 1 304 -8 1923 157 13 3 chr1 8367693 8367993 -273825671 + AluSx SINE Alu 1 303 -9 799 176 23 0 chr1 8368299 8368430 -273825234 + AluJb SINE Alu 2 135 -177 2168 108 0 0 chr1 8368430 8368718 -273824946 + AluSg SINE Alu 1 288 -22 2414 72 3 3 chr1 8369234 8369540 -273824124 - AluSp SINE Alu -7 306 1 2615 65 7 0 chr1 8369838 8370145 -273823519 - AluSc SINE Alu 0 309 1 1583 192 0 38 chr1 8370176 8370489 -273823175 + AluJo SINE Alu 1 301 -11 914 266 5 5 chr1 8370674 8370881 -273822783 - MIR SINE MIR -54 208 2 1765 183 3 0 chr1 8371188 8371483 -273822181 - AluSx SINE Alu -16 296 1 1808 138 6 55 chr1 8371597 8371923 -273821741 - AluJb SINE Alu -2 310 1 2453 70 3 7 chr1 8372420 8372721 -273820943 - AluY SINE Alu -11 300 1 208 281 123 9 chr1 8372833 8372947 -273820717 + MIR SINE MIR 74 200 -62 1531 169 4 0 chr1 8373444 8373686 -273819978 + AluJb SINE Alu 4 246 -66 1353 139 15 0 chr1 8373739 8373940 -273819724 - AluSg/x SINE Alu -15 295 92 1219 246 91 9 chr1 8375449 8375846 -273817818 - MLT1K LTR MaLR -109 479 2 265 190 17 0 chr1 8375865 8375923 -273817741 + MIR SINE MIR 68 126 -82 1977 129 31 3 chr1 8376752 8377038 -273816626 + AluSx SINE Alu 1 294 -18 967 132 11 6 chr1 8377044 8377218 -273816446 + GA-rich Low_complexity Low_complexity 1 175 0 1133 211 62 62 chr1 8377493 8377559 -273816105 - MLT1C LTR MaLR -2 465 400 2175 122 0 3 chr1 8377559 8377870 -273815794 + AluSx SINE Alu 1 310 -2 1133 211 62 62 chr1 8377870 8378192 -273815472 - MLT1C LTR MaLR -66 401 77 2231 105 0 26 chr1 8378203 8378339 -273815325 + AluSx SINE Alu 1 139 -173 2150 105 7 16 chr1 8378339 8378643 -273815021 + AluSg SINE Alu 1 301 -9 2231 105 0 26 chr1 8378643 8378810 -273814854 + AluSx SINE Alu 139 296 -16 682 67 11 0 chr1 8378816 8378906 -273814758 + AluY SINE Alu 2 92 -219 1683 74 0 0 chr1 8378959 8379162 -273814502 + AluY SINE Alu 99 301 -10 1050 169 43 0 chr1 8379165 8379349 -273814315 - MLT1A1 LTR MaLR -4 361 170 1154 101 35 0 chr1 8379388 8379557 -273814107 - L1PA8 LINE L1 -3 6169 5995 829 114 8 38 chr1 8379557 8379688 -273813976 - FRAM SINE Alu -8 168 42 625 218 35 0 chr1 8379688 8379830 -273813834 - MLT1A1 LTR MaLR -218 147 1 1474 308 49 48 chr1 8379896 8380182 -273813482 - L2 LINE L2 -352 2962 2678 2220 102 7 3 chr1 8380182 8380476 -273813188 - AluSx SINE Alu -12 300 6 1474 308 49 48 chr1 8380476 8380842 -273812822 - L2 LINE L2 -636 2678 2306 2599 98 17 3 chr1 8380842 8381201 -273812463 - THE1B LTR MaLR 0 364 1 1474 308 49 48 chr1 8381201 8381423 -273812241 - L2 LINE L2 -1008 2306 2086 1757 120 71 0 chr1 8381469 8381736 -273811928 - AluSx SINE Alu -6 306 21 1628 163 0 80 chr1 8381741 8381928 -273811736 - AluJb SINE Alu -12 300 148 1906 135 10 10 chr1 8381928 8382216 -273811448 - AluSx SINE Alu -24 288 1 1628 163 0 80 chr1 8382216 8382354 -273811310 - AluJb SINE Alu -164 148 1 229 211 39 0 chr1 8382355 8382407 -273811257 - AluJo SINE Alu -167 135 82 2336 107 7 0 chr1 8384087 8384397 -273809267 - AluSx SINE Alu 0 312 1 2235 115 0 13 chr1 8385238 8385550 -273808114 + AluSq SINE Alu 1 308 -5 1632 149 7 53 chr1 8385573 8385719 -273807945 - AluJo SINE Alu -44 268 140 2315 97 7 0 chr1 8385719 8386017 -273807647 - AluSq SINE Alu -13 300 1 1632 149 7 53 chr1 8386017 8386151 -273807513 - AluJo SINE Alu -172 140 1 938 179 28 6 chr1 8386158 8386337 -273807327 + AluJb SINE Alu 112 294 -18 2024 93 11 7 chr1 8386340 8386619 -273807045 + AluSg SINE Alu 1 280 -30 1795 127 4 0 chr1 8386668 8386913 -273806751 + AluSx SINE Alu 1 246 -66 293 81 0 0 chr1 8387015 8387052 -273806612 - Alu SINE Alu -261 41 5 1147 45 0 8 chr1 8387157 8387290 -273806374 + AluSg SINE Alu 3 134 -176 2188 104 10 3 chr1 8387290 8387588 -273806076 + AluSx SINE Alu 1 300 -12 347 257 0 0 chr1 8387588 8387658 -273806006 + L2 LINE L2 3197 3266 -47 1186 139 17 6 chr1 8387821 8388001 -273805663 + AluSx SINE Alu 1 182 -130 300 297 27 18 chr1 8388031 8388142 -273805522 + MIR SINE MIR 27 138 -70 1670 156 31 59 chr1 8388849 8388985 -273804679 + AluJo SINE Alu 1 139 -173 2177 116 0 7 chr1 8388985 8389279 -273804385 + AluSc SINE Alu 1 292 -17 1670 156 31 59 chr1 8389279 8389462 -273804202 + AluJo SINE Alu 139 311 -1 551 286 82 11 chr1 8389464 8389646 -273804018 + MIR SINE MIR 57 251 -11 2170 245 75 51 chr1 8389921 8390533 -273803131 + L2 LINE L2 1732 2328 -986 2193 122 0 0 chr1 8390533 8390829 -273802835 + AluSx SINE Alu 1 296 -16 2170 245 75 51 chr1 8390829 8390961 -273802703 + L2 LINE L2 2328 2455 -859 1792 180 0 3 chr1 8390961 8391250 -273802414 + AluJb SINE Alu 1 288 -24 2170 245 75 51 chr1 8391250 8391462 -273802202 + L2 LINE L2 2455 2712 -602 512 174 51 0 chr1 8391465 8391563 -273802101 + AluJo SINE Alu 34 136 -176 340 152 76 13 chr1 8391584 8391663 -273802001 + L2 LINE L2 2702 2785 -529 1041 159 30 25 chr1 8391809 8392010 -273801654 + MLT1C LTR MaLR 266 467 0 998 272 72 59 chr1 8392010 8392466 -273801198 + L2 LINE L2 2848 3309 -4 2284 103 3 0 chr1 8393541 8393831 -273799833 - AluSq SINE Alu -22 291 1 213 298 46 23 chr1 8393896 8394027 -273799637 + L2 LINE L2 2537 2670 -644 798 276 95 21 chr1 8394866 8395277 -273798387 + L2 LINE L2 2664 3105 -208 2184 112 0 7 chr1 8395456 8395759 -273797905 + AluSx SINE Alu 1 301 -11 1572 118 0 0 chr1 8395808 8396019 -273797645 + AluJb SINE Alu 84 294 -18 24 53 0 0 chr1 8396199 8396237 -273797427 + AT_rich Low_complexity Low_complexity 1 38 0 2351 93 0 3 chr1 8396272 8396572 -273797092 - AluSg SINE Alu -11 299 1 885 126 0 15 chr1 8397072 8397207 -273796457 + AluJo SINE Alu 1 133 -169 38 0 0 0 chr1 8397207 8397245 -273796419 + AT_rich Low_complexity Low_complexity 1 38 0 1970 142 0 7 chr1 8398523 8398805 -273794859 - AluSq SINE Alu -33 280 1 293 326 68 30 chr1 8399280 8399412 -273794252 + L2 LINE L2 3133 3269 -3 968 169 34 11 chr1 8399859 8400037 -273793627 + AluJo SINE Alu 131 312 0 2497 87 0 0 chr1 8400794 8401105 -273792559 + AluSx SINE Alu 1 311 -1 1912 119 11 14 chr1 8401720 8401998 -273791666 + AluSx SINE Alu 19 295 -17 1864 56 158 11 chr1 8402035 8402301 -273791363 + AluY SINE Alu 1 305 -6 695 197 0 0 chr1 8402534 8402683 -273790981 + FLAM_C SINE Alu 1 149 0 253 220 17 34 chr1 8402685 8402744 -273790920 + FLAM_A SINE Alu 1 58 -75 997 201 0 16 chr1 8402766 8402950 -273790714 - AluJb SINE Alu -46 266 86 2182 94 7 0 chr1 8402966 8403243 -273790421 - AluSg SINE Alu -31 279 1 660 188 8 8 chr1 8403249 8403366 -273790298 - FLAM_A SINE Alu -10 132 16 2490 84 3 0 chr1 8403620 8403928 -273789736 + AluSp SINE Alu 1 309 -4 461 130 130 11 chr1 8404493 8404585 -273789079 - HY1 scRNA scRNA -2 110 8 1102 197 60 77 chr1 8405011 8405310 -273788354 + AluSx SINE Alu 2 295 -7 926 154 0 0 chr1 8405896 8406032 -273787632 + AluJo SINE Alu 1 136 -176 2135 111 0 19 chr1 8406032 8406348 -273787316 + AluSx SINE Alu 1 310 -2 2423 93 0 0 chr1 8406609 8406911 -273786753 - AluSx SINE Alu -10 302 1 2230 109 10 0 chr1 8406911 8407213 -273786451 - AluSq SINE Alu -8 305 1 32 0 0 0 chr1 8407440 8407472 -273786192 + AT_rich Low_complexity Low_complexity 1 32 0 1000 140 0 67 chr1 8407473 8407577 -273786087 + FRAM SINE Alu 1 83 -229 1455 58 85 58 chr1 8407577 8407715 -273785949 - MER30 DNA MER1_type 0 230 82 2297 104 0 19 chr1 8407715 8408033 -273785631 - AluSx SINE Alu 0 312 1 1455 58 85 58 chr1 8408033 8408118 -273785546 - MER30 DNA MER1_type -148 82 1 1000 140 0 67 chr1 8408118 8408192 -273785472 + FRAM SINE Alu 83 160 -16 270 173 49 25 chr1 8408207 8408288 -273785376 + L1MB7 LINE L1 6100 6182 -2 293 213 0 0 chr1 8408390 8408451 -273785213 + L1MC/D LINE L1 5376 5436 -2372 780 145 123 7 chr1 8408456 8408594 -273785070 + FRAM SINE Alu 1 154 -12 2110 118 7 0 chr1 8408603 8408890 -273784774 + AluSx SINE Alu 1 289 -23 2004 148 0 3 chr1 8408896 8409187 -273784477 + AluJb SINE Alu 1 290 -22 2372 94 3 0 chr1 8409190 8409487 -273784177 - AluSp SINE Alu -15 298 1 415 299 159 9 chr1 8409526 8409847 -273783817 + L1MC/D LINE L1 5443 5811 -1997 27 0 0 0 chr1 8409994 8410021 -273783643 + AT_rich Low_complexity Low_complexity 1 27 0 210 324 29 7 chr1 8410375 8410514 -273783150 + L2 LINE L2 2918 3059 -213 29 28 0 0 chr1 8410968 8411004 -273782660 + AT_rich Low_complexity Low_complexity 1 36 0 2191 97 27 10 chr1 8411113 8411411 -273782253 + AluSc SINE Alu 1 303 -6 1588 163 80 7 chr1 8411504 8411780 -273781884 - AluJb SINE Alu -16 296 1 1483 278 84 8 chr1 8412370 8412845 -273780819 + MLT1J LTR MaLR 1 511 0 1156 115 35 11 chr1 8412915 8413089 -273780575 - AluSg/x SINE Alu 0 310 133 1907 162 0 14 chr1 8413149 8413285 -273780379 + AluSq SINE Alu 1 137 -176 2089 135 3 3 chr1 8413285 8413596 -273780068 + AluSq SINE Alu 1 311 -2 1907 162 0 14 chr1 8413596 8413755 -273779909 + AluSq SINE Alu 137 292 -21 2352 110 3 0 chr1 8413760 8414069 -273779595 - AluSq SINE Alu -3 310 1 1741 124 51 7 chr1 8414165 8414459 -273779205 + AluSx SINE Alu 1 306 0 190 267 188 30 chr1 8414539 8414640 -273779024 - L2 LINE L2 0 3313 3197 1846 162 0 7 chr1 8414973 8415270 -273778394 - AluJo SINE Alu -17 295 1 975 168 0 23 chr1 8415914 8416087 -273777577 + AluJb SINE Alu 137 305 -7 864 209 37 37 chr1 8416361 8416576 -273777088 - MIR SINE MIR 0 262 48 2498 85 0 3 chr1 8416772 8417077 -273776587 + AluY SINE Alu 1 304 -7 432 229 100 53 chr1 8417459 8417629 -273776035 + MER104 DNA MER2_type 1 178 -2 2047 105 22 0 chr1 8417895 8418222 -273775442 - AluSx SINE Alu 0 333 1 42 0 0 19 chr1 8418227 8418248 -273775416 + AT_rich Low_complexity Low_complexity 1 21 -31 1896 167 0 3 chr1 8418248 8418535 -273775129 + AluJb SINE Alu 3 288 -24 42 0 0 19 chr1 8418535 8418566 -273775098 + AT_rich Low_complexity Low_complexity 21 52 0 200 200 25 0 chr1 8418813 8418853 -273774811 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 1818 158 17 20 chr1 8419245 8419537 -273774127 + AluJo SINE Alu 1 291 -21 2168 123 4 0 chr1 8420286 8420587 -273773077 + AluSx SINE Alu 2 288 -24 2248 114 3 3 chr1 8421527 8421835 -273771829 - AluSx SINE Alu -4 308 1 327 85 0 0 chr1 8423750 8423797 -273769867 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 92 0 0 chr1 8425150 8425215 -273768449 + GC_rich Low_complexity Low_complexity 1 65 0 273 57 0 0 chr1 8425734 8425769 -273767895 + (T)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr1 8425955 8425999 -273767665 + GC_rich Low_complexity Low_complexity 1 44 0 2549 60 3 0 chr1 8426813 8427111 -273766553 - AluSp SINE Alu -14 299 1 1772 119 0 0 chr1 8427466 8427701 -273765963 - AluSg/x SINE Alu 0 310 76 361 268 111 39 chr1 8428076 8428162 -273765502 - MIR SINE MIR -13 249 171 2465 84 10 0 chr1 8428162 8428472 -273765192 - AluSp SINE Alu 0 313 1 361 268 111 39 chr1 8428472 8428538 -273765126 - MIR SINE MIR -91 171 86 24 32 0 0 chr1 8428900 8428931 -273764733 + AT_rich Low_complexity Low_complexity 1 31 0 1435 166 4 17 chr1 8428932 8429167 -273764497 + AluJb SINE Alu 67 298 -14 381 332 65 18 chr1 8429184 8429401 -273764263 - L1M4 LINE L1 -905 5241 5015 23 33 0 0 chr1 8429522 8429552 -273764112 + AT_rich Low_complexity Low_complexity 1 30 0 2312 99 3 0 chr1 8430197 8430491 -273763173 + AluSq SINE Alu 1 295 -18 261 57 0 0 chr1 8431310 8431345 -273762319 + (A)n Simple_repeat Simple_repeat 1 35 0 2318 93 3 3 chr1 8431527 8431828 -273761836 + AluSx SINE Alu 1 301 -11 714 138 32 0 chr1 8431877 8432000 -273761664 + L1MC2 LINE L1 5727 5853 -480 803 154 0 0 chr1 8432001 8432124 -273761540 + AluJ SINE Alu 2 124 -188 25 0 0 0 chr1 8432135 8432160 -273761504 + AT_rich Low_complexity Low_complexity 1 25 0 1272 146 21 90 chr1 8432160 8432448 -273761216 + L1MC2 LINE L1 5839 6106 -238 1062 119 6 36 chr1 8432448 8432616 -273761048 + AluJ SINE Alu 132 294 -18 2095 118 17 3 chr1 8432616 8432903 -273760761 + AluSx SINE Alu 1 291 -21 2499 68 0 7 chr1 8432905 8433215 -273760449 + AluSg1 SINE Alu 1 308 -1 950 177 48 0 chr1 8433215 8433401 -273760263 + L1MC2 LINE L1 6137 6331 -13 2130 78 7 68 chr1 8433401 8433708 -273759956 + AluSq SINE Alu 1 288 -25 1111 169 62 71 chr1 8434344 8434479 -273759185 - MER44D DNA MER2_type -1886 605 470 2351 101 0 19 chr1 8434479 8434795 -273758869 + AluSg SINE Alu 1 310 0 1111 169 62 71 chr1 8434795 8434838 -273758826 - MER44D DNA MER2_type -2021 470 428 1929 160 0 3 chr1 8434838 8435131 -273758533 + AluJb SINE Alu 5 296 -16 1111 169 62 71 chr1 8435131 8435154 -273758510 - MER44D DNA MER2_type -2063 428 406 1750 144 26 49 chr1 8435154 8435297 -273758367 + AluJo SINE Alu 1 146 -166 1933 126 3 18 chr1 8435297 8435602 -273758062 + AluSx SINE Alu 1 301 0 1750 144 26 49 chr1 8435602 8435762 -273757902 + AluJo SINE Alu 146 298 -14 1111 169 62 71 chr1 8435762 8435896 -273757768 - MER44D DNA MER2_type -2085 406 1 1973 144 10 0 chr1 8435953 8436245 -273757419 + AluSx SINE Alu 16 310 -2 1141 162 6 6 chr1 8436245 8436424 -273757240 + AluJb SINE Alu 134 312 0 2203 100 7 20 chr1 8436593 8436894 -273756770 + AluSx SINE Alu 1 297 -15 2365 66 0 3 chr1 8437003 8437290 -273756374 + AluY SINE Alu 18 303 -8 2411 281 39 37 chr1 8437437 8438121 -273755543 + L2 LINE L2 989 1677 -1637 2382 111 0 0 chr1 8438121 8438428 -273755236 + AluSq SINE Alu 1 307 -6 2411 281 39 37 chr1 8438428 8438644 -273755020 + L2 LINE L2 1677 1891 -1423 2039 100 28 21 chr1 8438654 8438945 -273754719 + AluSx SINE Alu 10 302 -10 816 144 16 124 chr1 8439356 8439507 -273754157 + L1MCa LINE L1 352 479 -5947 2254 111 3 0 chr1 8439507 8439804 -273753860 - AluSp SINE Alu -15 298 1 816 144 16 124 chr1 8439804 8439846 -273753818 + L1MCa LINE L1 479 524 -5902 620 158 61 0 chr1 8439846 8439960 -273753704 + MER7A DNA MER2_type 1 119 -227 876 184 6 28 chr1 8439962 8440141 -273753523 + AluJb SINE Alu 137 311 -1 1401 209 43 7 chr1 8440184 8440461 -273753203 + AluJb SINE Alu 17 303 -9 226 214 18 0 chr1 8440461 8440517 -273753147 + L1MCa LINE L1 1779 1835 -4591 2351 113 3 0 chr1 8440519 8440828 -273752836 - AluSx SINE Alu -2 310 1 198 0 0 0 chr1 8440834 8440856 -273752808 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1545 197 0 35 chr1 8440857 8441174 -273752490 + AluJb SINE Alu 3 309 0 2012 152 3 3 chr1 8441175 8441485 -273752179 + AluSx SINE Alu 2 311 -1 484 135 10 0 chr1 8441485 8441589 -273752075 + L1MCa LINE L1 1821 1925 -4501 2376 80 0 20 chr1 8441711 8442012 -273751652 + AluY SINE Alu 1 295 -16 2111 109 56 0 chr1 8442142 8442427 -273751237 - AluSx SINE Alu -11 301 1 2276 95 7 0 chr1 8442459 8442754 -273750910 - AluSg SINE Alu -13 297 1 929 186 6 6 chr1 8442754 8442921 -273750743 - AluJb SINE Alu -15 297 131 1269 127 184 0 chr1 8443357 8443636 -273750028 - pTR5 LTR ERV1 -571 1692 57 17785 75 5 7 chr1 8443644 8446075 -273747589 - HERV9 LTR ERV1 0 8399 5972 2058 117 37 7 chr1 8446159 8446458 -273747206 - AluSc SINE Alu -1 308 1 976 87 0 8 chr1 8446485 8446612 -273747052 - AluSp/q SINE Alu -18 295 170 21 36 0 0 chr1 8446634 8446662 -273747002 + AT_rich Low_complexity Low_complexity 1 28 0 598 135 0 0 chr1 8446842 8446931 -273746733 - LTR8 LTR ERV1 0 691 603 2085 143 7 0 chr1 8446931 8447231 -273746433 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr1 8447234 8447281 -273746383 + A-rich Low_complexity Low_complexity 3 48 0 296 161 0 0 chr1 8447285 8447341 -273746323 - LTR8 LTR ERV1 -73 618 563 3549 102 33 38 chr1 8448545 8448599 -273745065 - LTR8 LTR ERV1 -113 578 525 2204 88 29 39 chr1 8448599 8448791 -273744873 - AluSg SINE Alu -5 305 116 2534 43 33 0 chr1 8448791 8449092 -273744572 - AluY SINE Alu 0 311 1 2204 88 29 39 chr1 8449092 8449207 -273744457 - AluSg SINE Alu -194 116 1 3549 102 33 38 chr1 8449207 8449733 -273743931 - LTR8 LTR ERV1 -166 525 1 581 251 70 32 chr1 8449736 8449923 -273743741 + L2 LINE L2 3120 3313 0 226 227 196 0 chr1 8450081 8450178 -273743486 - MER34 LTR ERV1 -57 485 370 827 213 34 78 chr1 8450278 8450546 -273743118 + LTR8 LTR ERV1 1 256 -435 2501 60 7 3 chr1 8450580 8450878 -273742786 + AluSp SINE Alu 1 299 -14 1011 187 0 21 chr1 8450888 8451075 -273742589 - AluJb SINE Alu -15 297 115 2388 92 0 7 chr1 8451076 8451381 -273742283 + AluY SINE Alu 1 303 -8 1527 83 5 0 chr1 8451386 8451590 -273742074 - MER51B LTR ERV1 -125 252 48 180 0 0 0 chr1 8451600 8451620 -273742044 + (T)n Simple_repeat Simple_repeat 1 20 0 246 49 0 0 chr1 8451620 8451661 -273742003 + Alu SINE Alu 260 300 0 212 143 24 0 chr1 8452091 8452133 -273741531 + (TA)n Simple_repeat Simple_repeat 1 43 0 215 61 30 0 chr1 8452133 8452166 -273741498 + (TG)n Simple_repeat Simple_repeat 2 35 0 354 288 34 14 chr1 8452302 8452448 -273741216 - L3 LINE CR1 -199 1378 1230 1690 191 10 16 chr1 8452580 8452884 -273740780 - AluJb SINE Alu -6 306 5 2580 62 7 0 chr1 8452922 8453230 -273740434 - AluY SINE Alu -1 310 1 2442 68 14 0 chr1 8453232 8453525 -273740139 - AluSq SINE Alu -16 297 1 1744 183 3 3 chr1 8453528 8453823 -273739841 - AluJo SINE Alu -17 295 1 368 248 21 78 chr1 8453827 8453951 -273739713 + L2 LINE L2 2513 2642 -672 1764 172 14 7 chr1 8453951 8454242 -273739422 + AluJo SINE Alu 1 293 -19 2233 130 0 0 chr1 8454242 8454550 -273739114 + AluSg SINE Alu 1 308 -2 368 248 21 78 chr1 8454550 8454565 -273739099 + L2 LINE L2 2640 2645 -669 622 246 0 0 chr1 8454807 8454941 -273738723 - MER58A DNA MER1_type -4 220 87 1234 148 9 32 chr1 8454941 8455157 -273738507 + AluJb SINE Alu 87 297 -15 357 205 141 0 chr1 8455157 8455235 -273738429 - MER58A DNA MER1_type -18 89 1 1052 220 81 23 chr1 8455362 8455621 -273738043 - MLT1A1 LTR MaLR -16 349 76 2070 133 10 10 chr1 8455621 8455923 -273737741 - AluSx SINE Alu -10 302 1 308 302 64 87 chr1 8455960 8456132 -273737532 - L3 LINE CR1 -1012 565 398 2168 104 10 0 chr1 8456262 8456550 -273737114 - AluSq SINE Alu -22 291 1 180 316 89 13 chr1 8457030 8457109 -273736555 + MIR SINE MIR 163 247 -15 2187 124 3 7 chr1 8457111 8457418 -273736246 - AluSx SINE Alu -6 306 1 2216 122 0 13 chr1 8458260 8458572 -273735092 + AluSq SINE Alu 1 308 -5 1639 161 7 52 chr1 8458590 8458741 -273734923 - AluJo SINE Alu -39 273 140 2367 97 3 0 chr1 8458741 8459040 -273734624 - AluSq SINE Alu -13 300 1 1639 161 7 52 chr1 8459040 8459174 -273734490 - AluJo SINE Alu -172 140 1 186 43 0 0 chr1 8459327 8459350 -273734314 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 8868 49 140 14 chr1 8459352 8460536 -273733128 + SVA Other Other 53 1385 -1 380 92 184 0 chr1 8460537 8460613 -273733051 + MER41A LTR ERV1 383 472 -82 186 43 0 0 chr1 8460614 8460637 -273733027 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 8460756 8461091 -273732573 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 8461117 8461165 -273732499 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 8461165 8461301 -273732363 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 8461840 8462148 -273731516 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 8462623 8462918 -273730746 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 8463603 8464173 -273729491 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 8464180 8464473 -273729191 + AluSq SINE Alu 6 299 -14 2122 118 7 3 chr1 8464486 8464791 -273728873 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 8464795 8465094 -273728570 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 8465094 8465218 -273728446 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 8465539 8465674 -273727990 + AluSq/x SINE Alu 1 135 -178 2323 112 0 13 chr1 8465674 8465988 -273727676 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 8466291 8466613 -273727051 + AluJo SINE Alu 1 295 -7 2313 100 7 0 chr1 8466712 8467012 -273726652 + AluSx SINE Alu 11 312 0 1667 163 0 80 chr1 8468745 8468883 -273724781 + AluJb SINE Alu 1 148 -164 1921 135 10 10 chr1 8468883 8469171 -273724493 + AluSx SINE Alu 1 288 -24 1667 163 0 80 chr1 8469171 8469358 -273724306 + AluJb SINE Alu 148 300 -12 1784 120 71 0 chr1 8469363 8469630 -273724034 + AluSx SINE Alu 21 306 -6 1461 313 66 28 chr1 8469676 8469898 -273723766 + L2 LINE L2 2086 2298 -1016 2630 98 17 3 chr1 8469898 8470257 -273723407 + THE1B LTR MaLR 1 364 0 1461 313 66 28 chr1 8470257 8470623 -273723041 + L2 LINE L2 2298 2688 -626 2268 106 7 0 chr1 8470623 8470916 -273722748 + AluSx SINE Alu 6 300 -12 1461 313 66 28 chr1 8470916 8471202 -273722462 + L2 LINE L2 2688 2962 -352 651 217 28 0 chr1 8471268 8471411 -273722253 + MLT1A1 LTR MaLR 1 147 -218 870 111 0 62 chr1 8471411 8471543 -273722121 + FRAM SINE Alu 1 30 -146 1036 118 35 0 chr1 8471543 8471712 -273721952 + L1PA8 LINE L1 5995 6169 -3 870 111 0 62 chr1 8471712 8471723 -273721941 + FRAM SINE Alu 30 40 0 998 169 43 0 chr1 8471751 8471935 -273721729 + MLT1A1 LTR MaLR 170 361 -4 1698 74 0 0 chr1 8471938 8472141 -273721523 - AluY SINE Alu -10 301 99 803 54 0 0 chr1 8472194 8472286 -273721378 - AluY SINE Alu -219 92 1 2268 106 0 17 chr1 8472291 8472455 -273721209 - AluSx SINE Alu -16 296 138 2186 108 7 16 chr1 8472455 8472762 -273720902 - AluSg SINE Alu -6 304 1 2268 106 0 17 chr1 8472762 8472898 -273720766 - AluSx SINE Alu -174 138 1 1095 221 57 57 chr1 8472909 8473231 -273720433 + MLT1C LTR MaLR 77 401 -66 2219 122 0 3 chr1 8473231 8473542 -273720122 - AluSx SINE Alu -2 310 1 1095 221 57 57 chr1 8473542 8473608 -273720056 + MLT1C LTR MaLR 400 465 -2 949 127 12 6 chr1 8473883 8474049 -273719615 + CT-rich Low_complexity Low_complexity 1 167 0 1999 132 31 3 chr1 8474064 8474351 -273719313 - AluSx SINE Alu -17 295 1 278 190 17 0 chr1 8475180 8475238 -273718426 - MIR SINE MIR -137 125 67 1187 246 91 9 chr1 8475257 8475654 -273718010 + MLT1K LTR MaLR 2 479 -109 2055 119 39 0 chr1 8476594 8476757 -273716907 - AluSx SINE Alu -16 296 141 2165 120 3 10 chr1 8476757 8477056 -273716608 - AluSq SINE Alu -16 297 1 180 0 0 0 chr1 8477062 8477082 -273716582 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2055 119 39 0 chr1 8477082 8477196 -273716468 - AluSx SINE Alu -175 137 1 195 42 0 0 chr1 8477547 8477571 -273716093 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 2387 110 0 0 chr1 8478321 8478631 -273715033 + AluSx SINE Alu 1 310 -2 261 0 0 0 chr1 8479098 8479127 -273714537 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2208 110 0 35 chr1 8479581 8479898 -273713766 - AluSx SINE Alu -6 306 1 1351 186 121 53 chr1 8479953 8480238 -273713426 + L1M4 LINE L1 4873 5198 -948 1962 155 3 19 chr1 8480238 8480555 -273713109 + AluJo SINE Alu 1 312 0 1351 186 121 53 chr1 8480555 8480699 -273712965 + L1M4 LINE L1 5198 5331 -815 2339 105 0 3 chr1 8480699 8481003 -273712661 + AluSx SINE Alu 1 303 -9 1360 131 80 55 chr1 8481008 8481245 -273712419 + AluJo SINE Alu 55 297 -15 1959 173 20 32 chr1 8481247 8481283 -273712381 + L1M4 LINE L1 5333 5368 -816 1770 163 51 10 chr1 8481283 8481577 -273712087 + AluJb SINE Alu 1 306 -6 1959 173 20 32 chr1 8481577 8481696 -273711968 + L1M4 LINE L1 5368 5487 -697 2447 89 0 0 chr1 8481696 8481999 -273711665 + AluSx SINE Alu 1 303 -9 1959 173 20 32 chr1 8481999 8482281 -273711383 + L1M4 LINE L1 5487 5766 -418 920 140 15 0 chr1 8482288 8482424 -273711240 + FRAM SINE Alu 18 155 -21 333 47 0 0 chr1 8482444 8482487 -273711177 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 941 158 35 12 chr1 8482509 8482680 -273710984 - FRAM SINE Alu -1 175 1 441 268 116 0 chr1 8482802 8482966 -273710698 - L2 LINE L2 -26 3287 3105 2123 65 46 55 chr1 8483215 8483522 -273710142 + AluY SINE Alu 1 304 -7 1067 201 27 5 chr1 8483522 8483746 -273709918 + L1M3 LINE L1 5441 5669 -511 383 111 10 4 chr1 8483746 8483954 -273709710 + AluJo SINE Alu 1 296 -4 280 206 118 81 chr1 8484722 8484788 -273708876 - Charlie8 DNA MER1_type -2219 198 136 1399 175 68 51 chr1 8484788 8484931 -273708733 + AluJo SINE Alu 1 140 -172 2211 98 0 7 chr1 8484931 8485243 -273708421 + AluSg SINE Alu 1 310 0 1399 175 68 51 chr1 8485243 8485390 -273708274 + AluJo SINE Alu 140 297 -15 280 206 118 81 chr1 8485390 8485459 -273708205 - Charlie8 DNA MER1_type -2281 136 58 323 275 158 35 chr1 8485471 8485584 -273708080 + L1ME1 LINE L1 5970 6112 -54 2156 118 5 68 chr1 8485584 8485760 -273707904 + THE1C LTR MaLR 1 186 -189 2375 93 0 10 chr1 8485760 8486073 -273707591 - AluSx SINE Alu -1 311 2 2156 118 5 68 chr1 8486073 8486296 -273707368 + THE1C LTR MaLR 186 375 0 323 275 158 35 chr1 8486296 8486353 -273707311 + L1ME1 LINE L1 6112 6161 -5 2070 124 0 0 chr1 8486436 8486709 -273706955 - AluSx SINE Alu -19 293 21 205 279 13 63 chr1 8486871 8486950 -273706714 - MIR SINE MIR -108 154 80 723 188 85 6 chr1 8487290 8487455 -273706209 - MER5B DNA MER1_type 0 178 1 722 160 128 19 chr1 8487475 8487631 -273706033 - AluJo SINE Alu -20 292 120 2135 131 0 0 chr1 8487637 8487927 -273705737 + AluSx SINE Alu 1 290 -22 606 221 14 0 chr1 8488509 8488649 -273705015 + ERVL-C1 LTR ERVL 5615 5756 -8 516 208 95 135 chr1 8488651 8488817 -273704847 + MLT2C1 LTR ERVL 3 151 -246 2045 133 14 7 chr1 8488817 8489111 -273704553 - AluSx SINE Alu -16 296 1 516 208 95 135 chr1 8489111 8489271 -273704393 + MLT2C1 LTR ERVL 151 316 -81 853 206 13 0 chr1 8489286 8489441 -273704223 - AluJb SINE Alu -26 286 130 2061 128 7 14 chr1 8489626 8489796 -273703868 - AluSx SINE Alu -7 305 136 2397 95 0 0 chr1 8489796 8490092 -273703572 - AluSg SINE Alu -14 296 1 2061 128 7 14 chr1 8490092 8490217 -273703447 - AluSx SINE Alu -176 136 12 189 0 0 0 chr1 8491796 8491817 -273701847 + (A)n Simple_repeat Simple_repeat 1 21 0 1626 114 63 20 chr1 8491825 8492080 -273701584 + AluSx SINE Alu 35 300 -12 600 135 0 0 chr1 8492101 8492197 -273701467 + FRAM SINE Alu 73 168 -8 619 116 0 0 chr1 8493551 8493637 -273700027 - FLAM_C SINE Alu -37 106 21 1452 194 11 29 chr1 8494243 8494521 -273699143 - AluJo SINE Alu -39 273 1 463 271 97 7 chr1 8494670 8494814 -273698850 + MIR SINE MIR 7 163 -99 844 80 36 0 chr1 8495908 8496020 -273697644 + AluSg/x SINE Alu 195 310 -2 677 164 0 62 chr1 8496592 8496720 -273696944 - FLAM_A SINE Alu -12 121 2 354 235 44 88 chr1 8496785 8496921 -273696743 - MIR SINE MIR -71 191 62 1979 94 94 4 chr1 8497468 8497745 -273695919 - AluY SINE Alu -9 302 1 332 256 231 20 chr1 8498388 8498587 -273695077 - MARNA DNA Mariner -184 402 162 1603 167 42 48 chr1 8498592 8498903 -273694761 - AluJb SINE Alu -3 309 1 2271 123 0 0 chr1 8499474 8499775 -273693889 - AluSx SINE Alu -11 301 1 185 138 0 0 chr1 8502153 8502182 -273691482 - MER5A DNA MER1_type -33 156 128 230 254 0 0 chr1 8502243 8502302 -273691362 - Charlie5 DNA MER1_type -27 2585 2527 2187 119 3 0 chr1 8502303 8502596 -273691068 - AluSx SINE Alu -16 296 3 657 186 120 42 chr1 8503080 8503247 -273690417 + L1MC1 LINE L1 6137 6316 -17 2312 109 0 16 chr1 8504209 8504522 -273689142 + AluSx SINE Alu 4 311 -1 749 96 88 0 chr1 8505057 8505182 -273688482 - MER85 DNA T2_type -3 136 1 189 171 0 0 chr1 8505213 8505248 -273688416 + A-rich Low_complexity Low_complexity 1 35 0 703 114 0 61 chr1 8505704 8505836 -273687828 - FLAM_C SINE Alu -9 124 1 273 177 89 25 chr1 8506349 8506428 -273687236 - L1ME1 LINE L1 -117 6049 5966 1000 50 10 5 chr1 8506532 8506732 -273686932 + AluY SINE Alu 2 302 -9 1967 87 66 35 chr1 8506760 8506908 -273686756 - AluSq SINE Alu -13 300 158 1876 85 143 0 chr1 8506908 8507167 -273686497 - AluY SINE Alu -15 296 1 1967 87 66 35 chr1 8507167 8507307 -273686357 - AluSq SINE Alu -155 158 3 2156 60 19 82 chr1 8507681 8507999 -273685665 + AluSp SINE Alu 1 298 -15 2471 81 0 3 chr1 8511209 8511519 -273682145 + AluSg SINE Alu 2 310 0 1362 182 34 51 chr1 8511541 8511837 -273681827 + AluJo SINE Alu 3 293 -19 2142 108 29 32 chr1 8511840 8512154 -273681510 + AluSq SINE Alu 1 313 0 2322 110 3 0 chr1 8512164 8512465 -273681199 + AluSx SINE Alu 1 302 -10 2457 92 3 0 chr1 8512558 8512864 -273680800 - AluY SINE Alu -4 307 1 2196 112 0 16 chr1 8512887 8513190 -273680474 - AluSg SINE Alu -12 298 1 201 39 0 0 chr1 8513190 8513216 -273680448 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2008 128 0 3 chr1 8513216 8513498 -273680166 - AluSg SINE Alu -29 281 1 33 0 0 0 chr1 8513499 8513532 -273680132 + AT_rich Low_complexity Low_complexity 1 33 0 546 144 0 52 chr1 8513532 8513629 -273680035 - U6 snRNA snRNA -2 105 14 2374 90 3 0 chr1 8514082 8514382 -273679282 - AluSp SINE Alu -12 301 1 2238 117 3 7 chr1 8514639 8514946 -273678718 + AluSx SINE Alu 1 306 -6 2183 104 10 0 chr1 8515507 8515795 -273677869 + AluSq SINE Alu 1 291 -22 274 319 59 89 chr1 8515928 8516097 -273677567 + L3 LINE CR1 402 565 -1012 2083 133 10 10 chr1 8516134 8516436 -273677228 + AluSx SINE Alu 1 302 -10 1087 220 81 23 chr1 8516436 8516695 -273676969 + MLT1A1 LTR MaLR 76 349 -16 366 205 141 0 chr1 8516822 8516900 -273676764 + MER58A DNA MER1_type 1 89 -18 1240 148 9 32 chr1 8516900 8517116 -273676548 - AluJb SINE Alu -15 297 87 639 246 0 0 chr1 8517116 8517250 -273676414 + MER58A DNA MER1_type 87 220 -4 2239 130 0 0 chr1 8517507 8517815 -273675849 - AluSg SINE Alu -2 308 1 1768 172 14 7 chr1 8517815 8518106 -273675558 - AluJo SINE Alu -19 293 1 346 233 25 50 chr1 8518110 8518230 -273675434 - L2 LINE L2 -685 2629 2513 1758 183 3 3 chr1 8518234 8518529 -273675135 + AluJo SINE Alu 1 295 -17 2454 68 14 0 chr1 8518532 8518825 -273674839 + AluSq SINE Alu 1 297 -16 2593 62 7 0 chr1 8518827 8519135 -273674529 + AluY SINE Alu 1 310 -1 1696 191 10 16 chr1 8519173 8519477 -273674187 + AluJb SINE Alu 5 306 -6 354 294 34 14 chr1 8519609 8519755 -273673909 + L3 LINE CR1 1230 1378 -199 215 61 30 0 chr1 8519891 8519924 -273673740 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 143 24 0 chr1 8519924 8519966 -273673698 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 49 0 0 chr1 8520396 8520437 -273673227 - Alu SINE Alu 0 300 260 180 0 0 0 chr1 8520437 8520457 -273673207 + (A)n Simple_repeat Simple_repeat 1 20 0 1513 88 5 0 chr1 8520467 8520671 -273672993 + MER51B LTR ERV1 48 252 -125 2388 92 0 7 chr1 8520676 8520981 -273672683 - AluY SINE Alu -8 303 1 1011 187 0 21 chr1 8520982 8521169 -273672495 + AluJb SINE Alu 115 297 -15 2501 60 7 3 chr1 8521179 8521477 -273672187 - AluSp SINE Alu -14 299 1 827 213 34 78 chr1 8521511 8521779 -273671885 - LTR8 LTR ERV1 -435 256 1 226 227 196 0 chr1 8521879 8521976 -273671688 + MER34 LTR ERV1 370 485 -57 581 251 70 32 chr1 8522134 8522321 -273671343 - L2 LINE L2 0 3313 3120 3549 102 33 38 chr1 8522324 8522850 -273670814 + LTR8 LTR ERV1 1 525 -166 2204 88 29 39 chr1 8522850 8522965 -273670699 + AluSg SINE Alu 1 116 -194 2534 43 33 0 chr1 8522965 8523266 -273670398 + AluY SINE Alu 1 311 0 2204 88 29 39 chr1 8523266 8523458 -273670206 + AluSg SINE Alu 116 305 -5 3549 102 33 38 chr1 8523458 8523512 -273670152 + LTR8 LTR ERV1 525 578 -113 311 143 0 0 chr1 8524714 8524770 -273668894 + LTR8 LTR ERV1 563 618 -73 206 170 0 21 chr1 8524774 8524821 -273668843 + T-rich Low_complexity Low_complexity 3 48 0 2085 143 7 0 chr1 8524824 8525124 -273668540 - AluSx SINE Alu -10 302 1 598 135 0 0 chr1 8525124 8525213 -273668451 + LTR8 LTR ERV1 603 691 0 21 36 0 0 chr1 8525393 8525421 -273668243 + AT_rich Low_complexity Low_complexity 1 28 0 976 87 0 8 chr1 8525443 8525570 -273668094 + AluSp/q SINE Alu 170 295 -18 2058 117 37 7 chr1 8525597 8525896 -273667768 + AluSc SINE Alu 1 308 -1 17779 75 5 7 chr1 8525980 8528411 -273665253 + HERV9 LTR ERV1 5972 8399 0 6166 66 45 21 chr1 8528411 8529218 -273664446 + LTR12 LTR ERV1 1 826 0 1486 129 160 4 chr1 8529221 8529477 -273664187 - AluJo SINE Alu -16 296 1 2145 136 3 0 chr1 8529508 8529816 -273663848 - AluSq SINE Alu -4 309 1 2081 119 0 20 chr1 8529819 8530122 -273663542 - AluSx SINE Alu -15 297 1 501 125 25 0 chr1 8530188 8530268 -273663396 - MER41B LTR ERV1 -221 414 333 1812 146 36 4 chr1 8530270 8530545 -273663119 + AluSx SINE Alu 1 284 -28 183 42 0 0 chr1 8530545 8530569 -273663095 + (CTAAA)n Simple_repeat Simple_repeat 2 25 0 1278 154 0 43 chr1 8530581 8530752 -273662912 - MER41B LTR ERV1 -282 353 193 2260 105 7 0 chr1 8530752 8531046 -273662618 - AluSg SINE Alu -14 296 1 1278 154 0 43 chr1 8531046 8531108 -273662556 - MER41B LTR ERV1 -442 193 130 2121 129 0 41 chr1 8531135 8531307 -273662357 - AluSx SINE Alu -8 304 126 576 0 0 0 chr1 8531307 8531371 -273662293 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2053 145 3 0 chr1 8531371 8531654 -273662010 - AluSq SINE Alu -29 284 1 2121 129 0 41 chr1 8531654 8531797 -273661867 - AluSx SINE Alu -184 128 1 1348 148 145 17 chr1 8531817 8532107 -273661557 + LTR47A LTR ERVL 124 450 -2 2301 105 0 0 chr1 8532123 8532419 -273661245 - AluSx SINE Alu -16 296 1 876 184 180 39 chr1 8532555 8532811 -273660853 + MER21A LTR ERV1 1 292 -639 * 1224 107 32 0 chr1 8532791 8532978 -273660686 - MER30 DNA MER1_type -37 193 1 * 3133 159 87 29 chr1 8532978 8533344 -273660320 + MER21A LTR ERV1 245 588 -343 2242 93 0 0 chr1 8533344 8533624 -273660040 + AluSx SINE Alu 1 280 -32 224 77 26 0 chr1 8533626 8533665 -273659999 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3133 159 87 29 chr1 8533665 8533936 -273659728 + MER21A LTR ERV1 588 922 -9 294 95 0 0 chr1 8534488 8534530 -273659134 + (TCTCC)n Simple_repeat Simple_repeat 4 45 0 1632 161 0 16 chr1 8534530 8534779 -273658885 - AluJb SINE Alu -33 279 35 351 273 104 44 chr1 8534912 8535095 -273658569 + L1MEd LINE L1 619 812 -5307 222 62 0 0 chr1 8535095 8535127 -273658537 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1945 108 71 0 chr1 8535127 8535395 -273658269 - AluSx SINE Alu -25 287 1 183 129 0 0 chr1 8535440 8535471 -273658193 + (TC)n Simple_repeat Simple_repeat 2 32 0 2296 121 0 3 chr1 8535473 8535786 -273657878 - AluSx SINE Alu 0 312 1 314 339 99 0 chr1 8536149 8536341 -273657323 + L1MEd LINE L1 617 827 -5292 2363 122 0 0 chr1 8536375 8536687 -273656977 - AluSx SINE Alu 0 312 1 2673 40 0 3 chr1 8536691 8536995 -273656669 - AluYa5 SINE Alu -7 304 2 2810 22 0 10 chr1 8536998 8537312 -273656352 - AluYa5 SINE Alu 0 311 1 924 145 0 0 chr1 8537315 8537446 -273656218 - AluJo/FLAM SINE Alu -181 131 1 1254 86 0 32 chr1 8537912 8538098 -273655566 - HERVK9 LTR ERVK -4111 1805 1626 * 4176 89 63 17 chr1 8538094 8538732 -273654932 - HERVK9 LTR ERVK -5249 667 1 1353 148 76 8 chr1 8538732 8538982 -273654682 - MER9 LTR ERVK 0 511 245 519 202 0 0 chr1 8539005 8539089 -273654575 - AluJ/FLAM SINE Alu -224 88 5 306 325 57 57 chr1 8539110 8539334 -273654330 + LTR16A LTR ERVL 145 368 -82 835 143 8 0 chr1 8539334 8539460 -273654204 - L1PB2 LINE L1 -3 6148 6022 306 325 57 57 chr1 8539460 8539473 -273654191 + LTR16A LTR ERVL 368 380 -70 2375 71 0 0 chr1 8539473 8539782 -273653882 - AluSc SINE Alu 0 309 1 306 325 57 57 chr1 8539782 8539840 -273653824 + LTR16A LTR ERVL 379 442 -8 388 303 0 0 chr1 8540027 8540136 -273653528 - L2 LINE L2 -481 2833 2725 1078 117 0 25 chr1 8540151 8540314 -273653350 - AluSg/x SINE Alu -17 293 135 628 260 235 6 chr1 8540387 8540749 -273652915 - L2 LINE L2 -703 2611 2167 1500 157 8 16 chr1 8540899 8541147 -273652517 + AluJb SINE Alu 53 298 -14 232 167 0 42 chr1 8541396 8541444 -273652220 + T-rich Low_complexity Low_complexity 2 47 0 191 61 30 0 chr1 8542008 8542041 -273651623 + (CAA)n Simple_repeat Simple_repeat 1 34 0 5859 23 0 0 chr1 8542275 8542891 -273650773 + SVA Other Other 770 1385 -1 380 92 184 0 chr1 8542892 8542968 -273650696 + MER41A LTR ERV1 383 472 -82 186 43 0 0 chr1 8542969 8542992 -273650672 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 8543111 8543446 -273650218 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 8543472 8543520 -273650144 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 8543520 8543656 -273650008 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 8544195 8544503 -273649161 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 8544978 8545273 -273648391 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 8545958 8546528 -273647136 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 8546535 8546828 -273646836 + AluSq SINE Alu 6 299 -14 2106 115 10 3 chr1 8546841 8547145 -273646519 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 8547150 8547449 -273646215 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 8547449 8547573 -273646091 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 8547894 8548029 -273645635 + AluSq/x SINE Alu 1 135 -177 2323 112 0 13 chr1 8548029 8548343 -273645321 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 8548646 8548968 -273644696 + AluJo SINE Alu 1 295 -7 2328 95 16 0 chr1 8549058 8549362 -273644302 + AluSq SINE Alu 1 309 -4 2193 105 0 0 chr1 8549693 8549970 -273643694 - AluSx SINE Alu -34 278 2 2183 137 0 0 chr1 8549974 8550274 -273643390 - AluSx SINE Alu -8 304 5 812 168 0 0 chr1 8550431 8550556 -273643108 - FLAM_A SINE Alu -8 125 1 2116 138 0 3 chr1 8550610 8550906 -273642758 + AluSx SINE Alu 1 295 -17 585 118 12 0 chr1 8550909 8550994 -273642670 + AluSx SINE Alu 2 87 -225 467 272 54 16 chr1 8551152 8551336 -273642328 + LTR21A LTR ERV1 300 490 -15 2531 179 43 14 chr1 8551337 8551894 -273641770 + HERVFH21 LTR ERV1 6 578 -5951 * 17789 188 20 23 chr1 8551885 8554169 -273639495 + HERVFH21 LTR ERV1 536 2831 -3698 1931 134 4 0 chr1 8554169 8554438 -273639226 - AluSg SINE Alu -40 270 1 17789 188 20 23 chr1 8554438 8556079 -273637585 + HERVFH21 LTR ERV1 2831 4476 -2053 2443 266 28 21 chr1 8556597 8557421 -273636243 + HERVFH21 LTR ERV1 5700 6529 0 484 261 56 17 chr1 8557589 8557769 -273635895 + LTR21A LTR ERV1 300 486 -19 1376 142 110 0 chr1 8557769 8557988 -273635676 + AluSx SINE Alu 70 312 0 2715 42 0 6 chr1 8558039 8558351 -273635313 - AluY SINE Alu -1 310 1 938 144 0 0 chr1 8558445 8558577 -273635087 + FLAM_A SINE Alu 1 132 -1 185 309 0 0 chr1 8558620 8558675 -273634989 + L2 LINE L2 2486 2540 -774 622 282 81 69 chr1 8558722 8558795 -273634869 - MLT1L LTR MaLR 0 615 544 2390 105 0 0 chr1 8558795 8559101 -273634563 + AluSg1 SINE Alu 1 306 -3 622 282 81 69 chr1 8559101 8559346 -273634318 - MLT1L LTR MaLR -71 544 288 1979 140 0 45 chr1 8559346 8559515 -273634149 - AluJo SINE Alu -10 302 152 2002 131 46 0 chr1 8559515 8559798 -273633866 - AluSx SINE Alu -15 297 2 1979 140 0 45 chr1 8559798 8559942 -273633722 - AluJo SINE Alu -160 152 3 622 282 81 69 chr1 8559942 8560030 -273633634 - MLT1L LTR MaLR -327 288 203 247 295 0 0 chr1 8559997 8560058 -273633606 - MLT1J LTR MaLR -340 171 111 * 200 111 0 28 chr1 8560194 8560230 -273633434 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 336 302 31 0 chr1 8560230 8560359 -273633305 - L1M4 LINE L1 -2400 3746 3614 599 234 8 0 chr1 8560363 8560487 -273633177 - MER58B DNA MER1_type -6 335 211 523 340 87 4 chr1 8560533 8560774 -273632890 - L1M4 LINE L1 -2539 3607 3347 606 125 40 125 chr1 8560779 8560830 -273632834 - L1MB2 LINE L1 0 6171 6117 2290 104 0 0 chr1 8560830 8561129 -273632535 - AluSq SINE Alu -14 299 1 606 125 40 125 chr1 8561129 8561229 -273632435 - L1MB2 LINE L1 -54 6117 6033 2165 133 0 3 chr1 8561241 8561541 -273632123 - AluSx SINE Alu -13 299 1 1664 177 0 16 chr1 8561541 8561858 -273631806 - L1MB4 LINE L1 -43 6137 5826 2269 109 0 28 chr1 8561928 8562249 -273631415 - AluSx SINE Alu 0 312 1 389 20 20 0 chr1 8562250 8562300 -273631364 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1898 130 0 60 chr1 8562300 8562600 -273631064 - AluSx SINE Alu -30 282 1 585 143 0 31 chr1 8562605 8562703 -273630961 - AluJo SINE Alu -176 136 42 252 147 0 0 chr1 8562773 8562816 -273630848 + Alu SINE Alu 1 36 -272 2103 226 69 39 chr1 8562919 8563171 -273630493 - L1ME3A LINE L1 -202 5968 5725 1919 156 21 0 chr1 8563171 8563459 -273630205 - AluJb SINE Alu -18 294 1 2103 226 69 39 chr1 8563459 8563673 -273629991 - L1ME3A LINE L1 -445 5725 5519 2494 104 11 16 chr1 8563673 8564039 -273629625 - THE1B LTR MaLR 0 364 1 2103 226 69 39 chr1 8564039 8564362 -273629302 - L1ME3A LINE L1 -651 5519 5157 662 160 48 40 chr1 8564363 8564488 -273629176 - FLAM_C SINE Alu -3 130 5 2491 86 0 0 chr1 8564535 8564838 -273628826 - AluY SINE Alu -8 303 1 2153 144 0 0 chr1 8564873 8565172 -273628492 - AluSx SINE Alu -13 299 1 2170 96 34 7 chr1 8565184 8565477 -273628187 - AluY SINE Alu -10 301 1 231 36 0 0 chr1 8565488 8565516 -273628148 + (A)n Simple_repeat Simple_repeat 1 28 0 1716 181 3 14 chr1 8565599 8565887 -273627777 + AluJb SINE Alu 1 285 -27 305 181 29 0 chr1 8565959 8566035 -273627629 - L1MC3 LINE L1 0 7785 7716 226 164 66 0 chr1 8566068 8566129 -273627535 - L1ME3A LINE L1 -1779 4367 4303 1826 175 21 0 chr1 8566198 8566484 -273627180 + AluJb SINE Alu 2 293 -19 2181 102 0 3 chr1 8566490 8566815 -273626849 + AluSg SINE Alu 1 324 0 258 105 0 0 chr1 8566989 8567027 -273626637 + (A)n Simple_repeat Simple_repeat 1 38 0 1399 128 5 0 chr1 8567381 8567577 -273626087 - AluSx SINE Alu -115 197 1 2013 118 29 0 chr1 8567925 8568245 -273625419 - AluSx SINE Alu 0 312 1 394 227 31 0 chr1 8568247 8568344 -273625320 + HERVL40 LTR ERVL 3519 3618 -1912 1940 129 0 48 chr1 8568370 8568532 -273625132 - AluJb SINE Alu -18 294 126 243 0 0 0 chr1 8568532 8568559 -273625105 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2130 121 4 0 chr1 8568559 8568840 -273624824 - AluSg SINE Alu -28 282 1 1940 129 0 48 chr1 8568840 8568985 -273624679 - AluJb SINE Alu -184 128 1 909 141 83 26 chr1 8569279 8569471 -273624193 + MLT1D LTR MaLR 1 203 -302 738 179 46 35 chr1 8569895 8569939 -273623725 + MER61D LTR ERV1 314 356 -145 4083 98 19 20 chr1 8569939 8570534 -273623130 - LTR61 LTR ERV1 0 595 2 738 179 46 35 chr1 8570534 8570672 -273622992 + MER61D LTR ERV1 356 483 -18 1305 152 26 4 chr1 8570713 8570944 -273622720 + MLT1D LTR MaLR 270 505 0 2587 83 0 0 chr1 8572066 8572379 -273621285 + AluSq SINE Alu 1 313 0 1399 128 5 0 chr1 8572744 8572940 -273620724 - AluSx SINE Alu -115 197 1 2361 110 0 0 chr1 8573303 8573613 -273620051 - AluSx SINE Alu -2 310 1 857 118 28 107 chr1 8574035 8574213 -273619451 + AluJb SINE Alu 149 312 0 223 244 282 0 chr1 8575290 8575368 -273618296 + MIR3 SINE MIR 62 161 -47 186 304 144 24 chr1 8575375 8575478 -273618186 - MIR SINE MIR -23 239 117 1930 153 36 0 chr1 8575478 8575779 -273617885 + AluJb SINE Alu 1 312 0 186 304 144 24 chr1 8575779 8575800 -273617864 - MIR SINE MIR -145 117 100 347 189 175 34 chr1 8575825 8575951 -273617713 - MIR SINE MIR -78 130 1 2234 113 20 0 chr1 8577220 8577521 -273616143 - AluSx SINE Alu -5 307 1 2374 110 0 0 chr1 8577983 8578293 -273615371 - AluSx SINE Alu -2 310 1 2176 101 14 10 chr1 8579040 8579337 -273614327 - AluSp SINE Alu -15 298 1 2435 87 0 0 chr1 8579877 8580175 -273613489 + AluSx SINE Alu 1 298 -14 2348 93 0 13 chr1 8581171 8581473 -273612191 - AluSx SINE Alu -14 298 1 294 376 99 3 chr1 8581537 8581714 -273611950 - MIR3 SINE MIR -65 143 2 1920 145 14 3 chr1 8581776 8582073 -273611591 + AluJb SINE Alu 1 300 -12 2470 102 0 0 chr1 8582123 8582436 -273611228 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 8582990 8583013 -273610651 + AT_rich Low_complexity Low_complexity 1 23 0 2035 150 0 0 chr1 8583016 8583309 -273610355 - AluSx SINE Alu -19 293 1 2195 124 0 0 chr1 8583335 8583626 -273610038 - AluSx SINE Alu -21 291 1 2277 102 0 0 chr1 8583853 8584146 -273609518 - AluSx SINE Alu -19 293 1 2201 136 94 26 chr1 8584147 8584531 -273609133 - L1MC1 LINE L1 -236 6097 5741 1652 169 25 18 chr1 8584531 8584809 -273608855 + AluJb SINE Alu 1 280 -32 348 24 0 0 chr1 8584809 8584850 -273608814 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 2201 136 94 26 chr1 8584850 8584920 -273608744 - L1MC1 LINE L1 -591 5742 5611 4009 104 3 28 chr1 8584920 8585363 -273608301 + MER41A LTR ERV1 1 428 -126 2034 131 24 0 chr1 8585363 8585654 -273608010 - AluSx SINE Alu -14 298 1 4009 104 3 28 chr1 8585654 8585778 -273607886 + MER41A LTR ERV1 428 554 0 475 253 20 0 chr1 8585778 8585924 -273607740 - L1M4 LINE L1 -1567 4579 4431 997 127 0 0 chr1 8585930 8586064 -273607600 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr1 8586069 8586092 -273607572 + AT_rich Low_complexity Low_complexity 1 23 0 299 239 125 11 chr1 8586150 8586238 -273607426 - MER5C DNA MER1_type -203 121 24 1932 150 7 3 chr1 8586286 8586573 -273607091 + AluJb SINE Alu 3 290 -22 2348 99 0 0 chr1 8587131 8587424 -273606240 + AluSx SINE Alu 2 294 -18 1850 138 29 42 chr1 8587567 8587878 -273605786 + AluSx SINE Alu 1 307 -5 2354 108 0 0 chr1 8588525 8588830 -273604834 - AluSx SINE Alu -7 305 1 1568 186 0 32 chr1 8588856 8589136 -273604528 + AluJo SINE Alu 1 271 -41 2318 106 3 0 chr1 8589354 8589655 -273604009 - AluSq SINE Alu -9 304 3 2376 109 3 0 chr1 8590500 8590803 -273602861 - AluSq SINE Alu -9 304 1 2324 113 3 0 chr1 8590839 8591140 -273602524 + AluSq SINE Alu 1 302 -11 2271 112 3 0 chr1 8591140 8591435 -273602229 + AluSx SINE Alu 1 297 -15 1419 243 82 54 chr1 8591439 8591933 -273601731 + L1M4c LINE L1 816 1295 -5268 423 0 0 0 chr1 8591933 8591980 -273601684 + (CA)n Simple_repeat Simple_repeat 2 48 0 1419 243 82 54 chr1 8591980 8592852 -273600812 + L1M4c LINE L1 1295 2385 -4178 2294 89 13 22 chr1 8593147 8593462 -273600202 + AluSx SINE Alu 1 312 0 1054 298 74 70 chr1 8594300 8594738 -273598926 + L2 LINE L2 779 1214 -2100 1817 164 10 7 chr1 8594738 8595030 -273598634 - AluJb SINE Alu -19 293 1 1054 298 74 70 chr1 8595030 8595426 -273598238 + L2 LINE L2 1214 1620 -1694 2213 129 3 3 chr1 8595426 8595735 -273597929 - AluSc SINE Alu 0 309 1 1054 298 74 70 chr1 8595735 8595882 -273597782 + L2 LINE L2 1620 1765 -1549 2185 128 0 0 chr1 8596151 8596455 -273597209 + AluSx SINE Alu 1 304 -8 2923 155 27 37 chr1 8596456 8596795 -273596869 - L1MB3 LINE L1 -37 6146 5805 2248 112 3 0 chr1 8596795 8597090 -273596574 + AluSx SINE Alu 1 296 -16 2923 155 27 37 chr1 8597090 8597294 -273596370 - L1MB3 LINE L1 -378 5805 5607 2359 82 26 7 chr1 8597294 8597599 -273596065 - AluSx SINE Alu -1 311 1 2923 155 27 37 chr1 8597599 8597653 -273596011 - L1MB3 LINE L1 -576 5607 5554 30 0 0 0 chr1 8598154 8598184 -273595480 + AT_rich Low_complexity Low_complexity 1 30 0 888 129 0 0 chr1 8598188 8598312 -273595352 - FLAM_C SINE Alu -19 124 1 297 324 176 5 chr1 8598485 8598689 -273594975 - MIR SINE MIR -11 251 13 2193 129 7 0 chr1 8599153 8599455 -273594209 - AluSx SINE Alu -8 304 1 1113 256 66 69 chr1 8599543 8599923 -273593741 + L1MEd LINE L1 572 952 -5177 2175 118 3 7 chr1 8599923 8600220 -273593444 + AluSq SINE Alu 1 296 -17 2301 104 0 3 chr1 8600224 8600523 -273593141 + AluSg SINE Alu 2 299 -11 1113 256 66 69 chr1 8600523 8600805 -273592859 + L1MEd LINE L1 955 1236 -4893 192 40 0 0 chr1 8600805 8600830 -273592834 + (TC)n Simple_repeat Simple_repeat 2 26 0 1113 256 66 69 chr1 8600830 8601117 -273592547 + L1MEd LINE L1 1236 1482 -4647 2036 123 23 10 chr1 8601117 8601425 -273592239 + AluSx SINE Alu 1 312 0 1113 256 66 69 chr1 8601425 8601455 -273592209 + L1MEd LINE L1 1482 1511 -4618 2118 124 27 0 chr1 8601691 8601990 -273591674 - AluSx SINE Alu -5 307 1 2255 114 3 0 chr1 8602501 8602800 -273590864 - AluSx SINE Alu -12 300 1 1934 163 0 10 chr1 8603239 8603540 -273590124 - AluJo SINE Alu -14 298 1 2286 81 0 40 chr1 8603582 8603904 -273589760 + AluY SINE Alu 3 311 0 2208 83 17 10 chr1 8604219 8604507 -273589157 - AluSx SINE Alu -22 290 1 922 101 20 0 chr1 8604886 8605034 -273588630 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1921 137 11 4 chr1 8605034 8605312 -273588352 - AluJb SINE Alu -32 280 1 2422 84 0 7 chr1 8606451 8606759 -273586905 - AluSc SINE Alu -3 306 1 2094 138 17 0 chr1 8606759 8607050 -273586614 - AluSx SINE Alu -16 296 1 943 178 11 11 chr1 8607394 8607568 -273586096 - FRAM SINE Alu -3 173 1 365 274 162 0 chr1 8607791 8607908 -273585756 - MIR SINE MIR -112 150 15 317 353 59 0 chr1 8607922 8608041 -273585623 - L2 LINE L2 -1 3271 3146 235 308 185 10 chr1 8608229 8608424 -273585240 - L2 LINE L2 -384 2930 2702 2275 72 11 7 chr1 8608607 8608959 -273584705 + AluSc SINE Alu 1 353 0 321 256 11 0 chr1 8608986 8609076 -273584588 + L1MC5 LINE L1 5711 5801 -2007 2154 102 17 7 chr1 8609102 8609395 -273584269 - AluSg SINE Alu -14 296 1 2697 48 0 0 chr1 8609541 8609852 -273583812 + AluY SINE Alu 1 311 0 1973 158 7 0 chr1 8610383 8610680 -273582984 + AluJb SINE Alu 1 299 -13 907 226 18 148 chr1 8610685 8610743 -273582921 + L1MC5 LINE L1 6530 6594 -1214 2255 148 0 0 chr1 8610743 8611061 -273582603 - 7SLRNA srpRNA srpRNA -2 318 1 907 226 18 148 chr1 8611061 8611179 -273582485 + L1MC5 LINE L1 6594 6726 -1082 2280 105 0 3 chr1 8611179 8611474 -273582190 - AluSx SINE Alu -18 294 1 907 226 18 148 chr1 8611474 8611571 -273582093 + L1MC5 LINE L1 6726 6834 -974 839 148 0 15 chr1 8611571 8611706 -273581958 + FLAM_C SINE Alu 1 133 0 907 226 18 148 chr1 8611706 8612053 -273581611 + L1MC5 LINE L1 6834 7001 -807 1062 231 162 35 chr1 8612072 8612449 -273581215 - MLT1D LTR MaLR 0 505 81 224 194 0 0 chr1 8612449 8612485 -273581179 + polypyrimidine Low_complexity Low_complexity 3 38 0 462 152 26 53 chr1 8612486 8612637 -273581027 + CT-rich Low_complexity Low_complexity 2 148 0 1556 171 16 49 chr1 8612662 8612967 -273580697 - AluJb SINE Alu -17 295 1 267 141 169 42 chr1 8612967 8613038 -273580626 - MLT1D LTR MaLR -418 87 8 266 200 11 89 chr1 8613073 8613163 -273580501 + L1MC5 LINE L1 7151 7233 -728 228 67 0 0 chr1 8613201 8613231 -273580433 + (CTATT)n Simple_repeat Simple_repeat 3 32 0 320 308 31 31 chr1 8613342 8613472 -273580192 + L2 LINE L2 3184 3313 0 917 285 88 9 chr1 8613480 8613984 -273579680 + L1ME2 LINE L1 5268 5829 -335 2520 71 0 10 chr1 8614013 8614324 -273579340 + AluSc SINE Alu 1 308 -1 1877 164 3 19 chr1 8614352 8614669 -273578995 + AluJb SINE Alu 1 312 0 1506 209 31 48 chr1 8614761 8615115 -273578549 + MER7A DNA MER2_type 1 346 0 1876 124 44 0 chr1 8615181 8615455 -273578209 + AluJb SINE Alu 12 297 -15 564 144 33 39 chr1 8615477 8615658 -273578006 + GA-rich Low_complexity Low_complexity 1 180 0 218 314 14 0 chr1 8615798 8615868 -273577796 + L2 LINE L2 2694 2764 -550 2346 95 7 0 chr1 8615933 8616228 -273577436 - AluSx SINE Alu -15 297 1 273 303 162 22 chr1 8616228 8616413 -273577251 + L2 LINE L2 2754 2964 -350 848 165 0 23 chr1 8616935 8617068 -273576596 + AluJo SINE Alu 5 134 -178 255 281 247 0 chr1 8617115 8617261 -273576403 - MIR SINE MIR -75 187 6 2016 138 3 0 chr1 8617643 8617939 -273575725 + AluJo SINE Alu 1 297 -15 2078 141 0 0 chr1 8618191 8618488 -273575176 - AluJo SINE Alu -13 299 3 2156 131 0 0 chr1 8618520 8618832 -273574832 + AluSx SINE Alu 1 312 0 285 227 0 15 chr1 8619448 8619514 -273574150 - MIR3 SINE MIR -31 177 113 1889 125 38 0 chr1 8620584 8620871 -273572793 + AluSx SINE Alu 1 298 -14 1864 127 30 17 chr1 8621505 8621805 -273571859 - AluJb SINE Alu -8 304 1 407 335 42 47 chr1 8621817 8622053 -273571611 + L1MEc LINE L1 2099 2333 -4063 1695 139 63 33 chr1 8622070 8622373 -273571291 + AluJo SINE Alu 1 312 0 1932 109 4 0 chr1 8622406 8622671 -273570993 - AluSx SINE Alu -46 266 1 550 317 27 57 chr1 8623001 8623370 -273570294 + L2 LINE L2 2331 2688 -626 1658 153 42 14 chr1 8623387 8623674 -273569990 - AluJo SINE Alu -17 295 1 391 49 49 0 chr1 8623677 8623738 -273569926 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 545 319 59 11 chr1 8623787 8624060 -273569604 - MLT1K LTR MaLR 0 588 303 2037 112 53 30 chr1 8624199 8624538 -273569126 - THE1B LTR MaLR -17 347 1 262 329 0 0 chr1 8624538 8624611 -273569053 + L1MEd LINE L1 446 518 -5601 358 323 51 15 chr1 8624614 8624809 -273568855 + L1MC5 LINE L1 7498 7699 -262 2000 118 0 7 chr1 8624816 8625113 -273568551 - AluSc SINE Alu -14 295 1 251 293 65 83 chr1 8625712 8625942 -273567722 - MIR SINE MIR -4 258 35 2169 125 0 0 chr1 8625945 8626257 -273567407 - AluSx SINE Alu 0 312 1 2280 78 3 0 chr1 8626353 8626649 -273567015 + AluY SINE Alu 1 297 -14 2146 97 7 0 chr1 8626650 8626939 -273566725 + AluSq SINE Alu 1 291 -22 1595 204 0 6 chr1 8626939 8627253 -273566411 - AluJo SINE Alu 0 312 1 2648 220 73 31 chr1 8627275 8627973 -273565691 - L1ME1 LINE L1 -36 6130 5394 2111 86 24 10 chr1 8627973 8628263 -273565401 - AluSq SINE Alu -19 294 1 2648 220 73 31 chr1 8628263 8628342 -273565322 - L1ME1 LINE L1 -772 5394 5320 869 189 0 0 chr1 8628343 8628524 -273565140 + FRAM SINE Alu 1 179 0 2052 206 57 66 chr1 8628530 8628583 -273565081 - L1ME1 LINE L1 -813 5333 5281 2247 87 10 0 chr1 8628583 8628883 -273564781 - AluSq SINE Alu -10 303 1 2052 206 57 66 chr1 8628883 8629307 -273564357 - L1ME1 LINE L1 -865 5281 4890 2194 111 0 3 chr1 8629307 8629614 -273564050 + AluSx SINE Alu 1 306 -6 2052 206 57 66 chr1 8629614 8629945 -273563719 - L1ME1 LINE L1 -1256 4890 4557 1479 220 12 30 chr1 8629943 8630347 -273563317 - L1ME1 LINE L1 -2313 3833 3437 * 938 78 117 0 chr1 8630356 8630484 -273563180 - AluSq/x SINE Alu -170 143 1 435 293 0 0 chr1 8630484 8630607 -273563057 - L1ME1 LINE L1 -2690 3456 3334 884 167 13 7 chr1 8631363 8631513 -273562151 + FRAM SINE Alu 1 151 -15 2283 112 0 0 chr1 8631524 8631836 -273561828 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 8631933 8631972 -273561692 + (TG)n Simple_repeat Simple_repeat 1 39 0 669 232 107 28 chr1 8632058 8632275 -273561389 + MLT1G LTR MaLR 360 503 -2 1973 135 14 0 chr1 8632607 8632904 -273560760 - AluJb SINE Alu -10 302 2 4944 164 15 38 chr1 8633007 8633984 -273559680 + LTR5 LTR ERVK 1 955 -14 2226 108 7 0 chr1 8634763 8635068 -273558596 + AluSx SINE Alu 1 307 -5 1412 163 118 11 chr1 8635267 8635537 -273558127 + AluJo SINE Alu 1 299 -13 433 158 95 120 chr1 8636533 8636691 -273556973 - MER106B DNA MER1_type -10 1049 896 1459 125 103 0 chr1 8636767 8636999 -273556665 + AluSx SINE Alu 57 312 0 1773 132 28 14 chr1 8637452 8637739 -273555925 - AluSx SINE Alu -21 291 1 250 234 0 0 chr1 8638400 8638447 -273555217 - L2 LINE L2 -1 3312 3266 180 282 0 99 chr1 8638831 8638902 -273554762 - MIR SINE MIR -34 228 165 1145 95 24 0 chr1 8638922 8639090 -273554574 - AluSg/x SINE Alu -8 302 131 245 269 30 0 chr1 8639449 8639516 -273554148 - L2 LINE L2 -551 2763 2695 2108 106 10 0 chr1 8639791 8640083 -273553581 - AluSx SINE Alu -17 295 1 1960 145 7 3 chr1 8640641 8640945 -273552719 - AluJb SINE Alu -7 305 1 438 318 63 16 chr1 8641012 8641201 -273552463 + MER20B DNA MER1_type 542 739 -44 2281 101 0 0 chr1 8641533 8641840 -273551824 - AluSq SINE Alu 0 313 7 2354 198 43 19 chr1 8642013 8642553 -273551111 + MER74A LTR ERVL 6 558 0 849 144 0 34 chr1 8642560 8642706 -273550958 + FLAM_C SINE Alu 1 141 -2 2245 104 7 0 chr1 8642929 8643238 -273550426 - AluSx SINE Alu -1 311 1 1957 147 0 10 chr1 8644067 8644380 -273549284 - AluSq SINE Alu -3 310 1 996 90 0 8 chr1 8644384 8644518 -273549146 - AluSq/x SINE Alu -180 133 1 340 312 102 5 chr1 8644947 8645133 -273548531 + MIR3 SINE MIR 2 205 -3 1667 172 26 23 chr1 8646909 8647211 -273546453 - AluJo SINE Alu -9 303 1 1737 140 0 14 chr1 8647511 8647790 -273545874 + AluJb SINE Alu 1 275 -37 582 183 0 0 chr1 8647790 8647905 -273545759 + GA-rich Low_complexity Low_complexity 4 118 0 2861 146 74 40 chr1 8648047 8648279 -273545385 + MER39B LTR ERV1 1 223 -430 1723 100 4 0 chr1 8648279 8648544 -273545120 + AluSx SINE Alu 53 318 0 2861 146 74 40 chr1 8648544 8648915 -273544749 + MER39B LTR ERV1 223 626 -27 407 221 58 0 chr1 8648917 8649021 -273544643 + L2 LINE L2 1328 1437 -1877 395 266 202 45 chr1 8649056 8649368 -273544296 + L2 LINE L2 1621 1981 -1333 911 143 0 0 chr1 8650088 8650214 -273543450 + FLAM_C SINE Alu 1 126 -7 1263 184 148 42 chr1 8650654 8650830 -273542834 + MLT1A2 LTR MaLR 2 158 -216 2159 122 0 0 chr1 8650830 8651141 -273542523 + AluSx SINE Alu 1 311 -1 1263 184 148 42 chr1 8651141 8651301 -273542363 + MLT1A2 LTR MaLR 158 374 0 547 221 10 171 chr1 8651304 8651602 -273542062 + L3 LINE CR1 1313 1562 -15 631 122 0 0 chr1 8651857 8651947 -273541717 - Alu SINE Alu -9 301 212 2146 105 114 21 chr1 8651947 8652280 -273541384 + THE1B LTR MaLR 1 364 0 1564 119 0 0 chr1 8652280 8652498 -273541166 - AluSx SINE Alu -94 218 1 267 315 62 53 chr1 8653783 8654016 -273539648 - MIR SINE MIR -6 256 29 2378 68 0 0 chr1 8654514 8654807 -273538857 + AluY SINE Alu 1 293 -18 794 135 23 23 chr1 8654816 8654949 -273538715 + FLAM_C SINE Alu 1 133 0 2058 114 6 29 chr1 8655018 8655334 -273538330 - AluSx SINE Alu -3 309 1 308 276 69 9 chr1 8655346 8655462 -273538202 + MIR SINE MIR 74 196 -66 300 306 171 5 chr1 8655620 8655836 -273537828 + L2 LINE L2 1918 2169 -1145 301 294 147 54 chr1 8655899 8656103 -273537561 + L1 LINE L1 2970 3192 -2954 820 135 0 15 chr1 8656236 8656369 -273537295 + FLAM_C SINE Alu 13 143 0 2289 97 0 25 chr1 8656443 8656763 -273536901 - AluSx SINE Alu 0 312 1 308 276 69 9 chr1 8656775 8656891 -273536773 + MIR SINE MIR 74 196 -66 383 282 171 5 chr1 8657050 8657266 -273536398 + L2 LINE L2 1918 2169 -1145 746 235 41 101 chr1 8657859 8658246 -273535418 - L2 LINE L2 0 3313 2950 1955 132 0 7 chr1 8659328 8659486 -273534178 - AluSx SINE Alu -18 294 137 2401 71 0 13 chr1 8659486 8659797 -273533867 - AluY SINE Alu -4 307 1 1955 132 0 7 chr1 8659797 8659934 -273533730 - AluSx SINE Alu -175 137 1 1420 119 21 4 chr1 8659939 8660174 -273533490 - L1PA14 LINE L1 0 6161 5923 1858 149 0 10 chr1 8660507 8660815 -273532849 + AluJb SINE Alu 1 305 -7 1179 184 0 26 chr1 8660940 8661174 -273532490 - AluJb SINE Alu 0 312 85 1489 152 17 0 chr1 8661249 8661479 -273532185 - AluSx SINE Alu -78 234 1 760 203 0 0 chr1 8661480 8661608 -273532056 - AluSq/x SINE Alu -184 129 2 1052 232 0 20 chr1 8661612 8661858 -273531806 - MLT1D-int LTR MaLR -1130 241 1 734 169 0 0 chr1 8661860 8661996 -273531668 - MLT1D LTR MaLR 0 505 370 * 949 159 19 0 chr1 8661991 8662148 -273531516 + MSTD LTR MaLR 237 396 0 1796 186 0 0 chr1 8662369 8662681 -273530983 + AluJb SINE Alu 1 312 0 30 0 0 0 chr1 8663124 8663154 -273530510 + AT_rich Low_complexity Low_complexity 1 30 0 554 155 216 0 chr1 8663159 8663256 -273530408 - FLAM_C SINE Alu -24 119 2 389 241 0 0 chr1 8663480 8663563 -273530101 - L2 LINE L2 0 3272 3190 3868 197 65 117 chr1 8663656 8664979 -273528685 - MER52A LTR ERV1 0 1278 25 268 53 26 0 chr1 8664979 8665017 -273528647 + MER52A LTR ERV1 1 39 -1716 323 256 5 85 chr1 8665099 8665192 -273528472 - Charlie7 DNA MER1_type 0 2612 2542 2208 80 7 0 chr1 8665192 8665481 -273528183 - AluY SINE Alu -20 291 1 323 256 5 85 chr1 8665481 8665586 -273528078 - Charlie7 DNA MER1_type -70 2542 2430 1279 157 59 77 chr1 8665820 8666133 -273527531 - AluJo SINE Alu 0 308 1 450 359 69 7 chr1 8666226 8666530 -273527134 + L2 LINE L2 2632 2954 -360 239 231 19 0 chr1 8666629 8666681 -273526983 + L2 LINE L2 3247 3299 -14 250 288 113 38 chr1 8666686 8666846 -273526818 + L2 LINE L2 2233 2404 -910 1034 165 54 66 chr1 8667345 8667587 -273526077 - L1MC3 LINE L1 -1152 6633 6395 577 295 43 5 chr1 8667668 8667875 -273525789 - MIR SINE MIR -28 234 20 2180 149 30 25 chr1 8668311 8668673 -273524991 - THE1B LTR MaLR 0 364 1 1085 224 19 0 chr1 8668785 8668990 -273524674 - AluJb SINE Alu -19 293 85 424 213 4 107 chr1 8668990 8669102 -273524562 - AluSg/x SINE Alu -62 248 171 322 243 0 0 chr1 8669067 8669141 -273524523 - L2 LINE L2 -46 3267 3194 * 2557 77 0 3 chr1 8669163 8669474 -273524190 + AluY SINE Alu 1 310 -1 454 267 82 0 chr1 8673538 8673684 -273519980 + MIR SINE MIR 84 241 -21 182 339 25 16 chr1 8673950 8674071 -273519593 + MIR SINE MIR 109 230 -32 654 186 16 31 chr1 8674879 8675008 -273518656 + AluSq/x SINE Alu 1 127 -185 248 233 26 9 chr1 8675008 8675124 -273518540 + (TG)n Simple_repeat Simple_repeat 1 118 0 300 299 35 11 chr1 8675144 8675231 -273518433 + L1MC4 LINE L1 6615 6703 -1339 414 173 18 9 chr1 8675231 8675341 -273518323 + (TG)n Simple_repeat Simple_repeat 1 111 0 241 146 0 0 chr1 8675571 8675612 -273518052 + LTR54 LTR ERV1 402 442 -68 181 252 57 65 chr1 8676054 8676177 -273517487 - L2 LINE L2 -2858 456 335 2558 60 0 3 chr1 8676328 8676626 -273517038 - AluSq SINE Alu -16 297 1 424 132 0 15 chr1 8676652 8676720 -273516944 + AluS SINE Alu 2 68 -250 405 255 100 89 chr1 8676822 8677093 -273516571 + L1MC5 LINE L1 7492 7765 -196 221 94 75 0 chr1 8677095 8677148 -273516516 + (TA)n Simple_repeat Simple_repeat 2 58 0 1949 166 0 3 chr1 8677149 8677445 -273516219 - AluJb SINE Alu -17 295 1 6689 45 40 11 chr1 8677575 8678447 -273515217 + MER11D LTR ERVK 1 897 0 1056 149 18 0 chr1 8678525 8678693 -273514971 - AluJb SINE Alu -5 307 137 451 322 47 0 chr1 8679038 8679187 -273514477 - L1ME LINE L1 -359 5762 5607 2192 107 24 3 chr1 8679283 8679574 -273514090 - AluSx SINE Alu -15 297 1 1704 138 99 18 chr1 8680211 8680494 -273513170 - AluJo SINE Alu -6 306 1 297 115 0 167 chr1 8682452 8682626 -273511038 + (CCCCG)n Simple_repeat Simple_repeat 2 146 0 1683 152 38 3 chr1 8682840 8683130 -273510534 + AluSg SINE Alu 2 301 -9 2930 98 33 15 chr1 8683253 8683710 -273509954 - MER4C LTR ERV1 0 465 1 1871 151 11 0 chr1 8683793 8684077 -273509587 + AluJo SINE Alu 22 308 -4 770 83 9 0 chr1 8684094 8684203 -273509461 + MER83 LTR ERV1 1 110 -338 1651 164 78 55 chr1 8684206 8684589 -273509075 + MER83 LTR ERV1 56 447 -1 2418 95 0 0 chr1 8684696 8684990 -273508674 - AluSq SINE Alu -18 295 2 2384 98 0 0 chr1 8684991 8685286 -273508378 - AluSx SINE Alu -17 295 1 877 145 7 0 chr1 8685674 8685812 -273507852 - LTR23 LTR ERV1 0 437 299 2037 71 12 0 chr1 8685817 8686069 -273507595 - AluSq SINE Alu -10 303 49 1850 171 3 0 chr1 8686170 8686462 -273507202 + AluJb SINE Alu 18 310 -2 1958 94 36 50 chr1 8686496 8686773 -273506891 + AluSq SINE Alu 3 275 -38 467 146 0 11 chr1 8686773 8686862 -273506802 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 3831 132 18 3 chr1 8686876 8687488 -273506176 - MER41B LTR ERV1 -14 621 1 922 133 0 0 chr1 8687488 8687631 -273506033 + L1PB2 LINE L1 6001 6143 -8 1190 185 93 0 chr1 8687643 8687902 -273505762 - LTR23 LTR ERV1 -154 283 1 2226 115 10 13 chr1 8688505 8688818 -273504846 - AluSx SINE Alu 0 312 1 4239 154 15 50 chr1 8688833 8689690 -273503974 - L1MB2 LINE L1 -17 6154 5328 510 111 0 0 chr1 8689782 8689863 -273503801 + LTR24C LTR ERV1 1 81 -554 411 54 0 0 chr1 8689910 8689966 -273503698 + LTR24C LTR ERV1 580 635 0 3599 147 26 36 chr1 8689973 8689993 -273503671 + L1MB5 LINE L1 5117 5136 -1038 1512 187 6 78 chr1 8689993 8690325 -273503339 + AluJb SINE Alu 5 312 0 3599 147 26 36 chr1 8690325 8690392 -273503272 + L1MB5 LINE L1 5136 5202 -972 596 202 73 0 chr1 8690392 8690516 -273503148 + FLAM_A SINE Alu 1 133 0 3599 147 26 36 chr1 8690516 8690831 -273502833 + L1MB5 LINE L1 5202 5519 -655 2049 163 0 0 chr1 8690831 8691131 -273502533 + AluSx SINE Alu 1 300 -12 3599 147 26 36 chr1 8691131 8691464 -273502200 + L1MB5 LINE L1 5519 5839 -335 757 183 0 0 chr1 8691464 8691595 -273502069 + FLAM_A SINE Alu 1 131 -2 3599 147 26 36 chr1 8691595 8691732 -273501932 + L1MB5 LINE L1 5839 5976 -198 754 194 127 18 chr1 8691886 8692117 -273501547 + L1MB5 LINE L1 5920 6174 0 232 179 0 0 chr1 8692127 8692166 -273501498 + Alu SINE Alu 250 288 -13 449 265 60 13 chr1 8692170 8692321 -273501343 - LTR37A LTR ERV1 -268 158 1 3057 116 27 51 chr1 8692431 8692572 -273501092 + MER41E LTR ERV1 1 144 -368 2246 117 0 7 chr1 8692572 8692879 -273500785 + AluSq SINE Alu 2 306 -7 3057 116 27 51 chr1 8692879 8692893 -273500771 + MER41E LTR ERV1 144 157 -355 2540 40 10 3 chr1 8692893 8693194 -273500470 + AluY SINE Alu 1 303 -8 3057 116 27 51 chr1 8693194 8693562 -273500102 + MER41E LTR ERV1 157 512 0 379 279 184 14 chr1 8693816 8693963 -273499701 + MER5A DNA MER1_type 18 189 0 2491 130 46 35 chr1 8694174 8694767 -273498897 - MER4E LTR ERV1 0 766 5 1209 136 45 112 chr1 8695232 8695406 -273498258 - LTR8A LTR ERV1 0 727 578 2168 150 0 6 chr1 8695406 8695720 -273497944 - AluSx SINE Alu 0 312 1 1209 136 45 112 chr1 8695720 8695829 -273497835 - LTR8A LTR ERV1 -149 578 463 1117 185 60 14 chr1 8695829 8696119 -273497545 + LTR19A LTR ERV1 1 357 -129 600 169 0 0 chr1 8696219 8696343 -273497321 + LTR19A-int LTR ERV1 1059 1182 -4404 46057 92 9 9 chr1 8696407 8696452 -273497212 + LTR19A-int LTR ERV1 1178 1222 -6497 2308 79 0 4 chr1 8696452 8696758 -273496906 + AluY SINE Alu 3 307 0 46057 92 9 9 chr1 8696758 8702285 -273491379 + LTR19A-int LTR ERV1 1222 6749 -970 2214 87 14 3 chr1 8702285 8702574 -273491090 + AluSp SINE Alu 5 296 -17 46057 92 9 9 chr1 8702574 8703545 -273490119 + LTR19A-int LTR ERV1 6749 7719 0 1875 151 158 28 chr1 8703545 8703975 -273489689 + LTR19A LTR ERV1 1 486 0 2261 150 57 50 chr1 8703975 8704435 -273489229 - LTR8A LTR ERV1 -264 463 1 2175 154 0 0 chr1 8704538 8704850 -273488814 + AluSx SINE Alu 1 312 0 225 114 29 0 chr1 8704860 8704895 -273488769 + U2 snRNA snRNA 3 38 -150 985 257 62 48 chr1 8705016 8705335 -273488329 + MER110A LTR ERV1 41 354 -114 2323 112 0 16 chr1 8705335 8705648 -273488016 + AluSg SINE Alu 1 308 -2 985 257 62 48 chr1 8705648 8705688 -273487976 + MER110A LTR ERV1 354 392 -76 3850 114 68 49 chr1 8705688 8706366 -273487298 + LTR8 LTR ERV1 1 691 0 985 257 62 48 chr1 8706366 8706425 -273487239 + MER110A LTR ERV1 392 466 -2 265 229 16 0 chr1 8706431 8706492 -273487172 + MER45 DNA AcHobo 1 62 -978 188 250 0 0 chr1 8706505 8706545 -273487119 + MIR SINE MIR 221 260 -2 627 130 52 0 chr1 8707363 8707478 -273486186 - AluSg/x SINE Alu -3 309 189 367 102 0 0 chr1 8707886 8707935 -273485729 + LTR8 LTR ERV1 643 691 0 184 256 47 0 chr1 8707981 8708024 -273485640 + MER5A DNA MER1_type 106 150 -39 28 0 0 0 chr1 8708275 8708303 -273485361 + AT_rich Low_complexity Low_complexity 1 28 0 1084 156 67 45 chr1 8708774 8708998 -273484666 + AluJb SINE Alu 79 307 -5 2219 112 0 26 chr1 8709017 8709321 -273484343 - AluSx SINE Alu -16 296 1 2235 110 7 10 chr1 8710093 8710401 -273483263 + AluSx SINE Alu 1 307 -5 997 147 13 6 chr1 8710879 8711036 -273482628 - AluJo/FRAM SINE Alu -11 301 144 251 154 0 19 chr1 8711038 8711090 -273482574 + Alu SINE Alu 252 302 0 2279 112 0 0 chr1 8711136 8711430 -273482234 - AluSq SINE Alu -19 294 1 2136 104 4 0 chr1 8712685 8712964 -273480700 + AluSx SINE Alu 1 280 -32 417 123 0 0 chr1 8713001 8713066 -273480598 + (CA)n Simple_repeat Simple_repeat 2 66 0 669 245 55 19 chr1 8713770 8714027 -273479637 + L2 LINE L2 2250 2515 -799 845 114 0 53 chr1 8714035 8714166 -273479498 - FLAM_C SINE Alu -14 129 6 410 273 140 49 chr1 8714169 8714649 -273479015 + L2 LINE L2 2520 3064 -249 2152 113 7 0 chr1 8714649 8714965 -273478699 + AluSx SINE Alu 1 318 0 410 273 140 49 chr1 8714965 8715123 -273478541 + L2 LINE L2 3064 3206 -107 958 166 0 0 chr1 8715324 8715469 -273478195 + AluJo SINE Alu 1 145 -167 1816 142 13 43 chr1 8715470 8715614 -273478050 + AluSx SINE Alu 1 133 -179 1934 149 7 10 chr1 8715614 8715910 -273477754 + AluSx SINE Alu 4 298 -14 1816 142 13 43 chr1 8715910 8716068 -273477596 + AluSx SINE Alu 133 294 -18 207 0 0 0 chr1 8716225 8716248 -273477416 + (TCC)n Simple_repeat Simple_repeat 1 23 0 698 134 188 54 chr1 8716614 8716763 -273476901 - AluJo/FRAM SINE Alu -10 302 134 2260 71 39 0 chr1 8716763 8717043 -273476621 - AluY SINE Alu -20 291 1 2436 99 0 0 chr1 8717047 8717350 -273476314 - AluSx SINE Alu -9 303 1 2065 153 0 7 chr1 8717354 8717662 -273476002 - AluSx SINE Alu -6 306 1 201 293 116 80 chr1 8717984 8718209 -273475455 + L2 LINE L2 3034 3266 -6 2397 107 0 0 chr1 8718209 8718519 -273475145 + AluSx SINE Alu 1 310 -2 248 321 76 23 chr1 8718975 8719106 -273474558 + MIR SINE MIR 103 240 -22 1760 116 0 0 chr1 8719730 8719955 -273473709 + AluSg/x SINE Alu 73 297 -13 500 309 15 13 chr1 8720139 8720407 -273473257 - MER115 DNA AcHobo -339 354 25 2419 92 0 0 chr1 8720427 8720721 -273472943 - AluSx SINE Alu -18 294 1 335 296 165 24 chr1 8720889 8721095 -273472569 + MIR SINE MIR 7 241 -21 2324 96 3 0 chr1 8721630 8721921 -273471743 + AluSx SINE Alu 1 292 -20 396 0 0 0 chr1 8721925 8721969 -273471695 + (CA)n Simple_repeat Simple_repeat 2 45 0 2039 117 10 29 chr1 8722007 8722314 -273471350 + AluSx SINE Alu 1 301 -11 1391 115 0 0 chr1 8722737 8722919 -273470745 + AluSg/x SINE Alu 129 310 0 1653 177 71 159 chr1 8723123 8723756 -273469908 + MER63C DNA MER1_type 1 531 -529 947 205 91 24 chr1 8723756 8723966 -273469698 + MER58A DNA MER1_type 1 224 0 1653 177 71 159 chr1 8723966 8724243 -273469421 + MER63C DNA MER1_type 531 831 -99 214 98 39 0 chr1 8724243 8724294 -273469370 + (TA)n Simple_repeat Simple_repeat 2 54 0 344 207 135 0 chr1 8724294 8724405 -273469259 + MER63 DNA MER1_type 801 926 -135 1794 77 65 35 chr1 8724410 8724671 -273468993 + AluSg SINE Alu 26 294 -16 1698 206 3 0 chr1 8724674 8724966 -273468698 - AluJo SINE Alu -19 293 1 403 162 15 0 chr1 8725000 8725068 -273468596 - FRAM/FAM SINE Alu -108 68 1 447 206 98 0 chr1 8725074 8725176 -273468488 + MER63 DNA MER1_type 946 1057 -3 2326 79 3 7 chr1 8725403 8725694 -273467970 + AluSx SINE Alu 1 290 -22 212 75 0 25 chr1 8725697 8725737 -273467927 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 236 259 19 0 chr1 8725834 8725888 -273467776 + L3 LINE CR1 880 934 -643 1174 202 82 32 chr1 8726504 8726679 -273466985 + MLT1B LTR MaLR 2 167 -223 1826 116 33 14 chr1 8726679 8726955 -273466709 + AluJb SINE Alu 1 281 -31 * 2283 113 0 3 chr1 8726954 8727256 -273466408 - AluSx SINE Alu -11 301 1 1174 202 82 32 chr1 8727256 8727500 -273466164 + MLT1B LTR MaLR 468 373 -17 2122 99 11 3 chr1 8728974 8729278 -273464386 + AluSx SINE Alu 1 306 0 2157 123 0 10 chr1 8729278 8729586 -273464078 + AluSx SINE Alu 1 305 -7 1460 219 26 6 chr1 8730371 8730718 -273462946 + L1MC4 LINE L1 7280 7633 -409 958 170 0 6 chr1 8730818 8730977 -273462687 - AluSq SINE Alu -19 294 137 1285 170 208 0 chr1 8731096 8731523 -273462141 + Charlie1b DNA MER1_type 6 523 0 2175 95 63 0 chr1 8731729 8732014 -273461650 + AluSq SINE Alu 1 303 -10 241 202 228 70 chr1 8732717 8732788 -273460876 + MER112 DNA MER1_type 8 66 -194 348 24 0 0 chr1 8732788 8732829 -273460835 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 202 228 70 chr1 8732829 8732871 -273460793 + MER112 DNA MER1_type 66 139 -121 198 91 0 0 chr1 8732882 8732915 -273460749 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1793 137 128 18 chr1 8732927 8733097 -273460567 + THE1C LTR MaLR 2 152 -223 198 0 0 0 chr1 8733097 8733119 -273460545 + (TC)n Simple_repeat Simple_repeat 1 22 0 1793 137 128 18 chr1 8733119 8733285 -273460379 + THE1C LTR MaLR 152 375 0 523 124 165 10 chr1 8733285 8733382 -273460282 - AluJb SINE Alu -200 112 1 291 207 81 58 chr1 8733382 8733469 -273460195 + MER112 DNA MER1_type 167 255 -5 423 200 161 141 chr1 8734198 8734349 -273459315 + L1M4 LINE L1 3670 3817 -2329 1997 105 14 18 chr1 8734349 8734662 -273459002 + AluSx SINE Alu 1 312 0 423 200 161 141 chr1 8734662 8734775 -273458889 + L1M4 LINE L1 3817 3926 -2220 1979 156 17 3 chr1 8734775 8735077 -273458587 - AluSx SINE Alu -6 306 1 423 200 161 141 chr1 8735077 8735215 -273458449 + L1M4 LINE L1 3926 4082 -2064 248 235 202 45 chr1 8735219 8735466 -273458198 + L1MEd LINE L1 586 871 -5248 1728 211 7 45 chr1 8735474 8735563 -273458101 + L1M4 LINE L1 4709 4800 -1346 1830 104 94 14 chr1 8735563 8735850 -273457814 + AluSx SINE Alu 1 310 -2 1728 211 7 45 chr1 8735850 8735976 -273457688 + L1M4 LINE L1 4800 4929 -1217 1696 174 9 25 chr1 8735976 8736110 -273457554 + AluJo SINE Alu 1 136 -176 1993 142 0 32 chr1 8736110 8736426 -273457238 + AluSx SINE Alu 1 306 -6 1696 174 9 25 chr1 8736426 8736608 -273457056 + AluJo SINE Alu 136 312 0 1728 211 7 45 chr1 8736608 8736836 -273456828 + L1M4 LINE L1 4929 5136 -1010 502 298 35 67 chr1 8736844 8737126 -273456538 + L1MEd LINE L1 2253 2525 -3604 369 162 10 30 chr1 8737301 8737400 -273456264 + GA-rich Low_complexity Low_complexity 2 98 0 5519 141 72 15 chr1 8737400 8738125 -273455539 + L1MC1 LINE L1 5114 5929 -404 2289 82 0 13 chr1 8738125 8738430 -273455234 + AluSc SINE Alu 1 301 -8 5519 141 72 15 chr1 8738430 8738855 -273454809 + L1MC1 LINE L1 5929 6328 -5 686 179 42 2 chr1 8738861 8739098 -273454566 + AluJ SINE Alu 2 290 -22 27 0 0 0 chr1 8739118 8739145 -273454519 + AT_rich Low_complexity Low_complexity 1 27 0 350 222 56 58 chr1 8739164 8739312 -273454352 + L1MCa LINE L1 1941 2064 -4362 425 67 67 0 chr1 8739313 8739417 -273454247 + (TA)n Simple_repeat Simple_repeat 2 112 0 302 279 29 44 chr1 8739421 8739557 -273454107 + L1MCa LINE L1 1931 2064 -4362 200 59 29 0 chr1 8739558 8739592 -273454072 + (TA)n Simple_repeat Simple_repeat 2 36 0 306 197 61 0 chr1 8739772 8739838 -273453826 + L1MCa LINE L1 1995 2064 -4362 * 375 285 30 17 chr1 8739785 8739945 -273453719 - L1MC4 LINE L1 -1340 6982 1906 268 43 43 0 chr1 8739946 8739992 -273453672 + (TA)n Simple_repeat Simple_repeat 2 49 0 2350 120 0 0 chr1 8740002 8740310 -273453354 + AluSx SINE Alu 1 308 -4 434 202 141 46 chr1 8740321 8740667 -273452997 + L1MEd LINE L1 844 1250 -4869 554 310 35 4 chr1 8740695 8740924 -273452740 + L1M4 LINE L1 4460 4695 -1451 1877 170 3 0 chr1 8741053 8741335 -273452329 + AluJo SINE Alu 1 283 -29 652 266 144 9 chr1 8741501 8741646 -273452018 + MIR SINE MIR 3 127 -135 2362 102 0 3 chr1 8741646 8741950 -273451714 + AluSg SINE Alu 1 303 -7 652 266 144 9 chr1 8741950 8742033 -273451631 + MIR SINE MIR 127 262 0 1960 148 7 7 chr1 8742044 8742347 -273451317 + AluSx SINE Alu 1 303 -9 2374 89 3 0 chr1 8742592 8742895 -273450769 - AluSq SINE Alu -9 304 1 218 230 71 95 chr1 8742949 8743075 -273450589 + MIR3 SINE MIR 82 204 -4 2242 121 20 0 chr1 8743418 8743724 -273449940 + AluSx SINE Alu 1 312 0 950 176 78 5 chr1 8744815 8745019 -273448645 - MER20 DNA MER1_type 0 219 1 308 262 85 32 chr1 8745261 8745424 -273448240 + MIR SINE MIR 15 187 -62 2585 52 10 7 chr1 8745541 8745849 -273447815 - AluY SINE Alu -2 309 1 1982 134 33 16 chr1 8745943 8746248 -273447416 - AluJo SINE Alu -2 310 1 880 106 29 39 chr1 8746400 8746800 -273446864 + (CA)n Simple_repeat Simple_repeat 1 396 0 556 134 43 12 chr1 8746853 8747107 -273446557 + (CA)n Simple_repeat Simple_repeat 1 262 0 464 145 120 51 chr1 8747225 8747342 -273446322 - L2 LINE L2 0 3313 3189 1963 163 10 3 chr1 8747419 8747726 -273445938 + AluJb SINE Alu 3 311 -1 1914 158 3 23 chr1 8747736 8748039 -273445625 + AluJo SINE Alu 3 299 -13 318 264 32 8 chr1 8748757 8748882 -273444782 - L2 LINE L2 -292 2980 2853 2132 123 0 0 chr1 8749008 8749317 -273444347 + AluSx SINE Alu 1 309 0 246 160 0 0 chr1 8749475 8749525 -273444139 + L1M4 LINE L1 5408 5457 -727 508 68 55 0 chr1 8749542 8749615 -273444049 - L1MA8 LINE L1 -341 5950 5874 1101 173 19 39 chr1 8749699 8749776 -273443888 - AluJo SINE Alu -103 209 132 2296 112 3 10 chr1 8749776 8750090 -273443574 - AluSx SINE Alu 0 312 1 2813 19 0 3 chr1 8750091 8750403 -273443261 - AluY SINE Alu 0 311 1 1101 173 19 39 chr1 8750403 8750531 -273443133 - AluJo SINE Alu -179 133 6 184 364 11 0 chr1 8750670 8750758 -273442906 - L2 LINE L2 -785 2529 2441 969 201 91 80 chr1 8750961 8751177 -273442487 + LTR56 LTR ERV1 9 221 -216 2385 83 0 13 chr1 8751177 8751478 -273442186 + AluSg SINE Alu 1 297 -13 969 201 91 80 chr1 8751478 8751708 -273441956 + LTR56 LTR ERV1 221 437 0 391 186 145 40 chr1 8751998 8752122 -273441542 + MIR SINE MIR 14 150 -112 681 107 34 6 chr1 8752123 8752359 -273441305 + AluJ SINE Alu 1 292 -20 259 284 54 0 chr1 8752388 8752462 -273441202 + MIR SINE MIR 180 257 -5 198 254 45 15 chr1 8752492 8752559 -273441105 - MIR SINE MIR -131 131 63 1739 169 3 23 chr1 8752638 8752940 -273440724 - AluJb SINE Alu -16 296 1 1883 170 10 6 chr1 8753104 8753415 -273440249 + AluJo SINE Alu 1 312 0 573 211 59 0 chr1 8754123 8754275 -273439389 + MER20 DNA MER1_type 56 216 -3 2477 86 0 0 chr1 8754313 8754614 -273439050 + AluSx SINE Alu 1 301 -11 834 232 75 46 chr1 8754640 8754854 -273438810 - MIR SINE MIR -10 252 29 2201 83 0 0 chr1 8754854 8755118 -273438546 - AluSq SINE Alu -11 302 39 834 232 75 46 chr1 8755118 8755144 -273438520 - MIR SINE MIR -233 29 5 2509 81 7 0 chr1 8756477 8756785 -273436879 - AluSq SINE Alu -3 310 1 2166 94 0 0 chr1 8757532 8757808 -273435856 + AluSx SINE Alu 1 276 -36 389 279 85 0 chr1 8758287 8758452 -273435212 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 618 124 171 0 chr1 8758708 8758813 -273434851 + FRAM SINE Alu 46 168 -8 221 302 93 35 chr1 8758873 8759045 -273434619 - L2 LINE L2 -665 2649 2468 2129 116 19 41 chr1 8759078 8759396 -273434268 + AluSx SINE Alu 1 311 -1 581 272 241 18 chr1 8759662 8760044 -273433620 + MLT1J LTR MaLR 43 509 -2 3532 176 48 38 chr1 8760626 8761003 -273432661 - L1MB7 LINE L1 -1 6183 5811 2152 107 3 10 chr1 8761003 8761303 -273432361 - AluSx SINE Alu -13 299 2 3532 176 48 38 chr1 8761303 8761598 -273432066 - L1MB7 LINE L1 -373 5811 5498 1351 145 123 45 chr1 8761598 8761747 -273431917 - AluJo SINE Alu -22 290 154 2411 93 0 0 chr1 8761747 8762047 -273431617 - AluSq SINE Alu -11 302 3 1351 145 123 45 chr1 8762047 8762166 -273431498 - AluJo SINE Alu -158 154 1 3532 176 48 38 chr1 8762166 8762339 -273431325 - L1MB7 LINE L1 -686 5498 5328 285 128 0 0 chr1 8762339 8762386 -273431278 + (TC)n Simple_repeat Simple_repeat 2 48 0 2232 125 3 0 chr1 8762394 8762699 -273430965 - AluSx SINE Alu -6 306 1 1206 198 24 10 chr1 8762699 8762988 -273430676 - L1MB7 LINE L1 -809 5337 5042 1019 221 36 50 chr1 8762974 8763064 -273430600 - L1MB7 LINE L1 -1346 4800 4710 * 2040 140 7 0 chr1 8763064 8763357 -273430307 - AluSx SINE Alu -13 299 5 1019 221 36 50 chr1 8763357 8763624 -273430040 - L1MB7 LINE L1 -1436 4710 4448 686 169 46 23 chr1 8763699 8763829 -273429835 + AluJo/FLAM SINE Alu 1 133 -169 2177 110 16 7 chr1 8763829 8764139 -273429525 + AluSq SINE Alu 1 313 0 388 288 137 36 chr1 8764151 8764290 -273429374 - L1ME3A LINE L1 -23 6147 5995 555 169 0 0 chr1 8764313 8764402 -273429262 - FLAM_A SINE Alu -46 96 8 907 208 11 60 chr1 8764457 8764722 -273428942 - L1ME3A LINE L1 -224 5946 5695 23 0 0 0 chr1 8765210 8765233 -273428431 + AT_rich Low_complexity Low_complexity 1 23 0 2284 94 3 7 chr1 8765753 8766052 -273427612 + AluY SINE Alu 3 300 -11 6798 116 3 8 chr1 8766056 8767056 -273426608 + HERVFH19I LTR ERV1 1210 2204 -5515 2182 74 0 0 chr1 8767160 8767417 -273426247 - AluY SINE Alu -54 257 1 2610 121 36 5 chr1 8767443 8767832 -273425832 + HERVFH19I LTR ERV1 1 401 -7318 * 2877 137 11 4 chr1 8767825 8768292 -273425372 + HERVFH19I LTR ERV1 702 1171 -4415 824 114 14 2 chr1 8768677 8768900 -273424764 + AluJ SINE Alu 29 300 -12 294 202 83 89 chr1 8769198 8769382 -273424282 + MLT1C LTR MaLR 103 268 -199 2037 106 24 3 chr1 8769426 8769719 -273423945 + AluSx SINE Alu 1 299 -13 1706 161 4 4 chr1 8770024 8770304 -273423360 - AluJb SINE Alu -18 294 15 1957 114 19 62 chr1 8770831 8771156 -273422508 - AluSx SINE Alu -1 311 1 183 337 101 6 chr1 8771189 8771358 -273422306 + L2 LINE L2 2468 2652 -662 629 123 170 0 chr1 8771421 8771527 -273422137 - FRAM SINE Alu -7 169 46 1366 113 10 0 chr1 8772872 8773076 -273420588 + MLT2A2 LTR ERVL 1 206 -247 832 116 68 27 chr1 8773077 8773223 -273420441 + AluSq/x SINE Alu 1 152 -161 351 153 0 0 chr1 8773224 8773283 -273420381 + Alu SINE Alu 241 299 -2 * 1817 81 18 56 chr1 8773265 8773464 -273420200 + MLT2A2 LTR ERVL 181 386 -67 2161 86 30 7 chr1 8773464 8773765 -273419899 + AluY SINE Alu 1 308 -3 1817 81 18 56 chr1 8773765 8773785 -273419879 + MLT2A2 LTR ERVL 386 405 -48 1909 147 3 3 chr1 8773785 8774085 -273419579 + AluSx SINE Alu 1 300 -12 1817 81 18 56 chr1 8774085 8774148 -273419516 + MLT2A2 LTR ERVL 405 453 0 1839 157 10 13 chr1 8774819 8774997 -273418667 - AluJb SINE Alu 0 312 134 2232 96 0 7 chr1 8774997 8775299 -273418365 - AluSq SINE Alu -13 300 1 1839 157 10 13 chr1 8775299 8775433 -273418231 - AluJb SINE Alu -178 134 1 2123 192 47 5 chr1 8775713 8776141 -273417523 + L1MB4 LINE L1 5696 6141 -39 248 189 0 0 chr1 8776141 8776178 -273417486 + Alu SINE Alu 1 37 -265 604 124 0 0 chr1 8776178 8776267 -273417397 - AluSg/x SINE Alu -9 301 213 1048 113 38 6 chr1 8776273 8776433 -273417231 - AluSq SINE Alu -148 165 1 279 277 64 14 chr1 8776445 8776586 -273417078 + L2 LINE L2 2700 2847 -467 233 211 197 0 chr1 8776590 8776661 -273417003 - MLT1E2 LTR MaLR -368 258 174 980 153 13 0 chr1 8776677 8776834 -273416830 - FRAM SINE Alu -1 175 17 1550 164 54 0 chr1 8777059 8777339 -273416325 + AluJb SINE Alu 1 295 -17 1769 101 4 4 chr1 8777395 8777642 -273416022 - AluSq SINE Alu -66 247 1 22 56 0 0 chr1 8778082 8778118 -273415546 + AT_rich Low_complexity Low_complexity 1 36 0 611 214 29 46 chr1 8778130 8778303 -273415361 + L1MD2 LINE L1 6180 6349 -10 * 1361 168 51 9 chr1 8778279 8778580 -273415084 + L1MD3 LINE L1 7600 7994 -1 2511 51 3 6 chr1 8778782 8779094 -273414570 + AluSq SINE Alu 3 313 0 1310 119 0 10 chr1 8779696 8779890 -273413774 - AluSx SINE Alu -57 255 64 1650 125 33 22 chr1 8779898 8780170 -273413494 - AluSx SINE Alu -23 289 15 1833 139 14 7 chr1 8780656 8780950 -273412714 - AluJb SINE Alu -16 296 1 790 138 69 0 chr1 8780954 8781097 -273412567 - MLT1B LTR MaLR -215 175 23 337 189 0 0 chr1 8781097 8781150 -273412514 + Alu SINE Alu 1 53 -249 * 361 65 0 0 chr1 8781145 8781191 -273412473 + FLAM SINE Alu 81 126 -7 2434 80 0 0 chr1 8781204 8781515 -273412149 + AluSx SINE Alu 1 311 -1 199 342 17 42 chr1 8781731 8781851 -273411813 + L3b LINE CR1 1218 1334 -249 201 138 0 0 chr1 8782171 8782200 -273411464 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 832 171 0 11 chr1 8782202 8782383 -273411281 + GA-rich Low_complexity Low_complexity 1 179 0 1742 131 26 35 chr1 8782385 8782698 -273410966 + AluSx SINE Alu 1 310 -2 547 190 107 133 chr1 8782978 8783325 -273410339 - Charlie4a DNA MER1_type -19 489 152 952 139 0 0 chr1 8783352 8783523 -273410141 + FRAM SINE Alu 2 172 0 653 171 8 0 chr1 8784491 8784614 -273409050 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 8784615 8784650 -273409014 + AT_rich Low_complexity Low_complexity 1 35 0 1327 155 5 0 chr1 8784656 8784869 -273408795 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 8785052 8785341 -273408323 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 8786118 8786152 -273407512 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 8786251 8786444 -273407220 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 8786546 8786853 -273406811 + AluSq SINE Alu 1 299 -14 265 298 46 53 chr1 8788052 8788183 -273405481 + MER5A DNA MER1_type 46 175 -14 1948 109 30 46 chr1 8788260 8788562 -273405102 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 8788975 8789116 -273404548 + FLAM_C SINE Alu 1 141 -2 1591 204 31 28 chr1 8789156 8789544 -273404120 + MLT2C1 LTR ERVL 1 389 -8 673 141 0 113 chr1 8789752 8789894 -273403770 - AluJo SINE Alu -178 134 9 1406 131 49 16 chr1 8789898 8790143 -273403521 - AluJo SINE Alu -18 294 42 496 306 153 0 chr1 8790558 8790774 -273402890 - MIR SINE MIR 0 262 14 2195 100 0 0 chr1 8792349 8792639 -273401025 - AluY SINE Alu -21 290 1 203 322 17 0 chr1 8792831 8792890 -273400774 - L2 LINE L2 -10 3303 3244 2218 103 3 0 chr1 8793285 8793586 -273400078 + AluSx SINE Alu 3 304 -8 895 132 0 0 chr1 8794178 8794314 -273399350 - AluJb SINE Alu -176 136 1 240 111 0 0 chr1 8794340 8794376 -273399288 + (CA)n Simple_repeat Simple_repeat 2 37 0 1735 156 30 7 chr1 8794472 8794767 -273398897 - AluJo SINE Alu -10 302 1 2022 85 26 29 chr1 8795222 8795528 -273398136 - AluSg SINE Alu -5 305 1 2186 91 13 3 chr1 8795540 8795849 -273397815 - AluSx SINE Alu 0 312 1 1506 162 0 81 chr1 8796575 8796722 -273396942 + AluJb SINE Alu 1 108 -204 2233 103 0 3 chr1 8796722 8797023 -273396641 + AluSx SINE Alu 2 301 -11 1506 162 0 81 chr1 8797023 8797208 -273396456 + AluJb SINE Alu 108 306 -6 224 209 0 0 chr1 8799624 8799667 -273393997 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 8799702 8799795 -273393869 - L2 LINE L2 -338 2976 2873 297 322 68 1 chr1 8800067 8800213 -273393451 + MIR SINE MIR 18 169 -67 1971 148 0 0 chr1 8800441 8800739 -273392925 - AluJo SINE Alu -14 298 1 2170 92 7 13 chr1 8801567 8801872 -273391792 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 8802091 8802207 -273391457 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 8802207 8802339 -273391325 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 8802339 8802438 -273391226 - MER2 DNA MER2_type -111 234 123 2163 92 3 0 chr1 8802439 8802733 -273390931 + AluSq SINE Alu 1 295 -18 774 134 84 0 chr1 8802735 8802854 -273390810 + AluSg/x SINE Alu 145 273 -39 590 215 25 0 chr1 8802861 8802982 -273390682 - MER2 DNA MER2_type -220 125 2 1378 122 22 17 chr1 8803502 8803732 -273389932 - AluJb SINE Alu 0 312 82 2104 131 0 0 chr1 8803833 8804131 -273389533 + AluSx SINE Alu 1 298 -14 454 183 0 24 chr1 8804131 8804207 -273389457 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 8804427 8804675 -273388989 - MIR SINE MIR -3 259 8 2789 199 46 33 chr1 8804768 8805350 -273388314 - MLT1E LTR MaLR -3 590 1 221 0 0 33 chr1 8806218 8806248 -273387416 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1058 162 5 79 chr1 8806787 8806948 -273386716 - MER20 DNA MER1_type -4 215 72 2220 119 0 0 chr1 8806948 8807251 -273386413 - AluSx SINE Alu -9 303 1 1058 162 5 79 chr1 8807251 8807305 -273386359 - MER20 DNA MER1_type -147 72 16 907 83 15 8 chr1 8808010 8808142 -273385522 - AluSp SINE Alu -180 133 1 255 125 0 0 chr1 8809549 8809589 -273384075 + (T)n Simple_repeat Simple_repeat 1 40 0 638 281 50 15 chr1 8810574 8810657 -273383007 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 8810657 8810782 -273382882 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 8810782 8810806 -273382858 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 8810806 8810980 -273382684 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 8810980 8811095 -273382569 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 8811135 8811257 -273382407 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 8811300 8811381 -273382283 - MLT1L LTR MaLR -534 81 1 355 358 0 0 chr1 8811452 8811547 -273382117 + L1MC4 LINE L1 6614 6708 -1334 2114 112 3 3 chr1 8811568 8811864 -273381800 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 8811981 8812007 -273381657 + (T)n Simple_repeat Simple_repeat 1 26 0 2098 97 16 10 chr1 8812533 8812842 -273380822 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 8813083 8813411 -273380253 - AluSq SINE Alu 0 323 1 1362 179 80 7 chr1 8813413 8813687 -273379977 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 8814867 8815181 -273378483 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 8816601 8816660 -273377004 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 8816666 8816812 -273376852 - AluJo/FRAM SINE Alu -11 301 144 2096 120 3 0 chr1 9017360 9017660 -273176004 + AluSq SINE Alu 1 301 -12 205 346 0 26 chr1 9017714 9017792 -273175872 - MIR SINE MIR -70 192 117 2630 102 24 0 chr1 9019989 9020399 -273173265 - MER83 LTR ERV1 -28 420 1 1020 238 114 76 chr1 9020399 9020697 -273172967 + MLT1D LTR MaLR 28 352 -153 1919 137 0 64 chr1 9020697 9021026 -273172638 - AluSx SINE Alu -4 308 1 1020 238 114 76 chr1 9021026 9021187 -273172477 + MLT1D LTR MaLR 352 505 0 409 255 51 51 chr1 9021434 9021591 -273172073 - MIR SINE MIR -1 261 105 1632 174 27 7 chr1 9021633 9021926 -273171738 + L1MB5 LINE L1 5874 6172 -2 2219 69 0 14 chr1 9024305 9024595 -273169069 - AluSc SINE Alu -20 289 4 453 295 36 24 chr1 9024928 9025094 -273168570 - MER5A DNA MER1_type -1 188 21 192 77 0 0 chr1 9026338 9026364 -273167300 + (TA)n Simple_repeat Simple_repeat 2 27 0 300 137 0 0 chr1 9028144 9028195 -273165469 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1613 164 72 10 chr1 9028195 9028487 -273165177 - AluSg SINE Alu 0 310 1 34 0 0 0 chr1 9028492 9028526 -273165138 + AT_rich Low_complexity Low_complexity 1 34 0 1851 138 3 3 chr1 9028574 9029024 -273164640 - AluJb SINE Alu 0 450 1 211 147 0 0 chr1 9029308 9029342 -273164322 - MIR SINE MIR -28 234 201 2034 119 3 28 chr1 9029581 9029901 -273163763 - AluSx SINE Alu 0 312 1 1646 140 37 34 chr1 9029902 9030224 -273163440 - THE1B LTR MaLR -41 323 1 407 243 6 105 chr1 9030308 9030489 -273163175 - MLT1K LTR MaLR 0 588 426 905 199 21 16 chr1 9030513 9030699 -273162965 + MER53 DNA DNA 3 189 0 300 127 0 0 chr1 9031920 9031975 -273161689 + (GA)n Simple_repeat Simple_repeat 1 55 0 508 283 337 4 chr1 9032693 9033159 -273160505 - L2 LINE L2 -867 2447 1827 1181 259 97 12 chr1 9033167 9033591 -273160073 - MLT1C LTR MaLR -1 466 7 1011 96 0 15 chr1 9033892 9034061 -273159603 - FLAM_C SINE Alu 0 167 1 207 100 0 0 chr1 9034939 9034969 -273158695 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 194 241 35 17 chr1 9036272 9036330 -273157334 + MIR SINE MIR 88 146 -62 1917 136 10 3 chr1 9036462 9036756 -273156908 - AluJb SINE Alu -16 296 1 258 160 0 0 chr1 9036756 9036806 -273156858 - AluJb SINE Alu -166 136 87 262 343 73 7 chr1 9037223 9037360 -273156304 + MIR SINE MIR 102 247 -15 2202 97 0 3 chr1 9038236 9038526 -273155138 - AluSq SINE Alu -24 289 1 236 210 12 111 chr1 9038621 9038638 -273155026 - L2 LINE L2 -2 3311 3294 2041 131 0 7 chr1 9038638 9038935 -273154729 - AluSx SINE Alu -17 295 1 236 210 12 111 chr1 9038935 9038998 -273154666 - L2 LINE L2 -19 3294 3239 453 267 215 0 chr1 9039193 9039365 -273154299 + MIR SINE MIR 4 212 -50 192 344 62 0 chr1 9039406 9039502 -273154162 - MIR SINE MIR -97 165 64 813 165 0 8 chr1 9040527 9040660 -273153004 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 9040884 9041184 -273152480 - L1MC4a LINE L1 -6 6115 5784 2109 63 0 0 chr1 9041475 9041730 -273151934 - AluY SINE Alu -56 255 1 742 112 0 8 chr1 9041755 9041880 -273151784 - MER4A LTR ERV1 -540 124 1 385 156 0 0 chr1 9041880 9041943 -273151721 - MER4E LTR ERV1 -716 63 1 271 267 58 0 chr1 9042099 9042185 -273151479 + MIR SINE MIR 61 151 -57 509 277 45 28 chr1 9042581 9042758 -273150906 + MIR SINE MIR 13 192 -70 2195 111 0 16 chr1 9042908 9043223 -273150441 - AluSx SINE Alu -2 310 1 1955 151 17 0 chr1 9043969 9044268 -273149396 + AluSx SINE Alu 1 304 -8 238 214 0 119 chr1 9044879 9044963 -273148701 - MER91 DNA MER1_type 0 140 67 2092 138 0 3 chr1 9045458 9045769 -273147895 + AluSx SINE Alu 1 310 -2 188 180 0 80 chr1 9046836 9046886 -273146778 - L2 LINE L2 -3 3310 3265 425 130 29 0 chr1 9046938 9047007 -273146657 + AluJ/FLAM SINE Alu 6 76 -236 582 217 12 103 chr1 9047250 9047458 -273146206 - MIR SINE MIR -62 146 10 405 300 73 13 chr1 9047571 9047608 -273146056 - MIR SINE MIR -102 160 127 2218 104 7 0 chr1 9047608 9047907 -273145757 + AluSx SINE Alu 1 301 -11 405 300 73 13 chr1 9047907 9048019 -273145645 - MIR SINE MIR -135 127 2 716 189 86 0 chr1 9048823 9048998 -273144666 + L1MB8 LINE L1 5989 6178 0 1518 156 130 7 chr1 9049065 9049325 -273144339 + AluJo SINE Alu 1 296 -6 2021 110 0 46 chr1 9049325 9049692 -273143972 + AluSx SINE Alu 1 312 0 278 365 19 0 chr1 9049997 9050104 -273143560 + MIR3 SINE MIR 74 182 -26 2095 125 3 3 chr1 9050482 9050778 -273142886 + AluSx SINE Alu 1 296 -16 194 241 35 17 chr1 9050910 9050968 -273142696 - MIR SINE MIR -62 146 88 207 100 0 0 chr1 9052271 9052301 -273141363 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1011 96 0 15 chr1 9053179 9053314 -273140350 + FLAM_C SINE Alu 1 133 0 1197 257 97 12 chr1 9053630 9054054 -273139610 + MLT1C LTR MaLR 7 466 -1 883 296 259 10 chr1 9054062 9054758 -273138906 + L2 LINE L2 1827 2695 -619 2331 97 0 0 chr1 9054760 9055060 -273138604 - AluSg SINE Alu -10 300 1 1167 157 0 2 chr1 9057108 9057466 -273136198 + (TCCA)n Simple_repeat Simple_repeat 1 536 0 227 156 67 0 chr1 9057474 9057519 -273136145 + (CCCA)n Simple_repeat Simple_repeat 3 50 0 508 185 32 0 chr1 9057536 9057693 -273135971 + (TCCA)n Simple_repeat Simple_repeat 4 165 0 1934 75 47 0 chr1 9059667 9059921 -273133743 - AluSx SINE Alu -16 296 31 2147 97 7 0 chr1 9060546 9060844 -273132820 - AluSq SINE Alu -13 300 1 217 293 0 27 chr1 9061605 9061680 -273131984 + G-rich Low_complexity Low_complexity 2 74 0 245 217 0 43 chr1 9061778 9061847 -273131817 + G-rich Low_complexity Low_complexity 1 66 0 597 220 162 0 chr1 9061910 9062083 -273131581 - MER58A DNA MER1_type -12 212 12 342 209 0 0 chr1 9063239 9063297 -273130367 - MER58A DNA MER1_type 0 224 167 622 164 0 0 chr1 9063297 9063401 -273130263 - MER58A DNA MER1_type -1 106 3 247 274 16 0 chr1 9063854 9063916 -273129748 + (CA)n Simple_repeat Simple_repeat 1 63 0 444 201 17 17 chr1 9064365 9064544 -273129120 + (TG)n Simple_repeat Simple_repeat 2 180 0 381 131 0 0 chr1 9065483 9065544 -273128120 + (CA)n Simple_repeat Simple_repeat 2 62 0 2353 75 0 0 chr1 9066244 9066538 -273127126 + AluSx SINE Alu 8 301 -11 320 330 160 53 chr1 9066789 9067089 -273126575 + L1MC4a LINE L1 5784 6115 -6 813 165 0 8 chr1 9067313 9067446 -273126218 - FLAM_C SINE Alu -1 132 1 729 207 103 23 chr1 9070120 9070294 -273123370 + MER5A DNA MER1_type 2 189 0 2457 56 0 10 chr1 9070394 9070699 -273122965 + AluY SINE Alu 1 302 -9 2195 159 24 58 chr1 9070955 9071407 -273122257 + L1MB5 LINE L1 5738 6174 0 2379 74 3 0 chr1 9072480 9072779 -273120885 + AluSp SINE Alu 1 300 -13 247 250 25 25 chr1 9073027 9073107 -273120557 - L2 LINE L2 -79 3234 3155 256 276 0 40 chr1 9074380 9074456 -273119208 + MER5A DNA MER1_type 42 114 -75 2293 95 7 0 chr1 9077956 9078262 -273115402 + AluSp SINE Alu 1 308 -5 1760 149 30 27 chr1 9078654 9078955 -273114709 - AluJb SINE Alu -10 302 1 2214 117 0 0 chr1 9078964 9079262 -273114402 - AluSx SINE Alu -14 298 1 2848 158 16 60 chr1 9079341 9079961 -273113703 + L1MB3 LINE L1 5558 6150 -33 1099 82 0 0 chr1 9079961 9080096 -273113568 + AluSq/x SINE Alu 1 135 -178 2250 106 0 0 chr1 9080096 9080398 -273113266 + AluSx SINE Alu 1 302 -10 2372 92 0 0 chr1 9080851 9081156 -273112508 + AluSx SINE Alu 1 305 -7 876 125 0 22 chr1 9082278 9082414 -273111250 - FLAM_C SINE Alu 0 133 1 464 339 107 61 chr1 9082537 9082851 -273110813 + L1ME3 LINE L1 5320 5669 -493 2240 106 3 3 chr1 9082851 9083163 -273110501 + AluSq SINE Alu 1 312 -1 464 339 107 61 chr1 9083163 9083373 -273110291 + L1ME3 LINE L1 5669 5868 -294 586 157 25 33 chr1 9083539 9083660 -273110004 + L1MB3 LINE L1 5476 5595 -588 515 170 28 19 chr1 9083666 9083772 -273109892 + L1MB3 LINE L1 6077 6183 0 2030 85 32 21 chr1 9083985 9084296 -273109368 - AluSq SINE Alu 0 314 1 1446 122 22 0 chr1 9084759 9084981 -273108683 - AluSg/x SINE Alu 0 312 86 247 218 0 36 chr1 9085147 9085202 -273108462 + (CCCA)n Simple_repeat Simple_repeat 3 55 0 626 195 86 104 chr1 9085482 9085703 -273107961 + MER20 DNA MER1_type 1 217 -2 273 356 22 37 chr1 9085836 9085971 -273107693 + MIR3 SINE MIR 35 167 -41 428 206 28 9 chr1 9086040 9086147 -273107517 - MER103 DNA DNA -41 125 17 1061 211 72 0 chr1 9086574 9086783 -273106881 + MER58A DNA MER1_type 1 224 0 302 248 23 53 chr1 9087114 9087247 -273106417 - Charlie7 DNA MER1_type -47 2565 2437 866 287 122 26 chr1 9088489 9088914 -273104750 + L2 LINE L2 2845 3310 -3 537 284 129 10 chr1 9092091 9092292 -273101372 + MIR SINE MIR 24 248 -14 341 267 114 8 chr1 9092740 9092871 -273100793 + MER104 DNA Tc2 33 177 -3 188 379 0 0 chr1 9092929 9092995 -273100669 + L2 LINE L2 3198 3263 -9 367 241 24 0 chr1 9094212 9094295 -273099369 + L2 LINE L2 3224 3308 -5 218 57 0 75 chr1 9095040 9095093 -273098571 + (GGA)n Simple_repeat Simple_repeat 1 49 0 1894 108 46 29 chr1 9095268 9095574 -273098090 - AluSx SINE Alu -1 311 1 255 328 115 16 chr1 9095618 9095740 -273097924 + L2 LINE L2 3096 3229 -43 359 252 165 8 chr1 9095841 9095968 -273097696 - MIR SINE MIR -75 187 41 21 0 0 0 chr1 9096625 9096646 -273097018 + AT_rich Low_complexity Low_complexity 1 21 0 1420 170 50 47 chr1 9096699 9096999 -273096665 + AluJb SINE Alu 1 301 -11 251 273 22 65 chr1 9097157 9097296 -273096368 + L2 LINE L2 2935 3067 -205 273 276 95 0 chr1 9097568 9097673 -273095991 - MIR SINE MIR -103 159 45 239 234 0 0 chr1 9098056 9098103 -273095561 + (CA)n Simple_repeat Simple_repeat 2 48 0 234 0 0 0 chr1 9098589 9098615 -273095049 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 266 376 42 30 chr1 9098967 9099132 -273094532 + MIR SINE MIR 96 262 0 2268 113 0 0 chr1 9100278 9100588 -273093076 - AluSx SINE Alu -2 310 1 205 269 0 0 chr1 9100660 9100712 -273092952 - L2 LINE L2 0 3272 3221 646 251 58 72 chr1 9100978 9101043 -273092621 + MIR SINE MIR 32 96 -166 240 35 0 0 chr1 9101043 9101072 -273092592 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 646 251 58 72 chr1 9101072 9101085 -273092579 + MIR SINE MIR 96 108 -154 2047 93 0 11 chr1 9101085 9101365 -273092299 - AluSq SINE Alu -34 279 3 646 251 58 72 chr1 9101365 9101508 -273092156 + MIR SINE MIR 108 251 -11 21 36 0 0 chr1 9101715 9101743 -273091921 + AT_rich Low_complexity Low_complexity 1 28 0 279 349 23 16 chr1 9101946 9102075 -273091589 + L1MB8 LINE L1 6049 6178 0 1331 122 19 158 chr1 9102155 9102466 -273091198 + AluJo SINE Alu 1 268 -44 255 198 55 44 chr1 9103005 9103096 -273090568 + L1MC5 LINE L1 7835 7926 -35 21 0 0 0 chr1 9103300 9103321 -273090343 + AT_rich Low_complexity Low_complexity 1 21 0 2030 135 0 10 chr1 9103767 9104071 -273089593 - AluJb SINE Alu -11 301 1 2057 128 3 0 chr1 9104633 9104921 -273088743 - AluSx SINE Alu -23 289 1 1261 155 0 5 chr1 9104949 9105143 -273088521 + AluJo SINE Alu 87 279 -33 300 27 0 0 chr1 9105143 9105180 -273088484 + (CA)n Simple_repeat Simple_repeat 1 37 0 * 303 49 0 0 chr1 9105179 9105220 -273088444 + (TC)n Simple_repeat Simple_repeat 1 41 0 331 325 97 0 chr1 9105755 9105869 -273087795 + MIR SINE MIR 125 249 -13 1625 195 24 0 chr1 9106964 9107251 -273086413 + L1MB5 LINE L1 5881 6174 0 2221 128 0 0 chr1 9107254 9107566 -273086098 + AluSx SINE Alu 1 312 0 467 262 152 42 chr1 9107807 9107998 -273085666 + MIR SINE MIR 11 222 -40 290 287 215 15 chr1 9108559 9108754 -273084910 + L2 LINE L2 3039 3272 0 214 281 132 83 chr1 9108964 9109085 -273084579 - L2 LINE L2 0 3272 3146 1112 150 75 0 chr1 9109526 9109713 -273083951 + AluJo SINE Alu 5 205 -107 2135 166 55 36 chr1 9110033 9110504 -273083160 - MLT2B3 LTR ERVL 0 554 75 827 161 97 51 chr1 9110604 9110664 -273083000 - Ricksha DNA DNA -1634 412 343 6180 158 20 15 chr1 9110664 9111831 -273081833 - ERVL-B3 LTR ERVL 0 5764 4593 1110 182 120 8 chr1 9111831 9112089 -273081575 - MLT2B3 LTR ERVL -193 361 75 822 124 11 68 chr1 9112188 9112365 -273081299 - Ricksha DNA DNA -2833 413 247 13238 159 54 33 chr1 9112390 9112969 -273080695 - ERVL-B3 LTR ERVL -1177 4587 4022 1812 121 39 39 chr1 9112969 9113274 -273080390 - AluJo SINE Alu -7 305 1 13238 159 54 33 chr1 9113274 9114499 -273079165 - ERVL-B3 LTR ERVL -1742 4022 2825 1736 153 0 59 chr1 9114499 9114705 -273078959 - AluJo SINE Alu -11 301 84 2105 104 3 3 chr1 9114705 9114992 -273078672 + AluSq SINE Alu 3 289 -24 189 0 0 0 chr1 9114992 9115013 -273078651 + (GA)n Simple_repeat Simple_repeat 2 22 0 796 122 0 0 chr1 9115017 9115124 -273078540 - FLAM_C SINE Alu -35 108 2 13238 159 54 33 chr1 9115125 9116006 -273077658 - ERVL-B3 LTR ERVL -2939 2825 1964 744 94 0 0 chr1 9116006 9116112 -273077552 + (TTCA)n Simple_repeat Simple_repeat 4 109 0 13238 159 54 33 chr1 9116112 9117014 -273076650 - ERVL-B3 LTR ERVL -3800 1964 959 243 188 0 0 chr1 9117842 9117890 -273075774 + (TG)n Simple_repeat Simple_repeat 2 49 0 205 315 0 0 chr1 9117908 9117962 -273075702 + (TG)n Simple_repeat Simple_repeat 1 54 0 331 329 153 0 chr1 9118113 9118283 -273075381 + MIR SINE MIR 28 223 -39 369 102 0 0 chr1 9119231 9119290 -273074374 + (CA)n Simple_repeat Simple_repeat 1 59 0 369 230 0 0 chr1 9120099 9120277 -273073387 + (CA)n Simple_repeat Simple_repeat 1 178 0 438 176 0 0 chr1 9120334 9120453 -273073211 + (CA)n Simple_repeat Simple_repeat 2 120 0 273 259 0 0 chr1 9120480 9120627 -273073037 + (CA)n Simple_repeat Simple_repeat 2 148 0 22 56 0 0 chr1 9120842 9120878 -273072786 + GC_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 9120924 9120959 -273072705 + GC_rich Low_complexity Low_complexity 1 35 0 21 107 0 0 chr1 9121098 9121182 -273072482 + GC_rich Low_complexity Low_complexity 1 84 0 226 281 16 16 chr1 9121234 9121362 -273072302 + C-rich Low_complexity Low_complexity 4 131 0 21 71 0 0 chr1 9121394 9121436 -273072228 + GC_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 9121459 9121484 -273072180 + GC_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 9121504 9121534 -273072130 + GC_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr1 9121656 9121685 -273071979 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 34 0 0 0 chr1 9121723 9121757 -273071907 + GC_rich Low_complexity Low_complexity 1 34 0 971 187 0 65 chr1 9122760 9122990 -273070674 + AluJo SINE Alu 1 215 -97 2362 74 3 3 chr1 9122997 9123308 -273070356 + AluY SINE Alu 1 311 0 1552 120 0 4 chr1 9123307 9123532 -273070132 + AluSc SINE Alu 74 297 -12 * 430 210 0 0 chr1 9124665 9124746 -273068918 + MIR SINE MIR 60 140 -122 783 178 0 0 chr1 9125053 9125171 -273068493 - AluJb SINE Alu -194 118 1 29 28 0 0 chr1 9125611 9125647 -273068017 + AT_rich Low_complexity Low_complexity 1 36 0 250 319 119 38 chr1 9125714 9125899 -273067765 - L2 LINE L2 0 3313 3114 228 281 0 0 chr1 9126208 9126265 -273067399 - L2 LINE L2 -2 3270 3214 2014 133 0 3 chr1 9126389 9126683 -273066981 - AluSx SINE Alu -19 293 1 646 295 72 0 chr1 9126861 9127054 -273066610 - MIR SINE MIR -6 256 50 1324 181 116 18 chr1 9127448 9127785 -273065879 + MLT1C LTR MaLR 6 375 -92 314 311 196 5 chr1 9127796 9128005 -273065659 + L2 LINE L2 2589 2837 -477 480 242 109 0 chr1 9128177 9128305 -273065359 - MLT1H LTR MaLR 0 549 408 1617 83 41 0 chr1 9129275 9129493 -273064171 + AluSg SINE Alu 1 227 -83 586 257 140 23 chr1 9129493 9129800 -273063864 + HAL1 LINE L1 1874 2216 -291 896 186 54 15 chr1 9129839 9130043 -273063621 - MIR SINE MIR 0 262 51 450 231 42 88 chr1 9130043 9130259 -273063405 + HAL1 LINE L1 2280 2485 -22 1753 147 65 73 chr1 9130259 9130627 -273063037 - MLT1A1 LTR MaLR 0 365 1 1296 171 121 14 chr1 9131191 9131471 -273062193 - AluJb SINE Alu -2 310 1 515 186 0 17 chr1 9131916 9132034 -273061630 + GA-rich Low_complexity Low_complexity 1 116 0 295 276 29 9 chr1 9132682 9132787 -273060877 - MIR3 SINE MIR -21 187 81 349 335 67 11 chr1 9132898 9133077 -273060587 + L2 LINE L2 3071 3259 -13 323 250 113 8 chr1 9133483 9133607 -273060057 - MIR SINE MIR -110 152 16 262 173 12 12 chr1 9134033 9134114 -273059550 + G-rich Low_complexity Low_complexity 3 83 0 180 0 0 0 chr1 9134204 9134224 -273059440 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 375 119 0 0 chr1 9134643 9134710 -273058954 + (TC)n Simple_repeat Simple_repeat 1 67 0 907 199 21 16 chr1 9135931 9136117 -273057547 - MER53 DNA DNA 0 189 3 452 243 6 105 chr1 9136141 9136322 -273057342 + MLT1K LTR MaLR 426 588 0 2136 123 32 59 chr1 9136406 9136729 -273056935 + THE1B LTR MaLR 1 315 -49 1944 107 3 31 chr1 9136729 9136865 -273056799 + AluSx SINE Alu 1 139 -177 2264 73 3 10 chr1 9136865 9137165 -273056499 + AluY SINE Alu 1 298 -13 1944 107 3 31 chr1 9137165 9137352 -273056312 + AluSx SINE Alu 139 316 0 2136 123 32 59 chr1 9137352 9137401 -273056263 + THE1B LTR MaLR 315 364 0 34 55 0 0 chr1 9137709 9137764 -273055900 + AT_rich Low_complexity Low_complexity 1 55 0 2266 94 0 3 chr1 9137800 9138098 -273055566 - AluSx SINE Alu -15 297 1 249 264 81 0 chr1 9138649 9138736 -273054928 + MIR SINE MIR 52 147 -61 248 252 75 100 chr1 9139434 9139467 -273054197 + HAL1b LINE L1 794 826 -522 2032 122 10 19 chr1 9139467 9139779 -273053885 + AluSx SINE Alu 1 309 -3 248 252 75 100 chr1 9139779 9139935 -273053729 + HAL1b LINE L1 826 984 -364 2123 106 0 3 chr1 9139935 9140228 -273053436 - AluSx SINE Alu -20 292 1 248 252 75 100 chr1 9140228 9140438 -273053226 + HAL1b LINE L1 984 1184 -164 25 31 0 0 chr1 9140598 9140630 -273053034 + AT_rich Low_complexity Low_complexity 1 32 0 180 383 148 9 chr1 9141280 9141395 -273052269 - L2 LINE L2 0 3272 3142 380 298 8 0 chr1 9142073 9142197 -273051467 - MLT1K LTR MaLR -316 272 148 2242 70 28 0 chr1 9143248 9143534 -273050130 + AluSx SINE Alu 1 294 -18 1809 163 14 0 chr1 9146215 9146510 -273047154 - AluJo SINE Alu -2 310 12 296 319 113 11 chr1 9146518 9146703 -273046961 - MER112 DNA MER1_type -54 206 3 2025 108 17 0 chr1 9147362 9147657 -273046007 + AluSx SINE Alu 1 300 -12 898 115 0 0 chr1 9148688 9148810 -273044854 + FLAM_C SINE Alu 1 122 -21 218 286 60 65 chr1 9149114 9149282 -273044382 + L2 LINE L2 2924 3090 -182 327 256 144 24 chr1 9151547 9151672 -273041992 + MIR SINE MIR 107 246 -16 284 200 122 11 chr1 9152831 9152921 -273040743 + MIR SINE MIR 67 166 -96 361 327 168 13 chr1 9153049 9153669 -273039995 - L2 LINE L2 -296 3017 2288 396 181 44 72 chr1 9153734 9154149 -273039515 + (CAA)n Simple_repeat Simple_repeat 1 403 0 304 225 33 71 chr1 9154180 9154362 -273039302 + (CAA)n Simple_repeat Simple_repeat 2 176 0 387 185 52 58 chr1 9154391 9154564 -273039100 + (CAA)n Simple_repeat Simple_repeat 2 173 0 331 163 42 105 chr1 9154596 9154786 -273038878 + (CAA)n Simple_repeat Simple_repeat 2 179 0 225 211 38 53 chr1 9154916 9155049 -273038615 + (CATAA)n Simple_repeat Simple_repeat 2 132 0 2331 69 13 3 chr1 9155194 9155498 -273038166 + AluY SINE Alu 1 307 -4 215 160 60 20 chr1 9155576 9155676 -273037988 + (CAA)n Simple_repeat Simple_repeat 2 105 0 275 211 50 67 chr1 9155693 9155873 -273037791 + (CAA)n Simple_repeat Simple_repeat 2 178 0 232 256 45 51 chr1 9155948 9156124 -273037540 + (CAA)n Simple_repeat Simple_repeat 2 176 0 292 213 20 80 chr1 9156197 9156347 -273037317 + (CAA)n Simple_repeat Simple_repeat 2 142 0 181 200 25 0 chr1 9156716 9156756 -273036908 + L2 LINE L2 2980 3020 -252 264 280 87 29 chr1 9157010 9157045 -273036619 + L1MEd LINE L1 843 875 -5244 1592 140 55 49 chr1 9157045 9157352 -273036312 + AluJb SINE Alu 1 309 -3 264 280 87 29 chr1 9157352 9157523 -273036141 + L1MEd LINE L1 875 1061 -5058 614 288 19 28 chr1 9158298 9158513 -273035151 - MIR SINE MIR -38 224 12 240 299 0 58 chr1 9158741 9158828 -273034836 - Charlie8 DNA MER1_type -2209 208 127 1931 151 0 0 chr1 9158900 9159217 -273034447 + AluJo SINE Alu 1 317 0 2528 207 48 11 chr1 9159227 9159796 -273033868 + L1MB8 LINE L1 5589 6178 0 531 304 86 45 chr1 9160033 9160082 -273033582 + MIR SINE MIR 4 50 -212 1947 122 11 0 chr1 9160082 9160408 -273033256 - AluSx SINE Alu 0 329 1 531 304 86 45 chr1 9160408 9160599 -273033065 + MIR SINE MIR 50 256 -6 511 268 73 0 chr1 9160849 9161013 -273032651 - MER104 DNA MER2_type -4 176 1 604 167 48 8 chr1 9161785 9161911 -273031753 + L1MB7 LINE L1 6035 6165 -19 630 180 50 29 chr1 9161948 9162087 -273031577 + FLAM_A SINE Alu 1 142 0 224 292 0 14 chr1 9162419 9162491 -273031173 - MIR SINE MIR -62 200 130 339 25 0 0 chr1 9163008 9163048 -273030616 + (CAA)n Simple_repeat Simple_repeat 2 41 0 334 219 0 79 chr1 9163945 9164123 -273029541 + (GGGTG)n Simple_repeat Simple_repeat 5 168 0 756 163 23 0 chr1 9165834 9165963 -273027701 - FLAM_A SINE Alu -1 132 1 228 340 10 10 chr1 9166127 9166230 -273027434 + GA-rich Low_complexity Low_complexity 2 104 0 2112 95 7 3 chr1 9168238 9168532 -273025132 + AluSx SINE Alu 1 295 -17 850 258 68 0 chr1 9170074 9170295 -273023369 + MIR SINE MIR 5 240 -22 259 271 90 71 chr1 9170350 9170505 -273023159 - MIR SINE MIR -48 214 57 207 206 0 73 chr1 9172153 9172221 -273021443 + MER5B DNA MER1_type 1 63 -115 184 311 40 0 chr1 9172384 9172458 -273021206 - MER5A DNA MER1_type -78 111 35 326 319 135 12 chr1 9172495 9172658 -273021006 - MIR SINE MIR 0 262 80 1798 122 29 11 chr1 9172782 9173093 -273020571 + AluJb SINE Alu 1 316 0 476 331 6 29 chr1 9173840 9174015 -273019649 + MIR3 SINE MIR 7 177 -31 1920 138 0 0 chr1 9175156 9175447 -273018217 + AluSx SINE Alu 22 312 0 620 194 12 43 chr1 9175447 9175693 -273017971 - MER63 DNA MER1_type -147 915 1 1539 221 192 32 chr1 9175702 9176641 -273017023 + L2 LINE L2 2234 3313 0 689 221 32 100 chr1 9176773 9176949 -273016715 - MIR SINE MIR 0 262 106 2054 117 40 0 chr1 9176949 9177249 -273016415 + AluSx SINE Alu 1 312 0 689 221 32 100 chr1 9177249 9177321 -273016343 - MIR SINE MIR -156 106 31 463 244 306 0 chr1 9177631 9177791 -273015873 + MIR SINE MIR 48 256 -6 1908 110 16 39 chr1 9177793 9178102 -273015562 - AluSx SINE Alu -10 302 1 1834 102 8 8 chr1 9178192 9178457 -273015207 + AluSx SINE Alu 1 265 -47 1689 164 0 4 chr1 9178572 9178852 -273014812 + AluJb SINE Alu 3 281 -31 26 64 0 0 chr1 9178866 9178913 -273014751 + AT_rich Low_complexity Low_complexity 1 47 0 44 70 0 0 chr1 9179325 9179411 -273014253 + GC_rich Low_complexity Low_complexity 1 86 0 30 58 0 14 chr1 9179708 9179732 -273013932 + GC_rich Low_complexity Low_complexity 1 24 -44 208 24 24 71 chr1 9179732 9179774 -273013890 + (CGGGGG)n Simple_repeat Simple_repeat 5 44 0 30 58 0 14 chr1 9179774 9179818 -273013846 + GC_rich Low_complexity Low_complexity 24 68 0 316 265 191 25 chr1 9180152 9180314 -273013350 + MIR SINE MIR 65 253 -9 1999 113 0 0 chr1 9180478 9180790 -273012874 - AluJb SINE Alu 0 340 29 1905 121 13 26 chr1 9181388 9181693 -273011971 + AluSx SINE Alu 1 301 -11 2391 77 3 0 chr1 9181693 9182003 -273011661 + AluSp SINE Alu 1 312 -1 234 170 22 0 chr1 9182657 9182706 -273010958 - MIR SINE MIR -68 140 95 1684 151 3 43 chr1 9182894 9183193 -273010471 - AluJo SINE Alu -13 299 13 813 147 74 165 chr1 9183253 9183633 -273010031 - MLT1E2 LTR MaLR 0 505 191 2494 65 0 0 chr1 9183633 9183943 -273009721 - AluY SINE Alu -1 310 1 813 147 74 165 chr1 9183943 9183970 -273009694 - MLT1E2 LTR MaLR -314 191 163 1908 106 0 0 chr1 9183970 9184225 -273009439 + AluSq SINE Alu 1 255 -58 826 137 0 0 chr1 9184225 9184349 -273009315 + AluSg/x SINE Alu 169 292 -18 524 202 54 8 chr1 9184351 9184480 -273009184 - MLT1E2 LTR MaLR -456 170 36 1296 192 112 0 chr1 9184484 9184760 -273008904 - AluJo SINE Alu 0 312 6 2037 127 0 7 chr1 9184769 9185068 -273008596 - AluSx SINE Alu -13 299 3 2126 92 14 3 chr1 9185164 9185459 -273008205 - AluSx SINE Alu -14 298 1 4055 165 15 82 chr1 9185464 9185847 -273007817 - L1MB8 LINE L1 0 6178 5771 1956 141 17 0 chr1 9185847 9186146 -273007518 - AluSx SINE Alu -8 304 1 4055 165 15 82 chr1 9186146 9186361 -273007303 - L1MB8 LINE L1 -407 5771 5543 1914 127 7 23 chr1 9186361 9186660 -273007004 - AluSx SINE Alu -18 294 1 4055 165 15 82 chr1 9186660 9186803 -273006861 - L1MB8 LINE L1 -635 5543 5392 2361 78 3 7 chr1 9186803 9187111 -273006553 - AluSx SINE Alu -5 307 1 4055 165 15 82 chr1 9187111 9187272 -273006392 - L1MB8 LINE L1 -786 5392 5222 1630 162 0 45 chr1 9187272 9187586 -273006078 - AluJb SINE Alu -12 300 1 4055 165 15 82 chr1 9187586 9187818 -273005846 - L1MB8 LINE L1 -956 5222 5156 2119 125 0 0 chr1 9187818 9188114 -273005550 - AluSq SINE Alu -17 296 1 4055 165 15 82 chr1 9188114 9188337 -273005327 - L1MB8 LINE L1 -1022 5156 4920 236 224 0 0 chr1 9188459 9188508 -273005156 + L2 LINE L2 3221 3269 -3 841 288 105 30 chr1 9189281 9189854 -273003810 - L2 LINE L2 -19 3294 2677 2117 128 0 0 chr1 9189960 9190265 -273003399 + AluSx SINE Alu 1 305 -7 475 176 19 37 chr1 9190266 9190374 -273003290 - MER74A LTR ERVL -10 548 443 2286 94 0 3 chr1 9190376 9190868 -273002796 + AluSc SINE Alu 1 309 0 1064 103 0 22 chr1 9190672 9191215 -273002449 + (GAA)n Simple_repeat Simple_repeat 1 539 0 1783 201 45 21 chr1 9191215 9191639 -273002025 - MER74A LTR ERVL -99 459 26 193 333 0 0 chr1 9191697 9191760 -273001904 - L2 LINE L2 -798 2516 2454 1833 125 71 14 chr1 9191762 9191898 -273001766 + AluSx SINE Alu 1 128 -184 1893 143 3 10 chr1 9191898 9192192 -273001472 + AluSc SINE Alu 1 292 -17 1833 125 71 14 chr1 9192192 9192350 -273001314 + AluSx SINE Alu 128 312 0 2135 95 0 20 chr1 9192900 9193196 -273000468 - AluSx SINE Alu 0 312 23 1870 143 13 23 chr1 9193269 9193577 -273000087 - AluJb SINE Alu -7 305 1 914 142 0 8 chr1 9194138 9194272 -272999392 - FLAM_C SINE Alu 0 133 1 3888 165 46 23 chr1 9194447 9194885 -272998779 + L1MB4 LINE L1 5173 5599 -581 1994 89 55 28 chr1 9194885 9195176 -272998488 + AluSx SINE Alu 1 299 -13 3888 165 46 23 chr1 9195176 9195640 -272998024 + L1MB4 LINE L1 5599 6096 -84 892 151 0 7 chr1 9195652 9195798 -272997866 + AluJb SINE Alu 1 145 -167 2477 62 0 0 chr1 9195799 9196104 -272997560 + AluY SINE Alu 1 305 -6 1688 108 88 0 chr1 9196527 9196798 -272996866 + AluJb SINE Alu 12 304 0 1912 120 68 0 chr1 9196812 9197104 -272996560 + AluSx SINE Alu 1 312 0 2155 117 3 0 chr1 9197648 9197957 -272995707 + AluSx SINE Alu 1 310 -2 2025 84 3 34 chr1 9198232 9198553 -272995111 - AluSx SINE Alu 0 312 1 2017 122 24 0 chr1 9198553 9198847 -272994817 - AluSx SINE Alu -11 301 1 2060 143 7 0 chr1 9199370 9199678 -272993986 - AluSg SINE Alu 0 310 1 1888 143 0 10 chr1 9199678 9199972 -272993692 - AluJb SINE Alu -21 291 1 208 283 0 0 chr1 9200588 9200641 -272993023 + L2 LINE L2 3189 3241 -31 1479 178 52 0 chr1 9200956 9201226 -272992438 + AluJb SINE Alu 7 290 -22 1220 284 28 54 chr1 9201278 9201739 -272991925 + MLT1J LTR MaLR 14 462 -49 586 184 65 30 chr1 9201991 9202011 -272991653 - MER53 DNA DNA -15 174 156 2380 92 0 0 chr1 9202011 9202314 -272991350 - AluSx SINE Alu -9 303 1 586 184 65 30 chr1 9202314 9202461 -272991203 - MER53 DNA DNA -33 156 1 492 274 62 44 chr1 9202718 9202965 -272990699 + MIR SINE MIR 1 250 -12 249 33 0 0 chr1 9203177 9203207 -272990457 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 329 102 20 0 chr1 9203226 9203275 -272990389 + MLT1B LTR MaLR 1 50 -340 2023 169 19 3 chr1 9203336 9203696 -272989968 + MLT1B LTR MaLR 25 390 0 207 313 27 68 chr1 9203741 9203855 -272989809 - L2 LINE L2 0 3272 3164 1805 157 0 41 chr1 9203855 9204031 -272989633 - AluJo SINE Alu -6 306 147 2223 89 3 7 chr1 9204031 9204333 -272989331 - AluSp SINE Alu -12 301 1 1805 157 0 41 chr1 9204333 9204475 -272989189 - AluJo SINE Alu -165 147 1 207 313 27 68 chr1 9204475 9204507 -272989157 - L2 LINE L2 -108 3164 3132 1788 169 3 0 chr1 9205006 9205307 -272988357 + AluSx SINE Alu 1 302 -10 279 292 67 46 chr1 9205399 9205594 -272988070 - L2 LINE L2 -1 3312 3114 2162 100 17 0 chr1 9205605 9205906 -272987758 - AluSp SINE Alu -6 307 2 1989 113 38 3 chr1 9205952 9206245 -272987419 + AluSx SINE Alu 1 303 -9 184 326 0 0 chr1 9206717 9206766 -272986898 + L2 LINE L2 3265 3313 0 2298 88 3 0 chr1 9207398 9207695 -272985969 + AluSp SINE Alu 9 306 -7 844 145 0 8 chr1 9208280 9208411 -272985253 - FLAM_C SINE Alu 0 133 4 636 182 179 23 chr1 9208661 9208851 -272984813 + MIR SINE MIR 1 206 -56 2320 79 7 0 chr1 9208882 9209186 -272984478 + AluSp SINE Alu 1 306 -7 2383 60 0 3 chr1 9209271 9209572 -272984092 + AluY SINE Alu 1 300 -11 1707 197 92 15 chr1 9209653 9210080 -272983584 + MLT1C LTR MaLR 1 467 0 223 212 153 0 chr1 9210231 9210316 -272983348 - MIR3 SINE MIR -45 163 66 400 368 0 28 chr1 9210368 9210550 -272983114 + MIR3 SINE MIR 30 206 -2 252 0 0 0 chr1 9210915 9210943 -272982721 + (CA)n Simple_repeat Simple_repeat 2 29 0 187 31 62 0 chr1 9211542 9211574 -272982090 + T-rich Low_complexity Low_complexity 2 35 0 210 150 0 0 chr1 9212608 9212648 -272981016 + (CAG)n Simple_repeat Simple_repeat 3 42 0 436 72 29 0 chr1 9212660 9212729 -272980935 + (GGA)n Simple_repeat Simple_repeat 1 71 0 197 65 32 0 chr1 9215532 9215563 -272978101 + (CCCG)n Simple_repeat Simple_repeat 1 32 0 200 216 0 20 chr1 9216770 9216821 -272976843 + GA-rich Low_complexity Low_complexity 2 51 0 452 240 40 0 chr1 9217366 9217491 -272976173 - MIR3 SINE MIR -21 187 58 1714 141 0 4 chr1 9218899 9219161 -272974503 - AluJb SINE Alu -18 294 34 1974 139 13 3 chr1 9219186 9219528 -272974136 - AluSx SINE Alu 0 345 1 820 169 0 0 chr1 9219619 9219749 -272973915 + FLAM_C SINE Alu 3 132 -1 817 183 15 0 chr1 9219822 9219959 -272973705 + FLAM_C SINE Alu 2 140 -3 1394 164 30 69 chr1 9220253 9220558 -272973106 + AluJb SINE Alu 1 293 -19 446 33 0 16 chr1 9220558 9220619 -272973045 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2211 95 6 13 chr1 9221984 9222299 -272971365 - AluSq SINE Alu 0 313 1 1250 157 14 9 chr1 9223041 9223258 -272970406 - LTR26E LTR ERV1 -8 614 397 722 282 177 26 chr1 9223336 9223715 -272969949 - L2 LINE L2 -15 3298 2863 2411 246 46 43 chr1 9223722 9223817 -272969847 - L2 LINE L2 -625 2689 2596 1363 171 57 67 chr1 9223817 9224116 -272969548 + AluJb SINE Alu 1 296 -16 2411 246 46 43 chr1 9224116 9224825 -272968839 - L2 LINE L2 -718 2596 1883 2197 113 0 7 chr1 9225102 9225411 -272968253 - AluSx SINE Alu -5 307 1 421 163 325 0 chr1 9225902 9226025 -272967639 + MER3 DNA MER1_type 41 203 -6 2114 115 0 19 chr1 9226160 9226474 -272967190 + AluSx SINE Alu 1 308 -4 1009 133 66 0 chr1 9226474 9226640 -272967024 + AluSg/x SINE Alu 132 308 -2 421 280 65 60 chr1 9226892 9227101 -272966563 + MIR SINE MIR 34 246 -16 653 171 8 0 chr1 9227919 9228042 -272965622 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 9228043 9228078 -272965586 + AT_rich Low_complexity Low_complexity 1 35 0 1344 150 5 0 chr1 9228084 9228297 -272965367 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 9228480 9228769 -272964895 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 9229546 9229580 -272964084 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 9229679 9229872 -272963792 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 9229975 9230282 -272963382 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr1 9231504 9231525 -272962139 + GC_rich Low_complexity Low_complexity 1 21 0 224 209 0 0 chr1 9234050 9234093 -272959571 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 9234128 9234221 -272959443 - L2 LINE L2 -338 2975 2872 297 322 68 1 chr1 9234493 9234639 -272959025 + MIR SINE MIR 18 169 -67 2069 142 0 0 chr1 9234867 9235176 -272958488 - AluJo SINE Alu -3 309 1 2170 92 7 13 chr1 9236005 9236310 -272957354 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 9236529 9236645 -272957019 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 9236645 9236777 -272956887 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 9236777 9236876 -272956788 - MER2 DNA MER2_type -111 234 123 2122 99 3 0 chr1 9236877 9237171 -272956493 + AluSq SINE Alu 1 295 -18 763 143 84 0 chr1 9237173 9237292 -272956372 + AluSg/x SINE Alu 143 271 -39 628 198 25 0 chr1 9237299 9237420 -272956244 - MER2 DNA MER2_type -220 125 2 1393 118 22 18 chr1 9237939 9238168 -272955496 - AluJb SINE Alu -1 311 82 2120 130 0 0 chr1 9238269 9238569 -272955095 + AluSx SINE Alu 1 300 -12 454 183 0 24 chr1 9238569 9238645 -272955019 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 9238865 9239113 -272954551 - MIR SINE MIR -3 259 8 2826 200 43 32 chr1 9239206 9239790 -272953874 - MLT1E LTR MaLR -3 590 1 1989 132 0 0 chr1 9240659 9240970 -272952694 - AluSx SINE Alu 0 312 2 855 114 0 2 chr1 9241000 9241258 -272952406 + AluJ SINE Alu 1 304 -8 294 222 80 115 chr1 9241554 9241784 -272951880 + MLT1C LTR MaLR 99 340 -165 2121 99 20 3 chr1 9241785 9242079 -272951585 + AluSx SINE Alu 1 299 -13 1786 151 3 3 chr1 9242382 9242666 -272950998 - AluJb SINE Alu -18 294 11 284 125 0 0 chr1 9242666 9242706 -272950958 - Alu SINE Alu -262 40 1 688 219 140 79 chr1 9242805 9243194 -272950470 - MLT1C LTR MaLR -41 442 1 2184 89 3 3 chr1 9243582 9243873 -272949791 + AluSx SINE Alu 1 291 -21 2087 132 0 0 chr1 9243927 9244231 -272949433 - AluY SINE Alu -7 304 1 203 322 17 0 chr1 9244424 9244483 -272949181 - L2 LINE L2 -10 3303 3244 2207 103 3 0 chr1 9244879 9245180 -272948484 + AluSx SINE Alu 3 304 -8 895 132 0 0 chr1 9245773 9245909 -272947755 - AluJb SINE Alu -176 136 1 258 105 0 0 chr1 9245935 9245973 -272947691 + (CA)n Simple_repeat Simple_repeat 2 39 0 1735 156 30 7 chr1 9246069 9246364 -272947300 - AluJo SINE Alu -10 302 1 2210 81 7 29 chr1 9246821 9247130 -272946534 - AluSg SINE Alu -8 302 1 2158 94 13 3 chr1 9247142 9247451 -272946213 - AluSx SINE Alu 0 312 1 1480 164 0 82 chr1 9248179 9248326 -272945338 + AluJb SINE Alu 1 108 -204 2257 99 0 3 chr1 9248326 9248628 -272945036 + AluSx SINE Alu 2 302 -10 1480 164 0 82 chr1 9248628 9248810 -272944854 + AluJb SINE Alu 108 303 -9 1066 162 5 79 chr1 9249703 9249864 -272943800 - MER20 DNA MER1_type -4 215 72 2228 118 0 0 chr1 9249864 9250168 -272943496 - AluSx SINE Alu -8 304 1 1066 162 5 79 chr1 9250168 9250222 -272943442 - MER20 DNA MER1_type -147 72 16 972 90 0 0 chr1 9250928 9251061 -272942603 - AluSp SINE Alu -180 133 1 246 128 0 0 chr1 9252486 9252525 -272941139 + (T)n Simple_repeat Simple_repeat 1 39 0 638 281 50 15 chr1 9253512 9253595 -272940069 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 9253595 9253720 -272939944 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 9253720 9253744 -272939920 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 9253744 9253918 -272939746 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 9253918 9254033 -272939631 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 9254073 9254195 -272939469 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 9254238 9254319 -272939345 - MLT1L LTR MaLR -534 81 1 377 370 29 0 chr1 9254341 9254479 -272939185 + L1MC4 LINE L1 6567 6708 -1334 2174 101 3 3 chr1 9254500 9254796 -272938868 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 9254913 9254939 -272938725 + (T)n Simple_repeat Simple_repeat 1 26 0 2196 99 3 10 chr1 9255465 9255778 -272937886 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 9256019 9256347 -272937317 - AluSq SINE Alu 0 323 1 1397 179 81 4 chr1 9256349 9256622 -272937042 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 9257801 9258115 -272935549 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 9259536 9259595 -272934069 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 9259601 9259747 -272933917 - FRAM SINE Alu -11 165 8 265 298 46 53 chr1 9260513 9260644 -272933020 + MER5A DNA MER1_type 46 175 -14 1954 110 30 43 chr1 9260721 9261022 -272932642 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 9261435 9261576 -272932088 + FLAM_C SINE Alu 1 141 -2 1660 204 28 26 chr1 9261616 9262004 -272931660 + MLT2C1 LTR ERVL 1 389 -8 285 270 0 20 chr1 9462566 9462666 -272730998 + MLT1H LTR MaLR 368 465 -84 3503 85 4 2 chr1 9462917 9463388 -272730276 + LTR8 LTR ERV1 1 472 -219 8223 42 4 1 chr1 9463488 9464551 -272729113 - L1P LINE L1 -794 5352 4287 696 332 174 31 chr1 9465046 9465863 -272727801 + L3 LINE CR1 211 1144 -433 354 329 55 24 chr1 9466172 9466336 -272727328 - L1M LINE L1 -2385 5423 5255 335 264 127 10 chr1 9466558 9466755 -272726909 - L1M4 LINE L1 -1437 4709 4490 2028 128 0 24 chr1 9467245 9467541 -272726123 + AluSx SINE Alu 1 289 -23 253 191 191 0 chr1 9468369 9468453 -272725211 + MIR3 SINE MIR 108 207 -1 410 179 51 90 chr1 9471100 9471256 -272722408 - MER97a DNA MER1_type? -744 150 1 2230 121 52 100 chr1 9471422 9471884 -272721780 + Tigger3(Golem) DNA MER2_type 2578 3017 -12 266 203 34 0 chr1 9471894 9471953 -272721711 + LTR67 LTR ERVL 114 174 -383 1440 151 95 48 chr1 9471962 9472320 -272721344 - THE1C LTR MaLR 0 375 1 286 228 43 11 chr1 9472495 9472587 -272721077 + LTR67 LTR ERVL 439 533 -24 1694 117 117 0 chr1 9473879 9474009 -272719655 + AluSx SINE Alu 1 114 -198 1992 153 0 0 chr1 9474009 9474297 -272719367 + AluSg SINE Alu 9 296 -14 1694 117 117 0 chr1 9474297 9474415 -272719249 + AluSx SINE Alu 114 278 -34 660 195 17 0 chr1 9474419 9474593 -272719071 + GA-rich Low_complexity Low_complexity 4 180 0 273 167 0 21 chr1 9474721 9474769 -272718895 - Alu SINE Alu -253 48 2 2172 122 0 20 chr1 9474895 9475198 -272718466 - AluSx SINE Alu -15 297 1 1001 132 38 0 chr1 9475945 9476104 -272717560 - Tigger4(Zombi) DNA MER2_type -2566 165 1 2385 93 3 0 chr1 9476484 9476786 -272716878 - AluSp SINE Alu -10 303 1 2325 102 0 0 chr1 9477768 9478061 -272715603 + AluSx SINE Alu 1 293 -19 283 218 0 0 chr1 9478219 9478274 -272715390 + Tigger5 DNA MER2_type 3 57 -2266 822 168 0 0 chr1 9478341 9478466 -272715198 + FLAM_C SINE Alu 2 126 -7 2078 136 0 17 chr1 9478481 9478617 -272715047 + AluSx SINE Alu 1 138 -164 2348 94 0 16 chr1 9478617 9478754 -272714910 + AluSq SINE Alu 1 139 -174 2363 112 0 0 chr1 9478754 9479066 -272714598 + AluSq SINE Alu 1 312 -1 2348 94 0 16 chr1 9479066 9479237 -272714427 + AluSq SINE Alu 139 304 -9 2078 136 0 17 chr1 9479237 9479402 -272714262 + AluSx SINE Alu 138 297 -5 785 203 26 0 chr1 9479409 9479562 -272714102 + FRAM SINE Alu 5 161 -5 1173 208 32 70 chr1 9480037 9480350 -272713314 - AluSx SINE Alu 0 302 2 792 180 66 28 chr1 9480520 9480731 -272712933 - MER20 DNA MER1_type 0 219 1 1859 136 3 42 chr1 9480937 9481245 -272712419 + AluJb SINE Alu 1 296 -16 2463 88 0 19 chr1 9481403 9481721 -272711943 + AluSq SINE Alu 1 312 -1 257 343 59 29 chr1 9482280 9482382 -272711282 - L2 LINE L2 -42 3271 3167 2479 49 3 0 chr1 9482446 9482732 -272710932 - AluY SINE Alu -11 300 14 3317 145 35 88 chr1 9482762 9483017 -272710647 - L1MB3 LINE L1 0 6183 5916 1953 162 0 3 chr1 9483017 9483320 -272710344 + AluJb SINE Alu 1 302 -10 3317 145 35 88 chr1 9483320 9483333 -272710331 - L1MB3 LINE L1 -267 5916 5904 2123 128 17 0 chr1 9483333 9483621 -272710043 + AluSx SINE Alu 1 293 -19 2542 62 0 3 chr1 9483630 9483938 -272709726 + AluY SINE Alu 1 307 -4 3317 145 35 88 chr1 9483938 9484430 -272709234 - L1MB3 LINE L1 -287 5896 5453 348 266 66 49 chr1 9484478 9484704 -272708960 - L1MC5 LINE L1 -50 7911 7682 1964 162 3 3 chr1 9484741 9485049 -272708615 + AluJb SINE Alu 1 308 -4 225 188 47 47 chr1 9485049 9485125 -272708539 - L1MC5 LINE L1 -272 7689 7611 823 249 80 10 chr1 9485286 9485587 -272708077 - L1M4 LINE L1 -2096 4050 3729 2196 54 4 36 chr1 9485896 9486174 -272707490 + AluY SINE Alu 1 269 -42 2460 70 3 3 chr1 9486390 9486688 -272706976 - AluSp SINE Alu -15 298 1 2054 148 0 10 chr1 9487064 9487369 -272706295 - AluJb SINE Alu -10 302 1 2342 109 3 0 chr1 9487377 9487688 -272705976 - AluSx SINE Alu 0 312 1 264 266 43 53 chr1 9488216 9488310 -272705354 + MIR3 SINE MIR 4 96 -112 582 229 70 75 chr1 9488366 9488482 -272705182 + MIR SINE MIR 46 161 -101 2243 79 11 4 chr1 9488482 9488761 -272704903 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr1 9488764 9488788 -272704876 + (TAA)n Simple_repeat Simple_repeat 3 26 0 582 229 70 75 chr1 9488788 9488868 -272704796 + MIR SINE MIR 163 245 -17 2499 73 0 13 chr1 9488938 9489252 -272704412 + AluY SINE Alu 1 310 -1 2331 112 6 6 chr1 9489257 9489570 -272704094 + AluSp SINE Alu 1 313 0 2164 101 7 32 chr1 9489585 9489893 -272703771 + AluSx SINE Alu 5 304 -8 251 313 94 16 chr1 9489975 9490103 -272703561 - MIR SINE MIR -46 216 79 1864 158 0 24 chr1 9490103 9490400 -272703264 + AluJo SINE Alu 1 290 -22 2199 124 0 0 chr1 9490763 9491053 -272702611 - AluSx SINE Alu -22 290 1 623 243 29 0 chr1 9491060 9491200 -272702464 - MIR SINE MIR -105 157 14 451 219 187 0 chr1 9491545 9491668 -272701996 + MIR SINE MIR 57 202 -60 2278 125 3 0 chr1 9491668 9491973 -272701691 + AluSx SINE Alu 1 306 -6 303 197 127 0 chr1 9494108 9494179 -272699485 - MIR SINE MIR -90 172 93 336 282 168 24 chr1 9495146 9495355 -272698309 + MIR SINE MIR 12 250 -12 288 304 112 50 chr1 9496311 9496344 -272697320 - MIR SINE MIR -76 186 156 2132 137 0 3 chr1 9496344 9496644 -272697020 + AluSx SINE Alu 1 299 -13 288 304 112 50 chr1 9496644 9496771 -272696893 - MIR SINE MIR -106 156 16 180 194 97 48 chr1 9497384 9497446 -272696218 + MIR SINE MIR 14 78 -184 1847 96 65 55 chr1 9497498 9497646 -272696018 + AluSx SINE Alu 1 146 -166 1825 100 0 41 chr1 9497646 9497915 -272695749 + AluSx SINE Alu 44 301 -11 1847 96 65 55 chr1 9497915 9498059 -272695605 + AluSx SINE Alu 146 296 -16 2573 59 10 0 chr1 9498075 9498378 -272695286 + AluY SINE Alu 1 306 -5 739 167 9 0 chr1 9498378 9498492 -272695172 - AluJb SINE Alu -196 116 2 746 159 61 12 chr1 9498568 9498731 -272694933 - L1MB7 LINE L1 -10 6174 6004 2280 107 0 0 chr1 9501567 9501858 -272691806 + AluSx SINE Alu 1 291 -21 525 284 98 42 chr1 9502073 9502337 -272691327 + L2 LINE L2 3035 3313 0 2201 124 3 0 chr1 9502455 9502761 -272690903 - AluSx SINE Alu -5 307 1 875 175 0 0 chr1 9502825 9502968 -272690696 + FLAM_C SINE Alu 1 143 0 192 277 0 46 chr1 9503019 9503084 -272690580 + L2 LINE L2 604 665 -2649 2658 44 0 25 chr1 9503905 9504221 -272689443 + AluY SINE Alu 1 308 -3 2450 100 0 0 chr1 9504372 9504681 -272688983 + AluSc SINE Alu 1 309 0 2063 147 0 10 chr1 9504689 9504995 -272688669 + AluJb SINE Alu 1 303 -9 2460 70 3 3 chr1 9505371 9505669 -272687995 + AluSp SINE Alu 1 298 -15 719 205 0 0 chr1 9505796 9505913 -272687751 - FLAM_C SINE Alu -25 118 2 2289 96 3 3 chr1 9506052 9506344 -272687320 + AluSp SINE Alu 1 292 -21 437 136 0 0 chr1 9506355 9506421 -272687243 + Alu SINE Alu 236 301 -11 3440 143 23 54 chr1 9506457 9507054 -272686610 - L1MB7 LINE L1 0 6184 5609 2245 103 3 0 chr1 9507054 9507344 -272686320 - AluSx SINE Alu -21 291 1 3440 143 23 54 chr1 9507344 9507411 -272686253 - L1MB7 LINE L1 -575 5609 5541 1769 165 38 3 chr1 9508078 9508369 -272685295 - AluJo SINE Alu -11 301 1 1548 187 0 15 chr1 9508607 9508869 -272684795 - AluJb SINE Alu -54 258 1 2347 92 0 10 chr1 9508874 9509179 -272684485 - AluY SINE Alu -9 302 1 421 147 27 0 chr1 9509388 9509463 -272684201 - MER45A DNA AcHobo 0 178 102 2020 161 0 3 chr1 9509470 9509781 -272683883 - AluSx SINE Alu -2 310 1 2142 124 3 3 chr1 9509815 9510114 -272683550 - AluSx SINE Alu -13 299 1 2405 91 3 7 chr1 9510123 9510432 -272683232 - AluSp SINE Alu -5 308 1 2256 119 0 0 chr1 9510839 9511141 -272682523 - AluY SINE Alu -9 302 1 230 26 26 26 chr1 9512176 9512215 -272681449 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2168 110 0 0 chr1 9512215 9512488 -272681176 - AluSx SINE Alu -24 288 13 2124 118 3 0 chr1 9512500 9512788 -272680876 - AluSx SINE Alu -13 299 11 222 37 0 0 chr1 9512792 9512819 -272680845 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 1305 123 29 84 chr1 9513116 9513295 -272680369 + MLT1B LTR MaLR 4 211 -256 2488 77 3 0 chr1 9513295 9513594 -272680070 + AluY SINE Alu 2 301 -10 1305 123 29 84 chr1 9513594 9513725 -272679939 + MLT1B LTR MaLR 211 348 -119 649 142 11 40 chr1 9513794 9513970 -272679694 + GA-rich Low_complexity Low_complexity 2 172 0 2123 135 0 19 chr1 9513977 9514295 -272679369 + AluSx SINE Alu 1 312 0 2482 77 0 6 chr1 9514300 9514613 -272679051 + AluY SINE Alu 1 311 0 346 129 65 0 chr1 9514638 9514700 -272678964 - AluJo SINE Alu 0 302 237 932 181 139 0 chr1 9514701 9514867 -272678797 - AluJo SINE Alu -123 189 1 698 175 0 0 chr1 9514869 9514983 -272678681 + MLT1B LTR MaLR 275 388 -2 286 270 191 15 chr1 9515398 9515434 -272678230 - MIR SINE MIR -63 145 117 2099 148 0 3 chr1 9515434 9515731 -272677933 - AluJo SINE Alu -16 296 1 286 270 191 15 chr1 9515731 9515857 -272677807 - MIR SINE MIR -91 117 14 564 103 0 41 chr1 9515909 9516006 -272677658 + AluSq SINE Alu 1 93 -219 768 266 152 36 chr1 9516577 9516777 -272676887 - L2 LINE L2 0 3313 3138 2053 109 0 4 chr1 9516777 9517044 -272676620 + AluSx SINE Alu 1 266 -46 768 266 152 36 chr1 9517044 9517290 -272676374 - L2 LINE L2 -175 3138 2815 713 213 18 7 chr1 9517539 9517817 -272675847 - MLT1I LTR MaLR -7 402 1 210 71 0 0 chr1 9519865 9519893 -272673771 + (TCC)n Simple_repeat Simple_repeat 3 30 0 306 326 123 9 chr1 9520446 9520673 -272672991 - MIR SINE MIR 0 262 10 1742 98 0 0 chr1 9520952 9521166 -272672498 + AluSq SINE Alu 88 301 -12 258 116 0 0 chr1 9521798 9521841 -272671823 + (GA)n Simple_repeat Simple_repeat 2 44 0 469 244 85 18 chr1 9522673 9522837 -272670827 + L3 LINE CR1 1337 1511 -66 261 234 0 16 chr1 9525897 9525961 -272667703 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 2342 115 0 6 chr1 9526679 9526991 -272666673 - AluSg SINE Alu 0 310 1 5374 206 83 27 chr1 9529127 9529411 -272664253 + L1M4 LINE L1 3657 3923 -2223 2313 88 27 3 chr1 9529411 9529706 -272663958 + AluSq SINE Alu 1 302 -11 5374 206 83 27 chr1 9529706 9530002 -272663662 + L1M4 LINE L1 3923 4201 -1945 2098 150 0 0 chr1 9530002 9530296 -272663368 - AluJb SINE Alu -18 294 1 5374 206 83 27 chr1 9530296 9531046 -272662618 + L1M4 LINE L1 4201 5089 -1057 1569 175 6 48 chr1 9531046 9531228 -272662436 - AluJo SINE Alu -9 303 138 1957 122 0 7 chr1 9531228 9531498 -272662166 + AluSx SINE Alu 45 312 0 1569 175 6 48 chr1 9531498 9531630 -272662034 - AluJo SINE Alu -174 138 2 5374 206 83 27 chr1 9531630 9531831 -272661833 + L1M4 LINE L1 5089 5277 -869 1424 90 0 5 chr1 9531831 9532019 -272661645 - AluSg/x SINE Alu -10 302 116 645 208 87 63 chr1 9533024 9533231 -272660433 - L2 LINE L2 0 3313 3102 2403 55 41 3 chr1 9533249 9533541 -272660123 + AluY SINE Alu 1 303 -8 2264 97 0 0 chr1 9533552 9533831 -272659833 + AluSg SINE Alu 1 279 -31 880 266 38 26 chr1 9533860 9534127 -272659537 - L2 LINE L2 -495 2819 2550 2279 106 0 3 chr1 9534436 9534739 -272658925 + AluSx SINE Alu 1 302 -10 206 318 45 0 chr1 9534792 9534858 -272658806 - MIR3 SINE MIR -11 197 129 227 385 9 0 chr1 9534967 9535076 -272658588 + L2 LINE L2 3194 3303 -10 2404 99 0 3 chr1 9535328 9535632 -272658032 - AluSq SINE Alu -10 303 1 777 285 61 4 chr1 9535635 9535881 -272657783 + MIR SINE MIR 3 262 0 271 247 116 41 chr1 9535875 9536021 -272657643 + L2 LINE L2 3155 3311 -2 * 465 285 153 65 chr1 9536003 9536178 -272657486 - L2 LINE L2 -4 3309 3151 2467 56 0 26 chr1 9536178 9536481 -272657183 + AluY SINE Alu 1 295 -16 465 285 153 65 chr1 9536481 9536705 -272656959 - L2 LINE L2 -162 3151 2875 624 269 71 10 chr1 9537838 9538035 -272655629 - MIR SINE MIR -52 210 2 380 214 60 34 chr1 9538136 9538253 -272655411 + MIR SINE MIR 50 169 -93 274 388 0 0 chr1 9538735 9538838 -272654826 - L2 LINE L2 0 3272 3170 2477 86 0 0 chr1 9538838 9539141 -272654523 + AluY SINE Alu 1 303 -8 1557 154 39 27 chr1 9541522 9541782 -272651882 - AluJb SINE Alu -49 263 1 2155 121 17 0 chr1 9541815 9542112 -272651552 - AluSx SINE Alu -10 302 1 258 32 0 0 chr1 9542113 9542144 -272651520 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2109 112 4 4 chr1 9542144 9542422 -272651242 - AluSc SINE Alu -28 281 4 2456 88 0 0 chr1 9542425 9542730 -272650934 - AluSx SINE Alu -7 305 1 340 182 76 0 chr1 9542769 9542835 -272650829 - MER2 DNA MER2_type -1 344 274 499 110 0 0 chr1 9542835 9542917 -272650747 + L1PB1 LINE L1 6069 6150 -1 21 82 0 0 chr1 9542917 9542966 -272650698 + AT_rich Low_complexity Low_complexity 1 49 0 1271 135 19 5 chr1 9543016 9543223 -272650441 - MER2 DNA MER2_type -135 210 1 514 277 55 25 chr1 9543226 9543355 -272650309 - L1M4 LINE L1 -812 5334 5195 2198 128 0 0 chr1 9543355 9543660 -272650004 - AluSc SINE Alu -4 305 1 514 277 55 25 chr1 9543660 9543732 -272649932 - L1M4 LINE L1 -951 5195 5127 2254 101 16 10 chr1 9543757 9544065 -272649599 - AluSg SINE Alu 0 310 1 1414 175 15 94 chr1 9544068 9544399 -272649265 - AluJo SINE Alu -7 305 1 2590 68 0 0 chr1 9544421 9544731 -272648933 - AluY SINE Alu -1 310 1 2156 103 3 29 chr1 9544734 9544911 -272648753 - AluSg SINE Alu -6 304 137 2366 108 0 0 chr1 9544911 9545217 -272648447 - AluSg SINE Alu -4 306 1 2156 103 3 29 chr1 9545217 9545351 -272648313 - AluSg SINE Alu -173 137 1 1074 103 0 0 chr1 9545351 9545487 -272648177 - AluSq/x SINE Alu -177 136 1 652 283 123 24 chr1 9545588 9545970 -272647694 + L1MC4 LINE L1 7356 7775 -267 1794 142 17 30 chr1 9545976 9546107 -272647557 + AluSx SINE Alu 1 132 -180 2320 88 3 10 chr1 9546107 9546403 -272647261 + AluSg SINE Alu 1 294 -16 2026 138 10 0 chr1 9546406 9546695 -272646969 + AluSx SINE Alu 1 292 -20 2421 90 3 0 chr1 9546697 9546998 -272646666 + AluY SINE Alu 1 302 -9 1794 142 17 30 chr1 9546998 9547155 -272646509 + AluSx SINE Alu 135 292 -20 1522 168 0 0 chr1 9547155 9547381 -272646283 + AluJb SINE Alu 80 305 -7 1081 173 0 0 chr1 9547383 9547556 -272646108 + AluJb SINE Alu 136 308 -4 655 252 53 68 chr1 9547566 9547832 -272645832 + L1MC4 LINE L1 7781 8042 0 1143 129 12 12 chr1 9549292 9549463 -272644201 - AluJo/FRAM SINE Alu -9 303 133 2604 50 0 0 chr1 9549464 9549761 -272643903 - AluY SINE Alu -12 299 3 357 161 0 0 chr1 9549799 9549855 -272643809 + AluS SINE Alu 2 57 -243 701 138 124 83 chr1 9549955 9550055 -272643609 + L1M4 LINE L1 3543 3637 -2509 2357 88 0 3 chr1 9550055 9550351 -272643313 - AluSp SINE Alu -18 295 1 701 138 124 83 chr1 9550351 9550467 -272643197 + L1M4 LINE L1 3637 3768 -2378 892 258 28 14 chr1 9550484 9550697 -272642967 - MIR SINE MIR -44 218 3 275 349 77 26 chr1 9550715 9550910 -272642754 + L3 LINE CR1 1371 1575 -2 279 282 0 0 chr1 9551217 9551288 -272642376 + MIR3 SINE MIR 124 194 -14 2129 136 7 10 chr1 9551309 9551618 -272642046 - AluJb SINE Alu -4 308 1 2244 124 3 0 chr1 9552016 9552315 -272641349 + AluSx SINE Alu 1 300 -12 2532 57 0 7 chr1 9552576 9552877 -272640787 + AluSc SINE Alu 1 299 -10 1696 170 47 0 chr1 9553061 9553338 -272640326 + AluJb SINE Alu 4 293 -19 2217 107 13 0 chr1 9553338 9553637 -272640027 + AluSg SINE Alu 1 303 -7 1287 148 106 68 chr1 9553881 9554080 -272639584 + Charlie1 DNA MER1_type 2345 2535 -226 2429 103 0 0 chr1 9554080 9554382 -272639282 + AluSx SINE Alu 1 302 -10 1287 148 106 68 chr1 9554382 9554503 -272639161 + Charlie1 DNA MER1_type 2535 2685 -76 2012 131 13 45 chr1 9554503 9554817 -272638847 + AluSq SINE Alu 1 304 -9 1287 148 106 68 chr1 9554817 9554893 -272638771 + Charlie1 DNA MER1_type 2685 2757 -4 2621 74 0 0 chr1 9555092 9555403 -272638261 + AluY SINE Alu 1 311 0 346 143 86 0 chr1 9555637 9555707 -272637957 - MER103 DNA DNA -82 84 9 2228 119 3 7 chr1 9558500 9558802 -272634862 - AluSx SINE Alu -6 306 6 276 170 0 19 chr1 9559129 9559182 -272634482 + AluJb SINE Alu 85 136 -166 2439 93 0 0 chr1 9559182 9559492 -272634172 + AluY SINE Alu 1 310 -1 1079 76 0 0 chr1 9559650 9559781 -272633883 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 9559784 9560092 -272633572 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 9560112 9560134 -272633530 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 9560207 9560315 -272633349 + FLAM_A SINE Alu 35 142 0 1985 131 48 3 chr1 9560326 9560617 -272633047 + AluSx SINE Alu 1 304 -8 2242 119 0 3 chr1 9561728 9562030 -272631634 + AluSx SINE Alu 1 301 -11 2062 115 0 36 chr1 9562030 9562144 -272631520 + AluSc SINE Alu 1 118 -191 2342 74 0 27 chr1 9562144 9562441 -272631223 + AluSc SINE Alu 1 289 -20 2062 115 0 36 chr1 9562441 9562631 -272631033 + AluSc SINE Alu 118 294 -15 1767 153 0 80 chr1 9562775 9563101 -272630563 + AluJb SINE Alu 1 300 -12 1751 148 3 68 chr1 9563485 9563615 -272630049 + AluSx SINE Alu 7 144 -168 2387 89 3 3 chr1 9563615 9563917 -272629747 + AluSx SINE Alu 1 302 -10 1751 148 3 68 chr1 9563917 9564110 -272629554 + AluSx SINE Alu 144 309 -3 965 154 49 6 chr1 9564110 9564272 -272629392 + AluSq SINE Alu 134 302 -11 2484 46 0 0 chr1 9564444 9564766 -272628898 - AluY SINE Alu 0 322 1 201 158 0 0 chr1 9564955 9564993 -272628671 + A-rich Low_complexity Low_complexity 1 38 0 240 127 0 175 chr1 9564993 9565056 -272628608 + MLT1H LTR MaLR 498 549 0 574 346 72 33 chr1 9565059 9565663 -272628001 + L2 LINE L2 2650 3270 -2 1045 175 0 0 chr1 9566024 9566190 -272627474 + AluJb SINE Alu 134 299 -13 2311 106 6 3 chr1 9566232 9566543 -272627121 + AluSx SINE Alu 1 312 0 327 146 0 0 chr1 9566927 9566982 -272626682 + (TC)n Simple_repeat Simple_repeat 2 56 0 2183 90 11 4 chr1 9567479 9567781 -272625883 - AluSg SINE Alu 0 304 1 29 0 0 0 chr1 9567783 9567812 -272625852 + AT_rich Low_complexity Low_complexity 1 29 0 1325 134 15 0 chr1 9567832 9568034 -272625630 - AluSg/x SINE Alu -3 309 105 1243 138 5 5 chr1 9568140 9568329 -272625335 + AluSg/x SINE Alu 112 300 -12 1355 191 7 28 chr1 9569370 9569488 -272624176 + AluJb SINE Alu 21 140 -172 2201 120 0 13 chr1 9569488 9569788 -272623876 + AluSx SINE Alu 1 296 -16 1355 191 7 28 chr1 9569788 9569952 -272623712 + AluJb SINE Alu 140 297 -15 2347 109 6 3 chr1 9570054 9570365 -272623299 + AluSx SINE Alu 1 312 0 2197 113 3 3 chr1 9570427 9570720 -272622944 + AluSx SINE Alu 7 299 -13 967 320 106 18 chr1 9571076 9571632 -272622032 - L2 LINE L2 -338 2976 2372 2263 62 11 0 chr1 9571637 9571913 -272621751 - AluSp SINE Alu -9 304 26 1394 158 26 15 chr1 9572013 9572279 -272621385 + L1MB7 LINE L1 5742 6010 -174 2132 103 0 23 chr1 9572321 9572650 -272621014 + AluY SINE Alu 1 311 0 642 162 80 32 chr1 9572667 9572681 -272620983 + L1M4 LINE L1 5411 5423 -745 2383 78 0 36 chr1 9572681 9572990 -272620674 + AluY SINE Alu 1 298 -13 2041 110 0 38 chr1 9572990 9573309 -272620355 + AluSx SINE Alu 1 308 0 642 162 80 32 chr1 9573309 9573446 -272620218 + L1M4 LINE L1 5422 5566 -602 1323 305 106 24 chr1 9573446 9574264 -272619400 + L2 LINE L2 2375 3278 -35 299 240 211 10 chr1 9574271 9574375 -272619289 - MIR SINE MIR -62 146 22 2151 104 0 77 chr1 9575791 9576128 -272617536 + AluSx SINE Alu 1 311 -1 306 214 29 68 chr1 9577263 9577366 -272616298 + MIR SINE MIR 45 143 -65 832 128 8 0 chr1 9577749 9577866 -272615798 - FLAM_C SINE Alu -15 118 1 454 280 63 46 chr1 9577878 9578053 -272615611 - MER5A DNA MER1_type -6 183 6 2504 58 0 0 chr1 9579819 9580111 -272613553 - AluY SINE Alu -19 292 1 2286 121 0 0 chr1 9580430 9580728 -272612936 + AluSx SINE Alu 1 298 -14 2553 70 0 13 chr1 9580802 9581117 -272612547 + AluY SINE Alu 1 311 0 233 317 80 66 chr1 9581810 9581895 -272611769 - L2 LINE L2 -506 2808 2726 2061 113 49 0 chr1 9581895 9582179 -272611485 + AluSx SINE Alu 1 298 -14 233 317 80 66 chr1 9582179 9582443 -272611221 - L2 LINE L2 -588 2726 2454 2026 148 0 26 chr1 9584105 9584415 -272609249 - AluSx SINE Alu -9 303 2 2061 131 0 25 chr1 9584466 9584780 -272608884 - AluJo SINE Alu -6 306 1 342 120 0 0 chr1 9584844 9584919 -272608745 - Alu SINE Alu 0 307 233 1180 124 22 16 chr1 9584919 9585104 -272608560 - AluSp SINE Alu -127 186 1 1132 124 0 30 chr1 9585106 9585297 -272608367 - AluSg/x SINE Alu 0 306 121 2302 99 0 34 chr1 9585309 9585631 -272608033 - AluY SINE Alu 0 311 1 1567 213 17 15 chr1 9585634 9586098 -272607566 - L1M4 LINE L1 -2803 3343 2879 2353 96 0 3 chr1 9586105 9586407 -272607257 - AluSc SINE Alu -7 302 2 2519 66 0 0 chr1 9586408 9586709 -272606955 - AluY SINE Alu -10 301 1 1419 141 52 83 chr1 9586709 9586874 -272606790 - L1MCa LINE L1 -6090 336 184 1723 174 3 10 chr1 9586874 9587172 -272606492 - AluJb SINE Alu -16 296 1 1419 141 52 83 chr1 9587172 9587333 -272606331 - L1MCa LINE L1 -6242 184 20 2413 165 44 42 chr1 9587342 9587868 -272605796 - L1MB5 LINE L1 -41 6133 5607 365 165 0 25 chr1 9587885 9587964 -272605700 + C-rich Low_complexity Low_complexity 1 77 0 1771 102 0 17 chr1 9587973 9588209 -272605455 - AluSx SINE Alu -32 280 49 272 197 132 13 chr1 9588209 9588285 -272605379 - L1MB5 LINE L1 -555 5619 5535 203 274 8 65 chr1 9588314 9588411 -272605253 - L3 LINE CR1 -340 1237 1147 1615 177 13 33 chr1 9588411 9588716 -272604948 - AluJo SINE Alu -13 299 1 203 274 8 65 chr1 9588716 9588742 -272604922 - L3 LINE CR1 -430 1147 1121 360 200 32 42 chr1 9588771 9588866 -272604798 - FLAM_A SINE Alu -4 129 36 518 334 167 43 chr1 9588982 9589363 -272604301 - L3 LINE CR1 -608 969 518 2462 55 3 29 chr1 9589363 9589673 -272603991 - AluY SINE Alu -9 302 1 518 334 167 43 chr1 9589673 9589758 -272603906 - L3 LINE CR1 -1059 518 445 2124 114 20 3 chr1 9589778 9590084 -272603580 - AluSx SINE Alu -1 311 1 1806 143 7 36 chr1 9590089 9590396 -272603268 - AluJb SINE Alu -14 298 1 2468 81 0 0 chr1 9590602 9590900 -272602764 + AluSp SINE Alu 1 298 -15 2066 142 0 0 chr1 9591459 9591747 -272601917 + AluSx SINE Alu 1 288 -24 2363 94 0 3 chr1 9592755 9593052 -272600612 + AluSx SINE Alu 1 296 -16 213 65 0 0 chr1 9593845 9593876 -272599788 + (TTG)n Simple_repeat Simple_repeat 2 32 0 758 127 8 34 chr1 9593883 9594001 -272599663 - AluSg/x SINE Alu -28 282 168 228 235 26 52 chr1 9594009 9594124 -272599540 - AluSp SINE Alu -108 195 84 2196 102 14 0 chr1 9594541 9594824 -272598840 + AluSp SINE Alu 3 289 -24 316 182 0 4 chr1 9595980 9596050 -272597614 + FLAM_A SINE Alu 1 52 -80 912 126 0 0 chr1 9596100 9596227 -272597437 - FLAM_C SINE Alu -16 127 1 1097 174 0 0 chr1 9596293 9596471 -272597193 - FRAM SINE Alu -1 175 1 650 310 92 38 chr1 9596609 9596900 -272596764 - MARNA DNA Mariner -59 527 253 2220 98 10 26 chr1 9596900 9597206 -272596458 - AluSg SINE Alu -9 301 1 2402 104 3 0 chr1 9597208 9597517 -272596147 - AluSq SINE Alu -3 310 1 650 310 92 38 chr1 9597517 9597593 -272596071 - MARNA DNA Mariner -333 253 137 2119 125 0 0 chr1 9597829 9598138 -272595526 + AluSg SINE Alu 1 309 0 1659 95 151 0 chr1 9598976 9599228 -272594436 + AluSg SINE Alu 1 290 -20 2182 127 3 0 chr1 9599238 9599537 -272594127 + AluSp SINE Alu 1 300 -13 2232 131 0 0 chr1 9599537 9599835 -272593829 + AluSg SINE Alu 1 298 -12 2278 116 0 3 chr1 9599844 9600146 -272593518 + AluSx SINE Alu 1 301 -11 1743 146 0 4 chr1 9600146 9600405 -272593259 + AluSx SINE Alu 50 308 -4 2194 112 3 37 chr1 9600933 9601136 -272592528 - AluSq SINE Alu -2 311 122 2539 68 3 7 chr1 9601136 9601446 -272592218 - AluSx SINE Alu -3 309 1 2194 112 3 37 chr1 9601446 9601564 -272592100 - AluSq SINE Alu -191 122 1 2324 102 0 0 chr1 9601623 9601916 -272591748 - AluSc SINE Alu -16 293 1 467 225 0 115 chr1 9601995 9602058 -272591606 + HsTC2 DNA Tc2 1558 1627 -271 1694 175 28 3 chr1 9602058 9602343 -272591321 + AluJb SINE Alu 1 292 -20 467 225 0 115 chr1 9602343 9602461 -272591203 + HsTC2 DNA Tc2 1627 1718 -180 2461 94 0 0 chr1 9602461 9602769 -272590895 + AluSx SINE Alu 1 308 -4 1261 116 0 22 chr1 9602811 9602826 -272590838 + AluSc SINE Alu 120 134 -175 2386 98 3 0 chr1 9602826 9603123 -272590541 + AluSx SINE Alu 1 298 -14 1261 116 0 22 chr1 9603123 9603288 -272590376 + AluSc SINE Alu 134 296 -13 2137 110 10 7 chr1 9603290 9603580 -272590084 + AluY SINE Alu 3 293 -18 2350 110 0 3 chr1 9603728 9604038 -272589626 + AluSx SINE Alu 1 309 -3 736 112 32 8 chr1 9604325 9604450 -272589214 - AluY SINE Alu -171 140 13 1882 173 0 0 chr1 9604704 9605023 -272588641 + AluJb SINE Alu 1 312 0 2127 143 0 0 chr1 9605374 9605668 -272587996 - AluSx SINE Alu -14 298 5 2317 114 0 0 chr1 9606089 9606388 -272587276 + AluSx SINE Alu 2 300 -12 2193 109 0 56 chr1 9606723 9606861 -272586803 + AluSx SINE Alu 1 145 -167 207 100 0 0 chr1 9606861 9606891 -272586773 + (TA)n Simple_repeat Simple_repeat 1 30 0 2193 109 0 56 chr1 9606891 9607072 -272586592 + AluSx SINE Alu 145 302 -10 702 157 0 8 chr1 9607191 9607312 -272586352 - AluSg/x SINE Alu -5 307 188 1723 148 25 21 chr1 9607499 9607782 -272585882 - AluJb SINE Alu -28 284 1 1528 231 23 11 chr1 9608116 9608467 -272585197 - L2 LINE L2 -562 2752 2398 241 222 0 0 chr1 9608476 9608521 -272585143 + FRAM SINE Alu 4 48 -116 * 495 137 0 0 chr1 9608518 9608591 -272585073 - 7SK RNA RNA 0 193 121 721 142 0 16 chr1 9608628 9608755 -272584909 - 7SK RNA RNA -68 125 1 898 158 0 0 chr1 9608755 9608888 -272584776 + FRAM SINE Alu 34 166 -10 592 222 23 34 chr1 9608897 9609073 -272584591 - L2 LINE L2 -928 2386 2213 1283 214 34 34 chr1 9609073 9609396 -272584268 - MLT1B LTR MaLR 0 390 68 1903 164 31 0 chr1 9610020 9610312 -272583352 + AluJb SINE Alu 1 301 -11 2109 112 20 3 chr1 9610361 9610655 -272583009 - AluSg SINE Alu -11 299 1 2109 127 7 0 chr1 9610799 9611122 -272582542 - AluSx SINE Alu 0 325 1 724 200 0 0 chr1 9611402 9611527 -272582137 + FRAM SINE Alu 9 133 -43 551 130 176 0 chr1 9611677 9611785 -272581879 - AluJo SINE Alu -178 134 8 2525 57 0 3 chr1 9611800 9612101 -272581563 - AluSg SINE Alu -10 300 1 21 36 0 0 chr1 9613793 9613821 -272579843 + AT_rich Low_complexity Low_complexity 1 28 0 2325 92 0 16 chr1 9613856 9614159 -272579505 + AluSx SINE Alu 1 298 -14 2491 68 3 0 chr1 9614276 9614572 -272579092 + AluSc SINE Alu 1 297 -12 2079 141 16 0 chr1 9614578 9614883 -272578781 + AluSx SINE Alu 1 310 -2 291 292 299 0 chr1 9614944 9615088 -272578576 - L2 LINE L2 -214 3058 2872 1011 66 8 0 chr1 9615452 9615573 -272578091 + AluY SINE Alu 2 123 -188 1892 49 0 13 chr1 9615589 9615814 -272577850 + AluY SINE Alu 1 222 -89 1921 178 0 0 chr1 9616732 9617041 -272576623 - AluSx SINE Alu -3 309 1 400 308 116 61 chr1 9617046 9617226 -272576438 + L1M4 LINE L1 4607 4776 -1370 1400 114 137 107 chr1 9617226 9617525 -272576139 + AluSg SINE Alu 1 308 -2 * 1846 148 58 0 chr1 9617524 9617802 -272575862 + AluSx SINE Alu 1 294 -18 400 308 116 61 chr1 9617525 9618215 -272575449 + L1M4 LINE L1 4776 5233 -913 680 129 11 0 chr1 9618228 9618321 -272575343 + AluJb SINE Alu 195 288 -24 1773 170 25 0 chr1 9618425 9618708 -272574956 + AluJb SINE Alu 1 290 -22 2019 148 0 16 chr1 9619014 9619324 -272574340 - AluJo SINE Alu -7 305 1 1750 128 84 7 chr1 9619327 9619469 -272574195 - AluSx SINE Alu -17 295 165 2456 76 3 0 chr1 9619469 9619772 -272573892 - AluY SINE Alu -7 304 1 1750 128 84 7 chr1 9619772 9619903 -272573761 - AluSx SINE Alu -147 165 1 1131 53 0 8 chr1 9619903 9620036 -272573628 - AluY SINE Alu -179 132 1 780 173 15 8 chr1 9620066 9620199 -272573465 + AluJo SINE Alu 3 136 -176 189 330 22 44 chr1 9620512 9620603 -272573061 + MIR SINE MIR 27 115 -147 2339 101 3 0 chr1 9620740 9621036 -272572628 - AluSx SINE Alu -15 297 1 2179 126 7 0 chr1 9621426 9621736 -272571928 - AluSx SINE Alu 0 312 1 677 126 0 0 chr1 9621741 9621836 -272571828 - FLAM_C SINE Alu -14 129 35 787 216 20 102 chr1 9622551 9622632 -272571032 + MIR SINE MIR 7 93 -169 2153 127 7 10 chr1 9622632 9622939 -272570725 - AluSx SINE Alu -6 306 1 1804 187 10 3 chr1 9622949 9623259 -272570405 - AluJb SINE Alu 0 312 1 787 216 20 102 chr1 9623259 9623411 -272570253 + MIR SINE MIR 102 231 -31 231 114 0 0 chr1 9623568 9623603 -272570061 + (TA)n Simple_repeat Simple_repeat 1 35 0 2366 75 0 13 chr1 9623603 9623908 -272569756 - AluY SINE Alu -10 301 1 2451 60 0 80 chr1 9624169 9624505 -272569159 - AluSq SINE Alu -4 309 1 2175 108 0 20 chr1 9624517 9624822 -272568842 - AluSq SINE Alu -14 299 1 1229 163 8 67 chr1 9625233 9625313 -272568351 + AluJo SINE Alu 63 146 -166 2384 82 3 10 chr1 9625313 9625641 -272568023 + AluY SINE Alu 1 311 0 1229 163 8 67 chr1 9625641 9625800 -272567864 + AluJo SINE Alu 146 288 -24 2171 92 7 3 chr1 9625856 9626162 -272567502 + AluSq SINE Alu 1 307 0 546 241 152 7 chr1 9626897 9627042 -272566622 - MIR3 SINE MIR -11 197 32 3084 138 23 32 chr1 9627675 9627981 -272565683 - L1MB5 LINE L1 -3 6171 5871 2045 125 44 7 chr1 9627981 9628277 -272565387 - AluSq SINE Alu -4 309 3 3084 138 23 32 chr1 9628277 9628526 -272565138 - L1MB5 LINE L1 -303 5871 5621 2205 91 14 11 chr1 9628526 9628843 -272564821 - AluSp SINE Alu 0 318 1 2116 119 31 0 chr1 9628900 9629194 -272564470 + AluSg SINE Alu 1 303 -7 1685 168 31 3 chr1 9629273 9629559 -272564105 + AluSx SINE Alu 2 295 -17 448 271 43 15 chr1 9629703 9629876 -272563788 + MIR SINE MIR 42 213 -49 2441 64 27 0 chr1 9630687 9630982 -272562682 + AluY SINE Alu 1 303 -8 2247 100 4 0 chr1 9630989 9631269 -272562395 + AluSg SINE Alu 9 289 -21 23 0 0 0 chr1 9631436 9631459 -272562205 + AT_rich Low_complexity Low_complexity 1 23 0 1996 67 49 53 chr1 9631531 9631838 -272561826 - AluSp SINE Alu 0 308 3 275 170 0 19 chr1 9632163 9632216 -272561448 + AluJb SINE Alu 85 136 -166 2310 84 0 0 chr1 9632216 9632530 -272561134 + AluY SINE Alu 1 314 0 1069 76 0 0 chr1 9632685 9632816 -272560848 + AluSg1 SINE Alu 1 131 -178 2254 120 3 0 chr1 9632819 9633127 -272560537 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 9633147 9633169 -272560495 + AT_rich Low_complexity Low_complexity 1 22 0 708 139 0 0 chr1 9633242 9633350 -272560314 + FLAM_A SINE Alu 35 142 0 1989 127 48 3 chr1 9633359 9633650 -272560014 + AluSx SINE Alu 1 304 -8 2242 119 0 3 chr1 9634761 9635063 -272558601 + AluSx SINE Alu 1 301 -11 885 175 121 0 chr1 9635063 9635229 -272558435 + AluYb8 SINE Alu 1 186 -132 1813 180 0 0 chr1 9635369 9635658 -272558006 - AluSx SINE Alu -23 289 1 396 304 116 62 chr1 9635663 9635843 -272557821 + L1M4 LINE L1 4607 4776 -1370 1411 113 141 100 chr1 9635843 9636134 -272557530 + AluSg SINE Alu 1 303 -7 1846 148 58 0 chr1 9636134 9636411 -272557253 + AluSx SINE Alu 1 294 -18 396 304 116 62 chr1 9636411 9636824 -272556840 + L1M4 LINE L1 4775 5233 -913 680 129 11 0 chr1 9636837 9636930 -272556734 + AluJb SINE Alu 195 288 -24 1773 170 25 0 chr1 9637034 9637317 -272556347 + AluJb SINE Alu 1 290 -22 1994 147 0 19 chr1 9637623 9637935 -272555729 - AluJo SINE Alu -6 306 1 1773 124 84 7 chr1 9637938 9638080 -272555584 - AluSx SINE Alu -17 295 165 2456 76 3 0 chr1 9638080 9638383 -272555281 - AluY SINE Alu -7 304 1 1773 124 84 7 chr1 9638383 9638514 -272555150 - AluSx SINE Alu -147 165 1 1131 53 0 8 chr1 9638514 9638647 -272555017 - AluY SINE Alu -179 132 1 780 173 15 8 chr1 9638677 9638810 -272554854 + AluJo SINE Alu 3 136 -176 189 330 22 44 chr1 9639123 9639214 -272554450 + MIR SINE MIR 27 115 -147 2348 101 3 0 chr1 9639351 9639648 -272554016 - AluSx SINE Alu -14 298 1 2196 123 7 0 chr1 9640038 9640348 -272553316 - AluSx SINE Alu 0 312 1 677 126 0 0 chr1 9640353 9640448 -272553216 - FLAM_C SINE Alu -14 129 35 765 219 20 106 chr1 9641163 9641244 -272552420 + MIR SINE MIR 7 93 -169 2124 130 7 10 chr1 9641244 9641551 -272552113 - AluSx SINE Alu -6 306 1 765 219 20 106 chr1 9641551 9641562 -272552102 + MIR SINE MIR 93 103 -159 1661 189 19 3 chr1 9641562 9641869 -272551795 - AluJb SINE Alu 0 312 1 765 219 20 106 chr1 9641869 9642021 -272551643 + MIR SINE MIR 103 231 -31 216 97 0 0 chr1 9642178 9642209 -272551455 + (TA)n Simple_repeat Simple_repeat 1 31 0 2442 73 0 13 chr1 9642209 9642523 -272551141 - AluY SINE Alu -1 310 1 2586 75 0 0 chr1 9642784 9643092 -272550572 - AluSq SINE Alu -5 308 1 231 330 30 20 chr1 9643937 9644037 -272549627 + MIR SINE MIR 58 158 -104 1224 99 0 29 chr1 9646516 9646716 -272546948 + AluSg/x SINE Alu 129 312 0 642 162 80 32 chr1 9646733 9646747 -272546917 + L1M4 LINE L1 5411 5423 -745 2383 78 0 36 chr1 9646747 9647056 -272546608 + AluY SINE Alu 1 298 -13 2041 110 0 38 chr1 9647056 9647375 -272546289 + AluSx SINE Alu 1 308 0 642 162 80 32 chr1 9647375 9647512 -272546152 + L1M4 LINE L1 5422 5566 -602 1281 304 109 24 chr1 9647512 9648329 -272545335 + L2 LINE L2 2375 3278 -35 299 240 211 10 chr1 9648336 9648440 -272545224 - MIR SINE MIR -62 146 22 2161 104 0 74 chr1 9649855 9650192 -272543472 + AluSx SINE Alu 1 312 0 306 214 29 68 chr1 9651326 9651429 -272542235 + MIR SINE MIR 45 143 -65 821 137 8 0 chr1 9651812 9651929 -272541735 - FLAM_C SINE Alu -15 118 1 454 280 63 46 chr1 9651941 9652116 -272541548 - MER5A DNA MER1_type -6 183 6 2496 58 0 0 chr1 9653881 9654173 -272539491 - AluY SINE Alu -19 292 1 2286 121 0 0 chr1 9654492 9654790 -272538874 + AluSx SINE Alu 1 298 -14 2553 70 0 13 chr1 9654864 9655179 -272538485 + AluY SINE Alu 1 311 0 233 317 80 66 chr1 9655871 9655956 -272537708 - L2 LINE L2 -506 2808 2726 2061 113 49 0 chr1 9655956 9656240 -272537424 + AluSx SINE Alu 1 298 -14 233 317 80 66 chr1 9656240 9656504 -272537160 - L2 LINE L2 -588 2726 2454 2026 148 0 26 chr1 9658168 9658478 -272535186 - AluSx SINE Alu -9 303 2 2061 131 0 25 chr1 9658529 9658843 -272534821 - AluJo SINE Alu -6 306 1 342 120 0 0 chr1 9658907 9658982 -272534682 - AluSx SINE Alu 0 308 234 1354 140 0 0 chr1 9658982 9659168 -272534496 - AluSx SINE Alu -126 186 1 229 330 30 20 chr1 9660012 9660112 -272533552 + MIR SINE MIR 58 158 -104 373 275 167 28 chr1 9663198 9663286 -272530378 + L2 LINE L2 2607 2681 -633 1577 139 0 16 chr1 9663286 9663544 -272530120 - AluJo SINE Alu -21 291 38 373 275 167 28 chr1 9663544 9663779 -272529885 + L2 LINE L2 2681 2975 -339 1391 174 34 19 chr1 9663830 9664094 -272529570 - AluJo SINE Alu -41 271 4 2019 135 3 3 chr1 9665877 9666189 -272527475 + AluSx SINE Alu 1 312 0 438 20 0 0 chr1 9666384 9666435 -272527229 + (CA)n Simple_repeat Simple_repeat 2 52 0 2172 92 0 3 chr1 9668461 9668753 -272524911 + AluSg SINE Alu 2 292 -18 24 0 0 0 chr1 9669448 9669472 -272524192 + AT_rich Low_complexity Low_complexity 1 24 0 5560 65 7 7 chr1 9669510 9670214 -272523450 - L1PA8 LINE L1 -3 6169 5466 210 214 0 0 chr1 9670239 9670281 -272523383 - MIR SINE MIR -110 152 111 265 350 60 0 chr1 9670334 9670451 -272523213 + MIR3 SINE MIR 45 168 -40 735 167 78 111 chr1 9670480 9670580 -272523084 + MER45A DNA AcHobo 2 104 -1477 1620 180 42 0 chr1 9670580 9670869 -272522795 - AluJo SINE Alu -11 301 1 2303 87 3 3 chr1 9670875 9671184 -272522480 - AluSq SINE Alu -4 309 1 735 167 78 111 chr1 9671184 9671256 -272522408 + MER45A DNA AcHobo 109 175 -3 235 301 147 15 chr1 9671782 9671918 -272521746 - L2 LINE L2 -9 3263 3110 207 289 18 53 chr1 9673473 9673587 -272520077 + G-rich Low_complexity Low_complexity 2 111 0 434 300 180 27 chr1 9674506 9674873 -272518791 - L2 LINE L2 -547 2767 2345 398 229 76 30 chr1 9674850 9674981 -272518683 + MIR SINE MIR 71 207 -55 * 1333 164 5 0 chr1 9674992 9675205 -272518459 + AluJb SINE Alu 87 300 -12 2025 107 41 0 chr1 9675205 9675496 -272518168 + AluSp SINE Alu 1 303 -10 228 227 0 0 chr1 9675511 9675555 -272518109 + MIR SINE MIR 218 261 -1 782 211 47 26 chr1 9675813 9676003 -272517661 - MER20 DNA MER1_type -25 194 1 221 348 136 25 chr1 9676032 9676243 -272517421 - MIR3 SINE MIR -24 238 1 528 254 71 3 chr1 9676759 9676928 -272516736 - MIR SINE MIR -63 145 13 2058 106 41 0 chr1 9676978 9677270 -272516394 + AluSc SINE Alu 1 304 -5 413 149 14 14 chr1 9677378 9677452 -272516212 - AluSg/x SINE Alu -22 287 214 548 231 64 6 chr1 9677554 9677710 -272515954 - AluSq SINE Alu -148 165 1 842 97 49 56 chr1 9677738 9677882 -272515782 + AluJb SINE Alu 6 148 -164 1794 66 125 15 chr1 9677882 9678154 -272515510 + AluSg SINE Alu 1 302 -8 482 171 152 0 chr1 9678848 9678953 -272514711 + MER20 DNA MER1_type 3 123 -96 241 272 168 8 chr1 9679044 9679169 -272514495 + L2 LINE L2 2908 3052 -220 719 207 0 0 chr1 9681243 9681364 -272512300 + AluJo/FLAM SINE Alu 2 122 -190 1077 114 0 45 chr1 9681364 9681540 -272512124 - AluSg/x SINE Alu 0 312 145 2201 96 0 0 chr1 9681640 9681931 -272511733 + AluSc SINE Alu 5 295 -14 426 219 187 0 chr1 9681966 9682089 -272511575 + MLT1H LTR MaLR 35 180 -369 2216 81 17 3 chr1 9682540 9682835 -272510829 - AluY SINE Alu -12 299 1 342 278 122 17 chr1 9682841 9683136 -272510528 - HAL1 LINE L1 -5 2502 2177 1479 263 71 34 chr1 9683142 9683480 -272510184 - HAL1 LINE L1 -923 1584 1211 1793 123 4 0 chr1 9683480 9683740 -272509924 - AluSx SINE Alu -12 300 40 1479 263 71 34 chr1 9683740 9684017 -272509647 - HAL1 LINE L1 -1296 1211 946 262 296 14 0 chr1 9684089 9684160 -272509504 - HAL1 LINE L1 -1798 709 638 298 261 87 87 chr1 9684161 9684276 -272509388 + MIR SINE MIR 5 119 -143 1262 117 0 6 chr1 9684279 9684459 -272509205 - AluSg/x SINE Alu 0 310 132 1882 71 0 20 chr1 9684459 9684712 -272508952 - AluY SINE Alu -11 300 53 282 114 0 0 chr1 9684812 9684856 -272508808 - AluJ/FLAM SINE Alu -224 78 35 1086 158 5 41 chr1 9684864 9685085 -272508579 + AluJo SINE Alu 87 299 -13 1871 113 53 3 chr1 9685189 9685472 -272508192 + AluY SINE Alu 1 297 -14 2333 87 0 0 chr1 9685559 9685859 -272507805 + AluSc SINE Alu 1 300 -9 2042 131 3 6 chr1 9685913 9686225 -272507439 - AluSx SINE Alu -1 311 1 1432 178 65 7 chr1 9686245 9686520 -272507144 + AluJo SINE Alu 3 293 -19 2062 128 0 0 chr1 9686538 9686834 -272506830 + AluSx SINE Alu 1 296 -16 24 38 0 38 chr1 9686834 9686852 -272506812 + AT_rich Low_complexity Low_complexity 1 18 -33 2137 116 0 0 chr1 9686852 9687144 -272506520 + AluSx SINE Alu 1 292 -20 24 38 0 38 chr1 9687144 9687178 -272506486 + AT_rich Low_complexity Low_complexity 18 51 0 622 249 83 5 chr1 9687249 9687454 -272506210 + HAL1 LINE L1 1359 1579 -928 1872 128 0 43 chr1 9687463 9687768 -272505896 + AluSx SINE Alu 1 292 -20 298 244 37 24 chr1 9687873 9687955 -272505709 - HAL1 LINE L1 -767 1740 1658 278 266 195 0 chr1 9687948 9688061 -272505603 + HAL1 LINE L1 1678 1812 -695 * 1584 157 29 55 chr1 9688208 9688520 -272505144 + AluJb SINE Alu 2 305 -7 2356 69 0 3 chr1 9688590 9688893 -272504771 - AluY SINE Alu -9 302 1 194 158 26 0 chr1 9688942 9688980 -272504684 + L2 LINE L2 2720 2758 -556 260 226 97 0 chr1 9689081 9689143 -272504521 + MIR SINE MIR 20 87 -121 2146 97 7 3 chr1 9689321 9689619 -272504045 - AluSg SINE Alu -11 299 1 303 273 15 0 chr1 9689640 9689706 -272503958 + L1MC/D LINE L1 5709 5775 -2033 1915 145 0 0 chr1 9689796 9690104 -272503560 - AluSx SINE Alu 0 308 1 296 178 0 0 chr1 9690121 9690166 -272503498 + Alu SINE Alu 2 46 -256 1885 115 4 18 chr1 9790172 9790451 -272403213 + LTR8 LTR ERV1 417 691 0 914 185 33 0 chr1 9790471 9790622 -272403042 + FRAM SINE Alu 1 155 -21 2101 107 4 0 chr1 9790622 9790892 -272402772 + AluSx SINE Alu 1 271 -41 182 36 0 36 chr1 9790898 9790926 -272402738 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 634 173 0 0 chr1 9791142 9791246 -272402418 + AluJb SINE Alu 2 105 -207 711 276 268 8 chr1 9791246 9791630 -272402034 + MER20B DNA MER1_type 300 783 0 2176 126 7 0 chr1 9791760 9792062 -272401602 - AluSx SINE Alu -8 304 1 2190 105 7 0 chr1 9792082 9792378 -272401286 - AluSx SINE Alu -14 298 1 1549 155 119 10 chr1 9792551 9792854 -272400810 + MER44D DNA MER2_type 1 606 -3 2261 97 0 10 chr1 9793427 9793727 -272399937 - AluY SINE Alu -14 297 1 2290 103 7 0 chr1 9793727 9794028 -272399636 - AluSx SINE Alu -9 303 1 614 239 0 136 chr1 9794172 9794258 -272399406 - MIR SINE MIR -12 250 154 1850 158 7 10 chr1 9794258 9794550 -272399114 - AluJo SINE Alu -21 291 1 614 239 0 136 chr1 9794550 9794706 -272398958 - MIR SINE MIR -108 154 41 2558 190 57 45 chr1 9794845 9795249 -272398415 + L1ME1 LINE L1 5516 5914 -420 2014 137 10 13 chr1 9795249 9795556 -272398108 + AluJb SINE Alu 1 306 -6 2558 190 57 45 chr1 9795556 9795806 -272397858 + L1ME1 LINE L1 5914 6334 0 298 251 176 21 chr1 9795921 9796038 -272397626 + MIR SINE MIR 14 147 -61 209 191 0 21 chr1 9796072 9796119 -272397545 - L2 LINE L2 -1 3312 3267 1605 182 27 0 chr1 9796411 9796669 -272396995 + AluJo SINE Alu 1 265 -47 1069 119 0 13 chr1 9796877 9797028 -272396636 + AluSg1 SINE Alu 1 149 -160 280 335 12 24 chr1 9797202 9797372 -272396292 + T-rich Low_complexity Low_complexity 2 169 0 1429 163 57 43 chr1 9798119 9798401 -272395263 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr1 9798401 9798431 -272395233 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 9799260 9799282 -272394382 + AT_rich Low_complexity Low_complexity 1 22 0 260 208 38 66 chr1 9799515 9799621 -272394043 + MIR3 SINE MIR 106 208 0 1326 132 78 5 chr1 9801515 9801734 -272391930 - MER46A DNA MER2_type -1 235 1 239 79 26 0 chr1 9801827 9801865 -272391799 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 208 217 33 17 chr1 9801867 9801927 -272391737 - L2 LINE L2 -5 3308 3248 207 239 60 45 chr1 9802326 9802393 -272391271 - L2 LINE L2 -9 3263 3196 2007 102 46 14 chr1 9803721 9804006 -272389658 + AluSg SINE Alu 1 294 -16 1761 121 0 0 chr1 9804053 9804292 -272389372 + AluSq SINE Alu 1 239 -74 321 277 27 18 chr1 9804294 9804406 -272389258 + L1ME2 LINE L1 3387 3499 -2647 1895 163 0 0 chr1 9804428 9804723 -272388941 + AluSx SINE Alu 1 295 -17 2525 84 0 0 chr1 9804726 9805035 -272388629 + AluSc SINE Alu 1 309 0 2445 225 48 73 chr1 9805038 9805522 -272388142 + L1ME2 LINE L1 3475 3970 -2176 2343 91 0 7 chr1 9805522 9805819 -272387845 + AluSg1 SINE Alu 1 295 -14 1513 168 7 41 chr1 9805819 9806111 -272387553 - AluJo SINE Alu -30 282 1 2445 225 48 73 chr1 9806111 9806451 -272387213 + L1ME2 LINE L1 3969 4274 -1872 2333 87 0 7 chr1 9806451 9806750 -272386914 + AluSx SINE Alu 1 297 -15 2445 225 48 73 chr1 9806750 9806890 -272386774 + L1ME2 LINE L1 4274 4416 -1730 1804 154 6 41 chr1 9806890 9807209 -272386455 + AluJo SINE Alu 1 308 -4 832 209 61 26 chr1 9807242 9807418 -272386246 + L1ME2 LINE L1 5551 5740 -426 1929 238 136 17 chr1 9807418 9807948 -272385716 + MLT1E LTR MaLR 1 593 0 832 209 61 26 chr1 9807948 9808032 -272385632 + L1ME2 LINE L1 5740 5820 -346 943 133 0 0 chr1 9808036 9808171 -272385493 + AluSq/x SINE Alu 1 135 -177 2095 123 3 32 chr1 9808171 9808480 -272385184 + AluSq SINE Alu 1 300 -13 706 222 81 40 chr1 9808497 9808745 -272384919 + L1ME2 LINE L1 5825 6082 -82 265 106 64 21 chr1 9808747 9808794 -272384870 + L1ME1 LINE L1 6063 6111 -55 2202 117 3 3 chr1 9808894 9809193 -272384471 + AluSc SINE Alu 1 299 -10 886 170 0 0 chr1 9809205 9809340 -272384324 + AluJb SINE Alu 153 287 -25 839 251 59 12 chr1 9809390 9809645 -272384019 + L1MC4 LINE L1 7323 7589 -453 486 214 9 9 chr1 9809661 9809773 -272383891 + L1ME LINE L1 5655 5766 -404 2397 88 3 0 chr1 9809777 9810071 -272383593 + AluSc SINE Alu 1 295 -14 2180 111 0 3 chr1 9810086 9810374 -272383290 + AluSx SINE Alu 8 294 -18 1918 156 7 10 chr1 9810384 9810685 -272382979 + AluJb SINE Alu 1 300 -12 234 248 80 32 chr1 9810686 9810811 -272382853 + L1ME LINE L1 5757 5887 -283 1546 162 21 0 chr1 9810811 9811075 -272382589 + AluJo SINE Alu 40 308 0 2121 110 39 26 chr1 9811081 9811389 -272382275 + AluSx SINE Alu 1 312 0 675 206 72 65 chr1 9811456 9811648 -272382016 + L1MC4 LINE L1 7720 7916 -126 276 30 0 0 chr1 9811648 9811681 -272381983 + (GA)n Simple_repeat Simple_repeat 2 34 0 675 206 72 65 chr1 9811681 9811809 -272381855 + L1MC4 LINE L1 7916 8042 0 2260 111 3 7 chr1 9811814 9812121 -272381543 + AluSx SINE Alu 1 306 -6 1063 107 0 57 chr1 9812122 9812305 -272381359 + AluSg/x SINE Alu 134 307 0 294 312 135 57 chr1 9812405 9812484 -272381180 - MIR3 SINE MIR -19 243 172 1028 190 0 6 chr1 9812484 9812658 -272381006 - FAM SINE Alu -2 173 1 294 312 135 57 chr1 9812658 9812805 -272380859 - MIR3 SINE MIR -90 172 4 269 150 0 0 chr1 9813065 9813105 -272380559 + Alu SINE Alu 1 40 -268 1681 192 0 0 chr1 9813133 9813414 -272380250 - AluJb SINE Alu -31 281 1 2413 70 0 20 chr1 9813458 9813759 -272379905 + AluY SINE Alu 1 295 -16 900 178 41 0 chr1 9813762 9813908 -272379756 + AluJb SINE Alu 133 284 -28 884 246 8 54 chr1 9814274 9814320 -272379344 - MIR SINE MIR -32 230 183 2083 116 3 3 chr1 9814320 9814626 -272379038 + AluSx SINE Alu 1 306 0 884 246 8 54 chr1 9814626 9814818 -272378846 - MIR SINE MIR -79 183 2 2493 70 0 0 chr1 9815139 9815438 -272378226 + AluY SINE Alu 1 299 -12 2064 115 35 0 chr1 9815718 9816006 -272377658 + AluSx SINE Alu 1 298 -14 292 218 46 35 chr1 9816572 9816659 -272377005 + MIR SINE MIR 118 205 -57 2420 74 3 0 chr1 9817780 9818079 -272375585 - AluSp SINE Alu -13 300 1 287 277 84 0 chr1 9818201 9818284 -272375380 - L2 LINE L2 -18 3254 3165 1065 186 0 0 chr1 9818458 9818641 -272375023 + FRAM SINE Alu 1 175 -1 2257 107 3 3 chr1 9818823 9819133 -272374531 - AluSx SINE Alu 0 312 3 838 146 0 0 chr1 9819164 9819294 -272374370 + FRAM SINE Alu 1 40 0 440 262 73 43 chr1 9820637 9820836 -272372828 + MIR SINE MIR 21 216 -46 2221 75 3 3 chr1 9821422 9821704 -272371960 - AluY SINE Alu -6 305 24 2358 91 0 7 chr1 9821874 9822171 -272371493 - AluSg1 SINE Alu -14 295 1 1189 249 47 20 chr1 9822205 9822655 -272371009 - L1M4 LINE L1 -2210 3936 3475 2546 84 0 0 chr1 9822658 9822967 -272370697 - AluSc SINE Alu 0 309 1 1974 156 0 0 chr1 9822970 9823265 -272370399 - AluSx SINE Alu -17 295 1 396 292 18 18 chr1 9823287 9823400 -272370264 - L1M4 LINE L1 -2647 3499 3387 1773 121 0 0 chr1 9823402 9823641 -272370023 - AluSq SINE Alu -74 239 1 1564 279 102 21 chr1 9823646 9823683 -272369981 - L1MEc LINE L1 -5331 1065 1032 2414 76 0 13 chr1 9823683 9823987 -272369677 - AluY SINE Alu -11 300 1 1564 279 102 21 chr1 9823987 9824170 -272369494 - L1MEc LINE L1 -5364 1032 865 2482 75 0 0 chr1 9824170 9824465 -272369199 - AluSp SINE Alu -18 295 1 1564 279 102 21 chr1 9824465 9825195 -272368469 - L1MEc LINE L1 -5531 865 37 233 186 0 0 chr1 9825196 9825239 -272368425 - L2 LINE L2 -565 2749 2707 * 415 207 71 71 chr1 9825223 9825363 -272368301 - MIR SINE MIR -59 203 64 1951 139 37 7 chr1 9825885 9826179 -272367485 - AluJb SINE Alu -9 303 1 862 114 18 0 chr1 9826237 9826351 -272367313 - AluSq/x SINE Alu -196 116 1 227 216 20 0 chr1 9826422 9826473 -272367191 + AluJb SINE Alu 120 171 -131 1631 161 51 15 chr1 9826570 9826844 -272366820 - AluJo SINE Alu -17 295 12 2194 130 0 7 chr1 9826859 9827167 -272366497 - AluSx SINE Alu -6 306 1 503 230 139 24 chr1 9827650 9827815 -272365849 + MIR SINE MIR 50 233 -29 678 278 129 93 chr1 9827907 9828615 -272365049 - L2 LINE L2 0 3272 2508 1768 170 0 0 chr1 9828615 9828886 -272364778 - AluJo SINE Alu -15 297 27 678 278 129 93 chr1 9828886 9829181 -272364483 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9832063 9832085 -272361579 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9832141 9832177 -272361487 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9832277 9832300 -272361364 + AT_rich Low_complexity Low_complexity 1 23 0 1794 178 0 10 chr1 9833182 9833523 -272360141 + AluJo SINE Alu 1 312 0 2424 87 0 0 chr1 9834630 9834930 -272358734 - AluSg SINE Alu -10 300 1 1822 113 117 11 chr1 9835305 9835587 -272358077 + AluSx SINE Alu 1 312 0 2107 137 0 0 chr1 9835763 9836056 -272357608 - AluSx SINE Alu -19 293 1 2361 51 19 29 chr1 9836476 9836788 -272356876 - AluY SINE Alu -2 309 1 1680 170 25 11 chr1 9836820 9837102 -272356562 + AluJb SINE Alu 1 286 -26 2048 141 0 16 chr1 9837973 9838286 -272355378 - AluJo SINE Alu -4 308 1 1028 96 0 0 chr1 9838362 9838497 -272355167 + AluSg/x SINE Alu 178 312 0 2293 119 7 0 chr1 9838902 9839212 -272354452 - AluSx SINE Alu 0 312 1 385 190 20 10 chr1 9839885 9839985 -272353679 + CT-rich Low_complexity Low_complexity 5 105 0 1919 116 11 22 chr1 9839991 9840268 -272353396 - AluSx SINE Alu -38 274 1 1520 162 102 4 chr1 9840366 9840632 -272353032 + AluJo SINE Alu 1 292 -20 701 203 7 22 chr1 9840717 9840855 -272352809 - AluJo SINE Alu -176 136 1 2182 109 0 0 chr1 9840863 9841139 -272352525 - AluSx SINE Alu -16 296 21 2230 92 13 13 chr1 9841450 9841755 -272351909 - AluSp SINE Alu -8 305 1 315 283 217 7 chr1 9842280 9842432 -272351232 - MIR SINE MIR -55 207 24 2331 57 54 3 chr1 9843373 9843669 -272349995 - AluY SINE Alu 0 311 1 2405 56 0 40 chr1 9844122 9844426 -272349238 - AluY SINE Alu -18 293 2 189 264 92 35 chr1 9845451 9845538 -272348126 + L2 LINE L2 3213 3304 -9 251 196 20 0 chr1 9845851 9845902 -272347762 + L2 LINE L2 3262 3313 0 304 260 29 58 chr1 9846398 9846502 -272347162 - L1M4 LINE L1 -2973 3173 3073 2316 84 3 0 chr1 9847144 9847430 -272346234 - AluY SINE Alu -24 287 1 2257 103 3 13 chr1 9847857 9848169 -272345495 - AluSc SINE Alu 0 309 1 225 211 0 0 chr1 9849255 9849307 -272344357 + A-rich Low_complexity Low_complexity 1 52 0 375 23 0 0 chr1 9849329 9849373 -272344291 + (TG)n Simple_repeat Simple_repeat 1 44 0 1211 156 8 181 chr1 9854951 9855310 -272338354 - AluJb SINE Alu -5 297 1 2041 144 3 25 chr1 9855325 9855644 -272338020 - AluJb SINE Alu 0 312 1 334 256 179 89 chr1 9856113 9856426 -272337238 - HAL1 LINE L1 -1292 1215 875 344 286 70 41 chr1 9856695 9856866 -272336798 - MIR SINE MIR -50 212 37 560 264 130 13 chr1 9857489 9857720 -272335944 + L3 LINE CR1 1279 1536 -41 1983 143 0 0 chr1 9857869 9858162 -272335502 - AluSg SINE Alu -17 293 1 2145 95 3 0 chr1 9858164 9858458 -272335206 - AluY SINE Alu -16 295 1 1801 124 11 0 chr1 9858460 9858725 -272334939 - AluSx SINE Alu -11 301 34 1594 97 8 53 chr1 9858830 9859077 -272334587 - MER46A DNA MER2_type 0 236 1 2119 119 7 3 chr1 9859170 9859473 -272334191 + AluSx SINE Alu 1 304 -8 2294 90 3 0 chr1 9859479 9859780 -272333884 + AluSc SINE Alu 1 302 -7 1808 156 19 10 chr1 9859905 9860213 -272333451 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 9863898 9863928 -272329736 + AT_rich Low_complexity Low_complexity 1 30 0 294 346 6 13 chr1 9866596 9866752 -272326912 + CT-rich Low_complexity Low_complexity 1 155 0 210 143 0 0 chr1 9868019 9868054 -272325610 + (TG)n Simple_repeat Simple_repeat 1 35 0 640 276 51 70 chr1 9870236 9870548 -272323116 - L2 LINE L2 -8 3305 3000 27 0 0 0 chr1 9871257 9871284 -272322380 + AT_rich Low_complexity Low_complexity 1 27 0 337 283 10 30 chr1 9873424 9873523 -272320141 - MER81 DNA DNA 0 114 18 394 283 118 56 chr1 9874336 9874727 -272318937 - L1MC4a LINE L1 -297 5824 5759 2186 107 0 0 chr1 9874727 9875036 -272318628 + AluY SINE Alu 1 309 -2 1729 131 48 14 chr1 9875160 9875475 -272318189 - AluJo SINE Alu 0 336 12 2003 134 0 7 chr1 9875490 9875796 -272317868 - AluSx SINE Alu -8 304 1 509 230 139 24 chr1 9876279 9876444 -272317220 + MIR SINE MIR 50 233 -29 657 278 129 93 chr1 9876536 9877244 -272316420 - L2 LINE L2 0 3272 2508 1630 170 0 0 chr1 9877244 9877515 -272316149 - AluJo SINE Alu -15 297 27 657 278 129 93 chr1 9877515 9877810 -272315854 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9880692 9880714 -272312950 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9880770 9880806 -272312858 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9880906 9880929 -272312735 + AT_rich Low_complexity Low_complexity 1 23 0 1660 170 0 0 chr1 9881811 9882128 -272311536 + AluJo SINE Alu 1 317 0 2099 97 3 7 chr1 9883254 9883554 -272310110 - AluSg SINE Alu -11 299 1 1622 139 10 17 chr1 9883929 9884217 -272309447 + AluSx SINE Alu 1 286 -26 935 137 18 36 chr1 9884366 9884534 -272309130 + FRAM SINE Alu 1 165 -1 2099 125 0 3 chr1 9884954 9885267 -272308397 - AluSx SINE Alu 0 312 1 2088 193 68 45 chr1 9885268 9885349 -272308315 + L1ME1 LINE L1 5580 5658 -676 1557 142 56 8 chr1 9885349 9885617 -272308047 + AluSg SINE Alu 1 281 -29 2088 193 68 45 chr1 9885617 9886121 -272307543 + L1ME1 LINE L1 5658 6334 0 928 182 0 6 chr1 9886163 9886328 -272307336 + FRAM SINE Alu 1 161 -15 2014 108 3 0 chr1 9886330 9886616 -272307048 + AluSx SINE Alu 1 287 -25 2322 71 0 0 chr1 9886630 9886926 -272306738 + AluSg SINE Alu 1 296 -14 380 305 99 0 chr1 9886945 9887096 -272306568 - Charlie1b DNA MER1_type -211 312 147 2289 73 3 0 chr1 9888029 9888316 -272305348 - AluSq SINE Alu -25 288 1 2027 107 7 0 chr1 9888642 9888966 -272304698 - AluSx SINE Alu 0 326 1 838 132 0 0 chr1 9890018 9890147 -272303517 - AluSp/q SINE Alu -12 301 173 1875 112 0 14 chr1 9890698 9890984 -272302680 - AluSx SINE Alu -19 293 12 701 188 0 16 chr1 9891009 9891137 -272302527 - FLAM_C SINE Alu -16 127 2 343 258 62 56 chr1 9891137 9891281 -272302383 - L1M4 LINE L1 -6376 479 23 2005 77 26 4 chr1 9891552 9891824 -272301840 + AluSq SINE Alu 14 291 -22 933 151 6 67 chr1 9891831 9892010 -272301654 + AluSg/x SINE Alu 130 297 -15 227 217 14 72 chr1 9892243 9892312 -272301352 - MIR SINE MIR -124 84 20 319 226 105 65 chr1 9893282 9893406 -272300258 - FLAM_A SINE Alu -4 129 1 189 0 0 0 chr1 9893409 9893430 -272300234 + (T)n Simple_repeat Simple_repeat 1 21 0 1796 117 44 11 chr1 9893562 9893835 -272299829 - AluSx SINE Alu -30 282 1 1428 162 21 0 chr1 9893841 9894105 -272299559 - AluJo SINE Alu 0 308 40 241 197 38 29 chr1 9894105 9894230 -272299434 - L1ME LINE L1 -277 5887 5757 1061 218 0 25 chr1 9894231 9894511 -272299153 - AluJb SINE Alu -13 299 27 2001 122 0 0 chr1 9894547 9894841 -272298823 - AluSx SINE Alu -18 294 1 2300 60 10 3 chr1 9894880 9895181 -272298483 + AluY SINE Alu 1 303 -8 2321 58 3 22 chr1 9895311 9895623 -272298041 + AluSp SINE Alu 1 306 -7 968 88 15 0 chr1 9895679 9895816 -272297848 + AluSp/q SINE Alu 165 303 -10 457 276 0 24 chr1 9895845 9895968 -272297696 + MSTB LTR MaLR 208 327 -99 906 114 0 0 chr1 9895973 9896104 -272297560 - AluSg1 SINE Alu -178 131 1 278 103 0 0 chr1 9896104 9896143 -272297521 + MSTB LTR MaLR 388 426 0 2260 91 0 7 chr1 9896203 9896510 -272297154 + AluY SINE Alu 1 305 -6 687 106 19 10 chr1 9896623 9896727 -272296937 + AluSq/x SINE Alu 29 133 -180 2201 104 0 7 chr1 9897672 9897981 -272295683 - AluSx SINE Alu -5 307 1 902 181 71 16 chr1 9898012 9898194 -272295470 + AluJo SINE Alu 86 277 -35 22 0 0 0 chr1 9898196 9898218 -272295446 + AT_rich Low_complexity Low_complexity 1 22 0 1662 104 0 4 chr1 9898789 9899019 -272294645 + AluSx SINE Alu 1 229 -83 1831 104 0 0 chr1 9899422 9899681 -272293983 - AluY SINE Alu -12 299 41 914 231 124 43 chr1 9899716 9900028 -272293636 + L1MEc LINE L1 1836 2121 -4275 2027 121 7 3 chr1 9900028 9900333 -272293331 + AluSx SINE Alu 1 306 -6 914 231 124 43 chr1 9900333 9900553 -272293111 + L1MEc LINE L1 2121 2411 -3985 22 0 0 0 chr1 9901031 9901053 -272292611 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 9901185 9901208 -272292456 + AT_rich Low_complexity Low_complexity 1 23 0 2142 112 0 3 chr1 9901505 9901810 -272291854 - AluSx SINE Alu -8 304 1 1672 171 3 7 chr1 9902140 9902427 -272291237 - AluJo SINE Alu -22 290 5 1749 162 13 19 chr1 9902707 9903021 -272290643 - AluJb SINE Alu 0 312 1 534 222 139 0 chr1 9903725 9903869 -272289795 - MIR SINE MIR -96 166 3 2122 114 3 0 chr1 9904516 9904815 -272288849 - AluSp SINE Alu -13 300 1 602 204 39 73 chr1 9904815 9904902 -272288762 - L1M4b LINE L1 -4539 2418 2330 1226 181 102 8 chr1 9904902 9905167 -272288497 - AluJo SINE Alu -22 290 1 602 204 39 73 chr1 9905167 9905285 -272288379 - L1M4b LINE L1 -4627 2330 2220 1912 150 10 3 chr1 9905295 9905601 -272288063 - AluJb SINE Alu -4 308 1 1636 168 39 39 chr1 9905608 9905918 -272287746 - AluJo SINE Alu 0 312 3 2398 82 3 7 chr1 9906103 9906407 -272287257 - AluSq SINE Alu -10 303 1 2408 114 0 0 chr1 9906424 9906732 -272286932 - AluSx SINE Alu -4 308 1 2443 80 3 0 chr1 9906999 9907301 -272286363 + AluY SINE Alu 1 303 -8 2081 84 23 43 chr1 9907316 9907615 -272286049 + AluSp SINE Alu 3 295 -18 2162 108 0 10 chr1 9907626 9907931 -272285733 - AluSq SINE Alu 0 313 12 722 188 0 16 chr1 9907956 9908084 -272285580 - FLAM_C SINE Alu -16 127 2 349 258 62 56 chr1 9908084 9908228 -272285436 - L1M4b LINE L1 -6376 479 23 2137 77 26 4 chr1 9908499 9908771 -272284893 + AluSq SINE Alu 14 291 -22 1017 151 6 67 chr1 9908778 9908957 -272284707 + AluSg/x SINE Alu 128 295 -15 230 217 14 72 chr1 9909190 9909259 -272284405 - MIR SINE MIR -124 84 20 332 156 0 0 chr1 9910222 9910286 -272283378 - FLAM SINE Alu -4 129 66 1947 145 24 7 chr1 9910346 9910643 -272283021 - AluJo SINE Alu -7 305 4 588 162 0 18 chr1 9910654 9910765 -272282899 - FLAM_A SINE Alu -1 141 33 2496 72 0 3 chr1 9910956 9911261 -272282403 + AluY SINE Alu 1 304 -7 2447 92 0 3 chr1 9911516 9911820 -272281844 - AluSx SINE Alu -9 303 1 826 270 116 3 chr1 9911926 9912263 -272281401 + L2 LINE L2 1532 1906 -1408 628 259 146 0 chr1 9912444 9912602 -272281062 + MER5A DNA MER1_type 9 189 0 2262 73 0 17 chr1 9912648 9912958 -272280706 + AluY SINE Alu 1 305 0 1661 289 116 27 chr1 9913113 9913513 -272280151 + L2 LINE L2 1945 2308 -1005 2114 75 8 4 chr1 9913513 9913779 -272279885 - AluSq SINE Alu -14 299 33 1780 136 4 25 chr1 9913780 9914059 -272279605 - AluJo SINE Alu -23 289 17 1661 289 116 27 chr1 9914059 9914915 -272278749 + L2 LINE L2 2307 3309 -4 2132 121 0 14 chr1 9915089 9915386 -272278278 + AluSq SINE Alu 1 293 -20 2126 100 24 7 chr1 9915391 9915720 -272277944 + AluSg SINE Alu 1 334 0 1396 99 0 0 chr1 9915720 9915901 -272277763 + AluSg/x SINE Alu 126 306 -4 2361 99 0 0 chr1 9917084 9917378 -272276286 - AluSx SINE Alu -16 296 3 2302 110 3 0 chr1 9919847 9920147 -272273517 - AluSg SINE Alu -9 301 1 339 78 0 0 chr1 9920918 9920969 -272272695 + (TG)n Simple_repeat Simple_repeat 2 52 0 2417 84 0 28 chr1 9921701 9922023 -272271641 + AluSq SINE Alu 1 313 0 1913 123 18 4 chr1 9922119 9922420 -272271244 + AluSx SINE Alu 1 305 0 783 222 22 16 chr1 9923834 9924019 -272269645 + MER5A DNA MER1_type 4 189 0 2249 114 0 0 chr1 9924269 9924568 -272269096 + AluSx SINE Alu 1 299 -13 432 227 23 11 chr1 9925013 9925101 -272268563 - L2 LINE L2 -3 3269 3181 1928 109 0 0 chr1 9925101 9925348 -272268316 + AluSx SINE Alu 51 297 -15 688 252 81 33 chr1 9925438 9925594 -272268070 + MIR SINE MIR 33 203 -59 864 186 155 26 chr1 9925594 9925788 -272267876 - MER20B DNA MER1_type 0 219 1 688 252 81 33 chr1 9925788 9925841 -272267823 + MIR SINE MIR 203 252 -10 2366 112 0 0 chr1 9926276 9926580 -272267084 + AluSx SINE Alu 1 304 -8 234 0 0 0 chr1 9927107 9927133 -272266531 + (T)n Simple_repeat Simple_repeat 1 26 0 1171 214 95 18 chr1 9927269 9927605 -272266059 - L1ME1 LINE L1 -297 5869 5508 180 111 0 0 chr1 9927605 9927632 -272266032 + (A)n Simple_repeat Simple_repeat 1 27 0 910 227 38 30 chr1 9927733 9927933 -272265731 + MIR SINE MIR 4 201 -61 1992 112 73 3 chr1 9927933 9928220 -272265444 + AluSg1 SINE Alu 1 307 -2 2276 114 0 0 chr1 9928228 9928525 -272265139 + AluSg SINE Alu 1 297 -13 910 227 38 30 chr1 9928525 9928559 -272265105 + MIR SINE MIR 207 252 -10 432 227 23 11 chr1 9928970 9929058 -272264606 - L2 LINE L2 -3 3269 3181 1928 109 0 0 chr1 9929058 9929305 -272264359 + AluSx SINE Alu 51 297 -15 688 252 81 33 chr1 9929395 9929551 -272264113 + MIR SINE MIR 33 203 -59 864 186 155 26 chr1 9929551 9929745 -272263919 - MER20 DNA MER1_type 0 219 1 688 252 81 33 chr1 9929745 9929798 -272263866 + MIR SINE MIR 203 252 -10 2366 112 0 0 chr1 9930236 9930540 -272263124 + AluSx SINE Alu 1 304 -8 2266 113 27 0 chr1 9931067 9931368 -272262296 - AluSx SINE Alu -3 309 1 246 235 160 28 chr1 9931447 9931558 -272262106 + MIR SINE MIR 21 150 -58 2377 76 0 20 chr1 9931558 9931859 -272261805 + AluY SINE Alu 1 295 -16 246 235 160 28 chr1 9931859 9931871 -272261793 + MIR SINE MIR 150 159 -49 1437 170 22 107 chr1 9931897 9932079 -272261585 - AluJo SINE Alu -11 291 95 1446 188 114 0 chr1 9932079 9932357 -272261307 + AluJb SINE Alu 1 307 0 2165 105 14 0 chr1 9932357 9932482 -272261182 + AluSc SINE Alu 2 124 -185 2199 112 3 3 chr1 9932482 9932785 -272260879 + AluSg SINE Alu 1 303 -7 2165 105 14 0 chr1 9932785 9932944 -272260720 + AluSc SINE Alu 124 290 -19 1437 170 22 107 chr1 9932944 9933077 -272260587 - AluJo SINE Alu -205 97 1 547 294 17 23 chr1 9933077 9933254 -272260410 - L2 LINE L2 -11 3302 3127 183 42 0 0 chr1 9933309 9933333 -272260331 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1906 164 0 0 chr1 9933333 9933614 -272260050 - AluJb SINE Alu -31 281 1 2603 62 0 0 chr1 9933655 9933959 -272259705 + AluY SINE Alu 1 304 -7 2425 84 3 0 chr1 9934082 9934379 -272259285 + AluSx SINE Alu 1 298 -14 1951 88 95 4 chr1 9935616 9935879 -272257785 + AluSq SINE Alu 3 289 -24 2404 61 0 14 chr1 9935889 9936186 -272257478 + AluY SINE Alu 1 293 -18 2479 63 7 7 chr1 9936839 9937139 -272256525 + AluY SINE Alu 1 300 -11 2310 98 3 0 chr1 9937219 9937516 -272256148 + AluY SINE Alu 1 298 -13 1728 86 125 16 chr1 9937528 9937784 -272255880 + AluSg1 SINE Alu 10 293 -16 1388 109 16 0 chr1 9937785 9937977 -272255687 - AluSg/x SINE Alu -13 299 105 2260 106 3 7 chr1 9938156 9938459 -272255205 - AluSq SINE Alu -7 306 5 991 181 71 16 chr1 9938496 9938678 -272254986 + AluJo SINE Alu 86 277 -35 23 0 0 0 chr1 9938680 9938703 -272254961 + AT_rich Low_complexity Low_complexity 1 23 0 2142 125 7 3 chr1 9939274 9939571 -272254093 + AluSx SINE Alu 1 298 -14 2203 126 7 0 chr1 9939591 9939893 -272253771 + AluSx SINE Alu 1 304 -8 730 271 268 8 chr1 9940023 9940407 -272253257 - MER20B DNA MER1_type 0 783 300 658 173 0 0 chr1 9940407 9940511 -272253153 - AluJb SINE Alu -207 105 2 182 36 0 36 chr1 9940727 9940755 -272252909 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2034 101 4 22 chr1 9940760 9941038 -272252626 - AluSq SINE Alu -40 273 1 1459 138 0 28 chr1 9941062 9941280 -272252384 + AluJo SINE Alu 82 293 -19 240 35 0 0 chr1 9941920 9941949 -272251715 + (T)n Simple_repeat Simple_repeat 1 29 0 325 241 71 35 chr1 9942032 9942173 -272251491 - L3 LINE CR1 -28 1549 1404 2182 126 10 0 chr1 9942285 9942594 -272251070 - AluSx SINE Alu 0 312 1 542 174 0 0 chr1 9942696 9942782 -272250882 - AluSp SINE Alu -96 217 132 1635 173 11 4 chr1 9942782 9943053 -272250611 - AluJo SINE Alu -39 273 1 456 205 71 31 chr1 9943055 9943182 -272250482 + MER104 DNA Tc2 45 176 -4 313 293 178 19 chr1 9943186 9943343 -272250321 - L2 LINE L2 -2116 1198 1017 1800 155 40 10 chr1 9943346 9943643 -272250021 - AluJo SINE Alu -6 306 1 403 202 18 55 chr1 9943865 9943974 -272249690 - MER20B DNA MER1_type -678 105 1 816 191 0 14 chr1 9944337 9944484 -272249180 - FRAM SINE Alu -24 152 8 342 67 0 0 chr1 9944617 9944662 -272249002 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1650 211 0 6 chr1 9944692 9945026 -272248638 - AluJb SINE Alu 0 312 1 2194 107 13 10 chr1 9945035 9945334 -272248330 - AluSx SINE Alu -12 300 1 2446 91 3 0 chr1 9945348 9945655 -272248009 - AluSp SINE Alu -5 308 1 1588 174 11 26 chr1 9945689 9945959 -272247705 - AluJo SINE Alu -46 266 1 755 319 111 11 chr1 9945990 9946341 -272247323 - L2 LINE L2 -28 3285 2900 668 227 78 0 chr1 9946890 9947044 -272246620 + MER21B LTR ERV1 329 494 -369 2171 131 0 16 chr1 9947279 9947591 -272246073 + AluSc SINE Alu 1 307 -2 1248 121 0 32 chr1 9947599 9947789 -272245875 + AluSg/x SINE Alu 127 310 0 574 104 0 0 chr1 9947806 9947883 -272245781 - Alu SINE Alu -231 78 2 2190 104 0 4 chr1 9947927 9948206 -272245458 + AluSx SINE Alu 18 295 -17 372 88 10 0 chr1 9948319 9948381 -272245283 - Alu SINE Alu -14 288 237 22 0 0 0 chr1 9948691 9948713 -272244951 + AT_rich Low_complexity Low_complexity 1 22 0 2408 101 0 0 chr1 9948713 9949021 -272244643 - AluSx SINE Alu -4 308 1 766 181 23 8 chr1 9949021 9949154 -272244510 - AluJo SINE Alu -176 136 2 209 257 188 20 chr1 9949155 9949256 -272244408 + L2 LINE L2 3155 3272 0 2590 63 0 0 chr1 9949945 9950245 -272243419 - AluY SINE Alu -11 300 1 2429 89 3 0 chr1 9950466 9950769 -272242895 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 9950780 9950802 -272242862 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 9950935 9950958 -272242706 + AT_rich Low_complexity Low_complexity 1 23 0 2291 112 0 3 chr1 9951255 9951560 -272242104 - AluSx SINE Alu -8 304 1 1818 171 3 7 chr1 9951890 9952177 -272241487 - AluJo SINE Alu -22 290 5 1930 167 13 10 chr1 9952461 9952772 -272240892 - AluJb SINE Alu 0 312 1 515 224 147 0 chr1 9953476 9953619 -272240045 - MIR SINE MIR -96 166 3 2551 70 3 0 chr1 9954266 9954566 -272239098 - AluSq SINE Alu -12 301 1 306 23 0 23 chr1 9954892 9954935 -272238729 + (TTTTA)n Simple_repeat Simple_repeat 2 140 0 2165 107 7 0 chr1 9954935 9955216 -272238448 - AluSx SINE Alu -29 283 1 885 116 0 8 chr1 9956267 9956396 -272237268 - AluSg/x SINE Alu -12 298 171 203 159 0 127 chr1 9956808 9956871 -272236793 + T-rich Low_complexity Low_complexity 1 55 0 2477 79 0 0 chr1 9956939 9957242 -272236422 - AluSq SINE Alu -10 303 1 1344 162 93 15 chr1 9957244 9957503 -272236161 - AluJo SINE Alu -21 291 13 421 294 96 14 chr1 9957542 9957760 -272235904 - MARNA DNA Mariner -283 303 68 1478 193 0 0 chr1 9957789 9958038 -272235626 + AluJo SINE Alu 1 249 -63 2311 75 0 0 chr1 9958038 9958349 -272235315 - AluSc SINE Alu 0 311 1 318 183 0 0 chr1 9958387 9958447 -272235217 + AluJo SINE Alu 240 299 -3 2416 69 0 0 chr1 9958594 9958883 -272234781 - AluSg1 SINE Alu -20 289 1 24 0 0 0 chr1 9959069 9959093 -272234571 + AT_rich Low_complexity Low_complexity 1 24 0 384 282 28 66 chr1 9962491 9962704 -272230960 + L2 LINE L2 2482 2686 -628 1808 162 44 0 chr1 9962968 9963142 -272230522 - AluJo SINE Alu -2 310 116 189 0 0 0 chr1 9963142 9963163 -272230501 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1808 162 44 0 chr1 9963163 9963285 -272230379 - AluJo SINE Alu -196 116 1 812 279 70 8 chr1 9963356 9963600 -272230064 + MIR SINE MIR 2 260 -2 31 68 0 0 chr1 9963758 9963817 -272229847 + AT_rich Low_complexity Low_complexity 1 59 0 1686 158 82 0 chr1 9963875 9964154 -272229510 - AluJb SINE Alu -10 302 1 1878 184 113 31 chr1 9964191 9964403 -272229261 + Charlie4a DNA MER1_type 21 214 -1747 2368 66 3 3 chr1 9964403 9964691 -272228973 - AluY SINE Alu -23 288 1 1894 102 91 0 chr1 9964693 9964958 -272228706 - AluSc SINE Alu -18 291 3 1878 184 113 31 chr1 9964958 9965193 -272228471 + Charlie4a DNA MER1_type 214 508 0 1840 170 17 3 chr1 9965512 9965812 -272227852 - AluSx SINE Alu -8 304 1 1116 148 0 0 chr1 9966027 9966189 -272227475 + FRAM SINE Alu 1 160 -16 217 319 28 14 chr1 9967646 9967718 -272225946 + L2 LINE L2 3185 3257 -15 1372 117 73 10 chr1 9967962 9968168 -272225496 + MER20 DNA MER1_type 1 219 0 2483 76 0 13 chr1 9968305 9968620 -272225044 + AluSx SINE Alu 2 312 0 860 153 0 29 chr1 9968753 9968890 -272224774 + FLAM_C SINE Alu 1 133 0 571 210 96 48 chr1 9969550 9969717 -272223947 + MER5B DNA MER1_type 1 175 -3 1532 152 4 4 chr1 9969814 9970057 -272223607 - AluJb SINE Alu -69 243 1 306 328 15 38 chr1 9970090 9970221 -272223443 + MIR SINE MIR 80 207 -55 2329 93 3 3 chr1 9971182 9971493 -272222171 - AluSq SINE Alu -2 311 1 1562 157 75 7 chr1 9973000 9973280 -272220384 - AluJb SINE Alu -13 299 1 813 154 0 8 chr1 9974164 9974294 -272219370 - AluSx SINE Alu -2 310 182 812 117 27 0 chr1 9974292 9974403 -272219261 - AluSx SINE Alu -197 115 2 * 366 291 115 7 chr1 9974409 9974557 -272219107 + MIR SINE MIR 98 261 -1 246 186 0 17 chr1 9975621 9975680 -272217984 + L2 LINE L2 3020 3077 -195 2511 55 0 0 chr1 9978521 9978813 -272214851 + AluSg SINE Alu 1 292 -18 923 110 22 44 chr1 9979116 9979252 -272214412 - FLAM_A SINE Alu 0 133 1 203 116 23 23 chr1 9979319 9979362 -272214302 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2102 125 7 0 chr1 9979416 9979711 -272213953 + AluSq SINE Alu 1 297 -16 1627 175 10 33 chr1 9979722 9980025 -272213639 + AluJo SINE Alu 1 296 -16 2446 74 3 0 chr1 9980798 9981095 -272212569 - AluSg SINE Alu -10 300 3 2419 52 0 3 chr1 9981272 9981558 -272212106 - AluY SINE Alu -26 285 1 369 274 162 11 chr1 9981741 9981920 -272211744 - L3 LINE CR1 -78 1499 1294 258 240 0 27 chr1 9982166 9982241 -272211423 + GA-rich Low_complexity Low_complexity 4 76 0 2280 110 0 3 chr1 9983949 9984257 -272209407 + AluSc SINE Alu 1 307 -2 1690 174 6 34 chr1 9984480 9984801 -272208863 + AluJo SINE Alu 1 312 0 277 354 47 0 chr1 9984925 9985052 -272208612 + MIR SINE MIR 129 261 -1 201 39 0 0 chr1 9986205 9986231 -272207433 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 866 176 7 0 chr1 9986584 9986732 -272206932 - AluJo SINE Alu -162 150 2 723 193 0 59 chr1 9986750 9986885 -272206779 - AluJb SINE Alu -56 256 130 1751 119 8 26 chr1 9986886 9987154 -272206510 - AluSc SINE Alu 0 309 47 2291 102 3 0 chr1 9987376 9987671 -272205993 + AluSq SINE Alu 1 296 -17 1894 86 100 4 chr1 9988421 9988690 -272204974 - AluSg SINE Alu -15 295 1 2384 94 0 10 chr1 9988693 9989001 -272204663 - AluSq SINE Alu -8 305 1 306 267 69 40 chr1 9989027 9989128 -272204536 + MIR SINE MIR 8 111 -151 983 251 34 0 chr1 9989128 9989383 -272204281 - MLT1D LTR MaLR 0 505 217 2343 98 0 0 chr1 9989416 9989713 -272203951 - AluSx SINE Alu -15 297 1 1714 173 3 23 chr1 9989714 9990014 -272203650 - AluJo SINE Alu -18 294 1 829 154 8 0 chr1 9990016 9990139 -272203525 - AluJo/FLAM SINE Alu -188 124 1 698 202 54 24 chr1 9990146 9990314 -272203350 - MLT1D LTR MaLR -312 193 21 893 124 0 29 chr1 9990352 9990489 -272203175 - AluJb SINE Alu -179 133 1 1113 60 0 0 chr1 9990502 9990636 -272203028 - AluY SINE Alu -9 302 169 1142 220 24 16 chr1 9990745 9991000 -272202664 + AluJo SINE Alu 54 310 -2 920 173 0 0 chr1 9991033 9991166 -272202498 - FLAM_A SINE Alu 0 133 1 2386 83 3 0 chr1 9991232 9991532 -272202132 - AluSx SINE Alu -11 301 1 1828 103 4 8 chr1 9992169 9992421 -272201243 + AluSx SINE Alu 47 297 -15 328 355 10 44 chr1 9992432 9992635 -272201029 - L2 LINE L2 -2697 617 422 376 266 78 35 chr1 9993070 9993382 -272200282 - L1MC5 LINE L1 -1 8041 7720 230 74 0 56 chr1 9993465 9993519 -272200145 - L1MC5 LINE L1 -282 7679 7629 2277 105 0 3 chr1 9994092 9994398 -272199266 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr1 9994590 9994620 -272199044 + (T)n Simple_repeat Simple_repeat 1 30 0 1332 119 0 11 chr1 9994881 9995058 -272198606 - AluSx SINE Alu -137 175 1 1084 164 45 0 chr1 9996533 9996710 -272196954 - MER58A DNA MER1_type 0 224 40 533 136 344 24 chr1 9997011 9997136 -272196528 + FAM SINE Alu 3 167 -8 23 0 0 0 chr1 9997136 9997159 -272196505 + AT_rich Low_complexity Low_complexity 1 23 0 2581 215 40 30 chr1 9997302 9997374 -272196290 + L1ME1 LINE L1 5511 5581 -585 2357 99 0 10 chr1 9997374 9997687 -272195977 - AluSg SINE Alu 0 310 1 2581 215 40 30 chr1 9997687 9998257 -272195407 + L1ME1 LINE L1 5581 6160 -6 2156 98 11 3 chr1 9998505 9998790 -272194874 - AluSq SINE Alu -24 289 3 2209 108 0 7 chr1 9998800 9999097 -272194567 - AluSg SINE Alu -15 295 1 901 237 110 4 chr1 9999330 9999558 -272194106 - MIR SINE MIR 0 262 11 2067 125 0 31 chr1 10001002 10001322 -272192342 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr1 10001352 10001381 -272192283 + AT_rich Low_complexity Low_complexity 1 29 0 297 194 0 0 chr1 10002460 10002522 -272191142 - Alu SINE Alu 0 302 241 801 173 15 0 chr1 10002641 10002774 -272190890 + AluJb SINE Alu 148 282 -30 459 0 0 0 chr1 10002777 10002828 -272190836 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 314 208 0 0 chr1 10002838 10002898 -272190766 + AluJ/monomer SINE Alu 1 45 -263 975 174 6 0 chr1 10002907 10003068 -272190596 + AluJb SINE Alu 147 308 -4 2256 86 0 3 chr1 10003068 10003359 -272190305 + AluSg SINE Alu 1 290 -20 1270 277 20 48 chr1 10003721 10004179 -272189485 - L2 LINE L2 -43 3270 2826 1792 126 68 4 chr1 10004731 10005009 -272188655 - AluSx SINE Alu -3 309 14 299 239 137 58 chr1 10005308 10005513 -272188151 + L1ME LINE L1 5385 5605 -516 1524 177 11 14 chr1 10005580 10005863 -272187801 + AluJo SINE Alu 1 282 -30 702 165 0 9 chr1 10006282 10006391 -272187273 + Tigger3(Golem) DNA MER2_type 1 108 -2921 505 76 51 25 chr1 10006382 10006461 -272187203 + Tigger3(Golem) DNA MER2_type 2278 2358 -671 * 1708 142 4 8 chr1 10006584 10006852 -272186812 - AluJo SINE Alu -45 267 1 366 271 57 8 chr1 10006852 10006974 -272186690 + MIR SINE MIR 48 175 -87 2002 119 17 3 chr1 10007280 10007574 -272186090 - AluSx SINE Alu -14 298 1 1045 232 94 80 chr1 10007757 10008330 -272185334 - MLT1G1 LTR MaLR -14 581 1 588 227 110 0 chr1 10008460 10008623 -272185041 - MIR SINE MIR -67 195 15 275 233 33 0 chr1 10008664 10008724 -272184940 - L2 LINE L2 0 3313 3252 23 54 0 0 chr1 10008779 10008816 -272184848 + AT_rich Low_complexity Low_complexity 1 37 0 1820 130 17 17 chr1 10008849 10009148 -272184516 - AluSx SINE Alu -13 299 1 2191 57 19 0 chr1 10009210 10009472 -272184192 + LTR5 LTR ERVK 1 267 -702 4706 121 81 95 chr1 10009483 10010729 -272182935 - pTR5 LTR ERV1 -143 2295 753 5655 84 6 0 chr1 10010729 10011442 -272182222 + LTR5 LTR ERVK 253 969 0 2239 47 18 11 chr1 10011442 10011716 -272181948 - AluSp SINE Alu -37 276 1 365 250 150 19 chr1 10011804 10011964 -272181700 + MIR SINE MIR 13 193 -69 818 193 23 17 chr1 10012125 10012301 -272181363 - AluJb SINE Alu -10 302 126 2122 127 3 3 chr1 10012336 10012627 -272181037 - AluSx SINE Alu -21 291 1 241 342 54 0 chr1 10012792 10012941 -272180723 - MIR SINE MIR -74 188 32 1837 164 7 7 chr1 10013386 10013690 -272179974 + AluJo SINE Alu 1 304 -8 21 57 0 0 chr1 10014226 10014261 -272179403 + GC_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr1 10014481 10014507 -272179157 + GC_rich Low_complexity Low_complexity 1 26 0 448 258 113 42 chr1 10015176 10015389 -272178275 - L1MC4 LINE L1 -6 8036 7809 2383 88 7 0 chr1 10015389 10015694 -272177970 + AluSx SINE Alu 1 307 -5 959 108 31 0 chr1 10016643 10016772 -272176892 - AluSq/x SINE Alu -180 133 1 340 198 159 57 chr1 10016873 10017030 -272176634 + L2 LINE L2 3136 3308 -5 2243 105 0 3 chr1 10018003 10018298 -272175366 - AluSg SINE Alu -16 294 1 1563 158 65 24 chr1 10019535 10019826 -272173838 - AluJo SINE Alu -7 305 3 2392 80 3 3 chr1 10020231 10020532 -272173132 - AluSq SINE Alu -12 301 1 879 85 51 0 chr1 10020532 10020650 -272173014 - AluSq/x SINE Alu -177 136 13 286 103 0 0 chr1 10020650 10020689 -272172975 - Alu SINE Alu -260 39 1 226 204 78 97 chr1 10022683 10022786 -272170878 + L1ME4a LINE L1 5973 6073 -48 1443 191 40 7 chr1 10024129 10024401 -272169263 - AluJb SINE Alu -30 282 2 597 146 0 3 chr1 10024588 10024808 -272168856 + AluJ SINE Alu 1 292 -20 26 30 0 0 chr1 10024911 10024944 -272168720 + AT_rich Low_complexity Low_complexity 1 33 0 517 279 122 13 chr1 10025258 10025487 -272168177 - MIR SINE MIR 0 262 9 204 178 0 0 chr1 10025696 10025741 -272167923 - L2 LINE L2 -5 3308 3264 21 36 0 0 chr1 10026281 10026309 -272167355 + AT_rich Low_complexity Low_complexity 1 28 0 2168 133 0 0 chr1 10026346 10026647 -272167017 + AluSx SINE Alu 1 301 -11 1701 139 100 0 chr1 10026749 10027034 -272166630 + AluSq SINE Alu 1 311 0 237 288 24 16 chr1 10027710 10027835 -272165829 + GA-rich Low_complexity Low_complexity 4 129 0 2357 84 7 0 chr1 10028349 10028646 -272165018 + AluSx SINE Alu 1 299 -13 615 249 62 10 chr1 10028695 10028888 -272164776 + MER106A DNA MER1_type 1 203 -33 2208 96 10 7 chr1 10029019 10029310 -272164354 - AluSq SINE Alu -21 292 1 209 312 32 21 chr1 10029690 10029783 -272163881 + MIR SINE MIR 46 139 -123 2338 95 0 3 chr1 10029906 10030201 -272163463 - AluSg SINE Alu -16 294 1 1112 194 197 13 chr1 10030234 10030544 -272163120 + L1MC4 LINE L1 6757 7123 -919 357 89 0 0 chr1 10030681 10030726 -272162938 - Alu SINE Alu -258 45 1 705 119 68 0 chr1 10030730 10030848 -272162816 + FAM SINE Alu 1 46 -3 823 255 41 28 chr1 10030853 10030948 -272162716 + L1MC4 LINE L1 7130 7222 -820 1797 160 0 25 chr1 10030948 10031267 -272162397 + AluJb SINE Alu 1 311 -1 823 255 41 28 chr1 10031267 10031489 -272162175 + L1MC4 LINE L1 7222 7451 -591 941 199 6 0 chr1 10031502 10031663 -272162001 - AluJb SINE Alu -14 298 137 2399 106 0 0 chr1 10031674 10031976 -272161688 - AluSx SINE Alu -10 302 1 545 247 210 49 chr1 10031976 10032274 -272161390 + L1MC4 LINE L1 7451 7832 -210 2274 111 13 0 chr1 10032274 10032581 -272161083 + AluSx SINE Alu 1 311 -1 545 247 210 49 chr1 10032581 10032687 -272160977 + L1MC4 LINE L1 7832 7920 -122 1880 173 0 0 chr1 10033030 10033342 -272160322 + AluJb SINE Alu 1 312 0 1943 100 48 0 chr1 10033568 10033862 -272159802 + AluSq SINE Alu 1 307 0 2615 60 0 0 chr1 10033900 10034202 -272159462 + AluY SINE Alu 1 302 -9 216 281 49 0 chr1 10034302 10034384 -272159280 - MIR SINE MIR -24 238 153 2006 146 7 7 chr1 10034384 10034693 -272158971 + AluSx SINE Alu 1 309 -3 209 255 0 0 chr1 10034817 10034868 -272158796 - L2 LINE L2 0 3313 3263 1093 292 135 69 chr1 10035084 10036238 -272157426 - L2 LINE L2 -363 2951 1674 2172 110 20 13 chr1 10036238 10036537 -272157127 + AluSx SINE Alu 1 301 -11 1093 292 135 69 chr1 10036537 10036874 -272156790 - L2 LINE L2 -1640 1674 1361 1221 212 0 9 chr1 10037150 10037372 -272156292 + MER58A DNA MER1_type 3 222 -2 898 201 27 5 chr1 10037383 10037567 -272156097 + MER5A DNA MER1_type 1 188 -1 196 303 66 0 chr1 10037598 10037674 -272155990 - L2 LINE L2 -74 3239 3159 668 266 128 14 chr1 10037776 10038104 -272155560 - L2 LINE L2 -300 2972 2590 2271 116 7 0 chr1 10040139 10040449 -272153215 + AluSx SINE Alu 1 312 0 1719 174 26 3 chr1 10040971 10041275 -272152389 - 7SLRNA srpRNA srpRNA 0 320 10 233 215 27 87 chr1 10044592 10044741 -272148923 + A-rich Low_complexity Low_complexity 2 141 0 410 52 0 143 chr1 10046023 10046063 -272147601 + MER41B LTR ERV1 482 507 -128 2247 106 20 0 chr1 10046063 10046365 -272147299 - AluSx SINE Alu -4 308 1 410 52 0 143 chr1 10046365 10046401 -272147263 + MER41B LTR ERV1 507 547 -88 446 237 203 0 chr1 10046577 10046695 -272146969 - FLAM_A SINE Alu 0 142 1 2117 113 0 0 chr1 10047480 10047794 -272145870 - AluSx SINE Alu 0 314 1 21 0 0 0 chr1 10048143 10048164 -272145500 + AT_rich Low_complexity Low_complexity 1 21 0 234 182 0 0 chr1 10048612 10048678 -272144986 + T-rich Low_complexity Low_complexity 1 66 0 988 0 0 0 chr1 10048678 10048783 -272144881 - U6 snRNA snRNA -2 105 1 440 106 0 0 chr1 10048808 10048874 -272144790 - Alu SINE Alu -251 67 2 21 0 0 0 chr1 10050881 10050902 -272142762 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 10052861 10052886 -272140778 + AT_rich Low_complexity Low_complexity 1 25 0 1952 134 29 0 chr1 10052886 10053162 -272140502 - AluSx SINE Alu -27 285 2 2281 94 10 3 chr1 10054057 10054355 -272139309 + AluSc SINE Alu 1 300 -9 2378 71 7 7 chr1 10056025 10056320 -272137344 - AluY SINE Alu -16 295 1 1791 83 26 0 chr1 10056874 10057104 -272136560 - AluSc SINE Alu -18 291 56 1182 108 0 6 chr1 10057106 10057273 -272136391 + AluY SINE Alu 139 304 -7 926 118 7 0 chr1 10057453 10057588 -272136076 + L1PA8 LINE L1 6032 6167 -5 198 91 0 0 chr1 10057588 10057621 -272136043 + (TTTAA)n Simple_repeat Simple_repeat 1 33 0 556 251 56 101 chr1 10057696 10057838 -272135826 - L2 LINE L2 0 3313 3166 2051 135 0 0 chr1 10057838 10058147 -272135517 - AluSx SINE Alu 0 309 1 556 251 56 101 chr1 10058147 10058361 -272135303 - L2 LINE L2 -147 3166 2972 24 0 0 0 chr1 10059015 10059039 -272134625 + AT_rich Low_complexity Low_complexity 1 24 0 406 186 0 0 chr1 10059515 10059585 -272134079 + AluJ/FRAM SINE Alu 224 293 -9 1245 153 6 0 chr1 10060325 10060508 -272133156 + AluSg/x SINE Alu 70 253 -57 2361 102 0 0 chr1 10061410 10061704 -272131960 + AluSx SINE Alu 1 294 -18 2193 110 7 19 chr1 10062865 10063036 -272130628 - AluSx SINE Alu -8 304 137 2092 129 10 7 chr1 10063036 10063345 -272130319 - AluSx SINE Alu -2 310 1 2193 110 7 19 chr1 10063345 10063481 -272130183 - AluSx SINE Alu -175 137 1 999 157 7 7 chr1 10063503 10063656 -272130008 - FRAM SINE Alu -23 153 1 2620 52 0 3 chr1 10064517 10064824 -272128840 - AluY SINE Alu -5 306 1 320 286 129 7 chr1 10065046 10065186 -272128478 - L3 LINE CR1 -127 1450 1294 258 240 0 27 chr1 10065432 10065507 -272128157 + GA-rich Low_complexity Low_complexity 4 76 0 2293 110 0 3 chr1 10067215 10067523 -272126141 + AluSc SINE Alu 1 307 -2 1049 177 0 31 chr1 10067746 10067938 -272125726 + AluJo SINE Alu 1 186 -126 1078 153 139 0 chr1 10068046 10068248 -272125416 + AluJo SINE Alu 63 292 -20 653 196 8 23 chr1 10068337 10068470 -272125194 - FLAM_C SINE Alu -1 132 2 2135 112 0 0 chr1 10068479 10068756 -272124908 - AluSx SINE Alu -15 297 21 2227 88 13 13 chr1 10069065 10069370 -272124294 - AluSp SINE Alu -8 305 1 249 277 234 7 chr1 10069906 10070047 -272123617 - MIR SINE MIR -66 196 24 2524 80 0 0 chr1 10070988 10071299 -272122365 - AluY SINE Alu 0 311 1 724 135 35 28 chr1 10071332 10071473 -272122191 + FLAM_C SINE Alu 2 143 0 22 0 0 0 chr1 10071872 10071894 -272121770 + AT_rich Low_complexity Low_complexity 1 22 0 3623 126 34 56 chr1 10072380 10072391 -272121273 + Tigger3(Golem) DNA MER2_type 2386 2396 -632 2228 114 0 19 chr1 10072391 10072708 -272120956 + AluSx SINE Alu 1 311 -1 3623 126 34 56 chr1 10072708 10072773 -272120891 + Tigger3(Golem) DNA MER2_type 2396 2461 -567 2141 112 3 7 chr1 10072773 10073069 -272120595 - AluSq SINE Alu -12 301 7 3623 126 34 56 chr1 10073069 10073648 -272120016 + Tigger3(Golem) DNA MER2_type 2461 3027 -1 1518 142 0 124 chr1 10073709 10073858 -272119806 + AluJb SINE Alu 1 88 -224 2154 112 10 0 chr1 10073858 10074152 -272119512 + AluSx SINE Alu 1 297 -15 1518 142 0 124 chr1 10074152 10074332 -272119332 + AluJb SINE Alu 88 289 -23 21 0 0 0 chr1 10074403 10074424 -272119240 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 83 14 chr1 10074798 10074870 -272118794 + L2 LINE L2 3127 3203 -69 189 175 0 0 chr1 10075328 10075368 -272118296 + (CA)n Simple_repeat Simple_repeat 2 41 0 1922 143 0 4 chr1 10075681 10075961 -272117703 + AluSx SINE Alu 1 279 -33 1091 93 0 70 chr1 10076074 10076246 -272117418 - AluSq SINE Alu -53 260 101 655 138 0 0 chr1 10076300 10076394 -272117270 + AluSg SINE Alu 2 95 -215 188 35 35 0 chr1 10076394 10076423 -272117241 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2238 110 0 0 chr1 10076515 10076807 -272116857 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 10076807 10076837 -272116827 + AT_rich Low_complexity Low_complexity 1 30 0 180 200 0 0 chr1 10076978 10077018 -272116646 + (TA)n Simple_repeat Simple_repeat 1 40 0 1480 171 23 63 chr1 10077418 10077717 -272115947 + AluJb SINE Alu 1 287 -25 241 286 16 0 chr1 10077793 10077856 -272115808 + L2 LINE L2 3234 3297 -16 2079 132 0 3 chr1 10077916 10078219 -272115445 - AluSx SINE Alu -10 302 1 2078 151 0 0 chr1 10078278 10078583 -272115081 + AluSx SINE Alu 1 305 -7 2585 59 0 3 chr1 10078846 10079152 -272114512 - AluY SINE Alu -6 305 1 690 296 37 21 chr1 10080030 10080092 -272113572 - MIR SINE MIR 0 262 203 1836 166 0 7 chr1 10080092 10080388 -272113276 - AluJo SINE Alu -18 294 1 690 296 37 21 chr1 10080388 10080568 -272113096 - MIR SINE MIR -59 203 16 2052 125 0 20 chr1 10080722 10081025 -272112639 + AluSq SINE Alu 1 297 -16 1808 172 0 3 chr1 10081035 10081364 -272112300 + AluJb SINE Alu 1 328 0 2220 102 0 0 chr1 10081407 10081712 -272111952 + AluSx SINE Alu 1 305 0 2157 119 3 0 chr1 10081922 10082216 -272111448 - AluSq SINE Alu -18 295 1 2045 120 10 13 chr1 10082480 10082788 -272110876 - AluSx SINE Alu -5 307 1 1276 214 56 4 chr1 10082844 10083111 -272110553 - AluJo SINE Alu -31 281 1 1203 139 0 0 chr1 10083155 10083327 -272110337 + AluSg/x SINE Alu 124 295 -15 876 163 0 0 chr1 10083560 10083689 -272109975 + FLAM_C SINE Alu 3 131 -12 1852 157 3 7 chr1 10083750 10084049 -272109615 - AluJo SINE Alu -14 298 1 432 245 185 0 chr1 10084829 10084980 -272108684 + L2 LINE L2 2449 2627 -687 1796 178 0 18 chr1 10085168 10085478 -272108186 + AluJb SINE Alu 1 305 0 1940 110 88 25 chr1 10085578 10085895 -272107769 + MER1B DNA MER1_type 1 337 0 197 217 0 67 chr1 10085987 10086047 -272107617 + MIR SINE MIR 120 175 -87 417 238 151 101 chr1 10086101 10086504 -272107160 - L2 LINE L2 0 3313 2784 1850 153 0 14 chr1 10086504 10086798 -272106866 + AluSx SINE Alu 1 290 -22 417 238 151 101 chr1 10086798 10086878 -272106786 - L2 LINE L2 -529 2784 2710 1263 284 152 10 chr1 10087029 10087621 -272106043 - L2 LINE L2 -647 2667 1992 2610 44 0 0 chr1 10088551 10088847 -272104817 + AluY SINE Alu 1 296 -15 2526 71 10 0 chr1 10088851 10089161 -272104503 + AluSp SINE Alu 1 313 0 407 300 71 29 chr1 10089778 10089948 -272103716 + MIR SINE MIR 20 196 -66 251 179 0 18 chr1 10090084 10090140 -272103524 - AluSp/q SINE Alu 0 303 249 2340 90 3 13 chr1 10090147 10090457 -272103207 - AluSx SINE Alu -5 307 1 381 89 0 0 chr1 10090743 10090785 -272102879 + (TC)n Simple_repeat Simple_repeat 2 46 -11 279 0 0 0 chr1 10090785 10090816 -272102848 + (CA)n Simple_repeat Simple_repeat 1 31 0 381 89 0 0 chr1 10090816 10090829 -272102835 + (TC)n Simple_repeat Simple_repeat 45 57 0 321 255 133 0 chr1 10091193 10091291 -272102373 + MIR SINE MIR 80 190 -72 2142 113 0 3 chr1 10091296 10091601 -272102063 - AluSx SINE Alu 0 304 1 1951 139 0 17 chr1 10091995 10092132 -272101532 + AluJb SINE Alu 1 139 -171 2244 98 10 7 chr1 10092132 10092428 -272101236 + AluSx SINE Alu 1 297 -15 1951 139 0 17 chr1 10092428 10092605 -272101059 + AluJb SINE Alu 139 310 0 2424 84 0 0 chr1 10093048 10093345 -272100319 - AluY SINE Alu -14 297 1 1981 169 68 39 chr1 10093530 10093912 -272099752 + MSTB LTR MaLR 1 397 -29 1785 82 0 9 chr1 10093912 10094144 -272099520 + MER30 DNA MER1_type 1 230 0 1981 169 68 39 chr1 10094144 10094175 -272099489 + MSTB LTR MaLR 397 426 0 2341 82 0 0 chr1 10094190 10094502 -272099162 - AluSc SINE Alu 0 312 1 211 172 35 0 chr1 10094536 10094594 -272099070 + A-rich Low_complexity Low_complexity 4 63 0 2060 127 0 3 chr1 10094598 10094913 -272098751 + AluJb SINE Alu 1 314 0 688 262 139 36 chr1 10095039 10095445 -272098219 + MLT1G1 LTR MaLR 1 496 -71 2210 91 20 17 chr1 10095445 10095741 -272097923 - AluSx SINE Alu -15 297 1 688 262 139 36 chr1 10095741 10095791 -272097873 + MLT1G1 LTR MaLR 496 539 -28 240 228 30 30 chr1 10095793 10095894 -272097770 + MLT1G1-int LTR MaLR 1 101 -1270 340 338 31 14 chr1 10095902 10096124 -272097540 + MLT1G1-int LTR MaLR 290 515 -856 28 0 0 0 chr1 10096129 10096157 -272097507 + AT_rich Low_complexity Low_complexity 1 28 0 2370 87 3 0 chr1 10096236 10096536 -272097128 + AluSx SINE Alu 1 301 -11 200 97 65 16 chr1 10096784 10096846 -272096818 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 302 277 8 50 chr1 10096966 10097019 -272096645 + MIR SINE MIR 148 202 -60 2158 109 0 0 chr1 10097019 10097338 -272096326 + AluY SINE Alu 1 319 0 302 277 8 50 chr1 10097338 10097402 -272096262 + MIR SINE MIR 202 261 -1 347 294 37 37 chr1 10097470 10097606 -272096058 - MIR3 SINE MIR -5 203 68 392 308 77 16 chr1 10097785 10097967 -272095697 - MIR SINE MIR -52 210 18 1534 102 9 14 chr1 10098062 10098278 -272095386 + AluSg/x SINE Alu 74 288 -22 2007 108 0 0 chr1 10098902 10099162 -272094502 + AluSc SINE Alu 29 288 -21 2315 106 0 0 chr1 10099454 10099755 -272093909 + AluSg SINE Alu 2 302 -8 2337 96 10 0 chr1 10100091 10100392 -272093272 + AluSx SINE Alu 1 304 -8 1959 106 26 70 chr1 10100401 10100713 -272092951 + AluSx SINE Alu 1 298 -14 288 217 0 0 chr1 10101545 10101614 -272092050 - AluSp/q SINE Alu -2 301 233 1330 178 82 4 chr1 10101746 10101977 -272091687 - AluJo SINE Alu -63 249 1 2570 53 0 37 chr1 10101992 10102313 -272091351 - AluY SINE Alu -2 309 1 251 241 86 0 chr1 10102450 10102508 -272091156 + L2 LINE L2 3208 3270 -2 370 216 198 30 chr1 10102526 10102693 -272090971 - L1M4 LINE L1 -795 5351 5157 240 321 84 65 chr1 10102864 10103185 -272090479 + L2 LINE L2 2328 2654 -660 470 241 153 76 chr1 10103475 10103670 -272089994 + L1MC5 LINE L1 6920 7098 -863 2126 114 0 16 chr1 10103670 10103985 -272089679 - AluSx SINE Alu -2 310 1 470 241 153 76 chr1 10103985 10104069 -272089595 + L1MC5 LINE L1 7098 7174 -787 1469 120 5 0 chr1 10104069 10104285 -272089379 - AluSq SINE Alu -20 293 77 470 241 153 76 chr1 10104285 10104506 -272089158 + L1MC5 LINE L1 7174 7460 -501 26 0 0 0 chr1 10104657 10104683 -272088981 + AT_rich Low_complexity Low_complexity 1 26 0 225 51 0 0 chr1 10104932 10104971 -272088693 + Alu SINE Alu 128 166 0 312 226 21 32 chr1 10104992 10105010 -272088654 + L1MC5 LINE L1 7568 7585 -376 1889 133 7 13 chr1 10105010 10105319 -272088345 - AluJb SINE Alu -5 307 1 312 226 21 32 chr1 10105319 10105393 -272088271 + L1MC5 LINE L1 7585 7659 -302 24 0 0 0 chr1 10105984 10106008 -272087656 + AT_rich Low_complexity Low_complexity 1 24 0 1061 182 107 36 chr1 10106522 10106802 -272086862 - AluJb SINE Alu -2 300 1 2242 158 0 0 chr1 10106829 10107165 -272086499 + MER1B DNA MER1_type 2 337 0 1400 191 14 27 chr1 10107282 10107575 -272086089 + AluJo SINE Alu 1 289 -23 2135 93 0 10 chr1 10107590 10107890 -272085774 + AluSg SINE Alu 1 297 -13 800 178 7 27 chr1 10107912 10108058 -272085606 + AluJb SINE Alu 13 155 -157 2300 91 3 0 chr1 10108162 10108469 -272085195 + AluSc SINE Alu 1 308 -1 1707 121 21 25 chr1 10108719 10109033 -272084631 - AluSg SINE Alu 0 313 1 250 310 109 11 chr1 10109502 10109686 -272083978 + L2 LINE L2 2681 2882 -432 1077 134 0 0 chr1 10110013 10110170 -272083494 + AluSg/x SINE Alu 125 281 -31 2219 112 0 0 chr1 10110607 10110910 -272082754 + AluSx SINE Alu 1 303 -9 2034 140 0 0 chr1 10111042 10111349 -272082315 + AluSq SINE Alu 1 307 -6 557 168 103 52 chr1 10111350 10111505 -272082159 - AluJo SINE Alu -36 276 114 590 0 14 0 chr1 10111563 10111633 -272082031 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1424 186 10 35 chr1 10111633 10111783 -272081881 - AluJo SINE Alu -29 283 142 2357 67 3 7 chr1 10111783 10112080 -272081584 - AluSp SINE Alu -13 300 5 1424 186 10 35 chr1 10112080 10112219 -272081445 - AluJo SINE Alu -170 142 1 2119 103 7 7 chr1 10112229 10112530 -272081134 - AluSp SINE Alu -12 301 1 2192 92 7 0 chr1 10112532 10112825 -272080839 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 10113052 10113081 -272080583 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 10113139 10113162 -272080502 + AT_rich Low_complexity Low_complexity 1 23 0 2177 112 0 0 chr1 10113284 10113579 -272080085 + AluSx SINE Alu 1 295 -17 910 275 37 68 chr1 10114015 10114388 -272079276 - L2 LINE L2 -5 3308 2948 1750 120 88 0 chr1 10114388 10114671 -272078993 + AluSx SINE Alu 1 308 -4 910 275 37 68 chr1 10114671 10114726 -272078938 - L2 LINE L2 -365 2948 2893 2323 103 0 0 chr1 10114731 10115043 -272078621 + AluSx SINE Alu 1 312 0 762 198 78 12 chr1 10115851 10116018 -272077646 + MIR SINE MIR 69 246 -16 1630 164 17 27 chr1 10116156 10116454 -272077210 + AluJb SINE Alu 1 295 -17 2389 66 3 0 chr1 10116529 10116831 -272076833 + AluSp SINE Alu 1 303 -10 323 23 23 0 chr1 10116831 10116875 -272076789 + (TA)n Simple_repeat Simple_repeat 1 45 0 2166 114 0 0 chr1 10117126 10117416 -272076248 + AluSg SINE Alu 3 292 -18 2307 94 0 0 chr1 10117417 10117725 -272075939 + AluSg SINE Alu 1 308 -2 1289 204 68 11 chr1 10117870 10118150 -272075514 - AluJo SINE Alu -6 296 1 326 238 0 10 chr1 10119080 10119164 -272074500 - L1MC4 LINE L1 -1339 6983 1984 1148 151 0 33 chr1 10119188 10119400 -272074264 - AluJo SINE Alu -103 209 5 32 0 0 0 chr1 10121169 10121201 -272072463 + GC_rich Low_complexity Low_complexity 1 32 0 2118 98 14 0 chr1 10122772 10123068 -272070596 - AluSq SINE Alu -13 300 1 1997 103 3 40 chr1 10123350 10123671 -272069993 + AluSx SINE Alu 3 311 -1 225 235 0 0 chr1 10124021 10124072 -272069592 + L1 LINE L1 4284 4334 -1812 1448 152 78 19 chr1 10124103 10124372 -272069292 - AluJb SINE Alu -27 285 1 1707 164 6 35 chr1 10124419 10124737 -272068927 + AluJo SINE Alu 1 309 -3 2037 96 0 4 chr1 10124771 10125052 -272068612 + AluSx SINE Alu 20 299 -13 381 170 2 5 chr1 10125388 10125484 -272068180 - AluS SINE Alu 0 301 228 216 97 0 0 chr1 10125509 10125540 -272068124 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1968 104 0 17 chr1 10125542 10125829 -272067835 - AluSx SINE Alu -30 282 1 1787 137 0 65 chr1 10125849 10126040 -272067624 - AluSx SINE Alu -11 301 138 2048 122 3 0 chr1 10126040 10126335 -272067329 + AluSp SINE Alu 1 296 -17 1787 137 0 65 chr1 10126335 10126465 -272067199 - AluSx SINE Alu -174 138 1 1964 110 0 14 chr1 10126523 10126814 -272066850 - AluSg SINE Alu -14 296 10 938 202 0 0 chr1 10126878 10127046 -272066618 + FAM SINE Alu 2 169 -6 1851 154 3 0 chr1 10127071 10127363 -272066301 + AluSq SINE Alu 1 293 -20 1226 142 5 10 chr1 10128119 10128316 -272065348 - AluSx SINE Alu -91 221 26 1629 129 30 113 chr1 10128572 10128661 -272065003 + MER7A DNA MER2_type 2 97 -2941 2175 98 0 0 chr1 10128661 10128948 -272064716 + AluSg SINE Alu 1 287 -23 1629 129 30 113 chr1 10128948 10129229 -272064435 + MER7A DNA MER2_type 97 339 -7 1502 171 33 0 chr1 10130072 10130346 -272063318 + AluJo SINE Alu 1 283 -29 208 267 44 67 chr1 10130412 10130502 -272063162 - MIR SINE MIR -58 204 117 332 231 17 34 chr1 10130504 10130612 -272063052 + L1ME4a LINE L1 5743 5850 -271 798 169 0 22 chr1 10130612 10130748 -272062916 + FLAM_C SINE Alu 1 133 0 1945 125 4 0 chr1 10130968 10131269 -272062395 + AluSx SINE Alu 1 302 0 2038 117 0 19 chr1 10131274 10131410 -272062254 + AluSg SINE Alu 1 138 -172 2244 86 0 3 chr1 10131410 10131701 -272061963 + AluY SINE Alu 1 290 -21 2038 117 0 19 chr1 10131701 10131880 -272061784 + AluSg SINE Alu 138 310 0 388 297 128 7 chr1 10132094 10132242 -272061422 + L1ME4a LINE L1 5874 6039 -82 1328 137 11 48 chr1 10132274 10132544 -272061120 + AluJb SINE Alu 53 312 0 834 152 7 7 chr1 10132880 10133018 -272060646 - AluJo SINE Alu -174 138 1 1996 139 0 0 chr1 10133038 10133341 -272060323 - AluSq SINE Alu -10 303 1 1868 153 0 10 chr1 10133405 10133712 -272059952 - AluJb SINE Alu -4 308 5 187 173 77 58 chr1 10135035 10135087 -272058577 + MIR SINE MIR 33 85 -123 2073 102 0 3 chr1 10135130 10135449 -272058215 - AluSg SINE Alu 0 318 1 2273 92 0 3 chr1 10135556 10135861 -272057803 - AluSq SINE Alu -9 304 1 498 49 0 0 chr1 10135986 10136047 -272057617 - AluY SINE Alu -256 62 2 412 156 46 0 chr1 10136380 10136489 -272057175 + (TG)n Simple_repeat Simple_repeat 2 115 0 852 254 95 13 chr1 10136724 10136956 -272056708 + MLT1G1 LTR MaLR 2 252 -343 356 202 11 34 chr1 10136961 10137050 -272056614 + MLT1H LTR MaLR 463 549 0 999 256 151 32 chr1 10137079 10137557 -272056107 - L2 LINE L2 -19 3294 2779 811 168 0 126 chr1 10137562 10137752 -272055912 - FRAM SINE Alu 0 166 1 1921 118 13 25 chr1 10137775 10138090 -272055574 - AluSq SINE Alu -1 312 2 886 173 6 6 chr1 10138093 10138249 -272055415 - AluJb SINE Alu -22 290 135 2384 92 0 6 chr1 10138255 10138569 -272055095 - AluSx SINE Alu 0 312 1 1349 250 81 40 chr1 10138572 10138760 -272054904 - L2 LINE L2 -608 2706 2527 2168 101 0 0 chr1 10138760 10139056 -272054608 - AluSx SINE Alu -16 296 1 1349 250 81 40 chr1 10139056 10139363 -272054301 - L2 LINE L2 -787 2527 2191 186 123 31 138 chr1 10139362 10139427 -272054237 + MIR3 SINE MIR 123 180 -28 * 221 270 60 30 chr1 10139563 10139604 -272054060 + MIR SINE MIR 159 197 -65 2479 54 0 0 chr1 10139604 10139901 -272053763 + AluY SINE Alu 1 297 -14 221 270 60 30 chr1 10139901 10139959 -272053705 + MIR SINE MIR 197 261 -1 1991 116 3 44 chr1 10140054 10140373 -272053291 + AluSx SINE Alu 1 306 -6 2135 104 0 0 chr1 10141171 10141460 -272052204 - AluSq SINE Alu -24 289 1 363 98 0 0 chr1 10141464 10141525 -272052139 + (TA)n Simple_repeat Simple_repeat 1 61 0 2173 79 10 3 chr1 10141525 10141817 -272051847 - AluSx SINE Alu -18 294 1 465 297 54 7 chr1 10145343 10145491 -272048173 + MIR SINE MIR 16 170 -92 240 167 71 0 chr1 10145742 10145784 -272047880 + MSTB LTR MaLR 382 426 0 3660 166 20 97 chr1 10145784 10145866 -272047798 + L1MB4 LINE L1 5221 5308 -872 2309 89 0 13 chr1 10145866 10146179 -272047485 + AluSc SINE Alu 1 309 0 3660 166 20 97 chr1 10146179 10147128 -272046536 + L1MB4 LINE L1 5308 6180 0 2379 45 0 0 chr1 10147252 10147583 -272046081 - AluY SINE Alu 0 311 1 2313 43 0 0 chr1 10147946 10148226 -272045438 - AluY SINE Alu -31 280 1 189 0 0 0 chr1 10148287 10148308 -272045356 + (A)n Simple_repeat Simple_repeat 1 21 0 2487 59 0 3 chr1 10148909 10149213 -272044451 - AluSq SINE Alu -10 303 1 2134 104 3 0 chr1 10149219 10149518 -272044146 - AluSg SINE Alu -10 300 1 2365 37 7 13 chr1 10150137 10150435 -272043229 - AluY SINE Alu -15 296 1 1650 159 97 0 chr1 10150537 10150827 -272042837 - MER7A DNA MER2_type -29 317 2 772 273 30 0 chr1 10151106 10151304 -272042360 + MIR SINE MIR 6 209 -53 207 100 0 0 chr1 10151720 10151750 -272041914 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2171 105 0 3 chr1 10151750 10152025 -272041639 - AluSg SINE Alu -27 283 8 749 169 70 7 chr1 10152025 10152167 -272041497 - AluJb SINE Alu -25 287 137 2137 116 20 0 chr1 10153606 10153899 -272039765 - AluSx SINE Alu -13 299 1 2554 68 0 0 chr1 10154712 10155020 -272038644 - AluY SINE Alu -2 309 2 2355 87 7 0 chr1 10155744 10156042 -272037622 + AluSc SINE Alu 2 301 -8 2292 74 11 0 chr1 10156157 10156474 -272037190 - AluSp SINE Alu 0 320 1 2185 119 0 14 chr1 10156491 10156649 -272037015 - AluSx SINE Alu -21 291 137 2284 109 0 10 chr1 10156649 10156660 -272037004 - AluSx SINE Alu -3 309 299 270 0 0 0 chr1 10156660 10156690 -272036974 + (TG)n Simple_repeat Simple_repeat 1 30 0 2284 109 0 10 chr1 10156690 10156990 -272036674 - AluSx SINE Alu -13 299 1 2185 119 0 14 chr1 10156990 10157126 -272036538 - AluSx SINE Alu -175 137 1 1310 269 199 11 chr1 10157691 10158593 -272035071 - L2 LINE L2 -55 3258 2179 287 302 19 99 chr1 10158593 10158809 -272034855 + MER20B DNA MER1_type 19 218 -1 234 222 81 30 chr1 10158810 10158909 -272034755 - L2 LINE L2 -1131 2183 2080 730 200 7 7 chr1 10159118 10159258 -272034406 + FRAM SINE Alu 1 140 -36 2186 124 0 22 chr1 10159258 10159573 -272034091 - AluSx SINE Alu -4 308 1 32 33 0 33 chr1 10159586 10159605 -272034059 + AT_rich Low_complexity Low_complexity 1 19 -40 1508 130 188 0 chr1 10159605 10159868 -272033796 + AluSx SINE Alu 1 308 0 32 33 0 33 chr1 10159868 10159908 -272033756 + AT_rich Low_complexity Low_complexity 19 59 0 2335 85 0 3 chr1 10159949 10160244 -272033420 - AluSc SINE Alu -15 294 1 724 143 0 0 chr1 10160258 10160363 -272033301 - U6 snRNA snRNA -1 106 2 879 179 21 74 chr1 10160364 10160554 -272033110 + AluJo SINE Alu 102 281 -31 32 43 0 0 chr1 10160554 10160600 -272033064 + AT_rich Low_complexity Low_complexity 1 46 0 1399 96 50 29 chr1 10160769 10161009 -272032655 + L1PA16 LINE L1 5922 6166 0 1960 120 0 18 chr1 10161026 10161161 -272032503 + AluSq SINE Alu 3 139 -174 2267 108 0 0 chr1 10161161 10161466 -272032198 + AluY SINE Alu 3 307 -4 1960 120 0 18 chr1 10161466 10161613 -272032051 + AluSq SINE Alu 139 280 -33 544 247 74 11 chr1 10161623 10161813 -272031851 - L1MEd LINE L1 -5016 1103 902 2068 143 7 0 chr1 10161813 10162127 -272031537 - AluSx SINE Alu 0 316 1 2072 109 39 3 chr1 10162151 10162434 -272031230 - AluSx SINE Alu -17 295 3 2088 124 3 0 chr1 10162815 10163098 -272030566 + AluSx SINE Alu 1 284 -28 531 138 0 129 chr1 10163729 10163774 -272029890 - L1MB5 LINE L1 0 6174 6125 243 0 0 0 chr1 10163774 10163801 -272029863 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2225 101 0 3 chr1 10163801 10164087 -272029577 - AluSq SINE Alu -28 285 1 531 138 0 129 chr1 10164087 10164156 -272029508 - L1MB5 LINE L1 -47 6127 6074 1898 125 0 83 chr1 10164188 10164500 -272029164 - AluSx SINE Alu -26 286 1 2021 143 3 3 chr1 10164856 10165163 -272028501 + AluSx SINE Alu 1 307 -5 780 124 0 0 chr1 10166142 10166255 -272027409 + AluSg/x SINE Alu 181 293 -17 1242 128 0 15 chr1 10166256 10166451 -272027213 + AluSq SINE Alu 122 313 0 2014 136 14 0 chr1 10167482 10167769 -272025895 - AluJo SINE Alu -21 291 1 2321 41 0 44 chr1 10168726 10169043 -272024621 - AluY SINE Alu 0 304 1 2437 93 0 3 chr1 10169396 10169707 -272023957 - AluSx SINE Alu -2 310 1 2226 90 4 0 chr1 10170635 10170932 -272022732 - AluSc SINE Alu 0 302 5 1529 159 10 68 chr1 10170937 10171113 -272022551 - AluJb SINE Alu -11 301 149 2067 123 3 20 chr1 10171113 10171405 -272022259 + AluSx SINE Alu 1 287 -25 1529 159 10 68 chr1 10171405 10171536 -272022128 - AluJb SINE Alu -163 149 12 1847 160 0 0 chr1 10171916 10172204 -272021460 + AluJb SINE Alu 23 310 -2 2192 113 0 22 chr1 10172382 10172693 -272020971 - AluSx SINE Alu -8 304 1 493 227 19 2 chr1 10172977 10173137 -272020527 + MIR SINE MIR 67 262 0 273 75 0 0 chr1 10173309 10173349 -272020315 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 10173348 10173369 -272020295 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 427 213 57 41 chr1 10173446 10173568 -272020096 - L1ME4a LINE L1 -22 6099 5976 2103 120 0 13 chr1 10173577 10173878 -272019786 - AluSq SINE Alu -16 297 1 242 272 140 0 chr1 10173885 10173999 -272019665 - L1ME4a LINE L1 -376 5745 5616 239 191 0 0 chr1 10174002 10174044 -272019620 + LTR50 LTR ERVL 7 48 -747 1507 126 39 9 chr1 10174061 10174160 -272019504 - AluSx SINE Alu -75 237 142 2203 99 0 14 chr1 10174160 10174340 -272019324 - AluSc SINE Alu 0 311 135 2319 86 7 0 chr1 10174340 10174632 -272019032 - AluSp SINE Alu -19 294 1 2203 99 0 14 chr1 10174632 10174766 -272018898 - AluSc SINE Alu -176 135 1 1507 126 39 9 chr1 10174766 10174895 -272018769 - AluSx SINE Alu -170 142 1 1820 156 54 0 chr1 10174915 10175210 -272018454 - AluJo SINE Alu -1 311 1 359 275 111 2 chr1 10175308 10175653 -272018011 + LTR50 LTR ERVL 108 654 -141 2114 120 3 3 chr1 10175654 10175954 -272017710 - AluSx SINE Alu -12 300 1 302 280 27 0 chr1 10175956 10176031 -272017633 - L1ME4a LINE L1 -506 5615 5539 1973 96 25 32 chr1 10176173 10176491 -272017173 - AluSg SINE Alu 0 318 3 2606 44 0 7 chr1 10177293 10177590 -272016074 - AluY SINE Alu -16 295 1 2325 101 0 3 chr1 10177592 10177890 -272015774 - AluSc SINE Alu -12 297 1 398 127 0 0 chr1 10178257 10178312 -272015352 - AluSp/q SINE Alu -38 265 211 517 205 137 0 chr1 10178514 10178631 -272015033 - AluJo SINE Alu -178 134 2 2009 144 0 22 chr1 10179531 10179850 -272013814 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 10179902 10179925 -272013739 + (G)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr1 10180324 10180354 -272013310 + AT_rich Low_complexity Low_complexity 1 30 0 2127 106 0 17 chr1 10180747 10181040 -272012624 - AluSx SINE Alu -19 293 6 2306 114 0 0 chr1 10181775 10182083 -272011581 - AluSx SINE Alu -3 309 2 2314 53 0 11 chr1 10182626 10182910 -272010754 - AluY SINE Alu -2 309 29 681 219 0 71 chr1 10183374 10183484 -272010180 + MER104 DNA Tc2 5 98 -1800 2244 117 3 3 chr1 10183484 10183792 -272009872 - AluSg SINE Alu -2 308 1 681 219 0 71 chr1 10183792 10183864 -272009800 + MER104 DNA Tc2 98 174 -6 301 221 55 63 chr1 10184007 10184134 -272009530 + L2 LINE L2 2934 3059 -254 1087 169 20 55 chr1 10184561 10184815 -272008849 + MLT1D LTR MaLR 1 245 -260 812 169 131 121 chr1 10184795 10184836 -272008828 + MLT1D LTR MaLR 185 224 -281 * 1871 146 14 0 chr1 10184836 10185123 -272008541 - AluSx SINE Alu -21 291 1 1695 146 19 11 chr1 10185126 10185393 -272008271 - AluSx SINE Alu -16 296 28 812 169 131 121 chr1 10185393 10185567 -272008097 + MLT1D LTR MaLR 225 410 -95 2215 90 14 0 chr1 10185567 10185855 -272007809 - AluSx SINE Alu -20 292 1 812 169 131 121 chr1 10185855 10185948 -272007716 + MLT1D LTR MaLR 410 501 -4 1701 183 109 10 chr1 10186669 10187103 -272006561 - MLT1D LTR MaLR -5 462 1 406 332 31 38 chr1 10187133 10187422 -272006242 + ERVL LTR ERVL 1025 1311 -4453 1048 269 86 15 chr1 10187676 10188212 -272005452 + L1M4 LINE L1 2512 3085 -3061 2116 90 29 42 chr1 10188225 10188536 -272005128 + AluSp SINE Alu 1 307 -6 1534 262 158 32 chr1 10188550 10188831 -272004833 + L1M4 LINE L1 3316 3560 -2586 2127 116 27 3 chr1 10188831 10189132 -272004532 - AluSx SINE Alu -4 308 1 1534 262 158 32 chr1 10189132 10189712 -272003952 + L1M4 LINE L1 3560 4285 -1861 2425 88 0 16 chr1 10189712 10189849 -272003815 + AluSx SINE Alu 1 139 -173 2270 102 7 0 chr1 10189849 10190144 -272003520 + AluY SINE Alu 1 297 -14 2425 88 0 16 chr1 10190144 10190323 -272003341 + AluSx SINE Alu 139 312 0 1429 279 59 36 chr1 10190366 10190889 -272002775 + ERVL LTR ERVL 4745 5279 -485 1945 131 3 7 chr1 10191294 10191608 -272002056 - AluSx SINE Alu 0 313 1 1657 161 16 48 chr1 10191744 10192055 -272001609 - AluJo SINE Alu -11 301 1 2190 112 3 0 chr1 10192495 10192790 -272000874 - AluSg SINE Alu -14 296 1 1088 90 0 0 chr1 10192790 10192923 -272000741 - AluSg SINE Alu -177 133 1 781 154 32 0 chr1 10193304 10193427 -272000237 - AluSx SINE Alu -22 290 164 494 141 0 0 chr1 10193425 10193496 -272000168 - AluSx SINE Alu -240 72 2 * 216 288 14 14 chr1 10193720 10193793 -271999871 - MIR SINE MIR -65 143 71 1786 176 3 16 chr1 10193807 10194119 -271999545 - AluJo SINE Alu -2 310 3 1008 114 0 0 chr1 10194124 10194256 -271999408 - FLAM_C SINE Alu -11 132 1 464 280 186 10 chr1 10194425 10194618 -271999046 - MIR SINE MIR 0 262 36 721 242 171 47 chr1 10194956 10195365 -271998299 + L2 LINE L2 2854 3313 0 2037 110 20 37 chr1 10195740 10195912 -271997752 - AluSc SINE Alu -14 295 129 1907 81 16 12 chr1 10195912 10196170 -271997494 - AluSq SINE Alu -10 303 45 2037 110 20 37 chr1 10196170 10196297 -271997367 - AluSc SINE Alu -180 129 1 2227 99 0 26 chr1 10196388 10196690 -271996974 - AluSx SINE Alu -18 294 1 2243 83 0 23 chr1 10197504 10197804 -271995860 + AluSx SINE Alu 1 293 -19 751 184 8 0 chr1 10197953 10198078 -271995586 + FAM SINE Alu 41 166 -19 21 36 0 0 chr1 10198078 10198106 -271995558 + AT_rich Low_complexity Low_complexity 1 28 0 2399 81 3 3 chr1 10198115 10198423 -271995241 + AluY SINE Alu 1 308 -3 1106 264 84 39 chr1 10198503 10199089 -271994575 - L1M4 LINE L1 -1218 4928 4317 2258 109 3 0 chr1 10199150 10199443 -271994221 - AluSx SINE Alu -18 294 1 2013 113 7 4 chr1 10200840 10201114 -271992550 - AluSx SINE Alu -24 288 14 2176 119 13 13 chr1 10201132 10201443 -271992221 - AluSx SINE Alu -1 311 1 24 53 0 0 chr1 10201550 10201588 -271992076 + AT_rich Low_complexity Low_complexity 1 38 0 2038 105 0 90 chr1 10202409 10202501 -271991163 + AluSx SINE Alu 1 100 -212 2382 91 3 3 chr1 10202501 10202810 -271990854 + AluSc SINE Alu 1 309 0 2038 105 0 90 chr1 10202810 10202879 -271990785 + AluSx SINE Alu 100 174 -138 2412 87 3 0 chr1 10202879 10203177 -271990487 + AluSp SINE Alu 2 300 -13 2038 105 0 90 chr1 10203177 10203348 -271990316 + AluSx SINE Alu 174 304 -8 398 242 60 65 chr1 10203549 10203764 -271989900 + MIR SINE MIR 48 261 -1 314 239 56 0 chr1 10203821 10203892 -271989772 + MIR SINE MIR 14 88 -174 * 599 237 46 8 chr1 10203871 10204002 -271989662 + L2 LINE L2 3137 3272 0 244 304 63 0 chr1 10204821 10204900 -271988764 + MIR SINE MIR 32 115 -93 1913 164 0 0 chr1 10205239 10205538 -271988126 + AluSx SINE Alu 1 299 -13 2141 150 3 31 chr1 10205687 10206041 -271987623 + MER7A DNA MER2_type 5 346 0 456 133 0 0 chr1 10206111 10206171 -271987493 + AluS SINE Alu 2 61 -257 1008 118 0 7 chr1 10206274 10206418 -271987246 + AluSg/x SINE Alu 129 271 -41 788 116 124 8 chr1 10206429 10206550 -271987114 + FLAM_C SINE Alu 2 136 -7 2078 138 0 0 chr1 10206842 10207133 -271986531 - AluSx SINE Alu -21 291 1 2518 81 0 3 chr1 10207620 10207930 -271985734 - AluSc SINE Alu 0 309 1 2659 134 57 2 chr1 10208300 10208704 -271984960 + MSTB LTR MaLR 1 426 0 437 252 63 25 chr1 10208771 10208930 -271984734 + HsTC2 DNA Tc2 729 893 -1005 1860 118 0 0 chr1 10209049 10209326 -271984338 + AluSx SINE Alu 35 312 0 1913 138 3 3 chr1 10209736 10210018 -271983646 - AluSx SINE Alu -8 304 23 1004 148 206 18 chr1 10210820 10211043 -271982621 + L1MD3 LINE L1 7730 7994 -1 434 250 60 9 chr1 10211749 10211865 -271981799 - L2 LINE L2 -3 3310 3189 1981 98 0 85 chr1 10212196 10212330 -271981334 + AluSc SINE Alu 1 145 -182 2349 95 10 0 chr1 10212330 10212634 -271981030 + AluSc SINE Alu 1 307 -2 1981 98 0 85 chr1 10212634 10212852 -271980812 + AluSc SINE Alu 145 327 0 2310 99 6 6 chr1 10213541 10213853 -271979811 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 10214498 10214524 -271979140 + (CA)n Simple_repeat Simple_repeat 2 27 0 2454 68 3 13 chr1 10214694 10215003 -271978661 + AluY SINE Alu 1 306 -5 2251 102 3 0 chr1 10215649 10215943 -271977721 + AluSp SINE Alu 1 295 -18 430 270 17 73 chr1 10216012 10216190 -271977474 + FAM SINE Alu 1 168 -17 304 280 126 40 chr1 10216842 10217017 -271976647 - L2 LINE L2 -297 3016 2827 259 179 39 26 chr1 10217022 10217100 -271976564 + (TG)n Simple_repeat Simple_repeat 1 79 0 385 203 0 13 chr1 10217102 10217181 -271976483 - L2 LINE L2 -504 2810 2733 441 0 0 0 chr1 10217201 10217250 -271976414 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 104 21 0 chr1 10217251 10217299 -271976365 + (GA)n Simple_repeat Simple_repeat 2 50 0 802 221 7 0 chr1 10217299 10217444 -271976220 - FRAM SINE Alu -30 146 1 792 92 151 0 chr1 10217774 10217893 -271975771 - L1PA14 LINE L1 -1 6160 6024 646 98 0 0 chr1 10218297 10218379 -271975285 + AluSx SINE Alu 2 83 -229 2025 104 0 0 chr1 10218379 10218638 -271975026 + AluSx SINE Alu 36 294 -18 185 308 55 22 chr1 10219102 10219193 -271974471 + MIR SINE MIR 159 252 -10 219 69 0 0 chr1 10220119 10220148 -271973516 + (CA)n Simple_repeat Simple_repeat 1 29 0 2359 112 0 0 chr1 10220417 10220730 -271972934 + AluSq SINE Alu 1 313 0 312 178 0 0 chr1 10220946 10221019 -271972645 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1265 131 63 0 chr1 10221253 10221444 -271972220 + AluSx SINE Alu 93 295 -17 305 271 16 49 chr1 10221475 10221506 -271972158 + L1MC4 LINE L1 7924 7954 -88 2393 84 0 3 chr1 10221506 10221804 -271971860 + AluY SINE Alu 1 297 -14 305 271 16 49 chr1 10221804 10221894 -271971770 + L1MC4 LINE L1 7954 8041 -1 181 254 18 36 chr1 10221969 10222024 -271971640 - L2 LINE L2 -71 3201 3148 2198 120 0 16 chr1 10222245 10222562 -271971102 + AluSx SINE Alu 1 312 0 914 43 58 0 chr1 10273304 10273442 -271920222 - MER30 DNA MER1_type -80 150 5 363 248 0 117 chr1 10273616 10273753 -271919911 + L1MCa LINE L1 1996 2116 -4310 236 266 115 35 chr1 10273902 10273927 -271919737 - L2 LINE L2 -154 3118 3096 1795 134 0 0 chr1 10273927 10274181 -271919483 + AluSx SINE Alu 1 254 -58 236 266 115 35 chr1 10274181 10274268 -271919396 - L2 LINE L2 -176 3096 2997 764 248 6 81 chr1 10275697 10275963 -271917701 - MIR SINE MIR 0 262 17 222 261 43 0 chr1 10276039 10276108 -271917556 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 10276114 10276167 -271917497 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 222 240 40 40 chr1 10276172 10276247 -271917417 + MIR SINE MIR 74 148 -114 2191 110 3 0 chr1 10276249 10276549 -271917115 + AluSx SINE Alu 2 302 -10 2315 81 7 3 chr1 10276597 10276904 -271916760 + AluSx SINE Alu 4 311 -1 273 221 0 186 chr1 10276904 10277103 -271916561 - Charlie5 DNA MER1_type -62 2550 2389 230 217 22 0 chr1 10277868 10277914 -271915750 - L2 LINE L2 -15 3298 3252 2259 105 3 0 chr1 10277975 10278279 -271915385 + AluSx SINE Alu 1 305 -7 188 250 0 0 chr1 10278281 10278321 -271915343 + L2 LINE L2 3214 3253 -19 574 271 21 7 chr1 10279171 10279315 -271914349 - MIR3 SINE MIR -62 146 1 187 355 66 0 chr1 10279461 10279537 -271914127 + MIR3 SINE MIR 74 154 -54 242 287 0 11 chr1 10279691 10279785 -271913879 - MER113 DNA MER1_type? -394 127 35 288 209 25 106 chr1 10280641 10280817 -271912847 + MIR SINE MIR 11 250 -12 365 300 60 27 chr1 10280961 10281111 -271912553 + MIR3 SINE MIR 40 194 -14 341 287 117 21 chr1 10282565 10282764 -271910900 + MIR3 SINE MIR 5 215 -47 594 202 30 98 chr1 10282848 10283051 -271910613 - MER5A DNA MER1_type 0 189 1 328 325 28 0 chr1 10283408 10283523 -271910141 - MIR3 SINE MIR -39 169 51 1854 120 56 0 chr1 10283617 10283913 -271909751 + AluSx SINE Alu 1 311 0 188 289 145 12 chr1 10284472 10284555 -271909109 - MIR SINE MIR -93 115 22 1796 102 0 0 chr1 10284890 10285147 -271908517 + AluSg SINE Alu 48 304 0 300 290 243 22 chr1 10285277 10285824 -271907840 + L2 LINE L2 2643 3306 -7 645 267 42 42 chr1 10286953 10287193 -271906471 - MIR SINE MIR -19 243 4 2096 129 3 0 chr1 10288873 10289175 -271904489 + AluSx SINE Alu 1 303 -9 196 321 49 12 chr1 10289790 10289871 -271903793 - MIR SINE MIR -77 185 102 2144 117 7 7 chr1 10289958 10290265 -271903399 - AluSx SINE Alu -5 307 1 633 266 59 20 chr1 10290463 10290666 -271902998 - MER20 DNA MER1_type -8 211 1 371 329 99 0 chr1 10290672 10290889 -271902775 + Charlie8 DNA MER1_type 4 228 -2189 1713 167 3 48 chr1 10291082 10291213 -271902451 + AluJo SINE Alu 1 136 -176 1930 120 67 0 chr1 10291213 10291497 -271902167 + AluSq SINE Alu 1 303 -10 1713 167 3 48 chr1 10291497 10291677 -271901987 + AluJo SINE Alu 136 298 -14 251 222 0 0 chr1 10291677 10291722 -271901942 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 205 327 34 93 chr1 10291965 10292170 -271901494 - L2 LINE L2 -4 3268 3076 1796 135 66 0 chr1 10292454 10292743 -271900921 - AluSx SINE Alu -4 308 1 304 329 64 43 chr1 10292745 10292885 -271900779 + L2 LINE L2 3125 3267 -5 428 247 123 26 chr1 10293523 10293677 -271899987 - MIR SINE MIR -21 241 73 2430 71 3 0 chr1 10294105 10294414 -271899250 + AluY SINE Alu 1 310 -1 1181 183 190 15 chr1 10294562 10294825 -271898839 - AluJb SINE Alu -3 309 1 2364 90 0 3 chr1 10295493 10295803 -271897861 + AluSq SINE Alu 1 309 -4 2480 49 0 7 chr1 10296404 10296709 -271896955 - AluY SINE Alu -8 303 1 352 331 47 0 chr1 10298272 10298399 -271895265 - L3 LINE CR1 -11 1566 1434 448 214 10 0 chr1 10299080 10299178 -271894486 + MER81 DNA DNA 1 99 -15 190 278 113 31 chr1 10299404 10299501 -271894163 - MIR3 SINE MIR -5 203 99 1947 115 3 72 chr1 10299958 10300283 -271893381 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 10301134 10301156 -271892508 + GC_rich Low_complexity Low_complexity 1 22 0 308 293 13 0 chr1 10301438 10301513 -271892151 + L2 LINE L2 3186 3261 -11 1662 134 69 79 chr1 10301514 10301819 -271891845 + AluSx SINE Alu 1 302 -10 255 226 32 0 chr1 10301867 10301929 -271891735 + CT-rich Low_complexity Low_complexity 2 65 0 379 287 87 7 chr1 10301954 10302016 -271891648 + Charlie8 DNA MER1_type 21 77 -264 2325 106 0 3 chr1 10302016 10302318 -271891346 + AluSx SINE Alu 1 301 -11 379 287 87 7 chr1 10302318 10302405 -271891259 + Charlie8 DNA MER1_type 77 182 -159 698 270 74 5 chr1 10302496 10302685 -271890979 + MIR SINE MIR 51 252 -10 1527 165 0 0 chr1 10302690 10302920 -271890744 + AluJo SINE Alu 1 230 -82 2225 107 0 0 chr1 10302959 10303273 -271890391 + AluSx SINE Alu 1 314 0 2214 119 0 0 chr1 10304489 10304783 -271888881 - AluSx SINE Alu -18 294 1 313 272 119 0 chr1 10304807 10304891 -271888773 - MIR SINE MIR -63 145 55 870 144 0 8 chr1 10305299 10305431 -271888233 + AluJb SINE Alu 6 136 -176 1573 137 144 4 chr1 10305432 10305695 -271887969 + AluSx SINE Alu 3 302 0 335 292 186 40 chr1 10305808 10306034 -271887630 - L2 LINE L2 0 3272 3014 191 83 0 0 chr1 10306057 10306081 -271887583 + L2 LINE L2 3199 3222 -91 523 280 151 5 chr1 10306499 10306717 -271886947 + L2 LINE L2 2500 2749 -565 1962 152 7 0 chr1 10306719 10307015 -271886649 + AluSx SINE Alu 1 298 -14 1750 225 62 18 chr1 10307192 10307687 -271885977 + L2 LINE L2 2787 3307 -6 2269 113 3 6 chr1 10307687 10307998 -271885666 + AluSq SINE Alu 1 310 -3 1106 143 6 6 chr1 10307998 10308173 -271885491 + AluSq SINE Alu 126 300 -13 226 237 151 11 chr1 10308203 10308296 -271885368 + L1ME4a LINE L1 6005 6110 -11 602 295 133 26 chr1 10309584 10309930 -271883734 - L2 LINE L2 0 3313 2931 535 106 11 11 chr1 10310091 10310185 -271883479 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 2315 86 7 3 chr1 10310343 10310633 -271883031 + AluSx SINE Alu 1 291 -21 565 123 40 0 chr1 10310672 10310773 -271882891 - MER5A DNA MER1_type -80 102 4 1485 176 26 40 chr1 10310861 10311163 -271882501 + AluJo SINE Alu 2 299 -13 520 212 33 46 chr1 10311276 10311427 -271882237 + L2 LINE L2 2632 2780 -534 721 236 16 147 chr1 10311438 10311861 -271881803 + L2 LINE L2 2888 3255 -17 355 260 24 79 chr1 10311946 10312073 -271881591 + L2 LINE L2 3141 3260 -12 361 304 84 9 chr1 10312467 10312602 -271881062 + MIR SINE MIR 21 163 -45 1706 220 31 96 chr1 10312651 10312706 -271880958 + MER77 LTR ERV1 84 141 -464 938 99 0 57 chr1 10312706 10312847 -271880817 + FLAM_C SINE Alu 1 133 0 1706 220 31 96 chr1 10312847 10312992 -271880672 + MER77 LTR ERV1 141 294 -311 2260 118 3 0 chr1 10312992 10313297 -271880367 + AluSx SINE Alu 1 306 -6 1706 220 31 96 chr1 10313297 10313488 -271880176 + MER77 LTR ERV1 294 432 -173 6501 117 144 24 chr1 10313488 10314629 -271879035 + MER52C LTR ERV1 1 1278 0 1706 220 31 96 chr1 10314629 10314789 -271878875 + MER77 LTR ERV1 432 601 -4 232 276 29 48 chr1 10314845 10314890 -271878774 + MIR SINE MIR 146 190 -72 2068 137 0 37 chr1 10314890 10315026 -271878638 + AluSx SINE Alu 1 141 -171 2399 88 3 3 chr1 10315026 10315332 -271878332 + AluSg SINE Alu 1 306 -4 2068 137 0 37 chr1 10315332 10315516 -271878148 + AluSx SINE Alu 141 309 -3 232 276 29 48 chr1 10315516 10315575 -271878089 + MIR SINE MIR 190 248 -14 417 241 292 15 chr1 10315610 10315805 -271877859 + MIR SINE MIR 14 262 0 2272 76 0 54 chr1 10316234 10316550 -271877114 - AluSg1 SINE Alu -10 299 1 1807 149 0 14 chr1 10316774 10317055 -271876609 + AluJb SINE Alu 1 277 -35 278 105 0 0 chr1 10317055 10317093 -271876571 - Alu SINE Alu -262 38 1 2117 94 4 0 chr1 10317117 10317406 -271876258 + AluSx SINE Alu 16 305 0 1368 208 83 0 chr1 10317409 10317736 -271875928 - LTR37A LTR ERV1 -55 371 18 2055 133 3 10 chr1 10317789 10318090 -271875574 + AluSq SINE Alu 2 300 -13 511 14 0 56 chr1 10318094 10318165 -271875499 - AluJb SINE Alu -161 151 85 1989 159 0 3 chr1 10318301 10318596 -271875068 + AluJo SINE Alu 2 295 -17 360 281 84 94 chr1 10318615 10318865 -271874799 - L2 LINE L2 -338 2976 2728 2131 123 0 13 chr1 10318865 10319165 -271874499 - AluSx SINE Alu -14 298 3 360 281 84 94 chr1 10319165 10319234 -271874430 - L2 LINE L2 -586 2728 2660 776 271 95 7 chr1 10319329 10319635 -271874029 + L1ME3A LINE L1 5498 5830 -340 2301 109 3 0 chr1 10319639 10319941 -271873723 + AluSq SINE Alu 1 303 -10 1788 178 3 10 chr1 10321040 10321332 -271872332 + AluJo SINE Alu 1 290 -22 231 88 0 0 chr1 10321333 10321367 -271872297 + (GA)n Simple_repeat Simple_repeat 1 34 0 375 92 13 40 chr1 10321368 10321444 -271872220 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1964 168 0 0 chr1 10322336 10322633 -271871031 + AluJo SINE Alu 1 297 -15 2137 137 3 3 chr1 10322635 10322948 -271870716 + AluSq SINE Alu 1 313 0 1043 114 0 0 chr1 10322962 10323093 -271870571 + AluSg SINE Alu 1 131 -179 1766 179 7 16 chr1 10323470 10323777 -271869887 + AluJo SINE Alu 1 304 -8 594 0 0 0 chr1 10323777 10323843 -271869821 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 207 69 0 0 chr1 10323842 10323871 -271869793 + (CAAGC)n Simple_repeat Simple_repeat 2 30 0 * 1929 130 0 7 chr1 10323875 10324144 -271869520 + AluSx SINE Alu 13 279 -33 186 43 0 0 chr1 10324144 10324167 -271869497 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 389 309 40 34 chr1 10324248 10324397 -271869267 - MIR SINE MIR -74 188 39 328 303 11 68 chr1 10324542 10324718 -271868946 + L1ME LINE L1 5350 5515 -655 211 270 180 34 chr1 10324804 10324893 -271868771 + MIR SINE MIR 123 224 -38 275 167 154 26 chr1 10324925 10325003 -271868661 + L2 LINE L2 3188 3275 -38 1914 118 0 18 chr1 10325133 10325237 -271868427 + AluSx SINE Alu 33 137 -175 2280 101 0 7 chr1 10325237 10325543 -271868121 + AluSx SINE Alu 1 304 -8 1914 118 0 18 chr1 10325543 10325710 -271867954 + AluSx SINE Alu 137 299 -13 1836 139 0 94 chr1 10325712 10326051 -271867613 + AluJb SINE Alu 1 307 -5 1963 112 23 3 chr1 10326077 10326380 -271867284 - AluSg SINE Alu -1 309 1 240 91 0 0 chr1 10326380 10326413 -271867251 - MER58 DNA MER1_type -32 2388 2356 288 221 104 0 chr1 10326425 10326502 -271867162 - MER58 DNA MER1_type -110 231 147 1788 169 27 3 chr1 10326504 10326799 -271866865 - AluSg SINE Alu -8 302 1 651 234 50 0 chr1 10326820 10326961 -271866703 - AluJb SINE Alu -23 289 142 639 85 47 0 chr1 10327061 10327167 -271866497 + Tigger7 DNA MER2_type 412 522 -1965 465 182 0 82 chr1 10327149 10327259 -271866405 + Tigger7 DNA MER2_type 2391 2491 0 * 27 29 0 0 chr1 10327295 10327329 -271866335 + AT_rich Low_complexity Low_complexity 1 34 0 1425 120 37 14 chr1 10327686 10327783 -271865881 - AluJo SINE Alu -91 221 128 297 0 0 0 chr1 10327783 10327816 -271865848 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1425 120 37 14 chr1 10327816 10327934 -271865730 - AluJo SINE Alu -184 128 1 317 255 142 7 chr1 10327934 10328075 -271865589 - L1ME LINE L1 -429 5692 5533 303 321 42 1 chr1 10328240 10328388 -271865276 + MIR SINE MIR 12 165 -60 199 247 112 11 chr1 10328497 10328586 -271865078 + MIR SINE MIR 165 262 0 367 240 10 30 chr1 10328591 10328691 -271864973 + L1ME4a LINE L1 6014 6111 -10 378 0 0 0 chr1 10329857 10329899 -271863765 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 268 0 18 chr1 10330127 10330183 -271863481 + MIR SINE MIR 93 147 -61 287 234 71 64 chr1 10334803 10334944 -271858720 + MIR3 SINE MIR 22 163 -45 2388 78 0 3 chr1 10338360 10338655 -271855009 + AluSq SINE Alu 1 294 -19 2357 110 0 3 chr1 10338657 10338966 -271854698 + AluSx SINE Alu 1 308 -4 861 89 32 8 chr1 10339074 10339198 -271854466 + AluYb8 SINE Alu 1 127 -191 2487 92 0 0 chr1 10339202 10339507 -271854157 + AluSq SINE Alu 1 305 -8 250 279 195 68 chr1 10342244 10342576 -271851088 - L2 LINE L2 -1 3271 2882 1490 169 50 29 chr1 10342576 10342855 -271850809 + AluJo SINE Alu 20 304 -8 250 279 195 68 chr1 10342855 10342906 -271850758 - L2 LINE L2 -390 2882 2839 232 311 52 44 chr1 10343194 10343329 -271850335 + L2 LINE L2 3031 3166 -106 185 315 54 71 chr1 10343688 10343872 -271849792 - L2 LINE L2 -219 3053 2873 931 262 98 27 chr1 10344293 10344701 -271848963 - MLT1J LTR MaLR 0 511 75 3499 204 44 40 chr1 10345080 10346207 -271847457 - L1ME2 LINE L1 0 6164 5039 1322 149 0 0 chr1 10346208 10346403 -271847261 - AluJb SINE Alu -30 282 88 757 241 27 45 chr1 10346421 10346602 -271847062 - L1ME2 LINE L1 -1113 5033 4855 2465 94 0 0 chr1 10346602 10346909 -271846755 + AluSq SINE Alu 1 307 -6 757 241 27 45 chr1 10346909 10346947 -271846717 - L1ME2 LINE L1 -1291 4855 4818 25 0 0 0 chr1 10346950 10346975 -271846689 + AT_rich Low_complexity Low_complexity 1 25 0 2516 214 22 5 chr1 10346981 10347536 -271846128 - L1MB8 LINE L1 -14 6164 5601 1151 196 20 87 chr1 10347571 10347828 -271845836 - L1ME1 LINE L1 -3 6443 6215 2326 110 0 0 chr1 10347828 10348136 -271845528 + AluSx SINE Alu 4 311 -1 1151 196 20 87 chr1 10348136 10348236 -271845428 - L1ME1 LINE L1 -231 6215 6110 328 235 0 82 chr1 10348236 10348334 -271845330 - L1MC4 LINE L1 -1339 6703 6614 385 240 39 10 chr1 10348393 10348497 -271845167 - L1ME1 LINE L1 -1024 5402 5296 317 214 0 58 chr1 10348527 10348634 -271845030 - L1MC4 LINE L1 -1339 6983 1996 2328 80 3 38 chr1 10348694 10349007 -271844657 - AluSp SINE Alu -3 310 9 226 167 143 60 chr1 10349010 10349094 -271844570 - MER58C DNA MER1_type -13 202 112 199 200 15 15 chr1 10349081 10349146 -271844518 + CT-rich Low_complexity Low_complexity 3 67 0 * 249 234 47 103 chr1 10349161 10349187 -271844477 - MER58C DNA MER1_type -114 101 75 1949 107 9 79 chr1 10349187 10349505 -271844159 + AluSx SINE Alu 1 296 -16 249 234 47 103 chr1 10349505 10349585 -271844079 - MER58C DNA MER1_type -140 75 1 2386 193 37 19 chr1 10349592 10350544 -271843120 - L1ME LINE L1 -378 5786 4817 605 323 156 20 chr1 10353517 10354016 -271839648 + L1MC/D LINE L1 5254 5820 -1988 1656 150 66 0 chr1 10355057 10355344 -271838320 + 7SLRNA srpRNA srpRNA 1 306 -14 604 256 180 14 chr1 10356977 10357188 -271836476 + MIR SINE MIR 1 246 -16 2190 100 7 0 chr1 10357537 10357836 -271835828 - AluSx SINE Alu -11 301 1 2241 88 0 31 chr1 10358045 10358364 -271835300 + AluY SINE Alu 1 309 -2 1559 168 27 30 chr1 10358391 10358513 -271835151 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr1 10358513 10358554 -271835110 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1559 168 27 30 chr1 10358554 10358728 -271834936 + AluJb SINE Alu 124 298 -14 2053 116 0 49 chr1 10358728 10359055 -271834609 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 10359406 10359428 -271834236 + AT_rich Low_complexity Low_complexity 1 22 0 2285 105 0 0 chr1 10359561 10359866 -271833798 - AluSg SINE Alu -5 305 1 181 174 87 120 chr1 10362151 10362243 -271831421 - MIR3 SINE MIR -16 192 104 643 208 8 0 chr1 10363250 10363370 -271830294 + MIR SINE MIR 56 176 -86 363 270 166 61 chr1 10365139 10365302 -271828362 - L1MC5 LINE L1 -164 7797 7618 439 180 33 107 chr1 10366103 10366145 -271827519 - MER81 DNA DNA 0 114 70 2223 98 10 0 chr1 10366145 10366452 -271827212 - AluSx SINE Alu 0 312 3 439 180 33 107 chr1 10366452 10366531 -271827133 - MER81 DNA DNA -44 70 2 240 149 0 0 chr1 10368020 10368067 -271825597 + (GGA)n Simple_repeat Simple_repeat 2 48 0 282 29 0 0 chr1 10368405 10368440 -271825224 + (CCCCAG)n Simple_repeat Simple_repeat 3 37 0 26 64 0 0 chr1 10374877 10374924 -271818740 + AT_rich Low_complexity Low_complexity 1 47 0 390 288 47 26 chr1 10375048 10375235 -271818429 - L1MC4 LINE L1 -1339 6983 1927 21 57 0 0 chr1 10376840 10376875 -271816789 + GC_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr1 10377121 10377142 -271816522 + (CGG)n Simple_repeat Simple_repeat 3 23 0 39 74 0 0 chr1 10377146 10377227 -271816437 + GC_rich Low_complexity Low_complexity 1 81 0 240 35 0 0 chr1 10380190 10380219 -271813445 + (GGA)n Simple_repeat Simple_repeat 3 31 0 272 257 0 0 chr1 10380241 10380315 -271813349 + A-rich Low_complexity Low_complexity 1 74 0 218 273 15 0 chr1 10382335 10382401 -271811263 + L2 LINE L2 3247 3313 0 2402 42 7 0 chr1 10383154 10383441 -271810223 + AluY SINE Alu 1 289 -22 204 214 0 0 chr1 10384997 10385039 -271808625 + G-rich Low_complexity Low_complexity 3 44 0 231 36 0 0 chr1 10387769 10387797 -271805867 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 206 234 0 62 chr1 10387861 10387925 -271805739 + G-rich Low_complexity Low_complexity 5 64 0 37 0 0 0 chr1 10388269 10388306 -271805358 + AT_rich Low_complexity Low_complexity 1 37 0 200 98 0 24 chr1 10389219 10389260 -271804404 + (CGGGGG)n Simple_repeat Simple_repeat 4 43 0 290 311 66 0 chr1 10390243 10390365 -271803299 + L2 LINE L2 3143 3272 0 253 323 40 0 chr1 10390656 10390780 -271802884 - MER3 DNA MER1_type -70 139 11 357 376 44 6 chr1 10394127 10394308 -271799356 + MIR SINE MIR 61 248 -14 276 30 0 0 chr1 10394684 10394717 -271798947 + (CCCCAG)n Simple_repeat Simple_repeat 4 36 0 212 356 0 0 chr1 10395513 10395631 -271798033 + GA-rich Low_complexity Low_complexity 2 119 0 921 126 0 15 chr1 10395903 10396038 -271797626 - FLAM_C SINE Alu 0 133 1 21 57 0 0 chr1 10398606 10398641 -271795023 + AT_rich Low_complexity Low_complexity 1 35 0 349 237 12 0 chr1 10399274 10399443 -271794221 + (CA)n Simple_repeat Simple_repeat 2 172 0 256 230 22 11 chr1 10399459 10399637 -271794027 + (CA)n Simple_repeat Simple_repeat 1 180 0 509 272 17 0 chr1 10399664 10399837 -271793827 + (CA)n Simple_repeat Simple_repeat 1 176 0 184 249 23 6 chr1 10399903 10400080 -271793584 + (CA)n Simple_repeat Simple_repeat 1 180 0 181 241 15 0 chr1 10400134 10400267 -271793397 + (CA)n Simple_repeat Simple_repeat 2 136 0 203 249 11 11 chr1 10400343 10400520 -271793144 + (CA)n Simple_repeat Simple_repeat 2 178 0 223 141 31 0 chr1 10400593 10400657 -271793007 + (CA)n Simple_repeat Simple_repeat 2 67 0 180 0 0 0 chr1 10401870 10401890 -271791774 + (TCTCC)n Simple_repeat Simple_repeat 4 23 0 233 231 0 19 chr1 10402662 10402714 -271790950 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 10402714 10402734 -271790930 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 396 319 139 28 chr1 10403535 10403751 -271789913 + L2 LINE L2 3033 3272 0 250 264 88 48 chr1 10403833 10403958 -271789706 - MIR SINE MIR -119 143 14 210 143 0 0 chr1 10404690 10404725 -271788939 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 314 12 0 chr1 10404759 10404845 -271788819 - L2 LINE L2 -19 3294 3208 201 333 106 24 chr1 10407043 10407166 -271786498 - MIR SINE MIR -81 181 49 211 208 19 0 chr1 10410355 10410408 -271783256 + (CCCG)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr1 10418797 10418822 -271774842 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2056 121 0 0 chr1 10418824 10419106 -271774558 - AluSx SINE Alu -30 282 1 227 286 218 42 chr1 10419298 10419606 -271774058 + L2 LINE L2 2908 3269 -3 367 177 188 10 chr1 10422482 10422578 -271771086 + MER81 DNA DNA 2 114 0 195 129 0 0 chr1 10426886 10426917 -271766747 + (GGA)n Simple_repeat Simple_repeat 2 32 0 263 308 111 17 chr1 10427750 10427867 -271765797 - L3 LINE CR1 -60 1517 1390 227 100 0 25 chr1 10428968 10429008 -271764656 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 234 0 0 0 chr1 10431403 10431429 -271762235 + (A)n Simple_repeat Simple_repeat 1 26 0 24 77 0 0 chr1 10431905 10431957 -271761707 + GC_rich Low_complexity Low_complexity 1 52 0 180 158 0 0 chr1 10432380 10432418 -271761246 + C-rich Low_complexity Low_complexity 1 38 0 672 119 0 0 chr1 10436781 10436899 -271756765 + (GA)n Simple_repeat Simple_repeat 2 119 0 333 0 0 0 chr1 10436899 10436936 -271756728 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 308 138 71 chr1 10437422 10437542 -271756122 + MIR SINE MIR 22 133 -129 1259 159 9 0 chr1 10437542 10437756 -271755908 + L1MB7 LINE L1 5969 6184 0 305 308 138 71 chr1 10437756 10437859 -271755805 + MIR SINE MIR 133 260 -2 294 73 0 0 chr1 10439764 10439805 -271753859 + (GA)n Simple_repeat Simple_repeat 1 41 0 204 291 182 27 chr1 10440303 10440413 -271753251 - MIR SINE MIR -79 183 57 871 198 0 55 chr1 10440533 10440735 -271752929 - MER58A DNA MER1_type 0 224 34 182 320 16 82 chr1 10444876 10444998 -271748666 - MIR3 SINE MIR -47 161 48 269 329 0 0 chr1 10445577 10445656 -271748008 + GA-rich Low_complexity Low_complexity 4 82 0 235 254 8 49 chr1 10445750 10445872 -271747792 + G-rich Low_complexity Low_complexity 2 118 0 342 156 0 0 chr1 10446409 10446473 -271747191 + GA-rich Low_complexity Low_complexity 2 65 0 213 314 71 0 chr1 10447590 10447660 -271746004 - L2 LINE L2 -10 3262 3188 2172 113 13 0 chr1 10447671 10447971 -271745693 + AluSx SINE Alu 1 304 -8 382 283 32 34 chr1 10447986 10448122 -271745542 + MIR SINE MIR 37 170 -61 285 254 127 36 chr1 10448125 10448235 -271745429 - L2 LINE L2 -5 3308 3189 260 246 0 0 chr1 10448256 10448313 -271745351 + MIR SINE MIR 206 262 0 2174 187 29 55 chr1 10448355 10448882 -271744782 + L1MB5 LINE L1 5626 6166 -17 2141 117 0 0 chr1 10448882 10449172 -271744492 + AluSq SINE Alu 1 290 -23 285 29 0 0 chr1 10449177 10449211 -271744453 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2174 187 29 55 chr1 10449211 10449262 -271744402 + L1MB5 LINE L1 6170 6183 0 192 97 0 0 chr1 10450109 10450140 -271743524 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2226 102 3 7 chr1 10450844 10451149 -271742515 + AluSx SINE Alu 2 305 -7 226 250 75 50 chr1 10451166 10451286 -271742378 - MIR SINE MIR -133 129 7 443 215 0 43 chr1 10452306 10452492 -271741172 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 276 275 0 33 chr1 10452508 10452690 -271740974 + (CACCC)n Simple_repeat Simple_repeat 1 176 0 424 235 0 39 chr1 10452769 10453134 -271740530 + (CACCC)n Simple_repeat Simple_repeat 1 350 0 195 42 0 0 chr1 10454200 10454224 -271739440 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 282 272 194 7 chr1 10454844 10454991 -271738673 - MIR SINE MIR -59 149 13 24 0 0 0 chr1 10455171 10455195 -271738469 + AT_rich Low_complexity Low_complexity 1 24 0 328 103 0 59 chr1 10455687 10455755 -271737909 - AluSq SINE Alu -1 301 238 1630 125 0 20 chr1 10455788 10456036 -271737628 - AluSq SINE Alu -70 243 1 448 374 27 0 chr1 10456894 10457081 -271736583 + MIR SINE MIR 40 231 -31 262 248 208 0 chr1 10462819 10462920 -271730744 - MIR SINE MIR 0 262 141 231 146 0 0 chr1 10462922 10462963 -271730701 + (CTA)n Simple_repeat Simple_repeat 3 43 0 322 312 39 19 chr1 10462975 10463129 -271730535 - MIR SINE MIR -2 260 104 33 0 0 0 chr1 10465405 10465438 -271728226 + AT_rich Low_complexity Low_complexity 1 33 0 194 133 0 44 chr1 10465905 10465950 -271727714 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 417 301 102 6 chr1 10466388 10466626 -271727038 + Charlie1a DNA MER1_type 2 268 -1187 2095 104 3 0 chr1 10466626 10466913 -271726751 - AluSx SINE Alu -4 308 21 988 129 0 0 chr1 10466922 10467084 -271726580 - AluSx SINE Alu 0 307 146 563 44 0 0 chr1 10467084 10467152 -271726512 - AluSx SINE Alu -245 68 1 3523 194 72 81 chr1 10467157 10467644 -271726020 + Charlie1a DNA MER1_type 264 754 -2007 2157 114 0 0 chr1 10467644 10467934 -271725730 + AluSg SINE Alu 1 290 -20 3523 194 72 81 chr1 10467934 10468119 -271725545 + Charlie1a DNA MER1_type 754 939 -1822 1870 163 3 6 chr1 10468119 10468432 -271725232 + AluJb SINE Alu 1 312 0 3523 194 72 81 chr1 10468432 10468861 -271724803 + Charlie1a DNA MER1_type 939 1357 -1404 2187 107 13 0 chr1 10468861 10469160 -271724504 + AluSx SINE Alu 1 303 -9 3523 194 72 81 chr1 10469160 10469259 -271724405 + Charlie1a DNA MER1_type 1357 1455 0 402 390 26 40 chr1 10470262 10470534 -271723130 - L2 LINE L2 -5 3267 3000 621 280 109 25 chr1 10470545 10470784 -271722880 + MIR SINE MIR 2 260 -2 228 135 0 0 chr1 10471475 10471512 -271722152 + (GA)n Simple_repeat Simple_repeat 2 38 0 251 325 42 17 chr1 10473234 10473354 -271720310 - MER5A DNA MER1_type -66 123 1 268 271 125 0 chr1 10473359 10473455 -271720209 - MIR SINE MIR -106 156 49 236 358 65 16 chr1 10473499 10473622 -271720042 - L2 LINE L2 -37 3235 3107 495 330 112 32 chr1 10474779 10475064 -271718600 - L2 LINE L2 -1 3312 3005 234 0 0 0 chr1 10475737 10475763 -271717901 + (T)n Simple_repeat Simple_repeat 1 26 0 426 342 38 8 chr1 10476888 10477084 -271716580 - MIR SINE MIR -35 227 25 189 279 44 15 chr1 10477181 10477249 -271716415 + MIR3 SINE MIR 114 183 -25 1870 152 0 29 chr1 10477489 10477805 -271715859 + AluJo SINE Alu 5 311 -1 1858 122 50 0 chr1 10477823 10478101 -271715563 - AluSx SINE Alu -20 292 1 206 121 0 0 chr1 10478599 10478632 -271715032 + (TA)n Simple_repeat Simple_repeat 1 33 0 2266 106 0 3 chr1 10479520 10479823 -271713841 + AluSx SINE Alu 1 302 -10 192 77 0 0 chr1 10480669 10480695 -271712969 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 982 204 11 0 chr1 10482306 10482482 -271711182 + MER45A DNA AcHobo 1 178 0 254 348 30 80 chr1 10482487 10482688 -271710976 + MIR SINE MIR 28 218 -44 180 286 48 16 chr1 10482860 10482923 -271710741 - MIR SINE MIR -117 145 81 2454 47 0 7 chr1 10484636 10484936 -271708728 - AluY SINE Alu -13 298 1 266 314 215 26 chr1 10485232 10485423 -271708241 - MIR SINE MIR -15 247 21 2217 92 0 7 chr1 10486072 10486365 -271707299 - AluSc SINE Alu -18 291 1 1415 157 79 59 chr1 10487081 10487386 -271706278 - AluJo SINE Alu -1 311 1 299 283 29 92 chr1 10487387 10487436 -271706228 + MIR SINE MIR 101 152 -110 2161 100 3 28 chr1 10487436 10487755 -271705909 + AluSx SINE Alu 1 311 -1 299 283 29 92 chr1 10487755 10487878 -271705786 + MIR SINE MIR 152 262 0 242 54 0 27 chr1 10487887 10487924 -271705740 + (TTA)n Simple_repeat Simple_repeat 2 37 0 896 164 10 70 chr1 10489510 10489572 -271704092 - MER53 DNA DNA 0 189 125 2127 101 0 3 chr1 10489572 10489882 -271703782 + AluSq SINE Alu 1 309 0 896 164 10 70 chr1 10489882 10490019 -271703645 - MER53 DNA DNA -64 125 1 762 252 118 50 chr1 10490672 10491233 -271702431 + L2 LINE L2 2710 3309 -4 715 310 139 20 chr1 10494087 10494324 -271699340 + L2 LINE L2 2439 2647 -666 2276 114 0 0 chr1 10494324 10494630 -271699034 + AluSx SINE Alu 1 306 -6 715 310 139 20 chr1 10494630 10495109 -271698555 + L2 LINE L2 2647 3243 -70 2392 100 0 0 chr1 10495139 10495450 -271698214 - AluSx SINE Alu -1 311 1 380 325 140 13 chr1 10497187 10497344 -271696320 - MIR3 SINE MIR -11 197 21 324 322 89 20 chr1 10500112 10500258 -271693406 + MIR3 SINE MIR 28 183 -25 406 338 51 19 chr1 10500443 10500600 -271693064 + L2 LINE L2 3106 3267 -5 2259 110 0 0 chr1 10500681 10500981 -271692683 - AluSx SINE Alu -12 300 1 203 343 14 14 chr1 10501129 10501199 -271692465 - L2 LINE L2 -9 3263 3194 462 364 66 0 chr1 10501259 10501457 -271692207 - MIR SINE MIR -24 238 28 216 0 0 0 chr1 10503023 10503047 -271690617 + (CA)n Simple_repeat Simple_repeat 1 24 0 982 247 18 5 chr1 10503074 10503293 -271690371 + MIR SINE MIR 2 223 -39 208 297 34 109 chr1 10503547 10503722 -271689942 - MIR SINE MIR -30 232 71 2093 116 0 0 chr1 10505018 10505336 -271688328 - AluSx SINE Alu 0 318 1 2277 96 3 0 chr1 10505677 10505979 -271687685 + AluSx SINE Alu 1 303 -9 580 191 17 0 chr1 10506101 10506216 -271687448 + MER3 DNA MER1_type 52 168 -41 2234 93 3 0 chr1 10506345 10506635 -271687029 - AluSx SINE Alu -21 291 1 528 302 61 14 chr1 10506637 10506849 -271686815 - MIR SINE MIR -6 256 35 1850 186 0 0 chr1 10506891 10507203 -271686461 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 10508132 10508154 -271685510 + AT_rich Low_complexity Low_complexity 1 22 0 348 24 0 0 chr1 10508476 10508517 -271685147 + (TCC)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr1 10509844 10509869 -271683795 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 431 249 13 24 chr1 10513871 10514031 -271679633 + MIR SINE MIR 48 203 -59 414 260 6 17 chr1 10514410 10514591 -271679073 + (CA)n Simple_repeat Simple_repeat 2 180 0 267 294 5 27 chr1 10514710 10514894 -271678770 + (CA)n Simple_repeat Simple_repeat 1 180 0 279 305 6 6 chr1 10515119 10515293 -271678371 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 0 0 0 chr1 10516098 10516120 -271677544 + (T)n Simple_repeat Simple_repeat 1 22 0 406 298 60 36 chr1 10517337 10517505 -271676159 + L1ME4a LINE L1 5893 6064 -57 445 329 119 9 chr1 10517540 10517759 -271675905 + MIR SINE MIR 9 251 -11 502 303 86 0 chr1 10518567 10518742 -271674922 - MIR SINE MIR -26 236 47 357 24 0 0 chr1 10520065 10520107 -271673557 + (TG)n Simple_repeat Simple_repeat 2 43 0 2327 89 3 0 chr1 10520409 10520712 -271672952 + AluSx SINE Alu 1 304 -8 267 341 108 28 chr1 10520738 10520952 -271672712 - MIR SINE MIR 0 262 32 566 246 149 0 chr1 10521152 10521327 -271672337 + MER3 DNA MER1_type 9 209 0 2049 118 0 7 chr1 10521373 10521684 -271671980 - AluSx SINE Alu 0 309 1 328 367 88 20 chr1 10521839 10522136 -271671528 - HAL1 LINE L1 -1182 1325 1009 228 331 149 1 chr1 10522710 10522878 -271670786 - MIR SINE MIR -54 154 3 496 265 88 7 chr1 10523378 10523514 -271670150 - MIR SINE MIR -37 225 79 448 276 26 2 chr1 10523897 10524079 -271669585 - MIR SINE MIR -50 212 28 192 214 0 0 chr1 10524451 10524507 -271669157 + (CA)n Simple_repeat Simple_repeat 2 57 0 351 96 0 0 chr1 10526343 10526395 -271667269 + (TC)n Simple_repeat Simple_repeat 1 52 0 290 87 22 0 chr1 10528542 10528588 -271665076 + (GA)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr1 10529133 10529159 -271664505 + (C)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 10529675 10529697 -271663967 + AT_rich Low_complexity Low_complexity 1 22 0 426 108 0 0 chr1 10530953 10531018 -271662646 + (TG)n Simple_repeat Simple_repeat 1 65 0 213 229 49 16 chr1 10531700 10531822 -271661842 + (CCCG)n Simple_repeat Simple_repeat 2 127 0 240 100 0 0 chr1 10533208 10533248 -271660416 + (CTCG)n Simple_repeat Simple_repeat 2 41 0 207 225 36 90 chr1 10534047 10534158 -271659506 - L2 LINE L2 -105 3208 3104 929 121 8 0 chr1 10534179 10534311 -271659353 + FLAM_C SINE Alu 1 133 0 310 257 14 0 chr1 10535409 10535483 -271658181 - MIR3 SINE MIR -37 171 97 758 246 62 7 chr1 10535553 10535768 -271657896 + MIR SINE MIR 36 261 -1 194 330 97 0 chr1 10535879 10535982 -271657682 - L2 LINE L2 0 3272 3160 677 283 148 30 chr1 10536542 10537014 -271656650 + L2 LINE L2 2760 3288 -25 261 337 71 0 chr1 10537443 10537541 -271656123 + L2 LINE L2 3167 3271 -1 553 241 68 19 chr1 10537659 10537821 -271655843 - MIR SINE MIR -3 259 90 2046 151 0 0 chr1 10538073 10538384 -271655280 + AluSx SINE Alu 1 311 -1 2274 94 0 0 chr1 10538673 10538971 -271654693 - AluSx SINE Alu -14 298 1 909 269 76 64 chr1 10539165 10539745 -271653919 - L1ME4a LINE L1 -1 6120 5534 201 184 0 0 chr1 10540433 10540471 -271653193 + MIR3 SINE MIR 160 197 -11 354 254 136 104 chr1 10541544 10541831 -271651833 + L2 LINE L2 2832 3127 -145 2461 80 0 0 chr1 10541899 10542210 -271651454 - AluSx SINE Alu -1 311 1 753 276 81 0 chr1 10542230 10542440 -271651224 + MIR SINE MIR 36 262 0 2283 78 3 0 chr1 10542904 10543198 -271650466 + AluSq SINE Alu 1 295 -18 292 254 41 107 chr1 10543301 10543423 -271650241 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 10543689 10543977 -271649687 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 10544015 10544187 -271649477 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 288 240 10 83 chr1 10544187 10544283 -271649381 - L2 LINE L2 0 3272 3184 415 315 0 15 chr1 10544374 10544504 -271649160 + MIR3 SINE MIR 31 158 -50 747 283 50 5 chr1 10545396 10545615 -271648049 + MIR SINE MIR 33 261 -1 218 333 39 0 chr1 10545633 10545711 -271647953 + MIR3 SINE MIR 106 186 -22 212 363 63 37 chr1 10546138 10546328 -271647336 - MIR SINE MIR -8 254 60 613 282 151 5 chr1 10547451 10547657 -271646007 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 10547917 10548056 -271645608 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 10548336 10548527 -271645137 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 10548624 10548798 -271644866 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 10548798 10548835 -271644829 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 10548835 10549124 -271644540 - AluSq SINE Alu -26 287 1 295 304 34 38 chr1 10549339 10549497 -271644167 - MIR3 SINE MIR -62 146 3 391 313 8 16 chr1 10550036 10550164 -271643500 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 10550155 10550242 -271643422 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 10550285 10550528 -271643136 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 10551277 10551372 -271642292 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 10551312 10551544 -271642120 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 10551625 10551731 -271641933 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 10552320 10552403 -271641261 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 10552932 10553092 -271640572 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 10553126 10553330 -271640334 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 10554006 10554231 -271639433 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 10554430 10554482 -271639182 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 10554598 10554711 -271638953 + L2 LINE L2 3141 3254 -18 657 96 0 0 chr1 10554743 10554837 -271638827 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2273 115 0 0 chr1 10554837 10555149 -271638515 - AluSx SINE Alu 0 312 1 679 279 90 21 chr1 10555896 10556129 -271637535 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 10556480 10556537 -271637127 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 10556823 10556928 -271636736 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 10557147 10557279 -271636385 - MIR3 SINE MIR -53 155 3 1945 152 7 3 chr1 10557672 10557981 -271635683 - AluSx SINE Alu -2 310 1 259 349 106 8 chr1 10558037 10558169 -271635495 - MIR SINE MIR -62 200 56 316 358 25 31 chr1 10558201 10558363 -271635301 + L2 LINE L2 2894 3054 -218 186 43 0 0 chr1 10558371 10558394 -271635270 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 214 9 0 chr1 10558395 10558507 -271635157 - L2 LINE L2 -14 3299 3187 2426 87 0 0 chr1 10558641 10558953 -271634711 - AluSx SINE Alu 0 312 1 1926 135 10 7 chr1 10558956 10559260 -271634404 - AluJb SINE Alu -7 305 1 579 269 16 42 chr1 10559508 10559701 -271633963 + MIR3 SINE MIR 15 202 -6 388 269 134 47 chr1 10560201 10560350 -271633314 - MIR SINE MIR 0 262 101 1919 140 24 3 chr1 10560415 10560707 -271632957 + AluSx SINE Alu 1 298 -14 318 354 0 0 chr1 10561445 10561541 -271632123 + L1M4 LINE L1 3074 3169 -2977 354 291 28 31 chr1 10562063 10562256 -271631408 + MIR SINE MIR 34 226 -36 611 269 76 6 chr1 10562263 10562434 -271631230 - MIR SINE MIR -1 261 79 2189 107 0 0 chr1 10563045 10563343 -271630321 + AluSx SINE Alu 1 298 -14 37 0 0 21 chr1 10563359 10563372 -271630292 + AT_rich Low_complexity Low_complexity 1 13 -34 2187 103 0 3 chr1 10563372 10563663 -271630001 - AluSg SINE Alu -20 290 1 37 0 0 21 chr1 10563663 10563697 -271629967 + AT_rich Low_complexity Low_complexity 13 47 0 516 278 14 28 chr1 10563866 10564010 -271629654 - MIR SINE MIR -113 149 8 255 236 0 0 chr1 10564127 10564182 -271629482 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 356 292 102 7 chr1 10564184 10564321 -271629343 - MIR SINE MIR -75 187 38 225 0 0 0 chr1 10565771 10565796 -271627868 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1624 158 0 45 chr1 10565855 10566165 -271627499 + AluJb SINE Alu 1 296 -16 356 365 105 30 chr1 10566407 10566607 -271627057 + L1MC4a LINE L1 5721 5935 -1873 533 281 95 50 chr1 10567526 10567768 -271625896 + MIR SINE MIR 8 260 -2 296 242 0 0 chr1 10568277 10568343 -271625321 - MIR SINE MIR -138 124 59 2187 125 0 0 chr1 10568878 10569190 -271624474 - AluSx SINE Alu 0 312 1 212 200 13 53 chr1 10569979 10570054 -271623610 + L2 LINE L2 2967 3038 -234 2011 155 0 0 chr1 10570201 10570505 -271623159 + AluJb SINE Alu 1 304 -8 400 274 132 57 chr1 10570505 10570717 -271622947 - L2 LINE L2 -1 3312 3085 1032 151 0 0 chr1 10570812 10570991 -271622673 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 1089 136 0 0 chr1 10570992 10571169 -271622495 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 285 98 0 0 chr1 10571170 10571211 -271622453 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 486 289 111 0 chr1 10572303 10572483 -271621181 - MIR SINE MIR 0 262 63 215 167 0 0 chr1 10573144 10573180 -271620484 + MIR SINE MIR 110 145 -63 479 297 180 28 chr1 10573182 10573332 -271620332 - L2 LINE L2 -5 3308 3182 2150 92 0 7 chr1 10573332 10573639 -271620025 + AluSx SINE Alu 1 305 0 479 297 180 28 chr1 10573639 10573810 -271619854 - L2 LINE L2 -131 3182 2937 255 170 21 0 chr1 10574133 10574180 -271619484 - MIR3 SINE MIR -52 156 109 949 188 0 0 chr1 10574490 10574676 -271618988 + FRAM SINE Alu 1 176 0 550 244 6 70 chr1 10574744 10574916 -271618748 + MIR SINE MIR 26 186 -76 343 336 52 0 chr1 10575020 10575136 -271618528 - MIR SINE MIR -124 138 17 222 336 8 0 chr1 10575981 10576103 -271617561 + (TG)n Simple_repeat Simple_repeat 1 123 0 2334 90 0 10 chr1 10577433 10577744 -271615920 + AluY SINE Alu 1 308 -3 463 247 11 144 chr1 10578496 10578767 -271614897 - MIR SINE MIR -9 253 19 1377 271 129 0 chr1 10578929 10578955 -271614709 + L2 LINE L2 2357 2378 -936 2233 95 3 0 chr1 10578955 10579251 -271614413 - AluSx SINE Alu -15 297 1 1377 271 129 0 chr1 10579251 10579737 -271613927 + L2 LINE L2 2378 2935 -379 317 280 32 96 chr1 10579864 10580032 -271613632 + L2 LINE L2 2945 3094 -219 1668 190 0 14 chr1 10580032 10580360 -271613304 - AluJo SINE Alu 0 326 3 317 280 32 96 chr1 10580360 10580440 -271613224 + L2 LINE L2 3094 3178 -135 1842 216 70 19 chr1 10580474 10581099 -271612565 - L1MEc LINE L1 -4948 1448 792 1697 188 3 0 chr1 10581116 10581403 -271612261 - AluJb SINE Alu -24 288 1 727 152 7 0 chr1 10581403 10581541 -271612123 - L1MC3 LINE L1 -6 7779 7641 621 132 0 99 chr1 10581541 10581662 -271612002 + FRAM SINE Alu 65 173 -3 643 218 58 0 chr1 10581668 10581824 -271611840 - L1MD3 LINE L1 -146 7849 7685 1085 148 94 20 chr1 10581824 10582027 -271611637 - AluJo SINE Alu -16 296 79 3427 215 89 30 chr1 10582027 10582649 -271611015 - L1MC3 LINE L1 -308 7477 6893 2028 152 7 0 chr1 10582649 10582959 -271610705 - AluJb SINE Alu 0 312 1 1450 167 101 17 chr1 10582965 10583253 -271610411 - AluJb SINE Alu 0 312 1 3427 215 89 30 chr1 10583253 10583633 -271610031 - L1MC3 LINE L1 -896 6889 6408 924 251 8 4 chr1 10583637 10583876 -271609788 - L1MEc LINE L1 -5608 788 549 771 245 60 78 chr1 10583884 10584093 -271609571 - L1MEc LINE L1 -5984 412 201 1922 95 71 10 chr1 10584093 10584387 -271609277 - AluJb SINE Alu 0 312 1 771 245 60 78 chr1 10584387 10584487 -271609177 - L1MEc LINE L1 -6195 201 109 752 208 0 0 chr1 10584487 10584612 -271609052 - FLAM_A SINE Alu -8 125 1 771 245 60 78 chr1 10584612 10584685 -271608979 - L1MEc LINE L1 -6287 109 36 308 292 34 11 chr1 10584685 10584774 -271608890 - L2 LINE L2 -43 3270 3180 1995 125 10 7 chr1 10584830 10585125 -271608539 + AluSx SINE Alu 1 296 -16 260 125 21 0 chr1 10585125 10585173 -271608491 - Cheshire DNA MER1_type -29 2391 2343 * 1648 198 55 0 chr1 10585170 10585498 -271608166 - Cheshire DNA MER1_type -2074 346 1 2046 150 0 3 chr1 10585545 10585858 -271607806 + AluSx SINE Alu 1 312 0 256 381 121 0 chr1 10585858 10586031 -271607633 - L2 LINE L2 -136 3177 2984 205 281 207 0 chr1 10586067 10586149 -271607515 + L2 LINE L2 3133 3231 -41 327 283 29 9 chr1 10586281 10586418 -271607246 + MIR SINE MIR 11 146 -62 339 297 94 90 chr1 10587045 10587301 -271606363 + L2 LINE L2 3015 3271 -1 248 288 34 103 chr1 10587311 10587457 -271606207 - MIR3 SINE MIR -38 170 35 187 217 0 0 chr1 10587465 10587512 -271606152 + MIR SINE MIR 102 148 -60 1985 118 7 0 chr1 10587727 10588006 -271605658 - AluSx SINE Alu -16 296 16 249 340 64 39 chr1 10589006 10589209 -271604455 - L2 LINE L2 -113 3159 2952 274 278 0 10 chr1 10589757 10589854 -271603810 + (CACCAT)n Simple_repeat Simple_repeat 6 101 0 309 200 0 59 chr1 10589874 10590009 -271603655 + (CACCAT)n Simple_repeat Simple_repeat 1 127 0 362 240 0 7 chr1 10590037 10590183 -271603481 + (CCA)n Simple_repeat Simple_repeat 1 145 0 594 236 0 21 chr1 10590231 10590518 -271603146 + (CACCAT)n Simple_repeat Simple_repeat 1 281 0 608 240 7 10 chr1 10590569 10590867 -271602797 + (CACCAT)n Simple_repeat Simple_repeat 1 297 0 2382 101 93 21 chr1 10590911 10591176 -271602488 + MER83 LTR ERV1 1 308 -140 2039 122 54 35 chr1 10591176 10591247 -271602417 - THE1C LTR MaLR 0 375 307 2296 107 0 0 chr1 10591247 10591556 -271602108 + AluY SINE Alu 2 310 -1 2039 122 54 35 chr1 10591556 10591852 -271601812 - THE1C LTR MaLR -68 307 1 2382 101 93 21 chr1 10591852 10592004 -271601660 + MER83 LTR ERV1 308 448 0 306 246 0 26 chr1 10592007 10592121 -271601543 + (CAT)n Simple_repeat Simple_repeat 2 112 0 617 296 182 0 chr1 10592279 10592647 -271601017 + L2 LINE L2 2838 3272 0 201 141 16 31 chr1 10594353 10594417 -271599247 + CT-rich Low_complexity Low_complexity 1 63 0 335 261 0 18 chr1 10594442 10594553 -271599111 + CT-rich Low_complexity Low_complexity 1 109 0 283 285 227 8 chr1 10595456 10595698 -271597966 - L2 LINE L2 0 3313 3019 502 259 16 86 chr1 10595820 10595943 -271597721 - MIR SINE MIR -6 256 126 2257 117 0 0 chr1 10595943 10596250 -271597414 + AluSx SINE Alu 3 309 -3 1615 181 10 10 chr1 10596255 10596553 -271597111 + AluJb SINE Alu 1 298 -14 502 259 16 86 chr1 10596553 10596698 -271596966 - MIR SINE MIR -140 122 5 301 374 94 24 chr1 10597488 10598082 -271595582 - L2 LINE L2 -337 2977 2342 309 254 79 35 chr1 10598358 10598472 -271595192 + MIR3 SINE MIR 78 196 -12 469 272 7 22 chr1 10599444 10599580 -271594084 + MIR SINE MIR 84 217 -45 207 100 0 0 chr1 10600118 10600148 -271593516 + (TG)n Simple_repeat Simple_repeat 1 30 0 308 153 0 14 chr1 10601071 10601143 -271592521 + (TG)n Simple_repeat Simple_repeat 2 72 0 256 272 0 43 chr1 10601405 10601497 -271592167 + GA-rich Low_complexity Low_complexity 2 89 0 291 140 0 0 chr1 10602102 10602152 -271591512 + (TC)n Simple_repeat Simple_repeat 2 51 0 450 0 0 0 chr1 10602599 10602649 -271591015 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 226 83 0 62 chr1 10602726 10602774 -271590890 + (GGAGA)n Simple_repeat Simple_repeat 1 45 0 240 137 6 93 chr1 10602829 10602990 -271590674 + (GGAGA)n Simple_repeat Simple_repeat 1 147 0 201 238 16 0 chr1 10603125 10603188 -271590476 + C-rich Low_complexity Low_complexity 4 67 0 184 390 48 19 chr1 10603574 10603784 -271589880 + L2 LINE L2 3012 3227 -45 29 78 0 0 chr1 10604030 10604094 -271589570 + GC_rich Low_complexity Low_complexity 1 64 0 35 24 0 0 chr1 10604124 10604166 -271589498 + GC_rich Low_complexity Low_complexity 1 42 0 313 289 11 5 chr1 10605190 10605311 -271588353 - MIR SINE MIR -62 146 34 234 261 31 0 chr1 10605432 10605497 -271588167 - Charlie8 DNA MER1_type -3 2414 2348 321 288 76 8 chr1 10605622 10605740 -271587924 + MIR SINE MIR 46 171 -91 326 258 136 50 chr1 10605851 10606072 -271587592 - LTR16C LTR ERVL -59 432 193 252 250 53 40 chr1 10606404 10606480 -271587184 - L2 LINE L2 -188 3084 3008 262 333 40 32 chr1 10606802 10606928 -271586736 - MER5A DNA MER1_type -35 154 28 390 204 0 0 chr1 10607424 10607532 -271586132 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 388 300 36 29 chr1 10607532 10607672 -271585992 - L2 LINE L2 0 3313 3173 2181 91 0 3 chr1 10608058 10608368 -271585296 - AluY SINE Alu 0 309 1 2160 121 0 9 chr1 10608380 10608695 -271584969 - AluSx SINE Alu 0 312 1 313 320 146 15 chr1 10608833 10609039 -271584625 - L2 LINE L2 -205 3067 2835 729 258 57 39 chr1 10609468 10609702 -271583962 - MIR SINE MIR -17 245 11 626 273 12 0 chr1 10610390 10610555 -271583109 - MIR3 SINE MIR 0 208 42 2112 131 0 0 chr1 10610580 10610885 -271582779 + AluSx SINE Alu 1 305 -7 282 299 58 0 chr1 10611056 10611143 -271582521 + MIR SINE MIR 95 186 -76 180 213 0 43 chr1 10611417 10611464 -271582200 - MIR SINE MIR -69 139 95 192 288 62 12 chr1 10611558 10611638 -271582026 + MIR SINE MIR 19 102 -160 1204 128 35 35 chr1 10612426 10612620 -271581044 - AluJb SINE Alu 0 316 120 2245 103 3 0 chr1 10612620 10612920 -271580744 + AluSp SINE Alu 1 301 -12 1204 128 35 35 chr1 10612920 10612956 -271580708 - AluJb SINE Alu -195 121 86 2534 184 37 29 chr1 10612975 10613465 -271580199 - L1MB5 LINE L1 0 6174 5681 2166 107 0 3 chr1 10613680 10613978 -271579686 - AluSx SINE Alu -15 297 1 191 274 44 80 chr1 10614132 10614245 -271579419 - MIR3 SINE MIR -2 206 98 268 259 49 12 chr1 10614334 10614415 -271579249 - MIR SINE MIR -75 187 104 457 328 79 11 chr1 10614668 10614857 -271578807 + MIR SINE MIR 50 251 -11 281 252 71 79 chr1 10615752 10615879 -271577785 - MIR SINE MIR -65 143 18 1591 167 10 33 chr1 10615896 10616196 -271577468 + AluJb SINE Alu 1 293 -19 2053 104 0 31 chr1 10616198 10616514 -271577150 + AluSg SINE Alu 1 307 0 264 228 76 13 chr1 10616580 10616659 -271577005 + MIR SINE MIR 2 85 -177 217 354 13 13 chr1 10616921 10617000 -271576664 + L2 LINE L2 3142 3220 -52 1273 227 181 83 chr1 10617048 10617307 -271576357 + L2 LINE L2 1901 2133 -1181 2074 138 0 0 chr1 10617307 10617603 -271576061 - AluJb SINE Alu -16 296 1 1273 227 181 83 chr1 10617603 10617636 -271576028 + L2 LINE L2 2133 2161 -1153 1170 226 78 10 chr1 10617636 10617932 -271575732 - MER33 DNA MER1_type -4 320 5 1273 227 181 83 chr1 10617932 10618155 -271575509 + L2 LINE L2 2161 2361 -953 1999 128 0 0 chr1 10618155 10618457 -271575207 + AluSq SINE Alu 1 302 0 1273 227 181 83 chr1 10618457 10618670 -271574994 + L2 LINE L2 2361 2552 -762 1459 162 23 53 chr1 10618670 10618972 -271574692 + AluSx SINE Alu 6 298 -14 1273 227 181 83 chr1 10618972 10619053 -271574611 + L2 LINE L2 2552 2793 -521 342 253 54 133 chr1 10619080 10619320 -271574344 + L2 LINE L2 2912 3189 -124 2226 110 0 0 chr1 10619320 10619628 -271574036 - AluSc SINE Alu 0 309 2 342 253 54 133 chr1 10619628 10619743 -271573921 + L2 LINE L2 3189 3312 -1 705 307 173 18 chr1 10619747 10619988 -271573676 - L1M4 LINE L1 -1195 4951 4749 1750 128 55 10 chr1 10619988 10620278 -271573386 - AluSq SINE Alu -10 303 1 1832 145 20 20 chr1 10620280 10620453 -271573211 - AluJb SINE Alu -8 304 129 198 0 0 0 chr1 10620453 10620475 -271573189 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1832 145 20 20 chr1 10620475 10620605 -271573059 - AluJb SINE Alu -182 130 1 705 307 173 18 chr1 10620605 10620754 -271572910 - L1M4 LINE L1 -1397 4749 4497 788 223 83 0 chr1 10620814 10620971 -271572693 - FAM SINE Alu -5 170 1 21 71 0 0 chr1 10620981 10621023 -271572641 + AT_rich Low_complexity Low_complexity 1 42 0 734 313 40 48 chr1 10621204 10621465 -271572199 + L1ME4a LINE L1 5320 5582 -539 2205 119 3 0 chr1 10621465 10621776 -271571888 - AluSx SINE Alu 0 312 1 1956 158 7 0 chr1 10621779 10622082 -271571582 - AluJb SINE Alu -7 305 1 734 313 40 48 chr1 10622082 10622435 -271571229 + L1ME4a LINE L1 5584 5933 -188 2411 77 0 10 chr1 10622442 10622755 -271570909 + AluY SINE Alu 2 311 0 3681 183 21 37 chr1 10622756 10623129 -271570535 + L1MB8 LINE L1 5296 5673 -505 2176 120 3 0 chr1 10623129 10623430 -271570234 + AluSx SINE Alu 1 302 -10 3681 183 21 37 chr1 10623430 10623880 -271569784 + L1MB8 LINE L1 5673 6106 -72 1922 164 0 0 chr1 10623880 10624173 -271569491 - AluJo SINE Alu -19 293 1 3681 183 21 37 chr1 10624173 10624245 -271569419 + L1MB8 LINE L1 6106 6178 0 1153 137 41 65 chr1 10624360 10624548 -271569116 + MER96B DNA MER1_type? 131 313 -104 1570 111 93 52 chr1 10624548 10624690 -271568974 + AluJb SINE Alu 1 136 -174 2222 101 3 3 chr1 10624690 10624996 -271568668 + AluSx SINE Alu 1 306 -6 1570 111 93 52 chr1 10624996 10625152 -271568512 + AluJb SINE Alu 136 310 0 1153 137 41 65 chr1 10625152 10625253 -271568411 + MER96B DNA MER1_type? 313 415 -2 30 117 0 0 chr1 10625498 10625661 -271568003 + GC_rich Low_complexity Low_complexity 1 163 0 26 50 0 0 chr1 10625838 10625878 -271567786 + GC_rich Low_complexity Low_complexity 1 40 0 195 370 63 16 chr1 10625942 10626131 -271567533 + L2 LINE L2 2869 3066 -247 382 237 53 9 chr1 10626285 10626399 -271567265 + MIR SINE MIR 19 137 -125 522 266 345 8 chr1 10626653 10627244 -271566420 + L2 LINE L2 1527 2316 -998 226 235 12 129 chr1 10627899 10627984 -271565680 - MER91A DNA MER1_type -65 75 1 923 272 60 23 chr1 10627996 10628349 -271565315 - MLT1I LTR MaLR 0 409 44 1571 231 119 39 chr1 10628370 10628507 -271565157 + L2 LINE L2 2315 2440 -873 2074 96 13 42 chr1 10628507 10628820 -271564844 + AluSq SINE Alu 1 304 -9 1571 231 119 39 chr1 10628820 10629436 -271564228 + L2 LINE L2 2440 3124 -189 325 367 92 15 chr1 10629443 10629778 -271563886 - L1M4c LINE L1 -5077 1307 947 270 0 0 0 chr1 10629778 10629808 -271563856 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 2085 147 0 3 chr1 10629826 10630138 -271563526 - AluSx SINE Alu -1 311 1 248 269 82 45 chr1 10630159 10630293 -271563371 + L2 LINE L2 3113 3251 -62 959 233 75 0 chr1 10630316 10630454 -271563210 + MIR SINE MIR 5 131 -131 2172 114 0 0 chr1 10630454 10630751 -271562913 + AluSx SINE Alu 1 297 -15 959 233 75 0 chr1 10630751 10630852 -271562812 + MIR SINE MIR 131 262 0 452 254 17 76 chr1 10630861 10630964 -271562700 + L1ME4a LINE L1 5616 5724 -397 2238 97 3 16 chr1 10630964 10631301 -271562363 - AluSp SINE Alu 0 313 1 452 254 17 76 chr1 10631301 10631433 -271562231 + L1ME4a LINE L1 5724 5837 -284 1950 142 0 19 chr1 10631433 10631743 -271561921 - AluJb SINE Alu 0 312 9 382 341 26 70 chr1 10631833 10632103 -271561561 + L1ME4a LINE L1 5861 6118 -3 2337 99 3 0 chr1 10632240 10632552 -271561112 + AluSq SINE Alu 1 313 0 2159 129 0 0 chr1 10632823 10633168 -271560496 - AluSx SINE Alu 0 345 1 587 191 0 0 chr1 10633311 10633421 -271560243 - MER21B LTR ERV1 -423 440 331 261 75 0 0 chr1 10634851 10634891 -271558773 + (TG)n Simple_repeat Simple_repeat 2 41 0 1991 130 10 3 chr1 10636124 10636423 -271557241 + AluSx SINE Alu 1 301 -11 330 87 0 0 chr1 10636423 10636469 -271557195 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 237 203 0 12 chr1 10636490 10636551 -271557113 - MIR SINE MIR -62 146 107 186 43 0 0 chr1 10636606 10636629 -271557035 + (GGA)n Simple_repeat Simple_repeat 1 23 0 375 296 79 37 chr1 10636708 10636897 -271556767 + MIR SINE MIR 20 216 -46 229 319 0 29 chr1 10638980 10639049 -271554615 - MIR SINE MIR -79 183 117 196 245 41 0 chr1 10639809 10639858 -271553806 - MIR SINE MIR -95 167 117 2205 132 0 0 chr1 10639933 10640244 -271553420 - AluSx SINE Alu -1 311 1 318 265 48 0 chr1 10640252 10640335 -271553329 + L2 LINE L2 3227 3313 0 589 303 39 6 chr1 10641309 10641487 -271552177 + MIR SINE MIR 21 204 -58 22 0 0 0 chr1 10642193 10642215 -271551449 + GC_rich Low_complexity Low_complexity 1 22 0 291 402 21 5 chr1 10644970 10645116 -271548548 - MIR SINE MIR -62 146 16 409 308 77 85 chr1 10645171 10645813 -271547851 + L2 LINE L2 2623 3264 -49 2227 101 34 0 chr1 10645847 10646144 -271547520 + AluSx SINE Alu 1 307 -5 535 253 20 13 chr1 10646592 10646742 -271546922 + MIR SINE MIR 35 185 -77 412 285 134 17 chr1 10647672 10647844 -271545820 + MIR SINE MIR 1 192 -70 330 204 0 0 chr1 10647957 10648050 -271545614 + (CA)n Simple_repeat Simple_repeat 1 93 0 341 315 9 9 chr1 10648745 10648853 -271544811 + MIR SINE MIR 47 154 -108 2290 109 3 0 chr1 10648905 10649207 -271544457 + AluSx SINE Alu 1 303 -9 314 357 14 14 chr1 10649342 10649482 -271544182 - MIR SINE MIR -77 185 46 245 286 71 14 chr1 10649721 10649791 -271543873 - MIR3 SINE MIR -23 185 112 355 281 91 78 chr1 10650017 10650348 -271543316 - L2 LINE L2 -96 3176 2842 1877 228 71 43 chr1 10650360 10650939 -271542725 - MLT1G1 LTR MaLR 0 595 1 385 275 109 0 chr1 10651710 10651848 -271541816 + L2 LINE L2 3119 3271 -1 2389 74 0 0 chr1 10651876 10652197 -271541467 + AluY SINE Alu 1 321 0 289 222 79 0 chr1 10652199 10652262 -271541402 + L2 LINE L2 3241 3308 -5 279 259 49 25 chr1 10652283 10652364 -271541300 + L2 LINE L2 3188 3270 -2 324 128 0 0 chr1 10653614 10653661 -271540003 + L2 LINE L2 3264 3310 -3 421 292 39 0 chr1 10653820 10653950 -271539714 + MIR SINE MIR 99 233 -29 1921 181 7 0 chr1 10654178 10654488 -271539176 + AluJb SINE Alu 1 312 0 300 348 84 0 chr1 10654492 10654647 -271539017 + HAL1 LINE L1 1140 1307 -1200 217 301 12 12 chr1 10654736 10654819 -271538845 - MIR SINE MIR -97 165 83 617 259 5 49 chr1 10654914 10655119 -271538545 - MIR SINE MIR -17 245 50 284 212 254 8 chr1 10655203 10655321 -271538343 - MER5B DNA MER1_type -4 174 28 503 200 150 50 chr1 10655378 10655538 -271538126 - MER5A DNA MER1_type -7 182 7 393 255 11 0 chr1 10655552 10655646 -271538018 - MER5B DNA MER1_type 0 178 84 515 207 39 67 chr1 10655661 10655776 -271537888 + MER5B DNA MER1_type 3 113 -65 2553 60 0 3 chr1 10655776 10656077 -271537587 - AluY SINE Alu -11 300 1 515 207 39 67 chr1 10656077 10656140 -271537524 + MER5B DNA MER1_type 113 176 -2 1818 115 31 15 chr1 10656256 10656517 -271537147 - AluSq SINE Alu -7 306 42 2460 97 3 0 chr1 10656535 10656845 -271536819 - AluSq SINE Alu -2 311 1 681 292 69 15 chr1 10657462 10657826 -271535838 - L1MC4a LINE L1 -107 6014 5629 330 187 93 0 chr1 10658133 10658208 -271535456 - LTR67 LTR ERVL -5 552 471 2536 65 0 0 chr1 10658208 10658500 -271535164 + AluY SINE Alu 1 292 -19 1486 160 14 98 chr1 10658582 10658952 -271534712 + L1ME LINE L1 5039 5439 -727 2480 96 0 3 chr1 10658952 10659266 -271534398 + AluSp SINE Alu 1 313 0 1486 160 14 98 chr1 10659266 10659363 -271534301 + L1ME LINE L1 5439 5457 -709 2242 105 3 17 chr1 10659363 10659658 -271534006 + AluSx SINE Alu 1 291 -21 1486 160 14 98 chr1 10659658 10659801 -271533863 + L1ME LINE L1 5457 5610 -556 * 3244 157 30 30 chr1 10659795 10660285 -271533379 - L1MB5 LINE L1 -247 5927 5435 1833 162 17 10 chr1 10660285 10660582 -271533082 - AluJb SINE Alu -13 299 1 3244 157 30 30 chr1 10660582 10660761 -271532903 - L1MB5 LINE L1 -738 5436 5258 1873 143 14 27 chr1 10660772 10661065 -271532599 - AluJo SINE Alu -12 300 12 1961 201 85 20 chr1 10661074 10661186 -271532478 - L1MB5 LINE L1 -1322 4824 4721 2320 129 8 18 chr1 10661186 10661580 -271532084 + MLT1B LTR MaLR 1 390 0 1961 201 85 20 chr1 10661580 10661974 -271531690 - L1MB5 LINE L1 -1425 4721 4285 775 170 133 32 chr1 10661974 10662018 -271531646 + MER63 DNA MER1_type 102 140 -921 2118 139 7 0 chr1 10662018 10662313 -271531351 + AluSx SINE Alu 1 297 -15 775 170 133 32 chr1 10662313 10662456 -271531208 + MER63 DNA MER1_type 140 308 -753 1988 135 25 0 chr1 10662472 10662754 -271530910 + AluJb SINE Alu 1 289 -23 2056 92 0 0 chr1 10662774 10663023 -271530641 + AluSg SINE Alu 1 249 -61 216 0 0 0 chr1 10663023 10663047 -271530617 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 650 261 153 5 chr1 10663124 10663346 -271530318 + MER110A LTR ERV1 56 310 -158 372 121 0 0 chr1 10663354 10663412 -271530252 - AluSq SINE Alu -1 300 243 1527 73 0 11 chr1 10663415 10663606 -271530058 - AluSq SINE Alu -124 189 1 687 228 37 7 chr1 10663606 10663816 -271529848 + MER110A LTR ERV1 272 491 0 * 2282 181 12 2 chr1 10663816 10664229 -271529435 + MER63 DNA MER1_type 433 849 -212 649 195 0 9 chr1 10664231 10664344 -271529320 + FLAM_C SINE Alu 6 117 -26 360 0 0 0 chr1 10664347 10664387 -271529277 + (TAA)n Simple_repeat Simple_repeat 2 41 0 911 176 25 42 chr1 10664391 10664466 -271529198 + MER63 DNA MER1_type 827 902 -158 1986 166 7 0 chr1 10664466 10664774 -271528890 - AluJb SINE Alu -2 310 1 911 176 25 42 chr1 10664774 10664817 -271528847 + MER63 DNA MER1_type 902 944 -116 2560 43 0 20 chr1 10664817 10665116 -271528548 - AluY SINE Alu -18 293 1 911 176 25 42 chr1 10665116 10665234 -271528430 + MER63 DNA MER1_type 944 1060 0 465 264 88 7 chr1 10665234 10665382 -271528282 + L1ME1 LINE L1 5999 6158 -8 236 324 20 29 chr1 10665491 10665593 -271528071 - LTR67 LTR ERVL -193 364 264 274 224 0 47 chr1 10665622 10665707 -271527957 - MLT1J LTR MaLR -321 190 110 * 655 281 0 18 chr1 10665649 10665820 -271527844 - LTR67 LTR ERVL -386 171 4 185 296 56 0 chr1 10666107 10666161 -271527503 - L2 LINE L2 -214 3058 3002 2143 133 0 0 chr1 10666170 10666463 -271527201 + AluSx SINE Alu 1 293 -19 2389 84 3 16 chr1 10666474 10666783 -271526881 + AluSq SINE Alu 1 305 -8 2352 79 3 0 chr1 10666783 10667074 -271526590 + AluY SINE Alu 1 292 -19 1695 175 3 43 chr1 10667263 10667388 -271526276 + AluJo SINE Alu 1 129 -183 2250 101 0 17 chr1 10667388 10667685 -271525979 - AluSg SINE Alu -18 292 1 1695 175 3 43 chr1 10667685 10667862 -271525802 + AluJo SINE Alu 129 291 -21 1579 156 13 80 chr1 10667882 10668023 -271525641 + L1MB3 LINE L1 5820 5969 -214 2315 133 37 42 chr1 10668023 10668214 -271525450 + MSTB LTR MaLR 1 191 -235 2136 120 7 0 chr1 10668214 10668513 -271525151 + AluSx SINE Alu 1 301 -11 2162 134 0 0 chr1 10668521 10668826 -271524838 + AluSx SINE Alu 1 305 -7 2315 133 37 42 chr1 10668826 10669053 -271524611 + MSTB LTR MaLR 198 426 0 1579 156 13 80 chr1 10669053 10669251 -271524413 + L1MB3 LINE L1 5969 6132 -51 761 156 31 0 chr1 10669251 10669379 -271524285 + FLAM_C SINE Alu 2 133 0 1579 156 13 80 chr1 10669379 10669428 -271524236 + L1MB3 LINE L1 6132 6183 0 195 47 23 47 chr1 10669442 10669470 -271524194 + (TA)n Simple_repeat Simple_repeat 2 29 -14 2419 65 3 0 chr1 10669470 10669762 -271523902 - AluY SINE Alu -18 293 1 2336 100 0 13 chr1 10669764 10670063 -271523601 - AluSx SINE Alu -17 295 1 195 47 23 47 chr1 10670063 10670074 -271523590 + (TA)n Simple_repeat Simple_repeat 30 43 0 315 71 0 0 chr1 10670080 10670122 -271523542 + (CA)n Simple_repeat Simple_repeat 2 43 0 1315 65 130 0 chr1 10670141 10670341 -271523323 - MER30 DNA MER1_type 0 230 5 340 246 0 116 chr1 10670512 10670650 -271523014 + L1MCa LINE L1 1995 2116 -4310 205 266 115 35 chr1 10670799 10670824 -271522840 - L2 LINE L2 -154 3118 3096 1876 134 0 0 chr1 10670824 10671078 -271522586 + AluSx SINE Alu 1 254 -58 205 266 115 35 chr1 10671078 10671165 -271522499 - L2 LINE L2 -176 3096 2997 736 220 13 98 chr1 10672594 10672830 -271520834 - MIR SINE MIR 0 262 47 191 261 43 0 chr1 10672936 10673005 -271520659 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 10673011 10673064 -271520600 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 23 chr1 10673100 10673144 -271520520 + MIR SINE MIR 106 148 -114 2288 110 3 0 chr1 10673146 10673446 -271520218 + AluSx SINE Alu 2 302 -10 2320 88 7 3 chr1 10673494 10673789 -271519875 + AluSx SINE Alu 4 299 -13 1143 166 37 9 chr1 10673790 10674007 -271519657 + MLT1B LTR MaLR 166 388 -2 197 277 0 0 chr1 10674010 10674057 -271519607 + MIR3 SINE MIR 134 180 -28 244 234 0 0 chr1 10674176 10674223 -271519441 + AluSx SINE Alu 247 293 -9 2179 97 4 4 chr1 10674247 10674526 -271519138 + AluSx SINE Alu 21 299 -13 845 235 36 18 chr1 10674527 10674748 -271518916 - MLT1C LTR MaLR -58 409 185 416 143 0 0 chr1 10674750 10674820 -271518844 - AluSc SINE Alu -4 305 236 297 83 7 13 chr1 10674821 10674885 -271518779 - AluSp SINE Alu -133 170 112 * 640 180 29 7 chr1 10674860 10674999 -271518665 - MLT1C LTR MaLR -280 187 46 1266 166 0 0 chr1 10675000 10675187 -271518477 - AluJb SINE Alu -14 298 112 2125 134 0 0 chr1 10675209 10675501 -271518163 + AluSx SINE Alu 8 299 -13 2294 112 0 6 chr1 10675830 10676142 -271517522 + AluSx SINE Alu 1 310 -2 1221 57 11 11 chr1 10676169 10676345 -271517319 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1461 174 70 40 chr1 10676358 10676656 -271517008 + AluJo SINE Alu 1 307 -5 908 169 62 0 chr1 10676656 10676816 -271516848 + AluJb SINE Alu 139 308 -4 363 78 0 0 chr1 10676816 10676867 -271516797 + (GA)n Simple_repeat Simple_repeat 1 51 0 477 50 0 0 chr1 10676867 10676927 -271516737 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 927 231 27 60 chr1 10677098 10677396 -271516268 + Charlie4 DNA MER1_type 1 288 -1673 1934 78 0 0 chr1 10677423 10677653 -271516011 + AluSx SINE Alu 1 230 -82 180 296 0 0 chr1 10678226 10678270 -271515394 - MIR SINE MIR 0 262 219 24 60 0 30 chr1 10678270 10678294 -271515370 + AT_rich Low_complexity Low_complexity 1 24 -41 2240 108 0 10 chr1 10678294 10678609 -271515055 + AluSq SINE Alu 1 312 0 24 60 0 30 chr1 10678609 10678650 -271515014 + AT_rich Low_complexity Low_complexity 24 65 0 2067 94 85 51 chr1 10678660 10679012 -271514652 - THE1B LTR MaLR 0 364 1 1944 159 7 10 chr1 10679271 10679573 -271514091 + AluJb SINE Alu 1 301 -11 2292 110 3 10 chr1 10679906 10680214 -271513450 - AluSx SINE Alu 0 312 7 614 237 119 83 chr1 10680265 10680443 -271513221 - L2 LINE L2 -925 2389 2219 986 226 78 10 chr1 10680443 10680739 -271512925 + MER33 DNA MER1_type 5 320 -4 614 237 119 83 chr1 10680739 10680772 -271512892 - L2 LINE L2 -1095 2219 2189 2167 138 0 0 chr1 10680772 10681068 -271512596 + AluJb SINE Alu 1 296 -16 614 237 119 83 chr1 10681068 10681327 -271512337 - L2 LINE L2 -1125 2189 1901 197 329 13 26 chr1 10681375 10681451 -271512213 - L2 LINE L2 -52 3220 3146 247 216 81 14 chr1 10681721 10681795 -271511869 - MIR SINE MIR -182 80 2 2154 101 0 31 chr1 10681861 10682177 -271511487 - AluSg SINE Alu 0 307 1 1660 167 10 33 chr1 10682179 10682479 -271511185 - AluJb SINE Alu -19 293 1 240 250 70 86 chr1 10682496 10682624 -271511040 + MIR SINE MIR 18 143 -65 398 328 79 11 chr1 10683520 10683709 -271509955 - MIR SINE MIR -11 251 50 251 216 0 0 chr1 10683962 10684013 -271509651 + MIR SINE MIR 104 154 -108 2156 145 0 0 chr1 10684399 10684710 -271508954 + AluSx SINE Alu 1 311 -1 2354 101 0 0 chr1 10684999 10685297 -271508367 - AluSx SINE Alu -14 298 1 1002 267 76 64 chr1 10685491 10686071 -271507593 - L1ME4a LINE L1 -1 6120 5534 196 184 0 0 chr1 10686759 10686797 -271506867 + MIR3 SINE MIR 160 197 -11 293 256 141 105 chr1 10687880 10688157 -271505507 + L2 LINE L2 2841 3127 -145 2577 80 0 0 chr1 10688225 10688536 -271505128 - AluSx SINE Alu -1 311 1 725 273 17 0 chr1 10688556 10688732 -271504932 + MIR SINE MIR 36 214 -48 2394 78 3 0 chr1 10689230 10689524 -271504140 + AluSq SINE Alu 1 295 -18 276 229 41 107 chr1 10689627 10689749 -271503915 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 10690015 10690303 -271503361 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 10690341 10690513 -271503151 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 283 240 10 83 chr1 10690513 10690609 -271503055 - L2 LINE L2 0 3272 3184 389 315 0 15 chr1 10690700 10690830 -271502834 + MIR3 SINE MIR 31 158 -50 693 283 50 5 chr1 10691721 10691940 -271501724 + MIR SINE MIR 33 261 -1 193 333 39 0 chr1 10691958 10692036 -271501628 + MIR3 SINE MIR 106 186 -22 591 251 166 5 chr1 10693778 10693965 -271499699 + MIR SINE MIR 27 243 -19 205 348 27 27 chr1 10694244 10694356 -271499308 + L2 LINE L2 3134 3245 -27 1522 89 0 11 chr1 10694664 10694855 -271498809 + AluSx SINE Alu 1 189 -123 507 253 195 0 chr1 10694952 10695126 -271498538 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 10695126 10695163 -271498501 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2249 97 0 7 chr1 10695163 10695452 -271498212 - AluSq SINE Alu -26 287 1 260 305 34 38 chr1 10695667 10695825 -271497839 - MIR3 SINE MIR -62 146 3 369 313 8 16 chr1 10696364 10696492 -271497172 - MIR SINE MIR -45 217 91 220 345 0 46 chr1 10696483 10696570 -271497094 + L2 LINE L2 3189 3271 -1 * 441 346 33 33 chr1 10696613 10696856 -271496808 - MIR SINE MIR -15 247 5 195 264 58 46 chr1 10697613 10697700 -271495964 - MIR3 SINE MIR -113 95 8 * 761 259 78 9 chr1 10697640 10697872 -271495792 + MIR SINE MIR 11 258 -4 444 255 19 0 chr1 10697953 10698059 -271495605 - MER81 DNA DNA -1 113 6 222 313 108 0 chr1 10698648 10698731 -271494933 - MIR SINE MIR -60 202 111 280 294 194 50 chr1 10699260 10699420 -271494244 - MIR SINE MIR -44 218 36 478 289 69 39 chr1 10699454 10699658 -271494006 + MIR SINE MIR 18 227 -35 209 154 123 92 chr1 10700758 10700823 -271492841 - L2 LINE L2 0 3313 3247 201 319 44 35 chr1 10700926 10701039 -271492625 + L2 LINE L2 3141 3254 -18 2217 106 0 0 chr1 10701070 10701525 -271492139 - AluSx SINE Alu 0 455 1 678 279 90 21 chr1 10702272 10702505 -271491159 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 10702856 10702913 -271490751 + G-rich Low_complexity Low_complexity 2 56 0 376 220 189 30 chr1 10703523 10703655 -271490009 - MIR3 SINE MIR -53 155 3 1172 374 7 56 chr1 10704067 10704372 -271489292 - AluSx SINE Alu -12 290 1 211 323 85 49 chr1 10704444 10704608 -271489056 - MIR SINE MIR -79 183 14 * 322 358 25 31 chr1 10704593 10704755 -271488909 + L2 LINE L2 2894 3054 -218 597 228 8 8 chr1 10704773 10704900 -271488764 - L2 LINE L2 0 3313 3187 2597 61 7 0 chr1 10705035 10705345 -271488319 - AluSx SINE Alu 0 312 1 670 228 37 7 chr1 10705345 10705555 -271488109 + MER110A LTR ERV1 272 491 0 * 2279 181 12 2 chr1 10705555 10705968 -271487696 + MER63 DNA MER1_type 433 849 -212 699 195 0 9 chr1 10705970 10706083 -271487581 + FLAM_C SINE Alu 6 117 -26 279 0 0 0 chr1 10706086 10706117 -271487547 + (TAA)n Simple_repeat Simple_repeat 2 32 0 927 177 17 43 chr1 10706123 10706192 -271487472 + MER63 DNA MER1_type 835 904 -156 1980 166 7 0 chr1 10706192 10706500 -271487164 - AluJb SINE Alu -2 310 1 927 177 17 43 chr1 10706500 10706543 -271487121 + MER63 DNA MER1_type 904 947 -113 2542 43 0 20 chr1 10706543 10706842 -271486822 - AluY SINE Alu -18 293 1 927 177 17 43 chr1 10706842 10706960 -271486704 + MER63 DNA MER1_type 947 1060 0 463 264 88 7 chr1 10706960 10707108 -271486556 + L1ME1 LINE L1 5999 6158 -8 619 281 0 18 chr1 10707375 10707546 -271486118 - LTR67 LTR ERVL -386 171 4 200 296 56 0 chr1 10707833 10707887 -271485777 - L2 LINE L2 -214 3058 3002 2142 130 0 0 chr1 10707896 10708189 -271485475 + AluSx SINE Alu 1 293 -19 2402 81 3 16 chr1 10708200 10708509 -271485155 + AluSq SINE Alu 1 305 -8 2117 104 10 0 chr1 10708509 10708798 -271484866 + AluY SINE Alu 1 292 -19 354 290 25 6 chr1 10709095 10709257 -271484407 + (CA)n Simple_repeat Simple_repeat 2 166 0 427 302 13 0 chr1 10709297 10709446 -271484218 + (CA)n Simple_repeat Simple_repeat 2 152 0 421 321 12 2 chr1 10709500 10710011 -271483653 + (CA)n Simple_repeat Simple_repeat 1 516 0 260 256 22 0 chr1 10710039 10710227 -271483437 + (CA)n Simple_repeat Simple_repeat 1 192 0 275 272 123 21 chr1 10712039 10712467 -271481197 + L1ME LINE L1 5189 5671 -450 311 280 75 9 chr1 10712487 10712594 -271481070 + L1M4 LINE L1 3016 3129 -3017 * 554 346 97 29 chr1 10712591 10713135 -271480529 - L1 LINE L1 -3261 2885 2305 241 161 71 0 chr1 10713136 10713192 -271480472 - FAM SINE Alu 0 179 120 1081 180 10 15 chr1 10713192 10713398 -271480266 - AluJo SINE Alu -107 205 1 586 228 183 13 chr1 10713709 10713966 -271479698 - L1ME3 LINE L1 -1 6163 5876 1600 56 9 56 chr1 10714073 10714289 -271479375 - AluY SINE Alu -50 261 56 486 309 66 37 chr1 10714299 10714649 -271479015 + L1ME LINE L1 75 434 -5636 1228 297 80 54 chr1 10714885 10715886 -271477778 + L1ME LINE L1 570 1609 -4652 4066 116 7 0 chr1 10715886 10716436 -271477228 - MER41A LTR ERV1 0 554 1 1228 297 80 54 chr1 10716436 10716667 -271476997 + L1ME LINE L1 1609 1833 -4428 2108 140 0 0 chr1 10716673 10716965 -271476699 - AluSx SINE Alu -16 296 5 285 231 102 0 chr1 10717066 10717174 -271476490 + L1ME LINE L1 1842 1960 -4301 23 0 0 0 chr1 10717243 10717266 -271476398 + AT_rich Low_complexity Low_complexity 1 23 0 445 239 341 0 chr1 10717283 10717459 -271476205 - MIR SINE MIR -24 238 3 374 147 28 6 chr1 10717543 10717656 -271476008 - MLT2F LTR ERVL 0 663 479 2359 107 0 0 chr1 10717740 10718048 -271475616 - AluSg1 SINE Alu -1 308 1 580 330 122 42 chr1 10718055 10718597 -271475067 - L1M4 LINE L1 -1467 4679 4095 333 315 0 0 chr1 10718733 10718825 -271474839 - L2 LINE L2 0 3313 3222 186 71 0 0 chr1 10719167 10719195 -271474469 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2024 119 0 11 chr1 10719195 10719481 -271474183 - AluSx SINE Alu -29 283 1 1865 180 0 19 chr1 10719649 10719966 -271473698 - AluJb SINE Alu -1 311 1 1492 252 225 21 chr1 10719966 10720839 -271472825 - L2 LINE L2 -9 3304 2239 1045 195 20 76 chr1 10720839 10721142 -271472522 + L1MC4 LINE L1 7756 8041 -1 546 216 37 6 chr1 10721138 10721300 -271472364 + L1ME3A LINE L1 1615 1781 -4615 * 252 151 132 0 chr1 10721519 10721572 -271472092 - Charlie1 DNA MER1_type -4 2757 2698 587 251 120 0 chr1 10721572 10721747 -271471917 + L1MC4a LINE L1 7089 7284 -524 923 253 101 29 chr1 10721760 10722082 -271471582 + L1ME3A LINE L1 2134 2431 -3784 1866 124 87 0 chr1 10722082 10722357 -271471307 + AluSx SINE Alu 1 299 -13 923 253 101 29 chr1 10722357 10722639 -271471025 + L1ME3A LINE L1 2431 2737 -3478 944 245 162 10 chr1 10722647 10722961 -271470703 + L1ME3A LINE L1 5444 5805 -434 317 247 71 0 chr1 10722981 10723066 -271470598 + L1ME3A LINE L1 5866 5956 -283 481 167 0 0 chr1 10723653 10723725 -271469939 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2804 233 46 4 chr1 10723747 10724507 -271469157 + L1ME LINE L1 3736 4527 -1553 2577 64 0 6 chr1 10724507 10724820 -271468844 - AluSq SINE Alu -2 311 1 288 304 34 38 chr1 10725035 10725193 -271468471 - MIR3 SINE MIR -62 146 3 384 305 8 16 chr1 10725732 10725860 -271467804 - MIR SINE MIR -45 217 91 220 345 0 46 chr1 10725851 10725938 -271467726 + L2 LINE L2 3189 3271 -1 * 441 346 33 33 chr1 10725981 10726224 -271467440 - MIR SINE MIR -15 247 5 741 261 87 9 chr1 10727008 10727238 -271466426 + MIR SINE MIR 11 258 -4 430 264 19 0 chr1 10727319 10727425 -271466239 - MER81 DNA DNA -1 113 6 222 313 108 0 chr1 10728014 10728097 -271465567 - MIR SINE MIR -60 202 111 1521 192 32 6 chr1 10728860 10729173 -271464491 + L1MB5 LINE L1 5848 6168 -6 2587 167 61 6 chr1 10729177 10729716 -271463948 + L1MB8 LINE L1 5550 6118 -60 237 329 128 76 chr1 10729725 10730270 -271463394 - L2 LINE L2 -12 3260 2688 1994 125 21 3 chr1 10730270 10730605 -271463059 + L1MA5 LINE L1 5960 6300 0 200 83 0 28 chr1 10730702 10730738 -271462926 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 212 368 85 0 chr1 10730804 10730910 -271462754 - L2 LINE L2 -665 2649 2535 216 0 0 0 chr1 10731438 10731462 -271462202 + (CA)n Simple_repeat Simple_repeat 1 24 0 994 247 18 5 chr1 10731489 10731708 -271461956 + MIR SINE MIR 2 223 -39 203 292 35 111 chr1 10731966 10732137 -271461527 - MIR SINE MIR -34 228 71 2192 113 0 0 chr1 10733432 10733750 -271459914 - AluSx SINE Alu 0 318 1 209 148 0 19 chr1 10733892 10733946 -271459718 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 886 123 11 22 chr1 10733966 10734145 -271459519 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 348 204 9 19 chr1 10734153 10734261 -271459403 + CT-rich Low_complexity Low_complexity 3 109 0 218 259 190 43 chr1 10734826 10734994 -271458670 - MIR3 SINE MIR -54 154 3 499 227 91 8 chr1 10735494 10735626 -271458038 - MIR SINE MIR -37 225 83 466 262 28 0 chr1 10736041 10736195 -271457469 - MIR SINE MIR -65 143 28 192 214 0 0 chr1 10736567 10736623 -271457041 + (CA)n Simple_repeat Simple_repeat 2 57 0 382 240 0 0 chr1 10738652 10738727 -271454937 - MIR SINE MIR -121 141 67 820 228 81 9 chr1 10738879 10739090 -271454574 + MIR SINE MIR 26 251 -11 496 348 163 12 chr1 10739956 10740471 -271453193 - L2 LINE L2 -646 2668 2076 661 209 7 22 chr1 10740473 10740612 -271453052 - FRAM SINE Alu -12 164 28 13778 96 31 4 chr1 10740712 10742865 -271450799 - L1P LINE L1 -1588 4558 2348 998 277 100 22 chr1 10943310 10943741 -271249923 + MLT1K LTR MaLR 7 497 -91 297 246 169 39 chr1 10944833 10944963 -271248701 - L2 LINE L2 -3 3269 3123 199 182 0 45 chr1 10944982 10945026 -271248638 + L2 LINE L2 3267 3308 -5 644 143 76 17 chr1 10945458 10945577 -271248087 + FLAM_C SINE Alu 5 130 -3 5468 136 30 15 chr1 10945970 10946356 -271247308 + L1MC1 LINE L1 5421 5799 -534 2286 106 3 0 chr1 10946356 10946667 -271246997 + AluSx SINE Alu 1 312 0 5468 136 30 15 chr1 10946667 10947168 -271246496 + L1MC1 LINE L1 5799 6322 -11 2050 135 7 0 chr1 10947203 10947499 -271246165 + AluSx SINE Alu 1 298 -14 1079 239 139 16 chr1 10947539 10947978 -271245686 + L1ME3 LINE L1 5668 6160 -2 213 39 0 0 chr1 10947984 10948010 -271245654 + (CA)n Simple_repeat Simple_repeat 1 26 0 1592 116 0 21 chr1 10948739 10948972 -271244692 + AluSx SINE Alu 18 245 -67 200 35 35 0 chr1 10949487 10949516 -271244148 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 226 60 24 chr1 10949980 10950064 -271243600 + MLT1K LTR MaLR 473 559 -29 263 220 0 0 chr1 10950067 10950117 -271243547 + MER117 DNA MER1_type 44 93 -104 686 299 0 6 chr1 10950272 10950449 -271243215 + MIR SINE MIR 2 177 -85 370 336 50 52 chr1 10951688 10952069 -271241595 + L2 LINE L2 2855 3234 -38 1502 159 91 34 chr1 10952069 10952389 -271241275 + MER44D DNA MER2_type 1 608 -1 1839 149 0 10 chr1 10952439 10952740 -271240924 - AluJo SINE Alu -14 298 1 1017 249 70 50 chr1 10953558 10953862 -271239802 - MLT1J LTR MaLR 0 615 204 2184 98 0 0 chr1 10953862 10954184 -271239480 + AluSx SINE Alu 1 322 0 1017 249 70 50 chr1 10954184 10954257 -271239407 - MLT1J LTR MaLR -411 204 134 421 294 169 25 chr1 10954488 10954648 -271239016 + MIR SINE MIR 39 221 -41 256 298 96 62 chr1 10954806 10955014 -271238650 + MLT1H LTR MaLR 112 326 -223 359 283 54 50 chr1 10955557 10955878 -271237786 - L2 LINE L2 -222 3050 2726 334 205 39 13 chr1 10956240 10956318 -271237346 + MIR SINE MIR 35 114 -148 1984 130 0 3 chr1 10956357 10956672 -271236992 + AluSx SINE Alu 1 314 0 840 220 13 0 chr1 10956680 10956856 -271236808 + FRAM SINE Alu 1 178 0 893 281 33 0 chr1 10956859 10957101 -271236563 - MIR SINE MIR -8 254 5 660 281 71 5 chr1 10957315 10957525 -271236139 - MIR SINE MIR -35 227 4 385 278 196 0 chr1 10957930 10958063 -271235601 + MIR SINE MIR 103 261 -1 418 141 11 22 chr1 10958143 10958235 -271235429 + GA-rich Low_complexity Low_complexity 3 93 0 228 189 113 19 chr1 10958492 10958545 -271235119 + MIR3 SINE MIR 106 163 -45 337 231 121 5 chr1 10958925 10959064 -271234600 + MIR SINE MIR 4 153 -60 503 216 144 24 chr1 10959071 10959238 -271234426 + MIR SINE MIR 21 207 -55 310 160 0 0 chr1 10959820 10959870 -271233794 + AluJb SINE Alu 3 52 -250 180 0 0 0 chr1 10959895 10959915 -271233749 + (TAA)n Simple_repeat Simple_repeat 3 22 0 1388 154 57 4 chr1 10959956 10960202 -271233462 + AluJb SINE Alu 37 295 -17 335 352 63 0 chr1 10960657 10960816 -271232848 - MIR3 SINE MIR -11 197 29 317 300 79 32 chr1 10960899 10961089 -271232575 - MIR SINE MIR -12 250 52 396 263 30 0 chr1 10961510 10961624 -271232040 - MIR SINE MIR -61 147 37 731 251 5 35 chr1 10961991 10962194 -271231470 - MIR SINE MIR -8 254 58 223 316 128 8 chr1 10962355 10962488 -271231176 + L3b LINE CR1 1310 1458 -125 21 36 0 0 chr1 10964737 10964765 -271228899 + GC_rich Low_complexity Low_complexity 1 28 0 250 270 18 55 chr1 10966179 10966342 -271227322 + (CA)n Simple_repeat Simple_repeat 1 157 0 333 0 0 0 chr1 10966552 10966589 -271227075 + (CA)n Simple_repeat Simple_repeat 1 37 0 234 0 0 0 chr1 10966913 10966939 -271226725 + (TC)n Simple_repeat Simple_repeat 1 26 0 204 125 0 0 chr1 10966939 10966971 -271226693 + (CA)n Simple_repeat Simple_repeat 2 33 0 644 296 27 11 chr1 10967410 10967596 -271226068 + MIR3 SINE MIR 5 193 -15 180 250 42 0 chr1 10967756 10967804 -271225860 - MIR SINE MIR -142 120 71 234 91 0 0 chr1 10967885 10967918 -271225746 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 630 303 51 0 chr1 10969200 10969395 -271224269 - MIR SINE MIR 0 262 58 340 229 21 31 chr1 10969731 10969827 -271223837 - MIR SINE MIR -68 140 46 556 268 77 0 chr1 10970015 10970183 -271223481 - MIR SINE MIR -34 228 48 574 72 0 36 chr1 10970849 10970932 -271222732 - MADE1 DNA Mariner 0 80 1 589 311 6 0 chr1 10971562 10971729 -271221935 - MIR SINE MIR 0 262 95 1682 171 14 3 chr1 10972561 10972854 -271220810 - AluJo SINE Alu -16 296 1 201 180 0 60 chr1 10972902 10972952 -271220712 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 279 0 0 0 chr1 10974513 10974544 -271219120 + (TG)n Simple_repeat Simple_repeat 2 32 0 214 264 19 0 chr1 10974695 10974748 -271218916 + MIR SINE MIR 97 150 -112 388 273 72 7 chr1 10975496 10975635 -271218029 - MIR3 SINE MIR -15 193 46 2269 102 0 3 chr1 10976130 10976444 -271217220 - AluSq SINE Alu 0 313 1 193 310 35 11 chr1 10976688 10976775 -271216889 + MIR SINE MIR 162 250 -12 339 278 94 67 chr1 10977123 10977198 -271216466 + MER5A DNA MER1_type 1 72 -117 1391 178 31 52 chr1 10977198 10977514 -271216150 + AluJb SINE Alu 1 310 0 339 278 94 67 chr1 10977514 10977617 -271216047 + MER5A DNA MER1_type 72 185 -4 2783 3 0 0 chr1 10977716 10978023 -271215641 + AluYa5 SINE Alu 1 307 -4 2361 184 28 61 chr1 10978893 10979318 -271214346 - MLT2B1 LTR ERVL 0 520 115 2156 109 3 0 chr1 10979318 10979612 -271214052 + AluSx SINE Alu 1 295 -17 2361 184 28 61 chr1 10979612 10979724 -271213940 - MLT2B1 LTR ERVL -405 115 1 520 276 105 44 chr1 10979944 10980172 -271213492 + MIR SINE MIR 20 261 -1 2246 98 10 3 chr1 10980988 10981294 -271212370 + AluSx SINE Alu 3 310 -2 394 233 47 62 chr1 10981418 10981547 -271212117 + MIR3 SINE MIR 58 184 -24 283 321 96 24 chr1 10981595 10981804 -271211860 - L3b LINE CR1 -131 1452 1229 390 149 74 50 chr1 10981838 10981959 -271211705 - L1ME4a LINE L1 -1 6120 5997 198 71 0 0 chr1 10982241 10982269 -271211395 + (CAGAGA)n Simple_repeat Simple_repeat 3 30 0 224 270 113 25 chr1 10982685 10982844 -271210820 - MIR3 SINE MIR -7 201 29 33 0 0 0 chr1 10983063 10983096 -271210568 + AT_rich Low_complexity Low_complexity 1 33 0 2134 107 21 34 chr1 10983096 10983269 -271210395 - L1PB1 LINE L1 -8 6143 5974 2259 68 0 10 chr1 10983269 10983563 -271210101 - AluY SINE Alu -20 291 1 2134 107 21 34 chr1 10983563 10983716 -271209948 - L1PB1 LINE L1 -177 5974 5821 512 270 41 63 chr1 10983874 10983913 -271209751 - L1MC4 LINE L1 -80 7962 7924 1970 142 0 7 chr1 10983913 10984222 -271209442 - AluJo SINE Alu 0 312 6 512 270 41 63 chr1 10984222 10984501 -271209163 - L1MC4 LINE L1 -118 7924 7651 632 285 51 33 chr1 10984599 10984813 -271208851 + MIR SINE MIR 20 237 -25 1210 73 11 11 chr1 10984987 10985166 -271208498 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2071 107 0 0 chr1 10985169 10985449 -271208215 - AluSx SINE Alu -32 280 1 405 278 17 9 chr1 10985464 10985579 -271208085 + MIR SINE MIR 19 134 -74 322 371 46 57 chr1 10985583 10985863 -271207801 - L1MEd LINE L1 -4206 2104 1828 2366 74 3 10 chr1 10985899 10986210 -271207454 - AluSp SINE Alu -4 309 1 1950 133 13 10 chr1 10986285 10986586 -271207078 - AluJo SINE Alu -8 304 3 1660 272 80 47 chr1 10986623 10987183 -271206481 - L1MEd LINE L1 -4654 1656 1116 1840 131 3 54 chr1 10987183 10987497 -271206167 - AluSx SINE Alu -13 299 2 1660 272 80 47 chr1 10987497 10988163 -271205501 - L1MEd LINE L1 -5194 1116 294 2297 111 39 28 chr1 10988163 10988523 -271205141 + THE1B LTR MaLR 1 364 0 1660 272 80 47 chr1 10988523 10988782 -271204882 - L1MEd LINE L1 -6016 294 45 325 263 53 44 chr1 10988829 10988943 -271204721 - L2 LINE L2 0 3272 3158 5630 108 50 22 chr1 10988999 10989911 -271203753 + Tigger1 DNA MER2_type 2 939 -1479 9346 93 26 30 chr1 10990584 10990801 -271202863 + Tigger1 DNA MER2_type 952 1168 -1250 2080 129 3 0 chr1 10990801 10991103 -271202561 + AluSp SINE Alu 1 303 -10 9346 93 26 30 chr1 10991103 10992358 -271201306 + Tigger1 DNA MER2_type 1168 2418 0 765 262 56 9 chr1 10992381 10992614 -271201050 - MIR SINE MIR -12 250 7 189 107 0 0 chr1 10993190 10993218 -271200446 + (CA)n Simple_repeat Simple_repeat 1 28 0 187 279 117 27 chr1 10993222 10993333 -271200331 + L2 LINE L2 3148 3268 -4 23 0 0 0 chr1 10993344 10993367 -271200297 + AT_rich Low_complexity Low_complexity 1 23 0 1683 221 24 3 chr1 10993367 10993707 -271199957 - MER7A DNA MER2_type -1 345 1 396 0 0 0 chr1 10993915 10993959 -271199705 + (CA)n Simple_repeat Simple_repeat 2 45 0 533 151 36 24 chr1 10994256 10994422 -271199242 + CT-rich Low_complexity Low_complexity 2 169 0 2095 118 10 0 chr1 10994962 10995251 -271198413 + AluSx SINE Alu 1 292 -20 994 200 22 0 chr1 10995884 10996069 -271197595 - MER3 DNA MER1_type -5 204 16 2085 198 101 17 chr1 10996150 10996615 -271197049 - MLT1D LTR MaLR -1 504 1 255 207 17 0 chr1 10996633 10996691 -271196973 - MIR SINE MIR -67 141 83 535 301 52 41 chr1 10996694 10997029 -271196635 + LTR16A LTR ERVL 1 351 -106 778 305 108 24 chr1 10997089 10997596 -271196068 + L2 LINE L2 2729 3269 -3 2240 106 0 6 chr1 10998186 10998498 -271195166 + AluSx SINE Alu 1 310 -2 714 304 21 17 chr1 10998800 10999040 -271194624 - MIR SINE MIR -4 258 18 3889 269 71 24 chr1 10999199 10999726 -271193938 + L2 LINE L2 1548 2049 -1264 7222 54 15 0 chr1 10999726 11001022 -271192642 - L1PA6 LINE L1 0 6154 4846 3889 269 71 24 chr1 11001022 11001433 -271192231 + L2 LINE L2 2049 2439 -874 2280 98 0 0 chr1 11001433 11001739 -271191925 - AluSx SINE Alu -6 306 1 3889 269 71 24 chr1 11001739 11002263 -271191401 + L2 LINE L2 2439 3095 -218 2202 112 0 0 chr1 11002263 11002558 -271191106 + AluSx SINE Alu 1 295 -17 3889 269 71 24 chr1 11002558 11002788 -271190876 + L2 LINE L2 3095 3313 0 346 100 100 43 chr1 11003327 11003397 -271190267 + MER81 DNA DNA 1 74 -40 5136 149 14 33 chr1 11003661 11003969 -271189695 + MER49 LTR ERV1 1 313 -610 2241 112 0 0 chr1 11003969 11004282 -271189382 + AluSq SINE Alu 1 313 0 5136 149 14 33 chr1 11004282 11004767 -271188897 + MER49 LTR ERV1 313 777 -146 2360 167 43 14 chr1 11004767 11005181 -271188483 + MSTB LTR MaLR 1 426 0 5136 149 14 33 chr1 11005181 11005305 -271188359 + MER49 LTR ERV1 777 902 -21 2046 134 0 31 chr1 11005379 11005699 -271187965 + AluSx SINE Alu 1 310 -2 2368 118 30 33 chr1 11006280 11006645 -271187019 - THE1B LTR MaLR 0 364 1 2301 141 66 24 chr1 11006801 11007212 -271186452 + MSTA LTR MaLR 1 428 0 356 197 0 40 chr1 11007262 11007338 -271186326 - MIR SINE MIR -113 149 77 471 18 0 0 chr1 11007606 11007662 -271186002 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr1 11007726 11007748 -271185916 + AT_rich Low_complexity Low_complexity 1 22 0 219 306 14 0 chr1 11007897 11007969 -271185695 - L2 LINE L2 -14 3258 3186 346 253 29 0 chr1 11008269 11008391 -271185273 - MIR SINE MIR -71 137 7 242 318 10 99 chr1 11008385 11008577 -271185087 - MIR SINE MIR -1 261 87 * 1622 130 93 11 chr1 11008781 11009050 -271184614 + AluSx SINE Alu 1 291 -21 246 105 0 0 chr1 11009147 11009185 -271184479 + (TG)n Simple_repeat Simple_repeat 2 39 0 183 263 18 0 chr1 11010114 11010171 -271183493 + MIR SINE MIR 47 104 -158 2000 107 20 20 chr1 11010252 11010552 -271183112 - AluSx SINE Alu -12 300 1 405 311 130 6 chr1 11010559 11010720 -271182944 + MIR SINE MIR 51 231 -31 198 311 39 29 chr1 11011074 11011177 -271182487 + L2 LINE L2 2693 2796 -518 413 207 11 11 chr1 11011184 11011271 -271182393 - MLT1B LTR MaLR -38 352 266 2292 100 3 0 chr1 11011484 11011794 -271181870 - AluSx SINE Alu -1 311 1 236 139 23 0 chr1 11011794 11011837 -271181827 + LTR43 LTR ERV1 191 234 -368 2214 111 3 9 chr1 11011840 11012155 -271181509 - AluSq SINE Alu 0 313 1 894 252 34 51 chr1 11012155 11012202 -271181462 + LTR43 LTR ERV1 191 237 -365 2045 108 0 11 chr1 11012202 11012568 -271181096 - AluSx SINE Alu 0 363 1 894 252 34 51 chr1 11012568 11012813 -271180851 + LTR43 LTR ERV1 237 479 -123 1738 148 41 0 chr1 11012845 11013136 -271180528 - AluJb SINE Alu -1 311 9 968 266 103 18 chr1 11013165 11013552 -271180112 - MLT1D LTR MaLR -85 420 1 739 274 179 43 chr1 11013575 11013845 -271179819 + L2 LINE L2 2837 3069 -244 1747 159 0 35 chr1 11013845 11014159 -271179505 - AluJb SINE Alu -9 303 1 739 274 179 43 chr1 11014159 11014308 -271179356 + L2 LINE L2 3069 3313 0 234 304 76 0 chr1 11014310 11014402 -271179262 - L2 LINE L2 -37 3276 3178 287 243 146 29 chr1 11014566 11014669 -271178995 + L2 LINE L2 3158 3272 0 2107 116 3 3 chr1 11016255 11016558 -271177106 - AluSx SINE Alu -9 303 1 616 310 104 51 chr1 11017679 11017948 -271175716 + L2 LINE L2 2693 2947 -366 1892 146 0 10 chr1 11017948 11018243 -271175421 + AluSx SINE Alu 1 292 -20 616 310 104 51 chr1 11018243 11018552 -271175112 + L2 LINE L2 2947 3313 0 618 324 6 0 chr1 11018620 11018796 -271174868 + MER117 DNA MER1_type 15 191 -6 397 228 88 26 chr1 11019198 11019312 -271174352 - MIR SINE MIR -71 137 17 430 29 88 0 chr1 11020588 11020656 -271173008 + (CCCTAA)n Simple_repeat Simple_repeat 5 78 0 378 312 98 10 chr1 11020916 11021121 -271172543 - MIR SINE MIR -6 256 34 508 311 25 36 chr1 11021230 11021426 -271172238 + MIR SINE MIR 15 208 -54 465 196 254 0 chr1 11021708 11021902 -271171762 - L2 LINE L2 -317 2996 2758 192 276 52 0 chr1 11021920 11021978 -271171686 + MIR SINE MIR 202 262 0 512 196 17 22 chr1 11022226 11022405 -271171259 + GA-rich Low_complexity Low_complexity 3 180 0 308 280 12 36 chr1 11023606 11023774 -271169890 + (CCCA)n Simple_repeat Simple_repeat 3 166 0 337 349 8 0 chr1 11023820 11023952 -271169712 + MIR SINE MIR 20 152 -56 345 205 42 34 chr1 11025914 11026141 -271167523 + Harlequin LTR ERV1 886 1108 -5788 530 80 0 93 chr1 11026148 11026310 -271167354 + (CAGAGA)n Simple_repeat Simple_repeat 5 151 0 437 295 69 21 chr1 11026813 11027009 -271166655 - MIR SINE MIR -40 222 16 553 256 74 47 chr1 11027652 11027842 -271165822 - Charlie8 DNA MER1_type -65 265 65 2054 116 0 14 chr1 11027842 11028167 -271165497 - AluSq SINE Alu 0 313 1 553 256 74 47 chr1 11028167 11028234 -271165430 - Charlie8 DNA MER1_type -265 65 1 399 325 113 4 chr1 11029234 11029465 -271164199 + MIR SINE MIR 5 260 -2 1569 189 21 0 chr1 11030464 11030749 -271162915 + L1MB3 LINE L1 5893 6183 0 214 303 15 0 chr1 11031546 11031612 -271162052 - MIR SINE MIR -61 147 81 189 0 0 0 chr1 11031756 11031777 -271161887 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 2222 103 6 0 chr1 11031819 11032130 -271161534 + AluSq SINE Alu 1 313 0 351 270 173 27 chr1 11032203 11032388 -271161276 + MIR SINE MIR 14 225 -37 366 226 73 17 chr1 11033542 11033666 -271159998 - MIR SINE MIR -62 146 27 247 261 78 0 chr1 11033840 11033941 -271159723 + MIR SINE MIR 31 147 -62 501 299 36 36 chr1 11035036 11035230 -271158434 - MIR3 SINE MIR -1 207 14 1695 215 60 54 chr1 11035290 11035774 -271157890 - MLT1D LTR MaLR -10 495 9 428 274 115 13 chr1 11035818 11035975 -271157689 - MIR SINE MIR -70 192 20 450 317 82 0 chr1 11037263 11037446 -271156218 - MIR SINE MIR -6 256 59 201 281 62 41 chr1 11037441 11037587 -271156077 - L2 LINE L2 -273 2999 2851 * 260 326 41 0 chr1 11037668 11037766 -271155898 - MIR3 SINE MIR -46 162 61 241 220 17 0 chr1 11037961 11038020 -271155644 + MIR SINE MIR 85 144 -64 476 271 73 0 chr1 11038263 11038414 -271155250 + MIR SINE MIR 98 259 -3 1287 180 113 158 chr1 11038416 11038509 -271155155 + MLT1C LTR MaLR 3 99 -368 1853 104 4 12 chr1 11038509 11038768 -271154896 + AluSx SINE Alu 1 257 -55 1287 180 113 158 chr1 11038768 11039080 -271154584 + MLT1C LTR MaLR 99 467 0 1516 241 67 14 chr1 11039940 11040375 -271153289 - MLT1C LTR MaLR -5 462 5 2202 103 3 0 chr1 11040584 11040885 -271152779 + AluSx SINE Alu 1 302 -10 792 251 10 34 chr1 11041122 11041329 -271152335 - MIR SINE MIR -17 245 44 267 304 96 0 chr1 11041594 11041719 -271151945 + MIR3 SINE MIR 1 137 -71 227 304 196 9 chr1 11041793 11041905 -271151759 + MIR SINE MIR 21 153 -109 218 321 0 48 chr1 11042518 11042602 -271151062 + MIR SINE MIR 46 125 -83 193 267 67 17 chr1 11042751 11042811 -271150853 + L2 LINE L2 3227 3289 -24 1973 115 0 7 chr1 11043369 11043655 -271150009 - AluSx SINE Alu -12 300 17 264 337 131 31 chr1 11044000 11044291 -271149373 - L2 LINE L2 -5 3267 2948 272 237 10 62 chr1 11044293 11044390 -271149274 + MER117 DNA MER1_type 69 160 -37 406 144 198 18 chr1 11044414 11044525 -271149139 - MIR SINE MIR -59 149 19 871 215 10 41 chr1 11044532 11044639 -271149025 - MER5A DNA MER1_type 0 189 89 1624 168 21 14 chr1 11044639 11044930 -271148734 - AluJb SINE Alu -8 304 12 871 215 10 41 chr1 11044930 11045017 -271148647 - MER5A DNA MER1_type -100 89 1 219 232 37 61 chr1 11045045 11045127 -271148537 + MIR SINE MIR 117 196 -66 727 189 92 6 chr1 11045157 11045321 -271148343 + MER5B DNA MER1_type 1 178 0 194 247 173 12 chr1 11045323 11045347 -271148317 + MER5A DNA MER1_type 51 70 -119 2202 97 0 10 chr1 11045347 11045635 -271148029 + AluSp SINE Alu 1 279 -34 1108 98 0 22 chr1 11045635 11045819 -271147845 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2202 97 0 10 chr1 11045819 11045854 -271147810 + AluSp SINE Alu 279 313 0 194 247 173 12 chr1 11045854 11045910 -271147754 + MER5A DNA MER1_type 70 144 -45 * 261 218 18 0 chr1 11045857 11045912 -271147752 - MER5A DNA MER1_type -80 109 54 257 298 53 26 chr1 11046057 11046171 -271147493 - L2 LINE L2 -1 3312 3196 1143 255 158 41 chr1 11046297 11046830 -271146834 - MLT1G1 LTR MaLR 0 595 1 492 291 143 9 chr1 11046878 11047108 -271146556 - MIR SINE MIR 0 262 2 245 290 112 47 chr1 11047195 11047302 -271146362 - L2 LINE L2 -257 3056 2943 309 350 11 6 chr1 11047782 11047959 -271145705 + CT-rich Low_complexity Low_complexity 2 179 0 308 341 138 7 chr1 11048552 11048690 -271144974 - MIR SINE MIR -87 175 20 2515 174 80 54 chr1 11051390 11051925 -271141739 - MLT2B3 LTR ERVL 0 554 6 304 315 33 30 chr1 11051931 11052072 -271141592 + MIR SINE MIR 68 212 -32 895 246 14 27 chr1 11052280 11052500 -271141164 - MIR SINE MIR 0 262 46 2268 154 137 0 chr1 11052642 11053044 -271140620 + MSTB2 LTR MaLR 1 457 0 249 328 57 11 chr1 11053078 11053201 -271140463 + MIR SINE MIR 6 132 -76 389 291 0 0 chr1 11053232 11053318 -271140346 + MER5A DNA MER1_type 9 94 -95 217 278 105 53 chr1 11053368 11053501 -271140163 + L2 LINE L2 3174 3313 0 1068 293 94 44 chr1 11053741 11054837 -271138827 - L1MEc LINE L1 -4303 2093 943 381 190 13 0 chr1 11055087 11055166 -271138498 + MADE1 DNA Mariner 1 80 0 375 207 12 0 chr1 11055186 11055268 -271138396 + L1MB8 LINE L1 5861 5943 -235 707 286 113 3 chr1 11055278 11055596 -271138068 - L2 LINE L2 -642 2672 2320 2221 93 0 0 chr1 11056341 11056630 -271137034 - AluSx SINE Alu -23 289 1 488 285 64 76 chr1 11056632 11056962 -271136702 - L2 LINE L2 -13 3300 2975 540 197 49 8 chr1 11057696 11057818 -271135846 - L1MA10 LINE L1 -3 6331 6205 1601 173 17 3 chr1 11057820 11058115 -271135549 + AluJo SINE Alu 1 299 -13 3660 217 67 28 chr1 11058115 11058324 -271135340 - L1MEc LINE L1 -2763 3452 3253 1545 123 28 16 chr1 11058324 11058577 -271135087 - L1MA1 LINE L1 0 6302 6047 3660 217 67 28 chr1 11058577 11059509 -271134155 - L1MEc LINE L1 -2962 3253 2241 1957 95 7 4 chr1 11059509 11059805 -271133859 + AluY SINE Alu 11 307 0 3660 217 67 28 chr1 11059805 11060370 -271133294 - L1MEc LINE L1 -3974 2241 1700 1693 154 13 32 chr1 11060370 11060481 -271133183 + AluJo SINE Alu 1 113 -199 2638 95 3 14 chr1 11060481 11060840 -271132824 - THE1A LTR MaLR 0 355 1 12324 82 2 10 chr1 11060840 11062432 -271131232 - THE1A-int LTR MaLR 0 1580 1 2804 64 3 11 chr1 11062432 11062790 -271130874 - THE1A LTR MaLR 0 355 1 1693 154 13 32 chr1 11062790 11062987 -271130677 + AluJo SINE Alu 110 305 -7 767 247 87 31 chr1 11062987 11063368 -271130296 - L1MEc LINE L1 -4688 1708 1307 549 210 249 24 chr1 11063402 11063607 -271130057 - L1MEc LINE L1 -6143 253 3 27 0 0 0 chr1 11063629 11063656 -271130008 + AT_rich Low_complexity Low_complexity 1 27 0 802 216 18 0 chr1 11063794 11063961 -271129703 - MER5B DNA MER1_type 0 178 9 310 236 191 11 chr1 11064700 11064789 -271128875 - L2 LINE L2 0 3272 3168 411 264 23 16 chr1 11066120 11066249 -271127415 - MIR SINE MIR -70 192 63 274 196 69 4 chr1 11066494 11066583 -271127081 + MIR SINE MIR 33 137 -71 246 296 49 0 chr1 11066828 11066909 -271126755 - L2 LINE L2 0 3272 3188 728 273 32 14 chr1 11067469 11067689 -271125975 - MIR SINE MIR -32 230 7 331 296 43 62 chr1 11068081 11068243 -271125421 + MER91B DNA MER1_type 18 176 -14 403 289 28 85 chr1 11068312 11068523 -271125141 + MIR SINE MIR 37 235 -27 449 348 81 5 chr1 11069799 11070020 -271123644 + MIR SINE MIR 25 262 0 222 317 139 47 chr1 11070676 11071080 -271122584 - L2 LINE L2 -5 3267 2827 274 175 0 90 chr1 11071082 11071259 -271122405 + G-rich Low_complexity Low_complexity 2 162 0 238 145 16 65 chr1 11071271 11071333 -271122331 + G-rich Low_complexity Low_complexity 1 59 0 201 74 0 0 chr1 11071345 11071372 -271122292 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 273 325 212 0 chr1 11071516 11071799 -271121865 - L2 LINE L2 -526 2788 2446 429 0 0 264 chr1 11072213 11072452 -271121212 + (CAGC)n Simple_repeat Simple_repeat 4 179 0 * 438 133 0 87 chr1 11072343 11072639 -271121025 + (CAGCC)n Simple_repeat Simple_repeat 1 270 0 201 259 176 0 chr1 11072771 11072856 -271120808 + MIR SINE MIR 89 188 -74 217 222 60 54 chr1 11073101 11073268 -271120396 + (CAGAG)n Simple_repeat Simple_repeat 3 170 0 357 334 17 6 chr1 11074420 11074777 -271118887 + C-rich Low_complexity Low_complexity 1 361 0 697 235 75 5 chr1 11075275 11075475 -271118189 + MIR SINE MIR 13 226 -36 1284 124 4 68 chr1 11075592 11075826 -271117838 - AluJo SINE Alu -7 305 87 577 301 170 16 chr1 11075930 11076242 -271117422 + L2 LINE L2 2912 3271 -1 1977 121 31 14 chr1 11076744 11077034 -271116630 - AluSx SINE Alu -17 295 1 2184 99 13 0 chr1 11077070 11077374 -271116290 + AluY SINE Alu 1 308 -3 804 349 101 9 chr1 11077462 11077889 -271115775 + L2 LINE L2 2848 3313 0 189 266 93 93 chr1 11077904 11078043 -271115621 + L2 LINE L2 3119 3257 -56 399 275 158 0 chr1 11078229 11078400 -271115264 - L2 LINE L2 -1 3312 3115 305 311 66 0 chr1 11079062 11079184 -271114480 - MIR3 SINE MIR -49 159 30 452 259 28 42 chr1 11081568 11081711 -271111953 - MIR3 SINE MIR -49 159 19 237 287 126 0 chr1 11082101 11082188 -271111476 + MIR SINE MIR 44 141 -67 1628 166 48 48 chr1 11082442 11082494 -271111170 - L1MB3 LINE L1 0 6183 6132 183 42 0 0 chr1 11082494 11082518 -271111146 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1959 104 14 28 chr1 11082518 11082805 -271110859 - AluSx SINE Alu -29 283 1 1628 166 48 48 chr1 11082805 11083049 -271110615 - L1MB3 LINE L1 -50 6133 5883 2331 88 7 3 chr1 11083049 11083356 -271110308 - AluSx SINE Alu -4 308 1 1628 166 48 48 chr1 11083356 11083436 -271110228 - L1MB3 LINE L1 -299 5884 5805 222 118 0 0 chr1 11083529 11083563 -271110101 + (CACG)n Simple_repeat Simple_repeat 1 34 0 402 316 85 45 chr1 11083695 11083942 -271109722 - L2 LINE L2 -75 3197 2941 418 278 57 17 chr1 11084346 11084522 -271109142 - MIR SINE MIR -1 261 79 225 308 19 47 chr1 11085389 11085496 -271108168 + MIR3 SINE MIR 105 208 0 232 308 94 8 chr1 11086576 11086693 -271106971 - MIR SINE MIR -75 187 61 1260 248 72 19 chr1 11087719 11088147 -271105517 - MLT1C LTR MaLR -1 466 16 403 360 114 0 chr1 11088153 11088328 -271105336 - MIR SINE MIR -56 206 12 1408 175 67 4 chr1 11088886 11089154 -271104510 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 11089167 11089189 -271104475 + (TAA)n Simple_repeat Simple_repeat 1 22 0 211 229 181 24 chr1 11089367 11089450 -271104214 - MIR SINE MIR -59 203 108 185 377 35 9 chr1 11090171 11090285 -271103379 - MIR SINE MIR -62 146 30 665 329 50 4 chr1 11090353 11090630 -271103034 + L1MC/D LINE L1 5441 5730 -2078 190 278 82 21 chr1 11090769 11090866 -271102798 - L2 LINE L2 -575 2739 2637 231 345 108 7 chr1 11091202 11091350 -271102314 + MIR SINE MIR 59 221 -41 234 342 118 58 chr1 11091906 11092269 -271101395 + L2 LINE L2 2811 3195 -77 188 254 211 0 chr1 11092832 11092903 -271100761 - MIR SINE MIR -90 118 33 423 284 37 15 chr1 11093058 11093192 -271100472 - MIR SINE MIR -70 192 56 195 220 40 0 chr1 11093335 11093385 -271100279 + MIR SINE MIR 70 121 -141 698 261 76 33 chr1 11093388 11093718 -271099946 - MLT1H LTR MaLR -1 548 205 2108 124 0 13 chr1 11093759 11094074 -271099590 + AluSx SINE Alu 1 311 -1 883 296 63 19 chr1 11094095 11094501 -271099163 + MLT1B LTR MaLR 34 390 0 772 245 58 77 chr1 11094501 11094817 -271098847 + MLT1C LTR MaLR 157 466 -1 630 262 84 5 chr1 11094817 11095008 -271098656 - MLT1H LTR MaLR -342 207 2 206 318 146 0 chr1 11095013 11095123 -271098541 + MIR SINE MIR 123 248 -14 214 274 151 0 chr1 11095155 11095228 -271098436 + L2 LINE L2 3168 3251 -21 889 231 0 0 chr1 11096789 11096962 -271096702 + AluJo SINE Alu 122 294 -18 525 144 22 44 chr1 11096970 11097151 -271096513 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2333 79 0 29 chr1 11097515 11097831 -271095833 - AluY SINE Alu -4 307 1 1904 143 20 3 chr1 11097833 11098126 -271095538 - AluJo SINE Alu -14 298 1 1754 220 93 29 chr1 11098553 11099062 -271094602 + L1ME3 LINE L1 5548 6100 -62 2502 50 0 0 chr1 11099062 11099361 -271094303 - AluY SINE Alu -12 299 1 1754 220 93 29 chr1 11099361 11099429 -271094235 + L1ME3 LINE L1 6100 6162 0 2070 102 11 0 chr1 11099429 11099714 -271093950 - AluSx SINE Alu -24 288 1 1127 288 81 34 chr1 11100778 11101174 -271092490 - L2 LINE L2 0 3313 2839 1779 175 0 7 chr1 11101174 11101471 -271092193 + AluJo SINE Alu 1 295 -17 1127 288 81 34 chr1 11101471 11101620 -271092044 - L2 LINE L2 -474 2839 2699 1541 208 40 103 chr1 11101652 11102177 -271091487 + MLT2B1 LTR ERVL 27 518 -2 313 216 80 0 chr1 11102180 11102268 -271091396 - L2 LINE L2 -629 2685 2591 2992 164 25 4 chr1 11102817 11103293 -271090371 - MER66B LTR ERV1 0 486 1 340 397 43 5 chr1 11103353 11103537 -271090127 + MIR3 SINE MIR 13 203 -5 290 321 207 0 chr1 11104337 11104477 -271089187 - MIR SINE MIR -24 238 70 514 308 104 23 chr1 11104824 11105123 -271088541 - MLT1K LTR MaLR -128 460 138 307 115 0 0 chr1 11105176 11105228 -271088436 + MLT1G LTR MaLR 12 63 -532 694 149 104 52 chr1 11105245 11105399 -271088265 + MER70A LTR ERVL 1 162 -310 * 1634 218 52 8 chr1 11105395 11105762 -271087902 + MER70A LTR ERVL 90 472 0 341 315 11 11 chr1 11105762 11105925 -271087739 + MLT1G LTR MaLR 79 241 -308 686 219 25 6 chr1 11105942 11106102 -271087562 + MLT1G LTR MaLR 426 588 -2 219 69 0 0 chr1 11106104 11106133 -271087531 + (TG)n Simple_repeat Simple_repeat 1 29 0 604 324 49 0 chr1 11106823 11107027 -271086637 + MIR SINE MIR 4 217 -45 268 146 21 0 chr1 11108666 11108714 -271084950 + L2 LINE L2 3265 3313 0 208 385 83 0 chr1 11108815 11108924 -271084740 - L2 LINE L2 0 3272 3155 237 33 0 0 chr1 11109432 11109462 -271084202 + (CA)n Simple_repeat Simple_repeat 1 30 0 243 294 156 0 chr1 11110086 11110195 -271083469 + MIR3 SINE MIR 35 160 -48 758 186 8 0 chr1 11111138 11111262 -271082402 + AluJo SINE Alu 1 125 -187 704 143 8 0 chr1 11111264 11111390 -271082274 + GA-rich Low_complexity Low_complexity 1 127 0 789 175 88 29 chr1 11111403 11111574 -271082090 + AluJo SINE Alu 120 300 -12 1345 165 0 56 chr1 11111584 11111800 -271081864 + L1M4 LINE L1 4961 5155 -991 2097 106 33 0 chr1 11111800 11112102 -271081562 + AluSx SINE Alu 1 312 0 1345 165 0 56 chr1 11112102 11112206 -271081458 + L1M4 LINE L1 5155 5263 -883 588 259 90 21 chr1 11112227 11112416 -271081248 + MIR SINE MIR 50 251 -11 193 338 62 48 chr1 11112607 11112752 -271080912 + MER5A DNA MER1_type 15 161 -28 354 317 11 27 chr1 11113375 11113558 -271080106 + L1ME4a LINE L1 5733 5912 -209 1456 159 86 28 chr1 11113565 11113778 -271079886 + AluJo SINE Alu 6 242 -70 2379 188 38 23 chr1 11113778 11114257 -271079407 + MER66B LTR ERV1 1 486 0 1456 159 86 28 chr1 11114257 11114333 -271079331 + AluJo SINE Alu 242 312 0 417 211 48 78 chr1 11114369 11114535 -271079129 + L1ME4a LINE L1 5960 6120 -1 1535 228 78 42 chr1 11115110 11115561 -271078103 + MLT1C LTR MaLR 1 467 0 489 269 17 0 chr1 11115590 11115709 -271077955 - MIR SINE MIR -95 167 47 459 355 39 0 chr1 11115780 11115935 -271077729 + MIR SINE MIR 48 208 -54 515 270 40 3 chr1 11116805 11116956 -271076708 - MIR SINE MIR -62 146 30 1059 206 0 5 chr1 11117043 11117247 -271076417 + MER58A DNA MER1_type 22 224 0 194 425 45 0 chr1 11117250 11117384 -271076280 + MIR SINE MIR 113 252 -10 2271 82 16 3 chr1 11117389 11117692 -271075972 - AluY SINE Alu -4 307 1 2177 116 0 0 chr1 11117939 11118241 -271075423 - AluSq SINE Alu -11 302 1 600 259 6 36 chr1 11118609 11118775 -271074889 + MER91B DNA MER1_type 4 164 -26 260 325 12 0 chr1 11118783 11118863 -271074801 - L2 LINE L2 -54 3259 3179 635 204 43 10 chr1 11119458 11119631 -271074033 + MIR SINE MIR 1 176 -78 940 127 0 61 chr1 11319643 11319824 -270873840 - AluJb SINE Alu -134 178 9 321 152 29 21 chr1 11319928 11320018 -270873646 + Alu SINE Alu 242 297 -3 1835 123 0 38 chr1 11320040 11320356 -270873308 - AluJb SINE Alu 0 312 9 956 211 28 83 chr1 11320396 11320591 -270873073 + L1MC4 LINE L1 7650 7868 -174 2017 120 3 3 chr1 11320591 11320883 -270872781 - AluSx SINE Alu -20 292 1 956 211 28 83 chr1 11320883 11321049 -270872615 + L1MC4 LINE L1 7868 8042 0 1561 165 23 0 chr1 11321173 11321439 -270872225 - AluJb SINE Alu -40 272 1 2049 87 31 0 chr1 11321448 11321734 -270871930 - AluSp SINE Alu -18 295 1 680 259 13 13 chr1 11321766 11321924 -270871740 + AluJo SINE Alu 2 159 -153 269 26 26 0 chr1 11321926 11321964 -270871700 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 519 255 8 0 chr1 11322017 11322160 -270871504 - L1MC4 LINE L1 0 8042 7650 828 180 41 5 chr1 11322183 11322377 -270871287 + AluSx SINE Alu 1 201 -111 1095 175 60 5 chr1 11324713 11324930 -270868734 + AluJo SINE Alu 64 292 -20 1161 136 212 12 chr1 11324940 11325190 -270868474 + Tigger2 DNA MER2_type 2418 2717 -1 1094 161 11 0 chr1 11325199 11325385 -270868279 - AluJb SINE Alu -2 310 123 23 33 0 0 chr1 11325407 11325437 -270868227 + AT_rich Low_complexity Low_complexity 1 30 0 1072 192 0 60 chr1 11325477 11325711 -270867953 - AluJo SINE Alu -92 220 1 1116 128 174 58 chr1 11326156 11326414 -270867250 - MER7A DNA MER2_type -1 345 60 1817 117 4 7 chr1 11326489 11326763 -270866901 + AluSx SINE Alu 27 299 -13 288 0 0 0 chr1 11326789 11326821 -270866843 + (TG)n Simple_repeat Simple_repeat 2 33 0 475 141 13 13 chr1 11326839 11326917 -270866747 + AluJ/FLAM SINE Alu 6 83 -229 480 348 47 40 chr1 11327174 11327531 -270866133 - L2 LINE L2 -562 2752 2390 2208 99 0 3 chr1 11327531 11327833 -270865831 - AluSx SINE Alu -10 302 2 480 348 47 40 chr1 11327833 11327877 -270865787 - L2 LINE L2 -924 2390 2348 300 291 20 41 chr1 11328004 11328049 -270865615 + L1MA8 LINE L1 5784 5828 -463 1856 151 10 7 chr1 11328049 11328354 -270865310 + AluSx SINE Alu 1 306 -6 1011 155 21 5 chr1 11328354 11328541 -270865123 + L1PB4 LINE L1 5823 6012 -144 203 216 171 0 chr1 11329140 11329213 -270864451 - MIR SINE MIR -81 127 34 2283 93 0 3 chr1 11329288 11329601 -270864063 + AluSx SINE Alu 1 312 0 298 151 170 0 chr1 11329620 11329673 -270863991 + AluJ/FLAM SINE Alu 1 62 -240 2517 59 0 0 chr1 11329673 11329978 -270863686 + AluSx SINE Alu 1 305 -7 1690 135 7 28 chr1 11330371 11330510 -270863154 + AluSx SINE Alu 1 141 -171 1803 117 36 36 chr1 11330510 11330819 -270862845 + AluSq SINE Alu 1 309 -4 1690 135 7 28 chr1 11330819 11330968 -270862696 + AluSx SINE Alu 141 283 -29 292 275 33 22 chr1 11330981 11331072 -270862592 + L1MC3 LINE L1 7050 7141 -644 1384 170 61 11 chr1 11331257 11331534 -270862130 + AluJo SINE Alu 1 291 -21 1200 140 6 0 chr1 11331545 11331723 -270861941 + AluSc SINE Alu 1 179 -130 2063 84 7 3 chr1 11331906 11332190 -270861474 + AluSp SINE Alu 16 300 -13 1204 186 33 36 chr1 11332196 11332316 -270861348 + AluJb SINE Alu 1 120 -192 2362 80 3 0 chr1 11332316 11332616 -270861048 + AluSp SINE Alu 1 301 -12 1204 186 33 36 chr1 11332616 11332796 -270860868 + AluJb SINE Alu 120 300 -12 423 266 84 35 chr1 11332800 11332880 -270860784 + LTR33A LTR ERVL 309 384 -139 2507 128 79 12 chr1 11332880 11333308 -270860356 + MSTB2 LTR MaLR 1 457 0 423 266 84 35 chr1 11333308 11333430 -270860234 + LTR33A LTR ERVL 384 521 -2 1498 186 10 16 chr1 11333459 11333766 -270859898 + AluJb SINE Alu 1 305 -7 271 111 0 0 chr1 11333767 11333803 -270859861 + AluS SINE Alu 29 64 -239 1649 156 0 7 chr1 11334186 11334462 -270859202 + AluJo SINE Alu 9 282 -30 363 315 55 36 chr1 11334482 11334647 -270859017 - MIR SINE MIR 0 262 95 534 187 98 8 chr1 11334672 11334795 -270858869 - MIR3 SINE MIR -60 148 15 246 210 320 0 chr1 11335356 11335456 -270858208 - MIR SINE MIR -14 248 117 1951 86 41 0 chr1 11335460 11335728 -270857936 + AluSx SINE Alu 3 281 -31 216 0 0 0 chr1 11335735 11335759 -270857905 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 254 214 0 0 chr1 11335814 11335856 -270857808 + Tigger2 DNA MER2_type 2627 2668 -50 349 165 62 21 chr1 11336429 11336526 -270857138 - L1MC4 LINE L1 -464 7578 7478 2101 107 3 13 chr1 11336534 11336844 -270856820 + AluSg SINE Alu 1 307 -3 1283 143 152 0 chr1 11336852 11337096 -270856568 + AluJo SINE Alu 2 282 -30 625 300 29 63 chr1 11337118 11337332 -270856332 - L1MC5 LINE L1 -191 7770 7550 1929 147 3 6 chr1 11337332 11337645 -270856019 - AluJb SINE Alu 0 312 1 625 300 29 63 chr1 11337645 11337906 -270855758 - L1MC5 LINE L1 -411 7550 7311 610 267 21 62 chr1 11337948 11338040 -270855624 - L1MC4 LINE L1 -606 7436 7342 2507 50 0 3 chr1 11338040 11338342 -270855322 + AluY SINE Alu 1 301 -10 610 267 21 62 chr1 11338342 11338537 -270855127 - L1MC4 LINE L1 -700 7342 7161 2087 110 0 0 chr1 11338544 11338861 -270854803 - AluSg SINE Alu 0 317 1 1212 175 8 40 chr1 11338863 11339115 -270854549 - AluJo SINE Alu -10 302 59 622 85 85 0 chr1 11339215 11339309 -270854355 - AluSp SINE Alu -210 103 2 671 241 0 14 chr1 11339359 11339500 -270854164 + AluJo SINE Alu 21 159 -153 351 0 0 0 chr1 11339502 11339541 -270854123 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 2123 52 48 0 chr1 11339542 11339837 -270853827 + AluY SINE Alu 1 308 0 2137 87 30 3 chr1 11339871 11340170 -270853494 - AluSq SINE Alu -4 309 3 2106 119 0 0 chr1 11340308 11340602 -270853062 + AluSx SINE Alu 1 294 -18 305 264 28 0 chr1 11341018 11341090 -270852574 + MIR SINE MIR 79 152 -110 1689 179 0 3 chr1 11341103 11341400 -270852264 + AluJo SINE Alu 2 297 -15 2416 58 0 3 chr1 11341553 11341865 -270851799 + AluY SINE Alu 1 311 0 1562 108 84 0 chr1 11341890 11342140 -270851524 + AluSx SINE Alu 34 304 -8 204 40 0 0 chr1 11342140 11342165 -270851499 + (GA)n Simple_repeat Simple_repeat 1 25 0 299 132 66 0 chr1 11342183 11342259 -270851405 + GA-rich Low_complexity Low_complexity 1 81 0 1722 98 81 28 chr1 11342271 11342556 -270851108 + AluSx SINE Alu 11 310 -2 194 260 0 40 chr1 11342632 11342682 -270850982 + MIR SINE MIR 45 92 -170 1018 110 0 7 chr1 11342704 11342858 -270850806 - AluSg/x SINE Alu -32 278 126 497 241 109 7 chr1 11342859 11342996 -270850668 + MIR SINE MIR 85 235 -27 181 29 29 57 chr1 11343147 11343182 -270850482 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 249 255 0 0 chr1 11344333 11344384 -270849280 + L2 LINE L2 3221 3271 -1 2058 121 10 0 chr1 11345525 11345831 -270847833 + AluSq SINE Alu 1 309 -4 1028 117 7 0 chr1 11345833 11345987 -270847677 + AluSc SINE Alu 139 293 -16 1948 128 7 0 chr1 11346072 11346360 -270847304 + AluSx SINE Alu 1 290 -22 1140 108 0 0 chr1 11346392 11346550 -270847114 + AluSg/x SINE Alu 137 294 -18 1191 109 10 10 chr1 11346602 11346778 -270846886 - AluSg/x SINE Alu 0 309 131 2079 91 0 14 chr1 11346778 11347107 -270846557 - AluSg SINE Alu 0 310 1 1191 109 10 10 chr1 11347107 11347122 -270846542 - AluSg/x SINE Alu -177 132 118 739 169 70 58 chr1 11347140 11347312 -270846352 - FAM SINE Alu 0 175 2 420 183 154 19 chr1 11347949 11348053 -270845611 - FLAM_C SINE Alu -15 118 1 2068 96 17 3 chr1 11348067 11348369 -270845295 - AluSq SINE Alu -7 306 1 629 165 0 9 chr1 11348642 11348746 -270844918 + AluJo/FLAM SINE Alu 9 112 -196 2408 72 0 0 chr1 11348746 11349050 -270844614 - AluY SINE Alu -7 304 1 1812 145 3 10 chr1 11349054 11349357 -270844307 - AluJo SINE Alu -11 301 1 1416 177 110 49 chr1 11350180 11350440 -270843224 + MER7A DNA MER2_type 1 244 -2794 2194 99 0 0 chr1 11350440 11350734 -270842930 - AluY SINE Alu -17 294 1 2077 106 17 0 chr1 11350735 11351028 -270842636 - AluSq SINE Alu -15 298 1 1416 177 110 49 chr1 11351028 11351093 -270842571 + MER7A DNA MER2_type 243 346 0 1958 104 7 30 chr1 11351495 11351792 -270841872 + AluSc SINE Alu 1 290 -19 2161 100 0 7 chr1 11352009 11352309 -270841355 - AluSq SINE Alu -15 298 1 880 114 0 8 chr1 11352312 11352443 -270841221 - AluSq/x SINE Alu -180 133 4 1384 145 9 109 chr1 11352454 11352785 -270840879 - AluJo SINE Alu -14 298 1 346 192 0 26 chr1 11357008 11357086 -270836578 - L1ME LINE L1 -468 5653 5578 2019 105 25 0 chr1 11358810 11359096 -270834568 + AluSq SINE Alu 1 293 -20 2117 93 0 0 chr1 11359570 11359850 -270833814 - AluY SINE Alu 0 311 32 2361 73 0 25 chr1 11359852 11360168 -270833496 - AluY SINE Alu -3 308 1 607 77 0 0 chr1 11360196 11360274 -270833390 + AluSc SINE Alu 208 285 -24 1877 105 73 0 chr1 11360503 11360789 -270832875 - AluSp SINE Alu -6 307 1 885 157 25 6 chr1 11361820 11361979 -270831685 + AluJo SINE Alu 33 194 -118 2347 59 0 20 chr1 11362110 11362415 -270831249 + AluY SINE Alu 1 299 -12 1430 154 81 0 chr1 11362517 11362789 -270830875 + AluJb SINE Alu 1 294 -18 860 178 29 23 chr1 11362909 11363083 -270830581 + AluJo SINE Alu 86 260 -52 1968 122 10 0 chr1 11363198 11363493 -270830171 + AluSx SINE Alu 1 298 -14 2118 112 0 0 chr1 11363495 11363791 -270829873 + AluSx SINE Alu 1 296 -16 266 140 53 0 chr1 11363851 11363908 -270829756 + L1ME4a LINE L1 6059 6118 -3 2347 78 3 0 chr1 11363915 11364223 -270829441 + AluSp SINE Alu 1 309 -4 1918 148 3 3 chr1 11364231 11364536 -270829128 + AluSx SINE Alu 1 305 -7 1740 98 8 8 chr1 11364551 11364795 -270828869 + AluSx SINE Alu 35 278 -34 360 0 0 0 chr1 11364795 11364835 -270828829 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 11364834 11364855 -270828809 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 1722 128 4 18 chr1 11364858 11365131 -270828533 + AluSx SINE Alu 35 303 -9 2023 139 0 3 chr1 11365286 11365596 -270828068 + AluJb SINE Alu 3 311 -1 1887 129 0 11 chr1 11366110 11366397 -270827267 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr1 11366397 11366426 -270827238 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2086 122 3 3 chr1 11366481 11366785 -270826879 + AluJb SINE Alu 1 304 -8 2848 6 0 0 chr1 11367092 11367409 -270826255 + AluYb8 SINE Alu 2 318 0 1463 134 20 108 chr1 11367913 11368257 -270825407 - AluYb8 SINE Alu -4 314 1 469 218 205 51 chr1 11369058 11369214 -270824450 + MIR SINE MIR 48 227 -35 214 291 39 10 chr1 11369630 11369733 -270823931 + L3 LINE CR1 1250 1355 -222 371 282 76 86 chr1 11369866 11370157 -270823507 + L2 LINE L2 2924 3211 -61 671 158 7 0 chr1 11370169 11370315 -270823349 + (TGGA)n Simple_repeat Simple_repeat 2 148 0 856 150 6 6 chr1 11370368 11370548 -270823116 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 741 333 0 8 chr1 11370570 11371105 -270822559 + (TGGA)n Simple_repeat Simple_repeat 1 530 0 357 131 0 0 chr1 11371129 11371190 -270822474 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 766 195 2 7 chr1 11371213 11371625 -270822039 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 482 239 4 4 chr1 11371650 11371885 -270821779 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 186 263 18 0 chr1 11373786 11373843 -270819821 + MIR SINE MIR 91 148 -60 183 280 80 0 chr1 11374947 11375022 -270818642 - MIR SINE MIR -149 113 33 295 292 32 20 chr1 11375045 11375164 -270818500 - MIR SINE MIR -84 124 1 2099 120 0 0 chr1 11375194 11375495 -270818169 - AluSx SINE Alu -11 301 1 1750 145 25 0 chr1 11376634 11376917 -270816747 - AluSx SINE Alu -22 290 1 330 241 69 48 chr1 11376967 11377002 -270816662 - HAL1 LINE L1 -2265 242 209 2272 109 0 0 chr1 11377002 11377306 -270816358 + AluSg SINE Alu 1 304 -6 330 241 69 48 chr1 11377306 11377415 -270816249 - HAL1 LINE L1 -2298 209 95 833 136 0 8 chr1 11377438 11377570 -270816094 - FLAM_C SINE Alu -2 141 11 1729 73 5 0 chr1 11377571 11377791 -270815873 - AluSp SINE Alu -92 221 1 1534 188 0 34 chr1 11377817 11378115 -270815549 + AluJo SINE Alu 1 288 -24 323 269 75 45 chr1 11378133 11378334 -270815330 + HAL1 LINE L1 1288 1494 -1013 1358 106 45 0 chr1 11378343 11378542 -270815122 + AluSg/x SINE Alu 100 307 -3 2009 108 7 0 chr1 11378543 11378820 -270814844 - AluSg SINE Alu -31 279 1 201 147 0 0 chr1 11378833 11378867 -270814797 + (A)n Simple_repeat Simple_repeat 1 34 0 620 272 152 18 chr1 11378892 11378910 -270814754 - LTR8 LTR ERV1 -445 246 232 2363 55 7 0 chr1 11378910 11379200 -270814464 + AluY SINE Alu 1 292 -19 620 272 152 18 chr1 11379200 11379398 -270814266 - LTR8 LTR ERV1 -459 232 1 514 269 66 5 chr1 11379457 11379654 -270814010 + HAL1 LINE L1 1886 2094 -413 300 119 0 0 chr1 11379655 11379697 -270813967 + Alu SINE Alu 1 42 -261 1727 73 17 0 chr1 11379700 11379932 -270813732 - AluSp SINE Alu -8 305 70 529 90 26 0 chr1 11379936 11380014 -270813650 + AluS SINE Alu 14 93 -220 1609 89 0 0 chr1 11380035 11380249 -270813415 - AluSq SINE Alu -95 218 5 554 131 0 0 chr1 11380289 11380373 -270813291 - LTR26E LTR ERV1 -497 125 42 204 219 0 0 chr1 11380376 11380417 -270813247 + T-rich Low_complexity Low_complexity 3 43 0 1887 129 23 20 chr1 11380423 11380516 -270813148 - AluSx SINE Alu -1 311 220 5279 77 25 9 chr1 11380516 11381196 -270812468 - LTR8 LTR ERV1 0 691 1 1887 129 23 20 chr1 11381196 11381404 -270812260 - AluSx SINE Alu -92 220 9 333 247 75 34 chr1 11381436 11381582 -270812082 - MER21B LTR ERV1 -614 249 98 1778 101 73 31 chr1 11384303 11384591 -270809073 - AluSx SINE Alu -12 300 1 2308 71 0 3 chr1 11384600 11384896 -270808768 - AluY SINE Alu -15 296 2 189 107 0 0 chr1 11385142 11385170 -270808494 + (CCCCG)n Simple_repeat Simple_repeat 2 29 0 213 143 0 24 chr1 11385340 11385382 -270808282 - MIR SINE MIR -175 87 47 1507 160 78 3 chr1 11386057 11386339 -270807325 - AluJo SINE Alu -9 303 1 1158 126 248 4 chr1 11386506 11386744 -270806920 - AluY SINE Alu -5 296 1 479 310 53 50 chr1 11386763 11386958 -270806706 + L2 LINE L2 2942 3140 -132 2105 125 0 0 chr1 11386958 11387261 -270806403 - AluSx SINE Alu -9 303 1 479 310 53 50 chr1 11387261 11387388 -270806276 + L2 LINE L2 3140 3265 -7 2244 92 3 3 chr1 11387461 11387766 -270805898 + AluSp SINE Alu 1 305 -8 47 78 0 0 chr1 11389081 11389184 -270804480 + GC_rich Low_complexity Low_complexity 1 103 0 30 45 0 0 chr1 11389229 11389273 -270804391 + GC_rich Low_complexity Low_complexity 1 44 0 192 75 38 57 chr1 11389400 11389453 -270804211 + (CCGGG)n Simple_repeat Simple_repeat 3 54 0 2135 82 0 26 chr1 11390357 11390660 -270803004 + AluSc SINE Alu 3 297 -12 836 134 16 0 chr1 11390670 11390797 -270802867 + FLAM_C SINE Alu 2 130 -3 219 333 48 24 chr1 11390977 11391061 -270802603 + L2 LINE L2 3103 3188 -84 2097 132 3 0 chr1 11391654 11391965 -270801699 + AluSx SINE Alu 1 312 0 227 53 0 26 chr1 11391982 11392020 -270801644 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2029 126 0 0 chr1 11392856 11393178 -270800486 + AluSx SINE Alu 1 322 0 2097 92 44 3 chr1 11393449 11393742 -270799922 + AluSq SINE Alu 1 305 -8 2263 87 0 19 chr1 11393754 11394064 -270799600 + AluSq SINE Alu 1 304 -9 1366 231 143 24 chr1 11394105 11394559 -270799105 + MLT1J LTR MaLR 4 511 0 597 153 8 6 chr1 11395071 11395319 -270798345 + AluJo SINE Alu 1 297 -15 2128 123 0 0 chr1 11395354 11395663 -270798001 - AluY SINE Alu -2 309 1 1944 117 0 18 chr1 11396197 11396332 -270797332 + AluSx SINE Alu 1 137 -175 2413 53 0 3 chr1 11396332 11396635 -270797029 + AluY SINE Alu 1 302 -9 1944 117 0 18 chr1 11396635 11396780 -270796884 + AluSx SINE Alu 137 276 -36 180 77 0 0 chr1 11396785 11396811 -270796853 + (CAAAC)n Simple_repeat Simple_repeat 2 27 0 1554 162 12 58 chr1 11399136 11399463 -270794201 + AluJo SINE Alu 1 312 0 1230 181 4 21 chr1 11399490 11399728 -270793936 + AluJo SINE Alu 73 306 -6 1122 262 154 11 chr1 11400467 11400993 -270792671 + L2 LINE L2 2375 2975 -339 497 296 95 0 chr1 11401547 11401726 -270791938 - MIR SINE MIR -21 241 46 321 215 0 0 chr1 11402199 11402278 -270791386 + L1ME3 LINE L1 6084 6162 0 2207 84 7 0 chr1 11402318 11402614 -270791050 - AluY SINE Alu -13 298 1 2128 99 41 0 chr1 11402790 11403083 -270790581 + AluSx SINE Alu 1 305 -7 2214 96 0 13 chr1 11403596 11403899 -270789765 - AluSx SINE Alu -13 299 1 452 310 57 6 chr1 11404032 11404190 -270789474 - MIR SINE MIR -79 183 18 1933 98 54 0 chr1 11404224 11404501 -270789163 - AluSx SINE Alu -20 292 1 366 333 60 25 chr1 11404622 11404823 -270788841 - L3 LINE CR1 -525 1052 845 1444 140 0 13 chr1 11404837 11405066 -270788598 + AluJb SINE Alu 87 312 0 2126 117 7 3 chr1 11405067 11405376 -270788288 + AluSq SINE Alu 2 311 -2 1018 152 19 6 chr1 11405384 11405542 -270788122 + FRAM SINE Alu 1 160 -6 2056 132 3 0 chr1 11406170 11406473 -270787191 - AluSq SINE Alu -9 304 1 261 276 118 16 chr1 11406904 11407031 -270786633 + L2 LINE L2 3174 3313 0 1497 159 40 40 chr1 11407183 11407443 -270786221 + AluJo SINE Alu 11 273 -39 2640 14 0 0 chr1 11407443 11407739 -270785925 - AluYa5 SINE Alu -15 296 1 1497 159 40 40 chr1 11407739 11407780 -270785884 + AluJo SINE Alu 272 312 0 2220 88 10 0 chr1 11408235 11408540 -270785124 + AluSx SINE Alu 5 312 0 2321 74 3 3 chr1 11408577 11408876 -270784788 - AluSx SINE Alu -13 299 1 378 0 0 0 chr1 11409746 11409788 -270783876 + (CA)n Simple_repeat Simple_repeat 2 43 0 549 287 111 0 chr1 11410702 11410883 -270782781 + MIR SINE MIR 47 247 -15 2354 72 13 0 chr1 11410983 11411287 -270782377 + AluSp SINE Alu 1 308 -5 180 0 0 0 chr1 11411510 11411530 -270782134 + (CA)n Simple_repeat Simple_repeat 1 20 0 1584 135 12 4 chr1 11412179 11412431 -270781233 - AluJb SINE Alu -58 254 1 2268 99 10 0 chr1 11412465 11412768 -270780896 + AluSp SINE Alu 1 306 -7 18264 30 7 1 chr1 11412806 11415727 -270777937 - L1PA3 LINE L1 0 6155 3225 4000 20 0 0 chr1 11415727 11416232 -270777432 + L1PA3 LINE L1 2714 3218 -2928 1515 170 29 36 chr1 11418121 11418427 -270775237 + AluJo SINE Alu 1 304 -8 2093 111 3 37 chr1 11418510 11418834 -270774830 + AluSq SINE Alu 1 313 0 1394 164 77 25 chr1 11418858 11419132 -270774532 + AluJo SINE Alu 1 288 -24 2381 86 0 0 chr1 11419177 11419480 -270774184 - AluSx SINE Alu -9 303 1 272 323 0 21 chr1 11419486 11419582 -270774082 + MIR SINE MIR 125 218 -44 816 180 0 0 chr1 11419929 11420068 -270773596 - AluJb SINE Alu -7 305 167 1905 90 3 109 chr1 11420847 11421168 -270772496 - AluSg1 SINE Alu -18 291 5 1400 165 65 62 chr1 11421290 11421399 -270772265 + MER47A DNA MER2_type 2 109 -2214 2344 105 7 0 chr1 11421399 11421695 -270771969 - AluSc SINE Alu -11 298 1 2280 122 0 3 chr1 11421698 11422001 -270771663 - AluSx SINE Alu -10 302 1 1400 165 65 62 chr1 11422001 11422227 -270771437 + MER47A DNA MER2_type 110 342 -24 21 0 0 0 chr1 11422257 11422278 -270771386 + AT_rich Low_complexity Low_complexity 1 21 0 638 287 121 48 chr1 11422410 11422765 -270770899 + L3 LINE CR1 930 1310 -267 1697 171 0 48 chr1 11422967 11423282 -270770382 + AluJo SINE Alu 2 301 -11 792 152 0 36 chr1 11423321 11423459 -270770205 - AluJo SINE Alu -178 134 2 2152 121 0 20 chr1 11423478 11423783 -270769881 - AluSq SINE Alu -14 299 1 2199 105 14 3 chr1 11423786 11424082 -270769582 - AluSx SINE Alu -13 299 1 2138 126 3 0 chr1 11424122 11424415 -270769249 + AluSq SINE Alu 11 304 -9 2579 62 0 3 chr1 11424614 11424920 -270768744 + AluY SINE Alu 1 305 -6 1778 133 8 0 chr1 11425171 11425426 -270768238 - AluSx SINE Alu -15 297 41 1454 127 10 0 chr1 11425426 11425631 -270768033 - AluSx SINE Alu -105 207 1 1912 170 0 16 chr1 11425642 11425959 -270767705 - AluJo SINE Alu 0 312 1 1994 108 70 3 chr1 11425998 11426112 -270767552 + AluSg SINE Alu 1 106 -204 2097 117 7 23 chr1 11426112 11426412 -270767252 + AluSg SINE Alu 1 295 -15 1994 108 70 3 chr1 11426412 11426584 -270767080 + AluSg SINE Alu 106 306 -4 2525 68 0 0 chr1 11426625 11426921 -270766743 + AluY SINE Alu 1 296 -15 247 293 143 43 chr1 11427432 11427572 -270766092 - L2 LINE L2 -5 3308 3155 662 267 58 26 chr1 11427590 11427781 -270765883 + MIR SINE MIR 45 241 -21 28 71 0 0 chr1 11429097 11429153 -270764511 + GC_rich Low_complexity Low_complexity 1 56 0 516 178 89 0 chr1 11429438 11429539 -270764125 - FLAM_A SINE Alu -22 120 11 792 153 127 25 chr1 11429571 11429728 -270763936 + AluJb SINE Alu 115 287 -25 2148 104 38 0 chr1 11429753 11430040 -270763624 + AluSx SINE Alu 1 298 -14 494 201 188 26 chr1 11430072 11430120 -270763544 - AluJo SINE Alu -132 180 141 2318 82 3 13 chr1 11430120 11430423 -270763241 - AluSg SINE Alu -10 300 1 1914 92 92 42 chr1 11430425 11430709 -270762955 - AluSx SINE Alu -14 298 1 494 201 188 26 chr1 11430709 11430811 -270762853 - AluJo SINE Alu -171 141 2 630 285 58 47 chr1 11430816 11431177 -270762487 + L2 LINE L2 1527 1891 -1423 424 321 88 16 chr1 11431481 11431674 -270761990 - MIR SINE MIR -27 235 29 2371 93 3 7 chr1 11431678 11431980 -270761684 - AluSg SINE Alu -9 301 1 2001 170 0 0 chr1 11432008 11432319 -270761345 + AluJb SINE Alu 1 311 -1 1081 136 212 12 chr1 11432328 11432578 -270761086 - Tigger2 DNA MER2_type -1 2717 2418 1679 178 43 4 chr1 11432588 11432869 -270760795 - AluJo SINE Alu -20 292 1 1131 98 20 0 chr1 11433274 11433427 -270760237 - AluSg/x SINE Alu -20 292 137 2182 117 7 0 chr1 11433428 11433719 -270759945 - AluSx SINE Alu -19 293 1 1569 174 0 7 chr1 11433766 11433856 -270759808 + AluJb SINE Alu 37 126 -186 7465 95 17 22 chr1 11433856 11434933 -270758731 + MER11C LTR ERVK 1 1071 0 1569 174 0 7 chr1 11434933 11435112 -270758552 + AluJb SINE Alu 126 304 -8 272 240 0 13 chr1 11435299 11435374 -270758290 - MER116 DNA Mariner -2 78 5 242 327 44 68 chr1 11435420 11435671 -270757993 + L2 LINE L2 2941 3185 -87 182 247 49 49 chr1 11436803 11436884 -270756780 - L3 LINE CR1 -908 669 589 2471 100 3 0 chr1 11437693 11438004 -270755660 + AluSx SINE Alu 1 312 0 1741 96 42 4 chr1 11438024 11438264 -270755400 + AluSq SINE Alu 51 299 -14 536 139 139 20 chr1 11439172 11439273 -270754391 + FLAM_A SINE Alu 22 134 -8 2176 104 24 0 chr1 11439669 11439956 -270753708 - AluSp SINE Alu -17 296 3 557 160 198 0 chr1 11439992 11440098 -270753566 - FLAM_C SINE Alu -16 127 1 2375 112 0 6 chr1 11440459 11440772 -270752892 + AluSx SINE Alu 1 311 -1 219 36 0 0 chr1 11441222 11441250 -270752414 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 27 49 0 0 chr1 11442828 11442869 -270750795 + AT_rich Low_complexity Low_complexity 1 41 0 1728 177 6 29 chr1 11442869 11443040 -270750624 - AluJo SINE Alu -8 304 142 2577 114 5 13 chr1 11443040 11443418 -270750246 + THE1C LTR MaLR 1 375 0 1728 177 6 29 chr1 11443418 11443557 -270750107 - AluJo SINE Alu -170 142 1 262 237 0 0 chr1 11444322 11444381 -270749283 + A-rich Low_complexity Low_complexity 1 59 0 964 226 9 22 chr1 11444814 11445040 -270748624 + MER58A DNA MER1_type 2 224 0 1975 170 17 0 chr1 11445578 11445872 -270747792 - AluJb SINE Alu -13 299 1 651 162 90 0 chr1 11445939 11446050 -270747614 - FLAM_C SINE Alu -11 122 2 2170 112 0 0 chr1 11446437 11446723 -270746941 - AluSx SINE Alu -26 286 1 241 132 26 0 chr1 11447016 11447054 -270746610 - Alu SINE Alu -264 39 1 742 185 155 22 chr1 11447069 11447301 -270746363 + MER2 DNA MER2_type 83 345 0 194 28 0 83 chr1 11447309 11447345 -270746319 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 2265 98 7 3 chr1 11448606 11448901 -270744763 - AluSc SINE Alu -13 296 1 2397 89 0 3 chr1 11448904 11449207 -270744457 - AluSg SINE Alu -7 303 2 36 53 0 0 chr1 11449608 11449665 -270743999 + AT_rich Low_complexity Low_complexity 1 57 0 931 166 72 17 chr1 11449665 11449846 -270743818 - AluJb SINE Alu -17 295 105 1502 208 10 3 chr1 11449876 11450165 -270743499 - AluJo SINE Alu -18 294 4 2386 105 0 6 chr1 11450173 11450488 -270743176 - AluSq SINE Alu 0 313 1 717 194 0 50 chr1 11450491 11450630 -270743034 - AluJo/FLAM SINE Alu -170 132 1 993 151 16 43 chr1 11450630 11450815 -270742849 - AluJo SINE Alu -20 292 113 451 291 158 65 chr1 11451303 11451701 -270741963 + LTR33 LTR ERVL 38 472 -49 2052 136 7 7 chr1 11451849 11452151 -270741513 + AluSx SINE Alu 1 302 -10 2409 104 3 0 chr1 11452162 11452469 -270741195 + AluSq SINE Alu 1 308 -5 616 192 14 55 chr1 11456267 11456413 -270737251 + MIR SINE MIR 111 250 -12 222 231 0 0 chr1 11457010 11457075 -270736589 + (TGG)n Simple_repeat Simple_repeat 2 66 0 315 216 136 0 chr1 11458364 11458452 -270735212 - L2 LINE L2 -1 3271 3172 565 254 35 56 chr1 11459985 11460182 -270733482 - MIR SINE MIR -5 257 65 1001 138 141 145 chr1 11460185 11460475 -270733189 + AluJo SINE Alu 6 294 -18 2441 80 10 0 chr1 11461954 11462255 -270731409 + AluSx SINE Alu 1 304 -8 2435 96 0 0 chr1 11462255 11462558 -270731106 + AluSx SINE Alu 1 303 -9 240 234 78 84 chr1 11462586 11462753 -270730911 - L2 LINE L2 -165 3107 2942 1162 126 248 4 chr1 11462772 11463010 -270730654 + AluY SINE Alu 1 296 -5 1606 160 78 3 chr1 11463177 11463459 -270730205 + AluJo SINE Alu 1 303 -9 222 143 0 24 chr1 11464134 11464176 -270729488 + MIR SINE MIR 47 87 -175 189 107 0 0 chr1 11464346 11464374 -270729290 + (CGGGG)n Simple_repeat Simple_repeat 2 29 0 200 242 129 0 chr1 11465204 11465266 -270728398 - MIR SINE MIR -123 139 70 183 312 26 26 chr1 11465982 11466059 -270727605 - MIR SINE MIR -59 149 73 2276 94 0 0 chr1 11467034 11467322 -270726342 - AluSg SINE Alu -22 288 1 887 144 8 0 chr1 11467324 11467456 -270726208 - AluSq/x SINE Alu -179 133 1 1707 136 136 20 chr1 11467578 11467880 -270725784 - MER1B DNA MER1_type 0 337 1 580 209 104 8 chr1 11467928 11468062 -270725602 + MIR SINE MIR 50 196 -66 1871 154 18 0 chr1 11468450 11468730 -270724934 - AluJb SINE Alu -11 301 17 2002 121 0 4 chr1 11468730 11469002 -270724662 - AluSx SINE Alu -41 271 1 21 0 0 0 chr1 11469010 11469031 -270724633 + AT_rich Low_complexity Low_complexity 1 21 0 1212 111 6 6 chr1 11469216 11469396 -270724268 + AluY SINE Alu 132 311 0 344 153 17 0 chr1 11469598 11469657 -270724007 + AluS SINE Alu 1 60 -241 2158 110 0 27 chr1 11469662 11469962 -270723702 - AluSx SINE Alu -20 292 1 926 150 72 6 chr1 11471551 11471718 -270721946 - MER5B DNA MER1_type 0 178 1 1552 118 83 55 chr1 11472744 11473033 -270720631 - AluSx SINE Alu -15 297 1 1009 104 0 0 chr1 11473033 11473168 -270720496 - AluSq/x SINE Alu -177 135 1 444 270 149 22 chr1 11476142 11476393 -270717271 + MLT1J LTR MaLR 235 458 -53 392 257 0 35 chr1 11476409 11476522 -270717142 + MER21B LTR ERV1 1 109 -754 2235 69 7 0 chr1 11476677 11476967 -270716697 + AluSg SINE Alu 1 292 -18 469 127 0 0 chr1 11477006 11477069 -270716595 - AluJb SINE Alu -193 119 57 1152 153 39 10 chr1 11477656 11477815 -270715849 + MER3 DNA MER1_type 1 169 -40 2132 135 0 0 chr1 11477815 11478127 -270715537 + AluSx SINE Alu 1 312 0 1152 153 39 10 chr1 11478127 11478170 -270715494 + MER3 DNA MER1_type 169 209 0 279 0 0 0 chr1 11478196 11478227 -270715437 + (CAA)n Simple_repeat Simple_repeat 2 32 0 671 153 0 0 chr1 11478320 11478418 -270715246 - AluJ/FLAM SINE Alu -213 99 2 32 75 0 0 chr1 11478419 11478486 -270715178 + AT_rich Low_complexity Low_complexity 1 67 0 1042 193 9 32 chr1 11478673 11478891 -270714773 + AluJo SINE Alu 85 297 -15 1058 177 0 10 chr1 11478891 11479083 -270714581 + AluJo SINE Alu 1 190 -122 410 256 38 23 chr1 11479201 11479334 -270714330 + L1MC4a LINE L1 5765 5899 -1909 310 265 137 20 chr1 11479368 11479470 -270714194 + MER34 LTR ERV1 1 114 -428 * 491 229 38 105 chr1 11479445 11479655 -270714009 + MER39 LTR ERV1 250 445 -262 474 308 104 46 chr1 11479662 11479922 -270713742 + L2 LINE L2 2997 3271 -1 2485 51 0 19 chr1 11480008 11480323 -270713341 - AluY SINE Alu -2 309 1 872 164 25 6 chr1 11480454 11480613 -270713051 - AluJo SINE Alu -118 194 33 2125 101 3 0 chr1 11481054 11481378 -270712286 - AluSp SINE Alu 0 325 1 865 281 14 0 chr1 11481502 11481719 -270711945 + MIR SINE MIR 29 248 -14 25448 75 4 7 chr1 11481781 11485042 -270708622 + L1P LINE L1 4 3258 -2888 2274 68 31 0 chr1 11485042 11485334 -270708330 + AluY SINE Alu 1 301 -10 25448 75 4 7 chr1 11485334 11485447 -270708217 + L1P LINE L1 3258 3370 -2776 405 52 35 0 chr1 11485575 11485633 -270708031 + AluSc SINE Alu 236 295 -14 1855 152 24 0 chr1 11486210 11486500 -270707164 + AluJo SINE Alu 1 297 -15 442 147 0 13 chr1 11487125 11487200 -270706464 - HsTC2 DNA Tc2 -1824 74 1 316 226 145 8 chr1 11488365 11488489 -270705175 + L1ME4a LINE L1 5803 5943 -178 1084 53 0 0 chr1 11488863 11488995 -270704669 + AluSg/x SINE Alu 160 291 -18 801 165 0 0 chr1 11489029 11489150 -270704514 - AluJb SINE Alu -190 122 2 463 242 40 0 chr1 11489350 11489449 -270704215 + MER21B LTR ERV1 140 242 -621 1883 201 106 26 chr1 11489476 11489938 -270703726 + MER21B LTR ERV1 329 827 -36 967 175 44 11 chr1 11491573 11491756 -270701908 - MER5A DNA MER1_type 0 189 1 191 309 55 45 chr1 11491758 11491868 -270701796 + L3 LINE CR1 1455 1565 -12 531 47 16 0 chr1 11492435 11492499 -270701165 + U6 snRNA snRNA 1 65 -42 305 268 0 0 chr1 11493121 11493201 -270700463 + MIR3 SINE MIR 100 180 -28 975 142 27 0 chr1 11493713 11493861 -270699803 + MER3 DNA MER1_type 1 152 -57 2050 146 0 0 chr1 11493872 11494181 -270699483 + AluSx SINE Alu 1 309 -3 1745 108 12 0 chr1 11494183 11494456 -270699208 + AluY SINE Alu 32 307 0 2016 108 24 0 chr1 11494929 11495217 -270698447 - AluSq SINE Alu -18 295 1 275 221 13 26 chr1 11496984 11497061 -270696603 + L1ME LINE L1 5578 5653 -468 7485 39 3 1 chr1 11497218 11498522 -270695142 + L1PA5 LINE L1 4850 6154 0 1717 86 4 4 chr1 11499051 11499285 -270694379 + AluY SINE Alu 1 234 -77 989 184 0 0 chr1 11499504 11499678 -270693986 + AluSg/x SINE Alu 136 309 -3 253 215 92 0 chr1 11499679 11499744 -270693920 + MIR3 SINE MIR 137 207 -1 374 351 31 51 chr1 11499906 11500062 -270693602 - L2 LINE L2 -5 3308 3159 2181 97 3 3 chr1 11500062 11500361 -270693303 + AluSp SINE Alu 1 299 -14 374 351 31 51 chr1 11500361 11500497 -270693167 - L2 LINE L2 -154 3159 3022 239 356 44 0 chr1 11500535 11500625 -270693039 - MIR SINE MIR -2 260 167 2468 259 75 50 chr1 11500625 11501426 -270692238 - L1ME3A LINE L1 -13 6157 5297 825 181 0 0 chr1 11501426 11501559 -270692105 - FLAM_A SINE Alu 0 133 1 2468 259 75 50 chr1 11501559 11501925 -270691739 - L1ME3A LINE L1 -873 5297 4942 546 295 63 0 chr1 11502094 11502284 -270691380 - L1ME3A LINE L1 -1287 4859 4658 461 274 78 34 chr1 11502284 11502463 -270691201 - MIR SINE MIR -73 189 3 1508 186 13 10 chr1 11502579 11502886 -270690778 + AluJo SINE Alu 1 308 -4 201 330 175 19 chr1 11503020 11503226 -270690438 + L2 LINE L2 2815 3052 -220 1440 143 13 101 chr1 11503421 11503728 -270689936 + AluJb SINE Alu 1 280 -32 231 36 0 0 chr1 11503728 11503756 -270689908 + (CAAAA)n Simple_repeat Simple_repeat 5 32 0 2132 101 0 7 chr1 11503927 11504233 -270689431 + AluY SINE Alu 1 304 -7 2324 122 0 48 chr1 11505383 11505737 -270687927 - MER1B DNA MER1_type 0 337 1 188 273 22 29 chr1 11508636 11508704 -270684960 - MIR SINE MIR -105 103 51 1943 123 43 7 chr1 11510931 11511232 -270682432 + AluSx SINE Alu 1 312 0 1751 131 28 17 chr1 11511490 11511781 -270681883 + AluSq SINE Alu 3 296 -17 325 284 53 11 chr1 11512287 11512382 -270681282 + MER91B DNA MER1_type 37 135 -55 2242 98 3 0 chr1 11515030 11515336 -270678328 + AluSc SINE Alu 1 307 -2 213 39 0 0 chr1 11515983 11516009 -270677655 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2019 121 7 3 chr1 11516010 11516300 -270677364 - AluSx SINE Alu -21 291 1 604 173 181 0 chr1 11518309 11518442 -270675222 + MER3 DNA MER1_type 53 209 0 243 211 19 0 chr1 11518401 11518453 -270675211 - MER3 DNA MER1_type -121 88 36 * 2339 77 0 0 chr1 11519191 11519488 -270674176 + AluY SINE Alu 1 297 -14 505 221 9 9 chr1 11519523 11519636 -270674028 + FLAM_A SINE Alu 19 131 -11 263 231 143 14 chr1 11520033 11520180 -270673484 - L1ME4a LINE L1 0 6121 5956 1571 191 7 3 chr1 11520275 11520563 -270673101 - AluJo SINE Alu -23 289 1 2084 105 27 0 chr1 11520605 11520899 -270672765 + AluY SINE Alu 1 302 -9 941 120 12 32 chr1 11520931 11521094 -270672570 + L1PB4 LINE L1 6010 6163 -3 22 0 0 0 chr1 11521073 11521095 -270672569 + AT_rich Low_complexity Low_complexity 1 22 0 * 1789 149 35 3 chr1 11521096 11521385 -270672279 + AluJb SINE Alu 9 306 -6 2389 99 0 0 chr1 11521388 11521700 -270671964 + AluSx SINE Alu 1 312 0 680 130 36 29 chr1 11521713 11521851 -270671813 + L1MA4 LINE L1 6159 6297 -3 1906 131 25 0 chr1 11521861 11522143 -270671521 + AluSx SINE Alu 12 300 -12 2075 210 78 45 chr1 11522146 11522707 -270670957 + MLT1G1 LTR MaLR 3 582 -13 746 233 85 5 chr1 11523772 11523995 -270669669 + MIR SINE MIR 1 241 -21 302 202 46 92 chr1 11524007 11524116 -270669548 + MIR SINE MIR 31 134 -128 1004 242 43 19 chr1 11524793 11525049 -270668615 + MIR SINE MIR 1 262 0 1906 160 3 10 chr1 11525552 11525858 -270667806 - AluJb SINE Alu -8 304 1 1238 131 4 97 chr1 11525867 11526104 -270667560 - AluJo SINE Alu -12 300 86 740 204 7 0 chr1 11526111 11526253 -270667411 - FLAM_C SINE Alu 0 143 1 431 136 9 0 chr1 11527263 11527349 -270666315 + MER5A DNA MER1_type 6 92 -97 2149 128 0 0 chr1 11528336 11528625 -270665039 - AluSx SINE Alu -23 289 1 1545 144 113 4 chr1 11528635 11528892 -270664772 - AluJb SINE Alu -27 285 1 1305 192 12 16 chr1 11528894 11529144 -270664520 + MER58B DNA MER1_type 43 291 -50 817 260 72 8 chr1 11529485 11529735 -270663929 + L2 LINE L2 2535 2800 -514 782 214 33 28 chr1 11529736 11529840 -270663824 - MER5A DNA MER1_type -1 188 81 1632 187 7 11 chr1 11529840 11530124 -270663540 - AluJo SINE Alu -29 283 1 782 214 33 28 chr1 11530124 11530201 -270663463 - MER5A DNA MER1_type -108 81 6 696 263 214 30 chr1 11530208 11530638 -270663026 + L2 LINE L2 2804 3312 -1 328 297 55 36 chr1 11532151 11532370 -270661294 + L2 LINE L2 2837 3059 -213 1481 140 37 37 chr1 11534858 11535129 -270658535 + AluJo SINE Alu 30 300 -12 485 232 58 7 chr1 11535232 11535387 -270658277 + MIR SINE MIR 100 262 0 2249 64 0 64 chr1 11535854 11536168 -270657496 - AluY SINE Alu -17 294 1 2402 92 0 0 chr1 11536607 11536900 -270656764 + AluSg SINE Alu 1 293 -17 1843 171 3 23 chr1 11537383 11537687 -270655977 + AluJb SINE Alu 1 298 -14 1220 283 83 26 chr1 11537700 11538199 -270655465 + L1MEc LINE L1 414 946 -5259 1936 154 6 31 chr1 11538199 11538518 -270655146 + AluSx SINE Alu 1 311 -1 1220 283 83 26 chr1 11538518 11538548 -270655116 + L1MEc LINE L1 946 973 -5232 315 253 37 36 chr1 11538519 11538727 -270654937 + L1MEc LINE L1 1223 1343 -4862 * 34 0 0 0 chr1 11538827 11538861 -270654803 + AT_rich Low_complexity Low_complexity 1 34 0 1191 133 31 10 chr1 11539137 11539333 -270654331 + MLT1D LTR MaLR 304 503 -2 2213 128 0 0 chr1 11539456 11539752 -270653912 - AluSx SINE Alu -16 296 1 469 250 93 7 chr1 11539956 11540096 -270653568 + L1MC5 LINE L1 6720 6871 -1090 301 74 19 19 chr1 11540154 11540208 -270653456 + (TA)n Simple_repeat Simple_repeat 1 54 0 234 62 167 0 chr1 11540399 11540447 -270653217 - L1MC4a LINE L1 -1188 6620 6565 420 268 6 57 chr1 11540486 11540643 -270653021 + L1MC5 LINE L1 6976 7124 -837 21 26 0 26 chr1 11540643 11540658 -270653006 + AT_rich Low_complexity Low_complexity 1 15 -23 2458 71 0 3 chr1 11540658 11540954 -270652710 - AluY SINE Alu -16 295 1 21 26 0 26 chr1 11540954 11540977 -270652687 + AT_rich Low_complexity Low_complexity 15 38 0 611 162 63 27 chr1 11540977 11541088 -270652576 - FLAM_C SINE Alu -27 116 2 307 143 0 20 chr1 11541155 11541204 -270652460 + MER4E LTR ERV1 645 692 -74 309 232 4 36 chr1 11541221 11541343 -270652321 + L1MC4a LINE L1 7075 7176 -632 * 723 236 151 75 chr1 11541340 11542042 -270651622 + L1MC5 LINE L1 7244 7908 -53 1233 273 93 34 chr1 11542103 11542215 -270651449 + L1MEc LINE L1 2131 2235 -3980 2104 117 7 0 chr1 11542215 11542544 -270651120 + AluSq SINE Alu 1 331 0 1233 273 93 34 chr1 11542544 11543318 -270650346 + L1MEc LINE L1 2235 3028 -3187 1379 201 64 17 chr1 11543319 11543685 -270649979 + L1MB7 LINE L1 5801 6182 -2 234 217 87 0 chr1 11543723 11543792 -270649872 + L1MEc LINE L1 3033 3107 -3108 285 254 182 47 chr1 11543830 11543877 -270649787 + L1MEc LINE L1 3223 3262 -2953 2304 123 0 0 chr1 11543877 11544179 -270649485 - AluSx SINE Alu -10 302 1 285 254 182 47 chr1 11544179 11544406 -270649258 + L1MEc LINE L1 3262 3534 -2681 419 244 102 84 chr1 11544420 11544711 -270648953 + L1MEc LINE L1 3753 4056 -2159 708 159 0 0 chr1 11544711 11544818 -270648846 + U6 snRNA snRNA 1 107 0 419 244 102 84 chr1 11544818 11544965 -270648699 + L1MEc LINE L1 4056 4199 -2016 1518 161 63 35 chr1 11544966 11545252 -270648412 + AluJb SINE Alu 1 294 -18 222 37 0 0 chr1 11545371 11545398 -270648266 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 2408 113 0 0 chr1 11545473 11545784 -270647880 + AluSx SINE Alu 1 311 -1 247 311 36 60 chr1 11545925 11546092 -270647572 + L1MC4a LINE L1 6278 6440 -1368 1249 287 33 16 chr1 11546132 11546560 -270647104 + L1MC4 LINE L1 7090 7524 -518 2288 110 0 0 chr1 11546656 11546946 -270646718 - AluSx SINE Alu -22 290 1 1047 144 69 0 chr1 11548276 11548436 -270645228 + AluJb SINE Alu 125 295 -17 436 155 12 0 chr1 11548466 11548550 -270645114 - L1MA6 LINE L1 -216 6084 6000 1819 147 59 7 chr1 11548598 11548884 -270644780 + AluSx SINE Alu 3 303 -9 1440 196 57 4 chr1 11550193 11550473 -270643191 - AluJo SINE Alu -15 297 3 500 184 9 44 chr1 11550744 11550858 -270642806 - L2 LINE L2 -1 3312 3203 2123 123 17 0 chr1 11551050 11551352 -270642312 + AluSx SINE Alu 1 307 -5 905 216 0 0 chr1 11553788 11553955 -270639709 + AluSg/x SINE Alu 128 294 -16 2376 87 0 0 chr1 11554159 11554457 -270639207 + AluSc SINE Alu 1 298 -11 342 224 47 0 chr1 11554469 11554554 -270639110 + L2 LINE L2 3183 3271 -1 1960 155 3 10 chr1 11554587 11554896 -270638768 - AluJb SINE Alu -5 307 1 2262 86 3 10 chr1 11554967 11555268 -270638396 - AluSx SINE Alu -13 299 1 2395 68 0 39 chr1 11557221 11557531 -270636133 - AluY SINE Alu -13 298 1 21 36 0 0 chr1 11557653 11557681 -270635983 + AT_rich Low_complexity Low_complexity 1 28 0 2342 107 7 0 chr1 11558080 11558390 -270635274 + AluSx SINE Alu 1 312 0 234 292 11 22 chr1 11559259 11559348 -270634316 - MIR SINE MIR -84 178 91 478 287 56 46 chr1 11559371 11559498 -270634166 - MIR SINE MIR -10 252 121 2490 63 3 0 chr1 11559498 11559799 -270633865 + AluY SINE Alu 1 302 -9 478 287 56 46 chr1 11559799 11559866 -270633798 - MIR SINE MIR -141 121 56 720 233 39 17 chr1 11560236 11560416 -270633248 + MER91B DNA MER1_type 1 184 -6 1145 74 0 20 chr1 11560539 11560674 -270632990 + AluSq/x SINE Alu 1 134 -178 2032 141 0 6 chr1 11560674 11560986 -270632678 + AluSx SINE Alu 1 310 -2 1145 74 0 20 chr1 11560986 11560998 -270632666 + AluSq/x SINE Alu 134 145 -167 1892 129 26 23 chr1 11561867 11562169 -270631495 + AluJo SINE Alu 1 303 -9 674 191 66 0 chr1 11562335 11562471 -270631193 + FRAM SINE Alu 1 145 -31 2217 109 3 10 chr1 11562471 11562774 -270630890 + AluSp SINE Alu 4 304 -9 2152 95 11 3 chr1 11562808 11563117 -270630547 + AluSx SINE Alu 1 311 0 2142 137 23 6 chr1 11563120 11563462 -270630202 + MER7A DNA MER2_type 1 346 0 1764 156 0 36 chr1 11564074 11564375 -270629289 + AluJo SINE Alu 1 290 -22 356 298 165 0 chr1 11565367 11565555 -270628109 - MIR SINE MIR -12 250 32 2221 109 7 3 chr1 11566987 11567289 -270626375 + AluSq SINE Alu 1 303 -10 2118 102 0 4 chr1 11567401 11567675 -270625989 + AluSg SINE Alu 1 273 -37 257 0 30 0 chr1 11567865 11567898 -270625766 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6542 53 17 44 chr1 11567898 11568823 -270624841 - SVA Other Other -23 1363 464 2491 230 155 29 chr1 11568823 11570073 -270623591 + L2 LINE L2 1896 3312 -1 818 120 38 38 chr1 11570116 11570249 -270623415 - FLAM_C SINE Alu 0 133 1 209 296 0 0 chr1 11570433 11570477 -270623187 - L2 LINE L2 -19 3294 3251 1214 154 14 5 chr1 11570487 11570695 -270622969 + MER2 DNA MER2_type 2 211 -134 809 150 0 16 chr1 11570767 11570894 -270622770 - AluJb SINE Alu -187 125 1 298 277 31 0 chr1 11570894 11570959 -270622705 + MER2 DNA MER2_type 277 343 -2 416 217 38 9 chr1 11571234 11571340 -270622324 + L2 LINE L2 2519 2627 -687 879 259 185 8 chr1 11571343 11571708 -270621956 + LTR16B LTR ERVL 3 430 -34 609 313 150 7 chr1 11571723 11572248 -270621416 + L2 LINE L2 2625 3238 -75 2326 116 0 0 chr1 11572603 11572897 -270620767 - AluSx SINE Alu -18 294 1 487 250 102 13 chr1 11572902 11573061 -270620603 - MIR SINE MIR -62 146 19 262 226 0 0 chr1 11573164 11573217 -270620447 + HsTC2 DNA Tc2 3 55 -1843 2069 132 4 0 chr1 11573226 11573507 -270620157 - AluJo SINE Alu -16 296 15 2359 117 0 0 chr1 11573560 11573867 -270619797 + AluSc SINE Alu 1 307 -2 273 169 51 0 chr1 11573872 11573931 -270619733 + HsTC2 DNA Tc2 1793 1854 -44 2310 98 20 7 chr1 11574026 11574323 -270619341 + AluSx SINE Alu 1 301 -11 335 336 26 9 chr1 11574875 11574991 -270618673 + L2 LINE L2 3194 3311 -2 292 255 112 41 chr1 11575010 11575108 -270618556 - MIR SINE MIR -107 155 51 2303 89 0 80 chr1 11575711 11576049 -270617615 + AluSx SINE Alu 1 311 -1 2293 102 10 0 chr1 11576285 11576579 -270617085 + AluSq SINE Alu 1 297 -16 212 287 161 0 chr1 11576693 11576780 -270616884 + MIR SINE MIR 42 142 -66 223 234 36 135 chr1 11577233 11577344 -270616320 - L2 LINE L2 -6 3307 3208 1374 138 167 0 chr1 11578150 11578389 -270615275 + AluSx SINE Alu 33 311 -1 532 191 30 23 chr1 11578422 11578553 -270615111 + MIR SINE MIR 123 254 -8 180 111 0 0 chr1 11578553 11578580 -270615084 + (CTA)n Simple_repeat Simple_repeat 1 27 0 1203 155 79 54 chr1 11578695 11578718 -270614946 - MER33 DNA MER1_type -2261 324 303 2327 111 3 0 chr1 11578718 11579025 -270614639 + AluSq SINE Alu 1 308 -5 1203 155 79 54 chr1 11579025 11579248 -270614416 - MER33 DNA MER1_type -2282 303 66 2423 93 0 7 chr1 11579248 11579549 -270614115 - AluSx SINE Alu -13 299 1 1203 155 79 54 chr1 11579549 11579617 -270614047 - MER33 DNA MER1_type -2519 66 1 2113 45 8 34 chr1 11579678 11579945 -270613719 + AluY SINE Alu 38 297 -14 2023 92 9 66 chr1 11581646 11581944 -270611720 + AluSx SINE Alu 1 282 -30 399 41 0 0 chr1 11581944 11581993 -270611671 + (CA)n Simple_repeat Simple_repeat 2 50 0 2023 92 9 66 chr1 11581993 11582011 -270611653 + AluSx SINE Alu 282 299 -13 655 106 106 32 chr1 11582013 11582136 -270611528 + FLAM_C SINE Alu 2 133 0 372 286 66 112 chr1 11582170 11582258 -270611406 + L1ME4a LINE L1 5698 5788 -333 2250 97 0 29 chr1 11582258 11582568 -270611096 + AluSg SINE Alu 5 305 -5 372 286 66 112 chr1 11582568 11582618 -270611046 + L1ME4a LINE L1 5788 5839 -282 1768 162 17 10 chr1 11582618 11582920 -270610744 + AluJo SINE Alu 1 304 -8 372 286 66 112 chr1 11582920 11583067 -270610597 + L1ME4a LINE L1 5839 5971 -150 883 129 0 0 chr1 11583205 11583348 -270610316 + FLAM_C SINE Alu 1 143 0 189 74 0 0 chr1 11583391 11583418 -270610246 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1588 131 62 39 chr1 11583448 11583707 -270609957 + AluJb SINE Alu 30 294 -18 291 28 0 0 chr1 11583708 11583744 -270609920 + (TA)n Simple_repeat Simple_repeat 1 36 0 893 125 0 0 chr1 11583752 11583872 -270609792 - AluSg/x SINE Alu -22 288 169 2448 95 0 0 chr1 11583958 11584262 -270609402 - AluSx SINE Alu -8 304 1 2284 128 0 0 chr1 11584459 11584764 -270608900 - AluSx SINE Alu -7 305 1 631 153 8 32 chr1 11584853 11584977 -270608687 - LTR26 LTR ERV1 -2 601 481 4146 135 21 21 chr1 11584978 11585689 -270607975 - MER50 LTR ERV1 -23 711 1 2343 145 89 39 chr1 11585689 11585733 -270607931 - LTR26 LTR ERV1 -119 484 444 216 0 0 0 chr1 11585733 11585757 -270607907 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2252 111 0 0 chr1 11585759 11586048 -270607616 - AluSg SINE Alu -21 289 1 2343 145 89 39 chr1 11586048 11586423 -270607241 - LTR26 LTR ERV1 -159 444 35 2176 86 48 14 chr1 11586423 11586576 -270607088 - AluSx SINE Alu -12 300 154 1761 132 21 103 chr1 11586576 11586916 -270606748 - AluYb8 SINE Alu -6 312 1 2176 86 48 14 chr1 11586916 11587052 -270606612 - AluSx SINE Alu -158 154 1 2343 145 89 39 chr1 11587052 11587089 -270606575 - LTR26 LTR ERV1 -568 35 1 1010 248 81 26 chr1 11587091 11587401 -270606263 - L1MC4a LINE L1 -1959 5849 5523 1730 61 0 0 chr1 11587542 11587770 -270605894 - L1PA6 LINE L1 0 6154 5927 225 222 0 0 chr1 11587800 11587845 -270605819 - MIR SINE MIR 0 262 218 334 263 31 81 chr1 11587925 11588041 -270605623 + MIR SINE MIR 111 218 -44 2162 109 35 0 chr1 11588041 11588326 -270605338 + AluSx SINE Alu 1 295 -17 334 263 31 81 chr1 11588326 11588369 -270605295 + MIR SINE MIR 218 262 0 276 292 158 0 chr1 11588367 11588487 -270605177 - MIR SINE MIR -75 187 49 * 279 120 8 265 chr1 11588645 11588689 -270604975 + MER45 DNA AcHobo 92 146 -1435 2414 78 3 22 chr1 11588689 11589008 -270604656 - AluSp SINE Alu 0 313 1 279 120 8 265 chr1 11589008 11589028 -270604636 + MER45 DNA AcHobo 146 169 -1412 1604 176 40 50 chr1 11589028 11589203 -270604461 - AluJb SINE Alu -13 299 127 2443 84 3 3 chr1 11589203 11589511 -270604153 - AluY SINE Alu -3 308 1 1604 176 40 50 chr1 11589511 11589637 -270604027 - AluJb SINE Alu -185 127 1 582 182 66 0 chr1 11589637 11589712 -270603952 - FLAM_A SINE Alu -173 129 42 2431 66 0 3 chr1 11589712 11590000 -270603664 + AluY SINE Alu 2 288 -23 582 182 66 0 chr1 11590000 11590045 -270603619 - FLAM_A SINE Alu -260 42 1 279 120 8 265 chr1 11590045 11590095 -270603569 + MER45 DNA AcHobo 167 1581 0 * 1393 190 88 16 chr1 11590095 11590456 -270603208 + MER63C DNA MER1_type 56 442 -488 1334 108 0 0 chr1 11590464 11590640 -270603024 - AluSg/x SINE Alu -3 307 132 2381 92 0 0 chr1 11590640 11590934 -270602730 - AluSx SINE Alu -14 298 5 952 183 105 9 chr1 11590938 11591157 -270602507 + MER63C DNA MER1_type 467 706 -224 268 139 0 0 chr1 11591167 11591210 -270602454 + L2 LINE L2 3230 3272 0 230 144 0 83 chr1 11591408 11591540 -270602124 + (CCCCG)n Simple_repeat Simple_repeat 2 122 0 280 250 30 0 chr1 11591549 11591649 -270602015 + C-rich Low_complexity Low_complexity 1 103 0 2413 82 0 3 chr1 11592744 11593050 -270600614 - AluSc SINE Alu 0 309 5 2349 112 0 0 chr1 11593060 11593365 -270600299 - AluSg SINE Alu -5 305 1 1663 235 85 53 chr1 11593550 11593678 -270599986 - L2 LINE L2 -18 3295 3173 417 212 34 76 chr1 11593678 11593796 -270599868 + MER81 DNA DNA 1 113 -1 1663 235 85 53 chr1 11593796 11593916 -270599748 - L2 LINE L2 -140 3173 3058 1811 135 17 24 chr1 11593916 11594205 -270599459 + AluJo SINE Alu 1 287 -25 1663 235 85 53 chr1 11594205 11594788 -270598876 - L2 LINE L2 -255 3058 2445 2268 124 0 0 chr1 11594839 11595137 -270598527 + AluSx SINE Alu 1 298 -14 2138 140 20 0 chr1 11595413 11595713 -270597951 + AluSx SINE Alu 2 307 -5 1791 114 82 18 chr1 11595751 11596031 -270597633 - AluSx SINE Alu -14 298 1 2233 107 13 0 chr1 11596102 11596401 -270597263 - AluSp SINE Alu -10 303 1 2127 152 0 3 chr1 11596405 11596715 -270596949 - AluSx SINE Alu -3 309 1 2121 137 0 3 chr1 11597322 11597621 -270596043 - AluSg SINE Alu -12 298 1 1174 230 102 49 chr1 11597746 11597872 -270595792 - L2 LINE L2 -849 2465 2347 2253 103 27 0 chr1 11597872 11598173 -270595491 - AluSx SINE Alu -3 309 1 1174 230 102 49 chr1 11598173 11598498 -270595166 - L2 LINE L2 -967 2347 1990 186 291 5 108 chr1 11598532 11598745 -270594919 - L2 LINE L2 -254 3059 2869 2532 243 85 35 chr1 11598815 11599948 -270593716 + L2 LINE L2 2127 3310 -3 234 245 0 0 chr1 11599943 11599996 -270593668 - L2 LINE L2 -554 2760 2708 * 424 232 42 65 chr1 11599999 11600019 -270593645 - L1MA10 LINE L1 -1 6333 6314 2800 158 66 58 chr1 11600019 11600284 -270593380 - L1ME2 LINE L1 -9 6155 5894 189 0 0 0 chr1 11600284 11600305 -270593359 + (TATG)n Simple_repeat Simple_repeat 4 24 0 2800 158 66 58 chr1 11600305 11600765 -270592899 - L1ME2 LINE L1 -270 5894 5433 2224 94 7 23 chr1 11601016 11601323 -270592341 - AluSp SINE Alu -11 302 1 2408 88 0 3 chr1 11601323 11601619 -270592045 - AluSp SINE Alu -18 295 1 419 346 35 35 chr1 11602473 11602730 -270590934 - L2 LINE L2 -43 3229 2973 2141 132 3 0 chr1 11602913 11603217 -270590447 - AluSx SINE Alu -3 309 5 284 239 91 114 chr1 11603226 11603490 -270590174 - L2 LINE L2 -601 2713 2456 2578 66 0 0 chr1 11606106 11606410 -270587254 + AluY SINE Alu 2 305 -6 2084 146 0 13 chr1 11607083 11607392 -270586272 + AluJo SINE Alu 1 305 -7 763 307 96 56 chr1 11607407 11607957 -270585707 + L3 LINE CR1 319 890 -687 1561 144 26 100 chr1 11608013 11608215 -270585449 - AluYb8 SINE Alu -3 315 146 2111 103 0 4 chr1 11608215 11608486 -270585178 - AluSg SINE Alu -39 271 2 1561 144 26 100 chr1 11608486 11608623 -270585041 - AluYb8 SINE Alu -172 146 1 2023 120 58 3 chr1 11609154 11609445 -270584219 + AluSx SINE Alu 1 307 -5 198 310 58 23 chr1 11609518 11609605 -270584059 + L3 LINE CR1 949 1038 -539 312 294 119 8 chr1 11609683 11609783 -270583881 + L3 LINE CR1 380 498 -1079 2253 125 3 0 chr1 11609783 11610087 -270583577 + AluSx SINE Alu 1 305 -7 312 294 119 8 chr1 11610087 11610112 -270583552 + L3 LINE CR1 498 519 -1058 636 249 32 125 chr1 11610311 11610448 -270583216 + L3 LINE CR1 1264 1412 -165 2406 105 0 3 chr1 11610448 11610762 -270582902 - AluSq SINE Alu 0 313 1 636 249 32 125 chr1 11610762 11610969 -270582695 + L3 LINE CR1 1412 1576 -1 408 20 0 0 chr1 11611126 11611175 -270582489 + (CA)n Simple_repeat Simple_repeat 2 50 0 343 216 59 29 chr1 11611895 11611997 -270581667 + L2 LINE L2 3168 3272 0 2278 114 10 0 chr1 11612131 11612430 -270581234 - AluSq SINE Alu -11 302 1 183 227 0 0 chr1 11612473 11612517 -270581147 + L2 LINE L2 3267 3310 -3 716 278 44 10 chr1 11612531 11612736 -270580928 - MIR SINE MIR 0 262 51 697 171 20 48 chr1 11612756 11612902 -270580762 - FLAM_C SINE Alu 0 143 2 351 298 57 8 chr1 11614573 11614697 -270578967 - L2 LINE L2 -19 3294 3165 607 307 33 21 chr1 11614730 11614971 -270578693 + MIR SINE MIR 13 256 -6 2022 144 0 3 chr1 11614986 11615277 -270578387 - AluJb SINE Alu -22 290 1 203 262 0 49 chr1 11615378 11615439 -270578225 + L2 LINE L2 3246 3303 -10 * 442 286 43 0 chr1 11615411 11615551 -270578113 - L2 LINE L2 0 3313 3168 1733 148 41 71 chr1 11615571 11615935 -270577729 + MLT1A1 LTR MaLR 1 353 -12 2262 112 10 0 chr1 11616407 11616711 -270576953 - AluSq SINE Alu -2 311 5 2090 141 3 0 chr1 11616743 11617066 -270576598 + AluSx SINE Alu 1 324 0 2408 98 7 0 chr1 11618256 11618553 -270575111 - AluSx SINE Alu -13 299 1 260 132 0 0 chr1 11618553 11618591 -270575073 - AluJo/FLAM SINE Alu -175 127 90 271 185 19 0 chr1 11618595 11618649 -270575015 - LTR37A LTR ERV1 -354 72 18 2334 95 3 0 chr1 11618669 11618963 -270574701 - AluSx SINE Alu -17 295 1 2149 124 0 19 chr1 11618972 11619287 -270574377 - AluJb SINE Alu -1 311 3 2496 45 3 32 chr1 11619497 11619811 -270573853 - AluY SINE Alu -6 305 1 357 209 10 177 chr1 11619812 11620019 -270573645 - MIR SINE MIR -61 147 8 1349 124 60 5 chr1 11620817 11621018 -270572646 - AluJo SINE Alu -13 299 88 2238 126 0 0 chr1 11621480 11621782 -270571882 - AluSx SINE Alu -10 302 1 1762 154 19 26 chr1 11621934 11622245 -270571419 - AluJo SINE Alu -1 311 3 518 234 36 7 chr1 11622543 11622680 -270570984 - MLT1H LTR MaLR 0 549 409 2340 83 0 3 chr1 11622803 11623105 -270570559 - AluY SINE Alu -9 302 2 9768 43 14 115 chr1 11623537 11625070 -270568594 - SVA Other Other -8 1378 1 424 185 25 25 chr1 11625611 11625773 -270567891 + L1ME3A LINE L1 5942 6165 -5 2192 105 0 19 chr1 11626116 11626429 -270567235 + AluSx SINE Alu 1 307 -5 678 265 32 45 chr1 11626656 11627103 -270566561 + MLT1H LTR MaLR 29 549 0 2559 103 27 11 chr1 11628017 11628386 -270565278 + THE1C LTR MaLR 1 375 0 733 163 257 86 chr1 11628416 11628820 -270564844 + MLT1F LTR MaLR 3 511 -31 197 291 47 79 chr1 11628953 11629231 -270564433 + L2 LINE L2 2826 3094 -178 1859 167 0 3 chr1 11629650 11629950 -270563714 - AluJb SINE Alu -8 304 6 251 317 10 30 chr1 11630433 11630534 -270563130 - MIR SINE MIR -87 121 23 536 149 252 19 chr1 11631245 11631417 -270562247 - MLT1F LTR MaLR -23 567 308 295 202 0 147 chr1 11631450 11631510 -270562154 - MLT1F LTR MaLR -342 225 186 1974 121 10 20 chr1 11631510 11631815 -270561849 - AluJo SINE Alu -10 302 1 295 202 0 147 chr1 11631815 11631863 -270561801 - MLT1F LTR MaLR -381 186 133 854 262 83 4 chr1 11632200 11632429 -270561235 - MIR SINE MIR -11 251 5 673 188 0 23 chr1 11632671 11632707 -270560957 - L1MB3 LINE L1 -7 6176 6141 2393 97 0 0 chr1 11632707 11633018 -270560646 - AluSx SINE Alu -1 311 1 673 188 0 23 chr1 11633018 11633114 -270560550 - L1MB3 LINE L1 -42 6141 6047 180 0 0 0 chr1 11633803 11633823 -270559841 + (CAG)n Simple_repeat Simple_repeat 1 20 0 2487 78 0 0 chr1 11633853 11634162 -270559502 + AluSx SINE Alu 1 309 -3 299 192 13 90 chr1 11634340 11634418 -270559246 - MIR SINE MIR -58 150 86 248 216 118 59 chr1 11634735 11634837 -270558827 - MIR SINE MIR -63 145 38 1824 173 0 16 chr1 11635548 11635861 -270557803 - AluJo SINE Alu 0 312 5 2145 103 0 0 chr1 11635878 11636183 -270557481 - AluSx SINE Alu 0 305 1 294 229 43 0 chr1 11636183 11636253 -270557411 - MIR SINE MIR -70 192 120 793 278 39 0 chr1 11636314 11636519 -270557145 - MIR SINE MIR -25 237 25 332 273 64 35 chr1 11636673 11636786 -270556878 - MLT1K LTR MaLR -4 584 463 2320 55 24 0 chr1 11636786 11637076 -270556588 - AluY SINE Alu -14 297 1 332 273 64 35 chr1 11637076 11637134 -270556530 - MLT1K LTR MaLR -125 463 408 482 257 24 129 chr1 11637178 11637388 -270556276 + MER91A DNA MER1_type 9 196 0 214 175 0 0 chr1 11637517 11637557 -270556107 - L2 LINE L2 -90 3223 3184 243 320 10 29 chr1 11637662 11637765 -270555899 - MLT1K LTR MaLR -346 242 142 371 266 158 14 chr1 11638248 11638387 -270555277 - MIR SINE MIR -5 257 99 662 284 89 91 chr1 11639190 11639358 -270554306 - L2 LINE L2 0 3313 3146 1395 177 3 101 chr1 11639358 11639686 -270553978 + AluSx SINE Alu 1 296 -16 2223 114 0 3 chr1 11639686 11639992 -270553672 + AluSx SINE Alu 1 305 -7 662 284 89 91 chr1 11639992 11640217 -270553447 - L2 LINE L2 -165 3148 2920 198 0 0 0 chr1 11640226 11640248 -270553416 + (TC)n Simple_repeat Simple_repeat 2 23 0 211 291 13 38 chr1 11640275 11640354 -270553310 - L2 LINE L2 -46 3226 3150 2371 81 3 0 chr1 11641022 11641330 -270552334 - AluY SINE Alu -2 309 1 2019 111 11 0 chr1 11641701 11641981 -270551683 - AluSx SINE Alu -29 283 1 234 326 70 0 chr1 11642642 11642728 -270550936 + MIR SINE MIR 58 149 -59 802 133 0 0 chr1 11642734 11642854 -270550810 + FRAM SINE Alu 52 171 -5 465 255 72 20 chr1 11642902 11643055 -270550609 - L2 LINE L2 -189 3083 2923 2063 128 0 19 chr1 11643949 11644261 -270549403 + AluSx SINE Alu 1 306 -6 489 301 49 0 chr1 11644686 11644849 -270548815 + MIR SINE MIR 50 220 -42 206 200 0 0 chr1 11644877 11644912 -270548752 - MIR SINE MIR -163 99 65 1109 117 0 0 chr1 11644935 11645089 -270548575 - AluSx SINE Alu -15 297 144 1189 69 0 0 chr1 11645151 11645296 -270548368 - AluSx SINE Alu -167 145 1 263 314 169 8 chr1 11645330 11645454 -270548210 + MIR SINE MIR 3 146 -116 2248 94 0 28 chr1 11646433 11646752 -270546912 - AluJb SINE Alu -2 310 1 350 239 97 8 chr1 11647916 11648050 -270545614 + L1MC2 LINE L1 6199 6344 0 2281 90 3 0 chr1 11648277 11648577 -270545087 - AluY SINE Alu -10 301 1 189 235 111 12 chr1 11649110 11649191 -270544473 + MIR SINE MIR 16 104 -104 1867 99 24 41 chr1 11649194 11649487 -270544177 + AluSx SINE Alu 25 312 0 326 222 0 0 chr1 11649636 11649708 -270543956 - MIR SINE MIR -22 240 169 251 293 178 26 chr1 11649699 11649890 -270543774 + L2 LINE L2 3056 3275 -38 * 1103 286 99 40 chr1 11650393 11650589 -270543075 + L2 LINE L2 2490 2673 -640 1729 174 0 10 chr1 11650589 11650899 -270542765 + AluJo SINE Alu 1 307 -5 1103 286 99 40 chr1 11650899 11650964 -270542700 + L2 LINE L2 2673 2733 -580 2008 144 0 13 chr1 11650964 11651277 -270542387 + AluJb SINE Alu 1 309 -3 2315 80 3 3 chr1 11651279 11651579 -270542085 + AluSx SINE Alu 3 302 -10 1103 286 99 40 chr1 11651579 11652090 -270541574 + L2 LINE L2 2733 3313 0 2465 55 0 16 chr1 11652487 11652796 -270540868 + AluY SINE Alu 1 304 -7 202 232 0 18 chr1 11653069 11653125 -270540539 + GA-rich Low_complexity Low_complexity 2 56 0 420 326 128 5 chr1 11654238 11654434 -270539230 - MIR SINE MIR -8 254 35 1437 161 92 22 chr1 11654783 11655080 -270538584 + AluJo SINE Alu 1 312 0 203 306 0 42 chr1 11655168 11655240 -270538424 + MIR SINE MIR 145 213 -49 206 271 62 21 chr1 11655526 11655670 -270537994 + (TATATG)n Simple_repeat Simple_repeat 1 150 0 325 328 26 68 chr1 11655670 11655935 -270537729 - L1MCa LINE L1 -4219 2207 1954 924 142 13 0 chr1 11656482 11656709 -270536955 + CT-rich Low_complexity Low_complexity 1 230 0 399 247 0 0 chr1 11656996 11657154 -270536510 + (TG)n Simple_repeat Simple_repeat 1 158 0 2143 104 10 0 chr1 11657435 11657734 -270535930 + AluSx SINE Alu 1 302 -10 400 302 86 36 chr1 11658720 11658942 -270534722 + L3b LINE CR1 1296 1528 -55 569 288 113 0 chr1 11659040 11659217 -270534447 + MIR SINE MIR 62 258 -4 2080 116 20 0 chr1 11659218 11659511 -270534153 + AluSx SINE Alu 1 299 -13 211 274 0 0 chr1 11659524 11659575 -270534089 + MIR SINE MIR 91 141 -121 965 313 85 23 chr1 11659585 11659796 -270533868 - L2 LINE L2 0 3313 3117 1617 163 32 25 chr1 11659796 11660079 -270533585 + AluJb SINE Alu 6 290 -22 965 313 85 23 chr1 11660079 11660302 -270533362 - L2 LINE L2 -196 3117 2852 424 106 0 0 chr1 11660881 11660947 -270532717 - MER117 DNA MER1_type -53 144 79 194 152 0 22 chr1 11661463 11661509 -270532155 + GA-rich Low_complexity Low_complexity 5 49 0 208 206 0 63 chr1 11661691 11661754 -270531910 + MIR SINE MIR 86 144 -118 1907 136 3 23 chr1 11662103 11662405 -270531259 - AluSx SINE Alu -16 296 1 195 274 145 0 chr1 11662841 11662903 -270530761 - L2 LINE L2 -46 3226 3156 494 209 107 19 chr1 11662960 11663213 -270530451 - MER46C DNA MER2_type -21 317 4 783 230 0 17 chr1 11663235 11663413 -270530251 - MIR SINE MIR -38 224 50 293 322 62 62 chr1 11663554 11663731 -270529933 - L2 LINE L2 -182 3090 2914 1874 144 31 0 chr1 11664054 11664346 -270529318 - AluSx SINE Alu -11 301 1 1921 82 0 4 chr1 11665233 11665497 -270528167 - AluSg SINE Alu 0 300 38 186 231 19 19 chr1 11665864 11665916 -270527748 - MIR SINE MIR -148 114 63 761 176 14 9 chr1 11665947 11666169 -270527495 + CT-rich Low_complexity Low_complexity 1 223 0 1964 161 3 0 chr1 11666169 11666479 -270527185 - AluSx SINE Alu -1 311 1 2329 167 68 107 chr1 11666723 11666890 -270526774 - L1MD2 LINE L1 -3 6356 6184 1650 159 26 4 chr1 11666890 11667160 -270526504 + AluJb SINE Alu 2 277 -35 315 0 0 0 chr1 11667161 11667196 -270526468 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2329 167 68 107 chr1 11667196 11667707 -270525957 - L1MD2 LINE L1 -174 6185 5703 2163 120 10 0 chr1 11667986 11668295 -270525369 + AluSx SINE Alu 1 312 0 180 212 0 0 chr1 11668402 11668435 -270525229 + MIR SINE MIR 115 147 -61 1737 150 0 83 chr1 11669420 11669759 -270523905 - AluSx SINE Alu -1 311 1 606 252 79 1 chr1 11669792 11670123 -270523541 - MLT1I LTR MaLR -2 407 20 324 281 27 82 chr1 11670342 11670488 -270523176 + MIR SINE MIR 79 216 -46 487 259 38 8 chr1 11670863 11670994 -270522670 - L2 LINE L2 0 3272 3138 2295 92 0 0 chr1 11671084 11671379 -270522285 - AluSx SINE Alu -17 295 1 645 329 94 16 chr1 11671404 11671784 -270521880 + LTR16A1 LTR ERVL 82 457 0 268 296 10 0 chr1 11671892 11671990 -270521674 + MLT1L LTR MaLR 168 266 -349 1928 151 17 3 chr1 11671993 11672291 -270521373 - AluSx SINE Alu -4 308 7 416 321 79 5 chr1 11672398 11672588 -270521076 + MLT1L LTR MaLR 410 613 -2 187 43 0 0 chr1 11672600 11672623 -270521041 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1800 116 56 0 chr1 11672623 11672891 -270520773 - AluSx SINE Alu -29 283 1 2300 81 0 34 chr1 11674986 11675307 -270518357 - AluSx SINE Alu 0 312 3 2047 107 0 28 chr1 11675453 11675770 -270517894 - AluSx SINE Alu 0 309 1 214 317 50 0 chr1 11676548 11676608 -270517056 - MIR SINE MIR -90 172 110 379 333 62 37 chr1 11676653 11676896 -270516768 + MIR SINE MIR 10 258 -4 2141 119 0 0 chr1 11676898 11677193 -270516471 + AluSx SINE Alu 1 295 -17 424 279 25 126 chr1 11678124 11678450 -270515214 - L2 LINE L2 -9 3263 2971 4192 85 13 9 chr1 11678633 11679185 -270514479 - MER41A LTR ERV1 0 554 1 182 309 0 0 chr1 11679631 11679686 -270513978 + MIR SINE MIR 85 139 -69 2181 113 0 0 chr1 11679863 11680163 -270513501 - AluSq SINE Alu -13 300 1 248 219 29 139 chr1 11680625 11680710 -270512954 - MLT1I LTR MaLR -189 220 154 2053 108 3 26 chr1 11680710 11681015 -270512649 - AluSx SINE Alu -14 298 1 248 219 29 139 chr1 11681015 11681066 -270512598 - MLT1I LTR MaLR -255 154 99 183 220 0 0 chr1 11681419 11681469 -270512195 + GA-rich Low_complexity Low_complexity 1 50 0 2281 108 0 0 chr1 11681678 11681985 -270511679 - AluSx SINE Alu -5 307 1 376 324 25 34 chr1 11682064 11682268 -270511396 - LTR16C LTR ERVL -2 489 288 2228 84 7 10 chr1 11682882 11683180 -270510484 + AluSx SINE Alu 1 297 -15 2415 131 34 3 chr1 11683181 11683564 -270510100 + MSTA LTR MaLR 34 428 0 1968 132 0 0 chr1 11683618 11683898 -270509766 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr1 11683923 11683946 -270509718 + (A)n Simple_repeat Simple_repeat 1 23 0 278 233 29 68 chr1 11683947 11684050 -270509614 + MLT1K LTR MaLR 114 212 -178 355 136 15 15 chr1 11684367 11684433 -270509231 + MLT1K LTR MaLR 196 261 -327 711 197 182 23 chr1 11684958 11685053 -270508611 - MER33 DNA MER1_type -2263 322 243 1677 173 14 0 chr1 11685053 11685342 -270508322 - AluSx SINE Alu -19 293 1 711 197 182 23 chr1 11685342 11685510 -270508154 - MER33 DNA MER1_type -2342 243 17 1029 184 84 27 chr1 11685759 11686020 -270507644 - L1MD3 LINE L1 -13 7982 7707 437 218 20 0 chr1 11686093 11686194 -270507470 - L1MA10 LINE L1 -7 6327 6225 1746 154 6 35 chr1 11686300 11686619 -270507045 + AluSx SINE Alu 1 310 -2 1249 209 50 9 chr1 11686714 11687081 -270506583 + MLT1B LTR MaLR 46 390 0 269 227 0 30 chr1 11687083 11687149 -270506515 + MLT1I LTR MaLR 81 144 -265 2347 80 0 0 chr1 11687418 11687717 -270505947 + AluSq SINE Alu 1 299 -14 782 211 6 12 chr1 11687733 11687894 -270505770 - MIR SINE MIR -86 176 17 324 296 47 30 chr1 11687994 11688163 -270505501 + L2 LINE L2 3080 3251 -62 2310 57 0 0 chr1 11688951 11689268 -270504396 - AluY SINE Alu 0 317 1 1115 141 11 0 chr1 11689275 11689452 -270504212 - L1MB4 LINE L1 -2 6178 6000 253 241 11 58 chr1 11689478 11689565 -270504099 + MIR SINE MIR 65 147 -61 2247 112 0 0 chr1 11690089 11690401 -270503263 - AluSx SINE Alu 0 312 1 1845 141 3 13 chr1 11690403 11690707 -270502957 - AluJb SINE Alu -10 302 2 1240 114 0 6 chr1 11690803 11690979 -270502685 - AluSc SINE Alu -10 299 125 195 255 149 0 chr1 11691192 11691286 -270502378 - MIR SINE MIR -111 151 44 693 131 42 14 chr1 11691987 11692432 -270501232 + (TG)n Simple_repeat Simple_repeat 1 457 0 578 24 97 18 chr1 11692450 11692615 -270501049 + (TG)n Simple_repeat Simple_repeat 2 179 0 500 64 81 27 chr1 11692653 11692908 -270500756 + (GTGTG)n Simple_repeat Simple_repeat 1 268 0 2144 113 3 0 chr1 11693462 11693763 -270499901 - AluSg SINE Alu -8 302 1 459 322 35 0 chr1 11693769 11693940 -270499724 - MIR SINE MIR -51 211 35 2344 84 13 0 chr1 11694659 11694967 -270498697 - AluSx SINE Alu 0 312 1 374 250 52 0 chr1 11695009 11695125 -270498539 + MER103 DNA DNA 13 134 -32 996 206 83 29 chr1 11695697 11695974 -270497690 + MLT1J2 LTR MaLR 4 295 -155 1454 205 13 3 chr1 11695995 11696293 -270497371 - AluJo SINE Alu -11 301 1 644 212 32 0 chr1 11696308 11696463 -270497201 + MIR SINE MIR 35 192 -62 493 297 16 0 chr1 11696471 11696599 -270497065 + LTR16A LTR ERVL 229 358 -92 428 318 99 0 chr1 11696705 11696897 -270496767 + HERV16 LTR ERVL 79 289 -4707 766 172 0 16 chr1 11696897 11697025 -270496639 + FLAM_C SINE Alu 1 126 -7 476 168 9 75 chr1 11697070 11697177 -270496487 + MER20 DNA MER1_type 49 148 -71 1089 73 0 0 chr1 11697177 11697313 -270496351 + AluSq/x SINE Alu 1 136 -176 2107 119 0 3 chr1 11697314 11697616 -270496048 + AluSx SINE Alu 3 303 -9 304 137 20 0 chr1 11697620 11697671 -270495993 + MER20 DNA MER1_type 154 205 -14 1044 166 0 0 chr1 11697671 11697840 -270495824 + AluJb SINE Alu 144 312 0 2195 291 63 26 chr1 11697874 11698681 -270494983 + HERV16 LTR ERVL 307 1082 -4291 1715 130 23 33 chr1 11698681 11698980 -270494684 + AluJb SINE Alu 1 296 -16 2195 291 63 26 chr1 11698980 11699394 -270494270 + HERV16 LTR ERVL 1082 1479 -3894 2125 103 3 0 chr1 11699394 11699684 -270493980 - AluSp SINE Alu -21 292 2 2195 291 63 26 chr1 11699684 11699960 -270493704 + HERV16 LTR ERVL 1479 1954 -3419 1109 61 0 0 chr1 11699981 11700113 -270493551 + AluY SINE Alu 1 132 -179 2392 73 0 0 chr1 11700116 11700416 -270493248 + AluY SINE Alu 1 300 -11 1622 320 29 61 chr1 11700433 11700904 -270492760 + HERV16 LTR ERVL 1964 2404 -2592 2195 128 0 0 chr1 11700904 11701216 -270492448 - AluSx SINE Alu 0 312 1 1622 320 29 61 chr1 11701216 11701482 -270492182 + HERV16 LTR ERVL 2404 2677 -2319 1179 133 11 0 chr1 11701496 11701676 -270491988 + MER20 DNA MER1_type 37 218 -1 1740 149 35 0 chr1 11701730 11702019 -270491645 - AluJo SINE Alu -13 299 1 1331 319 23 18 chr1 11702045 11702653 -270491011 + HERV16 LTR ERVL 2712 3344 -2310 1294 349 15 36 chr1 11702734 11703402 -270490262 + ERVL LTR ERVL 4729 5382 -382 780 318 23 19 chr1 11703547 11703811 -270489853 + LTR16A LTR ERVL 16 280 -170 2429 172 80 54 chr1 11755140 11755675 -270437989 - MLT2B3 LTR ERVL 0 554 6 303 336 52 9 chr1 11755706 11755822 -270437842 + MIR SINE MIR 92 212 -50 952 260 23 24 chr1 11756030 11756281 -270437383 - MIR SINE MIR 0 262 8 2221 154 137 0 chr1 11756392 11756794 -270436870 + MSTB2 LTR MaLR 1 457 0 282 270 63 54 chr1 11756840 11756951 -270436713 + MIR SINE MIR 20 131 -131 409 291 0 0 chr1 11756982 11757068 -270436596 + MER5A DNA MER1_type 9 94 -95 237 278 105 53 chr1 11757118 11757251 -270436413 + L2 LINE L2 3174 3313 0 1202 300 65 40 chr1 11757721 11758702 -270434962 - L1MEc LINE L1 -4576 1820 815 1549 176 7 21 chr1 11758702 11758981 -270434683 - AluJo SINE Alu -3 309 35 208 344 0 0 chr1 11759744 11759805 -270433859 + L2 LINE L2 3209 3269 -3 538 197 49 8 chr1 11759923 11760045 -270433619 - L1MA10 LINE L1 -3 6331 6205 1690 176 17 3 chr1 11760047 11760342 -270433322 + AluJo SINE Alu 1 299 -13 3712 217 67 28 chr1 11760342 11760551 -270433113 - L1MEc LINE L1 -2763 3452 3253 1485 123 28 16 chr1 11760551 11760804 -270432860 - L1MA1 LINE L1 0 6302 6047 3712 217 67 28 chr1 11760804 11761736 -270431928 - L1MEc LINE L1 -2962 3253 2241 2073 95 7 4 chr1 11761736 11762032 -270431632 + AluY SINE Alu 11 307 0 3712 217 67 28 chr1 11762032 11762597 -270431067 - L1MEc LINE L1 -3974 2241 1700 1816 154 13 32 chr1 11762597 11762708 -270430956 + AluJo SINE Alu 1 113 -199 2623 95 3 14 chr1 11762708 11763067 -270430597 - THE1A LTR MaLR 0 355 1 12276 82 2 10 chr1 11763067 11764659 -270429005 - THE1A-int LTR MaLR 0 1580 1 2787 64 3 11 chr1 11764659 11765017 -270428647 - THE1A LTR MaLR 0 355 1 1816 154 13 32 chr1 11765017 11765214 -270428450 + AluJo SINE Alu 110 305 -7 730 255 87 31 chr1 11765214 11765595 -270428069 - L1MEc LINE L1 -4688 1708 1307 520 215 249 24 chr1 11765629 11765834 -270427830 - L1MEc LINE L1 -6143 253 3 27 0 0 0 chr1 11765856 11765883 -270427781 + AT_rich Low_complexity Low_complexity 1 27 0 845 205 35 6 chr1 11766021 11766192 -270427472 - MER5B DNA MER1_type 0 178 3 192 193 119 110 chr1 11766532 11766641 -270427023 - MIR3 SINE MIR -15 193 84 333 236 191 11 chr1 11766927 11767016 -270426648 - L2 LINE L2 0 3272 3168 430 264 23 16 chr1 11768347 11768476 -270425188 - MIR SINE MIR -70 192 63 291 202 191 11 chr1 11768721 11768810 -270424854 + MIR SINE MIR 33 137 -71 254 296 49 0 chr1 11769055 11769136 -270424528 - L2 LINE L2 0 3272 3188 758 273 32 14 chr1 11769696 11769916 -270423748 - MIR SINE MIR -32 230 7 338 303 43 62 chr1 11770308 11770470 -270423194 + MER91B DNA MER1_type 18 176 -14 404 289 28 85 chr1 11770539 11770750 -270422914 + MIR SINE MIR 37 235 -27 452 330 86 9 chr1 11772026 11772247 -270421417 + MIR SINE MIR 25 262 0 246 325 130 43 chr1 11772903 11773318 -270420346 - L2 LINE L2 -5 3267 2817 * 256 177 0 91 chr1 11773309 11773485 -270420179 + G-rich Low_complexity Low_complexity 1 159 0 238 145 16 65 chr1 11773498 11773560 -270420104 + G-rich Low_complexity Low_complexity 1 59 0 201 74 0 0 chr1 11773572 11773599 -270420065 + (GGAGA)n Simple_repeat Simple_repeat 1 27 0 330 325 212 0 chr1 11773743 11774026 -270419638 - L2 LINE L2 -526 2788 2446 431 142 0 87 chr1 11774447 11774896 -270418768 + (CAGCC)n Simple_repeat Simple_repeat 1 410 0 220 259 176 0 chr1 11775030 11775115 -270418549 + MIR SINE MIR 89 188 -74 217 222 60 54 chr1 11775360 11775527 -270418137 + (CAGAG)n Simple_repeat Simple_repeat 3 170 0 333 307 6 28 chr1 11776492 11776671 -270416993 + C-rich Low_complexity Low_complexity 3 177 0 357 339 11 11 chr1 11776708 11776885 -270416779 + C-rich Low_complexity Low_complexity 3 179 0 729 235 75 5 chr1 11777383 11777583 -270416081 + MIR SINE MIR 13 226 -36 1284 124 4 68 chr1 11777700 11777934 -270415730 - AluJo SINE Alu -7 305 87 577 301 170 16 chr1 11778038 11778350 -270415314 + L2 LINE L2 2912 3271 -1 1991 117 31 14 chr1 11778852 11779142 -270414522 - AluSx SINE Alu -17 295 1 2184 99 13 0 chr1 11779178 11779482 -270414182 + AluY SINE Alu 1 308 -3 804 349 101 9 chr1 11779570 11779997 -270413667 + L2 LINE L2 2848 3313 0 184 273 93 93 chr1 11780012 11780151 -270413513 + L2 LINE L2 3119 3257 -56 399 275 158 0 chr1 11780337 11780508 -270413156 - L2 LINE L2 -1 3312 3115 305 311 66 0 chr1 11781170 11781292 -270412372 - MIR3 SINE MIR -49 159 30 452 248 16 47 chr1 11783687 11783816 -270409848 - MIR SINE MIR -118 144 20 237 287 126 0 chr1 11784209 11784296 -270409368 + MIR SINE MIR 44 141 -67 1639 164 48 48 chr1 11784550 11784602 -270409062 - L1MB3 LINE L1 0 6183 6132 183 42 0 0 chr1 11784602 11784626 -270409038 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1959 104 14 28 chr1 11784626 11784913 -270408751 - AluSx SINE Alu -29 283 1 1639 164 48 48 chr1 11784913 11785157 -270408507 - L1MB3 LINE L1 -50 6133 5883 2331 88 7 3 chr1 11785157 11785464 -270408200 - AluSx SINE Alu -4 308 1 1639 164 48 48 chr1 11785464 11785544 -270408120 - L1MB3 LINE L1 -299 5884 5805 422 323 82 43 chr1 11785791 11786070 -270407594 - L2 LINE L2 -75 3197 2908 418 278 57 17 chr1 11786691 11786867 -270406797 - MIR SINE MIR -1 261 79 225 308 19 47 chr1 11787734 11787841 -270405823 + MIR3 SINE MIR 105 208 0 232 308 94 8 chr1 11788921 11789038 -270404626 - MIR SINE MIR -75 187 61 1260 248 72 19 chr1 11790063 11790491 -270403173 - MLT1C LTR MaLR -1 466 16 408 339 121 0 chr1 11790497 11790671 -270402993 - MIR SINE MIR -56 206 12 1489 170 59 4 chr1 11791240 11791510 -270402154 + AluSx SINE Alu 1 285 -27 219 36 0 0 chr1 11791519 11791547 -270402117 + (TAA)n Simple_repeat Simple_repeat 1 28 0 211 229 181 24 chr1 11791725 11791808 -270401856 - MIR SINE MIR -59 203 108 185 377 35 9 chr1 11792527 11792641 -270401023 - MIR SINE MIR -62 146 30 654 332 53 11 chr1 11792675 11792986 -270400678 + L1MC/D LINE L1 5414 5730 -693 204 277 0 0 chr1 11793184 11793231 -270400433 + GA-rich Low_complexity Low_complexity 3 49 0 231 345 108 7 chr1 11793552 11793700 -270399964 + MIR SINE MIR 59 221 -41 234 342 118 58 chr1 11794256 11794619 -270399045 + L2 LINE L2 2811 3195 -77 188 254 211 0 chr1 11795182 11795253 -270398411 - MIR SINE MIR -90 118 33 423 284 37 15 chr1 11795408 11795542 -270398122 - MIR SINE MIR -70 192 56 195 220 40 0 chr1 11795685 11795735 -270397929 + MIR SINE MIR 70 121 -141 698 261 76 33 chr1 11795738 11796068 -270397596 - MLT1H LTR MaLR -1 548 205 2099 127 0 13 chr1 11796109 11796424 -270397240 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr1 11796425 11796446 -270397218 + AT_rich Low_complexity Low_complexity 1 21 0 1210 219 62 78 chr1 11796448 11796569 -270397095 + MLT1C LTR MaLR 36 157 -310 1886 173 19 73 chr1 11796569 11796979 -270396685 + MLT1B LTR MaLR 3 390 0 1210 219 62 78 chr1 11796979 11797295 -270396369 + MLT1C LTR MaLR 157 466 -1 630 262 84 5 chr1 11797295 11797486 -270396178 - MLT1H LTR MaLR -342 207 2 206 318 146 0 chr1 11797491 11797601 -270396063 + MIR SINE MIR 123 248 -14 214 274 151 0 chr1 11797633 11797706 -270395958 + L2 LINE L2 3168 3251 -21 889 231 0 0 chr1 11799267 11799440 -270394224 + AluJo SINE Alu 122 294 -18 525 144 22 44 chr1 11799448 11799629 -270394035 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 2333 79 0 29 chr1 11799993 11800309 -270393355 - AluY SINE Alu -4 307 1 1933 140 20 3 chr1 11800311 11800604 -270393060 - AluJo SINE Alu -14 298 1 1777 218 93 29 chr1 11801031 11801540 -270392124 + L1ME3 LINE L1 5548 6100 -62 2502 50 0 0 chr1 11801540 11801839 -270391825 - AluY SINE Alu -12 299 1 1777 218 93 29 chr1 11801839 11801907 -270391757 + L1ME3 LINE L1 6100 6162 0 2070 102 11 0 chr1 11801907 11802192 -270391472 - AluSx SINE Alu -24 288 1 1127 288 81 34 chr1 11803256 11803652 -270390012 - L2 LINE L2 0 3313 2839 1797 174 0 7 chr1 11803652 11803951 -270389713 + AluJo SINE Alu 1 297 -15 1127 288 81 34 chr1 11803951 11804100 -270389564 - L2 LINE L2 -474 2839 2699 1541 208 40 103 chr1 11804132 11804657 -270389007 + MLT2B1 LTR ERVL 27 518 -2 313 216 80 0 chr1 11804660 11804748 -270388916 - L2 LINE L2 -629 2685 2591 2992 164 25 4 chr1 11805297 11805773 -270387891 - MER66B LTR ERV1 0 486 1 340 397 43 5 chr1 11805833 11806017 -270387647 + MIR3 SINE MIR 13 203 -5 290 321 207 0 chr1 11806817 11806957 -270386707 - MIR SINE MIR -24 238 70 514 308 104 23 chr1 11807304 11807603 -270386061 - MLT1K LTR MaLR -128 460 138 307 115 0 0 chr1 11807656 11807708 -270385956 + MLT1G LTR MaLR 12 63 -532 694 149 104 52 chr1 11807725 11807879 -270385785 + MER70B LTR ERVL 1 162 -416 * 1634 218 52 8 chr1 11807875 11808242 -270385422 + MER70A LTR ERVL 90 472 0 341 315 11 11 chr1 11808242 11808405 -270385259 + MLT1G LTR MaLR 79 241 -308 686 219 25 6 chr1 11808422 11808582 -270385082 + MLT1G LTR MaLR 426 588 -2 276 30 0 0 chr1 11808584 11808617 -270385047 + (TG)n Simple_repeat Simple_repeat 1 33 0 604 324 49 0 chr1 11809307 11809511 -270384153 + MIR SINE MIR 4 217 -45 262 167 21 0 chr1 11811151 11811199 -270382465 + L2 LINE L2 3265 3313 0 208 385 83 0 chr1 11811300 11811409 -270382255 - L2 LINE L2 0 3272 3155 273 29 0 0 chr1 11811919 11811953 -270381711 + (CA)n Simple_repeat Simple_repeat 1 34 0 243 294 156 0 chr1 11812577 11812686 -270380978 + MIR3 SINE MIR 35 160 -48 758 186 8 0 chr1 11813628 11813752 -270379912 + AluJo SINE Alu 1 125 -187 737 135 8 0 chr1 11813754 11813880 -270379784 + GA-rich Low_complexity Low_complexity 1 127 0 789 175 88 29 chr1 11813893 11814064 -270379600 + AluJo SINE Alu 120 300 -12 1345 165 0 56 chr1 11814074 11814290 -270379374 + L1M4 LINE L1 4961 5155 -991 2097 106 33 0 chr1 11814290 11814592 -270379072 + AluSx SINE Alu 1 312 0 1345 165 0 56 chr1 11814592 11814696 -270378968 + L1M4 LINE L1 5155 5263 -883 588 259 90 21 chr1 11814717 11814906 -270378758 + MIR SINE MIR 50 251 -11 189 244 58 58 chr1 11815157 11815243 -270378421 - MER5B DNA MER1_type -65 113 28 354 317 11 27 chr1 11815865 11816048 -270377616 + L1ME4a LINE L1 5733 5912 -209 1494 147 88 28 chr1 11816055 11816268 -270377396 + AluJo SINE Alu 6 242 -70 2461 178 38 23 chr1 11816268 11816747 -270376917 + MER66B LTR ERV1 1 486 0 1494 147 88 28 chr1 11816747 11816818 -270376846 + AluJo SINE Alu 242 307 -5 417 211 48 78 chr1 11816852 11817018 -270376646 + L1ME4a LINE L1 5960 6120 -1 1535 228 78 42 chr1 11817593 11818044 -270375620 + MLT1C LTR MaLR 1 467 0 489 269 17 0 chr1 11818073 11818192 -270375472 - MIR SINE MIR -95 167 47 459 355 39 0 chr1 11818263 11818418 -270375246 + MIR SINE MIR 48 208 -54 515 270 40 3 chr1 11819288 11819439 -270374225 - MIR SINE MIR -62 146 30 1059 206 0 5 chr1 11819526 11819730 -270373934 + MER58A DNA MER1_type 22 224 0 194 425 45 0 chr1 11819733 11819867 -270373797 + MIR SINE MIR 113 252 -10 2251 86 16 3 chr1 11819872 11820175 -270373489 - AluY SINE Alu -4 307 1 2168 116 0 0 chr1 11820422 11820723 -270372941 - AluSq SINE Alu -12 301 1 600 259 6 36 chr1 11821091 11821257 -270372407 + MER91B DNA MER1_type 4 164 -26 260 325 12 0 chr1 11821265 11821345 -270372319 - L2 LINE L2 -54 3259 3179 611 212 42 12 chr1 11821940 11822113 -270371551 + MIR SINE MIR 1 176 -44 200 35 35 0 chr1 11822555 11822584 -270371080 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 226 60 24 chr1 11823048 11823132 -270370532 + MLT1K LTR MaLR 473 559 -29 263 220 0 0 chr1 11823135 11823185 -270370479 + MER117 DNA MER1_type 44 93 -104 707 299 0 6 chr1 11823340 11823517 -270370147 + MIR SINE MIR 2 177 -85 201 237 0 0 chr1 11823622 11823681 -270369983 + (CA)n Simple_repeat Simple_repeat 1 59 0 289 107 89 0 chr1 11823692 11823748 -270369916 + MLT2C2 LTR ERVL 364 424 -40 257 289 0 13 chr1 11823748 11823824 -270369840 + (CATA)n Simple_repeat Simple_repeat 2 76 0 269 140 0 35 chr1 11823826 11823883 -270369781 + MLT2B1 LTR ERVL 466 520 0 390 280 223 24 chr1 11824626 11824837 -270368827 - MIR SINE MIR -8 254 2 256 166 0 9 chr1 11825009 11825066 -270368598 - MLT2C2 LTR ERVL 0 464 422 224 241 0 19 chr1 11825082 11825136 -270368528 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 2387 149 30 9 chr1 11825136 11825560 -270368104 - MLT2C2 LTR ERVL -40 480 1 1708 144 2 138 chr1 11826172 11826352 -270367312 + MLT1B LTR MaLR 8 211 -179 1895 158 0 0 chr1 11826352 11826643 -270367021 + AluJb SINE Alu 1 291 -21 1708 144 2 138 chr1 11826643 11826791 -270366873 + MLT1B LTR MaLR 211 263 -127 2032 107 12 55 chr1 11826791 11827117 -270366547 - AluSx SINE Alu 0 312 1 1708 144 2 138 chr1 11827117 11827230 -270366434 + MLT1B LTR MaLR 263 390 0 935 248 16 29 chr1 11827537 11827680 -270365984 + MIR SINE MIR 20 160 -102 3796 52 2 0 chr1 11827680 11828123 -270365541 - MLT2A1 LTR ERVL 0 444 1 935 248 16 29 chr1 11828123 11828225 -270365439 + MIR SINE MIR 160 262 0 429 262 116 77 chr1 11828428 11828686 -270364978 + L2 LINE L2 2437 2684 -630 1547 141 43 50 chr1 11828686 11828785 -270364879 + AluJb SINE Alu 1 99 -213 2061 92 3 7 chr1 11828785 11829104 -270364560 + AluSq SINE Alu 1 318 0 1547 141 43 50 chr1 11829104 11829280 -270364384 + AluJb SINE Alu 99 275 -37 192 40 0 0 chr1 11829281 11829306 -270364358 + (TCTCTG)n Simple_repeat Simple_repeat 2 26 0 326 23 23 0 chr1 11829307 11829350 -270364314 + (CA)n Simple_repeat Simple_repeat 1 44 0 429 262 116 77 chr1 11829350 11829423 -270364241 + L2 LINE L2 2683 2785 -529 802 261 89 43 chr1 11829467 11829838 -270363826 + L2 LINE L2 2926 3313 0 1895 141 17 0 chr1 11830509 11830806 -270362858 + AluSx SINE Alu 2 303 -9 580 311 49 0 chr1 11830882 11831065 -270362599 + MIR SINE MIR 13 204 -58 200 172 17 0 chr1 11831065 11831123 -270362541 + (TA)n Simple_repeat Simple_repeat 2 60 0 468 318 40 6 chr1 11831660 11831833 -270361831 + MIR SINE MIR 9 187 -75 2377 121 5 39 chr1 11831914 11832302 -270361362 - THE1C LTR MaLR 0 375 1 825 248 41 11 chr1 11832409 11832679 -270360985 + LTR16C LTR ERVL 214 491 0 844 168 0 0 chr1 11832791 11832922 -270360742 + FLAM_A SINE Alu 1 131 -2 2380 167 39 9 chr1 11833451 11833888 -270359776 + MER66B LTR ERV1 27 476 -10 498 291 62 59 chr1 11834135 11834206 -270359458 + L1ME4a LINE L1 5456 5525 -596 2191 114 0 0 chr1 11834206 11834503 -270359161 - AluSg SINE Alu -13 297 1 498 291 62 59 chr1 11834503 11834919 -270358745 + L1ME4a LINE L1 5525 5944 -177 245 149 0 43 chr1 11835114 11835161 -270358503 + MLT1J LTR MaLR 91 135 -376 1517 160 132 7 chr1 11835192 11835514 -270358150 + MLT1A2 LTR MaLR 1 390 0 405 173 198 0 chr1 11836298 11836379 -270357285 + FLAM_A SINE Alu 10 106 -36 1663 151 3 25 chr1 11836596 11836913 -270356751 + MER33 DNA MER1_type 2 311 -13 464 14 55 0 chr1 11837038 11837111 -270356553 + (TTTTTG)n Simple_repeat Simple_repeat 2 78 0 190 343 27 0 chr1 11837646 11837719 -270355945 + MER5A DNA MER1_type 74 148 -41 381 275 62 67 chr1 11838166 11838344 -270355320 - MIR SINE MIR -70 192 16 527 296 77 6 chr1 11838959 11839128 -270354536 - MIR3 SINE MIR -19 189 9 1070 252 73 69 chr1 11839150 11839569 -270354095 + MLT1H1 LTR MaLR 7 429 -126 2889 111 21 12 chr1 11839569 11839993 -270353671 + MSTA LTR MaLR 1 428 0 1070 252 73 69 chr1 11839993 11840121 -270353543 + MLT1H1 LTR MaLR 429 555 0 2231 111 0 6 chr1 11840295 11840610 -270353054 - AluSp SINE Alu 0 313 1 247 350 133 0 chr1 11840617 11840737 -270352927 - L2 LINE L2 -1 3271 3136 1621 178 7 0 chr1 11841003 11841278 -270352386 + AluJo SINE Alu 10 286 -26 459 264 0 0 chr1 11842311 11842421 -270351243 - L2 LINE L2 -1 3312 3203 702 314 109 21 chr1 11842455 11842793 -270350871 + MLT1J2 LTR MaLR 33 400 -50 1560 226 206 28 chr1 11842822 11842861 -270350803 + MLT1G1 LTR MaLR 1 32 -563 2164 125 0 0 chr1 11842861 11843172 -270350492 + AluSx SINE Alu 1 311 -1 1560 226 206 28 chr1 11843172 11843316 -270350348 + MLT1G1 LTR MaLR 32 149 -446 1769 208 38 58 chr1 11843316 11843768 -270349896 + LTR47B LTR ERVL 1 443 0 1560 226 206 28 chr1 11843768 11844088 -270349576 + MLT1G1 LTR MaLR 149 595 0 717 279 69 26 chr1 11844154 11844387 -270349277 - MIR SINE MIR 0 262 20 252 0 0 0 chr1 11844423 11844451 -270349213 + (CAA)n Simple_repeat Simple_repeat 2 29 0 24 67 0 0 chr1 11844509 11844554 -270349110 + AT_rich Low_complexity Low_complexity 1 45 0 731 211 128 15 chr1 11844597 11844801 -270348863 + MIR SINE MIR 31 257 -5 471 231 18 2 chr1 11845447 11845583 -270348081 + MIR SINE MIR 17 156 -62 803 304 143 11 chr1 11846745 11847094 -270346570 + L2 LINE L2 2919 3313 0 313 270 165 0 chr1 11847112 11847227 -270346437 - L2 LINE L2 -1 3271 3138 489 335 179 58 chr1 11847286 11847663 -270346001 + L2 LINE L2 2238 2568 -745 1472 165 13 0 chr1 11847663 11847900 -270345764 - AluJo SINE Alu -47 265 26 489 335 179 58 chr1 11847900 11847923 -270345741 + L2 LINE L2 2568 2587 -726 1922 93 0 45 chr1 11847923 11848262 -270345402 - AluSx SINE Alu 0 332 7 489 335 179 58 chr1 11848262 11848589 -270345075 + L2 LINE L2 2587 3058 -255 2076 131 3 6 chr1 11848891 11849204 -270344460 - AluSx SINE Alu 0 312 1 537 174 0 0 chr1 11849350 11849448 -270344216 + FLAM_A SINE Alu 44 141 -1 1156 210 48 12 chr1 11850176 11850428 -270343236 + MIR SINE MIR 2 262 0 459 261 23 15 chr1 11851137 11851267 -270342397 - MIR SINE MIR -58 150 20 524 254 62 40 chr1 11851395 11851572 -270342092 + MIR3 SINE MIR 5 185 -23 314 326 11 0 chr1 11851587 11851682 -270341982 - MIR3 SINE MIR -51 157 62 1616 188 0 13 chr1 11853399 11853697 -270339967 + AluJb SINE Alu 12 305 -7 456 282 67 55 chr1 11854000 11854255 -270339409 - L2 LINE L2 -1 3271 3014 210 265 20 39 chr1 11854541 11854643 -270339021 + (CCCCAG)n Simple_repeat Simple_repeat 3 102 0 313 343 0 37 chr1 11854956 11855090 -270338574 - MIR SINE MIR -128 134 6 550 345 31 31 chr1 11855101 11855391 -270338273 - MER102b DNA MER1_type -10 331 42 262 116 0 0 chr1 11855406 11855449 -270338215 - L2 LINE L2 -4 3309 3267 363 184 0 122 chr1 11855449 11855510 -270338154 - MER81 DNA DNA 0 114 68 2033 124 3 3 chr1 11855510 11855808 -270337856 + AluSx SINE Alu 1 298 -14 363 184 0 122 chr1 11855808 11855844 -270337820 - MER81 DNA DNA -46 68 29 313 317 21 83 chr1 11855847 11856087 -270337577 - L2 LINE L2 -41 3231 3007 510 281 35 25 chr1 11856120 11856319 -270337345 + L1MC5 LINE L1 5650 5850 -1958 1512 171 21 21 chr1 11856320 11856464 -270337200 - AluJo SINE Alu -32 280 134 2092 121 0 7 chr1 11856464 11856761 -270336903 - AluSq SINE Alu -18 295 1 1512 171 21 21 chr1 11856761 11856896 -270336768 - AluJo SINE Alu -177 135 1 905 214 90 0 chr1 11857121 11857322 -270336342 - MER20 DNA MER1_type 0 219 1 1159 88 0 0 chr1 11857454 11857613 -270336051 + AluSc SINE Alu 150 308 -1 658 268 53 13 chr1 11857613 11857841 -270335823 + L1MC5 LINE L1 7260 7496 -465 485 244 29 29 chr1 11858002 11858207 -270335457 + L1MC5 LINE L1 7587 7791 -170 369 347 52 19 chr1 11858283 11858554 -270335110 - L2 LINE L2 -338 2976 2697 1755 160 45 0 chr1 11858562 11858850 -270334814 + AluJo SINE Alu 1 301 -11 1832 212 17 29 chr1 11858856 11859226 -270334438 + L1MB7 LINE L1 5766 6132 -52 2186 105 10 0 chr1 11859226 11859522 -270334142 + AluSx SINE Alu 1 299 -13 1832 212 17 29 chr1 11859522 11859570 -270334094 + L1MB7 LINE L1 6132 6179 -5 2039 120 27 0 chr1 11859573 11859874 -270333790 + AluSx SINE Alu 1 309 -3 437 295 51 19 chr1 11860315 11860471 -270333193 + MLT1I LTR MaLR 210 370 -39 4029 128 99 88 chr1 11860478 11861831 -270331833 + pTR5 LTR ERV1 74 2438 0 251 250 15 15 chr1 11862690 11862758 -270330906 + C-rich Low_complexity Low_complexity 2 69 0 455 319 101 5 chr1 11863055 11863243 -270330421 + MIR SINE MIR 57 262 0 421 215 61 100 chr1 11863323 11863493 -270330171 + MIR SINE MIR 10 173 -63 586 264 275 26 chr1 11863557 11864012 -270329652 - MLT1K LTR MaLR -6 582 15 457 319 45 33 chr1 11864392 11864697 -270328967 + MLT1L LTR MaLR 248 592 -23 1910 187 18 45 chr1 11864799 11864951 -270328713 - MLT2D LTR ERVL 0 520 365 2650 93 11 11 chr1 11864951 11865315 -270328349 + THE1B LTR MaLR 1 364 0 1910 187 18 45 chr1 11865315 11865609 -270328055 - MLT2D LTR ERVL -155 365 2 419 257 50 14 chr1 11865618 11865758 -270327906 - MIR3 SINE MIR -43 165 21 760 192 62 13 chr1 11866174 11866398 -270327266 - MER113 DNA MER1_type? -286 235 1 185 194 0 113 chr1 11866407 11866469 -270327195 - L3b LINE CR1 -225 1358 1304 1761 152 0 23 chr1 11867504 11867807 -270325857 + AluJb SINE Alu 1 296 -16 341 292 9 35 chr1 11867809 11867922 -270325742 - MIR SINE MIR -106 156 47 518 290 93 0 chr1 11868408 11868591 -270325073 - MIR SINE MIR 0 262 63 489 258 50 13 chr1 11868673 11868832 -270324832 - MIR SINE MIR -90 172 8 207 234 0 31 chr1 11869111 11869175 -270324489 - MIR SINE MIR -63 145 84 272 300 83 17 chr1 11869565 11869712 -270323952 - MER5B DNA MER1_type -2 187 42 535 296 58 37 chr1 11869772 11869961 -270323703 - MIR3 SINE MIR -11 197 5 303 130 0 0 chr1 11870162 11870216 -270323448 + (CA)n Simple_repeat Simple_repeat 2 55 0 1033 280 84 36 chr1 11870219 11870298 -270323366 + MLT1K LTR MaLR 146 220 -368 2186 110 0 3 chr1 11870298 11870598 -270323066 + AluSx SINE Alu 1 299 -13 1033 280 84 36 chr1 11870598 11870936 -270322728 + MLT1K LTR MaLR 220 583 -5 195 274 164 0 chr1 11871087 11871160 -270322504 + MIR SINE MIR 30 114 -94 2541 179 50 29 chr1 11871163 11871622 -270322042 + MER74A LTR ERVL 3 476 -82 2427 78 0 0 chr1 11871622 11871930 -270321734 - AluSq SINE Alu -5 308 1 2541 179 50 29 chr1 11871930 11871988 -270321676 + MER74A LTR ERVL 476 531 -27 319 267 9 57 chr1 11872118 11872223 -270321441 - MIR SINE MIR -109 153 54 420 252 8 47 chr1 11872931 11873058 -270320606 - MIR SINE MIR -15 247 126 404 279 29 22 chr1 11873060 11873196 -270320468 + Charlie8 DNA MER1_type 139 275 -2142 375 210 12 0 chr1 11873425 11873506 -270320158 - MIR3 SINE MIR -17 191 110 195 262 0 0 chr1 11873602 11873653 -270320011 - MIR SINE MIR -96 166 116 262 292 87 36 chr1 11873926 11874083 -270319581 - MIR3 SINE MIR -63 145 5 218 162 27 0 chr1 11874279 11874316 -270319348 + MER91 DNA MER1_type 1 38 -152 227 283 0 0 chr1 11875034 11875087 -270318577 + MIR SINE MIR 48 100 -162 359 329 62 71 chr1 11875170 11875376 -270318288 - L2 LINE L2 -19 3253 3050 2099 101 42 0 chr1 11875376 11875663 -270318001 - AluSq SINE Alu -14 299 1 359 329 62 71 chr1 11875663 11875793 -270317871 - L2 LINE L2 -222 3050 2920 1756 151 14 14 chr1 11875825 11876109 -270317555 - AluJb SINE Alu -24 288 5 460 164 151 20 chr1 11876206 11876358 -270317306 - MER69 DNA AcHobo -203 2323 2152 974 177 0 61 chr1 11876362 11876543 -270317121 + AluJb SINE Alu 125 294 -18 303 186 0 34 chr1 11876543 11876602 -270317062 - L1MC4 LINE L1 -1346 6696 6640 299 225 98 70 chr1 11876608 11876647 -270317017 - MER69 DNA AcHobo -376 2150 2114 210 37 0 0 chr1 11876647 11876674 -270316990 + (CA)n Simple_repeat Simple_repeat 2 28 0 299 225 98 70 chr1 11876674 11876712 -270316952 - MER69 DNA AcHobo -412 2114 2079 1708 245 80 15 chr1 11876712 11876893 -270316771 + MLT1D LTR MaLR 1 169 -336 2089 127 17 0 chr1 11876893 11877192 -270316472 + AluSx SINE Alu 1 304 -8 1708 245 80 15 chr1 11877192 11877484 -270316180 + MLT1D LTR MaLR 169 505 0 299 225 98 70 chr1 11877484 11877526 -270316138 - MER69 DNA AcHobo -447 2079 718 603 192 6 72 chr1 11877533 11877700 -270315964 - MER69 DNA AcHobo -2328 198 43 333 191 0 101 chr1 11878778 11878834 -270314830 + L1ME4a LINE L1 6042 6087 -34 2102 120 3 3 chr1 11878834 11879133 -270314531 - AluSq SINE Alu -14 299 1 333 191 0 101 chr1 11879133 11879165 -270314499 + L1ME4a LINE L1 6087 6121 0 1917 134 0 0 chr1 11879531 11879807 -270313857 + AluSx SINE Alu 21 296 -16 189 310 216 6 chr1 11879834 11879950 -270313714 - L2 LINE L2 -102 3211 3121 2348 75 0 7 chr1 11879950 11880256 -270313408 + AluY SINE Alu 3 306 -5 189 310 216 6 chr1 11880256 11880310 -270313354 - L2 LINE L2 -192 3121 3005 321 306 65 0 chr1 11880777 11880885 -270312779 + MER63 DNA MER1_type 1 741 -321 243 273 0 0 chr1 11880881 11880936 -270312728 + MER63 DNA MER1_type 687 741 -95 * 424 282 0 0 chr1 11880932 11881035 -270312629 + MER63 DNA MER1_type 686 788 -273 396 261 18 27 chr1 11881439 11881550 -270312114 + L2 LINE L2 3161 3270 -2 1506 202 6 26 chr1 11882373 11882685 -270310979 - AluJb SINE Alu -6 306 1 307 140 0 0 chr1 11882700 11882750 -270310914 + L2 LINE L2 3264 3313 0 748 114 8 15 chr1 11883756 11883888 -270309776 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 181 160 20 20 chr1 11883892 11883942 -270309722 + G-rich Low_complexity Low_complexity 2 51 0 * 1055 70 5 48 chr1 11883941 11884016 -270309648 + (GGAA)n Simple_repeat Simple_repeat 2 79 -101 1818 131 52 0 chr1 11884016 11884322 -270309342 + AluSx SINE Alu 1 320 0 1055 70 5 48 chr1 11884322 11884432 -270309232 + (GGAA)n Simple_repeat Simple_repeat 79 180 0 506 279 96 10 chr1 11884450 11884647 -270309017 - MIR SINE MIR -15 247 34 566 237 58 0 chr1 11884995 11885134 -270308530 + MIR SINE MIR 2 148 -114 2055 113 0 7 chr1 11885134 11885417 -270308247 + AluSx SINE Alu 1 281 -31 2189 118 0 0 chr1 11885457 11885754 -270307910 - AluSx SINE Alu -15 297 1 247 171 0 0 chr1 11885837 11885878 -270307786 + L2 LINE L2 3220 3260 -12 381 264 69 125 chr1 11885912 11886200 -270307464 - L2 LINE L2 -77 3195 2924 499 306 73 10 chr1 11887027 11887158 -270306506 + MIR SINE MIR 29 179 -83 1959 63 47 0 chr1 11887158 11887412 -270306252 + AluY SINE Alu 1 266 -45 499 306 73 10 chr1 11887412 11887486 -270306178 + MIR SINE MIR 179 247 -15 2570 39 0 3 chr1 11887550 11887857 -270305807 - AluY SINE Alu -5 306 1 1118 94 0 0 chr1 11888694 11888843 -270304821 + AluSg/x SINE Alu 145 293 -17 480 293 92 44 chr1 11889752 11890001 -270303663 + MLT1K LTR MaLR 315 575 -13 355 282 87 27 chr1 11890005 11890154 -270303510 - MIR SINE MIR -89 173 16 277 273 0 0 chr1 11890231 11890286 -270303378 + MIR SINE MIR 70 124 -84 264 77 0 0 chr1 11890820 11890859 -270302805 + (T)n Simple_repeat Simple_repeat 1 39 0 203 318 54 31 chr1 11891169 11891298 -270302366 + L2 LINE L2 2994 3125 -147 756 226 115 14 chr1 11891331 11891548 -270302116 - MIR SINE MIR -5 257 19 2208 115 3 0 chr1 11891636 11891940 -270301724 + AluSx SINE Alu 1 305 -7 505 303 69 16 chr1 11892173 11892361 -270301303 + MIR SINE MIR 56 253 -9 201 108 0 0 chr1 11892413 11892450 -270301214 + (A)n Simple_repeat Simple_repeat 1 37 0 203 268 0 36 chr1 11892658 11892714 -270300950 - L2 LINE L2 -1 3271 3218 370 283 48 11 chr1 11892747 11892909 -270300755 + MIR SINE MIR 36 200 -62 2103 103 13 7 chr1 11893142 11893442 -270300222 - AluSx SINE Alu -10 302 1 2223 95 3 0 chr1 11894636 11894931 -270298733 + AluSc SINE Alu 1 296 -13 950 74 0 0 chr1 11895240 11895361 -270298303 + AluSg/x SINE Alu 183 303 -9 223 404 11 11 chr1 11895482 11895576 -270298088 + MIR SINE MIR 42 135 -73 216 214 0 0 chr1 11895655 11895711 -270297953 + (CAT)n Simple_repeat Simple_repeat 3 58 0 570 298 93 31 chr1 11895894 11896092 -270297572 + L2 LINE L2 2812 3031 -282 2080 126 0 7 chr1 11896092 11896393 -270297271 + AluSx SINE Alu 1 299 -13 570 298 93 31 chr1 11896393 11896452 -270297212 + L2 LINE L2 3031 3085 -228 2241 105 0 16 chr1 11896508 11896823 -270296841 + AluSx SINE Alu 2 311 -1 333 250 0 0 chr1 11896823 11896891 -270296773 + MIR SINE MIR 59 126 -136 288 77 0 0 chr1 11896893 11896932 -270296732 + (T)n Simple_repeat Simple_repeat 1 39 0 982 118 0 14 chr1 11896957 11897101 -270296563 - AluSq/x SINE Alu -171 142 1 359 281 67 22 chr1 11897101 11897236 -270296428 + MIR SINE MIR 121 261 -1 262 209 291 9 chr1 11897241 11897351 -270296313 + L2 LINE L2 3156 3296 -17 1959 137 7 0 chr1 11897370 11897655 -270296009 + AluJo SINE Alu 1 287 -25 29 0 0 0 chr1 11897655 11897684 -270295980 + AT_rich Low_complexity Low_complexity 1 29 0 242 333 13 0 chr1 11897784 11897859 -270295805 - L3 LINE CR1 -196 1381 1306 269 272 22 33 chr1 11897865 11897957 -270295707 + MIR SINE MIR 1 91 -171 203 333 95 0 chr1 11898985 11899069 -270294595 + L2 LINE L2 3137 3228 -44 200 315 65 11 chr1 11899121 11899213 -270294451 + L2 LINE L2 3175 3271 -1 490 218 49 35 chr1 11900289 11900431 -270293233 - L2 LINE L2 0 3313 3170 231 61 0 0 chr1 11900880 11900913 -270292751 + (CAGCC)n Simple_repeat Simple_repeat 1 33 0 239 289 36 0 chr1 11901248 11901331 -270292333 - MIR SINE MIR -85 177 92 182 150 25 0 chr1 11901437 11901477 -270292187 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 204 268 0 0 chr1 11902642 11902713 -270290951 + CT-rich Low_complexity Low_complexity 1 71 0 256 326 141 16 chr1 11903119 11903303 -270290361 + L2 LINE L2 3027 3233 -39 921 272 34 8 chr1 11903323 11903562 -270290102 - MIR SINE MIR -6 256 12 1745 88 65 54 chr1 11903614 11903908 -270289756 - AluSx SINE Alu -15 297 1 759 180 0 8 chr1 11903911 11904039 -270289625 - AluJo/FLAM SINE Alu -175 127 1 245 304 43 11 chr1 11904048 11904140 -270289524 - MIR SINE MIR -66 142 48 261 186 0 34 chr1 11904286 11904345 -270289319 + MIR SINE MIR 103 159 -103 287 325 73 0 chr1 11904858 11904981 -270288683 - MIR SINE MIR -64 198 67 195 75 19 57 chr1 11906372 11906425 -270287239 + (CCCCG)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr1 11906729 11906751 -270286913 + GC_rich Low_complexity Low_complexity 1 22 0 198 71 0 0 chr1 11906867 11906895 -270286769 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 196 267 99 30 chr1 11907122 11907223 -270286441 + MIR3 SINE MIR 6 113 -95 491 228 88 15 chr1 11907772 11907908 -270285756 - MIR SINE MIR -10 252 107 1033 123 116 0 chr1 11907928 11908083 -270285581 - AluSg/x SINE Alu -6 306 134 2341 74 0 3 chr1 11908083 11908381 -270285283 - AluSx SINE Alu -15 297 1 183 282 73 73 chr1 11908399 11908523 -270285141 - MIR SINE MIR -109 153 30 395 239 65 7 chr1 11908786 11908924 -270284740 + MER58C DNA MER1_type 69 214 -1 565 222 16 8 chr1 11908932 11909058 -270284606 - MIR SINE MIR -62 146 20 2100 124 3 3 chr1 11909076 11909382 -270284282 + AluSx SINE Alu 1 306 -6 250 242 77 22 chr1 11909382 11909473 -270284191 + MER58C DNA MER1_type 81 176 -39 486 259 37 7 chr1 11909503 11909638 -270284026 - MIR3 SINE MIR -50 158 20 341 306 134 13 chr1 11910540 11910697 -270282967 + MIR SINE MIR 33 208 -54 2225 83 33 0 chr1 11910724 11911026 -270282638 + AluSp SINE Alu 1 312 -1 207 0 0 0 chr1 11911101 11911124 -270282540 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1505 128 88 36 chr1 11911140 11911414 -270282250 - AluJo SINE Alu -24 288 1 960 180 58 24 chr1 11911417 11911623 -270282041 - MER58A DNA MER1_type -9 215 3 726 219 9 43 chr1 11911622 11911773 -270281891 + MER3 DNA MER1_type 1 145 -64 * 2225 89 10 0 chr1 11911773 11912077 -270281587 - AluSx SINE Alu -4 308 2 726 219 9 43 chr1 11912077 11912135 -270281529 + MER3 DNA MER1_type 145 203 -6 345 342 0 17 chr1 11912162 11912279 -270281385 - MIR SINE MIR -69 193 79 1468 182 33 23 chr1 11912399 11912701 -270280963 - AluJo SINE Alu -7 305 1 202 222 0 0 chr1 11914267 11914303 -270279361 + MIR SINE MIR 205 240 -22 1669 115 70 80 chr1 11914304 11914563 -270279101 + THE1C LTR MaLR 1 256 -119 2432 80 0 6 chr1 11914563 11914875 -270278789 - AluY SINE Alu 0 311 2 1669 115 70 80 chr1 11914875 11914989 -270278675 + THE1C LTR MaLR 256 370 -5 229 204 19 0 chr1 11915153 11915207 -270278457 - MER91A DNA MER1_type -138 58 4 1882 114 21 7 chr1 11915285 11915566 -270278098 - AluSx SINE Alu -17 295 11 200 197 0 66 chr1 11915888 11915949 -270277715 + G-rich Low_complexity Low_complexity 5 61 0 198 0 0 0 chr1 11916661 11916683 -270276981 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1249 132 5 20 chr1 11916683 11916831 -270276833 - AluJb SINE Alu -32 280 131 2154 67 20 91 chr1 11916831 11917173 -270276491 - AluYb8 SINE Alu 0 318 1 2309 89 0 0 chr1 11917173 11917477 -270276187 - AluSg SINE Alu -6 304 1 1249 132 5 20 chr1 11917477 11917524 -270276140 - AluJb SINE Alu -179 133 87 500 138 23 0 chr1 11917647 11917734 -270275930 - AluJ/FRAM SINE Alu 0 312 224 802 215 12 17 chr1 11917812 11917984 -270275680 - AluJo SINE Alu -56 256 86 2236 104 0 7 chr1 11917991 11918300 -270275364 - AluSg SINE Alu -3 307 1 2128 94 10 39 chr1 11918484 11918792 -270274872 + AluSq SINE Alu 1 299 -14 202 146 49 0 chr1 11919156 11919197 -270274467 - MIR SINE MIR -179 83 41 2372 83 0 0 chr1 11919429 11919729 -270273935 + AluY SINE Alu 1 300 -11 1022 153 6 0 chr1 11920020 11920183 -270273481 - FRAM SINE Alu -16 160 1 334 275 163 58 chr1 11920590 11920807 -270272857 + L2 LINE L2 2909 3170 -143 1981 116 10 10 chr1 11920807 11921101 -270272563 + AluSp SINE Alu 6 299 -14 334 275 163 58 chr1 11921101 11921196 -270272468 + L2 LINE L2 3170 3254 -59 377 274 0 26 chr1 11921227 11921350 -270272314 - L1MCa LINE L1 -1339 6983 1996 222 37 0 0 chr1 11921352 11921379 -270272285 + (CA)n Simple_repeat Simple_repeat 2 28 0 1328 94 6 0 chr1 11921379 11921549 -270272115 - AluSq SINE Alu -137 176 6 2382 64 0 3 chr1 11921549 11921846 -270271818 + AluY SINE Alu 2 297 -14 29 28 0 0 chr1 11922220 11922256 -270271408 + AT_rich Low_complexity Low_complexity 1 36 0 817 99 0 0 chr1 11922263 11922374 -270271290 - FLAM_C SINE Alu -32 111 1 190 271 0 57 chr1 11923811 11923881 -270269783 - MIR SINE MIR -80 182 117 2174 104 0 10 chr1 11923909 11924207 -270269457 - AluSx SINE Alu -17 295 1 227 279 0 0 chr1 11924313 11924374 -270269290 - L2 LINE L2 -4 3309 3249 2399 77 0 0 chr1 11925640 11925951 -270267713 + AluY SINE Alu 1 311 0 356 290 59 53 chr1 11927888 11928057 -270265607 + MER5B DNA MER1_type 6 175 -3 217 281 67 0 chr1 11928057 11928145 -270265519 - MIR SINE MIR -79 129 36 266 244 73 24 chr1 11928220 11928302 -270265362 + MIR SINE MIR 35 120 -88 2252 91 3 0 chr1 11929395 11929691 -270263973 + AluSg SINE Alu 1 297 -13 2105 120 13 0 chr1 11929750 11930049 -270263615 + AluSx SINE Alu 1 303 -9 302 274 60 0 chr1 11930213 11930297 -270263367 + MIR3 SINE MIR 73 161 -47 1155 177 57 11 chr1 11930324 11930513 -270263151 - Tigger5 DNA MER2_type -1 2322 2116 2141 83 0 0 chr1 11930513 11930820 -270262844 + AluSx SINE Alu 15 312 0 1155 177 57 11 chr1 11930820 11930895 -270262769 - Tigger5 DNA MER2_type -207 2116 2046 199 236 55 0 chr1 11930939 11930994 -270262670 - L2 LINE L2 -17 3255 3198 2162 99 0 7 chr1 11931151 11931444 -270262220 - AluSg SINE Alu -19 291 1 2546 58 0 0 chr1 11931603 11931913 -270261751 - AluSq SINE Alu -3 310 1 22 56 0 0 chr1 11932126 11932162 -270261502 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 11932685 11932707 -270260957 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 11933217 11933238 -270260426 + AT_rich Low_complexity Low_complexity 1 21 0 547 313 35 15 chr1 11933342 11933543 -270260121 - MIR SINE MIR 0 262 58 370 247 195 13 chr1 11933648 11933802 -270259862 - MIR SINE MIR 0 262 81 213 319 223 0 chr1 11933852 11933946 -270259718 - MIR3 SINE MIR -46 162 48 268 308 118 47 chr1 11934171 11934340 -270259324 + MER5A DNA MER1_type 7 187 -2 1318 88 0 84 chr1 11935044 11935282 -270258382 + L1PB2 LINE L1 5901 6118 -33 2270 76 3 17 chr1 11935303 11935605 -270258059 + AluSp SINE Alu 1 298 -15 193 284 189 0 chr1 11935712 11935786 -270257878 + MIR3 SINE MIR 117 204 -4 227 260 115 39 chr1 11936467 11936529 -270257135 + L2 LINE L2 3161 3236 -36 1939 151 0 22 chr1 11936529 11936848 -270256816 - AluJo SINE Alu 0 312 1 227 260 115 39 chr1 11936848 11936889 -270256775 + L2 LINE L2 3236 3272 0 423 203 112 87 chr1 11937116 11937293 -270256371 + MIR SINE MIR 47 217 -45 1870 164 17 0 chr1 11937293 11937591 -270256073 + AluJb SINE Alu 2 304 -8 423 203 112 87 chr1 11937591 11937635 -270256029 + MIR SINE MIR 217 258 -4 1343 164 134 11 chr1 11938058 11938320 -270255344 - AluSx SINE Alu -8 294 1 1329 199 66 68 chr1 11938442 11938673 -270254991 - L1MB7 LINE L1 -5 6179 5948 1954 142 3 22 chr1 11938673 11938850 -270254814 - AluJo SINE Alu -2 310 140 2046 141 0 0 chr1 11938850 11939155 -270254509 - AluSx SINE Alu -5 307 3 1954 142 3 22 chr1 11939155 11939293 -270254371 - AluJo SINE Alu -172 140 1 1329 199 66 68 chr1 11939293 11939502 -270254162 - L1MB7 LINE L1 -236 5948 5740 234 65 0 0 chr1 11939523 11939554 -270254110 - MIR SINE MIR -62 146 116 1431 244 135 24 chr1 11939772 11939895 -270253769 + L2 LINE L2 2567 2675 -638 2165 106 0 3 chr1 11939895 11940196 -270253468 + AluSx SINE Alu 1 300 -12 1431 244 135 24 chr1 11940196 11940301 -270253363 + L2 LINE L2 2675 2767 -546 3899 100 14 45 chr1 11940301 11940631 -270253033 + MER41A LTR ERV1 1 340 -214 1952 142 13 3 chr1 11940631 11940933 -270252731 + AluSx SINE Alu 1 305 -7 2138 102 14 0 chr1 11940933 11941227 -270252437 + AluSx SINE Alu 1 298 -14 3899 100 14 45 chr1 11941227 11941467 -270252197 + MER41A LTR ERV1 338 554 0 1431 244 135 24 chr1 11941467 11941909 -270251755 + L2 LINE L2 2767 3311 -2 276 53 0 0 chr1 11942541 11942579 -270251085 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr1 11943179 11943220 -270250444 + GC_rich Low_complexity Low_complexity 1 41 0 236 247 0 26 chr1 11943245 11943323 -270250341 + C-rich Low_complexity Low_complexity 1 75 0 364 280 20 10 chr1 11944422 11944522 -270249142 + MIR SINE MIR 85 185 -77 195 42 0 0 chr1 11944561 11944585 -270249079 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 212 240 0 20 chr1 11945816 11945866 -270247798 + L2 LINE L2 3262 3310 -3 231 312 14 0 chr1 11946113 11946195 -270247469 + MIR SINE MIR 37 120 -88 297 274 35 31 chr1 11946746 11946867 -270246797 + MIR3 SINE MIR 9 129 -102 1897 123 0 73 chr1 11946914 11947230 -270246434 + AluSx SINE Alu 1 293 -19 2294 83 7 0 chr1 11947923 11948224 -270245440 + AluSq SINE Alu 1 303 -10 1858 113 0 32 chr1 11948224 11948505 -270245159 + AluSc SINE Alu 33 306 -3 1191 143 0 0 chr1 11948505 11948680 -270244984 + AluSg/x SINE Alu 135 309 -3 331 191 16 0 chr1 11948710 11948773 -270244891 - MIR SINE MIR -120 142 79 193 333 0 0 chr1 11949045 11949105 -270244559 + L2 LINE L2 3132 3191 -81 1567 172 10 17 chr1 11950190 11950487 -270243177 + AluJb SINE Alu 2 296 -16 688 152 0 56 chr1 11951095 11951220 -270242444 - FLAM_A SINE Alu 0 142 25 2118 100 4 0 chr1 11951263 11951576 -270242088 + AluSx SINE Alu 1 314 0 2086 114 24 0 chr1 11951576 11951873 -270241791 + AluSg SINE Alu 3 306 -4 28 0 0 0 chr1 11952172 11952200 -270241464 + AT_rich Low_complexity Low_complexity 1 28 0 257 305 25 70 chr1 11952890 11953058 -270240606 + MIR SINE MIR 32 192 -67 218 261 9 0 chr1 11953674 11953785 -270239879 + (CA)n Simple_repeat Simple_repeat 1 112 0 429 221 10 10 chr1 11953804 11954100 -270239564 + (CA)n Simple_repeat Simple_repeat 1 296 0 229 243 12 18 chr1 11954154 11954323 -270239341 + (CA)n Simple_repeat Simple_repeat 1 168 0 2127 107 20 0 chr1 11954362 11954660 -270239004 - AluSx SINE Alu -8 304 1 398 292 94 64 chr1 11954714 11955239 -270238425 - L2 LINE L2 -27 3245 2712 483 292 106 6 chr1 11957233 11957394 -270236270 + MIR SINE MIR 68 244 -18 1035 166 46 37 chr1 11957574 11957791 -270235873 - MER20 DNA MER1_type 0 219 1 2200 70 42 0 chr1 11958549 11958836 -270234828 + AluY SINE Alu 1 299 -12 225 224 0 0 chr1 11958866 11958915 -270234749 - L3b LINE CR1 -197 1386 1338 522 262 110 31 chr1 11958981 11959172 -270234492 + MIR SINE MIR 12 217 -45 186 316 42 21 chr1 11959850 11959945 -270233719 + MIR3 SINE MIR 1 97 -111 1824 122 4 0 chr1 11959947 11960202 -270233462 + AluSx SINE Alu 1 256 -56 642 358 10 0 chr1 11960205 11960406 -270233258 + MIR SINE MIR 48 250 -12 212 135 0 0 chr1 11960529 11960566 -270233098 + L2 LINE L2 3019 3055 -217 220 278 222 0 chr1 11961104 11961230 -270232434 - MIR3 SINE MIR -21 187 34 273 308 7 35 chr1 11961508 11961522 -270232142 + L1MC4 LINE L1 7895 7908 -134 2290 100 0 0 chr1 11961522 11961823 -270231841 + AluSg SINE Alu 1 301 -9 1885 157 0 10 chr1 11961827 11962127 -270231537 + AluJb SINE Alu 1 297 -15 273 308 7 35 chr1 11962127 11962250 -270231414 + L1MC4 LINE L1 7911 8033 -9 2197 79 3 30 chr1 11962250 11962553 -270231111 + AluY SINE Alu 1 295 -16 1006 59 7 30 chr1 11962623 11962758 -270230906 + AluSq/x SINE Alu 1 132 -180 2032 114 0 13 chr1 11964234 11964533 -270229131 + AluSq SINE Alu 1 295 -18 2305 86 7 0 chr1 11964537 11964829 -270228835 + AluSp SINE Alu 3 296 -17 291 248 205 0 chr1 11964848 11964965 -270228699 - MIR SINE MIR -120 142 2 1681 148 0 74 chr1 11965224 11965376 -270228288 + AluJo SINE Alu 1 118 -194 2053 102 51 0 chr1 11965376 11965669 -270227995 + AluSg1 SINE Alu 1 308 -1 1681 148 0 74 chr1 11965669 11965840 -270227824 + AluJo SINE Alu 118 300 -12 340 240 13 0 chr1 11966344 11966419 -270227245 + MIR3 SINE MIR 112 187 -21 469 252 102 7 chr1 11967330 11967477 -270226187 - MIR SINE MIR -32 230 70 528 210 30 0 chr1 11967493 11967593 -270226071 - AluSg/x SINE Alu -15 295 193 198 231 141 13 chr1 12017834 12017912 -270175752 + MIR SINE MIR 58 145 -63 1273 110 0 0 chr1 12018070 12018243 -270175421 + AluSg/x SINE Alu 134 306 -6 457 247 31 86 chr1 12018259 12018421 -270175243 + MER5B DNA MER1_type 9 161 -17 238 315 0 0 chr1 12018737 12018826 -270174838 + G-rich Low_complexity Low_complexity 3 91 0 690 284 127 4 chr1 12019247 12019476 -270174188 + MIR SINE MIR 5 261 -1 226 339 71 9 chr1 12019473 12019585 -270174079 + MIR SINE MIR 5 123 -139 * 807 205 41 0 chr1 12020001 12020172 -270173492 + MLT1F1 LTR MaLR 390 567 0 549 252 52 7 chr1 12020401 12020559 -270173105 + MIR SINE MIR 9 167 -62 2226 90 20 0 chr1 12020924 12021224 -270172440 - AluSx SINE Alu -6 306 1 388 283 43 7 chr1 12021238 12021376 -270172288 - MLT1E LTR MaLR -431 162 20 390 261 62 71 chr1 12021408 12021555 -270172109 - Charlie8 DNA MER1_type -2150 267 121 2347 82 0 0 chr1 12021555 12021858 -270171806 + AluY SINE Alu 1 303 -8 390 261 62 71 chr1 12021858 12021921 -270171743 - Charlie8 DNA MER1_type -2296 121 59 2164 110 10 3 chr1 12022565 12022873 -270170791 + AluSx SINE Alu 1 310 -2 2426 71 3 0 chr1 12023165 12023473 -270170191 - AluSp SINE Alu -4 309 1 2138 121 10 0 chr1 12023773 12024071 -270169593 - AluSq SINE Alu -12 301 1 2120 110 7 13 chr1 12025639 12025949 -270167715 - AluSx SINE Alu -4 308 1 366 260 87 19 chr1 12025956 12026060 -270167604 - L1ME4a LINE L1 0 6121 6011 1790 149 13 23 chr1 12026344 12026653 -270167011 - AluJo SINE Alu -3 309 4 281 264 28 14 chr1 12028369 12028441 -270165223 + MER5A DNA MER1_type 85 157 -32 234 156 0 0 chr1 12030810 12030855 -270162809 + (CA)n Simple_repeat Simple_repeat 2 46 0 182 319 91 54 chr1 12031504 12031802 -270161862 + L2 LINE L2 2550 2858 -456 495 272 106 56 chr1 12031828 12032148 -270161516 + L2 LINE L2 2932 3267 -5 255 340 70 0 chr1 12032725 12032825 -270160839 - MIR SINE MIR -131 131 25 291 224 267 0 chr1 12032922 12033038 -270160626 - MIR SINE MIR -22 240 94 2295 101 0 0 chr1 12033051 12033358 -270160306 - AluSg SINE Alu -3 307 1 1915 128 0 0 chr1 12033362 12033643 -270160021 - AluJb SINE Alu -1 311 31 626 186 119 0 chr1 12035428 12035546 -270158118 - FLAM_A SINE Alu -1 132 1 357 313 22 44 chr1 12035654 12035836 -270157828 + MER5B DNA MER1_type 1 178 0 324 333 94 38 chr1 12036616 12036829 -270156835 + L3 LINE CR1 1006 1238 -339 2227 107 10 0 chr1 12036829 12037138 -270156526 + AluSq SINE Alu 1 312 -1 324 333 94 38 chr1 12037138 12037191 -270156473 + L3 LINE CR1 1238 1287 -290 1663 156 3 62 chr1 12037205 12037525 -270156139 - AluJo SINE Alu -11 301 1 190 233 0 0 chr1 12037542 12037585 -270156079 + L3 LINE CR1 1286 1328 -249 260 314 0 12 chr1 12037664 12037750 -270155914 + L3 LINE CR1 1486 1570 -7 651 157 165 0 chr1 12038193 12038308 -270155356 - AluJo SINE Alu -177 135 2 2252 93 0 10 chr1 12038641 12038954 -270154710 - AluSg SINE Alu 0 310 1 2173 107 0 0 chr1 12039543 12039842 -270153822 - AluSx SINE Alu -11 301 3 549 246 15 8 chr1 12041410 12041544 -270152120 + MIR SINE MIR 34 168 -94 2204 109 7 0 chr1 12041557 12041860 -270151804 + AluSx SINE Alu 2 306 -6 184 276 0 35 chr1 12041908 12041966 -270151698 + L2 LINE L2 3200 3255 -17 741 117 0 0 chr1 12043992 12044095 -270149569 + FLAM_A SINE Alu 29 131 -11 2221 95 0 0 chr1 12044095 12044391 -270149273 + AluSq SINE Alu 18 313 0 196 353 86 9 chr1 12045067 12045183 -270148481 + L2 LINE L2 3098 3222 -50 366 352 86 21 chr1 12047641 12047874 -270145790 - L1ME4a LINE L1 -59 6062 5815 244 316 39 39 chr1 12047957 12048112 -270145552 - L1MC5 LINE L1 -32 7929 7775 513 32 0 0 chr1 12048122 12048185 -270145479 + (TG)n Simple_repeat Simple_repeat 2 64 0 663 203 15 0 chr1 12048185 12048307 -270145357 - AluJo SINE Alu -184 128 2 829 223 94 30 chr1 12048310 12048705 -270144959 - L1MC5 LINE L1 -173 7788 7369 2093 117 9 19 chr1 12048757 12049073 -270144591 - AluSq SINE Alu 0 313 1 1998 142 0 16 chr1 12049361 12049672 -270143992 - AluSx SINE Alu -6 306 1 798 163 7 35 chr1 12050703 12050844 -270142820 + AluJo SINE Alu 6 142 -170 1570 163 17 7 chr1 12050844 12051133 -270142531 + AluJo SINE Alu 1 292 -20 1071 161 30 94 chr1 12051175 12051299 -270142365 - L1MB8 LINE L1 -1 6177 6077 2299 81 3 0 chr1 12051299 12051596 -270142068 - AluSp SINE Alu -15 298 1 1071 161 30 94 chr1 12051596 12051738 -270141926 - L1MB8 LINE L1 -101 6077 5928 841 161 0 0 chr1 12051909 12052039 -270141625 + FRAM SINE Alu 28 157 -19 2588 184 50 10 chr1 12052044 12052544 -270141120 - MER21B LTR ERV1 -255 608 89 486 33 0 0 chr1 12052571 12052631 -270141033 + (TG)n Simple_repeat Simple_repeat 2 61 0 3041 151 125 9 chr1 12052633 12053210 -270140454 + LTR48B LTR ERV1 1 644 0 2129 121 0 0 chr1 12053311 12053608 -270140056 - AluSx SINE Alu -15 297 1 372 296 66 26 chr1 12053795 12053947 -270139717 - L1MC4a LINE L1 -1902 5906 5749 2012 113 13 13 chr1 12054163 12054465 -270139199 - AluSx SINE Alu -10 302 1 2511 40 0 3 chr1 12054668 12054967 -270138697 + AluY SINE Alu 1 298 -13 182 235 0 0 chr1 12055243 12055277 -270138387 - MER5A DNA MER1_type -8 181 148 2226 106 3 0 chr1 12055308 12055611 -270138053 - AluSx SINE Alu -8 304 1 193 276 0 53 chr1 12055611 12055687 -270137977 - MER5A DNA MER1_type -114 75 4 695 150 94 0 chr1 12055949 12056076 -270137588 + Tigger1 DNA MER2_type 1 139 -2279 * 1288 139 9 0 chr1 12056072 12056288 -270137376 + Tigger1 DNA MER2_type 2200 2417 -1 867 164 0 20 chr1 12057002 12057154 -270136510 - AluJb SINE Alu -8 304 156 951 111 0 15 chr1 12057896 12058031 -270135633 + FLAM_C SINE Alu 1 133 0 1204 143 80 27 chr1 12058182 12058406 -270135258 + MER46A DNA MER2_type 1 236 0 791 177 0 0 chr1 12058706 12058830 -270134834 + FLAM_A SINE Alu 1 124 -9 928 113 81 6 chr1 12058943 12059103 -270134561 - MER30 DNA MER1_type -58 172 1 478 313 54 19 chr1 12059612 12059871 -270133793 + L1ME LINE L1 4475 4742 -1404 486 140 330 0 chr1 12060112 12060212 -270133452 + FRAM SINE Alu 22 154 -22 411 304 60 75 chr1 12060212 12060401 -270133263 + L1ME LINE L1 4912 5102 -1044 2270 83 0 3 chr1 12060401 12060702 -270132962 + AluY SINE Alu 1 300 -11 2208 109 6 3 chr1 12060709 12061020 -270132644 + AluSq SINE Alu 1 312 -1 411 304 60 75 chr1 12061020 12061157 -270132507 + L1ME LINE L1 5108 5241 -905 254 209 34 101 chr1 12061169 12061192 -270132472 + L1ME LINE L1 5254 5277 -1023 2003 110 10 3 chr1 12061192 12061483 -270132181 + AluSx SINE Alu 1 293 -19 254 209 34 101 chr1 12061483 12061607 -270132057 + L1ME LINE L1 5277 5391 -909 229 231 204 9 chr1 12061642 12061750 -270131914 + L1ME LINE L1 5663 5791 -330 235 271 10 31 chr1 12061808 12061904 -270131760 + L1ME LINE L1 5811 5904 -266 1623 184 57 0 chr1 12062176 12062459 -270131205 - AluJb SINE Alu -13 299 1 23 0 0 0 chr1 12062470 12062493 -270131171 + AT_rich Low_complexity Low_complexity 1 23 0 957 178 6 0 chr1 12062932 12063095 -270130569 + L1PA16 LINE L1 5994 6157 -9 1779 114 0 69 chr1 12063125 12063415 -270130249 + AluSp SINE Alu 35 304 -9 367 257 29 0 chr1 12063416 12063521 -270130143 + MER5A DNA MER1_type 66 173 -16 492 239 26 26 chr1 12063996 12064200 -270129464 - MER58 DNA MER1_type -6 2414 6 426 241 51 29 chr1 12064897 12065034 -270128630 - MIR SINE MIR -44 218 79 2061 109 0 32 chr1 12065537 12065849 -270127815 - AluSx SINE Alu -10 302 1 305 182 15 0 chr1 12065985 12066051 -270127613 - L1PB1 LINE L1 0 6151 6085 1813 106 109 7 chr1 12067347 12067622 -270126042 - AluSg SINE Alu -7 303 1 1373 188 53 44 chr1 12070205 12070546 -270123118 - MER2 DNA MER2_type 0 344 1 299 25 25 0 chr1 12070641 12070681 -270122983 + (TA)n Simple_repeat Simple_repeat 2 42 0 377 69 0 17 chr1 12070681 12070739 -270122925 + (CA)n Simple_repeat Simple_repeat 2 58 0 2133 113 10 0 chr1 12070746 12071047 -270122617 - AluSx SINE Alu -8 304 1 2028 134 7 0 chr1 12071064 12071371 -270122293 - AluSg SINE Alu -1 309 1 568 165 149 0 chr1 12071371 12071492 -270122172 + MER58C DNA MER1_type 77 215 0 1547 189 61 0 chr1 12071603 12071883 -270121781 - AluJo SINE Alu -15 297 1 410 287 87 13 chr1 12071952 12072102 -270121562 - MIR SINE MIR -26 236 76 337 265 185 2 chr1 12072117 12072256 -270121408 - MIR SINE MIR -65 143 5 375 203 0 0 chr1 12073953 12074032 -270119632 + (TG)n Simple_repeat Simple_repeat 2 80 0 557 237 0 9 chr1 12074991 12075105 -270118559 - MER58B DNA MER1_type 0 341 229 1874 159 3 10 chr1 12075177 12075491 -270118173 - AluJo SINE Alu 0 312 1 298 359 36 10 chr1 12075565 12075757 -270117907 - L2 LINE L2 -183 3089 2893 1061 250 105 15 chr1 12077559 12077951 -270115713 - MLT1C LTR MaLR -34 433 7 228 339 24 39 chr1 12077998 12078125 -270115539 - MIR SINE MIR -115 147 23 2004 120 0 0 chr1 12079168 12079478 -270114186 - AluJb SINE Alu 0 310 1 2205 61 7 4 chr1 12083080 12083384 -270110280 - AluY SINE Alu 0 305 1 202 383 26 0 chr1 12084598 12084713 -270108951 - L2 LINE L2 -255 3017 2900 1899 157 3 0 chr1 12085007 12085301 -270108363 - AluJb SINE Alu -17 295 1 2453 47 0 3 chr1 12086235 12086536 -270107128 - AluY SINE Alu -11 300 1 2220 82 7 3 chr1 12086536 12086830 -270106834 - AluSc SINE Alu -14 295 1 230 232 7 167 chr1 12088853 12088935 -270104729 + MIR SINE MIR 85 131 -131 1945 147 0 0 chr1 12088935 12089247 -270104417 + AluSx SINE Alu 1 312 0 230 232 7 167 chr1 12089247 12089313 -270104351 + MIR SINE MIR 131 206 -56 480 339 59 5 chr1 12089366 12089587 -270104077 - MIR SINE MIR -14 248 16 1544 180 46 3 chr1 12090657 12090940 -270102724 + AluJb SINE Alu 1 295 -17 760 178 8 0 chr1 12090940 12091069 -270102595 + FLAM_C SINE Alu 2 131 -2 1260 238 130 42 chr1 12091088 12091577 -270102087 - MLT1F1 LTR MaLR -26 541 12 1571 86 0 0 chr1 12091626 12091823 -270101841 + AluSx SINE Alu 1 197 -115 771 237 122 100 chr1 12091865 12092099 -270101565 - LTR16C LTR ERVL 0 491 264 1376 169 55 22 chr1 12092099 12092405 -270101259 - AluJb SINE Alu 0 316 2 771 237 122 100 chr1 12092405 12092434 -270101230 - LTR16C LTR ERVL -227 264 237 1778 158 0 38 chr1 12092434 12092751 -270100913 + AluJo SINE Alu 1 305 -7 771 237 122 100 chr1 12092751 12092895 -270100769 - LTR16C LTR ERVL -254 237 73 2056 79 7 4 chr1 12093257 12093566 -270100098 + AluY SINE Alu 5 314 0 2091 129 0 6 chr1 12093824 12094135 -270099529 + AluSx SINE Alu 3 311 -1 1976 133 13 28 chr1 12094147 12094464 -270099200 + AluJb SINE Alu 1 312 0 467 226 152 56 chr1 12095044 12095170 -270098494 + MIR SINE MIR 39 191 -71 2166 113 3 0 chr1 12095170 12095472 -270098192 + AluSx SINE Alu 1 303 -9 467 226 152 56 chr1 12095472 12095549 -270098115 + MIR SINE MIR 191 259 -3 1687 165 3 34 chr1 12095643 12095965 -270097699 - AluJb SINE Alu 0 312 1 2191 104 0 10 chr1 12095986 12096284 -270097380 - AluSq SINE Alu -18 295 1 332 251 43 129 chr1 12096467 12096630 -270097034 + MIR SINE MIR 21 169 -93 287 99 0 0 chr1 12097701 12097755 -270095909 + MIR SINE MIR 101 153 -62 309 26 0 0 chr1 12098771 12098809 -270094855 + (CTG)n Simple_repeat Simple_repeat 3 40 0 1843 86 47 0 chr1 12099791 12100046 -270093618 + AluY SINE Alu 1 267 -44 408 40 0 0 chr1 12100050 12100100 -270093564 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 291 283 30 102 chr1 12100466 12100632 -270093032 - MIR SINE MIR -96 166 13 321 26 0 0 chr1 12100875 12100913 -270092751 + (TG)n Simple_repeat Simple_repeat 1 38 0 319 278 7 69 chr1 12101511 12101590 -270092074 + MIR SINE MIR 124 192 -70 2946 186 4 21 chr1 12101590 12102102 -270091562 + MLT1D LTR MaLR 1 503 -2 319 278 7 69 chr1 12102102 12102166 -270091498 + MIR SINE MIR 192 258 -4 350 242 228 0 chr1 12102278 12102427 -270091237 + MIR SINE MIR 10 192 -70 277 314 65 72 chr1 12102454 12102760 -270090904 - L2 LINE L2 -52 3220 2917 2210 107 3 0 chr1 12103048 12103356 -270090308 - AluSx SINE Alu -3 309 1 1864 132 0 40 chr1 12103501 12103804 -270089860 - AluJb SINE Alu -21 291 1 360 0 0 0 chr1 12103969 12104009 -270089655 + (TG)n Simple_repeat Simple_repeat 2 41 0 1268 159 56 106 chr1 12104147 12104478 -270089186 + AluJo SINE Alu 6 312 0 203 185 0 19 chr1 12104552 12104606 -270089058 + CT-rich Low_complexity Low_complexity 1 53 0 534 224 12 73 chr1 12104703 12104868 -270088796 + MLT1K LTR MaLR 432 586 -2 1929 114 4 14 chr1 12105172 12105453 -270088211 - AluSx SINE Alu -34 278 1 2125 136 21 26 chr1 12105557 12105771 -270087893 - MLT1B LTR MaLR 0 390 176 2332 96 0 0 chr1 12105771 12106074 -270087590 - AluSp SINE Alu -10 303 1 2125 136 21 26 chr1 12106074 12106141 -270087523 - MLT1B LTR MaLR -214 176 110 451 143 26 0 chr1 12106141 12106218 -270087446 - MADE1 DNA Mariner -1 79 1 2125 136 21 26 chr1 12106218 12106280 -270087384 - MLT1B LTR MaLR -280 110 46 1812 160 3 0 chr1 12106280 12106568 -270087096 - AluJo SINE Alu -23 289 1 2125 136 21 26 chr1 12106568 12106605 -270087059 - MLT1B LTR MaLR -344 46 10 618 269 186 44 chr1 12106680 12107078 -270086586 - MLT1H1 LTR MaLR 0 555 215 2276 82 3 19 chr1 12107078 12107395 -270086269 + AluSp SINE Alu 1 312 -1 1253 170 170 23 chr1 12107405 12107664 -270086000 + AluJo SINE Alu 1 297 -5 618 269 186 44 chr1 12107664 12107731 -270085933 - MLT1H1 LTR MaLR -347 208 75 1984 133 0 9 chr1 12108028 12108343 -270085321 - AluJb SINE Alu 0 312 1 194 243 157 0 chr1 12108594 12108664 -270085000 - MIR SINE MIR -53 209 129 292 250 36 0 chr1 12108693 12108777 -270084887 + LTR33 LTR ERVL 2 88 -433 1781 177 3 3 chr1 12109012 12109323 -270084341 - AluJo SINE Alu -1 311 1 326 250 42 10 chr1 12109340 12109436 -270084228 + LTR33 LTR ERVL 422 520 -1 227 186 0 0 chr1 12109440 12109483 -270084181 + (CACCAT)n Simple_repeat Simple_repeat 5 47 0 1053 236 91 86 chr1 12110102 12110278 -270083386 - L2 LINE L2 0 3313 3140 2005 105 31 0 chr1 12110278 12110564 -270083100 + AluSx SINE Alu 1 295 -17 1053 236 91 86 chr1 12110564 12110706 -270082958 - L2 LINE L2 -173 3140 3000 1669 152 7 14 chr1 12110706 12110995 -270082669 + AluJb SINE Alu 1 287 -25 216 0 0 0 chr1 12110995 12111019 -270082645 + (TA)n Simple_repeat Simple_repeat 2 25 0 1053 236 91 86 chr1 12111019 12111030 -270082634 - L2 LINE L2 -313 3000 2991 693 113 113 48 chr1 12111030 12111154 -270082510 + FLAM_C SINE Alu 1 132 -1 1053 236 91 86 chr1 12111154 12111392 -270082272 - L2 LINE L2 -322 2991 2750 2001 130 0 0 chr1 12111392 12111698 -270081966 - AluSg SINE Alu 0 306 1 1053 236 91 86 chr1 12111698 12111741 -270081923 - L2 LINE L2 -563 2750 2709 1068 194 134 0 chr1 12111809 12112062 -270081602 + LTR50 LTR ERVL 504 790 -5 1578 130 0 97 chr1 12112108 12112407 -270081257 - AluJo SINE Alu -37 275 6 1344 245 61 48 chr1 12112455 12112912 -270080752 - MLT1C LTR MaLR 0 467 5 1926 110 0 98 chr1 12113101 12113436 -270080228 - AluJb SINE Alu 0 302 1 1635 221 81 18 chr1 12114564 12114998 -270078666 + MLT1C LTR MaLR 3 463 -4 852 240 125 49 chr1 12115178 12115568 -270078096 + MLT1G1 LTR MaLR 2 449 -100 2026 117 7 7 chr1 12115568 12115868 -270077796 + AluSq SINE Alu 1 300 -13 852 240 125 49 chr1 12115868 12115978 -270077686 + MLT1G1 LTR MaLR 449 549 0 458 229 57 0 chr1 12116027 12116132 -270077532 - L2 LINE L2 -1 3312 3202 189 0 0 0 chr1 12116167 12116188 -270077476 + (CTAAT)n Simple_repeat Simple_repeat 2 22 0 2051 119 0 0 chr1 12116616 12116901 -270076763 + AluSx SINE Alu 1 285 -27 303 93 0 0 chr1 12116902 12116945 -270076719 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 169 0 0 chr1 12116951 12117034 -270076630 + (TG)n Simple_repeat Simple_repeat 2 84 0 189 0 0 0 chr1 12117348 12117369 -270076295 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1787 141 0 7 chr1 12117371 12117655 -270076009 - AluJo SINE Alu -30 282 1 223 178 22 0 chr1 12120786 12120831 -270072833 + CT-rich Low_complexity Low_complexity 3 48 0 215 315 130 0 chr1 12121022 12121130 -270072534 - MIR SINE MIR -138 124 3 240 59 0 0 chr1 12121258 12121292 -270072372 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 185 170 0 64 chr1 12121506 12121553 -270072111 - L2 LINE L2 -6 3266 3223 237 279 81 72 chr1 12121569 12121775 -270071889 - L2 LINE L2 -198 3074 2864 1785 191 75 85 chr1 12121775 12122282 -270071382 + MLT1D LTR MaLR 4 505 0 237 279 81 72 chr1 12122282 12122297 -270071367 - L2 LINE L2 -408 2864 2851 694 135 0 0 chr1 12122538 12122642 -270071022 + AluJb SINE Alu 207 310 -2 23 0 0 0 chr1 12122678 12122701 -270070963 + AT_rich Low_complexity Low_complexity 1 23 0 2416 70 0 6 chr1 12124025 12124338 -270069326 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 12124339 12124361 -270069303 + AT_rich Low_complexity Low_complexity 1 22 0 1892 155 7 3 chr1 12124410 12124733 -270068931 + AluSx SINE Alu 2 325 0 915 72 0 85 chr1 12125213 12125366 -270068298 - FLAM_C SINE Alu 0 143 4 183 322 186 0 chr1 12125930 12126048 -270067616 - L2 LINE L2 -42 3271 3132 2024 125 3 7 chr1 12126558 12126861 -270066803 + AluSx SINE Alu 1 302 -10 287 286 0 0 chr1 12127850 12127927 -270065737 - MIR SINE MIR -45 217 141 2170 115 0 13 chr1 12127969 12128282 -270065382 - AluSx SINE Alu -3 309 1 217 260 0 0 chr1 12128454 12128504 -270065160 - MIR SINE MIR -92 116 67 2069 129 0 22 chr1 12129365 12129683 -270063981 + AluSx SINE Alu 1 311 -1 261 203 0 95 chr1 12129702 12129776 -270063888 - Charlie8 DNA MER1_type -1002 1415 1349 2723 188 13 6 chr1 12129782 12130318 -270063346 + LTR5 LTR ERVK 1 540 -429 2170 66 59 0 chr1 12130328 12130615 -270063049 + AluY SINE Alu 1 304 -7 1227 212 25 96 chr1 12130615 12131063 -270062601 + LTR5 LTR ERVK 540 955 -14 361 210 64 95 chr1 12131395 12131544 -270062120 - MIR3 SINE MIR -63 145 55 1650 160 26 13 chr1 12131544 12131851 -270061813 + AluJo SINE Alu 2 312 0 361 210 64 95 chr1 12131851 12131896 -270061768 - MIR3 SINE MIR -153 55 10 255 302 52 35 chr1 12131916 12132032 -270061632 + HERVL66 LTR ERVL 1442 1559 -2770 2002 125 7 0 chr1 12132727 12133023 -270060641 - AluSx SINE Alu -14 298 1 733 185 7 22 chr1 12133042 12133177 -270060487 - FLAM_A SINE Alu 0 133 1 590 285 36 6 chr1 12133585 12133750 -270059914 - MIR SINE MIR -69 193 24 1191 132 0 6 chr1 12134262 12134715 -270058949 + (TGGA)n Simple_repeat Simple_repeat 1 450 0 342 202 124 11 chr1 12135322 12135411 -270058253 + MIR SINE MIR 32 130 -132 69 13 0 0 chr1 12135477 12135553 -270058111 + AT_rich Low_complexity Low_complexity 1 76 0 725 143 0 53 chr1 12135555 12135688 -270057976 + FLAM_C SINE Alu 1 126 -7 2248 104 3 0 chr1 12135693 12136002 -270057662 + AluSg SINE Alu 1 310 0 2060 98 51 0 chr1 12136029 12136324 -270057340 + AluSx SINE Alu 3 312 0 230 283 0 0 chr1 12136388 12136441 -270057223 - Charlie8 DNA MER1_type -2364 53 1 824 119 0 60 chr1 12136469 12136603 -270057061 + FLAM_A SINE Alu 1 126 -7 2350 90 3 0 chr1 12136614 12136924 -270056740 + AluY SINE Alu 1 311 0 446 293 14 117 chr1 12137034 12137386 -270056278 + L1MC5 LINE L1 7302 7617 -344 263 270 35 58 chr1 12137386 12137560 -270056104 + L1MEc LINE L1 1500 1669 -4727 345 113 32 0 chr1 12137576 12137638 -270056026 + HY3 scRNA scRNA 37 100 -1 2533 45 0 3 chr1 12137663 12137974 -270055690 + AluY SINE Alu 1 310 -1 209 200 0 0 chr1 12139672 12139707 -270053957 + polypyrimidine Low_complexity Low_complexity 2 36 0 2155 102 0 3 chr1 12139753 12140048 -270053616 + AluY SINE Alu 1 294 -17 1077 117 32 0 chr1 12140053 12140207 -270053457 + AluSg/x SINE Alu 138 296 -16 472 309 42 75 chr1 12140214 12140314 -270053350 - L1ME LINE L1 -426 5695 5593 1929 149 0 0 chr1 12140314 12140602 -270053062 + AluSx SINE Alu 1 288 -24 472 309 42 75 chr1 12140602 12140892 -270052772 - L1ME LINE L1 -528 5593 5313 825 174 0 0 chr1 12140923 12141055 -270052609 - FLAM_C SINE Alu 0 133 2 1763 148 7 10 chr1 12141213 12141510 -270052154 + AluJb SINE Alu 1 296 -16 1731 115 93 0 chr1 12141510 12141788 -270051876 + AluSx SINE Alu 1 304 -8 2442 81 0 0 chr1 12141789 12142098 -270051566 + AluSg SINE Alu 1 309 -1 651 164 72 12 chr1 12142121 12142286 -270051378 + LTR24B LTR ERV1 277 569 0 529 318 11 49 chr1 12142286 12142550 -270051114 + LTR24B-int LTR ERV1 1 254 -4869 2064 123 0 3 chr1 12142550 12142850 -270050814 + AluSx SINE Alu 1 299 -13 2170 129 0 0 chr1 12142856 12143167 -270050497 + AluSx SINE Alu 2 312 0 261 0 0 0 chr1 12143199 12143228 -270050436 + (CA)n Simple_repeat Simple_repeat 2 30 0 819 142 47 0 chr1 12143259 12143386 -270050278 + AluJ SINE Alu 2 134 -178 276 269 93 0 chr1 12143418 12143526 -270050138 + L1MC4a LINE L1 6036 6153 -1655 1103 178 0 0 chr1 12143530 12143715 -270049949 + AluJ SINE Alu 119 303 -9 352 259 93 76 chr1 12143724 12143802 -270049862 + L1M4 LINE L1 3776 3851 -2295 2024 132 3 0 chr1 12143802 12144098 -270049566 + AluSx SINE Alu 3 299 -13 352 259 93 76 chr1 12144098 12144269 -270049395 + L1M4 LINE L1 3851 4033 -2113 2118 123 7 0 chr1 12144269 12144571 -270049093 + AluSc SINE Alu 1 304 -5 352 259 93 76 chr1 12144571 12144621 -270049043 + L1M4 LINE L1 4033 4081 -2065 790 187 0 8 chr1 12144623 12144757 -270048907 + FLAM_C SINE Alu 1 133 0 237 170 0 0 chr1 12144764 12144811 -270048853 + Alu SINE Alu 87 133 -169 22 0 0 0 chr1 12144811 12144833 -270048831 + AT_rich Low_complexity Low_complexity 1 22 0 1267 245 47 1 chr1 12144877 12145263 -270048401 - L1MB5 LINE L1 -79 6105 5663 2302 77 10 0 chr1 12145268 12145566 -270048098 - AluSx SINE Alu -11 301 1 224 235 20 0 chr1 12145675 12145726 -270047938 + CT-rich Low_complexity Low_complexity 1 52 0 1639 171 90 38 chr1 12145783 12146129 -270047535 - MLT1A1 LTR MaLR 0 365 2 2206 102 0 0 chr1 12146374 12146678 -270046986 - AluSx SINE Alu -8 304 1 213 248 205 0 chr1 12146766 12146883 -270046781 - L2 LINE L2 -2128 1186 1046 378 85 41 0 chr1 12147009 12147080 -270046584 - AluJ/FLAM SINE Alu -245 57 1 349 230 80 0 chr1 12147331 12147431 -270046233 - MER5A DNA MER1_type 0 189 82 760 168 8 0 chr1 12147446 12147571 -270046093 - FLAM_C SINE Alu -7 126 1 21 36 0 0 chr1 12147574 12147602 -270046062 + AT_rich Low_complexity Low_complexity 1 28 0 261 71 0 0 chr1 12147650 12147693 -270045971 - HSMAR1 DNA Mariner -37 43 1 813 83 0 42 chr1 12148068 12148188 -270045476 + U5 snRNA snRNA 1 115 -1 1334 159 19 41 chr1 12148442 12148713 -270044951 + MER1B DNA MER1_type 75 339 0 383 201 190 4 chr1 12148906 12149060 -270044604 - MLT1J LTR MaLR -310 167 1 2391 56 0 34 chr1 12149103 12149423 -270044241 + AluSx SINE Alu 1 309 -3 228 170 0 0 chr1 12149460 12149513 -270044151 + (CCCCG)n Simple_repeat Simple_repeat 5 57 0 774 75 0 50 chr1 12149723 12149843 -270043821 - U5 snRNA snRNA -1 115 2 225 104 83 0 chr1 12150168 12150216 -270043448 - L1MA3 LINE L1 0 6305 6254 2336 64 0 3 chr1 12150227 12150522 -270043142 - AluSx SINE Alu -18 294 1 1933 215 46 73 chr1 12150685 12151226 -270042438 - MLT2B3 LTR ERVL -7 547 20 1813 81 0 12 chr1 12151226 12151472 -270042192 - AluSg/x SINE Alu 0 312 70 1933 215 46 73 chr1 12151472 12151492 -270042172 - MLT2B3 LTR ERVL -534 20 1 206 324 15 0 chr1 12151579 12151647 -270042017 + MIR3 SINE MIR 87 155 -53 1791 126 40 11 chr1 12151832 12152110 -270041554 + AluJo SINE Alu 5 290 -22 349 268 101 53 chr1 12152167 12152329 -270041335 + L2 LINE L2 2970 3148 -124 4339 176 44 54 chr1 12152329 12153293 -270040371 - LTR13 LTR ERVK 0 954 1 349 268 101 53 chr1 12153293 12153358 -270040306 + L2 LINE L2 3148 3208 -64 374 296 94 19 chr1 12153609 12153768 -270039896 + MIR SINE MIR 12 182 -80 837 291 130 23 chr1 12153774 12154259 -270039405 + MLT1K LTR MaLR 19 555 -33 1797 179 0 13 chr1 12154261 12154574 -270039090 - AluJo SINE Alu -3 309 1 1882 115 45 10 chr1 12154618 12154906 -270038758 + AluJb SINE Alu 1 298 -14 1630 193 21 56 chr1 12154990 12155320 -270038344 - MLT1A1 LTR MaLR -1 364 47 1694 174 30 13 chr1 12155320 12155619 -270038045 + AluJb SINE Alu 1 304 -8 1630 193 21 56 chr1 12155619 12155661 -270038003 - MLT1A1 LTR MaLR -318 47 5 2158 149 147 29 chr1 12155781 12155848 -270037816 - MSTB2 LTR MaLR 0 457 399 2081 103 3 39 chr1 12155848 12156025 -270037639 - AluSc SINE Alu -8 301 119 218 32 32 0 chr1 12156025 12156056 -270037608 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2294 57 0 4 chr1 12156056 12156337 -270037327 - AluY SINE Alu -31 280 1 2081 103 3 39 chr1 12156337 12156470 -270037194 - AluSc SINE Alu -188 121 1 2158 149 147 29 chr1 12156470 12156811 -270036853 - MSTB2 LTR MaLR -58 399 1 2234 101 0 13 chr1 12157076 12157392 -270036272 + AluSx SINE Alu 1 312 0 2380 63 7 0 chr1 12157571 12157870 -270035794 + AluY SINE Alu 1 301 -10 185 314 29 0 chr1 12158107 12158177 -270035487 + MIR SINE MIR 70 141 -67 2228 85 3 0 chr1 12158340 12158633 -270035031 - AluSp SINE Alu -19 294 1 223 187 0 40 chr1 12160946 12161021 -270032643 + GA-rich Low_complexity Low_complexity 5 76 0 23 0 0 0 chr1 12161433 12161456 -270032208 + AT_rich Low_complexity Low_complexity 1 23 0 2307 103 0 0 chr1 12161456 12161766 -270031898 - AluSx SINE Alu -2 310 1 1855 166 0 0 chr1 12161769 12162064 -270031600 - AluJo SINE Alu -17 295 1 198 0 0 0 chr1 12162069 12162091 -270031573 + (T)n Simple_repeat Simple_repeat 1 22 0 1140 158 0 0 chr1 12162094 12162271 -270031393 - FRAM SINE Alu 0 176 1 919 158 7 0 chr1 12163795 12163947 -270029717 - AluSx SINE Alu -16 296 144 574 57 0 0 chr1 12164099 12164169 -270029495 + Alu SINE Alu 2 71 -240 1013 88 15 0 chr1 12164169 12164306 -270029358 - AluSx SINE Alu -173 139 1 339 218 102 82 chr1 12164342 12164489 -270029175 + L2 LINE L2 3159 3308 -5 298 314 153 7 chr1 12164871 12165008 -270028656 - MIR SINE MIR -55 207 51 23 33 0 0 chr1 12165638 12165668 -270027996 + GC_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 12166015 12166042 -270027622 + GC_rich Low_complexity Low_complexity 1 27 0 209 300 17 0 chr1 12166185 12166305 -270027359 + (CCG)n Simple_repeat Simple_repeat 3 124 0 2349 65 0 26 chr1 12166699 12167009 -270026655 + AluSg SINE Alu 2 303 -7 189 203 14 29 chr1 12167058 12167127 -270026537 + GA-rich Low_complexity Low_complexity 2 69 0 2113 91 0 70 chr1 12167135 12167271 -270026393 + AluSx SINE Alu 1 145 -167 2484 64 0 0 chr1 12167271 12167582 -270026082 + AluY SINE Alu 1 311 0 2113 91 0 70 chr1 12167582 12167774 -270025890 + AluSx SINE Alu 145 306 -6 1925 142 23 0 chr1 12168257 12168559 -270025105 - AluSx SINE Alu 0 312 4 189 0 0 0 chr1 12168561 12168582 -270025082 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2030 107 11 0 chr1 12168582 12168862 -270024802 - AluSq SINE Alu -30 283 1 198 0 0 0 chr1 12168863 12168885 -270024779 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1631 167 0 42 chr1 12168885 12169173 -270024491 - AluJb SINE Alu -30 282 7 582 92 0 0 chr1 12169186 12169273 -270024391 - L1PA16 LINE L1 -1 6165 6079 2314 75 3 3 chr1 12169274 12169569 -270024095 - AluSp SINE Alu -18 295 1 435 97 0 0 chr1 12169576 12169638 -270024026 + Alu SINE Alu 243 304 -8 23 54 0 0 chr1 12169642 12169679 -270023985 + AT_rich Low_complexity Low_complexity 1 37 0 1647 161 19 63 chr1 12170166 12170483 -270023181 - AluJb SINE Alu -9 303 1 344 304 40 61 chr1 12170564 12170712 -270022952 + MIR SINE MIR 48 192 -70 1725 152 10 30 chr1 12170737 12171039 -270022625 + AluJb SINE Alu 1 296 -16 253 336 18 18 chr1 12171210 12171323 -270022341 + MIR SINE MIR 33 145 -63 766 163 0 44 chr1 12171392 12171527 -270022137 - AluJo SINE Alu -178 134 6 1997 125 3 0 chr1 12171586 12171875 -270021789 - AluSp SINE Alu -23 290 1 27 62 0 0 chr1 12171900 12171948 -270021716 + AT_rich Low_complexity Low_complexity 1 48 0 248 239 0 43 chr1 12171996 12172088 -270021576 - HAL1b LINE L1 -82 1266 1179 2220 101 0 0 chr1 12172093 12172390 -270021274 + AluSg1 SINE Alu 1 297 -12 1970 154 0 0 chr1 12172497 12172809 -270020855 - AluJb SINE Alu 0 312 1 2322 88 3 0 chr1 12173015 12173320 -270020344 - AluSg SINE Alu -4 306 1 2185 92 7 0 chr1 12173505 12173800 -270019864 + AluSp SINE Alu 5 301 -12 1098 153 0 0 chr1 12173800 12173977 -270019687 + AluJb SINE Alu 134 310 -2 275 305 48 0 chr1 12174213 12174318 -270019346 - MIR SINE MIR -36 226 117 273 283 151 0 chr1 12174850 12175002 -270018662 + MIR3 SINE MIR 13 187 -21 488 239 147 73 chr1 12175028 12175246 -270018418 - MIR SINE MIR 0 262 29 1647 128 3 66 chr1 12175401 12175428 -270018236 - AluSx SINE Alu 0 312 285 202 39 0 0 chr1 12175428 12175454 -270018210 + (TTTA)n Simple_repeat Simple_repeat 2 84 0 1647 128 3 66 chr1 12175454 12175542 -270018122 - AluSx SINE Alu -27 285 193 2249 101 0 0 chr1 12175542 12175839 -270017825 - AluSg SINE Alu -13 297 1 1473 136 0 0 chr1 12175839 12176045 -270017619 - AluSx SINE Alu -106 206 1 1647 128 3 66 chr1 12175839 12176011 -270017653 - AluSx SINE Alu -119 193 35 666 159 8 32 chr1 12176011 12176053 -270017611 - AluSg/x SINE Alu -3 306 185 366 232 125 9 chr1 12176055 12176167 -270017497 - MIR SINE MIR -68 140 16 2003 128 0 0 chr1 12176425 12176739 -270016925 - AluSx SINE Alu 0 314 1 2318 109 0 0 chr1 12176751 12177064 -270016600 - AluSq SINE Alu 0 313 1 224 420 35 0 chr1 12177144 12177287 -270016377 + MIR SINE MIR 101 248 -14 2259 110 7 0 chr1 12177859 12178167 -270015497 - AluSx SINE Alu -2 310 1 243 359 16 31 chr1 12178172 12178300 -270015364 - MIR SINE MIR -91 171 46 2155 109 17 0 chr1 12179524 12179818 -270013846 - AluSq SINE Alu -8 305 7 805 169 15 7 chr1 12179844 12179980 -270013684 - AluJo SINE Alu -175 137 1 1463 178 0 0 chr1 12179993 12180235 -270013429 - AluJo SINE Alu -66 246 5 694 180 7 43 chr1 12180364 12180503 -270013161 - MIR SINE MIR -37 225 92 531 255 12 69 chr1 12180900 12181101 -270012563 + MIR SINE MIR 36 228 -34 431 137 0 0 chr1 12181149 12181222 -270012442 - Alu SINE Alu -2 309 237 1732 102 3 129 chr1 12181256 12181384 -270012280 - AluSx SINE Alu -20 292 150 243 0 0 0 chr1 12181384 12181411 -270012253 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2070 108 3 14 chr1 12181411 12181698 -270011966 - AluSq SINE Alu -27 286 3 1732 102 3 129 chr1 12181698 12181902 -270011762 - AluSx SINE Alu -160 152 1 2043 121 3 33 chr1 12181902 12182209 -270011455 - AluSq SINE Alu -15 298 1 344 224 199 25 chr1 12182650 12182811 -270010853 + MER5A DNA MER1_type 1 189 0 2126 120 0 13 chr1 12182896 12183204 -270010460 - AluSg1 SINE Alu -5 304 1 * 2230 119 0 0 chr1 12183203 12183513 -270010151 - AluSq SINE Alu -3 310 1 403 274 256 42 chr1 12183699 12183867 -270009797 + MIR SINE MIR 2 227 -35 2129 105 3 3 chr1 12183867 12184161 -270009503 + AluSx SINE Alu 1 294 -18 403 274 256 42 chr1 12184161 12184207 -270009457 + MIR SINE MIR 227 262 0 303 49 0 0 chr1 12184339 12184380 -270009284 + (CA)n Simple_repeat Simple_repeat 2 42 0 1612 162 22 50 chr1 12185054 12185375 -270008289 + AluJb SINE Alu 1 312 0 2277 115 0 0 chr1 12185613 12185925 -270007739 - AluSx SINE Alu 0 312 1 888 270 14 0 chr1 12185938 12186153 -270007511 - MIR SINE MIR -25 237 20 315 318 37 32 chr1 12186330 12186519 -270007145 + MER117 DNA MER1_type 8 197 0 2199 127 76 95 chr1 12186676 12186904 -270006760 - MSTB LTR MaLR 0 426 195 1718 129 111 7 chr1 12186904 12187183 -270006481 + AluSg1 SINE Alu 2 309 0 2199 127 76 95 chr1 12187183 12187208 -270006456 - MSTB LTR MaLR -231 195 171 2014 131 14 0 chr1 12187208 12187499 -270006165 + AluSx SINE Alu 1 295 -17 2199 127 76 95 chr1 12187499 12187677 -270005987 - MSTB LTR MaLR -255 171 2 224 281 31 0 chr1 12187681 12187745 -270005919 + MIR3 SINE MIR 8 73 -135 2067 113 23 7 chr1 12188375 12188675 -270004989 + AluSx SINE Alu 7 311 -1 343 296 20 10 chr1 12188769 12188867 -270004797 - L2 LINE L2 -24 3248 3150 502 287 108 74 chr1 12188867 12189247 -270004417 - MLT1K LTR MaLR -51 537 145 2072 138 0 0 chr1 12189332 12189636 -270004028 - AluSx SINE Alu -8 304 1 601 302 101 39 chr1 12190506 12190716 -270002948 + L2 LINE L2 2294 2490 -824 1977 139 0 10 chr1 12190716 12191010 -270002654 - AluSx SINE Alu -21 291 1 601 302 101 39 chr1 12191010 12191186 -270002478 + L2 LINE L2 2490 2704 -610 1895 104 0 0 chr1 12191200 12191451 -270002213 + AluSx SINE Alu 1 251 -61 46 19 0 0 chr1 12191451 12191504 -270002160 + AT_rich Low_complexity Low_complexity 1 53 0 213 19 111 0 chr1 12191509 12191563 -270002101 + (TA)n Simple_repeat Simple_repeat 2 61 0 2393 65 0 0 chr1 12191564 12191858 -270001806 + AluY SINE Alu 11 304 -7 205 253 23 58 chr1 12192110 12192197 -270001467 + MIR SINE MIR 62 145 -63 886 210 52 4 chr1 12192748 12192977 -270000687 - MLT1A1 LTR MaLR 0 365 126 2056 129 0 0 chr1 12192977 12193272 -270000392 - AluSx SINE Alu -17 295 1 751 225 55 60 chr1 12193289 12193427 -270000237 + MIR SINE MIR 2 139 -123 2220 99 3 0 chr1 12193427 12193719 -269999945 + AluSq SINE Alu 1 293 -20 751 225 55 60 chr1 12193719 12193786 -269999878 + MIR SINE MIR 139 208 -54 1867 159 7 3 chr1 12193786 12194082 -269999582 - AluJb SINE Alu -15 297 1 751 225 55 60 chr1 12194082 12194093 -269999571 + MIR SINE MIR 208 218 -44 1898 123 0 52 chr1 12194104 12194414 -269999250 + AluSq SINE Alu 1 294 -19 299 274 29 39 chr1 12195277 12195407 -269998257 + MIR3 SINE MIR 63 192 -48 2358 94 0 7 chr1 12195533 12195842 -269997822 - AluSx SINE Alu -5 307 1 861 120 0 23 chr1 12195845 12195978 -269997686 - AluJo/FLAM SINE Alu -182 130 1 2088 106 0 10 chr1 12196040 12196333 -269997331 + AluSx SINE Alu 23 312 0 626 260 103 0 chr1 12196589 12196793 -269996871 - MIR SINE MIR -17 245 21 351 271 10 31 chr1 12197452 12197548 -269996116 + MER5A DNA MER1_type 57 150 -39 838 247 22 54 chr1 12198718 12198839 -269994825 + MIR SINE MIR 30 142 -120 2297 96 0 0 chr1 12198839 12199162 -269994502 + AluSq SINE Alu 1 313 0 838 247 22 54 chr1 12199162 12199263 -269994401 + MIR SINE MIR 142 245 -17 1305 109 0 0 chr1 12199352 12199526 -269994138 - AluSg/x SINE Alu -5 307 134 2226 101 3 0 chr1 12199526 12199832 -269993832 - AluY SINE Alu -4 307 1 836 122 0 0 chr1 12199838 12199961 -269993703 - AluSg/x SINE Alu -4 305 183 1623 93 0 13 chr1 12199961 12200186 -269993478 - AluSg1 SINE Alu -87 222 1 215 309 62 12 chr1 12200214 12200295 -269993369 + MER5B DNA MER1_type 29 113 -65 201 236 14 42 chr1 12200365 12200437 -269993227 - L2 LINE L2 -286 2986 2917 250 197 42 28 chr1 12200780 12200851 -269992813 + MIR SINE MIR 80 151 -111 22 0 0 0 chr1 12200996 12201018 -269992646 + AT_rich Low_complexity Low_complexity 1 22 0 1757 177 3 3 chr1 12201018 12201328 -269992336 + AluJo SINE Alu 1 310 -2 284 228 62 53 chr1 12201368 12201524 -269992140 - MER58B DNA MER1_type -2079 341 188 1850 138 0 66 chr1 12201524 12201701 -269991963 - AluJo SINE Alu -11 301 114 198 0 0 0 chr1 12201701 12201723 -269991941 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1971 121 0 0 chr1 12201723 12202003 -269991661 - AluSx SINE Alu -30 282 3 1850 138 0 66 chr1 12202003 12202144 -269991520 - AluJo SINE Alu -196 116 3 284 228 62 53 chr1 12202144 12202181 -269991483 - MER58B DNA MER1_type -2232 188 153 2459 77 0 0 chr1 12202181 12202492 -269991172 - AluY SINE Alu 0 311 1 694 198 116 17 chr1 12202518 12202675 -269990989 + AluJb SINE Alu 123 300 -12 2366 96 0 0 chr1 12202675 12202987 -269990677 + AluSx SINE Alu 1 312 0 694 198 116 17 chr1 12202987 12203001 -269990663 + AluJb SINE Alu 300 311 -1 313 216 27 14 chr1 12203005 12203079 -269990585 - MER58B DNA MER1_type -266 75 1 304 217 14 0 chr1 12203104 12203173 -269990491 - L1ME LINE L1 -515 5606 5537 950 144 0 6 chr1 12203625 12203806 -269989858 + (TCC)n Simple_repeat Simple_repeat 1 180 0 199 327 0 0 chr1 12204326 12204381 -269989283 + L3b LINE CR1 1334 1388 -195 200 351 13 0 chr1 12205176 12205253 -269988411 - L2 LINE L2 -1 3312 3235 301 341 63 8 chr1 12205708 12205887 -269987777 + MIR SINE MIR 22 205 -57 243 321 28 0 chr1 12205928 12206037 -269987627 + (CA)n Simple_repeat Simple_repeat 1 112 0 180 116 18 107 chr1 12206339 12206451 -269987213 + G-rich Low_complexity Low_complexity 1 102 0 197 135 19 0 chr1 12207514 12207566 -269986098 + (TA)n Simple_repeat Simple_repeat 2 54 0 261 138 0 108 chr1 12207566 12207631 -269986033 - FLAM_A SINE Alu -2 131 76 1196 138 0 0 chr1 12207640 12207656 -269986008 - AluSg/x SINE Alu -11 299 284 234 0 0 0 chr1 12207656 12207682 -269985982 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1196 138 0 0 chr1 12207682 12207846 -269985818 - AluSg/x SINE Alu -25 285 119 2059 138 0 0 chr1 12207872 12208170 -269985494 - AluSx SINE Alu -14 298 1 31 0 0 0 chr1 12208179 12208210 -269985454 + AT_rich Low_complexity Low_complexity 1 31 0 2234 84 7 10 chr1 12208423 12208731 -269984933 - AluSx SINE Alu -4 308 2 826 180 0 90 chr1 12208756 12208934 -269984730 - FRAM SINE Alu 0 166 5 1807 90 143 4 chr1 12208939 12209205 -269984459 - AluSq SINE Alu 0 303 1 821 195 125 21 chr1 12209481 12209741 -269983923 - MLT1E1 LTR MaLR -6 648 416 1807 161 0 27 chr1 12209741 12209876 -269983788 + AluJb SINE Alu 1 138 -174 2208 94 3 31 chr1 12209876 12210195 -269983469 + AluSx SINE Alu 1 310 -2 1807 161 0 27 chr1 12210195 12210358 -269983306 + AluJb SINE Alu 138 291 -21 821 195 125 21 chr1 12210358 12210562 -269983102 - MLT1E1 LTR MaLR -238 416 6 352 261 11 44 chr1 12210807 12210987 -269982677 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 * 380 254 9 56 chr1 12210906 12211220 -269982444 + G-rich Low_complexity Low_complexity 1 299 0 1436 97 0 0 chr1 12211398 12211584 -269982080 - AluSq SINE Alu -127 186 1 431 166 16 53 chr1 12212090 12212165 -269981499 + CT-rich Low_complexity Low_complexity 1 77 -103 2037 122 33 3 chr1 12212165 12212468 -269981196 - AluSq SINE Alu -1 312 1 431 166 16 53 chr1 12212468 12212579 -269981085 + CT-rich Low_complexity Low_complexity 77 180 0 185 286 32 16 chr1 12212593 12212656 -269981008 - L2 LINE L2 -10 3303 3240 2054 144 0 0 chr1 12213134 12213433 -269980231 + AluSx SINE Alu 1 299 -13 1419 124 14 23 chr1 12213497 12213714 -269979950 - AluJb SINE Alu -13 299 85 559 207 186 0 chr1 12213764 12213909 -269979755 + MER20 DNA MER1_type 1 172 -47 370 262 220 6 chr1 12213939 12214107 -269979557 - MIR SINE MIR -46 216 13 1985 100 50 0 chr1 12214118 12214399 -269979265 - AluSx SINE Alu -17 295 1 2120 130 0 0 chr1 12215535 12215842 -269977822 - AluSx SINE Alu -5 307 1 1099 118 39 28 chr1 12215891 12216069 -269977595 - AluSq SINE Alu -133 180 1 2089 114 13 7 chr1 12216096 12216395 -269977269 + AluSx SINE Alu 1 301 -11 2266 96 0 0 chr1 12216589 12216890 -269976774 - AluSx SINE Alu -10 302 2 1905 146 7 7 chr1 12216976 12217278 -269976386 + AluSx SINE Alu 1 302 -10 1916 166 0 3 chr1 12217286 12217599 -269976065 + AluSx SINE Alu 1 312 0 184 412 47 26 chr1 12217824 12218009 -269975655 - L2 LINE L2 -659 2655 2463 2162 94 26 19 chr1 12218009 12218316 -269975348 + AluSx SINE Alu 1 309 -3 184 412 47 26 chr1 12218316 12218363 -269975301 - L2 LINE L2 -851 2463 2418 641 147 80 0 chr1 12218726 12218876 -269974788 - MER33 DNA MER1_type -22 341 180 1204 142 44 76 chr1 12218899 12219174 -269974490 + AluJo SINE Alu 22 287 -25 1761 94 112 0 chr1 12219178 12219445 -269974219 - AluSg SINE Alu -13 297 1 255 225 99 0 chr1 12219500 12219571 -269974093 - MER33 DNA MER1_type -237 87 10 278 287 172 0 chr1 12220798 12220920 -269972744 + L2 LINE L2 3126 3268 -4 1828 73 28 0 chr1 12221139 12221386 -269972278 + AluSx SINE Alu 1 254 -58 239 279 32 82 chr1 12222838 12222955 -269970709 + MER103 DNA DNA 16 126 -40 2019 88 3 54 chr1 12222955 12223287 -269970377 - AluY SINE Alu 0 317 1 239 279 32 82 chr1 12223287 12223326 -269970338 + MER103 DNA DNA 126 165 -1 412 289 44 0 chr1 12223695 12223830 -269969834 - L2 LINE L2 -212 3060 2920 2842 157 74 43 chr1 12224412 12225196 -269968468 + MER21A LTR ERV1 3 921 -10 264 368 18 9 chr1 12225221 12225335 -269968329 - MIR SINE MIR -122 140 26 2200 115 0 6 chr1 12225372 12225684 -269967980 - AluSx SINE Alu -2 310 1 2047 115 40 0 chr1 12226497 12226793 -269966871 - AluSg SINE Alu -2 308 1 1961 124 9 22 chr1 12226944 12227259 -269966405 + AluSx SINE Alu 1 311 -1 2175 113 0 0 chr1 12227264 12227564 -269966100 + AluSx SINE Alu 1 300 -12 1655 166 6 52 chr1 12227568 12227893 -269965771 + AluJo SINE Alu 1 310 -2 225 0 0 0 chr1 12228001 12228026 -269965638 + (TG)n Simple_repeat Simple_repeat 2 26 0 2023 111 3 10 chr1 12228026 12228319 -269965345 - AluSg SINE Alu -19 291 1 791 158 23 23 chr1 12228322 12228455 -269965209 - AluJo/FLAM SINE Alu -169 133 1 848 175 28 0 chr1 12228469 12228612 -269965052 - FRAM SINE Alu -15 151 5 2042 137 0 3 chr1 12228619 12228918 -269964746 - AluSx SINE Alu -14 298 1 227 302 207 24 chr1 12229459 12229628 -269964036 - MIR SINE MIR -42 220 21 196 270 79 11 chr1 12230318 12230407 -269963257 - L2 LINE L2 -20 3252 3158 207 291 51 13 chr1 12231294 12231373 -269962291 - L2 LINE L2 -246 3067 2986 2774 10 0 0 chr1 12231559 12231869 -269961795 + AluYa5 SINE Alu 1 310 -1 372 247 7 19 chr1 12231881 12232050 -269961614 + MIR SINE MIR 13 257 -5 709 313 52 4 chr1 12232076 12232309 -269961355 - MIR SINE MIR -10 252 9 795 162 156 6 chr1 12232729 12232896 -269960768 - AluJb SINE Alu -1 311 120 1409 143 64 19 chr1 12232897 12233162 -269960502 - L1MB2 LINE L1 -1 6170 5894 588 188 7 112 chr1 12233175 12233371 -269960293 - MER31-int LTR ERV1 -3250 1686 1391 2294 68 7 13 chr1 12233371 12233678 -269959986 + AluY SINE Alu 2 306 -5 588 188 7 112 chr1 12233678 12233777 -269959887 - MER31-int LTR ERV1 -3545 1391 1283 2326 80 0 16 chr1 12234223 12234535 -269959129 + AluY SINE Alu 1 307 -4 1512 148 9 85 chr1 12234882 12235218 -269958446 + AluJo SINE Alu 5 312 0 2275 111 0 0 chr1 12235267 12235573 -269958091 + AluSx SINE Alu 1 306 -6 2302 95 0 3 chr1 12236672 12236977 -269956687 + AluSx SINE Alu 1 304 -8 2346 86 0 0 chr1 12237794 12238098 -269955566 - AluSg SINE Alu -6 304 1 2055 91 0 7 chr1 12238183 12238458 -269955206 + AluSg SINE Alu 2 274 -36 234 0 0 0 chr1 12238466 12238492 -269955172 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1040 106 0 0 chr1 12239433 12239574 -269954090 - AluJb SINE Alu -171 141 1 375 219 37 0 chr1 12239642 12239724 -269953940 + FLAM_A SINE Alu 43 127 -6 2280 81 0 10 chr1 12239729 12240037 -269953627 + AluY SINE Alu 1 305 -6 203 331 105 22 chr1 12240051 12240111 -269953553 + MIR SINE MIR 1 55 -207 2285 79 10 0 chr1 12240111 12240403 -269953261 - AluSq SINE Alu -15 298 4 203 331 105 22 chr1 12240403 12240523 -269953141 + MIR SINE MIR 55 196 -66 189 297 141 0 chr1 12240577 12240641 -269953023 - MIR3 SINE MIR -6 202 130 2019 88 4 7 chr1 12240956 12241229 -269952435 - AluSx SINE Alu -40 272 1 1756 170 20 0 chr1 12242328 12242622 -269951042 + AluJo SINE Alu 1 300 -12 471 316 115 43 chr1 12242818 12243301 -269950363 - L1ME2 LINE L1 -217 5947 5413 2304 88 3 0 chr1 12243301 12243597 -269950067 + AluSp SINE Alu 3 299 -14 471 316 115 43 chr1 12243597 12243696 -269949968 - L1ME2 LINE L1 -751 5413 5323 1882 147 3 7 chr1 12245000 12245299 -269948365 - AluSx SINE Alu -14 298 1 9868 44 21 88 chr1 12247683 12249164 -269944500 - SVA Other Other -1 1385 5 249 333 48 32 chr1 12249166 12249292 -269944372 - MIR SINE MIR -115 147 20 2233 107 0 0 chr1 12249788 12250087 -269943577 + AluSq SINE Alu 1 299 -14 216 265 0 0 chr1 12250463 12250512 -269943152 - MIR SINE MIR -117 91 43 299 232 160 16 chr1 12250549 12250674 -269942990 + MIR3 SINE MIR 20 162 -46 499 240 114 17 chr1 12251155 12251357 -269942307 + MIR SINE MIR 13 234 -28 2117 102 3 0 chr1 12253716 12254010 -269939654 - AluSg1 SINE Alu -6 303 9 300 305 199 4 chr1 12254120 12254382 -269939282 + L2 LINE L2 2379 2691 -623 417 242 40 10 chr1 12254991 12255090 -269938574 - L2 LINE L2 -1 3312 3211 1946 105 22 0 chr1 12255094 12255390 -269938274 + AluSg SINE Alu 1 302 0 1327 219 167 38 chr1 12255428 12255551 -269938113 + LTR51 LTR ERV1 130 236 -435 1733 146 38 11 chr1 12255551 12255838 -269937826 - AluJb SINE Alu -15 297 3 1327 219 167 38 chr1 12255838 12255894 -269937770 + LTR51 LTR ERV1 236 283 -388 1993 153 0 0 chr1 12255894 12256194 -269937470 + AluJb SINE Alu 1 300 -12 698 209 0 0 chr1 12256195 12256310 -269937354 - AluJo/FLAM SINE Alu -187 115 1 1327 219 167 38 chr1 12256310 12256607 -269937057 + LTR51 LTR ERV1 282 671 0 697 253 70 0 chr1 12256629 12256815 -269936849 - L1M4 LINE L1 -464 5720 5522 2182 93 7 7 chr1 12256829 12257131 -269936533 - AluSx SINE Alu -10 302 1 2432 70 3 6 chr1 12257312 12257626 -269936038 - AluSp SINE Alu 0 313 1 1118 59 0 0 chr1 12257626 12257761 -269935903 - AluSq/x SINE Alu -177 135 1 372 219 99 53 chr1 12257765 12257916 -269935748 - L1M4 LINE L1 -1100 5046 4889 522 128 12 0 chr1 12257983 12258069 -269935595 - AluS SINE Alu -224 89 3 429 238 131 0 chr1 12258072 12258194 -269935470 - L1M4 LINE L1 -1241 4905 4768 994 151 112 15 chr1 12258194 12258400 -269935264 - AluJb SINE Alu -2 310 85 1293 64 0 74 chr1 12258403 12258605 -269935059 - AluSg/x SINE Alu -7 303 117 2173 60 0 98 chr1 12258725 12259061 -269934603 + AluSg SINE Alu 1 303 -7 479 215 84 0 chr1 12260063 12260170 -269933494 + MIR SINE MIR 25 140 -122 229 65 0 0 chr1 12260275 12260306 -269933358 + Alu SINE Alu 205 235 -67 196 214 0 89 chr1 12260342 12260398 -269933266 - MIR SINE MIR -2 260 210 1096 183 85 64 chr1 12260421 12260594 -269933070 - AluJb SINE Alu 0 302 119 2092 104 0 7 chr1 12260594 12260891 -269932773 - AluSx SINE Alu -6 306 12 1096 183 85 64 chr1 12260891 12261012 -269932652 - AluJb SINE Alu -183 119 2 2532 58 0 0 chr1 12261029 12261340 -269932324 + AluY SINE Alu 1 311 0 566 225 63 23 chr1 12261367 12261557 -269932107 - MIR SINE MIR -54 208 16 265 261 23 23 chr1 12261818 12261906 -269931758 - MIR3 SINE MIR -35 173 86 2033 133 0 0 chr1 12262974 12263276 -269930388 - AluSx SINE Alu -6 306 5 1625 78 136 39 chr1 12263289 12263594 -269930070 - AluY SINE Alu 0 330 1 2267 99 0 0 chr1 12263630 12263934 -269929730 + AluSg SINE Alu 1 304 -6 603 131 0 20 chr1 12263942 12264041 -269929623 - HY1 scRNA scRNA -15 97 1 2270 159 19 82 chr1 12264301 12264339 -269929325 - L1MB3 LINE L1 -9 6174 6135 2195 83 10 0 chr1 12264339 12264627 -269929037 - AluSq SINE Alu -22 291 1 2270 159 19 82 chr1 12264627 12264964 -269928700 - L1MB3 LINE L1 -48 6135 5841 2054 131 0 0 chr1 12264964 12265276 -269928388 - AluSx SINE Alu 0 312 1 2270 159 19 82 chr1 12265276 12265439 -269928225 - L1MB3 LINE L1 -342 5841 5669 512 279 45 22 chr1 12265439 12265618 -269928046 + L2 LINE L2 2682 2864 -450 1651 122 49 0 chr1 12265628 12265891 -269927773 - AluSq SINE Alu -14 299 24 2025 136 0 0 chr1 12265939 12266233 -269927431 + AluSx SINE Alu 1 294 -18 190 217 43 0 chr1 12266304 12266350 -269927314 + L2 LINE L2 1370 1417 -1897 344 302 41 58 chr1 12266593 12266765 -269926899 - MIR SINE MIR -32 230 62 1266 296 124 23 chr1 12266769 12266912 -269926752 + L2 LINE L2 1678 1805 -1509 2077 127 0 13 chr1 12266912 12267226 -269926438 - AluSx SINE Alu -2 310 1 1266 296 124 23 chr1 12267226 12267786 -269925878 + L2 LINE L2 1805 2452 -862 239 250 0 0 chr1 12267787 12267843 -269925821 - Tigger5 DNA MER2_type -9 2314 2259 2066 112 10 0 chr1 12267846 12268141 -269925523 + AluSg SINE Alu 1 298 -12 632 290 151 30 chr1 12268309 12268740 -269924924 + L2 LINE L2 2828 3310 -3 294 259 235 18 chr1 12270286 12270452 -269923212 - MIR SINE MIR -14 248 47 608 120 0 0 chr1 12270473 12270565 -269923099 - AluSp/q SINE Alu -7 306 215 1040 101 0 0 chr1 12270566 12270705 -269922959 + AluSg/x SINE Alu 156 294 -16 221 242 91 91 chr1 12270818 12270950 -269922714 + MIR SINE MIR 120 251 -11 1472 146 97 41 chr1 12272658 12272738 -269920926 - L1M3 LINE L1 -495 5688 5614 1742 157 3 20 chr1 12272738 12273038 -269920626 - AluJb SINE Alu -17 295 1 1472 146 97 41 chr1 12273038 12273299 -269920365 - L1M3 LINE L1 -569 5614 5328 562 179 189 0 chr1 12273334 12273440 -269920224 - FLAM_C SINE Alu -16 127 2 269 104 149 15 chr1 12273443 12273510 -269920154 - L1M3 LINE L1 -812 5368 5293 2095 105 10 0 chr1 12273626 12273920 -269919744 + AluSx SINE Alu 1 297 -15 1931 142 0 3 chr1 12273933 12274229 -269919435 + AluSx SINE Alu 1 295 -17 1897 137 31 0 chr1 12274698 12274991 -269918673 - AluSx SINE Alu -10 302 1 190 350 86 43 chr1 12275271 12275528 -269918136 + L2 LINE L2 2973 3240 -73 329 62 0 37 chr1 12275970 12276039 -269917625 + FLAM_A SINE Alu 71 133 0 2325 70 0 7 chr1 12276041 12276340 -269917324 + AluY SINE Alu 1 297 -14 2068 149 0 0 chr1 12276340 12276648 -269917016 + AluSx SINE Alu 1 308 -4 1536 173 87 0 chr1 12276650 12276927 -269916737 - 7SLRNA srpRNA srpRNA -15 305 5 2371 82 0 3 chr1 12276972 12277277 -269916387 + AluSc SINE Alu 1 304 -5 575 259 9 94 chr1 12277357 12277581 -269916083 - L2 LINE L2 0 3313 3109 717 347 126 10 chr1 12277591 12277989 -269915675 + L2 LINE L2 2827 3270 -2 326 277 0 43 chr1 12278648 12278742 -269914922 + MIR SINE MIR 60 149 -113 2726 144 56 34 chr1 12279680 12279721 -269913943 - LTR64 LTR ERVK 0 513 474 1626 179 0 29 chr1 12279721 12280034 -269913630 + AluJb SINE Alu 1 304 -8 2285 87 3 0 chr1 12280035 12280334 -269913330 + AluSp SINE Alu 2 301 -12 2726 144 56 34 chr1 12280334 12280791 -269912873 - LTR64 LTR ERVK -38 475 2 394 241 11 0 chr1 12280867 12280954 -269912710 + MIR SINE MIR 75 162 -100 1858 129 3 14 chr1 12280956 12281288 -269912376 + AluJo SINE Alu 1 329 0 292 198 135 21 chr1 12282018 12282114 -269911550 + MLT1C LTR MaLR 1 107 -360 204 40 0 0 chr1 12282114 12282139 -269911525 + (T)n Simple_repeat Simple_repeat 1 25 0 287 177 16 0 chr1 12282162 12282218 -269911446 - MLT1B LTR MaLR -11 379 322 2061 118 30 7 chr1 12282218 12282523 -269911141 - AluSq SINE Alu -1 312 1 414 0 0 0 chr1 12282572 12282618 -269911046 + (TCTCCC)n Simple_repeat Simple_repeat 1 46 0 5977 47 17 4 chr1 12282618 12283684 -269909980 + SVA Other Other 57 962 -424 802 269 54 31 chr1 12283718 12283826 -269909838 + MLT1C LTR MaLR 110 214 -253 2175 82 16 30 chr1 12283826 12284130 -269909534 + AluSx SINE Alu 1 300 -12 802 269 54 31 chr1 12284130 12284371 -269909293 + MLT1C LTR MaLR 214 467 0 2150 124 3 0 chr1 12284371 12284670 -269908994 + AluSx SINE Alu 1 300 -12 1968 201 34 18 chr1 12284814 12285197 -269908467 + MLT1B LTR MaLR 1 389 -1 2163 127 0 0 chr1 12285607 12285915 -269907749 - AluSx SINE Alu -4 308 1 2069 130 0 0 chr1 12285960 12286267 -269907397 - AluY SINE Alu -4 307 1 889 238 24 10 chr1 12286270 12286476 -269907188 - MIR SINE MIR -36 226 18 454 309 0 6 chr1 12286756 12286937 -269906727 + (CA)n Simple_repeat Simple_repeat 1 180 0 220 298 11 11 chr1 12286968 12287062 -269906602 + (CA)n Simple_repeat Simple_repeat 1 94 0 432 130 0 0 chr1 12287154 12287223 -269906441 + (CA)n Simple_repeat Simple_repeat 1 69 0 1876 155 0 19 chr1 12288019 12288336 -269905328 + AluJb SINE Alu 2 312 0 207 176 0 0 chr1 12288339 12288373 -269905291 + GA-rich Low_complexity Low_complexity 2 35 0 953 266 26 29 chr1 12288680 12288738 -269904926 + MLT1B LTR MaLR 22 79 -311 2278 107 0 0 chr1 12288738 12289048 -269904616 - AluSg SINE Alu 0 310 1 953 266 26 29 chr1 12289048 12289301 -269904363 + MLT1B LTR MaLR 79 332 -58 503 88 0 0 chr1 12289301 12289369 -269904295 + AluS SINE Alu 1 68 -245 1286 147 0 0 chr1 12289472 12289663 -269904001 + AluSp SINE Alu 119 309 -4 263 231 0 15 chr1 12289663 12289728 -269903936 + MLT1B LTR MaLR 327 390 0 329 276 71 0 chr1 12289792 12289890 -269903774 + LTR40a LTR ERVL 96 200 -319 1743 145 10 20 chr1 12290125 12290422 -269903242 - AluJo SINE Alu -18 294 1 2009 131 0 7 chr1 12290514 12290811 -269902853 - AluSx SINE Alu -17 295 1 2093 69 62 21 chr1 12290841 12291129 -269902535 - AluSq SINE Alu -13 300 1 261 220 230 20 chr1 12291135 12291235 -269902429 - L2 LINE L2 0 3313 3193 434 313 67 25 chr1 12291441 12291641 -269902023 - MIR SINE MIR -43 219 12 967 164 0 0 chr1 12291677 12291829 -269901835 - FRAM SINE Alu -11 165 14 686 255 117 35 chr1 12292502 12292879 -269900785 + L2 LINE L2 2370 2777 -537 237 247 39 13 chr1 12292879 12292956 -269900708 + L2 LINE L2 3231 3309 -4 1052 169 0 11 chr1 12293212 12293390 -269900274 - FRAM SINE Alu 0 176 1 411 183 0 0 chr1 12293825 12293907 -269899757 + (TG)n Simple_repeat Simple_repeat 1 82 0 420 244 326 4 chr1 12294937 12295179 -269898485 - L2 LINE L2 0 3313 2994 381 283 65 0 chr1 12295204 12295342 -269898322 - L1MA10 LINE L1 -8 6326 6180 308 283 17 8 chr1 12295358 12295478 -269898186 - L2 LINE L2 -328 2985 2865 191 247 212 0 chr1 12296131 12296216 -269897448 + MIR SINE MIR 30 132 -130 1701 184 10 0 chr1 12296219 12296512 -269897152 - AluJo SINE Alu -16 296 1 212 295 26 0 chr1 12296802 12296880 -269896784 + MIR3 SINE MIR 81 160 -48 704 241 42 0 chr1 12297067 12297233 -269896431 - MIR SINE MIR -65 197 25 318 241 177 35 chr1 12297327 12297468 -269896196 - MIR3 SINE MIR -31 177 17 199 333 16 62 chr1 12297814 12297943 -269895721 - MIR SINE MIR -20 242 120 1206 199 51 1 chr1 12297944 12298403 -269895261 + MLT1F LTR MaLR 24 567 0 195 158 26 0 chr1 12298405 12298443 -269895221 - MIR SINE MIR -92 116 78 618 282 138 0 chr1 12298525 12298720 -269894944 + MIR SINE MIR 29 250 -12 2217 113 3 3 chr1 12299097 12299407 -269894257 + AluSx SINE Alu 1 310 -2 348 261 100 39 chr1 12300471 12300601 -269893063 + MIR SINE MIR 125 262 0 980 289 52 95 chr1 12300776 12301315 -269892349 - L1ME LINE L1 -298 5823 5308 739 167 26 0 chr1 12301357 12301471 -269892193 - FLAM_C SINE Alu -15 118 2 182 289 72 24 chr1 12301495 12301578 -269892086 + MIR SINE MIR 21 107 -101 533 204 8 0 chr1 12302263 12302395 -269891269 + (TCCA)n Simple_repeat Simple_repeat 4 136 0 1416 65 0 2 chr1 12302418 12302777 -269890887 + (TCCA)n Simple_repeat Simple_repeat 1 539 0 1374 61 0 0 chr1 12302802 12303056 -269890608 + (TCCA)n Simple_repeat Simple_repeat 1 254 0 473 115 115 0 chr1 12305144 12305222 -269888442 - FRAM SINE Alu -16 160 74 2249 102 3 0 chr1 12305234 12305538 -269888126 - AluSq SINE Alu -8 305 1 24 32 0 0 chr1 12305548 12305579 -269888085 + AT_rich Low_complexity Low_complexity 1 31 0 604 334 37 40 chr1 12305656 12306317 -269887347 - L1ME4a LINE L1 -86 6035 5383 2102 114 3 0 chr1 12306510 12306808 -269886856 - AluSx SINE Alu -13 299 1 2146 103 7 0 chr1 12306812 12307104 -269886560 - AluSx SINE Alu -14 298 5 1851 120 53 7 chr1 12307562 12307845 -269885819 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr1 12308047 12308068 -269885596 + GC_rich Low_complexity Low_complexity 1 21 0 216 253 23 81 chr1 12308491 12308578 -269885086 - MIR SINE MIR -62 146 65 463 317 174 17 chr1 12308899 12309018 -269884646 - L3 LINE CR1 -104 1473 1374 2388 84 0 3 chr1 12309018 12309326 -269884338 - AluSg SINE Alu -3 307 1 2258 97 7 3 chr1 12309326 12309635 -269884029 - AluSq SINE Alu -3 310 1 463 317 174 17 chr1 12309635 12309807 -269883857 - L3 LINE CR1 -202 1375 1135 596 271 229 32 chr1 12309808 12310380 -269883284 - L2 LINE L2 0 3313 2596 1974 69 4 15 chr1 12310398 12310659 -269883005 - AluY SINE Alu -4 307 50 746 143 17 8 chr1 12310660 12310779 -269882885 - AluJo/FLAM SINE Alu -192 120 1 331 352 137 7 chr1 12310780 12311050 -269882614 - L2 LINE L2 -774 2540 2236 662 262 79 12 chr1 12311227 12311330 -269882334 - MLT1D LTR MaLR 0 505 410 1898 141 4 0 chr1 12311330 12311607 -269882057 + AluSx SINE Alu 18 295 -17 662 262 79 12 chr1 12311607 12311751 -269881913 - MLT1D LTR MaLR -95 410 216 1722 96 4 0 chr1 12311783 12312012 -269881652 - AluSq SINE Alu -78 235 6 994 102 0 0 chr1 12312013 12312141 -269881523 - AluSq/x SINE Alu -175 138 11 880 207 46 50 chr1 12312149 12312410 -269881254 + MIR SINE MIR 1 260 -2 205 359 11 38 chr1 12312421 12312605 -269881059 - L2 LINE L2 -50 3222 3044 1380 143 120 23 chr1 12313160 12313442 -269880222 + AluJb SINE Alu 1 307 0 432 149 32 0 chr1 12313591 12313685 -269879979 + CT-rich Low_complexity Low_complexity 3 99 0 2165 118 0 6 chr1 12313736 12314050 -269879614 - AluSx SINE Alu 0 312 1 2229 114 0 0 chr1 12314428 12314734 -269878930 - AluSx SINE Alu -6 306 1 958 172 7 0 chr1 12314932 12315109 -269878555 - AluJo/FRAM SINE Alu 0 309 132 344 118 17 17 chr1 12315112 12315182 -269878482 + AluS SINE Alu 1 57 -246 2143 136 0 0 chr1 12315338 12315648 -269878016 + AluSx SINE Alu 1 310 -2 2053 119 20 0 chr1 12315809 12316102 -269877562 - AluSx SINE Alu -13 299 1 1982 117 7 17 chr1 12316984 12317282 -269876382 - AluSx SINE Alu -17 295 1 232 293 98 0 chr1 12317388 12317470 -269876194 + MIR SINE MIR 86 175 -87 2134 83 0 28 chr1 12317515 12317861 -269875803 + AluSg SINE Alu 1 338 0 637 204 161 0 chr1 12317955 12318117 -269875547 + MER5A DNA MER1_type 1 188 -1 518 312 15 30 chr1 12318254 12318456 -269875208 + MIR SINE MIR 11 209 -53 206 208 19 0 chr1 12319565 12319618 -269874046 + CT-rich Low_complexity Low_complexity 2 55 0 623 283 24 0 chr1 12319677 12319843 -269873821 + MIR SINE MIR 56 225 -37 230 307 53 0 chr1 12320285 12320393 -269873271 - MIR SINE MIR -61 147 31 213 39 0 0 chr1 12320815 12320841 -269872823 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 469 342 64 0 chr1 12321395 12321582 -269872082 - MIR SINE MIR -7 255 57 884 188 172 0 chr1 12321610 12321796 -269871868 - MER20 DNA MER1_type -1 218 1 2318 88 0 0 chr1 12321804 12322109 -269871555 - AluSg SINE Alu -5 305 1 1591 272 79 11 chr1 12322250 12322871 -269870793 - L1MC4 LINE L1 -142 7900 7238 2076 117 0 19 chr1 12322871 12323187 -269870477 - AluSx SINE Alu -2 310 1 1129 196 45 11 chr1 12323198 12323464 -269870200 - L1MC4 LINE L1 -954 7088 6814 29 0 0 0 chr1 12324108 12324137 -269869527 + AT_rich Low_complexity Low_complexity 1 29 0 2086 117 0 0 chr1 12324144 12324456 -269869208 + AluSx SINE Alu 1 312 0 1655 141 65 10 chr1 12324472 12324762 -269868902 - AluJo SINE Alu -6 306 1 2240 100 0 0 chr1 12324770 12325060 -269868604 - AluSg SINE Alu -20 290 1 1879 205 58 25 chr1 12325065 12325524 -269868140 - L1MC3 LINE L1 -21 7764 7287 2302 104 0 0 chr1 12325524 12325832 -269867832 + AluSx SINE Alu 1 308 -4 1879 205 58 25 chr1 12325832 12325851 -269867813 - L1MC3 LINE L1 -498 7287 7270 305 326 38 15 chr1 12325856 12325988 -269867676 - MIR SINE MIR -55 207 73 355 316 97 7 chr1 12326007 12326162 -269867502 - L1ME LINE L1 -352 5769 5601 261 283 171 13 chr1 12326276 12326428 -269867236 + MARNA DNA Mariner 217 392 -194 2506 57 0 0 chr1 12326430 12326730 -269866934 + AluSc SINE Alu 1 300 -9 2070 102 46 0 chr1 12326738 12327021 -269866643 + AluSx SINE Alu 1 296 -16 2192 108 0 7 chr1 12328001 12328308 -269865356 + AluSg SINE Alu 1 305 -5 2087 130 0 3 chr1 12329336 12329637 -269864027 + AluSx SINE Alu 1 300 -12 1688 32 0 28 chr1 12329855 12330072 -269863592 - SVA Other Other 0 1386 1176 26 30 0 0 chr1 12330269 12330302 -269863362 + AT_rich Low_complexity Low_complexity 1 33 0 252 77 0 0 chr1 12330510 12330549 -269863115 + (T)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 12330558 12330579 -269863085 + AT_rich Low_complexity Low_complexity 1 21 0 875 272 46 13 chr1 12330758 12330997 -269862667 + MIR SINE MIR 14 260 -2 224 359 39 0 chr1 12331555 12331633 -269862031 + MIR SINE MIR 132 212 -50 426 300 47 13 chr1 12331744 12331952 -269861712 - MIR3 SINE MIR -36 226 7 304 375 54 41 chr1 12332041 12332574 -269861090 + L2 LINE L2 2621 3180 -92 1280 123 0 11 chr1 12332719 12332906 -269860758 - AluSx SINE Alu -127 185 1 501 206 19 9 chr1 12334582 12334689 -269858975 + MER81 DNA DNA 5 112 -2 342 338 37 22 chr1 12334770 12334906 -269858758 + MIR SINE MIR 77 214 -48 537 327 111 30 chr1 12337217 12337468 -269856196 - L3 LINE CR1 -9 1568 1282 2332 85 0 10 chr1 12337468 12337773 -269855891 + AluSq SINE Alu 1 302 -11 537 327 111 30 chr1 12337773 12337854 -269855810 - L3 LINE CR1 -295 1282 1209 492 271 25 0 chr1 12339164 12339286 -269854378 + MIR SINE MIR 51 175 -87 290 341 166 12 chr1 12339720 12340051 -269853613 - L2 LINE L2 -96 3217 2836 2210 122 0 0 chr1 12340688 12340991 -269852673 + AluSx SINE Alu 1 303 -9 294 374 8 8 chr1 12341164 12341295 -269852369 - MIR SINE MIR -117 145 15 184 263 66 102 chr1 12341354 12341491 -269852173 - MIR SINE MIR -48 214 83 1892 131 7 17 chr1 12341615 12341913 -269851751 - AluJo SINE Alu 0 312 18 349 259 0 0 chr1 12342057 12342138 -269851526 - MIR3 SINE MIR -43 165 85 787 206 18 6 chr1 12342376 12342546 -269851118 + MER45A DNA AcHobo 7 178 0 670 272 111 17 chr1 12342693 12343116 -269850548 - MLT1G1 LTR MaLR 0 595 72 199 260 0 20 chr1 12343251 12343301 -269850363 - MIR SINE MIR -197 65 17 190 316 103 17 chr1 12343747 12343864 -269849800 - L2 LINE L2 -5 3267 3141 816 282 32 0 chr1 12343864 12344084 -269849580 - MIR SINE MIR -34 228 2 416 238 21 63 chr1 12344622 12344765 -269848899 - L2 LINE L2 -2 3270 3134 355 225 0 0 chr1 12344863 12344934 -269848730 + MIR SINE MIR 117 187 -75 203 262 180 0 chr1 12344942 12345003 -269848661 - L2 LINE L2 0 3313 3242 728 257 76 34 chr1 12345565 12345802 -269847862 - MIR SINE MIR -12 250 4 338 297 42 8 chr1 12346737 12346855 -269846809 - MIR3 SINE MIR -46 162 41 1902 155 0 19 chr1 12346963 12347273 -269846391 + AluSx SINE Alu 1 304 -8 327 254 41 49 chr1 12347285 12347407 -269846257 - L1ME4a LINE L1 -72 6049 5929 2414 53 0 38 chr1 12347407 12347727 -269845937 - AluY SINE Alu -3 308 1 539 310 125 34 chr1 12348720 12348906 -269844758 + L1ME LINE L1 4456 4624 -1522 2237 87 3 7 chr1 12348906 12349205 -269844459 + AluSc SINE Alu 1 298 -11 539 310 125 34 chr1 12349205 12349570 -269844094 + L1ME LINE L1 4624 5057 -1089 2142 141 0 0 chr1 12349572 12349884 -269843780 + AluJb SINE Alu 1 312 0 540 297 23 76 chr1 12349933 12350599 -269843065 + L1M3 LINE L1 4890 5518 -665 297 330 28 65 chr1 12351496 12351820 -269841844 + L1ME LINE L1 5469 5780 -382 2298 70 0 7 chr1 12352215 12352516 -269841148 + AluSg SINE Alu 1 299 -11 1206 112 0 0 chr1 12352520 12352681 -269840983 + AluSg/x SINE Alu 136 296 -14 937 274 161 13 chr1 12352699 12353089 -269840575 - L2 LINE L2 -3 3310 2863 24 32 0 0 chr1 12353153 12353184 -269840480 + AT_rich Low_complexity Low_complexity 1 31 0 721 185 37 0 chr1 12353226 12353361 -269840303 + FLAM_C SINE Alu 1 140 -3 1972 113 0 35 chr1 12353396 12353707 -269839957 + AluSx SINE Alu 1 300 -12 1959 145 14 0 chr1 12353707 12353997 -269839667 + AluJb SINE Alu 1 294 -18 381 238 31 31 chr1 12354241 12354279 -269839385 - MIR3 SINE MIR -12 196 160 499 304 71 0 chr1 12354279 12354463 -269839201 - MER117 DNA MER1_type 0 197 1 381 238 31 31 chr1 12354463 12354578 -269839086 - MIR3 SINE MIR -48 160 42 381 269 162 9 chr1 12355327 12355475 -269838189 + MER5A DNA MER1_type 7 188 -1 197 268 0 0 chr1 12355494 12355535 -269838129 + L2 LINE L2 3263 3303 -10 225 0 0 0 chr1 12355930 12355955 -269837709 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 290 340 33 26 chr1 12356413 12356566 -269837098 - L2 LINE L2 -200 3072 2919 857 180 9 68 chr1 12356728 12356950 -269836714 - MER20 DNA MER1_type -4 215 7 360 210 50 50 chr1 12357481 12357581 -269836083 + L2 LINE L2 3194 3293 -20 207 333 38 38 chr1 12358181 12358313 -269835351 - L2 LINE L2 -883 2431 2300 204 206 0 0 chr1 12359225 12359259 -269834405 - MIR SINE MIR -200 62 29 1540 113 106 68 chr1 12359265 12359558 -269834106 + AluJo SINE Alu 1 304 -8 23 33 0 0 chr1 12359884 12359914 -269833750 + GC_rich Low_complexity Low_complexity 1 30 0 194 339 108 15 chr1 12361658 12361853 -269831811 + L2 LINE L2 2546 2758 -556 375 291 112 63 chr1 12362266 12362489 -269831175 - MIR SINE MIR -13 249 16 189 0 0 0 chr1 12363136 12363157 -269830507 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1917 129 0 42 chr1 12363625 12363936 -269829728 - AluSx SINE Alu -14 298 1 2088 121 0 34 chr1 12363951 12364274 -269829390 - AluSx SINE Alu 0 312 1 627 284 191 34 chr1 12364296 12364603 -269829061 + L2 LINE L2 2890 3262 -51 922 189 122 10 chr1 12364603 12364799 -269828865 - MER20 DNA MER1_type -1 218 1 627 284 191 34 chr1 12364799 12364846 -269828818 + L2 LINE L2 3262 3300 -13 524 266 76 6 chr1 12365230 12365388 -269828276 + MIR SINE MIR 20 188 -74 490 314 0 7 chr1 12366020 12366160 -269827504 + MIR3 SINE MIR 3 141 -67 1140 49 0 0 chr1 12367085 12367228 -269826436 + (TTCTCC)n Simple_repeat Simple_repeat 3 145 0 2178 96 0 0 chr1 12367228 12367508 -269826156 - AluSx SINE Alu -32 280 1 299 321 66 0 chr1 12368165 12368302 -269825362 + MIR3 SINE MIR 30 175 -33 2118 97 0 14 chr1 12368893 12369206 -269824458 + AluSx SINE Alu 1 309 0 527 301 42 67 chr1 12369353 12369592 -269824072 - MIR SINE MIR -21 241 9 315 319 145 0 chr1 12369619 12369757 -269823907 - L2 LINE L2 -557 2757 2600 2121 106 0 13 chr1 12369965 12370267 -269823397 - AluSq SINE Alu -15 298 1 1027 114 0 0 chr1 12370636 12370776 -269822888 + AluSg/x SINE Alu 163 302 -8 505 291 73 55 chr1 12370777 12370997 -269822667 - MIR SINE MIR -8 254 31 401 317 41 0 chr1 12371274 12371397 -269822267 - MIR SINE MIR -17 245 118 249 317 85 0 chr1 12372011 12372093 -269821571 + L2 LINE L2 3143 3231 -41 294 260 104 15 chr1 12372526 12372651 -269821013 + MIR3 SINE MIR 29 160 -48 517 303 79 22 chr1 12372652 12372880 -269820784 + MIR SINE MIR 1 241 -21 886 124 0 29 chr1 12373108 12373245 -269820419 + FLAM_C SINE Alu 1 133 0 253 311 0 48 chr1 12374379 12374482 -269819182 - MIR SINE MIR -74 188 91 286 206 8 13 chr1 12374908 12374985 -269818679 - MIR3 SINE MIR -38 170 92 349 331 21 21 chr1 12375101 12375246 -269818418 + MIR SINE MIR 108 252 -10 343 340 80 25 chr1 12375357 12375519 -269818145 + L2 LINE L2 3106 3276 -37 268 319 175 9 chr1 12375501 12375523 -269818141 + MIR SINE MIR 32 49 -213 * 189 0 0 0 chr1 12375523 12375544 -269818120 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 268 319 175 9 chr1 12375544 12375711 -269817953 + MIR SINE MIR 49 251 -11 243 311 35 0 chr1 12376244 12376353 -269817311 + MIR SINE MIR 54 166 -63 359 337 72 28 chr1 12376355 12376407 -269817257 - L1M4 LINE L1 -2769 3377 3329 243 0 0 0 chr1 12376407 12376434 -269817230 + (TC)n Simple_repeat Simple_repeat 2 28 0 359 337 72 28 chr1 12376434 12376630 -269817034 - L1M4 LINE L1 -2817 3329 3118 1218 55 0 16 chr1 12376631 12376814 -269816850 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 210 303 84 35 chr1 12378927 12379069 -269814595 - L2 LINE L2 -220 3052 2904 418 288 41 34 chr1 12379457 12379603 -269814061 - MIR SINE MIR -101 161 15 2064 123 3 16 chr1 12380097 12380413 -269813251 - AluSx SINE Alu 0 312 1 509 276 11 44 chr1 12380463 12380644 -269813020 + MIR SINE MIR 8 182 -80 795 194 152 9 chr1 12380664 12380875 -269812789 - LTR16A1 LTR ERVL 0 457 217 296 235 31 41 chr1 12380865 12380963 -269812701 - LTR16A1 LTR ERVL -358 99 3 * 246 196 0 0 chr1 12380976 12381022 -269812642 + MIR SINE MIR 205 250 -12 205 326 99 7 chr1 12381244 12381385 -269812279 - L2 LINE L2 -153 3119 2966 544 211 13 39 chr1 12381975 12382131 -269811533 + L2 LINE L2 2910 3061 -211 214 174 139 35 chr1 12382139 12382225 -269811439 - L2 LINE L2 -179 3093 2999 347 242 133 8 chr1 12382310 12382430 -269811234 + L2 LINE L2 3138 3272 0 1311 283 102 1 chr1 12382530 12383050 -269810614 - L2 LINE L2 -4 3309 2732 1835 114 4 4 chr1 12383177 12383441 -269810223 + AluSx SINE Alu 41 304 -8 225 211 0 135 chr1 12384333 12384489 -269809175 + (CGGGG)n Simple_repeat Simple_repeat 2 136 0 318 153 0 0 chr1 12385209 12385268 -269808396 + (TG)n Simple_repeat Simple_repeat 2 60 0 217 250 0 0 chr1 12386074 12386130 -269807534 + CT-rich Low_complexity Low_complexity 1 56 0 1557 163 21 18 chr1 12386251 12386558 -269807106 + AluJo SINE Alu 1 308 0 233 321 74 74 chr1 12387018 12387314 -269806350 - L2 LINE L2 0 3272 2977 504 264 78 86 chr1 12388236 12388622 -269805042 - MLT1J LTR MaLR -19 492 110 277 214 18 0 chr1 12388583 12388639 -269805025 - LTR67 LTR ERVL -404 153 97 * 599 172 0 0 chr1 12388861 12388960 -269804704 + FLAM_C SINE Alu 41 139 -4 2274 83 7 0 chr1 12388979 12389269 -269804395 + AluSx SINE Alu 1 292 -20 933 119 0 15 chr1 12389269 12389403 -269804261 - AluJo/FLAM SINE Alu -170 132 1 465 177 21 135 chr1 12389480 12389672 -269803992 - MLT1D LTR MaLR -274 231 62 2350 129 131 32 chr1 12389742 12390105 -269803559 + LTR19A LTR ERV1 1 417 -69 2349 93 3 0 chr1 12390105 12390417 -269803247 - AluSp SINE Alu 0 313 1 2350 129 131 32 chr1 12390417 12390495 -269803169 + LTR19A LTR ERV1 417 486 0 1469 146 94 26 chr1 12390974 12391241 -269802423 - AluJb SINE Alu -27 285 1 1493 224 24 15 chr1 12391277 12391617 -269802047 + MLT1E2 LTR MaLR 107 449 -177 252 308 92 23 chr1 12391629 12391759 -269801905 - L2 LINE L2 -197 3075 2937 710 128 29 0 chr1 12391900 12392002 -269801662 - U6 snRNA snRNA -2 105 1 2186 112 0 3 chr1 12392299 12392602 -269801062 + AluSx SINE Alu 1 302 -10 405 234 38 13 chr1 12392673 12392790 -269800874 + MIR SINE MIR 25 145 -63 349 213 291 0 chr1 12392879 12393006 -269800658 - MER5A DNA MER1_type -16 173 10 2180 118 0 6 chr1 12393952 12394266 -269799398 - AluSx SINE Alu 0 312 1 2123 109 0 7 chr1 12394575 12394877 -269798787 - AluSq SINE Alu -13 300 1 460 143 12 0 chr1 12394958 12395042 -269798622 + MIR SINE MIR 66 150 -58 255 104 31 62 chr1 12395980 12396076 -269797588 + CT-rich Low_complexity Low_complexity 4 96 0 1883 149 3 16 chr1 12396281 12396597 -269797067 + AluJb SINE Alu 1 312 0 2867 263 59 17 chr1 12396641 12397424 -269796240 + L1ME3A LINE L1 4942 5797 -373 1930 160 7 0 chr1 12397424 12397724 -269795940 + AluSx SINE Alu 1 302 -10 2867 263 59 17 chr1 12397724 12398104 -269795560 + L1ME3A LINE L1 5797 6160 -10 366 234 307 0 chr1 12398142 12398360 -269795304 - L2 LINE L2 -675 2639 2355 385 270 103 107 chr1 12398827 12399060 -269794604 - MIR SINE MIR -14 248 17 2295 103 3 0 chr1 12399115 12399427 -269794237 - AluSq SINE Alu 0 313 1 803 156 0 43 chr1 12399427 12399568 -269794096 - AluJo SINE Alu -176 136 2 263 232 0 10 chr1 12400460 12400559 -269793105 + (CCCA)n Simple_repeat Simple_repeat 2 99 0 243 266 9 37 chr1 12400572 12400613 -269793051 + (TCCA)n Simple_repeat Simple_repeat 3 44 -64 1760 172 36 21 chr1 12400613 12400997 -269792667 - MLT1B LTR MaLR 0 390 1 243 266 9 37 chr1 12400997 12401064 -269792600 + (TCCA)n Simple_repeat Simple_repeat 44 108 0 542 15 15 0 chr1 12401089 12401156 -269792508 + (TCCA)n Simple_repeat Simple_repeat 1 68 0 2104 138 0 0 chr1 12401173 12401485 -269792179 - AluSx SINE Alu 0 312 1 328 313 9 9 chr1 12402152 12402264 -269791400 - L3 LINE CR1 -36 1541 1430 347 283 170 35 chr1 12402275 12402505 -269791159 - MIR SINE MIR 0 262 2 304 167 0 0 chr1 12403079 12403133 -269790531 + Alu SINE Alu 248 301 -1 333 219 10 52 chr1 12403256 12403352 -269790312 + L2 LINE L2 3222 3313 0 679 187 12 18 chr1 12403815 12403986 -269789678 + (TCCA)n Simple_repeat Simple_repeat 1 170 0 784 201 8 19 chr1 12404006 12404664 -269789000 + (TCCA)n Simple_repeat Simple_repeat 1 650 0 1182 216 131 21 chr1 12404810 12404841 -269788823 - LTR16C LTR ERVL 0 491 465 2127 171 26 28 chr1 12404841 12405232 -269788432 + MLT1B LTR MaLR 1 390 0 1182 216 131 21 chr1 12405232 12405529 -269788135 - LTR16C LTR ERVL -26 465 127 956 218 94 71 chr1 12405700 12405756 -269787908 - MLT1B LTR MaLR 0 390 337 2272 131 12 6 chr1 12405756 12406091 -269787573 - MER1B DNA MER1_type 0 337 1 956 218 94 71 chr1 12406091 12406206 -269787458 - MLT1B LTR MaLR -53 337 226 1578 171 25 4 chr1 12406206 12406487 -269787177 - AluJo SINE Alu -22 290 4 956 218 94 71 chr1 12406487 12406513 -269787151 - MLT1B LTR MaLR -164 226 202 2425 70 0 3 chr1 12406513 12406825 -269786839 - AluY SINE Alu 0 311 1 2225 98 3 0 chr1 12406825 12407122 -269786542 - AluSx SINE Alu -14 298 1 956 218 94 71 chr1 12407122 12407302 -269786362 - MLT1B LTR MaLR -187 203 1 1677 135 0 0 chr1 12407562 12407806 -269785858 - AluSx SINE Alu -16 296 53 2047 102 41 3 chr1 12407806 12408099 -269785565 + AluY SINE Alu 1 304 -7 449 70 0 0 chr1 12408099 12408156 -269785508 - AluSx SINE Alu -250 60 4 391 231 148 29 chr1 12408285 12408576 -269785088 - L2 LINE L2 -225 3047 2699 2393 87 0 0 chr1 12408630 12408942 -269784722 - AluSx SINE Alu 0 312 1 1323 242 92 38 chr1 12408985 12409304 -269784360 + Charlie4a DNA MER1_type 1 356 -1605 2364 77 0 0 chr1 12409304 12409604 -269784060 - AluSq SINE Alu -13 300 1 1323 242 92 38 chr1 12409604 12409764 -269783900 + Charlie4a DNA MER1_type 356 506 -2 980 263 80 40 chr1 12409766 12410262 -269783402 - MLT1K LTR MaLR -11 577 133 1194 130 24 93 chr1 12410324 12410571 -269783093 + MER30 DNA MER1_type 1 230 0 339 293 8 73 chr1 12410643 12410766 -269782898 - MIR SINE MIR -1 261 147 539 268 49 18 chr1 12411476 12411640 -269782024 - MIR SINE MIR -74 188 20 526 285 53 51 chr1 12411780 12412215 -269781449 - L1M4 LINE L1 -3385 2761 2326 1567 254 69 73 chr1 12412348 12413159 -269780505 - HAL1b LINE L1 -7 1341 534 2088 123 20 0 chr1 12413159 12413460 -269780204 - AluSx SINE Alu -5 307 1 670 209 8 22 chr1 12413463 12413597 -269780067 - FLAM_A SINE Alu -1 132 1 325 315 51 73 chr1 12413602 12413635 -269780029 - HAL1 LINE L1 -1508 999 967 7091 134 41 31 chr1 12413635 12413902 -269779762 - Tigger3b DNA MER2_type -1798 1230 967 2174 118 0 6 chr1 12413902 12414216 -269779448 + AluSx SINE Alu 1 312 0 7091 134 41 31 chr1 12414216 12414690 -269778974 - Tigger3b DNA MER2_type -2061 967 499 2268 106 0 0 chr1 12414690 12414991 -269778673 + AluSx SINE Alu 1 301 -11 7091 134 41 31 chr1 12414991 12415159 -269778505 - Tigger3b DNA MER2_type -2529 499 334 1870 148 3 7 chr1 12415159 12415463 -269778201 + AluJb SINE Alu 1 303 -9 7091 134 41 31 chr1 12415463 12415690 -269777974 - Tigger3b DNA MER2_type -2694 334 77 2148 87 30 10 chr1 12415690 12415990 -269777674 - AluSx SINE Alu -6 306 1 7091 134 41 31 chr1 12415990 12416065 -269777599 - Tigger3b DNA MER2_type -2951 77 4 325 315 51 73 chr1 12416065 12416209 -269777455 - HAL1 LINE L1 -1540 967 826 2046 113 0 0 chr1 12416536 12416841 -269776823 - AluSx SINE Alu 0 305 1 1068 226 47 7 chr1 12416841 12417097 -269776567 - L1MC/D LINE L1 -676 5508 5264 2174 77 35 3 chr1 12417097 12417383 -269776281 + AluSx SINE Alu 1 295 -17 2760 148 24 38 chr1 12417383 12417493 -269776171 - L1MC2 LINE L1 -11 6333 6223 1806 108 6 79 chr1 12417493 12417808 -269775856 - AluJb SINE Alu -20 292 1 2760 148 24 38 chr1 12417808 12418198 -269775466 - L1MC2 LINE L1 -121 6223 5840 1068 226 47 7 chr1 12418198 12418233 -269775431 - L1MC/D LINE L1 -919 5265 5265 282 87 0 0 chr1 12419543 12419589 -269774075 + (TC)n Simple_repeat Simple_repeat 2 47 0 225 0 0 0 chr1 12419589 12419614 -269774050 + (CA)n Simple_repeat Simple_repeat 1 25 0 2214 114 0 3 chr1 12419671 12419979 -269773685 + AluSq SINE Alu 1 307 -6 923 206 28 0 chr1 12419981 12420161 -269773503 - L1MDa LINE L1 -6340 200 16 607 328 66 43 chr1 12420181 12420620 -269773044 + L2 LINE L2 2819 3267 -5 253 290 123 45 chr1 12420737 12420892 -269772772 + MIR3 SINE MIR 14 180 -28 1234 179 94 55 chr1 12421067 12421128 -269772536 + MER33 DNA MER1_type 5 62 -2523 2163 121 0 13 chr1 12421128 12421441 -269772223 + AluSx SINE Alu 1 309 -3 1234 179 94 55 chr1 12421441 12421687 -269771977 + MER33 DNA MER1_type 62 324 0 334 323 44 6 chr1 12421826 12421984 -269771680 - MIR SINE MIR -35 227 64 2209 103 0 3 chr1 12422090 12422392 -269771272 - AluSg SINE Alu -8 302 2 240 359 39 0 chr1 12422449 12422552 -269771112 - MIR SINE MIR -21 241 135 2007 98 29 0 chr1 12422554 12422855 -269770809 + AluSx SINE Alu 1 309 0 354 197 239 51 chr1 12422950 12423067 -269770597 - MLT1K LTR MaLR -1 587 449 624 289 39 19 chr1 12423240 12423448 -269770216 - MLT1K LTR MaLR -355 233 22 190 319 33 11 chr1 12423837 12423928 -269769736 - L2 LINE L2 -24 3289 3197 2389 62 3 10 chr1 12424611 12424916 -269768748 - AluSq SINE Alu -10 303 1 448 232 159 0 chr1 12424919 12425070 -269768594 - L1ME LINE L1 -347 5819 5645 2214 96 3 6 chr1 12425185 12425497 -269768167 - AluSx SINE Alu -1 311 1 437 288 125 0 chr1 12426218 12426378 -269767286 - MIR SINE MIR -70 192 13 1576 188 10 29 chr1 12426402 12426711 -269766953 - AluJb SINE Alu -9 303 1 839 241 74 14 chr1 12427016 12427334 -269766330 - MLT1G LTR MaLR 0 590 167 1016 98 0 0 chr1 12427355 12427488 -269766176 - AluSq/x SINE Alu -180 133 1 891 141 0 0 chr1 12427499 12427693 -269765971 + (GA)n Simple_repeat Simple_repeat 1 194 0 396 167 0 0 chr1 12427694 12427790 -269765874 + GA-rich Low_complexity Low_complexity 2 97 0 480 269 79 34 chr1 12427790 12428012 -269765652 - MLT1G1 LTR MaLR -370 206 1 823 248 26 43 chr1 12428112 12428342 -269765322 + MIR SINE MIR 12 237 -25 2322 87 0 10 chr1 12428710 12429022 -269764642 - AluSg SINE Alu -1 309 1 331 285 53 33 chr1 12429030 12429181 -269764483 - L1MC5 LINE L1 -36 7925 7772 323 286 9 0 chr1 12429178 12429283 -269764381 - L1MA10 LINE L1 0 6334 6229 * 237 225 14 14 chr1 12429363 12429434 -269764230 - L1ME LINE L1 -237 5927 5857 2084 112 3 0 chr1 12430001 12430296 -269763368 - AluSp SINE Alu -17 296 1 2140 95 7 3 chr1 12430534 12430830 -269762834 + AluSq SINE Alu 1 297 -16 2184 117 0 0 chr1 12431091 12431399 -269762265 - AluSx SINE Alu -4 308 1 1837 197 8 16 chr1 12431710 12432096 -269761568 - L1PB4 LINE L1 0 6156 5774 2234 96 0 0 chr1 12432135 12432427 -269761237 - AluSx SINE Alu -20 292 1 263 286 30 75 chr1 12432557 12432690 -269760974 + HAL1 LINE L1 945 1071 -1436 405 248 81 43 chr1 12432691 12432852 -269760812 + LTR41 LTR ERVL 1 167 -606 2231 79 0 3 chr1 12432859 12433180 -269760484 - AluSg SINE Alu 0 320 1 466 205 25 10 chr1 12433474 12433605 -269760059 - L1ME LINE L1 -374 5790 5652 944 184 5 5 chr1 12433608 12433793 -269759871 - AluJo SINE Alu -2 310 126 380 195 25 14 chr1 12433793 12433904 -269759760 - L1M4 LINE L1 -482 5684 5579 650 274 159 26 chr1 12434090 12434517 -269759147 + HAL1 LINE L1 1596 2079 -428 1753 236 72 9 chr1 12435728 12436160 -269757504 + L1ME1 LINE L1 5618 6076 -90 905 150 0 0 chr1 12436174 12436307 -269757357 - AluSx SINE Alu -138 174 42 559 216 12 37 chr1 12436446 12436608 -269757056 + L2 LINE L2 2910 3067 -205 205 167 156 33 chr1 12436606 12436696 -269756968 - L2 LINE L2 -173 3099 2999 * 347 242 133 8 chr1 12436781 12436901 -269756763 + L2 LINE L2 3138 3272 0 1326 286 102 1 chr1 12437001 12437521 -269756143 - L2 LINE L2 -4 3309 2732 1885 108 4 4 chr1 12437648 12437916 -269755748 + AluSx SINE Alu 41 308 -4 225 211 0 135 chr1 12438808 12438964 -269754700 + (CGGGG)n Simple_repeat Simple_repeat 2 136 0 372 138 0 0 chr1 12439684 12439749 -269753915 + (TG)n Simple_repeat Simple_repeat 2 66 0 217 250 0 0 chr1 12440555 12440611 -269753053 + CT-rich Low_complexity Low_complexity 1 56 0 1557 163 21 18 chr1 12440732 12441039 -269752625 + AluJo SINE Alu 1 308 0 233 321 74 74 chr1 12441499 12441795 -269751869 - L2 LINE L2 0 3272 2977 504 264 78 86 chr1 12442717 12443103 -269750561 - MLT1J LTR MaLR -19 492 110 277 214 18 0 chr1 12443064 12443120 -269750544 - LTR67 LTR ERVL -404 153 97 * 599 172 0 0 chr1 12443342 12443441 -269750223 + FLAM_C SINE Alu 41 139 -4 2081 125 0 0 chr1 12443460 12443778 -269749886 + AluSx SINE Alu 1 318 0 802 175 81 6 chr1 12443783 12443943 -269749721 - MER20 DNA MER1_type -47 172 1 244 279 47 23 chr1 12444004 12444090 -269749574 - MIR SINE MIR -58 150 80 1997 138 23 0 chr1 12444384 12444689 -269748975 - AluSx SINE Alu 0 312 1 561 226 23 45 chr1 12444766 12444899 -269748765 + MER63A DNA MER1_type 36 165 -45 430 286 37 48 chr1 12444952 12445137 -269748527 - MIR SINE MIR -56 152 7 2393 54 10 0 chr1 12445285 12445583 -269748081 + AluY SINE Alu 1 301 -10 411 276 109 48 chr1 12445663 12445901 -269747763 - MIR SINE MIR -10 252 7 225 0 0 0 chr1 12446101 12446126 -269747538 + (GCTG)n Simple_repeat Simple_repeat 4 28 0 2339 75 0 10 chr1 12446128 12446434 -269747230 - AluY SINE Alu -8 303 1 197 202 67 67 chr1 12446843 12446932 -269746732 + MIR SINE MIR 43 131 -77 372 207 145 35 chr1 12447521 12447705 -269745959 + MIR SINE MIR 50 260 -2 996 216 27 61 chr1 12447848 12448066 -269745598 - MER58B DNA MER1_type -2079 341 117 2115 98 7 0 chr1 12448066 12448362 -269745302 - AluSp SINE Alu -15 298 1 996 216 27 61 chr1 12448362 12448416 -269745248 - MER58B DNA MER1_type -2303 117 77 1794 161 0 25 chr1 12448416 12448732 -269744932 + AluJo SINE Alu 5 312 0 996 216 27 61 chr1 12448732 12448755 -269744909 - MER58B DNA MER1_type -2343 77 55 1080 236 20 20 chr1 12448790 12449040 -269744624 - MIR SINE MIR -5 257 8 819 285 31 0 chr1 12450086 12450314 -269743350 - MIR SINE MIR 0 262 28 188 415 51 0 chr1 12450610 12450728 -269742936 + MIR SINE MIR 58 181 -81 197 250 50 0 chr1 12451048 12451108 -269742556 + L2 LINE L2 3251 3313 0 1885 128 3 40 chr1 12451167 12451471 -269742193 - AluSx SINE Alu -19 293 1 375 196 0 54 chr1 12452129 12452221 -269741443 - Charlie8 DNA MER1_type -2256 161 75 240 35 0 0 chr1 12452229 12452258 -269741406 + (CCA)n Simple_repeat Simple_repeat 1 29 0 558 263 142 68 chr1 12452282 12452334 -269741330 - L2 LINE L2 -49 3223 3176 946 103 0 22 chr1 12452334 12452470 -269741194 + FLAM_C SINE Alu 1 133 0 558 263 142 68 chr1 12452470 12453059 -269740605 - L2 LINE L2 -96 3176 2512 2107 107 3 19 chr1 12453059 12453369 -269740295 - AluSq SINE Alu -8 305 1 558 263 142 68 chr1 12453369 12453544 -269740120 - L2 LINE L2 -760 2512 2351 1302 198 99 0 chr1 12453547 12453830 -269739834 + AluJb SINE Alu 1 311 -1 532 141 0 0 chr1 12453830 12453908 -269739756 - FLAM_A SINE Alu -31 111 34 444 187 132 9 chr1 12453959 12454093 -269739571 - MIR SINE MIR -63 145 15 279 0 0 0 chr1 12454801 12454832 -269738832 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2250 94 0 0 chr1 12455069 12455366 -269738298 + AluSx SINE Alu 1 297 -15 902 148 77 0 chr1 12456247 12456402 -269737262 + FRAM SINE Alu 1 161 -15 310 316 127 26 chr1 12456980 12457208 -269736456 - L2 LINE L2 -91 3181 2931 1299 164 0 5 chr1 12457210 12457429 -269736235 + AluSg/x SINE Alu 87 304 -8 327 257 193 12 chr1 12457485 12457656 -269736008 + L2 LINE L2 586 787 -2527 504 262 0 60 chr1 12457665 12457707 -269735957 - MER58B DNA MER1_type -2079 341 298 1201 196 98 18 chr1 12457707 12457983 -269735681 - AluJb SINE Alu -14 298 1 504 262 0 60 chr1 12457983 12458089 -269735575 - MER58B DNA MER1_type -2122 298 202 291 197 91 0 chr1 12458117 12458183 -269735481 + L2 LINE L2 790 861 -2453 316 328 105 61 chr1 12458183 12458420 -269735244 + L2 LINE L2 973 1227 -2087 1562 175 0 7 chr1 12458420 12458689 -269734975 + AluSx SINE Alu 1 267 -45 316 328 105 61 chr1 12458689 12458747 -269734917 + L2 LINE L2 1227 1281 -2033 1231 228 126 17 chr1 12458755 12459111 -269734553 - MLT1D LTR MaLR 0 505 111 2129 96 13 13 chr1 12459208 12459533 -269734131 - AluSx SINE Alu 0 312 1 860 212 0 0 chr1 12459567 12459718 -269733946 - FRAM SINE Alu -11 155 5 1105 245 114 8 chr1 12459722 12460081 -269733583 + L2 LINE L2 1297 1693 -1621 3617 167 24 36 chr1 12460082 12460422 -269733242 + L1MB3 LINE L1 5438 5781 -402 2354 89 0 0 chr1 12460422 12460725 -269732939 + AluSx SINE Alu 1 303 -9 3617 167 24 36 chr1 12460725 12461009 -269732655 + L1MB3 LINE L1 5781 6054 -129 1811 138 48 3 chr1 12461009 12461300 -269732364 + AluJo SINE Alu 1 304 -8 3617 167 24 36 chr1 12461300 12461398 -269732266 + L1MB3 LINE L1 6054 6152 -31 1969 82 4 0 chr1 12461447 12461702 -269731962 + AluSq SINE Alu 40 295 -18 1245 255 95 21 chr1 12461712 12462230 -269731434 + L2 LINE L2 1682 2237 -1077 383 280 91 7 chr1 12462768 12462911 -269730753 + LTR33 LTR ERVL 1 155 -366 * 1081 245 133 22 chr1 12462889 12463334 -269730330 + LTR1B LTR ERV1 7 482 -19 244 224 45 45 chr1 12463544 12463611 -269730053 + LTR33 LTR ERVL 153 219 -302 216 253 23 58 chr1 12463848 12463935 -269729729 + MIR SINE MIR 113 196 -66 737 117 5 203 chr1 12464382 12464552 -269729112 + AluJb SINE Alu 136 264 -48 2451 57 0 3 chr1 12464552 12464853 -269728811 - AluY SINE Alu -11 300 1 737 117 5 203 chr1 12464853 12464879 -269728785 + AluJb SINE Alu 264 293 -19 691 235 48 48 chr1 12464889 12465119 -269728545 + MIR SINE MIR 33 262 0 577 267 111 19 chr1 12465132 12465394 -269728270 - L2 LINE L2 -55 3258 2973 1956 133 31 0 chr1 12465449 12465743 -269727921 - AluSx SINE Alu -9 303 1 829 127 0 16 chr1 12465836 12465962 -269727702 + FLAM_C SINE Alu 3 126 -17 490 94 0 0 chr1 12465975 12466039 -269727625 + AluJ/FRAM SINE Alu 226 289 -23 196 304 0 43 chr1 12466074 12466143 -269727521 - MIR SINE MIR -71 191 126 323 276 57 32 chr1 12466355 12466478 -269727186 + MIR3 SINE MIR 31 156 -52 2276 110 0 0 chr1 12466506 12466816 -269726848 - AluY SINE Alu -1 310 1 1204 211 41 22 chr1 12466896 12467214 -269726450 + MER33 DNA MER1_type 1 324 0 381 227 108 59 chr1 12467258 12467461 -269726203 + L2 LINE L2 3061 3273 -40 1489 163 4 40 chr1 12467476 12467615 -269726049 + AluJo SINE Alu 10 136 -176 2114 100 24 0 chr1 12467615 12467904 -269725760 + AluSx SINE Alu 1 296 -16 1489 163 4 40 chr1 12467904 12468040 -269725624 + AluJo SINE Alu 136 275 -37 253 232 0 0 chr1 12468063 12468119 -269725545 + L2 LINE L2 3258 3313 0 216 0 0 0 chr1 12468141 12468165 -269725499 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 447 273 30 6 chr1 12468683 12468848 -269724816 - Charlie8 DNA MER1_type -2248 169 1 894 78 0 47 chr1 12469062 12469088 -269724576 - FLAM_C SINE Alu -179 133 107 2534 134 3 6 chr1 12469088 12469453 -269724211 - THE1B LTR MaLR 0 364 1 10528 114 48 2 chr1 12469453 12470535 -269723129 - THE1B-int LTR MaLR 0 1580 407 2356 76 0 16 chr1 12470535 12470850 -269722814 - AluY SINE Alu -1 310 1 10528 114 48 2 chr1 12470850 12471277 -269722387 - THE1B-int LTR MaLR -1173 407 1 2672 105 3 22 chr1 12471277 12471350 -269722314 - THE1B LTR MaLR 0 364 291 2124 117 10 0 chr1 12471350 12471650 -269722014 + AluSc SINE Alu 1 303 -6 2672 105 3 22 chr1 12471650 12471947 -269721717 - THE1B LTR MaLR -73 291 1 894 78 0 47 chr1 12471947 12472046 -269721618 - FLAM_C SINE Alu -202 110 12 1572 209 77 5 chr1 12472077 12472382 -269721282 - MER21B LTR ERV1 -52 811 470 2073 123 7 0 chr1 12472382 12472684 -269720980 - AluSg SINE Alu -6 304 1 1572 209 77 5 chr1 12472684 12472770 -269720894 - MER21B LTR ERV1 -393 470 392 2221 88 7 3 chr1 12472791 12473088 -269720576 - AluY SINE Alu -13 298 1 808 247 10 81 chr1 12473101 12473397 -269720267 - MER21B LTR ERV1 -573 290 16 2123 113 3 25 chr1 12473404 12473722 -269719942 + AluSx SINE Alu 1 311 -1 1156 155 43 31 chr1 12473722 12473849 -269719815 + L1MA7 LINE L1 6024 6148 -143 2478 30 0 7 chr1 12473849 12474147 -269719517 + AluY SINE Alu 1 296 -15 1156 155 43 31 chr1 12474147 12474277 -269719387 + L1MA7 LINE L1 6148 6284 -7 1848 127 0 0 chr1 12474296 12474563 -269719101 + AluSx SINE Alu 9 275 -37 252 0 0 0 chr1 12474567 12474595 -269719069 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1472 193 60 17 chr1 12474648 12475001 -269718663 - L1ME1 LINE L1 -218 5948 5581 1433 144 53 42 chr1 12475057 12475341 -269718323 - AluJo SINE Alu -25 287 1 2073 113 0 10 chr1 12475351 12475651 -269718013 - AluSx SINE Alu -15 297 1 180 162 0 27 chr1 12475657 12475694 -269717970 - MER5A DNA MER1_type -117 72 37 388 284 223 14 chr1 12476046 12476239 -269717425 - L2 LINE L2 -5 3308 3157 2054 102 31 0 chr1 12476239 12476533 -269717131 - AluSx SINE Alu -9 303 1 388 284 223 14 chr1 12476533 12476617 -269717047 - L2 LINE L2 -156 3157 2973 912 214 54 11 chr1 12476634 12476914 -269716750 + MER33 DNA MER1_type 24 315 -9 282 286 251 12 chr1 12476917 12477176 -269716488 - L2 LINE L2 -338 2976 2656 225 244 25 25 chr1 12477517 12477636 -269716028 + (CCGGG)n Simple_repeat Simple_repeat 5 123 0 2051 114 3 23 chr1 12479148 12479447 -269714217 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr1 12480079 12480104 -269713560 + (T)n Simple_repeat Simple_repeat 1 25 0 2351 96 0 0 chr1 12480444 12480747 -269712917 - AluSx SINE Alu -9 303 1 822 183 79 0 chr1 12480805 12480969 -269712695 - MER20 DNA MER1_type -1 218 42 2237 103 10 3 chr1 12481207 12481518 -269712146 + AluSq SINE Alu 1 313 0 422 240 151 11 chr1 12482130 12482309 -269711355 + MIR SINE MIR 49 252 -10 2406 76 13 0 chr1 12482738 12483040 -269710624 + AluSq SINE Alu 1 306 -7 2004 143 0 7 chr1 12483824 12484124 -269709540 - AluJb SINE Alu -14 298 1 679 279 68 8 chr1 12484196 12484433 -269709231 + MIR SINE MIR 11 261 -1 444 208 0 0 chr1 12484495 12484596 -269709068 + (TATG)n Simple_repeat Simple_repeat 2 102 0 1377 166 0 14 chr1 12484702 12484925 -269708739 + AluJb SINE Alu 54 273 -39 1890 148 0 26 chr1 12484978 12485281 -269708383 + AluJb SINE Alu 1 295 -17 1904 135 17 3 chr1 12485315 12485611 -269708053 + AluJb SINE Alu 1 300 -12 23 0 0 0 chr1 12485635 12485658 -269708006 + AT_rich Low_complexity Low_complexity 1 23 0 1010 159 0 0 chr1 12485735 12485886 -269707778 + FRAM SINE Alu 3 153 -23 25 31 0 0 chr1 12485889 12485921 -269707743 + AT_rich Low_complexity Low_complexity 1 32 0 319 250 48 32 chr1 12485921 12486045 -269707619 + MIR SINE MIR 95 220 -42 1851 153 10 13 chr1 12486071 12486371 -269707293 - AluJo SINE Alu -10 302 4 1905 154 10 10 chr1 12486575 12486880 -269706784 - AluJb SINE Alu -7 305 1 2481 95 0 0 chr1 12487754 12488060 -269705604 + AluSq SINE Alu 1 306 -7 1991 142 0 19 chr1 12488366 12488684 -269704980 - AluJo SINE Alu 0 312 1 204 300 88 0 chr1 12488925 12489005 -269704659 + L2 LINE L2 3169 3255 -17 350 216 56 40 chr1 12489289 12489414 -269704250 - MER5A DNA MER1_type -37 152 26 567 169 305 0 chr1 12489437 12489591 -269704073 + MER58C DNA MER1_type 2 202 -13 445 273 51 17 chr1 12490165 12490341 -269703323 + MER5A DNA MER1_type 8 189 0 2324 103 0 6 chr1 12490384 12490696 -269702968 - AluSx SINE Alu -2 310 1 192 40 0 0 chr1 12490701 12490726 -269702938 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 837 165 0 71 chr1 12490726 12490896 -269702768 - AluJo SINE Alu -32 280 123 675 124 0 0 chr1 12490953 12491050 -269702614 + AluJ/FLAM SINE Alu 3 99 -213 382 216 23 16 chr1 12492375 12492487 -269701177 + MIR3 SINE MIR 56 168 -40 720 187 0 0 chr1 12492867 12493001 -269700663 - L1MB7 LINE L1 -13 6171 6038 888 167 0 61 chr1 12493018 12493198 -269700466 + FRAM SINE Alu 1 168 -8 1230 158 59 9 chr1 12493198 12493419 -269700245 - L1MB7 LINE L1 -168 6016 5785 2841 187 64 33 chr1 12493419 12493774 -269699890 - MER67B LTR ERV1 0 661 276 1413 130 39 17 chr1 12493774 12494005 -269699659 + MER46A DNA MER2_type 1 236 0 2841 187 64 33 chr1 12494005 12494290 -269699374 - MER67B LTR ERV1 -385 276 1 1578 180 24 0 chr1 12494290 12494585 -269699079 - L1MB7 LINE L1 -396 5788 5487 1960 99 37 15 chr1 12494599 12494871 -269698793 + AluSx SINE Alu 18 295 -17 231 211 0 0 chr1 12494918 12494975 -269698689 + A-rich Low_complexity Low_complexity 1 57 0 723 201 15 21 chr1 12494975 12495141 -269698523 - L1MB7 LINE L1 -671 5503 5325 1343 97 0 0 chr1 12495145 12495320 -269698344 - AluSg/x SINE Alu -12 300 126 2226 81 10 19 chr1 12495320 12495630 -269698034 - AluSq SINE Alu -6 307 1 563 180 72 22 chr1 12495630 12495754 -269697910 - L1MB7 LINE L1 -812 5334 5201 1644 189 10 20 chr1 12495754 12496086 -269697578 - AluJo SINE Alu 0 312 1 563 180 72 22 chr1 12496086 12496100 -269697564 - L1MB7 LINE L1 -945 5201 5189 363 78 0 0 chr1 12496388 12496439 -269697225 + (CATAA)n Simple_repeat Simple_repeat 2 52 0 210 250 0 0 chr1 12496985 12497029 -269696635 - MIR SINE MIR -111 151 108 194 322 60 40 chr1 12497026 12497175 -269696489 + L2 LINE L2 2131 2282 -1032 * 1758 214 77 3 chr1 12497211 12497590 -269696074 - MER21B LTR ERV1 -26 837 431 793 168 74 141 chr1 12497658 12497914 -269695750 - MER21B LTR ERV1 -614 249 11 329 151 12 58 chr1 12498018 12498104 -269695560 - MIR SINE MIR -2 260 179 562 228 184 0 chr1 12498217 12498375 -269695289 + MER58A DNA MER1_type 2 188 -36 298 229 0 0 chr1 12498399 12498460 -269695204 + MER58B DNA MER1_type 245 305 -36 298 229 0 0 chr1 12498484 12498545 -269695119 + MER58B DNA MER1_type 245 305 -36 398 232 21 0 chr1 12498569 12498664 -269695000 + MER58B DNA MER1_type 245 341 0 1318 240 104 12 chr1 12499280 12499692 -269693972 - MLT1C LTR MaLR -12 455 6 316 221 0 15 chr1 12499856 12499924 -269693740 - MER2 DNA MER2_type 0 345 279 2313 125 0 0 chr1 12499931 12500242 -269693422 + AluSx SINE Alu 1 311 -1 229 200 0 0 chr1 12500258 12500313 -269693351 + A-rich Low_complexity Low_complexity 1 55 0 2429 90 3 0 chr1 12500318 12500617 -269693047 + AluSp SINE Alu 1 300 -13 1129 147 25 15 chr1 12500621 12500819 -269692845 - MER2 DNA MER2_type -145 200 1 329 305 45 57 chr1 12500932 12501109 -269692555 + L2 LINE L2 3096 3270 -2 890 137 0 0 chr1 12501658 12501782 -269691882 - FLAM_C SINE Alu -19 124 1 2254 118 0 13 chr1 12501955 12502269 -269691395 - AluSx SINE Alu -2 310 1 2434 90 0 0 chr1 12502385 12502686 -269690978 - AluSx SINE Alu -10 302 2 470 281 142 11 chr1 12502704 12502978 -269690686 + L1MC4a LINE L1 5763 6072 -1736 2225 117 7 0 chr1 12503053 12503360 -269690304 + AluSc SINE Alu 1 309 0 25 0 0 0 chr1 12503360 12503385 -269690279 + AT_rich Low_complexity Low_complexity 1 25 0 721 163 47 23 chr1 12503494 12503623 -269690041 + FLAM_C SINE Alu 1 132 -1 180 0 0 0 chr1 12504132 12504152 -269689512 + (T)n Simple_repeat Simple_repeat 1 20 0 1273 201 23 4 chr1 12506473 12506737 -269686927 - AluJb SINE Alu -2 310 42 1864 148 41 0 chr1 12506755 12507045 -269686619 - AluJo SINE Alu -10 302 1 2659 58 0 0 chr1 12507457 12507766 -269685898 - AluY SINE Alu -2 309 1 702 198 33 66 chr1 12508889 12509071 -269684593 - MER3 DNA MER1_type 0 209 34 3177 207 26 20 chr1 12509577 12509781 -269683883 + MER82 DNA MER2_type 1 202 -451 2458 159 14 31 chr1 12509781 12510140 -269683524 + MER47B DNA MER2_type 1 353 -1970 2166 138 0 0 chr1 12510140 12510445 -269683219 - AluSx SINE Alu -7 305 1 2458 159 14 31 chr1 12510445 12510507 -269683157 + MER47B DNA MER2_type 353 415 -3 3177 207 26 20 chr1 12510507 12510950 -269682714 + MER82 DNA MER2_type 202 652 -1 15890 112 25 27 chr1 12511310 12512756 -269680908 + Tigger1 DNA MER2_type 1 1448 -970 685 187 8 0 chr1 12512756 12512879 -269680785 - FLAM_C SINE Alu -9 124 1 15890 112 25 27 chr1 12512879 12513318 -269680346 + Tigger1 DNA MER2_type 1448 1886 -532 1994 152 0 19 chr1 12513318 12513634 -269680030 + AluJo SINE Alu 1 310 -2 15890 112 25 27 chr1 12513634 12514170 -269679494 + Tigger1 DNA MER2_type 1886 2418 0 24 32 0 0 chr1 12514837 12514868 -269678796 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr1 12515380 12515412 -269678252 + AT_rich Low_complexity Low_complexity 1 32 0 1675 163 43 0 chr1 12515412 12515688 -269677976 - AluSx SINE Alu -21 291 4 189 0 0 0 chr1 12515691 12515712 -269677952 + (T)n Simple_repeat Simple_repeat 1 21 0 1957 146 3 27 chr1 12517307 12517608 -269676056 + AluJo SINE Alu 1 294 -18 2225 125 20 0 chr1 12517616 12517921 -269675743 + AluSx SINE Alu 1 311 -1 1013 163 6 11 chr1 12518159 12518337 -269675327 - AluJb SINE Alu -15 297 121 2342 100 7 0 chr1 12518829 12519130 -269674534 + AluSx SINE Alu 2 304 -8 1873 146 25 0 chr1 12519351 12519632 -269674032 + AluJo SINE Alu 1 288 -24 342 0 0 0 chr1 12519834 12519872 -269673792 + (TG)n Simple_repeat Simple_repeat 2 39 0 2115 202 59 14 chr1 12520836 12521345 -269672319 - L1MB7 LINE L1 -1 6183 5652 522 163 51 10 chr1 12521385 12521483 -269672181 - L1MB7 LINE L1 -507 5677 5576 2234 107 3 0 chr1 12521483 12521781 -269671883 - AluSx SINE Alu -13 299 1 1271 204 115 4 chr1 12521783 12522053 -269671611 - AluJo SINE Alu -2 300 1 237 305 8 85 chr1 12522161 12522242 -269671422 - L2 LINE L2 -42 3230 3159 1948 118 0 73 chr1 12522242 12522378 -269671286 + AluSx SINE Alu 2 146 -166 2296 119 0 0 chr1 12522378 12522689 -269670975 + AluSx SINE Alu 1 311 -1 1948 118 0 73 chr1 12522689 12522867 -269670797 + AluSx SINE Alu 146 293 -19 237 305 8 85 chr1 12522867 12522903 -269670761 - L2 LINE L2 -113 3159 3122 2358 97 0 13 chr1 12525703 12526014 -269667650 - AluSq SINE Alu -4 309 3 1899 128 45 3 chr1 12527942 12528230 -269665434 - AluSx SINE Alu -12 300 1 44 63 0 0 chr1 12528315 12528394 -269665270 + AT_rich Low_complexity Low_complexity 1 79 0 1020 234 86 87 chr1 12528418 12529154 -269664510 - L1MC5 LINE L1 -61 7900 7246 358 179 28 47 chr1 12529208 12529314 -269664350 - L1MC5 LINE L1 -764 7197 7094 1944 141 3 3 chr1 12529331 12529629 -269664035 - AluJb SINE Alu -14 298 1 186 225 0 0 chr1 12530804 12530844 -269662820 + L2 LINE L2 1700 1739 -1575 201 216 0 0 chr1 12531431 12531468 -269662196 + MIR SINE MIR 99 135 -73 632 283 118 34 chr1 12531609 12531846 -269661818 + MIR SINE MIR 6 262 0 427 247 132 37 chr1 12532580 12532702 -269660962 - L1MC5 LINE L1 -35 7926 7817 2144 98 4 0 chr1 12532702 12533025 -269660639 - AluSx SINE Alu 0 330 7 427 247 132 37 chr1 12533025 12533197 -269660467 - L1MC5 LINE L1 -144 7817 7603 1029 86 25 0 chr1 12533371 12533533 -269660131 + (TTTCC)n Simple_repeat Simple_repeat 4 169 0 1998 132 0 0 chr1 12533539 12533819 -269659845 - AluSx SINE Alu -32 280 1 443 235 104 52 chr1 12533829 12534080 -269659584 - L1MC5 LINE L1 -384 7577 7314 2006 159 0 0 chr1 12534293 12534602 -269659062 - AluSx SINE Alu -3 309 1 267 278 211 0 chr1 12534831 12534921 -269658743 - L2 LINE L2 -2 3270 3162 261 222 12 86 chr1 12535901 12535982 -269657682 - MER5A DNA MER1_type -2 187 113 545 214 0 46 chr1 12536069 12536200 -269657464 + MER94 DNA DNA 1 125 -9 1974 163 0 0 chr1 12536282 12536583 -269657081 - AluSx SINE Alu -11 301 1 30 27 0 0 chr1 12536666 12536703 -269656961 + AT_rich Low_complexity Low_complexity 1 37 0 824 158 0 0 chr1 12536704 12536824 -269656840 - FLAM_C SINE Alu -23 120 1 1845 131 67 3 chr1 12537113 12537395 -269656269 + AluJb SINE Alu 1 300 -12 2435 68 0 3 chr1 12537883 12538179 -269655485 + AluY SINE Alu 2 296 -15 1404 179 37 15 chr1 12538793 12539066 -269654598 + AluJo SINE Alu 6 284 -28 355 288 44 44 chr1 12539118 12539278 -269654386 + MIR3 SINE MIR 40 199 -9 2389 90 0 10 chr1 12539418 12539728 -269653936 + AluSq SINE Alu 1 307 -6 322 266 93 58 chr1 12539793 12539877 -269653787 - MER5B DNA MER1_type -34 144 52 2091 139 7 3 chr1 12539877 12540180 -269653484 - AluSx SINE Alu -8 304 1 322 266 93 58 chr1 12540180 12540234 -269653430 - MER5B DNA MER1_type -126 52 1 2638 185 74 25 chr1 12541479 12541973 -269651691 - MER119 DNA MER1_type 0 583 58 2351 66 3 3 chr1 12541973 12542262 -269651402 + AluSc SINE Alu 1 289 -20 2638 185 74 25 chr1 12542262 12542319 -269651345 - MER119 DNA MER1_type -525 58 5 1972 131 10 10 chr1 12542382 12542687 -269650977 + AluJb SINE Alu 1 305 -7 29 28 0 0 chr1 12542740 12542776 -269650888 + AT_rich Low_complexity Low_complexity 1 36 0 894 275 130 17 chr1 12543355 12543832 -269649832 - L1ME3A LINE L1 -223 5947 5417 437 289 12 50 chr1 12543995 12544237 -269649427 - L1ME LINE L1 -342 5779 5547 215 211 0 19 chr1 12545074 12545126 -269648538 - MIR SINE MIR -46 216 166 404 284 9 9 chr1 12545157 12545273 -269648391 - L2 LINE L2 -38 3275 3160 567 170 30 52 chr1 12545554 12545689 -269647975 - MIR SINE MIR -62 200 69 234 192 48 151 chr1 12545701 12545803 -269647861 - L1M4 LINE L1 -3371 2775 2691 2073 122 14 7 chr1 12545803 12546098 -269647566 + AluSx SINE Alu 1 297 -15 234 192 48 151 chr1 12546098 12546141 -269647523 - L1M4 LINE L1 -3455 2691 2645 * 1474 207 71 15 chr1 12546139 12546549 -269647115 - L1M4 LINE L1 -2952 3194 2762 499 110 27 7 chr1 12547344 12547488 -269646176 - L1PA16 LINE L1 0 6166 5985 362 134 45 15 chr1 12547494 12547561 -269646103 + MER21B LTR ERV1 486 554 -309 1102 99 0 94 chr1 12547561 12547649 -269646015 - L1PA16 LINE L1 -188 5978 5916 2163 133 0 0 chr1 12547649 12547949 -269645715 - AluSx SINE Alu -12 300 1 1102 99 0 94 chr1 12547949 12548052 -269645612 - L1PA16 LINE L1 -250 5916 5805 203 205 48 108 chr1 12548177 12548260 -269645404 - MIR3 SINE MIR -11 197 120 204 292 31 15 chr1 12548519 12548584 -269645080 - MIR SINE MIR 0 262 197 2462 230 101 36 chr1 12548624 12549340 -269644324 - MER21B LTR ERV1 -82 781 20 1987 174 9 14 chr1 12549340 12549690 -269643974 - MER7A DNA MER2_type 0 346 1 1695 166 0 48 chr1 12552718 12553031 -269640633 - AluJb SINE Alu -14 298 1 534 302 50 30 chr1 12553330 12553413 -269640251 - MIR SINE MIR -28 234 154 2189 46 0 4 chr1 12553413 12553672 -269639992 - AluY SINE Alu 0 311 54 534 302 50 30 chr1 12553672 12553790 -269639874 - MIR SINE MIR -108 154 29 1910 138 138 0 chr1 12554140 12554436 -269639228 - MER1B DNA MER1_type 0 337 1 332 313 53 60 chr1 12554771 12554936 -269638728 - L2 LINE L2 -376 2938 2773 2173 94 20 0 chr1 12554936 12555233 -269638431 - AluSq SINE Alu -10 303 1 332 313 53 60 chr1 12555233 12555466 -269638198 - L2 LINE L2 -541 2773 2543 2175 88 24 20 chr1 12556090 12556386 -269637278 - AluSx SINE Alu -15 297 1 290 302 147 0 chr1 12556487 12556603 -269637061 - L2 LINE L2 -1 3312 3180 2123 85 0 0 chr1 12556645 12556905 -269636759 - AluSc SINE Alu -4 305 46 2205 107 3 16 chr1 12556923 12557233 -269636431 + AluSg SINE Alu 5 310 0 1059 130 0 0 chr1 12558210 12558379 -269635285 + (TCCC)n Simple_repeat Simple_repeat 1 169 0 2046 129 4 0 chr1 12558379 12558657 -269635007 - AluJb SINE Alu -33 279 1 240 152 0 0 chr1 12609246 12609292 -269584372 - L1MC4 LINE L1 0 8042 7997 529 234 12 42 chr1 12609310 12609477 -269584187 - L1MC4a LINE L1 -479 7329 7168 2267 105 0 0 chr1 12609588 12609883 -269583781 - AluSx SINE Alu -17 295 1 1580 256 43 18 chr1 12609885 12610377 -269583287 - L1MC4 LINE L1 -1034 7008 6505 241 311 235 0 chr1 12611133 12611265 -269582399 + MIR SINE MIR 49 211 -51 818 210 96 18 chr1 12611291 12611510 -269582154 - MIR SINE MIR -4 258 23 700 286 48 52 chr1 12611711 12611894 -269581770 + MIR SINE MIR 2 185 -77 2542 80 0 0 chr1 12611894 12612207 -269581457 - AluSq SINE Alu 0 313 1 700 286 48 52 chr1 12612207 12612275 -269581389 + MIR SINE MIR 185 252 -10 306 106 0 0 chr1 12613194 12613241 -269580423 + (TG)n Simple_repeat Simple_repeat 2 48 0 3853 160 36 70 chr1 12615045 12615374 -269578290 - L1MB5 LINE L1 -9 6165 5827 2333 92 0 7 chr1 12615374 12615679 -269577985 - AluSq SINE Alu -10 303 1 3853 160 36 70 chr1 12615679 12616051 -269577613 - L1MB5 LINE L1 -347 5827 5513 1421 188 24 40 chr1 12616051 12616349 -269577315 - AluJb SINE Alu -19 293 1 3853 160 36 70 chr1 12616349 12616752 -269576912 - L1MB5 LINE L1 -661 5513 5098 186 43 0 0 chr1 12616896 12616919 -269576745 + (A)n Simple_repeat Simple_repeat 1 23 0 235 305 9 0 chr1 12618067 12618140 -269575524 + MIR SINE MIR 76 151 -57 2507 54 0 3 chr1 12618846 12619143 -269574521 - AluY SINE Alu -15 296 1 2773 102 27 0 chr1 12620550 12620960 -269572704 + MER57B LTR ERV1 1 421 -13 198 103 0 0 chr1 12620973 12621002 -269572662 + (TTTTC)n Simple_repeat Simple_repeat 5 33 0 1027 76 29 12 chr1 12621002 12621174 -269572490 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2198 116 10 0 chr1 12621178 12621480 -269572184 - AluSq SINE Alu -8 305 1 302 200 100 0 chr1 12622346 12622406 -269571258 + MIR SINE MIR 123 188 -74 523 217 50 56 chr1 12622779 12622959 -269570705 - L2 LINE L2 -5 3308 3130 1025 277 90 48 chr1 12623004 12623615 -269570049 - L2 LINE L2 -458 2856 2220 216 0 0 0 chr1 12623696 12623720 -269569944 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1549 186 7 7 chr1 12623725 12623999 -269569665 - AluJo SINE Alu -38 274 1 206 250 60 50 chr1 12625637 12625737 -269567927 + L3b LINE CR1 1274 1374 -209 2808 244 73 8 chr1 12625755 12626633 -269567031 + L1MEc LINE L1 36 970 -5426 310 251 240 0 chr1 12626653 12626824 -269566840 + L1MEc LINE L1 878 1089 -5307 341 303 63 6 chr1 12626838 12627013 -269566651 + L1MEc LINE L1 1206 1390 -4825 508 231 39 19 chr1 12627014 12627170 -269566494 + L1MEc LINE L1 1683 1841 -4555 1785 193 81 8 chr1 12627189 12627372 -269566292 + L1MEc LINE L1 1929 2097 -4299 2144 117 6 19 chr1 12627372 12627688 -269565976 + AluSx SINE Alu 1 312 0 1785 193 81 8 chr1 12627688 12628021 -269565643 + L1MEc LINE L1 2097 2483 -3913 3060 59 83 5 chr1 12628030 12628437 -269565227 - MLT2A1 LTR ERVL -5 439 1 17780 62 9 8 chr1 12628462 12630657 -269563007 - HERVL-A1 LTR ERVL -69 5585 3388 705 190 0 8 chr1 12630659 12630780 -269562884 - AluSx SINE Alu -149 163 44 1585 196 0 22 chr1 12630929 12631241 -269562423 - AluSx SINE Alu -7 305 1 1900 122 54 0 chr1 12631289 12631568 -269562096 + AluSq SINE Alu 1 294 -19 28 48 0 0 chr1 12631597 12631639 -269562025 + AT_rich Low_complexity Low_complexity 1 42 0 27375 62 11 7 chr1 12631639 12635029 -269558635 - HERVL-A2 LTR ERVL -2250 3404 1 324 24 0 24 chr1 12635029 12635071 -269558593 - MLT2A2 LTR ERVL 0 453 413 315 0 0 0 chr1 12635072 12635107 -269558557 + (TA)n Simple_repeat Simple_repeat 1 35 0 332 206 54 0 chr1 12635108 12635200 -269558464 + L1MEc LINE L1 3274 3370 -2845 * 1200 237 6 44 chr1 12635194 12635511 -269558153 - L1M4 LINE L1 -6170 372 68 2133 102 3 3 chr1 12635998 12636311 -269557353 - AluSx SINE Alu 0 313 1 261 277 0 0 chr1 12636608 12636673 -269556991 - L2 LINE L2 0 3272 3208 2178 115 10 0 chr1 12636868 12637163 -269556501 + AluSp SINE Alu 1 298 -15 757 125 66 0 chr1 12637165 12637301 -269556363 - L1MA8 LINE L1 -27 6264 6120 1662 168 11 15 chr1 12638001 12638275 -269555389 + AluJb SINE Alu 1 273 -39 360 0 0 0 chr1 12638291 12638331 -269555333 + (CA)n Simple_repeat Simple_repeat 1 40 0 265 284 0 15 chr1 12641935 12642002 -269551662 - MIR SINE MIR -194 68 3 289 266 13 0 chr1 12642153 12642232 -269551432 - L3 LINE CR1 -189 1388 1309 1070 252 26 38 chr1 12642390 12642731 -269550933 - MER102b DNA MER1_type -3 338 2 195 42 0 0 chr1 12645643 12645667 -269547997 + (GA)n Simple_repeat Simple_repeat 2 25 0 1979 133 14 4 chr1 12645712 12645990 -269547674 - AluJb SINE Alu -31 281 1 321 262 87 0 chr1 12646236 12646339 -269547325 - L1M LINE L1 -2428 5380 5269 476 63 16 0 chr1 12646514 12646577 -269547087 - U3 snRNA snRNA -153 64 1 324 268 137 0 chr1 12647789 12647942 -269545722 + L1ME3A LINE L1 1279 1452 -4971 1442 263 60 45 chr1 12647980 12648675 -269544989 + L1ME3A LINE L1 4467 5172 -1769 922 115 0 0 chr1 12648678 12648800 -269544864 + FLAM_C SINE Alu 3 124 -19 300 176 0 44 chr1 12648801 12648892 -269544772 + GA-rich Low_complexity Low_complexity 2 88 0 1370 279 37 23 chr1 12648909 12649409 -269544255 - MLT1H LTR MaLR 0 549 1 2841 262 46 17 chr1 12649410 12650434 -269543230 + L1ME3A LINE L1 5206 6257 -708 206 125 21 0 chr1 12650489 12650537 -269543127 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 1083 178 102 22 chr1 12650558 12650783 -269542881 + AluJb SINE Alu 25 267 -45 397 326 13 30 chr1 12650815 12651051 -269542613 - AluJo SINE Alu -19 283 52 831 161 0 0 chr1 12651233 12651357 -269542307 - FLAM_C SINE Alu -19 124 1 1899 241 28 79 chr1 12651389 12651587 -269542077 + L1ME3A LINE L1 6284 6491 -474 1777 165 0 0 chr1 12651587 12651866 -269541798 + AluJb SINE Alu 1 279 -33 1899 241 28 79 chr1 12651866 12652385 -269541279 + L1ME3A LINE L1 6491 6964 -1 1619 167 24 24 chr1 12653545 12653838 -269539826 + AluJb SINE Alu 1 293 -19 221 281 16 16 chr1 12654680 12654744 -269538920 + L2 LINE L2 2564 2627 -687 2111 132 3 7 chr1 12655542 12655852 -269537812 - AluSx SINE Alu -1 311 3 22 0 0 0 chr1 12656098 12656120 -269537544 + AT_rich Low_complexity Low_complexity 1 22 0 213 254 127 0 chr1 12656239 12656302 -269537362 + MIR SINE MIR 125 195 -67 2489 143 57 0 chr1 12657024 12657429 -269536235 - MSTA LTR MaLR 0 428 1 1246 169 257 7 chr1 12657429 12657701 -269535963 - MER7A DNA MER2_type -8 338 1 1978 112 14 34 chr1 12659480 12659775 -269533889 - AluSx SINE Alu -23 289 1 359 222 101 0 chr1 12660383 12660482 -269533182 - MIR SINE MIR -117 145 37 343 253 47 47 chr1 12660777 12660927 -269532737 - MIR SINE MIR -54 208 59 2157 123 0 17 chr1 12662922 12663224 -269530440 + AluSx SINE Alu 1 297 -15 312 137 0 0 chr1 12663332 12663383 -269530281 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 2170 106 11 0 chr1 12664381 12664688 -269528976 + AluSq SINE Alu 1 310 0 289 277 35 51 chr1 12664833 12664870 -269528794 - MIR SINE MIR -65 143 107 467 33 16 0 chr1 12664870 12664931 -269528733 + (TTA)n Simple_repeat Simple_repeat 1 62 0 289 277 35 51 chr1 12664931 12665054 -269528610 - MIR SINE MIR -101 107 33 1881 176 20 12 chr1 12665071 12665412 -269528252 - MER2 DNA MER2_type 0 344 1 2193 126 3 0 chr1 12666940 12667241 -269526423 - AluSq SINE Alu -11 302 1 335 275 48 48 chr1 12667902 12668069 -269525595 - MIR SINE MIR -73 189 23 266 294 47 65 chr1 12668107 12668277 -269525387 - MIR SINE MIR -50 212 46 308 299 143 20 chr1 12668952 12669099 -269524565 - MIR3 SINE MIR -6 202 38 258 338 65 14 chr1 12669227 12669366 -269524298 + L2 LINE L2 3122 3267 -5 2346 96 3 3 chr1 12669761 12670064 -269523600 + AluSp SINE Alu 1 303 -10 1706 162 46 0 chr1 12670259 12670543 -269523121 - AluJb SINE Alu -14 298 2 186 71 0 0 chr1 12670908 12670936 -269522728 + (A)n Simple_repeat Simple_repeat 1 28 0 264 30 0 0 chr1 12671546 12671567 -269522097 + (GA)n Simple_repeat Simple_repeat 1 54 0 264 30 0 0 chr1 12671567 12671600 -269522064 + (GA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr1 12671599 12671620 -269522044 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 1386 192 15 23 chr1 12672861 12673127 -269520537 + AluJb SINE Alu 36 299 -13 698 254 143 5 chr1 12673130 12673339 -269520325 - MIR SINE MIR -7 255 18 251 264 73 0 chr1 12673700 12673810 -269519854 - L2 LINE L2 -13 3300 3183 2503 72 3 0 chr1 12674310 12674617 -269519047 - AluSp SINE Alu -5 308 1 1592 144 121 47 chr1 12675811 12676151 -269517513 + MLT1A1 LTR MaLR 1 365 0 606 249 115 103 chr1 12676516 12677237 -269516427 + L2 LINE L2 2417 3200 -113 266 100 100 0 chr1 12677237 12677277 -269516387 - MLT1A2 LTR MaLR -330 44 1 606 249 115 103 chr1 12677277 12677383 -269516281 + L2 LINE L2 3200 3303 -10 201 138 0 0 chr1 12677384 12677413 -269516251 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 322 239 123 68 chr1 12677420 12677583 -269516081 - MIR SINE MIR -90 172 1 2161 135 0 6 chr1 12678243 12678555 -269515109 + AluSx SINE Alu 1 310 -2 2178 127 0 3 chr1 12678576 12678876 -269514788 - AluSq SINE Alu -14 299 1 456 177 199 40 chr1 12679826 12680052 -269513612 - MER33 DNA MER1_type -59 265 4 1971 145 30 10 chr1 12680235 12680538 -269513126 - AluJb SINE Alu -3 309 1 919 232 70 11 chr1 12680844 12681116 -269512548 - L1ME3A LINE L1 -219 6020 5733 796 261 162 29 chr1 12681347 12681488 -269512176 - L1ME3A LINE L1 -4572 1824 1703 2138 119 23 0 chr1 12681488 12681790 -269511874 - AluSx SINE Alu -3 309 1 796 261 162 29 chr1 12681790 12682303 -269511361 - L1ME3A LINE L1 -4693 1703 1083 2276 111 0 7 chr1 12683784 12684090 -269509574 + AluSg SINE Alu 1 304 -6 420 210 34 67 chr1 12684995 12685114 -269508550 + MIR SINE MIR 127 241 -21 201 325 63 32 chr1 12685755 12685881 -269507783 - MIR SINE MIR -60 148 19 1947 138 7 3 chr1 12687492 12687782 -269505882 + AluSx SINE Alu 1 291 -21 197 348 11 11 chr1 12687811 12687903 -269505761 - MIR SINE MIR -121 141 50 1839 198 100 5 chr1 12688086 12688465 -269505199 + MER47B DNA MER2_type 4 418 0 596 266 85 5 chr1 12689501 12689700 -269503964 - MIR SINE MIR -1 261 47 279 284 0 0 chr1 12691489 12691556 -269502108 - MIR3 SINE MIR -11 197 131 192 315 139 18 chr1 12691769 12691934 -269501730 - MIR SINE MIR -77 185 1 198 209 93 0 chr1 12692858 12692901 -269500763 + L2 LINE L2 3225 3271 -1 258 194 0 14 chr1 12693258 12693286 -269500378 + (TTTAA)n Simple_repeat Simple_repeat 1 28 -43 1920 130 0 0 chr1 12693286 12693547 -269500117 + AluSx SINE Alu 1 261 -51 258 194 0 14 chr1 12693547 12693590 -269500074 + (TTTAA)n Simple_repeat Simple_repeat 28 71 0 1058 104 0 0 chr1 12693871 12694005 -269499659 + AluSg SINE Alu 1 134 -176 2294 120 3 0 chr1 12694005 12694314 -269499350 + AluSx SINE Alu 1 310 -2 736 239 6 0 chr1 12696070 12696229 -269497435 + FRAM SINE Alu 1 160 -6 282 245 0 0 chr1 12696770 12696823 -269496841 - MER2 DNA MER2_type -25 320 268 1007 174 6 6 chr1 12696913 12697085 -269496579 - MER2 DNA MER2_type -172 173 2 2479 81 7 0 chr1 12697118 12697425 -269496239 - AluSc SINE Alu 0 309 1 189 0 0 0 chr1 12697597 12697618 -269496046 + (T)n Simple_repeat Simple_repeat 1 21 0 219 129 35 35 chr1 12698242 12698327 -269495337 + (TA)n Simple_repeat Simple_repeat 1 85 0 327 288 12 53 chr1 12699903 12700073 -269493591 - L2 LINE L2 -191 3081 2919 332 234 204 50 chr1 12700073 12700250 -269493414 - MIR SINE MIR -25 237 37 1561 153 29 32 chr1 12701118 12701399 -269492265 + AluJo SINE Alu 1 280 -32 262 271 27 75 chr1 12701404 12701541 -269492123 + MIR SINE MIR 16 149 -62 2568 54 0 0 chr1 12703503 12703797 -269489867 + AluSc SINE Alu 1 294 -15 2213 124 0 0 chr1 12704819 12705118 -269488546 - AluSg SINE Alu -11 299 1 2209 123 0 7 chr1 12706399 12706707 -269486957 + AluJb SINE Alu 1 306 -6 862 174 26 0 chr1 12706967 12707122 -269486542 + Charlie1b DNA MER1_type 122 280 -243 2151 135 3 0 chr1 12708668 12708965 -269484699 + AluSx SINE Alu 1 298 -14 439 218 55 74 chr1 12709033 12709235 -269484429 - HAL1 LINE L1 -6 2501 2304 527 250 28 68 chr1 12709259 12709507 -269484157 - HAL1 LINE L1 -286 2221 1984 611 236 67 45 chr1 12709765 12709943 -269483721 - HAL1 LINE L1 -1584 923 742 463 272 174 53 chr1 12709975 12710354 -269483310 - HAL1 LINE L1 -2082 425 1 296 286 115 36 chr1 12711105 12711297 -269482367 + MIR SINE MIR 47 253 -9 249 367 23 16 chr1 12712839 12712967 -269480697 + MIR SINE MIR 21 149 -59 186 71 0 0 chr1 12713537 12713565 -269480099 + (A)n Simple_repeat Simple_repeat 1 28 0 700 271 6 0 chr1 12717146 12717327 -269476337 - MIR SINE MIR -73 189 8 289 217 87 0 chr1 12720200 12720292 -269473372 - MIR SINE MIR -39 223 124 351 105 0 63 chr1 12720369 12720464 -269473200 + (TA)n Simple_repeat Simple_repeat 1 89 0 759 260 130 25 chr1 12720540 12720855 -269472809 - L1ME4a LINE L1 -289 5832 5485 304 221 80 63 chr1 12720925 12721128 -269472536 - L1ME4a LINE L1 -669 5493 5295 2469 72 3 0 chr1 12721366 12721670 -269471994 + AluSg SINE Alu 1 305 -5 214 316 0 0 chr1 12722595 12722652 -269471012 + (TG)n Simple_repeat Simple_repeat 2 58 0 190 310 11 35 chr1 12724504 12724591 -269469073 - L2 LINE L2 -24 3289 3205 2429 81 0 10 chr1 12724976 12725283 -269468381 + AluSg SINE Alu 1 304 -6 418 288 124 17 chr1 12725896 12726129 -269467535 - MIR SINE MIR -4 258 1 414 214 0 0 chr1 12726248 12726318 -269467346 + AluJ/FLAM SINE Alu 2 71 -241 198 0 0 0 chr1 12726318 12726340 -269467324 + (A)n Simple_repeat Simple_repeat 1 22 0 1031 226 68 16 chr1 12727370 12727618 -269466046 - MIR SINE MIR 0 262 2 24 32 0 0 chr1 12729888 12729919 -269463745 + AT_rich Low_complexity Low_complexity 1 31 0 528 188 10 10 chr1 12730039 12730140 -269463524 - Charlie5 DNA MER1_type -2509 103 3 743 278 95 17 chr1 12730147 12730496 -269463168 + L1ME3A LINE L1 5485 5860 -310 23 0 0 0 chr1 12730826 12730849 -269462815 + AT_rich Low_complexity Low_complexity 1 23 0 2416 64 20 3 chr1 12730854 12731149 -269462515 + AluY SINE Alu 1 300 -11 296 314 66 29 chr1 12732592 12732729 -269460935 - L2 LINE L2 0 3313 3172 433 285 102 55 chr1 12732743 12732797 -269460867 - L2 LINE L2 -552 2762 2712 2329 71 3 32 chr1 12732797 12733105 -269460559 - AluY SINE Alu -12 299 1 433 285 102 55 chr1 12733105 12733306 -269460358 - L2 LINE L2 -602 2712 2495 513 321 64 21 chr1 12734782 12734969 -269458695 - MIR SINE MIR -19 243 49 1414 219 43 12 chr1 12736265 12736594 -269457070 - MLT1A2 LTR MaLR -4 370 32 433 318 0 0 chr1 12736834 12736944 -269456720 + L2 LINE L2 3187 3296 -17 24 0 0 0 chr1 12737829 12737853 -269455811 + AT_rich Low_complexity Low_complexity 1 24 0 677 111 10 0 chr1 12738369 12738468 -269455196 - FLAM_C SINE Alu -11 132 33 1606 140 38 0 chr1 12738470 12738706 -269454958 + AluJb SINE Alu 43 287 -25 333 311 136 80 chr1 12739277 12739666 -269453998 - L2 LINE L2 -14 3258 2848 257 380 86 16 chr1 12739825 12740080 -269453584 - L2 LINE L2 -661 2653 2381 909 127 0 15 chr1 12740997 12741131 -269452533 - FLAM_C SINE Alu -1 132 1 27 49 0 0 chr1 12741790 12741831 -269451833 + AT_rich Low_complexity Low_complexity 1 41 0 299 326 133 6 chr1 12743855 12744036 -269449628 + L3 LINE CR1 1250 1453 -124 191 230 100 80 chr1 12744939 12745039 -269448625 + MIR SINE MIR 82 183 -79 243 343 27 0 chr1 12745372 12745445 -269448219 - MIR SINE MIR -157 105 31 188 224 138 0 chr1 12746035 12746071 -269447593 + MER5B DNA MER1_type 16 46 -132 1922 84 78 35 chr1 12746071 12746355 -269447309 + AluSg SINE Alu 1 296 -14 188 224 138 0 chr1 12746355 12746376 -269447288 + MER5B DNA MER1_type 46 81 -97 25 0 0 0 chr1 12747970 12747995 -269445669 + AT_rich Low_complexity Low_complexity 1 25 0 294 50 0 0 chr1 12748161 12748201 -269445463 + (TG)n Simple_repeat Simple_repeat 1 40 0 955 103 0 0 chr1 12749980 12750096 -269443568 + AluY SINE Alu 1 116 -195 1195 84 12 24 chr1 12750198 12750397 -269443267 + AluSq SINE Alu 118 314 0 777 278 93 4 chr1 12750397 12750656 -269443008 - L2 LINE L2 -1232 2082 1801 932 292 135 15 chr1 12750664 12751065 -269442599 - L2 LINE L2 -1746 1568 1120 1387 167 80 12 chr1 12751758 12752009 -269441655 + AluJo SINE Alu 23 290 -22 359 344 93 49 chr1 12752041 12752448 -269441216 - L1MC4a LINE L1 -1710 6098 5674 263 213 41 127 chr1 12752662 12752906 -269440758 - L1M4 LINE L1 -2183 3963 3741 1895 155 0 34 chr1 12752941 12753263 -269440401 - AluJo SINE Alu -1 311 1 1268 278 100 68 chr1 12753263 12753422 -269440242 - L1M4 LINE L1 -2469 3677 3525 2459 62 0 0 chr1 12753422 12753711 -269439953 - AluY SINE Alu -22 289 1 2455 76 0 13 chr1 12753715 12754019 -269439645 - AluY SINE Alu -11 300 1 1726 161 4 7 chr1 12754019 12754298 -269439366 - AluJo SINE Alu -20 292 14 1268 278 100 68 chr1 12754298 12754311 -269439353 - L1M4 LINE L1 -2623 3523 3512 2088 116 3 20 chr1 12754311 12754613 -269439051 - AluSx SINE Alu -13 299 3 1268 278 100 68 chr1 12754613 12755243 -269438421 - L1M4 LINE L1 -2634 3512 2904 387 0 0 0 chr1 12755243 12755286 -269438378 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2047 100 21 7 chr1 12755287 12755566 -269438098 - AluSx SINE Alu -29 283 1 1268 278 100 68 chr1 12755566 12755660 -269438004 - L1M4 LINE L1 -3242 2904 2814 1847 130 55 3 chr1 12755660 12755953 -269437711 + AluJb SINE Alu 1 308 -4 1268 278 100 68 chr1 12755953 12756009 -269437655 - L1M4 LINE L1 -3332 2814 2761 2290 98 0 7 chr1 12756009 12756306 -269437358 + AluSg SINE Alu 1 295 -15 1268 278 100 68 chr1 12756306 12756338 -269437326 - L1M4 LINE L1 -3385 2761 2678 272 289 29 10 chr1 12757203 12757307 -269436357 - L2 LINE L2 -24 3289 3184 304 313 224 33 chr1 12757367 12757786 -269435878 - L2 LINE L2 -337 2977 2461 1632 175 6 46 chr1 12757786 12758111 -269435553 + AluJb SINE Alu 1 312 0 304 313 224 33 chr1 12758111 12758151 -269435513 - L2 LINE L2 -853 2461 2430 384 304 184 22 chr1 12758155 12758333 -269435331 - L2 LINE L2 -1101 2213 2065 2447 68 0 10 chr1 12758333 12758629 -269435035 + AluY SINE Alu 1 293 -18 384 304 184 22 chr1 12758629 12758815 -269434849 - L2 LINE L2 -1249 2065 1790 2043 184 105 77 chr1 12758842 12759383 -269434281 + MER97a DNA MER1_type? 1 525 -369 2140 132 6 10 chr1 12759383 12759694 -269433970 - AluSq SINE Alu -3 310 1 2043 184 105 77 chr1 12759694 12759734 -269433930 + MER97a DNA MER1_type? 525 562 -332 2222 95 7 20 chr1 12759734 12760030 -269433634 + AluSx SINE Alu 1 292 -20 2043 184 105 77 chr1 12760030 12760114 -269433550 + MER97a DNA MER1_type? 562 686 -208 2349 104 0 0 chr1 12760304 12760612 -269433052 + AluSx SINE Alu 1 308 -4 2496 71 3 0 chr1 12760785 12761079 -269432585 - AluSp SINE Alu -17 296 2 411 234 53 35 chr1 12761493 12761664 -269432000 - HAL1 LINE L1 -110 2397 2224 944 258 70 21 chr1 12761695 12762024 -269431640 + L1ME2 LINE L1 3297 3641 -2505 362 224 43 9 chr1 12762022 12762138 -269431526 + L1ME2 LINE L1 5766 5885 -279 * 2413 83 3 0 chr1 12762302 12762602 -269431062 + AluY SINE Alu 1 301 -10 1342 123 0 0 chr1 12762724 12762931 -269430733 - AluSg/x SINE Alu 0 312 106 354 288 27 0 chr1 12763837 12763948 -269429716 - MLT2E LTR ERVL -495 133 20 491 136 4 27 chr1 12763987 12764230 -269429434 + AluSx SINE Alu 22 302 -7 1704 154 27 27 chr1 12764262 12764561 -269429103 + AluJo SINE Alu 1 299 -13 2349 94 0 0 chr1 12764563 12764888 -269428776 + AluSg SINE Alu 1 325 0 847 239 52 15 chr1 12764892 12765160 -269428504 - MER33 DNA MER1_type -46 278 1 2191 99 0 51 chr1 12766372 12766685 -269426979 + AluSg SINE Alu 2 298 -12 312 321 79 0 chr1 12767386 12767526 -269426138 + L2 LINE L2 1663 1813 -1501 2321 105 6 19 chr1 12767560 12767874 -269425790 - AluSx SINE Alu -2 310 1 315 164 164 0 chr1 12767913 12767980 -269425684 - L1MC4a LINE L1 -1920 5888 5811 486 98 0 12 chr1 12767985 12768067 -269425597 - HY3 scRNA scRNA 0 101 21 1109 257 115 35 chr1 12768071 12768538 -269425126 - L1MC4a LINE L1 -1971 5837 5328 2201 111 3 10 chr1 12768538 12768844 -269424820 - AluSx SINE Alu -8 304 1 1109 257 115 35 chr1 12768844 12768863 -269424801 - L1MC4a LINE L1 -2480 5328 5312 21 36 0 0 chr1 12768923 12768951 -269424713 + AT_rich Low_complexity Low_complexity 1 28 0 391 264 62 115 chr1 12769194 12769444 -269424220 + L2 LINE L2 1526 1757 -1557 2189 125 3 3 chr1 12769444 12769756 -269423908 - AluSx SINE Alu 0 312 1 391 264 62 115 chr1 12769756 12769827 -269423837 + L2 LINE L2 1757 1830 -1484 390 288 14 14 chr1 12769827 12769973 -269423691 - L1MEc LINE L1 -3526 2689 2544 2093 152 40 45 chr1 12769990 12770538 -269423126 - MLT2A2 LTR ERVL 0 554 2 1845 174 0 0 chr1 12770538 12770819 -269422845 - AluJb SINE Alu -31 281 1 807 235 121 18 chr1 12770819 12771278 -269422386 - L1MEc LINE L1 -3657 2558 2100 786 237 5 11 chr1 12771277 12771463 -269422201 - L1MC1 LINE L1 0 6333 6149 * 2136 273 78 22 chr1 12771470 12771742 -269421922 - L1MEc LINE L1 -4273 2123 1868 2453 100 0 0 chr1 12771742 12772051 -269421613 - AluSx SINE Alu -3 309 1 2136 273 78 22 chr1 12772051 12772142 -269421522 - L1MEc LINE L1 -4528 1868 1784 2612 63 0 0 chr1 12772142 12772444 -269421220 - AluY SINE Alu -9 302 1 2136 273 78 22 chr1 12772444 12772480 -269421184 - L1MEc LINE L1 -4612 1784 1751 234 0 0 0 chr1 12772480 12772506 -269421158 + (TG)n Simple_repeat Simple_repeat 2 27 0 1927 149 0 4 chr1 12772508 12772789 -269420875 - AluJb SINE Alu -32 280 1 2136 273 78 22 chr1 12772789 12773442 -269420222 - L1MEc LINE L1 -4645 1751 1006 675 145 111 8 chr1 12773442 12773559 -269420105 + FLAM_C SINE Alu 1 129 -14 611 231 60 42 chr1 12773587 12773944 -269419720 - L1MEc LINE L1 -4890 931 571 619 374 20 6 chr1 12774034 12774376 -269419288 - L1MEc LINE L1 -6015 381 35 2102 254 152 21 chr1 12774376 12774536 -269419128 + L2 LINE L2 1820 1958 -1356 2360 102 0 0 chr1 12774536 12774839 -269418825 - AluY SINE Alu -8 303 1 2102 254 152 21 chr1 12774839 12775422 -269418242 + L2 LINE L2 1958 2660 -654 227 308 22 0 chr1 12775470 12775561 -269418103 - LTR33 LTR ERVL -40 481 389 1112 251 30 8 chr1 12775599 12775866 -269417798 - LTR33 LTR ERVL -242 279 7 283 289 67 40 chr1 12775970 12776119 -269417545 + MLT1J2 LTR MaLR 272 424 -26 279 276 106 57 chr1 12776142 12776252 -269417412 + MIR SINE MIR 134 253 -9 1738 148 36 18 chr1 12776252 12776556 -269417108 - AluJb SINE Alu 0 309 1 279 276 106 57 chr1 12776556 12776567 -269417097 + MIR SINE MIR 253 262 0 306 0 0 0 chr1 12776675 12776709 -269416955 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 217 140 25 chr1 12776815 12776972 -269416692 + MLT1H1 LTR MaLR 126 300 -249 475 201 113 96 chr1 12777054 12777238 -269416426 + MLT1H1 LTR MaLR 302 492 -63 1718 162 36 16 chr1 12777238 12777541 -269416123 - AluJo SINE Alu -1 311 3 475 201 113 96 chr1 12777541 12777585 -269416079 + MLT1H1 LTR MaLR 492 534 -21 500 267 47 17 chr1 12778387 12778559 -269415105 + MIR SINE MIR 16 192 -70 394 256 51 8 chr1 12778771 12778888 -269414776 - MIR SINE MIR -117 145 24 433 309 45 113 chr1 12779679 12780061 -269413603 + L2 LINE L2 2914 3269 -3 426 284 50 28 chr1 12780064 12780205 -269413459 + L2 LINE L2 3129 3272 0 1672 183 29 13 chr1 12780837 12781143 -269412521 + AluJo SINE Alu 1 311 -1 361 0 41 0 chr1 12781146 12781195 -269412469 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 639 315 56 80 chr1 12781759 12781840 -269411824 + L1ME4a LINE L1 5396 5477 -644 1203 185 101 47 chr1 12781840 12782116 -269411548 - AluJo SINE Alu -19 293 3 639 315 56 80 chr1 12782116 12782548 -269411116 + L1ME4a LINE L1 5477 5897 -224 248 222 0 69 chr1 12782897 12782969 -269410695 - L2 LINE L2 -1 3312 3246 26 0 0 0 chr1 12783024 12783050 -269410614 + AT_rich Low_complexity Low_complexity 1 26 0 2245 114 3 0 chr1 12783055 12783363 -269410301 + AluSq SINE Alu 1 309 -4 858 164 48 36 chr1 12783373 12783538 -269410126 - AluSg/x SINE Alu -12 298 132 1751 110 0 9 chr1 12783538 12783799 -269409865 - AluSc SINE Alu 0 309 59 207 0 0 0 chr1 12833995 12834018 -269359646 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 561 192 0 0 chr1 12834319 12834858 -269358806 + (TG)n Simple_repeat Simple_repeat 1 539 0 301 291 112 8 chr1 12835638 12835772 -269357892 - MIR SINE MIR -79 183 36 217 305 76 23 chr1 12835964 12836095 -269357569 - L2 LINE L2 -62 3251 3114 568 246 0 16 chr1 12836134 12836260 -269357404 - MIR SINE MIR -114 148 25 248 238 50 12 chr1 12836520 12836600 -269357064 + L1ME4a LINE L1 5842 5924 -197 2170 123 0 3 chr1 12836604 12836896 -269356768 - AluJb SINE Alu -11 301 11 778 146 0 0 chr1 12837059 12837182 -269356482 + FRAM SINE Alu 37 159 -17 264 77 0 0 chr1 12837186 12837225 -269356439 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 576 273 126 27 chr1 12837730 12837972 -269355692 - MIR SINE MIR -1 261 1 237 308 140 9 chr1 12837997 12838104 -269355560 + L2 LINE L2 3128 3248 -24 307 272 62 12 chr1 12838717 12838798 -269354866 + MIR SINE MIR 8 92 -170 2372 93 0 3 chr1 12838839 12839149 -269354515 - AluSc SINE Alu 0 309 1 413 302 149 50 chr1 12839929 12840147 -269353517 + L2 LINE L2 2466 2661 -611 2295 65 41 24 chr1 12840147 12840441 -269353223 - AluY SINE Alu -12 299 1 413 302 149 50 chr1 12840441 12840747 -269352917 + L2 LINE L2 2661 3039 -233 3008 138 53 0 chr1 12840755 12841241 -269352423 - MER41E LTR ERV1 0 512 1 487 205 105 54 chr1 12841327 12841566 -269352098 - MER41E-int LTR ERV1 0 6676 6426 266 120 120 0 chr1 12841566 12841616 -269352048 - MADE1 DNA Mariner 0 80 25 648 299 26 11 chr1 12841623 12841891 -269351773 - MER41E-int LTR ERV1 -247 6429 6158 699 320 59 37 chr1 12841922 12842699 -269350965 - LTR43-int LTR ERV1 -3195 3896 2708 2146 163 40 36 chr1 12842926 12843398 -269350266 + LTR22B LTR ERVK 1 474 -18 561 293 74 30 chr1 12843508 12843901 -269349763 - LTR43-int LTR ERV1 -1784 3014 2605 423 292 7 7 chr1 12844047 12844184 -269349480 - LTR43-int LTR ERV1 -4028 2648 2512 * 525 306 40 34 chr1 12844183 12844429 -269349235 - LTR43-int LTR ERV1 -4012 942 694 2068 150 7 7 chr1 12845177 12845484 -269348180 + AluJb SINE Alu 1 307 -5 3204 136 18 10 chr1 12845745 12846253 -269347411 - MER41E LTR ERV1 0 512 1 949 117 28 16 chr1 12846314 12846567 -269347097 + CT-rich Low_complexity Low_complexity 1 257 0 2202 130 0 0 chr1 12846567 12846867 -269346797 - AluSx SINE Alu -12 300 1 217 213 29 52 chr1 12846956 12847092 -269346572 + (CCCTG)n Simple_repeat Simple_repeat 1 133 0 254 289 139 36 chr1 12847092 12847258 -269346406 + L2 LINE L2 3075 3257 -56 237 222 0 0 chr1 12847278 12847341 -269346323 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 326 282 141 81 chr1 12847523 12847736 -269345928 - L2 LINE L2 -84 3188 2989 1296 183 88 45 chr1 12847736 12847964 -269345700 - MER96B DNA MER1_type -1 416 162 2008 125 0 34 chr1 12847964 12848129 -269345535 - AluJo SINE Alu -26 286 134 1965 162 3 0 chr1 12848129 12848426 -269345238 - AluJb SINE Alu -14 298 1 2008 125 0 34 chr1 12848426 12848556 -269345108 - AluJo SINE Alu -178 134 1 1296 183 88 45 chr1 12848556 12848725 -269344939 - MER96B DNA MER1_type -255 162 2 326 282 141 81 chr1 12848725 12848809 -269344855 - L2 LINE L2 -283 2989 2873 497 208 110 87 chr1 12848853 12848960 -269344704 + MER5B DNA MER1_type 1 115 -63 2395 75 0 0 chr1 12848960 12849238 -269344426 - AluSg SINE Alu -20 290 13 497 208 110 87 chr1 12849238 12849303 -269344361 + MER5B DNA MER1_type 115 177 -1 715 253 18 6 chr1 12849430 12849596 -269344068 - MER5B DNA MER1_type -10 168 1 260 242 29 117 chr1 12850296 12850536 -269343128 + L1ME1 LINE L1 5701 5919 -247 217 159 23 23 chr1 12851052 12851096 -269342568 + MIR SINE MIR 79 122 -86 1774 181 31 17 chr1 12851546 12851900 -269341764 - MLT1A1 LTR MaLR -2 363 5 2165 106 36 0 chr1 12852665 12852966 -269340698 - AluSx SINE Alu 0 312 1 872 174 0 28 chr1 12853371 12853515 -269340149 - AluJb SINE Alu -47 265 126 2491 68 0 10 chr1 12853522 12853833 -269339831 - AluY SINE Alu -3 308 1 249 219 193 35 chr1 12854081 12854195 -269339469 + MIR SINE MIR 81 212 -50 2319 99 0 3 chr1 12855825 12856117 -269337547 - AluSg SINE Alu -14 296 6 2073 227 84 49 chr1 12856521 12857094 -269336570 - MLT1E LTR MaLR 0 593 1 234 143 71 0 chr1 12857348 12857390 -269336274 - LTR50 LTR ERVL 0 795 751 2986 312 47 7 chr1 12857528 12858593 -269335071 + HERVL40 LTR ERVL 1985 3101 -2663 189 0 0 0 chr1 12858593 12858614 -269335050 + (CCTG)n Simple_repeat Simple_repeat 1 21 0 2986 312 47 7 chr1 12858614 12858691 -269334973 + HERVL40 LTR ERVL 3101 3173 -2591 269 261 14 109 chr1 12858739 12858817 -269334847 + HERVL40 LTR ERVL 2585 2646 -391 1667 188 0 58 chr1 12858817 12859147 -269334517 - AluJb SINE Alu 0 312 2 269 261 14 109 chr1 12859147 12859206 -269334458 + HERVL40 LTR ERVL 2646 2709 -328 459 248 26 0 chr1 12859438 12859555 -269334109 + HERVL40 LTR ERVL 2783 2902 -135 841 193 32 27 chr1 12859568 12859755 -269333909 + HERVL40 LTR ERVL 5343 5530 0 813 229 28 0 chr1 12859759 12859938 -269333726 + LTR40a LTR ERVL 5 188 -331 4838 111 3 1 chr1 12859945 12860695 -269332969 - L1P LINE L1 -880 5266 4516 6121 87 8 13 chr1 12860695 12861546 -269332118 + L1PA8 LINE L1 5323 6172 0 1036 241 53 8 chr1 12861565 12861830 -269331834 + LTR40b LTR ERVL 153 429 -33 269 172 0 47 chr1 12861855 12861919 -269331745 + LTR40b LTR ERVL 402 462 0 414 305 108 65 chr1 12861920 12861958 -269331706 + LTR41 LTR ERVL 75 110 -663 2375 85 0 13 chr1 12861958 12862264 -269331400 - AluY SINE Alu -9 302 1 414 305 108 65 chr1 12862264 12862576 -269331088 + LTR41 LTR ERVL 110 440 -333 3038 303 43 22 chr1 12862693 12863896 -269329768 - ERVL LTR ERVL -2941 2823 1595 1772 176 10 21 chr1 12863911 12864201 -269329463 - AluJo SINE Alu -13 299 13 3379 90 2 5 chr1 12864326 12864771 -269328893 - MLT2A1 LTR ERVL 0 444 1 2318 112 0 3 chr1 12864863 12865176 -269328488 - AluSq SINE Alu -1 312 1 1917 176 13 3 chr1 12865440 12865747 -269327917 + AluJb SINE Alu 1 310 -2 970 238 42 45 chr1 12865800 12865868 -269327796 - MLT1F1 LTR MaLR 0 567 500 2615 41 3 28 chr1 12865868 12866187 -269327477 + AluY SINE Alu 1 311 0 970 238 42 45 chr1 12866187 12866404 -269327260 - MLT1F1 LTR MaLR -67 500 283 2610 112 18 0 chr1 12866572 12866955 -269326709 + L1PA15 LINE L1 5774 6163 -2 242 107 143 0 chr1 12867301 12867357 -269326307 - MLT1F1 LTR MaLR -328 239 176 228 250 0 16 chr1 12867418 12867482 -269326182 - MLT1F1 LTR MaLR -395 172 110 1296 139 6 4 chr1 12867482 12867713 -269325951 - L1M4 LINE L1 -361 5819 5579 1951 121 24 34 chr1 12867722 12868020 -269325644 - AluSx SINE Alu -17 295 1 194 211 0 0 chr1 12868162 12868200 -269325464 + L2 LINE L2 2707 2744 -570 1658 116 162 12 chr1 12868206 12868465 -269325199 + AluSg1 SINE Alu 1 298 -11 878 201 66 108 chr1 12868758 12869333 -269324331 - MER34B LTR ERV1 -28 514 1 391 221 13 0 chr1 12869400 12869477 -269324187 - MIR SINE MIR -153 109 32 305 348 0 0 chr1 12869705 12869794 -269323870 + MIR SINE MIR 56 144 -118 1888 184 7 0 chr1 12870006 12870316 -269323348 - AluJb SINE Alu 0 312 1 203 309 0 62 chr1 12870322 12870403 -269323261 - L2 LINE L2 -2 3270 3195 7655 26 3 0 chr1 12870498 12871824 -269321840 + L1PA4 LINE L1 4820 6150 -5 267 300 92 8 chr1 12872005 12872125 -269321539 - L2 LINE L2 -7 3265 3136 369 240 75 20 chr1 12872310 12872456 -269321208 - L2 LINE L2 -421 2893 2740 930 142 0 0 chr1 12872588 12872715 -269320949 - FLAM_C SINE Alu -6 127 1 377 316 59 21 chr1 12872949 12873136 -269320528 - MIR SINE MIR -46 216 23 187 189 27 0 chr1 12873246 12873283 -269320381 + L2 LINE L2 3235 3272 0 1851 189 46 8 chr1 12873535 12873906 -269319758 - MSTB1 LTR MaLR 0 432 48 836 214 0 0 chr1 12874026 12874171 -269319493 + AluJb SINE Alu 148 292 -20 1989 259 31 22 chr1 12874221 12874869 -269318795 + L1ME4a LINE L1 997 1650 -4892 238 244 122 0 chr1 12874957 12875039 -269318625 + LTR10B LTR ERV1 194 285 -262 1215 204 40 25 chr1 12875102 12875377 -269318287 + LTR10B LTR ERV1 269 547 0 532 175 0 10 chr1 12875402 12875505 -269318159 + L1ME4a LINE L1 4026 4127 -2517 * 1791 142 25 6 chr1 12875503 12875821 -269317843 + L1ME4a LINE L1 5961 6284 -398 1589 130 13 74 chr1 12875825 12876124 -269317540 - MLT2B3 LTR ERVL 0 554 274 1535 213 10 3 chr1 12876237 12876537 -269317127 + AluSx SINE Alu 7 308 -4 1951 166 0 3 chr1 12876559 12876861 -269316803 + AluJb SINE Alu 9 309 -3 508 271 94 30 chr1 12877100 12877303 -269316361 - MIR SINE MIR -26 236 21 432 196 30 68 chr1 12877364 12877497 -269316167 + L1ME4a LINE L1 6455 6582 -37 2481 79 0 22 chr1 12877898 12878213 -269315451 - AluY SINE Alu -3 308 1 290 287 0 26 chr1 12878619 12878734 -269314930 + (TGAA)n Simple_repeat Simple_repeat 1 112 0 216 222 7 37 chr1 12878744 12878879 -269314785 + (TGGA)n Simple_repeat Simple_repeat 4 134 0 1746 164 3 17 chr1 12880491 12880790 -269312874 + AluJo SINE Alu 1 295 -17 247 341 144 0 chr1 12881500 12881667 -269311997 - MIR SINE MIR -12 250 60 2149 107 10 0 chr1 12881845 12882144 -269311520 + AluSx SINE Alu 1 302 -10 1723 146 3 33 chr1 12882999 12883300 -269310364 + AluJb SINE Alu 1 292 -20 763 325 44 14 chr1 12883469 12883764 -269309900 + L1ME2 LINE L1 5850 6153 -11 1502 91 10 0 chr1 12883764 12883993 -269309671 - AluSg/x SINE Alu 0 313 83 692 222 0 26 chr1 12984110 12984263 -269209401 - AluSc SINE Alu -17 292 144 1407 200 3 52 chr1 12984338 12984526 -269209138 - AluJb SINE Alu -13 299 130 1831 153 0 39 chr1 12984526 12984833 -269208831 + AluSx SINE Alu 1 295 -17 1407 200 3 52 chr1 12984833 12984954 -269208710 - AluJb SINE Alu -182 130 5 1506 193 10 24 chr1 12985529 12985825 -269207839 + AluSx SINE Alu 5 296 -16 2758 206 59 5 chr1 12986195 12986767 -269206897 + LTR26 LTR ERV1 1 603 0 2799 209 60 2 chr1 12987036 12987606 -269206058 + LTR26 LTR ERV1 1 603 0 495 230 8 8 chr1 12987744 12987870 -269205794 + MER65A LTR ERV1 215 340 -105 994 187 160 17 chr1 12988090 12988384 -269205280 + LTR44 LTR ERV1 1 336 -183 346 117 17 17 chr1 12988462 12988522 -269205142 + Alu SINE Alu 247 306 -2 1910 157 3 10 chr1 12988522 12988827 -269204837 + AluSc SINE Alu 1 303 -6 1942 149 3 3 chr1 12989201 12989519 -269204145 - AluSc SINE Alu 0 318 1 230 190 17 0 chr1 12989573 12989631 -269204033 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 2063 134 3 0 chr1 12989633 12989924 -269203740 - AluSq SINE Alu -21 292 1 1788 155 7 17 chr1 12990947 12991084 -269202580 + AluSx SINE Alu 1 138 -174 2168 84 0 0 chr1 12991084 12991357 -269202307 + AluY SINE Alu 35 307 -4 1788 155 7 17 chr1 12991357 12991515 -269202149 + AluSx SINE Alu 138 293 -19 1999 136 13 3 chr1 12994784 12995086 -269198578 + AluSg SINE Alu 1 305 -5 1356 214 0 37 chr1 12995095 12995439 -269198225 + AluJb SINE Alu 1 333 0 694 195 8 0 chr1 12995520 12995643 -269198021 + FLAM_C SINE Alu 2 125 -18 1428 194 14 11 chr1 12995727 12996010 -269197654 + AluSx SINE Alu 5 288 -24 12817 100 15 8 chr1 12996369 12999096 -269194568 + L1PA7 LINE L1 3384 6134 -20 526 326 11 11 chr1 12999211 12999401 -269194263 + MIR SINE MIR 59 248 -14 2222 109 0 0 chr1 12999401 12999684 -269193980 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr1 12999684 12999707 -269193957 + (TA)n Simple_repeat Simple_repeat 2 24 0 419 295 8 16 chr1 13000500 13000629 -269193035 + LTR67 LTR ERVL 428 555 -2 237 108 0 0 chr1 13000725 13000762 -269192902 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 849 85 115 0 chr1 13001244 13001374 -269192290 - L1PA13 LINE L1 -376 5787 5643 2258 123 57 8 chr1 13001376 13001742 -269191922 + L1PA13 LINE L1 5778 6161 -2 1014 163 6 0 chr1 13001922 13002088 -269191576 - MSTB LTR MaLR -259 167 1 1577 208 30 14 chr1 13002282 13002647 -269191017 - MLT1A2 LTR MaLR -2 372 2 361 274 82 64 chr1 13003311 13003716 -269189948 + L2 LINE L2 2299 2710 -604 21 36 0 0 chr1 13004423 13004451 -269189213 + AT_rich Low_complexity Low_complexity 1 28 0 306 224 15 0 chr1 13005216 13005283 -269188381 - MER103 DNA DNA -77 89 22 2290 57 57 0 chr1 13006448 13006729 -269186935 + AluY SINE Alu 1 297 -14 239 246 0 18 chr1 13007269 13007326 -269186338 + CT-rich Low_complexity Low_complexity 2 57 0 410 266 112 89 chr1 13007457 13007851 -269185813 + MLT1J LTR MaLR 25 427 -84 2162 114 3 3 chr1 13009799 13010096 -269183568 + AluSg1 SINE Alu 1 297 -12 434 263 35 29 chr1 13010177 13010348 -269183316 - MIR SINE MIR -13 249 78 350 89 0 0 chr1 13010477 13010525 -269183139 - MLT2D LTR ERVL -6 391 349 317 241 0 19 chr1 13010526 13010634 -269183030 + (TATATG)n Simple_repeat Simple_repeat 1 106 0 253 215 0 15 chr1 13010635 13010669 -269182995 + (TG)n Simple_repeat Simple_repeat 2 36 -29 1235 181 97 28 chr1 13010669 13010989 -269182675 - MER2 DNA MER2_type -1 343 2 253 215 0 15 chr1 13010989 13011019 -269182645 + (TG)n Simple_repeat Simple_repeat 36 65 0 1306 109 0 0 chr1 13011049 13011223 -269182441 + AluSq SINE Alu 130 303 -10 1031 212 82 20 chr1 13011484 13011729 -269181935 - MLT2D LTR ERVL -143 271 12 6431 34 1 1 chr1 13011829 13013095 -269180569 + L1PA4 LINE L1 4750 6015 -140 3632 80 2 25 chr1 13013789 13014300 -269179364 + L1PA4 LINE L1 5657 6155 0 1864 116 116 0 chr1 13016213 13016506 -269177158 + MER41C LTR ERV1 228 554 0 7525 113 35 15 chr1 13016594 13017732 -269175932 + MER41C-int LTR ERV1 4 1164 -6592 236 98 0 24 chr1 13018505 13018546 -269175118 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 314 299 30 8 chr1 13019108 13019242 -269174422 - MER5A DNA MER1_type -38 151 15 249 288 15 0 chr1 13019932 13019998 -269173666 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 304 176 56 56 chr1 13020330 13020438 -269173226 + MLT1K LTR MaLR 395 502 -86 1083 161 0 0 chr1 13020477 13020645 -269173019 - AluSg/x SINE Alu 0 310 143 488 232 1 0 chr1 13020748 13020872 -269172792 - L1M4 LINE L1 -448 5726 5602 246 263 188 23 chr1 13021370 13021503 -269172161 - MLT1H1 LTR MaLR -335 220 66 1437 97 5 0 chr1 13021904 13022090 -269171574 + AluSx SINE Alu 1 187 -125 2234 105 0 0 chr1 13022481 13022775 -269170889 - AluSx SINE Alu -18 294 1 2149 151 30 30 chr1 13024314 13024678 -269168986 - THE1B LTR MaLR 0 364 1 2264 99 10 0 chr1 13025212 13025514 -269168150 - AluSx SINE Alu -7 305 1 200 210 109 80 chr1 13026141 13026279 -269167385 + L2 LINE L2 2487 2628 -686 2473 182 23 49 chr1 13026734 13027262 -269166402 - MLT2B2 LTR ERVL -1 514 1 1005 126 0 0 chr1 13027460 13027595 -269166069 + AluSq/x SINE Alu 1 135 -178 2015 142 0 0 chr1 13027595 13027916 -269165748 + AluSx SINE Alu 1 321 0 4116 134 17 36 chr1 13027916 13028609 -269165055 + L1PA16 LINE L1 5486 6165 -1 280 275 50 50 chr1 13029016 13029176 -269164488 - MER113 DNA MER1_type? -49 472 313 268 86 0 0 chr1 13029286 13029321 -269164343 + Alu SINE Alu 1 35 -264 390 268 100 45 chr1 13029810 13030015 -269163649 - MLT1J2 LTR MaLR 0 409 238 940 270 72 13 chr1 13030060 13030364 -269163300 - L1MC4a LINE L1 0 7808 7487 627 177 0 0 chr1 13030387 13030483 -269163181 - FLAM_A SINE Alu -26 116 21 2443 96 0 0 chr1 13030660 13030972 -269162692 - AluSq SINE Alu -1 312 1 1327 159 12 84 chr1 13030972 13031293 -269162371 - L1MB1 LINE L1 -14 6154 5857 7223 225 22 11 chr1 13031393 13033678 -269159986 + L1MB2 LINE L1 1457 3748 -2398 3799 178 12 0 chr1 13033800 13034481 -269159183 + L1MB2 LINE L1 5476 6164 -7 320 262 56 48 chr1 13034483 13034609 -269159055 + L1M4 LINE L1 77 203 -6656 977 243 49 52 chr1 13034829 13034899 -269158765 + L1M4 LINE L1 3437 3506 -3451 1492 106 0 5 chr1 13034899 13035107 -269158557 - AluSq SINE Alu -106 207 1 977 243 49 52 chr1 13035107 13035423 -269158241 + L1M4 LINE L1 3506 3822 -3135 1114 231 15 68 chr1 13035665 13035742 -269157922 + MER49 LTR ERV1 555 634 -289 1683 130 17 47 chr1 13035742 13035881 -269157783 + AluSx SINE Alu 7 149 -163 2277 71 3 0 chr1 13035881 13036177 -269157487 + AluY SINE Alu 1 297 -14 1683 130 17 47 chr1 13036177 13036337 -269157327 + AluSx SINE Alu 149 297 -15 1114 231 15 68 chr1 13036337 13036583 -269157081 + MER49 LTR ERV1 634 861 -62 767 145 38 23 chr1 13036598 13036729 -269156935 - FLAM_C SINE Alu 0 133 1 1232 101 6 6 chr1 13036743 13036921 -269156743 - AluSx SINE Alu -14 298 121 1966 134 0 3 chr1 13037077 13037376 -269156288 - AluSx SINE Alu -14 298 1 1014 79 0 29 chr1 13037376 13037515 -269156149 - AluSx SINE Alu -178 135 1 2498 55 0 10 chr1 13037851 13038163 -269155501 - AluY SINE Alu -2 309 1 189 74 0 0 chr1 13038885 13038912 -269154752 + (TAA)n Simple_repeat Simple_repeat 3 29 0 277 289 49 88 chr1 13039170 13039374 -269154290 + Charlie8 DNA MER1_type 9 204 -2213 2714 108 12 5 chr1 13040559 13040967 -269152697 + L1PB2 LINE L1 5741 6151 0 1264 304 121 55 chr1 13040968 13041886 -269151778 + L2 LINE L2 1697 2675 -639 1626 131 88 0 chr1 13042286 13042571 -269151093 - AluSx SINE Alu 0 308 1 433 264 37 68 chr1 13042757 13042809 -269150855 - MIR SINE MIR -4 258 206 1924 141 0 20 chr1 13042809 13043114 -269150550 - AluSx SINE Alu -8 304 6 433 264 37 68 chr1 13043114 13043224 -269150440 - MIR SINE MIR -56 206 101 559 274 6 12 chr1 13043431 13043595 -269150069 + LTR33 LTR ERVL 4 166 -355 1167 233 16 46 chr1 13043690 13044063 -269149601 + MER20B DNA MER1_type 417 778 -5 1079 224 75 25 chr1 13044066 13044387 -269149277 - MER58B DNA MER1_type -2 339 3 328 322 163 30 chr1 13045348 13045618 -269148046 + L2 LINE L2 3008 3313 0 243 229 66 0 chr1 13047179 13047240 -269146424 - LTR33 LTR ERVL -126 395 331 378 286 153 51 chr1 13047291 13047487 -269146177 - LTR33 LTR ERVL -305 216 1 1948 66 4 26 chr1 13047784 13048057 -269145607 + AluY SINE Alu 44 310 -1 778 205 7 0 chr1 13048436 13048587 -269145077 - MLT1B LTR MaLR -105 285 134 1101 255 19 11 chr1 13048588 13048912 -269144752 - MER93b LTR ERV1 0 373 61 464 180 60 0 chr1 13049021 13049121 -269144543 - MLT1B LTR MaLR -256 134 29 2520 119 11 16 chr1 13049126 13049503 -269144161 + THE1C LTR MaLR 1 375 0 498 278 46 29 chr1 13049695 13049868 -269143796 + MER5B DNA MER1_type 1 176 -2 402 247 17 107 chr1 13049880 13050058 -269143606 + MER5B DNA MER1_type 17 178 0 542 222 44 56 chr1 13050152 13050332 -269143332 + MER5B DNA MER1_type 1 178 0 477 157 0 0 chr1 13050597 13050667 -269142997 - AluSp SINE Alu -107 206 137 2127 110 0 13 chr1 13050804 13051114 -269142550 + AluSc SINE Alu 3 308 -1 858 111 0 0 chr1 13051140 13051257 -269142407 + AluSg SINE Alu 1 117 -193 180 111 0 0 chr1 13051400 13051427 -269142237 + (A)n Simple_repeat Simple_repeat 1 27 0 1729 94 45 0 chr1 13051524 13051769 -269141895 + AluSx SINE Alu 1 256 -56 424 251 86 74 chr1 13051835 13052010 -269141654 - L1MEd LINE L1 -5712 407 231 2345 75 3 0 chr1 13052098 13052404 -269141260 - AluY SINE Alu -3 308 2 310 89 0 0 chr1 13052506 13052551 -269141113 + HERV9 LTR ERV1 1005 1049 -7577 * 1960 105 7 14 chr1 13052538 13052832 -269140832 + HERV9 LTR ERV1 1275 4405 -3380 952 141 0 12 chr1 13052805 13052968 -269140696 + HERV9 LTR ERV1 1580 1740 -5156 * 648 49 0 0 chr1 13052966 13053047 -269140617 + HERV9 LTR ERV1 7626 7706 -693 * 2239 63 0 0 chr1 13053147 13053500 -269140164 - L1PA8A LINE L1 -596 5535 5183 2606 118 96 0 chr1 13053506 13053914 -269139750 - MER41C LTR ERV1 -107 447 1 18891 103 8 9 chr1 13053914 13056531 -269137133 - MER41C-int LTR ERV1 0 7756 5141 1636 112 0 9 chr1 13056531 13056763 -269136901 - MER41C-int LTR ERV1 -3133 4623 4394 * 2705 89 84 0 chr1 13056758 13057139 -269136525 - PRIMA41-int LTR ERV1 -4701 3055 2643 18206 88 2 0 chr1 13057239 13059634 -269134030 - L1P LINE L1 -3746 2400 1 6094 100 9 56 chr1 13059657 13061172 -269132492 - SVA Other Other -520 1385 433 270 268 21 0 chr1 13061360 13061457 -269132207 + (TA)n Simple_repeat Simple_repeat 2 100 0 2100 98 3 3 chr1 13061527 13061822 -269131842 + AluY SINE Alu 2 296 -15 743 131 0 0 chr1 13061827 13061934 -269131730 + U6 snRNA snRNA 1 107 0 4786 92 8 3 chr1 13061934 13062597 -269131067 + L1PA7 LINE L1 5483 6148 -6 2532 212 117 9 chr1 13062746 13063396 -269130268 - L1MC1 LINE L1 -13 6320 5601 272 184 161 11 chr1 13063441 13063528 -269130136 + L2 LINE L2 3163 3262 -10 1069 262 61 22 chr1 13064336 13064695 -269128969 - MER49 LTR ERV1 -1 922 550 533 161 0 113 chr1 13064693 13064785 -269128879 + MER4E LTR ERV1 38 139 -640 * 1932 133 3 0 chr1 13064785 13065071 -269128593 + AluSp SINE Alu 1 287 -26 266 65 0 22 chr1 13065074 13065120 -269128544 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 533 161 0 113 chr1 13065120 13065147 -269128517 + MER4E LTR ERV1 141 147 -632 22 35 0 0 chr1 13067628 13067657 -269126007 + AT_rich Low_complexity Low_complexity 1 29 0 580 228 0 0 chr1 13067665 13067779 -269125885 - FLAM_C SINE Alu -27 116 3 261 0 0 0 chr1 13068186 13068215 -269125449 + (A)n Simple_repeat Simple_repeat 1 29 0 1259 169 12 4 chr1 13068227 13068475 -269125189 - AluSx SINE Alu -45 267 18 1925 271 164 15 chr1 13069149 13069968 -269123696 + MER52A LTR ERV1 51 1089 -666 1607 257 17 6 chr1 13069956 13070314 -269123350 + MER52A LTR ERV1 1392 1753 -2 * 666 252 19 8 chr1 13070314 13070594 -269123070 + L1M1 LINE L1 3442 3724 -3841 698 248 0 12 chr1 13070594 13070755 -269122909 + AluJb SINE Alu 153 311 -1 222 270 14 68 chr1 13070843 13070917 -269122747 + L2 LINE L2 3219 3288 -25 817 72 0 72 chr1 13070925 13071085 -269122579 - AluSg/q SINE Alu 0 313 186 836 170 23 18 chr1 13074246 13074417 -269119247 - AluSx SINE Alu -15 297 126 1727 49 22 4 chr1 13074417 13074642 -269119022 - L1PA4 LINE L1 -4 6151 5923 358 64 0 0 chr1 13074642 13074689 -269118975 + L1PA4 LINE L1 5885 5931 -223 903 141 0 0 chr1 13074689 13074824 -269118840 - AluSx SINE Alu -177 135 1 1398 118 0 5 chr1 13074997 13075208 -269118456 - AluSg SINE Alu -100 210 1 1718 123 4 14 chr1 13075327 13075603 -269118061 - AluSx SINE Alu -39 273 1 371 115 0 0 chr1 13075612 13075664 -269118000 - Alu SINE Alu -249 53 2 286 278 103 16 chr1 13076004 13076130 -269117534 - MIR SINE MIR -9 253 117 1374 170 51 20 chr1 13076871 13077165 -269116499 + AluJo SINE Alu 1 303 -9 1570 166 7 33 chr1 13077165 13077466 -269116198 + AluSp SINE Alu 1 294 -19 1903 155 0 0 chr1 13078716 13079020 -269114644 + AluSx SINE Alu 1 304 -8 1115 125 0 0 chr1 13079506 13079666 -269113998 + AluSx SINE Alu 1 160 -152 444 294 48 0 chr1 13080084 13080210 -269113454 - MIR SINE MIR -12 250 119 5215 72 25 53 chr1 13083245 13084067 -269109597 - SVA Other Other -520 866 68 1220 0 0 53 chr1 13084067 13084257 -269109407 + (GGGAGA)n Simple_repeat Simple_repeat 1 180 0 820 191 7 0 chr1 13084263 13084399 -269109265 - AluSq/x SINE Alu -171 142 6 196 293 67 40 chr1 13084574 13084649 -269109015 - L2 LINE L2 -27 3245 3169 2474 221 104 19 chr1 13084701 13085367 -269108297 + L1MC1 LINE L1 5601 6322 -11 1701 172 7 3 chr1 13085368 13085493 -269108171 + AluSx SINE Alu 1 124 -188 225 0 0 0 chr1 13085493 13085518 -269108146 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1701 172 7 3 chr1 13085518 13085694 -269107970 + AluSx SINE Alu 124 303 -9 1582 183 0 28 chr1 13085699 13086038 -269107626 + AluJb SINE Alu 1 331 0 1960 117 0 3 chr1 13086207 13086490 -269107174 - AluSg SINE Alu -28 282 1 1579 128 43 4 chr1 13086611 13086868 -269106796 - AluSg SINE Alu -43 267 1 1975 138 0 3 chr1 13086879 13087184 -269106480 - AluSp SINE Alu -9 304 1 392 240 78 16 chr1 13087519 13087648 -269106016 - MIR SINE MIR -9 253 117 1395 185 48 7 chr1 13088389 13088680 -269104984 + AluJo SINE Alu 1 303 -9 1488 166 13 36 chr1 13088680 13088981 -269104683 + AluSp SINE Alu 1 294 -19 1450 156 0 50 chr1 13090243 13090564 -269103100 + AluSx SINE Alu 1 305 -7 1807 153 0 3 chr1 13091050 13091344 -269102320 + AluSx SINE Alu 1 293 -19 750 174 22 7 chr1 13091357 13091495 -269102169 - FLAM_C SINE Alu -1 142 3 1675 130 70 0 chr1 13092557 13092842 -269100822 - AluSx SINE Alu -7 305 1 525 188 31 6 chr1 13093840 13094000 -269099664 + CT-rich Low_complexity Low_complexity 2 165 0 1282 195 11 35 chr1 13094000 13094287 -269099377 - AluJb SINE Alu -32 280 1 1562 177 0 0 chr1 13094404 13094664 -269099000 + AluSx SINE Alu 1 260 -52 750 214 0 19 chr1 13095102 13095256 -269098408 - AluSg/x SINE Alu -16 296 146 1297 214 42 11 chr1 13095331 13095476 -269098188 - AluJb SINE Alu -4 298 159 1612 169 0 14 chr1 13095476 13095754 -269097910 + AluSx SINE Alu 7 280 -32 1297 214 42 11 chr1 13095754 13095893 -269097771 - AluJb SINE Alu -143 159 5 1646 163 14 0 chr1 13096473 13096761 -269096903 + AluSx SINE Alu 5 296 -16 2924 198 60 2 chr1 13097131 13097701 -269095963 + LTR26 LTR ERV1 1 603 0 488 246 8 8 chr1 13097834 13097964 -269095700 + MER65A LTR ERV1 211 340 -105 888 205 164 17 chr1 13098184 13098477 -269095187 + LTR44 LTR ERV1 1 336 -183 270 176 0 0 chr1 13098565 13098616 -269095048 + Alu SINE Alu 250 300 -1 1652 158 11 0 chr1 13098628 13098900 -269094764 + AluSc SINE Alu 9 283 -26 1880 145 0 3 chr1 13099282 13099597 -269094067 - AluSc SINE Alu 0 314 1 232 197 16 0 chr1 13099652 13099713 -269093951 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1946 134 3 0 chr1 13099715 13100006 -269093658 - AluSq SINE Alu -21 292 1 2015 133 3 9 chr1 13100549 13100864 -269092800 + AluSp SINE Alu 1 313 0 929 218 5 9 chr1 13101052 13101272 -269092392 + L1MA4 LINE L1 5473 5691 -609 759 126 0 0 chr1 13101272 13101375 -269092289 - AluSq/x SINE Alu -210 103 1 2796 194 27 5 chr1 13101375 13101928 -269091736 + L1MA4 LINE L1 5686 6250 -50 1379 151 0 5 chr1 13101928 13102146 -269091518 + AluSq SINE Alu 1 217 -96 1646 166 0 17 chr1 13102457 13102813 -269090851 + AluSx SINE Alu 1 312 0 1448 168 67 18 chr1 13103898 13104183 -269089481 - AluSg SINE Alu -11 299 1 184 227 68 0 chr1 13104457 13104501 -269089163 + L2 LINE L2 3262 3308 -5 1837 164 0 0 chr1 13105540 13105845 -269087819 + AluSx SINE Alu 1 305 -7 1672 179 0 3 chr1 13106329 13106625 -269087039 + AluSx SINE Alu 1 295 -17 749 161 21 28 chr1 13106634 13106777 -269086887 - FLAM_C SINE Alu 0 143 2 182 230 27 81 chr1 13107965 13108039 -269085625 + L2 LINE L2 3202 3271 -1 2096 116 3 0 chr1 13109700 13110011 -269083653 + AluSx SINE Alu 1 312 0 1266 234 0 7 chr1 13110152 13110460 -269083204 + AluJb SINE Alu 1 306 -6 854 206 8 124 chr1 13110547 13110680 -269082984 + AluJo SINE Alu 3 93 -219 2024 151 0 0 chr1 13110680 13110991 -269082673 + AluSx SINE Alu 1 311 -1 854 206 8 124 chr1 13110991 13111114 -269082550 + AluJo SINE Alu 93 229 -83 1490 168 91 131 chr1 13111524 13112065 -269081599 - LTR44 LTR ERV1 0 519 1 500 243 97 5 chr1 13112242 13112427 -269081237 - MER65A LTR ERV1 -33 412 211 2964 193 60 2 chr1 13112562 13113132 -269080532 - LTR26 LTR ERV1 0 603 1 27 0 0 0 chr1 13113326 13113353 -269080311 + AT_rich Low_complexity Low_complexity 1 27 0 1653 161 14 0 chr1 13113510 13113796 -269079868 - AluSx SINE Alu -22 290 1 789 172 0 0 chr1 13116103 13116225 -269077439 + FLAM_C SINE Alu 5 126 -17 1648 164 0 4 chr1 13116241 13116522 -269077142 - AluSx SINE Alu -32 280 1 623 174 30 8 chr1 13116551 13116683 -269076981 - LTR5 LTR ERVK 0 969 835 2863 194 18 10 chr1 13116803 13117421 -269076243 - LTR5 LTR ERVK -346 623 1 815 185 20 20 chr1 13117421 13117572 -269076092 + AluJb SINE Alu 143 293 -19 1802 146 3 0 chr1 13117813 13118101 -269075563 + AluSx SINE Alu 1 289 -23 246 237 17 0 chr1 13118110 13118169 -269075495 - MER94 DNA DNA -62 72 13 1823 147 14 0 chr1 13118781 13119066 -269074598 - AluSg SINE Alu -21 289 1 272 112 49 55 chr1 13119074 13119149 -269074515 + LTR45B LTR ERV1 412 525 0 252 247 34 22 chr1 13119329 13119418 -269074246 + MER57-int LTR ERV1 6065 6154 -1383 1632 167 86 134 chr1 13120217 13120762 -269072902 - LTR44 LTR ERV1 0 519 1 671 209 81 24 chr1 13120908 13121119 -269072545 - MER65A LTR ERV1 -12 433 211 2904 206 45 2 chr1 13121254 13121832 -269071832 - LTR26 LTR ERV1 0 603 1 1747 164 7 0 chr1 13122200 13122510 -269071154 - AluSx SINE Alu 0 312 1 1280 185 3 100 chr1 13123083 13123204 -269070460 + AluJb SINE Alu 5 136 -176 1493 182 0 21 chr1 13123204 13123490 -269070174 - AluSx SINE Alu -20 292 13 1280 185 3 100 chr1 13123490 13123709 -269069955 + AluJb SINE Alu 136 312 0 818 188 0 0 chr1 13123790 13123934 -269069730 + AluSg/x SINE Alu 138 281 -29 225 0 0 0 chr1 13124360 13124385 -269069279 + (TC)n Simple_repeat Simple_repeat 2 26 0 1767 161 23 0 chr1 13124385 13124690 -269068974 - AluSx SINE Alu 0 312 1 805 147 0 63 chr1 13124815 13124958 -269068706 + AluJo SINE Alu 9 142 -170 318 263 98 8 chr1 13126698 13126831 -269066833 - L1M4 LINE L1 -2194 3952 3808 1686 138 4 0 chr1 13126855 13127116 -269066548 - AluSp SINE Alu -2 311 50 857 207 34 15 chr1 13127116 13127459 -269066205 - GSATII Satellite centromeric -16 349 1 1802 152 14 0 chr1 13128394 13128684 -269064980 + AluSg SINE Alu 1 294 -16 1941 135 3 0 chr1 13129342 13129638 -269064026 - AluSx SINE Alu -15 297 1 529 268 71 94 chr1 13129750 13129934 -269063730 - MIR SINE MIR 0 262 84 1583 88 5 0 chr1 13129934 13130150 -269063514 - AluY SINE Alu -13 298 82 529 268 71 94 chr1 13130150 13130219 -269063445 - MIR SINE MIR -178 84 15 650 311 57 36 chr1 13130343 13130520 -269063144 - L1M4 LINE L1 -2172 3974 3802 2067 129 3 0 chr1 13130520 13130830 -269062834 - AluSp SINE Alu -2 311 1 650 311 57 36 chr1 13130830 13130895 -269062769 - L1M4 LINE L1 -2344 3802 3740 1781 162 33 0 chr1 13130895 13131197 -269062467 + AluSx SINE Alu 1 312 0 650 311 57 36 chr1 13131197 13131339 -269062325 - L1M4 LINE L1 -2406 3740 3581 445 167 0 0 chr1 13131351 13131417 -269062247 + AluS SINE Alu 2 67 -242 3295 192 3 7 chr1 13131624 13132227 -269061437 - HERVE LTR ERV1 -6230 1583 983 1032 42 60 0 chr1 13133074 13133241 -269060423 + CT-rich Low_complexity Low_complexity 4 180 0 237 65 0 0 chr1 13133264 13133295 -269060369 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 1502 211 3 10 chr1 13133295 13133599 -269060065 - AluJb SINE Alu -10 302 1 333 283 44 18 chr1 13135064 13135177 -269058487 - L1M4 LINE L1 -3104 3042 2927 29 0 0 0 chr1 13135191 13135220 -269058444 + AT_rich Low_complexity Low_complexity 1 29 0 370 178 0 4 chr1 13135560 13135635 -269058029 - AluS SINE Alu -250 58 6 817 209 14 19 chr1 13135691 13135872 -269057792 - AluSg/x SINE Alu -13 296 115 324 0 0 0 chr1 13135872 13135908 -269057756 + (TTA)n Simple_repeat Simple_repeat 2 37 0 817 209 14 19 chr1 13135908 13135941 -269057723 - AluSg/x SINE Alu -194 115 83 383 186 0 0 chr1 13135941 13136000 -269057664 - AluSc SINE Alu -51 248 190 843 165 8 0 chr1 13136000 13136133 -269057531 - AluSq/x SINE Alu -176 136 3 645 193 0 0 chr1 13139587 13139701 -269053963 - AluJb SINE Alu -196 116 3 1432 203 3 3 chr1 13140116 13140411 -269053253 - AluSx SINE Alu 0 312 18 321 314 16 24 chr1 13141122 13141246 -269052418 + MER52A LTR ERV1 51 173 -1582 1577 198 38 3 chr1 13141290 13141581 -269052083 + MER52A LTR ERV1 1099 1385 -71 919 208 38 20 chr1 13141579 13142993 -269050671 + GSATII Satellite centromeric 1 1439 -120 * 444 82 0 0 chr1 13143006 13143067 -269050597 + (TA)n Simple_repeat Simple_repeat 2 62 0 228 289 11 0 chr1 13144004 13144094 -269049570 + (CTA)n Simple_repeat Simple_repeat 1 91 0 282 319 26 0 chr1 13144362 13144478 -269049186 + Tigger6 DNA MER2_type 1114 1232 -365 1462 142 9 0 chr1 13144478 13144704 -269048960 + AluSg SINE Alu 1 228 -82 14841 181 15 15 chr1 13144704 13145088 -269048576 - HERV3 LTR ERV1 -2202 6224 5842 1914 126 3 23 chr1 13145088 13145398 -269048266 + AluY SINE Alu 1 304 -7 14841 181 15 15 chr1 13145398 13147536 -269046128 - HERV3 LTR ERV1 -2584 5842 3701 487 160 20 10 chr1 13147538 13147638 -269046026 - LTR5 LTR ERVK -1 968 868 6726 210 57 18 chr1 13147643 13149349 -269044315 - HERV3 LTR ERV1 -6778 1648 1 2577 116 122 59 chr1 13149349 13149763 -269043901 - LTR61 LTR ERV1 -1 594 135 221 0 35 0 chr1 13149763 13149792 -269043872 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2577 116 122 59 chr1 13149792 13149936 -269043728 - LTR61 LTR ERV1 -460 135 1 1995 150 0 0 chr1 13150007 13150313 -269043351 + AluSx SINE Alu 5 310 -2 945 224 35 9 chr1 13150400 13150628 -269043036 + AluJb SINE Alu 61 294 -18 1683 182 3 3 chr1 13151657 13152025 -269041639 - AluSx SINE Alu 0 368 1 195 293 67 40 chr1 13152195 13152270 -269041394 - L2 LINE L2 -27 3245 3169 2675 209 98 21 chr1 13152292 13152991 -269040673 + L1MC1 LINE L1 5583 6322 -11 1901 135 0 50 chr1 13152992 13153311 -269040353 + AluSx SINE Alu 1 303 -9 1650 169 0 28 chr1 13153316 13153654 -269040010 + AluJb SINE Alu 1 330 0 1971 109 0 3 chr1 13153823 13154106 -269039558 - AluSg SINE Alu -28 282 1 1658 117 43 4 chr1 13154227 13154484 -269039180 - AluSg SINE Alu -43 267 1 2100 117 0 3 chr1 13154495 13154802 -269038862 - AluSp SINE Alu -7 306 1 356 256 78 16 chr1 13155137 13155266 -269038398 - MIR SINE MIR -9 253 117 1405 188 48 7 chr1 13156007 13156300 -269037364 + AluJo SINE Alu 1 305 -7 1634 159 7 33 chr1 13156300 13156601 -269037063 + AluSp SINE Alu 1 294 -19 1892 157 0 0 chr1 13157861 13158166 -269035498 + AluSx SINE Alu 1 305 -7 1874 142 0 3 chr1 13158652 13158948 -269034716 + AluSx SINE Alu 1 295 -17 721 165 23 23 chr1 13158968 13159101 -269034563 - FLAM_C SINE Alu 0 133 1 1687 128 69 0 chr1 13160162 13160450 -269033214 - AluSx SINE Alu -4 308 1 426 201 34 7 chr1 13161452 13161601 -269032063 + CT-rich Low_complexity Low_complexity 2 154 0 1295 180 22 32 chr1 13161601 13161879 -269031785 - AluJb SINE Alu -32 280 6 1456 194 11 0 chr1 13162000 13162273 -269031391 + AluSx SINE Alu 1 276 -36 838 183 0 0 chr1 13162714 13162851 -269030813 - AluSg/x SINE Alu -36 276 140 1301 189 3 59 chr1 13162927 13163111 -269030553 - AluJb SINE Alu -19 293 131 1643 153 0 42 chr1 13163111 13163419 -269030245 + AluSx SINE Alu 1 295 -17 1301 189 3 59 chr1 13163419 13163540 -269030124 - AluJb SINE Alu -181 131 5 307 292 53 26 chr1 13163547 13163660 -269030004 + L1M4 LINE L1 2927 3042 -3104 1759 161 23 0 chr1 13164113 13164417 -269029247 + AluSx SINE Alu 1 311 -1 736 199 7 0 chr1 13164866 13165002 -269028662 - AluSg/x SINE Alu -36 276 140 1381 172 3 71 chr1 13165069 13165270 -269028394 - AluJb SINE Alu -4 308 136 1539 149 10 43 chr1 13165270 13165572 -269028092 + AluSx SINE Alu 1 292 -20 1381 172 3 71 chr1 13165572 13165696 -269027968 - AluJb SINE Alu -176 136 5 1650 153 10 23 chr1 13166267 13166567 -269027097 + AluSx SINE Alu 1 296 -16 2753 199 65 5 chr1 13166938 13167507 -269026157 + LTR26 LTR ERV1 1 603 0 507 231 82 34 chr1 13167640 13167848 -269025816 + MER65A LTR ERV1 211 428 -17 1608 166 90 134 chr1 13167995 13168538 -269025126 + LTR44 LTR ERV1 1 519 0 246 173 93 53 chr1 13169611 13169686 -269023978 - LTR45B LTR ERV1 0 489 412 1830 157 14 0 chr1 13169696 13169990 -269023674 + AluSg SINE Alu 3 300 -10 1816 136 3 0 chr1 13170653 13170940 -269022724 - AluSx SINE Alu -24 288 1 1599 143 6 89 chr1 13171185 13171360 -269022304 - AluJb SINE Alu -19 293 154 1773 142 0 4 chr1 13171360 13171641 -269022023 + AluSx SINE Alu 1 280 -32 1599 143 6 89 chr1 13171641 13171780 -269021884 - AluJb SINE Alu -158 154 5 300 286 62 27 chr1 13173520 13173632 -269020032 + L1M4 LINE L1 2927 3042 -3104 1737 127 14 0 chr1 13174089 13174364 -269019300 + AluSx SINE Alu 1 279 -33 315 0 0 0 chr1 13174364 13174399 -269019265 + (CAA)n Simple_repeat Simple_repeat 1 35 0 1819 136 4 0 chr1 13174767 13175109 -269018555 + AluSq SINE Alu 13 355 0 1912 138 0 3 chr1 13175164 13175479 -269018185 + AluSc SINE Alu 1 314 0 1812 145 0 11 chr1 13175831 13176151 -269017513 - AluSc SINE Alu 0 317 1 343 129 16 16 chr1 13176152 13176214 -269017450 - Alu SINE Alu 0 308 247 887 201 167 17 chr1 13176292 13176580 -269017084 - LTR44 LTR ERV1 -183 336 6 2819 207 60 2 chr1 13176668 13177238 -269016426 - LTR26 LTR ERV1 0 603 1 1547 169 10 24 chr1 13177608 13177904 -269015760 - AluSx SINE Alu -16 296 5 1403 188 3 52 chr1 13178481 13178602 -269015062 + AluJb SINE Alu 5 130 -182 1687 154 0 39 chr1 13178602 13178907 -269014757 - AluSx SINE Alu -19 293 1 1403 188 3 52 chr1 13178907 13179093 -269014571 + AluJb SINE Alu 130 297 -15 848 161 0 0 chr1 13179175 13179312 -269014352 + AluSg/x SINE Alu 140 276 -36 1721 163 20 0 chr1 13179749 13180055 -269013609 - AluSx SINE Alu 0 312 1 1209 187 112 11 chr1 13180635 13180756 -269012908 + AluJb SINE Alu 5 112 -200 1643 159 0 37 chr1 13180756 13181051 -269012613 - AluSx SINE Alu -22 290 7 1209 187 112 11 chr1 13181051 13181196 -269012468 + AluJb SINE Alu 112 298 -14 736 181 0 56 chr1 13181271 13181431 -269012233 + AluSg/x SINE Alu 146 296 -16 1562 177 0 0 chr1 13181869 13182129 -269011535 - AluSx SINE Alu -52 260 1 1332 192 7 31 chr1 13182246 13182533 -269011131 + AluJb SINE Alu 1 280 -32 492 194 31 6 chr1 13182533 13182693 -269010971 + GA-rich Low_complexity Low_complexity 2 165 0 1733 121 71 0 chr1 13183691 13183972 -269009692 + AluSx SINE Alu 1 301 -11 727 168 21 28 chr1 13185033 13185176 -269008488 + FLAM_C SINE Alu 2 143 0 1672 179 0 3 chr1 13185185 13185481 -269008183 - AluSx SINE Alu -17 295 1 1847 161 0 0 chr1 13185965 13186264 -269007400 - AluSx SINE Alu -8 304 6 1640 159 7 33 chr1 13187529 13187831 -269005833 - AluSp SINE Alu -19 294 1 1380 190 48 7 chr1 13187831 13188119 -269005545 - AluJo SINE Alu -10 302 3 379 248 78 16 chr1 13188868 13188997 -269004667 + MIR SINE MIR 117 253 -9 1915 141 3 3 chr1 13189332 13189636 -269004028 + AluSp SINE Alu 1 304 -9 1620 124 43 4 chr1 13189650 13189907 -269003757 + AluSg SINE Alu 1 267 -43 1917 120 0 3 chr1 13190028 13190311 -269003353 + AluSg SINE Alu 1 282 -28 1340 187 0 0 chr1 13190480 13190733 -269002931 - AluJb SINE Alu 0 310 58 1474 170 0 57 chr1 13190737 13191020 -269002644 - AluSx SINE Alu -45 267 1 2472 219 104 19 chr1 13191021 13191687 -269001977 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 13191739 13191814 -269001850 + L2 LINE L2 3169 3245 -27 833 194 7 0 chr1 13191987 13192126 -269001538 + AluSq/x SINE Alu 3 142 -171 22025 77 1 0 chr1 13192131 13194963 -268998701 + L1PA7 LINE L1 8 2840 -3306 1553 49 0 0 chr1 13194959 13195144 -268998520 - L1PA4 LINE L1 -172 5983 5799 * 1082 54 0 27 chr1 13195144 13195287 -268998377 + L1PA4 LINE L1 6013 6155 0 * 18637 83 17 14 chr1 13195281 13198770 -268994894 + L1PA7 LINE L1 2827 6321 0 1160 82 0 22 chr1 13198586 13198830 -268994834 + (GAAA)n Simple_repeat Simple_repeat 1 240 0 396 111 0 0 chr1 13198843 13198906 -268994758 + (GGGAA)n Simple_repeat Simple_repeat 2 64 0 1369 265 44 40 chr1 13199029 13199226 -268994438 + MER41E LTR ERV1 13 208 -304 1984 122 3 0 chr1 13199226 13199540 -268994124 + AluSp SINE Alu 1 315 0 1369 265 44 40 chr1 13199540 13199816 -268993848 + MER41E LTR ERV1 208 490 -22 2615 244 9 63 chr1 13199970 13200916 -268992748 - L1 LINE L1 -1297 6268 5374 935 250 11 0 chr1 13200972 13201310 -268992354 - L1 LINE L1 -3780 3785 3441 5700 226 35 78 chr1 13201313 13202939 -268990725 - MER52A LTR ERV1 -6 1749 61 1278 247 0 0 chr1 13203648 13203935 -268989729 + AluSx SINE Alu 19 305 -7 440 210 17 42 chr1 13204319 13204438 -268989226 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 13204446 13204488 -268989176 + AT_rich Low_complexity Low_complexity 1 42 0 630 181 0 2 chr1 13207777 13208015 -268985649 + AluSx SINE Alu 3 292 -17 735 237 0 0 chr1 13208034 13208203 -268985461 + AluSx SINE Alu 129 297 -15 1838 139 3 0 chr1 13208279 13208566 -268985098 + AluSq SINE Alu 1 288 -25 26 0 0 0 chr1 13208864 13208890 -268984774 + AT_rich Low_complexity Low_complexity 1 26 0 1359 179 7 52 chr1 13209932 13210240 -268983424 - AluSx SINE Alu -14 298 5 1687 167 17 0 chr1 13210820 13211114 -268982550 + AluY SINE Alu 3 301 -10 1336 71 0 16 chr1 13211130 13211439 -268982225 + (GAAA)n Simple_repeat Simple_repeat 1 303 0 803 260 0 10 chr1 13211440 13211636 -268982028 + AluJb SINE Alu 16 209 -103 863 229 37 0 chr1 13213621 13213839 -268979825 + AluSg/x SINE Alu 85 310 -2 1848 164 0 0 chr1 13214368 13214672 -268978992 + AluSc SINE Alu 1 304 -5 3545 202 24 48 chr1 13214842 13215816 -268977848 + LTR5 LTR ERVK 6 955 -14 32587 188 29 29 chr1 13215828 13223352 -268970312 + HERVK LTR ERVK 1 7392 -25 3398 190 22 58 chr1 13223361 13224300 -268969364 + LTR5 LTR ERVK 1 906 -63 979 199 31 49 chr1 13224585 13224871 -268968793 + LTR5 LTR ERVK 675 955 -14 2287 159 36 5 chr1 13224898 13225288 -268968376 + LTR57 LTR ERVL 3 404 -7 288 305 55 8 chr1 13225991 13226119 -268967545 + MIR SINE MIR 117 250 -12 3264 177 11 36 chr1 13226177 13226493 -268967171 + MER49 LTR ERV1 1 294 -629 2156 108 0 0 chr1 13226493 13226790 -268966874 - AluSg SINE Alu -13 297 1 3264 177 11 36 chr1 13226790 13227110 -268966554 + MER49 LTR ERV1 294 621 -302 404 230 0 104 chr1 13227122 13227257 -268966407 + AluSq/x SINE Alu 10 130 -173 542 131 61 0 chr1 13227631 13227730 -268965934 + pTR5 LTR ERV1 1028 1132 -1306 * 784 171 55 61 chr1 13227728 13227892 -268965772 - pTR5 LTR ERV1 -1533 905 743 605 200 81 142 chr1 13227923 13228233 -268965431 - LTR16A1 LTR ERVL -106 351 61 1987 130 0 13 chr1 13228498 13228634 -268965030 + AluSq SINE Alu 1 137 -176 2170 98 0 7 chr1 13228634 13228930 -268964734 + AluSg1 SINE Alu 2 295 -14 1987 130 0 13 chr1 13228930 13229094 -268964570 + AluSq SINE Alu 137 297 -16 197 33 33 0 chr1 13229784 13229814 -268963850 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 332 67 22 0 chr1 13229816 13229861 -268963803 - AluSp/q SINE Alu -20 283 238 6426 121 139 59 chr1 13229864 13231363 -268962301 - pTR5 LTR ERV1 0 2438 745 442 202 0 39 chr1 13231370 13231474 -268962190 - AluSg/x SINE Alu -76 236 137 2394 119 5 31 chr1 13231502 13232067 -268961597 + MER51A LTR ERV1 1 634 0 335 227 0 109 chr1 13232782 13232910 -268960754 + L2 LINE L2 2946 3059 -254 431 254 124 46 chr1 13233314 13233600 -268960064 - MLT1G1 LTR MaLR -274 275 1 2331 103 0 7 chr1 13233618 13233920 -268959744 + AluSx SINE Alu 1 300 -12 2293 103 3 25 chr1 13233931 13234250 -268959414 + AluSx SINE Alu 1 312 0 2027 180 73 47 chr1 13234416 13234781 -268958883 - LOR1b LTR ERV1 0 461 80 2214 106 33 0 chr1 13234781 13235084 -268958580 + AluSp SINE Alu 1 313 0 2027 180 73 47 chr1 13235084 13235167 -268958497 - LOR1b LTR ERV1 -381 80 1 219 146 122 0 chr1 13235215 13235256 -268958408 + MER91B DNA MER1_type 18 63 -127 321 271 0 0 chr1 13235544 13235614 -268958050 + MER58 DNA MER1_type 3 72 -143 1382 181 0 0 chr1 13235614 13235857 -268957807 + L1MA9 LINE L1 5884 6126 -186 1078 174 11 26 chr1 13235861 13236051 -268957613 + AluJo SINE Alu 1 187 -125 4005 95 182 129 chr1 13236057 13237351 -268956313 + pTR5 LTR ERV1 743 2438 0 1581 149 4 4 chr1 13237363 13237605 -268956059 + AluSx SINE Alu 64 305 -7 746 215 49 18 chr1 13237605 13237768 -268955896 + AluJo/FRAM SINE Alu 134 301 -11 423 246 94 31 chr1 13237812 13238003 -268955661 + L1MA10 LINE L1 6119 6321 -13 306 208 9 51 chr1 13238008 13238124 -268955540 + MER58 DNA MER1_type 98 2409 -11 2441 81 0 3 chr1 13238533 13238841 -268954823 + AluY SINE Alu 1 307 -4 1221 132 52 5 chr1 13238904 13239116 -268954548 - AluSx SINE Alu -21 291 70 429 194 14 0 chr1 13239224 13239296 -268954368 - AluSx SINE Alu -238 74 2 275 0 29 0 chr1 13239574 13239609 -268954055 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2288 115 0 3 chr1 13239698 13240010 -268953654 + AluSx SINE Alu 1 311 -1 196 241 74 102 chr1 13240071 13240129 -268953535 + L3 LINE CR1 1380 1436 -141 1637 135 34 4 chr1 13240129 13240405 -268953259 + AluSx SINE Alu 40 322 0 196 241 74 102 chr1 13240405 13240453 -268953211 + L3 LINE CR1 1436 1484 -93 355 222 28 0 chr1 13241143 13241215 -268952449 + MIR SINE MIR 72 145 -63 2600 50 0 0 chr1 13241233 13241530 -268952134 + AluY SINE Alu 1 297 -14 995 170 25 0 chr1 13241531 13241690 -268951974 + AluSg/x SINE Alu 133 295 -15 1042 252 8 0 chr1 13241690 13241936 -268951728 + MER49 LTR ERV1 614 861 -62 772 152 38 23 chr1 13241950 13242082 -268951582 - FLAM_C SINE Alu -8 135 2 2293 91 0 3 chr1 13242097 13242393 -268951271 - AluSc SINE Alu -14 295 1 1819 177 75 60 chr1 13242644 13243018 -268950646 + L1PA15 LINE L1 5688 6072 -93 1773 148 59 3 chr1 13243018 13243308 -268950356 + AluSx SINE Alu 1 306 -6 1819 177 75 60 chr1 13243308 13243397 -268950267 + L1PA15 LINE L1 6072 6158 -7 1565 242 90 0 chr1 13243394 13243783 -268949881 - L1M3f LINE L1 -4362 966 543 * 644 123 41 23 chr1 13244596 13244840 -268948824 + AluSx SINE Alu 1 309 0 2312 116 3 0 chr1 13244842 13245152 -268948512 + AluSp SINE Alu 1 311 -2 621 212 9 0 chr1 13245563 13245676 -268947988 + AluJb SINE Alu 3 116 -196 182 230 27 81 chr1 13247260 13247334 -268946330 + L2 LINE L2 3202 3271 -1 182 230 27 81 chr1 13248262 13248336 -268945328 + L2 LINE L2 3202 3271 -1 2450 48 10 7 chr1 13249891 13250186 -268943478 + AluY SINE Alu 1 296 -15 2094 129 3 3 chr1 13250301 13250610 -268943054 + AluSx SINE Alu 1 309 -3 1401 240 0 7 chr1 13250745 13251053 -268942611 + AluJb SINE Alu 1 306 -6 1311 220 10 45 chr1 13251138 13251273 -268942391 + AluJo SINE Alu 1 139 -163 2059 147 3 13 chr1 13251273 13251409 -268942255 + AluSx SINE Alu 1 137 -175 2522 60 0 0 chr1 13251409 13251711 -268941953 + AluY SINE Alu 1 302 -9 2059 147 3 13 chr1 13251711 13251886 -268941778 + AluSx SINE Alu 137 309 -3 1311 220 10 45 chr1 13251886 13252063 -268941601 + AluJo SINE Alu 139 302 0 2386 105 0 0 chr1 13252112 13252416 -268941248 + AluSg SINE Alu 1 304 -6 1088 149 0 0 chr1 13252729 13252890 -268940774 - AluSp SINE Alu -15 298 138 2292 103 0 3 chr1 13253449 13253749 -268939915 + AluSc SINE Alu 1 299 -10 2252 85 7 0 chr1 13253763 13254044 -268939620 + AluY SINE Alu 1 283 -28 207 0 0 0 chr1 13254047 13254070 -268939594 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2254 110 7 0 chr1 13254100 13254401 -268939263 + AluSg SINE Alu 1 303 -7 664 228 36 30 chr1 13254409 13254576 -268939088 + AluSg/x SINE Alu 142 309 -3 195 42 0 0 chr1 13254792 13254816 -268938848 + (GGCTG)n Simple_repeat Simple_repeat 2 25 0 631 211 91 24 chr1 13254893 13255102 -268938562 + MER65A LTR ERV1 211 433 -12 2062 150 6 10 chr1 13255261 13255574 -268938090 + AluSx SINE Alu 1 312 0 1449 181 70 7 chr1 13255574 13256028 -268937636 + LTR44 LTR ERV1 7 519 0 1626 191 11 0 chr1 13256070 13256367 -268937297 + AluJb SINE Alu 7 306 0 1749 115 4 0 chr1 13256367 13256602 -268937062 + AluSp SINE Alu 1 236 -77 183 42 0 0 chr1 13256707 13256731 -268936933 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 846 151 0 8 chr1 13256733 13256859 -268936805 - FRAM SINE Alu -18 158 34 1720 156 3 62 chr1 13257028 13257349 -268936315 + AluJb SINE Alu 11 312 0 2035 148 3 0 chr1 13257431 13257728 -268935936 + AluSx SINE Alu 1 298 -14 1982 144 11 0 chr1 13257810 13258095 -268935569 - AluSx SINE Alu -24 288 1 647 265 86 97 chr1 13258349 13258522 -268935142 - LTR1B LTR ERV1 -302 524 351 2196 89 0 59 chr1 13258522 13258846 -268934818 + AluSx SINE Alu 2 306 -6 647 265 86 97 chr1 13258846 13259159 -268934505 - LTR1B LTR ERV1 -475 351 43 1428 121 43 0 chr1 13259186 13259393 -268934271 + AluSc SINE Alu 88 303 -6 1879 225 45 73 chr1 13259394 13260062 -268933602 + MER72-int LTR ERV1 6110 6758 0 1148 163 19 54 chr1 13260063 13260076 -268933588 + MER72 LTR ERV1 1 13 -709 2436 75 3 7 chr1 13260076 13260381 -268933283 + AluSg1 SINE Alu 1 304 -5 1148 163 19 54 chr1 13260381 13260625 -268933039 + MER72 LTR ERV1 13 249 -473 285 168 53 116 chr1 13260606 13260656 -268933008 + MER72 LTR ERV1 608 651 -71 * 2189 101 17 0 chr1 13260656 13260952 -268932712 - AluSx SINE Alu -11 301 1 285 168 53 116 chr1 13260952 13260996 -268932668 + MER72 LTR ERV1 651 696 -26 4384 137 31 53 chr1 13261096 13261298 -268932366 - MER4E LTR ERV1 0 779 574 2407 110 0 0 chr1 13261298 13261608 -268932056 + AluSx SINE Alu 2 311 -1 4384 137 31 53 chr1 13261608 13261619 -268932045 - MER4E LTR ERV1 -205 574 564 2037 146 0 19 chr1 13261619 13261935 -268931729 + AluSx SINE Alu 1 310 -2 4384 137 31 53 chr1 13261935 13262516 -268931148 - MER4E LTR ERV1 -215 564 1 2098 128 3 3 chr1 13262684 13262989 -268930675 + AluSx SINE Alu 1 305 -7 350 198 76 58 chr1 13262989 13263161 -268930503 + L1M4 LINE L1 3818 3992 -2154 2285 113 3 13 chr1 13263902 13264213 -268929451 - AluSg SINE Alu -2 308 1 1213 142 6 0 chr1 13264259 13264442 -268929222 - AluSx SINE Alu -8 304 121 2237 115 7 0 chr1 13264477 13264781 -268928883 - AluSg SINE Alu -4 306 1 880 149 0 15 chr1 13264785 13264919 -268928745 - AluSx SINE Alu -181 132 1 1507 148 13 4 chr1 13264930 13265166 -268928498 - AluSg/x SINE Alu -9 303 66 295 203 0 0 chr1 13265166 13265230 -268928434 - AluSc SINE Alu -76 223 160 422 212 258 23 chr1 13265232 13265364 -268928300 + AluJb SINE Alu 8 170 -142 2037 140 20 0 chr1 13265459 13265752 -268927912 + AluSx SINE Alu 1 299 -13 1473 197 14 10 chr1 13265841 13266130 -268927534 - AluSx SINE Alu -18 294 5 647 239 49 0 chr1 13266195 13266337 -268927327 - AluJo SINE Alu -162 150 2 1396 220 0 35 chr1 13266418 13266732 -268926932 - AluJb SINE Alu -9 303 1 1996 139 14 3 chr1 13266743 13267038 -268926626 - AluSg SINE Alu -12 298 1 1332 140 8 47 chr1 13270313 13270548 -268923116 - AluSg/x SINE Alu -2 310 85 777 76 0 3 chr1 13270548 13270713 -268922951 - AluY SINE Alu -62 249 35 918 131 0 7 chr1 13270713 13270850 -268922814 - AluSq/x SINE Alu -177 136 1 263 295 19 0 chr1 13271789 13271894 -268921770 + L1M3f LINE L1 543 649 -4679 639 234 0 0 chr1 13271895 13272002 -268921662 - FLAM_C SINE Alu -34 109 3 11104 38 6 56 chr1 13272016 13273419 -268920245 - SVA Other Other 0 1386 53 243 0 0 0 chr1 13273419 13273446 -268920218 + (GGGAGA)n Simple_repeat Simple_repeat 3 29 0 3655 171 15 59 chr1 13273467 13273516 -268920148 - L1MA4 LINE L1 -6 6294 6244 198 0 0 0 chr1 13273516 13273538 -268920126 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 2077 131 0 0 chr1 13273540 13273823 -268919841 - AluSx SINE Alu -29 283 1 3655 171 15 59 chr1 13273823 13274071 -268919593 - L1MA4 LINE L1 -57 6243 5986 2434 87 3 10 chr1 13274071 13274380 -268919284 - AluY SINE Alu 0 311 5 3655 171 15 59 chr1 13274380 13274711 -268918953 - L1MA4 LINE L1 -314 5986 5706 2184 134 3 3 chr1 13274711 13275024 -268918640 + AluSq SINE Alu 1 313 0 3655 171 15 59 chr1 13275024 13275240 -268918424 - L1MA4 LINE L1 -594 5706 5482 812 203 0 0 chr1 13275247 13275380 -268918284 - FLAM_C SINE Alu 0 133 1 1654 202 7 3 chr1 13275576 13275883 -268917781 - AluJo SINE Alu -4 308 1 1031 121 0 0 chr1 13276099 13276231 -268917433 + AluSq/x SINE Alu 1 132 -180 2259 115 3 0 chr1 13276231 13276535 -268917129 + AluSg SINE Alu 1 305 -5 2210 116 10 0 chr1 13276873 13277183 -268916481 - AluSp SINE Alu 0 313 1 2228 120 0 19 chr1 13277744 13278095 -268915569 + AluSq SINE Alu 1 313 0 2034 137 3 3 chr1 13278150 13278443 -268915221 + AluSc SINE Alu 1 293 -16 482 105 0 20 chr1 13278762 13279030 -268914634 - AluSc SINE Alu -2 307 2 2373 80 7 3 chr1 13279030 13279331 -268914333 - AluSg SINE Alu -8 302 1 2325 95 3 0 chr1 13279589 13279883 -268913781 - AluSg SINE Alu -14 296 2 2115 112 0 11 chr1 13279894 13280215 -268913449 - AluSx SINE Alu 0 318 1 289 301 61 89 chr1 13280431 13280677 -268912987 + L2 LINE L2 1552 1790 -1524 1985 146 27 0 chr1 13280680 13280974 -268912690 + AluJb SINE Alu 1 302 -10 1691 138 43 0 chr1 13281253 13281506 -268912158 + AluSq SINE Alu 1 264 -49 762 93 0 0 chr1 13284616 13284724 -268908940 + (GGGA)n Simple_repeat Simple_repeat 1 108 0 187 345 43 9 chr1 13285349 13285465 -268908199 - MIR SINE MIR -80 182 63 1025 271 61 17 chr1 13287388 13287750 -268905914 - Tigger6 DNA MER2_type -12 1585 1208 283 339 199 0 chr1 13289106 13289277 -268904387 - MIR SINE MIR 0 262 58 387 138 0 0 chr1 13289528 13289586 -268904078 + AluSc SINE Alu 232 289 -10 239 254 17 0 chr1 13289591 13289650 -268904014 - MER94 DNA DNA -62 72 13 1954 53 0 0 chr1 13289732 13289976 -268903688 - L1PA4 LINE L1 0 6155 5912 40766 48 1 21 chr1 13289983 13292562 -268901102 - L1PA4 LINE L1 -1097 5049 2549 336 171 0 40 chr1 13292562 13292638 -268901026 + LTR30 LTR ERV1 552 624 -98 40766 48 1 21 chr1 13292638 13295125 -268898539 - L1PA4 LINE L1 -3597 2549 13 1909 122 30 3 chr1 13295659 13295954 -268897710 - AluSx SINE Alu -8 304 2 261 229 4 74 chr1 13296316 13296389 -268897275 + LTR45 LTR ERV1 327 404 -88 1990 121 0 66 chr1 13296389 13296568 -268897096 - AluSg SINE Alu 0 310 162 9943 48 58 14 chr1 13296568 13297911 -268895753 - SVA Other Other 0 1386 1 1990 121 0 66 chr1 13297911 13298063 -268895601 - AluSg SINE Alu -148 162 1 261 229 4 74 chr1 13298063 13298081 -268895583 + LTR45 LTR ERV1 404 412 -80 1778 175 0 0 chr1 13298081 13298373 -268895291 - AluSg SINE Alu -18 292 1 261 229 4 74 chr1 13298373 13298387 -268895277 + LTR45 LTR ERV1 412 425 -67 25 31 0 0 chr1 13299356 13299388 -268894276 + AT_rich Low_complexity Low_complexity 1 32 0 1463 170 88 137 chr1 13299426 13299972 -268893692 - LTR44 LTR ERV1 0 519 1 764 197 82 19 chr1 13300120 13300328 -268893336 - MER65A LTR ERV1 -14 431 211 3010 198 45 2 chr1 13300466 13301042 -268892622 - LTR26 LTR ERV1 -2 601 1 1617 172 7 0 chr1 13301414 13301704 -268891960 - AluSx SINE Alu -20 292 1 1275 190 0 117 chr1 13302280 13302418 -268891246 + AluJb SINE Alu 5 85 -217 1698 160 0 4 chr1 13302418 13302699 -268890965 - AluSx SINE Alu -32 280 1 1275 190 0 117 chr1 13302699 13302886 -268890778 + AluJb SINE Alu 85 292 -10 809 183 0 0 chr1 13302966 13303103 -268890561 + AluSg/x SINE Alu 138 274 -36 1567 166 4 0 chr1 13303573 13303832 -268889832 - AluSx SINE Alu -52 260 1 800 141 0 63 chr1 13303962 13304104 -268889560 + AluJo SINE Alu 14 146 -166 184 227 68 0 chr1 13305742 13305786 -268887878 - L2 LINE L2 -5 3308 3262 1448 168 67 18 chr1 13306060 13306345 -268887319 + AluSg SINE Alu 1 299 -11 1646 166 0 17 chr1 13307430 13307786 -268885878 - AluSx SINE Alu 0 312 1 1364 156 0 5 chr1 13308097 13308315 -268885349 - AluSq SINE Alu -96 217 1 2771 192 29 5 chr1 13308315 13308867 -268884797 - L1MA4 LINE L1 -50 6250 5686 759 126 0 0 chr1 13308867 13308970 -268884694 + AluSq/x SINE Alu 1 103 -210 946 222 0 9 chr1 13308970 13309191 -268884473 - L1MA4 LINE L1 -609 5691 5473 1954 143 3 9 chr1 13309379 13309694 -268883970 - AluSp SINE Alu 0 313 1 1998 124 3 0 chr1 13310237 13310591 -268883073 + AluSq SINE Alu 1 355 0 1853 148 0 3 chr1 13310646 13310961 -268882703 + AluSc SINE Alu 1 314 0 1766 142 3 11 chr1 13311313 13311632 -268882032 - AluSc SINE Alu 0 317 1 293 157 0 0 chr1 13311633 13311684 -268881980 - Alu SINE Alu -1 299 249 969 191 164 17 chr1 13311772 13312065 -268881599 - LTR44 LTR ERV1 -183 336 1 513 239 8 8 chr1 13312285 13312415 -268881249 - MER65A LTR ERV1 -105 340 211 2896 200 60 2 chr1 13312548 13313118 -268880546 - LTR26 LTR ERV1 0 603 1 1685 142 17 3 chr1 13313488 13313776 -268879888 - AluSx SINE Alu -16 296 5 23 0 0 0 chr1 13314236 13314259 -268879405 + AT_rich Low_complexity Low_complexity 1 23 0 1269 199 112 11 chr1 13314360 13314481 -268879183 + AluJb SINE Alu 5 112 -190 1640 162 0 37 chr1 13314481 13314778 -268878886 - AluSx SINE Alu -20 292 7 1269 199 112 11 chr1 13314778 13314923 -268878741 + AluJb SINE Alu 112 298 -4 782 183 0 0 chr1 13314998 13315129 -268878535 + AluSg/x SINE Alu 144 274 -36 1553 177 0 0 chr1 13315590 13315850 -268877814 - AluSx SINE Alu -52 260 1 1294 199 7 31 chr1 13315967 13316254 -268877410 + AluJb SINE Alu 1 280 -32 504 194 31 6 chr1 13316254 13316414 -268877250 + GA-rich Low_complexity Low_complexity 2 165 0 1603 139 71 0 chr1 13317412 13317692 -268875972 + AluSx SINE Alu 1 300 -12 737 180 22 7 chr1 13318753 13318892 -268874772 + FLAM_C SINE Alu 2 142 -1 1800 153 0 3 chr1 13318905 13319199 -268874465 - AluSx SINE Alu -19 293 1 1865 161 0 0 chr1 13319685 13319989 -268873675 - AluSx SINE Alu -8 304 1 1620 162 7 33 chr1 13321249 13321551 -268872113 - AluSp SINE Alu -19 294 1 1345 192 48 7 chr1 13321551 13321841 -268871823 - AluJo SINE Alu -9 303 1 379 248 78 16 chr1 13322582 13322711 -268870953 + MIR SINE MIR 117 253 -9 1887 141 3 3 chr1 13323046 13323345 -268870319 + AluSp SINE Alu 1 299 -14 1656 117 43 4 chr1 13323361 13323618 -268870046 + AluSg SINE Alu 1 267 -43 1917 120 0 3 chr1 13323739 13324022 -268869642 + AluSg SINE Alu 1 282 -28 1625 176 0 28 chr1 13324191 13324514 -268869150 - AluJb SINE Alu 0 315 1 1609 176 0 50 chr1 13324519 13324838 -268868826 - AluSx SINE Alu -9 303 1 2487 218 104 19 chr1 13324839 13325505 -268868159 - L1MC1 LINE L1 -11 6322 5601 196 293 67 40 chr1 13325557 13325632 -268868032 + L2 LINE L2 3169 3245 -27 833 194 7 0 chr1 13325805 13325944 -268867720 + AluSq/x SINE Alu 3 142 -171 22034 77 1 0 chr1 13325949 13328781 -268864883 + L1PA7 LINE L1 8 2840 -3306 1560 58 0 0 chr1 13328777 13328967 -268864697 - L1PA4 LINE L1 -172 5983 5794 * 1070 70 0 0 chr1 13328967 13329101 -268864563 + L1PA4 LINE L1 6013 6155 0 * 18563 84 17 14 chr1 13329099 13332404 -268861260 + L1PA7 LINE L1 2827 6136 -18 1064 40 0 0 chr1 13332280 13332587 -268861077 + L1PA7 LINE L1 6013 6319 0 1353 50 0 11 chr1 13332405 13332755 -268860909 + (GAAA)n Simple_repeat Simple_repeat 1 528 0 327 130 0 0 chr1 13332767 13332821 -268860843 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 1334 271 44 34 chr1 13332943 13333140 -268860524 + MER41E LTR ERV1 13 206 -306 874 144 7 0 chr1 13333140 13333457 -268860207 + AluSp SINE Alu 1 318 0 1334 271 44 34 chr1 13333457 13333730 -268859934 + MER41E LTR ERV1 206 490 -22 2646 240 13 63 chr1 13333884 13334819 -268858845 - L1 LINE L1 -1297 6268 5381 919 251 11 0 chr1 13334883 13335221 -268858443 - L1 LINE L1 -3780 3785 3441 5692 230 29 72 chr1 13335224 13336859 -268856805 - MER52A LTR ERV1 -6 1749 51 1219 254 0 0 chr1 13337559 13337846 -268855818 + AluSx SINE Alu 19 305 -7 375 175 88 14 chr1 13338230 13338321 -268855343 + AluJ/FLAM SINE Alu 1 62 -240 21 71 0 0 chr1 13338329 13338371 -268855293 + AT_rich Low_complexity Low_complexity 1 42 0 592 184 0 6 chr1 13341748 13341987 -268851677 + AluSx SINE Alu 3 293 -17 723 249 0 0 chr1 13342001 13342174 -268851490 + AluSx SINE Alu 122 294 -16 1784 154 3 0 chr1 13342250 13342542 -268851122 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr1 13342860 13342881 -268850783 + AT_rich Low_complexity Low_complexity 1 21 0 1646 156 4 4 chr1 13343934 13344210 -268849454 - AluSx SINE Alu -26 286 11 792 253 0 15 chr1 13344470 13344672 -268848992 + AluJb SINE Alu 15 213 -99 473 295 90 35 chr1 13344954 13345015 -268848649 + L1M4 LINE L1 3729 3785 -2361 2134 119 3 0 chr1 13345015 13345326 -268848338 + AluSp SINE Alu 1 312 -1 473 295 90 35 chr1 13345326 13345587 -268848077 + L1M4 LINE L1 3785 4087 -2059 559 284 72 68 chr1 13345630 13345695 -268847969 + MIR SINE MIR 12 75 -187 1636 66 5 0 chr1 13345695 13345906 -268847758 + AluY SINE Alu 82 293 -18 559 284 72 68 chr1 13345906 13346090 -268847574 + MIR SINE MIR 75 262 0 1589 141 6 73 chr1 13346202 13346515 -268847149 + AluSx SINE Alu 1 292 -20 242 237 17 0 chr1 13346519 13346578 -268847086 - MER94 DNA DNA -62 72 13 1811 113 33 4 chr1 13347010 13347284 -268846380 - AluSx SINE Alu -28 284 3 321 242 12 127 chr1 13347631 13347710 -268845954 + LTR45B LTR ERV1 328 414 -75 2037 124 7 0 chr1 13347710 13348017 -268845647 - AluSg SINE Alu -1 309 1 321 242 12 127 chr1 13348017 13348034 -268845630 + LTR45B LTR ERV1 414 431 -58 1763 163 3 0 chr1 13348034 13348329 -268845335 - AluSg SINE Alu -14 296 1 321 242 12 127 chr1 13348329 13348396 -268845268 + LTR45B LTR ERV1 431 473 -16 1705 143 4 0 chr1 13349055 13349321 -268844343 - AluSp SINE Alu -44 269 3 445 262 91 11 chr1 13349651 13349838 -268843826 - MER65A LTR ERV1 -33 412 211 2950 186 58 7 chr1 13349973 13350547 -268843117 - LTR26 LTR ERV1 0 603 1 1598 170 14 0 chr1 13350915 13351203 -268842461 - AluSx SINE Alu -20 292 1 5563 19 5 1 chr1 13353194 13353973 -268839691 - L1PA3 LINE L1 -250 5905 5124 399 179 26 0 chr1 13353973 13354051 -268839613 - LTR44 LTR ERV1 -115 404 325 1112 197 153 10 chr1 13354107 13354401 -268839263 - LTR44 LTR ERV1 -183 336 1 673 193 84 38 chr1 13354547 13354760 -268838904 - MER65A LTR ERV1 -12 433 211 2958 201 45 2 chr1 13354895 13355473 -268838191 - LTR26 LTR ERV1 0 603 1 1597 173 13 0 chr1 13355842 13356142 -268837522 - AluSx SINE Alu -8 304 1 1269 181 3 101 chr1 13356717 13356834 -268836830 + AluJb SINE Alu 9 136 -176 1549 171 0 21 chr1 13356834 13357120 -268836544 - AluSx SINE Alu -20 292 13 1269 181 3 101 chr1 13357120 13357338 -268836326 + AluJb SINE Alu 136 311 -1 800 194 0 0 chr1 13357425 13357569 -268836095 + AluSg/x SINE Alu 138 281 -29 1607 179 24 0 chr1 13358003 13358300 -268835364 - AluSx SINE Alu -8 304 1 805 147 0 63 chr1 13358425 13358568 -268835096 + AluJo SINE Alu 9 142 -170 1581 178 59 0 chr1 13360527 13360814 -268832850 + AluSg SINE Alu 6 309 -1 2343 19 0 0 chr1 13361775 13362044 -268831620 - AluYa5 SINE Alu 0 311 43 33 0 0 0 chr1 13362198 13362231 -268831433 + AT_rich Low_complexity Low_complexity 1 33 0 1539 195 3 3 chr1 13362231 13362539 -268831125 - AluSx SINE Alu -4 308 1 1404 141 0 0 chr1 13362854 13363067 -268830597 - AluSq SINE Alu -100 213 1 2777 188 29 7 chr1 13363067 13363621 -268830043 - L1MA4 LINE L1 -50 6250 5685 699 157 0 0 chr1 13363621 13363723 -268829941 + AluSq/x SINE Alu 2 103 -210 980 217 0 9 chr1 13363723 13363944 -268829720 - L1MA4 LINE L1 -609 5691 5473 2101 120 3 0 chr1 13364150 13364450 -268829214 - AluSp SINE Alu -12 301 1 1849 136 4 0 chr1 13365007 13365349 -268828315 + AluSq SINE Alu 13 355 0 1893 141 0 3 chr1 13365404 13365719 -268827945 + AluSc SINE Alu 1 314 0 1795 158 7 10 chr1 13366075 13366385 -268827279 - AluSc SINE Alu 0 309 1 342 115 0 0 chr1 13366385 13366437 -268827227 - Alu SINE Alu 0 301 250 1003 191 160 17 chr1 13366525 13366819 -268826845 - LTR44 LTR ERV1 -183 336 1 513 239 8 8 chr1 13367039 13367169 -268826495 - MER65A LTR ERV1 -105 340 211 2781 211 60 2 chr1 13367302 13367872 -268825792 - LTR26 LTR ERV1 0 603 1 1587 162 10 24 chr1 13368241 13368537 -268825127 - AluSx SINE Alu -16 296 5 1330 194 3 52 chr1 13369114 13369235 -268824429 + AluJb SINE Alu 5 130 -182 1714 153 0 39 chr1 13369235 13369543 -268824121 - AluSx SINE Alu -16 296 1 1330 194 3 52 chr1 13369543 13369731 -268823933 + AluJb SINE Alu 130 299 -13 733 208 0 26 chr1 13369806 13369960 -268823704 + AluSc SINE Alu 144 293 -16 730 197 0 15 chr1 13370399 13370531 -268823133 - AluSc SINE Alu -52 257 128 1253 196 14 32 chr1 13370540 13370825 -268822839 + AluJb SINE Alu 1 280 -32 468 199 32 6 chr1 13370825 13370981 -268822683 + GA-rich Low_complexity Low_complexity 2 161 0 1649 132 71 0 chr1 13371978 13372259 -268821405 + AluSx SINE Alu 1 301 -11 693 188 22 7 chr1 13373320 13373458 -268820206 + FLAM_C SINE Alu 2 141 -2 1820 154 0 3 chr1 13373472 13373765 -268819899 - AluSx SINE Alu -20 292 1 1870 155 7 0 chr1 13374250 13374554 -268819110 - AluSx SINE Alu -6 306 1 1700 149 7 33 chr1 13375814 13376116 -268817548 - AluSq SINE Alu -19 294 1 1443 184 44 7 chr1 13376116 13376409 -268817255 - AluJo SINE Alu -7 305 1 382 256 78 16 chr1 13377150 13377279 -268816385 + MIR SINE MIR 117 253 -9 2040 120 0 3 chr1 13377614 13377913 -268815751 + AluSp SINE Alu 1 298 -15 1588 128 43 4 chr1 13377929 13378186 -268815478 + AluSg SINE Alu 1 267 -43 1869 127 0 3 chr1 13378308 13378591 -268815073 + AluSg SINE Alu 1 282 -28 1533 153 55 29 chr1 13378760 13379058 -268814606 - AluJb SINE Alu 0 305 1 1768 151 3 50 chr1 13379063 13379381 -268814283 - AluSx SINE Alu -9 303 1 1575 226 14 3 chr1 13379382 13379753 -268813911 - L1MC1 LINE L1 -11 6322 5948 918 204 189 15 chr1 13379770 13380034 -268813630 - L1MC1 LINE L1 -423 5910 5601 190 320 67 40 chr1 13380086 13380161 -268813503 + L2 LINE L2 3169 3245 -27 820 191 7 0 chr1 13380336 13380472 -268813192 + AluSx SINE Alu 6 142 -171 22343 73 0 2 chr1 13380477 13383315 -268810349 + L1PA4 LINE L1 8 2840 -3306 1552 58 0 0 chr1 13383311 13383501 -268810163 - L1PA4 LINE L1 -172 5983 5794 * 821 67 0 0 chr1 13383492 13383596 -268810068 + L1PA4 LINE L1 6013 6116 -39 * 1070 70 0 0 chr1 13383501 13383635 -268810029 + L1PA4 LINE L1 6013 6155 0 * 20730 44 1 24 chr1 13383633 13386970 -268806694 + L1PA4 LINE L1 2827 6150 -5 997 180 0 0 chr1 13386971 13387149 -268806515 + AluSx SINE Alu 135 312 0 21 36 0 0 chr1 13388228 13388256 -268805408 + AT_rich Low_complexity Low_complexity 1 28 0 545 164 0 39 chr1 13390243 13390373 -268803291 + AluSp/q SINE Alu 188 313 0 1450 201 7 3 chr1 13390599 13390897 -268802767 - AluJb SINE Alu 0 312 14 1219 246 63 41 chr1 13390905 13391041 -268802623 - Tigger6 DNA MER2_type -63 1534 1402 1597 163 14 0 chr1 13391041 13391335 -268802329 + AluSx SINE Alu 3 300 -12 1219 246 63 41 chr1 13391335 13391609 -268802055 - Tigger6 DNA MER2_type -195 1402 1115 221 322 188 47 chr1 13393223 13393521 -268800143 - L2 LINE L2 -652 2662 2323 1050 186 24 20 chr1 13393913 13394160 -268799504 + L1MA7 LINE L1 6026 6273 -18 18829 99 3 15 chr1 13394458 13398002 -268795662 + L1PA7 LINE L1 2548 6136 -18 1187 107 4 16 chr1 13398002 13398236 -268795428 + (GAAA)n Simple_repeat Simple_repeat 4 228 0 294 164 0 0 chr1 13398239 13398294 -268795370 + GA-rich Low_complexity Low_complexity 1 55 0 1332 264 43 45 chr1 13398406 13398603 -268795061 + MER41E LTR ERV1 13 209 -303 1973 110 21 0 chr1 13398603 13398921 -268794743 + AluSp SINE Alu 1 324 0 1332 264 43 45 chr1 13398921 13399184 -268794480 + MER41E LTR ERV1 209 474 -38 3071 226 10 48 chr1 13399354 13400277 -268793387 - L1 LINE L1 -1297 6268 5381 939 252 18 3 chr1 13400341 13400681 -268792983 - L1 LINE L1 -3780 3785 3441 5649 230 33 68 chr1 13400684 13402319 -268791345 - MER52A LTR ERV1 -6 1749 51 1270 246 0 0 chr1 13403023 13403311 -268790353 + AluSx SINE Alu 18 305 -7 653 188 0 8 chr1 13403693 13403810 -268789854 + FLAM_C SINE Alu 1 116 -17 21 71 0 0 chr1 13403818 13403860 -268789804 + AT_rich Low_complexity Low_complexity 1 42 0 581 207 4 2 chr1 13407136 13407373 -268786291 + AluSx SINE Alu 3 295 -17 709 244 0 0 chr1 13407392 13407560 -268786104 + AluSx SINE Alu 129 296 -16 1792 147 3 0 chr1 13407633 13407925 -268785739 + AluSq SINE Alu 1 293 -20 26 0 0 0 chr1 13408234 13408260 -268785404 + AT_rich Low_complexity Low_complexity 1 26 0 1516 181 3 3 chr1 13409310 13409592 -268784072 - AluSx SINE Alu -26 286 5 1656 174 17 0 chr1 13410172 13410633 -268783031 + AluY SINE Alu 3 468 0 793 254 0 15 chr1 13410634 13410835 -268782829 + AluJb SINE Alu 16 213 -99 240 35 0 0 chr1 13411930 13411959 -268781705 + (TG)n Simple_repeat Simple_repeat 1 29 0 984 201 32 0 chr1 13412825 13413044 -268780620 + AluSg/x SINE Alu 85 310 -2 1573 172 45 0 chr1 13413573 13413870 -268779794 + AluSc SINE Alu 1 309 0 3392 207 35 53 chr1 13414025 13415011 -268778653 + LTR5 LTR ERVK 1 969 0 27152 159 28 32 chr1 13415013 13419846 -268773818 + HERVK LTR ERVK 3 4815 -2428 250 310 53 41 chr1 13420310 13420555 -268773109 - PABL_B-int LTR ERV1 -4280 2842 2595 239 333 54 16 chr1 13421051 13421180 -268772484 - MIR SINE MIR -12 250 117 317 306 105 39 chr1 13425823 13426052 -268767612 + L1M4 LINE L1 2808 3051 -3095 954 226 52 4 chr1 13427522 13427752 -268765912 + AluJb SINE Alu 44 284 -28 180 353 35 0 chr1 13428363 13428479 -268765185 - MIR SINE MIR -80 182 63 249 278 42 0 chr1 13430209 13430281 -268763383 - L2 LINE L2 -10 3262 3188 1033 243 72 15 chr1 13430347 13430681 -268762983 - Tigger6 DNA MER2_type -37 1560 1208 7790 165 21 68 chr1 13431826 13433187 -268760477 + L1MA4 LINE L1 3643 5066 -1234 2210 127 3 7 chr1 13433187 13433495 -268760169 + AluSc SINE Alu 1 307 -2 7790 165 21 68 chr1 13433495 13434715 -268758949 + L1MA4 LINE L1 5066 6082 -218 2500 69 6 28 chr1 13434715 13435033 -268758631 - AluY SINE Alu 0 311 1 7790 165 21 68 chr1 13435033 13435241 -268758423 + L1MA4 LINE L1 6082 6298 -2 808 200 16 32 chr1 13435286 13435476 -268758188 + MER5A DNA MER1_type 3 189 0 702 216 35 6 chr1 13435876 13436047 -268757617 + MLT1D LTR MaLR 21 196 -309 506 193 180 13 chr1 13436111 13436261 -268757403 + MLT1D LTR MaLR 304 478 -27 447 148 37 0 chr1 13436292 13436373 -268757291 + MLT1D LTR MaLR 422 505 0 676 94 219 16 chr1 13436619 13436747 -268756917 - MER30 DNA MER1_type 0 230 77 183 42 0 0 chr1 13436747 13436771 -268756893 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1456 154 5 0 chr1 13436772 13436993 -268756671 - AluSx SINE Alu -32 280 59 710 86 0 0 chr1 13437093 13437186 -268756478 - AluS SINE Alu -218 94 2 427 329 81 9 chr1 13437188 13437398 -268756266 + L1M4 LINE L1 3727 3951 -2195 545 303 100 26 chr1 13437537 13437768 -268755896 + MIR SINE MIR 15 262 0 240 182 0 148 chr1 13437849 13437880 -268755784 - MER94 DNA DNA -47 87 53 2002 139 0 16 chr1 13437880 13438190 -268755474 + AluSx SINE Alu 1 305 -7 240 182 0 148 chr1 13438190 13438246 -268755418 - MER94 DNA DNA -81 53 13 204 235 0 0 chr1 13438447 13438498 -268755166 + (TA)n Simple_repeat Simple_repeat 1 51 0 267 332 57 42 chr1 13438692 13438885 -268754779 + MER110-int LTR ERV1 2243 2438 -2209 1981 112 42 0 chr1 13438897 13439182 -268754482 - AluSx SINE Alu -14 298 2 2223 123 3 0 chr1 13439624 13439924 -268753740 - AluSp SINE Alu -12 301 1 1725 157 94 135 chr1 13440028 13440569 -268753095 - LTR44 LTR ERV1 0 519 1 571 185 81 77 chr1 13440715 13440937 -268752727 - MER65A LTR ERV1 -12 433 211 3155 187 45 2 chr1 13441072 13441650 -268752014 - LTR26 LTR ERV1 0 603 1 346 64 0 0 chr1 13441850 13441897 -268751767 - AluSg SINE Alu -7 293 247 1481 102 0 0 chr1 13441897 13442084 -268751580 - AluSg SINE Alu -123 187 1 1910 135 28 3 chr1 13442267 13442433 -268751231 - AluSx SINE Alu -16 296 119 189 0 0 0 chr1 13442433 13442454 -268751210 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1910 135 28 3 chr1 13442454 13442576 -268751088 - AluSx SINE Alu -193 119 1 954 108 8 0 chr1 13442577 13442707 -268750957 - AluSq/x SINE Alu -177 136 6 1635 161 0 58 chr1 13443273 13443394 -268750270 + AluJb SINE Alu 5 132 -180 2086 131 0 3 chr1 13443394 13443691 -268749973 - AluSx SINE Alu -16 296 1 1635 161 0 58 chr1 13443691 13443860 -268749804 + AluJb SINE Alu 132 278 -34 423 160 9 114 chr1 13444092 13444208 -268749456 - MER65-int LTR ERV1 -4048 823 728 183 246 0 77 chr1 13444208 13444273 -268749391 - L3b LINE CR1 -105 1478 1419 348 0 0 55 chr1 13444559 13444614 -268749050 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1278 160 0 0 chr1 13444663 13444850 -268748814 - AluSx SINE Alu -125 187 1 802 197 0 0 chr1 13445313 13445450 -268748214 + AluSg/x SINE Alu 138 274 -36 1968 168 7 0 chr1 13445887 13446197 -268747467 - AluSx SINE Alu 0 312 1 1792 133 0 70 chr1 13446558 13446893 -268746771 - AluSg SINE Alu 0 314 1 1918 149 0 20 chr1 13447003 13447299 -268746365 - AluSx SINE Alu -22 290 1 1447 134 0 0 chr1 13447352 13447553 -268746111 - AluSg/x SINE Alu -30 282 82 2203 114 0 13 chr1 13447617 13447916 -268745748 - AluSx SINE Alu -17 295 1 1796 148 13 33 chr1 13448034 13448337 -268745327 + AluJb SINE Alu 1 297 -15 249 211 0 0 chr1 13448337 13448394 -268745270 + GA-rich Low_complexity Low_complexity 1 57 0 832 106 0 0 chr1 13449424 13449528 -268744136 + AluSx SINE Alu 1 104 -209 718 94 0 0 chr1 13449528 13449624 -268744040 - LTR12 LTR ERV1 -4 710 615 253 271 42 25 chr1 13449626 13449744 -268743920 - LTR30 LTR ERV1 -79 643 524 639 137 5 5 chr1 13449831 13449949 -268743715 - LTR12 LTR ERV1 -480 234 3 1561 96 0 0 chr1 13449950 13450149 -268743515 + AluSx SINE Alu 94 292 -18 2358 54 30 20 chr1 13450269 13450444 -268743220 - AluY SINE Alu -12 299 118 369 0 0 0 chr1 13450444 13450485 -268743179 + (TG)n Simple_repeat Simple_repeat 2 42 0 2358 54 30 20 chr1 13450485 13450605 -268743059 - AluY SINE Alu -193 118 1 597 199 23 23 chr1 13451537 13451668 -268741996 + FLAM_C SINE Alu 1 131 -2 2166 124 17 0 chr1 13451689 13451979 -268741685 - AluSq SINE Alu -18 295 1 1707 61 0 14 chr1 13452042 13452254 -268741410 - AluY SINE Alu -102 209 1 2236 120 7 0 chr1 13452738 13453039 -268740625 - AluSx SINE Alu -9 303 1 549 148 0 0 chr1 13453863 13453944 -268739720 - AluSg/x SINE Alu -50 260 180 2297 90 0 43 chr1 13454003 13454326 -268739338 + AluSc SINE Alu 1 309 0 356 256 78 16 chr1 13454582 13454711 -268738953 + MIR SINE MIR 117 253 -9 2397 82 3 0 chr1 13454753 13455056 -268738608 - AluSc SINE Alu -5 304 1 246 105 0 0 chr1 13455478 13455516 -268738148 + Alu SINE Alu 255 292 -7 1455 93 69 5 chr1 13455518 13455734 -268737930 + AluSx SINE Alu 1 230 -82 2356 95 0 10 chr1 13455893 13456197 -268737467 - AluY SINE Alu -10 301 1 1090 173 50 117 chr1 13456199 13456454 -268737210 + MER82 DNA MER2_type 22 250 -403 839 154 23 0 chr1 13456454 13456584 -268737080 - FLAM_C SINE Alu 0 133 1 1090 173 50 117 chr1 13456584 13456669 -268736995 + MER82 DNA MER2_type 250 339 -314 2216 110 7 10 chr1 13456684 13456992 -268736672 - AluSg1 SINE Alu -1 308 2 342 316 45 65 chr1 13457296 13457369 -268736295 - L2 LINE L2 0 3272 3199 1943 158 0 3 chr1 13457369 13457666 -268735998 + AluSx SINE Alu 1 296 -16 2288 113 0 3 chr1 13457666 13457974 -268735690 + AluSx SINE Alu 1 308 -4 342 316 45 65 chr1 13457974 13458054 -268735610 - L2 LINE L2 -71 3201 3121 379 145 0 0 chr1 13458078 13458140 -268735524 + AluSq/x SINE Alu 49 110 -193 413 169 12 0 chr1 13458156 13458239 -268735425 + AluS SINE Alu 228 311 0 2401 100 3 0 chr1 13458298 13458608 -268735056 - AluSp SINE Alu -2 311 1 2218 106 7 3 chr1 13458620 13458921 -268734743 - AluSx SINE Alu -10 302 1 685 219 19 32 chr1 13458964 13459119 -268734545 + MIR SINE MIR 89 241 -21 1034 187 0 0 chr1 13459163 13459329 -268734335 - AluJb SINE Alu -17 295 130 1936 81 0 4 chr1 13460105 13460340 -268733324 - AluY SINE Alu -77 234 1 2177 124 0 3 chr1 13460341 13460647 -268733017 - AluSq SINE Alu -8 305 1 2466 77 0 0 chr1 13460658 13460958 -268732706 - AluY SINE Alu -11 300 1 333 270 97 71 chr1 13461100 13461150 -268732514 + MIR SINE MIR 21 68 -194 2203 122 3 0 chr1 13461150 13461446 -268732218 + AluSx SINE Alu 1 297 -15 333 270 97 71 chr1 13461446 13461591 -268732073 + MIR SINE MIR 68 221 -41 1531 94 30 43 chr1 13461775 13461928 -268731736 - MER30 DNA MER1_type 0 230 80 1421 113 213 17 chr1 13461928 13462189 -268731475 - AluSg1 SINE Alu 0 309 1 1531 94 30 43 chr1 13462189 13462268 -268731396 - MER30 DNA MER1_type -150 80 1 552 274 30 20 chr1 13462342 13462543 -268731121 + MLT1J LTR MaLR 7 209 -302 33 43 0 0 chr1 13462543 13462590 -268731074 + AT_rich Low_complexity Low_complexity 1 47 0 2149 103 0 0 chr1 13462597 13462870 -268730794 - AluSx SINE Alu -30 282 10 791 196 85 88 chr1 13462878 13463184 -268730480 + MLT1J LTR MaLR 207 511 0 2278 118 0 7 chr1 13463218 13463522 -268730142 - AluSx SINE Alu -10 302 1 200 354 31 15 chr1 13463523 13463653 -268730011 + MIR3 SINE MIR 71 202 -6 1375 103 5 0 chr1 13464243 13464428 -268729236 - AluSg/x SINE Alu -6 304 119 1835 159 20 7 chr1 13464459 13464754 -268728910 + AluJb SINE Alu 1 299 -13 291 180 0 16 chr1 13465358 13465419 -268728245 - MIR SINE MIR -68 140 81 969 203 44 58 chr1 13465426 13465719 -268727945 + L1ME1 LINE L1 5798 6117 -61 434 18 18 0 chr1 13465719 13465774 -268727890 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 969 203 44 58 chr1 13465774 13465832 -268727832 + L1ME1 LINE L1 6117 6174 -4 2034 128 10 10 chr1 13465833 13466129 -268727535 + AluJo SINE Alu 1 296 -16 2381 98 3 3 chr1 13466129 13466434 -268727230 + AluSp SINE Alu 1 305 -8 638 219 24 18 chr1 13466608 13466902 -268726762 - MLT1E LTR MaLR -27 566 217 1843 147 7 4 chr1 13467158 13467460 -268726204 - AluJb SINE Alu 0 305 3 2120 109 0 56 chr1 13467467 13467788 -268725876 - AluSx SINE Alu -9 303 1 2150 112 3 3 chr1 13467793 13468123 -268725541 - AluSq SINE Alu 0 330 1 2480 198 74 26 chr1 13468129 13468602 -268725062 - L1MC1 LINE L1 -13 6320 5802 2412 104 0 0 chr1 13468602 13468909 -268724755 - AluSg1 SINE Alu -2 307 1 2480 198 74 26 chr1 13468909 13469122 -268724542 - L1MC1 LINE L1 -531 5802 5601 2306 108 16 0 chr1 13469140 13469447 -268724217 - AluSx SINE Alu 0 312 1 5806 90 16 7 chr1 13469613 13470649 -268723015 - Harlequin LTR ERV1 0 8399 504 1092 120 3 7 chr1 13470647 13470985 -268722679 - Harlequin LTR ERV1 -5156 1740 1363 * 208 275 62 0 chr1 13471507 13471587 -268722077 + MIR SINE MIR 59 143 -119 2222 108 10 0 chr1 13472253 13472549 -268721115 - AluSx SINE Alu -13 299 1 191 326 53 0 chr1 13473103 13473198 -268720466 + L2 LINE L2 3191 3290 -23 398 257 126 14 chr1 13473573 13473787 -268719877 + L2 LINE L2 2844 3081 -232 1389 137 12 32 chr1 13473803 13474051 -268719613 + MLT2B3 LTR ERVL 1 243 -311 2440 62 0 3 chr1 13474054 13474343 -268719321 - AluY SINE Alu -17 294 7 1475 243 136 21 chr1 13474399 13474885 -268718779 - MLT1F LTR MaLR 0 542 1 2171 71 49 0 chr1 13474936 13475203 -268718461 + AluY SINE Alu 21 300 -11 2198 121 0 3 chr1 13475214 13475519 -268718145 + AluSq SINE Alu 1 304 -9 2164 112 34 0 chr1 13475768 13476063 -268717601 - AluSx SINE Alu -7 305 1 1759 95 0 26 chr1 13476319 13476551 -268717113 + AluSg/x SINE Alu 67 292 -18 208 214 18 36 chr1 13476630 13476686 -268716978 - L2 LINE L2 -79 3234 3180 487 312 241 10 chr1 13476689 13476990 -268716674 - L2 LINE L2 0 3313 3083 1731 173 50 0 chr1 13476990 13477267 -268716397 + AluJo SINE Alu 1 291 -21 487 312 241 10 chr1 13477267 13477359 -268716305 - L2 LINE L2 -230 3083 2829 753 282 92 4 chr1 13477673 13477900 -268715764 - MIR SINE MIR 0 262 16 24 0 0 0 chr1 13478540 13478564 -268715100 + AT_rich Low_complexity Low_complexity 1 24 0 813 180 20 65 chr1 13479335 13479499 -268714165 - MER20 DNA MER1_type 0 219 64 2174 130 0 0 chr1 13479499 13479799 -268713865 + AluSq SINE Alu 3 302 -11 813 180 20 65 chr1 13479799 13479834 -268713830 - MER20 DNA MER1_type -155 64 29 2254 105 20 0 chr1 13480159 13480465 -268713199 - AluSx SINE Alu 0 312 1 632 271 52 22 chr1 13480466 13480695 -268712969 - MER115 DNA AcHobo -137 556 321 646 276 112 0 chr1 13480749 13480945 -268712719 - MER115 DNA AcHobo -474 219 2 313 300 42 110 chr1 13481235 13481498 -268712166 + MIR SINE MIR 14 258 -4 279 310 183 21 chr1 13481508 13481650 -268712014 + MIR SINE MIR 20 184 -78 460 256 54 95 chr1 13481700 13481760 -268711904 - L2 LINE L2 -1 3312 3251 2477 93 0 0 chr1 13481760 13482070 -268711594 - AluSg SINE Alu 0 310 1 460 256 54 95 chr1 13482070 13482251 -268711413 - L2 LINE L2 -62 3251 3081 2484 71 0 13 chr1 13482706 13483014 -268710650 - AluY SINE Alu -7 304 1 1280 178 53 41 chr1 13483689 13484101 -268709563 + MLT2B1 LTR ERVL 1 407 -7 444 328 48 0 chr1 13484154 13484340 -268709324 + L2 LINE L2 3106 3300 -13 1795 194 13 27 chr1 13485048 13485420 -268708244 - MLT1A2 LTR MaLR -7 367 1 381 46 6 0 chr1 13486409 13486466 -268707198 + MLT2B3 LTR ERVL 462 554 0 457 320 46 20 chr1 13486482 13486679 -268706985 + L2 LINE L2 3110 3311 -2 392 222 9 0 chr1 13486679 13486787 -268706877 + (TGGG)n Simple_repeat Simple_repeat 4 112 0 2007 91 0 0 chr1 13487664 13487907 -268705757 + AluSq SINE Alu 3 245 -68 846 147 16 0 chr1 13487907 13488036 -268705628 + AluSg/x SINE Alu 175 305 -7 235 274 177 0 chr1 13488220 13488344 -268705320 - L2 LINE L2 0 3313 3168 2316 209 153 0 chr1 13488450 13489019 -268704645 + MER67B LTR ERV1 3 658 -3 1886 169 0 0 chr1 13489451 13489735 -268703929 + AluJb SINE Alu 1 284 -28 1832 151 27 15 chr1 13489802 13490139 -268703525 - L1MB7 LINE L1 -23 6161 5821 27 0 0 0 chr1 13490144 13490171 -268703493 + AT_rich Low_complexity Low_complexity 1 27 0 1022 135 0 0 chr1 13490192 13490333 -268703331 - AluJb SINE Alu -171 141 1 1771 181 24 37 chr1 13490340 13490473 -268703191 - L1MB7 LINE L1 -364 5820 5687 2011 155 0 0 chr1 13490473 13490770 -268702894 - AluJb SINE Alu -15 297 1 1771 181 24 37 chr1 13490770 13491017 -268702647 - L1MB7 LINE L1 -497 5687 5445 1512 154 53 74 chr1 13491991 13492062 -268701602 - MER44D DNA MER2_type -1882 609 538 2476 102 0 3 chr1 13492062 13492375 -268701289 + AluSx SINE Alu 1 312 0 1512 154 53 74 chr1 13492375 13492641 -268701023 - MER44D DNA MER2_type -1953 538 9 643 36 12 0 chr1 13492836 13492920 -268700744 - AluY SINE Alu -16 295 211 338 125 36 0 chr1 13492923 13492979 -268700685 + MLT1E1 LTR MaLR 4 61 -593 259 303 0 22 chr1 13493081 13493170 -268700494 - L1MB7 LINE L1 -2387 5421 5335 390 305 134 0 chr1 13493286 13493450 -268700214 + L1ME LINE L1 5630 5815 -306 392 182 159 102 chr1 13493741 13493917 -268699747 - MIR3 SINE MIR -3 205 20 2483 87 0 6 chr1 13494511 13494822 -268698842 - AluSx SINE Alu -3 309 1 262 339 9 0 chr1 13494861 13494970 -268698694 + (CCA)n Simple_repeat Simple_repeat 2 111 0 765 227 45 0 chr1 13495444 13495620 -268698044 + MER20 DNA MER1_type 1 184 -35 1338 141 5 18 chr1 13495690 13495910 -268697754 - AluJb SINE Alu -11 301 85 288 151 0 82 chr1 13495944 13496017 -268697647 + L1MB3 LINE L1 6084 6150 -33 2385 107 0 0 chr1 13496029 13496339 -268697325 - AluSx SINE Alu -2 310 1 1832 175 21 13 chr1 13496341 13496724 -268696940 - L1MB3 LINE L1 -42 6141 5756 2237 120 0 3 chr1 13496782 13497082 -268696582 + AluSx SINE Alu 1 299 -13 1502 193 179 24 chr1 13497833 13498146 -268695518 + MLT1D LTR MaLR 22 418 -87 2217 126 0 0 chr1 13498146 13498439 -268695225 + AluSg SINE Alu 1 293 -17 1502 193 179 24 chr1 13498439 13498544 -268695120 + MLT1D LTR MaLR 418 505 0 238 313 0 0 chr1 13498547 13498614 -268695050 - MIR SINE MIR -112 96 30 574 330 51 9 chr1 13498793 13499008 -268694656 - MIR SINE MIR -34 228 5 392 321 36 7 chr1 13499055 13499195 -268694469 + MIR3 SINE MIR 30 173 -35 766 303 88 14 chr1 13500009 13500306 -268693358 - L3 LINE CR1 -57 1520 1202 1785 146 7 28 chr1 13500547 13500835 -268692829 - AluJo SINE Alu -30 282 1 924 330 29 10 chr1 13501002 13501586 -268692078 - L2 LINE L2 0 3313 2712 230 244 98 12 chr1 13501863 13501945 -268691719 + MIR SINE MIR 47 135 -127 745 203 33 47 chr1 13501972 13502060 -268691604 + Charlie5 DNA MER1_type 2365 2453 -132 2093 99 54 7 chr1 13502060 13502354 -268691310 + AluSp SINE Alu 1 308 -5 745 203 33 47 chr1 13502354 13502477 -268691187 + Charlie5 DNA MER1_type 2453 2573 -12 228 35 0 0 chr1 13502597 13502626 -268691038 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2318 109 0 3 chr1 13502716 13503019 -268690645 + AluSg SINE Alu 1 302 -8 830 200 46 19 chr1 13503053 13503302 -268690362 - MLT1E LTR MaLR -49 544 258 235 338 76 55 chr1 13504212 13504357 -268689307 + L2 LINE L2 3105 3252 -20 2093 106 29 0 chr1 13504366 13504679 -268688985 - AluSx SINE Alu 0 321 1 233 75 25 0 chr1 13504875 13504915 -268688749 + (TC)n Simple_repeat Simple_repeat 2 42 0 2464 78 3 10 chr1 13505109 13505416 -268688248 + AluSp SINE Alu 1 305 -8 2567 56 3 3 chr1 13505982 13506285 -268687379 + AluY SINE Alu 1 303 -8 2424 43 0 46 chr1 13506566 13506871 -268686793 + AluY SINE Alu 1 291 -20 778 138 15 0 chr1 13507220 13507350 -268686314 - FLAM_C SINE Alu -1 132 1 464 183 39 0 chr1 13507457 13507561 -268686103 - L1MB7 LINE L1 -303 5881 5774 1858 122 34 8 chr1 13507750 13508012 -268685652 + AluSg SINE Alu 11 279 -31 427 255 159 36 chr1 13508821 13509250 -268684414 - L2 LINE L2 -97 3216 2737 2494 87 0 3 chr1 13509699 13510010 -268683654 - AluSx SINE Alu -2 310 1 519 299 153 26 chr1 13510679 13510801 -268682863 + L1ME4a LINE L1 5379 5484 -637 2383 108 0 0 chr1 13510801 13511108 -268682556 + AluSx SINE Alu 1 307 -5 519 299 153 26 chr1 13511108 13511206 -268682458 + L1ME4a LINE L1 5484 5568 -553 2187 117 0 7 chr1 13511206 13511504 -268682160 + AluSx SINE Alu 3 298 -14 519 299 153 26 chr1 13511504 13511937 -268681727 + L1ME4a LINE L1 5568 6116 -5 205 397 32 0 chr1 13512967 13513093 -268680571 - MIR3 SINE MIR -6 202 73 462 229 22 89 chr1 13513122 13513301 -268680363 - MER5A DNA MER1_type -20 169 3 351 269 11 0 chr1 13513534 13513627 -268680037 + MIR SINE MIR 24 117 -91 725 256 121 0 chr1 13513660 13513867 -268679797 - MIR SINE MIR -10 252 21 404 262 70 58 chr1 13513928 13514100 -268679564 - MIR SINE MIR -10 252 79 275 357 62 27 chr1 13514456 13514645 -268679019 - MIR SINE MIR -56 206 20 * 429 244 72 23 chr1 13514641 13514790 -268678874 - MIR3 SINE MIR -37 171 16 30 77 0 0 chr1 13516810 13516875 -268676789 + GC_rich Low_complexity Low_complexity 1 65 0 240 278 29 23 chr1 13516904 13517077 -268676587 + (CGGGG)n Simple_repeat Simple_repeat 1 174 0 263 340 71 0 chr1 13517702 13517843 -268675821 + MIR SINE MIR 46 196 -66 250 272 65 33 chr1 13518952 13519044 -268674620 + MIR SINE MIR 24 118 -90 218 341 0 33 chr1 13519739 13519830 -268673834 - MIR3 SINE MIR -114 94 7 555 245 57 25 chr1 13520863 13521022 -268672642 + MIR SINE MIR 87 250 -12 458 303 76 20 chr1 13521640 13521838 -268671826 + L2 LINE L2 2550 2758 -556 1107 216 80 38 chr1 13521840 13522347 -268671317 + MLT1E LTR MaLR 2 593 0 349 355 49 47 chr1 13522379 13522805 -268670859 + L2 LINE L2 2804 3230 -83 1804 164 0 35 chr1 13522807 13523117 -268670547 - AluJb SINE Alu -8 304 6 563 324 34 10 chr1 13523818 13524022 -268669642 + MIR SINE MIR 17 225 -37 182 282 105 89 chr1 13524087 13524211 -268669453 - L2 LINE L2 -11 3261 3136 240 367 51 0 chr1 13524645 13524743 -268668921 + L2 LINE L2 3170 3272 0 1145 151 0 57 chr1 13525962 13526154 -268667510 + AluY SINE Alu 2 182 -129 1556 187 67 36 chr1 13526255 13526508 -268667156 - MLT1C LTR MaLR -98 369 100 2346 105 0 7 chr1 13526508 13526812 -268666852 - AluSx SINE Alu -10 302 1 1556 187 67 36 chr1 13526812 13526916 -268666748 - MLT1C LTR MaLR -367 100 1 543 258 65 21 chr1 13526966 13527152 -268666512 - LTR33 LTR ERVL -7 514 321 3324 125 32 28 chr1 13527264 13527382 -268666282 + MER4A LTR ERV1 1 117 -483 2314 88 0 49 chr1 13527382 13527710 -268665954 + AluSx SINE Alu 1 312 0 3324 125 32 28 chr1 13527710 13528189 -268665475 + MER4A LTR ERV1 117 600 0 1135 221 22 44 chr1 13528246 13528563 -268665101 + L1MC2 LINE L1 5914 6223 -121 200 228 0 54 chr1 13528563 13528655 -268665009 + (TA)n Simple_repeat Simple_repeat 2 88 0 550 169 107 9 chr1 13528655 13528814 -268664850 + L1MC2 LINE L1 6191 7777 -8 1514 162 15 99 chr1 13528814 13529001 -268664663 - AluJo SINE Alu -6 306 158 203 0 37 0 chr1 13529001 13529028 -268664636 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1514 162 15 99 chr1 13529028 13529174 -268664490 - AluJo SINE Alu -154 158 1 1004 109 95 0 chr1 13529176 13529345 -268664319 - AluY SINE Alu 0 311 133 2050 115 0 48 chr1 13529345 13529657 -268664007 - AluY SINE Alu -14 297 1 189 0 0 0 chr1 13529675 13529696 -268663968 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2247 74 7 7 chr1 13530661 13530985 -268662679 - AluSx SINE Alu 0 324 1 229 333 56 0 chr1 13531105 13531213 -268662451 - MIR SINE MIR -57 151 38 719 487 88 0 chr1 13531856 13532147 -268661517 + AluSx SINE Alu 1 314 0 514 226 203 0 chr1 13532153 13532330 -268661334 - MIR SINE MIR -16 246 34 412 278 0 35 chr1 13532326 13532441 -268661223 - L2 LINE L2 -1 3312 3202 * 2112 154 0 0 chr1 13532518 13532829 -268660835 - AluSx SINE Alu -1 311 1 236 200 20 0 chr1 13533174 13533224 -268660440 - MLT1L LTR MaLR -562 53 3 2425 94 0 0 chr1 13533683 13533982 -268659682 + AluSg SINE Alu 3 301 -9 242 304 10 111 chr1 13534154 13534361 -268659303 - L2 LINE L2 -190 3082 2897 203 250 54 18 chr1 13534402 13534458 -268659206 - MIR SINE MIR -133 75 18 417 218 191 9 chr1 13535479 13535589 -268658075 + MIR SINE MIR 20 149 -59 382 305 134 0 chr1 13535945 13536109 -268657555 - L1ME LINE L1 -306 5815 5630 573 260 120 14 chr1 13536222 13536459 -268657205 + L1ME4a LINE L1 5334 5545 -576 2151 99 0 10 chr1 13536459 13536762 -268656902 + AluSg SINE Alu 1 300 -10 573 260 120 14 chr1 13536762 13536909 -268656755 + L1ME4a LINE L1 5545 5860 -261 318 26 0 0 chr1 13536965 13537004 -268656660 + (CA)n Simple_repeat Simple_repeat 2 40 0 508 277 0 8 chr1 13537799 13537929 -268655735 - LTR67 LTR ERVL -3 554 426 1993 141 0 0 chr1 13538141 13538438 -268655226 + AluJb SINE Alu 6 302 -10 990 232 48 71 chr1 13538568 13538860 -268654804 + MLT1C LTR MaLR 6 288 -179 1699 74 0 26 chr1 13538860 13539090 -268654574 + AluSg/x SINE Alu 71 294 -16 990 232 48 71 chr1 13539090 13539176 -268654488 + MLT1C LTR MaLR 288 375 -92 2139 94 0 22 chr1 13539389 13539707 -268653957 - AluY SINE Alu 0 311 1 183 186 0 0 chr1 13539748 13539791 -268653873 + CT-rich Low_complexity Low_complexity 2 44 0 998 200 6 2 chr1 13539791 13540023 -268653641 + MLT1B LTR MaLR 173 386 0 198 191 0 0 chr1 13540148 13540195 -268653469 + GA-rich Low_complexity Low_complexity 3 49 0 1755 166 0 10 chr1 13540305 13540612 -268653052 + AluSx SINE Alu 1 304 -8 657 293 27 22 chr1 13540815 13541040 -268652624 - MIR SINE MIR -6 256 31 2130 92 9 28 chr1 13541142 13541459 -268652205 - AluSx SINE Alu -1 311 1 288 137 0 0 chr1 13541929 13541980 -268651684 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 401 231 320 10 chr1 13542030 13542433 -268651231 + L2 LINE L2 2721 3262 -51 631 317 49 8 chr1 13542740 13542986 -268650678 - MIR SINE MIR -6 256 1 2245 93 3 0 chr1 13543007 13543309 -268650355 + AluSp SINE Alu 1 303 -10 2333 85 3 0 chr1 13543310 13543617 -268650047 + AluY SINE Alu 1 308 -3 424 251 86 74 chr1 13543705 13543880 -268649784 + L1MEd LINE L1 231 407 -5712 1729 94 45 0 chr1 13543946 13544191 -268649473 - AluSx SINE Alu -56 256 1 8138 204 24 36 chr1 13544401 13547280 -268646384 - HERVH LTR ERV1 -3792 2737 1 846 157 112 60 chr1 13547280 13547667 -268645997 - LTR7 LTR ERV1 0 450 1 387 238 117 0 chr1 13547860 13548004 -268645660 - LTR10A-int LTR ERV1 -7420 365 288 1048 204 43 132 chr1 13548010 13548361 -268645303 - LTR10A-int LTR ERV1 -6335 314 1 1695 166 181 55 chr1 13548370 13548857 -268644807 - LTR10A LTR ERV1 -61 548 1 441 125 0 12 chr1 13548857 13548936 -268644728 + Tigger7 DNA MER2_type 2333 2410 -77 372 191 181 29 chr1 13548953 13548978 -268644686 + Tigger7 DNA MER2_type 2367 2387 -100 1990 147 26 18 chr1 13548978 13549250 -268644414 + MER2 DNA MER2_type 2 279 -65 1623 151 24 14 chr1 13549250 13549542 -268644122 - AluSx SINE Alu -17 295 1 1990 147 26 18 chr1 13549542 13549609 -268644055 + MER2 DNA MER2_type 279 344 0 372 191 181 29 chr1 13549609 13549688 -268643976 + Tigger7 DNA MER2_type 2387 2487 0 937 218 96 102 chr1 13549690 13550213 -268643451 + Charlie2 DNA MER1_type 1833 2354 -508 1754 148 10 13 chr1 13550213 13550511 -268643153 + AluSp SINE Alu 1 297 -16 937 218 96 102 chr1 13550511 13550547 -268643117 + Charlie2 DNA MER1_type 2354 2389 -473 581 300 86 9 chr1 13550699 13550919 -268642745 - MIR SINE MIR 0 262 26 2140 110 7 0 chr1 13550932 13551242 -268642422 - AluSp SINE Alu -1 312 1 2320 83 0 3 chr1 13552902 13553215 -268640449 - AluSp SINE Alu -1 312 1 247 250 0 0 chr1 13553603 13553667 -268639997 + Charlie2 DNA MER1_type 2422 2485 -377 2228 85 0 3 chr1 13553671 13553965 -268639699 + AluSg SINE Alu 1 293 -17 764 186 9 95 chr1 13554031 13554153 -268639511 + Charlie2 DNA MER1_type 2652 2746 -116 2087 91 3 10 chr1 13554153 13554450 -268639214 - AluSg SINE Alu -15 295 1 764 186 9 95 chr1 13554450 13554558 -268639106 + Charlie2 DNA MER1_type 2746 2862 0 293 231 264 33 chr1 13554772 13554893 -268638771 - MIR SINE MIR -110 152 4 882 300 63 31 chr1 13554896 13555534 -268638130 - L1M4 LINE L1 -715 5446 4786 2228 57 0 23 chr1 13555534 13555833 -268637831 - AluY SINE Alu -18 293 2 882 300 63 31 chr1 13555833 13555907 -268637757 - L1M4 LINE L1 -1375 4786 4716 282 236 0 14 chr1 13555936 13555980 -268637684 - L1M4 LINE L1 -1796 4333 4289 1678 135 0 12 chr1 13555980 13556232 -268637432 - AluSg SINE Alu -16 294 46 282 236 0 14 chr1 13556232 13556259 -268637405 - L1M4 LINE L1 -1840 4289 4263 1289 190 130 11 chr1 13556260 13556529 -268637135 - AluJb SINE Alu -1 301 1 230 293 68 63 chr1 13556625 13557007 -268636657 - L1M4 LINE L1 -2579 3550 3167 286 137 20 0 chr1 13557007 13557058 -268636606 - MIR SINE MIR -28 234 183 780 234 78 92 chr1 13557095 13557608 -268636056 - L1M4 LINE L1 -5043 1076 571 227 352 32 0 chr1 13557810 13557935 -268635729 - L1M4 LINE L1 -5985 134 6 705 188 161 61 chr1 13557935 13558196 -268635468 - MER113 DNA MER1_type? -116 405 119 384 303 0 0 chr1 13558233 13558322 -268635342 - L1MC4 LINE L1 -1339 6703 6615 1841 172 0 0 chr1 13558326 13558623 -268635041 + AluJo SINE Alu 1 297 -15 1269 219 130 33 chr1 13559027 13559388 -268634276 + MSTD LTR MaLR 1 396 0 2320 80 0 3 chr1 13559593 13559894 -268633770 - AluSg SINE Alu -10 300 1 1812 70 117 0 chr1 13560375 13560658 -268633006 - AluSp SINE Alu 0 313 1 707 280 52 13 chr1 13560974 13561206 -268632458 + MIR SINE MIR 7 247 -15 1995 45 53 0 chr1 13561716 13561993 -268631671 - AluY SINE Alu 0 310 21 1386 259 130 14 chr1 13562052 13562538 -268631126 + MLT1F LTR MaLR 1 542 0 2238 99 0 0 chr1 13562589 13562893 -268630771 + AluY SINE Alu 2 305 -6 533 263 31 38 chr1 13563008 13563168 -268630496 + MIR SINE MIR 48 206 -56 1876 125 0 0 chr1 13563398 13563662 -268630002 - AluSx SINE Alu -48 264 1 2080 209 128 64 chr1 13563766 13564331 -268629333 + MER63D DNA MER1_type 1 529 -532 2186 125 0 0 chr1 13564331 13564643 -268629021 - AluSx SINE Alu 0 312 1 2080 209 128 64 chr1 13564643 13564828 -268628836 + MER63D DNA MER1_type 529 701 -360 491 15 0 31 chr1 13564828 13564893 -268628771 + (CTATT)n Simple_repeat Simple_repeat 3 65 0 2080 209 128 64 chr1 13564893 13565003 -268628661 + MER63D DNA MER1_type 701 917 -144 2272 104 0 0 chr1 13565030 13565337 -268628327 - AluSx SINE Alu -5 307 1 2425 153 31 27 chr1 13565343 13565648 -268628016 - L1MB5 LINE L1 -37 6137 5828 1386 157 33 62 chr1 13565648 13565953 -268627711 - AluJo SINE Alu -16 296 1 2425 153 31 27 chr1 13565953 13566093 -268627571 - L1MB5 LINE L1 -346 5828 5690 748 182 42 0 chr1 13566093 13566236 -268627428 + MER63D DNA MER1_type 909 1057 -4 465 289 30 24 chr1 13566261 13566427 -268627237 + MIR3 SINE MIR 13 179 -29 722 232 49 22 chr1 13566583 13566807 -268626857 + MER31A LTR ERV1 256 485 0 1821 101 87 7 chr1 13567118 13567406 -268626258 - AluSx SINE Alu -1 311 1 290 71 24 0 chr1 13567430 13567472 -268626192 - MER21B LTR ERV1 -202 661 619 369 335 63 6 chr1 13568568 13568726 -268624938 - MIR SINE MIR -49 213 47 2388 90 0 0 chr1 13569170 13569481 -268624183 - AluSp SINE Alu 0 313 3 1007 83 0 0 chr1 13569485 13569617 -268624047 - AluSp SINE Alu -181 132 1 1674 223 74 74 chr1 13569657 13570096 -268623568 + MLT1F LTR MaLR 1 442 -100 2171 106 0 3 chr1 13570096 13570399 -268623265 - AluSq SINE Alu -11 302 1 1674 223 74 74 chr1 13570399 13570501 -268623163 + MLT1F LTR MaLR 441 542 0 317 280 64 13 chr1 13570657 13570782 -268622882 - MER91B DNA MER1_type -1 139 3 331 296 33 100 chr1 13571004 13571244 -268622420 + MIR SINE MIR 6 229 -33 597 225 0 9 chr1 13571253 13571364 -268622300 - FLAM_C SINE Alu -28 115 6 183 300 0 67 chr1 13571379 13571469 -268622195 + L2 LINE L2 3229 3312 -1 1716 155 3 19 chr1 13572206 13572522 -268621142 + AluJo SINE Alu 1 311 -1 256 292 107 28 chr1 13572955 13573171 -268620493 - L2 LINE L2 -129 3184 2952 386 229 52 0 chr1 13573172 13573268 -268620396 - MER45A DNA AcHobo -1 177 77 258 262 210 39 chr1 13573282 13573511 -268620153 - L2 LINE L2 -341 2973 2706 798 164 0 34 chr1 13573511 13573657 -268620007 - FLAM_C SINE Alu -1 142 2 1987 88 88 3 chr1 13573667 13573951 -268619713 - AluSq SINE Alu -5 308 1 2212 76 10 3 chr1 13573951 13574241 -268619423 - AluSc SINE Alu -17 292 1 186 333 11 11 chr1 13574244 13574337 -268619327 - L2 LINE L2 -601 2713 2621 2043 123 0 13 chr1 13575703 13576005 -268617659 - AluSq SINE Alu -15 298 1 12115 98 4 1 chr1 13576272 13577903 -268615761 + HERVH LTR ERV1 4380 6016 -1697 3356 118 14 44 chr1 13577896 13578470 -268615194 + HERVH LTR ERV1 7157 7713 0 * 1298 168 207 44 chr1 13578470 13578857 -268614807 + LTR7 LTR ERV1 1 450 0 212 186 17 0 chr1 13579106 13579165 -268614499 + GA-rich Low_complexity Low_complexity 2 61 0 516 203 32 0 chr1 13579215 13579444 -268614220 + GA-rich Low_complexity Low_complexity 1 236 0 5627 94 19 41 chr1 13579450 13579883 -268613781 + HERV17 LTR ERV1 704 1145 -5751 2286 66 0 3 chr1 13579883 13580172 -268613492 + AluY SINE Alu 1 288 -23 5627 94 19 41 chr1 13580172 13580817 -268612847 + HERV17 LTR ERV1 1145 1718 -5178 267 274 167 0 chr1 13580817 13580901 -268612763 - LTR8 LTR ERV1 -434 257 160 11824 156 12 19 chr1 13580908 13584082 -268609582 + Harlequin LTR ERV1 1804 6647 -2 1843 142 127 43 chr1 13584126 13584543 -268609121 + LTR10A LTR ERV1 97 548 -61 1836 137 42 118 chr1 13584556 13584903 -268608761 - MER44D DNA MER2_type -2033 454 90 1437 163 41 41 chr1 13584903 13585198 -268608466 - AluJb SINE Alu -17 295 1 1836 137 42 118 chr1 13585198 13585281 -268608383 - MER44D DNA MER2_type -2397 90 2 670 235 50 0 chr1 13585284 13585463 -268608201 - Charlie2a DNA MER1_type -1033 1829 1642 2247 86 16 0 chr1 13585467 13585771 -268607893 - AluSp SINE Alu 0 313 5 552 248 0 0 chr1 13585785 13585906 -268607758 - FLAM_A SINE Alu -10 132 12 2184 45 0 31 chr1 13585921 13586259 -268607405 - AluY SINE Alu 0 329 1 478 176 155 7 chr1 13586272 13586414 -268607250 - Charlie2a DNA MER1_type -1214 1648 1486 1721 161 10 0 chr1 13586419 13586711 -268606953 - AluJo SINE Alu -17 295 1 1249 256 141 44 chr1 13586797 13587216 -268606448 - Charlie2b DNA MER1_type -2112 670 180 2110 118 3 0 chr1 13587216 13587520 -268606144 - AluSx SINE Alu -7 305 1 1249 256 141 44 chr1 13587520 13587667 -268605997 - Charlie2b DNA MER1_type -2602 180 49 410 326 41 20 chr1 13587715 13587911 -268605753 + L2 LINE L2 3113 3312 -1 2201 76 0 0 chr1 13589670 13589973 -268603691 + AluSc SINE Alu 5 307 0 266 316 0 0 chr1 13590691 13590770 -268602894 + Charlie2 DNA MER1_type 46 124 -2738 860 140 7 0 chr1 13590781 13590917 -268602747 - FLAM_C SINE Alu -6 137 1 2396 69 3 0 chr1 13590923 13591227 -268602437 - AluSp SINE Alu -8 305 1 274 167 24 119 chr1 13591289 13591373 -268602291 + Charlie2 DNA MER1_type 204 279 -2503 2148 201 66 0 chr1 13591440 13591882 -268601782 - LTR51 LTR ERV1 0 671 201 23 33 0 0 chr1 13591991 13592021 -268601643 + AT_rich Low_complexity Low_complexity 1 30 0 1506 183 4 15 chr1 13592026 13592299 -268601365 - AluJo SINE Alu -35 277 8 868 142 41 41 chr1 13592704 13592873 -268600791 + MER5A DNA MER1_type 6 174 -15 228 234 156 0 chr1 13593855 13593919 -268599745 + MER5A DNA MER1_type 16 89 -100 219 229 16 84 chr1 13594043 13594126 -268599538 - MER5A DNA MER1_type -72 106 29 44 35 0 0 chr1 13594871 13594929 -268598735 + AT_rich Low_complexity Low_complexity 1 58 0 370 273 87 31 chr1 13596304 13596465 -268597199 + L2 LINE L2 3140 3309 -4 180 0 0 0 chr1 13598119 13598139 -268595525 + (A)n Simple_repeat Simple_repeat 1 20 0 1854 116 56 0 chr1 13598141 13598426 -268595238 + AluSg SINE Alu 1 301 -9 195 42 0 0 chr1 13599486 13599510 -268594154 + (CA)n Simple_repeat Simple_repeat 2 25 0 302 170 64 64 chr1 13599920 13600014 -268593650 - L1MCa LINE L1 -4355 2071 1978 28 0 0 0 chr1 13600016 13600044 -268593620 + AT_rich Low_complexity Low_complexity 1 28 0 1749 131 51 0 chr1 13600047 13600322 -268593342 - AluJb SINE Alu -23 289 1 272 276 81 11 chr1 13600344 13600431 -268593233 - L2 LINE L2 -8 3264 3172 408 321 93 0 chr1 13600831 13601068 -268592596 - MIR SINE MIR 0 262 4 240 35 0 0 chr1 13601176 13601205 -268592459 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1942 110 0 0 chr1 13601205 13601478 -268592186 - AluSx SINE Alu -32 280 8 1742 154 26 3 chr1 13601667 13601972 -268591692 - AluSx SINE Alu 0 312 1 349 283 168 0 chr1 13602448 13602561 -268591103 - L2 LINE L2 -3 3310 3179 2076 97 3 13 chr1 13602667 13602967 -268590697 - AluSc SINE Alu -12 297 1 2028 109 7 0 chr1 13603029 13603314 -268590350 - AluSx SINE Alu 0 312 26 285 327 20 65 chr1 13603331 13603484 -268590180 + L2 LINE L2 3164 3309 -4 2015 119 10 0 chr1 13604027 13604320 -268589344 - AluSq SINE Alu -17 296 1 1117 206 61 4 chr1 13604341 13604588 -268589076 - MER31B LTR ERV1 0 466 206 1772 167 0 0 chr1 13605018 13605312 -268588352 - AluSx SINE Alu -18 294 1 2072 68 0 8 chr1 13605729 13605995 -268587669 + AluY SINE Alu 30 293 -18 1821 107 4 22 chr1 13606251 13606523 -268587141 - AluSx SINE Alu -45 267 1 816 165 0 0 chr1 13606553 13606674 -268586990 + FLAM_C SINE Alu 2 122 -21 26 0 0 0 chr1 13606674 13606700 -268586964 + AT_rich Low_complexity Low_complexity 1 26 0 198 171 0 0 chr1 13606727 13606768 -268586896 + GA-rich Low_complexity Low_complexity 4 44 0 1888 119 0 4 chr1 13606790 13607059 -268586605 + AluSq SINE Alu 35 302 -11 1145 136 0 0 chr1 13607248 13607417 -268586247 - AluSg/x SINE Alu -15 297 129 208 300 0 0 chr1 13607517 13607557 -268586107 + C-rich Low_complexity Low_complexity 1 40 0 192 200 0 0 chr1 13607603 13607643 -268586021 + (TG)n Simple_repeat Simple_repeat 1 40 0 2156 106 0 0 chr1 13609026 13609318 -268584346 - AluSc SINE Alu -17 292 1 1742 133 48 48 chr1 13609407 13609701 -268583963 - AluSq SINE Alu -19 294 1 871 163 0 68 chr1 13609918 13610108 -268583556 + FRAM SINE Alu 1 176 0 23 33 0 0 chr1 13610768 13610798 -268582866 + AT_rich Low_complexity Low_complexity 1 30 0 473 161 12 0 chr1 13610860 13610941 -268582723 - MER6B DNA MER2_type -1 209 128 * 695 171 0 0 chr1 13610911 13611022 -268582642 - MER6B DNA MER2_type -165 111 1 225 161 247 25 chr1 13611083 13611164 -268582500 - MER5C DNA MER1_type 0 324 226 326 186 71 106 chr1 13611184 13611220 -268582444 - MER5C DNA MER1_type -200 124 88 2224 100 0 0 chr1 13611220 13611521 -268582143 + AluSq SINE Alu 1 301 -12 326 186 71 106 chr1 13611521 13611597 -268582067 - MER5C DNA MER1_type -236 88 16 293 347 140 0 chr1 13611786 13611979 -268581685 + L2 LINE L2 2815 3034 -279 1543 162 79 7 chr1 13612010 13612301 -268581363 - LTR10B LTR ERV1 0 505 176 1005 192 49 5 chr1 13612397 13612600 -268581064 + MER58A DNA MER1_type 5 216 -8 414 260 36 68 chr1 13612633 13612825 -268580839 + L2 LINE L2 3111 3296 -17 2358 104 34 3 chr1 13612826 13613182 -268580482 - L1MB2 LINE L1 -2 6169 5803 2133 98 10 0 chr1 13613182 13613479 -268580185 + AluSp SINE Alu 1 300 -13 430 198 9 9 chr1 13613619 13613725 -268579939 + AluSp/q SINE Alu 206 311 -2 698 207 30 7 chr1 13613725 13613889 -268579775 - L1MB2 LINE L1 -357 5814 5653 2320 75 0 0 chr1 13614572 13614880 -268578784 + AluY SINE Alu 2 309 -2 2623 151 36 4 chr1 13614901 13615378 -268578286 + L1MB3 LINE L1 5684 6175 -8 252 213 66 0 chr1 13616697 13616758 -268576906 - MLT1J LTR MaLR 0 511 447 180 0 0 0 chr1 13617507 13617527 -268576137 + (T)n Simple_repeat Simple_repeat 1 20 0 1027 134 114 124 chr1 13618139 13618437 -268575227 + AluJo SINE Alu 2 296 -6 2117 104 10 7 chr1 13618912 13619220 -268574444 - AluSc SINE Alu 0 309 1 2675 97 0 0 chr1 13619848 13620197 -268573467 + HSMAR1 DNA Mariner 938 1286 -1 1379 114 92 13 chr1 13620197 13620425 -268573239 + MSTB1 LTR MaLR 187 432 0 638 241 70 26 chr1 13620564 13620792 -268572872 - MLT1L LTR MaLR -229 386 149 399 265 55 107 chr1 13621757 13622100 -268571564 + L2 LINE L2 2749 3066 -247 1062 195 67 158 chr1 13622290 13622432 -268571232 + MLT1A1 LTR MaLR 1 154 -211 2464 68 0 0 chr1 13622432 13622741 -268570923 - AluY SINE Alu -2 309 1 1062 195 67 158 chr1 13622741 13623034 -268570630 + MLT1A1 LTR MaLR 154 365 0 353 281 0 0 chr1 13623168 13623250 -268570414 + L2 LINE L2 3232 3313 0 181 269 74 56 chr1 13623609 13623717 -268569947 + L2 LINE L2 3149 3258 -55 2652 222 2 14 chr1 13623718 13624226 -268569438 - MLT1F LTR MaLR -15 527 26 1195 299 32 44 chr1 13624287 13624864 -268568800 + L2 LINE L2 2709 3276 -37 1666 136 103 81 chr1 13624864 13625283 -268568381 + MSTA LTR MaLR 1 428 0 1195 299 32 44 chr1 13625283 13625321 -268568343 + L2 LINE L2 3276 3313 0 420 193 8 126 chr1 13625367 13625435 -268568229 + MER5C DNA MER1_type 20 70 -254 2274 94 0 0 chr1 13625435 13625732 -268567932 + AluSq SINE Alu 1 297 -16 420 193 8 126 chr1 13625732 13625782 -268567882 + MER5C DNA MER1_type 70 124 -200 1949 144 0 7 chr1 13626070 13626375 -268567289 - AluJb SINE Alu -9 303 1 7797 79 5 41 chr1 13626500 13627612 -268566052 + MER11C LTR ERVK 1 1071 0 375 181 0 36 chr1 13627636 13627719 -268565945 + MER116 DNA Mariner 1 80 0 997 189 15 5 chr1 13627791 13627987 -268565677 + AluJb SINE Alu 87 284 -28 1058 132 0 0 chr1 13628027 13628186 -268565478 - FRAM SINE Alu -21 155 1 2274 83 0 0 chr1 13628830 13629119 -268564545 - AluSg SINE Alu -17 293 5 518 260 85 25 chr1 13629895 13630249 -268563415 + L1M4 LINE L1 3092 3466 -2680 669 173 9 0 chr1 13630342 13630452 -268563212 + FLAM_C SINE Alu 11 121 -22 2196 83 10 0 chr1 13631882 13632171 -268561493 + AluSc SINE Alu 1 292 -17 833 276 171 27 chr1 13632356 13632918 -268560746 - L1M4 LINE L1 -1979 4167 3525 1284 69 0 98 chr1 13633053 13633256 -268560408 + Charlie3 DNA MER1_type 2524 2706 -4 * 1329 165 135 76 chr1 13633254 13633535 -268560129 - MLT1C LTR MaLR -46 421 109 927 83 0 30 chr1 13633535 13633668 -268559996 - FLAM_C SINE Alu 0 133 5 1329 165 135 76 chr1 13633668 13633779 -268559885 - MLT1C LTR MaLR -358 109 6 1787 135 45 0 chr1 13633897 13634186 -268559478 - AluJb SINE Alu -10 302 1 2285 104 0 3 chr1 13634798 13635097 -268558567 + AluSg SINE Alu 6 303 -7 3991 181 40 12 chr1 13635227 13635695 -268557969 - L1MB3 LINE L1 -155 6028 5574 589 216 9 9 chr1 13635695 13635833 -268557831 - FLAM_A SINE Alu 0 139 2 3991 181 40 12 chr1 13635833 13636534 -268557130 - L1MB3 LINE L1 -609 5574 4822 304 296 43 0 chr1 13637591 13637706 -268555958 + MIR3 SINE MIR 82 201 -7 266 256 44 7 chr1 13638091 13638228 -268555436 + (TA)n Simple_repeat Simple_repeat 1 142 0 516 120 91 28 chr1 13639016 13639145 -268554519 + MSTA LTR MaLR 211 428 0 210 158 0 0 chr1 13639449 13639487 -268554177 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 3014 114 7 14 chr1 13639554 13639991 -268553673 + MER57B LTR ERV1 1 434 0 450 223 45 109 chr1 13640074 13640294 -268553370 - MIR SINE MIR -32 230 25 740 133 83 0 chr1 13640338 13640458 -268553206 + FLAM_C SINE Alu 3 132 -1 254 241 71 62 chr1 13640513 13640625 -268553039 + L1MB8 LINE L1 5710 5822 -340 1139 196 0 60 chr1 13640914 13640979 -268552685 + MER58A DNA MER1_type 4 71 -2349 1914 105 10 61 chr1 13640979 13641275 -268552389 - AluSg SINE Alu -9 301 21 1139 196 0 60 chr1 13641275 13641444 -268552220 + MER58A DNA MER1_type 71 224 0 259 150 25 0 chr1 13641486 13641545 -268552119 + MIR SINE MIR 94 140 -68 502 160 6 141 chr1 13641584 13641740 -268551924 + L1MB8 LINE L1 5960 6094 -84 1112 113 39 87 chr1 13641758 13641988 -268551676 - MER20 DNA MER1_type 0 219 1 2071 114 34 0 chr1 13642792 13643089 -268550575 - AluSx SINE Alu -5 307 1 345 314 39 0 chr1 13643175 13643277 -268550387 - MER81 DNA DNA 0 114 9 372 128 0 96 chr1 13644442 13644536 -268549128 - L1PA11 LINE L1 0 6174 6090 180 135 0 0 chr1 13644697 13644734 -268548930 + (T)n Simple_repeat Simple_repeat 1 37 0 2309 103 0 10 chr1 13644855 13645166 -268548498 + AluSx SINE Alu 1 308 -4 2350 116 0 0 chr1 13645591 13645901 -268547763 - AluSg SINE Alu 0 310 1 2484 62 10 0 chr1 13645911 13646215 -268547449 - AluY SINE Alu -4 307 1 697 218 0 0 chr1 13646270 13646403 -268547261 - FLAM_A SINE Alu 0 133 1 21 36 0 0 chr1 13646841 13646869 -268546795 + AT_rich Low_complexity Low_complexity 1 28 0 5890 41 0 3 chr1 13647061 13647763 -268545901 - L1PA8 LINE L1 -4 6168 5469 833 254 106 106 chr1 13647857 13648166 -268545498 - MLT1K LTR MaLR 0 588 280 2218 97 0 17 chr1 13648166 13648464 -268545200 + AluSp SINE Alu 1 293 -20 833 254 106 106 chr1 13648464 13648698 -268544966 - MLT1K LTR MaLR -308 280 42 2218 108 3 0 chr1 13648698 13648993 -268544671 + AluSx SINE Alu 3 298 -14 833 254 106 106 chr1 13648993 13649035 -268544629 - MLT1K LTR MaLR -545 43 2 1106 60 0 8 chr1 13649410 13649543 -268544121 - AluY SINE Alu -179 132 1 2517 85 0 0 chr1 13649543 13649850 -268543814 - AluSx SINE Alu -5 307 1 2740 180 15 21 chr1 13650297 13650977 -268542687 - L1MB5 LINE L1 -265 5909 5227 1824 150 21 3 chr1 13650977 13651264 -268542400 - AluJb SINE Alu -20 292 1 2740 180 15 21 chr1 13651264 13651438 -268542226 - L1MB5 LINE L1 -947 5227 5054 1606 103 4 30 chr1 13651438 13651670 -268541994 - AluSp SINE Alu -9 304 79 2740 180 15 21 chr1 13651670 13651705 -268541959 - L1MB5 LINE L1 -1120 5054 5020 2584 115 58 19 chr1 13651705 13652115 -268541549 - MSTB LTR MaLR 0 426 1 2740 180 15 21 chr1 13652115 13652308 -268541356 - L1MB5 LINE L1 -1154 5020 4768 689 225 0 0 chr1 13652308 13652428 -268541236 - FLAM_A SINE Alu -9 124 5 2568 166 25 53 chr1 13652442 13653004 -268540660 - L1MA9 LINE L1 -36 6276 5731 461 180 20 50 chr1 13653001 13653101 -268540563 - L1MB5 LINE L1 -1367 4779 4683 * 297 174 0 0 chr1 13653115 13653161 -268540503 + Charlie5 DNA MER1_type 361 406 -2206 * 479 154 22 22 chr1 13653154 13653245 -268540419 + Charlie5 DNA MER1_type 2495 2585 -27 2822 72 6 6 chr1 13653544 13653906 -268539758 - THE1B LTR MaLR 0 364 3 306 267 158 12 chr1 13653942 13654107 -268539557 - MLT1L LTR MaLR -422 193 5 2254 99 3 3 chr1 13655018 13655310 -268538354 - AluSc SINE Alu -17 292 1 1413 224 29 7 chr1 13655356 13655637 -268538027 + AluJb SINE Alu 1 287 -25 2555 54 0 3 chr1 13655818 13656115 -268537549 - AluY SINE Alu -15 296 1 215 273 30 0 chr1 13656167 13656233 -268537431 - L2 LINE L2 -4 3268 3201 415 245 58 101 chr1 13656263 13656471 -268537193 - MIR SINE MIR -25 237 40 2476 109 34 0 chr1 13656491 13656841 -268536823 - THE1C LTR MaLR -13 362 1 195 317 85 24 chr1 13656881 13656963 -268536701 - L2 LINE L2 -181 3091 3005 1624 173 73 12 chr1 13657652 13657994 -268535670 + MER47A DNA MER2_type 1 363 -3 255 255 202 0 chr1 13658362 13658456 -268535208 + L2 LINE L2 3160 3272 0 225 256 22 22 chr1 13658851 13658941 -268534723 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 464 140 4 25 chr1 13659054 13659312 -268534352 + AluSq SINE Alu 1 309 -4 2129 104 7 0 chr1 13659620 13659924 -268533740 - AluSx SINE Alu 0 306 1 837 225 31 64 chr1 13659953 13660271 -268533393 + MLT2D LTR ERVL 83 391 -73 1546 101 0 0 chr1 13661246 13661445 -268532219 - AluSc SINE Alu -110 199 1 2155 98 10 10 chr1 13662012 13662309 -268531355 - AluSc SINE Alu -12 297 1 681 125 10 10 chr1 13662729 13662833 -268530831 + FLAM_A SINE Alu 20 123 -19 259 247 35 24 chr1 13662835 13662920 -268530744 + MIR SINE MIR 46 131 -77 2114 245 158 9 chr1 13664359 13665434 -268528230 - L2 LINE L2 0 3313 2075 2380 66 0 7 chr1 13665531 13665840 -268527824 + AluY SINE Alu 1 307 0 213 329 109 16 chr1 13666197 13666519 -268527145 + L2 LINE L2 1865 2216 -1098 * 274 296 62 0 chr1 13666518 13666599 -268527065 + L2 LINE L2 3199 3284 -29 691 194 0 30 chr1 13666831 13666965 -268526699 - FLAM_A SINE Alu -2 131 2 432 135 203 0 chr1 13666976 13667050 -268526614 - 5S rRNA rRNA -32 89 1 1602 260 32 40 chr1 13667413 13667656 -268526008 + LTR33 LTR ERVL 1 244 -277 2418 85 0 3 chr1 13667656 13667951 -268525713 - AluSx SINE Alu -18 294 1 1602 260 32 40 chr1 13667951 13668230 -268525434 + LTR33 LTR ERVL 244 519 -2 2486 87 3 0 chr1 13669024 13669336 -268524328 - AluSq SINE Alu 0 313 1 2552 42 0 29 chr1 13669431 13669738 -268523926 - AluY SINE Alu -13 298 1 29 0 0 0 chr1 13669745 13669774 -268523890 + AT_rich Low_complexity Low_complexity 1 29 0 778 209 6 31 chr1 13670380 13670543 -268523121 + FRAM SINE Alu 3 161 -5 1463 173 36 0 chr1 13670607 13670855 -268522809 + AluSq SINE Alu 44 300 -13 253 154 0 0 chr1 13672287 13672326 -268521338 + 5S rRNA rRNA 4 42 -79 2352 103 0 3 chr1 13672747 13673049 -268520615 - AluSx SINE Alu -11 301 1 2539 63 0 28 chr1 13673940 13674259 -268519405 - AluY SINE Alu 0 311 2 304 296 56 21 chr1 13674290 13674432 -268519232 - MIR SINE MIR -106 156 10 2350 190 73 41 chr1 13675905 13676115 -268517549 + L1ME4a LINE L1 4672 4874 -1300 2564 59 3 3 chr1 13676115 13676421 -268517243 + AluSp SINE Alu 1 306 -7 2350 190 73 41 chr1 13676421 13677104 -268516560 + L1ME4a LINE L1 4874 5605 -569 885 195 0 0 chr1 13677109 13677258 -268516406 + FRAM SINE Alu 5 153 -23 2018 145 17 20 chr1 13677266 13677617 -268516047 + L1MB7 LINE L1 5816 6165 -19 344 88 0 35 chr1 13677653 13677710 -268515954 + L1M LINE L1 5330 5384 -790 946 187 28 6 chr1 13679476 13679658 -268514006 + MER20 DNA MER1_type 34 219 0 295 264 169 22 chr1 13680499 13680677 -268512987 + L1ME4a LINE L1 5754 5957 -164 776 151 0 27 chr1 13681001 13681147 -268512517 + AluSg/x SINE Alu 164 305 -5 733 272 95 59 chr1 13681901 13682435 -268511229 + L1MC4 LINE L1 5344 5857 -1951 2150 129 3 0 chr1 13682435 13682744 -268510920 + AluSx SINE Alu 1 310 -2 733 272 95 59 chr1 13682744 13683410 -268510254 + L1MC4 LINE L1 5857 6581 -1227 2268 103 3 0 chr1 13683410 13683711 -268509953 + AluSq SINE Alu 3 304 -9 733 272 95 59 chr1 13683711 13684095 -268509569 + L1MC4 LINE L1 6581 6950 -858 680 209 9 65 chr1 13684153 13684386 -268509278 + L1MC5 LINE L1 6957 7094 -714 2398 64 0 7 chr1 13684387 13684685 -268508979 + AluY SINE Alu 1 296 -15 318 268 45 58 chr1 13684889 13685139 -268508525 + L1MC4 LINE L1 7293 7649 -393 2286 78 92 9 chr1 13685251 13685586 -268508078 + L1PA14 LINE L1 5794 6156 -5 370 155 0 0 chr1 13686732 13686790 -268506874 + Alu SINE Alu 244 301 -1 2388 74 3 0 chr1 13687610 13687909 -268505755 - AluSc SINE Alu -9 300 1 1808 124 68 45 chr1 13688222 13688602 -268505062 + Charlie1 DNA MER1_type 2346 2734 -27 2246 70 0 20 chr1 13688603 13688905 -268504759 + AluY SINE Alu 1 296 -15 352 316 125 6 chr1 13688946 13689114 -268504550 - MIR SINE MIR -72 190 3 1101 143 16 21 chr1 13689373 13689562 -268504102 + MSTB1 LTR MaLR 1 188 -244 5149 99 10 28 chr1 13689562 13690222 -268503442 + HSMAR1 DNA Mariner 1 649 -638 2155 54 47 39 chr1 13690222 13690526 -268503138 + AluY SINE Alu 1 306 0 5149 99 10 28 chr1 13690526 13690591 -268503073 + HSMAR1 DNA Mariner 649 714 -573 207 244 0 0 chr1 13694540 13694581 -268499083 + (CGTG)n Simple_repeat Simple_repeat 4 44 0 2156 126 0 3 chr1 13694793 13695086 -268498578 - AluSx SINE Alu -20 292 1 337 285 95 15 chr1 13695088 13695225 -268498439 + MIR SINE MIR 94 241 -21 217 313 16 0 chr1 13695487 13695551 -268498113 - L2 LINE L2 -15 3298 3234 1768 200 97 34 chr1 13696218 13696693 -268496971 + MLT1D LTR MaLR 1 505 0 446 145 0 0 chr1 13696823 13696899 -268496765 - MSTA LTR MaLR -352 76 1 923 300 33 37 chr1 13696902 13697464 -268496200 - L2 LINE L2 -37 3276 2722 2648 222 2 14 chr1 13697536 13698044 -268495620 + MLT1F LTR MaLR 26 527 -15 303 293 0 0 chr1 13698527 13698609 -268495055 - L2 LINE L2 0 3313 3232 1059 205 0 5 chr1 13698743 13698938 -268494726 - MLT1A1 LTR MaLR 0 365 172 377 123 0 110 chr1 13698962 13699035 -268494629 - MLT1A1 LTR MaLR -170 204 140 2361 68 0 32 chr1 13699036 13699347 -268494317 + AluY SINE Alu 1 301 -10 1837 101 65 14 chr1 13699355 13699633 -268494031 + AluSg SINE Alu 2 293 -17 2012 122 7 0 chr1 13750569 13750863 -268442801 + AluSx SINE Alu 1 296 -16 212 289 0 19 chr1 13752284 13752336 -268441328 + MIR SINE MIR 22 72 -190 602 278 0 40 chr1 13752712 13752888 -268440776 - MER58B DNA MER1_type -1 340 172 279 347 0 0 chr1 13753026 13753173 -268440491 + G-rich Low_complexity Low_complexity 1 147 0 4926 240 27 13 chr1 13753254 13754605 -268439059 - L1P LINE L1 -898 5248 3880 192 262 0 0 chr1 13755345 13755387 -268438277 + MIR SINE MIR 33 74 -134 1728 179 18 34 chr1 13755504 13755884 -268437780 + MLT1A2 LTR MaLR 1 374 0 34 0 0 0 chr1 13755898 13755932 -268437732 + AT_rich Low_complexity Low_complexity 1 34 0 1577 178 61 56 chr1 13757121 13757481 -268436183 - MLT1A2 LTR MaLR -12 362 1 2307 76 6 31 chr1 13757804 13758121 -268435543 - AluSc SINE Alu 0 309 1 226 196 120 43 chr1 13758351 13758443 -268435221 - MIR3 SINE MIR -22 186 88 474 275 55 59 chr1 13758911 13759147 -268434517 - L2 LINE L2 -208 3105 2871 200 291 38 38 chr1 13759226 13759305 -268434359 - L2 LINE L2 -588 2726 2648 427 293 0 14 chr1 13760402 13760542 -268433122 - MIR SINE MIR 0 262 125 1043 278 46 9 chr1 13760657 13760984 -268432680 - L1ME2 LINE L1 -10 6154 5816 25 65 0 0 chr1 13761169 13761215 -268432449 + AT_rich Low_complexity Low_complexity 1 46 0 679 243 53 5 chr1 13761604 13761810 -268431854 + MIR SINE MIR 47 262 0 273 275 166 13 chr1 13762832 13763061 -268430603 + L2 LINE L2 2852 3115 -198 2135 77 8 0 chr1 13764277 13764537 -268429127 - AluSc SINE Alu -12 297 36 278 221 19 29 chr1 13764865 13764969 -268428695 - Charlie1 DNA MER1_type -67 2694 2592 2256 107 0 0 chr1 13764993 13765284 -268428380 - AluSx SINE Alu -21 291 1 479 269 17 0 chr1 13765288 13765407 -268428257 - L1MD3 LINE L1 -71 7924 7804 890 198 104 5 chr1 13765412 13765614 -268428050 - Charlie1 DNA MER1_type -2520 241 20 271 289 78 0 chr1 13765639 13765729 -268427935 + MIR SINE MIR 12 108 -154 516 288 135 9 chr1 13765739 13765968 -268427696 + MIR SINE MIR 5 262 0 306 171 53 0 chr1 13765973 13766049 -268427615 + MIR SINE MIR 173 252 -10 2247 82 29 0 chr1 13767050 13767329 -268426335 - AluSx SINE Alu -20 292 6 246 304 76 19 chr1 13768003 13768161 -268425503 - L2 LINE L2 -52 3261 3095 261 75 0 0 chr1 13771093 13771133 -268422531 + (CA)n Simple_repeat Simple_repeat 2 41 0 218 293 35 0 chr1 13771797 13771855 -268421809 - MIR SINE MIR -60 148 89 234 300 138 8 chr1 13773331 13773461 -268420203 + MIR SINE MIR 43 189 -73 1263 176 9 9 chr1 13775326 13775559 -268418105 - L1MC1 LINE L1 -1 6332 6100 887 237 39 93 chr1 13775576 13775881 -268417783 - L1ME4a LINE L1 -15 6106 5845 1901 125 25 50 chr1 13775881 13776201 -268417463 - AluJb SINE Alu 0 312 1 887 237 39 93 chr1 13776201 13776561 -268417103 - L1ME4a LINE L1 -276 5845 5467 1526 184 61 0 chr1 13776981 13777274 -268416390 + MER58B DNA MER1_type 31 341 0 2419 77 0 6 chr1 13778815 13779127 -268414537 - AluY SINE Alu -1 310 1 428 282 63 57 chr1 13779329 13779645 -268414019 - L1ME LINE L1 -302 5819 5502 208 289 53 0 chr1 13780248 13780324 -268413340 + MIR SINE MIR 176 255 -7 308 277 135 0 chr1 13780373 13780536 -268413128 + MIR SINE MIR 42 225 -37 405 0 0 0 chr1 13781500 13781545 -268412119 + (TG)n Simple_repeat Simple_repeat 2 46 0 1708 185 7 3 chr1 13781981 13782279 -268411385 - AluJb SINE Alu -11 301 3 2483 78 0 3 chr1 13782897 13783206 -268410458 + AluY SINE Alu 1 308 -3 734 210 84 88 chr1 13783972 13784234 -268409430 + MIR SINE MIR 2 262 0 612 268 82 39 chr1 13784246 13784477 -268409187 + MIR SINE MIR 4 244 -18 599 295 96 56 chr1 13784831 13785205 -268408459 - L2 LINE L2 -1 3312 2914 2331 94 3 3 chr1 13785205 13785502 -268408162 - AluSg SINE Alu -13 297 1 599 295 96 56 chr1 13785502 13785595 -268408069 - L2 LINE L2 -399 2914 2826 33 0 0 0 chr1 13785972 13786005 -268407659 + AT_rich Low_complexity Low_complexity 1 33 0 1781 177 0 16 chr1 13786281 13786633 -268407031 - AluJb SINE Alu 0 312 4 25 0 0 0 chr1 13787227 13787252 -268406412 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 13787375 13787410 -268406254 + AT_rich Low_complexity Low_complexity 1 35 0 195 42 0 0 chr1 13787549 13787573 -268406091 + (A)n Simple_repeat Simple_repeat 1 24 0 793 196 130 27 chr1 13787575 13788278 -268405386 - L1MC4 LINE L1 -110 7885 7024 27 87 0 0 chr1 13788961 13789030 -268404634 + GC_rich Low_complexity Low_complexity 1 69 0 24 67 0 0 chr1 13789045 13789090 -268404574 + GC_rich Low_complexity Low_complexity 1 45 0 37 99 0 0 chr1 13789273 13789394 -268404270 + GC_rich Low_complexity Low_complexity 1 121 0 198 91 0 0 chr1 13790155 13790188 -268403476 + (T)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 13791305 13791326 -268402338 + AT_rich Low_complexity Low_complexity 1 21 0 222 174 0 0 chr1 13791715 13791761 -268401903 + C-rich Low_complexity Low_complexity 1 46 0 378 218 23 11 chr1 13791763 13791850 -268401814 - L2 LINE L2 0 3272 3185 283 117 67 33 chr1 13791904 13791964 -268401700 + L2 LINE L2 3250 3311 -2 21 0 0 0 chr1 13792263 13792284 -268401380 + AT_rich Low_complexity Low_complexity 1 21 0 220 268 21 120 chr1 13792560 13792702 -268400962 + MIR SINE MIR 71 198 -64 373 281 79 7 chr1 13793635 13793774 -268399890 - L2 LINE L2 -6 3307 3159 239 317 2 0 chr1 13794202 13794270 -268399394 - MIR SINE MIR -105 103 43 639 180 0 0 chr1 13795582 13795693 -268397971 - FLAM_A SINE Alu -12 130 20 2415 64 0 38 chr1 13795749 13796062 -268397602 + AluY SINE Alu 1 301 -10 342 226 59 20 chr1 13796616 13796718 -268396946 - MIR SINE MIR -76 186 81 198 0 0 0 chr1 13797558 13797580 -268396084 + (T)n Simple_repeat Simple_repeat 1 22 0 2366 82 3 13 chr1 13797941 13798245 -268395419 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 13798942 13798963 -268394701 + AT_rich Low_complexity Low_complexity 1 21 0 418 297 87 10 chr1 13800349 13800544 -268393120 + MIR SINE MIR 21 230 -32 192 273 91 30 chr1 13801886 13801985 -268391679 - MIR SINE MIR -12 250 146 2274 97 0 3 chr1 13805244 13805544 -268388120 - AluSg SINE Alu -11 299 1 1705 149 26 46 chr1 13807083 13807385 -268386279 - AluJo SINE Alu -16 296 1 1577 165 13 53 chr1 13807474 13807777 -268385887 + AluJo SINE Alu 2 292 -20 2484 58 0 19 chr1 13807854 13808162 -268385502 - AluY SINE Alu -9 302 1 2291 100 0 13 chr1 13808162 13808463 -268385201 - AluSq SINE Alu -16 297 1 236 357 0 10 chr1 13808463 13808561 -268385103 + MIR SINE MIR 48 144 -64 944 227 23 9 chr1 13809630 13809846 -268383818 + MER20 DNA MER1_type 1 219 0 2535 57 3 0 chr1 13811229 13811528 -268382136 + AluY SINE Alu 1 300 -11 209 139 23 0 chr1 13812794 13812837 -268380827 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 1726 172 10 10 chr1 13813209 13813505 -268380159 + AluJo SINE Alu 1 296 -16 418 279 30 24 chr1 13813566 13813731 -268379933 + L1ME3A LINE L1 5991 6156 -14 2525 41 30 3 chr1 13814474 13814769 -268378895 + AluY SINE Alu 1 303 -8 2066 286 120 29 chr1 13816206 13817502 -268376162 + L2 LINE L2 1650 3061 -252 294 277 69 0 chr1 13817913 13818014 -268375650 + L2 LINE L2 3201 3308 -5 261 233 0 0 chr1 13818372 13818462 -268375202 + GA-rich Low_complexity Low_complexity 1 90 0 342 171 0 0 chr1 13820727 13820797 -268372867 + CT-rich Low_complexity Low_complexity 3 72 0 2512 66 0 7 chr1 13825611 13825915 -268367749 - AluY SINE Alu -7 304 3 35 0 0 0 chr1 13827410 13827445 -268366219 + AT_rich Low_complexity Low_complexity 1 35 0 230 231 0 46 chr1 13828243 13828308 -268365356 - MER116 DNA Mariner -12 68 7 260 274 20 39 chr1 13828658 13828760 -268364904 + MIR3 SINE MIR 82 181 -27 342 270 0 36 chr1 13829137 13829248 -268364416 - L2 LINE L2 -19 3294 3188 200 234 172 62 chr1 13829846 13829974 -268363690 + MER5B DNA MER1_type 18 159 -19 222 244 78 33 chr1 13830770 13830860 -268362804 - MIR SINE MIR -123 139 46 299 251 190 0 chr1 13832577 13832756 -268360908 - MIR SINE MIR -39 223 11 1029 126 181 25 chr1 13833502 13833701 -268359963 + MER30 DNA MER1_type 1 230 0 613 262 59 39 chr1 13833992 13834278 -268359386 + L2 LINE L2 3017 3308 -5 268 300 54 46 chr1 13834281 13834411 -268359253 + MIR SINE MIR 53 183 -79 752 211 41 6 chr1 13835044 13835215 -268358449 - MIR SINE MIR -50 212 36 237 270 80 44 chr1 13835675 13835812 -268357852 + MER117 DNA MER1_type 48 189 -8 1932 171 13 0 chr1 13836253 13836552 -268357112 + AluJo SINE Alu 1 303 -9 263 250 201 25 chr1 13837500 13837620 -268356044 + MER5A DNA MER1_type 24 175 -14 2536 67 0 3 chr1 13838941 13839240 -268354424 + AluSq SINE Alu 1 298 -15 243 0 0 0 chr1 13839843 13839870 -268353794 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 613 262 144 33 chr1 13839890 13840453 -268353211 - L2 LINE L2 -32 3281 1179 206 180 20 60 chr1 13840620 13840670 -268352994 - L2 LINE L2 -23 3249 3202 226 330 39 0 chr1 13841155 13841258 -268352406 - MER103 DNA DNA -12 154 48 946 241 55 14 chr1 13841277 13841497 -268352167 + MIR SINE MIR 33 261 -1 370 297 55 0 chr1 13843076 13843204 -268350460 - L2 LINE L2 0 3272 3138 216 330 52 0 chr1 13843345 13843442 -268350222 + MIR3 SINE MIR 84 185 -23 283 316 70 51 chr1 13843785 13843943 -268349721 + MIR SINE MIR 31 191 -71 382 227 52 10 chr1 13844320 13844417 -268349247 - MER5A DNA MER1_type -83 106 6 517 299 0 0 chr1 13844448 13844582 -268349082 + MER5B DNA MER1_type 45 178 0 544 319 14 47 chr1 13844730 13844977 -268348687 + MIR SINE MIR 11 253 -9 351 362 7 7 chr1 13844996 13845137 -268348527 - MIR3 SINE MIR -50 158 18 1356 266 180 21 chr1 13845724 13846570 -268347094 + L2 LINE L2 1760 2739 -575 281 224 15 0 chr1 13846629 13846696 -268346968 + L2 LINE L2 2901 2968 -346 855 293 89 14 chr1 13847083 13847452 -268346212 - L2 LINE L2 -3 3310 2914 2270 40 98 0 chr1 13847989 13848263 -268345401 + AluY SINE Alu 1 301 -10 312 290 90 41 chr1 13848461 13848606 -268345058 - L2 LINE L2 0 3272 3121 473 253 156 0 chr1 13848703 13848857 -268344807 - MER5B DNA MER1_type 0 178 1 410 312 153 29 chr1 13848970 13849492 -268344172 - L2 LINE L2 -559 2755 2169 181 286 156 13 chr1 13849501 13849578 -268344086 + MIR SINE MIR 21 108 -154 1485 189 53 47 chr1 13849582 13849942 -268343722 - MLT1A2 LTR MaLR -12 362 1 2611 71 0 0 chr1 13850262 13850573 -268343091 - AluY SINE Alu 0 311 1 2311 95 3 0 chr1 13850682 13850977 -268342687 + AluSx SINE Alu 1 296 -16 252 294 93 60 chr1 13851372 13851790 -268341874 - L2 LINE L2 -38 3275 2844 244 293 79 65 chr1 13851888 13852103 -268341561 - L2 LINE L2 -611 2703 2486 323 316 22 7 chr1 13852321 13852460 -268341204 - L2 LINE L2 -923 2391 2251 269 252 26 122 chr1 13852683 13852798 -268340866 - MIR SINE MIR -62 146 43 265 299 46 0 chr1 13852961 13853048 -268340616 - MIR SINE MIR -116 146 56 298 285 23 46 chr1 13853301 13853431 -268340233 + MIR SINE MIR 90 216 -46 810 204 94 5 chr1 13854299 13854490 -268339174 - MER20 DNA MER1_type -10 209 2 560 264 28 7 chr1 13854704 13854848 -268338816 + MIR SINE MIR 92 238 -24 2194 94 0 18 chr1 13854875 13855191 -268338473 - AluSx SINE Alu 0 311 1 535 294 73 45 chr1 13855205 13855450 -268338214 - L2 LINE L2 -48 3224 2973 21 0 0 0 chr1 13855473 13855494 -268338170 + AT_rich Low_complexity Low_complexity 1 21 0 244 227 299 0 chr1 13856036 13856133 -268337531 - MLT1I LTR MaLR -275 134 9 957 248 66 0 chr1 13856509 13856735 -268336929 + MIR SINE MIR 22 262 0 1234 152 20 53 chr1 13856853 13857097 -268336567 + MER46A DNA MER2_type 1 236 0 1832 83 0 4 chr1 13857497 13857727 -268335937 + AluY SINE Alu 1 229 -82 2367 79 3 28 chr1 13858147 13858464 -268335200 - AluSc SINE Alu 0 309 1 269 264 104 32 chr1 13858694 13858819 -268334845 - MIR3 SINE MIR -22 186 53 34 0 0 0 chr1 13859322 13859356 -268334308 + AT_rich Low_complexity Low_complexity 1 34 0 1781 179 18 34 chr1 13859370 13859750 -268333914 - MLT1A2 LTR MaLR 0 374 1 234 254 254 63 chr1 13859767 13859909 -268333755 - MIR3 SINE MIR -7 201 33 676 254 0 30 chr1 13860896 13861065 -268332599 + MIR SINE MIR 99 262 0 215 226 0 19 chr1 13861086 13861139 -268332525 + (TAG)n Simple_repeat Simple_repeat 1 52 0 2030 104 11 24 chr1 13861211 13861546 -268332118 - AluSx SINE Alu 0 331 1 468 239 44 61 chr1 13861656 13861836 -268331828 + MIR SINE MIR 20 196 -66 516 292 14 0 chr1 13861842 13861986 -268331678 + L1ME LINE L1 5557 5702 -468 1150 264 86 59 chr1 13861994 13862166 -268331498 + L1ME3A LINE L1 5606 5772 -398 2508 69 10 0 chr1 13862166 13862471 -268331193 - AluY SINE Alu -3 308 1 1150 264 86 59 chr1 13862471 13862843 -268330821 + L1ME3A LINE L1 5772 6165 -5 195 129 0 0 chr1 13863046 13863077 -268330587 + (CGTG)n Simple_repeat Simple_repeat 1 31 0 3188 199 32 28 chr1 13865098 13865212 -268328452 - L1MB8 LINE L1 0 6178 6066 2588 47 3 0 chr1 13865212 13865509 -268328155 - AluY SINE Alu -13 298 1 3188 199 32 28 chr1 13865509 13866121 -268327543 - L1MB8 LINE L1 -112 6066 5449 1849 162 180 34 chr1 13866382 13866415 -268327249 - MLT2B1 LTR ERVL -7 513 486 198 118 0 0 chr1 13866415 13866449 -268327215 + (TA)n Simple_repeat Simple_repeat 2 35 0 1849 162 180 34 chr1 13866449 13866860 -268326804 - MLT2B1 LTR ERVL -34 486 4 223 184 0 41 chr1 13867123 13867172 -268326492 - L2 LINE L2 -196 3076 3030 389 313 121 12 chr1 13867515 13867744 -268325920 - MIR SINE MIR -9 253 3 293 258 132 28 chr1 13867920 13868073 -268325591 + MIR SINE MIR 36 199 -58 234 282 99 63 chr1 13868090 13868232 -268325432 + MER5A DNA MER1_type 40 186 -3 298 330 0 0 chr1 13869451 13869542 -268324122 + MER96 DNA MER1_type? 85 175 0 521 319 142 22 chr1 13869587 13870053 -268323611 + L2 LINE L2 2708 3240 -32 658 201 39 22 chr1 13870313 13870492 -268323172 - MER53 DNA DNA -7 182 1 2438 87 3 0 chr1 13871335 13871635 -268322029 - AluSq SINE Alu -12 301 1 620 239 84 7 chr1 13871690 13871845 -268321819 + MIR SINE MIR 61 227 -35 227 284 57 34 chr1 13872136 13872224 -268321440 - MIR SINE MIR -89 173 84 222 261 62 15 chr1 13873613 13873678 -268319986 + L3 LINE CR1 1299 1366 -211 2350 100 0 10 chr1 13873694 13874005 -268319659 - AluSx SINE Alu -4 308 1 1704 121 161 75 chr1 13874316 13874688 -268318976 - MER4A LTR ERV1 0 664 261 571 162 0 10 chr1 13874688 13874787 -268318877 - MER4A LTR ERV1 -566 98 1 1207 211 13 55 chr1 13875615 13875923 -268317741 - MLT1B LTR MaLR -88 302 8 505 247 62 19 chr1 13876098 13876260 -268317404 - MLT1I LTR MaLR -1 408 240 246 309 132 23 chr1 13876272 13876492 -268317172 - L1ME3A LINE L1 0 6170 5927 312 156 0 0 chr1 13876492 13876537 -268317127 - L1MD2 LINE L1 -17 6342 6298 3417 189 85 51 chr1 13876573 13876874 -268316790 - L1MD1 LINE L1 -38 6204 5915 1947 145 0 44 chr1 13876874 13877191 -268316473 - AluJo SINE Alu -9 303 1 3417 189 85 51 chr1 13877191 13878269 -268315395 - L1MD1 LINE L1 -327 5915 4778 844 76 0 23 chr1 13878354 13878486 -268315178 + (TTCC)n Simple_repeat Simple_repeat 4 132 0 2036 140 0 4 chr1 13878486 13878764 -268314900 - AluSx SINE Alu -35 277 1 2508 42 0 0 chr1 13878801 13879113 -268314551 + AluY SINE Alu 1 312 0 4145 139 2 5 chr1 13879113 13879751 -268313913 - L1PA15 LINE L1 -16 6149 5514 334 273 82 31 chr1 13879892 13880086 -268313578 - MIR SINE MIR -1 261 58 3540 39 0 5 chr1 13880320 13880790 -268312874 + L1PA3 LINE L1 5727 6155 0 8398 170 25 5 chr1 13880795 13882652 -268311012 - L1P4 LINE L1 -636 6967 5082 1477 151 38 24 chr1 13882674 13882966 -268310698 + THE1C LTR MaLR 80 375 0 343 159 0 29 chr1 13883005 13883074 -268310590 - THE1C LTR MaLR -308 67 1 3988 209 18 5 chr1 13883074 13884119 -268309545 - L1P4 LINE L1 -2531 5053 3134 2113 186 61 19 chr1 13884119 13884591 -268309073 - LTR22B LTR ERVK 0 492 1 480 345 17 0 chr1 13884604 13884842 -268308822 - L1P4 LINE L1 -7332 249 8 4523 222 74 36 chr1 13884865 13885297 -268308367 - L1MDa LINE L1 -1430 5110 4696 2286 95 0 10 chr1 13885297 13885592 -268308072 - AluSg SINE Alu -18 292 1 4523 222 74 36 chr1 13885592 13887248 -268306416 - L1MDa LINE L1 -1844 4696 3014 1984 141 24 29 chr1 13887248 13887625 -268306039 + THE1C LTR MaLR 1 375 0 10240 126 34 5 chr1 13887625 13889161 -268304503 + THE1C-int LTR MaLR 1 1580 0 384 109 0 0 chr1 13889161 13889216 -268304448 + THE1C LTR MaLR 1 55 -373 2435 135 28 6 chr1 13889216 13889572 -268304092 + THE1B LTR MaLR 1 364 0 9602 108 2 2 chr1 13889572 13890855 -268302809 + THE1B-int LTR MaLR 1 1284 -296 561 182 48 53 chr1 13890855 13891029 -268302635 - MER6 DNA MER2_type -27 838 -64 939 266 48 25 chr1 13891033 13891469 -268302195 + Charlie7 DNA MER1_type 1980 2425 -187 2216 109 3 0 chr1 13891498 13891809 -268301855 + THE1B-int LTR MaLR 1269 1580 0 2157 134 39 22 chr1 13891809 13892167 -268301497 + THE1B LTR MaLR 1 364 0 1794 149 21 24 chr1 13892167 13892495 -268301169 + THE1C LTR MaLR 49 375 0 526 242 28 11 chr1 13892499 13892681 -268300983 - L1MDa LINE L1 -3529 3011 2827 3167 177 78 35 chr1 13892696 13893202 -268300462 - L1MDa LINE L1 -3947 2593 2037 2102 198 33 54 chr1 13893202 13893718 -268299946 - MLT1D LTR MaLR 0 505 1 3167 177 78 35 chr1 13893718 13894023 -268299641 - L1MDa LINE L1 -4503 2037 1747 638 173 80 49 chr1 13894004 13894166 -268299498 - L1MC5 LINE L1 -1127 6834 6668 * 6612 176 7 16 chr1 13894209 13894487 -268299177 - L1PA14 LINE L1 -3 6158 5879 1664 169 67 25 chr1 13894487 13894847 -268298817 + THE1C LTR MaLR 1 375 0 10020 121 16 36 chr1 13894849 13896459 -268297205 + THE1C-int LTR MaLR 3 1580 0 1601 139 119 32 chr1 13896459 13896804 -268296860 + THE1C LTR MaLR 1 375 0 6612 176 7 16 chr1 13896804 13898595 -268295069 - L1PA14 LINE L1 -281 5880 4106 521 363 29 12 chr1 13898621 13898861 -268294803 - MLT1I LTR MaLR -165 244 1 382 308 101 20 chr1 13898967 13899165 -268294499 + MIR SINE MIR 32 245 -17 315 223 121 48 chr1 13899284 13899450 -268294214 - HAL1 LINE L1 -13 2494 2317 610 184 0 0 chr1 13899572 13899670 -268293994 - MER2 DNA MER2_type -246 99 2 1236 280 138 52 chr1 13899717 13900745 -268292919 - HAL1 LINE L1 -312 2195 1064 2257 117 0 3 chr1 13900745 13901045 -268292619 - AluSq SINE Alu -14 299 1 1236 280 138 52 chr1 13901045 13901126 -268292538 - HAL1 LINE L1 -1443 1064 991 442 244 208 5 chr1 13901209 13901406 -268292258 - MIR SINE MIR -15 247 11 281 251 69 86 chr1 13901421 13901596 -268292068 - HAL1 LINE L1 -1637 870 699 371 311 87 71 chr1 13901670 13902156 -268291508 - HAL1 LINE L1 -1939 568 70 2262 107 3 0 chr1 13902156 13902447 -268291217 + AluSx SINE Alu 3 294 -18 371 311 87 71 chr1 13902447 13902510 -268291154 - HAL1 LINE L1 -2437 70 10 1916 148 21 10 chr1 13902514 13902805 -268290859 - AluJb SINE Alu -18 294 1 306 304 20 29 chr1 13903473 13903575 -268290089 + LTR67 LTR ERVL 113 213 -344 321 274 52 22 chr1 13903703 13903838 -268289826 - LTR67 LTR ERVL 0 557 419 1560 101 0 0 chr1 13903980 13904178 -268289486 - AluY SINE Alu -9 302 105 488 179 38 0 chr1 13905073 13905179 -268288485 + L1MB8 LINE L1 6068 6177 -1 2351 104 0 0 chr1 13905189 13905496 -268288168 + AluSc SINE Alu 1 307 -2 1631 199 51 74 chr1 13906669 13907142 -268286522 - MLT1C LTR MaLR 0 467 6 352 315 139 32 chr1 13907150 13907945 -268285719 + L2 LINE L2 2382 3275 -38 394 265 147 55 chr1 13908550 13908931 -268284733 - LTR16A LTR ERVL -10 440 25 693 0 0 0 chr1 13909696 13909773 -268283891 + (TTTC)n Simple_repeat Simple_repeat 2 78 0 6266 85 20 2 chr1 13909778 13910637 -268283027 - L1PA13 LINE L1 -19 6144 5271 1492 181 48 16 chr1 13910990 13911042 -268282622 + MER58B DNA MER1_type 27 76 -2344 1599 94 4 13 chr1 13911042 13911276 -268282388 - L1PA14 LINE L1 0 6161 5930 1492 181 48 16 chr1 13911276 13911533 -268282131 + MER58B DNA MER1_type 76 341 0 244 313 52 21 chr1 13911958 13912054 -268281610 - L2 LINE L2 -8 3264 3166 226 235 0 20 chr1 13912087 13912138 -268281526 - LTR67 LTR ERVL -8 549 500 473 296 6 29 chr1 13912516 13912688 -268280976 - L2 LINE L2 -181 3091 2924 277 197 61 0 chr1 13913856 13913922 -268279742 + MIR3 SINE MIR 91 160 -48 1320 222 76 22 chr1 13913925 13914295 -268279369 - MLT1B LTR MaLR 0 390 1 236 254 0 17 chr1 13914511 13914570 -268279094 + MLT1L LTR MaLR 1 58 -557 428 152 13 25 chr1 13914581 13914660 -268279004 + ORSL DNA AcHobo 9 86 -189 363 231 0 13 chr1 13914697 13914775 -268278889 + ORSL DNA AcHobo 192 268 -7 236 369 10 10 chr1 13914901 13915004 -268278660 + MLT1L LTR MaLR 218 320 -295 2041 178 36 64 chr1 13915161 13915386 -268278278 - MLT1C LTR MaLR -8 459 252 2541 68 0 0 chr1 13915386 13915695 -268277969 + AluY SINE Alu 1 309 -2 2041 178 36 64 chr1 13915695 13915941 -268277723 - MLT1C LTR MaLR -215 252 1 1281 117 0 0 chr1 13915980 13916159 -268277505 - FRAM SINE Alu -5 171 1 1832 154 0 20 chr1 13916316 13916484 -268277180 - AluJb SINE Alu -13 299 138 2295 113 3 3 chr1 13916484 13916795 -268276869 - AluSq SINE Alu -2 311 1 1832 154 0 20 chr1 13916795 13916931 -268276733 - AluJb SINE Alu -174 138 1 302 217 29 0 chr1 13917011 13917080 -268276584 - L2 LINE L2 -305 2967 2897 1143 215 139 3 chr1 13917107 13917395 -268276269 - MLT1D LTR MaLR -178 327 1 526 178 25 76 chr1 13917556 13917713 -268275951 + MER5A DNA MER1_type 1 149 -40 487 186 186 21 chr1 13917719 13917864 -268275800 - MER96B DNA MER1_type? -237 180 12 238 329 20 27 chr1 13917928 13918074 -268275590 - L2 LINE L2 -196 3076 2932 219 150 0 0 chr1 13918131 13918171 -268275493 - L2 LINE L2 -4 3309 3270 497 220 102 0 chr1 13918561 13918679 -268274985 - MER94 DNA DNA -4 130 1 2578 62 0 3 chr1 13919397 13919703 -268273961 + AluY SINE Alu 1 305 -6 1719 259 103 47 chr1 13919710 13920273 -268273391 - L1ME2 LINE L1 -241 5906 5376 1972 149 0 0 chr1 13920273 13920589 -268273075 - AluJb SINE Alu 0 320 5 1719 259 103 47 chr1 13920589 13920895 -268272769 - L1ME2 LINE L1 -771 5376 5089 2285 92 3 3 chr1 13920895 13921190 -268272474 + AluSx SINE Alu 3 297 -15 1719 259 103 47 chr1 13921190 13922160 -268271504 - L1ME2 LINE L1 -1058 5089 3951 977 264 54 70 chr1 13922411 13923371 -268270293 - L1ME2 LINE L1 -3720 2409 1263 2295 223 22 50 chr1 13923394 13923937 -268269727 - MLT2B3 LTR ERVL 0 554 27 300 293 73 6 chr1 13924318 13924482 -268269182 - L1ME2 LINE L1 -4969 1150 976 631 123 16 8 chr1 13924598 13924720 -268268944 + CT-rich Low_complexity Low_complexity 1 123 0 1853 168 7 3 chr1 13924720 13925023 -268268641 - AluJb SINE Alu -8 304 1 4719 221 104 16 chr1 13925149 13925924 -268267740 - L1MC4 LINE L1 -155 7887 7182 357 24 0 0 chr1 13925924 13925966 -268267698 + (TCCA)n Simple_repeat Simple_repeat 4 45 0 4719 221 104 16 chr1 13925966 13926502 -268267162 - L1MC4 LINE L1 -860 7182 6460 21 36 0 0 chr1 13926831 13926859 -268266805 + AT_rich Low_complexity Low_complexity 1 28 0 3136 202 14 3 chr1 13927136 13927785 -268265879 + L1MB7 LINE L1 5519 6174 -10 230 299 41 10 chr1 13927956 13928053 -268265611 + MIR SINE MIR 55 154 -108 3232 72 65 0 chr1 13928413 13928843 -268264821 - LTR22A LTR ERVK 0 458 1 237 333 132 8 chr1 13929458 13929587 -268264077 - MER102a DNA MER1_type -33 297 153 1622 226 8 16 chr1 13929773 13930140 -268263524 - MLT1A1 LTR MaLR -1 364 1 450 290 66 56 chr1 13930474 13930865 -268262799 + L1MC/D LINE L1 5272 5660 -631 372 255 20 10 chr1 13930885 13930983 -268262681 - MER94 DNA DNA -35 99 1 2276 99 0 40 chr1 13931011 13931334 -268262330 - AluSx SINE Alu 0 312 3 23 54 0 0 chr1 13932781 13932818 -268260846 + GC_rich Low_complexity Low_complexity 1 37 0 218 311 56 67 chr1 13934418 13934598 -268259066 + MIR3 SINE MIR 20 197 -11 680 223 71 16 chr1 13934684 13934868 -268258796 + MIR SINE MIR 13 206 -56 839 151 0 0 chr1 13935771 13935897 -268257767 - FRAM SINE Alu -12 164 39 928 228 0 36 chr1 13935917 13936110 -268257554 - MER58A DNA MER1_type 0 224 39 1714 161 0 8 chr1 13936110 13936371 -268257293 - AluJo SINE Alu -53 259 1 1143 222 0 30 chr1 13936846 13937076 -268256588 + MER58A DNA MER1_type 1 223 -1 231 269 0 19 chr1 13937453 13937505 -268256159 - MIR SINE MIR -190 72 22 472 302 92 15 chr1 13938983 13939206 -268254458 - MIR SINE MIR -12 250 15 2168 79 0 0 chr1 13939424 13939689 -268253975 - AluSx SINE Alu -13 299 35 885 237 18 9 chr1 13940428 13940652 -268253012 + MIR SINE MIR 9 234 -28 201 94 0 0 chr1 13940822 13940854 -268252810 + (A)n Simple_repeat Simple_repeat 1 32 0 289 257 114 0 chr1 13940970 13941075 -268252589 - MER94 DNA DNA -16 118 2 322 309 68 25 chr1 13941263 13941425 -268252239 - MER102a DNA MER1_type -161 169 1 1632 138 64 22 chr1 13942301 13942613 -268251051 + L1MA4 LINE L1 5970 6294 -6 906 279 137 64 chr1 13944274 13945559 -268248105 - L1MEd LINE L1 -4742 1568 149 867 185 52 107 chr1 13945576 13945995 -268247669 - MLT1D LTR MaLR 0 505 1 2309 149 37 42 chr1 13949814 13950006 -268243658 + MSTA LTR MaLR 1 192 -236 2215 113 0 3 chr1 13950006 13950297 -268243367 + AluSc SINE Alu 1 290 -19 2309 149 37 42 chr1 13950297 13950534 -268243130 + MSTA LTR MaLR 192 428 0 2064 153 72 48 chr1 13950592 13950821 -268242843 - MSTA LTR MaLR 0 428 183 2171 130 0 0 chr1 13950821 13951128 -268242536 - AluSx SINE Alu -5 307 1 2064 153 72 48 chr1 13951128 13951316 -268242348 - MSTA LTR MaLR -245 183 1 2024 133 28 0 chr1 13952390 13952675 -268240989 - AluSx SINE Alu -19 293 1 347 189 63 11 chr1 13953509 13953604 -268240060 - MER5A DNA MER1_type -1 188 89 782 168 138 6 chr1 13953679 13953846 -268239818 + MER5A DNA MER1_type 1 189 0 362 246 161 0 chr1 13954062 13954192 -268239472 + MIR SINE MIR 80 230 -32 331 221 54 9 chr1 13954250 13954441 -268239223 + MLT1E LTR MaLR 83 368 -286 261 61 0 0 chr1 13954440 13954473 -268239191 + Tigger1 DNA MER2_type 1149 1181 -1237 * 463 157 0 0 chr1 13954476 13954546 -268239118 + AluJ/FLAM SINE Alu 2 71 -241 1232 238 57 3 chr1 13954555 13954854 -268238810 + MLT1E LTR MaLR 279 593 0 234 316 25 0 chr1 13954860 13954939 -268238725 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 963 193 71 42 chr1 13955042 13955281 -268238383 - ORSL DNA AcHobo -29 246 1 212 321 0 0 chr1 13956849 13956905 -268236759 + (TG)n Simple_repeat Simple_repeat 2 57 0 9384 99 31 12 chr1 13956949 13957293 -268236371 + Tigger1 DNA MER2_type 838 1174 -1244 1781 166 10 16 chr1 13957293 13957607 -268236057 + AluJb SINE Alu 1 312 0 9384 99 31 12 chr1 13957607 13958607 -268235057 + Tigger1 DNA MER2_type 1174 2208 -210 545 186 0 0 chr1 13958607 13958704 -268234960 - FRAM SINE Alu -8 168 72 1476 227 79 42 chr1 13958866 13959385 -268234279 - L1ME3A LINE L1 -48 6122 5585 1238 237 162 30 chr1 13959388 13959794 -268233870 - L1ME3A LINE L1 -770 5376 4864 1836 112 24 0 chr1 13959794 13960043 -268233621 + AluSg SINE Alu 46 300 -10 1238 237 162 30 chr1 13960043 13960236 -268233428 - L1ME3A LINE L1 -1282 4864 4698 2783 109 104 0 chr1 13960279 13960719 -268232945 - LTR19A LTR ERV1 0 486 1 311 239 49 65 chr1 13960889 13961054 -268232610 - L1ME3A LINE L1 -1449 4697 4534 1223 212 9 0 chr1 13961054 13961276 -268232388 - MER58A DNA MER1_type 0 224 1 311 239 49 65 chr1 13961276 13961294 -268232370 - L1ME3A LINE L1 -1612 4534 4517 2357 81 0 20 chr1 13961412 13961710 -268231954 - AluY SINE Alu -19 292 1 2583 148 20 26 chr1 13962819 13963071 -268230593 - Tigger2 DNA MER2_type -1 2717 2468 2682 43 0 0 chr1 13963071 13963372 -268230292 + AluY SINE Alu 1 301 -10 2583 148 20 26 chr1 13963372 13963572 -268230092 - Tigger2 DNA MER2_type -250 2468 2268 346 194 15 0 chr1 13963557 13963624 -268230040 - Tigger2 DNA MER2_type -2649 69 2 * 290 308 6 44 chr1 13963670 13963852 -268229812 - L2 LINE L2 -800 2514 2340 27 0 0 0 chr1 13964058 13964085 -268229579 + AT_rich Low_complexity Low_complexity 1 27 0 655 121 0 10 chr1 13964241 13964340 -268229324 + MER4A LTR ERV1 1 98 -566 1742 121 5 80 chr1 13964340 13964711 -268228953 + MER4A LTR ERV1 263 664 0 1534 176 13 54 chr1 13964711 13965095 -268228569 - L1MB8 LINE L1 -32 6146 5773 553 297 178 25 chr1 13965196 13965799 -268227865 - L2 LINE L2 -253 3060 2369 198 260 0 60 chr1 13965900 13965950 -268227714 + L2 LINE L2 3026 3072 -200 183 262 0 0 chr1 13966950 13966992 -268226672 + L3 LINE CR1 974 1015 -562 564 333 80 21 chr1 13967373 13967796 -268225868 - L2 LINE L2 0 3313 2866 219 178 0 22 chr1 13968066 13968111 -268225553 + (ATG)n Simple_repeat Simple_repeat 3 46 0 277 156 0 0 chr1 13968217 13968262 -268225402 - MIR SINE MIR -83 125 81 1114 126 0 13 chr1 13968827 13968986 -268224678 - FRAM SINE Alu -7 169 13 728 281 25 17 chr1 13969571 13969806 -268223858 - MIR SINE MIR -13 249 13 258 227 136 83 chr1 13970310 13970442 -268223222 - L2 LINE L2 -23 3290 3152 312 137 0 0 chr1 13971227 13971278 -268222386 + (TG)n Simple_repeat Simple_repeat 1 51 0 1931 132 0 64 chr1 13971626 13971937 -268221727 - AluSx SINE Alu -21 291 1 565 247 52 65 chr1 13971998 13972038 -268221626 - MIR SINE MIR -23 239 200 2829 10 0 0 chr1 13972038 13972339 -268221325 - AluYa5 SINE Alu -10 301 1 565 247 52 65 chr1 13972339 13972529 -268221135 - MIR SINE MIR -62 200 12 1180 208 7 26 chr1 13972696 13972965 -268220699 - L1MD3 LINE L1 0 7995 7732 2195 92 3 14 chr1 13972990 13973282 -268220382 + AluSp SINE Alu 1 289 -24 381 325 0 0 chr1 13973325 13973448 -268220216 - L2 LINE L2 -1 3312 3190 405 243 223 15 chr1 13973477 13973679 -268219985 - MIR SINE MIR 0 262 19 2323 87 0 0 chr1 13974734 13975050 -268218614 + AluSq SINE Alu 1 316 0 569 246 120 5 chr1 13975064 13975255 -268218409 - MIR SINE MIR -48 214 2 257 207 35 0 chr1 13975563 13975621 -268218043 + MIR SINE MIR 87 146 -62 351 0 0 0 chr1 13975642 13975681 -268217983 + (TG)n Simple_repeat Simple_repeat 2 40 0 3052 124 53 32 chr1 13975840 13975876 -268217788 - L1PB4 LINE L1 -2 6154 6120 2238 102 0 23 chr1 13975876 13976181 -268217483 - AluSp SINE Alu -15 298 1 3052 124 53 32 chr1 13976181 13976670 -268216994 - L1PB4 LINE L1 -36 6120 5618 5947 172 10 29 chr1 13976670 13976816 -268216848 - L1P5 LINE L1 -683 5473 5326 2287 114 7 3 chr1 13976816 13977123 -268216541 - AluSg SINE Alu -2 308 1 5947 172 10 29 chr1 13977123 13978340 -268215324 - L1P5 LINE L1 -830 5326 4122 1025 149 0 0 chr1 13978342 13978496 -268215168 + MST-int LTR MaLR 963 1116 -535 * 5572 170 50 3 chr1 13978461 13979436 -268214228 - MSTA-int LTR MaLR -615 1036 16 2311 176 31 2 chr1 13979436 13979852 -268213812 - MSTA LTR MaLR 0 428 1 2191 186 4 15 chr1 13979852 13980309 -268213355 - L1 LINE L1 -2434 3712 3261 260 231 157 8 chr1 13980352 13980473 -268213191 + L1MDa LINE L1 1278 1416 -5124 2085 118 20 3 chr1 13980692 13981007 -268212657 + AluSx SINE Alu 1 312 0 180 216 0 0 chr1 13981106 13981143 -268212521 - L2 LINE L2 -9 3304 3268 2965 10 0 0 chr1 13982038 13982352 -268211312 + AluYb8 SINE Alu 1 314 -4 728 281 122 47 chr1 13982508 13983104 -268210560 + L1MEd LINE L1 817 1520 -4693 849 113 0 71 chr1 13983104 13983245 -268210419 + FLAM_C SINE Alu 3 133 0 728 281 122 47 chr1 13983245 13983474 -268210190 + L1MEd LINE L1 1520 1731 -4482 23 0 0 0 chr1 13983495 13983518 -268210146 + AT_rich Low_complexity Low_complexity 1 23 0 3528 207 40 13 chr1 13983532 13984323 -268209341 + L1MB8 LINE L1 5360 6172 -6 674 284 58 23 chr1 13984320 13984939 -268208725 + L1MEd LINE L1 1813 2422 -3707 * 2233 100 3 3 chr1 13984971 13985270 -268208394 + AluSx SINE Alu 1 299 -13 288 0 0 0 chr1 13985459 13985491 -268208173 + (TG)n Simple_repeat Simple_repeat 1 32 0 234 0 0 0 chr1 13985490 13985516 -268208148 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 265 296 80 37 chr1 13985831 13985993 -268207671 - L3b LINE CR1 -95 1488 1320 408 259 104 0 chr1 13986074 13986209 -268207455 + MIR SINE MIR 1 149 -113 1418 201 113 36 chr1 13986629 13986850 -268206814 - MLT1D LTR MaLR -17 488 285 1231 126 126 166 chr1 13986850 13987296 -268206368 - MSTA LTR MaLR 0 428 1 1418 201 113 36 chr1 13987296 13987384 -268206280 - MLT1D LTR MaLR -220 285 205 2215 117 27 78 chr1 13987384 13987795 -268205869 - MLT1B LTR MaLR 0 390 1 1418 201 113 36 chr1 13987795 13987901 -268205763 - MLT1D LTR MaLR -300 205 40 2075 116 71 14 chr1 13987996 13988349 -268205315 + THE1C LTR MaLR 3 375 0 368 265 26 8 chr1 13988639 13988756 -268204908 - MIR SINE MIR -116 146 28 238 279 127 57 chr1 13989364 13989593 -268204071 - MIR SINE MIR -1 261 17 520 241 23 8 chr1 13990148 13990281 -268203383 + L2 LINE L2 3175 3309 -4 374 290 41 21 chr1 13990485 13990630 -268203034 - LTR33 LTR ERVL -309 212 65 418 268 237 11 chr1 13991004 13991194 -268202470 + MIR SINE MIR 2 234 -28 404 309 16 0 chr1 13991196 13991319 -268202345 - MER94 DNA DNA -3 131 7 432 0 0 0 chr1 13991403 13991451 -268202213 + (TAA)n Simple_repeat Simple_repeat 3 50 0 405 0 0 0 chr1 13992114 13992159 -268201505 + (TAA)n Simple_repeat Simple_repeat 3 47 0 353 264 76 21 chr1 13992574 13992718 -268200946 + MIR3 SINE MIR 57 208 0 373 239 39 39 chr1 13992720 13992850 -268200814 + L3 LINE CR1 1338 1467 -110 552 269 93 56 chr1 13993196 13993520 -268200144 - HAL1 LINE L1 -856 1651 1316 572 191 8 24 chr1 13993607 13993733 -268199931 + Ricksha DNA DNA 9 132 -3114 * 1069 167 21 0 chr1 13993715 13993901 -268199763 + Ricksha DNA DNA 1707 1896 -1350 683 125 0 0 chr1 13993904 13994048 -268199616 + AluSg/x SINE Alu 201 344 0 5548 148 40 32 chr1 13994051 13995370 -268198294 + Ricksha DNA DNA 1889 3254 -10 216 97 0 0 chr1 13996072 13996103 -268197561 + (T)n Simple_repeat Simple_repeat 1 31 0 2021 182 45 26 chr1 13997249 13997673 -268195991 - MSTB1 LTR MaLR 0 432 1 370 349 30 0 chr1 13997836 13997968 -268195696 - L2 LINE L2 0 3272 3137 2526 52 0 19 chr1 13998068 13998376 -268195288 + AluY SINE Alu 1 302 -9 352 274 65 48 chr1 13998387 13998635 -268195029 - L2 LINE L2 -192 3080 2829 905 200 104 18 chr1 13998920 13999140 -268194524 + MLT1A1 LTR MaLR 127 365 0 413 341 81 30 chr1 13999336 13999670 -268193994 + L2 LINE L2 2904 3254 -18 739 237 82 14 chr1 13999931 14000150 -268193514 - MIR SINE MIR 0 262 29 515 200 9 9 chr1 14000742 14000847 -268192817 - L2 LINE L2 0 3313 3209 203 250 0 0 chr1 14001066 14001110 -268192554 + (CA)n Simple_repeat Simple_repeat 2 45 0 209 278 179 20 chr1 14001110 14001261 -268192403 - L2 LINE L2 -91 3222 3048 252 252 47 9 chr1 14001704 14001811 -268191853 + L2 LINE L2 2915 3025 -247 272 279 101 17 chr1 14001895 14002074 -268191590 - L2 LINE L2 -303 3010 2817 226 261 15 85 chr1 14002254 14002338 -268191326 - MIR SINE MIR -35 227 154 2252 114 0 0 chr1 14002338 14002637 -268191027 - AluSx SINE Alu -13 299 1 226 261 15 85 chr1 14002637 14002682 -268190982 - MIR SINE MIR -108 154 107 405 0 0 0 chr1 14003539 14003584 -268190080 + (TG)n Simple_repeat Simple_repeat 2 46 0 658 296 49 16 chr1 14003598 14003845 -268189819 + MIR SINE MIR 1 255 -7 779 233 67 84 chr1 14003890 14004141 -268189523 - L2 LINE L2 -15 3298 3044 1424 208 185 50 chr1 14004141 14004622 -268189042 - MLT1H LTR MaLR -3 546 1 779 233 67 84 chr1 14004622 14005062 -268188602 - L2 LINE L2 -269 3044 2622 188 379 129 0 chr1 14005329 14005453 -268188211 + L2 LINE L2 3098 3237 -35 204 83 0 100 chr1 14005939 14005999 -268187665 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 219 359 0 0 chr1 14006285 14006377 -268187287 - MIR SINE MIR -124 138 47 1179 196 25 49 chr1 14006399 14006725 -268186939 + MER33 DNA MER1_type 7 324 0 309 281 114 0 chr1 14006897 14007011 -268186653 - L1MD3 LINE L1 0 7995 7869 189 328 94 12 chr1 14007261 14007432 -268186232 + MIR SINE MIR 1 185 -77 880 282 215 15 chr1 14008262 14008787 -268184877 + L2 LINE L2 1738 2367 -947 483 266 23 8 chr1 14008826 14008954 -268184710 - L2 LINE L2 0 3313 3184 1873 160 21 59 chr1 14008954 14009329 -268184335 + MLT1C LTR MaLR 1 361 -106 410 339 76 0 chr1 14009329 14009500 -268184164 + L2 LINE L2 2850 3033 -280 299 315 83 0 chr1 14009672 14009780 -268183884 - MIR SINE MIR -75 187 71 489 318 55 18 chr1 14010069 14010286 -268183378 - MIR SINE MIR -1 261 37 216 293 81 40 chr1 14010344 14010443 -268183221 + L3b LINE CR1 1472 1574 -9 513 254 200 66 chr1 14010747 14011231 -268182433 - MLT1H LTR MaLR 0 549 1 198 0 0 0 chr1 14011383 14011405 -268182259 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2551 142 36 5 chr1 14011432 14011847 -268181817 + MSTA LTR MaLR 1 428 0 662 132 0 0 chr1 14012041 14012147 -268181517 - AluY SINE Alu 0 311 206 326 275 106 14 chr1 14012486 14012628 -268181036 + MIR3 SINE MIR 3 157 -51 237 256 0 0 chr1 14012821 14012903 -268180761 + CT-rich Low_complexity Low_complexity 2 83 0 276 278 0 46 chr1 14012926 14013034 -268180630 - MIR SINE MIR -10 252 150 954 285 26 3 chr1 14013041 14013515 -268180149 + LTR33 LTR ERVL 1 512 -9 244 59 0 0 chr1 14013515 14013549 -268180115 - MIR SINE MIR -110 152 119 184 300 20 0 chr1 14013538 14013588 -268180076 + MIR SINE MIR 42 92 -116 * 201 175 25 0 chr1 14013596 14013636 -268180028 + L2 LINE L2 3012 3052 -261 2124 205 44 5 chr1 14013658 14014087 -268179577 - MER68 LTR ERV1 0 562 117 1266 220 130 71 chr1 14014139 14014616 -268179048 + MLT1D LTR MaLR 1 505 0 233 191 22 112 chr1 14014616 14014702 -268178962 - MER68 LTR ERV1 -482 80 3 338 306 27 0 chr1 14014793 14014904 -268178760 - L2 LINE L2 -5 3308 3195 188 343 15 0 chr1 14015355 14015422 -268178242 + L2 LINE L2 3246 3313 0 225 0 0 0 chr1 14015584 14015609 -268178055 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 274 271 75 15 chr1 14017049 14017182 -268176482 + MIR SINE MIR 57 197 -65 2372 88 0 3 chr1 14017625 14017931 -268175733 + AluY SINE Alu 1 305 -6 223 178 0 0 chr1 14018247 14018292 -268175372 + (TA)n Simple_repeat Simple_repeat 1 45 0 252 234 21 69 chr1 14018298 14018443 -268175221 + L1MEd LINE L1 1007 1144 -5061 312 274 10 107 chr1 14018486 14018608 -268175056 + L1MEd LINE L1 1148 1245 -4960 1794 166 24 0 chr1 14018608 14018897 -268174767 + AluJb SINE Alu 9 304 -8 312 274 10 107 chr1 14018897 14018971 -268174693 + L1MEd LINE L1 1245 1325 -4880 334 296 47 17 chr1 14019034 14019267 -268174397 + L1MEd LINE L1 1432 1671 -4725 2504 65 0 10 chr1 14019426 14019734 -268173930 + AluY SINE Alu 1 305 -6 1140 281 66 19 chr1 14019754 14020504 -268173160 + L1MEd LINE L1 1918 2658 -3557 600 253 51 51 chr1 14020537 14020790 -268172874 - MLT1G LTR MaLR -187 403 151 292 292 31 44 chr1 14020791 14021003 -268172661 + MER106B DNA MER1_type 1 211 -25 88 67 0 0 chr1 14021006 14021171 -268172493 + AT_rich Low_complexity Low_complexity 1 165 0 604 227 85 0 chr1 14021174 14021315 -268172349 - MLT1G LTR MaLR -431 159 7 187 318 30 0 chr1 14021693 14021759 -268171905 - MIR SINE MIR -58 150 83 1551 111 4 4 chr1 14022016 14022242 -268171422 - pTR5 LTR ERV1 -2041 397 172 301 224 41 31 chr1 14022245 14022343 -268171321 - LTR30 LTR ERV1 -80 642 544 5481 129 38 71 chr1 14022343 14023508 -268170156 - pTR5 LTR ERV1 -413 2025 742 2439 76 3 0 chr1 14023786 14024089 -268169575 - AluY SINE Alu -7 304 1 569 264 89 29 chr1 14024183 14024429 -268169235 + L1ME LINE L1 5522 5782 -339 204 296 111 0 chr1 14024470 14024551 -268169113 + L2 LINE L2 3171 3260 -12 569 183 0 9 chr1 14024585 14024700 -268168964 - L1MB8 LINE L1 -21 6157 6044 359 87 0 0 chr1 14024833 14024879 -268168785 - MLT2B2 LTR ERVL 0 515 470 832 0 0 48 chr1 14024982 14025087 -268168577 - L1PA3 LINE L1 0 6155 6056 2839 3 0 0 chr1 14025087 14025397 -268168267 + L1PA3 LINE L1 5744 6053 -102 * 2899 177 34 14 chr1 14025393 14025951 -268167713 - L1MB7 LINE L1 -120 6064 5496 532 202 88 9 chr1 14026388 14026502 -268167162 - LTR67 LTR ERVL -3 554 432 2220 54 14 4 chr1 14026939 14027216 -268166448 - L1PA8 LINE L1 -3 6169 5890 1178 180 61 56 chr1 14027270 14027583 -268166081 - MSTD LTR MaLR -3 393 27 1411 210 120 17 chr1 14027583 14027940 -268165724 - MSTD LTR MaLR -2 394 1 1178 180 61 56 chr1 14027940 14027968 -268165696 - MSTD LTR MaLR -369 27 1 370 245 0 41 chr1 14028087 14028185 -268165479 - MLT1J2 LTR MaLR -5 445 352 747 310 10 0 chr1 14028298 14028498 -268165166 - MLT1J2 LTR MaLR -242 208 7 1725 182 109 17 chr1 14028695 14029053 -268164611 - MSTD LTR MaLR -2 394 4 303 308 46 15 chr1 14029357 14029487 -268164177 - L2 LINE L2 0 3313 3180 295 243 14 0 chr1 14029801 14029875 -268163789 + MER69 DNA AcHobo 2082 2156 -370 2445 231 10 20 chr1 14029875 14030471 -268163193 + L1ME2 LINE L1 5565 6154 -10 274 197 105 13 chr1 14030716 14030792 -268162872 - MLT1H LTR MaLR -14 535 453 1704 208 2 46 chr1 14030877 14031053 -268162611 + MER63B DNA MER1_type 1 183 -879 1384 68 45 0 chr1 14031053 14031229 -268162435 + L1PA7 LINE L1 5968 6151 -3 1704 208 2 46 chr1 14031229 14031465 -268162199 + MER63B DNA MER1_type 183 395 -41 229 328 115 0 chr1 14031946 14032068 -268161596 + L2 LINE L2 3137 3272 0 656 304 69 50 chr1 14032809 14033069 -268160595 + MLT1I LTR MaLR 68 332 -77 249 297 29 73 chr1 14033323 14033569 -268160095 - L2 LINE L2 -2 3311 3077 199 258 0 16 chr1 14034213 14034275 -268159389 - MIR SINE MIR -57 151 91 353 292 86 109 chr1 14034283 14034622 -268159042 - L2 LINE L2 -9 3263 2933 252 0 0 0 chr1 14034651 14034679 -268158985 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1570 258 98 15 chr1 14034830 14035443 -268158221 + L1ME3A LINE L1 3966 4629 -1517 1261 82 0 0 chr1 14035451 14035609 -268158055 + MLT2A1 LTR ERVL 206 363 -81 27152 135 13 20 chr1 14035679 14036930 -268156734 + L1PA8A LINE L1 3 1261 -5185 252 111 0 0 chr1 14036930 14036975 -268156689 + (CAA)n Simple_repeat Simple_repeat 2 46 0 27152 135 13 20 chr1 14036975 14038847 -268154817 + L1PA8A LINE L1 1261 3144 -3302 2077 139 3 3 chr1 14038847 14039157 -268154507 + AluSg SINE Alu 1 310 0 27152 135 13 20 chr1 14039157 14040562 -268153102 + L1PA8A LINE L1 3144 4557 -1889 2753 13 0 0 chr1 14040562 14040861 -268152803 - AluYa5 SINE Alu -12 299 1 27152 135 13 20 chr1 14040861 14042047 -268151617 + L1PA8A LINE L1 4557 5715 -731 2778 89 20 0 chr1 14042047 14042395 -268151269 + THE1A LTR MaLR 1 355 0 27152 135 13 20 chr1 14042395 14043123 -268150541 + L1PA8A LINE L1 5715 6446 0 1610 254 46 55 chr1 14043126 14044334 -268149330 + L1ME3A LINE L1 4623 5816 -354 763 186 12 47 chr1 14044339 14044490 -268149174 + L1ME3A LINE L1 5997 6143 -27 2686 115 57 34 chr1 14044490 14044908 -268148756 + MSTC LTR MaLR 1 428 0 763 186 12 47 chr1 14044908 14044928 -268148736 + L1ME3A LINE L1 6143 6162 -8 347 331 135 30 chr1 14044995 14045366 -268148298 - L2 LINE L2 -665 2649 2240 707 203 25 6 chr1 14045815 14045978 -268147686 - L1 LINE L1 -874 5272 5107 1205 170 81 24 chr1 14045987 14046234 -268147430 - MSTB LTR MaLR -3 423 163 4928 168 24 14 chr1 14046235 14047187 -268146477 - L1 LINE L1 -1101 5045 4084 340 339 53 12 chr1 14047629 14047800 -268145864 + MIR3 SINE MIR 12 189 -19 224 337 74 34 chr1 14048266 14048441 -268145223 - L2 LINE L2 -10 3303 3122 735 176 22 140 chr1 14048505 14048565 -268145099 - MIR SINE MIR -35 227 162 4225 151 20 22 chr1 14048565 14049299 -268144365 - L1MB3 LINE L1 -1 6182 5450 735 176 22 140 chr1 14049299 14049460 -268144204 - MIR SINE MIR -100 162 32 212 185 15 62 chr1 14050747 14050812 -268142852 + CT-rich Low_complexity Low_complexity 4 65 0 395 329 87 7 chr1 14050971 14051194 -268142470 + L2 LINE L2 2762 2998 -315 225 272 37 12 chr1 14051281 14051362 -268142302 - L3 LINE CR1 -120 1457 1375 810 201 80 20 chr1 14051389 14051647 -268142017 + MIR SINE MIR 6 254 -8 779 249 100 17 chr1 14051691 14052151 -268141513 + MER20B DNA MER1_type 1 543 -240 1562 151 26 79 chr1 14052312 14052616 -268141048 + AluSg SINE Alu 1 288 -22 267 191 32 16 chr1 14052699 14052762 -268140902 + MER20B DNA MER1_type 707 770 -13 518 266 20 64 chr1 14052812 14053015 -268140649 - L3 LINE CR1 -287 1290 1097 805 210 28 23 chr1 14054277 14054453 -268139211 + MER58 DNA MER1_type 1 177 -164 1541 51 0 0 chr1 14055247 14055425 -268138239 - AluSq SINE Alu 0 313 136 924 89 0 0 chr1 14055425 14055537 -268138127 + AluSq/x SINE Alu 18 129 -183 243 352 41 28 chr1 14055551 14055696 -268137968 - MIR SINE MIR -88 174 28 220 139 0 0 chr1 14056189 14056225 -268137439 - MIR SINE MIR -114 148 113 195 233 23 0 chr1 14057198 14057241 -268136423 - L2 LINE L2 -11 3261 3218 241 273 91 20 chr1 14057303 14057402 -268136262 - MIR SINE MIR -149 113 8 657 212 60 0 chr1 14057724 14057875 -268135789 - MIR SINE MIR -1 261 102 2963 170 13 31 chr1 14058263 14058811 -268134853 + MLT2B3 LTR ERVL 1 538 -16 181 206 16 79 chr1 14059121 14059184 -268134480 - L2 LINE L2 -216 3056 2998 3774 133 21 4 chr1 14059582 14060100 -268133564 - MER1A DNA MER1_type 0 527 1 1091 179 18 46 chr1 14060845 14061063 -268132601 - MER20B DNA MER1_type -7 212 1 370 243 199 15 chr1 14061088 14061224 -268132440 + MER5A DNA MER1_type 23 183 -6 315 289 218 13 chr1 14061248 14061404 -268132260 - MER5A DNA MER1_type 0 189 2 408 104 0 0 chr1 14062265 14062332 -268131332 + (A)n Simple_repeat Simple_repeat 1 67 0 21 57 0 0 chr1 14062367 14062402 -268131262 + AT_rich Low_complexity Low_complexity 1 35 0 372 306 29 40 chr1 14062607 14062780 -268130884 + MIR SINE MIR 14 184 -78 1689 166 9 31 chr1 14062812 14063131 -268130533 + AluJo SINE Alu 1 312 0 452 288 151 27 chr1 14063131 14063350 -268130314 - MIR SINE MIR -9 253 8 398 303 54 11 chr1 14063944 14064129 -268129535 + L1ME4a LINE L1 5677 5869 -252 378 275 128 27 chr1 14064551 14064700 -268128964 + MER5B DNA MER1_type 5 168 -10 253 232 89 0 chr1 14065160 14065216 -268128448 + MER5A DNA MER1_type 7 67 -122 245 246 16 0 chr1 14065304 14065365 -268128299 + MER5A DNA MER1_type 128 189 0 1088 192 10 0 chr1 14065373 14065571 -268128093 + MER3 DNA MER1_type 1 200 -9 21 71 0 0 chr1 14065941 14065983 -268127681 + AT_rich Low_complexity Low_complexity 1 42 0 312 215 19 56 chr1 14065984 14066091 -268127573 + L2 LINE L2 3203 3305 -8 421 223 115 31 chr1 14066092 14066222 -268127442 - MIR SINE MIR -113 149 9 414 261 200 0 chr1 14066406 14066521 -268127143 - MER5A DNA MER1_type -6 183 46 273 335 84 44 chr1 14066549 14066824 -268126840 - L2 LINE L2 -89 3183 2898 21 57 0 0 chr1 14067188 14067223 -268126441 + AT_rich Low_complexity Low_complexity 1 35 0 9027 21 0 0 chr1 14068534 14070068 -268123596 - L1PA2 LINE L1 -282 5873 4340 2758 26 0 0 chr1 14070068 14070369 -268123295 + L1PA2 LINE L1 5848 6151 -4 396 40 0 0 chr1 14070407 14070457 -268123207 + (CA)n Simple_repeat Simple_repeat 2 51 0 935 257 23 35 chr1 14071975 14072232 -268121432 - MIR SINE MIR 0 262 9 300 381 38 12 chr1 14072267 14072427 -268121237 + L2 LINE L2 2541 2704 -610 184 222 0 44 chr1 14073393 14073438 -268120226 + L2 LINE L2 449 491 -2823 1889 139 3 50 chr1 14075231 14075554 -268118110 - AluSx SINE Alu -4 308 1 455 268 43 53 chr1 14075775 14075984 -268117680 - L2 LINE L2 -212 3060 2854 867 117 17 0 chr1 14076320 14076440 -268117224 + FRAM SINE Alu 23 144 -32 2403 71 0 0 chr1 14076549 14076857 -268116807 - AluSg SINE Alu 0 308 1 518 314 15 15 chr1 14076864 14077068 -268116596 - L1ME4a LINE L1 -174 5947 5744 357 159 0 0 chr1 14077786 14077849 -268115815 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 949 297 128 20 chr1 14077852 14078306 -268115358 - L2 LINE L2 0 3313 2811 208 270 151 56 chr1 14078537 14078663 -268115001 + MIR3 SINE MIR 17 154 -54 2254 102 0 23 chr1 14078663 14078968 -268114696 + AluSc SINE Alu 1 298 -11 306 164 0 0 chr1 14079815 14079870 -268113794 + (TG)n Simple_repeat Simple_repeat 2 56 0 210 37 0 0 chr1 14079870 14079897 -268113767 + (GA)n Simple_repeat Simple_repeat 1 27 0 2263 89 0 10 chr1 14080259 14080609 -268113055 + AluSx SINE Alu 1 312 0 2761 238 140 39 chr1 14080739 14082014 -268111650 - HAL1 LINE L1 0 2507 1104 525 279 48 69 chr1 14082019 14082352 -268111312 - HAL1 LINE L1 -2006 501 176 4027 135 42 54 chr1 14082692 14083435 -268110229 - L1MB3 LINE L1 0 6183 5450 494 250 18 61 chr1 14083486 14083650 -268110014 - MIR SINE MIR -50 212 56 422 250 83 22 chr1 14083651 14083831 -268109833 - MLT1F1 LTR MaLR -6 561 371 621 271 15 50 chr1 14084159 14084358 -268109306 + MIR SINE MIR 59 250 -12 195 42 0 0 chr1 14084363 14084387 -268109277 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1228 254 100 58 chr1 14084519 14085050 -268108614 + MLT1H1 LTR MaLR 1 553 -2 269 333 13 0 chr1 14085132 14085210 -268108454 + MIR SINE MIR 1 79 -183 276 222 0 16 chr1 14085248 14085311 -268108353 + MIR SINE MIR 175 236 -26 474 260 72 50 chr1 14085442 14085623 -268108041 + MIR SINE MIR 63 247 -15 275 191 15 0 chr1 14086823 14086891 -268106773 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 2257 109 16 0 chr1 14087368 14087672 -268105992 + AluSx SINE Alu 3 338 0 202 74 0 0 chr1 14087672 14087699 -268105965 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 570 224 66 56 chr1 14087792 14087988 -268105676 + MIR SINE MIR 31 228 -34 2311 122 0 3 chr1 14088172 14088484 -268105180 - AluSx SINE Alu -1 311 1 2109 21 0 0 chr1 14088536 14088772 -268104892 - L1PA4 LINE L1 -487 5668 5433 4190 25 4 2 chr1 14088772 14089255 -268104409 + L1PA4 LINE L1 5668 6153 -2 185 279 13 0 chr1 14089396 14089475 -268104189 + CT-rich Low_complexity Low_complexity 4 83 0 200 298 86 68 chr1 14089495 14089787 -268103877 - L2 LINE L2 -10 3262 2966 221 250 0 0 chr1 14089793 14089841 -268103823 + (TG)n Simple_repeat Simple_repeat 1 48 0 201 343 0 0 chr1 14089862 14090028 -268103636 + (TG)n Simple_repeat Simple_repeat 1 166 0 1681 180 70 17 chr1 14090116 14090472 -268103192 - THE1C LTR MaLR 0 375 1 1900 206 64 9 chr1 14090738 14091174 -268102490 - MER31B LTR ERV1 0 466 7 1871 134 47 0 chr1 14091350 14091625 -268102039 + AluJb SINE Alu 1 288 -24 318 252 17 42 chr1 14092527 14092646 -268101018 - L2 LINE L2 -269 3044 2929 1652 223 100 83 chr1 14092703 14093282 -268100382 + MLT1E LTR MaLR 1 589 -4 576 210 17 17 chr1 14093383 14093502 -268100162 + ORSL DNA AcHobo 1 119 -156 2108 172 23 0 chr1 14093506 14093860 -268099804 - Tigger2 DNA MER2_type -7 2711 2350 621 158 18 104 chr1 14093844 14094008 -268099656 - Tigger2 DNA MER2_type -2568 150 1 * 419 179 19 57 chr1 14094054 14094160 -268099504 + ORSL DNA AcHobo 172 273 -2 211 211 0 0 chr1 14094501 14094539 -268099125 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 884 178 6 25 chr1 14094704 14094861 -268098803 - MER20 DNA MER1_type -7 212 59 673 286 6 0 chr1 14094914 14095089 -268098575 + MIR SINE MIR 76 251 -11 2277 200 74 4 chr1 14095932 14096403 -268097261 + MLT1D LTR MaLR 1 504 -1 340 260 63 39 chr1 14096407 14096534 -268097130 - MIR SINE MIR -61 147 18 1247 125 0 0 chr1 14096674 14096842 -268096822 + AluJb SINE Alu 134 301 -11 2296 117 0 0 chr1 14096905 14097212 -268096452 - AluSg SINE Alu -3 307 1 207 244 0 0 chr1 14097383 14097424 -268096240 + L2 LINE L2 3262 3302 -11 388 171 145 34 chr1 14097554 14097671 -268095993 + L2 LINE L2 3184 3313 0 247 366 11 0 chr1 14098273 14098366 -268095298 - L2 LINE L2 -6 3266 3173 472 297 53 19 chr1 14098521 14098730 -268094934 - L2 LINE L2 -227 3086 2871 2399 190 22 71 chr1 14098890 14099470 -268094194 - MLT2B3 LTR ERVL -2 552 1 2450 70 3 0 chr1 14099864 14100166 -268093498 + AluY SINE Alu 3 305 -6 425 303 9 0 chr1 14100536 14100645 -268093019 + MER94 DNA DNA 24 133 -1 210 247 27 14 chr1 14100718 14100791 -268092873 + MIR SINE MIR 30 103 -105 257 291 22 99 chr1 14101067 14101249 -268092415 - L2 LINE L2 -218 3054 2887 406 322 35 14 chr1 14101401 14101544 -268092120 + L2 LINE L2 3127 3272 0 365 312 54 51 chr1 14102353 14102648 -268091016 - L2 LINE L2 -1 3312 3017 502 207 35 59 chr1 14103078 14103247 -268090417 + MER113 DNA MER1_type? 179 343 -178 1789 153 38 0 chr1 14103441 14103728 -268089936 + THE1B LTR MaLR 1 298 -66 1569 100 0 9 chr1 14103728 14103938 -268089726 - AluSg1 SINE Alu -44 265 58 226 276 17 0 chr1 14104226 14104284 -268089380 + Zaphod DNA AcHobo 9 67 -3964 392 229 12 0 chr1 14104823 14104906 -268088758 + MER115 DNA AcHobo 609 692 -1 3359 128 25 35 chr1 14105616 14106180 -268087484 - L1PB3 LINE L1 -23 6131 5574 656 269 13 70 chr1 14106729 14107045 -268086619 + L2 LINE L2 3015 3312 -1 835 263 160 38 chr1 14107454 14107903 -268085761 - MLT1K LTR MaLR -9 579 76 321 320 48 34 chr1 14108192 14108339 -268085325 - MER5B DNA MER1_type -29 149 1 2290 99 3 3 chr1 14108574 14108876 -268084788 - AluSg SINE Alu -8 302 1 2322 97 3 10 chr1 14109668 14109979 -268083685 + AluSc SINE Alu 1 309 0 282 309 49 8 chr1 14110667 14110790 -268082874 - MIR SINE MIR -102 160 33 321 356 15 8 chr1 14111775 14111907 -268081757 + MIR SINE MIR 18 150 -112 254 71 0 24 chr1 14111915 14111957 -268081707 + (ATG)n Simple_repeat Simple_repeat 2 42 0 235 289 74 16 chr1 14112218 14112339 -268081325 + MIR SINE MIR 63 190 -72 416 281 115 10 chr1 14112430 14112622 -268081042 + MIR SINE MIR 22 233 -29 4518 55 2 0 chr1 14113185 14113734 -268079930 - L1PA7 LINE L1 -5 6149 5600 1840 257 114 25 chr1 14113833 14114464 -268079200 - MER115 DNA AcHobo -6 687 1 524 271 26 7 chr1 14114542 14114697 -268078967 + MIR3 SINE MIR 28 185 -23 1065 185 16 0 chr1 14115523 14115619 -268078045 - MER20 DNA MER1_type -32 187 94 2193 136 79 57 chr1 14115619 14115779 -268077885 + MLT1C LTR MaLR 1 156 -311 2412 79 0 0 chr1 14115779 14116069 -268077595 + AluY SINE Alu 1 290 -21 2193 136 79 57 chr1 14116069 14116365 -268077299 + MLT1C LTR MaLR 156 467 0 1065 185 16 0 chr1 14116365 14116452 -268077212 - MER20 DNA MER1_type -125 94 1 679 233 0 0 chr1 14116455 14116584 -268077080 + MER58B DNA MER1_type 213 341 0 1619 231 74 14 chr1 14117425 14117858 -268075806 + MLT1C LTR MaLR 1 459 -8 205 313 16 16 chr1 14118088 14118152 -268075512 + L2 LINE L2 3199 3262 -10 * 280 304 0 0 chr1 14118147 14118226 -268075438 + MIR SINE MIR 80 158 -104 1385 141 0 60 chr1 14118246 14118467 -268075197 - MLT1A1 LTR MaLR 0 365 159 2288 97 7 3 chr1 14118467 14118765 -268074899 - AluSx SINE Alu -13 299 1 1385 141 0 60 chr1 14118765 14118790 -268074874 - MLT1A1 LTR MaLR -206 159 134 2498 138 18 39 chr1 14118790 14119028 -268074636 - MSTB LTR MaLR 0 426 200 3602 104 4 12 chr1 14119028 14119546 -268074118 - MER75 DNA T2_type 0 514 1 2498 138 18 39 chr1 14119546 14119742 -268073922 - MSTB LTR MaLR -226 200 1 797 185 22 0 chr1 14119742 14119877 -268073787 - MLT1A1 LTR MaLR -227 138 1 * 1339 242 87 34 chr1 14119877 14120371 -268073293 - MER34B LTR ERV1 -13 543 1 225 208 19 0 chr1 14120371 14120424 -268073240 + MIR SINE MIR 155 208 -54 901 241 14 5 chr1 14121222 14121429 -268072235 + MER58 DNA MER1_type 16 224 -2196 1710 134 3 75 chr1 14121520 14121854 -268071810 - AluJb SINE Alu 0 312 1 1520 56 17 0 chr1 14122693 14122872 -268070792 + AluY SINE Alu 1 182 -129 465 255 87 39 chr1 14123132 14123340 -268070324 + MIR SINE MIR 32 249 -13 267 244 154 0 chr1 14123652 14123730 -268069934 - L2 LINE L2 -1 3312 3223 377 313 122 15 chr1 14123788 14124123 -268069541 - L2 LINE L2 -601 2713 2343 329 254 0 9 chr1 14124479 14124493 -268069171 + (TATG)n Simple_repeat Simple_repeat 3 16 -95 1502 29 0 0 chr1 14124493 14124667 -268068997 + L1PA4 LINE L1 5977 6150 -5 329 254 0 9 chr1 14124667 14124762 -268068902 + (TATG)n Simple_repeat Simple_repeat 16 111 0 5766 214 70 39 chr1 14125045 14125980 -268067684 - L1ME1 LINE L1 -4 6231 5326 1707 117 8 19 chr1 14125980 14126245 -268067419 - L1PA10 LINE L1 -12 6156 5895 5766 214 70 39 chr1 14126245 14127952 -268065712 - L1ME1 LINE L1 -909 5326 3495 3535 244 48 47 chr1 14127950 14128792 -268064872 - L1ME1 LINE L1 -3033 3182 2342 * 727 151 32 8 chr1 14128792 14128918 -268064746 - L1MC1 LINE L1 -9 6324 6196 3535 244 48 47 chr1 14128918 14130387 -268063277 - L1ME1 LINE L1 -3873 2342 872 1246 279 55 69 chr1 14130394 14130611 -268063053 - L1ME1 LINE L1 -5760 636 417 2435 83 7 0 chr1 14130611 14130913 -268062751 + AluSg SINE Alu 1 304 -6 1246 279 55 69 chr1 14130913 14131319 -268062345 - L1ME1 LINE L1 -5979 417 22 2456 71 7 3 chr1 14131862 14132170 -268061494 - AluY SINE Alu -2 309 1 33 43 0 0 chr1 14132205 14132252 -268061412 + AT_rich Low_complexity Low_complexity 1 47 0 236 310 0 0 chr1 14132311 14132398 -268061266 - L1MC4 LINE L1 -1342 6700 6614 2679 177 68 29 chr1 14133457 14134005 -268059659 - MER39 LTR ERV1 -63 644 76 623 299 45 37 chr1 14134033 14134388 -268059276 + L1MC4a LINE L1 5524 5881 -1927 446 214 104 35 chr1 14134834 14135007 -268058657 - MER20 DNA MER1_type -34 185 1 2503 230 60 5 chr1 14135178 14135731 -268057933 - MLT1G LTR MaLR -5 585 3 394 153 42 0 chr1 14135778 14135850 -268057814 - MER116 DNA Mariner -4 76 2 32 57 0 0 chr1 14135932 14135985 -268057679 + AT_rich Low_complexity Low_complexity 1 53 0 291 119 0 0 chr1 14136360 14136402 -268057262 - MIR SINE MIR -6 256 215 291 292 51 25 chr1 14136684 14136821 -268056843 - MER5A DNA MER1_type -26 163 13 216 308 64 0 chr1 14136941 14137019 -268056645 - L2 LINE L2 -626 2688 2606 220 316 0 0 chr1 14137049 14137106 -268056558 - L2 LINE L2 -671 2643 2587 313 214 112 11 chr1 14137154 14137243 -268056421 + MLT1J LTR MaLR 214 311 -200 498 232 14 51 chr1 14137771 14137909 -268055755 - MIR SINE MIR -66 196 64 2536 152 72 77 chr1 14139079 14139693 -268053971 + LTR36 LTR ERV1 1 611 0 242 225 0 14 chr1 14139693 14139756 -268053908 + CT-rich Low_complexity Low_complexity 9 72 0 346 291 70 20 chr1 14139854 14140053 -268053611 + LTR33 LTR ERVL 313 521 0 3164 181 12 7 chr1 14140112 14140550 -268053114 - MER68 LTR ERV1 0 562 119 2189 111 62 31 chr1 14140550 14140903 -268052761 + THE1B LTR MaLR 1 364 0 3164 181 12 7 chr1 14140903 14141023 -268052641 - MER68 LTR ERV1 -443 119 1 380 298 57 66 chr1 14141038 14141266 -268052398 - MIR SINE MIR -7 255 30 345 328 69 0 chr1 14141322 14141438 -268052226 + L1ME4a LINE L1 5994 6117 -4 1582 174 65 78 chr1 14142494 14142694 -268050970 - MLT1B LTR MaLR -10 380 186 1800 134 7 39 chr1 14142694 14143000 -268050664 - AluSx SINE Alu -16 296 1 1582 174 65 78 chr1 14143000 14143184 -268050480 - MLT1B LTR MaLR -204 186 1 1700 170 89 77 chr1 14143184 14143666 -268049998 - MLT1D LTR MaLR -17 488 1 226 254 0 56 chr1 14145132 14145203 -268048461 - L2 LINE L2 -335 2978 2912 205 156 0 0 chr1 14145821 14145853 -268047811 + (CAA)n Simple_repeat Simple_repeat 2 33 0 842 112 0 41 chr1 14146710 14146879 -268046785 + (TCCC)n Simple_repeat Simple_repeat 3 164 0 272 68 0 23 chr1 14147143 14147187 -268046477 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 323 248 111 46 chr1 14147646 14147799 -268045865 + MIR3 SINE MIR 41 203 -5 567 331 58 58 chr1 14147836 14148247 -268045417 + L2 LINE L2 2857 3267 -5 213 263 50 61 chr1 14150216 14150315 -268043349 - MIR SINE MIR -32 230 133 1188 181 45 67 chr1 14150442 14150773 -268042891 + MER33 DNA MER1_type 1 324 0 297 382 10 0 chr1 14150879 14150981 -268042683 - L2 LINE L2 0 3272 3170 2253 98 0 0 chr1 14151512 14151817 -268041847 - AluSg SINE Alu -5 305 1 227 273 162 10 chr1 14152013 14152112 -268041552 + L2 LINE L2 3162 3275 -38 347 229 0 73 chr1 14152319 14152428 -268041236 + MLT1E1 LTR MaLR 57 157 -497 344 167 218 19 chr1 14152412 14152534 -268041130 + MLT1E1 LTR MaLR 118 319 -335 * 228 246 18 0 chr1 14152627 14152684 -268040980 + L2 LINE L2 3199 3256 -16 468 290 14 28 chr1 14153341 14153486 -268040178 - MIR SINE MIR -112 150 8 194 307 114 0 chr1 14153484 14153572 -268040092 + MIR SINE MIR 49 146 -62 * 314 315 161 7 chr1 14154540 14154689 -268038975 - MIR SINE MIR -2 260 89 1505 204 28 37 chr1 14154804 14155085 -268038579 - MLT1A2 LTR MaLR 0 374 92 2048 139 106 6 chr1 14155085 14155416 -268038248 + THE1B LTR MaLR 1 364 0 11730 102 6 1 chr1 14155416 14156988 -268036676 + THE1B-int LTR MaLR 1 1580 0 1952 149 98 15 chr1 14156988 14157324 -268036340 + THE1B LTR MaLR 1 364 0 1505 204 28 37 chr1 14157324 14157393 -268036271 - MLT1A2 LTR MaLR -279 95 25 435 281 83 46 chr1 14157422 14157639 -268036025 + MIR SINE MIR 32 256 -6 386 331 29 14 chr1 14158462 14158601 -268035063 - MIR3 SINE MIR -8 200 60 233 29 0 29 chr1 14158803 14158838 -268034826 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 533 233 170 0 chr1 14159633 14159792 -268033872 - MIR SINE MIR 0 262 77 3083 85 19 5 chr1 14159843 14160265 -268033399 - MSTA LTR MaLR 0 428 1 552 310 81 22 chr1 14160557 14160880 -268032784 + MLT1K LTR MaLR 85 426 -162 571 258 15 0 chr1 14161193 14161325 -268032339 - MIR SINE MIR -120 142 9 1188 250 176 33 chr1 14161346 14162088 -268031576 - L2 LINE L2 -10 3303 2432 267 331 130 19 chr1 14162198 14162352 -268031312 - MIR SINE MIR -19 243 73 589 186 20 0 chr1 14164013 14164115 -268029549 - U6 snRNA snRNA -1 106 3 800 167 0 69 chr1 14164881 14165055 -268028609 - MER20 DNA MER1_type 0 219 58 890 247 108 53 chr1 14165092 14165529 -268028135 + MLT1C LTR MaLR 7 467 0 291 342 30 40 chr1 14165665 14165966 -268027698 - L2 LINE L2 -401 2913 2616 229 269 29 67 chr1 14166168 14166272 -268027392 - MIR SINE MIR -65 143 44 375 278 12 87 chr1 14166332 14166534 -268027130 - MIR SINE MIR -70 192 19 2140 113 0 0 chr1 14166603 14166903 -268026761 + AluSx SINE Alu 1 300 -12 1805 172 30 57 chr1 14168128 14168529 -268025135 - MLT1B LTR MaLR 0 390 1 183 282 48 73 chr1 14168790 14168914 -268024750 + L2 LINE L2 3158 3278 -35 191 114 23 0 chr1 14169535 14169579 -268024085 + GA-rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr1 14170194 14170218 -268023446 + AT_rich Low_complexity Low_complexity 1 24 0 1854 161 151 19 chr1 14170711 14171089 -268022575 - MSTA LTR MaLR 0 428 1 371 330 5 91 chr1 14171193 14171402 -268022262 - L3 LINE CR1 -17 1560 1370 516 258 72 53 chr1 14171406 14171615 -268022049 - MLT1K LTR MaLR -1 587 375 495 320 207 4 chr1 14171776 14172032 -268021632 - LTR16C LTR ERVL -26 465 158 412 328 55 16 chr1 14172233 14172416 -268021248 - MLT1K LTR MaLR -388 200 11 416 279 25 50 chr1 14172433 14172594 -268021070 - L3 LINE CR1 -209 1368 1212 2114 97 0 0 chr1 14172866 14173220 -268020444 + AluSc SINE Alu 1 354 0 262 284 101 18 chr1 14173299 14173408 -268020256 + MLT1K LTR MaLR 2 119 -469 414 322 188 10 chr1 14174136 14174344 -268019320 - MIR SINE MIR -11 251 7 405 141 0 0 chr1 14174749 14174820 -268018844 + (CA)n Simple_repeat Simple_repeat 1 71 0 571 90 0 0 chr1 14174826 14174904 -268018760 - MADE1 DNA Mariner 0 80 3 413 310 17 58 chr1 14176065 14176239 -268017425 + MIR SINE MIR 84 250 -12 841 340 4 0 chr1 14177241 14177476 -268016188 + MIR SINE MIR 16 251 -11 1289 82 0 0 chr1 14177481 14177651 -268016013 - AluSp SINE Alu -6 307 138 188 313 0 0 chr1 14177651 14177699 -268015965 - L3 LINE CR1 -158 1419 1372 208 279 139 0 chr1 14177758 14177844 -268015820 + MIR SINE MIR 117 214 -48 234 0 0 0 chr1 14177862 14177888 -268015776 + (TG)n Simple_repeat Simple_repeat 2 27 0 693 294 64 11 chr1 14177903 14178314 -268015350 - MLT1L LTR MaLR -7 608 144 273 313 0 15 chr1 14179559 14179626 -268014038 + MIR3 SINE MIR 112 177 -31 494 31 16 0 chr1 14179707 14179771 -268013893 + (TG)n Simple_repeat Simple_repeat 2 66 0 809 307 15 38 chr1 14179914 14180178 -268013486 + MIR SINE MIR 4 261 -1 21 0 0 0 chr1 14181012 14181033 -268012631 + AT_rich Low_complexity Low_complexity 1 21 0 213 322 0 0 chr1 14181843 14181902 -268011762 + CT-rich Low_complexity Low_complexity 3 61 0 1612 269 69 64 chr1 14183018 14183496 -268010168 - HAL1 LINE L1 0 2507 2022 1769 183 0 0 chr1 14183496 14183797 -268009867 - AluJb SINE Alu -11 301 1 1612 269 69 64 chr1 14183797 14184178 -268009486 - HAL1 LINE L1 -485 2022 1644 956 109 0 0 chr1 14184240 14184368 -268009296 - FLAM_C SINE Alu -5 128 1 2122 141 64 38 chr1 14184369 14184788 -268008876 - MSTB1 LTR MaLR 0 432 3 1899 137 3 7 chr1 14184940 14185232 -268008432 + AluJo SINE Alu 1 291 -21 189 94 0 0 chr1 14185233 14185265 -268008399 + (CA)n Simple_repeat Simple_repeat 2 33 0 1939 124 39 0 chr1 14185366 14185649 -268008015 - AluSx SINE Alu -18 294 1 550 279 103 69 chr1 14185802 14186032 -268007632 - HAL1 LINE L1 -585 1922 1701 2439 83 0 3 chr1 14186032 14186346 -268007318 + AluSq SINE Alu 1 313 0 550 279 103 69 chr1 14186346 14186620 -268007044 - HAL1 LINE L1 -806 1701 1401 2072 169 44 46 chr1 14186655 14187088 -268006576 + Tigger2a DNA MER2_type 3 434 0 424 278 32 137 chr1 14187089 14187291 -268006373 + MIR SINE MIR 11 178 -84 2301 82 0 13 chr1 14187291 14187597 -268006067 + AluSc SINE Alu 1 302 -7 424 278 32 137 chr1 14187597 14187671 -268005993 + MIR SINE MIR 178 258 -4 1846 121 81 4 chr1 14187719 14187998 -268005666 + AluJb SINE Alu 3 296 -16 678 283 76 64 chr1 14188106 14188608 -268005056 - HAL1 LINE L1 -1319 1188 681 324 103 0 0 chr1 14188813 14188871 -268004793 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 2195 111 6 19 chr1 14188871 14189186 -268004478 - AluY SINE Alu 0 311 1 304 246 14 0 chr1 14189892 14189961 -268003703 - MIR SINE MIR -61 147 78 268 246 118 9 chr1 14190630 14190740 -268002924 - L1ME4a LINE L1 -7 6114 5993 209 304 9 80 chr1 14191306 14191418 -268002246 - L2 LINE L2 -33 3280 3177 21226 159 22 15 chr1 14191812 14193273 -268000391 - L1MA2 LINE L1 0 7723 6274 2468 81 0 10 chr1 14193273 14193581 -268000083 + AluSp SINE Alu 2 306 -7 21226 159 22 15 chr1 14193581 14194730 -267998934 - L1MA2 LINE L1 -1449 6274 5135 393 22 0 0 chr1 14194730 14194776 -267998888 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 21226 159 22 15 chr1 14194776 14195419 -267998245 - L1MA2 LINE L1 -2588 5135 4498 2038 155 0 0 chr1 14195419 14195716 -267997948 - AluSx SINE Alu -2 310 14 21226 159 22 15 chr1 14195716 14197485 -267996179 - L1MA2 LINE L1 -3225 4498 2743 2141 130 49 32 chr1 14197485 14197854 -267995810 - THE1C LTR MaLR 0 375 1 21226 159 22 15 chr1 14197854 14200468 -267993196 - L1MA2 LINE L1 -4980 2743 16 2312 250 17 11 chr1 14200968 14201500 -267992164 - MLT1F LTR MaLR -2 540 6 451 337 44 77 chr1 14201533 14202186 -267991478 - MLT1F-int LTR MaLR -41 1330 699 2438 93 0 0 chr1 14202312 14202623 -267991041 - AluY SINE Alu 0 311 1 549 305 19 0 chr1 14202705 14202859 -267990805 - MLT1F-int LTR MaLR -770 601 445 4452 140 38 4 chr1 14202866 14203560 -267990104 - MER50 LTR ERV1 -17 717 1 393 266 28 64 chr1 14203661 14203879 -267989785 - MLT1F-int LTR MaLR -1161 210 1 1328 253 104 10 chr1 14203879 14204234 -267989430 - MLT1F LTR MaLR 0 542 145 246 32 0 0 chr1 14204234 14204265 -267989399 + (TG)n Simple_repeat Simple_repeat 2 32 0 1328 253 104 10 chr1 14204265 14204304 -267989360 - MLT1F LTR MaLR -397 145 111 2356 100 6 0 chr1 14204307 14204618 -267989046 - AluSp SINE Alu 0 313 1 1988 113 8 0 chr1 14205828 14206116 -267987548 + AluSx SINE Alu 17 306 0 390 239 61 1 chr1 14206153 14206262 -267987402 + MIR SINE MIR 38 150 -61 1937 145 10 0 chr1 14207220 14207523 -267986141 + AluSq SINE Alu 1 306 -7 435 294 55 12 chr1 14208534 14208697 -267984967 + MIR SINE MIR 80 249 -13 245 240 27 13 chr1 14208868 14208943 -267984721 - MLT1K LTR MaLR -1 587 512 210 143 0 0 chr1 14209068 14209103 -267984561 + (TCCCC)n Simple_repeat Simple_repeat 2 36 0 599 304 36 32 chr1 14209518 14209738 -267983926 - MIR SINE MIR -28 234 14 3272 158 71 34 chr1 14210298 14210508 -267983156 - L1MB5 LINE L1 -6 6168 5967 1990 124 28 0 chr1 14210508 14210791 -267982873 - AluSg SINE Alu -19 291 1 3272 158 71 34 chr1 14210791 14211224 -267982440 - L1MB5 LINE L1 -207 5967 5501 314 266 9 64 chr1 14212190 14212299 -267981365 - L2 LINE L2 -14 3299 3197 1168 227 49 166 chr1 14212336 14212952 -267980712 - MLT1H1 LTR MaLR -7 588 1 813 263 108 32 chr1 14213022 14213300 -267980364 - MLT1K LTR MaLR 0 588 290 288 266 44 80 chr1 14213309 14213422 -267980242 + MLT1K LTR MaLR 237 345 -243 913 257 81 37 chr1 14213471 14213743 -267979921 - MLT1K LTR MaLR -302 286 3 2028 190 71 29 chr1 14213934 14214455 -267979209 - LTR55 LTR ERV -5 543 1 266 314 29 20 chr1 14214544 14214646 -267979018 - MIR SINE MIR -2 260 158 394 322 0 0 chr1 14214676 14214797 -267978867 - MLT1I LTR MaLR -232 177 57 2431 76 0 0 chr1 14214879 14215182 -267978482 - AluY SINE Alu -8 303 1 1673 259 43 42 chr1 14216550 14216664 -267977000 - L1MEc LINE L1 -4308 2088 1976 2175 106 0 0 chr1 14216664 14216946 -267976718 + AluSg SINE Alu 8 289 -21 1673 259 43 42 chr1 14216946 14217456 -267976208 - L1MEc LINE L1 -4420 1976 1463 2346 277 81 55 chr1 14217531 14217710 -267975954 - L1MEc LINE L1 -4930 1466 1293 2259 111 61 25 chr1 14217710 14218072 -267975592 + THE1C LTR MaLR 1 375 0 2346 277 81 55 chr1 14218072 14219289 -267974375 - L1MEc LINE L1 -5103 1293 34 456 231 35 106 chr1 14219474 14219673 -267973991 - L2 LINE L2 -4 3309 3125 357 336 8 16 chr1 14219922 14220044 -267973620 + L2 LINE L2 3140 3260 -12 327 341 17 12 chr1 14223943 14224116 -267969548 + CT-rich Low_complexity Low_complexity 3 176 0 221 200 36 0 chr1 14224165 14224220 -267969444 + CT-rich Low_complexity Low_complexity 4 60 0 254 221 63 63 chr1 14226108 14226203 -267967461 - LTR67 LTR ERVL -4 553 459 1053 201 0 16 chr1 14227374 14227563 -267966101 + MER20 DNA MER1_type 33 218 -1 329 330 0 8 chr1 14227702 14227820 -267965844 - L2 LINE L2 -20 3252 3136 387 0 0 0 chr1 14227974 14228017 -267965647 + (TG)n Simple_repeat Simple_repeat 1 43 0 245 191 79 0 chr1 14229174 14229237 -267964427 - MLT1H LTR MaLR 0 549 482 442 232 155 82 chr1 14229331 14229538 -267964126 - MLT1H LTR MaLR -199 350 129 644 274 48 0 chr1 14230059 14230227 -267963437 - MIR SINE MIR -15 247 72 1241 261 86 0 chr1 14230230 14230556 -267963108 + MLT1H LTR MaLR 1 354 -195 226 227 0 0 chr1 14230655 14230699 -267962965 + MLT1H LTR MaLR 506 549 0 384 239 23 0 chr1 14230745 14230833 -267962831 - MLT1J2 LTR MaLR -356 94 5 281 366 158 14 chr1 14230868 14231373 -267962291 - L2 LINE L2 -513 2801 2224 487 259 56 7 chr1 14231400 14231543 -267962121 - LTR67 LTR ERVL 0 557 408 333 260 0 0 chr1 14231978 14232055 -267961609 + MLT1K LTR MaLR 510 586 -2 1769 183 63 82 chr1 14232571 14232721 -267960943 + MLT1C LTR MaLR 1 152 -315 2183 125 82 17 chr1 14232721 14233073 -267960591 + THE1C LTR MaLR 1 375 0 1769 183 63 82 chr1 14233073 14233398 -267960266 + MLT1C LTR MaLR 152 467 0 22 0 0 0 chr1 14234903 14234925 -267958739 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr1 14235291 14235323 -267958341 + (CA)n Simple_repeat Simple_repeat 1 32 0 267 209 30 30 chr1 14235439 14235506 -267958158 + HAL1 LINE L1 956 1022 -1485 2598 301 117 24 chr1 14235524 14237118 -267956546 - L2 LINE L2 0 3313 1562 201 162 0 0 chr1 14237149 14237186 -267956478 + A-rich Low_complexity Low_complexity 1 37 0 2142 135 3 0 chr1 14237186 14237497 -267956167 + AluSx SINE Alu 1 312 0 180 97 0 0 chr1 14237808 14237839 -267955825 + (TAG)n Simple_repeat Simple_repeat 2 32 0 1997 167 0 0 chr1 14238097 14238402 -267955262 + AluSx SINE Alu 1 305 -7 928 274 21 4 chr1 14238504 14238738 -267954926 - MIR SINE MIR -16 246 9 244 325 80 28 chr1 14239023 14239272 -267954392 + L2 LINE L2 2848 3109 -204 218 328 95 9 chr1 14239407 14239523 -267954141 + L3b LINE CR1 1309 1434 -149 375 263 51 28 chr1 14239895 14240164 -267953500 + L1ME4a LINE L1 5710 6071 -50 24 32 0 0 chr1 14240627 14240658 -267953006 + AT_rich Low_complexity Low_complexity 1 31 0 2345 85 3 0 chr1 14241454 14241747 -267951917 - AluSp SINE Alu -19 294 1 530 276 105 19 chr1 14241788 14241998 -267951666 - MIR SINE MIR -17 245 18 233 302 31 10 chr1 14242282 14242378 -267951286 + MIR SINE MIR 21 118 -90 1847 97 4 4 chr1 14242554 14242802 -267950862 + AluSq SINE Alu 41 288 -25 191 167 28 0 chr1 14243032 14243068 -267950596 + L2 LINE L2 3262 3298 -15 667 261 144 62 chr1 14244670 14245072 -267948592 - MLT1J1 LTR MaLR -11 435 1 2134 110 0 10 chr1 14245394 14245686 -267947978 + AluSc SINE Alu 13 301 -8 961 50 0 17 chr1 14245688 14245808 -267947856 + L1PA4 LINE L1 6031 6148 -7 31 68 0 0 chr1 14246368 14246427 -267947237 + AT_rich Low_complexity Low_complexity 1 59 0 547 298 34 14 chr1 14246519 14246727 -267946937 - L1ME4a LINE L1 -257 5864 5653 2314 125 0 0 chr1 14246732 14247043 -267946621 - AluSq SINE Alu -2 311 1 637 214 205 30 chr1 14247229 14247294 -267946370 + MER96B DNA MER1_type? 140 192 -225 189 0 0 0 chr1 14247294 14247315 -267946349 + (CTCA)n Simple_repeat Simple_repeat 4 24 0 637 214 205 30 chr1 14247315 14247483 -267946181 + MER96B DNA MER1_type? 192 414 -3 192 200 0 0 chr1 14248173 14248218 -267945446 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 394 284 35 26 chr1 14248219 14248335 -267945329 - L2 LINE L2 -19 3253 3137 21 0 0 0 chr1 14249314 14249335 -267944329 + AT_rich Low_complexity Low_complexity 1 21 0 3025 82 0 3 chr1 14249854 14250219 -267943445 + THE1B LTR MaLR 1 364 0 2046 182 46 57 chr1 14250344 14250867 -267942797 - Charlie1b DNA MER1_type -6 517 1 2364 93 0 13 chr1 14250990 14251303 -267942361 - AluY SINE Alu -2 309 1 585 231 123 51 chr1 14251385 14251580 -267942084 - MER63A DNA MER1_type 0 210 2 2075 277 130 18 chr1 14253159 14253990 -267939674 - L2 LINE L2 -254 3059 2139 407 280 47 61 chr1 14254005 14254219 -267939445 + L2 LINE L2 3103 3313 0 252 289 248 13 chr1 14254429 14254578 -267939086 - L2 LINE L2 -775 2539 2356 231 304 87 22 chr1 14254615 14254707 -267938957 - L2 LINE L2 -38 3234 3137 316 296 141 21 chr1 14255445 14255587 -267938077 - MIR SINE MIR -102 160 2 2029 129 10 3 chr1 14256411 14256705 -267936959 + AluSq SINE Alu 2 297 -16 1082 210 122 18 chr1 14256757 14257077 -267936587 + MSTD LTR MaLR 1 396 0 799 328 75 22 chr1 14257286 14257832 -267935832 + HAL1b LINE L1 64 638 -710 2078 211 56 59 chr1 14257987 14258955 -267934709 + L1MC5 LINE L1 6478 7521 -440 276 281 32 74 chr1 14259031 14259248 -267934416 + L1ME3A LINE L1 5962 6169 -1 185 379 11 23 chr1 14259488 14259575 -267934089 - L2 LINE L2 -189 3083 2998 443 313 37 28 chr1 14259982 14260199 -267933465 + L2 LINE L2 2256 2474 -840 184 286 214 10 chr1 14260761 14260859 -267932805 - L2 LINE L2 -5 3267 3150 219 300 33 0 chr1 14261075 14261135 -267932529 - L2 LINE L2 -44 3228 3167 219 170 0 0 chr1 14262693 14262740 -267930924 + (CAT)n Simple_repeat Simple_repeat 2 48 0 689 225 5 42 chr1 14264571 14264784 -267928880 - MER20B DNA MER1_type -21 762 558 5950 152 41 35 chr1 14264784 14266848 -267926816 + L1PA15 LINE L1 4087 6161 -4 813 239 162 42 chr1 14266848 14267000 -267926664 - MER20B DNA MER1_type -203 580 448 1181 256 111 55 chr1 14267000 14267524 -267926140 - MLT1H1 LTR MaLR -2 553 1 813 239 162 42 chr1 14267524 14267655 -267926009 - MER20B DNA MER1_type -335 448 263 314 263 40 40 chr1 14267828 14267927 -267925737 - MER20B DNA MER1_type -590 193 95 237 210 0 0 chr1 14268066 14268128 -267925536 + (ATG)n Simple_repeat Simple_repeat 1 62 0 386 329 72 6 chr1 14268150 14268317 -267925347 - MIR SINE MIR -26 236 59 989 194 54 0 chr1 14269896 14270082 -267923582 + MER3 DNA MER1_type 4 199 -10 313 248 76 109 chr1 14270243 14270481 -267923183 - MIR SINE MIR -12 250 21 449 312 25 6 chr1 14270844 14271001 -267922663 + MIR SINE MIR 89 248 -14 278 362 80 7 chr1 14271427 14271565 -267922099 + MIR3 SINE MIR 19 166 -42 1454 242 103 24 chr1 14271656 14272073 -267921591 - MLT1J2 LTR MaLR 0 450 1 239 274 12 122 chr1 14272993 14273050 -267920614 + MIR SINE MIR 111 173 -89 1824 164 7 16 chr1 14273050 14273354 -267920310 - AluJo SINE Alu -11 301 1 239 274 12 122 chr1 14273354 14273460 -267920204 + MIR SINE MIR 173 256 -6 6490 38 0 7 chr1 14273746 14274478 -267919186 + L1PA7 LINE L1 5420 6146 -8 256 266 65 65 chr1 14274708 14274847 -267918817 + L1MB7 LINE L1 5548 5686 -435 * 1475 189 18 4 chr1 14274844 14275124 -267918540 + L1M4 LINE L1 5533 5816 -368 * 1975 175 72 22 chr1 14275105 14275561 -267918103 + L1MB7 LINE L1 5706 6184 0 230 326 69 0 chr1 14275557 14275701 -267917963 + L1ME LINE L1 5665 5818 -303 * 1557 188 0 20 chr1 14276555 14276853 -267916811 + AluJb SINE Alu 1 292 -20 198 261 0 0 chr1 14277582 14277628 -267916036 - L2 LINE L2 -2 3311 3266 267 309 0 0 chr1 14277830 14277927 -267915737 - L1M4 LINE L1 -3056 3090 2994 876 97 8 0 chr1 14277953 14278077 -267915587 - L1MB8 LINE L1 0 6178 6054 233 277 24 24 chr1 14278077 14278160 -267915504 + MIR SINE MIR 159 241 -21 2479 85 3 0 chr1 14279371 14279678 -267913986 - AluSp SINE Alu -4 309 2 697 179 99 94 chr1 14279712 14279913 -267913751 + MER20 DNA MER1_type 11 212 -7 331 295 16 111 chr1 14280812 14281002 -267912662 + MIR SINE MIR 43 214 -48 260 260 0 27 chr1 14281144 14281217 -267912447 - MIR SINE MIR -116 92 22 300 297 73 42 chr1 14281481 14281646 -267912018 - MIR SINE MIR -9 253 84 330 185 185 0 chr1 14282405 14282486 -267911178 - L2 LINE L2 -11 3302 3207 471 139 101 0 chr1 14283501 14283580 -267910084 + L1MB1 LINE L1 6082 6168 0 794 228 234 39 chr1 14284350 14284862 -267908802 - L2 LINE L2 -1 3312 2701 1715 131 0 15 chr1 14284874 14285142 -267908522 - AluSx SINE Alu -6 306 43 988 265 80 43 chr1 14285281 14285718 -267907946 - L1ME4a LINE L1 -233 5888 5436 3990 102 32 4 chr1 14285720 14286258 -267907406 + L1PA10 LINE L1 5614 6166 -2 274 307 25 25 chr1 14286642 14286805 -267906859 - L1ME3A LINE L1 -208 5962 5800 415 287 7 26 chr1 14286814 14287010 -267906654 - L1ME3A LINE L1 -529 5641 5449 648 130 3 3 chr1 14287515 14287627 -267906037 - L1PA8A LINE L1 -191 5940 5829 332 312 83 0 chr1 14288256 14288365 -267905299 + MIR3 SINE MIR 38 155 -53 271 339 116 46 chr1 14288368 14288695 -267904969 - L2 LINE L2 -5 3267 2918 2069 243 89 16 chr1 14288727 14289275 -267904389 + MLT1G LTR MaLR 1 588 -2 743 314 98 10 chr1 14289439 14289828 -267903836 - MLT1K LTR MaLR -42 546 124 830 284 78 21 chr1 14290876 14291158 -267902506 - MLT1J2 LTR MaLR -2 448 151 372 273 10 0 chr1 14291175 14291274 -267902390 + L1ME LINE L1 5563 5662 -504 281 200 27 67 chr1 14291316 14291391 -267902273 - MLT1J2 LTR MaLR -378 72 1 1821 156 71 73 chr1 14292811 14292991 -267900673 - MSTA LTR MaLR -5 423 244 2486 87 3 0 chr1 14292991 14293300 -267900364 + AluSg SINE Alu 1 310 0 1821 156 71 73 chr1 14293300 14293543 -267900121 - MSTA LTR MaLR -184 244 1 467 293 89 22 chr1 14293829 14294054 -267899610 - MIR SINE MIR -21 241 2 314 203 0 55 chr1 14294547 14294675 -267898989 + GA-rich Low_complexity Low_complexity 2 122 0 337 273 38 30 chr1 14294791 14294923 -267898741 + MIR SINE MIR 73 205 -57 4146 31 0 1 chr1 14295276 14295864 -267897800 - L1M4 LINE L1 -693 5491 4911 2221 8 0 0 chr1 14295861 14296106 -267897558 + L1HS LINE L1 5910 6154 -1 * 240 111 0 0 chr1 14296110 14296146 -267897518 + (A)n Simple_repeat Simple_repeat 1 36 0 2351 68 0 61 chr1 14296354 14296680 -267896984 - AluY SINE Alu 0 311 6 256 252 139 40 chr1 14296855 14297006 -267896658 + MIR SINE MIR 40 205 -57 953 205 263 18 chr1 14298281 14298672 -267894992 - L2 LINE L2 0 3313 2827 595 241 90 9 chr1 14298865 14299077 -267894587 - MIR SINE MIR -21 241 13 455 278 81 5 chr1 14299282 14299483 -267894181 + MIR SINE MIR 21 236 -26 782 191 15 0 chr1 14300284 14300415 -267893249 + AluJo SINE Alu 3 135 -177 2179 243 70 25 chr1 14302160 14302515 -267891149 - MLT1E2 LTR MaLR -9 617 225 1882 195 49 21 chr1 14302515 14302900 -267890764 + MSTD LTR MaLR 1 396 0 2179 243 70 25 chr1 14302900 14303116 -267890548 - MLT1E2 LTR MaLR -401 225 20 216 228 0 0 chr1 14304214 14304271 -267889393 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 2705 171 42 47 chr1 14304555 14305037 -267888627 - MER6A DNA MER2_type -318 547 67 1466 62 0 16 chr1 14305037 14305231 -267888433 - L1PA4 LINE L1 0 6155 5965 2705 171 42 47 chr1 14305231 14305297 -267888367 - MER6A DNA MER2_type -798 67 2 1238 137 5 46 chr1 14305338 14305418 -267888246 - MER2 DNA MER2_type -134 211 129 1361 110 64 14 chr1 14305418 14305636 -267888028 + MER30 DNA MER1_type 2 230 0 1238 137 5 46 chr1 14305636 14305774 -267887890 - MER2 DNA MER2_type -216 129 2 2051 117 29 0 chr1 14305851 14306132 -267887532 + AluSx SINE Alu 16 304 -8 1147 163 40 26 chr1 14307096 14307323 -267886341 + MER106A DNA MER1_type 6 235 -1 571 218 17 16 chr1 14307872 14308004 -267885660 - MSTB2 LTR MaLR 0 457 264 855 121 38 0 chr1 14308009 14308141 -267885523 - MSTB2 LTR MaLR -320 137 1 299 254 15 0 chr1 14308143 14308210 -267885454 - MLT1K LTR MaLR -341 247 180 448 242 87 37 chr1 14308396 14308557 -267885107 + MIR SINE MIR 88 256 -6 1986 127 68 6 chr1 14308955 14309293 -267884371 - MLT1B LTR MaLR -7 383 25 353 209 90 122 chr1 14310085 14310335 -267883329 - MLT1H LTR MaLR 0 549 192 2368 97 0 3 chr1 14310553 14310863 -267882801 + AluSg SINE Alu 1 309 -1 271 284 39 29 chr1 14310917 14311019 -267882645 - MIR3 SINE MIR -15 193 91 244 336 41 13 chr1 14312430 14312612 -267881052 - MER5B DNA MER1_type -2 186 1 367 217 75 50 chr1 14312647 14312767 -267880897 + MIR SINE MIR 47 169 -93 26 50 0 0 chr1 14312971 14313011 -267880653 + AT_rich Low_complexity Low_complexity 1 40 0 307 278 17 43 chr1 14313069 14313184 -267880480 - L1ME3A LINE L1 -88 6082 5971 950 191 0 6 chr1 14313223 14313391 -267880273 + MER5A DNA MER1_type 1 167 -22 423 0 0 0 chr1 14313421 14313468 -267880196 + (TG)n Simple_repeat Simple_repeat 2 48 0 834 242 33 15 chr1 14313471 14313744 -267879920 - L1ME3A LINE L1 -208 5962 5685 378 0 0 0 chr1 14314137 14314179 -267879485 + (TG)n Simple_repeat Simple_repeat 2 43 0 706 242 93 73 chr1 14314181 14314234 -267879430 - L1ME3A LINE L1 -2143 4003 3953 270 56 0 0 chr1 14314234 14314270 -267879394 + (CAT)n Simple_repeat Simple_repeat 3 38 0 706 242 93 73 chr1 14314270 14314357 -267879307 - L1ME3A LINE L1 -2193 3953 3869 1841 191 78 38 chr1 14314357 14314806 -267878858 - MLT1C LTR MaLR 0 467 1 706 242 93 73 chr1 14314806 14315061 -267878603 - L1ME3A LINE L1 -2277 3869 3599 850 224 53 12 chr1 14315077 14315322 -267878342 - L1MC5 LINE L1 -45 7916 7662 2429 94 3 0 chr1 14315360 14315668 -267877996 + AluSc SINE Alu 1 309 0 1316 76 0 0 chr1 14316009 14316167 -267877497 + AluSq SINE Alu 146 303 -10 1064 228 45 62 chr1 14316196 14316268 -267877396 - L1MC5 LINE L1 -241 7720 7648 2304 104 3 0 chr1 14316268 14316566 -267877098 - AluSx SINE Alu -13 299 1 1064 228 45 62 chr1 14316566 14316976 -267876688 - L1MC5 LINE L1 -313 7648 7246 454 232 60 20 chr1 14316984 14317135 -267876529 - Charlie2 DNA MER1_type -43 2819 2663 205 286 65 0 chr1 14317593 14317670 -267875994 + MIR SINE MIR 120 201 -61 * 295 290 56 9 chr1 14317668 14317775 -267875889 - L2 LINE L2 0 3313 3202 2228 166 30 38 chr1 14317929 14318057 -267875607 + MLT1C LTR MaLR 1 129 -338 2360 82 0 28 chr1 14318057 14318375 -267875289 + AluY SINE Alu 1 309 -2 2228 166 30 38 chr1 14318375 14318717 -267874947 + MLT1C LTR MaLR 129 467 0 856 241 37 17 chr1 14318750 14318991 -267874673 - MIR SINE MIR 0 262 17 398 179 189 0 chr1 14319838 14319933 -267873731 + MER81 DNA DNA 2 114 0 4273 168 25 56 chr1 14321386 14322283 -267871381 + L1MB7 LINE L1 5309 6177 -7 408 326 73 23 chr1 14322300 14322712 -267870952 - L2 LINE L2 -238 3034 2600 405 273 80 27 chr1 14323067 14323254 -267870410 + MIR SINE MIR 66 262 0 735 251 18 6 chr1 14323604 14323775 -267869889 + MER45A DNA AcHobo 6 178 0 2052 171 17 0 chr1 14324043 14324389 -267869275 - MLT1B LTR MaLR 0 390 39 248 225 297 0 chr1 14324439 14324550 -267869114 + MIR SINE MIR 119 262 0 249 304 0 0 chr1 14325268 14325337 -267868327 + MLT1J LTR MaLR 110 178 -333 30606 115 11 10 chr1 14325358 14329792 -267863872 - L1P LINE L1 -1694 4452 11 1558 110 9 0 chr1 14329804 14330023 -267863641 + THE1C LTR MaLR 155 375 0 356 211 14 0 chr1 14330023 14330094 -267863570 - MER6B DNA MER2_type -201 75 4 201 163 61 0 chr1 14330096 14330145 -267863519 + (TATG)n Simple_repeat Simple_repeat 2 53 0 295 298 170 0 chr1 14330994 14331165 -267862499 - MIR SINE MIR -6 256 57 204 214 0 0 chr1 14331357 14331413 -267862251 + CT-rich Low_complexity Low_complexity 2 57 0 611 291 18 18 chr1 14331953 14332173 -267861491 - MIR SINE MIR -34 228 9 422 261 136 0 chr1 14332394 14332570 -267861094 - MIR SINE MIR -27 235 36 2447 115 8 21 chr1 14332744 14333126 -267860538 - L1PA12 LINE L1 -242 5926 5550 503 235 35 0 chr1 14333135 14333250 -267860414 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 14333544 14333859 -267859805 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 14334891 14335151 -267858513 + MER33 DNA MER1_type 9 294 -30 570 296 26 22 chr1 14335158 14335384 -267858280 - L2 LINE L2 -46 3267 3041 475 274 55 0 chr1 14335993 14336139 -267857525 + MIR SINE MIR 31 184 -78 329 335 6 0 chr1 14336533 14336712 -267856952 + (CA)n Simple_repeat Simple_repeat 1 180 0 655 232 107 0 chr1 14336955 14337123 -267856541 + MIR SINE MIR 42 227 -35 278 287 70 26 chr1 14337343 14337458 -267856206 + MIR SINE MIR 13 132 -130 2023 116 28 7 chr1 14337637 14337921 -267855743 - AluSc SINE Alu -2 307 18 180 200 0 0 chr1 14337984 14338024 -267855640 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 200 152 19 chr1 14338078 14338183 -267855481 - MLT1L LTR MaLR 0 615 497 1926 139 11 7 chr1 14338957 14339244 -267854420 + AluJb SINE Alu 1 288 -24 641 227 19 13 chr1 14340067 14340221 -267853443 - L2 LINE L2 0 3313 3159 2016 125 0 0 chr1 14340232 14340504 -267853160 + AluSx SINE Alu 1 272 -40 204 40 0 0 chr1 14340516 14340541 -267853123 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 318 216 148 0 chr1 14340787 14340875 -267852789 - MLT1I LTR MaLR -238 171 71 451 322 87 80 chr1 14340946 14341307 -267852357 - L2 LINE L2 -222 3091 2724 1528 154 0 17 chr1 14341307 14341547 -267852117 - AluJb SINE Alu -76 236 1 451 322 87 80 chr1 14341547 14341767 -267851897 - L2 LINE L2 -589 2724 2507 396 288 132 27 chr1 14342809 14343066 -267850598 + L2 LINE L2 2991 3274 -39 563 273 33 49 chr1 14344161 14344281 -267849383 + MER5A DNA MER1_type 1 118 -71 1895 118 4 4 chr1 14344281 14344552 -267849112 - AluY SINE Alu -38 273 3 563 273 33 49 chr1 14344552 14344614 -267849050 + MER5A DNA MER1_type 118 180 -9 27 0 0 0 chr1 14345954 14345981 -267847683 + AT_rich Low_complexity Low_complexity 1 27 0 532 281 89 37 chr1 14348404 14348650 -267845014 - MIR SINE MIR -1 261 3 2603 225 82 39 chr1 14348766 14349556 -267844108 + L1MC4 LINE L1 7219 8042 0 838 278 62 0 chr1 14349568 14349795 -267843869 + MIR SINE MIR 5 245 -17 694 265 158 56 chr1 14350407 14350574 -267843090 - L2 LINE L2 -415 2899 2750 1617 162 7 45 chr1 14350574 14350882 -267842782 - AluJb SINE Alu -16 296 1 694 265 158 56 chr1 14350882 14351125 -267842539 - L2 LINE L2 -564 2750 2447 514 301 61 25 chr1 14352192 14352388 -267841276 + MIR SINE MIR 6 208 -54 467 103 26 0 chr1 14352716 14352794 -267840870 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 363 261 120 0 chr1 14353170 14353262 -267840402 + MIR SINE MIR 29 131 -131 328 349 28 60 chr1 14353326 14353575 -267840089 - MIR SINE MIR 0 262 22 1052 228 114 30 chr1 14353620 14354070 -267839594 + MLT1E LTR MaLR 54 593 0 858 209 40 79 chr1 14354070 14354347 -267839317 - L1ME3A LINE L1 -24 6146 5881 314 287 11 0 chr1 14354574 14354661 -267839003 + MIR3 SINE MIR 68 155 -53 239 333 21 50 chr1 14355400 14355541 -267838123 + L2 LINE L2 2805 2941 -331 2626 183 22 8 chr1 14355662 14356164 -267837500 - L1MB7 LINE L1 -2 6182 5674 279 265 52 52 chr1 14356181 14356317 -267837347 + L2 LINE L2 3159 3294 -19 413 268 21 21 chr1 14356418 14356442 -267837222 - L1MA10 LINE L1 -30 6304 6281 2941 240 43 21 chr1 14356442 14357278 -267836386 - L1ME1 LINE L1 -45 6190 5337 4738 265 75 27 chr1 14357281 14358700 -267834964 - L1ME1 LINE L1 -2703 3512 2162 1131 156 80 25 chr1 14358700 14358899 -267834765 + MER6B DNA MER2_type 1 210 0 4738 265 75 27 chr1 14358899 14360022 -267833642 - L1ME1 LINE L1 -4053 2162 793 495 0 0 0 chr1 14360022 14360077 -267833587 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 4738 265 75 27 chr1 14360077 14360875 -267832789 - L1ME1 LINE L1 -5422 793 34 26 50 0 0 chr1 14361338 14361378 -267832286 + AT_rich Low_complexity Low_complexity 1 40 0 253 250 106 29 chr1 14361842 14361946 -267831718 + MIR3 SINE MIR 89 200 -8 704 209 0 0 chr1 14363160 14363303 -267830361 + FLAM_A SINE Alu 5 147 0 582 267 77 89 chr1 14363600 14363839 -267829825 - MLT1I LTR MaLR -5 404 171 2196 143 26 37 chr1 14363839 14364218 -267829446 - THE1C LTR MaLR 0 375 1 582 267 77 89 chr1 14364218 14364383 -267829281 - MLT1I LTR MaLR -238 171 5 908 334 18 21 chr1 14365314 14365697 -267827967 - MLT1I LTR MaLR -1 408 27 186 203 0 87 chr1 14366421 14366490 -267827174 + L2 LINE L2 1917 1979 -1335 537 261 30 18 chr1 14366490 14366655 -267827009 + L1M4c LINE L1 1223 1389 -4995 388 261 85 33 chr1 14366668 14366821 -267826843 + L1M4 LINE L1 1357 1517 -5025 2311 279 60 48 chr1 14366822 14368110 -267825554 + L2 LINE L2 1994 3312 -1 2263 105 0 0 chr1 14369433 14369727 -267823937 + AluY SINE Alu 1 294 -17 207 0 0 0 chr1 14369760 14369783 -267823881 + (A)n Simple_repeat Simple_repeat 1 23 0 869 337 14 7 chr1 14369978 14370275 -267823389 - MLT1K LTR MaLR -5 583 285 395 297 27 49 chr1 14370281 14370466 -267823198 - MLT1K LTR MaLR -406 182 2 306 377 0 0 chr1 14371768 14371914 -267821750 + L1MC4a LINE L1 5754 5899 -1909 524 304 163 9 chr1 14371996 14372345 -267821319 + MLT1J LTR MaLR 53 455 -56 22 70 0 0 chr1 14372922 14372965 -267820699 + AT_rich Low_complexity Low_complexity 1 43 0 627 217 112 7 chr1 14373005 14373157 -267820507 - MER58C DNA MER1_type -2 213 46 236 291 145 47 chr1 14373177 14373411 -267820253 - L1ME LINE L1 -335 5835 5579 354 301 26 18 chr1 14373669 14373782 -267819882 + MIR SINE MIR 22 135 -127 4217 68 2 2 chr1 14373883 14374396 -267819268 - L1PA10 LINE L1 0 6168 5656 896 251 84 42 chr1 14374497 14375020 -267818644 - L2 LINE L2 -2 3311 2748 191 277 62 31 chr1 14375021 14375086 -267818578 - L2 LINE L2 -497 2817 2751 2338 107 3 3 chr1 14375095 14375403 -267818261 + AluSx SINE Alu 3 310 -2 237 300 100 18 chr1 14375410 14375520 -267818144 - L2 LINE L2 -481 2833 2715 322 270 36 9 chr1 14375556 14375667 -267817997 - L2 LINE L2 -485 2829 2716 189 0 0 0 chr1 14375690 14375711 -267817953 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 351 226 124 1 chr1 14375735 14375839 -267817825 - MLT1F LTR MaLR -250 292 189 260 199 20 27 chr1 14375840 14375986 -267817678 + (CAGAGA)n Simple_repeat Simple_repeat 4 148 0 2492 144 23 61 chr1 14375999 14376212 -267817452 + MSTB LTR MaLR 1 190 -236 2353 116 0 0 chr1 14376212 14376515 -267817149 - AluSx SINE Alu -9 303 1 2492 144 23 61 chr1 14376515 14376744 -267816920 + MSTB LTR MaLR 190 426 0 198 0 0 0 chr1 14376773 14376795 -267816869 + (GA)n Simple_repeat Simple_repeat 2 23 0 633 262 62 41 chr1 14376935 14377179 -267816485 - L2 LINE L2 -656 2658 2410 3358 173 58 5 chr1 14377179 14377993 -267815671 - L1MB5 LINE L1 -213 5961 5112 219 219 24 85 chr1 14378110 14378192 -267815472 + MIR SINE MIR 170 246 -16 2278 107 7 0 chr1 14378627 14378925 -267814739 + AluSx SINE Alu 1 300 -12 602 283 79 96 chr1 14379006 14379204 -267814460 + MLT1L LTR MaLR 46 246 -369 2013 138 0 35 chr1 14379204 14379515 -267814149 + AluSx SINE Alu 1 300 -12 602 283 79 96 chr1 14379515 14379888 -267813776 + MLT1L LTR MaLR 246 607 -8 350 259 26 26 chr1 14379900 14380016 -267813648 - 7SK RNA RNA -70 123 8 207 125 0 0 chr1 14380092 14380132 -267813532 + (GA)n Simple_repeat Simple_repeat 2 41 0 1746 185 27 97 chr1 14380399 14380843 -267812821 - MLT2D LTR ERVL -1 413 1 269 303 0 13 chr1 14381219 14381295 -267812369 + L2 LINE L2 3188 3262 -10 258 358 41 8 chr1 14381427 14381550 -267812114 + MIR SINE MIR 8 134 -128 1262 190 174 22 chr1 14381552 14381900 -267811764 + LTR37A LTR ERV1 1 409 -17 2556 70 0 16 chr1 14381900 14382213 -267811451 - AluSx SINE Alu -4 308 1 1262 190 174 22 chr1 14382213 14382232 -267811432 + LTR37A LTR ERV1 409 424 -2 568 309 99 8 chr1 14382346 14382824 -267810840 + L2 LINE L2 2653 3169 -144 334 276 10 10 chr1 14382911 14383009 -267810655 - L2 LINE L2 -42 3271 3174 2231 113 3 0 chr1 14383363 14383665 -267809999 - AluSx SINE Alu -9 303 1 587 224 32 0 chr1 14383707 14383832 -267809832 - MER5A DNA MER1_type 0 189 61 1007 229 76 8 chr1 14383843 14384105 -267809559 - MER33 DNA MER1_type -36 288 9 291 196 0 0 chr1 14384207 14384258 -267809406 - MER5A DNA MER1_type -138 51 1 387 284 139 15 chr1 14384263 14384464 -267809200 + HAL1 LINE L1 2282 2507 0 238 261 45 11 chr1 14385189 14385277 -267808387 + L1ME4a LINE L1 5656 5746 -375 409 190 13 0 chr1 14385278 14385357 -267808307 - L2 LINE L2 -12 3301 3222 267 208 0 0 chr1 14385519 14385572 -267808092 + MLT1K LTR MaLR 5 57 -531 255 273 246 0 chr1 14385652 14385762 -267807902 + MER91C DNA MER1_type 2 138 -2 277 212 45 15 chr1 14385988 14386054 -267807610 + LTR67 LTR ERVL 485 552 -5 335 240 83 0 chr1 14386216 14386312 -267807352 + L1ME4a LINE L1 6002 6105 -16 1022 173 6 11 chr1 14386320 14386499 -267807165 - AluSc SINE Alu 0 309 132 2024 159 0 3 chr1 14386499 14386801 -267806863 - AluSx SINE Alu -11 301 1 248 311 56 31 chr1 14387250 14387411 -267806253 + L3b LINE CR1 1211 1375 -208 255 299 45 52 chr1 14387416 14387550 -267806114 - L2 LINE L2 -1 3271 3139 333 244 144 61 chr1 14387810 14387990 -267805674 + Charlie8 DNA MER1_type 82 276 -2141 302 250 15 0 chr1 14388045 14388113 -267805551 + Charlie8 DNA MER1_type 1360 1428 -989 2232 84 10 3 chr1 14388304 14388602 -267805062 + AluY SINE Alu 1 300 -11 204 266 185 46 chr1 14388686 14388859 -267804805 + MIR SINE MIR 30 226 -36 756 224 27 58 chr1 14388910 14389133 -267804531 + MER20 DNA MER1_type 1 216 -3 1274 103 49 22 chr1 14389731 14390031 -267803633 + AluSc SINE Alu 1 305 0 713 159 0 8 chr1 14390725 14390851 -267802813 - AluY SINE Alu -185 126 2 985 181 6 0 chr1 14390886 14391052 -267802612 - MLT1C LTR MaLR -299 168 2 1177 182 29 0 chr1 14391054 14391263 -267802401 - MER20 DNA MER1_type 0 219 5 1775 201 78 109 chr1 14392065 14392447 -267801217 - LTR1B LTR ERV1 -80 746 395 2243 99 3 3 chr1 14392447 14392741 -267800923 + AluSg SINE Alu 1 294 -16 1775 201 78 109 chr1 14392741 14393075 -267800589 - LTR1B LTR ERV1 -431 395 52 1206 186 32 14 chr1 14396186 14396407 -267797257 - AluJb SINE Alu -12 300 76 259 217 12 36 chr1 14396512 14396595 -267797069 - MER5A DNA MER1_type -108 81 1 657 254 34 54 chr1 14397725 14397930 -267795734 - MER20 DNA MER1_type -2 217 17 478 303 139 29 chr1 14398091 14398401 -267795263 - L2 LINE L2 0 3313 2970 267 103 0 0 chr1 14398526 14398565 -267795099 + (TA)n Simple_repeat Simple_repeat 1 39 0 1850 178 104 31 chr1 14398565 14398980 -267794684 - MLT2B1 LTR ERVL -68 452 8 2190 85 7 7 chr1 14400931 14401213 -267792451 + AluY SINE Alu 1 282 -29 1746 124 3 42 chr1 14401252 14401559 -267792105 + AluSx SINE Alu 3 297 -15 1275 113 0 0 chr1 14401688 14401848 -267791816 - AluSg SINE Alu -150 160 1 718 173 154 0 chr1 14401866 14402028 -267791636 + MER53 DNA DNA 3 189 0 459 256 31 31 chr1 14402564 14402724 -267790940 + MLT1I LTR MaLR 5 164 -245 467 256 141 0 chr1 14402763 14402919 -267790745 + MLT1I LTR MaLR 232 409 0 1683 206 11 11 chr1 14402923 14403287 -267790377 + MLT1A1 LTR MaLR 2 365 0 233 218 23 69 chr1 14403614 14403701 -267789963 + L2 LINE L2 2697 2779 -535 1210 190 5 0 chr1 14403959 14404170 -267789494 - MLT1F LTR MaLR -1 541 330 443 201 45 16 chr1 14404270 14404401 -267789263 - MLT1F LTR MaLR -376 191 5 3152 250 134 19 chr1 14407117 14407561 -267786103 + L1M4 LINE L1 3750 4141 -2005 2479 58 14 0 chr1 14407561 14407854 -267785810 - AluY SINE Alu -14 297 1 3152 250 134 19 chr1 14407854 14408740 -267784924 + L1M4 LINE L1 4141 5234 -912 1908 174 41 33 chr1 14408890 14409281 -267784383 + MSTD LTR MaLR 1 394 -2 214 280 0 0 chr1 14409327 14409377 -267784287 + MIR SINE MIR 69 118 -144 962 205 68 0 chr1 14410411 14410616 -267783048 - MER20 DNA MER1_type 0 219 1 286 288 0 0 chr1 14410692 14410772 -267782892 - L2 LINE L2 -1 3312 3233 16293 161 32 4 chr1 14410962 14413637 -267780027 + L1M1 LINE L1 13 2763 -4802 520 196 29 0 chr1 14413644 14413746 -267779918 - L1M1 LINE L1 -6160 1405 1301 477 180 40 0 chr1 14413779 14413879 -267779785 + L1M1 LINE L1 3785 3888 -3677 1500 147 143 0 chr1 14414071 14414206 -267779458 - AluJb SINE Alu -7 295 181 206 0 69 0 chr1 14414206 14414235 -267779429 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1500 147 143 0 chr1 14414235 14414357 -267779307 - AluJb SINE Alu -121 181 1 226 284 230 37 chr1 14414727 14415023 -267778641 + L2 LINE L2 2915 3267 -5 189 298 18 0 chr1 14415381 14415438 -267778226 - MIR3 SINE MIR -3 205 148 218 196 89 0 chr1 14415505 14415561 -267778103 - MIR SINE MIR -166 96 36 297 261 85 21 chr1 14416421 14416574 -267777090 + L1M1 LINE L1 5114 5274 -2291 1085 113 0 0 chr1 14416574 14416715 -267776949 + AluJb SINE Alu 1 141 -171 260 283 114 61 chr1 14416759 14417137 -267776527 + L1M1 LINE L1 5260 5657 -1908 822 253 116 76 chr1 14417573 14417848 -267775816 + L1ME3 LINE L1 5984 6246 -1335 2086 140 7 0 chr1 14417848 14418141 -267775523 - AluSx SINE Alu -17 295 1 822 253 116 76 chr1 14418141 14418814 -267774850 + L1ME3 LINE L1 6246 7004 -577 1984 200 34 122 chr1 14418814 14419485 -267774179 - LTR9 LTR ERV1 0 612 1 822 253 116 76 chr1 14419485 14419745 -267773919 + L1ME3 LINE L1 7004 7252 -329 209 128 21 21 chr1 14420532 14420579 -267773085 + MIR SINE MIR 60 106 -156 1011 237 57 65 chr1 14420582 14420621 -267773043 - MLT2C2 LTR ERVL -2 462 424 441 0 0 0 chr1 14420621 14420670 -267772994 + (TG)n Simple_repeat Simple_repeat 2 50 0 1011 237 57 65 chr1 14420670 14420997 -267772667 - MLT2C2 LTR ERVL -40 424 99 1704 112 7 19 chr1 14420997 14421266 -267772398 + L1MA1 LINE L1 6029 6294 -8 35 0 0 0 chr1 14421270 14421305 -267772359 + AT_rich Low_complexity Low_complexity 1 35 0 2909 86 0 10 chr1 14421316 14421723 -267771941 + L1PB1 LINE L1 5749 6151 0 539 195 18 0 chr1 14421741 14421854 -267771810 - MLT2B2 LTR ERVL -400 115 1 420 289 21 14 chr1 14421860 14422002 -267771662 + MIR SINE MIR 109 251 -11 531 251 89 11 chr1 14422164 14422355 -267771309 - L1ME LINE L1 -393 5769 5564 286 272 48 51 chr1 14422542 14422712 -267770952 + MIR SINE MIR 5 175 -63 1093 214 105 40 chr1 14423441 14423792 -267769872 - MLT1A2 LTR MaLR 0 374 1 240 234 149 70 chr1 14423793 14423994 -267769670 - L2 LINE L2 -85 3228 3012 380 307 111 16 chr1 14424468 14424657 -267769007 - MIR SINE MIR -36 226 20 4235 140 19 107 chr1 14424840 14426398 -267767266 - pTR5 LTR ERV1 -1 2605 1524 340 255 29 0 chr1 14426953 14427055 -267766609 + MER103 DNA DNA 15 119 -47 266 206 79 16 chr1 14427355 14427418 -267766246 - MER103 DNA DNA -49 117 51 207 250 21 0 chr1 14428506 14428554 -267765110 + MIR SINE MIR 30 78 -130 193 182 0 0 chr1 14428896 14428929 -267764735 - MIR SINE MIR -12 250 218 665 305 58 38 chr1 14428989 14429425 -267764239 + MLT1K LTR MaLR 69 582 -6 360 269 39 0 chr1 14429431 14429535 -267764129 + MIR SINE MIR 85 192 -70 277 336 66 16 chr1 14429638 14429760 -267763904 - MIR SINE MIR -126 136 9 341 188 229 0 chr1 14429818 14429914 -267763750 - MER91C DNA MER1_type 0 140 23 421 291 127 12 chr1 14430913 14431157 -267762507 + L2 LINE L2 3042 3313 0 269 302 23 0 chr1 14431559 14431645 -267762019 - L2 LINE L2 -2 3270 3183 571 311 11 6 chr1 14431878 14432058 -267761606 + MIR SINE MIR 61 241 -21 189 0 0 0 chr1 14432149 14432170 -267761494 + (CA)n Simple_repeat Simple_repeat 2 22 0 280 280 9 28 chr1 14432171 14432278 -267761386 + (TA)n Simple_repeat Simple_repeat 1 105 0 2395 103 50 8 chr1 14433180 14433539 -267760125 - THE1C LTR MaLR 0 375 2 189 171 0 0 chr1 14434384 14434419 -267759245 + (CAT)n Simple_repeat Simple_repeat 3 37 0 245 312 29 0 chr1 14434425 14434515 -267759149 - MIR SINE MIR -73 135 60 712 199 114 5 chr1 14434527 14434728 -267758936 + L2 LINE L2 2755 2977 -337 271 293 0 0 chr1 14435101 14435176 -267758488 + L2 LINE L2 3234 3308 -5 215 357 135 0 chr1 14435948 14436133 -267757531 - MIR SINE MIR -16 246 37 2186 186 46 72 chr1 14436201 14436770 -267756894 + MLT2B3 LTR ERVL 1 554 0 2924 72 5 10 chr1 14437307 14437698 -267755966 - L1PA8 LINE L1 -2 6170 5782 216 174 0 43 chr1 14437702 14437754 -267755910 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 1176 239 32 13 chr1 14437853 14438162 -267755502 - L1ME2 LINE L1 -9 6155 5841 1241 204 37 102 chr1 14438177 14438328 -267755336 + MLT1A2 LTR MaLR 9 168 -206 2130 117 0 7 chr1 14438328 14438627 -267755037 + AluSx SINE Alu 1 297 -15 1241 204 37 102 chr1 14438627 14438858 -267754806 + MLT1A2 LTR MaLR 168 366 -8 403 248 4 54 chr1 14438866 14439006 -267754658 - L1ME2 LINE L1 -336 5826 5687 395 304 152 17 chr1 14440101 14440397 -267753267 + LTR16C LTR ERVL 140 475 -16 180 244 22 0 chr1 14440452 14440497 -267753167 + MIR SINE MIR 110 155 -107 267 317 49 32 chr1 14440623 14440869 -267752795 + L1ME4a LINE L1 4410 4659 -1487 1399 101 0 0 chr1 14441078 14441296 -267752368 + AluSc SINE Alu 105 322 0 617 292 90 17 chr1 14441597 14441885 -267751779 + L1ME4a LINE L1 5393 5701 -420 1997 137 0 14 chr1 14441993 14442318 -267751346 - AluSx SINE Alu 0 321 1 21 0 0 0 chr1 14442396 14442417 -267751247 + AT_rich Low_complexity Low_complexity 1 21 0 314 289 93 25 chr1 14442426 14442630 -267751034 + L1ME4a LINE L1 5899 6116 -5 535 342 18 9 chr1 14443133 14443355 -267750309 - MIR SINE MIR -17 245 22 257 265 29 15 chr1 14443670 14443738 -267749926 - L2 LINE L2 -2 3270 3202 205 273 239 30 chr1 14443762 14444092 -267749572 + L2 LINE L2 2246 2644 -670 1602 80 5 0 chr1 14445238 14445451 -267748213 - L1P LINE L1 -5932 214 1 7112 122 15 13 chr1 14445452 14447123 -267746541 + L1MA3 LINE L1 4628 6305 0 833 294 32 38 chr1 14447289 14447732 -267745932 - L2 LINE L2 -19 3294 2855 775 229 66 5 chr1 14447732 14448057 -267745607 - MSTD LTR MaLR 0 396 1 469 299 91 12 chr1 14448065 14448306 -267745358 - L2 LINE L2 -508 2806 2547 521 249 306 10 chr1 14448308 14448706 -267744958 + L2 LINE L2 2029 2544 -770 899 176 60 11 chr1 14449668 14449850 -267743814 - MER20 DNA MER1_type 0 219 29 355 329 35 6 chr1 14450913 14451083 -267742581 - MIR SINE MIR -39 223 49 361 274 17 8 chr1 14451346 14451463 -267742201 - MIR SINE MIR -117 145 28 364 242 74 0 chr1 14452056 14452151 -267741513 - MIR3 SINE MIR -11 197 96 701 296 30 4 chr1 14452234 14452467 -267741197 - MLT1K LTR MaLR -12 576 338 1037 287 122 45 chr1 14453231 14453678 -267739986 + L2 LINE L2 2311 2722 -591 1096 200 5 5 chr1 14453678 14453883 -267739781 + MER3 DNA MER1_type 5 209 0 1037 287 122 45 chr1 14453883 14454346 -267739318 + L2 LINE L2 2722 3293 -20 235 340 74 37 chr1 14454583 14454745 -267738919 + L2 LINE L2 3103 3270 -2 755 170 28 55 chr1 14454758 14454940 -267738724 - MER45A DNA AcHobo -1 177 1 191 338 127 0 chr1 14455176 14455318 -267738346 + L2 LINE L2 3112 3271 -1 180 0 0 0 chr1 14455417 14455437 -267738227 + (TA)n Simple_repeat Simple_repeat 2 21 0 677 255 69 39 chr1 14455624 14455828 -267737836 - MIR SINE MIR -50 212 3 424 289 101 23 chr1 14456051 14456269 -267737395 - MIR SINE MIR -12 250 16 617 300 69 4 chr1 14457305 14457538 -267736126 - MIR SINE MIR 0 262 15 208 149 81 0 chr1 14457689 14457763 -267735901 + (TA)n Simple_repeat Simple_repeat 2 81 0 30 0 0 0 chr1 14457839 14457869 -267735795 + AT_rich Low_complexity Low_complexity 1 30 0 428 125 68 11 chr1 14457874 14458141 -267735523 + (TA)n Simple_repeat Simple_repeat 1 282 0 192 319 195 25 chr1 14458871 14459153 -267734511 - L2 LINE L2 -27 3245 2916 1002 303 44 26 chr1 14459459 14459848 -267733816 + LTR16C LTR ERVL 96 491 0 248 284 0 25 chr1 14460233 14460314 -267733350 + (TCCA)n Simple_repeat Simple_repeat 1 79 0 644 118 0 8 chr1 14460321 14460440 -267733224 + (TTCC)n Simple_repeat Simple_repeat 2 119 0 312 120 0 0 chr1 14460442 14460492 -267733172 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 438 69 0 0 chr1 14461184 14461242 -267732422 + (GA)n Simple_repeat Simple_repeat 1 58 0 969 113 69 25 chr1 14461260 14461419 -267732245 - THE1B LTR MaLR 0 364 199 1449 166 4 0 chr1 14461523 14461758 -267731906 + MSTB LTR MaLR 191 426 0 295 29 0 0 chr1 14462041 14462075 -267731589 - MLT2C1 LTR ERVL 0 397 364 354 98 0 0 chr1 14462119 14462170 -267731494 + (GA)n Simple_repeat Simple_repeat 2 52 0 1064 204 104 36 chr1 14462200 14462450 -267731214 - MLT2B1 LTR ERVL -91 429 163 2028 132 0 0 chr1 14462472 14462778 -267730886 - AluSx SINE Alu 0 306 1 347 221 0 0 chr1 14463379 14463447 -267730217 - Charlie8 DNA MER1_type -2 2415 2348 2378 71 0 0 chr1 14463488 14463793 -267729871 - AluY SINE Alu 0 305 1 2330 105 0 0 chr1 14464094 14464389 -267729275 + AluSx SINE Alu 3 297 -15 1222 164 263 54 chr1 14465321 14465675 -267727989 - MLT1F1 LTR MaLR 0 567 140 281 114 0 0 chr1 14465951 14465995 -267727669 - MLT1F1 LTR MaLR -489 53 10 473 188 0 21 chr1 14466679 14466775 -267726889 - MLT1F1 LTR MaLR 0 567 474 239 328 45 52 chr1 14466824 14466958 -267726706 + L2 LINE L2 3173 3305 -8 423 318 125 34 chr1 14467086 14467336 -267726328 - L1ME3A LINE L1 -286 5884 5658 2302 118 0 0 chr1 14467336 14467641 -267726023 + AluSx SINE Alu 1 305 -7 423 318 125 34 chr1 14467641 14467943 -267725721 - L1ME3A LINE L1 -512 5658 5266 331 276 77 82 chr1 14468094 14468351 -267725313 - L1ME3A LINE L1 -1440 4706 4449 2218 105 3 16 chr1 14468351 14468657 -267725007 - AluY SINE Alu -7 304 3 331 276 77 82 chr1 14468657 14469068 -267724596 - L1ME3A LINE L1 -1697 4449 4064 719 218 39 22 chr1 14469204 14469383 -267724281 - HERVL74 LTR ERVL -4115 1570 1389 182 36 0 0 chr1 14469394 14469422 -267724242 + L2 LINE L2 3286 3313 0 264 59 0 0 chr1 14469787 14469821 -267723843 + (TG)n Simple_repeat Simple_repeat 2 35 0 605 306 0 0 chr1 14470015 14470185 -267723479 + MER117 DNA MER1_type 1 170 -27 2318 99 0 13 chr1 14471169 14471473 -267722191 - AluSq SINE Alu -12 301 2 362 250 143 7 chr1 14471474 14471511 -267722153 - MLT1H LTR MaLR -379 170 139 1052 244 72 26 chr1 14471511 14471856 -267721808 + MLT1A1 LTR MaLR 5 365 0 362 250 143 7 chr1 14471856 14471958 -267721706 - MLT1H LTR MaLR -410 139 12 2188 95 0 7 chr1 14472862 14473156 -267720508 - AluSg SINE Alu -14 296 5 469 267 130 31 chr1 14473318 14473610 -267720054 + LTR33 LTR ERVL 50 370 -151 1411 161 88 102 chr1 14474239 14474275 -267719389 - MER66A LTR ERV1 -28 450 415 2734 92 3 14 chr1 14474275 14474643 -267719021 - THE1B LTR MaLR 0 364 1 1411 161 88 102 chr1 14474643 14475047 -267718617 - MER66A LTR ERV1 -63 415 97 300 188 0 31 chr1 14475211 14475275 -267718389 + MIR SINE MIR 201 262 0 199 372 47 31 chr1 14475793 14475922 -267717742 + MIR3 SINE MIR 30 160 -48 696 283 121 41 chr1 14475922 14476237 -267717427 + MER102b DNA MER1_type 1 340 -1 2160 131 20 7 chr1 14476248 14476554 -267717110 - AluSx SINE Alu -2 310 1 305 221 11 74 chr1 14476628 14476723 -267716941 - MLT1H1 LTR MaLR -13 542 454 361 290 40 0 chr1 14476915 14477039 -267716625 + L1MEd LINE L1 44 172 -5947 1368 286 78 46 chr1 14477128 14477899 -267715765 + L1MEd LINE L1 328 1073 -5056 1714 179 10 7 chr1 14477899 14478196 -267715468 - AluSx SINE Alu -14 298 1 1368 286 78 46 chr1 14478196 14478294 -267715370 + L1MEd LINE L1 1073 1166 -4963 1696 218 23 45 chr1 14478294 14478808 -267714856 + MLT1D LTR MaLR 3 505 0 1368 286 78 46 chr1 14478808 14479057 -267714607 + L1MEd LINE L1 1166 1474 -4655 318 179 0 0 chr1 14479038 14479094 -267714570 + HAL1 LINE L1 1600 1655 -852 * 2074 120 0 17 chr1 14479097 14479389 -267714275 - AluSx SINE Alu -21 291 5 242 281 104 54 chr1 14480110 14480533 -267713131 + L1M4 LINE L1 4160 4603 -1543 21 0 0 0 chr1 14480537 14480558 -267713106 + AT_rich Low_complexity Low_complexity 1 21 0 204 155 42 0 chr1 14480733 14480804 -267712860 + (TA)n Simple_repeat Simple_repeat 1 74 0 249 33 0 0 chr1 14481033 14481063 -267712601 + (TG)n Simple_repeat Simple_repeat 2 31 0 2100 136 0 3 chr1 14481162 14481457 -267712207 + AluSx SINE Alu 1 294 -18 25 31 0 0 chr1 14481633 14481665 -267711999 + AT_rich Low_complexity Low_complexity 1 32 0 198 321 57 29 chr1 14481678 14481818 -267711846 - L2 LINE L2 -680 2634 2491 632 243 105 43 chr1 14482002 14482278 -267711386 + LTR16C LTR ERVL 185 477 -14 2164 132 0 0 chr1 14482874 14483169 -267710495 + AluSx SINE Alu 1 295 -17 27 0 0 0 chr1 14483176 14483203 -267710461 + AT_rich Low_complexity Low_complexity 1 27 0 713 157 0 0 chr1 14483235 14483337 -267710327 + FLAM_C SINE Alu 9 110 -33 570 195 0 111 chr1 14583367 14583448 -267610216 + Charlie2 DNA MER1_type 2694 2744 -118 2096 91 3 10 chr1 14583448 14583746 -267609918 - AluSg SINE Alu -14 296 1 570 195 0 111 chr1 14583746 14583854 -267609810 + Charlie2 DNA MER1_type 2744 2862 0 293 231 264 33 chr1 14584068 14584189 -267609475 - MIR SINE MIR -110 152 4 596 265 43 33 chr1 14584192 14584536 -267609128 - L1M4 LINE L1 -715 5463 5121 23 33 0 0 chr1 14584674 14584704 -267608960 + AT_rich Low_complexity Low_complexity 1 30 0 871 163 0 68 chr1 14585364 14585554 -267608110 - FRAM SINE Alu 0 176 1 1713 136 48 48 chr1 14585771 14586065 -267607599 + AluSq SINE Alu 1 294 -19 2156 106 0 0 chr1 14586154 14586446 -267607218 + AluSc SINE Alu 1 292 -17 192 200 0 0 chr1 14587886 14587926 -267605738 + (CA)n Simple_repeat Simple_repeat 1 40 0 2156 108 0 0 chr1 14588184 14588479 -267605185 + AluSg SINE Alu 1 295 -15 271 167 0 0 chr1 14588668 14588716 -267604948 - AluSp/q SINE Alu -1 302 255 2072 68 0 8 chr1 14588908 14589174 -267604490 - AluY SINE Alu -18 293 30 1772 167 0 0 chr1 14589574 14589868 -267603796 + AluSx SINE Alu 1 294 -18 1117 206 61 4 chr1 14590298 14590545 -267603119 + MER31B LTR ERV1 206 466 0 2015 119 10 0 chr1 14590566 14590859 -267602805 + AluSq SINE Alu 1 296 -17 285 327 20 65 chr1 14591402 14591555 -267602109 - L2 LINE L2 -4 3309 3164 2020 109 7 0 chr1 14591572 14591856 -267601808 + AluSx SINE Alu 26 311 -1 2076 97 3 13 chr1 14591920 14592220 -267601444 + AluSc SINE Alu 1 297 -12 349 283 168 0 chr1 14592326 14592439 -267601225 + L2 LINE L2 3179 3310 -3 636 165 0 0 chr1 14592918 14593021 -267600643 + AluSq/x SINE Alu 4 106 -207 1052 121 24 0 chr1 14593121 14593286 -267600378 + AluY SINE Alu 143 311 0 198 275 62 0 chr1 14594355 14594435 -267599229 + MIR SINE MIR 59 143 -119 2073 108 10 0 chr1 14595101 14595397 -267598267 - AluSx SINE Alu -13 299 1 214 298 60 12 chr1 14595951 14596035 -267597629 + L2 LINE L2 3150 3237 -35 372 257 126 14 chr1 14596421 14596635 -267597029 + L2 LINE L2 2844 3081 -232 2436 148 117 40 chr1 14596651 14596902 -267596762 + MLT2B3 LTR ERVL 1 231 -323 2373 58 0 3 chr1 14596902 14597197 -267596467 - AluY SINE Alu -17 294 1 2436 148 117 40 chr1 14597197 14597423 -267596241 + MLT2B3 LTR ERVL 231 515 -39 799 88 66 0 chr1 14597425 14597651 -267596013 + (TCTA)n Simple_repeat Simple_repeat 1 241 0 401 46 6 0 chr1 14597658 14597715 -267595949 + MLT2B3 LTR ERVL 462 554 0 459 320 46 20 chr1 14597731 14597928 -267595736 + L2 LINE L2 3110 3311 -2 392 222 9 0 chr1 14597928 14598036 -267595628 + (TGGG)n Simple_repeat Simple_repeat 4 112 0 1875 91 0 0 chr1 14598913 14599156 -267594508 + AluSq SINE Alu 3 245 -68 819 147 16 0 chr1 14599156 14599285 -267594379 + AluSg/x SINE Alu 175 305 -7 257 274 177 0 chr1 14599469 14599593 -267594071 - L2 LINE L2 0 3313 3168 2402 206 153 0 chr1 14599699 14600268 -267593396 + MER67B LTR ERV1 3 658 -3 1734 169 0 0 chr1 14600700 14600984 -267592680 + AluJb SINE Alu 1 284 -28 1902 151 27 15 chr1 14601051 14601388 -267592276 - L1MB7 LINE L1 -23 6161 5821 27 0 0 0 chr1 14601393 14601420 -267592244 + AT_rich Low_complexity Low_complexity 1 27 0 946 135 0 0 chr1 14601441 14601582 -267592082 - AluJb SINE Alu -171 141 1 1833 181 24 37 chr1 14601589 14601722 -267591942 - L1MB7 LINE L1 -364 5820 5687 1852 155 0 0 chr1 14601722 14602019 -267591645 - AluJb SINE Alu -15 297 1 1833 181 24 37 chr1 14602019 14602266 -267591398 - L1MB7 LINE L1 -497 5687 5445 1459 111 11 89 chr1 14603240 14603311 -267590353 - Tigger7 DNA MER2_type 0 2491 2416 2313 102 0 3 chr1 14603311 14603624 -267590040 + AluSx SINE Alu 1 312 0 1459 111 11 89 chr1 14603624 14603822 -267589842 - Tigger7 DNA MER2_type -75 2416 2243 326 186 71 106 chr1 14603929 14603965 -267589699 - MER5C DNA MER1_type -200 124 88 2224 100 0 0 chr1 14603965 14604266 -267589398 + AluSq SINE Alu 1 301 -12 326 186 71 106 chr1 14604266 14604342 -267589322 - MER5C DNA MER1_type -236 88 16 293 347 140 0 chr1 14604531 14604724 -267588940 + L2 LINE L2 2815 3034 -279 1538 162 79 7 chr1 14604755 14605046 -267588618 - LTR10B LTR ERV1 0 505 176 1005 192 49 5 chr1 14605142 14605345 -267588319 + MER58A DNA MER1_type 5 216 -8 414 260 36 68 chr1 14605378 14605570 -267588094 + L2 LINE L2 3111 3296 -17 2970 122 30 28 chr1 14605571 14605927 -267587737 - L1MB2 LINE L1 -2 6169 5810 2199 97 10 0 chr1 14605927 14606235 -267587429 + AluSp SINE Alu 1 311 -2 2970 122 30 28 chr1 14606235 14606378 -267587286 - L1MB2 LINE L1 -361 5810 5669 676 36 12 0 chr1 14607150 14607234 -267586430 - AluY SINE Alu -16 295 211 1150 230 152 12 chr1 14607237 14607720 -267585944 + MLT1E1 LTR MaLR 4 566 -27 2229 98 3 3 chr1 14607894 14608199 -267585465 - AluSp SINE Alu -8 305 1 1890 128 10 10 chr1 14608199 14608495 -267585169 - AluJo SINE Alu -16 296 1 1035 201 45 59 chr1 14608496 14608554 -267585110 - L1ME1 LINE L1 -4 6174 6117 434 18 18 0 chr1 14608554 14608609 -267585055 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 1035 201 45 59 chr1 14608609 14608902 -267584762 - L1ME1 LINE L1 -61 6117 5798 289 180 0 16 chr1 14608909 14608970 -267584694 + MIR SINE MIR 81 140 -68 1651 166 20 7 chr1 14609574 14609869 -267583795 - AluJb SINE Alu -13 299 1 1281 103 5 0 chr1 14609900 14610085 -267583579 + AluSg/x SINE Alu 119 304 -6 203 346 39 23 chr1 14610675 14610805 -267582859 - MIR3 SINE MIR -6 202 71 2128 118 0 7 chr1 14610806 14611110 -267582554 + AluSx SINE Alu 1 302 -10 878 196 85 88 chr1 14611144 14611450 -267582214 - MLT1J LTR MaLR 0 511 207 2018 103 0 0 chr1 14611458 14611731 -267581933 + AluSx SINE Alu 10 282 -30 33 43 0 0 chr1 14611738 14611785 -267581879 + AT_rich Low_complexity Low_complexity 1 47 0 606 274 30 20 chr1 14611785 14611986 -267581678 - MLT1J LTR MaLR -302 209 7 565 128 0 0 chr1 14612060 14612138 -267581526 + MER30B DNA MER1_type 1 78 -112 1304 108 220 17 chr1 14612139 14612394 -267581270 + AluSg1 SINE Alu 1 302 0 1045 107 31 6 chr1 14612394 14612553 -267581111 + MER30B DNA MER1_type 68 230 0 325 215 174 56 chr1 14612737 14612881 -267580783 - MIR SINE MIR -41 221 61 1053 99 0 0 chr1 14612882 14613024 -267580640 - AluSg/x SINE Alu -15 297 156 2352 73 0 0 chr1 14613289 14613589 -267580075 + AluY SINE Alu 1 300 -11 2056 121 0 3 chr1 14613600 14613906 -267579758 + AluSq SINE Alu 1 305 -8 1823 81 0 4 chr1 14613907 14614142 -267579522 + AluY SINE Alu 1 234 -77 940 172 0 0 chr1 14614921 14615072 -267578592 + AluJb SINE Alu 133 283 -29 685 219 19 32 chr1 14615128 14615283 -267578381 - MIR SINE MIR -21 241 89 2069 97 7 3 chr1 14615326 14615615 -267578049 + AluSx SINE Alu 1 290 -22 2247 100 3 0 chr1 14615639 14615949 -267577715 + AluSp SINE Alu 1 311 -2 409 169 12 0 chr1 14616008 14616091 -267577573 - AluS SINE Alu 0 310 227 569 115 0 0 chr1 14616092 14616170 -267577494 - AluSq/x SINE Alu -187 126 49 341 316 45 65 chr1 14616194 14616274 -267577390 + L2 LINE L2 3121 3201 -71 2164 110 0 7 chr1 14616274 14616584 -267577080 - AluSx SINE Alu -4 308 1 1798 158 0 3 chr1 14616584 14616880 -267576784 - AluSx SINE Alu -16 296 1 341 316 45 65 chr1 14616880 14616953 -267576711 + L2 LINE L2 3199 3272 0 2067 110 7 10 chr1 14617257 14617565 -267576099 + AluSg1 SINE Alu 2 308 -1 1166 170 50 117 chr1 14617580 14617665 -267575999 - MER82 DNA MER2_type -314 339 250 821 154 23 0 chr1 14617665 14617795 -267575869 + FLAM_C SINE Alu 1 133 0 1166 170 50 117 chr1 14617795 14618050 -267575614 - MER82 DNA MER2_type -403 250 22 2222 92 0 10 chr1 14618052 14618356 -267575308 + AluY SINE Alu 1 301 -10 1095 263 92 35 chr1 14618458 14618884 -267574780 + Charlie2b DNA MER1_type 221 670 -2112 1721 161 10 0 chr1 14618970 14619262 -267574402 + AluJo SINE Alu 1 295 -17 478 176 155 7 chr1 14619267 14619409 -267574255 + Charlie2a DNA MER1_type 1486 1648 -1214 2185 45 0 31 chr1 14619422 14619760 -267573904 + AluY SINE Alu 1 329 0 580 240 0 0 chr1 14619775 14619896 -267573768 + FLAM_A SINE Alu 12 132 -10 2264 82 16 0 chr1 14619910 14620214 -267573450 + AluSp SINE Alu 5 313 0 670 235 50 0 chr1 14620218 14620397 -267573267 + Charlie2a DNA MER1_type 1642 1829 -1033 1836 137 42 118 chr1 14620400 14620483 -267573181 + MER44D DNA MER2_type 2 90 -2397 1437 163 41 41 chr1 14620483 14620778 -267572886 + AluJb SINE Alu 1 295 -17 1836 137 42 118 chr1 14620778 14621125 -267572539 + MER44D DNA MER2_type 90 454 -151 1843 142 127 43 chr1 14621138 14621555 -267572109 - LTR10A LTR ERV1 -61 548 97 11824 156 12 20 chr1 14621599 14624774 -267568890 - Harlequin LTR ERV1 -2 6647 1804 267 274 167 0 chr1 14624781 14624865 -267568799 + LTR8 LTR ERV1 160 257 -434 5611 95 18 39 chr1 14624865 14625510 -267568154 - HERV17 LTR ERV1 -5178 1718 1145 2272 69 0 3 chr1 14625510 14625799 -267567865 - AluY SINE Alu -23 288 1 5611 95 18 39 chr1 14625799 14626232 -267567432 - HERV17 LTR ERV1 -5751 1145 704 308 184 39 0 chr1 14626232 14626335 -267567329 + CT-rich Low_complexity Low_complexity 2 108 0 212 186 17 0 chr1 14626369 14626428 -267567236 + CT-rich Low_complexity Low_complexity 2 61 0 1298 168 207 44 chr1 14626677 14627064 -267566600 - LTR7 LTR ERV1 0 450 1 3340 120 14 42 chr1 14627064 14627637 -267566027 - HERVH LTR ERV1 0 7713 7157 * 12186 95 5 1 chr1 14627630 14629270 -267564394 - HERVH LTR ERV1 -1697 6016 4370 4284 130 5 88 chr1 14629259 14630064 -267563600 - HERVH LTR ERV1 -3619 4094 3357 * 8129 204 24 36 chr1 14630064 14632943 -267560721 - HERVH LTR ERV1 -3792 2737 1 846 163 111 62 chr1 14632943 14633331 -267560333 - LTR7 LTR ERV1 0 450 1 387 238 117 0 chr1 14633524 14633668 -267559996 - LTR10A-int LTR ERV1 -7420 365 288 1048 204 43 132 chr1 14633674 14634025 -267559639 - LTR10A-int LTR ERV1 -6335 314 1 1695 166 181 55 chr1 14634034 14634521 -267559143 - LTR10A LTR ERV1 -61 548 1 441 125 0 12 chr1 14634521 14634600 -267559064 + Tigger7 DNA MER2_type 2337 2414 -77 401 181 181 29 chr1 14634617 14634642 -267559022 + Tigger7 DNA MER2_type 2371 2391 -100 2024 144 26 15 chr1 14634642 14634913 -267558751 + MER2 DNA MER2_type 2 279 -65 1609 154 24 14 chr1 14634913 14635205 -267558459 - AluSx SINE Alu -17 295 1 2024 144 26 15 chr1 14635205 14635272 -267558392 + MER2 DNA MER2_type 279 344 0 401 181 181 29 chr1 14635272 14635351 -267558313 + Tigger7 DNA MER2_type 2391 2491 0 985 214 96 102 chr1 14635353 14635876 -267557788 + Charlie2 DNA MER1_type 1833 2354 -508 2280 84 3 0 chr1 14635876 14636172 -267557492 + AluSp SINE Alu 1 297 -16 985 214 96 102 chr1 14636172 14636208 -267557456 + Charlie2 DNA MER1_type 2354 2389 -473 555 317 77 5 chr1 14636360 14636581 -267557083 - MIR SINE MIR 0 262 26 2140 110 7 0 chr1 14636594 14636904 -267556760 - AluSp SINE Alu -1 312 1 2213 102 0 3 chr1 14638563 14638876 -267554788 - AluSp SINE Alu -1 312 1 357 211 102 18 chr1 14639022 14639188 -267554476 - L1MEd LINE L1 -5249 870 691 295 309 27 9 chr1 14639216 14639326 -267554338 - L1MEd LINE L1 -5437 682 571 705 188 161 61 chr1 14639654 14639915 -267553749 - MER113 DNA MER1_type? -116 405 119 384 303 0 0 chr1 14639952 14640041 -267553623 - L1MC4 LINE L1 -1339 6703 6615 1841 172 0 0 chr1 14640045 14640342 -267553322 + AluJo SINE Alu 1 297 -15 1269 219 130 33 chr1 14640746 14641107 -267552557 + MSTD LTR MaLR 1 396 0 2478 80 0 3 chr1 14641312 14641613 -267552051 - AluSg SINE Alu -10 300 1 1951 70 117 0 chr1 14642094 14642377 -267551287 - AluSp SINE Alu 0 313 1 677 280 52 13 chr1 14642693 14642925 -267550739 + MIR SINE MIR 7 247 -15 2113 49 53 0 chr1 14643435 14643712 -267549952 - AluY SINE Alu 0 310 21 1331 245 136 21 chr1 14643763 14644249 -267549415 + MLT1F LTR MaLR 1 542 0 2392 99 0 0 chr1 14644300 14644604 -267549060 + AluY SINE Alu 2 305 -6 537 260 32 26 chr1 14644725 14644879 -267548785 + MIR SINE MIR 52 206 -56 2206 123 0 13 chr1 14645071 14645373 -267548291 + AluSq SINE Alu 1 298 -15 181 333 11 11 chr1 14646739 14646832 -267546832 + L2 LINE L2 2621 2713 -601 2367 76 10 3 chr1 14646835 14647125 -267546539 + AluSc SINE Alu 1 292 -17 2134 88 88 3 chr1 14647125 14647409 -267546255 + AluSq SINE Alu 1 308 -5 829 163 0 34 chr1 14647418 14647565 -267546099 + FLAM_C SINE Alu 1 142 -1 230 257 220 37 chr1 14647565 14647783 -267545881 + L2 LINE L2 2706 2963 -351 374 229 52 0 chr1 14647808 14647904 -267545760 + MER45A DNA AcHobo 77 177 -1 243 319 97 19 chr1 14647905 14648121 -267545543 + L2 LINE L2 2952 3184 -129 1904 152 3 19 chr1 14648554 14648870 -267544794 - AluJo SINE Alu -1 311 1 573 225 0 9 chr1 14649712 14649823 -267543841 + FLAM_C SINE Alu 6 115 -28 310 308 29 96 chr1 14649832 14650072 -267543592 - MIR SINE MIR -33 229 6 305 224 0 0 chr1 14650286 14650344 -267543320 + MER91B DNA MER1_type 3 60 -130 1634 232 71 63 chr1 14650567 14650669 -267542995 - MLT1F LTR MaLR 0 542 442 2386 101 0 3 chr1 14650669 14650976 -267542688 + AluSq SINE Alu 1 306 -7 1634 232 71 63 chr1 14650976 14651411 -267542253 - MLT1F LTR MaLR -100 442 1 1075 83 0 0 chr1 14651451 14651583 -267542081 + AluSp SINE Alu 1 132 -181 2585 84 0 0 chr1 14651587 14651898 -267541766 + AluSp SINE Alu 3 313 0 342 335 63 6 chr1 14652344 14652502 -267541162 + MIR SINE MIR 47 213 -49 278 71 24 0 chr1 14653598 14653640 -267540024 + MER21B LTR ERV1 619 661 -202 1974 101 87 7 chr1 14653664 14653952 -267539712 + AluSx SINE Alu 1 311 -1 696 232 49 22 chr1 14654263 14654487 -267539177 - MER31A LTR ERV1 0 485 256 412 301 30 24 chr1 14654643 14654809 -267538855 - MIR3 SINE MIR -29 179 13 717 182 42 0 chr1 14654834 14654977 -267538687 - MER63 DNA MER1_type -4 1056 908 2316 153 31 27 chr1 14654977 14655117 -267538547 + L1MB5 LINE L1 5690 5828 -346 1531 157 33 62 chr1 14655117 14655422 -267538242 + AluJo SINE Alu 1 296 -16 2316 153 31 27 chr1 14655422 14655727 -267537937 + L1MB5 LINE L1 5828 6137 -37 247 154 0 0 chr1 14656773 14656812 -267536852 + 5S rRNA rRNA 4 42 -79 2377 103 0 3 chr1 14657233 14657535 -267536129 - AluSx SINE Alu -11 301 1 2570 63 0 28 chr1 14658426 14658745 -267534919 - AluY SINE Alu 0 311 2 337 303 56 21 chr1 14658776 14658918 -267534746 - MIR SINE MIR -106 156 10 194 294 59 59 chr1 14659166 14659302 -267534362 + L2 LINE L2 3135 3270 -43 2235 195 68 37 chr1 14660391 14660601 -267533063 + L1MB7 LINE L1 4672 4874 -1300 2559 59 3 3 chr1 14660601 14660904 -267532760 + AluSp SINE Alu 1 303 -10 2235 195 68 37 chr1 14660904 14661588 -267532076 + L1MB7 LINE L1 4874 5605 -569 888 201 0 0 chr1 14661593 14661742 -267531922 + FRAM SINE Alu 5 153 -23 1928 145 17 20 chr1 14661750 14662101 -267531563 + L1MB7 LINE L1 5816 6165 -19 2391 80 0 0 chr1 14662218 14662506 -267531158 + AluSg SINE Alu 11 298 -12 2051 121 0 0 chr1 14663320 14663600 -267530064 + AluSx SINE Alu 1 280 -32 240 35 0 0 chr1 14663600 14663629 -267530035 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 416 316 93 0 chr1 14663737 14663974 -267529690 + MIR SINE MIR 4 262 0 245 276 81 11 chr1 14664374 14664461 -267529203 + L2 LINE L2 3172 3264 -8 1894 131 51 0 chr1 14664508 14664783 -267528881 + AluJb SINE Alu 1 289 -23 317 264 74 40 chr1 14664785 14664933 -267528731 - L1MCa LINE L1 -4372 2054 1902 195 42 0 0 chr1 14665318 14665342 -267528322 + (TG)n Simple_repeat Simple_repeat 2 25 0 2046 114 55 0 chr1 14666397 14666687 -267526977 - AluSg SINE Alu -4 306 1 22 0 0 0 chr1 14666689 14666711 -267526953 + AT_rich Low_complexity Low_complexity 1 22 0 341 273 87 31 chr1 14668362 14668523 -267525141 - L2 LINE L2 -4 3309 3140 44 35 0 0 chr1 14669900 14669958 -267523706 + AT_rich Low_complexity Low_complexity 1 58 0 201 225 14 84 chr1 14670703 14670774 -267522890 + MER5A DNA MER1_type 40 105 -84 822 142 41 41 chr1 14671943 14672112 -267521552 - MER5A DNA MER1_type -15 174 6 1662 179 4 15 chr1 14672517 14672790 -267520874 + AluJo SINE Alu 8 277 -35 23 33 0 0 chr1 14672795 14672825 -267520839 + AT_rich Low_complexity Low_complexity 1 30 0 2071 204 66 0 chr1 14672934 14673376 -267520288 + LTR51 LTR ERV1 201 671 0 256 167 24 119 chr1 14673443 14673527 -267520137 - Charlie2 DNA MER1_type -2503 279 204 2554 69 3 0 chr1 14673589 14673893 -267519771 + AluSp SINE Alu 1 305 -8 928 140 7 0 chr1 14673899 14674035 -267519629 + FLAM_C SINE Alu 1 137 -6 271 341 0 0 chr1 14674046 14674134 -267519530 - Charlie2 DNA MER1_type -2738 124 37 2360 73 0 0 chr1 14674843 14675146 -267518518 - AluSc SINE Alu 0 307 5 365 315 51 35 chr1 14676905 14677102 -267516562 - L2 LINE L2 -1 3312 3113 287 278 10 31 chr1 14677150 14677247 -267516417 + Charlie2 DNA MER1_type 49 143 -2639 264 195 12 24 chr1 14677362 14677444 -267516220 + CT-rich Low_complexity Low_complexity 3 83 0 339 88 0 44 chr1 14677471 14677539 -267516125 + (TCCCC)n Simple_repeat Simple_repeat 1 65 0 2057 123 0 7 chr1 14677549 14677826 -267515838 - AluSx SINE Alu -37 275 1 229 333 56 0 chr1 14678469 14678577 -267515087 + MIR SINE MIR 38 151 -57 2248 74 7 7 chr1 14678697 14679021 -267514643 + AluSx SINE Alu 1 324 0 189 0 0 0 chr1 14679986 14680007 -267513657 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2056 116 0 45 chr1 14680025 14680336 -267513328 + AluY SINE Alu 1 297 -14 1611 169 16 53 chr1 14680338 14680474 -267513190 + AluJo SINE Alu 1 141 -171 207 0 0 0 chr1 14680474 14680497 -267513167 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1611 169 16 53 chr1 14680497 14680679 -267512985 + AluJo SINE Alu 141 307 -5 1251 139 0 0 chr1 14680683 14680863 -267512801 + AluSg/x SINE Alu 127 306 -6 542 161 104 17 chr1 14680863 14681026 -267512638 - L1MC2 LINE L1 -8 7777 6191 1120 224 22 44 chr1 14681114 14681431 -267512233 - L1MC2 LINE L1 -121 6223 5914 3297 130 28 28 chr1 14681488 14681969 -267511695 - MER4A LTR ERV1 0 600 117 2314 88 0 49 chr1 14681969 14682297 -267511367 - AluSx SINE Alu 0 312 1 3297 130 28 28 chr1 14682297 14682415 -267511249 - MER4A LTR ERV1 -482 118 1 543 258 65 21 chr1 14682527 14682713 -267510951 + LTR33 LTR ERVL 321 514 -7 2063 187 53 29 chr1 14682763 14682867 -267510797 + MLT1C LTR MaLR 1 101 -366 2346 105 0 7 chr1 14682867 14683171 -267510493 + AluSx SINE Alu 1 302 -10 2063 187 53 29 chr1 14683171 14683515 -267510149 + MLT1C LTR MaLR 101 460 -7 2254 104 0 3 chr1 14683629 14683916 -267509748 - AluSg SINE Alu -24 286 1 228 35 0 0 chr1 14684006 14684035 -267509629 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 735 208 33 47 chr1 14684155 14684278 -267509386 - Charlie5 DNA MER1_type -12 2573 2453 2093 99 54 7 chr1 14684278 14684572 -267509092 - AluSp SINE Alu -5 308 1 735 208 33 47 chr1 14684572 14684660 -267509004 - Charlie5 DNA MER1_type -132 2453 2365 216 244 98 12 chr1 14684687 14684769 -267508895 - MIR SINE MIR -127 135 47 924 330 29 10 chr1 14685046 14685630 -267508034 + L2 LINE L2 2712 3313 0 1785 146 7 28 chr1 14685797 14686085 -267507579 + AluJo SINE Alu 1 282 -30 766 303 88 14 chr1 14686326 14686623 -267507041 + L3 LINE CR1 1202 1520 -57 392 321 36 7 chr1 14687437 14687577 -267506087 - MIR3 SINE MIR -35 173 30 574 330 51 9 chr1 14687624 14687839 -267505825 + MIR SINE MIR 5 228 -34 238 313 0 0 chr1 14688018 14688085 -267505579 + MIR SINE MIR 30 96 -112 1502 193 179 24 chr1 14688088 14688193 -267505471 - MLT1D LTR MaLR 0 505 418 2217 126 0 0 chr1 14688193 14688486 -267505178 - AluSg SINE Alu -17 293 1 1502 193 179 24 chr1 14688486 14688799 -267504865 - MLT1D LTR MaLR -87 418 22 2237 120 0 3 chr1 14689550 14689850 -267503814 - AluSx SINE Alu -13 299 1 1832 175 21 13 chr1 14689908 14690291 -267503373 + L1MB3 LINE L1 5756 6141 -42 2419 100 0 0 chr1 14690293 14690603 -267503061 + AluSx SINE Alu 1 310 -2 288 151 0 82 chr1 14690615 14690688 -267502976 - L1MB3 LINE L1 -33 6150 6084 1338 141 5 18 chr1 14690722 14690942 -267502722 + AluJb SINE Alu 85 301 -11 765 227 45 0 chr1 14691012 14691188 -267502476 - MER20 DNA MER1_type -35 184 1 262 339 9 0 chr1 14691662 14691771 -267501893 + (TGG)n Simple_repeat Simple_repeat 2 111 0 2483 87 0 6 chr1 14691810 14692121 -267501543 + AluSx SINE Alu 1 309 -3 392 182 159 102 chr1 14692715 14692891 -267500773 + MIR3 SINE MIR 20 205 -3 390 305 134 0 chr1 14693182 14693346 -267500318 - L1ME LINE L1 -306 5815 5630 436 317 30 6 chr1 14693460 14693627 -267500037 + L1ME4a LINE L1 5334 5504 -658 550 229 185 15 chr1 14693642 14693699 -267499965 + L1ME4a LINE L1 5621 5667 -454 2278 103 0 10 chr1 14693699 14694000 -267499664 + AluSg SINE Alu 1 298 -12 550 229 185 15 chr1 14694000 14694147 -267499517 + L1ME4a LINE L1 5667 5860 -261 408 20 0 0 chr1 14694203 14694252 -267499412 + (CA)n Simple_repeat Simple_repeat 2 50 0 501 277 0 8 chr1 14695047 14695177 -267498487 - LTR67 LTR ERVL -3 554 426 2173 138 0 0 chr1 14695389 14695687 -267497977 + AluJb SINE Alu 6 303 -9 1438 236 41 51 chr1 14695817 14696109 -267497555 + MLT1C LTR MaLR 6 293 -174 1852 70 0 26 chr1 14696109 14696339 -267497325 + AluSg/x SINE Alu 73 296 -16 1438 236 41 51 chr1 14696339 14696513 -267497151 + MLT1C LTR MaLR 293 467 0 2178 99 37 0 chr1 14696686 14696980 -267496684 - AluY SINE Alu -6 305 1 2413 93 3 0 chr1 14696981 14697283 -267496381 - AluSp SINE Alu -10 303 1 600 317 49 8 chr1 14697304 14697550 -267496114 + MIR SINE MIR 1 256 -6 375 231 320 10 chr1 14697857 14698260 -267495404 - L2 LINE L2 -51 3262 2721 288 137 0 0 chr1 14698310 14698361 -267495303 + (TCCCC)n Simple_repeat Simple_repeat 4 54 0 216 288 27 0 chr1 14698476 14698549 -267495115 - MIR SINE MIR -15 247 173 2290 92 9 28 chr1 14698830 14699147 -267494517 + AluSx SINE Alu 1 311 -1 639 293 27 22 chr1 14699249 14699474 -267494190 + MIR SINE MIR 31 256 -6 1914 166 0 10 chr1 14699677 14699984 -267493680 - AluSx SINE Alu -8 304 1 198 191 0 0 chr1 14700094 14700141 -267493523 + CT-rich Low_complexity Low_complexity 3 49 0 974 200 5 0 chr1 14700266 14700451 -267493213 - MLT1B LTR MaLR 0 390 205 232 264 0 0 chr1 14700426 14700498 -267493166 - MLT1A2 LTR MaLR -131 265 194 * 183 186 0 0 chr1 14700498 14700541 -267493123 + GA-rich Low_complexity Low_complexity 2 44 0 2514 70 0 13 chr1 14700582 14700897 -267492767 + AluY SINE Alu 1 311 0 308 218 0 0 chr1 14700919 14700974 -267492690 + AluJ/monomer SINE Alu 1 55 -246 1086 126 75 13 chr1 14700975 14701134 -267492530 + AluSg/x SINE Alu 113 281 -31 698 213 13 32 chr1 14701154 14701309 -267492355 - MLT1A2 LTR MaLR -222 152 1 693 146 0 46 chr1 14701320 14701413 -267492251 + FLAM_C SINE Alu 2 89 -223 2094 115 58 11 chr1 14701413 14701761 -267491903 - THE1B LTR MaLR 0 364 1 693 146 0 46 chr1 14701761 14701797 -267491867 + FLAM_C SINE Alu 89 125 -187 921 172 21 82 chr1 14701850 14701918 -267491746 + MER20 DNA MER1_type 1 72 -147 2225 123 0 0 chr1 14701918 14702218 -267491446 - AluSq SINE Alu -11 302 3 921 172 21 82 chr1 14702218 14702382 -267491282 + MER20 DNA MER1_type 72 219 0 24 0 0 0 chr1 14703153 14703177 -267490487 + AT_rich Low_complexity Low_complexity 1 24 0 736 273 92 4 chr1 14703817 14704044 -267489620 + MIR SINE MIR 16 262 0 436 307 241 10 chr1 14704358 14704450 -267489214 + L2 LINE L2 2829 2898 -415 1736 173 50 0 chr1 14704450 14704727 -267488937 - AluJo SINE Alu -21 291 1 436 307 241 10 chr1 14704727 14705028 -267488636 + L2 LINE L2 2898 3313 0 193 214 18 36 chr1 14705031 14705087 -267488577 + L2 LINE L2 3180 3234 -79 1763 95 0 26 chr1 14705166 14705398 -267488266 - AluSg/x SINE Alu -18 294 69 2176 112 34 0 chr1 14705654 14705949 -267487715 + AluSx SINE Alu 1 305 -7 1795 194 13 27 chr1 14706977 14707349 -267486315 + MLT1A2 LTR MaLR 1 367 -7 444 328 48 0 chr1 14708029 14708215 -267485449 - L2 LINE L2 -13 3300 3106 1280 178 53 41 chr1 14708268 14708680 -267484984 - MLT2B1 LTR ERVL -7 407 1 2508 68 0 13 chr1 14709355 14709663 -267484001 + AluY SINE Alu 1 304 -7 429 252 39 96 chr1 14710130 14710299 -267483365 + L2 LINE L2 3096 3250 -63 2499 91 0 0 chr1 14710299 14710608 -267483056 + AluSg SINE Alu 1 309 -1 429 252 39 96 chr1 14710608 14710668 -267482996 + L2 LINE L2 3250 3312 -1 270 298 71 0 chr1 14710718 14710802 -267482862 - MIR SINE MIR -78 184 95 278 300 42 110 chr1 14710870 14711133 -267482531 - MIR SINE MIR -4 258 14 692 284 96 22 chr1 14711423 14711902 -267481762 + MER115 DNA AcHobo 2 556 -137 895 65 9 0 chr1 14711903 14712010 -267481654 + AluSp SINE Alu 1 108 -205 1969 222 121 56 chr1 14712131 14712241 -267481423 - MER63D DNA MER1_type -144 917 816 491 15 0 31 chr1 14712241 14712306 -267481358 + (AATAG)n Simple_repeat Simple_repeat 3 65 0 1969 222 121 56 chr1 14712306 14712491 -267481173 - MER63D DNA MER1_type -245 816 644 2346 125 0 0 chr1 14712491 14712803 -267480861 + AluSx SINE Alu 1 312 0 1969 222 121 56 chr1 14712803 14713367 -267480297 - MER63D DNA MER1_type -417 644 1 2305 125 0 3 chr1 14713471 14713782 -267479882 + AluSx SINE Alu 1 310 -2 1913 136 31 7 chr1 14713941 14714227 -267479437 - AluSg SINE Alu -7 303 11 464 183 39 0 chr1 14714416 14714520 -267479144 + L1MB7 LINE L1 5774 5881 -303 778 138 15 0 chr1 14714627 14714757 -267478907 + FLAM_C SINE Alu 1 132 -1 2421 43 0 46 chr1 14715106 14715411 -267478253 - AluY SINE Alu -20 291 1 2626 56 0 3 chr1 14715692 14715997 -267477667 - AluY SINE Alu -7 304 1 2472 78 3 10 chr1 14716556 14716864 -267476800 - AluSp SINE Alu -7 306 1 233 75 25 0 chr1 14717058 14717098 -267476566 + (GA)n Simple_repeat Simple_repeat 2 42 0 2094 106 29 0 chr1 14717294 14717607 -267476057 + AluSx SINE Alu 1 321 0 235 338 76 55 chr1 14717616 14717761 -267475903 - L2 LINE L2 -20 3252 3105 330 296 78 9 chr1 14718442 14718557 -267475107 - L1ME4a LINE L1 -175 5946 5824 2568 37 0 3 chr1 14718562 14718857 -267474807 - AluY SINE Alu -17 294 1 1920 153 0 45 chr1 14718860 14719174 -267474490 - AluJb SINE Alu -12 300 1 1535 235 52 10 chr1 14719181 14719305 -267474359 - L1ME1 LINE L1 -114 6052 5929 504 326 68 28 chr1 14719305 14719630 -267474034 - L1PB1 LINE L1 -232 5919 5582 2375 57 47 3 chr1 14719700 14719998 -267473666 + AluY SINE Alu 1 311 0 183 250 54 18 chr1 14720403 14720459 -267473205 + MIR SINE MIR 18 75 -133 198 314 10 111 chr1 14720500 14720707 -267472957 + L2 LINE L2 2897 3082 -190 2425 94 0 0 chr1 14720879 14721178 -267472486 - AluSg SINE Alu -9 301 3 236 200 20 0 chr1 14721637 14721687 -267471977 + MLT1L LTR MaLR 3 53 -562 2112 154 0 0 chr1 14722032 14722343 -267471321 + AluSx SINE Alu 1 311 -1 412 278 0 35 chr1 14722420 14722535 -267471129 + L2 LINE L2 3202 3312 -1 * 514 226 203 0 chr1 14722531 14722708 -267470956 + MIR SINE MIR 34 246 -16 1977 119 0 38 chr1 14722714 14723037 -267470627 - AluY SINE Alu 0 313 2 253 296 82 31 chr1 14724257 14724355 -267469309 - L2 LINE L2 0 3272 3170 182 282 105 89 chr1 14724788 14724912 -267468752 + L2 LINE L2 3136 3261 -11 563 324 34 10 chr1 14724977 14725181 -267468483 - MIR SINE MIR -37 225 17 1831 161 0 35 chr1 14725882 14726192 -267467472 + AluJb SINE Alu 6 304 -8 347 342 68 47 chr1 14726194 14726621 -267467043 - L2 LINE L2 -74 3239 2804 1125 227 71 32 chr1 14726653 14727161 -267466503 - MLT1E LTR MaLR 0 593 2 440 313 76 20 chr1 14727163 14727361 -267466303 - L2 LINE L2 -556 2758 2550 610 244 44 19 chr1 14727979 14728139 -267465525 - MIR SINE MIR -12 250 87 218 341 0 33 chr1 14729172 14729263 -267464401 + MIR3 SINE MIR 7 94 -114 250 272 65 33 chr1 14729958 14730050 -267463614 - MIR SINE MIR -90 118 24 263 340 71 0 chr1 14731159 14731300 -267462364 - MIR SINE MIR -66 196 46 240 278 29 23 chr1 14731924 14732097 -267461567 + (CCCCG)n Simple_repeat Simple_repeat 1 174 0 30 77 0 0 chr1 14732126 14732191 -267461473 + GC_rich Low_complexity Low_complexity 1 65 0 429 244 72 23 chr1 14734210 14734359 -267459305 + MIR3 SINE MIR 16 171 -37 275 357 62 27 chr1 14734355 14734544 -267459120 + MIR SINE MIR 20 206 -56 * 404 262 70 58 chr1 14734900 14735072 -267458592 + MIR SINE MIR 79 252 -10 725 256 121 0 chr1 14735133 14735340 -267458324 + MIR SINE MIR 21 252 -10 351 269 11 0 chr1 14735373 14735466 -267458198 - MIR SINE MIR -91 117 24 462 229 22 89 chr1 14735698 14735877 -267457787 + MER5A DNA MER1_type 3 169 -20 205 397 32 0 chr1 14735906 14736032 -267457632 + MIR3 SINE MIR 73 202 -6 519 299 153 26 chr1 14737062 14737495 -267456169 - L1ME4a LINE L1 -5 6116 5739 2187 117 0 7 chr1 14737495 14737793 -267455871 - AluSx SINE Alu -14 298 3 519 299 153 26 chr1 14737793 14737891 -267455773 - L1ME4a LINE L1 -382 5739 5655 2400 104 0 0 chr1 14737891 14738198 -267455466 - AluSx SINE Alu -5 307 1 519 299 153 26 chr1 14738198 14738320 -267455344 - L1ME4a LINE L1 -466 5655 5379 2494 87 0 3 chr1 14738989 14739300 -267454364 + AluSx SINE Alu 1 310 -2 427 255 159 36 chr1 14739749 14740178 -267453486 + L2 LINE L2 2737 3216 -97 300 239 60 34 chr1 14740866 14740983 -267452681 - L1M4 LINE L1 -2954 3192 3073 399 41 0 0 chr1 14740996 14741045 -267452619 + (TCCCC)n Simple_repeat Simple_repeat 2 50 0 1110 52 0 29 chr1 14941148 14941284 -267252380 - AluY SINE Alu -179 132 1 225 289 0 12 chr1 14942666 14942749 -267250915 + MIR3 SINE MIR 82 163 -45 1017 152 13 89 chr1 14942813 14943050 -267250614 + MER20 DNA MER1_type 1 219 0 663 282 83 23 chr1 14944436 14944737 -267248927 + L2 LINE L2 2455 2773 -541 326 212 0 35 chr1 14944763 14944848 -267248816 + MER53 DNA DNA 4 85 -104 258 169 0 62 chr1 14944792 14944857 -267248807 - MER53 DNA DNA -22 167 107 * 1914 125 28 7 chr1 14945004 14945291 -267248373 - AluSp SINE Alu -20 293 1 894 292 122 11 chr1 14945336 14945788 -267247876 + L2 LINE L2 2812 3313 0 380 282 118 40 chr1 14945976 14946221 -267247443 + MIR SINE MIR 2 256 -6 277 286 44 11 chr1 14946990 14947081 -267246583 + MLT1G LTR MaLR 497 590 0 40 49 0 0 chr1 14947419 14947480 -267246184 + AT_rich Low_complexity Low_complexity 1 61 0 405 0 0 0 chr1 14947512 14947557 -267246107 + (TA)n Simple_repeat Simple_repeat 1 45 0 260 313 20 60 chr1 14947612 14947762 -267245902 + MIR SINE MIR 35 178 -84 283 250 14 0 chr1 14948184 14948256 -267245408 - MIR SINE MIR -141 121 49 432 189 47 28 chr1 14949143 14949249 -267244415 - MLT1K LTR MaLR -144 444 337 710 247 37 16 chr1 14949281 14949471 -267244193 + MLT1K LTR MaLR 107 300 -288 690 269 25 49 chr1 14949861 14950106 -267243558 + MLT1K LTR MaLR 12 250 -338 2321 92 0 0 chr1 14950365 14950657 -267243007 + AluSq SINE Alu 1 292 -21 2575 109 18 90 chr1 14951764 14952146 -267241518 + MSTB LTR MaLR 2 347 -79 1813 151 44 0 chr1 14952146 14952418 -267241246 + AluJb SINE Alu 1 284 -28 2575 109 18 90 chr1 14952418 14952492 -267241172 + MSTB LTR MaLR 347 425 -1 227 284 84 32 chr1 14952949 14953044 -267240620 + MIR SINE MIR 42 141 -121 279 0 0 0 chr1 14953798 14953829 -267239835 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4841 40 0 3 chr1 14953829 14954402 -267239262 - L1PA4 LINE L1 -18 6137 5567 327 295 58 26 chr1 14955473 14955629 -267238035 - MER117 DNA MER1_type -31 166 6 2297 111 0 0 chr1 14955706 14956013 -267237651 + AluSx SINE Alu 1 307 -5 2280 105 0 3 chr1 14957571 14957866 -267235798 + AluSx SINE Alu 1 294 -18 432 246 51 34 chr1 14957952 14958070 -267235594 + L2 LINE L2 3148 3267 -5 888 187 14 51 chr1 14958241 14958455 -267235209 + MER3 DNA MER1_type 4 209 0 204 314 51 63 chr1 14958504 14958679 -267234985 + MIR SINE MIR 48 220 -42 996 226 122 23 chr1 14959335 14959643 -267234021 - MLT1A1 LTR MaLR -8 356 19 2606 228 57 5 chr1 14959868 14960501 -267233163 - L1MB7 LINE L1 -9 6175 5510 448 193 136 36 chr1 14962537 14962677 -267230987 + MLT1K LTR MaLR 419 572 -16 311 233 35 12 chr1 14963191 14963277 -267230387 + MIR SINE MIR 34 121 -87 2148 121 17 0 chr1 14963351 14963649 -267230015 - AluSx SINE Alu -9 303 1 295 306 184 10 chr1 14963824 14964030 -267229634 + MIR SINE MIR 19 260 -2 32 0 0 0 chr1 14964312 14964344 -267229320 + AT_rich Low_complexity Low_complexity 1 32 0 336 102 0 0 chr1 14965064 14965113 -267228551 + (T)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr1 14965475 14965496 -267228168 + AT_rich Low_complexity Low_complexity 1 21 0 798 145 0 0 chr1 14965496 14965613 -267228051 - FLAM_C SINE Alu -16 117 1 713 321 4 17 chr1 14966109 14966346 -267227318 + MIR SINE MIR 14 247 -15 1242 217 51 65 chr1 14966349 14966763 -267226901 - MLT1I LTR MaLR 0 409 2 2338 26 0 0 chr1 14967316 14967589 -267226075 - L1PA4 LINE L1 -1 6154 5882 259 266 0 0 chr1 14969172 14969236 -267224428 + Charlie8 DNA MER1_type 115 178 -2239 204 260 41 0 chr1 14969884 14969957 -267223707 + CT-rich Low_complexity Low_complexity 4 79 0 296 243 46 25 chr1 14970422 14970533 -267223131 + MIR SINE MIR 70 184 -63 374 308 17 0 chr1 14970734 14970851 -267222813 + MIR3 SINE MIR 36 154 -54 190 263 18 35 chr1 14971252 14971309 -267222355 + MIR SINE MIR 27 82 -180 1941 80 8 0 chr1 14971314 14971551 -267222113 + AluSx SINE Alu 48 286 -26 362 250 10 10 chr1 14971556 14971660 -267222004 + MIR SINE MIR 146 249 -13 204 125 0 0 chr1 14971665 14971697 -267221967 + (ATG)n Simple_repeat Simple_repeat 1 32 0 284 235 25 12 chr1 14971698 14971779 -267221885 + GA-rich Low_complexity Low_complexity 1 82 0 2351 92 3 7 chr1 14972590 14972894 -267220770 + AluSq SINE Alu 2 304 -9 673 213 41 24 chr1 14973950 14974119 -267219545 - HERVL74 LTR ERVL -4115 1570 1399 194 97 0 0 chr1 14974138 14974169 -267219495 + L2 LINE L2 3283 3313 0 267 31 0 0 chr1 14974534 14974566 -267219098 + (TG)n Simple_repeat Simple_repeat 2 33 0 599 304 0 0 chr1 14974760 14974928 -267218736 + MER117 DNA MER1_type 1 168 -29 2218 116 42 33 chr1 14976508 14976869 -267216795 + THE1B LTR MaLR 1 364 0 1862 160 67 81 chr1 14978538 14978763 -267214901 - MER66B LTR ERV1 0 486 259 2288 99 0 0 chr1 14978763 14979056 -267214608 - AluSg SINE Alu -11 299 7 1862 160 67 81 chr1 14979056 14979323 -267214341 - MER66B LTR ERV1 -227 259 1 278 116 0 5 chr1 14979743 14979798 -267213866 - Alu SINE Alu -261 40 1 181 323 16 0 chr1 14979799 14979861 -267213803 - MIR SINE MIR -84 178 116 258 278 214 16 chr1 14980032 14980219 -267213445 + MIR SINE MIR 28 251 -11 264 256 13 26 chr1 14980562 14980640 -267213024 + L2 LINE L2 3150 3226 -46 213 94 0 0 chr1 14980660 14980692 -267212972 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1847 160 72 19 chr1 14980838 14981213 -267212451 - L1MB7 LINE L1 -5 6179 5785 2181 205 29 86 chr1 14981224 14981853 -267211811 - L1MB7 LINE L1 -1539 4607 4016 459 0 0 0 chr1 14981853 14981904 -267211760 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2181 205 29 86 chr1 14981904 14981937 -267211727 - L1MB7 LINE L1 -2130 4016 3983 1955 225 38 33 chr1 14981918 14982527 -267211137 - L1MB7 LINE L1 -2537 3609 2998 * 383 281 38 19 chr1 14982638 14982798 -267210866 + MER103 DNA DNA 2 164 -2 666 189 106 76 chr1 14982824 14983088 -267210576 + ORSL DNA AcHobo 1 272 -3 481 128 39 39 chr1 14984434 14984613 -267209051 + (CA)n Simple_repeat Simple_repeat 2 180 0 569 283 139 28 chr1 14984661 14985085 -267208579 + L2 LINE L2 2842 3312 -1 254 366 55 12 chr1 14985869 14986033 -267207631 - L2 LINE L2 0 3272 3102 289 102 34 17 chr1 14988268 14988327 -267205337 + CT-rich Low_complexity Low_complexity 3 62 0 211 114 0 0 chr1 14989332 14989367 -267204297 - MIR SINE MIR -117 145 111 290 165 10 155 chr1 14989372 14989404 -267204260 - Charlie8 DNA MER1_type -176 165 130 1611 153 67 8 chr1 14989404 14989672 -267203992 + AluSx SINE Alu 1 284 -28 290 165 10 155 chr1 14989672 14989736 -267203928 - Charlie8 DNA MER1_type -211 130 83 341 272 98 54 chr1 14991002 14991186 -267202478 - MIR SINE MIR -50 212 21 * 404 280 53 13 chr1 14991177 14991327 -267202337 + MIR SINE MIR 39 194 -68 210 300 0 62 chr1 14992068 14992148 -267201516 - MIR SINE MIR -54 208 134 365 247 99 103 chr1 14992338 14992561 -267201103 + MIR SINE MIR 38 259 -3 2363 84 0 0 chr1 14992579 14992888 -267200776 + AluY SINE Alu 3 311 0 2116 92 3 0 chr1 14993427 14993748 -267199916 + AluSp SINE Alu 1 322 0 234 257 0 105 chr1 14993882 14993987 -267199677 - MIR SINE MIR -7 255 162 * 2689 254 115 33 chr1 14993939 14995344 -267198320 + L2 LINE L2 1789 3301 -12 285 247 65 110 chr1 14995346 14995500 -267198164 - MIR3 SINE MIR -40 168 22 286 302 35 26 chr1 14995584 14995700 -267197964 + MIR3 SINE MIR 92 208 0 342 327 36 0 chr1 14996122 14996232 -267197432 + L2 LINE L2 3127 3240 -32 794 309 8 27 chr1 14996239 14996495 -267197169 - MIR SINE MIR -10 252 2 369 240 163 56 chr1 14996645 14996933 -267196731 - LTR16A LTR ERVL -66 384 73 262 350 28 56 chr1 14996999 14997179 -267196485 - MIR SINE MIR -51 211 37 585 279 166 57 chr1 14997278 14997791 -267195873 + MLT1K LTR MaLR 1 569 -19 2195 165 5 30 chr1 14997791 14997880 -267195784 + MLT1B LTR MaLR 1 91 -299 2063 102 7 3 chr1 14997880 14998173 -267195491 - AluSp SINE Alu -19 294 1 2195 165 5 30 chr1 14998173 14998483 -267195181 + MLT1B LTR MaLR 91 390 0 313 217 91 86 chr1 14998524 14998722 -267194942 - MLT1H LTR MaLR 0 549 344 263 157 23 16 chr1 14998822 14998903 -267194761 - MLT1I LTR MaLR -289 120 73 180 194 0 0 chr1 14999563 14999594 -267194070 - L2 LINE L2 -9 3304 3274 331 227 0 27 chr1 14999668 14999743 -267193921 + MIR3 SINE MIR 93 165 -43 1464 178 0 48 chr1 14999743 15000052 -267193612 - AluJo SINE Alu 0 312 19 2311 146 37 51 chr1 15000325 15000384 -267193280 - MSTB LTR MaLR 0 426 368 2307 97 0 0 chr1 15000384 15000692 -267192972 + AluSx SINE Alu 1 308 -4 2311 146 37 51 chr1 15000692 15001064 -267192600 - MSTB LTR MaLR -58 368 1 589 249 12 29 chr1 15001203 15001376 -267192288 + MIR SINE MIR 5 174 -88 355 226 38 47 chr1 15001769 15001875 -267191789 + MER91A DNA MER1_type 82 186 -10 201 254 51 0 chr1 15003892 15003951 -267189713 + (CACCAT)n Simple_repeat Simple_repeat 3 64 0 670 299 50 14 chr1 15003954 15004175 -267189489 - MIR SINE MIR -10 252 24 288 0 0 0 chr1 15004649 15004681 -267188983 + (CA)n Simple_repeat Simple_repeat 2 33 0 403 228 52 59 chr1 15005639 15005775 -267187889 - MER5A DNA MER1_type 0 189 55 277 304 104 32 chr1 15006284 15006409 -267187255 + MIR SINE MIR 79 212 -50 221 320 21 10 chr1 15006946 15007043 -267186621 - L2 LINE L2 -297 3016 2919 189 309 96 52 chr1 15007170 15007306 -267186358 + MIR3 SINE MIR 40 181 -27 465 259 0 36 chr1 15007334 15007473 -267186191 - MER94 DNA DNA 0 134 1 1845 108 0 0 chr1 15008130 15008388 -267185276 + AluSg1 SINE Alu 36 293 -16 366 146 5 0 chr1 15008491 15008555 -267185109 + L1M4 LINE L1 5543 5608 -566 2159 95 3 13 chr1 15008626 15008941 -267184723 + AluSx SINE Alu 1 312 0 190 328 61 46 chr1 15009349 15009480 -267184184 - L2 LINE L2 -18 3254 3122 261 0 0 0 chr1 15009539 15009568 -267184096 + (CA)n Simple_repeat Simple_repeat 1 29 0 3479 140 45 13 chr1 15009662 15010263 -267183401 - L1MB5 LINE L1 0 6174 5555 292 224 30 0 chr1 15010387 15010454 -267183210 + tRNA-Ile-ATT tRNA tRNA 5 73 -4 369 245 66 38 chr1 15010631 15010781 -267182883 + MIR SINE MIR 17 170 -63 282 143 0 0 chr1 15011966 15012015 -267181649 + (TCC)n Simple_repeat Simple_repeat 1 49 0 25 31 0 0 chr1 15012146 15012178 -267181486 + GC_rich Low_complexity Low_complexity 1 32 0 39 50 0 0 chr1 15012349 15012409 -267181255 + GC_rich Low_complexity Low_complexity 1 60 0 198 0 0 0 chr1 15013897 15013919 -267179745 + (A)n Simple_repeat Simple_repeat 1 22 0 304 271 34 8 chr1 15014368 15014486 -267179178 + L1ME4a LINE L1 6001 6121 0 2126 129 11 107 chr1 15018585 15019026 -267174638 - Tigger2a DNA MER2_type -34 400 2 251 294 110 44 chr1 15019031 15019167 -267174497 - MIR SINE MIR -115 147 3 * 669 253 95 59 chr1 15019167 15019359 -267174305 - MIR SINE MIR -50 212 13 1272 170 5 9 chr1 15019941 15020159 -267173505 - MER20 DNA MER1_type -1 218 2 530 225 42 25 chr1 15020200 15020320 -267173344 + L2 LINE L2 3192 3313 0 1001 249 11 35 chr1 15020401 15020662 -267173002 - MIR SINE MIR 0 262 8 474 286 67 52 chr1 15021108 15021318 -267172346 - MIR SINE MIR -3 259 47 231 257 14 14 chr1 15023026 15023099 -267170565 - MIR SINE MIR -66 142 72 2092 71 0 54 chr1 15023423 15023753 -267169911 - AluY SINE Alu 0 314 1 1489 161 0 8 chr1 15024681 15024936 -267168728 + AluJo SINE Alu 47 299 -13 1046 204 0 0 chr1 15025063 15025244 -267168420 - MER58A DNA MER1_type -2 222 42 237 114 0 0 chr1 15025528 15025563 -267168101 - tRNA-Thr-ACA tRNA tRNA -41 35 1 201 220 60 0 chr1 15025631 15025681 -267167983 + MIR SINE MIR 94 146 -62 199 286 78 7 chr1 15025784 15025860 -267167804 + MIR SINE MIR 113 202 -60 716 190 140 45 chr1 15025860 15026060 -267167604 - MER20 DNA MER1_type 0 219 1 199 286 78 7 chr1 15026060 15026096 -267167568 + MIR SINE MIR 202 234 -28 464 301 71 23 chr1 15028052 15028298 -267165366 + MIR SINE MIR 4 253 -9 198 242 32 48 chr1 15028375 15028437 -267165227 - L2 LINE L2 -10 3262 3202 217 175 32 48 chr1 15028488 15028551 -267165113 + MIR SINE MIR 16 77 -131 1891 144 7 10 chr1 15028573 15028871 -267164793 + AluSx SINE Alu 1 297 -15 200 211 0 99 chr1 15029026 15029097 -267164567 + MIR3 SINE MIR 138 201 -7 352 303 69 35 chr1 15029332 15029477 -267164187 - MIR3 SINE MIR -29 179 30 1400 129 14 0 chr1 15030421 15030630 -267163034 - Tigger1 DNA MER2_type 0 2418 2207 601 175 36 90 chr1 15030624 15030790 -267162874 - Tigger1 DNA MER2_type -2261 157 1 * 299 291 0 36 chr1 15030790 15030900 -267162764 + MIR SINE MIR 153 258 -4 363 387 7 0 chr1 15031469 15031606 -267162058 + MIR3 SINE MIR 22 159 -49 514 319 100 26 chr1 15031738 15031967 -267161697 - MIR SINE MIR -7 255 10 1633 172 7 14 chr1 15032433 15032729 -267160935 - AluJo SINE Alu -17 295 2 2447 169 11 26 chr1 15032748 15033214 -267160450 - L1MB5 LINE L1 -8 6166 5708 377 299 29 15 chr1 15033498 15033635 -267160029 + MIR SINE MIR 124 262 0 585 271 28 39 chr1 15033889 15034070 -267159594 + MIR SINE MIR 6 184 -78 2403 90 64 6 chr1 15034806 15035150 -267158514 + THE1B LTR MaLR 1 364 0 2300 57 3 3 chr1 15035639 15035936 -267157728 + AluY SINE Alu 1 297 -14 298 353 9 17 chr1 15036039 15036155 -267157509 + MIR SINE MIR 17 131 -131 4255 126 13 25 chr1 15036171 15036863 -267156801 + L1PA15 LINE L1 5473 6156 -9 1995 228 42 26 chr1 15036868 15037371 -267156293 - L1M4 LINE L1 -3094 3052 2535 2258 94 0 0 chr1 15037371 15037679 -267155985 + AluY SINE Alu 1 308 -3 1995 228 42 26 chr1 15037679 15037821 -267155843 - L1M4 LINE L1 -3611 2535 2397 256 213 0 0 chr1 15037912 15037959 -267155705 - L2 LINE L2 0 3272 3226 256 260 60 60 chr1 15039644 15039744 -267153920 - MIR SINE MIR -78 184 85 822 252 211 24 chr1 15040224 15040739 -267152925 - L2 LINE L2 0 3313 2689 567 297 27 14 chr1 15040752 15040900 -267152764 + L2 LINE L2 3117 3266 -6 189 0 0 0 chr1 15041209 15041230 -267152434 + (TC)n Simple_repeat Simple_repeat 1 21 0 228 308 39 26 chr1 15041882 15041960 -267151704 - MIR SINE MIR -59 203 125 2166 114 0 0 chr1 15042070 15042377 -267151287 - AluSx SINE Alu -5 307 1 438 252 17 35 chr1 15043193 15043308 -267150356 + MER63A DNA MER1_type 63 175 -35 852 136 0 0 chr1 15043635 15043753 -267149911 + FLAM_C SINE Alu 1 118 -15 31 0 0 0 chr1 15043755 15043786 -267149878 + AT_rich Low_complexity Low_complexity 1 31 0 723 284 16 6 chr1 15043949 15044132 -267149532 + MIR SINE MIR 1 185 -77 21 0 0 0 chr1 15045800 15045821 -267147843 + AT_rich Low_complexity Low_complexity 1 21 0 2247 117 0 0 chr1 15046147 15046447 -267147217 - AluSx SINE Alu -12 300 1 1837 164 115 8 chr1 15046520 15046893 -267146771 + MLT1D LTR MaLR 93 505 0 22 0 0 0 chr1 15047115 15047137 -267146527 + AT_rich Low_complexity Low_complexity 1 22 0 282 324 57 57 chr1 15048162 15048372 -267145292 + MIR SINE MIR 42 251 -11 494 218 32 24 chr1 15048512 15048636 -267145028 - MER20 DNA MER1_type -48 171 47 385 186 168 26 chr1 15049000 15049113 -267144551 + MER20 DNA MER1_type 91 219 0 551 262 39 58 chr1 15049318 15049524 -267144140 + MIR3 SINE MIR 1 202 -6 293 339 40 16 chr1 15049760 15049884 -267143780 - MIR SINE MIR -20 242 116 699 248 36 82 chr1 15050520 15050779 -267142885 - MIR SINE MIR -14 248 12 297 223 15 115 chr1 15050800 15050930 -267142734 - MER5B DNA MER1_type -61 117 1 1930 208 49 22 chr1 15051033 15051485 -267142179 - MLT1C LTR MaLR -2 465 2 2479 91 0 0 chr1 15051521 15051829 -267141835 + AluSx SINE Alu 5 312 0 320 294 137 71 chr1 15051969 15052363 -267141301 + L2 LINE L2 2550 2969 -345 271 249 18 121 chr1 15053917 15054116 -267139548 + L2 LINE L2 2884 3064 -208 485 265 269 12 chr1 15054150 15054407 -267139257 - MLT1K LTR MaLR -162 426 104 422 301 65 54 chr1 15054573 15054959 -267138705 - MLT1J LTR MaLR -5 506 117 2593 228 48 44 chr1 15054996 15055348 -267138316 + L1ME1 LINE L1 5091 5440 -726 2231 88 0 3 chr1 15055348 15055655 -267138009 + AluY SINE Alu 1 306 0 2593 228 48 44 chr1 15055655 15055680 -267137984 + L1ME1 LINE L1 5440 5463 -703 2202 119 58 0 chr1 15055680 15056059 -267137605 + L1MA5A LINE L1 5897 6297 0 2593 228 48 44 chr1 15056059 15056393 -267137271 + L1ME1 LINE L1 5463 5794 -372 7142 166 46 19 chr1 15056393 15057233 -267136431 - L1PA14 LINE L1 -1 6160 5344 2468 85 0 3 chr1 15057233 15057539 -267136125 - AluSq SINE Alu -5 308 4 7142 166 46 19 chr1 15057539 15057582 -267136082 - L1PA14 LINE L1 -817 5344 5304 2525 78 0 0 chr1 15057582 15057891 -267135773 - AluY SINE Alu -2 309 1 7142 166 46 19 chr1 15057891 15059150 -267134514 - L1PA14 LINE L1 -857 5304 3980 2593 228 48 44 chr1 15059150 15059478 -267134186 + L1ME1 LINE L1 5794 6140 -26 927 179 18 12 chr1 15059495 15059663 -267134001 + AluJb SINE Alu 137 305 -7 1047 200 28 9 chr1 15059770 15059985 -267133679 - MER20 DNA MER1_type 0 219 1 290 303 34 0 chr1 15060871 15060990 -267132674 - Charlie8 DNA MER1_type -2211 206 84 386 302 75 42 chr1 15061322 15061534 -267132130 + L1ME4a LINE L1 5846 6064 -57 603 243 21 0 chr1 15062536 15062680 -267130984 - MIR SINE MIR -96 166 20 183 345 36 12 chr1 15063167 15063251 -267130413 - MIR SINE MIR -35 227 142 198 0 0 0 chr1 15063263 15063285 -267130379 + (T)n Simple_repeat Simple_repeat 1 22 0 405 200 0 0 chr1 15063285 15063360 -267130304 - MIR SINE MIR -122 140 66 1671 158 54 24 chr1 15063503 15063800 -267129864 + AluJo SINE Alu 1 306 -6 432 181 0 0 chr1 15065669 15065752 -267127912 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 897 181 0 0 chr1 15065784 15065961 -267127703 + (CCCA)n Simple_repeat Simple_repeat 3 179 0 237 108 0 0 chr1 15065965 15066002 -267127662 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 605 221 32 13 chr1 15066045 15066199 -267127465 + MER20 DNA MER1_type 2 158 -61 180 286 63 0 chr1 15066249 15066312 -267127352 - L2 LINE L2 -82 3231 3165 699 236 50 105 chr1 15066537 15066898 -267126766 - MER102b DNA MER1_type 0 341 1 310 263 38 0 chr1 15066898 15066978 -267126686 + MIR SINE MIR 175 257 -5 856 169 5 82 chr1 15067063 15067234 -267126430 - MER20 DNA MER1_type 0 219 63 2238 121 0 3 chr1 15067234 15067539 -267126125 + AluSq SINE Alu 1 304 -9 856 169 5 82 chr1 15067539 15067562 -267126102 - MER20 DNA MER1_type -156 63 40 638 216 126 6 chr1 15068216 15068383 -267125281 - MER5A DNA MER1_type -1 188 2 2710 149 18 2 chr1 15069024 15069468 -267124196 - LTR32 LTR ERVL -3 468 18 328 294 37 9 chr1 15069495 15069604 -267124060 - MER81 DNA DNA -2 112 1 250 314 121 27 chr1 15069666 15069727 -267123937 - MIR SINE MIR 0 262 208 2294 122 119 10 chr1 15069727 15070112 -267123552 - MSTA LTR MaLR 0 428 2 250 314 121 27 chr1 15070112 15070273 -267123391 - MIR SINE MIR -54 208 19 2518 72 3 3 chr1 15070308 15070613 -267123051 - AluSp SINE Alu -8 305 1 746 193 50 7 chr1 15070614 15070754 -267122910 - MER5A DNA MER1_type -38 151 6 290 252 26 35 chr1 15070930 15071045 -267122619 + L2 LINE L2 3199 3312 -1 195 42 0 0 chr1 15071110 15071134 -267122530 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 263 248 329 13 chr1 15071440 15071589 -267122075 + MIR SINE MIR 67 262 0 331 309 53 7 chr1 15071617 15071762 -267121902 + MIR SINE MIR 105 256 -6 1758 146 39 4 chr1 15072199 15072499 -267121165 + AluSx SINE Alu 13 312 0 236 220 220 0 chr1 15073507 15073598 -267120066 - MIR SINE MIR -3 259 149 379 230 9 9 chr1 15073636 15073749 -267119915 - MER96B DNA MER1_type? -222 195 83 216 0 0 0 chr1 15073772 15073796 -267119868 + (T)n Simple_repeat Simple_repeat 1 24 0 276 242 42 53 chr1 15073798 15073893 -267119771 - MIR SINE MIR -163 99 6 459 309 27 13 chr1 15074266 15074415 -267119249 - MIR SINE MIR -14 248 98 1139 174 5 0 chr1 15074620 15074816 -267118848 - MER58A DNA MER1_type 0 224 28 1853 118 10 80 chr1 15074842 15075156 -267118508 + AluSx SINE Alu 1 292 -20 325 253 22 146 chr1 15075156 15075334 -267118330 + MIR SINE MIR 24 179 -83 384 171 0 0 chr1 15075881 15075963 -267117701 + (TG)n Simple_repeat Simple_repeat 2 83 0 239 300 0 0 chr1 15076033 15076093 -267117571 - MIR SINE MIR -9 253 194 371 266 0 43 chr1 15076107 15076201 -267117463 + L1MC4 LINE L1 6614 6703 -1339 * 373 273 11 0 chr1 15076124 15076212 -267117452 - L1MC4 LINE L1 -1339 6703 6615 1580 178 0 29 chr1 15076212 15076487 -267117177 - AluJo SINE Alu -25 287 21 249 260 77 39 chr1 15076532 15076636 -267117028 - MIR SINE MIR -109 153 46 2464 181 41 39 chr1 15076806 15076852 -267116812 + L1MB2 LINE L1 5422 5466 -705 196 50 0 50 chr1 15076852 15076892 -267116772 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2464 181 41 39 chr1 15076892 15077381 -267116283 + L1MB2 LINE L1 5466 5961 -210 2152 122 0 0 chr1 15077381 15077667 -267115997 + AluSx SINE Alu 1 286 -26 2464 181 41 39 chr1 15077667 15077694 -267115970 + L1MB2 LINE L1 5961 5986 -185 295 258 37 121 chr1 15077748 15077872 -267115792 + MER5B DNA MER1_type 2 106 -72 2520 83 0 6 chr1 15077872 15078185 -267115479 - AluY SINE Alu 0 311 1 295 258 37 121 chr1 15078185 15078250 -267115414 + MER5B DNA MER1_type 106 175 -3 194 297 0 16 chr1 15078858 15078922 -267114742 + MIR SINE MIR 106 168 -94 189 0 0 0 chr1 15079163 15079184 -267114480 + (A)n Simple_repeat Simple_repeat 1 21 0 932 267 75 34 chr1 15079704 15079970 -267113694 - MLT1C LTR MaLR -2 465 172 1988 98 8 0 chr1 15079970 15080226 -267113438 - AluSc SINE Alu -13 296 39 932 267 75 34 chr1 15080226 15080401 -267113263 - MLT1C LTR MaLR -295 172 6 185 281 53 0 chr1 15081629 15081686 -267111978 - MIR SINE MIR -61 147 88 216 308 15 0 chr1 15081788 15081853 -267111811 + CT-rich Low_complexity Low_complexity 2 67 0 680 181 0 15 chr1 15082518 15082651 -267111013 + MER20 DNA MER1_type 89 219 0 1932 169 0 10 chr1 15082692 15083006 -267110658 + AluJo SINE Alu 1 311 -1 250 121 91 0 chr1 15083318 15083384 -267110280 + CT-rich Low_complexity Low_complexity 3 74 0 872 198 10 52 chr1 15083527 15083719 -267109945 - MER5A DNA MER1_type 0 189 6 510 320 61 17 chr1 15083720 15083901 -267109763 - MER5A DNA MER1_type 0 189 1 505 211 0 10 chr1 15083962 15084066 -267109598 - MER5A DNA MER1_type -77 112 10 905 229 57 14 chr1 15084082 15084292 -267109372 + MER20 DNA MER1_type 1 219 0 198 222 19 0 chr1 15084336 15084390 -267109274 - L2 LINE L2 -209 3063 3009 693 286 37 11 chr1 15084422 15084611 -267109053 + L2 LINE L2 3120 3313 0 1205 258 94 41 chr1 15085842 15086330 -267107334 - LTR67 LTR ERVL -41 516 3 242 284 14 0 chr1 15086744 15086818 -267106846 - MIR3 SINE MIR -15 193 119 288 284 53 21 chr1 15087163 15087258 -267106406 + MER5A DNA MER1_type 88 185 -4 435 335 13 25 chr1 15087263 15087421 -267106243 - MIR3 SINE MIR -48 160 5 1348 175 13 9 chr1 15088008 15088236 -267105428 - AluJo SINE Alu -1 311 83 281 313 47 42 chr1 15089562 15089753 -267103911 + MIR SINE MIR 16 202 -60 2943 132 0 0 chr1 15089755 15090202 -267103462 + L1MB7 LINE L1 5721 6167 -17 185 308 0 0 chr1 15090299 15090351 -267103313 - L2 LINE L2 -19 3294 3243 220 338 19 45 chr1 15091239 15091294 -267102370 + MIR3 SINE MIR 7 62 -146 1883 201 74 83 chr1 15091294 15091851 -267101813 + MLT2B3 LTR ERVL 3 554 0 220 338 19 45 chr1 15091851 15091949 -267101715 + MIR3 SINE MIR 62 156 -52 256 312 0 0 chr1 15091969 15092046 -267101618 - L2 LINE L2 -5 3267 3191 262 308 30 38 chr1 15092096 15092229 -267101435 - L2 LINE L2 -62 3251 3120 2351 211 30 29 chr1 15092306 15092864 -267100800 - MER74B LTR ERVL -5 617 59 720 198 21 64 chr1 15092865 15093052 -267100612 - MIR SINE MIR -50 212 34 314 239 111 39 chr1 15093233 15093357 -267100307 + MER5A DNA MER1_type 19 161 -28 1299 207 3 50 chr1 15093370 15093689 -267099975 - L1ME2 LINE L1 -1 6163 5860 * 2283 186 50 17 chr1 15093684 15094044 -267099620 - L1PA8 LINE L1 -4 6168 5784 2357 172 16 12 chr1 15094044 15094468 -267099196 - MSTB LTR MaLR 0 426 1 2283 186 50 17 chr1 15094468 15094630 -267099034 - L1PA8 LINE L1 -388 5784 5629 2044 142 38 57 chr1 15094774 15094824 -267098840 - L1MB3 LINE L1 0 6183 6134 522 46 0 0 chr1 15094824 15094889 -267098775 + (TA)n Simple_repeat Simple_repeat 1 65 0 2508 37 16 47 chr1 15094895 15095216 -267098448 - AluY SINE Alu 0 311 1 2044 142 38 57 chr1 15095216 15095517 -267098147 - L1MB3 LINE L1 -54 6129 5832 1957 159 7 7 chr1 15095517 15095818 -267097846 - AluJb SINE Alu -11 301 1 2044 142 38 57 chr1 15095818 15095880 -267097784 - L1MB3 LINE L1 -351 5832 5770 248 300 130 10 chr1 15096852 15096952 -267096712 + L2 LINE L2 3145 3256 -16 254 289 22 89 chr1 15097018 15097153 -267096511 + L2 LINE L2 3141 3266 -6 349 250 42 21 chr1 15097540 15097636 -267096028 + MIR SINE MIR 52 149 -113 2431 186 23 45 chr1 15097673 15098189 -267095475 - MLT1D LTR MaLR 0 505 1 1762 254 58 4 chr1 15098282 15098746 -267094918 - LTR16C LTR ERVL -2 489 1 486 245 51 70 chr1 15099110 15099294 -267094370 - MIR SINE MIR -63 145 2 2312 91 14 0 chr1 15099297 15099593 -267094071 - AluSc SINE Alu -9 300 1 211 258 97 0 chr1 15100467 15100529 -267093135 - L2 LINE L2 -5 3308 3241 321 228 228 8 chr1 15101455 15101582 -267092082 + MIR3 SINE MIR 27 181 -27 188 283 0 33 chr1 15101579 15101639 -267092025 + L2 LINE L2 3173 3230 -42 * 2020 124 0 3 chr1 15102142 15102471 -267091193 + AluSx SINE Alu 1 328 0 219 262 0 16 chr1 15104558 15104619 -267089045 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 2124 130 0 16 chr1 15104714 15105022 -267088642 - AluSx SINE Alu -9 303 1 22 0 0 0 chr1 15105277 15105299 -267088365 + AT_rich Low_complexity Low_complexity 1 22 0 842 77 0 8 chr1 15105655 15105772 -267087892 - Tigger2 DNA MER2_type -2019 699 584 2051 140 7 3 chr1 15105880 15106173 -267087491 + AluSx SINE Alu 1 294 -18 222 37 0 0 chr1 15107695 15107722 -267085942 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 795 293 0 15 chr1 15107852 15108057 -267085607 + MIR SINE MIR 15 216 -46 2367 96 7 0 chr1 15108741 15109034 -267084630 - AluSg SINE Alu -15 295 1 270 326 65 69 chr1 15109387 15109632 -267084032 - L2 LINE L2 -1 3271 3028 1147 166 11 0 chr1 15109856 15110043 -267083621 - MER5A DNA MER1_type 0 189 1 1589 147 0 114 chr1 15110239 15110580 -267083084 + AluJo SINE Alu 1 302 0 740 302 65 44 chr1 15112629 15112944 -267080720 - L2 LINE L2 -5 3308 2978 762 244 38 38 chr1 15112944 15113153 -267080511 + MER63A DNA MER1_type 1 209 -1 740 302 65 44 chr1 15113153 15113358 -267080306 - L2 LINE L2 -335 2978 2779 1956 81 4 0 chr1 15113480 15113715 -267079949 + AluSg SINE Alu 59 294 -16 1753 157 3 49 chr1 15114355 15114661 -267079003 - AluJo SINE Alu -20 292 1 1915 146 13 26 chr1 15114741 15115043 -267078621 + AluJb SINE Alu 1 298 -14 360 0 0 0 chr1 15115557 15115597 -267078067 + (TG)n Simple_repeat Simple_repeat 1 40 0 445 275 99 33 chr1 15116171 15116353 -267077311 - MIR SINE MIR -24 238 45 2655 103 11 16 chr1 15116479 15116856 -267076808 + THE1C LTR MaLR 1 375 0 1487 173 11 35 chr1 15116856 15117140 -267076524 + AluJb SINE Alu 31 307 -5 362 272 82 38 chr1 15117986 15118144 -267075520 + LTR33 LTR ERVL 128 292 -229 1321 182 68 46 chr1 15118240 15118533 -267075131 - MLT1B LTR MaLR -19 371 112 5112 107 13 18 chr1 15118533 15119092 -267074572 + L1MA5A LINE L1 5516 6071 -226 3476 122 11 39 chr1 15119092 15119634 -267074030 + MER1A DNA MER1_type 1 527 0 5112 107 13 18 chr1 15119634 15119859 -267073805 + L1MA5A LINE L1 6071 6296 -1 1321 182 68 46 chr1 15119859 15119974 -267073690 - MLT1B LTR MaLR -278 112 1 262 75 100 0 chr1 15120008 15120048 -267073616 + LTR33 LTR ERVL 476 519 -2 326 259 52 52 chr1 15121065 15121181 -267072483 - L2 LINE L2 -1 3312 3197 339 309 170 5 chr1 15122292 15122480 -267071184 - MIR SINE MIR -24 238 20 352 277 15 58 chr1 15123092 15123229 -267070435 - MIR SINE MIR -60 148 18 224 338 84 0 chr1 15123298 15123369 -267070295 - L2 LINE L2 -77 3195 3119 946 257 127 40 chr1 15123438 15124128 -267069536 + L2 LINE L2 2535 3303 -10 1792 141 3 34 chr1 15124132 15124423 -267069241 + AluJo SINE Alu 1 282 -30 893 167 0 0 chr1 15124456 15124588 -267069076 + FLAM_A SINE Alu 1 132 -1 857 234 157 71 chr1 15124693 15125184 -267068480 + MLT1F1 LTR MaLR 10 567 0 512 301 127 34 chr1 15125184 15125569 -267068095 - L2 LINE L2 -341 2973 2553 397 281 69 30 chr1 15126361 15126564 -267067100 - MLT1H LTR MaLR -230 319 109 967 203 56 0 chr1 15126691 15126888 -267066776 + MER20 DNA MER1_type 1 208 -11 1559 199 3 52 chr1 15126888 15127214 -267066450 + AluJo SINE Alu 1 310 -2 2073 153 3 6 chr1 15128013 15128326 -267065338 - AluJb SINE Alu 0 312 1 600 132 0 11 chr1 15128326 15128417 -267065247 - AluJo SINE Alu -177 135 46 225 224 0 0 chr1 15129368 15129426 -267064238 + (TG)n Simple_repeat Simple_repeat 1 58 0 253 411 76 13 chr1 15129562 15129866 -267063798 + L2 LINE L2 2420 2742 -572 362 330 76 0 chr1 15130469 15130587 -267063077 - L2 LINE L2 -5 3267 3141 801 214 140 39 chr1 15130590 15130926 -267062738 - MLT1C LTR MaLR -80 387 18 1043 294 101 29 chr1 15132498 15132787 -267060877 - L2 LINE L2 -10 3303 2968 2285 125 0 0 chr1 15132787 15133090 -267060574 + AluSx SINE Alu 1 303 -9 1043 294 101 29 chr1 15133090 15133256 -267060408 - L2 LINE L2 -345 2968 2815 223 348 85 17 chr1 15133256 15133374 -267060290 - MIR SINE MIR -113 149 24 1032 119 0 0 chr1 15133953 15134096 -267059568 - AluSg/x SINE Alu -18 294 152 2795 104 0 5 chr1 15134354 15134729 -267058935 + THE1C LTR MaLR 1 373 -2 324 293 135 90 chr1 15134831 15135102 -267058562 + L1MC4a LINE L1 5530 5820 -1988 2232 120 13 3 chr1 15135102 15135410 -267058254 + AluSx SINE Alu 1 311 -1 324 293 135 90 chr1 15135410 15135472 -267058192 + L1MC4a LINE L1 5820 5878 -1930 299 295 38 60 chr1 15135875 15136058 -267057606 - L1MC5 LINE L1 -32 7929 7751 1861 171 16 16 chr1 15136074 15136383 -267057281 + AluJb SINE Alu 1 309 -3 517 236 0 9 chr1 15137049 15137155 -267056509 - L2 LINE L2 -9 3304 3200 221 317 121 81 chr1 15138391 15138788 -267054876 + L2 LINE L2 2898 3310 -3 * 365 255 170 21 chr1 15138785 15138926 -267054738 - MIR SINE MIR -73 189 28 478 223 160 6 chr1 15138977 15139128 -267054536 - MER5A DNA MER1_type -8 181 4 950 159 77 0 chr1 15139937 15140107 -267053557 + MER5A DNA MER1_type 3 185 -4 334 314 60 5 chr1 15140143 15140260 -267053404 - MIR SINE MIR -87 121 2 2734 134 11 88 chr1 15140556 15140697 -267052967 - MER1A DNA MER1_type -2173 529 379 2273 72 48 0 chr1 15140697 15140988 -267052676 - AluSp SINE Alu 0 313 9 2734 134 11 88 chr1 15140988 15141234 -267052430 - MER1A DNA MER1_type -2323 379 192 2591 70 0 3 chr1 15141234 15141548 -267052116 + AluSq SINE Alu 1 313 0 2734 134 11 88 chr1 15141548 15141695 -267051969 - MER1A DNA MER1_type -2510 192 35 267 275 44 35 chr1 15141749 15141867 -267051797 - MER5B DNA MER1_type -74 104 2 464 270 34 34 chr1 15141973 15142121 -267051543 + MIR SINE MIR 58 205 -57 1042 179 104 21 chr1 15143066 15143306 -267050358 + MER58B DNA MER1_type 81 340 -1 2357 75 0 10 chr1 15143320 15143612 -267050052 - AluSg SINE Alu -21 289 1 606 315 30 5 chr1 15143679 15143879 -267049785 - MIR SINE MIR -55 207 3 246 266 78 0 chr1 15144035 15144099 -267049565 - MIR3 SINE MIR -126 82 14 331 282 69 52 chr1 15144768 15144942 -267048722 - MIR SINE MIR -39 223 47 291 316 86 38 chr1 15144967 15145176 -267048488 + MIR SINE MIR 21 239 -23 2604 192 20 53 chr1 15145189 15145587 -267048077 + MER119 DNA MER1_type 1 374 -209 1967 177 0 0 chr1 15145587 15145897 -267047767 + AluSx SINE Alu 1 310 -2 2604 192 20 53 chr1 15145897 15146098 -267047566 + MER119 DNA MER1_type 374 580 -3 207 214 24 0 chr1 15147380 15147420 -267046244 + MIR SINE MIR 124 164 -98 471 189 112 97 chr1 15147420 15147527 -267046137 - MER5A DNA MER1_type 0 189 76 2274 92 19 29 chr1 15147527 15147841 -267045823 - AluSp SINE Alu 0 313 3 471 189 112 97 chr1 15147841 15147916 -267045748 - MER5A DNA MER1_type -113 76 4 2502 47 0 3 chr1 15148290 15148590 -267045074 - AluY SINE Alu -12 299 1 404 260 94 83 chr1 15149386 15149485 -267044179 - MER5A DNA MER1_type -6 183 87 414 0 0 0 chr1 15149485 15149531 -267044133 + (TG)n Simple_repeat Simple_repeat 2 47 0 2199 104 0 39 chr1 15149534 15149841 -267043823 - AluSq SINE Alu -18 295 1 404 260 94 83 chr1 15149841 15149918 -267043746 - MER5A DNA MER1_type -103 86 1 216 0 0 0 chr1 15150073 15150097 -267043567 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 770 272 137 40 chr1 15150097 15150527 -267043137 - L2 LINE L2 -13 3300 2829 1335 248 81 13 chr1 15150735 15151292 -267042372 - MLT1E3 LTR MaLR 0 624 5 507 268 49 12 chr1 15151951 15152115 -267041549 - MIR SINE MIR -47 215 46 1769 184 3 20 chr1 15152121 15152426 -267041238 + AluJo SINE Alu 1 300 -12 253 262 117 29 chr1 15154436 15154539 -267039125 + L2 LINE L2 3179 3290 -23 629 187 8 32 chr1 15155380 15155503 -267038161 + L2 LINE L2 3181 3300 -13 289 286 50 76 chr1 15155510 15155629 -267038035 + L2 LINE L2 3188 3303 -10 181 273 23 0 chr1 15155620 15155664 -267038000 - L2 LINE L2 -19 3294 3250 * 195 290 29 14 chr1 15155990 15156059 -267037605 - L2 LINE L2 -9 3263 3194 2382 79 7 0 chr1 15156383 15156674 -267036990 + AluSx SINE Alu 4 296 -16 591 259 37 31 chr1 15157448 15157610 -267036054 - MIR SINE MIR -24 238 76 206 118 0 0 chr1 15157625 15157659 -267036005 + (T)n Simple_repeat Simple_repeat 1 34 0 1816 145 27 27 chr1 15157677 15157973 -267035691 + AluJo SINE Alu 1 296 -16 541 267 40 15 chr1 15157974 15158176 -267035488 - L1ME3A LINE L1 -8 6162 5956 219 139 0 0 chr1 15158479 15158515 -267035149 + (A)n Simple_repeat Simple_repeat 1 36 0 192 231 0 0 chr1 15159768 15159807 -267033857 - L2 LINE L2 -254 3059 3021 3290 164 75 37 chr1 15160071 15160447 -267033217 - L1MB4 LINE L1 -9 6171 5811 219 88 0 0 chr1 15160447 15160481 -267033183 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 1865 176 0 10 chr1 15160486 15160810 -267032854 - AluSq SINE Alu 0 313 1 3290 164 75 37 chr1 15160810 15161130 -267032534 - L1MB4 LINE L1 -372 5808 5442 189 175 200 38 chr1 15161602 15161682 -267031982 + MIR SINE MIR 26 118 -90 591 261 7 7 chr1 15161714 15161852 -267031812 + MIR SINE MIR 107 244 -18 391 336 27 7 chr1 15161888 15162034 -267031630 + MIR SINE MIR 110 258 -4 368 306 37 0 chr1 15162205 15162313 -267031351 + MIR SINE MIR 19 130 -78 537 281 67 11 chr1 15162330 15162508 -267031156 - MER117 DNA MER1_type 0 197 10 341 188 23 148 chr1 15163031 15163159 -267030505 + MIR SINE MIR 87 198 -64 809 215 78 49 chr1 15163159 15163443 -267030221 + L1MD2 LINE L1 6068 6359 0 305 268 18 89 chr1 15164393 15164561 -267029103 - L1ME4a LINE L1 -86 6035 5880 729 266 42 68 chr1 15164638 15164901 -267028763 - MIR SINE MIR -5 257 2 302 318 20 27 chr1 15164945 15165093 -267028571 - MER117 DNA MER1_type -2 195 49 2583 140 80 2 chr1 15165109 15165510 -267028154 - MSTB1 LTR MaLR 0 432 1 273 265 44 0 chr1 15165550 15165618 -267028046 - MIR3 SINE MIR -47 161 91 1772 183 27 43 chr1 15165631 15166002 -267027662 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr1 15166429 15166464 -267027200 + AT_rich Low_complexity Low_complexity 1 35 0 404 125 0 0 chr1 15166464 15166528 -267027136 - L1PB1 LINE L1 -2 6149 6086 764 160 0 8 chr1 15166675 15166794 -267026870 + FLAM_C SINE Alu 2 119 -24 197 32 0 32 chr1 15166808 15166839 -267026825 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 554 188 27 0 chr1 15167049 15167161 -267026503 - MLT1A1 LTR MaLR -66 299 185 2101 129 0 10 chr1 15167581 15167876 -267025788 + AluSx SINE Alu 1 292 -20 453 267 34 75 chr1 15167990 15168141 -267025523 + MIR SINE MIR 6 149 -63 1825 166 0 35 chr1 15168190 15168503 -267025161 + AluJb SINE Alu 1 302 -10 688 272 25 0 chr1 15170622 15170822 -267022842 + MIR SINE MIR 15 222 -40 282 29 0 0 chr1 15171308 15171343 -267022321 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 336 161 0 0 chr1 15171354 15171416 -267022248 + CT-rich Low_complexity Low_complexity 3 64 0 1400 199 52 4 chr1 15171416 15171563 -267022101 - AluJo SINE Alu -32 280 142 189 0 0 0 chr1 15171563 15171584 -267022080 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1400 199 52 4 chr1 15171584 15171703 -267021961 - AluJo SINE Alu -170 142 1 884 138 0 8 chr1 15171705 15171835 -267021829 - FLAM_C SINE Alu -6 137 9 266 266 13 13 chr1 15172137 15172216 -267021448 + GA-rich Low_complexity Low_complexity 2 80 0 219 264 181 77 chr1 15172923 15173078 -267020586 + MIR3 SINE MIR 15 185 -23 393 231 68 105 chr1 15173189 15173513 -267020151 + LTR16A1 LTR ERVL 146 457 0 205 310 14 0 chr1 15173554 15173625 -267020039 - MIR SINE MIR -7 255 184 369 265 109 14 chr1 15173755 15173902 -267019762 + L2 LINE L2 2618 2778 -536 955 152 0 0 chr1 15173902 15174034 -267019630 + FLAM_C SINE Alu 1 132 -11 566 275 94 79 chr1 15174035 15174053 -267019611 + L2 LINE L2 2776 2792 -480 1161 215 0 5 chr1 15174053 15174276 -267019388 - MER58A DNA MER1_type -2 222 1 566 275 94 79 chr1 15174276 15174757 -267018907 + L2 LINE L2 2792 3269 -3 2560 71 0 0 chr1 15175674 15175983 -267017681 + AluY SINE Alu 1 309 -2 2218 126 3 0 chr1 15176970 15177279 -267016385 - AluSx SINE Alu -2 310 1 619 239 52 143 chr1 15177439 15177866 -267015798 + L2 LINE L2 2926 3313 0 431 335 85 16 chr1 15178034 15178222 -267015442 - MIR SINE MIR -14 248 48 1235 192 14 0 chr1 15178310 15178524 -267015140 - MER20 DNA MER1_type -2 217 1 878 267 157 5 chr1 15178728 15179110 -267014554 - LTR16B LTR ERVL 0 464 25 690 288 43 23 chr1 15179210 15179509 -267014155 - LTR16C LTR ERVL 0 491 187 269 302 135 0 chr1 15179829 15179925 -267013739 - L2 LINE L2 -17 3255 3147 280 362 46 7 chr1 15179984 15180136 -267013528 + MIR SINE MIR 105 262 0 252 286 104 52 chr1 15181516 15181670 -267011994 - MIR SINE MIR 0 262 101 434 289 142 26 chr1 15181936 15182168 -267011496 - MER102a DNA MER1_type -11 319 61 2273 101 3 0 chr1 15182588 15182884 -267010780 - AluSq SINE Alu -16 297 1 847 304 140 29 chr1 15182965 15183748 -267009916 - L2 LINE L2 -1 3271 2394 2298 98 7 3 chr1 15184773 15185080 -267008584 + AluSx SINE Alu 1 308 -4 1996 129 0 7 chr1 15185430 15185710 -267007954 + AluJo SINE Alu 1 278 -34 293 311 92 0 chr1 15187444 15187563 -267006101 + MIR SINE MIR 56 185 -77 1971 142 0 44 chr1 15187699 15188015 -267005649 - AluJo SINE Alu -10 302 1 254 266 43 21 chr1 15188190 15188284 -267005380 - L2 LINE L2 -76 3196 3101 250 257 48 38 chr1 15188332 15188437 -267005227 - MIR SINE MIR -51 211 106 308 292 86 57 chr1 15188525 15188734 -267004930 - MIR SINE MIR -14 248 34 2411 89 20 0 chr1 15189230 15189532 -267004132 - AluSx SINE Alu -2 310 3 288 301 36 0 chr1 15189794 15189877 -267003787 - MIR SINE MIR -12 250 165 1583 181 26 42 chr1 15189877 15190186 -267003478 + AluJo SINE Alu 1 304 -8 2103 65 47 33 chr1 15190214 15190526 -267003138 - AluY SINE Alu 0 316 1 200 296 185 22 chr1 15190527 15190662 -267003002 - MIR SINE MIR -96 166 10 340 296 126 13 chr1 15190675 15190932 -267002732 + L2 LINE L2 2740 3016 -297 3043 108 7 0 chr1 15190967 15191401 -267002263 - MER41B LTR ERV1 -180 455 19 1434 187 86 52 chr1 15191400 15191807 -267001857 - MER72 LTR ERV1 -269 402 1 * 620 251 146 55 chr1 15191966 15192481 -267001183 - MLT1H1 LTR MaLR -16 539 3 318 239 119 18 chr1 15193190 15193299 -267000365 - MIR SINE MIR 0 262 143 305 297 210 31 chr1 15193370 15193660 -267000004 + L2 LINE L2 2910 3251 -62 581 271 7 7 chr1 15193692 15193843 -266999821 + MIR SINE MIR 64 214 -48 2575 62 0 0 chr1 15194271 15194577 -266999087 + AluY SINE Alu 1 306 -5 478 79 124 56 chr1 15194921 15195010 -266998654 + AluJ/FLAM SINE Alu 2 96 -216 496 265 146 11 chr1 15195165 15195350 -266998314 + MIR SINE MIR 53 262 0 2325 118 0 3 chr1 15195495 15195808 -266997856 + AluSx SINE Alu 1 312 0 363 310 127 26 chr1 15196723 15197139 -266996525 - L2 LINE L2 -3 3269 2812 1403 245 15 18 chr1 15197213 15197609 -266996055 - MLT2C1 LTR ERVL 0 397 3 2116 134 0 0 chr1 15197707 15197997 -266995667 + AluJb SINE Alu 1 290 -22 267 246 14 0 chr1 15198329 15198398 -266995266 - MLT1K LTR MaLR -10 578 509 519 250 0 0 chr1 15198862 15198970 -266994694 + MIR SINE MIR 84 191 -71 598 304 68 30 chr1 15199101 15199338 -266994326 + MIR SINE MIR 16 261 -1 206 263 137 21 chr1 15200317 15200412 -266993252 + MIR SINE MIR 1 106 -156 650 275 24 34 chr1 15200466 15200673 -266992991 - MIR SINE MIR -50 212 8 466 272 105 31 chr1 15200647 15200838 -266992826 + MIR SINE MIR 56 260 -2 * 860 191 35 6 chr1 15201241 15201414 -266992250 - MER45A DNA AcHobo 0 178 1 324 0 0 0 chr1 15202991 15203027 -266990637 + (A)n Simple_repeat Simple_repeat 1 36 0 217 167 185 0 chr1 15203027 15203081 -266990583 + L2 LINE L2 3204 3267 -5 2326 106 3 31 chr1 15203220 15203541 -266990123 - AluSp SINE Alu 0 313 2 777 103 8 0 chr1 15203670 15203796 -266989868 - L1MB7 LINE L1 -27 6157 6031 1702 170 11 0 chr1 15203951 15204221 -266989443 - AluSx SINE Alu -39 273 1 360 297 50 0 chr1 15205393 15205494 -266988170 - L2 LINE L2 0 3313 3208 543 174 18 0 chr1 15205536 15205645 -266988019 + L1MB5 LINE L1 5721 5831 -343 226 282 106 85 chr1 15205728 15205916 -266987748 - L2 LINE L2 -182 3090 2899 2422 98 0 0 chr1 15205926 15206222 -266987442 + AluSc SINE Alu 1 296 -13 281 245 21 53 chr1 15206377 15206471 -266987193 - L2 LINE L2 -654 2660 2570 845 271 31 31 chr1 15206632 15206887 -266986777 + MIR SINE MIR 8 262 0 189 292 0 56 chr1 15207663 15207711 -266985953 + MIR SINE MIR 103 147 -115 454 200 159 82 chr1 15207711 15207906 -266985758 + MER63A DNA MER1_type 1 210 0 189 292 0 56 chr1 15207906 15207929 -266985735 + MIR SINE MIR 147 170 -92 2315 145 30 29 chr1 15207938 15208492 -266985172 + MLT2A2 LTR ERVL 1 554 0 460 246 190 33 chr1 15208936 15209241 -266984423 + L2 LINE L2 2837 3189 -124 259 298 60 0 chr1 15209654 15209738 -266983926 + L2 LINE L2 3196 3284 -29 2432 93 0 0 chr1 15210281 15210591 -266983073 - AluSq SINE Alu -3 310 1 630 351 52 4 chr1 15210902 15211133 -266982531 + MIR SINE MIR 21 262 0 692 270 51 6 chr1 15211152 15211373 -266982291 - MIR SINE MIR -24 238 8 2488 76 0 22 chr1 15211647 15211964 -266981700 - AluY SINE Alu -1 310 1 2029 132 30 10 chr1 15211979 15212158 -266981506 - AluJb SINE Alu 0 312 123 213 39 0 0 chr1 15212158 15212184 -266981480 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2029 132 30 10 chr1 15212184 15212308 -266981356 - AluJb SINE Alu -189 123 3 335 179 0 15 chr1 15212358 15212425 -266981239 + MLT1I LTR MaLR 335 400 -9 2695 171 20 22 chr1 15213436 15213650 -266980014 + L1MB7 LINE L1 5615 5828 -356 1974 156 0 10 chr1 15213650 15213945 -266979719 + AluJb SINE Alu 2 293 -19 2695 171 20 22 chr1 15213945 15214285 -266979379 + L1MB7 LINE L1 5828 6168 -16 2322 93 3 3 chr1 15214903 15215214 -266978450 - AluY SINE Alu 0 311 1 2153 130 7 3 chr1 15215354 15215654 -266978010 + AluSx SINE Alu 1 301 -11 757 243 10 20 chr1 15215656 15215858 -266977806 + MER20 DNA MER1_type 17 216 -3 416 314 108 5 chr1 15216337 15216531 -266977133 - MIR SINE MIR -1 261 48 228 300 8 46 chr1 15217421 15217551 -266976113 - LTR67 LTR ERVL -9 548 424 21 0 0 0 chr1 15218190 15218211 -266975453 + AT_rich Low_complexity Low_complexity 1 21 0 311 309 9 36 chr1 15218219 15218329 -266975335 + MIR SINE MIR 82 188 -74 628 291 133 65 chr1 15218333 15218687 -266974977 - MLT1J LTR MaLR -1 452 72 2122 98 3 11 chr1 15218707 15219037 -266974627 + AluSx SINE Alu 1 328 0 190 176 29 0 chr1 15220034 15220068 -266973596 - MIR SINE MIR -189 73 39 359 268 50 42 chr1 15220513 15220663 -266973001 + LTR67 LTR ERVL 380 514 -9 1834 166 10 10 chr1 15220723 15221013 -266972651 + AluJb SINE Alu 7 296 -16 2256 119 0 6 chr1 15221517 15221828 -266971836 - AluSx SINE Alu -3 309 1 929 272 79 63 chr1 15221938 15222379 -266971285 - MLT1L LTR MaLR 0 615 168 688 164 45 79 chr1 15223166 15223343 -266970321 - MER20 DNA MER1_type 0 219 49 520 278 73 48 chr1 15223451 15223724 -266969940 + L2 LINE L2 3034 3313 0 306 270 120 10 chr1 15223833 15223933 -266969731 - MIR SINE MIR -122 140 30 575 218 55 12 chr1 15224874 15225039 -266968625 + MER104 DNA MER2_type 5 176 -4 270 321 36 18 chr1 15225042 15225154 -266968510 - MIR SINE MIR -105 157 44 454 315 45 6 chr1 15225421 15225599 -266968065 - MER91A DNA MER1_type -10 186 2 1841 189 3 3 chr1 15225746 15226042 -266967622 - AluJo SINE Alu -14 298 3 196 298 53 53 chr1 15226269 15226383 -266967281 + MIR SINE MIR 20 133 -129 1519 253 102 16 chr1 15226428 15226871 -266966793 + MLT1G1 LTR MaLR 73 553 -42 251 396 9 0 chr1 15227033 15227139 -266966525 + MIR SINE MIR 141 247 -15 2020 122 37 0 chr1 15227449 15227744 -266965920 - AluSg SINE Alu -4 306 1 252 356 19 10 chr1 15228127 15228231 -266965433 + MIR SINE MIR 141 245 -17 1403 255 40 24 chr1 15229409 15229829 -266963835 - MLT1E LTR MaLR -2 591 165 302 294 0 0 chr1 15229836 15229904 -266963760 + L1MC4 LINE L1 6621 6688 -1354 327 168 39 39 chr1 15229905 15230084 -266963580 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 279 217 56 0 chr1 15230085 15230162 -266963502 - MLT1E LTR MaLR -499 94 6 314 303 89 0 chr1 15230166 15230329 -266963335 - MIR SINE MIR -66 142 2 332 293 19 9 chr1 15230473 15230579 -266963085 + L2 LINE L2 3195 3301 -12 181 167 0 0 chr1 15230576 15230606 -266963058 - L2 LINE L2 0 3313 3284 * 355 250 12 0 chr1 15230738 15230818 -266962846 + L2 LINE L2 3219 3299 -14 666 292 83 52 chr1 15231517 15232003 -266961661 - LTR33 LTR ERVL 0 521 17 2210 120 0 0 chr1 15232003 15232295 -266961369 + AluSq SINE Alu 1 292 -21 666 292 83 52 chr1 15232295 15232312 -266961352 - LTR33 LTR ERVL -504 17 2 1845 219 25 8 chr1 15232535 15232937 -266960727 + MLT2C2 LTR ERVL 1 409 -55 2243 116 3 7 chr1 15232937 15233239 -266960425 - AluSx SINE Alu -11 301 1 495 253 37 47 chr1 15233292 15233482 -266960182 - MER5A DNA MER1_type -1 188 1 2064 137 3 39 chr1 15234371 15234481 -266959183 + MLT1B LTR MaLR 1 113 -277 2034 108 14 11 chr1 15234481 15234759 -266958905 + AluSx SINE Alu 20 298 -14 2064 137 3 39 chr1 15234759 15235012 -266958652 + MLT1B LTR MaLR 113 351 -39 194 260 10 125 chr1 15235012 15235108 -266958556 - MIR SINE MIR -57 151 89 583 231 46 1 chr1 15236706 15236865 -266956799 + MER20B DNA MER1_type 33 202 -17 2463 87 0 0 chr1 15237062 15237362 -266956302 + AluSx SINE Alu 1 300 -12 234 62 0 0 chr1 15237917 15237949 -266955715 + (CAT)n Simple_repeat Simple_repeat 2 33 0 842 246 32 14 chr1 15238728 15238948 -266954716 - MIR SINE MIR -36 226 3 218 314 194 16 chr1 15239080 15239204 -266954460 + L2 LINE L2 3160 3305 -8 185 292 42 14 chr1 15239231 15239303 -266954361 - MIR SINE MIR -142 120 47 253 354 112 6 chr1 15240106 15240267 -266953397 + MIR SINE MIR 20 197 -65 1706 110 0 11 chr1 15240489 15240752 -266952912 - L1PB1 LINE L1 -1 6150 5891 265 256 23 12 chr1 15241250 15241336 -266952328 - MER117 DNA MER1_type 0 197 111 897 271 180 42 chr1 15241869 15242392 -266951272 - MLT1J LTR MaLR -13 602 8 1176 143 0 0 chr1 15242653 15242814 -266950850 + FRAM SINE Alu 1 160 -16 216 340 69 25 chr1 15242902 15243061 -266950603 - L2 LINE L2 -337 2976 2811 1395 237 65 16 chr1 15243306 15243673 -266949991 - MLT1K LTR MaLR -67 521 137 2152 115 99 10 chr1 15243701 15244093 -266949571 - MSTA LTR MaLR -1 427 1 1067 65 0 0 chr1 15244266 15244390 -266949274 - AluSq/x SINE Alu -188 124 1 255 31 0 0 chr1 15244570 15244602 -266949062 + (CTG)n Simple_repeat Simple_repeat 2 33 0 621 286 96 32 chr1 15245069 15245143 -266948521 - MLT1K LTR MaLR 0 588 520 2292 97 3 7 chr1 15245143 15245442 -266948222 + AluSq SINE Alu 1 298 -15 621 286 96 32 chr1 15245442 15245710 -266947954 - MLT1K LTR MaLR -68 520 224 1306 125 60 19 chr1 15245739 15245955 -266947709 + MER30 DNA MER1_type 2 226 -4 1132 218 30 11 chr1 15245971 15246237 -266947427 + MER58B DNA MER1_type 39 309 -32 33 73 0 0 chr1 15246237 15246305 -266947359 + AT_rich Low_complexity Low_complexity 1 68 0 475 251 64 75 chr1 15246525 15246792 -266946872 - LTR16C LTR ERVL 0 491 228 459 52 0 0 chr1 15247200 15247258 -266946406 + (CA)n Simple_repeat Simple_repeat 1 58 0 2227 129 0 0 chr1 15247264 15247566 -266946098 - AluSx SINE Alu -10 302 1 2594 69 0 0 chr1 15247587 15247891 -266945773 - AluY SINE Alu -7 304 1 242 259 80 36 chr1 15247925 15248037 -266945627 - L2 LINE L2 -10 3303 3187 477 257 74 27 chr1 15248728 15248876 -266944788 - MIR SINE MIR -62 200 46 26 50 0 0 chr1 15250001 15250041 -266943623 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr1 15250321 15250351 -266943313 + AT_rich Low_complexity Low_complexity 1 30 0 403 214 6 187 chr1 15250362 15250441 -266943223 - L1ME3A LINE L1 -263 5903 5811 2256 83 3 3 chr1 15250441 15250729 -266942935 - AluSp SINE Alu -25 288 1 403 214 6 187 chr1 15250729 15250781 -266942883 - L1ME3A LINE L1 -355 5811 5810 1695 148 94 4 chr1 15250781 15250948 -266942716 - AluJo SINE Alu -10 302 99 219 36 0 0 chr1 15250948 15250976 -266942688 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1695 148 94 4 chr1 15250976 15251085 -266942579 - AluJo SINE Alu -213 99 1 403 214 6 187 chr1 15251085 15251142 -266942522 - L1ME3A LINE L1 -356 5810 5744 1155 182 35 117 chr1 15251190 15251559 -266942105 - MLT1A1 LTR MaLR 0 365 27 1935 152 0 3 chr1 15251869 15252152 -266941512 - AluSx SINE Alu -30 282 1 618 291 87 12 chr1 15252426 15252667 -266940997 + MIR SINE MIR 4 262 0 212 173 93 107 chr1 15254033 15254108 -266939556 - L2 LINE L2 -4 3309 3236 235 345 69 0 chr1 15254233 15254320 -266939344 - L2 LINE L2 -324 2989 2897 2465 57 40 3 chr1 15254366 15254666 -266938998 + AluY SINE Alu 1 311 0 456 250 36 0 chr1 15254844 15254956 -266938708 - MER63 DNA MER1_type -279 783 42 930 304 106 17 chr1 15255043 15255506 -266938158 + L2 LINE L2 2810 3313 0 711 265 96 61 chr1 15255987 15256394 -266937270 - HAL1 LINE L1 0 2507 2087 330 246 82 93 chr1 15256496 15256679 -266936985 - L2 LINE L2 -189 3124 2944 320 276 52 99 chr1 15256677 15256869 -266936795 - L2 LINE L2 -188 3084 2902 * 460 221 14 62 chr1 15257489 15257634 -266936030 + MIR SINE MIR 91 228 -34 462 228 9 9 chr1 15258039 15258153 -266935511 + (TGGG)n Simple_repeat Simple_repeat 1 114 0 931 180 8 0 chr1 15258155 15258830 -266934834 + (TGGA)n Simple_repeat Simple_repeat 1 680 0 923 308 89 5 chr1 15258948 15259341 -266934323 - LTR16B LTR ERVL 0 464 39 442 234 93 0 chr1 15259424 15259531 -266934133 - MER103 DNA DNA -49 117 1 207 0 0 0 chr1 15259730 15259753 -266933911 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 207 286 0 76 chr1 15259833 15259952 -266933712 - MIR SINE MIR -24 238 129 354 294 234 11 chr1 15259986 15260170 -266933494 - MIR SINE MIR -13 249 25 583 234 12 70 chr1 15260810 15260933 -266932731 + L2 LINE L2 3153 3265 -48 1974 143 10 7 chr1 15260933 15261233 -266932431 + AluJo SINE Alu 5 305 -7 583 234 12 70 chr1 15261233 15261280 -266932384 + L2 LINE L2 3265 3313 0 204 247 26 13 chr1 15261400 15261477 -266932187 + CT-rich Low_complexity Low_complexity 1 78 0 344 212 143 28 chr1 15261535 15261675 -266931989 + MIR SINE MIR 37 184 -63 217 200 33 11 chr1 15262254 15262315 -266931349 - MIR3 SINE MIR -42 166 103 241 185 15 92 chr1 15262599 15262664 -266931000 - MIR SINE MIR 0 262 203 2383 88 0 7 chr1 15263169 15263464 -266930200 - AluSc SINE Alu -16 293 1 645 231 39 19 chr1 15263639 15263795 -266929869 - MIR SINE MIR -62 200 42 225 303 168 17 chr1 15263832 15263951 -266929713 + L2 LINE L2 3133 3269 -3 251 323 219 10 chr1 15264828 15265029 -266928635 + MIR SINE MIR 17 259 -3 285 357 9 9 chr1 15265208 15265320 -266928344 + MIR SINE MIR 24 135 -127 706 169 137 0 chr1 15266044 15266203 -266927461 + MER5A DNA MER1_type 5 188 -1 260 385 8 8 chr1 15266205 15266322 -266927342 - MIR SINE MIR -122 140 24 205 281 167 10 chr1 15266329 15266425 -266927239 - L2 LINE L2 -2 3311 3201 472 290 103 50 chr1 15266605 15266813 -266926851 - MIR SINE MIR -11 197 19 194 211 0 127 chr1 15266816 15266887 -266926777 - L2 LINE L2 -336 2977 2916 300 185 0 0 chr1 15267390 15267444 -266926220 - MIR SINE MIR -63 145 92 2689 158 31 11 chr1 15267582 15268030 -266925634 - MSTB2 LTR MaLR 0 457 1 259 292 139 0 chr1 15268930 15269046 -266924618 - MIR SINE MIR -33 175 45 246 350 153 6 chr1 15270109 15270266 -266923398 + L3b LINE CR1 1194 1373 -210 480 240 87 47 chr1 15270332 15270473 -266923191 + MIR SINE MIR 74 223 -39 1828 138 29 55 chr1 15270473 15270785 -266922879 + AluJb SINE Alu 1 304 -8 2073 153 74 72 chr1 15271041 15271431 -266922233 - L1MB8 LINE L1 0 6178 5783 2514 90 0 0 chr1 15271431 15271743 -266921921 - AluSx SINE Alu 0 312 1 2073 153 74 72 chr1 15271743 15271884 -266921780 - L1MB8 LINE L1 -395 5783 5644 2449 45 0 17 chr1 15272170 15272459 -266921205 + AluY SINE Alu 16 299 -12 594 278 68 19 chr1 15272491 15272696 -266920968 - MIR SINE MIR -43 219 5 395 83 17 0 chr1 15273339 15273399 -266920265 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2070 132 3 10 chr1 15273428 15273723 -266919941 - AluSx SINE Alu -17 295 3 293 293 54 20 chr1 15273763 15273910 -266919754 - L1M4 LINE L1 -3343 2803 2652 453 79 22 124 chr1 15274277 15274326 -266919338 - MADE1 DNA Mariner 0 80 42 2117 139 0 3 chr1 15274326 15274621 -266919043 + AluSx SINE Alu 1 294 -18 453 79 22 124 chr1 15274621 15274660 -266919004 - MADE1 DNA Mariner -38 42 1 1129 273 94 31 chr1 15274815 15275303 -266918361 + MLT1K LTR MaLR 64 582 -6 314 274 192 27 chr1 15276110 15276256 -266917408 - MIR SINE MIR -58 204 35 2305 90 3 0 chr1 15277513 15277812 -266915852 + AluSg SINE Alu 1 300 -10 491 256 110 52 chr1 15277976 15278167 -266915497 + MIR SINE MIR 18 219 -43 198 275 25 50 chr1 15278287 15278367 -266915297 + L3 LINE CR1 1396 1473 -104 1491 223 95 19 chr1 15278893 15279315 -266914349 + MLT1C LTR MaLR 6 459 -8 294 301 91 67 chr1 15279317 15279646 -266914018 + L2 LINE L2 2888 3224 -48 1863 167 7 0 chr1 15279669 15279963 -266913701 + AluJo SINE Alu 1 296 -16 320 323 21 0 chr1 15280715 15280811 -266912853 + MIR SINE MIR 94 191 -71 182 152 0 22 chr1 15281248 15281294 -266912370 + (CATAG)n Simple_repeat Simple_repeat 5 49 0 263 223 34 40 chr1 15281299 15281474 -266912190 + (CATCG)n Simple_repeat Simple_repeat 5 178 0 450 207 107 25 chr1 15281621 15281742 -266911922 - MIR SINE MIR -119 143 13 1056 150 0 0 chr1 15281921 15282074 -266911590 + FRAM SINE Alu 1 153 -13 610 259 25 68 chr1 15283442 15283558 -266910106 + MIR SINE MIR 20 122 -140 2108 138 7 0 chr1 15283558 15283862 -266909802 - AluSx SINE Alu -4 308 3 610 259 25 68 chr1 15283862 15283981 -266909683 + MIR SINE MIR 122 245 -17 387 0 0 0 chr1 15284873 15284916 -266908748 + (TG)n Simple_repeat Simple_repeat 1 43 0 303 253 25 99 chr1 15284969 15285131 -266908533 - MLT1K LTR MaLR -382 206 57 265 287 59 37 chr1 15285146 15285282 -266908382 - L2 LINE L2 -940 2374 2236 284 275 174 20 chr1 15285370 15285502 -266908162 + MIR SINE MIR 26 185 -77 970 169 106 0 chr1 15285502 15285691 -266907973 + MER3 DNA MER1_type 1 209 0 284 275 174 20 chr1 15285691 15285707 -266907957 + MIR SINE MIR 185 197 -65 960 161 0 0 chr1 15285969 15286202 -266907462 + (TGGA)n Simple_repeat Simple_repeat 1 233 0 1134 117 0 0 chr1 15286238 15286417 -266907247 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2940 246 166 25 chr1 15286425 15287682 -266905982 - L2 LINE L2 0 3313 1862 534 31 0 0 chr1 15287708 15287772 -266905892 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 208 158 26 0 chr1 15288060 15288098 -266905566 + GA-rich Low_complexity Low_complexity 2 40 0 2467 89 3 0 chr1 15288287 15288590 -266905074 + AluSp SINE Alu 1 304 -9 255 61 0 0 chr1 15288718 15288751 -266904913 + (A)n Simple_repeat Simple_repeat 1 33 0 583 238 104 36 chr1 15288844 15289037 -266904627 - MER63A DNA MER1_type -4 206 1 745 235 37 60 chr1 15289754 15290022 -266903642 + MIR SINE MIR 1 262 0 323 191 30 131 chr1 15290163 15290331 -266903333 - MLT1K LTR MaLR 0 588 438 456 269 123 41 chr1 15290548 15290767 -266902897 - MLT1K LTR MaLR -293 295 59 799 255 20 51 chr1 15290804 15291059 -266902605 + MIR SINE MIR 15 261 -1 378 287 7 68 chr1 15291241 15291403 -266902261 + MIR3 SINE MIR 2 153 -66 909 138 88 88 chr1 15291487 15291704 -266901960 - MER20 DNA MER1_type 0 219 3 317 195 146 12 chr1 15291714 15291796 -266901868 + MIR3 SINE MIR 71 163 -45 451 311 17 71 chr1 15292354 15292592 -266901072 + MIR SINE MIR 28 252 -10 343 364 62 10 chr1 15293055 15293250 -266900414 - MIR SINE MIR -2 260 56 488 368 35 0 chr1 15293443 15293644 -266900020 - MIR SINE MIR -34 228 21 1253 221 102 68 chr1 15293657 15294127 -266899537 - MLT1G LTR MaLR -20 570 85 473 279 17 8 chr1 15294753 15294883 -266898781 - L2 LINE L2 -5 3308 3178 384 306 38 72 chr1 15294895 15295104 -266898560 + MIR SINE MIR 10 211 -51 499 194 10 10 chr1 15295269 15295372 -266898292 - MER5A DNA MER1_type -83 106 4 328 241 12 0 chr1 15295611 15295694 -266897970 + MIR SINE MIR 63 146 -116 751 302 21 8 chr1 15295990 15296225 -266897439 - MIR SINE MIR -12 250 13 2182 81 3 3 chr1 15296251 15296685 -266896979 + AluSp SINE Alu 1 434 0 396 298 23 8 chr1 15297229 15297360 -266896304 - MIR SINE MIR -58 204 72 2284 72 0 0 chr1 15297370 15297661 -266896003 + AluSc SINE Alu 1 291 -18 622 209 129 25 chr1 15297873 15298036 -266895628 - MER5A DNA MER1_type 0 189 10 267 341 37 19 chr1 15298496 15298710 -266894954 + L2 LINE L2 2842 3059 -213 939 129 0 0 chr1 15298774 15298906 -266894758 - FLAM_C SINE Alu -1 132 1 923 215 13 66 chr1 15299150 15299378 -266894286 - MER20 DNA MER1_type -3 216 1 1572 198 0 3 chr1 15299397 15299680 -266893984 + AluJo SINE Alu 1 282 -30 312 27 0 0 chr1 15299683 15299720 -266893944 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 71 0 0 chr1 15299720 15299748 -266893916 + (GA)n Simple_repeat Simple_repeat 1 28 0 2203 100 3 0 chr1 15299765 15300064 -266893600 + AluSp SINE Alu 1 300 -13 384 266 108 7 chr1 15300118 15300257 -266893407 + L2 LINE L2 3161 3313 0 257 205 9 125 chr1 15300274 15300386 -266893278 + MIR SINE MIR 157 255 -7 1214 271 72 18 chr1 15301936 15302167 -266891497 - MLT1I LTR MaLR 0 409 147 1569 110 50 0 chr1 15302167 15302386 -266891278 + MER30 DNA MER1_type 1 230 0 1214 271 72 18 chr1 15302386 15302542 -266891122 - MLT1I LTR MaLR -262 147 1 339 311 99 0 chr1 15302554 15302705 -266890959 + L1MC3 LINE L1 5713 5878 -1907 345 156 0 31 chr1 15302705 15302769 -266890895 + LTR16C LTR ERVL 430 491 0 190 254 48 32 chr1 15302807 15302870 -266890794 - L3 LINE CR1 -142 1435 1372 846 163 363 0 chr1 15302911 15303151 -266890513 + MER58B DNA MER1_type 7 333 -8 207 371 43 9 chr1 15303837 15303953 -266889711 + MER5B DNA MER1_type 5 124 -54 863 168 0 0 chr1 15303953 15304084 -266889580 - FLAM_C SINE Alu -2 131 1 2397 56 7 3 chr1 15304097 15304399 -266889265 - AluY SINE Alu -7 304 2 2711 75 6 0 chr1 15304420 15304769 -266888895 - L1PB1 LINE L1 -1 6150 5800 180 247 14 123 chr1 15304769 15304842 -266888822 + MER5A DNA MER1_type 125 189 0 350 221 88 29 chr1 15304972 15305108 -266888556 + L1ME4a LINE L1 5977 6120 -1 236 212 15 0 chr1 15305625 15305691 -266887973 + CT-rich Low_complexity Low_complexity 2 68 0 371 227 33 93 chr1 15306178 15306328 -266887336 - L2 LINE L2 0 3313 3173 2104 123 0 0 chr1 15306352 15306652 -266887012 + AluSg SINE Alu 7 306 -4 449 281 20 77 chr1 15307577 15307773 -266885891 + MIR SINE MIR 47 231 -31 255 299 89 3 chr1 15307810 15307991 -266885673 + L2 LINE L2 3002 3244 -28 249 108 0 0 chr1 15307991 15308028 -266885636 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 234 191 0 0 chr1 15308217 15308264 -266885400 - ORSL DNA AcHobo 0 275 229 187 118 255 0 chr1 15309027 15309078 -266884586 + L2 LINE L2 2578 2641 -673 418 357 18 6 chr1 15309121 15309289 -266884375 - L2 LINE L2 -208 3105 2936 2263 92 0 0 chr1 15309302 15309596 -266884068 - AluSc SINE Alu -15 294 1 432 274 55 43 chr1 15309637 15309801 -266883863 + LTR67 LTR ERVL 391 556 -1 445 194 163 5 chr1 15310098 15310217 -266883447 + MIR SINE MIR 35 166 -42 375 276 111 53 chr1 15310341 15310584 -266883080 - MLT1K LTR MaLR -172 416 160 382 125 0 0 chr1 15310585 15310639 -266883025 - MLT1L LTR MaLR -414 201 148 1915 180 19 15 chr1 15310639 15311051 -266882613 - Charlie1 DNA MER1_type 0 2761 2348 261 341 11 0 chr1 15311236 15311327 -266882337 + MIR SINE MIR 144 235 -27 291 194 32 0 chr1 15312025 15312087 -266881577 + L2 LINE L2 3206 3269 -3 310 359 8 17 chr1 15312242 15312359 -266881305 + MIR SINE MIR 34 149 -59 260 282 0 12 chr1 15312900 15312985 -266880679 + C-rich Low_complexity Low_complexity 2 85 0 334 257 59 66 chr1 15313572 15313708 -266879956 + MIR SINE MIR 77 211 -51 2345 73 0 3 chr1 15313714 15314014 -266879650 + AluY SINE Alu 1 299 -12 1159 312 94 14 chr1 15314196 15314938 -266878726 - L2 LINE L2 0 3313 2495 2405 53 0 10 chr1 15315472 15315772 -266877892 - AluY SINE Alu -14 297 1 2224 114 0 3 chr1 15316106 15316414 -266877250 - AluSq SINE Alu -6 307 1 435 281 100 6 chr1 15317042 15317202 -266876462 - MIR SINE MIR -11 251 77 279 310 9 35 chr1 15317340 15317456 -266876208 + MIR SINE MIR 32 144 -118 792 103 8 0 chr1 15317460 15317577 -266876087 + AluSg/x SINE Alu 192 309 -3 250 211 35 18 chr1 15317618 15317675 -266875989 + L2 LINE L2 3249 3306 -7 2311 97 0 0 chr1 15317997 15318308 -266875356 - AluY SINE Alu 0 311 1 1866 130 10 20 chr1 15318308 15318607 -266875057 - AluSx SINE Alu -14 298 3 2037 92 7 0 chr1 15318811 15319121 -266874543 + AluY SINE Alu 1 312 0 2104 105 0 0 chr1 15319128 15319413 -266874251 + AluSc SINE Alu 1 285 -24 324 0 0 0 chr1 15319416 15319452 -266874212 + (TAA)n Simple_repeat Simple_repeat 3 38 0 282 197 30 0 chr1 15320245 15320311 -266873353 + MER5A DNA MER1_type 5 72 -117 2071 119 0 19 chr1 15320346 15320656 -266873008 + AluJb SINE Alu 1 304 -8 307 221 221 0 chr1 15320656 15320751 -266872913 + MER5A DNA MER1_type 61 182 -7 194 316 63 47 chr1 15320828 15321018 -266872646 - L2 LINE L2 -189 3083 2891 1543 140 20 48 chr1 15321353 15321491 -266872173 + AluJo SINE Alu 6 146 -166 2126 134 0 3 chr1 15321491 15321804 -266871860 + AluSx SINE Alu 1 312 0 1543 140 20 48 chr1 15321804 15321958 -266871706 + AluJo SINE Alu 146 290 -22 1697 107 119 8 chr1 15321967 15322228 -266871436 + AluSg1 SINE Alu 3 292 -17 376 242 91 95 chr1 15322237 15322468 -266871196 + MIR SINE MIR 33 262 0 330 217 22 43 chr1 15322453 15322545 -266871119 - MIR SINE MIR -95 167 78 * 1572 143 21 38 chr1 15322996 15323283 -266870381 + AluSx SINE Alu 1 282 -30 449 34 17 0 chr1 15323283 15323342 -266870322 + (TGAA)n Simple_repeat Simple_repeat 3 62 0 797 130 198 57 chr1 15323651 15323843 -266869821 - MER20 DNA MER1_type 0 219 1 733 296 30 9 chr1 15323984 15324214 -266869450 - Charlie8 DNA MER1_type -2181 236 2 402 258 43 45 chr1 15324424 15324569 -266869095 + MIR3 SINE MIR 15 155 -65 360 294 83 50 chr1 15325028 15325119 -266868545 - MIR3 SINE MIR -18 190 103 2047 122 26 0 chr1 15325119 15325423 -266868241 + AluSx SINE Alu 1 312 0 360 294 83 50 chr1 15325423 15325511 -266868153 - MIR3 SINE MIR -105 103 5 1387 129 0 0 chr1 15325732 15325926 -266867738 - AluJb SINE Alu -118 194 1 336 290 28 48 chr1 15325950 15326095 -266867569 - Charlie8 DNA MER1_type -2269 148 7 273 273 117 31 chr1 15326099 15326227 -266867437 + MIR SINE MIR 101 239 -23 750 201 38 11 chr1 15327312 15327496 -266866168 - MER5A DNA MER1_type 0 189 1 729 225 0 94 chr1 15327939 15328152 -266865512 + MIR SINE MIR 6 198 -64 2429 59 13 0 chr1 15328154 15328459 -266865205 + AluSp SINE Alu 1 309 -4 272 298 224 12 chr1 15328956 15329117 -266864547 + MIR SINE MIR 56 250 -12 1180 175 36 20 chr1 15329134 15329385 -266864279 + MIR SINE MIR 8 262 0 2100 110 7 26 chr1 15329417 15329726 -266863938 - AluSx SINE Alu -9 303 1 1601 181 7 7 chr1 15329887 15330174 -266863490 + AluJo SINE Alu 9 295 -17 402 319 84 31 chr1 15330764 15330990 -266862674 - MIR SINE MIR -12 250 13 315 222 42 0 chr1 15330991 15331091 -266862573 + MLT1F1 LTR MaLR 4 82 -460 276 30 0 0 chr1 15331093 15331126 -266862538 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2319 97 0 3 chr1 15331126 15331436 -266862228 - AluSc SINE Alu 0 309 1 1381 233 64 77 chr1 15331444 15331658 -266862006 + MLT1F1 LTR MaLR 99 314 -253 2205 109 0 0 chr1 15331658 15331960 -266861704 + AluSx SINE Alu 6 307 -5 234 0 0 0 chr1 15331960 15331986 -266861678 + (TA)n Simple_repeat Simple_repeat 2 27 0 1381 233 64 77 chr1 15331986 15332237 -266861427 + MLT1F1 LTR MaLR 312 559 -8 2217 84 7 0 chr1 15332413 15332709 -266860955 - AluSx SINE Alu -10 302 5 1552 143 62 65 chr1 15332937 15333273 -266860391 + MER7A DNA MER2_type 13 345 -1 180 0 0 0 chr1 15333514 15333534 -266860130 + (T)n Simple_repeat Simple_repeat 1 20 0 569 225 179 7 chr1 15333860 15334011 -266859653 - MER45A DNA AcHobo -1 177 1 405 39 0 0 chr1 15334391 15334442 -266859222 + (CA)n Simple_repeat Simple_repeat 2 52 0 692 275 100 63 chr1 15334683 15334945 -266858719 + Charlie8 DNA MER1_type 72 360 -2057 1961 151 0 0 chr1 15334945 15335257 -266858407 - AluSx SINE Alu 0 312 1 692 275 100 63 chr1 15335257 15335456 -266858208 + Charlie8 DNA MER1_type 360 550 -1867 2101 74 0 0 chr1 15335790 15336059 -266857605 + AluSg SINE Alu 34 302 -8 194 0 39 0 chr1 15337292 15337318 -266856346 + (CGGGGG)n Simple_repeat Simple_repeat 3 29 0 32 26 0 0 chr1 15337463 15337502 -266856162 + GC_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 15337667 15337690 -266855974 + GC_rich Low_complexity Low_complexity 1 23 0 477 260 0 0 chr1 15337795 15338070 -266855594 + C-rich Low_complexity Low_complexity 1 275 0 1799 138 7 14 chr1 15338173 15338469 -266855195 + AluSx SINE Alu 9 302 -10 774 239 15 20 chr1 15338471 15338672 -266854992 + MER20 DNA MER1_type 17 216 -3 443 335 103 0 chr1 15339151 15339345 -266854319 - MIR SINE MIR -1 261 48 249 300 8 46 chr1 15340234 15340364 -266853300 - LTR67 LTR ERVL -9 548 424 21 0 0 0 chr1 15341003 15341024 -266852640 + AT_rich Low_complexity Low_complexity 1 21 0 321 309 9 36 chr1 15341032 15341142 -266852522 + MIR SINE MIR 82 188 -74 667 319 138 6 chr1 15341146 15341500 -266852164 - MLT1J LTR MaLR -1 510 110 1994 98 3 11 chr1 15341520 15341844 -266851820 + AluSx SINE Alu 1 322 0 190 176 29 0 chr1 15342841 15342875 -266850789 - MIR SINE MIR -189 73 39 364 268 50 42 chr1 15343320 15343470 -266850194 + LTR67 LTR ERVL 380 514 -9 1719 166 10 10 chr1 15343530 15343820 -266849844 + AluJb SINE Alu 7 296 -16 181 203 14 81 chr1 15344104 15344178 -266849486 + L3 LINE CR1 1508 1576 -1 2108 120 0 7 chr1 15344324 15344633 -266849031 - AluSx SINE Alu -5 307 1 945 272 79 63 chr1 15344743 15345184 -266848480 - MLT1L LTR MaLR 0 615 168 699 164 45 79 chr1 15345971 15346148 -266847516 - MER20 DNA MER1_type 0 219 49 520 278 73 48 chr1 15346256 15346529 -266847135 + L2 LINE L2 3034 3313 0 306 270 120 10 chr1 15346638 15346738 -266846926 - MIR SINE MIR -122 140 30 575 218 55 12 chr1 15347678 15347843 -266845821 + MER104 DNA MER2_type 5 176 -4 290 316 30 38 chr1 15347846 15347979 -266845685 - MIR SINE MIR -105 157 26 454 315 45 6 chr1 15348225 15348403 -266845261 - MER91A DNA MER1_type -10 186 2 1841 189 3 3 chr1 15348550 15348846 -266844818 - AluJo SINE Alu -14 298 3 196 298 53 53 chr1 15349073 15349187 -266844477 + MIR SINE MIR 20 133 -129 1549 253 102 14 chr1 15349232 15349674 -266843990 + MLT1G1 LTR MaLR 73 553 -42 251 396 9 0 chr1 15349836 15349942 -266843722 + MIR SINE MIR 141 247 -15 2020 122 37 0 chr1 15350252 15350547 -266843117 - AluSg SINE Alu -4 306 1 252 356 19 10 chr1 15350930 15351034 -266842630 + MIR SINE MIR 141 245 -17 1403 255 40 24 chr1 15352211 15352631 -266841033 - MLT1E LTR MaLR -2 591 165 302 294 0 0 chr1 15352638 15352706 -266840958 + L1MC4 LINE L1 6621 6688 -1354 327 168 39 39 chr1 15352707 15352886 -266840778 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 279 217 56 0 chr1 15352887 15352964 -266840700 - MLT1E LTR MaLR -499 94 6 314 303 89 0 chr1 15352968 15353131 -266840533 - MIR SINE MIR -66 142 2 332 293 19 9 chr1 15353275 15353381 -266840283 + L2 LINE L2 3195 3301 -12 181 167 0 0 chr1 15353378 15353408 -266840256 - L2 LINE L2 0 3313 3284 * 355 250 12 0 chr1 15353540 15353620 -266840044 + L2 LINE L2 3219 3299 -14 666 292 83 52 chr1 15354319 15354805 -266838859 - LTR33 LTR ERVL 0 521 17 2147 123 0 3 chr1 15354805 15355098 -266838566 + AluSq SINE Alu 1 292 -21 666 292 83 52 chr1 15355098 15355115 -266838549 - LTR33 LTR ERVL -504 17 2 1869 216 25 8 chr1 15355338 15355740 -266837924 + MLT2C2 LTR ERVL 1 409 -55 2243 116 3 7 chr1 15355740 15356042 -266837622 - AluSx SINE Alu -11 301 1 495 253 37 47 chr1 15356095 15356285 -266837379 - MER5A DNA MER1_type -1 188 1 2064 137 3 39 chr1 15357174 15357284 -266836380 + MLT1B LTR MaLR 1 113 -277 2034 108 14 11 chr1 15357284 15357562 -266836102 + AluSx SINE Alu 20 298 -14 2064 137 3 39 chr1 15357562 15357815 -266835849 + MLT1B LTR MaLR 113 351 -39 194 260 10 125 chr1 15357815 15357911 -266835753 - MIR SINE MIR -57 151 89 583 231 46 1 chr1 15359521 15359680 -266833984 + MER20B DNA MER1_type 33 202 -17 2443 90 0 0 chr1 15359877 15360176 -266833488 + AluSx SINE Alu 1 299 -13 234 62 0 0 chr1 15360731 15360763 -266832901 + (CAT)n Simple_repeat Simple_repeat 2 33 0 842 246 32 14 chr1 15361542 15361762 -266831902 - MIR SINE MIR -36 226 3 218 314 194 16 chr1 15361894 15362018 -266831646 + L2 LINE L2 3160 3305 -8 185 292 42 14 chr1 15362045 15362117 -266831547 - MIR SINE MIR -142 120 47 253 354 112 6 chr1 15362920 15363081 -266830583 + MIR SINE MIR 20 197 -65 1682 114 0 11 chr1 15363303 15363566 -266830098 - L1PB1 LINE L1 -1 6150 5891 265 256 23 12 chr1 15364064 15364150 -266829514 - MER117 DNA MER1_type 0 197 111 575 281 47 31 chr1 15364688 15364944 -266828720 - MLT1J LTR MaLR -19 492 233 2503 84 0 0 chr1 15365232 15365541 -266828123 - AluY SINE Alu -2 309 1 2003 135 30 10 chr1 15365556 15365735 -266827929 - AluJb SINE Alu 0 312 123 213 39 0 0 chr1 15365735 15365761 -266827903 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2003 135 30 10 chr1 15365761 15365885 -266827779 - AluJb SINE Alu -189 123 3 335 179 0 15 chr1 15365935 15366002 -266827662 + MLT1I LTR MaLR 335 400 -9 2695 171 20 22 chr1 15367013 15367227 -266826437 + L1MB7 LINE L1 5615 5828 -356 1974 156 0 10 chr1 15367227 15367522 -266826142 + AluJb SINE Alu 2 293 -19 2695 171 20 22 chr1 15367522 15367862 -266825802 + L1MB7 LINE L1 5828 6168 -16 2322 93 3 3 chr1 15368481 15368792 -266824872 - AluY SINE Alu 0 311 1 2162 130 7 3 chr1 15368932 15369233 -266824431 + AluSx SINE Alu 1 302 -10 757 243 10 20 chr1 15369235 15369437 -266824227 + MER20 DNA MER1_type 17 216 -3 416 314 108 5 chr1 15369916 15370110 -266823554 - MIR SINE MIR -1 261 48 228 300 8 46 chr1 15371000 15371130 -266822534 - LTR67 LTR ERVL -9 548 424 21 0 0 0 chr1 15371769 15371790 -266821874 + AT_rich Low_complexity Low_complexity 1 21 0 311 309 9 36 chr1 15371798 15371908 -266821756 + MIR SINE MIR 82 188 -74 636 288 133 65 chr1 15371912 15372266 -266821398 - MLT1J LTR MaLR -1 452 72 2122 98 3 11 chr1 15372286 15372610 -266821054 + AluSx SINE Alu 1 322 0 190 176 29 0 chr1 15373607 15373641 -266820023 - MIR SINE MIR -189 73 39 359 268 50 42 chr1 15374086 15374236 -266819428 + LTR67 LTR ERVL 380 514 -9 1834 166 10 10 chr1 15374296 15374586 -266819078 + AluJb SINE Alu 7 296 -16 2305 120 0 3 chr1 15375090 15375398 -266818266 - AluSx SINE Alu -5 307 1 2605 69 0 0 chr1 15375419 15375723 -266817941 - AluY SINE Alu -7 304 1 225 300 75 33 chr1 15375749 15375869 -266817795 - L2 LINE L2 -2 3311 3187 442 257 74 27 chr1 15376560 15376708 -266816956 - MIR SINE MIR -62 200 46 26 50 0 0 chr1 15377833 15377873 -266815791 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr1 15378153 15378183 -266815481 + AT_rich Low_complexity Low_complexity 1 30 0 284 222 5 152 chr1 15378194 15378273 -266815391 - L1ME1 LINE L1 -263 5903 5814 2274 83 3 3 chr1 15378273 15378561 -266815103 - AluSp SINE Alu -25 288 1 284 222 5 152 chr1 15378561 15378613 -266815051 - L1ME1 LINE L1 -352 5814 5822 1707 148 94 4 chr1 15378613 15378780 -266814884 - AluJo SINE Alu -10 302 99 219 36 0 0 chr1 15378780 15378808 -266814856 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1707 148 94 4 chr1 15378808 15378917 -266814747 - AluJo SINE Alu -213 99 1 284 222 5 152 chr1 15378917 15379022 -266814642 - L1ME1 LINE L1 -343 5823 5704 1195 182 35 117 chr1 15379022 15379391 -266814273 - MLT1A1 LTR MaLR 0 365 27 226 235 0 0 chr1 15379434 15379485 -266814179 - L1ME1 LINE L1 -510 5660 5610 1947 152 0 3 chr1 15379701 15379984 -266813680 - AluSx SINE Alu -30 282 1 559 291 87 12 chr1 15380258 15380499 -266813165 + MIR SINE MIR 4 262 0 210 345 69 0 chr1 15382065 15382152 -266811512 - L2 LINE L2 -324 2989 2897 2384 62 41 3 chr1 15382198 15382490 -266811174 + AluY SINE Alu 1 303 -8 475 250 36 0 chr1 15382658 15382770 -266810894 - MER63 DNA MER1_type -53 783 42 832 304 110 13 chr1 15382873 15383320 -266810344 + L2 LINE L2 2824 3313 0 32 0 0 0 chr1 15383930 15383962 -266809702 + GC_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 15383976 15383997 -266809667 + GC_rich Low_complexity Low_complexity 1 21 0 372 308 128 0 chr1 15384776 15384948 -266808716 - MIR SINE MIR -13 249 56 388 323 99 0 chr1 15385267 15385428 -266808236 + MIR SINE MIR 79 255 -7 707 269 57 46 chr1 15386615 15386897 -266806767 - L2 LINE L2 -1 3312 3028 439 290 22 0 chr1 15387323 15387461 -266806203 - MIR SINE MIR -79 183 43 2574 43 3 3 chr1 15387519 15387818 -266805846 + AluY SINE Alu 1 299 -12 555 278 68 19 chr1 15387850 15388055 -266805609 - MIR SINE MIR -43 219 5 395 83 17 0 chr1 15388698 15388758 -266804906 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2080 132 3 10 chr1 15388787 15389082 -266804582 - AluSx SINE Alu -17 295 3 311 293 54 20 chr1 15389122 15389269 -266804395 - L1M4 LINE L1 -3343 2803 2652 365 110 22 143 chr1 15389636 15389687 -266803977 - MADE1 DNA Mariner 0 80 43 2059 150 0 3 chr1 15389687 15389980 -266803684 + AluSx SINE Alu 3 294 -18 365 110 22 143 chr1 15389980 15390019 -266803645 - MADE1 DNA Mariner -37 43 1 1225 276 93 30 chr1 15390166 15390662 -266803002 + MLT1K LTR MaLR 56 582 -6 287 274 192 27 chr1 15391469 15391615 -266802049 - MIR SINE MIR -58 204 35 2323 90 3 0 chr1 15392872 15393171 -266800493 + AluSg SINE Alu 1 300 -10 454 256 110 52 chr1 15393335 15393526 -266800138 + MIR SINE MIR 18 219 -43 183 275 25 50 chr1 15393646 15393726 -266799938 + L3 LINE CR1 1396 1473 -104 1549 223 95 19 chr1 15394252 15394674 -266798990 + MLT1C LTR MaLR 6 459 -8 273 215 8 74 chr1 15394676 15394797 -266798867 + L2 LINE L2 2888 3000 -272 1876 167 7 0 chr1 15395028 15395322 -266798342 + AluJo SINE Alu 1 296 -16 318 323 21 0 chr1 15396074 15396170 -266797494 + MIR SINE MIR 94 191 -71 182 152 0 22 chr1 15396607 15396653 -266797011 + (CATAG)n Simple_repeat Simple_repeat 5 49 0 263 223 34 40 chr1 15396658 15396833 -266796831 + (CATCG)n Simple_repeat Simple_repeat 5 178 0 399 231 99 16 chr1 15396980 15397101 -266796563 - MIR SINE MIR -119 143 13 970 163 0 0 chr1 15397280 15397433 -266796231 + FRAM SINE Alu 1 153 -23 586 280 17 59 chr1 15398801 15398917 -266794747 + MIR SINE MIR 20 122 -140 1989 138 7 0 chr1 15398917 15399221 -266794443 - AluSx SINE Alu -4 308 3 586 280 17 59 chr1 15399221 15399340 -266794324 + MIR SINE MIR 122 245 -17 387 0 0 0 chr1 15400232 15400275 -266793389 + (TG)n Simple_repeat Simple_repeat 1 43 0 359 259 25 99 chr1 15400328 15400490 -266793174 - MLT1K LTR MaLR -382 206 57 258 287 59 37 chr1 15400505 15400641 -266793023 - L2 LINE L2 -940 2374 2236 251 275 174 20 chr1 15400729 15400861 -266792803 + MIR SINE MIR 26 185 -77 1000 169 106 0 chr1 15400861 15401050 -266792614 + MER3 DNA MER1_type 1 209 0 251 275 174 20 chr1 15401050 15401066 -266792598 + MIR SINE MIR 185 197 -65 960 161 0 0 chr1 15401328 15401561 -266792103 + (TGGA)n Simple_repeat Simple_repeat 1 233 0 1134 117 0 0 chr1 15401597 15401776 -266791888 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 2685 256 136 22 chr1 15401784 15403041 -266790623 - L2 LINE L2 0 3313 1862 534 31 0 0 chr1 15403067 15403131 -266790533 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 208 158 26 0 chr1 15403419 15403457 -266790207 + GA-rich Low_complexity Low_complexity 2 40 0 2328 89 3 0 chr1 15403646 15403949 -266789715 + AluSp SINE Alu 1 304 -9 204 125 0 0 chr1 15404075 15404107 -266789557 + (A)n Simple_repeat Simple_repeat 1 32 0 611 238 104 36 chr1 15404200 15404393 -266789271 - MER63A DNA MER1_type -4 206 1 805 235 37 60 chr1 15405110 15405378 -266788286 + MIR SINE MIR 1 262 0 593 217 68 190 chr1 15405519 15406123 -266787541 - MLT1K LTR MaLR 0 588 59 756 255 20 51 chr1 15406160 15406415 -266787249 + MIR SINE MIR 15 261 -1 351 287 7 68 chr1 15406597 15406759 -266786905 + MIR3 SINE MIR 2 153 -66 923 138 88 88 chr1 15406843 15407060 -266786604 - MER20 DNA MER1_type 0 219 3 299 195 146 12 chr1 15407070 15407152 -266786512 + MIR3 SINE MIR 71 163 -45 417 315 17 72 chr1 15407710 15407945 -266785719 + MIR SINE MIR 28 249 -13 266 329 196 7 chr1 15408895 15409038 -266784626 + MIR SINE MIR 90 259 -3 269 357 9 9 chr1 15409217 15409329 -266784335 + MIR SINE MIR 24 135 -127 662 169 137 0 chr1 15410053 15410212 -266783452 + MER5A DNA MER1_type 5 188 -1 255 385 8 8 chr1 15410214 15410331 -266783333 - MIR SINE MIR -122 140 24 198 281 167 10 chr1 15410338 15410434 -266783230 - L2 LINE L2 -2 3311 3201 468 300 98 37 chr1 15410614 15410822 -266782842 - MIR SINE MIR -33 229 19 286 214 0 0 chr1 15411397 15411453 -266782211 - MIR SINE MIR -116 146 91 2761 156 31 11 chr1 15411591 15412039 -266781625 - MSTB2 LTR MaLR 0 457 1 242 292 139 0 chr1 15412939 15413055 -266780609 - MIR SINE MIR -33 175 45 222 344 153 6 chr1 15414118 15414275 -266779389 + L3b LINE CR1 1194 1373 -210 456 273 67 27 chr1 15414341 15414482 -266779182 + MIR SINE MIR 74 223 -39 1714 138 29 55 chr1 15414482 15414794 -266778870 + AluJb SINE Alu 1 304 -8 1727 150 102 16 chr1 15415050 15415423 -266778241 - L1MB8 LINE L1 0 6178 5774 2293 92 0 3 chr1 15415440 15415744 -266777920 - AluSx SINE Alu 0 312 10 329 265 49 39 chr1 15416921 15417023 -266776641 - L2 LINE L2 0 3272 3170 180 0 0 0 chr1 15417185 15417205 -266776459 + (CGGGG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 15417227 15417248 -266776416 + GC_rich Low_complexity Low_complexity 1 21 0 383 308 128 0 chr1 15418028 15418200 -266775464 - MIR SINE MIR -13 249 56 348 311 102 12 chr1 15418519 15418686 -266774978 + MIR SINE MIR 79 260 -2 727 269 57 46 chr1 15419868 15420150 -266773514 - L2 LINE L2 -1 3312 3028 454 290 22 0 chr1 15420576 15420714 -266772950 - MIR SINE MIR -79 183 43 2488 46 3 0 chr1 15420772 15421076 -266772588 + AluY SINE Alu 1 305 -6 574 259 36 24 chr1 15421548 15421714 -266771950 + MIR SINE MIR 10 177 -85 21 57 0 0 chr1 15421839 15421874 -266771790 + AT_rich Low_complexity Low_complexity 1 35 0 240 318 139 8 chr1 15423128 15423257 -266770407 - MIR SINE MIR -12 250 105 218 221 38 114 chr1 15423589 15423747 -266769917 - MIR3 SINE MIR -9 199 54 1852 142 0 39 chr1 15423758 15424069 -266769595 + AluSx SINE Alu 1 299 -13 201 274 82 14 chr1 15424223 15424296 -266769368 - MER5A DNA MER1_type -111 78 1 331 238 0 25 chr1 15424361 15424441 -266769223 - FAM SINE Alu -25 150 73 386 195 172 0 chr1 15425100 15425187 -266768477 + MER3 DNA MER1_type 100 201 -8 1536 192 18 0 chr1 15425404 15425680 -266767984 - L1MB4 LINE L1 0 6180 5900 2093 120 0 3 chr1 15425695 15425996 -266767668 - AluSq SINE Alu -13 300 1 1059 195 0 0 chr1 15426236 15426410 -266767254 - FAM SINE Alu -1 174 1 2424 51 0 25 chr1 15426444 15426758 -266766906 - AluY SINE Alu -5 306 1 2372 75 3 0 chr1 15426803 15427108 -266766556 - AluSg1 SINE Alu -3 306 1 375 308 123 0 chr1 15427205 15427335 -266766329 + L3 LINE CR1 1342 1487 -90 716 129 0 0 chr1 15427834 15427960 -266765704 - AluSp/q SINE Alu 0 310 185 841 178 50 22 chr1 15428048 15428228 -266765436 + MER5A DNA MER1_type 5 189 0 187 98 0 49 chr1 15428268 15428309 -266765355 + (TCTCCC)n Simple_repeat Simple_repeat 6 44 0 260 297 79 10 chr1 15428733 15428834 -266764830 + MIR SINE MIR 57 164 -98 543 254 0 0 chr1 15428992 15429102 -266764562 - MER81 DNA DNA 0 114 5 216 286 255 0 chr1 15429241 15429339 -266764325 - L2 LINE L2 -6 3307 3185 488 212 131 7 chr1 15430702 15430839 -266762825 + MIR SINE MIR 34 187 -75 2288 90 0 0 chr1 15430863 15431163 -266762501 + AluSq SINE Alu 1 300 -13 353 218 39 13 chr1 15431386 15431464 -266762200 + MIR SINE MIR 90 169 -93 2085 129 3 0 chr1 15431565 15431875 -266761789 - AluSx SINE Alu -1 311 1 1768 130 7 20 chr1 15431877 15432176 -266761488 - AluJo SINE Alu -17 295 1 560 348 36 16 chr1 15432855 15433102 -266760562 - L3 LINE CR1 -116 1461 1210 2163 89 3 25 chr1 15433503 15433819 -266759845 - AluSx SINE Alu 0 312 4 497 16 16 0 chr1 15435593 15435655 -266758009 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr1 15435674 15435695 -266757969 + AT_rich Low_complexity Low_complexity 1 21 0 603 216 174 12 chr1 15436135 15436302 -266757362 - MIR SINE MIR 0 262 69 2378 75 0 7 chr1 15436393 15436700 -266756964 + AluSx SINE Alu 1 305 -7 279 284 96 8 chr1 15437626 15437750 -266755914 + MIR SINE MIR 39 176 -32 505 329 99 0 chr1 15438538 15438760 -266754904 - MIR SINE MIR -8 254 11 227 242 16 0 chr1 15438752 15438814 -266754850 - MIR SINE MIR -106 156 94 * 1792 83 0 8 chr1 15438926 15439166 -266754498 - AluY SINE Alu 0 311 74 659 267 119 14 chr1 15440197 15440407 -266753257 + MIR SINE MIR 13 244 -18 659 225 68 55 chr1 15440758 15441253 -266752411 - MLT1K LTR MaLR -8 580 3 1903 128 14 0 chr1 15441477 15441793 -266751871 + AluSx SINE Alu 1 320 0 270 269 154 46 chr1 15443595 15443725 -266749939 + MIR SINE MIR 109 252 -10 1939 137 3 13 chr1 15444046 15444375 -266749289 - AluSx SINE Alu 0 312 5 333 0 0 0 chr1 15444843 15444880 -266748784 + (TG)n Simple_repeat Simple_repeat 2 38 0 349 114 38 76 chr1 15445099 15445178 -266748486 - L1ME2 LINE L1 0 6164 6089 313 306 160 7 chr1 15445500 15445644 -266748020 - MIR SINE MIR -65 197 32 221 293 61 0 chr1 15445668 15445750 -266747914 - L2 LINE L2 -23 3290 3204 881 292 29 16 chr1 15445984 15446227 -266747437 + MIR SINE MIR 7 252 -10 25 31 0 0 chr1 15446243 15446275 -266747389 + AT_rich Low_complexity Low_complexity 1 32 0 453 292 56 31 chr1 15446365 15446560 -266747104 - MLT1J LTR MaLR -213 298 99 538 262 82 16 chr1 15447136 15447277 -266746387 + MER3 DNA MER1_type 15 172 -37 2082 103 14 0 chr1 15447277 15447567 -266746097 + AluY SINE Alu 1 294 -17 236 304 0 0 chr1 15447567 15447636 -266746028 - MER3 DNA MER1_type -121 88 20 538 262 82 16 chr1 15447567 15447608 -266746056 + MER3 DNA MER1_type 172 209 0 238 325 0 0 chr1 15447703 15447786 -266745878 - MIR SINE MIR -87 121 39 240 256 238 17 chr1 15447860 15448049 -266745615 - MIR3 SINE MIR -21 241 15 514 159 175 0 chr1 15448523 15448649 -266745015 - MER53 DNA DNA -10 179 32 211 302 35 35 chr1 15448734 15448820 -266744844 - MIR SINE MIR -82 126 41 2285 86 0 19 chr1 15448926 15449239 -266744425 + AluSq SINE Alu 7 313 0 250 284 11 57 chr1 15449993 15450081 -266743583 - L2 LINE L2 -7 3265 3182 222 290 103 0 chr1 15450222 15450367 -266743297 - L2 LINE L2 -266 3047 2888 223 174 22 0 chr1 15451413 15451459 -266742205 + G-rich Low_complexity Low_complexity 3 49 0 408 287 120 12 chr1 15451541 15451708 -266741956 - L2 LINE L2 -35 3278 3094 321 318 71 9 chr1 15451836 15452047 -266741617 - L2 LINE L2 -246 3067 2844 699 262 36 27 chr1 15452755 15452980 -266740684 + MIR SINE MIR 8 234 -28 341 260 63 47 chr1 15454401 15454528 -266739136 - MLT1J2 LTR MaLR -2 448 320 433 262 99 0 chr1 15454575 15454716 -266738948 - MLT1J LTR MaLR -349 162 8 192 250 174 22 chr1 15455546 15455638 -266738026 + MIR SINE MIR 102 207 -55 399 243 144 35 chr1 15455855 15456028 -266737636 - MIR SINE MIR -14 248 57 269 203 76 38 chr1 15456125 15456204 -266737460 + MIR SINE MIR 13 94 -168 4372 76 21 2 chr1 15456229 15456798 -266736866 - L1PA8 LINE L1 -2 6170 5591 232 200 256 11 chr1 15456860 15456950 -266736714 + MIR SINE MIR 124 235 -27 1710 155 45 7 chr1 15457631 15457922 -266735742 - AluJb SINE Alu -10 302 1 715 189 0 57 chr1 15458101 15458276 -266735388 - L1ME4a LINE L1 -236 5885 5721 1937 179 67 77 chr1 15458360 15458575 -266735089 - Charlie1 DNA MER1_type 0 2761 2545 2128 116 7 0 chr1 15458575 15458878 -266734786 - AluSx SINE Alu -3 309 5 1937 179 67 77 chr1 15458878 15459276 -266734388 - Charlie1 DNA MER1_type -216 2545 2154 2021 112 10 7 chr1 15459276 15459571 -266734093 - AluSx SINE Alu -16 296 1 1610 173 65 127 chr1 15460050 15460524 -266733140 + MLT1D LTR MaLR 8 447 -58 3898 81 7 37 chr1 15460524 15461065 -266732599 - MER1A DNA MER1_type 0 527 3 1610 173 65 127 chr1 15461065 15461117 -266732547 + MLT1D LTR MaLR 447 501 -4 183 42 0 0 chr1 15462403 15462427 -266731237 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2108 104 0 0 chr1 15462436 15462716 -266730948 - AluSx SINE Alu -32 280 1 371 187 91 20 chr1 15462725 15462846 -266730818 - L1MC3 LINE L1 0 7769 6255 253 132 0 0 chr1 15462890 15462928 -266730736 - MLT1I LTR MaLR -274 135 98 367 351 21 38 chr1 15463560 15463718 -266729946 - MIR SINE MIR -8 254 100 2084 121 7 7 chr1 15463718 15464025 -266729639 + AluSg SINE Alu 1 307 -3 367 351 21 38 chr1 15464025 15464105 -266729559 - MIR SINE MIR -162 100 20 225 245 19 0 chr1 15464158 15464211 -266729453 + GA-rich Low_complexity Low_complexity 5 58 0 920 58 0 0 chr1 15464272 15464392 -266729272 - AluY SINE Alu 0 311 192 2215 101 3 0 chr1 15465119 15465417 -266728247 - AluSq SINE Alu -14 299 1 313 329 36 7 chr1 15465548 15465688 -266727976 - MIR SINE MIR -9 253 110 455 276 0 31 chr1 15465820 15465902 -266727762 - L2 LINE L2 0 3313 3235 3975 57 36 0 chr1 15465902 15466397 -266727267 - LTR10D LTR ERV1 0 513 1 455 276 0 31 chr1 15466397 15466441 -266727223 - L2 LINE L2 -78 3235 3191 1650 226 88 11 chr1 15466450 15466942 -266726722 - MLT1H1 LTR MaLR -4 551 3 344 322 102 23 chr1 15467014 15467356 -266726308 + L1PB4 LINE L1 5575 5943 -213 * 1375 254 85 8 chr1 15467053 15467559 -266726105 + L1ME2 LINE L1 5620 6327 -7 35 71 0 0 chr1 15468130 15468200 -266725464 + AT_rich Low_complexity Low_complexity 1 70 0 270 219 145 0 chr1 15468249 15468318 -266725346 - MIR SINE MIR -63 145 106 2418 70 0 3 chr1 15468352 15468664 -266725000 + AluY SINE Alu 1 311 0 829 189 0 7 chr1 15468759 15468912 -266724752 - AluJb SINE Alu -1 311 160 2140 80 0 11 chr1 15469374 15469660 -266724004 + AluSg SINE Alu 1 283 -27 207 0 0 0 chr1 15469664 15469687 -266723977 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1291 80 6 0 chr1 15470484 15470660 -266723004 - AluSp SINE Alu -2 311 135 1745 98 4 0 chr1 15471518 15471753 -266721911 - AluSx SINE Alu -24 288 53 501 75 15 0 chr1 15471755 15471822 -266721842 + AluSg1 SINE Alu 25 92 -217 1293 125 0 0 chr1 15471922 15472114 -266721550 + AluSg/x SINE Alu 115 306 -4 413 275 203 6 chr1 15472383 15472553 -266721111 + MIR SINE MIR 26 235 -27 2146 124 0 9 chr1 15472553 15472868 -266720796 - AluSx SINE Alu 0 312 1 413 275 203 6 chr1 15472868 15472879 -266720785 + MIR SINE MIR 235 243 -19 267 299 45 0 chr1 15474070 15474137 -266719527 - MER91A DNA MER1_type 0 196 127 594 322 16 11 chr1 15474243 15474426 -266719238 - MER91A DNA MER1_type -12 184 1 547 318 19 5 chr1 15474727 15474938 -266718726 - MIR SINE MIR -44 218 5 2096 121 10 0 chr1 15475097 15475404 -266718260 - AluSg SINE Alu 0 310 1 889 261 131 4 chr1 15476038 15476315 -266717349 + L1MC/D LINE L1 5406 5716 -698 2152 102 0 0 chr1 15476339 15476623 -266717041 + AluSq SINE Alu 1 284 -29 206 32 32 0 chr1 15476623 15476654 -266717010 + (TTAAA)n Simple_repeat Simple_repeat 3 34 0 1159 271 94 38 chr1 15476654 15476764 -266716900 + L1MC4a LINE L1 6337 6439 -1369 1729 125 35 64 chr1 15476764 15477076 -266716588 + AluSx SINE Alu 1 303 -9 1159 271 94 38 chr1 15477076 15477538 -266716126 + L1MC4a LINE L1 6439 6941 -867 2197 80 0 0 chr1 15477555 15477831 -266715833 + AluSg SINE Alu 21 296 -14 354 139 17 46 chr1 15477885 15477965 -266715699 + AluJo SINE Alu 1 59 -243 1508 167 7 7 chr1 15477966 15478236 -266715428 + AluJo SINE Alu 40 309 -3 304 183 127 0 chr1 15478257 15478328 -266715336 + L1MC4a LINE L1 7300 7357 -451 284 290 8 105 chr1 15478350 15478402 -266715262 + L1MC4 LINE L1 7542 7597 -445 2284 100 0 3 chr1 15478402 15478712 -266714952 + AluSg SINE Alu 2 310 0 284 290 8 105 chr1 15478712 15478907 -266714757 + L1MC4 LINE L1 7597 7765 -277 491 278 178 35 chr1 15479636 15479892 -266713772 - L2 LINE L2 -6 3307 3089 2282 81 0 3 chr1 15479892 15480188 -266713476 + AluSg SINE Alu 1 295 -15 491 278 178 35 chr1 15480188 15480583 -266713081 - L2 LINE L2 -224 3089 2576 2117 113 3 3 chr1 15481873 15482175 -266711489 + AluSx SINE Alu 1 302 -10 586 326 77 0 chr1 15482259 15482455 -266711209 + MIR SINE MIR 48 258 -4 408 261 72 0 chr1 15482658 15482769 -266710895 - MIR SINE MIR -70 192 74 857 182 62 84 chr1 15482834 15482888 -266710776 + MER58A DNA MER1_type 2 56 -2364 1815 145 0 3 chr1 15482888 15483203 -266710461 - AluJb SINE Alu 0 314 1 857 182 62 84 chr1 15483203 15483371 -266710293 + MER58A DNA MER1_type 56 221 -3 1748 194 120 46 chr1 15483419 15483750 -266709914 + MLT1C LTR MaLR 1 373 -94 2099 92 10 7 chr1 15483750 15484055 -266709609 + AluSx SINE Alu 1 306 -6 1748 194 120 46 chr1 15484055 15484156 -266709508 + MLT1C LTR MaLR 373 465 -2 2077 127 10 0 chr1 15485316 15485623 -266708041 - AluSx SINE Alu -2 310 1 240 62 0 62 chr1 15485623 15485671 -266707993 + L1MB3 LINE L1 6128 6172 -11 300 224 0 0 chr1 15485671 15485758 -266707906 - AluSq/x SINE Alu -168 135 66 2169 92 0 3 chr1 15486270 15486565 -266707099 + AluSp SINE Alu 4 297 -16 382 347 28 0 chr1 15487783 15487927 -266705737 + MIR SINE MIR 44 191 -71 1853 89 0 4 chr1 15488476 15488724 -266704940 + AluSx SINE Alu 55 301 -11 401 326 48 0 chr1 15488925 15489072 -266704592 + Charlie8 DNA MER1_type 37 190 -2227 305 320 50 50 chr1 15489384 15489565 -266704099 + L2 LINE L2 3075 3255 -17 421 289 104 55 chr1 15489947 15490264 -266703400 + L2 LINE L2 2833 3180 -133 2227 96 3 0 chr1 15490264 15490621 -266703043 - AluSp SINE Alu 0 313 1 421 289 104 55 chr1 15490621 15490743 -266702921 + L2 LINE L2 3180 3294 -19 434 191 24 0 chr1 15490916 15491000 -266702664 + MIR SINE MIR 58 143 -119 539 241 95 78 chr1 15491512 15491623 -266702041 - MIR SINE MIR -18 244 136 2217 101 0 3 chr1 15491623 15491931 -266701733 - AluSx SINE Alu -5 307 1 539 241 95 78 chr1 15491931 15492051 -266701613 - MIR SINE MIR -126 136 9 988 177 0 0 chr1 15492107 15492271 -266701393 + AluJo SINE Alu 123 286 -26 334 306 78 6 chr1 15492298 15492468 -266701196 + MIR3 SINE MIR 7 187 -75 2500 173 34 39 chr1 15493021 15493529 -266700135 + MLT1D LTR MaLR 1 505 0 187 336 133 8 chr1 15493653 15493781 -266699883 + MIR SINE MIR 102 245 -17 1902 154 3 0 chr1 15493903 15494201 -266699463 + AluJo SINE Alu 1 299 -13 1823 123 30 43 chr1 15494263 15494563 -266699101 + AluSx SINE Alu 3 298 -14 252 328 148 0 chr1 15494584 15494706 -266698958 + MIR SINE MIR 111 250 -12 2589 45 0 0 chr1 15494950 15495261 -266698403 - AluY SINE Alu 0 311 1 526 299 7 0 chr1 15495533 15495670 -266697994 + MIR SINE MIR 3 140 -122 360 280 59 81 chr1 15495704 15495775 -266697889 - MIR SINE MIR -34 228 157 2177 117 0 0 chr1 15495775 15496084 -266697580 + AluSx SINE Alu 1 309 -3 261 0 0 0 chr1 15496087 15496116 -266697548 + (CA)n Simple_repeat Simple_repeat 2 30 0 360 280 59 81 chr1 15496116 15496226 -266697438 - MIR SINE MIR -107 155 47 533 253 7 27 chr1 15496453 15496603 -266697061 + L1MA10 LINE L1 6186 6332 -2 402 252 114 0 chr1 15497256 15497387 -266696277 + MER104 DNA Tc2 1 146 -34 670 290 16 5 chr1 15497486 15497679 -266695985 + MIR SINE MIR 39 233 -29 483 234 57 35 chr1 15497830 15497971 -266695693 + MIR SINE MIR 50 193 -69 189 0 0 0 chr1 15498537 15498558 -266695106 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1775 159 3 20 chr1 15498585 15498886 -266694778 + AluSx SINE Alu 1 296 -16 643 212 244 5 chr1 15499639 15499856 -266693808 - L2 LINE L2 0 3313 3045 2576 45 0 3 chr1 15499856 15500165 -266693499 + AluY SINE Alu 1 308 -3 356 261 100 1 chr1 15501425 15501564 -266692100 + MIR SINE MIR 40 192 -55 2352 217 73 59 chr1 15502800 15503468 -266690196 - L1MC5 LINE L1 -35 7926 7240 2314 59 7 7 chr1 15503468 15503771 -266689893 - AluY SINE Alu -8 303 1 2352 217 73 59 chr1 15503771 15504033 -266689631 - L1MC5 LINE L1 -721 7240 6983 218 361 41 8 chr1 15504214 15504336 -266689328 - MIR SINE MIR -88 174 49 496 224 29 92 chr1 15505170 15505344 -266688320 - MIR SINE MIR -92 170 8 219 321 115 52 chr1 15505364 15505616 -266688048 - L3b LINE CR1 -125 1458 1191 1977 135 7 0 chr1 15505721 15506017 -266687647 + AluSx SINE Alu 1 298 -14 781 269 16 97 chr1 15506281 15506553 -266687111 - L2 LINE L2 -1 3312 3084 2026 122 7 7 chr1 15506553 15506856 -266686808 + AluSx SINE Alu 1 303 -9 781 269 16 97 chr1 15506856 15507006 -266686658 - L2 LINE L2 -229 3084 2924 237 273 173 0 chr1 15507297 15507407 -266686257 + MIR SINE MIR 17 145 -63 464 266 65 12 chr1 15507995 15508164 -266685500 + MIR SINE MIR 67 244 -18 2209 87 0 0 chr1 15508205 15508532 -266685132 - AluSc SINE Alu 0 309 1 227 323 53 30 chr1 15508865 15508998 -266684666 + L2 LINE L2 2561 2696 -618 282 264 58 0 chr1 15509074 15509161 -266684503 + MLT1D LTR MaLR 48 139 -366 211 125 0 62 chr1 15509175 15509223 -266684441 + (GAGAA)n Simple_repeat Simple_repeat 3 47 0 384 245 36 54 chr1 15509297 15509371 -266684293 + MLT1C LTR MaLR 345 397 -70 2121 118 0 0 chr1 15509371 15509667 -266683997 - AluSq SINE Alu -17 296 1 384 245 36 54 chr1 15509667 15509737 -266683927 + MLT1C LTR MaLR 397 467 0 348 303 138 44 chr1 15509788 15510097 -266683567 + L2 LINE L2 2878 3231 -82 2093 119 0 0 chr1 15510097 15510390 -266683274 + AluSx SINE Alu 1 293 -19 348 303 138 44 chr1 15510390 15510463 -266683201 + L2 LINE L2 3231 3296 -17 2310 78 0 0 chr1 15510603 15510897 -266682767 + AluSq SINE Alu 1 294 -19 270 344 17 14 chr1 15511990 15512132 -266681532 - MIR SINE MIR -63 145 30 734 258 83 22 chr1 15512362 15512457 -266681207 + MIR SINE MIR 15 103 -159 2108 125 0 6 chr1 15512457 15512770 -266680894 - AluSx SINE Alu -1 311 1 734 258 83 22 chr1 15512770 15512903 -266680761 + MIR SINE MIR 103 257 -5 1312 301 46 21 chr1 15513345 15513866 -266679798 - L1ME3A LINE L1 0 6170 5637 329 232 58 103 chr1 15513866 15514029 -266679635 - MIR SINE MIR -64 144 6 1702 115 163 19 chr1 15514901 15515214 -266678450 - THE1B LTR MaLR 0 364 7 339 246 186 0 chr1 15515498 15515616 -266678048 - MIR SINE MIR -108 154 15 1599 278 195 28 chr1 15516426 15517624 -266676040 - L2 LINE L2 -252 3061 1641 569 241 0 49 chr1 15518132 15518294 -266675370 - L2 LINE L2 -2 3311 3158 242 197 106 0 chr1 15518577 15518643 -266675021 - MER117 DNA MER1_type -28 169 97 264 283 22 11 chr1 15518791 15518883 -266674781 + MIR SINE MIR 20 112 -96 672 71 0 0 chr1 15518924 15519008 -266674656 + AluS SINE Alu 3 86 -226 222 277 96 12 chr1 15519514 15519597 -266674067 - MIR3 SINE MIR -14 194 105 1793 163 21 15 chr1 15519738 15520070 -266673594 - MER2 DNA MER2_type -3 342 9 191 304 98 20 chr1 15520092 15520152 -266673512 - MIR SINE MIR -123 139 85 2493 42 3 0 chr1 15520152 15520461 -266673203 - AluY SINE Alu -1 310 1 191 304 98 20 chr1 15520461 15520502 -266673162 - MIR SINE MIR -177 85 30 315 267 86 0 chr1 15520515 15520620 -266673044 + MIR3 SINE MIR 74 187 -21 207 0 0 0 chr1 15520907 15520930 -266672734 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 324 296 53 23 chr1 15522158 15522290 -266671374 - MLT1J LTR MaLR -334 177 42 326 257 97 26 chr1 15522323 15522436 -266671228 + L2 LINE L2 3179 3299 -14 211 228 44 20 chr1 15523107 15523201 -266670463 + MIR SINE MIR 37 163 -99 2045 115 23 0 chr1 15523337 15523642 -266670022 - AluSx SINE Alu 0 312 1 423 0 0 0 chr1 15524635 15524682 -266668982 + (TTGTG)n Simple_repeat Simple_repeat 3 49 0 1492 199 10 23 chr1 15524683 15524989 -266668675 - AluJb SINE Alu -10 302 1 1783 150 16 57 chr1 15525003 15525262 -266668402 - L1MB8 LINE L1 0 6178 5937 2486 71 0 0 chr1 15525262 15525573 -266668091 - AluY SINE Alu 0 311 1 1783 150 16 57 chr1 15525573 15525680 -266667984 - L1MB8 LINE L1 -241 5937 5827 1824 160 23 26 chr1 15525680 15525748 -266667916 - MER2 DNA MER2_type -1 344 277 2217 111 0 0 chr1 15525748 15526054 -266667610 + AluSx SINE Alu 1 306 -6 1824 160 23 26 chr1 15526054 15526328 -266667336 - MER2 DNA MER2_type -68 277 3 2522 207 36 15 chr1 15526331 15526819 -266666845 - L1MB8 LINE L1 -351 5827 5351 189 0 0 0 chr1 15526819 15526840 -266666824 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2006 118 0 4 chr1 15526841 15527121 -266666543 - AluSx SINE Alu -33 279 1 2522 207 36 15 chr1 15527121 15527354 -266666310 - L1MB8 LINE L1 -826 5352 5091 186 315 21 63 chr1 15527592 15527735 -266665929 + MIR3 SINE MIR 1 137 -71 533 239 122 42 chr1 15528157 15528381 -266665283 + MIR SINE MIR 13 247 -15 309 287 38 70 chr1 15528395 15528552 -266665112 - L2 LINE L2 -135 3137 2986 1541 141 36 0 chr1 15528647 15528895 -266664769 + AluSx SINE Alu 1 257 -55 356 166 61 0 chr1 15529319 15529482 -266664182 + (CCCTG)n Simple_repeat Simple_repeat 1 173 0 506 298 78 19 chr1 15529894 15530099 -266663565 - MIR SINE MIR -37 225 9 267 319 58 0 chr1 15530458 15530596 -266663068 + MIR SINE MIR 24 169 -93 201 74 0 0 chr1 15530666 15530693 -266662971 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1988 142 0 6 chr1 15531051 15531362 -266662302 + AluJb SINE Alu 1 309 -3 182 194 28 0 chr1 15531501 15531537 -266662127 - L2 LINE L2 -12 3301 3265 184 208 21 62 chr1 15531878 15531926 -266661738 - L2 LINE L2 -11 3302 3257 557 288 82 23 chr1 15532206 15532425 -266661239 - MIR SINE MIR -3 259 28 518 137 51 51 chr1 15532664 15532781 -266660883 - L1MA5A LINE L1 0 6297 6181 392 317 31 50 chr1 15533107 15533268 -266660396 - MIR3 SINE MIR -6 202 45 2021 136 0 10 chr1 15533571 15533879 -266659785 + AluSx SINE Alu 7 311 -1 2151 108 0 34 chr1 15534020 15534343 -266659321 - AluSx SINE Alu 0 312 1 2375 93 3 0 chr1 15534406 15534718 -266658946 - AluSp SINE Alu 0 313 1 581 218 75 0 chr1 15534927 15535074 -266658590 + MIR SINE MIR 65 222 -40 197 149 106 21 chr1 15535374 15535421 -266658243 + L2 LINE L2 3184 3234 -79 320 283 19 0 chr1 15535476 15535582 -266658082 - L2 LINE L2 -207 3106 2999 336 284 142 26 chr1 15535585 15535775 -266657889 - MIR SINE MIR -22 240 29 320 338 44 19 chr1 15536378 15536538 -266657126 - MIR SINE MIR -10 252 89 237 282 13 13 chr1 15536621 15536699 -266656965 - MIR SINE MIR -179 83 6 2031 51 4 4 chr1 15536713 15536967 -266656697 - AluY SINE Alu 0 311 58 1521 152 83 7 chr1 15537548 15537838 -266655826 + AluJb SINE Alu 1 312 0 279 312 65 12 chr1 15537851 15538021 -266655643 + L1ME4a LINE L1 5943 6121 0 193 293 104 0 chr1 15538098 15538204 -266655460 + MIR3 SINE MIR 9 125 -83 390 301 9 0 chr1 15538378 15538491 -266655173 + MIR SINE MIR 37 150 -112 2067 158 50 60 chr1 15538500 15538678 -266654986 - Tigger2a DNA MER2_type -2275 433 255 1874 153 49 25 chr1 15538678 15539044 -266654620 - THE1C LTR MaLR 0 375 1 2067 158 50 60 chr1 15539044 15539097 -266654567 - Tigger2a DNA MER2_type -2453 255 203 2179 118 0 6 chr1 15539097 15539411 -266654253 + AluSx SINE Alu 1 312 0 2067 158 50 60 chr1 15539411 15539615 -266654049 - Tigger2a DNA MER2_type -2505 203 1 1896 153 0 0 chr1 15540570 15540865 -266652799 + AluSx SINE Alu 1 295 -17 255 61 0 0 chr1 15541494 15541527 -266652137 + (TG)n Simple_repeat Simple_repeat 2 34 0 539 211 9 0 chr1 15541999 15542108 -266651556 - L1MB7 LINE L1 -69 6115 6006 747 187 56 45 chr1 15542448 15542646 -266651018 - MER20 DNA MER1_type -17 202 3 412 256 0 80 chr1 15542693 15542823 -266650841 + MIR SINE MIR 32 152 -110 1959 98 22 4 chr1 15542823 15543098 -266650566 + AluSx SINE Alu 1 280 -32 717 135 10 73 chr1 15543105 15543297 -266650367 + (AGTAG)n Simple_repeat Simple_repeat 1 180 0 346 269 37 19 chr1 15543433 15543541 -266650123 + MIR SINE MIR 32 141 -67 453 252 26 33 chr1 15544668 15544819 -266648845 - MIR SINE MIR -82 180 31 356 273 8 25 chr1 15544886 15545007 -266648657 - MIR SINE MIR -107 155 37 261 83 0 0 chr1 15545211 15545247 -266648417 + (TG)n Simple_repeat Simple_repeat 1 36 0 2857 90 0 6 chr1 15545247 15545612 -266648052 - THE1B LTR MaLR -1 363 1 422 187 11 0 chr1 15545623 15545714 -266647950 + (TG)n Simple_repeat Simple_repeat 1 92 0 192 333 35 23 chr1 15546550 15546637 -266647027 - L2 LINE L2 -1 3271 3184 211 299 15 15 chr1 15546751 15546818 -266646846 + MIR SINE MIR 84 150 -112 615 271 8 0 chr1 15547002 15547135 -266646529 - MIR3 SINE MIR -3 205 72 1975 117 0 7 chr1 15547481 15547763 -266645901 + AluSx SINE Alu 33 312 0 2198 92 20 0 chr1 15548276 15548570 -266645094 + AluSx SINE Alu 1 300 -12 341 319 35 9 chr1 15548680 15548796 -266644868 + MIR SINE MIR 37 155 -107 447 267 14 27 chr1 15548863 15549009 -266644655 + MIR SINE MIR 31 174 -88 789 259 43 47 chr1 15549490 15549791 -266643873 - MLT1K LTR MaLR -78 510 211 369 227 85 156 chr1 15550246 15550525 -266643139 + MIR SINE MIR 7 262 0 186 189 0 0 chr1 15550526 15550563 -266643101 + (CAT)n Simple_repeat Simple_repeat 3 39 0 250 305 48 29 chr1 15550724 15550829 -266642835 - MIR3 SINE MIR -21 187 81 334 260 91 58 chr1 15551292 15551446 -266642218 - MIR SINE MIR -90 172 14 236 353 66 0 chr1 15551449 15551571 -266642093 + L2 LINE L2 3182 3311 -2 462 275 35 55 chr1 15551665 15551820 -266641844 - L2 LINE L2 -5 3308 3156 2021 131 0 10 chr1 15551820 15552126 -266641538 + AluSg SINE Alu 1 303 -7 462 275 35 55 chr1 15552126 15552170 -266641494 - L2 LINE L2 -157 3156 3113 893 134 0 15 chr1 15552184 15552318 -266641346 - FLAM_C SINE Alu -1 132 1 314 304 183 16 chr1 15552605 15552796 -266640868 - L2 LINE L2 -661 2653 2431 328 286 0 0 chr1 15553118 15553195 -266640469 + MIR3 SINE MIR 95 171 -37 443 325 141 50 chr1 15554187 15554464 -266639200 + L1M4 LINE L1 4133 4434 -1712 1970 147 0 22 chr1 15554581 15554900 -266638764 - AluSq SINE Alu 0 313 2 297 260 21 21 chr1 15557362 15557458 -266636206 - MER5A DNA MER1_type -23 166 71 2221 101 13 0 chr1 15558101 15558409 -266635255 - AluSx SINE Alu 0 312 1 311 263 0 30 chr1 15558909 15559008 -266634656 + (CGTG)n Simple_repeat Simple_repeat 4 99 0 202 88 0 88 chr1 15559185 15559242 -266634422 + (TTTTTG)n Simple_repeat Simple_repeat 2 53 0 27 62 0 0 chr1 15561184 15561232 -266632432 + AT_rich Low_complexity Low_complexity 1 48 0 228 239 30 15 chr1 15562141 15562208 -266631456 - MER5B DNA MER1_type -110 68 1 469 251 30 18 chr1 15562243 15562410 -266631254 - MER117 DNA MER1_type -26 171 3 922 88 0 22 chr1 15562601 15562737 -266630927 + AluY SINE Alu 175 307 -4 426 287 70 0 chr1 15562808 15562937 -266630727 + MER91C DNA MER1_type 1 138 -2 614 299 185 0 chr1 15563000 15563211 -266630453 - MIR SINE MIR 0 262 13 1092 110 0 0 chr1 15563767 15563921 -266629743 + AluJb SINE Alu 128 281 -31 21 36 0 0 chr1 15563921 15563949 -266629715 + AT_rich Low_complexity Low_complexity 1 28 0 2190 121 0 9 chr1 15564321 15564636 -266629028 - AluSx SINE Alu 0 312 1 362 285 62 21 chr1 15565138 15565282 -266628382 + MIR SINE MIR 45 194 -68 961 266 34 0 chr1 15565648 15565885 -266627779 - MIR SINE MIR -12 250 6 264 320 33 40 chr1 15566297 15566423 -266627241 + MER5A DNA MER1_type 1 146 -43 253 321 0 28 chr1 15566724 15566830 -266626834 - MIR SINE MIR -138 124 22 216 330 44 22 chr1 15567119 15567210 -266626454 + MIR SINE MIR 49 141 -67 586 318 30 0 chr1 15567788 15567989 -266625675 + MIR SINE MIR 16 222 -40 343 280 30 0 chr1 15568046 15568146 -266625518 - MIR SINE MIR -70 192 90 336 275 154 7 chr1 15568183 15568332 -266625332 - MIR3 SINE MIR -15 193 23 489 250 38 25 chr1 15568373 15568533 -266625131 - MER103 DNA DNA -3 163 2 356 306 175 1 chr1 15569437 15569601 -266624063 + MIR SINE MIR 7 197 -62 229 238 0 32 chr1 15569707 15569770 -266623894 + MIR SINE MIR 84 144 -118 472 301 137 0 chr1 15570026 15570245 -266623419 - MER102a DNA MER1_type -5 325 77 220 211 58 0 chr1 15570964 15571016 -266622648 - L2 LINE L2 -17 3255 3201 273 325 0 0 chr1 15571019 15571102 -266622562 - L2 LINE L2 0 3272 3190 185 333 0 43 chr1 15571152 15571215 -266622449 - MIR SINE MIR -74 134 75 2018 121 35 0 chr1 15571215 15571505 -266622159 + AluSx SINE Alu 2 301 -11 185 333 0 43 chr1 15571505 15571534 -266622130 - MIR SINE MIR -133 75 46 560 186 53 0 chr1 15573969 15574082 -266619582 + MER20 DNA MER1_type 101 219 0 198 118 0 0 chr1 15574211 15574245 -266619419 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 601 202 120 66 chr1 15574284 15574467 -266619197 - MER63A DNA MER1_type 0 210 18 284 323 113 57 chr1 15574472 15574643 -266619021 - L2 LINE L2 -45 3227 3067 237 33 0 0 chr1 15574643 15574673 -266618991 + (TG)n Simple_repeat Simple_repeat 2 31 0 284 323 113 57 chr1 15574673 15575160 -266618504 - L2 LINE L2 -205 3067 2542 21 71 0 0 chr1 15575556 15575598 -266618066 + AT_rich Low_complexity Low_complexity 1 42 0 1747 119 12 0 chr1 15575765 15576017 -266617647 - AluSx SINE Alu -3 309 55 196 311 33 0 chr1 15576017 15576078 -266617586 - MER5A DNA MER1_type -118 71 9 212 241 0 0 chr1 15576738 15576796 -266616868 + (TCTCTG)n Simple_repeat Simple_repeat 1 58 0 357 242 60 103 chr1 15577447 15577699 -266615965 + L1MEd LINE L1 269 509 -5863 622 231 128 88 chr1 15577819 15578287 -266615377 + L1MEd LINE L1 849 1335 -5037 703 170 4 145 chr1 15578291 15578408 -266615256 - MER3 DNA MER1_type -6 203 134 2123 115 0 0 chr1 15578408 15578703 -266614961 - AluSx SINE Alu -11 301 7 703 170 4 145 chr1 15578703 15578820 -266614844 - MER3 DNA MER1_type -75 134 2 361 304 81 39 chr1 15578820 15579063 -266614601 + L1MEd LINE L1 1265 1496 -4886 2294 66 3 0 chr1 15579063 15579352 -266614312 - AluSq SINE Alu -23 290 1 361 304 81 39 chr1 15579352 15579703 -266613961 + L1MEd LINE L1 1496 1938 -4444 22 0 0 0 chr1 15579827 15579849 -266613815 + AT_rich Low_complexity Low_complexity 1 22 0 1007 204 22 0 chr1 15579943 15580124 -266613540 - MER5A DNA MER1_type -2 187 3 1391 171 43 37 chr1 15580238 15580474 -266613190 - MER33 DNA MER1_type -2261 324 84 2015 105 34 7 chr1 15580474 15580768 -266612896 - AluSx SINE Alu -10 302 1 1391 171 43 37 chr1 15580768 15580853 -266612811 - MER33 DNA MER1_type -2501 84 1 625 360 5 6 chr1 15580903 15581120 -266612544 - MIR SINE MIR -15 247 32 903 152 58 18 chr1 15581200 15581371 -266612293 - MER58A DNA MER1_type -45 179 2 204 167 0 0 chr1 15582047 15582095 -266611569 + (CA)n Simple_repeat Simple_repeat 1 48 0 424 315 48 48 chr1 15582811 15583141 -266610523 - MER65A LTR ERV1 -115 330 1 279 226 0 0 chr1 15583184 15583237 -266610427 - MIR SINE MIR -93 169 117 188 147 0 0 chr1 15583920 15583954 -266609710 - MIR SINE MIR -123 139 106 203 250 0 0 chr1 15584174 15584230 -266609434 + (CA)n Simple_repeat Simple_repeat 1 56 0 1998 117 19 19 chr1 15584417 15584725 -266608939 - AluY SINE Alu -3 308 1 240 190 116 33 chr1 15584887 15585008 -266608656 - L1ME4a LINE L1 -6 6115 5985 2415 64 6 6 chr1 15585143 15585456 -266608208 - AluSp SINE Alu 0 313 1 336 64 0 0 chr1 15585525 15585572 -266608092 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 1687 161 0 11 chr1 15585576 15585856 -266607808 - AluSx SINE Alu -35 277 1 392 297 89 1 chr1 15586069 15586268 -266607396 + L1MC4a LINE L1 5638 5812 -309 503 202 156 18 chr1 15586412 15586661 -266607003 - MER4C LTR ERV1 0 610 157 1673 126 75 36 chr1 15586674 15587007 -266606657 - MER4A LTR ERV1 -318 346 1 1583 176 44 78 chr1 15589618 15590005 -266603659 - MLT1A2 LTR MaLR 0 374 1 182 257 50 69 chr1 15590166 15590267 -266603397 + MIR3 SINE MIR 104 202 -6 196 223 58 16 chr1 15590439 15590516 -266603148 + MIR SINE MIR 82 142 -66 2025 127 3 0 chr1 15590618 15590909 -266602755 + AluSq SINE Alu 1 292 -21 506 290 119 0 chr1 15591043 15591219 -266602445 - MIR SINE MIR -7 255 59 241 309 81 65 chr1 15591963 15592209 -266601455 - L2 LINE L2 -57 3215 2966 226 291 128 50 chr1 15592317 15592496 -266601168 - L2 LINE L2 -3 3310 3118 473 283 69 26 chr1 15592712 15592945 -266600719 - L2 LINE L2 -494 2820 2578 528 187 7 13 chr1 15594242 15594397 -266599267 + CT-rich Low_complexity Low_complexity 1 154 0 383 207 29 0 chr1 15594928 15595068 -266598596 + (TCCA)n Simple_repeat Simple_repeat 3 146 0 24 0 0 0 chr1 15595288 15595312 -266598352 + AT_rich Low_complexity Low_complexity 1 24 0 205 316 60 45 chr1 15595364 15595497 -266598167 - L2 LINE L2 -213 3059 2925 201 291 76 13 chr1 15595823 15595902 -266597762 + MIR SINE MIR 20 103 -105 1880 108 0 28 chr1 15596060 15596348 -266597316 + AluSg SINE Alu 1 280 -30 290 255 21 21 chr1 15597392 15597486 -266596178 - MIR SINE MIR -104 158 65 359 331 44 0 chr1 15597870 15598006 -266595658 - MIR SINE MIR -62 200 59 2533 234 6 28 chr1 15598006 15598689 -266594975 - L1M4 LINE L1 -2261 3885 3218 247 292 0 0 chr1 15598754 15598819 -266594845 - MIR3 SINE MIR -33 175 111 297 322 56 39 chr1 15598891 15599071 -266594593 + MER5A DNA MER1_type 6 188 -1 1850 175 3 7 chr1 15599079 15599387 -266594277 + AluJo SINE Alu 1 307 -5 234 137 59 20 chr1 15600139 15600190 -266593474 - MIR SINE MIR -138 70 18 741 271 13 38 chr1 15600530 15600766 -266592898 + MIR SINE MIR 30 259 -3 425 302 0 62 chr1 15600837 15601029 -266592635 + MIR SINE MIR 49 228 -34 328 339 52 6 chr1 15601478 15601652 -266592012 + MIR SINE MIR 58 239 -23 1810 147 57 0 chr1 15602184 15602463 -266591201 + AluJb SINE Alu 1 295 -17 289 276 41 0 chr1 15602483 15602581 -266591083 - MIR SINE MIR -62 146 45 672 209 0 0 chr1 15602661 15602838 -266590826 + (TG)n Simple_repeat Simple_repeat 2 178 0 792 186 4 4 chr1 15602869 15603647 -266590017 + (TG)n Simple_repeat Simple_repeat 1 778 0 246 261 15 0 chr1 15603647 15603712 -266589952 - MIR SINE MIR -62 200 135 307 321 28 9 chr1 15603829 15603952 -266589712 + MIR3 SINE MIR 29 155 -53 293 0 0 26 chr1 15604341 15604379 -266589285 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1835 102 8 42 chr1 15604395 15604659 -266589005 - AluSx SINE Alu -57 255 1 1028 208 0 32 chr1 15604757 15604978 -266588686 - MER58A DNA MER1_type -9 215 2 470 293 113 9 chr1 15605158 15605380 -266588284 + MIR SINE MIR 1 245 -17 405 0 0 0 chr1 15605411 15605456 -266588208 + (TG)n Simple_repeat Simple_repeat 2 46 0 285 310 43 48 chr1 15605844 15606031 -266587633 + MER5A DNA MER1_type 4 189 0 609 203 31 126 chr1 15606293 15606554 -266587110 + MER106B DNA MER1_type 1 1059 0 760 248 24 67 chr1 15606667 15606749 -266586915 - MIR SINE MIR 0 262 178 1479 98 39 0 chr1 15606749 15606952 -266586712 - AluSg/x SINE Alu -18 294 84 760 248 24 67 chr1 15606952 15607123 -266586541 - MIR SINE MIR -84 178 20 201 182 239 0 chr1 15607381 15607469 -266586195 - MIR SINE MIR -79 183 75 292 279 93 16 chr1 15608788 15608917 -266584747 + MIR SINE MIR 67 205 -57 417 304 68 19 chr1 15611150 15611311 -266582353 - MIR SINE MIR -62 200 32 296 253 81 0 chr1 15611699 15611786 -266581878 - MER5A DNA MER1_type -87 102 9 314 255 137 0 chr1 15612228 15612330 -266581334 - L2 LINE L2 -243 3070 2955 189 305 183 0 chr1 15612335 15612417 -266581247 - L2 LINE L2 -43 3229 3133 1849 149 40 7 chr1 15612453 15612749 -266580915 - AluJo SINE Alu -6 306 1 210 222 37 0 chr1 15612869 15612923 -266580741 - L2 LINE L2 -338 2975 2920 211 286 184 7 chr1 15613660 15613807 -266579857 - MIR SINE MIR -44 218 46 967 209 14 24 chr1 15614214 15614425 -266579239 - MER3 DNA MER1_type 0 209 1 698 147 0 0 chr1 15614581 15614690 -266578974 + MSTB LTR MaLR 1 109 -319 818 60 0 0 chr1 15614690 15614790 -266578874 - AluY SINE Alu 0 311 212 1267 168 37 144 chr1 15614790 15615164 -266578500 + MSTB LTR MaLR 93 426 0 677 306 52 41 chr1 15615174 15615517 -266578147 - MLT1K LTR MaLR -28 560 214 960 131 0 14 chr1 15615942 15616087 -266577577 - FLAM_C SINE Alu 0 143 1 822 186 0 14 chr1 15616097 15616242 -266577422 - MER20 DNA MER1_type -74 145 3 523 276 56 20 chr1 15616243 15616439 -266577225 - MIR SINE MIR -54 208 6 2209 116 0 0 chr1 15616763 15617055 -266576609 - AluSx SINE Alu 0 312 21 241 203 104 38 chr1 15617238 15617369 -266576295 + MIR SINE MIR 34 187 -21 1644 201 60 5 chr1 15618204 15618572 -266575092 - MLT1B LTR MaLR 0 390 3 1543 148 45 36 chr1 15618857 15619388 -266574276 + LTR36 LTR ERV1 2 611 0 225 218 18 36 chr1 15619762 15619817 -266573847 - L2 LINE L2 0 3272 3219 2377 90 0 10 chr1 15620637 15620938 -266572726 - AluSx SINE Alu -14 298 1 471 258 138 6 chr1 15621160 15621327 -266572337 - MIR SINE MIR -26 236 48 400 275 63 14 chr1 15621336 15621456 -266572208 - L3 LINE CR1 -544 1033 907 268 325 35 35 chr1 15621456 15621570 -266572094 + MER5B DNA MER1_type 3 116 -62 213 276 82 20 chr1 15621586 15621684 -266571980 - MER5A DNA MER1_type -47 142 39 1414 199 67 103 chr1 15622538 15623060 -266570604 + MLT1D LTR MaLR 3 505 0 1499 171 142 67 chr1 15623152 15623526 -266570138 - MER93a LTR ERV1 0 402 1 512 200 0 0 chr1 15623553 15623638 -266570026 + AluJ/FLAM SINE Alu 2 86 -226 1246 218 115 91 chr1 15623719 15623908 -266569756 + MLT1F1 LTR MaLR 7 190 -377 243 0 0 0 chr1 15623908 15623935 -266569729 + (TG)n Simple_repeat Simple_repeat 2 28 0 1246 218 115 91 chr1 15623935 15624275 -266569389 + MLT1F1 LTR MaLR 190 565 -2 690 248 6 12 chr1 15624444 15624605 -266569059 - MIR SINE MIR 0 262 103 809 154 0 0 chr1 15624638 15624761 -266568903 - FLAM_A SINE Alu -10 123 1 2268 113 7 0 chr1 15625221 15625514 -266568150 - AluSx SINE Alu -15 297 3 441 0 0 0 chr1 15625616 15625665 -266567999 + (CA)n Simple_repeat Simple_repeat 2 50 0 657 145 34 0 chr1 15625666 15625783 -266567881 - FLAM_C SINE Alu -21 122 2 193 266 25 25 chr1 15626347 15626426 -266567238 - MER5A DNA MER1_type 0 189 111 2490 102 19 8 chr1 15626454 15626825 -266566839 + THE1C LTR MaLR 1 375 0 353 282 94 40 chr1 15626835 15626984 -266566680 - MER5B DNA MER1_type -21 157 1 211 244 0 0 chr1 15627121 15627166 -266566498 + (TTA)n Simple_repeat Simple_repeat 2 46 0 634 293 78 23 chr1 15627254 15627510 -266566154 + MLT1K LTR MaLR 181 450 -138 567 237 37 32 chr1 15627517 15627707 -266565957 - L2 LINE L2 -349 2965 2775 2292 97 0 17 chr1 15627707 15628007 -266565657 - AluSx SINE Alu -17 295 1 1185 150 38 0 chr1 15628057 15628270 -266565394 + L1PA16 LINE L1 5946 6166 0 7706 78 14 3 chr1 15628419 15629378 -266564286 - LTR5 LTR ERVK 0 969 1 489 284 60 0 chr1 15629385 15629519 -266564145 + MIR3 SINE MIR 32 173 -35 2118 121 0 0 chr1 15629635 15629939 -266563725 - AluSx SINE Alu 0 308 5 1996 247 17 19 chr1 15630148 15630612 -266563052 + L1ME3 LINE L1 5633 6097 -65 2349 107 0 0 chr1 15630612 15630910 -266562754 + AluSq SINE Alu 1 298 -15 1996 247 17 19 chr1 15630910 15630976 -266562688 + L1ME3 LINE L1 6097 6162 0 300 154 0 0 chr1 15631602 15631654 -266562010 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 1395 115 0 0 chr1 15631654 15631836 -266561828 - AluSg/x SINE Alu -19 293 112 1382 86 11 0 chr1 15631835 15632009 -266561655 - AluSq SINE Alu -137 176 1 * 613 253 13 0 chr1 15632080 15632234 -266561430 - MIR SINE MIR -99 163 8 2399 116 7 0 chr1 15632418 15632769 -266560895 + AluSx SINE Alu 1 353 0 227 265 31 41 chr1 15633701 15633799 -266559865 + MIR SINE MIR 48 144 -118 2277 105 3 0 chr1 15634454 15634750 -266558914 + AluSg SINE Alu 1 297 -13 405 284 142 42 chr1 15634765 15635026 -266558638 - MER102b DNA MER1_type -51 290 4 962 224 46 25 chr1 15635425 15635666 -266557998 - L1MD2 LINE L1 -12 6347 6102 1510 172 71 88 chr1 15635669 15635754 -266557910 - L1MD2 LINE L1 -203 6156 6071 2204 117 0 23 chr1 15635754 15636062 -266557602 + AluSx SINE Alu 1 301 -11 1510 172 71 88 chr1 15636062 15636078 -266557586 - L1MD2 LINE L1 -288 6071 6056 5195 88 10 19 chr1 15636078 15636887 -266556777 + L1MA3 LINE L1 5504 6305 0 1510 172 71 88 chr1 15636887 15637124 -266556540 - L1MD2 LINE L1 -303 6056 5824 2002 143 0 13 chr1 15637124 15637431 -266556233 - AluSx SINE Alu -9 303 1 1510 172 71 88 chr1 15637431 15637543 -266556121 - L1MD2 LINE L1 -535 5824 5712 442 252 0 10 chr1 15637716 15637819 -266555845 - L2 LINE L2 -5 3308 3207 417 342 0 0 chr1 15637827 15637944 -266555720 - MIR SINE MIR -62 146 30 1848 155 10 3 chr1 15638066 15638357 -266555307 - AluJb SINE Alu -19 293 1 950 184 43 19 chr1 15638366 15638573 -266555091 + MER20 DNA MER1_type 7 218 -1 606 258 94 30 chr1 15640047 15640295 -266553369 + MIR SINE MIR 5 262 0 1373 163 0 23 chr1 15640578 15640799 -266552865 + AluJo SINE Alu 6 221 -91 381 227 189 0 chr1 15640993 15641125 -266552539 + MLT1L LTR MaLR 133 289 -326 1782 170 0 30 chr1 15641891 15642191 -266551473 + AluJo SINE Alu 1 291 -21 2134 107 27 10 chr1 15642507 15642806 -266550858 + AluSx SINE Alu 1 304 -8 431 319 40 28 chr1 15642834 15643085 -266550579 - L1MC4a LINE L1 -1923 5885 5632 438 285 22 95 chr1 15643325 15643504 -266550160 - MIR SINE MIR -48 214 49 1956 173 58 78 chr1 15643647 15644162 -266549502 - MLT1D LTR MaLR 0 505 1 500 304 110 0 chr1 15644174 15644365 -266549299 + MIR SINE MIR 7 218 -44 209 188 21 21 chr1 15644960 15645008 -266548656 - L2 LINE L2 -1 3312 3265 499 305 57 24 chr1 15645070 15645280 -266548384 + MIR SINE MIR 21 237 -25 201 243 0 0 chr1 15646471 15646508 -266547156 + (CACG)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr1 15647211 15647235 -266546429 + GC_rich Low_complexity Low_complexity 1 24 0 348 116 227 0 chr1 15648443 15648520 -266545144 + MIR SINE MIR 70 171 -37 236 244 37 0 chr1 15648668 15648750 -266544914 - L2 LINE L2 -283 2989 2905 329 250 43 33 chr1 15648852 15648944 -266544720 - L2 LINE L2 -6 3307 3215 202 351 0 0 chr1 15648957 15649014 -266544650 - L2 LINE L2 -576 2738 2682 576 209 72 7 chr1 15649756 15649909 -266543755 - MIR3 SINE MIR -11 197 35 367 304 152 0 chr1 15650442 15650580 -266543084 - MIR3 SINE MIR -10 198 40 767 153 0 0 chr1 15651056 15651174 -266542490 - FLAM_C SINE Alu -15 118 1 409 290 75 11 chr1 15651891 15652077 -266541587 - MER112 DNA MER1_type -29 231 34 2126 87 0 0 chr1 15652629 15652893 -266540771 - AluSc SINE Alu -2 307 44 2393 117 0 0 chr1 15653347 15653654 -266540010 - AluSx SINE Alu -4 308 2 291 323 61 24 chr1 15654033 15654197 -266539467 - L2 LINE L2 -191 3081 2912 2068 131 10 0 chr1 15654306 15654597 -266539067 + AluSx SINE Alu 1 294 -18 3286 142 20 12 chr1 15654603 15654666 -266538998 + L1MB3 LINE L1 5587 5648 -535 1110 159 269 45 chr1 15654666 15654738 -266538926 - MSTB1 LTR MaLR 0 432 377 2256 80 28 0 chr1 15654738 15655024 -266538640 + AluSc SINE Alu 1 294 -15 1110 159 269 45 chr1 15655024 15655248 -266538416 - MSTB1 LTR MaLR -55 377 204 2164 125 10 0 chr1 15655248 15655543 -266538121 - AluSx SINE Alu -14 298 1 1110 159 269 45 chr1 15655543 15655598 -266538066 - MSTB1 LTR MaLR -228 204 1 3286 142 20 12 chr1 15655598 15656124 -266537540 + L1MB3 LINE L1 5648 6181 -2 357 270 22 113 chr1 15656167 15656352 -266537312 - L2 LINE L2 -6 3307 3140 335 228 119 40 chr1 15656644 15656745 -266536919 + L1ME4a LINE L1 5628 5736 -385 2684 172 21 71 chr1 15656791 15656930 -266536734 - L1MD3 LINE L1 -2 7993 7849 2331 82 0 4 chr1 15656930 15657211 -266536453 - AluSx SINE Alu -32 280 1 2684 172 21 71 chr1 15657211 15657680 -266535984 - L1MD3 LINE L1 -146 7849 7415 304 290 85 80 chr1 15657707 15657873 -266535791 + L1ME4a LINE L1 5109 5278 -868 2603 78 0 0 chr1 15657873 15658182 -266535482 - AluSc SINE Alu 0 309 1 304 290 85 80 chr1 15658182 15658239 -266535425 + L1ME4a LINE L1 5278 5333 -813 745 214 65 0 chr1 15658251 15658405 -266535259 + AluJb SINE Alu 137 300 -12 26 30 0 0 chr1 15658517 15658550 -266535114 + AT_rich Low_complexity Low_complexity 1 33 0 318 361 64 5 chr1 15658691 15658910 -266534754 + L1ME4a LINE L1 5631 5862 -259 588 107 24 0 chr1 15658942 15659026 -266534638 + AluSg/x SINE Alu 204 289 -21 310 271 124 38 chr1 15659031 15659241 -266534423 + L1ME4a LINE L1 5888 6115 -6 2160 133 7 0 chr1 15659520 15659821 -266533843 + AluSx SINE Alu 1 303 -9 2032 203 74 25 chr1 15659835 15660127 -266533537 - L1ME1 LINE L1 -15 6151 5875 2701 51 0 0 chr1 15660127 15660438 -266533226 + AluY SINE Alu 1 311 0 2032 203 74 25 chr1 15660438 15660696 -266532968 - L1ME1 LINE L1 -291 5875 5574 357 262 71 76 chr1 15660992 15661202 -266532462 - HAL1 LINE L1 0 2507 2299 210 244 0 0 chr1 15661429 15661470 -266532194 + polypurine Low_complexity Low_complexity 3 43 0 274 98 0 59 chr1 15662137 15662188 -266531476 - MLT1J1 LTR MaLR -113 333 286 265 176 0 0 chr1 15662233 15662284 -266531380 - MIR SINE MIR -171 91 41 239 309 154 45 chr1 15662726 15663063 -266530601 + L1ME4a LINE L1 5731 6104 -17 1673 113 169 15 chr1 15663428 15663694 -266529970 - AluSx SINE Alu -5 307 1 651 144 0 9 chr1 15663695 15663806 -266529858 - L1MB4 LINE L1 -40 6140 6031 2172 55 0 0 chr1 15663816 15664069 -266529595 - AluY SINE Alu -18 293 41 733 154 9 154 chr1 15664098 15664318 -266529346 - MER5A DNA MER1_type -1 188 1 355 268 65 16 chr1 15664366 15664489 -266529175 - MLT2E LTR ERVL -12 616 488 1465 220 94 3 chr1 15664522 15664863 -266528801 - MLT2E LTR ERVL -256 372 1 477 253 40 27 chr1 15665001 15665151 -266528513 + MER5A DNA MER1_type 38 189 0 2053 135 0 35 chr1 15665178 15665490 -266528174 + AluJb SINE Alu 3 303 -9 252 207 23 23 chr1 15665490 15665577 -266528087 + GA-rich Low_complexity Low_complexity 1 87 0 406 254 9 18 chr1 15665607 15665719 -266527945 + MIR SINE MIR 15 121 -87 1425 226 0 0 chr1 15665729 15665994 -266527670 + Tigger7 DNA MER2_type 1 265 -468 449 151 0 0 chr1 15666009 15666082 -266527582 + Tigger7 DNA MER2_type 2501 2573 -14 2587 71 3 3 chr1 15666293 15666602 -266527062 - AluSq SINE Alu -4 309 1 1661 191 17 7 chr1 15667326 15667624 -266526040 - AluJo SINE Alu -11 301 1 1479 168 75 46 chr1 15667723 15668069 -266525595 - MLT1A2 LTR MaLR -11 363 8 2342 122 0 0 chr1 15668199 15668511 -266525153 + AluSq SINE Alu 1 312 -1 614 296 178 15 chr1 15668580 15668614 -266525050 + L2 LINE L2 2921 2948 -365 2337 108 22 11 chr1 15668614 15668974 -266524690 - THE1B LTR MaLR 0 364 1 614 296 178 15 chr1 15668974 15669277 -266524387 + L2 LINE L2 2948 3313 0 183 267 12 93 chr1 15669728 15669814 -266523850 + L2 LINE L2 3229 3307 -6 452 273 181 42 chr1 15670150 15670388 -266523276 - Charlie8 DNA MER1_type -2142 275 5 198 0 0 0 chr1 15670770 15670792 -266522872 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 430 277 73 7 chr1 15671463 15671600 -266522064 - MER5A DNA MER1_type -4 185 40 377 235 12 0 chr1 15671714 15671799 -266521865 - MIR SINE MIR -96 166 81 1093 234 105 72 chr1 15672254 15672583 -266521081 + L1ME2 LINE L1 5594 5950 -214 1992 144 10 3 chr1 15672583 15672882 -266520782 + AluJb SINE Alu 1 301 -11 1093 234 105 72 chr1 15672882 15673095 -266520569 + L1ME2 LINE L1 5950 6154 -10 207 268 49 41 chr1 15673108 15673231 -266520433 - MER5A DNA MER1_type -49 140 17 282 325 17 26 chr1 15673699 15673816 -266519848 + MIR SINE MIR 56 171 -91 651 262 82 0 chr1 15673853 15674036 -266519628 - MIR SINE MIR -64 198 1 656 294 22 0 chr1 15674174 15674358 -266519306 + MIR SINE MIR 75 262 0 2203 110 0 3 chr1 15674961 15675289 -266518375 + AluSp SINE Alu 3 329 0 478 248 44 22 chr1 15675338 15675475 -266518189 + MIR SINE MIR 48 187 -75 427 248 16 7 chr1 15675555 15675689 -266517975 + MIR SINE MIR 52 146 -62 2025 145 0 14 chr1 15675847 15676144 -266517520 - AluSx SINE Alu -19 293 1 405 258 62 113 chr1 15676417 15676692 -266516972 + MIR SINE MIR 2 262 0 198 204 23 0 chr1 15677039 15677083 -266516581 - MER5A DNA MER1_type -84 105 61 270 136 0 0 chr1 15677083 15677127 -266516537 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 2070 91 54 0 chr1 15677130 15677406 -266516258 - AluSc SINE Alu -18 291 1 185 208 151 0 chr1 15677407 15677460 -266516204 - MER5A DNA MER1_type -120 69 9 * 662 327 92 6 chr1 15677455 15677801 -266515863 - L2 LINE L2 -446 2868 2493 1034 183 39 10 chr1 15677872 15678080 -266515584 + MER20 DNA MER1_type 6 219 0 322 245 11 43 chr1 15678460 15678554 -266515110 - MIR3 SINE MIR -3 205 115 231 262 136 19 chr1 15679621 15679724 -266513940 + MIR SINE MIR 92 206 -56 250 303 122 25 chr1 15679731 15679969 -266513695 - L2 LINE L2 -475 2839 2579 529 258 177 39 chr1 15681156 15681489 -266512175 - MLT1K LTR MaLR -73 515 137 1965 121 3 52 chr1 15682132 15682437 -266511227 - AluSx SINE Alu -22 290 1 349 344 26 0 chr1 15683227 15683378 -266510286 + MIR SINE MIR 13 167 -95 1814 181 66 97 chr1 15683650 15683857 -266509807 + MLT1D LTR MaLR 1 213 -292 2297 113 0 0 chr1 15683857 15684168 -266509496 - AluY SINE Alu 0 311 1 1814 181 66 97 chr1 15684168 15684463 -266509201 + MLT1D LTR MaLR 213 487 -18 258 343 10 0 chr1 15684613 15684712 -266508952 - MIR SINE MIR -99 163 64 2333 101 3 7 chr1 15685524 15685832 -266507832 - AluSg1 SINE Alu -2 307 1 2170 83 87 14 chr1 15686649 15686938 -266506726 - AluSx SINE Alu -2 310 1 363 235 50 34 chr1 15687099 15687218 -266506446 - L2 LINE L2 0 3313 3193 745 192 91 19 chr1 15687225 15687433 -266506231 - Charlie5 DNA MER1_type -30 2582 2360 990 173 53 74 chr1 15687951 15687993 -266505671 - MER33 DNA MER1_type -2261 324 283 2069 131 3 31 chr1 15687993 15688313 -266505351 - AluJb SINE Alu -1 311 1 990 173 53 74 chr1 15688313 15688553 -266505111 - MER33 DNA MER1_type -2302 283 48 226 279 207 0 chr1 15688773 15688884 -266504780 - MIR SINE MIR -112 150 17 614 263 6 38 chr1 15689300 15689460 -266504204 - MER63A DNA MER1_type -2 208 54 279 79 0 0 chr1 15689460 15689498 -266504166 + (TG)n Simple_repeat Simple_repeat 1 38 0 620 224 0 0 chr1 15689618 15689734 -266503930 - FLAM_C SINE Alu -26 117 2 1043 262 191 10 chr1 15690048 15690457 -266503207 - MLT1K LTR MaLR -97 491 9 252 160 0 0 chr1 15690766 15690821 -266502843 - MIR SINE MIR -108 154 101 1507 239 69 50 chr1 15691011 15691489 -266502175 - MLT1J LTR MaLR -10 501 15 2336 92 0 3 chr1 15691507 15691799 -266501865 - AluSx SINE Alu -21 291 1 2293 100 0 7 chr1 15692217 15692516 -266501148 - AluSq SINE Alu -16 297 1 1972 163 5 33 chr1 15693104 15693270 -266500394 + MLT1B LTR MaLR 4 173 -217 1572 148 37 4 chr1 15693270 15693514 -266500150 + AluJb SINE Alu 56 307 -5 1972 163 5 33 chr1 15693514 15693745 -266499919 + MLT1B LTR MaLR 173 390 0 405 294 61 6 chr1 15694171 15694334 -266499330 + MIR SINE MIR 30 201 -61 313 178 6 86 chr1 15694390 15694553 -266499111 + A-rich Low_complexity Low_complexity 5 154 0 1789 222 81 21 chr1 15695440 15695909 -266497755 - MLT1D LTR MaLR -6 499 3 855 272 174 22 chr1 15696163 15696334 -266497330 + L2 LINE L2 2890 3034 -279 2341 81 0 29 chr1 15696334 15696642 -266497022 - AluSg SINE Alu -11 299 1 855 272 174 22 chr1 15696642 15696838 -266496826 + L2 LINE L2 3034 3313 0 326 283 76 28 chr1 15696876 15697021 -266496643 - MIR SINE MIR -89 173 22 2242 80 0 4 chr1 15697353 15697628 -266496036 + AluSx SINE Alu 1 274 -38 528 244 18 60 chr1 15697723 15697891 -266495773 + MIR SINE MIR 63 223 -39 429 327 204 0 chr1 15698655 15698866 -266494798 + MIR SINE MIR 2 255 -7 1822 159 27 3 chr1 15699044 15699339 -266494325 + AluJo SINE Alu 10 311 -1 204 125 0 0 chr1 15699341 15699373 -266494291 + (GGGAA)n Simple_repeat Simple_repeat 4 35 0 219 167 0 0 chr1 15699417 15699459 -266494205 + GA-rich Low_complexity Low_complexity 1 42 0 331 250 62 54 chr1 15699564 15699676 -266493988 + MIR SINE MIR 9 121 -141 548 279 56 78 chr1 15701080 15701399 -266492265 - L2 LINE L2 0 3313 3002 1645 119 0 37 chr1 15701421 15701664 -266492000 + AluJo SINE Alu 1 234 -78 32 43 0 0 chr1 15701688 15701734 -266491930 + AT_rich Low_complexity Low_complexity 1 46 0 395 286 46 38 chr1 15701735 15701988 -266491676 - L2 LINE L2 -280 2992 2731 1684 166 52 3 chr1 15702147 15702317 -266491347 - AluJo SINE Alu -8 304 113 357 24 0 0 chr1 15702317 15702359 -266491305 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1684 166 52 3 chr1 15702359 15702478 -266491186 - AluJo SINE Alu -199 113 1 289 250 11 0 chr1 15702559 15702647 -266491017 - L1ME3A LINE L1 -225 5945 5857 976 176 66 35 chr1 15702789 15703016 -266490648 - MER106A DNA MER1_type 0 236 3 1072 208 29 41 chr1 15703055 15703300 -266490364 - MIR SINE MIR -18 244 3 186 237 66 53 chr1 15703236 15703312 -266490352 + MIR SINE MIR 23 99 -109 * 336 262 223 19 chr1 15703626 15703832 -266489832 - L1ME3A LINE L1 -315 5806 5559 212 281 49 24 chr1 15704403 15704485 -266489179 + (CATG)n Simple_repeat Simple_repeat 1 84 0 342 277 0 12 chr1 15704762 15704845 -266488819 + L2 LINE L2 3231 3312 -1 2027 108 0 42 chr1 15705444 15705732 -266487932 - AluSc SINE Alu -19 290 15 217 147 0 0 chr1 15705736 15705770 -266487894 - L2 LINE L2 -14 3258 3225 622 48 0 114 chr1 15707288 15707340 -266486324 + L1PB2 LINE L1 5788 5824 -327 2301 105 0 16 chr1 15707340 15707653 -266486011 + AluSx SINE Alu 1 308 -4 622 48 0 114 chr1 15707653 15707705 -266485959 + L1PB2 LINE L1 5824 5880 -271 234 299 234 19 chr1 15707897 15708222 -266485442 + L1MC/D LINE L1 5255 5649 -2159 996 145 16 21 chr1 15708380 15708573 -266485091 + L1M1 LINE L1 5508 5699 -603 514 174 0 0 chr1 15708576 15708662 -266485002 + MER66A LTR ERV1 154 239 -239 337 174 122 71 chr1 15708738 15708766 -266484898 - L1ME4a LINE L1 -4 6117 6092 1714 193 129 50 chr1 15708766 15709248 -266484416 - MLT2B1 LTR ERVL 0 520 1 337 174 122 71 chr1 15709248 15709317 -266484347 - L1ME4a LINE L1 -29 6092 6015 269 290 109 13 chr1 15709737 15709885 -266483779 + MIR SINE MIR 3 157 -63 1481 180 58 98 chr1 15709917 15710411 -266483253 + MER66A LTR ERV1 97 473 -5 316 312 18 9 chr1 15710422 15710531 -266483133 + MIR SINE MIR 153 262 0 553 269 143 27 chr1 15711874 15712097 -266481567 - MIR SINE MIR 0 262 14 1488 220 122 28 chr1 15713055 15713514 -266480150 + MLT1D LTR MaLR 4 505 0 272 173 39 0 chr1 15713947 15713999 -266479665 + GA-rich Low_complexity Low_complexity 2 55 0 663 118 13 39 chr1 15714009 15714162 -266479502 + (GGGAA)n Simple_repeat Simple_repeat 4 152 0 2140 120 3 23 chr1 15714936 15715245 -266478419 - AluSq SINE Alu -10 303 1 367 233 97 19 chr1 15715481 15715584 -266478080 - L2 LINE L2 0 3313 3203 1950 142 25 0 chr1 15716368 15716650 -266477014 + AluSx SINE Alu 1 289 -23 585 161 0 28 chr1 15716650 15716793 -266476871 + G-rich Low_complexity Low_complexity 2 140 0 449 241 170 54 chr1 15717528 15717822 -266475842 - L2 LINE L2 -27 3286 2959 237 204 0 0 chr1 15717822 15717866 -266475798 + MER103 DNA DNA 77 120 -46 246 305 42 0 chr1 15717967 15718062 -266475602 - MIR3 SINE MIR -44 164 66 870 148 164 5 chr1 15718953 15719142 -266474522 + MER20 DNA MER1_type 1 219 0 2152 136 0 7 chr1 15719699 15720008 -266473656 - AluSx SINE Alu -2 310 4 2506 66 0 10 chr1 15720404 15720709 -266472955 + AluY SINE Alu 1 302 -9 2131 119 34 0 chr1 15720976 15721271 -266472393 + AluSx SINE Alu 1 305 -7 801 154 39 133 chr1 15721658 15721892 -266471772 - MER20 DNA MER1_type -2 217 6 659 223 52 85 chr1 15722247 15722497 -266471167 + L1MC5 LINE L1 6855 7085 -899 1975 166 3 0 chr1 15722497 15722798 -266470866 + AluJb SINE Alu 1 302 -10 659 223 52 85 chr1 15722798 15722960 -266470704 + L1MC5 LINE L1 7085 7251 -733 2144 140 0 0 chr1 15722960 15723260 -266470404 + AluSx SINE Alu 1 300 -12 2674 147 9 0 chr1 15723268 15723696 -266469968 + L1MB2 LINE L1 5738 6169 -2 2053 159 0 0 chr1 15723706 15724014 -266469650 + AluSx SINE Alu 3 310 -2 936 277 88 44 chr1 15724146 15724759 -266468905 + L1MC5 LINE L1 7260 7899 -62 3015 135 29 38 chr1 15724918 15725054 -266468610 - L1PA16 LINE L1 -1 6165 6029 2441 93 0 3 chr1 15725054 15725365 -266468299 - AluY SINE Alu -1 310 1 3015 135 29 38 chr1 15725365 15725776 -266467888 - L1PA16 LINE L1 -137 6029 5623 4384 171 71 23 chr1 15726147 15726658 -266467006 + L1PA16 LINE L1 461 946 -5203 183 42 0 0 chr1 15726658 15726682 -266466982 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4384 171 71 23 chr1 15726682 15727310 -266466354 + L1PA16 LINE L1 942 6139 -6 2311 100 10 0 chr1 15727310 15727610 -266466054 - AluSx SINE Alu -9 303 1 305 275 14 49 chr1 15727795 15727937 -266465727 - Charlie8 DNA MER1_type -2162 255 119 999 268 32 59 chr1 15727989 15728518 -266465146 + MLT1K LTR MaLR 5 551 -37 2725 99 8 0 chr1 15728519 15728891 -266464773 + THE1C LTR MaLR 1 375 0 247 368 11 28 chr1 15729024 15729206 -266464458 + L2 LINE L2 2885 3063 -209 2273 116 7 0 chr1 15729678 15729979 -266463685 + AluSg SINE Alu 1 303 -7 1814 167 3 3 chr1 15730634 15730916 -266462748 - AluJo SINE Alu -30 282 1 317 314 68 25 chr1 15730925 15731014 -266462650 - L2 LINE L2 0 3313 3216 2351 115 0 3 chr1 15731014 15731326 -266462338 + AluSx SINE Alu 1 311 -1 317 314 68 25 chr1 15731326 15731354 -266462310 - L2 LINE L2 -97 3216 3191 218 293 24 24 chr1 15731338 15731420 -266462244 + MER5A DNA MER1_type 62 143 -46 * 677 280 11 0 chr1 15731507 15731689 -266461975 + L1ME3A LINE L1 5508 5691 -479 1842 180 58 116 chr1 15731706 15732056 -266461608 + MLT1E LTR MaLR 44 413 -180 1860 169 10 16 chr1 15732056 15732370 -266461294 + AluJo SINE Alu 1 312 0 1842 180 58 116 chr1 15732370 15732386 -266461278 + MLT1E LTR MaLR 413 428 -165 2437 97 0 0 chr1 15732386 15732694 -266460970 + AluSg SINE Alu 1 308 -2 1842 180 58 116 chr1 15732694 15732910 -266460754 + MLT1E LTR MaLR 428 593 0 1187 188 18 98 chr1 15732910 15733082 -266460582 + L1ME3A LINE L1 5794 5929 -241 1755 142 36 4 chr1 15733082 15733395 -266460269 + AluSq SINE Alu 1 322 0 1187 188 18 98 chr1 15733395 15733557 -266460107 + L1ME3A LINE L1 5929 6102 -68 2443 77 0 0 chr1 15733662 15733962 -266459702 + AluSg SINE Alu 1 300 -10 438 310 16 12 chr1 15733968 15734113 -266459551 + MIR SINE MIR 20 162 -46 433 266 93 7 chr1 15734537 15734676 -266458988 - MIR SINE MIR 0 262 112 246 221 91 26 chr1 15735596 15735673 -266457991 + MIR SINE MIR 48 129 -133 532 164 0 113 chr1 15736375 15736534 -266457130 - L2 LINE L2 -43 3270 3130 2739 135 26 2 chr1 15736535 15736957 -266456707 - MSTB1 LTR MaLR 0 432 1 335 249 99 24 chr1 15736992 15737137 -266456527 - L1 LINE L1 -2944 3202 3048 343 267 60 9 chr1 15737157 15737273 -266456391 - L2 LINE L2 -276 3037 2916 404 289 20 47 chr1 15737448 15737597 -266456067 + MER5A DNA MER1_type 19 163 -26 1946 130 167 34 chr1 15737671 15738049 -266455615 - MSTA LTR MaLR 0 428 1 315 284 23 0 chr1 15738705 15738807 -266454857 + MIR SINE MIR 42 146 -62 296 198 86 37 chr1 15739882 15739963 -266453701 - L2 LINE L2 -1 3271 3187 1962 238 42 26 chr1 15739963 15740293 -266453371 - LTR40a LTR ERVL 0 519 177 2216 113 0 19 chr1 15740293 15740602 -266453062 - AluSx SINE Alu -9 303 1 1962 238 42 26 chr1 15740602 15740772 -266452892 - LTR40a LTR ERVL -342 177 11 635 218 78 0 chr1 15741624 15741766 -266451898 + MIR SINE MIR 103 255 -7 324 269 58 58 chr1 15742019 15742227 -266451437 + L1MC4 LINE L1 7834 8041 -1 903 153 28 0 chr1 15742408 15742552 -266451112 + FRAM SINE Alu 3 150 -26 593 192 177 23 chr1 15742651 15742720 -266450944 - MIR SINE MIR -19 243 186 1943 142 59 0 chr1 15742720 15743008 -266450656 + AluJb SINE Alu 1 305 -7 593 192 177 23 chr1 15743008 15743097 -266450567 - MIR SINE MIR -76 186 60 2210 202 68 7 chr1 15743845 15744300 -266449364 - MER66B LTR ERV1 -3 483 1 531 203 42 14 chr1 15744708 15744851 -266448813 - L1MD2 LINE L1 -10 6349 6203 369 0 0 0 chr1 15744857 15744898 -266448766 + (TG)n Simple_repeat Simple_repeat 2 42 0 2070 260 35 27 chr1 15744983 15745715 -266447949 - L1M4 LINE L1 -1455 4691 3954 603 283 156 5 chr1 15745967 15746179 -266447485 + MIR SINE MIR 18 261 -1 319 266 39 52 chr1 15747010 15747164 -266446500 - L1ME4a LINE L1 -6 6115 5964 489 266 179 24 chr1 15747444 15747696 -266445968 - L2 LINE L2 -353 2961 2671 198 278 28 42 chr1 15747954 15748026 -266445638 - MER5A DNA MER1_type -58 131 61 2373 89 23 0 chr1 15748079 15748381 -266445283 + AluSx SINE Alu 1 309 -3 329 325 175 21 chr1 15748796 15749082 -266444582 - L1ME4a LINE L1 -2081 5727 5398 3414 153 9 102 chr1 15749469 15749563 -266444101 - L1MB3 LINE L1 -17 6166 6065 1955 140 0 14 chr1 15749563 15749849 -266443815 - AluSx SINE Alu -30 282 1 3414 153 9 102 chr1 15749849 15750292 -266443372 - L1MB3 LINE L1 -118 6065 5724 2127 92 0 10 chr1 15750292 15750587 -266443077 - AluSx SINE Alu -12 300 9 3414 153 9 102 chr1 15750587 15750844 -266442820 - L1MB3 LINE L1 -459 5724 5445 531 238 16 88 chr1 15750970 15751163 -266442501 - MIR SINE MIR -44 218 40 373 260 179 27 chr1 15751863 15752086 -266441578 + MIR SINE MIR 5 261 -1 2509 236 23 18 chr1 15752099 15752672 -266440992 - MLT1E2 LTR MaLR -50 576 1 820 227 29 19 chr1 15752823 15753030 -266440634 - MIR SINE MIR -15 247 39 826 190 0 0 chr1 15753576 15753718 -266439946 + FAM SINE Alu 18 159 -26 204 40 0 0 chr1 15753721 15753746 -266439918 + (CA)n Simple_repeat Simple_repeat 1 25 0 412 263 46 26 chr1 15753807 15753959 -266439705 - MIR SINE MIR -88 174 20 727 273 20 20 chr1 15753963 15754161 -266439503 - MIR SINE MIR -1 261 64 735 132 9 0 chr1 15754161 15754267 -266439397 - FLAM_C SINE Alu -25 118 12 7517 182 21 23 chr1 15754275 15755218 -266438446 - L1MB2 LINE L1 -274 5897 4954 2436 74 0 0 chr1 15755218 15755528 -266438136 - AluY SINE Alu -1 310 1 7517 182 21 23 chr1 15755528 15756248 -266437416 - L1MB2 LINE L1 -1217 4954 4237 279 79 0 0 chr1 15756248 15756286 -266437378 + (TG)n Simple_repeat Simple_repeat 1 38 0 7517 182 21 23 chr1 15756286 15756886 -266436778 - L1MB2 LINE L1 -1934 4237 3637 465 329 13 0 chr1 15756886 15757038 -266436626 + MIR SINE MIR 103 256 -6 2305 90 3 0 chr1 15757397 15757697 -266435967 + AluSx SINE Alu 1 301 -11 1612 189 17 0 chr1 15757810 15758112 -266435552 - AluJo SINE Alu -5 307 1 3209 144 43 36 chr1 15758112 15758743 -266434921 - L1MC2 LINE L1 -15 6329 5695 797 136 53 0 chr1 15758745 15758914 -266434750 + L1MC/D LINE L1 5259 5436 -908 2209 251 11 5 chr1 15758923 15759480 -266434184 - L1M4 LINE L1 -2258 3888 3329 383 157 52 29 chr1 15759498 15759670 -266433994 + (TA)n Simple_repeat Simple_repeat 2 177 0 7929 18 0 0 chr1 15759704 15760667 -266432997 - L1PA3 LINE L1 -3 6152 5191 3837 229 25 12 chr1 15760703 15761623 -266432041 - L1M4 LINE L1 -2817 3329 2393 2035 115 20 3 chr1 15761623 15761918 -266431746 - AluSx SINE Alu -12 300 1 3837 229 25 12 chr1 15761918 15761999 -266431665 - L1M4 LINE L1 -3753 2393 2315 523 241 154 18 chr1 15762045 15762265 -266431399 + MIR SINE MIR 13 262 0 21 36 0 0 chr1 15762277 15762305 -266431359 + AT_rich Low_complexity Low_complexity 1 28 0 1851 110 62 0 chr1 15762467 15762580 -266431084 + AluSg SINE Alu 1 106 -204 2311 72 0 0 chr1 15762580 15762871 -266430793 + AluY SINE Alu 16 306 -5 1851 110 62 0 chr1 15762871 15763030 -266430634 + AluSg SINE Alu 106 290 -20 300 247 72 41 chr1 15763317 15763548 -266430116 + HAL1b LINE L1 1197 1312 -36 236 75 0 25 chr1 15763656 15763696 -266429968 + (TAAAAA)n Simple_repeat Simple_repeat 3 41 0 477 190 40 10 chr1 15763808 15763934 -266429730 + MIR SINE MIR 32 165 -43 353 236 32 32 chr1 15764906 15765029 -266428635 + L1MC/D LINE L1 5687 5809 -1999 630 238 6 55 chr1 15765029 15765210 -266428454 - L1MA10 LINE L1 0 6334 6163 596 219 0 58 chr1 15765221 15765376 -266428288 - L1MB7 LINE L1 -10 6174 6029 2542 185 12 18 chr1 15765421 15765923 -266427741 - L1MB3 LINE L1 -2 6181 5683 2063 97 3 17 chr1 15766033 15766332 -266427332 + AluSx SINE Alu 1 295 -17 636 223 40 7 chr1 15766419 15766567 -266427097 - MIR SINE MIR -39 223 71 2436 48 0 0 chr1 15766676 15766969 -266426695 - AluY SINE Alu -18 293 1 559 301 18 0 chr1 15767810 15767976 -266425688 + MIR SINE MIR 64 232 -30 1825 126 35 3 chr1 15768226 15768512 -266425152 + AluSx SINE Alu 1 295 -17 309 221 91 0 chr1 15768534 15768611 -266425053 - MER91C DNA MER1_type -35 105 22 314 228 120 43 chr1 15769191 15769283 -266424381 - MIR SINE MIR -81 127 29 590 242 107 70 chr1 15769563 15769782 -266423882 - MIR SINE MIR -8 254 24 931 198 127 0 chr1 15769782 15769979 -266423685 + MER58A DNA MER1_type 1 222 -2 590 242 107 70 chr1 15769979 15770003 -266423661 - MIR SINE MIR -238 24 2 2092 95 0 0 chr1 15770183 15770457 -266423207 - AluSx SINE Alu -14 298 25 747 143 20 122 chr1 15770972 15771168 -266422496 - MLT1K LTR MaLR -9 579 404 726 71 9 9 chr1 15771147 15771260 -266422404 + LTR9B LTR ERV1 446 558 -86 * 180 0 0 0 chr1 15771262 15771282 -266422382 + (A)n Simple_repeat Simple_repeat 1 20 0 664 251 89 0 chr1 15771354 15771533 -266422131 - MLT1K LTR MaLR -277 311 117 2081 137 0 3 chr1 15773185 15773492 -266420172 + AluSx SINE Alu 1 306 -6 1250 205 37 13 chr1 15773527 15773859 -266419805 - L1MD3 LINE L1 -661 7124 6777 3658 192 36 52 chr1 15774001 15774562 -266419102 + MER63C DNA MER1_type 68 611 -449 2885 186 0 4 chr1 15774562 15775050 -266418614 - MER66B LTR ERV1 0 486 1 3658 192 36 52 chr1 15775050 15775365 -266418299 + MER63C DNA MER1_type 611 930 0 435 305 104 18 chr1 15775650 15775861 -266417803 + MIR SINE MIR 20 233 -29 2431 54 3 0 chr1 15775906 15776204 -266417460 + AluY SINE Alu 1 299 -12 259 58 0 77 chr1 15776612 15776664 -266417000 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 2113 92 0 3 chr1 15776958 15777271 -266416393 + AluSq SINE Alu 2 313 0 2570 150 24 0 chr1 15777470 15777923 -266415741 + L1MB2 LINE L1 5708 6171 0 1823 165 3 0 chr1 15777928 15778231 -266415433 + AluJb SINE Alu 1 304 -8 268 164 18 18 chr1 15778331 15778386 -266415278 - MLT1K LTR MaLR -342 246 192 2548 97 8 21 chr1 15779015 15779395 -266414269 - THE1C LTR MaLR 0 375 1 258 256 136 50 chr1 15779792 15779977 -266413687 + MIR SINE MIR 19 223 -39 189 253 27 40 chr1 15780135 15780210 -266413454 - L2 LINE L2 -40 3232 3159 351 235 53 83 chr1 15780315 15780447 -266413217 - L2 LINE L2 -9 3304 3177 261 300 22 0 chr1 15780510 15780600 -266413064 + MIR SINE MIR 164 255 -7 213 273 0 45 chr1 15780617 15780683 -266412981 - L2 LINE L2 -184 3088 3026 1718 165 3 13 chr1 15780686 15780995 -266412669 - AluJb SINE Alu -6 306 1 400 223 57 57 chr1 15781443 15781618 -266412046 - L1ME4a LINE L1 0 6121 5947 182 183 67 100 chr1 15781745 15781805 -266411859 - MIR SINE MIR -85 177 120 2121 66 3 72 chr1 15782402 15782721 -266410943 - AluY SINE Alu -14 297 1 1636 110 118 15 chr1 15782817 15783089 -266410575 - AluSg1 SINE Alu -9 300 1 1824 209 47 23 chr1 15783278 15783725 -266409939 - MLT1F1 LTR MaLR 0 567 107 574 130 33 0 chr1 15783738 15783830 -266409834 + MLT1B LTR MaLR 1 95 -295 1216 134 0 0 chr1 15783843 15784029 -266409635 - AluSg/x SINE Alu 0 312 127 1951 73 0 8 chr1 15784033 15784293 -266409371 - AluY SINE Alu -4 307 50 1426 123 40 4 chr1 15784293 15784520 -266409144 + MLT1B LTR MaLR 94 328 -62 716 155 0 39 chr1 15784520 15784649 -266409015 + FLAM_C SINE Alu 6 129 -14 418 155 14 0 chr1 15784667 15784738 -266408926 + MLT1B LTR MaLR 319 390 0 385 253 35 0 chr1 15784738 15784825 -266408839 - MLT1F1 LTR MaLR -451 91 2 1413 205 41 62 chr1 15784826 15785145 -266408519 - L1ME2 LINE L1 -29 6135 5827 2233 104 0 3 chr1 15785145 15785454 -266408210 + AluSg SINE Alu 1 308 -2 1413 205 41 62 chr1 15785454 15785556 -266408108 - L1ME2 LINE L1 -337 5827 5724 1117 161 14 67 chr1 15786039 15786111 -266407553 - MER20 DNA MER1_type 0 219 145 2093 104 3 0 chr1 15786111 15786400 -266407264 - AluSx SINE Alu -22 290 1 1117 161 14 67 chr1 15786400 15786550 -266407114 - MER20 DNA MER1_type -74 145 9 660 244 55 12 chr1 15786815 15786979 -266406685 + MIR SINE MIR 9 179 -83 1688 186 4 0 chr1 15787034 15787314 -266406350 + AluJo SINE Alu 1 281 -31 186 167 0 0 chr1 15787340 15787376 -266406288 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 413 200 0 0 chr1 15787376 15787441 -266406223 + MER2 DNA MER2_type 281 345 0 823 253 65 0 chr1 15787473 15787659 -266406005 - MER58A DNA MER1_type -26 198 1 364 324 0 0 chr1 15787673 15787775 -266405889 - MIR SINE MIR -71 191 90 2497 57 0 0 chr1 15787959 15788260 -266405404 - AluY SINE Alu -10 301 1 762 270 52 9 chr1 15788673 15788884 -266404780 - MIR SINE MIR -6 256 37 577 239 150 14 chr1 15789286 15789499 -266404165 - MLT1H LTR MaLR -5 550 309 253 138 0 52 chr1 15789588 15789646 -266404018 - L1PB1 LINE L1 0 6151 6097 * 3626 135 0 11 chr1 15789642 15790196 -266403468 + L1PB1 LINE L1 5549 6096 -55 787 240 75 37 chr1 15790212 15790466 -266403198 - MLT1H LTR MaLR -244 305 1 378 240 47 113 chr1 15790540 15790595 -266403069 - MLT1K LTR MaLR -7 581 524 1232 196 6 91 chr1 15790595 15790937 -266402727 + AluSq SINE Alu 1 313 0 378 240 47 113 chr1 15790937 15791031 -266402633 - MLT1K LTR MaLR -64 524 442 332 224 30 0 chr1 15791410 15791477 -266402187 + L2 LINE L2 3200 3268 -4 2258 76 7 0 chr1 15792549 15792837 -266400827 - AluSq SINE Alu -23 290 1 392 215 118 118 chr1 15793329 15793453 -266400211 - MIR SINE MIR -7 255 129 1983 114 45 0 chr1 15793453 15793742 -266399922 + AluSx SINE Alu 1 302 -10 392 215 118 118 chr1 15793742 15793854 -266399810 - MIR SINE MIR -132 130 19 2203 66 24 0 chr1 15794151 15794438 -266399226 + AluY SINE Alu 1 294 -17 197 260 233 0 chr1 15794658 15794731 -266398933 + L2 LINE L2 3140 3229 -43 261 83 0 0 chr1 15794731 15794767 -266398897 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 426 324 14 14 chr1 15794767 15794912 -266398752 - L2 LINE L2 -16 3297 3153 2293 103 3 0 chr1 15795275 15795586 -266398078 + AluSx SINE Alu 1 312 0 348 245 154 37 chr1 15796887 15797075 -266396589 - MIR SINE MIR -29 233 24 398 314 8 57 chr1 15797127 15797251 -266396413 + MIR SINE MIR 30 147 -61 2759 68 11 0 chr1 15797252 15797603 -266396061 + THE1A LTR MaLR 1 355 0 12400 77 10 1 chr1 15797603 15799169 -266394495 + THE1A-int LTR MaLR 1 1580 0 2237 72 97 27 chr1 15799169 15799436 -266394228 + THE1A LTR MaLR 1 297 -58 2440 66 0 0 chr1 15799436 15799737 -266393927 - AluY SINE Alu -10 301 1 2237 72 97 27 chr1 15799737 15799800 -266393864 + THE1A LTR MaLR 297 354 -1 458 247 48 42 chr1 15800470 15800636 -266393028 - MER117 DNA MER1_type -27 170 4 200 306 0 0 chr1 15800636 15800685 -266392979 + L2 LINE L2 3251 3299 -14 225 0 0 0 chr1 15800990 15801015 -266392649 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 460 271 137 45 chr1 15801017 15801268 -266392396 - L2 LINE L2 -17 3296 3069 1479 113 17 22 chr1 15801268 15801499 -266392165 - MER30 DNA MER1_type 0 230 1 460 271 137 45 chr1 15801499 15801783 -266391881 - L2 LINE L2 -244 3069 2718 573 219 159 0 chr1 15802279 15802430 -266391234 + MER5A DNA MER1_type 13 187 -2 473 263 58 26 chr1 15802430 15802586 -266391078 - MLT1I LTR MaLR -14 395 235 1684 266 98 14 chr1 15802625 15802671 -266390993 + L1MEc LINE L1 54 95 -6301 188 35 35 0 chr1 15802671 15802700 -266390964 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1684 266 98 14 chr1 15802700 15803285 -266390379 + L1MEc LINE L1 95 738 -5658 2170 198 114 8 chr1 15803482 15803972 -266389692 - MLT1F LTR MaLR 0 542 1 216 238 61 122 chr1 15803996 15804086 -266389578 - MIR SINE MIR -89 173 94 2043 151 0 3 chr1 15804086 15804378 -266389286 + AluJb SINE Alu 1 291 -21 216 238 61 122 chr1 15804378 15804434 -266389230 - MIR SINE MIR -168 94 36 2056 91 44 7 chr1 15805495 15805810 -266387854 + AluSq SINE Alu 1 325 0 425 220 22 0 chr1 15806306 15806627 -266387037 + (TG)n Simple_repeat Simple_repeat 1 328 0 300 275 118 38 chr1 15806850 15807061 -266386603 - L1ME4a LINE L1 0 6121 5894 417 300 56 38 chr1 15807114 15807188 -266386476 - L1ME4a LINE L1 -302 5819 5748 2572 72 0 3 chr1 15807188 15807493 -266386171 - AluY SINE Alu -7 304 1 417 300 56 38 chr1 15807493 15807685 -266385979 - L1ME4a LINE L1 -373 5748 5548 272 205 34 34 chr1 15808561 15808619 -266385045 + MER113 DNA MER1_type? 117 174 -347 2055 123 0 17 chr1 15808619 15808911 -266384753 + AluSx SINE Alu 9 295 -17 272 205 34 34 chr1 15808911 15808969 -266384695 + MER113 DNA MER1_type? 173 233 -288 313 287 67 27 chr1 15809719 15809869 -266383795 - MIR SINE MIR -105 157 2 794 196 117 6 chr1 15810008 15810068 -266383596 - MER3 DNA MER1_type 0 209 157 2362 93 0 23 chr1 15810068 15810378 -266383286 + AluSx SINE Alu 10 312 0 794 196 117 6 chr1 15810378 15810496 -266383168 - MER3 DNA MER1_type -52 157 11 821 132 0 44 chr1 15810701 15810837 -266382827 - FLAM_C SINE Alu -3 130 1 816 132 25 0 chr1 15811188 15811309 -266382355 + FLAM_C SINE Alu 3 126 -17 2205 261 52 25 chr1 15811696 15812526 -266381138 - L1MEc LINE L1 -3135 3405 2554 520 303 57 72 chr1 15812527 15812632 -266381032 - L1MEc LINE L1 -4144 2577 2472 2240 125 3 0 chr1 15812632 15812937 -266380727 - AluSc SINE Alu -1 308 3 520 303 57 72 chr1 15812937 15813294 -266380370 - L1MEc LINE L1 -4249 2472 2199 233 293 68 15 chr1 15813305 15813438 -266380226 - L1MEc LINE L1 -4448 2092 1953 210 308 0 0 chr1 15813440 15813547 -266380117 + (TG)n Simple_repeat Simple_repeat 1 107 0 584 275 31 37 chr1 15813547 15813896 -266379768 - L1MEc LINE L1 -4732 1989 1643 24 0 0 0 chr1 15814084 15814108 -266379556 + AT_rich Low_complexity Low_complexity 1 24 0 416 206 37 37 chr1 15814128 15814235 -266379429 - MIR SINE MIR -123 139 33 952 179 67 0 chr1 15814246 15814425 -266379239 - MER3 DNA MER1_type -18 191 1 2667 73 3 0 chr1 15814539 15814893 -266378771 - THE1A LTR MaLR 0 355 1 623 256 105 0 chr1 15815740 15815931 -266377733 - MIR SINE MIR -5 257 47 195 42 0 0 chr1 15817028 15817052 -266376612 + (TG)n Simple_repeat Simple_repeat 2 25 0 290 306 0 0 chr1 15818225 15818297 -266375367 - L2 LINE L2 -24 3248 3177 2439 93 3 0 chr1 15819459 15819771 -266373893 + AluSp SINE Alu 1 313 0 180 111 0 0 chr1 15819949 15819976 -266373688 + (T)n Simple_repeat Simple_repeat 1 27 0 797 244 6 11 chr1 15821552 15821732 -266371932 + MIR SINE MIR 78 256 -6 452 251 49 18 chr1 15821805 15822003 -266371661 - L1MC4a LINE L1 -321 5800 5651 391 278 163 41 chr1 15822473 15822940 -266370724 - L2 LINE L2 -503 2811 2288 220 324 14 0 chr1 15822975 15823049 -266370615 + L2 LINE L2 3239 3313 0 912 178 0 0 chr1 15823068 15823340 -266370324 + (TGGA)n Simple_repeat Simple_repeat 1 272 0 618 149 0 0 chr1 15823344 15823478 -266370186 + (GGAA)n Simple_repeat Simple_repeat 4 137 0 249 261 11 43 chr1 15823652 15823744 -266369920 - L1MC4a LINE L1 -512 5609 5521 1541 195 7 36 chr1 15824134 15824436 -266369228 + AluJo SINE Alu 2 294 -18 276 125 0 42 chr1 15825004 15825076 -266368588 + (GGA)n Simple_repeat Simple_repeat 3 71 0 192 125 0 0 chr1 15825078 15825110 -266368554 + (ATG)n Simple_repeat Simple_repeat 3 34 0 413 284 40 20 chr1 15825112 15825260 -266368404 - MIR SINE MIR -1 261 111 511 323 28 68 chr1 15825414 15825532 -266368132 - MIR SINE MIR -15 247 143 1923 153 23 0 chr1 15825532 15825833 -266367831 - AluJb SINE Alu -4 308 1 511 323 28 68 chr1 15825833 15825962 -266367702 - MIR SINE MIR -119 143 10 373 288 151 14 chr1 15826161 15826373 -266367291 + MIR SINE MIR 5 245 -17 305 288 25 0 chr1 15827300 15827380 -266366284 - L2 LINE L2 0 3272 3191 261 307 203 13 chr1 15827846 15827999 -266365665 + MIR SINE MIR 48 229 -33 251 250 13 13 chr1 15828814 15828890 -266364774 + MER91A DNA MER1_type 110 185 -11 711 181 54 42 chr1 15829214 15829380 -266364284 + MER20 DNA MER1_type 34 201 -18 245 306 59 0 chr1 15829563 15829648 -266364016 + MIR SINE MIR 57 146 -62 1853 172 107 35 chr1 15829871 15830331 -266363333 - MLT1D LTR MaLR -5 500 8 229 306 157 9 chr1 15830548 15830656 -266363008 + L2 LINE L2 3139 3262 -10 2091 149 0 13 chr1 15830719 15831028 -266362636 - AluSx SINE Alu -7 305 1 2206 106 21 0 chr1 15831545 15831828 -266361836 - AluSx SINE Alu -18 294 6 527 301 229 12 chr1 15831987 15832402 -266361262 - MLT1H LTR MaLR -13 536 32 957 170 37 108 chr1 15832439 15832610 -266361054 - MER58A DNA MER1_type -2196 224 73 2343 106 0 0 chr1 15832610 15832913 -266360751 + AluSx SINE Alu 4 306 -6 957 170 37 108 chr1 15832913 15832982 -266360682 - MER58A DNA MER1_type -2347 73 1 185 316 211 23 chr1 15832983 15833116 -266360548 - MIR3 SINE MIR -49 159 2 * 509 234 74 13 chr1 15833116 15833312 -266360352 - MIR SINE MIR -14 248 1 364 285 250 14 chr1 15834046 15834190 -266359474 - MER5A DNA MER1_type 0 189 12 347 204 114 37 chr1 15834217 15834354 -266359310 + MER5A DNA MER1_type 7 164 -25 1772 197 0 3 chr1 15834374 15834668 -266358996 - AluJo SINE Alu -19 293 1 842 157 0 15 chr1 15834668 15834802 -266358862 - AluJo SINE Alu -177 135 4 361 274 20 65 chr1 15834866 15835019 -266358645 - MER5B DNA MER1_type -32 146 1 757 193 198 0 chr1 15836139 15836326 -266357338 - MER58A DNA MER1_type 0 224 1 239 317 100 17 chr1 15836326 15836446 -266357218 + MIR SINE MIR 17 146 -116 505 336 33 5 chr1 15836456 15836670 -266356994 - MIR SINE MIR -41 221 2 278 302 114 42 chr1 15837576 15837884 -266355780 - L3 LINE CR1 -76 1501 1172 385 259 225 55 chr1 15837927 15838216 -266355448 + MER102b DNA MER1_type 1 338 -3 442 297 131 9 chr1 15838223 15838445 -266355219 - L3 LINE CR1 -466 1111 863 194 307 67 27 chr1 15838447 15838522 -266355142 + MIR SINE MIR 6 83 -179 2024 98 8 4 chr1 15839190 15839456 -266354208 - AluSx SINE Alu -45 267 1 353 319 28 7 chr1 15840459 15840600 -266353064 + MIR SINE MIR 44 187 -75 273 119 0 0 chr1 15840652 15840694 -266352970 + (TTA)n Simple_repeat Simple_repeat 1 42 0 549 268 30 18 chr1 15840917 15841081 -266352583 + MIR SINE MIR 8 173 -89 313 259 14 77 chr1 15841832 15841975 -266351689 - L2 LINE L2 0 3313 3180 345 321 71 0 chr1 15842306 15842446 -266351218 + MIR SINE MIR 48 197 -65 2270 129 0 0 chr1 15842771 15843080 -266350584 + AluSx SINE Alu 2 310 -2 212 296 123 67 chr1 15843140 15843319 -266350345 + MIR SINE MIR 13 201 -61 372 235 77 41 chr1 15843727 15843897 -266349767 - L1ME4a LINE L1 -3 6118 5943 557 317 36 18 chr1 15844728 15844952 -266348712 + MIR SINE MIR 8 235 -27 2532 90 0 0 chr1 15845130 15845442 -266348222 + AluSx SINE Alu 1 312 0 332 285 41 64 chr1 15845845 15846017 -266347647 + MER5A DNA MER1_type 7 174 -15 332 235 31 31 chr1 15846049 15846147 -266347517 + L3 LINE CR1 1060 1157 -420 2438 103 0 0 chr1 15846634 15846935 -266346729 + AluSx SINE Alu 1 301 -11 324 220 33 47 chr1 15847598 15847748 -266345916 - L1ME4a LINE L1 0 6121 5974 2149 184 85 2 chr1 15847873 15848296 -266345368 - LTR24 LTR ERV1 0 467 10 2353 104 0 0 chr1 15848297 15848595 -266345069 + AluSx SINE Alu 1 298 -14 547 297 7 0 chr1 15848766 15848911 -266344753 - L1ME4a LINE L1 -459 5662 5517 2315 86 3 13 chr1 15849051 15849355 -266344309 + AluSc SINE Alu 1 301 -8 795 293 18 4 chr1 15849460 15849685 -266343979 + L3 LINE CR1 1190 1417 -160 971 221 11 0 chr1 15850071 15850261 -266343403 - MER20 DNA MER1_type 0 219 28 2122 135 0 31 chr1 15851273 15851415 -266342249 + AluSx SINE Alu 1 146 -166 2188 62 0 0 chr1 15851415 15851671 -266341993 + AluY SINE Alu 40 295 -16 2122 135 0 31 chr1 15851671 15851846 -266341818 + AluSx SINE Alu 146 308 -4 482 229 14 14 chr1 15851948 15852088 -266341576 - L2 LINE L2 -212 3060 2921 962 212 19 0 chr1 15852946 15853158 -266340506 - MER20 DNA MER1_type 0 219 4 220 307 20 30 chr1 15853203 15853304 -266340360 - L2 LINE L2 0 3272 3173 2462 58 7 0 chr1 15853433 15853728 -266339936 + AluSc SINE Alu 1 297 -12 408 195 35 62 chr1 15854702 15854728 -266338936 + MIR SINE MIR 37 62 -146 2380 146 37 0 chr1 15854728 15855138 -266338526 - MSTC LTR MaLR -3 425 1 408 195 35 62 chr1 15855138 15855224 -266338440 + MIR SINE MIR 62 146 -62 2511 90 0 0 chr1 15856035 15856345 -266337319 + AluSx SINE Alu 1 310 -2 1551 149 87 29 chr1 15857034 15857310 -266336354 - AluJo SINE Alu 0 312 21 2452 89 3 0 chr1 15857713 15858017 -266335647 + AluSg SINE Alu 1 305 -5 242 311 78 0 chr1 15858307 15858410 -266335254 + MIR SINE MIR 64 174 -88 390 277 27 9 chr1 15858824 15858936 -266334728 + MIR SINE MIR 49 162 -100 1604 103 0 0 chr1 15858936 15859139 -266334525 + AluSx SINE Alu 16 218 -94 372 264 76 123 chr1 15859508 15859663 -266334001 + L2 LINE L2 3009 3147 -125 2238 113 0 19 chr1 15859663 15859981 -266333683 - AluSx SINE Alu 0 312 1 372 264 76 123 chr1 15859981 15860101 -266333563 + L2 LINE L2 3147 3271 -1 514 297 63 63 chr1 15860306 15860365 -266333299 + MIR SINE MIR 10 68 -194 2090 115 14 24 chr1 15860365 15860661 -266333003 + AluSq SINE Alu 1 293 -20 514 297 63 63 chr1 15860661 15860840 -266332824 + MIR SINE MIR 67 248 -14 350 283 150 6 chr1 15861468 15861648 -266332016 + MIR SINE MIR 13 218 -44 1926 154 0 7 chr1 15861670 15861984 -266331680 - AluJb SINE Alu 0 312 1 389 277 118 14 chr1 15862010 15862230 -266331434 - L1MC4a LINE L1 -1879 5929 5687 291 279 0 0 chr1 15862874 15862942 -266330722 - L2 LINE L2 0 3272 3205 601 291 48 33 chr1 15863633 15863966 -266329698 - L2 LINE L2 -18 3295 2958 310 335 43 27 chr1 15864111 15864296 -266329368 + L2 LINE L2 3091 3278 -35 212 158 0 0 chr1 15864381 15864419 -266329245 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 650 290 75 4 chr1 15864501 15864756 -266328908 + L2 LINE L2 3041 3313 0 2342 75 7 10 chr1 15864936 15865229 -266328435 + AluSg SINE Alu 1 292 -18 1590 167 37 11 chr1 15865278 15865547 -266328117 + AluJo SINE Alu 1 276 -36 411 186 0 0 chr1 15865636 15865706 -266327958 - MER3 DNA MER1_type -124 85 16 2213 124 3 0 chr1 15866556 15866863 -266326801 - AluSg SINE Alu -2 308 1 262 222 28 14 chr1 15867114 15867186 -266326478 + MIR SINE MIR 63 135 -127 2408 75 0 3 chr1 15867717 15868097 -266325567 - AluY SINE Alu 0 311 1 608 237 177 19 chr1 15868228 15868443 -266325221 + MIR SINE MIR 14 262 0 1500 196 0 19 chr1 15868461 15868732 -266324932 + AluJo SINE Alu 1 266 -46 2029 138 27 7 chr1 15869263 15869561 -266324103 + AluJb SINE Alu 1 304 -8 793 239 16 82 chr1 15869581 15869729 -266323935 - MIR SINE MIR 0 262 135 1928 134 72 0 chr1 15869729 15870020 -266323644 + AluSx SINE Alu 1 312 0 793 239 16 82 chr1 15870020 15870114 -266323550 - MIR SINE MIR -127 135 36 186 43 0 0 chr1 15870455 15870478 -266323186 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 8574 43 10 0 chr1 15870725 15871684 -266321980 - LTR5 LTR ERVK 0 969 1 300 311 94 19 chr1 15871811 15871917 -266321747 - L2 LINE L2 0 3272 3159 811 200 56 37 chr1 15871927 15872142 -266321522 - MER20 DNA MER1_type 0 219 1 363 303 21 88 chr1 15874035 15874273 -266319391 + MIR SINE MIR 31 252 -10 330 315 0 0 chr1 15874274 15874366 -266319298 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 431 287 64 6 chr1 15874756 15874913 -266318751 + MIR SINE MIR 23 188 -74 403 205 79 57 chr1 15875420 15875628 -266318036 - MIR SINE MIR -35 227 17 372 292 0 8 chr1 15875668 15875788 -266317876 + (TG)n Simple_repeat Simple_repeat 2 120 0 1642 163 48 24 chr1 15877211 15877500 -266316164 + AluJo SINE Alu 1 296 -16 252 237 162 64 chr1 15877720 15877949 -266315715 + MIR SINE MIR 4 261 -1 206 287 85 21 chr1 15878412 15878506 -266315158 + MIR SINE MIR 119 218 -44 206 91 61 0 chr1 15878523 15878556 -266315108 + T-rich Low_complexity Low_complexity 3 37 0 1990 124 3 77 chr1 15878558 15878896 -266314768 - AluSq SINE Alu 0 313 1 1005 110 0 7 chr1 15879174 15879310 -266314354 + AluJo SINE Alu 1 135 -177 1949 151 3 3 chr1 15879310 15879608 -266314056 + AluJb SINE Alu 1 298 -14 252 115 10 73 chr1 15879949 15880045 -266313619 + (TCCC)n Simple_repeat Simple_repeat 1 90 0 1643 174 3 11 chr1 15880889 15881176 -266312488 + AluJo SINE Alu 19 303 -9 992 122 5 41 chr1 15881458 15881654 -266312010 + MER53 DNA DNA 1 189 0 2465 82 3 0 chr1 15881771 15882075 -266311589 + AluSx SINE Alu 1 305 -7 373 278 173 16 chr1 15882080 15882271 -266311393 + MER102b DNA MER1_type 119 339 -2 373 73 0 37 chr1 15882997 15883091 -266310573 - Alu SINE Alu 0 301 239 854 103 0 0 chr1 15883093 15883200 -266310464 - AluY SINE Alu -204 107 1 2616 41 3 0 chr1 15883958 15884251 -266309413 + AluY SINE Alu 1 294 -17 308 283 9 19 chr1 15884560 15884666 -266308998 - L2 LINE L2 -2 3311 3207 257 232 217 40 chr1 15884728 15884780 -266308884 + MER106A DNA MER1_type 2 43 -193 2192 103 41 0 chr1 15884780 15885070 -266308594 - AluSx SINE Alu -10 302 1 257 232 217 40 chr1 15885070 15885123 -266308541 + MER106A DNA MER1_type 43 85 -151 339 25 0 0 chr1 15885123 15885163 -266308501 + (CA)n Simple_repeat Simple_repeat 2 41 0 257 232 217 40 chr1 15885163 15885254 -266308410 + MER106A DNA MER1_type 85 234 -2 899 216 0 5 chr1 15885315 15885500 -266308164 - AluSg/x SINE Alu -17 295 112 180 318 16 0 chr1 15885606 15885669 -266307995 - L2 LINE L2 -260 3053 2990 248 138 0 69 chr1 15886394 15886452 -266307212 - MIR SINE MIR -91 171 118 2346 68 20 3 chr1 15886739 15887032 -266306632 + AluY SINE Alu 1 298 -13 1224 68 182 0 chr1 15887419 15887611 -266306053 - MER30 DNA MER1_type 0 230 4 1979 142 0 37 chr1 15887735 15888059 -266305605 + AluJb SINE Alu 1 312 0 314 318 34 34 chr1 15888079 15888227 -266305437 + L1ME4a LINE L1 5974 6121 0 2167 141 0 3 chr1 15888234 15888547 -266305117 + AluSx SINE Alu 1 312 0 2560 60 0 22 chr1 15888610 15888927 -266304737 + AluY SINE Alu 1 310 -1 2066 140 14 0 chr1 15889558 15889850 -266303814 + AluSg SINE Alu 1 296 -14 1074 117 0 0 chr1 15889857 15890002 -266303662 + AluSg/x SINE Alu 156 300 -12 573 288 117 0 chr1 15890052 15890257 -266303407 - MIR SINE MIR 0 262 34 2360 94 0 3 chr1 15890531 15890829 -266302835 - AluSq SINE Alu -16 297 1 26 0 0 0 chr1 15890855 15890881 -266302783 + AT_rich Low_complexity Low_complexity 1 26 0 1975 166 3 0 chr1 15890992 15891287 -266302377 + AluJo SINE Alu 1 296 -16 507 288 40 57 chr1 15891603 15891998 -266301666 + MLT1J LTR MaLR 37 461 -50 546 259 80 71 chr1 15892017 15892208 -266301456 - MLT1H LTR MaLR -16 533 336 1054 200 29 5 chr1 15892208 15892418 -266301246 + MER20 DNA MER1_type 2 216 -3 546 259 80 71 chr1 15892418 15892551 -266301113 - MLT1H LTR MaLR -213 336 206 401 263 0 51 chr1 15892808 15892945 -266300719 - LTR67 LTR ERVL 0 557 428 196 263 0 18 chr1 15893855 15893912 -266299752 - L2 LINE L2 -1 3271 3216 788 21 0 0 chr1 15894045 15894142 -266299522 - L1PA4 LINE L1 -3 6152 6056 357 332 132 5 chr1 15894289 15894479 -266299185 - MIR SINE MIR 0 262 49 680 182 94 61 chr1 15894555 15894736 -266298928 - MER58A DNA MER1_type -8 216 30 3354 167 56 61 chr1 15894858 15895243 -266298421 - MER21A LTR ERV1 -28 903 518 2418 89 0 7 chr1 15895243 15895547 -266298117 + AluSq SINE Alu 1 302 -11 3354 167 56 61 chr1 15895547 15896003 -266297661 - MER21A LTR ERV1 -413 518 23 1692 188 20 7 chr1 15896003 15896301 -266297363 + AluJo SINE Alu 1 302 -10 3354 167 56 61 chr1 15896301 15896324 -266297340 - MER21A LTR ERV1 -908 23 1 1997 132 10 16 chr1 15896522 15896826 -266296838 + AluJb SINE Alu 6 307 -5 332 303 17 17 chr1 15897331 15897450 -266296214 - L2 LINE L2 0 3313 3195 2472 73 0 3 chr1 15898065 15898366 -266295298 + AluY SINE Alu 1 300 -11 509 241 49 12 chr1 15900571 15900733 -266292931 - MER5A DNA MER1_type 0 189 22 38 22 0 0 chr1 15901509 15901554 -266292110 + GC_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 15901993 15902026 -266291638 + GC_rich Low_complexity Low_complexity 1 33 0 401 229 21 10 chr1 15904101 15904197 -266289467 - MIR SINE MIR -146 116 20 292 283 10 20 chr1 15905047 15905146 -266288518 + MIR3 SINE MIR 99 196 -12 324 309 32 56 chr1 15905331 15905457 -266288207 - MIR3 SINE MIR -27 181 59 274 244 337 12 chr1 15906072 15906244 -266287420 + MIR SINE MIR 23 250 -12 336 252 165 0 chr1 15906610 15906725 -266286939 + MIR SINE MIR 56 189 -73 476 199 58 79 chr1 15907149 15907186 -266286478 - MIR SINE MIR -62 146 110 2268 116 0 3 chr1 15907186 15907497 -266286167 - AluSx SINE Alu -2 310 1 476 199 58 79 chr1 15907497 15907613 -266286051 - MIR SINE MIR -98 110 41 501 245 43 22 chr1 15908288 15908427 -266285237 - MIR SINE MIR -109 153 12 405 274 150 26 chr1 15908429 15908523 -266285141 + MER5A DNA MER1_type 17 98 -91 1913 149 3 3 chr1 15908523 15908818 -266284846 - AluJo SINE Alu -17 295 1 405 274 150 26 chr1 15908818 15908876 -266284788 + MER5A DNA MER1_type 98 188 -1 225 108 0 0 chr1 15909254 15909291 -266284373 + (TC)n Simple_repeat Simple_repeat 1 37 0 188 308 51 26 chr1 15909517 15909634 -266284030 + MIR3 SINE MIR 5 124 -84 2436 96 0 0 chr1 15909685 15909997 -266283667 - AluSx SINE Alu 0 312 1 2632 36 0 0 chr1 15910007 15910312 -266283352 - AluY SINE Alu -6 305 1 355 298 164 35 chr1 15910314 15910485 -266283179 + L3 LINE CR1 1377 1569 -8 554 288 156 0 chr1 15910507 15910719 -266282945 + MIR SINE MIR 4 248 -14 320 238 62 33 chr1 15911249 15911371 -266282293 + MIR3 SINE MIR 35 165 -43 1725 159 33 10 chr1 15912040 15912216 -266281448 - AluJb SINE Alu -3 309 139 234 0 0 0 chr1 15912216 15912242 -266281422 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2137 117 0 0 chr1 15912242 15912525 -266281139 - AluSg SINE Alu -27 283 1 1725 159 33 10 chr1 15912525 15912649 -266281015 - AluJb SINE Alu -172 140 1 742 272 60 4 chr1 15912710 15912945 -266280719 - MIR SINE MIR -1 261 14 275 330 28 18 chr1 15913631 15913740 -266279924 - MIR SINE MIR -2 260 151 704 181 44 106 chr1 15913744 15913793 -266279871 - MER20 DNA MER1_type 0 219 169 2251 108 0 0 chr1 15913793 15914098 -266279566 - AluSg SINE Alu -5 305 1 704 181 44 106 chr1 15914098 15914274 -266279390 - MER20 DNA MER1_type -50 169 8 2448 69 0 0 chr1 15914287 15914591 -266279073 + AluY SINE Alu 1 304 -7 316 237 110 18 chr1 15915189 15915330 -266278334 + MIR SINE MIR 7 151 -62 1890 132 47 7 chr1 15915615 15915911 -266277753 + AluJo SINE Alu 1 308 -4 747 212 196 5 chr1 15916612 15916796 -266276868 + MER20 DNA MER1_type 1 219 0 2224 105 0 0 chr1 15916950 15917244 -266276420 + AluSx SINE Alu 1 294 -18 288 341 8 23 chr1 15917286 15917415 -266276249 + L3 LINE CR1 1343 1469 -108 209 310 163 31 chr1 15917956 15918085 -266275579 - L2 LINE L2 -1 3312 3167 318 271 45 45 chr1 15919726 15919851 -266273813 - MIR SINE MIR -69 139 63 2238 106 0 13 chr1 15919918 15920229 -266273435 + AluSx SINE Alu 1 307 -5 480 318 32 21 chr1 15922186 15922297 -266271367 - MIR SINE MIR -36 226 110 2246 84 0 0 chr1 15922297 15922605 -266271059 + AluSx SINE Alu 1 308 0 480 318 32 21 chr1 15922605 15922681 -266270983 - MIR SINE MIR -152 110 36 241 304 29 0 chr1 15922886 15922955 -266270709 + MIR SINE MIR 83 153 -55 854 138 0 0 chr1 15923247 15923370 -266270294 + FLAM_C SINE Alu 5 127 -16 1608 139 94 8 chr1 15923622 15923914 -266269750 + AluJo SINE Alu 1 315 0 197 250 78 0 chr1 15924652 15924716 -266268948 + L2 LINE L2 3187 3255 -17 249 108 0 0 chr1 15924721 15924758 -266268906 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2078 138 0 0 chr1 15924856 15925152 -266268512 + AluSx SINE Alu 1 296 -16 513 192 62 71 chr1 15925601 15925763 -266267901 - ORSL DNA AcHobo -31 244 83 1735 189 0 3 chr1 15925763 15926075 -266267589 - AluJo SINE Alu -1 311 1 513 192 62 71 chr1 15926075 15926136 -266267528 - ORSL DNA AcHobo -192 83 23 358 234 224 88 chr1 15926185 15926260 -266267404 - MIR SINE MIR 0 262 199 2358 91 3 0 chr1 15926260 15926569 -266267095 - AluSx SINE Alu -2 310 1 358 234 224 88 chr1 15926569 15926685 -266266979 - MIR SINE MIR -63 199 45 863 165 0 16 chr1 15927064 15927246 -266266418 + (TG)n Simple_repeat Simple_repeat 2 180 0 216 195 172 35 chr1 15927409 15927496 -266266168 - MIR SINE MIR -75 133 35 1790 117 48 15 chr1 15927881 15928154 -266265510 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr1 15928163 15928186 -266265478 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1446 98 25 0 chr1 15928186 15928390 -266265274 + AluSg/x SINE Alu 83 291 -19 329 277 12 0 chr1 15928712 15928795 -266264869 - MIR3 SINE MIR -9 199 116 316 309 32 0 chr1 15929013 15929107 -266264557 + MIR SINE MIR 36 132 -76 1051 146 0 12 chr1 15929108 15929273 -266264391 - FRAM SINE Alu -12 164 2 381 311 50 0 chr1 15929276 15929395 -266264269 + MIR SINE MIR 125 249 -13 1528 163 50 21 chr1 15929425 15929708 -266263956 + AluSx SINE Alu 17 307 -5 1059 158 0 0 chr1 15929708 15929873 -266263791 + AluSg/x SINE Alu 132 296 -14 271 278 157 9 chr1 15930317 15930425 -266263239 + MIR SINE MIR 30 153 -109 269 328 125 0 chr1 15930594 15930722 -266262942 + MIR3 SINE MIR 40 183 -25 838 268 0 71 chr1 15930740 15930852 -266262812 - MIR SINE MIR 0 262 144 2377 87 10 0 chr1 15930852 15931161 -266262503 + AluSq SINE Alu 2 313 0 838 268 0 71 chr1 15931161 15931317 -266262347 - MIR SINE MIR -118 144 13 2121 116 0 0 chr1 15931439 15931749 -266261915 - AluSq SINE Alu 0 310 1 263 372 41 0 chr1 15931760 15931881 -266261783 - MIR SINE MIR -56 206 81 863 249 111 51 chr1 15932433 15932605 -266261059 - L2 LINE L2 -3 3310 3150 2305 92 0 0 chr1 15932605 15932910 -266260754 + AluSx SINE Alu 1 305 -7 863 249 111 51 chr1 15932910 15933321 -266260343 - L2 LINE L2 -163 3150 2701 39 0 0 0 chr1 15933329 15933368 -266260296 + AT_rich Low_complexity Low_complexity 1 39 0 1161 170 62 136 chr1 15933402 15933561 -266260103 - AluSx SINE Alu -13 299 175 185 0 40 0 chr1 15933561 15933586 -266260078 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1161 170 62 136 chr1 15933586 15933749 -266259915 - AluSx SINE Alu -137 175 1 250 319 84 0 chr1 15933753 15933872 -266259792 - L2 LINE L2 -606 2708 2580 360 333 167 0 chr1 15933872 15934016 -266259648 - MIR SINE MIR -75 187 20 433 243 226 11 chr1 15934545 15934722 -266258942 - MIR SINE MIR -11 251 37 201 244 0 0 chr1 15935382 15935427 -266258237 - MIR SINE MIR 0 262 218 334 299 0 0 chr1 15935438 15935525 -266258139 + MIR SINE MIR 163 249 -13 1714 158 13 39 chr1 15935685 15935995 -266257669 + AluJo SINE Alu 9 310 -2 582 294 88 0 chr1 15936612 15936782 -266256882 + MIR SINE MIR 10 194 -68 251 217 71 9 chr1 15937023 15937116 -266256548 - MIR SINE MIR -71 137 33 1044 150 0 2 chr1 15937504 15937788 -266255876 + (TTCA)n Simple_repeat Simple_repeat 1 461 0 190 318 16 63 chr1 15937806 15937932 -266255732 - L2 LINE L2 0 3313 3194 200 298 91 41 chr1 15938912 15939033 -266254631 - L2 LINE L2 -9 3304 3178 224 239 269 0 chr1 15939041 15939171 -266254493 - MIR3 SINE MIR -4 204 40 204 386 83 0 chr1 15939671 15939816 -266253848 - L2 LINE L2 -131 3141 2985 2243 94 0 41 chr1 15939872 15940046 -266253618 - AluSx SINE Alu -5 307 150 2301 65 0 26 chr1 15940046 15940352 -266253312 - AluY SINE Alu -13 298 1 2243 94 0 41 chr1 15940352 15940497 -266253167 - AluSx SINE Alu -162 150 1 1112 213 47 20 chr1 15940637 15940891 -266252773 - MIR SINE MIR 0 262 2 22 0 0 0 chr1 15940916 15940938 -266252726 + AT_rich Low_complexity Low_complexity 1 22 0 310 181 14 14 chr1 15940975 15941047 -266252617 + MLT1J LTR MaLR 236 307 -204 511 172 50 0 chr1 15941310 15941409 -266252255 + MER81 DNA DNA 2 105 -9 509 350 49 21 chr1 15941416 15941742 -266251922 - L2 LINE L2 -460 2854 2520 1983 152 3 0 chr1 15941829 15942138 -266251526 + AluJo SINE Alu 1 310 -2 2093 95 10 23 chr1 15942210 15942515 -266251149 + AluSq SINE Alu 1 301 -12 2576 181 50 8 chr1 15942576 15943061 -266250603 + MLT1D LTR MaLR 1 505 0 897 226 83 17 chr1 15943363 15943593 -266250071 - MIR SINE MIR -5 257 13 283 286 91 32 chr1 15943798 15943952 -266249712 - MLT1H LTR MaLR -13 536 374 236 184 20 0 chr1 15944017 15944066 -266249598 - MLT1H LTR MaLR -481 68 19 334 198 172 26 chr1 15944119 15944235 -266249429 + MIR3 SINE MIR 11 143 -65 2275 82 0 3 chr1 15944351 15944642 -266249022 - AluSq SINE Alu -21 292 3 908 153 169 0 chr1 15945023 15945206 -266248458 + MER58A DNA MER1_type 10 223 -1 293 348 39 34 chr1 15945292 15945441 -266248223 - MIR SINE MIR -19 243 94 294 239 312 36 chr1 15945441 15945579 -266248085 - MER5A DNA MER1_type 0 189 14 1708 116 95 7 chr1 15945719 15946004 -266247660 + AluSx SINE Alu 1 310 -2 245 328 25 49 chr1 15946009 15946131 -266247533 - MIR SINE MIR -77 185 67 221 338 40 0 chr1 15946283 15946357 -266247307 - MIR SINE MIR -102 106 30 2291 97 3 0 chr1 15946560 15946869 -266246795 + AluSg SINE Alu 1 310 0 2133 126 0 0 chr1 15946913 15947215 -266246449 - AluSx SINE Alu -10 302 1 187 284 118 78 chr1 15947389 15947491 -266246173 - MIR SINE MIR -77 185 80 815 228 76 38 chr1 15947512 15947723 -266245941 - MER20 DNA MER1_type 0 219 1 2031 109 3 7 chr1 15947783 15948098 -266245566 + AluSx SINE Alu 1 314 0 2075 121 7 0 chr1 15949036 15949333 -266244331 + AluSx SINE Alu 1 299 -13 2280 94 13 0 chr1 15950337 15950645 -266243019 + AluSx SINE Alu 1 312 0 1025 152 0 0 chr1 15950700 15950858 -266242806 - FRAM SINE Alu -15 161 4 1798 128 3 17 chr1 15950869 15951157 -266242507 - AluJo SINE Alu -15 297 14 354 263 0 0 chr1 15951462 15951542 -266242122 + MER96B DNA MER1_type? 3 82 -335 751 172 23 0 chr1 15951542 15951670 -266241994 + FLAM_A SINE Alu 1 131 -2 247 263 0 0 chr1 15951722 15951779 -266241885 - AluJ/monomer SINE Alu -3 297 241 255 332 55 18 chr1 15951810 15951947 -266241717 - MIR SINE MIR -62 146 1 22 0 0 0 chr1 15952393 15952415 -266241249 + AT_rich Low_complexity Low_complexity 1 22 0 667 205 0 8 chr1 15952415 15952542 -266241122 - FLAM_A SINE Alu -7 126 1 977 87 0 67 chr1 15952542 15952576 -266241088 - AluJb SINE Alu -173 139 104 2580 111 0 8 chr1 15952576 15952954 -266240710 - THE1C LTR MaLR 0 375 1 977 87 0 67 chr1 15952954 15953068 -266240596 - AluJb SINE Alu -208 104 1 468 238 0 8 chr1 15953071 15953193 -266240471 - MER96B DNA MER1_type? -296 121 1 290 289 215 20 chr1 15953654 15953803 -266239861 + MIR SINE MIR 79 256 -6 409 236 98 8 chr1 15954010 15954133 -266239531 + MIR3 SINE MIR 38 171 -37 704 223 0 57 chr1 15955366 15955474 -266238190 + MIR SINE MIR 44 140 -122 1881 129 24 31 chr1 15955474 15955768 -266237896 + AluSx SINE Alu 1 292 -20 704 223 0 57 chr1 15955768 15955834 -266237830 + MIR SINE MIR 140 208 -54 402 220 119 8 chr1 15956471 15956589 -266237075 + MIR3 SINE MIR 13 143 -65 2294 105 10 0 chr1 15956710 15957015 -266236649 - AluSx SINE Alu -4 308 1 266 200 0 0 chr1 15957512 15957557 -266236107 - MLT1K LTR MaLR -343 245 201 2175 102 24 0 chr1 15957987 15958281 -266235383 + AluSx SINE Alu 1 301 -11 633 277 81 17 chr1 15958704 15958939 -266234725 + MIR SINE MIR 13 262 0 2118 124 7 16 chr1 15959514 15959821 -266233843 + AluSp SINE Alu 2 305 -8 559 214 9 0 chr1 15959993 15960105 -266233559 + MER81 DNA DNA 1 113 -1 26 0 0 0 chr1 15960205 15960231 -266233433 + AT_rich Low_complexity Low_complexity 1 26 0 1533 181 61 11 chr1 15960231 15960508 -266233156 + AluJo SINE Alu 1 291 -21 2253 116 0 0 chr1 15960612 15960913 -266232751 + AluSx SINE Alu 11 311 -1 202 132 53 0 chr1 15961004 15961042 -266232622 + MIR3 SINE MIR 120 159 -49 307 260 143 91 chr1 15962158 15962287 -266231377 - L1ME4a LINE L1 0 6121 6000 2418 100 0 0 chr1 15962287 15962586 -266231078 - AluSx SINE Alu -13 299 1 307 260 143 91 chr1 15962586 15962898 -266230766 - L1ME4a LINE L1 -121 6000 5657 2138 138 6 3 chr1 15962970 15963281 -266230383 + AluSx SINE Alu 1 312 0 1238 123 40 26 chr1 15963421 15963648 -266230016 + AluSg/x SINE Alu 65 294 -16 2034 122 20 3 chr1 15963652 15963955 -266229709 + AluSg SINE Alu 3 310 0 1864 163 0 23 chr1 15964516 15964823 -266228841 + AluJb SINE Alu 5 304 -8 506 183 0 42 chr1 15965071 15965191 -266228473 + MLT1K LTR MaLR 133 247 -341 896 191 14 48 chr1 15965304 15965514 -266228150 + MER20 DNA MER1_type 17 219 0 354 287 97 31 chr1 15965586 15965772 -266227892 + MLT1K LTR MaLR 374 575 -13 2224 111 7 3 chr1 15965772 15966079 -266227585 + AluSx SINE Alu 1 308 -4 193 294 108 0 chr1 15966097 15966199 -266227465 - MIR3 SINE MIR -28 180 68 262 297 40 0 chr1 15966349 15966423 -266227241 - MIR SINE MIR -102 106 30 186 273 65 26 chr1 15966549 15966626 -266227038 - MIR SINE MIR -78 130 51 1525 76 10 0 chr1 15966626 15966824 -266226840 + AluSg SINE Alu 1 200 -110 605 200 6 69 chr1 15966824 15966984 -266226680 - AluJb SINE Alu -80 232 83 2353 116 0 0 chr1 15966985 15967295 -266226369 - AluSx SINE Alu -2 310 1 755 228 79 10 chr1 15967558 15967760 -266225904 - MER20 DNA MER1_type -3 216 1 2266 112 3 6 chr1 15967820 15968133 -266225531 + AluSx SINE Alu 1 312 0 252 86 0 0 chr1 15968168 15968203 -266225461 + (GAAAA)n Simple_repeat Simple_repeat 1 35 0 2022 153 3 0 chr1 15969079 15969374 -266224290 + AluSx SINE Alu 1 296 -16 1427 108 16 0 chr1 15970395 15970581 -266223083 + AluSq SINE Alu 1 189 -124 2291 99 3 10 chr1 15970607 15970921 -266222743 - AluSp SINE Alu 0 312 1 2097 130 7 10 chr1 15970944 15971245 -266222419 - AluSx SINE Alu -12 300 1 288 311 89 15 chr1 15971295 15971430 -266222234 - MIR SINE MIR -110 152 8 2236 106 0 3 chr1 15971641 15971943 -266221721 + AluSx SINE Alu 1 301 -11 976 240 86 67 chr1 15971943 15972600 -266221064 - L2 LINE L2 -122 3191 2511 1677 132 21 42 chr1 15972611 15972784 -266220880 - AluJb SINE Alu -30 282 116 2736 85 3 3 chr1 15972784 15973159 -266220505 - THE1C LTR MaLR 0 375 1 1677 132 21 42 chr1 15973159 15973273 -266220391 - AluJb SINE Alu -196 116 1 534 191 0 24 chr1 15973278 15973404 -266220260 + MER96B DNA MER1_type? 295 417 0 220 306 224 14 chr1 15973864 15974011 -266219653 + MIR SINE MIR 79 256 -6 442 196 93 0 chr1 15974218 15974325 -266219339 + MIR3 SINE MIR 38 154 -54 2269 93 0 7 chr1 15975153 15975444 -266218220 - AluY SINE Alu -2 309 21 684 248 86 48 chr1 15975915 15976023 -266217641 + MIR SINE MIR 44 146 -116 2101 132 0 3 chr1 15976023 15976319 -266217345 + AluSx SINE Alu 1 295 -17 684 248 86 48 chr1 15976319 15976420 -266217244 + MIR SINE MIR 146 261 -1 386 250 180 10 chr1 15977044 15977249 -266216415 + MIR3 SINE MIR 13 262 0 2223 102 10 0 chr1 15977279 15977572 -266216092 - AluSx SINE Alu -16 296 1 307 273 78 23 chr1 15977987 15978115 -266215549 - MLT1K LTR MaLR -263 325 191 2121 109 28 0 chr1 15978576 15978859 -266214805 + AluSx SINE Alu 1 291 -21 574 281 110 13 chr1 15979281 15979509 -266214155 + MIR SINE MIR 13 262 0 566 209 9 0 chr1 15980248 15980358 -266213306 + MER81 DNA DNA 1 111 -3 26 0 0 0 chr1 15980456 15980482 -266213182 + AT_rich Low_complexity Low_complexity 1 26 0 1681 175 14 14 chr1 15980482 15980773 -266212891 + AluJo SINE Alu 1 291 -21 402 267 133 64 chr1 15982115 15982247 -266211417 - L1ME4a LINE L1 0 6121 6000 2340 109 0 0 chr1 15982247 15982551 -266211113 - AluSx SINE Alu -8 304 1 402 267 133 64 chr1 15982551 15982598 -266211066 - L1ME4a LINE L1 -121 6000 5958 351 0 0 0 chr1 15982598 15982637 -266211027 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 402 267 133 64 chr1 15982637 15982891 -266210773 - L1ME4a LINE L1 -163 5958 5657 2235 101 14 7 chr1 15982963 15983260 -266210404 + AluSx SINE Alu 1 299 -13 1950 164 0 16 chr1 15983853 15984163 -266209501 + AluJb SINE Alu 1 305 -7 555 134 134 0 chr1 15984455 15984552 -266209112 + FLAM_A SINE Alu 1 110 -32 710 256 79 0 chr1 15984824 15985027 -266208637 + MER20 DNA MER1_type 1 219 0 201 333 0 0 chr1 15986589 15986640 -266207024 - MIR SINE MIR -67 141 91 2327 117 0 0 chr1 15986661 15986959 -266206705 + AluSx SINE Alu 2 299 -13 2647 65 0 0 chr1 15986959 15987267 -266206397 + AluY SINE Alu 1 308 -3 240 333 83 15 chr1 15987274 15987406 -266206258 - MIR SINE MIR -6 256 116 295 276 69 0 chr1 15987492 15987579 -266206085 - MIR SINE MIR -82 126 34 1642 131 75 42 chr1 15987925 15988260 -266205404 + MER4A LTR ERV1 1 346 -318 673 161 274 20 chr1 15988269 15988517 -266205147 + MER4C LTR ERV1 149 459 -6 2464 189 37 5 chr1 15988523 15989121 -266204543 + L1 LINE L1 3867 4483 -1663 1817 157 50 0 chr1 15989124 15989404 -266204260 + AluJb SINE Alu 1 294 -18 2043 119 0 28 chr1 15989405 15989725 -266203939 + AluSx SINE Alu 1 311 -1 1289 134 107 40 chr1 15989834 15990133 -266203531 + MER4A LTR ERV1 28 346 -318 628 179 279 16 chr1 15990142 15990393 -266203271 + MER4C LTR ERV1 149 465 0 3921 188 46 17 chr1 15990395 15990987 -266202677 + L1 LINE L1 3871 4444 -1702 1817 157 50 0 chr1 15990987 15991267 -266202397 + AluJb SINE Alu 1 294 -18 2399 106 0 3 chr1 15991268 15991580 -266202084 + AluSx SINE Alu 1 311 -1 3921 188 46 17 chr1 15991580 15991603 -266202061 + L1 LINE L1 4444 4465 -1681 2358 110 0 0 chr1 15991603 15991911 -266201753 + AluSc SINE Alu 1 308 -1 3921 188 46 17 chr1 15991911 15992292 -266201372 + L1 LINE L1 4465 4899 -1247 457 185 42 59 chr1 15992294 15992316 -266201348 - AluJo/FRAM SINE Alu -2 310 289 2015 130 25 0 chr1 15992316 15992601 -266201063 - AluJb SINE Alu -2 310 19 457 185 42 59 chr1 15992601 15992697 -266200967 - AluJo/FRAM SINE Alu -23 289 194 306 83 0 50 chr1 15992704 15992764 -266200900 + L1MB2 LINE L1 6115 6171 0 2284 85 41 0 chr1 15992983 15993277 -266200387 - AluY SINE Alu -5 306 1 206 304 51 13 chr1 15993326 15993405 -266200259 - MIR SINE MIR -88 174 93 485 303 118 15 chr1 15993757 15994028 -266199636 + L1ME4a LINE L1 5593 5891 -230 25 0 0 0 chr1 15994360 15994385 -266199279 + AT_rich Low_complexity Low_complexity 1 25 0 79 30 0 0 chr1 15995595 15995695 -266197969 + AT_rich Low_complexity Low_complexity 1 100 0 633 174 21 35 chr1 15995998 15996142 -266197522 - FRAM SINE Alu -7 169 28 1500 140 0 19 chr1 15996546 15996760 -266196904 + AluJb SINE Alu 3 212 -100 332 254 100 18 chr1 15996926 15997036 -266196628 + L2 LINE L2 3193 3311 -2 708 93 83 0 chr1 15997469 15997577 -266196087 - FLAM_C SINE Alu -25 118 2 549 148 30 0 chr1 15998456 15998557 -266195107 + MER5A DNA MER1_type 1 104 -85 219 302 226 0 chr1 15998628 15998734 -266194930 - MER5A DNA MER1_type -8 181 52 384 250 0 11 chr1 15998805 15998897 -266194767 - Charlie8 DNA MER1_type -2235 182 92 300 309 32 0 chr1 15998945 15999068 -266194596 - MIR3 SINE MIR -48 160 34 2276 91 0 60 chr1 15999606 15999925 -266193739 + AluSx SINE Alu 1 300 -12 357 242 217 0 chr1 16000052 16000172 -266193492 - MIR SINE MIR -71 191 46 952 236 75 20 chr1 16001435 16001740 -266191924 + L1ME2 LINE L1 5512 5833 -329 1297 226 79 82 chr1 16001740 16001841 -266191823 + LTR9 LTR ERV1 1 101 -678 2395 112 0 6 chr1 16001841 16002154 -266191510 - AluSq SINE Alu -2 311 1 1297 226 79 82 chr1 16002154 16002738 -266190926 + LTR9 LTR ERV1 101 779 0 277 227 84 84 chr1 16002738 16002782 -266190882 + L1ME2 LINE L1 5830 5873 -291 2074 76 32 63 chr1 16002782 16003098 -266190566 + AluSq SINE Alu 1 306 -7 277 227 84 84 chr1 16003098 16003207 -266190457 + L1ME2 LINE L1 5872 5983 -181 244 218 0 18 chr1 16003223 16003278 -266190386 + L2 LINE L2 3219 3272 0 2270 84 3 0 chr1 16003372 16003669 -266189995 - AluSx SINE Alu -14 298 1 377 302 115 36 chr1 16003724 16003976 -266189688 + MARNA DNA Mariner 109 380 -206 1035 151 6 20 chr1 16004379 16004687 -266188977 - LTR42 LTR ERVL -1 494 153 810 205 51 0 chr1 16004687 16004843 -266188821 - AluSg/x SINE Alu -8 304 141 2166 118 0 0 chr1 16004846 16005143 -266188521 - AluSx SINE Alu -15 297 1 1211 112 12 0 chr1 16005144 16005305 -266188359 - LTR42 LTR ERVL -332 163 1 199 279 12 47 chr1 16005439 16005525 -266188139 - MIR SINE MIR -70 192 110 2075 183 85 44 chr1 16005661 16006120 -266187544 + MLT2B1 LTR ERVL 3 480 -40 237 263 0 0 chr1 16006135 16006192 -266187472 + (TA)n Simple_repeat Simple_repeat 2 58 0 293 251 26 0 chr1 16006192 16006281 -266187383 - MIR SINE MIR -81 127 37 2200 86 0 13 chr1 16006315 16006617 -266187047 + AluY SINE Alu 1 298 -13 277 222 167 14 chr1 16006661 16006733 -266186931 - L2 LINE L2 -2 3311 3229 281 100 0 0 chr1 16006754 16006794 -266186870 + MLT2D LTR ERVL 367 406 -8 308 248 129 30 chr1 16007066 16007167 -266186497 + L2 LINE L2 3162 3272 0 707 251 18 54 chr1 16007227 16007450 -266186214 + MIR SINE MIR 34 248 -14 969 194 28 28 chr1 16007519 16007730 -266185934 - MER20 DNA MER1_type -8 211 1 282 208 187 32 chr1 16007956 16008061 -266185603 + MIR SINE MIR 37 139 -69 1849 158 7 3 chr1 16008162 16008472 -266185192 + AluSx SINE Alu 1 311 -1 587 235 12 31 chr1 16008940 16009102 -266184562 + L1ME3 LINE L1 5728 5886 -276 289 327 93 0 chr1 16009101 16009208 -266184456 + L1ME3 LINE L1 5443 5559 -2249 * 866 179 0 0 chr1 16009212 16009358 -266184306 + AluJb SINE Alu 1 147 -161 2221 103 0 0 chr1 16009358 16009658 -266184006 + AluSx SINE Alu 1 300 -12 1511 114 57 4 chr1 16009687 16009933 -266183731 + AluJb SINE Alu 42 300 -12 678 233 0 0 chr1 16009948 16010077 -266183587 - FLAM_A SINE Alu -4 129 1 234 323 104 0 chr1 16010078 16010174 -266183490 + L1ME3 LINE L1 5548 5653 -2155 526 327 87 1 chr1 16010283 16010502 -266183162 + MIR SINE MIR 23 262 0 1313 240 44 32 chr1 16010600 16011009 -266182655 + L1ME3 LINE L1 5728 6141 -21 325 282 29 48 chr1 16011009 16011112 -266182552 + MIR SINE MIR 80 180 -82 207 0 0 0 chr1 16011303 16011326 -266182338 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 272 313 121 10 chr1 16012020 16012119 -266181545 - L2 LINE L2 -40 3273 3164 2009 129 10 10 chr1 16012301 16012612 -266181052 - AluSx SINE Alu -1 311 1 1857 146 10 7 chr1 16012617 16012919 -266180745 - AluSx SINE Alu -9 303 1 1825 122 14 20 chr1 16013162 16013457 -266180207 + AluJo SINE Alu 1 293 -19 535 242 73 0 chr1 16013599 16013723 -266179941 + MER3 DNA MER1_type 1 133 -76 1475 180 60 67 chr1 16013723 16014109 -266179555 + LTR13 LTR ERVK 1 437 -570 1457 88 19 10 chr1 16014110 16014315 -266179349 + AluSg SINE Alu 2 208 -102 2527 46 0 0 chr1 16014315 16014620 -266179044 + AluY SINE Alu 1 307 -4 713 133 0 0 chr1 16014622 16014727 -266178937 + AluSg SINE Alu 198 302 -10 2711 162 43 47 chr1 16014727 16015308 -266178356 + LTR13 LTR ERVK 428 1006 -1 364 183 12 24 chr1 16015309 16015391 -266178273 + MER3 DNA MER1_type 129 209 0 405 240 23 105 chr1 16015748 16015860 -266177804 + Charlie8 DNA MER1_type 47 142 -2275 1351 171 53 36 chr1 16015860 16016141 -266177523 + AluJo SINE Alu 1 286 -26 405 240 23 105 chr1 16016141 16016199 -266177465 + Charlie8 DNA MER1_type 142 203 -2214 458 257 267 0 chr1 16016673 16016860 -266176804 - MIR SINE MIR -19 243 7 394 312 122 3 chr1 16016995 16017254 -266176410 + MER93a LTR ERV1 61 358 -44 210 145 0 81 chr1 16018273 16018335 -266175329 + (CCCCG)n Simple_repeat Simple_repeat 3 59 0 558 308 57 40 chr1 16018797 16019024 -266174640 - MIR SINE MIR -14 248 18 498 246 143 35 chr1 16019071 16019274 -266174390 - L2 LINE L2 0 3313 3089 478 237 25 25 chr1 16019504 16019622 -266174042 + MIR3 SINE MIR 88 205 -3 509 279 116 16 chr1 16020547 16020737 -266172927 - MIR SINE MIR -5 257 49 2187 90 7 3 chr1 16021295 16021596 -266172068 + AluSx SINE Alu 1 302 -10 1824 136 28 62 chr1 16022900 16023254 -266170410 + MER2 DNA MER2_type 2 343 -1 939 112 0 22 chr1 16023277 16023411 -266170253 + AluJo SINE Alu 1 131 -171 660 90 11 0 chr1 16023411 16023500 -266170164 + AluJo SINE Alu 204 293 -19 384 274 62 62 chr1 16023742 16023838 -266169826 - MIR SINE MIR -15 247 149 2161 110 0 0 chr1 16023838 16024130 -266169534 - AluSx SINE Alu -20 292 1 384 274 62 62 chr1 16024130 16024179 -266169485 - MIR SINE MIR -112 150 102 22 0 0 0 chr1 16024461 16024483 -266169181 + AT_rich Low_complexity Low_complexity 1 22 0 739 142 0 0 chr1 16026359 16026465 -266167199 + FLAM_C SINE Alu 2 107 -36 2207 110 0 3 chr1 16026487 16026795 -266166869 + AluSx SINE Alu 1 307 -5 1951 89 52 10 chr1 16027583 16027874 -266165790 + AluSg SINE Alu 1 303 -7 1404 176 75 14 chr1 16028606 16028885 -266164779 + AluJb SINE Alu 1 296 -16 1243 183 11 27 chr1 16028905 16029168 -266164496 - AluJo SINE Alu -14 298 40 2379 73 0 19 chr1 16029204 16029521 -266164143 - AluSp SINE Alu -2 311 1 2107 119 0 0 chr1 16029998 16030292 -266163372 - AluSx SINE Alu -18 294 1 180 386 57 0 chr1 16030527 16030597 -266163067 - L2 LINE L2 -80 3192 3119 696 284 96 4 chr1 16030777 16031016 -266162648 - MIR SINE MIR 0 262 2 2316 88 0 0 chr1 16031257 16031562 -266162102 + AluSg SINE Alu 2 306 -4 2042 118 7 0 chr1 16031577 16031873 -266161791 + AluSx SINE Alu 1 298 -14 2437 61 0 3 chr1 16032375 16032687 -266160977 - AluY SINE Alu 0 311 1 828 197 33 13 chr1 16032687 16032839 -266160825 - AluJb SINE Alu -10 302 148 2042 125 3 0 chr1 16032887 16033183 -266160481 + AluSx SINE Alu 1 297 -15 2229 112 0 0 chr1 16033185 16033490 -266160174 + AluSx SINE Alu 1 305 -7 343 219 55 0 chr1 16033533 16033606 -266160058 - AluSc SINE Alu -106 193 117 543 249 52 10 chr1 16033615 16033764 -266159900 + MIR SINE MIR 17 174 -34 607 144 0 0 chr1 16033787 16033877 -266159787 - AluJ/FLAM SINE Alu -221 91 2 362 315 163 20 chr1 16034100 16034303 -266159361 + MIR SINE MIR 19 250 -12 513 247 60 67 chr1 16034527 16034677 -266158987 + MIR3 SINE MIR 37 185 -23 289 156 25 188 chr1 16034768 16034928 -266158736 + L1ME3A LINE L1 5615 5748 -373 360 226 0 60 chr1 16034943 16035027 -266158637 + MER21B LTR ERV1 12 90 -773 995 234 173 0 chr1 16035050 16035298 -266158366 + MER21B LTR ERV1 20 310 -553 2088 196 56 5 chr1 16035491 16035905 -266157759 + MER21B LTR ERV1 317 751 -112 827 124 0 0 chr1 16035959 16036072 -266157592 + FLAM_A SINE Alu 4 116 -17 2398 268 70 15 chr1 16036193 16037140 -266156524 - L2 LINE L2 -20 3293 2302 321 26 0 0 chr1 16037290 16037328 -266156336 + (CA)n Simple_repeat Simple_repeat 1 38 0 261 238 88 0 chr1 16037328 16037408 -266156256 - L1ME LINE L1 -516 5605 5519 309 209 58 70 chr1 16038215 16038301 -266155363 + L1ME3A LINE L1 5839 5923 -247 182 263 0 0 chr1 16038679 16038717 -266154947 - L2 LINE L2 -217 3055 3018 412 282 51 62 chr1 16038785 16038980 -266154684 - L2 LINE L2 -457 2857 2665 1714 164 0 30 chr1 16039164 16039463 -266154201 + AluJb SINE Alu 1 290 -22 326 23 23 0 chr1 16039520 16039563 -266154101 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 267 103 0 0 chr1 16040037 16040076 -266153588 + (T)n Simple_repeat Simple_repeat 1 39 0 530 243 86 63 chr1 16040175 16040284 -266153380 - MIR SINE MIR -4 258 153 2132 98 0 10 chr1 16040284 16040580 -266153084 - AluSg SINE Alu -10 300 8 2034 121 3 0 chr1 16040586 16040883 -266152781 - AluSx SINE Alu -14 298 1 530 243 86 63 chr1 16040883 16040988 -266152676 - MIR SINE MIR -113 149 32 22 56 0 0 chr1 16041730 16041766 -266151898 + AT_rich Low_complexity Low_complexity 1 36 0 312 250 136 108 chr1 16041809 16042133 -266151531 + L1M4 LINE L1 4991 5323 -823 493 323 22 35 chr1 16042319 16042545 -266151119 - L2 LINE L2 -908 2406 2184 1755 125 49 40 chr1 16042579 16042674 -266150990 + MER44D DNA MER2_type 8 101 -2390 2485 42 0 13 chr1 16042674 16042980 -266150684 + AluY SINE Alu 1 302 -9 1755 125 49 40 chr1 16042980 16043213 -266150451 + MER44D DNA MER2_type 101 609 0 316 293 81 0 chr1 16043592 16043691 -266149973 - L1ME LINE L1 -324 5846 5740 3136 193 106 61 chr1 16043748 16044008 -266149656 + Charlie1a DNA MER1_type 1 248 -2513 2258 92 0 0 chr1 16044008 16044311 -266149353 - AluSx SINE Alu -9 303 1 3136 193 106 61 chr1 16044311 16044743 -266148921 + Charlie1a DNA MER1_type 248 659 -2102 1664 132 25 65 chr1 16044743 16044937 -266148727 - AluJb SINE Alu 0 312 135 1707 118 16 0 chr1 16044937 16045183 -266148481 + AluSx SINE Alu 46 295 -17 1664 132 25 65 chr1 16045183 16045313 -266148351 - AluJb SINE Alu -177 135 1 3136 193 106 61 chr1 16045313 16045347 -266148317 + Charlie1a DNA MER1_type 659 690 -2071 2109 99 3 14 chr1 16045347 16045641 -266148023 + AluSg SINE Alu 1 291 -19 3136 193 106 61 chr1 16045641 16045751 -266147913 + Charlie1a DNA MER1_type 690 877 -578 232 174 0 0 chr1 16045760 16045806 -266147858 + T-rich Low_complexity Low_complexity 1 46 0 2142 102 0 7 chr1 16045908 16046211 -266147453 - AluSx SINE Alu -11 301 1 351 182 26 68 chr1 16046211 16046371 -266147293 - L1M4 LINE L1 -801 5345 5201 2309 86 3 0 chr1 16046371 16046675 -266146989 - AluSq SINE Alu -8 305 1 351 182 26 68 chr1 16046675 16046695 -266146969 - L1M4 LINE L1 -945 5201 5182 1627 216 52 38 chr1 16046702 16047063 -266146601 - L1ME3A LINE L1 0 6170 5799 1964 142 3 0 chr1 16047063 16047365 -266146299 + AluJb SINE Alu 1 303 -9 1627 216 52 38 chr1 16047365 16047499 -266146165 - L1ME3A LINE L1 -371 5799 5668 244 257 56 51 chr1 16047477 16047691 -266145973 - L1M4 LINE L1 -961 5185 4971 * 314 226 48 110 chr1 16047777 16047923 -266145741 - L1M4 LINE L1 -1462 4684 4548 289 257 66 11 chr1 16048012 16048195 -266145469 - L1M4 LINE L1 -1593 4553 4361 1844 127 7 39 chr1 16048235 16048542 -266145122 + AluSx SINE Alu 1 297 -15 2274 87 3 0 chr1 16048544 16048842 -266144822 + AluSg SINE Alu 1 299 -11 2268 88 3 13 chr1 16048847 16049153 -266144511 + AluSp SINE Alu 1 303 -10 671 159 84 0 chr1 16049163 16049270 -266144394 + FLAM_C SINE Alu 2 117 -16 21 0 0 0 chr1 16049270 16049291 -266144373 + AT_rich Low_complexity Low_complexity 1 21 0 1366 273 46 46 chr1 16049334 16049362 -266144302 - L1M4 LINE L1 -1800 4346 4319 1784 93 52 11 chr1 16049362 16049665 -266143999 - AluSx SINE Alu 0 314 1 1366 273 46 46 chr1 16049665 16050302 -266143362 - L1M4 LINE L1 -1826 4320 3679 226 297 88 0 chr1 16050314 16050405 -266143259 - L1M4 LINE L1 -2533 3613 3515 541 243 92 69 chr1 16050464 16050876 -266142788 - L1M4 LINE L1 -2812 3334 2933 958 179 12 0 chr1 16050876 16051038 -266142626 - AluJo SINE Alu -2 300 137 541 243 92 69 chr1 16051038 16051051 -266142613 - L1M4 LINE L1 -3213 2933 2922 1524 142 161 0 chr1 16051051 16051312 -266142352 - AluSq SINE Alu 0 303 1 1782 159 0 19 chr1 16051313 16051628 -266142036 - AluJo SINE Alu -3 309 1 688 200 0 15 chr1 16051638 16051773 -266141891 - AluJo SINE Alu -169 133 1 541 243 92 69 chr1 16051773 16051898 -266141766 - L1M4 LINE L1 -3232 2914 2757 2049 117 0 0 chr1 16052062 16052379 -266141285 - AluSg SINE Alu 0 317 1 2544 70 3 0 chr1 16052923 16053225 -266140439 + AluSp SINE Alu 1 303 -10 328 246 14 0 chr1 16053322 16053391 -266140273 - L2 LINE L2 -218 3054 2985 613 289 23 28 chr1 16053873 16054091 -266139573 + L2 LINE L2 2514 2730 -584 * 633 257 257 39 chr1 16054078 16054409 -266139255 + L2 LINE L2 2911 3313 0 2212 114 3 7 chr1 16054544 16054843 -266138821 + AluSx SINE Alu 1 298 -14 667 163 0 0 chr1 16054890 16054988 -266138676 + AluJ/FLAM SINE Alu 4 101 -211 35 54 0 0 chr1 16054996 16055052 -266138612 + AT_rich Low_complexity Low_complexity 1 56 0 2040 134 19 10 chr1 16055616 16055923 -266137741 - AluJb SINE Alu -2 310 1 2123 132 3 3 chr1 16056388 16056684 -266136980 + AluSq SINE Alu 1 296 -17 2167 86 6 71 chr1 16056687 16057013 -266136651 + AluY SINE Alu 1 305 -6 2192 101 47 3 chr1 16057670 16057968 -266135696 - AluSq SINE Alu 0 313 3 2417 102 0 0 chr1 16057971 16058276 -266135388 - AluSx SINE Alu -7 305 1 272 316 31 0 chr1 16058355 16058453 -266135211 + L2 LINE L2 3172 3272 0 203 290 70 70 chr1 16058479 16058579 -266135085 + L2 LINE L2 3141 3240 -32 1990 144 3 7 chr1 16059742 16060041 -266133623 + AluJo SINE Alu 1 298 -14 186 133 0 0 chr1 16060418 16060448 -266133216 + (TG)n Simple_repeat Simple_repeat 1 30 0 2357 90 3 31 chr1 16062769 16063091 -266130573 - AluSp SINE Alu 0 313 1 850 173 0 0 chr1 16063514 16063647 -266130017 - FLAM_C SINE Alu -5 138 6 1816 77 0 0 chr1 16065088 16065308 -266128356 + AluSg/x SINE Alu 83 302 -8 290 75 38 0 chr1 16065327 16065380 -266128284 + T-rich Low_complexity Low_complexity 2 56 0 854 54 99 0 chr1 16065380 16065491 -266128173 - AluSq/x SINE Alu -191 122 1 2420 104 0 0 chr1 16065494 16065801 -266127863 - AluSx SINE Alu -5 307 1 643 92 0 0 chr1 16065961 16066048 -266127616 - AluSg/x SINE Alu -12 297 211 2326 92 7 3 chr1 16066117 16066410 -266127254 + AluSq SINE Alu 1 294 -19 199 265 10 78 chr1 16067356 16067458 -266126206 + MIR SINE MIR 125 219 -43 2309 104 3 3 chr1 16067520 16067819 -266125845 - AluSx SINE Alu -13 299 1 252 299 245 31 chr1 16068089 16068444 -266125220 - L2 LINE L2 -5 3267 2837 435 212 85 42 chr1 16068638 16068756 -266124908 - L2 LINE L2 -1 3312 3190 1631 156 25 21 chr1 16068871 16069197 -266124467 - AluJb SINE Alu 0 327 1 2231 87 17 23 chr1 16069247 16069546 -266124118 - AluSp SINE Alu -16 297 1 2271 100 0 0 chr1 16069579 16069869 -266123795 - AluSg SINE Alu -20 290 1 2506 83 0 3 chr1 16069879 16070191 -266123473 - AluY SINE Alu 0 311 1 2460 81 0 0 chr1 16070434 16070731 -266122933 + AluSg SINE Alu 1 297 -13 313 310 152 6 chr1 16071038 16071209 -266122455 - MIR SINE MIR -9 253 58 2472 88 0 0 chr1 16071439 16071736 -266121928 - AluSx SINE Alu -15 297 1 2404 106 3 0 chr1 16073343 16073646 -266120018 - AluSx SINE Alu -8 304 1 693 107 39 29 chr1 16073723 16073826 -266119838 + AluJb SINE Alu 186 289 -23 2383 100 3 0 chr1 16073836 16074145 -266119519 + AluSp SINE Alu 2 311 -2 501 110 0 0 chr1 16074147 16074220 -266119444 + FLAM_A SINE Alu 62 134 -8 1566 198 51 3 chr1 16074222 16074515 -266119149 + AluJo SINE Alu 1 307 -5 954 134 89 59 chr1 16074580 16074734 -266118930 + MER3 DNA MER1_type 2 165 -44 2023 91 80 4 chr1 16074734 16075010 -266118654 + AluSq SINE Alu 1 297 -16 954 134 89 59 chr1 16075010 16075057 -266118607 + MER3 DNA MER1_type 165 209 0 345 280 88 96 chr1 16075081 16075128 -266118536 - MIR SINE MIR 0 262 216 2523 80 10 0 chr1 16075128 16075430 -266118234 + AluSq SINE Alu 1 305 -8 345 280 88 96 chr1 16075430 16075643 -266118021 - MIR SINE MIR -46 216 4 2194 102 0 0 chr1 16075857 16076132 -266117532 + AluSx SINE Alu 1 275 -37 186 43 0 0 chr1 16076136 16076159 -266117505 + (CA)n Simple_repeat Simple_repeat 1 23 0 900 187 106 0 chr1 16076599 16076797 -266116867 - MER20 DNA MER1_type 0 219 1 340 299 219 0 chr1 16076846 16076983 -266116681 + MIR SINE MIR 95 261 -1 2282 69 7 33 chr1 16077285 16077590 -266116074 - AluSg SINE Alu -13 297 1 27 29 0 0 chr1 16078050 16078084 -266115580 + GC_rich Low_complexity Low_complexity 1 34 0 862 105 40 8 chr1 16078420 16078544 -266115120 - AluJo SINE Alu -176 136 9 203 133 0 0 chr1 16078684 16078714 -266114950 + (CTAG)n Simple_repeat Simple_repeat 3 32 0 1118 131 0 0 chr1 16078714 16078867 -266114797 - FRAM SINE Alu -13 153 1 2441 57 0 0 chr1 16078909 16079235 -266114429 + AluY SINE Alu 1 326 0 2371 71 10 3 chr1 16079473 16079767 -266113897 + AluY SINE Alu 1 296 -15 237 240 0 0 chr1 16080055 16080105 -266113559 - L2 LINE L2 -1 3271 3222 1209 165 0 25 chr1 16080768 16080968 -266112696 - AluJo SINE Alu -17 295 101 1009 188 0 0 chr1 16080968 16081133 -266112531 + AluJb SINE Alu 5 169 -143 3416 132 87 19 chr1 16081133 16081894 -266111770 - LTR12 LTR ERV1 0 714 1 809 168 7 7 chr1 16081894 16082031 -266111633 + AluJb SINE Alu 166 302 -10 632 231 0 17 chr1 16082031 16082148 -266111516 - AluJo SINE Alu -196 116 2 467 144 7 122 chr1 16082175 16082248 -266111416 + Charlie1a DNA MER1_type 1332 1383 -1378 1694 142 20 33 chr1 16082248 16082550 -266111114 - AluJo SINE Alu -14 298 1 467 144 7 122 chr1 16082550 16082615 -266111049 + Charlie1a DNA MER1_type 1383 1454 -1 306 243 65 47 chr1 16082624 16082731 -266110933 + MER5A DNA MER1_type 1 109 -80 2109 122 3 0 chr1 16082744 16083038 -266110626 + AluSx SINE Alu 1 295 -17 1863 162 0 29 chr1 16083045 16083354 -266110310 + AluJo SINE Alu 1 300 -12 2351 82 0 55 chr1 16083363 16083691 -266109973 + AluSg SINE Alu 1 310 0 2392 103 0 6 chr1 16083697 16084009 -266109655 + AluSg SINE Alu 1 310 0 2224 101 0 17 chr1 16084232 16084366 -266109298 + AluSx SINE Alu 3 138 -172 2393 104 3 0 chr1 16084366 16084664 -266109000 + AluSp SINE Alu 1 299 -14 2224 101 0 17 chr1 16084664 16084842 -266108822 + AluSx SINE Alu 138 310 0 657 168 0 9 chr1 16084883 16084990 -266108674 + AluJo SINE Alu 2 107 -205 1276 111 11 0 chr1 16085006 16085186 -266108478 - AluSg/x SINE Alu -8 302 121 23 68 0 0 chr1 16085186 16085230 -266108434 + AT_rich Low_complexity Low_complexity 1 44 0 2380 104 0 13 chr1 16085914 16086230 -266107434 + AluSx SINE Alu 1 312 0 1225 162 13 40 chr1 16086241 16086469 -266107195 + AluJo SINE Alu 82 303 -9 646 164 31 16 chr1 16086470 16086594 -266107070 - MER31A LTR ERV1 -15 470 345 877 231 74 57 chr1 16086594 16087114 -266106550 + MER4C LTR ERV1 1 465 0 247 136 23 0 chr1 16087114 16087158 -266106506 - MER31A LTR ERV1 -137 348 304 236 67 0 0 chr1 16087160 16087190 -266106474 - MER31A LTR ERV1 -453 32 3 2294 107 0 0 chr1 16087190 16087488 -266106176 + AluSx SINE Alu 1 298 -14 2199 123 3 3 chr1 16087560 16087862 -266105802 + AluSx SINE Alu 1 302 -10 983 104 8 8 chr1 16087862 16087996 -266105668 + AluSq/x SINE Alu 2 135 -178 1860 142 3 27 chr1 16087996 16088329 -266105335 + AluSx SINE Alu 1 326 0 2387 85 3 0 chr1 16088639 16088932 -266104732 - AluSg SINE Alu -16 294 1 1939 231 37 15 chr1 16089552 16090015 -266103649 + MER21B LTR ERV1 255 727 -136 1341 198 88 53 chr1 16090015 16090360 -266103304 + MSTB1 LTR MaLR 1 363 -69 2254 108 7 7 chr1 16090360 16090667 -266102997 - AluSx SINE Alu -5 307 1 1341 198 88 53 chr1 16090667 16090720 -266102944 + MSTB1 LTR MaLR 363 413 -19 1818 133 0 4 chr1 16091004 16091286 -266102378 - AluSx SINE Alu 0 309 29 549 129 72 36 chr1 16091434 16091573 -266102091 - L1MB8 LINE L1 -1 6177 6034 201 238 138 50 chr1 16091770 16091850 -266101814 - L2 LINE L2 -1 3271 3185 1520 229 42 42 chr1 16091971 16092123 -266101541 + L1MEc LINE L1 36 187 -6209 2395 72 0 0 chr1 16092123 16092415 -266101249 + AluSg SINE Alu 1 292 -18 1520 229 42 42 chr1 16092415 16092720 -266100944 + L1MEc LINE L1 186 493 -5903 1643 141 4 15 chr1 16092746 16093008 -266100656 - MER1B DNA MER1_type -80 259 1 629 218 34 20 chr1 16093016 16093155 -266100509 + L1MEc LINE L1 527 670 -5726 2264 109 3 0 chr1 16093155 16093457 -266100207 - AluSx SINE Alu -8 304 2 2102 110 7 3 chr1 16093492 16093782 -266099882 - AluSg SINE Alu -14 296 6 2299 95 3 0 chr1 16093791 16094086 -266099578 - AluSq SINE Alu -17 296 1 428 136 12 37 chr1 16094353 16094434 -266099230 + MER5A DNA MER1_type 28 106 -83 2426 68 0 0 chr1 16094456 16094748 -266098916 + AluSg SINE Alu 1 292 -18 1583 132 22 22 chr1 16094817 16095089 -266098575 + MER7A DNA MER2_type 1 270 -76 858 180 0 13 chr1 16095089 16095239 -266098425 + AluJo SINE Alu 1 148 -164 1611 137 24 103 chr1 16095242 16095571 -266098093 + AluJo SINE Alu 6 308 -4 255 186 171 0 chr1 16095571 16095641 -266098023 + MER7A DNA MER2_type 254 335 -1 2106 71 32 74 chr1 16095850 16096161 -266097503 + AluSg1 SINE Alu 1 298 -11 1634 104 69 9 chr1 16097167 16097398 -266096266 + AluSx SINE Alu 1 245 -67 1051 88 15 0 chr1 16097530 16097667 -266095997 + AluSx SINE Alu 6 144 -168 1232 123 6 0 chr1 16098457 16098636 -266095028 + AluSx SINE Alu 119 298 -12 577 286 39 22 chr1 16098672 16098816 -266094848 + MIR SINE MIR 66 215 -47 745 272 78 4 chr1 16098816 16099059 -266094605 + MIR SINE MIR 2 262 0 577 286 39 22 chr1 16099059 16099096 -266094568 + MIR SINE MIR 215 250 -12 346 275 295 0 chr1 16099634 16099834 -266093830 + L2 LINE L2 2448 2706 -608 974 123 16 102 chr1 16099837 16099902 -266093762 - L1MB8 LINE L1 -1 6177 6108 2175 108 3 3 chr1 16099902 16100199 -266093465 + AluSx SINE Alu 1 297 -15 974 123 16 102 chr1 16100199 16100377 -266093287 - L1MB8 LINE L1 -70 6108 5955 2408 88 0 7 chr1 16100377 16100685 -266092979 + AluY SINE Alu 2 307 -4 26 0 0 0 chr1 16100723 16100749 -266092915 + AT_rich Low_complexity Low_complexity 1 26 0 1574 156 24 63 chr1 16100750 16100904 -266092760 - L1MB8 LINE L1 -217 5961 5802 352 68 14 176 chr1 16100904 16100944 -266092720 - U7 snRNA snRNA 0 63 39 2434 94 0 3 chr1 16100944 16101253 -266092411 - AluSg SINE Alu -2 308 1 352 68 14 176 chr1 16101253 16101286 -266092378 - U7 snRNA snRNA -24 39 2 1574 156 24 63 chr1 16101286 16101509 -266092155 - L1MB8 LINE L1 -376 5802 5599 2198 140 0 0 chr1 16101510 16101818 -266091846 - AluSx SINE Alu -4 308 1 779 156 23 0 chr1 16101826 16101954 -266091710 - FLAM_C SINE Alu -7 136 6 1151 119 0 35 chr1 16101958 16102089 -266091575 - L1MB8 LINE L1 -574 5610 5487 2088 132 3 28 chr1 16102089 16102271 -266091393 - AluSx SINE Alu -1 311 139 2412 108 0 0 chr1 16102271 16102578 -266091086 - AluSg SINE Alu -3 307 1 2088 132 3 28 chr1 16102578 16102714 -266090950 - AluSx SINE Alu -173 139 1 1151 119 0 35 chr1 16102714 16102783 -266090881 - L1MB8 LINE L1 -697 5487 5417 1045 203 127 62 chr1 16102785 16103125 -266090539 - MLT1G3 LTR MaLR -41 489 128 1379 175 82 11 chr1 16103561 16103829 -266089835 + AluJo SINE Alu 5 291 -21 2371 89 0 0 chr1 16103835 16104127 -266089537 + AluSg SINE Alu 1 292 -18 2562 75 3 0 chr1 16104208 16104516 -266089148 + AluSp SINE Alu 3 311 -2 2096 126 10 0 chr1 16104661 16104954 -266088710 - AluSx SINE Alu -16 296 1 2237 111 0 3 chr1 16105264 16105561 -266088103 - AluSg SINE Alu -14 296 1 825 191 31 25 chr1 16105570 16105732 -266087932 - AluJb SINE Alu -21 291 129 2108 129 0 0 chr1 16105742 16106037 -266087627 + AluSq SINE Alu 1 295 -18 2138 134 3 0 chr1 16106046 16106352 -266087312 + AluSx SINE Alu 1 307 -5 1033 143 12 0 chr1 16106352 16106513 -266087151 + AluSg/x SINE Alu 132 294 -16 22 0 0 0 chr1 16106513 16106535 -266087129 + AT_rich Low_complexity Low_complexity 1 22 0 819 139 0 0 chr1 16106535 16106650 -266087014 - FLAM_C SINE Alu -18 125 11 30 27 0 0 chr1 16106764 16106801 -266086863 + AT_rich Low_complexity Low_complexity 1 37 0 2405 89 0 22 chr1 16107021 16107336 -266086328 - AluSg SINE Alu -2 308 1 2445 94 0 7 chr1 16107336 16107645 -266086019 - AluSq SINE Alu -6 307 1 698 195 0 0 chr1 16108115 16108233 -266085431 + FLAM_C SINE Alu 1 118 -15 1391 156 18 0 chr1 16108280 16108498 -266085166 + AluJo SINE Alu 87 308 -4 548 257 27 9 chr1 16108516 16108661 -266085003 - MLT1G1 LTR MaLR -398 151 3 343 175 117 89 chr1 16108884 16109016 -266084648 + MLT1J LTR MaLR 57 226 -285 300 272 88 29 chr1 16109085 16109221 -266084443 + MLT1L LTR MaLR 466 609 -6 2475 79 0 0 chr1 16109236 16109540 -266084124 - AluSg SINE Alu -6 304 1 214 226 11 97 chr1 16109834 16109927 -266083737 - L2 LINE L2 -12 3260 3176 343 268 142 0 chr1 16110167 16110294 -266083370 + L2 LINE L2 3169 3313 0 181 213 0 40 chr1 16110394 16110469 -266083195 + CT-rich Low_complexity Low_complexity 1 72 0 33 0 0 0 chr1 16110534 16110567 -266083097 + GC_rich Low_complexity Low_complexity 1 33 0 233 116 0 23 chr1 16110770 16110813 -266082851 + (CCGGG)n Simple_repeat Simple_repeat 1 42 0 2354 89 0 16 chr1 16112253 16112566 -266081098 - AluSx SINE Alu -2 310 3 2299 65 55 0 chr1 16112598 16112891 -266080773 - AluY SINE Alu -2 309 1 286 228 158 9 chr1 16113761 16113875 -266079789 - Charlie7 DNA MER1_type 0 2612 2482 247 171 0 100 chr1 16113986 16114056 -266079608 - Charlie7 DNA MER1_type -2510 102 40 1669 182 28 3 chr1 16114542 16114828 -266078836 - AluJb SINE Alu -19 293 1 461 307 53 13 chr1 16114840 16115065 -266078599 - L1ME LINE L1 -303 5818 5585 701 232 212 8 chr1 16115216 16115466 -266078198 - AluYa5 SINE Alu 0 301 1 1676 180 61 10 chr1 16116524 16116700 -266076964 - AluJo SINE Alu -2 310 112 234 0 0 0 chr1 16116700 16116726 -266076938 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1676 180 61 10 chr1 16116726 16116844 -266076820 - AluJo SINE Alu -200 112 1 2043 80 40 14 chr1 16116921 16117217 -266076447 + AluY SINE Alu 1 303 0 1705 156 13 48 chr1 16117598 16117849 -266075815 - AluJb SINE Alu -3 309 70 674 98 130 0 chr1 16117849 16117972 -266075692 - MER85 DNA T2_type 0 139 1 1705 156 13 48 chr1 16117972 16118035 -266075629 - AluJb SINE Alu -242 70 6 284 228 93 62 chr1 16118300 16118462 -266075202 - MIR3 SINE MIR 0 208 42 2038 106 22 0 chr1 16118786 16119059 -266074605 - AluSg SINE Alu -31 279 1 329 309 87 0 chr1 16119276 16119402 -266074262 - L2 LINE L2 0 3272 3136 361 246 215 35 chr1 16119511 16119767 -266073897 - L2 LINE L2 -337 2977 2676 491 313 112 21 chr1 16119989 16120222 -266073442 + MIR SINE MIR 3 256 -6 1195 173 103 15 chr1 16121846 16122117 -266071547 - L1MB7 LINE L1 0 6184 5890 2389 96 0 3 chr1 16122456 16122757 -266070907 + AluSx SINE Alu 1 300 -12 2355 108 0 0 chr1 16122869 16123174 -266070490 - AluSq SINE Alu -8 305 1 2461 84 0 0 chr1 16123976 16124285 -266069379 - AluY SINE Alu -2 309 1 890 191 0 0 chr1 16124411 16124558 -266069106 - AluJo SINE Alu -165 147 1 1040 230 68 32 chr1 16124706 16124948 -266068716 - L1ME2 LINE L1 -21 6143 5886 2355 94 0 0 chr1 16124948 16125246 -266068418 - AluSg SINE Alu -12 298 1 1040 230 68 32 chr1 16125246 16125312 -266068352 - L1ME2 LINE L1 -278 5886 5824 1991 87 4 4 chr1 16125436 16125689 -266067975 + AluSq SINE Alu 44 296 -17 1894 136 3 51 chr1 16126055 16126371 -266067293 - AluJo SINE Alu -11 301 1 365 325 17 8 chr1 16127254 16127371 -266066293 + MER5B DNA MER1_type 1 118 -60 1872 171 10 7 chr1 16127665 16127974 -266065690 - AluJb SINE Alu -2 310 1 391 213 27 0 chr1 16127998 16128073 -266065591 - AluS SINE Alu -226 77 1 1700 143 81 7 chr1 16128120 16128392 -266065272 + AluJo SINE Alu 11 302 -10 2157 100 4 0 chr1 16128567 16128847 -266064817 - AluSx SINE Alu -31 281 1 1442 170 64 14 chr1 16129279 16129562 -266064102 - AluJb SINE Alu -13 299 3 1586 165 50 0 chr1 16129642 16129902 -266063762 - AluJb SINE Alu -39 273 1 647 244 0 42 chr1 16129911 16130079 -266063585 - MER58A DNA MER1_type -17 207 47 653 156 0 150 chr1 16130349 16130516 -266063148 - FLAM_C SINE Alu 0 143 2 2115 98 31 0 chr1 16130523 16130810 -266062854 - AluSx SINE Alu -16 296 1 1860 119 4 4 chr1 16131673 16131933 -266061731 - AluSx SINE Alu -8 304 45 1220 187 27 0 chr1 16132623 16132842 -266060822 - AluJo SINE Alu -23 289 65 1730 143 13 58 chr1 16132867 16133175 -266060489 + AluJb SINE Alu 1 294 -18 353 279 25 62 chr1 16133356 16133517 -266060147 - MIR SINE MIR -3 259 105 249 333 94 7 chr1 16133509 16133654 -266060010 - MIR SINE MIR -41 167 9 * 1967 152 3 3 chr1 16134332 16134628 -266059036 + AluSx SINE Alu 1 296 -16 2343 109 0 0 chr1 16134815 16135128 -266058536 + AluSq SINE Alu 1 313 0 659 186 26 0 chr1 16135642 16135755 -266057909 - FLAM_C SINE Alu -17 116 1 1430 117 0 69 chr1 16135784 16135929 -266057735 + AluSx SINE Alu 1 126 -186 2402 78 7 0 chr1 16135929 16136224 -266057440 + AluY SINE Alu 2 298 -13 1430 117 0 69 chr1 16136224 16136309 -266057355 + AluSx SINE Alu 126 215 -97 1995 225 118 75 chr1 16137043 16137724 -266055940 - HAL1 LINE L1 -121 2386 1736 2732 39 0 0 chr1 16137724 16138035 -266055629 - AluY SINE Alu 0 311 1 1936 111 17 20 chr1 16138037 16138334 -266055330 - AluSx SINE Alu -16 296 1 1995 225 118 75 chr1 16138334 16138729 -266054935 - HAL1 LINE L1 -771 1736 1359 1638 178 17 13 chr1 16138729 16139027 -266054637 + AluJo SINE Alu 1 299 -13 1995 225 118 75 chr1 16139027 16139547 -266054117 - HAL1 LINE L1 -1148 1359 863 2498 80 0 0 chr1 16139547 16139846 -266053818 + AluSq SINE Alu 1 299 -14 1995 225 118 75 chr1 16139846 16139942 -266053722 - HAL1 LINE L1 -1644 863 4 315 299 45 13 chr1 16139951 16140108 -266053556 - L1ME4a LINE L1 -1 6120 5959 2263 119 0 3 chr1 16140279 16140591 -266053073 - AluSx SINE Alu -1 311 1 292 252 47 19 chr1 16140618 16140725 -266052939 - L1ME4a LINE L1 -435 5686 5577 1716 176 0 10 chr1 16140826 16141115 -266052549 + AluSx SINE Alu 5 290 -22 342 278 73 7 chr1 16141495 16141646 -266052018 + L1M4 LINE L1 4489 4649 -1497 590 117 11 0 chr1 16141904 16141998 -266051666 + FLAM_C SINE Alu 43 137 -6 780 159 0 8 chr1 16142094 16142220 -266051444 + FLAM_C SINE Alu 2 126 -17 2127 126 7 0 chr1 16142224 16142525 -266051139 + AluSx SINE Alu 1 303 -9 2144 120 0 0 chr1 16142531 16142814 -266050850 + AluSp SINE Alu 1 283 -30 266 191 0 0 chr1 16143512 16143554 -266050110 - 5S rRNA rRNA -79 42 1 1572 171 73 11 chr1 16143606 16143881 -266049783 + AluJo SINE Alu 2 293 -19 2317 68 4 0 chr1 16143989 16144295 -266049369 - AluY SINE Alu 0 307 1 1885 111 0 0 chr1 16144517 16144761 -266048903 - AluSx SINE Alu -68 244 1 1677 142 59 31 chr1 16145201 16145490 -266048174 - AluJo SINE Alu -5 307 11 1899 116 10 58 chr1 16145538 16145684 -266047980 + AluSx SINE Alu 1 126 -186 2480 80 0 6 chr1 16145684 16145997 -266047667 + AluY SINE Alu 1 311 0 1899 116 10 58 chr1 16145997 16146161 -266047503 + AluSx SINE Alu 126 296 -16 293 0 27 0 chr1 16146396 16146433 -266047231 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 647 169 42 49 chr1 16146437 16146579 -266047085 - AluJb SINE Alu -31 281 141 26 30 0 0 chr1 16146670 16146703 -266046961 + AT_rich Low_complexity Low_complexity 1 33 0 287 128 0 0 chr1 16146703 16146742 -266046922 - AluJo SINE Alu -11 291 253 1123 213 0 0 chr1 16146742 16146939 -266046725 - AluJo SINE Alu -115 197 1 1758 171 7 20 chr1 16147517 16147816 -266045848 + AluJb SINE Alu 5 299 -13 1590 187 27 23 chr1 16148479 16148612 -266045052 + AluJb SINE Alu 1 132 -180 2436 91 0 3 chr1 16148612 16148919 -266044745 + AluSx SINE Alu 1 306 -6 1590 187 27 23 chr1 16148919 16149085 -266044579 + AluJb SINE Alu 132 301 -11 602 231 0 0 chr1 16149165 16149282 -266044382 - FLAM_C SINE Alu -15 118 2 2274 111 7 0 chr1 16151285 16151592 -266042072 - AluSx SINE Alu -3 309 1 2091 104 31 0 chr1 16151623 16151912 -266041752 + AluSp SINE Alu 1 298 -15 207 344 144 25 chr1 16152475 16152635 -266041029 - MER5A DNA MER1_type -4 185 7 467 157 157 0 chr1 16157218 16157307 -266036357 - FLAM_A SINE Alu -17 125 23 1587 103 0 19 chr1 16157380 16157594 -266036070 + AluSg/x SINE Alu 91 300 -12 2424 93 0 0 chr1 16158122 16158423 -266035241 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr1 16158859 16158882 -266034782 + AT_rich Low_complexity Low_complexity 1 23 0 494 238 82 0 chr1 16159773 16159895 -266033769 - L2 LINE L2 -1 3271 3140 2206 103 14 0 chr1 16160071 16160361 -266033303 + AluSg SINE Alu 1 294 -16 1580 152 76 4 chr1 16162410 16162673 -266030991 + AluSg SINE Alu 1 282 -28 906 216 129 4 chr1 16162685 16162917 -266030747 + MIR SINE MIR 2 262 0 670 244 171 13 chr1 16162992 16163226 -266030438 - MLT1J1 LTR MaLR -115 331 61 2245 112 14 0 chr1 16163570 16163866 -266029798 + AluSc SINE Alu 1 300 -9 2391 101 0 0 chr1 16164378 16164674 -266028990 - AluSg SINE Alu -14 296 1 924 148 6 41 chr1 16165242 16165411 -266028253 + FRAM SINE Alu 1 163 -13 1134 82 0 0 chr1 16165411 16165546 -266028118 + AluSq/x SINE Alu 1 135 -178 2164 128 0 0 chr1 16165546 16165842 -266027822 + AluSg SINE Alu 1 296 -14 1386 146 29 38 chr1 16165865 16166020 -266027644 - AluSx SINE Alu -18 294 140 2232 105 10 7 chr1 16166020 16166325 -266027339 - AluSq SINE Alu -7 306 1 1386 146 29 38 chr1 16166325 16166408 -266027256 - AluSx SINE Alu -172 140 58 3502 115 22 51 chr1 16166408 16166698 -266026966 - HSMAR2 DNA Mariner -686 616 319 1452 166 64 42 chr1 16166698 16166852 -266026812 - AluJb SINE Alu -23 289 125 2315 103 3 0 chr1 16166852 16167143 -266026521 - AluSp SINE Alu -21 292 1 1452 166 64 42 chr1 16167143 16167271 -266026393 - AluJb SINE Alu -187 125 1 3502 115 22 51 chr1 16167271 16167452 -266026212 - HSMAR2 DNA Mariner -983 319 165 2053 99 88 3 chr1 16167452 16167736 -266025928 - AluSc SINE Alu -1 308 1 3502 115 22 51 chr1 16167736 16167889 -266025775 - HSMAR2 DNA Mariner -1137 165 9 719 220 155 26 chr1 16168198 16168291 -266025373 + L2 LINE L2 2365 2445 -869 2260 114 0 7 chr1 16168291 16168597 -266025067 + AluSq SINE Alu 1 304 -9 719 220 155 26 chr1 16168597 16168767 -266024897 + L2 LINE L2 2445 2662 -652 1024 123 6 6 chr1 16168769 16168948 -266024716 + (CCTA)n Simple_repeat Simple_repeat 1 179 0 1212 106 0 0 chr1 16168960 16169139 -266024525 + (CCTA)n Simple_repeat Simple_repeat 2 180 0 893 242 136 8 chr1 16169139 16169486 -266024178 + L2 LINE L2 2633 3026 -287 29 70 0 0 chr1 16169512 16169569 -266024095 + AT_rich Low_complexity Low_complexity 1 57 0 801 134 25 0 chr1 16169580 16169699 -266023965 - FRAM SINE Alu -33 143 22 758 282 60 39 chr1 16169820 16170074 -266023590 + L2 LINE L2 3024 3286 -27 3574 145 36 0 chr1 16170074 16170632 -266023032 + LTR19B LTR ERV1 3 580 0 758 282 60 39 chr1 16170632 16170661 -266023003 + L2 LINE L2 3286 3313 0 1723 196 0 28 chr1 16170891 16171208 -266022456 - AluJo SINE Alu -4 308 1 2440 137 22 63 chr1 16171362 16171413 -266022251 - MSTA LTR MaLR 0 428 376 2278 114 0 0 chr1 16171413 16171710 -266021954 - AluSx SINE Alu -13 299 3 2440 137 22 63 chr1 16171710 16172052 -266021612 - MSTA LTR MaLR -52 376 53 2253 107 13 0 chr1 16172052 16172360 -266021304 - AluSx SINE Alu 0 312 1 2440 137 22 63 chr1 16172360 16172411 -266021253 - MSTA LTR MaLR -375 53 1 654 108 0 21 chr1 16172474 16172567 -266021097 - AluS SINE Alu -220 93 3 312 329 48 21 chr1 16172701 16172966 -266020698 - MLT1J2 LTR MaLR -86 364 61 1428 163 113 25 chr1 16173011 16173294 -266020370 - AluSg SINE Alu -2 308 1 300 267 114 42 chr1 16173294 16173483 -266020181 - L2 LINE L2 -317 2955 2756 547 136 0 0 chr1 16173488 16173569 -266020095 + AluSg/x SINE Alu 211 291 -21 2140 132 0 7 chr1 16173571 16173881 -266019783 + AluSg SINE Alu 1 308 -2 567 246 0 36 chr1 16174122 16174260 -266019404 - FLAM_A SINE Alu 0 133 1 1581 166 46 14 chr1 16175065 16175348 -266018316 + AluJo SINE Alu 1 292 -20 2024 85 0 8 chr1 16175352 16175610 -266018054 + AluSx SINE Alu 44 299 -13 1032 145 0 13 chr1 16175610 16175805 -266017859 + AluSg/x SINE Alu 132 310 0 45 111 0 0 chr1 16177442 16177641 -266016023 + GC_rich Low_complexity Low_complexity 1 199 0 338 107 18 0 chr1 16177643 16177699 -266015965 + (CGG)n Simple_repeat Simple_repeat 3 59 0 28 105 0 0 chr1 16177798 16177903 -266015761 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 16178533 16178562 -266015102 + AT_rich Low_complexity Low_complexity 1 29 0 285 146 0 0 chr1 16178684 16178732 -266014932 + (A)n Simple_repeat Simple_repeat 1 48 0 682 226 20 7 chr1 16179444 16179590 -266014074 + MIR SINE MIR 8 155 -107 2201 106 0 26 chr1 16179605 16179790 -266013874 - AluSx SINE Alu 0 312 142 2406 73 0 7 chr1 16179790 16180090 -266013574 - AluY SINE Alu -12 299 2 2201 106 0 26 chr1 16180090 16180229 -266013435 - AluSx SINE Alu -170 142 1 282 102 0 20 chr1 16180231 16180280 -266013384 - AluSp SINE Alu -170 133 86 2393 63 0 26 chr1 16180296 16180598 -266013066 - AluY SINE Alu 0 311 18 761 243 32 0 chr1 16181117 16181306 -266012358 - L1ME3A LINE L1 -5 6165 5971 2271 112 7 0 chr1 16181511 16181814 -266011850 + AluSx SINE Alu 1 305 -7 2399 91 13 0 chr1 16182108 16182415 -266011249 + AluSp SINE Alu 1 311 -2 2352 99 3 0 chr1 16182895 16183197 -266010467 - AluSq SINE Alu -10 303 1 2021 128 40 0 chr1 16183201 16183498 -266010166 - AluSx SINE Alu -3 309 1 746 195 167 0 chr1 16183540 16183714 -266009950 - MER58A DNA MER1_type -12 212 10 610 262 100 30 chr1 16183889 16184160 -266009504 - L2 LINE L2 0 3313 3024 1956 162 3 10 chr1 16184205 16184513 -266009151 - AluJo SINE Alu -6 306 1 1930 133 3 43 chr1 16184972 16185272 -266008392 + AluJo SINE Alu 5 292 -20 718 188 8 0 chr1 16185746 16185874 -266007790 - FLAM_C SINE Alu -10 133 5 2184 119 10 0 chr1 16185887 16186180 -266007484 - AluSq SINE Alu -17 296 1 2317 105 0 0 chr1 16186184 16186480 -266007184 - AluSx SINE Alu -14 298 3 2290 98 11 0 chr1 16187213 16187531 -266006133 + AluSg SINE Alu 1 321 0 2300 125 0 0 chr1 16187888 16188199 -266005465 - AluSx SINE Alu -1 311 1 310 281 134 80 chr1 16188563 16188656 -266005008 - MIR SINE MIR -14 248 161 2072 97 38 14 chr1 16188656 16188945 -266004719 - AluSq SINE Alu -17 296 1 1861 140 3 43 chr1 16188951 16189251 -266004413 - AluJb SINE Alu -20 292 5 310 281 134 80 chr1 16189251 16189374 -266004290 - MIR SINE MIR -105 157 13 2541 74 0 3 chr1 16189481 16189790 -266003874 - AluSq SINE Alu -3 310 3 519 273 15 0 chr1 16189792 16189924 -266003740 - L2 LINE L2 -13 3300 3167 1022 129 177 38 chr1 16190811 16190997 -266002667 - AluJo SINE Alu -18 294 83 1910 144 26 10 chr1 16191340 16191646 -266002018 - AluJo SINE Alu -1 311 1 2286 122 6 3 chr1 16191679 16191990 -266001674 - AluSx SINE Alu 0 312 1 872 129 0 0 chr1 16192184 16192300 -266001364 + FLAM_C SINE Alu 1 116 -17 182 37 37 0 chr1 16192300 16192327 -266001337 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3745 47 0 43 chr1 16192327 16192813 -266000851 - L1PA6 LINE L1 -14 6140 5676 21 0 0 0 chr1 16192822 16192843 -266000821 + AT_rich Low_complexity Low_complexity 1 21 0 1467 141 0 107 chr1 16192868 16193158 -266000506 + AluJo SINE Alu 50 308 -4 315 146 0 8 chr1 16193379 16193447 -266000217 - Alu SINE Alu 0 302 247 219 245 38 19 chr1 16193607 16193660 -266000004 + MIR3 SINE MIR 110 163 -45 2308 84 10 7 chr1 16193973 16194271 -265999393 + AluSq SINE Alu 1 299 -14 2431 97 0 3 chr1 16194291 16194600 -265999064 + AluSq SINE Alu 1 308 -5 2454 66 0 7 chr1 16194649 16194950 -265998714 + AluY SINE Alu 1 299 -12 2326 116 0 7 chr1 16195557 16195859 -265997805 - AluSx SINE Alu -12 300 1 1926 147 3 32 chr1 16195859 16196171 -265997493 - AluJo SINE Alu -9 303 1 228 288 50 12 chr1 16197356 16197436 -265996228 + L2 LINE L2 1742 1824 -1490 240 143 0 0 chr1 16197436 16197478 -265996186 + (TCCC)n Simple_repeat Simple_repeat 3 44 0 418 181 188 31 chr1 16197592 16197752 -265995912 - L1MC5 LINE L1 -173 7788 7604 297 296 31 0 chr1 16197923 16198021 -265995643 + L2 LINE L2 1979 2079 -1235 398 316 34 0 chr1 16198025 16198142 -265995522 - MER5B DNA MER1_type 0 178 58 1025 276 176 51 chr1 16198248 16198312 -265995352 + L2 LINE L2 2258 2313 -959 2015 148 6 13 chr1 16198312 16198623 -265995041 - AluSx SINE Alu -3 309 1 1025 276 176 51 chr1 16198623 16198951 -265994713 + L2 LINE L2 2313 2598 -674 1862 139 38 0 chr1 16198951 16199238 -265994426 + AluJb SINE Alu 1 298 -14 1025 276 176 51 chr1 16199238 16199534 -265994130 + L2 LINE L2 2598 2855 -417 2418 96 0 3 chr1 16199534 16199848 -265993816 - AluSq SINE Alu 0 313 1 1025 276 176 51 chr1 16199848 16200025 -265993639 + L2 LINE L2 2855 3263 -9 373 211 0 0 chr1 16200159 16200230 -265993434 - MER58A DNA MER1_type -3 221 151 1619 170 35 38 chr1 16200281 16200570 -265993094 + AluJb SINE Alu 1 288 -24 488 231 9 0 chr1 16200571 16200679 -265992985 - MER58A DNA MER1_type 0 145 37 2270 118 0 0 chr1 16201030 16201326 -265992338 - AluSq SINE Alu -17 296 1 2459 77 10 0 chr1 16201358 16201656 -265992008 - AluSc SINE Alu -8 301 1 724 173 0 31 chr1 16201736 16201863 -265991801 - FLAM_C SINE Alu -9 124 2 251 189 0 0 chr1 16201921 16201972 -265991692 + MIR SINE MIR 42 92 -116 990 265 42 0 chr1 16202035 16202273 -265991391 - MIR SINE MIR -8 254 7 371 64 0 0 chr1 16202613 16202660 -265991004 + Charlie5 DNA MER1_type 163 209 -2403 347 120 0 0 chr1 16202617 16202667 -265990997 - MER3 DNA MER1_type -119 90 41 * 445 266 22 14 chr1 16202681 16202820 -265990844 - MIR SINE MIR -118 144 5 441 267 24 13 chr1 16202904 16203082 -265990582 + L1M4 LINE L1 4419 4598 -1548 2298 54 4 11 chr1 16203085 16203363 -265990301 + AluY SINE Alu 1 276 -35 1663 117 0 4 chr1 16205277 16205508 -265988156 + AluSg1 SINE Alu 1 230 -79 1206 163 80 73 chr1 16205647 16205947 -265987717 + AluJo SINE Alu 1 302 -10 2054 126 0 0 chr1 16208383 16208677 -265984987 + AluSq SINE Alu 1 294 -19 2087 100 3 32 chr1 16209488 16209799 -265983865 + AluSp SINE Alu 1 302 -11 2243 70 0 54 chr1 16211349 16211664 -265982000 - AluY SINE Alu -13 298 1 681 130 10 0 chr1 16211664 16211764 -265981900 - AluY SINE Alu -167 144 44 22 35 0 0 chr1 16211811 16211840 -265981824 + AT_rich Low_complexity Low_complexity 1 29 0 2137 110 7 0 chr1 16212118 16212419 -265981245 - AluSx SINE Alu -9 303 1 2334 80 0 16 chr1 16213533 16213847 -265979817 - AluY SINE Alu -2 309 1 2148 112 7 0 chr1 16213861 16214166 -265979498 - AluSc SINE Alu -2 307 1 1646 164 3 24 chr1 16214174 16214466 -265979198 - AluSx SINE Alu -23 289 4 2789 7 0 0 chr1 16214483 16214791 -265978873 - AluYa5 SINE Alu -3 308 1 1867 122 7 7 chr1 16214814 16215101 -265978563 - AluSx SINE Alu -25 287 1 1761 109 41 17 chr1 16216889 16217183 -265976481 - AluSg SINE Alu -7 303 3 1850 50 50 0 chr1 16217193 16217431 -265976233 - AluY SINE Alu -2 309 60 1108 39 0 0 chr1 16217431 16217558 -265976106 - AluY SINE Alu -176 135 9 1844 148 0 0 chr1 16217566 16217856 -265975808 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 16218119 16218227 -265975437 - FLAM_A SINE Alu -15 127 20 1087 70 0 0 chr1 16218242 16218384 -265975280 - AluY SINE Alu -1 310 169 1134 274 16 5 chr1 16218427 16218803 -265974861 - L1 LINE L1 -2541 3605 3226 31 0 0 0 chr1 16218905 16218936 -265974728 + AT_rich Low_complexity Low_complexity 1 31 0 237 197 49 33 chr1 16221272 16221333 -265972331 + L1MC3 LINE L1 7496 7557 -228 283 200 31 15 chr1 16221398 16221463 -265972201 + L1MD3 LINE L1 7920 7985 -10 1032 226 81 0 chr1 16221464 16221774 -265971890 + L1 LINE L1 3510 3844 -2302 651 144 29 0 chr1 16221874 16221978 -265971686 - AluJb SINE Alu -121 191 85 2057 114 0 10 chr1 16223310 16223607 -265970057 + AluSg SINE Alu 1 294 -16 188 188 16 0 chr1 16224766 16224830 -265968834 + G-rich Low_complexity Low_complexity 5 69 0 182 170 0 21 chr1 16225201 16225248 -265968416 + G-rich Low_complexity Low_complexity 2 47 0 198 118 0 0 chr1 16225380 16225414 -265968250 + (T)n Simple_repeat Simple_repeat 1 34 0 840 193 32 11 chr1 16225426 16225613 -265968051 - AluSp SINE Alu -122 191 1 2409 63 0 22 chr1 16225641 16225956 -265967708 + AluY SINE Alu 1 308 -3 456 213 73 22 chr1 16226041 16226177 -265967487 - MIR3 SINE MIR -48 160 18 2135 74 46 0 chr1 16226429 16226714 -265966950 + AluSg SINE Alu 1 298 -12 345 186 5 0 chr1 16226821 16226904 -265966760 - Alu SINE Alu -251 51 1 2047 104 27 10 chr1 16226904 16227203 -265966461 - AluSx SINE Alu -8 304 1 338 261 0 0 chr1 16227359 16227428 -265966236 + FRAM/FAM SINE Alu 1 60 -106 1056 155 96 161 chr1 16227469 16227792 -265965872 + AluSx SINE Alu 1 302 0 417 306 120 29 chr1 16227818 16227910 -265965754 + L1MC/D LINE L1 4979 5061 -1085 2046 142 0 3 chr1 16227910 16228219 -265965445 + AluSx SINE Alu 1 308 -4 417 306 120 29 chr1 16228219 16228335 -265965329 + L1MC/D LINE L1 5061 5206 -940 371 281 107 18 chr1 16228391 16228413 -265965251 + L1MC/D LINE L1 5265 5284 -908 2418 79 3 0 chr1 16228413 16228718 -265964946 + AluSp SINE Alu 1 306 -7 371 281 107 18 chr1 16228718 16228922 -265964742 + L1MC/D LINE L1 5284 5503 -689 297 355 138 0 chr1 16228924 16229155 -265964509 + L1MC/D LINE L1 5536 5798 -2010 1532 120 20 149 chr1 16229225 16229414 -265964250 - AluJo SINE Alu -3 299 172 1967 110 0 0 chr1 16229414 16229677 -265963987 - AluSx SINE Alu -49 263 1 1532 120 20 149 chr1 16229677 16229829 -265963835 - AluJo SINE Alu -130 172 2 219 167 0 0 chr1 16229834 16229876 -265963788 + T-rich Low_complexity Low_complexity 1 42 0 2265 68 0 14 chr1 16230190 16230515 -265963149 - AluY SINE Alu 0 321 1 2133 114 3 3 chr1 16230518 16230816 -265962848 - AluSg SINE Alu -12 298 1 207 206 44 59 chr1 16230831 16230899 -265962765 + MIR3 SINE MIR 140 206 -2 189 0 0 0 chr1 16230925 16230946 -265962718 + (A)n Simple_repeat Simple_repeat 1 21 0 716 157 0 0 chr1 16231832 16231934 -265961730 + AluJb SINE Alu 189 290 -22 2259 102 3 6 chr1 16231936 16232249 -265961415 + AluSx SINE Alu 1 312 0 1647 172 11 0 chr1 16233547 16233832 -265959832 + AluJo SINE Alu 1 288 -24 861 219 22 0 chr1 16233838 16234016 -265959648 + FRAM SINE Alu 1 176 0 2189 115 3 6 chr1 16235744 16236056 -265957608 + AluSx SINE Alu 1 311 -1 215 31 31 0 chr1 16236705 16236737 -265956927 + (TA)n Simple_repeat Simple_repeat 1 33 0 2190 92 3 3 chr1 16238704 16239020 -265954644 - AluSx SINE Alu 0 316 1 2115 104 0 17 chr1 16240047 16240346 -265953318 + AluJo SINE Alu 14 307 -5 2395 80 0 0 chr1 16240779 16241081 -265952583 + AluSc SINE Alu 1 302 -7 1420 217 95 9 chr1 16242295 16242631 -265951033 - MLT1A1 LTR MaLR 0 365 1 306 0 0 0 chr1 16246623 16246657 -265947007 + (CGGGG)n Simple_repeat Simple_repeat 5 38 0 2277 90 0 3 chr1 16246735 16247036 -265946628 + AluSx SINE Alu 1 300 -12 493 231 118 35 chr1 16252207 16252410 -265941254 - MIR SINE MIR -22 240 21 2208 121 0 3 chr1 16253863 16254176 -265939488 + AluSx SINE Alu 1 312 0 257 180 0 20 chr1 16254265 16254315 -265939349 - MIR SINE MIR -131 131 83 285 118 0 0 chr1 16255358 16255409 -265938255 + (CA)n Simple_repeat Simple_repeat 2 52 0 482 255 186 16 chr1 16255461 16255649 -265938015 - MIR SINE MIR -14 248 29 465 331 62 0 chr1 16256299 16256477 -265937187 - MIR SINE MIR -57 205 17 1963 161 8 28 chr1 16256585 16256855 -265936809 - MLT1B LTR MaLR -8 382 121 2233 117 0 0 chr1 16256855 16257154 -265936510 - AluSx SINE Alu -13 299 1 1963 161 8 28 chr1 16257154 16257273 -265936391 - MLT1B LTR MaLR -269 121 1 2073 105 18 0 chr1 16257273 16257559 -265936105 - AluSg SINE Alu -19 291 1 2282 95 0 3 chr1 16258499 16258803 -265934861 - AluSg SINE Alu -7 303 1 252 136 0 85 chr1 16258999 16259058 -265934606 + (TCCCC)n Simple_repeat Simple_repeat 3 56 0 478 247 148 25 chr1 16260019 16260181 -265933483 - MIR SINE MIR -34 228 47 2158 89 0 35 chr1 16260248 16260561 -265933103 + AluSx SINE Alu 1 302 -10 428 347 10 20 chr1 16261321 16261520 -265932144 - L2 LINE L2 -227 3045 2849 1200 172 15 0 chr1 16261611 16261814 -265931850 - AluJ SINE Alu 0 312 107 1829 166 16 0 chr1 16261815 16262122 -265931542 + AluSx SINE Alu 1 312 0 414 100 0 0 chr1 16262122 16262182 -265931482 + (GA)n Simple_repeat Simple_repeat 2 61 0 2244 99 20 3 chr1 16262187 16262490 -265931174 + AluSq SINE Alu 1 308 -5 822 108 0 0 chr1 16262490 16262601 -265931063 - AluJ SINE Alu -201 111 1 868 98 76 0 chr1 16262611 16262743 -265930921 - AluSg/x SINE Alu -5 305 164 1085 123 0 7 chr1 16262778 16262932 -265930732 + AluSq SINE Alu 1 153 -160 537 98 24 0 chr1 16262932 16263014 -265930650 + Alu SINE Alu 223 306 -3 361 297 103 11 chr1 16263014 16263189 -265930475 - L2 LINE L2 -670 2644 2454 1012 167 0 0 chr1 16263721 16263883 -265929781 + AluSg/x SINE Alu 136 297 -15 2182 122 0 3 chr1 16264587 16264899 -265928765 + AluSx SINE Alu 1 311 -1 277 276 82 20 chr1 16265305 16265403 -265928261 + MIR SINE MIR 17 121 -87 786 276 86 16 chr1 16265408 16265651 -265928013 - MIR SINE MIR 0 262 3 247 306 35 0 chr1 16266999 16267084 -265926580 - L2 LINE L2 0 3272 3185 2342 87 3 0 chr1 16267125 16267435 -265926229 + AluSx SINE Alu 1 311 -1 587 240 67 17 chr1 16267484 16267663 -265926001 - MLT1E LTR MaLR 0 593 406 364 234 133 8 chr1 16267797 16267925 -265925739 - MLT1E LTR MaLR -448 145 2 373 289 40 13 chr1 16267925 16268074 -265925590 - L2 LINE L2 -263 3050 2898 1565 102 0 0 chr1 16268082 16268298 -265925366 + AluSg1 SINE Alu 1 216 -93 942 112 0 0 chr1 16268313 16268447 -265925217 + AluSg/x SINE Alu 170 303 -6 329 340 0 0 chr1 16268514 16268611 -265925053 - L2 LINE L2 -558 2756 2660 266 340 89 29 chr1 16268630 16268945 -265924719 - L2 LINE L2 -339 2975 2642 1836 145 0 17 chr1 16268949 16269086 -265924578 + AluJb SINE Alu 1 139 -174 2166 70 0 0 chr1 16269086 16269356 -265924308 + AluY SINE Alu 35 304 -7 1836 145 0 17 chr1 16269356 16269536 -265924128 + AluJb SINE Alu 139 313 0 2040 111 0 0 chr1 16269628 16269907 -265923757 - AluSx SINE Alu -33 279 1 1158 99 12 0 chr1 16270724 16270885 -265922779 - AluSg/x SINE Alu -8 302 140 2297 100 0 0 chr1 16270892 16271191 -265922473 - AluSq SINE Alu -14 299 1 2438 70 0 16 chr1 16271280 16271625 -265922039 + AluY SINE Alu 1 340 0 318 188 29 0 chr1 16271631 16271700 -265921964 + Alu SINE Alu 231 301 0 327 172 65 11 chr1 16271734 16271827 -265921837 - MLT1K LTR MaLR -103 485 388 362 241 118 52 chr1 16272154 16272384 -265921280 - MIR3 SINE MIR -19 243 5 479 302 124 48 chr1 16272558 16272929 -265920735 + L2 LINE L2 2910 3308 -5 278 313 93 63 chr1 16273854 16274030 -265919634 + MIR SINE MIR 35 213 -49 440 274 114 17 chr1 16274688 16274863 -265918801 - MIR SINE MIR -8 254 63 299 165 66 44 chr1 16275036 16275127 -265918537 + C-rich Low_complexity Low_complexity 2 94 0 25 0 0 0 chr1 16275182 16275207 -265918457 + GC_rich Low_complexity Low_complexity 1 25 0 205 286 0 0 chr1 16275296 16275359 -265918305 + G-rich Low_complexity Low_complexity 81 143 0 22 0 0 0 chr1 16275401 16275423 -265918241 + GC_rich Low_complexity Low_complexity 1 22 0 291 305 121 0 chr1 16276227 16276368 -265917296 - MIR SINE MIR -70 192 35 2298 70 13 0 chr1 16276518 16276819 -265916845 + AluSx SINE Alu 1 305 -7 2314 101 0 0 chr1 16276824 16277132 -265916532 + AluSx SINE Alu 1 308 -4 327 322 39 50 chr1 16277914 16278094 -265915570 + MIR SINE MIR 82 259 -3 1892 103 28 21 chr1 16278664 16278833 -265914831 - AluSx SINE Alu -11 301 128 2155 122 0 0 chr1 16278833 16279137 -265914527 - AluSg1 SINE Alu -5 304 1 1892 103 28 21 chr1 16279137 16279257 -265914407 - AluSx SINE Alu -184 128 10 2265 92 3 3 chr1 16279642 16279945 -265913719 - AluSq SINE Alu -10 303 1 464 279 96 21 chr1 16280158 16280351 -265913313 + MIR SINE MIR 3 209 -53 329 284 53 0 chr1 16282015 16282110 -265911554 - MER5A DNA MER1_type -24 165 66 874 158 72 0 chr1 16282110 16282151 -265911513 - AluJb SINE Alu -18 294 257 198 0 0 0 chr1 16282151 16282173 -265911491 + (CAGTG)n Simple_repeat Simple_repeat 1 22 0 874 158 72 0 chr1 16282173 16282283 -265911381 - AluJb SINE Alu -55 257 132 258 32 0 0 chr1 16282283 16282314 -265911350 + (TG)n Simple_repeat Simple_repeat 2 32 0 2198 98 0 0 chr1 16282317 16282603 -265911061 - AluSx SINE Alu -26 286 1 2124 109 7 0 chr1 16282606 16282899 -265910765 - AluSp SINE Alu -18 295 1 1853 156 0 10 chr1 16282899 16283199 -265910465 - AluJo SINE Alu -14 298 1 319 239 0 0 chr1 16283200 16283267 -265910397 - MIR SINE MIR -96 112 46 245 316 72 36 chr1 16283733 16283872 -265909792 - L3b LINE CR1 -98 1485 1342 1948 138 7 3 chr1 16283885 16284189 -265909475 - AluSx SINE Alu -7 305 1 227 314 23 0 chr1 16284366 16284452 -265909212 + MIR SINE MIR 67 154 -108 2322 106 0 0 chr1 16285201 16285512 -265908152 + AluSx SINE Alu 1 311 -1 343 177 0 6 chr1 16285528 16285597 -265908067 + Alu SINE Alu 1 55 -247 2240 89 7 0 chr1 16285637 16285939 -265907725 - AluSc SINE Alu -5 304 1 2073 144 0 6 chr1 16285940 16286253 -265907411 - AluSx SINE Alu -1 311 1 545 249 53 62 chr1 16286605 16286745 -265906919 - MIR SINE MIR -29 233 93 1468 209 127 45 chr1 16286745 16286928 -265906736 - MLT1D LTR MaLR -3 502 335 2245 98 0 22 chr1 16286928 16287244 -265906420 - AluSg SINE Alu -1 309 1 2066 141 3 0 chr1 16287246 16287552 -265906112 - AluSx SINE Alu -5 307 1 1468 209 127 45 chr1 16287552 16287829 -265905835 - MLT1D LTR MaLR -170 335 1 545 249 53 62 chr1 16287829 16287913 -265905751 - MIR SINE MIR -169 93 11 258 317 246 7 chr1 16288061 16288203 -265905461 + MER5A DNA MER1_type 14 189 0 837 136 0 0 chr1 16288678 16288796 -265904868 + FLAM_C SINE Alu 1 118 -25 21 36 0 0 chr1 16288808 16288836 -265904828 + AT_rich Low_complexity Low_complexity 1 28 0 1413 113 0 5 chr1 16288887 16289091 -265904573 - AluSq SINE Alu -109 204 2 259 115 0 49 chr1 16289110 16289130 -265904534 + L1MB1 LINE L1 6110 6129 -39 1867 106 84 0 chr1 16289130 16289403 -265904261 + AluSx SINE Alu 1 296 -16 2311 86 3 3 chr1 16289405 16289707 -265903957 + AluSp SINE Alu 3 304 -9 259 115 0 49 chr1 16289707 16289744 -265903920 + L1MB1 LINE L1 6130 6167 -1 1833 141 33 7 chr1 16289867 16290171 -265903493 + AluSx SINE Alu 1 312 0 1225 167 100 154 chr1 16290907 16290943 -265902721 - MER21A LTR ERV1 -373 554 518 2566 39 0 13 chr1 16290943 16291253 -265902411 + AluY SINE Alu 1 306 -5 2233 114 0 0 chr1 16291262 16291561 -265902103 + AluSg SINE Alu 2 300 -10 1225 167 100 154 chr1 16291561 16292128 -265901536 - MER21A LTR ERV1 -417 510 16 631 123 36 72 chr1 16292142 16292280 -265901384 + FLAM_C SINE Alu 1 133 0 195 326 106 64 chr1 16292306 16292447 -265901217 - MIR SINE MIR -98 164 18 236 255 0 98 chr1 16292464 16292566 -265901098 - L2 LINE L2 -49 3223 3132 2248 88 3 34 chr1 16292589 16292909 -265900755 + AluSg SINE Alu 1 310 0 191 330 50 20 chr1 16293329 16293429 -265900235 - L2 LINE L2 -33 3239 3137 618 266 102 71 chr1 16293478 16293579 -265900085 - MLT1K LTR MaLR -34 554 458 2218 90 10 0 chr1 16293579 16293879 -265899785 - AluSq SINE Alu -10 303 1 618 266 102 71 chr1 16293879 16294141 -265899523 - MLT1K LTR MaLR -130 458 180 867 155 7 0 chr1 16294289 16294431 -265899233 + FLAM_C SINE Alu 1 143 0 268 325 65 30 chr1 16294466 16294635 -265899029 - L2 LINE L2 -201 3071 2897 2271 109 0 3 chr1 16294643 16294947 -265898717 - AluSp SINE Alu -9 304 2 2160 95 7 3 chr1 16294948 16295242 -265898422 - AluSx SINE Alu -17 295 1 2112 125 6 10 chr1 16295298 16295609 -265898055 - AluSx SINE Alu -2 310 1 506 198 0 138 chr1 16295805 16295880 -265897784 + MER45A DNA AcHobo 35 119 -1462 1541 164 28 54 chr1 16295880 16296197 -265897467 - AluJo SINE Alu -3 309 1 506 198 0 138 chr1 16296197 16296210 -265897454 + MER45A DNA AcHobo 119 132 -1449 1920 134 17 3 chr1 16296210 16296501 -265897163 - AluSx SINE Alu -17 295 1 506 198 0 138 chr1 16296501 16296578 -265897086 + MER45A DNA AcHobo 132 178 0 1808 150 21 7 chr1 16297093 16297379 -265896285 + AluJb SINE Alu 1 290 -22 1179 133 0 0 chr1 16297379 16297545 -265896119 + AluJb SINE Alu 134 299 -13 1181 140 0 0 chr1 16297653 16297824 -265895840 + AluJb SINE Alu 129 299 -13 1679 140 42 3 chr1 16298208 16298494 -265895170 - AluSg1 SINE Alu -12 297 1 456 213 73 22 chr1 16298746 16298882 -265894782 + MIR3 SINE MIR 18 160 -48 2409 63 0 22 chr1 16298967 16299282 -265894382 - AluY SINE Alu -3 308 1 1913 137 23 0 chr1 16299310 16299610 -265894054 + AluSx SINE Alu 1 307 -5 2192 93 17 3 chr1 16300458 16300749 -265892915 + AluSq SINE Alu 1 295 -18 2284 92 0 0 chr1 16300759 16301052 -265892612 + AluSx SINE Alu 1 293 -19 1849 137 35 0 chr1 16302257 16302541 -265891123 + AluSx SINE Alu 2 295 -17 1734 146 30 0 chr1 16302558 16302825 -265890839 + AluJb SINE Alu 24 298 -14 231 328 118 8 chr1 16302918 16303037 -265890627 + MIR3 SINE MIR 5 136 -72 2275 108 0 0 chr1 16303063 16303370 -265890294 + AluSg SINE Alu 1 307 -3 225 0 0 0 chr1 16303370 16303395 -265890269 + (TA)n Simple_repeat Simple_repeat 1 25 0 2222 104 0 7 chr1 16303415 16303714 -265889950 + AluSc SINE Alu 1 297 -12 1914 144 0 0 chr1 16303714 16304019 -265889645 + AluSq SINE Alu 1 305 0 835 129 0 0 chr1 16304019 16304135 -265889529 - AluJo/FLAM SINE Alu -196 116 1 606 254 133 17 chr1 16304281 16304521 -265889143 - MER90 LTR ERV1 -1 613 346 2273 100 3 0 chr1 16304643 16304952 -265888712 + AluSp SINE Alu 1 310 -3 328 318 23 0 chr1 16304962 16304978 -265888686 + L1MCa LINE L1 1978 1992 -4434 195 222 0 0 chr1 16304978 16305023 -265888641 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 * 332 360 0 0 chr1 16304987 16305076 -265888588 - L1MC4 LINE L1 -1340 6702 6614 * 350 289 48 0 chr1 16305030 16305113 -265888551 + L1MC4 LINE L1 6616 6702 -1340 430 305 13 63 chr1 16305427 16306332 -265887332 + L1PA16 LINE L1 5639 5925 -241 1911 152 28 33 chr1 16305465 16305622 -265888042 + L1MB3 LINE L1 5670 5826 -357 2335 86 0 26 chr1 16305622 16305926 -265887738 + AluSx SINE Alu 3 298 -14 2282 123 0 0 chr1 16305926 16306227 -265887437 + AluSg SINE Alu 1 301 -9 1911 152 28 33 chr1 16306227 16306463 -265887201 + L1MB3 LINE L1 5824 6062 -121 1680 138 127 0 chr1 16306463 16306731 -265886933 + AluJb SINE Alu 1 302 -10 1321 129 4 71 chr1 16306739 16306810 -265886854 + AluSg/x SINE Alu 75 149 -163 2389 57 0 0 chr1 16306810 16307113 -265886551 + AluY SINE Alu 1 303 0 1321 129 4 71 chr1 16307113 16307265 -265886399 + AluSg/x SINE Alu 149 284 -28 627 143 87 0 chr1 16307265 16307391 -265886273 + L1MB3 LINE L1 6044 6180 -3 2460 72 0 57 chr1 16307790 16308121 -265885543 + AluSx SINE Alu 1 312 0 1092 160 0 66 chr1 16308770 16308827 -265884837 + AluSg/x SINE Alu 85 144 -158 2538 65 13 7 chr1 16308827 16309137 -265884527 + AluSp SINE Alu 1 312 -1 1092 160 0 66 chr1 16309137 16309311 -265884353 + AluSg/x SINE Alu 144 302 0 243 268 116 14 chr1 16309773 16309911 -265883753 - MIR SINE MIR -31 231 80 1914 158 3 14 chr1 16310074 16310371 -265883293 - AluJb SINE Alu -18 294 1 927 135 0 0 chr1 16310391 16310524 -265883140 - FLAM_C SINE Alu 0 133 1 786 158 71 63 chr1 16310702 16310955 -265882709 + LTR37A LTR ERV1 1 294 -132 2342 94 0 17 chr1 16310955 16311252 -265882412 - AluSx SINE Alu -20 292 1 786 158 71 63 chr1 16311252 16311374 -265882290 + LTR37A LTR ERV1 294 414 -12 209 195 24 0 chr1 16311524 16311565 -265882099 + G-rich Low_complexity Low_complexity 2 43 0 851 152 8 0 chr1 16311612 16311744 -265881920 + FLAM_C SINE Alu 1 133 0 223 305 53 11 chr1 16312048 16312143 -265881521 - MIR SINE MIR -59 203 105 808 198 0 6 chr1 16312315 16312477 -265881187 + L1MD3 LINE L1 7725 7885 -110 2505 67 0 0 chr1 16312477 16312777 -265880887 - AluY SINE Alu -11 300 1 2395 84 3 3 chr1 16312778 16313075 -265880589 - AluSc SINE Alu -12 297 1 231 250 134 36 chr1 16313531 16313643 -265880021 + MIR3 SINE MIR 8 130 -78 1142 68 0 0 chr1 16313689 16313822 -265879842 + AluSq/x SINE Alu 1 133 -179 2515 66 7 0 chr1 16313826 16314131 -265879533 + AluSp SINE Alu 1 307 -6 2449 85 3 0 chr1 16314135 16314441 -265879223 + AluSp SINE Alu 1 307 -6 231 114 0 0 chr1 16314875 16314910 -265878754 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 189 262 48 36 chr1 16314910 16314994 -265878670 - L2 LINE L2 -9 3304 3220 214 290 43 11 chr1 16315034 16315127 -265878537 - L2 LINE L2 -221 3051 2956 250 216 147 35 chr1 16315345 16315461 -265878203 - MIR3 SINE MIR -47 161 33 432 242 270 23 chr1 16316264 16316656 -265877008 - L2 LINE L2 -2007 1307 819 258 258 16 0 chr1 16316698 16316760 -265876904 + L2 LINE L2 3210 3272 0 2265 117 3 0 chr1 16316819 16317117 -265876547 - AluSx SINE Alu -12 300 2 318 131 16 0 chr1 16317138 16317199 -265876465 - L1MB7 LINE L1 0 6184 6123 1919 148 0 33 chr1 16317200 16317504 -265876160 - AluJb SINE Alu -18 294 1 1786 190 68 29 chr1 16317549 16317991 -265875673 + LTR2B LTR ERV1 32 490 0 2131 98 7 36 chr1 16318493 16318798 -265874866 - AluSq SINE Alu -17 296 1 503 289 170 0 chr1 16318830 16318989 -265874675 - MER5A DNA MER1_type 0 189 4 1838 156 28 3 chr1 16318995 16319283 -265874381 + AluJo SINE Alu 1 295 -17 2083 110 28 7 chr1 16319391 16319681 -265873983 - AluSx SINE Alu -14 298 3 389 217 217 39 chr1 16319731 16319860 -265873804 + L2 LINE L2 3161 3312 -1 2196 121 10 0 chr1 16319915 16320205 -265873459 - AluSx SINE Alu -19 293 1 343 182 192 30 chr1 16320230 16320329 -265873335 + FLAM_C SINE Alu 1 115 -18 2435 78 0 13 chr1 16320336 16320643 -265873021 - AluY SINE Alu -8 303 1 1215 153 213 24 chr1 16320698 16320968 -265872696 - AluSx SINE Alu 0 312 1 192 77 0 0 chr1 16321268 16321294 -265872370 + (TCC)n Simple_repeat Simple_repeat 2 27 0 898 96 80 0 chr1 16321390 16321515 -265872149 - AluSq/x SINE Alu -177 135 1 1854 160 0 0 chr1 16321589 16321896 -265871768 + AluJb SINE Alu 1 312 0 951 104 0 0 chr1 16321924 16322049 -265871615 - AluSc SINE Alu -15 294 170 2056 136 0 7 chr1 16322183 16322484 -265871180 - AluSx SINE Alu -13 299 1 2435 106 0 0 chr1 16322996 16323308 -265870356 - AluSx SINE Alu 0 312 1 1495 174 98 21 chr1 16323358 16323645 -265870019 - AluJo SINE Alu -3 309 1 261 271 131 62 chr1 16323659 16323804 -265869860 + MIR SINE MIR 9 173 -89 1981 162 0 0 chr1 16324213 16324509 -265869155 + AluJb SINE Alu 1 296 -16 349 289 11 11 chr1 16324510 16324600 -265869064 + L3 LINE CR1 1479 1568 -9 2544 64 0 0 chr1 16324655 16324953 -265868711 + AluY SINE Alu 1 298 -13 257 327 39 32 chr1 16325234 16325390 -265868274 - L2 LINE L2 -276 3037 2881 2549 60 0 10 chr1 16325470 16325768 -265867896 - AluSx SINE Alu -17 295 1 277 254 182 27 chr1 16326049 16326159 -265867505 - MIR SINE MIR -62 146 20 289 170 0 0 chr1 16326160 16326213 -265867451 - Alu SINE Alu -4 296 244 453 73 0 0 chr1 16326213 16326268 -265867396 + AluJo/FRAM SINE Alu 211 265 -47 1069 191 36 27 chr1 16326391 16326611 -265867053 - AluJo SINE Alu -6 306 85 342 216 24 8 chr1 16326643 16326749 -265866915 - AluSp/q SINE Alu -57 246 186 934 160 65 45 chr1 16326751 16326951 -265866713 + AluJo SINE Alu 104 307 -5 2151 96 7 7 chr1 16326975 16327266 -265866398 + AluSc SINE Alu 1 291 -18 492 176 38 114 chr1 16327301 16327417 -265866247 + MER58 DNA MER1_type 1 95 -246 2077 123 7 42 chr1 16327417 16327557 -265866107 + AluSx SINE Alu 6 149 -163 2597 57 0 0 chr1 16327557 16327856 -265865808 + AluY SINE Alu 1 299 -12 2077 123 7 42 chr1 16327856 16328023 -265865641 + AluSx SINE Alu 149 302 -10 492 176 38 114 chr1 16328023 16328116 -265865548 + MER58 DNA MER1_type 95 194 -147 2281 101 3 0 chr1 16328117 16328415 -265865249 - AluSg SINE Alu -9 301 3 2143 133 0 3 chr1 16328417 16328710 -265864954 - AluSg SINE Alu -18 292 1 2230 93 0 0 chr1 16328711 16328989 -265864675 - AluSx SINE Alu 0 312 35 307 133 33 0 chr1 16329037 16329097 -265864567 + AluSp/q SINE Alu 242 303 0 321 304 179 0 chr1 16329140 16329252 -265864412 - MIR SINE MIR -61 147 16 2274 79 7 20 chr1 16329720 16330023 -265863641 - AluSc SINE Alu -10 299 1 2401 87 0 19 chr1 16330675 16330984 -265862680 - AluSq SINE Alu -10 303 1 2088 122 7 10 chr1 16331569 16331864 -265861800 + AluSx SINE Alu 1 294 -18 1757 168 24 7 chr1 16331963 16332260 -265861404 + AluJo SINE Alu 5 306 -6 586 145 0 0 chr1 16332359 16332442 -265861222 - AluJ/FLAM SINE Alu -228 84 2 216 308 169 41 chr1 16332496 16332668 -265860996 + L2 LINE L2 1435 1628 -1686 1282 139 42 28 chr1 16332680 16332895 -265860769 + AluJo SINE Alu 85 302 -10 1532 140 0 0 chr1 16333003 16333217 -265860447 + AluSx SINE Alu 1 214 -98 2402 91 3 0 chr1 16333220 16333516 -265860148 + AluSc SINE Alu 5 301 -8 646 129 0 20 chr1 16333516 16333617 -265860047 + AluSx SINE Alu 204 302 -8 441 162 0 0 chr1 16333769 16333837 -265859827 - AluSg/x SINE Alu -37 275 208 2108 137 0 10 chr1 16334059 16334366 -265859298 + AluSx SINE Alu 1 304 -8 2332 109 3 0 chr1 16334371 16334675 -265858989 + AluSp SINE Alu 1 305 -8 1249 145 5 5 chr1 16334793 16334979 -265858685 + AluJb SINE Alu 1 186 -126 689 121 0 0 chr1 16335179 16335278 -265858386 - AluSx SINE Alu -8 302 204 2402 91 3 0 chr1 16335278 16335574 -265858090 - AluSc SINE Alu -8 301 5 1532 140 0 0 chr1 16335577 16335791 -265857873 - AluSx SINE Alu -98 214 1 313 128 0 0 chr1 16335853 16335900 -265857764 + AluS SINE Alu 38 84 -219 1757 168 24 7 chr1 16335999 16336296 -265857368 - AluJo SINE Alu -6 306 5 2180 104 10 0 chr1 16336395 16336684 -265856980 - AluSg SINE Alu -18 292 1 2387 93 7 0 chr1 16336697 16336997 -265856667 - AluSp SINE Alu -11 302 1 906 125 7 15 chr1 16336997 16337133 -265856531 - AluSq/x SINE Alu -177 135 1 1472 219 88 77 chr1 16337141 16337675 -265855989 + L2 LINE L2 2002 2541 -773 1638 107 119 11 chr1 16337675 16337936 -265855728 + AluSg SINE Alu 5 293 -17 815 134 112 15 chr1 16337936 16338094 -265855570 + AluSc SINE Alu 132 302 0 2382 97 10 0 chr1 16338096 16338405 -265855259 + AluSx SINE Alu 1 312 0 1302 125 0 0 chr1 16338954 16339130 -265854534 + AluSg/x SINE Alu 116 291 -19 299 252 69 46 chr1 16339177 16339249 -265854415 + L2 LINE L2 2587 2665 -649 2191 74 3 14 chr1 16339249 16339534 -265854130 - AluY SINE Alu -8 303 22 299 252 69 46 chr1 16339534 16339592 -265854072 + L2 LINE L2 2665 2720 -594 914 136 71 26 chr1 16339693 16339848 -265853816 - AluJb SINE Alu -17 295 134 1698 180 14 0 chr1 16339849 16340143 -265853521 - AluJo SINE Alu -14 298 1 939 269 72 67 chr1 16340148 16340321 -265853343 + L2 LINE L2 2865 3036 -277 744 250 12 0 chr1 16340321 16340481 -265853183 + FRAM SINE Alu 4 165 -1 939 269 72 67 chr1 16340481 16340754 -265852910 + L2 LINE L2 3036 3313 0 2003 115 30 7 chr1 16340958 16341253 -265852411 - AluSg SINE Alu -8 302 1 2557 51 3 16 chr1 16341617 16341929 -265851735 - AluY SINE Alu -3 308 1 2310 77 17 3 chr1 16342418 16342717 -265850947 - AluSp SINE Alu -10 303 1 2170 44 4 25 chr1 16342825 16343099 -265850565 - AluY SINE Alu -43 268 1 565 167 139 0 chr1 16343386 16343494 -265850170 + FLAM_C SINE Alu 1 123 -10 1679 92 141 4 chr1 16343511 16343773 -265849891 + AluSc SINE Alu 2 299 0 755 187 107 7 chr1 16343781 16343931 -265849733 + FRAM SINE Alu 1 165 -1 21 82 0 0 chr1 16345129 16345178 -265848486 + GC_rich Low_complexity Low_complexity 1 49 0 2321 71 17 3 chr1 16346687 16346983 -265846681 - AluSq SINE Alu -13 300 1 648 171 9 0 chr1 16347000 16347111 -265846553 - FLAM_C SINE Alu -30 113 2 1440 159 101 8 chr1 16348172 16348451 -265845213 - AluJo SINE Alu 0 303 1 2024 118 10 0 chr1 16348635 16348932 -265844732 + AluSq SINE Alu 1 300 -13 743 201 81 0 chr1 16349095 16349244 -265844420 + FRAM SINE Alu 1 161 -5 1953 139 4 0 chr1 16349394 16349674 -265843990 - AluSp SINE Alu -7 306 26 6206 129 70 19 chr1 16349774 16350851 -265842813 + Tigger4(Zombi) DNA MER2_type 579 1710 -1021 1678 146 29 0 chr1 16350879 16351187 -265842477 + Tigger4(Zombi) DNA MER2_type 1853 2169 -562 524 363 59 52 chr1 16352292 16352716 -265840948 + MER115 DNA AcHobo 8 434 -259 310 347 139 17 chr1 16352743 16353159 -265840505 - L2 LINE L2 -182 3131 2667 287 217 14 0 chr1 16353174 16353243 -265840421 - MLT1I LTR MaLR -6 403 334 3127 226 4 11 chr1 16353343 16354092 -265839572 - L1P LINE L1 -996 5150 4407 191 111 0 28 chr1 16354152 16354188 -265839476 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1183 208 27 8 chr1 16354222 16354504 -265839160 + MLT1F1 LTR MaLR 231 558 -9 901 145 0 0 chr1 16355054 16355185 -265838479 - AluSc SINE Alu -169 140 10 757 252 0 7 chr1 16355186 16355341 -265838323 + AluJb SINE Alu 107 260 -52 25 51 0 0 chr1 16355344 16355383 -265838281 + AT_rich Low_complexity Low_complexity 1 39 0 2432 82 0 0 chr1 16355385 16355677 -265837987 + AluSx SINE Alu 1 292 -20 2087 159 0 6 chr1 16355677 16355991 -265837673 + AluJb SINE Alu 1 312 0 232 264 33 22 chr1 16355993 16356084 -265837580 + L1MC5 LINE L1 7818 7909 -52 292 216 34 11 chr1 16356086 16356174 -265837490 - Charlie4 DNA MER1_type -132 1829 1740 1281 125 0 0 chr1 16356174 16356342 -265837322 + AluSq SINE Alu 1 168 -145 1283 169 62 21 chr1 16356442 16356684 -265836980 - AluJb SINE Alu -59 253 2 1786 105 112 4 chr1 16356723 16356990 -265836674 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 16357301 16357323 -265836341 + AT_rich Low_complexity Low_complexity 1 22 0 1669 97 0 22 chr1 16357326 16357463 -265836201 + AluSx SINE Alu 1 133 -179 2134 121 0 7 chr1 16357463 16357761 -265835903 + AluSg SINE Alu 1 296 -14 1669 97 0 22 chr1 16357761 16357849 -265835815 + AluSx SINE Alu 133 221 -91 595 108 16 78 chr1 16357952 16358081 -265835583 + L1MB3 LINE L1 5859 5979 -204 2042 136 3 3 chr1 16358081 16358382 -265835282 - AluSx SINE Alu -11 301 1 25 0 0 0 chr1 16358384 16358409 -265835255 + AT_rich Low_complexity Low_complexity 1 25 0 902 128 47 0 chr1 16358521 16358669 -265834995 - FRAM SINE Alu -9 167 13 727 213 23 111 chr1 16358688 16358904 -265834760 - AluJo SINE Alu -105 207 11 2156 107 3 7 chr1 16358974 16359265 -265834399 - AluSx SINE Alu -21 291 2 2121 118 3 10 chr1 16359334 16359639 -265834025 - AluSx SINE Alu -9 303 1 662 154 19 0 chr1 16359788 16359892 -265833772 - AluSg/x SINE Alu -14 298 193 2361 74 0 0 chr1 16360259 16360566 -265833098 - AluY SINE Alu 0 307 1 778 99 0 18 chr1 16361024 16361121 -265832543 + AluSc SINE Alu 193 289 -20 815 147 0 0 chr1 16361121 16361237 -265832427 - AluJo/FLAM SINE Alu -185 117 2 778 99 0 18 chr1 16361237 16361250 -265832414 + AluSc SINE Alu 289 301 -8 277 197 45 0 chr1 16361270 16361336 -265832328 - L1MC4 LINE L1 -58 7984 7916 416 315 8 0 chr1 16361345 16361472 -265832192 - L1MC4 LINE L1 -174 7868 7741 782 178 16 0 chr1 16361474 16361603 -265832061 + Tigger3(Golem) DNA MER2_type 2898 3028 -1 1497 193 3 29 chr1 16361638 16361949 -265831715 + AluJb SINE Alu 1 303 -9 972 190 0 11 chr1 16362127 16362301 -265831363 - FAM SINE Alu 0 175 4 2562 47 0 37 chr1 16362332 16362653 -265831011 - AluY SINE Alu -2 309 1 2716 43 0 0 chr1 16362890 16363194 -265830470 - AluY SINE Alu -6 305 2 684 189 16 24 chr1 16363230 16363357 -265830307 - AluJb SINE Alu -19 293 168 433 65 0 86 chr1 16363363 16363456 -265830208 + (TG)n Simple_repeat Simple_repeat 1 85 0 643 173 0 0 chr1 16363456 16363560 -265830104 - FLAM_C SINE Alu -23 120 17 2171 97 7 3 chr1 16363594 16363882 -265829782 - AluSc SINE Alu -18 291 3 207 0 0 0 chr1 16363884 16363907 -265829757 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1189 151 10 44 chr1 16363908 16364113 -265829551 - AluSg/x SINE Alu -29 283 86 2157 119 7 3 chr1 16364119 16364414 -265829250 - AluSg SINE Alu -14 296 1 21 0 0 0 chr1 16364491 16364512 -265829152 + AT_rich Low_complexity Low_complexity 1 21 0 487 196 21 10 chr1 16364643 16364740 -265828924 - FLAM_C SINE Alu -24 119 22 2405 97 0 7 chr1 16364744 16365053 -265828611 + AluSg SINE Alu 1 307 -3 252 67 0 0 chr1 16365717 16365747 -265827917 + Alu SINE Alu 11 40 -263 2347 99 0 0 chr1 16365751 16366045 -265827619 - AluY SINE Alu -17 294 1 880 202 30 0 chr1 16366078 16366246 -265827418 + AluJb SINE Alu 127 299 -13 1960 175 0 0 chr1 16366543 16366846 -265826818 + AluJb SINE Alu 1 303 -9 617 153 96 113 chr1 16366856 16367033 -265826631 + L1MB3 LINE L1 5695 5868 -315 786 182 0 0 chr1 16367136 16367268 -265826396 - FLAM_C SINE Alu 0 133 2 557 144 21 0 chr1 16367270 16367367 -265826297 - L1M4 LINE L1 -394 5784 5686 254 146 0 0 chr1 16367367 16367415 -265826249 - AluJb SINE Alu -4 298 251 967 164 5 35 chr1 16367422 16367623 -265826041 - L1M4 LINE L1 -638 5546 5352 1628 183 4 0 chr1 16367636 16367904 -265825760 - AluJb SINE Alu -43 269 1 41 21 0 0 chr1 16367909 16367957 -265825707 + AT_rich Low_complexity Low_complexity 1 48 0 630 215 8 0 chr1 16367957 16368078 -265825586 - FLAM_C SINE Alu -11 122 1 277 211 0 0 chr1 16368120 16368172 -265825492 - L1M4 LINE L1 -891 5255 5204 2618 51 0 0 chr1 16368210 16368505 -265825159 - AluY SINE Alu -16 295 1 25 0 0 0 chr1 16368810 16368835 -265824829 + AT_rich Low_complexity Low_complexity 1 25 0 1947 123 7 7 chr1 16368835 16369127 -265824537 - AluSq SINE Alu -21 292 1 571 177 100 23 chr1 16369352 16369517 -265824147 - AluJb SINE Alu 0 317 143 2235 101 0 10 chr1 16369644 16369941 -265823723 - AluSx SINE Alu -18 294 1 287 152 212 0 chr1 16370756 16370822 -265822842 - AluSg/x SINE Alu -7 293 214 252 0 0 0 chr1 16370941 16370969 -265822695 + (A)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr1 16371011 16371039 -265822625 + AT_rich Low_complexity Low_complexity 1 28 0 2304 105 0 3 chr1 16371115 16371419 -265822245 + AluSq SINE Alu 1 303 -10 2326 101 7 3 chr1 16371419 16371725 -265821939 + AluSp SINE Alu 1 307 -6 2267 98 0 10 chr1 16371927 16372224 -265821440 + AluSx SINE Alu 1 294 -18 210 135 39 58 chr1 16372850 16372902 -265820762 + (CCCG)n Simple_repeat Simple_repeat 1 51 0 324 83 0 0 chr1 16373029 16373077 -265820587 + (CCG)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr1 16373461 16373485 -265820179 + GC_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr1 16376200 16376232 -265817432 + AT_rich Low_complexity Low_complexity 1 32 0 2115 122 3 3 chr1 16376798 16377093 -265816571 + AluSg SINE Alu 1 295 -15 27 29 0 0 chr1 16377568 16377602 -265816062 + AT_rich Low_complexity Low_complexity 1 34 0 1393 159 35 13 chr1 16378015 16378247 -265815417 - AluJb SINE Alu -75 237 1 2103 133 13 0 chr1 16378273 16378581 -265815083 - AluSx SINE Alu 0 312 1 2246 110 0 13 chr1 16378583 16378756 -265814908 - AluSx SINE Alu -6 306 137 2198 105 7 16 chr1 16378756 16379060 -265814604 - AluSg SINE Alu -9 301 1 2246 110 0 13 chr1 16379060 16379196 -265814468 - AluSx SINE Alu -175 137 1 2271 88 24 0 chr1 16379581 16379876 -265813788 - AluSp SINE Alu -11 302 1 457 69 0 0 chr1 16380733 16380791 -265812873 + AluSc SINE Alu 76 133 -176 2345 87 0 26 chr1 16380791 16381100 -265812564 + AluY SINE Alu 1 301 -10 27 0 0 0 chr1 16383958 16383985 -265809679 + AT_rich Low_complexity Low_complexity 1 27 0 1788 160 18 0 chr1 16385764 16386046 -265807618 - AluSx SINE Alu -25 287 1 2193 134 0 0 chr1 16386219 16386525 -265807139 - AluSq SINE Alu -7 306 1 2207 97 26 19 chr1 16387207 16387515 -265806149 + AluSx SINE Alu 3 312 0 1601 137 8 17 chr1 16387537 16387778 -265805886 + AluSq SINE Alu 1 239 -74 2529 61 0 0 chr1 16388156 16388450 -265805214 - AluY SINE Alu -17 294 1 2315 89 10 7 chr1 16388934 16389237 -265804427 - AluSx SINE Alu -8 304 1 1510 152 83 25 chr1 16389468 16389745 -265803919 - AluJo SINE Alu -15 297 5 2157 130 0 0 chr1 16390860 16391152 -265802512 + AluSg SINE Alu 1 292 -18 1123 153 6 0 chr1 16391903 16392073 -265801591 - AluSg/x SINE Alu -13 299 129 2470 75 0 3 chr1 16392285 16392590 -265801074 - AluY SINE Alu -7 304 1 1776 154 29 16 chr1 16393204 16393510 -265800154 - AluSx SINE Alu -2 310 1 316 87 0 0 chr1 16393682 16393728 -265799936 - Alu SINE Alu -3 297 252 1722 153 25 4 chr1 16395471 16395752 -265797912 - AluJo SINE Alu -25 287 1 2476 57 0 47 chr1 16395756 16396074 -265797590 - AluY SINE Alu -8 303 1 249 133 44 0 chr1 16396171 16396216 -265797448 + Alu SINE Alu 270 316 -4 2029 109 3 24 chr1 16396222 16396515 -265797149 + AluSx SINE Alu 4 290 -22 953 123 0 0 chr1 16396577 16396715 -265796949 - AluSg/x SINE Alu -1 311 174 2263 118 0 10 chr1 16396790 16397103 -265796561 - AluSx SINE Alu -2 310 1 2194 107 10 0 chr1 16397118 16397409 -265796255 - AluSp SINE Alu -19 294 1 2160 140 0 6 chr1 16397630 16397945 -265795719 - AluSq SINE Alu 0 313 1 2195 109 0 20 chr1 16398190 16398494 -265795170 - AluSx SINE Alu -14 298 1 1960 84 0 0 chr1 16398772 16399009 -265794655 - AluSg SINE Alu -73 237 1 473 119 95 0 chr1 16399038 16399122 -265794542 - AluSg/x SINE Alu -8 304 213 1489 184 57 3 chr1 16399124 16399423 -265794241 - L1MB8 LINE L1 -38 6140 5826 456 100 0 0 chr1 16399431 16399491 -265794173 - Charlie5 DNA MER1_type -2546 66 7 1535 167 27 38 chr1 16399678 16399832 -265793832 - AluJo SINE Alu -20 292 141 2488 61 3 0 chr1 16399832 16400129 -265793535 - AluY SINE Alu -13 298 1 1535 167 27 38 chr1 16400129 16400267 -265793397 - AluJo SINE Alu -171 141 3 598 109 85 73 chr1 16400402 16400492 -265793172 + Charlie5 DNA MER1_type 2457 2551 -73 2419 77 0 13 chr1 16400492 16400803 -265792861 - AluY SINE Alu -4 307 1 598 109 85 73 chr1 16400803 16400877 -265792787 + Charlie5 DNA MER1_type 2551 2623 -1 26 0 0 0 chr1 16401262 16401288 -265792376 + AT_rich Low_complexity Low_complexity 1 26 0 2221 102 3 0 chr1 16401296 16401604 -265792060 + AluSq SINE Alu 1 309 0 400 111 0 0 chr1 16402168 16402231 -265791433 + FAM SINE Alu 115 177 -2 1730 135 12 12 chr1 16402242 16402501 -265791163 + AluSx SINE Alu 9 267 -45 2248 84 20 0 chr1 16403016 16403312 -265790352 - AluSc SINE Alu -7 302 1 1652 143 121 44 chr1 16403357 16403399 -265790265 - L1MB3 LINE L1 0 6183 6146 2379 79 3 0 chr1 16403399 16403691 -265789973 - AluSp SINE Alu -10 303 11 1652 143 121 44 chr1 16403691 16404013 -265789651 - L1MB3 LINE L1 -37 6146 5791 2216 112 3 13 chr1 16404158 16404463 -265789201 - AluSx SINE Alu -10 302 1 2222 117 7 0 chr1 16404667 16404975 -265788689 - AluSx SINE Alu -2 310 1 1271 178 0 5 chr1 16405247 16405460 -265788204 + AluJo SINE Alu 84 295 -17 2167 104 3 17 chr1 16405676 16405835 -265787829 - AluSx SINE Alu -19 293 138 2190 105 10 7 chr1 16405835 16406141 -265787523 - AluSp SINE Alu -6 307 1 1084 95 0 7 chr1 16406141 16406278 -265787386 - AluSq/x SINE Alu -177 136 1 333 0 0 0 chr1 16406653 16406690 -265786974 + (TG)n Simple_repeat Simple_repeat 2 38 0 3566 137 72 25 chr1 16406690 16407027 -265786637 - L1MB3 LINE L1 -27 6156 5837 2323 111 0 9 chr1 16407027 16407342 -265786322 - AluSx SINE Alu 0 312 1 3566 137 72 25 chr1 16407342 16407641 -265786023 - L1MB3 LINE L1 -346 5837 5482 1932 148 0 28 chr1 16407641 16407958 -265785706 - AluJb SINE Alu -3 309 2 3566 137 72 25 chr1 16407958 16408012 -265785652 - L1MB3 LINE L1 -701 5482 5432 502 198 74 0 chr1 16408017 16408138 -265785526 - FLAM_A SINE Alu 0 142 13 630 128 83 0 chr1 16408141 16408302 -265785362 - L1MB3 LINE L1 -727 5439 5268 1959 135 7 0 chr1 16408311 16408625 -265785039 - AluSx SINE Alu 0 316 1 504 168 204 36 chr1 16409250 16409387 -265784277 - MER20 DNA MER1_type 0 219 60 218 274 103 77 chr1 16409389 16409506 -265784158 - MIR3 SINE MIR -14 194 75 1079 198 146 22 chr1 16409549 16409817 -265783847 + AluJb SINE Alu 2 302 0 23 0 0 0 chr1 16409817 16409840 -265783824 + AT_rich Low_complexity Low_complexity 1 23 0 1711 162 19 42 chr1 16409840 16410149 -265783515 + AluSx SINE Alu 1 302 -10 261 196 179 9 chr1 16410236 16410348 -265783316 - Charlie1 DNA MER1_type -6 2755 2625 627 226 13 6 chr1 16410385 16410399 -265783265 - Charlie1 DNA MER1_type -258 2503 2491 2262 126 7 0 chr1 16410399 16410708 -265782956 - AluSx SINE Alu -1 311 1 627 226 13 6 chr1 16410708 16410852 -265782812 - Charlie1 DNA MER1_type -270 2491 2344 872 135 15 8 chr1 16411009 16411142 -265782522 + AluJo SINE Alu 1 134 -178 1283 171 60 0 chr1 16411907 16412124 -265781540 - AluJb SINE Alu -51 261 32 611 136 82 27 chr1 16412154 16412264 -265781400 - FLAM_A SINE Alu -17 116 1 25 0 0 0 chr1 16412501 16412526 -265781138 + AT_rich Low_complexity Low_complexity 1 25 0 2017 99 92 0 chr1 16412675 16412957 -265780707 + AluSq SINE Alu 1 308 -5 626 121 0 0 chr1 16413146 16413229 -265780435 - AluS SINE Alu -226 86 4 2174 140 3 0 chr1 16413359 16413667 -265779997 - AluSq SINE Alu -4 309 1 2387 112 0 0 chr1 16413688 16414001 -265779663 - AluSq SINE Alu 0 313 1 2380 90 0 7 chr1 16414053 16414352 -265779312 - AluSc SINE Alu -12 297 1 2074 137 6 16 chr1 16414928 16415242 -265778422 - AluSx SINE Alu 0 312 2 1798 150 36 20 chr1 16415245 16415551 -265778113 - AluJo SINE Alu -1 311 1 2136 121 21 0 chr1 16415679 16415969 -265777695 + AluSx SINE Alu 1 296 -16 180 111 0 0 chr1 16416689 16416716 -265776948 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 815 168 0 0 chr1 16416718 16416843 -265776821 - FLAM_C SINE Alu -8 125 1 222 246 109 55 chr1 16416850 16416895 -265776769 - MIR SINE MIR -13 249 208 2079 119 24 3 chr1 16416895 16417189 -265776475 - AluSc SINE Alu -5 304 5 222 246 109 55 chr1 16417189 16417253 -265776411 - MIR SINE MIR -54 208 134 224 325 90 0 chr1 16417374 16417483 -265776181 - MIR SINE MIR -78 130 11 2716 42 3 0 chr1 16418323 16418631 -265775033 + AluY SINE Alu 1 309 -2 464 245 138 86 chr1 16418969 16419296 -265774368 - L1MC4 LINE L1 -1 8041 7698 525 178 30 0 chr1 16419376 16419477 -265774187 + U13 snRNA snRNA 1 104 0 2411 112 0 0 chr1 16420158 16420470 -265773194 + AluSx SINE Alu 1 312 0 276 232 14 29 chr1 16420710 16420779 -265772885 + MER5A DNA MER1_type 38 105 -84 207 0 0 0 chr1 16421930 16421953 -265771711 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 869 197 0 20 chr1 16421953 16422105 -265771559 - AluJb SINE Alu -30 282 134 967 215 142 11 chr1 16422105 16422366 -265771298 + AluSg1 SINE Alu 15 309 0 2338 110 0 3 chr1 16423020 16423328 -265770336 + AluSq SINE Alu 1 307 -6 1488 179 82 0 chr1 16423708 16423976 -265769688 + AluJb SINE Alu 1 290 -22 1786 169 0 22 chr1 16424005 16424318 -265769346 - AluJb SINE Alu -6 306 1 1428 161 0 9 chr1 16424978 16425208 -265768456 - AluJb SINE Alu 0 312 85 1899 150 3 7 chr1 16425324 16425618 -265768046 + AluJb SINE Alu 1 293 -19 2210 106 3 3 chr1 16425874 16426167 -265767497 - AluSq SINE Alu -18 295 3 189 0 0 0 chr1 16426621 16426642 -265767022 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2059 138 27 0 chr1 16426700 16426998 -265766666 - AluSq SINE Alu -7 306 1 2188 104 26 16 chr1 16428532 16428840 -265764824 - AluSx SINE Alu 0 312 2 35 24 0 0 chr1 16429212 16429254 -265764410 + AT_rich Low_complexity Low_complexity 1 42 0 2336 87 0 13 chr1 16429523 16429822 -265763842 + AluSx SINE Alu 1 295 -17 1735 180 32 0 chr1 16431110 16431393 -265762271 - AluJb SINE Alu -20 292 1 26 0 0 0 chr1 16431550 16431576 -265762088 + AT_rich Low_complexity Low_complexity 1 26 0 2411 88 0 0 chr1 16432153 16432447 -265761217 - AluSg SINE Alu -16 294 1 2326 104 3 0 chr1 16432940 16433239 -265760425 - AluSp SINE Alu -13 300 1 24 53 0 0 chr1 16434037 16434075 -265759589 + AT_rich Low_complexity Low_complexity 1 38 0 664 176 109 0 chr1 16434075 16434194 -265759470 - FLAM_C SINE Alu 0 133 2 276 30 0 0 chr1 16434575 16434593 -265759071 + (CA)n Simple_repeat Simple_repeat 1 18 -300 1677 128 12 19 chr1 16434593 16434850 -265758814 + AluSx SINE Alu 1 255 -57 276 30 0 0 chr1 16434850 16434860 -265758804 + (CA)n Simple_repeat Simple_repeat 17 318 0 276 30 0 0 chr1 16434860 16434893 -265758771 + (CA)n Simple_repeat Simple_repeat 2 34 0 421 248 97 0 chr1 16435058 16435171 -265758493 - L2 LINE L2 -1 3312 3189 2437 87 0 0 chr1 16435171 16435471 -265758193 - AluY SINE Alu -11 300 1 290 294 118 15 chr1 16435775 16435911 -265757753 - MIR SINE MIR -9 253 104 587 171 271 52 chr1 16436175 16436426 -265757238 - MER33 DNA MER1_type 0 324 19 258 231 0 0 chr1 16444443 16444508 -265749156 + C-rich Low_complexity Low_complexity 3 67 0 1782 158 20 27 chr1 16444838 16445135 -265748529 + AluJb SINE Alu 1 295 -17 945 122 0 0 chr1 16445135 16445258 -265748406 + AluSq/x SINE Alu 2 124 -189 1904 126 20 40 chr1 16446593 16446895 -265746769 - AluSx SINE Alu -16 296 1 26 0 0 0 chr1 16446994 16447020 -265746644 + AT_rich Low_complexity Low_complexity 1 26 0 209 57 29 0 chr1 16448569 16448604 -265745060 + (TA)n Simple_repeat Simple_repeat 1 36 0 234 234 0 0 chr1 16453613 16453660 -265740004 + CT-rich Low_complexity Low_complexity 1 47 0 334 238 12 25 chr1 16454901 16454981 -265738683 - L2 LINE L2 0 3313 3235 185 74 0 0 chr1 16455316 16455343 -265738321 - MIR SINE MIR -72 136 110 402 200 88 40 chr1 16456168 16456293 -265737371 + MIR SINE MIR 39 169 -93 260 186 17 0 chr1 16459762 16459821 -265733843 + GA-rich Low_complexity Low_complexity 4 63 0 373 296 89 10 chr1 16460997 16461200 -265732464 + MLT1H LTR MaLR 82 300 -249 282 189 0 0 chr1 16461396 16461449 -265732215 + MLT1G LTR MaLR 537 589 -1 915 150 8 0 chr1 16461659 16461792 -265731872 - AluJb SINE Alu -178 134 1 237 253 13 27 chr1 16462287 16462362 -265731302 + MIR SINE MIR 175 248 -14 1800 141 41 10 chr1 16463056 16463347 -265730317 + AluJb SINE Alu 1 300 -12 2252 95 3 0 chr1 16463352 16463659 -265730005 + AluSx SINE Alu 1 308 0 366 150 0 43 chr1 16464147 16464354 -265729310 + AluJo SINE Alu 1 280 -22 434 266 138 45 chr1 16465240 16465378 -265728286 - L2 LINE L2 -106 3207 3083 2429 88 3 3 chr1 16465378 16465686 -265727978 + AluSg SINE Alu 1 308 -2 434 266 138 45 chr1 16465686 16465859 -265727805 - L2 LINE L2 -230 3083 2867 905 310 109 13 chr1 16465908 16466430 -265727234 - L2 LINE L2 -418 2896 2325 232 315 37 28 chr1 16466435 16466543 -265727121 - L2 LINE L2 -1093 2221 2113 * 240 253 138 11 chr1 16466514 16466601 -265727063 + MIR SINE MIR 49 146 -116 667 129 12 35 chr1 16467960 16468131 -265725533 + GA-rich Low_complexity Low_complexity 3 169 0 893 172 0 7 chr1 16468131 16468282 -265725382 + FRAM SINE Alu 1 40 0 237 265 10 59 chr1 16468726 16468828 -265724836 + MIR SINE MIR 110 206 -56 1505 127 0 5 chr1 16469394 16469607 -265724057 + AluJb SINE Alu 85 296 -16 1753 163 0 14 chr1 16470403 16470722 -265722942 + AluJb SINE Alu 3 317 0 224 300 50 30 chr1 16470959 16471059 -265722605 - MIR SINE MIR -81 181 80 1139 150 12 0 chr1 16471282 16471455 -265722209 + FAM SINE Alu 1 47 -2 824 179 15 0 chr1 16471460 16471594 -265722070 + AluJo SINE Alu 1 136 -176 248 217 141 22 chr1 16471702 16471794 -265721870 + L1ME3 LINE L1 7 109 -6010 1661 146 19 71 chr1 16472308 16472630 -265721034 + AluJo SINE Alu 6 310 -2 335 265 20 33 chr1 16472756 16472907 -265720757 + L1ME3 LINE L1 4483 4631 -1498 2137 136 3 0 chr1 16472915 16473216 -265720448 + AluJb SINE Alu 1 302 -10 2382 77 7 7 chr1 16473313 16473612 -265720052 + AluSg SINE Alu 1 299 -11 1078 246 114 57 chr1 16473613 16474472 -265719192 + L1ME3 LINE L1 5147 6060 -85 934 83 0 30 chr1 16475279 16475395 -265718269 + FRAM SINE Alu 39 152 -160 198 0 0 0 chr1 16475395 16475417 -265718247 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 934 83 0 30 chr1 16475417 16475432 -265718232 + FRAM SINE Alu 152 166 -10 1785 161 0 4 chr1 16475586 16475865 -265717799 + AluJb SINE Alu 15 292 -20 762 196 0 0 chr1 16475876 16476009 -265717655 + FLAM_C SINE Alu 1 133 0 769 268 13 21 chr1 16476175 16476410 -265717254 - MIR SINE MIR -28 234 2 902 177 111 5 chr1 16476410 16476608 -265717056 + MER20 DNA MER1_type 1 219 0 279 349 47 0 chr1 16476803 16476932 -265716732 - L2 LINE L2 -2 3270 3136 3345 123 5 49 chr1 16477400 16477951 -265715713 + MER1A DNA MER1_type 1 527 -2 1161 103 58 0 chr1 16478871 16479027 -265714637 - AluY SINE Alu -14 297 133 2430 91 0 0 chr1 16479027 16479324 -265714340 - AluSg SINE Alu -13 297 1 331 258 10 62 chr1 16479800 16479897 -265713767 - L1MC4 LINE L1 -1339 6703 6612 305 174 11 33 chr1 16479897 16479989 -265713675 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 313 239 33 43 chr1 16479991 16480083 -265713581 - L1MC4 LINE L1 -1339 6703 6613 271 229 193 28 chr1 16480174 16480283 -265713381 - MIR SINE MIR -36 226 100 244 279 128 0 chr1 16480645 16480731 -265712933 + L2 LINE L2 3216 3312 -1 618 288 39 43 chr1 16480999 16481256 -265712408 + MLT1J LTR MaLR 206 461 -50 219 222 19 0 chr1 16481678 16481732 -265711932 + MIR SINE MIR 196 250 -12 258 250 70 20 chr1 16481732 16481832 -265711832 - L2 LINE L2 -30 3242 3138 608 304 159 5 chr1 16481991 16482363 -265711301 + L2 LINE L2 2289 2717 -597 2060 137 10 13 chr1 16482367 16482680 -265710984 + AluJo SINE Alu 1 312 0 1041 153 5 97 chr1 16482717 16482933 -265710731 - AluJo SINE Alu -116 196 1 2400 82 0 3 chr1 16483032 16483335 -265710329 - AluSx SINE Alu -10 302 1 440 304 127 18 chr1 16483639 16483859 -265709805 - MIR SINE MIR -2 260 17 226 208 26 26 chr1 16484198 16484275 -265709389 + (CCCG)n Simple_repeat Simple_repeat 2 78 0 758 237 64 5 chr1 16484725 16484944 -265708720 - MIR SINE MIR 0 262 31 417 404 29 3 chr1 16485074 16485386 -265708278 + L2 LINE L2 926 1245 -2069 2527 67 0 0 chr1 16485484 16485782 -265707882 - AluY SINE Alu -13 298 1 619 191 56 0 chr1 16485795 16485921 -265707743 - FLAM_A SINE Alu 0 133 1 5705 143 9 27 chr1 16485955 16486082 -265707582 - L1PB1 LINE L1 -2 6149 6021 2695 45 0 0 chr1 16486082 16486390 -265707274 - AluY SINE Alu -3 308 1 5705 143 9 27 chr1 16486390 16487080 -265706584 - L1PB1 LINE L1 -130 6021 5366 1924 107 29 58 chr1 16487080 16487390 -265706274 + AluSx SINE Alu 1 301 -11 5705 143 9 27 chr1 16487390 16488116 -265705548 - L1PB1 LINE L1 -785 5366 4628 361 159 0 68 chr1 16488164 16488252 -265705412 - L1PA8 LINE L1 -1 6171 6090 2008 142 3 17 chr1 16488302 16488597 -265705067 + AluJo SINE Alu 1 291 -21 2721 146 27 14 chr1 16488604 16489064 -265704600 - MER49 LTR ERV1 -312 611 142 2307 95 0 0 chr1 16489064 16489394 -265704270 + AluSx SINE Alu 1 330 0 2721 146 27 14 chr1 16489394 16489418 -265704246 - MER49 LTR ERV1 -781 142 120 1560 91 5 5 chr1 16489418 16489637 -265704027 - THE1C LTR MaLR 0 375 157 650 162 77 0 chr1 16489640 16489757 -265703907 + AluSq/x SINE Alu 2 127 -185 1158 85 2 51 chr1 16489772 16489969 -265703695 - THE1C LTR MaLR -164 191 1 864 137 0 0 chr1 16489969 16490093 -265703571 - MER49 LTR ERV1 -799 124 1 2485 136 14 16 chr1 16490093 16490528 -265703136 - L1MB1 LINE L1 -248 5920 5487 2449 79 3 0 chr1 16490694 16490986 -265702678 + AluSp SINE Alu 2 294 -19 636 269 94 71 chr1 16492567 16492677 -265700987 - L1MC5 LINE L1 -45 7916 7810 2338 123 0 0 chr1 16492677 16492987 -265700677 - AluSx SINE Alu -2 310 1 636 269 94 71 chr1 16492987 16493471 -265700193 - L1MC5 LINE L1 -151 7810 7308 2124 134 3 3 chr1 16493472 16493770 -265699894 - AluSx SINE Alu -14 298 1 1847 174 6 16 chr1 16493789 16494100 -265699564 - AluJo SINE Alu -4 308 1 534 240 50 42 chr1 16494220 16494440 -265699224 - L1MC4 LINE L1 -760 7201 7032 * 2031 152 51 88 chr1 16494435 16494785 -265698879 - L1MB7 LINE L1 0 6184 5823 2055 127 3 3 chr1 16494785 16495076 -265698588 - AluSx SINE Alu -21 291 1 2031 152 51 88 chr1 16495076 16495253 -265698411 - L1MB7 LINE L1 -361 5823 5675 2165 125 0 7 chr1 16495253 16495558 -265698106 - AluSx SINE Alu -9 303 1 2031 152 51 88 chr1 16495558 16495574 -265698090 - L1MB7 LINE L1 -509 5675 5660 317 317 45 12 chr1 16495572 16495818 -265697846 - L1MC4 LINE L1 -1850 5958 5705 * 1216 123 0 0 chr1 16495834 16495996 -265697668 - AluSq SINE Alu -151 162 1 2237 126 0 3 chr1 16496107 16496417 -265697247 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 16496463 16496485 -265697179 + AT_rich Low_complexity Low_complexity 1 22 0 2423 80 10 0 chr1 16496962 16497262 -265696402 + AluSx SINE Alu 3 305 -7 329 247 11 11 chr1 16497404 16497578 -265696086 + CT-rich Low_complexity Low_complexity 2 175 0 301 316 123 12 chr1 16502946 16503190 -265690474 + HERVL LTR ERVL 4044 4314 -1340 243 214 308 25 chr1 16503517 16503676 -265689988 - L1ME3A LINE L1 -52 6118 5915 622 212 16 54 chr1 16503693 16503842 -265689822 - L1MD3 LINE L1 0 7995 7853 1701 168 10 17 chr1 16503842 16504133 -265689531 + AluJo SINE Alu 1 289 -23 622 212 16 54 chr1 16504133 16504167 -265689497 - L1MD3 LINE L1 -142 7853 7819 320 271 49 8 chr1 16504206 16504328 -265689336 - L1MC3 LINE L1 -163 7622 7496 839 199 14 66 chr1 16504328 16504457 -265689207 - Tigger3(Golem) DNA MER2_type -98 2931 2815 2137 98 0 50 chr1 16504457 16504778 -265688886 + AluSq SINE Alu 1 306 0 839 199 14 66 chr1 16504778 16504858 -265688806 - Tigger3(Golem) DNA MER2_type -214 2815 2732 678 205 0 0 chr1 16504858 16504975 -265688689 + FLAM_C SINE Alu 1 117 -16 419 244 0 0 chr1 16505016 16505098 -265688566 - Tigger3(Golem) DNA MER2_type -2947 82 1 944 159 6 6 chr1 16505099 16505256 -265688408 - MER2 DNA MER2_type -188 157 1 608 216 50 0 chr1 16505394 16505533 -265688131 + MIR SINE MIR 47 192 -70 196 296 0 0 chr1 16506294 16506348 -265687316 - MIR SINE MIR -173 89 36 618 283 38 13 chr1 16506358 16506665 -265686999 + L2 LINE L2 2745 3057 -256 234 130 0 0 chr1 16507330 16507376 -265686288 + Alu SINE Alu 258 303 0 607 175 0 10 chr1 16507381 16507478 -265686186 + AluJ/FLAM SINE Alu 2 97 -215 757 289 134 21 chr1 16507482 16507976 -265685688 - L2 LINE L2 -302 3011 2463 2114 92 7 0 chr1 16508019 16508329 -265685335 - AluSp SINE Alu 0 312 1 670 186 0 0 chr1 16508398 16508511 -265685153 - FLAM_C SINE Alu -19 124 12 2058 108 0 7 chr1 16508537 16508844 -265684820 + AluSg SINE Alu 1 305 0 934 155 0 0 chr1 16508849 16508997 -265684667 + AluJo SINE Alu 87 234 -78 1110 120 0 0 chr1 16509016 16509174 -265684490 - AluJb SINE Alu -154 158 1 1877 240 42 4 chr1 16509177 16509652 -265684012 - L1MD3 LINE L1 -6 7989 7497 1981 131 0 23 chr1 16509686 16509991 -265683673 + AluSq SINE Alu 1 298 -15 1660 153 7 21 chr1 16509996 16510278 -265683386 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 16510357 16510380 -265683284 + AT_rich Low_complexity Low_complexity 1 23 0 1863 195 46 72 chr1 16510397 16510720 -265682944 - MLT1D LTR MaLR 0 505 198 2290 84 0 3 chr1 16510720 16511019 -265682645 - AluSx SINE Alu -13 299 2 1863 195 46 72 chr1 16511019 16511192 -265682472 - MLT1D LTR MaLR -307 198 22 282 261 35 9 chr1 16511210 16511325 -265682339 - MER113 DNA MER1_type? -317 204 87 1747 153 0 64 chr1 16511330 16511657 -265682007 + AluSx SINE Alu 6 311 -1 2117 99 3 0 chr1 16511671 16511981 -265681683 + AluSp SINE Alu 1 311 0 2344 90 0 0 chr1 16512004 16512314 -265681350 - AluY SINE Alu -1 310 1 2339 88 0 3 chr1 16512904 16513211 -265680453 + AluSg SINE Alu 1 306 -4 182 94 0 31 chr1 16513656 16513688 -265679976 + MIR SINE MIR 113 143 -119 559 253 154 0 chr1 16513718 16513880 -265679784 + MER5A DNA MER1_type 3 189 0 1553 166 53 11 chr1 16514065 16514349 -265679315 + AluJb SINE Alu 1 296 -16 486 320 111 48 chr1 16515001 16515317 -265678347 - L2 LINE L2 0 3313 2978 201 294 44 0 chr1 16515669 16515737 -265677927 - L2 LINE L2 -18 3295 3225 1780 153 24 3 chr1 16515913 16516208 -265677456 - AluJo SINE Alu -11 301 1 450 293 57 61 chr1 16516212 16516458 -265677206 - MIR SINE MIR -13 249 5 298 332 34 88 chr1 16516480 16516775 -265676889 - L2 LINE L2 -49 3223 2945 433 280 18 48 chr1 16516806 16516974 -265676690 - L2 LINE L2 0 3313 3151 303 289 146 57 chr1 16516963 16516983 -265676681 - L2 LINE L2 -475 2839 2822 * 2080 97 0 52 chr1 16516983 16517312 -265676352 + AluSx SINE Alu 1 312 0 303 289 146 57 chr1 16517312 16517537 -265676127 - L2 LINE L2 -492 2822 2572 583 288 43 5 chr1 16518035 16518219 -265675445 - MIR SINE MIR -71 191 1 1165 199 20 46 chr1 16519223 16519529 -265674135 + LTR37A LTR ERV1 58 355 -71 1598 192 10 82 chr1 16519533 16519704 -265673960 + L1MB7 LINE L1 5541 5670 -514 2151 86 4 0 chr1 16519704 16519982 -265673682 + AluSq SINE Alu 24 302 -11 1598 192 10 82 chr1 16519982 16520201 -265673463 + L1MB7 LINE L1 5670 5903 -281 1620 171 3 47 chr1 16520201 16520523 -265673141 - AluJb SINE Alu -4 308 1 1444 176 4 0 chr1 16520524 16520779 -265672885 - AluJb SINE Alu -15 297 42 464 284 159 10 chr1 16521167 16521368 -265672296 + MIR SINE MIR 32 262 0 300 268 41 10 chr1 16522034 16522131 -265671533 + MIR SINE MIR 48 147 -61 267 200 50 0 chr1 16522196 16522256 -265671408 + L2 LINE L2 3209 3271 -1 684 234 99 22 chr1 16526475 16526697 -265666967 + MIR SINE MIR 20 258 -4 275 308 51 0 chr1 16526973 16527051 -265666613 + MIR SINE MIR 92 173 -89 270 138 0 0 chr1 16527243 16527301 -265666363 + (CCCTG)n Simple_repeat Simple_repeat 3 60 0 2172 96 3 0 chr1 16527659 16527950 -265665714 + AluSx SINE Alu 1 292 -20 938 131 13 0 chr1 16527969 16528122 -265665542 - FRAM SINE Alu -22 154 1 2020 127 0 28 chr1 16528349 16528490 -265665174 + AluSq SINE Alu 1 144 -169 2064 113 10 0 chr1 16528490 16528782 -265664882 + AluSp SINE Alu 1 295 -18 2020 127 0 28 chr1 16528782 16528962 -265664702 + AluSq SINE Alu 144 313 0 208 340 21 0 chr1 16529017 16529111 -265664553 - MIR SINE MIR -65 197 102 2066 112 20 0 chr1 16529598 16529893 -265663771 - AluSx SINE Alu -11 301 1 746 139 47 39 chr1 16529895 16530024 -265663640 - AluJo/FLAM SINE Alu -172 130 1 1175 171 70 9 chr1 16530041 16530269 -265663395 - AluJo SINE Alu -69 243 2 2340 78 3 3 chr1 16530502 16530811 -265662853 + AluSq SINE Alu 1 309 -4 2035 122 0 38 chr1 16530815 16531134 -265662530 + AluSq SINE Alu 3 309 -4 222 329 12 0 chr1 16532010 16532092 -265661572 - MIR3 SINE MIR -45 163 81 1068 175 27 136 chr1 16533144 16533482 -265660182 + AluJo SINE Alu 1 301 -1 687 108 0 0 chr1 16533482 16533584 -265660080 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 261 222 19 0 chr1 16534095 16534149 -265659515 + MIR SINE MIR 116 170 -92 261 229 48 24 chr1 16534289 16534372 -265659292 - MIR SINE MIR -91 171 87 194 289 58 0 chr1 16535578 16535630 -265658034 - MIR SINE MIR -92 170 116 216 256 314 0 chr1 16535638 16535724 -265657940 + L2 LINE L2 3201 3313 0 * 263 299 19 37 chr1 16535723 16535830 -265657834 - MIR SINE MIR -140 122 18 449 196 88 0 chr1 16536010 16536112 -265657552 + MER90 LTR ERV1 488 598 -16 297 0 0 0 chr1 16536896 16536929 -265656735 + (TG)n Simple_repeat Simple_repeat 2 34 0 1318 147 0 26 chr1 16536929 16537150 -265656514 - AluJo SINE Alu -11 301 85 251 228 18 0 chr1 16537156 16537213 -265656451 - MIR SINE MIR -63 145 88 199 294 0 0 chr1 16537215 16537266 -265656398 + L2 LINE L2 3262 3312 -1 2532 226 32 4 chr1 16537485 16538042 -265655622 + MER90 LTR ERV1 3 575 0 1011 159 0 2 chr1 16538278 16538494 -265655170 + (CCA)n Simple_repeat Simple_repeat 1 396 0 247 294 198 16 chr1 16538509 16538635 -265655029 + MIR3 SINE MIR 6 154 -54 2158 104 3 0 chr1 16538704 16539002 -265654662 + AluSx SINE Alu 1 299 -13 2134 98 0 0 chr1 16539645 16539982 -265653682 + AluSx SINE Alu 2 312 0 616 267 125 51 chr1 16540022 16540397 -265653267 + L2 LINE L2 2868 3270 -2 815 156 0 8 chr1 16540675 16540803 -265652861 + FLAM_C SINE Alu 1 127 -6 203 204 0 19 chr1 16540803 16540857 -265652807 + T-rich Low_complexity Low_complexity 3 55 0 1728 148 44 7 chr1 16540886 16541184 -265652480 + AluJo SINE Alu 1 309 -3 1897 144 30 0 chr1 16541476 16541775 -265651889 + AluJb SINE Alu 1 308 -4 393 285 11 62 chr1 16541786 16541965 -265651699 + L1MEd LINE L1 544 713 -5406 1999 106 49 0 chr1 16541965 16542249 -265651415 + AluSx SINE Alu 1 298 -14 2133 91 0 20 chr1 16542311 16542608 -265651056 - AluSx SINE Alu -21 291 1 210 143 0 0 chr1 16542624 16542659 -265651005 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 2185 201 37 5 chr1 16542659 16543066 -265650598 - MER21B LTR ERV1 -427 436 17 1618 165 73 64 chr1 16543082 16543141 -265650523 + L1M4 LINE L1 5352 5409 -759 1177 154 92 141 chr1 16543141 16543325 -265650339 + MLT1A2 LTR MaLR 5 162 -212 1884 152 3 0 chr1 16543325 16543641 -265650023 - AluJb SINE Alu 0 312 1 1177 154 92 141 chr1 16543641 16543845 -265649819 + MLT1A2 LTR MaLR 162 374 0 1618 165 73 64 chr1 16543845 16544050 -265649614 + L1M4 LINE L1 5409 5611 -557 2324 75 0 0 chr1 16544050 16544344 -265649320 + AluY SINE Alu 1 294 -17 2010 147 0 0 chr1 16544353 16544660 -265649004 + AluSx SINE Alu 1 307 -5 1618 165 73 64 chr1 16544660 16544824 -265648840 + L1M4 LINE L1 5618 5782 -386 1946 142 0 0 chr1 16544825 16545155 -265648509 + AluSx SINE Alu 1 330 0 238 323 31 10 chr1 16545280 16545376 -265648288 + LTR34 LTR ERV1 269 366 -333 584 108 36 27 chr1 16545644 16545755 -265647909 + L1MB7 LINE L1 5785 5896 -282 865 191 6 0 chr1 16545758 16545915 -265647749 - AluJb SINE Alu -22 290 133 1874 136 0 11 chr1 16545935 16546246 -265647418 - AluSx SINE Alu 0 308 1 1029 132 84 0 chr1 16546246 16546436 -265647228 + L1MB7 LINE L1 5908 6113 -71 3964 89 0 8 chr1 16546439 16546954 -265646710 - MER9 LTR ERVK 0 511 1 16814 61 15 6 chr1 16546954 16549144 -265644520 - HERVK9 LTR ERVK 0 5916 3708 * 21745 63 2 1 chr1 16549142 16551925 -265641739 - HERVK9 LTR ERVK -3130 2786 1 3973 92 0 4 chr1 16551925 16552438 -265641226 - MER9 LTR ERVK 0 511 1 265 102 0 0 chr1 16552444 16552493 -265641171 + L1MB7 LINE L1 6117 6165 -19 810 97 0 0 chr1 16552545 16552648 -265641016 + AluSq/x SINE Alu 2 104 -208 756 107 0 0 chr1 16552940 16553043 -265640621 - FRAM SINE Alu -14 162 60 514 177 0 0 chr1 16553093 16553172 -265640492 + AluJ/FLAM SINE Alu 16 94 -218 622 278 25 0 chr1 16553689 16553851 -265639813 + MIR SINE MIR 9 174 -88 675 248 78 72 chr1 16553952 16554299 -265639365 - L2 LINE L2 -86 3227 2879 522 232 20 73 chr1 16554314 16554465 -265639199 - MER20 DNA MER1_type -74 145 3 1409 133 165 16 chr1 16554965 16555220 -265638444 - AluJo SINE Alu -18 294 2 186 43 0 0 chr1 16555307 16555330 -265638334 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 341 285 99 12 chr1 16555491 16555663 -265638001 - L1MD3 LINE L1 -102 7893 7707 846 199 14 66 chr1 16555663 16555792 -265637872 - Tigger3(Golem) DNA MER2_type -98 2930 2814 2005 98 0 50 chr1 16555792 16556113 -265637551 + AluSq SINE Alu 1 306 0 846 199 14 66 chr1 16556113 16556193 -265637471 - Tigger3(Golem) DNA MER2_type -214 2814 2731 719 205 0 0 chr1 16556193 16556310 -265637354 + FLAM_C SINE Alu 1 117 -16 417 244 0 0 chr1 16556351 16556433 -265637231 - Tigger3(Golem) DNA MER2_type -2947 82 1 941 159 6 6 chr1 16556434 16556591 -265637073 - MER2 DNA MER2_type -188 157 1 551 216 60 0 chr1 16556729 16556863 -265636801 + MIR SINE MIR 47 188 -74 217 311 22 33 chr1 16557582 16557672 -265635992 - MIR SINE MIR -138 124 36 708 284 72 5 chr1 16557682 16557986 -265635678 + L2 LINE L2 2745 3068 -245 182 326 12 47 chr1 16558571 16558657 -265635007 - L2 LINE L2 -6 3307 3225 594 184 0 10 chr1 16558691 16558789 -265634875 + AluJ/FLAM SINE Alu 1 97 -215 846 293 132 19 chr1 16558793 16559287 -265634377 - L2 LINE L2 -302 3011 2463 2184 81 7 0 chr1 16559330 16559636 -265634028 - AluSp SINE Alu 0 308 1 682 186 0 0 chr1 16559705 16559818 -265633846 - FLAM_C SINE Alu -19 124 12 2087 108 0 7 chr1 16559844 16560151 -265633513 + AluSg SINE Alu 1 305 0 936 181 0 0 chr1 16560156 16560311 -265633353 + AluJo SINE Alu 87 241 -71 1130 120 0 0 chr1 16560323 16560481 -265633183 - AluJb SINE Alu -154 158 1 1738 242 42 4 chr1 16560484 16560959 -265632705 - L1MD3 LINE L1 -6 7989 7497 2129 108 0 23 chr1 16560993 16561298 -265632366 + AluSq SINE Alu 1 298 -15 1672 160 7 21 chr1 16561303 16561585 -265632079 + AluJb SINE Alu 1 278 -34 23 0 0 0 chr1 16561664 16561687 -265631977 + AT_rich Low_complexity Low_complexity 1 23 0 1734 197 36 74 chr1 16561704 16562033 -265631631 - MLT1D LTR MaLR 0 505 200 2314 84 0 3 chr1 16562033 16562332 -265631332 - AluSx SINE Alu -13 299 2 1734 197 36 74 chr1 16562332 16562505 -265631159 - MLT1D LTR MaLR -305 200 22 257 254 33 16 chr1 16562523 16562638 -265631026 - MER113 DNA MER1_type? -317 204 85 1819 157 0 60 chr1 16562638 16562969 -265630695 + AluSx SINE Alu 1 311 -1 2170 95 3 0 chr1 16562983 16563293 -265630371 + AluSp SINE Alu 1 311 0 2404 84 0 0 chr1 16563316 16563626 -265630038 - AluY SINE Alu -1 310 1 2344 88 0 3 chr1 16564216 16564521 -265629143 + AluSg SINE Alu 1 304 -6 185 94 0 31 chr1 16564966 16564998 -265628666 + MIR SINE MIR 113 143 -119 613 210 161 6 chr1 16565028 16565190 -265628474 + MER5A DNA MER1_type 3 189 0 1597 166 53 11 chr1 16565375 16565659 -265628005 + AluJb SINE Alu 1 296 -16 522 320 111 48 chr1 16566311 16566627 -265627037 - L2 LINE L2 0 3313 2978 199 257 86 0 chr1 16566979 16567049 -265626615 - L2 LINE L2 -18 3295 3220 1819 153 24 3 chr1 16567224 16567519 -265626145 - AluJo SINE Alu -11 301 1 452 293 57 61 chr1 16567523 16567769 -265625895 - MIR SINE MIR -13 249 5 337 319 119 37 chr1 16567791 16568086 -265625578 - L2 LINE L2 -49 3264 2946 452 280 23 46 chr1 16568117 16568292 -265625372 - L2 LINE L2 0 3313 3143 322 298 143 49 chr1 16568274 16568294 -265625370 - L2 LINE L2 -475 2839 2822 * 1966 100 6 58 chr1 16568294 16568623 -265625041 + AluSx SINE Alu 1 312 0 322 298 143 49 chr1 16568623 16568847 -265624817 - L2 LINE L2 -492 2822 2572 629 283 43 5 chr1 16569345 16569529 -265624135 - MIR SINE MIR -71 191 1 1082 214 22 11 chr1 16570564 16570840 -265622824 + LTR37A LTR ERV1 77 355 -71 1529 202 19 30 chr1 16570844 16570991 -265622673 + L1MB7 LINE L1 5541 5688 -496 2182 90 17 7 chr1 16570991 16571290 -265622374 + AluSq SINE Alu 1 302 -11 1529 202 19 30 chr1 16571290 16571509 -265622155 + L1MB7 LINE L1 5688 5903 -281 1543 186 3 47 chr1 16571509 16571831 -265621833 - AluJb SINE Alu -4 308 1 1479 176 4 0 chr1 16571832 16572087 -265621577 - AluJb SINE Alu -15 297 42 491 289 159 10 chr1 16572475 16572676 -265620988 + MIR SINE MIR 32 262 0 322 268 41 10 chr1 16573341 16573438 -265620226 + MIR SINE MIR 48 147 -61 298 259 35 60 chr1 16573435 16573551 -265620113 + L2 LINE L2 3159 3271 -1 * 246 105 0 0 chr1 16577657 16577695 -265615969 + (GGA)n Simple_repeat Simple_repeat 2 39 0 278 270 155 40 chr1 16578656 16578804 -265614860 - MIR SINE MIR -70 192 28 211 257 97 53 chr1 16579856 16579969 -265613695 - MER5A DNA MER1_type -22 167 50 378 286 0 71 chr1 16580006 16580146 -265613518 - L2 LINE L2 -6 3266 3137 206 192 200 67 chr1 16580120 16580240 -265613424 - MIR3 SINE MIR -62 146 11 * 268 307 170 0 chr1 16580726 16580879 -265612785 + MIR SINE MIR 63 241 -21 320 349 81 15 chr1 16581142 16581340 -265612324 + MIR SINE MIR 27 237 -25 441 301 26 32 chr1 16583804 16583960 -265609704 + MIR3 SINE MIR 46 200 -8 669 247 47 16 chr1 16584202 16584392 -265609272 - MIR SINE MIR -32 230 35 184 316 40 0 chr1 16584976 16585052 -265608612 + MIR SINE MIR 67 145 -63 1607 147 22 67 chr1 16585095 16585407 -265608257 + AluJb SINE Alu 1 298 -14 2188 81 7 3 chr1 16585447 16585757 -265607907 - AluSq SINE Alu 0 312 2 28 0 0 0 chr1 16586623 16586651 -265607013 + GC_rich Low_complexity Low_complexity 1 28 0 301 194 30 0 chr1 16586730 16586797 -265606867 + MIR SINE MIR 103 171 -91 213 258 15 15 chr1 16587196 16587262 -265606402 + CT-rich Low_complexity Low_complexity 1 66 0 331 312 78 0 chr1 16588603 16588744 -265604920 - MIR SINE MIR -55 207 56 342 303 77 3 chr1 16589121 16589272 -265604392 + MIR SINE MIR 65 241 -21 189 280 67 0 chr1 16590514 16590589 -265603075 + MIR SINE MIR 49 128 -80 367 263 89 30 chr1 16590628 16590766 -265602898 - MIR3 SINE MIR -70 138 5 203 301 84 12 chr1 16590907 16590990 -265602674 + MIR3 SINE MIR 97 185 -23 506 250 47 27 chr1 16591613 16591761 -265601903 + MIR SINE MIR 38 188 -74 199 325 9 38 chr1 16592454 16592560 -265601104 + MIR SINE MIR 8 109 -105 373 290 14 36 chr1 16595235 16595373 -265598291 + MIR3 SINE MIR 24 158 -50 575 246 123 0 chr1 16595551 16595730 -265597934 + MIR SINE MIR 45 245 -17 334 275 122 8 chr1 16595801 16595932 -265597732 - MIR3 SINE MIR -58 150 5 1660 114 65 30 chr1 16597569 16597697 -265595967 + AluSx SINE Alu 3 125 -187 612 0 0 0 chr1 16597697 16597765 -265595899 + (CA)n Simple_repeat Simple_repeat 2 69 0 1660 114 65 30 chr1 16597765 16597898 -265595766 + AluSx SINE Alu 125 273 -39 513 258 78 88 chr1 16598302 16598472 -265595192 + LTR16A1 LTR ERVL 59 229 -228 2107 139 0 0 chr1 16598472 16598782 -265594882 + AluSx SINE Alu 1 310 -2 513 258 78 88 chr1 16598782 16599010 -265594654 + LTR16A1 LTR ERVL 229 453 -4 467 305 57 23 chr1 16599964 16600141 -265593523 + MIR SINE MIR 46 228 -34 1962 125 50 0 chr1 16600638 16600935 -265592729 - AluSx SINE Alu 0 312 1 257 288 176 7 chr1 16602487 16602640 -265591024 + MIR SINE MIR 63 241 -21 324 343 81 15 chr1 16602903 16603101 -265590563 + MIR SINE MIR 27 237 -25 246 62 0 0 chr1 16604057 16604089 -265589575 + (CA)n Simple_repeat Simple_repeat 1 32 0 461 308 27 0 chr1 16605504 16605650 -265588014 + MIR3 SINE MIR 51 200 -8 670 247 47 16 chr1 16605900 16606090 -265587574 - MIR SINE MIR -32 230 35 237 194 129 16 chr1 16606446 16606508 -265587156 - MIR SINE MIR -62 146 78 198 326 11 22 chr1 16606757 16606849 -265586815 + MIR SINE MIR 55 145 -63 1584 180 3 11 chr1 16606867 16607186 -265586478 + AluJo SINE Alu 1 317 0 1439 215 24 0 chr1 16607199 16607487 -265586177 + AluJo SINE Alu 1 295 -17 257 284 74 0 chr1 16608525 16608606 -265585058 + MIR SINE MIR 83 169 -93 204 291 0 47 chr1 16609006 16609092 -265584572 + CT-rich Low_complexity Low_complexity 4 85 0 403 275 101 0 chr1 16610359 16610497 -265583167 - MIR SINE MIR -55 207 56 367 287 37 0 chr1 16610862 16610970 -265582694 + MIR3 SINE MIR 60 171 -37 182 301 48 29 chr1 16612213 16612316 -265581348 + MIR SINE MIR 24 128 -80 384 246 89 30 chr1 16612355 16612493 -265581171 - MIR3 SINE MIR -70 138 5 181 265 41 0 chr1 16612635 16612684 -265580980 + MIR SINE MIR 95 145 -117 1922 144 10 0 chr1 16612742 16613033 -265580631 - AluSx SINE Alu -18 294 1 503 250 47 27 chr1 16613543 16613691 -265579973 + MIR SINE MIR 38 188 -74 378 284 37 0 chr1 16614045 16614154 -265579510 - MER91A DNA MER1_type -82 114 2 259 348 0 0 chr1 16614177 16614266 -265579398 + MIR SINE MIR 69 157 -105 331 221 18 80 chr1 16614930 16615043 -265578621 + MIR SINE MIR 65 170 -92 245 345 0 27 chr1 16615714 16615824 -265577840 + MIR3 SINE MIR 13 119 -89 319 294 29 37 chr1 16618491 16618627 -265575037 + MIR3 SINE MIR 24 158 -50 582 256 117 0 chr1 16618805 16618985 -265574679 + MIR SINE MIR 45 245 -17 333 304 22 37 chr1 16619056 16619191 -265574473 - MIR SINE MIR -58 150 18 657 257 120 44 chr1 16621141 16621507 -265572157 + LTR16A1 LTR ERVL 61 454 -3 21 0 0 0 chr1 16622084 16622105 -265571559 + GC_rich Low_complexity Low_complexity 1 21 0 445 322 51 17 chr1 16622472 16622649 -265571015 + MIR SINE MIR 46 228 -34 345 261 60 37 chr1 16622772 16622906 -265570758 + L1MCa LINE L1 1944 2080 -4346 350 317 177 58 chr1 16623538 16625126 -265568538 + L2 LINE L2 868 2644 -670 266 324 120 12 chr1 16625312 16625553 -265568111 + LTR16A1 LTR ERVL 161 427 -30 2087 107 45 0 chr1 16625602 16625892 -265567772 - AluSx SINE Alu -9 303 1 210 283 17 0 chr1 16626165 16626225 -265567439 + MIR SINE MIR 81 141 -67 180 111 0 0 chr1 16626320 16626347 -265567317 + (GAATG)n Simple_repeat Simple_repeat 3 29 0 231 218 55 0 chr1 16626347 16626402 -265567262 - MER112 DNA MER1_type -113 147 90 261 224 30 0 chr1 16626462 16626529 -265567135 - MER112 DNA MER1_type -185 75 7 207 355 233 15 chr1 16627385 16627647 -265566017 - L3b LINE CR1 -159 1424 1106 202 274 51 86 chr1 16627684 16627801 -265565863 - MIR3 SINE MIR -89 119 7 247 278 44 0 chr1 16627938 16628028 -265565636 + MIR SINE MIR 48 141 -121 724 282 31 54 chr1 16628648 16628907 -265564757 - MIR SINE MIR -8 254 2 195 352 148 23 chr1 16628975 16629063 -265564601 + L2 LINE L2 3125 3223 -49 1760 150 21 11 chr1 16629476 16629763 -265563901 - AluJo SINE Alu -17 295 6 350 309 229 5 chr1 16629811 16629999 -265563665 + MIR SINE MIR 27 256 -6 870 104 0 56 chr1 16630215 16630359 -265563305 + AluJo SINE Alu 1 136 -176 932 248 9 14 chr1 16630373 16630587 -265563077 - MIR SINE MIR 0 262 50 509 342 13 6 chr1 16630963 16631121 -265562543 + MIR SINE MIR 8 166 -96 285 349 30 8 chr1 16631769 16631901 -265561763 + L2 LINE L2 3138 3272 0 196 325 26 0 chr1 16632160 16632237 -265561427 - MIR SINE MIR -112 150 72 426 317 6 22 chr1 16632484 16632667 -265560997 + (CA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr1 16632706 16632729 -265560935 + (CA)n Simple_repeat Simple_repeat 2 24 0 2278 84 0 40 chr1 16632949 16633096 -265560568 + AluSx SINE Alu 1 152 -160 2083 100 30 10 chr1 16633096 16633395 -265560269 + AluSq SINE Alu 1 305 -8 2278 84 0 40 chr1 16633395 16633569 -265560095 + AluSx SINE Alu 152 309 -3 712 255 99 5 chr1 16633733 16633945 -265559719 + MIR SINE MIR 13 244 -18 211 244 0 0 chr1 16634047 16634088 -265559576 - L2 LINE L2 -5 3308 3268 590 183 70 0 chr1 16634693 16634808 -265558856 - MIR SINE MIR -56 152 30 187 163 0 93 chr1 16635688 16635731 -265557933 + L2 LINE L2 3272 3310 -3 534 296 36 109 chr1 16635807 16636192 -265557472 - L2 LINE L2 -1 3271 2915 249 125 25 0 chr1 16686352 16686392 -265507272 - Alu SINE Alu -264 44 4 248 294 67 8 chr1 16686636 16686755 -265506909 + MIR3 SINE MIR 34 159 -49 319 268 134 43 chr1 16687035 16687199 -265506465 + HAL1 LINE L1 1121 1299 -1208 198 274 0 16 chr1 16688157 16688219 -265505445 - L3b LINE CR1 -217 1366 1306 2141 127 0 0 chr1 16688355 16688655 -265505009 + AluSx SINE Alu 1 300 -12 481 288 15 0 chr1 16688873 16689005 -265504659 - L2 LINE L2 -11 3302 3169 260 300 77 23 chr1 16689053 16689183 -265504481 + L2 LINE L2 2965 3101 -171 1296 264 95 45 chr1 16689201 16689841 -265503823 - L1ME3 LINE L1 -2 6160 5489 911 147 15 0 chr1 16689982 16690118 -265503546 + AluSg/x SINE Alu 136 273 -39 825 131 31 0 chr1 16690121 16690281 -265503383 + GA-rich Low_complexity Low_complexity 3 167 0 225 325 179 0 chr1 16691023 16691174 -265502490 - L3 LINE CR1 -10 1567 1390 371 270 79 85 chr1 16691177 16691366 -265502298 - MIR SINE MIR 0 262 75 504 273 81 29 chr1 16691549 16691721 -265501943 + MER5A DNA MER1_type 7 187 -2 1600 112 155 4 chr1 16691755 16692013 -265501651 + AluSx SINE Alu 1 297 -15 252 163 20 20 chr1 16692873 16692922 -265500742 - L2 LINE L2 -229 3043 2995 978 236 4 54 chr1 16693154 16693276 -265500388 + MIR SINE MIR 29 135 -127 2206 81 20 3 chr1 16693276 16693571 -265500093 + AluSx SINE Alu 1 300 -12 978 236 4 54 chr1 16693571 16693689 -265499975 + MIR SINE MIR 135 257 -5 219 241 19 0 chr1 16693710 16693764 -265499900 + (CTCA)n Simple_repeat Simple_repeat 2 56 0 542 299 123 0 chr1 16694457 16694644 -265499020 - MIR SINE MIR -12 250 41 560 138 55 9 chr1 16694780 16694889 -265498775 - L1MB3 LINE L1 -68 6115 6002 2120 100 3 13 chr1 16694922 16695248 -265498416 + AluSq SINE Alu 1 313 0 516 293 29 46 chr1 16695248 16695422 -265498242 + MIR SINE MIR 89 259 -3 207 250 261 0 chr1 16695711 16695803 -265497861 - MIR SINE MIR -119 143 28 218 130 43 43 chr1 16695885 16695931 -265497733 - MIR SINE MIR -117 145 100 536 231 36 107 chr1 16696260 16696338 -265497326 + MER63A DNA MER1_type 1 83 -1605 2318 96 0 3 chr1 16696338 16696651 -265497013 + AluSx SINE Alu 1 312 0 536 231 36 107 chr1 16696651 16696797 -265496867 + MER63A DNA MER1_type 83 209 -1 353 278 41 0 chr1 16696799 16696896 -265496768 + MIR SINE MIR 83 183 -79 2035 125 0 28 chr1 16698520 16698702 -265494962 - AluSg SINE Alu 0 310 139 2327 52 42 0 chr1 16698702 16698991 -265494673 - AluY SINE Alu -10 301 1 2035 125 0 28 chr1 16698991 16699127 -265494537 - AluSg SINE Alu -171 139 1 1869 131 6 51 chr1 16699128 16699305 -265494359 - AluJb SINE Alu -12 300 142 2286 83 0 0 chr1 16699305 16699593 -265494071 - AluY SINE Alu -19 292 5 1869 131 6 51 chr1 16699593 16699729 -265493935 - AluJb SINE Alu -170 142 1 469 251 15 70 chr1 16699916 16700130 -265493534 + MIR SINE MIR 35 234 -28 2173 95 17 0 chr1 16700177 16700471 -265493193 + AluSx SINE Alu 3 301 -11 1169 63 25 13 chr1 16700471 16700629 -265493035 + L1PA7 LINE L1 5991 6150 -4 258 105 0 0 chr1 16701152 16701190 -265492474 + (ATG)n Simple_repeat Simple_repeat 2 39 0 485 312 71 18 chr1 16701248 16701418 -265492246 + MIR SINE MIR 21 199 -63 1855 149 10 0 chr1 16701420 16701731 -265491933 + AluSx SINE Alu 1 314 0 458 301 29 0 chr1 16701934 16702070 -265491594 - MIR SINE MIR -100 162 23 191 353 0 0 chr1 16702335 16702386 -265491278 - L3b LINE CR1 -95 1488 1438 391 297 125 10 chr1 16702593 16702785 -265490879 - MIR SINE MIR -2 260 47 328 336 18 0 chr1 16703248 16703358 -265490306 - MIR3 SINE MIR -87 121 10 417 335 54 12 chr1 16703969 16704136 -265489528 - MIR SINE MIR -14 248 75 2241 100 7 3 chr1 16705073 16705382 -265488282 - AluSq SINE Alu -3 310 1 192 296 0 0 chr1 16706054 16706098 -265487566 - L2 LINE L2 -89 3183 3140 411 277 0 11 chr1 16706644 16706738 -265486926 + MIR SINE MIR 72 164 -98 1712 174 10 16 chr1 16706932 16707236 -265486428 + AluJo SINE Alu 1 302 -10 399 259 6 82 chr1 16707443 16707601 -265486063 + MIR SINE MIR 111 256 -6 248 335 47 0 chr1 16707834 16707976 -265485688 + MIR SINE MIR 32 178 -63 2099 127 0 0 chr1 16708002 16708293 -265485371 + AluSx SINE Alu 1 291 -21 191 125 0 0 chr1 16708733 16708765 -265484899 - MIR3 SINE MIR -15 193 162 201 367 38 0 chr1 16708976 16709055 -265484609 - MIR3 SINE MIR -38 170 89 * 287 339 80 0 chr1 16709044 16709156 -265484508 + MIR SINE MIR 72 192 -70 189 103 0 0 chr1 16709274 16709303 -265484361 - L2 LINE L2 -224 3048 3020 1356 149 44 104 chr1 16709313 16709454 -265484210 + AluJo SINE Alu 1 149 -163 2045 91 0 11 chr1 16709454 16709728 -265483936 + AluSg SINE Alu 2 272 -38 1356 149 44 104 chr1 16709728 16709902 -265483762 + AluJo SINE Alu 149 297 -15 2267 102 0 6 chr1 16710812 16711126 -265482538 + AluSx SINE Alu 1 312 0 1030 136 0 57 chr1 16711126 16711302 -265482362 + AluSg/x SINE Alu 134 299 -13 228 310 0 0 chr1 16711628 16711686 -265481978 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 3227 73 7 0 chr1 16711874 16712327 -265481337 - HERVK9 LTR ERVK -5460 456 1 3973 92 0 4 chr1 16712327 16712840 -265480824 - MER9 LTR ERVK 0 511 1 254 102 0 0 chr1 16712846 16712895 -265480769 + L1MB7 LINE L1 6117 6165 -19 812 96 0 0 chr1 16712946 16713050 -265480614 + AluSq/x SINE Alu 1 104 -209 756 107 0 0 chr1 16713342 16713445 -265480219 - FRAM SINE Alu -14 162 60 515 177 0 0 chr1 16713495 16713574 -265480090 + AluJ/FLAM SINE Alu 16 94 -218 644 270 75 26 chr1 16714091 16714317 -265479347 + MIR SINE MIR 9 245 -17 701 268 63 58 chr1 16714354 16714701 -265478963 - L2 LINE L2 -86 3227 2879 468 232 20 73 chr1 16714716 16714867 -265478797 - MER20 DNA MER1_type -74 145 3 1435 133 165 16 chr1 16715367 16715622 -265478042 - AluJo SINE Alu -18 294 2 186 43 0 0 chr1 16715709 16715732 -265477932 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 213 223 0 0 chr1 16715942 16716036 -265477628 + (CA)n Simple_repeat Simple_repeat 1 94 0 226 278 196 0 chr1 16716418 16716515 -265477149 + MIR SINE MIR 25 140 -68 238 310 149 0 chr1 16717331 16717418 -265476246 + MIR SINE MIR 46 145 -63 278 253 105 11 chr1 16717518 16717613 -265476051 + MIR3 SINE MIR 52 155 -53 2044 104 31 0 chr1 16717675 16717962 -265475702 + AluSx SINE Alu 1 296 -16 1662 140 0 0 chr1 16717971 16718207 -265475457 + AluSx SINE Alu 1 236 -76 2221 78 0 0 chr1 16718248 16718554 -265475110 + AluSc SINE Alu 1 306 0 277 301 161 7 chr1 16719262 16719405 -265474259 - MIR SINE MIR -70 192 28 181 337 184 0 chr1 16719517 16719615 -265474049 + MIR SINE MIR 141 256 -6 464 326 96 21 chr1 16720544 16720964 -265472700 + L2 LINE L2 2746 3220 -52 248 274 186 0 chr1 16720979 16721092 -265472572 - L2 LINE L2 0 3313 3180 2179 84 14 3 chr1 16721214 16721510 -265472154 + AluSg SINE Alu 1 299 -11 749 252 87 22 chr1 16721758 16721865 -265471799 + MIR SINE MIR 15 114 -148 492 234 47 23 chr1 16721865 16721993 -265471671 + MER94 DNA DNA 1 131 -3 749 252 87 22 chr1 16721993 16722115 -265471549 + MIR SINE MIR 114 259 -3 234 0 0 0 chr1 16722137 16722163 -265471501 + (CA)n Simple_repeat Simple_repeat 1 26 0 1956 142 0 26 chr1 16722303 16722612 -265471052 - AluSq SINE Alu -12 301 1 238 331 39 15 chr1 16723259 16723389 -265470275 - MIR SINE MIR -59 149 17 396 235 92 8 chr1 16723471 16723590 -265470074 + MIR SINE MIR 64 192 -70 334 299 0 31 chr1 16723924 16724021 -265469643 - L2 LINE L2 0 3313 3220 426 280 82 104 chr1 16724621 16724900 -265468764 + L2 LINE L2 2973 3245 -27 613 290 12 0 chr1 16725070 16725239 -265468425 + MIR SINE MIR 90 260 -2 2263 189 36 61 chr1 16725274 16725547 -265468117 - L1MC3 LINE L1 -503 7282 7004 2037 148 0 3 chr1 16725547 16725850 -265467814 - AluSx SINE Alu -10 302 1 2263 189 36 61 chr1 16725850 16726220 -265467444 - L1MC3 LINE L1 -781 7004 6655 183 262 0 0 chr1 16726950 16726992 -265466672 + MIR SINE MIR 37 78 -130 306 295 152 10 chr1 16726996 16727302 -265466362 + L2 LINE L2 2716 3096 -176 414 353 35 6 chr1 16727379 16727421 -265466243 + MIR3 SINE MIR 11 50 -158 2393 86 0 0 chr1 16727421 16727725 -265465939 + AluSc SINE Alu 2 305 -4 414 353 35 6 chr1 16727725 16727855 -265465809 + MIR3 SINE MIR 50 188 -20 341 319 61 43 chr1 16727836 16727999 -265465665 + MIR SINE MIR 47 212 -50 * 28 0 0 0 chr1 16728421 16728449 -265465215 + AT_rich Low_complexity Low_complexity 1 28 0 271 271 0 41 chr1 16729359 16729481 -265464183 + G-rich Low_complexity Low_complexity 4 120 0 637 199 35 7 chr1 16729634 16729775 -265463889 - MIR SINE MIR -67 195 51 284 337 123 6 chr1 16730678 16730841 -265462823 + MER5A DNA MER1_type 8 189 0 297 233 68 0 chr1 16730919 16730992 -265462672 + L2 LINE L2 3195 3272 0 222 222 0 37 chr1 16731216 16731270 -265462394 - L2 LINE L2 0 3313 3262 305 219 61 12 chr1 16732209 16732291 -265461373 - MIR SINE MIR -161 101 16 207 269 75 0 chr1 16732925 16732992 -265460672 + MIR SINE MIR 68 139 -69 355 284 167 29 chr1 16733009 16733213 -265460451 + MIR SINE MIR 31 262 0 195 333 37 0 chr1 16733670 16733751 -265459913 + MIR SINE MIR 63 146 -116 556 270 153 5 chr1 16733874 16734063 -265459601 + MIR SINE MIR 17 233 -29 1949 151 0 0 chr1 16734660 16734958 -265458706 - AluJb SINE Alu -14 298 1 252 314 57 0 chr1 16735035 16735140 -265458524 + L2 LINE L2 2966 3076 -196 207 292 0 0 chr1 16735143 16735232 -265458432 + (CA)n Simple_repeat Simple_repeat 1 89 0 233 274 0 0 chr1 16735271 16735322 -265458342 + L2 LINE L2 3248 3298 -15 2241 103 0 0 chr1 16735326 16735626 -265458038 + AluSq SINE Alu 1 300 -13 204 347 6 40 chr1 16736513 16736686 -265456978 + G-rich Low_complexity Low_complexity 6 172 0 247 322 17 39 chr1 16736851 16737031 -265456633 + G-rich Low_complexity Low_complexity 3 178 0 207 237 88 105 chr1 16738323 16738437 -265455227 - MIR SINE MIR -33 229 118 383 309 49 0 chr1 16739337 16739460 -265454204 - MIR SINE MIR -118 144 16 1886 166 3 0 chr1 16739902 16740198 -265453466 - AluJo SINE Alu -15 297 1 288 0 0 0 chr1 16740332 16740364 -265453300 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2084 92 4 0 chr1 16740366 16740638 -265453026 + AluSp SINE Alu 1 273 -40 438 192 217 25 chr1 16740739 16740822 -265452842 - MIR SINE MIR -118 144 78 1290 125 58 31 chr1 16740822 16740938 -265452726 + MER30 DNA MER1_type 1 112 -118 2236 94 0 3 chr1 16740938 16741235 -265452429 + AluSg SINE Alu 1 296 -14 1290 125 58 31 chr1 16741235 16741342 -265452322 + MER30 DNA MER1_type 112 230 0 438 192 217 25 chr1 16741342 16741378 -265452286 - MIR SINE MIR -184 78 2 198 217 43 0 chr1 16742152 16742198 -265451466 + MIR SINE MIR 96 143 -65 198 333 73 0 chr1 16743047 16743143 -265450521 - L2 LINE L2 -9 3304 3202 418 287 129 34 chr1 16744019 16744228 -265449436 - MIR SINE MIR -21 241 13 2016 106 62 0 chr1 16744230 16744522 -265449142 - AluSx SINE Alu -2 310 1 825 123 0 15 chr1 16744524 16744654 -265449010 - AluJo/FLAM SINE Alu -174 128 1 283 356 19 0 chr1 16745850 16745954 -265447710 - L2 LINE L2 -9 3263 3158 719 204 4 0 chr1 16746093 16746344 -265447320 + (TGGA)n Simple_repeat Simple_repeat 1 252 0 403 259 6 6 chr1 16746326 16746488 -265447176 + (TGGG)n Simple_repeat Simple_repeat 1 162 0 * 735 182 11 6 chr1 16746468 16746644 -265447020 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 253 196 0 0 chr1 16746645 16746691 -265446973 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 869 168 6 0 chr1 16746699 16746878 -265446786 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr1 16747758 16747782 -265445882 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 289 293 113 0 chr1 16748280 16748386 -265445278 - MIR3 SINE MIR -26 182 65 411 217 21 19 chr1 16748441 16748567 -265445097 + MIR SINE MIR 101 226 -36 586 294 0 0 chr1 16749439 16749582 -265444082 + MIR SINE MIR 43 185 -77 209 303 15 0 chr1 16750498 16750564 -265443100 - MIR3 SINE MIR -53 155 89 213 239 0 22 chr1 16750986 16751032 -265442632 + MER5B DNA MER1_type 121 165 -13 386 297 0 42 chr1 16751046 16751164 -265442500 - MIR3 SINE MIR -53 155 43 1028 238 40 0 chr1 16751227 16751479 -265442185 - MIR SINE MIR 0 262 1 2003 116 3 20 chr1 16751494 16751797 -265441867 - AluJb SINE Alu -14 298 1 518 279 61 0 chr1 16752925 16753072 -265440592 + MIR SINE MIR 81 236 -26 318 288 72 16 chr1 16753395 16753520 -265440144 + L2 LINE L2 3133 3264 -8 332 266 35 9 chr1 16753620 16753733 -265439931 + MIR3 SINE MIR 87 202 -6 241 284 64 0 chr1 16753900 16754009 -265439655 - MIR SINE MIR -63 145 30 193 318 62 31 chr1 16754785 16754914 -265438750 - MIR3 SINE MIR -75 133 1 194 67 0 33 chr1 16757317 16757347 -265436317 + MIR SINE MIR 119 147 -61 2292 87 0 6 chr1 16758134 16758446 -265435218 + AluSq SINE Alu 1 310 -3 502 294 38 19 chr1 16760243 16760403 -265433261 - MIR SINE MIR -59 203 41 388 318 11 6 chr1 16761071 16761218 -265432446 + (TG)n Simple_repeat Simple_repeat 1 151 -29 2067 116 13 20 chr1 16761218 16761520 -265432144 + AluSx SINE Alu 1 300 -12 388 318 11 6 chr1 16761520 16761551 -265432113 + (TG)n Simple_repeat Simple_repeat 151 180 0 217 244 7 7 chr1 16761578 16761713 -265431951 + (TG)n Simple_repeat Simple_repeat 1 135 0 372 286 117 7 chr1 16761753 16761907 -265431757 + MIR SINE MIR 92 262 0 2162 103 27 0 chr1 16762232 16762524 -265431140 + AluSx SINE Alu 1 300 -12 250 246 15 46 chr1 16762524 16762579 -265431085 + L2 LINE L2 3217 3271 -1 1332 146 0 62 chr1 16763366 16763606 -265430058 + AluJb SINE Alu 88 312 0 459 304 15 7 chr1 16763611 16763746 -265429918 - MIR SINE MIR -5 257 122 2537 80 0 0 chr1 16764144 16764446 -265429218 - AluSg SINE Alu -8 302 1 2194 115 0 3 chr1 16764496 16764792 -265428872 - AluSx SINE Alu -17 295 1 1984 90 105 0 chr1 16764807 16765084 -265428580 - AluSc SINE Alu -1 308 3 509 272 114 5 chr1 16765101 16765285 -265428379 - MIR SINE MIR -6 256 53 267 214 0 0 chr1 16765457 16765513 -265428151 + L2 LINE L2 3257 3312 -1 275 333 0 26 chr1 16765584 16765701 -265427963 + MIR SINE MIR 146 259 -3 21 0 0 0 chr1 16766605 16766626 -265427038 + AT_rich Low_complexity Low_complexity 1 21 0 2267 112 3 10 chr1 16766635 16766949 -265426715 + AluSp SINE Alu 1 312 -1 2149 63 16 94 chr1 16767060 16767378 -265426286 + AluSq SINE Alu 1 293 -20 489 253 47 47 chr1 16767390 16767560 -265426104 + L2 LINE L2 2905 3074 -239 1406 86 6 0 chr1 16767566 16767740 -265425924 + AluSp SINE Alu 1 175 -138 628 0 49 0 chr1 16767746 16767828 -265425836 + (TAAAA)n Simple_repeat Simple_repeat 2 87 0 242 255 20 41 chr1 16767862 16767960 -265425704 + L2 LINE L2 3094 3189 -124 252 314 73 7 chr1 16768125 16768262 -265425402 + MIR SINE MIR 73 218 -44 597 273 82 10 chr1 16768424 16768618 -265425046 - MIR SINE MIR -48 214 7 282 261 171 57 chr1 16768786 16768962 -265424702 + MIR SINE MIR 67 262 0 218 156 22 0 chr1 16769069 16769114 -265424550 + GA-rich Low_complexity Low_complexity 1 46 0 225 0 0 0 chr1 16769427 16769452 -265424212 + (CA)n Simple_repeat Simple_repeat 1 25 0 1393 168 52 4 chr1 16769754 16770004 -265423660 + MER70A LTR ERVL 211 472 0 2123 134 6 22 chr1 16770176 16770350 -265423314 - AluSq SINE Alu -4 309 141 2275 74 36 36 chr1 16770350 16770659 -265423005 - AluSq SINE Alu -4 309 1 2123 134 6 22 chr1 16770659 16770798 -265422866 - AluSq SINE Alu -172 141 1 2435 80 0 3 chr1 16771191 16771492 -265422172 - AluY SINE Alu -7 304 5 1720 144 96 0 chr1 16771496 16771766 -265421898 - AluSx SINE Alu -16 296 1 802 324 96 7 chr1 16771829 16772234 -265421430 - L2 LINE L2 0 3313 2873 474 302 169 17 chr1 16772279 16772580 -265421084 - L2 LINE L2 -713 2601 2255 2254 114 0 3 chr1 16772582 16772888 -265420776 + AluSx SINE Alu 1 305 -7 27 0 0 0 chr1 16772920 16772947 -265420717 + AT_rich Low_complexity Low_complexity 1 27 0 1933 138 10 20 chr1 16773857 16774155 -265419509 + AluJb SINE Alu 1 295 -17 2436 88 7 0 chr1 16774613 16774918 -265418746 - AluSp SINE Alu -6 307 1 216 0 0 0 chr1 16774920 16774944 -265418720 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1872 122 48 0 chr1 16774944 16775214 -265418450 - AluSx SINE Alu -29 283 1 2582 52 0 16 chr1 16775216 16775555 -265418109 - AluY SINE Alu 0 311 1 2135 120 3 10 chr1 16775557 16775715 -265417949 - AluSc SINE Alu -19 290 133 2326 112 3 3 chr1 16775715 16776027 -265417637 - AluSq SINE Alu -1 312 1 2135 120 3 10 chr1 16776027 16776160 -265417504 - AluSc SINE Alu -176 133 1 1534 170 61 11 chr1 16776171 16776448 -265417216 - AluJo SINE Alu -21 291 1 439 228 48 66 chr1 16776633 16776737 -265416927 - L1MC3 LINE L1 -644 7141 7040 2127 117 0 3 chr1 16776737 16777019 -265416645 - AluSg SINE Alu -29 281 1 439 228 48 66 chr1 16777019 16777081 -265416583 - L1MC3 LINE L1 -745 7040 6978 180 0 0 0 chr1 16777081 16777101 -265416563 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1975 132 4 4 chr1 16777104 16777385 -265416279 - AluSx SINE Alu -31 281 1 482 186 102 17 chr1 16777505 16777623 -265416041 - AluJo SINE Alu -100 212 85 600 120 11 11 chr1 16777641 16777733 -265415931 - AluSq/x SINE Alu -177 135 44 946 220 6 0 chr1 16778607 16778780 -265414884 - AluJo SINE Alu -14 298 125 1365 106 0 6 chr1 16778799 16778979 -265414685 + AluSq SINE Alu 1 179 -134 2471 82 0 19 chr1 16779208 16779524 -265414140 + AluSg SINE Alu 1 310 0 226 203 34 0 chr1 16780611 16780670 -265412994 - L1ME3A LINE L1 -30 6140 6080 2171 121 7 0 chr1 16780696 16780993 -265412671 - AluSx SINE Alu -13 299 1 3076 164 94 38 chr1 16781116 16781849 -265411815 + L1MC3 LINE L1 6088 6861 -924 2253 119 13 0 chr1 16781875 16782178 -265411486 + AluSg SINE Alu 1 307 -3 1904 174 0 10 chr1 16782289 16782599 -265411065 + AluJo SINE Alu 1 307 -5 1870 155 17 10 chr1 16782620 16782917 -265410747 + AluJb SINE Alu 1 299 -13 2409 84 13 0 chr1 16783205 16783503 -265410161 - AluSg SINE Alu -8 302 1 192 273 0 0 chr1 16783767 16783811 -265409853 + L2 LINE L2 3216 3259 -13 863 181 29 23 chr1 16783881 16784052 -265409612 - AluJ SINE Alu -7 305 134 2124 132 37 0 chr1 16784083 16784378 -265409286 - AluSx SINE Alu -6 306 1 1826 154 0 38 chr1 16784403 16784722 -265408942 + AluJo SINE Alu 1 307 -5 2160 201 66 29 chr1 16784778 16785338 -265408326 + L1MC1 LINE L1 4264 4851 -1295 822 171 0 0 chr1 16785338 16785467 -265408197 - AluJ SINE Alu -173 129 1 2160 201 66 29 chr1 16785467 16785524 -265408140 + L1MC1 LINE L1 4851 4904 -1242 858 192 13 0 chr1 16785524 16785680 -265407984 + FAM SINE Alu 1 158 -17 1130 178 13 56 chr1 16785681 16785912 -265407752 - AluJb SINE Alu -7 305 85 2299 116 7 0 chr1 16785927 16786230 -265407434 - AluSx SINE Alu -7 305 1 2376 91 0 38 chr1 16786245 16786564 -265407100 - AluSc SINE Alu -2 307 1 534 284 95 0 chr1 16786579 16786801 -265406863 + L1MC1 LINE L1 4890 5132 -1014 1683 162 0 57 chr1 16786801 16786950 -265406714 + AluJb SINE Alu 1 126 -186 1895 130 9 68 chr1 16786950 16787101 -265406563 + AluSx SINE Alu 1 125 -187 2562 60 3 0 chr1 16787101 16787399 -265406265 + AluY SINE Alu 1 299 -12 1895 130 9 68 chr1 16787399 16787569 -265406095 + AluSx SINE Alu 125 303 -9 1683 162 0 57 chr1 16787569 16787716 -265405948 + AluJb SINE Alu 126 280 -32 776 168 9 106 chr1 16787726 16787900 -265405764 + L1MC1 LINE L1 5127 5276 -870 1104 121 181 107 chr1 16787900 16788181 -265405483 + AluSx SINE Alu 1 302 0 776 168 9 106 chr1 16788181 16788232 -265405432 + L1MC1 LINE L1 5276 5330 -816 974 117 97 0 chr1 16788233 16788378 -265405286 + AluY SINE Alu 136 294 -17 1865 159 19 35 chr1 16788388 16788691 -265404973 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16788691 16788730 -265404934 + (TA)n Simple_repeat Simple_repeat 1 39 0 5633 135 22 31 chr1 16788740 16789264 -265404400 + L1MC1 LINE L1 5323 5851 -482 1627 194 7 17 chr1 16789264 16789558 -265404106 + AluJb SINE Alu 1 291 -21 5633 135 22 31 chr1 16789558 16789975 -265403689 + L1MC1 LINE L1 5851 6256 -77 2107 145 0 0 chr1 16789975 16790279 -265403385 - AluSx SINE Alu -5 307 4 5633 135 22 31 chr1 16790279 16790355 -265403309 + L1MC1 LINE L1 6256 6331 -2 363 320 23 64 chr1 16790452 16790624 -265403040 + HAL1b LINE L1 1 3199 -1183 2142 91 15 0 chr1 16791163 16791437 -265402227 - AluSx SINE Alu -34 278 1 414 299 184 5 chr1 16791566 16791773 -265401891 + MIR SINE MIR 19 262 0 2171 82 0 0 chr1 16791827 16792095 -265401569 + AluY SINE Alu 38 305 -6 2363 109 6 0 chr1 16793076 16793387 -265400277 + AluSp SINE Alu 1 313 0 2548 171 28 2 chr1 16793394 16793851 -265399813 + L1MB2 LINE L1 5580 6048 -123 672 158 118 0 chr1 16793969 16794096 -265399568 - FLAM_C SINE Alu 0 143 2 * 684 143 17 17 chr1 16794096 16794205 -265399459 + AluJo SINE Alu 28 136 -176 1678 184 3 30 chr1 16794212 16794517 -265399147 + AluJb SINE Alu 13 309 -3 844 157 12 6 chr1 16794526 16794692 -265398972 + GA-rich Low_complexity Low_complexity 1 167 0 2591 74 0 0 chr1 16794709 16795020 -265398644 + AluY SINE Alu 1 311 0 3097 172 26 8 chr1 16795023 16795609 -265398055 + L1MD3 LINE L1 7395 7990 -5 2412 113 0 0 chr1 16795664 16795975 -265397689 + AluSx SINE Alu 1 311 -1 1873 147 33 16 chr1 16795995 16796302 -265397362 + AluJb SINE Alu 1 312 0 191 344 39 0 chr1 16796396 16796550 -265397114 - L3 LINE CR1 -235 1342 1183 763 307 144 30 chr1 16796626 16796976 -265396688 + MLT1K LTR MaLR 102 513 -75 2015 119 0 0 chr1 16796985 16797246 -265396418 + AluSq SINE Alu 1 261 -52 1308 197 128 75 chr1 16797246 16797714 -265395950 + MLT1D LTR MaLR 8 503 -2 763 307 144 30 chr1 16797714 16797800 -265395864 + MLT1K LTR MaLR 513 588 0 216 318 76 23 chr1 16798769 16798901 -265394763 - L3b LINE CR1 -101 1482 1344 563 195 64 92 chr1 16799521 16799925 -265393739 + L2 LINE L2 2694 3059 -254 680 209 95 31 chr1 16800024 16800244 -265393420 + MIR SINE MIR 11 245 -17 2250 122 0 3 chr1 16800319 16800613 -265393051 + AluSx SINE Alu 1 293 -19 1069 163 0 0 chr1 16800613 16800779 -265392885 + AluSg/x SINE Alu 135 300 -10 1847 162 7 34 chr1 16800790 16801087 -265392577 + AluJo SINE Alu 1 289 -23 411 237 79 9 chr1 16801296 16801410 -265392254 + MIR SINE MIR 34 155 -107 836 126 0 0 chr1 16802724 16802843 -265390821 - AluSg/x SINE Alu -1 309 191 290 282 91 9 chr1 16802921 16803031 -265390633 + L2 LINE L2 3182 3300 -13 343 306 124 41 chr1 16803440 16803852 -265389812 + L2 LINE L2 2826 3271 -1 932 116 0 0 chr1 16803895 16804024 -265389640 - FLAM_C SINE Alu -4 129 1 228 311 113 19 chr1 16804192 16804298 -265389366 + MIR SINE MIR 141 256 -6 224 293 0 30 chr1 16806384 16806483 -265387181 + C-rich Low_complexity Low_complexity 5 100 0 34 24 0 0 chr1 16806763 16806804 -265386860 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 16806944 16806966 -265386698 + GC_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 16807194 16807218 -265386446 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 303 273 8 61 chr1 16808251 16808383 -265385281 + MIR3 SINE MIR 15 139 -69 813 251 144 0 chr1 16809085 16809300 -265384364 - MIR SINE MIR -3 259 14 471 255 87 43 chr1 16810472 16810656 -265383008 - L2 LINE L2 -61 3211 3020 181 267 22 0 chr1 16810960 16811005 -265382659 + MIR SINE MIR 106 151 -111 393 205 16 118 chr1 16811750 16811877 -265381787 + MIR SINE MIR 30 143 -65 544 216 52 0 chr1 16813319 16813435 -265380229 - MIR SINE MIR -13 249 128 633 155 28 70 chr1 16813437 16813571 -265380093 + MER2 DNA MER2_type 1 130 -215 1892 146 3 7 chr1 16813571 16813919 -265379745 - AluSx SINE Alu 0 312 1 1653 161 0 21 chr1 16813966 16814251 -265379413 - AluJb SINE Alu -32 280 2 474 250 82 10 chr1 16814252 16814460 -265379204 + MER2 DNA MER2_type 122 344 -1 389 244 205 0 chr1 16814478 16814605 -265379059 - MIR SINE MIR -63 199 47 1021 83 8 0 chr1 16814608 16814741 -265378923 + AluSq/x SINE Alu 1 134 -179 2190 102 0 25 chr1 16814744 16815058 -265378606 + AluSg SINE Alu 3 308 -2 2295 57 3 0 chr1 16815278 16815603 -265378061 - AluSp SINE Alu 0 326 1 550 305 49 0 chr1 16816517 16816681 -265376983 - MIR SINE MIR -13 249 78 332 209 124 57 chr1 16816814 16816919 -265376745 - MIR SINE MIR -13 249 138 433 289 87 7 chr1 16818439 16818588 -265375076 - MIR SINE MIR -85 177 17 411 244 152 0 chr1 16818694 16818854 -265374810 - MIR SINE MIR -62 146 12 1178 93 0 0 chr1 16820384 16820534 -265373130 + AluSq/x SINE Alu 1 150 -163 216 341 33 0 chr1 16821178 16821269 -265372395 + (TGGA)n Simple_repeat Simple_repeat 1 94 0 234 339 0 0 chr1 16821342 16821404 -265372260 + (TGGG)n Simple_repeat Simple_repeat 4 65 0 525 188 20 0 chr1 16821435 16821584 -265372080 + (TGGA)n Simple_repeat Simple_repeat 2 153 0 212 100 25 0 chr1 16821625 16821665 -265371999 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 186 103 0 0 chr1 16821715 16821744 -265371920 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 206 152 0 22 chr1 16821789 16821835 -265371829 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 342 293 134 9 chr1 16821837 16822125 -265371539 - L2 LINE L2 0 3313 2933 2068 136 7 0 chr1 16822141 16822450 -265371214 - AluSx SINE Alu 0 312 2 965 131 0 0 chr1 16822451 16822588 -265371076 - AluSq/x SINE Alu -175 137 1 28 38 0 19 chr1 16822593 16822615 -265371049 + AT_rich Low_complexity Low_complexity 1 22 -30 1937 140 0 23 chr1 16822615 16822772 -265370892 - AluSx SINE Alu -19 293 134 378 0 0 0 chr1 16822772 16822814 -265370850 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1792 100 81 0 chr1 16822814 16823073 -265370591 - AluSc SINE Alu -29 280 1 1937 140 0 23 chr1 16823073 16823214 -265370450 - AluSx SINE Alu -176 136 1 28 38 0 19 chr1 16823214 16823244 -265370420 + AT_rich Low_complexity Low_complexity 22 52 0 1831 153 3 3 chr1 16823244 16823531 -265370133 - AluJo SINE Alu -23 289 3 209 333 16 0 chr1 16823533 16823596 -265370068 + MER91B DNA MER1_type 1 64 -126 295 183 174 17 chr1 16823605 16823720 -265369944 + LTR50 LTR ERVL 645 777 -18 951 264 134 57 chr1 16823786 16824076 -265369588 - L2 LINE L2 -4 3309 3043 2138 109 0 16 chr1 16824076 16824379 -265369285 + AluSx SINE Alu 1 298 -14 951 264 134 57 chr1 16824379 16824765 -265368899 - L2 LINE L2 -270 3043 2537 180 152 0 0 chr1 16824790 16824823 -265368841 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 2227 80 27 0 chr1 16827114 16827414 -265366250 - AluSx SINE Alu -4 308 1 309 275 50 42 chr1 16827571 16827691 -265365973 - MIR SINE MIR -14 248 128 485 250 107 18 chr1 16828532 16828700 -265364964 - MIR SINE MIR -1 261 79 2309 100 0 0 chr1 16828860 16829169 -265364495 - AluSx SINE Alu -1 311 3 918 145 180 30 chr1 16829171 16829371 -265364293 + AluJo SINE Alu 67 296 -16 460 260 0 0 chr1 16829380 16829476 -265364188 - MER45 DNA AcHobo -79 99 4 2020 128 13 3 chr1 16830906 16831210 -265362454 + AluSx SINE Alu 1 307 -5 802 280 85 19 chr1 16831236 16831611 -265362053 + MLT1J1 LTR MaLR 47 446 0 255 269 43 0 chr1 16832544 16832637 -265361027 - MIR3 SINE MIR -25 183 87 185 351 0 0 chr1 16832993 16833050 -265360614 - L2 LINE L2 -79 3193 3137 361 318 57 36 chr1 16833216 16833408 -265360256 - MIR SINE MIR -7 255 60 2141 132 110 27 chr1 16833658 16833976 -265359688 + MSTD LTR MaLR 1 354 -42 2098 108 7 13 chr1 16833976 16834281 -265359383 + AluSx SINE Alu 1 303 -9 2141 132 110 27 chr1 16834281 16834327 -265359337 + MSTD LTR MaLR 354 395 -1 841 146 0 22 chr1 16834392 16834529 -265359135 - FLAM_C SINE Alu -1 142 9 2263 65 31 0 chr1 16834589 16834882 -265358782 - AluSp SINE Alu -11 302 1 611 316 53 16 chr1 16835259 16835503 -265358161 - MIR SINE MIR 0 262 10 2212 94 20 0 chr1 16835534 16835833 -265357831 - AluSq SINE Alu -8 305 1 21 57 0 0 chr1 16835845 16835880 -265357784 + AT_rich Low_complexity Low_complexity 1 35 0 200 308 13 13 chr1 16836145 16836223 -265357441 + MIR SINE MIR 171 248 -14 205 295 16 0 chr1 16837280 16837341 -265356323 + MIR SINE MIR 108 169 -93 201 301 44 44 chr1 16837403 16837516 -265356148 - MIR3 SINE MIR -26 182 70 180 0 0 0 chr1 16837532 16837552 -265356112 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 258 179 125 0 chr1 16837570 16837626 -265356038 - L2 LINE L2 -60 3212 3150 369 228 106 90 chr1 16837862 16838033 -265355631 - MIR SINE MIR -33 229 49 1989 138 10 16 chr1 16838033 16838345 -265355319 + AluJb SINE Alu 1 310 -2 369 228 106 90 chr1 16838345 16838391 -265355273 - MIR SINE MIR -213 49 5 846 144 8 0 chr1 16838891 16839023 -265354641 + AluJb SINE Alu 1 133 -179 1977 94 8 0 chr1 16839026 16839293 -265354371 + AluSx SINE Alu 1 269 -43 2020 84 16 53 chr1 16839303 16839370 -265354294 + MER4A LTR ERV1 356 424 -240 2073 100 0 30 chr1 16839370 16839671 -265353993 - AluSc SINE Alu -17 292 1 2020 84 16 53 chr1 16839671 16839924 -265353740 + MER4A LTR ERV1 424 664 0 1199 173 88 22 chr1 16840015 16840287 -265353377 - MLT1B LTR MaLR 0 390 101 1623 164 3 33 chr1 16840287 16840455 -265353209 - AluJb SINE Alu -13 299 142 2324 89 0 10 chr1 16840455 16840769 -265352895 - AluSq SINE Alu 0 313 3 1623 164 3 33 chr1 16840769 16840904 -265352760 - AluJb SINE Alu -170 142 5 189 0 0 0 chr1 16840917 16840938 -265352726 + (T)n Simple_repeat Simple_repeat 1 21 0 525 133 95 48 chr1 16841327 16841432 -265352232 - MLT1B LTR MaLR -280 110 1 2341 90 0 0 chr1 16841688 16841987 -265351677 - AluSc SINE Alu -10 299 1 213 250 94 0 chr1 16842421 16842485 -265351179 + L2 LINE L2 1887 1956 -1358 190 294 43 33 chr1 16842480 16842572 -265351092 - L2 LINE L2 -854 2460 2368 * 1452 237 30 46 chr1 16843262 16843633 -265350031 + MLT1A1 LTR MaLR 1 365 0 257 343 57 0 chr1 16844505 16844645 -265349019 - MIR SINE MIR -92 170 23 236 310 65 58 chr1 16844650 16844805 -265348859 - L3 LINE CR1 -8 1569 1414 1970 136 10 0 chr1 16845177 16845472 -265348192 - AluSx SINE Alu -14 298 1 348 262 123 0 chr1 16845557 16845679 -265347985 - MIR SINE MIR -25 237 101 1675 157 17 11 chr1 16846072 16846359 -265347305 - AluJb SINE Alu -16 296 8 2207 95 7 0 chr1 16846366 16846660 -265347004 - AluSg SINE Alu -14 296 1 211 273 15 0 chr1 16847260 16847326 -265346338 + GA-rich Low_complexity Low_complexity 5 71 0 183 184 0 0 chr1 16849641 16849679 -265343985 + A-rich Low_complexity Low_complexity 1 38 0 206 32 32 0 chr1 16850327 16850358 -265343306 + (TA)n Simple_repeat Simple_repeat 1 32 0 258 243 68 68 chr1 16851688 16851791 -265341873 - L2 LINE L2 -2 3270 3168 206 359 77 6 chr1 16853796 16853952 -265339712 + MIR SINE MIR 77 243 -19 200 83 0 28 chr1 16854778 16854814 -265338850 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1937 128 14 0 chr1 16855196 16855477 -265338187 - AluSx SINE Alu -11 301 17 593 211 61 14 chr1 16856838 16856985 -265336679 + MIR SINE MIR 97 250 -12 2122 120 0 0 chr1 16857542 16857834 -265335830 - AluSx SINE Alu -15 297 6 1827 181 7 0 chr1 16858205 16858515 -265335149 - AluJo SINE Alu 0 312 1 1671 182 0 10 chr1 16858591 16858898 -265334766 - AluJo SINE Alu -8 304 1 2099 137 0 6 chr1 16859341 16859654 -265334010 + AluSx SINE Alu 2 312 0 463 242 0 0 chr1 16859781 16859876 -265333788 - MER3 DNA MER1_type -111 98 4 594 201 70 100 chr1 16860019 16860068 -265333596 - MIR SINE MIR -2 260 211 2171 107 3 3 chr1 16860068 16860367 -265333297 - AluSx SINE Alu -13 299 1 594 201 70 100 chr1 16860367 16860546 -265333118 - MIR SINE MIR -51 211 39 1572 176 0 35 chr1 16860547 16860860 -265332804 - AluJo SINE Alu -5 307 6 2102 85 3 29 chr1 16861563 16861870 -265331794 - AluY SINE Alu -12 299 1 203 161 0 0 chr1 16862030 16862061 -265331603 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 680 193 8 0 chr1 16862061 16862180 -265331484 - FLAM_A SINE Alu -13 120 1 1325 146 77 0 chr1 16862287 16862507 -265331157 + AluSx SINE Alu 5 241 -71 1650 144 0 43 chr1 16862559 16862858 -265330806 - AluJb SINE Alu -15 297 12 1824 78 78 8 chr1 16863039 16863307 -265330357 + AluY SINE Alu 1 287 -24 1840 93 4 7 chr1 16863342 16863611 -265330053 + AluSq SINE Alu 45 312 -1 221 0 0 33 chr1 16863615 16863645 -265330019 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2141 119 0 0 chr1 16863666 16863969 -265329695 - AluSq SINE Alu -10 303 1 2125 84 11 0 chr1 16864963 16865249 -265328415 - AluSp SINE Alu -24 289 1 338 285 46 15 chr1 16865314 16865444 -265328220 - MIR SINE MIR -4 258 125 456 201 22 36 chr1 16866028 16866167 -265327497 - LTR37B LTR ERV1 -2 466 330 409 176 0 15 chr1 16866197 16866265 -265327399 + FLAM_A SINE Alu 1 67 -75 1416 104 45 0 chr1 16868540 16868662 -265325002 + AluSp SINE Alu 1 137 -176 204 97 0 0 chr1 16868662 16868693 -265324971 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1416 104 45 0 chr1 16868693 16868772 -265324892 + AluSp SINE Alu 137 211 -102 1269 113 10 15 chr1 16868771 16868966 -265324698 - AluY SINE Alu -116 195 2 * 1627 154 61 11 chr1 16868966 16869245 -265324419 - AluSx SINE Alu -17 295 3 647 165 218 0 chr1 16869247 16869380 -265324284 - AluSg/x SINE Alu -16 296 135 2278 84 3 0 chr1 16869387 16869683 -265323981 - AluSp SINE Alu -16 297 1 1524 176 22 4 chr1 16869692 16870014 -265323650 - AluSx SINE Alu 0 327 1 1030 109 142 6 chr1 16870015 16870198 -265323466 - MSTC LTR MaLR -220 208 1 922 143 0 0 chr1 16870415 16870579 -265323085 + FLAM_C SINE Alu 1 164 0 369 0 0 0 chr1 16870610 16870651 -265323013 + (CA)n Simple_repeat Simple_repeat 2 42 0 634 256 184 40 chr1 16870662 16871079 -265322585 - L2 LINE L2 -19 3294 2791 480 48 0 0 chr1 16871098 16871161 -265322503 + (TG)n Simple_repeat Simple_repeat 2 64 0 2040 91 0 0 chr1 16871174 16871439 -265322225 - AluSq SINE Alu -48 265 1 198 321 35 22 chr1 16871445 16871562 -265322102 + L2 LINE L2 2825 2937 -335 2086 97 3 53 chr1 16871715 16872034 -265321630 + AluSx SINE Alu 1 303 -9 2277 73 3 0 chr1 16872127 16872415 -265321249 - AluSp SINE Alu -22 291 3 197 257 275 18 chr1 16872953 16873062 -265320602 - MIR SINE MIR -62 200 64 1567 223 43 80 chr1 16873339 16873457 -265320207 + L1ME3 LINE L1 5656 5777 -385 1911 135 7 7 chr1 16873457 16873753 -265319911 + AluJb SINE Alu 1 296 -16 1567 223 43 80 chr1 16873753 16873921 -265319743 + L1ME3 LINE L1 5777 5950 -212 1463 175 18 11 chr1 16873921 16874195 -265319469 + AluJo SINE Alu 36 311 -1 1567 223 43 80 chr1 16874195 16874423 -265319241 + L1ME3 LINE L1 5950 6152 -10 2137 103 3 3 chr1 16874447 16874748 -265318916 - AluSc SINE Alu -8 301 1 1552 193 0 22 chr1 16875197 16875513 -265318151 + AluJo SINE Alu 4 312 0 1335 126 192 12 chr1 16875585 16875840 -265317824 + AluSx SINE Alu 1 301 -11 2383 71 3 0 chr1 16875958 16876268 -265317396 + AluY SINE Alu 1 311 0 218 282 14 14 chr1 16876826 16876897 -265316767 + L3b LINE CR1 1174 1244 -339 22 0 0 0 chr1 16877270 16877292 -265316372 + AT_rich Low_complexity Low_complexity 1 22 0 2146 121 3 0 chr1 16877301 16877606 -265316058 + AluSx SINE Alu 1 306 -6 1859 147 0 3 chr1 16877617 16877910 -265315754 + AluJb SINE Alu 1 292 -20 2400 70 3 3 chr1 16877933 16878246 -265315418 + AluSp SINE Alu 1 313 0 2172 81 10 23 chr1 16878624 16878934 -265314730 - AluSp SINE Alu -7 306 1 706 177 39 8 chr1 16879181 16879311 -265314353 + FAM SINE Alu 40 173 -12 2180 153 36 122 chr1 16879605 16879702 -265313962 + L1MC3 LINE L1 7197 7301 -484 1983 137 0 3 chr1 16879702 16880001 -265313663 - AluSx SINE Alu -9 303 6 2180 153 36 122 chr1 16880001 16880347 -265313317 + L1MC3 LINE L1 7301 7634 -151 365 40 40 0 chr1 16880347 16880397 -265313267 + MADE1 DNA Mariner 29 80 0 2180 153 36 122 chr1 16880397 16880483 -265313181 + L1MC3 LINE L1 7634 7726 -59 822 168 13 0 chr1 16880505 16880660 -265313004 + AluJb SINE Alu 154 310 -2 625 254 30 119 chr1 16880672 16880816 -265312848 + MIR SINE MIR 1 112 -150 2288 82 3 3 chr1 16880816 16881120 -265312544 - AluSp SINE Alu -9 304 1 625 254 30 119 chr1 16881120 16881243 -265312421 + MIR SINE MIR 112 244 -18 969 182 6 0 chr1 16881317 16881498 -265312166 - AluSg/x SINE Alu -1 311 130 1793 97 11 128 chr1 16881507 16881858 -265311806 - AluSx SINE Alu -2 310 1 2354 90 0 0 chr1 16882074 16882384 -265311280 - AluSx SINE Alu -2 310 1 713 195 0 0 chr1 16882421 16882539 -265311125 + FLAM_C SINE Alu 1 118 -15 217 291 9 82 chr1 16882545 16882557 -265311107 - MER5A DNA MER1_type -50 139 128 2299 84 0 0 chr1 16882557 16882855 -265310809 + AluSx SINE Alu 1 298 -14 217 291 9 82 chr1 16882855 16882952 -265310712 - MER5A DNA MER1_type -61 128 38 226 350 26 51 chr1 16882989 16883106 -265310558 - MIR3 SINE MIR -48 160 47 2296 80 7 0 chr1 16883353 16883653 -265310011 - AluSg1 SINE Alu -7 302 1 3399 258 153 37 chr1 16884128 16884408 -265309256 + L2 LINE L2 1395 1641 -1672 1797 122 7 24 chr1 16884408 16884544 -265309120 + AluSg SINE Alu 1 138 -177 2179 100 3 7 chr1 16884544 16884854 -265308810 + AluSp SINE Alu 1 309 -4 1797 122 7 24 chr1 16884854 16885037 -265308627 + AluSg SINE Alu 138 315 0 3399 258 153 37 chr1 16885037 16885163 -265308501 + L2 LINE L2 1641 1751 -1562 2036 91 0 0 chr1 16885163 16885426 -265308238 - AluSg SINE Alu -43 267 5 3399 258 153 37 chr1 16885426 16885716 -265307948 + L2 LINE L2 1751 2006 -1307 1267 161 74 74 chr1 16885716 16886027 -265307637 - AluJo SINE Alu -1 311 1 3399 258 153 37 chr1 16886027 16886096 -265307568 + L2 LINE L2 2006 2066 -1247 1937 128 54 35 chr1 16886096 16886464 -265307200 - THE1C LTR MaLR 0 375 1 3399 258 153 37 chr1 16886464 16887401 -265306263 + L2 LINE L2 2066 3313 0 686 125 6 150 chr1 16887447 16887607 -265306057 - FLAM_C SINE Alu -5 138 2 741 120 103 0 chr1 16887661 16887778 -265305886 + AluSq/x SINE Alu 2 130 -183 1379 109 35 5 chr1 16887807 16888016 -265305648 + AluSq SINE Alu 87 288 -328 2127 94 27 0 chr1 16888016 16888313 -265305351 + AluSc SINE Alu 1 305 -4 1379 109 35 5 chr1 16888313 16888331 -265305333 + AluSq SINE Alu 288 616 0 212 353 52 29 chr1 16888398 16888534 -265305130 + L2 LINE L2 2376 2514 -800 1976 147 0 0 chr1 16888534 16888833 -265304831 + AluSx SINE Alu 1 299 -13 1259 195 10 53 chr1 16888980 16889283 -265304381 + AluJo SINE Alu 9 298 -14 187 26 0 79 chr1 16889525 16889563 -265304101 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1120 134 102 5 chr1 16889594 16889780 -265303884 + AluJo SINE Alu 86 289 -23 274 211 263 18 chr1 16889784 16889898 -265303766 + L2 LINE L2 3079 3220 -93 1432 179 53 68 chr1 16890108 16890268 -265303396 + MLT1A2 LTR MaLR 1 162 -212 2087 104 35 0 chr1 16890268 16890556 -265303108 + AluSx SINE Alu 1 298 -14 1432 179 53 68 chr1 16890556 16890775 -265302889 + MLT1A2 LTR MaLR 162 374 0 1773 165 7 3 chr1 16891229 16891538 -265302126 - AluSx SINE Alu 0 312 3 1865 142 3 3 chr1 16891542 16891830 -265301834 - AluJo SINE Alu -24 288 1 198 191 0 0 chr1 16892128 16892170 -265301494 + CT-rich Low_complexity Low_complexity 3 44 0 1226 163 117 32 chr1 16892172 16892455 -265301209 - AluJb SINE Alu -5 307 1 520 204 0 0 chr1 16892770 16892863 -265300801 + AluJ/FRAM SINE Alu 216 308 -4 1703 100 104 0 chr1 16893019 16893279 -265300385 - AluSx SINE Alu -25 287 1 189 0 0 0 chr1 16893285 16893306 -265300358 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 353 333 0 20 chr1 16893691 16893793 -265299871 - MIR SINE MIR -90 118 19 2327 90 0 7 chr1 16895241 16895551 -265298113 - AluSx SINE Alu -4 308 1 198 71 0 0 chr1 16896112 16896140 -265297524 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2465 71 0 0 chr1 16896228 16896538 -265297126 + AluSg SINE Alu 1 310 0 1920 130 3 20 chr1 16896801 16897102 -265296562 - AluSx SINE Alu -16 296 1 2252 72 0 20 chr1 16897438 16897744 -265295920 + AluY SINE Alu 1 300 -11 2162 97 3 3 chr1 16897802 16898102 -265295562 + AluSx SINE Alu 1 300 -12 2282 88 0 0 chr1 16898372 16898668 -265294996 - AluSx SINE Alu -16 296 1 2215 98 3 3 chr1 16898863 16899169 -265294495 - AluSg SINE Alu -4 306 1 2214 84 0 3 chr1 16899514 16899801 -265293863 - AluSc SINE Alu -23 286 1 2150 105 3 3 chr1 16900752 16901057 -265292607 - AluSx SINE Alu -7 305 1 1986 131 0 25 chr1 16901239 16901559 -265292105 + AluSx SINE Alu 1 312 0 26 30 0 0 chr1 16901655 16901688 -265291976 + AT_rich Low_complexity Low_complexity 1 33 0 372 175 0 0 chr1 16901691 16901748 -265291916 - AluJ/FLAM SINE Alu -202 100 44 228 313 36 36 chr1 16901759 16901871 -265291793 - MIR SINE MIR -56 206 95 537 210 36 58 chr1 16902120 16902175 -265291489 + AluJo SINE Alu 2 57 -255 1821 136 53 56 chr1 16902175 16902372 -265291292 - THE1C LTR MaLR 0 375 178 2185 98 0 0 chr1 16902372 16902668 -265290996 - AluSx SINE Alu -16 296 1 1821 136 53 56 chr1 16902668 16902845 -265290819 - THE1C LTR MaLR -197 178 2 537 210 36 58 chr1 16902845 16902927 -265290737 + AluJo SINE Alu 57 136 -176 365 259 46 0 chr1 16903151 16903259 -265290405 - MER20 DNA MER1_type 0 219 107 2185 87 0 42 chr1 16903427 16903602 -265290062 - AluSq SINE Alu -14 299 141 1484 89 9 36 chr1 16903602 16903827 -265289837 - AluY SINE Alu -10 301 83 2185 87 0 42 chr1 16903827 16903963 -265289701 - AluSq SINE Alu -172 141 1 2066 115 7 13 chr1 16903972 16904277 -265289387 - AluSq SINE Alu -10 303 1 2152 99 14 0 chr1 16904545 16904837 -265288827 + AluSx SINE Alu 1 296 -16 1743 169 0 10 chr1 16904961 16905262 -265288402 + AluJo SINE Alu 1 298 -14 1713 155 17 10 chr1 16905292 16905589 -265288075 + AluJb SINE Alu 1 299 -13 2252 84 13 0 chr1 16905877 16906175 -265287489 - AluSg SINE Alu -8 302 1 209 273 0 0 chr1 16906439 16906483 -265287181 + L2 LINE L2 3216 3259 -13 853 181 29 23 chr1 16906553 16906724 -265286940 - AluJ SINE Alu -7 305 134 1967 132 37 0 chr1 16906755 16907050 -265286614 - AluSx SINE Alu -6 306 1 1666 154 0 38 chr1 16907075 16907394 -265286270 + AluJo SINE Alu 1 307 -5 2259 197 66 29 chr1 16907450 16908010 -265285654 + L1MC1 LINE L1 4264 4851 -1295 852 155 0 16 chr1 16908010 16908139 -265285525 - AluJ SINE Alu -175 127 1 2259 197 66 29 chr1 16908139 16908196 -265285468 + L1MC1 LINE L1 4851 4904 -1242 896 192 13 0 chr1 16908196 16908352 -265285312 + FAM SINE Alu 1 158 -17 1017 178 13 56 chr1 16908353 16908584 -265285080 - AluJb SINE Alu -7 305 85 2133 116 7 0 chr1 16908599 16908901 -265284763 - AluSx SINE Alu -8 304 1 2218 91 0 38 chr1 16908916 16909235 -265284429 - AluSc SINE Alu -2 307 1 557 267 104 0 chr1 16909251 16909472 -265284192 + L1MC1 LINE L1 4889 5132 -1014 1532 162 0 57 chr1 16909472 16909621 -265284043 + AluJb SINE Alu 1 126 -186 1737 130 9 68 chr1 16909621 16909772 -265283892 + AluSx SINE Alu 1 125 -187 2406 60 3 0 chr1 16909772 16910070 -265283594 + AluY SINE Alu 1 299 -12 1737 130 9 68 chr1 16910070 16910240 -265283424 + AluSx SINE Alu 125 303 -9 1532 162 0 57 chr1 16910240 16910387 -265283277 + AluJb SINE Alu 126 280 -32 818 158 9 108 chr1 16910397 16910571 -265283093 + L1MC1 LINE L1 5127 5276 -870 1181 121 181 107 chr1 16910571 16910852 -265282812 + AluSx SINE Alu 1 302 0 818 158 9 108 chr1 16910852 16910899 -265282765 + L1MC1 LINE L1 5276 5326 -820 896 117 97 0 chr1 16910904 16911049 -265282615 + AluY SINE Alu 136 294 -17 1865 159 19 35 chr1 16911059 16911362 -265282302 + AluJo SINE Alu 1 300 -12 309 51 0 0 chr1 16911362 16911401 -265282263 + (TA)n Simple_repeat Simple_repeat 2 40 0 5633 135 22 31 chr1 16911411 16911935 -265281729 + L1MC1 LINE L1 5323 5851 -482 1627 194 7 17 chr1 16911935 16912229 -265281435 + AluJb SINE Alu 1 291 -21 5633 135 22 31 chr1 16912229 16912646 -265281018 + L1MC1 LINE L1 5851 6256 -77 2107 145 0 0 chr1 16912646 16912950 -265280714 - AluSx SINE Alu -5 307 4 5633 135 22 31 chr1 16912950 16913026 -265280638 + L1MC1 LINE L1 6256 6331 -2 363 320 23 64 chr1 16913123 16913295 -265280369 + HAL1b LINE L1 1 3199 -1183 2142 91 15 0 chr1 16913834 16914108 -265279556 - AluSx SINE Alu -34 278 1 414 299 184 5 chr1 16914237 16914444 -265279220 + MIR SINE MIR 19 262 0 2171 82 0 0 chr1 16914498 16914766 -265278898 + AluY SINE Alu 38 305 -6 2394 103 6 0 chr1 16915747 16916058 -265277606 + AluSp SINE Alu 1 313 0 1342 130 10 5 chr1 16916103 16916310 -265277354 + MER75 DNA T2_type 1 208 -306 1769 119 4 0 chr1 16916311 16916547 -265277117 + AluSx SINE Alu 1 237 -75 357 326 91 11 chr1 16916755 16916930 -265276734 - MIR3 SINE MIR -4 204 16 731 257 88 4 chr1 16916982 16917231 -265276433 + L1MC4a LINE L1 5742 6011 -1797 2275 108 0 25 chr1 16917312 16917627 -265276037 + AluSg SINE Alu 1 307 -3 2391 83 3 3 chr1 16917681 16917981 -265275683 + AluSp SINE Alu 1 300 -13 1688 176 10 20 chr1 16917987 16918107 -265275557 + AluJb SINE Alu 1 121 -191 2549 76 3 0 chr1 16918107 16918410 -265275254 + AluSp SINE Alu 1 304 -9 1688 176 10 20 chr1 16918410 16918591 -265275073 + AluJb SINE Alu 121 299 -13 1145 108 48 0 chr1 16918675 16918861 -265274803 + MSTB2 LTR MaLR 1 195 -262 245 206 32 16 chr1 16919077 16919140 -265274524 + MER5B DNA MER1_type 1 64 -114 547 238 8 0 chr1 16919179 16919301 -265274363 - FLAM_C SINE Alu -19 124 2 2062 133 0 0 chr1 16919314 16919600 -265274064 - AluSx SINE Alu 0 312 27 912 130 34 7 chr1 16919610 16919756 -265273908 - FRAM SINE Alu -2 174 25 264 143 0 0 chr1 16919760 16919802 -265273862 + FRAM/FAM SINE Alu 32 73 -102 2127 113 10 10 chr1 16919927 16920227 -265273437 - AluSx SINE Alu -12 300 1 2441 79 3 19 chr1 16920383 16920698 -265272966 - AluSp SINE Alu -3 310 1 1642 188 10 7 chr1 16920803 16921101 -265272563 - AluJo SINE Alu -13 299 1 2484 131 58 94 chr1 16921232 16921400 -265272264 - MER4B LTR ERV1 -36 574 402 2180 118 7 0 chr1 16921400 16921696 -265271968 + AluSx SINE Alu 1 298 -14 2013 93 0 73 chr1 16921696 16922043 -265271621 + AluSg SINE Alu 1 325 0 2484 131 58 94 chr1 16922043 16922156 -265271508 - MER4B LTR ERV1 -207 403 288 1847 166 0 7 chr1 16922156 16922452 -265271212 + AluJb SINE Alu 1 294 -18 2484 131 58 94 chr1 16922452 16922733 -265270931 - MER4B LTR ERV1 -322 288 29 1795 122 8 0 chr1 16922833 16923110 -265270554 + AluSx SINE Alu 35 313 0 1083 95 0 0 chr1 16923138 16923275 -265270389 + AluSq/x SINE Alu 1 137 -175 2353 90 3 16 chr1 16923276 16923588 -265270076 + AluY SINE Alu 4 311 0 2232 98 3 16 chr1 16923983 16924290 -265269374 + AluSg SINE Alu 2 304 -6 212 289 0 0 chr1 16924802 16924854 -265268810 + L2 LINE L2 3030 3081 -191 2207 105 17 3 chr1 16925144 16925439 -265268225 + AluSq SINE Alu 1 299 -14 1466 121 77 73 chr1 16926030 16926302 -265267362 + AluSx SINE Alu 1 273 -39 612 40 0 0 chr1 16926309 16926384 -265267280 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 24 32 0 0 chr1 16928077 16928108 -265265556 + GC_rich Low_complexity Low_complexity 1 31 0 398 216 74 19 chr1 16928477 16928593 -265265071 - MIR SINE MIR -62 146 59 1060 135 0 0 chr1 16928725 16928866 -265264798 + AluJb SINE Alu 136 276 -36 467 296 122 14 chr1 16929201 16929414 -265264250 + MLT1K LTR MaLR 306 541 -47 1075 81 0 0 chr1 16929423 16929559 -265264105 - AluSg/x SINE Alu 0 310 175 2268 100 0 7 chr1 16930148 16930447 -265263217 + AluSx SINE Alu 15 311 -1 1670 190 28 0 chr1 16930485 16930774 -265262890 + AluJb SINE Alu 5 301 -11 529 226 10 0 chr1 16930777 16930879 -265262785 - MER45 DNA AcHobo -937 103 1 1412 143 0 28 chr1 16931167 16931383 -265262281 + AluSx SINE Alu 2 211 -101 761 188 0 83 chr1 16931384 16931602 -265262062 + AluJo SINE Alu 78 277 -35 289 248 239 0 chr1 16931816 16931929 -265261735 + MIR SINE MIR 98 237 -25 1137 157 0 0 chr1 16932058 16932230 -265261434 - AluSg/x SINE Alu -4 306 135 1583 149 33 83 chr1 16932260 16932407 -265261257 + MLT1B LTR MaLR 32 185 -205 1651 198 10 7 chr1 16932407 16932710 -265260954 + AluJo SINE Alu 1 304 -8 1583 149 33 83 chr1 16932710 16932924 -265260740 + MLT1B LTR MaLR 185 375 -15 2269 92 0 0 chr1 16933387 16933702 -265259962 - AluSg SINE Alu 0 317 3 1973 164 0 3 chr1 16933715 16934013 -265259651 - AluJo SINE Alu -15 297 1 2423 87 10 0 chr1 16934537 16934836 -265258828 + AluSx SINE Alu 1 302 -10 2077 117 3 20 chr1 16936199 16936361 -265257303 - AluJb SINE Alu -19 293 137 2241 125 0 0 chr1 16936361 16936657 -265257007 - AluSx SINE Alu -16 296 1 2077 117 3 20 chr1 16936657 16936792 -265256872 - AluJb SINE Alu -175 137 1 216 256 11 67 chr1 16936836 16936926 -265256738 + L2 LINE L2 3167 3251 -62 825 257 237 40 chr1 16937020 16937138 -265256526 + L2 LINE L2 1573 1666 -1648 1703 167 11 14 chr1 16937138 16937420 -265256244 - AluJo SINE Alu -21 291 11 825 257 237 40 chr1 16937420 16937455 -265256209 + L2 LINE L2 1666 1693 -1621 2270 93 0 0 chr1 16937455 16937769 -265255895 + AluY SINE Alu 1 314 0 825 257 237 40 chr1 16937769 16938367 -265255297 + L2 LINE L2 1693 2475 -839 2270 124 0 0 chr1 16938411 16938709 -265254955 - AluSx SINE Alu -14 298 1 2014 110 26 4 chr1 16938729 16939028 -265254636 - AluSc SINE Alu 0 305 1 317 87 0 0 chr1 16939033 16939079 -265254585 - FLAM SINE Alu -6 127 82 2602 167 28 2 chr1 16939079 16939540 -265254124 - L1MB2 LINE L1 -119 6052 5580 2340 119 3 0 chr1 16939547 16939857 -265253807 - AluSp SINE Alu 0 313 3 661 125 0 0 chr1 16939957 16940069 -265253595 + AluSp/q SINE Alu 202 313 0 321 314 0 39 chr1 16940359 16940461 -265253203 + L2 LINE L2 3214 3311 -2 193 339 34 0 chr1 16940601 16940660 -265253004 - L2 LINE L2 -220 3052 2992 1823 156 0 4 chr1 16940732 16941007 -265252657 + AluJo SINE Alu 9 282 -30 346 339 36 18 chr1 16941027 16941192 -265252472 - MIR SINE MIR 0 262 95 501 187 98 8 chr1 16941217 16941340 -265252324 - MIR3 SINE MIR -60 148 15 378 251 192 30 chr1 16941901 16942005 -265251659 - MIR SINE MIR -14 248 162 2280 92 34 0 chr1 16942005 16942298 -265251366 + AluSq SINE Alu 3 305 -8 378 251 192 30 chr1 16942298 16942396 -265251268 - MIR SINE MIR -100 162 13 180 320 0 0 chr1 16942426 16942476 -265251188 - MIR SINE MIR -12 250 201 567 296 73 15 chr1 16942551 16942757 -265250907 - MIR SINE MIR -21 241 24 252 130 0 0 chr1 16944474 16944520 -265249144 + (CAGGG)n Simple_repeat Simple_repeat 3 48 0 2101 131 0 0 chr1 16947342 16947624 -265246040 - AluSx SINE Alu -6 306 25 202 277 51 90 chr1 16948027 16948204 -265245460 + L3 LINE CR1 1183 1352 -225 478 279 6 31 chr1 16948350 16948511 -265245153 - MIR SINE MIR -4 258 102 412 321 24 6 chr1 16950474 16950639 -265243025 - MIR3 SINE MIR -3 205 38 253 284 0 0 chr1 16951314 16951381 -265242283 + L2 LINE L2 2703 2769 -545 258 236 118 27 chr1 16951456 16951566 -265242098 + L2 LINE L2 2941 3060 -212 567 218 271 0 chr1 16952245 16952415 -265241249 + MER20 DNA MER1_type 3 218 -1 249 318 47 0 chr1 16952490 16952575 -265241089 - L1MEc LINE L1 -3382 2833 2745 2090 54 70 0 chr1 16952576 16952710 -265240954 + AluY SINE Alu 1 124 -187 1518 60 0 50 chr1 16952710 16952911 -265240753 + AluY SINE Alu 1 191 -120 2090 54 70 0 chr1 16952911 16953035 -265240629 + AluY SINE Alu 124 277 -34 1660 69 10 0 chr1 16953045 16953249 -265240415 + AluY SINE Alu 105 310 -1 580 130 4 5 chr1 16953383 16953645 -265240019 + AluSx SINE Alu 10 309 -3 423 277 194 29 chr1 16953646 16953916 -265239748 - L1MEc LINE L1 -3709 2519 2263 2032 101 50 22 chr1 16953916 16954194 -265239470 + AluSx SINE Alu 1 286 -26 423 277 194 29 chr1 16954194 16954218 -265239446 - L1MEc LINE L1 -3965 2263 2244 252 263 162 22 chr1 16955243 16955378 -265238286 - MIR SINE MIR -69 193 40 736 136 23 15 chr1 16957931 16958063 -265235601 - FLAM_C SINE Alu 0 133 1 248 125 6 194 chr1 16958334 16958405 -265235259 + Charlie5 DNA MER1_type 2456 2482 -142 2571 77 0 0 chr1 16958405 16958715 -265234949 + AluSg SINE Alu 1 310 0 248 125 6 194 chr1 16958715 16958803 -265234861 + Charlie5 DNA MER1_type 2482 2585 -39 1791 184 10 10 chr1 16958804 16959173 -265234491 + AluJo SINE Alu 1 369 0 1871 119 0 4 chr1 16959193 16959454 -265234210 + AluSx SINE Alu 37 296 -16 2220 111 7 3 chr1 16959533 16959830 -265233834 + AluSx SINE Alu 6 303 -9 2365 101 3 0 chr1 16959836 16960134 -265233530 + AluSx SINE Alu 1 299 -13 2306 100 3 10 chr1 16960490 16960800 -265232864 - AluSx SINE Alu -4 308 1 2723 148 58 0 chr1 16960855 16961403 -265232261 - L1MB4 LINE L1 -1 6179 5600 979 164 0 0 chr1 16961406 16961576 -265232088 - AluJb SINE Alu 0 306 137 481 198 121 0 chr1 16961578 16961694 -265231970 - L1MB4 LINE L1 -575 5605 5476 1898 149 0 49 chr1 16961698 16962026 -265231638 - AluJo SINE Alu 0 312 1 2308 106 7 0 chr1 16962037 16962330 -265231334 - AluSx SINE Alu -17 295 1 323 287 52 108 chr1 16962352 16962603 -265231061 - L2 LINE L2 -5 3267 3031 374 78 62 0 chr1 16963147 16963211 -265230453 + L1MB8 LINE L1 4674 4741 -1405 222 37 0 0 chr1 16963211 16963238 -265230426 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 619 116 0 130 chr1 16963238 16963292 -265230372 - L1PB1 LINE L1 -9 6142 6083 2163 118 0 37 chr1 16963292 16963615 -265230049 - AluSx SINE Alu 0 312 2 619 116 0 130 chr1 16963615 16963695 -265229969 - L1PB1 LINE L1 -68 6083 6026 2259 113 3 3 chr1 16963695 16963995 -265229669 - AluSx SINE Alu -12 300 1 1003 89 0 0 chr1 16964005 16964129 -265229535 - AluSg SINE Alu -186 124 1 706 191 64 5 chr1 16964129 16964317 -265229347 + L1MB8 LINE L1 5134 5332 -814 794 218 6 0 chr1 16964320 16964476 -265229188 + FRAM SINE Alu 1 157 -9 2143 131 0 0 chr1 16964482 16964773 -265228891 + AluSx SINE Alu 1 291 -21 1693 144 0 0 chr1 16965592 16965835 -265227829 + AluSx SINE Alu 50 292 -20 4594 159 9 31 chr1 16965835 16966008 -265227656 + L1MB8 LINE L1 5324 5499 -679 1777 179 4 0 chr1 16966008 16966309 -265227355 + AluJo SINE Alu 6 307 0 4594 159 9 31 chr1 16966309 16966565 -265227099 + L1MB8 LINE L1 5499 5759 -419 1900 156 9 40 chr1 16966565 16966886 -265226778 + AluJo SINE Alu 1 311 -1 4594 159 9 31 chr1 16966886 16967328 -265226336 + L1MB8 LINE L1 5759 6178 0 370 293 93 21 chr1 16968132 16968272 -265225392 + MIR SINE MIR 35 184 -78 2415 97 0 0 chr1 16968739 16969081 -265224583 + AluSx SINE Alu 1 342 0 435 245 9 0 chr1 16969253 16969359 -265224305 - MER103 DNA DNA -58 108 2 228 309 36 18 chr1 16969425 16969535 -265224129 + MIR SINE MIR 20 132 -76 1199 234 134 45 chr1 16970004 16970474 -265223190 - MLT1K LTR MaLR -4 584 73 1998 139 0 17 chr1 16970697 16971014 -265222650 - AluJb SINE Alu 0 313 2 643 119 28 0 chr1 16971017 16971126 -265222538 - AluSg/x SINE Alu -1 308 197 685 173 22 103 chr1 16971233 16971303 -265222361 - AluJo SINE Alu -139 173 99 1832 152 20 27 chr1 16971303 16971442 -265222222 + AluSx SINE Alu 1 139 -173 2270 100 3 10 chr1 16971442 16971743 -265221921 + AluSp SINE Alu 1 299 -14 1832 152 20 27 chr1 16971743 16971900 -265221764 + AluSx SINE Alu 139 295 -17 685 173 22 103 chr1 16971900 16972014 -265221650 - AluJo SINE Alu -213 99 4 272 322 185 0 chr1 16972067 16972213 -265221451 + L2 LINE L2 3103 3275 -38 1765 78 0 5 chr1 16972230 16972448 -265221216 + AluSg/x SINE Alu 84 300 -12 375 276 26 26 chr1 16972475 16972591 -265221073 - MIR SINE MIR -114 148 33 2224 68 57 0 chr1 16972806 16973086 -265220578 + AluY SINE Alu 1 296 -15 2110 115 35 0 chr1 16973182 16973470 -265220194 + AluSx SINE Alu 1 298 -14 2197 104 7 13 chr1 16973627 16973926 -265219738 + AluSx SINE Alu 7 303 -9 198 279 108 36 chr1 16974418 16974529 -265219135 - MIR SINE MIR -53 209 91 1824 129 79 7 chr1 16974619 16974897 -265218767 - AluSx SINE Alu -3 309 12 419 202 9 61 chr1 16975237 16975351 -265218313 + FLAM_A SINE Alu 1 108 -34 2371 103 0 0 chr1 16975384 16975685 -265217979 - AluSx SINE Alu -11 301 1 2054 121 14 3 chr1 16976596 16976893 -265216771 + AluSx SINE Alu 1 300 -12 2424 92 0 0 chr1 16977033 16977336 -265216328 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr1 16977368 16977395 -265216269 + AT_rich Low_complexity Low_complexity 1 27 0 1457 94 6 0 chr1 16977832 16978012 -265215652 - AluSp SINE Alu -131 182 2 231 295 40 96 chr1 16978018 16978393 -265215271 + L2 LINE L2 2699 3053 -219 2356 90 0 0 chr1 16978829 16979119 -265214545 - AluSx SINE Alu -21 291 2 198 103 0 0 chr1 16979172 16979201 -265214463 + (A)n Simple_repeat Simple_repeat 1 29 0 728 160 160 80 chr1 16979365 16979550 -265214114 + AluJo SINE Alu 85 289 -23 2641 68 0 0 chr1 16979550 16979861 -265213803 + AluY SINE Alu 1 311 0 728 160 160 80 chr1 16979861 16979875 -265213789 + AluJo SINE Alu 289 300 -12 187 137 20 20 chr1 16979876 16979927 -265213737 + G-rich Low_complexity Low_complexity 1 51 0 818 159 34 51 chr1 16979943 16980119 -265213545 + FRAM SINE Alu 1 164 -12 851 219 17 6 chr1 16980491 16980669 -265212995 + AluJo SINE Alu 116 295 -17 30 0 0 0 chr1 16980754 16980784 -265212880 + AT_rich Low_complexity Low_complexity 1 30 0 2266 125 0 3 chr1 16980784 16981095 -265212569 + AluSx SINE Alu 1 310 -2 402 234 73 16 chr1 16981145 16981282 -265212382 + MIR SINE MIR 4 146 -62 2299 115 7 0 chr1 16981432 16981737 -265211927 - AluSq SINE Alu -6 307 1 274 189 19 0 chr1 16982649 16982702 -265210962 + L2 LINE L2 3217 3270 -2 2480 78 0 0 chr1 16984750 16985046 -265208618 + AluSx SINE Alu 1 296 -16 2196 108 14 0 chr1 16985058 16985345 -265208319 + AluSp SINE Alu 1 291 -22 837 126 0 15 chr1 16985356 16985491 -265208173 + FLAM_C SINE Alu 1 133 0 515 266 75 17 chr1 16985491 16985664 -265208000 + MIR SINE MIR 79 261 -1 2209 110 4 0 chr1 16985752 16986065 -265207599 + AluSx SINE Alu 2 315 0 656 272 67 20 chr1 16986072 16986267 -265207397 + MIR SINE MIR 53 256 -6 195 235 145 19 chr1 16986750 16986843 -265206821 + MIR SINE MIR 10 107 -102 402 167 0 0 chr1 16986843 16986915 -265206749 - AluSx SINE Alu -8 302 231 1582 81 0 0 chr1 16986915 16987101 -265206563 - AluSx SINE Alu -126 186 1 202 298 0 0 chr1 16987109 16987166 -265206498 + MIR SINE MIR 132 188 -74 262 211 41 14 chr1 16988062 16988209 -265205455 + GA-rich Low_complexity Low_complexity 4 154 0 446 275 14 63 chr1 16988620 16988827 -265204837 + MIR SINE MIR 60 256 -6 2420 105 0 0 chr1 16988860 16989164 -265204500 + AluSp SINE Alu 2 305 -8 368 179 45 167 chr1 16989255 16989411 -265204253 + MIR SINE MIR 12 148 -114 1177 73 0 0 chr1 16989416 16989552 -265204112 + AluSq/x SINE Alu 1 136 -176 1558 82 0 0 chr1 16989552 16989736 -265203928 + AluSc SINE Alu 21 204 -105 1148 144 80 5 chr1 16989964 16989998 -265203666 + AluSg/x SINE Alu 83 113 -195 396 0 0 0 chr1 16989998 16990042 -265203622 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1148 144 80 5 chr1 16990042 16990219 -265203445 + AluSg/x SINE Alu 113 308 0 838 148 0 15 chr1 16990226 16990361 -265203303 + FLAM_C SINE Alu 1 133 0 844 194 0 7 chr1 16990461 16990616 -265203048 + LTR2B LTR ERV1 337 490 0 264 205 42 66 chr1 16990698 16990798 -265202866 - MIR SINE MIR -43 165 63 2220 129 7 0 chr1 16991071 16991374 -265202290 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr1 16991782 16991803 -265201861 + (A)n Simple_repeat Simple_repeat 1 21 0 627 227 74 51 chr1 16991850 16992029 -265201635 + MIR SINE MIR 42 228 -34 730 285 119 17 chr1 16992029 16992433 -265201231 + MLT1J1 LTR MaLR 1 445 -1 627 227 74 51 chr1 16992433 16992469 -265201195 + MIR SINE MIR 228 262 0 194 417 0 9 chr1 16992842 16992957 -265200707 - MIR SINE MIR -118 144 31 2347 95 0 0 chr1 16992960 16993282 -265200382 - AluSx SINE Alu 0 322 1 911 203 35 26 chr1 16993384 16993844 -265199820 + L1ME LINE L1 5129 5698 -466 2183 111 7 3 chr1 16993851 16994192 -265199472 + AluSp SINE Alu 1 313 0 690 172 16 0 chr1 16994195 16994323 -265199341 + AluJo/FLAM SINE Alu 1 130 -182 1141 78 26 0 chr1 16994323 16994476 -265199188 + BC200 scRNA scRNA 2 158 -42 233 261 0 14 chr1 16994651 16994720 -265198944 + MIR SINE MIR 59 126 -82 1828 140 49 0 chr1 16994950 16995235 -265198429 + AluSx SINE Alu 1 299 -13 290 269 0 0 chr1 16996018 16996085 -265197579 + L2 LINE L2 3247 3313 0 548 273 72 64 chr1 16996382 16996741 -265196923 + L1ME4a LINE L1 5526 5887 -234 2305 114 3 0 chr1 16996746 16997043 -265196621 + AluSq SINE Alu 1 298 -15 225 0 0 0 chr1 16997043 16997068 -265196596 + (TA)n Simple_repeat Simple_repeat 1 25 0 1986 160 0 0 chr1 16997068 16997374 -265196290 + AluJb SINE Alu 2 307 0 183 240 0 40 chr1 16997466 16997516 -265196148 + MIR SINE MIR 78 125 -137 817 160 8 0 chr1 16997578 16997703 -265195961 + FLAM_C SINE Alu 1 126 -17 824 130 8 8 chr1 16998189 16998312 -265195352 + FRAM SINE Alu 9 131 -45 2131 109 30 7 chr1 16998414 16998717 -265194947 + AluSq SINE Alu 1 310 -3 255 228 13 25 chr1 16998781 16998860 -265194804 + MER103 DNA DNA 2 79 -87 2117 177 35 17 chr1 16999022 16999424 -265194240 + MER70A LTR ERVL 64 472 0 2123 134 6 22 chr1 16999596 16999770 -265193894 - AluSq SINE Alu -4 309 141 2275 74 36 36 chr1 16999770 17000079 -265193585 - AluSq SINE Alu -4 309 1 2123 134 6 22 chr1 17000079 17000218 -265193446 - AluSq SINE Alu -172 141 1 2419 83 0 3 chr1 17000611 17000912 -265192752 - AluY SINE Alu -7 304 5 1720 144 96 0 chr1 17000916 17001186 -265192478 - AluSx SINE Alu -16 296 1 802 324 96 7 chr1 17001249 17001654 -265192010 - L2 LINE L2 0 3313 2873 911 276 213 25 chr1 17001699 17002002 -265191662 - L2 LINE L2 -713 2601 2356 2147 112 14 10 chr1 17002002 17002296 -265191368 + AluSx SINE Alu 1 295 -17 911 276 213 25 chr1 17002296 17002709 -265190955 - L2 LINE L2 -958 2356 1750 1021 144 69 0 chr1 17002722 17002882 -265190782 + AluJb SINE Alu 137 307 -5 274 277 305 20 chr1 17002911 17003406 -265190258 - L2 LINE L2 -1637 1677 1042 207 167 0 0 chr1 17003643 17003685 -265189979 + (CA)n Simple_repeat Simple_repeat 2 43 0 324 283 47 0 chr1 17004097 17004203 -265189461 - MIR SINE MIR -65 143 33 311 301 118 20 chr1 17004620 17004773 -265188891 - MIR SINE MIR -12 250 83 2021 148 3 7 chr1 17004853 17005151 -265188513 - AluJo SINE Alu -15 297 1 1838 153 27 17 chr1 17005224 17005518 -265188146 + AluSx SINE Alu 1 297 -15 1914 131 0 0 chr1 17005518 17005777 -265187887 + AluSx SINE Alu 44 303 -9 232 146 0 21 chr1 17005784 17005832 -265187832 + L1ME LINE L1 5772 5818 -348 1510 146 0 0 chr1 17006032 17006251 -265187413 + AluSg/x SINE Alu 82 300 -12 188 0 74 0 chr1 17006297 17006324 -265187340 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 505 184 0 29 chr1 17006324 17006418 -265187246 - AluJ SINE Alu -22 290 198 931 191 31 10 chr1 17006528 17006722 -265186942 - AluJ SINE Alu -114 198 1 432 116 14 0 chr1 17006871 17006940 -265186724 - MSTD LTR MaLR 0 396 327 450 0 0 0 chr1 17007434 17007484 -265186180 + (GA)n Simple_repeat Simple_repeat 1 50 0 2562 64 0 0 chr1 17007656 17007954 -265185710 - AluY SINE Alu -13 298 1 2185 118 0 10 chr1 17007958 17008262 -265185402 - AluSx SINE Alu -11 301 1 227 283 28 47 chr1 17008281 17008387 -265185277 - L2 LINE L2 -78 3235 3132 281 279 0 0 chr1 17008453 17008521 -265185143 - MIR SINE MIR -89 173 106 575 144 52 0 chr1 17008753 17008850 -265184814 + MER7A DNA MER2_type 1 100 -246 2094 98 3 60 chr1 17008857 17009023 -265184641 - AluSx SINE Alu -12 300 159 2268 125 0 3 chr1 17009023 17009382 -265184282 - AluSx SINE Alu 0 312 1 2094 98 3 60 chr1 17009382 17009533 -265184131 - AluSx SINE Alu -153 159 1 2348 86 27 0 chr1 17009543 17009844 -265183820 - AluY SINE Alu -2 309 1 1530 50 0 0 chr1 17009985 17009995 -265183669 + (C)n Simple_repeat Simple_repeat 1 190 0 1530 50 0 0 chr1 17009995 17010175 -265183489 + (C)n Simple_repeat Simple_repeat 1 180 0 225 239 9 28 chr1 17010590 17010699 -265182965 + A-rich Low_complexity Low_complexity 1 107 0 2251 95 7 0 chr1 17010797 17011092 -265182572 + AluSx SINE Alu 1 297 -15 2475 76 0 3 chr1 17011095 17011398 -265182266 + AluY SINE Alu 3 304 -7 289 294 64 18 chr1 17012238 17012347 -265181317 - MIR SINE MIR -91 171 58 204 250 0 0 chr1 17012348 17012396 -265181268 + (TAA)n Simple_repeat Simple_repeat 3 50 0 898 259 81 0 chr1 17012417 17012653 -265181011 - MIR SINE MIR 0 262 8 357 238 152 0 chr1 17012740 17012790 -265180874 - MIR SINE MIR -31 231 190 2129 108 0 0 chr1 17012790 17013086 -265180578 + AluSx SINE Alu 1 296 -16 357 238 152 0 chr1 17013086 17013140 -265180524 - MIR SINE MIR -72 190 111 275 253 0 24 chr1 17014319 17014402 -265179262 + (TCTCTG)n Simple_repeat Simple_repeat 3 83 0 435 205 82 16 chr1 17014910 17015032 -265178632 + MIR SINE MIR 16 145 -117 2024 88 29 0 chr1 17015034 17015358 -265178306 + AluSx SINE Alu 1 332 0 1402 147 4 0 chr1 17015670 17015908 -265177756 - AluSg/x SINE Alu -4 308 70 837 195 0 19 chr1 17016011 17016165 -265177499 - AluJo SINE Alu -160 152 2 228 163 0 0 chr1 17016372 17016415 -265177249 + T-rich Low_complexity Low_complexity 1 43 0 2223 107 0 0 chr1 17016449 17016758 -265176906 - AluSx SINE Alu -3 309 1 192 135 0 0 chr1 17016814 17016851 -265176813 + (CA)n Simple_repeat Simple_repeat 1 37 0 878 289 48 50 chr1 17016920 17016973 -265176691 - L1MC4a LINE L1 -1942 5866 5814 2223 49 0 14 chr1 17016973 17017282 -265176382 - AluY SINE Alu 0 305 1 878 289 48 50 chr1 17017282 17017666 -265175998 - L1MC4a LINE L1 -1994 5814 5429 740 144 22 65 chr1 17017668 17017807 -265175857 - FLAM_A SINE Alu 0 133 1 2027 132 0 3 chr1 17017816 17018126 -265175538 - AluSx SINE Alu -3 309 1 2138 114 7 0 chr1 17018630 17018937 -265174727 + AluSx SINE Alu 1 309 -3 324 234 0 39 chr1 17019005 17019082 -265174582 - MIR SINE MIR -57 151 78 424 246 109 28 chr1 17019401 17019612 -265174052 - MIR SINE MIR -7 255 28 289 240 13 0 chr1 17019713 17019788 -265173876 + MIR SINE MIR 46 121 -87 256 148 277 59 chr1 17020876 17020921 -265172743 - L1ME3A LINE L1 -11 6159 6125 1892 147 3 0 chr1 17020921 17021220 -265172444 + AluJb SINE Alu 3 302 -10 256 148 277 59 chr1 17021220 17021275 -265172389 - L1ME3A LINE L1 -45 6125 6037 689 236 150 24 chr1 17021275 17021702 -265171962 - L1ME LINE L1 -515 5655 5152 1717 153 16 13 chr1 17021702 17022010 -265171654 - AluJb SINE Alu -3 309 1 689 236 150 24 chr1 17022010 17022132 -265171532 - L1ME LINE L1 -1018 5152 5047 1759 159 7 10 chr1 17022145 17022454 -265171210 - AluJb SINE Alu -4 308 1 289 257 26 44 chr1 17022458 17022571 -265171093 - L1ME LINE L1 -1194 4952 4842 322 185 0 0 chr1 17022611 17022665 -265170999 + FLAM SINE Alu 78 131 -2 25 31 0 0 chr1 17022665 17022697 -265170967 + AT_rich Low_complexity Low_complexity 1 32 0 1690 174 10 0 chr1 17023108 17023402 -265170262 - AluJb SINE Alu -15 297 1 26 30 0 0 chr1 17023409 17023442 -265170222 + AT_rich Low_complexity Low_complexity 1 33 0 308 366 20 0 chr1 17023537 17023638 -265170026 + L2 LINE L2 3158 3260 -12 198 0 0 0 chr1 17023639 17023661 -265170003 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 436 204 62 35 chr1 17023731 17023844 -265169820 + MLT1I LTR MaLR 277 392 -17 888 152 28 28 chr1 17024079 17024257 -265169407 - AluJo SINE Alu -52 260 83 525 277 43 0 chr1 17024308 17024449 -265169215 + L2 LINE L2 2371 2517 -797 236 250 0 0 chr1 17024805 17024853 -265168811 + L2 LINE L2 3265 3312 -1 208 381 57 0 chr1 17025335 17025440 -265168224 - L2 LINE L2 -5 3308 3198 491 199 5 25 chr1 17025925 17026125 -265167539 + CT-rich Low_complexity Low_complexity 1 195 0 3148 193 27 6 chr1 17026555 17027331 -265166333 - L1MC2 LINE L1 -3 6341 5460 271 284 13 84 chr1 17027332 17027487 -265166177 - MLT1-int LTR MaLR -218 1153 1010 1499 205 58 11 chr1 17027596 17027957 -265165707 - L1ME2 LINE L1 -263 5901 5524 239 229 66 16 chr1 17028926 17028987 -265164677 - MIR3 SINE MIR -7 201 138 502 253 94 48 chr1 17029564 17029849 -265163815 + LTR33 LTR ERVL 9 275 -248 410 368 9 9 chr1 17029887 17030110 -265163554 + HERV16 LTR ERVL 1228 1450 -3546 639 280 45 20 chr1 17030296 17030496 -265163168 + HERV16 LTR ERVL 1799 2003 -3761 339 291 0 0 chr1 17030516 17030595 -265163069 + LTR16B LTR ERVL 1 79 -385 1934 229 61 62 chr1 17031279 17031904 -265161760 - MLT1E3 LTR MaLR 0 624 1 387 329 62 5 chr1 17032017 17032227 -265161437 + L1ME3 LINE L1 152 373 -6023 262 227 41 52 chr1 17032756 17032853 -265160811 + L1ME3 LINE L1 2713 2808 -3407 1334 281 25 41 chr1 17033035 17033644 -265160020 + L1ME3 LINE L1 3902 4500 -1715 312 83 0 0 chr1 17033664 17033712 -265159952 + (TG)n Simple_repeat Simple_repeat 2 49 0 210 71 0 0 chr1 17033838 17033866 -265159798 + (TA)n Simple_repeat Simple_repeat 1 28 0 552 230 19 6 chr1 17033870 17034031 -265159633 + L1ME3 LINE L1 5364 5526 -707 1160 118 0 6 chr1 17034064 17034234 -265159430 - AluSq SINE Alu -144 169 1 623 253 19 43 chr1 17034237 17034289 -265159375 + L1ME3 LINE L1 5980 6032 -199 2587 165 5 2 chr1 17034289 17034720 -265158944 + MSTB1 LTR MaLR 1 432 0 623 253 19 43 chr1 17034720 17034924 -265158740 + L1ME3 LINE L1 6032 6230 -1 312 309 81 13 chr1 17035214 17035363 -265158301 + MIR SINE MIR 31 189 -73 3638 213 34 12 chr1 17035998 17037078 -265156586 + L1MB7 LINE L1 5041 6158 -26 1854 162 10 0 chr1 17037182 17037491 -265156173 + AluJo SINE Alu 1 312 0 357 264 47 2 chr1 17037636 17037753 -265155911 + MIR SINE MIR 47 173 -35 273 309 96 7 chr1 17037762 17037898 -265155766 + MER5A DNA MER1_type 14 161 -28 212 364 83 0 chr1 17039255 17039376 -265154288 + MIR SINE MIR 118 248 -14 248 277 15 15 chr1 17039483 17039548 -265154116 + MIR SINE MIR 82 146 -62 1664 165 10 0 chr1 17041922 17042225 -265151439 + AluSg SINE Alu 1 306 -4 463 279 7 14 chr1 17042398 17042545 -265151119 + MIR SINE MIR 96 241 -21 348 200 42 42 chr1 17043546 17043641 -265150023 - L1MB5 LINE L1 -9 6165 6071 1694 160 0 0 chr1 17046737 17047012 -265146652 - AluSx SINE Alu 0 312 38 16142 84 5 46 chr1 17047726 17049113 -265144551 - L1P LINE L1 -2920 3226 1982 5458 45 9 0 chr1 17049113 17049765 -265143899 + L1PA4 LINE L1 5494 6151 -4 16142 84 5 46 chr1 17049765 17050830 -265142834 - L1P LINE L1 -4164 1982 875 369 0 0 0 chr1 17053046 17053087 -265140577 + (TG)n Simple_repeat Simple_repeat 2 42 0 221 167 19 0 chr1 17054589 17054643 -265139021 + CT-rich Low_complexity Low_complexity 1 55 0 281 157 36 12 chr1 17055715 17055798 -265137866 + GA-rich Low_complexity Low_complexity 2 86 0 270 73 0 0 chr1 17056204 17056245 -265137419 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 365 358 11 34 chr1 17057411 17057587 -265136077 + L1MC4 LINE L1 7460 7631 -411 532 314 45 48 chr1 17057598 17058040 -265135624 - L1MC4 LINE L1 -413 7629 7189 192 40 0 0 chr1 17058407 17058432 -265135232 + (TG)n Simple_repeat Simple_repeat 1 25 0 255 203 68 0 chr1 17059663 17059737 -265133927 - MLT2D LTR ERVL -70 445 367 514 313 21 10 chr1 17059762 17059954 -265133710 - MLT2D LTR ERVL -220 194 1 1059 267 26 8 chr1 17059957 17060346 -265133318 - L1M4 LINE L1 -892 5254 4859 1460 147 8 26 chr1 17060649 17060915 -265132749 + AluSq SINE Alu 50 310 -3 413 251 201 46 chr1 17060915 17061198 -265132466 + L1MEc LINE L1 983 1309 -5254 409 295 54 27 chr1 17061276 17061685 -265131979 + L1MEc LINE L1 1265 1683 -4701 * 1159 275 81 29 chr1 17061682 17061751 -265131913 + L1 LINE L1 4195 4259 -1887 308 94 19 0 chr1 17061751 17061804 -265131860 + (CA)n Simple_repeat Simple_repeat 2 55 0 1159 275 81 29 chr1 17061804 17062218 -265131446 + L1 LINE L1 4259 4703 -1443 1218 218 7 10 chr1 17062292 17062586 -265131078 - AluJo SINE Alu -6 306 14 33 66 0 0 chr1 17062658 17062719 -265130945 + AT_rich Low_complexity Low_complexity 1 61 0 1037 70 7 0 chr1 17062737 17062880 -265130784 + (CATATA)n Simple_repeat Simple_repeat 5 148 0 265 287 116 8 chr1 17063805 17063934 -265129730 + MIR SINE MIR 104 246 -16 333 337 62 14 chr1 17064007 17064295 -265129369 - L1ME LINE L1 -330 5791 5490 198 191 0 0 chr1 17064458 17064500 -265129164 + (TA)n Simple_repeat Simple_repeat 2 43 0 402 264 239 5 chr1 17064623 17064824 -265128840 - HAL1 LINE L1 -155 2352 2105 206 350 12 0 chr1 17066089 17066169 -265127495 + CT-rich Low_complexity Low_complexity 3 83 0 405 194 0 0 chr1 17067074 17067146 -265126518 - tRNA-Gln-CAG tRNA tRNA -3 72 1 192 195 172 58 chr1 17067734 17067821 -265125843 - L2 LINE L2 -7 3265 3169 530 285 180 10 chr1 17068593 17068793 -265124871 + MIR SINE MIR 3 236 -26 393 277 105 41 chr1 17069037 17069254 -265124410 + MIR SINE MIR 8 248 -14 494 31 16 0 chr1 17070151 17070215 -265123449 + (TATAG)n Simple_repeat Simple_repeat 5 69 0 671 232 126 50 chr1 17070222 17070371 -265123293 + MIR SINE MIR 33 202 -60 2209 109 0 0 chr1 17070371 17070675 -265122989 + AluSx SINE Alu 1 304 -8 671 232 126 50 chr1 17070675 17070723 -265122941 + MIR SINE MIR 202 245 -17 465 179 90 117 chr1 17070791 17070936 -265122728 - MLT1H1 LTR MaLR 0 555 404 180 0 0 0 chr1 17071239 17071259 -265122405 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2042 89 0 18 chr1 17071261 17071543 -265122121 - AluSg SINE Alu -33 277 1 399 240 0 0 chr1 17072867 17072942 -265120722 + tRNA-Val-GTG tRNA tRNA 1 75 -1 181 303 113 21 chr1 17073412 17073554 -265120110 - L2 LINE L2 -956 2358 2204 658 0 0 0 chr1 17074589 17074660 -265119004 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2203 103 7 0 chr1 17075336 17075638 -265118026 + AluSx SINE Alu 1 304 -8 337 203 14 14 chr1 17075889 17075958 -265117706 + tRNA-His-CAC tRNA tRNA 4 72 -3 651 135 0 0 chr1 17076411 17076507 -265117157 - AluSg/x SINE Alu -22 290 195 730 231 91 49 chr1 17076521 17076829 -265116835 - L1ME2 LINE L1 -13 6151 5831 322 299 163 0 chr1 17076915 17077062 -265116602 - L1ME2 LINE L1 -531 5631 5461 738 110 0 0 chr1 17077065 17077165 -265116499 + AluSc SINE Alu 80 179 -130 530 185 0 0 chr1 17077161 17077253 -265116411 + AluJb SINE Alu 210 301 -11 * 441 247 101 51 chr1 17077253 17077472 -265116192 - L1ME2 LINE L1 -703 5471 5264 8737 46 9 0 chr1 17077472 17079422 -265114242 - L1PA8 LINE L1 0 6172 4293 441 247 101 51 chr1 17079422 17079489 -265114175 - L1ME2 LINE L1 -910 5264 5202 4879 173 23 14 chr1 17079489 17080400 -265113264 - MER49 LTR ERV1 0 923 5 441 247 101 51 chr1 17080400 17080560 -265113104 - L1ME2 LINE L1 -972 5202 5000 734 276 128 38 chr1 17082085 17082592 -265111072 - L1M4 LINE L1 -899 5247 4695 2601 91 8 0 chr1 17082675 17083027 -265110637 + THE1A LTR MaLR 1 355 0 1152 179 24 32 chr1 17083204 17083450 -265110214 + MLT1A1 LTR MaLR 122 365 0 353 189 57 126 chr1 17084334 17084509 -265109155 + MER20 DNA MER1_type 1 163 -56 367 304 25 19 chr1 17084593 17084754 -265108910 - L2 LINE L2 -802 2512 2351 602 28 0 0 chr1 17085247 17085319 -265108345 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 645 183 73 0 chr1 17086377 17086514 -265107150 + U1 snRNA snRNA 5 151 -14 394 176 0 0 chr1 17087011 17087079 -265106585 - tRNA-His-CAC tRNA tRNA -2 73 6 1981 119 0 14 chr1 17087144 17087439 -265106225 - AluSx SINE Alu -21 291 1 556 81 0 0 chr1 17088126 17088200 -265105464 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 405 231 27 47 chr1 17088220 17088341 -265105323 + AluS SINE Alu 1 87 -216 543 231 169 72 chr1 17088559 17088711 -265104953 - L1MEc LINE L1 -4356 2040 1904 315 0 0 0 chr1 17088711 17088746 -265104918 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 543 231 169 72 chr1 17088746 17088772 -265104892 - L1MEc LINE L1 -4492 1904 1882 1800 150 3 0 chr1 17088772 17089058 -265104606 - AluSx SINE Alu -25 287 1 543 231 169 72 chr1 17089058 17089185 -265104479 - L1MEc LINE L1 -4514 1882 1704 1736 63 0 5 chr1 17089251 17089473 -265104191 + AluY SINE Alu 1 221 -90 2813 305 53 46 chr1 17089502 17089769 -265103895 + PRIMA41-int LTR ERV1 4072 4336 -3420 198 0 0 0 chr1 17089769 17089791 -265103873 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 2813 305 53 46 chr1 17089791 17090225 -265103439 + PRIMA41-int LTR ERV1 4336 4766 -2990 1997 130 3 7 chr1 17090225 17090533 -265103131 + AluSx SINE Alu 1 307 -5 2813 305 53 46 chr1 17090533 17091447 -265102217 + PRIMA41-int LTR ERV1 4766 5699 -2057 221 375 104 7 chr1 17092759 17092903 -265100761 - MIR3 SINE MIR -7 201 44 1781 110 50 30 chr1 17093093 17093394 -265100270 - AluSp SINE Alu -6 307 1 2244 82 0 31 chr1 17093539 17093856 -265099808 + AluY SINE Alu 1 307 -4 342 365 29 29 chr1 17094118 17094288 -265099376 + MER5B DNA MER1_type 7 176 -2 225 0 0 0 chr1 17094741 17094766 -265098898 + (A)n Simple_repeat Simple_repeat 1 25 0 231 380 54 5 chr1 17095015 17095199 -265098465 - L3 LINE CR1 -1319 258 66 1381 121 0 0 chr1 17095258 17095456 -265098208 - AluSg/x SINE Alu -1 309 112 4284 138 56 20 chr1 17095460 17096192 -265097472 - LTR49-int LTR ERV1 -5573 758 1 3219 146 29 22 chr1 17096194 17096785 -265096879 - LTR49 LTR ERV1 0 595 1 390 269 19 9 chr1 17096825 17096933 -265096731 + L2 LINE L2 2409 2517 -797 28 61 0 0 chr1 17098003 17098052 -265095612 + AT_rich Low_complexity Low_complexity 1 49 0 695 266 78 6 chr1 17098161 17098657 -265095007 + L1ME LINE L1 1561 2138 -4258 302 298 83 30 chr1 17098678 17098846 -265094818 + L1ME LINE L1 5694 5870 -320 670 13 0 0 chr1 17099939 17100014 -265093650 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1065 133 19 0 chr1 17100478 17100636 -265093028 + AluSg/x SINE Alu 132 292 -18 2553 206 12 25 chr1 17100868 17101221 -265092443 - MER72 LTR ERV1 -218 504 159 3915 102 47 22 chr1 17101221 17101699 -265091965 - MER51D LTR ERV1 -2 655 156 2324 85 0 3 chr1 17101699 17102005 -265091659 - AluSx SINE Alu -7 305 1 3915 102 47 22 chr1 17102005 17102165 -265091499 - MER51D LTR ERV1 -501 156 1 2553 206 12 25 chr1 17102165 17102322 -265091342 - MER72 LTR ERV1 -563 159 1 988 126 21 0 chr1 17102330 17102486 -265091178 - LTR49 LTR ERV1 -444 151 1 1017 168 20 39 chr1 17102494 17102540 -265091124 + MER89 LTR ERV1 359 404 -155 1861 117 7 11 chr1 17102540 17102865 -265090799 - AluY SINE Alu 0 324 1 1017 168 20 39 chr1 17102865 17103020 -265090644 + MER89 LTR ERV1 404 557 -2 654 191 94 63 chr1 17103038 17103355 -265090309 + MER31B LTR ERV1 1 445 -21 582 186 83 51 chr1 17103370 17103520 -265090144 + LTR8 LTR ERV1 2 156 -535 2011 153 9 18 chr1 17103520 17103860 -265089804 + MER1B DNA MER1_type 1 337 -2 2925 135 49 46 chr1 17103872 17104442 -265089222 + LTR8A LTR ERV1 156 727 0 3175 124 37 4 chr1 17104730 17105212 -265088452 - MER41E LTR ERV1 0 512 15 265 312 58 22 chr1 17105789 17105927 -265087737 + Charlie4 DNA MER1_type 1815 1957 -4 1535 0 0 0 chr1 17106312 17106476 -265087188 + U1 snRNA snRNA 1 164 -1 326 167 139 0 chr1 17106920 17106992 -265086672 - MER45B DNA AcHobo -647 393 312 479 220 80 13 chr1 17106993 17107143 -265086521 + REP3 LTR ERV 2 161 -401 1488 138 0 24 chr1 17107629 17107711 -265085953 + AluSx SINE Alu 59 141 -171 249 33 0 0 chr1 17107711 17107741 -265085923 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1488 138 0 24 chr1 17107741 17107905 -265085759 + AluSx SINE Alu 141 299 -13 324 48 0 0 chr1 17108077 17108119 -265085545 + (TC)n Simple_repeat Simple_repeat 1 42 0 26 50 0 0 chr1 17109163 17109203 -265084461 + AT_rich Low_complexity Low_complexity 1 40 0 677 221 263 8 chr1 17109203 17109443 -265084221 + AluJo SINE Alu 2 302 0 585 179 0 0 chr1 17109499 17109605 -265084059 + FLAM_A SINE Alu 18 123 -19 599 176 20 0 chr1 17109610 17109712 -265083952 + FRAM SINE Alu 40 143 -33 21 36 0 0 chr1 17109715 17109743 -265083921 + AT_rich Low_complexity Low_complexity 1 28 0 2009 126 0 0 chr1 17109764 17110057 -265083607 - AluSx SINE Alu -17 295 3 24 32 0 0 chr1 17110231 17110262 -265083402 + AT_rich Low_complexity Low_complexity 1 31 0 1988 121 4 0 chr1 17110290 17110601 -265083063 - AluSg SINE Alu 0 312 1 1854 98 58 15 chr1 17110670 17110944 -265082720 + AluSg SINE Alu 1 286 -24 40 0 0 0 chr1 17110945 17110985 -265082679 + AT_rich Low_complexity Low_complexity 1 40 0 2264 244 10 23 chr1 17111010 17111531 -265082133 + MER87 LTR ERV1 6 519 -22 404 200 118 0 chr1 17111520 17111605 -265082059 + AluSg/x SINE Alu 205 299 -1 * 1838 113 89 0 chr1 17112405 17112687 -265080977 + AluSx SINE Alu 1 307 -5 788 196 14 0 chr1 17112827 17112970 -265080694 + AluJb SINE Alu 140 311 0 244 0 0 0 chr1 17112970 17112997 -265080667 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1530 208 125 60 chr1 17113586 17114121 -265079543 + LTR4 LTR ERV1 27 596 0 253 91 0 0 chr1 17114121 17114154 -265079510 + U1 snRNA snRNA 133 165 0 216 0 0 0 chr1 17114182 17114206 -265079458 + (T)n Simple_repeat Simple_repeat 1 24 0 917 173 31 119 chr1 17114582 17114808 -265078856 - AluJb SINE Alu -106 206 1 1692 137 0 0 chr1 17115472 17115705 -265077959 + AluSx SINE Alu 1 233 -79 2234 88 0 14 chr1 17115732 17116049 -265077615 - AluY SINE Alu 0 313 1 195 42 0 0 chr1 17116301 17116325 -265077339 + (TG)n Simple_repeat Simple_repeat 1 24 0 584 197 0 0 chr1 17116333 17116450 -265077214 - FLAM_C SINE Alu -16 117 1 743 244 165 28 chr1 17116548 17117052 -265076612 + L1MEc LINE L1 1566 2138 -4258 294 102 41 7 chr1 17117077 17117135 -265076529 + Alu SINE Alu 245 293 -9 2030 131 0 7 chr1 17117147 17117445 -265076219 + AluSx SINE Alu 1 296 -16 1496 82 16 78 chr1 17117472 17117626 -265076038 + MER84 LTR ERVI 8 141 -366 2304 104 3 0 chr1 17117626 17117923 -265075741 - AluSg1 SINE Alu -11 298 1 1496 82 16 78 chr1 17117923 17118025 -265075639 + MER84 LTR ERVI 141 248 -259 2220 121 0 0 chr1 17118094 17118383 -265075281 + AluSq SINE Alu 11 299 -14 505 249 102 0 chr1 17118397 17118594 -265075070 - L1ME4a LINE L1 -188 5933 5717 401 257 18 0 chr1 17119201 17119310 -265074354 + MIR SINE MIR 72 182 -80 2186 94 34 14 chr1 17120098 17120232 -265073432 + AluSg SINE Alu 1 131 -179 2225 56 77 3 chr1 17120232 17120517 -265073147 + AluY SINE Alu 1 306 -5 2186 94 34 14 chr1 17120517 17120679 -265072985 + AluSg SINE Alu 131 303 -7 242 132 19 0 chr1 17121212 17121265 -265072399 + C-rich Low_complexity Low_complexity 5 58 0 206 306 83 0 chr1 17121835 17121907 -265071757 - MIR SINE MIR -74 188 111 1569 129 32 79 chr1 17122596 17122876 -265070788 + AluJo SINE Alu 30 296 -16 629 252 187 8 chr1 17122922 17123118 -265070546 - L2 LINE L2 -192 3080 2920 2322 110 0 25 chr1 17123118 17123436 -265070228 + AluSx SINE Alu 1 310 -2 629 252 187 8 chr1 17123436 17123646 -265070018 - L2 LINE L2 -352 2920 2605 1939 152 0 30 chr1 17123733 17124036 -265069628 - AluJb SINE Alu -18 294 1 2348 95 0 0 chr1 17124059 17124381 -265069283 + AluSx SINE Alu 1 322 0 194 343 127 38 chr1 17124384 17124597 -265069067 + MIR SINE MIR 31 262 0 627 227 74 51 chr1 17124872 17124908 -265068756 - MIR SINE MIR 0 262 228 730 285 119 17 chr1 17124908 17125312 -265068352 - MLT1J1 LTR MaLR -1 445 1 627 227 74 51 chr1 17125312 17125491 -265068173 - MIR SINE MIR -34 228 42 2220 129 7 0 chr1 17125965 17126268 -265067396 - AluSx SINE Alu -7 305 1 264 205 42 66 chr1 17126541 17126641 -265067023 + MIR SINE MIR 63 165 -43 855 187 0 7 chr1 17126723 17126878 -265066786 - LTR2B LTR ERV1 0 490 337 838 148 0 15 chr1 17126978 17127113 -265066551 - FLAM_C SINE Alu 0 133 1 1147 144 80 5 chr1 17127120 17127297 -265066367 - AluSg/x SINE Alu 0 308 113 432 0 0 0 chr1 17127297 17127345 -265066319 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1147 144 80 5 chr1 17127345 17127379 -265066285 - AluSg/x SINE Alu -195 113 83 1558 82 0 0 chr1 17127607 17127791 -265065873 - AluSc SINE Alu -105 204 21 1177 73 0 0 chr1 17127791 17127927 -265065737 - AluSq/x SINE Alu -176 136 1 368 179 45 167 chr1 17127932 17128088 -265065576 - MIR SINE MIR -114 148 12 2404 106 0 0 chr1 17128179 17128481 -265065183 - AluSp SINE Alu -10 303 2 446 275 14 63 chr1 17128514 17128721 -265064943 - MIR SINE MIR -6 256 60 262 211 41 14 chr1 17129132 17129279 -265064385 + CT-rich Low_complexity Low_complexity 4 154 0 202 298 0 0 chr1 17130174 17130231 -265063433 - MIR SINE MIR -74 188 132 1597 75 0 0 chr1 17130239 17130425 -265063239 + AluSx SINE Alu 1 186 -126 402 167 0 0 chr1 17130425 17130497 -265063167 + AluSx SINE Alu 230 301 -8 195 235 145 19 chr1 17130497 17130590 -265063074 - MIR SINE MIR -102 106 10 656 272 67 20 chr1 17131073 17131268 -265062396 - MIR SINE MIR -6 256 53 1746 116 31 12 chr1 17131275 17131565 -265062099 - AluSx SINE Alu 0 315 21 208 315 102 0 chr1 17131775 17131902 -265061762 - L2 LINE L2 -213 3059 2920 1301 174 9 0 chr1 17132131 17132344 -265061320 - AluJb SINE Alu -77 235 21 1020 213 126 92 chr1 17132376 17132457 -265061207 - L1MC5 LINE L1 -302 7659 7582 2109 115 0 4 chr1 17132457 17132736 -265060928 + AluSx SINE Alu 15 292 -20 1020 213 126 92 chr1 17132736 17132820 -265060844 - L1MC5 LINE L1 -379 7582 7502 1965 141 30 3 chr1 17132820 17133118 -265060546 - AluSx SINE Alu -6 306 1 1020 213 126 92 chr1 17133118 17133537 -265060127 - L1MC5 LINE L1 -459 7502 7054 2164 117 10 3 chr1 17133567 17133867 -265059797 - AluJb SINE Alu -10 302 1 1959 145 7 0 chr1 17134380 17134670 -265058994 + AluSx SINE Alu 14 305 -7 309 288 0 0 chr1 17134742 17134815 -265058849 - MIR SINE MIR -113 149 77 435 229 133 9 chr1 17135134 17135358 -265058306 - MIR SINE MIR -7 255 3 253 267 23 0 chr1 17135446 17135532 -265058132 + MIR SINE MIR 46 133 -75 1208 77 24 29 chr1 17137443 17137619 -265056045 - AluY SINE Alu 0 308 132 2179 116 3 3 chr1 17137619 17137920 -265055744 - AluSg1 SINE Alu -8 301 1 1208 77 24 29 chr1 17137920 17137938 -265055726 - AluY SINE Alu -176 132 115 282 56 0 0 chr1 17137942 17137978 -265055686 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 423 260 0 0 chr1 17137986 17138086 -265055578 - FRAM SINE Alu -29 137 38 827 179 0 8 chr1 17138264 17138398 -265055266 - AluJo SINE Alu -178 134 2 23 0 0 0 chr1 17138400 17138423 -265055241 + AT_rich Low_complexity Low_complexity 1 23 0 1431 142 0 21 chr1 17138463 17138687 -265054977 + AluSg/x SINE Alu 83 303 -7 2471 78 0 13 chr1 17138687 17138994 -265054670 + AluY SINE Alu 9 311 0 381 192 293 0 chr1 17139002 17139101 -265054563 - MER3 DNA MER1_type -80 129 2 832 165 0 0 chr1 17139132 17139265 -265054399 - FLAM_C SINE Alu 0 133 1 2069 153 3 0 chr1 17139272 17139572 -265054092 - AluJb SINE Alu -10 302 2 1765 97 108 8 chr1 17139606 17139865 -265053799 - AluSq SINE Alu -19 294 10 239 362 0 0 chr1 17140090 17140184 -265053480 - MIR SINE MIR -4 258 165 721 165 0 8 chr1 17140378 17140499 -265053165 - FLAM_C SINE Alu -23 120 1 29 0 0 0 chr1 17140500 17140529 -265053135 + AT_rich Low_complexity Low_complexity 1 29 0 979 127 0 8 chr1 17140575 17140709 -265052955 + AluSq/x SINE Alu 3 135 -178 2157 105 36 13 chr1 17140709 17141015 -265052649 + AluSp SINE Alu 1 313 0 2018 128 0 4 chr1 17141075 17141348 -265052316 + AluSx SINE Alu 33 304 -8 2227 78 53 0 chr1 17141350 17141633 -265052031 + AluY SINE Alu 2 299 -12 249 295 0 13 chr1 17142493 17142571 -265051093 - MIR SINE MIR -78 130 54 804 238 104 0 chr1 17142639 17142870 -265050794 - MIR SINE MIR 0 262 8 311 197 93 17 chr1 17142957 17143007 -265050657 - MIR SINE MIR -31 231 186 2432 87 0 0 chr1 17143007 17143305 -265050359 + AluSx SINE Alu 1 298 -14 311 197 93 17 chr1 17143305 17143370 -265050294 - MIR SINE MIR -76 186 104 270 242 0 0 chr1 17144273 17144335 -265049329 + (TCTCTG)n Simple_repeat Simple_repeat 4 65 0 411 219 73 16 chr1 17144851 17144974 -265048690 + MIR SINE MIR 16 145 -117 2177 91 29 0 chr1 17144976 17145304 -265048360 + AluSx SINE Alu 1 336 0 2016 125 35 0 chr1 17145597 17145907 -265047757 - AluSx SINE Alu 0 312 1 251 253 38 13 chr1 17145938 17146017 -265047647 - MIR SINE MIR -87 121 41 21 0 0 0 chr1 17146225 17146246 -265047418 + GC_rich Low_complexity Low_complexity 1 21 0 5966 225 62 25 chr1 17146521 17148649 -265045015 + L1MD1 LINE L1 871 3080 -3460 266 100 0 80 chr1 17148649 17148699 -265044965 + MLT1B LTR MaLR 1 46 -344 3055 187 28 75 chr1 17148701 17149445 -265044219 + L1MD1 LINE L1 5791 6489 -147 2327 95 0 0 chr1 17149445 17149757 -265043907 - AluY SINE Alu 0 312 1 3055 187 28 75 chr1 17149757 17149899 -265043765 + L1MD1 LINE L1 6489 6636 0 372 94 0 0 chr1 17150179 17150232 -265043432 + (CA)n Simple_repeat Simple_repeat 2 54 0 1140 223 36 13 chr1 17150232 17150563 -265043101 - MLT2B1 LTR ERVL -103 417 1 2553 199 68 24 chr1 17151072 17151705 -265041959 + MER67B LTR ERV1 1 661 0 381 252 75 63 chr1 17152082 17152336 -265041328 + L1ME3 LINE L1 5580 5836 -326 355 317 49 62 chr1 17153070 17153313 -265040351 + L1ME LINE L1 5541 5780 -341 1364 173 0 9 chr1 17153415 17153629 -265040035 - AluJo SINE Alu -100 212 1 367 79 51 64 chr1 17153684 17153768 -265039896 + FLAM_A SINE Alu 62 133 0 2013 147 3 0 chr1 17153887 17154172 -265039492 - AluSq SINE Alu -27 286 1 1164 139 0 0 chr1 17154172 17154338 -265039326 - AluSg/x SINE Alu -10 302 137 342 307 45 69 chr1 17154343 17154545 -265039119 - L1MC4a LINE L1 -1870 5938 5742 1316 227 142 15 chr1 17154562 17154972 -265038692 + MLT1C LTR MaLR 6 467 0 2025 108 29 4 chr1 17154981 17155260 -265038404 - AluSc SINE Alu -23 286 1 763 233 92 50 chr1 17155261 17155699 -265037965 + MLT1E LTR MaLR 4 542 -51 2420 109 0 0 chr1 17155699 17156011 -265037653 + AluSq SINE Alu 1 312 -1 321 26 0 0 chr1 17156042 17156080 -265037584 + (A)n Simple_repeat Simple_repeat 1 38 0 655 219 55 0 chr1 17156396 17156524 -265037140 + MIR SINE MIR 15 149 -113 630 192 34 48 chr1 17156533 17156679 -265036985 + MLT1A1 LTR MaLR 11 154 -211 1968 130 42 0 chr1 17156679 17156963 -265036701 + AluSq SINE Alu 1 296 -17 950 133 0 0 chr1 17156980 17157115 -265036549 + FLAM_C SINE Alu 9 143 0 936 156 167 0 chr1 17157115 17157301 -265036363 + MLT1A1 LTR MaLR 149 365 0 2104 124 10 3 chr1 17157311 17157609 -265036055 + AluSx SINE Alu 1 300 -12 271 236 55 73 chr1 17157609 17157719 -265035945 + MIR SINE MIR 155 262 0 1993 217 124 8 chr1 17157844 17158375 -265035289 - MLT1E LTR MaLR 0 593 1 2109 126 27 0 chr1 17158896 17159189 -265034475 - AluSx SINE Alu -11 301 1 1608 165 12 77 chr1 17159479 17159694 -265033970 - AluJo SINE Alu -6 306 118 2074 125 14 7 chr1 17159694 17159991 -265033673 + AluSx SINE Alu 1 299 -13 1608 165 12 77 chr1 17159991 17160102 -265033562 - AluJo SINE Alu -194 118 1 1949 128 54 10 chr1 17161982 17162278 -265031386 - AluJb SINE Alu -3 309 1 2976 95 62 28 chr1 17162290 17162587 -265031077 - MER75 DNA T2_type 0 514 192 1963 153 10 7 chr1 17162587 17162895 -265030769 + AluJb SINE Alu 1 309 -3 2976 95 62 28 chr1 17162895 17163094 -265030570 - MER75 DNA T2_type -322 192 1 2145 118 20 3 chr1 17163119 17163424 -265030240 - AluSq SINE Alu -3 310 1 926 209 0 22 chr1 17163431 17163596 -265030068 + MER58A DNA MER1_type 47 209 -2211 1223 187 117 11 chr1 17163596 17163869 -265029795 + AluSg1 SINE Alu 1 302 -7 926 209 0 22 chr1 17163869 17163885 -265029779 + MER58A DNA MER1_type 209 224 0 2395 100 0 3 chr1 17164273 17164583 -265029081 + AluSq SINE Alu 1 309 -4 380 279 162 13 chr1 17165606 17165760 -265027904 + MIR SINE MIR 79 255 -7 652 269 29 49 chr1 17165762 17165942 -265027722 - MIR SINE MIR 0 262 80 2247 109 3 3 chr1 17165942 17166236 -265027428 + AluSx SINE Alu 1 294 -18 2328 105 3 6 chr1 17166239 17166553 -265027111 + AluSp SINE Alu 1 313 0 652 269 29 49 chr1 17166553 17166613 -265027051 - MIR SINE MIR -184 78 23 261 250 169 27 chr1 17166628 17166776 -265026888 + L2 LINE L2 3123 3291 -22 2270 110 0 0 chr1 17166811 17167102 -265026562 + AluSg SINE Alu 1 291 -19 2322 107 3 10 chr1 17167189 17167498 -265026166 + AluSp SINE Alu 1 307 -6 33 0 0 0 chr1 17167806 17167839 -265025825 + GC_rich Low_complexity Low_complexity 1 33 0 302 296 177 0 chr1 17167993 17168179 -265025485 + L2 LINE L2 2835 3053 -219 2329 227 64 27 chr1 17168983 17169622 -265024042 + L1ME3A LINE L1 5408 6080 -90 2181 87 3 17 chr1 17169622 17169932 -265023732 - AluSp SINE Alu 0 306 1 2329 227 64 27 chr1 17169932 17170027 -265023637 + L1ME3A LINE L1 6080 6170 0 292 234 0 99 chr1 17170141 17170252 -265023412 + MIR SINE MIR 36 135 -73 266 77 58 0 chr1 17170298 17170350 -265023314 + A-rich Low_complexity Low_complexity 2 56 0 228 67 0 0 chr1 17170707 17170737 -265022927 + (CAGCC)n Simple_repeat Simple_repeat 1 30 0 374 250 198 96 chr1 17170987 17171311 -265022353 + L2 LINE L2 2914 3270 -2 198 240 53 40 chr1 17171628 17171703 -265021961 + MIR SINE MIR 20 95 -113 1205 161 54 93 chr1 17173456 17173519 -265020145 + AluJo SINE Alu 29 93 -219 2485 86 0 0 chr1 17173519 17173820 -265019844 - AluSx SINE Alu -11 301 1 1205 161 54 93 chr1 17173820 17174036 -265019628 + AluJo SINE Alu 93 297 -15 1731 159 32 14 chr1 17174036 17174313 -265019351 - AluJo SINE Alu -30 282 1 2339 99 3 3 chr1 17174370 17174672 -265018992 - AluSp SINE Alu -11 302 1 2106 146 7 0 chr1 17174672 17174974 -265018690 - AluSx SINE Alu -6 306 3 996 199 27 36 chr1 17175096 17175317 -265018347 + MER20 DNA MER1_type 1 219 0 2185 100 0 14 chr1 17175474 17175765 -265017899 + AluSg1 SINE Alu 1 287 -22 332 321 15 15 chr1 17175973 17176107 -265017557 - MIR SINE MIR -50 212 79 802 209 52 94 chr1 17177055 17177362 -265016302 - MER58B DNA MER1_type 0 341 48 1687 180 21 0 chr1 17177669 17177952 -265015712 - AluJb SINE Alu -23 289 1 2428 84 3 0 chr1 17178320 17178618 -265015046 + AluSp SINE Alu 1 299 -14 2185 93 0 0 chr1 17180454 17180724 -265012940 + AluSx SINE Alu 1 270 -42 1303 90 21 26 chr1 17181618 17181788 -265011876 - AluY SINE Alu -9 302 132 2169 105 3 10 chr1 17181788 17182084 -265011580 - AluSg1 SINE Alu -15 294 1 1303 90 21 26 chr1 17182084 17182102 -265011562 - AluY SINE Alu -179 132 115 303 28 0 0 chr1 17182106 17182142 -265011522 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 494 210 0 0 chr1 17182150 17182250 -265011414 - FRAM SINE Alu -39 137 38 866 156 0 7 chr1 17182422 17182557 -265011107 - AluJo SINE Alu -178 134 1 29 0 0 0 chr1 17182558 17182587 -265011077 + AT_rich Low_complexity Low_complexity 1 29 0 1580 121 0 14 chr1 17182620 17182843 -265010821 + AluSg/x SINE Alu 83 302 -8 2464 75 0 13 chr1 17182844 17183150 -265010514 + AluY SINE Alu 2 303 -8 374 192 293 0 chr1 17183150 17183249 -265010415 - MER3 DNA MER1_type -80 129 2 816 152 0 0 chr1 17183272 17183397 -265010267 - FLAM_C SINE Alu -8 125 1 1853 160 45 0 chr1 17183404 17183692 -265009972 - AluJb SINE Alu -10 302 2 248 362 0 0 chr1 17183909 17184003 -265009661 - MIR SINE MIR -4 258 165 430 206 0 0 chr1 17184882 17184955 -265008709 + tRNA-Val-GTG tRNA tRNA 1 73 -3 502 81 0 0 chr1 17186601 17186675 -265006989 + tRNA-Gly-GGG tRNA tRNA 1 74 0 2214 110 10 0 chr1 17187305 17187597 -265006067 + AluSx SINE Alu 1 295 -17 334 232 0 0 chr1 17187849 17187918 -265005746 + tRNA-His-CAC tRNA tRNA 4 72 -3 559 177 0 0 chr1 17188371 17188467 -265005197 - AluSg/x SINE Alu -22 287 192 289 200 165 0 chr1 17188495 17188580 -265005084 - L1ME3 LINE L1 -30 6132 6034 303 28 0 0 chr1 17189617 17189653 -265004011 + (CA)n Simple_repeat Simple_repeat 2 37 0 2110 128 0 0 chr1 17192323 17192628 -265001036 - AluSx SINE Alu 0 305 1 531 285 30 18 chr1 17193357 17193522 -265000142 + MIR SINE MIR 39 205 -57 472 265 54 54 chr1 17195097 17195263 -264998401 + MIR SINE MIR 20 185 -77 487 266 109 0 chr1 17195340 17195468 -264998196 - MER63 DNA MER1_type -68 768 1 29 0 0 0 chr1 17195929 17195958 -264997706 + AT_rich Low_complexity Low_complexity 1 29 0 1990 174 14 3 chr1 17196242 17196603 -264997061 - MLT1A1 LTR MaLR 0 365 1 282 197 118 26 chr1 17198284 17198360 -264995304 + MIR SINE MIR 81 163 -99 871 180 51 88 chr1 17198360 17198577 -264995087 + MER63A DNA MER1_type 1 209 -1 189 234 21 0 chr1 17198613 17198660 -264995004 + L2 LINE L2 3240 3287 -26 181 359 0 9 chr1 17200079 17200185 -264993479 - L2 LINE L2 -251 3021 2917 1829 172 0 25 chr1 17200343 17200663 -264993001 + AluJo SINE Alu 1 312 0 1953 149 10 0 chr1 17200902 17201190 -264992474 - AluSx SINE Alu -21 291 1 349 268 94 0 chr1 17201200 17201214 -264992450 - L1MA10 LINE L1 -2 6332 6319 1193 216 50 84 chr1 17201214 17201654 -264992010 - L1ME2 LINE L1 -8 6156 5732 207 69 0 0 chr1 17202657 17202686 -264990978 + (TG)n Simple_repeat Simple_repeat 1 29 0 2466 77 3 10 chr1 17204442 17204755 -264988909 + AluY SINE Alu 1 311 0 258 351 68 14 chr1 17205762 17205910 -264987754 - L2 LINE L2 -2 3270 3115 279 0 0 0 chr1 17206024 17206055 -264987609 + (TG)n Simple_repeat Simple_repeat 1 31 0 1083 184 128 3 chr1 17207252 17207540 -264986124 - MER33 DNA MER1_type 0 324 1 450 265 176 10 chr1 17208234 17208438 -264985226 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 17209312 17209343 -264984321 + (TCC)n Simple_repeat Simple_repeat 3 33 0 566 255 148 5 chr1 17211929 17212125 -264981539 + MIR SINE MIR 36 259 -3 606 304 114 31 chr1 17212170 17212969 -264980695 - L2 LINE L2 -177 3095 2216 443 294 70 35 chr1 17215049 17215250 -264978414 + L3 LINE CR1 1369 1576 -1 2156 107 55 0 chr1 17215258 17215549 -264978115 + AluSg SINE Alu 1 307 -3 270 228 269 48 chr1 17216335 17216480 -264977184 - MIR SINE MIR -3 259 83 2166 55 0 4 chr1 17216869 17217124 -264976540 - AluY SINE Alu -7 304 51 258 32 0 0 chr1 17217157 17217188 -264976476 + (TG)n Simple_repeat Simple_repeat 2 32 0 781 273 59 70 chr1 17217360 17217906 -264975758 - L1MEd LINE L1 -5141 978 439 305 293 79 6 chr1 17217947 17218111 -264975553 - L1MEd LINE L1 -5942 177 2 916 115 37 84 chr1 17219345 17219393 -264974271 - L1MB3 LINE L1 -3 6180 6131 2266 107 7 3 chr1 17219393 17219693 -264973971 - AluSp SINE Alu -12 301 1 916 115 37 84 chr1 17219693 17219835 -264973829 - L1MB3 LINE L1 -52 6131 5999 254 274 128 39 chr1 17220628 17220730 -264972934 + L2 LINE L2 3183 3293 -20 22 0 0 0 chr1 17220894 17220916 -264972748 + AT_rich Low_complexity Low_complexity 1 22 0 359 277 9 62 chr1 17221743 17221855 -264971809 - L2 LINE L2 -11 3261 3156 23 0 0 0 chr1 17222473 17222496 -264971168 + AT_rich Low_complexity Low_complexity 1 23 0 3509 46 16 2 chr1 17222496 17222929 -264970735 - L1PA5 LINE L1 0 6154 5716 2040 277 32 17 chr1 17222929 17223418 -264970246 - MER69 DNA AcHobo -1866 660 157 2314 117 3 0 chr1 17223418 17223718 -264969946 - AluSx SINE Alu -11 301 1 2040 277 32 17 chr1 17223718 17223878 -264969786 - MER69 DNA AcHobo -2369 157 1 2396 65 3 19 chr1 17225390 17225700 -264967964 - AluY SINE Alu -6 305 1 28 29 0 0 chr1 17226139 17226174 -264967490 + AT_rich Low_complexity Low_complexity 1 35 0 1492 266 148 43 chr1 17226266 17226844 -264966820 + L2 LINE L2 2282 2798 -515 2157 116 7 0 chr1 17226844 17227321 -264966343 - AluSq SINE Alu 0 484 6 1492 266 148 43 chr1 17227321 17227508 -264966156 + L2 LINE L2 2798 2964 -349 2267 102 0 13 chr1 17227508 17227823 -264965841 - AluY SINE Alu 0 311 1 1492 266 148 43 chr1 17227823 17227963 -264965701 + L2 LINE L2 2964 3308 -5 452 229 42 72 chr1 17227984 17228150 -264965514 + MIR SINE MIR 9 169 -93 207 208 42 0 chr1 17228128 17228176 -264965488 + L2 LINE L2 3216 3265 -7 * 258 365 10 0 chr1 17228771 17228875 -264964789 + L3 LINE CR1 1376 1480 -97 1611 163 39 14 chr1 17229134 17229417 -264964247 + AluJo SINE Alu 1 290 -22 231 114 0 0 chr1 17229422 17229457 -264964207 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 263 179 60 0 chr1 17229907 17229974 -264963690 + CT-rich Low_complexity Low_complexity 2 72 0 2491 82 0 0 chr1 17230074 17230378 -264963286 - AluSg SINE Alu -6 304 1 2321 103 0 0 chr1 17230870 17231162 -264962502 + AluSg SINE Alu 1 292 -18 223 209 23 0 chr1 17231602 17231645 -264962019 + L2 LINE L2 3224 3267 -5 180 331 86 36 chr1 17231962 17232101 -264961563 - L2 LINE L2 -2 3270 3125 276 304 137 25 chr1 17232432 17232593 -264961071 + MIR SINE MIR 77 255 -7 984 272 76 56 chr1 17233265 17233786 -264959878 + L2 LINE L2 2644 3153 -160 2359 86 0 3 chr1 17233786 17234076 -264959588 + AluSx SINE Alu 1 289 -23 192 111 0 0 chr1 17234079 17234115 -264959549 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 984 272 76 56 chr1 17234115 17234250 -264959414 + L2 LINE L2 3154 3310 -3 643 239 0 0 chr1 17234305 17234422 -264959242 - FRAM SINE Alu -43 133 17 525 294 95 12 chr1 17234465 17234696 -264958968 - MIR SINE MIR -12 250 3 677 303 117 26 chr1 17234902 17235321 -264958343 + L2 LINE L2 2624 3117 -196 1895 134 14 10 chr1 17235321 17235612 -264958052 - AluJo SINE Alu -20 292 1 677 303 117 26 chr1 17235612 17235806 -264957858 + L2 LINE L2 3117 3292 -21 195 224 20 41 chr1 17238911 17238960 -264954704 - MIR SINE MIR -73 135 88 300 294 0 0 chr1 17239444 17239512 -264954152 + MIR SINE MIR 36 103 -105 2234 80 28 0 chr1 17239708 17239994 -264953670 - AluSg SINE Alu -16 294 1 302 183 14 0 chr1 17243816 17243887 -264949777 + CT-rich Low_complexity Low_complexity 1 72 0 360 43 0 0 chr1 17244230 17244276 -264949388 + (CA)n Simple_repeat Simple_repeat 1 46 0 342 0 0 0 chr1 17249391 17249429 -264944235 + (CA)n Simple_repeat Simple_repeat 1 38 0 239 177 242 0 chr1 17251062 17251124 -264942540 + L2 LINE L2 3123 3199 -73 290 313 78 9 chr1 17251184 17251299 -264942365 + L2 LINE L2 3125 3247 -25 2269 116 0 10 chr1 17251414 17251725 -264941939 - AluSc SINE Alu -1 308 1 307 304 156 30 chr1 17251995 17252232 -264941432 + L2 LINE L2 2124 2390 -924 272 234 123 64 chr1 17252948 17253119 -264940545 + L3b LINE CR1 1202 1382 -201 197 0 71 0 chr1 17253151 17253179 -264940485 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 714 279 6 17 chr1 17254252 17254431 -264939233 + MER5B DNA MER1_type 2 178 0 2316 100 0 3 chr1 17255181 17255480 -264938184 - AluSg SINE Alu -12 298 1 1849 168 7 10 chr1 17255630 17255928 -264937736 + AluJo SINE Alu 1 297 -15 414 227 163 7 chr1 17255930 17256071 -264937593 - MIR SINE MIR 0 262 100 271 339 24 16 chr1 17256077 17256204 -264937460 - L2 LINE L2 -788 2526 2399 464 262 170 27 chr1 17258419 17258787 -264934877 + L2 LINE L2 2628 3069 -244 369 187 13 0 chr1 17258822 17258897 -264934767 - MLT1A1 LTR MaLR -1 364 289 213 39 0 0 chr1 17259024 17259050 -264934614 + (TG)n Simple_repeat Simple_repeat 2 27 0 605 273 118 30 chr1 17259229 17259371 -264934293 + MLT1J1 LTR MaLR 12 140 -306 2238 115 3 0 chr1 17259371 17259667 -264933997 + AluSq SINE Alu 1 297 -16 605 273 118 30 chr1 17259667 17259821 -264933843 + MLT1J1 LTR MaLR 140 334 -112 359 333 67 0 chr1 17260207 17260372 -264933292 + MER117 DNA MER1_type 4 179 -18 195 338 6 88 chr1 17260417 17260577 -264933087 - MER5A DNA MER1_type -26 163 17 303 266 0 0 chr1 17260655 17260734 -264932930 + MIR SINE MIR 135 213 -49 444 322 75 11 chr1 17262235 17262409 -264931255 + MIR SINE MIR 35 219 -43 215 311 29 29 chr1 17262949 17263052 -264930612 + L2 LINE L2 2951 3053 -219 186 43 0 0 chr1 17263063 17263086 -264930578 + (TC)n Simple_repeat Simple_repeat 2 24 0 196 200 0 0 chr1 17263217 17263252 -264930412 + L2 LINE L2 3271 3305 -8 298 287 75 78 chr1 17263422 17263899 -264929765 - LTR33 LTR ERVL -5 516 41 1375 193 56 3 chr1 17264319 17264581 -264929083 + AluJo SINE Alu 1 278 -34 286 250 40 0 chr1 17265754 17265854 -264927810 + L1ME4a LINE L1 6014 6117 -4 326 191 0 29 chr1 17265998 17266066 -264927598 + MIR SINE MIR 173 238 -24 201 204 45 0 chr1 17266033 17266077 -264927587 + L2 LINE L2 3210 3255 -17 * 1118 160 109 138 chr1 17266497 17266873 -264926791 - MLT1A1 LTR MaLR 0 365 1 614 265 38 11 chr1 17266904 17267089 -264926575 - MIR SINE MIR -36 226 37 754 181 0 43 chr1 17267261 17267399 -264926265 - FLAM_C SINE Alu -1 132 1 1584 168 6 44 chr1 17267401 17267717 -264925947 - AluJb SINE Alu -8 304 1 207 217 0 50 chr1 17268341 17268401 -264925263 - MIR SINE MIR -64 144 88 578 92 0 82 chr1 17271007 17271105 -264922559 + HY4 scRNA scRNA 1 90 -3 540 68 0 0 chr1 17271105 17271178 -264922486 + (GAA)n Simple_repeat Simple_repeat 1 73 0 631 197 73 0 chr1 17271866 17272003 -264921661 + U1 snRNA snRNA 5 151 -14 359 206 0 0 chr1 17272497 17272565 -264921099 - tRNA-His-CAC tRNA tRNA -2 73 6 25 0 0 0 chr1 17272613 17272638 -264921026 + AT_rich Low_complexity Low_complexity 1 25 0 1705 118 59 15 chr1 17272640 17272910 -264920754 - AluSx SINE Alu -30 282 1 589 68 0 0 chr1 17273599 17273673 -264919991 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 477 177 105 57 chr1 17273698 17273822 -264919842 + FLAM_C SINE Alu 2 131 -12 566 251 195 21 chr1 17274038 17274198 -264919466 - L1MEc LINE L1 -4356 2040 1909 1659 163 6 31 chr1 17274198 17274518 -264919146 - AluSx SINE Alu 0 312 1 566 251 195 21 chr1 17274518 17274644 -264919020 - L1MEc LINE L1 -4487 1909 1704 1646 91 0 0 chr1 17274712 17274933 -264918731 + AluY SINE Alu 1 221 -90 2736 305 51 54 chr1 17274933 17275679 -264917985 + PRIMA41-int LTR ERV1 4072 4819 -2937 1929 113 52 0 chr1 17275679 17275970 -264917694 + AluSx SINE Alu 1 306 -6 2736 305 51 54 chr1 17275970 17276886 -264916778 + PRIMA41-int LTR ERV1 4819 5700 -2056 1013 160 16 27 chr1 17277764 17277952 -264915712 + MER1B DNA MER1_type 152 337 -2 2872 140 49 46 chr1 17277964 17278534 -264915130 + LTR8A LTR ERV1 156 727 0 309 357 83 0 chr1 17278550 17278707 -264914957 - HAL1 LINE L1 -1811 696 527 3220 120 37 4 chr1 17278822 17279304 -264914360 - MER41E LTR ERV1 0 512 15 276 299 51 26 chr1 17279903 17280020 -264913644 + Charlie4 DNA MER1_type 1838 1957 -4 1535 0 0 0 chr1 17280404 17280568 -264913096 + U1 snRNA snRNA 1 164 -1 326 167 139 0 chr1 17281013 17281085 -264912579 - MER45B DNA AcHobo -647 393 312 479 220 80 13 chr1 17281086 17281236 -264912428 + REP3 LTR ERV 2 161 -401 1470 141 0 24 chr1 17281722 17281804 -264911860 + AluSx SINE Alu 59 141 -171 363 44 0 0 chr1 17281804 17281849 -264911815 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1470 141 0 24 chr1 17281849 17282014 -264911650 + AluSx SINE Alu 141 300 -12 339 25 0 0 chr1 17282186 17282226 -264911438 + (TC)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr1 17283282 17283310 -264910354 + AT_rich Low_complexity Low_complexity 1 28 0 611 188 339 80 chr1 17283310 17283549 -264910115 + AluJo SINE Alu 2 302 0 599 179 0 0 chr1 17283605 17283711 -264909953 + FLAM_A SINE Alu 18 123 -19 577 186 20 0 chr1 17283716 17283818 -264909846 + FRAM SINE Alu 40 143 -33 1978 133 0 0 chr1 17283870 17284163 -264909501 - AluSx SINE Alu -17 295 3 24 32 0 0 chr1 17284337 17284368 -264909296 + AT_rich Low_complexity Low_complexity 1 31 0 2007 118 4 0 chr1 17284398 17284707 -264908957 - AluSg SINE Alu 0 310 1 1662 98 0 29 chr1 17285477 17285723 -264907941 - AluSx SINE Alu -15 297 59 486 217 84 14 chr1 17286222 17286365 -264907299 - REP3 LTR ERV -408 154 2 305 203 78 0 chr1 17286366 17286430 -264907234 + MER45B DNA AcHobo 312 380 -660 1535 0 0 0 chr1 17286891 17287055 -264906609 - U1 snRNA snRNA -1 164 1 279 304 58 22 chr1 17287439 17287577 -264906087 - Charlie4 DNA MER1_type -4 1957 1815 3301 123 29 4 chr1 17288138 17288624 -264905040 + MER41E LTR ERV1 15 512 0 309 357 83 0 chr1 17288735 17288892 -264904772 + HAL1 LINE L1 527 696 -1811 2876 145 49 47 chr1 17288908 17289482 -264904182 - LTR8A LTR ERV1 0 727 153 2000 150 9 18 chr1 17289490 17289830 -264903834 - MER1B DNA MER1_type -2 337 1 588 184 41 54 chr1 17289833 17289980 -264903684 - LTR8 LTR ERV1 -545 146 2 620 178 17 17 chr1 17290117 17290235 -264903429 + LTR49 LTR ERV1 35 152 -443 2613 193 14 24 chr1 17290250 17290407 -264903257 + MER72 LTR ERV1 1 158 -564 4007 95 47 23 chr1 17290407 17290567 -264903097 + MER51D LTR ERV1 1 156 -501 2390 77 0 3 chr1 17290567 17290879 -264902785 + AluSx SINE Alu 1 311 -1 4007 95 47 23 chr1 17290879 17291358 -264902306 + MER51D LTR ERV1 156 655 -2 2613 193 14 24 chr1 17291358 17291709 -264901955 + MER72 LTR ERV1 158 504 -218 330 302 14 90 chr1 17291712 17291924 -264901740 + L1ME LINE L1 5544 5739 -431 1150 122 0 6 chr1 17291941 17292105 -264901559 - AluSg/x SINE Alu -16 294 132 675 13 0 0 chr1 17292570 17292645 -264901019 - tRNA-Asn-AAC tRNA tRNA -2 75 1 339 286 83 30 chr1 17293728 17293896 -264899768 - L1ME LINE L1 -320 5801 5625 527 204 30 0 chr1 17293917 17294049 -264899615 - L1MEc LINE L1 -4258 2138 2003 566 277 108 10 chr1 17294097 17294411 -264899253 - L1MEc LINE L1 -4491 1905 1561 28 61 0 0 chr1 17294520 17294569 -264899095 + AT_rich Low_complexity Low_complexity 1 49 0 416 250 19 9 chr1 17295612 17295720 -264897944 - L2 LINE L2 -797 2517 2409 3225 146 29 22 chr1 17295760 17296351 -264897313 + LTR49 LTR ERV1 1 595 0 5919 141 73 61 chr1 17296353 17297548 -264896116 + LTR49-int LTR ERV1 1 1209 -5122 301 306 14 0 chr1 17297548 17297620 -264896044 + tRNA-Glu-GAG tRNA tRNA 3 75 0 470 60 30 130 chr1 17297625 17297701 -264895963 + LTR49-int LTR ERV1 1288 1353 -4978 1863 165 0 0 chr1 17297701 17298004 -264895660 - AluSx SINE Alu -7 305 3 470 60 30 130 chr1 17298004 17298027 -264895637 + LTR49-int LTR ERV1 1353 1377 -4954 2269 126 46 118 chr1 17298029 17298323 -264895341 - L1M4c LINE L1 -4820 1564 1323 1944 121 4 0 chr1 17298323 17298603 -264895061 + AluSp SINE Alu 1 281 -32 2269 126 46 118 chr1 17298603 17298831 -264894833 - L1M4c LINE L1 -5061 1323 1080 1397 106 0 0 chr1 17299516 17299750 -264893914 + AluSg/x SINE Alu 95 328 0 220 393 43 5 chr1 17299807 17299993 -264893671 + L3 LINE CR1 66 258 -1319 342 0 0 0 chr1 17300242 17300280 -264893384 + (T)n Simple_repeat Simple_repeat 1 38 0 391 329 35 35 chr1 17300733 17300903 -264892761 - MER5B DNA MER1_type -2 176 7 2123 94 0 32 chr1 17301164 17301473 -264892191 - AluY SINE Alu -12 299 1 1800 109 48 48 chr1 17301618 17301931 -264891733 + AluSp SINE Alu 1 313 0 191 389 104 7 chr1 17302131 17302275 -264891389 + MIR3 SINE MIR 44 201 -7 1747 301 72 32 chr1 17303585 17304498 -264889166 - PRIMA41-int LTR ERV1 -2057 5699 4750 1773 127 11 7 chr1 17304499 17304783 -264888881 - AluSx SINE Alu -6 306 22 1789 164 72 40 chr1 17304883 17304929 -264888735 - L1MB3 LINE L1 -210 5973 5930 2320 70 3 3 chr1 17304929 17305227 -264888437 - AluY SINE Alu -13 298 1 1789 164 72 40 chr1 17305227 17305582 -264888082 - L1MB3 LINE L1 -253 5930 5559 1221 293 75 19 chr1 17305595 17306073 -264887591 + L2 LINE L2 2288 2792 -522 1102 199 116 157 chr1 17306073 17306416 -264887248 + MLT1A1 LTR MaLR 1 326 -70 1837 154 3 6 chr1 17306416 17306728 -264886936 - AluSx SINE Alu -1 311 1 1102 199 116 157 chr1 17306728 17306797 -264886867 + MLT1A1 LTR MaLR 326 396 0 598 301 125 28 chr1 17306852 17307204 -264886460 + L2 LINE L2 2888 3273 -40 403 223 97 0 chr1 17307600 17307703 -264885961 + MER81 DNA DNA 2 114 0 426 277 15 8 chr1 17308285 17308415 -264885249 + MER94 DNA DNA 2 132 -2 309 281 34 0 chr1 17309116 17309205 -264884459 + L2 LINE L2 3181 3272 0 337 278 80 53 chr1 17309294 17309481 -264884183 - MIR3 SINE MIR -8 200 9 260 267 85 80 chr1 17309830 17310006 -264883658 + MIR SINE MIR 77 253 -9 201 133 0 0 chr1 17310617 17310647 -264883017 - L2 LINE L2 -18 3295 3266 865 148 0 125 chr1 17310929 17311145 -264882519 + MER53 DNA DNA 1 189 0 183 42 0 0 chr1 17312868 17312892 -264880772 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 17313203 17313226 -264880438 + (TA)n Simple_repeat Simple_repeat 2 24 0 2447 30 0 7 chr1 17313240 17313540 -264880124 + AluY SINE Alu 1 298 -13 307 211 39 29 chr1 17314101 17314205 -264879459 - MLT1E2 LTR MaLR -200 305 201 493 233 0 92 chr1 17314457 17314620 -264879044 - MLT1E2 LTR MaLR -469 157 10 554 250 152 34 chr1 17314763 17314967 -264878697 - MIR SINE MIR -23 239 12 383 297 21 21 chr1 17316126 17316271 -264877393 + MIR SINE MIR 20 164 -98 628 205 23 136 chr1 17317592 17317624 -264876040 - MIR SINE MIR -18 244 210 1661 181 7 13 chr1 17317624 17317922 -264875742 + AluJo SINE Alu 1 296 -16 628 205 23 136 chr1 17317922 17318147 -264875517 - MIR SINE MIR -52 210 16 2759 206 34 15 chr1 17319606 17319833 -264873831 + LTR49 LTR ERV1 1 222 -373 2077 108 3 7 chr1 17319833 17320119 -264873545 + AluSx SINE Alu 23 307 -5 2759 206 34 15 chr1 17320119 17320475 -264873189 + LTR49 LTR ERV1 222 595 0 2838 29 0 0 chr1 17320888 17321202 -264872462 - AluYb8 SINE Alu -4 314 1 3267 118 14 27 chr1 17321288 17321806 -264871858 - MER9 LTR ERVK 0 511 1 1527 203 17 48 chr1 17322674 17323028 -264870636 - MLT1A1 LTR MaLR -2 363 21 268 280 83 32 chr1 17323196 17323568 -264870096 + L1ME3A LINE L1 4346 4736 -1410 698 244 24 28 chr1 17323596 17323809 -264869855 - MER20 DNA MER1_type -4 215 4 299 278 61 33 chr1 17323811 17324023 -264869641 + L1ME3A LINE L1 5653 5870 -300 246 197 66 26 chr1 17324757 17324833 -264868831 - MADE1 DNA Mariner 0 80 2 229 172 17 17 chr1 17325450 17325508 -264868156 + (TA)n Simple_repeat Simple_repeat 1 58 0 243 0 0 0 chr1 17325886 17325913 -264867751 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr1 17327240 17327265 -264866399 + AT_rich Low_complexity Low_complexity 1 25 0 184 218 40 97 chr1 17329877 17330001 -264863663 - MIR3 SINE MIR -6 202 86 187 279 81 54 chr1 17330489 17330600 -264863064 + L2 LINE L2 3145 3258 -14 180 297 40 0 chr1 17331085 17331159 -264862505 + MIR SINE MIR 185 261 -1 25 51 0 0 chr1 17331159 17331198 -264862466 + AT_rich Low_complexity Low_complexity 1 39 0 1297 245 58 65 chr1 17332814 17333672 -264859992 + L1ME1 LINE L1 3127 3978 -2168 1110 261 61 27 chr1 17333725 17334249 -264859415 + L1ME1 LINE L1 5394 5935 -231 542 295 35 10 chr1 17334539 17334739 -264858925 - MER63A DNA MER1_type -3 207 3 716 192 151 32 chr1 17335566 17335785 -264857879 - THE1C LTR MaLR -130 245 1 1246 236 13 3 chr1 17335785 17336086 -264857578 - L1 LINE L1 -2372 5193 4890 1662 128 0 12 chr1 17336090 17336340 -264857324 + THE1C LTR MaLR 129 375 0 1070 254 95 41 chr1 17336350 17337361 -264856303 - L1 LINE L1 -3552 4013 2932 9000 129 54 0 chr1 17337461 17338800 -264854864 + THE1C-int LTR MaLR 164 1574 -6 1233 167 41 37 chr1 17338805 17339051 -264854613 + THE1C LTR MaLR 1 247 -128 940 145 101 0 chr1 17339176 17339335 -264854329 - AluSg SINE Alu -130 180 6 2377 71 0 0 chr1 17339345 17339662 -264854002 - AluY SINE Alu 0 317 1 9528 85 12 7 chr1 17339667 17340918 -264852746 + HERVL LTR ERVL 119 1375 -4279 683 302 40 52 chr1 17341020 17341421 -264852243 - PRIMA41-int LTR ERV1 -3018 4738 4343 1762 68 5 5 chr1 17341751 17341972 -264851692 - AluY SINE Alu -90 221 1 413 228 157 117 chr1 17342036 17342162 -264851502 + L1MEc LINE L1 1704 1823 -4573 1826 158 7 0 chr1 17342162 17342447 -264851217 + AluSx SINE Alu 1 287 -25 413 228 157 117 chr1 17342447 17342644 -264851020 + L1MEc LINE L1 1823 2040 -4356 389 236 89 49 chr1 17342862 17342985 -264850679 - FLAM_C SINE Alu -5 128 1 573 68 0 0 chr1 17343005 17343079 -264850585 - tRNA-Asn-AAC tRNA tRNA -3 74 1 2099 122 0 14 chr1 17343766 17344061 -264849603 + AluSx SINE Alu 1 291 -21 390 176 0 0 chr1 17344126 17344194 -264849470 + tRNA-His-CAC tRNA tRNA 6 73 -2 638 187 72 0 chr1 17344693 17344832 -264848832 - U1 snRNA snRNA -14 151 3 566 56 0 0 chr1 17345887 17345959 -264847705 - tRNA-Glu-GAG tRNA tRNA -3 72 1 302 304 25 19 chr1 17346452 17346613 -264847051 + L2 LINE L2 2351 2512 -802 325 200 51 120 chr1 17346697 17346872 -264846792 - MER20 DNA MER1_type -56 163 1 1134 179 24 32 chr1 17347756 17348002 -264845662 - MLT1A1 LTR MaLR 0 365 122 2605 88 8 0 chr1 17348179 17348531 -264845133 - THE1A LTR MaLR 0 355 1 745 274 128 38 chr1 17348614 17349121 -264844543 + L1ME2 LINE L1 4695 5247 -899 4913 174 21 13 chr1 17350806 17351718 -264841946 + MER49 LTR ERV1 5 923 0 8679 51 21 100 chr1 17351785 17353736 -264839928 + L1PA8 LINE L1 4293 6172 0 424 245 54 44 chr1 17353750 17353954 -264839710 + L1ME2 LINE L1 5264 5469 -709 583 154 0 0 chr1 17353956 17354047 -264839617 - AluJb SINE Alu -13 299 209 * 733 110 0 0 chr1 17354042 17354142 -264839522 - AluSc SINE Alu -130 179 80 327 291 155 0 chr1 17354145 17354293 -264839371 + L1ME2 LINE L1 5461 5631 -531 747 227 91 49 chr1 17354379 17354687 -264838977 + L1ME2 LINE L1 5831 6151 -13 617 156 0 0 chr1 17354701 17354797 -264838867 + AluSg/x SINE Alu 193 288 -22 344 188 14 14 chr1 17355250 17355319 -264838345 - tRNA-His-CAC tRNA tRNA -3 72 4 2297 106 7 0 chr1 17355572 17355875 -264837789 - AluSx SINE Alu -7 305 1 574 56 0 0 chr1 17356548 17356619 -264837045 - tRNA-Gly-GGG tRNA tRNA 0 74 4 396 233 0 0 chr1 17358269 17358342 -264835322 - tRNA-Val-GTG tRNA tRNA -3 73 1 202 206 0 0 chr1 17359393 17359427 -264834237 + polypyrimidine Low_complexity Low_complexity 1 34 0 885 86 17 0 chr1 17359440 17359557 -264834107 + AluSg/x SINE Alu 168 286 -26 1499 160 30 4 chr1 17360118 17360381 -264833283 - L1M2 LINE L1 -633 5658 5389 2424 79 0 22 chr1 17362398 17362716 -264830948 + AluY SINE Alu 1 311 0 1350 80 5 37 chr1 17366482 17366669 -264826995 + AluSp SINE Alu 125 305 -8 2307 86 3 68 chr1 17367198 17367575 -264826089 + AluSx SINE Alu 1 356 0 180 267 33 0 chr1 17367617 17367677 -264825987 - MIR SINE MIR -71 191 130 488 236 36 0 chr1 17367678 17367788 -264825876 - L2 LINE L2 -4 3268 3155 193 246 0 62 chr1 17367821 17367886 -264825778 + MIR SINE MIR 62 122 -86 2463 78 0 3 chr1 17368679 17368986 -264824678 + AluSg SINE Alu 2 307 -3 2222 106 0 3 chr1 17369001 17369283 -264824381 + AluSg SINE Alu 1 281 -29 1200 130 30 0 chr1 17369288 17369457 -264824207 + AluSg/x SINE Alu 121 294 -18 210 251 185 20 chr1 17369536 17369731 -264823933 + L2 LINE L2 2887 3113 -200 2010 122 21 11 chr1 17369751 17370038 -264823626 - AluSx SINE Alu -22 290 1 629 320 89 0 chr1 17371995 17372220 -264821444 + MIR SINE MIR 17 261 -1 22 56 0 0 chr1 17372223 17372259 -264821405 + AT_rich Low_complexity Low_complexity 1 36 0 1807 169 0 3 chr1 17372284 17372579 -264821085 - AluJo SINE Alu -1 311 18 2217 134 0 0 chr1 17374379 17374686 -264818978 + AluSx SINE Alu 1 307 -5 507 225 58 68 chr1 17374754 17374945 -264818719 + MER53 DNA DNA 1 189 0 2490 60 17 3 chr1 17375291 17375593 -264818071 + AluSg SINE Alu 1 306 -4 298 304 15 24 chr1 17376503 17376627 -264817037 + MIR SINE MIR 37 162 -63 717 240 39 20 chr1 17377586 17377790 -264815874 + MIR SINE MIR 43 250 -12 3786 114 28 12 chr1 17378492 17379098 -264814566 + MER39B LTR ERV1 1 616 -37 2045 136 9 19 chr1 17379138 17379454 -264814210 + AluSq SINE Alu 1 313 0 305 300 117 0 chr1 17379468 17379588 -264814076 + L1M4 LINE L1 3113 3246 -2900 210 180 0 60 chr1 17380869 17380919 -264812745 + L2 LINE L2 3218 3264 -8 284 263 97 9 chr1 17381391 17381505 -264812159 - MIR SINE MIR -101 161 38 433 269 45 64 chr1 17381775 17382039 -264811625 - MER97c DNA MER1_type? -20 1070 812 358 197 0 0 chr1 17382420 17382491 -264811173 - MER97c DNA MER1_type? -485 605 535 723 100 0 54 chr1 17383330 17383460 -264810204 + FLAM_A SINE Alu 20 142 0 3253 245 66 35 chr1 17383785 17384157 -264809507 + L1ME3A LINE L1 2860 3219 -2951 2157 103 23 7 chr1 17384157 17384458 -264809206 + AluSp SINE Alu 1 306 -7 3253 245 66 35 chr1 17384458 17386103 -264807561 + L1ME3A LINE L1 3219 5721 -449 2367 114 78 24 chr1 17386103 17386514 -264807150 + Tigger2a DNA MER2_type 1 433 -1 3253 245 66 35 chr1 17386514 17386965 -264806699 + L1ME3A LINE L1 5721 6157 -13 365 323 39 0 chr1 17386981 17387136 -264806528 + MIR SINE MIR 72 232 -30 1585 110 196 8 chr1 17387309 17387564 -264806100 + AluSg1 SINE Alu 1 303 -6 445 298 13 20 chr1 17388297 17388448 -264805216 + MER5A DNA MER1_type 37 186 -3 225 65 0 0 chr1 17389204 17389235 -264804429 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 234 275 113 12 chr1 17389780 17389860 -264803804 - L2 LINE L2 -14 3299 3212 247 216 0 0 chr1 17389917 17389968 -264803696 - LTR67 LTR ERVL 0 557 507 342 276 69 18 chr1 17390572 17390733 -264802931 + MIR SINE MIR 42 215 -47 2301 74 0 11 chr1 17390844 17391154 -264802510 + AluY SINE Alu 1 307 0 195 337 36 12 chr1 17392863 17392946 -264800718 + L2 LINE L2 3208 3292 -21 4609 218 61 42 chr1 17393015 17395385 -264798279 + L1MD2 LINE L1 3920 6357 -2 198 0 0 0 chr1 17395724 17395746 -264797918 + (CAAG)n Simple_repeat Simple_repeat 3 24 0 194 400 72 16 chr1 17396771 17396896 -264796768 - L2 LINE L2 -4 3268 3137 829 270 169 34 chr1 17396909 17397353 -264796311 - MLT1J LTR MaLR -1 510 7 472 168 37 19 chr1 17398459 17398620 -264795044 + CT-rich Low_complexity Low_complexity 3 166 0 1551 284 129 36 chr1 17398655 17399061 -264794603 + L2 LINE L2 1985 2352 -961 2869 106 7 2 chr1 17399061 17399487 -264794177 + MSTA LTR MaLR 1 428 0 1551 284 129 36 chr1 17399487 17400297 -264793367 + L2 LINE L2 2352 3313 0 332 356 94 0 chr1 17400306 17400455 -264793209 + MIR SINE MIR 63 225 -37 235 310 166 0 chr1 17402248 17402393 -264791271 + MIR SINE MIR 86 254 -8 200 282 165 53 chr1 17403270 17403458 -264790206 + L2 LINE L2 3080 3288 -25 188 333 17 0 chr1 17403462 17403522 -264790142 - L2 LINE L2 -4 3309 3249 2093 197 69 6 chr1 17403605 17404071 -264789593 - MLT1D LTR MaLR -7 498 4 1356 228 110 21 chr1 17404296 17404488 -264789176 + MLT1C LTR MaLR 1 175 -292 195 42 0 0 chr1 17404488 17404512 -264789152 + (CAGAGA)n Simple_repeat Simple_repeat 6 29 0 1356 228 110 21 chr1 17404512 17404748 -264788916 + MLT1C LTR MaLR 175 467 0 2391 88 0 3 chr1 17405580 17405876 -264787788 - AluSx SINE Alu -17 295 1 675 295 92 38 chr1 17405876 17406409 -264787255 - L2 LINE L2 -7 3306 2736 552 15 0 0 chr1 17406413 17406478 -264787186 + (TG)n Simple_repeat Simple_repeat 1 65 0 396 243 0 0 chr1 17406512 17406623 -264787041 + CT-rich Low_complexity Low_complexity 3 113 0 478 281 88 26 chr1 17407140 17407332 -264786332 + MER63A DNA MER1_type 1 204 -6 451 333 52 0 chr1 17407613 17407748 -264785916 + MIR3 SINE MIR 28 169 -39 1092 184 128 3 chr1 17410224 17410512 -264783152 - MER33 DNA MER1_type 0 324 1 450 265 176 10 chr1 17411207 17411411 -264782253 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 17412285 17412316 -264781348 + (TCC)n Simple_repeat Simple_repeat 3 33 0 195 42 0 0 chr1 17414802 17414826 -264778838 + (CCA)n Simple_repeat Simple_repeat 1 24 0 566 255 148 5 chr1 17414907 17415103 -264778561 + MIR SINE MIR 36 259 -3 630 305 114 31 chr1 17415148 17415947 -264777717 - L2 LINE L2 -177 3095 2216 257 146 62 0 chr1 17416076 17416124 -264777540 + MLT1C LTR MaLR 100 150 -317 1102 212 82 0 chr1 17420788 17421057 -264772607 - Charlie1a DNA MER1_type -1116 339 49 27 0 0 0 chr1 17421323 17421350 -264772314 + AT_rich Low_complexity Low_complexity 1 27 0 317 236 143 14 chr1 17421652 17421792 -264771872 + MIR SINE MIR 96 253 -9 211 293 0 0 chr1 17421792 17421850 -264771814 + (TAG)n Simple_repeat Simple_repeat 1 58 0 344 349 77 13 chr1 17422168 17422403 -264771261 + MIR SINE MIR 1 250 -12 199 256 37 12 chr1 17423185 17423267 -264770397 - MIR3 SINE MIR -12 196 113 915 169 45 0 chr1 17423871 17424049 -264769615 - MER5A DNA MER1_type -1 188 3 484 88 0 0 chr1 17424424 17424492 -264769172 - Alu SINE Alu -15 297 230 1904 109 26 8 chr1 17424492 17424759 -264768905 - AluSx SINE Alu -40 272 1 238 252 98 49 chr1 17428104 17428227 -264765437 + L2 LINE L2 3144 3272 0 2236 107 0 0 chr1 17428444 17428725 -264764939 + AluSx SINE Alu 1 281 -31 261 57 0 0 chr1 17428725 17428760 -264764904 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 308 157 56 192 chr1 17429053 17429213 -264764451 + AluJb SINE Alu 88 206 -96 235 91 0 0 chr1 17429601 17429634 -264764030 - U1 snRNA snRNA 0 165 133 1508 198 134 71 chr1 17429634 17430170 -264763494 - LTR4 LTR ERV1 0 596 27 753 196 14 0 chr1 17430760 17430930 -264762734 - AluJb SINE Alu 0 311 140 1940 125 87 0 chr1 17431072 17431359 -264762305 - AluSx SINE Alu 0 312 1 450 143 119 0 chr1 17432167 17432251 -264761413 - AluSg/x SINE Alu -8 302 209 2204 241 10 23 chr1 17432252 17432770 -264760894 - MER87 LTR ERV1 -30 511 1 2071 108 54 14 chr1 17432810 17433106 -264760558 - AluSg SINE Alu -2 308 1 2059 136 4 0 chr1 17433175 17433486 -264760178 + AluSg SINE Alu 1 312 0 24 32 0 0 chr1 17433510 17433541 -264760123 + AT_rich Low_complexity Low_complexity 1 31 0 2164 135 0 0 chr1 17433710 17434014 -264759650 + AluSx SINE Alu 3 306 -6 21 36 0 0 chr1 17434024 17434052 -264759612 + AT_rich Low_complexity Low_complexity 1 28 0 590 167 20 0 chr1 17434055 17434157 -264759507 - FRAM SINE Alu -33 143 40 545 189 0 0 chr1 17434162 17434268 -264759396 - FLAM_A SINE Alu -19 123 18 608 176 340 80 chr1 17434323 17434561 -264759103 - AluJo SINE Alu -1 301 2 21 36 0 0 chr1 17434561 17434589 -264759075 + AT_rich Low_complexity Low_complexity 1 28 0 393 22 0 0 chr1 17435645 17435691 -264757973 + (GA)n Simple_repeat Simple_repeat 1 46 0 1691 122 0 24 chr1 17435864 17436027 -264757637 - AluSx SINE Alu -14 298 141 249 33 0 0 chr1 17436027 17436057 -264757607 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1691 122 0 24 chr1 17436057 17436139 -264757525 - AluSx SINE Alu -171 141 59 462 227 80 13 chr1 17436625 17436775 -264756889 - REP3 LTR ERV -401 161 2 1462 0 0 0 chr1 17437281 17437445 -264756219 - U1 snRNA snRNA -1 164 1 289 319 51 14 chr1 17437829 17437967 -264755697 - Charlie4 DNA MER1_type -4 1957 1815 3036 131 37 4 chr1 17438546 17439028 -264754636 + MER41E LTR ERV1 15 512 0 226 350 83 0 chr1 17439143 17439300 -264754364 + HAL1 LINE L1 527 696 -1811 2740 142 49 46 chr1 17439316 17439886 -264753778 - LTR8A LTR ERV1 0 727 156 919 170 16 27 chr1 17439898 17440086 -264753578 - MER1B DNA MER1_type -2 337 152 1834 308 68 27 chr1 17440965 17441878 -264751786 - PRIMA41-int LTR ERV1 -2057 5699 4750 2417 99 8 0 chr1 17442003 17442355 -264751309 - THE1A LTR MaLR 0 355 1 585 292 124 38 chr1 17442440 17442947 -264750717 + L1M4 LINE L1 4697 5247 -899 1999 57 54 50 chr1 17444139 17444461 -264749203 + AluY SINE Alu 1 323 0 460 251 84 52 chr1 17444800 17444962 -264748702 + L1ME2 LINE L1 5000 5155 -1019 4492 184 19 14 chr1 17444962 17445877 -264747787 + MER49 LTR ERV1 5 923 0 460 251 84 52 chr1 17445877 17445944 -264747720 + L1ME2 LINE L1 5155 5218 -956 8335 47 3 0 chr1 17445944 17447793 -264745871 + L1PA4 LINE L1 4293 6151 -4 460 251 84 52 chr1 17447793 17448021 -264745643 + L1ME2 LINE L1 5218 5471 -703 523 169 0 0 chr1 17448021 17448110 -264745554 - AluJb SINE Alu -15 297 209 * 692 120 0 0 chr1 17448105 17448205 -264745459 - AluSg/x SINE Alu -131 179 80 311 311 155 0 chr1 17448208 17448356 -264745308 + L1ME2 LINE L1 5461 5631 -531 674 238 94 49 chr1 17448442 17448749 -264744915 + L1ME2 LINE L1 5831 6151 -13 600 146 0 0 chr1 17448763 17448859 -264744805 + AluSg/x SINE Alu 192 287 -22 334 232 0 0 chr1 17449312 17449381 -264744283 - tRNA-His-CAC tRNA tRNA -3 72 4 2246 108 10 0 chr1 17449633 17449929 -264743735 - AluSx SINE Alu -13 299 1 565 54 0 0 chr1 17450602 17450676 -264742988 - tRNA-Gly-GGG tRNA tRNA 0 74 1 430 206 0 0 chr1 17452322 17452395 -264741269 - tRNA-Val-GTG tRNA tRNA -3 73 1 910 77 17 0 chr1 17453493 17453610 -264740054 + AluSg/x SINE Alu 168 286 -26 1406 164 30 4 chr1 17454174 17454437 -264739227 - L1M2 LINE L1 -633 5658 5389 2436 82 0 22 chr1 17456456 17456774 -264736890 + AluY SINE Alu 1 311 0 1350 80 5 37 chr1 17460540 17460727 -264732937 + AluSp SINE Alu 125 305 -8 2299 86 3 68 chr1 17461254 17461630 -264732034 + AluSx SINE Alu 1 355 0 180 267 33 0 chr1 17461672 17461732 -264731932 - MIR SINE MIR -71 191 130 488 236 36 0 chr1 17461733 17461843 -264731821 - L2 LINE L2 -4 3268 3155 193 246 0 62 chr1 17461876 17461941 -264731723 + MIR SINE MIR 62 122 -86 2476 75 0 3 chr1 17462734 17463041 -264730623 + AluSg SINE Alu 2 307 -3 2177 107 4 4 chr1 17463056 17463337 -264730327 + AluSg SINE Alu 1 281 -29 1200 130 30 0 chr1 17463342 17463511 -264730153 + AluSg/x SINE Alu 119 292 -18 221 246 185 20 chr1 17463590 17463785 -264729879 + L2 LINE L2 2887 3113 -200 2009 122 21 11 chr1 17463805 17464092 -264729572 - AluSx SINE Alu -22 290 1 629 320 89 0 chr1 17466053 17466278 -264727386 + MIR SINE MIR 17 261 -1 22 56 0 0 chr1 17466281 17466317 -264727347 + AT_rich Low_complexity Low_complexity 1 36 0 1807 169 0 3 chr1 17466342 17466637 -264727027 - AluJo SINE Alu -1 311 18 2089 134 0 0 chr1 17468437 17468744 -264724920 + AluSx SINE Alu 1 307 -5 517 225 58 68 chr1 17468812 17469003 -264724661 + MER53 DNA DNA 1 189 0 2344 60 17 3 chr1 17469347 17469647 -264724017 + AluSg SINE Alu 1 304 -6 248 198 10 59 chr1 17470077 17470178 -264723486 + (CGGGG)n Simple_repeat Simple_repeat 5 100 0 22 35 0 0 chr1 17470420 17470449 -264723215 + GC_rich Low_complexity Low_complexity 1 29 0 202 184 0 0 chr1 17470747 17470785 -264722879 - MIR SINE MIR -67 141 104 186 400 103 0 chr1 17470967 17471142 -264722522 - MIR SINE MIR -65 197 5 193 368 23 0 chr1 17471788 17471875 -264721789 - MIR SINE MIR -1 261 173 2139 69 0 35 chr1 17471910 17472223 -264721441 + AluSc SINE Alu 1 303 0 2097 103 34 0 chr1 17472232 17472523 -264721141 + AluSq SINE Alu 1 301 -12 338 302 63 16 chr1 17472571 17472697 -264720967 - MIR SINE MIR -100 162 31 201 213 138 12 chr1 17473678 17473758 -264719906 - MIR SINE MIR -74 134 45 278 316 13 19 chr1 17474291 17474446 -264719218 + (CA)n Simple_repeat Simple_repeat 2 155 0 250 234 39 0 chr1 17475077 17475154 -264718510 + C-rich Low_complexity Low_complexity 5 84 0 214 232 49 0 chr1 17478108 17478190 -264715474 + (CCCG)n Simple_repeat Simple_repeat 4 89 0 222 37 0 0 chr1 17478407 17478434 -264715230 + (CCG)n Simple_repeat Simple_repeat 2 28 0 192 219 47 0 chr1 17478766 17478830 -264714834 + MIR SINE MIR 55 121 -87 201 250 0 83 chr1 17479767 17479887 -264713777 + C-rich Low_complexity Low_complexity 5 114 0 1631 95 0 13 chr1 17481636 17481867 -264711797 - AluSg/x SINE Alu 0 310 83 226 100 0 0 chr1 17481867 17481897 -264711767 - Alu SINE Alu -273 30 1 426 167 42 19 chr1 17482051 17482152 -264711512 - MER5A DNA MER1_type -83 106 5 183 295 123 33 chr1 17482143 17482265 -264711399 + MIR3 SINE MIR 13 145 -63 * 193 217 11 130 chr1 17482298 17482331 -264711333 - L2 LINE L2 -1 3271 3236 2278 100 0 3 chr1 17482331 17482641 -264711023 - AluSx SINE Alu -3 309 1 193 217 11 130 chr1 17482641 17482699 -264710965 - L2 LINE L2 -36 3236 3191 201 272 88 44 chr1 17482836 17482972 -264710692 - L2 LINE L2 -166 3106 2965 206 79 0 26 chr1 17485478 17485516 -264708148 + (CCCG)n Simple_repeat Simple_repeat 3 39 0 894 179 39 5 chr1 17487170 17487377 -264706287 - Charlie5 DNA MER1_type -27 2585 2372 1376 143 6 146 chr1 17487378 17487509 -264706155 + AluJb SINE Alu 1 149 -163 1993 118 17 0 chr1 17487509 17487805 -264705859 - AluSq SINE Alu -12 301 1 2281 97 0 0 chr1 17487805 17488105 -264705559 - AluSq SINE Alu -13 300 1 1376 143 6 146 chr1 17488105 17488139 -264705525 + AluJb SINE Alu 148 185 -127 2121 118 0 7 chr1 17488139 17488436 -264705228 + AluSx SINE Alu 1 295 -17 1376 143 6 146 chr1 17488436 17488447 -264705217 + AluJb SINE Alu 185 196 -116 2346 80 0 0 chr1 17488447 17488746 -264704918 + AluSx SINE Alu 1 299 -13 1376 143 6 146 chr1 17488746 17488895 -264704769 + AluJb SINE Alu 196 283 -29 396 0 0 0 chr1 17488895 17488939 -264704725 + (TAA)n Simple_repeat Simple_repeat 2 45 0 235 269 46 56 chr1 17490183 17490291 -264703373 - L2 LINE L2 -7 3265 3159 589 195 57 0 chr1 17490704 17490827 -264702837 + MER3 DNA MER1_type 80 209 0 277 204 0 0 chr1 17490784 17490833 -264702831 - MER3 DNA MER1_type -119 90 42 * 342 0 0 0 chr1 17491510 17491548 -264702116 + (TAA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr1 17492592 17492612 -264701052 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 17493234 17493256 -264700408 + AT_rich Low_complexity Low_complexity 1 22 0 212 0 0 35 chr1 17493469 17493498 -264700166 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 203 189 0 0 chr1 17494869 17494906 -264698758 + A-rich Low_complexity Low_complexity 1 37 0 496 285 180 10 chr1 17494930 17495130 -264698534 + MIR SINE MIR 3 236 -26 357 269 108 38 chr1 17495405 17495591 -264698073 + MIR SINE MIR 50 248 -14 180 0 0 0 chr1 17496254 17496274 -264697390 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1972 104 4 14 chr1 17496276 17496556 -264697108 - AluSg SINE Alu -33 277 1 502 153 0 0 chr1 17497881 17497953 -264695711 + tRNA-Val-GTG tRNA tRNA 1 72 -4 234 81 0 0 chr1 17497959 17497996 -264695668 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 594 56 0 0 chr1 17499618 17499690 -264693974 + tRNA-Gly-GGG tRNA tRNA 1 72 -2 1998 117 10 23 chr1 17500354 17500662 -264693002 + AluSx SINE Alu 1 304 -8 336 232 0 0 chr1 17500915 17500984 -264692680 + tRNA-His-CAC tRNA tRNA 4 72 -3 556 182 0 0 chr1 17501421 17501533 -264692131 - AluSg/x SINE Alu 0 304 193 5247 40 0 0 chr1 17501539 17502210 -264691454 - L1P LINE L1 -1183 4963 4293 423 299 141 25 chr1 17502211 17502277 -264691387 - L1M4 LINE L1 -891 5255 5198 4973 172 30 16 chr1 17502277 17503183 -264690481 - MER49 LTR ERV1 0 923 5 423 299 141 25 chr1 17503183 17503217 -264690447 - L1M4 LINE L1 -948 5198 5169 2762 13 0 0 chr1 17503217 17503528 -264690136 - AluYb8 SINE Alu -7 311 1 423 299 141 25 chr1 17503528 17503667 -264689997 - L1M4 LINE L1 -977 5169 4987 1869 57 54 50 chr1 17503995 17504317 -264689347 - AluY SINE Alu 0 323 1 614 292 126 39 chr1 17505509 17506016 -264687648 - L1M4 LINE L1 -899 5247 4697 2587 99 8 0 chr1 17506101 17506453 -264687211 + THE1A LTR MaLR 1 355 0 1948 315 66 25 chr1 17506578 17507491 -264686173 + PRIMA41-int LTR ERV1 4750 5699 -2057 926 170 16 27 chr1 17508370 17508558 -264685106 + MER1B DNA MER1_type 152 337 -2 2768 142 49 46 chr1 17508570 17509140 -264684524 + LTR8A LTR ERV1 156 727 0 239 350 83 0 chr1 17509156 17509313 -264684351 - HAL1 LINE L1 -1811 696 527 3055 131 37 4 chr1 17509428 17509910 -264683754 - MER41E LTR ERV1 0 512 15 307 319 51 14 chr1 17510489 17510627 -264683037 + Charlie4 DNA MER1_type 1815 1957 -4 1541 0 0 0 chr1 17511011 17511175 -264682489 + U1 snRNA snRNA 1 164 -1 488 227 80 13 chr1 17511681 17511831 -264681833 + REP3 LTR ERV 2 161 -401 1594 122 0 24 chr1 17512317 17512399 -264681265 + AluSx SINE Alu 59 141 -171 249 33 0 0 chr1 17512399 17512429 -264681235 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1594 122 0 24 chr1 17512429 17512592 -264681072 + AluSx SINE Alu 141 298 -14 393 22 0 0 chr1 17512765 17512811 -264680853 + (TC)n Simple_repeat Simple_repeat 1 46 0 21 36 0 0 chr1 17513867 17513895 -264679769 + AT_rich Low_complexity Low_complexity 1 28 0 721 218 268 8 chr1 17513895 17514134 -264679530 + AluJo SINE Alu 2 302 0 591 198 0 0 chr1 17514190 17514301 -264679363 + FLAM_A SINE Alu 18 128 -14 634 167 20 0 chr1 17514301 17514403 -264679261 + AluJo/FRAM SINE Alu 176 279 -33 21 36 0 0 chr1 17514406 17514434 -264679230 + AT_rich Low_complexity Low_complexity 1 28 0 2037 135 0 0 chr1 17514444 17514748 -264678916 - AluSx SINE Alu -6 306 3 24 32 0 0 chr1 17514917 17514948 -264678716 + AT_rich Low_complexity Low_complexity 1 31 0 1929 136 4 0 chr1 17514972 17515283 -264678381 - AluSg SINE Alu 0 312 1 1944 108 54 14 chr1 17515352 17515648 -264678016 + AluSg SINE Alu 1 308 -2 2239 241 10 23 chr1 17515688 17516206 -264677458 + MER87 LTR ERV1 1 511 -30 458 187 110 0 chr1 17516207 17516298 -264677366 + AluSg/x SINE Alu 209 309 -1 1818 125 87 0 chr1 17517096 17517383 -264676281 + AluSx SINE Alu 1 312 0 811 200 12 24 chr1 17517525 17517668 -264675996 + AluJb SINE Alu 140 287 -25 244 0 0 0 chr1 17517668 17517695 -264675969 + (CAAA)n Simple_repeat Simple_repeat 2 152 0 811 200 12 24 chr1 17517695 17517721 -264675943 + AluJb SINE Alu 287 312 0 1540 220 121 58 chr1 17518285 17518821 -264674843 + LTR4 LTR ERV1 27 596 0 238 91 0 0 chr1 17518821 17518854 -264674810 + U1 snRNA snRNA 133 165 0 348 166 57 176 chr1 17519242 17519399 -264674265 - AluJb SINE Alu -96 206 88 261 57 0 0 chr1 17519692 17519727 -264673937 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2124 103 0 0 chr1 17519727 17520008 -264673656 - AluSx SINE Alu -31 281 1 242 252 98 49 chr1 17520225 17520348 -264673316 - L2 LINE L2 0 3272 3144 1766 112 26 8 chr1 17523693 17523960 -264669704 + AluSx SINE Alu 1 272 -40 515 88 0 0 chr1 17523960 17524028 -264669636 + Alu SINE Alu 227 294 -15 992 169 45 0 chr1 17524405 17524583 -264669081 + MER5A DNA MER1_type 3 188 -1 195 256 37 12 chr1 17525186 17525268 -264668396 + MIR3 SINE MIR 113 196 -12 327 379 68 4 chr1 17526050 17526285 -264667379 - MIR SINE MIR -12 250 1 211 293 0 0 chr1 17526604 17526662 -264667002 + (CTA)n Simple_repeat Simple_repeat 1 58 0 292 273 144 7 chr1 17526662 17526801 -264666863 - MIR SINE MIR -9 253 96 27 0 0 0 chr1 17527103 17527130 -264666534 + AT_rich Low_complexity Low_complexity 1 27 0 1054 216 82 0 chr1 17527396 17527665 -264665999 + Charlie1a DNA MER1_type 49 339 -1116 1039 208 51 0 chr1 17533898 17534095 -264659569 + MER3 DNA MER1_type 3 209 0 252 274 83 0 chr1 17534539 17534623 -264659041 - L2 LINE L2 -9 3263 3173 1852 145 7 20 chr1 17535645 17535948 -264657716 + AluJo SINE Alu 1 299 -13 6364 98 26 53 chr1 17536029 17536760 -264656904 - L1MA2 LINE L1 0 6304 5555 2242 86 0 22 chr1 17536760 17537073 -264656591 - AluY SINE Alu -5 306 1 2218 110 0 0 chr1 17537073 17537381 -264656283 - AluSq SINE Alu -2 311 4 6364 98 26 53 chr1 17537381 17537850 -264655814 - L1MA2 LINE L1 -747 5557 5133 794 193 12 6 chr1 17537916 17538082 -264655582 - L1MA10 LINE L1 0 6334 6168 189 0 0 0 chr1 17538570 17538591 -264655073 + (CTG)n Simple_repeat Simple_repeat 1 21 0 1388 185 82 4 chr1 17538854 17539124 -264654540 - AluJo SINE Alu -21 291 1 221 275 101 0 chr1 17540001 17540070 -264653594 - MIR SINE MIR -79 183 108 2320 89 0 0 chr1 17540075 17540378 -264653286 - AluSg SINE Alu -7 303 1 2045 128 3 7 chr1 17540384 17540689 -264652975 - AluSq SINE Alu -9 304 1 1105 212 9 0 chr1 17540882 17541113 -264652551 - AluJb SINE Alu -77 235 3 1055 223 116 79 chr1 17541115 17541188 -264652476 - L1MC5 LINE L1 -302 7659 7590 2092 125 0 3 chr1 17541188 17541493 -264652171 + AluSx SINE Alu 1 304 -8 1055 223 116 79 chr1 17541493 17541582 -264652082 - L1MC5 LINE L1 -371 7590 7506 1849 114 33 4 chr1 17541582 17541895 -264651769 - AluSx SINE Alu 0 321 1 1055 223 116 79 chr1 17541895 17542314 -264651350 - L1MC5 LINE L1 -455 7506 7054 1063 186 10 0 chr1 17542349 17542542 -264651122 - AluJo SINE Alu -21 291 97 31 58 0 0 chr1 17542570 17542622 -264651042 + AT_rich Low_complexity Low_complexity 1 52 0 2184 117 0 0 chr1 17542622 17542929 -264650735 + AluSx SINE Alu 1 307 -5 204 235 0 0 chr1 17543078 17543129 -264650535 + T-rich Low_complexity Low_complexity 1 51 0 2210 107 0 19 chr1 17543162 17543480 -264650184 - AluSx SINE Alu 0 312 1 381 43 0 0 chr1 17543532 17543579 -264650085 + (CA)n Simple_repeat Simple_repeat 1 47 0 1088 306 44 21 chr1 17543597 17544074 -264649590 - L1MC4a LINE L1 -1892 5916 5429 738 151 22 65 chr1 17544082 17544221 -264649443 - FLAM_A SINE Alu 0 133 1 2056 106 0 3 chr1 17544231 17544544 -264649120 - AluSx SINE Alu 0 312 1 1978 139 7 0 chr1 17545023 17545326 -264648338 + AluSx SINE Alu 1 305 -7 313 299 0 0 chr1 17545398 17545475 -264648189 - MIR SINE MIR -113 149 73 376 270 65 12 chr1 17545818 17546017 -264647647 - MIR SINE MIR -32 230 18 289 267 23 0 chr1 17546101 17546187 -264647477 + MIR SINE MIR 46 133 -75 1570 76 0 36 chr1 17547949 17547998 -264645666 + AluY SINE Alu 88 137 -174 1846 121 10 49 chr1 17547998 17548303 -264645361 + AluSq SINE Alu 3 295 -18 2284 84 0 0 chr1 17548305 17548602 -264645062 + AluY SINE Alu 2 298 -13 1570 76 0 36 chr1 17548602 17548772 -264644892 + AluY SINE Alu 138 302 -9 286 294 64 18 chr1 17549608 17549717 -264643947 - MIR SINE MIR -91 171 58 211 229 0 0 chr1 17549718 17549766 -264643898 + (TAA)n Simple_repeat Simple_repeat 3 50 0 841 259 81 0 chr1 17549787 17550023 -264643641 - MIR SINE MIR 0 262 8 321 233 94 0 chr1 17550110 17550160 -264643504 - MIR SINE MIR -31 231 187 2212 98 0 0 chr1 17550160 17550456 -264643208 + AluSx SINE Alu 1 296 -16 321 233 94 0 chr1 17550456 17550518 -264643146 - MIR SINE MIR -75 187 104 249 261 0 0 chr1 17551689 17551754 -264641910 + (TCTCTG)n Simple_repeat Simple_repeat 5 69 0 415 205 82 16 chr1 17552263 17552385 -264641279 + MIR SINE MIR 16 145 -117 1978 113 28 0 chr1 17552387 17552678 -264640986 + AluSx SINE Alu 1 299 -13 2089 100 40 0 chr1 17552990 17553290 -264640374 - AluSx SINE Alu 0 312 1 283 241 38 13 chr1 17553321 17553400 -264640264 - MIR SINE MIR -87 121 41 449 293 52 24 chr1 17554163 17554375 -264639289 + MIR SINE MIR 10 227 -35 506 273 47 17 chr1 17554758 17554930 -264638734 + MIR SINE MIR 78 254 -8 2284 67 3 0 chr1 17554934 17555250 -264638414 - AluSp SINE Alu 0 317 1 2057 125 0 0 chr1 17555257 17555546 -264638118 - AluSq SINE Alu -24 289 1 246 236 0 0 chr1 17555656 17555711 -264637953 - MIR SINE MIR -118 144 90 530 301 125 14 chr1 17556366 17556582 -264637082 + MIR SINE MIR 17 256 -6 293 377 14 0 chr1 17556647 17556785 -264636879 + MER91B DNA MER1_type 1 140 -50 2131 116 0 0 chr1 17556835 17557136 -264636528 + AluY SINE Alu 1 301 -10 293 266 224 6 chr1 17558160 17558330 -264635334 + MIR3 SINE MIR 45 250 -12 423 259 38 8 chr1 17558522 17558653 -264635011 + MIR SINE MIR 60 194 -68 225 319 37 7 chr1 17559312 17559447 -264634217 - L1ME LINE L1 -303 5818 5680 215 237 0 17 chr1 17560984 17561043 -264632621 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 451 194 48 81 chr1 17561155 17561241 -264632423 + FLAM_A SINE Alu 20 102 -209 2336 90 3 0 chr1 17561241 17561542 -264632122 - AluSx SINE Alu -10 302 1 451 194 48 81 chr1 17561542 17561579 -264632085 + FLAM_A SINE Alu 102 139 -172 222 37 0 0 chr1 17561645 17561672 -264631992 + (TA)n Simple_repeat Simple_repeat 1 27 0 462 388 41 8 chr1 17561703 17561948 -264631716 + MIR SINE MIR 5 257 -5 922 191 104 0 chr1 17561982 17562223 -264631441 - L1ME2 LINE L1 -10 6154 5889 207 0 0 0 chr1 17562329 17562352 -264631312 + (TC)n Simple_repeat Simple_repeat 2 24 0 1882 143 0 11 chr1 17562352 17562639 -264631025 - AluJb SINE Alu -28 284 1 886 282 88 55 chr1 17563072 17563693 -264629971 - L2 LINE L2 -213 3059 2403 226 148 277 59 chr1 17565627 17565672 -264627992 - L1ME3A LINE L1 -11 6159 6125 1891 152 3 0 chr1 17565672 17565969 -264627695 + AluJb SINE Alu 3 300 -12 226 148 277 59 chr1 17565969 17566024 -264627640 - L1ME3A LINE L1 -45 6125 6037 664 246 149 22 chr1 17566024 17566456 -264627208 - L1ME LINE L1 -515 5655 5152 1841 154 7 7 chr1 17566456 17566762 -264626902 - AluJb SINE Alu -6 306 1 664 246 149 22 chr1 17566762 17566884 -264626780 - L1ME LINE L1 -1018 5152 5047 1787 156 6 16 chr1 17566897 17567211 -264626453 - AluJb SINE Alu -1 311 1 296 292 9 26 chr1 17567215 17567328 -264626336 - L1ME LINE L1 -1194 4952 4842 303 185 0 0 chr1 17567368 17567422 -264626242 + FLAM SINE Alu 78 131 -2 25 31 0 0 chr1 17567422 17567454 -264626210 + AT_rich Low_complexity Low_complexity 1 32 0 1849 166 10 0 chr1 17567865 17568160 -264625504 - AluJb SINE Alu -14 298 1 26 30 0 0 chr1 17568167 17568200 -264625464 + AT_rich Low_complexity Low_complexity 1 33 0 397 308 17 0 chr1 17568291 17568408 -264625256 + L2 LINE L2 3195 3313 0 460 177 71 44 chr1 17568485 17568598 -264625066 + MLT1I LTR MaLR 277 392 -17 955 152 28 28 chr1 17568833 17569011 -264624653 - AluJo SINE Alu -52 260 83 474 277 43 0 chr1 17569062 17569203 -264624461 + L2 LINE L2 2371 2517 -797 218 250 0 0 chr1 17569559 17569607 -264624057 + L2 LINE L2 3265 3312 -1 505 185 12 31 chr1 17570677 17570839 -264622825 + CT-rich Low_complexity Low_complexity 2 160 0 3158 193 27 6 chr1 17571310 17572087 -264621577 - L1MC2 LINE L1 -3 6341 5459 283 280 13 83 chr1 17572085 17572242 -264621422 - MLT1-int LTR MaLR -216 1155 1010 * 1515 205 58 11 chr1 17572351 17572712 -264620952 - L1ME2 LINE L1 -263 5901 5524 212 229 66 16 chr1 17573681 17573742 -264619922 - MIR3 SINE MIR -7 201 138 474 249 94 48 chr1 17574321 17574606 -264619058 + LTR33 LTR ERVL 9 275 -248 365 372 9 9 chr1 17574644 17574867 -264618797 + HERV16 LTR ERVL 1228 1450 -3546 626 280 45 20 chr1 17575053 17575253 -264618411 + HERV16 LTR ERVL 1799 2003 -3761 309 304 0 0 chr1 17575273 17575352 -264618312 + LTR16B LTR ERVL 1 79 -385 1903 232 61 62 chr1 17576036 17576661 -264617003 - MLT1E3 LTR MaLR 0 624 1 369 329 62 5 chr1 17576774 17576984 -264616680 + L1ME3 LINE L1 152 373 -6023 266 227 41 52 chr1 17577513 17577610 -264616054 + L1ME3 LINE L1 2713 2808 -3407 21 71 0 0 chr1 17577719 17577761 -264615903 + AT_rich Low_complexity Low_complexity 1 42 0 1283 286 31 41 chr1 17577792 17578397 -264615267 + L1ME3 LINE L1 3902 4500 -1715 420 67 0 0 chr1 17578417 17578477 -264615187 + (TG)n Simple_repeat Simple_repeat 2 61 0 192 77 0 0 chr1 17578603 17578629 -264615035 + (TA)n Simple_repeat Simple_repeat 1 26 0 559 212 20 7 chr1 17578633 17578784 -264614880 + L1ME3 LINE L1 5364 5516 -715 1231 118 0 6 chr1 17578827 17578997 -264614667 - AluSq SINE Alu -144 169 1 649 261 16 39 chr1 17579000 17579052 -264614612 + L1ME3 LINE L1 5980 6032 -199 2573 165 5 2 chr1 17579052 17579483 -264614181 + MSTB1 LTR MaLR 1 432 0 649 261 16 39 chr1 17579483 17579687 -264613977 + L1ME3 LINE L1 6032 6230 -1 248 298 97 0 chr1 17580002 17580126 -264613538 + MIR SINE MIR 54 189 -73 3658 215 34 12 chr1 17580761 17581841 -264611823 + L1MB7 LINE L1 5041 6158 -26 1917 165 10 0 chr1 17581946 17582243 -264611421 + AluJo SINE Alu 1 300 -12 275 217 51 0 chr1 17582381 17582460 -264611204 + MIR SINE MIR 47 134 -74 210 306 112 8 chr1 17582506 17582640 -264611024 + MER5A DNA MER1_type 14 161 -28 223 277 15 15 chr1 17584222 17584287 -264609377 + MIR SINE MIR 82 146 -62 1797 163 10 0 chr1 17586660 17586967 -264606697 + AluSg SINE Alu 1 310 0 424 272 7 14 chr1 17587136 17587283 -264606381 + MIR SINE MIR 96 241 -21 388 253 0 0 chr1 17588290 17588385 -264605279 - L1MB5 LINE L1 -9 6165 6071 1113 196 5 5 chr1 17591023 17591227 -264602437 + AluJb SINE Alu 1 204 -108 2417 69 0 20 chr1 17591313 17591619 -264602045 + AluY SINE Alu 1 300 -11 1924 145 6 6 chr1 17591625 17591936 -264601728 + AluSx SINE Alu 1 311 -1 1813 150 0 0 chr1 17593018 17593291 -264600373 + AluSg SINE Alu 1 273 -37 326 73 0 18 chr1 17593293 17593348 -264600316 + (TAA)n Simple_repeat Simple_repeat 1 54 0 440 265 7 14 chr1 17593501 17593648 -264600016 + MIR SINE MIR 96 241 -21 380 253 0 0 chr1 17594595 17594690 -264598974 - L1MB5 LINE L1 -9 6165 6071 1113 196 5 5 chr1 17597322 17597526 -264596138 + AluJb SINE Alu 1 204 -108 2294 86 0 20 chr1 17597612 17597915 -264595749 + AluY SINE Alu 1 297 -14 1980 138 6 6 chr1 17597921 17598233 -264595431 + AluSx SINE Alu 1 312 0 1808 147 0 0 chr1 17599314 17599587 -264594077 + AluSg SINE Alu 1 273 -37 211 143 0 24 chr1 17599592 17599634 -264594030 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 385 276 21 14 chr1 17599784 17599929 -264593735 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 17600872 17600967 -264592697 - L1MB5 LINE L1 -9 6165 6071 1828 156 0 0 chr1 17604064 17604339 -264589325 - AluSx SINE Alu 0 312 38 16356 80 5 48 chr1 17605053 17606440 -264587224 - L1P LINE L1 -2920 3226 1991 5417 47 2 0 chr1 17606440 17607085 -264586579 + L1PA4 LINE L1 5494 6139 -16 16356 80 5 48 chr1 17607085 17608156 -264585508 - L1P LINE L1 -4155 1991 875 423 0 0 0 chr1 17610373 17610420 -264583244 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 167 19 0 chr1 17611923 17611977 -264581687 + CT-rich Low_complexity Low_complexity 1 55 0 387 0 0 0 chr1 17613480 17613523 -264580141 + (TG)n Simple_repeat Simple_repeat 2 44 0 281 157 36 12 chr1 17614615 17614698 -264578966 + GA-rich Low_complexity Low_complexity 2 86 0 270 73 0 0 chr1 17615104 17615145 -264578519 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 221 167 19 0 chr1 17616640 17616694 -264576970 + CT-rich Low_complexity Low_complexity 1 55 0 351 0 0 0 chr1 17618195 17618234 -264575430 + (TG)n Simple_repeat Simple_repeat 2 40 0 281 157 36 12 chr1 17619326 17619409 -264574255 + GA-rich Low_complexity Low_complexity 2 86 0 270 73 0 0 chr1 17619815 17619856 -264573808 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 358 222 108 0 chr1 17621414 17621529 -264572135 + AluSp SINE Alu 127 206 -97 269 61 0 0 chr1 17621903 17621936 -264571728 - U1 snRNA snRNA 0 165 133 1652 193 130 71 chr1 17621936 17622474 -264571190 - LTR4 LTR ERV1 0 596 27 769 203 14 0 chr1 17623064 17623234 -264570430 - AluJb SINE Alu 0 311 140 1658 111 148 0 chr1 17623375 17623645 -264570019 - AluSg SINE Alu 0 310 1 2037 121 0 0 chr1 17623714 17624015 -264569649 + AluSg SINE Alu 1 301 0 24 32 0 0 chr1 17624050 17624081 -264569583 + AT_rich Low_complexity Low_complexity 1 31 0 2050 119 0 0 chr1 17624250 17624543 -264569121 + AluSx SINE Alu 3 295 -17 21 36 0 0 chr1 17624564 17624592 -264569072 + AT_rich Low_complexity Low_complexity 1 28 0 599 176 20 0 chr1 17624595 17624697 -264568967 - FRAM SINE Alu -33 143 40 573 189 0 0 chr1 17624702 17624808 -264568856 - FLAM_A SINE Alu -19 123 18 673 176 339 80 chr1 17624864 17625103 -264568561 - AluJo SINE Alu 0 302 2 21 36 0 0 chr1 17625103 17625131 -264568533 + AT_rich Low_complexity Low_complexity 1 28 0 303 28 0 0 chr1 17626187 17626223 -264567441 + (GA)n Simple_repeat Simple_repeat 1 36 0 1567 122 0 24 chr1 17626396 17626559 -264567105 - AluSx SINE Alu -14 298 141 363 44 0 0 chr1 17626559 17626604 -264567060 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1567 122 0 24 chr1 17626604 17626686 -264566978 - AluSx SINE Alu -171 141 59 479 220 80 13 chr1 17627172 17627322 -264566342 - REP3 LTR ERV -401 161 2 303 181 139 0 chr1 17627323 17627395 -264566269 + MER45B DNA AcHobo 312 393 -647 1535 0 0 0 chr1 17627840 17628004 -264565660 - U1 snRNA snRNA -1 164 1 279 304 58 22 chr1 17628388 17628526 -264565138 - Charlie4 DNA MER1_type -4 1957 1815 3198 122 37 4 chr1 17629104 17629586 -264564078 + MER41E LTR ERV1 15 512 0 309 357 83 0 chr1 17629701 17629858 -264563806 + HAL1 LINE L1 527 696 -1811 2899 137 49 46 chr1 17629874 17630444 -264563220 - LTR8A LTR ERV1 0 727 156 1023 154 16 27 chr1 17630456 17630644 -264563020 - MER1B DNA MER1_type -2 337 152 2730 302 52 55 chr1 17631524 17632438 -264561226 - PRIMA41-int LTR ERV1 -2057 5699 4818 1943 110 52 0 chr1 17632438 17632729 -264560935 - AluSx SINE Alu -6 306 1 2730 302 52 55 chr1 17632729 17633475 -264560189 - PRIMA41-int LTR ERV1 -2938 4818 4072 1658 86 0 0 chr1 17633475 17633696 -264559968 - AluY SINE Alu -90 221 1 394 248 143 96 chr1 17633764 17633890 -264559774 + L1MEc LINE L1 1704 1823 -4573 1682 171 3 0 chr1 17633890 17634176 -264559488 + AluSx SINE Alu 1 287 -25 394 248 143 96 chr1 17634176 17634371 -264559293 + L1MEc LINE L1 1823 2040 -4356 477 177 105 57 chr1 17634588 17634712 -264558952 - FLAM_C SINE Alu -12 131 2 596 54 0 0 chr1 17634736 17634810 -264558854 - tRNA-Asn-AAC tRNA tRNA -3 74 1 1898 119 3 14 chr1 17635499 17635792 -264557872 + AluSx SINE Alu 1 290 -22 383 191 0 0 chr1 17635859 17635927 -264557737 + tRNA-His-CAC tRNA tRNA 6 73 -2 639 190 73 0 chr1 17636421 17636558 -264557106 - U1 snRNA snRNA -14 151 5 594 54 0 0 chr1 17637614 17637688 -264555976 - tRNA-Glu-GAG tRNA tRNA -1 74 1 375 287 30 24 chr1 17638181 17638345 -264555319 + L2 LINE L2 2351 2515 -799 322 206 51 120 chr1 17638426 17638601 -264555063 - MER20 DNA MER1_type -56 163 1 1173 178 33 21 chr1 17639484 17639725 -264553939 - MLT1A1 LTR MaLR 0 365 122 2517 102 8 0 chr1 17639902 17640254 -264553410 - THE1A LTR MaLR 0 355 1 547 282 147 38 chr1 17640339 17640836 -264552828 + L1M4 LINE L1 4697 5247 -899 1857 57 54 50 chr1 17642028 17642331 -264551333 + AluY SINE Alu 1 304 0 437 279 146 25 chr1 17642659 17642832 -264550832 + L1M4 LINE L1 4987 5198 -948 4654 188 19 14 chr1 17642832 17643747 -264549917 + MER49 LTR ERV1 5 923 0 437 279 146 25 chr1 17643747 17643813 -264549851 + L1M4 LINE L1 5198 5255 -891 8872 39 5 1 chr1 17643814 17645533 -264548131 + L1PA4 LINE L1 4293 6019 -136 372 22 0 0 chr1 17646230 17646275 -264547389 + (TG)n Simple_repeat Simple_repeat 2 46 0 248 157 24 36 chr1 17647367 17647450 -264546214 + GA-rich Low_complexity Low_complexity 2 83 0 261 0 0 0 chr1 17647856 17647885 -264545779 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 230 352 11 34 chr1 17649056 17649232 -264544432 + L1MC4 LINE L1 7460 7631 -411 532 314 45 48 chr1 17649243 17649685 -264543979 - L1MC4 LINE L1 -413 7629 7189 261 0 0 0 chr1 17650052 17650081 -264543583 + (TG)n Simple_repeat Simple_repeat 1 29 0 255 203 68 0 chr1 17651312 17651386 -264542278 - MLT2D LTR ERVL -70 445 367 514 313 21 10 chr1 17651411 17651603 -264542061 - MLT2D LTR ERVL -220 194 1 1059 267 26 8 chr1 17651606 17651995 -264541669 - L1M4 LINE L1 -892 5254 4859 1460 147 8 26 chr1 17652298 17652564 -264541100 + AluSq SINE Alu 50 310 -3 413 251 201 46 chr1 17652564 17652847 -264540817 + L1MEc LINE L1 983 1309 -5254 415 291 73 49 chr1 17652925 17653334 -264540330 + L1MEc LINE L1 1265 1683 -4701 * 1110 254 98 39 chr1 17653326 17653400 -264540264 + L1M4 LINE L1 4190 4258 -1888 488 68 14 0 chr1 17653400 17653473 -264540191 + (CA)n Simple_repeat Simple_repeat 2 75 0 1110 254 98 39 chr1 17653473 17653884 -264539780 + L1M4 LINE L1 4258 4703 -1443 1116 221 11 7 chr1 17653960 17654236 -264539428 - AluJo SINE Alu -9 303 27 2196 79 0 26 chr1 17654394 17654697 -264538967 + AluY SINE Alu 1 295 -16 191 88 29 0 chr1 17654725 17654759 -264538905 + (TA)n Simple_repeat Simple_repeat 2 36 0 227 222 0 0 chr1 17654763 17654826 -264538838 - L1MA9 LINE L1 -36 6276 6214 331 290 156 11 chr1 17655688 17655874 -264537790 + MIR SINE MIR 34 246 -16 255 369 53 5 chr1 17655947 17656153 -264537511 - L1MC/D LINE L1 -2019 5789 5574 246 192 110 0 chr1 17656529 17656602 -264537062 - HAL1 LINE L1 -146 2361 2281 220 271 0 29 chr1 17658006 17658076 -264535588 + CT-rich Low_complexity Low_complexity 2 69 0 384 125 125 0 chr1 17658989 17659053 -264534611 - tRNA-Gln-CAG tRNA tRNA -3 72 1 2079 161 44 3 chr1 17659842 17660208 -264533456 - LOR1b LTR ERV1 -2 459 79 481 132 13 0 chr1 17660209 17660285 -264533379 + AluJb SINE Alu 57 133 -179 2772 206 32 34 chr1 17660302 17660918 -264532746 + L1P LINE L1 11 625 -5521 287 227 13 13 chr1 17660953 17661028 -264532636 - MER4B-int LTR ERV1 -918 5840 5766 801 206 12 0 chr1 17661046 17661211 -264532453 + AluJb SINE Alu 140 306 -6 2396 55 3 7 chr1 17661297 17661607 -264532057 + AluY SINE Alu 1 309 -2 268 284 52 26 chr1 17661886 17662002 -264531662 + Charlie4 DNA MER1_type 1839 1957 -4 2012 103 0 14 chr1 17662853 17663134 -264530530 + AluSg SINE Alu 1 277 -33 180 0 0 0 chr1 17663136 17663156 -264530508 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 435 258 108 38 chr1 17663819 17664005 -264529659 - MIR SINE MIR -14 248 50 598 260 180 10 chr1 17664280 17664480 -264529184 - MIR SINE MIR -26 236 3 261 0 0 0 chr1 17664672 17664701 -264528963 + (TTA)n Simple_repeat Simple_repeat 1 29 0 195 189 158 74 chr1 17665261 17665356 -264528308 + L2 LINE L2 3169 3271 -1 616 187 57 0 chr1 17665384 17665507 -264528157 - MER3 DNA MER1_type 0 209 80 244 275 76 46 chr1 17665889 17666020 -264527644 + L2 LINE L2 3123 3257 -15 931 148 7 0 chr1 17667272 17667444 -264526220 - AluJb SINE Alu 0 306 134 2288 69 0 23 chr1 17667444 17667749 -264525915 - AluY SINE Alu -13 298 1 554 222 6 99 chr1 17868560 17868722 -264324942 - AluJo SINE Alu -115 197 51 2272 241 144 24 chr1 17868733 17869505 -264324159 + L2 LINE L2 1979 2890 -423 2187 107 39 39 chr1 17869505 17869869 -264323795 + THE1B LTR MaLR 1 364 0 2272 241 144 24 chr1 17869869 17870059 -264323605 + L2 LINE L2 2890 3056 -257 263 259 0 0 chr1 17870095 17870153 -264323511 - L1MC3 LINE L1 -506 7279 7222 1853 139 23 116 chr1 17870156 17870426 -264323238 + MLT1B LTR MaLR 1 218 -172 2148 113 29 45 chr1 17870426 17870807 -264322857 + THE1C LTR MaLR 1 375 0 1853 139 23 116 chr1 17870807 17870966 -264322698 + MLT1B LTR MaLR 218 390 0 383 232 82 57 chr1 17871027 17871221 -264322443 + L2 LINE L2 3114 3312 -1 698 310 48 59 chr1 17871231 17871343 -264322321 + L1M4 LINE L1 2135 2247 -3899 2295 97 7 7 chr1 17871343 17871632 -264322032 + AluSx SINE Alu 1 289 -23 426 69 0 0 chr1 17871633 17871691 -264321973 + (TA)n Simple_repeat Simple_repeat 1 58 0 698 310 48 59 chr1 17871691 17871934 -264321730 + L1M4 LINE L1 2246 2488 -3658 8998 206 76 35 chr1 17871934 17875484 -264318180 + L1MDa LINE L1 189 3888 -2652 3162 98 2 22 chr1 17875518 17876006 -264317658 - L1PB1 LINE L1 0 6151 5674 2429 149 19 3 chr1 17876011 17876655 -264317009 + L1PB1 LINE L1 5005 5658 -493 509 254 39 22 chr1 17876651 17876832 -264316832 + L1MDa LINE L1 3877 4060 -2480 * 759 294 87 25 chr1 17876826 17877434 -264316230 + L1M4 LINE L1 2473 3118 -3028 430 202 48 24 chr1 17877439 17877563 -264316101 + L1M4 LINE L1 3154 3280 -2866 1646 170 46 20 chr1 17877911 17878319 -264315345 - L1M4 LINE L1 -608 5576 5165 2280 88 0 0 chr1 17878319 17878625 -264315039 - AluY SINE Alu 0 306 1 1646 170 46 20 chr1 17878625 17878678 -264314986 - L1M4 LINE L1 -1019 5165 5115 504 221 115 8 chr1 17878891 17879013 -264314651 + MER63A DNA MER1_type 50 184 -26 301 275 22 0 chr1 17879388 17879479 -264314185 - MIR SINE MIR -82 126 34 258 308 106 40 chr1 17879800 17880027 -264313637 + MIR SINE MIR 7 248 -14 2071 108 0 0 chr1 17880284 17880544 -264313120 + AluSq SINE Alu 1 260 -53 216 0 0 0 chr1 17880591 17880615 -264313049 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 421 287 0 0 chr1 17880762 17880877 -264312787 + MIR3 SINE MIR 86 200 -8 294 220 68 0 chr1 17881197 17881298 -264312366 + MIR SINE MIR 31 149 -59 604 251 82 11 chr1 17882939 17883122 -264310542 + MER91A DNA MER1_type 1 196 0 1932 161 0 13 chr1 17883361 17883677 -264309987 + AluJb SINE Alu 1 312 0 2444 217 11 4 chr1 17883831 17884351 -264309313 - L1ME3 LINE L1 -24 6138 5615 1979 155 53 0 chr1 17884352 17884694 -264308970 - THE1C LTR MaLR -1 374 15 1198 208 26 55 chr1 17884696 17884989 -264308675 - L1ME3 LINE L1 -541 5621 5340 2018 159 0 10 chr1 17884989 17885290 -264308374 - AluSx SINE Alu -13 299 2 1198 208 26 55 chr1 17885290 17885375 -264308289 - L1ME3 LINE L1 -822 5340 5254 190 336 50 57 chr1 17885426 17885566 -264308098 - L2 LINE L2 0 3272 3134 1358 137 11 95 chr1 17886667 17886814 -264306850 + LTR51 LTR ERV1 5 163 -508 1992 107 54 18 chr1 17886814 17887094 -264306570 + AluSx SINE Alu 1 290 -22 2335 93 0 7 chr1 17887102 17887404 -264306260 + AluY SINE Alu 1 300 -11 1358 137 11 95 chr1 17887404 17887531 -264306133 + LTR51 LTR ERV1 170 264 -407 245 107 0 54 chr1 17887534 17887769 -264305895 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1991 154 6 6 chr1 17887769 17888081 -264305583 - AluJb SINE Alu 0 547 1 1763 191 21 67 chr1 17888082 17888516 -264305148 + LTR51 LTR ERV1 258 671 0 352 270 17 9 chr1 17889760 17889875 -264303789 + MIR SINE MIR 24 139 -69 265 284 0 12 chr1 17889901 17889982 -264303682 + MIR SINE MIR 85 164 -98 428 262 5 48 chr1 17890208 17890395 -264303269 + CT-rich Low_complexity Low_complexity 2 180 0 205 185 62 31 chr1 17890378 17890443 -264303221 + (TCTG)n Simple_repeat Simple_repeat 2 68 0 * 188 195 0 0 chr1 17891239 17891280 -264302384 + MIR SINE MIR 81 121 -87 597 328 39 19 chr1 17891946 17892202 -264301462 + MIR SINE MIR 2 262 0 200 269 0 0 chr1 17892349 17892401 -264301263 + L2 LINE L2 3262 3313 0 406 300 95 24 chr1 17893719 17893798 -264299866 - MIR SINE MIR -10 252 180 2098 140 0 0 chr1 17893798 17894108 -264299556 + AluSx SINE Alu 1 310 0 406 300 95 24 chr1 17894108 17894236 -264299428 - MIR SINE MIR -82 180 28 195 265 159 62 chr1 17894249 17894607 -264299057 - L2 LINE L2 -558 2756 2364 232 286 18 0 chr1 17895110 17895166 -264298498 + L2 LINE L2 3256 3312 -1 * 413 297 39 13 chr1 17895163 17895318 -264298346 + MIR3 SINE MIR 43 201 -7 1112 215 31 78 chr1 17896004 17896294 -264297370 - PABL_B LTR ERV1 0 667 365 1877 177 3 0 chr1 17896294 17896593 -264297071 - AluSx SINE Alu -11 301 2 1112 215 31 78 chr1 17896593 17896783 -264296881 - PABL_B LTR ERV1 -302 365 53 678 262 126 15 chr1 17897064 17897335 -264296329 + L2 LINE L2 3004 3304 -9 350 313 27 0 chr1 17897959 17898071 -264295593 + MIR SINE MIR 33 147 -115 261 292 28 0 chr1 17898082 17898154 -264295510 + CT-rich Low_complexity Low_complexity 1 74 0 539 207 0 0 chr1 17898162 17898278 -264295386 - AluSg/x SINE Alu -12 298 183 1798 115 0 8 chr1 17898378 17898621 -264295043 - AluY SINE Alu -70 241 1 1946 108 4 22 chr1 17898940 17899112 -264294552 - AluSx SINE Alu -9 303 136 2357 93 0 3 chr1 17899112 17899403 -264294261 - AluSc SINE Alu -19 290 1 1946 108 4 22 chr1 17899403 17899507 -264294157 - AluSx SINE Alu -176 136 32 364 247 164 41 chr1 17899513 17899659 -264294005 + MER5B DNA MER1_type 15 178 0 509 315 28 0 chr1 17899683 17899864 -264293800 + MIR SINE MIR 45 230 -32 454 275 18 54 chr1 17900356 17900523 -264293141 - MIR SINE MIR 0 262 102 1461 209 63 50 chr1 17901043 17901441 -264292223 + MLT1D LTR MaLR 1 403 -102 * 2212 151 41 44 chr1 17901437 17901721 -264291943 + LTR32 LTR ERVL 10 294 -177 2335 95 0 0 chr1 17901721 17902015 -264291649 - AluSg SINE Alu -16 294 1 2212 151 41 44 chr1 17902015 17902166 -264291498 + LTR32 LTR ERVL 294 444 -27 1108 154 0 0 chr1 17902168 17902324 -264291340 - FRAM SINE Alu -22 154 1 642 176 0 8 chr1 17902342 17902461 -264291203 + MLT1D LTR MaLR 388 505 0 227 337 0 0 chr1 17905289 17905372 -264288292 + GA-rich Low_complexity Low_complexity 1 83 0 458 235 112 18 chr1 17905735 17905905 -264287759 + MER5A DNA MER1_type 1 186 -3 2379 91 3 25 chr1 17905905 17906224 -264287440 + AluSx SINE Alu 1 312 0 212 245 19 0 chr1 17906248 17906301 -264287363 + L2 LINE L2 3005 3058 -214 679 224 45 30 chr1 17907894 17908095 -264285569 - MIR SINE MIR -13 249 46 281 317 41 3 chr1 17908190 17908395 -264285269 + MIR SINE MIR 38 252 -10 1935 159 24 3 chr1 17909131 17909426 -264284238 + AluJb SINE Alu 1 301 -11 2197 262 128 22 chr1 17909431 17910164 -264283500 - MER45C DNA AcHobo -678 903 75 2548 60 3 3 chr1 17910164 17910466 -264283198 + AluSp SINE Alu 1 302 -11 2197 262 128 22 chr1 17910466 17910542 -264283122 - MER45C DNA AcHobo -1506 75 8 2307 113 0 6 chr1 17911295 17911606 -264282058 - AluSx SINE Alu -3 309 1 2474 78 3 3 chr1 17912191 17912498 -264281166 - AluY SINE Alu 0 311 5 391 229 229 0 chr1 17912553 17912675 -264280989 + MIR3 SINE MIR 37 186 -22 436 261 121 24 chr1 17913718 17913883 -264279781 - MIR SINE MIR -80 182 2 992 138 32 27 chr1 17913896 17914084 -264279580 + MER53 DNA DNA 1 189 0 473 278 15 0 chr1 17914720 17914853 -264278811 - MIR SINE MIR -36 226 92 1907 126 39 3 chr1 17914855 17915141 -264278523 + AluJo SINE Alu 3 298 -14 27 0 0 0 chr1 17915144 17915171 -264278493 + AT_rich Low_complexity Low_complexity 1 27 0 256 255 10 59 chr1 17915171 17915273 -264278391 - MIR SINE MIR -150 112 16 216 298 19 58 chr1 17915636 17915740 -264277924 + L2 LINE L2 3000 3099 -173 1206 145 77 14 chr1 17915793 17916000 -264277664 - AluJb SINE Alu -6 306 87 348 239 14 6 chr1 17916050 17916185 -264277479 - MER20 DNA MER1_type 0 219 1 215 217 98 43 chr1 17916197 17916289 -264277375 + L2 LINE L2 3168 3264 -8 189 190 0 103 chr1 17916792 17916850 -264276814 + MIR SINE MIR 19 70 -138 1340 170 0 18 chr1 17916983 17917212 -264276452 - AluJb SINE Alu -9 303 79 1875 150 3 6 chr1 17917739 17918052 -264275612 + AluSx SINE Alu 1 312 0 228 234 0 62 chr1 17918118 17918182 -264275482 - L2 LINE L2 0 3313 3254 305 335 76 0 chr1 17918212 17918397 -264275267 + L1MC4a LINE L1 5705 5903 -1905 1831 144 3 7 chr1 17918474 17918772 -264274892 + AluJb SINE Alu 1 297 -15 779 141 127 1 chr1 17918774 17918933 -264274731 + L1MB5 LINE L1 5821 5979 -195 1802 102 72 8 chr1 17919183 17919496 -264274168 - AluJb SINE Alu 0 330 1 564 128 0 0 chr1 17919498 17919584 -264274080 - AluS SINE Alu -2 308 223 1689 124 39 16 chr1 17919584 17919714 -264273950 - AluSx SINE Alu -49 263 138 1831 107 68 7 chr1 17919714 17919994 -264273670 - AluY SINE Alu -14 297 1 1689 124 39 16 chr1 17919994 17920120 -264273544 - AluSx SINE Alu -174 138 1 248 338 75 23 chr1 17920296 17920429 -264273235 + MIR SINE MIR 4 143 -119 244 239 0 0 chr1 17921133 17921179 -264272485 - MER91 DNA MER1_type -149 47 2 342 303 264 0 chr1 17921617 17921772 -264271892 - MER91A DNA MER1_type 0 196 1 191 341 12 0 chr1 17922076 17922158 -264271506 - MIR SINE MIR -115 147 65 207 349 0 0 chr1 17923465 17923528 -264270136 + MIR SINE MIR 90 152 -110 205 300 50 0 chr1 17923676 17923756 -264269908 - MIR SINE MIR -173 89 6 1051 244 123 27 chr1 17924722 17925271 -264268393 + L2 LINE L2 2528 3115 -198 846 116 0 0 chr1 17925273 17925394 -264268270 - AluSg/x SINE Alu -9 301 181 694 183 7 44 chr1 17925412 17925549 -264268115 + L2 LINE L2 3182 3313 0 548 179 11 0 chr1 17926188 17926283 -264267381 + L2 LINE L2 3215 3310 -3 1367 300 220 24 chr1 17926612 17928351 -264265313 + L2 LINE L2 28 2107 -1207 2928 194 75 90 chr1 17928363 17929270 -264264394 + MER63C DNA MER1_type 3 895 -35 1751 197 35 24 chr1 17929270 17929641 -264264023 + ERVL LTR ERVL 1847 2221 -3543 318 108 40 27 chr1 17929683 17929757 -264263907 + C-rich Low_complexity Low_complexity 3 77 0 2235 104 3 0 chr1 17929867 17930175 -264263489 - AluSx SINE Alu -3 309 1 819 259 106 53 chr1 17930175 17930573 -264263091 + L2 LINE L2 2320 2738 -576 189 357 0 0 chr1 17930953 17931023 -264262641 + L2 LINE L2 3185 3254 -18 254 362 9 0 chr1 17931030 17931135 -264262529 - MIR SINE MIR -129 133 28 360 0 0 0 chr1 17931345 17931385 -264262279 + (ATG)n Simple_repeat Simple_repeat 3 42 0 180 262 0 0 chr1 17932440 17932482 -264261182 + L2 LINE L2 3002 3043 -229 241 283 87 11 chr1 17932521 17932613 -264261051 + MIR SINE MIR 99 197 -65 229 326 22 0 chr1 17933041 17933130 -264260534 - MIR SINE MIR -3 259 169 2030 156 43 54 chr1 17933175 17933598 -264260066 - MER83 LTR ERV1 -27 421 4 297 189 68 27 chr1 17933600 17933674 -264259990 - MIR SINE MIR -112 150 74 321 319 49 14 chr1 17934039 17934183 -264259481 - L3 LINE CR1 -101 1476 1328 208 392 59 0 chr1 17934761 17934863 -264258801 - L2 LINE L2 -10 3262 3155 267 280 131 54 chr1 17934878 17935046 -264258618 - MIR SINE MIR -56 206 26 812 248 39 5 chr1 17935115 17935321 -264258343 + MIR SINE MIR 10 222 -40 1568 104 207 4 chr1 17935325 17935576 -264258088 + AluSx SINE Alu 1 302 0 975 158 6 12 chr1 17936452 17936644 -264257020 + AluJo SINE Alu 122 312 0 1766 144 50 13 chr1 17936650 17936948 -264256716 + AluSx SINE Alu 1 309 -3 258 184 42 0 chr1 17937005 17937078 -264256586 - MIR SINE MIR -78 130 54 264 214 51 41 chr1 17939371 17939469 -264254195 - MIR SINE MIR -52 210 112 402 196 82 0 chr1 17939588 17939685 -264253979 - MIR SINE MIR -72 136 32 721 139 88 119 chr1 17939836 17939883 -264253781 - MER53 DNA DNA -1 188 141 2115 111 20 0 chr1 17939883 17940189 -264253475 + AluSx SINE Alu 1 312 0 721 139 88 119 chr1 17940189 17940335 -264253329 - MER53 DNA DNA -48 141 1 287 274 0 53 chr1 17940739 17940834 -264252830 - MIR3 SINE MIR -5 203 114 245 227 0 13 chr1 17940920 17940995 -264252669 + (CAT)n Simple_repeat Simple_repeat 3 76 0 531 279 56 17 chr1 17942057 17942236 -264251428 + MIR SINE MIR 63 248 -14 217 272 247 10 chr1 17942247 17942348 -264251316 - MIR SINE MIR -62 146 37 538 320 0 22 chr1 17942574 17942755 -264250909 - L2 LINE L2 0 3313 3137 1056 276 35 0 chr1 17942760 17943079 -264250585 - L2 LINE L2 -688 2626 2297 222 37 0 0 chr1 17943273 17943300 -264250364 + (GA)n Simple_repeat Simple_repeat 2 28 0 531 132 0 0 chr1 17943740 17943831 -264249833 + (TGGA)n Simple_repeat Simple_repeat 4 94 0 315 146 0 0 chr1 17943893 17943948 -264249716 + (ATG)n Simple_repeat Simple_repeat 1 55 0 335 281 42 0 chr1 17943950 17944046 -264249618 - MIR SINE MIR -10 252 153 2146 115 3 0 chr1 17944165 17944461 -264249203 + AluSg SINE Alu 1 297 -13 2107 125 0 0 chr1 17944541 17944846 -264248818 + AluY SINE Alu 1 305 -6 409 286 226 18 chr1 17944896 17945113 -264248551 + L1MC5 LINE L1 7651 7912 -49 186 308 51 43 chr1 17945770 17945887 -264247777 + MIR SINE MIR 16 133 -75 271 233 233 0 chr1 17946123 17946239 -264247425 + MIR SINE MIR 112 254 -8 210 257 194 7 chr1 17946928 17947072 -264246592 + L2 LINE L2 2921 3091 -181 1104 222 68 0 chr1 17947150 17947357 -264246307 + MER58A DNA MER1_type 4 224 0 195 241 0 56 chr1 17947874 17947928 -264245736 + L2 LINE L2 3010 3060 -212 234 310 0 14 chr1 17948039 17948110 -264245554 + MIR SINE MIR 23 92 -170 1903 134 20 17 chr1 17948320 17948619 -264245045 - AluJb SINE Alu -12 300 1 304 311 41 0 chr1 17948658 17948780 -264244884 + L1ME3A LINE L1 5836 5962 -208 264 245 11 64 chr1 17948835 17948929 -264244735 + L1ME3A LINE L1 5969 6057 -113 234 0 0 0 chr1 17948984 17949010 -264244654 + (TG)n Simple_repeat Simple_repeat 2 27 0 569 295 128 16 chr1 17949117 17949368 -264244296 + L1MC/D LINE L1 5388 5666 -2142 816 252 80 37 chr1 17949466 17950128 -264243536 - L1M4 LINE L1 -748 5398 4766 2045 108 4 0 chr1 17950128 17950405 -264243259 + AluSp SINE Alu 1 278 -35 207 0 0 0 chr1 17950408 17950431 -264243233 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 816 252 80 37 chr1 17950431 17950472 -264243192 - L1M4 LINE L1 -1381 4765 4578 * 1169 223 16 44 chr1 17950469 17950833 -264242831 - L1MCa LINE L1 -5182 1244 891 454 318 47 7 chr1 17951403 17951551 -264242113 + MIR3 SINE MIR 40 193 -15 462 260 90 67 chr1 17951559 17951782 -264241882 + MIR SINE MIR 35 262 0 811 276 29 34 chr1 17951817 17952056 -264241608 + MIR SINE MIR 15 252 -10 249 309 49 12 chr1 17952553 17952634 -264241030 + MIR SINE MIR 62 145 -63 417 251 131 50 chr1 17952695 17952894 -264240770 + MIR SINE MIR 34 248 -14 217 200 60 0 chr1 17953182 17953232 -264240432 - MIR3 SINE MIR -41 167 115 513 235 38 49 chr1 17953310 17953493 -264240171 - MIR SINE MIR -80 182 2 187 345 0 0 chr1 17953820 17953878 -264239786 + L2 LINE L2 3007 3064 -208 1939 98 0 88 chr1 17953943 17954271 -264239393 + AluSx SINE Alu 1 299 -13 335 301 179 0 chr1 17954571 17954767 -264238897 - MIR SINE MIR -18 244 14 642 199 243 24 chr1 17955155 17955361 -264238303 - MIR SINE MIR 0 262 12 408 281 72 0 chr1 17955432 17955571 -264238093 - MIR SINE MIR -37 225 77 923 191 38 6 chr1 17955807 17955990 -264237674 + MER53 DNA DNA 1 189 0 213 324 0 0 chr1 17956079 17956190 -264237474 + GA-rich Low_complexity Low_complexity 2 112 0 2201 99 16 0 chr1 17956282 17956586 -264237078 - AluSx SINE Alu -3 309 1 191 172 109 47 chr1 17956761 17956825 -264236839 - L2 LINE L2 -35 3237 3170 349 328 21 52 chr1 17956931 17957123 -264236541 + MIR SINE MIR 33 218 -44 451 314 21 0 chr1 17957396 17957536 -264236128 + MIR SINE MIR 7 149 -113 282 93 93 0 chr1 17957592 17957646 -264236018 - MIR SINE MIR -61 147 89 423 261 27 0 chr1 17958057 17958168 -264235496 + MER81 DNA DNA 1 114 0 185 297 176 0 chr1 17958211 17958285 -264235379 + MER5A DNA MER1_type 101 187 -2 2261 77 7 0 chr1 17958325 17958623 -264235041 + AluSp SINE Alu 1 300 -13 556 217 26 0 chr1 17958765 17958880 -264234784 - MIR SINE MIR -111 151 34 407 295 16 0 chr1 17959437 17959559 -264234105 - MIR3 SINE MIR -49 159 36 535 291 41 6 chr1 17959617 17959789 -264233875 + MER5B DNA MER1_type 1 178 0 535 250 9 0 chr1 17960494 17960606 -264233058 + MIR SINE MIR 37 149 -59 1808 145 0 3 chr1 17960888 17961170 -264232494 + AluJb SINE Alu 1 281 -31 221 277 60 12 chr1 17961589 17961672 -264231992 + L2 LINE L2 2988 3074 -198 781 240 68 18 chr1 17961901 17962122 -264231542 + MIR SINE MIR 31 262 0 447 241 9 0 chr1 17962113 17962221 -264231443 - MIR SINE MIR -103 159 51 * 364 348 30 7 chr1 17962279 17962414 -264231250 - L3 LINE CR1 -6 1571 1434 930 178 69 25 chr1 17963144 17963346 -264230318 + MER20 DNA MER1_type 6 216 -3 828 200 19 117 chr1 17963665 17963930 -264229734 + MIR SINE MIR 3 241 -21 206 262 85 106 chr1 17964858 17964943 -264228721 + MER5A DNA MER1_type 50 132 -57 2479 68 6 0 chr1 17964943 17965254 -264228410 - AluSp SINE Alu 0 313 1 206 262 85 106 chr1 17965254 17965309 -264228355 + MER5A DNA MER1_type 132 187 -2 412 229 33 66 chr1 17965325 17965396 -264228268 + MIR SINE MIR 26 93 -169 2418 73 0 0 chr1 17965396 17965698 -264227966 - AluY SINE Alu -9 302 1 412 229 33 66 chr1 17965698 17965748 -264227916 + MIR SINE MIR 93 143 -119 368 291 15 37 chr1 17965973 17966107 -264227557 + MIR SINE MIR 20 150 -112 1852 158 0 11 chr1 17966858 17967176 -264226488 + AluJo SINE Alu 1 315 0 454 243 29 73 chr1 17969929 17970065 -264223599 - MER91B DNA MER1_type -60 130 1 284 365 56 9 chr1 17970137 17970244 -264223420 - MIR SINE MIR -135 127 16 530 289 18 18 chr1 17970817 17970983 -264222681 + MIR3 SINE MIR 36 201 -7 837 218 96 5 chr1 17971142 17971330 -264222334 - MER3 DNA MER1_type -4 205 1 868 199 147 11 chr1 17971340 17971531 -264222133 + MER20 DNA MER1_type 3 219 0 224 133 0 158 chr1 17971724 17971920 -264221744 + (CATTC)n Simple_repeat Simple_repeat 2 166 0 488 190 219 0 chr1 17972417 17972554 -264221110 - MER20 DNA MER1_type -52 167 1 578 323 124 9 chr1 17972872 17973098 -264220566 - MIR SINE MIR -10 252 1 225 374 43 17 chr1 17973453 17973568 -264220096 + L2 LINE L2 3092 3209 -63 515 286 104 0 chr1 17974004 17974196 -264219468 - MIR SINE MIR -4 258 47 371 246 1 0 chr1 17974390 17974481 -264219183 + MIR SINE MIR 59 149 -68 322 353 16 27 chr1 17974934 17975121 -264218543 + L2 LINE L2 2839 3023 -249 2079 93 29 4 chr1 17975121 17975425 -264218239 + AluSx SINE Alu 1 311 0 846 224 82 18 chr1 17975562 17975781 -264217883 + MIR SINE MIR 30 262 0 250 348 62 9 chr1 17976328 17976440 -264217224 - MIR SINE MIR -18 244 127 446 292 41 0 chr1 17976454 17976625 -264217039 + L2 LINE L2 2828 3005 -308 1650 173 26 26 chr1 17976625 17976990 -264216674 - AluJb SINE Alu 0 365 1 574 248 110 0 chr1 17977048 17977193 -264216471 - MIR SINE MIR -7 255 95 195 322 103 0 chr1 17977384 17977471 -264216193 + MIR SINE MIR 42 137 -71 217 330 0 19 chr1 17977789 17977895 -264215769 + SUBTEL_sa Satellite Satellite 5 108 -66 222 37 0 0 chr1 17978154 17978181 -264215483 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 385 165 0 18 chr1 17978295 17978404 -264215260 + CT-rich Low_complexity Low_complexity 1 107 0 1731 167 0 0 chr1 17978405 17978681 -264214983 - AluSx SINE Alu 0 312 37 313 311 89 37 chr1 17978763 17978898 -264214766 + L2 LINE L2 3172 3313 0 564 294 6 19 chr1 17978910 17979070 -264214594 + MIR SINE MIR 95 252 -10 246 284 15 0 chr1 17979197 17979264 -264214400 - MIR SINE MIR -103 159 92 331 143 156 0 chr1 17979275 17979352 -264214312 + L2 LINE L2 3225 3313 0 236 157 0 171 chr1 17979322 17979392 -264214272 - L2 LINE L2 -7 3306 3249 * 392 318 0 19 chr1 17979375 17979482 -264214182 - MIR SINE MIR -138 124 20 291 241 0 35 chr1 17980257 17980344 -264213320 - Charlie8 DNA MER1_type -2257 160 77 570 252 12 60 chr1 17980899 17981149 -264212515 + L1M4 LINE L1 2790 3027 -3119 884 179 6 0 chr1 17981151 17981307 -264212357 + FRAM SINE Alu 1 156 -20 2139 95 0 29 chr1 17981310 17981616 -264212048 + AluSg SINE Alu 1 297 -13 653 155 57 17 chr1 17981644 17981911 -264211753 + L1PA5 LINE L1 3001 6152 -3 765 317 17 4 chr1 17982163 17982393 -264211271 + MIR SINE MIR 3 235 -27 259 186 0 0 chr1 17982435 17982478 -264211186 + L2 LINE L2 3257 3299 -14 360 286 86 64 chr1 17983545 17983765 -264209899 - L2 LINE L2 -38 3234 3010 200 194 0 0 chr1 17984315 17984351 -264209313 + (CAGGG)n Simple_repeat Simple_repeat 1 36 0 463 309 67 11 chr1 17985012 17985190 -264208474 + MIR SINE MIR 31 218 -44 320 188 174 0 chr1 17985190 17985259 -264208405 + L1M4 LINE L1 5726 5806 -368 1794 177 7 0 chr1 17985395 17985694 -264207970 - AluJb SINE Alu -11 301 1 359 286 30 126 chr1 17985703 17985934 -264207730 - L1ME LINE L1 -374 5788 5580 697 253 38 105 chr1 17985963 17986355 -264207309 - MLT1J1 LTR MaLR -18 428 63 792 284 27 18 chr1 17987014 17987236 -264206428 + MIR SINE MIR 5 228 -34 2116 114 0 3 chr1 17987437 17987736 -264205928 + AluSc SINE Alu 3 300 -9 268 192 131 30 chr1 18037891 18037990 -264155674 + MLT1K LTR MaLR 458 566 -22 2206 149 25 27 chr1 18038012 18038164 -264155500 + MSTA LTR MaLR 27 178 -250 2378 117 0 0 chr1 18038164 18038473 -264155191 - AluSc SINE Alu 0 309 1 2206 149 25 27 chr1 18038473 18038723 -264154941 + MSTA LTR MaLR 178 428 0 2198 105 72 43 chr1 18038807 18039315 -264154349 - MER51A LTR ERV1 0 634 1 428 274 29 49 chr1 18039335 18039539 -264154125 + LTR4 LTR ERV1 1 200 -396 917 239 18 21 chr1 18039728 18040008 -264153656 + LTR4 LTR ERV1 318 596 0 244 333 76 9 chr1 18040504 18040609 -264153055 + MIR SINE MIR 2 113 -149 1713 191 60 30 chr1 18040609 18041039 -264152625 + MLT1D LTR MaLR 1 443 -62 934 209 120 76 chr1 18041044 18041477 -264152187 - LTR56 LTR ERV1 0 445 11 1684 147 18 42 chr1 18041477 18041763 -264151901 + AluJo SINE Alu 1 279 -33 2457 127 91 8 chr1 18041763 18042157 -264151507 - MSTA LTR MaLR -1 427 1 7829 160 124 2 chr1 18042162 18043626 -264150038 - MLT1J1-int LTR MaLR -6 1635 5 1398 176 111 67 chr1 18043626 18044057 -264149607 + LTR7 LTR ERV1 1 450 0 2866 106 7 58 chr1 18044066 18044517 -264149147 - MSTA LTR MaLR 0 428 1 2259 108 0 22 chr1 18044566 18044880 -264148784 + AluY SINE Alu 1 307 -4 282 179 45 0 chr1 18044893 18044960 -264148704 + MLT1D LTR MaLR 436 505 0 609 63 13 0 chr1 18045189 18045268 -264148396 + MADE1 DNA Mariner 1 80 0 216 312 39 0 chr1 18045477 18045554 -264148110 + MIR SINE MIR 67 146 -116 280 252 58 24 chr1 18045666 18045776 -264147888 - MIR SINE MIR -75 133 25 268 264 27 55 chr1 18046199 18046309 -264147355 - MIR3 SINE MIR -24 184 78 186 203 153 17 chr1 18046402 18046461 -264147203 + L2 LINE L2 3206 3272 0 562 232 119 30 chr1 18046717 18046885 -264146779 - MIR SINE MIR -38 224 42 351 0 0 0 chr1 18046891 18046930 -264146734 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 254 286 78 13 chr1 18047256 18047333 -264146331 - L2 LINE L2 -4 3309 3228 243 311 0 0 chr1 18047440 18047514 -264146150 - MER117 DNA MER1_type -38 159 86 1517 165 4 0 chr1 18047528 18047764 -264145900 + AluJo SINE Alu 57 293 -19 532 273 68 117 chr1 18048230 18048615 -264145049 + L2 LINE L2 2897 3262 -10 2181 94 38 0 chr1 18049010 18049298 -264144366 + AluSc SINE Alu 11 309 0 1054 291 93 29 chr1 18049436 18050314 -264143350 - L2 LINE L2 -8 3305 2366 596 237 16 79 chr1 18050379 18050532 -264143132 - MER20 DNA MER1_type 0 219 58 189 0 0 0 chr1 18050532 18050553 -264143111 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 267 31 0 0 chr1 18050552 18050584 -264143080 + (GA)n Simple_repeat Simple_repeat 2 33 0 596 237 16 79 chr1 18050553 18050652 -264143012 - MER20 DNA MER1_type -161 58 1 544 220 34 0 chr1 18050652 18050770 -264142894 - MIR SINE MIR -55 207 86 354 300 33 67 chr1 18050763 18050817 -264142847 - L2 LINE L2 -946 2368 2314 * 1380 204 126 30 chr1 18050817 18051150 -264142514 + MLT1A1 LTR MaLR 1 365 0 354 300 33 67 chr1 18051150 18051305 -264142359 - L2 LINE L2 -1000 2314 2166 * 1237 246 145 0 chr1 18051302 18051729 -264141935 + L2 LINE L2 1564 2052 -1262 521 273 30 45 chr1 18051777 18052044 -264141620 + L1ME LINE L1 5344 5606 -515 452 126 25 118 chr1 18052075 18052194 -264141470 - L1MC4 LINE L1 -1 8041 7934 219 114 0 0 chr1 18052199 18052234 -264141430 + (TC)n Simple_repeat Simple_repeat 2 36 0 246 268 0 0 chr1 18052241 18052297 -264141367 + (TA)n Simple_repeat Simple_repeat 2 57 0 253 314 0 0 chr1 18052299 18052385 -264141279 + L1MC4 LINE L1 6616 6701 -1341 1480 205 87 5 chr1 18052397 18052787 -264140877 - L1MC4 LINE L1 -110 7932 7511 314 371 8 0 chr1 18052794 18052926 -264140738 + L2 LINE L2 2918 3050 -263 1733 195 48 75 chr1 18053024 18053422 -264140242 + Cheshire DNA MER1_type 66 473 -1947 2306 141 2 80 chr1 18053422 18053634 -264140030 - L1MB3 LINE L1 -10 6173 5946 1521 174 210 14 chr1 18053634 18054048 -264139616 - LTR54B LTR ERV1 -2 496 2 2306 141 2 80 chr1 18054048 18054202 -264139462 - L1MB3 LINE L1 -237 5946 5848 1906 123 0 18 chr1 18054202 18054479 -264139185 - AluSx SINE Alu -10 302 31 2306 141 2 80 chr1 18054479 18054572 -264139092 - L1MB3 LINE L1 -335 5848 5749 1733 195 48 75 chr1 18054572 18054695 -264138969 + Cheshire DNA MER1_type 473 573 -1847 309 222 0 0 chr1 18054693 18054756 -264138908 + Cheshire DNA MER1_type 2355 2417 -3 * 2795 114 2 66 chr1 18054977 18055434 -264138230 + MSTC LTR MaLR 1 428 0 2130 137 0 13 chr1 18055688 18056036 -264137628 - AluSx SINE Alu 0 312 1 180 247 34 124 chr1 18056197 18056286 -264137378 - L3 LINE CR1 -2 1575 1495 469 329 12 0 chr1 18056680 18056841 -264136823 + MIR SINE MIR 95 257 -5 299 222 0 16 chr1 18057217 18057280 -264136384 - MIR SINE MIR -3 259 198 663 203 26 59 chr1 18057303 18057440 -264136224 + MIR SINE MIR 7 140 -122 1449 277 102 24 chr1 18057440 18057942 -264135722 - MER34 LTR ERV1 -1 541 1 663 203 26 59 chr1 18057942 18057957 -264135707 + MIR SINE MIR 140 154 -108 263 258 15 0 chr1 18057957 18058023 -264135641 + MER116 DNA Mariner 1 67 -13 320 266 0 0 chr1 18058037 18058116 -264135548 + MIR SINE MIR 168 246 -16 442 252 0 10 chr1 18058147 18058250 -264135414 - MIR SINE MIR -113 149 48 2273 109 0 7 chr1 18058254 18058558 -264135106 + AluSx SINE Alu 1 302 -10 181 276 26 53 chr1 18059214 18059290 -264134374 + MIR SINE MIR 8 81 -181 363 262 19 0 chr1 18059301 18059408 -264134256 + MER34 LTR ERV1 19 127 -415 239 232 36 0 chr1 18059416 18059472 -264134192 + Tigger5 DNA MER2_type 1 58 -2265 362 167 14 0 chr1 18059482 18059554 -264134110 - Tigger5 DNA MER2_type -6 2317 2245 456 224 82 66 chr1 18059680 18059956 -264133708 + MER34C LTR ERV1 290 525 -17 384 149 0 40 chr1 18060011 18060085 -264133579 + MER34 LTR ERV1 19 89 -453 262 311 16 0 chr1 18060227 18060349 -264133315 + (TG)n Simple_repeat Simple_repeat 1 124 0 208 272 0 27 chr1 18060380 18060564 -264133100 + (TG)n Simple_repeat Simple_repeat 2 180 0 472 280 5 53 chr1 18060609 18060798 -264132866 + (TG)n Simple_repeat Simple_repeat 1 180 0 1064 213 132 67 chr1 18060958 18061311 -264132353 + LTR56 LTR ERV1 1 387 -58 2457 76 0 10 chr1 18061311 18061614 -264132050 + AluY SINE Alu 1 300 -11 1064 213 132 67 chr1 18061614 18061678 -264131986 + LTR56 LTR ERV1 387 445 0 411 135 54 0 chr1 18061619 18061693 -264131971 + LTR23 LTR ERV1 353 430 -7 360 340 85 0 chr1 18062356 18062497 -264131167 - L2 LINE L2 -2 3270 3118 550 219 185 0 chr1 18062509 18062655 -264131009 - MER53 DNA DNA -1 188 16 998 117 25 31 chr1 18062848 18063011 -264130653 - FRAM SINE Alu -5 171 10 932 197 77 12 chr1 18063198 18063470 -264130194 - MSTB LTR MaLR -116 312 1 3543 145 37 30 chr1 18063470 18063737 -264129927 - MSTB-int LTR MaLR 0 1651 1387 2029 79 0 25 chr1 18063737 18064014 -264129650 + AluSp SINE Alu 35 304 -9 3543 145 37 30 chr1 18064014 18064401 -264129263 - MSTB-int LTR MaLR -264 1387 993 2360 93 0 0 chr1 18064407 18064717 -264128947 - AluSx SINE Alu -2 310 1 636 184 37 0 chr1 18064780 18064889 -264128775 + MSTB1 LTR MaLR 320 432 0 1505 98 17 51 chr1 18065321 18065556 -264128108 - MER30 DNA MER1_type -1 229 3 2169 111 0 0 chr1 18065610 18065907 -264127757 + AluSx SINE Alu 1 297 -15 975 249 45 110 chr1 18066148 18066199 -264127465 - LTR24B LTR ERV1 -7 569 516 1861 135 27 3 chr1 18066199 18066496 -264127168 + AluJo SINE Alu 1 304 -8 975 249 45 110 chr1 18066496 18066954 -264126710 - LTR24B LTR ERV1 -60 516 93 29 0 0 0 chr1 18067089 18067118 -264126546 + AT_rich Low_complexity Low_complexity 1 29 0 2302 91 0 0 chr1 18067119 18067416 -264126248 - AluSx SINE Alu -15 297 1 1472 172 0 39 chr1 18067468 18067737 -264125927 - L1MB2 LINE L1 -2 6169 5910 1013 96 0 15 chr1 18067737 18067872 -264125792 + FLAM_C SINE Alu 1 133 0 1472 172 0 39 chr1 18067872 18067887 -264125777 - L1MB2 LINE L1 -261 5910 5896 1916 128 3 26 chr1 18067986 18068292 -264125372 - AluJb SINE Alu -13 299 1 2313 57 20 10 chr1 18068297 18068595 -264125069 - AluY SINE Alu -10 301 1 534 266 70 13 chr1 18068596 18068754 -264124910 - MIR SINE MIR -65 197 31 422 178 11 0 chr1 18068854 18068944 -264124720 + (TG)n Simple_repeat Simple_repeat 1 91 0 255 264 0 14 chr1 18069140 18069212 -264124452 + MIR SINE MIR 66 136 -72 2286 109 0 0 chr1 18069673 18069985 -264123679 + AluSx SINE Alu 1 312 0 396 203 88 92 chr1 18070009 18070105 -264123559 - MER33 DNA MER1_type -2283 302 207 1620 176 0 13 chr1 18070105 18070411 -264123253 - AluJo SINE Alu -10 302 1 396 203 88 92 chr1 18070411 18070531 -264123133 - MER33 DNA MER1_type -2378 207 87 2439 118 52 0 chr1 18070531 18070982 -264122682 + MER1A DNA MER1_type 1 529 0 260 221 195 0 chr1 18070982 18071057 -264122607 - MER33 DNA MER1_type -230 94 5 479 285 91 43 chr1 18071143 18071329 -264122335 + MIR SINE MIR 59 253 -9 2359 159 54 0 chr1 18071367 18071776 -264121888 + MLT2C2 LTR ERVL 2 480 -40 315 331 28 35 chr1 18072196 18072338 -264121326 + L2 LINE L2 2679 2819 -495 410 298 158 14 chr1 18072448 18072663 -264121001 - MIR SINE MIR -3 259 14 410 260 0 55 chr1 18072678 18072805 -264120859 + MIR SINE MIR 132 251 -11 261 280 154 32 chr1 18073455 18073643 -264120021 - MIR SINE MIR -12 250 42 405 285 124 59 chr1 18073730 18073916 -264119748 + MIR SINE MIR 65 262 0 2256 97 3 0 chr1 18074298 18074598 -264119066 + AluSp SINE Alu 1 301 -12 200 359 78 14 chr1 18075527 18075669 -264117995 + L2 LINE L2 2967 3117 -155 21 36 0 0 chr1 18075866 18075894 -264117770 + GC_rich Low_complexity Low_complexity 1 28 0 218 300 0 36 chr1 18076403 18076513 -264117151 + C-rich Low_complexity Low_complexity 2 107 0 185 250 36 18 chr1 18077401 18077457 -264116207 + MIR3 SINE MIR 114 170 -38 1193 179 49 11 chr1 18077949 18078234 -264115430 - MER33 DNA MER1_type -28 296 1 1016 148 133 15 chr1 18078242 18078438 -264115226 - MER20 DNA MER1_type 0 219 1 439 268 155 12 chr1 18078585 18078753 -264114911 - MIR SINE MIR -70 192 1 293 203 34 0 chr1 18079186 18079245 -264114419 + MIR SINE MIR 62 122 -86 866 271 41 22 chr1 18080432 18080746 -264112918 + L2 LINE L2 2825 3144 -169 575 184 73 124 chr1 18080754 18080979 -264112685 - MIR SINE MIR -2 260 38 321 26 0 0 chr1 18081067 18081105 -264112559 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 498 339 22 0 chr1 18081841 18082064 -264111600 + MIR SINE MIR 20 245 -17 348 24 0 0 chr1 18082089 18082130 -264111534 + (TAA)n Simple_repeat Simple_repeat 2 42 0 288 323 30 0 chr1 18082282 18082381 -264111283 - L2 LINE L2 -190 3082 2981 208 333 10 21 chr1 18082504 18082600 -264111064 - L2 LINE L2 -510 2804 2710 629 271 56 113 chr1 18083165 18083588 -264110076 + L2 LINE L2 2548 2994 -278 950 217 27 0 chr1 18083588 18083772 -264109892 + MER5A DNA MER1_type 1 189 0 629 271 56 113 chr1 18083772 18083985 -264109679 + L2 LINE L2 2994 3146 -126 2147 100 0 23 chr1 18083985 18084295 -264109369 + AluSx SINE Alu 3 305 -7 629 271 56 113 chr1 18084295 18084415 -264109249 + L2 LINE L2 3146 3271 -1 198 0 0 0 chr1 18084500 18084522 -264109142 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1933 151 0 3 chr1 18085587 18085892 -264107772 + AluSx SINE Alu 1 304 -8 2305 96 0 16 chr1 18085961 18086275 -264107389 - AluSx SINE Alu -3 309 1 333 258 62 10 chr1 18086357 18086454 -264107210 - MIR3 SINE MIR -49 159 58 436 278 48 16 chr1 18086465 18086652 -264107012 + MER113 DNA MER1_type? 2 194 -327 201 326 70 0 chr1 18086798 18086884 -264106780 - L2 LINE L2 -37 3235 3144 188 241 48 96 chr1 18087028 18087111 -264106553 - MIR3 SINE MIR -127 81 3 2246 94 0 0 chr1 18087129 18087428 -264106236 + AluSx SINE Alu 1 299 -13 384 253 72 98 chr1 18087764 18087958 -264105706 - MER5A DNA MER1_type 0 189 1 198 277 15 15 chr1 18088083 18088148 -264105516 + MER5A DNA MER1_type 125 189 0 865 248 82 32 chr1 18088360 18088645 -264105019 - MLT1B LTR MaLR -23 442 119 2242 97 7 0 chr1 18088645 18088944 -264104720 + AluSx SINE Alu 11 311 -1 865 248 82 32 chr1 18088944 18089070 -264104594 - MLT1B LTR MaLR -346 119 1 334 285 17 76 chr1 18089432 18089604 -264104060 - MER5A DNA MER1_type -2 187 26 1528 172 11 19 chr1 18089665 18089684 -264103980 - AluJb SINE Alu -19 293 275 2134 117 7 0 chr1 18089684 18089992 -264103672 + AluSp SINE Alu 1 310 -3 1528 172 11 19 chr1 18089992 18090239 -264103425 - AluJb SINE Alu -37 275 29 667 185 16 53 chr1 18090565 18090645 -264103019 - MER33 DNA MER1_type -2261 324 243 2519 46 3 0 chr1 18090645 18090951 -264102713 + AluY SINE Alu 1 307 -4 667 185 16 53 chr1 18090951 18091059 -264102605 - MER33 DNA MER1_type -2342 243 143 2088 73 3 31 chr1 18091059 18091377 -264102287 - AluY SINE Alu 0 310 1 1263 148 5 18 chr1 18091379 18091596 -264102068 - AluJo SINE Alu -15 297 84 425 208 57 9 chr1 18091598 18091704 -264101960 - MER33 DNA MER1_type -185 139 29 473 299 55 6 chr1 18092843 18093007 -264100657 - MIR3 SINE MIR -34 174 3 192 275 0 58 chr1 18093151 18093220 -264100444 - MIR3 SINE MIR -9 199 135 469 325 5 41 chr1 18093385 18093582 -264100082 - MIR SINE MIR -3 259 70 2280 97 0 0 chr1 18094418 18094717 -264098947 + AluSg SINE Alu 1 299 -11 2277 100 0 0 chr1 18094793 18095102 -264098562 + AluSx SINE Alu 1 309 -3 337 274 96 35 chr1 18095422 18095642 -264098022 + MIR SINE MIR 14 252 -10 436 268 24 16 chr1 18095779 18095906 -264097758 + MIR3 SINE MIR 49 176 -32 250 289 94 8 chr1 18097211 18097339 -264096325 + MIR3 SINE MIR 15 153 -55 183 354 46 0 chr1 18097704 18097769 -264095895 + MIR SINE MIR 108 175 -87 * 210 361 131 0 chr1 18097742 18097864 -264095800 + L2 LINE L2 3132 3269 -3 1146 152 37 5 chr1 18098326 18098517 -264095147 + MER20 DNA MER1_type 6 202 -17 460 230 9 0 chr1 18098556 18098663 -264095001 - MIR SINE MIR -62 146 40 266 347 41 16 chr1 18098995 18099116 -264094548 + MIR SINE MIR 23 146 -62 194 207 17 0 chr1 18099906 18099964 -264093700 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 769 287 68 53 chr1 18100673 18101264 -264092400 - L2 LINE L2 -1 3271 2667 2224 126 0 0 chr1 18101984 18102294 -264091370 + AluSg SINE Alu 1 310 0 243 211 60 75 chr1 18102302 18102399 -264091265 + L1ME4a LINE L1 5964 6060 -61 1938 167 0 0 chr1 18102399 18102711 -264090953 - AluJo SINE Alu 0 312 1 243 211 60 75 chr1 18102711 18102746 -264090918 + L1ME4a LINE L1 6060 6094 -27 817 250 162 26 chr1 18103485 18104004 -264089660 - L2 LINE L2 -17 3296 2689 333 0 0 0 chr1 18104759 18104796 -264088868 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 331 6 79 chr1 18105014 18105192 -264088472 + MIR SINE MIR 94 258 -4 473 247 0 0 chr1 18105355 18105448 -264088216 - MER81 DNA DNA -21 93 1 384 253 58 86 chr1 18106351 18106446 -264087218 - MIR SINE MIR -82 180 91 2331 92 0 0 chr1 18106446 18106751 -264086913 - AluSg SINE Alu -5 305 1 384 253 58 86 chr1 18106751 18106829 -264086835 - MIR SINE MIR -171 91 12 1854 133 0 23 chr1 18107572 18107907 -264085757 + AluSx SINE Alu 1 312 0 519 297 35 0 chr1 18108215 18108360 -264085304 + MIR SINE MIR 5 154 -108 269 241 46 46 chr1 18108425 18108512 -264085152 - MIR SINE MIR -63 145 59 262 285 42 145 chr1 18109641 18109855 -264083809 + MIR SINE MIR 19 210 -52 858 239 26 90 chr1 18110312 18110580 -264083084 + MIR SINE MIR 1 251 -11 467 299 224 5 chr1 18110806 18111020 -264082644 + MIR SINE MIR 2 262 0 238 213 0 0 chr1 18111089 18111136 -264082528 - L2 LINE L2 0 3313 3267 384 274 98 34 chr1 18111773 18111977 -264081687 + L1MC4a LINE L1 5656 5872 -1936 1181 140 23 0 chr1 18112020 18112191 -264081473 - AluSg/x SINE Alu -17 293 119 1959 145 3 10 chr1 18112205 18112502 -264081162 + AluJo SINE Alu 1 295 -17 272 238 16 82 chr1 18112903 18113025 -264080639 + MIR3 SINE MIR 88 201 -7 2133 118 38 3 chr1 18113259 18113547 -264080117 - AluSx SINE Alu -14 298 1 251 28 28 0 chr1 18113548 18113584 -264080080 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 668 280 55 38 chr1 18113912 18114148 -264079516 + MIR SINE MIR 23 262 0 275 173 0 0 chr1 18114682 18114734 -264078930 + MER117 DNA MER1_type 61 112 -85 792 288 26 34 chr1 18114813 18115179 -264078485 - MLT1I LTR MaLR -32 377 47 2157 118 14 0 chr1 18115287 18115584 -264078080 + AluSx SINE Alu 1 301 -11 277 286 0 8 chr1 18115669 18115788 -264077876 + (CA)n Simple_repeat Simple_repeat 1 118 0 1987 147 4 0 chr1 18116386 18116690 -264076974 + AluJb SINE Alu 5 309 0 1711 150 58 0 chr1 18116690 18116964 -264076700 + AluSx SINE Alu 1 290 -22 2386 74 3 0 chr1 18116967 18117277 -264076387 + AluSp SINE Alu 1 311 0 343 274 83 83 chr1 18117713 18117954 -264075710 - L2 LINE L2 0 3272 3032 * 1093 284 120 27 chr1 18117953 18118495 -264075169 - L2 LINE L2 -13 3300 2726 2039 120 23 23 chr1 18118501 18118810 -264074854 + AluSc SINE Alu 1 309 0 194 189 0 0 chr1 18118812 18118849 -264074815 - L2 LINE L2 -221 3051 3015 2240 116 0 0 chr1 18118867 18119160 -264074504 + AluSg SINE Alu 3 295 -15 935 203 10 0 chr1 18119860 18120057 -264073607 - MER33 DNA MER1_type -116 208 10 736 205 0 8 chr1 18120843 18120965 -264072699 + AluJo/FLAM SINE Alu 1 121 -191 2345 107 0 0 chr1 18120968 18121268 -264072396 - AluSq SINE Alu -13 300 1 1311 130 39 0 chr1 18121601 18121808 -264071856 - L1PA16 LINE L1 0 6166 5952 474 234 0 16 chr1 18121813 18121937 -264071727 - L1MB4 LINE L1 0 6180 6059 2494 70 0 0 chr1 18121944 18122242 -264071422 - AluY SINE Alu -13 298 1 1033 236 54 8 chr1 18123159 18123400 -264070264 + MIR SINE MIR 11 262 0 231 238 79 0 chr1 18124208 18124271 -264069393 + MIR SINE MIR 83 150 -112 871 159 0 7 chr1 18124274 18124412 -264069252 + FLAM_C SINE Alu 1 137 -6 2202 124 0 0 chr1 18124416 18124714 -264068950 + AluSx SINE Alu 1 298 -14 369 234 112 0 chr1 18124714 18124821 -264068843 + MIR SINE MIR 142 260 -2 187 250 23 0 chr1 18124888 18124932 -264068732 + L2 LINE L2 3210 3254 -18 246 272 99 0 chr1 18125378 18125459 -264068205 + MIR SINE MIR 43 131 -77 307 273 0 23 chr1 18125623 18125795 -264067869 + (CATA)n Simple_repeat Simple_repeat 2 169 0 320 272 19 19 chr1 18125809 18125912 -264067752 + (CATA)n Simple_repeat Simple_repeat 4 106 0 259 269 378 0 chr1 18125912 18126068 -264067596 + MIR SINE MIR 36 250 -12 378 293 8 32 chr1 18127633 18127756 -264065908 - L2 LINE L2 -1 3271 3152 198 103 0 0 chr1 18128146 18128175 -264065489 + (T)n Simple_repeat Simple_repeat 1 29 0 729 211 138 32 chr1 18128857 18128917 -264064747 - LTR16A1 LTR ERVL -11 446 394 1844 146 3 32 chr1 18128917 18129226 -264064438 + AluJo SINE Alu 1 300 -12 729 211 138 32 chr1 18129226 18129412 -264064252 - LTR16A1 LTR ERVL -63 394 174 2246 109 7 7 chr1 18129916 18130220 -264063444 - AluSc SINE Alu -1 308 5 1578 123 42 19 chr1 18130419 18130728 -264062936 - MER33 DNA MER1_type 0 324 9 2317 101 3 0 chr1 18131751 18132049 -264061615 + AluSx SINE Alu 1 299 -13 264 216 0 0 chr1 18132076 18132127 -264061537 + L2 LINE L2 3221 3271 -1 271 200 40 0 chr1 18132205 18132280 -264061384 - MER116 DNA Mariner -2 78 1 825 222 58 0 chr1 18132281 18132452 -264061212 - MIR SINE MIR -54 208 28 2236 135 0 0 chr1 18132498 18132810 -264060854 + AluSx SINE Alu 1 312 0 384 320 8 0 chr1 18133153 18133281 -264060383 + MER94 DNA DNA 5 133 -1 184 339 0 0 chr1 18133298 18133360 -264060304 - L2 LINE L2 -86 3186 3125 190 243 0 0 chr1 18133375 18133412 -264060252 + L2 LINE L2 3277 3313 0 267 335 79 13 chr1 18133810 18133962 -264059702 + L1MC4a LINE L1 5763 5924 -1884 2059 89 7 55 chr1 18133979 18134297 -264059367 + AluSg SINE Alu 1 304 0 470 314 63 22 chr1 18134662 18134860 -264058804 - MIR SINE MIR -52 210 6 481 278 37 25 chr1 18135633 18135795 -264057869 + MIR SINE MIR 72 235 -27 1734 138 19 80 chr1 18136072 18136203 -264057461 + AluJo SINE Alu 3 140 -172 2365 88 3 0 chr1 18136203 18136498 -264057166 - AluSx SINE Alu -16 296 1 1734 138 19 80 chr1 18136498 18136691 -264056973 + AluJo SINE Alu 140 307 -5 341 340 101 30 chr1 18136746 18137043 -264056621 - L2 LINE L2 -99 3173 2856 292 290 180 10 chr1 18137079 18137279 -264056385 - L2 LINE L2 -801 2513 2280 2380 84 0 10 chr1 18137326 18137625 -264056039 + AluY SINE Alu 1 296 -15 2025 146 0 16 chr1 18137846 18138161 -264055503 - AluJb SINE Alu -2 310 1 268 337 22 0 chr1 18139052 18139144 -264054520 - MIR3 SINE MIR -34 174 81 183 355 16 0 chr1 18139603 18139665 -264053999 + MIR SINE MIR 157 219 -43 466 250 74 27 chr1 18139764 18139912 -264053752 + L2 LINE L2 3159 3313 0 1524 111 97 62 chr1 18140110 18140244 -264053420 + AluJo SINE Alu 1 129 -183 2454 73 0 7 chr1 18140244 18140547 -264053117 + AluSg1 SINE Alu 1 301 -8 1524 111 97 62 chr1 18140547 18140700 -264052964 + AluJo SINE Alu 129 298 -14 2393 81 0 3 chr1 18140702 18141000 -264052664 + AluSg SINE Alu 1 297 -13 305 315 27 36 chr1 18141682 18141793 -264051871 - MIR SINE MIR -147 115 6 187 242 187 11 chr1 18142053 18142144 -264051520 + MIR SINE MIR 119 225 -37 204 229 177 42 chr1 18142606 18142702 -264050962 + MIR SINE MIR 40 148 -114 190 288 38 25 chr1 18143129 18143209 -264050455 + L2 LINE L2 3141 3221 -92 2340 93 0 26 chr1 18143232 18143544 -264050120 + AluSq SINE Alu 2 305 -8 396 299 26 0 chr1 18143689 18143806 -264049858 - MIR SINE MIR -90 172 53 208 311 179 0 chr1 18144390 18144496 -264049168 + MIR SINE MIR 126 250 -12 2242 99 0 20 chr1 18144707 18145011 -264048653 - AluSq SINE Alu -15 298 1 2015 98 57 14 chr1 18145431 18145728 -264047936 + AluYa5 SINE Alu 2 311 0 1957 149 14 0 chr1 18145781 18146076 -264047588 + AluSx SINE Alu 1 299 -13 1689 168 75 0 chr1 18146087 18146367 -264047297 + AluJo SINE Alu 1 301 -11 2291 113 0 19 chr1 18146367 18146686 -264046978 + AluSq SINE Alu 1 313 0 2939 187 14 50 chr1 18146791 18147401 -264046263 + L1MD1 LINE L1 5560 6190 -52 1555 172 25 21 chr1 18147401 18147680 -264045984 + AluJb SINE Alu 3 282 -30 1864 150 0 21 chr1 18147680 18147967 -264045697 - AluSx SINE Alu -15 297 17 2939 187 14 50 chr1 18147967 18147992 -264045672 + L1MD1 LINE L1 6189 6213 -29 2311 122 3 0 chr1 18147992 18148303 -264045361 - AluSx SINE Alu 0 312 1 2939 187 14 50 chr1 18148303 18148361 -264045303 + L1MD1 LINE L1 6213 6232 -10 2263 112 3 0 chr1 18148361 18148664 -264045000 + AluSp SINE Alu 1 304 -9 950 215 127 16 chr1 18148679 18148995 -264044669 + L1ME1 LINE L1 5811 6161 -5 1039 206 84 4 chr1 18149327 18149613 -264044051 - MER51A LTR ERV1 0 640 334 1701 183 52 0 chr1 18149749 18150038 -264043626 - AluJb SINE Alu 0 312 9 302 278 69 62 chr1 18150208 18150352 -264043312 + L2 LINE L2 3169 3313 0 2221 127 0 3 chr1 18150752 18151052 -264042612 + AluSx SINE Alu 1 299 -13 1308 260 88 8 chr1 18151316 18151681 -264041983 - MLT1E2 LTR MaLR -1 625 232 316 324 77 53 chr1 18152004 18152117 -264041547 + L1M4 LINE L1 2725 2834 -3312 2393 101 3 0 chr1 18152117 18152423 -264041241 + AluSx SINE Alu 1 307 -5 316 324 77 53 chr1 18152423 18152556 -264041108 + L1M4 LINE L1 2834 2977 -3169 1925 163 7 0 chr1 18152593 18152882 -264040782 - AluJb SINE Alu -21 291 1 706 274 18 27 chr1 18152929 18153152 -264040512 + L1ME LINE L1 11 231 -5839 354 151 0 0 chr1 18153193 18153246 -264040418 + Alu SINE Alu 1 53 -248 1618 114 0 0 chr1 18153247 18153458 -264040206 + AluSg/x SINE Alu 92 302 -10 488 250 0 8 chr1 18153461 18153589 -264040075 + L1ME LINE L1 276 402 -5668 229 272 0 12 chr1 18153592 18153673 -264039991 + L1ME LINE L1 518 597 -5473 2140 110 27 0 chr1 18153688 18153988 -264039676 - AluSx SINE Alu -2 310 3 2178 255 48 64 chr1 18153989 18154218 -264039446 + L1ME LINE L1 738 969 -5292 2318 115 3 3 chr1 18154218 18154530 -264039134 - AluSx SINE Alu 0 312 1 2178 255 48 64 chr1 18154530 18154614 -264039050 + L1ME LINE L1 969 1053 -5208 1655 181 3 35 chr1 18154614 18154901 -264038763 + AluJo SINE Alu 1 278 -34 2178 255 48 64 chr1 18154901 18155744 -264037920 + L1ME LINE L1 1053 1910 -4351 1563 142 18 121 chr1 18155744 18156075 -264037589 - AluJo SINE Alu -5 297 1 2178 255 48 64 chr1 18156075 18156375 -264037289 + L1ME LINE L1 1910 2213 -4048 1247 206 24 187 chr1 18156408 18157003 -264036661 + L1M4 LINE L1 3846 4341 -1805 685 227 45 23 chr1 18157041 18157165 -264036499 + L1M4 LINE L1 4108 4228 -1918 1670 142 3 87 chr1 18157165 18157225 -264036439 + AluJo SINE Alu 1 64 -248 2345 87 0 10 chr1 18157225 18157523 -264036141 - AluSp SINE Alu -18 295 1 1670 142 3 87 chr1 18157523 18157621 -264036043 + AluJo SINE Alu 64 169 -143 2022 153 0 0 chr1 18157621 18157909 -264035755 + AluSx SINE Alu 1 288 -24 1670 142 3 87 chr1 18157909 18157934 -264035730 + AluJo SINE Alu 169 304 -8 918 122 7 14 chr1 18157934 18158081 -264035583 + AluJb SINE Alu 159 304 -8 685 227 45 23 chr1 18158081 18158176 -264035488 + L1M4 LINE L1 4228 4332 -1814 757 146 0 46 chr1 18158421 18158551 -264035113 + FLAM_C SINE Alu 2 125 -18 332 275 10 53 chr1 18158563 18158735 -264034929 - L1MC4 LINE L1 -1339 6703 6500 343 143 95 19 chr1 18158752 18158857 -264034807 + L1M4 LINE L1 4314 4426 -1720 1052 168 33 37 chr1 18158860 18159074 -264034590 + AluJb SINE Alu 91 303 -9 1293 183 8 4 chr1 18159074 18159320 -264034344 + L1M4 LINE L1 4446 4692 -1454 1832 94 17 42 chr1 18159480 18159808 -264033856 - AluY SINE Alu 0 321 1 451 272 24 16 chr1 18160387 18160512 -264033152 + L2 LINE L2 3187 3312 -1 1815 106 4 0 chr1 18160698 18160944 -264032720 + AluSx SINE Alu 1 247 -65 1743 148 10 7 chr1 18160944 18161235 -264032429 + AluJb SINE Alu 16 307 -5 181 200 0 50 chr1 18161333 18161373 -264032291 - L2 LINE L2 -15 3298 3261 * 355 263 212 0 chr1 18161339 18161476 -264032188 - MIR SINE MIR -13 249 84 297 340 136 12 chr1 18161513 18161675 -264031989 - MIR SINE MIR -30 232 51 2110 83 45 0 chr1 18162891 18163179 -264030485 + AluSx SINE Alu 2 302 -10 383 223 47 54 chr1 18163393 18163541 -264030123 - MIR SINE MIR -95 167 21 21 0 0 0 chr1 18164075 18164096 -264029568 + AT_rich Low_complexity Low_complexity 1 21 0 784 144 30 23 chr1 18164289 18164421 -264029243 + FLAM_C SINE Alu 1 133 0 1950 76 4 0 chr1 18164441 18164692 -264028972 + AluSg SINE Alu 43 294 -16 1570 173 6 77 chr1 18165043 18165170 -264028494 + AluJo SINE Alu 2 136 -166 1874 128 45 0 chr1 18165170 18165458 -264028206 - AluSx SINE Alu -11 301 1 1570 173 6 77 chr1 18165458 18165654 -264028010 + AluJo SINE Alu 136 302 0 1010 76 0 0 chr1 18165815 18165947 -264027717 + AluSp/q SINE Alu 170 301 -12 1806 152 0 53 chr1 18165961 18166284 -264027380 + AluJo SINE Alu 7 312 0 385 292 22 73 chr1 18166321 18166499 -264027165 - MLT1J LTR MaLR -113 398 230 243 88 0 0 chr1 18167470 18167504 -264026160 + (TTC)n Simple_repeat Simple_repeat 2 35 0 241 260 173 10 chr1 18167887 18167991 -264025673 - Charlie8 DNA MER1_type -2270 147 27 26 0 0 0 chr1 18168421 18168447 -264025217 + AT_rich Low_complexity Low_complexity 1 26 0 607 175 0 124 chr1 18168448 18168585 -264025079 + FLAM_A SINE Alu 1 120 -13 2091 132 7 0 chr1 18168715 18169019 -264024645 + AluSx SINE Alu 1 306 -6 1440 148 26 0 chr1 18169325 18169555 -264024109 - MER46A DNA MER2_type 0 236 1 270 152 22 0 chr1 18169684 18169730 -264023934 - MER57A LTR ERV1 -66 337 291 1374 152 0 0 chr1 18169753 18169970 -264023694 + AluJo SINE Alu 86 302 -10 936 265 109 18 chr1 18169973 18170430 -264023234 - L1ME4a LINE L1 -92 6029 5531 420 313 55 15 chr1 18170618 18170819 -264022845 + MIR SINE MIR 2 210 -52 743 198 148 6 chr1 18173440 18173602 -264020062 - MSTD LTR MaLR 0 396 212 2240 73 3 17 chr1 18173615 18173915 -264019749 - AluSp SINE Alu -17 296 1 994 136 39 0 chr1 18173926 18174080 -264019584 - FRAM SINE Alu -20 156 1 970 165 29 0 chr1 18174081 18174251 -264019413 - MSTD LTR MaLR -221 175 1 352 83 0 0 chr1 18174645 18174693 -264018971 + MIR SINE MIR 204 251 -11 182 390 0 0 chr1 18174741 18174818 -264018846 + MER5A DNA MER1_type 95 171 -18 * 201 355 0 0 chr1 18174756 18174832 -264018832 - MER5B DNA MER1_type -98 80 5 583 223 54 43 chr1 18174938 18175122 -264018542 - MIR3 SINE MIR -4 204 19 1083 125 80 45 chr1 18175423 18175623 -264018041 + AluJo SINE Alu 83 289 -23 239 197 0 33 chr1 18175629 18175690 -264017974 + CT-rich Low_complexity Low_complexity 1 59 0 493 295 2 2 chr1 18176786 18176942 -264016722 + MIR SINE MIR 30 184 -63 2084 120 3 3 chr1 18177208 18177517 -264016147 + AluSx SINE Alu 1 309 -3 1092 172 6 0 chr1 18177657 18177831 -264015833 + FAM SINE Alu 1 175 0 587 156 0 11 chr1 18177850 18177940 -264015724 + FLAM_C SINE Alu 29 117 -26 1755 54 9 5 chr1 18178045 18178269 -264015395 - AluY SINE Alu -86 225 1 2523 50 0 0 chr1 18178349 18178652 -264015012 - AluY SINE Alu -8 303 1 238 256 71 0 chr1 18178702 18178777 -264014887 - L1MC/D LINE L1 -329 5792 5731 1722 112 80 14 chr1 18179365 18179651 -264014013 - AluSx SINE Alu -7 305 1 869 183 59 16 chr1 18179969 18180155 -264013509 + AluJo SINE Alu 115 308 -4 311 282 121 16 chr1 18180211 18180335 -264013329 + MIR SINE MIR 112 248 -14 1582 129 24 87 chr1 18180640 18180973 -264012691 + AluJb SINE Alu 1 312 0 387 0 0 0 chr1 18181560 18181603 -264012061 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 276 317 32 23 chr1 18181721 18181874 -264011790 - MIR SINE MIR -46 162 2 410 229 33 16 chr1 18182120 18182242 -264011422 + L2 LINE L2 2392 2515 -799 258 348 116 0 chr1 18182419 18182531 -264011133 + L2 LINE L2 3146 3270 -2 1218 100 6 0 chr1 18182946 18183116 -264010548 - AluSp SINE Alu -9 304 134 323 257 49 35 chr1 18183116 18183288 -264010376 - MIR SINE MIR -60 202 25 24 106 0 0 chr1 18183526 18183620 -264010044 + GC_rich Low_complexity Low_complexity 1 94 0 299 275 117 8 chr1 18184644 18184764 -264008900 + MIR SINE MIR 51 183 -79 592 243 20 7 chr1 18184791 18184943 -264008721 + MIR SINE MIR 59 212 -50 1891 121 0 0 chr1 18185000 18185264 -264008400 + AluSx SINE Alu 1 264 -48 1793 147 13 19 chr1 18185683 18185996 -264007668 + AluJo SINE Alu 1 311 -1 2094 72 20 46 chr1 18186403 18186709 -264006955 - AluY SINE Alu -13 298 1 221 254 34 17 chr1 18186912 18187002 -264006662 - MIR SINE MIR -64 144 80 1188 135 47 0 chr1 18187032 18187224 -264006440 + AluJb SINE Alu 91 291 -21 421 75 0 0 chr1 18187243 18187296 -264006368 + Alu SINE Alu 1 53 -259 213 39 0 0 chr1 18187313 18187339 -264006325 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 2586 39 0 0 chr1 18187528 18187834 -264005830 + AluY SINE Alu 2 307 -4 273 234 9 81 chr1 18187939 18188050 -264005614 - MER5A DNA MER1_type -44 145 43 1893 107 50 0 chr1 18188201 18188482 -264005182 + AluSx SINE Alu 1 295 -17 2309 94 0 0 chr1 18188827 18189125 -264004539 + AluSx SINE Alu 1 298 -14 2141 114 3 3 chr1 18189215 18189523 -264004141 - AluSx SINE Alu -2 310 3 301 324 45 40 chr1 18190038 18190214 -264003450 + MIR3 SINE MIR 17 193 -15 284 290 21 11 chr1 18190694 18190787 -264002877 + MIR3 SINE MIR 93 186 -22 487 314 21 21 chr1 18191093 18191287 -264002377 + MIR SINE MIR 15 208 -54 2237 112 0 0 chr1 18191416 18191721 -264001943 + AluSg SINE Alu 1 305 -5 393 22 0 0 chr1 18191746 18191792 -264001872 + (TG)n Simple_repeat Simple_repeat 1 46 0 2128 113 3 0 chr1 18191793 18192102 -264001562 - AluSq SINE Alu -3 310 1 385 268 10 0 chr1 18192110 18192207 -264001457 - LTR16C LTR ERVL -4 487 390 675 261 32 5 chr1 18192536 18192724 -264000940 - MIR SINE MIR 0 262 70 229 204 20 0 chr1 18193156 18193205 -264000459 + MIR SINE MIR 99 148 -60 196 314 48 19 chr1 18193672 18193777 -263999887 - MIR SINE MIR -74 188 81 2124 115 0 31 chr1 18193919 18194242 -263999422 - AluSq SINE Alu 0 313 1 495 308 103 6 chr1 18194244 18194400 -263999264 + MIR SINE MIR 79 249 -13 1430 157 0 0 chr1 18194412 18194647 -263999017 - AluJb SINE Alu -6 306 72 1980 142 3 0 chr1 18195450 18195753 -263997911 - AluSx SINE Alu -3 309 6 281 270 11 34 chr1 18195782 18195871 -263997793 + MIR SINE MIR 57 143 -119 2173 117 3 0 chr1 18195972 18196279 -263997385 - AluSq SINE Alu -5 308 1 313 321 171 20 chr1 18196500 18196752 -263996912 - L1MC4a LINE L1 -1869 5939 5650 1906 151 0 3 chr1 18196872 18197171 -263996493 + AluSx SINE Alu 1 298 -14 276 100 17 33 chr1 18197471 18197531 -263996133 + (TCCCC)n Simple_repeat Simple_repeat 3 61 0 2079 104 7 0 chr1 18197531 18197818 -263995846 - AluSq SINE Alu -24 289 1 229 26 26 26 chr1 18198029 18198067 -263995597 + MIR SINE MIR 108 145 -117 245 329 98 0 chr1 18198415 18198558 -263995106 + MIR3 SINE MIR 17 173 -35 1873 106 84 0 chr1 18199632 18199906 -263993758 + AluSx SINE Alu 1 297 -15 2144 111 0 3 chr1 18200416 18200714 -263992950 + AluSg SINE Alu 1 297 -13 2207 96 0 0 chr1 18200845 18201180 -263992484 + AluSx SINE Alu 1 335 0 207 295 181 13 chr1 18201261 18201410 -263992254 - L2 LINE L2 -182 3090 2917 1706 129 49 21 chr1 18201870 18202156 -263991508 + AluJb SINE Alu 1 294 -18 1961 144 0 3 chr1 18202161 18202453 -263991211 + AluSx SINE Alu 1 291 -21 429 318 101 28 chr1 18202484 18202701 -263990963 - MIR SINE MIR -19 243 11 383 250 150 14 chr1 18203737 18203877 -263989787 - MIR SINE MIR -15 247 89 861 157 0 0 chr1 18203993 18204127 -263989537 + AluJb SINE Alu 1 134 -178 2227 88 0 3 chr1 18204127 18204423 -263989241 + AluSx SINE Alu 1 295 -17 1945 110 3 17 chr1 18204559 18204859 -263988805 + AluSx SINE Alu 3 298 -14 347 226 65 0 chr1 18204921 18205014 -263988650 - MIR SINE MIR -123 139 41 1822 146 7 3 chr1 18205867 18206154 -263987510 + AluJb SINE Alu 1 288 -24 1908 107 50 11 chr1 18206162 18206442 -263987222 + AluSx SINE Alu 2 291 -21 2339 73 0 3 chr1 18206444 18206732 -263986932 + AluSq SINE Alu 1 320 0 277 30 0 0 chr1 18206732 18206765 -263986899 + (TAA)n Simple_repeat Simple_repeat 2 180 0 221 323 32 0 chr1 18206771 18206833 -263986831 - L2 LINE L2 -18 3295 3232 190 328 35 0 chr1 18207330 18207388 -263986276 + MIR SINE MIR 41 100 -162 2470 75 0 0 chr1 18209703 18210010 -263983654 - AluSx SINE Alu -5 307 1 353 226 349 7 chr1 18210016 18210162 -263983502 - MIR SINE MIR -51 211 16 2114 138 0 3 chr1 18211042 18211353 -263982311 - AluJb SINE Alu -2 310 1 282 370 24 51 chr1 18211810 18212064 -263981600 - L2 LINE L2 0 3313 3067 1844 142 6 29 chr1 18212386 18212697 -263980967 + AluSx SINE Alu 1 304 -8 1816 137 38 20 chr1 18212707 18213000 -263980664 + AluSx SINE Alu 1 298 -14 1612 218 98 26 chr1 18213000 18213160 -263980504 - LTR64 LTR ERVK -23 535 388 1738 128 39 64 chr1 18213160 18213472 -263980192 + AluJo SINE Alu 1 304 -8 1612 218 98 26 chr1 18213472 18213810 -263979854 - LTR64 LTR ERVK -170 388 1 206 277 214 46 chr1 18213810 18214048 -263979616 - L2 LINE L2 -721 2593 2316 601 192 0 96 chr1 18214095 18214241 -263979423 + FLAM_C SINE Alu 1 132 -1 187 359 17 0 chr1 18214271 18214388 -263979276 - L2 LINE L2 -1192 2122 2004 208 269 90 0 chr1 18214404 18214471 -263979193 + MIR SINE MIR 72 144 -118 25 75 0 0 chr1 18214812 18214865 -263978799 + GC_rich Low_complexity Low_complexity 1 53 0 699 279 128 28 chr1 18217598 18218020 -263975644 - L2 LINE L2 0 3272 2799 210 321 46 0 chr1 18218609 18218718 -263974946 + (CCCCAG)n Simple_repeat Simple_repeat 4 117 0 2063 115 10 13 chr1 18221305 18221610 -263972054 + AluSx SINE Alu 1 304 -8 436 249 24 79 chr1 18221685 18221850 -263971814 - MIR SINE MIR -74 188 33 440 214 164 13 chr1 18221879 18222064 -263971600 - MIR SINE MIR -37 225 3 543 267 109 50 chr1 18223211 18223533 -263970131 + MLT1K LTR MaLR 71 411 -177 404 50 0 17 chr1 18224125 18224185 -263969479 + (CA)n Simple_repeat Simple_repeat 2 60 0 183 364 0 0 chr1 18225151 18225217 -263968447 + MIR SINE MIR 106 171 -91 644 283 47 5 chr1 18226733 18226924 -263966740 + MIR SINE MIR 27 225 -37 191 280 65 65 chr1 18227284 18227391 -263966273 + MIR3 SINE MIR 82 188 -20 196 233 0 0 chr1 18227528 18227571 -263966093 + MER5A DNA MER1_type 60 102 -87 194 252 26 0 chr1 18228203 18228266 -263965398 - MIR SINE MIR -60 148 106 1941 125 41 0 chr1 18228300 18228595 -263965069 - AluJb SINE Alu 0 312 6 263 283 244 25 chr1 18229824 18230107 -263963557 + L2 LINE L2 2878 3222 -50 252 233 100 33 chr1 18230163 18230253 -263963411 - MIR SINE MIR -72 190 95 981 104 8 0 chr1 18230263 18230397 -263963267 + AluSx SINE Alu 1 135 -177 2048 123 10 0 chr1 18230397 18230697 -263962967 + AluSx SINE Alu 1 303 -9 2063 110 19 19 chr1 18230697 18231053 -263962611 + AluSg SINE Alu 1 358 0 1029 139 15 69 chr1 18231053 18231255 -263962409 + AluSx SINE Alu 120 310 0 2154 95 0 16 chr1 18231277 18231583 -263962081 + AluSx SINE Alu 1 301 -11 194 277 0 0 chr1 18231603 18231650 -263962014 - MIR SINE MIR -181 81 35 185 333 226 0 chr1 18231898 18232057 -263961607 + L2 LINE L2 2753 2947 -367 2211 114 0 3 chr1 18232172 18232478 -263961186 - AluSq SINE Alu -8 305 1 478 165 0 0 chr1 18232478 18232563 -263961101 - L1MB4 LINE L1 -40 6140 6056 424 116 0 0 chr1 18232571 18232640 -263961024 + AluSq/x SINE Alu 63 131 -172 204 97 0 0 chr1 18232640 18232671 -263960993 + (TA)n Simple_repeat Simple_repeat 2 32 0 782 144 0 0 chr1 18232705 18232816 -263960848 + AluSx SINE Alu 2 112 -201 2329 54 40 7 chr1 18232816 18233114 -263960550 - AluYa5 SINE Alu -3 308 1 1499 100 0 9 chr1 18233115 18233325 -263960339 + AluSx SINE Alu 101 308 -2 304 253 11 0 chr1 18233325 18233416 -263960248 - MER2 DNA MER2_type -138 207 116 1434 189 63 28 chr1 18233489 18233775 -263959889 + AluJb SINE Alu 6 301 -11 1388 126 19 0 chr1 18233808 18234015 -263959649 + AluJo SINE Alu 1 211 -101 225 0 0 0 chr1 18234147 18234172 -263959492 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 655 210 146 36 chr1 18234858 18235077 -263958587 - MIR SINE MIR 0 262 20 2149 118 3 10 chr1 18235079 18235393 -263958271 - AluSx SINE Alu 0 312 1 230 54 0 27 chr1 18235393 18235430 -263958234 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 445 148 0 125 chr1 18235433 18235561 -263958103 - LTR53 LTR ERVL -100 419 308 207 213 21 0 chr1 18235586 18235633 -263958031 - MIR SINE MIR -213 49 2 236 282 32 40 chr1 18235853 18235975 -263957689 - MIR SINE MIR -75 133 29 393 234 78 106 chr1 18235981 18236058 -263957606 + MIR SINE MIR 72 145 -117 2184 103 0 3 chr1 18236058 18236359 -263957305 + AluSx SINE Alu 5 304 -8 393 234 78 106 chr1 18236359 18236422 -263957242 + MIR SINE MIR 145 208 -54 869 250 10 10 chr1 18237129 18237337 -263956327 - MIR SINE MIR -10 252 45 28 48 0 0 chr1 18237586 18237628 -263956036 + AT_rich Low_complexity Low_complexity 1 42 0 2332 96 0 6 chr1 18237633 18237947 -263955717 + AluSq SINE Alu 1 312 -1 1791 166 3 0 chr1 18237963 18238252 -263955412 - AluJo SINE Alu -22 290 1 953 110 0 7 chr1 18238252 18238388 -263955276 - AluJb SINE Alu -177 135 1 217 254 0 84 chr1 18238472 18238543 -263955121 + L2 LINE L2 3200 3264 -8 1515 229 14 40 chr1 18238560 18238910 -263954754 + MER58B DNA MER1_type 1 341 0 263 283 11 33 chr1 18239097 18239189 -263954475 - MIR3 SINE MIR -41 167 78 449 259 38 8 chr1 18241358 18241489 -263952175 - MIR SINE MIR -68 194 60 322 267 224 6 chr1 18241681 18241851 -263951813 - MIR3 SINE MIR -12 250 45 208 305 37 0 chr1 18242303 18242385 -263951279 - L2 LINE L2 -263 3009 2925 399 295 15 95 chr1 18242829 18242876 -263950788 - MER91B DNA MER1_type -6 184 135 2066 111 3 3 chr1 18242876 18243174 -263950490 - AluY SINE Alu -13 298 1 399 295 15 95 chr1 18243174 18243202 -263950462 - MER91B DNA MER1_type -55 135 106 2151 102 10 0 chr1 18243202 18243497 -263950167 + AluSg SINE Alu 12 309 -1 399 295 15 95 chr1 18243497 18243620 -263950044 - MER91B DNA MER1_type -84 106 1 532 315 123 14 chr1 18243682 18243901 -263949763 - MIR SINE MIR -3 259 17 187 167 0 0 chr1 18244066 18244096 -263949568 - MER5A DNA MER1_type -105 84 55 217 233 12 4 chr1 18244544 18244610 -263949054 + MIR SINE MIR 77 145 -63 2112 109 7 3 chr1 18244720 18245013 -263948651 + AluSq SINE Alu 1 294 -19 2073 123 3 0 chr1 18245015 18245307 -263948357 + AluSq SINE Alu 1 293 -20 2225 109 3 0 chr1 18245309 18245613 -263948051 + AluSp SINE Alu 1 305 -8 549 256 62 12 chr1 18245624 18245784 -263947880 - MIR SINE MIR -17 245 78 487 297 52 24 chr1 18246166 18246378 -263947286 - MIR SINE MIR -35 227 10 268 304 25 0 chr1 18247139 18247218 -263946446 + MIR SINE MIR 41 121 -87 2003 129 33 0 chr1 18247249 18247551 -263946113 + AluSx SINE Alu 1 312 0 2067 88 29 0 chr1 18247859 18248183 -263945481 - AluSx SINE Alu 0 332 1 440 246 66 0 chr1 18248185 18248307 -263945357 - MIR SINE MIR -117 145 16 275 253 0 24 chr1 18248815 18248898 -263944766 + (CAGAGA)n Simple_repeat Simple_repeat 3 83 0 335 227 94 0 chr1 18250069 18250131 -263943533 + MIR SINE MIR 104 159 -103 2187 108 0 0 chr1 18250131 18250427 -263943237 - AluSx SINE Alu -16 296 1 335 227 94 0 chr1 18250427 18250477 -263943187 + MIR SINE MIR 159 231 -31 837 263 81 0 chr1 18250564 18250800 -263942864 + MIR SINE MIR 8 262 0 204 250 0 0 chr1 18250821 18250869 -263942795 + (TTA)n Simple_repeat Simple_repeat 3 50 0 289 303 64 18 chr1 18250870 18250979 -263942685 + MIR SINE MIR 58 171 -91 196 235 113 43 chr1 18251309 18251424 -263942240 + L2 LINE L2 2942 3064 -208 2326 80 0 3 chr1 18251818 18252120 -263941544 - AluY SINE Alu -8 303 3 2145 95 7 0 chr1 18252123 18252417 -263941247 - AluSx SINE Alu -16 296 1 1013 105 0 0 chr1 18252421 18252554 -263941110 - AluSq/x SINE Alu -179 133 1 273 362 0 0 chr1 18252770 18252864 -263940800 + MIR SINE MIR 165 258 -4 1768 160 45 0 chr1 18253081 18253369 -263940295 + AluJb SINE Alu 2 302 -10 868 152 0 0 chr1 18253376 18253501 -263940163 + FLAM_C SINE Alu 1 125 -8 320 202 293 0 chr1 18253524 18253623 -263940041 + MER3 DNA MER1_type 2 129 -80 2354 75 0 13 chr1 18253623 18253930 -263939734 - AluY SINE Alu -7 304 2 1503 126 0 0 chr1 18253931 18254146 -263939518 - AluSg/x SINE Alu -8 304 90 29 0 0 0 chr1 18254187 18254216 -263939448 + AT_rich Low_complexity Low_complexity 1 29 0 823 156 0 7 chr1 18254217 18254352 -263939312 + AluJo SINE Alu 1 134 -178 485 282 35 0 chr1 18454531 18454701 -263738963 + MIR3 SINE MIR 22 197 -11 447 311 5 62 chr1 18454878 18455071 -263738593 - MER5A DNA MER1_type -1 188 7 1042 201 6 0 chr1 18455102 18455276 -263738388 + FAM SINE Alu 1 175 0 2186 121 0 6 chr1 18455287 18455601 -263738063 + AluSx SINE Alu 1 312 0 404 317 7 28 chr1 18455720 18455865 -263737799 - MER5A DNA MER1_type -2 187 46 978 211 0 0 chr1 18456236 18456518 -263737146 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 451 375 71 10 chr1 18456528 18456824 -263736840 - L2 LINE L2 -3 3269 2956 790 254 36 9 chr1 18457298 18457518 -263736146 + MIR SINE MIR 12 237 -25 330 282 44 9 chr1 18457605 18457757 -263735907 + MIR SINE MIR 31 140 -68 236 346 74 31 chr1 18458394 18458556 -263735108 - MIR SINE MIR -73 189 21 2212 99 3 0 chr1 18458799 18459091 -263734573 - AluSp SINE Alu -20 293 1 460 297 132 9 chr1 18459188 18459400 -263734264 + MIR SINE MIR 19 256 -6 385 267 69 0 chr1 18460135 18460251 -263733413 + MIR3 SINE MIR 6 129 -79 200 325 13 26 chr1 18460253 18460330 -263733334 - L2 LINE L2 0 3313 3238 1882 155 0 7 chr1 18460359 18460662 -263733002 + AluJb SINE Alu 1 301 -11 249 310 70 0 chr1 18460687 18460787 -263732877 + MIR SINE MIR 156 262 0 185 254 0 68 chr1 18461016 18461075 -263732589 + L2 LINE L2 3255 3309 -4 313 237 9 79 chr1 18461429 18461459 -263732205 + L2 LINE L2 3191 3222 -91 2017 140 0 0 chr1 18461459 18461759 -263731905 - AluJb SINE Alu -10 302 3 313 237 9 79 chr1 18461759 18461842 -263731822 + L2 LINE L2 3222 3296 -17 222 91 0 0 chr1 18461846 18461879 -263731785 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 382 273 109 8 chr1 18461902 18462030 -263731634 - MIR SINE MIR -108 154 14 212 309 31 21 chr1 18462030 18462127 -263731537 + L3 LINE CR1 1475 1572 -5 830 308 8 8 chr1 18462790 18463037 -263730627 + MIR SINE MIR 6 252 -10 1654 189 68 0 chr1 18463223 18463546 -263730118 - MLT1A1 LTR MaLR -12 353 9 1160 155 24 19 chr1 18464389 18464602 -263729062 - MER20 DNA MER1_type -2 217 4 2100 119 0 3 chr1 18465602 18465895 -263727769 - AluSx SINE Alu -20 292 1 455 289 7 20 chr1 18466456 18466608 -263727056 - MIR SINE MIR -6 256 107 370 295 45 15 chr1 18467257 18467391 -263726273 + MIR SINE MIR 38 174 -62 1939 259 153 21 chr1 18468345 18469772 -263723892 - L2 LINE L2 -3 3310 1672 2027 132 0 0 chr1 18469772 18470060 -263723604 - AluSx SINE Alu -24 288 1 1939 259 153 21 chr1 18470060 18470098 -263723566 - L2 LINE L2 -1641 1672 1640 244 279 48 39 chr1 18470900 18471004 -263722660 + L2 LINE L2 3202 3306 -7 234 324 59 7 chr1 18471335 18471471 -263722193 + MIR3 SINE MIR 60 202 -6 197 139 23 0 chr1 18471799 18471842 -263721822 + GA-rich Low_complexity Low_complexity 1 44 0 259 304 51 0 chr1 18472430 18472509 -263721155 + MIR3 SINE MIR 79 161 -47 311 248 0 74 chr1 18473469 18473590 -263720074 + MER5B DNA MER1_type 45 156 -22 1425 130 49 16 chr1 18473777 18474023 -263719641 - AluSx SINE Alu -25 287 34 2339 72 0 7 chr1 18474089 18474393 -263719271 + AluY SINE Alu 1 302 -9 180 0 0 0 chr1 18474393 18474413 -263719251 + (TA)n Simple_repeat Simple_repeat 2 21 0 791 174 8 0 chr1 18474416 18474548 -263719116 + FLAM_C SINE Alu 1 133 0 2095 90 0 23 chr1 18474845 18475145 -263718519 + AluSq SINE Alu 1 293 -20 204 125 0 0 chr1 18475149 18475181 -263718483 + (TA)n Simple_repeat Simple_repeat 1 32 0 1973 112 3 24 chr1 18475189 18475483 -263718181 + AluSq SINE Alu 1 288 -25 2281 97 0 0 chr1 18475494 18475794 -263717870 + AluSx SINE Alu 1 300 -12 327 286 28 99 chr1 18475802 18475835 -263717829 - MLT1I LTR MaLR -46 363 329 2240 87 0 10 chr1 18475835 18475968 -263717696 + AluSg SINE Alu 1 134 -176 2128 112 0 3 chr1 18475968 18476272 -263717392 + AluSg SINE Alu 1 303 -7 2240 87 0 10 chr1 18476272 18476438 -263717226 + AluSg SINE Alu 134 297 -13 1998 110 3 36 chr1 18476440 18476749 -263716915 + AluY SINE Alu 3 301 -10 327 286 28 99 chr1 18476749 18476894 -263716770 - MLT1I LTR MaLR -81 328 195 1887 146 3 3 chr1 18477090 18477392 -263716272 - AluSx SINE Alu -10 302 1 581 264 90 12 chr1 18477422 18477627 -263716037 - MIR SINE MIR -1 261 41 2192 82 3 3 chr1 18477627 18477919 -263715745 - AluSp SINE Alu -21 292 1 581 264 90 12 chr1 18477919 18477941 -263715723 - MIR SINE MIR -221 41 22 817 182 0 8 chr1 18478056 18478188 -263715476 + FLAM_C SINE Alu 1 131 -2 186 43 0 0 chr1 18478420 18478443 -263715221 + (T)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chr1 18478454 18478488 -263715176 + AT_rich Low_complexity Low_complexity 1 34 0 598 39 0 0 chr1 18478494 18478572 -263715092 - L1PA3 LINE L1 0 6155 6078 502 266 56 0 chr1 18478600 18478743 -263714921 - MIR SINE MIR -107 155 5 750 174 8 23 chr1 18478924 18479056 -263714608 + FLAM_C SINE Alu 1 130 -3 1372 151 13 0 chr1 18479086 18479311 -263714353 - AluSx SINE Alu -84 228 1 357 299 136 0 chr1 18479320 18479467 -263714197 + MIR SINE MIR 81 247 -15 2136 117 0 0 chr1 18480061 18480351 -263713313 - AluSx SINE Alu -22 290 1 218 305 0 0 chr1 18480425 18480484 -263713180 + C-rich Low_complexity Low_complexity 2 60 0 2160 126 0 0 chr1 18480623 18480933 -263712731 - AluSx SINE Alu -2 310 1 391 325 44 58 chr1 18481670 18481765 -263711899 + MIR SINE MIR 58 153 -109 846 146 0 0 chr1 18481765 18481888 -263711776 + FLAM_C SINE Alu 1 123 -10 391 325 44 58 chr1 18481888 18481998 -263711666 + MIR SINE MIR 153 260 -2 1011 147 0 6 chr1 18482000 18482163 -263711501 - AluSg/x SINE Alu -12 298 137 419 337 35 25 chr1 18482476 18482675 -263710989 - L2 LINE L2 0 3313 3113 514 283 70 6 chr1 18482816 18482997 -263710667 - MIR SINE MIR -47 215 25 481 252 17 8 chr1 18483489 18483608 -263710056 + MIR SINE MIR 15 134 -128 2030 116 7 7 chr1 18483637 18483930 -263709734 - AluSx SINE Alu -19 293 1 1660 173 3 3 chr1 18483939 18484228 -263709436 - AluJo SINE Alu -23 289 1 2073 119 0 0 chr1 18484262 18484568 -263709096 + AluSx SINE Alu 1 306 0 24 0 0 0 chr1 18484568 18484592 -263709072 + AT_rich Low_complexity Low_complexity 1 24 0 605 278 56 39 chr1 18484780 18485064 -263708600 - MARNA DNA Mariner -39 547 259 2180 91 3 57 chr1 18485309 18485640 -263708024 - AluSp SINE Alu 0 313 1 1985 122 4 0 chr1 18485672 18485951 -263707713 - AluSx SINE Alu -32 280 1 469 202 24 24 chr1 18486644 18486768 -263706896 + MER20 DNA MER1_type 1 124 -95 2155 110 0 19 chr1 18486796 18487114 -263706550 - AluSx SINE Alu 0 312 1 1663 195 20 0 chr1 18487149 18487451 -263706213 - AluJb SINE Alu -4 308 1 204 243 0 0 chr1 18488514 18488551 -263705113 - MIR SINE MIR -193 69 33 317 287 68 12 chr1 18488669 18488834 -263704830 + MIR SINE MIR 25 207 -55 1645 139 68 7 chr1 18488837 18489118 -263704546 - AluSx SINE Alu -5 307 10 2051 124 0 7 chr1 18489170 18489477 -263704187 - AluSx SINE Alu -7 305 1 1084 201 18 27 chr1 18489506 18489730 -263703934 - MER58A DNA MER1_type 0 224 3 2230 108 0 34 chr1 18490024 18490347 -263703317 + AluSx SINE Alu 1 312 0 2176 81 3 20 chr1 18490403 18490700 -263702964 + AluSp SINE Alu 2 293 -20 367 226 0 21 chr1 18490751 18490844 -263702820 - MIR SINE MIR -51 211 121 1813 148 23 7 chr1 18490847 18491150 -263702514 + AluJb SINE Alu 5 312 0 484 120 13 13 chr1 18491152 18491227 -263702437 + AluSc SINE Alu 83 157 -152 1049 111 0 0 chr1 18491328 18491512 -263702152 + AluSg/x SINE Alu 140 323 0 794 144 0 0 chr1 18491522 18491640 -263702024 - AluJb SINE Alu -194 118 1 2093 115 3 16 chr1 18491873 18492187 -263701477 - AluSx SINE Alu -2 310 1 687 225 45 82 chr1 18492199 18492271 -263701393 - L1ME2 LINE L1 0 6164 6091 1901 144 0 3 chr1 18492271 18492569 -263701095 - AluSx SINE Alu -15 297 1 687 225 45 82 chr1 18492569 18492740 -263700924 - L1ME2 LINE L1 -73 6091 5930 1931 130 0 3 chr1 18492740 18493047 -263700617 - AluSx SINE Alu 0 306 1 1953 122 0 23 chr1 18493047 18493350 -263700314 - AluSx SINE Alu -16 296 1 667 222 11 23 chr1 18493419 18493595 -263700069 - MER34C LTR ERV1 -58 527 354 1977 109 23 3 chr1 18493698 18494001 -263699663 + AluSx SINE Alu 1 309 -3 2190 80 36 17 chr1 18494006 18494307 -263699357 + AluSx SINE Alu 6 312 0 2378 120 14 16 chr1 18494307 18494675 -263698989 - MER34C LTR ERV1 -214 371 5 1669 213 26 62 chr1 18494679 18494994 -263698670 - L1ME2 LINE L1 -361 5803 5511 1612 167 0 52 chr1 18494994 18495299 -263698365 - AluJo SINE Alu -11 301 13 1669 213 26 62 chr1 18495299 18495485 -263698179 - L1ME2 LINE L1 -653 5511 5320 1667 177 0 0 chr1 18495495 18495772 -263697892 + AluJo SINE Alu 1 277 -35 1444 170 98 14 chr1 18495774 18496050 -263697614 - AluJo SINE Alu -1 301 3 1977 111 3 17 chr1 18496081 18496369 -263697295 + AluSg SINE Alu 1 284 -26 854 67 8 17 chr1 18496482 18496601 -263697063 - AluSp SINE Alu -195 118 1 548 71 38 4 chr1 18496656 18496866 -263696798 + AluSp SINE Alu 1 296 -17 2420 57 0 0 chr1 18496955 18497252 -263696412 + AluY SINE Alu 1 297 -14 923 161 0 0 chr1 18497252 18497395 -263696269 + AluSg/x SINE Alu 134 276 -36 216 0 0 0 chr1 18497395 18497419 -263696245 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1435 160 93 4 chr1 18497502 18497770 -263695894 - AluJb SINE Alu -20 292 1 2036 123 3 3 chr1 18497795 18498097 -263695567 - AluSx SINE Alu -10 302 1 1635 153 57 7 chr1 18498103 18498385 -263695279 - AluSx SINE Alu -16 296 1 3109 108 15 2 chr1 18498385 18498846 -263694818 + MER41A LTR ERV1 88 554 0 2255 91 0 0 chr1 18498872 18499168 -263694496 + AluSx SINE Alu 1 296 -16 836 199 6 34 chr1 18499216 18499392 -263694272 - AluJo SINE Alu -138 174 4 2018 122 3 10 chr1 18499456 18499787 -263693877 - AluSg SINE Alu 0 310 1 1026 167 5 21 chr1 18499790 18499982 -263693682 - AluSg/x SINE Alu -3 307 119 328 119 0 30 chr1 18499984 18500051 -263693613 - L1M4 LINE L1 -2896 3250 3186 1057 162 0 6 chr1 18500052 18500225 -263693439 - AluSg/x SINE Alu -18 294 123 665 244 74 106 chr1 18500231 18500279 -263693385 - L1M4 LINE L1 -2875 3271 3223 2025 102 48 3 chr1 18500279 18500574 -263693090 - AluSg SINE Alu -2 308 1 665 244 74 106 chr1 18500574 18500808 -263692856 - L1M4 LINE L1 -2923 3223 2929 1111 221 0 71 chr1 18500809 18500891 -263692773 + AluJb SINE Alu 1 87 -225 2203 93 3 3 chr1 18500891 18501191 -263692473 + AluSq SINE Alu 1 300 -13 1111 221 0 71 chr1 18501191 18501402 -263692262 + AluJb SINE Alu 87 273 -39 672 328 25 62 chr1 18501479 18501927 -263691737 - L1MEc LINE L1 -5930 466 36 2011 115 10 7 chr1 18501948 18502253 -263691411 - AluSx SINE Alu -5 307 2 1312 120 163 35 chr1 18502284 18502542 -263691122 - AluSg1 SINE Alu -18 291 1 1384 164 8 20 chr1 18502909 18503153 -263690511 + AluJb SINE Alu 72 312 0 358 263 127 0 chr1 18503202 18503320 -263690344 + MIR3 SINE MIR 54 186 -22 362 299 85 45 chr1 18503704 18503905 -263689759 + MIR SINE MIR 53 261 -1 1990 112 0 24 chr1 18503926 18504221 -263689443 - AluJo SINE Alu -16 296 9 487 284 46 67 chr1 18504368 18504562 -263689102 - MIR3 SINE MIR -1 207 18 580 297 57 31 chr1 18504847 18505005 -263688659 + MIR SINE MIR 28 197 -65 1880 137 3 78 chr1 18505005 18505328 -263688336 + AluSx SINE Alu 1 297 -15 580 297 57 31 chr1 18505328 18505396 -263688268 + MIR SINE MIR 197 262 0 232 236 83 14 chr1 18505419 18505491 -263688173 - MIR SINE MIR -111 151 75 222 219 123 41 chr1 18505791 18505864 -263687800 + MIR SINE MIR 38 116 -92 264 315 0 0 chr1 18506356 18506429 -263687235 + L2 LINE L2 3189 3261 -11 246 319 49 59 chr1 18506526 18506730 -263686934 + MIR SINE MIR 36 237 -25 655 318 134 15 chr1 18506755 18506955 -263686709 + L2 LINE L2 2071 2246 -1068 2231 119 3 3 chr1 18506955 18507265 -263686399 - AluSq SINE Alu -3 310 1 655 318 134 15 chr1 18507265 18507668 -263685996 + L2 LINE L2 2246 2746 -568 201 366 38 53 chr1 18507678 18507809 -263685855 + L2 LINE L2 3140 3268 -4 775 233 30 99 chr1 18507971 18508303 -263685361 + L2 LINE L2 2899 3204 -109 2183 132 0 0 chr1 18508303 18508607 -263685057 + AluSx SINE Alu 1 304 -8 775 233 30 99 chr1 18508607 18508647 -263685017 + L2 LINE L2 3204 3245 -68 2274 118 16 0 chr1 18508677 18508982 -263684682 + AluSx SINE Alu 1 310 -2 834 234 77 89 chr1 18508983 18509479 -263684185 + MER34 LTR ERV1 53 542 0 465 325 46 0 chr1 18509481 18509675 -263683989 - MIR SINE MIR -1 261 59 193 324 29 0 chr1 18509702 18509770 -263683894 + L2 LINE L2 3244 3313 0 276 283 75 17 chr1 18509786 18509906 -263683758 + L1ME4a LINE L1 5977 6103 -18 454 272 113 41 chr1 18511023 18511218 -263682446 + MIR SINE MIR 9 217 -45 228 182 0 0 chr1 18511662 18511706 -263681958 + L2 LINE L2 2919 2962 -310 217 209 0 0 chr1 18511726 18511769 -263681895 - L2 LINE L2 -311 2961 2919 862 157 138 0 chr1 18512342 18512501 -263681163 + MER63B DNA MER1_type 1 181 -255 2487 121 3 3 chr1 18512537 18512892 -263680772 + THE1B LTR MaLR 1 355 -9 232 192 135 0 chr1 18512925 18513029 -263680635 + MER63B DNA MER1_type 190 307 -127 2078 145 10 0 chr1 18513193 18513497 -263680167 + AluSx SINE Alu 1 307 -5 1926 139 10 7 chr1 18513497 18513791 -263679873 + AluSq SINE Alu 1 295 -18 966 157 50 0 chr1 18513795 18513954 -263679710 + AluSg/x SINE Alu 136 302 -8 1599 171 72 16 chr1 18513954 18514275 -263679389 - LTR8A LTR ERV1 -345 382 44 450 0 0 0 chr1 18514281 18514331 -263679333 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 2157 94 14 0 chr1 18514332 18514609 -263679055 - AluSp SINE Alu -32 281 1 883 153 0 8 chr1 18514611 18514742 -263678922 - AluJo SINE Alu -178 134 5 2545 76 0 0 chr1 18514750 18515051 -263678613 - AluSp SINE Alu -12 301 1 600 220 31 122 chr1 18515072 18515358 -263678306 + MER39 LTR ERV1 76 532 -175 1847 179 3 3 chr1 18515379 18515691 -263677973 - AluSx SINE Alu 0 312 1 2072 143 3 3 chr1 18515696 18515997 -263677667 - AluSx SINE Alu -11 301 1 3414 132 16 44 chr1 18516017 18516507 -263677157 - L1PB3 LINE L1 -3 6151 5649 1718 122 107 19 chr1 18516507 18516777 -263676887 - AluSx SINE Alu -18 294 1 3414 132 16 44 chr1 18516777 18516850 -263676814 - L1PB3 LINE L1 -505 5649 5604 3349 74 11 9 chr1 18516850 18517307 -263676357 + LTR22A LTR ERVK 1 458 0 3414 132 16 44 chr1 18517307 18517354 -263676310 - L1PB3 LINE L1 -550 5604 5557 3380 142 14 12 chr1 18517405 18518008 -263675656 - L1PB3 LINE L1 -599 5555 4948 2370 108 3 0 chr1 18518008 18518314 -263675350 - AluSx SINE Alu -5 307 1 3380 142 14 12 chr1 18518314 18518624 -263675040 - L1PB3 LINE L1 -1206 4948 4640 1362 113 0 0 chr1 18518624 18518798 -263674866 - AluSc SINE Alu -4 305 129 2405 92 0 0 chr1 18518798 18519102 -263674562 - AluY SINE Alu -7 304 1 1362 113 0 0 chr1 18519102 18519113 -263674551 - AluSc SINE Alu -179 130 120 1890 206 10 48 chr1 18519113 18519296 -263674368 - L1PB3 LINE L1 -1516 4630 4441 2249 124 0 16 chr1 18519296 18519610 -263674054 - AluSx SINE Alu -3 309 1 1890 206 10 48 chr1 18519610 18519651 -263674013 - L1PB3 LINE L1 -1705 4441 4400 809 119 8 22 chr1 18519651 18519785 -263673879 + FLAM_C SINE Alu 1 132 -1 1890 206 10 48 chr1 18519785 18520078 -263673586 - L1PB3 LINE L1 -1746 4400 4132 549 233 27 7 chr1 18520078 18520224 -263673440 + MER39 LTR ERV1 536 684 -23 689 136 11 164 chr1 18520232 18520409 -263673255 + AluSg/x SINE Alu 134 283 -29 302 0 26 0 chr1 18520409 18520447 -263673217 + (CA)n Simple_repeat Simple_repeat 2 40 0 2477 91 0 0 chr1 18520645 18520953 -263672711 - AluSg SINE Alu -2 308 1 247 325 60 0 chr1 18521041 18521158 -263672506 - MIR SINE MIR -66 196 73 930 247 116 45 chr1 18521824 18522205 -263671459 + MLT1H LTR MaLR 140 547 -2 2577 65 0 3 chr1 18522259 18522567 -263671097 - AluY SINE Alu -4 307 1 1232 99 6 0 chr1 18522827 18522988 -263670676 - AluSx SINE Alu -150 162 1 620 117 0 109 chr1 18522990 18523127 -263670537 - MER34B LTR ERV1 -433 132 11 2326 93 0 7 chr1 18523276 18523576 -263670088 - AluSp SINE Alu -15 298 1 2169 82 22 87 chr1 18523615 18523836 -263669828 + THE1C LTR MaLR 1 235 -140 2229 78 0 62 chr1 18523836 18524142 -263669522 - AluSg SINE Alu -23 287 1 2040 87 8 4 chr1 18524142 18524407 -263669257 - AluSg SINE Alu -16 294 29 2343 88 3 3 chr1 18524415 18524709 -263668955 - AluSp SINE Alu -19 294 1 2169 82 22 87 chr1 18524709 18524878 -263668786 + THE1C LTR MaLR 241 375 0 1886 162 23 13 chr1 18525013 18525187 -263668477 - AluJb SINE Alu -5 307 127 2193 113 3 0 chr1 18525187 18525478 -263668186 - AluSc SINE Alu -17 292 1 1886 162 23 13 chr1 18525478 18525605 -263668059 - AluJb SINE Alu -185 127 3 886 274 142 50 chr1 18525692 18526117 -263667547 - L2 LINE L2 -55 3217 2832 1862 109 7 86 chr1 18526117 18526265 -263667399 - AluSg SINE Alu -30 280 122 2521 74 0 3 chr1 18526265 18526563 -263667101 - AluSc SINE Alu -12 297 1 1862 109 7 86 chr1 18526563 18526574 -263667090 - AluSg SINE Alu -188 122 112 2643 55 0 3 chr1 18526574 18526882 -263666782 - AluY SINE Alu -4 307 1 1862 109 7 86 chr1 18526882 18527025 -263666639 - AluSg SINE Alu -198 112 1 886 274 142 50 chr1 18527025 18527485 -263666179 - L2 LINE L2 -440 2832 2229 2346 105 0 13 chr1 18527486 18527799 -263665865 + AluSc SINE Alu 1 309 0 212 278 0 102 chr1 18527874 18527982 -263665682 - MIR3 SINE MIR -14 194 98 1655 161 39 36 chr1 18527994 18528330 -263665334 + MER1B DNA MER1_type 1 337 0 1585 162 86 22 chr1 18528334 18528648 -263665016 + MLT1A1 LTR MaLR 14 347 -18 973 186 12 0 chr1 18528772 18528939 -263664725 - AluJb SINE Alu -8 304 136 2058 128 0 32 chr1 18528941 18529253 -263664411 - AluSx SINE Alu -10 302 1 2461 93 0 0 chr1 18529253 18529555 -263664109 - AluSq SINE Alu -11 302 1 802 126 102 47 chr1 18529556 18529771 -263663893 - LTR8A LTR ERV1 -145 582 356 394 117 0 0 chr1 18529773 18529833 -263663831 + AluS SINE Alu 1 60 -248 460 223 96 6 chr1 18529942 18530151 -263663513 + MER34B LTR ERV1 304 517 -25 2332 106 3 0 chr1 18530230 18530533 -263663131 - AluSq SINE Alu -9 304 1 253 298 43 11 chr1 18530550 18530644 -263663020 + MIR SINE MIR 86 182 -80 4198 128 40 40 chr1 18530646 18530663 -263663001 + MER4E LTR ERV1 1 17 -762 2599 60 0 0 chr1 18530663 18530965 -263662699 - AluY SINE Alu -9 302 1 4198 128 40 40 chr1 18530965 18531373 -263662291 + MER4E LTR ERV1 17 429 -350 2204 102 34 0 chr1 18531373 18531668 -263661996 - AluSp SINE Alu -6 307 3 4198 128 40 40 chr1 18531668 18531998 -263661666 + MER4E LTR ERV1 428 757 -22 789 276 29 34 chr1 18532383 18532622 -263661042 - MIR SINE MIR -10 252 15 437 260 90 67 chr1 18532657 18532880 -263660784 - MIR SINE MIR 0 262 35 447 318 47 7 chr1 18532888 18533036 -263660628 - MIR3 SINE MIR -15 193 40 1171 220 16 44 chr1 18533606 18533970 -263659694 + L1MCa LINE L1 891 1244 -5182 815 253 80 37 chr1 18533967 18534008 -263659656 + L1M4 LINE L1 4578 4616 -1530 * 207 0 0 0 chr1 18534008 18534031 -263659633 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2192 105 4 0 chr1 18534034 18534311 -263659353 - AluSp SINE Alu -35 278 1 815 253 80 37 chr1 18534311 18534973 -263658691 + L1M4 LINE L1 4617 5398 -748 546 299 128 16 chr1 18535071 18535322 -263658342 - L1MC/D LINE L1 -2142 5666 5388 288 0 0 0 chr1 18535429 18535461 -263658203 + (CA)n Simple_repeat Simple_repeat 2 33 0 257 245 11 64 chr1 18535516 18535610 -263658054 - L1ME3A LINE L1 -113 6057 5969 300 295 11 0 chr1 18535692 18535787 -263657877 - L1ME3A LINE L1 -239 5931 5836 2039 131 20 17 chr1 18535826 18536124 -263657540 + AluJb SINE Alu 1 299 -13 227 310 0 14 chr1 18536334 18536405 -263657259 - MIR SINE MIR -170 92 23 191 241 0 56 chr1 18536516 18536570 -263657094 - L2 LINE L2 -212 3060 3010 1019 222 68 0 chr1 18537087 18537294 -263656370 - MER58A DNA MER1_type 0 224 4 189 257 194 7 chr1 18537372 18537516 -263656148 - L2 LINE L2 -181 3091 2921 266 233 233 0 chr1 18538205 18538321 -263655343 - MIR SINE MIR -8 254 112 235 268 274 7 chr1 18539331 18539484 -263654180 - L1MC5 LINE L1 -49 7912 7719 2279 113 0 0 chr1 18539598 18539900 -263653764 - AluY SINE Alu -9 302 1 2003 161 0 0 chr1 18539980 18540279 -263653385 - AluJb SINE Alu -13 299 1 288 335 76 0 chr1 18540356 18540541 -263653123 - L1MC4a LINE L1 -1905 5903 5705 228 234 0 62 chr1 18540571 18540635 -263653029 + L2 LINE L2 3254 3313 0 2208 128 3 3 chr1 18540701 18541013 -263652651 - AluSx SINE Alu 0 312 1 303 215 108 0 chr1 18541021 18541114 -263652550 - L1MC4a LINE L1 -460 5661 5559 926 228 4 22 chr1 18541539 18541767 -263651897 + AluJb SINE Alu 79 302 -10 184 190 0 103 chr1 18541897 18541955 -263651709 - MIR SINE MIR -138 70 19 203 250 76 22 chr1 18542458 18542550 -263651114 - L2 LINE L2 -8 3264 3168 348 239 14 6 chr1 18542562 18542697 -263650967 + MER20 DNA MER1_type 1 219 0 1208 144 62 14 chr1 18542747 18542955 -263650709 + AluJb SINE Alu 87 304 -8 216 298 19 58 chr1 18543008 18543112 -263650552 - L2 LINE L2 -173 3099 3000 256 255 10 59 chr1 18543475 18543577 -263650087 + MIR SINE MIR 16 112 -150 27 0 0 0 chr1 18543577 18543604 -263650060 + AT_rich Low_complexity Low_complexity 1 27 0 1894 129 39 3 chr1 18543607 18543893 -263649771 - AluJo SINE Alu -14 298 3 473 278 15 0 chr1 18543895 18544028 -263649636 + MIR SINE MIR 92 226 -36 992 138 32 27 chr1 18544664 18544852 -263648812 - MER53 DNA DNA 0 189 1 436 261 121 24 chr1 18544865 18545030 -263648634 + MIR SINE MIR 2 182 -80 391 229 229 0 chr1 18546073 18546195 -263647469 - MIR3 SINE MIR -22 186 37 2474 78 3 3 chr1 18546250 18546557 -263647107 + AluY SINE Alu 5 311 0 2307 113 0 6 chr1 18547142 18547453 -263646211 + AluSx SINE Alu 1 309 -3 2205 262 128 22 chr1 18548206 18548282 -263645382 + MER45C DNA AcHobo 8 75 -1506 2548 60 3 3 chr1 18548282 18548584 -263645080 - AluSp SINE Alu -11 302 1 2205 262 128 22 chr1 18548584 18549317 -263644347 + MER45C DNA AcHobo 75 903 -50 1935 159 24 3 chr1 18549322 18549617 -263644047 - AluJb SINE Alu -11 301 1 300 309 41 3 chr1 18550353 18550558 -263643106 - MIR SINE MIR -10 252 38 679 224 45 30 chr1 18550653 18550854 -263642810 + MIR SINE MIR 46 249 -13 212 245 19 0 chr1 18552447 18552500 -263641164 - L2 LINE L2 -214 3058 3005 2379 91 3 25 chr1 18552524 18552843 -263640821 - AluSx SINE Alu 0 312 1 458 235 112 18 chr1 18552843 18553013 -263640651 - MER5A DNA MER1_type -3 186 1 227 337 0 0 chr1 18553376 18553459 -263640205 + CT-rich Low_complexity Low_complexity 1 83 0 634 176 0 8 chr1 18556287 18556406 -263637258 - MLT1D LTR MaLR 0 505 388 1107 154 0 0 chr1 18556424 18556580 -263637084 + FRAM SINE Alu 1 154 -22 2167 151 41 44 chr1 18556582 18556733 -263636931 - LTR32 LTR ERVL -27 444 294 2323 95 0 0 chr1 18556733 18557027 -263636637 + AluSg SINE Alu 1 294 -16 2167 151 41 44 chr1 18557027 18557311 -263636353 - LTR32 LTR ERVL -177 294 10 1398 206 63 50 chr1 18557307 18557705 -263635959 - MLT1D LTR MaLR -102 403 1 * 474 275 18 54 chr1 18558225 18558392 -263635272 + MIR SINE MIR 102 262 0 537 289 26 30 chr1 18558884 18559085 -263634579 - MIR SINE MIR -32 230 31 406 240 164 41 chr1 18559089 18559235 -263634429 - MER5B DNA MER1_type 0 178 15 1944 108 4 22 chr1 18559241 18559345 -263634319 + AluSx SINE Alu 32 136 -176 2375 86 0 3 chr1 18559345 18559636 -263634028 + AluSc SINE Alu 1 290 -19 1944 108 4 22 chr1 18559636 18559808 -263633856 + AluSx SINE Alu 136 303 -9 2475 92 0 0 chr1 18560127 18560431 -263633233 + AluY SINE Alu 1 304 -7 387 252 25 157 chr1 18560674 18560776 -263632888 - L1ME3A LINE L1 -285 5885 5771 1981 161 7 0 chr1 18560776 18561075 -263632589 - AluJb SINE Alu -11 301 1 387 252 25 157 chr1 18561075 18561258 -263632406 - L1ME3A LINE L1 -399 5771 5638 975 236 30 93 chr1 18561338 18561736 -263631928 - MLT1J1 LTR MaLR -11 435 63 838 275 28 14 chr1 18562398 18562616 -263631048 + MIR SINE MIR 8 228 -34 2200 114 0 3 chr1 18562817 18563116 -263630548 + AluSc SINE Alu 3 300 -9 1598 109 5 0 chr1 18563949 18564159 -263629505 + AluSq SINE Alu 1 211 -102 198 0 0 0 chr1 18564172 18564194 -263629470 + (TAA)n Simple_repeat Simple_repeat 2 23 0 279 136 0 0 chr1 18564435 18564479 -263629185 - U2 snRNA snRNA -141 47 4 337 205 304 0 chr1 18564517 18564629 -263629035 + MIR SINE MIR 114 259 -3 318 343 10 0 chr1 18564722 18564821 -263628843 - L2 LINE L2 -31 3282 3183 1169 237 146 52 chr1 18564934 18565253 -263628411 + L1ME3A LINE L1 3670 3958 -2188 2169 137 0 0 chr1 18565253 18565546 -263628118 + AluSx SINE Alu 1 293 -19 987 161 16 42 chr1 18565554 18565747 -263627917 + MER5A DNA MER1_type 2 189 0 1169 237 146 52 chr1 18565747 18566003 -263627661 + L1ME3A LINE L1 3964 4195 -1951 1693 186 3 36 chr1 18566003 18566309 -263627355 - AluJo SINE Alu -16 296 1 1169 237 146 52 chr1 18566309 18566581 -263627083 + L1ME3A LINE L1 4195 4607 -1539 571 102 0 97 chr1 18566629 18566815 -263626849 + (GGGGA)n Simple_repeat Simple_repeat 4 171 0 557 270 49 0 chr1 18566815 18567000 -263626664 + L1ME3A LINE L1 4624 4817 -1329 313 262 0 79 chr1 18567010 18567174 -263626490 - L1ME3A LINE L1 -847 5299 5149 31 26 0 0 chr1 18567174 18567212 -263626452 + AT_rich Low_complexity Low_complexity 1 38 0 1130 268 64 5 chr1 18567307 18567740 -263625924 + L1ME3A LINE L1 5352 5815 -355 386 159 0 0 chr1 18567761 18567824 -263625840 - LTR3b LTR ERVK 0 500 438 1690 207 42 53 chr1 18567824 18568258 -263625406 - LTR3 LTR ERVK 0 429 1 501 164 45 0 chr1 18568258 18568368 -263625296 + L1ME3A LINE L1 5837 5951 -219 1521 166 21 32 chr1 18568392 18568676 -263624988 + AluJo SINE Alu 26 306 -6 2507 51 0 7 chr1 18568772 18569067 -263624597 + AluY SINE Alu 11 303 -8 1576 214 84 3 chr1 18569781 18570173 -263623491 + LTR16C LTR ERVL 66 489 -2 236 338 35 50 chr1 18570189 18570361 -263623303 + MIR SINE MIR 23 191 -63 1798 174 22 42 chr1 18570401 18570802 -263622862 + MLT2D LTR ERVL 2 477 -43 492 48 0 0 chr1 18570802 18570865 -263622799 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1798 174 22 42 chr1 18570865 18570890 -263622774 + MLT2D LTR ERVL 477 501 -19 218 250 29 59 chr1 18570890 18570958 -263622706 + L2 LINE L2 3203 3268 -4 546 278 73 21 chr1 18571011 18571190 -263622474 + MIR SINE MIR 2 193 -69 2373 88 3 0 chr1 18571190 18571485 -263622179 + AluSx SINE Alu 1 296 -16 546 278 73 21 chr1 18571485 18571496 -263622168 + MIR SINE MIR 193 202 -60 1091 140 0 0 chr1 18573047 18573197 -263620467 + AluSq SINE Alu 4 153 -160 496 153 0 20 chr1 18573197 18573295 -263620369 + AluSg/x SINE Alu 214 309 0 1540 174 48 14 chr1 18573305 18573372 -263620292 + L1MA9 LINE L1 5716 5779 -533 203 0 0 36 chr1 18573372 18573400 -263620264 + (CA)n Simple_repeat Simple_repeat 2 28 0 1540 174 48 14 chr1 18573400 18573689 -263619975 + L1MA9 LINE L1 5779 6084 -228 940 209 0 0 chr1 18573716 18573917 -263619747 + AluSg/x SINE Alu 107 307 -3 1801 75 0 0 chr1 18574552 18574766 -263618898 + AluSq SINE Alu 92 305 -8 909 142 0 0 chr1 18574766 18574893 -263618771 + AluSg/x SINE Alu 134 260 -52 2692 44 0 63 chr1 18574928 18575293 -263618371 + LTR14A LTR ERVK 3 344 0 1773 129 20 17 chr1 18575299 18575593 -263618071 + MSTA LTR MaLR 134 428 0 775 202 14 62 chr1 18575594 18575802 -263617862 + L1M4 LINE L1 4724 4921 -1225 525 222 32 48 chr1 18575831 18575957 -263617707 - L2 LINE L2 -2 3311 3188 1992 109 0 0 chr1 18576447 18576703 -263616961 - AluSx SINE Alu -1 311 56 397 281 97 77 chr1 18576863 18577059 -263616605 + MIR SINE MIR 4 203 -59 229 201 253 71 chr1 18577134 18577288 -263616376 + MIR SINE MIR 80 261 -1 250 259 0 0 chr1 18577331 18577389 -263616275 + L2 LINE L2 3251 3308 -5 255 31 0 0 chr1 18578379 18578411 -263615253 + (TG)n Simple_repeat Simple_repeat 2 33 0 2111 242 164 42 chr1 18578458 18579548 -263614116 + L2 LINE L2 2074 3312 -1 625 279 23 6 chr1 18579633 18579805 -263613859 + MIR3 SINE MIR 15 189 -19 347 361 24 6 chr1 18579953 18580119 -263613545 + MIR SINE MIR 15 183 -79 413 219 42 85 chr1 18580475 18580675 -263612989 + MIR SINE MIR 21 210 -51 589 218 148 0 chr1 18580708 18580850 -263612814 + MIR SINE MIR 30 192 -70 233 301 96 0 chr1 18580850 18580933 -263612731 + MIR SINE MIR 143 233 -29 320 293 20 20 chr1 18581811 18581910 -263611754 - MIR SINE MIR -77 131 33 475 277 144 5 chr1 18582007 18582202 -263611462 + MIR SINE MIR 41 262 0 225 228 70 18 chr1 18582199 18582256 -263611408 - L2 LINE L2 0 3272 3213 * 2929 134 24 24 chr1 18582308 18582801 -263610863 + LTR15 LTR ERV1 1 493 0 779 233 17 22 chr1 18583365 18583545 -263610119 - MIR SINE MIR -56 206 28 674 140 0 0 chr1 18583760 18583860 -263609804 + AluSg/x SINE Alu 199 298 -11 2052 132 0 33 chr1 18583895 18584037 -263609627 + AluSx SINE Alu 1 146 -166 2323 89 0 3 chr1 18584037 18584330 -263609334 + AluSc SINE Alu 5 296 -13 2052 132 0 33 chr1 18584330 18584491 -263609173 + AluSx SINE Alu 146 294 -18 2450 66 0 10 chr1 18584736 18585041 -263608623 - AluY SINE Alu -9 302 1 417 297 39 0 chr1 18585080 18585208 -263608456 + MIR SINE MIR 87 219 -43 575 205 48 24 chr1 18585223 18585389 -263608275 - MER4C LTR ERV1 0 465 296 2513 86 0 0 chr1 18585394 18585697 -263607967 + AluSq SINE Alu 1 303 -10 1884 97 13 203 chr1 18585734 18586127 -263607537 - MER4A LTR ERV1 -238 426 -40 2314 102 0 3 chr1 18586127 18586432 -263607232 + AluSc SINE Alu 1 304 -5 2355 107 7 3 chr1 18586435 18586743 -263606921 + AluSx SINE Alu 1 309 -3 1884 97 13 203 chr1 18586743 18586871 -263606793 - MER4A LTR ERV1 -512 152 1 199 216 206 41 chr1 18587165 18587262 -263606402 + MIR SINE MIR 22 134 -128 420 283 62 23 chr1 18587729 18587906 -263605758 - MIR SINE MIR -12 250 67 283 200 29 0 chr1 18588444 18588514 -263605150 + (TGAG)n Simple_repeat Simple_repeat 3 74 0 252 211 0 0 chr1 18588525 18588577 -263605087 + L2 LINE L2 3220 3271 -1 2196 132 0 0 chr1 18589328 18589623 -263604041 + AluSx SINE Alu 1 295 -17 2434 53 0 3 chr1 18589624 18589968 -263603696 + AluY SINE Alu 1 343 0 274 210 91 119 chr1 18590092 18590235 -263603429 + MIR SINE MIR 117 255 -7 328 280 13 0 chr1 18590244 18590319 -263603345 + MIR SINE MIR 109 184 -78 822 167 0 0 chr1 18590322 18590442 -263603222 - FLAM_C SINE Alu -23 120 1 2245 78 0 11 chr1 18590504 18590785 -263602879 - AluSg SINE Alu -32 278 1 1142 150 5 60 chr1 18590891 18590956 -263602708 - MER5A DNA MER1_type 0 189 122 1764 157 48 10 chr1 18590956 18591250 -263602414 + AluJo SINE Alu 2 306 -6 1142 150 5 60 chr1 18591250 18591384 -263602280 - MER5A DNA MER1_type -67 122 1 348 260 122 0 chr1 18591489 18591612 -263602052 + MIR SINE MIR 60 197 -65 2565 62 0 10 chr1 18591898 18592204 -263601460 - AluY SINE Alu -8 303 1 704 142 117 0 chr1 18592204 18592324 -263601340 - FLAM_C SINE Alu -8 135 2 1309 178 17 26 chr1 18592505 18592736 -263600928 + AluJb SINE Alu 6 234 -78 2725 131 59 27 chr1 18592775 18592792 -263600872 - MLT1D LTR MaLR 0 505 490 2310 159 15 15 chr1 18592792 18593195 -263600469 - MER57A LTR ERV1 0 403 1 2725 131 59 27 chr1 18593195 18593496 -263600168 - MLT1D LTR MaLR -15 490 163 4711 105 9 0 chr1 18593496 18594125 -263599539 - MER41B LTR ERV1 0 635 1 2725 131 59 27 chr1 18594125 18594294 -263599370 - MLT1D LTR MaLR -342 163 1 651 227 67 0 chr1 18594608 18594758 -263598906 + MIR SINE MIR 77 236 -26 454 229 169 30 chr1 18594953 18595119 -263598545 - MER4C LTR ERV1 0 465 277 1799 92 14 134 chr1 18595135 18595422 -263598242 - MER4A LTR ERV1 -239 425 261 2260 106 0 20 chr1 18595422 18595724 -263597940 + AluSx SINE Alu 1 296 -16 1799 92 14 134 chr1 18595724 18595958 -263597706 - MER4A LTR ERV1 -403 261 1 275 191 16 0 chr1 18596002 18596065 -263597599 + CT-rich Low_complexity Low_complexity 4 67 0 2108 223 79 39 chr1 18596097 18596667 -263596997 - MLT1E LTR MaLR 0 593 1 1672 206 20 0 chr1 18596769 18597075 -263596589 + AluJb SINE Alu 1 312 0 462 286 92 24 chr1 18597164 18597692 -263595972 - L1ME LINE L1 -372 5867 5222 823 138 8 39 chr1 18597718 18597848 -263595816 - FLAM_C SINE Alu -17 126 1 727 271 78 98 chr1 18597924 18598931 -263594733 - L1ME LINE L1 -1078 5137 4151 2048 142 17 0 chr1 18598931 18599220 -263594444 - AluSx SINE Alu -18 294 1 727 271 78 98 chr1 18599220 18599307 -263594357 - L1ME LINE L1 -2064 4151 4064 1276 246 102 68 chr1 18599368 18600121 -263593543 - L1MEc LINE L1 -2882 3333 2608 1726 161 30 33 chr1 18600121 18600420 -263593244 - AluJb SINE Alu -14 298 1 1276 246 102 68 chr1 18600420 18600745 -263592919 - L1MEc LINE L1 -3607 2608 2242 2016 131 0 20 chr1 18600745 18601042 -263592622 - AluSx SINE Alu -1 311 21 1276 246 102 68 chr1 18601042 18601139 -263592525 - L1MEc LINE L1 -3973 2242 2150 1751 173 0 32 chr1 18601228 18601540 -263592124 - AluJo SINE Alu -10 302 1 2050 154 0 3 chr1 18601580 18601879 -263591785 + AluJo SINE Alu 1 298 -14 206 220 9 37 chr1 18602191 18602300 -263591364 + (TTATA)n Simple_repeat Simple_repeat 3 108 0 287 294 0 0 chr1 18602366 18602434 -263591230 - Tigger2a DNA MER2_type 0 434 367 973 66 16 0 chr1 18602434 18602556 -263591108 + AluY SINE Alu 174 297 -14 2302 92 59 3 chr1 18602560 18602918 -263590746 - Tigger2a DNA MER2_type -55 379 2 283 333 26 20 chr1 18602918 18603113 -263590551 - HAL1 LINE L1 -937 1570 1375 387 235 91 15 chr1 18603137 18603269 -263590395 - L1MEc LINE L1 -5975 230 89 2102 198 59 71 chr1 18603544 18604105 -263589559 - MLT2B3 LTR ERVL 0 554 1 481 288 42 63 chr1 18604574 18604765 -263588899 - L2 LINE L2 -5 3308 3122 1276 223 130 69 chr1 18604806 18604852 -263588812 - MLT1D LTR MaLR 0 505 463 2472 79 3 0 chr1 18604852 18605155 -263588509 + AluSq SINE Alu 1 304 -9 1276 223 130 69 chr1 18605155 18605466 -263588198 - MLT1D LTR MaLR -42 463 109 2223 90 0 13 chr1 18605466 18605766 -263587898 - AluSx SINE Alu -16 296 1 1276 223 130 69 chr1 18605766 18605883 -263587781 - MLT1D LTR MaLR -396 109 1 370 345 18 23 chr1 18606282 18606453 -263587211 - L2 LINE L2 -556 2758 2589 283 289 102 53 chr1 18606824 18607128 -263586536 + L2 LINE L2 2952 3270 -2 2171 105 0 0 chr1 18607524 18607819 -263585845 - AluSx SINE Alu -17 295 1 276 295 32 13 chr1 18607895 18608051 -263585613 + MER113 DNA MER1_type? 2 160 -361 206 176 29 59 chr1 18608051 18608076 -263585588 + (TA)n Simple_repeat Simple_repeat 1 25 -41 1810 146 28 3 chr1 18608076 18608364 -263585300 + AluJo SINE Alu 1 295 -17 206 176 29 59 chr1 18608364 18608406 -263585258 + (TA)n Simple_repeat Simple_repeat 25 66 0 776 182 99 17 chr1 18608472 18608653 -263585011 - MIR SINE MIR -21 241 46 1970 102 29 0 chr1 18610342 18610662 -263583002 - AluSx SINE Alu 0 328 1 2212 102 3 0 chr1 18610852 18611156 -263582508 + AluSc SINE Alu 1 305 -4 323 259 35 63 chr1 18611497 18611640 -263582024 - MIR3 SINE MIR -67 141 3 456 301 169 0 chr1 18611737 18611903 -263581761 - MIR SINE MIR -27 235 42 482 293 39 33 chr1 18612173 18612354 -263581310 - MIR SINE MIR 0 262 81 197 322 0 0 chr1 18612521 18612580 -263581084 - L2 LINE L2 0 3272 3214 285 266 124 18 chr1 18613102 18613215 -263580449 - L2 LINE L2 -14 3299 3175 285 98 0 0 chr1 18613255 18613296 -263580368 + (CA)n Simple_repeat Simple_repeat 1 41 0 1090 268 50 17 chr1 18613419 18613946 -263579718 - L2 LINE L2 -36 3277 2736 1932 142 30 0 chr1 18614007 18614310 -263579354 - AluSx SINE Alu 0 312 1 2157 103 0 7 chr1 18614314 18614615 -263579049 - AluSc SINE Alu -10 299 1 209 309 117 0 chr1 18614803 18614897 -263578767 + L2 LINE L2 3168 3272 0 208 326 74 79 chr1 18615832 18615909 -263577755 + MER5A DNA MER1_type 1 77 -112 2134 105 3 3 chr1 18615909 18616204 -263577460 + AluSx SINE Alu 1 295 -17 1623 99 0 5 chr1 18616204 18616426 -263577238 + AluSg/x SINE Alu 84 305 -7 278 25 0 25 chr1 18616430 18616470 -263577194 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 208 326 74 79 chr1 18616470 18616576 -263577088 + MER5A DNA MER1_type 79 189 0 191 294 90 40 chr1 18616660 18616762 -263576902 + MIR SINE MIR 23 118 -144 2405 101 32 9 chr1 18616762 18617109 -263576555 + THE1A LTR MaLR 1 355 0 12642 77 5 2 chr1 18617109 18618685 -263574979 + THE1A-int LTR MaLR 1 1580 0 2458 81 32 9 chr1 18618685 18619032 -263574632 + THE1A LTR MaLR 1 355 0 191 294 90 40 chr1 18619032 18619109 -263574555 + MIR SINE MIR 117 210 -52 2078 103 34 0 chr1 18620161 18620453 -263573211 - AluSp SINE Alu -11 302 1 369 221 13 0 chr1 18620475 18620552 -263573112 + MER116 DNA Mariner 3 80 0 396 301 52 0 chr1 18621820 18621973 -263571691 - MIR SINE MIR 0 262 102 2165 119 7 0 chr1 18622639 18622949 -263570715 + AluSx SINE Alu 1 312 0 659 296 33 0 chr1 18623016 18623256 -263570408 + L2 LINE L2 2807 3054 -259 784 272 64 11 chr1 18623474 18623757 -263569907 + MER113 DNA MER1_type? 138 435 -86 1094 244 15 112 chr1 18623926 18624122 -263569542 - L2 LINE L2 -3 3310 3097 1782 170 3 35 chr1 18624122 18624439 -263569225 + AluJo SINE Alu 2 308 -4 1094 244 15 112 chr1 18624439 18624525 -263569139 - L2 LINE L2 -216 3097 3004 1673 156 3 61 chr1 18624525 18624851 -263568813 + AluJb SINE Alu 1 307 -5 1094 244 15 112 chr1 18624851 18625105 -263568559 - L2 LINE L2 -309 3004 2825 390 262 14 34 chr1 18625152 18625456 -263568208 + G-rich Low_complexity Low_complexity 1 297 0 586 287 244 32 chr1 18625472 18626371 -263567293 - L2 LINE L2 -419 2895 1807 1225 150 21 47 chr1 18626398 18626632 -263567032 + AluJo SINE Alu 1 228 -84 910 176 104 24 chr1 18626814 18627174 -263566490 + MLT1D LTR MaLR 2 446 -59 1784 127 23 33 chr1 18627174 18627473 -263566191 + AluSx SINE Alu 1 296 -16 225 309 29 0 chr1 18628042 18628110 -263565554 + MIR SINE MIR 8 77 -185 742 257 228 5 chr1 18628112 18628485 -263565179 - L2 LINE L2 -2 3311 2856 2080 95 46 0 chr1 18628486 18628771 -263564893 + AluSx SINE Alu 1 298 -14 279 248 133 29 chr1 18628806 18628911 -263564753 - MIR SINE MIR -122 140 25 541 278 122 50 chr1 18629750 18630128 -263563536 - L2 LINE L2 -2 3270 2866 2080 116 0 3 chr1 18630390 18630683 -263562981 - AluSg SINE Alu -18 292 1 2277 95 0 0 chr1 18630867 18631172 -263562492 + AluSg SINE Alu 1 305 -5 2243 104 0 0 chr1 18631182 18631479 -263562185 + AluSx SINE Alu 1 297 -15 26 23 0 23 chr1 18631485 18631502 -263562162 + AT_rich Low_complexity Low_complexity 1 17 -26 2485 39 7 3 chr1 18631502 18631812 -263561852 + AluY SINE Alu 1 311 0 26 23 0 23 chr1 18631812 18631838 -263561826 + AT_rich Low_complexity Low_complexity 17 43 0 257 284 87 24 chr1 18631848 18631975 -263561689 - MIR SINE MIR -9 253 119 203 250 13 26 chr1 18632417 18632493 -263561171 + C-rich Low_complexity Low_complexity 3 77 0 4218 145 49 20 chr1 18632747 18633224 -263560440 - LTR62 LTR ERVK -2 717 212 1973 148 0 3 chr1 18633224 18633527 -263560137 + AluSx SINE Alu 1 302 -10 4218 145 49 20 chr1 18633527 18633746 -263559918 - LTR62 LTR ERVK -507 212 1 182 255 0 0 chr1 18633997 18634048 -263559616 - L2 LINE L2 -234 3079 3029 493 284 142 5 chr1 18634781 18634971 -263558693 - MIR SINE MIR -19 243 28 297 267 0 27 chr1 18635075 18635150 -263558514 - L2 LINE L2 0 3313 3241 221 322 53 33 chr1 18635140 18635292 -263558372 - L2 LINE L2 -181 3091 2937 * 1542 194 23 37 chr1 18635293 18635312 -263558352 + L1PB4 LINE L1 5811 5829 -327 1702 122 93 0 chr1 18635312 18635591 -263558073 + AluJb SINE Alu 1 305 -7 1542 194 23 37 chr1 18635591 18635922 -263557742 + L1PB4 LINE L1 5829 6156 0 322 309 36 9 chr1 18635923 18636033 -263557631 + MIR SINE MIR 34 146 -62 2073 108 34 0 chr1 18636036 18636332 -263557332 - AluSx SINE Alu -5 307 2 1945 116 0 40 chr1 18636334 18636637 -263557027 - AluJb SINE Alu -19 293 3 536 197 41 0 chr1 18637784 18637906 -263555758 + L1MB2 LINE L1 4718 4844 -1302 * 2458 103 210 138 chr1 18637896 18638217 -263555447 + L1MB2 LINE L1 5334 5631 -540 480 221 0 0 chr1 18638217 18638303 -263555361 - FLAM SINE Alu -12 131 46 2458 103 210 138 chr1 18638303 18638341 -263555323 + L1MB2 LINE L1 5631 5665 -506 1443 200 41 10 chr1 18638341 18638462 -263555202 + AluJo SINE Alu 1 117 -195 209 56 0 28 chr1 18638462 18638498 -263555166 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1443 200 41 10 chr1 18638498 18638666 -263554998 + AluJo SINE Alu 117 299 -13 2458 103 210 138 chr1 18638666 18638802 -263554862 + L1MB2 LINE L1 5665 5790 -381 1975 137 0 7 chr1 18638802 18639101 -263554563 + AluSx SINE Alu 1 297 -15 2458 103 210 138 chr1 18639101 18639262 -263554402 + L1MB2 LINE L1 5790 6130 -41 2204 100 3 0 chr1 18639262 18639561 -263554103 + AluSx SINE Alu 1 300 -12 1406 222 124 46 chr1 18640094 18640553 -263553111 - MLT1D LTR MaLR -6 499 5 716 293 111 22 chr1 18640717 18641130 -263552534 - LTR16A LTR ERVL 0 450 1 1663 174 72 20 chr1 18641272 18641453 -263552211 - LTR38B LTR ERV1 0 611 441 2438 87 0 0 chr1 18641453 18641765 -263551899 + AluSx SINE Alu 1 312 0 1663 174 72 20 chr1 18641765 18641972 -263551692 - LTR38B LTR ERV1 -170 441 208 180 0 0 0 chr1 18641979 18641999 -263551665 + (CAT)n Simple_repeat Simple_repeat 2 21 0 871 134 0 0 chr1 18641999 18642118 -263551546 - FLAM_C SINE Alu -190 122 1 1291 101 19 0 chr1 18642118 18642327 -263551337 - LTR38B LTR ERV1 -397 213 1 2096 121 10 0 chr1 18642381 18642688 -263550976 - AluSx SINE Alu -2 310 1 307 241 24 24 chr1 18642730 18642813 -263550851 - L2 LINE L2 -2 3270 3188 377 294 27 54 chr1 18643389 18643573 -263550091 + L1MC4a LINE L1 5770 5948 -1860 902 133 75 6 chr1 18643712 18643885 -263549779 + LTR38B LTR ERV1 1 185 -425 1272 160 14 14 chr1 18644081 18644300 -263549364 + AluJo SINE Alu 85 303 -9 232 283 225 17 chr1 18644509 18644629 -263549035 + MER5A DNA MER1_type 43 187 -2 1714 151 40 0 chr1 18644639 18644917 -263548747 + AluJb SINE Alu 4 292 -20 186 43 0 0 chr1 18645606 18645629 -263548035 + (CAGG)n Simple_repeat Simple_repeat 3 25 0 184 255 82 102 chr1 18645753 18645851 -263547813 + MIR SINE MIR 51 146 -116 270 321 134 0 chr1 18646557 18646691 -263546973 - MIR SINE MIR -54 208 57 2024 127 23 3 chr1 18646701 18647008 -263546656 - AluSq SINE Alu 0 313 1 288 276 48 29 chr1 18647008 18647108 -263546556 - MIR SINE MIR -115 147 46 495 233 50 78 chr1 18647204 18647384 -263546280 + MER5B DNA MER1_type 1 175 -3 2077 124 0 0 chr1 18647560 18647850 -263545814 + AluSq SINE Alu 1 290 -23 189 246 53 18 chr1 18648287 18648344 -263545320 + MIR SINE MIR 4 62 -200 248 286 197 37 chr1 18648854 18649179 -263544485 + L2 LINE L2 1303 1679 -1635 2086 118 10 0 chr1 18649192 18649489 -263544175 - AluSg SINE Alu -10 300 1 1538 79 0 252 chr1 18649521 18649914 -263543750 - AluY SINE Alu -17 294 1 604 213 103 45 chr1 18650070 18650253 -263543411 - FRAM SINE Alu 0 166 2 1094 112 10 76 chr1 18650296 18650493 -263543171 - AluJb SINE Alu -117 195 12 746 316 186 29 chr1 18650690 18651574 -263542090 + L2 LINE L2 2254 3283 -30 2034 144 0 0 chr1 18651815 18652121 -263541543 - AluSx SINE Alu -6 306 1 1558 167 7 59 chr1 18652164 18652328 -263541336 - AluSx SINE Alu -22 290 148 2479 26 7 7 chr1 18652328 18652630 -263541034 - AluY SINE Alu -9 302 1 1558 167 7 59 chr1 18652630 18652771 -263540893 - AluSx SINE Alu -164 148 1 1081 143 0 53 chr1 18653404 18653593 -263540071 - AluSg/x SINE Alu 0 312 134 1934 93 0 15 chr1 18653593 18653862 -263539802 - AluY SINE Alu -21 290 26 292 248 58 51 chr1 18654600 18654737 -263538927 + MIR SINE MIR 74 211 -51 204 354 49 0 chr1 18655475 18655557 -263538107 + MIR SINE MIR 62 147 -61 1541 180 26 26 chr1 18655988 18656299 -263537365 - AluJo SINE Alu -1 311 1 1774 95 40 8 chr1 18656782 18657034 -263536630 + AluSq SINE Alu 1 260 -53 24 0 0 0 chr1 18657042 18657066 -263536598 + AT_rich Low_complexity Low_complexity 1 24 0 1765 146 27 14 chr1 18657084 18657378 -263536286 + AluSx SINE Alu 1 298 -14 356 173 27 40 chr1 18657381 18657456 -263536208 + MER5A DNA MER1_type 114 187 -2 778 184 0 0 chr1 18657529 18657654 -263536010 + FLAM_C SINE Alu 2 126 -17 1539 149 15 11 chr1 18657674 18657936 -263535728 + AluSq SINE Alu 1 263 -50 183 264 91 64 chr1 18657940 18658050 -263535614 - L2 LINE L2 -1324 1990 1878 511 92 0 0 chr1 18658295 18658360 -263535304 + AluJ/FLAM SINE Alu 2 66 -246 478 340 213 11 chr1 18658414 18659115 -263534549 - L2 LINE L2 -2054 1260 419 244 314 85 8 chr1 18659403 18659521 -263534143 + MIR SINE MIR 132 258 -4 1789 174 0 3 chr1 18660378 18660672 -263532992 + AluSx SINE Alu 1 293 -19 1949 104 10 21 chr1 18660683 18660972 -263532692 + AluY SINE Alu 1 286 -25 237 265 68 76 chr1 18662765 18662897 -263530767 - MLT1J2 LTR MaLR -287 163 33 241 292 174 34 chr1 18663212 18663239 -263530425 - L2 LINE L2 -2822 492 470 1989 112 7 7 chr1 18663239 18663533 -263530131 + AluSq SINE Alu 7 300 -13 2227 87 3 13 chr1 18663535 18663834 -263529830 + AluSx SINE Alu 2 297 -15 241 292 174 34 chr1 18663834 18663981 -263529683 - L2 LINE L2 -2844 470 290 2113 126 0 0 chr1 18664435 18664736 -263528928 - AluSx SINE Alu -11 301 1 850 161 20 20 chr1 18664873 18665022 -263528642 + AluSg/x SINE Alu 123 271 -39 1791 125 42 7 chr1 18666089 18666377 -263527287 + AluSx SINE Alu 1 298 -14 275 341 168 9 chr1 18666515 18666735 -263526929 - L2 LINE L2 -586 2728 2474 1239 129 129 17 chr1 18666751 18666992 -263526672 - AluJb SINE Alu -44 268 1 209 253 53 0 chr1 18667038 18667113 -263526551 - L2 LINE L2 -223 3049 2971 2104 121 16 0 chr1 18668414 18668720 -263524944 - AluSx SINE Alu -1 311 1 2114 122 0 0 chr1 18669321 18669616 -263524048 + AluSx SINE Alu 1 295 -17 368 252 99 9 chr1 18669672 18669783 -263523881 + MER5A DNA MER1_type 9 129 -60 195 286 52 0 chr1 18669877 18669954 -263523710 - MIR SINE MIR -115 147 67 211 378 0 0 chr1 18671261 18671335 -263522329 - MIR SINE MIR -57 151 78 210 350 103 10 chr1 18671658 18671755 -263521909 + MIR SINE MIR 77 182 -80 210 91 0 0 chr1 18671868 18671901 -263521763 + (CCCA)n Simple_repeat Simple_repeat 1 33 0 1988 113 14 0 chr1 18672534 18672816 -263520848 + AluSp SINE Alu 1 286 -27 1379 186 42 33 chr1 18672830 18672972 -263520692 + AluJb SINE Alu 1 140 -172 1726 150 23 10 chr1 18672972 18673278 -263520386 + AluSx SINE Alu 1 310 -2 1379 186 42 33 chr1 18673278 18673441 -263520223 + AluJb SINE Alu 140 309 -3 1790 123 26 0 chr1 18673449 18673718 -263519946 + AluSp SINE Alu 1 276 -37 350 268 237 41 chr1 18676379 18676670 -263516994 + Charlie8 DNA MER1_type 46 393 -2024 359 243 81 9 chr1 18676680 18676791 -263516873 + MIR SINE MIR 111 229 -33 1844 125 26 30 chr1 18676869 18677172 -263516492 + AluSx SINE Alu 1 302 -10 1769 119 53 21 chr1 18677791 18678076 -263515588 + AluSx SINE Alu 1 294 -18 2119 85 21 0 chr1 18678479 18678760 -263514904 + AluSx SINE Alu 1 287 -25 1970 101 18 11 chr1 18678765 18679051 -263514613 + AluSg SINE Alu 1 288 -22 26 0 0 0 chr1 18680021 18680047 -263513617 + AT_rich Low_complexity Low_complexity 1 26 0 2115 98 10 23 chr1 18684512 18684818 -263508846 + AluSx SINE Alu 1 302 -10 739 202 0 0 chr1 18686521 18686650 -263507014 + FLAM_A SINE Alu 1 129 -4 853 123 31 0 chr1 18687068 18687198 -263506466 + AluSq/x SINE Alu 1 134 -178 2035 131 3 10 chr1 18687465 18687779 -263505885 + AluSx SINE Alu 1 312 0 1460 177 58 17 chr1 18687843 18688137 -263505527 - AluJb SINE Alu -6 306 1 2094 120 3 0 chr1 18688648 18688957 -263504707 + AluSg SINE Alu 1 310 0 2224 79 10 3 chr1 18689004 18689296 -263504368 + AluSp SINE Alu 1 294 -19 413 267 109 15 chr1 18690041 18690243 -263503421 - MER112 DNA MER1_type -39 221 1 1802 132 3 50 chr1 18690603 18690922 -263502742 + AluSx SINE Alu 1 304 -8 983 157 99 0 chr1 18691149 18691340 -263502324 - MER2 DNA MER2_type -135 210 1 599 84 0 0 chr1 18691426 18691509 -263502155 - Alu SINE Alu -6 303 221 2392 58 0 0 chr1 18691594 18691889 -263501775 + AluSc SINE Alu 1 295 -14 1977 119 0 14 chr1 18692290 18692575 -263501089 + AluSx SINE Alu 1 281 -31 2134 66 28 21 chr1 18694442 18694729 -263498935 + AluSc SINE Alu 3 291 -18 2311 87 3 3 chr1 18694961 18695272 -263498392 + AluSp SINE Alu 1 311 -2 2102 108 23 0 chr1 18699972 18700277 -263493387 - AluSq SINE Alu 0 313 2 297 223 117 11 chr1 18702150 18702244 -263491420 + MIR SINE MIR 45 148 -60 1488 153 104 0 chr1 18703452 18703720 -263489944 + AluJo SINE Alu 1 296 -16 1860 99 0 8 chr1 18703723 18703975 -263489689 + AluSg SINE Alu 1 250 -60 1611 90 54 5 chr1 18703980 18704202 -263489462 - AluSq SINE Alu -47 266 34 2379 71 0 7 chr1 18704268 18704577 -263489087 + AluY SINE Alu 1 307 -4 198 0 0 0 chr1 18704577 18704599 -263489065 + (TA)n Simple_repeat Simple_repeat 2 23 0 791 174 8 0 chr1 18704602 18704734 -263488930 + AluJo/FLAM SINE Alu 1 133 -169 799 170 7 0 chr1 18704608 18704743 -263488921 + FLAM_C SINE Alu 7 142 -1 2077 90 41 7 chr1 18705033 18705323 -263488341 + AluSq SINE Alu 1 300 -13 1243 97 0 0 chr1 18706029 18706205 -263487459 + AluY SINE Alu 136 311 0 345 341 0 0 chr1 18706206 18706297 -263487367 + L1MC4 LINE L1 6613 6703 -1339 344 357 0 0 chr1 18706209 18706307 -263487357 - L1MC4 LINE L1 -1339 6703 6606 * 2440 201 116 9 chr1 18707366 18708045 -263485619 + MER21B LTR ERV1 40 814 -49 1855 111 30 0 chr1 18708048 18708319 -263485345 + AluSg SINE Alu 1 279 -31 2052 91 0 4 chr1 18708885 18709160 -263484504 + AluSq SINE Alu 34 307 -6 1731 139 3 24 chr1 18709449 18709736 -263483928 + AluSx SINE Alu 14 294 -18 248 250 36 0 chr1 18710320 18710376 -263483288 + MIR SINE MIR 86 143 -119 26 74 0 0 chr1 18710895 18710949 -263482715 + GC_rich Low_complexity Low_complexity 1 54 0 31 44 0 0 chr1 18710988 18711033 -263482631 + GC_rich Low_complexity Low_complexity 1 45 0 35 92 0 0 chr1 18711168 18711266 -263482398 + GC_rich Low_complexity Low_complexity 1 98 0 24 32 0 0 chr1 18711308 18711339 -263482325 + GC_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr1 18711513 18711553 -263482111 + GC_rich Low_complexity Low_complexity 1 40 0 183 156 0 0 chr1 18711576 18711608 -263482056 + (CTG)n Simple_repeat Simple_repeat 3 34 0 46 33 0 0 chr1 18712958 18713018 -263480646 + GC_rich Low_complexity Low_complexity 1 60 0 249 250 24 0 chr1 18713033 18713117 -263480547 + (CCCCG)n Simple_repeat Simple_repeat 1 86 0 475 322 99 59 chr1 18713527 18713831 -263479833 - L2 LINE L2 -1 3271 2956 1315 199 45 42 chr1 18715398 18715709 -263477955 - AluJb SINE Alu 0 312 1 1955 97 61 0 chr1 18715725 18716004 -263477660 - AluSg SINE Alu -14 296 1 1740 179 0 7 chr1 18716135 18716442 -263477222 - AluJo SINE Alu -7 305 1 316 165 0 110 chr1 18716442 18716533 -263477131 + Charlie5 DNA MER1_type 2542 2622 0 210 240 40 0 chr1 18716895 18716945 -263476719 + MIR SINE MIR 205 256 -6 187 317 49 0 chr1 18716969 18717051 -263476613 - MIR SINE MIR -137 125 40 * 274 216 151 86 chr1 18717044 18717085 -263476579 + MER5A DNA MER1_type 35 72 -117 1846 140 0 48 chr1 18717085 18717232 -263476432 + AluJb SINE Alu 1 127 -185 2181 91 7 7 chr1 18717232 18717541 -263476123 + AluSq SINE Alu 1 309 -4 1846 140 0 48 chr1 18717541 18717707 -263475957 + AluJb SINE Alu 127 299 -13 274 216 151 86 chr1 18717707 18717753 -263475911 + MER5A DNA MER1_type 72 114 -75 2316 85 3 3 chr1 18717753 18718060 -263475604 - AluSq SINE Alu -6 307 1 274 216 151 86 chr1 18718060 18718110 -263475554 + MER5A DNA MER1_type 114 182 -7 559 57 38 4 chr1 18718115 18718325 -263475339 + AluSp SINE Alu 1 296 -17 2515 53 0 0 chr1 18718414 18718718 -263474946 + AluY SINE Alu 1 304 -7 261 122 0 0 chr1 18718778 18718819 -263474845 + THE1C LTR MaLR 1 41 -387 2214 74 0 0 chr1 18718819 18719145 -263474519 - AluY SINE Alu 0 326 1 1655 101 29 4 chr1 18719150 18719416 -263474248 - AluSx SINE Alu 0 313 42 1056 110 24 6 chr1 18719416 18719580 -263474084 + THE1C LTR MaLR 209 375 0 2049 104 10 7 chr1 18719999 18720296 -263473368 + AluSc SINE Alu 1 298 -11 2169 111 0 0 chr1 18720429 18720726 -263472938 + AluSx SINE Alu 1 297 -15 495 326 31 31 chr1 18721159 18721263 -263472401 - MIR SINE MIR -17 245 139 2393 125 23 13 chr1 18721263 18721648 -263472016 - MLT1B LTR MaLR -1 389 1 495 326 31 31 chr1 18721648 18721736 -263471928 - MIR SINE MIR -122 140 53 1521 165 86 4 chr1 18721749 18722028 -263471636 - AluJo SINE Alu 0 312 11 1998 118 7 7 chr1 18722035 18722058 -263471606 - AluSp SINE Alu -7 306 284 180 0 0 0 chr1 18722058 18722078 -263471586 + (TG)n Simple_repeat Simple_repeat 1 20 0 1998 118 7 7 chr1 18722078 18722360 -263471304 - AluSp SINE Alu -28 285 1 2228 87 0 0 chr1 18722623 18722961 -263470703 + AluSx SINE Alu 1 338 0 359 260 31 0 chr1 18722983 18723079 -263470585 + U13 snRNA snRNA 4 102 -2 2105 128 0 0 chr1 18723115 18723413 -263470251 + AluSx SINE Alu 10 307 -5 1502 167 22 77 chr1 18723708 18723852 -263469812 + AluJo SINE Alu 1 151 -161 2579 58 0 0 chr1 18723852 18724164 -263469500 + AluSx SINE Alu 1 312 0 1502 167 22 77 chr1 18724164 18724342 -263469322 + AluJo SINE Alu 151 305 -7 2102 107 0 0 chr1 18724473 18724754 -263468910 - AluSg1 SINE Alu -20 289 9 202 254 63 16 chr1 18724817 18724880 -263468784 - MIR3 SINE MIR -52 156 91 1943 134 13 3 chr1 18725347 18725645 -263468019 + AluSx SINE Alu 1 301 -11 2076 104 3 0 chr1 18725647 18725936 -263467728 + AluSg1 SINE Alu 1 290 -19 288 167 17 17 chr1 18726080 18726140 -263467524 - MIR SINE MIR -109 153 94 295 382 7 7 chr1 18726147 18726283 -263467381 + L2 LINE L2 3175 3310 -3 1054 131 5 70 chr1 18726289 18726445 -263467219 + LTR26B LTR ERV1 1 141 -390 1893 133 17 3 chr1 18726445 18726738 -263466926 - AluSx SINE Alu -15 297 1 1054 131 5 70 chr1 18726738 18726795 -263466869 + LTR26B LTR ERV1 141 200 -331 1548 158 10 47 chr1 18726804 18726943 -263466721 + AluSx SINE Alu 5 148 -164 2142 60 14 18 chr1 18726943 18727247 -263466417 + AluY SINE Alu 1 303 0 2257 101 0 0 chr1 18727247 18727554 -263466110 + AluSg SINE Alu 1 307 -3 1843 126 7 17 chr1 18727554 18727848 -263465816 + AluY SINE Alu 1 291 -20 1548 158 10 47 chr1 18727848 18728003 -263465661 + AluSx SINE Alu 145 291 -21 1739 83 38 102 chr1 18728005 18728318 -263465346 + AluSp SINE Alu 1 293 -20 2357 72 7 0 chr1 18728318 18728625 -263465039 + AluSg SINE Alu 1 309 -1 940 170 13 0 chr1 18728625 18728778 -263464886 + LTR26B LTR ERV1 377 531 0 873 150 29 118 chr1 18728964 18729102 -263464562 + MER58 DNA MER1_type 2163 2312 -108 1702 184 7 7 chr1 18729102 18729401 -263464263 + AluSx SINE Alu 2 300 -12 2432 60 0 16 chr1 18729402 18729717 -263463947 + AluY SINE Alu 2 311 0 873 150 29 118 chr1 18729717 18729856 -263463808 + MER58 DNA MER1_type 2311 2417 -3 1245 157 0 51 chr1 18729858 18730034 -263463630 - AluJo SINE Alu -3 309 146 1991 122 24 0 chr1 18730034 18730328 -263463336 - AluSx SINE Alu -11 301 1 1245 157 0 51 chr1 18730328 18730387 -263463277 - AluJo SINE Alu -166 146 86 458 171 126 0 chr1 18730387 18730475 -263463189 + L1ME3A LINE L1 6044 6150 -20 501 84 0 0 chr1 18730475 18730546 -263463118 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 458 171 126 0 chr1 18730546 18730568 -263463096 + L1ME3A LINE L1 6150 6168 -2 1976 164 0 0 chr1 18730572 18730882 -263462782 + AluSx SINE Alu 1 310 -2 2187 104 3 0 chr1 18730882 18731180 -263462484 + AluSp SINE Alu 1 299 -14 2269 75 0 0 chr1 18731193 18731475 -263462189 + AluSq SINE Alu 1 282 -31 2254 86 3 3 chr1 18731475 18731775 -263461889 - AluSq SINE Alu -10 303 1 1247 57 0 0 chr1 18731797 18731955 -263461709 - L1PA4 LINE L1 -1 6154 5997 182 265 103 0 chr1 18732202 18732270 -263461394 + L2 LINE L2 2986 3060 -212 326 265 11 127 chr1 18732292 18732481 -263461183 - MIR SINE MIR -94 168 2 1961 141 0 0 chr1 18732533 18732831 -263460833 + AluSx SINE Alu 1 298 -14 1078 105 0 55 chr1 18732947 18733120 -263460544 - AluSp SINE Alu -14 299 135 2171 92 7 0 chr1 18733120 18733413 -263460251 - AluSx SINE Alu -17 295 1 263 279 30 18 chr1 18733440 18733560 -263460104 - MIR SINE MIR -89 119 3 1914 93 0 8 chr1 18734194 18734453 -263459211 + AluSq SINE Alu 57 313 0 2354 90 0 0 chr1 18734463 18734774 -263458890 + AluY SINE Alu 1 311 0 287 211 0 126 chr1 18734823 18734878 -263458786 - L1ME LINE L1 -459 5662 5622 2157 100 0 13 chr1 18734878 18735188 -263458476 - AluSg SINE Alu -4 306 1 287 211 0 126 chr1 18735188 18735227 -263458437 - L1ME LINE L1 -499 5622 5580 1100 120 10 57 chr1 18735331 18735523 -263458141 + AluSx SINE Alu 3 185 -127 709 119 8 71 chr1 18735687 18735813 -263457851 + AluSx SINE Alu 184 301 -11 199 334 73 11 chr1 18735813 18735916 -263457748 - MIR SINE MIR -84 124 14 294 347 74 17 chr1 18736729 18736905 -263456759 - MIR3 SINE MIR -3 205 20 292 271 233 45 chr1 18737036 18737136 -263456528 - L3 LINE CR1 -16 1561 1428 2168 62 4 4 chr1 18737136 18737434 -263456230 - AluSp SINE Alu 0 312 15 292 271 233 45 chr1 18737434 18737465 -263456199 - L3 LINE CR1 -149 1428 1404 784 269 25 33 chr1 18737486 18737728 -263455936 - MIR SINE MIR -15 247 8 264 279 77 56 chr1 18738293 18738454 -263455210 - MIR SINE MIR -69 139 21 633 170 0 0 chr1 18738910 18739004 -263454660 + FRAM SINE Alu 10 103 -73 2220 111 0 9 chr1 18739025 18739340 -263454324 - AluSx SINE Alu 0 312 1 491 306 166 0 chr1 18739357 18739514 -263454150 - MIR SINE MIR -12 250 68 277 310 30 10 chr1 18739555 18739655 -263454009 - MIR3 SINE MIR -102 106 5 193 358 101 0 chr1 18739668 18739777 -263453887 + MIR SINE MIR 34 153 -55 1888 108 0 99 chr1 18739953 18740277 -263453387 + AluSx SINE Alu 11 302 -10 1227 113 72 0 chr1 18740282 18740317 -263453347 + AluJb SINE Alu 83 114 -198 513 0 0 0 chr1 18740317 18740374 -263453290 + (CA)n Simple_repeat Simple_repeat 2 58 0 1227 113 72 0 chr1 18740374 18740532 -263453132 + AluJb SINE Alu 114 290 -22 270 314 0 48 chr1 18740593 18740698 -263452966 - MIR SINE MIR -131 131 32 352 315 39 0 chr1 18741318 18741445 -263452219 + MIR SINE MIR 22 153 -55 930 129 0 0 chr1 18741474 18741606 -263452058 + FRAM SINE Alu 10 141 -35 222 37 0 0 chr1 18741611 18741638 -263452026 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 18741645 18741666 -263451998 + AT_rich Low_complexity Low_complexity 1 21 0 2044 152 3 0 chr1 18741673 18741983 -263451681 + AluSx SINE Alu 1 311 -1 289 297 91 3 chr1 18742342 18742510 -263451154 + MIR SINE MIR 12 248 -14 1741 167 13 3 chr1 18742574 18742880 -263450784 + AluSx SINE Alu 1 309 -3 1982 146 30 0 chr1 18743808 18744110 -263449554 - AluSx SINE Alu -1 311 1 1574 159 52 11 chr1 18744160 18744462 -263449202 - AluJo SINE Alu 0 313 1 518 104 28 9 chr1 18744482 18744588 -263449076 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 336 343 63 14 chr1 18744588 18744731 -263448933 - L2 LINE L2 0 3272 3123 401 277 43 14 chr1 18744758 18744899 -263448765 + MIR SINE MIR 114 258 -4 229 204 0 0 chr1 18744901 18744950 -263448714 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2142 119 3 0 chr1 18744952 18745254 -263448410 - AluSx SINE Alu -9 303 1 2330 100 0 0 chr1 18745774 18746084 -263447580 - AluSq SINE Alu -3 310 1 204 308 64 0 chr1 18746092 18746170 -263447494 + L2 LINE L2 3187 3269 -3 513 268 24 24 chr1 18746219 18746387 -263447277 + MIR SINE MIR 17 184 -78 356 270 55 115 chr1 18746585 18746685 -263446979 + MIR SINE MIR 63 147 -115 2078 100 40 3 chr1 18746685 18746986 -263446678 + AluSx SINE Alu 1 312 0 356 270 55 115 chr1 18746986 18747085 -263446579 + MIR SINE MIR 147 250 -12 458 223 49 3 chr1 18747418 18747559 -263446105 + MIR SINE MIR 36 186 -75 2144 115 0 0 chr1 18748538 18748834 -263444830 - AluSx SINE Alu -12 300 5 704 196 34 0 chr1 18749129 18749277 -263444387 + MIR SINE MIR 110 262 0 831 134 0 0 chr1 18749289 18749408 -263444256 - FLAM_C SINE Alu -19 124 6 2123 121 0 19 chr1 18749896 18750072 -263443592 - AluSx SINE Alu -3 309 140 2281 75 0 3 chr1 18750072 18750366 -263443298 - AluY SINE Alu -18 293 1 2123 121 0 19 chr1 18750366 18750504 -263443160 - AluSx SINE Alu -172 140 1 2203 112 3 0 chr1 18750527 18750832 -263442832 - AluSx SINE Alu -6 306 1 3621 116 19 17 chr1 18750855 18751381 -263442283 - MER1A DNA MER1_type 0 527 1 345 283 0 53 chr1 18751392 18751505 -263442159 + MIR3 SINE MIR 10 116 -92 413 320 73 56 chr1 18751751 18752092 -263441572 - L2 LINE L2 0 3272 2926 1692 181 13 3 chr1 18752141 18752439 -263441225 + AluJb SINE Alu 1 301 -11 821 255 49 45 chr1 18752658 18752814 -263440850 - MER102b DNA MER1_type -1137 291 132 1634 162 41 3 chr1 18752814 18752982 -263440682 - AluJo SINE Alu -11 301 116 306 0 0 0 chr1 18752982 18753016 -263440648 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1634 162 41 3 chr1 18753016 18753137 -263440527 - AluJo SINE Alu -196 116 1 821 255 49 45 chr1 18753137 18753266 -263440398 - MER102b DNA MER1_type -1296 132 5 211 200 0 0 chr1 18753660 18753678 -263439986 + A-rich Low_complexity Low_complexity 1 18 -27 963 112 0 8 chr1 18753678 18753812 -263439852 + FLAM_C SINE Alu 1 133 0 211 200 0 0 chr1 18753812 18753838 -263439826 + A-rich Low_complexity Low_complexity 17 45 0 826 155 88 0 chr1 18753887 18754035 -263439629 + FRAM SINE Alu 14 174 -2 361 264 0 22 chr1 18754259 18754350 -263439314 + L2 LINE L2 3210 3298 -15 202 206 16 48 chr1 18754408 18754471 -263439193 - L2 LINE L2 -106 3207 3147 244 370 16 8 chr1 18754516 18754643 -263439021 + L2 LINE L2 3166 3293 -20 254 236 115 47 chr1 18754948 18755097 -263438567 + MIR SINE MIR 38 202 -60 345 237 144 10 chr1 18756859 18756956 -263436708 + L2 LINE L2 3204 3313 0 1046 125 0 0 chr1 18757073 18757209 -263436455 + AluSq/x SINE Alu 1 136 -176 2231 126 3 3 chr1 18757210 18757511 -263436153 + AluSx SINE Alu 1 301 -11 900 189 41 18 chr1 18757650 18757819 -263435845 - AluJo/FRAM SINE Alu -7 305 133 2554 63 0 9 chr1 18757819 18758134 -263435530 - AluSx SINE Alu 0 312 1 851 457 79 0 chr1 18758189 18758469 -263435195 + AluSx SINE Alu 1 302 0 1356 124 5 5 chr1 18758912 18759106 -263434558 - AluSg/x SINE Alu -15 295 102 2522 96 0 0 chr1 18759109 18759422 -263434242 - AluSq SINE Alu 0 313 1 2210 95 9 41 chr1 18759428 18759744 -263433920 - AluSq SINE Alu -6 307 2 2519 81 3 0 chr1 18759755 18760064 -263433600 - AluSp SINE Alu -3 310 1 543 181 9 14 chr1 18760064 18760210 -263433454 + LTR56 LTR ERV1 321 467 0 600 124 10 0 chr1 18760216 18760313 -263433351 - AluSg/x SINE Alu -13 296 199 1971 114 0 0 chr1 18760313 18760576 -263433088 + AluSx SINE Alu 50 312 0 464 176 168 24 chr1 18760601 18760726 -263432938 - MER31B LTR ERV1 -7 459 317 467 147 64 103 chr1 18760733 18760889 -263432775 - MER34B LTR ERV1 -10 555 406 2019 138 13 13 chr1 18760911 18761223 -263432441 + AluJb SINE Alu 1 312 0 613 180 14 43 chr1 18761340 18761479 -263432185 + MER58 DNA MER1_type 2283 2417 -3 1336 150 0 52 chr1 18761483 18761656 -263432008 - AluJo SINE Alu -6 306 146 2159 116 24 0 chr1 18761656 18761950 -263431714 - AluSx SINE Alu -11 301 1 1336 150 0 52 chr1 18761950 18762009 -263431655 - AluJo SINE Alu -166 146 86 459 171 126 0 chr1 18762009 18762097 -263431567 + L1ME3A LINE L1 6044 6150 -20 567 96 0 0 chr1 18762097 18762180 -263431484 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 459 171 126 0 chr1 18762180 18762202 -263431462 + L1ME3A LINE L1 6150 6168 -2 2074 164 0 0 chr1 18762206 18762511 -263431153 + AluSx SINE Alu 1 305 -7 2331 104 3 0 chr1 18762513 18762812 -263430852 + AluSp SINE Alu 1 300 -13 2040 134 0 0 chr1 18762825 18763102 -263430562 + AluSx SINE Alu 1 277 -35 1211 78 14 44 chr1 18763102 18763567 -263430097 + MER61-int LTR ERV1 1907 2497 -2720 981 104 0 0 chr1 18763748 18763902 -263429762 + MER61-int LTR ERV1 2486 2639 -2578 2376 96 7 3 chr1 18763902 18764205 -263429459 + AluSg SINE Alu 2 305 -5 398 234 74 11 chr1 18764246 18764421 -263429243 + L2 LINE L2 2807 2992 -321 1790 171 3 13 chr1 18764456 18764761 -263428903 - AluJo SINE Alu -10 302 1 271 222 86 12 chr1 18764865 18764946 -263428718 + L2 LINE L2 3005 3091 -181 227 317 132 24 chr1 18765243 18765410 -263428254 + MIR SINE MIR 31 215 -47 718 219 84 0 chr1 18765414 18765592 -263428072 + MIR SINE MIR 70 262 0 2322 105 0 0 chr1 18765693 18765987 -263427677 - AluSg SINE Alu -14 296 3 1342 103 0 0 chr1 18765989 18766163 -263427501 - AluSg/x SINE Alu -6 304 131 418 202 11 0 chr1 18766263 18766352 -263427312 + Ricksha DNA DNA 3154 3243 -8 206 258 32 16 chr1 18766693 18766755 -263426909 + GA-rich Low_complexity Low_complexity 4 66 0 436 105 26 0 chr1 18766808 18766884 -263426780 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 432 81 0 0 chr1 18817430 18817492 -263376172 + Alu SINE Alu 238 299 -11 327 286 28 99 chr1 18817500 18817533 -263376131 - MLT1I LTR MaLR -46 363 329 2248 86 0 10 chr1 18817533 18817666 -263375998 + AluSg SINE Alu 1 134 -176 2128 112 0 3 chr1 18817666 18817970 -263375694 + AluSg SINE Alu 1 303 -7 2248 86 0 10 chr1 18817970 18818137 -263375527 + AluSg SINE Alu 134 298 -12 1983 113 3 36 chr1 18818139 18818448 -263375216 + AluY SINE Alu 3 301 -10 327 286 28 99 chr1 18818448 18818593 -263375071 - MLT1I LTR MaLR -81 328 195 1909 149 3 0 chr1 18818789 18819090 -263374574 - AluSx SINE Alu -10 302 1 581 264 90 12 chr1 18819120 18819325 -263374339 - MIR SINE MIR -1 261 41 2192 82 3 3 chr1 18819325 18819617 -263374047 - AluSp SINE Alu -21 292 1 581 264 90 12 chr1 18819617 18819639 -263374025 - MIR SINE MIR -221 41 22 830 174 0 8 chr1 18819754 18819886 -263373778 + FLAM_C SINE Alu 1 131 -2 36 53 0 0 chr1 18820129 18820186 -263373478 + AT_rich Low_complexity Low_complexity 1 57 0 620 26 0 0 chr1 18820192 18820270 -263373394 - L1PA3 LINE L1 0 6155 6078 502 266 56 0 chr1 18820298 18820441 -263373223 - MIR SINE MIR -107 155 5 1137 200 79 0 chr1 18820851 18821131 -263372533 - AluSq SINE Alu -1 302 1 498 329 31 4 chr1 18821134 18821359 -263372305 + L2 LINE L2 2308 2538 -776 493 108 0 0 chr1 18821359 18821424 -263372240 - AluJ/FLAM SINE Alu -246 66 2 357 299 136 0 chr1 18821434 18821581 -263372083 + MIR SINE MIR 81 247 -15 2136 117 0 0 chr1 18822175 18822465 -263371199 - AluSx SINE Alu -22 290 1 218 305 0 0 chr1 18822539 18822598 -263371066 + C-rich Low_complexity Low_complexity 2 60 0 2160 126 0 0 chr1 18822737 18823047 -263370617 - AluSx SINE Alu -2 310 1 391 325 44 58 chr1 18823784 18823879 -263369785 + MIR SINE MIR 58 153 -109 846 146 0 0 chr1 18823879 18824002 -263369662 + FLAM_C SINE Alu 1 123 -10 391 325 44 58 chr1 18824002 18824112 -263369552 + MIR SINE MIR 153 260 -2 1011 147 0 6 chr1 18824114 18824277 -263369387 - AluSg/x SINE Alu -12 298 137 419 337 35 25 chr1 18824590 18824789 -263368875 - L2 LINE L2 0 3313 3113 514 283 70 6 chr1 18824930 18825111 -263368553 - MIR SINE MIR -47 215 25 481 252 17 8 chr1 18825603 18825722 -263367942 + MIR SINE MIR 15 134 -128 2021 116 7 7 chr1 18825751 18826043 -263367621 - AluSx SINE Alu -20 292 1 1660 173 3 3 chr1 18826052 18826341 -263367323 - AluJo SINE Alu -23 289 1 2060 123 0 0 chr1 18826375 18826681 -263366983 + AluSx SINE Alu 1 306 0 24 0 0 0 chr1 18826681 18826705 -263366959 + AT_rich Low_complexity Low_complexity 1 24 0 605 278 56 39 chr1 18826893 18827177 -263366487 - MARNA DNA Mariner -39 547 259 2209 88 3 55 chr1 18827422 18827752 -263365912 - AluSp SINE Alu 0 313 1 2249 104 10 0 chr1 18827754 18828062 -263365602 - AluSx SINE Alu -1 311 1 469 202 24 24 chr1 18828756 18828880 -263364784 + MER20 DNA MER1_type 1 124 -95 2165 107 0 19 chr1 18828908 18829225 -263364439 - AluSx SINE Alu -1 311 1 1663 195 20 0 chr1 18829260 18829562 -263364102 - AluJb SINE Alu -4 308 1 204 243 0 0 chr1 18830625 18830662 -263363002 - MIR SINE MIR -193 69 33 317 287 68 12 chr1 18830780 18830945 -263362719 + MIR SINE MIR 25 207 -55 1645 139 68 7 chr1 18830948 18831229 -263362435 - AluSx SINE Alu -5 307 10 2051 124 0 7 chr1 18831281 18831588 -263362076 - AluSx SINE Alu -7 305 1 1084 201 18 27 chr1 18831617 18831841 -263361823 - MER58A DNA MER1_type 0 224 3 2218 109 0 34 chr1 18832135 18832457 -263361207 + AluSx SINE Alu 1 311 -1 2176 81 3 20 chr1 18832509 18832806 -263360858 + AluSp SINE Alu 2 293 -20 367 226 0 21 chr1 18832857 18832950 -263360714 - MIR SINE MIR -51 211 121 1813 148 23 7 chr1 18832953 18833256 -263360408 + AluJb SINE Alu 5 312 0 1369 112 9 40 chr1 18833258 18833482 -263360182 + AluSg/x SINE Alu 83 299 -11 199 334 73 11 chr1 18833482 18833585 -263360079 - MIR SINE MIR -84 124 14 294 347 74 17 chr1 18834398 18834574 -263359090 - MIR3 SINE MIR -3 205 20 292 271 233 45 chr1 18834705 18834805 -263358859 - L3 LINE CR1 -16 1561 1428 2168 62 4 4 chr1 18834805 18835103 -263358561 - AluSp SINE Alu 0 312 15 292 271 233 45 chr1 18835103 18835134 -263358530 - L3 LINE CR1 -149 1428 1404 784 269 25 33 chr1 18835155 18835397 -263358267 - MIR SINE MIR -15 247 8 264 274 72 62 chr1 18835962 18836118 -263357546 - MIR SINE MIR -69 139 33 633 170 0 0 chr1 18836579 18836673 -263356991 + FRAM SINE Alu 10 103 -73 2202 114 0 9 chr1 18836694 18837009 -263356655 - AluSx SINE Alu 0 312 1 491 306 166 0 chr1 18837026 18837183 -263356481 - MIR SINE MIR -12 250 68 277 310 30 10 chr1 18837224 18837324 -263356340 - MIR3 SINE MIR -102 106 5 193 358 101 0 chr1 18837337 18837446 -263356218 + MIR SINE MIR 34 153 -55 1898 102 3 99 chr1 18837622 18837945 -263355719 + AluSx SINE Alu 11 302 -10 1254 108 72 0 chr1 18837950 18837985 -263355679 + AluJb SINE Alu 83 114 -198 567 0 0 0 chr1 18837985 18838048 -263355616 + (CA)n Simple_repeat Simple_repeat 2 64 0 1254 108 72 0 chr1 18838048 18838206 -263355458 + AluJb SINE Alu 114 290 -22 270 314 0 48 chr1 18838267 18838372 -263355292 - MIR SINE MIR -131 131 32 352 315 39 0 chr1 18838992 18839119 -263354545 + MIR SINE MIR 22 153 -55 930 129 0 0 chr1 18839148 18839280 -263354384 + FRAM SINE Alu 10 141 -35 222 37 0 0 chr1 18839285 18839312 -263354352 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 18839319 18839340 -263354324 + AT_rich Low_complexity Low_complexity 1 21 0 2044 152 3 0 chr1 18839347 18839657 -263354007 + AluSx SINE Alu 1 311 -1 289 297 91 3 chr1 18840016 18840184 -263353480 + MIR SINE MIR 12 248 -14 1768 163 10 7 chr1 18840248 18840554 -263353110 + AluSx SINE Alu 1 307 -5 2000 142 30 0 chr1 18841473 18841775 -263351889 - AluSx SINE Alu -1 311 1 1589 163 52 7 chr1 18841825 18842126 -263351538 - AluJo SINE Alu 0 313 1 518 104 28 9 chr1 18842146 18842252 -263351412 + (TCCA)n Simple_repeat Simple_repeat 2 109 0 336 343 63 14 chr1 18842252 18842395 -263351269 - L2 LINE L2 0 3272 3123 401 277 43 14 chr1 18842422 18842563 -263351101 + MIR SINE MIR 114 258 -4 229 204 0 0 chr1 18842565 18842614 -263351050 + (ATG)n Simple_repeat Simple_repeat 2 50 0 2127 123 3 0 chr1 18842616 18842918 -263350746 - AluSx SINE Alu -9 303 1 2322 100 0 0 chr1 18843438 18843747 -263349917 - AluSq SINE Alu -4 309 1 204 308 64 0 chr1 18843755 18843833 -263349831 + L2 LINE L2 3187 3269 -3 513 268 24 24 chr1 18843882 18844050 -263349614 + MIR SINE MIR 17 184 -78 355 265 55 115 chr1 18844248 18844348 -263349316 + MIR SINE MIR 63 147 -115 2064 103 40 3 chr1 18844348 18844649 -263349015 + AluSx SINE Alu 1 312 0 355 265 55 115 chr1 18844649 18844748 -263348916 + MIR SINE MIR 147 250 -12 458 223 49 3 chr1 18845081 18845222 -263348442 + MIR SINE MIR 36 186 -75 2152 114 0 0 chr1 18846209 18846506 -263347158 - AluSx SINE Alu -11 301 5 704 196 34 0 chr1 18846801 18846949 -263346715 + MIR SINE MIR 110 262 0 831 134 0 0 chr1 18846961 18847080 -263346584 - FLAM_C SINE Alu -19 124 6 2123 121 0 19 chr1 18847568 18847744 -263345920 - AluSx SINE Alu -3 309 140 2281 75 0 3 chr1 18847744 18848038 -263345626 - AluY SINE Alu -18 293 1 2123 121 0 19 chr1 18848038 18848176 -263345488 - AluSx SINE Alu -172 140 1 2186 115 3 0 chr1 18848199 18848504 -263345160 - AluSx SINE Alu -6 306 1 3621 116 19 17 chr1 18848527 18849053 -263344611 - MER1A DNA MER1_type 0 527 1 345 283 0 53 chr1 18849064 18849177 -263344487 + MIR3 SINE MIR 10 116 -92 413 320 73 56 chr1 18849423 18849764 -263343900 - L2 LINE L2 0 3272 2926 1692 181 13 3 chr1 18849813 18850111 -263343553 + AluJb SINE Alu 1 301 -11 821 255 49 45 chr1 18850330 18850486 -263343178 - MER102b DNA MER1_type -1137 291 132 1594 169 41 3 chr1 18850486 18850654 -263343010 - AluJo SINE Alu -11 301 116 261 0 0 0 chr1 18850654 18850683 -263342981 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1594 169 41 3 chr1 18850683 18850804 -263342860 - AluJo SINE Alu -196 116 1 821 255 49 45 chr1 18850804 18850933 -263342731 - MER102b DNA MER1_type -1296 132 5 211 200 0 0 chr1 18851327 18851345 -263342319 + A-rich Low_complexity Low_complexity 1 18 -27 963 112 0 8 chr1 18851345 18851479 -263342185 + FLAM_C SINE Alu 1 133 0 211 200 0 0 chr1 18851479 18851505 -263342159 + A-rich Low_complexity Low_complexity 17 45 0 807 162 88 0 chr1 18851554 18851702 -263341962 + FRAM SINE Alu 14 174 -2 361 264 0 22 chr1 18851926 18852017 -263341647 + L2 LINE L2 3210 3298 -15 202 206 16 48 chr1 18852075 18852138 -263341526 - L2 LINE L2 -106 3207 3147 244 370 16 8 chr1 18852183 18852310 -263341354 + L2 LINE L2 3166 3293 -20 254 236 115 47 chr1 18852614 18852763 -263340901 + MIR SINE MIR 38 202 -60 48 72 0 0 chr1 18853268 18853365 -263340299 + GC_rich Low_complexity Low_complexity 1 97 0 365 237 144 10 chr1 18854964 18855061 -263338603 + L2 LINE L2 3204 3313 0 2121 145 0 16 chr1 18855178 18855315 -263338349 + AluSx SINE Alu 1 139 -173 2166 128 3 0 chr1 18855315 18855619 -263338045 + AluSq SINE Alu 1 305 -8 2121 145 0 16 chr1 18855619 18855798 -263337866 + AluSx SINE Alu 139 312 0 1697 174 4 4 chr1 18855800 18856081 -263337583 + AluJo SINE Alu 5 285 -27 187 268 54 0 chr1 18856124 18856180 -263337484 - L2 LINE L2 -4 3268 3210 392 308 26 51 chr1 18856312 18856507 -263337157 - MIR SINE MIR -52 210 21 2148 102 3 0 chr1 18856760 18857065 -263336599 - AluSq SINE Alu 0 306 1 2018 109 3 24 chr1 18857076 18857370 -263336294 - AluSq SINE Alu -25 288 1 234 91 0 0 chr1 18857378 18857411 -263336253 + (TA)n Simple_repeat Simple_repeat 1 33 0 2214 84 0 17 chr1 18857418 18857715 -263335949 - AluSq SINE Alu -21 292 1 22 94 0 0 chr1 18857717 18857781 -263335883 + AT_rich Low_complexity Low_complexity 1 64 0 2364 113 3 3 chr1 18857854 18858209 -263335455 - THE1B LTR MaLR -9 355 1 186 71 0 0 chr1 18858213 18858241 -263335423 + (TG)n Simple_repeat Simple_repeat 2 29 0 797 157 138 0 chr1 18858245 18858404 -263335260 - MER63B DNA MER1_type -255 181 1 182 231 173 0 chr1 18858404 18858456 -263335208 - L2 LINE L2 -64 3249 3189 218 209 0 0 chr1 18858977 18859020 -263334644 + L2 LINE L2 2919 2961 -311 231 182 0 0 chr1 18859040 18859084 -263334580 - L2 LINE L2 -310 2962 2919 483 272 113 41 chr1 18859583 18859778 -263333886 - MIR SINE MIR -45 217 9 263 302 124 0 chr1 18860885 18861014 -263332650 - L1ME4a LINE L1 0 6121 5977 509 292 77 18 chr1 18861091 18861319 -263332345 + MIR SINE MIR 22 261 -1 978 236 114 84 chr1 18861321 18861818 -263331846 - MER34 LTR ERV1 0 542 27 2133 121 16 0 chr1 18861818 18862123 -263331541 - AluSx SINE Alu -2 310 1 978 236 114 84 chr1 18862123 18862151 -263331513 - MER34 LTR ERV1 -515 27 1 819 249 26 97 chr1 18862153 18862193 -263331471 - L2 LINE L2 -68 3245 3204 2085 132 0 0 chr1 18862193 18862497 -263331167 - AluSx SINE Alu -8 304 1 819 249 26 97 chr1 18862497 18862846 -263330818 - L2 LINE L2 -109 3204 2884 205 366 38 53 chr1 18862991 18863122 -263330542 - L2 LINE L2 -4 3268 3140 789 324 132 16 chr1 18863132 18863535 -263330129 - L2 LINE L2 -568 2746 2242 2135 119 3 3 chr1 18863535 18863845 -263329819 + AluSq SINE Alu 1 310 -3 789 324 132 16 chr1 18863845 18864070 -263329594 - L2 LINE L2 -1072 2242 2045 330 338 44 54 chr1 18864070 18864274 -263329390 - MIR SINE MIR -25 237 36 274 315 0 0 chr1 18864371 18864444 -263329220 - L2 LINE L2 -11 3261 3189 238 260 110 27 chr1 18864936 18865009 -263328655 - MIR SINE MIR -92 116 38 241 308 89 14 chr1 18865349 18865512 -263328152 + MIR SINE MIR 3 180 -68 * 601 317 53 18 chr1 18865507 18865575 -263328089 - MIR SINE MIR 0 262 198 1815 141 3 66 chr1 18865575 18865894 -263327770 - AluSx SINE Alu -13 299 1 601 317 53 18 chr1 18865894 18866052 -263327612 - MIR SINE MIR -64 198 28 207 368 14 21 chr1 18866187 18866331 -263327333 - MIR3 SINE MIR -56 152 10 501 284 46 67 chr1 18866337 18866531 -263327133 + MIR3 SINE MIR 18 207 -1 2017 112 0 24 chr1 18866678 18866973 -263326691 + AluJo SINE Alu 9 296 -16 385 304 85 45 chr1 18866994 18867195 -263326469 - MIR SINE MIR -1 261 53 371 263 127 0 chr1 18867579 18867697 -263325967 - MIR3 SINE MIR -22 186 54 1816 172 6 16 chr1 18867839 18868153 -263325511 - AluJo SINE Alu -1 311 1 260 293 0 24 chr1 18868302 18868400 -263325264 + MIR SINE MIR 48 136 -72 225 283 62 9 chr1 18868401 18868514 -263325150 + MER103 DNA DNA 46 164 -2 1877 136 35 0 chr1 18868631 18868917 -263324747 - AluSx SINE Alu -16 296 1 512 282 35 0 chr1 18869566 18869736 -263323928 + MIR3 SINE MIR 22 197 -11 454 311 5 62 chr1 18869913 18870106 -263323558 - MER5A DNA MER1_type -1 188 7 1043 201 6 0 chr1 18870137 18870311 -263323353 + FAM SINE Alu 1 175 0 2209 121 0 6 chr1 18870322 18870636 -263323028 + AluSx SINE Alu 1 312 0 419 338 0 21 chr1 18870755 18870900 -263322764 - MER5A DNA MER1_type -2 187 46 978 211 0 0 chr1 18871271 18871553 -263322111 + (TCCA)n Simple_repeat Simple_repeat 1 282 0 496 388 67 7 chr1 18871560 18871859 -263321805 - L2 LINE L2 0 3272 2956 814 254 36 9 chr1 18872333 18872553 -263321111 + MIR SINE MIR 12 237 -25 361 303 79 7 chr1 18872640 18872792 -263320872 + MIR SINE MIR 31 193 -69 264 346 74 31 chr1 18873429 18873591 -263320073 - MIR SINE MIR -73 189 21 2238 99 3 0 chr1 18873833 18874125 -263319539 - AluSp SINE Alu -20 293 1 496 297 132 9 chr1 18874222 18874434 -263319230 + MIR SINE MIR 19 256 -6 206 324 63 18 chr1 18874756 18874867 -263318797 - MIR SINE MIR -59 149 34 401 267 69 0 chr1 18875169 18875285 -263318379 + MIR3 SINE MIR 6 129 -79 201 325 13 26 chr1 18875287 18875364 -263318300 - L2 LINE L2 0 3313 3238 1920 157 0 7 chr1 18875393 18875698 -263317966 + AluJb SINE Alu 1 303 -9 268 300 70 0 chr1 18875723 18875823 -263317841 + MIR SINE MIR 156 262 0 197 254 0 68 chr1 18876052 18876111 -263317553 + L2 LINE L2 3255 3309 -4 316 237 9 79 chr1 18876465 18876495 -263317169 + L2 LINE L2 3191 3222 -91 2046 141 0 0 chr1 18876495 18876794 -263316870 - AluJb SINE Alu -11 301 3 316 237 9 79 chr1 18876794 18876877 -263316787 + L2 LINE L2 3222 3296 -17 243 61 0 0 chr1 18876881 18876914 -263316750 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 388 281 109 8 chr1 18876937 18877065 -263316599 - MIR SINE MIR -108 154 14 222 309 31 21 chr1 18877065 18877162 -263316502 + L3 LINE CR1 1475 1572 -5 868 308 8 8 chr1 18877825 18878072 -263315592 + MIR SINE MIR 6 252 -10 1524 192 68 0 chr1 18878258 18878581 -263315083 - MLT1A1 LTR MaLR -12 353 9 196 323 140 11 chr1 18879141 18879234 -263314430 - L2 LINE L2 -29 3243 3139 1247 146 24 14 chr1 18879420 18879632 -263314032 - MER20 DNA MER1_type -2 217 4 2129 119 0 3 chr1 18880632 18880925 -263312739 - AluSx SINE Alu -20 292 1 464 289 7 20 chr1 18881486 18881638 -263312026 - MIR SINE MIR -6 256 107 368 292 59 15 chr1 18882439 18882574 -263311090 + MIR SINE MIR 38 174 -62 181 271 68 17 chr1 18883250 18883309 -263310355 + L3b LINE CR1 1421 1482 -101 2178 258 162 15 chr1 18883529 18884933 -263308731 - L2 LINE L2 -3 3310 1671 2066 148 0 0 chr1 18884933 18885244 -263308420 - AluSx SINE Alu -1 311 1 2178 258 162 15 chr1 18885244 18885282 -263308382 - L2 LINE L2 -1642 1671 1640 266 279 48 39 chr1 18886084 18886188 -263307476 + L2 LINE L2 3202 3306 -7 276 309 73 1 chr1 18886519 18886655 -263307009 + MIR SINE MIR 59 202 -6 197 139 23 0 chr1 18886983 18887026 -263306638 + GA-rich Low_complexity Low_complexity 1 44 0 255 316 51 0 chr1 18887614 18887693 -263305971 + MIR3 SINE MIR 79 161 -47 318 248 0 74 chr1 18888653 18888774 -263304890 + MER5B DNA MER1_type 45 156 -22 271 338 78 47 chr1 18888782 18889141 -263304523 - L2 LINE L2 -218 3054 2675 243 281 0 16 chr1 18890211 18890275 -263303389 - MIR SINE MIR -183 79 17 246 279 96 29 chr1 18890314 18890418 -263303246 + MIR3 SINE MIR 93 203 -5 2128 113 7 7 chr1 18890447 18890756 -263302908 - AluSx SINE Alu -3 309 1 450 199 37 32 chr1 18890756 18890893 -263302771 - MIR SINE MIR -54 154 36 301 222 38 52 chr1 18891125 18891274 -263302390 + MIR SINE MIR 16 160 -48 1554 154 19 8 chr1 18891826 18892085 -263301579 + AluJo SINE Alu 14 275 -37 289 254 75 45 chr1 18892167 18892301 -263301363 + L1MC4a LINE L1 5798 5935 -1873 2189 110 3 0 chr1 18892429 18892730 -263300934 - AluSx SINE Alu -10 302 1 586 248 220 5 chr1 18892788 18893002 -263300662 + MIR SINE MIR 3 262 0 181 324 143 9 chr1 18894118 18894223 -263299441 + MIR SINE MIR 31 149 -113 2213 101 16 0 chr1 18894443 18894750 -263298914 + AluSx SINE Alu 1 312 0 382 118 79 13 chr1 18894763 18894839 -263298825 + MER53 DNA DNA 109 189 0 540 261 56 11 chr1 18894957 18895137 -263298527 + MIR SINE MIR 2 189 -73 258 341 87 31 chr1 18895990 18896219 -263297445 + L2 LINE L2 2934 3175 -97 1466 163 110 25 chr1 18896355 18896637 -263297027 + AluJb SINE Alu 1 306 -6 262 247 14 27 chr1 18896764 18896837 -263296827 + (TAA)n Simple_repeat Simple_repeat 1 72 0 694 269 93 23 chr1 18896856 18897072 -263296592 - MIR SINE MIR -3 259 29 1063 173 0 0 chr1 18897271 18897433 -263296231 - FRAM SINE Alu -21 155 1 1906 179 0 0 chr1 18897448 18897755 -263295909 - AluJo SINE Alu -5 307 1 1172 280 71 26 chr1 18897804 18898229 -263295435 - L2 LINE L2 -13 3300 2857 207 0 0 0 chr1 18898268 18898291 -263295373 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 287 96 0 chr1 18898658 18898752 -263294912 + MIR3 SINE MIR 11 113 -95 228 330 11 11 chr1 18899154 18899242 -263294422 + (TCCA)n Simple_repeat Simple_repeat 1 88 0 495 310 29 47 chr1 18899338 18899377 -263294287 - MIR SINE MIR -25 237 199 1132 168 32 41 chr1 18899377 18899597 -263294067 + MER20 DNA MER1_type 1 218 -1 495 310 29 47 chr1 18899597 18899784 -263293880 - MIR SINE MIR -63 199 14 184 159 23 23 chr1 18900836 18900880 -263292784 + L2 LINE L2 2977 3020 -252 450 0 0 0 chr1 18902260 18902310 -263291354 + (TG)n Simple_repeat Simple_repeat 2 51 0 310 299 122 15 chr1 18902460 18902606 -263291058 + MIR SINE MIR 2 161 -47 269 255 50 113 chr1 18903911 18904052 -263289612 + L2 LINE L2 3180 3311 -2 2017 130 3 3 chr1 18904115 18904423 -263289241 + AluSx SINE Alu 1 308 -4 634 243 40 50 chr1 18904615 18904649 -263289015 - MIR SINE MIR -32 230 197 1903 156 3 13 chr1 18904649 18904819 -263288845 - AluJb SINE Alu -8 304 137 2226 86 10 3 chr1 18904819 18905120 -263288544 - AluSq SINE Alu -10 303 1 1903 156 3 13 chr1 18905120 18905256 -263288408 - AluJb SINE Alu -175 137 1 634 243 40 50 chr1 18905256 18905423 -263288241 - MIR SINE MIR -65 197 31 206 294 92 46 chr1 18906678 18906713 -263286951 - MIR SINE MIR -55 207 175 2162 190 62 56 chr1 18906713 18907214 -263286450 + MLT1D LTR MaLR 1 504 -1 206 294 92 46 chr1 18907214 18907287 -263286377 - MIR SINE MIR -87 175 94 542 330 72 4 chr1 18907548 18907784 -263285880 - MIR SINE MIR -1 261 10 341 301 29 87 chr1 18907809 18907886 -263285778 + MIR SINE MIR 51 131 -131 2096 108 13 23 chr1 18907886 18908193 -263285471 - AluSx SINE Alu -8 304 1 341 301 29 87 chr1 18908193 18908288 -263285376 + MIR SINE MIR 131 213 -49 506 265 181 84 chr1 18908437 18908686 -263284978 - L1ME4a LINE L1 -1 6120 5848 523 266 36 14 chr1 18909173 18909312 -263284352 - MIR SINE MIR -27 235 94 304 285 234 0 chr1 18909298 18909456 -263284208 - MIR SINE MIR -48 214 20 * 311 256 226 15 chr1 18909479 18909612 -263284052 + MER5B DNA MER1_type 4 164 -14 196 158 79 0 chr1 18909612 18909650 -263284014 + MIR3 SINE MIR 155 195 -13 1021 94 0 82 chr1 18910167 18910337 -263283327 + AluSx SINE Alu 1 156 -156 263 274 24 24 chr1 18911029 18911113 -263282551 + MIR SINE MIR 14 97 -165 2277 137 3 62 chr1 18911444 18911511 -263282153 - MLT1A1 LTR MaLR 0 365 296 2076 137 0 0 chr1 18911511 18911804 -263281860 - AluSx SINE Alu -13 299 7 2277 137 3 62 chr1 18911804 18912124 -263281540 - MLT1A1 LTR MaLR -69 296 1 459 284 60 51 chr1 18912299 18912470 -263281194 + MIR SINE MIR 15 190 -72 1968 137 40 0 chr1 18912470 18912770 -263280894 + AluSx SINE Alu 1 312 0 459 284 60 51 chr1 18912770 18912813 -263280851 + MIR SINE MIR 190 231 -31 860 231 16 0 chr1 18913230 18913412 -263280252 - MER3 DNA MER1_type 0 209 25 313 319 11 0 chr1 18913456 18913550 -263280114 + MIR SINE MIR 21 115 -147 1989 238 41 69 chr1 18913834 18914181 -263279483 - L1MD3 LINE L1 -2 7993 7673 2259 114 0 0 chr1 18914181 18914488 -263279176 + AluSx SINE Alu 6 312 0 1989 238 41 69 chr1 18914488 18914824 -263278840 - L1MD3 LINE L1 -322 7673 7329 1953 158 7 0 chr1 18914852 18915155 -263278509 - AluSx SINE Alu -7 305 1 316 321 154 15 chr1 18915940 18916345 -263277319 - L2 LINE L2 -236 3036 2578 238 320 39 12 chr1 18917162 18917290 -263276374 + MIR SINE MIR 15 146 -62 220 258 0 32 chr1 18917624 18917686 -263275978 - MIR SINE MIR -133 75 16 191 364 200 0 chr1 18918619 18918729 -263274935 + MIR SINE MIR 61 192 -70 347 269 48 0 chr1 18918738 18918842 -263274822 + MIR SINE MIR 106 214 -48 220 310 168 0 chr1 18919538 18919651 -263274013 - MIR SINE MIR -20 242 111 2251 115 0 0 chr1 18919691 18920003 -263273661 - AluSx SINE Alu 0 312 1 22 0 0 0 chr1 18920010 18920032 -263273632 + AT_rich Low_complexity Low_complexity 1 22 0 342 304 94 8 chr1 18920083 18920269 -263273395 - MIR3 SINE MIR -50 212 13 2020 144 0 0 chr1 18920602 18920894 -263272770 + AluJo SINE Alu 1 292 -20 198 0 0 0 chr1 18921439 18921461 -263272203 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 402 306 83 0 chr1 18921609 18921789 -263271875 - MER117 DNA MER1_type -2 195 1 1988 138 6 6 chr1 18922181 18922492 -263271172 - AluSx SINE Alu -1 311 1 218 305 53 46 chr1 18922818 18922949 -263270715 - L2 LINE L2 -15 3257 3126 473 263 53 0 chr1 18923536 18923669 -263269995 - MER5A DNA MER1_type 0 189 50 243 242 25 108 chr1 18924784 18924904 -263268760 - MIR SINE MIR -53 209 100 501 62 0 0 chr1 18924943 18925008 -263268656 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 509 252 189 18 chr1 18925039 18925261 -263268403 - MIR SINE MIR 0 262 3 279 0 0 0 chr1 18925387 18925418 -263268246 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 380 299 30 6 chr1 18925440 18925516 -263268148 + (TCCA)n Simple_repeat Simple_repeat 4 77 -97 822 221 96 40 chr1 18925516 18925715 -263267949 - MER63A DNA MER1_type 0 210 1 380 299 30 6 chr1 18925715 18925805 -263267859 + (TCCA)n Simple_repeat Simple_repeat 77 174 0 243 229 0 0 chr1 18925836 18925897 -263267767 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 283 356 22 0 chr1 18925910 18926045 -263267619 + (TCCA)n Simple_repeat Simple_repeat 3 140 0 244 290 129 0 chr1 18926049 18926142 -263267522 - L2 LINE L2 0 3272 3168 470 290 8 15 chr1 18926854 18926985 -263266679 - MER5A DNA MER1_type -4 185 56 575 326 12 6 chr1 18927174 18927346 -263266318 + MIR SINE MIR 15 187 -75 186 308 56 56 chr1 18927481 18927588 -263266076 - MIR SINE MIR -154 108 2 978 221 50 0 chr1 18928435 18928634 -263265030 - MER3 DNA MER1_type 0 209 1 285 290 88 20 chr1 18929064 18929213 -263264451 - MIR SINE MIR -62 146 30 223 353 131 19 chr1 18929966 18930286 -263263378 - L2 LINE L2 0 3272 2917 439 326 53 21 chr1 18930310 18930497 -263263167 - MIR SINE MIR -5 257 65 211 374 23 29 chr1 18930482 18930653 -263263011 - L2 LINE L2 -436 2878 2709 * 347 241 13 0 chr1 18930663 18930742 -263262922 - L2 LINE L2 -2 3311 3232 373 237 82 10 chr1 18931095 18931192 -263262472 + MIR SINE MIR 81 184 -78 201 129 0 0 chr1 18931899 18931930 -263261734 + (TCC)n Simple_repeat Simple_repeat 2 32 0 2055 98 3 57 chr1 18933316 18933633 -263260031 + AluSx SINE Alu 1 300 -12 405 209 23 0 chr1 18933800 18933886 -263259778 + MER20 DNA MER1_type 106 193 -26 399 259 28 56 chr1 18934231 18934374 -263259290 + MER5B DNA MER1_type 8 146 -32 278 278 169 68 chr1 18934446 18934641 -263259023 + L3 LINE CR1 1142 1378 -199 2224 113 0 0 chr1 18934641 18934942 -263258722 - AluSx SINE Alu -11 301 1 278 278 169 68 chr1 18934942 18935041 -263258623 + L3 LINE CR1 1378 1466 -111 330 273 153 7 chr1 18936982 18937132 -263256532 + MIR3 SINE MIR 12 183 -25 192 329 58 15 chr1 18937525 18937662 -263256002 + MIR3 SINE MIR 33 175 -33 2335 158 69 2 chr1 18940056 18940537 -263253127 - L1MB3 LINE L1 -35 6148 5636 464 303 24 36 chr1 18941171 18941336 -263252328 + MIR SINE MIR 15 177 -85 2040 120 27 0 chr1 18941646 18941938 -263251726 + AluSx SINE Alu 12 311 -1 312 294 33 0 chr1 18942259 18942351 -263251313 + L3 LINE CR1 1297 1391 -186 445 262 68 44 chr1 18942545 18942587 -263251077 + Charlie8 DNA MER1_type 25 65 -276 1841 142 0 21 chr1 18942587 18942906 -263250758 - AluJb SINE Alu 0 313 1 445 262 68 44 chr1 18942906 18943068 -263250596 + Charlie8 DNA MER1_type 65 235 -106 336 335 108 0 chr1 18944194 18944361 -263249303 + MIR SINE MIR 46 230 -32 598 252 26 0 chr1 18945257 18945408 -263248256 + MER45A DNA AcHobo 24 178 0 322 294 67 17 chr1 18945454 18945573 -263248091 - MIR SINE MIR -61 147 23 181 292 0 0 chr1 18945783 18945831 -263247833 + MIR SINE MIR 104 151 -57 250 304 63 0 chr1 18946347 18946426 -263247238 - L3b LINE CR1 -197 1386 1303 2155 97 3 29 chr1 18946918 18947227 -263246437 - AluSx SINE Alu -7 305 5 202 194 0 0 chr1 18947671 18947707 -263245957 + (CTCA)n Simple_repeat Simple_repeat 1 36 0 183 310 23 35 chr1 18947815 18947902 -263245762 + MIR SINE MIR 51 136 -72 227 320 117 5 chr1 18949021 18949227 -263244437 + L2 LINE L2 2835 3063 -250 411 348 71 9 chr1 18950592 18950802 -263242862 + L2 LINE L2 3077 3299 -14 2317 63 0 20 chr1 18951080 18951383 -263242281 - AluY SINE Alu -14 297 1 251 283 0 0 chr1 18952410 18952470 -263241194 + L2 LINE L2 3254 3313 0 180 316 26 26 chr1 18952645 18952721 -263240943 + L2 LINE L2 3195 3270 -2 325 315 107 0 chr1 18952765 18952914 -263240750 - MIR SINE MIR -74 188 24 238 255 0 0 chr1 18953328 18953375 -263240289 - L2 LINE L2 -5 3267 3221 368 184 0 138 chr1 18954054 18954126 -263239538 + MIR3 SINE MIR 81 135 -73 1166 177 22 9 chr1 18954126 18954352 -263239312 + L1MB7 LINE L1 5956 6184 0 368 184 0 138 chr1 18954352 18954388 -263239276 + MIR3 SINE MIR 135 174 -34 584 318 27 9 chr1 18954460 18954680 -263238984 - MIR SINE MIR -37 225 2 2009 102 29 0 chr1 18954929 18955203 -263238461 + AluY SINE Alu 1 325 0 315 23 23 0 chr1 18955203 18955246 -263238418 + (CAAAA)n Simple_repeat Simple_repeat 2 75 0 2415 92 0 6 chr1 18955276 18955590 -263238074 + AluSx SINE Alu 1 312 0 218 329 24 0 chr1 18955647 18955732 -263237932 - L2 LINE L2 -47 3266 3180 377 307 176 8 chr1 18955840 18956165 -263237499 - L2 LINE L2 -321 2992 2624 355 265 109 41 chr1 18956945 18957092 -263236572 + MIR3 SINE MIR 20 176 -32 567 328 39 26 chr1 18957127 18957356 -263236308 + MIR SINE MIR 2 233 -29 290 359 55 7 chr1 18958028 18958173 -263235491 + MIR3 SINE MIR 48 199 -9 330 331 90 0 chr1 18958442 18958587 -263235077 - MIR SINE MIR -59 203 46 269 329 94 28 chr1 18960380 18960593 -263233071 - L2 LINE L2 -427 2887 2661 363 348 77 23 chr1 18960768 18960989 -263232675 + MIR SINE MIR 21 253 -9 612 331 95 14 chr1 18961121 18961417 -263232247 - L2 LINE L2 0 3313 2994 547 297 7 7 chr1 18961771 18961919 -263231745 - MIR SINE MIR -56 206 59 181 354 10 40 chr1 18962354 18962453 -263231211 + MIR SINE MIR 52 147 -61 409 318 128 9 chr1 18962667 18962878 -263230786 - MIR SINE MIR -12 250 15 531 322 128 37 chr1 18963121 18963707 -263229957 - L2 LINE L2 0 3313 2640 1959 129 10 22 chr1 18963707 18964018 -263229646 + AluJb SINE Alu 1 307 -5 2162 134 0 0 chr1 18964030 18964335 -263229329 + AluSx SINE Alu 1 305 -7 740 269 78 59 chr1 18964411 18964820 -263228844 - MER96B DNA MER1_type 0 417 1 265 341 23 15 chr1 18965985 18966117 -263227547 + MIR SINE MIR 116 248 -14 256 290 20 40 chr1 18966568 18966668 -263226996 + MIR SINE MIR 162 259 -3 574 294 19 6 chr1 18967290 18967450 -263226214 + MIR3 SINE MIR 15 176 -32 339 253 23 0 chr1 18967832 18967919 -263225745 + MIR SINE MIR 61 149 -59 298 283 17 75 chr1 18968033 18968153 -263225511 - MER5A DNA MER1_type -10 179 67 200 271 34 0 chr1 18968414 18968473 -263225191 - L2 LINE L2 -5 3267 3207 479 148 11 0 chr1 18968820 18968908 -263224756 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 713 158 7 0 chr1 18968925 18969064 -263224600 + (TCCA)n Simple_repeat Simple_repeat 2 141 0 205 294 106 0 chr1 18969064 18969149 -263224515 - L2 LINE L2 0 3313 3220 181 234 106 0 chr1 18970449 18970496 -263223168 - L3 LINE CR1 -99 1478 1427 281 372 115 8 chr1 18970518 18970752 -263222912 + MIR SINE MIR 1 259 -3 1282 246 124 3 chr1 18971541 18971911 -263221753 - MLT1C LTR MaLR -52 415 1 195 307 53 27 chr1 18971962 18972037 -263221627 - MIR3 SINE MIR -20 188 112 831 323 82 15 chr1 18972183 18972585 -263221079 - L2 LINE L2 -12 3301 2873 188 260 156 0 chr1 18973492 18973569 -263220095 - MIR3 SINE MIR -13 195 107 454 304 123 0 chr1 18973857 18974028 -263219636 + MIR SINE MIR 6 197 -65 411 306 33 0 chr1 18974508 18974629 -263219035 - MIR3 SINE MIR 0 208 84 2159 82 28 0 chr1 18974675 18974957 -263218707 - AluSx SINE Alu -22 290 1 224 366 52 6 chr1 18975478 18975672 -263217992 + MIR3 SINE MIR 3 205 -57 414 256 40 0 chr1 18975696 18975821 -263217843 + MIR SINE MIR 78 207 -55 359 269 83 24 chr1 18975855 18976082 -263217582 - MIR SINE MIR -9 253 11 2168 110 0 7 chr1 18976852 18977160 -263216504 + AluSx SINE Alu 4 309 -3 608 259 9 60 chr1 18977262 18977478 -263216186 - MIR3 SINE MIR -1 207 3 391 306 30 101 chr1 18977478 18977738 -263215926 + L2 LINE L2 3032 3272 0 218 239 14 0 chr1 18977738 18977809 -263215855 + GA-rich Low_complexity Low_complexity 1 72 0 184 301 169 0 chr1 18978895 18978978 -263214686 - MIR3 SINE MIR 0 208 112 2021 192 31 94 chr1 18979219 18979771 -263213893 - MLT2B1 LTR ERVL 0 520 4 209 255 47 66 chr1 18980801 18980907 -263212757 - L2 LINE L2 -37 3235 3132 483 364 22 22 chr1 18981462 18981690 -263211974 + MIR SINE MIR 34 261 -1 1076 197 34 4 chr1 18982868 18983102 -263210562 - MIR SINE MIR -6 256 16 220 217 116 0 chr1 18983222 18983291 -263210373 + L2 LINE L2 3170 3246 -26 270 278 32 136 chr1 18983297 18983642 -263210022 - L2 LINE L2 -42 3230 2922 442 300 96 9 chr1 18984344 18984564 -263209100 + L2 LINE L2 2907 3145 -168 288 269 25 67 chr1 18985307 18985426 -263208238 + L2 LINE L2 3149 3262 -10 233 381 0 0 chr1 18987006 18987103 -263206561 + MIR SINE MIR 141 237 -25 277 325 159 8 chr1 18987283 18987409 -263206255 + MIR SINE MIR 117 261 -1 1880 183 35 12 chr1 18988199 18988538 -263205126 + MER7A DNA MER2_type 2 346 0 504 328 0 0 chr1 18988963 18989143 -263204521 + (TG)n Simple_repeat Simple_repeat 1 180 0 238 400 0 0 chr1 18989242 18989412 -263204252 + (TG)n Simple_repeat Simple_repeat 1 170 0 339 374 0 0 chr1 18989475 18989638 -263204026 + (TG)n Simple_repeat Simple_repeat 1 163 0 285 366 6 0 chr1 18989737 18989901 -263203763 + (TG)n Simple_repeat Simple_repeat 1 165 0 * 312 335 6 6 chr1 18989817 18989993 -263203671 + G-rich Low_complexity Low_complexity 3 178 0 344 329 20 40 chr1 18991157 18991306 -263202358 - MIR SINE MIR -10 252 107 243 0 0 0 chr1 18991527 18991554 -263202110 + (AGCTG)n Simple_repeat Simple_repeat 1 27 0 2208 110 3 0 chr1 18991943 18992244 -263201420 - AluSq SINE Alu -11 302 1 190 280 0 0 chr1 18992691 18992741 -263200923 - MIR SINE MIR -118 144 95 240 283 101 29 chr1 18992903 18992940 -263200724 + MIR SINE MIR 6 39 -223 554 248 9 0 chr1 18992940 18993053 -263200611 + MER81 DNA DNA 1 114 0 240 283 101 29 chr1 18993053 18993153 -263200511 + MIR SINE MIR 39 153 -109 330 299 110 32 chr1 18993243 18993397 -263200267 + MIR SINE MIR 47 212 -50 255 74 0 56 chr1 18993582 18993636 -263200028 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 205 250 38 50 chr1 18994135 18994215 -263199449 - MIR SINE MIR -77 185 107 23 0 0 0 chr1 18994269 18994292 -263199372 + AT_rich Low_complexity Low_complexity 1 23 0 2028 109 42 0 chr1 18994313 18994598 -263199066 - AluSq SINE Alu -16 297 1 1713 303 105 24 chr1 18994607 18995689 -263197975 - L1MC4 LINE L1 0 8042 6873 274 355 135 15 chr1 18995714 18996055 -263197609 - L1MC4a LINE L1 -1150 6658 6277 346 232 12 0 chr1 18996059 18996141 -263197523 - MER58A DNA MER1_type -19 88 6 249 33 0 0 chr1 18997143 18997173 -263196491 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr1 18998349 18998376 -263195288 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 768 272 197 21 chr1 18998716 18999252 -263194412 + L2 LINE L2 2671 3311 -2 347 262 49 49 chr1 18999576 18999698 -263193966 - L1MDa LINE L1 -4041 2499 2378 231 301 150 0 chr1 18999845 18999958 -263193706 - L2 LINE L2 0 3272 3143 311 256 0 12 chr1 19000512 19000598 -263193066 - HAL1 LINE L1 -178 2329 2245 605 247 109 0 chr1 19000742 19000916 -263192748 - MER63A DNA MER1_type -15 195 3 186 314 0 43 chr1 19001414 19001484 -263192180 - MIR3 SINE MIR -133 75 9 332 343 83 22 chr1 19002521 19002702 -263190962 - MIR SINE MIR -48 214 23 270 287 148 0 chr1 19002725 19002847 -263190817 + MIR SINE MIR 51 190 -72 180 103 35 0 chr1 19003063 19003092 -263190572 + CT-rich Low_complexity Low_complexity 3 32 0 294 374 15 46 chr1 19003417 19003612 -263190052 - MIR SINE MIR -55 207 19 * 338 318 38 38 chr1 19003557 19003689 -263189975 + MIR3 SINE MIR 28 159 -49 218 105 26 0 chr1 19005157 19005195 -263188469 + (TA)n Simple_repeat Simple_repeat 1 39 0 304 309 15 66 chr1 19005195 19005291 -263188373 - L1MDa LINE L1 -4384 2154 2028 237 65 0 0 chr1 19005291 19005322 -263188342 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 440 288 124 6 chr1 19005324 19005501 -263188163 - L2 LINE L2 0 3313 3116 785 316 161 16 chr1 19005792 19006462 -263187202 + L2 LINE L2 2273 3043 -229 648 209 7 0 chr1 19006610 19006749 -263186915 - MER3 DNA MER1_type -56 153 14 249 322 35 0 chr1 19006749 19006836 -263186828 + L2 LINE L2 3194 3283 -30 207 296 99 0 chr1 19007223 19007304 -263186360 + MER5A DNA MER1_type 3 91 -98 523 208 152 0 chr1 19007612 19007737 -263185927 - MER7A DNA MER2_type -204 142 1 513 290 35 0 chr1 19007737 19007882 -263185782 - MIR SINE MIR -105 157 8 197 286 0 0 chr1 19008930 19008979 -263184685 + MIR SINE MIR 107 155 -107 2088 99 3 54 chr1 19009381 19009695 -263183969 + AluSx SINE Alu 1 298 -14 276 371 111 19 chr1 19009749 19010064 -263183600 - L2 LINE L2 -1 3271 2928 235 302 23 0 chr1 19011184 19011270 -263182394 + (TG)n Simple_repeat Simple_repeat 2 89 0 495 253 96 6 chr1 19011485 19011663 -263182001 - MER3 DNA MER1_type 0 209 16 296 341 165 6 chr1 19012222 19012392 -263181272 - L2 LINE L2 0 3272 3076 226 321 14 64 chr1 19012796 19012936 -263180728 + MIR SINE MIR 20 152 -56 406 337 72 10 chr1 19013375 19013568 -263180096 - MIR SINE MIR -51 211 7 747 268 145 25 chr1 19013673 19014031 -263179633 - L2 LINE L2 -2 3311 2911 1532 270 168 22 chr1 19014058 19014902 -263178762 - L2 LINE L2 -550 2764 1798 2158 96 17 0 chr1 19015519 19015811 -263177853 - AluSx SINE Alu -15 297 1 588 263 48 0 chr1 19016516 19016702 -263176962 - LTR16C LTR ERVL -22 469 275 1390 213 52 55 chr1 19016993 19017201 -263176463 - MLT1A1 LTR MaLR 0 365 157 2253 100 0 19 chr1 19017201 19017510 -263176154 - AluSx SINE Alu -9 303 1 1390 213 52 55 chr1 19017510 19017667 -263175997 - MLT1A1 LTR MaLR -208 157 1 1898 158 64 25 chr1 19017759 19017936 -263175728 + THE1C LTR MaLR 1 170 -205 2356 76 0 3 chr1 19017936 19018237 -263175427 - AluY SINE Alu -11 300 1 1898 158 64 25 chr1 19018237 19018420 -263175244 + THE1C LTR MaLR 170 375 0 202 333 178 22 chr1 19018477 19018567 -263175097 - L2 LINE L2 -23 3249 3146 373 277 80 0 chr1 19018646 19018783 -263174881 + MIR SINE MIR 34 181 -81 351 105 0 0 chr1 19018984 19019041 -263174623 + (CTGGGG)n Simple_repeat Simple_repeat 1 57 0 1143 164 25 5 chr1 19019436 19019637 -263174027 - AluJo SINE Alu -107 205 1 227 328 0 0 chr1 19020406 19020473 -263173191 + MIR SINE MIR 36 102 -106 482 247 37 26 chr1 19020548 19020710 -263172954 - MIR SINE MIR -62 146 16 436 317 56 0 chr1 19020837 19020979 -263172685 + MIR SINE MIR 111 260 -2 2134 114 7 0 chr1 19021082 19021379 -263172285 - AluSx SINE Alu -12 300 2 393 302 27 34 chr1 19021645 19021794 -263171870 - L2 LINE L2 -4 3268 3121 1819 170 6 3 chr1 19021796 19022131 -263171533 + AluJo SINE Alu 1 336 0 431 307 50 7 chr1 19022225 19022365 -263171299 + MIR SINE MIR 105 250 -12 2008 71 0 8 chr1 19022372 19022662 -263171002 - AluY SINE Alu 0 311 37 555 345 29 13 chr1 19023540 19023608 -263170056 - MIR SINE MIR -2 260 195 2178 158 162 2 chr1 19023608 19024027 -263169637 - LTR19A LTR ERV1 0 486 1 555 345 29 13 chr1 19024027 19024203 -263169461 - MIR SINE MIR -67 195 13 186 313 0 0 chr1 19024474 19024538 -263169126 + L2 LINE L2 3199 3262 -10 515 286 229 30 chr1 19024556 19024996 -263168668 + MLT1H1 LTR MaLR 4 531 -24 863 279 65 40 chr1 19025094 19025539 -263168125 + MLT1K LTR MaLR 122 577 -11 462 281 22 15 chr1 19026491 19026626 -263167038 - MIR3 SINE MIR -59 149 14 353 287 11 0 chr1 19026808 19026895 -263166769 + MIR SINE MIR 36 123 -85 370 308 111 34 chr1 19027038 19027093 -263166571 - MIR SINE MIR -13 249 200 2288 103 6 0 chr1 19027093 19027404 -263166260 - AluSq SINE Alu 0 313 1 370 308 111 34 chr1 19027404 19027556 -263166108 - MIR SINE MIR -62 200 26 270 81 0 0 chr1 19028440 19028477 -263165187 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 344 289 0 21 chr1 19028510 19028607 -263165057 - L2 LINE L2 -29 3284 3190 474 270 104 13 chr1 19028731 19028914 -263164750 - MIR SINE MIR -60 202 6 650 261 18 0 chr1 19029327 19029492 -263164172 - MIR SINE MIR -80 182 15 1720 167 0 46 chr1 19029571 19029895 -263163769 + AluJo SINE Alu 1 309 -3 750 104 8 22 chr1 19030136 19030270 -263163394 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 1933 136 30 0 chr1 19030270 19030572 -263163092 - AluSx SINE Alu -1 311 1 239 313 42 42 chr1 19030640 19030736 -263162928 + L2 LINE L2 3122 3217 -55 300 209 7 122 chr1 19031462 19031601 -263162063 - LTR16A1 LTR ERVL -70 387 265 489 339 66 16 chr1 19031913 19032096 -263161568 - MIR SINE MIR -19 243 52 235 185 0 56 chr1 19032153 19032207 -263161457 - L2 LINE L2 -192 3080 3030 224 370 0 0 chr1 19032254 19032335 -263161329 - L2 LINE L2 -2 3311 3231 439 65 0 0 chr1 19032532 19032594 -263161070 + L1PB1 LINE L1 6089 6150 -1 180 0 0 0 chr1 19032626 19032646 -263161018 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 224 308 77 8 chr1 19032705 19032822 -263160842 - MIR SINE MIR -78 184 60 292 322 17 26 chr1 19033174 19033289 -263160375 + MIR SINE MIR 30 143 -65 218 345 12 24 chr1 19033512 19033596 -263160068 + MIR SINE MIR 50 132 -76 278 316 55 60 chr1 19034169 19034387 -263159277 + MIR SINE MIR 17 233 -29 623 261 20 64 chr1 19034620 19034881 -263158783 - MIR SINE MIR -2 260 5 849 253 56 51 chr1 19034967 19035391 -263158273 - MLT1K LTR MaLR -17 571 130 238 290 43 0 chr1 19035496 19035565 -263158099 - MIR SINE MIR -92 170 99 182 292 42 42 chr1 19035531 19035603 -263158061 + L3 LINE CR1 1371 1442 -135 * 2187 98 0 0 chr1 19035808 19036129 -263157535 + AluSp SINE Alu 1 321 0 355 332 31 26 chr1 19036190 19036383 -263157281 + L1ME LINE L1 5545 5738 -383 679 303 131 0 chr1 19037095 19037316 -263156348 - MIR SINE MIR 0 262 13 381 316 97 0 chr1 19037731 19037886 -263155778 - MIR SINE MIR -42 220 51 2317 101 3 0 chr1 19038098 19038405 -263155259 + AluSq SINE Alu 1 308 -5 422 333 13 7 chr1 19038429 19038579 -263155085 + MIR SINE MIR 3 153 -109 347 263 171 16 chr1 19038637 19038825 -263154839 - MIR SINE MIR -13 249 19 2015 144 0 0 chr1 19039027 19039319 -263154345 - AluSx SINE Alu -20 292 1 261 286 19 38 chr1 19039630 19039735 -263153929 - LTR16C LTR ERVL -2 489 387 2336 186 57 15 chr1 19040073 19040547 -263153117 + LTR42 LTR ERVL 2 495 0 1986 161 0 0 chr1 19040694 19040999 -263152665 - AluSx SINE Alu -7 305 1 1089 90 11 11 chr1 19041083 19041261 -263152403 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 285 75 0 0 chr1 19041264 19041304 -263152360 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 1285 195 46 23 chr1 19041304 19041359 -263152305 - AluJo SINE Alu -2 310 258 2809 76 3 6 chr1 19041359 19041715 -263151949 - THE1A LTR MaLR 0 355 1 1285 195 46 23 chr1 19041715 19041962 -263151702 - AluJo SINE Alu -54 258 1 404 360 27 0 chr1 19041966 19042113 -263151551 - MIR SINE MIR -64 198 48 319 295 20 86 chr1 19042616 19042780 -263150884 - MIR3 SINE MIR -29 179 28 311 286 57 7 chr1 19043261 19043401 -263150263 + MIR3 SINE MIR 59 205 -3 664 313 17 26 chr1 19043667 19043897 -263149767 + MIR SINE MIR 7 234 -28 858 266 100 31 chr1 19043915 19044376 -263149288 + MLT1H LTR MaLR 1 542 0 263 280 51 13 chr1 19044411 19044500 -263149164 + MIR SINE MIR 64 154 -65 413 335 94 0 chr1 19044541 19044732 -263148932 + MIR SINE MIR 33 241 -21 336 178 44 22 chr1 19044732 19044822 -263148842 - MLT1G3 LTR MaLR 0 595 499 485 204 110 37 chr1 19044971 19045174 -263148490 - MLT1G3 LTR MaLR -169 413 149 1972 98 11 0 chr1 19045182 19045446 -263148218 + AluSx SINE Alu 14 280 -32 279 0 0 0 chr1 19045450 19045481 -263148183 + (CA)n Simple_repeat Simple_repeat 2 32 0 1412 65 0 0 chr1 19045482 19045652 -263148012 + AluY SINE Alu 1 170 -141 1517 71 0 38 chr1 19045652 19045864 -263147800 + AluSg/x SINE Alu 105 308 -2 231 246 0 0 chr1 19045958 19046015 -263147649 - MLT1G3 LTR MaLR -459 83 27 269 230 14 54 chr1 19046078 19046152 -263147512 + MIR3 SINE MIR 130 200 -8 469 258 24 16 chr1 19046491 19046615 -263147049 - MIR SINE MIR -136 126 2 407 293 23 26 chr1 19046763 19046956 -263146708 + MIR SINE MIR 15 247 -15 448 316 58 21 chr1 19047648 19047838 -263145826 - MIR SINE MIR -16 246 50 2055 111 0 20 chr1 19047851 19048157 -263145507 + AluSx SINE Alu 13 312 0 415 279 49 0 chr1 19048175 19048297 -263145367 - MIR3 SINE MIR -15 193 66 632 310 57 62 chr1 19048811 19049217 -263144447 + L2 LINE L2 2856 3259 -13 499 367 31 0 chr1 19049623 19049849 -263143815 - MIR SINE MIR -12 250 18 507 366 42 20 chr1 19050861 19051112 -263142552 + MIR SINE MIR 9 262 0 258 243 43 0 chr1 19051151 19051221 -263142443 - MIR SINE MIR -75 133 61 788 157 8 8 chr1 19051221 19051355 -263142309 - AluJo SINE Alu -178 134 1 430 269 0 10 chr1 19051405 19051509 -263142155 + MIR SINE MIR 41 143 -65 299 357 29 14 chr1 19051548 19051688 -263141976 - MIR3 SINE MIR -13 195 54 2312 85 7 0 chr1 19051903 19052208 -263141456 + AluSc SINE Alu 1 307 -2 847 186 114 0 chr1 19052707 19052874 -263140790 - MER5A DNA MER1_type -3 186 1 506 256 85 43 chr1 19052893 19053057 -263140607 - MER5B DNA MER1_type -4 174 4 217 217 165 61 chr1 19053226 19053341 -263140323 - L2 LINE L2 -1 3271 3145 189 0 0 0 chr1 19053724 19053745 -263139919 + (TC)n Simple_repeat Simple_repeat 2 22 0 1829 156 0 7 chr1 19053745 19054034 -263139630 - AluJo SINE Alu -23 289 3 390 74 0 0 chr1 19054628 19054682 -263138982 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 231 276 92 0 chr1 19054707 19054783 -263138881 - L2 LINE L2 -68 3204 3122 203 203 0 0 chr1 19055553 19055599 -263138065 + L3b LINE CR1 1340 1385 -198 2067 123 19 3 chr1 19055599 19055907 -263137757 + AluSq SINE Alu 1 313 0 872 220 56 33 chr1 19056080 19056294 -263137370 - MER58A DNA MER1_type 0 224 6 258 246 0 0 chr1 19056718 19056779 -263136885 + G-rich Low_complexity Low_complexity 4 64 0 389 295 155 36 chr1 19057478 19057671 -263135993 + MIR SINE MIR 6 221 -41 347 273 41 33 chr1 19057837 19057958 -263135706 + L2 LINE L2 3191 3312 -1 438 250 69 0 chr1 19058667 19058783 -263134881 - MIR SINE MIR -79 183 60 257 391 20 20 chr1 19059007 19059158 -263134506 + MIR3 SINE MIR 58 208 0 506 276 59 13 chr1 19059430 19059582 -263134082 + MIR SINE MIR 8 166 -96 3472 65 32 0 chr1 19059582 19060045 -263133619 + LTR8 LTR ERV1 110 587 -104 231 114 0 0 chr1 19060045 19060089 -263133575 + (A)n Simple_repeat Simple_repeat 1 44 0 209 213 115 0 chr1 19060091 19060152 -263133512 + MIR SINE MIR 151 218 -44 1613 160 42 29 chr1 19060230 19060543 -263133121 - MLT1B LTR MaLR -73 317 1 298 289 0 52 chr1 19060543 19060630 -263133034 + Charlie8 DNA MER1_type 191 272 -2145 390 213 138 0 chr1 19060633 19060727 -263132937 + MER81 DNA DNA 1 107 -7 2092 124 7 0 chr1 19060730 19061029 -263132635 - AluSx SINE Alu -8 304 4 277 322 183 0 chr1 19061647 19061762 -263131902 + MIR SINE MIR 28 163 -99 2392 73 0 6 chr1 19061849 19062162 -263131502 - AluY SINE Alu 0 311 1 356 209 0 0 chr1 19062164 19062231 -263131433 - MER5A DNA MER1_type -115 74 8 349 256 6 11 chr1 19062323 19062503 -263131161 + (CAT)n Simple_repeat Simple_repeat 1 179 0 197 207 52 35 chr1 19062555 19062613 -263131051 - MIR SINE MIR -60 148 90 211 299 0 52 chr1 19062649 19062726 -263130938 + MIR3 SINE MIR 11 83 -125 234 211 123 0 chr1 19062746 19062803 -263130861 - MIR3 SINE MIR -28 180 117 612 292 102 38 chr1 19062820 19062959 -263130705 + MIR SINE MIR 1 163 -99 2063 223 70 49 chr1 19062959 19063488 -263130176 + MLT1F LTR MaLR 1 540 -2 612 292 102 38 chr1 19063488 19063584 -263130080 + MIR SINE MIR 163 251 -11 306 50 0 0 chr1 19063869 19063909 -263129755 + (TG)n Simple_repeat Simple_repeat 2 41 0 431 262 48 8 chr1 19064348 19064474 -263129190 - MIR3 SINE MIR -36 172 42 479 294 8 0 chr1 19065071 19065197 -263128467 - MIR SINE MIR -116 146 20 247 387 54 0 chr1 19065222 19065315 -263128349 - L2 LINE L2 -29 3243 3146 244 193 76 109 chr1 19065331 19065450 -263128214 - MLT1I LTR MaLR -17 392 278 432 254 52 46 chr1 19065544 19065717 -263127947 - MLT1H LTR MaLR -328 221 48 585 175 98 28 chr1 19065807 19065950 -263127714 - HsTC2 DNA Tc2 0 1898 1746 706 250 34 0 chr1 19065961 19066137 -263127527 - HsTC2 DNA Tc2 -1715 183 2 516 298 22 57 chr1 19066138 19066287 -263127377 - MIR SINE MIR -12 250 110 2469 183 34 13 chr1 19066287 19066763 -263126901 + MER66B LTR ERV1 1 486 0 516 298 22 57 chr1 19066763 19066841 -263126823 - MIR SINE MIR -152 110 31 378 220 25 59 chr1 19066875 19066993 -263126671 + MIR SINE MIR 113 226 -36 2534 101 25 6 chr1 19067208 19067565 -263126099 - THE1B LTR MaLR 0 364 1 801 225 62 13 chr1 19067622 19067849 -263125815 - L1ME2 LINE L1 0 6164 5927 457 81 0 0 chr1 19067849 19067911 -263125753 + MER101 LTR ERV1 1 62 -412 655 230 0 7 chr1 19067911 19068050 -263125614 + AluJo SINE Alu 2 139 -173 2195 174 19 2 chr1 19068063 19068482 -263125182 + MER101 LTR ERV1 49 474 0 450 204 38 8 chr1 19068482 19068614 -263125050 - L1ME2 LINE L1 -238 5926 5791 825 256 55 23 chr1 19068614 19068993 -263124671 + LTR41 LTR ERVL 3 483 -290 648 216 13 108 chr1 19069866 19070098 -263123566 + LTR41 LTR ERVL 564 773 0 838 204 6 0 chr1 19070447 19070614 -263123050 + AluJo SINE Alu 139 306 -6 307 374 0 0 chr1 19070700 19070823 -263122841 + ERVL LTR ERVL 416 538 -5226 2461 324 69 30 chr1 19071186 19072311 -263121353 + ERVL LTR ERVL 1028 2196 -3568 794 243 89 19 chr1 19072617 19073076 -263120588 + LTR41 LTR ERVL 8 580 -193 655 215 24 102 chr1 19073223 19073469 -263120195 + LTR41 LTR ERVL 540 766 -7 368 247 107 27 chr1 19073476 19073626 -263120038 - L1ME2 LINE L1 -367 5797 5636 929 92 39 15 chr1 19074602 19074732 -263118932 - FLAM_C SINE Alu 0 133 1 253 235 0 0 chr1 19074764 19074815 -263118849 + L2 LINE L2 3210 3260 -12 2204 100 0 0 chr1 19075032 19075332 -263118332 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 19077542 19077564 -263116100 + (TGGGGG)n Simple_repeat Simple_repeat 5 26 0 525 218 9 0 chr1 19077673 19077783 -263115881 + MER20 DNA MER1_type 108 218 -1 198 175 0 0 chr1 19077792 19077832 -263115832 + L2 LINE L2 3265 3304 -9 352 212 12 24 chr1 19078724 19078809 -263114855 + L2 LINE L2 3190 3273 -40 505 289 50 0 chr1 19078843 19079002 -263114662 - MIR SINE MIR -6 256 90 232 304 51 0 chr1 19079804 19079883 -263113781 - MIR SINE MIR -92 116 34 785 262 39 9 chr1 19080008 19080241 -263113423 - MIR SINE MIR -18 244 5 189 0 0 0 chr1 19080329 19080350 -263113314 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 747 278 139 24 chr1 19080350 19080732 -263112932 - L2 LINE L2 -32 3281 2856 310 224 0 15 chr1 19081473 19081540 -263112124 - LTR67 LTR ERVL -3 554 489 227 281 0 37 chr1 19081847 19081929 -263111735 - MLT1K LTR MaLR -485 103 25 450 230 158 20 chr1 19082395 19082547 -263111117 - MIR SINE MIR -25 237 65 298 298 24 48 chr1 19082966 19083067 -263110597 + MIR3 SINE MIR 62 161 -47 575 326 31 65 chr1 19083067 19083420 -263110244 - MER102b DNA MER1_type 0 341 1 298 298 24 48 chr1 19083420 19083442 -263110222 + MIR3 SINE MIR 161 182 -26 22 0 0 0 chr1 19083472 19083494 -263110170 + AT_rich Low_complexity Low_complexity 1 22 0 648 310 36 13 chr1 19084320 19084529 -263109135 + MIR SINE MIR 3 217 -45 2208 130 18 12 chr1 19084529 19084867 -263108797 - MER58B DNA MER1_type 0 341 2 648 310 36 13 chr1 19084867 19084912 -263108752 + MIR SINE MIR 217 259 -3 347 338 103 29 chr1 19084944 19085225 -263108439 + L3 LINE CR1 1171 1472 -105 304 218 68 105 chr1 19086719 19086852 -263106812 + MIR SINE MIR 21 148 -60 503 295 153 0 chr1 19087116 19087299 -263106365 + MIR SINE MIR 51 261 -1 243 241 17 0 chr1 19087798 19087856 -263105808 + L2 LINE L2 3238 3296 -17 651 255 15 5 chr1 19087962 19088162 -263105502 - L2 LINE L2 -257 3056 2855 231 321 28 19 chr1 19088580 19088686 -263104978 - MIR3 SINE MIR -36 172 66 295 236 151 100 chr1 19089039 19089298 -263104366 + L2 LINE L2 1870 2141 -1173 * 298 203 63 146 chr1 19089278 19089436 -263104228 - L2 LINE L2 -98 3174 3030 265 313 43 3 chr1 19089426 19089548 -263104116 - MIR SINE MIR -27 181 50 * 1534 154 3 86 chr1 19090252 19090590 -263103074 - AluJb SINE Alu -2 310 1 485 176 32 32 chr1 19090984 19091109 -263102555 + MER117 DNA MER1_type 20 144 -53 1903 135 10 0 chr1 19091171 19091459 -263102205 - AluSx SINE Alu -21 291 1 419 286 29 14 chr1 19092060 19092200 -263101464 + MIR3 SINE MIR 47 188 -20 248 283 43 0 chr1 19092834 19092926 -263100738 + MIR SINE MIR 38 133 -129 497 282 129 57 chr1 19092953 19093286 -263100378 - MLT1J2 LTR MaLR 0 450 94 1907 139 0 19 chr1 19093386 19093695 -263099969 + AluJo SINE Alu 1 303 -9 280 345 101 0 chr1 19093740 19093888 -263099776 - MIR3 SINE MIR -27 181 19 1379 191 85 116 chr1 19094384 19094690 -263098974 - MLT1C LTR MaLR 0 467 180 2121 123 7 0 chr1 19094690 19095000 -263098664 - AluSx SINE Alu 0 312 1 1379 191 85 116 chr1 19095000 19095175 -263098489 - MLT1C LTR MaLR -287 180 1 271 290 65 24 chr1 19096081 19096205 -263097459 - L1MC/D LINE L1 -1992 5816 5688 1186 87 89 2 chr1 19096633 19096824 -263096840 + THE1B LTR MaLR 1 203 -152 204 339 83 9 chr1 19097382 19097491 -263096173 + MIR SINE MIR 31 147 -115 2268 120 128 13 chr1 19097492 19097875 -263095789 - MSTA LTR MaLR -1 427 1 219 307 92 52 chr1 19098081 19098234 -263095430 - MIR SINE MIR -17 245 87 2268 117 47 33 chr1 19098276 19098635 -263095029 - THE1B LTR MaLR 0 364 1 261 237 26 0 chr1 19098916 19098992 -263094672 + MIR SINE MIR 143 220 -42 2016 240 17 74 chr1 19099217 19099801 -263093863 - MLT1E LTR MaLR 0 593 43 1702 155 19 26 chr1 19100153 19100463 -263093201 - AluJo SINE Alu -4 308 1 919 356 34 38 chr1 19100599 19100734 -263092930 - L1MC4a LINE L1 -1852 5956 5822 1874 121 10 24 chr1 19100734 19101032 -263092632 - AluSx SINE Alu -18 294 1 919 356 34 38 chr1 19101032 19101601 -263092063 - L1MC4a LINE L1 -1986 5822 5255 246 254 45 9 chr1 19102491 19102601 -263091063 + Charlie7 DNA MER1_type 2429 2542 -70 482 299 19 13 chr1 19102911 19103065 -263090599 + L2 LINE L2 3159 3313 0 440 229 115 13 chr1 19103067 19103224 -263090440 - MIR SINE MIR -31 231 59 7447 172 172 12 chr1 19103281 19104794 -263088870 - MER52A LTR ERV1 0 1755 1 411 276 16 8 chr1 19104833 19104960 -263088704 - MIR SINE MIR -123 139 12 217 373 30 8 chr1 19105639 19105773 -263087891 - MIR SINE MIR -15 247 111 370 221 77 42 chr1 19107547 19107694 -263085970 - MIR SINE MIR -71 137 27 * 520 195 189 19 chr1 19107691 19107850 -263085814 + MIR SINE MIR 14 199 -63 316 246 141 80 chr1 19108460 19108822 -263084842 - MLT1J LTR MaLR -34 477 94 220 239 211 28 chr1 19108834 19108943 -263084721 + MIR SINE MIR 108 236 -26 207 156 0 0 chr1 19109673 19109705 -263083959 + GA-rich Low_complexity Low_complexity 1 32 0 279 0 0 0 chr1 19109768 19109799 -263083865 + (TG)n Simple_repeat Simple_repeat 2 32 0 305 291 79 23 chr1 19109893 19110071 -263083593 - MIR SINE MIR -58 150 5 239 317 113 30 chr1 19111093 19111323 -263082341 + MIR SINE MIR 2 250 -12 233 255 108 10 chr1 19112692 19112794 -263080870 - L1ME LINE L1 -620 5546 5435 259 314 75 50 chr1 19113094 19113657 -263080007 - L1MC4a LINE L1 -1032 5114 4538 276 276 81 89 chr1 19113866 19114045 -263079619 - L1MC4a LINE L1 -1896 4250 4074 2182 120 3 10 chr1 19114045 19114354 -263079310 - AluSg SINE Alu -3 307 1 276 276 81 89 chr1 19114354 19114533 -263079131 - L1MC4a LINE L1 -2072 4074 3895 661 230 53 13 chr1 19114584 19114736 -263078928 - MIR SINE MIR -29 233 76 2179 228 161 25 chr1 19114736 19115877 -263077787 - Zaphod DNA AcHobo 0 4031 119 291 54 0 0 chr1 19115877 19115914 -263077750 + (TG)n Simple_repeat Simple_repeat 2 38 0 191 283 33 17 chr1 19115989 19116049 -263077615 - MIR SINE MIR -173 89 29 2246 118 7 7 chr1 19116162 19116467 -263077197 + AluSx SINE Alu 1 305 -7 2766 82 3 43 chr1 19116480 19116824 -263076840 + THE1C LTR MaLR 1 329 -46 1794 150 0 11 chr1 19116824 19117090 -263076574 - AluSq SINE Alu -48 265 3 2766 82 3 43 chr1 19117090 19117136 -263076528 + THE1C LTR MaLR 329 375 0 320 335 64 34 chr1 19117258 19117443 -263076221 + MIR SINE MIR 2 191 -34 342 266 13 44 chr1 19117482 19117640 -263076024 - MLT1K LTR MaLR -40 548 396 248 241 48 24 chr1 19117764 19117847 -263075817 - MLT1L LTR MaLR -340 275 191 678 226 164 93 chr1 19118011 19118068 -263075596 + L2 LINE L2 2606 2658 -655 2215 104 7 29 chr1 19118068 19118375 -263075289 - AluSq SINE Alu -12 301 2 678 226 164 93 chr1 19118375 19118835 -263074829 + L2 LINE L2 2658 3155 -158 2305 99 20 0 chr1 19118835 19119139 -263074525 - AluSg SINE Alu 0 310 1 678 226 164 93 chr1 19119139 19119300 -263074364 + L2 LINE L2 3155 3303 -10 1824 207 49 34 chr1 19120269 19120742 -263072922 - MLT1D LTR MaLR 0 505 26 556 297 99 0 chr1 19120791 19120993 -263072671 + MIR SINE MIR 16 237 -25 3650 70 2 0 chr1 19121004 19121461 -263072203 + L1PA7 LINE L1 5691 6148 -6 550 308 30 26 chr1 19121904 19122138 -263071526 + MIR SINE MIR 13 247 -15 443 285 178 43 chr1 19122553 19122929 -263070735 - L2 LINE L2 0 3313 2887 3322 101 20 14 chr1 19122935 19123422 -263070242 + MER1A DNA MER1_type 40 529 0 602 216 70 40 chr1 19123463 19123662 -263070002 + L2 LINE L2 1630 1834 -1480 560 273 99 13 chr1 19123682 19123986 -263069678 - L1MC4 LINE L1 -29 8013 7684 3096 212 19 49 chr1 19124002 19125323 -263068341 - L1ME1 LINE L1 -24 6536 5168 1717 149 64 30 chr1 19125323 19125619 -263068045 - AluJb SINE Alu -6 306 1 3096 212 19 49 chr1 19125619 19125878 -263067786 - L1ME1 LINE L1 -1392 5168 4903 1663 105 4 45 chr1 19125879 19126126 -263067538 - AluSg/x SINE Alu 0 312 76 877 133 8 0 chr1 19126126 19126254 -263067410 - AluSq/x SINE Alu -184 129 1 3649 241 67 17 chr1 19126254 19127548 -263066116 - L1ME1 LINE L1 -1634 4906 3549 646 141 107 0 chr1 19127554 19127675 -263065989 + MER7A DNA MER2_type 1 132 -214 626 239 8 0 chr1 19127677 19127807 -263065857 + FLAM_C SINE Alu 2 132 -11 418 174 35 0 chr1 19127808 19127894 -263065770 + MER7A DNA MER2_type 115 203 -134 362 171 29 0 chr1 19127911 19127981 -263065683 + MER7A DNA MER2_type 115 186 -151 403 167 0 0 chr1 19128012 19128084 -263065580 + MER7A DNA MER2_type 115 186 -151 422 153 0 0 chr1 19128115 19128187 -263065477 + MER7A DNA MER2_type 124 195 -151 504 97 0 0 chr1 19128218 19128290 -263065374 + MER7A DNA MER2_type 114 185 -151 444 125 0 0 chr1 19128321 19128393 -263065271 + MER7A DNA MER2_type 115 186 -151 427 153 0 0 chr1 19128414 19128486 -263065178 + MER7A DNA MER2_type 114 185 -151 795 124 0 0 chr1 19128517 19128638 -263065026 + MER7A DNA MER2_type 124 244 -102 1623 220 94 56 chr1 19128638 19129423 -263064241 - L1ME1 LINE L1 -4382 2158 1344 879 218 26 0 chr1 19129423 19129652 -263064012 - L1MA7 LINE L1 0 6291 6057 1880 158 3 20 chr1 19129662 19129965 -263063699 - AluJb SINE Alu -14 298 1 263 194 122 109 chr1 19130216 19130545 -263063119 - L1ME1 LINE L1 -5681 849 517 266 271 157 7 chr1 19130664 19130804 -263062860 - L1MC4 LINE L1 -364 7678 7518 1911 296 161 13 chr1 19130804 19131152 -263062512 + L2 LINE L2 1822 2117 -1196 2402 106 0 3 chr1 19131152 19131463 -263062201 - AluSx SINE Alu -2 310 1 1911 296 161 13 chr1 19131463 19132333 -263061331 + L2 LINE L2 2117 3219 -94 1564 148 93 4 chr1 19133210 19133480 -263060184 + AluJb SINE Alu 1 294 -18 3146 209 54 51 chr1 19133528 19134030 -263059634 - L1ME1 LINE L1 -68 6098 5599 2003 99 0 33 chr1 19134030 19134303 -263059361 - AluSp SINE Alu -14 299 36 3146 209 54 51 chr1 19134303 19135094 -263058570 - L1ME1 LINE L1 -567 5599 4797 2229 106 10 0 chr1 19135094 19135387 -263058277 - AluSx SINE Alu -16 296 1 3146 209 54 51 chr1 19135387 19135465 -263058199 - L1ME1 LINE L1 -1369 4797 4721 212 194 0 0 chr1 19135492 19135528 -263058136 - MIR SINE MIR -107 155 120 553 336 65 14 chr1 19135631 19135797 -263057867 + MIR SINE MIR 21 202 -60 318 253 13 0 chr1 19135797 19135876 -263057788 + MER116 DNA Mariner 1 80 0 553 336 65 14 chr1 19135876 19135926 -263057738 + MIR SINE MIR 202 248 -14 182 280 140 0 chr1 19136228 19136335 -263057329 - L2 LINE L2 -229 3043 2922 1822 149 56 3 chr1 19136924 19137212 -263056452 + AluJb SINE Alu 3 305 -7 306 292 200 15 chr1 19137402 19137597 -263056067 - L2 LINE L2 -84 3229 2999 522 188 69 0 chr1 19137674 19137775 -263055889 + MER58A DNA MER1_type 1 108 0 23 0 0 0 chr1 19137835 19137858 -263055806 + AT_rich Low_complexity Low_complexity 1 23 0 340 185 0 170 chr1 19137913 19138006 -263055658 + MER58A DNA MER1_type 113 178 -2242 890 201 11 11 chr1 19138006 19138195 -263055469 - MER53 DNA DNA 0 189 1 340 185 0 170 chr1 19138195 19138236 -263055428 + MER58A DNA MER1_type 178 224 0 288 248 8 96 chr1 19138236 19138361 -263055303 - L2 LINE L2 -545 2769 2656 253 107 89 0 chr1 19138701 19138757 -263054907 + T-rich Low_complexity Low_complexity 2 62 0 227 357 125 13 chr1 19140790 19141014 -263052650 - L2 LINE L2 -17 3296 3048 262 308 29 0 chr1 19141021 19141125 -263052539 + MLT1J2 LTR MaLR 15 121 -329 513 198 135 42 chr1 19141184 19141376 -263052288 + MLT1J2 LTR MaLR 241 450 0 196 204 315 0 chr1 19141425 19141479 -263052185 - MIR SINE MIR -186 76 6 350 274 124 20 chr1 19141761 19141914 -263051750 + MIR SINE MIR 27 195 -67 411 324 28 0 chr1 19142041 19142183 -263051481 - MIR SINE MIR -34 228 83 322 250 242 18 chr1 19142212 19142449 -263051215 - MLT1L LTR MaLR -6 581 239 611 249 104 59 chr1 19143642 19143863 -263049801 + MIR SINE MIR 1 231 -31 1329 190 44 96 chr1 19144052 19144437 -263049227 + MLT1A1 LTR MaLR 1 365 0 250 269 0 65 chr1 19144559 19144652 -263049012 + L2 LINE L2 2919 3005 -308 551 272 42 47 chr1 19145337 19145528 -263048136 + MIR SINE MIR 15 204 -58 222 261 15 31 chr1 19145515 19145580 -263048084 - L2 LINE L2 0 3272 3209 * 279 120 40 20 chr1 19145597 19145647 -263048017 + MIR SINE MIR 201 251 -11 431 215 0 0 chr1 19146884 19146963 -263046701 + MIR SINE MIR 65 143 -119 724 288 43 9 chr1 19147460 19147704 -263045960 + MIR SINE MIR 6 256 -6 1162 242 163 38 chr1 19148128 19148826 -263044838 + L2 LINE L2 2512 3309 -4 299 313 109 15 chr1 19148867 19149068 -263044596 + L3b LINE CR1 1272 1491 -92 193 305 281 0 chr1 19149233 19149315 -263044349 - L2 LINE L2 -18 3254 3150 228 143 0 0 chr1 19149539 19149574 -263044090 - MIR SINE MIR -111 151 117 325 331 46 15 chr1 19150023 19150153 -263043511 + MIR SINE MIR 110 243 -19 195 282 39 0 chr1 19150172 19150250 -263043414 + MIR SINE MIR 14 94 -168 280 240 62 42 chr1 19150382 19150478 -263043186 - MIR3 SINE MIR -7 201 104 368 279 55 61 chr1 19151027 19151192 -263042472 + MIR3 SINE MIR 24 187 -21 608 291 140 51 chr1 19151287 19151658 -263042006 - L2 LINE L2 -39 3233 2830 1808 165 73 30 chr1 19151843 19152213 -263041451 - MLT1B LTR MaLR -4 386 1 288 281 60 60 chr1 19152285 19152452 -263041212 - MIR3 SINE MIR -7 201 35 319 319 0 30 chr1 19152526 19152661 -263041003 + MIR SINE MIR 56 186 -76 1839 191 30 19 chr1 19152746 19153107 -263040557 + MLT1A1 LTR MaLR 1 365 0 2193 64 0 36 chr1 19153662 19153942 -263039722 - AluY SINE Alu -1 310 41 208 333 56 40 chr1 19153943 19154069 -263039595 + MIR SINE MIR 58 185 -77 2325 104 0 0 chr1 19155088 19155387 -263038277 - AluSx SINE Alu -15 297 1 335 264 129 103 chr1 19155564 19155943 -263037721 + L2 LINE L2 2900 3288 -25 208 292 0 0 chr1 19156769 19156817 -263036847 - L2 LINE L2 -14 3258 3211 466 238 119 0 chr1 19157081 19157232 -263036432 + LTR16C LTR ERVL 321 489 -2 263 296 20 10 chr1 19157266 19157364 -263036300 - MIR SINE MIR -130 132 34 252 306 20 10 chr1 19158624 19158722 -263034942 + MIR SINE MIR 34 132 -130 384 123 0 0 chr1 19159190 19159263 -263034401 + (TG)n Simple_repeat Simple_repeat 2 74 0 192 77 0 0 chr1 19159375 19159401 -263034263 + (TG)n Simple_repeat Simple_repeat 1 26 0 625 110 0 0 chr1 19159602 19159684 -263033980 - AluS SINE Alu -230 83 2 239 320 105 76 chr1 19159703 19160084 -263033580 + L2 LINE L2 2881 3272 0 825 310 71 10 chr1 19160457 19160674 -263032990 + L2 LINE L2 2545 2747 -566 1286 216 5 0 chr1 19160674 19160896 -263032768 - MER58A DNA MER1_type 0 224 2 825 310 71 10 chr1 19160896 19161265 -263032399 + L2 LINE L2 2747 3175 -138 758 188 0 17 chr1 19161275 19161456 -263032208 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 2389 148 6 6 chr1 19161464 19161829 -263031835 - MLT1A1 LTR MaLR 0 365 1 276 100 0 0 chr1 19161829 19161869 -263031795 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 259 341 14 43 chr1 19161870 19162008 -263031656 + L2 LINE L2 3136 3269 -3 2367 87 0 0 chr1 19162210 19162520 -263031144 + AluY SINE Alu 1 310 -1 21 0 0 0 chr1 19162685 19162706 -263030958 + AT_rich Low_complexity Low_complexity 1 21 0 244 233 27 14 chr1 19163019 19163092 -263030572 + CT-rich Low_complexity Low_complexity 2 75 0 217 345 58 0 chr1 19163099 19163186 -263030478 - L2 LINE L2 -41 3231 3140 714 250 62 54 chr1 19163208 19163362 -263030302 + MIR SINE MIR 36 194 -68 2313 108 42 33 chr1 19163362 19163723 -263029941 + THE1B LTR MaLR 1 364 0 714 250 62 54 chr1 19163723 19163792 -263029872 + MIR SINE MIR 194 261 -1 573 281 12 12 chr1 19163838 19163998 -263029666 - L2 LINE L2 -189 3083 2924 1658 234 47 30 chr1 19164098 19164617 -263029047 + MLT1F1 LTR MaLR 25 567 0 703 286 37 14 chr1 19164740 19164957 -263028707 - MIR SINE MIR 0 262 41 266 190 63 13 chr1 19165167 19165246 -263028418 - L2 LINE L2 -905 2409 2327 962 160 75 21 chr1 19166201 19166345 -263027319 + MER20 DNA MER1_type 22 180 -39 1756 145 9 35 chr1 19166345 19166662 -263027002 - AluJb SINE Alu 0 312 4 962 160 75 21 chr1 19166662 19166704 -263026960 + MER20 DNA MER1_type 180 218 -1 22 0 0 0 chr1 19167041 19167063 -263026601 + AT_rich Low_complexity Low_complexity 1 22 0 330 205 0 27 chr1 19167502 19167614 -263026050 + CT-rich Low_complexity Low_complexity 1 109 0 182 291 51 38 chr1 19167944 19168023 -263025641 - MIR SINE MIR -67 141 62 381 277 84 0 chr1 19168205 19168324 -263025340 - MIR SINE MIR -75 187 59 2208 104 3 0 chr1 19168340 19168638 -263025026 - AluSq SINE Alu -10 303 5 315 303 106 29 chr1 19168910 19169184 -263024480 - L1MC4a LINE L1 -1929 5879 5585 2130 126 0 13 chr1 19169245 19169562 -263024102 + AluSq SINE Alu 1 313 0 212 320 29 3 chr1 19169877 19169982 -263023682 - MIR SINE MIR -77 131 23 191 305 34 0 chr1 19170451 19170510 -263023154 - L2 LINE L2 -79 3193 3133 378 313 189 5 chr1 19170648 19170865 -263022799 + MIR SINE MIR 3 259 -3 2411 69 0 0 chr1 19170943 19171246 -263022418 - AluY SINE Alu -8 303 1 786 290 32 0 chr1 19172072 19172293 -263021371 - MIR SINE MIR -13 249 22 721 137 16 33 chr1 19172977 19173160 -263020504 + GA-rich Low_complexity Low_complexity 1 180 0 227 245 0 0 chr1 19173389 19173442 -263020222 + G-rich Low_complexity Low_complexity 5 57 0 270 116 0 0 chr1 19173761 19173804 -263019860 + (CCCA)n Simple_repeat Simple_repeat 4 46 0 307 341 35 0 chr1 19173985 19174158 -263019506 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 693 249 0 0 chr1 19174173 19174571 -263019093 + (TCCA)n Simple_repeat Simple_repeat 1 398 0 605 310 51 14 chr1 19174836 19175052 -263018612 + MIR SINE MIR 29 252 -10 1497 194 15 15 chr1 19175676 19176001 -263017663 + MER63B DNA MER1_type 9 333 -103 23 0 0 0 chr1 19176222 19176245 -263017419 + AT_rich Low_complexity Low_complexity 1 23 0 2187 116 0 0 chr1 19176492 19176793 -263016871 + AluSx SINE Alu 1 301 -11 633 188 0 8 chr1 19176886 19177003 -263016661 + MER63B DNA MER1_type 320 435 -1 374 55 14 41 chr1 19177713 19177786 -263015878 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 475 172 13 10 chr1 19177985 19178081 -263015583 + MER33 DNA MER1_type 1 88 -93 794 144 0 0 chr1 19178082 19178200 -263015464 + AluJb SINE Alu 174 291 -21 1077 138 42 8 chr1 19178200 19178439 -263015225 + MER33 DNA MER1_type 78 324 0 2003 113 16 29 chr1 19178945 19179255 -263014409 + AluJb SINE Alu 1 306 -6 942 215 27 27 chr1 19179269 19179488 -263014176 - MER20 DNA MER1_type 0 219 1 219 292 97 0 chr1 19179552 19179624 -263014040 + L2 LINE L2 3153 3231 -41 386 309 39 28 chr1 19180191 19180372 -263013292 + MIR3 SINE MIR 16 198 -10 335 244 0 12 chr1 19180595 19180677 -263012987 + MIR SINE MIR 100 180 -82 * 399 259 30 46 chr1 19180657 19180788 -263012876 - MIR SINE MIR -90 172 44 205 280 0 0 chr1 19180923 19180973 -263012691 - L2 LINE L2 -3 3310 3261 830 184 0 47 chr1 19181062 19181176 -263012488 + L1ME2 LINE L1 5714 5817 -347 1683 98 0 0 chr1 19181176 19181401 -263012263 - AluSq SINE Alu -16 297 73 830 184 0 47 chr1 19181401 19181476 -263012188 + L1ME2 LINE L1 5817 5894 -270 766 262 29 81 chr1 19181482 19181636 -263012028 - L2 LINE L2 -124 3189 3029 2542 174 12 21 chr1 19181636 19182066 -263011598 + MSTB LTR MaLR 1 426 0 766 262 29 81 chr1 19182066 19182373 -263011291 - L2 LINE L2 -284 3029 2768 356 291 131 29 chr1 19183106 19183281 -263010383 + MIR SINE MIR 8 200 -62 1415 194 39 22 chr1 19183281 19183664 -263010000 - MLT1F1 LTR MaLR -2 565 155 3288 216 31 27 chr1 19183677 19183822 -263009842 - L1ME1 LINE L1 -66 6100 5957 1835 152 3 16 chr1 19183822 19184137 -263009527 - AluJb SINE Alu -1 311 1 3288 216 31 27 chr1 19184137 19184805 -263008859 - L1ME1 LINE L1 -209 5957 5293 2228 109 0 0 chr1 19184805 19185118 -263008546 - AluSq SINE Alu 0 313 1 3288 216 31 27 chr1 19185118 19185814 -263007850 - L1ME1 LINE L1 -873 5293 4584 419 202 29 19 chr1 19185922 19186026 -263007638 - MLT1F1 LTR MaLR -436 106 2 369 286 37 65 chr1 19186600 19186890 -263006774 - MLT1H LTR MaLR -109 300 51 463 277 108 12 chr1 19187455 19187621 -263006043 - MIR SINE MIR -4 258 77 507 355 12 36 chr1 19187680 19187931 -263005733 + L3 LINE CR1 1331 1575 -2 360 262 116 29 chr1 19188008 19188180 -263005484 - MIR3 SINE MIR -6 202 16 488 136 0 12 chr1 19188905 19188986 -263004678 - MER116 DNA Mariner 0 80 1 350 262 8 49 chr1 19189289 19189411 -263004253 - MLT1K LTR MaLR -2 586 470 682 273 136 23 chr1 19189519 19189790 -263003874 + MLT1J2 LTR MaLR 59 380 -70 1665 155 0 54 chr1 19189790 19190086 -263003578 - AluJb SINE Alu -22 290 11 682 273 136 23 chr1 19190086 19190166 -263003498 + MLT1J2 LTR MaLR 380 450 0 593 330 65 40 chr1 19190166 19190487 -263003177 - MLT1K LTR MaLR -144 444 116 292 323 50 34 chr1 19191336 19191520 -263002144 - MIR SINE MIR -13 249 63 216 406 0 0 chr1 19191539 19191635 -263002029 - L2 LINE L2 -5 3308 3213 847 226 73 57 chr1 19191849 19191902 -263001762 - MIR SINE MIR -10 252 201 2055 116 7 3 chr1 19191902 19192196 -263001468 - AluSx SINE Alu -17 295 1 847 226 73 57 chr1 19192196 19192390 -263001274 - MIR SINE MIR -61 201 1 372 226 0 24 chr1 19193471 19193555 -263000109 - MIR SINE MIR -61 147 66 1751 213 71 42 chr1 19193830 19194132 -262999532 - MLT1C LTR MaLR 0 467 175 2184 112 3 0 chr1 19194132 19194435 -262999229 + AluSg SINE Alu 1 304 -6 2089 138 3 0 chr1 19194439 19194744 -262998920 + AluSx SINE Alu 1 306 -6 1751 213 71 42 chr1 19194744 19194887 -262998777 - MLT1C LTR MaLR -294 173 4 208 319 96 30 chr1 19194887 19195012 -262998652 + MIR SINE MIR 54 190 -72 811 258 10 0 chr1 19195633 19195831 -262997833 + MIR SINE MIR 57 256 -6 2350 57 9 31 chr1 19195834 19196152 -262997512 - AluY SINE Alu 0 311 1 379 245 152 40 chr1 19197087 19197238 -262996426 + MIR SINE MIR 91 258 -4 439 208 17 0 chr1 19197249 19197369 -262996295 + (TGG)n Simple_repeat Simple_repeat 1 122 0 198 276 83 50 chr1 19197559 19197740 -262995924 - L2 LINE L2 -383 2931 2745 213 39 0 0 chr1 19198114 19198140 -262995524 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 279 283 111 10 chr1 19198145 19198244 -262995420 - L2 LINE L2 -18 3295 3187 647 340 80 28 chr1 19198833 19199318 -262994346 + L2 LINE L2 2764 3272 0 315 203 0 0 chr1 19199318 19199392 -262994272 + (TGGA)n Simple_repeat Simple_repeat 2 75 0 214 293 162 0 chr1 19199967 19200066 -262993598 - MIR SINE MIR -116 146 32 239 280 217 7 chr1 19201200 19201343 -262992321 + MIR3 SINE MIR 27 199 -9 190 235 42 109 chr1 19201833 19201952 -262991712 + MIR SINE MIR 37 147 -115 423 231 109 34 chr1 19202056 19202107 -262991557 - MIR SINE MIR 0 262 216 2552 81 5 51 chr1 19202107 19202149 -262991515 - THE1A LTR MaLR 0 355 313 2221 112 0 0 chr1 19202149 19202452 -262991212 + AluSx SINE Alu 1 303 -9 2552 81 5 51 chr1 19202452 19202781 -262990883 - THE1A LTR MaLR -42 313 1 423 231 109 34 chr1 19202781 19202876 -262990788 - MIR SINE MIR -46 216 105 300 237 145 40 chr1 19202995 19203147 -262990517 - L2 LINE L2 -215 3057 2890 323 254 40 92 chr1 19203690 19203863 -262989801 - MIR3 SINE MIR -35 173 10 225 339 0 0 chr1 19203902 19203967 -262989697 + CT-rich Low_complexity Low_complexity 3 67 0 427 255 99 14 chr1 19204613 19204754 -262988910 + MIR SINE MIR 31 183 -79 180 200 0 0 chr1 19204808 19204848 -262988816 + (CTG)n Simple_repeat Simple_repeat 2 41 0 258 356 48 0 chr1 19204880 19204984 -262988680 + L2 LINE L2 3205 3313 0 416 223 58 0 chr1 19205568 19205695 -262987969 - MIR SINE MIR -62 146 48 204 210 32 32 chr1 19206132 19206194 -262987470 + MIR SINE MIR 85 146 -62 1398 256 85 24 chr1 19206206 19206667 -262986997 + MLT1D LTR MaLR 16 504 -1 275 200 0 12 chr1 19206872 19206952 -262986712 + C-rich Low_complexity Low_complexity 4 82 0 461 273 25 0 chr1 19206978 19207099 -262986565 + MER5B DNA MER1_type 1 124 -54 908 232 189 12 chr1 19207100 19207359 -262986305 - AluSp SINE Alu -8 305 1 244 255 0 0 chr1 19207368 19207419 -262986245 + MER5B DNA MER1_type 124 174 -4 1717 266 37 19 chr1 19207496 19208063 -262985601 + MLT1K LTR MaLR 12 588 0 196 256 68 86 chr1 19208063 19208125 -262985539 + MIR3 SINE MIR 82 143 -65 2283 89 0 17 chr1 19208125 19208453 -262985211 + AluSc SINE Alu 1 309 0 196 256 68 86 chr1 19208453 19208507 -262985157 + MIR3 SINE MIR 143 196 -12 278 211 144 58 chr1 19208916 19209020 -262984644 + MIR SINE MIR 13 125 -137 436 254 175 17 chr1 19209039 19209216 -262984448 - MLT1K LTR MaLR -371 217 13 318 50 0 0 chr1 19209308 19209348 -262984316 + (TG)n Simple_repeat Simple_repeat 1 40 0 473 310 28 42 chr1 19209852 19210068 -262983596 + MIR SINE MIR 2 214 -48 499 283 26 46 chr1 19210732 19210884 -262982780 - MIR3 SINE MIR -59 149 1 1377 52 0 0 chr1 19210923 19211097 -262982567 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 12487 194 24 13 chr1 19211137 19214964 -262978700 + L1PA16 LINE L1 2300 6161 -5 2566 125 14 16 chr1 19214972 19215404 -262978260 - L1MB2 LINE L1 -7 6164 5734 557 234 39 0 chr1 19215414 19215542 -262978122 + MIR SINE MIR 53 185 -77 1054 242 33 102 chr1 19215547 19216027 -262977637 + LTR16A1 LTR ERVL 7 453 -4 291 204 31 71 chr1 19216027 19216125 -262977539 - MIR SINE MIR -5 257 164 662 204 84 7 chr1 19216205 19216347 -262977317 + MLT1A2 LTR MaLR 180 332 -42 237 257 162 0 chr1 19216555 19216629 -262977035 + MIR3 SINE MIR 77 162 -46 655 295 5 0 chr1 19216629 19216819 -262976845 + MER117 DNA MER1_type 2 192 -5 892 283 135 21 chr1 19217042 19217463 -262976201 + MLT1K LTR MaLR 76 544 -44 213 303 151 8 chr1 19217830 19217949 -262975715 - MIR3 SINE MIR -69 139 4 196 240 60 0 chr1 19218032 19218082 -262975582 + MIR SINE MIR 201 253 -9 235 330 59 17 chr1 19218105 19218223 -262975441 - LTR16C LTR ERVL 0 491 369 2289 205 14 27 chr1 19218243 19218755 -262974909 + MLT1F LTR MaLR 9 513 -29 228 313 20 0 chr1 19219179 19219278 -262974386 + (TGAG)n Simple_repeat Simple_repeat 1 101 0 756 142 0 8 chr1 19219387 19219514 -262974150 + MLT1F1 LTR MaLR 334 459 -108 281 308 9 28 chr1 19220059 19220166 -262973498 - MIR SINE MIR -105 157 53 249 309 73 9 chr1 19220298 19220408 -262973256 + MIR3 SINE MIR 45 161 -47 312 281 52 30 chr1 19220522 19220657 -262973007 - MIR SINE MIR -87 175 38 723 303 107 29 chr1 19220803 19221216 -262972448 - MLT1K LTR MaLR -3 585 141 443 211 41 32 chr1 19221300 19221423 -262972241 - MIR SINE MIR -70 192 69 183 320 40 32 chr1 19221702 19221827 -262971837 - L2 LINE L2 -182 3090 2965 715 215 5 70 chr1 19221933 19222133 -262971531 + MIR SINE MIR 52 238 -24 217 268 70 14 chr1 19222250 19222321 -262971343 + MIR SINE MIR 3 77 -185 230 270 16 0 chr1 19222358 19222421 -262971243 + MIR SINE MIR 176 239 -23 306 256 17 34 chr1 19222495 19222612 -262971052 - MLT1K LTR MaLR -392 196 82 807 210 87 10 chr1 19222635 19222830 -262970834 + MER58C DNA MER1_type 6 215 0 817 206 178 52 chr1 19222955 19223343 -262970321 - LTR33A LTR ERVL 0 523 87 857 236 139 27 chr1 19223826 19224199 -262969465 + MER113 DNA MER1_type? 38 452 -69 451 122 100 11 chr1 19224228 19224318 -262969346 + MER4A LTR ERV1 1 98 -566 2236 110 10 3 chr1 19224413 19224714 -262968950 + AluSq SINE Alu 7 309 -4 1201 134 10 29 chr1 19224716 19224971 -262968693 + MER4B LTR ERV1 381 620 -44 1373 95 0 0 chr1 19224971 19225140 -262968524 - AluSc SINE Alu -17 292 124 354 127 0 0 chr1 19225140 19225195 -262968469 + MER4A LTR ERV1 610 664 0 733 292 55 8 chr1 19225797 19226033 -262967631 - MIR SINE MIR -14 248 2 233 250 21 0 chr1 19226645 19226741 -262966923 + CT-rich Low_complexity Low_complexity 4 101 0 975 95 34 14 chr1 19226806 19226953 -262966711 + THE1B LTR MaLR 1 150 -214 753 233 27 0 chr1 19227568 19227718 -262965946 + MIR SINE MIR 88 241 -21 570 305 17 11 chr1 19227950 19228124 -262965540 + MIR SINE MIR 79 253 -9 372 219 146 41 chr1 19228492 19228615 -262965049 - MIR SINE MIR -118 144 9 518 113 31 21 chr1 19228819 19228916 -262964748 + MER4A LTR ERV1 1 98 -566 1747 153 6 10 chr1 19228916 19229263 -262964401 + MER4A LTR ERV1 261 664 0 194 298 0 0 chr1 19229525 19229572 -262964092 - L2 LINE L2 -2885 429 383 495 288 124 26 chr1 19229903 19230136 -262963528 + MIR SINE MIR 7 262 0 1056 277 93 27 chr1 19231512 19231920 -262961744 - LTR16A LTR ERVL 0 450 16 1013 243 33 16 chr1 19232332 19232575 -262961089 + MIR SINE MIR 6 252 -10 1829 155 3 44 chr1 19232616 19232932 -262960732 - AluJo SINE Alu -9 303 1 181 282 118 24 chr1 19233387 19233472 -262960192 + MIR3 SINE MIR 112 204 -4 317 272 22 11 chr1 19234148 19234240 -262959424 - MIR SINE MIR -139 123 31 513 256 105 23 chr1 19234259 19234431 -262959233 + MIR3 SINE MIR 12 197 -11 189 162 81 0 chr1 19235598 19235635 -262958029 + L2 LINE L2 3220 3259 -13 * 1164 254 151 40 chr1 19235622 19236027 -262957637 + L2 LINE L2 2742 3216 -97 2440 64 0 3 chr1 19236027 19236323 -262957341 - AluY SINE Alu -16 295 1 1164 254 151 40 chr1 19236323 19236434 -262957230 + L2 LINE L2 3216 3313 0 450 339 8 0 chr1 19236613 19236740 -262956924 - L2 LINE L2 -3 3269 3142 188 337 65 11 chr1 19236866 19236958 -262956706 + MIR3 SINE MIR 104 200 -8 187 354 110 0 chr1 19237622 19237704 -262955960 + L3b LINE CR1 1345 1435 -148 444 118 0 0 chr1 19237757 19237825 -262955839 + (TCCA)n Simple_repeat Simple_repeat 2 69 0 413 285 103 89 chr1 19237825 19238194 -262955470 - L2 LINE L2 0 3272 2899 597 228 13 7 chr1 19238225 19238374 -262955290 + MLT1K LTR MaLR 122 271 -317 379 417 25 0 chr1 19238436 19238599 -262955065 + MIR3 SINE MIR 19 185 -23 340 270 90 0 chr1 19239462 19239551 -262954113 - MIR SINE MIR -83 125 29 188 298 107 24 chr1 19240030 19240114 -262953550 + MIR SINE MIR 122 212 -50 195 100 0 33 chr1 19240185 19240215 -262953449 + L2 LINE L2 3224 3252 -20 824 235 3 21 chr1 19240430 19240651 -262953013 - MIR SINE MIR 0 262 49 1040 178 0 0 chr1 19241899 19242062 -262951602 - AluJb SINE Alu -1 311 149 295 250 15 0 chr1 19242062 19242130 -262951534 + MIR SINE MIR 160 228 -34 184 354 24 0 chr1 19242174 19242256 -262951408 + MIR SINE MIR 38 121 -87 393 326 124 23 chr1 19242299 19242517 -262951147 + MIR SINE MIR 20 259 -3 241 298 43 11 chr1 19242694 19242788 -262950876 + MIR SINE MIR 110 206 -56 221 322 44 11 chr1 19242879 19242969 -262950695 - L2 LINE L2 -19 3294 3202 327 277 27 0 chr1 19243288 19243400 -262950264 - MARNA DNA Mariner -337 249 135 491 255 143 25 chr1 19244052 19244213 -262949451 + MIR SINE MIR 83 262 0 273 309 10 10 chr1 19244368 19244465 -262949199 - L2 LINE L2 -57 3256 3160 613 268 45 17 chr1 19244494 19244673 -262948991 + L2 LINE L2 3130 3313 0 453 273 83 0 chr1 19245066 19245198 -262948466 + MIR SINE MIR 47 189 -73 413 297 52 78 chr1 19245204 19245415 -262948249 + MIR SINE MIR 1 205 -57 2786 89 6 3 chr1 19245415 19245776 -262947888 - THE1B LTR MaLR -2 362 1 413 297 52 78 chr1 19245776 19245833 -262947831 + MIR SINE MIR 205 262 0 180 0 0 0 chr1 19245912 19245932 -262947732 + (TTG)n Simple_repeat Simple_repeat 2 21 0 314 301 0 0 chr1 19246120 19246193 -262947471 - MIR SINE MIR -110 152 80 258 218 45 113 chr1 19246332 19246465 -262947199 - MIR SINE MIR -70 192 69 325 232 30 61 chr1 19247084 19247183 -262946481 + MIR SINE MIR 167 262 0 211 93 0 56 chr1 19247340 19247394 -262946270 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 681 275 135 5 chr1 19248058 19248265 -262945399 - MIR SINE MIR -21 241 8 977 182 0 0 chr1 19248293 19248447 -262945217 + FRAM SINE Alu 5 158 -18 266 232 51 0 chr1 19248562 19248650 -262945014 - MIR SINE MIR -59 149 100 380 219 8 0 chr1 19249157 19249280 -262944384 + CT-rich Low_complexity Low_complexity 3 126 0 618 89 0 0 chr1 19249285 19249375 -262944289 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 319 240 93 156 chr1 19249415 19249488 -262944176 + L2 LINE L2 3103 3179 -134 2202 100 53 47 chr1 19249488 19249672 -262943992 + THE1B LTR MaLR 1 192 -172 2245 108 7 3 chr1 19249672 19250030 -262943634 + AluSp SINE Alu 1 359 0 2202 100 53 47 chr1 19250030 19250201 -262943463 + THE1B LTR MaLR 192 361 -3 455 0 18 0 chr1 19250201 19250256 -262943408 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 319 240 93 156 chr1 19250256 19250406 -262943258 + L2 LINE L2 3177 3313 0 264 300 78 88 chr1 19250690 19250997 -262942667 + L2 LINE L2 2895 3198 -74 2359 110 0 0 chr1 19251041 19251350 -262942314 - AluY SINE Alu -2 309 1 745 276 77 10 chr1 19251402 19251598 -262942066 - MIR SINE MIR -25 237 29 294 355 0 8 chr1 19251612 19251733 -262941931 + MIR3 SINE MIR 82 201 -7 389 241 37 19 chr1 19251993 19252101 -262941563 + MLT1H LTR MaLR 97 206 -343 2282 111 10 0 chr1 19252556 19252853 -262940811 - AluSx SINE Alu -12 300 1 1884 205 101 5 chr1 19253487 19253902 -262939762 - MLT1D LTR MaLR -48 457 3 207 233 17 55 chr1 19253936 19254033 -262939631 - MIR SINE MIR -102 160 32 316 308 99 9 chr1 19254169 19254283 -262939381 - MIR SINE MIR -61 147 40 1767 204 44 42 chr1 19254291 19254747 -262938917 + LTR16A1 LTR ERVL 1 457 0 1883 272 54 33 chr1 19254750 19255394 -262938270 - MLT2F LTR ERVL -2 661 4 6399 270 56 48 chr1 19255396 19258003 -262935661 - ERVL-F LTR ERVL -7 5757 3132 718 337 4 4 chr1 19258008 19258257 -262935407 - ERVL LTR ERVL -4430 1334 1086 281 200 14 0 chr1 19258277 19258348 -262935316 - MLT2E LTR ERVL -548 80 8 588 148 0 0 chr1 19258564 19258652 -262935012 + AluJ/FLAM SINE Alu 6 93 -219 185 0 40 0 chr1 19258655 19258680 -262934984 + (TAA)n Simple_repeat Simple_repeat 2 27 0 377 271 158 0 chr1 19258727 19258888 -262934776 - MIR SINE MIR -44 218 37 1478 223 82 75 chr1 19259750 19260287 -262933377 - L2 LINE L2 0 3313 2781 1853 176 40 0 chr1 19260287 19260583 -262933081 - AluJb SINE Alu -2 310 3 1523 135 0 5 chr1 19260585 19260807 -262932857 - AluJb SINE Alu -11 301 81 1478 223 82 75 chr1 19260807 19261142 -262932522 - L2 LINE L2 -532 2781 2421 462 234 23 99 chr1 19261162 19261333 -262932331 + MIR SINE MIR 61 218 -44 209 32 0 32 chr1 19261342 19261373 -262932291 + (TTA)n Simple_repeat Simple_repeat 2 31 0 306 250 284 23 chr1 19261400 19261451 -262932213 + MER58A DNA MER1_type 3 39 -2381 2624 71 0 0 chr1 19261451 19261759 -262931905 + AluY SINE Alu 1 308 -3 306 250 284 23 chr1 19261759 19261883 -262931781 + MER58A DNA MER1_type 39 224 0 202 323 0 0 chr1 19262563 19262625 -262931039 + L2 LINE L2 3210 3271 -1 296 303 10 0 chr1 19262958 19263057 -262930607 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1301 115 0 0 chr1 19263362 19263527 -262930137 - AluSc SINE Alu -21 288 124 2266 85 7 3 chr1 19263527 19263820 -262929844 - AluY SINE Alu -17 294 1 244 183 0 28 chr1 19263837 19263908 -262929756 + CT-rich Low_complexity Low_complexity 5 73 0 697 156 0 64 chr1 19263915 19264056 -262929608 - FLAM_C SINE Alu -1 132 1 221 218 41 3 chr1 19264073 19264134 -262929530 + MIR SINE MIR 74 137 -71 600 214 162 7 chr1 19264514 19264668 -262928996 - MER45A DNA AcHobo 0 178 1 694 239 58 5 chr1 19264688 19264925 -262928739 + MIR SINE MIR 14 261 -1 469 337 146 5 chr1 19265866 19266276 -262927388 - L2 LINE L2 -531 2783 2316 839 281 126 17 chr1 19266729 19267198 -262926466 - LTR33 LTR ERVL -1 520 1 2168 108 10 0 chr1 19267245 19267578 -262926086 + AluSx SINE Alu 1 336 0 2343 119 0 0 chr1 19268401 19268711 -262924953 - AluSg SINE Alu 0 310 1 406 273 26 12 chr1 19268923 19269111 -262924553 + MIR SINE MIR 29 259 -3 384 227 62 32 chr1 19269140 19269295 -262924369 - MIR SINE MIR -62 146 16 2152 65 0 129 chr1 19269924 19270264 -262923400 - AluY SINE Alu -15 296 1 473 302 0 44 chr1 19270277 19270459 -262923205 - MIR3 SINE MIR -17 191 18 951 219 68 0 chr1 19270534 19270753 -262922911 - MIR SINE MIR 0 262 29 263 280 83 51 chr1 19271050 19271207 -262922457 + MIR3 SINE MIR 30 191 -17 245 376 30 8 chr1 19271962 19272095 -262921569 + MIR SINE MIR 47 182 -80 1860 148 133 21 chr1 19272283 19272668 -262920996 + MSTA LTR MaLR 1 428 0 302 95 111 32 chr1 19273256 19273319 -262920345 + MADE1 DNA Mariner 9 76 -4 369 344 6 12 chr1 19273348 19273511 -262920153 - MIR3 SINE MIR -7 201 40 198 286 0 0 chr1 19273563 19273612 -262920052 + L2 LINE L2 3186 3234 -38 265 223 32 21 chr1 19274072 19274166 -262919498 + L2 LINE L2 2965 3059 -213 229 315 0 0 chr1 19274751 19274816 -262918848 + MIR SINE MIR 85 143 -65 347 318 68 26 chr1 19274914 19275178 -262918486 + L2 LINE L2 2630 2904 -410 833 284 61 37 chr1 19275339 19275667 -262917997 + MLT1H1 LTR MaLR 37 375 -215 663 230 153 89 chr1 19275858 19276275 -262917389 + MLT1J1 LTR MaLR 3 446 0 410 304 24 8 chr1 19276536 19276661 -262917003 + L2 LINE L2 3143 3269 -3 306 240 53 13 chr1 19277495 19277570 -262916094 - MIR SINE MIR -72 190 113 227 293 146 0 chr1 19277935 19278017 -262915647 + MLT1H1 LTR MaLR 454 547 -2 2323 102 0 3 chr1 19278307 19278602 -262915062 + AluSg1 SINE Alu 1 294 -15 419 216 18 13 chr1 19278617 19278726 -262914938 - MIR3 SINE MIR -48 160 57 1778 141 92 0 chr1 19278764 19279048 -262914616 + AluSg SINE Alu 1 310 0 424 285 20 40 chr1 19279236 19279436 -262914228 + MLT1K LTR MaLR 359 554 -34 268 264 118 27 chr1 19279718 19279828 -262913836 + MIR3 SINE MIR 65 184 -24 296 262 83 60 chr1 19279862 19280030 -262913634 + L2 LINE L2 2920 3091 -181 216 67 0 0 chr1 19280687 19280717 -262912947 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 296 234 31 0 chr1 19280717 19280781 -262912883 - L2 LINE L2 0 3313 3248 329 298 32 16 chr1 19280809 19280933 -262912731 - MIR SINE MIR -135 127 2 189 232 0 0 chr1 19281038 19281107 -262912557 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 660 283 95 68 chr1 19281945 19282280 -262911384 - Charlie8 DNA MER1_type -1925 492 141 2006 156 0 0 chr1 19282280 19282300 -262911364 - AluJb SINE Alu -5 307 288 665 24 12 0 chr1 19282300 19282383 -262911281 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 2006 156 0 0 chr1 19282383 19282669 -262910995 - AluJb SINE Alu -23 289 1 660 283 95 68 chr1 19282669 19282774 -262910890 - Charlie8 DNA MER1_type -2276 141 40 841 283 74 14 chr1 19282935 19283285 -262910379 - MLT1H LTR MaLR -178 371 1 239 291 25 25 chr1 19283291 19283370 -262910294 + MIR3 SINE MIR 90 168 -40 698 103 16 0 chr1 19283816 19283942 -262909722 + (TCCA)n Simple_repeat Simple_repeat 3 130 0 2509 80 0 0 chr1 19283946 19284247 -262909417 - AluY SINE Alu -10 301 1 181 301 72 78 chr1 19286079 19286169 -262907495 + MIR SINE MIR 27 117 -145 1634 161 45 0 chr1 19286169 19286336 -262907328 - AluJo SINE Alu -13 299 112 288 0 0 0 chr1 19286336 19286368 -262907296 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1634 161 45 0 chr1 19286368 19286486 -262907178 - AluJo SINE Alu -200 112 1 181 301 72 78 chr1 19286486 19286548 -262907116 + MIR SINE MIR 117 178 -84 358 299 41 0 chr1 19286560 19286657 -262907007 + MER91C DNA MER1_type 40 140 0 522 263 18 23 chr1 19286810 19286981 -262906683 + MIR SINE MIR 87 256 -6 390 74 0 0 chr1 19288227 19288281 -262905383 + (TTCA)n Simple_repeat Simple_repeat 2 55 0 222 276 92 0 chr1 19288306 19288382 -262905282 - L2 LINE L2 -68 3204 3122 205 189 0 0 chr1 19289161 19289198 -262904466 + L3b LINE CR1 1349 1385 -198 2057 133 20 3 chr1 19289198 19289499 -262904165 + AluSx SINE Alu 1 306 -6 2200 141 3 0 chr1 19289503 19289808 -262903856 + AluSx SINE Alu 1 306 -6 600 183 127 0 chr1 19289809 19289951 -262903713 - MLT1C LTR MaLR -304 163 4 189 328 104 16 chr1 19289951 19290076 -262903588 + MIR SINE MIR 55 190 -72 225 355 10 0 chr1 19290696 19290893 -262902771 + MIR SINE MIR 57 255 -7 1672 133 0 35 chr1 19291079 19291334 -262902330 - AluSx SINE Alu -66 246 1 710 259 101 20 chr1 19291987 19292234 -262901430 + L2 LINE L2 3046 3312 -1 500 274 101 6 chr1 19292201 19292369 -262901295 - MIR SINE MIR -50 212 29 * 21 0 0 0 chr1 19292673 19292694 -262900970 + AT_rich Low_complexity Low_complexity 1 21 0 369 345 17 17 chr1 19292757 19292876 -262900788 + MIR SINE MIR 24 142 -120 949 271 155 8 chr1 19292895 19293257 -262900407 + MLT1J LTR MaLR 19 433 -78 344 274 43 34 chr1 19294096 19294213 -262899451 - MIR3 SINE MIR -20 188 71 2160 116 10 26 chr1 19294346 19294649 -262899015 + AluSq SINE Alu 3 300 -13 750 268 106 0 chr1 19294793 19294991 -262898673 + MIR SINE MIR 43 261 -1 521 172 124 2 chr1 19295137 19295285 -262898379 - MLT1J2 LTR MaLR -239 211 38 252 292 163 11 chr1 19295313 19295491 -262898173 + MIR SINE MIR 48 252 -10 271 250 22 22 chr1 19295492 19295584 -262898080 + CT-rich Low_complexity Low_complexity 5 96 0 590 308 54 13 chr1 19296109 19296333 -262897331 - MIR SINE MIR -2 260 28 238 252 26 35 chr1 19296375 19296490 -262897174 + L2 LINE L2 2917 3030 -242 757 171 11 0 chr1 19296766 19296941 -262896723 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 1946 133 35 11 chr1 19296981 19297328 -262896336 + L1MB3 LINE L1 5827 6181 -2 702 261 55 10 chr1 19297578 19297777 -262895887 - MIR SINE MIR -45 217 10 695 172 71 12 chr1 19297952 19298121 -262895543 + MER96B DNA MER1_type? 1 179 -238 539 309 20 20 chr1 19298294 19298498 -262895166 + MIR SINE MIR 21 224 -38 216 309 30 53 chr1 19299378 19299534 -262894130 - MIR SINE MIR -72 190 40 307 365 30 12 chr1 19299751 19299918 -262893746 - MIR3 SINE MIR -3 205 36 211 264 72 50 chr1 19299941 19300110 -262893554 + MIR SINE MIR 33 206 -56 531 292 57 83 chr1 19300249 19300550 -262893114 + L2 LINE L2 2966 3258 -14 259 293 136 14 chr1 19301611 19301758 -262891906 + MLT1H LTR MaLR 372 536 -13 181 267 67 0 chr1 19301831 19301891 -262891773 + MIR SINE MIR 29 92 -116 187 311 22 11 chr1 19302093 19302183 -262891481 - MIR SINE MIR -2 260 170 482 177 53 18 chr1 19302190 19302303 -262891361 + L2 LINE L2 3192 3308 -5 1052 172 49 5 chr1 19302414 19302617 -262891047 + MER20 DNA MER1_type 8 219 0 1144 237 108 45 chr1 19302693 19302900 -262890764 - MLT1D LTR MaLR 0 505 313 2119 118 36 36 chr1 19302900 19303264 -262890400 - THE1B LTR MaLR 0 364 1 1144 237 108 45 chr1 19303264 19303528 -262890136 - MLT1D LTR MaLR -192 313 4 234 289 67 0 chr1 19303583 19303673 -262889991 - MIR SINE MIR -77 185 90 448 213 5 122 chr1 19304283 19304302 -262889362 - L1MA10 LINE L1 0 6334 6316 3283 221 21 53 chr1 19304302 19304903 -262888761 - L1ME1 LINE L1 -10 6225 5679 1718 159 63 30 chr1 19304903 19305204 -262888460 + AluJo SINE Alu 2 312 0 3283 221 21 53 chr1 19305204 19305744 -262887920 - L1ME1 LINE L1 -556 5679 5123 866 248 10 0 chr1 19305728 19305926 -262887738 - L1ME1 LINE L1 -6153 243 44 * 301 331 12 60 chr1 19306028 19306194 -262887470 - MIR SINE MIR -82 180 23 376 147 15 0 chr1 19306727 19306795 -262886869 + L1MA5A LINE L1 5883 5951 -346 233 163 23 0 chr1 19306826 19306869 -262886795 - MER117 DNA MER1_type -144 53 10 732 374 108 18 chr1 19306894 19307522 -262886142 - L3 LINE CR1 -96 1481 797 712 262 144 0 chr1 19307604 19307833 -262885831 - MIR SINE MIR 0 262 1 705 249 226 24 chr1 19308278 19308699 -262884965 + MLT1K LTR MaLR 76 581 -7 269 278 69 0 chr1 19308806 19308878 -262884786 - L2 LINE L2 -47 3225 3149 578 192 54 129 chr1 19309085 19309309 -262884355 + MIR SINE MIR 43 249 -13 318 280 9 9 chr1 19310202 19310309 -262883355 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 1625 141 65 73 chr1 19310770 19311111 -262882553 + THE1C LTR MaLR 3 340 -35 1808 157 64 0 chr1 19311117 19311398 -262882266 - AluSx SINE Alu -13 299 1 1653 177 63 46 chr1 19311762 19312219 -262881445 - MLT1C LTR MaLR -2 465 1 2671 88 8 8 chr1 19312911 19313285 -262880379 - THE1C LTR MaLR 0 375 2 213 336 55 31 chr1 19313759 19313887 -262879777 + L2 LINE L2 3138 3268 -4 1878 149 0 3 chr1 19313906 19314218 -262879446 + AluSx SINE Alu 3 313 0 1401 139 48 0 chr1 19314561 19314769 -262878895 - AluJo SINE Alu -10 302 85 206 297 0 31 chr1 19314874 19314938 -262878726 - L2 LINE L2 -4 3309 3248 327 259 53 46 chr1 19314976 19315107 -262878557 - L1ME4a LINE L1 -130 5991 5860 311 314 57 8 chr1 19315108 19315232 -262878432 - MIR SINE MIR -62 200 71 230 359 69 0 chr1 19315322 19315453 -262878211 + MIR SINE MIR 108 247 -15 524 241 183 0 chr1 19315710 19315901 -262877763 + MIR SINE MIR 16 241 -21 1279 140 30 47 chr1 19316289 19316602 -262877062 - L1MB8 LINE L1 -13 6167 5858 274 239 172 30 chr1 19316629 19316763 -262876901 - MIR3 SINE MIR -37 171 19 201 163 0 0 chr1 19316857 19316906 -262876758 + CT-rich Low_complexity Low_complexity 2 50 0 368 295 192 29 chr1 19316920 19317300 -262876364 - L2 LINE L2 -37 3276 2835 2130 114 0 0 chr1 19317503 19317820 -262875844 + AluSx SINE Alu 1 317 0 609 337 36 4 chr1 19318485 19318734 -262874930 - MIR SINE MIR 0 262 6 2061 124 3 51 chr1 19318845 19319160 -262874504 + AluSx SINE Alu 1 300 -12 496 315 27 0 chr1 19320188 19320337 -262873327 - MIR SINE MIR -98 164 12 236 378 66 20 chr1 19320572 19320723 -262872941 - L2 LINE L2 0 3272 3115 246 231 0 0 chr1 19321431 19321483 -262872181 - L2 LINE L2 -344 2969 2918 277 284 39 0 chr1 19321523 19321625 -262872039 + MLT1I LTR MaLR 16 121 -288 350 255 3 24 chr1 19321756 19321853 -262871811 + MLT1H LTR MaLR 454 538 -11 199 371 19 9 chr1 19321907 19322012 -262871652 - L2 LINE L2 -433 2881 2776 243 257 86 19 chr1 19322019 19322124 -262871540 - MIR SINE MIR -63 145 34 224 318 35 0 chr1 19322231 19322316 -262871348 - MIR3 SINE MIR -48 160 73 496 320 115 35 chr1 19322915 19323281 -262870383 + MLT1I LTR MaLR 13 407 -2 230 250 42 0 chr1 19323298 19323370 -262870294 - MER103 DNA DNA -21 145 71 300 357 24 8 chr1 19323382 19323508 -262870156 + L1M4 LINE L1 3073 3200 -2946 264 115 16 33 chr1 19323509 19323570 -262870094 + (GAAAA)n Simple_repeat Simple_repeat 4 63 0 182 356 93 0 chr1 19323802 19323920 -262869744 + MIR3 SINE MIR 2 130 -78 1980 107 6 89 chr1 19324789 19325207 -262868457 + AluJb SINE Alu 1 390 0 402 140 11 32 chr1 19325639 19325732 -262867932 + GA-rich Low_complexity Low_complexity 2 92 0 286 274 39 78 chr1 19326873 19327026 -262866638 - MLT1K LTR MaLR -10 578 432 1088 280 68 38 chr1 19327079 19327479 -262866185 - MLT1K LTR MaLR -157 431 20 294 314 12 0 chr1 19327776 19327862 -262865802 + L2 LINE L2 3187 3273 -40 2550 61 0 0 chr1 19327919 19328246 -262865418 + L1PA6 LINE L1 5821 6147 -7 598 350 74 24 chr1 19328320 19328740 -262864924 - L3 LINE CR1 -295 1282 842 589 242 52 69 chr1 19328815 19328877 -262864787 - MIR SINE MIR -16 246 184 2058 120 76 3 chr1 19328877 19329168 -262864496 - AluSp SINE Alu -1 312 1 589 242 52 69 chr1 19329168 19329336 -262864328 - MIR SINE MIR -78 184 20 345 280 87 0 chr1 19330302 19330479 -262863185 + MIR SINE MIR 31 225 -37 324 261 54 9 chr1 19330533 19330644 -262863020 - MIR SINE MIR -119 143 28 458 324 54 51 chr1 19331227 19331497 -262862167 + L2 LINE L2 2952 3225 -88 2644 88 0 24 chr1 19331497 19331870 -262861794 - THE1B LTR MaLR 0 364 1 458 324 54 51 chr1 19331870 19331951 -262861713 + L2 LINE L2 3225 3304 -9 282 282 8 26 chr1 19333353 19333470 -262860194 + (ATGGTG)n Simple_repeat Simple_repeat 1 115 0 327 301 80 88 chr1 19333919 19334168 -262859496 + L2 LINE L2 3008 3254 -18 1675 176 24 40 chr1 19334216 19334592 -262859072 - MLT1A2 LTR MaLR -1 373 4 407 279 91 19 chr1 19335108 19335262 -262858402 - L2 LINE L2 0 3272 3108 333 259 288 0 chr1 19335336 19335475 -262858189 + MIR SINE MIR 7 185 -77 2192 136 0 25 chr1 19335493 19335809 -262857855 + AluSx SINE Alu 1 308 -4 186 219 0 24 chr1 19336091 19336132 -262857532 + L2 LINE L2 3136 3175 -97 255 182 18 0 chr1 19336682 19336737 -262856927 + MIR SINE MIR 82 137 -71 238 36 0 0 chr1 19337231 19337259 -262856405 + (TC)n Simple_repeat Simple_repeat 1 28 0 885 173 3 10 chr1 19337259 19337548 -262856116 + CT-rich Low_complexity Low_complexity 1 287 0 360 0 0 0 chr1 19337551 19337591 -262856073 + (CA)n Simple_repeat Simple_repeat 2 41 0 480 274 76 83 chr1 19337704 19338113 -262855551 + MLT1I LTR MaLR 3 408 -1 544 332 58 5 chr1 19339212 19339435 -262854229 - MIR SINE MIR -21 241 7 256 355 99 0 chr1 19339444 19339585 -262854079 - MIR3 SINE MIR -27 181 27 180 0 0 0 chr1 19340086 19340106 -262853558 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1391 102 4 59 chr1 19340106 19340152 -262853512 + L1PB1 LINE L1 5928 5975 -176 1924 84 114 0 chr1 19340152 19340415 -262853249 + AluSg SINE Alu 1 293 -17 1391 102 4 59 chr1 19340415 19340604 -262853060 + L1PB1 LINE L1 5975 6150 -1 2205 145 80 10 chr1 19341073 19341473 -262852191 - MSTA LTR MaLR 0 428 1 477 256 267 11 chr1 19341842 19342033 -262851631 - MIR SINE MIR -1 261 22 699 323 15 37 chr1 19342108 19342436 -262851228 - L3 LINE CR1 -79 1498 1178 321 343 42 55 chr1 19342446 19342682 -262850982 - L1ME3 LINE L1 -2 6160 5928 1060 276 49 38 chr1 19342697 19343142 -262850522 - L1ME3A LINE L1 -208 5962 5513 2195 99 7 40 chr1 19343174 19343476 -262850188 - AluSq SINE Alu -21 292 1 231 286 40 56 chr1 19343823 19343949 -262849715 + MLT1H LTR MaLR 51 174 -375 230 321 64 21 chr1 19344022 19344162 -262849502 + MLT1H LTR MaLR 403 548 -1 484 310 13 7 chr1 19344223 19344378 -262849286 - MIR SINE MIR -85 177 22 381 319 42 24 chr1 19344660 19344889 -262848775 + MIR SINE MIR 27 261 -1 2451 84 7 0 chr1 19346789 19347088 -262846576 + AluSq SINE Alu 3 303 -10 284 295 58 87 chr1 19347451 19347658 -262846006 - MIR SINE MIR -60 202 2 293 292 18 35 chr1 19348276 19348389 -262845275 - MIR SINE MIR -63 145 35 245 246 0 0 chr1 19348668 19348725 -262844939 - MIR SINE MIR -7 255 199 295 370 46 27 chr1 19349805 19350024 -262843640 + L2 LINE L2 2866 3088 -184 186 333 36 24 chr1 19350105 19350189 -262843475 - L2 LINE L2 -27 3245 3161 195 194 0 0 chr1 19350555 19350591 -262843073 + MIR SINE MIR 111 146 -116 698 314 30 11 chr1 19350919 19351054 -262842610 - L2 LINE L2 0 3313 3182 948 63 14 7 chr1 19351054 19351196 -262842468 + (TCTA)n Simple_repeat Simple_repeat 1 143 0 698 314 30 11 chr1 19351196 19351331 -262842333 - L2 LINE L2 -131 3182 3038 456 182 10 10 chr1 19351330 19351429 -262842235 - MIR SINE MIR -62 200 102 * 251 305 0 12 chr1 19352094 19352176 -262841488 - MIR SINE MIR 0 262 182 679 229 179 15 chr1 19352207 19352408 -262841256 + MIR SINE MIR 29 262 0 746 283 118 25 chr1 19352464 19352870 -262840794 - L2 LINE L2 -3 3310 2867 241 340 132 6 chr1 19353366 19353525 -262840139 - MIR SINE MIR -14 248 70 294 290 56 19 chr1 19353960 19354067 -262839597 + L2 LINE L2 3197 3307 -6 711 282 57 40 chr1 19354068 19354133 -262839531 - MIR SINE MIR 0 262 200 486 281 11 28 chr1 19354133 19354311 -262839353 - MER5B DNA MER1_type -2 176 2 711 282 57 40 chr1 19354311 19354472 -262839192 - MIR SINE MIR -62 200 32 381 43 0 0 chr1 19354925 19354972 -262838692 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 293 310 50 0 chr1 19355698 19355798 -262837866 + MIR SINE MIR 30 134 -128 221 239 0 45 chr1 19355965 19356032 -262837632 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 351 296 96 0 chr1 19456169 19456284 -262737380 - L1MC4a LINE L1 -1882 5926 5801 2222 99 3 10 chr1 19456302 19456605 -262737059 + AluSq SINE Alu 1 301 -12 758 250 31 0 chr1 19456638 19456830 -262736834 - MIR SINE MIR -46 216 19 668 258 70 55 chr1 19456854 19457125 -262736539 - L1MC4a LINE L1 -2011 5797 5523 543 274 38 6 chr1 19457494 19457651 -262736013 + MIR3 SINE MIR 47 208 0 482 349 85 13 chr1 19457712 19457947 -262735717 + MIR SINE MIR 3 254 -8 268 305 160 14 chr1 19458348 19458561 -262735103 + MIR SINE MIR 13 256 -6 412 269 208 0 chr1 19458776 19458925 -262734739 + MER5A DNA MER1_type 4 183 -6 345 24 0 0 chr1 19459816 19459858 -262733806 + (CA)n Simple_repeat Simple_repeat 2 43 0 230 140 40 20 chr1 19460126 19460176 -262733488 + G-rich Low_complexity Low_complexity 3 53 0 353 382 29 0 chr1 19460305 19460475 -262733189 - MIR SINE MIR -3 259 85 255 344 33 33 chr1 19460889 19461011 -262732653 - L3b LINE CR1 -253 1330 1209 570 341 29 0 chr1 19462105 19462310 -262731354 - MIR SINE MIR -32 230 20 348 258 71 88 chr1 19462903 19463085 -262730579 + MIR SINE MIR 22 200 -62 326 282 81 40 chr1 19463233 19463382 -262730282 + L3 LINE CR1 1417 1571 -6 237 270 107 71 chr1 19463653 19463849 -262729815 - L2 LINE L2 -19 3253 3051 213 178 0 0 chr1 19463934 19463979 -262729685 + A-rich Low_complexity Low_complexity 1 45 0 333 289 24 0 chr1 19464002 19464085 -262729579 + L2 LINE L2 3227 3311 -2 613 295 14 48 chr1 19464101 19464311 -262729353 - MIR SINE MIR -59 203 1 2280 167 10 13 chr1 19464372 19464761 -262728903 - MLT1B LTR MaLR 0 390 3 297 247 0 14 chr1 19465806 19465879 -262727785 + MIR SINE MIR 16 87 -121 1862 246 80 29 chr1 19465984 19466538 -262727126 - MLT1E LTR MaLR 0 593 15 306 0 0 0 chr1 19467557 19467591 -262726073 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 711 301 61 24 chr1 19467763 19467844 -262725820 + MIR SINE MIR 5 82 -180 2322 127 19 24 chr1 19467844 19468221 -262725443 + THE1C LTR MaLR 1 375 0 711 301 61 24 chr1 19468221 19468385 -262725279 + MIR SINE MIR 82 259 -3 207 0 0 0 chr1 19469333 19469356 -262724308 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 446 230 77 20 chr1 19469356 19469503 -262724161 - MER31B LTR ERV1 -10 651 302 942 149 106 5 chr1 19469622 19469810 -262723854 - MER2 DNA MER2_type -135 210 4 * 952 149 108 15 chr1 19469810 19469994 -262723670 - MER31A LTR ERV1 -283 202 1 252 167 21 0 chr1 19470193 19470241 -262723423 - L2 LINE L2 -1 3312 3264 294 208 115 25 chr1 19470418 19470543 -262723121 + MIR SINE MIR 8 145 -63 641 274 6 0 chr1 19470928 19471092 -262722572 + MIR SINE MIR 8 172 -90 758 190 127 19 chr1 19471133 19471291 -262722373 - FAM SINE Alu 0 175 1 1255 276 119 17 chr1 19471340 19471862 -262721802 - MLT1E LTR MaLR -18 575 1 396 248 9 28 chr1 19471891 19472000 -262721664 + L2 LINE L2 3207 3313 0 597 294 105 10 chr1 19472369 19472824 -262720840 + L2 LINE L2 2560 3055 -217 402 304 105 25 chr1 19472991 19473401 -262720263 + L2 LINE L2 2600 3058 -214 1073 173 62 13 chr1 19474384 19474610 -262719054 + L1MB2 LINE L1 5619 5855 -316 2139 181 55 0 chr1 19474610 19475011 -262718653 + L1MB2 LINE L1 5743 6167 -4 2387 114 26 63 chr1 19475547 19475925 -262717739 - THE1B LTR MaLR 0 364 1 252 0 0 0 chr1 19476356 19476384 -262717280 + (TC)n Simple_repeat Simple_repeat 2 29 0 357 316 45 7 chr1 19476686 19476841 -262716823 + MIR SINE MIR 54 214 -48 375 304 0 0 chr1 19477107 19477209 -262716455 - MIR SINE MIR -113 149 48 830 201 5 10 chr1 19478139 19478520 -262715144 + CT-rich Low_complexity Low_complexity 1 379 0 759 185 6 20 chr1 19478899 19479209 -262714455 + CT-rich Low_complexity Low_complexity 1 399 -11 687 84 0 0 chr1 19479209 19479304 -262714360 + (TTTC)n Simple_repeat Simple_repeat 4 98 0 759 185 6 20 chr1 19479304 19479316 -262714348 + CT-rich Low_complexity Low_complexity 399 410 0 1908 193 112 0 chr1 19479333 19479716 -262713948 + MSTB LTR MaLR 1 426 0 215 275 29 14 chr1 19479808 19479877 -262713787 - L2 LINE L2 -226 3046 2977 208 345 53 9 chr1 19480030 19480143 -262713521 - L2 LINE L2 -482 2832 2715 287 278 93 0 chr1 19480471 19480568 -262713096 + L2 LINE L2 3154 3259 -13 280 290 138 22 chr1 19481239 19481463 -262712201 + L2 LINE L2 2827 3076 -196 252 272 62 25 chr1 19481560 19481641 -262712023 - MIR3 SINE MIR -32 176 93 408 252 168 19 chr1 19482624 19482779 -262710885 - MIR SINE MIR -4 258 81 733 149 22 28 chr1 19482790 19482971 -262710693 + CT-rich Low_complexity Low_complexity 1 180 0 243 326 0 0 chr1 19483178 19483264 -262710400 + (TCCA)n Simple_repeat Simple_repeat 3 88 0 313 182 20 20 chr1 19483277 19483376 -262710288 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 465 369 137 10 chr1 19483405 19483798 -262709866 - L2 LINE L2 -3 3269 2827 512 333 49 11 chr1 19483955 19484187 -262709477 + MIR SINE MIR 11 250 -12 384 262 0 19 chr1 19484424 19484531 -262709133 + MER103 DNA DNA 62 166 0 207 194 0 0 chr1 19484962 19484998 -262708666 + GA-rich Low_complexity Low_complexity 1 36 0 356 275 33 8 chr1 19485080 19485200 -262708464 + MIR SINE MIR 88 210 -52 269 235 0 10 chr1 19485243 19485345 -262708319 + (TG)n Simple_repeat Simple_repeat 2 102 0 528 255 6 0 chr1 19485400 19485763 -262707901 + (TG)n Simple_repeat Simple_repeat 1 365 0 279 245 0 0 chr1 19485812 19485906 -262707758 + (TG)n Simple_repeat Simple_repeat 1 94 0 664 298 45 16 chr1 19485926 19486168 -262707496 + MIR SINE MIR 14 262 0 206 238 48 0 chr1 19486918 19486981 -262706683 - L2 LINE L2 -23 3249 3184 312 70 0 0 chr1 19486992 19487035 -262706629 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 199 256 0 0 chr1 19487035 19487074 -262706590 - MIR SINE MIR -7 255 217 * 242 146 24 0 chr1 19487040 19487081 -262706583 - L2 LINE L2 -18 3295 3254 261 0 0 0 chr1 19487889 19487918 -262705746 + (A)n Simple_repeat Simple_repeat 1 29 0 336 83 0 0 chr1 19488571 19488619 -262705045 + (TG)n Simple_repeat Simple_repeat 2 49 0 220 169 0 31 chr1 19489276 19489341 -262704323 + GA-rich Low_complexity Low_complexity 1 63 0 218 116 23 0 chr1 19489659 19489702 -262703962 + (CCG)n Simple_repeat Simple_repeat 2 45 0 213 167 37 0 chr1 19489981 19490035 -262703629 + (TG)n Simple_repeat Simple_repeat 2 57 0 186 43 0 0 chr1 19490087 19490110 -262703554 + (TG)n Simple_repeat Simple_repeat 1 23 0 270 0 0 0 chr1 19490573 19490603 -262703061 + (TG)n Simple_repeat Simple_repeat 2 31 0 194 284 111 0 chr1 19493058 19493139 -262700525 - MIR SINE MIR -77 185 96 405 328 33 0 chr1 19493603 19493725 -262699939 - L2 LINE L2 0 3313 3188 642 332 36 5 chr1 19493782 19494005 -262699659 - MIR SINE MIR -32 230 1 220 305 12 24 chr1 19494298 19494380 -262699284 + CT-rich Low_complexity Low_complexity 3 83 0 275 245 157 29 chr1 19495640 19495742 -262697922 + L2 LINE L2 3146 3260 -12 184 324 14 14 chr1 19495844 19495915 -262697749 + L3b LINE CR1 1341 1411 -172 237 296 135 27 chr1 19496012 19496196 -262697468 - MIR SINE MIR -42 166 11 241 312 210 7 chr1 19496280 19496418 -262697246 - MIR SINE MIR -18 244 79 247 259 12 49 chr1 19496767 19496848 -262696816 + L2 LINE L2 3195 3272 0 716 217 0 6 chr1 19497110 19497290 -262696374 + GA-rich Low_complexity Low_complexity 1 179 0 498 300 105 11 chr1 19497293 19497483 -262696181 - MIR SINE MIR -10 252 45 577 247 87 0 chr1 19497489 19497639 -262696025 - MER63 DNA MER1_type -273 789 1 239 297 25 22 chr1 19497733 19497825 -262695839 + MIR SINE MIR 66 160 -48 189 329 118 0 chr1 19498164 19498249 -262695415 - L2 LINE L2 -258 3014 2920 236 415 36 13 chr1 19498765 19498989 -262694675 + MIR SINE MIR 22 250 -12 362 252 10 58 chr1 19499140 19499243 -262694421 - MIR3 SINE MIR -6 202 105 180 0 0 0 chr1 19499692 19499712 -262693952 + (GGCTG)n Simple_repeat Simple_repeat 4 23 0 419 150 0 12 chr1 19500228 19500308 -262693356 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 351 113 0 0 chr1 19500469 19500522 -262693142 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 427 308 17 0 chr1 19500533 19500653 -262693011 - L2 LINE L2 -1 3312 3191 503 216 123 98 chr1 19500655 19500859 -262692805 - MER3 DNA MER1_type 0 209 1 1253 242 43 39 chr1 19500909 19501347 -262692317 - MER113 DNA MER1_type? -77 444 5 425 268 116 6 chr1 19501432 19501596 -262692068 - LTR33 LTR ERVL -2 519 338 503 291 183 8 chr1 19501628 19501869 -262691795 - LTR33 LTR ERVL -238 283 1 288 271 42 42 chr1 19501875 19501971 -262691693 + MIR SINE MIR 113 208 -54 2137 112 30 0 chr1 19503545 19503848 -262689816 - AluSx SINE Alu 0 312 1 2212 103 0 19 chr1 19503972 19504284 -262689380 - AluSx SINE Alu -6 306 1 251 338 184 37 chr1 19504399 19504535 -262689129 + MIR3 SINE MIR 17 172 -36 649 317 51 68 chr1 19504733 19505203 -262688461 - L2 LINE L2 -5 3267 2806 684 307 39 22 chr1 19505603 19505860 -262687804 - MIR SINE MIR 0 262 4 240 294 106 25 chr1 19506479 19506639 -262687025 + L2 LINE L2 2866 3038 -234 212 297 54 0 chr1 19506631 19506705 -262686959 - L2 LINE L2 -1 3271 3194 * 208 295 16 0 chr1 19506715 19506776 -262686888 + L2 LINE L2 3203 3264 -8 645 292 28 14 chr1 19506958 19507174 -262686490 - L2 LINE L2 0 3313 3095 255 355 13 39 chr1 19507696 19507851 -262685813 - MIR3 SINE MIR -21 187 37 350 264 33 0 chr1 19508449 19508540 -262685124 + MIR SINE MIR 60 153 -55 411 289 48 66 chr1 19508546 19508819 -262684845 - L2 LINE L2 -85 3228 2961 377 302 22 14 chr1 19508874 19508978 -262684686 + MIR SINE MIR 44 152 -56 1785 157 0 20 chr1 19508978 19509277 -262684387 + AluJb SINE Alu 1 293 -19 377 302 22 14 chr1 19509277 19509335 -262684329 + MIR SINE MIR 152 208 0 473 286 128 19 chr1 19509459 19509725 -262683939 - L2 LINE L2 -4 3309 3015 352 258 158 0 chr1 19509982 19510141 -262683523 - MIR SINE MIR -63 145 14 246 81 0 0 chr1 19510146 19510183 -262683481 + (TG)n Simple_repeat Simple_repeat 2 38 0 999 231 144 48 chr1 19511073 19511406 -262682258 + MLT1A1 LTR MaLR 1 365 0 215 265 255 0 chr1 19511748 19511846 -262681818 + MIR3 SINE MIR 82 204 -4 668 221 17 33 chr1 19511881 19512062 -262681602 - MIR SINE MIR -71 191 14 316 236 21 4 chr1 19512723 19512817 -262680847 + MIR SINE MIR 21 116 -92 821 243 81 22 chr1 19512916 19513256 -262680408 - MLT1J2 LTR MaLR 0 450 67 229 300 80 93 chr1 19513367 19513517 -262680147 + L2 LINE L2 3149 3296 -17 375 23 0 0 chr1 19513518 19513562 -262680102 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 285 325 42 33 chr1 19513675 19513795 -262679869 + L2 LINE L2 3147 3267 -5 406 274 36 42 chr1 19514724 19514892 -262678772 + MIR SINE MIR 40 206 -56 241 259 136 0 chr1 19515245 19515326 -262678338 + MIR SINE MIR 105 196 -66 218 348 134 0 chr1 19515327 19515439 -262678225 - L2 LINE L2 -2 3311 3185 207 162 0 0 chr1 19515495 19515532 -262678132 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 2473 137 32 7 chr1 19516533 19516583 -262677081 - MSTA LTR MaLR 0 428 381 245 73 0 24 chr1 19516583 19516624 -262677040 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8544 33 6 1 chr1 19516624 19518393 -262675271 - L1PA4 LINE L1 -8 6147 4374 2473 137 32 7 chr1 19518393 19518749 -262674915 - MSTA LTR MaLR -46 382 11 530 299 12 12 chr1 19518786 19518953 -262674711 - MIR SINE MIR -75 187 21 912 243 5 14 chr1 19519131 19519353 -262674311 - MIR SINE MIR -5 257 38 333 292 58 8 chr1 19519795 19519915 -262673749 - LTR16C LTR ERVL -8 483 358 313 271 52 10 chr1 19519943 19520039 -262673625 - LTR16C LTR ERVL -191 300 201 425 262 213 0 chr1 19520130 19520313 -262673351 - MIR SINE MIR -7 255 34 222 263 0 0 chr1 19520299 19520356 -262673308 - L2 LINE L2 -2 3270 3214 * 486 323 35 31 chr1 19520935 19521084 -262672580 + MIR SINE MIR 2 154 -108 1125 220 134 80 chr1 19521084 19521314 -262672350 + LTR16C LTR ERVL 1 217 -274 1606 154 8 11 chr1 19521314 19521580 -262672084 - AluJb SINE Alu -23 289 25 1125 220 134 80 chr1 19521580 19521812 -262671852 + LTR16C LTR ERVL 217 488 -3 486 323 35 31 chr1 19521812 19521891 -262671773 + MIR SINE MIR 154 231 -31 398 288 46 0 chr1 19521932 19522085 -262671579 + L2 LINE L2 2896 3055 -217 547 213 22 29 chr1 19522918 19523054 -262670610 + MIR3 SINE MIR 15 149 -59 1711 167 7 3 chr1 19523142 19523430 -262670234 + AluJo SINE Alu 1 289 -23 430 199 145 7 chr1 19523618 19523766 -262669898 - MIR SINE MIR -62 146 9 256 275 159 24 chr1 19524632 19524839 -262668825 + L2 LINE L2 2550 2784 -530 293 269 111 0 chr1 19526117 19526225 -262667439 + MIR SINE MIR 16 135 -127 257 293 192 12 chr1 19527367 19527534 -262666130 + MIR SINE MIR 60 256 -6 414 272 55 0 chr1 19528146 19528283 -262665381 - MIR SINE MIR -56 206 45 725 335 95 16 chr1 19528302 19529006 -262664658 + L2 LINE L2 2445 3201 -112 944 243 33 25 chr1 19529033 19529149 -262664515 - MIR SINE MIR -17 245 131 2674 92 0 42 chr1 19529149 19529486 -262664178 + THE1B LTR MaLR 1 322 -42 2414 56 0 7 chr1 19529486 19529788 -262663876 - AluY SINE Alu -11 300 1 2674 92 0 42 chr1 19529788 19529830 -262663834 + THE1B LTR MaLR 322 364 0 944 243 33 25 chr1 19529830 19529956 -262663708 - MIR SINE MIR -131 131 1 495 288 0 0 chr1 19529956 19530070 -262663594 + L2 LINE L2 3200 3313 0 350 356 90 0 chr1 19531090 19531278 -262662386 + MIR SINE MIR 58 262 0 1678 147 11 11 chr1 19531326 19531599 -262662065 + AluJo SINE Alu 1 273 -39 195 256 144 11 chr1 19531670 19531760 -262661904 + MIR SINE MIR 127 228 -34 202 220 20 0 chr1 19531802 19531852 -262661812 - L2 LINE L2 -20 3252 3202 255 303 229 0 chr1 19532443 19532552 -262661112 + L2 LINE L2 2925 3058 -255 1032 260 43 54 chr1 19532559 19532943 -262660721 - MLT1J2 LTR MaLR -6 444 80 263 314 134 0 chr1 19532985 19533157 -262660507 - MLT1J2 LTR MaLR -255 195 1 435 238 56 8 chr1 19533201 19533327 -262660337 + MER94 DNA DNA 3 134 0 444 288 42 0 chr1 19533386 19533504 -262660160 + L2 LINE L2 3191 3313 0 201 209 15 90 chr1 19533725 19533792 -262659872 - L2 LINE L2 -241 3072 3011 372 354 25 13 chr1 19533803 19533961 -262659703 + MIR SINE MIR 21 180 -82 402 302 94 0 chr1 19534189 19534348 -262659316 + MIR SINE MIR 60 233 -29 314 326 61 0 chr1 19534948 19535080 -262658584 - MIR SINE MIR -62 200 61 278 303 30 10 chr1 19535273 19535372 -262658292 - MIR SINE MIR -64 144 44 257 171 45 23 chr1 19536118 19536206 -262657458 + CT-rich Low_complexity Low_complexity 5 94 0 349 238 107 0 chr1 19536665 19536780 -262656884 + MIR SINE MIR 49 187 -32 289 281 167 18 chr1 19537738 19537852 -262655812 - MIR SINE MIR -59 149 19 1826 128 3 14 chr1 19538226 19538508 -262655156 + AluSx SINE Alu 29 307 -5 338 232 0 0 chr1 19539044 19539113 -262654551 - MIR SINE MIR -118 144 76 279 301 39 39 chr1 19539203 19539306 -262654358 + L2 LINE L2 3080 3182 -90 267 264 22 33 chr1 19539410 19539501 -262654163 + L2 LINE L2 3098 3187 -85 324 200 75 0 chr1 19540044 19540124 -262653540 + MIR SINE MIR 46 131 -131 269 286 110 53 chr1 19540321 19540566 -262653098 + L2 LINE L2 2994 3252 -20 1932 100 129 62 chr1 19540741 19541039 -262652625 + THE1B LTR MaLR 1 326 -38 2064 101 7 7 chr1 19541039 19541335 -262652329 - AluSg1 SINE Alu -13 296 1 1932 100 129 62 chr1 19541335 19541377 -262652287 + THE1B LTR MaLR 326 364 0 302 290 155 21 chr1 19541584 19541777 -262651887 + MIR SINE MIR 44 262 0 199 301 97 0 chr1 19541864 19541967 -262651697 + MIR SINE MIR 60 172 -90 188 250 0 0 chr1 19542648 19542692 -262650972 - MIR SINE MIR -101 161 118 629 218 78 58 chr1 19543146 19543335 -262650329 + MIR SINE MIR 3 202 -60 1906 188 55 60 chr1 19543335 19543381 -262650283 + MER47B DNA MER2_type 1 46 -2277 1707 172 3 28 chr1 19543381 19543700 -262649964 - AluJb SINE Alu -1 311 1 1906 188 55 60 chr1 19543700 19544073 -262649591 + MER47B DNA MER2_type 46 418 0 629 218 78 58 chr1 19544073 19544136 -262649528 + MIR SINE MIR 202 262 0 287 297 142 7 chr1 19544496 19544651 -262649013 + MIR SINE MIR 87 262 0 377 217 19 4 chr1 19545927 19546025 -262647639 + MIR SINE MIR 63 146 -62 436 308 94 9 chr1 19546602 19546826 -262646838 - MIR SINE MIR 0 262 20 530 255 141 44 chr1 19547217 19547515 -262646149 + L2 LINE L2 2945 3271 -1 371 306 82 31 chr1 19549168 19549364 -262644300 - MIR SINE MIR -6 256 51 1665 161 54 0 chr1 19549562 19549842 -262643822 - AluSx SINE Alu -17 295 1 500 344 156 26 chr1 19549853 19550513 -262643151 + L2 LINE L2 2013 2758 -556 192 211 0 0 chr1 19550563 19550601 -262643063 + L2 LINE L2 3231 3268 -4 256 245 47 57 chr1 19551203 19551309 -262642355 - MIR SINE MIR -69 193 89 243 0 0 0 chr1 19551416 19551443 -262642221 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 228 319 39 58 chr1 19551740 19551947 -262641717 + MIR SINE MIR 33 235 -27 454 222 34 8 chr1 19551950 19552067 -262641597 - MIR SINE MIR -87 175 56 377 350 45 5 chr1 19553119 19553339 -262640325 - L3 LINE CR1 -103 1474 1246 518 345 36 14 chr1 19553922 19554142 -262639522 + MIR SINE MIR 20 244 -18 411 311 17 28 chr1 19554743 19554767 -262638897 + MIR SINE MIR 57 80 -182 1935 202 58 22 chr1 19554767 19555218 -262638446 - MLT1C LTR MaLR 0 467 1 411 311 17 28 chr1 19555218 19555373 -262638291 + MIR SINE MIR 80 234 -28 328 336 54 13 chr1 19555585 19555628 -262638036 - MIR SINE MIR -50 212 172 485 115 26 0 chr1 19555628 19555706 -262637958 - MADE1 DNA Mariner 0 80 1 328 336 54 13 chr1 19555706 19555811 -262637853 - MIR SINE MIR -90 172 58 2034 142 13 0 chr1 19556682 19556985 -262636679 + AluSg SINE Alu 1 307 -3 907 314 80 32 chr1 19557106 19557568 -262636096 + LTR16C LTR ERVL 8 491 0 372 269 103 45 chr1 19557571 19557727 -262635937 + MIR SINE MIR 7 171 -91 197 274 9 127 chr1 19557757 19557969 -262635695 + L2 LINE L2 3089 3275 -38 2695 42 0 6 chr1 19558104 19558417 -262635247 - AluY SINE Alu 0 311 1 409 320 146 19 chr1 19558571 19558777 -262634887 - MIR SINE MIR 0 262 31 333 68 0 0 chr1 19558884 19558928 -262634736 + (TG)n Simple_repeat Simple_repeat 1 44 0 504 202 53 9 chr1 19559459 19559573 -262634091 - L2 LINE L2 -1 3312 3194 377 292 153 38 chr1 19560799 19561008 -262632656 + MIR SINE MIR 18 250 -12 1539 221 40 42 chr1 19561016 19561519 -262632145 + MLT1D LTR MaLR 1 502 -3 206 231 31 15 chr1 19561985 19562050 -262631614 - L2 LINE L2 -191 3081 3016 291 215 69 132 chr1 19562541 19562685 -262630979 - MER5A DNA MER1_type -1 188 54 385 260 110 13 chr1 19562844 19562998 -262630666 - MIR SINE MIR -18 244 76 202 161 0 32 chr1 19563768 19563830 -262629834 + GA-rich Low_complexity Low_complexity 2 61 0 840 172 32 6 chr1 19563957 19564114 -262629550 - MER20 DNA MER1_type -25 194 34 499 304 52 59 chr1 19564188 19564494 -262629170 + MLT1H LTR MaLR 51 354 -195 214 282 27 27 chr1 19564694 19564804 -262628860 - L2 LINE L2 -339 2975 2866 2068 153 0 31 chr1 19564950 19565271 -262628393 + AluJb SINE Alu 1 311 -1 518 319 83 13 chr1 19565276 19565505 -262628159 - MIR SINE MIR 0 262 18 247 297 36 65 chr1 19565931 19566000 -262627664 - MER5B DNA MER1_type -38 140 75 1942 175 0 3 chr1 19566000 19566303 -262627361 - AluSx SINE Alu -10 302 1 247 297 36 65 chr1 19566303 19566371 -262627293 - MER5B DNA MER1_type -103 75 7 194 254 146 62 chr1 19566539 19566669 -262626995 + L2 LINE L2 2309 2449 -865 774 261 38 38 chr1 19566682 19566920 -262626744 + MIR SINE MIR 15 252 -10 493 271 52 102 chr1 19566923 19567237 -262626427 + L2 LINE L2 2453 2742 -572 2517 49 3 16 chr1 19567237 19567543 -262626121 + AluYb8 SINE Alu 1 302 -16 493 271 52 102 chr1 19567543 19567649 -262626015 + L2 LINE L2 2742 2852 -462 201 94 0 0 chr1 19567651 19567683 -262625981 + (TCTCTG)n Simple_repeat Simple_repeat 3 34 0 1251 238 127 57 chr1 19568049 19568562 -262625102 + MLT1H LTR MaLR 1 549 0 222 37 0 0 chr1 19569209 19569236 -262624428 + (GA)n Simple_repeat Simple_repeat 1 27 0 2818 171 19 7 chr1 19569693 19570232 -262623432 + L1MB2 LINE L1 5625 6169 -2 2330 101 0 3 chr1 19570241 19570539 -262623125 + AluSx SINE Alu 1 297 -15 1110 126 0 19 chr1 19570550 19570709 -262622955 + FRAM SINE Alu 1 152 -24 684 191 0 0 chr1 19571482 19571655 -262622009 + (CCA)n Simple_repeat Simple_repeat 1 173 0 181 237 0 21 chr1 19571682 19571775 -262621889 + (CCA)n Simple_repeat Simple_repeat 1 91 0 406 252 81 0 chr1 19571818 19571929 -262621735 - MIR SINE MIR -26 236 117 450 157 0 0 chr1 19573645 19573728 -262619936 + (CACCAT)n Simple_repeat Simple_repeat 4 86 0 688 139 23 17 chr1 19573743 19573916 -262619748 + (CACCAT)n Simple_repeat Simple_repeat 3 176 0 860 127 7 45 chr1 19573931 19574504 -262619160 + (CACCAT)n Simple_repeat Simple_repeat 1 551 0 870 182 0 0 chr1 19574528 19574886 -262618778 + (CCA)n Simple_repeat Simple_repeat 1 358 0 954 101 0 43 chr1 19574894 19575082 -262618582 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 857 145 17 0 chr1 19575116 19575288 -262618376 + (CACCAT)n Simple_repeat Simple_repeat 5 179 0 227 364 18 9 chr1 19575805 19575915 -262617749 + MIR SINE MIR 74 184 -78 681 328 21 12 chr1 19576038 19576279 -262617385 - MIR SINE MIR 0 262 20 206 267 13 13 chr1 19577397 19577472 -262616192 + (CCCA)n Simple_repeat Simple_repeat 2 76 0 198 233 0 0 chr1 19577529 19577589 -262616075 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 495 48 0 0 chr1 19577666 19577728 -262615936 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 190 238 0 131 chr1 19577867 19577951 -262615713 - L2 LINE L2 -184 3088 3016 196 365 14 0 chr1 19578029 19578103 -262615561 - L2 LINE L2 -64 3208 3134 194 276 171 16 chr1 19578424 19578547 -262615117 + MIR3 SINE MIR 7 148 -60 1131 151 33 5 chr1 19579311 19579523 -262614141 + MER20 DNA MER1_type 1 218 -1 325 332 112 31 chr1 19580416 19580702 -262612962 - L2 LINE L2 0 3313 3005 2452 68 3 16 chr1 19581812 19582122 -262611542 + AluY SINE Alu 1 306 -5 186 327 0 37 chr1 19583227 19583334 -262610330 - MIR SINE MIR -54 208 106 387 133 214 127 chr1 19584095 19584268 -262609396 + MER53 DNA DNA 2 189 0 1992 127 25 32 chr1 19584324 19584638 -262609026 + AluSx SINE Alu 1 312 0 264 154 15 31 chr1 19584647 19584712 -262608952 + T-rich Low_complexity Low_complexity 2 65 0 246 164 0 0 chr1 19584914 19584969 -262608695 + CT-rich Low_complexity Low_complexity 1 55 0 276 273 0 39 chr1 19585006 19585083 -262608581 - L2 LINE L2 -6 3307 3234 528 329 12 6 chr1 19585231 19585395 -262608269 - MIR SINE MIR -78 184 20 324 195 13 52 chr1 19585396 19585550 -262608114 + CT-rich Low_complexity Low_complexity 3 150 0 681 218 131 51 chr1 19585580 19585855 -262607809 - L1MC/D LINE L1 -2221 5587 5291 3013 43 0 0 chr1 19585870 19586244 -262607420 - L1PA5 LINE L1 -11 6143 5770 2055 168 2 45 chr1 19586297 19586697 -262606967 - MLT1B LTR MaLR 0 390 8 4556 63 3 2 chr1 19586697 19587287 -262606377 + LTR10C LTR ERV1 1 591 0 471 298 46 32 chr1 19587505 19587723 -262605941 + MIR SINE MIR 26 246 -16 446 305 39 26 chr1 19588428 19588582 -262605082 - MIR SINE MIR -66 196 41 215 305 153 8 chr1 19589286 19589404 -262604260 - L3b LINE CR1 -228 1355 1221 437 252 161 7 chr1 19589826 19589969 -262603695 - MIR SINE MIR -48 214 50 219 343 0 0 chr1 19591535 19591602 -262602062 - MER5A DNA MER1_type -32 157 91 838 259 11 34 chr1 19591602 19591865 -262601799 - MIR SINE MIR 0 262 6 378 320 193 0 chr1 19592604 19592801 -262600863 + MIR SINE MIR 4 238 -24 670 277 106 39 chr1 19592827 19593347 -262600317 + MLT1L LTR MaLR 6 584 -31 393 272 103 46 chr1 19593430 19593496 -262600168 - MIR SINE MIR -50 212 151 1683 174 41 46 chr1 19593496 19593888 -262599776 - MLT1B LTR MaLR 0 390 1 393 272 103 46 chr1 19593888 19594016 -262599648 - MIR SINE MIR -111 151 7 21 57 0 0 chr1 19594087 19594122 -262599542 + AT_rich Low_complexity Low_complexity 1 35 0 2433 94 3 0 chr1 19594130 19594438 -262599226 + AluY SINE Alu 1 309 -2 1642 218 21 5 chr1 19594443 19594824 -262598840 - L1ME1 LINE L1 -4 6162 5776 192 77 0 0 chr1 19594838 19594864 -262598800 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2258 105 0 3 chr1 19594883 19595178 -262598486 - AluSx SINE Alu -18 294 1 203 311 48 39 chr1 19595405 19595508 -262598156 - L3b LINE CR1 -138 1445 1342 584 201 137 26 chr1 19595792 19596026 -262597638 + LTR16C LTR ERVL 232 491 0 219 333 0 0 chr1 19596134 19596197 -262597467 - MIR SINE MIR -150 112 50 499 294 19 6 chr1 19596285 19596445 -262597219 + MIR3 SINE MIR 30 191 -17 293 320 75 33 chr1 19597466 19597681 -262595983 + MIR SINE MIR 2 235 -27 197 170 170 0 chr1 19598109 19598162 -262595502 - MIR SINE MIR -99 163 102 396 0 0 0 chr1 19598518 19598562 -262595102 + (TG)n Simple_repeat Simple_repeat 2 45 0 238 300 0 14 chr1 19599199 19599269 -262594395 + GA-rich Low_complexity Low_complexity 3 71 0 784 246 27 32 chr1 19599501 19599721 -262593943 + MIR SINE MIR 44 262 0 764 186 113 65 chr1 19600502 19600749 -262592915 + ORSL DNA AcHobo 4 262 -13 413 332 89 51 chr1 19601056 19601426 -262592238 + L2 LINE L2 2910 3293 -20 180 0 0 0 chr1 19601429 19601449 -262592215 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 711 266 19 24 chr1 19601827 19602034 -262591630 - MIR SINE MIR -13 249 44 209 299 45 0 chr1 19602079 19602146 -262591518 + MIR3 SINE MIR 88 157 -51 198 196 36 0 chr1 19602558 19602614 -262591050 + MIR SINE MIR 145 202 -60 294 294 43 0 chr1 19603044 19603136 -262590528 - MIR SINE MIR -128 134 39 2254 128 0 7 chr1 19603295 19603600 -262590064 - AluSx SINE Alu -9 303 1 273 75 0 0 chr1 19603770 19603810 -262589854 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 406 145 48 124 chr1 19604696 19604841 -262588823 - MLT1H LTR MaLR -10 539 406 396 279 132 0 chr1 19605145 19605274 -262588390 + MIR SINE MIR 3 148 -114 243 355 8 24 chr1 19605483 19605607 -262588057 - L3b LINE CR1 -316 1267 1146 560 225 150 25 chr1 19605980 19606180 -262587484 + MIR SINE MIR 37 261 -1 225 235 235 0 chr1 19606203 19606305 -262587359 - MIR3 SINE MIR -72 136 11 873 227 36 23 chr1 19606720 19606940 -262586724 + MIR SINE MIR 8 230 -32 256 279 68 60 chr1 19606938 19607123 -262586541 + MIR SINE MIR 41 223 -39 * 256 361 129 13 chr1 19607511 19607821 -262585843 + L2 LINE L2 2440 2785 -529 781 229 5 32 chr1 19608146 19608334 -262585330 - MLT1A2 LTR MaLR -11 363 181 237 83 0 0 chr1 19608340 19608376 -262585288 + (GA)n Simple_repeat Simple_repeat 2 37 0 724 135 5 135 chr1 19608399 19608436 -262585228 - MLT1A2 LTR MaLR -213 161 121 1939 160 33 30 chr1 19608436 19608799 -262584865 - THE1B LTR MaLR 0 364 1 724 135 5 135 chr1 19608799 19608946 -262584718 - MLT1A2 LTR MaLR -253 121 1 280 301 24 0 chr1 19608950 19609033 -262584631 + L2 LINE L2 3187 3271 -1 213 196 0 0 chr1 19609035 19609081 -262584583 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 621 267 78 14 chr1 19609778 19609995 -262583669 - MIR SINE MIR -19 243 13 191 299 89 25 chr1 19610157 19610314 -262583350 - MIR3 SINE MIR -4 204 38 3318 118 22 2 chr1 19610482 19610973 -262582691 - MER1A DNA MER1_type 0 529 29 237 150 0 0 chr1 19611100 19611140 -262582524 - MER1A DNA MER1_type -486 41 2 288 285 139 0 chr1 19611206 19611350 -262582314 + LTR16A LTR ERVL 113 276 -174 243 261 104 30 chr1 19611469 19611603 -262582061 + MIR SINE MIR 109 252 -10 363 270 113 9 chr1 19612326 19612441 -262581223 + MIR SINE MIR 80 206 -56 307 284 116 19 chr1 19613207 19613362 -262580302 + MIR SINE MIR 23 192 -70 416 293 168 21 chr1 19613411 19613602 -262580062 + MIR SINE MIR 22 240 -22 251 315 61 48 chr1 19613800 19613965 -262579699 + MIR SINE MIR 40 206 -56 357 309 158 19 chr1 19614003 19614474 -262579190 - L2 LINE L2 0 3313 2743 3089 76 25 5 chr1 19614477 19614912 -262578752 - MLT2A1 LTR ERVL 0 444 1 184 316 51 25 chr1 19615066 19615145 -262578519 + L3 LINE CR1 1496 1576 -1 1599 226 68 14 chr1 19615450 19615888 -262577776 - MLT1C LTR MaLR 0 467 6 2176 147 23 0 chr1 19615925 19616273 -262577391 - THE1B LTR MaLR -8 356 1 280 278 35 35 chr1 19616294 19616409 -262577255 - MIR3 SINE MIR -91 117 3 202 300 93 52 chr1 19616565 19616835 -262576829 + L2 LINE L2 2960 3240 -32 199 316 36 72 chr1 19616923 19617062 -262576602 - L2 LINE L2 -114 3158 3025 686 248 32 12 chr1 19617702 19617946 -262575718 - MIR SINE MIR -8 254 5 272 225 25 38 chr1 19618484 19618564 -262575100 + MIR SINE MIR 46 124 -84 732 249 101 18 chr1 19618767 19618984 -262574680 + MIR SINE MIR 22 256 -6 202 293 0 0 chr1 19619052 19619110 -262574554 + MIR SINE MIR 90 147 -115 371 344 46 0 chr1 19620344 19620495 -262573169 + MIR SINE MIR 47 204 -58 246 360 96 28 chr1 19621235 19621413 -262572251 + MIR SINE MIR 48 237 -25 1363 217 104 30 chr1 19621441 19621874 -262571790 - MLT1C LTR MaLR 0 467 3 1913 145 82 20 chr1 19623523 19623691 -262569973 - THE1C LTR MaLR -1 374 218 222 37 0 0 chr1 19623691 19623718 -262569946 + (GA)n Simple_repeat Simple_repeat 1 27 0 1913 145 82 20 chr1 19623718 19623901 -262569763 - THE1C LTR MaLR -157 218 1 2078 128 0 0 chr1 19624417 19624727 -262568937 - AluSx SINE Alu 0 310 1 574 239 75 45 chr1 19624899 19625100 -262568564 - MER58C DNA MER1_type -2 213 7 208 368 97 0 chr1 19625107 19625221 -262568443 + MIR SINE MIR 112 236 -26 737 251 90 5 chr1 19625247 19625458 -262568206 - MIR SINE MIR -17 245 17 374 149 21 21 chr1 19626220 19626314 -262567350 + GA-rich Low_complexity Low_complexity 1 94 0 250 224 60 26 chr1 19626321 19626437 -262567227 + L1ME4a LINE L1 5993 6112 -9 993 272 72 44 chr1 19627071 19627385 -262566279 - L2 LINE L2 -21 3292 2988 2013 157 3 3 chr1 19627385 19627684 -262565980 + AluJo SINE Alu 1 299 -13 993 272 72 44 chr1 19627684 19627964 -262565700 - L2 LINE L2 -325 2988 2679 2104 204 132 26 chr1 19627979 19628558 -262565106 - MLT1E2 LTR MaLR 0 626 1 180 0 0 0 chr1 19629494 19629514 -262564150 + (TA)n Simple_repeat Simple_repeat 2 21 0 2233 60 7 53 chr1 19629514 19629814 -262563850 - AluY SINE Alu -25 286 1 1254 225 80 46 chr1 19629841 19630277 -262563387 + L1ME3 LINE L1 5701 6151 -11 195 309 55 0 chr1 19630360 19630415 -262563249 - MIR SINE MIR -88 174 117 2157 124 0 22 chr1 19630562 19630877 -262562787 - AluSg SINE Alu -2 308 1 1035 204 14 5 chr1 19631739 19631955 -262561709 - MER20 DNA MER1_type 0 219 2 1960 149 0 14 chr1 19631975 19632287 -262561377 - AluSx SINE Alu 0 308 1 439 370 19 14 chr1 19633266 19633482 -262560182 - MIR SINE MIR -33 229 13 277 263 79 56 chr1 19633544 19633737 -262559927 - MIR SINE MIR -46 216 16 396 343 23 11 chr1 19634070 19634245 -262559419 + MIR3 SINE MIR 17 193 -15 710 256 189 36 chr1 19634413 19634714 -262558950 - MLT1J2 LTR MaLR -19 431 85 203 264 78 39 chr1 19635028 19635157 -262558507 + MIR SINE MIR 86 219 -43 1752 130 173 35 chr1 19635636 19635838 -262557826 - MSTA LTR MaLR 0 428 255 2133 96 13 32 chr1 19635838 19636152 -262557512 - AluSc SINE Alu -1 308 1 1752 130 173 35 chr1 19636152 19636325 -262557339 - MSTA LTR MaLR -173 255 1 510 313 52 74 chr1 19636373 19636938 -262556726 - L2 LINE L2 0 3272 2717 187 327 39 0 chr1 19637034 19637086 -262556578 - L2 LINE L2 -1 3271 3218 267 328 104 52 chr1 19637311 19637713 -262555951 - L2 LINE L2 -338 2976 2554 382 350 95 16 chr1 19638692 19639061 -262554603 - L2 LINE L2 -20 3252 2855 380 319 14 7 chr1 19639565 19639709 -262553955 - MIR3 SINE MIR -48 160 16 308 155 0 17 chr1 19641228 19641286 -262552378 + MIR SINE MIR 76 132 -76 429 339 18 12 chr1 19642536 19642704 -262550960 - L3 LINE CR1 -114 1463 1295 365 321 0 0 chr1 19642787 19642896 -262550768 - MER81 DNA DNA -5 109 1 209 231 15 46 chr1 19643083 19643148 -262550516 + MIR SINE MIR 36 98 -164 560 264 71 30 chr1 19643325 19643344 -262550320 + MIR SINE MIR 46 63 -199 1930 124 16 72 chr1 19643344 19643730 -262549934 - THE1B LTR MaLR 0 364 1 560 264 71 30 chr1 19643730 19643907 -262549757 + MIR SINE MIR 63 250 -12 2229 107 17 0 chr1 19644417 19644708 -262548956 - AluSx SINE Alu -6 306 11 576 0 0 0 chr1 19644709 19644773 -262548891 + (TTTCC)n Simple_repeat Simple_repeat 1 64 0 859 54 20 34 chr1 19644774 19644923 -262548741 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 216 260 0 65 chr1 19645305 19645382 -262548282 + MIR SINE MIR 46 117 -91 214 320 27 27 chr1 19645501 19645576 -262548088 - L2 LINE L2 -48 3224 3150 945 204 87 0 chr1 19645841 19646047 -262547617 + MER58A DNA MER1_type 1 224 0 2150 139 13 3 chr1 19646123 19646432 -262547232 + AluSx SINE Alu 1 312 0 506 285 15 0 chr1 19646434 19646571 -262547093 - MER45A DNA AcHobo -7 171 33 322 304 43 43 chr1 19647227 19647457 -262546207 + LTR33 LTR ERVL 292 521 0 910 272 104 39 chr1 19647569 19648003 -262545661 - MLT1H1 LTR MaLR -93 462 1 229 298 113 24 chr1 19648403 19648527 -262545137 + MIR3 SINE MIR 12 146 -62 198 271 168 9 chr1 19648552 19648659 -262545005 + MIR SINE MIR 23 146 -62 272 254 0 0 chr1 19648813 19648872 -262544792 + L2 LINE L2 3206 3264 -8 1493 255 33 43 chr1 19648903 19649412 -262544252 + L1ME2 LINE L1 5651 6154 -10 360 0 0 0 chr1 19649582 19649622 -262544042 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2286 94 0 3 chr1 19649624 19649911 -262543753 - AluSx SINE Alu -26 286 1 21 57 0 0 chr1 19649919 19649954 -262543710 + AT_rich Low_complexity Low_complexity 1 35 0 393 272 103 46 chr1 19650025 19650153 -262543511 + MIR SINE MIR 7 151 -111 1643 174 43 46 chr1 19650153 19650544 -262543120 + MLT1B LTR MaLR 1 390 0 393 272 103 46 chr1 19650544 19650610 -262543054 + MIR SINE MIR 151 212 -50 670 277 106 39 chr1 19650693 19651213 -262542451 - MLT1L LTR MaLR -31 584 6 378 320 193 0 chr1 19651239 19651436 -262542228 - MIR SINE MIR -24 238 4 977 270 8 15 chr1 19652178 19652437 -262541227 + MIR SINE MIR 6 262 0 281 299 0 0 chr1 19652437 19652504 -262541160 + MER5A DNA MER1_type 91 157 -32 382 306 140 11 chr1 19654463 19654649 -262539015 + MIR SINE MIR 20 229 -33 436 168 0 59 chr1 19654667 19654741 -262538923 - L2 LINE L2 -1 3312 3244 2017 130 144 8 chr1 19654741 19655117 -262538547 - MSTA LTR MaLR -1 427 1 436 168 0 59 chr1 19655117 19655143 -262538521 - L2 LINE L2 -69 3244 3218 1540 214 58 16 chr1 19655320 19655749 -262537915 + L1MDa LINE L1 1011 1457 -5083 834 279 67 13 chr1 19655772 19656148 -262537516 - L2 LINE L2 -102 3211 2816 474 289 53 0 chr1 19656157 19656344 -262537320 - L2 LINE L2 -657 2657 2461 383 341 93 20 chr1 19656827 19657170 -262536494 - L2 LINE L2 -20 3252 2885 180 0 0 0 chr1 19657375 19657395 -262536269 + (CCA)n Simple_repeat Simple_repeat 1 20 0 445 237 9 18 chr1 19657564 19657678 -262535986 - MER81 DNA DNA -1 113 1 474 219 124 23 chr1 19658250 19658409 -262535255 - MIR3 SINE MIR -20 188 8 237 325 81 24 chr1 19658880 19659003 -262534661 - MIR SINE MIR -106 156 27 239 372 14 28 chr1 19659736 19659881 -262533783 + MIR SINE MIR 13 155 -107 264 306 0 0 chr1 19659972 19660034 -262533630 - L2 LINE L2 -107 3165 3104 424 200 229 43 chr1 19660355 19660495 -262533169 + MER96 DNA MER1_type? 1 166 -9 1053 273 102 8 chr1 19660617 19660980 -262532684 + L2 LINE L2 2916 3312 -1 2155 122 0 0 chr1 19661100 19661378 -262532286 + AluSx SINE Alu 2 279 -33 216 0 0 0 chr1 19661379 19661403 -262532261 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 396 0 0 0 chr1 19661402 19661446 -262532218 + (CA)n Simple_repeat Simple_repeat 1 44 0 663 227 109 27 chr1 19662168 19662388 -262531276 + MIR SINE MIR 6 243 -19 1219 269 18 0 chr1 19665097 19665432 -262528232 - MER58B DNA MER1_type 0 341 1 974 205 25 0 chr1 19667872 19668072 -262525592 - MER3 DNA MER1_type 0 209 5 351 0 0 0 chr1 19668238 19668277 -262525387 + (TG)n Simple_repeat Simple_repeat 1 39 0 464 269 36 5 chr1 19668723 19668891 -262524773 - MIR SINE MIR -3 259 87 207 303 173 67 chr1 19668895 19669103 -262524561 + L2 LINE L2 3043 3272 0 188 311 149 37 chr1 19669783 19669944 -262523720 + MIR SINE MIR 83 261 -1 2170 109 62 11 chr1 19670786 19671143 -262522521 - THE1C LTR MaLR 0 375 1 319 342 13 34 chr1 19671348 19671497 -262522167 + MER5B DNA MER1_type 1 146 -32 1634 300 135 36 chr1 19671565 19672419 -262521245 - L2 LINE L2 -1 3312 2263 2231 124 28 3 chr1 19672419 19672774 -262520890 + THE1B LTR MaLR 1 364 0 1634 300 135 36 chr1 19672774 19673262 -262520402 - L2 LINE L2 -1050 2263 1825 351 320 0 0 chr1 19675127 19675227 -262518437 + MIR3 SINE MIR 72 171 -37 510 344 25 27 chr1 19675713 19676074 -262517590 + L2 LINE L2 2683 3036 -236 245 246 36 138 chr1 19676225 19676318 -262517346 - L2 LINE L2 -1 3312 3254 1804 166 0 19 chr1 19676318 19676625 -262517039 + AluJb SINE Alu 9 309 -3 245 246 36 138 chr1 19676625 19676755 -262516909 - L2 LINE L2 -59 3254 3112 234 363 29 0 chr1 19676799 19676901 -262516763 + L2 LINE L2 3174 3278 -35 276 91 0 0 chr1 19676907 19676951 -262516713 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 474 330 67 18 chr1 19676965 19677189 -262516475 + L3 LINE CR1 1335 1569 -8 194 346 33 33 chr1 19677505 19677658 -262516006 + L2 LINE L2 2696 2848 -466 367 315 9 0 chr1 19677741 19677849 -262515815 - MIR SINE MIR -134 128 20 422 329 55 0 chr1 19678048 19678212 -262515452 - MIR SINE MIR -35 227 55 23 0 0 0 chr1 19678769 19678792 -262514872 + AT_rich Low_complexity Low_complexity 1 23 0 758 281 61 38 chr1 19679498 19679925 -262513739 + L2 LINE L2 2298 2734 -580 191 291 0 36 chr1 19680246 19680301 -262513363 + MIR SINE MIR 119 171 -91 355 288 18 9 chr1 19680314 19680425 -262513239 - MER94 DNA DNA -7 127 16 237 258 16 0 chr1 19680914 19680976 -262512688 - L2 LINE L2 -1 3312 3250 326 288 68 41 chr1 19681009 19681155 -262512509 - L1M4 LINE L1 -1820 4326 4177 607 279 6 13 chr1 19681192 19681350 -262512314 + MIR SINE MIR 30 186 -76 550 306 70 12 chr1 19681371 19681701 -262511963 - L1M4 LINE L1 -1990 4156 3808 458 305 123 13 chr1 19681740 19681976 -262511688 - L1M4 LINE L1 -1727 4419 4158 279 192 0 0 chr1 19681992 19682044 -262511620 - L2 LINE L2 -12 3260 3209 300 292 0 0 chr1 19683269 19683358 -262510306 - MIR SINE MIR -97 165 77 565 75 0 0 chr1 19683360 19683440 -262510224 - Alu SINE Alu -7 302 223 222 256 19 0 chr1 19683867 19683925 -262509739 + MIR SINE MIR 94 147 -61 931 259 56 4 chr1 19683997 19684229 -262509435 - MIR SINE MIR 0 262 19 469 330 53 42 chr1 19685024 19685309 -262508355 - L2 LINE L2 0 3272 2985 243 356 90 31 chr1 19685391 19685680 -262507984 - L2 LINE L2 -449 2865 2560 545 124 10 0 chr1 19686351 19686448 -262507216 + (TCCC)n Simple_repeat Simple_repeat 3 100 0 361 210 248 34 chr1 19686914 19687088 -262506576 + MIR SINE MIR 19 225 -37 * 711 320 151 3 chr1 19687060 19687625 -262506039 - L2 LINE L2 -7 3306 2656 847 254 108 21 chr1 19687625 19688034 -262505630 - MLT1J2 LTR MaLR 0 421 3 254 321 0 0 chr1 19688083 19688167 -262505497 - L2 LINE L2 -681 2633 2550 2539 73 3 0 chr1 19688360 19688663 -262505001 - AluY SINE Alu -7 304 1 250 319 43 55 chr1 19688689 19688852 -262504812 - MIR3 SINE MIR -3 205 45 509 341 19 12 chr1 19689051 19689288 -262504376 + MIR SINE MIR 9 244 -18 184 352 56 16 chr1 19690156 19690281 -262503383 - L2 LINE L2 -219 3053 2924 506 328 74 4 chr1 19690289 19690518 -262503146 - MIR SINE MIR -2 260 16 312 27 0 0 chr1 19690672 19690709 -262502955 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 210 234 0 31 chr1 19690742 19690806 -262502858 + (CCCTAA)n Simple_repeat Simple_repeat 4 65 0 489 84 0 0 chr1 19691148 19691219 -262502445 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 621 311 40 63 chr1 19691967 19692572 -262501092 + L2 LINE L2 2420 3015 -257 409 250 100 17 chr1 19694772 19694892 -262498772 + MIR SINE MIR 17 146 -62 534 254 88 29 chr1 19694954 19695159 -262498505 + MIR SINE MIR 36 252 -10 331 340 102 7 chr1 19695511 19695658 -262498006 + MIR SINE MIR 28 188 -74 513 273 77 10 chr1 19696230 19696439 -262497225 + MIR SINE MIR 34 256 -6 2636 163 2 47 chr1 19696646 19697155 -262496509 - MER66B LTR ERV1 0 486 1 219 367 0 10 chr1 19697476 19697574 -262496090 + MIR SINE MIR 155 251 -11 1970 181 3 6 chr1 19697626 19697964 -262495700 + MER66B LTR ERV1 3 339 -147 597 256 89 25 chr1 19698096 19698299 -262495365 - LTR16C LTR ERVL 0 491 276 628 242 46 7 chr1 19698307 19698460 -262495204 - MER5A DNA MER1_type -8 181 23 477 192 31 54 chr1 19698465 19698595 -262495069 - LTR16C LTR ERVL -195 296 170 543 285 90 5 chr1 19698705 19698905 -262494759 + MIR SINE MIR 40 256 -6 223 319 21 21 chr1 19699973 19700067 -262493597 + MER5A DNA MER1_type 39 132 -57 325 275 0 0 chr1 19700635 19700715 -262492949 + MIR SINE MIR 183 262 0 235 290 48 0 chr1 19700761 19700823 -262492841 + MIR SINE MIR 85 149 -59 313 223 23 115 chr1 19701321 19701451 -262492213 + MER46C DNA MER2_type 1 118 -220 * 796 294 19 8 chr1 19701443 19701705 -262491959 + MER46C DNA MER2_type 73 337 -1 1068 249 19 4 chr1 19702410 19702667 -262490997 - MIR SINE MIR -1 261 1 668 275 70 39 chr1 19702808 19703066 -262490598 - MLT1H LTR MaLR -207 342 77 857 233 98 0 chr1 19704107 19704300 -262489364 + MER58A DNA MER1_type 13 224 0 593 231 0 15 chr1 19704300 19704430 -262489234 + L2 LINE L2 3186 3313 0 380 319 14 7 chr1 19704501 19704645 -262489019 - MIR3 SINE MIR -48 160 16 310 155 0 17 chr1 19706164 19706222 -262487442 + MIR SINE MIR 76 132 -76 441 348 17 11 chr1 19707473 19707651 -262486013 - L3 LINE CR1 -114 1463 1285 366 321 0 0 chr1 19707724 19707833 -262485831 - MER81 DNA DNA -5 109 1 214 231 15 46 chr1 19708020 19708085 -262485579 + MIR SINE MIR 36 98 -164 580 264 71 30 chr1 19708262 19708281 -262485383 + MIR SINE MIR 46 63 -199 2089 124 16 72 chr1 19708281 19708667 -262484997 - THE1B LTR MaLR 0 364 1 580 264 71 30 chr1 19708667 19708844 -262484820 + MIR SINE MIR 63 250 -12 2100 109 17 0 chr1 19709352 19709645 -262484019 - AluSx SINE Alu -4 308 11 918 103 0 0 chr1 19709646 19709782 -262483882 + (TTTCC)n Simple_repeat Simple_repeat 4 139 0 520 40 13 13 chr1 19709782 19709858 -262483806 + (TTTC)n Simple_repeat Simple_repeat 2 77 0 224 260 0 65 chr1 19710240 19710317 -262483347 + MIR SINE MIR 46 117 -91 215 320 27 27 chr1 19710436 19710511 -262483153 - L2 LINE L2 -48 3224 3150 1033 204 87 0 chr1 19710776 19710982 -262482682 + MER58A DNA MER1_type 1 224 0 2018 139 13 3 chr1 19711058 19711367 -262482297 + AluSx SINE Alu 1 312 0 523 277 15 0 chr1 19711369 19711506 -262482158 - MER45A DNA AcHobo -7 171 33 344 304 43 43 chr1 19712162 19712392 -262481272 + LTR33 LTR ERVL 292 521 0 965 272 104 39 chr1 19712504 19712938 -262480726 - MLT1H1 LTR MaLR -93 462 1 242 298 113 24 chr1 19713338 19713462 -262480202 + MIR3 SINE MIR 12 146 -62 214 271 168 9 chr1 19713487 19713594 -262480070 + MIR SINE MIR 23 146 -62 278 254 0 0 chr1 19713750 19713809 -262479855 + L2 LINE L2 3206 3264 -8 1517 258 31 39 chr1 19713840 19714348 -262479316 + L1ME2 LINE L1 5651 6154 -10 411 21 0 0 chr1 19714518 19714566 -262479098 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2020 99 0 4 chr1 19714568 19714840 -262478824 - AluSx SINE Alu -26 286 16 354 23 0 0 chr1 19714842 19714885 -262478779 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1783 158 0 7 chr1 19714885 19715170 -262478494 - AluJb SINE Alu -29 283 1 436 302 205 15 chr1 19715452 19715720 -262477944 + L2 LINE L2 2994 3312 -1 523 268 56 22 chr1 19715809 19715988 -262477676 - MIR3 SINE MIR -12 196 12 245 316 33 79 chr1 19716622 19716774 -262476890 + L2 LINE L2 2630 2774 -540 491 261 52 0 chr1 19716823 19716957 -262476707 - MIR SINE MIR -12 250 110 534 189 0 0 chr1 19717417 19717528 -262476136 + (TGAA)n Simple_repeat Simple_repeat 4 114 0 2040 108 3 23 chr1 19717593 19717899 -262475765 + AluSx SINE Alu 2 301 -11 324 294 100 6 chr1 19718229 19718399 -262475265 + MIR3 SINE MIR 2 187 -21 262 303 34 107 chr1 19718506 19718684 -262474980 + MER5A DNA MER1_type 16 180 -9 396 40 0 0 chr1 19718946 19718996 -262474668 + (CA)n Simple_repeat Simple_repeat 2 51 0 192 380 54 16 chr1 19720087 19720216 -262473448 + MIR SINE MIR 28 161 -101 * 241 292 80 36 chr1 19720206 19720343 -262473321 - L2 LINE L2 -1 3312 3170 200 294 0 0 chr1 19720384 19720435 -262473229 + L2 LINE L2 3220 3270 -43 268 276 40 0 chr1 19720627 19720703 -262472961 - L2 LINE L2 0 3313 3235 389 324 30 8 chr1 19720823 19721025 -262472639 - MIR SINE MIR -40 222 19 183 80 0 0 chr1 19721499 19721524 -262472140 + (T)n Simple_repeat Simple_repeat 1 25 0 184 298 21 0 chr1 19722160 19722207 -262471457 + MIR SINE MIR 215 262 0 390 255 93 69 chr1 19722225 19722429 -262471235 - MIR SINE MIR -26 236 28 219 225 42 14 chr1 19722540 19722611 -262471053 + MIR SINE MIR 82 154 -108 237 218 18 18 chr1 19722630 19722685 -262470979 - L2 LINE L2 -18 3254 3200 188 194 242 0 chr1 19723044 19723106 -262470558 + L2 LINE L2 3213 3289 -24 304 290 129 0 chr1 19723121 19723214 -262470450 - L2 LINE L2 0 3313 3209 2651 29 0 0 chr1 19723214 19723524 -262470140 + AluYa5 SINE Alu 1 310 -1 22 0 0 0 chr1 19723524 19723546 -262470118 + AT_rich Low_complexity Low_complexity 1 22 0 1268 91 6 11 chr1 19723546 19723744 -262469920 + AluY SINE Alu 118 311 0 339 234 131 19 chr1 19724365 19724472 -262469192 - MIR SINE MIR -70 192 74 309 325 0 0 chr1 19725780 19725857 -262467807 + MIR SINE MIR 69 145 -63 881 163 4 114 chr1 19725927 19726154 -262467510 - MER20 DNA MER1_type -2 217 16 432 296 127 31 chr1 19727663 19728093 -262465571 + L2 LINE L2 2608 3091 -181 334 326 81 17 chr1 19728538 19728710 -262464954 - MIR SINE MIR -79 183 1 211 368 9 0 chr1 19728962 19729068 -262464596 + L2 LINE L2 2915 3021 -251 375 296 35 0 chr1 19729462 19729577 -262464087 + L2 LINE L2 3153 3271 -1 296 304 24 48 chr1 19730242 19730367 -262463297 + MIR SINE MIR 18 139 -123 250 286 89 54 chr1 19730420 19730588 -262463076 + MIR SINE MIR 38 211 -51 190 153 0 119 chr1 19730722 19730781 -262462883 - MIR SINE MIR -74 188 137 339 267 0 0 chr1 19730847 19730933 -262462731 - MIR3 SINE MIR -42 166 81 195 184 53 0 chr1 19731501 19731539 -262462125 + MIR SINE MIR 78 117 -91 253 304 83 58 chr1 19731625 19731937 -262461727 - L2 LINE L2 0 3313 2994 583 272 42 26 chr1 19732013 19732204 -262461460 + LTR16C LTR ERVL 80 273 -218 262 264 28 0 chr1 19732232 19732304 -262461360 + L2 LINE L2 3234 3307 -6 364 235 144 0 chr1 19732436 19732568 -262461096 + LTR16C LTR ERVL 317 467 -24 665 289 67 18 chr1 19732585 19733024 -262460640 - MER39 LTR ERV1 -41 666 2 516 290 166 54 chr1 19733309 19733568 -262460096 + L2 LINE L2 2985 3272 0 641 323 36 66 chr1 19733684 19733889 -262459775 - L2 LINE L2 -2 3311 3101 1529 184 87 16 chr1 19733889 19734210 -262459454 + MER2 DNA MER2_type 1 344 0 641 323 36 66 chr1 19734210 19734475 -262459189 - L2 LINE L2 -212 3101 2855 272 194 14 56 chr1 19734628 19734700 -262458964 - MER39 LTR ERV1 -634 73 5 268 311 119 13 chr1 19735115 19735266 -262458398 + L2 LINE L2 3101 3267 -5 755 178 8 0 chr1 19736267 19736396 -262457268 + FLAM_C SINE Alu 10 139 -4 339 206 54 99 chr1 19736457 19736620 -262457044 - MER5A DNA MER1_type -16 170 7 234 298 0 36 chr1 19737246 19737330 -262456334 + L2 LINE L2 3189 3269 -3 236 330 17 8 chr1 19737443 19737561 -262456103 - MIR SINE MIR -118 144 26 2041 106 3 3 chr1 19737635 19737954 -262455710 - AluSx SINE Alu 0 319 1 181 318 239 0 chr1 19739420 19739508 -262454156 + L2 LINE L2 3161 3269 -3 252 268 0 0 chr1 19740011 19740067 -262453597 - L2 LINE L2 -64 3249 3194 192 200 200 0 chr1 19740146 19740211 -262453453 + MER5B DNA MER1_type 101 178 0 486 340 64 31 chr1 19740321 19740712 -262452952 - L2 LINE L2 -710 2604 2201 434 225 94 14 chr1 19740740 19740878 -262452786 - MIR3 SINE MIR -26 182 34 417 39 0 0 chr1 19741011 19741062 -262452602 + (CA)n Simple_repeat Simple_repeat 2 52 0 1101 60 21 20 chr1 19741496 19741937 -262451727 + (TGGA)n Simple_repeat Simple_repeat 1 441 0 314 348 18 0 chr1 19742157 19742269 -262451395 - MIR SINE MIR -62 146 33 664 301 99 32 chr1 19742331 19742914 -262450750 + L2 LINE L2 2652 3273 -40 300 310 23 39 chr1 19743007 19743136 -262450528 + MIR3 SINE MIR 37 163 -45 855 265 15 0 chr1 19743682 19743882 -262449782 - MIR SINE MIR -10 252 50 206 370 110 7 chr1 19744022 19744176 -262449488 + MIR SINE MIR 65 234 -28 206 261 0 0 chr1 19744664 19744710 -262448954 - L2 LINE L2 0 3272 3227 311 295 27 9 chr1 19744799 19744911 -262448753 - MIR SINE MIR -40 222 109 697 277 115 13 chr1 19745597 19745832 -262447832 - MIR SINE MIR 0 262 4 232 244 219 42 chr1 19746559 19746678 -262446986 - L1ME3 LINE L1 -83 6079 5940 958 264 96 38 chr1 19746700 19746963 -262446701 - L1ME3 LINE L1 -294 5868 5579 2317 176 28 26 chr1 19746963 19747429 -262446235 - MLT1C LTR MaLR 0 467 1 958 264 96 38 chr1 19747429 19747509 -262446155 - L1ME3 LINE L1 -583 5579 5505 650 264 131 48 chr1 19747878 19747898 -262445766 + L2 LINE L2 2974 2991 -322 2450 108 30 25 chr1 19747898 19748260 -262445404 - THE1B LTR MaLR 0 364 1 650 264 131 48 chr1 19748260 19748553 -262445111 + L2 LINE L2 2991 3313 0 2483 175 59 2 chr1 19748686 19749143 -262444521 - MLT1D LTR MaLR 0 505 23 280 346 53 15 chr1 19749188 19749321 -262444343 + L2 LINE L2 3118 3255 -17 813 214 71 20 chr1 19749670 19749866 -262443798 + MIR SINE MIR 33 238 -24 332 254 0 0 chr1 19749896 19749963 -262443701 - L2 LINE L2 -16 3256 3190 410 304 36 10 chr1 19750002 19750144 -262443520 - MIR SINE MIR -61 147 19 578 320 40 18 chr1 19750810 19751038 -262442626 - MIR SINE MIR -27 235 3 373 366 39 32 chr1 19751549 19751858 -262441806 + L2 LINE L2 3003 3313 0 713 171 33 8 chr1 19751862 19752234 -262441430 + (TGGA)n Simple_repeat Simple_repeat 1 381 0 704 179 20 119 chr1 19752993 19753194 -262440470 + MIR SINE MIR 82 262 0 209 320 40 0 chr1 19753192 19753267 -262440397 - L2 LINE L2 -6 3307 3230 * 314 307 199 6 chr1 19753339 19753505 -262440159 + MIR SINE MIR 65 262 0 609 317 20 5 chr1 19753580 19753782 -262439882 - MIR SINE MIR -55 207 3 885 232 68 5 chr1 19754097 19754325 -262439339 - MIR SINE MIR -22 240 6 309 109 0 0 chr1 19754766 19754812 -262438852 + (TG)n Simple_repeat Simple_repeat 2 47 0 345 322 0 78 chr1 19755021 19755201 -262438463 + Charlie8 DNA MER1_type 7 172 -2245 1551 236 52 33 chr1 19755322 19755780 -262437884 - MLT1J LTR MaLR -2 509 43 835 221 20 74 chr1 19756053 19756351 -262437313 + L2 LINE L2 3032 3313 0 448 277 26 39 chr1 19757040 19757195 -262436469 + MIR SINE MIR 47 199 -63 218 306 47 0 chr1 19757635 19757720 -262435944 + MIR SINE MIR 29 117 -145 551 216 34 83 chr1 19757737 19757766 -262435898 + MIR SINE MIR 1 30 -232 1336 202 94 57 chr1 19757766 19758118 -262435546 - MLT1A1 LTR MaLR 0 365 1 551 216 34 83 chr1 19758118 19758292 -262435372 + MIR SINE MIR 30 194 -68 253 237 184 44 chr1 19758290 19758404 -262435260 - MIR SINE MIR -122 140 11 * 227 250 0 0 chr1 19758449 19758497 -262435167 + L2 LINE L2 3205 3252 -20 188 220 80 0 chr1 19759635 19759685 -262433979 - MIR SINE MIR -73 135 82 209 250 167 10 chr1 19760832 19760928 -262432736 + MIR3 SINE MIR 54 164 -44 268 216 0 0 chr1 19763638 19763689 -262429975 + L1ME1 LINE L1 5558 5608 -2177 1191 273 63 8 chr1 19763771 19764205 -262429459 + L1ME1 LINE L1 5702 6161 -5 2001 172 3 6 chr1 19764453 19764819 -262428845 - MER47A DNA MER2_type -1 365 1 277 295 39 0 chr1 19764825 19764903 -262428761 + L2 LINE L2 3221 3301 -12 195 323 0 15 chr1 19764947 19765012 -262428652 - MIR SINE MIR -21 241 178 434 306 8 8 chr1 19765660 19765781 -262427883 - MIR SINE MIR -72 136 16 184 178 0 0 chr1 19765950 19765995 -262427669 - L2 LINE L2 -208 3064 3020 458 200 61 0 chr1 19766645 19766760 -262426904 + L1MD3 LINE L1 7869 7990 -5 318 389 0 0 chr1 19766813 19766980 -262426684 + G-rich Low_complexity Low_complexity 2 168 0 1189 203 8 8 chr1 19767077 19767328 -262426336 - L1MC1 LINE L1 0 6333 6083 3320 86 12 4 chr1 19767432 19767918 -262425746 - L1PB1 LINE L1 0 6151 5662 318 352 98 27 chr1 19767933 19768268 -262425396 - L2 LINE L2 -559 2755 2397 295 368 68 18 chr1 19769826 19769989 -262423675 - MIR SINE MIR -72 190 20 1302 256 35 0 chr1 19770107 19770423 -262423241 + MER58B DNA MER1_type 1 327 -14 209 194 6 3 chr1 19770739 19770780 -262422884 + MIR SINE MIR 113 155 -53 335 290 49 15 chr1 19771807 19771940 -262421724 + MIR3 SINE MIR 57 193 -15 611 240 20 7 chr1 19772653 19772799 -262420865 - MIR SINE MIR -37 225 78 275 164 36 82 chr1 19773005 19773056 -262420608 + MIR3 SINE MIR 89 141 -67 2304 138 28 3 chr1 19773056 19773411 -262420253 - THE1B LTR MaLR 0 364 1 275 164 36 82 chr1 19773411 19773469 -262420195 + MIR3 SINE MIR 141 193 -15 226 286 14 29 chr1 19773479 19773549 -262420115 - MIR SINE MIR -117 145 77 399 294 25 0 chr1 19773564 19773683 -262419981 + MIR SINE MIR 92 213 -49 344 351 0 0 chr1 19774112 19774223 -262419441 - MIR SINE MIR -71 191 81 341 279 35 35 chr1 19775437 19775609 -262418055 - MIR SINE MIR -72 190 19 1768 169 33 3 chr1 19775766 19776067 -262417597 + AluJb SINE Alu 3 312 0 192 204 0 41 chr1 19776245 19776294 -262417370 + MIR SINE MIR 21 67 -141 397 243 156 98 chr1 19776444 19776720 -262416944 - L2 LINE L2 -1 3312 3021 380 208 58 50 chr1 19776743 19776863 -262416801 - L2 LINE L2 0 3313 3193 1045 213 35 42 chr1 19776897 19777184 -262416480 - MLT1C LTR MaLR -3 464 180 998 146 20 4 chr1 19777199 19777454 -262416210 + CT-rich Low_complexity Low_complexity 1 259 0 506 192 77 0 chr1 19777465 19777569 -262416095 - FLAM_C SINE Alu -27 116 5 791 194 39 6 chr1 19777576 19777756 -262415908 - MLT1C LTR MaLR -281 186 1 600 257 77 6 chr1 19777836 19778019 -262415645 - MIR SINE MIR -9 253 58 238 65 22 22 chr1 19778366 19778412 -262415252 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2108 129 7 0 chr1 19778414 19778708 -262414956 - AluSx SINE Alu -16 296 1 4607 201 7 16 chr1 19778726 19780132 -262413532 - L1MB8 LINE L1 -7 6171 4779 1302 139 0 5 chr1 19780513 19780700 -262412964 - AluJo SINE Alu -42 270 85 2092 149 3 0 chr1 19781690 19781998 -262411666 - AluSx SINE Alu -3 309 1 641 260 160 14 chr1 19781998 19782217 -262411447 - MIR SINE MIR -4 258 8 257 286 155 43 chr1 19782214 19782375 -262411289 + MIR SINE MIR 64 242 -20 * 347 320 124 5 chr1 19782547 19782741 -262410923 + MIR SINE MIR 14 230 -32 307 196 49 12 chr1 19783624 19783719 -262409945 - MIR SINE MIR -85 123 25 204 100 0 0 chr1 19783855 19783885 -262409779 - MIR SINE MIR -114 148 119 849 267 27 4 chr1 19784309 19784534 -262409130 - MIR SINE MIR -2 260 31 685 321 8 12 chr1 19785322 19785565 -262408099 - MIR SINE MIR 0 262 21 347 303 123 0 chr1 19785967 19786089 -262407575 - MIR SINE MIR -4 258 122 758 147 0 16 chr1 19786090 19786219 -262407445 + FLAM_C SINE Alu 2 128 -5 271 280 47 9 chr1 19786244 19786351 -262407313 - MIR SINE MIR -127 135 25 316 342 40 13 chr1 19787345 19787497 -262406167 - MIR3 SINE MIR -33 175 20 710 220 43 38 chr1 19788649 19788835 -262404829 - MER5A DNA MER1_type 0 189 3 399 303 122 64 chr1 19789705 19790192 -262403472 - L2 LINE L2 0 3313 2799 467 294 129 51 chr1 19790254 19790625 -262403039 - L2 LINE L2 -12 3260 2861 197 259 24 12 chr1 19790615 19790700 -262402964 - L2 LINE L2 -260 3053 2968 * 372 292 22 87 chr1 19791247 19791432 -262402232 - MIR SINE MIR -56 206 34 2168 131 3 0 chr1 19792144 19792449 -262401215 - AluSp SINE Alu -7 306 1 390 393 12 0 chr1 19793017 19793190 -262400474 + G-rich Low_complexity Low_complexity 5 179 0 297 388 10 0 chr1 19793204 19793355 -262400309 + G-rich Low_complexity Low_complexity 1 152 0 * 316 416 17 0 chr1 19793283 19793456 -262400208 + (CAGAGA)n Simple_repeat Simple_repeat 5 180 0 243 286 0 0 chr1 19793467 19793572 -262400092 + G-rich Low_complexity Low_complexity 1 105 0 337 356 10 0 chr1 19793583 19793684 -262399980 + G-rich Low_complexity Low_complexity 3 104 0 333 267 0 0 chr1 19793695 19793811 -262399853 + G-rich Low_complexity Low_complexity 3 118 0 310 371 29 0 chr1 19794413 19794553 -262399111 + MIR3 SINE MIR 12 155 -53 1135 186 114 10 chr1 19794553 19794843 -262398821 - MER33 DNA MER1_type 0 324 5 740 236 99 14 chr1 19794982 19795194 -262398470 - MIR SINE MIR -30 232 3 1877 159 0 43 chr1 19795296 19795622 -262398042 + AluJo SINE Alu 1 312 0 186 133 0 0 chr1 19795622 19795652 -262398012 + (GA)n Simple_repeat Simple_repeat 1 30 0 1148 103 0 6 chr1 19795654 19795829 -262397835 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 718 246 50 20 chr1 19796223 19796422 -262397242 + MIR SINE MIR 21 225 -37 364 258 91 45 chr1 19796732 19796864 -262396800 + L2 LINE L2 3127 3264 -8 483 320 36 10 chr1 19797083 19797277 -262396387 - MIR SINE MIR -44 218 20 333 228 13 13 chr1 19797503 19797582 -262396082 + L2 LINE L2 2695 2773 -541 233 216 0 91 chr1 19797724 19797812 -262395852 + MER63 DNA MER1_type 979 1058 -2 370 183 0 0 chr1 19797909 19797969 -262395695 + AluSc SINE Alu 125 184 -115 261 248 0 89 chr1 19798148 19798249 -262395415 + L2 LINE L2 3141 3232 -81 227 281 67 11 chr1 19798864 19798953 -262394711 - MIR SINE MIR -71 137 44 238 226 0 32 chr1 19799010 19799072 -262394592 + GA-rich Low_complexity Low_complexity 1 60 0 265 246 46 0 chr1 19801221 19801286 -262392378 - MIR SINE MIR -85 177 110 313 327 103 10 chr1 19803594 19803814 -262389850 - MIR SINE MIR -13 249 2 2113 110 20 7 chr1 19803917 19804216 -262389448 - AluSx SINE Alu -8 304 2 529 202 330 0 chr1 19804260 19804448 -262389216 - MIR SINE MIR 0 262 13 2214 125 0 23 chr1 19804537 19804841 -262388823 + AluSg SINE Alu 1 297 -13 232 222 103 43 chr1 19805480 19805596 -262388068 + MIR SINE MIR 37 154 -59 * 362 262 172 60 chr1 19805589 19805822 -262387842 - MIR SINE MIR 0 262 4 215 163 23 0 chr1 19806092 19806135 -262387529 + L2 LINE L2 3016 3059 -213 962 253 72 15 chr1 19806234 19806566 -262387098 + L2 LINE L2 2400 2750 -564 * 2460 227 65 28 chr1 19806564 19807603 -262386061 + L1ME2 LINE L1 4786 5879 -285 2181 141 0 0 chr1 19807603 19807900 -262385764 + AluSx SINE Alu 1 297 -15 2460 227 65 28 chr1 19807900 19808042 -262385622 + L1ME2 LINE L1 5879 6014 -150 309 284 74 7 chr1 19808042 19808190 -262385474 + L2 LINE L2 3015 3172 -141 455 266 31 0 chr1 19808283 19808411 -262385253 - L1ME2 LINE L1 -2 6162 6031 196 281 114 26 chr1 19808411 19808525 -262385139 + L2 LINE L2 3190 3313 0 233 318 57 0 chr1 19808542 19808630 -262385034 + MIR SINE MIR 170 262 0 190 315 34 56 chr1 19808625 19808714 -262384950 + L2 LINE L2 3226 3312 -1 * 1053 207 0 12 chr1 19808718 19809226 -262384438 + (TGGA)n Simple_repeat Simple_repeat 4 327 0 420 287 78 0 chr1 19809456 19809585 -262384079 - MIR3 SINE MIR -51 157 19 286 378 86 5 chr1 19810026 19810235 -262383429 + MIR SINE MIR 31 256 -6 259 301 206 0 chr1 19810548 19810684 -262382980 + MIR SINE MIR 97 260 -2 468 226 188 31 chr1 19811291 19811578 -262382086 + L2 LINE L2 2922 3253 -60 201 74 0 0 chr1 19811611 19811638 -262382026 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 336 301 128 13 chr1 19811646 19811802 -262381862 + MIR3 SINE MIR 20 193 -15 390 244 65 24 chr1 19812010 19812133 -262381531 + MIR SINE MIR 19 146 -62 479 291 42 26 chr1 19812278 19812467 -262381197 + L2 LINE L2 3078 3269 -3 186 43 0 0 chr1 19812473 19812496 -262381168 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 323 303 76 8 chr1 19813504 19813636 -262380028 + MIR SINE MIR 88 228 -34 199 236 0 111 chr1 19814408 19814480 -262379184 - MIR SINE MIR -171 91 28 382 234 6 77 chr1 19815048 19815214 -262378450 - MLT1H LTR MaLR -13 536 404 245 306 122 51 chr1 19815235 19815431 -262378233 - MLT1I LTR MaLR -114 295 86 634 261 67 62 chr1 19815623 19815691 -262377973 - MLT1J2 LTR MaLR -5 404 338 2400 142 26 21 chr1 19815691 19816113 -262377551 + MSTA LTR MaLR 1 424 -4 634 261 67 62 chr1 19816113 19816252 -262377412 - MLT1J2 LTR MaLR -71 338 201 2367 149 66 23 chr1 19816252 19816734 -262376930 + MLT1D LTR MaLR 1 503 -2 634 261 67 62 chr1 19816734 19816889 -262376775 - MLT1J2 LTR MaLR -208 201 33 1415 292 97 17 chr1 19817334 19818321 -262375343 + L2 LINE L2 2228 3292 -21 206 62 31 0 chr1 19818329 19818361 -262375303 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 258 319 121 17 chr1 19818370 19818486 -262375178 - L2 LINE L2 -24 3248 3121 366 310 48 86 chr1 19819246 19819536 -262374128 - L2 LINE L2 0 3272 2994 383 283 9 9 chr1 19820876 19821027 -262372637 + G-rich Low_complexity Low_complexity 1 151 0 216 318 9 9 chr1 19821174 19821281 -262372383 + GA-rich Low_complexity Low_complexity 1 107 0 * 473 126 43 44 chr1 19821208 19821616 -262372048 + (CAGAGA)n Simple_repeat Simple_repeat 1 407 0 278 240 16 32 chr1 19821617 19821742 -262371922 + GA-rich Low_complexity Low_complexity 2 124 0 599 266 82 20 chr1 19822318 19822562 -262371102 + MIR SINE MIR 3 261 -1 458 258 159 0 chr1 19822660 19822811 -262370853 + MER5A DNA MER1_type 9 183 -6 2306 113 7 0 chr1 19823225 19823535 -262370129 + AluSx SINE Alu 1 312 0 243 309 43 11 chr1 19823758 19823852 -262369812 - MIR SINE MIR -60 148 52 722 275 107 0 chr1 19823932 19824165 -262369499 - LTR16C LTR ERVL -1 490 233 1756 166 65 3 chr1 19824433 19824741 -262368923 + MLT1A1 LTR MaLR 31 357 -8 369 282 57 8 chr1 19825038 19825162 -262368502 + MIR SINE MIR 19 148 -114 764 296 15 0 chr1 19825216 19825415 -262368249 - MIR SINE MIR -9 253 52 216 229 0 0 chr1 19825457 19825505 -262368159 + L2 LINE L2 3213 3260 -12 778 247 31 51 chr1 19825604 19825859 -262367805 + MIR SINE MIR 13 262 0 258 320 80 27 chr1 19826047 19826197 -262367467 - MIR SINE MIR -55 207 50 205 269 15 112 chr1 19826537 19826671 -262366993 - MIR SINE MIR -65 143 23 420 297 103 0 chr1 19827795 19827970 -262365694 - MIR SINE MIR 0 262 70 1882 184 17 0 chr1 19827975 19828333 -262365331 - MLT1B LTR MaLR -3 387 24 222 294 12 0 chr1 19828346 19828431 -262365233 + L2 LINE L2 2177 2262 -1052 255 167 0 0 chr1 19828583 19828625 -262365039 - MLT1C LTR MaLR -386 81 40 644 184 0 32 chr1 19828631 19828756 -262364908 + FLAM_C SINE Alu 7 127 -16 4455 22 9 0 chr1 19828756 19829293 -262364371 - L1PA3 LINE L1 -1 6154 5613 287 150 0 19 chr1 19829293 19829346 -262364318 + FLAM SINE Alu 79 118 -15 465 311 173 11 chr1 19829531 19829814 -262363850 + L1ME3A LINE L1 5809 6137 -33 * 470 223 134 0 chr1 19829813 19829970 -262363694 + L1MD3 LINE L1 7818 7995 0 23 33 0 0 chr1 19830052 19830082 -262363582 + AT_rich Low_complexity Low_complexity 1 30 0 291 106 0 0 chr1 19830086 19830133 -262363531 + L1ME3A LINE L1 6124 6170 0 393 312 79 42 chr1 19830202 19830417 -262363247 - MIR SINE MIR -20 242 20 397 238 0 0 chr1 19831209 19831293 -262362371 + MER103 DNA DNA 38 121 -45 311 250 37 19 chr1 19831436 19831549 -262362115 - MIR SINE MIR -65 143 51 2652 114 46 2 chr1 19831571 19831983 -262361681 + MSTB1 LTR MaLR 1 430 -2 253 301 27 62 chr1 19832161 19832307 -262361357 - MIR SINE MIR -65 197 57 2932 177 26 0 chr1 19832845 19833392 -262360272 + MER68 LTR ERV1 2 562 0 1695 185 84 15 chr1 19833434 19833769 -262359895 + MLT1A1 LTR MaLR 8 365 0 330 300 17 17 chr1 19833769 19833889 -262359775 - MER5A DNA MER1_type -69 120 1 623 283 64 34 chr1 19834590 19834855 -262358809 - L2 LINE L2 0 3313 3041 280 313 75 0 chr1 19835812 19835946 -262357718 - MIR3 SINE MIR -57 151 8 244 262 173 47 chr1 19836020 19836211 -262357453 + MIR SINE MIR 47 261 -1 180 0 0 0 chr1 19836346 19836366 -262357298 + (A)n Simple_repeat Simple_repeat 1 20 0 328 355 7 26 chr1 19836575 19836619 -262357045 - MER5A DNA MER1_type -15 174 131 1749 157 9 53 chr1 19836619 19836937 -262356727 + AluJo SINE Alu 1 304 -8 328 355 7 26 chr1 19836937 19837044 -262356620 - MER5A DNA MER1_type -58 131 26 460 336 51 25 chr1 19837266 19837501 -262356163 + MIR SINE MIR 20 260 -2 186 118 0 0 chr1 19837697 19837731 -262355933 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1912 182 3 0 chr1 19837881 19838177 -262355487 - AluJb SINE Alu -15 297 1 816 275 90 24 chr1 19838203 19838537 -262355127 - MLT1H LTR MaLR -162 387 32 265 302 28 38 chr1 19838646 19838752 -262354912 - L2 LINE L2 0 3313 3209 237 233 0 0 chr1 19838780 19838840 -262354824 + MIR SINE MIR 60 119 -89 21 36 0 0 chr1 19839236 19839264 -262354400 + AT_rich Low_complexity Low_complexity 1 28 0 205 369 114 13 chr1 19839520 19839669 -262353995 - MIR SINE MIR -79 183 20 236 197 0 15 chr1 19839751 19839817 -262353847 + GA-rich Low_complexity Low_complexity 3 67 0 418 302 131 34 chr1 19840040 19840490 -262353174 + L2 LINE L2 2499 3038 -234 185 259 353 0 chr1 19840489 19840574 -262353090 - L2 LINE L2 0 3313 3199 * 372 299 103 0 chr1 19840750 19840867 -262352797 + LTR16C LTR ERVL 94 222 -269 615 297 75 30 chr1 19840869 19841314 -262352350 - MLT1H LTR MaLR 0 549 39 909 252 35 8 chr1 19841335 19841593 -262352071 + LTR16C LTR ERVL 220 484 -7 449 196 11 0 chr1 19842446 19842538 -262351126 - MIR SINE MIR 0 262 170 886 113 0 0 chr1 19842538 19842653 -262351011 + AluSp SINE Alu 1 115 -198 278 98 0 0 chr1 19842654 19842695 -262350969 + AluSp/q SINE Alu 252 292 -11 235 60 200 0 chr1 19842697 19842747 -262350917 - MIR SINE MIR -82 180 121 219 130 0 87 chr1 19842799 19842845 -262350819 - L2 LINE L2 -4 3268 3227 249 360 0 12 chr1 19842850 19842936 -262350728 - MIR SINE MIR -174 88 4 338 369 58 36 chr1 19843035 19843344 -262350320 - L2 LINE L2 -86 3186 2871 355 247 0 0 chr1 19843574 19843651 -262350013 - MER103 DNA DNA -87 79 3 496 255 107 29 chr1 19843818 19844061 -262349603 - MIR SINE MIR 0 262 1 1862 175 13 7 chr1 19844624 19844927 -262348737 - AluJb SINE Alu -7 305 1 305 296 88 49 chr1 19845780 19846006 -262347658 + MIR SINE MIR 28 262 0 448 246 77 8 chr1 19846398 19846528 -262347136 - MIR SINE MIR -111 151 13 310 319 191 9 chr1 19847392 19847602 -262346062 - MIR SINE MIR 0 262 15 327 250 24 0 chr1 19847606 19847690 -262345974 + MIR SINE MIR 60 145 -63 1331 195 29 20 chr1 19848160 19848455 -262345209 + LTR10B LTR ERV1 221 547 0 191 337 69 0 chr1 19848456 19848557 -262345107 - MIR SINE MIR -108 154 47 325 276 26 43 chr1 19848642 19848758 -262344906 - MER81 DNA DNA 0 114 1 571 241 15 8 chr1 19849510 19849643 -262344021 + MIR3 SINE MIR 14 147 -61 213 128 26 0 chr1 19849901 19849940 -262343724 + C-rich Low_complexity Low_complexity 1 40 0 532 289 134 47 chr1 19850386 19850850 -262342814 + L2 LINE L2 2159 2662 -652 293 250 104 0 chr1 19851190 19851286 -262342378 + LTR16C LTR ERVL 386 491 0 257 308 60 0 chr1 19851287 19851420 -262342244 + L2 LINE L2 2640 2780 -534 259 256 22 56 chr1 19851432 19851522 -262342142 + LTR29 LTR ERV1 1 87 -535 248 220 37 83 chr1 19851496 19851605 -262342059 + MER39 LTR ERV1 249 352 -355 * 1200 215 4 9 chr1 19851607 19851835 -262341829 + AluJo SINE Alu 1 227 -85 3982 123 13 19 chr1 19851835 19852463 -262341201 + MER41B LTR ERV1 3 626 -9 395 134 0 0 chr1 19852470 19852537 -262341127 + AluJo SINE Alu 235 301 -1 * 655 219 144 88 chr1 19852533 19852642 -262341022 + MER39 LTR ERV1 340 441 -266 2183 108 0 0 chr1 19852642 19852954 -262340710 + AluSc SINE Alu 3 314 0 655 219 144 88 chr1 19852954 19853163 -262340501 + MER39 LTR ERV1 441 677 -30 390 86 0 0 chr1 19853163 19853221 -262340443 - MER4B LTR ERV1 0 610 553 415 145 29 0 chr1 19853221 19853313 -262340351 + AluSp/q SINE Alu 217 310 0 2339 112 14 6 chr1 19853314 19853663 -262340001 - MER4B LTR ERV1 -258 352 1 2568 181 45 38 chr1 19853752 19854327 -262339337 - MER34C LTR ERV1 -6 579 1 253 294 92 16 chr1 19854327 19854511 -262339153 + L2 LINE L2 2886 3083 -189 180 152 0 0 chr1 19854693 19854726 -262338938 + GA-rich Low_complexity Low_complexity 2 34 0 3594 151 62 30 chr1 19854726 19855050 -262338614 - LTR8A LTR ERV1 0 727 415 2207 140 3 0 chr1 19855050 19855358 -262338306 + AluSx SINE Alu 1 309 -3 3594 151 62 30 chr1 19855358 19855727 -262337937 - LTR8A LTR ERV1 -312 415 12 278 282 24 12 chr1 19856163 19856248 -262337416 - MIR SINE MIR -116 146 61 3112 172 121 26 chr1 19856305 19856969 -262336695 - LTR8A LTR ERV1 0 727 1 274 135 0 0 chr1 19857021 19857058 -262336606 + LTR29 LTR ERV1 1 37 -585 883 171 0 0 chr1 19857059 19857234 -262336430 - AluSg/x SINE Alu 0 308 134 2011 108 27 7 chr1 19857234 19857529 -262336135 - AluSx SINE Alu -11 301 1 2140 219 95 9 chr1 19857530 19858088 -262335576 + LTR48B LTR ERV1 22 627 -17 3066 146 34 54 chr1 19858093 19858497 -262335167 + LTR48B-int LTR ERV1 1 412 -5534 2800 135 61 122 chr1 19858497 19859172 -262334492 + MER41B LTR ERV1 2 635 0 3066 146 34 54 chr1 19859172 19859739 -262333925 + LTR48B-int LTR ERV1 412 1481 -4465 3579 120 19 53 chr1 19859740 19859825 -262333839 + MER4B LTR ERV1 1 87 -523 2087 129 0 0 chr1 19859825 19860127 -262333537 + AluSx SINE Alu 1 302 -10 3579 120 19 53 chr1 19860127 19860664 -262333000 + MER4B LTR ERV1 87 602 -8 726 68 0 0 chr1 19860707 19860795 -262332869 + LTR48B-int LTR ERV1 842 929 -5402 546 118 0 11 chr1 19860794 19860887 -262332777 + LTR48B-int LTR ERV1 1299 1390 -4941 * 16828 168 86 84 chr1 19861002 19862283 -262331381 + LTR48B-int LTR ERV1 1372 2650 -3681 1650 183 0 10 chr1 19862283 19862573 -262331091 + AluJb SINE Alu 6 292 -20 16828 168 86 84 chr1 19862573 19862714 -262330950 + LTR48B-int LTR ERV1 2650 2789 -3542 185 220 34 51 chr1 19862714 19862773 -262330891 + L3 LINE CR1 1244 1301 -276 16828 168 86 84 chr1 19862773 19863861 -262329803 + LTR48B-int LTR ERV1 2789 3874 -2457 1563 194 3 3 chr1 19863861 19864149 -262329515 - AluJo SINE Alu -24 288 1 16828 168 86 84 chr1 19864149 19864688 -262328976 + LTR48B-int LTR ERV1 3874 4411 -1920 946 48 96 0 chr1 19864688 19864813 -262328851 + MER85 DNA T2_type 1 137 -2 16828 168 86 84 chr1 19864813 19866336 -262327328 + LTR48B-int LTR ERV1 4411 6012 -319 2128 231 89 8 chr1 19866501 19867097 -262326567 + LTR48B LTR ERV1 1 644 0 319 214 0 14 chr1 19867206 19867276 -262326388 - L1MB7 LINE L1 -9 6175 6107 1967 135 0 3 chr1 19867287 19867584 -262326080 - AluSg SINE Alu -6 304 9 1333 132 0 64 chr1 19867593 19867853 -262325811 - AluJb SINE Alu 0 309 65 716 271 47 20 chr1 19868102 19868357 -262325307 - MIR SINE MIR 0 262 1 351 230 86 115 chr1 19868604 19868778 -262324886 - MIR SINE MIR -81 181 13 216 200 0 0 chr1 19869473 19869513 -262324151 - MER5A DNA MER1_type -103 86 47 2572 80 20 6 chr1 19869563 19869913 -262323751 + THE1A LTR MaLR 1 355 0 1992 126 7 10 chr1 19869936 19870237 -262323427 + AluSx SINE Alu 1 300 -12 503 262 9 0 chr1 19870945 19871052 -262322612 - MIR SINE MIR 0 262 155 844 188 6 24 chr1 19871081 19871246 -262322418 + AluJb SINE Alu 138 299 -13 1229 247 48 24 chr1 19871246 19871538 -262322126 + MLT1G LTR MaLR 18 316 -274 748 241 6 6 chr1 19871537 19871699 -262321965 + MLT1G LTR MaLR 429 590 0 * 207 250 0 0 chr1 19871699 19871743 -262321921 - MIR SINE MIR -104 158 115 2021 126 10 0 chr1 19872343 19872637 -262321027 + AluSx SINE Alu 1 297 -15 215 217 116 78 chr1 19872715 19872844 -262320820 + L2 LINE L2 2301 2434 -880 1545 189 3 20 chr1 19873641 19873973 -262319691 - AluJo SINE Alu 0 312 3 264 296 61 8 chr1 19873990 19874122 -262319542 - MIR SINE MIR -5 257 119 2274 93 0 0 chr1 19874277 19874579 -262319085 - AluSg SINE Alu -6 304 3 377 311 34 34 chr1 19874583 19874731 -262318933 + MIR SINE MIR 13 160 -102 232 326 61 34 chr1 19874862 19875009 -262318655 + L1MC4a LINE L1 5447 5595 -526 223 347 0 0 chr1 19875062 19875134 -262318530 + L2 LINE L2 3226 3297 -16 234 0 0 0 chr1 19875136 19875162 -262318502 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 335 343 107 21 chr1 19875169 19875458 -262318206 + L1MC4a LINE L1 5615 5928 -1880 207 188 0 0 chr1 19875458 19875506 -262318158 + (TG)n Simple_repeat Simple_repeat 2 49 0 796 274 34 0 chr1 19876273 19876477 -262317187 - MIR SINE MIR -50 212 2 721 142 122 40 chr1 19876761 19876909 -262316755 + MER74B LTR ERVL 56 215 -407 193 171 98 0 chr1 19876945 19876986 -262316678 + MIR SINE MIR 212 256 -6 1850 190 52 24 chr1 19877060 19877429 -262316235 + MER74A LTR ERVL 171 549 -9 518 221 10 0 chr1 19877612 19877716 -262315948 + MIR SINE MIR 49 153 -109 208 346 37 37 chr1 19877759 19877840 -262315824 - MIR SINE MIR -75 187 107 430 276 151 0 chr1 19877924 19878076 -262315588 - MER96 DNA MER1_type? 0 175 1 396 0 0 0 chr1 19878228 19878272 -262315392 + (TG)n Simple_repeat Simple_repeat 2 45 0 1478 166 0 68 chr1 19878831 19879139 -262314525 + AluJb SINE Alu 1 287 -25 763 298 48 65 chr1 19879260 19879510 -262314154 + L2 LINE L2 2375 2628 -686 3345 178 2 2 chr1 19879510 19880067 -262313597 - MER41D LTR ERV1 0 557 1 763 298 48 65 chr1 19880067 19880181 -262313483 + L2 LINE L2 2628 2742 -572 1817 166 3 0 chr1 19880181 19880483 -262313181 + AluSx SINE Alu 1 303 -9 763 298 48 65 chr1 19880483 19880613 -262313051 + L2 LINE L2 2742 2862 -452 200 317 138 41 chr1 19880752 19880875 -262312789 + L2 LINE L2 3138 3272 0 292 274 114 36 chr1 19880918 19881137 -262312527 - MLT1K LTR MaLR -18 570 335 335 308 15 53 chr1 19881460 19881520 -262312144 - MIR SINE MIR -109 153 92 2211 116 99 42 chr1 19881520 19881925 -262311739 + MSTA LTR MaLR 1 428 0 335 308 15 53 chr1 19881925 19881997 -262311667 - MIR SINE MIR -170 92 26 514 265 129 6 chr1 19882547 19882717 -262310947 + MIR SINE MIR 71 261 -1 468 302 65 52 chr1 19882733 19882965 -262310699 + L2 LINE L2 3000 3234 -38 213 39 0 0 chr1 19883624 19883650 -262310014 + (TG)n Simple_repeat Simple_repeat 1 26 0 683 224 6 0 chr1 19883948 19884122 -262309542 + (CA)n Simple_repeat Simple_repeat 2 176 0 361 322 106 28 chr1 19884585 19884765 -262308899 - MIR SINE MIR -19 243 50 231 246 15 15 chr1 19885074 19885139 -262308525 - L2 LINE L2 -1 3312 3248 321 258 73 73 chr1 19885597 19885721 -262307943 + MIR SINE MIR 22 145 -63 387 312 8 48 chr1 19885776 19885901 -262307763 - L2 LINE L2 0 3313 3194 376 208 0 14 chr1 19885915 19885987 -262307677 - MER117 DNA MER1_type -89 108 38 796 142 55 119 chr1 19886045 19886220 -262307444 - MLT2C1 LTR ERVL -10 387 227 2090 131 3 0 chr1 19886220 19886526 -262307138 - AluSx SINE Alu -5 307 1 796 142 55 119 chr1 19886526 19886569 -262307095 - MLT2C1 LTR ERVL -170 227 183 318 241 111 9 chr1 19886566 19886674 -262306990 - MLT1J2 LTR MaLR -38 412 294 * 1090 115 21 57 chr1 19886762 19886954 -262306710 - MLT2C2 LTR ERVL -279 185 1 7015 57 10 14 chr1 19887248 19888546 -262305118 + L1PA8 LINE L1 4863 6156 -16 756 281 70 62 chr1 19888773 19889161 -262304503 - MLT1I LTR MaLR 0 409 19 230 0 33 0 chr1 19889473 19889503 -262304161 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 292 284 90 47 chr1 19889885 19890100 -262303564 + MIR SINE MIR 4 227 -35 385 317 37 12 chr1 19890720 19890884 -262302780 + MIR SINE MIR 4 171 -91 216 259 17 17 chr1 19891304 19891362 -262302302 + L3 LINE CR1 1517 1574 -3 408 325 72 46 chr1 19891485 19891722 -262301942 + L2 LINE L2 3030 3272 0 590 261 128 15 chr1 19891787 19891990 -262301674 - MIR SINE MIR -6 256 31 1774 150 10 19 chr1 19891997 19892310 -262301354 - AluJo SINE Alu -2 310 1 1174 193 30 47 chr1 19892432 19892837 -262300827 - L1MB7 LINE L1 -9 6175 5764 2215 100 6 3 chr1 19892837 19893148 -262300516 - AluSp SINE Alu -1 312 1 1174 193 30 47 chr1 19893148 19893493 -262300171 - L1MB7 LINE L1 -420 5764 5333 1770 164 3 0 chr1 19893493 19893786 -262299878 - AluJb SINE Alu -18 294 1 1174 193 30 47 chr1 19893786 19893834 -262299830 - L1MB7 LINE L1 -851 5333 5286 233 311 131 16 chr1 19894038 19894160 -262299504 + MIR SINE MIR 108 243 -19 1014 244 45 70 chr1 19894163 19894428 -262299236 - L2 LINE L2 -1 3312 3061 1214 220 128 43 chr1 19894428 19894897 -262298767 - MLT1J LTR MaLR 0 511 3 1014 244 45 70 chr1 19894897 19895074 -262298590 - L2 LINE L2 -252 3061 2881 491 269 88 96 chr1 19895654 19895914 -262297750 + MIR SINE MIR 4 261 -1 302 260 127 13 chr1 19896021 19896190 -262297474 + L2 LINE L2 2798 2977 -336 857 321 53 25 chr1 19896390 19896745 -262296919 + LTR16A LTR ERVL 28 392 -58 277 293 0 66 chr1 19896772 19896878 -262296786 - MIR SINE MIR -133 129 31 300 225 100 12 chr1 19896989 19897069 -262296595 + L2 LINE L2 3134 3220 -52 342 0 0 0 chr1 19897088 19897126 -262296538 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 193 345 115 11 chr1 19897126 19897213 -262296451 + L2 LINE L2 3137 3232 -40 310 343 95 36 chr1 19897316 19897675 -262295989 + L2 LINE L2 2893 3272 0 381 264 171 0 chr1 19897702 19897831 -262295833 - MIR SINE MIR -18 244 94 7084 57 1 2 chr1 19898506 19899474 -262294190 + L1PA6 LINE L1 5201 6167 0 1419 236 53 61 chr1 19899707 19900215 -262293449 - MLT1D LTR MaLR -1 504 1 500 205 293 5 chr1 19900341 19900546 -262293118 + ORSL DNA AcHobo 12 275 0 484 273 23 41 chr1 19900695 19900867 -262292797 - MIR3 SINE MIR -33 175 7 186 43 0 0 chr1 19900879 19900902 -262292762 + (CA)n Simple_repeat Simple_repeat 1 23 0 294 281 68 27 chr1 19900987 19901133 -262292531 - MIR3 SINE MIR -48 160 9 482 173 87 139 chr1 19901504 19901565 -262292099 + MIR SINE MIR 99 162 -100 1483 152 9 111 chr1 19901565 19901881 -262291783 + AluJo SINE Alu 3 286 -16 482 173 87 139 chr1 19901881 19901992 -262291672 + MIR SINE MIR 162 262 0 355 237 79 26 chr1 19902316 19902430 -262291234 - MIR3 SINE MIR -54 154 35 244 61 0 0 chr1 19902668 19902701 -262290963 - L1PA10 LINE L1 -194 5974 5942 1144 76 19 19 chr1 19902701 19902859 -262290805 + L1PA10 LINE L1 6003 6160 -8 216 283 0 0 chr1 19903247 19903300 -262290364 - L2 LINE L2 0 3313 3261 462 234 32 24 chr1 19903537 19903678 -262289986 + MIR SINE MIR 2 144 -64 2036 134 0 0 chr1 19903812 19904102 -262289562 - AluSx SINE Alu -22 290 1 259 313 12 0 chr1 19904137 19904217 -262289447 + MIR3 SINE MIR 119 199 -9 2385 169 21 7 chr1 19904315 19904735 -262288929 - MSTB LTR MaLR 0 426 1 214 293 35 0 chr1 19905558 19905616 -262288048 + MIR SINE MIR 91 150 -112 344 181 0 60 chr1 19905636 19905719 -262287945 - MLT1J2 LTR MaLR 0 450 373 553 251 25 52 chr1 19905752 19905997 -262287667 - MLT1J2 LTR MaLR -172 237 1 227 329 35 0 chr1 19906000 19906085 -262287579 + MIR SINE MIR 172 259 -3 284 215 38 25 chr1 19906719 19906798 -262286866 - MIR SINE MIR -66 196 117 579 273 40 67 chr1 19907617 19907870 -262285794 + MIR SINE MIR 16 261 -1 362 326 121 8 chr1 19907891 19908023 -262285641 - MIR SINE MIR -10 252 106 255 274 16 0 chr1 19908267 19908329 -262285335 - MER5A DNA MER1_type -83 106 44 2097 126 10 0 chr1 19908429 19908723 -262284941 - AluSx SINE Alu -15 297 1 354 269 91 91 chr1 19908781 19908956 -262284708 + MIR SINE MIR 86 260 -2 380 191 0 56 chr1 19909883 19909972 -262283692 + MIR SINE MIR 68 151 -111 2077 104 0 0 chr1 19910616 19910894 -262282770 + AluSx SINE Alu 26 303 -9 417 90 0 0 chr1 19911009 19911076 -262282588 + (TC)n Simple_repeat Simple_repeat 1 67 0 255 264 0 0 chr1 19911146 19911237 -262282427 + (TG)n Simple_repeat Simple_repeat 2 92 0 2995 171 16 35 chr1 19911891 19911904 -262281760 + MER74A LTR ERVL 1 13 -545 1877 159 3 13 chr1 19911904 19912206 -262281458 - AluJo SINE Alu -13 299 1 2995 171 16 35 chr1 19912206 19912761 -262280903 + MER74A LTR ERVL 13 558 0 283 351 67 15 chr1 19913141 19913275 -262280389 + L2 LINE L2 3173 3313 0 280 288 31 69 chr1 19913901 19914061 -262279603 + MIR SINE MIR 95 248 -14 427 294 0 0 chr1 19914196 19914305 -262279359 + MIR SINE MIR 109 217 -45 267 294 20 29 chr1 19914454 19914556 -262279108 + MER5A DNA MER1_type 36 136 -53 2176 130 0 0 chr1 19914560 19914859 -262278805 + AluSx SINE Alu 1 299 -13 1590 102 37 0 chr1 19914861 19915077 -262278587 + AluSg/x SINE Alu 83 306 -4 766 114 0 21 chr1 19915106 19915246 -262278418 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 204 40 0 0 chr1 19915246 19915271 -262278393 + (CAGG)n Simple_repeat Simple_repeat 1 25 0 275 290 40 10 chr1 19915493 19915593 -262278071 + MIR SINE MIR 94 196 -66 304 316 22 22 chr1 19916098 19916237 -262277427 + Charlie8 DNA MER1_type 36 174 -2243 631 289 137 0 chr1 19916472 19916676 -262276988 - MIR SINE MIR -3 259 28 199 274 0 71 chr1 19921108 19921192 -262272472 + MIR SINE MIR 111 188 -74 258 300 23 39 chr1 19922036 19922166 -262271498 - MER117 DNA MER1_type -38 159 32 689 262 129 52 chr1 19922554 19922840 -262270824 - L2 LINE L2 0 3313 3006 348 266 55 18 chr1 19973360 19973469 -262220195 + MIR SINE MIR 91 203 -59 2832 90 3 0 chr1 19973630 19973984 -262219680 - THE1A LTR MaLR 0 355 1 832 249 119 57 chr1 19974130 19974608 -262219056 - MER34 LTR ERV1 -4 538 26 1799 134 49 14 chr1 19974608 19974892 -262218772 - AluJo SINE Alu -18 294 1 832 249 119 57 chr1 19974892 19974919 -262218745 - MER34 LTR ERV1 -516 26 2 280 227 47 47 chr1 19975227 19975355 -262218309 - LTR16C LTR ERVL -1 490 363 * 3908 174 96 1 chr1 19975318 19976066 -262217598 + LTR1B LTR ERV1 8 826 0 689 225 86 44 chr1 19976066 19976347 -262217317 - LTR16C LTR ERVL -74 417 98 248 232 0 0 chr1 19976525 19976581 -262217083 - L1MC4 LINE L1 0 8042 7987 3821 209 66 15 chr1 19976583 19977497 -262216167 - L1MC4 LINE L1 -142 7900 6941 271 250 0 0 chr1 19977542 19977556 -262216108 - LTR16A1 LTR ERVL -135 322 309 2369 83 0 3 chr1 19977556 19977856 -262215808 + AluY SINE Alu 1 299 -12 271 250 0 0 chr1 19977856 19977901 -262215763 - LTR16A1 LTR ERVL -147 310 263 1075 229 19 0 chr1 19978105 19978319 -262215345 - MER58A DNA MER1_type -6 218 1 1032 199 4 61 chr1 19978625 19978784 -262214880 + L1MB7 LINE L1 4935 5102 -1044 2268 64 0 3 chr1 19978784 19979229 -262214435 + AluY SINE Alu 1 444 0 1032 199 4 61 chr1 19979229 19979327 -262214337 + L1MB7 LINE L1 5102 5179 -967 2158 172 42 8 chr1 19979327 19979711 -262213953 + MLT2C1 LTR ERVL 1 397 0 1032 199 4 61 chr1 19979711 19979728 -262213936 + L1MB7 LINE L1 5179 5195 -951 2048 132 6 13 chr1 19979729 19980040 -262213624 + AluSc SINE Alu 1 309 0 410 125 0 14 chr1 19980057 19980129 -262213535 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 4599 164 65 13 chr1 19980129 19981058 -262212606 + L1MB7 LINE L1 5176 6155 -29 2109 157 29 35 chr1 19981058 19981435 -262212229 - THE1C LTR MaLR 0 375 1 4599 164 65 13 chr1 19981435 19981467 -262212197 + L1MB7 LINE L1 6155 6184 0 873 247 160 34 chr1 19981540 19981896 -262211768 + MLT1J LTR MaLR 53 453 -58 679 226 89 104 chr1 19981921 19982158 -262211506 - MLT1G3 LTR MaLR -70 525 210 1439 161 24 134 chr1 19982158 19982493 -262211171 - AluJb SINE Alu -1 301 4 679 226 89 104 chr1 19982493 19982625 -262211039 - MLT1G3 LTR MaLR -385 210 78 315 194 0 0 chr1 19982625 19982697 -262210967 - L1MEc LINE L1 -3515 2700 2629 1468 218 49 137 chr1 19982708 19983279 -262210385 - MLT1D LTR MaLR -2 503 1 1077 226 84 10 chr1 19983279 19983576 -262210088 - L1MEc LINE L1 -3591 2624 2306 796 112 7 132 chr1 19983578 19983730 -262209934 + AluJo SINE Alu 2 134 -178 4082 147 63 6 chr1 19983739 19984418 -262209246 + L1PA16 LINE L1 5433 6150 -16 2485 260 53 31 chr1 19984418 19985431 -262208233 - L1MEc LINE L1 -4044 2352 1317 1842 145 7 3 chr1 19985431 19985714 -262207950 + AluJb SINE Alu 11 294 -18 389 290 126 33 chr1 19985759 19985942 -262207722 + MIR SINE MIR 57 256 -6 216 0 0 0 chr1 19986639 19986663 -262207001 + (A)n Simple_repeat Simple_repeat 1 24 0 2249 39 0 0 chr1 19986721 19987021 -262206643 - AluY SINE Alu 0 328 29 474 39 39 0 chr1 19987583 19987660 -262206004 + (TG)n Simple_repeat Simple_repeat 2 81 0 339 224 31 20 chr1 19988602 19988700 -262204964 + MIR SINE MIR 81 179 -83 206 239 14 0 chr1 19988748 19988819 -262204845 + (ATG)n Simple_repeat Simple_repeat 1 72 0 482 343 5 25 chr1 19988990 19989191 -262204473 - MIR SINE MIR -46 216 20 1850 132 10 51 chr1 19989604 19989899 -262203765 + AluSc SINE Alu 1 283 -26 285 230 59 20 chr1 19990245 19990451 -262203213 - MLT1G LTR MaLR -249 300 22 4243 234 94 39 chr1 19991167 19992468 -262201196 + L1MB7 LINE L1 307 1536 -5289 2180 128 0 3 chr1 19992468 19992772 -262200892 + AluSc SINE Alu 1 303 -6 4243 234 94 39 chr1 19992772 19993310 -262200354 + L1MB7 LINE L1 1536 2043 -4782 487 145 0 0 chr1 19993310 19993386 -262200278 + MADE1 DNA Mariner 4 79 -1 4243 234 94 39 chr1 19993386 19993418 -262200246 + L1MB7 LINE L1 2043 2072 -4753 7212 132 54 20 chr1 19993418 19994609 -262199055 - Tigger3b DNA MER2_type 0 1231 1 4243 234 94 39 chr1 19994609 19994980 -262198684 + L1MB7 LINE L1 2072 2802 -4023 * 4769 169 56 15 chr1 19994977 19996726 -262196938 + L1MB7 LINE L1 4857 6682 0 1846 296 91 43 chr1 19996730 19996879 -262196785 + L1ME3A LINE L1 3961 4101 -2069 779 31 0 31 chr1 19996879 19996976 -262196688 - L1PA8 LINE L1 -1 6171 6078 1846 296 91 43 chr1 19996976 19997773 -262195891 + L1ME3A LINE L1 4101 4858 -1312 4143 90 19 5 chr1 19997773 19998337 -262195327 - L1PB2 LINE L1 0 6151 5580 1846 296 91 43 chr1 19998337 19998677 -262194987 + L1ME3A LINE L1 4858 5180 -990 2091 134 13 0 chr1 19998677 19998984 -262194680 + AluSx SINE Alu 1 311 -1 1846 296 91 43 chr1 19998984 19999569 -262194095 + L1ME3A LINE L1 5180 5947 -223 426 195 0 0 chr1 19999811 19999898 -262193766 + CT-rich Low_complexity Low_complexity 1 87 0 399 277 132 60 chr1 20000032 20000267 -262193397 - L2 LINE L2 -217 3055 2804 585 174 35 9 chr1 20000867 20000982 -262192682 + ORSL DNA AcHobo 1 118 -157 864 131 69 14 chr1 20001107 20001252 -262192412 + ORSL DNA AcHobo 119 271 -4 429 20 0 0 chr1 20001953 20002003 -262191661 + (CA)n Simple_repeat Simple_repeat 2 51 0 1061 178 27 5 chr1 20002281 20002466 -262191198 - MER5A DNA MER1_type 0 189 1 889 113 21 103 chr1 20002563 20002757 -262190907 - L1PA6 LINE L1 0 6154 5977 260 304 43 29 chr1 20003015 20003153 -262190511 - MIR SINE MIR -117 145 6 334 261 162 81 chr1 20003160 20003531 -262190133 - MLT1L LTR MaLR 0 615 215 196 261 0 108 chr1 20003750 20003815 -262189849 - L2 LINE L2 -7 3265 3208 503 267 59 7 chr1 20003817 20003952 -262189712 + MIR SINE MIR 2 143 -119 21 0 0 0 chr1 20004261 20004282 -262189382 + GC_rich Low_complexity Low_complexity 1 21 0 1736 173 3 7 chr1 20004361 20004656 -262189008 + AluJb SINE Alu 1 294 -18 291 209 35 35 chr1 20004657 20004743 -262188921 - MIR SINE MIR -93 169 84 612 236 116 33 chr1 20005387 20005482 -262188182 - MIR SINE MIR 0 262 176 2155 157 36 33 chr1 20005482 20005845 -262187819 + THE1B LTR MaLR 1 364 0 612 236 116 33 chr1 20005845 20005990 -262187674 - MIR SINE MIR -86 176 2 282 264 81 0 chr1 20007069 20007156 -262186508 - MIR SINE MIR -8 254 161 * 638 352 97 26 chr1 20007155 20007797 -262185867 + L2 LINE L2 2239 2925 -389 2071 214 30 28 chr1 20008058 20008558 -262185106 + MLT1D LTR MaLR 1 501 -4 336 206 0 0 chr1 20008566 20008629 -262185035 - MIR SINE MIR -124 138 76 393 314 118 10 chr1 20009162 20009366 -262184298 - MIR SINE MIR -17 245 20 307 210 3 38 chr1 20009937 20010022 -262183642 + MLT1F LTR MaLR 472 542 0 2466 65 0 0 chr1 20010328 20010634 -262183030 + AluY SINE Alu 1 306 -5 629 315 110 27 chr1 20010965 20011374 -262182290 + MLT1J LTR MaLR 8 450 -61 415 305 80 33 chr1 20011858 20012071 -262181593 + MIR SINE MIR 28 250 -12 213 273 45 80 chr1 20012320 20012408 -262181256 + L2 LINE L2 3182 3266 -6 374 320 74 11 chr1 20012700 20012875 -262180789 + MIR3 SINE MIR 20 205 -3 263 298 126 7 chr1 20013144 20013295 -262180369 - L2 LINE L2 -3 3269 3101 305 176 0 0 chr1 20013380 20013431 -262180233 - MER81 DNA DNA -62 52 2 273 180 0 49 chr1 20014559 20014620 -262179044 - L2 LINE L2 -2 3311 3254 211 211 0 19 chr1 20014720 20014772 -262178892 + CT-rich Low_complexity Low_complexity 2 52 0 792 333 20 4 chr1 20014782 20015034 -262178630 - MIR SINE MIR -5 257 2 466 326 27 11 chr1 20015188 20015372 -262178292 + MIR SINE MIR 47 233 -29 795 231 74 0 chr1 20015407 20015610 -262178054 + LTR16A1 LTR ERVL 207 424 -33 1955 130 0 0 chr1 20015743 20016020 -262177644 + AluSq SINE Alu 1 277 -36 756 61 0 0 chr1 20016021 20016119 -262177545 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 1224 59 0 32 chr1 20016119 20016305 -262177359 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 255 224 17 0 chr1 20016829 20016887 -262176777 - L2 LINE L2 0 3313 3255 492 291 63 26 chr1 20016957 20017182 -262176482 + MIR SINE MIR 22 259 -3 193 348 95 40 chr1 20017262 20017558 -262176106 + L2 LINE L2 2553 2864 -450 1049 244 62 12 chr1 20017734 20018054 -262175610 - MLT1C LTR MaLR -128 339 4 406 259 82 10 chr1 20018060 20018204 -262175460 - MIR SINE MIR -58 150 6 495 323 69 11 chr1 20018248 20018437 -262175227 - MIR SINE MIR -53 209 10 222 200 0 0 chr1 20018624 20018669 -262174995 + (CA)n Simple_repeat Simple_repeat 1 45 0 232 281 0 0 chr1 20019286 20019343 -262174321 + MIR SINE MIR 87 143 -65 226 320 130 0 chr1 20019362 20019462 -262174202 + MIR SINE MIR 2 114 -148 1933 202 47 55 chr1 20019488 20019997 -262173667 + MLT1D LTR MaLR 1 505 0 1314 168 86 57 chr1 20020201 20020481 -262173183 - AluJo SINE Alu -24 288 1 540 223 85 8 chr1 20020495 20020625 -262173039 + L2 LINE L2 3168 3307 -6 217 139 0 0 chr1 20020721 20020757 -262172907 + MIR SINE MIR 109 144 -64 752 235 92 41 chr1 20021314 20021510 -262172154 - MER63A DNA MER1_type -4 206 1 242 361 92 0 chr1 20022145 20022275 -262171389 - MIR SINE MIR -102 160 19 827 117 0 8 chr1 20022797 20022917 -262170747 + AluSg/x SINE Alu 186 304 -6 219 139 0 0 chr1 20023209 20023245 -262170419 + (CCCA)n Simple_repeat Simple_repeat 1 36 0 522 294 31 6 chr1 20023262 20023425 -262170239 + L2 LINE L2 2918 3084 -229 408 338 108 7 chr1 20023619 20023924 -262169740 - L2 LINE L2 -18 3254 2919 183 301 188 25 chr1 20023944 20024306 -262169358 - L2 LINE L2 -568 2746 2326 225 196 29 69 chr1 20024391 20024493 -262169171 + (CAGGG)n Simple_repeat Simple_repeat 3 100 0 266 263 32 63 chr1 20024544 20024639 -262169025 - MIR3 SINE MIR -24 184 93 322 270 87 16 chr1 20024860 20024986 -262168678 - MLT1I LTR MaLR -266 143 9 328 335 95 6 chr1 20025008 20025187 -262168477 - MIR SINE MIR -21 241 47 326 188 113 0 chr1 20025758 20025838 -262167826 + L2 LINE L2 3225 3313 0 615 286 12 7 chr1 20026621 20026813 -262166851 - MIR SINE MIR -65 143 3 353 325 204 5 chr1 20026965 20027156 -262166508 - MIR SINE MIR -11 251 23 2002 141 20 0 chr1 20027636 20028001 -262165663 + AluSx SINE Alu 1 371 0 265 189 156 0 chr1 20028084 20028174 -262165490 - MIR SINE MIR -49 159 42 523 298 259 18 chr1 20028521 20029837 -262163827 + L2 LINE L2 1329 2962 -352 246 359 28 69 chr1 20029968 20030113 -262163551 + L2 LINE L2 3134 3272 0 318 311 10 0 chr1 20030184 20030287 -262163377 - MIR SINE MIR -112 150 47 455 245 19 0 chr1 20030623 20030729 -262162935 - MIR SINE MIR -71 137 30 194 167 0 48 chr1 20030957 20030999 -262162665 + L2 LINE L2 3153 3192 -80 283 374 25 10 chr1 20031116 20031314 -262162350 + L1MC5 LINE L1 7727 7927 -34 250 329 24 0 chr1 20031389 20031474 -262162190 - MIR SINE MIR -12 250 164 313 332 80 30 chr1 20031599 20031798 -262161866 - MARNA DNA Mariner -133 453 245 639 290 54 84 chr1 20032140 20032582 -262161082 + L2 LINE L2 2824 3252 -20 327 243 43 0 chr1 20032609 20032679 -262160985 + MIR SINE MIR 102 174 -88 751 278 50 73 chr1 20032679 20032835 -262160829 - L2 LINE L2 -1 3312 3154 3018 116 118 27 chr1 20032835 20033318 -262160346 - MER1A DNA MER1_type 0 527 1 751 278 50 73 chr1 20033318 20033406 -262160258 - L2 LINE L2 -159 3154 3066 2240 92 3 0 chr1 20033406 20033700 -262159964 - AluSp SINE Alu -18 295 1 751 278 50 73 chr1 20033700 20033890 -262159774 - L2 LINE L2 -247 3066 2887 236 250 0 17 chr1 20034670 20034730 -262158934 + GA-rich Low_complexity Low_complexity 1 59 0 26 0 0 0 chr1 20034886 20034912 -262158752 + GC_rich Low_complexity Low_complexity 1 26 0 979 319 72 12 chr1 20035311 20035588 -262158076 - L2 LINE L2 0 3313 3001 1615 106 18 0 chr1 20035588 20035814 -262157850 - AluSp SINE Alu -19 294 65 979 319 72 12 chr1 20035814 20035953 -262157711 - L2 LINE L2 -312 3001 2872 428 309 22 0 chr1 20036429 20036565 -262157099 - MIR SINE MIR -34 228 90 1988 104 3 31 chr1 20036565 20036854 -262156810 + AluSq SINE Alu 1 281 -32 647 241 30 12 chr1 20037449 20037615 -262156049 - MER63A DNA MER1_type 0 210 42 195 114 0 0 chr1 20037768 20037803 -262155861 + (TA)n Simple_repeat Simple_repeat 2 36 0 244 259 0 25 chr1 20037810 20037891 -262155773 + MER116 DNA Mariner 1 79 -1 342 308 7 86 chr1 20037935 20038122 -262155542 + MIR3 SINE MIR 21 192 -32 220 240 124 33 chr1 20038538 20038659 -262155005 + MIR SINE MIR 23 154 -108 1608 177 3 20 chr1 20038659 20038953 -262154711 - AluJo SINE Alu -23 289 1 697 219 33 0 chr1 20039128 20039279 -262154385 + MIR SINE MIR 51 206 -56 1671 137 7 75 chr1 20039292 20039621 -262154043 + AluSx SINE Alu 1 308 0 946 226 24 32 chr1 20039629 20039877 -262153787 - MIR SINE MIR -12 250 5 2104 134 0 0 chr1 20040368 20040673 -262152991 + AluSx SINE Alu 1 305 -7 334 275 207 42 chr1 20040690 20040883 -262152781 + MIR SINE MIR 36 260 -2 239 298 106 10 chr1 20041652 20041756 -262151908 + MIR3 SINE MIR 9 122 -86 330 294 11 0 chr1 20041775 20041886 -262151778 + L2 LINE L2 3153 3308 -5 650 290 73 30 chr1 20042168 20042468 -262151196 - MER102b DNA MER1_type -3 338 26 223 400 27 0 chr1 20042897 20043047 -262150617 - MIR3 SINE MIR -9 199 46 237 293 198 0 chr1 20043470 20043576 -262150088 - MIR SINE MIR -79 183 57 699 293 43 12 chr1 20043930 20044183 -262149481 - L1ME3 LINE L1 0 6162 5902 1770 264 94 4 chr1 20044187 20044707 -262148957 + MLT1G1 LTR MaLR 1 567 -28 780 154 12 6 chr1 20044799 20044961 -262148703 + GA-rich Low_complexity Low_complexity 3 165 0 508 217 179 43 chr1 20044990 20045034 -262148630 - MLT1K LTR MaLR -66 522 485 2132 166 121 16 chr1 20045034 20045457 -262148207 - MLT1C LTR MaLR 0 467 1 508 217 179 43 chr1 20045457 20045596 -262148068 - MLT1K LTR MaLR -103 485 314 463 306 53 29 chr1 20046205 20046414 -262147250 - L2 LINE L2 -2 3311 3098 1917 144 17 3 chr1 20046732 20047030 -262146634 + AluJb SINE Alu 1 302 -10 389 234 0 54 chr1 20047067 20047178 -262146486 + L1ME3A LINE L1 6060 6164 -6 703 137 0 24 chr1 20047201 20047325 -262146339 + L1MA5A LINE L1 6177 6297 0 637 175 10 0 chr1 20047629 20047732 -262145932 + FLAM_A SINE Alu 4 107 -35 356 287 42 21 chr1 20048520 20048663 -262145001 + L2 LINE L2 3162 3307 -6 488 291 30 0 chr1 20049210 20049344 -262144320 - MIR SINE MIR -54 208 71 182 237 17 0 chr1 20049646 20049705 -262143959 + L2 LINE L2 2551 2610 -704 595 302 150 18 chr1 20049709 20050090 -262143574 + L2 LINE L2 2842 3272 0 531 291 51 7 chr1 20050508 20050708 -262142956 + MIR SINE MIR 31 241 -21 180 0 0 0 chr1 20050954 20050974 -262142690 + (A)n Simple_repeat Simple_repeat 1 20 0 1793 165 0 7 chr1 20050978 20051275 -262142389 + AluJo SINE Alu 1 295 -17 286 252 126 39 chr1 20051675 20051802 -262141862 - MIR3 SINE MIR -37 171 34 423 223 22 86 chr1 20052295 20052434 -262141230 + MLT1H LTR MaLR 81 210 -339 1822 153 3 20 chr1 20052443 20052744 -262140920 + AluJb SINE Alu 3 298 -14 294 241 0 0 chr1 20052791 20052878 -262140786 + (CACCAT)n Simple_repeat Simple_repeat 4 90 0 209 404 20 10 chr1 20053346 20053445 -262140219 + MIR SINE MIR 22 121 -141 1372 147 34 0 chr1 20053867 20054105 -262139559 + AluSx SINE Alu 58 303 -9 976 232 160 71 chr1 20054193 20054724 -262138940 - L2 LINE L2 -10 3303 2820 1661 159 24 14 chr1 20054724 20055013 -262138651 + AluJo SINE Alu 6 297 -15 2258 69 14 3 chr1 20055015 20055305 -262138359 + AluY SINE Alu 3 295 -16 976 232 160 71 chr1 20055305 20055477 -262138187 - L2 LINE L2 -493 2820 2665 2908 86 5 0 chr1 20055477 20055850 -262137814 - THE1C LTR MaLR 0 375 1 976 232 160 71 chr1 20055850 20055885 -262137779 - L2 LINE L2 -648 2665 2490 2167 147 0 0 chr1 20055935 20056270 -262137394 - AluJb SINE Alu 0 335 1 337 350 102 0 chr1 20056847 20057004 -262136660 - MIR SINE MIR -74 188 16 612 290 70 0 chr1 20057273 20057459 -262136205 - MIR SINE MIR -15 247 49 254 172 16 139 chr1 20057898 20057963 -262135701 + MER113 DNA MER1_type? 12 58 -463 2068 123 3 3 chr1 20057963 20058290 -262135374 - AluSx SINE Alu 0 327 1 254 172 16 139 chr1 20058290 20058345 -262135319 + MER113 DNA MER1_type? 58 118 -403 554 304 11 11 chr1 20058718 20058902 -262134762 - L2 LINE L2 -176 3096 2913 303 264 153 35 chr1 20059090 20059234 -262134430 - MIR SINE MIR -47 161 1 492 289 16 8 chr1 20059255 20059383 -262134281 + MIR3 SINE MIR 27 155 -53 513 248 45 46 chr1 20059410 20059582 -262134082 - MIR SINE MIR -62 146 18 969 182 12 24 chr1 20060649 20060854 -262132810 - MIR SINE MIR -14 248 46 336 348 43 14 chr1 20060826 20060967 -262132697 - MIR3 SINE MIR -17 191 47 * 2829 214 89 48 chr1 20061187 20061386 -262132278 + L1ME1 LINE L1 5318 5507 -659 2468 91 7 0 chr1 20061386 20061695 -262131969 + AluSx SINE Alu 1 311 -1 2829 214 89 48 chr1 20061695 20062243 -262131421 + L1ME1 LINE L1 5507 6103 -63 2286 131 0 3 chr1 20062243 20062556 -262131108 + AluSx SINE Alu 1 312 0 2829 214 89 48 chr1 20062556 20062618 -262131046 + L1ME1 LINE L1 6103 6161 -5 195 259 86 0 chr1 20062816 20062874 -262130790 - MIR3 SINE MIR -30 178 116 410 296 16 8 chr1 20063077 20063202 -262130462 + MIR SINE MIR 29 154 -108 465 327 16 28 chr1 20063218 20063469 -262130195 - MLT1L LTR MaLR -8 607 360 320 338 108 10 chr1 20063971 20064175 -262129489 - L1MC4a LINE L1 -1690 6118 5895 1172 301 63 12 chr1 20064180 20064688 -262128976 - L1MC4a LINE L1 -1979 5829 5296 2221 88 7 33 chr1 20064800 20065147 -262128517 - AluSx SINE Alu 0 312 1 1161 182 53 0 chr1 20065171 20065290 -262128374 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 20065290 20065316 -262128348 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1161 182 53 0 chr1 20065316 20065405 -262128259 + AluJo SINE Alu 137 220 -92 430 336 91 5 chr1 20065454 20065829 -262127835 - L1MC4a LINE L1 -999 5147 4741 663 261 53 13 chr1 20066106 20066304 -262127360 - L1ME3A LINE L1 -11 6159 5949 393 45 0 286 chr1 20066304 20066416 -262127248 + MADE1 DNA Mariner 1 80 0 663 261 53 13 chr1 20066416 20066443 -262127221 - L1ME3A LINE L1 -221 5949 5925 * 6230 33 1 10 chr1 20066442 20067223 -262126441 - L1PA5 LINE L1 0 6154 5381 1385 93 0 271 chr1 20067300 20067558 -262126106 - AluJb SINE Alu -12 300 186 2243 87 28 3 chr1 20067558 20067847 -262125817 - AluY SINE Alu -15 296 1 1385 93 0 271 chr1 20067847 20067987 -262125677 - AluJb SINE Alu -126 186 10 670 264 24 0 chr1 20067999 20068166 -262125498 - L1ME3A LINE L1 -265 5905 5735 1800 178 0 7 chr1 20068219 20068512 -262125152 + AluJo SINE Alu 1 291 -21 530 286 19 0 chr1 20068543 20068697 -262124967 - L1ME3A LINE L1 -462 5700 5544 436 322 50 52 chr1 20068698 20069130 -262124534 + MLT1J1 LTR MaLR 16 450 0 259 295 93 20 chr1 20069314 20069616 -262124048 - L1M4 LINE L1 -3676 2470 2147 266 56 0 0 chr1 20069962 20069998 -262123666 + tRNA-Gln-CAG tRNA tRNA 3 38 -37 225 341 9 24 chr1 20070007 20070218 -262123446 - HAL1b LINE L1 -457 891 684 395 311 15 29 chr1 20070229 20070435 -262123229 - HAL1b LINE L1 -716 632 430 2194 83 0 4 chr1 20071101 20071377 -262122287 + AluY SINE Alu 36 310 -1 510 118 35 0 chr1 20071423 20071508 -262122156 - MER2 DNA MER2_type -139 206 119 696 167 0 0 chr1 20071510 20071618 -262122046 + AluSx SINE Alu 2 109 -204 1255 150 0 34 chr1 20071831 20072038 -262121626 + AluSx SINE Alu 108 307 -5 489 179 0 0 chr1 20072038 20072122 -262121542 - MER2 DNA MER2_type -213 132 49 355 347 114 0 chr1 20072153 20072346 -262121318 - L2 LINE L2 -178 3135 2921 2254 122 3 3 chr1 20072401 20072713 -262120951 + AluSx SINE Alu 1 312 0 1222 122 6 22 chr1 20072737 20072918 -262120746 + AluJb SINE Alu 118 295 -17 2065 138 6 31 chr1 20072918 20073268 -262120396 + AluSx SINE Alu 1 312 0 554 196 65 7 chr1 20073311 20073449 -262120215 - L2 LINE L2 -533 2781 2636 187 239 55 92 chr1 20073976 20074085 -262119579 - MIR SINE MIR -49 213 109 1724 166 40 3 chr1 20074797 20075093 -262118571 - AluJo SINE Alu -5 307 1 350 292 62 15 chr1 20075121 20075251 -262118413 + L2 LINE L2 3134 3269 -3 327 154 11 33 chr1 20075670 20075761 -262117903 + GA-rich Low_complexity Low_complexity 3 91 0 198 0 0 0 chr1 20075762 20075784 -262117880 + (A)n Simple_repeat Simple_repeat 1 22 0 190 282 0 28 chr1 20076057 20076128 -262117536 - MIR SINE MIR -82 126 58 21 0 0 0 chr1 20076324 20076345 -262117319 + AT_rich Low_complexity Low_complexity 1 21 0 443 309 40 7 chr1 20076419 20076571 -262117093 + MIR3 SINE MIR 29 185 -23 2398 86 3 0 chr1 20076739 20077041 -262116623 + AluSq SINE Alu 1 303 -10 322 333 25 0 chr1 20077069 20077189 -262116475 - MIR SINE MIR -74 188 66 380 116 128 0 chr1 20077487 20077573 -262116091 - MER53 DNA DNA -86 103 7 364 214 0 0 chr1 20077867 20077937 -262115727 + MIR SINE MIR 78 147 -61 400 306 22 0 chr1 20078347 20078481 -262115183 + L2 LINE L2 3136 3272 0 511 260 117 0 chr1 20078483 20078637 -262115027 - MIR SINE MIR -87 175 4 1105 113 11 8 chr1 20078651 20079003 -262114661 + (TGAA)n Simple_repeat Simple_repeat 3 354 0 342 299 88 7 chr1 20079281 20079428 -262114236 + MIR SINE MIR 40 198 -64 183 320 50 10 chr1 20079833 20079933 -262113731 + MIR SINE MIR 30 133 -75 469 253 70 38 chr1 20080184 20080342 -262113322 - MIR SINE MIR -68 194 32 320 227 53 0 chr1 20080548 20080623 -262113041 - MIR SINE MIR -115 147 69 1796 156 58 14 chr1 20080655 20080950 -262112714 - AluJb SINE Alu -4 308 1 287 280 27 0 chr1 20081404 20081479 -262112185 + L2 LINE L2 3234 3310 -3 266 301 12 12 chr1 20083628 20083711 -262109953 + MIR3 SINE MIR 107 189 -19 373 245 9 19 chr1 20083724 20083830 -262109834 - MIR SINE MIR -49 213 109 320 222 101 0 chr1 20084303 20084402 -262109262 - MER20 DNA MER1_type -82 137 29 404 306 82 0 chr1 20084456 20084590 -262109074 + MIR SINE MIR 12 156 -106 954 209 9 41 chr1 20084933 20085153 -262108511 + MER20 DNA MER1_type 6 218 -1 254 287 57 41 chr1 20085611 20085733 -262107931 - MIR SINE MIR -16 246 123 1409 219 52 21 chr1 20085936 20086062 -262107602 + L1MB5 LINE L1 5780 5901 -273 2273 118 0 0 chr1 20086062 20086358 -262107306 + AluSx SINE Alu 1 296 -16 1409 219 52 21 chr1 20086358 20086614 -262107050 + L1MB5 LINE L1 5901 6174 0 227 185 0 37 chr1 20086618 20086646 -262107018 + A-rich Low_complexity Low_complexity 1 28 -24 1593 134 0 119 chr1 20086646 20086778 -262106886 + AluJo SINE Alu 1 147 -155 1834 150 55 4 chr1 20086778 20087051 -262106613 + AluSx SINE Alu 1 287 -25 1593 134 0 119 chr1 20087051 20087261 -262106403 + AluJo SINE Alu 147 302 0 227 185 0 37 chr1 20087261 20087286 -262106378 + A-rich Low_complexity Low_complexity 28 52 0 1001 131 0 6 chr1 20087395 20087563 -262106101 + (GGAA)n Simple_repeat Simple_repeat 2 168 0 305 303 45 65 chr1 20088042 20088197 -262105467 + L1ME4a LINE L1 5759 5910 -211 1982 128 57 0 chr1 20088773 20089055 -262104609 + AluSx SINE Alu 1 298 -14 2174 115 0 11 chr1 20089057 20089364 -262104300 + AluSq SINE Alu 1 304 0 420 248 26 0 chr1 20089511 20089628 -262104036 - MIR SINE MIR -123 139 20 1920 114 85 0 chr1 20089764 20090067 -262103597 + AluSg SINE Alu 3 310 0 622 274 34 6 chr1 20090076 20090255 -262103409 - MIR SINE MIR -32 230 47 1873 156 30 7 chr1 20091110 20091405 -262102259 + AluJb SINE Alu 1 302 -10 451 274 48 20 chr1 20091648 20091794 -262101870 - MIR3 SINE MIR -29 179 30 942 133 5 109 chr1 20092177 20092239 -262101425 - MER5A DNA MER1_type -1 188 121 2049 151 0 0 chr1 20092239 20092538 -262101126 + AluJb SINE Alu 1 299 -13 942 133 5 109 chr1 20092538 20092685 -262100979 - MER5A DNA MER1_type -68 121 1 218 290 14 0 chr1 20092843 20092912 -262100752 + L2 LINE L2 3232 3301 -12 257 338 35 0 chr1 20093164 20093306 -262100358 - L1ME4a LINE L1 -31 6090 5944 2443 62 13 16 chr1 20093443 20093750 -262099914 + AluSp SINE Alu 1 306 -7 2020 148 0 7 chr1 20093759 20094069 -262099595 + AluJb SINE Alu 1 308 -4 2373 77 0 10 chr1 20094078 20094377 -262099287 + AluY SINE Alu 1 296 -15 816 269 8 26 chr1 20094387 20094621 -262099043 + MIR SINE MIR 29 258 -4 699 286 115 34 chr1 20094677 20095174 -262098490 - L1ME4a LINE L1 -318 5803 5267 471 325 102 15 chr1 20095727 20095954 -262097710 - MIR SINE MIR -15 247 1 239 298 91 16 chr1 20095954 20096059 -262097605 + MIR SINE MIR 52 165 -97 2122 132 10 0 chr1 20096449 20096745 -262096919 - AluSx SINE Alu -13 299 1 2123 153 0 0 chr1 20096949 20097257 -262096407 + AluSx SINE Alu 1 308 -4 1746 167 17 3 chr1 20097518 20097805 -262095859 + AluJb SINE Alu 1 291 -21 1702 196 81 37 chr1 20097818 20098302 -262095362 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr1 20098429 20098471 -262095193 + AT_rich Low_complexity Low_complexity 1 42 0 535 328 23 0 chr1 20098474 20098645 -262095019 + MIR SINE MIR 67 241 -21 1855 133 0 81 chr1 20098660 20098890 -262094774 - AluSq SINE Alu -17 296 98 2377 100 3 0 chr1 20098890 20099191 -262094473 - AluSx SINE Alu -10 302 1 1855 133 0 81 chr1 20099191 20099282 -262094382 - AluSq SINE Alu -215 98 1 219 36 0 0 chr1 20099374 20099402 -262094262 + (CA)n Simple_repeat Simple_repeat 1 28 0 263 289 33 11 chr1 20100140 20100230 -262093434 - L2 LINE L2 0 3272 3181 1123 158 0 0 chr1 20100306 20100483 -262093181 + AluSp SINE Alu 137 313 0 344 306 122 0 chr1 20100502 20100682 -262092982 + MIR SINE MIR 57 258 -4 267 230 200 20 chr1 20101111 20101211 -262092453 - L2 LINE L2 0 3313 3196 298 185 22 51 chr1 20102333 20102511 -262091153 + GA-rich Low_complexity Low_complexity 2 174 0 2186 123 0 3 chr1 20102541 20102842 -262090822 + AluSx SINE Alu 12 311 -1 356 274 11 11 chr1 20102850 20103029 -262090635 + GA-rich Low_complexity Low_complexity 2 180 0 209 183 17 0 chr1 20104364 20104424 -262089240 + GA-rich Low_complexity Low_complexity 1 61 0 252 266 32 11 chr1 20105357 20105451 -262088213 + (TA)n Simple_repeat Simple_repeat 2 97 0 279 0 0 0 chr1 20107014 20107045 -262086619 + (TCC)n Simple_repeat Simple_repeat 2 32 0 497 124 10 0 chr1 20111690 20111787 -262081877 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 276 30 0 0 chr1 20112015 20112048 -262081616 + (TG)n Simple_repeat Simple_repeat 2 34 0 214 293 0 0 chr1 20112488 20112546 -262081118 + GA-rich Low_complexity Low_complexity 2 59 0 200 196 65 0 chr1 20112958 20113004 -262080660 + G-rich Low_complexity Low_complexity 2 50 0 213 225 0 0 chr1 20114446 20114486 -262079178 + GA-rich Low_complexity Low_complexity 2 41 0 230 190 35 52 chr1 20116683 20116741 -262076923 + G-rich Low_complexity Low_complexity 3 59 0 22 35 0 0 chr1 20117036 20117065 -262076599 + GC_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr1 20118339 20118380 -262075284 + AT_rich Low_complexity Low_complexity 1 41 0 266 260 10 20 chr1 20119123 20119223 -262074441 + G-rich Low_complexity Low_complexity 1 99 0 283 310 35 53 chr1 20120512 20120625 -262073039 + MIR3 SINE MIR 52 162 -46 475 252 150 7 chr1 20121099 20121246 -262072418 - L2 LINE L2 -1 3312 3145 229 237 17 0 chr1 20121312 20121371 -262072293 + (TG)n Simple_repeat Simple_repeat 1 60 0 186 278 0 19 chr1 20122641 20122695 -262070969 + MIR SINE MIR 113 165 -97 183 42 0 0 chr1 20123083 20123107 -262070557 + (CGCGG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 20123112 20123133 -262070531 + GC_rich Low_complexity Low_complexity 1 21 0 232 252 9 56 chr1 20123177 20123284 -262070380 + G-rich Low_complexity Low_complexity 1 102 0 214 372 36 15 chr1 20123517 20123654 -262070010 + MIR3 SINE MIR 67 206 -2 1974 160 0 3 chr1 20124540 20124853 -262068811 - AluJb SINE Alu 0 312 1 289 241 172 0 chr1 20125291 20125378 -262068286 - MIR3 SINE MIR -20 188 87 210 130 109 0 chr1 20125568 20125614 -262068050 - MIR SINE MIR -123 139 89 288 359 42 35 chr1 20126036 20126178 -262067486 + MIR3 SINE MIR 59 201 -7 183 272 97 39 chr1 20126514 20126617 -262067047 + MIR SINE MIR 19 127 -81 265 363 35 0 chr1 20126872 20126985 -262066679 - MIR3 SINE MIR -49 159 43 314 316 59 26 chr1 20127230 20127382 -262066282 + MIR3 SINE MIR 3 159 -49 228 213 0 0 chr1 20128006 20128053 -262065611 + C-rich Low_complexity Low_complexity 1 47 0 584 297 96 23 chr1 20128501 20128804 -262064860 - L2 LINE L2 -1 3312 2988 297 289 67 44 chr1 20128841 20128976 -262064688 - MIR SINE MIR -18 244 107 457 337 86 0 chr1 20129046 20129221 -262064443 - MIR SINE MIR -25 237 48 195 139 0 0 chr1 20129389 20129425 -262064239 + (T)n Simple_repeat Simple_repeat 1 36 0 458 282 40 0 chr1 20129911 20130035 -262063629 - MIR SINE MIR -114 148 20 559 193 40 47 chr1 20130961 20131111 -262062553 - MIR SINE MIR -68 194 46 378 57 0 0 chr1 20131981 20132034 -262061630 + (TG)n Simple_repeat Simple_repeat 1 53 0 451 273 65 26 chr1 20132229 20132383 -262061281 + MIR SINE MIR 103 262 0 2059 102 7 20 chr1 20132424 20132728 -262060936 + AluSx SINE Alu 3 302 -10 1916 137 13 3 chr1 20132923 20133223 -262060441 + AluJb SINE Alu 1 303 -9 277 222 0 16 chr1 20134409 20134472 -262059192 + C-rich Low_complexity Low_complexity 3 64 0 311 306 106 25 chr1 20134602 20134762 -262058902 - MIR SINE MIR -1 261 89 422 241 0 37 chr1 20135149 20135336 -262058328 + (TG)n Simple_repeat Simple_repeat 1 180 0 212 287 35 91 chr1 20135363 20135506 -262058158 + L2 LINE L2 3163 3297 -16 485 221 10 0 chr1 20135918 20136022 -262057642 - MER81 DNA DNA -9 105 1 301 320 10 10 chr1 20136380 20136480 -262057184 + MIR SINE MIR 18 117 -145 278 297 54 18 chr1 20137088 20137199 -262056465 + MIR SINE MIR 98 212 -50 393 285 204 16 chr1 20137698 20137884 -262055780 + MIR SINE MIR 23 243 -19 224 337 20 50 chr1 20138423 20138524 -262055140 + MIR SINE MIR 68 165 -97 294 29 0 0 chr1 20138627 20138662 -262055002 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 1999 144 3 10 chr1 20138771 20139083 -262054581 - AluSx SINE Alu -2 310 1 469 313 44 62 chr1 20139089 20139361 -262054303 - L1ME4a LINE L1 -6 6115 5849 351 277 2 126 chr1 20139473 20139582 -262054082 - MIR SINE MIR -62 146 73 1960 138 3 0 chr1 20139582 20139892 -262053772 - AluSx SINE Alu 0 311 1 351 277 2 126 chr1 20139892 20139932 -262053732 - MIR SINE MIR -135 73 30 592 204 99 14 chr1 20140333 20140475 -262053189 - MIR3 SINE MIR -4 204 51 348 250 37 98 chr1 20140734 20140898 -262052766 - MIR SINE MIR -51 211 58 * 383 183 10 87 chr1 20140873 20140977 -262052687 - MIR3 SINE MIR -9 199 104 595 276 162 18 chr1 20141158 20141386 -262052278 + MIR SINE MIR 2 262 0 2301 101 3 0 chr1 20141575 20141883 -262051781 - AluSc SINE Alu 0 309 1 1980 137 3 7 chr1 20141883 20142182 -262051482 - AluSx SINE Alu -14 298 1 715 187 41 0 chr1 20142237 20142360 -262051304 + FLAM_C SINE Alu 1 128 -5 181 357 18 27 chr1 20143227 20143339 -262050325 - L3b LINE CR1 -155 1428 1318 389 211 128 28 chr1 20143360 20143469 -262050195 + MIR SINE MIR 51 170 -92 760 48 19 0 chr1 20143558 20143663 -262050001 + (GGAA)n Simple_repeat Simple_repeat 1 107 0 789 188 55 12 chr1 20144251 20144416 -262049248 + MER5B DNA MER1_type 1 172 -6 318 362 64 7 chr1 20144474 20144615 -262049049 + MIR SINE MIR 109 257 -5 1740 173 0 10 chr1 20144629 20144918 -262048746 + AluJb SINE Alu 1 286 -26 578 254 14 0 chr1 20145661 20145799 -262047865 + MIR3 SINE MIR 49 188 -20 492 259 81 51 chr1 20145891 20146054 -262047610 + MIR SINE MIR 39 210 -52 2062 77 4 0 chr1 20146054 20146315 -262047349 + AluSg SINE Alu 41 302 -8 492 259 81 51 chr1 20146315 20146348 -262047316 + MIR SINE MIR 210 241 -21 200 374 157 0 chr1 20146378 20146461 -262047203 + MIR SINE MIR 107 202 -60 293 283 107 78 chr1 20147817 20147912 -262045752 + MIR SINE MIR 46 137 -125 1564 166 57 33 chr1 20147912 20148213 -262045451 + AluJo SINE Alu 1 308 -4 293 283 107 78 chr1 20148213 20148322 -262045342 + MIR SINE MIR 137 256 -6 2052 114 10 16 chr1 20148807 20149114 -262044550 - AluSx SINE Alu -7 305 1 488 330 93 8 chr1 20149286 20149522 -262044142 + MIR SINE MIR 7 262 0 547 252 0 0 chr1 20150332 20150443 -262043221 - L2 LINE L2 -1 3312 3202 536 189 195 38 chr1 20151031 20151190 -262042474 + MER5A DNA MER1_type 1 184 -5 384 248 73 51 chr1 20151560 20151697 -262041967 - MIR3 SINE MIR 0 208 69 183 369 15 0 chr1 20151714 20151779 -262041885 - L2 LINE L2 -31 3282 3217 285 151 0 0 chr1 20152701 20152754 -262040910 + G-rich Low_complexity Low_complexity 1 53 0 192 287 46 58 chr1 20152987 20153074 -262040590 - L2 LINE L2 -11 3261 3176 2223 116 0 0 chr1 20154012 20154322 -262039342 + AluSg SINE Alu 1 310 0 2057 105 45 0 chr1 20154340 20154626 -262039038 + AluSp SINE Alu 1 299 -14 454 230 206 6 chr1 20155111 20155276 -262038388 + MIR SINE MIR 15 212 -50 180 125 0 0 chr1 20155994 20156026 -262037638 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 242 209 0 81 chr1 20156034 20156120 -262037544 - L2 LINE L2 -1 3271 3193 703 181 102 14 chr1 20156167 20156355 -262037309 - MIR SINE MIR 0 262 59 200 260 11 97 chr1 20156420 20156547 -262037117 - MIR SINE MIR -71 137 59 280 315 75 27 chr1 20156711 20156857 -262036807 - MIR SINE MIR -55 155 1 2288 72 13 31 chr1 20157086 20157404 -262036260 + AluSp SINE Alu 1 312 -1 1849 118 52 0 chr1 20157902 20158248 -262035416 - AluSq SINE Alu 0 360 1 183 336 48 10 chr1 20158776 20158880 -262034784 + MIR SINE MIR 28 135 -127 244 184 61 0 chr1 20159633 20159682 -262033982 - L2 LINE L2 0 3313 3262 1902 147 7 0 chr1 20159768 20160068 -262033596 + AluSx SINE Alu 1 302 -10 387 356 75 16 chr1 20161564 20161906 -262031758 - L2 LINE L2 -1 3312 2866 363 44 0 0 chr1 20162109 20162154 -262031510 + (CACCAT)n Simple_repeat Simple_repeat 3 47 0 2073 122 0 0 chr1 20163085 20163401 -262030263 - AluSx SINE Alu 0 316 1 461 257 31 32 chr1 20163410 20163569 -262030095 - MIR SINE MIR -62 146 44 338 269 56 9 chr1 20163653 20163761 -262029903 + MIR SINE MIR 57 169 -93 762 253 72 16 chr1 20164271 20164575 -262029089 + MER113 DNA MER1_type? 11 331 -190 966 233 30 0 chr1 20164586 20164788 -262028876 - MER3 DNA MER1_type -1 208 1 2039 126 0 40 chr1 20164829 20165154 -262028510 + AluSx SINE Alu 1 312 0 263 295 42 21 chr1 20165175 20165270 -262028394 + L2 LINE L2 3133 3229 -43 198 268 0 0 chr1 20165988 20166044 -262027620 + L2 LINE L2 2928 2983 -289 232 303 128 28 chr1 20166302 20166411 -262027253 + L2 LINE L2 3153 3272 0 288 299 0 13 chr1 20166451 20166528 -262027136 + GA-rich Low_complexity Low_complexity 2 77 0 542 276 16 0 chr1 20167045 20167172 -262026492 - MIR3 SINE MIR -40 168 40 1689 176 7 3 chr1 20167195 20167479 -262026185 - AluJo SINE Alu -17 295 11 313 247 0 41 chr1 20167510 20167607 -262026057 - L1ME1 LINE L1 -6 6160 6068 227 337 0 0 chr1 20167735 20167818 -262025846 - L1ME1 LINE L1 -2037 5771 5689 254 278 0 9 chr1 20168371 20168470 -262025194 + GA-rich Low_complexity Low_complexity 2 101 -14 2225 109 0 0 chr1 20168470 20168774 -262024890 + AluSx SINE Alu 1 304 -8 254 278 0 9 chr1 20168774 20168789 -262024875 + GA-rich Low_complexity Low_complexity 101 115 0 253 404 40 15 chr1 20169456 20169654 -262024010 - MIR SINE MIR 0 262 60 2103 90 11 0 chr1 20170395 20170736 -262022928 + AluSp SINE Alu 6 349 0 387 288 144 13 chr1 20170860 20171013 -262022651 + MIR3 SINE MIR 20 192 -16 272 312 0 13 chr1 20171030 20171107 -262022557 + L3 LINE CR1 1413 1488 -89 232 299 217 37 chr1 20171269 20171486 -262022178 + MIR SINE MIR 7 262 0 421 277 189 0 chr1 20171545 20171693 -262021971 - L2 LINE L2 -3 3310 3135 2319 97 7 3 chr1 20172267 20172577 -262021087 - AluSq SINE Alu -2 311 1 579 272 47 87 chr1 20172577 20172745 -262020919 - MIR SINE MIR -14 248 92 3587 94 17 13 chr1 20172745 20173266 -262020398 + L1MA3 LINE L1 5782 6304 -1 579 272 47 87 chr1 20173266 20173351 -262020313 - MIR SINE MIR -170 92 5 192 361 31 0 chr1 20173513 20173610 -262020054 + MIR3 SINE MIR 91 190 -18 607 240 157 5 chr1 20173636 20173840 -262019824 - MIR SINE MIR -25 237 3 290 297 82 69 chr1 20173932 20174164 -262019500 + L2 LINE L2 3024 3258 -14 234 176 0 0 chr1 20174188 20174239 -262019425 + GA-rich Low_complexity Low_complexity 2 52 0 494 278 96 33 chr1 20174435 20174483 -262019181 + MER113 DNA MER1_type? 161 205 -316 293 0 0 26 chr1 20174483 20174521 -262019143 + (CA)n Simple_repeat Simple_repeat 2 38 0 494 278 96 33 chr1 20174521 20174742 -262018922 + MER113 DNA MER1_type? 205 447 -74 236 77 26 0 chr1 20175300 20175339 -262018325 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 341 208 160 0 chr1 20175567 20175673 -262017991 - L2 LINE L2 -237 3035 2913 571 226 24 71 chr1 20175753 20175775 -262017889 + MIR SINE MIR 28 49 -213 2406 51 3 3 chr1 20175775 20176071 -262017593 - AluY SINE Alu -15 296 1 571 226 24 71 chr1 20176071 20176216 -262017448 + MIR SINE MIR 49 187 -75 360 0 0 0 chr1 20176288 20176328 -262017336 + (TG)n Simple_repeat Simple_repeat 2 41 0 544 264 104 21 chr1 20176515 20176720 -262016944 + MIR SINE MIR 7 223 -39 194 331 8 79 chr1 20177224 20177351 -262016313 + MER5A DNA MER1_type 41 158 -31 * 332 272 37 7 chr1 20177251 20177385 -262016279 - MER5A DNA MER1_type -41 137 9 495 230 0 0 chr1 20177519 20177684 -262015980 + (TG)n Simple_repeat Simple_repeat 2 166 0 2150 89 3 35 chr1 20178261 20178576 -262015088 + AluSx SINE Alu 1 305 -7 436 314 64 19 chr1 20178751 20178907 -262014757 + MIR SINE MIR 6 168 -94 258 175 0 0 chr1 20179013 20179053 -262014611 - MIR SINE MIR -6 256 217 370 317 75 30 chr1 20180118 20180317 -262013347 + MIR SINE MIR 49 256 -6 806 176 59 59 chr1 20180399 20180549 -262013115 + MER58A DNA MER1_type 5 157 -2263 2173 132 3 0 chr1 20180549 20180859 -262012805 + AluSx SINE Alu 1 311 -1 806 176 59 59 chr1 20180859 20180912 -262012752 + MER58A DNA MER1_type 156 208 -16 662 299 31 21 chr1 20181026 20181220 -262012444 + MIR SINE MIR 59 254 -8 2029 114 0 63 chr1 20182661 20182993 -262010671 - AluSx SINE Alu -1 311 1 493 230 86 20 chr1 20183280 20183432 -262010232 - L2 LINE L2 -2 3311 3150 188 372 13 0 chr1 20183470 20183548 -262010116 - MIR SINE MIR 0 262 184 181 260 140 0 chr1 20183545 20183595 -262010069 - MIR SINE MIR -186 76 20 * 2291 107 0 16 chr1 20183618 20183935 -262009729 - AluSx SINE Alu 0 312 1 1801 149 4 0 chr1 20184488 20184769 -262008895 + AluJb SINE Alu 5 286 -26 229 265 20 0 chr1 20184981 20185030 -262008634 - L2 LINE L2 -86 3186 3137 189 248 19 124 chr1 20185354 20185459 -262008205 - MIR SINE MIR -74 134 41 191 111 0 0 chr1 20185840 20185870 -262007794 - MIR SINE MIR -110 152 124 249 292 0 0 chr1 20185895 20185960 -262007704 - L2 LINE L2 0 3272 3208 212 250 188 0 chr1 20185956 20186020 -262007644 - MIR SINE MIR -182 80 5 * 462 310 185 0 chr1 20186294 20186478 -262007186 - MIR SINE MIR -12 250 33 674 205 95 35 chr1 20187366 20187566 -262006098 + MIR SINE MIR 40 251 -11 2072 126 0 0 chr1 20189010 20189303 -262004361 + AluSx SINE Alu 1 293 -19 612 308 27 7 chr1 20190095 20190139 -262003525 + MIR SINE MIR 16 58 -204 2088 103 14 7 chr1 20190139 20190462 -262003202 + AluSx SINE Alu 1 312 0 612 308 27 7 chr1 20190462 20190651 -262003013 + MIR SINE MIR 58 252 -10 450 347 35 6 chr1 20190738 20190911 -262002753 + MIR3 SINE MIR 27 204 -4 299 253 62 84 chr1 20191324 20191502 -262002162 + L2 LINE L2 2914 3087 -185 556 303 6 22 chr1 20191589 20191767 -262001897 - MIR SINE MIR 0 262 88 648 322 75 5 chr1 20191783 20191997 -262001667 + MIR SINE MIR 2 230 -32 230 321 110 0 chr1 20192011 20192120 -262001544 - MIR SINE MIR -68 140 20 207 263 0 92 chr1 20192946 20193098 -262000566 + C-rich Low_complexity Low_complexity 4 141 0 204 40 0 0 chr1 20193247 20193272 -262000392 + (CCG)n Simple_repeat Simple_repeat 3 27 0 381 284 149 55 chr1 20193642 20193931 -261999733 + L2 LINE L2 2937 3252 -20 185 309 182 9 chr1 20193958 20194068 -261999596 - L2 LINE L2 -25 3288 3160 286 333 90 40 chr1 20194389 20194566 -261999098 + L3 LINE CR1 1347 1532 -45 261 311 66 25 chr1 20194585 20194707 -261998957 - MER5A DNA MER1_type -41 148 22 2229 81 7 3 chr1 20194854 20195150 -261998514 - AluSg SINE Alu -13 297 1 193 303 45 0 chr1 20195223 20195289 -261998375 - MIR3 SINE MIR -17 191 123 198 233 33 50 chr1 20196344 20196404 -261997260 + MER5A DNA MER1_type 130 188 -1 198 71 0 0 chr1 20196927 20196955 -261996709 + (GA)n Simple_repeat Simple_repeat 1 28 0 796 238 5 26 chr1 20198175 20198368 -261995296 + MIR SINE MIR 74 262 0 219 355 50 16 chr1 20199177 20199298 -261994366 - L2 LINE L2 -45 3227 3103 334 336 16 0 chr1 20200856 20200978 -261992686 + MIR SINE MIR 20 143 -119 244 270 0 0 chr1 20201024 20201087 -261992577 - HsTC2 DNA Tc2 -609 1289 1227 201 74 0 0 chr1 20201281 20201308 -261992356 - MIR SINE MIR -119 143 117 205 298 0 0 chr1 20201610 20201657 -261992007 + C-rich Low_complexity Low_complexity 1 47 0 351 167 0 0 chr1 20202190 20202256 -261991408 + (TG)n Simple_repeat Simple_repeat 2 67 0 327 25 0 0 chr1 20202350 20202390 -261991274 + (TG)n Simple_repeat Simple_repeat 2 41 0 258 196 20 0 chr1 20202633 20202684 -261990980 - L2 LINE L2 0 3313 3262 182 393 22 15 chr1 20202872 20203007 -261990657 - L3b LINE CR1 -150 1433 1298 420 271 28 11 chr1 20203300 20203477 -261990187 + (CA)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 20203579 20203621 -261990043 + (CA)n Simple_repeat Simple_repeat 1 42 0 383 296 115 35 chr1 20203703 20203880 -261989784 + MIR SINE MIR 25 211 -51 207 264 0 23 chr1 20204525 20204612 -261989052 + (TG)n Simple_repeat Simple_repeat 2 86 0 324 176 11 77 chr1 20204728 20204789 -261988875 - MER5B DNA MER1_type -1 177 122 2201 88 3 16 chr1 20204789 20205094 -261988570 + AluSp SINE Alu 1 301 -12 324 176 11 77 chr1 20205094 20205123 -261988541 - MER5B DNA MER1_type -56 122 93 216 239 0 0 chr1 20205106 20205152 -261988512 + MER5B DNA MER1_type 133 178 0 * 231 266 22 11 chr1 20205578 20205686 -261987978 + MIR SINE MIR 96 205 -57 663 237 54 16 chr1 20206302 20206488 -261987176 - MIR SINE MIR -4 258 66 248 238 12 48 chr1 20207092 20207176 -261986488 + G-rich Low_complexity Low_complexity 2 82 0 560 270 75 23 chr1 20207599 20207773 -261985891 + MIR SINE MIR 20 202 -60 869 237 197 15 chr1 20208244 20208569 -261985095 + L2 LINE L2 2926 3309 -4 347 303 25 17 chr1 20208572 20208691 -261984973 - L2 LINE L2 -3 3269 3150 200 203 51 17 chr1 20208687 20208746 -261984918 + L2 LINE L2 3249 3309 -4 * 245 240 32 96 chr1 20210069 20210194 -261983470 + MIR SINE MIR 80 196 -66 189 250 78 0 chr1 20210802 20210866 -261982798 + L2 LINE L2 3021 3089 -183 252 100 0 0 chr1 20211491 20211531 -261982133 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 239 333 140 0 chr1 20212198 20212291 -261981373 - MIR SINE MIR -65 143 38 1413 185 32 42 chr1 20212315 20212393 -261981271 - Charlie5 DNA MER1_type -8 2616 2539 2329 117 0 0 chr1 20212393 20212693 -261980971 + AluSx SINE Alu 1 300 -12 1413 185 32 42 chr1 20212693 20212992 -261980672 - Charlie5 DNA MER1_type -85 2539 2243 606 213 8 8 chr1 20213007 20213134 -261980530 - MER3 DNA MER1_type -82 127 48 243 365 0 0 chr1 20213658 20213762 -261979902 + (TG)n Simple_repeat Simple_repeat 1 104 0 204 380 23 12 chr1 20213817 20213988 -261979676 + (TATATG)n Simple_repeat Simple_repeat 2 174 0 285 235 0 51 chr1 20214046 20214144 -261979520 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 294 290 5 10 chr1 20214173 20214383 -261979281 + (TG)n Simple_repeat Simple_repeat 1 208 0 278 316 0 10 chr1 20214739 20214837 -261978827 + CT-rich Low_complexity Low_complexity 2 98 0 256 246 18 0 chr1 20215017 20215074 -261978590 + MIR3 SINE MIR 102 159 -49 294 276 133 0 chr1 20215367 20215465 -261978199 - MIR SINE MIR -62 146 36 186 256 0 0 chr1 20215668 20215707 -261977957 - L2 LINE L2 -12 3301 3263 * 311 255 88 0 chr1 20215703 20215805 -261977859 - MIR SINE MIR -72 190 80 369 286 87 32 chr1 20216645 20216830 -261976834 + MIR SINE MIR 68 262 0 3819 103 37 35 chr1 20216857 20217377 -261976287 + L1MA4A LINE L1 5643 6166 -137 2323 122 0 3 chr1 20217377 20217689 -261975975 + AluSx SINE Alu 1 311 -1 3819 103 37 35 chr1 20217689 20217817 -261975847 + L1MA4A LINE L1 6166 6292 -11 834 272 19 3 chr1 20218087 20218316 -261975348 + MIR SINE MIR 31 256 -6 2538 75 3 0 chr1 20218356 20218664 -261975000 - AluY SINE Alu 0 311 3 367 265 36 36 chr1 20219086 20219224 -261974440 - MIR SINE MIR -61 147 52 625 288 24 19 chr1 20219311 20219516 -261974148 - MIR SINE MIR -6 256 51 981 108 12 6 chr1 20220625 20220955 -261972709 + (TGGA)n Simple_repeat Simple_repeat 1 332 0 181 295 39 39 chr1 20223218 20223296 -261970368 - L3b LINE CR1 -135 1448 1371 23 33 0 0 chr1 20224006 20224036 -261969628 + AT_rich Low_complexity Low_complexity 1 30 0 221 212 30 0 chr1 20224863 20224929 -261968735 + (TG)n Simple_repeat Simple_repeat 2 69 0 299 327 10 10 chr1 20225178 20225279 -261968385 + L2 LINE L2 3169 3269 -3 944 146 21 0 chr1 20225497 20225641 -261968023 - FAM SINE Alu -15 170 24 997 194 44 9 chr1 20225668 20225895 -261967769 - LTR16A1 LTR ERVL -55 402 168 523 280 21 0 chr1 20225956 20226099 -261967565 - LTR16A1 LTR ERVL -311 146 1 293 290 80 14 chr1 20226502 20226640 -261967024 + MIR3 SINE MIR 38 184 -24 276 221 38 76 chr1 20226867 20226998 -261966666 - MLT1L LTR MaLR -385 126 1 209 187 69 0 chr1 20227475 20227540 -261966124 + MIR SINE MIR 75 112 -96 748 237 45 15 chr1 20227567 20227873 -261965791 - MLT1I LTR MaLR -29 380 38 249 264 150 36 chr1 20228053 20228220 -261965444 - MIR SINE MIR -12 250 65 389 341 63 10 chr1 20228542 20228747 -261964917 - MIR SINE MIR -45 217 2 457 219 0 44 chr1 20228832 20228946 -261964718 - MLT1H LTR MaLR -13 536 428 1555 259 56 52 chr1 20228946 20229537 -261964127 + MLT1E LTR MaLR 1 593 0 294 200 0 43 chr1 20229708 20229778 -261963886 - MLT1H LTR MaLR -396 153 87 595 228 60 27 chr1 20230316 20230500 -261963164 + MIR SINE MIR 18 207 -55 1166 220 152 28 chr1 20231097 20231696 -261961968 - L1MDb LINE L1 -3900 2640 1968 1419 187 15 18 chr1 20231703 20231976 -261961688 + MSTB LTR MaLR 155 426 0 258 294 0 0 chr1 20232156 20232241 -261961423 + MLT1I LTR MaLR 323 407 -2 623 152 19 0 chr1 20232317 20232422 -261961242 + L1MC1 LINE L1 6056 6162 -171 2494 140 29 14 chr1 20232422 20232837 -261960827 + MSTA LTR MaLR 1 421 -7 820 201 5 11 chr1 20232837 20233021 -261960643 + L1MC1 LINE L1 6151 6333 0 2159 72 19 0 chr1 20233022 20233285 -261960379 + AluY SINE Alu 36 303 -8 450 252 68 38 chr1 20233289 20233555 -261960109 - HAL1b LINE L1 -404 944 671 1122 220 51 57 chr1 20233574 20234065 -261959599 - L1M3b LINE L1 -4520 1951 1506 861 268 38 90 chr1 20234060 20234561 -261959103 - L1MDb LINE L1 -5160 1383 909 * 332 308 135 24 chr1 20234617 20234825 -261958839 - L1MDb LINE L1 -5598 932 702 2058 133 7 0 chr1 20235146 20235432 -261958232 + AluSx SINE Alu 1 288 -24 509 80 13 0 chr1 20235432 20235507 -261958157 + (GGA)n Simple_repeat Simple_repeat 1 76 0 2205 110 0 3 chr1 20235718 20236010 -261957654 - AluSg SINE Alu -12 298 8 2010 91 0 4 chr1 20236017 20236269 -261957395 - AluSg SINE Alu -10 300 50 435 253 58 58 chr1 20236621 20236733 -261956931 + MER5B DNA MER1_type 1 115 -63 1543 145 65 36 chr1 20236733 20237009 -261956655 - AluJb SINE Alu -25 287 4 435 253 58 58 chr1 20237009 20237070 -261956594 + MER5B DNA MER1_type 114 174 -4 1222 228 75 19 chr1 20237961 20238321 -261955343 - MER77 LTR ERV1 -11 594 215 354 271 0 0 chr1 20238338 20238423 -261955241 - MLT1I LTR MaLR -2 407 323 328 287 9 32 chr1 20238503 20238620 -261955044 - MLT1J LTR MaLR -231 199 73 453 332 73 0 chr1 20239295 20239500 -261954164 - MIR SINE MIR -25 237 18 475 245 44 25 chr1 20239537 20239696 -261953968 - L1MC5 LINE L1 -97 7864 7703 363 314 54 22 chr1 20239845 20240030 -261953634 + MIR SINE MIR 12 202 -60 680 254 42 0 chr1 20240071 20240236 -261953428 + MIR SINE MIR 74 245 -17 1167 152 18 42 chr1 20240381 20240598 -261953066 + MER20 DNA MER1_type 8 219 0 253 313 21 10 chr1 20241021 20241117 -261952547 + MIR SINE MIR 25 121 -141 192 158 0 0 chr1 20241206 20241244 -261952420 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 972 299 154 28 chr1 20241255 20241958 -261951706 - L2 LINE L2 -462 2852 2062 260 313 10 0 chr1 20242266 20242362 -261951302 + MIR SINE MIR 59 155 -107 392 280 48 8 chr1 20242630 20242706 -261950958 + MER5B DNA MER1_type 49 133 -45 333 68 0 0 chr1 20242706 20242750 -261950914 + (CAT)n Simple_repeat Simple_repeat 2 45 0 392 280 48 8 chr1 20242750 20242798 -261950866 + MER5B DNA MER1_type 133 178 0 341 294 15 22 chr1 20243060 20243196 -261950468 - MIR SINE MIR -50 212 78 197 196 71 0 chr1 20243268 20243324 -261950340 + L2 LINE L2 3213 3272 0 575 242 78 7 chr1 20243834 20243987 -261949677 - MER58B DNA MER1_type 0 341 178 2046 85 15 8 chr1 20243992 20244251 -261949413 - AluSx SINE Alu -51 261 1 274 314 48 24 chr1 20244644 20244768 -261948896 + MIR SINE MIR 20 146 -62 2487 137 23 30 chr1 20244872 20245256 -261948408 + MSTA LTR MaLR 1 383 -45 1948 162 0 3 chr1 20245256 20245552 -261948112 - AluSx SINE Alu -17 295 1 2487 137 23 30 chr1 20245552 20245597 -261948067 + MSTA LTR MaLR 383 427 -1 216 316 44 26 chr1 20246097 20246211 -261947453 + MIR SINE MIR 106 221 -41 184 197 0 106 chr1 20247032 20247098 -261946566 + MIR SINE MIR 78 136 -72 407 237 32 0 chr1 20247199 20247292 -261946372 + MIR SINE MIR 90 185 -77 337 272 136 0 chr1 20247444 20247547 -261946117 + MIR SINE MIR 30 146 -62 238 338 123 46 chr1 20248251 20248618 -261945046 - L2 LINE L2 -5 3267 2873 566 279 73 0 chr1 20248719 20248884 -261944780 - MIR SINE MIR -34 228 52 372 22 0 0 chr1 20248888 20248933 -261944731 + (TG)n Simple_repeat Simple_repeat 2 46 0 2243 123 0 0 chr1 20248934 20249235 -261944429 - AluSx SINE Alu -11 301 1 696 220 57 6 chr1 20249513 20249690 -261943974 - MER5A DNA MER1_type -3 186 1 190 250 100 0 chr1 20249764 20249824 -261943840 - MIR SINE MIR -102 160 95 463 284 130 25 chr1 20249887 20250242 -261943422 + L2 LINE L2 2921 3312 -1 327 306 83 23 chr1 20250667 20250883 -261942781 - L1MC4a LINE L1 -1777 6031 5803 298 341 81 0 chr1 20250967 20251172 -261942492 + MIR SINE MIR 34 256 -6 315 331 59 49 chr1 20251722 20252027 -261941637 - L1ME4a LINE L1 -221 5900 5593 629 241 74 5 chr1 20252602 20252824 -261940840 + MIR SINE MIR 10 248 -14 231 278 0 28 chr1 20253517 20253589 -261940075 + C-rich Low_complexity Low_complexity 5 74 0 404 310 47 18 chr1 20254780 20254951 -261938713 + MIR SINE MIR 12 187 -75 810 236 65 8 chr1 20255228 20255469 -261938195 - MIR SINE MIR -1 261 5 229 361 38 44 chr1 20255731 20255889 -261937775 + MIR3 SINE MIR 9 165 -43 195 42 0 0 chr1 20455971 20455995 -261737669 + (G)n Simple_repeat Simple_repeat 1 24 0 1328 53 0 25 chr1 20456152 20456686 -261736978 + (TCCA)n Simple_repeat Simple_repeat 1 520 0 202 338 54 0 chr1 20456690 20456764 -261736900 - L2 LINE L2 -4 3309 3232 270 162 126 18 chr1 20457775 20457860 -261735804 + MIR SINE MIR 21 106 -102 198 329 14 0 chr1 20458665 20458735 -261734929 + MER5A DNA MER1_type 119 189 0 * 519 244 16 19 chr1 20458735 20458876 -261734788 + MIR SINE MIR 31 173 -41 229 281 135 0 chr1 20458989 20459085 -261734579 + MIR SINE MIR 33 141 -67 434 317 217 7 chr1 20459480 20459780 -261733884 - L2 LINE L2 -1 3312 2950 353 248 117 29 chr1 20459942 20460079 -261733585 + MIR SINE MIR 58 206 -56 243 213 40 40 chr1 20460432 20460507 -261733157 + MIR SINE MIR 80 154 -108 1094 127 33 6 chr1 20460509 20460690 -261732974 + LTR23 LTR ERV1 4 189 -248 312 277 28 37 chr1 20461138 20461259 -261732405 + MIR3 SINE MIR 45 164 -44 499 286 132 5 chr1 20461833 20462053 -261731611 + MIR SINE MIR 9 256 -6 219 163 0 61 chr1 20462208 20462257 -261731407 + MIR SINE MIR 205 250 -12 409 186 39 49 chr1 20462296 20462398 -261731266 + MIR SINE MIR 62 162 -100 211 315 111 31 chr1 20463145 20463307 -261730357 + MIR3 SINE MIR 1 175 -33 235 261 54 45 chr1 20463452 20463563 -261730101 + MIR SINE MIR 59 170 -92 306 273 13 0 chr1 20463880 20463957 -261729707 - MER116 DNA Mariner 0 80 3 222 118 0 0 chr1 20465738 20465772 -261727892 + (TTC)n Simple_repeat Simple_repeat 3 36 0 684 225 9 99 chr1 20465865 20466087 -261727577 - MER20 DNA MER1_type -17 202 1 367 276 181 0 chr1 20466356 20466566 -261727098 - L1ME4a LINE L1 -1 6120 5873 309 279 58 0 chr1 20466571 20466657 -261727007 + L2 LINE L2 3222 3312 -1 399 273 43 29 chr1 20466782 20466921 -261726743 - MIR SINE MIR -55 207 67 324 223 68 29 chr1 20467426 20467529 -261726135 + MIR SINE MIR 80 186 -76 727 275 24 24 chr1 20467769 20467980 -261725684 + MIR SINE MIR 51 261 -1 201 39 0 0 chr1 20468162 20468188 -261725476 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1867 128 3 24 chr1 20468190 20468478 -261725186 - AluJb SINE Alu -30 282 1 271 254 49 16 chr1 20468574 20468696 -261724968 + MIR SINE MIR 21 146 -62 374 264 87 34 chr1 20468797 20468902 -261724762 + MIR SINE MIR 37 135 -127 1341 162 25 30 chr1 20468902 20468942 -261724722 - MER46A DNA MER2_type -2497 234 195 2061 129 0 10 chr1 20468942 20469251 -261724413 - AluSx SINE Alu -6 306 1 1341 162 25 30 chr1 20469251 20469445 -261724219 - MER46A DNA MER2_type -2536 195 1 374 264 87 34 chr1 20469445 20469546 -261724118 + MIR SINE MIR 135 253 -9 2224 111 0 0 chr1 20469595 20469901 -261723763 - AluSx SINE Alu -6 306 1 811 219 33 14 chr1 20469903 20470113 -261723551 + LTR23 LTR ERV1 224 437 0 2054 117 0 7 chr1 20470356 20470656 -261723008 + AluSx SINE Alu 1 298 -14 291 114 0 0 chr1 20470940 20470984 -261722680 + (T)n Simple_repeat Simple_repeat 1 44 0 218 291 65 83 chr1 20471855 20472085 -261721579 + L2 LINE L2 2575 2800 -514 431 276 17 0 chr1 20472805 20472921 -261720743 - MIR SINE MIR -105 157 40 199 266 101 13 chr1 20473633 20473712 -261719952 - MIR SINE MIR -88 174 89 373 245 9 28 chr1 20473941 20474047 -261719617 - MER53 DNA DNA -85 104 1 410 264 50 0 chr1 20474684 20474805 -261718859 + L3 LINE CR1 1344 1470 -107 297 279 165 14 chr1 20474873 20475030 -261718634 + MIR SINE MIR 3 180 -67 206 215 139 13 chr1 20475543 20475622 -261718042 - MIR3 SINE MIR -33 175 87 286 221 59 0 chr1 20475766 20475834 -261717830 - MIR SINE MIR -74 188 117 549 217 196 0 chr1 20476062 20476205 -261717459 + MER58C DNA MER1_type 45 215 0 633 238 20 7 chr1 20476353 20476504 -261717160 + MIR SINE MIR 21 173 -89 2132 110 7 3 chr1 20476504 20476813 -261716851 + AluSp SINE Alu 1 310 -3 1661 141 4 0 chr1 20476844 20477092 -261716572 + AluJo SINE Alu 1 249 -63 2301 94 3 0 chr1 20477412 20477720 -261715944 + AluSx SINE Alu 1 309 -3 2057 128 0 3 chr1 20478204 20478500 -261715164 - AluSx SINE Alu -17 295 1 203 79 26 0 chr1 20478728 20478766 -261714898 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 215 357 12 12 chr1 20479309 20479393 -261714271 - MIR SINE MIR -102 106 23 2314 71 0 0 chr1 20479974 20480268 -261713396 - AluY SINE Alu -17 294 1 2391 80 0 3 chr1 20480652 20480966 -261712698 - AluSq SINE Alu 0 313 1 2316 91 0 3 chr1 20481995 20482304 -261711360 - AluSc SINE Alu -1 308 1 492 288 92 38 chr1 20482494 20482841 -261710823 - L1ME LINE L1 -333 5788 5423 274 262 5 64 chr1 20483595 20483782 -261709882 + G-rich Low_complexity Low_complexity 5 180 0 187 263 66 53 chr1 20484682 20484758 -261708906 - MIR SINE MIR -55 153 77 287 167 15 0 chr1 20485738 20485804 -261707860 + C-rich Low_complexity Low_complexity 3 69 0 292 283 148 67 chr1 20486347 20486630 -261707034 + L2 LINE L2 2871 3176 -137 2325 90 3 0 chr1 20486701 20487012 -261706652 - AluSx SINE Alu 0 312 1 1730 147 39 7 chr1 20487012 20487298 -261706366 - AluJb SINE Alu -17 295 1 794 157 72 12 chr1 20487304 20487470 -261706194 - L1MA8 LINE L1 -1 6290 6115 1441 139 52 38 chr1 20487470 20487737 -261705927 - AluJo SINE Alu -3 309 39 2695 183 19 4 chr1 20487740 20488275 -261705389 - L1MA8 LINE L1 -161 6130 5588 210 270 11 67 chr1 20490131 20490220 -261703444 + MIR SINE MIR 60 143 -65 215 239 11 125 chr1 20490589 20490614 -261703050 + MIR SINE MIR 8 34 -228 1959 119 34 3 chr1 20490614 20490907 -261702757 + AluSx SINE Alu 1 302 -10 215 239 11 125 chr1 20490907 20490969 -261702695 + MIR SINE MIR 34 85 -177 2488 214 114 72 chr1 20491383 20491473 -261702191 + L1MC4a LINE L1 6523 6608 -1200 2322 100 0 0 chr1 20491473 20491782 -261701882 - AluSg SINE Alu -1 309 1 2488 214 114 72 chr1 20491782 20491905 -261701759 + L1MC4a LINE L1 6608 6724 -1084 232 162 0 0 chr1 20491905 20491942 -261701722 - Tigger2 DNA MER2_type 0 2718 2682 2488 214 114 72 chr1 20491942 20492245 -261701419 + L1MC4a LINE L1 6724 7013 -795 2244 92 0 29 chr1 20492245 20492560 -261701104 + AluSc SINE Alu 1 306 -3 2488 214 114 72 chr1 20492560 20493136 -261700528 + L1MC4a LINE L1 7013 7712 -96 2229 101 0 3 chr1 20493203 20493511 -261700153 + AluSg SINE Alu 1 307 -3 1772 164 3 20 chr1 20493586 20493884 -261699780 + AluJb SINE Alu 3 295 -17 187 402 27 36 chr1 20494373 20494485 -261699179 - L3b LINE CR1 -44 1539 1429 527 331 12 0 chr1 20494626 20494795 -261698869 - MIR SINE MIR -3 259 89 809 228 6 0 chr1 20494908 20495070 -261698594 - AluSg/x SINE Alu -20 290 128 2200 105 7 0 chr1 20495072 20495376 -261698288 - AluSq SINE Alu -7 306 1 250 118 0 118 chr1 20495386 20495454 -261698210 - MER69 DNA AcHobo -16 2510 2451 1578 142 91 11 chr1 20495465 20495485 -261698179 - AluSg SINE Alu -4 306 289 686 53 11 0 chr1 20495485 20495580 -261698084 + (TTCC)n Simple_repeat Simple_repeat 3 98 0 1578 142 91 11 chr1 20495580 20495833 -261697831 - AluSg SINE Alu -21 289 11 467 246 26 0 chr1 20495842 20495956 -261697708 - MER69 DNA AcHobo -1075 151 35 406 301 6 26 chr1 20496191 20496347 -261697317 - MER5A DNA MER1_type -23 166 14 215 314 24 32 chr1 20496632 20496756 -261696908 - L2 LINE L2 -165 3107 2985 * 592 277 50 84 chr1 20496742 20497063 -261696601 - L2 LINE L2 -45 3227 2918 1545 231 124 45 chr1 20497131 20497680 -261695984 + MLT1G1 LTR MaLR 4 595 0 580 352 120 6 chr1 20497815 20498156 -261695508 - L3 LINE CR1 -2 1575 1196 352 309 161 0 chr1 20498197 20498365 -261695299 + MIR SINE MIR 67 261 -1 851 54 9 0 chr1 20499018 20499129 -261694535 - L1PA4 LINE L1 0 6155 6044 297 304 109 27 chr1 20499642 20499826 -261693838 + MLT1K LTR MaLR 150 348 -240 1451 178 4 11 chr1 20499908 20500183 -261693481 - AluJo SINE Alu 0 312 40 229 294 15 0 chr1 20500330 20500398 -261693266 - MIR3 SINE MIR -50 158 90 1814 157 3 26 chr1 20501714 20502019 -261691645 - AluJo SINE Alu -14 298 1 319 297 169 7 chr1 20502027 20502175 -261691489 + Charlie8 DNA MER1_type 83 254 -2163 1923 138 7 0 chr1 20502369 20502660 -261691004 - AluSx SINE Alu -19 293 1 508 325 31 0 chr1 20502777 20502940 -261690724 - MIR SINE MIR -54 208 41 291 287 139 0 chr1 20503008 20503109 -261690555 - MER63A DNA MER1_type 0 210 96 204 298 35 0 chr1 20503284 20503341 -261690323 - MIR3 SINE MIR -41 167 109 1967 137 0 20 chr1 20503792 20504098 -261689566 - AluSx SINE Alu -12 300 1 2302 50 7 7 chr1 20504502 20504833 -261688831 + AluY SINE Alu 1 311 0 253 270 125 46 chr1 20505547 20505699 -261687965 + MIR3 SINE MIR 20 183 -25 272 176 20 0 chr1 20505712 20505763 -261687901 - MER81 DNA DNA -62 52 1 469 307 55 78 chr1 20505800 20506018 -261687646 + MIR SINE MIR 39 251 -11 386 313 39 12 chr1 20506040 20506247 -261687417 + MIR SINE MIR 34 250 -12 2179 99 0 0 chr1 20506794 20507078 -261686586 + AluSx SINE Alu 1 284 -28 1130 100 0 0 chr1 20506938 20507079 -261686585 + AluSg/x SINE Alu 145 331 0 415 0 0 0 chr1 20507079 20507125 -261686539 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 259 235 37 37 chr1 20507391 20507472 -261686192 + MIR SINE MIR 93 173 -89 394 285 109 18 chr1 20507566 20507731 -261685933 - MIR SINE MIR -78 184 5 342 115 0 0 chr1 20508393 20508445 -261685219 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 216 247 290 0 chr1 20508519 20508612 -261685052 - L2 LINE L2 -1 3271 3152 964 115 0 8 chr1 20508735 20508865 -261684799 + FLAM_C SINE Alu 1 129 -14 2030 122 43 9 chr1 20508865 20509194 -261684470 - THE1C LTR MaLR -35 340 1 213 338 0 0 chr1 20509491 20509559 -261684105 - MIR SINE MIR -113 149 82 237 314 73 16 chr1 20509652 20509776 -261683888 - L2 LINE L2 -20 3293 3163 216 0 0 0 chr1 20512554 20512578 -261681086 + (CCTG)n Simple_repeat Simple_repeat 2 25 0 288 0 0 0 chr1 20512913 20512945 -261680719 + (CA)n Simple_repeat Simple_repeat 2 33 0 367 256 35 0 chr1 20514961 20515047 -261678617 - MIR SINE MIR -82 180 92 1458 204 20 0 chr1 20516287 20516581 -261677083 - AluSq SINE Alu -13 300 1 689 242 112 0 chr1 20516673 20516896 -261676768 + MER90 LTR ERV1 328 575 0 265 304 152 8 chr1 20517094 20517219 -261676445 - MIR SINE MIR -106 156 14 2157 111 0 26 chr1 20517762 20518068 -261675596 - AluSx SINE Alu -14 298 1 397 221 143 55 chr1 20518566 20518783 -261674881 + MER102a DNA MER1_type 64 299 -31 356 159 0 79 chr1 20519844 20519907 -261673757 - AluSg/x SINE Alu -111 189 135 306 261 99 18 chr1 20519908 20520019 -261673645 + MLT1K LTR MaLR 433 552 -36 830 216 111 11 chr1 20520554 20520795 -261672869 + MIR SINE MIR 1 262 0 317 209 76 38 chr1 20520787 20520892 -261672772 - MIR SINE MIR -107 155 47 * 228 250 0 115 chr1 20521039 20521069 -261672595 - MIR3 SINE MIR -28 180 148 1128 197 99 3 chr1 20521069 20521363 -261672301 + MER33 DNA MER1_type 3 324 0 228 250 0 115 chr1 20521363 20521436 -261672228 - MIR3 SINE MIR -60 148 89 2433 98 0 0 chr1 20521836 20522143 -261671521 + AluSq SINE Alu 1 307 -6 182 118 29 0 chr1 20522167 20522201 -261671463 + (CA)n Simple_repeat Simple_repeat 1 35 0 628 273 49 0 chr1 20522201 20522384 -261671280 + MER112 DNA MER1_type 67 258 -2 210 313 195 0 chr1 20522420 20522548 -261671116 + MIR SINE MIR 110 262 0 1449 167 0 13 chr1 20522854 20523081 -261670583 + AluJo SINE Alu 34 257 -55 445 305 33 33 chr1 20523191 20523401 -261670263 + MIR SINE MIR 47 256 -6 244 290 0 0 chr1 20523463 20523525 -261670139 + L3 LINE CR1 1416 1477 -100 203 204 0 0 chr1 20523556 20523600 -261670064 + L2 LINE L2 3270 3313 0 1889 156 14 7 chr1 20523682 20523971 -261669693 - AluJb SINE Alu -14 298 8 585 214 84 8 chr1 20523971 20524102 -261669562 - MER5B DNA MER1_type -34 144 4 1116 154 42 0 chr1 20524145 20524359 -261669305 + L1MA8 LINE L1 6067 6289 -2 182 256 0 0 chr1 20524659 20524698 -261668966 - L2 LINE L2 -86 3186 3148 227 209 93 23 chr1 20525077 20525163 -261668501 + L2 LINE L2 3161 3252 -61 207 264 157 25 chr1 20526164 20526285 -261667379 + L2 LINE L2 2533 2669 -645 1761 140 0 51 chr1 20526420 20526713 -261666951 - AluJo SINE Alu -14 298 21 622 228 74 0 chr1 20527360 20527522 -261666142 - MER45A DNA AcHobo 0 178 5 1326 217 101 42 chr1 20527526 20527960 -261665704 - MLT1C LTR MaLR -6 461 2 227 257 87 55 chr1 20529355 20529573 -261664091 - L2 LINE L2 -182 3090 2866 231 311 51 20 chr1 20529610 20529806 -261663858 - L2 LINE L2 -557 2757 2556 371 289 31 8 chr1 20530322 20530450 -261663214 + MIR SINE MIR 15 145 -117 2117 129 7 0 chr1 20530981 20531268 -261662396 + AluSx SINE Alu 2 290 -22 263 321 0 0 chr1 20531597 20531678 -261661986 + L1ME4a LINE L1 5967 6047 -74 785 227 64 10 chr1 20531707 20531910 -261661754 + MER58C DNA MER1_type 2 215 0 927 174 14 7 chr1 20532016 20532424 -261661240 + CT-rich Low_complexity Low_complexity 1 410 0 1904 131 7 4 chr1 20532447 20532722 -261660942 - AluSx SINE Alu -23 289 14 439 188 19 32 chr1 20532782 20532936 -261660728 + CT-rich Low_complexity Low_complexity 4 155 0 202 180 67 11 chr1 20533403 20533492 -261660172 + (CAGG)n Simple_repeat Simple_repeat 3 96 0 550 221 210 10 chr1 20533892 20534087 -261659577 + MIR SINE MIR 23 256 -6 3305 210 17 31 chr1 20535109 20535243 -261658421 - L1ME LINE L1 -2023 4621 4487 2058 126 10 26 chr1 20535243 20535553 -261658111 - AluSx SINE Alu -7 305 1 3305 210 17 31 chr1 20535553 20536231 -261657433 - L1ME LINE L1 -2157 4487 3820 446 199 68 7 chr1 20536230 20536376 -261657288 - L1MA10 LINE L1 0 6334 6180 * 2426 100 10 0 chr1 20536427 20536737 -261656927 + AluSp SINE Alu 1 313 0 426 251 72 0 chr1 20536749 20536916 -261656748 - L1MEc LINE L1 -5410 986 808 1862 107 23 8 chr1 20536929 20537192 -261656472 + AluSq SINE Alu 21 287 -26 319 26 0 0 chr1 20537220 20537259 -261656405 - MER4D LTR ERV1 -74 798 760 2915 238 59 31 chr1 20537260 20537872 -261655792 - L1MEc LINE L1 -5571 825 185 2194 138 3 0 chr1 20537872 20538176 -261655488 - AluSx SINE Alu -7 305 1 2915 238 59 31 chr1 20538176 20538339 -261655325 - L1MEc LINE L1 -6211 185 28 1503 217 43 20 chr1 20538328 20538835 -261654829 - L1ME LINE L1 -2806 3838 3320 * 414 250 74 0 chr1 20538836 20538984 -261654680 - L1ME LINE L1 -3446 3198 3040 1284 258 82 59 chr1 20538985 20539863 -261653801 - L1ME LINE L1 -3661 2983 2127 2030 122 0 25 chr1 20539863 20540142 -261653522 - AluSx SINE Alu -40 272 1 1284 258 82 59 chr1 20540142 20540325 -261653339 - L1ME LINE L1 -4517 2127 1950 1772 95 4 0 chr1 20540325 20540556 -261653108 - AluSg/x SINE Alu 0 310 79 1284 258 82 59 chr1 20540556 20540805 -261652859 - L1ME LINE L1 -4694 1950 1679 293 214 30 42 chr1 20541149 20541278 -261652386 - L1ME LINE L1 -5931 703 40 22 0 0 0 chr1 20541330 20541352 -261652312 + AT_rich Low_complexity Low_complexity 1 22 0 924 105 8 0 chr1 20541524 20541648 -261652016 + AluY SINE Alu 1 125 -186 741 143 8 8 chr1 20541685 20541804 -261651860 - L1MB3 LINE L1 -165 6018 5897 1900 152 40 0 chr1 20541804 20542100 -261651564 - AluJb SINE Alu -4 308 1 351 55 36 0 chr1 20542114 20542169 -261651495 - L1PA8 LINE L1 -2 6170 6114 2292 110 0 0 chr1 20542172 20542599 -261651065 - AluSg SINE Alu 0 427 1 1886 220 23 25 chr1 20542602 20543083 -261650581 - L1M4 LINE L1 -816 5330 4851 * 6206 73 25 3 chr1 20543081 20543948 -261649716 + L1PA13 LINE L1 5259 6144 -19 1318 216 18 0 chr1 20543967 20544250 -261649414 - L1M4 LINE L1 -1286 4860 4573 421 253 34 28 chr1 20544306 20544441 -261649223 - L1ME4a LINE L1 -254 5867 5729 2145 120 0 41 chr1 20544441 20544757 -261648907 - AluSx SINE Alu -9 303 1 421 253 34 28 chr1 20544757 20544799 -261648865 - L1ME4a LINE L1 -392 5729 5689 186 343 79 21 chr1 20544879 20544897 -261648767 - MIR3 SINE MIR -30 178 162 323 127 155 28 chr1 20544897 20544968 -261648696 + MADE1 DNA Mariner 1 80 0 186 343 79 21 chr1 20544968 20545089 -261648575 - MIR3 SINE MIR -46 162 31 * 271 254 0 14 chr1 20545055 20545126 -261648538 + MIR SINE MIR 45 114 -148 1632 128 110 11 chr1 20545259 20545541 -261648123 - AluJb SINE Alu -2 310 1 25 90 0 0 chr1 20545576 20545643 -261648021 + AT_rich Low_complexity Low_complexity 1 67 0 2716 180 64 46 chr1 20545768 20546423 -261647241 + LTR65 LTR ERV1 2 668 -1 2472 74 0 3 chr1 20546428 20546726 -261646938 - AluSc SINE Alu -12 297 1 1005 164 11 11 chr1 20546802 20546985 -261646679 - MER5A DNA MER1_type -6 183 1 194 337 71 0 chr1 20547004 20547102 -261646562 + MIR SINE MIR 158 262 0 1942 167 3 3 chr1 20547314 20547619 -261646045 + AluJb SINE Alu 1 305 -7 719 109 0 0 chr1 20547714 20547815 -261645849 - AluSq/x SINE Alu -176 137 37 575 141 0 8 chr1 20547957 20548181 -261645483 - AluJb SINE Alu -15 297 1 332 329 100 0 chr1 20548972 20549142 -261644522 - MIR SINE MIR -45 217 31 2351 104 0 0 chr1 20549502 20549801 -261643863 - AluSc SINE Alu -10 299 1 256 339 118 0 chr1 20550019 20550146 -261643518 - L2 LINE L2 -19 3253 3112 2172 101 3 14 chr1 20550162 20550459 -261643205 + AluSq SINE Alu 1 294 -19 255 250 0 0 chr1 20551395 20551463 -261642201 + (TG)n Simple_repeat Simple_repeat 1 68 0 188 366 11 11 chr1 20551463 20551556 -261642108 + L2 LINE L2 3180 3272 0 319 274 17 34 chr1 20551598 20551715 -261641949 - MIR SINE MIR -62 146 32 345 244 56 16 chr1 20552766 20552911 -261640753 - MIR SINE MIR -58 150 31 558 284 88 0 chr1 20553339 20553543 -261640121 + MIR SINE MIR 35 256 -6 374 325 48 18 chr1 20553586 20553752 -261639912 + MIR SINE MIR 31 201 -61 343 207 37 0 chr1 20553795 20553877 -261639787 - MER5A DNA MER1_type -96 93 9 2382 98 3 0 chr1 20554122 20554417 -261639247 + AluSg SINE Alu 1 296 -14 309 93 19 0 chr1 20554445 20554499 -261639165 + MADE1 DNA Mariner 26 80 0 506 243 9 9 chr1 20555638 20555749 -261637915 + MER81 DNA DNA 3 113 -1 294 256 225 16 chr1 20555750 20555879 -261637785 + MIR SINE MIR 104 259 -3 805 237 27 5 chr1 20556041 20556227 -261637437 + MIR3 SINE MIR 12 201 -7 225 210 0 0 chr1 20556485 20556547 -261637117 + (TTCA)n Simple_repeat Simple_repeat 2 63 0 644 209 30 0 chr1 20556559 20556693 -261636971 + MIR SINE MIR 1 138 -124 183 268 71 0 chr1 20556745 20556801 -261636863 - L2 LINE L2 -1 3271 3212 2158 133 33 25 chr1 20557147 20557508 -261636156 - THE1B LTR MaLR 0 364 1 337 194 24 40 chr1 20557644 20557768 -261635896 - Charlie7 DNA MER1_type -60 2552 2431 1544 148 0 29 chr1 20557774 20558017 -261635647 + AluJo SINE Alu 1 236 -76 563 191 86 0 chr1 20558300 20558405 -261635259 + MER81 DNA DNA 1 114 0 2055 99 67 3 chr1 20558456 20558740 -261634924 + AluSg SINE Alu 9 310 0 2585 233 23 11 chr1 20559661 20560490 -261633174 - L1MEc LINE L1 -3372 2843 2038 867 166 0 0 chr1 20560502 20560673 -261632991 + AluJb SINE Alu 147 317 0 1679 252 94 59 chr1 20560724 20561354 -261632310 - MLT2F LTR ERVL -2 661 10 2747 274 65 24 chr1 20561373 20561913 -261631751 - L1MEc LINE L1 -4407 1989 1472 1868 68 0 0 chr1 20561913 20562134 -261631530 + AluY SINE Alu 1 221 -90 2747 274 65 24 chr1 20562134 20562722 -261630942 - L1MEc LINE L1 -4924 1472 815 461 217 0 58 chr1 20563215 20563335 -261630329 + MER3 DNA MER1_type 1 113 -96 2818 119 24 32 chr1 20563498 20563803 -261629861 - LTR46 LTR ERV1 -2 458 157 2561 54 0 0 chr1 20563803 20564097 -261629567 - AluY SINE Alu -17 294 1 2818 119 24 32 chr1 20564097 20564253 -261629411 - LTR46 LTR ERV1 -303 157 1 520 189 57 25 chr1 20564507 20564629 -261629035 - MIR SINE MIR -116 146 21 267 244 88 44 chr1 20566503 20566663 -261627001 + L2 LINE L2 2925 3091 -181 1002 73 0 0 chr1 20567107 20567243 -261626421 + (TTC)n Simple_repeat Simple_repeat 2 137 0 864 144 0 0 chr1 20567245 20567363 -261626301 - FLAM_C SINE Alu -15 118 1 961 299 34 44 chr1 20567412 20567828 -261625836 - L1MEc LINE L1 -5867 529 117 2185 127 3 13 chr1 20567828 20568142 -261625522 - AluSq SINE Alu -2 311 1 961 299 34 44 chr1 20568142 20568224 -261625440 - L1MEc LINE L1 -6279 117 36 268 288 250 8 chr1 20568870 20569002 -261624662 + MIR3 SINE MIR 24 187 -21 457 232 36 11 chr1 20569980 20570108 -261623556 + MIR SINE MIR 35 166 -58 231 203 0 0 chr1 20570356 20570420 -261623244 + (TTCA)n Simple_repeat Simple_repeat 2 65 0 251 242 16 0 chr1 20570420 20570482 -261623182 - L2 LINE L2 0 3313 3251 447 240 32 32 chr1 20570639 20570764 -261622900 + MIR SINE MIR 65 189 -73 715 239 143 0 chr1 20570826 20571035 -261622629 + MIR SINE MIR 16 254 -8 180 0 0 0 chr1 20571648 20571668 -261621996 + (GGA)n Simple_repeat Simple_repeat 1 20 0 180 125 0 0 chr1 20571900 20571932 -261621732 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 311 288 163 20 chr1 20571934 20572087 -261621577 - L2 LINE L2 -2 3270 3096 2105 135 0 0 chr1 20572274 20572563 -261621101 + AluSx SINE Alu 1 289 -23 235 261 0 0 chr1 20572643 20572689 -261620975 - L2 LINE L2 -205 3067 3022 * 405 291 69 46 chr1 20572685 20572860 -261620804 - L2 LINE L2 0 3313 3135 204 265 166 81 chr1 20572871 20573082 -261620582 - L2 LINE L2 -338 2976 2748 2181 143 10 0 chr1 20573082 20573389 -261620275 - AluSx SINE Alu -2 310 1 402 318 82 64 chr1 20573405 20573625 -261620039 - L1ME2 LINE L1 -227 5937 5714 930 265 41 18 chr1 20573633 20574039 -261619625 - L1ME2 LINE L1 -526 5638 5225 2174 222 26 129 chr1 20574052 20575044 -261618620 - L2 LINE L2 -566 2748 1859 853 248 59 21 chr1 20575127 20575413 -261618251 - MLT1K LTR MaLR -160 428 132 2290 90 3 19 chr1 20575651 20575962 -261617702 - AluSg SINE Alu -4 306 1 836 171 131 9 chr1 20575963 20576185 -261617479 - Charlie5 DNA MER1_type -19 2593 2345 1264 162 25 0 chr1 20576189 20576393 -261617271 - AluJo SINE Alu -18 294 86 417 204 0 11 chr1 20576394 20576487 -261617177 - Charlie5 DNA MER1_type -264 2348 2257 2265 118 0 3 chr1 20576487 20576783 -261616881 + AluSx SINE Alu 1 295 -17 420 178 198 0 chr1 20576810 20576911 -261616753 - MER3 DNA MER1_type -41 168 48 300 269 134 0 chr1 20576918 20577052 -261616612 - MIR3 SINE MIR -54 154 3 369 300 33 33 chr1 20577252 20577372 -261616292 - L2 LINE L2 -9 3263 3144 686 229 45 0 chr1 20577853 20578010 -261615654 - MER45A DNA AcHobo -14 164 1 192 275 66 33 chr1 20578106 20578197 -261615467 - MIR SINE MIR -51 211 118 2214 130 3 3 chr1 20578331 20578797 -261614867 - AluSx SINE Alu 0 466 1 510 57 0 0 chr1 20579316 20579386 -261614278 + (TTCC)n Simple_repeat Simple_repeat 2 71 0 764 290 69 54 chr1 20579394 20579801 -261613863 - L2 LINE L2 -21 3251 2839 314 305 122 46 chr1 20579987 20580089 -261613575 - L1ME4a LINE L1 -21 6100 6007 1879 146 7 40 chr1 20580089 20580229 -261613435 + AluJb SINE Alu 1 144 -168 2027 115 4 4 chr1 20580229 20580532 -261613132 + AluSx SINE Alu 6 308 0 1879 146 7 40 chr1 20580532 20580691 -261612973 + AluJb SINE Alu 144 291 -21 314 305 122 46 chr1 20580691 20581089 -261612575 - L1ME4a LINE L1 -114 6007 5562 243 0 0 0 chr1 20581485 20581512 -261612152 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1765 118 11 63 chr1 20581515 20581802 -261611862 - AluJb SINE Alu -32 280 9 423 0 0 0 chr1 20582284 20582331 -261611333 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1005 271 67 59 chr1 20582525 20582713 -261610951 - L1ME2 LINE L1 -220 5933 5748 1931 171 0 3 chr1 20582713 20583018 -261610646 - AluJo SINE Alu -8 304 1 1005 271 67 59 chr1 20583018 20583644 -261610020 - L1ME2 LINE L1 -405 5748 5139 2066 129 0 4 chr1 20583644 20583922 -261609742 - AluSc SINE Alu -32 277 1 1005 271 67 59 chr1 20583922 20584518 -261609146 - L1ME2 LINE L1 -1014 5139 4549 432 304 50 9 chr1 20584551 20584905 -261608759 - L1ME2 LINE L1 -877 1613 1356 657 159 8 0 chr1 20584907 20585212 -261608452 + CT-rich Low_complexity Low_complexity 1 180 0 1788 186 3 3 chr1 20585212 20585523 -261608141 - AluJb SINE Alu 0 616 1 328 243 0 47 chr1 20585600 20585694 -261607970 - L1ME2 LINE L1 -4875 1244 1154 1731 243 25 45 chr1 20585694 20586209 -261607455 - MLT1D LTR MaLR 0 505 1 328 243 0 47 chr1 20586209 20586221 -261607443 - L1ME2 LINE L1 -4965 1154 1143 711 263 31 8 chr1 20586242 20586497 -261607167 - L1ME2 LINE L1 -4962 1157 897 1211 242 134 40 chr1 20586497 20586591 -261607073 - L2 LINE L2 -1548 1766 1682 2741 110 3 0 chr1 20586591 20586964 -261606700 - THE1C LTR MaLR -1 374 1 1211 242 134 40 chr1 20586964 20587348 -261606316 - L2 LINE L2 -1632 1682 1243 1391 94 0 0 chr1 20587386 20587556 -261606108 + AluSq SINE Alu 2 171 -142 437 153 0 0 chr1 20587556 20587645 -261606019 + AluS SINE Alu 223 311 0 322 290 164 45 chr1 20587760 20588157 -261605507 + L2 LINE L2 2827 3270 -2 3320 172 72 61 chr1 20588706 20589305 -261604359 + L1MB7 LINE L1 5295 5907 -277 2563 125 28 39 chr1 20589305 20589736 -261603928 + MSTB LTR MaLR 1 426 0 3320 172 72 61 chr1 20589736 20589986 -261603678 + L1MB7 LINE L1 5907 6153 -31 2339 100 7 0 chr1 20590111 20590410 -261603254 - AluSx SINE Alu -11 301 1 213 240 0 0 chr1 20590424 20590474 -261603190 + A-rich Low_complexity Low_complexity 1 50 0 260 255 92 20 chr1 20590474 20590572 -261603092 + MIR SINE MIR 137 241 -21 420 232 286 69 chr1 20590572 20590921 -261602743 + LTR16C LTR ERVL 1 425 -66 370 106 16 0 chr1 20590938 20590999 -261602665 - AluSq/x SINE Alu -191 111 66 2020 136 0 0 chr1 20591315 20591595 -261602069 + AluJb SINE Alu 1 280 -32 213 39 0 0 chr1 20591597 20591623 -261602041 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1862 152 12 24 chr1 20591654 20591983 -261601681 - MER44D DNA MER2_type -8 601 7 585 234 123 18 chr1 20591989 20592160 -261601504 - MIR SINE MIR -27 235 47 198 167 0 0 chr1 20592547 20592583 -261601081 + CT-rich Low_complexity Low_complexity 2 37 0 2014 137 3 37 chr1 20592585 20592906 -261600758 - AluSx SINE Alu -2 310 1 214 357 0 0 chr1 20593091 20593147 -261600517 - L2 LINE L2 -12 3260 3205 755 275 90 5 chr1 20593256 20593478 -261600186 - MIR SINE MIR -1 261 21 273 261 65 11 chr1 20593585 20593677 -261599987 - L2 LINE L2 -243 3029 2933 666 174 0 0 chr1 20593989 20594110 -261599554 + FLAM_A SINE Alu 22 142 0 539 234 7 35 chr1 20594241 20594382 -261599282 + MIR SINE MIR 47 183 -79 805 240 132 36 chr1 20594394 20594441 -261599223 + MER113 DNA MER1_type? 24 65 -456 1491 184 20 65 chr1 20594441 20594653 -261599011 - MER58B DNA MER1_type -2079 341 121 1755 194 3 0 chr1 20594653 20594946 -261598718 - AluJo SINE Alu -18 294 1 1491 184 20 65 chr1 20594946 20595006 -261598658 - MER58B DNA MER1_type -2299 121 86 2308 109 0 0 chr1 20595006 20595299 -261598365 - AluSc SINE Alu -16 293 1 1491 184 20 65 chr1 20595299 20595378 -261598286 - MER58B DNA MER1_type -2334 86 5 805 240 132 36 chr1 20595378 20595506 -261598158 + MER113 DNA MER1_type? 65 179 -342 2374 92 0 0 chr1 20595506 20595799 -261597865 + AluSx SINE Alu 1 293 -19 805 240 132 36 chr1 20595799 20596038 -261597626 + MER113 DNA MER1_type? 179 479 -42 254 198 5 95 chr1 20596559 20596669 -261596995 + MIR SINE MIR 112 205 -3 239 321 60 0 chr1 20596740 20596824 -261596840 + MER102b DNA MER1_type 1 89 -252 1936 169 10 0 chr1 20597005 20597300 -261596364 - AluJo SINE Alu -14 298 1 24 0 0 0 chr1 20597305 20597329 -261596335 + AT_rich Low_complexity Low_complexity 1 24 0 2253 225 96 20 chr1 20597404 20598017 -261595647 - MER21B LTR ERV1 -111 752 93 26 0 0 0 chr1 20598075 20598101 -261595563 + AT_rich Low_complexity Low_complexity 1 26 0 354 186 0 147 chr1 20598110 20598239 -261595425 + MER102b DNA MER1_type 232 341 0 2052 122 148 16 chr1 20598305 20598683 -261594981 - MSTA LTR MaLR 0 428 1 341 254 15 181 chr1 20598691 20598791 -261594873 - MIR3 SINE MIR -3 259 227 2523 59 0 40 chr1 20598791 20599114 -261594550 + AluY SINE Alu 1 310 -1 341 254 15 181 chr1 20599114 20599273 -261594391 - MIR3 SINE MIR -35 227 43 340 314 38 0 chr1 20599394 20599499 -261594165 + MIR SINE MIR 88 196 -66 223 218 36 0 chr1 20599601 20599656 -261594008 + L2 LINE L2 3005 3061 -211 444 181 35 0 chr1 20599789 20599881 -261593783 - MIR SINE MIR -61 147 98 417 291 179 0 chr1 20600002 20600198 -261593466 + MIR SINE MIR 32 262 0 283 279 36 9 chr1 20600454 20600565 -261593099 + MIR SINE MIR 120 233 -29 267 243 6 0 chr1 20600830 20600901 -261592763 - L1ME LINE L1 -367 5803 5731 338 331 37 0 chr1 20601590 20601726 -261591938 + MIR SINE MIR 89 229 -33 444 228 79 24 chr1 20602013 20602140 -261591524 - MIR SINE MIR -21 241 108 1840 121 26 0 chr1 20602189 20602454 -261591210 + AluSx SINE Alu 1 272 -40 183 42 0 0 chr1 20602466 20602490 -261591174 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1746 236 87 45 chr1 20602791 20603457 -261590207 + L1ME3 LINE L1 5448 6141 -21 429 279 49 8 chr1 20603808 20603930 -261589734 + MIR3 SINE MIR 15 141 -67 214 273 0 18 chr1 20604138 20604193 -261589471 + MIR SINE MIR 208 261 -1 622 278 51 17 chr1 20604197 20604373 -261589291 - MIR SINE MIR -21 241 60 352 247 31 80 chr1 20605109 20605208 -261588456 - MIR SINE MIR -1 261 159 1973 144 7 23 chr1 20605208 20605514 -261588150 - AluJo SINE Alu -11 301 1 1524 157 68 25 chr1 20605519 20605799 -261587865 - AluSx SINE Alu -20 292 1 352 247 31 80 chr1 20605799 20605855 -261587809 - MIR SINE MIR -107 155 108 1144 189 183 6 chr1 20605894 20606206 -261587458 + L1MB8 LINE L1 5812 6178 0 311 241 54 62 chr1 20606293 20606405 -261587259 - L2 LINE L2 0 3313 3203 277 190 47 36 chr1 20606699 20606803 -261586861 - MIR SINE MIR -60 202 97 305 317 49 16 chr1 20607152 20607275 -261586389 + MIR3 SINE MIR 35 161 -47 393 194 130 74 chr1 20607333 20607441 -261586223 - MER81 DNA DNA 0 114 1 1518 199 87 22 chr1 20607941 20608313 -261585351 - Charlie4a DNA MER1_type -1459 502 95 2162 107 0 14 chr1 20608313 20608629 -261585035 + AluSp SINE Alu 1 313 0 1518 199 87 22 chr1 20608629 20608704 -261584960 - Charlie4a DNA MER1_type -1866 95 26 181 203 156 0 chr1 20609060 20609124 -261584540 - L2 LINE L2 -86 3227 3154 251 145 129 81 chr1 20609337 20609399 -261584265 + MIR SINE MIR 88 152 -110 234 0 0 0 chr1 20609499 20609525 -261584139 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr1 20610385 20610412 -261583252 + GC_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chr1 20610671 20610725 -261582939 + GC_rich Low_complexity Low_complexity 1 54 0 237 128 0 0 chr1 20610847 20610894 -261582770 + (CGG)n Simple_repeat Simple_repeat 2 48 0 554 266 54 49 chr1 20611704 20611907 -261581757 - MIR SINE MIR -42 220 17 196 261 207 0 chr1 20612700 20612811 -261580853 + MIR SINE MIR 50 183 -79 225 235 0 59 chr1 20613487 20613555 -261580109 + MIR3 SINE MIR 96 159 -49 238 255 0 0 chr1 20613820 20613871 -261579793 + MIR3 SINE MIR 151 201 -7 1397 235 37 10 chr1 20614238 20614646 -261579018 - L1MB8 LINE L1 -2 6176 5758 514 267 20 7 chr1 20615015 20615165 -261578499 + MIR3 SINE MIR 16 167 -41 225 0 0 0 chr1 20615802 20615827 -261577837 + (C)n Simple_repeat Simple_repeat 1 25 0 214 318 76 0 chr1 20616452 20616518 -261577146 - MIR3 SINE MIR -29 179 109 364 223 61 95 chr1 20617013 20617161 -261576503 + MIR SINE MIR 50 192 -70 219 239 0 0 chr1 20617763 20617830 -261575834 + (CA)n Simple_repeat Simple_repeat 1 67 0 272 309 87 53 chr1 20618155 20618362 -261575302 + L2 LINE L2 3046 3259 -13 364 184 40 0 chr1 20618574 20618650 -261575014 + MIR SINE MIR 74 152 -110 244 341 15 68 chr1 20619256 20619388 -261574276 + MIR SINE MIR 88 212 -50 373 252 134 35 chr1 20619430 20619630 -261574034 - MIR SINE MIR -12 250 33 230 309 20 81 chr1 20620013 20620162 -261573502 + MIR3 SINE MIR 4 143 -65 213 239 28 42 chr1 20620602 20620673 -261572991 + L2 LINE L2 3244 3313 0 632 251 35 66 chr1 20620680 20620866 -261572798 - MIR SINE MIR -10 252 73 2234 97 0 13 chr1 20620866 20621177 -261572487 + AluSg SINE Alu 1 307 -3 632 251 35 66 chr1 20621177 20621217 -261572447 - MIR SINE MIR -189 73 33 356 307 44 9 chr1 20621262 20621376 -261572288 + MIR SINE MIR 95 212 -50 339 262 35 5 chr1 20621615 20621731 -261571933 + MIR SINE MIR 33 153 -68 457 328 82 11 chr1 20622350 20622533 -261571131 - L2 LINE L2 -151 3121 2926 246 343 0 9 chr1 20622632 20622737 -261570927 + CT-rich Low_complexity Low_complexity 4 107 0 372 257 129 0 chr1 20623437 20623538 -261570126 - MIR SINE MIR -65 143 30 1579 168 0 43 chr1 20624195 20624498 -261569166 - AluJo SINE Alu -22 290 1 1256 115 0 0 chr1 20624574 20624756 -261568908 + AluSg/x SINE Alu 131 312 0 361 220 199 28 chr1 20624978 20625119 -261568545 + MIR SINE MIR 47 211 -51 263 391 19 26 chr1 20625746 20625902 -261567762 - MIR3 SINE MIR -37 171 17 424 312 58 24 chr1 20626369 20626574 -261567090 - MIR SINE MIR -20 242 31 600 146 0 0 chr1 20626949 20627052 -261566612 + (TCCA)n Simple_repeat Simple_repeat 2 104 0 426 268 134 38 chr1 20627156 20627313 -261566351 - MIR3 SINE MIR -21 187 16 287 328 181 29 chr1 20627610 20627848 -261565816 - L3b LINE CR1 -27 1556 1283 393 240 72 56 chr1 20628062 20628187 -261565477 - MIR3 SINE MIR -21 187 61 271 241 12 36 chr1 20628926 20629009 -261564655 - MIR SINE MIR -87 121 41 215 292 62 0 chr1 20629041 20629106 -261564558 - L2 LINE L2 -2 3311 3243 556 246 42 30 chr1 20629304 20629471 -261564193 - MIR SINE MIR -64 198 30 339 231 0 0 chr1 20629860 20629925 -261563739 + MIR SINE MIR 83 147 -61 259 284 0 6 chr1 20630492 20630565 -261563099 + MIR SINE MIR 69 140 -68 306 224 229 23 chr1 20630657 20630813 -261562851 - MIR3 SINE MIR -59 149 7 351 331 53 103 chr1 20631471 20631576 -261562088 - L2 LINE L2 -5 3267 3158 1803 134 26 54 chr1 20631576 20631889 -261561775 + AluJo SINE Alu 1 304 -8 351 331 53 103 chr1 20631889 20632161 -261561503 - L2 LINE L2 -114 3158 2909 472 316 53 18 chr1 20632769 20632997 -261560667 + L1ME4a LINE L1 5849 6084 -37 1710 128 40 75 chr1 20633111 20633211 -261560453 + L1MB3 LINE L1 5799 5901 -282 2063 123 6 22 chr1 20633211 20633528 -261560136 + AluJb SINE Alu 1 312 0 1710 128 40 75 chr1 20633528 20633802 -261559862 + L1MB3 LINE L1 5901 6160 -23 1928 105 59 0 chr1 20633804 20634090 -261559574 - AluJb SINE Alu -9 303 1 192 246 169 15 chr1 20634475 20634540 -261559124 + L2 LINE L2 3188 3262 -10 206 359 26 0 chr1 20634639 20634717 -261558947 - L2 LINE L2 -7 3265 3186 661 288 79 5 chr1 20634918 20635137 -261558527 - MIR SINE MIR 0 262 29 191 326 62 54 chr1 20635405 20635534 -261558130 - MIR SINE MIR -123 139 10 204 319 255 21 chr1 20635831 20635972 -261557692 + MIR SINE MIR 86 259 -3 205 247 41 41 chr1 20636061 20636134 -261557530 - L2 LINE L2 -173 3099 3027 1936 154 0 3 chr1 20636395 20636694 -261556970 - AluJo SINE Alu -14 298 1 198 342 44 26 chr1 20637189 20637303 -261556361 + MIR SINE MIR 6 121 -141 553 290 129 13 chr1 20637343 20637567 -261556097 - MIR SINE MIR -11 251 2 458 292 22 0 chr1 20637684 20637821 -261555843 - MIR3 SINE MIR -26 182 43 301 326 42 0 chr1 20638294 20638389 -261555275 - MIR SINE MIR -47 215 117 215 245 0 0 chr1 20638502 20638551 -261555113 + L2 LINE L2 3224 3272 0 512 291 0 8 chr1 20638788 20638915 -261554749 - MIR SINE MIR -64 144 19 554 250 70 17 chr1 20641375 20641547 -261552117 + MIR SINE MIR 64 244 -18 640 199 6 6 chr1 20641568 20641739 -261551925 + (CACCAT)n Simple_repeat Simple_repeat 1 171 0 * 689 212 6 0 chr1 20641706 20641885 -261551779 + (CAT)n Simple_repeat Simple_repeat 1 180 0 215 308 0 0 chr1 20642007 20642059 -261551605 + L2 LINE L2 3213 3264 -8 542 244 100 14 chr1 20642835 20643033 -261550631 - MIR SINE MIR -36 226 15 425 221 58 0 chr1 20643140 20643244 -261550420 + LTR67 LTR ERVL 113 222 -335 195 320 112 0 chr1 20643864 20643966 -261549698 + MIR SINE MIR 96 219 -43 675 226 27 38 chr1 20644002 20644024 -261549640 - MIR SINE MIR -71 191 170 2222 99 0 7 chr1 20644024 20644342 -261549322 - AluSx SINE Alu 0 312 1 675 226 27 38 chr1 20644342 20644505 -261549159 - MIR SINE MIR -92 170 8 502 217 196 0 chr1 20644641 20644784 -261548880 - MER58C DNA MER1_type 0 215 45 305 265 118 0 chr1 20645012 20645114 -261548550 + MIR SINE MIR 117 230 -32 220 215 139 13 chr1 20645224 20645303 -261548361 + MIR3 SINE MIR 87 175 -33 319 278 167 16 chr1 20645817 20645974 -261547690 - MIR SINE MIR -67 141 3 432 264 50 0 chr1 20646042 20646163 -261547501 - L3 LINE CR1 -107 1470 1344 355 245 9 28 chr1 20646800 20646906 -261546758 + MER53 DNA DNA 1 104 -85 216 266 101 13 chr1 20647135 20647214 -261546450 + MIR SINE MIR 89 174 -88 450 276 17 0 chr1 20647926 20648042 -261545622 + MIR SINE MIR 40 157 -105 2121 135 0 3 chr1 20649553 20649864 -261543800 - AluSx SINE Alu -2 310 1 218 108 27 0 chr1 20649982 20650019 -261543645 - MIR SINE MIR -145 117 80 410 329 82 6 chr1 20650325 20650495 -261543169 + MIR SINE MIR 28 210 -52 372 307 234 13 chr1 20651121 20651518 -261542146 - L2 LINE L2 -2 3311 2827 276 294 78 10 chr1 20652028 20652130 -261541534 + L2 LINE L2 3204 3312 -1 205 398 29 10 chr1 20652179 20652282 -261541382 + MIR SINE MIR 86 190 -72 212 314 117 7 chr1 20653598 20653735 -261539929 - MIR SINE MIR -65 197 46 506 291 62 11 chr1 20656698 20656877 -261536787 + MIR SINE MIR 67 254 -8 2130 98 3 0 chr1 20657775 20658061 -261535603 + AluSq SINE Alu 1 287 -26 285 51 0 0 chr1 20658061 20658100 -261535564 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 370 239 18 62 chr1 20662242 20662355 -261531309 - MIR3 SINE MIR -86 122 15 668 251 59 14 chr1 20662556 20662768 -261530896 - MIR SINE MIR -28 234 19 1613 147 82 25 chr1 20663863 20664142 -261529522 - AluJo SINE Alu -17 295 1 186 43 0 0 chr1 20665422 20665445 -261528219 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 339 226 118 11 chr1 20665470 20665563 -261528101 + MIR SINE MIR 58 160 -102 2345 98 0 0 chr1 20665563 20665858 -261527806 + AluSq SINE Alu 1 295 -18 186 43 0 0 chr1 20666661 20666684 -261526980 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 264 206 196 22 chr1 20667733 20667825 -261525839 + MIR SINE MIR 2 109 -153 482 213 57 8 chr1 20668709 20668831 -261524833 + MIR SINE MIR 66 193 -69 273 242 242 16 chr1 20669477 20669605 -261524059 + MIR SINE MIR 63 219 -43 203 184 0 0 chr1 20670303 20670341 -261523323 - L2 LINE L2 -86 3227 3190 361 348 133 11 chr1 20670367 20670720 -261522944 + L2 LINE L2 2339 2734 -580 190 314 59 39 chr1 20670765 20670867 -261522797 + L2 LINE L2 2856 2959 -313 2321 105 0 3 chr1 20671136 20671440 -261522224 + AluSq SINE Alu 1 303 -10 1944 163 42 15 chr1 20671790 20672665 -261520999 + L1MD1 LINE L1 5274 6242 0 198 313 136 20 chr1 20673850 20673997 -261519667 + L2 LINE L2 2705 2868 -446 356 259 63 81 chr1 20674821 20674995 -261518669 + MIR3 SINE MIR 33 203 -5 220 227 0 0 chr1 20675455 20675499 -261518165 + (TATG)n Simple_repeat Simple_repeat 4 47 0 249 220 0 20 chr1 20677873 20677923 -261515741 - L2 LINE L2 -8 3305 3257 204 263 195 51 chr1 20678332 20678450 -261515214 - MIR SINE MIR -105 157 23 308 250 36 36 chr1 20679234 20679346 -261514318 + GA-rich Low_complexity Low_complexity 4 115 0 356 246 141 75 chr1 20680451 20680650 -261513014 - MIR SINE MIR -4 258 47 309 288 192 0 chr1 20682182 20682307 -261511357 + L2 LINE L2 3107 3255 -17 1352 181 26 0 chr1 20682471 20682697 -261510967 + AluJb SINE Alu 65 296 -16 650 322 97 11 chr1 20683218 20683578 -261510086 + L1MEd LINE L1 443 833 -5286 2273 87 3 3 chr1 20683621 20683909 -261509755 + AluSp SINE Alu 16 303 -10 270 256 67 0 chr1 20684070 20684160 -261509504 + L1MEd LINE L1 1012 1107 -5024 211 184 0 0 chr1 20685870 20685908 -261507756 + (CCA)n Simple_repeat Simple_repeat 1 38 0 2500 200 93 12 chr1 20687697 20687822 -261505842 - Charlie1a DNA MER1_type -1306 1455 1342 1944 162 0 13 chr1 20687822 20688130 -261505534 + AluJb SINE Alu 1 304 -8 2500 200 93 12 chr1 20688130 20688648 -261505016 - Charlie1a DNA MER1_type -1419 1342 760 1766 237 133 6 chr1 20688619 20689151 -261504513 - Charlie1a DNA MER1_type -855 600 1 * 221 351 22 52 chr1 20689662 20689796 -261503868 - L2 LINE L2 0 3272 3143 759 279 104 0 chr1 20689864 20690086 -261503578 - MIR SINE MIR -4 258 14 205 354 24 0 chr1 20690094 20690176 -261503488 - L2 LINE L2 -324 2948 2865 496 230 55 25 chr1 20691619 20691819 -261501845 + L2 LINE L2 2750 2955 -359 1076 176 25 25 chr1 20691876 20691939 -261501725 - AluSx SINE Alu -113 199 137 2367 99 10 0 chr1 20691939 20692243 -261501421 - AluSp SINE Alu -6 307 1 1076 176 25 25 chr1 20692243 20692378 -261501286 - AluSx SINE Alu -174 138 1 355 308 63 14 chr1 20692378 20692521 -261501143 - MIR SINE MIR -111 151 2 601 253 167 0 chr1 20693275 20693449 -261500215 - MIR SINE MIR -50 212 10 320 270 82 99 chr1 20694469 20694714 -261498950 - MIR SINE MIR -12 250 11 225 108 0 0 chr1 20695517 20695554 -261498110 + (CA)n Simple_repeat Simple_repeat 1 37 0 878 226 116 0 chr1 20696444 20696643 -261497021 - MIR SINE MIR 0 262 41 878 150 0 29 chr1 20697845 20697985 -261495679 - AluJb SINE Alu -176 136 1 357 179 179 0 chr1 20698507 20698585 -261495079 + L1MB8 LINE L1 6081 6172 -6 1502 114 0 23 chr1 20698742 20698962 -261494702 - AluJo SINE Alu -11 301 87 193 312 57 50 chr1 20699000 20699141 -261494523 - L2 LINE L2 -8 3305 3164 239 175 0 0 chr1 20700871 20700911 -261492753 + tRNA-Gly-GGA tRNA tRNA 2 41 -34 425 231 157 8 chr1 20702105 20702226 -261491438 + L2 LINE L2 3175 3313 0 2244 112 3 3 chr1 20703493 20703796 -261489868 + AluSx SINE Alu 1 303 -9 668 168 140 11 chr1 20704161 20704340 -261489324 + LTR50 LTR ERVL 8 209 -586 282 233 14 0 chr1 20704454 20704527 -261489137 + LTR50 LTR ERVL 611 684 -111 611 323 19 49 chr1 20706155 20706418 -261487246 - MIR SINE MIR -1 261 7 297 312 36 29 chr1 20708274 20708412 -261485252 + L2 LINE L2 3175 3313 0 350 323 39 15 chr1 20709023 20709153 -261484511 + MIR SINE MIR 16 148 -60 746 225 14 0 chr1 20710384 20710526 -261483138 + AluJo SINE Alu 126 269 -43 1348 182 159 0 chr1 20710599 20710863 -261482801 + AluJo SINE Alu 1 306 -6 1917 164 7 0 chr1 20711234 20711532 -261482132 - AluJo SINE Alu -12 300 1 237 33 0 0 chr1 20711567 20711597 -261482067 + (A)n Simple_repeat Simple_repeat 1 30 0 1156 277 92 70 chr1 20711882 20711917 -261481747 + L1 LINE L1 2746 2779 -3367 2258 113 3 0 chr1 20711917 20712219 -261481445 + AluSp SINE Alu 3 305 -8 1156 277 92 70 chr1 20712219 20712501 -261481163 + L1 LINE L1 2779 3053 -3093 2171 135 0 0 chr1 20712501 20712805 -261480859 - AluSx SINE Alu -8 304 1 1156 277 92 70 chr1 20712805 20713990 -261479674 + L1 LINE L1 3053 4282 -1864 1414 159 78 30 chr1 20713991 20714120 -261479544 + AluJo SINE Alu 1 122 -191 2164 135 0 22 chr1 20714120 20714438 -261479226 + AluSx SINE Alu 1 311 -1 1414 159 78 30 chr1 20714438 20714608 -261479056 + AluJo SINE Alu 122 313 0 768 184 127 0 chr1 20714610 20714768 -261478896 + FRAM SINE Alu 1 176 0 1595 263 105 10 chr1 20715264 20715964 -261477700 - L1 LINE L1 -996 5150 4381 833 312 71 20 chr1 20716045 20716607 -261477057 + L1MEc LINE L1 1270 1811 -851 432 320 43 49 chr1 20716686 20717036 -261476628 + L1MEc LINE L1 1963 2310 -4086 1944 138 7 3 chr1 20717340 20717638 -261476026 + AluJb SINE Alu 1 299 -13 180 125 0 0 chr1 20718348 20718380 -261475284 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 269 26 26 0 chr1 20719577 20719615 -261474049 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 967 178 128 6 chr1 20722902 20723165 -261470499 + MER33 DNA MER1_type 1 287 -37 1573 104 148 8 chr1 20723165 20723415 -261470249 + AluSg1 SINE Alu 1 285 -24 242 116 23 0 chr1 20723418 20723461 -261470203 + GA-rich Low_complexity Low_complexity 1 44 0 993 122 6 17 chr1 20723464 20723645 -261470019 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 258 305 12 0 chr1 20724852 20724934 -261468730 - L2 LINE L2 -21 3251 3169 315 0 0 0 chr1 20725832 20725867 -261467797 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 250 75 33 chr1 20730126 20730246 -261463418 + L1M4 LINE L1 1443 1567 -4975 867 200 18 30 chr1 20736342 20736507 -261457157 - AluJo SINE Alu -24 288 126 1296 138 0 74 chr1 20738776 20739007 -261454657 - AluJb SINE Alu -19 293 80 600 118 17 84 chr1 20739107 20739226 -261454438 - AluJb SINE Alu -200 112 2 1850 165 0 14 chr1 20739324 20739621 -261454043 + AluSx SINE Alu 1 293 -19 208 305 17 0 chr1 20739736 20739795 -261453869 + L3 LINE CR1 1056 1115 -462 1617 148 21 32 chr1 20740068 20740351 -261453313 - AluJb SINE Alu -13 299 20 944 206 31 0 chr1 20740946 20741140 -261452524 + MER105 DNA DNA 1 200 -4 196 256 0 0 chr1 20741848 20741891 -261451773 + MIR3 SINE MIR 152 194 -14 1648 127 35 92 chr1 20746285 20746600 -261447064 + AluJb SINE Alu 1 297 -15 2503 60 0 3 chr1 20748385 20748685 -261444979 + AluY SINE Alu 1 299 -12 223 294 262 0 chr1 20748788 20748914 -261444750 - MIR SINE MIR -10 252 94 1072 194 0 5 chr1 20749888 20750084 -261443580 + AluJo SINE Alu 84 278 -34 225 196 22 0 chr1 20750086 20750132 -261443532 + GA-rich Low_complexity Low_complexity 5 51 0 414 277 144 20 chr1 20750161 20750356 -261443308 + MIR SINE MIR 31 249 -13 248 221 61 117 chr1 20750793 20750956 -261442708 - MER103 DNA DNA -11 155 2 470 229 46 18 chr1 20750997 20751106 -261442558 + L2 LINE L2 3190 3301 -12 2013 121 14 27 chr1 20751248 20751545 -261442119 + AluSx SINE Alu 1 293 -19 578 232 89 12 chr1 20751631 20751799 -261441865 - Charlie8 DNA MER1_type -2192 225 45 2278 107 0 0 chr1 20751924 20752215 -261441449 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr1 20752215 20752238 -261441426 + AT_rich Low_complexity Low_complexity 1 23 0 1139 175 57 24 chr1 20754813 20755024 -261438640 - MER20 DNA MER1_type -1 218 1 1754 158 36 16 chr1 20755471 20755775 -261437889 - AluJb SINE Alu -2 310 1 2078 119 3 20 chr1 20755779 20756082 -261437582 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 20756084 20756105 -261437559 + AT_rich Low_complexity Low_complexity 1 21 0 435 155 42 0 chr1 20757622 20757693 -261435971 + AluJ/FLAM SINE Alu 1 74 -238 21 0 0 0 chr1 20759615 20759636 -261434028 + AT_rich Low_complexity Low_complexity 1 21 0 1884 124 0 0 chr1 20759869 20760128 -261433536 - AluSx SINE Alu -5 307 49 209 340 113 43 chr1 20760690 20760785 -261432879 + L2 LINE L2 2251 2338 -976 688 211 151 91 chr1 20760785 20761070 -261432594 + AluJo SINE Alu 1 302 0 209 340 113 43 chr1 20761070 20761303 -261432361 + L2 LINE L2 2338 2602 -712 * 414 194 0 0 chr1 20761301 20761368 -261432296 + L2 LINE L2 3246 3312 -1 3382 138 42 11 chr1 20761470 20762043 -261431621 - L1MB3 LINE L1 0 6183 5593 1132 136 6 6 chr1 20762032 20762194 -261431470 - FAM SINE Alu -14 171 10 1009 153 46 25 chr1 20762194 20762390 -261431274 - L1MB3 LINE L1 -564 5619 5420 331 278 13 85 chr1 20762391 20762565 -261431099 + L1ME1 LINE L1 5786 5949 -213 183 156 0 0 chr1 20762590 20762622 -261431042 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 346 223 45 27 chr1 20762811 20762923 -261430741 - L1P5 LINE L1 -725 5431 5318 2455 83 0 0 chr1 20763127 20763428 -261430236 + AluSx SINE Alu 1 301 -11 375 325 30 0 chr1 20764419 20764585 -261429079 - MIR SINE MIR -21 241 71 284 269 0 0 chr1 20765072 20765151 -261428513 + L1ME1 LINE L1 6052 6289 -44 2171 92 30 16 chr1 20765249 20765553 -261428111 - AluSg SINE Alu -2 308 1 299 24 0 24 chr1 20766760 20766801 -261426863 + (TA)n Simple_repeat Simple_repeat 1 40 0 354 151 7 26 chr1 20767464 20767754 -261425910 + AluJo SINE Alu 1 334 0 1761 197 0 0 chr1 20767955 20768259 -261425405 + AluJb SINE Alu 1 304 -8 703 267 102 68 chr1 20768314 20768369 -261425295 + L1ME LINE L1 5255 5307 -814 1794 175 6 19 chr1 20768369 20768684 -261424980 + AluJo SINE Alu 1 311 -1 703 267 102 68 chr1 20768684 20769170 -261424494 + L1ME LINE L1 5307 5819 -302 378 257 143 7 chr1 20769249 20769389 -261424275 + HAL1b LINE L1 1187 1345 -3 276 331 81 75 chr1 20769516 20769688 -261423976 + L2 LINE L2 2953 3129 -143 2031 139 3 23 chr1 20769688 20769997 -261423667 + AluSx SINE Alu 1 303 -9 276 331 81 75 chr1 20769997 20770132 -261423532 + L2 LINE L2 3129 3262 -10 1256 276 141 35 chr1 20770137 20770871 -261422793 + L2 LINE L2 2247 3110 -203 2186 125 0 3 chr1 20770871 20771175 -261422489 + AluSx SINE Alu 1 303 -9 1256 276 141 35 chr1 20771175 20771381 -261422283 + L2 LINE L2 3110 3293 -20 247 247 27 14 chr1 20771636 20771709 -261421955 - MIR SINE MIR -111 151 78 213 299 103 17 chr1 20772348 20772465 -261421199 + L2 LINE L2 2965 3091 -222 2181 114 21 0 chr1 20772471 20772760 -261420904 - AluSq SINE Alu -18 295 1 228 174 159 14 chr1 20772821 20772890 -261420774 + L2 LINE L2 3232 3310 -3 1852 171 127 76 chr1 20773371 20774092 -261419572 + L1MC2 LINE L1 5594 6275 -58 817 220 5 27 chr1 20774103 20774289 -261419375 + AluJo SINE Alu 121 302 -10 2202 111 3 0 chr1 20774296 20774585 -261419079 + AluSq SINE Alu 1 290 -23 448 235 0 0 chr1 20774643 20774747 -261418917 + FLAM_A SINE Alu 36 139 0 2227 83 0 17 chr1 20774755 20775072 -261418592 + AluY SINE Alu 1 312 0 29 60 0 0 chr1 20775076 20775126 -261418538 + AT_rich Low_complexity Low_complexity 1 50 0 314 360 35 15 chr1 20775443 20775640 -261418024 + L2 LINE L2 2560 2760 -554 441 0 0 0 chr1 20775746 20775795 -261417869 + (CA)n Simple_repeat Simple_repeat 2 50 0 197 327 101 31 chr1 20776524 20776683 -261416981 + L2 LINE L2 3122 3291 -22 1893 157 7 0 chr1 20777123 20777416 -261416248 + AluJb SINE Alu 1 295 -17 630 325 142 13 chr1 20778826 20779128 -261414536 + MER102b DNA MER1_type 1 341 0 946 198 82 5 chr1 20779152 20779359 -261414305 + MER58A DNA MER1_type 1 223 -1 597 196 184 34 chr1 20779764 20779943 -261413721 - MIR SINE MIR -45 217 12 1339 93 88 19 chr1 20779946 20780161 -261413503 + MER30 DNA MER1_type 1 230 0 766 102 0 169 chr1 20780218 20780384 -261413280 + AluJb SINE Alu 2 139 -173 26 74 0 0 chr1 20780399 20780453 -261413211 + AT_rich Low_complexity Low_complexity 1 54 0 273 56 0 0 chr1 20780556 20780592 -261413072 + MER30B DNA MER1_type 43 78 -112 1780 135 29 11 chr1 20780648 20780922 -261412742 + AluJo SINE Alu 11 289 -23 395 242 86 86 chr1 20781605 20781727 -261411937 - MIR SINE MIR 0 262 138 1782 141 0 0 chr1 20781727 20781976 -261411688 + AluSx SINE Alu 41 289 -23 395 242 86 86 chr1 20781976 20782051 -261411613 - MIR SINE MIR -123 139 65 2162 111 17 0 chr1 20782581 20782878 -261410786 + AluSg1 SINE Alu 1 302 -7 2094 115 3 0 chr1 20783005 20783291 -261410373 + AluSx SINE Alu 11 297 -15 2293 85 3 17 chr1 20783782 20784077 -261409587 - AluSg SINE Alu -19 291 1 31 0 0 0 chr1 20784296 20784327 -261409337 + AT_rich Low_complexity Low_complexity 1 31 0 760 164 0 75 chr1 20785954 20786113 -261407551 + FRAM SINE Alu 1 146 -30 2164 81 27 34 chr1 20786115 20786412 -261407252 - AluSq SINE Alu -18 295 1 2255 121 0 0 chr1 20787123 20787429 -261406235 + AluSx SINE Alu 1 306 -6 1368 182 149 0 chr1 20787481 20787777 -261405887 + MER58B DNA MER1_type 2 341 0 2417 99 0 0 chr1 20787962 20788266 -261405398 + AluY SINE Alu 1 304 -7 1610 139 36 7 chr1 20789269 20789550 -261404114 + MSTB-int LTR MaLR 1349 1637 -14 2382 154 24 14 chr1 20789568 20789990 -261403674 + MSTB LTR MaLR 1 426 0 268 323 0 10 chr1 20790513 20790612 -261403052 + MIR SINE MIR 39 136 -126 207 125 38 188 chr1 20790661 20790741 -261402923 - L2 LINE L2 -19 3294 3227 2013 141 0 13 chr1 20790973 20791279 -261402385 + AluSx SINE Alu 1 302 -10 207 178 67 0 chr1 20792859 20792904 -261400760 + L2 LINE L2 3221 3268 -4 1805 142 16 39 chr1 20793803 20794008 -261399656 + AluSx SINE Alu 1 198 -114 2596 66 0 0 chr1 20794008 20794313 -261399351 + AluY SINE Alu 1 305 -6 1805 142 16 39 chr1 20794313 20794416 -261399248 + AluSx SINE Alu 198 302 -10 2155 118 3 10 chr1 20794789 20795093 -261398571 - AluSg SINE Alu -8 302 1 265 288 0 14 chr1 20795419 20795492 -261398172 - MIR SINE MIR -182 80 9 566 272 118 64 chr1 20796219 20796242 -261397422 - MER102a DNA MER1_type -1087 330 310 1961 125 34 7 chr1 20796242 20796538 -261397126 + AluJb SINE Alu 1 304 -8 566 272 118 64 chr1 20796538 20796827 -261396837 - MER102a DNA MER1_type -1107 310 1 422 350 46 9 chr1 20800215 20800432 -261393232 - MIR SINE MIR -26 236 12 2463 92 0 0 chr1 20801057 20801361 -261392303 - AluSx SINE Alu -8 304 1 2358 87 3 10 chr1 20801371 20801669 -261391995 - AluSq SINE Alu -17 296 1 1967 91 80 0 chr1 20801670 20801945 -261391719 - AluSq SINE Alu -16 297 1 31 0 0 0 chr1 20802164 20802195 -261391469 + AT_rich Low_complexity Low_complexity 1 31 0 235 191 0 44 chr1 20804279 20804347 -261389317 + (CCG)n Simple_repeat Simple_repeat 2 66 0 1368 160 45 45 chr1 20805371 20805659 -261388005 - AluJb SINE Alu -24 288 1 21 36 0 0 chr1 20806079 20806107 -261387557 + AT_rich Low_complexity Low_complexity 1 28 0 375 243 34 40 chr1 20806516 20806664 -261387000 + L1ME3 LINE L1 6015 6161 -1 686 138 26 17 chr1 20807253 20807396 -261386268 + L1MC4 LINE L1 7880 7988 -7 1498 74 5 0 chr1 20808923 20809112 -261384552 + AluSg/x SINE Alu 118 307 -3 2106 135 3 0 chr1 20809119 20809416 -261384248 + AluSx SINE Alu 1 298 -14 1979 132 13 32 chr1 20809779 20810089 -261383575 - AluSx SINE Alu -8 304 1 891 171 26 0 chr1 20810191 20810343 -261383321 + FRAM SINE Alu 1 156 -10 415 87 0 29 chr1 20810577 20810646 -261383018 + L1MA2 LINE L1 6237 6303 -1 2026 128 10 7 chr1 20810792 20811090 -261382574 - AluJo SINE Alu -13 299 1 1749 106 121 11 chr1 20811366 20811630 -261382034 + AluSg SINE Alu 1 293 -17 25 31 0 0 chr1 20812501 20812533 -261381131 + AT_rich Low_complexity Low_complexity 1 32 0 1214 226 42 36 chr1 20814355 20814786 -261378878 + L2 LINE L2 2804 3278 -35 2238 107 0 10 chr1 20815454 20815754 -261377910 + AluSc SINE Alu 1 297 -12 2041 90 23 0 chr1 20815890 20816146 -261377518 + AluSx SINE Alu 6 267 -45 663 131 16 31 chr1 20816278 20816522 -261377142 + AluJb SINE Alu 1 299 -13 508 255 55 12 chr1 20817167 20817379 -261376285 - MIR SINE MIR 0 262 2 290 358 140 0 chr1 20817822 20818001 -261375663 - MIR SINE MIR -12 250 47 2577 258 114 18 chr1 20818031 20819333 -261374331 + L2 LINE L2 1868 3302 -11 1902 161 13 17 chr1 20819335 20819472 -261374192 + AluJo SINE Alu 1 137 -175 2379 93 10 0 chr1 20819472 20819774 -261373890 + AluSc SINE Alu 3 307 -2 1902 161 13 17 chr1 20819774 20819934 -261373730 + AluJo SINE Alu 137 297 -15 517 225 138 0 chr1 20819954 20820114 -261373550 - MIR SINE MIR -21 241 60 687 213 0 0 chr1 20820436 20820577 -261373087 + FLAM_C SINE Alu 2 142 -1 23 0 0 0 chr1 20820633 20820656 -261373008 + AT_rich Low_complexity Low_complexity 1 23 0 1937 135 0 60 chr1 20820656 20820974 -261372690 - AluJb SINE Alu -13 299 1 922 196 45 17 chr1 20820981 20821160 -261372504 + AluJb SINE Alu 129 312 0 677 303 60 4 chr1 20821160 20821394 -261372270 - MIR SINE MIR -1 261 15 1756 124 116 4 chr1 20821685 20821960 -261371704 + AluSx SINE Alu 1 306 -6 2413 97 3 0 chr1 20822024 20822332 -261371332 + AluSp SINE Alu 1 309 -4 501 298 60 0 chr1 20822598 20822766 -261370898 + L1ME3A LINE L1 5991 6168 -2 2226 99 27 0 chr1 20822870 20823162 -261370502 + AluSx SINE Alu 1 300 -12 21 57 0 0 chr1 20823378 20823413 -261370251 + AT_rich Low_complexity Low_complexity 1 35 0 631 230 173 5 chr1 20823854 20824045 -261369619 - MIR SINE MIR -22 240 18 2362 93 0 3 chr1 20824389 20824690 -261368974 + AluSg SINE Alu 1 300 -10 434 266 62 0 chr1 20824692 20824805 -261368859 + L2 LINE L2 3192 3311 -2 2039 131 3 13 chr1 20825725 20826023 -261367641 - AluJb SINE Alu -17 295 1 1990 95 0 0 chr1 20826080 20826323 -261367341 + AluSx SINE Alu 1 243 -69 541 330 73 5 chr1 20827842 20828060 -261365604 + MIR SINE MIR 16 248 -14 248 235 0 59 chr1 20828351 20828419 -261365245 + L2 LINE L2 3209 3272 0 2314 100 0 7 chr1 20828667 20828966 -261364698 + AluSg SINE Alu 3 299 -11 1892 143 14 18 chr1 20829386 20829521 -261364143 + AluJb SINE Alu 1 135 -173 2411 58 3 20 chr1 20829521 20829844 -261363820 + AluY SINE Alu 1 311 0 1892 143 14 18 chr1 20829844 20830017 -261363647 + AluJb SINE Alu 135 308 0 2027 93 68 7 chr1 20830194 20830474 -261363190 + AluSq SINE Alu 1 297 -16 2417 83 3 10 chr1 20830475 20830776 -261362888 + AluSq SINE Alu 1 299 -14 2521 88 0 0 chr1 20830786 20831092 -261362572 + AluSx SINE Alu 1 306 -6 496 347 41 16 chr1 20831707 20831949 -261361715 + MIR SINE MIR 2 249 -13 526 262 134 80 chr1 20835322 20835611 -261358053 + MER102a DNA MER1_type 1 310 -1107 2001 125 34 7 chr1 20835611 20835907 -261357757 - AluJb SINE Alu -8 304 1 526 262 134 80 chr1 20835907 20835930 -261357734 + MER102a DNA MER1_type 310 330 0 281 300 0 12 chr1 20836650 20836730 -261356934 + MIR SINE MIR 2 80 -182 2186 121 3 10 chr1 20837056 20837363 -261356301 + AluSg SINE Alu 1 305 -5 1521 158 29 0 chr1 20838521 20838762 -261354902 - AluJb SINE Alu -21 291 44 2375 81 3 14 chr1 20839256 20839553 -261354111 + AluSp SINE Alu 1 294 -19 2427 89 0 7 chr1 20839724 20840027 -261353637 - AluSq SINE Alu -12 301 1 597 86 97 0 chr1 20840114 20840207 -261353457 + AluJb SINE Alu 192 293 -19 2148 136 3 0 chr1 20840209 20840510 -261353154 + AluSx SINE Alu 1 302 -10 2081 147 10 0 chr1 20840603 20840910 -261352754 + AluSx SINE Alu 3 312 0 1521 212 89 8 chr1 20840934 20841293 -261352371 + MLT1B LTR MaLR 3 390 0 676 206 8 0 chr1 20841312 20841438 -261352226 - FLAM_A SINE Alu -6 127 1 6224 131 59 40 chr1 20841469 20841843 -261351821 + Tigger3b DNA MER2_type 1 366 -2662 2140 130 3 0 chr1 20841843 20842135 -261351529 + AluSx SINE Alu 1 293 -19 6224 131 59 40 chr1 20842135 20842293 -261351371 + Tigger3b DNA MER2_type 366 520 -2508 1912 151 6 41 chr1 20842293 20842515 -261351149 - AluJb SINE Alu -5 307 79 207 0 0 0 chr1 20842515 20842538 -261351126 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2314 82 4 0 chr1 20842539 20842818 -261350846 - AluSc SINE Alu -29 280 1 1912 151 6 41 chr1 20842818 20842911 -261350753 - AluJb SINE Alu -232 80 1 6224 131 59 40 chr1 20842911 20843012 -261350652 + Tigger3b DNA MER2_type 520 618 -2410 646 226 0 0 chr1 20843012 20843136 -261350528 + FLAM_A SINE Alu 1 124 -9 6224 131 59 40 chr1 20843136 20843708 -261349956 + Tigger3b DNA MER2_type 618 1231 0 1791 154 32 0 chr1 20843743 20844022 -261349642 + AluJb SINE Alu 1 288 -24 2569 70 6 6 chr1 20844036 20844348 -261349316 + AluSp SINE Alu 1 312 -1 207 0 0 0 chr1 20844441 20844464 -261349200 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 181 259 37 0 chr1 20844657 20844711 -261348953 - L2 LINE L2 -216 3056 3001 664 255 39 26 chr1 20844723 20844954 -261348710 - MIR SINE MIR 0 262 29 724 177 0 15 chr1 20845302 20845432 -261348232 + MER45A DNA AcHobo 51 178 0 1629 118 61 50 chr1 20846455 20846516 -261347148 - AluJo SINE Alu -29 283 224 2308 95 0 10 chr1 20846516 20846822 -261346842 + AluSx SINE Alu 1 303 -9 1629 118 61 50 chr1 20846822 20847040 -261346624 - AluJo SINE Alu -88 224 1 710 270 93 56 chr1 20847127 20847759 -261345905 - L2 LINE L2 -36 3236 2548 1519 180 3 77 chr1 20848191 20848514 -261345150 + AluJb SINE Alu 1 299 -13 335 333 17 23 chr1 20849125 20849302 -261344362 - MIR SINE MIR -1 261 86 246 183 0 38 chr1 20849313 20849521 -261344143 + AluJo SINE Alu 2 300 -2 2156 129 0 0 chr1 20850334 20850621 -261343043 + AluSx SINE Alu 1 287 -25 416 232 11 11 chr1 20851420 20851515 -261342149 - MER20 DNA MER1_type -124 95 1 191 261 130 0 chr1 20852162 20852231 -261341433 + MIR SINE MIR 92 169 -93 595 179 0 0 chr1 20852313 20852419 -261341245 + AluJb SINE Alu 120 225 -87 2147 127 0 10 chr1 20853081 20853381 -261340283 + AluY SINE Alu 1 297 -14 1180 165 26 10 chr1 20853463 20853657 -261340007 + AluJo SINE Alu 66 262 -50 945 127 0 0 chr1 20854038 20854164 -261339500 - AluJb SINE Alu -186 126 1 1468 186 10 70 chr1 20855325 20855423 -261338241 + AluJo SINE Alu 1 103 -209 2500 61 3 0 chr1 20855423 20855717 -261337947 + AluY SINE Alu 1 295 -16 1468 186 10 70 chr1 20855717 20855930 -261337734 + AluJo SINE Alu 103 293 -19 209 265 96 12 chr1 20855959 20856042 -261337622 + MIR SINE MIR 65 154 -108 1529 202 3 20 chr1 20856620 20856917 -261336747 + AluJb SINE Alu 1 292 -20 1146 191 38 9 chr1 20857672 20857882 -261335782 - AluJo SINE Alu -96 216 1 2431 68 0 3 chr1 20858250 20858543 -261335121 + AluSg1 SINE Alu 10 301 -8 2561 82 0 0 chr1 20858824 20859130 -261334534 - AluY SINE Alu -5 306 1 324 264 22 11 chr1 20859639 20859730 -261333934 + MLT1G1 LTR MaLR 166 257 -338 930 168 13 0 chr1 20859880 20860029 -261333635 - AluJb SINE Alu -161 151 1 2729 192 23 32 chr1 20860038 20860396 -261333268 - L1MB7 LINE L1 0 6184 5824 231 88 0 0 chr1 20860396 20860430 -261333234 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1564 179 4 11 chr1 20860430 20860703 -261332961 - AluJo SINE Alu -30 282 12 2729 192 23 32 chr1 20860703 20861006 -261332658 - L1MB7 LINE L1 -358 5826 5528 1242 135 36 9 chr1 20861010 20861232 -261332432 + MSTB LTR MaLR 199 426 0 289 323 0 10 chr1 20861757 20861856 -261331808 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20861905 20861985 -261331679 - L2 LINE L2 -19 3294 3227 228 289 144 0 chr1 20862093 20862190 -261331474 + MIR SINE MIR 119 229 -33 2107 148 0 3 chr1 20862217 20862527 -261331137 + AluSx SINE Alu 1 309 -3 189 280 140 0 chr1 20863947 20864040 -261329624 - L2 LINE L2 0 3313 3208 216 178 67 0 chr1 20864120 20864165 -261329499 + L2 LINE L2 3221 3268 -4 1837 146 16 39 chr1 20865064 20865269 -261328395 + AluSx SINE Alu 1 198 -114 2622 66 0 0 chr1 20865269 20865574 -261328090 + AluY SINE Alu 1 305 -6 1837 146 16 39 chr1 20865574 20865677 -261327987 + AluSx SINE Alu 198 302 -10 910 144 7 39 chr1 20865737 20865890 -261327774 + AluSg/x SINE Alu 145 292 -18 1703 203 0 0 chr1 20865906 20866206 -261327458 + AluJb SINE Alu 6 305 -7 1853 131 28 21 chr1 20866525 20866816 -261326848 + AluJb SINE Alu 9 301 -11 184 250 16 62 chr1 20867008 20867072 -261326592 - MIR SINE MIR -3 259 199 274 235 0 15 chr1 20868682 20868750 -261324914 + L1MEc LINE L1 1551 1617 -4779 886 158 0 0 chr1 20868772 20868905 -261324759 + FLAM_C SINE Alu 9 141 -2 452 180 0 0 chr1 20868929 20869018 -261324646 + AluJ/FRAM SINE Alu 219 307 -5 1825 183 44 92 chr1 20869019 20869230 -261324434 + L1MEc LINE L1 2181 2400 -3815 2249 107 3 3 chr1 20869230 20869530 -261324134 + AluSp SINE Alu 2 301 -12 1825 183 44 92 chr1 20869530 20869635 -261324029 + L1MEc LINE L1 2400 2508 -3707 1685 186 13 17 chr1 20869635 20869936 -261323728 + AluJo SINE Alu 12 311 -1 1825 183 44 92 chr1 20869936 20870183 -261323481 + L1MEc LINE L1 2508 2765 -3450 2413 78 0 3 chr1 20870183 20870478 -261323186 + AluSg1 SINE Alu 3 296 -13 1825 183 44 92 chr1 20870478 20870620 -261323044 + L1MEc LINE L1 2765 2912 -3303 2161 148 0 0 chr1 20870620 20870924 -261322740 + AluSx SINE Alu 1 304 -8 2255 125 0 6 chr1 20870930 20871243 -261322421 + AluSx SINE Alu 1 311 -1 1825 183 44 92 chr1 20871243 20871319 -261322345 + L1MEc LINE L1 2821 2899 -3316 198 103 0 0 chr1 20871342 20871371 -261322293 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 820 209 84 21 chr1 20871383 20871622 -261322042 + L1MEc LINE L1 2878 3131 -3084 2147 127 3 0 chr1 20871624 20871916 -261321748 - AluSx SINE Alu -14 298 6 1270 206 36 12 chr1 20871923 20872258 -261321406 - L1M4 LINE L1 -843 5303 4961 407 167 0 56 chr1 20872258 20872348 -261321316 - AluJ/FLAM SINE Alu -226 86 2 2134 115 3 19 chr1 20872377 20872690 -261320974 + AluSc SINE Alu 1 308 -1 3880 201 35 28 chr1 20872697 20873051 -261320613 - L1MB7 LINE L1 -5 6179 5829 1545 180 13 27 chr1 20873051 20873351 -261320313 - AluJo SINE Alu -5 307 12 3880 201 35 28 chr1 20873351 20873914 -261319750 - L1MB7 LINE L1 -355 5829 5243 1614 87 18 13 chr1 20873914 20874143 -261319521 - MER30 DNA MER1_type 0 230 1 3880 201 35 28 chr1 20874143 20874339 -261319325 - L1MB7 LINE L1 -941 5243 5050 935 169 34 23 chr1 20874340 20874517 -261319147 - AluSg/x SINE Alu -12 298 120 940 205 61 51 chr1 20874517 20874655 -261319009 - L1MB7 LINE L1 -1102 5044 4909 2473 60 0 0 chr1 20874655 20874970 -261318694 - AluY SINE Alu 0 315 1 940 205 61 51 chr1 20874970 20875123 -261318541 - L1MB7 LINE L1 -1237 4909 4749 1228 113 0 36 chr1 20875126 20875320 -261318344 - AluSg/x SINE Alu 0 312 126 656 198 32 60 chr1 20875320 20875456 -261318208 - L1MB7 LINE L1 -1403 4743 4614 2001 138 10 6 chr1 20875456 20875767 -261317897 + AluSx SINE Alu 1 312 0 656 198 32 60 chr1 20875767 20875847 -261317817 - L1MB7 LINE L1 -1532 4614 4533 * 2178 143 32 5 chr1 20875846 20876225 -261317439 + MSTB-int LTR MaLR 1249 1637 -14 2300 152 24 14 chr1 20876243 20876665 -261316999 + MSTB LTR MaLR 1 426 0 289 323 0 10 chr1 20877188 20877287 -261316377 + MIR SINE MIR 39 136 -126 211 125 38 188 chr1 20877336 20877416 -261316248 - L2 LINE L2 -19 3294 3227 205 309 144 0 chr1 20877524 20877621 -261316043 + MIR SINE MIR 119 229 -33 2058 141 0 13 chr1 20877648 20877954 -261315710 + AluSx SINE Alu 1 302 -10 187 313 146 10 chr1 20879384 20879480 -261314184 - L2 LINE L2 0 3313 3205 216 178 67 0 chr1 20879556 20879601 -261314063 + L2 LINE L2 3221 3268 -4 1854 117 35 17 chr1 20880500 20880816 -261312848 + AluSg SINE Alu 1 310 0 1808 145 14 14 chr1 20881133 20881423 -261312241 + AluJb SINE Alu 9 298 -14 184 250 16 62 chr1 20881607 20881671 -261311993 - MIR SINE MIR -3 259 199 186 171 0 0 chr1 20882369 20882410 -261311254 + GA-rich Low_complexity Low_complexity 3 43 0 289 221 0 15 chr1 20883316 20883384 -261310280 + L1MEc LINE L1 1552 1618 -4778 825 158 0 8 chr1 20883400 20883533 -261310131 + FLAM_C SINE Alu 11 142 -1 423 195 0 0 chr1 20883547 20883634 -261310030 + AluJ/FRAM SINE Alu 219 305 -7 971 219 30 17 chr1 20883635 20883937 -261309727 + L1MEc LINE L1 2181 2486 -3910 1081 237 0 9 chr1 20883959 20884174 -261309490 + AluJo SINE Alu 13 225 -87 1369 208 52 48 chr1 20884201 20884593 -261309071 + L1MEc LINE L1 2433 2830 -3385 2096 134 0 0 chr1 20884593 20884905 -261308759 + AluSx SINE Alu 1 312 0 1369 208 52 48 chr1 20884905 20884973 -261308691 + L1MEc LINE L1 2830 2896 -3319 2418 108 0 6 chr1 20884975 20885309 -261308355 + AluSx SINE Alu 1 332 0 1098 201 60 36 chr1 20885377 20885618 -261308046 + L1MEc LINE L1 2878 3131 -3084 2156 137 3 0 chr1 20885618 20885924 -261307740 - AluSx SINE Alu -5 307 1 1098 201 60 36 chr1 20885924 20886015 -261307649 + L1MEc LINE L1 3131 3218 -2997 729 172 0 0 chr1 20886015 20886149 -261307515 + AluSg/x SINE Alu 177 310 0 1891 220 31 111 chr1 20886149 20886525 -261307139 + L1MEc LINE L1 3227 3631 -2584 2144 126 7 3 chr1 20886525 20886827 -261306837 + AluSx SINE Alu 1 303 -9 1799 163 24 17 chr1 20886833 20887128 -261306536 - AluJo SINE Alu -15 297 1 1891 220 31 111 chr1 20887128 20887673 -261305991 + L1MEc LINE L1 3636 4081 -2134 853 150 15 0 chr1 20887673 20887806 -261305858 + AluJo SINE Alu 1 135 -177 497 183 137 0 chr1 20887808 20887939 -261305725 + L1MEc LINE L1 4067 4215 -2000 1009 150 0 85 chr1 20887941 20888141 -261305523 - AluJb SINE Alu 0 312 130 1287 126 0 0 chr1 20888196 20888371 -261305293 + AluSg/x SINE Alu 136 310 -2 1159 100 5 37 chr1 20888372 20888562 -261305102 - HUERS-P3b LTR ERV1 -5135 2283 2100 * 4595 148 11 19 chr1 20888557 20889732 -261303932 - HUERS-P3b LTR ERV1 -4870 2126 506 952 211 54 5 chr1 20889741 20889945 -261303719 - HUERS-P3b LTR ERV1 -8705 214 1 233 193 18 18 chr1 20889945 20890002 -261303662 - LTR19C LTR ERV1 0 779 723 2507 172 39 79 chr1 20890003 20890319 -261303345 - LTR9 LTR ERV1 0 612 332 2412 109 0 0 chr1 20890319 20890632 -261303032 - AluSq SINE Alu 0 313 1 2507 172 39 79 chr1 20890632 20890936 -261302728 - LTR9 LTR ERV1 -280 332 17 2297 68 4 4 chr1 20891310 20891590 -261302074 - AluSg SINE Alu -12 298 19 1968 175 30 23 chr1 20892041 20892543 -261301121 + MLT2A2 LTR ERVL 1 507 -47 1957 132 14 7 chr1 20892546 20892848 -261300816 - AluSx SINE Alu 0 304 1 230 190 0 86 chr1 20892852 20892910 -261300754 + MLT2C1 LTR ERVL 338 390 -7 2456 67 0 3 chr1 20893254 20893579 -261300085 + AluY SINE Alu 1 324 0 2355 95 0 0 chr1 20893713 20894008 -261299656 - AluSg SINE Alu -15 295 1 303 162 10 50 chr1 20894015 20894114 -261299550 - L1MA8 LINE L1 0 6291 6197 482 271 181 10 chr1 20894352 20894645 -261299019 + MLT1G1 LTR MaLR 94 541 -54 3605 198 59 26 chr1 20894665 20895137 -261298527 - L1MB8 LINE L1 -37 6141 5686 2427 99 0 0 chr1 20895137 20895439 -261298225 - AluSx SINE Alu -10 302 1 3605 198 59 26 chr1 20895439 20895780 -261297884 - L1MB8 LINE L1 -492 5686 5358 2051 142 3 10 chr1 20895780 20896090 -261297574 - AluJb SINE Alu -2 310 3 3605 198 59 26 chr1 20896090 20896788 -261296876 - L1MB8 LINE L1 -820 5358 4569 1869 169 0 7 chr1 20896792 20897088 -261296576 - AluJb SINE Alu -13 299 6 743 201 0 0 chr1 20897252 20897396 -261296268 + AluJb SINE Alu 168 311 -1 1789 164 7 17 chr1 20898754 20899053 -261294611 + AluJo SINE Alu 1 296 -16 821 75 0 0 chr1 20899176 20899282 -261294382 - U6 snRNA snRNA 0 107 2 1559 210 7 10 chr1 20899426 20899731 -261293933 - AluJb SINE Alu 0 312 9 190 219 0 0 chr1 20899855 20899896 -261293768 + MIR SINE MIR 114 154 -108 1697 158 38 31 chr1 20900540 20900832 -261292832 - AluJb SINE Alu -18 294 1 477 285 27 12 chr1 20902747 20902920 -261290744 + MIR SINE MIR 20 205 -57 280 308 73 59 chr1 20902930 20903203 -261290461 - L2 LINE L2 -1 3271 2995 585 209 22 58 chr1 20903737 20903876 -261289788 + AluJo SINE Alu 3 136 -176 2411 103 0 3 chr1 20903893 20904204 -261289460 + AluSx SINE Alu 1 310 -2 1987 120 92 0 chr1 20904516 20904799 -261288865 + AluSx SINE Alu 1 309 -3 346 250 19 19 chr1 20907166 20907270 -261286394 - MIR SINE MIR -33 229 126 197 258 11 0 chr1 20907401 20907494 -261286170 + CT-rich Low_complexity Low_complexity 1 94 0 192 295 126 11 chr1 20908002 20908097 -261285567 + MER5A DNA MER1_type 7 112 -77 237 309 183 0 chr1 20908667 20908793 -261284871 - MIR SINE MIR -34 228 80 211 244 89 33 chr1 20908757 20908847 -261284817 + MIR SINE MIR 90 184 -78 * 184 29 29 29 chr1 20908996 20909030 -261284634 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2125 101 4 4 chr1 20909033 20909309 -261284355 - AluSx SINE Alu -36 276 1 300 91 0 0 chr1 20909809 20909853 -261283811 + (TC)n Simple_repeat Simple_repeat 1 44 0 231 286 170 11 chr1 20909905 20910087 -261283577 + MIR SINE MIR 4 214 -48 369 0 0 0 chr1 20910454 20910495 -261283169 + (TG)n Simple_repeat Simple_repeat 2 42 0 1562 144 39 27 chr1 20910495 20910752 -261282912 - AluJb SINE Alu -22 290 31 1090 182 0 0 chr1 20910767 20910948 -261282716 - AluJb SINE Alu -12 300 120 245 98 24 0 chr1 20910948 20910989 -261282675 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 706 129 0 58 chr1 20911012 20911151 -261282513 - FLAM_C SINE Alu -2 141 11 499 278 20 13 chr1 20911311 20911462 -261282202 - MIR SINE MIR -62 200 49 819 232 10 25 chr1 20912151 20912349 -261281315 - MIR SINE MIR -9 253 59 195 240 20 20 chr1 20912371 20912421 -261281243 - L2 LINE L2 -85 3187 3138 327 255 49 0 chr1 20912499 20912601 -261281063 + MIR SINE MIR 86 192 -70 882 103 0 22 chr1 20912766 20912902 -261280762 + FLAM_C SINE Alu 1 133 0 3102 160 24 55 chr1 20913222 20913722 -261279942 - L1MB7 LINE L1 -9 6175 5661 2002 128 0 3 chr1 20913722 20914004 -261279660 + AluSx SINE Alu 2 282 -30 1948 138 0 17 chr1 20914004 20914301 -261279363 - AluJb SINE Alu -20 292 1 3102 160 24 55 chr1 20914301 20914505 -261279159 - L1MB7 LINE L1 -521 5663 5492 2560 46 13 7 chr1 20914513 20914815 -261278849 - AluY SINE Alu -7 304 1 2243 119 0 0 chr1 20914819 20915113 -261278551 - AluSx SINE Alu -18 294 1 1174 205 76 6 chr1 20915113 20915263 -261278401 - L1MB7 LINE L1 -943 5203 5065 1766 184 6 19 chr1 20915263 20915577 -261278087 - AluJo SINE Alu -5 307 2 1174 205 76 6 chr1 20915577 20915668 -261277996 - L1MB7 LINE L1 -1081 5065 4982 2074 133 0 0 chr1 20915668 20915961 -261277703 - AluSx SINE Alu -13 299 7 1174 205 76 6 chr1 20915961 20916035 -261277629 - L1MB7 LINE L1 -1164 4982 4865 278 270 90 45 chr1 20916052 20916163 -261277501 - L2 LINE L2 -20 3293 3178 1798 158 13 28 chr1 20916962 20917279 -261276385 - AluJo SINE Alu 0 312 1 240 195 0 0 chr1 20917280 20917321 -261276343 - Alu SINE Alu -258 42 2 2154 128 0 3 chr1 20917496 20917808 -261275856 - AluSx SINE Alu -1 311 1 211 246 43 29 chr1 20918000 20918069 -261275595 + MIR SINE MIR 165 234 -28 397 237 31 0 chr1 20919020 20919117 -261274547 + MIR3 SINE MIR 85 184 -24 342 292 6 45 chr1 20919422 20919584 -261274080 - MIR SINE MIR -72 136 17 244 337 21 0 chr1 20919922 20920017 -261273647 - L2 LINE L2 -6 3266 3170 568 254 29 7 chr1 20920146 20920284 -261273380 - MIR SINE MIR -72 190 50 248 233 142 33 chr1 20920789 20920909 -261272755 + MIR3 SINE MIR 13 145 -63 309 149 0 0 chr1 20921590 20921657 -261272007 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 300 335 149 27 chr1 20921674 20921970 -261271694 - L2 LINE L2 -25 3288 2957 449 258 77 45 chr1 20921991 20922214 -261271450 + MIR SINE MIR 17 256 -6 2207 123 0 0 chr1 20923075 20923376 -261270288 + AluSx SINE Alu 1 301 -11 369 295 58 7 chr1 20923712 20923851 -261269813 + MIR SINE MIR 111 256 -6 21 0 0 0 chr1 20924086 20924107 -261269557 + AT_rich Low_complexity Low_complexity 1 21 0 805 136 8 0 chr1 20924107 20924232 -261269432 - FRAM SINE Alu -51 125 1 219 289 311 21 chr1 20924531 20924766 -261268898 - L2 LINE L2 -49 3223 2921 256 344 31 68 chr1 20925024 20925115 -261268549 - MIR SINE MIR -14 248 164 2294 81 7 0 chr1 20925115 20925410 -261268254 - AluSx SINE Alu -15 297 1 256 344 31 68 chr1 20925410 20925481 -261268183 - MIR SINE MIR -98 164 92 301 311 155 36 chr1 20926298 20926517 -261267147 + MIR SINE MIR 14 258 -4 966 125 0 0 chr1 20926588 20926724 -261266940 + AluJ SINE Alu 1 136 -176 1435 119 123 16 chr1 20927311 20927562 -261266102 - AluJb SINE Alu -13 299 22 813 169 30 2 chr1 20927770 20928040 -261265624 + AluJb SINE Alu 1 322 0 186 204 20 41 chr1 20928182 20928231 -261265433 + MIR SINE MIR 213 260 -2 212 234 325 0 chr1 20928256 20928333 -261265331 + L2 LINE L2 3171 3272 0 366 158 40 26 chr1 20928398 20928474 -261265190 + L1MB8 LINE L1 6102 6178 0 2006 131 10 0 chr1 20928645 20928942 -261264722 - AluSx SINE Alu -12 300 1 871 160 69 0 chr1 20929250 20929394 -261264270 + FRAM SINE Alu 2 155 -11 2243 116 0 0 chr1 20929394 20929704 -261263960 + AluSg SINE Alu 1 310 0 1931 141 0 10 chr1 20930177 20930474 -261263190 + AluSx SINE Alu 1 294 -18 889 137 8 0 chr1 20930492 20930623 -261263041 + FLAM_C SINE Alu 1 132 -1 524 305 74 27 chr1 20930767 20931065 -261262599 - L1MCb LINE L1 -5692 353 42 1863 146 100 10 chr1 20931075 20931211 -261262453 + MER31A LTR ERV1 1 123 -362 1766 157 42 0 chr1 20931211 20931497 -261262167 - AluJb SINE Alu -14 298 1 1863 146 100 10 chr1 20931497 20931771 -261261893 + MER31A LTR ERV1 123 448 -37 2103 84 35 0 chr1 20932098 20932382 -261261282 + AluSp SINE Alu 1 294 -19 189 272 25 49 chr1 20934569 20934650 -261259014 - MIR SINE MIR -41 221 143 916 107 0 0 chr1 20934650 20934771 -261258893 + FLAM_C SINE Alu 1 121 -22 240 114 0 44 chr1 20934816 20934861 -261258803 - MIR SINE MIR -63 145 107 195 231 29 106 chr1 20937657 20937761 -261255903 - MIR3 SINE MIR -110 98 3 361 264 21 15 chr1 20938331 20938448 -261255216 - MIR SINE MIR -72 136 21 234 268 59 9 chr1 20939867 20939977 -261253687 - MIR SINE MIR -79 129 12 316 335 55 82 chr1 20940305 20940598 -261253066 + L1ME LINE L1 748 1032 -5038 2222 97 0 52 chr1 20940911 20941241 -261252423 - AluSq SINE Alu 0 313 1 279 369 102 19 chr1 20941248 20941454 -261252210 + L3 LINE CR1 181 403 -1174 445 350 54 27 chr1 20942009 20942269 -261251395 + L3 LINE CR1 801 1067 -510 237 347 0 0 chr1 20942290 20942362 -261251302 + L3 LINE CR1 1021 1092 -485 485 197 172 25 chr1 20942362 20942484 -261251180 - FLAM_A SINE Alu -2 140 1 233 305 24 113 chr1 20942532 20942745 -261250919 + L3 LINE CR1 1153 1346 -231 1825 156 7 10 chr1 20944713 20945015 -261248649 - AluJb SINE Alu -10 302 2 2322 94 0 0 chr1 20945081 20945378 -261248286 - AluSg SINE Alu -10 300 4 1280 190 20 63 chr1 20945389 20945689 -261247975 - AluJo SINE Alu 0 312 26 278 325 32 16 chr1 20945716 20945839 -261247825 - MIR3 SINE MIR -83 125 1 255 243 189 61 chr1 20947677 20947825 -261245839 + L2 LINE L2 2579 2745 -569 374 255 41 0 chr1 20948203 20948301 -261245363 + MIR SINE MIR 48 149 -113 2403 80 0 3 chr1 20949312 20949613 -261244051 + AluSx SINE Alu 1 300 -12 375 226 212 14 chr1 20950179 20950325 -261243339 - MER5A DNA MER1_type -6 183 9 184 216 0 0 chr1 20950610 20950647 -261243017 + L3 LINE CR1 520 556 -1021 2088 109 0 20 chr1 20950962 20951265 -261242399 - AluSx SINE Alu -15 297 1 239 281 39 26 chr1 20951855 20951955 -261241709 + MIR SINE MIR 30 131 -77 2137 129 7 0 chr1 20952236 20952538 -261241126 - AluSx SINE Alu -8 304 1 237 221 15 134 chr1 20953204 20953384 -261240280 + L1MD3 LINE L1 7891 7995 0 432 290 152 38 chr1 20955022 20955298 -261238366 - L1ME4a LINE L1 -69 6052 5746 310 75 38 0 chr1 20956286 20956339 -261237325 - Alu SINE Alu -2 298 244 1773 128 57 4 chr1 20956339 20956620 -261237044 - AluSg SINE Alu -14 296 1 706 154 98 0 chr1 20956651 20956774 -261236890 + FLAM_C SINE Alu 3 137 -6 1307 143 0 63 chr1 20957184 20957421 -261236243 - AluJo SINE Alu -14 298 77 301 306 0 24 chr1 20958305 20958390 -261235274 + MIR3 SINE MIR 125 207 -1 825 318 157 36 chr1 20958433 20958935 -261234729 - L3 LINE CR1 -89 1488 879 2013 152 10 0 chr1 20958935 20959244 -261234420 - AluJo SINE Alu 0 312 1 825 318 157 36 chr1 20959244 20959429 -261234235 - L3 LINE CR1 -698 879 718 2361 87 0 10 chr1 20959649 20959961 -261233703 + AluSp SINE Alu 1 309 -4 868 126 8 8 chr1 20960265 20960384 -261233280 + FLAM_C SINE Alu 1 122 -180 246 32 0 0 chr1 20960384 20960415 -261233249 + (TA)n Simple_repeat Simple_repeat 2 32 0 2145 131 3 0 chr1 20960507 20960819 -261232845 + AluSq SINE Alu 1 313 0 184 321 38 0 chr1 20961395 20961448 -261232216 + MIR SINE MIR 205 259 -3 398 291 50 7 chr1 20962188 20962329 -261231335 - MIR SINE MIR -114 148 2 843 94 0 107 chr1 20962462 20962611 -261231053 + FLAM_C SINE Alu 1 133 0 896 184 12 12 chr1 20962764 20962927 -261230737 - FRAM SINE Alu 0 166 4 1733 236 75 2 chr1 20964365 20964883 -261228781 - MER68 LTR ERV1 0 562 7 301 351 180 4 chr1 20964916 20965155 -261228509 + L2 LINE L2 3027 3307 -6 268 342 26 0 chr1 20965572 20965686 -261227978 - MIR SINE MIR -118 144 28 1483 158 18 49 chr1 20967775 20968060 -261225604 - AluJo SINE Alu 0 312 37 301 243 116 46 chr1 20969829 20969988 -261223676 + MIR SINE MIR 18 191 -65 332 384 41 0 chr1 20970788 20970934 -261222730 + L2 LINE L2 3162 3313 0 535 245 77 13 chr1 20970941 20971096 -261222568 + MIR SINE MIR 28 192 -70 400 306 46 20 chr1 20971415 20971588 -261222076 + MIR SINE MIR 34 211 -51 455 181 105 23 chr1 20971636 20971769 -261221895 + MER58C DNA MER1_type 67 210 -5 343 285 185 20 chr1 20972119 20972326 -261221338 + MIR SINE MIR 9 241 -21 490 313 52 13 chr1 20972922 20973152 -261220512 + MIR SINE MIR 21 259 -3 2350 119 0 0 chr1 20973188 20973500 -261220164 - AluSx SINE Alu 0 312 1 756 239 12 6 chr1 20974686 20974853 -261218811 + MER3 DNA MER1_type 5 125 -84 305 260 19 29 chr1 20974858 20974962 -261218702 + L2 LINE L2 3191 3293 -20 2320 103 0 3 chr1 20974989 20975291 -261218373 + AluSg SINE Alu 1 301 -9 345 200 31 0 chr1 20975686 20975751 -261217913 - AluJ/FRAM SINE Alu -15 287 221 1005 83 0 8 chr1 20975786 20975918 -261217746 - AluSg/x SINE Alu -4 306 176 359 276 8 16 chr1 20977283 20977406 -261216258 + MIR SINE MIR 18 139 -69 1481 87 0 73 chr1 20978333 20978551 -261215113 - AluSp SINE Alu 0 313 112 681 172 8 8 chr1 20980898 20981026 -261212638 - FLAM_A SINE Alu -4 138 11 390 272 48 24 chr1 20981399 20981524 -261212140 + L2 LINE L2 3184 3311 -2 236 303 15 0 chr1 20981681 20981747 -261211917 + L2 LINE L2 3198 3264 -8 1715 176 4 0 chr1 20981807 20982074 -261211590 - AluJo SINE Alu -31 281 14 947 112 0 0 chr1 20984337 20984462 -261209202 - AluSq/x SINE Alu -188 125 1 1588 125 4 42 chr1 20985248 20985512 -261208152 + AluJo SINE Alu 57 310 -2 2488 73 3 0 chr1 20985780 20986082 -261207582 - AluY SINE Alu -6 305 3 686 141 31 16 chr1 20986084 20986212 -261207452 - FLAM_C SINE Alu -3 140 11 441 176 0 0 chr1 20986225 20986299 -261207365 + Tigger7 DNA MER2_type 2414 2487 0 21 36 0 0 chr1 20986596 20986624 -261207040 + GC_rich Low_complexity Low_complexity 1 28 0 267 228 0 20 chr1 20986700 20986791 -261206873 - MIR SINE MIR -88 120 33 396 300 40 84 chr1 20987253 20987480 -261206184 + MIR SINE MIR 46 262 0 943 136 41 7 chr1 20987529 20987676 -261205988 + FAM SINE Alu 21 172 -13 2624 57 0 19 chr1 20987680 20987996 -261205668 + AluY SINE Alu 1 310 -1 255 161 54 0 chr1 20987997 20988053 -261205611 - MIR3 SINE MIR -46 162 104 892 172 31 0 chr1 20988357 20988520 -261205144 - MER3 DNA MER1_type -86 123 3 195 313 21 21 chr1 20989781 20989877 -261203787 + L2 LINE L2 3016 3111 -161 789 164 0 8 chr1 20989938 20990072 -261203592 + FLAM_C SINE Alu 1 133 0 2208 135 0 3 chr1 20990105 20990408 -261203256 + AluSx SINE Alu 1 302 -10 328 151 0 0 chr1 20990443 20990496 -261203168 + AluJ/FRAM SINE Alu 221 273 -29 809 268 153 6 chr1 20990566 20990906 -261202758 + L2 LINE L2 2181 2570 -744 273 306 87 50 chr1 20991398 20991545 -261202119 - MIR SINE MIR -65 143 16 297 232 152 0 chr1 20991743 20991842 -261201822 + L2 LINE L2 2992 3105 -167 207 290 87 0 chr1 20992148 20992217 -261201447 + L2 LINE L2 3183 3257 -56 218 260 0 0 chr1 20992269 20992319 -261201345 + GA-rich Low_complexity Low_complexity 4 53 0 332 311 92 19 chr1 20993996 20994202 -261199462 - MIR SINE MIR -22 240 20 397 267 16 96 chr1 20994620 20994807 -261198857 + MIR SINE MIR 59 230 -32 553 279 89 6 chr1 20995151 20995330 -261198334 + L2 LINE L2 3119 3312 -1 290 304 0 0 chr1 20995634 20995703 -261197961 + MIR SINE MIR 31 99 -109 374 235 102 0 chr1 20996266 20996364 -261197300 + MER53 DNA DNA 1 108 -81 2290 95 3 10 chr1 20996371 20996667 -261196997 - AluY SINE Alu -17 294 1 270 362 54 7 chr1 20997781 20997930 -261195734 - MIR SINE MIR -29 233 78 2095 144 7 7 chr1 20998842 20999148 -261194516 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr1 20999466 20999489 -261194175 + AT_rich Low_complexity Low_complexity 1 23 0 1433 173 0 21 chr1 20999499 20999742 -261193922 + AluJb SINE Alu 55 292 -20 459 244 184 35 chr1 21000195 21000396 -261193268 + MIR SINE MIR 14 244 -18 313 248 305 0 chr1 21000462 21000603 -261193061 - MIR SINE MIR -27 235 52 285 287 258 0 chr1 21001889 21002056 -261191608 - MIR SINE MIR -3 259 50 276 298 169 0 chr1 21002300 21002424 -261191240 - MIR3 SINE MIR -32 176 32 275 156 0 0 chr1 21002756 21002801 -261190863 + MER103 DNA DNA 55 99 -67 386 258 168 26 chr1 21003176 21003331 -261190333 + MIR SINE MIR 12 188 -74 611 139 0 146 chr1 21004674 21004811 -261188853 + FLAM_C SINE Alu 2 118 -25 1433 155 4 42 chr1 21005439 21005703 -261187961 + AluJo SINE Alu 57 310 -2 1882 181 3 0 chr1 21006670 21006980 -261186684 + AluSx SINE Alu 2 312 0 395 253 116 16 chr1 21006995 21007185 -261186479 + MER102b DNA MER1_type 108 316 -25 1011 226 88 25 chr1 21007843 21008161 -261185503 + Charlie1 DNA MER1_type 775 1112 -1649 1678 177 3 48 chr1 21009235 21009545 -261184119 - AluJb SINE Alu -16 296 1 22 0 0 0 chr1 21009651 21009673 -261183991 + AT_rich Low_complexity Low_complexity 1 22 0 391 311 150 0 chr1 21010496 21010689 -261182975 + MIR SINE MIR 29 250 -12 966 170 33 6 chr1 21010995 21011177 -261182487 + MER20 DNA MER1_type 33 219 0 1955 51 42 4 chr1 21011303 21011576 -261182088 + AluY SINE Alu 35 316 0 2040 153 0 10 chr1 21012328 21012506 -261181158 - AluJo SINE Alu -1 311 136 1821 147 42 3 chr1 21012506 21012791 -261180873 - AluJb SINE Alu -16 296 1 2040 153 0 10 chr1 21012791 21012926 -261180738 - AluJo SINE Alu -176 136 1 1655 111 0 0 chr1 21013198 21013414 -261180250 + 7SLRNA srpRNA srpRNA 1 216 -104 289 279 221 0 chr1 21013430 21013566 -261180098 + MIR3 SINE MIR 16 181 -27 207 0 0 0 chr1 21014665 21014688 -261178976 + (T)n Simple_repeat Simple_repeat 1 23 0 197 190 38 63 chr1 21014945 21015024 -261178640 + L2 LINE L2 3232 3308 -5 396 299 62 52 chr1 21015191 21015402 -261178262 + MIR SINE MIR 2 214 -48 2149 142 0 0 chr1 21015667 21015970 -261177694 - AluSx SINE Alu -9 303 1 1841 128 4 8 chr1 21015973 21016239 -261177425 - AluSx SINE Alu -4 308 44 183 327 164 10 chr1 21016535 21016639 -261177025 + L2 LINE L2 2607 2726 -588 229 241 77 0 chr1 21016936 21017016 -261176648 + L2 LINE L2 3161 3259 -18 2372 101 0 3 chr1 21017159 21017466 -261176198 - AluSq SINE Alu -7 306 1 206 246 18 18 chr1 21019394 21019451 -261174213 + L3 LINE CR1 581 637 -940 190 317 0 33 chr1 21020389 21020449 -261173215 - MIR3 SINE MIR 0 208 151 550 163 10 0 chr1 21020975 21021073 -261172591 - L1MB7 LINE L1 -7 6177 6079 1889 131 4 4 chr1 21021074 21021342 -261172322 + AluSq SINE Alu 1 268 -45 537 214 87 70 chr1 21022738 21022967 -261170697 + MIR SINE MIR 30 262 0 383 148 222 0 chr1 21022988 21023069 -261170595 + MER6B DNA MER2_type 1 99 -177 2024 99 16 51 chr1 21023261 21023573 -261170091 - AluSx SINE Alu -11 301 1 294 24 24 0 chr1 21025182 21025224 -261168440 - AluY SINE Alu -258 43 1 2121 124 20 0 chr1 21025258 21025556 -261168108 + AluSx SINE Alu 5 308 -4 546 258 178 62 chr1 21025556 21025831 -261167833 - L2 LINE L2 -1004 2310 2004 22 35 0 0 chr1 21025994 21026023 -261167641 + AT_rich Low_complexity Low_complexity 1 29 0 1567 167 34 4 chr1 21026023 21026292 -261167372 + AluJo SINE Alu 1 277 -35 378 0 0 0 chr1 21026299 21026341 -261167323 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 779 202 0 0 chr1 21026345 21026474 -261167190 - AluJb SINE Alu -181 131 3 1401 304 153 48 chr1 21026564 21026801 -261166863 + L2 LINE L2 601 812 -2502 1590 183 63 14 chr1 21026801 21027085 -261166579 + AluJo SINE Alu 1 298 -14 1401 304 153 48 chr1 21027085 21027343 -261166321 + L2 LINE L2 812 1042 -2272 2088 149 3 0 chr1 21027343 21027652 -261166012 + AluSx SINE Alu 1 310 -2 1401 304 153 48 chr1 21027652 21028386 -261165278 + L2 LINE L2 1042 1960 -1354 192 324 44 0 chr1 21028428 21028496 -261165168 + L2 LINE L2 3238 3308 -5 418 277 130 43 chr1 21028733 21028826 -261164838 - MIR SINE MIR 0 262 178 1921 155 40 0 chr1 21028826 21029122 -261164542 - AluJb SINE Alu -4 308 1 418 277 130 43 chr1 21029122 21029259 -261164405 - MIR SINE MIR -84 178 12 196 323 46 0 chr1 21029308 21029373 -261164291 + L2 LINE L2 3238 3305 -8 2156 118 10 3 chr1 21029848 21030145 -261163519 + AluSx SINE Alu 1 299 -13 241 149 43 0 chr1 21030482 21030529 -261163135 - MER103 DNA DNA -11 155 107 708 278 129 72 chr1 21030536 21030840 -261162824 + L2 LINE L2 1584 1869 -1445 799 121 0 50 chr1 21030840 21030980 -261162684 - FLAM_C SINE Alu 0 133 1 708 278 129 72 chr1 21030980 21031273 -261162391 + L2 LINE L2 1869 2215 -1099 247 317 118 57 chr1 21031991 21032237 -261161427 + L2 LINE L2 2979 3239 -33 592 228 53 69 chr1 21032457 21032545 -261161119 + L1M4 LINE L1 4342 4430 -1716 2496 61 3 3 chr1 21032545 21032840 -261160824 - AluSp SINE Alu -18 295 1 592 228 53 69 chr1 21032840 21033054 -261160610 + L1M4 LINE L1 4430 4639 -1507 1888 149 24 14 chr1 21033054 21033343 -261160321 - AluJo SINE Alu -7 305 14 2590 58 3 10 chr1 21034156 21034469 -261159195 - AluY SINE Alu 0 311 1 280 247 37 0 chr1 21034794 21034875 -261158789 + Tigger7 DNA MER2_type 8 91 -614 * 1273 119 70 4 chr1 21034856 21035083 -261158581 + Tigger7 DNA MER2_type 2246 2487 0 240 329 0 14 chr1 21035293 21035363 -261158301 - MIR SINE MIR -181 81 13 206 315 27 0 chr1 21035384 21035457 -261158207 - MIR SINE MIR -89 119 45 1505 155 4 0 chr1 21035812 21036051 -261157613 - AluJb SINE Alu -9 303 64 396 0 0 0 chr1 21036266 21036310 -261157354 + (TG)n Simple_repeat Simple_repeat 2 45 0 543 193 76 23 chr1 21036581 21036752 -261156912 + MER113 DNA MER1_type? 38 217 -304 309 109 0 0 chr1 21037451 21037497 -261156167 + (CCCTG)n Simple_repeat Simple_repeat 4 49 0 323 235 111 20 chr1 21037755 21037908 -261155756 - L1ME4a LINE L1 0 6121 5955 1019 156 0 0 chr1 21037941 21038095 -261155569 - FRAM SINE Alu -12 154 1 1014 183 203 12 chr1 21038877 21038970 -261154694 + AluJo SINE Alu 2 76 -236 207 0 0 0 chr1 21038970 21038993 -261154671 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1014 183 203 12 chr1 21038993 21039150 -261154514 + AluJo SINE Alu 76 300 -12 491 182 29 193 chr1 21039984 21040264 -261153400 + MIR SINE MIR 28 261 -1 1758 211 55 0 chr1 21040555 21040901 -261152763 - MLT1A1 LTR MaLR 0 365 1 1596 222 82 37 chr1 21040995 21041460 -261152204 - L1ME1 LINE L1 -2 6164 5675 2674 43 0 3 chr1 21041460 21041762 -261151902 + AluY SINE Alu 1 301 -10 1596 222 82 37 chr1 21041762 21041783 -261151881 - L1ME1 LINE L1 -491 5675 5656 1964 154 16 38 chr1 21041836 21042154 -261151510 - AluSx SINE Alu -1 311 1 2020 155 3 0 chr1 21042434 21042730 -261150934 - AluJb SINE Alu -15 297 1 369 289 66 13 chr1 21042733 21042885 -261150779 - MIR SINE MIR -56 206 47 558 241 126 6 chr1 21043596 21043770 -261149894 - MIR SINE MIR -54 208 14 450 111 25 37 chr1 21044156 21044237 -261149427 + MER116 DNA Mariner 1 80 0 1256 185 3 96 chr1 21044475 21044598 -261149066 + AluJo SINE Alu 1 134 -178 534 31 0 0 chr1 21044598 21044662 -261149002 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 1256 185 3 96 chr1 21044662 21044851 -261148813 + AluJo SINE Alu 134 284 -28 221 86 57 0 chr1 21045284 21045319 -261148345 + MIR SINE MIR 108 144 -64 534 202 65 19 chr1 21045367 21045521 -261148143 + MIR SINE MIR 25 186 -62 803 150 0 39 chr1 21046191 21046318 -261147346 - FLAM_A SINE Alu -10 123 2 191 265 241 0 chr1 21046640 21046723 -261146941 + MIR SINE MIR 89 191 -71 242 250 90 30 chr1 21046766 21046866 -261146798 - MIR SINE MIR 0 262 157 294 259 25 12 chr1 21047263 21047344 -261146320 + MIR SINE MIR 114 195 -67 2135 139 0 7 chr1 21047363 21047666 -261145998 + AluSg SINE Alu 1 301 -9 396 323 130 10 chr1 21048705 21048897 -261144767 - MIR SINE MIR -27 235 21 360 286 9 18 chr1 21048924 21049036 -261144628 - L2 LINE L2 -10 3303 3193 335 271 65 9 chr1 21049399 21049506 -261144158 - MIR SINE MIR -1 261 149 217 245 138 24 chr1 21049849 21049977 -261143687 + MIR3 SINE MIR 8 157 -51 246 169 325 12 chr1 21050319 21050402 -261143262 + L2 LINE L2 3183 3291 -22 1464 163 39 19 chr1 21051563 21051821 -261141843 - AluJo SINE Alu -49 263 1 2455 75 0 0 chr1 21051865 21052159 -261141505 - AluSg1 SINE Alu -10 299 6 943 199 91 14 chr1 21052194 21052481 -261141183 + L1M4 LINE L1 4622 4930 -1216 1388 164 0 94 chr1 21052483 21052660 -261141004 - AluJo SINE Alu -3 309 170 2044 134 3 7 chr1 21052660 21052958 -261140706 - AluJb SINE Alu -7 305 9 1388 164 0 94 chr1 21052958 21053079 -261140585 - AluJo SINE Alu -142 170 39 892 194 63 8 chr1 21053080 21053332 -261140332 + L1M4 LINE L1 4932 5197 -949 2084 143 3 0 chr1 21054003 21054303 -261139361 - AluJo SINE Alu -10 302 2 759 255 174 24 chr1 21054431 21054729 -261138935 + MLT1J2 LTR MaLR 97 439 -11 2253 72 44 17 chr1 21054815 21055108 -261138556 + AluY SINE Alu 1 301 -10 200 288 36 85 chr1 21055145 21055277 -261138387 - MIR SINE MIR -78 130 3 2062 137 0 7 chr1 21055753 21055764 -261137900 - AluSq SINE Alu -15 298 288 351 0 0 0 chr1 21055764 21055803 -261137861 + (TG)n Simple_repeat Simple_repeat 2 40 0 2062 137 0 7 chr1 21055803 21056091 -261137573 - AluSq SINE Alu -25 288 1 2052 149 0 3 chr1 21056091 21056393 -261137271 - AluSq SINE Alu -12 301 1 478 163 225 4 chr1 21056395 21056544 -261137120 + MSTA LTR MaLR 177 360 -68 905 191 12 0 chr1 21056547 21056709 -261136955 + LOR1-int LTR ERV1 5490 5653 -2467 1272 170 28 25 chr1 21056711 21056994 -261136670 + LTR8A LTR ERV1 386 669 -58 2187 133 10 0 chr1 21057084 21057393 -261136271 + AluSx SINE Alu 1 312 0 1989 123 0 11 chr1 21057401 21057670 -261135994 + AluSx SINE Alu 2 267 -45 22 0 0 0 chr1 21058254 21058276 -261135388 + GC_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr1 21058285 21058325 -261135339 + GC_rich Low_complexity Low_complexity 1 40 0 201 108 0 0 chr1 21058420 21058457 -261135207 + (CGCGG)n Simple_repeat Simple_repeat 5 41 0 231 114 0 0 chr1 21058694 21058729 -261134935 + (CAGCC)n Simple_repeat Simple_repeat 5 39 0 341 208 78 0 chr1 21058849 21058926 -261134738 - L2 LINE L2 -19 3294 3212 2374 60 25 0 chr1 21058992 21059277 -261134387 + AluSc SINE Alu 1 292 -17 183 100 0 0 chr1 21059382 21059412 -261134252 + (TC)n Simple_repeat Simple_repeat 1 30 0 501 289 52 0 chr1 21059705 21059840 -261133824 - L2 LINE L2 -11 3302 3161 993 101 22 7 chr1 21059850 21059988 -261133676 + AluSq/x SINE Alu 1 140 -173 2508 48 3 0 chr1 21059989 21060279 -261133385 + AluY SINE Alu 1 291 -20 677 257 99 118 chr1 21060343 21060943 -261132721 - L2 LINE L2 -254 3059 2449 1932 123 22 51 chr1 21060943 21061259 -261132405 - AluJo SINE Alu -5 307 1 1919 140 71 14 chr1 21061260 21061624 -261132040 - L1MC1 LINE L1 -9 6324 5940 677 257 99 118 chr1 21061624 21061763 -261131901 - L2 LINE L2 -864 2449 2316 2263 126 0 0 chr1 21061763 21062064 -261131600 - AluSx SINE Alu -11 301 1 677 257 99 118 chr1 21062064 21062076 -261131588 - L2 LINE L2 -997 2316 2305 2331 89 0 52 chr1 21062076 21062400 -261131264 - AluSx SINE Alu -5 307 1 27 29 0 0 chr1 21062469 21062503 -261131161 + AT_rich Low_complexity Low_complexity 1 34 0 212 204 19 0 chr1 21062527 21062581 -261131083 + (TA)n Simple_repeat Simple_repeat 1 55 0 303 253 69 11 chr1 21062605 21062692 -261130972 + L1MC4 LINE L1 6612 6703 -1339 278 171 73 16 chr1 21062700 21062823 -261130841 + (TA)n Simple_repeat Simple_repeat 2 131 0 330 276 46 0 chr1 21062824 21062911 -261130753 - L1MC4 LINE L1 -1338 6704 6614 309 244 23 23 chr1 21062837 21062923 -261130741 + L1MC4 LINE L1 6618 6703 -1339 * 213 214 22 22 chr1 21062930 21063019 -261130645 + (TA)n Simple_repeat Simple_repeat 1 89 0 1196 155 58 0 chr1 21063023 21063249 -261130415 - L1MB3 LINE L1 -25 6158 5920 660 143 86 24 chr1 21063249 21063378 -261130286 - MER33 DNA MER1_type -266 58 1 721 132 0 0 chr1 21064027 21064133 -261129531 + AluSg/x SINE Alu 196 301 -8 535 197 181 48 chr1 21064204 21064392 -261129272 - MIR SINE MIR -48 214 2 242 287 176 80 chr1 21064523 21064711 -261128953 - L2 LINE L2 -23 3249 3044 314 288 82 60 chr1 21064802 21064986 -261128678 - L2 LINE L2 -512 2802 2615 1880 148 0 0 chr1 21065493 21065763 -261127901 - AluSx SINE Alu -42 270 1 192 267 217 17 chr1 21065764 21065884 -261127780 + L2 LINE L2 2682 2825 -489 2285 113 3 0 chr1 21065908 21066219 -261127445 - AluSx SINE Alu 0 312 1 380 258 295 11 chr1 21066471 21066661 -261127003 - MIR SINE MIR -3 259 16 384 311 36 36 chr1 21067172 21067339 -261126325 - MIR SINE MIR -56 206 40 3289 148 58 0 chr1 21067490 21068058 -261125606 - Tigger7 DNA MER2_type -1878 609 9 2403 85 0 13 chr1 21069078 21069395 -261124269 + AluSq SINE Alu 1 313 0 424 200 0 0 chr1 21069474 21069554 -261124110 - MER116 DNA Mariner 0 80 1 325 328 107 20 chr1 21069931 21070175 -261123489 - L1ME LINE L1 -473 5648 5384 2070 142 7 0 chr1 21071522 21071818 -261121846 + AluSx SINE Alu 1 298 -14 384 311 36 36 chr1 21073053 21073220 -261120444 + MIR SINE MIR 40 206 -56 380 258 295 11 chr1 21073731 21073921 -261119743 + MIR SINE MIR 16 259 -3 2285 113 3 0 chr1 21074173 21074484 -261119180 + AluSx SINE Alu 1 312 0 2191 135 0 3 chr1 21074629 21074940 -261118724 + AluSx SINE Alu 1 310 -2 304 363 24 8 chr1 21075292 21075416 -261118248 - L2 LINE L2 -16 3297 3172 23 33 0 0 chr1 21075761 21075791 -261117873 + AT_rich Low_complexity Low_complexity 1 30 0 193 259 0 52 chr1 21075827 21075885 -261117779 + L2 LINE L2 3216 3270 -2 774 254 97 0 chr1 21077074 21077259 -261116405 + MIR SINE MIR 28 230 -32 1374 159 13 25 chr1 21077265 21077504 -261116160 + MER46A DNA MER2_type 1 236 0 1992 162 0 9 chr1 21077559 21077874 -261115790 - AluJo SINE Alu 0 312 1 261 146 0 0 chr1 21077884 21077932 -261115732 + (TC)n Simple_repeat Simple_repeat 1 48 0 2011 149 14 0 chr1 21077932 21078227 -261115437 - AluSx SINE Alu -13 299 1 1501 101 0 68 chr1 21080198 21080417 -261113247 + AluSx SINE Alu 1 204 -108 216 0 0 0 chr1 21080436 21080460 -261113204 + (A)n Simple_repeat Simple_repeat 1 24 0 331 247 78 65 chr1 21080840 21080994 -261112670 - L1ME4a LINE L1 -35 6086 5931 301 248 165 16 chr1 21081137 21081258 -261112406 - L1ME4a LINE L1 -439 5682 5544 766 206 126 32 chr1 21081847 21082094 -261111570 - L1MB8 LINE L1 0 6178 5909 240 250 177 21 chr1 21082197 21082293 -261111371 + L1ME4a LINE L1 6010 6120 -1 248 248 18 53 chr1 21082324 21082437 -261111227 - L1ME4a LINE L1 -45 6076 5968 371 284 106 15 chr1 21082466 21082671 -261110993 - L1ME4a LINE L1 -225 5896 5676 2263 128 0 0 chr1 21082691 21082997 -261110667 + AluSx SINE Alu 1 306 -6 1516 96 0 0 chr1 21083561 21083758 -261109906 - AluSg/x SINE Alu -15 295 99 210 281 0 0 chr1 21083976 21084033 -261109631 + MIR SINE MIR 85 141 -121 195 42 0 0 chr1 21084105 21084129 -261109535 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2063 129 0 28 chr1 21084312 21084629 -261109035 - AluJo SINE Alu -4 308 1 226 267 53 0 chr1 21085295 21085370 -261108294 - L1MC5 LINE L1 -83 7878 7800 2401 92 0 3 chr1 21085705 21086008 -261107656 - AluSx SINE Alu -10 302 1 2604 68 0 0 chr1 21086644 21086955 -261106709 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 21087313 21087334 -261106330 + AT_rich Low_complexity Low_complexity 1 21 0 1100 143 7 0 chr1 21087397 21087551 -261106113 + AluJb SINE Alu 1 155 -157 270 320 196 19 chr1 21087964 21088327 -261105337 + L3 LINE CR1 1148 1574 -3 255 309 11 11 chr1 21090950 21091044 -261102620 - MIR SINE MIR -13 249 156 530 167 0 0 chr1 21091047 21091131 -261102533 - Tigger7 DNA MER2_type 0 2487 2404 2861 165 58 2 chr1 21091133 21091655 -261102009 - Tigger7 DNA MER2_type -182 551 1 610 286 7 7 chr1 21091655 21091795 -261101869 - MIR SINE MIR -108 154 15 566 282 154 14 chr1 21091940 21092160 -261101504 + MIR SINE MIR 12 262 0 1774 123 44 0 chr1 21092828 21093079 -261100585 - AluJb SINE Alu -43 269 8 653 200 0 0 chr1 21093185 21093290 -261100374 - FLAM_C SINE Alu -37 106 2 490 295 44 26 chr1 21093312 21093549 -261100115 - MIR SINE MIR -14 248 9 350 237 85 10 chr1 21094964 21095094 -261098570 + MIR SINE MIR 42 182 -62 22 0 0 0 chr1 21095229 21095251 -261098413 + AT_rich Low_complexity Low_complexity 1 22 0 1828 181 3 13 chr1 21095269 21095572 -261098092 - AluSx SINE Alu -12 300 1 1574 148 130 4 chr1 21095660 21095930 -261097734 - AluJo SINE Alu 0 312 9 2442 60 0 66 chr1 21095982 21096315 -261097349 - AluY SINE Alu 0 311 1 715 133 210 56 chr1 21096362 21096557 -261097107 - MER46A DNA MER2_type -11 225 1 260 211 0 67 chr1 21099217 21099286 -261094378 + L1MB4 LINE L1 6069 6132 -48 2173 107 6 49 chr1 21099286 21099612 -261094052 - AluSx SINE Alu 0 312 1 260 211 0 67 chr1 21099612 21099632 -261094032 + L1MB4 LINE L1 6132 6152 -28 627 205 41 29 chr1 21100864 21101035 -261092629 - MLT1G1 LTR MaLR 0 567 395 690 248 19 48 chr1 21101136 21101387 -261092277 - MLT1G1 LTR MaLR -377 213 5 293 283 92 64 chr1 21102240 21102413 -261091251 + L2 LINE L2 3136 3313 0 15176 85 2 1 chr1 21102572 21104612 -261089052 - HERVK9 LTR ERVK -2537 3379 1337 3138 116 13 20 chr1 21104606 21105129 -261088535 - HERVK9 LTR ERVK -5309 607 1 * 3520 108 12 6 chr1 21105129 21105637 -261088027 - MER9 LTR ERVK 0 511 1 1050 178 16 5 chr1 21105668 21105839 -261087825 + AluJo SINE Alu 107 275 -37 399 21 0 0 chr1 21105839 21105887 -261087777 + (TC)n Simple_repeat Simple_repeat 2 49 0 279 0 0 0 chr1 21105886 21105917 -261087747 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1050 178 16 5 chr1 21105887 21105936 -261087728 + AluJo SINE Alu 275 299 -13 1822 151 3 14 chr1 21105936 21106221 -261087443 + AluJb SINE Alu 14 295 -17 35 24 0 0 chr1 21106221 21106263 -261087401 + AT_rich Low_complexity Low_complexity 1 42 0 1446 205 50 14 chr1 21106263 21106381 -261087283 + L1M4 LINE L1 4382 4494 -1652 2230 109 0 0 chr1 21106381 21106685 -261086979 + AluSx SINE Alu 1 304 0 1446 205 50 14 chr1 21106685 21106989 -261086675 + L1M4 LINE L1 4494 4820 -1326 2392 100 13 0 chr1 21107017 21107326 -261086338 + AluSp SINE Alu 1 313 0 2609 87 34 11 chr1 21107885 21108241 -261085423 + THE1B LTR MaLR 1 364 0 1387 191 32 12 chr1 21108311 21108562 -261085102 - AluJo SINE Alu -56 256 1 680 160 66 0 chr1 21109027 21109133 -261084531 + AluJ SINE Alu 3 115 -197 1485 120 214 13 chr1 21109133 21109441 -261084223 + MSTA LTR MaLR 2 371 -57 740 229 0 7 chr1 21109444 21109588 -261084076 + AluSq/x SINE Alu 2 144 -169 1073 113 14 0 chr1 21109695 21109837 -261083827 - AluSq/x SINE Alu -169 144 1 1277 166 0 19 chr1 21109876 21110081 -261083583 + AluJ SINE Alu 110 310 -2 2348 72 7 3 chr1 21110239 21110531 -261083133 - AluSq SINE Alu -20 293 1 2268 120 0 0 chr1 21111092 21111401 -261082263 + AluSg1 SINE Alu 1 309 0 2159 43 85 0 chr1 21111404 21111662 -261082002 + AluY SINE Alu 3 282 -29 2032 128 47 0 chr1 21112013 21112310 -261081354 + AluJb SINE Alu 1 311 -1 313 145 48 0 chr1 21112394 21112456 -261081208 - MSTA LTR MaLR 0 428 364 644 160 56 24 chr1 21112568 21112693 -261080971 - FLAM_C SINE Alu -4 129 1 1422 215 25 30 chr1 21112693 21113097 -261080567 - Charlie4a DNA MER1_type -68 440 39 815 265 113 16 chr1 21113246 21113555 -261080109 + L2 LINE L2 2332 2670 -644 926 129 0 41 chr1 21113555 21113702 -261079962 - FLAM_C SINE Alu -2 141 1 1991 131 38 0 chr1 21113716 21114006 -261079658 - AluJb SINE Alu -11 301 1 269 167 0 0 chr1 21114008 21114050 -261079614 + L2 LINE L2 2659 2700 -614 802 278 0 23 chr1 21114059 21114275 -261079389 + L2 LINE L2 2856 3066 -247 1927 132 0 0 chr1 21114293 21114550 -261079114 - AluSx SINE Alu -55 257 1 439 314 63 0 chr1 21114767 21114942 -261078722 + MIR SINE MIR 12 197 -65 2461 82 0 0 chr1 21114946 21115240 -261078424 + AluSg SINE Alu 1 294 -16 2169 137 0 19 chr1 21115257 21115572 -261078092 + AluJb SINE Alu 1 309 -3 827 138 8 0 chr1 21116945 21117068 -261076596 - FLAM_C SINE Alu -7 136 13 1514 151 0 4 chr1 21117420 21117645 -261076019 + AluJb SINE Alu 89 312 0 432 218 73 24 chr1 21117838 21117962 -261075702 - LTR67 LTR ERVL 0 557 428 243 206 10 155 chr1 21118008 21118038 -261075626 + MER91C DNA MER1_type 36 69 -71 419 142 92 231 chr1 21118038 21118107 -261075557 + MER58A DNA MER1_type 1 78 -2342 2229 125 0 22 chr1 21118107 21118426 -261075238 + AluSx SINE Alu 1 312 0 419 142 92 231 chr1 21118426 21118616 -261075048 + MER58A DNA MER1_type 78 224 0 243 206 10 155 chr1 21118616 21118682 -261074982 + MER91C DNA MER1_type 69 118 -22 4692 166 69 33 chr1 21119103 21120137 -261073527 - MER11C LTR ERVK 0 1071 1 554 197 6 109 chr1 21120147 21120330 -261073334 + L2 LINE L2 2538 2701 -613 525 59 15 0 chr1 21120363 21120431 -261073233 - MSTA LTR MaLR 0 428 360 1722 161 3 0 chr1 21120433 21120718 -261072946 + AluSx SINE Alu 5 290 -22 31 179 0 0 chr1 21120825 21120881 -261072783 + GC_rich Low_complexity Low_complexity 1 56 0 1191 159 44 9 chr1 21120948 21121174 -261072490 - MSTA LTR MaLR -160 268 35 1864 99 51 0 chr1 21121174 21121447 -261072217 + AluSx SINE Alu 1 287 -25 1267 258 120 2 chr1 21121459 21122002 -261071662 + L2 LINE L2 2691 3311 -2 988 158 6 6 chr1 21122281 21122445 -261071219 - AluJo/FRAM SINE Alu -2 300 137 1879 89 3 98 chr1 21122448 21122797 -261070867 - AluSx SINE Alu 0 302 1 356 314 95 0 chr1 21122816 21122921 -261070743 - L2 LINE L2 -5 3267 3153 825 176 0 0 chr1 21123015 21123157 -261070507 + FLAM_C SINE Alu 1 142 -1 2280 105 0 0 chr1 21123178 21123484 -261070180 + AluSx SINE Alu 1 306 -6 1864 98 4 11 chr1 21123615 21123916 -261069748 + AluSx SINE Alu 19 317 0 192 94 57 75 chr1 21123919 21123972 -261069692 - L2 LINE L2 -4 3309 3258 1756 155 3 13 chr1 21124198 21124501 -261069163 - AluJb SINE Alu -12 300 1 673 206 75 0 chr1 21124603 21124749 -261068915 + MER2 DNA MER2_type 1 157 -188 510 145 0 0 chr1 21124769 21124845 -261068819 - FLAM_A SINE Alu -61 81 6 591 49 37 0 chr1 21124848 21124930 -261068734 + MER2 DNA MER2_type 122 206 -139 276 111 0 0 chr1 21125027 21125072 -261068592 + (TG)n Simple_repeat Simple_repeat 2 46 0 482 219 169 0 chr1 21125859 21126019 -261067645 - MIR SINE MIR -74 188 2 190 163 82 20 chr1 21126184 21126233 -261067431 - L2 LINE L2 0 3313 3262 2288 88 0 0 chr1 21126433 21126729 -261066935 + AluSq SINE Alu 1 296 -17 1471 184 0 11 chr1 21127572 21127839 -261065825 + AluJb SINE Alu 22 285 -27 1806 118 0 4 chr1 21127858 21128112 -261065552 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 21128121 21128165 -261065499 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 813 206 0 13 chr1 21128167 21128322 -261065342 - FAM SINE Alu -27 158 6 1379 161 4 4 chr1 21128369 21128605 -261065059 - AluJo SINE Alu -76 236 1 1252 194 56 0 chr1 21128723 21128955 -261064709 - AluJb SINE Alu -67 245 1 1985 133 7 0 chr1 21128985 21129294 -261064370 + AluSx SINE Alu 1 311 -1 289 215 148 20 chr1 21129307 21129456 -261064208 - L1MC5 LINE L1 -244 7717 7550 2219 88 3 0 chr1 21129545 21129841 -261063823 - AluSx SINE Alu -15 297 1 365 229 30 38 chr1 21129842 21129973 -261063691 - L1MC5 LINE L1 -564 7397 7268 1326 198 74 7 chr1 21130012 21130295 -261063369 + MLT2D LTR ERVL 93 394 -20 337 233 97 19 chr1 21130338 21130441 -261063223 - L1ME4a LINE L1 -193 5928 5818 868 146 0 29 chr1 21130500 21130637 -261063027 + AluJo SINE Alu 1 133 -169 858 201 6 11 chr1 21130767 21130946 -261062718 + AluJo SINE Alu 135 312 0 2094 110 0 10 chr1 21130954 21131255 -261062409 + AluSx SINE Alu 1 298 -14 343 217 46 92 chr1 21131275 21131427 -261062237 - L1ME4a LINE L1 -229 5892 5748 924 118 0 7 chr1 21132400 21132535 -261061129 + AluSq/x SINE Alu 1 134 -179 381 314 70 92 chr1 21132632 21132802 -261060862 - L2 LINE L2 -9 3263 3091 1881 128 13 13 chr1 21132802 21133106 -261060558 + AluJb SINE Alu 1 304 -8 381 314 70 92 chr1 21133106 21133680 -261059984 - L2 LINE L2 -181 3091 2534 500 266 41 148 chr1 21133972 21134100 -261059564 + L2 LINE L2 2545 2685 -629 687 128 0 147 chr1 21134100 21134256 -261059408 - FLAM_C SINE Alu 0 133 1 1668 174 0 37 chr1 21134262 21134583 -261059081 - AluJo SINE Alu -3 309 1 500 266 41 148 chr1 21134583 21134865 -261058799 + L2 LINE L2 2690 2917 -397 603 241 36 36 chr1 21134887 21135053 -261058611 - L2 LINE L2 -4 3309 3144 1788 144 3 26 chr1 21135053 21135359 -261058305 + AluJo SINE Alu 1 299 -13 249 252 35 133 chr1 21135369 21135512 -261058152 + L2 LINE L2 3184 3312 -1 1683 165 10 16 chr1 21135707 21136016 -261057648 + AluJb SINE Alu 1 307 -5 276 226 0 0 chr1 21136069 21136122 -261057542 + HAL1 LINE L1 1485 1537 -970 233 222 0 0 chr1 21136154 21136199 -261057465 - LTR67 LTR ERVL -31 526 482 282 263 12 0 chr1 21136199 21136279 -261057385 + HAL1 LINE L1 1561 1641 -866 1927 131 0 3 chr1 21136471 21136761 -261056903 - AluSq SINE Alu 0 313 25 823 188 0 0 chr1 21136772 21136910 -261056754 - AluJb SINE Alu -4 308 171 1543 175 17 118 chr1 21137125 21137199 -261056465 + MLT1A1 LTR MaLR 1 81 -284 1940 162 0 0 chr1 21137199 21137502 -261056162 + AluJb SINE Alu 1 303 -9 1543 175 17 118 chr1 21137502 21137833 -261055831 + MLT1A1 LTR MaLR 81 365 0 739 317 54 5 chr1 21137859 21138083 -261055581 - HERV16 LTR ERVL -4761 235 1 787 258 5 125 chr1 21138089 21138105 -261055559 - LTR16A LTR ERVL -6 444 428 1477 224 83 6 chr1 21138105 21138444 -261055220 + MLT1A1 LTR MaLR 1 365 0 787 258 5 125 chr1 21138444 21138649 -261055015 - LTR16A LTR ERVL -22 428 200 1905 142 30 0 chr1 21138649 21138952 -261054712 - AluSx SINE Alu 0 312 1 787 258 5 125 chr1 21138952 21138979 -261054685 - LTR16A LTR ERVL -250 200 171 2161 133 72 20 chr1 21138979 21139325 -261054339 + THE1B LTR MaLR 1 364 0 787 258 5 125 chr1 21139325 21139442 -261054222 - LTR16A LTR ERVL -279 171 121 1992 117 0 3 chr1 21139550 21139863 -261053801 - AluSq SINE Alu 0 314 3 294 313 22 62 chr1 21139868 21140063 -261053601 - L1M4 LINE L1 -874 5272 5093 2007 128 7 0 chr1 21140063 21140361 -261053303 + AluSx SINE Alu 1 300 -12 294 313 22 62 chr1 21140361 21140485 -261053179 - L1M4 LINE L1 -1053 5093 4966 185 334 97 43 chr1 21140637 21140966 -261052698 + L2 LINE L2 1930 2276 -1038 1989 137 3 0 chr1 21141007 21141307 -261052357 - AluSg SINE Alu -9 301 1 2548 136 4 73 chr1 21141312 21141360 -261052304 - L1MC1 LINE L1 -15 6318 6268 1759 123 0 66 chr1 21141360 21141694 -261051970 + AluJo SINE Alu 1 312 0 2548 136 4 73 chr1 21141694 21141900 -261051764 - L1MC1 LINE L1 -65 6268 6049 1994 125 3 3 chr1 21141900 21142197 -261051467 + AluSx SINE Alu 1 297 -15 2548 136 4 73 chr1 21142197 21142332 -261051332 - L1MC1 LINE L1 -284 6049 5968 2008 131 3 6 chr1 21142332 21142645 -261051019 - AluSx SINE Alu 0 312 1 2548 136 4 73 chr1 21142645 21142760 -261050904 - L1MC1 LINE L1 -365 5968 5847 198 219 10 156 chr1 21142858 21142954 -261050710 - MIR SINE MIR -70 192 111 2018 107 0 33 chr1 21143178 21143478 -261050186 + AluSx SINE Alu 12 301 -11 22 35 0 0 chr1 21143883 21143912 -261049752 + AT_rich Low_complexity Low_complexity 1 29 0 303 289 82 0 chr1 21144025 21144122 -261049542 + L2 LINE L2 3205 3309 -4 2328 93 0 0 chr1 21144745 21145055 -261048609 - AluSg SINE Alu 0 310 1 2093 100 0 0 chr1 21145065 21145374 -261048290 - AluSx SINE Alu 0 309 1 1625 270 76 13 chr1 21145374 21145911 -261047753 + L2 LINE L2 1608 2178 -1136 180 0 0 0 chr1 21146500 21146520 -261047144 + (TTC)n Simple_repeat Simple_repeat 1 20 0 2121 120 0 0 chr1 21146522 21146822 -261046842 - AluSq SINE Alu -13 300 1 1951 238 118 25 chr1 21146914 21147553 -261046111 + L2 LINE L2 2318 3010 -303 2006 137 0 3 chr1 21147581 21147880 -261045784 - AluSx SINE Alu -14 298 1 2205 99 3 0 chr1 21148093 21148387 -261045277 + AluSp SINE Alu 2 296 -17 1470 177 4 11 chr1 21149233 21149499 -261044165 + AluJb SINE Alu 22 285 -27 1820 114 0 4 chr1 21149518 21149772 -261043892 - AluSx SINE Alu -59 253 1 227 91 0 23 chr1 21149781 21149825 -261043839 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 828 200 0 13 chr1 21149827 21149982 -261043682 - FAM SINE Alu -27 158 6 1717 167 3 3 chr1 21149993 21150293 -261043371 - AluJo SINE Alu -12 300 1 1927 125 7 0 chr1 21150298 21150585 -261043079 - AluSx SINE Alu -13 299 11 1971 136 0 0 chr1 21150697 21150984 -261042680 + AluJb SINE Alu 9 295 -17 180 0 0 0 chr1 21151061 21151081 -261042583 + (TTTG)n Simple_repeat Simple_repeat 4 23 0 1443 159 12 4 chr1 21151081 21151326 -261042338 - AluJb SINE Alu -65 247 1 1988 120 0 0 chr1 21151657 21151932 -261041732 + AluSx SINE Alu 1 275 -37 186 71 0 0 chr1 21151936 21151964 -261041700 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 681 256 43 39 chr1 21152040 21152274 -261041390 - L2 LINE L2 0 3313 3079 338 91 0 0 chr1 21152291 21152335 -261041329 - LTR33 LTR ERVL 0 521 478 1714 141 3 28 chr1 21152426 21152716 -261040948 + AluJb SINE Alu 1 283 -29 333 62 0 0 chr1 21152716 21152764 -261040900 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2001 117 3 38 chr1 21152764 21153081 -261040583 + AluSx SINE Alu 2 307 -5 484 198 207 0 chr1 21153088 21153209 -261040455 - LTR33 LTR ERVL -50 471 326 1500 140 68 118 chr1 21153214 21153469 -261040195 - MER7A DNA MER2_type -2692 346 115 2270 101 0 0 chr1 21153469 21153776 -261039888 - AluSx SINE Alu -5 307 1 1500 140 68 118 chr1 21153776 21153885 -261039779 - MER7A DNA MER2_type -2923 115 2 1457 174 56 11 chr1 21153906 21154193 -261039471 + AluSg SINE Alu 1 300 -10 235 294 15 15 chr1 21154261 21154329 -261039335 - MIR SINE MIR -124 84 17 1662 225 48 48 chr1 21154329 21154678 -261038986 - MLT1C LTR MaLR 0 467 119 1890 133 10 23 chr1 21154678 21154987 -261038677 - AluJo SINE Alu -7 305 1 1662 225 48 48 chr1 21154987 21155004 -261038660 - MLT1C LTR MaLR -348 119 103 1983 103 3 58 chr1 21155004 21155316 -261038348 - AluSq SINE Alu -18 295 1 1662 225 48 48 chr1 21155316 21155410 -261038254 - MLT1C LTR MaLR -363 104 6 1309 236 69 71 chr1 21155556 21155808 -261037856 + L1ME3A LINE L1 5412 5663 -507 1587 164 7 25 chr1 21155808 21156094 -261037570 + AluJb SINE Alu 1 281 -31 1309 236 69 71 chr1 21156094 21156172 -261037492 + L1ME3A LINE L1 5663 5740 -430 2184 115 0 0 chr1 21156172 21156477 -261037187 + AluSx SINE Alu 1 305 -7 1309 236 69 71 chr1 21156477 21156697 -261036967 + L1ME3A LINE L1 5740 5962 -208 1446 177 60 21 chr1 21156768 21157051 -261036613 + AluJo SINE Alu 3 296 -16 926 190 0 0 chr1 21157185 21157348 -261036316 - FRAM SINE Alu -21 155 1 1203 153 113 18 chr1 21157362 21157637 -261036027 - AluJb SINE Alu -11 301 1 1879 151 6 3 chr1 21157874 21158185 -261035479 - AluJo SINE Alu 0 312 1 1783 160 3 0 chr1 21158606 21158922 -261034742 + AluJb SINE Alu 1 317 0 907 199 0 12 chr1 21158927 21159093 -261034571 + FRAM SINE Alu 3 166 0 573 227 61 0 chr1 21159131 21159263 -261034401 - L1MC4a LINE L1 -1197 6611 6472 427 209 12 0 chr1 21159384 21159470 -261034194 - L2 LINE L2 0 3313 3227 288 237 14 7 chr1 21159516 21159585 -261034079 - MIR SINE MIR -126 82 17 303 285 146 14 chr1 21159688 21159832 -261033832 + MIR SINE MIR 79 241 -21 856 148 34 0 chr1 21159833 21159982 -261033682 - AluJb SINE Alu -22 290 137 2286 79 3 0 chr1 21160105 21160410 -261033254 - AluY SINE Alu -5 306 1 356 314 95 0 chr1 21160429 21160534 -261033130 - L2 LINE L2 -5 3267 3153 825 176 0 0 chr1 21160628 21160770 -261032894 + FLAM_C SINE Alu 1 142 -1 2280 105 0 0 chr1 21160791 21161097 -261032567 + AluSx SINE Alu 1 306 -6 1836 105 4 11 chr1 21161228 21161529 -261032135 + AluSx SINE Alu 19 317 0 192 94 57 75 chr1 21161532 21161585 -261032079 - L2 LINE L2 -4 3309 3258 1756 155 3 13 chr1 21161811 21162114 -261031550 - AluJb SINE Alu -12 300 1 690 199 75 0 chr1 21162216 21162362 -261031302 + MER2 DNA MER2_type 1 157 -188 510 145 0 0 chr1 21162382 21162458 -261031206 - FLAM_A SINE Alu -61 81 6 591 49 37 0 chr1 21162461 21162543 -261031121 + MER2 DNA MER2_type 122 206 -139 258 116 0 0 chr1 21162640 21162683 -261030981 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr1 21163653 21163695 -261029969 + GC_rich Low_complexity Low_complexity 1 42 0 318 339 50 8 chr1 21164251 21164372 -261029292 - MIR SINE MIR -64 144 19 424 235 0 0 chr1 21164476 21164557 -261029107 + L2 LINE L2 3193 3273 -40 559 232 42 0 chr1 21164623 21164765 -261028899 + MIR SINE MIR 71 218 -44 872 123 0 0 chr1 21164924 21165054 -261028610 + FLAM_C SINE Alu 2 131 -2 299 264 130 82 chr1 21165062 21165293 -261028371 + MIR SINE MIR 20 261 -1 32 26 0 0 chr1 21165300 21165339 -261028325 + AT_rich Low_complexity Low_complexity 1 39 0 821 142 0 22 chr1 21165339 21165473 -261028191 - AluJo SINE Alu -176 136 6 1738 161 3 7 chr1 21165486 21165785 -261027879 - AluJb SINE Alu -14 298 1 299 207 241 0 chr1 21166119 21166206 -261027458 - MIR SINE MIR -122 140 33 308 94 0 57 chr1 21166499 21166552 -261027112 - MADE1 DNA Mariner -29 51 2 182 179 0 0 chr1 21166689 21166717 -261026947 + MIR SINE MIR 125 152 -56 1804 169 3 0 chr1 21167034 21167329 -261026335 - AluJb SINE Alu -16 296 1 1882 154 7 0 chr1 21167725 21168031 -261025633 + AluJb SINE Alu 1 308 -4 572 247 124 5 chr1 21168455 21168649 -261025015 + L2 LINE L2 3095 3311 -2 1981 106 3 3 chr1 21169476 21169760 -261023904 + AluSq SINE Alu 1 284 -29 887 116 8 0 chr1 21169639 21169760 -261023904 + AluSp/q SINE Alu 163 305 0 190 0 0 0 chr1 21169760 21169781 -261023883 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 233 299 131 19 chr1 21170169 21170276 -261023388 - L2 LINE L2 -559 2755 2637 431 194 116 33 chr1 21170518 21170651 -261023013 + MIR SINE MIR 107 250 -12 1995 136 3 10 chr1 21170653 21170954 -261022710 + AluSx SINE Alu 1 299 -13 220 308 33 33 chr1 21171140 21171231 -261022433 - L2 LINE L2 -39 3233 3143 293 225 34 79 chr1 21171374 21171463 -261022201 - MIR SINE MIR -3 259 175 2229 178 55 38 chr1 21171676 21172155 -261021509 - L1MB8 LINE L1 0 6178 5686 757 159 32 0 chr1 21172155 21172281 -261021383 - FLAM_A SINE Alu -3 130 1 2229 178 55 38 chr1 21172281 21172385 -261021279 - L1MB8 LINE L1 -492 5686 5585 230 298 129 72 chr1 21172385 21172734 -261020930 - L2 LINE L2 -565 2749 2381 2319 113 0 10 chr1 21172892 21173201 -261020463 + AluSx SINE Alu 1 306 -6 1300 214 153 8 chr1 21174134 21174507 -261019157 + L1ME1 LINE L1 4618 5044 -1102 815 207 96 12 chr1 21175038 21175289 -261018375 + L1ME1 LINE L1 5012 5283 -863 425 252 54 0 chr1 21175312 21175423 -261018241 - FLAM_C SINE Alu -25 118 2 1039 164 53 0 chr1 21175423 21175594 -261018070 - AluJb SINE Alu -1 311 132 22 0 0 0 chr1 21175594 21175616 -261018048 + AT_rich Low_complexity Low_complexity 1 22 0 2326 218 35 21 chr1 21175643 21176221 -261017443 + L1ME1 LINE L1 5358 5943 -223 2269 99 3 0 chr1 21176291 21176585 -261017079 + AluSc SINE Alu 1 295 -14 1117 152 12 0 chr1 21176797 21176968 -261016696 - AluJb SINE Alu 0 312 140 2191 117 6 25 chr1 21177364 21177680 -261015984 - AluSx SINE Alu -2 310 1 958 193 6 0 chr1 21177898 21178064 -261015600 - AluJb SINE Alu -8 304 138 2370 101 3 0 chr1 21178118 21178414 -261015250 + AluSx SINE Alu 1 297 -15 2114 94 22 50 chr1 21178458 21178777 -261014887 - AluY SINE Alu -1 310 1 1902 144 0 0 chr1 21178869 21179139 -261014525 + AluSx SINE Alu 1 270 -42 314 288 82 60 chr1 21179646 21179830 -261013834 + L2 LINE L2 2615 2802 -512 247 286 169 79 chr1 21179921 21180110 -261013554 + L2 LINE L2 3044 3249 -23 535 197 181 48 chr1 21180241 21180429 -261013235 + MIR SINE MIR 2 214 -48 721 132 0 0 chr1 21180500 21180606 -261013058 - AluSg/x SINE Alu -8 304 199 261 198 0 0 chr1 21180774 21180855 -261012809 + (CA)n Simple_repeat Simple_repeat 2 82 0 1223 30 0 0 chr1 21180912 21181045 -261012619 - AluY SINE Alu -178 133 1 507 217 34 91 chr1 21181740 21181915 -261011749 - MIR SINE MIR -26 236 72 995 168 0 58 chr1 21182001 21182192 -261011472 - AluJb SINE Alu -12 300 121 2323 89 10 3 chr1 21182340 21182644 -261011020 - AluSx SINE Alu -6 306 1 208 195 24 0 chr1 21183158 21183199 -261010465 + MIR SINE MIR 20 61 -201 198 103 0 0 chr1 21184335 21184364 -261009300 + (TA)n Simple_repeat Simple_repeat 2 30 0 1695 171 10 55 chr1 21184541 21184712 -261008952 - AluJo SINE Alu -16 296 144 180 0 0 0 chr1 21184712 21184732 -261008932 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1695 171 10 55 chr1 21184732 21184870 -261008794 - AluJo SINE Alu -168 144 1 403 327 154 19 chr1 21184915 21185129 -261008535 - MIR SINE MIR -7 255 13 253 259 83 46 chr1 21187901 21188009 -261005655 + MIR SINE MIR 10 122 -86 2391 83 0 3 chr1 21189349 21189649 -261004015 - AluSc SINE Alu -10 299 1 1478 105 52 0 chr1 21190411 21190621 -261003043 - AluSg/x SINE Alu -4 306 86 2322 104 0 13 chr1 21190700 21191016 -261002648 - AluSx SINE Alu 0 312 1 475 225 169 0 chr1 21191429 21191589 -261002075 + MIR SINE MIR 2 188 -74 180 255 94 66 chr1 21191640 21191746 -261001918 - MIR SINE MIR -69 139 31 286 342 76 16 chr1 21192323 21192535 -261001129 - MIR SINE MIR -2 260 35 391 309 48 8 chr1 21193788 21193914 -260999750 - L2 LINE L2 -15 3257 3127 2253 97 13 3 chr1 21194495 21194803 -260998861 - AluSp SINE Alu -2 311 1 2470 90 0 0 chr1 21194830 21195130 -260998534 + AluSc SINE Alu 1 300 -9 266 313 12 0 chr1 21196631 21196711 -260996953 + MIR SINE MIR 31 111 -97 2130 138 0 0 chr1 21196725 21197022 -260996642 + AluJo SINE Alu 1 297 -15 315 0 0 0 chr1 21197023 21197058 -260996606 + (CA)n Simple_repeat Simple_repeat 1 35 0 424 308 101 6 chr1 21197421 21197580 -260996084 - MIR SINE MIR -87 175 2 2111 153 0 6 chr1 21197928 21198242 -260995422 - AluJb SINE Alu 0 312 1 1634 185 111 13 chr1 21198242 21198630 -260995034 - L1MC4 LINE L1 -879 7163 6734 312 27 0 0 chr1 21198680 21198717 -260994947 + (TG)n Simple_repeat Simple_repeat 1 37 0 310 177 65 0 chr1 21198724 21198786 -260994878 - L1MC4 LINE L1 -1481 6561 6496 943 0 0 0 chr1 21199035 21199139 -260994525 - L1PA3 LINE L1 -1 6154 6051 2291 120 0 0 chr1 21199139 21199440 -260994224 - AluSx SINE Alu -11 301 1 23 33 0 0 chr1 21199522 21199552 -260994112 + AT_rich Low_complexity Low_complexity 1 30 0 255 195 268 0 chr1 21199715 21199797 -260993867 + MIR3 SINE MIR 79 182 -26 250 304 199 12 chr1 21200331 21200502 -260993162 + L2 LINE L2 2602 2804 -510 864 238 22 30 chr1 21200537 21200768 -260992896 + MIR SINE MIR 8 236 -26 1102 252 52 14 chr1 21200793 21201083 -260992581 + L2 LINE L2 2657 2957 -357 2286 117 3 0 chr1 21201090 21201399 -260992265 - AluY SINE Alu -1 310 1 2360 113 0 0 chr1 21201483 21201785 -260991879 - AluSx SINE Alu -7 305 4 211 232 24 136 chr1 21201825 21201882 -260991782 + L2 LINE L2 2989 3027 -245 1821 108 56 70 chr1 21201882 21202073 -260991591 - AluSx SINE Alu 0 309 122 261 0 0 0 chr1 21202073 21202102 -260991562 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1821 108 56 70 chr1 21202102 21202223 -260991441 - AluSx SINE Alu -187 122 1 211 232 24 136 chr1 21202223 21202289 -260991375 + L2 LINE L2 3027 3099 -173 2272 93 10 0 chr1 21203046 21203337 -260990327 + AluSq SINE Alu 1 294 -19 2583 74 7 0 chr1 21203488 21203797 -260989867 + AluSq SINE Alu 1 311 -2 2619 62 0 0 chr1 21203797 21204104 -260989560 + AluY SINE Alu 1 307 -4 1958 151 0 32 chr1 21204450 21204787 -260988877 - AluJo SINE Alu 0 312 1 245 246 197 66 chr1 21205029 21205132 -260988532 + MIR SINE MIR 26 102 -106 2080 142 0 0 chr1 21205132 21205428 -260988236 + AluSx SINE Alu 1 296 -16 245 246 197 66 chr1 21205428 21205446 -260988218 + MIR SINE MIR 102 116 -92 * 471 301 80 5 chr1 21205434 21205647 -260988017 - MIR SINE MIR -1 261 33 257 260 0 14 chr1 21205695 21205768 -260987896 - MIR SINE MIR -14 248 177 1905 108 115 7 chr1 21205888 21206167 -260987497 - AluSg1 SINE Alu 0 309 1 21 36 0 0 chr1 21206172 21206200 -260987464 + AT_rich Low_complexity Low_complexity 1 28 0 2167 127 0 0 chr1 21206205 21206496 -260987168 - AluSx SINE Alu -21 291 1 523 261 25 8 chr1 21206601 21206720 -260986944 + L2 LINE L2 3193 3313 0 321 266 28 0 chr1 21206728 21206827 -260986837 - MIR SINE MIR -65 143 79 615 307 70 19 chr1 21207491 21207706 -260985958 + MIR SINE MIR 9 234 -28 241 204 0 12 chr1 21208154 21208214 -260985450 + MIR SINE MIR 77 135 -73 634 119 0 0 chr1 21208287 21208371 -260985293 - AluJo/FRAM SINE Alu -47 265 182 2296 89 0 17 chr1 21208373 21208708 -260984956 - AluSx SINE Alu 0 312 2 250 279 221 10 chr1 21208713 21208817 -260984847 + MIR SINE MIR 136 261 -1 2072 113 25 0 chr1 21208888 21209206 -260984458 + AluSq SINE Alu 2 326 0 214 298 228 9 chr1 21209206 21209320 -260984344 - L2 LINE L2 -5 3267 3129 28 71 0 0 chr1 21210535 21210591 -260983073 + GC_rich Low_complexity Low_complexity 1 56 0 33 107 0 0 chr1 21210711 21210842 -260982822 + GC_rich Low_complexity Low_complexity 1 131 0 22 80 0 0 chr1 21210964 21211014 -260982650 + GC_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr1 21211226 21211261 -260982403 + GC_rich Low_complexity Low_complexity 1 35 0 200 241 46 11 chr1 21211417 21211504 -260982160 + (TCTCTG)n Simple_repeat Simple_repeat 2 91 0 180 217 313 35 chr1 21212699 21212814 -260980850 - MIR3 SINE MIR -26 182 36 595 249 96 20 chr1 21213454 21213612 -260980052 - MIR SINE MIR -11 251 74 1463 185 70 7 chr1 21213612 21213882 -260979782 + AluJo SINE Alu 25 311 -1 595 249 96 20 chr1 21213882 21213920 -260979744 - MIR SINE MIR -188 74 40 387 105 0 0 chr1 21214278 21214335 -260979329 + (TG)n Simple_repeat Simple_repeat 1 57 0 585 273 56 0 chr1 21215578 21215721 -260977943 + MIR SINE MIR 48 198 -64 300 184 0 126 chr1 21215738 21215775 -260977889 + MER7A DNA MER2_type 31 52 -2986 2325 85 3 0 chr1 21215775 21216085 -260977579 - AluSx SINE Alu 0 311 1 300 184 0 126 chr1 21216085 21216133 -260977531 + MER7A DNA MER2_type 52 104 -242 1583 186 4 0 chr1 21216140 21216388 -260977276 - AluJo SINE Alu -63 249 1 944 28 0 0 chr1 21216397 21216526 -260977138 - AluY SINE Alu 0 304 176 938 169 141 0 chr1 21216529 21216713 -260976951 + MER7A DNA MER2_type 126 335 -1 313 316 95 25 chr1 21217492 21217650 -260976014 - MIR SINE MIR -71 191 23 309 68 0 0 chr1 21218064 21218108 -260975556 + (TCCC)n Simple_repeat Simple_repeat 3 46 0 1300 181 28 87 chr1 21218123 21218327 -260975337 - AluJo SINE Alu -10 302 122 234 0 0 0 chr1 21218327 21218353 -260975311 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1300 181 28 87 chr1 21218353 21218469 -260975195 - AluJo SINE Alu -190 122 1 2326 100 0 0 chr1 21219132 21219421 -260974243 + AluSx SINE Alu 1 289 -23 2587 47 3 0 chr1 21219432 21219733 -260973931 + AluY SINE Alu 1 302 -9 197 281 31 47 chr1 21219972 21220036 -260973628 - MER5A DNA MER1_type -110 79 17 * 198 271 21 0 chr1 21219990 21220038 -260973626 + MER5A DNA MER1_type 141 189 0 1945 135 30 7 chr1 21220554 21220851 -260972813 + AluJb SINE Alu 1 304 -8 398 211 122 48 chr1 21221023 21221170 -260972494 - MIR SINE MIR -42 220 63 * 569 273 86 43 chr1 21221164 21221398 -260972266 - MIR SINE MIR 0 262 4 443 338 76 69 chr1 21222095 21222624 -260971040 + L2 LINE L2 2719 3252 -20 191 167 24 0 chr1 21222624 21222666 -260970998 + GA-rich Low_complexity Low_complexity 4 46 0 327 291 10 92 chr1 21222685 21222891 -260970773 - L2 LINE L2 -162 3110 2922 216 97 0 0 chr1 21223452 21223483 -260970181 + (CCCCCA)n Simple_repeat Simple_repeat 4 34 0 384 293 100 0 chr1 21225336 21225486 -260968178 - MIR SINE MIR -70 192 28 209 356 58 0 chr1 21225509 21225613 -260968051 - MIR SINE MIR -69 193 84 1755 139 87 7 chr1 21225729 21226017 -260967647 + AluJb SINE Alu 1 311 -1 279 250 47 0 chr1 21226017 21226081 -260967583 + polypurine Low_complexity Low_complexity 2 68 0 2398 75 0 0 chr1 21226508 21226815 -260966849 - AluSc SINE Alu -2 307 1 740 296 18 22 chr1 21226958 21227181 -260966483 + MIR SINE MIR 41 262 0 395 152 202 30 chr1 21227243 21227342 -260966322 - L2 LINE L2 0 3313 3198 2292 60 0 3 chr1 21227606 21227924 -260965740 - AluY SINE Alu 0 317 1 1730 167 7 10 chr1 21228017 21228317 -260965347 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 21228378 21228401 -260965263 + AT_rich Low_complexity Low_complexity 1 23 0 800 179 51 66 chr1 21228474 21228670 -260964994 - AluJo SINE Alu -5 307 115 264 244 47 23 chr1 21228817 21228903 -260964761 - MIR SINE MIR -147 115 28 2247 106 3 0 chr1 21229036 21229347 -260964317 - AluSq SINE Alu -1 312 1 423 306 33 30 chr1 21229390 21229567 -260964097 - MIR SINE MIR -69 139 16 358 244 22 67 chr1 21229787 21229922 -260963742 + MIR3 SINE MIR 34 162 -46 404 254 17 102 chr1 21230053 21230108 -260963556 + L2 LINE L2 3098 3156 -157 2353 77 6 6 chr1 21230108 21230419 -260963245 - AluSx SINE Alu -1 311 1 404 254 17 102 chr1 21230419 21230599 -260963065 + L2 LINE L2 3156 3313 0 308 227 2 29 chr1 21230901 21230977 -260962687 - MIR SINE MIR -63 145 79 28 0 0 0 chr1 21231366 21231394 -260962270 + GC_rich Low_complexity Low_complexity 1 28 0 21 95 0 0 chr1 21232214 21232277 -260961387 + GC_rich Low_complexity Low_complexity 1 63 0 1021 297 205 27 chr1 21233017 21233827 -260959837 + L2 LINE L2 2251 3235 -78 1752 111 0 0 chr1 21233830 21234074 -260959590 - AluSg/x SINE Alu 0 310 67 516 147 0 73 chr1 21234666 21234775 -260958889 - FRAM SINE Alu -1 175 75 525 174 87 0 chr1 21234801 21234893 -260958771 - FRAM SINE Alu -57 119 20 606 181 164 0 chr1 21235024 21235140 -260958524 - FLAM_A SINE Alu -7 135 1 975 255 79 34 chr1 21235143 21235523 -260958141 + MER113 DNA MER1_type? 82 478 -43 588 250 122 0 chr1 21235745 21235909 -260957755 - MIR SINE MIR -8 254 71 480 280 152 5 chr1 21235976 21236187 -260957477 + L2 LINE L2 1994 2235 -1079 1309 80 0 0 chr1 21236199 21236362 -260957302 - AluSx SINE Alu -149 163 1 1031 320 59 29 chr1 21236477 21236881 -260956783 + L2 LINE L2 2806 3229 -84 2003 142 7 3 chr1 21236881 21237190 -260956474 - AluSx SINE Alu -2 310 1 1031 320 59 29 chr1 21237190 21237275 -260956389 + L2 LINE L2 3229 3310 -3 330 308 77 8 chr1 21237395 21237525 -260956139 - L2 LINE L2 0 3272 3134 246 369 0 13 chr1 21238607 21238776 -260954888 + CT-rich Low_complexity Low_complexity 1 166 0 501 321 160 9 chr1 21238956 21239181 -260954483 + MIR SINE MIR 3 257 -5 1193 161 5 19 chr1 21239182 21239387 -260954277 + AluJo SINE Alu 9 210 -102 1023 239 40 0 chr1 21239575 21239822 -260953842 - MIR SINE MIR 0 262 6 2073 80 40 0 chr1 21239853 21240151 -260953513 + AluSp SINE Alu 1 309 0 2107 142 0 3 chr1 21240285 21240594 -260953070 - AluJb SINE Alu -4 308 1 504 256 77 53 chr1 21240672 21240826 -260952838 - L1ME4a LINE L1 -188 5933 5769 2175 128 3 0 chr1 21240826 21241132 -260952532 - AluSx SINE Alu -5 307 1 504 256 77 53 chr1 21241132 21241223 -260952441 - L1ME4a LINE L1 -352 5769 5682 562 282 144 6 chr1 21241595 21241776 -260951888 + MIR SINE MIR 56 261 -1 208 196 4 122 chr1 21241794 21241889 -260951775 + MIR SINE MIR 47 135 -73 485 308 154 18 chr1 21242584 21242811 -260950853 - MIR SINE MIR -4 258 1 216 0 0 0 chr1 21243645 21243669 -260949995 + (TG)n Simple_repeat Simple_repeat 1 24 0 2112 106 0 3 chr1 21244182 21244466 -260949198 - AluSx SINE Alu -29 283 1 324 390 0 0 chr1 21244766 21244943 -260948721 + (CTAGGG)n Simple_repeat Simple_repeat 1 177 0 436 240 182 19 chr1 21246190 21246344 -260947320 + MER5A DNA MER1_type 4 182 -7 514 343 50 6 chr1 21246443 21246624 -260947040 + MIR SINE MIR 30 218 -44 354 320 40 0 chr1 21247464 21247589 -260946075 + MIR3 SINE MIR 30 159 -49 2121 116 7 3 chr1 21247647 21247948 -260945716 + AluSx SINE Alu 1 302 -10 1572 114 87 24 chr1 21247948 21248200 -260945464 - AluJo SINE Alu -30 282 13 187 296 0 0 chr1 21248318 21248362 -260945302 + MIR SINE MIR 104 147 -61 745 306 53 33 chr1 21248435 21248680 -260944984 + MIR SINE MIR 13 262 0 308 256 124 16 chr1 21248801 21248922 -260944742 - MER91C DNA MER1_type -6 134 1 2133 96 33 3 chr1 21250185 21250487 -260943177 - AluSx SINE Alu 0 312 2 225 0 0 0 chr1 21250490 21250515 -260943149 + (T)n Simple_repeat Simple_repeat 1 25 0 1602 167 25 0 chr1 21250577 21250852 -260942812 - AluJo SINE Alu -30 282 1 417 259 0 61 chr1 21250882 21251013 -260942651 + MIR SINE MIR 63 185 -77 1067 273 99 5 chr1 21251051 21251465 -260942199 + MLT1J LTR MaLR 5 457 -54 2033 143 0 3 chr1 21251469 21251776 -260941888 + AluJb SINE Alu 1 306 -6 189 206 0 0 chr1 21251954 21251988 -260941676 + L2 LINE L2 3261 3294 -19 512 200 0 75 chr1 21252045 21252133 -260941531 - MIR SINE MIR -132 130 52 2289 78 0 44 chr1 21252133 21252453 -260941211 - AluY SINE Alu -5 306 1 512 200 0 75 chr1 21252453 21252484 -260941180 - MIR SINE MIR -210 52 20 298 310 83 30 chr1 21252483 21252647 -260941017 - MIR3 SINE MIR -11 197 22 * 336 293 66 48 chr1 21253121 21253288 -260940376 + MIR3 SINE MIR 2 171 -37 2175 125 0 3 chr1 21253366 21253679 -260939985 - AluSx SINE Alu 0 312 1 731 194 0 15 chr1 21253679 21253813 -260939851 - AluJo/FLAM SINE Alu -180 132 1 241 281 125 10 chr1 21253849 21253945 -260939719 + MIR SINE MIR 150 256 -6 382 179 0 0 chr1 21254002 21254069 -260939595 - MLT1J LTR MaLR -198 313 247 207 331 105 41 chr1 21254559 21254731 -260938933 + L2 LINE L2 3040 3222 -50 390 246 127 14 chr1 21254886 21255028 -260938636 + MIR SINE MIR 89 246 -16 240 284 239 0 chr1 21255078 21255212 -260938452 + MIR SINE MIR 43 208 -54 694 146 7 49 chr1 21255932 21256076 -260937588 - MIR SINE MIR -119 143 6 754 188 6 29 chr1 21256292 21256462 -260937202 + LTR28 LTR ERV1 1 166 -854 * 1573 199 9 18 chr1 21256460 21257071 -260936593 + LTR28 LTR ERV1 300 1015 -5 238 202 53 85 chr1 21257195 21257289 -260936375 + MIR SINE MIR 117 207 -55 2384 86 0 0 chr1 21257291 21257594 -260936070 - AluY SINE Alu -8 303 1 2197 123 45 31 chr1 21258173 21258532 -260935132 + THE1B LTR MaLR 1 364 0 374 232 126 0 chr1 21258758 21258853 -260934811 + MIR SINE MIR 47 153 -109 2079 95 0 56 chr1 21258874 21259203 -260934461 + AluSq SINE Alu 1 312 0 2015 138 26 3 chr1 21259316 21259621 -260934043 + AluJb SINE Alu 1 312 0 2112 124 16 0 chr1 21259627 21259934 -260933730 + AluSx SINE Alu 1 312 0 303 252 95 54 chr1 21260025 21260172 -260933492 - MER5A DNA MER1_type -8 177 18 1825 173 0 0 chr1 21260433 21260728 -260932936 - AluJb SINE Alu -17 295 1 312 89 10 0 chr1 21310844 21310899 -260882765 - Alu SINE Alu -258 42 1 452 273 91 32 chr1 21310999 21311153 -260882511 + MIR3 SINE MIR 35 197 -11 669 110 0 0 chr1 21311640 21311740 -260881924 + (TTTC)n Simple_repeat Simple_repeat 3 102 0 2084 115 7 3 chr1 21311742 21312030 -260881634 - AluSg1 SINE Alu -20 289 1 259 320 131 48 chr1 21312230 21312436 -260881228 - MIR SINE MIR -21 241 19 2073 152 0 9 chr1 21312602 21312917 -260880747 + AluSx SINE Alu 1 312 0 753 93 0 0 chr1 21312978 21313085 -260880579 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2263 125 27 29 chr1 21313190 21313566 -260880098 + THE1C LTR MaLR 1 375 0 1942 157 0 27 chr1 21313631 21313931 -260879733 + AluJb SINE Alu 1 292 -20 2279 105 0 0 chr1 21313939 21314233 -260879431 + AluY SINE Alu 1 294 -17 520 316 87 0 chr1 21315481 21315699 -260877965 - MIR SINE MIR -5 257 21 2033 78 0 0 chr1 21315911 21316181 -260877483 - MER41A LTR ERV1 -1 553 284 419 130 0 39 chr1 21316185 21316262 -260877402 + Alu SINE Alu 238 311 -1 4743 75 30 3 chr1 21316263 21316929 -260876735 - HUERS-P1 LTR ERV1 -3068 3195 2512 233 272 244 64 chr1 21317030 21317259 -260876405 + L2 LINE L2 2850 3036 -277 1926 122 73 7 chr1 21317259 21317545 -260876119 + AluSg SINE Alu 2 306 -4 233 272 244 64 chr1 21317545 21317708 -260875956 + L2 LINE L2 3036 3313 0 228 222 56 0 chr1 21318154 21318208 -260875456 - MIR SINE MIR -50 212 156 278 297 135 20 chr1 21318369 21318517 -260875147 + MIR SINE MIR 19 183 -79 334 305 8 31 chr1 21318521 21318649 -260875015 - L2 LINE L2 -4 3309 3185 2434 79 0 3 chr1 21318651 21318956 -260874708 + AluSx SINE Alu 7 310 -2 23 0 0 0 chr1 21319566 21319589 -260874075 + GC_rich Low_complexity Low_complexity 1 23 0 220 147 0 29 chr1 21319640 21319708 -260873956 + (CGGGG)n Simple_repeat Simple_repeat 2 67 0 5255 83 21 3 chr1 21320060 21321128 -260872536 - L1PA10 LINE L1 -187 5981 4894 2139 132 0 10 chr1 21321130 21321434 -260872230 - AluJb SINE Alu -11 301 1 364 247 29 65 chr1 21321594 21321764 -260871900 - L1ME4a LINE L1 -1 6120 5957 1869 145 0 24 chr1 21321774 21322085 -260871579 - AluSx SINE Alu 0 304 1 1717 75 0 0 chr1 21322100 21322312 -260871352 - AluY SINE Alu 0 311 100 973 183 61 19 chr1 21322551 21322766 -260870898 - MIR SINE MIR -21 241 20 570 284 147 0 chr1 21322981 21323206 -260870458 - MIR SINE MIR -3 259 2 589 228 44 13 chr1 21323265 21323423 -260870241 - MIR SINE MIR -12 250 88 1347 271 17 3 chr1 21323428 21323790 -260869874 + LTR16A LTR ERVL 22 388 -62 2265 117 7 3 chr1 21323852 21324160 -260869504 - AluSx SINE Alu -3 309 1 299 254 73 85 chr1 21324492 21324669 -260868995 + L1ME4a LINE L1 5947 6121 0 557 205 71 0 chr1 21324711 21324838 -260868826 - MER63 DNA MER1_type -273 789 28 2283 94 13 13 chr1 21324897 21325195 -260868469 + AluSq SINE Alu 1 298 -15 254 122 0 0 chr1 21325195 21325244 -260868420 + L1MB4 LINE L1 6132 6180 0 2279 123 0 0 chr1 21325276 21325578 -260868086 + AluSx SINE Alu 1 302 -10 304 302 39 73 chr1 21325582 21325761 -260867903 - L1MC4 LINE L1 -44 7998 7826 266 189 4 0 chr1 21325794 21325848 -260867816 - L1ME2 LINE L1 0 6162 6107 656 191 254 10 chr1 21325848 21326057 -260867607 + L2 LINE L2 1817 2076 -1238 * 2393 283 135 15 chr1 21326055 21326202 -260867462 - L2 LINE L2 -1959 1355 1227 1443 201 28 18 chr1 21326202 21326485 -260867179 + AluJo SINE Alu 1 286 -26 2393 283 135 15 chr1 21326485 21327008 -260866656 - L2 LINE L2 -2087 1227 768 1924 145 3 30 chr1 21327008 21327311 -260866353 + AluSx SINE Alu 3 297 -15 2393 283 135 15 chr1 21327311 21327742 -260865922 - L2 LINE L2 -2546 768 121 354 306 69 14 chr1 21328012 21328156 -260865508 - MIR SINE MIR -12 250 99 369 215 0 74 chr1 21328261 21328382 -260865282 + MLT1K LTR MaLR 470 581 -7 2433 107 0 0 chr1 21328969 21329277 -260864387 - AluSg SINE Alu -2 308 1 834 155 16 0 chr1 21329277 21329406 -260864258 - AluJo/FLAM SINE Alu -171 131 1 795 64 0 0 chr1 21329564 21329673 -260863991 - L1PA14 LINE L1 -336 5825 5717 541 219 180 22 chr1 21329717 21329900 -260863764 - L2 LINE L2 -504 2810 2599 198 97 32 0 chr1 21329906 21329937 -260863727 - L2 LINE L2 -18 3295 3264 356 291 8 45 chr1 21329949 21330083 -260863581 + MER5A DNA MER1_type 60 188 -1 684 236 79 2 chr1 21330162 21330348 -260863316 - MIR SINE MIR -45 217 23 2231 126 0 0 chr1 21330899 21331200 -260862464 - AluSx SINE Alu -11 301 1 795 213 121 36 chr1 21331329 21331634 -260862030 - MER113 DNA MER1_type? -3 518 188 789 160 94 90 chr1 21331634 21331878 -260861786 - L1MD3 LINE L1 -22 7973 7729 1993 147 3 7 chr1 21331879 21332179 -260861485 - AluJb SINE Alu -13 299 1 248 351 106 10 chr1 21332203 21332411 -260861253 - L2 LINE L2 -454 2860 2633 2176 96 50 0 chr1 21332516 21332798 -260860866 + AluSc SINE Alu 1 296 -13 378 275 78 82 chr1 21332865 21332992 -260860672 - L1ME3A LINE L1 -1 6161 6036 1668 185 10 24 chr1 21332992 21333289 -260860375 + AluJo SINE Alu 7 299 -13 378 275 78 82 chr1 21333289 21333407 -260860257 - L1ME3A LINE L1 -126 6036 5919 201 319 102 69 chr1 21333520 21333684 -260859980 - MIR SINE MIR -20 242 68 2167 131 0 22 chr1 21333684 21333998 -260859666 - AluSx SINE Alu -5 307 1 201 319 102 69 chr1 21333998 21334049 -260859615 - MIR SINE MIR -194 68 20 331 229 48 185 chr1 21334125 21334417 -260859247 + MIR SINE MIR 9 260 -2 253 252 24 24 chr1 21334875 21334998 -260858666 - LTR67 LTR ERVL 0 557 435 1578 103 0 0 chr1 21335136 21335350 -260858314 + Charlie3 DNA MER1_type 50 263 -2447 255 236 0 0 chr1 21335398 21335453 -260858211 + L2 LINE L2 3218 3272 0 2331 108 0 6 chr1 21335482 21335796 -260857868 - AluSx SINE Alu 0 312 1 660 306 102 0 chr1 21336327 21336562 -260857102 + MIR SINE MIR 4 262 0 399 267 168 12 chr1 21336713 21336874 -260856790 - MIR SINE MIR -46 216 31 308 245 102 0 chr1 21337181 21337279 -260856385 - MIR SINE MIR -119 143 36 2252 127 0 13 chr1 21337753 21338069 -260855595 - AluSx SINE Alu 0 312 1 692 261 66 46 chr1 21338245 21338472 -260855192 + MIR SINE MIR 18 248 -14 494 69 46 35 chr1 21341139 21341226 -260852438 - Alu SINE Alu -2 309 222 626 121 0 10 chr1 21342317 21342416 -260851248 + MER4A LTR ERV1 1 98 -566 1597 120 17 80 chr1 21342416 21342773 -260850891 + MER4A LTR ERV1 261 653 -11 1115 308 70 34 chr1 21342842 21343400 -260850264 + MLT1K LTR MaLR 11 588 0 1791 124 94 8 chr1 21343700 21343967 -260849697 - AluSx SINE Alu -22 290 1 376 236 0 45 chr1 21344295 21344405 -260849259 + MIR SINE MIR 39 143 -119 1875 144 4 0 chr1 21344406 21344684 -260848980 + AluJb SINE Alu 1 279 -33 200 86 29 0 chr1 21344687 21344722 -260848942 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr1 21345657 21345679 -260847985 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 300 239 54 22 chr1 21345886 21345978 -260847686 + MIR SINE MIR 49 143 -65 2175 118 0 13 chr1 21346091 21346397 -260847267 - AluSq SINE Alu -11 302 1 523 286 66 59 chr1 21346437 21346571 -260847093 - L1ME4a LINE L1 -15 6106 5974 2399 102 0 3 chr1 21346571 21346884 -260846780 - AluSq SINE Alu -1 312 1 523 286 66 59 chr1 21346884 21347189 -260846475 - L1ME4a LINE L1 -147 5974 5664 564 224 77 13 chr1 21348218 21348374 -260845290 - MER103 DNA DNA 0 166 1 2030 157 3 0 chr1 21348943 21349242 -260844422 - AluSx SINE Alu -12 300 1 277 225 18 107 chr1 21349391 21349479 -260844185 + L1MC/D LINE L1 5727 5794 -2014 683 194 23 8 chr1 21349479 21349608 -260844056 + L1PA8A LINE L1 6001 6131 0 277 225 18 107 chr1 21349608 21349688 -260843976 + L1MC/D LINE L1 5794 5880 -1928 664 203 0 0 chr1 21349790 21349908 -260843756 - FRAM SINE Alu -11 165 48 22 25 0 25 chr1 21350055 21350074 -260843590 + AT_rich Low_complexity Low_complexity 1 19 -20 2275 107 0 3 chr1 21350074 21350374 -260843290 - AluSq SINE Alu -13 300 2 22 25 0 25 chr1 21350374 21350394 -260843270 + AT_rich Low_complexity Low_complexity 19 39 0 946 125 0 22 chr1 21350397 21350533 -260843131 - FLAM_C SINE Alu 0 133 1 2317 114 3 0 chr1 21350854 21351162 -260842502 - AluSq SINE Alu -4 309 1 561 208 0 0 chr1 21351170 21351271 -260842393 - FLAM_C SINE Alu -11 132 32 6610 242 41 38 chr1 21351272 21351974 -260841690 - L1M4 LINE L1 -3399 3245 2547 180 77 0 0 chr1 21351984 21352010 -260841654 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1632 203 0 3 chr1 21352010 21352295 -260841369 - AluSq SINE Alu -26 287 2 6610 242 41 38 chr1 21352295 21352369 -260841295 - L1M4 LINE L1 -4097 2547 2475 2318 88 7 13 chr1 21352369 21352674 -260840990 - AluSq SINE Alu -10 303 1 6610 242 41 38 chr1 21352674 21353156 -260840508 - L1M4 LINE L1 -4169 2475 1996 2304 120 3 0 chr1 21353156 21353464 -260840200 - AluSp SINE Alu -4 309 1 2324 116 3 0 chr1 21353466 21353777 -260839887 - AluSx SINE Alu 0 312 1 6610 242 41 38 chr1 21353777 21354461 -260839203 - L1M4 LINE L1 -4648 1996 1316 1505 216 0 10 chr1 21354461 21354767 -260838897 - AluY SINE Alu -8 303 1 6610 242 41 38 chr1 21354767 21356038 -260837626 - L1M4 LINE L1 -5328 1316 14 1509 203 14 3 chr1 21356059 21356350 -260837314 - L2 LINE L2 -629 2685 2392 2935 178 42 51 chr1 21356350 21356551 -260837113 + L1MC/D LINE L1 4946 5147 -1186 2296 109 3 3 chr1 21356551 21356863 -260836801 + AluSx SINE Alu 1 312 0 2935 178 42 51 chr1 21356863 21357038 -260836626 + L1MC/D LINE L1 5147 5322 -1011 2216 104 0 7 chr1 21357038 21357351 -260836313 + AluSx SINE Alu 1 311 0 2935 178 42 51 chr1 21357351 21357750 -260835914 + L1MC/D LINE L1 5322 5727 -606 478 318 58 12 chr1 21358487 21358660 -260835004 + MIR SINE MIR 25 205 -57 1140 274 31 0 chr1 21358660 21358952 -260834712 + AluSq SINE Alu 3 303 0 519 341 46 40 chr1 21359083 21359385 -260834279 - L1MC/D LINE L1 -2238 5570 5267 285 259 28 0 chr1 21359397 21359505 -260834159 - Charlie5 DNA MER1_type -31 2581 2471 867 306 13 10 chr1 21359505 21359806 -260833858 + AluSx SINE Alu 1 302 0 22 0 0 0 chr1 21359818 21359840 -260833824 + AT_rich Low_complexity Low_complexity 1 22 0 1216 241 19 29 chr1 21360403 21360714 -260832950 + AluSg SINE Alu 3 310 0 696 145 0 0 chr1 21360728 21360845 -260832819 + (GAAAA)n Simple_repeat Simple_repeat 4 120 0 240 324 28 0 chr1 21361299 21361370 -260832294 - MIR SINE MIR -33 229 157 530 213 107 0 chr1 21361570 21361692 -260831972 + L2 LINE L2 3179 3313 0 182 306 14 56 chr1 21361776 21361848 -260831816 + MIR SINE MIR 32 100 -108 440 231 65 0 chr1 21361910 21362018 -260831646 + MIR SINE MIR 27 141 -121 325 323 150 35 chr1 21362610 21362836 -260830828 - MIR SINE MIR -3 259 8 1658 157 27 4 chr1 21363476 21363737 -260829927 - AluJo SINE Alu -36 276 10 858 160 0 0 chr1 21363887 21364018 -260829646 + FLAM_C SINE Alu 1 131 -2 2240 102 0 3 chr1 21364262 21364556 -260829108 + AluSx SINE Alu 1 293 -19 195 167 0 0 chr1 21364736 21364766 -260828898 - MIR SINE MIR -17 245 216 * 336 230 27 0 chr1 21364740 21364814 -260828850 - L2 LINE L2 -27 3245 3170 199 234 16 47 chr1 21364834 21364898 -260828766 - MER5B DNA MER1_type -14 164 103 848 246 91 0 chr1 21365078 21365298 -260828366 + MIR SINE MIR 1 240 -22 185 239 204 0 chr1 21365361 21365449 -260828215 - L2 LINE L2 -221 3051 2946 216 253 0 0 chr1 21365620 21365695 -260827969 + (TG)n Simple_repeat Simple_repeat 1 75 0 695 260 91 0 chr1 21366013 21366221 -260827443 + MIR SINE MIR 3 229 -33 259 362 71 0 chr1 21366296 21366423 -260827241 - L2 LINE L2 -21 3251 3116 356 259 92 38 chr1 21366547 21366678 -260826986 - MIR SINE MIR -78 184 47 2127 115 0 7 chr1 21367230 21367525 -260826139 + AluSx SINE Alu 1 293 -19 195 167 0 0 chr1 21367705 21367735 -260825929 - MIR SINE MIR -17 245 216 * 336 230 27 0 chr1 21367709 21367783 -260825881 - L2 LINE L2 -27 3245 3170 199 234 16 47 chr1 21367803 21367867 -260825797 - MER5B DNA MER1_type -14 164 103 848 246 91 0 chr1 21368047 21368267 -260825397 + MIR SINE MIR 1 240 -22 185 239 204 0 chr1 21368330 21368418 -260825246 - L2 LINE L2 -221 3051 2946 216 253 0 0 chr1 21368589 21368664 -260825000 + (TG)n Simple_repeat Simple_repeat 1 75 0 695 260 91 0 chr1 21368980 21369188 -260824476 + MIR SINE MIR 3 229 -33 259 362 71 0 chr1 21369263 21369390 -260824274 - L2 LINE L2 -21 3251 3116 530 219 24 14 chr1 21369507 21369678 -260823986 - MIR SINE MIR -71 191 15 234 315 34 0 chr1 21370325 21370414 -260823250 + MLT1H1 LTR MaLR 457 548 -7 * 1762 129 0 0 chr1 21370412 21370668 -260822996 - THE1B LTR MaLR -108 256 1 813 213 195 46 chr1 21371016 21371344 -260822320 + MLT1C LTR MaLR 8 384 -83 341 277 85 0 chr1 21372528 21372658 -260821006 + MLT1J LTR MaLR 12 152 -359 500 190 50 0 chr1 21372700 21372800 -260820864 + MLT1C LTR MaLR 401 505 0 302 203 16 0 chr1 21372824 21372888 -260820776 + MLT1J LTR MaLR 410 474 -37 858 202 45 17 chr1 21372984 21373162 -260820502 + MLT1J LTR MaLR 3 185 -326 589 204 132 0 chr1 21373249 21373401 -260820263 + MLT1J LTR MaLR 333 504 -7 345 299 201 33 chr1 21374422 21374696 -260818968 + MLT1H LTR MaLR 20 339 -210 263 178 0 0 chr1 21374770 21374815 -260818849 + MLT1H LTR MaLR 501 545 -4 205 365 56 0 chr1 21374822 21374929 -260818735 + L2 LINE L2 3117 3229 -43 478 259 16 65 chr1 21375365 21375550 -260818114 + MIR SINE MIR 36 211 -51 2430 90 6 6 chr1 21375973 21376284 -260817380 - AluSq SINE Alu -1 312 2 226 344 145 33 chr1 21376366 21376607 -260817057 + L2 LINE L2 2985 3252 -20 387 324 78 6 chr1 21376869 21377048 -260816616 + MIR SINE MIR 20 211 -51 2164 88 0 0 chr1 21377052 21377326 -260816338 + AluSc SINE Alu 36 309 0 569 295 58 5 chr1 21377373 21377563 -260816101 + MIR SINE MIR 15 214 -48 412 289 35 0 chr1 21378629 21378743 -260814921 - MIR SINE MIR -70 192 75 * 512 295 202 14 chr1 21378739 21379201 -260814463 + L2 LINE L2 2702 3244 -28 582 244 0 0 chr1 21379236 21379408 -260814256 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 486 262 0 0 chr1 21379446 21379595 -260814069 + (TGGA)n Simple_repeat Simple_repeat 3 151 0 285 184 0 0 chr1 21379628 21379677 -260813987 + MIR SINE MIR 98 146 -62 2607 66 0 0 chr1 21380890 21381193 -260812471 + AluY SINE Alu 1 303 -8 251 268 82 41 chr1 21382381 21382478 -260811186 + MIR SINE MIR 143 243 -19 309 186 35 70 chr1 21382511 21382597 -260811067 + MIR SINE MIR 107 189 -73 2162 128 3 0 chr1 21382790 21383071 -260810593 + AluSx SINE Alu 1 285 -27 294 29 0 0 chr1 21383071 21383106 -260810558 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2162 128 3 0 chr1 21383106 21383129 -260810535 + AluSx SINE Alu 285 306 -6 1076 264 63 63 chr1 21383460 21383608 -260810056 + MLT1I LTR MaLR 1 148 -261 2022 164 0 0 chr1 21383608 21383913 -260809751 - AluJb SINE Alu -5 307 3 1076 264 63 63 chr1 21383913 21384162 -260809502 + MLT1I LTR MaLR 147 398 -11 448 275 96 11 chr1 21384177 21384355 -260809309 + MIR SINE MIR 70 262 0 181 276 129 103 chr1 21384601 21384717 -260808947 + MIR SINE MIR 25 143 -65 262 304 27 27 chr1 21385001 21385149 -260808515 + L2 LINE L2 2962 3109 -163 370 226 233 44 chr1 21385169 21385328 -260808336 + MER5A DNA MER1_type 1 189 0 1819 148 3 31 chr1 21385563 21385853 -260807811 + AluJb SINE Alu 1 282 -30 2503 71 0 0 chr1 21386014 21386309 -260807355 + AluY SINE Alu 1 295 -16 259 303 275 0 chr1 21387005 21387147 -260806517 + MIR SINE MIR 68 248 -14 2519 78 0 25 chr1 21387187 21387507 -260806157 - AluSq SINE Alu -1 312 1 534 268 93 21 chr1 21387544 21387738 -260805926 - MIR SINE MIR -11 251 44 385 304 42 65 chr1 21387827 21387995 -260805669 - MIR3 SINE MIR -7 201 38 850 259 15 10 chr1 21388188 21388389 -260805275 - MIR SINE MIR 0 262 61 535 360 30 5 chr1 21389057 21389257 -260804407 - MIR SINE MIR -11 251 47 421 253 25 86 chr1 21389319 21389367 -260804297 - MIR3 SINE MIR -15 193 144 2009 114 40 4 chr1 21389367 21389661 -260804003 - AluSx SINE Alu 0 305 2 421 253 25 86 chr1 21389661 21389773 -260803891 - MIR3 SINE MIR -64 144 42 2038 135 7 14 chr1 21390212 21390509 -260803155 + AluJb SINE Alu 1 295 -17 777 279 83 53 chr1 21390519 21390919 -260802745 + L1ME4a LINE L1 5444 5856 -265 720 184 0 15 chr1 21390965 21391101 -260802563 + FLAM_A SINE Alu 8 141 -1 1343 83 0 39 chr1 21391275 21391456 -260802208 + AluSq SINE Alu 20 193 -120 1698 169 219 0 chr1 21391472 21391832 -260801832 - MLT1D LTR MaLR -55 450 12 194 252 269 0 chr1 21391950 21392069 -260801595 + L2 LINE L2 3162 3312 -1 207 277 0 46 chr1 21392250 21392315 -260801349 + MER5A DNA MER1_type 21 82 -107 2417 92 0 22 chr1 21393060 21393377 -260800287 + AluSx SINE Alu 1 310 -2 1055 296 154 11 chr1 21393380 21394166 -260799498 + L2 LINE L2 2420 3305 -8 909 120 0 8 chr1 21394412 21394537 -260799127 - FLAM_A SINE Alu -8 134 11 244 235 0 0 chr1 21394566 21394617 -260799047 + L2 LINE L2 3006 3056 -257 1013 185 12 18 chr1 21394664 21394915 -260798749 - AluJb SINE Alu -9 303 1 236 269 119 62 chr1 21394922 21395082 -260798582 + L2 LINE L2 3132 3300 -13 445 323 90 27 chr1 21395242 21395465 -260798199 - MIR SINE MIR -14 248 12 424 264 110 52 chr1 21395870 21396025 -260797639 - MER5A DNA MER1_type 0 189 26 472 307 23 17 chr1 21396219 21396395 -260797269 - MIR SINE MIR -76 186 10 240 292 47 64 chr1 21396841 21397012 -260796652 - MER20B DNA MER1_type -615 168 1 563 312 13 39 chr1 21397197 21397316 -260796348 + MIR SINE MIR 38 150 -112 2207 113 3 10 chr1 21397316 21397625 -260796039 - AluSx SINE Alu -5 307 1 563 312 13 39 chr1 21397625 21397736 -260795928 + MIR SINE MIR 150 262 0 701 267 75 33 chr1 21398461 21398701 -260794963 + MIR SINE MIR 11 260 -2 212 286 14 29 chr1 21398705 21398775 -260794889 + L2 LINE L2 3203 3271 -1 2233 62 79 17 chr1 21398825 21399116 -260794548 + AluSp SINE Alu 1 309 -4 212 290 60 30 chr1 21399432 21399532 -260794132 + MIR SINE MIR 64 166 -96 784 196 48 48 chr1 21399667 21399856 -260793808 + MER20 DNA MER1_type 24 212 -7 281 324 57 0 chr1 21400420 21400525 -260793139 - L2 LINE L2 -5 3308 3198 388 266 62 16 chr1 21400654 21400782 -260792882 - MIR3 SINE MIR -39 169 36 528 264 31 12 chr1 21400820 21400983 -260792681 - MIR SINE MIR -9 253 88 323 239 76 0 chr1 21401077 21401169 -260792495 + MIR3 SINE MIR 89 187 -21 538 282 105 6 chr1 21401419 21401600 -260792064 + MIR SINE MIR 61 259 -3 408 207 30 52 chr1 21401922 21402057 -260791607 + MIR SINE MIR 19 150 -58 2372 106 0 3 chr1 21402058 21402361 -260791303 + AluSq SINE Alu 2 303 -10 352 248 68 17 chr1 21403027 21403144 -260790520 - MER5A DNA MER1_type -59 130 8 228 208 19 0 chr1 21403173 21403226 -260790438 - MLT1L LTR MaLR -58 557 504 455 149 14 0 chr1 21404053 21404127 -260789537 - Charlie3 DNA MER1_type -4 2706 2632 540 308 69 21 chr1 21404187 21404564 -260789100 - L2 LINE L2 -403 2911 2517 190 303 40 0 chr1 21404562 21404638 -260789026 + MIR SINE MIR 165 243 -19 * 1055 253 4 9 chr1 21405167 21405396 -260788268 + MIR SINE MIR 20 247 -15 2382 95 0 3 chr1 21405899 21406205 -260787459 - AluSq SINE Alu -8 305 1 2189 133 3 0 chr1 21407155 21407463 -260786201 + AluSx SINE Alu 1 309 -3 1431 254 17 3 chr1 21407525 21407887 -260785777 - LTR16A LTR ERVL -62 388 22 555 228 44 13 chr1 21407892 21408050 -260785614 + MIR SINE MIR 88 250 -12 527 284 147 0 chr1 21408109 21408334 -260785330 + MIR SINE MIR 2 259 -3 906 183 61 19 chr1 21408549 21408764 -260784900 + MIR SINE MIR 20 241 -21 378 276 22 103 chr1 21408949 21409134 -260784530 - MIR SINE MIR -10 252 83 2156 94 3 44 chr1 21409307 21409624 -260784040 - AluSq SINE Alu 0 305 1 223 337 10 20 chr1 21409633 21409731 -260783933 - MIR3 SINE MIR -98 110 14 798 248 37 9 chr1 21409732 21409950 -260783714 + MER58A DNA MER1_type 1 224 0 2162 128 26 7 chr1 21410149 21410455 -260783209 - AluSx SINE Alu 0 312 1 203 224 41 0 chr1 21410678 21410727 -260782937 + L2 LINE L2 3251 3301 -12 2391 101 3 0 chr1 21410996 21411302 -260782362 + AluSx SINE Alu 4 310 -2 759 245 130 71 chr1 21411312 21411595 -260782069 + MLT1L LTR MaLR 100 365 -250 1975 154 3 3 chr1 21411595 21411894 -260781770 - AluSx SINE Alu -12 300 2 759 245 130 71 chr1 21411894 21412019 -260781645 + MLT1L LTR MaLR 365 481 -134 1395 219 68 7 chr1 21412019 21412311 -260781353 + AluJo SINE Alu 2 311 -1 759 245 130 71 chr1 21412311 21412331 -260781333 + MLT1L LTR MaLR 481 610 -5 909 234 25 62 chr1 21412414 21412485 -260781179 - MIR SINE MIR -3 259 187 2099 109 33 0 chr1 21412485 21412812 -260780852 - AluSx SINE Alu 0 336 1 909 234 25 62 chr1 21412812 21412983 -260780681 - MIR SINE MIR -75 187 25 268 325 79 48 chr1 21413023 21413251 -260780413 - L2 LINE L2 -5 3267 3033 200 336 106 19 chr1 21413504 21413712 -260779952 + L2 LINE L2 2447 2672 -642 369 328 8 0 chr1 21413909 21414037 -260779627 + L2 LINE L2 3185 3313 0 289 320 25 16 chr1 21414060 21414182 -260779482 + L2 LINE L2 3150 3272 0 1373 114 19 19 chr1 21414242 21414452 -260779212 - MER1B DNA MER1_type 0 339 130 203 343 76 0 chr1 21414453 21414558 -260779106 + MIR SINE MIR 102 214 -48 815 156 0 0 chr1 21414577 21414699 -260778965 - MER1B DNA MER1_type -175 122 1 527 274 50 53 chr1 21415018 21415317 -260778347 + L1ME3 LINE L1 5052 5349 -797 600 75 0 21 chr1 21415323 21415417 -260778247 + AluSg/x SINE Alu 214 305 -5 1899 151 17 20 chr1 21415426 21415725 -260777939 + AluJo SINE Alu 1 298 -14 3123 202 61 19 chr1 21415728 21415885 -260777779 + L1ME3 LINE L1 5367 5516 -646 2629 65 0 0 chr1 21415885 21416193 -260777471 - AluY SINE Alu -3 308 1 3123 202 61 19 chr1 21416193 21416791 -260776873 + L1ME3 LINE L1 5516 6154 -8 189 171 0 0 chr1 21416791 21416826 -260776838 + GA-rich Low_complexity Low_complexity 4 38 0 207 122 0 49 chr1 21416840 21416881 -260776783 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 258 305 0 0 chr1 21416884 21416943 -260776721 + polypurine Low_complexity Low_complexity 5 63 0 625 271 36 61 chr1 21417038 21417285 -260776379 + MIR SINE MIR 16 256 -6 234 260 0 0 chr1 21417319 21417369 -260776295 + MIR SINE MIR 198 247 -15 * 336 261 133 39 chr1 21417367 21417547 -260776117 - MIR SINE MIR 0 262 66 308 268 169 56 chr1 21417797 21418010 -260775654 - MIR SINE MIR -6 256 20 344 178 41 0 chr1 21418033 21418106 -260775558 - MIR SINE MIR -110 152 77 2329 115 0 0 chr1 21418499 21418803 -260774861 + AluSx SINE Alu 1 304 -8 634 278 139 24 chr1 21418854 21418993 -260774671 + L2 LINE L2 2659 2781 -532 1457 106 13 47 chr1 21418993 21419229 -260774435 + MER30 DNA MER1_type 2 229 -1 634 278 139 24 chr1 21419229 21419464 -260774200 + L2 LINE L2 2781 2988 -325 448 95 81 0 chr1 21419464 21419538 -260774126 - MADE1 DNA Mariner 0 80 1 634 278 139 24 chr1 21419538 21419607 -260774057 + L2 LINE L2 2988 3048 -265 187 31 62 0 chr1 21419607 21419639 -260774025 + T-rich Low_complexity Low_complexity 2 35 0 634 278 139 24 chr1 21419639 21419661 -260774003 + L2 LINE L2 3048 3179 -134 3716 84 11 4 chr1 21419816 21420350 -260773314 + L1PA10 LINE L1 5627 6164 -4 2096 136 58 3 chr1 21420865 21421210 -260772454 + THE1B LTR MaLR 1 364 0 182 125 62 0 chr1 21421514 21421546 -260772118 + L2 LINE L2 3274 3307 -6 2115 148 3 0 chr1 21421788 21422092 -260771572 - AluSx SINE Alu -7 305 1 615 269 89 14 chr1 21422818 21423279 -260770385 + L2 LINE L2 2549 3056 -257 2908 144 29 20 chr1 21423628 21424189 -260769475 + L1MB2 LINE L1 5599 6164 -7 2402 92 3 13 chr1 21424212 21424528 -260769136 + AluSq SINE Alu 1 313 0 25 31 0 0 chr1 21424524 21424556 -260769108 + AT_rich Low_complexity Low_complexity 1 32 0 368 299 109 7 chr1 21424561 21424708 -260768956 - MIR SINE MIR -16 246 85 416 315 99 6 chr1 21425132 21425313 -260768351 - MIR SINE MIR -58 204 7 2467 92 0 0 chr1 21425590 21425896 -260767768 - AluSc SINE Alu -3 306 1 364 289 116 0 chr1 21425900 21426073 -260767591 + L2 LINE L2 3116 3308 -5 2217 106 23 0 chr1 21426612 21426913 -260766751 + AluSg SINE Alu 1 308 -2 198 263 0 0 chr1 21426915 21426972 -260766692 + G-rich Low_complexity Low_complexity 6 62 0 * 612 125 0 0 chr1 21426960 21427056 -260766608 + (GAAAA)n Simple_repeat Simple_repeat 5 100 0 2460 97 0 0 chr1 21427342 21427652 -260766012 + AluSx SINE Alu 1 310 -2 393 215 0 74 chr1 21428239 21428360 -260765304 - MLT1K LTR MaLR -7 581 470 305 300 54 15 chr1 21428479 21428609 -260765055 + MIR SINE MIR 116 250 -12 1985 266 83 24 chr1 21428879 21429315 -260764349 + L2 LINE L2 121 530 -2784 1903 141 3 30 chr1 21429315 21429613 -260764051 - AluSx SINE Alu -20 292 3 1985 266 83 24 chr1 21429613 21430053 -260763611 + L2 LINE L2 530 1049 -2265 1409 201 28 18 chr1 21430136 21430419 -260763245 - AluJo SINE Alu -26 286 1 386 265 27 7 chr1 21430419 21430566 -260763098 + L2 LINE L2 1206 1355 -1959 * 577 191 254 10 chr1 21430564 21430773 -260762891 - L2 LINE L2 -1238 2076 1817 280 189 4 0 chr1 21430773 21430827 -260762837 + L1ME2 LINE L1 6107 6162 0 2253 123 0 0 chr1 21431043 21431345 -260762319 - AluSx SINE Alu -10 302 1 3252 152 22 19 chr1 21431377 21431426 -260762238 - L1MB3 LINE L1 -2 6181 6134 2267 91 13 13 chr1 21431426 21431724 -260761940 - AluSp SINE Alu -15 298 1 3252 152 22 19 chr1 21431724 21432261 -260761403 - L1MB3 LINE L1 -49 6134 5593 1067 162 0 22 chr1 21432272 21432457 -260761207 - FRAM SINE Alu 0 176 1 1058 167 5 42 chr1 21432457 21432672 -260760992 - L1MB3 LINE L1 -563 5608 5402 4932 154 24 36 chr1 21432687 21433376 -260760288 - L1MC1 LINE L1 -320 6013 5318 2232 100 0 7 chr1 21433376 21433689 -260759975 - AluSx SINE Alu 0 311 1 4932 154 24 36 chr1 21433689 21433864 -260759800 - L1MC1 LINE L1 -1015 5318 5142 2433 99 0 0 chr1 21433864 21434176 -260759488 - AluSx SINE Alu 0 312 1 4932 154 24 36 chr1 21434176 21434377 -260759287 - L1MC1 LINE L1 -1191 5142 4946 1393 203 14 3 chr1 21434377 21434668 -260758996 + L2 LINE L2 2392 2685 -629 7827 215 33 38 chr1 21434689 21435960 -260757704 + L1MB7 LINE L1 14 1291 -5353 2313 92 0 10 chr1 21435960 21436266 -260757398 + AluY SINE Alu 1 303 -8 7827 215 33 38 chr1 21436266 21436950 -260756714 + L1MB7 LINE L1 1291 1977 -4667 2294 116 3 0 chr1 21436950 21437261 -260756403 + AluSx SINE Alu 1 312 0 2278 120 3 0 chr1 21437263 21437571 -260756093 + AluSp SINE Alu 1 309 -4 7827 215 33 38 chr1 21437571 21438053 -260755611 + L1MB7 LINE L1 1978 2461 -4183 2299 88 7 13 chr1 21438053 21438358 -260755306 + AluSq SINE Alu 1 303 -10 7827 215 33 38 chr1 21438358 21438432 -260755232 + L1MB7 LINE L1 2461 2534 -4110 2172 102 0 3 chr1 21438432 21438750 -260754914 + AluSx SINE Alu 2 318 0 7827 215 33 38 chr1 21438750 21439453 -260754211 + L1MB7 LINE L1 2534 3245 -3399 1278 211 29 36 chr1 21439454 21439563 -260754101 + AluJo SINE Alu 32 140 -189 2462 84 3 0 chr1 21439563 21439862 -260753802 + AluSq SINE Alu 1 300 -13 1278 211 29 36 chr1 21439862 21440052 -260753612 + AluJo SINE Alu 140 329 0 2044 127 20 0 chr1 21440052 21440344 -260753320 + AluSp SINE Alu 2 299 -14 9563 185 27 69 chr1 21440348 21441577 -260752087 + L1MB7 LINE L1 3249 4528 -2154 710 220 0 0 chr1 21441577 21441709 -260751955 + FLAM_A SINE Alu 1 132 -1 9563 185 27 69 chr1 21441709 21441946 -260751718 + L1MB7 LINE L1 4528 4773 -1909 2089 120 29 19 chr1 21441946 21442255 -260751409 - AluSx SINE Alu 0 312 1 9563 185 27 69 chr1 21442255 21443380 -260750284 + L1MB7 LINE L1 4773 5644 -1038 1763 164 7 20 chr1 21443380 21443684 -260749980 + AluJb SINE Alu 5 304 -8 9563 185 27 69 chr1 21443684 21444664 -260749000 + L1MB7 LINE L1 5644 6663 -19 2281 226 129 62 chr1 21444672 21444935 -260748729 + L1MC4 LINE L1 6479 6723 -1085 1997 145 0 3 chr1 21444935 21445253 -260748411 + AluSx SINE Alu 1 317 0 2281 226 129 62 chr1 21445253 21445536 -260748128 + L1MC4 LINE L1 6723 6986 -822 2226 100 10 0 chr1 21445536 21445825 -260747839 + AluSq SINE Alu 1 292 -21 2281 226 129 62 chr1 21445825 21446001 -260747663 + L1MC4 LINE L1 6986 7149 -659 2123 86 57 0 chr1 21446001 21446280 -260747384 + AluSg SINE Alu 1 295 -15 2281 226 129 62 chr1 21446280 21446765 -260746899 + L1MC4 LINE L1 7149 7687 -121 887 182 14 0 chr1 21446797 21446945 -260746719 - MER63 DNA MER1_type -55 781 6 854 171 0 0 chr1 21447010 21447139 -260746525 + FLAM_C SINE Alu 1 129 -14 2103 130 0 3 chr1 21447261 21447560 -260746104 - AluSx SINE Alu -14 298 1 186 306 0 0 chr1 21447637 21447686 -260745978 + L2 LINE L2 3214 3262 -10 2053 93 50 4 chr1 21447837 21448116 -260745548 + AluSg1 SINE Alu 1 292 -17 666 143 143 25 chr1 21448136 21448255 -260745409 + FLAM_C SINE Alu 1 133 0 450 36 0 0 chr1 21448680 21448736 -260744928 + (CAAAA)n Simple_repeat Simple_repeat 5 60 0 2076 139 0 0 chr1 21449145 21449440 -260744224 + AluSx SINE Alu 1 295 -17 413 315 89 0 chr1 21450693 21450906 -260742758 - MIR SINE MIR -10 252 21 2134 70 0 0 chr1 21451118 21451388 -260742276 - MER41A LTR ERV1 -1 553 284 418 130 0 39 chr1 21451392 21451469 -260742195 + Alu SINE Alu 238 311 -1 9025 86 26 2 chr1 21451470 21452433 -260741231 - HUERS-P1 LTR ERV1 -3068 3195 2194 2305 105 3 16 chr1 21452433 21452748 -260740916 + AluSp SINE Alu 1 311 -2 9025 86 26 2 chr1 21452748 21453000 -260740664 - HUERS-P1 LTR ERV1 -4069 2194 1950 4543 158 71 23 chr1 21452984 21453594 -260740070 - HUERS-P1 LTR ERV1 -4171 1775 1196 * 186 71 0 0 chr1 21453594 21453622 -260740042 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4543 158 71 23 chr1 21453622 21454597 -260739067 - HUERS-P1 LTR ERV1 -4750 1196 27 4029 105 2 16 chr1 21454677 21454909 -260738755 - MER41A LTR ERV1 0 554 320 2368 81 10 7 chr1 21454909 21455218 -260738446 - AluSq SINE Alu -2 311 2 4029 105 2 16 chr1 21455218 21455547 -260738117 - MER41A LTR ERV1 -234 320 1 223 242 32 0 chr1 21456056 21456118 -260737546 - MIR SINE MIR -67 141 78 2322 106 6 0 chr1 21456206 21456517 -260737147 - AluSq SINE Alu 0 313 1 408 143 0 0 chr1 21456601 21456664 -260737000 - MER53 DNA DNA 0 189 127 1784 160 0 17 chr1 21456787 21457111 -260736553 - AluJb SINE Alu 0 312 3 360 256 286 12 chr1 21457127 21457295 -260736369 + MIR SINE MIR 49 262 0 447 163 45 203 chr1 21457514 21457614 -260736050 - MER69A DNA AcHobo -2351 175 121 2325 101 3 7 chr1 21457614 21457922 -260735742 + AluSg SINE Alu 1 307 -3 447 163 45 203 chr1 21457922 21458023 -260735641 - MER69A DNA AcHobo -2405 121 6 855 253 40 100 chr1 21458034 21458552 -260735112 + MLT1J LTR MaLR 25 511 0 387 294 32 9 chr1 21458556 21458674 -260734990 + MIR SINE MIR 40 163 -45 35 41 0 0 chr1 21458674 21458723 -260734941 + AT_rich Low_complexity Low_complexity 1 49 0 480 340 32 51 chr1 21458736 21459090 -260734574 + L1ME4a LINE L1 4812 5156 -990 2110 133 0 3 chr1 21459090 21459384 -260734280 - AluSg SINE Alu -17 293 1 480 340 32 51 chr1 21459384 21459497 -260734167 + L1ME4a LINE L1 5156 5270 -876 1266 188 38 25 chr1 21459507 21459713 -260733951 + MER33 DNA MER1_type 1 203 -2382 252 0 0 0 chr1 21459713 21459741 -260733923 + (TA)n Simple_repeat Simple_repeat 2 29 0 1964 147 10 7 chr1 21459741 21460047 -260733617 - AluJb SINE Alu -5 307 1 1266 188 38 25 chr1 21460047 21460159 -260733505 + MER33 DNA MER1_type 202 324 0 530 317 33 13 chr1 21460160 21460463 -260733201 + L1ME4a LINE L1 5260 5568 -791 2172 132 0 0 chr1 21460599 21460902 -260732762 - AluSq SINE Alu -10 303 1 260 243 43 0 chr1 21460910 21460980 -260732684 + L1ME4a LINE L1 5582 5654 -2154 23 0 0 0 chr1 21461456 21461479 -260732185 + AT_rich Low_complexity Low_complexity 1 23 0 668 156 65 54 chr1 21461502 21461688 -260731976 + MER53 DNA DNA 2 189 0 517 240 47 13 chr1 21462035 21462211 -260731453 + MIR SINE MIR 6 184 -60 317 195 0 12 chr1 21462269 21462351 -260731313 + (TA)n Simple_repeat Simple_repeat 1 81 0 289 149 45 45 chr1 21462364 21462431 -260731233 + L1ME4a LINE L1 5944 6010 -111 2459 84 3 0 chr1 21462937 21463236 -260730428 + AluSp SINE Alu 1 300 -13 2261 114 0 7 chr1 21463247 21463555 -260730109 + AluSc SINE Alu 1 306 -3 447 227 103 43 chr1 21464460 21464645 -260729019 + MIR SINE MIR 67 262 0 829 211 38 19 chr1 21465276 21465489 -260728175 + MIR SINE MIR 14 230 -32 228 241 102 37 chr1 21465617 21465725 -260727939 + MIR SINE MIR 47 161 -101 250 320 48 32 chr1 21465973 21466098 -260727566 + L1MEd LINE L1 527 653 -5466 1450 119 0 0 chr1 21466180 21466374 -260727290 + AluSg SINE Alu 17 210 -100 417 103 0 0 chr1 21466374 21466432 -260727232 + AluSq/x SINE Alu 78 135 -178 2021 141 0 3 chr1 21466432 21466723 -260726941 + AluSx SINE Alu 1 290 -22 346 301 61 61 chr1 21466731 21467193 -260726471 + L1MEd LINE L1 730 1191 -4928 2466 77 3 0 chr1 21467203 21467501 -260726163 + AluSp SINE Alu 1 299 -14 2186 111 0 0 chr1 21467828 21468125 -260725539 - AluSg SINE Alu -13 297 1 388 207 86 17 chr1 21468154 21468270 -260725394 + L2 LINE L2 3148 3271 -1 332 188 40 89 chr1 21468269 21468370 -260725294 + MIR SINE MIR 97 192 -70 * 219 259 0 0 chr1 21468414 21468468 -260725196 + MIR SINE MIR 101 154 -108 583 228 44 38 chr1 21469165 21469323 -260724341 - MLT1J2 LTR MaLR 0 450 292 400 268 18 9 chr1 21469317 21469429 -260724235 - MLT1J1 LTR MaLR -281 165 53 * 192 125 0 0 chr1 21469509 21469541 -260724123 + (CAT)n Simple_repeat Simple_repeat 2 33 0 521 259 30 0 chr1 21469547 21469678 -260723986 - MIR SINE MIR -117 145 11 618 293 54 20 chr1 21469779 21470076 -260723588 + L2 LINE L2 3005 3311 -2 180 0 0 0 chr1 21470166 21470186 -260723478 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 241 344 45 40 chr1 21471041 21471416 -260722248 - L1ME4a LINE L1 -20 6101 5725 1939 159 0 0 chr1 21471496 21471785 -260721879 - AluSx SINE Alu -23 289 1 2224 136 0 0 chr1 21472296 21472604 -260721060 - AluSx SINE Alu -2 310 3 480 269 31 19 chr1 21472864 21473024 -260720640 - MIR SINE MIR -92 170 9 1874 161 6 16 chr1 21473248 21473559 -260720105 + AluJo SINE Alu 1 308 -4 2359 94 3 0 chr1 21474057 21474354 -260719310 + AluSx SINE Alu 1 298 -14 2429 85 3 3 chr1 21474697 21475002 -260718662 + AluSg SINE Alu 1 305 -5 351 224 104 57 chr1 21475028 21475108 -260718556 + L1ME4a LINE L1 5902 5977 -144 568 113 0 0 chr1 21475108 21475188 -260718476 - MER116 DNA Mariner 0 80 1 351 224 104 57 chr1 21475188 21475299 -260718365 + L1ME4a LINE L1 5977 6102 -19 2315 107 0 0 chr1 21475300 21475609 -260718055 - AluSx SINE Alu -3 309 1 470 274 92 26 chr1 21475722 21475875 -260717789 + MIR3 SINE MIR 35 197 -11 670 110 0 0 chr1 21476363 21476463 -260717201 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 257 159 0 0 chr1 21476463 21476501 -260717163 - Alu SINE Alu 0 400 263 1945 115 7 3 chr1 21476465 21476753 -260716911 - AluSg1 SINE Alu -20 289 1 258 320 131 48 chr1 21476953 21477159 -260716505 - MIR SINE MIR -21 241 19 1917 152 0 9 chr1 21477325 21477640 -260716024 + AluSx SINE Alu 1 312 0 753 93 0 0 chr1 21477701 21477808 -260715856 + (CCA)n Simple_repeat Simple_repeat 1 107 0 2239 125 27 29 chr1 21477913 21478289 -260715375 + THE1C LTR MaLR 1 375 0 1795 157 0 27 chr1 21478354 21478654 -260715010 + AluJb SINE Alu 1 292 -20 2155 85 0 14 chr1 21478662 21478956 -260714708 + AluY SINE Alu 1 290 -21 21 36 0 0 chr1 21478956 21478984 -260714680 + AT_rich Low_complexity Low_complexity 1 28 0 2097 136 3 0 chr1 21479089 21479397 -260714267 + AluSx SINE Alu 1 309 -3 929 125 0 22 chr1 21479718 21479854 -260713810 + FLAM_C SINE Alu 1 133 0 28 22 0 22 chr1 21479857 21479877 -260713787 + AT_rich Low_complexity Low_complexity 1 20 -25 2129 102 0 3 chr1 21479877 21480171 -260713493 + AluSq SINE Alu 2 294 -19 28 22 0 22 chr1 21480171 21480196 -260713468 + AT_rich Low_complexity Low_complexity 20 45 0 647 203 0 0 chr1 21480343 21480461 -260713203 + FRAM SINE Alu 48 165 -11 927 52 0 0 chr1 21480642 21480757 -260712907 - L1PA8 LINE L1 0 6172 6058 436 266 7 0 chr1 21480764 21480903 -260712761 - L1MC4a LINE L1 -1983 5825 5686 1291 140 0 18 chr1 21481316 21481545 -260712119 + AluJb SINE Alu 80 304 -8 314 283 89 45 chr1 21481548 21481766 -260711898 + LTR43 LTR ERV1 221 366 -146 4289 98 29 0 chr1 21481766 21482361 -260711303 - LTR9 LTR ERV1 0 612 1 314 283 89 45 chr1 21482361 21482454 -260711210 + LTR43 LTR ERV1 366 453 -59 690 152 19 0 chr1 21482540 21482645 -260711019 - LTR9 LTR ERV1 0 612 506 1693 127 0 78 chr1 21482708 21483046 -260710618 + AluSx SINE Alu 1 314 0 335 260 22 8 chr1 21483055 21483163 -260710501 - L1MC4a LINE L1 -541 5580 5487 1701 151 3 14 chr1 21483261 21483545 -260710119 - AluJo SINE Alu -25 287 7 1153 83 0 0 chr1 21483764 21483921 -260709743 - AluSq SINE Alu -1 312 156 590 94 12 0 chr1 21483921 21484006 -260709658 - AluSq SINE Alu -226 87 2 4532 110 14 30 chr1 21484251 21484953 -260708711 + L1PA16 LINE L1 5408 6098 -68 784 110 0 63 chr1 21484953 21485080 -260708584 - AluSq/x SINE Alu -193 120 2 2383 65 3 0 chr1 21485091 21485399 -260708265 - AluY SINE Alu -2 309 1 288 288 50 0 chr1 21485400 21485480 -260708184 - MER81 DNA DNA -30 84 1 327 185 230 14 chr1 21485578 21485719 -260707945 + MIR SINE MIR 20 183 -25 287 200 40 13 chr1 21486656 21486731 -260706933 - L2 LINE L2 -255 3058 2982 834 113 0 8 chr1 21487293 21487417 -260706247 - FLAM_C SINE Alu -20 123 1 302 244 26 13 chr1 21487633 21487711 -260705953 + L2 LINE L2 3189 3267 -5 602 202 42 0 chr1 21488142 21488261 -260705403 - Charlie1 DNA MER1_type 0 2761 2638 982 137 128 39 chr1 21488267 21488471 -260705193 - Charlie1 DNA MER1_type -2534 227 6 2061 100 0 7 chr1 21489109 21489388 -260704276 - AluSg SINE Alu -31 279 3 468 264 33 55 chr1 21490120 21490302 -260703362 + MER5B DNA MER1_type 1 178 0 903 153 15 56 chr1 21490325 21490521 -260703143 - MER5A DNA MER1_type -1 188 1 1097 198 73 42 chr1 21490529 21490707 -260702957 - MER33 DNA MER1_type -2261 324 130 2155 99 6 10 chr1 21490707 21491020 -260702644 - AluSp SINE Alu -1 312 1 1097 198 73 42 chr1 21491020 21491154 -260702510 - MER33 DNA MER1_type -2455 130 2 540 298 312 5 chr1 21491245 21491678 -260701986 - L3 LINE CR1 -204 1373 808 1276 133 22 49 chr1 21491682 21491907 -260701757 + MER20 DNA MER1_type 1 219 0 184 313 94 0 chr1 21492055 21492119 -260701545 - L3 LINE CR1 -1176 401 332 596 240 213 6 chr1 21492245 21492428 -260701236 + MIR SINE MIR 36 256 -6 235 250 191 0 chr1 21492503 21492587 -260701077 - L1ME LINE L1 -200 5921 5822 233 316 87 6 chr1 21493707 21493830 -260699834 - MIR SINE MIR -76 132 34 270 219 55 14 chr1 21494280 21494353 -260699311 - L2 LINE L2 0 3313 3238 363 204 133 44 chr1 21494570 21494683 -260698981 + MIR SINE MIR 119 241 -21 197 161 0 0 chr1 21494924 21494955 -260698709 - L2 LINE L2 -9 3304 3274 391 373 90 6 chr1 21495022 21495365 -260698299 - L2 LINE L2 -582 2732 2361 312 254 215 0 chr1 21495975 21496105 -260697559 + L2 LINE L2 3115 3272 0 301 322 164 39 chr1 21496210 21496760 -260696904 + L2 LINE L2 2420 3053 -219 1039 204 92 46 chr1 21496864 21497165 -260696499 - MER77 LTR ERV1 -7 598 307 186 43 0 0 chr1 21497167 21497190 -260696474 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 361 202 12 48 chr1 21497297 21497381 -260696283 - MER77 LTR ERV1 -471 134 54 194 246 105 0 chr1 21497425 21497482 -260696182 + L2 LINE L2 3112 3174 -98 509 293 192 5 chr1 21497491 21497689 -260695975 + MIR SINE MIR 13 247 -15 239 200 18 127 chr1 21498526 21498691 -260694973 - L1ME4a LINE L1 -3 6118 5972 871 204 82 41 chr1 21498914 21499183 -260694481 - L1ME1 LINE L1 -5 6161 5882 28 0 0 0 chr1 21500005 21500033 -260693631 + AT_rich Low_complexity Low_complexity 1 28 0 223 121 0 0 chr1 21500436 21500469 -260693195 + MER91B DNA MER1_type 28 60 -130 606 173 62 78 chr1 21500658 21500837 -260692827 + MER69A DNA AcHobo 2 177 0 298 154 0 187 chr1 21500845 21500936 -260692728 - MER69A DNA AcHobo -103 74 1 22 0 0 0 chr1 21501426 21501448 -260692216 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 21501544 21501578 -260692086 + AT_rich Low_complexity Low_complexity 1 34 0 2246 77 7 0 chr1 21501585 21501885 -260691779 - AluSp SINE Alu -11 302 1 315 337 41 35 chr1 21501885 21502057 -260691607 - L1ME4a LINE L1 -21 6100 5928 2262 84 3 0 chr1 21502084 21502382 -260691282 + AluSp SINE Alu 1 299 -14 1600 196 0 0 chr1 21502830 21503126 -260690538 - AluJb SINE Alu -15 297 2 1426 282 92 48 chr1 21503384 21504216 -260689448 - L1MC4a LINE L1 -752 5394 4600 1713 155 48 0 chr1 21504216 21504506 -260689158 - AluJb SINE Alu -8 304 1 1426 282 92 48 chr1 21504506 21504922 -260688742 - L1MC4a LINE L1 -1546 4600 4611 2116 76 53 23 chr1 21504922 21505226 -260688438 - AluSq SINE Alu 0 313 1 1426 282 92 48 chr1 21505226 21505313 -260688351 - L1MC4a LINE L1 -1534 4612 4530 361 289 67 30 chr1 21505345 21505480 -260688184 - L1MC4a LINE L1 -1686 4460 4321 4553 188 53 11 chr1 21505520 21506230 -260687434 - L1MB5 LINE L1 0 6174 5496 2246 72 0 3 chr1 21506230 21506521 -260687143 - AluY SINE Alu -21 290 1 4553 188 53 11 chr1 21506521 21506932 -260686732 - L1MB5 LINE L1 -678 5496 4058 369 269 32 59 chr1 21506939 21507052 -260686612 - L1ME4a LINE L1 -325 5796 5688 1954 139 0 13 chr1 21507052 21507368 -260686296 - AluJb SINE Alu 0 312 1 369 269 32 59 chr1 21507368 21507440 -260686224 - L1ME4a LINE L1 -433 5688 5616 2249 95 0 0 chr1 21509477 21509772 -260683892 + AluSg SINE Alu 1 295 -15 486 235 206 0 chr1 21509979 21510115 -260683549 + MER3 DNA MER1_type 46 209 0 288 242 16 0 chr1 21510062 21510124 -260683540 - MER3 DNA MER1_type -108 101 39 * 511 227 43 87 chr1 21510893 21511100 -260682564 - L1ME LINE L1 -365 5756 5559 2294 90 0 0 chr1 21515405 21515704 -260677960 - AluSg SINE Alu -11 299 1 241 225 112 11 chr1 21517886 21517975 -260675689 + L3 LINE CR1 1450 1547 -30 233 371 147 23 chr1 21518473 21518780 -260674884 - L2 LINE L2 -8 3264 2920 1357 188 3 24 chr1 21518926 21519218 -260674446 + AluJo SINE Alu 1 286 -26 311 160 120 13 chr1 21519542 21519617 -260674047 - MIR SINE MIR -156 106 24 1564 169 11 0 chr1 21519733 21520012 -260673652 + AluJo SINE Alu 1 282 -30 190 274 155 12 chr1 21520433 21520517 -260673147 + L2 LINE L2 3218 3313 0 358 263 0 0 chr1 21520824 21520900 -260672764 + MIR SINE MIR 187 262 0 194 347 74 33 chr1 21520932 21521053 -260672611 - MIR SINE MIR -20 242 117 499 240 153 33 chr1 21521067 21521217 -260672447 - MER5A DNA MER1_type -8 181 14 2530 43 0 0 chr1 21521429 21521734 -260671930 + AluY SINE Alu 1 305 -6 184 331 88 22 chr1 21521896 21522032 -260671632 + L2 LINE L2 2284 2428 -886 2162 93 7 3 chr1 21522425 21522726 -260670938 - AluSp SINE Alu -11 302 1 2528 45 0 3 chr1 21523487 21523799 -260669865 + AluY SINE Alu 1 311 0 216 196 130 33 chr1 21524038 21524130 -260669534 + L2 LINE L2 3171 3271 -1 316 273 45 65 chr1 21525520 21525674 -260667990 - MIR3 SINE MIR -57 151 1 182 172 103 52 chr1 21525674 21525724 -260667940 - L3 LINE CR1 -99 1478 1426 243 0 0 0 chr1 21526943 21526970 -260666694 + (GGGAGA)n Simple_repeat Simple_repeat 3 29 0 217 342 34 33 chr1 21528323 21528446 -260665218 + MIR SINE MIR 27 148 -62 337 289 125 8 chr1 21528503 21528631 -260665033 - MIR SINE MIR -6 256 114 403 218 97 26 chr1 21528684 21528911 -260664753 - ORSL DNA AcHobo -2 273 2 2154 115 0 0 chr1 21529148 21529453 -260664211 + AluSq SINE Alu 1 305 -8 368 273 50 29 chr1 21530125 21530335 -260663329 + MIR3 SINE MIR 37 254 -8 627 207 0 0 chr1 21530593 21530743 -260662921 + (CAT)n Simple_repeat Simple_repeat 1 150 0 922 143 41 0 chr1 21530745 21530892 -260662772 + MSTA LTR MaLR 3 155 -273 4140 73 6 20 chr1 21531069 21531606 -260662058 - LTR14 LTR ERVK -19 529 1 11542 189 20 11 chr1 21531608 21534711 -260658953 - HERVKC4 LTR ERVK -6 7392 3517 3224 292 12 3 chr1 21534699 21535607 -260658057 - HERVK14C LTR ERVK -5640 1777 862 * 5290 123 7 3 chr1 21535588 21536342 -260657322 - HERVK14C LTR ERVK -4505 757 1 4069 83 14 20 chr1 21536342 21536893 -260656771 - LTR14 LTR ERVK 0 548 1 763 110 189 0 chr1 21536896 21537023 -260656641 + MSTA LTR MaLR 276 426 -2 887 173 0 7 chr1 21537032 21537337 -260656327 + (CAT)n Simple_repeat Simple_repeat 1 302 0 298 154 39 51 chr1 21537338 21537416 -260656248 + (CACCAT)n Simple_repeat Simple_repeat 2 78 0 386 168 0 32 chr1 21537581 21537676 -260655988 + (CACCAT)n Simple_repeat Simple_repeat 6 97 0 362 297 82 47 chr1 21537889 21538039 -260655625 - L2 LINE L2 -58 3255 3112 2354 95 0 0 chr1 21538039 21538345 -260655319 + AluSg SINE Alu 1 306 -4 362 297 82 47 chr1 21538345 21538598 -260655066 - L2 LINE L2 -201 3112 2838 766 237 98 108 chr1 21539251 21539312 -260654352 - MLT1H LTR MaLR -5 544 484 2127 106 0 20 chr1 21539312 21539614 -260654050 - AluSx SINE Alu -16 296 1 766 237 98 108 chr1 21539614 21540101 -260653563 - MLT1H LTR MaLR -65 484 1 1216 180 14 18 chr1 21540158 21540375 -260653289 - MER58A DNA MER1_type -8 216 1 389 213 148 19 chr1 21540507 21540615 -260653049 - L2 LINE L2 0 3313 3192 346 271 115 89 chr1 21540616 21541033 -260652631 - MLT1K LTR MaLR -20 568 141 630 272 12 23 chr1 21541331 21541504 -260652160 - MIR3 SINE MIR -19 189 19 464 211 22 11 chr1 21541701 21541791 -260651873 + MIR SINE MIR 25 115 -147 1980 89 0 28 chr1 21542016 21542321 -260651343 + AluSq SINE Alu 11 307 0 1188 237 52 75 chr1 21542449 21542720 -260650944 - MLT1J1 LTR MaLR -2 444 226 3503 79 8 4 chr1 21542720 21543191 -260650473 - L1PA13 LINE L1 -1 6162 5690 1188 237 52 75 chr1 21543191 21543371 -260650293 - MLT1J1 LTR MaLR -220 226 43 314 296 158 46 chr1 21543409 21543605 -260650059 + L2 LINE L2 3095 3312 -1 22 80 0 0 chr1 21543610 21543660 -260650004 + AT_rich Low_complexity Low_complexity 1 50 0 274 264 81 54 chr1 21543660 21543879 -260649785 - MLT1K LTR MaLR -12 603 369 2023 74 53 33 chr1 21544443 21544742 -260648922 - AluY SINE Alu -4 307 3 273 277 84 32 chr1 21545262 21545417 -260648247 - L2 LINE L2 -180 3092 2930 232 284 0 15 chr1 21545801 21545868 -260647796 + LTR67 LTR ERVL 490 555 -2 306 271 82 0 chr1 21546160 21546245 -260647419 + L2 LINE L2 3219 3310 -3 308 296 98 82 chr1 21546324 21546895 -260646769 + ERVL LTR ERVL 993 1572 -4192 991 305 122 49 chr1 21547124 21547360 -260646304 - HAL1 LINE L1 -665 1842 1625 843 204 204 0 chr1 21547360 21547546 -260646118 + MER58A DNA MER1_type 1 224 0 991 305 122 49 chr1 21547546 21547928 -260645736 - HAL1 LINE L1 -882 1625 1272 2186 86 0 13 chr1 21547928 21548230 -260645434 - AluY SINE Alu -13 298 1 991 305 122 49 chr1 21548230 21548322 -260645342 - HAL1 LINE L1 -1235 1272 1188 1925 120 4 0 chr1 21548322 21548598 -260645066 - AluSq SINE Alu -3 310 34 991 305 122 49 chr1 21548598 21548909 -260644755 - HAL1 LINE L1 -1319 1188 744 414 0 0 0 chr1 21549087 21549133 -260644531 + (TG)n Simple_repeat Simple_repeat 1 46 0 2966 84 65 7 chr1 21549202 21549578 -260644086 + MLT2A1 LTR ERVL 3 407 -37 555 43 0 0 chr1 21549578 21549648 -260644016 + (TA)n Simple_repeat Simple_repeat 2 71 0 2966 84 65 7 chr1 21549648 21549687 -260643977 + MLT2A1 LTR ERVL 407 442 -2 819 262 126 64 chr1 21549700 21550184 -260643480 + MLT1K LTR MaLR 71 584 -4 250 289 173 19 chr1 21551146 21551302 -260642362 - L2 LINE L2 -2 3311 3132 1629 124 11 28 chr1 21551938 21551976 -260641688 - L1P4 LINE L1 -630 5531 5494 2045 125 0 3 chr1 21551976 21552272 -260641392 - AluSx SINE Alu -16 296 2 2041 108 10 0 chr1 21552273 21552561 -260641103 - AluSx SINE Alu -11 301 11 1629 124 11 28 chr1 21552561 21552747 -260640917 - L1P4 LINE L1 -667 5494 5313 2299 75 0 0 chr1 21552747 21553042 -260640622 - AluY SINE Alu -15 296 2 1629 124 11 28 chr1 21553042 21553218 -260640446 - L1P4 LINE L1 -848 5313 5135 1642 134 4 11 chr1 21553219 21553481 -260640183 + L1PA13 LINE L1 5901 6160 -3 1886 130 0 56 chr1 21554005 21554327 -260639337 + AluSx SINE Alu 1 304 -8 270 179 0 0 chr1 21554348 21554404 -260639260 + A-rich Low_complexity Low_complexity 1 56 0 2017 108 0 17 chr1 21554937 21555234 -260638430 - AluSq SINE Alu -21 292 1 2012 105 0 18 chr1 21555246 21555532 -260638132 - AluSg SINE Alu -15 295 15 239 289 256 11 chr1 21555632 21555722 -260637942 + MER5A DNA MER1_type 78 189 0 992 166 63 5 chr1 21555848 21556053 -260637611 + MER20 DNA MER1_type 1 217 -2 1606 174 43 13 chr1 21556227 21556526 -260637138 + AluJo SINE Alu 1 308 -4 342 115 0 0 chr1 21556526 21556578 -260637086 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 952 180 33 6 chr1 21556863 21557046 -260636618 + MER5A DNA MER1_type 2 189 0 601 157 26 9 chr1 21557291 21557406 -260636258 - HsTC2 DNA Tc2 -1774 124 8 948 251 64 4 chr1 21557637 21557888 -260635776 - MLT1J LTR MaLR -1 510 245 267 242 144 13 chr1 21557895 21558048 -260635616 - L2 LINE L2 -1155 2159 1987 1301 280 83 26 chr1 21558329 21558700 -260634964 + LTR33 LTR ERVL 1 408 -113 2201 188 39 31 chr1 21558700 21559157 -260634507 - LOR1b LTR ERV1 0 461 1 1301 280 83 26 chr1 21559157 21559278 -260634386 + LTR33 LTR ERVL 408 521 0 3028 253 98 17 chr1 21559280 21560307 -260633357 + L2 LINE L2 1840 2950 -364 1192 203 63 12 chr1 21560307 21560668 -260632996 + MER66A LTR ERV1 28 438 -40 847 258 28 16 chr1 21560668 21560920 -260632744 + L2 LINE L2 2938 3192 -121 1254 91 205 51 chr1 21560990 21561244 -260632420 - AluSg SINE Alu -17 293 1 220 219 0 0 chr1 21561281 21561322 -260632342 + L2 LINE L2 3268 3308 -5 743 222 7 7 chr1 21562705 21562858 -260630806 - MLT1D LTR MaLR -4 501 349 * 897 166 86 11 chr1 21562846 21563021 -260630643 - MLT1D LTR MaLR -317 188 1 425 194 0 0 chr1 21563321 21563393 -260630271 - LOR1b LTR ERV1 -36 425 354 1491 152 117 72 chr1 21563581 21564010 -260629654 - LTR7 LTR ERV1 -2 448 1 255 344 45 8 chr1 21564628 21564757 -260628907 - MIR SINE MIR -78 130 36 3738 100 20 60 chr1 21564856 21564924 -260628740 + LTR9B LTR ERV1 2 71 -573 1211 67 0 6 chr1 21564924 21564936 -260628728 - L1PA4 LINE L1 -1 6154 6143 204 67 0 0 chr1 21564936 21564966 -260628698 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1211 67 0 6 chr1 21564966 21565118 -260628546 - L1PA4 LINE L1 -12 6143 5991 3738 100 20 60 chr1 21565118 21565637 -260628027 + LTR9B LTR ERV1 71 566 -78 2185 110 3 0 chr1 21565640 21565982 -260627682 + AluY SINE Alu 1 343 0 386 191 45 22 chr1 21565982 21566071 -260627593 + LTR9B LTR ERV1 554 644 0 249 282 0 14 chr1 21566184 21566255 -260627409 - MLT1K LTR MaLR 0 588 519 245 19 19 75 chr1 21566285 21566338 -260627326 + (CCCCCA)n Simple_repeat Simple_repeat 3 52 0 355 322 44 31 chr1 21566758 21567118 -260626546 - L2 LINE L2 -1220 2094 1730 242 188 0 0 chr1 21567384 21567432 -260626232 + L2 LINE L2 3139 3186 -86 218 219 0 0 chr1 21567432 21567473 -260626191 + L2 LINE L2 3144 3184 -88 307 281 0 52 chr1 21568174 21568270 -260625394 - L2 LINE L2 0 3313 3223 386 303 162 39 chr1 21568286 21568570 -260625094 + L2 LINE L2 2860 3178 -135 1267 254 50 26 chr1 21568675 21569096 -260624568 - LTR16B LTR ERVL 0 464 34 1828 223 2 8 chr1 21569245 21569644 -260624020 + L1ME2 LINE L1 5510 5906 -258 324 180 49 0 chr1 21569655 21569716 -260623948 + AluSp/q SINE Alu 232 295 -8 685 232 116 17 chr1 21569718 21569799 -260623865 + L1ME2 LINE L1 5900 5972 -192 2165 176 10 3 chr1 21569799 21570186 -260623478 + MLT1B LTR MaLR 1 390 0 685 232 116 17 chr1 21570186 21570345 -260623319 + L1ME2 LINE L1 5972 6164 0 307 248 35 28 chr1 21570389 21570530 -260623134 + L1MC5 LINE L1 7793 7934 -27 2364 80 0 3 chr1 21570569 21570880 -260622784 - AluSg SINE Alu 0 310 1 386 345 74 10 chr1 21570984 21571187 -260622477 + MIR SINE MIR 3 218 -44 2036 135 0 3 chr1 21571193 21571505 -260622159 - AluSq SINE Alu -2 311 1 326 303 49 8 chr1 21571506 21571628 -260622036 - MLT1K LTR MaLR -11 577 451 214 237 0 0 chr1 21571635 21571673 -260621991 + polypyrimidine Low_complexity Low_complexity 2 39 0 747 318 42 45 chr1 21571862 21572309 -260621355 + L2 LINE L2 2868 3313 0 296 327 58 0 chr1 21572308 21572412 -260621252 + MIR SINE MIR 134 243 -19 * 535 321 43 0 chr1 21572926 21573088 -260620576 + MER115 DNA AcHobo 91 259 -434 180 0 0 0 chr1 21573236 21573256 -260620408 + (TTCCC)n Simple_repeat Simple_repeat 3 22 0 2094 100 20 3 chr1 21573470 21573769 -260619895 - AluSg SINE Alu -4 306 3 247 232 18 0 chr1 21574302 21574358 -260619306 - L1MC/D LINE L1 -2158 5650 5594 1858 149 0 7 chr1 21575546 21575847 -260617817 + 7SLRNA srpRNA srpRNA 2 300 -20 2204 101 3 0 chr1 21575850 21576156 -260617508 - AluSp SINE Alu 0 313 7 609 275 93 56 chr1 21576218 21576647 -260617017 + HAL1 LINE L1 1224 1668 -839 1706 147 10 40 chr1 21576993 21577292 -260616372 + AluJo SINE Alu 3 292 -20 849 204 250 4 chr1 21577331 21577591 -260616073 + MER5C DNA MER1_type 1 324 0 883 254 67 11 chr1 21577626 21577894 -260615770 - MER58 DNA MER1_type -58 283 1 1529 274 85 54 chr1 21577986 21578728 -260614936 - L1MC4a LINE L1 -1656 6152 5388 828 168 0 14 chr1 21579069 21579212 -260614452 + FLAM_C SINE Alu 1 141 -2 644 268 6 24 chr1 21579212 21579376 -260614288 - MER45A DNA AcHobo -17 161 1 280 257 49 9 chr1 21579632 21579780 -260613884 - MIR SINE MIR -54 208 20 664 183 0 58 chr1 21579786 21579923 -260613741 - FLAM_A SINE Alu 0 133 5 595 261 205 40 chr1 21580650 21581148 -260612516 + MLT1L LTR MaLR 21 600 -15 488 300 158 28 chr1 21581655 21582545 -260611119 + L2 LINE L2 2222 3233 -39 252 0 0 0 chr1 21583550 21583578 -260610086 + (CA)n Simple_repeat Simple_repeat 1 28 0 238 304 11 39 chr1 21583904 21584085 -260609579 + (CA)n Simple_repeat Simple_repeat 1 176 0 331 284 24 22 chr1 21585317 21585494 -260608170 + MLT1I LTR MaLR 268 398 -11 2154 165 62 33 chr1 21585552 21586006 -260607658 + MLT1C LTR MaLR 1 467 0 248 304 27 91 chr1 21586378 21586515 -260607149 - L2 LINE L2 -73 3240 3121 3602 110 52 40 chr1 21586515 21587088 -260606576 + LTR19B LTR ERV1 1 580 0 248 304 27 91 chr1 21587088 21587170 -260606494 - L2 LINE L2 -192 3121 3035 2407 83 0 0 chr1 21587292 21587593 -260606071 - AluSc SINE Alu -8 301 1 2580 183 97 26 chr1 21587677 21588284 -260605380 - L1MC4a LINE L1 -3 7805 7156 4182 123 111 63 chr1 21588285 21589601 -260604063 - pTR5 LTR ERV1 -5 2433 735 695 224 177 51 chr1 21589601 21589873 -260603791 - L1MD3 LINE L1 -658 7150 6820 1522 135 0 25 chr1 21589873 21590117 -260603547 - AluSx SINE Alu -11 301 64 695 224 177 51 chr1 21590117 21590160 -260603504 - L1MD3 LINE L1 -988 6820 6784 2290 94 0 0 chr1 21590171 21590458 -260603206 - AluY SINE Alu -24 287 1 2309 82 37 0 chr1 21590538 21590832 -260602832 - AluY SINE Alu -6 305 1 1775 196 57 44 chr1 21590833 21591338 -260602326 - L1MC4a LINE L1 -1280 6528 6017 453 149 0 0 chr1 21591338 21591405 -260602259 - MLT1E LTR MaLR 0 593 527 2434 83 3 0 chr1 21591407 21591707 -260601957 + AluSp SINE Alu 1 301 -12 673 214 152 18 chr1 21591813 21592037 -260601627 - MLT1E LTR MaLR -300 293 40 820 231 40 0 chr1 21592061 21592260 -260601404 - L1MC4a LINE L1 -1787 6021 5815 1398 274 14 0 chr1 21592340 21592687 -260600977 - L1MC4a LINE L1 -1993 5815 5464 445 316 57 53 chr1 21592721 21592864 -260600800 - L2 LINE L2 -5 3267 3121 222 118 0 0 chr1 21592864 21592898 -260600766 + (CA)n Simple_repeat Simple_repeat 1 34 0 445 316 57 53 chr1 21592898 21593036 -260600628 - L2 LINE L2 -151 3121 2985 4338 155 31 25 chr1 21593153 21593987 -260599677 - L1MC1 LINE L1 -1 6647 5809 1734 108 0 0 chr1 21593987 21594218 -260599446 + LOR1a LTR ERV1 1 231 -266 7231 103 22 13 chr1 21594218 21595266 -260598398 + MER11C LTR ERVK 1 1057 -14 1694 178 0 0 chr1 21595307 21595577 -260598087 + LOR1a LTR ERV1 228 497 0 20334 132 23 37 chr1 21595577 21595653 -260598011 - L1MC1 LINE L1 -2117 4344 4268 2157 130 0 0 chr1 21595653 21595952 -260597712 - AluSx SINE Alu -13 299 1 20334 132 23 37 chr1 21595952 21596067 -260597597 - L1MC1 LINE L1 -2193 4268 4153 1379 103 5 15 chr1 21596067 21596270 -260597394 - L1PA8 LINE L1 -1 6171 5971 20334 132 23 37 chr1 21596270 21597925 -260595739 - L1MC1 LINE L1 -2308 4153 2476 214 29 57 0 chr1 21597925 21597960 -260595704 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 20334 132 23 37 chr1 21597960 21600504 -260593160 - L1MC1 LINE L1 -3985 2476 74 8519 157 24 24 chr1 21600511 21601987 -260591677 + L1PA6 LINE L1 11 1486 -4660 3805 107 0 4 chr1 21601987 21602500 -260591164 + MER9 LTR ERVK 1 511 0 4701 68 7 5 chr1 21602500 21603091 -260590573 + HERVK9 LTR ERVK 1 592 -5324 34541 72 7 2 chr1 21603091 21607443 -260586221 + HERVK9 LTR ERVK 1268 5641 -275 2032 65 76 0 chr1 21607529 21607791 -260585873 + HERVK9 LTR ERVK 5635 5916 0 3661 118 0 4 chr1 21607795 21608304 -260585360 + MER9 LTR ERVK 5 511 0 25579 72 3 0 chr1 21608304 21611656 -260582008 + L1PA6 LINE L1 1482 4843 -1303 5575 50 1 1 chr1 21611668 21612347 -260581317 + L1PA6 LINE L1 5476 6154 0 665 107 0 0 chr1 21612352 21612436 -260581228 - L1P3 LINE L1 -6372 89 6 282 184 0 0 chr1 21612442 21612523 -260581141 - L1M LINE L1 -844 5302 5228 2524 153 18 5 chr1 21612874 21613273 -260580391 - MER66B LTR ERV1 0 486 83 444 129 57 0 chr1 21613449 21613519 -260580145 - MER66B LTR ERV1 -412 74 1 548 308 49 31 chr1 21613519 21613805 -260579859 - LTR16B LTR ERVL -152 312 22 1356 247 12 6 chr1 21613931 21614267 -260579397 + L1ME2 LINE L1 5505 5842 -322 291 287 119 20 chr1 21614268 21614369 -260579295 - L1ME2 LINE L1 -69 6095 5985 525 178 0 22 chr1 21614422 21614512 -260579152 - MSTC LTR MaLR -340 88 1 695 186 21 7 chr1 21614513 21614653 -260579011 - MSTC-int LTR MaLR -1 1734 1593 3406 163 25 38 chr1 21614727 21615388 -260578276 + MER54A LTR ERVL 42 901 0 1987 114 37 0 chr1 21615413 21615740 -260577924 + AluSg SINE Alu 1 337 0 1254 128 0 0 chr1 21615784 21615956 -260577708 + AluSc SINE Alu 1 172 -137 10457 167 50 32 chr1 21616074 21616272 -260577392 - L1 LINE L1 -1070 6495 6302 1489 171 17 119 chr1 21616272 21616675 -260576989 - MLT1A1 LTR MaLR 0 365 4 6913 233 33 38 chr1 21616679 21618422 -260575242 - MLT1A1-int LTR MaLR -1 1734 1 1667 183 5 92 chr1 21618422 21618822 -260574842 - MLT1A1 LTR MaLR 0 365 1 10457 167 50 32 chr1 21618822 21620898 -260572766 - L1 LINE L1 -1264 6301 4174 351 247 34 0 chr1 21620894 21620983 -260572681 - L1 LINE L1 -3630 3935 3844 * 402 109 0 0 chr1 21620987 21621042 -260572622 - Tigger2 DNA MER2_type -81 2637 2583 964 157 6 0 chr1 21621044 21621203 -260572461 + Tigger2 DNA MER2_type 2510 2669 -49 2640 229 60 26 chr1 21621310 21621562 -260572102 - L1 LINE L1 -4425 3140 2898 2002 136 14 0 chr1 21621562 21621848 -260571816 - AluSx SINE Alu -22 290 1 2640 229 60 26 chr1 21621848 21622425 -260571239 - L1 LINE L1 -4667 2898 2283 5924 154 37 16 chr1 21622429 21623704 -260569960 - L1MA5 LINE L1 -5 6295 5048 204 97 0 0 chr1 21623704 21623735 -260569929 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1811 171 0 4 chr1 21623741 21624016 -260569648 - AluJb SINE Alu -38 274 1 5924 154 37 16 chr1 21624016 21624254 -260569410 - L1MA5 LINE L1 -1256 5044 4762 696 231 0 0 chr1 21624267 21624397 -260569267 - FLAM_C SINE Alu -12 131 2 4711 183 29 23 chr1 21624398 21624950 -260568714 - L1MA5 LINE L1 -1372 4774 4212 2052 96 3 11 chr1 21624950 21625232 -260568432 + AluSc SINE Alu 22 301 -8 4711 183 29 23 chr1 21625232 21625715 -260567949 - L1MA5 LINE L1 -1934 4212 3733 2600 57 0 0 chr1 21626315 21626616 -260567048 + AluY SINE Alu 2 302 -9 2581 122 3 0 chr1 21626655 21627024 -260566640 - L1PB1 LINE L1 0 6867 6498 228 145 48 0 chr1 21627024 21627086 -260566578 + (TA)n Simple_repeat Simple_repeat 2 66 0 799 128 38 0 chr1 21627091 21627224 -260566440 - L1PB1 LINE L1 -350 6517 6380 10068 190 17 18 chr1 21627337 21627760 -260565904 - L1PB1 LINE L1 -727 6140 5718 1819 152 35 3 chr1 21627760 21628050 -260565614 - AluSx SINE Alu -13 299 1 10068 190 17 18 chr1 21628050 21628661 -260565003 - L1PB1 LINE L1 -1149 5718 5108 180 0 0 0 chr1 21628661 21628681 -260564983 + (TG)n Simple_repeat Simple_repeat 1 20 0 10068 190 17 18 chr1 21628681 21629601 -260564063 - L1PB1 LINE L1 -1759 5108 4188 6249 96 12 5 chr1 21629601 21629660 -260564004 - L1PB1 LINE L1 -1 6150 6093 2512 79 0 0 chr1 21629660 21629963 -260563701 - AluY SINE Alu -8 303 1 6249 96 12 5 chr1 21629963 21631241 -260562423 - L1PB1 LINE L1 -58 6093 4823 10068 190 17 18 chr1 21631241 21632385 -260561279 - L1PB1 LINE L1 -2679 4188 3061 1359 175 18 4 chr1 21632396 21632734 -260560930 - LTR46 LTR ERV1 -67 393 5 2376 123 6 6 chr1 21632734 21633084 -260560580 - LTR46-int LTR ERV1 0 6985 6636 2849 148 124 8 chr1 21633084 21633606 -260560058 - LTR1 LTR ERV1 0 785 203 1205 123 106 13 chr1 21633702 21633938 -260559726 - LTR1 LTR ERV1 -527 258 1 2872 142 40 36 chr1 21633941 21634295 -260559369 - LTR46-int LTR ERV1 -300 6685 6327 4993 166 17 35 chr1 21634295 21635282 -260558382 - LTR5 LTR ERVK 0 969 1 2872 142 40 36 chr1 21635282 21635454 -260558210 - LTR46-int LTR ERV1 -658 6327 6157 * 24559 104 12 20 chr1 21635442 21639038 -260554626 - LTR46-int LTR ERV1 -1052 5933 2366 1237 140 58 2 chr1 21639035 21639369 -260554295 - LTR46-int LTR ERV1 -6532 453 1 * 1641 163 21 25 chr1 21639370 21639779 -260553885 - LTR46 LTR ERV1 0 460 1 17397 116 36 9 chr1 21639779 21640917 -260552747 - L1PB1 LINE L1 -3797 3065 1960 2206 110 7 10 chr1 21640917 21641227 -260552437 - AluSp SINE Alu -4 309 1 17397 116 36 9 chr1 21641227 21642791 -260550873 - L1PB1 LINE L1 -4902 1960 288 1600 164 46 0 chr1 21642791 21643054 -260550610 + AluJo SINE Alu 23 297 -15 2090 195 43 12 chr1 21643059 21643475 -260550189 - L1M2a LINE L1 -5378 1729 1301 180 0 0 0 chr1 21643931 21643951 -260549713 + (GA)n Simple_repeat Simple_repeat 1 20 0 241 114 0 23 chr1 21644361 21644405 -260549259 - L1M2a LINE L1 -6844 186 144 733 196 43 0 chr1 21644465 21644603 -260549061 - L1M2a LINE L1 -6885 145 2 633 197 143 68 chr1 21644604 21644838 -260548826 - L1MC3 LINE L1 -903 6882 6599 294 50 0 0 chr1 21644838 21644878 -260548786 + (CA)n Simple_repeat Simple_repeat 2 41 0 633 197 143 68 chr1 21644878 21644928 -260548736 - L1MC3 LINE L1 -1186 6599 6554 669 91 10 20 chr1 21644945 21645044 -260548620 + MER4A LTR ERV1 1 98 -566 1975 142 168 20 chr1 21645044 21645396 -260548268 + MER4A LTR ERV1 261 664 0 874 106 183 0 chr1 21645399 21645541 -260548123 + MER4A-int LTR ERV1 1 168 -6430 1058 103 26 6 chr1 21645541 21645697 -260547967 - LTR7 LTR ERV1 0 450 292 5188 139 5 7 chr1 21645707 21646674 -260546990 - HERVH LTR ERV1 -2297 4232 3806 * 17151 137 4 33 chr1 21646668 21650043 -260543621 - HERVH LTR ERV1 -4126 3587 1 538 114 0 25 chr1 21650066 21650145 -260543519 + LTR7 LTR ERV1 374 450 0 1828 133 8 102 chr1 21650145 21650668 -260542996 + LTR7-int LTR ERV1 164 836 -5762 1272 231 49 18 chr1 21650724 21651053 -260542611 + LTR7-int LTR ERV1 1861 3043 -4170 6117 91 65 31 chr1 21651073 21651979 -260541685 + MER4A-int LTR ERV1 194 1068 -5530 312 27 0 0 chr1 21651979 21652016 -260541648 + (TG)n Simple_repeat Simple_repeat 2 38 0 6117 91 65 31 chr1 21652016 21652766 -260540898 + MER4A-int LTR ERV1 1068 2495 -4103 1352 162 70 4 chr1 21652766 21653007 -260540657 - LTR8 LTR ERV1 -434 257 1 4482 121 75 26 chr1 21653007 21653703 -260539961 + MER4A-int LTR ERV1 2737 3488 -3110 2474 101 36 20 chr1 21653703 21654061 -260539603 + THE1B LTR MaLR 1 364 0 4482 121 75 26 chr1 21654061 21654263 -260539401 + MER4A-int LTR ERV1 3488 3679 -2919 15938 88 71 51 chr1 21654267 21656372 -260537292 + MER4A-int LTR ERV1 3840 6087 -511 627 13 0 0 chr1 21656372 21656448 -260537216 + AluY SINE Alu 227 302 -8 15938 88 71 51 chr1 21656448 21656969 -260536695 + MER4A-int LTR ERV1 6087 6596 -2 642 101 10 20 chr1 21656976 21657075 -260536589 + MER4A LTR ERV1 1 98 -566 1683 137 161 75 chr1 21657075 21657447 -260536217 + MER4A LTR ERV1 261 664 0 1299 230 51 70 chr1 21657447 21657978 -260535686 - L1MC4a LINE L1 -1268 6540 6020 723 195 27 0 chr1 21658006 21658155 -260535509 - L1MC2 LINE L1 -139 6205 6053 307 147 0 189 chr1 21658173 21658268 -260535396 - MLT1E LTR MaLR -1 592 516 773 278 94 8 chr1 21658354 21658588 -260535076 - MLT1E LTR MaLR -300 293 40 567 289 15 5 chr1 21658619 21658816 -260534848 - L1MC2 LINE L1 -1798 6010 5812 1393 255 37 0 chr1 21658889 21659238 -260534426 - L1MC2 LINE L1 -1983 5825 5464 405 327 79 35 chr1 21659308 21659475 -260534189 - L2 LINE L2 -5 3308 3150 2018 287 26 10 chr1 21659475 21660092 -260533572 + MLT2E LTR ERVL 1 627 -1 405 327 79 35 chr1 21660092 21660242 -260533422 - L2 LINE L2 -163 3150 2977 564 222 30 0 chr1 21660350 21660485 -260533179 - L1MC1 LINE L1 -1 6332 6194 678 184 0 0 chr1 21660486 21660595 -260533069 - L1PA13 LINE L1 -6678 109 1 4071 241 8 2 chr1 21660630 21661650 -260532014 - L1MC2 LINE L1 -2158 3988 2963 579 162 9 0 chr1 21661663 21661774 -260531890 - L1MC2 LINE L1 -3789 2357 2246 2268 88 0 0 chr1 21661775 21662047 -260531617 - AluSx SINE Alu -36 276 5 3376 206 12 4 chr1 21662049 21662813 -260530851 - L1MEc LINE L1 -3166 2980 2242 1451 141 0 0 chr1 21663144 21663343 -260530321 + AluSx SINE Alu 1 199 -113 303 80 40 0 chr1 21663343 21663393 -260530271 + AluSx SINE Alu 249 300 0 1618 182 37 3 chr1 21663403 21663699 -260529965 + AluJo SINE Alu 1 306 -6 271 315 9 18 chr1 21664139 21664250 -260529414 + LTR67 LTR ERVL 354 463 -94 2437 103 3 0 chr1 21664494 21664805 -260528859 - AluSx SINE Alu 0 312 1 2139 100 62 0 chr1 21664978 21665269 -260528395 - AluSp SINE Alu -4 309 1 2065 147 3 7 chr1 21665557 21665863 -260527801 + AluJb SINE Alu 3 307 -5 1371 156 8 9 chr1 21666120 21666498 -260527166 + MSTA LTR MaLR 1 428 0 756 152 0 0 chr1 21666765 21666877 -260526787 + AluJb SINE Alu 2 113 -199 180 0 0 0 chr1 21666886 21666906 -260526758 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 916 178 19 0 chr1 21667302 21667459 -260526205 + FRAM SINE Alu 1 160 -6 2248 132 0 3 chr1 21668544 21668854 -260524810 + AluSx SINE Alu 1 309 -3 913 163 0 0 chr1 21668864 21669005 -260524659 + FLAM_C SINE Alu 1 141 -2 388 289 145 13 chr1 21669067 21669226 -260524438 + MER5A DNA MER1_type 10 189 0 3783 148 53 34 chr1 21669357 21670112 -260523552 - L1MC2 LINE L1 0 6344 5576 759 176 0 8 chr1 21670114 21670239 -260523425 + FAM SINE Alu 1 124 -61 1899 162 53 0 chr1 21670249 21670675 -260522989 - L1MC2 LINE L1 -743 5403 5133 748 253 0 6 chr1 21670677 21670835 -260522829 - MER63 DNA MER1_type -279 783 1 1532 211 4 0 chr1 21670977 21671257 -260522407 + AluJo SINE Alu 1 281 -31 1629 173 14 27 chr1 21671257 21671551 -260522113 - AluJb SINE Alu -20 292 2 404 265 28 115 chr1 21671574 21671658 -260522006 + L1ME LINE L1 4672 4762 -1384 2151 125 3 3 chr1 21671658 21671955 -260521709 + AluSx SINE Alu 1 297 -15 404 265 28 115 chr1 21671955 21672089 -260521575 + L1ME LINE L1 4762 4906 -1240 2258 108 3 0 chr1 21672089 21672394 -260521270 + AluSq SINE Alu 1 306 -7 404 265 28 115 chr1 21672394 21672600 -260521064 + L1ME LINE L1 4906 5060 -1086 2372 84 7 0 chr1 21672704 21673003 -260520661 - AluSp SINE Alu -12 301 1 423 293 125 32 chr1 21673226 21673511 -260520153 + L1ME LINE L1 5319 5630 -532 * 849 216 22 120 chr1 21673494 21673645 -260520019 + L1MC4 LINE L1 7446 7610 -432 1680 134 58 11 chr1 21673645 21673906 -260519758 + AluJb SINE Alu 3 275 -37 495 0 0 0 chr1 21673916 21673971 -260519693 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 849 216 22 120 chr1 21673971 21674165 -260519499 + L1MC4 LINE L1 7619 7767 -275 203 167 0 21 chr1 21675226 21675274 -260518390 + CT-rich Low_complexity Low_complexity 4 50 0 428 360 18 13 chr1 21675278 21675503 -260518161 + MIR SINE MIR 1 226 -36 248 221 173 48 chr1 21675534 21675638 -260518026 - L2 LINE L2 -7 3265 3149 306 276 31 31 chr1 21675670 21675768 -260517896 - L2 LINE L2 -36 3236 3139 1232 198 23 123 chr1 21675918 21676078 -260517586 + L2 LINE L2 2912 3086 -227 2025 135 10 3 chr1 21676078 21676375 -260517289 + AluSx SINE Alu 1 299 -13 1232 198 23 123 chr1 21676375 21676654 -260517010 + L2 LINE L2 3086 3307 -6 234 128 0 0 chr1 21676732 21676771 -260516893 + (GA)n Simple_repeat Simple_repeat 2 40 0 508 271 169 58 chr1 21677806 21677853 -260515811 - L2 LINE L2 0 3313 3273 2069 100 50 0 chr1 21677853 21678134 -260515530 + AluSx SINE Alu 1 295 -17 508 271 169 58 chr1 21678134 21678429 -260515235 - L2 LINE L2 -40 3273 2933 521 289 19 24 chr1 21678916 21679124 -260514540 - L3 LINE CR1 -125 1452 1246 615 238 122 9 chr1 21679654 21679868 -260513796 - MIR SINE MIR 0 262 25 402 284 87 0 chr1 21679965 21680092 -260513572 - Charlie8 DNA MER1_type -2154 263 126 2260 103 13 10 chr1 21680112 21680423 -260513241 - AluSx SINE Alu 0 312 1 284 358 18 9 chr1 21680603 21680712 -260512952 - L3 LINE CR1 -1048 529 420 451 288 101 41 chr1 21680736 21680955 -260512709 + MIR SINE MIR 17 248 -14 363 295 49 0 chr1 21681335 21681457 -260512207 - L2 LINE L2 -1 3312 3185 218 105 26 0 chr1 21681601 21681639 -260512025 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 419 221 159 0 chr1 21681709 21681822 -260511842 - L2 LINE L2 -3 3269 3139 473 313 25 10 chr1 21681848 21682046 -260511618 - MIR SINE MIR -13 249 49 218 352 125 5 chr1 21682184 21682400 -260511264 - L2 LINE L2 -1090 2224 1983 343 304 117 18 chr1 21682734 21682905 -260510759 + L2 LINE L2 3116 3303 -10 2002 122 3 26 chr1 21683077 21683388 -260510276 + AluJb SINE Alu 1 304 -8 226 297 33 25 chr1 21683517 21683713 -260509951 - MIR SINE MIR -13 249 5 632 206 0 28 chr1 21683747 21683888 -260509776 - AluJb SINE Alu 0 312 176 354 256 90 21 chr1 21683939 21684096 -260509568 - MIR SINE MIR -63 145 20 1841 154 7 0 chr1 21684576 21684855 -260508809 + AluSx SINE Alu 25 305 -7 1197 238 80 3 chr1 21685609 21685945 -260507719 - MER74B LTR ERVL -26 596 235 3776 140 52 25 chr1 21685968 21686039 -260507625 - MER50 LTR ERV1 -20 714 646 2005 97 34 4 chr1 21686039 21686306 -260507358 + AluSc SINE Alu 16 290 -19 3776 140 52 25 chr1 21686306 21686929 -260506735 - MER50 LTR ERV1 -88 646 1 558 212 55 27 chr1 21686929 21687075 -260506589 - MER74B LTR ERVL -414 208 59 290 170 0 0 chr1 21687144 21687197 -260506467 + MIR SINE MIR 90 142 -66 458 308 21 1 chr1 21688004 21688149 -260505515 + MIR SINE MIR 36 181 -63 427 229 114 65 chr1 21688153 21688415 -260505249 - ORSL DNA AcHobo 0 275 1 191 361 115 0 chr1 21688451 21688573 -260505091 - L2 LINE L2 -22 3250 3115 324 287 62 16 chr1 21689171 21689300 -260504364 + MIR3 SINE MIR 2 136 -72 422 286 8 8 chr1 21689701 21689820 -260503844 + MIR3 SINE MIR 78 196 -12 539 328 51 20 chr1 21689926 21690179 -260503485 - MIR SINE MIR 0 262 2 276 364 39 0 chr1 21690509 21690638 -260503026 - MIR SINE MIR -45 217 84 1352 261 161 16 chr1 21690648 21691158 -260502506 - MLT1G1 LTR MaLR -1 594 11 1185 189 41 5 chr1 21691164 21691420 -260502244 + L1MC3 LINE L1 6376 6669 -1174 306 188 165 0 chr1 21691421 21691506 -260502158 + L1MC3 LINE L1 7655 7753 -32 574 131 131 0 chr1 21691540 21691639 -260502025 + MER2 DNA MER2_type 1 112 -233 1081 56 0 0 chr1 21691653 21691778 -260501886 - AluY SINE Alu -19 292 168 1422 170 30 108 chr1 21691794 21692164 -260501500 + L1MC3 LINE L1 6616 6956 -829 1462 129 60 143 chr1 21692167 21692328 -260501336 + L1MC3 LINE L1 7355 7528 -257 2363 91 3 10 chr1 21692328 21692626 -260501038 + AluSp SINE Alu 1 296 -17 1462 129 60 143 chr1 21692626 21692899 -260500765 + L1MC3 LINE L1 7528 7753 -32 1236 184 48 52 chr1 21692945 21693055 -260500609 + MER2 DNA MER2_type 25 134 -211 1898 144 13 17 chr1 21693055 21693353 -260500311 - AluJb SINE Alu -15 297 1 1236 184 48 52 chr1 21693353 21693552 -260500112 + MER2 DNA MER2_type 134 333 -12 1091 247 20 0 chr1 21693600 21693851 -260499813 - MLT1J2 LTR MaLR -156 294 39 199 298 0 0 chr1 21694587 21694634 -260499030 + L2 LINE L2 3139 3185 -87 275 312 24 32 chr1 21695647 21695772 -260497892 + MIR SINE MIR 6 129 -133 376 323 102 12 chr1 21696572 21696739 -260496925 - MIR SINE MIR -24 184 2 512 168 10 0 chr1 21697402 21697503 -260496161 + CT-rich Low_complexity Low_complexity 1 102 0 1851 152 39 0 chr1 21697503 21697786 -260495878 - AluSq SINE Alu -19 294 1 304 358 54 0 chr1 21697826 21697974 -260495690 - MIR SINE MIR -86 176 21 1504 162 16 8 chr1 21697982 21698229 -260495435 - AluJo SINE Alu -19 293 45 1448 252 106 59 chr1 21698334 21698957 -260494707 + MLT2F LTR ERVL 1 652 -11 266 309 86 12 chr1 21698973 21699135 -260494529 + ERVL-F LTR ERVL 4 177 -5587 637 238 0 0 chr1 21699299 21699421 -260494243 + FLAM_C SINE Alu 2 123 -20 4225 247 91 35 chr1 21699458 21700729 -260492935 + ERVL LTR ERVL 2417 3759 -2005 424 191 204 0 chr1 21700872 21701008 -260492656 + Ricksha DNA DNA 184 351 -903 1441 298 85 34 chr1 21701008 21701633 -260492031 + MLT2F LTR ERVL 7 663 0 296 176 73 0 chr1 21701646 21701714 -260491950 + L2 LINE L2 3200 3272 0 194 265 20 0 chr1 21701739 21701788 -260491876 - L2 LINE L2 -86 3186 3137 298 350 113 0 chr1 21702630 21702824 -260490840 - MIR SINE MIR 0 262 47 250 233 33 0 chr1 21702879 21702939 -260490725 + L2 LINE L2 3194 3255 -17 2369 97 0 0 chr1 21703341 21703630 -260490034 + AluY SINE Alu 1 289 -22 213 311 98 16 chr1 21703642 21703764 -260489900 + MIR3 SINE MIR 7 138 -70 326 206 27 0 chr1 21703776 21703849 -260489815 - MER112 DNA MER1_type -1 259 185 2093 164 0 0 chr1 21704183 21704495 -260489169 + AluSx SINE Alu 1 312 0 528 380 32 5 chr1 21704679 21704900 -260488764 + MIR SINE MIR 24 250 -12 2043 155 0 0 chr1 21705583 21705873 -260487791 + AluJo SINE Alu 9 298 -14 190 302 0 16 chr1 21706189 21706252 -260487412 - MER5A DNA MER1_type -87 102 41 1602 194 6 38 chr1 21706591 21706905 -260486759 + AluJb SINE Alu 1 304 -8 313 287 20 10 chr1 21707597 21707698 -260485966 - MIR SINE MIR -63 145 44 242 219 57 29 chr1 21707859 21707964 -260485700 + LTR48 LTR ERV1 629 736 -51 1170 155 0 11 chr1 21707983 21708170 -260485494 + AluJb SINE Alu 122 306 -6 416 196 11 0 chr1 21708457 21708549 -260485115 - MER113 DNA MER1_type? -302 219 127 2179 129 0 13 chr1 21708569 21708900 -260484764 + AluSx SINE Alu 1 312 0 193 220 51 51 chr1 21709205 21709264 -260484400 + MER5A DNA MER1_type 7 65 -124 3224 118 39 32 chr1 21709296 21709496 -260484168 - MER4B LTR ERV1 -36 574 377 4220 78 0 0 chr1 21709496 21710050 -260483614 + MER41A LTR ERV1 1 554 0 3224 118 39 32 chr1 21710050 21710419 -260483245 - MER4B LTR ERV1 -233 377 1 370 267 8 38 chr1 21710419 21710550 -260483114 + MER5A DNA MER1_type 63 189 0 2753 177 75 9 chr1 21710569 21711117 -260482547 + LTR26E LTR ERV1 39 622 0 1826 99 34 0 chr1 21711242 21711475 -260482189 - AluSx SINE Alu -37 275 35 195 276 61 41 chr1 21711477 21711575 -260482089 + MIR SINE MIR 65 164 -98 254 240 58 58 chr1 21712156 21712212 -260481452 - MIR SINE MIR -100 162 104 4045 83 5 2 chr1 21712212 21712764 -260480900 + MER41A LTR ERV1 1 554 0 254 240 58 58 chr1 21712764 21712811 -260480853 - MIR SINE MIR -157 105 59 189 0 0 0 chr1 21712841 21712862 -260480802 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 202 409 22 11 chr1 21713003 21713184 -260480480 - L2 LINE L2 -179 3134 2952 27 0 0 0 chr1 21713303 21713330 -260480334 + AT_rich Low_complexity Low_complexity 1 27 0 391 234 170 21 chr1 21713830 21713971 -260479693 + MIR SINE MIR 22 183 -79 258 293 28 28 chr1 21714296 21714402 -260479262 - L2 LINE L2 0 3313 3208 2357 58 25 0 chr1 21714641 21714952 -260478712 + AluY SINE Alu 1 318 0 454 302 93 9 chr1 21715033 21715258 -260478406 + MLT1L LTR MaLR 372 615 0 1824 151 42 0 chr1 21715740 21716025 -260477639 + AluJb SINE Alu 7 303 -9 295 47 93 0 chr1 21716029 21716072 -260477592 - FLAM SINE Alu -6 127 81 2139 116 3 0 chr1 21716173 21716519 -260477145 - AluSq SINE Alu 0 347 1 592 165 71 8 chr1 21716519 21716646 -260477018 - L1MC1 LINE L1 -8 6325 6191 955 299 34 36 chr1 21716873 21717317 -260476347 - LTR16A1 LTR ERVL -14 443 1 218 250 170 18 chr1 21717346 21717458 -260476206 - L2 LINE L2 -7 3265 3137 234 413 8 0 chr1 21717746 21717872 -260475792 - L2 LINE L2 -5 3267 3141 194 244 0 0 chr1 21718705 21718746 -260474918 - L2 LINE L2 0 3313 3273 396 250 145 0 chr1 21718991 21719115 -260474549 + MIR SINE MIR 121 262 0 238 253 172 0 chr1 21719228 21719327 -260474337 + MIR SINE MIR 35 150 -112 323 278 205 7 chr1 21719408 21719559 -260474105 - MIR SINE MIR -26 236 56 793 224 50 18 chr1 21720002 21720221 -260473443 - MIR SINE MIR -1 261 36 182 269 0 0 chr1 21720233 21720285 -260473379 + MIR SINE MIR 156 207 -55 200 208 338 0 chr1 21720409 21720486 -260473178 + L2 LINE L2 3191 3293 -20 356 183 0 0 chr1 21720872 21720943 -260472721 + AluJb SINE Alu 1 51 -250 * 375 172 0 0 chr1 21720929 21720987 -260472677 - AluS SINE Alu -15 285 228 1424 161 85 0 chr1 21720988 21721224 -260472440 + AluJb SINE Alu 38 293 -19 651 168 112 6 chr1 21721310 21721484 -260472180 - L1MD3 LINE L1 -4 7991 7588 236 289 44 33 chr1 21721493 21721583 -260472081 - MIR SINE MIR -151 111 21 383 320 105 7 chr1 21722842 21722995 -260470669 - MIR SINE MIR -48 214 47 185 0 0 39 chr1 21723919 21723945 -260469719 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1636 162 56 0 chr1 21723952 21724274 -260469390 - AluJo SINE Alu 0 342 6 488 288 72 97 chr1 21724294 21724595 -260469069 - L1ME4a LINE L1 -5 6116 5836 2178 111 3 0 chr1 21724595 21724884 -260468780 + AluSg1 SINE Alu 1 290 -19 488 288 72 97 chr1 21724884 21725169 -260468495 - L1ME4a LINE L1 -285 5836 5545 577 326 32 0 chr1 21725880 21726067 -260467597 + MIR SINE MIR 32 224 -38 559 277 64 56 chr1 21726098 21726347 -260467317 + MIR SINE MIR 6 256 -6 189 74 0 0 chr1 21726372 21726399 -260467265 + (CAT)n Simple_repeat Simple_repeat 3 29 0 438 222 34 118 chr1 21726420 21726590 -260467074 - L1MEc LINE L1 -5278 1118 935 2043 139 7 0 chr1 21726590 21726877 -260466787 - AluSx SINE Alu -23 289 1 438 222 34 118 chr1 21726877 21726907 -260466757 - L1MEc LINE L1 -5461 935 904 1517 163 20 67 chr1 21726907 21726989 -260466675 + MER44D DNA MER2_type 1 85 -2406 2021 128 18 0 chr1 21726989 21727290 -260466374 - AluSc SINE Alu 0 306 1 1517 163 20 67 chr1 21727290 21727562 -260466102 + MER44D DNA MER2_type 85 609 0 438 222 34 118 chr1 21727562 21727657 -260466007 - L1MEc LINE L1 -5492 904 847 306 224 0 0 chr1 21727633 21727700 -260465964 - L1ME LINE L1 -454 5736 5670 * 1817 141 0 85 chr1 21727703 21727846 -260465818 + AluJb SINE Alu 1 104 -208 2160 146 0 0 chr1 21727846 21728154 -260465510 + AluJb SINE Alu 1 308 -4 1817 141 0 85 chr1 21728154 21728329 -260465335 + AluJb SINE Alu 104 292 -20 609 280 98 0 chr1 21728638 21728831 -260464833 - MIR SINE MIR -3 259 48 190 271 62 0 chr1 21728890 21728938 -260464726 - MIR SINE MIR -84 178 128 1199 262 64 20 chr1 21729370 21729778 -260463886 + L1ME3A LINE L1 5727 6152 -18 1787 148 11 0 chr1 21729841 21730111 -260463553 + AluJo SINE Alu 21 293 -19 377 259 162 4 chr1 21730202 21730398 -260463266 + MIR SINE MIR 19 247 -15 336 331 0 44 chr1 21730744 21730880 -260462784 + MIR SINE MIR 118 247 -15 239 275 17 67 chr1 21730968 21731088 -260462576 - L2 LINE L2 -5 3267 3154 945 158 30 0 chr1 21731909 21732074 -260461590 - L1MB3 LINE L1 -215 5968 5799 2320 87 0 6 chr1 21732100 21732411 -260461253 + AluSc SINE Alu 1 309 0 293 163 68 95 chr1 21732424 21732542 -260461122 - L1MB7 LINE L1 -10 6174 6059 2009 148 0 0 chr1 21732542 21732846 -260460818 - AluJb SINE Alu -8 304 1 293 163 68 95 chr1 21732846 21732874 -260460790 - L1MB7 LINE L1 -125 6059 6032 2459 130 3 8 chr1 21732991 21733368 -260460296 + MLT1B LTR MaLR 16 390 0 223 179 0 0 chr1 21733609 21733648 -260460016 + MIR SINE MIR 116 154 -108 239 119 34 17 chr1 21733765 21733824 -260459840 - L1MB7 LINE L1 -77 6107 6048 2755 191 37 36 chr1 21733958 21734723 -260458941 - L1ME1 LINE L1 -189 5977 5214 1855 147 0 29 chr1 21734723 21735035 -260458629 - AluSx SINE Alu -9 303 1 2755 191 37 36 chr1 21735035 21735076 -260458588 - L1ME1 LINE L1 -952 5214 5175 2340 92 0 0 chr1 21735076 21735379 -260458285 - AluSq SINE Alu -10 303 1 2755 191 37 36 chr1 21735379 21735553 -260458111 - L1ME1 LINE L1 -991 5175 4992 2181 150 35 3 chr1 21735561 21735934 -260457730 - L1MB3 LINE L1 0 6183 5799 948 118 0 15 chr1 21735960 21736095 -260457569 + FLAM_C SINE Alu 1 133 0 1509 184 28 83 chr1 21736097 21736520 -260457144 - L1MB7 LINE L1 -10 6174 5775 2516 90 22 30 chr1 21736538 21736905 -260456759 - THE1B LTR MaLR 0 364 1 2288 172 20 3 chr1 21736905 21737510 -260456154 - L1MB7 LINE L1 -524 5650 5032 2032 138 0 3 chr1 21737511 21737816 -260455848 - AluSx SINE Alu -2 310 7 1219 154 0 47 chr1 21737828 21738088 -260455576 - AluJo SINE Alu 0 312 84 937 160 47 0 chr1 21738088 21738257 -260455407 - L1MB7 LINE L1 -1107 5039 4863 561 197 13 7 chr1 21738369 21738521 -260455143 + CT-rich Low_complexity Low_complexity 2 154 0 5210 227 41 33 chr1 21738524 21738706 -260454958 - L1ME1 LINE L1 -1212 4934 4755 1675 159 51 0 chr1 21738706 21738864 -260454800 - AluJo SINE Alu -22 290 111 189 0 0 0 chr1 21738864 21738885 -260454779 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1675 159 51 0 chr1 21738885 21739002 -260454662 - AluJo SINE Alu -201 111 1 5210 227 41 33 chr1 21739002 21739734 -260453930 - L1ME1 LINE L1 -1391 4755 4031 2233 98 7 0 chr1 21739734 21740039 -260453625 - AluSx SINE Alu -5 307 1 5210 227 41 33 chr1 21740039 21740485 -260453179 - L1ME1 LINE L1 -2115 4031 3556 2056 168 22 59 chr1 21740485 21740890 -260452774 + MLT1B LTR MaLR 1 390 0 5210 227 41 33 chr1 21740890 21741079 -260452585 - L1ME1 LINE L1 -2590 3556 3370 300 304 242 16 chr1 21741253 21741447 -260452217 - L1ME LINE L1 -266 5855 5618 760 167 0 8 chr1 21742419 21742545 -260451119 - FLAM_C SINE Alu -12 131 7 186 348 33 0 chr1 21742659 21742751 -260450913 - MIR SINE MIR -110 152 58 1527 206 45 47 chr1 21742957 21743359 -260450305 + MER31A LTR ERV1 85 485 0 180 287 31 101 chr1 21743911 21744040 -260449624 - MIR3 SINE MIR -41 167 48 409 232 17 57 chr1 21745542 21745719 -260447945 + (TG)n Simple_repeat Simple_repeat 2 171 0 191 111 0 22 chr1 21745742 21745787 -260447877 + (TG)n Simple_repeat Simple_repeat 2 45 0 234 222 0 0 chr1 21746133 21746178 -260447486 - MIR SINE MIR -109 153 109 337 237 54 0 chr1 21746542 21746635 -260447029 + MIR SINE MIR 45 142 -66 631 343 29 8 chr1 21747209 21747448 -260446216 + MIR SINE MIR 4 247 -15 201 328 80 24 chr1 21748208 21748333 -260445331 + L2 LINE L2 3180 3311 -2 389 256 90 15 chr1 21748640 21748773 -260444891 + MIR3 SINE MIR 34 176 -32 424 202 31 54 chr1 21749020 21749047 -260444617 + MER53 DNA DNA 1 27 -162 2050 127 0 10 chr1 21749047 21749361 -260444303 + AluSx SINE Alu 1 311 -1 424 202 31 54 chr1 21749361 21749462 -260444202 + MER53 DNA DNA 27 126 -63 23 0 0 0 chr1 21749473 21749496 -260444168 + AT_rich Low_complexity Low_complexity 1 23 0 243 146 31 167 chr1 21749503 21749537 -260444127 + MER53 DNA DNA 95 132 -57 2168 108 0 0 chr1 21749537 21749832 -260443832 - AluSc SINE Alu -14 295 1 243 146 31 167 chr1 21749832 21749857 -260443807 + MER53 DNA DNA 132 159 -30 252 0 0 0 chr1 21749857 21749885 -260443779 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 1620 150 25 4 chr1 21749885 21750159 -260443505 - AluJo SINE Alu -32 280 1 243 146 31 167 chr1 21750159 21750193 -260443471 + MER53 DNA DNA 157 177 -12 228 289 41 21 chr1 21750329 21750409 -260443255 - MER5A DNA MER1_type -83 106 25 395 266 58 53 chr1 21750409 21750597 -260443067 + MIR3 SINE MIR 4 192 -16 837 194 11 33 chr1 21751379 21751559 -260442105 + MER5A DNA MER1_type 5 180 -9 2353 80 0 3 chr1 21751699 21752001 -260441663 - AluSq SINE Alu -11 302 2 254 288 14 0 chr1 21752109 21752182 -260441482 + MIR3 SINE MIR 83 156 -52 571 241 167 0 chr1 21752183 21752345 -260441319 - MER5A DNA MER1_type 0 189 1 2331 85 3 0 chr1 21754989 21755295 -260438369 - AluSq SINE Alu -6 307 1 2630 39 0 0 chr1 21755742 21756053 -260437611 - AluY SINE Alu 0 311 1 518 274 34 34 chr1 21756946 21757154 -260436510 + MIR SINE MIR 20 227 -35 223 170 0 21 chr1 21757347 21757394 -260436270 + G-rich Low_complexity Low_complexity 6 51 0 22 0 0 0 chr1 21757686 21757708 -260435956 + AT_rich Low_complexity Low_complexity 1 22 0 2211 75 0 41 chr1 21757717 21758036 -260435628 + AluY SINE Alu 1 306 -5 232 258 32 0 chr1 21758147 21758209 -260435455 - MIR SINE MIR -41 221 158 356 273 8 61 chr1 21758209 21758341 -260435323 + LTR2 LTR ERV1 1 125 -324 874 217 0 5 chr1 21758389 21758573 -260435091 + LTR2 LTR ERV1 266 448 -1 14000 179 20 14 chr1 21758574 21761069 -260432595 + HERVE LTR ERV1 1 2512 -5301 21115 137 2 10 chr1 21761069 21764234 -260429430 + HERVE LTR ERV1 2686 5822 -1991 563 176 0 0 chr1 21764264 21764355 -260429309 + HERVE LTR ERV1 5915 6005 -1808 278 190 52 0 chr1 21764358 21764416 -260429248 + Harlequin LTR ERV1 5468 5528 -1368 * 448 104 0 0 chr1 21764414 21764481 -260429183 + Harlequin LTR ERV1 6829 6895 -1 424 266 18 71 chr1 21764481 21764650 -260429014 + LTR2 LTR ERV1 1 160 -289 * 772 166 0 152 chr1 21764646 21764863 -260428801 + LTR2 LTR ERV1 266 449 0 326 274 171 8 chr1 21764863 21764980 -260428684 - MIR SINE MIR -100 162 27 309 304 63 38 chr1 21765015 21765173 -260428491 + MIR3 SINE MIR 2 163 -45 255 256 50 33 chr1 21765145 21765266 -260428398 - L2 LINE L2 -190 3123 3001 * 385 242 95 33 chr1 21765287 21765498 -260428166 - L2 LINE L2 -559 2755 2532 298 257 169 7 chr1 21765556 21765704 -260427960 - L2 LINE L2 -766 2548 2377 234 332 49 58 chr1 21765732 21765955 -260427709 + L2 LINE L2 2951 3171 -101 2019 125 0 0 chr1 21766205 21766492 -260427172 + AluSx SINE Alu 1 287 -25 378 237 0 21 chr1 21767002 21767095 -260426569 + L2 LINE L2 3221 3311 -2 2049 244 62 2 chr1 21767268 21767765 -260425899 - MLT1H LTR MaLR -7 542 16 252 327 38 44 chr1 21767898 21768057 -260425607 + L2 LINE L2 3096 3253 -60 432 260 0 0 chr1 21768544 21768690 -260424974 + (TG)n Simple_repeat Simple_repeat 2 147 0 866 325 136 20 chr1 21768863 21769793 -260423871 + L2 LINE L2 2260 3313 0 605 236 6 0 chr1 21769921 21770095 -260423569 + (TG)n Simple_repeat Simple_repeat 2 176 0 247 135 269 0 chr1 21770193 21770245 -260423419 + MIR SINE MIR 84 149 -113 243 353 6 19 chr1 21770856 21771012 -260422652 + CT-rich Low_complexity Low_complexity 6 159 0 1003 306 141 33 chr1 21771371 21772284 -260421380 + L2 LINE L2 2125 3235 -78 281 309 34 14 chr1 21772376 21772527 -260421137 + MIR SINE MIR 31 143 -65 282 270 135 0 chr1 21772529 21772640 -260421024 - L2 LINE L2 0 3272 3147 223 296 28 14 chr1 21772679 21772750 -260420914 - L2 LINE L2 -78 3194 3123 2017 133 3 7 chr1 21773423 21773732 -260419932 - AluJo SINE Alu -4 308 1 405 276 122 0 chr1 21773898 21774021 -260419643 - MIR SINE MIR -12 250 113 385 308 66 5 chr1 21774254 21774460 -260419204 + MIR SINE MIR 34 261 -1 217 300 0 0 chr1 21774444 21774494 -260419170 - MIR SINE MIR -101 161 112 * 347 289 18 9 chr1 21774567 21774681 -260418983 + MIR3 SINE MIR 91 205 -3 * 376 304 54 0 chr1 21774667 21774779 -260418885 + L2 LINE L2 3147 3264 -8 212 259 19 0 chr1 21774819 21774873 -260418791 - MIR SINE MIR -130 78 24 2632 26 0 7 chr1 21776005 21776315 -260417349 - AluY SINE Alu -3 308 1 226 280 13 40 chr1 21776602 21776677 -260416987 + L2 LINE L2 3232 3304 -9 229 175 0 0 chr1 21776780 21776820 -260416844 - L2 LINE L2 -12 3301 3262 296 314 82 48 chr1 21777256 21777279 -260416385 - MIR SINE MIR -3 259 238 1565 179 6 28 chr1 21777279 21777598 -260416066 + AluJo SINE Alu 1 312 0 296 314 82 48 chr1 21777598 21777781 -260415883 - MIR SINE MIR -24 238 46 368 318 32 8 chr1 21777783 21777909 -260415755 - L2 LINE L2 0 3272 3144 398 345 91 18 chr1 21778171 21778391 -260415273 + MIR SINE MIR 21 256 -6 767 224 79 0 chr1 21778860 21779025 -260414639 - MER45A DNA AcHobo 0 178 1 331 213 0 0 chr1 21779026 21779087 -260414577 - MER45A DNA AcHobo -117 61 1 344 312 9 0 chr1 21779911 21780020 -260413644 + L1ME LINE L1 5671 5780 -341 2281 82 0 29 chr1 21780155 21780471 -260413193 - AluSq SINE Alu -6 307 1 315 306 16 67 chr1 21780493 21780686 -260412978 + HAL1 LINE L1 2325 2507 0 193 327 0 0 chr1 21782110 21782162 -260411502 + MIR SINE MIR 102 153 -109 445 256 85 0 chr1 21782185 21782314 -260411350 - MIR SINE MIR -44 218 79 191 319 72 0 chr1 21783121 21783190 -260410474 + L2 LINE L2 3200 3273 -40 332 295 22 66 chr1 21783252 21783435 -260410229 + LTR16A LTR ERVL 121 295 -155 225 0 0 0 chr1 21783465 21783490 -260410174 + (TG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr1 21783774 21783797 -260409867 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 355 0 0 chr1 21783807 21783945 -260409719 + (TCTCTG)n Simple_repeat Simple_repeat 6 143 0 297 0 0 0 chr1 21783988 21784021 -260409643 + (TG)n Simple_repeat Simple_repeat 1 33 0 262 253 36 36 chr1 21784556 21784639 -260409025 - L2 LINE L2 -183 3089 3007 576 246 42 9 chr1 21784668 21784853 -260408811 - MIR SINE MIR -65 143 3 341 239 0 45 chr1 21785206 21785294 -260408370 + L2 LINE L2 3151 3234 -38 564 262 47 7 chr1 21785311 21785460 -260408204 - MIR SINE MIR -1 261 107 299 319 89 47 chr1 21785580 21785771 -260407893 - MIR SINE MIR -48 214 16 1996 120 0 128 chr1 21786437 21786836 -260406828 + MER7A DNA MER2_type 1 346 0 265 311 107 29 chr1 21787253 21787356 -260406308 - L2 LINE L2 -21 3251 3141 669 263 78 11 chr1 21787402 21787581 -260406083 - MIR SINE MIR -48 214 24 299 266 129 66 chr1 21787865 21788136 -260405528 - L2 LINE L2 -174 3098 2811 312 27 0 0 chr1 21788444 21788481 -260405183 + (CA)n Simple_repeat Simple_repeat 1 37 0 403 308 38 57 chr1 21788861 21789124 -260404540 - L2 LINE L2 -1763 1551 1294 1781 134 65 20 chr1 21789124 21789416 -260404248 + AluJb SINE Alu 1 305 -7 185 302 111 35 chr1 21789931 21790103 -260403561 - MIR3 SINE MIR -21 187 3 198 91 0 0 chr1 21790249 21790282 -260403382 + (CCCGA)n Simple_repeat Simple_repeat 1 33 0 424 251 18 140 chr1 21793167 21793440 -260400224 - MIR3 SINE MIR -10 252 15 939 150 0 0 chr1 21793870 21794010 -260399654 + AluSg/x SINE Alu 173 312 0 565 213 59 15 chr1 21794066 21794202 -260399462 + MIR3 SINE MIR 4 145 -63 1024 182 31 0 chr1 21794226 21794418 -260399246 + MER58 DNA MER1_type 1 198 -2222 209 250 154 44 chr1 21794506 21794642 -260399022 + L2 LINE L2 3113 3263 -50 441 227 110 19 chr1 21799604 21799758 -260393906 - L2 LINE L2 -614 2700 2533 2073 145 3 3 chr1 21800737 21801047 -260392617 - AluSx SINE Alu 0 312 3 643 266 180 61 chr1 21801111 21801286 -260392378 - L2 LINE L2 -4 3309 3156 2323 61 51 3 chr1 21801286 21801582 -260392082 + AluSg SINE Alu 1 310 0 643 266 180 61 chr1 21801582 21802116 -260391548 - L2 LINE L2 -157 3156 2534 480 245 114 72 chr1 21802293 21802767 -260390897 - L1ME4a LINE L1 -37 6084 5591 224 257 68 54 chr1 21803254 21803328 -260390336 - L2 LINE L2 -75 3197 3123 354 336 110 7 chr1 21804145 21804291 -260389373 + MER5B DNA MER1_type 18 178 0 209 278 19 0 chr1 21804291 21804344 -260389320 + MIR3 SINE MIR 148 201 -7 226 333 137 20 chr1 21804590 21804743 -260388921 + MIR SINE MIR 92 262 0 424 279 140 7 chr1 21804781 21804917 -260388747 - L2 LINE L2 -1 3271 3118 439 195 58 0 chr1 21804942 21805029 -260388635 + L2 LINE L2 3222 3313 0 211 358 55 28 chr1 21805130 21805239 -260388425 + L2 LINE L2 3132 3243 -29 331 250 190 0 chr1 21805901 21806001 -260387663 - L2 LINE L2 -1 3271 3153 197 312 96 24 chr1 21806246 21806371 -260387293 + L3 LINE CR1 1432 1565 -12 410 274 126 29 chr1 21806880 21807055 -260386609 + L2 LINE L2 3104 3295 -18 584 256 40 62 chr1 21807277 21807504 -260386160 + MIR SINE MIR 5 226 -36 458 312 64 0 chr1 21808169 21808326 -260385338 - MIR SINE MIR -48 214 48 2427 80 0 0 chr1 21809040 21809341 -260384323 + AluY SINE Alu 1 301 -10 389 325 143 28 chr1 21809434 21810012 -260383652 - L2 LINE L2 -7 3265 2620 194 250 25 0 chr1 21810383 21810423 -260383241 - L2 LINE L2 -11 3261 3221 760 188 0 15 chr1 21810443 21810603 -260383061 - FLAM_A SINE Alu 0 133 1 1011 178 0 12 chr1 21810793 21810956 -260382708 - FRAM SINE Alu -14 162 2 2192 121 0 29 chr1 21810971 21811286 -260382378 - AluSx SINE Alu -6 306 1 603 62 0 12 chr1 21811843 21811923 -260381741 - MADE1 DNA Mariner 0 80 2 1296 174 5 14 chr1 21812229 21812447 -260381217 + AluJo SINE Alu 82 297 -15 855 95 26 0 chr1 21813057 21813173 -260380491 + FLAM_C SINE Alu 1 119 -24 347 271 136 7 chr1 21814454 21814609 -260379055 - MIR3 SINE MIR -20 188 14 257 321 76 15 chr1 21814623 21814661 -260379003 + L2 LINE L2 3175 3209 -104 2023 148 6 6 chr1 21814661 21814972 -260378692 - AluJo SINE Alu -1 311 1 257 321 76 15 chr1 21814972 21815064 -260378600 + L2 LINE L2 3209 3313 0 258 277 14 113 chr1 21817074 21817215 -260376449 + MIR3 SINE MIR 52 178 -30 198 0 0 0 chr1 21817223 21817245 -260376419 + (A)n Simple_repeat Simple_repeat 1 22 0 2200 76 38 17 chr1 21818165 21818455 -260375209 + AluSp SINE Alu 1 296 -17 897 249 56 13 chr1 21820404 21820637 -260373027 + MIR SINE MIR 13 255 -7 652 296 53 59 chr1 21820687 21821028 -260372636 + MLT1I LTR MaLR 71 409 0 1887 152 6 38 chr1 21821195 21821511 -260372153 - AluJo SINE Alu -6 306 1 1646 184 0 7 chr1 21821606 21821883 -260371781 + AluJo SINE Alu 24 298 -14 257 206 93 62 chr1 21822545 21822642 -260371022 + MIR3 SINE MIR 106 205 -3 1943 169 0 0 chr1 21822732 21823027 -260370637 - AluJb SINE Alu -17 295 1 252 291 36 36 chr1 21823269 21823434 -260370230 - L1ME4a LINE L1 -14 6107 5943 1776 96 0 0 chr1 21823516 21823735 -260369929 + AluSq SINE Alu 1 219 -94 754 133 0 0 chr1 21823735 21823869 -260369795 + AluSp/q SINE Alu 188 321 0 378 263 81 6 chr1 21823888 21824048 -260369616 - L1ME4a LINE L1 -303 5818 5647 562 261 25 53 chr1 21824979 21825139 -260368525 - MIR SINE MIR -2 260 103 2429 82 0 0 chr1 21825139 21825433 -260368231 + AluSq SINE Alu 1 294 -19 562 261 25 53 chr1 21825433 21825519 -260368145 - MIR SINE MIR -159 103 16 263 272 158 9 chr1 21826418 21826532 -260367132 - L2 LINE L2 -1 3312 3182 1122 320 91 37 chr1 21827159 21827941 -260365723 + L2 LINE L2 2034 2857 -457 237 338 0 0 chr1 21828261 21828335 -260365329 + L2 LINE L2 3231 3304 -9 2711 102 40 26 chr1 21829952 21830372 -260363292 - MSTA LTR MaLR -2 426 1 331 270 245 19 chr1 21830885 21831044 -260362620 + MIR SINE MIR 17 211 -51 2080 109 7 3 chr1 21831678 21832010 -260361654 + AluSx SINE Alu 1 333 0 248 335 52 0 chr1 21832177 21832332 -260361332 - L2 LINE L2 -1195 2119 1957 * 595 273 95 30 chr1 21832327 21832558 -260361106 - MIR SINE MIR -2 260 15 846 270 22 4 chr1 21832627 21832853 -260360811 - LTR16A LTR ERVL -7 443 214 383 314 73 0 chr1 21833031 21833155 -260360509 + MIR SINE MIR 45 177 -85 390 235 133 87 chr1 21833906 21834026 -260359638 - MIR SINE MIR -6 256 122 2038 100 7 27 chr1 21834026 21834327 -260359337 + AluSx SINE Alu 1 295 -17 390 235 133 87 chr1 21834327 21834402 -260359262 - MIR SINE MIR -140 122 52 210 263 112 20 chr1 21835086 21835178 -260358486 + MIR SINE MIR 47 145 -63 1543 231 54 39 chr1 21835314 21835443 -260358221 - MER113 DNA MER1_type? -51 470 344 1976 147 0 0 chr1 21835443 21835743 -260357921 - AluSx SINE Alu -12 300 1 1543 231 54 39 chr1 21835743 21836076 -260357588 - MER113 DNA MER1_type? -177 344 1 2154 115 0 10 chr1 21836289 21836593 -260357071 + AluSx SINE Alu 1 301 -11 3858 131 69 29 chr1 21836613 21837612 -260356052 - MER11A LTR ERVK 0 1266 1 253 341 3 0 chr1 21837622 21837692 -260355972 + MIR SINE MIR 40 111 -97 673 276 40 27 chr1 21837711 21837936 -260355728 - MIR SINE MIR -1 261 34 198 268 171 12 chr1 21837936 21838018 -260355646 + MIR SINE MIR 156 250 -12 884 303 38 58 chr1 21840616 21841061 -260352603 + MLT1K LTR MaLR 67 502 -86 243 388 23 0 chr1 21841134 21841263 -260352401 + L2 LINE L2 2713 2844 -470 5911 157 2 4 chr1 21841672 21842591 -260351073 + MER49 LTR ERV1 7 923 0 426 281 118 31 chr1 21842660 21842676 -260350988 - L2 LINE L2 -411 2903 2890 2280 75 0 13 chr1 21842676 21842981 -260350683 + AluY SINE Alu 1 301 -10 426 281 118 31 chr1 21842981 21843192 -260350472 - L2 LINE L2 -424 2890 2656 3764 129 81 94 chr1 21843230 21843433 -260350231 + MER4D LTR ERV1 9 213 -659 2083 125 0 0 chr1 21843433 21843728 -260349936 + AluSx SINE Alu 1 295 -17 3764 129 81 94 chr1 21843728 21843834 -260349830 + MER4D LTR ERV1 213 319 -553 2011 107 0 0 chr1 21843834 21844130 -260349534 - AluSx SINE Alu 0 307 12 3764 129 81 94 chr1 21844130 21844691 -260348973 + MER4D LTR ERV1 319 870 -2 649 285 144 52 chr1 21844691 21845157 -260348507 - L2 LINE L2 -695 2619 2111 184 268 18 18 chr1 21845268 21845324 -260348340 + L2 LINE L2 3217 3272 0 235 332 89 74 chr1 21845532 21845722 -260347942 - MIR SINE MIR -50 212 20 180 297 99 18 chr1 21846430 21846541 -260347123 - L2 LINE L2 -800 2514 2395 185 220 0 51 chr1 21847136 21847195 -260346469 + MIR3 SINE MIR 117 172 -36 415 250 275 25 chr1 21847720 21847930 -260345734 + MIR SINE MIR 2 261 -1 1095 237 88 101 chr1 21848314 21848545 -260345119 + MLT1H LTR MaLR 1 233 -316 621 204 9 0 chr1 21848545 21848658 -260345006 + MER81 DNA DNA 1 114 0 1095 237 88 101 chr1 21848658 21848982 -260344682 + MLT1H LTR MaLR 233 549 0 703 329 101 29 chr1 21849078 21849542 -260344122 - L2 LINE L2 -1 3271 2783 1627 200 84 14 chr1 21849667 21850037 -260343627 - MSTD LTR MaLR 0 396 1 613 269 83 37 chr1 21850464 21850706 -260342958 - L2 LINE L2 0 3313 3061 301 315 105 14 chr1 21851112 21851255 -260342409 + L2 LINE L2 2916 3071 -201 1186 258 67 76 chr1 21851255 21851779 -260341885 - MLT1H LTR MaLR 0 549 31 429 318 45 0 chr1 21851863 21852039 -260341625 + L2 LINE L2 3130 3313 0 4172 80 2 33 chr1 21852496 21852817 -260340847 + MER41A LTR ERV1 1 298 -256 1326 90 0 47 chr1 21852817 21853029 -260340635 + L1PA7 LINE L1 5953 6154 0 4172 80 2 33 chr1 21853029 21853279 -260340385 + MER41A LTR ERV1 298 554 0 385 320 66 35 chr1 21853322 21853581 -260340083 + L2 LINE L2 2816 3082 -190 250 246 130 0 chr1 21853733 21853802 -260339862 + MIR SINE MIR 182 259 -3 2174 182 35 45 chr1 21854068 21854578 -260339086 + MLT1D LTR MaLR 1 505 0 186 227 0 0 chr1 21854601 21854645 -260339019 + GA-rich Low_complexity Low_complexity 1 44 0 4846 84 9 0 chr1 21855375 21856020 -260337644 - L1PA10 LINE L1 -5 6163 5513 1613 71 22 0 chr1 21856026 21856252 -260337412 + L1PA10 LINE L1 5254 5484 -684 429 272 84 94 chr1 21856274 21856583 -260337081 + L2 LINE L2 2952 3257 -56 2088 147 2 91 chr1 21856635 21857063 -260336601 + MLT1B LTR MaLR 1 390 0 669 251 80 40 chr1 21857137 21857590 -260336074 - LTR33 LTR ERVL -16 505 1 270 239 194 75 chr1 21857960 21858034 -260335630 - MIR SINE MIR -8 254 190 710 189 0 8 chr1 21858034 21858161 -260335503 + FLAM_A SINE Alu 2 127 -6 270 239 194 75 chr1 21858161 21858220 -260335444 - MIR SINE MIR -72 190 105 592 249 96 35 chr1 21858350 21858579 -260335085 - MIR SINE MIR 0 262 20 270 133 89 0 chr1 21858795 21858840 -260334824 - MER20 DNA MER1_type -2 217 169 201 39 0 0 chr1 21858843 21858869 -260334795 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1858 88 36 0 chr1 21858872 21859123 -260334541 - AluSx SINE Alu -32 280 21 492 195 23 62 chr1 21859567 21859695 -260333969 - MER20 DNA MER1_type -39 180 58 338 330 28 51 chr1 21859888 21860064 -260333600 + MIR SINE MIR 20 191 -71 197 336 30 103 chr1 21860643 21860875 -260332789 + L2 LINE L2 3016 3230 -42 602 270 58 93 chr1 21860876 21861386 -260332278 + MLT1J LTR MaLR 3 600 -15 2062 138 0 0 chr1 21861549 21861853 -260331811 - AluSq SINE Alu -7 306 3 222 335 71 41 chr1 21862079 21862249 -260331415 - L2 LINE L2 -83 3189 3015 350 303 118 10 chr1 21862262 21862457 -260331207 + MIR SINE MIR 47 262 0 296 258 15 0 chr1 21862916 21862982 -260330682 + MIR3 SINE MIR 94 160 -48 697 211 41 35 chr1 21862983 21863154 -260330510 + MER5B DNA MER1_type 2 173 -5 451 331 11 11 chr1 21863191 21863366 -260330298 + MIR SINE MIR 68 242 -20 417 309 29 22 chr1 21863707 21863843 -260329821 - MIR3 SINE MIR -27 181 45 318 26 0 0 chr1 21863845 21863884 -260329780 + (A)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 21863900 21863921 -260329743 + AT_rich Low_complexity Low_complexity 1 21 0 435 239 68 34 chr1 21864444 21864561 -260329103 + MIR SINE MIR 142 262 0 982 298 116 18 chr1 21864586 21865042 -260328622 - LTR33 LTR ERVL 0 521 21 755 273 93 5 chr1 21865550 21865766 -260327898 + MIR SINE MIR 28 262 0 278 250 148 9 chr1 21865769 21865877 -260327787 + L2 LINE L2 3145 3267 -5 * 433 299 37 8 chr1 21865871 21866005 -260327659 - MIR SINE MIR -94 168 31 807 175 127 0 chr1 21866022 21866188 -260327476 - MER5A DNA MER1_type -2 187 1 701 113 0 16 chr1 21866564 21866688 -260326976 + (TTCC)n Simple_repeat Simple_repeat 1 122 0 2159 131 0 0 chr1 21866727 21867039 -260326625 - AluSx SINE Alu 0 312 1 378 294 20 0 chr1 21867518 21867620 -260326044 - MLT1L LTR MaLR -4 611 508 535 309 52 0 chr1 21867741 21867935 -260325729 + MIR SINE MIR 43 246 -16 2237 177 78 9 chr1 21868275 21868711 -260324953 - MLT1C LTR MaLR -1 466 1 372 307 53 7 chr1 21868731 21868881 -260324783 + L2 LINE L2 2895 3051 -221 538 224 191 0 chr1 21869058 21869210 -260324454 + MER5A DNA MER1_type 9 189 0 * 634 241 40 23 chr1 21869210 21869382 -260324282 + MIR SINE MIR 88 262 0 554 300 27 25 chr1 21869901 21870111 -260323553 - MIR SINE MIR -24 238 30 2022 125 0 7 chr1 21870292 21870597 -260323067 - AluSx SINE Alu -3 309 7 476 305 0 8 chr1 21870874 21871005 -260322659 - MIR SINE MIR -106 156 27 239 157 0 0 chr1 21871411 21871462 -260322202 + MER113 DNA MER1_type? 63 113 -408 347 221 176 43 chr1 21871652 21871816 -260321848 - MIR SINE MIR -61 147 16 2546 47 3 6 chr1 21872004 21872322 -260321342 - L1PA5 LINE L1 0 6154 5838 685 263 20 21 chr1 21873263 21873499 -260320165 + MLT1G1 LTR MaLR 1 239 -310 410 103 206 0 chr1 21873560 21873628 -260320036 + MLT1B LTR MaLR 21 81 -293 1232 200 34 37 chr1 21873688 21873983 -260319681 + MLT1B LTR MaLR 97 390 0 361 298 32 0 chr1 21874091 21874185 -260319479 + L2 LINE L2 2514 2610 -704 302 288 27 77 chr1 21874355 21874577 -260319087 - MLT1H LTR MaLR -257 292 82 662 276 114 35 chr1 21874695 21874949 -260318715 + L2 LINE L2 2696 2984 -288 2602 113 6 3 chr1 21874949 21875312 -260318352 + THE1B LTR MaLR 1 364 0 662 276 114 35 chr1 21875312 21875421 -260318243 + L2 LINE L2 2984 3083 -189 2649 126 5 0 chr1 21875441 21875823 -260317841 + MLT1B LTR MaLR 1 384 -6 373 230 246 8 chr1 21875883 21876009 -260317655 + L2 LINE L2 3117 3272 0 215 333 9 9 chr1 21876573 21876678 -260316986 + CT-rich Low_complexity Low_complexity 1 105 0 334 266 169 8 chr1 21877318 21877442 -260316222 + MIR SINE MIR 117 260 -2 289 240 125 0 chr1 21877870 21877974 -260315690 + L2 LINE L2 3180 3296 -17 1113 135 0 2 chr1 21877974 21878497 -260315167 + (TGGA)n Simple_repeat Simple_repeat 1 521 0 220 345 27 9 chr1 21878750 21878860 -260314804 + MIR SINE MIR 114 225 -37 297 244 95 31 chr1 21879155 21879288 -260314376 + MIR SINE MIR 61 201 -61 2413 62 0 3 chr1 21879301 21879609 -260314055 + AluY SINE Alu 1 307 -4 180 176 0 0 chr1 21879823 21879857 -260313807 + GA-rich Low_complexity Low_complexity 2 35 0 629 276 184 29 chr1 21880150 21880703 -260312961 + L2 LINE L2 2632 3272 0 441 302 189 6 chr1 21881321 21881490 -260312174 + MIR SINE MIR 7 206 -56 413 278 111 7 chr1 21881833 21881977 -260311687 - MIR SINE MIR -32 230 72 889 115 0 0 chr1 21882511 21882641 -260311023 - AluSg/x SINE Alu 0 309 180 2793 127 28 12 chr1 21882830 21883255 -260310409 - MSTB1 LTR MaLR 0 432 1 345 154 0 0 chr1 21883634 21883686 -260309978 - L2 LINE L2 0 3313 3262 397 336 142 10 chr1 21883687 21884192 -260309472 - L2 LINE L2 -249 3064 2497 195 242 0 0 chr1 21884590 21884641 -260309023 - MIR SINE MIR -87 121 70 218 365 42 10 chr1 21884817 21884913 -260308751 - L2 LINE L2 -32 3240 3142 391 267 48 0 chr1 21885361 21885466 -260308198 - L2 LINE L2 -9 3304 3195 544 319 169 44 chr1 21885479 21886444 -260307220 + L2 LINE L2 2190 3308 -5 247 316 89 0 chr1 21886467 21886546 -260307118 + MIR SINE MIR 161 246 -16 360 258 47 39 chr1 21887193 21887321 -260306343 + MIR SINE MIR 31 159 -103 515 343 129 13 chr1 21887381 21888046 -260305618 - L2 LINE L2 0 3313 2584 607 235 60 6 chr1 21888753 21888919 -260304745 - MER97b DNA MER1_type? -875 178 4 422 341 89 59 chr1 21889063 21889698 -260303966 - L2 LINE L2 0 3272 2619 2186 119 60 26 chr1 21889781 21890133 -260303531 + THE1B LTR MaLR 1 364 0 973 267 137 73 chr1 21890137 21890642 -260303022 - MLT1H LTR MaLR 0 549 13 192 40 0 0 chr1 21890700 21890725 -260302939 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 236 263 17 0 chr1 21891321 21891389 -260302275 + MIR SINE MIR 85 142 -66 774 226 80 10 chr1 21891453 21891652 -260302012 - MIR SINE MIR -48 214 2 1897 195 36 55 chr1 21891749 21891793 -260301871 + MLT1C LTR MaLR 1 44 -423 2846 62 23 13 chr1 21891793 21892177 -260301487 - L1PA8 LINE L1 -2 6170 5783 1897 195 36 55 chr1 21892177 21892608 -260301056 + MLT1C LTR MaLR 44 467 0 547 312 30 30 chr1 21893040 21893271 -260300393 + MIR SINE MIR 4 234 -28 314 313 111 7 chr1 21894030 21894174 -260299490 + MIR SINE MIR 34 192 -70 399 259 86 7 chr1 21894268 21894407 -260299257 + MIR SINE MIR 43 192 -70 311 127 16 0 chr1 21895418 21895481 -260298183 + (TG)n Simple_repeat Simple_repeat 2 65 0 482 119 12 0 chr1 21895581 21895665 -260297999 + (TC)n Simple_repeat Simple_repeat 1 85 0 209 258 48 0 chr1 21895669 21895731 -260297933 + CT-rich Low_complexity Low_complexity 6 70 0 184 172 35 0 chr1 21895746 21895804 -260297860 + CT-rich Low_complexity Low_complexity 1 60 0 455 232 36 0 chr1 21896300 21896468 -260297196 + CT-rich Low_complexity Low_complexity 2 175 0 1782 92 96 0 chr1 21898720 21899007 -260294657 - AluSp SINE Alu 0 312 1 1046 83 0 0 chr1 21899009 21899141 -260294523 - AluSp SINE Alu -181 132 1 220 299 52 0 chr1 21899148 21899225 -260294439 - MIR SINE MIR -102 160 80 2120 112 7 0 chr1 21900119 21900415 -260293249 - AluSq SINE Alu -15 298 1 500 258 0 16 chr1 21901242 21901370 -260292294 - L2 LINE L2 -1 3312 3187 679 235 73 17 chr1 21901598 21901777 -260291887 - MLT1I LTR MaLR -188 221 33 236 252 72 45 chr1 21902071 21902182 -260291482 + MIR SINE MIR 99 212 -50 1738 158 16 13 chr1 21902249 21902559 -260291105 - AluJo SINE Alu -1 311 1 449 285 52 12 chr1 21902788 21902960 -260290704 - MIR SINE MIR -35 227 49 467 316 52 14 chr1 21903159 21903371 -260290293 + MIR SINE MIR 5 224 -38 2021 151 0 0 chr1 21903644 21903956 -260289708 - AluSx SINE Alu 0 312 1 601 278 72 10 chr1 21904287 21904481 -260289183 + MIR SINE MIR 18 223 -39 790 297 22 16 chr1 21904746 21904996 -260288668 + MIR SINE MIR 14 262 0 279 315 75 34 chr1 21905539 21905685 -260287979 - MIR SINE MIR -3 259 108 196 146 195 0 chr1 21906686 21906727 -260286937 - L2 LINE L2 -3 3310 3262 349 250 52 0 chr1 21906808 21906904 -260286760 + L2 LINE L2 3208 3308 -5 260 318 90 26 chr1 21906992 21907181 -260286483 - L2 LINE L2 -222 3050 2850 342 206 0 0 chr1 21907775 21907843 -260285821 - MIR SINE MIR -132 130 63 193 203 81 40 chr1 21908144 21908218 -260285446 + MIR3 SINE MIR 13 89 -119 297 319 137 70 chr1 21908311 21908786 -260284878 - L2 LINE L2 -26 3246 2746 243 146 0 0 chr1 21908805 21908846 -260284818 + (TG)n Simple_repeat Simple_repeat 1 41 0 550 314 120 0 chr1 21909015 21909206 -260284458 + MIR SINE MIR 1 214 -48 912 223 40 32 chr1 21909212 21909459 -260284205 - L2 LINE L2 -1 3312 3064 691 270 81 54 chr1 21910199 21910532 -260283132 - L2 LINE L2 0 3313 2972 370 284 27 40 chr1 21910597 21910745 -260282919 - L2 LINE L2 -548 2766 2621 290 74 0 93 chr1 21910872 21910926 -260282738 - L2 LINE L2 0 3313 3265 350 209 270 0 chr1 21911734 21911849 -260281815 + MIR SINE MIR 117 262 0 261 317 100 17 chr1 21911878 21911998 -260281666 + L2 LINE L2 3142 3271 -1 2326 124 19 19 chr1 21912120 21912490 -260281174 - L1PA16 LINE L1 -1 6165 5796 566 311 90 50 chr1 21913710 21914160 -260279504 - L2 LINE L2 -339 2975 2498 441 0 0 0 chr1 21914160 21914209 -260279455 + (TG)n Simple_repeat Simple_repeat 2 50 0 566 311 90 50 chr1 21914209 21914301 -260279363 - L2 LINE L2 -816 2498 2411 227 256 115 0 chr1 21914359 21914437 -260279227 - MIR3 SINE MIR -11 197 111 297 353 35 0 chr1 21914515 21914631 -260279033 + MIR SINE MIR 29 148 -60 409 250 22 0 chr1 21915043 21915135 -260278529 + MIR SINE MIR 58 151 -57 2055 124 0 0 chr1 21915229 21915520 -260278144 - AluJb SINE Alu -16 296 6 288 53 0 0 chr1 21916243 21916281 -260277383 - MIR SINE MIR -61 147 110 378 229 229 7 chr1 21916375 21916519 -260277145 + MER5A DNA MER1_type 13 188 -1 502 278 43 19 chr1 21916562 21916724 -260276940 - MIR SINE MIR -69 193 28 282 322 23 0 chr1 21916807 21916894 -260276770 + Charlie8 DNA MER1_type 110 198 -2219 301 262 161 34 chr1 21917327 21917496 -260276168 + MIR SINE MIR 2 191 -56 208 388 9 9 chr1 21917535 21917651 -260276013 + MIR SINE MIR 1 116 -146 251 174 0 0 chr1 21917757 21917803 -260275861 - MIR SINE MIR -76 132 87 210 244 0 0 chr1 21917838 21917883 -260275781 - MIR SINE MIR -118 90 46 298 327 108 27 chr1 21918360 21918583 -260275081 + MIR SINE MIR 2 242 -20 591 329 70 37 chr1 21919118 21919492 -260274172 - L2 LINE L2 -5 3308 2923 503 284 89 26 chr1 21919749 21920056 -260273608 - L2 LINE L2 -184 3129 2791 324 324 63 0 chr1 21920369 21920480 -260273184 + L1MC/D LINE L1 5470 5587 -2198 271 296 189 6 chr1 21920908 21921067 -260272597 - MIR SINE MIR -19 243 56 351 293 18 89 chr1 21921103 21921169 -260272495 + MIR SINE MIR 34 103 -159 1950 84 4 0 chr1 21921169 21921432 -260272232 + AluY SINE Alu 42 305 -6 351 293 18 89 chr1 21921432 21921590 -260272074 + MIR SINE MIR 103 242 -20 627 225 106 12 chr1 21922227 21922387 -260271277 - MER5B DNA MER1_type -3 175 1 324 228 168 0 chr1 21922624 21922725 -260270939 - MIR3 SINE MIR -21 187 70 383 235 17 42 chr1 21923328 21923447 -260270217 - MIR3 SINE MIR -7 201 86 194 217 33 50 chr1 21923824 21923884 -260269780 - MIR SINE MIR -83 125 67 897 325 157 10 chr1 21925490 21925557 -260268107 - L2 LINE L2 -87 3226 3170 2212 102 0 0 chr1 21925557 21925861 -260267803 + AluSc SINE Alu 1 304 -5 897 325 157 10 chr1 21925861 21926515 -260267149 - L2 LINE L2 -143 3170 2396 238 213 27 27 chr1 21926525 21926600 -260267064 + (CAGAGA)n Simple_repeat Simple_repeat 4 78 0 283 265 157 0 chr1 21926964 21927066 -260266598 - MIR SINE MIR -26 236 119 575 253 59 12 chr1 21927259 21927429 -260266235 - MIR SINE MIR -62 200 23 457 298 64 11 chr1 21928089 21928298 -260265366 - MIR SINE MIR -6 256 38 306 341 59 15 chr1 21928389 21928524 -260265140 - L2 LINE L2 -20 3252 3112 399 293 82 30 chr1 21929268 21929444 -260264220 - MIR3 SINE MIR -7 201 17 298 330 10 10 chr1 21929537 21929640 -260264024 + MIR SINE MIR 47 149 -59 375 330 21 57 chr1 21929647 21929841 -260263823 - MER117 DNA MER1_type 0 197 11 207 0 0 0 chr1 21930714 21930737 -260262927 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1816 100 58 0 chr1 21930742 21931001 -260262663 - AluSg SINE Alu -36 274 1 309 278 9 52 chr1 21931020 21931135 -260262529 + MIR SINE MIR 65 174 -88 279 122 0 0 chr1 21931249 21931298 -260262366 + (CAT)n Simple_repeat Simple_repeat 2 50 0 711 299 19 5 chr1 21931403 21931614 -260262050 + MIR SINE MIR 25 238 -24 321 89 0 0 chr1 21931905 21931950 -260261714 + (TGG)n Simple_repeat Simple_repeat 1 45 0 249 159 0 0 chr1 21932777 21932821 -260260843 + GA-rich Low_complexity Low_complexity 3 46 0 678 227 0 8 chr1 21932889 21933021 -260260643 + FLAM_A SINE Alu 11 141 -1 750 310 122 5 chr1 21933127 21933504 -260260160 - L1ME4a LINE L1 -116 6005 5585 1906 110 0 38 chr1 21933540 21933831 -260259833 - AluSx SINE Alu -1 311 32 317 329 7 40 chr1 21933957 21934106 -260259558 - MIR3 SINE MIR -58 150 7 199 283 0 0 chr1 21935294 21935340 -260258324 - MIR SINE MIR -118 90 45 751 312 95 25 chr1 21935684 21936119 -260257545 - LTR16B LTR ERVL -24 440 1 320 290 63 14 chr1 21936194 21936366 -260257298 - MIR3 SINE MIR -12 250 70 * 407 223 24 114 chr1 21936354 21936456 -260257208 + MIR3 SINE MIR 55 139 -69 1975 120 0 0 chr1 21936456 21936802 -260256862 + AluSx SINE Alu 7 352 0 407 223 24 114 chr1 21936802 21936864 -260256800 + MIR3 SINE MIR 139 205 -3 403 306 10 67 chr1 21937412 21937480 -260256184 + MER5A DNA MER1_type 8 78 -111 1838 110 0 11 chr1 21937480 21937744 -260255920 + AluSx SINE Alu 37 297 -15 403 306 10 67 chr1 21937744 21937868 -260255796 + MER5A DNA MER1_type 78 189 0 679 237 73 17 chr1 21938261 21938438 -260255226 - Charlie8 DNA MER1_type -2132 285 99 316 336 58 54 chr1 21938677 21938781 -260254883 + L1M4 LINE L1 5497 5599 -585 2170 105 0 0 chr1 21938781 21939076 -260254588 + AluSx SINE Alu 1 295 -17 316 336 58 54 chr1 21939076 21939230 -260254434 + L1M4 LINE L1 5599 5756 -428 1610 151 13 30 chr1 21939278 21939583 -260254081 + AluJo SINE Alu 1 300 -12 2535 143 37 7 chr1 21939717 21940149 -260253515 - Tigger2 DNA MER2_type -1 2717 2273 426 159 0 0 chr1 21940138 21940207 -260253457 - Tigger2 DNA MER2_type -2649 69 1 * 520 279 122 20 chr1 21940772 21940969 -260252695 - MIR SINE MIR -17 245 29 237 359 99 39 chr1 21940986 21941298 -260252366 - L2 LINE L2 -5 3267 2937 2057 138 0 0 chr1 21941376 21941680 -260251984 - AluSx SINE Alu -8 304 1 334 240 18 30 chr1 21942332 21942474 -260251190 - MIR SINE MIR -56 206 70 1872 136 0 18 chr1 21942594 21942770 -260250894 - AluSx SINE Alu 0 308 138 2208 122 0 0 chr1 21942770 21943082 -260250582 - AluSq SINE Alu -1 312 1 1872 136 0 18 chr1 21943082 21943217 -260250447 - AluSx SINE Alu -170 138 2 1017 171 81 38 chr1 21943256 21943466 -260250198 - MER20 DNA MER1_type 0 219 1 1982 137 0 13 chr1 21943512 21943827 -260249837 + AluJb SINE Alu 1 311 -1 290 245 42 33 chr1 21944047 21944143 -260249521 + MIR3 SINE MIR 61 158 -50 209 295 16 0 chr1 21944160 21944221 -260249443 - L2 LINE L2 -3 3310 3249 189 0 0 0 chr1 21944452 21944473 -260249191 + (CA)n Simple_repeat Simple_repeat 1 21 0 351 277 10 0 chr1 21945209 21945310 -260248354 - L1ME1 LINE L1 -19 6147 6046 908 301 59 48 chr1 21945314 21945925 -260247739 - L1MC4a LINE L1 -1918 5890 5273 494 329 98 51 chr1 21945995 21946351 -260247313 + L1M4 LINE L1 4773 5145 -1001 423 119 0 0 chr1 21946609 21946676 -260246988 + (TCC)n Simple_repeat Simple_repeat 1 67 0 249 246 6 77 chr1 21947958 21948141 -260245523 + C-rich Low_complexity Low_complexity 3 172 0 397 293 40 83 chr1 21948600 21948900 -260244764 - L2 LINE L2 0 3313 3027 314 350 21 14 chr1 21949174 21949317 -260244347 + MIR SINE MIR 20 163 -99 279 273 104 59 chr1 21950114 21950334 -260243330 - HAL1b LINE L1 -10 1338 1109 660 285 22 26 chr1 21950420 21950648 -260243016 - MIR SINE MIR -35 227 1 508 226 202 45 chr1 21950677 21950969 -260242695 - L1ME LINE L1 -363 5758 5421 537 269 7 0 chr1 21951449 21951590 -260242074 + MER103 DNA DNA 13 154 -12 1693 165 6 69 chr1 21951682 21952015 -260241649 - AluJo SINE Alu 0 312 1 372 318 103 11 chr1 21952224 21952386 -260241278 - MIR SINE MIR -62 146 3 288 0 0 0 chr1 21953624 21953656 -260240008 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1885 126 7 0 chr1 21953656 21953934 -260239730 - AluSx SINE Alu -32 280 1 198 0 0 0 chr1 21953984 21954006 -260239658 + (T)n Simple_repeat Simple_repeat 1 22 0 422 231 113 86 chr1 21954031 21954217 -260239447 - MIR SINE MIR -26 236 46 476 228 47 2 chr1 21954581 21954733 -260238931 - MIR SINE MIR -62 146 35 254 315 56 0 chr1 21954997 21955105 -260238559 + MIR3 SINE MIR 88 201 -7 1630 155 56 11 chr1 21955491 21955624 -260238040 + AluJo SINE Alu 3 128 -184 2227 106 0 0 chr1 21955624 21955926 -260237738 + AluSg SINE Alu 1 302 -8 1630 155 56 11 chr1 21955926 21956076 -260237588 + AluJo SINE Alu 128 299 -13 370 324 21 42 chr1 21956102 21956244 -260237420 + MIR3 SINE MIR 54 192 -16 575 276 55 96 chr1 21957091 21957384 -260236280 - L2 LINE L2 -5 3267 2987 619 223 43 7 chr1 21958629 21958768 -260234896 + MIR3 SINE MIR 19 162 -46 208 293 27 27 chr1 21960644 21960719 -260232945 + MIR3 SINE MIR 82 156 -52 474 349 0 7 chr1 21961411 21961557 -260232107 + MIR3 SINE MIR 16 160 -48 310 294 59 10 chr1 21961805 21961907 -260231757 - L2 LINE L2 -7 3306 3200 1166 272 57 42 chr1 21963882 21963903 -260229761 - LTR16C LTR ERVL 0 491 472 540 234 0 9 chr1 21963903 21964014 -260229650 + MER81 DNA DNA 1 110 -4 1166 272 57 42 chr1 21964014 21964393 -260229271 - LTR16C LTR ERVL -19 472 85 262 298 32 0 chr1 21964684 21964778 -260228886 - LTR16C LTR ERVL -390 101 5 408 20 0 0 chr1 21965348 21965397 -260228267 + (TG)n Simple_repeat Simple_repeat 2 50 0 380 296 76 111 chr1 21966704 21967048 -260226616 + L2 LINE L2 2932 3263 -9 36 53 0 0 chr1 21967229 21967286 -260226378 + AT_rich Low_complexity Low_complexity 1 57 0 191 111 0 22 chr1 21967286 21967331 -260226333 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 241 328 8 25 chr1 21967331 21967450 -260226214 - MIR SINE MIR -128 134 18 313 282 8 57 chr1 21967899 21968023 -260225641 - MIR3 SINE MIR -9 199 82 2503 126 67 50 chr1 21968084 21968270 -260225394 + MSTC LTR MaLR 1 182 -246 2116 120 0 3 chr1 21968270 21968571 -260225093 + AluSq SINE Alu 1 300 -13 2503 126 67 50 chr1 21968571 21968805 -260224859 + MSTC LTR MaLR 182 428 0 570 208 0 0 chr1 21969142 21969248 -260224416 + MIR3 SINE MIR 82 187 -21 283 167 152 0 chr1 21969664 21969730 -260223934 + MIR SINE MIR 66 141 -121 312 271 7 57 chr1 21971294 21971434 -260222230 + GA-rich Low_complexity Low_complexity 6 138 0 1003 307 120 7 chr1 21971458 21972074 -260221590 + L2 LINE L2 1980 2665 -649 1248 132 0 0 chr1 21972108 21972290 -260221374 - AluY SINE Alu -129 182 1 714 65 0 0 chr1 21972291 21972383 -260221281 + AluSg/x SINE Alu 185 276 -36 899 63 42 0 chr1 21972390 21972532 -260221132 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 1168 262 65 32 chr1 21972535 21973094 -260220570 + L2 LINE L2 2722 3299 -14 244 300 25 0 chr1 21973094 21973174 -260220490 + GA-rich Low_complexity Low_complexity 3 84 0 244 258 16 0 chr1 21973695 21973757 -260219907 - L3 LINE CR1 -116 1461 1399 367 331 109 11 chr1 21973913 21974097 -260219567 - MIR SINE MIR -60 202 1 298 311 22 11 chr1 21974245 21974335 -260219329 + MIR SINE MIR 59 149 -59 626 269 19 60 chr1 21974756 21974972 -260218692 - MIR SINE MIR -53 209 3 185 339 0 46 chr1 21975671 21975780 -260217884 - MER5B DNA MER1_type -35 143 40 180 176 0 0 chr1 21975969 21976003 -260217661 + T-rich Low_complexity Low_complexity 1 34 0 289 278 19 28 chr1 21976196 21976304 -260217360 + MIR3 SINE MIR 15 121 -87 474 229 70 25 chr1 21976523 21976680 -260216984 + MER103 DNA DNA 1 164 -2 964 232 30 4 chr1 21976690 21976927 -260216737 - MIR SINE MIR -3 259 17 422 300 64 7 chr1 21977482 21977622 -260216042 - L2 LINE L2 -1 3312 3165 631 283 34 24 chr1 21977655 21977860 -260215804 - MIR SINE MIR -8 254 48 265 294 29 114 chr1 21977899 21978144 -260215520 - L2 LINE L2 -192 3080 2857 600 273 49 41 chr1 21978328 21978577 -260215087 + MIR SINE MIR 7 255 -7 449 310 183 49 chr1 21978948 21979797 -260213867 + L2 LINE L2 2308 3271 -1 191 261 43 43 chr1 21979891 21979960 -260213704 - MIR SINE MIR -102 106 38 189 347 28 0 chr1 21980568 21980640 -260213024 - MER5A DNA MER1_type -8 181 108 225 174 43 0 chr1 21980920 21980966 -260212698 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 968 234 181 13 chr1 21982259 21982563 -260211101 - MLT1K LTR MaLR -24 564 210 657 279 93 25 chr1 21982601 21982805 -260210859 - MIR SINE MIR -31 231 14 449 246 73 0 chr1 21982792 21982902 -260210762 - MER5A DNA MER1_type -4 185 68 * 260 288 53 45 chr1 21983000 21983132 -260210532 - MLT1K LTR MaLR -410 178 46 760 232 12 0 chr1 21983137 21983305 -260210359 + MIR SINE MIR 90 259 -3 400 319 125 17 chr1 21983627 21983859 -260209805 + MIR SINE MIR 2 258 -4 418 295 64 56 chr1 21984436 21984594 -260209070 + MIR SINE MIR 8 170 -92 2282 110 0 0 chr1 21984594 21984902 -260208762 + AluSc SINE Alu 1 308 -1 418 295 64 56 chr1 21984902 21984977 -260208687 + MIR SINE MIR 170 243 -19 520 266 49 0 chr1 21985162 21985305 -260208359 + L2 LINE L2 3154 3303 -10 271 189 19 0 chr1 21985316 21985369 -260208295 - L2 LINE L2 0 3272 3219 242 140 0 20 chr1 21986000 21986050 -260207614 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 296 216 0 23 chr1 21986140 21986228 -260207436 + (TGGA)n Simple_repeat Simple_repeat 1 86 0 186 118 0 0 chr1 21986428 21986462 -260207202 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 313 209 104 0 chr1 21986462 21986529 -260207135 - L2 LINE L2 -13 3259 3186 8664 184 65 99 chr1 21987107 21989097 -260204567 + L1MD2 LINE L1 34 2161 -4516 1382 141 0 42 chr1 21989097 21989310 -260204354 - AluJb SINE Alu -27 285 82 8664 184 65 99 chr1 21989310 21989917 -260203747 + L1MD2 LINE L1 2161 2787 -3890 1675 196 15 6 chr1 21989917 21990244 -260203420 + L1MD2 LINE L1 6094 6423 -330 357 274 62 0 chr1 21990735 21990848 -260202816 + L2 LINE L2 3152 3271 -1 2154 103 0 82 chr1 21990905 21991234 -260202430 + AluSx SINE Alu 1 302 -10 476 225 49 35 chr1 21991699 21991841 -260201823 + MIR SINE MIR 42 185 -77 258 206 0 0 chr1 21992013 21992081 -260201583 + (ATG)n Simple_repeat Simple_repeat 2 69 0 368 289 122 32 chr1 21992102 21992258 -260201406 - MIR SINE MIR -14 248 79 334 300 130 81 chr1 21992407 21992754 -260200910 - L2 LINE L2 0 3272 2909 451 273 106 32 chr1 21993172 21993393 -260200271 + MIR SINE MIR 15 261 -1 198 259 0 35 chr1 21993374 21993432 -260200232 - MIR SINE MIR -99 163 108 * 601 241 55 0 chr1 21993894 21994039 -260199625 + MIR3 SINE MIR 34 186 -22 972 262 9 9 chr1 21994647 21994872 -260198792 + MIR SINE MIR 34 258 -4 448 257 143 6 chr1 21995162 21995337 -260198327 - MIR3 SINE MIR -7 201 3 413 274 26 9 chr1 21995929 21996042 -260197622 + MIR SINE MIR 77 191 -71 291 273 45 34 chr1 21996087 21996175 -260197489 - MIR SINE MIR -56 152 64 820 251 30 0 chr1 21996200 21996403 -260197261 - MIR SINE MIR -40 222 14 372 272 34 41 chr1 21996541 21996688 -260196976 + MIR SINE MIR 67 212 -50 437 285 29 22 chr1 21996997 21997134 -260196530 - MIR SINE MIR -72 190 53 225 248 88 48 chr1 21997188 21997313 -260196351 - MIR SINE MIR -113 149 20 204 224 112 41 chr1 21997392 21997490 -260196174 - MIR SINE MIR -58 150 46 * 217 245 25 110 chr1 21997418 21997581 -260196083 + MIR3 SINE MIR 36 184 -24 379 344 8 0 chr1 21997600 21997725 -260195939 - MER5A DNA MER1_type 0 189 64 468 276 82 0 chr1 21998017 21998151 -260195513 - L2 LINE L2 0 3313 3169 180 121 30 0 chr1 21998244 21998277 -260195387 - MIR SINE MIR -117 145 112 260 287 44 59 chr1 21998524 21998660 -260195004 - L2 LINE L2 -2 3270 3137 764 242 16 6 chr1 21998721 21998903 -260194761 - MIR SINE MIR -38 224 41 230 316 32 42 chr1 22000414 22000509 -260193155 - MIR SINE MIR -135 127 34 227 178 22 0 chr1 22000543 22000555 -260193109 + MER34C LTR ERV1 25 37 -548 387 103 29 0 chr1 22000555 22000623 -260193041 + MER34B LTR ERV1 1 70 -495 922 136 0 0 chr1 22000623 22000755 -260192909 + AluJ SINE Alu 1 132 -170 21 0 0 0 chr1 22000755 22000776 -260192888 + AT_rich Low_complexity Low_complexity 1 21 0 6482 91 12 8 chr1 22000786 22002273 -260191391 + L1PA11 LINE L1 4680 6171 -3 917 183 77 0 chr1 22002282 22002451 -260191213 + AluJ SINE Alu 131 312 0 2610 150 31 0 chr1 22002472 22002926 -260190738 + MER34B LTR ERV1 77 544 -21 247 299 80 45 chr1 22003062 22003326 -260190338 - L2 LINE L2 -189 3083 2811 276 111 0 0 chr1 22003430 22003475 -260190189 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 252 188 0 31 chr1 22003483 22003547 -260190117 + (TGAA)n Simple_repeat Simple_repeat 4 65 0 347 237 161 0 chr1 22003590 22003683 -260189981 + MIR SINE MIR 33 140 -68 218 205 0 0 chr1 22005832 22005871 -260187793 - L3 LINE CR1 -15 1562 1524 975 118 0 20 chr1 22005881 22006033 -260187631 - L1PA16 LINE L1 0 6166 6018 192 97 0 0 chr1 22006193 22006224 -260187440 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 660 302 79 50 chr1 22006228 22006645 -260187019 - L2 LINE L2 -18 3295 2867 371 307 44 0 chr1 22006746 22006883 -260186781 - MIR3 SINE MIR -48 160 18 466 272 204 5 chr1 22007526 22007732 -260185932 + MIR SINE MIR 10 256 -6 297 75 0 0 chr1 22007938 22007978 -260185686 + (TG)n Simple_repeat Simple_repeat 1 40 0 355 353 58 51 chr1 22008103 22008398 -260185266 + L3 LINE CR1 332 628 -949 1155 268 63 40 chr1 22008454 22008850 -260184814 - L2 LINE L2 -3 3310 2906 318 156 0 52 chr1 22009010 22009087 -260184577 - L2 LINE L2 -386 2886 2814 185 268 42 42 chr1 22009087 22009158 -260184506 - L2 LINE L2 -694 2620 2550 * 739 276 131 0 chr1 22009135 22009356 -260184308 + MIR SINE MIR 5 254 -8 2577 171 34 3 chr1 22009361 22009859 -260183805 + L1MD3 LINE L1 6129 6254 -79 2077 128 24 7 chr1 22010004 22010300 -260183364 - AluSx SINE Alu -10 302 2 183 412 35 0 chr1 22010306 22010391 -260183273 + L3 LINE CR1 1393 1480 -97 494 268 124 0 chr1 22010670 22010823 -260182841 + MIR SINE MIR 10 181 -81 446 321 71 31 chr1 22011611 22011807 -260181857 - MIR SINE MIR -14 248 45 272 271 94 0 chr1 22011859 22011944 -260181720 - L2 LINE L2 -43 3229 3137 274 326 0 0 chr1 22012243 22012329 -260181335 + MIR SINE MIR 7 92 -170 1370 250 234 32 chr1 22012463 22013206 -260180458 - L2 LINE L2 0 3313 2383 4504 235 138 42 chr1 22013208 22015215 -260178449 + HAL1 LINE L1 1 2285 -222 4174 233 43 23 chr1 22015215 22017087 -260176577 + L1MB7 LINE L1 4 2248 -4711 * 6779 190 51 10 chr1 22017083 22017869 -260175795 + L1MB7 LINE L1 4455 5208 -1787 1923 148 3 10 chr1 22017869 22018160 -260175504 + AluJb SINE Alu 1 289 -23 6779 190 51 10 chr1 22018160 22019801 -260173863 + L1MB7 LINE L1 5208 6983 -12 521 233 89 20 chr1 22019830 22020032 -260173632 + HAL1 LINE L1 2292 2507 0 618 238 124 19 chr1 22020379 22020589 -260173075 - MIR SINE MIR -19 243 12 357 277 40 10 chr1 22020973 22021074 -260172590 - MIR3 SINE MIR -27 181 78 2354 86 0 3 chr1 22021221 22021511 -260172153 + AluSx SINE Alu 11 299 -13 1184 101 6 6 chr1 22021511 22021670 -260171994 + AluSg/x SINE Alu 132 290 -20 203 133 0 0 chr1 22021731 22021761 -260171903 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 542 246 15 30 chr1 22021828 22021962 -260171702 + MIR SINE MIR 28 159 -103 652 158 167 0 chr1 22021968 22022082 -260171582 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr1 22022082 22022103 -260171561 + AT_rich Low_complexity Low_complexity 1 21 0 214 143 0 0 chr1 22022530 22022565 -260171099 - MIR SINE MIR -59 149 115 1841 185 3 0 chr1 22023207 22023499 -260170165 + AluJb SINE Alu 1 293 -19 432 310 25 6 chr1 22023513 22023671 -260169993 + L2 LINE L2 3151 3311 -2 441 269 110 0 chr1 22023721 22023866 -260169798 - MIR SINE MIR -55 207 47 326 291 0 47 chr1 22024150 22024277 -260169387 + GA-rich Low_complexity Low_complexity 2 122 0 469 189 180 0 chr1 22025120 22025242 -260168422 + MER45A DNA AcHobo 34 177 -1 209 314 129 0 chr1 22025323 22025393 -260168271 - MIR SINE MIR -21 241 163 372 227 9 82 chr1 22025459 22025503 -260168161 - MER5A DNA MER1_type -84 105 59 2097 128 16 0 chr1 22025503 22025808 -260167856 - AluSx SINE Alu -2 310 1 372 227 9 82 chr1 22025808 22025873 -260167791 - MER5A DNA MER1_type -130 59 4 875 219 77 9 chr1 22025995 22026228 -260167436 + LTR16A1 LTR ERVL 209 457 0 347 259 161 0 chr1 22026228 22026340 -260167324 - MIR SINE MIR -99 163 34 1254 109 36 0 chr1 22026677 22026869 -260166795 + MSTA LTR MaLR 1 199 -229 2311 114 0 0 chr1 22026873 22027172 -260166492 + AluSp SINE Alu 1 299 -14 718 129 17 0 chr1 22027285 22027401 -260166263 + AluSg/x SINE Alu 179 296 -16 387 307 12 91 chr1 22027402 22027643 -260166021 - L2 LINE L2 -621 2693 2472 566 234 99 14 chr1 22028005 22028146 -260165518 + MIR3 SINE MIR 16 168 -40 938 280 172 6 chr1 22028146 22028507 -260165157 + MLT1K LTR MaLR 161 581 -7 255 192 75 92 chr1 22028573 22028693 -260164971 + L2 LINE L2 2942 3059 -213 528 216 85 20 chr1 22028755 22028908 -260164756 - MER103 DNA DNA -2 164 2 209 343 0 0 chr1 22029039 22029106 -260164558 - L2 LINE L2 -23 3290 3224 319 327 63 0 chr1 22029150 22029269 -260164395 + MIR3 SINE MIR 43 169 -39 385 291 9 0 chr1 22029269 22029379 -260164285 + MLT1K LTR MaLR 161 271 -317 2306 129 0 0 chr1 22029458 22029768 -260163896 + AluSx SINE Alu 1 310 -2 563 309 32 18 chr1 22029972 22030189 -260163475 + MIR SINE MIR 33 256 -6 1590 279 49 27 chr1 22030512 22031067 -260162597 + MLT1E LTR MaLR 27 593 0 324 240 80 60 chr1 22031067 22031179 -260162485 - MLT1K LTR MaLR -49 539 425 273 286 0 0 chr1 22031179 22031263 -260162401 - LTR16C LTR ERVL 0 491 408 326 266 43 22 chr1 22031324 22031463 -260162201 - LTR16C LTR ERVL -251 240 99 640 271 45 14 chr1 22031550 22031771 -260161893 - MLT1K LTR MaLR -163 425 198 536 215 31 63 chr1 22031932 22032009 -260161655 - MER112 DNA MER1_type -36 224 146 915 127 9 167 chr1 22032009 22032230 -260161434 - MER5A DNA MER1_type 0 189 4 536 215 31 63 chr1 22032230 22032343 -260161321 - MER112 DNA MER1_type -114 146 40 2369 116 0 0 chr1 22032343 22032653 -260161011 - AluSx SINE Alu -2 310 1 334 265 120 16 chr1 22032685 22032803 -260160861 - MIR SINE MIR -92 116 2 636 232 119 8 chr1 22032882 22033203 -260160461 - MLT1J LTR MaLR -28 483 84 452 310 120 0 chr1 22034356 22034540 -260159124 - MIR SINE MIR -6 256 51 253 181 0 28 chr1 22036372 22036444 -260157220 + (CA)n Simple_repeat Simple_repeat 1 70 0 201 317 67 10 chr1 22036827 22036931 -260156733 + MIR SINE MIR 22 131 -77 1833 133 31 20 chr1 22037022 22037316 -260156348 + AluSx SINE Alu 1 297 -15 416 263 166 12 chr1 22037559 22037727 -260155937 + MIR3 SINE MIR 7 196 -12 199 352 105 0 chr1 22037867 22037972 -260155692 - MIR SINE MIR -98 164 49 647 258 56 14 chr1 22037989 22038202 -260155462 - MIR SINE MIR -38 224 3 427 303 26 79 chr1 22038318 22038661 -260155003 - MLT1H LTR MaLR -2 547 223 198 136 0 0 chr1 22038661 22038705 -260154959 + (GA)n Simple_repeat Simple_repeat 2 45 0 1042 204 54 5 chr1 22038705 22038926 -260154738 - MLT1H LTR MaLR -317 232 1 339 250 0 86 chr1 22038976 22039092 -260154572 - MIR3 SINE MIR -8 200 95 703 272 40 18 chr1 22039395 22039619 -260154045 - MIR SINE MIR 0 262 34 1847 117 0 41 chr1 22039781 22040072 -260153592 + AluSx SINE Alu 19 297 -15 988 266 38 13 chr1 22040085 22040322 -260153342 + MIR SINE MIR 20 262 0 810 262 128 52 chr1 22041440 22041863 -260151801 + L2 LINE L2 2844 3298 -15 267 227 80 34 chr1 22041886 22041974 -260151690 - MIR SINE MIR -73 189 98 2084 168 139 34 chr1 22041982 22042507 -260151157 + L1ME1 LINE L1 5484 6063 -103 326 250 11 43 chr1 22042513 22042605 -260151059 + MER21B LTR ERV1 1 89 -774 2400 240 18 75 chr1 22042679 22043053 -260150611 + MER21B LTR ERV1 133 448 -415 1879 161 20 0 chr1 22043053 22043351 -260150313 + AluSx SINE Alu 6 309 -3 2400 240 18 75 chr1 22043351 22043697 -260149967 + MER21B LTR ERV1 448 812 -51 473 204 0 35 chr1 22043735 22043848 -260149816 + L1ME1 LINE L1 6054 6162 -4 198 213 164 0 chr1 22043867 22043928 -260149736 + MIR SINE MIR 42 112 -96 460 267 25 17 chr1 22044130 22044250 -260149414 - MER115 DNA AcHobo -382 311 191 * 617 264 0 0 chr1 22044240 22044380 -260149284 + MER21B LTR ERV1 239 378 -485 539 321 77 0 chr1 22044406 22044602 -260149062 - MER115 DNA AcHobo -475 218 8 577 283 49 26 chr1 22044831 22045066 -260148598 - MIR SINE MIR -9 253 16 845 218 73 0 chr1 22045178 22045357 -260148307 - AluJo SINE Alu -1 311 120 2246 101 7 0 chr1 22045596 22045902 -260147762 + AluSx SINE Alu 1 308 -4 342 224 0 0 chr1 22045978 22046094 -260147570 + (TG)n Simple_repeat Simple_repeat 2 117 0 603 202 0 8 chr1 22046105 22046757 -260146907 + (TG)n Simple_repeat Simple_repeat 1 646 0 677 268 11 0 chr1 22046936 22047119 -260146545 - MIR SINE MIR -2 260 76 2378 80 0 0 chr1 22047433 22047735 -260145929 + AluSx SINE Alu 1 302 -10 254 182 234 13 chr1 22047858 22047935 -260145729 - MIR3 SINE MIR -25 183 90 351 319 0 18 chr1 22048588 22048701 -260144963 - L2 LINE L2 0 3313 3203 740 261 58 19 chr1 22048968 22049175 -260144489 - MIR SINE MIR -35 227 13 471 263 17 0 chr1 22049446 22049564 -260144100 + L2 LINE L2 3188 3307 -6 325 308 17 25 chr1 22049629 22049749 -260143915 - MER5A DNA MER1_type -43 146 28 2187 137 33 38 chr1 22050014 22050380 -260143284 + THE1B LTR MaLR 1 364 0 318 252 35 21 chr1 22050483 22050626 -260143038 + GA-rich Low_complexity Low_complexity 2 146 0 1783 170 0 7 chr1 22050818 22051118 -260142546 - AluJo SINE Alu -14 298 1 208 244 0 0 chr1 22051348 22051393 -260142271 + MIR3 SINE MIR 120 164 -44 537 298 170 10 chr1 22051429 22051877 -260141787 + L2 LINE L2 2775 3313 0 192 248 324 0 chr1 22051954 22052059 -260141605 - MIR SINE MIR -96 166 28 545 234 16 16 chr1 22052604 22052732 -260140932 + MIR SINE MIR 20 147 -115 242 250 115 47 chr1 22052841 22052989 -260140675 + L2 LINE L2 2934 3091 -181 381 284 14 24 chr1 22053105 22053272 -260140392 + GA-rich Low_complexity Low_complexity 2 289 0 485 300 64 36 chr1 22054038 22054258 -260139406 - MIR SINE MIR -1 261 36 669 293 33 22 chr1 22054442 22054715 -260138949 - L1ME4a LINE L1 -232 5889 5614 212 283 0 0 chr1 22055046 22055099 -260138565 - MIR SINE MIR -119 143 91 438 231 0 0 chr1 22055365 22055508 -260138156 + (TG)n Simple_repeat Simple_repeat 2 144 0 313 350 67 25 chr1 22055539 22055779 -260137885 + MIR SINE MIR 12 261 -1 249 258 0 45 chr1 22055819 22055885 -260137779 - L2 LINE L2 0 3313 3251 238 351 48 11 chr1 22055976 22056164 -260137500 + MIR SINE MIR 68 262 0 2118 119 0 0 chr1 22056248 22056551 -260137113 + AluSx SINE Alu 1 303 -9 530 233 30 8 chr1 22057004 22057137 -260136527 + MIR SINE MIR 127 262 0 363 320 61 91 chr1 22057267 22057469 -260136195 - L2 LINE L2 -69 3203 3018 2241 98 3 9 chr1 22057469 22057784 -260135880 - AluSq SINE Alu 0 313 1 363 320 61 91 chr1 22057784 22057990 -260135674 - L2 LINE L2 -254 3018 2807 2197 110 7 0 chr1 22058015 22058324 -260135340 - AluY SINE Alu 0 311 1 1278 193 8 4 chr1 22058338 22058603 -260135061 + L1MD3 LINE L1 7730 7995 0 347 336 187 7 chr1 22058609 22058898 -260134766 - L2 LINE L2 -541 2773 2433 375 290 119 86 chr1 22058906 22059083 -260134581 - MLT1K LTR MaLR -9 579 409 1993 140 7 3 chr1 22059083 22059391 -260134273 - AluSx SINE Alu -3 309 1 375 290 119 86 chr1 22059391 22059758 -260133906 - MLT1K LTR MaLR -179 409 17 686 268 29 61 chr1 22060395 22060641 -260133023 + MIR SINE MIR 20 257 -5 239 191 16 0 chr1 22060689 22060752 -260132912 + (TGGA)n Simple_repeat Simple_repeat 4 67 0 528 194 0 0 chr1 22060812 22060946 -260132718 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 2134 171 30 30 chr1 22060958 22061105 -260132559 + MSTD LTR MaLR 4 150 -246 2322 77 0 0 chr1 22061105 22061402 -260132262 - AluY SINE Alu -14 297 1 2134 171 30 30 chr1 22061402 22061647 -260132017 + MSTD LTR MaLR 149 396 0 302 160 0 27 chr1 22061673 22061748 -260131916 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 234 383 16 16 chr1 22061748 22061876 -260131788 - L2 LINE L2 -66 3206 3079 362 355 50 0 chr1 22062473 22062614 -260131050 + MIR3 SINE MIR 45 192 -16 320 321 45 8 chr1 22062677 22062811 -260130853 + MIR SINE MIR 82 220 -42 245 244 139 0 chr1 22062953 22063039 -260130625 - MIR SINE MIR -79 129 32 240 35 0 0 chr1 22063320 22063349 -260130315 + (CTG)n Simple_repeat Simple_repeat 2 30 0 605 323 15 0 chr1 22063484 22063682 -260129982 + MIR SINE MIR 11 211 -51 478 301 118 6 chr1 22063693 22064050 -260129614 - LTR16A LTR ERVL -6 444 3 705 188 0 0 chr1 22064084 22064233 -260129431 + (CAT)n Simple_repeat Simple_repeat 2 150 0 752 193 17 0 chr1 22064257 22064433 -260129231 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 549 241 0 0 chr1 22065144 22065314 -260128350 + (CACCAT)n Simple_repeat Simple_repeat 4 173 0 508 303 21 43 chr1 22065343 22065531 -260128133 - MIR SINE MIR -65 197 14 512 330 157 16 chr1 22065946 22066322 -260127342 + L2 LINE L2 2844 3272 0 203 181 12 133 chr1 22066602 22066685 -260126979 - MIR SINE MIR -72 136 64 202 316 0 0 chr1 22066874 22066931 -260126733 + C-rich Low_complexity Low_complexity 2 58 0 578 330 68 30 chr1 22067498 22067995 -260125669 + L2 LINE L2 2462 2977 -337 1210 247 148 34 chr1 22068075 22068601 -260125063 + MLT2F LTR ERVL 22 607 -56 193 337 24 0 chr1 22068735 22068818 -260124846 + L2 LINE L2 3164 3248 -24 311 296 134 12 chr1 22070235 22070407 -260123257 - MIR SINE MIR -33 229 37 185 276 35 0 chr1 22070903 22070961 -260122703 - MIR SINE MIR -202 60 1 1224 208 117 47 chr1 22071000 22071341 -260122323 - MLT1A1 LTR MaLR 0 365 1 999 103 0 0 chr1 22071352 22071498 -260122166 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 258 172 35 0 chr1 22071875 22071933 -260121731 + (GCTG)n Simple_repeat Simple_repeat 4 63 0 938 191 38 24 chr1 22072545 22072754 -260120910 - MIR SINE MIR 0 262 51 411 254 46 101 chr1 22072789 22072865 -260120799 - L1ME4a LINE L1 -225 5896 5817 2122 85 0 3 chr1 22072865 22073188 -260120476 - AluSq SINE Alu 0 323 2 411 254 46 101 chr1 22073188 22073326 -260120338 - L1ME4a LINE L1 -304 5817 5692 646 314 93 29 chr1 22073760 22074168 -260119496 - L2 LINE L2 -3 3269 2836 206 246 297 25 chr1 22074556 22074674 -260118990 - MIR SINE MIR -13 249 100 209 289 0 0 chr1 22075275 22075327 -260118337 + MIR SINE MIR 80 131 -131 583 198 30 84 chr1 22075437 22075566 -260118098 + MIR SINE MIR 86 206 -56 1645 175 6 19 chr1 22075566 22075880 -260117784 + AluJo SINE Alu 2 311 -1 583 198 30 84 chr1 22075880 22075917 -260117747 + MIR SINE MIR 206 243 -19 259 333 28 9 chr1 22075936 22076044 -260117620 + MIR SINE MIR 150 259 -3 280 213 16 0 chr1 22076073 22076134 -260117530 - MIR SINE MIR -118 144 83 1227 147 18 18 chr1 22076163 22076381 -260117283 - MER20 DNA MER1_type -1 218 1 250 218 82 73 chr1 22076744 22076854 -260116810 + L2 LINE L2 3160 3270 -2 445 224 69 151 chr1 22076930 22076953 -260116711 + MIR SINE MIR 13 36 -226 2373 76 0 3 chr1 22076953 22077257 -260116407 + AluSq SINE Alu 1 303 -10 445 224 69 151 chr1 22077257 22077478 -260116186 + MIR SINE MIR 36 237 -25 193 286 63 0 chr1 22078280 22078343 -260115321 - MIR3 SINE MIR -25 183 117 * 774 292 29 12 chr1 22078330 22078570 -260115094 + MIR SINE MIR 13 256 -6 190 256 0 0 chr1 22078589 22078632 -260115032 - MIR SINE MIR -117 91 49 268 81 0 0 chr1 22079832 22079869 -260113795 + L1MC3 LINE L1 7059 7095 -690 356 286 0 0 chr1 22079871 22079962 -260113702 + MLT1F1 LTR MaLR 35 125 -442 2262 177 128 9 chr1 22079962 22080493 -260113171 + L1MC3 LINE L1 7189 7782 -3 426 200 0 22 chr1 22080664 22080754 -260112910 + L2 LINE L2 3225 3312 -1 334 279 78 8 chr1 22081250 22081379 -260112285 - MIR SINE MIR -100 162 25 634 191 30 0 chr1 22082252 22082383 -260111281 + MIR SINE MIR 47 181 -81 465 278 117 17 chr1 22083454 22083634 -260110030 - MIR SINE MIR -48 214 17 324 0 0 0 chr1 22084413 22084449 -260109215 + (TG)n Simple_repeat Simple_repeat 2 37 0 188 75 0 50 chr1 22084960 22085000 -260108664 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 204 40 0 0 chr1 22085016 22085041 -260108623 + (TCC)n Simple_repeat Simple_repeat 2 26 0 35 95 0 0 chr1 22086944 22087049 -260106615 + GC_rich Low_complexity Low_complexity 1 105 0 29 0 0 0 chr1 22087229 22087258 -260106406 + GC_rich Low_complexity Low_complexity 1 29 0 476 233 28 50 chr1 22087858 22088038 -260105626 + GA-rich Low_complexity Low_complexity 2 177 0 25 0 0 0 chr1 22088169 22088194 -260105470 + GC_rich Low_complexity Low_complexity 1 25 0 192 77 0 0 chr1 22088643 22088669 -260104995 + (AGGGGG)n Simple_repeat Simple_repeat 5 30 0 466 325 83 38 chr1 22089365 22089605 -260104059 + MIR SINE MIR 2 252 -10 393 253 127 13 chr1 22089671 22089829 -260103835 - MIR3 SINE MIR -24 184 9 269 196 109 93 chr1 22089971 22090151 -260103513 - MIR SINE MIR -47 215 36 202 242 137 73 chr1 22090510 22090634 -260103030 - MIR SINE MIR -50 212 81 474 256 156 10 chr1 22090955 22091010 -260102654 + MIR SINE MIR 1 47 -215 1671 184 0 3 chr1 22091010 22091303 -260102361 + AluJo SINE Alu 1 292 -20 474 256 156 10 chr1 22091303 22091483 -260102181 + MIR SINE MIR 47 262 0 190 255 0 0 chr1 22091721 22091768 -260101896 + MIR3 SINE MIR 152 198 -10 459 0 0 0 chr1 22092367 22092418 -260101246 + (CA)n Simple_repeat Simple_repeat 1 51 0 218 213 64 0 chr1 22092487 22092534 -260101130 - L2 LINE L2 0 3272 3223 292 172 17 0 chr1 22092773 22092831 -260100833 - MIR3 SINE MIR -41 167 109 213 259 37 0 chr1 22093458 22093539 -260100125 - MIR SINE MIR -99 163 80 195 337 12 12 chr1 22093802 22093888 -260099776 - MIR SINE MIR -119 143 58 426 276 58 26 chr1 22094630 22094786 -260098878 + MIR SINE MIR 34 194 -68 224 275 0 25 chr1 22095200 22095280 -260098384 + GA-rich Low_complexity Low_complexity 3 80 0 207 222 44 0 chr1 22096077 22096122 -260097542 + L2 LINE L2 3218 3264 -8 421 259 104 6 chr1 22096624 22096801 -260096863 - MIR3 SINE MIR -3 205 11 607 283 106 4 chr1 22097053 22097279 -260096385 + MIR SINE MIR 14 262 0 305 287 56 83 chr1 22097401 22097578 -260096086 - L2 LINE L2 -186 3086 2906 1657 164 7 23 chr1 22097578 22097883 -260095781 - AluJo SINE Alu -4 308 9 305 287 56 83 chr1 22097883 22098127 -260095537 - L2 LINE L2 -366 2906 2678 2470 136 40 38 chr1 22098323 22098750 -260094914 + MSTA LTR MaLR 1 428 0 258 266 266 0 chr1 22098801 22098895 -260094769 + L2 LINE L2 3154 3272 0 1990 114 14 0 chr1 22098906 22099195 -260094469 + AluSq SINE Alu 1 293 -20 298 361 57 45 chr1 22100711 22100955 -260092709 + MIR SINE MIR 10 256 -6 278 328 22 50 chr1 22103602 22103782 -260089882 - MER5A DNA MER1_type 0 189 15 1633 177 3 14 chr1 22104119 22104401 -260089263 + AluJo SINE Alu 1 281 -31 2045 123 3 0 chr1 22104401 22104685 -260088979 - AluSx SINE Alu -27 285 1 1633 177 3 14 chr1 22104685 22104696 -260088968 + AluJo SINE Alu 281 291 -21 27 29 0 0 chr1 22104696 22104730 -260088934 + AT_rich Low_complexity Low_complexity 1 34 0 355 252 133 15 chr1 22104799 22104934 -260088730 - MIR SINE MIR -38 224 74 28 0 0 0 chr1 22105162 22105190 -260088474 + AT_rich Low_complexity Low_complexity 1 28 0 1814 166 7 0 chr1 22105726 22106021 -260087643 - AluJb SINE Alu -15 297 1 335 273 81 0 chr1 22106199 22106298 -260087366 - L2 LINE L2 -10 3262 3156 581 253 0 20 chr1 22106483 22106633 -260087031 + L2 LINE L2 3167 3313 0 664 189 69 6 chr1 22106634 22106809 -260086855 - MIR SINE MIR -3 259 74 368 301 87 20 chr1 22106866 22107065 -260086599 + MIR SINE MIR 40 249 -13 1794 175 7 0 chr1 22107154 22107463 -260086201 + AluJo SINE Alu 1 311 -1 283 215 0 32 chr1 22107467 22107560 -260086104 + GA-rich Low_complexity Low_complexity 3 92 0 302 160 0 0 chr1 22107930 22107980 -260085684 - AluSp/q SINE Alu -6 297 248 325 231 44 44 chr1 22108129 22108220 -260085444 - L2 LINE L2 -13 3259 3169 181 312 269 0 chr1 22108291 22108384 -260085280 + MIR SINE MIR 33 150 -58 2333 96 0 0 chr1 22108419 22108731 -260084933 + AluSx SINE Alu 1 312 0 1850 108 48 10 chr1 22108796 22109091 -260084573 + AluSx SINE Alu 1 306 -6 584 279 249 10 chr1 22109213 22109518 -260084146 + L2 LINE L2 2936 3313 0 293 283 94 25 chr1 22110328 22110487 -260083177 - MIR SINE MIR -44 218 49 430 292 146 41 chr1 22110582 22110801 -260082863 - MIR SINE MIR 0 262 21 1718 135 42 14 chr1 22110904 22111193 -260082471 - AluJo SINE Alu -15 297 1 463 288 43 33 chr1 22111208 22111358 -260082306 - L1MC/D LINE L1 -2129 5679 5525 2180 113 3 0 chr1 22111358 22111658 -260082006 - AluSx SINE Alu -11 301 1 463 288 43 33 chr1 22111658 22111691 -260081973 - L1MC/D LINE L1 -2283 5525 5494 232 236 14 0 chr1 22112043 22112115 -260081549 + L1MC/D LINE L1 5703 5775 -2033 1123 75 0 7 chr1 22112391 22112537 -260081127 + AluSq/x SINE Alu 1 145 -168 2182 89 6 25 chr1 22112537 22112852 -260080812 + AluSp SINE Alu 1 309 -4 233 317 123 45 chr1 22112859 22113384 -260080280 - L2 LINE L2 0 3272 2698 233 299 37 56 chr1 22114179 22114286 -260079378 - L2 LINE L2 -12 3301 3197 2122 106 0 20 chr1 22114391 22114693 -260078971 + AluSx SINE Alu 1 296 -16 1678 123 14 35 chr1 22114718 22115003 -260078661 + AluSq SINE Alu 1 279 -34 197 148 0 19 chr1 22115004 22115058 -260078606 + (GA)n Simple_repeat Simple_repeat 2 54 0 843 249 24 0 chr1 22115058 22115227 -260078437 + FRAM SINE Alu 2 174 -2 362 145 0 14 chr1 22115227 22115296 -260078368 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 2253 97 7 0 chr1 22115465 22115765 -260077899 + AluSc SINE Alu 1 302 -7 2175 106 0 3 chr1 22116149 22116451 -260077213 - AluSx SINE Alu -11 301 1 433 128 128 0 chr1 22116459 22116553 -260077111 - L1MA10 LINE L1 -1 6333 6228 1991 166 19 48 chr1 22116553 22116932 -260076732 - LOR1b LTR ERV1 0 461 94 2224 100 0 3 chr1 22116954 22117255 -260076409 - AluSg SINE Alu -10 300 1 2106 105 10 7 chr1 22117274 22117580 -260076084 - AluSx SINE Alu -5 307 1 10130 62 47 78 chr1 22117580 22117734 -260075930 + HUERS-P1 LTR ERV1 2210 2367 -3896 2181 101 7 0 chr1 22117734 22118042 -260075622 + AluSp SINE Alu 1 310 -3 10130 62 47 78 chr1 22118042 22118364 -260075300 + HUERS-P1 LTR ERV1 2367 2698 -3565 2081 91 25 7 chr1 22118364 22118649 -260075015 + AluSq SINE Alu 1 290 -23 10130 62 47 78 chr1 22118649 22118686 -260074978 + HUERS-P1 LTR ERV1 2698 2735 -3528 2381 87 0 0 chr1 22118686 22118998 -260074666 + AluSx SINE Alu 1 312 0 10130 62 47 78 chr1 22118998 22119780 -260073884 + HUERS-P1 LTR ERV1 2735 3540 -2723 1998 101 35 0 chr1 22119780 22120066 -260073598 + AluSx SINE Alu 5 300 -12 10130 62 47 78 chr1 22120066 22120260 -260073404 + HUERS-P1 LTR ERV1 3540 3739 -2524 2233 88 3 0 chr1 22120260 22120554 -260073110 + AluSq SINE Alu 1 295 -18 1977 112 35 0 chr1 22120560 22120846 -260072818 + AluSx SINE Alu 1 296 -16 10130 62 47 78 chr1 22120846 22121040 -260072624 + HUERS-P1 LTR ERV1 3744 3851 -2412 1130 58 7 0 chr1 22121041 22121179 -260072485 - AluSp SINE Alu -174 139 1 889 188 38 0 chr1 22121203 22121363 -260072301 + FRAM SINE Alu 1 166 0 214 303 50 30 chr1 22122374 22122473 -260071191 + MIR SINE MIR 8 108 -154 200 195 0 24 chr1 22123148 22123189 -260070475 + G-rich Low_complexity Low_complexity 4 43 0 233 115 0 19 chr1 22124466 22124518 -260069146 + (GGA)n Simple_repeat Simple_repeat 2 52 0 36 23 0 0 chr1 22124579 22124622 -260069042 + GC_rich Low_complexity Low_complexity 1 43 0 855 154 37 37 chr1 22126834 22126996 -260066668 + AluJo SINE Alu 126 287 -25 300 27 0 0 chr1 22127084 22127121 -260066543 + (CA)n Simple_repeat Simple_repeat 2 38 0 423 295 35 95 chr1 22128250 22128573 -260065091 + L2 LINE L2 2845 3135 -137 2171 97 10 0 chr1 22128573 22128872 -260064792 - AluSp SINE Alu -11 302 1 423 295 35 95 chr1 22128872 22128999 -260064665 + L2 LINE L2 3135 3268 -4 355 324 1 39 chr1 22129401 22129549 -260064115 + MIR3 SINE MIR 1 144 -64 2259 103 3 0 chr1 22129549 22129860 -260063804 + AluSq SINE Alu 1 312 -1 355 324 1 39 chr1 22129860 22129879 -260063785 + MIR3 SINE MIR 144 162 -46 2259 63 0 7 chr1 22129880 22130197 -260063467 - AluY SINE Alu 0 315 1 1311 179 0 105 chr1 22130205 22130382 -260063282 - AluY SINE Alu -21 290 161 369 0 0 0 chr1 22130382 22130423 -260063241 + (TG)n Simple_repeat Simple_repeat 1 41 0 1311 179 0 105 chr1 22130423 22130569 -260063095 - AluY SINE Alu -150 161 1 28 29 0 0 chr1 22130569 22130604 -260063060 + AT_rich Low_complexity Low_complexity 1 35 0 856 159 99 7 chr1 22130618 22130769 -260062895 - AluJb SINE Alu -19 293 129 212 325 104 0 chr1 22131125 22131202 -260062462 + L2 LINE L2 3188 3272 0 568 254 101 0 chr1 22131732 22131870 -260061794 + MLT1J2 LTR MaLR 25 176 -274 1147 160 80 9 chr1 22131881 22132093 -260061571 + AluJo SINE Alu 85 311 -1 552 225 122 10 chr1 22132120 22132323 -260061341 + MLT1J1 LTR MaLR 224 450 0 1363 262 73 67 chr1 22132324 22132791 -260060873 + MLT1K LTR MaLR 45 517 -71 2133 95 0 14 chr1 22132791 22133086 -260060578 + AluSg SINE Alu 1 291 -19 1363 262 73 67 chr1 22133086 22133152 -260060512 + MLT1K LTR MaLR 517 581 -7 301 270 54 103 chr1 22133662 22133866 -260059798 + MIR SINE MIR 36 229 -33 1835 115 0 0 chr1 22134715 22134968 -260058696 + AluSq SINE Alu 1 253 -60 791 154 0 0 chr1 22135165 22135282 -260058382 - FLAM_C SINE Alu -25 118 2 36 23 0 0 chr1 22135344 22135387 -260058277 + GC_rich Low_complexity Low_complexity 1 43 0 251 111 0 19 chr1 22135448 22135502 -260058162 + (TCC)n Simple_repeat Simple_repeat 3 55 0 200 195 0 24 chr1 22136777 22136818 -260056846 + C-rich Low_complexity Low_complexity 4 43 0 214 303 50 30 chr1 22137493 22137592 -260056072 - MIR SINE MIR -154 108 8 1663 169 32 35 chr1 22138586 22138780 -260054884 - AluJb SINE Alu 0 312 118 2612 57 3 0 chr1 22138780 22139080 -260054584 + AluSp SINE Alu 1 301 -12 1663 169 32 35 chr1 22139080 22139198 -260054466 - AluJb SINE Alu -194 118 1 2037 153 0 0 chr1 22139303 22139598 -260054066 - AluSx SINE Alu -17 295 1 2107 126 8 70 chr1 22139946 22140076 -260053588 - MER1B DNA MER1_type -2373 337 201 2349 109 3 0 chr1 22140076 22140378 -260053286 - AluSx SINE Alu -9 303 1 2107 126 8 70 chr1 22140378 22140605 -260053059 - MER1B DNA MER1_type -2509 201 2 1414 239 98 70 chr1 22140860 22140980 -260052684 - HAL1 LINE L1 -30 2477 2362 2191 99 35 0 chr1 22140980 22141264 -260052400 - AluSx SINE Alu -18 294 1 1414 239 98 70 chr1 22141264 22141452 -260052212 - HAL1 LINE L1 -145 2362 2181 2501 67 0 13 chr1 22141452 22141764 -260051900 - AluY SINE Alu -3 308 1 1414 239 98 70 chr1 22141764 22141944 -260051720 - HAL1 LINE L1 -326 2181 2008 2534 73 0 13 chr1 22141944 22142258 -260051406 + AluY SINE Alu 2 311 0 1414 239 98 70 chr1 22142258 22142604 -260051060 - HAL1 LINE L1 -499 2008 1673 2275 114 133 0 chr1 22142604 22142980 -260050684 - MSTA LTR MaLR 0 428 3 1414 239 98 70 chr1 22142980 22143542 -260050122 - HAL1 LINE L1 -834 1673 963 4486 139 76 21 chr1 22143560 22144034 -260049630 - L1MB2 LINE L1 -1 6170 5724 2354 81 0 7 chr1 22144034 22144329 -260049335 + AluSq SINE Alu 4 296 -17 4486 139 76 21 chr1 22144329 22144753 -260048911 - L1MB2 LINE L1 -447 5724 5225 1734 168 31 7 chr1 22144753 22145039 -260048625 - AluSx SINE Alu -19 293 1 2290 80 10 3 chr1 22145121 22145410 -260048254 + AluSx SINE Alu 1 291 -21 228 192 110 14 chr1 22145444 22145517 -260048147 - HAL1 LINE L1 -1637 870 791 655 296 91 66 chr1 22145628 22146070 -260047594 - HAL1 LINE L1 -1838 669 217 1051 148 131 48 chr1 22146349 22146629 -260047035 + MER21A LTR ERV1 1 386 -545 1778 138 0 0 chr1 22146629 22146883 -260046781 + AluSx SINE Alu 55 308 -4 1051 148 131 48 chr1 22146883 22146961 -260046703 + MER21A LTR ERV1 386 456 -475 2393 91 3 3 chr1 22147127 22147435 -260046229 + AluSg SINE Alu 1 308 -2 797 267 100 46 chr1 22147630 22148019 -260045645 - L2 LINE L2 -6 3307 2898 789 171 0 0 chr1 22148165 22148288 -260045376 + FRAM SINE Alu 40 162 -14 405 288 174 0 chr1 22148354 22148486 -260045178 + MIR3 SINE MIR 36 190 -18 2327 72 10 7 chr1 22148685 22148975 -260044689 + AluSx SINE Alu 1 291 -21 228 192 110 14 chr1 22149009 22149082 -260044582 - HAL1 LINE L1 -1637 870 791 261 304 109 41 chr1 22149193 22149561 -260044103 - HAL1 LINE L1 -1838 669 277 2502 135 107 58 chr1 22149912 22150192 -260043472 + MER21A LTR ERV1 1 266 -665 1807 132 0 0 chr1 22150192 22150443 -260043221 + AluSx SINE Alu 55 305 -7 2502 135 107 58 chr1 22150443 22150953 -260042711 + MER21A LTR ERV1 266 907 -24 1539 127 75 34 chr1 22151116 22151383 -260042281 - AluJb SINE Alu -24 288 11 2505 227 11 4 chr1 22151472 22152005 -260041659 + MLT1F LTR MaLR 1 537 -5 631 292 87 73 chr1 22152018 22152504 -260041160 + L2 LINE L2 2785 3271 -1 1341 109 55 9 chr1 22152569 22152789 -260040875 - MER30 DNA MER1_type 0 230 1 381 43 0 0 chr1 22153125 22153172 -260040492 + (TG)n Simple_repeat Simple_repeat 1 47 0 730 216 30 6 chr1 22153313 22153520 -260040144 - MIR SINE MIR 0 262 52 1695 147 102 0 chr1 22153971 22154236 -260039428 - AluJb SINE Alu -20 292 1 419 242 75 8 chr1 22154334 22154454 -260039210 - L2 LINE L2 -3 3310 3183 2089 117 19 13 chr1 22154491 22154662 -260039002 - AluSx SINE Alu -3 309 134 2444 78 0 0 chr1 22154662 22154976 -260038688 - AluY SINE Alu 0 311 1 2089 117 19 13 chr1 22154976 22155111 -260038553 - AluSx SINE Alu -178 134 1 755 205 62 25 chr1 22155272 22155490 -260038174 - MLT1F1 LTR MaLR 0 587 357 2127 102 53 0 chr1 22155490 22155774 -260037890 - AluSx SINE Alu -13 299 1 502 217 232 20 chr1 22155774 22155972 -260037692 + L2 LINE L2 791 1030 -2284 1730 194 48 66 chr1 22155990 22156409 -260037255 - MLT1D LTR MaLR 0 505 125 636 132 142 9 chr1 22156409 22156515 -260037149 - FLAM_A SINE Alu -13 120 1 1730 194 48 66 chr1 22156515 22156627 -260037037 - MLT1D LTR MaLR -380 125 13 2600 272 155 32 chr1 22156628 22157752 -260035912 + L2 LINE L2 1075 2336 -978 1001 178 0 6 chr1 22157755 22157918 -260035746 + AluJo SINE Alu 122 283 -29 871 302 58 63 chr1 22157949 22158171 -260035493 + L2 LINE L2 2411 2633 -680 3489 89 16 0 chr1 22158171 22158622 -260035042 - LTR22A LTR ERVK 0 458 1 871 302 58 63 chr1 22158622 22159140 -260034524 + L2 LINE L2 2633 3143 -170 1154 136 58 66 chr1 22159140 22159260 -260034404 - MLT1D LTR MaLR 0 505 386 2207 79 14 24 chr1 22159260 22159550 -260034114 - AluSx SINE Alu -13 299 13 1154 136 58 66 chr1 22159550 22159561 -260034103 - MLT1D LTR MaLR -119 386 376 1835 172 0 13 chr1 22159561 22159864 -260033800 - AluJo SINE Alu -13 299 1 1154 136 58 66 chr1 22159864 22159989 -260033675 - MLT1D LTR MaLR -129 376 250 955 166 7 0 chr1 22160043 22160194 -260033470 + FRAM SINE Alu 1 152 -24 693 179 0 26 chr1 22160224 22160341 -260033323 - FLAM_A SINE Alu -16 117 4 1087 158 15 15 chr1 22160342 22160538 -260033126 - MLT1D LTR MaLR -309 196 1 840 144 0 0 chr1 22160602 22160720 -260032944 - FLAM_C SINE Alu -25 118 1 301 211 0 42 chr1 22160771 22160842 -260032822 + L2 LINE L2 3241 3308 -5 288 341 61 30 chr1 22161694 22161826 -260031838 - L2 LINE L2 -5 3308 3173 275 305 66 0 chr1 22162053 22162204 -260031460 + MER104 DNA Tc2 19 179 -1 333 278 166 30 chr1 22162390 22162559 -260031105 + MIR SINE MIR 12 203 -59 * 772 252 24 19 chr1 22162538 22162744 -260030920 - L2 LINE L2 0 3313 3107 1558 230 100 46 chr1 22162781 22163067 -260030597 - MLT1J LTR MaLR -2 509 184 2208 102 3 0 chr1 22163067 22163375 -260030289 + AluSp SINE Alu 1 309 0 1558 230 100 46 chr1 22163375 22163566 -260030098 - MLT1J LTR MaLR -327 184 5 2370 109 3 0 chr1 22164180 22164491 -260029173 - AluSx SINE Alu 0 312 1 309 224 63 69 chr1 22164948 22165122 -260028542 + MLT1K LTR MaLR 378 550 -38 357 256 263 0 chr1 22165129 22165262 -260028402 + MER96 DNA MER1_type? 8 175 0 2399 99 3 6 chr1 22166322 22166636 -260027028 + AluSq SINE Alu 1 313 0 479 294 23 11 chr1 22167011 22167188 -260026476 + MLT1K LTR MaLR 147 325 -263 272 208 154 87 chr1 22167248 22167397 -260026267 + MLT1K LTR MaLR 419 577 -11 2420 33 0 4 chr1 22167402 22167705 -260025959 + AluY SINE Alu 8 309 0 592 200 8 15 chr1 22168019 22168149 -260025515 - MLT1L LTR MaLR -354 261 133 184 324 93 7 chr1 22168191 22168330 -260025334 + L2 LINE L2 1614 1764 -1550 392 314 33 8 chr1 22168479 22168600 -260025064 + L3 LINE CR1 1410 1533 -44 260 220 186 0 chr1 22168610 22168669 -260024995 - L2 LINE L2 0 3313 3244 191 333 42 33 chr1 22168743 22168863 -260024801 - MIR SINE MIR -60 202 82 2397 83 3 16 chr1 22168941 22169254 -260024410 + AluSx SINE Alu 1 309 -3 457 289 31 31 chr1 22169261 22169420 -260024244 - MIR3 SINE MIR -25 183 25 408 211 81 32 chr1 22170151 22170274 -260023390 + MIR SINE MIR 102 230 -32 1018 178 5 13 chr1 22170288 22170305 -260023359 + L1M4 LINE L1 4974 4990 -1156 2659 53 0 0 chr1 22170305 22170606 -260023058 - AluY SINE Alu -10 301 1 1018 178 5 13 chr1 22170606 22170823 -260022841 + L1M4 LINE L1 4990 5201 -945 565 106 0 12 chr1 22170863 22170948 -260022716 - LTR8 LTR ERV1 -105 586 503 448 296 31 31 chr1 22171071 22171230 -260022434 + MIR3 SINE MIR 25 183 -25 1904 105 4 16 chr1 22171237 22171494 -260022170 - AluSx SINE Alu -12 300 47 4443 40 54 15 chr1 22171494 22172090 -260021574 + HUERS-P1 LTR ERV1 5645 6263 0 3681 74 2 12 chr1 22172090 22172589 -260021075 + LTR8 LTR ERV1 1 494 -197 13154 48 42 65 chr1 22172589 22173259 -260020405 - HUERS-P1 LTR ERV1 -1926 4337 3653 2199 104 31 0 chr1 22173259 22173547 -260020117 - AluSx SINE Alu -15 297 1 2363 88 3 0 chr1 22173553 22173847 -260019817 - AluSq SINE Alu -18 295 1 13154 48 42 65 chr1 22173847 22174041 -260019623 - HUERS-P1 LTR ERV1 -2615 3648 3451 2112 101 35 0 chr1 22174041 22174327 -260019337 - AluSx SINE Alu -12 300 5 13154 48 42 65 chr1 22174327 22175108 -260018556 - HUERS-P1 LTR ERV1 -2812 3451 2653 2509 87 0 0 chr1 22175108 22175420 -260018244 - AluSx SINE Alu 0 312 1 13154 48 42 65 chr1 22175420 22175457 -260018207 - HUERS-P1 LTR ERV1 -3610 2653 2617 2209 91 25 7 chr1 22175457 22175742 -260017922 - AluSq SINE Alu -23 290 1 13154 48 42 65 chr1 22175742 22176064 -260017600 - HUERS-P1 LTR ERV1 -3646 2617 2368 2300 101 7 0 chr1 22176064 22176372 -260017292 - AluSp SINE Alu -3 310 1 13154 48 42 65 chr1 22176372 22176397 -260017267 - HUERS-P1 LTR ERV1 -3895 2368 2344 256 125 0 21 chr1 22176497 22176545 -260017119 + (TCCCC)n Simple_repeat Simple_repeat 1 47 0 1566 196 43 7 chr1 22176545 22176826 -260016838 - AluJo SINE Alu -21 291 1 2097 155 7 0 chr1 22177889 22178199 -260015465 - AluSx SINE Alu 0 312 1 607 294 21 0 chr1 22178686 22178873 -260014791 + MIR SINE MIR 66 256 -6 2324 86 0 0 chr1 22179001 22179336 -260014328 - AluSg SINE Alu 0 335 1 1057 264 122 31 chr1 22179338 22179807 -260013857 + L2 LINE L2 2779 3266 -47 1553 179 86 24 chr1 22179832 22180166 -260013498 + MLT1A2 LTR MaLR 4 358 -16 906 175 123 115 chr1 22180166 22180515 -260013149 - MSTD LTR MaLR 0 396 45 237 135 0 0 chr1 22180589 22180626 -260013038 - MSTD LTR MaLR -391 37 1 205 205 0 0 chr1 22180763 22180802 -260012862 + A-rich Low_complexity Low_complexity 1 39 0 379 323 31 0 chr1 22181036 22181163 -260012501 - MIR SINE MIR -14 248 118 2192 90 31 7 chr1 22181217 22181506 -260012158 - AluY SINE Alu -15 296 1 2025 161 0 3 chr1 22181611 22181916 -260011748 + AluJb SINE Alu 1 304 -8 196 160 20 80 chr1 22182037 22182087 -260011577 - MER5A DNA MER1_type 0 189 143 556 149 9 28 chr1 22182098 22182205 -260011459 - FLAM_A SINE Alu -4 138 34 667 196 27 34 chr1 22182205 22182353 -260011311 - MER5A DNA MER1_type -40 149 3 2450 81 0 13 chr1 22182512 22182810 -260010854 - AluSq SINE Alu -19 294 1 1517 118 9 22 chr1 22182810 22183038 -260010626 - AluJb SINE Alu -10 302 78 2403 103 0 3 chr1 22183855 22184167 -260009497 - AluSx SINE Alu -1 311 1 1863 176 7 3 chr1 22184798 22185104 -260008560 + AluJo SINE Alu 1 307 -5 1981 161 3 3 chr1 22185551 22185862 -260007802 - AluJo SINE Alu -1 311 1 262 323 20 10 chr1 22185973 22186072 -260007592 - L2 LINE L2 0 3272 3173 244 261 0 15 chr1 22186305 22186370 -260007294 - MIR SINE MIR -25 237 174 2288 88 27 0 chr1 22186537 22186833 -260006831 + AluSx SINE Alu 1 304 -8 250 304 65 11 chr1 22186856 22186948 -260006716 - MIR SINE MIR -137 125 29 511 252 0 0 chr1 22187113 22187216 -260006448 + L2 LINE L2 3205 3307 -6 2523 68 0 7 chr1 22187305 22187615 -260006049 - AluY SINE Alu -3 308 1 454 289 20 85 chr1 22187870 22188071 -260005593 - L2 LINE L2 0 3272 3085 249 310 45 39 chr1 22188316 22188471 -260005193 + MIR SINE MIR 21 176 -86 367 283 102 17 chr1 22188857 22189063 -260004601 + MIR3 SINE MIR 4 231 -31 401 145 224 0 chr1 22190103 22190179 -260003485 + AluJ/FLAM SINE Alu 2 94 -218 1935 132 0 7 chr1 22190119 22190392 -260003272 + AluJo SINE Alu 35 305 -7 408 306 2 0 chr1 22190478 22190604 -260003060 + MIR SINE MIR 34 160 -75 609 321 0 16 chr1 22190626 22190819 -260002845 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 22191488 22191533 -260002131 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 2020 129 7 7 chr1 22191714 22192008 -260001656 - AluSx SINE Alu -18 294 1 2167 95 3 11 chr1 22192297 22192607 -260001057 - AluSx SINE Alu 0 308 1 196 311 14 0 chr1 22192803 22192877 -260000787 + L2 LINE L2 2858 2932 -381 249 264 0 110 chr1 22193001 22193092 -260000572 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 22193207 22193330 -260000334 + (CA)n Simple_repeat Simple_repeat 2 128 0 269 312 28 18 chr1 22193330 22193439 -260000225 + L2 LINE L2 3189 3298 -15 1133 155 80 5 chr1 22193440 22193640 -260000024 + AluJb SINE Alu 85 299 -13 219 314 0 0 chr1 22194100 22194170 -259999494 - MIR3 SINE MIR -54 154 85 2423 109 0 0 chr1 22194488 22194792 -259998872 + AluSx SINE Alu 1 304 -8 384 297 30 35 chr1 22195064 22195266 -259998398 - MIR SINE MIR -3 259 59 223 274 27 0 chr1 22195467 22195540 -259998124 - MIR SINE MIR -115 147 73 231 281 8 25 chr1 22196515 22196636 -259997028 + L2 LINE L2 2871 2989 -283 208 267 0 0 chr1 22197040 22197085 -259996579 - MIR SINE MIR -110 152 108 241 118 294 15 chr1 22197505 22197573 -259996091 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 22197588 22197634 -259996030 + (CA)n Simple_repeat Simple_repeat 2 48 0 2302 100 0 17 chr1 22197676 22197976 -259995688 - AluSx SINE Alu -17 295 1 2516 73 0 10 chr1 22199150 22199464 -259994200 - AluY SINE Alu 0 311 1 195 37 0 0 chr1 22199587 22199614 -259994050 + L2 LINE L2 3028 3054 -218 211 325 102 30 chr1 22200159 22200325 -259993339 + MIR SINE MIR 70 247 -15 2144 141 0 25 chr1 22200484 22200804 -259992860 + AluSx SINE Alu 1 312 0 982 200 11 0 chr1 22201008 22201193 -259992471 + MIR SINE MIR 2 188 -74 1115 133 13 0 chr1 22201633 22201791 -259991873 - FRAM SINE Alu -8 168 9 2579 51 0 3 chr1 22201806 22202101 -259991563 - AluY SINE Alu -17 294 1 2025 161 0 3 chr1 22202206 22202511 -259991153 + AluJb SINE Alu 1 304 -8 518 149 9 28 chr1 22202693 22202800 -259990864 - FLAM_A SINE Alu -4 138 34 616 196 27 34 chr1 22202800 22202948 -259990716 - MER5A DNA MER1_type -40 149 3 2460 81 0 13 chr1 22203106 22203404 -259990260 - AluSq SINE Alu -19 294 1 1526 118 9 22 chr1 22203404 22203632 -259990032 - AluJb SINE Alu -10 302 78 2412 103 0 3 chr1 22204449 22204761 -259988903 - AluSx SINE Alu -1 311 1 1874 176 7 3 chr1 22205392 22205698 -259987966 + AluJo SINE Alu 1 307 -5 1988 161 3 3 chr1 22206145 22206456 -259987208 - AluJo SINE Alu -1 311 1 245 323 20 10 chr1 22206567 22206666 -259986998 - L2 LINE L2 0 3272 3173 229 321 0 12 chr1 22206880 22206964 -259986700 - MIR SINE MIR -6 256 174 2298 88 27 0 chr1 22207131 22207427 -259986237 + AluSx SINE Alu 1 304 -8 237 327 59 10 chr1 22207441 22207542 -259986122 - MIR SINE MIR -128 134 29 487 252 0 0 chr1 22207707 22207810 -259985854 + L2 LINE L2 3205 3307 -6 2540 68 0 7 chr1 22207899 22208209 -259985455 - AluY SINE Alu -3 308 1 407 289 20 85 chr1 22208464 22208665 -259984999 - L2 LINE L2 0 3272 3085 217 310 45 39 chr1 22208910 22209065 -259984599 + MIR SINE MIR 21 176 -86 335 265 98 23 chr1 22209451 22209583 -259984081 + MIR3 SINE MIR 4 145 -63 1935 132 0 7 chr1 22210713 22210986 -259982678 + AluJo SINE Alu 35 305 -7 408 306 2 0 chr1 22211072 22211198 -259982466 + MIR SINE MIR 34 160 -75 609 321 0 16 chr1 22211220 22211413 -259982251 + MIR SINE MIR 20 209 -53 203 244 0 0 chr1 22212083 22212128 -259981536 + (CCCTG)n Simple_repeat Simple_repeat 1 45 0 1966 126 10 10 chr1 22212309 22212603 -259981061 - AluSx SINE Alu -18 294 1 1803 181 23 16 chr1 22212758 22213068 -259980596 + AluJo SINE Alu 1 312 0 487 283 40 0 chr1 22213312 22213464 -259980200 - MIR SINE MIR 0 262 105 1759 158 14 11 chr1 22213485 22213764 -259979900 + AluJo SINE Alu 1 280 -32 369 0 0 0 chr1 22213764 22213805 -259979859 + (TAA)n Simple_repeat Simple_repeat 1 41 0 277 276 112 33 chr1 22213876 22214028 -259979636 + MIR SINE MIR 2 165 -97 740 276 79 21 chr1 22214145 22214475 -259979189 + MLT1K LTR MaLR 210 558 -30 412 284 0 0 chr1 22214501 22214596 -259979068 + MIR SINE MIR 160 254 -8 362 289 61 0 chr1 22214615 22214729 -259978935 - L2 LINE L2 -36 3236 3116 2286 98 0 28 chr1 22214853 22215171 -259978493 - AluSg SINE Alu -1 309 1 330 220 42 25 chr1 22215430 22215441 -259978223 + L1M LINE L1 5256 5265 -2777 2611 42 0 16 chr1 22215441 22215749 -259977915 - AluY SINE Alu -7 304 2 330 220 42 25 chr1 22215749 22215855 -259977809 + L1M LINE L1 5265 5375 -2667 1988 154 0 10 chr1 22215981 22216292 -259977372 + AluJb SINE Alu 1 308 -4 588 330 74 24 chr1 22216325 22216741 -259976923 + L1ME LINE L1 5255 5698 -464 1967 155 0 16 chr1 22216754 22217071 -259976593 - AluSx SINE Alu 0 312 1 761 273 15 25 chr1 22217074 22217467 -259976197 - L1M4 LINE L1 -1107 5039 4609 845 146 16 0 chr1 22217594 22217717 -259975947 + FLAM_C SINE Alu 1 125 -18 322 254 36 42 chr1 22217755 22217920 -259975744 - L1M4 LINE L1 -2658 3488 3325 * 470 299 27 58 chr1 22217908 22218076 -259975588 - L1M4 LINE L1 -3381 2765 2593 2490 60 0 3 chr1 22218076 22218377 -259975287 + AluY SINE Alu 1 300 -11 470 299 27 58 chr1 22218377 22218653 -259975011 - L1M4 LINE L1 -3553 2593 2335 417 214 118 56 chr1 22218674 22218739 -259974925 - Charlie4 DNA MER1_type -1 1960 1900 2180 138 0 13 chr1 22218739 22219051 -259974613 - AluSx SINE Alu -4 308 1 2276 93 0 0 chr1 22219060 22219364 -259974300 - AluSg SINE Alu 0 304 1 417 214 118 56 chr1 22219364 22219464 -259974200 - Charlie4 DNA MER1_type -68 1893 1772 2119 144 0 0 chr1 22219464 22219763 -259973901 - AluSx SINE Alu -13 299 1 277 361 68 5 chr1 22220501 22220692 -259972972 + LTR67 LTR ERVL 352 554 -3 1951 154 7 0 chr1 22221083 22221394 -259972270 + AluJb SINE Alu 1 313 0 2306 66 45 0 chr1 22221407 22221694 -259971970 + AluY SINE Alu 1 300 -11 1053 243 37 90 chr1 22221838 22221957 -259971707 - L2 LINE L2 0 3313 3189 2362 112 3 0 chr1 22221957 22222262 -259971402 - AluSx SINE Alu -6 306 1 1053 243 37 90 chr1 22222262 22222574 -259971090 - L2 LINE L2 -124 3189 2905 1873 94 134 7 chr1 22222654 22222929 -259970735 + AluY SINE Alu 1 310 -1 1340 112 0 0 chr1 22223082 22223251 -259970413 - AluSx SINE Alu -143 169 1 182 293 26 43 chr1 22223975 22224091 -259969573 - L3 LINE CR1 -341 1236 1123 * 439 228 148 0 chr1 22224088 22224237 -259969427 + L2 LINE L2 2909 3079 -193 239 316 53 0 chr1 22224364 22224459 -259969205 - L2 LINE L2 -250 3022 2923 185 207 17 69 chr1 22224596 22224654 -259969010 - L2 LINE L2 -233 3080 3026 292 87 0 0 chr1 22224820 22224926 -259968738 - Alu SINE Alu 0 362 257 587 146 23 11 chr1 22225038 22225215 -259968449 + CT-rich Low_complexity Low_complexity 1 179 0 617 192 24 0 chr1 22225219 22225344 -259968320 - FRAM SINE Alu -11 165 38 1074 283 76 43 chr1 22225352 22225864 -259967800 + L2 LINE L2 2005 2533 -781 277 114 0 0 chr1 22225874 22225918 -259967746 + L1P5 LINE L1 5748 5791 -360 309 258 34 45 chr1 22225919 22226008 -259967656 + L1MC4 LINE L1 6614 6701 -1341 2562 52 43 22 chr1 22226008 22226377 -259967287 + L1PB1 LINE L1 5774 6150 -1 392 339 203 10 chr1 22226388 22227027 -259966637 + L2 LINE L2 2531 3296 -17 234 340 20 0 chr1 22227400 22227500 -259966164 - MIR SINE MIR 0 262 161 888 235 161 37 chr1 22227503 22227907 -259965757 - MLT1H LTR MaLR 0 549 96 2528 80 0 0 chr1 22227965 22228276 -259965388 - AluY SINE Alu 0 311 1 345 243 39 0 chr1 22228277 22228380 -259965284 - MIR SINE MIR -97 165 59 247 208 0 0 chr1 22228554 22228602 -259965062 + MIR SINE MIR 97 144 -118 2202 125 0 10 chr1 22228655 22228959 -259964705 + AluSx SINE Alu 1 301 -11 573 229 19 32 chr1 22228975 22229132 -259964532 + L2 LINE L2 3159 3313 0 1031 181 108 77 chr1 22229325 22229650 -259964014 - MLT1J2 LTR MaLR -113 337 3 481 278 21 98 chr1 22229726 22229960 -259963704 + L2 LINE L2 3094 3309 -4 2513 132 45 22 chr1 22229960 22230424 -259963240 - L1M1 LINE L1 -561 5739 5265 1720 117 0 0 chr1 22230424 22230654 -259963010 + AluSx SINE Alu 64 293 -19 2642 160 13 23 chr1 22230655 22230828 -259962836 + L1MA4 LINE L1 5777 5950 -350 2448 108 0 0 chr1 22230828 22231134 -259962530 + AluSx SINE Alu 1 306 -6 2642 160 13 23 chr1 22231134 22231486 -259962178 + L1MA4 LINE L1 5950 6297 -3 2114 123 7 7 chr1 22231810 22232119 -259961545 + AluSx SINE Alu 1 309 -3 1972 178 0 10 chr1 22232239 22232553 -259961111 - AluJb SINE Alu -1 311 1 253 295 51 0 chr1 22232557 22232635 -259961029 - MIR SINE MIR -61 147 66 2462 88 3 0 chr1 22232980 22233287 -259960377 + AluSg SINE Alu 1 308 -2 695 270 100 46 chr1 22233491 22233880 -259959784 - L2 LINE L2 -6 3307 2898 814 163 0 0 chr1 22234026 22234149 -259959515 + FRAM SINE Alu 40 162 -14 370 288 174 0 chr1 22234215 22234347 -259959317 + MIR3 SINE MIR 36 190 -18 2475 93 0 6 chr1 22234546 22234859 -259958805 + AluSx SINE Alu 1 311 -1 1557 114 9 22 chr1 22235675 22235903 -259957761 + AluJb SINE Alu 78 302 -10 2460 81 0 13 chr1 22235903 22236201 -259957463 + AluSq SINE Alu 1 294 -19 616 196 27 34 chr1 22236360 22236508 -259957156 + MER5A DNA MER1_type 3 149 -40 518 149 9 28 chr1 22236508 22236615 -259957049 + FLAM_A SINE Alu 34 138 -4 2025 161 0 3 chr1 22236797 22237102 -259956562 - AluJb SINE Alu -8 304 1 2202 90 31 7 chr1 22237207 22237496 -259956168 + AluY SINE Alu 1 296 -15 360 323 31 0 chr1 22237550 22237677 -259955987 + MIR SINE MIR 118 248 -14 240 135 0 0 chr1 22238086 22238123 -259955541 + MSTD LTR MaLR 1 37 -391 935 189 112 103 chr1 22238197 22238546 -259955118 + MSTD LTR MaLR 45 396 0 * 1568 179 90 24 chr1 22238546 22238879 -259954785 - MLT1A2 LTR MaLR -16 358 4 951 262 124 32 chr1 22238904 22239372 -259954292 - L2 LINE L2 -47 3266 2779 2221 92 7 0 chr1 22239374 22239737 -259953927 + AluSg SINE Alu 1 365 0 576 294 21 0 chr1 22239865 22240052 -259953612 - MIR SINE MIR -6 256 66 2093 155 7 0 chr1 22240539 22240849 -259952815 + AluSx SINE Alu 1 312 0 1594 192 43 7 chr1 22241911 22242192 -259951472 + AluJo SINE Alu 1 291 -21 387 105 0 0 chr1 22242192 22242249 -259951415 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 299 261 22 92 chr1 22242274 22242458 -259951206 - MLT1J LTR MaLR -50 461 291 2240 120 7 0 chr1 22242483 22242784 -259950880 - AluSg SINE Alu -7 303 1 883 312 66 27 chr1 22243295 22243779 -259949885 - MLT1J LTR MaLR -8 503 1 202 217 0 17 chr1 22244103 22244163 -259949501 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1700 152 62 42 chr1 22244256 22244612 -259949052 - MLT1A1 LTR MaLR 0 365 3 340 256 32 96 chr1 22245181 22245306 -259948358 - L2 LINE L2 0 3313 3197 2546 61 0 3 chr1 22245442 22245738 -259947926 + AluY SINE Alu 1 295 -16 1091 139 13 0 chr1 22245752 22245910 -259947754 + FRAM SINE Alu 9 168 -8 1169 88 0 0 chr1 22246264 22246411 -259947253 + AluYa5 SINE Alu 147 293 -18 408 232 77 88 chr1 22246413 22246594 -259947070 - MIR3 SINE MIR -29 179 1 221 273 133 49 chr1 22248241 22248384 -259945280 + MIR3 SINE MIR 2 156 -52 306 0 0 0 chr1 22248458 22248492 -259945172 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 2012 134 0 0 chr1 22248499 22248774 -259944890 - AluSx SINE Alu -37 275 1 620 244 49 49 chr1 22248840 22249065 -259944599 + MIR SINE MIR 37 262 0 2560 48 0 7 chr1 22249267 22249561 -259944103 + AluY SINE Alu 1 292 -19 190 290 16 16 chr1 22249590 22249652 -259944012 - L2 LINE L2 -493 2821 2760 201 297 161 25 chr1 22249701 22249819 -259943845 + L2 LINE L2 3179 3312 -1 210 118 0 0 chr1 22250107 22250141 -259943523 + (TTGG)n Simple_repeat Simple_repeat 1 34 0 498 203 85 8 chr1 22250147 22250265 -259943399 + L2 LINE L2 3182 3308 -5 236 268 56 0 chr1 22250253 22250324 -259943340 + MIR SINE MIR 172 246 -16 * 183 42 0 0 chr1 22250329 22250353 -259943311 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2304 102 3 0 chr1 22250355 22250649 -259943015 - AluSg SINE Alu -1 309 15 309 284 59 18 chr1 22250848 22251003 -259942661 - MIR SINE MIR -54 208 50 1844 192 0 0 chr1 22251023 22251325 -259942339 + AluJo SINE Alu 2 303 -9 2227 101 0 0 chr1 22251441 22251743 -259941921 - AluSc SINE Alu 0 302 1 194 125 0 0 chr1 22251891 22251923 -259941741 + L2 LINE L2 2916 2947 -325 2108 138 3 3 chr1 22251923 22252227 -259941437 - AluSx SINE Alu -8 304 1 1540 174 91 46 chr1 22252353 22252744 -259940920 + LTR7 LTR ERV1 1 414 -36 2261 71 60 0 chr1 22252744 22253027 -259940637 + AluSg SINE Alu 1 300 -10 1540 174 91 46 chr1 22253027 22253066 -259940598 + LTR7 LTR ERV1 414 450 0 344 278 0 11 chr1 22253069 22253159 -259940505 + MIR SINE MIR 170 258 -4 181 303 11 22 chr1 22253160 22253249 -259940415 + L2 LINE L2 2992 3079 -193 2276 104 0 3 chr1 22253271 22253569 -259940095 - AluSq SINE Alu -16 297 1 605 289 85 82 chr1 22254141 22254408 -259939256 - L2 LINE L2 0 3313 3048 1118 199 9 5 chr1 22254408 22254629 -259939035 + MER58A DNA MER1_type 3 224 0 605 289 85 82 chr1 22254629 22254928 -259938736 - L2 LINE L2 -265 3048 2739 2420 72 0 3 chr1 22254932 22255225 -259938439 - AluSg SINE Alu -18 292 1 344 148 0 0 chr1 22255225 22255286 -259938378 + L1MB3 LINE L1 6113 6173 -10 843 106 8 8 chr1 22255418 22255550 -259938114 + FLAM_C SINE Alu 2 133 0 1823 171 3 0 chr1 22255788 22256074 -259937590 + AluJb SINE Alu 5 291 -21 338 284 53 38 chr1 22256078 22256278 -259937386 - MIR SINE MIR -58 204 3 182 242 45 61 chr1 22257216 22257282 -259936382 - MIR SINE MIR -65 143 79 397 188 0 12 chr1 22257340 22257420 -259936244 + MIR SINE MIR 102 180 -82 2604 84 0 40 chr1 22257444 22257748 -259935916 + THE1B LTR MaLR 1 290 -74 2061 109 0 7 chr1 22257748 22258062 -259935602 - AluSx SINE Alu 0 312 1 2604 84 0 40 chr1 22258062 22258135 -259935529 + THE1B LTR MaLR 290 364 0 448 241 197 31 chr1 22258293 22258507 -259935157 - MIR SINE MIR -24 238 3 269 327 147 5 chr1 22259303 22259491 -259934173 - MIR SINE MIR -27 235 24 552 315 25 15 chr1 22259501 22259698 -259933966 - MIR SINE MIR -24 238 40 2337 97 0 3 chr1 22259698 22259998 -259933666 + AluSx SINE Alu 1 299 -13 2104 121 0 0 chr1 22260630 22260938 -259932726 - AluSg SINE Alu 0 308 1 1187 194 6 118 chr1 22260964 22261294 -259932370 + AluJo SINE Alu 1 293 -9 2182 119 0 26 chr1 22261296 22261608 -259932056 + AluSq SINE Alu 1 304 -9 2336 110 0 0 chr1 22261724 22262025 -259931639 - AluSx SINE Alu -11 301 1 2582 74 0 0 chr1 22262043 22262352 -259931312 - AluY SINE Alu -2 309 1 254 290 226 7 chr1 22262352 22262507 -259931157 - L2 LINE L2 -6 3307 3119 1944 156 0 46 chr1 22262541 22262678 -259930986 + AluJb SINE Alu 1 143 -169 2248 97 4 0 chr1 22262678 22262978 -259930686 + AluSg SINE Alu 1 301 0 1944 156 0 46 chr1 22262978 22263165 -259930499 + AluJb SINE Alu 143 312 0 2629 61 3 0 chr1 22263541 22263851 -259929813 - AluSp SINE Alu -2 311 1 2232 129 0 7 chr1 22263972 22264282 -259929382 + AluSx SINE Alu 1 308 -4 1469 244 106 8 chr1 22264322 22264808 -259928856 - MLT1F1 LTR MaLR -3 564 33 855 195 17 29 chr1 22265012 22265026 -259928638 + AluJo SINE Alu 119 132 -180 738 173 0 23 chr1 22265026 22265159 -259928505 + FLAM_C SINE Alu 1 130 -3 855 195 17 29 chr1 22265159 22265176 -259928488 + AluJo SINE Alu 132 148 -164 3828 139 48 29 chr1 22265176 22265890 -259927774 - LTR8A LTR ERV1 0 727 1 855 195 17 29 chr1 22265890 22266031 -259927633 + AluJo SINE Alu 148 290 -22 1440 44 0 0 chr1 22266031 22266039 -259927625 + (GGAA)n Simple_repeat Simple_repeat 1 188 0 1440 44 0 0 chr1 22266039 22266219 -259927445 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 553 136 8 8 chr1 22266453 22266571 -259927093 + GA-rich Low_complexity Low_complexity 3 120 0 299 286 11 60 chr1 22266574 22266756 -259926908 + HAL1 LINE L1 2333 2505 -2 713 135 8 38 chr1 22266783 22266916 -259926748 + FLAM_C SINE Alu 15 143 0 346 217 35 25 chr1 22267221 22267368 -259926296 - L2 LINE L2 -43 3229 3026 3601 98 3 64 chr1 22268241 22268852 -259924812 + MER4B LTR ERV1 1 574 -36 275 106 0 0 chr1 22269106 22269153 -259924511 + L1MA3 LINE L1 6254 6300 -5 2439 101 0 0 chr1 22269174 22269480 -259924184 + AluSp SINE Alu 1 306 -7 2474 82 8 8 chr1 22269506 22269861 -259923803 - THE1A LTR MaLR 0 355 1 1507 188 44 4 chr1 22269909 22270209 -259923455 + AluJo SINE Alu 1 311 0 2862 199 82 66 chr1 22270887 22271768 -259921896 - MER4D LTR ERV1 -8 895 1 1534 141 38 62 chr1 22271798 22272088 -259921576 - AluJo SINE Alu -21 291 9 23 0 0 0 chr1 22272239 22272262 -259921402 + AT_rich Low_complexity Low_complexity 1 23 0 1339 165 84 60 chr1 22272426 22272477 -259921187 + LTR47A LTR ERVL 2 50 -402 2081 138 16 3 chr1 22272477 22272781 -259920883 - AluSx SINE Alu -4 308 1 1339 165 84 60 chr1 22272781 22273063 -259920601 + LTR47A LTR ERVL 50 343 -109 217 307 53 13 chr1 22273246 22273321 -259920343 + MIR SINE MIR 66 143 -65 231 335 104 9 chr1 22273418 22273597 -259920067 + MIR SINE MIR 38 235 -27 22 0 0 0 chr1 22273764 22273786 -259919878 + GC_rich Low_complexity Low_complexity 1 22 0 228 172 0 35 chr1 22273834 22273892 -259919772 + (CGG)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 22273989 22274014 -259919650 + GC_rich Low_complexity Low_complexity 1 25 0 288 242 168 54 chr1 22274586 22274735 -259918929 - MIR SINE MIR -82 180 15 761 231 60 28 chr1 22274912 22275128 -259918536 - MLT2D LTR ERVL 0 414 192 392 262 78 14 chr1 22275155 22275296 -259918368 - MIR3 SINE MIR -51 157 8 2291 86 0 0 chr1 22275569 22275848 -259917816 + AluSg SINE Alu 1 279 -31 2603 64 0 3 chr1 22275915 22276227 -259917437 + AluY SINE Alu 1 311 0 1596 204 0 0 chr1 22276233 22276497 -259917167 + AluJo SINE Alu 1 264 -48 236 132 61 26 chr1 22276532 22276646 -259917018 + (TA)n Simple_repeat Simple_repeat 1 118 0 2244 98 10 7 chr1 22276693 22276990 -259916674 - AluSg SINE Alu -12 298 1 1806 155 32 36 chr1 22278707 22279016 -259914648 + AluJb SINE Alu 1 308 -4 488 245 0 0 chr1 22279025 22279131 -259914533 - MER5A DNA MER1_type -80 109 4 225 309 154 18 chr1 22280351 22280461 -259913203 + L2 LINE L2 3137 3261 -11 217 301 61 49 chr1 22280834 22280997 -259912667 - L2 LINE L2 -174 3098 2934 1912 118 7 15 chr1 22281116 22281388 -259912276 + AluJb SINE Alu 13 282 -30 189 278 61 26 chr1 22282046 22282161 -259911503 + L2 LINE L2 2799 2917 -397 347 232 107 47 chr1 22282559 22282768 -259910896 - LTR45 LTR ERV1 0 525 264 2049 125 3 3 chr1 22283016 22283304 -259910360 - AluJb SINE Alu -13 299 12 392 277 45 0 chr1 22283770 22283882 -259909782 - L2 LINE L2 0 3272 3156 431 274 44 30 chr1 22283899 22284034 -259909630 + L2 LINE L2 3134 3270 -2 1673 109 68 48 chr1 22284178 22284489 -259909175 - MER44D DNA MER2_type -22 587 1 238 200 0 0 chr1 22284509 22284554 -259909110 - MIR SINE MIR -188 74 30 281 183 0 14 chr1 22284579 22284650 -259909014 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 227 313 15 0 chr1 22284672 22284739 -259908925 + L2 LINE L2 3246 3313 0 2329 104 3 0 chr1 22285555 22285853 -259907811 + AluSx SINE Alu 1 299 -13 1758 150 6 72 chr1 22286340 22286674 -259906990 + AluJo SINE Alu 1 312 0 529 251 27 114 chr1 22286674 22286712 -259906952 + L3 LINE CR1 1346 1386 -191 2399 84 0 0 chr1 22286712 22286999 -259906665 + AluSc SINE Alu 1 287 -22 529 251 27 114 chr1 22286999 22287179 -259906485 + L3 LINE CR1 1386 1545 -32 1957 127 25 0 chr1 22287204 22287395 -259906269 - AluSx SINE Alu 0 324 121 2335 74 0 3 chr1 22287395 22287680 -259905984 - AluY SINE Alu -2 309 26 1957 127 25 0 chr1 22287680 22287805 -259905859 - AluSx SINE Alu -203 121 1 2514 83 0 0 chr1 22287815 22288117 -259905547 - AluSg SINE Alu -8 302 1 1820 115 63 17 chr1 22288169 22288456 -259905208 - AluSx SINE Alu -11 301 2 2212 138 0 0 chr1 22289831 22290135 -259903529 + AluSx SINE Alu 1 304 -8 2180 88 0 3 chr1 22292164 22292475 -259901189 - AluY SINE Alu 0 310 1 2091 126 3 0 chr1 22295210 22295511 -259898153 - AluSx SINE Alu -10 302 1 777 153 23 8 chr1 22295527 22295658 -259898006 - FLAM_C SINE Alu 0 133 1 802 297 169 5 chr1 22297348 22297974 -259895690 - L2 LINE L2 -188 3125 2395 875 198 94 15 chr1 22298231 22298433 -259895231 + MER20 DNA MER1_type 1 218 -1 1654 200 87 78 chr1 22298805 22299192 -259894472 - MER113 DNA MER1_type? 0 521 126 1931 147 3 10 chr1 22299192 22299506 -259894158 - AluJo SINE Alu 0 312 1 1654 200 87 78 chr1 22299506 22299634 -259894030 - MER113 DNA MER1_type? -395 126 1 909 128 7 0 chr1 22300137 22300278 -259893386 + AluJb SINE Alu 163 304 -8 402 307 115 74 chr1 22300362 22300824 -259892840 + L3 LINE CR1 1097 1577 0 2012 98 20 14 chr1 22303293 22303590 -259890074 + AluSx SINE Alu 1 299 -13 437 213 169 15 chr1 22303782 22303918 -259889746 - MIR SINE MIR -20 242 86 462 240 66 8 chr1 22305361 22305482 -259888182 + MIR SINE MIR 23 150 -112 1114 162 0 0 chr1 22305560 22305739 -259887925 - AluSg/x SINE Alu 0 310 132 2202 114 0 3 chr1 22305739 22306047 -259887617 - AluSx SINE Alu -5 307 1 295 197 15 0 chr1 22306396 22306470 -259887194 - MIR SINE MIR -59 149 97 474 292 0 15 chr1 22307251 22307381 -259886283 + MLT1K LTR MaLR 122 249 -339 3751 107 4 13 chr1 22307415 22307949 -259885715 + MER1A DNA MER1_type 1 529 0 422 227 133 94 chr1 22307990 22308072 -259885592 + MLT1K LTR MaLR 338 415 -173 2235 93 0 7 chr1 22308072 22308372 -259885292 + AluSp SINE Alu 1 298 -15 2428 64 0 0 chr1 22308375 22308671 -259884993 + AluY SINE Alu 1 296 -15 422 227 133 94 chr1 22308671 22308787 -259884877 + MLT1K LTR MaLR 416 548 -40 1190 213 43 0 chr1 22309049 22309260 -259884404 + MER58A DNA MER1_type 4 223 -1 2248 67 3 0 chr1 22309602 22309935 -259883729 + AluY SINE Alu 1 334 0 2301 82 20 0 chr1 22309941 22310244 -259883420 + AluSc SINE Alu 1 309 0 343 279 116 8 chr1 22311309 22311438 -259882226 - MIR3 SINE MIR -21 187 45 245 205 189 47 chr1 22311448 22311575 -259882089 + MIR SINE MIR 43 187 -75 540 210 121 94 chr1 22311596 22311674 -259881990 - MIR SINE MIR -1 261 187 1941 135 0 29 chr1 22311674 22311985 -259881679 - AluJb SINE Alu -10 302 1 540 210 121 94 chr1 22311985 22312130 -259881534 - MIR SINE MIR -75 187 32 252 77 0 0 chr1 22312685 22312724 -259880940 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 1839 113 46 7 chr1 22313293 22313606 -259880058 + AluSx SINE Alu 1 312 0 243 0 0 0 chr1 22313728 22313755 -259879909 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 681 188 8 8 chr1 22313759 22313876 -259879788 - FLAM_C SINE Alu -25 118 2 1982 115 17 3 chr1 22313884 22314179 -259879485 - AluSx SINE Alu -13 299 1 1756 180 0 0 chr1 22314273 22314578 -259879086 - AluJo SINE Alu -6 306 2 1461 151 11 22 chr1 22314639 22314910 -259878754 - AluJb SINE Alu -39 273 6 3160 191 12 40 chr1 22314911 22315218 -259878446 - L1M4 LINE L1 -1002 5144 4830 2267 94 0 3 chr1 22315218 22315515 -259878149 + AluSx SINE Alu 1 296 -16 2333 74 0 3 chr1 22315516 22315814 -259877850 + AluY SINE Alu 1 297 -14 3160 191 12 40 chr1 22315814 22316238 -259877426 - L1M4 LINE L1 -1315 4831 4431 1073 127 73 0 chr1 22316242 22316407 -259877257 + AluSg/x SINE Alu 133 309 -1 1828 250 56 67 chr1 22316499 22316900 -259876764 + L1MC4a LINE L1 4997 5401 -745 2123 115 3 3 chr1 22316900 22317224 -259876440 + AluSx SINE Alu 2 312 0 1828 250 56 67 chr1 22317224 22317279 -259876385 + L1MC4a LINE L1 5401 5455 -691 2098 134 0 0 chr1 22317279 22317578 -259876086 + AluJb SINE Alu 1 299 -13 1828 250 56 67 chr1 22317578 22317922 -259875742 + L1MC4a LINE L1 5455 5111 -1035 2132 107 0 7 chr1 22317922 22318221 -259875443 + AluSx SINE Alu 1 297 -15 1828 250 56 67 chr1 22318221 22318331 -259875333 + L1MC4a LINE L1 5110 5220 -926 2276 129 30 28 chr1 22318358 22318721 -259874943 - THE1B LTR MaLR 0 364 1 30 0 0 0 chr1 22318757 22318787 -259874877 + AT_rich Low_complexity Low_complexity 1 30 0 1295 147 34 0 chr1 22319380 22319584 -259874080 + AluJb SINE Alu 1 211 -101 1644 104 0 36 chr1 22319608 22319857 -259873807 + AluJo SINE Alu 70 309 -3 1661 243 22 19 chr1 22319912 22320328 -259873336 + MLT1E2 LTR MaLR 207 623 -3 854 215 0 0 chr1 22320350 22320499 -259873165 - AluSg/x SINE Alu -27 285 137 978 193 25 0 chr1 22320781 22320942 -259872722 + FRAM SINE Alu 1 165 -1 2360 73 0 19 chr1 22321192 22321507 -259872157 + AluY SINE Alu 1 309 -2 2034 95 3 11 chr1 22321532 22321842 -259871822 - AluSx SINE Alu 0 308 1 259 264 0 110 chr1 22322236 22322327 -259871337 + L1ME3A LINE L1 6052 6132 -38 332 219 32 0 chr1 22322442 22322565 -259871099 + (CA)n Simple_repeat Simple_repeat 2 128 0 282 339 18 9 chr1 22322565 22322674 -259870990 + L2 LINE L2 3189 3298 -15 1055 155 80 5 chr1 22322675 22322875 -259870789 + AluJb SINE Alu 85 299 -13 229 314 0 0 chr1 22323335 22323405 -259870259 - MIR3 SINE MIR -54 154 85 2283 109 0 0 chr1 22323723 22324027 -259869637 + AluSx SINE Alu 1 304 -8 182 333 14 0 chr1 22324152 22324221 -259869443 + L2 LINE L2 2898 2967 -305 420 275 41 56 chr1 22324299 22324541 -259869123 - MIR SINE MIR -3 259 24 224 274 27 0 chr1 22324702 22324775 -259868889 - MIR SINE MIR -115 147 73 216 275 193 15 chr1 22325582 22325923 -259867741 + L2 LINE L2 2637 3066 -247 209 267 0 0 chr1 22326275 22326320 -259867344 - MIR SINE MIR -110 152 108 244 118 294 15 chr1 22326740 22326808 -259866856 - MIR SINE MIR -62 146 60 287 65 22 0 chr1 22326823 22326869 -259866795 + (CA)n Simple_repeat Simple_repeat 2 48 0 2167 100 0 17 chr1 22326911 22327211 -259866453 - AluSx SINE Alu -17 295 1 2383 70 0 10 chr1 22328385 22328699 -259864965 - AluY SINE Alu 0 311 1 196 37 0 0 chr1 22328822 22328849 -259864815 + L2 LINE L2 3028 3054 -218 240 325 102 30 chr1 22329394 22329560 -259864104 + MIR SINE MIR 70 247 -15 2012 140 0 28 chr1 22329719 22330040 -259863624 + AluSx SINE Alu 1 312 0 979 205 11 0 chr1 22330244 22330429 -259863235 + MIR SINE MIR 2 188 -74 1645 145 3 85 chr1 22330869 22331041 -259862623 - AluJo SINE Alu -8 304 120 2430 54 0 3 chr1 22331041 22331337 -259862327 - AluY SINE Alu -16 295 1 1645 145 3 85 chr1 22331337 22331369 -259862295 - AluJo SINE Alu -192 120 87 1970 122 30 0 chr1 22331369 22331672 -259861992 + AluSx SINE Alu 1 312 0 1645 145 3 85 chr1 22331672 22331797 -259861867 - AluJo SINE Alu -225 87 1 2069 99 0 48 chr1 22331806 22332119 -259861545 - AluSq SINE Alu -15 298 1 314 283 81 20 chr1 22332129 22332228 -259861436 - L1ME4a LINE L1 -187 5934 5830 288 333 45 40 chr1 22332584 22332692 -259860972 + L2 LINE L2 3001 3112 -201 1272 155 182 35 chr1 22332692 22332950 -259860714 - AluSg SINE Alu -3 297 2 288 333 45 40 chr1 22332950 22333042 -259860622 + L2 LINE L2 3112 3202 -111 2255 103 0 0 chr1 22333121 22333422 -259860242 - AluSg SINE Alu -9 301 1 1695 137 3 68 chr1 22333595 22333916 -259859748 - AluJo SINE Alu -12 300 1 1549 104 0 5 chr1 22334454 22334665 -259858999 - AluSg/x SINE Alu -18 292 83 225 346 78 0 chr1 22335166 22335319 -259858345 + L2 LINE L2 975 1139 -2175 510 248 0 0 chr1 22335342 22335499 -259858165 + (CA)n Simple_repeat Simple_repeat 2 158 0 2245 99 0 3 chr1 22335527 22335839 -259857825 - AluSx SINE Alu -1 311 1 485 252 13 19 chr1 22336069 22336228 -259857436 + L2 LINE L2 1584 1741 -1573 181 254 63 0 chr1 22336216 22336279 -259857385 + L2 LINE L2 3206 3272 0 * 389 233 33 42 chr1 22336345 22336465 -259857199 - MIR SINE MIR -71 191 73 193 206 59 44 chr1 22336466 22336534 -259857130 - MIR3 SINE MIR -13 195 127 190 231 0 0 chr1 22336620 22336659 -259857005 + L2 LINE L2 3258 3296 -17 1729 153 14 4 chr1 22337676 22337988 -259855676 + AluJo SINE Alu 1 315 0 391 269 48 0 chr1 22338505 22338609 -259855055 + MIR SINE MIR 24 132 -76 308 276 149 15 chr1 22338989 22339123 -259854541 - L2 LINE L2 -2 3311 3160 1868 165 3 0 chr1 22339296 22339599 -259854065 - AluJo SINE Alu -8 304 1 1966 114 0 29 chr1 22339625 22339933 -259853731 + AluSx SINE Alu 1 299 -13 1061 299 91 25 chr1 22339997 22340413 -259853251 - L2 LINE L2 -271 3001 2516 1970 102 7 7 chr1 22340413 22340721 -259852943 - AluSx SINE Alu 0 308 1 1061 299 91 25 chr1 22340721 22340940 -259852724 - L2 LINE L2 -756 2516 2313 1424 268 44 19 chr1 22340977 22341454 -259852210 + MER74B LTR ERVL 66 554 -68 2189 96 7 0 chr1 22341502 22341804 -259851860 + AluY SINE Alu 1 304 -7 578 343 108 10 chr1 22341812 22342310 -259851354 - L2 LINE L2 -1058 2256 1710 351 295 20 74 chr1 22342424 22342573 -259851091 - MIR SINE MIR -33 229 89 354 311 31 97 chr1 22343058 22343347 -259850317 + L2 LINE L2 3000 3269 -3 517 217 6 22 chr1 22343376 22343694 -259849970 + (TGGA)n Simple_repeat Simple_repeat 1 312 0 811 159 0 11 chr1 22343733 22343915 -259849749 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 203 294 0 0 chr1 22343915 22343966 -259849698 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 183 288 0 0 chr1 22343975 22344041 -259849623 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 1023 75 0 0 chr1 22344162 22344296 -259849368 + AluY SINE Alu 163 296 -15 624 284 23 28 chr1 22345295 22345513 -259848151 - MIR SINE MIR -13 249 33 200 329 57 36 chr1 22345668 22345808 -259847856 + MIR SINE MIR 31 145 -63 1785 170 182 30 chr1 22345808 22346243 -259847421 + LTR64 LTR ERVK 1 501 -57 2036 123 10 10 chr1 22346244 22346554 -259847110 - AluJo SINE Alu 0 312 3 2178 96 0 0 chr1 22346659 22346960 -259846704 + AluSx SINE Alu 1 301 0 1798 175 19 10 chr1 22346960 22347269 -259846395 + AluJb SINE Alu 1 312 0 965 158 0 34 chr1 22347277 22347454 -259846210 + AluJo SINE Alu 118 288 -24 449 351 16 5 chr1 22347465 22347653 -259846011 + L1ME LINE L1 5548 5737 -384 1763 144 44 3 chr1 22347843 22348132 -259845532 + AluJo SINE Alu 1 304 -8 474 18 0 0 chr1 22348132 22348187 -259845477 + (TG)n Simple_repeat Simple_repeat 2 56 0 239 122 20 0 chr1 22348195 22348244 -259845420 + (TA)n Simple_repeat Simple_repeat 1 50 0 31 26 0 0 chr1 22348247 22348285 -259845379 + AT_rich Low_complexity Low_complexity 1 38 0 774 171 0 16 chr1 22348688 22348817 -259844847 - AluJb SINE Alu -58 254 128 653 242 35 32 chr1 22348947 22349180 -259844484 + MIR SINE MIR 20 256 -6 618 214 184 30 chr1 22349293 22349459 -259844205 + MIR SINE MIR 25 229 -33 1763 150 41 0 chr1 22349459 22349753 -259843911 + AluJb SINE Alu 1 306 -6 618 214 184 30 chr1 22349753 22349787 -259843877 + MIR SINE MIR 229 256 -6 481 302 82 0 chr1 22350364 22350546 -259843118 + MIR SINE MIR 65 261 -1 406 274 131 24 chr1 22351401 22351569 -259842095 + MIR SINE MIR 60 245 -17 501 260 58 35 chr1 22352132 22352305 -259841359 + MIR SINE MIR 16 192 -70 540 186 35 35 chr1 22352764 22352877 -259840787 + FLAM_A SINE Alu 1 113 -29 425 293 72 67 chr1 22352888 22353360 -259840304 - L1MC5 LINE L1 -30 8211 7743 2049 124 0 0 chr1 22353360 22353643 -259840021 - AluSx SINE Alu -26 286 4 425 293 72 67 chr1 22353643 22353664 -259840000 - L1MC5 LINE L1 -498 7743 1853 231 58 19 39 chr1 22354205 22354257 -259839407 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 2077 97 0 35 chr1 22354257 22354396 -259839268 + AluSx SINE Alu 5 147 -165 2369 71 0 0 chr1 22354396 22354691 -259838973 + AluY SINE Alu 1 295 -16 2077 97 0 35 chr1 22354691 22354870 -259838794 + AluSx SINE Alu 147 312 0 2161 119 0 0 chr1 22354871 22355166 -259838498 + AluSx SINE Alu 7 301 -11 295 339 65 0 chr1 22355424 22355548 -259838116 + MIR SINE MIR 117 248 -14 189 250 57 34 chr1 22356191 22356279 -259837385 + MIR SINE MIR 15 104 -158 2113 98 20 3 chr1 22356315 22356612 -259837052 + AluSx SINE Alu 1 302 -10 205 282 28 0 chr1 22356935 22357006 -259836658 - L2 LINE L2 -279 2993 2921 378 183 14 0 chr1 22357139 22357210 -259836454 - L2 LINE L2 -43 3229 3158 1599 58 53 0 chr1 22357408 22357615 -259836049 + AluSq SINE Alu 1 218 -95 224 233 0 27 chr1 22358130 22358203 -259835461 + G-rich Low_complexity Low_complexity 3 73 0 1897 96 100 4 chr1 22358858 22359138 -259834526 + AluSq SINE Alu 1 307 -6 202 333 0 0 chr1 22359252 22359303 -259834361 - L2 LINE L2 -23 3290 3240 1304 151 196 8 chr1 22359414 22359659 -259834005 - AluJo SINE Alu -11 291 1 204 162 68 68 chr1 22362635 22362709 -259830955 + MIR3 SINE MIR 81 154 -54 884 186 0 23 chr1 22363381 22363553 -259830111 + FRAM SINE Alu 1 165 -11 426 312 0 0 chr1 22363717 22363858 -259829806 - MIR SINE MIR -37 225 85 221 329 53 0 chr1 22365176 22365252 -259828412 - L2 LINE L2 -1 3271 3192 514 238 16 25 chr1 22365318 22365440 -259828224 + MIR SINE MIR 13 133 -129 185 250 31 16 chr1 22365602 22365666 -259827998 + L2 LINE L2 3197 3261 -11 276 270 90 0 chr1 22365927 22366027 -259827637 - L2 LINE L2 -244 3028 2920 295 304 53 12 chr1 22366624 22366795 -259826869 + MIR SINE MIR 9 186 -76 238 236 19 57 chr1 22368058 22368164 -259825500 + MIR SINE MIR 32 133 -129 312 290 131 62 chr1 22368502 22368792 -259824872 - L2 LINE L2 -3 3310 3001 295 234 189 9 chr1 22369697 22369803 -259823861 + MIR SINE MIR 27 150 -68 205 360 0 24 chr1 22370512 22370637 -259823027 + G-rich Low_complexity Low_complexity 3 124 0 367 191 38 92 chr1 22371326 22371457 -259822207 - MIR3 SINE MIR -78 130 7 294 242 56 10 chr1 22371676 22371807 -259821857 + MIR SINE MIR 33 172 -62 280 247 27 33 chr1 22372318 22372468 -259821196 + C-rich Low_complexity Low_complexity 2 150 0 360 338 82 34 chr1 22373494 22373701 -259819963 + MIR SINE MIR 46 262 0 229 188 0 21 chr1 22373753 22373801 -259819863 - Alu SINE Alu -13 289 243 324 153 17 35 chr1 22373811 22373904 -259819760 - Alu SINE Alu -17 285 243 1061 145 24 58 chr1 22373918 22374125 -259819539 - AluJb SINE Alu -27 285 86 211 234 16 47 chr1 22374619 22374683 -259818981 - L2 LINE L2 -39 3274 3213 2317 87 3 0 chr1 22374699 22374998 -259818666 + AluSq SINE Alu 1 300 -13 2195 44 4 7 chr1 22375168 22375443 -259818221 + AluY SINE Alu 1 274 -37 1657 138 63 0 chr1 22375443 22375711 -259817953 - AluSx SINE Alu -26 286 1 2455 62 3 0 chr1 22376584 22376888 -259816776 + AluSp SINE Alu 1 305 -8 1297 194 74 7 chr1 22376895 22377178 -259816486 + AluJo SINE Alu 3 304 -8 1753 148 44 75 chr1 22377199 22377584 -259816080 + MLT1B LTR MaLR 18 390 0 726 168 24 8 chr1 22377605 22377730 -259815934 + FLAM_A SINE Alu 1 127 -6 372 176 157 10 chr1 22377830 22377932 -259815732 - MIR3 SINE MIR -15 193 77 374 215 13 0 chr1 22379281 22379360 -259814304 - MIR SINE MIR -120 142 63 1998 135 3 0 chr1 22380191 22380488 -259813176 + AluSx SINE Alu 1 298 -14 1399 207 23 10 chr1 22380888 22381188 -259812476 + AluJo SINE Alu 1 304 -8 236 326 61 20 chr1 22382397 22382495 -259811169 - L3 LINE CR1 -9 1568 1467 23 0 0 0 chr1 22383688 22383711 -259809953 + AT_rich Low_complexity Low_complexity 1 23 0 1975 129 10 3 chr1 22383731 22384040 -259809624 + AluY SINE Alu 1 311 0 2028 97 17 7 chr1 22384135 22384452 -259809212 + AluSx SINE Alu 1 312 0 285 272 0 12 chr1 22386253 22386334 -259807330 - L2 LINE L2 -2 3311 3232 369 0 0 0 chr1 22386536 22386577 -259807087 + (TG)n Simple_repeat Simple_repeat 2 42 0 749 208 0 0 chr1 22386577 22386707 -259806957 - FLAM_A SINE Alu -3 130 1 194 286 0 39 chr1 22386903 22386980 -259806684 + L2 LINE L2 3240 3313 0 1724 159 11 3 chr1 22387098 22387381 -259806283 + AluJb SINE Alu 16 300 -12 1004 239 61 22 chr1 22387560 22387790 -259805874 - MER8 DNA MER2_type 0 239 1 183 80 0 0 chr1 22388198 22388223 -259805441 + (CATA)n Simple_repeat Simple_repeat 3 27 0 799 168 0 0 chr1 22388246 22388365 -259805299 - FLAM_C SINE Alu -23 120 2 266 290 20 20 chr1 22388369 22388469 -259805195 - MIR3 SINE MIR -20 188 89 2001 86 0 58 chr1 22388814 22389127 -259804537 + AluY SINE Alu 1 295 -16 2051 131 0 10 chr1 22389695 22390008 -259803656 - AluSg SINE Alu 0 310 1 1606 143 37 24 chr1 22390563 22390672 -259802992 + AluSx SINE Alu 15 121 -191 513 0 0 0 chr1 22390672 22390729 -259802935 + (CA)n Simple_repeat Simple_repeat 2 58 0 1606 143 37 24 chr1 22390729 22390913 -259802751 + AluSx SINE Alu 121 312 0 2358 153 32 43 chr1 22390965 22391157 -259802507 + Tigger2a DNA MER2_type 2 195 -2513 2055 133 3 0 chr1 22391157 22391466 -259802198 - AluSx SINE Alu -2 310 1 2358 153 32 43 chr1 22391466 22391711 -259801953 + Tigger2a DNA MER2_type 195 434 0 1433 211 10 10 chr1 22391796 22392104 -259801560 + AluJo SINE Alu 5 312 0 3716 209 40 26 chr1 22392226 22392328 -259801336 + Charlie1a DNA MER1_type 2 101 -2660 2042 92 34 7 chr1 22392328 22392621 -259801043 + AluSx SINE Alu 2 302 -10 3716 209 40 26 chr1 22392621 22392633 -259801031 + Charlie1a DNA MER1_type 101 111 -2650 2036 124 16 0 chr1 22392633 22392939 -259800725 - AluSx SINE Alu -1 311 1 3716 209 40 26 chr1 22392939 22393297 -259800367 + Charlie1a DNA MER1_type 111 463 -2298 2280 88 0 7 chr1 22393297 22393591 -259800073 - AluSg SINE Alu -18 292 1 3716 209 40 26 chr1 22393591 22394072 -259799592 + Charlie1a DNA MER1_type 463 970 -485 4623 209 89 26 chr1 22394072 22395380 -259798284 + L1MB7 LINE L1 3841 5230 -916 3008 175 121 30 chr1 22395419 22395635 -259798029 + L1MB7 LINE L1 5301 5496 -688 1865 165 0 23 chr1 22395635 22395938 -259797726 + AluJb SINE Alu 1 296 -16 3008 175 121 30 chr1 22395938 22396520 -259797144 + L1MB7 LINE L1 5496 6172 -12 877 173 127 25 chr1 22396520 22396757 -259796907 + Charlie1a DNA MER1_type 956 1216 -239 825 190 0 0 chr1 22396785 22396927 -259796737 + AluJb SINE Alu 149 290 -22 1065 134 13 92 chr1 22396950 22397058 -259796606 + Charlie1a DNA MER1_type 1236 1316 -1445 1922 141 30 10 chr1 22397058 22397357 -259796307 - AluSx SINE Alu -5 307 3 1065 134 13 92 chr1 22397357 22397486 -259796178 + Charlie1a DNA MER1_type 1316 1454 -1 2383 91 3 0 chr1 22397722 22398020 -259795644 - AluSp SINE Alu -14 299 1 2217 122 0 6 chr1 22398213 22398525 -259795139 + AluSg SINE Alu 1 310 0 235 275 121 33 chr1 22398609 22398700 -259794964 - MIR SINE MIR -10 252 154 2194 106 0 3 chr1 22398702 22398995 -259794669 - AluY SINE Alu -19 292 1 1812 160 3 26 chr1 22398995 22399302 -259794362 - AluJb SINE Alu -12 300 1 355 235 103 15 chr1 22399326 22399462 -259794202 + L1MC5 LINE L1 7526 7673 -288 2234 103 3 10 chr1 22399468 22399769 -259793895 + AluSp SINE Alu 1 299 -14 610 199 34 14 chr1 22399857 22400003 -259793661 + MLT1A1 LTR MaLR 169 317 -48 2475 249 76 62 chr1 22400022 22400230 -259793434 - L2 LINE L2 -252 3061 2857 2383 88 0 16 chr1 22400230 22400535 -259793129 - AluSg SINE Alu -10 300 1 2475 249 76 62 chr1 22400535 22400607 -259793057 - L2 LINE L2 -456 2857 2787 1529 220 3 10 chr1 22400607 22400903 -259792761 + AluJo SINE Alu 3 296 -16 2055 109 25 0 chr1 22400909 22401204 -259792460 + AluSx SINE Alu 1 302 0 2475 249 76 62 chr1 22401204 22401389 -259792275 - L2 LINE L2 -530 2783 2602 2073 127 20 7 chr1 22401389 22401689 -259791975 - AluSx SINE Alu -8 304 1 2475 249 76 62 chr1 22401689 22402413 -259791251 - L2 LINE L2 -711 2602 1787 243 163 0 0 chr1 22402815 22402858 -259790806 + MER4A LTR ERV1 1 43 -621 1891 134 26 19 chr1 22402908 22403260 -259790404 + MER4A LTR ERV1 252 664 0 1357 204 71 34 chr1 22403275 22403599 -259790065 + MSTB LTR MaLR 40 375 -51 226 143 0 36 chr1 22404209 22404265 -259789399 + (TA)n Simple_repeat Simple_repeat 2 55 0 345 82 0 8 chr1 22404266 22404320 -259789344 - Alu SINE Alu -14 287 245 301 79 0 0 chr1 22404304 22404342 -259789322 - Alu SINE Alu -264 38 1 * 1183 114 0 6 chr1 22404701 22404867 -259788797 - AluSq SINE Alu -20 293 129 1066 163 6 0 chr1 22405065 22405237 -259788427 + AluSq SINE Alu 122 294 -19 2196 125 6 0 chr1 22405237 22405548 -259788116 + AluSq SINE Alu 1 313 0 2143 117 20 0 chr1 22406039 22406339 -259787325 + AluSx SINE Alu 1 306 -6 2029 136 3 0 chr1 22406360 22406646 -259787018 + AluSp SINE Alu 1 287 -26 1852 154 0 17 chr1 22407006 22407330 -259786334 + AluSx SINE Alu 1 319 0 1972 117 17 7 chr1 22407387 22407677 -259785987 + AluSx SINE Alu 1 293 -19 226 300 110 50 chr1 22407719 22407819 -259785845 + MIR SINE MIR 18 123 -139 230 209 0 0 chr1 22407832 22407875 -259785789 + L2 LINE L2 3214 3256 -16 225 260 14 41 chr1 22408202 22408275 -259785389 + MIR SINE MIR 80 150 -112 2528 58 0 0 chr1 22408515 22408810 -259784854 + AluY SINE Alu 1 295 -16 1944 143 43 0 chr1 22408908 22409187 -259784477 + AluSx SINE Alu 1 291 -21 1354 143 76 90 chr1 22409443 22409626 -259784038 - AluJo SINE Alu -15 297 118 1891 168 7 0 chr1 22409626 22409935 -259783729 + AluJb SINE Alu 1 311 -1 1354 143 76 90 chr1 22409935 22410052 -259783612 - AluJo SINE Alu -194 118 1 190 296 239 0 chr1 22410303 22410445 -259783219 + MIR3 SINE MIR 33 208 0 1691 166 28 0 chr1 22410681 22410965 -259782699 - AluJo SINE Alu -20 292 1 34 65 0 0 chr1 22413558 22413620 -259780044 + AT_rich Low_complexity Low_complexity 1 62 0 244 308 99 44 chr1 22414275 22414457 -259779207 + MIR SINE MIR 2 193 -69 716 169 0 0 chr1 22414572 22414690 -259778974 + FLAM_C SINE Alu 1 118 -15 261 75 0 0 chr1 22414694 22414734 -259778930 + (CA)n Simple_repeat Simple_repeat 2 41 0 3121 147 48 19 chr1 22414845 22415053 -259778611 + Tigger3b DNA MER2_type 3 204 -2824 2260 89 0 30 chr1 22415053 22415357 -259778307 + AluSc SINE Alu 1 295 -14 3121 147 48 19 chr1 22415357 22415671 -259777993 + Tigger3b DNA MER2_type 204 540 -691 629 261 0 0 chr1 22415671 22415801 -259777863 - FLAM_A SINE Alu -12 130 1 2657 123 43 0 chr1 22415897 22416288 -259777376 + Tigger3b DNA MER2_type 823 1230 -1 33 0 0 0 chr1 22416361 22416394 -259777270 + AT_rich Low_complexity Low_complexity 1 33 0 207 152 0 0 chr1 22417628 22417674 -259775990 + A-rich Low_complexity Low_complexity 1 46 0 2264 104 0 3 chr1 22417800 22418109 -259775555 - AluY SINE Alu -3 308 1 232 256 0 49 chr1 22419040 22419122 -259774542 + MER117 DNA MER1_type 78 155 -42 2250 115 7 0 chr1 22419143 22419447 -259774217 - AluSx SINE Alu -6 306 1 259 247 22 22 chr1 22419540 22419629 -259774035 + A-rich Low_complexity Low_complexity 2 90 0 2356 90 3 0 chr1 22421984 22422283 -259771381 - AluSx SINE Alu -12 300 1 640 227 23 0 chr1 22422518 22422646 -259771018 + AluJo SINE Alu 6 136 -176 1704 167 16 22 chr1 22422659 22422970 -259770694 + AluJb SINE Alu 1 309 -3 2553 75 3 0 chr1 22422978 22423285 -259770379 + AluSg SINE Alu 1 308 -2 887 213 6 0 chr1 22423305 22423492 -259770172 + AluJo SINE Alu 118 305 0 2134 119 10 13 chr1 22423596 22423908 -259769756 + AluSx SINE Alu 1 311 -1 1130 95 0 0 chr1 22424005 22424152 -259769512 + AluSg/x SINE Alu 161 307 -5 1756 169 38 0 chr1 22424337 22424627 -259769037 - AluJb SINE Alu -11 301 1 375 262 10 19 chr1 22424702 22424805 -259768859 + L2 LINE L2 3212 3313 0 2518 56 7 0 chr1 22424827 22425133 -259768531 - AluY SINE Alu -3 308 1 1582 138 89 11 chr1 22425300 22425569 -259768095 - AluJb SINE Alu -22 290 1 21 0 0 0 chr1 22427045 22427066 -259766598 + GC_rich Low_complexity Low_complexity 1 21 0 282 243 28 42 chr1 22427574 22427718 -259765946 + C-rich Low_complexity Low_complexity 2 143 0 25 75 0 0 chr1 22427734 22427787 -259765877 + GC_rich Low_complexity Low_complexity 1 53 0 1561 142 43 25 chr1 22428892 22429173 -259764491 + AluJo SINE Alu 1 286 -26 1336 175 35 45 chr1 22429184 22429325 -259764339 + AluJb SINE Alu 5 146 -166 2180 92 20 7 chr1 22429325 22429619 -259764045 + AluY SINE Alu 1 298 -13 1336 175 35 45 chr1 22429619 22429763 -259763901 + AluJb SINE Alu 146 287 -25 2077 96 58 3 chr1 22429770 22430061 -259763603 + AluSg SINE Alu 1 307 -3 2069 138 3 0 chr1 22430065 22430376 -259763288 + AluSx SINE Alu 1 312 0 2288 105 0 0 chr1 22430738 22431034 -259762630 - AluSx SINE Alu -16 296 1 699 194 16 0 chr1 22431298 22431422 -259762242 - FLAM_A SINE Alu -7 126 1 2131 97 31 3 chr1 22431842 22432132 -259761532 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 22432340 22432365 -259761299 + AT_rich Low_complexity Low_complexity 1 25 0 1566 164 63 4 chr1 22432365 22432633 -259761031 - AluJo SINE Alu -28 284 1 340 173 0 0 chr1 22433147 22433199 -259760465 + MER46C DNA MER2_type 285 336 -2 1444 129 62 0 chr1 22433203 22433444 -259760220 - Tigger7 DNA MER2_type 0 2487 2232 755 142 8 24 chr1 22433445 22433572 -259760092 + AluJb SINE Alu 2 126 -186 309 153 0 34 chr1 22433573 22433632 -259760032 - Tigger7 DNA MER2_type -281 58 2 354 150 133 133 chr1 22434377 22434435 -259759229 + MER81 DNA DNA 2 62 -52 2199 119 7 0 chr1 22434435 22434738 -259758926 - AluSg SINE Alu -5 305 1 354 150 133 133 chr1 22434738 22434792 -259758872 + MER81 DNA DNA 61 114 0 1261 168 0 0 chr1 22434879 22435082 -259758582 + AluSx SINE Alu 1 203 -109 570 99 0 25 chr1 22435082 22435266 -259758398 + AluSx SINE Alu 69 303 0 1275 98 0 0 chr1 22435266 22435430 -259758234 + AluSx SINE Alu 134 297 -15 2351 75 0 3 chr1 22435661 22435954 -259757710 - AluSc SINE Alu -17 292 1 2332 75 0 0 chr1 22436227 22436534 -259757130 - AluY SINE Alu 0 307 1 2574 60 0 16 chr1 22436883 22437198 -259756466 + AluY SINE Alu 2 311 0 2466 81 0 7 chr1 22437271 22437578 -259756086 + AluSx SINE Alu 1 305 -7 266 253 105 11 chr1 22437715 22437810 -259755854 - MIR SINE MIR -37 225 122 1350 165 139 0 chr1 22437810 22438076 -259755588 + AluJb SINE Alu 1 303 -9 645 211 76 23 chr1 22438544 22438715 -259754949 - MER5A DNA MER1_type 0 189 10 402 131 16 0 chr1 22438918 22438979 -259754685 + AluS SINE Alu 1 62 -246 574 182 25 8 chr1 22488979 22489100 -259704564 - AluJb SINE Alu -188 124 2 340 317 33 0 chr1 22489262 22489382 -259704282 + MIR SINE MIR 117 240 -22 1142 204 63 5 chr1 22490681 22490902 -259702762 - AluJo SINE Alu -78 234 1 341 137 0 0 chr1 22490902 22490953 -259702711 - Alu SINE Alu -9 293 243 28 0 0 0 chr1 22490953 22490981 -259702683 + AT_rich Low_complexity Low_complexity 1 28 0 1793 166 26 0 chr1 22491321 22491623 -259702041 - AluJo SINE Alu -2 310 1 6781 20 7 2 chr1 22492206 22493064 -259700600 - L1PA4 LINE L1 -80 6075 5211 2317 90 0 56 chr1 22493603 22493926 -259699738 + AluSx SINE Alu 1 305 -7 1711 168 18 18 chr1 22494217 22494502 -259699162 + AluJo SINE Alu 1 285 -27 1199 131 0 0 chr1 22494647 22494807 -259698857 + AluSg/x SINE Alu 132 291 -21 526 251 42 33 chr1 22495058 22495273 -259698391 + SVA Other Other 649 865 -521 3926 100 31 44 chr1 22495340 22496343 -259697321 + SVA Other Other 433 1426 0 1707 154 45 3 chr1 22496725 22497017 -259696647 - AluJb SINE Alu -8 304 1 1928 150 3 10 chr1 22497400 22497700 -259695964 + AluJb SINE Alu 1 298 -14 698 192 24 0 chr1 22497984 22498109 -259695555 - FLAM_A SINE Alu -5 128 1 31 26 0 0 chr1 22498299 22498337 -259695327 + AT_rich Low_complexity Low_complexity 1 38 0 555 155 0 0 chr1 22498369 22498453 -259695211 - AluJb SINE Alu -20 292 209 518 121 0 147 chr1 22498459 22498594 -259695070 - AluJb SINE Alu 0 312 212 2214 92 7 13 chr1 22498594 22498899 -259694765 + L1PA13 LINE L1 5861 6163 0 518 121 0 147 chr1 22498899 22498912 -259694752 - AluJb SINE Alu -100 212 199 260 113 52 41 chr1 22498912 22499009 -259694655 + GA-rich Low_complexity Low_complexity 1 98 0 6910 118 93 12 chr1 22499015 22500172 -259693492 + MER52C LTR ERV1 28 1278 0 523 295 78 50 chr1 22500278 22500597 -259693067 - L1M4c LINE L1 -6028 356 29 2144 89 4 7 chr1 22500941 22501221 -259692443 - AluSx SINE Alu -33 279 1 2388 69 3 16 chr1 22501293 22501596 -259692068 - AluY SINE Alu -11 300 2 2306 75 0 0 chr1 22501946 22502253 -259691411 + AluY SINE Alu 1 307 0 2271 76 7 3 chr1 22502526 22502817 -259690847 + AluSc SINE Alu 1 292 -17 1261 98 0 0 chr1 22503048 22503212 -259690452 - AluSx SINE Alu -15 297 134 198 0 0 0 chr1 22503212 22503234 -259690430 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 601 122 0 0 chr1 22503234 22503316 -259690348 - AluSx SINE Alu -28 281 200 429 50 0 67 chr1 22503321 22503381 -259690283 - AluSx SINE Alu -173 139 84 1541 142 43 25 chr1 22504333 22504614 -259689050 + AluJo SINE Alu 1 286 -26 1321 175 35 45 chr1 22504625 22504766 -259688898 + AluJb SINE Alu 5 146 -166 2163 92 20 7 chr1 22504766 22505060 -259688604 + AluY SINE Alu 1 298 -13 1321 175 35 45 chr1 22505060 22505204 -259688460 + AluJb SINE Alu 146 287 -25 2046 97 59 3 chr1 22505211 22505501 -259688163 + AluSg SINE Alu 1 306 -4 2052 138 3 0 chr1 22505505 22505816 -259687848 + AluSx SINE Alu 1 312 0 2269 105 0 0 chr1 22506176 22506472 -259687192 - AluSx SINE Alu -16 296 1 750 194 16 0 chr1 22506736 22506860 -259686804 - FLAM_A SINE Alu -7 126 1 2115 97 31 3 chr1 22507280 22507570 -259686094 - AluSx SINE Alu -8 304 7 25 0 0 0 chr1 22507779 22507804 -259685860 + AT_rich Low_complexity Low_complexity 1 25 0 1552 164 63 4 chr1 22507804 22508072 -259685592 - AluJo SINE Alu -28 284 1 343 173 0 0 chr1 22508586 22508638 -259685026 + MER46C DNA MER2_type 285 336 -2 1461 129 62 0 chr1 22508642 22508883 -259684781 - Tigger7 DNA MER2_type 0 2487 2232 805 142 8 24 chr1 22508884 22509011 -259684653 + AluJb SINE Alu 2 126 -186 307 153 0 34 chr1 22509012 22509071 -259684593 - Tigger7 DNA MER2_type -281 58 2 392 150 133 133 chr1 22509816 22509874 -259683790 + MER81 DNA DNA 2 62 -52 2181 119 7 0 chr1 22509874 22510177 -259683487 - AluSg SINE Alu -5 305 1 392 150 133 133 chr1 22510177 22510231 -259683433 + MER81 DNA DNA 61 114 0 439 236 51 32 chr1 22510391 22510548 -259683116 - L1MEd LINE L1 -2787 3342 3183 787 96 0 0 chr1 22510548 22510652 -259683012 - AluSg/x SINE Alu -3 307 204 567 222 189 23 chr1 22510652 22510781 -259682883 - L1MEd LINE L1 -2938 3191 3085 852 163 0 15 chr1 22510781 22510916 -259682748 - FLAM_C SINE Alu 0 133 1 567 222 189 23 chr1 22510916 22511092 -259682572 - L1MEd LINE L1 -3044 3085 2835 434 276 84 41 chr1 22511095 22511510 -259682154 - L1MEd LINE L1 -4756 1554 1080 1565 191 33 3 chr1 22511564 22511867 -259681797 - AluJo SINE Alu 0 312 1 417 310 78 20 chr1 22511951 22512196 -259681468 - L1MEd LINE L1 -5295 824 566 183 129 0 0 chr1 22513431 22513462 -259680202 + (A)n Simple_repeat Simple_repeat 1 31 0 519 208 8 54 chr1 22513521 22513651 -259680013 + FLAM_A SINE Alu 1 124 -9 323 279 51 13 chr1 22514200 22514279 -259679385 - MIR SINE MIR -158 104 23 2193 110 0 0 chr1 22514371 22514653 -259679011 - AluSx SINE Alu -25 287 6 2541 81 0 0 chr1 22514670 22514979 -259678685 - AluSc SINE Alu 0 309 1 2280 113 3 0 chr1 22516221 22516521 -259677143 - AluSc SINE Alu -8 301 1 362 177 9 106 chr1 22516660 22516773 -259676891 + MER103 DNA DNA 24 125 -41 229 382 24 8 chr1 22517695 22517818 -259675846 - L2 LINE L2 -229 3084 2960 31 26 0 0 chr1 22519449 22519487 -259674177 + AT_rich Low_complexity Low_complexity 1 38 0 11555 23 4 1 chr1 22519797 22521843 -259671821 - L1PA2 LINE L1 0 6155 4106 2490 24 0 0 chr1 22521843 22522131 -259671533 + L1PA2 LINE L1 3842 4129 -2017 21 0 0 0 chr1 22522131 22522152 -259671512 + AT_rich Low_complexity Low_complexity 1 21 0 5631 204 81 18 chr1 22522225 22522356 -259671308 + L1M1 LINE L1 3503 3624 -3941 1425 189 57 17 chr1 22522356 22522653 -259671011 + AluJb SINE Alu 1 309 -3 5631 204 81 18 chr1 22522653 22523847 -259669817 + L1M1 LINE L1 3624 4951 -2614 1778 185 10 0 chr1 22523847 22524144 -259669520 + AluJb SINE Alu 1 300 -12 5631 204 81 18 chr1 22524144 22524271 -259669393 + L1M1 LINE L1 4951 5069 -2496 1035 175 0 6 chr1 22524272 22524438 -259669226 - AluJb SINE Alu -113 199 35 1596 195 3 13 chr1 22524438 22524736 -259668928 - AluJo SINE Alu -17 295 1 2299 86 14 0 chr1 22525402 22525693 -259667971 - AluSc SINE Alu -14 295 1 1858 172 14 0 chr1 22526875 22527166 -259666498 - AluJb SINE Alu -17 295 1 2103 101 7 3 chr1 22527177 22527465 -259666199 - AluSg SINE Alu -21 289 1 1086 90 0 0 chr1 22527465 22527598 -259666066 - AluSg SINE Alu -176 134 2 1725 127 80 4 chr1 22527702 22527977 -259665687 - AluSx SINE Alu -16 296 1 280 246 18 0 chr1 22529430 22529487 -259664177 + U7 snRNA snRNA 2 59 -4 28 0 0 0 chr1 22529489 22529517 -259664147 + AT_rich Low_complexity Low_complexity 1 28 0 387 281 85 30 chr1 22530322 22530557 -259663107 - L1MC4 LINE L1 -266 7776 7529 2151 125 7 0 chr1 22530558 22530854 -259662810 - AluSp SINE Alu -15 298 1 366 226 43 0 chr1 22530935 22531028 -259662636 - HAL1 LINE L1 -2309 198 102 1702 164 34 20 chr1 22531033 22531326 -259662338 - AluJo SINE Alu -15 297 1 1990 125 0 3 chr1 22531421 22531731 -259661933 + AluSx SINE Alu 1 309 0 7111 157 32 34 chr1 22531833 22532747 -259660917 - L1PA12 LINE L1 0 6168 5254 2232 81 36 23 chr1 22532747 22533056 -259660608 + AluSq SINE Alu 1 313 0 7111 157 32 34 chr1 22533056 22533568 -259660096 - L1PA12 LINE L1 -914 5254 4743 2364 67 0 0 chr1 22533568 22533890 -259659774 + AluY SINE Alu 1 322 0 7111 157 32 34 chr1 22533890 22534568 -259659096 - L1PA12 LINE L1 -1425 4743 4051 308 259 171 85 chr1 22534609 22534914 -259658750 + L2 LINE L2 2965 3295 -18 471 230 230 29 chr1 22534915 22535124 -259658540 + MIR SINE MIR 6 256 -6 779 318 5 5 chr1 22535252 22535472 -259658192 + MIR SINE MIR 31 250 -12 2071 126 13 3 chr1 22536152 22536453 -259657211 - AluJb SINE Alu -8 304 1 263 298 119 0 chr1 22536670 22536754 -259656910 + L2 LINE L2 3113 3206 -66 227 287 139 28 chr1 22536815 22536923 -259656741 + MIR SINE MIR 65 184 -78 2385 103 3 0 chr1 22536953 22537263 -259656401 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr1 22537736 22537773 -259655891 + AT_rich Low_complexity Low_complexity 1 37 0 535 248 45 19 chr1 22538789 22538946 -259654718 - MIR SINE MIR -1 261 101 1560 135 0 0 chr1 22539927 22540157 -259653507 + AluSq SINE Alu 1 230 -83 2328 75 0 3 chr1 22540333 22540626 -259653038 - AluSc SINE Alu -17 292 1 2305 75 0 0 chr1 22540899 22541206 -259652458 - AluY SINE Alu 0 307 1 2432 69 0 16 chr1 22541556 22541860 -259651804 + AluY SINE Alu 2 300 -11 2525 76 0 6 chr1 22541932 22542246 -259651418 + AluSx SINE Alu 1 312 0 292 253 105 11 chr1 22542388 22542483 -259651181 - MIR SINE MIR -37 225 122 1334 165 139 0 chr1 22542483 22542749 -259650915 + AluJb SINE Alu 1 303 -9 706 211 76 23 chr1 22543217 22543388 -259650276 - MER5A DNA MER1_type 0 189 10 2288 116 7 0 chr1 22543591 22543901 -259649763 + AluSx SINE Alu 1 312 0 704 247 29 29 chr1 22544342 22544394 -259649270 - MER5B DNA MER1_type -7 171 120 180 0 0 0 chr1 22544394 22544414 -259649250 + (GA)n Simple_repeat Simple_repeat 1 20 0 704 247 29 29 chr1 22544414 22544531 -259649133 - MER5B DNA MER1_type -57 121 2 185 338 14 28 chr1 22544894 22544965 -259648699 - MIR3 SINE MIR -130 78 9 617 124 0 41 chr1 22545131 22545228 -259648436 - FRAM SINE Alu -19 157 65 1398 129 14 5 chr1 22545440 22545649 -259648015 - AluSg/x SINE Alu -19 291 81 22 0 0 0 chr1 22546050 22546072 -259647592 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 22546271 22546293 -259647371 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 22546860 22546902 -259646762 + A-rich Low_complexity Low_complexity 1 42 0 286 315 81 0 chr1 22546964 22547075 -259646589 - MIR SINE MIR -48 214 95 2215 118 0 0 chr1 22547181 22547478 -259646186 + AluSx SINE Alu 1 297 -15 1849 158 11 0 chr1 22547888 22548202 -259645462 - AluJb SINE Alu 0 317 1 1749 171 0 44 chr1 22548263 22548578 -259645086 - AluJo SINE Alu -11 301 1 417 276 35 14 chr1 22548588 22548733 -259644931 + MLT1J LTR MaLR 69 216 -295 720 184 0 27 chr1 22548740 22548887 -259644777 + FLAM_C SINE Alu 1 143 0 2225 110 10 0 chr1 22548921 22549231 -259644433 - AluSq SINE Alu 0 313 1 3100 196 73 78 chr1 22549331 22550007 -259643657 + L1MC3 LINE L1 6684 7355 -430 1827 141 4 18 chr1 22550007 22550283 -259643381 - AluJo SINE Alu -17 295 24 3100 196 73 78 chr1 22550283 22550697 -259642967 + L1MC3 LINE L1 7355 7769 -16 1047 121 13 0 chr1 22550885 22551042 -259642622 + AluSg/x SINE Alu 146 304 -6 23 0 0 0 chr1 22551128 22551151 -259642513 + AT_rich Low_complexity Low_complexity 1 23 0 252 303 182 10 chr1 22551457 22551556 -259642108 + L2 LINE L2 3193 3308 -5 2143 89 16 23 chr1 22551744 22552048 -259641616 + AluSx SINE Alu 1 302 -10 1143 105 0 0 chr1 22552887 22553040 -259640624 + FRAM SINE Alu 8 160 -16 1321 130 5 0 chr1 22553051 22553251 -259640413 + MER1B DNA MER1_type 1 201 -96 256 310 0 0 chr1 22554101 22554159 -259639505 + (CA)n Simple_repeat Simple_repeat 2 59 0 1095 127 6 0 chr1 22555568 22555726 -259637938 - AluSg/x SINE Alu -5 305 147 334 115 0 19 chr1 22555727 22555779 -259637885 - AluSg/x SINE Alu -95 207 157 1668 88 0 5 chr1 22555779 22555995 -259637669 - AluSq SINE Alu -98 215 1 2393 69 0 0 chr1 22556212 22556502 -259637162 + AluY SINE Alu 1 290 -21 1933 92 4 0 chr1 22556792 22557042 -259636622 - AluSq SINE Alu -19 294 44 233 278 0 0 chr1 22557517 22557528 -259636136 + MER3 DNA MER1_type 37 47 -162 551 263 134 6 chr1 22557528 22557707 -259635957 - MER3 DNA MER1_type 0 209 8 1977 136 3 26 chr1 22557789 22557956 -259635708 - AluSx SINE Alu -17 295 137 2357 100 3 0 chr1 22557956 22558266 -259635398 - AluY SINE Alu 0 311 1 1977 136 3 26 chr1 22558266 22558400 -259635264 - AluSx SINE Alu -175 137 1 2118 129 0 13 chr1 22558757 22559066 -259634598 - AluSx SINE Alu -7 305 1 198 0 0 0 chr1 22559067 22559089 -259634575 + (TTC)n Simple_repeat Simple_repeat 3 24 0 893 118 0 8 chr1 22559107 22559226 -259634438 - FLAM_C SINE Alu -25 118 1 847 103 41 0 chr1 22559482 22559627 -259634037 + L1MA7 LINE L1 6140 6290 -1 625 182 0 25 chr1 22559964 22560085 -259633579 + FLAM_A SINE Alu 11 128 -14 1726 179 3 20 chr1 22561094 22561395 -259632269 + AluJo SINE Alu 1 296 -16 1291 113 113 0 chr1 22561397 22561582 -259632082 + AluSq SINE Alu 1 206 -107 207 167 22 67 chr1 22561908 22561998 -259631666 + (TCTCTG)n Simple_repeat Simple_repeat 6 91 0 967 94 8 0 chr1 22562106 22562263 -259631401 - AluSg/x SINE Alu 0 313 156 882 55 0 0 chr1 22562264 22562374 -259631290 - AluSp SINE Alu -203 110 1 504 134 21 21 chr1 22562969 22563066 -259630598 + FLAM_A SINE Alu 43 139 -3 280 263 38 0 chr1 22563825 22563905 -259629759 - MER5A DNA MER1_type -103 86 4 1632 170 3 39 chr1 22564495 22564817 -259628847 + AluJb SINE Alu 12 323 0 22 35 0 0 chr1 22564850 22564879 -259628785 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 22565463 22565486 -259628178 + AT_rich Low_complexity Low_complexity 1 23 0 2555 59 0 3 chr1 22566952 22567256 -259626408 + AluY SINE Alu 1 303 -8 1488 252 98 42 chr1 22567991 22568759 -259624905 + L2 LINE L2 2420 3240 -73 2320 62 3 7 chr1 22568786 22569075 -259624589 + AluSg1 SINE Alu 1 288 -21 1952 131 25 0 chr1 22569670 22569964 -259623700 - AluSx SINE Alu 0 301 1 181 434 85 0 chr1 22570106 22570235 -259623429 + L2 LINE L2 3122 3261 -11 22 0 0 0 chr1 22570632 22570654 -259623010 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 22570853 22570875 -259622789 + AT_rich Low_complexity Low_complexity 1 22 0 214 191 0 0 chr1 22571442 22571484 -259622180 + A-rich Low_complexity Low_complexity 1 42 0 286 315 81 0 chr1 22571546 22571657 -259622007 - MIR SINE MIR -48 214 95 2215 118 0 0 chr1 22571763 22572060 -259621604 + AluSx SINE Alu 1 297 -15 1849 158 11 0 chr1 22572470 22572784 -259620880 - AluJb SINE Alu 0 317 1 1749 171 0 44 chr1 22572845 22573160 -259620504 - AluJo SINE Alu -11 301 1 417 276 35 14 chr1 22573170 22573315 -259620349 + MLT1J LTR MaLR 69 216 -295 720 184 0 27 chr1 22573322 22573469 -259620195 + FLAM_C SINE Alu 1 143 0 2455 87 3 0 chr1 22573503 22573815 -259619849 - AluSp SINE Alu 0 313 1 347 188 125 31 chr1 22573952 22574048 -259619616 + MLT1J LTR MaLR 403 507 -4 224 301 97 29 chr1 22577137 22577240 -259616424 + MIR SINE MIR 40 149 -59 346 346 69 15 chr1 22577321 22577451 -259616213 + MIR3 SINE MIR 9 145 -63 532 240 171 28 chr1 22577479 22577696 -259615968 + MIR SINE MIR 1 248 -14 1593 206 29 14 chr1 22578298 22578647 -259615017 - MLT1A2 LTR MaLR -3 371 18 690 171 0 89 chr1 22579384 22579530 -259614134 - FLAM_A SINE Alu 0 133 1 2567 66 0 0 chr1 22579564 22579868 -259613796 + AluY SINE Alu 1 304 -7 520 239 15 31 chr1 22580529 22580659 -259613005 - L2 LINE L2 0 3313 3186 217 250 0 0 chr1 22581014 22581062 -259612602 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 700 183 107 41 chr1 22581352 22581549 -259612115 - MER20 DNA MER1_type -2 217 8 1219 149 0 0 chr1 22581973 22582154 -259611510 - AluSg/x SINE Alu 0 312 132 1673 167 18 18 chr1 22582302 22582584 -259611080 - AluJo SINE Alu -30 282 1 2274 90 0 56 chr1 22582875 22583198 -259610466 - AluSx SINE Alu -7 305 1 621 243 148 28 chr1 22583256 22583668 -259609996 - L1ME3A LINE L1 -208 5962 5491 5299 66 32 0 chr1 22583903 22584645 -259609019 - L1PA8A LINE L1 -27 6104 5339 540 246 130 46 chr1 22584699 22585044 -259608620 - L1ME3A LINE L1 -818 5328 4955 1455 210 3 30 chr1 22585136 22585441 -259608223 - AluJo SINE Alu -15 297 1 261 271 0 0 chr1 22585486 22585556 -259608108 + L1ME3A LINE L1 6078 6147 -23 276 300 71 13 chr1 22585557 22585711 -259607953 - MER63 DNA MER1_type 0 1060 677 1490 205 8 0 chr1 22585806 22586060 -259607604 + AluJo SINE Alu 19 274 -38 1836 158 26 29 chr1 22586096 22586406 -259607258 + AluJo SINE Alu 1 309 -3 365 256 16 8 chr1 22586482 22586607 -259607057 + L1MC4a LINE L1 5757 5882 -1926 1460 150 84 25 chr1 22586872 22587146 -259606518 + AluJo SINE Alu 1 290 -22 188 314 0 20 chr1 22587338 22587389 -259606275 + MIR SINE MIR 20 69 -139 342 353 46 14 chr1 22587500 22587720 -259605944 + MIR SINE MIR 37 261 -1 474 286 47 42 chr1 22587794 22587986 -259605678 - MIR SINE MIR -13 249 57 2048 106 0 75 chr1 22588003 22588323 -259605341 - AluSx SINE Alu -16 296 1 21 36 0 0 chr1 22588326 22588354 -259605310 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 22589743 22589767 -259603897 + AT_rich Low_complexity Low_complexity 1 24 0 463 201 24 33 chr1 22589883 22590020 -259603644 + L1ME LINE L1 5512 5649 -472 3334 219 64 43 chr1 22590169 22590627 -259603037 + L1M4 LINE L1 3950 4397 -1749 1993 148 10 3 chr1 22590627 22590930 -259602734 + AluSx SINE Alu 1 305 -7 3334 219 64 43 chr1 22590930 22591660 -259602004 + L1M4 LINE L1 4397 5163 -983 1872 173 0 3 chr1 22591661 22591950 -259601714 + AluJb SINE Alu 1 288 -24 266 0 0 29 chr1 22591961 22591996 -259601668 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1844 157 10 3 chr1 22592037 22592331 -259601333 + AluJb SINE Alu 1 296 -16 351 0 0 0 chr1 22592333 22592372 -259601292 + (CA)n Simple_repeat Simple_repeat 2 40 0 1149 156 141 51 chr1 22592399 22592496 -259601168 + AluJo SINE Alu 15 102 -210 2303 100 0 3 chr1 22592496 22592806 -259600858 + AluSx SINE Alu 3 311 -1 1149 156 141 51 chr1 22592806 22592964 -259600700 + AluJo SINE Alu 102 293 -19 1747 168 28 0 chr1 22592966 22593252 -259600412 + AluJo SINE Alu 3 296 -16 2054 120 3 19 chr1 22593493 22593802 -259599862 + AluSg SINE Alu 1 304 -6 185 272 62 12 chr1 22594520 22594601 -259599063 + MIR SINE MIR 117 201 -61 1856 114 43 85 chr1 22595004 22595356 -259598308 - MER1B DNA MER1_type 0 337 1 362 299 26 8 chr1 22595430 22595547 -259598117 - MIR SINE MIR -16 246 128 21 0 0 0 chr1 22598511 22598532 -259595132 + AT_rich Low_complexity Low_complexity 1 21 0 186 318 200 12 chr1 22598704 22598874 -259594790 + MIR SINE MIR 5 206 -56 2356 77 20 0 chr1 22599646 22599945 -259593719 - AluY SINE Alu -6 305 1 21 0 0 0 chr1 22599946 22599967 -259593697 + AT_rich Low_complexity Low_complexity 1 21 0 2066 134 0 0 chr1 22600122 22600414 -259593250 - AluSx SINE Alu -6 306 15 1821 149 0 43 chr1 22600609 22600911 -259592753 - AluJb SINE Alu -23 289 1 221 232 0 74 chr1 22601548 22601643 -259592021 + A-rich Low_complexity Low_complexity 3 90 0 2254 67 0 58 chr1 22601646 22601959 -259591705 + AluY SINE Alu 1 295 -16 564 143 0 0 chr1 22603005 22603089 -259590575 - AluJb SINE Alu -22 290 207 1329 182 3 84 chr1 22603090 22603387 -259590277 - AluJo SINE Alu -39 273 1 802 102 79 0 chr1 22604676 22604803 -259588861 + MER85 DNA T2_type 1 137 -2 6575 142 42 27 chr1 22605703 22606330 -259587334 + Tigger3b DNA MER2_type 1 656 -2372 1622 166 86 14 chr1 22606330 22606620 -259587044 + AluJo SINE Alu 1 311 -1 6575 142 42 27 chr1 22606620 22607203 -259586461 + Tigger3b DNA MER2_type 656 1229 -2 236 163 81 23 chr1 22608028 22608114 -259585550 + (TATAA)n Simple_repeat Simple_repeat 1 91 0 620 173 0 0 chr1 22608395 22608505 -259585159 + FLAM_C SINE Alu 33 142 -1 23 0 0 0 chr1 22608506 22608529 -259585135 + AT_rich Low_complexity Low_complexity 1 23 0 635 208 106 21 chr1 22608544 22608780 -259584884 + MER112 DNA MER1_type 1 256 0 2376 86 3 0 chr1 22608885 22609186 -259584478 - AluSp SINE Alu -11 302 1 192 200 0 0 chr1 22610669 22610709 -259582955 + A-rich Low_complexity Low_complexity 1 40 0 2388 81 3 0 chr1 22612223 22612518 -259581146 - AluSg SINE Alu -14 296 1 2143 129 0 0 chr1 22612803 22613097 -259580567 - AluSx SINE Alu -18 294 1 1042 221 149 10 chr1 22613193 22613482 -259580182 + MER58B DNA MER1_type 10 338 -3 1614 183 3 10 chr1 22614504 22614804 -259578860 - AluJb SINE Alu -14 298 1 368 307 47 24 chr1 22615435 22615562 -259578102 + MIR3 SINE MIR 53 182 -26 273 29 0 0 chr1 22616968 22617002 -259576662 + (CA)n Simple_repeat Simple_repeat 2 35 0 7642 29 6 4 chr1 22617550 22618494 -259575170 - L1PA4 LINE L1 -3 6152 5213 2311 97 0 7 chr1 22619024 22619324 -259574340 + AluSx SINE Alu 1 298 -14 1857 159 0 3 chr1 22619935 22620231 -259573433 - AluJo SINE Alu -9 303 9 2165 114 7 0 chr1 22620460 22620767 -259572897 + AluSg SINE Alu 1 309 -1 1782 165 23 0 chr1 22621441 22621744 -259571920 + AluJo SINE Alu 1 310 -2 28 0 0 0 chr1 22622084 22622112 -259571552 + AT_rich Low_complexity Low_complexity 1 28 0 348 125 0 0 chr1 22622112 22622160 -259571504 + Alu SINE Alu 243 290 -12 1405 209 50 4 chr1 22622163 22622441 -259571223 + AluJo SINE Alu 1 291 -21 1250 184 48 32 chr1 22623441 22623691 -259569973 + AluJo SINE Alu 35 288 -24 503 249 56 20 chr1 22623892 22624074 -259569590 - L1M4 LINE L1 -2909 3237 3042 2512 55 0 7 chr1 22624074 22624381 -259569283 - AluY SINE Alu -6 305 1 503 249 56 20 chr1 22624381 22624447 -259569217 - L1M4 LINE L1 -3104 3042 2980 2097 185 73 29 chr1 22624449 22624925 -259568739 + MLT1D LTR MaLR 1 497 -8 873 224 190 3 chr1 22624940 22625266 -259568398 - L1M4 LINE L1 -3195 2951 2565 448 228 44 61 chr1 22625420 22625557 -259568107 - MLT1D LTR MaLR -105 400 287 3107 237 75 48 chr1 22625557 22626474 -259567190 + L1ME1 LINE L1 3553 4518 -1628 2185 69 0 4 chr1 22626474 22626750 -259566914 + AluY SINE Alu 37 311 0 3107 237 75 48 chr1 22626750 22627145 -259566519 + L1ME1 LINE L1 4518 4901 -1245 1582 226 82 53 chr1 22627143 22627487 -259566177 + L1ME1 LINE L1 5516 5881 -285 * 1708 150 10 43 chr1 22627487 22627787 -259565877 + AluJb SINE Alu 1 290 -22 1582 226 82 53 chr1 22627787 22627952 -259565712 + L1ME1 LINE L1 5881 6040 -126 1686 180 7 0 chr1 22628491 22628780 -259564884 - AluJo SINE Alu -21 291 1 793 157 8 15 chr1 22628982 22629116 -259564548 - FLAM_A SINE Alu 0 133 1 369 295 9 37 chr1 22629209 22629397 -259564267 - L1MC/D LINE L1 -736 5434 5293 1661 199 14 0 chr1 22629480 22629777 -259563887 - AluJb SINE Alu -11 301 1 2330 85 10 0 chr1 22630183 22630476 -259563188 - AluSp SINE Alu -15 298 3 27 73 0 0 chr1 22631269 22631324 -259562340 + AT_rich Low_complexity Low_complexity 1 55 0 322 247 88 65 chr1 22631487 22631657 -259562007 + L1M4 LINE L1 4649 4822 -1324 2175 92 28 0 chr1 22632584 22632868 -259560796 - AluSp SINE Alu -20 293 2 274 325 13 0 chr1 22633074 22633151 -259560513 + L2 LINE L2 3158 3235 -37 393 279 79 13 chr1 22633237 22633386 -259560278 - MIR SINE MIR -63 145 3 228 35 0 0 chr1 22634082 22634111 -259559553 + (TA)n Simple_repeat Simple_repeat 2 30 0 232 367 47 8 chr1 22634112 22634240 -259559424 + L2 LINE L2 3180 3312 -1 2013 117 13 17 chr1 22634831 22635130 -259558534 - AluSx SINE Alu -10 302 5 200 129 0 0 chr1 22635675 22635706 -259557958 + L2 LINE L2 3281 3311 -2 1548 192 11 0 chr1 22635827 22636103 -259557561 - AluJo SINE Alu -33 279 1 585 302 233 0 chr1 22636454 22636656 -259557008 + MIR SINE MIR 14 262 0 1744 171 44 0 chr1 22636669 22636967 -259556697 + AluJo SINE Alu 1 311 -1 1155 116 18 0 chr1 22637318 22637482 -259556182 - AluSq SINE Alu -13 300 134 1311 154 13 13 chr1 22638130 22638357 -259555307 - AluJo SINE Alu -11 301 75 2104 90 17 7 chr1 22638680 22638970 -259554694 - AluSc SINE Alu -16 293 1 2180 172 37 11 chr1 22638996 22639433 -259554231 - L1MB7 LINE L1 -16 6168 5721 698 238 66 6 chr1 22639882 22640083 -259553581 - MIR SINE MIR 0 262 48 4251 101 35 159 chr1 22640184 22640842 -259552822 - Tigger1 DNA MER2_type 0 2418 1771 821 172 8 0 chr1 22640842 22640970 -259552694 - FLAM_A SINE Alu -13 129 1 4251 101 35 159 chr1 22640970 22641137 -259552527 - Tigger1 DNA MER2_type -647 1771 1585 512 206 7 96 chr1 22641137 22641273 -259552391 - FLAM_A SINE Alu -15 127 4 241 91 0 0 chr1 22641273 22641306 -259552358 - Tigger1 DNA MER2_type -830 1588 1556 188 290 0 32 chr1 22641306 22641368 -259552296 - L2 LINE L2 -619 2695 2636 8207 128 78 35 chr1 22641455 22641917 -259551747 - Tigger1 DNA MER2_type -866 1552 1111 2301 105 0 0 chr1 22641917 22642213 -259551451 + AluSc SINE Alu 1 296 -13 8207 128 78 35 chr1 22642213 22643238 -259550426 - Tigger1 DNA MER2_type -1307 1111 1 271 333 95 66 chr1 22643449 22643647 -259550017 - L2 LINE L2 -583 2731 2540 2148 104 0 4 chr1 22643647 22643927 -259549737 + AluSg SINE Alu 1 279 -31 271 333 95 66 chr1 22643927 22644214 -259549450 - L2 LINE L2 -774 2540 2232 361 192 0 90 chr1 22644215 22644293 -259549371 - AluJ/FLAM SINE Alu -245 57 2 308 242 11 33 chr1 22644296 22644387 -259549277 + L1ME1 LINE L1 6064 6152 -14 184 300 0 0 chr1 22644800 22644850 -259548814 - L2 LINE L2 -1898 1416 1367 339 274 296 18 chr1 22645104 22645327 -259548337 + L2 LINE L2 3013 3297 -16 211 338 0 0 chr1 22645481 22645552 -259548112 + MIR SINE MIR 84 154 -108 839 170 0 0 chr1 22645831 22645990 -259547674 - L1MA4A LINE L1 -6 6297 6139 21 0 0 0 chr1 22646871 22646892 -259546772 + AT_rich Low_complexity Low_complexity 1 21 0 601 261 86 116 chr1 22647300 22647920 -259545744 + L1MEd LINE L1 224 824 -5295 2139 119 7 0 chr1 22648271 22648566 -259545098 - AluSx SINE Alu -15 297 1 2434 84 0 7 chr1 22649098 22649407 -259544257 + AluSg SINE Alu 1 307 -3 2130 130 0 3 chr1 22650119 22650427 -259543237 - AluSx SINE Alu -5 307 1 201 234 0 0 chr1 22651978 22652025 -259541639 + GA-rich Low_complexity Low_complexity 2 48 0 24 0 0 0 chr1 22653022 22653046 -259540618 + AT_rich Low_complexity Low_complexity 1 24 0 1086 172 6 0 chr1 22653283 22653457 -259540207 + FRAM SINE Alu 1 169 -7 618 14 0 0 chr1 22654246 22654317 -259539347 + (TG)n Simple_repeat Simple_repeat 2 72 0 1811 190 0 0 chr1 22654504 22654809 -259538855 + AluJo SINE Alu 1 305 -7 247 276 0 0 chr1 22654812 22654870 -259538794 + GA-rich Low_complexity Low_complexity 1 58 0 1189 174 116 27 chr1 22655022 22655308 -259538356 + AluJb SINE Alu 1 309 0 400 258 45 59 chr1 22655485 22655740 -259537924 + L1ME4a LINE L1 5624 5881 -240 1644 165 3 63 chr1 22655740 22656055 -259537609 - AluJb SINE Alu -15 297 2 207 0 0 0 chr1 22656060 22656083 -259537581 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 258 45 59 chr1 22656083 22656108 -259537556 + L1ME4a LINE L1 5885 5906 -215 326 264 23 78 chr1 22656323 22656452 -259537212 + MER20B DNA MER1_type 64 185 -598 674 265 23 50 chr1 22656842 22657061 -259536603 - MIR SINE MIR 0 262 50 1777 183 23 0 chr1 22657339 22657640 -259536024 + AluJb SINE Alu 1 308 -4 426 179 32 0 chr1 22657800 22657923 -259535741 + GA-rich Low_complexity Low_complexity 3 129 0 1744 112 0 0 chr1 22659093 22659326 -259534338 + AluSx SINE Alu 3 235 -77 195 42 0 0 chr1 22659335 22659359 -259534305 + (A)n Simple_repeat Simple_repeat 1 24 0 436 285 87 23 chr1 22659764 22659936 -259533728 - MIR SINE MIR -48 214 32 2162 117 3 7 chr1 22662520 22662819 -259530845 - AluSc SINE Alu -11 298 1 2174 102 0 3 chr1 22662932 22663251 -259530413 + AluSq SINE Alu 1 318 0 1185 215 68 31 chr1 22664084 22664409 -259529255 + MER58B DNA MER1_type 1 337 -4 2240 111 3 0 chr1 22664621 22664928 -259528736 + AluSg SINE Alu 1 308 -2 589 318 109 70 chr1 22665093 22665590 -259528074 - L2 LINE L2 -86 3227 2751 1881 181 0 10 chr1 22665590 22665899 -259527765 - AluJb SINE Alu -6 306 1 589 318 109 70 chr1 22665899 22666335 -259527329 - L2 LINE L2 -562 2751 2263 361 36 125 0 chr1 22666543 22666599 -259527065 + THE1C LTR MaLR 1 63 -312 671 308 130 14 chr1 22666666 22666958 -259526706 - L2 LINE L2 -557 2757 2432 180 0 0 0 chr1 22666982 22667002 -259526662 + (A)n Simple_repeat Simple_repeat 1 20 0 813 131 0 25 chr1 22667034 22667156 -259526508 - AluJ SINE Alu -12 300 182 733 125 27 0 chr1 22667156 22667268 -259526396 - AluJ SINE Alu -197 115 1 9664 186 37 16 chr1 22667595 22670020 -259523644 + L1P5 LINE L1 2825 5310 -841 378 0 0 0 chr1 22670020 22670062 -259523602 + (TAA)n Simple_repeat Simple_repeat 2 43 0 9664 186 37 16 chr1 22670062 22670511 -259523153 + L1P5 LINE L1 5310 5748 -403 2234 97 21 0 chr1 22670551 22670841 -259522823 + AluSq SINE Alu 3 298 -15 1595 172 34 24 chr1 22670848 22671145 -259522519 + AluJo SINE Alu 6 305 -7 29 0 0 25 chr1 22671449 22671467 -259522197 + AT_rich Low_complexity Low_complexity 1 18 -21 2308 87 0 0 chr1 22671467 22671753 -259521911 + AluSc SINE Alu 1 286 -23 29 0 0 25 chr1 22671753 22671774 -259521890 + AT_rich Low_complexity Low_complexity 18 39 0 660 204 0 0 chr1 22671842 22671984 -259521680 - L1MA4 LINE L1 -117 6183 6042 1211 135 86 37 chr1 22672515 22672759 -259520905 - Tigger2 DNA MER2_type 0 2718 2463 3408 139 39 88 chr1 22672818 22673284 -259520380 - Tigger2 DNA MER2_type -1964 754 341 840 169 0 0 chr1 22673284 22673414 -259520250 - FLAM_C SINE Alu -1 132 3 3408 139 39 88 chr1 22673414 22673740 -259519924 - Tigger2 DNA MER2_type -2377 341 1 1726 104 119 40 chr1 22674036 22674314 -259519350 + AluSx SINE Alu 1 300 -12 357 320 34 20 chr1 22674542 22674689 -259518975 - MIR3 SINE MIR -20 188 40 3271 157 43 5 chr1 22674983 22675587 -259518077 - MER73 LTR ERVL 0 644 18 343 274 44 0 chr1 22675743 22675856 -259517808 - MER94 DNA DNA -15 119 2 400 326 114 22 chr1 22676133 22676360 -259517304 - MIR SINE MIR -2 260 13 2173 105 7 7 chr1 22676840 22677134 -259516530 - AluSx SINE Alu -14 298 5 290 143 182 39 chr1 22677170 22677247 -259516417 + Charlie8 DNA MER1_type 294 381 -2036 543 185 139 0 chr1 22678330 22678438 -259515226 - FLAM_A SINE Alu -8 125 3 2068 121 0 23 chr1 22678539 22678844 -259514820 - AluSx SINE Alu -14 298 1 1013 216 135 17 chr1 22679012 22679308 -259514356 - MER2 DNA MER2_type -14 331 1 27 0 0 0 chr1 22679648 22679675 -259513989 + AT_rich Low_complexity Low_complexity 1 27 0 1008 133 32 0 chr1 22680330 22680488 -259513176 - AluSg/x SINE Alu -13 297 135 2198 103 3 0 chr1 22680695 22680985 -259512679 + AluY SINE Alu 1 291 -20 287 218 7 129 chr1 22680991 22681044 -259512620 + L1MC4a LINE L1 5780 5838 -1970 2346 83 0 0 chr1 22681044 22681334 -259512330 + AluSq SINE Alu 1 290 -23 287 218 7 129 chr1 22681334 22681427 -259512237 + L1MC4a LINE L1 5838 5908 -1900 1903 139 24 0 chr1 22682001 22682295 -259511369 - AluSx SINE Alu -11 301 1 2051 123 3 7 chr1 22682714 22683014 -259510650 + AluSx SINE Alu 1 299 -13 2626 276 114 24 chr1 22684250 22685261 -259508403 - L2 LINE L2 -731 2583 1482 204 67 0 0 chr1 22685733 22685763 -259507901 + (A)n Simple_repeat Simple_repeat 1 30 0 37 23 0 0 chr1 22685973 22686017 -259507647 + AT_rich Low_complexity Low_complexity 1 44 0 189 345 0 0 chr1 22686087 22686142 -259507522 + MIR SINE MIR 92 146 -62 976 244 0 31 chr1 22686157 22686386 -259507278 + MER58A DNA MER1_type 1 222 -2 1464 44 0 0 chr1 22686538 22686718 -259506946 - L1PA4 LINE L1 0 6155 5976 823 132 22 15 chr1 22687118 22687254 -259506410 + AluSq/x SINE Alu 1 137 -175 2318 95 0 0 chr1 22687554 22687849 -259505815 - AluSx SINE Alu -17 295 1 21 89 0 0 chr1 22687849 22687905 -259505759 + AT_rich Low_complexity Low_complexity 1 56 0 693 190 9 0 chr1 22688076 22688192 -259505472 - FLAM_C SINE Alu -16 117 1 2175 121 0 7 chr1 22688201 22688508 -259505156 - AluSc SINE Alu -4 305 1 2145 127 0 10 chr1 22688851 22689159 -259504505 + AluSg SINE Alu 1 305 -5 413 158 24 24 chr1 22689199 22689281 -259504383 - AluJ/FRAM SINE Alu -11 301 220 212 198 0 70 chr1 22689393 22689479 -259504185 + (CCCCG)n Simple_repeat Simple_repeat 4 83 0 315 188 25 25 chr1 22689883 22689963 -259503701 + AluJ/FRAM SINE Alu 220 299 -3 1662 155 17 14 chr1 22690020 22690310 -259503354 - AluSq SINE Alu -22 291 1 774 130 0 89 chr1 22690316 22690462 -259503202 - FLAM_C SINE Alu 0 133 1 1809 158 0 3 chr1 22690694 22690978 -259502686 + AluSx SINE Alu 26 308 -4 707 203 8 8 chr1 22690987 22691120 -259502544 + AluJo/FLAM SINE Alu 1 133 -179 2595 47 0 0 chr1 22691123 22691424 -259502240 + AluY SINE Alu 1 301 -10 544 112 0 11 chr1 22691530 22691619 -259502045 - L1M3 LINE L1 -751 5583 5496 1689 138 50 0 chr1 22691619 22691879 -259501785 - AluSx SINE Alu -16 296 24 2268 229 30 23 chr1 22691901 22692647 -259501017 - L1M3 LINE L1 -884 5262 4512 359 301 128 19 chr1 22692841 22692997 -259500667 - L2 LINE L2 -349 2965 2793 208 365 46 57 chr1 22693338 22693620 -259500044 + L2 LINE L2 2812 3090 -182 5548 79 51 43 chr1 22693654 22694588 -259499076 - SVA Other Other 0 1386 445 4711 64 29 16 chr1 22694824 22695509 -259498155 - SVA Other Other -688 698 5 2297 119 0 0 chr1 22696893 22697204 -259496460 + AluSx SINE Alu 1 311 -1 1519 198 0 8 chr1 22697465 22697733 -259495931 + AluSx SINE Alu 1 266 -46 1311 181 26 0 chr1 22698379 22698611 -259495053 + Tigger7 DNA MER2_type 30 267 -2220 392 200 53 21 chr1 22698622 22698717 -259494947 + Tigger7 DNA MER2_type 2390 2487 0 521 259 111 0 chr1 22699338 22699500 -259494164 - L2 LINE L2 -40 3273 3094 2306 59 45 0 chr1 22699679 22699969 -259493695 - AluY SINE Alu -8 303 1 733 209 0 8 chr1 22699986 22700120 -259493544 + FLAM_A SINE Alu 1 133 0 1672 196 3 7 chr1 22701491 22701807 -259491857 - AluJo SINE Alu 0 315 1 1816 88 4 4 chr1 22702107 22702371 -259491293 - AluSc SINE Alu 0 303 40 21 36 0 0 chr1 22702455 22702483 -259491181 + AT_rich Low_complexity Low_complexity 1 28 0 1005 150 0 25 chr1 22702823 22702983 -259490681 + FRAM SINE Alu 1 153 -23 1665 174 92 36 chr1 22703036 22703427 -259490237 - MSTB1 LTR MaLR -19 413 1 2021 83 72 7 chr1 22703436 22703713 -259489951 - AluSg SINE Alu -15 295 1 506 223 0 8 chr1 22703713 22703767 -259489897 - L1MB3 LINE L1 -41 6142 6089 1505 199 20 43 chr1 22703767 22704069 -259489595 + AluJo SINE Alu 1 295 -17 506 223 0 8 chr1 22704069 22704144 -259489520 - L1MB3 LINE L1 -94 6089 6014 810 182 56 20 chr1 22704144 22704342 -259489322 - MER46A DNA MER2_type 0 236 32 2614 68 0 0 chr1 22704355 22704666 -259488998 - AluY SINE Alu 0 311 1 1793 160 9 9 chr1 22704671 22705015 -259488649 - L1MB3 LINE L1 -161 6022 5679 222 37 0 0 chr1 22705016 22705043 -259488621 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1907 108 7 42 chr1 22705051 22705337 -259488327 - AluSx SINE Alu -36 276 1 1536 176 99 0 chr1 22705337 22705609 -259488055 - AluJb SINE Alu -13 299 1 886 216 40 46 chr1 22705614 22706220 -259487444 - L1M4c LINE L1 -4066 2318 1622 675 239 0 50 chr1 22706323 22706482 -259487182 + FRAM SINE Alu 1 143 -33 180 0 0 0 chr1 22706482 22706502 -259487162 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1237 179 113 44 chr1 22706594 22706868 -259486796 - AluJb SINE Alu -19 293 1 990 283 122 42 chr1 22707181 22707424 -259486240 + L2 LINE L2 2558 2780 -533 1600 145 54 85 chr1 22707424 22707811 -259485853 - THE1C LTR MaLR 0 375 1 990 283 122 42 chr1 22707811 22708262 -259485402 + L2 LINE L2 2780 3313 0 24 0 0 0 chr1 22708472 22708496 -259485168 + AT_rich Low_complexity Low_complexity 1 24 0 1616 193 14 14 chr1 22708645 22708941 -259484723 - AluJo SINE Alu -16 296 1 2204 94 24 0 chr1 22708949 22709236 -259484428 - AluSc SINE Alu -15 294 1 245 225 14 0 chr1 22709302 22709373 -259484291 + MER94 DNA DNA 1 72 -62 1076 159 24 0 chr1 22709444 22709614 -259484050 - FRAM SINE Alu -8 168 1 2323 109 3 0 chr1 22709906 22710210 -259483454 + AluSx SINE Alu 5 309 -3 663 133 0 0 chr1 22710585 22710683 -259482981 + AluJ/FLAM SINE Alu 1 98 -214 669 219 16 0 chr1 22710757 22710880 -259482784 + AluJb SINE Alu 1 125 -187 1791 47 5 0 chr1 22710883 22711095 -259482569 - AluY SINE Alu -17 294 82 3764 40 39 2 chr1 22711195 22711713 -259481951 - L1P LINE L1 -1972 4174 3638 7262 43 2 5 chr1 22711713 22713331 -259480333 + L1PA5 LINE L1 4534 6149 -5 22 0 0 0 chr1 22713331 22713353 -259480311 + AT_rich Low_complexity Low_complexity 1 22 0 5153 40 0 5 chr1 22713366 22714027 -259479637 + L1PA5 LINE L1 5519 6176 0 339 258 19 0 chr1 22714082 22714179 -259479485 + FRAM/FAM SINE Alu 1 72 -103 544 164 43 0 chr1 22714298 22714414 -259479250 - MER46C DNA MER2_type -69 269 149 1493 175 12 4 chr1 22714583 22714834 -259478830 - AluJo SINE Alu -59 253 1 2003 172 57 2 chr1 22715337 22715743 -259477921 + L1PB4 LINE L1 5715 6142 -14 642 142 26 0 chr1 22716177 22716290 -259477374 + L1MB3 LINE L1 6059 6174 -9 1239 229 21 11 chr1 22716803 22717179 -259476485 + L1ME1 LINE L1 4758 5137 -1009 829 142 0 31 chr1 22717180 22717307 -259476357 + FLAM_C SINE Alu 1 123 -20 407 255 6 31 chr1 22717316 22717477 -259476187 + L1ME1 LINE L1 5121 5277 -869 1715 184 13 7 chr1 22717481 22717791 -259475873 + AluJb SINE Alu 1 312 0 302 127 16 48 chr1 22717804 22717867 -259475797 + L1ME1 LINE L1 5272 5332 -1012 1531 186 52 4 chr1 22717889 22718158 -259475506 - AluJo SINE Alu -30 282 1 2085 220 24 26 chr1 22718160 22718733 -259474931 + L1ME1 LINE L1 5317 5888 -278 270 98 0 0 chr1 22718734 22718775 -259474889 + Alu SINE Alu 242 282 -20 531 241 46 29 chr1 22718784 22718958 -259474706 + L1ME1 LINE L1 5882 6058 -108 1231 168 62 11 chr1 22719030 22719304 -259474360 + L1MB8 LINE L1 5584 5871 -307 554 246 7 21 chr1 22719711 22719853 -259473811 - MIR SINE MIR -90 172 33 2001 145 6 6 chr1 22721052 22721363 -259472301 + AluSx SINE Alu 1 311 -1 2141 106 20 0 chr1 22721780 22722073 -259471591 + AluSq SINE Alu 1 299 -14 2218 119 0 0 chr1 22723208 22723503 -259470161 + AluSx SINE Alu 1 295 -17 200 125 25 0 chr1 22723503 22723543 -259470121 + (TA)n Simple_repeat Simple_repeat 2 42 0 306 0 0 0 chr1 22723543 22723577 -259470087 + (CA)n Simple_repeat Simple_repeat 2 35 0 549 229 206 56 chr1 22723579 22723696 -259469968 - MIR SINE MIR -15 247 149 2040 121 0 43 chr1 22723696 22724018 -259469646 + AluJb SINE Alu 4 311 -1 549 229 206 56 chr1 22724018 22724114 -259469550 - MIR SINE MIR -113 149 2 1184 197 46 23 chr1 22724182 22724441 -259469223 + AluJo SINE Alu 29 293 -19 1043 150 62 5 chr1 22724531 22724724 -259468940 + MER2 DNA MER2_type 1 204 -141 1302 186 51 41 chr1 22724724 22725048 -259468616 - AluJb SINE Alu 0 312 1 497 149 0 0 chr1 22725082 22725156 -259468508 - AluJ/FLAM SINE Alu -238 74 1 553 290 91 5 chr1 22725157 22725343 -259468321 + L2 LINE L2 3111 3312 -1 2503 50 0 10 chr1 22725694 22725993 -259467671 + AluY SINE Alu 1 296 -15 2140 104 7 3 chr1 22725998 22726296 -259467368 + AluSq SINE Alu 1 299 -14 1071 263 153 84 chr1 22726608 22726803 -259466861 + L1MCc LINE L1 19 199 -6224 2242 95 7 7 chr1 22726803 22727099 -259466565 + AluSq SINE Alu 1 296 -17 1071 263 153 84 chr1 22727099 22727800 -259465864 + L1MCc LINE L1 199 977 -5446 599 254 38 33 chr1 22727808 22727880 -259465784 + L1MCc LINE L1 1115 1185 -5238 607 149 75 0 chr1 22727880 22727987 -259465677 + AluJo/FLAM SINE Alu 2 116 -186 2149 111 0 14 chr1 22727987 22728284 -259465380 - AluSx SINE Alu -4 308 16 599 254 38 33 chr1 22728284 22728423 -259465241 + L1MCc LINE L1 1184 1328 -5095 415 252 99 49 chr1 22728690 22728955 -259464709 + L1MCc LINE L1 1366 1616 -5506 2142 131 0 23 chr1 22728955 22729261 -259464403 + AluSx SINE Alu 1 299 -13 415 252 99 49 chr1 22729261 22729704 -259463960 + L1MCc LINE L1 1616 2314 -4808 1621 167 39 39 chr1 22729704 22730015 -259463649 + AluJb SINE Alu 1 311 -1 415 252 99 49 chr1 22730015 22730071 -259463593 + L1MCc LINE L1 2314 2366 -4756 1587 185 34 20 chr1 22730452 22730744 -259462920 - AluJo SINE Alu -16 296 1 2108 136 0 3 chr1 22730787 22731088 -259462576 - AluSx SINE Alu -12 300 1 2353 84 0 7 chr1 22731230 22731529 -259462135 - AluSg SINE Alu -13 297 1 2089 142 3 3 chr1 22732391 22732702 -259460962 + AluSx SINE Alu 1 311 -1 2159 100 13 10 chr1 22733642 22733951 -259459713 + AluSq SINE Alu 1 310 -3 2734 17 0 0 chr1 22734324 22734625 -259459039 + AluYb8 SINE Alu 1 301 -17 2343 107 0 0 chr1 22734659 22734969 -259458695 + AluSg SINE Alu 1 310 0 1098 166 84 37 chr1 22735247 22735543 -259458121 + MER33 DNA MER1_type 1 310 -14 1712 176 19 7 chr1 22735552 22735859 -259457805 - AluJo SINE Alu -1 311 1 1779 150 16 39 chr1 22735946 22736252 -259457412 + AluJo SINE Alu 1 299 -13 27 0 0 0 chr1 22737548 22737575 -259456089 + AT_rich Low_complexity Low_complexity 1 27 0 568 222 27 0 chr1 22737785 22738130 -259455534 + (CATA)n Simple_repeat Simple_repeat 1 354 0 2100 109 3 26 chr1 22740470 22740773 -259452891 - AluSg SINE Alu -14 296 1 243 88 0 0 chr1 22740867 22740901 -259452763 + (CA)n Simple_repeat Simple_repeat 2 35 0 2416 81 0 0 chr1 22740901 22741197 -259452467 - AluSx SINE Alu -16 296 1 1512 165 100 0 chr1 22741495 22741756 -259451908 + AluJb SINE Alu 1 287 -25 1472 124 171 19 chr1 22742050 22742307 -259451357 - AluSg1 SINE Alu -11 298 3 508 153 9 27 chr1 22743733 22743844 -259449820 - FAM SINE Alu -2 183 75 2147 124 3 0 chr1 22743877 22744184 -259449480 - AluSx SINE Alu -4 308 1 225 0 0 0 chr1 22744926 22744951 -259448713 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 22745771 22745792 -259447872 + AT_rich Low_complexity Low_complexity 1 21 0 2293 80 0 10 chr1 22745833 22746132 -259447532 - AluSg SINE Alu -14 296 1 1598 178 3 25 chr1 22746666 22746952 -259446712 + AluJo SINE Alu 3 282 -30 207 0 0 0 chr1 22746958 22746981 -259446683 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1351 170 180 23 chr1 22747095 22747593 -259446071 + Tigger1 DNA MER2_type 1 643 -1775 720 171 0 0 chr1 22747682 22747793 -259445871 - AluJb SINE Alu -187 125 15 3236 195 78 50 chr1 22747817 22748259 -259445405 + Charlie1 DNA MER1_type 1470 1898 -863 2123 54 68 0 chr1 22748259 22748537 -259445127 + AluSc SINE Alu 1 297 -12 3236 195 78 50 chr1 22748537 22748668 -259444996 + Charlie1 DNA MER1_type 1898 2024 -737 1754 175 3 7 chr1 22748668 22748953 -259444711 - AluJb SINE Alu -28 284 1 3236 195 78 50 chr1 22748953 22749333 -259444331 + Charlie1 DNA MER1_type 2024 2451 -310 365 138 38 25 chr1 22749412 22749492 -259444172 + Charlie1 DNA MER1_type 2444 2524 -237 883 162 78 0 chr1 22749519 22749673 -259443991 - FRAM SINE Alu 0 166 1 296 367 28 18 chr1 22751319 22751428 -259442236 - MIR SINE MIR -129 133 24 180 0 0 0 chr1 22753770 22753790 -259439874 + (GGA)n Simple_repeat Simple_repeat 3 22 0 227 271 186 0 chr1 22754228 22754330 -259439334 + MIR SINE MIR 21 151 -63 626 240 82 20 chr1 22754603 22754734 -259438930 + MER3 DNA MER1_type 2 150 -59 1934 174 0 0 chr1 22754734 22755038 -259438626 - AluSx SINE Alu -8 304 1 626 240 82 20 chr1 22755038 22755102 -259438562 + MER3 DNA MER1_type 150 209 0 4125 134 22 52 chr1 22755452 22755641 -259438023 - Tigger1 DNA MER2_type -1 2417 2224 2242 90 14 0 chr1 22755641 22755931 -259437733 - AluSg SINE Alu -16 294 1 4125 134 22 52 chr1 22755931 22756120 -259437544 - Tigger1 DNA MER2_type -194 2224 2031 1959 142 13 10 chr1 22756120 22756429 -259437235 - AluSx SINE Alu -2 310 1 4125 134 22 52 chr1 22756429 22756740 -259436924 - Tigger1 DNA MER2_type -387 2031 1754 2195 114 3 3 chr1 22756740 22757048 -259436616 - AluSq SINE Alu -5 308 1 4125 134 22 52 chr1 22757048 22757185 -259436479 - Tigger1 DNA MER2_type -664 1754 1614 541 234 9 0 chr1 22757294 22757401 -259436263 - FLAM_A SINE Alu -33 109 2 8542 124 47 31 chr1 22757401 22758961 -259434703 - Tigger1 DNA MER2_type -832 1586 1 540 342 88 53 chr1 22759469 22759550 -259434114 + L3 LINE CR1 611 688 -889 1738 58 22 18 chr1 22759550 22759776 -259433888 - AluY SINE Alu -2 309 83 540 342 88 53 chr1 22759776 22760510 -259433154 + L3 LINE CR1 688 1455 -122 22 0 0 0 chr1 22760784 22760806 -259432858 + AT_rich Low_complexity Low_complexity 1 22 0 325 255 57 28 chr1 22761325 22761431 -259432233 + MIR SINE MIR 95 203 -59 2367 81 0 3 chr1 22761434 22761731 -259431933 + AluSc SINE Alu 1 296 -13 794 147 81 33 chr1 22761757 22761968 -259431696 - L1M3 LINE L1 -709 5474 5254 332 74 0 0 chr1 22761969 22762023 -259431641 - Alu SINE Alu -1 301 248 24 32 0 0 chr1 22762500 22762531 -259431133 + AT_rich Low_complexity Low_complexity 1 31 0 1847 158 3 35 chr1 22762532 22762842 -259430822 - AluJb SINE Alu -12 300 1 2146 124 3 3 chr1 22763268 22763575 -259430089 - AluSx SINE Alu -5 307 1 539 319 93 20 chr1 22764042 22764246 -259429418 - MIR SINE MIR -26 236 18 293 234 117 54 chr1 22764612 22764731 -259428933 - MIR SINE MIR -41 167 53 34 42 0 0 chr1 22764884 22764932 -259428732 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 22765814 22765836 -259427828 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr1 22766116 22766153 -259427511 + (CA)n Simple_repeat Simple_repeat 2 38 0 198 91 0 0 chr1 22768497 22768530 -259425134 + (A)n Simple_repeat Simple_repeat 1 33 0 1442 166 0 59 chr1 22770884 22771174 -259422490 - AluJo SINE Alu -3 309 37 714 106 9 26 chr1 22771186 22771299 -259422365 - FLAM_A SINE Alu -12 130 20 254 294 141 25 chr1 22772314 22772477 -259421187 + MIR SINE MIR 20 201 -61 240 296 12 12 chr1 22772495 22772576 -259421088 - MIR SINE MIR -108 154 74 280 214 0 0 chr1 22774805 22774861 -259418803 - MIR SINE MIR -10 252 197 2229 120 0 0 chr1 22775020 22775312 -259418352 + AluSq SINE Alu 3 294 -19 198 0 0 0 chr1 22775418 22775440 -259418224 + (A)n Simple_repeat Simple_repeat 1 22 0 312 227 145 82 chr1 22775454 22775661 -259418003 + L1ME4a LINE L1 5724 5943 -178 27 0 0 0 chr1 22775829 22775856 -259417808 + AT_rich Low_complexity Low_complexity 1 27 0 811 179 80 0 chr1 22775908 22776059 -259417605 + AluJb SINE Alu 136 298 -14 22 35 0 0 chr1 22776110 22776139 -259417525 + AT_rich Low_complexity Low_complexity 1 29 0 2290 99 0 10 chr1 22776239 22776542 -259417122 - AluSx SINE Alu -12 300 1 327 351 101 26 chr1 22776666 22776934 -259416730 + L1M4 LINE L1 4803 5090 -1056 1790 185 3 3 chr1 22777081 22777383 -259416281 - AluJo SINE Alu -10 302 1 2247 82 0 0 chr1 22777575 22777855 -259415809 - AluSg SINE Alu -30 280 1 652 208 7 7 chr1 22777891 22778045 -259415619 + MER3 DNA MER1_type 12 165 -44 1854 124 99 3 chr1 22778067 22778350 -259415314 + AluSg SINE Alu 1 310 0 440 158 108 0 chr1 22778373 22778493 -259415171 - L1MB2 LINE L1 -18 6153 6021 325 288 69 31 chr1 22778816 22778976 -259414688 + Charlie1a DNA MER1_type 5 170 -1285 1500 164 16 52 chr1 22779193 22779560 -259414104 + L1MB8 LINE L1 5825 6178 0 638 192 93 33 chr1 22779736 22779887 -259413777 + FRAM SINE Alu 1 160 -6 335 109 0 0 chr1 22780346 22780392 -259413272 - Alu SINE Alu -255 46 1 1907 148 36 7 chr1 22780440 22780743 -259412921 + AluSq SINE Alu 1 312 -1 264 212 0 0 chr1 22780745 22780811 -259412853 + GA-rich Low_complexity Low_complexity 3 68 0 251 342 52 19 chr1 22780813 22780968 -259412696 - L3 LINE CR1 -969 608 449 1050 110 0 0 chr1 22781323 22781459 -259412205 + AluSq/x SINE Alu 1 136 -176 27 0 0 0 chr1 22782565 22782592 -259411072 + AT_rich Low_complexity Low_complexity 1 27 0 2175 135 0 0 chr1 22782716 22783012 -259410652 + AluSx SINE Alu 1 296 -16 397 326 105 11 chr1 22783090 22783280 -259410384 + MIR SINE MIR 24 231 -31 2835 110 32 6 chr1 22783516 22783989 -259409675 + L1P4 LINE L1 5280 5764 -401 1412 189 56 56 chr1 22784099 22784475 -259409189 - L1MD2 LINE L1 -69 6290 5915 592 224 128 5 chr1 22784496 22784692 -259408972 + Charlie1a DNA MER1_type 332 551 -904 232 163 0 0 chr1 22784740 22784783 -259408881 + Charlie1a DNA MER1_type 1408 1450 -5 2503 204 29 0 chr1 22785406 22785931 -259407733 + L1PBa LINE L1 1 540 -6323 25 0 0 0 chr1 22785996 22786021 -259407643 + AT_rich Low_complexity Low_complexity 1 25 0 320 315 24 24 chr1 22786374 22786501 -259407163 + L1M4c LINE L1 540 666 -5718 2245 107 3 0 chr1 22786597 22786887 -259406777 + AluSx SINE Alu 1 291 -21 1944 140 3 6 chr1 22787020 22787335 -259406329 - L1PA15 LINE L1 0 6165 5852 2075 134 3 3 chr1 22787345 22787644 -259406020 - AluSx SINE Alu -13 299 1 1269 206 57 73 chr1 22787645 22788204 -259405460 + L1M4c LINE L1 908 1457 -4927 432 187 168 0 chr1 22788204 22788311 -259405353 + FLAM_C SINE Alu 1 125 -18 478 217 89 19 chr1 22788311 22788468 -259405196 + L1M4c LINE L1 1435 1602 -4782 2524 102 27 35 chr1 22788578 22788902 -259404762 + L1PA15 LINE L1 5746 6068 -97 2159 116 3 22 chr1 22788902 22789213 -259404451 + AluSx SINE Alu 1 305 -7 2524 102 27 35 chr1 22789213 22789292 -259404372 + L1PA15 LINE L1 6068 6146 -19 25 51 0 0 chr1 22789294 22789333 -259404331 + AT_rich Low_complexity Low_complexity 1 39 0 1710 175 3 18 chr1 22789542 22789828 -259403836 + AluJo SINE Alu 1 282 -30 826 355 139 16 chr1 22789857 22790618 -259403046 - L2 LINE L2 -445 2869 2015 233 233 50 0 chr1 22790838 22790898 -259402766 + MIR SINE MIR 190 252 -10 1860 162 23 7 chr1 22790931 22791233 -259402431 - AluSx SINE Alu -5 307 1 1089 173 0 0 chr1 22791437 22791605 -259402059 - AluJb SINE Alu -9 303 136 1570 176 19 42 chr1 22791631 22791938 -259401726 + AluJo SINE Alu 1 300 -12 2314 105 3 0 chr1 22792383 22792687 -259400977 + AluSx SINE Alu 1 305 -7 1799 165 7 7 chr1 22792695 22792986 -259400678 + AluSx SINE Alu 1 291 -21 762 187 0 0 chr1 22793124 22793247 -259400417 + FLAM_C SINE Alu 1 123 -10 1979 155 0 10 chr1 22793552 22793849 -259399815 - AluSx SINE Alu -18 294 1 2109 123 7 7 chr1 22794055 22794357 -259399307 - AluSx SINE Alu -10 302 1 450 85 0 0 chr1 22794357 22794416 -259399248 - AluSg/x SINE Alu -176 134 76 1246 153 5 10 chr1 22794416 22794625 -259399039 - AluSx SINE Alu -100 212 5 1758 193 52 27 chr1 22794747 22795228 -259398436 + L1MB3 LINE L1 5684 6176 -7 219 175 0 25 chr1 22795253 22795293 -259398371 - MIR SINE MIR -87 121 83 547 252 53 20 chr1 22795814 22795965 -259397699 - AluJo/FRAM SINE Alu -20 292 137 1720 148 44 7 chr1 22795967 22796238 -259397426 - AluSx SINE Alu -31 281 1 719 183 8 0 chr1 22796405 22796531 -259397133 + FLAM_C SINE Alu 1 127 -6 1605 159 9 59 chr1 22796764 22797084 -259396580 - AluJo SINE Alu -2 310 7 2083 144 19 27 chr1 22797136 22797503 -259396161 + THE1B LTR MaLR 1 364 0 254 157 45 56 chr1 22797547 22797636 -259396028 - MER33 DNA MER1_type -14 349 262 * 478 187 10 22 chr1 22797635 22797751 -259395913 - MER33 DNA MER1_type -250 74 1 2063 134 7 0 chr1 22797820 22798133 -259395531 + AluSx SINE Alu 1 315 0 327 336 49 16 chr1 22800440 22800562 -259393102 - MIR SINE MIR -90 172 47 1279 185 53 69 chr1 22800722 22801025 -259392639 + AluJo SINE Alu 1 298 -14 2609 179 69 91 chr1 22802219 22803368 -259390296 + MER52C LTR ERV1 194 1276 -2 1967 158 3 3 chr1 22803511 22803814 -259389850 + AluJb SINE Alu 1 303 -9 196 188 141 16 chr1 22804245 22804309 -259389355 - L2 LINE L2 -5 3308 3237 338 186 395 16 chr1 22804800 22804924 -259388740 + MER5B DNA MER1_type 8 178 0 1615 214 17 30 chr1 22805813 22806394 -259387270 + L1M4 LINE L1 4590 5124 -1022 615 193 42 78 chr1 22806405 22806597 -259387067 + AluSc SINE Alu 112 296 -13 955 145 16 5 chr1 22806600 22806854 -259386810 + L1M4 LINE L1 5170 5425 -743 2018 197 91 13 chr1 22806916 22807498 -259386166 + MER21B LTR ERV1 2 655 -208 2461 144 46 5 chr1 22807616 22808033 -259385631 + MER57B LTR ERV1 1 434 0 901 153 0 0 chr1 22808168 22808299 -259385365 - FLAM_C SINE Alu -12 131 1 1713 183 33 0 chr1 22808887 22809188 -259384476 - AluJb SINE Alu -1 311 1 1521 150 88 11 chr1 22810520 22810794 -259382870 + AluJb SINE Alu 1 295 -17 1336 166 0 14 chr1 22811548 22811759 -259381905 - AluJb SINE Alu -2 310 103 1388 194 51 17 chr1 22811762 22812055 -259381609 + AluJo SINE Alu 5 307 -5 444 300 62 48 chr1 22813861 22814088 -259379576 - MIR SINE MIR -22 240 11 2098 178 112 20 chr1 22814139 22814685 -259378979 + LTR48 LTR ERV1 192 787 0 1266 260 109 25 chr1 22815203 22815733 -259377931 + LTR41 LTR ERVL 3 577 -196 709 299 15 15 chr1 22815759 22816023 -259377641 + ERVL LTR ERVL 2980 3243 -2521 408 241 241 10 chr1 22816079 22816274 -259377390 + LTR41 LTR ERVL 423 662 -111 1392 162 0 45 chr1 22816578 22816825 -259376839 + AluJo SINE Alu 71 306 -6 517 247 202 4 chr1 22818164 22818411 -259375253 + L1ME1 LINE L1 5866 6161 -5 1430 194 13 61 chr1 22818480 22818790 -259374874 + AluJo SINE Alu 1 295 -17 322 274 18 9 chr1 22818802 22818915 -259374749 + (CATATA)n Simple_repeat Simple_repeat 6 119 0 380 198 87 8 chr1 22819316 22819442 -259374222 - Charlie4 DNA MER1_type -32 1929 1794 5859 61 24 32 chr1 22819454 22820329 -259373335 + SVA Other Other 1 868 -518 1926 127 28 10 chr1 22821002 22821293 -259372371 + AluSq SINE Alu 1 296 -17 1905 129 0 0 chr1 22821460 22821750 -259371914 + AluSx SINE Alu 21 310 0 1072 199 79 14 chr1 22822376 22822592 -259371072 + AluJo SINE Alu 1 230 -82 2005 127 0 56 chr1 22823995 22824318 -259369346 - AluSx SINE Alu -7 305 1 3215 48 5 11 chr1 22824450 22824888 -259368776 - L1P LINE L1 -1594 4552 4118 6649 56 19 42 chr1 22825095 22826071 -259367593 + SVA Other Other 433 1386 0 25 51 0 0 chr1 22826997 22827036 -259366628 + AT_rich Low_complexity Low_complexity 1 39 0 1230 260 55 11 chr1 22828598 22829033 -259364631 + L1ME3A LINE L1 5496 5949 -221 258 314 6 51 chr1 22829819 22829994 -259363670 - Charlie8 DNA MER1_type -2154 263 97 958 185 6 12 chr1 22830109 22830282 -259363382 - AluJ SINE Alu -12 300 129 830 188 0 0 chr1 22830320 22830453 -259363211 - AluJ SINE Alu -169 133 1 21 36 0 0 chr1 22830558 22830586 -259363078 + AT_rich Low_complexity Low_complexity 1 28 0 1673 167 21 14 chr1 22831546 22831834 -259361830 - AluJb SINE Alu -22 290 1 389 309 8 0 chr1 22831836 22831962 -259361702 + MLT1E1 LTR MaLR 4 130 -524 680 222 43 101 chr1 22832026 22832214 -259361450 - L2 LINE L2 -503 2811 2640 746 223 60 6 chr1 22832214 22832380 -259361284 + FAM SINE Alu 1 175 0 680 222 43 101 chr1 22832380 22832448 -259361216 - L2 LINE L2 -674 2640 2570 610 268 55 11 chr1 22832500 22832683 -259360981 - L2 LINE L2 0 3313 3123 945 175 85 0 chr1 22832738 22832949 -259360715 - MER46A DNA MER2_type -7 229 1 383 315 9 0 chr1 22833009 22833117 -259360547 - L2 LINE L2 -976 2338 2230 2304 121 3 0 chr1 22833326 22833631 -259360033 - AluSx SINE Alu -6 306 1 1894 182 0 3 chr1 22833642 22833944 -259359720 - AluJo SINE Alu -11 301 1 225 210 0 16 chr1 22834138 22834186 -259359478 + (TA)n Simple_repeat Simple_repeat 2 50 -12 2205 107 3 3 chr1 22834186 22834475 -259359189 - AluSx SINE Alu -23 289 1 225 210 0 16 chr1 22834475 22834488 -259359176 + (TA)n Simple_repeat Simple_repeat 50 62 0 997 182 0 12 chr1 22834636 22834806 -259358858 - AluJb SINE Alu -12 300 133 1901 117 0 60 chr1 22835312 22835612 -259358052 - AluSx SINE Alu -30 282 1 783 205 70 12 chr1 22836973 22837144 -259356520 + AluJo SINE Alu 112 292 -20 320 317 191 0 chr1 22837184 22837367 -259356297 + MIR SINE MIR 22 239 -23 881 167 172 11 chr1 22837561 22837741 -259355923 + AluJb SINE Alu 83 291 -21 214 178 0 0 chr1 22837879 22837924 -259355740 + A-rich Low_complexity Low_complexity 1 45 0 2258 134 0 0 chr1 22838704 22839017 -259354647 - AluSq SINE Alu 0 313 1 464 108 0 0 chr1 22839453 22839527 -259354137 + Alu SINE Alu 233 306 -3 2208 94 19 23 chr1 22839677 22839984 -259353680 + AluSx SINE Alu 3 308 -4 384 247 0 0 chr1 22840072 22840157 -259353507 + MIR SINE MIR 168 252 -10 712 261 53 0 chr1 22840164 22840352 -259353312 + MIR SINE MIR 44 241 -21 1122 196 54 0 chr1 22840379 22840603 -259353061 - MER46A DNA MER2_type 0 236 1 201 304 0 25 chr1 22841043 22841122 -259352542 + L2 LINE L2 3191 3267 -5 1684 186 0 35 chr1 22842705 22843016 -259350648 + AluJo SINE Alu 1 300 -12 1927 113 92 0 chr1 22843134 22843416 -259350248 + AluSg SINE Alu 1 308 -2 714 173 0 16 chr1 22843834 22843961 -259349703 + FLAM_C SINE Alu 1 125 -18 2219 82 4 0 chr1 22843970 22844284 -259349380 - AluY SINE Alu 0 315 1 25 0 0 0 chr1 22844284 22844309 -259349355 + AT_rich Low_complexity Low_complexity 1 25 0 693 228 73 56 chr1 22844464 22844696 -259348968 - MIR SINE MIR -19 243 8 208 290 50 30 chr1 22844760 22844860 -259348804 + L2 LINE L2 2716 2817 -497 509 154 0 0 chr1 22844898 22844989 -259348675 - MER3 DNA MER1_type -80 129 86 231 331 37 59 chr1 22845028 22845164 -259348500 + L2 LINE L2 2909 3041 -272 637 184 0 18 chr1 22845391 22845505 -259348159 - AluJb SINE Alu -16 296 185 21 0 0 0 chr1 22845655 22845676 -259347988 + AT_rich Low_complexity Low_complexity 1 21 0 741 213 31 76 chr1 22845722 22845947 -259347717 - MER20 DNA MER1_type -4 215 1 24 0 0 0 chr1 22846110 22846134 -259347530 + AT_rich Low_complexity Low_complexity 1 24 0 804 155 14 27 chr1 22846373 22846521 -259347143 + AluJo SINE Alu 3 148 -164 3058 206 17 31 chr1 22846527 22846869 -259346795 + L1MA4A LINE L1 2617 2962 -3886 1993 128 0 25 chr1 22846869 22847190 -259346474 + AluSq SINE Alu 1 313 0 3058 206 17 31 chr1 22847190 22847994 -259345670 + L1MA4A LINE L1 2962 3744 -3104 402 134 12 12 chr1 22848026 22848108 -259345556 + AluS SINE Alu 226 307 -3 3831 170 38 78 chr1 22848108 22848731 -259344933 + L1MA4A LINE L1 5412 6059 -946 1628 168 11 14 chr1 22848731 22849016 -259344648 + AluJo SINE Alu 23 306 -6 3831 170 38 78 chr1 22849016 22849190 -259344474 + L1MA4A LINE L1 6059 6238 -767 2344 88 3 3 chr1 22849190 22849498 -259344166 + AluSp SINE Alu 1 308 -5 3831 170 38 78 chr1 22849498 22850294 -259343370 + L1MA4A LINE L1 6238 6956 -49 2181 128 0 0 chr1 22850294 22850592 -259343072 + AluSx SINE Alu 1 298 -14 3831 170 38 78 chr1 22850592 22850630 -259343034 + L1MA4A LINE L1 6956 6994 -11 355 332 71 33 chr1 22850711 22850922 -259342742 + L3 LINE CR1 494 712 -865 1709 189 0 50 chr1 22850977 22851295 -259342369 + AluJo SINE Alu 1 302 -10 1406 154 0 69 chr1 22851315 22851463 -259342201 + AluJo SINE Alu 1 127 -185 2136 99 7 0 chr1 22851463 22851756 -259341908 + AluSx SINE Alu 3 297 -15 1406 154 0 69 chr1 22851756 22851854 -259341810 + AluJo SINE Alu 127 230 -82 394 315 56 51 chr1 23052487 23052684 -259140980 + MIR SINE MIR 20 217 -45 1791 152 3 7 chr1 23052758 23053060 -259140604 + AluSp SINE Alu 1 301 -12 1588 197 3 0 chr1 23053588 23053893 -259139771 - AluSx SINE Alu -1 311 6 1331 242 3 0 chr1 23053898 23054204 -259139460 - AluJb SINE Alu -3 309 3 267 223 102 102 chr1 23054714 23054920 -259138744 + L1ME3A LINE L1 5965 6170 0 234 261 154 8 chr1 23054932 23055062 -259138602 - L2 LINE L2 -2466 848 700 321 248 113 7 chr1 23055076 23055217 -259138447 + Charlie4 DNA MER1_type 105 260 -1701 1077 189 42 4 chr1 23055237 23055475 -259138189 + AluSx SINE Alu 1 247 -65 927 193 0 0 chr1 23057008 23057179 -259136485 + AluSg/x SINE Alu 139 309 -3 467 161 85 34 chr1 23058274 23058392 -259135272 - MER53 DNA DNA -65 124 1 301 109 0 0 chr1 23058653 23058699 -259134965 + L2 LINE L2 3267 3312 -1 306 260 294 0 chr1 23059842 23059988 -259133676 + MIR SINE MIR 7 195 -67 201 267 0 0 chr1 23060629 23060674 -259132990 + GA-rich Low_complexity Low_complexity 1 45 0 196 259 74 25 chr1 23061195 23061276 -259132388 + MIR SINE MIR 62 146 -62 420 216 30 52 chr1 23061412 23061546 -259132118 + MIR3 SINE MIR 11 141 -67 1929 140 0 3 chr1 23061573 23061887 -259131777 - AluSq SINE Alu 0 313 1 740 147 56 0 chr1 23062330 23062473 -259131191 - L1MB8 LINE L1 -212 5966 5816 3491 199 51 14 chr1 23062487 23063467 -259130197 - L1MB5 LINE L1 -16 6158 5260 2127 100 3 6 chr1 23063467 23063778 -259129886 - AluSx SINE Alu -2 310 1 1135 193 51 29 chr1 23063786 23063961 -259129703 - AluJo SINE Alu -8 304 119 1833 89 28 98 chr1 23063961 23064287 -259129377 + AluYb8 SINE Alu 2 304 -14 1135 193 51 29 chr1 23064287 23064386 -259129278 - AluJo SINE Alu -193 119 24 705 204 0 8 chr1 23064420 23064552 -259129112 - FLAM_A SINE Alu 0 133 3 1341 185 47 59 chr1 23064552 23064868 -259128796 - L1MB8 LINE L1 -579 5605 5282 2163 96 0 52 chr1 23064868 23065192 -259128472 - AluSg SINE Alu -3 307 1 1341 185 47 59 chr1 23065192 23065337 -259128327 - L1MB8 LINE L1 -902 5282 5137 1384 208 14 14 chr1 23065369 23065648 -259128016 - AluJo SINE Alu -29 283 5 1320 171 0 122 chr1 23065742 23066069 -259127595 - AluJo SINE Alu -14 288 2 2242 82 24 0 chr1 23066072 23066366 -259127298 - AluSq SINE Alu -12 301 1 255 61 0 0 chr1 23066412 23066445 -259127219 + (T)n Simple_repeat Simple_repeat 1 33 0 735 170 0 0 chr1 23066471 23066583 -259127081 - FLAM_C SINE Alu -18 125 14 464 295 23 29 chr1 23066880 23067053 -259126611 - L1MC/D LINE L1 -2162 5646 5475 821 188 0 0 chr1 23067143 23067276 -259126388 - FLAM_A SINE Alu 0 133 1 1746 145 35 11 chr1 23067483 23067766 -259125898 + AluSx SINE Alu 1 290 -22 816 189 0 0 chr1 23067799 23067942 -259125722 + AluJb SINE Alu 157 299 -13 1826 125 14 4 chr1 23068001 23068328 -259125336 - AluSx SINE Alu 0 330 1 2181 113 0 0 chr1 23068329 23068631 -259125033 - AluSc SINE Alu -7 302 1 1595 145 0 126 chr1 23068813 23069182 -259124482 - AluSx SINE Alu 0 328 1 402 289 176 53 chr1 23069185 23069524 -259124140 - L1ME LINE L1 -380 5782 5381 720 148 23 16 chr1 23069524 23069652 -259124012 - FLAM_C SINE Alu 0 133 5 402 289 176 53 chr1 23069652 23069727 -259123937 - L1ME LINE L1 -781 5381 5317 2090 115 10 0 chr1 23069754 23070059 -259123605 - AluSg SINE Alu -2 308 1 2094 126 0 16 chr1 23070080 23070397 -259123267 - AluSx SINE Alu 0 312 1 2352 68 0 0 chr1 23070400 23070695 -259122969 - AluY SINE Alu -16 295 1 509 292 101 88 chr1 23070761 23071091 -259122573 - L1ME LINE L1 -984 5162 4823 2108 120 7 0 chr1 23071091 23071399 -259122265 - AluSp SINE Alu -3 310 1 509 292 101 88 chr1 23071399 23071534 -259122130 - L1ME LINE L1 -1323 4823 4691 91 19 0 0 chr1 23071545 23071650 -259122014 + AT_rich Low_complexity Low_complexity 1 105 0 2118 106 0 0 chr1 23071650 23071942 -259121722 - AluSg SINE Alu -17 293 2 897 249 176 7 chr1 23071945 23072324 -259121340 + L2 LINE L2 2771 3207 -106 800 216 22 17 chr1 23072338 23072519 -259121145 - AluJo SINE Alu -13 299 118 408 246 95 32 chr1 23072578 23072704 -259120960 - MIR SINE MIR -58 204 71 318 307 23 74 chr1 23072701 23072877 -259120787 + MIR SINE MIR 83 249 -13 * 807 228 0 0 chr1 23072883 23073074 -259120590 + AluSg/x SINE Alu 135 312 0 2299 87 0 0 chr1 23073181 23073480 -259120184 - AluSg1 SINE Alu -10 299 1 484 153 0 0 chr1 23073480 23073552 -259120112 - AluS SINE Alu -17 293 222 365 285 54 23 chr1 23073640 23073770 -259119894 + L2 LINE L2 2925 3058 -214 204 118 29 0 chr1 23073808 23073842 -259119822 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 712 164 84 49 chr1 23073880 23073962 -259119702 - MER69 DNA AcHobo -11 2515 2437 2202 119 0 0 chr1 23073962 23074264 -259119400 + AluSx SINE Alu 1 302 -10 712 164 84 49 chr1 23074264 23074407 -259119257 - MER69 DNA AcHobo -89 2437 2282 798 179 0 22 chr1 23074407 23074541 -259119123 - FLAM_C SINE Alu -11 132 2 638 195 45 127 chr1 23074551 23074610 -259119054 - MER69 DNA AcHobo -242 2284 2222 1852 161 0 16 chr1 23074610 23074915 -259118749 - AluJo SINE Alu -10 302 3 2050 119 0 7 chr1 23074924 23075226 -259118438 - AluSg SINE Alu -10 300 1 638 195 45 127 chr1 23075226 23075306 -259118358 - MER69 DNA AcHobo -312 2214 2129 2394 78 0 0 chr1 23075306 23075615 -259118049 - AluY SINE Alu -2 309 1 638 195 45 127 chr1 23075615 23075756 -259117908 - MER69 DNA AcHobo -397 2129 2017 1240 251 138 5 chr1 23075760 23076150 -259117514 - MER69 DNA AcHobo -658 568 127 1928 121 10 7 chr1 23076152 23076442 -259117222 - AluSx SINE Alu 0 312 22 2149 102 0 37 chr1 23076485 23076809 -259116855 - AluSx SINE Alu 0 312 1 995 138 0 0 chr1 23076809 23076954 -259116710 - AluSq/x SINE Alu -167 145 1 282 245 0 64 chr1 23076981 23077047 -259116617 - MER4D LTR ERV1 -70 802 733 750 128 13 77 chr1 23077047 23077091 -259116573 - L1MB2 LINE L1 -7 6164 6119 1329 143 33 85 chr1 23077091 23077305 -259116359 - AluJo SINE Alu -21 291 96 1762 80 84 8 chr1 23077305 23077567 -259116097 - AluSx SINE Alu -10 302 21 1329 143 33 85 chr1 23077567 23077659 -259116005 - AluJo SINE Alu -216 96 1 750 128 13 77 chr1 23077659 23077770 -259115894 - L1MB2 LINE L1 -52 6119 6019 282 245 0 64 chr1 23077770 23077797 -259115867 - MER4D LTR ERV1 -139 733 715 342 77 0 0 chr1 23077806 23077858 -259115806 + Alu SINE Alu 1 52 -250 316 243 216 27 chr1 23078085 23078217 -259115447 + MIR SINE MIR 36 142 -120 708 184 85 99 chr1 23078217 23078305 -259115359 - MER3 DNA MER1_type 0 209 121 2018 99 6 51 chr1 23078305 23078481 -259115183 - AluSg SINE Alu -12 298 141 2098 121 0 13 chr1 23078481 23078795 -259114869 - AluY SINE Alu -1 310 1 2018 99 6 51 chr1 23078795 23078930 -259114734 - AluSg SINE Alu -169 141 1 2353 90 0 3 chr1 23078934 23079246 -259114418 - AluSx SINE Alu 0 312 2 708 184 85 99 chr1 23079246 23079364 -259114300 - MER3 DNA MER1_type -91 118 1 316 243 216 27 chr1 23079364 23079379 -259114285 + MIR SINE MIR 142 211 -51 207 407 0 0 chr1 23080326 23080412 -259113252 - MIR SINE MIR -74 134 49 437 262 182 33 chr1 23080576 23080878 -259112786 + L2 LINE L2 2882 3228 -85 261 394 81 5 chr1 23080947 23081168 -259112496 - MIR SINE MIR -2 260 23 2012 145 0 0 chr1 23082014 23082310 -259111354 - AluSx SINE Alu -15 297 2 194 175 108 133 chr1 23082314 23082434 -259111230 - MIR SINE MIR -109 153 37 325 233 111 0 chr1 23082451 23082541 -259111123 + MIR3 SINE MIR 101 200 -8 565 200 25 8 chr1 23082717 23082837 -259110827 - MIR SINE MIR -74 188 67 228 242 10 40 chr1 23083136 23083235 -259110429 + (GGCTG)n Simple_repeat Simple_repeat 2 97 0 383 255 148 6 chr1 23083814 23083978 -259109686 - MIR3 SINE MIR -52 156 21 478 305 77 37 chr1 23084019 23084222 -259109442 + MIR SINE MIR 35 244 -18 334 223 184 10 chr1 23084318 23084421 -259109243 - L2 LINE L2 0 3313 3193 241 227 320 21 chr1 23084498 23084595 -259109069 - MIR SINE MIR -58 150 25 2058 81 60 3 chr1 23085880 23086165 -259107499 - AluSg SINE Alu -9 301 1 739 232 41 52 chr1 23086956 23087150 -259106514 - MIR SINE MIR -10 252 61 1636 126 85 7 chr1 23087195 23087465 -259106199 + AluJo SINE Alu 1 291 -21 339 258 129 0 chr1 23088872 23088965 -259104699 + MIR SINE MIR 36 140 -68 186 43 0 0 chr1 23088969 23088992 -259104672 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 1581 154 4 0 chr1 23088993 23089239 -259104425 - AluJo SINE Alu -24 288 42 2172 88 0 0 chr1 23089256 23089540 -259104124 - AluSq SINE Alu -20 293 10 207 281 108 14 chr1 23089551 23089690 -259103974 - L2 LINE L2 -274 3039 2888 297 68 0 0 chr1 23089728 23089772 -259103892 + (TG)n Simple_repeat Simple_repeat 2 45 0 326 42 21 0 chr1 23089805 23089853 -259103811 + (TG)n Simple_repeat Simple_repeat 2 50 0 211 338 13 13 chr1 23089856 23089933 -259103731 - L2 LINE L2 -498 2816 2740 354 317 79 62 chr1 23090573 23090989 -259102675 + L2 LINE L2 2850 3272 0 2222 77 3 13 chr1 23091349 23091685 -259101979 - AluSq SINE Alu 0 313 1 220 251 162 0 chr1 23091833 23091958 -259101706 + MIR SINE MIR 44 185 -63 232 211 145 13 chr1 23091988 23092064 -259101600 - L2 LINE L2 -19 3294 3209 230 247 79 22 chr1 23092156 23092245 -259101419 - MIR3 SINE MIR -103 105 12 538 284 34 10 chr1 23092389 23092630 -259101034 + MIR SINE MIR 10 254 -8 262 204 0 0 chr1 23093791 23093840 -259099824 + MIR SINE MIR 109 157 -105 963 272 15 15 chr1 23093840 23094101 -259099563 - MER46C DNA MER2_type 0 338 78 1697 111 8 0 chr1 23094109 23094343 -259099321 - AluSx SINE Alu -20 292 57 204 286 0 78 chr1 23094916 23094993 -259098671 + MIR SINE MIR 28 98 -110 357 287 277 0 chr1 23095408 23095610 -259098054 + MIR SINE MIR 5 262 0 191 284 40 14 chr1 23096481 23096555 -259097109 + MER5A DNA MER1_type 96 171 -18 237 200 235 35 chr1 23096918 23097033 -259096631 - L2 LINE L2 0 3313 3176 634 247 240 17 chr1 23097118 23097414 -259096250 - L1ME1 LINE L1 -6 6160 5799 309 292 21 0 chr1 23097415 23097511 -259096153 - L2 LINE L2 -234 3038 2941 332 298 24 0 chr1 23098921 23099005 -259094659 + L2 LINE L2 3217 3302 -11 504 314 17 9 chr1 23101015 23101243 -259092421 + CT-rich Low_complexity Low_complexity 1 229 0 214 209 37 15 chr1 23101194 23101328 -259092336 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 * 230 234 39 26 chr1 23101447 23101524 -259092140 + CT-rich Low_complexity Low_complexity 2 79 0 2099 91 57 17 chr1 23102109 23102407 -259091257 - AluSx SINE Alu -2 310 1 1702 166 0 0 chr1 23103122 23103387 -259090277 + AluJo SINE Alu 34 298 -14 353 302 56 16 chr1 23103423 23103549 -259090115 - L2 LINE L2 -4 3268 3138 282 233 67 113 chr1 23103566 23103716 -259089948 - MIR SINE MIR -15 247 105 288 294 92 8 chr1 23103818 23103937 -259089727 - L2 LINE L2 -166 3106 2978 338 320 33 8 chr1 23105062 23105184 -259088480 - L3 LINE CR1 -71 1506 1382 379 337 59 25 chr1 23105311 23105513 -259088151 - MIR SINE MIR -2 260 52 324 267 48 19 chr1 23105562 23105667 -259087997 - MIR SINE MIR -132 130 23 332 345 126 34 chr1 23105694 23105900 -259087764 - L3 LINE CR1 -343 1234 1010 1190 123 0 0 chr1 23105909 23106080 -259087584 + FRAM SINE Alu 1 170 -6 961 120 0 0 chr1 23106394 23106527 -259087137 + FLAM_C SINE Alu 1 133 0 207 284 23 23 chr1 23107816 23107904 -259085760 + C-rich Low_complexity Low_complexity 2 89 0 278 229 10 0 chr1 23108195 23108291 -259085373 + (TCCA)n Simple_repeat Simple_repeat 3 99 0 634 316 35 13 chr1 23110692 23110923 -259082741 + MIR SINE MIR 22 257 -5 298 270 106 15 chr1 23110979 23111134 -259082530 + MIR3 SINE MIR 19 187 -21 208 379 73 16 chr1 23111138 23111262 -259082402 + MIR SINE MIR 2 132 -130 1865 148 0 23 chr1 23111372 23111677 -259081987 + AluJo SINE Alu 1 298 -14 240 308 86 12 chr1 23111791 23111931 -259081733 - MIR SINE MIR -67 141 27 529 337 23 0 chr1 23112077 23112252 -259081412 + L3 LINE CR1 1266 1444 -133 380 235 168 0 chr1 23112260 23112379 -259081285 - MER3 DNA MER1_type 0 209 71 256 36 0 91 chr1 23112378 23112433 -259081231 + MADE1 DNA Mariner 31 80 0 * 251 297 14 0 chr1 23112433 23112503 -259081161 - MER3 DNA MER1_type -138 71 1 423 0 0 0 chr1 23112553 23112600 -259081064 + (TG)n Simple_repeat Simple_repeat 2 48 0 303 272 65 0 chr1 23112654 23112746 -259080918 - MIR SINE MIR -48 214 117 2196 125 0 0 chr1 23113028 23113339 -259080325 - AluSx SINE Alu 0 312 2 272 304 123 34 chr1 23113858 23114062 -259079602 + L2 LINE L2 3027 3248 -24 837 321 146 40 chr1 23114958 23115047 -259078617 + L3 LINE CR1 923 1001 -576 2269 104 0 0 chr1 23115047 23115344 -259078320 + AluSx SINE Alu 1 297 -15 837 321 146 40 chr1 23115344 23115830 -259077834 + L3 LINE CR1 1001 1559 -18 344 316 156 8 chr1 23116044 23116205 -259077459 + MIR3 SINE MIR 3 182 -63 193 213 0 21 chr1 23116991 23117038 -259076626 + MIR SINE MIR 20 65 -143 290 333 27 9 chr1 23117073 23117184 -259076480 - MIR SINE MIR -55 207 95 2292 89 7 0 chr1 23117202 23117504 -259076160 + AluSq SINE Alu 1 304 -9 595 261 106 24 chr1 23117538 23117745 -259075919 + MIR SINE MIR 26 249 -13 2299 92 0 6 chr1 23117908 23118222 -259075442 - AluSx SINE Alu 0 312 1 194 274 75 82 chr1 23118757 23118903 -259074761 - L2 LINE L2 -260 3012 2868 273 271 198 10 chr1 23119437 23119533 -259074131 + MIR SINE MIR 62 175 -87 418 204 124 45 chr1 23119597 23119798 -259073866 - LTR16A1 LTR ERVL -99 358 142 196 392 11 39 chr1 23119806 23119987 -259073677 + MIR SINE MIR 86 261 -1 523 289 66 20 chr1 23120686 23120883 -259072781 + MIR SINE MIR 51 256 -6 233 276 112 0 chr1 23121363 23121461 -259072203 + MIR3 SINE MIR 48 156 -52 311 229 24 36 chr1 23121710 23121793 -259071871 + MIR SINE MIR 103 184 -78 239 344 13 18 chr1 23122911 23123061 -259070603 + MIR SINE MIR 11 243 -19 550 279 175 0 chr1 23123229 23123412 -259070252 - MIR SINE MIR -1 261 47 1987 133 0 7 chr1 23123450 23123743 -259069921 + AluJb SINE Alu 15 305 -7 219 154 26 0 chr1 23123802 23123841 -259069823 + (TGG)n Simple_repeat Simple_repeat 2 41 0 230 79 0 26 chr1 23125463 23125501 -259068163 + (TCC)n Simple_repeat Simple_repeat 2 38 0 389 293 134 18 chr1 23126144 23126308 -259067356 - MIR3 SINE MIR -3 205 23 209 267 0 0 chr1 23126527 23126572 -259067092 + (CAT)n Simple_repeat Simple_repeat 1 45 0 2203 104 3 0 chr1 23126660 23126957 -259066707 + AluSx SINE Alu 1 298 -14 2043 132 7 0 chr1 23126968 23127271 -259066393 + AluSq SINE Alu 1 305 -8 669 292 49 5 chr1 23127426 23127611 -259066053 - MIR SINE MIR -62 200 8 1251 178 28 91 chr1 23127615 23127935 -259065729 + AluJo SINE Alu 3 302 0 303 311 22 22 chr1 23128326 23128461 -259065203 - MLT1K LTR MaLR -6 582 448 397 312 64 23 chr1 23128545 23128763 -259064901 - MLT1K LTR MaLR -359 229 3 507 263 63 23 chr1 23130278 23130453 -259063211 - MIR SINE MIR -72 190 9 835 160 8 0 chr1 23131142 23131273 -259062391 - FLAM_C SINE Alu -1 132 1 602 171 111 0 chr1 23131280 23131397 -259062267 - FLAM_A SINE Alu -3 130 1 2372 77 7 3 chr1 23131597 23131907 -259061757 - AluY SINE Alu 0 311 1 2082 101 50 0 chr1 23131907 23132205 -259061459 - AluSq SINE Alu 0 313 1 526 290 13 18 chr1 23132319 23132384 -259061280 - L1ME LINE L1 -327 5794 5730 2264 112 3 3 chr1 23132384 23132696 -259060968 - AluSx SINE Alu 0 312 1 526 290 13 18 chr1 23132696 23132854 -259060810 - L1ME LINE L1 -391 5730 5572 820 102 79 31 chr1 23133495 23133622 -259060042 - FLAM_C SINE Alu 0 133 1 252 273 41 41 chr1 23133641 23133762 -259059902 + L2 LINE L2 2927 3047 -225 * 465 336 0 8 chr1 23133740 23133871 -259059793 - L2 LINE L2 0 3272 3143 496 313 60 34 chr1 23133980 23134213 -259059451 + L2 LINE L2 3022 3260 -12 2120 98 21 0 chr1 23134213 23134499 -259059165 + AluY SINE Alu 1 292 -19 281 360 59 20 chr1 23135492 23135645 -259058019 - L2 LINE L2 -683 2631 2473 2109 123 0 3 chr1 23135648 23135948 -259057716 + AluSg SINE Alu 1 299 -11 996 289 56 19 chr1 23135981 23136358 -259057306 - LTR16C LTR ERVL -100 391 1 1421 319 161 22 chr1 23136358 23137513 -259056151 - L2 LINE L2 -930 2384 1070 1287 306 43 20 chr1 23138048 23138277 -259055387 - L2 LINE L2 0 3313 3091 2251 95 3 0 chr1 23138277 23138582 -259055082 + AluSx SINE Alu 1 306 -6 1287 306 43 20 chr1 23138582 23139038 -259054626 - L2 LINE L2 -222 3091 2603 360 254 108 75 chr1 23141028 23141186 -259052478 + MIR SINE MIR 4 170 -92 2228 53 3 30 chr1 23141186 23141531 -259052133 - AluY SINE Alu 0 311 1 360 254 108 75 chr1 23141531 23141576 -259052088 + MIR SINE MIR 170 212 -50 795 236 95 21 chr1 23143566 23143718 -259049946 + MIR SINE MIR 4 182 -80 2388 77 0 0 chr1 23143718 23144016 -259049648 + AluSx SINE Alu 1 298 -14 795 236 95 21 chr1 23144016 23144104 -259049560 + MIR SINE MIR 182 262 0 476 258 161 0 chr1 23144134 23144289 -259049375 - MER104 DNA MER2_type 0 180 1 2226 82 3 3 chr1 23145013 23145305 -259048359 + AluSg SINE Alu 1 292 -18 282 286 9 67 chr1 23145306 23145411 -259048253 + MIR SINE MIR 25 123 -139 233 250 216 0 chr1 23145411 23145527 -259048137 - MER104 DNA Tc2 -39 141 1 234 269 194 0 chr1 23146438 23146531 -259047133 - L2 LINE L2 0 3272 3162 274 361 57 0 chr1 23146531 23146653 -259047011 - L2 LINE L2 0 3272 3144 415 204 11 0 chr1 23147790 23147878 -259045786 - MER3 DNA MER1_type -104 105 17 401 230 11 0 chr1 23147886 23147973 -259045691 + MIR SINE MIR 175 262 0 2309 98 0 0 chr1 23147977 23148272 -259045392 - AluSx SINE Alu -17 295 1 242 397 22 15 chr1 23149084 23149220 -259044444 + MIR SINE MIR 18 154 -108 1742 143 11 7 chr1 23149316 23149595 -259044069 + AluSx SINE Alu 6 308 0 208 0 0 0 chr1 23149595 23149618 -259044046 + (TAAA)n Simple_repeat Simple_repeat 2 176 0 2261 69 0 0 chr1 23149719 23150021 -259043643 - AluSg SINE Alu 0 304 3 237 309 21 0 chr1 23150041 23150135 -259043529 - MER113 DNA MER1_type? -409 112 17 1192 213 29 0 chr1 23150141 23150381 -259043283 - MIR SINE MIR -10 252 6 416 270 63 69 chr1 23150997 23151051 -259042613 - MER91B DNA MER1_type 0 190 137 1960 119 42 0 chr1 23151051 23151336 -259042328 + AluSx SINE Alu 1 297 -15 416 270 63 69 chr1 23151336 23151470 -259042194 - MER91B DNA MER1_type -53 137 3 341 192 283 0 chr1 23152353 23152452 -259041212 + MIR3 SINE MIR 29 155 -53 259 304 107 0 chr1 23153487 23153599 -259040065 + MIR SINE MIR 23 146 -116 285 296 23 29 chr1 23153964 23154136 -259039528 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 624 144 0 0 chr1 23154194 23154284 -259039380 + AluJ/FLAM SINE Alu 1 90 -222 1672 133 4 12 chr1 23154284 23154380 -259039284 + AluSx SINE Alu 40 135 -183 2081 107 17 3 chr1 23154380 23154680 -259038984 + AluY SINE Alu 1 304 -7 1672 133 4 12 chr1 23154680 23154864 -259038800 + AluSx SINE Alu 135 318 0 723 245 64 60 chr1 23156698 23156821 -259036843 + MIR SINE MIR 1 122 -140 2260 109 0 0 chr1 23156821 23157133 -259036531 - AluSx SINE Alu 0 312 1 723 245 64 60 chr1 23157133 23157258 -259036406 + MIR SINE MIR 122 250 -12 2106 68 14 37 chr1 23157398 23157694 -259035970 + AluSx SINE Alu 1 289 -23 358 277 155 14 chr1 23158285 23158365 -259035299 + MIR SINE MIR 86 153 -109 2213 98 3 3 chr1 23158365 23158660 -259035004 + AluSq SINE Alu 3 297 -16 358 277 155 14 chr1 23158660 23158727 -259034937 + MIR SINE MIR 153 254 -8 264 294 1 60 chr1 23158745 23158837 -259034827 + MIR SINE MIR 10 97 -111 2341 95 0 0 chr1 23158978 23159283 -259034381 - AluSx SINE Alu -7 305 1 668 195 0 0 chr1 23159698 23159811 -259033853 + FAM SINE Alu 2 114 -71 270 226 24 36 chr1 23159853 23159937 -259033727 + (TGAG)n Simple_repeat Simple_repeat 4 86 0 414 280 113 36 chr1 23160822 23160990 -259032674 + MIR SINE MIR 15 195 -67 226 314 12 12 chr1 23161967 23162053 -259031611 + CT-rich Low_complexity Low_complexity 5 90 0 243 79 0 0 chr1 23162698 23162736 -259030928 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 307 282 122 50 chr1 23162736 23162917 -259030747 - L2 LINE L2 -14 3299 3106 2297 90 0 10 chr1 23164261 23164571 -259029093 - AluSq SINE Alu -6 307 1 222 306 36 27 chr1 23165682 23165793 -259027871 + MIR SINE MIR 41 152 -56 410 283 110 6 chr1 23166210 23166389 -259027275 + MIR SINE MIR 47 244 -18 353 252 49 16 chr1 23167218 23167341 -259026323 + MIR3 SINE MIR 12 138 -70 723 208 73 62 chr1 23167563 23167755 -259025909 + MIR SINE MIR 7 200 -62 2018 110 4 0 chr1 23167755 23168036 -259025628 - AluSx SINE Alu -21 291 10 288 70 23 0 chr1 23168036 23168079 -259025585 - Alu SINE Alu -257 44 1 241 204 0 0 chr1 23168048 23168097 -259025567 - Alu SINE Alu -137 166 118 * 2203 88 3 14 chr1 23168163 23168458 -259025206 + AluSp SINE Alu 1 292 -21 909 127 0 8 chr1 23168468 23168602 -259025062 + AluJo/FLAM SINE Alu 1 133 -179 1607 186 49 0 chr1 23168604 23168889 -259024775 + AluJo SINE Alu 1 299 -13 2185 116 10 0 chr1 23168889 23169192 -259024472 + AluSx SINE Alu 1 306 -6 192 293 43 112 chr1 23169202 23169318 -259024346 + MIR SINE MIR 152 259 -3 444 224 47 9 chr1 23169546 23169653 -259024011 + MER81 DNA DNA 2 112 -2 189 0 0 0 chr1 23169676 23169697 -259023967 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1219 214 79 6 chr1 23169706 23170047 -259023617 - Charlie4a DNA MER1_type -115 393 28 24 32 0 0 chr1 23171712 23171743 -259021921 + AT_rich Low_complexity Low_complexity 1 31 0 390 236 165 16 chr1 23172850 23172977 -259020687 - MIR SINE MIR -88 174 29 333 277 216 0 chr1 23173578 23173726 -259019938 - MIR SINE MIR -62 200 21 2003 120 3 0 chr1 23173773 23174056 -259019608 - AluJb SINE Alu -28 284 1 416 196 83 83 chr1 23174057 23174190 -259019474 - MIR SINE MIR -19 243 111 504 278 73 16 chr1 23174199 23174390 -259019274 - L2 LINE L2 -1 3312 3111 2397 44 40 0 chr1 23174420 23174717 -259018947 - AluYa5 SINE Alu -1 310 2 914 183 33 64 chr1 23174727 23174807 -259018857 - L1MB3 LINE L1 -1 6182 6101 3041 101 31 0 chr1 23174807 23175221 -259018443 + MSTA LTR MaLR 1 427 -1 914 183 33 64 chr1 23175221 23175412 -259018252 - L1MB3 LINE L1 -82 6101 5918 37 69 0 0 chr1 23175413 23175485 -259018179 + AT_rich Low_complexity Low_complexity 1 72 0 425 17 33 0 chr1 23175485 23175545 -259018119 - MSTA LTR MaLR -46 382 321 2220 83 10 0 chr1 23175591 23175880 -259017784 - AluSp SINE Alu -21 292 1 421 261 71 78 chr1 23175969 23176252 -259017412 - L2 LINE L2 -338 2976 2696 1555 132 75 233 chr1 23176259 23176660 -259017004 + L1MC3 LINE L1 7114 7577 -208 1112 67 0 0 chr1 23176660 23176795 -259016869 + AluSp SINE Alu 1 135 -178 2076 109 0 14 chr1 23176795 23177088 -259016576 + AluSx SINE Alu 1 289 -23 180 0 0 0 chr1 23177094 23177114 -259016550 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1555 132 75 233 chr1 23177114 23177356 -259016308 + L1MC3 LINE L1 7581 7775 -10 1606 156 13 53 chr1 23177356 23177657 -259016007 + AluJb SINE Alu 24 312 0 1011 273 174 9 chr1 23177694 23178244 -259015420 - L2 LINE L2 -655 2659 2019 476 200 26 43 chr1 23178425 23178540 -259015124 + MIR3 SINE MIR 60 172 -36 382 355 16 0 chr1 23179192 23179313 -259014351 - MIR SINE MIR -1 261 139 30 0 0 0 chr1 23179313 23179343 -259014321 + AT_rich Low_complexity Low_complexity 1 30 0 767 164 23 0 chr1 23179343 23179471 -259014193 - FLAM_C SINE Alu 0 133 3 295 264 24 8 chr1 23179751 23179876 -259013788 + (TG)n Simple_repeat Simple_repeat 1 127 0 26 0 0 0 chr1 23180280 23180306 -259013358 + GC_rich Low_complexity Low_complexity 1 26 0 674 273 42 2 chr1 23180563 23180750 -259012914 + MIR SINE MIR 5 197 -42 2133 82 10 3 chr1 23180799 23181092 -259012572 + AluSx SINE Alu 1 295 -17 451 207 57 33 chr1 23181121 23181370 -259012294 + MLT1L LTR MaLR 309 615 0 218 254 75 0 chr1 23181370 23181437 -259012227 + MIR SINE MIR 169 240 -22 2317 84 0 0 chr1 23181655 23181954 -259011710 - AluSc SINE Alu -10 299 1 361 315 56 39 chr1 23181958 23182136 -259011528 - MIR SINE MIR -17 245 65 792 311 100 26 chr1 23182990 23183379 -259010285 + L2 LINE L2 2893 3310 -3 208 329 27 0 chr1 23183377 23183450 -259010214 + MIR3 SINE MIR 83 157 -51 * 326 286 18 95 chr1 23183530 23183623 -259010041 + MIR SINE MIR 102 178 -84 2265 102 0 10 chr1 23183623 23183928 -259009736 + AluSg SINE Alu 1 302 -8 326 286 18 95 chr1 23183928 23184002 -259009662 + MIR SINE MIR 178 256 -6 1601 110 136 15 chr1 23184151 23184423 -259009241 + AluSx SINE Alu 1 305 -7 262 214 0 18 chr1 23184564 23184620 -259009044 + MER69 DNA AcHobo 8 62 -115 2350 93 0 0 chr1 23184637 23184948 -259008716 - AluY SINE Alu 0 311 1 624 103 0 10 chr1 23184948 23185038 -259008626 - AluSg/x SINE Alu -5 304 214 1965 85 4 4 chr1 23185038 23185298 -259008366 - AluSx SINE Alu -52 260 1 618 119 9 0 chr1 23185334 23185443 -259008221 + L1MB2 LINE L1 6019 6128 -43 572 174 11 0 chr1 23185445 23185537 -259008127 + AluJ/FLAM SINE Alu 1 93 -219 1486 116 91 8 chr1 23185537 23185778 -259007886 + AluSx SINE Alu 21 281 -31 2343 101 0 0 chr1 23185884 23186190 -259007474 + AluSx SINE Alu 1 306 -6 2770 159 31 49 chr1 23186319 23186392 -259007272 + MER41B LTR ERV1 1 74 -561 1964 94 0 4 chr1 23186392 23186648 -259007016 - AluY SINE Alu -56 255 1 2770 159 31 49 chr1 23186648 23187183 -259006481 + MER41B LTR ERV1 74 598 -37 2378 87 3 0 chr1 23187183 23187495 -259006169 - AluSq SINE Alu 0 313 1 2353 99 0 0 chr1 23187495 23187799 -259005865 - AluSq SINE Alu -9 304 1 953 172 5 61 chr1 23187860 23188058 -259005606 - AluJo SINE Alu -125 187 1 283 209 330 17 chr1 23188058 23188173 -259005491 - L2 LINE L2 -533 2781 2631 2914 132 7 64 chr1 23188205 23188782 -259004882 - MER4B LTR ERV1 -37 573 31 2254 87 0 10 chr1 23188782 23189082 -259004582 - AluSq SINE Alu -16 297 1 2914 132 7 64 chr1 23189082 23189112 -259004552 - MER4B LTR ERV1 -579 31 1 206 188 58 101 chr1 23189112 23189181 -259004483 - L2 LINE L2 -679 2635 2570 1647 117 0 43 chr1 23189192 23189449 -259004215 - AluSx SINE Alu -10 302 57 275 73 24 0 chr1 23189456 23189497 -259004167 + AluSg/x SINE Alu 112 153 -147 2478 262 71 22 chr1 23189541 23189881 -259003783 - L2 LINE L2 -767 2547 2225 4385 54 22 30 chr1 23189881 23189960 -259003704 + LTR10C LTR ERV1 1 79 -512 2026 93 25 4 chr1 23189960 23190239 -259003425 + AluSp SINE Alu 3 287 -26 4385 54 22 30 chr1 23190239 23190468 -259003196 + LTR10C LTR ERV1 79 308 -283 2306 79 7 13 chr1 23190468 23190773 -259002891 - AluSp SINE Alu -10 303 1 4385 54 22 30 chr1 23190773 23191012 -259002652 + LTR10C LTR ERV1 308 546 -45 2321 82 0 3 chr1 23191012 23191315 -259002349 - AluSc SINE Alu -7 302 1 4385 54 22 30 chr1 23191315 23191361 -259002303 + LTR10C LTR ERV1 546 591 0 2478 262 71 22 chr1 23191361 23191865 -259001799 - L2 LINE L2 -1089 2225 1658 2012 131 7 0 chr1 23191865 23192163 -259001501 - AluJb SINE Alu -12 300 1 2298 78 3 57 chr1 23192441 23192539 -259001125 + MER41B LTR ERV1 1 103 -532 1913 123 14 0 chr1 23192539 23192823 -259000841 - AluSg SINE Alu -22 288 1 2298 78 3 57 chr1 23192823 23193110 -259000554 + MER41B LTR ERV1 103 365 -270 2214 90 0 10 chr1 23193110 23193409 -259000255 + AluSq SINE Alu 1 296 -17 2275 61 7 7 chr1 23193506 23193863 -258999801 - AluY SINE Alu 0 358 2 219 355 72 14 chr1 23193926 23194064 -258999600 + L2 LINE L2 2906 3051 -221 2164 91 3 0 chr1 23194180 23194478 -258999186 - AluSp SINE Alu -14 299 1 23 0 0 0 chr1 23195440 23195463 -258998201 + GC_rich Low_complexity Low_complexity 1 23 0 1702 139 47 0 chr1 23196832 23197106 -258996558 - AluSx SINE Alu -25 287 1 260 160 0 147 chr1 23197072 23197117 -258996547 - AluSg/x SINE Alu -133 167 158 2156 88 0 69 chr1 23197117 23197436 -258996228 - AluSp SINE Alu -16 297 1 260 160 0 147 chr1 23197436 23197465 -258996199 - AluSg/x SINE Alu -142 158 126 753 136 104 0 chr1 23197933 23198058 -258995606 - AluSg/x SINE Alu -18 294 157 1599 166 11 19 chr1 23197947 23198218 -258995446 - AluSx SINE Alu -43 269 1 866 157 16 94 chr1 23198373 23198564 -258995100 - AluSg/x SINE Alu 0 312 137 2145 106 7 3 chr1 23198678 23198970 -258994694 - AluSx SINE Alu -19 293 1 1164 224 75 8 chr1 23199305 23199573 -258994091 + MER21B LTR ERV1 12 297 -566 1878 102 0 23 chr1 23199573 23199838 -258993826 - AluSg1 SINE Alu -11 298 40 1927 159 0 3 chr1 23199850 23200146 -258993518 - AluSx SINE Alu -15 297 3 243 88 0 0 chr1 23200447 23200481 -258993183 + (TCCC)n Simple_repeat Simple_repeat 1 34 0 2179 113 0 3 chr1 23200481 23200772 -258992892 - AluSp SINE Alu -23 290 1 2592 59 0 0 chr1 23201415 23201718 -258991946 - AluSg SINE Alu -7 303 1 2027 133 3 16 chr1 23202011 23202320 -258991344 - AluSx SINE Alu -7 305 1 950 185 5 54 chr1 23202511 23202695 -258990969 - FAM SINE Alu 0 175 1 864 163 137 26 chr1 23202819 23203009 -258990655 + AluJo SINE Alu 86 296 -16 2236 94 10 7 chr1 23203184 23203491 -258990173 - AluSp SINE Alu -5 308 1 2153 92 9 19 chr1 23203554 23203870 -258989794 - AluSq SINE Alu 0 313 1 3217 192 135 12 chr1 23204009 23204846 -258988818 - L1MC4 LINE L1 -329 7713 6774 1975 210 106 90 chr1 23204847 23205098 -258988566 - L1MC4a LINE L1 -1385 6423 6177 2194 108 0 32 chr1 23205098 23205414 -258988250 - AluSx SINE Alu -6 306 1 1975 210 106 90 chr1 23205414 23205510 -258988154 - L1MC4a LINE L1 -1631 6177 6084 342 0 0 0 chr1 23205510 23205548 -258988116 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1943 117 44 0 chr1 23205548 23205822 -258987842 - AluSg SINE Alu -24 286 1 1975 210 106 90 chr1 23205822 23206079 -258987585 - L1MC4a LINE L1 -1724 6084 5798 351 0 0 0 chr1 23206079 23206118 -258987546 + (TG)n Simple_repeat Simple_repeat 2 40 0 1975 210 106 90 chr1 23206118 23206334 -258987330 - L1MC4a LINE L1 -2010 5798 5587 553 228 44 0 chr1 23206338 23206474 -258987190 - L1MC4a LINE L1 -2260 5548 5407 231 36 0 0 chr1 23206678 23206706 -258986958 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 24 67 0 0 chr1 23206998 23207043 -258986621 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr1 23207083 23207115 -258986549 + AT_rich Low_complexity Low_complexity 1 32 0 2009 127 19 13 chr1 23207798 23208105 -258985559 - AluSx SINE Alu -3 309 1 2266 81 11 0 chr1 23208110 23208420 -258985244 - AluSp SINE Alu 0 313 1 805 180 8 0 chr1 23208425 23208553 -258985111 - FLAM_C SINE Alu -13 130 2 276 206 16 16 chr1 23208670 23208725 -258984939 - LTR41 LTR ERVL -2 771 714 1781 163 33 3 chr1 23208725 23209025 -258984639 - AluJb SINE Alu -3 309 1 1023 235 208 86 chr1 23209146 23209819 -258983845 - LTR41 LTR ERVL -12 761 7 2183 123 0 0 chr1 23210123 23210423 -258983241 - AluSg SINE Alu -10 300 1 2151 125 10 0 chr1 23210455 23210759 -258982905 - AluSx SINE Alu -5 307 1 1540 151 92 11 chr1 23210762 23211034 -258982630 - AluSx SINE Alu -18 294 1 24 0 0 0 chr1 23211322 23211346 -258982318 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 23211400 23211421 -258982243 + AT_rich Low_complexity Low_complexity 1 21 0 686 149 9 9 chr1 23212102 23212209 -258981455 + L1PB4 LINE L1 6037 6143 -13 2178 101 3 0 chr1 23212257 23212543 -258981121 - AluSg SINE Alu 0 310 24 2324 91 0 29 chr1 23213405 23213713 -258979951 - AluSp SINE Alu -14 299 1 1744 236 242 44 chr1 23213713 23214401 -258979263 - L2 LINE L2 -12 3301 2751 1693 205 0 0 chr1 23214401 23214708 -258978956 + AluJo SINE Alu 1 307 -5 1744 236 242 44 chr1 23214708 23215085 -258978579 - L2 LINE L2 -562 2751 2005 234 171 0 0 chr1 23215140 23215181 -258978483 + Alu SINE Alu 62 102 -64 2017 147 3 0 chr1 23215375 23215675 -258977989 - AluSx SINE Alu -11 301 1 2541 72 0 0 chr1 23216431 23216737 -258976927 + AluSq SINE Alu 1 306 -7 1286 143 219 8 chr1 23217849 23218086 -258975578 - AluSx SINE Alu -15 287 1 1145 142 205 35 chr1 23218717 23218971 -258974693 - AluJb SINE Alu -5 307 11 264 59 0 0 chr1 23218991 23219025 -258974639 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2403 93 3 3 chr1 23219502 23219814 -258973850 - AluSq SINE Alu -1 312 1 2179 125 10 10 chr1 23219837 23220149 -258973515 - AluSx SINE Alu 0 312 1 361 248 113 7 chr1 23220169 23220310 -258973354 - Charlie4 DNA MER1_type -1701 260 105 216 250 144 0 chr1 23220324 23220428 -258973236 + L2 LINE L2 700 818 -2496 344 228 97 97 chr1 23220466 23220672 -258972992 - L1ME3A LINE L1 0 6170 5965 216 342 54 18 chr1 23220751 23220862 -258972802 + L2 LINE L2 1075 1189 -2125 23 0 0 0 chr1 23221280 23221303 -258972361 + AT_rich Low_complexity Low_complexity 1 23 0 260 53 26 0 chr1 23221694 23221732 -258971932 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2336 108 0 13 chr1 23221736 23222052 -258971612 - AluSx SINE Alu 0 312 1 1565 184 18 7 chr1 23222332 23222615 -258971049 - AluJo SINE Alu -26 286 1 235 290 100 50 chr1 23222790 23223090 -258970574 - HAL1 LINE L1 -821 1686 1372 348 25 0 0 chr1 23223130 23223170 -258970494 - U7 snRNA snRNA -23 40 1 619 272 110 35 chr1 23223210 23223637 -258970027 - L1MEd LINE L1 -4919 1200 742 2403 144 60 70 chr1 23223958 23224098 -258969566 + L1MA7 LINE L1 5769 5909 -382 2161 98 7 3 chr1 23224098 23224394 -258969270 + AluSp SINE Alu 1 297 -16 2403 144 60 70 chr1 23224394 23224767 -258968897 + L1MA7 LINE L1 5909 6277 -14 453 124 57 48 chr1 23224767 23224872 -258968792 - AluSp/q SINE Alu -3 310 205 1428 137 92 92 chr1 23225043 23225378 -258968286 + L1MA7 LINE L1 5934 6271 -20 2267 114 7 0 chr1 23225378 23225684 -258967980 - AluSq SINE Alu -5 308 1 1428 137 92 92 chr1 23225684 23225705 -258967959 + L1MA7 LINE L1 6270 6290 -1 256 295 74 42 chr1 23226026 23226121 -258967543 + L2 LINE L2 3176 3273 -40 929 184 94 25 chr1 23226216 23226263 -258967401 + AluJo SINE Alu 85 127 -185 2171 117 0 7 chr1 23226263 23226563 -258967101 + AluSq SINE Alu 1 298 -15 2319 88 0 0 chr1 23226563 23226870 -258966794 + AluSq SINE Alu 1 307 0 929 184 94 25 chr1 23226870 23227021 -258966643 + AluJo SINE Alu 126 299 -13 343 198 125 0 chr1 23227623 23227719 -258965945 - L1MA9 LINE L1 0 6312 6205 23 0 0 0 chr1 23228501 23228524 -258965140 + AT_rich Low_complexity Low_complexity 1 23 0 874 207 29 29 chr1 23228640 23228814 -258964850 - AluJ SINE Alu -21 291 118 1808 153 0 55 chr1 23228835 23229003 -258964661 - AluSx SINE Alu -22 290 145 1957 135 32 26 chr1 23229003 23229314 -258964350 - AluSq SINE Alu 0 313 1 1808 153 0 55 chr1 23229314 23229452 -258964212 - AluSx SINE Alu -167 145 1 814 154 8 8 chr1 23229478 23229601 -258964063 - AluJ SINE Alu -187 125 3 24 53 0 0 chr1 23229615 23229653 -258964011 + AT_rich Low_complexity Low_complexity 1 38 0 1624 189 6 22 chr1 23230487 23230804 -258962860 - AluJo SINE Alu 0 312 1 979 182 6 0 chr1 23230969 23231134 -258962530 + AluJb SINE Alu 140 305 -7 2351 95 0 3 chr1 23231491 23231787 -258961877 - AluSx SINE Alu -17 295 1 870 224 53 33 chr1 23231947 23232461 -258961203 - Charlie2 DNA MER1_type -37 2825 2217 437 242 91 42 chr1 23232462 23232627 -258961037 - Charlie2 DNA MER1_type -2544 238 66 1718 128 0 4 chr1 23232629 23232871 -258960793 - AluSx SINE Alu -17 295 55 1965 115 49 0 chr1 23233036 23233322 -258960342 - AluSx SINE Alu -12 300 1 2018 134 3 3 chr1 23233457 23233756 -258959908 + AluSx SINE Alu 1 299 -13 2276 110 7 0 chr1 23233963 23234263 -258959401 + AluSc SINE Alu 1 302 -7 1320 128 59 0 chr1 23234318 23234521 -258959143 - AluSg/x SINE Alu -9 301 87 186 43 0 0 chr1 23234553 23234576 -258959088 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1768 158 30 7 chr1 23234576 23234863 -258958801 - AluSx SINE Alu -15 297 1 2300 107 0 0 chr1 23235717 23236016 -258957648 - AluSg1 SINE Alu -7 302 4 2208 108 0 3 chr1 23239256 23239553 -258954111 - AluSp SINE Alu -17 296 1 516 249 61 56 chr1 23239627 23239824 -258953840 - MIR SINE MIR -45 217 20 2105 115 20 3 chr1 23241491 23241786 -258951878 - AluSx SINE Alu -12 300 1 1898 151 34 0 chr1 23242169 23242460 -258951204 - AluJb SINE Alu -11 301 1 1618 196 18 0 chr1 23242464 23242750 -258950914 - AluJo SINE Alu -10 302 12 693 170 121 21 chr1 23244046 23244187 -258949477 + FRAM SINE Alu 1 155 -11 2062 129 0 25 chr1 23244194 23244512 -258949152 + AluSx SINE Alu 3 312 0 1844 99 80 56 chr1 23245111 23245413 -258948251 - AluSq SINE Alu -4 309 1 860 146 0 29 chr1 23245417 23245554 -258948110 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr1 23245566 23245589 -258948075 + AT_rich Low_complexity Low_complexity 1 23 0 2039 96 12 78 chr1 23245703 23246037 -258947627 - AluSx SINE Alu 0 312 1 1976 104 4 0 chr1 23246203 23246463 -258947201 + AluSg SINE Alu 38 298 -12 247 256 48 56 chr1 23246866 23246991 -258946673 - L1ME LINE L1 -430 5691 5568 1648 135 81 0 chr1 23247060 23247344 -258946320 - AluSg SINE Alu 0 306 2 236 91 23 0 chr1 23247571 23247615 -258946049 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1806 163 0 3 chr1 23247618 23247900 -258945764 - AluJb SINE Alu -31 281 1 2238 68 43 0 chr1 23247995 23248274 -258945390 - AluY SINE Alu -20 291 1 3642 166 63 19 chr1 23248431 23249131 -258944533 + MER44D DNA MER2_type 2 604 -1 669 205 100 3 chr1 23249937 23250158 -258943506 - AluJo SINE Alu -6 306 2 1378 197 47 11 chr1 23250460 23250739 -258942925 + AluJo SINE Alu 3 291 -21 1643 188 0 23 chr1 23251611 23251920 -258941744 + AluJb SINE Alu 1 302 -10 273 230 0 0 chr1 23251920 23251994 -258941670 + GA-rich Low_complexity Low_complexity 1 74 0 2240 114 3 0 chr1 23252093 23252392 -258941272 + AluSx SINE Alu 1 300 -12 405 215 34 96 chr1 23252576 23252634 -258941030 - MIR SINE MIR -12 250 190 1786 171 7 3 chr1 23252634 23252939 -258940725 - AluSx SINE Alu -2 310 5 405 215 34 96 chr1 23252939 23253057 -258940607 - MIR SINE MIR -72 190 85 759 304 129 41 chr1 23253276 23253940 -258939724 - HAL1 LINE L1 -1707 800 78 1406 173 102 19 chr1 23253940 23254206 -258939458 + AluJo SINE Alu 6 293 -19 25 75 0 0 chr1 23255014 23255067 -258938597 + AT_rich Low_complexity Low_complexity 1 53 0 268 279 23 0 chr1 23255475 23255561 -258938103 - L1MC/D LINE L1 -1949 5859 5772 1358 161 104 8 chr1 23255835 23256084 -258937580 + AluJo SINE Alu 1 273 -39 588 110 12 0 chr1 23256184 23256266 -258937398 + FRAM SINE Alu 63 145 -31 2327 105 0 10 chr1 23256280 23256593 -258937071 - AluSg SINE Alu 0 310 1 35 0 0 0 chr1 23256600 23256635 -258937029 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr1 23256661 23256689 -258936975 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2027 130 7 0 chr1 23256692 23256976 -258936688 - AluSg SINE Alu -24 286 1 1631 180 11 7 chr1 23256985 23257313 -258936351 - AluSx SINE Alu 0 329 1 191 211 0 0 chr1 23257319 23257357 -258936307 + MIR SINE MIR 47 84 -178 336 272 10 19 chr1 23260146 23260249 -258933415 + CT-rich Low_complexity Low_complexity 4 105 0 483 252 57 46 chr1 23260485 23260666 -258932998 - L1ME3A LINE L1 -222 5948 5767 1409 208 49 14 chr1 23261173 23261457 -258932207 + AluJo SINE Alu 1 294 -18 370 321 111 55 chr1 23261875 23262255 -258931409 - L2 LINE L2 0 3272 2872 892 170 101 37 chr1 23262256 23262310 -258931354 + MER3 DNA MER1_type 1 66 -143 259 311 133 7 chr1 23262310 23262461 -258931203 - MER3 DNA MER1_type 0 209 40 540 310 43 17 chr1 23262475 23262775 -258930889 - L2 LINE L2 -470 2844 2537 2238 119 0 6 chr1 23263799 23264111 -258929553 - AluSg SINE Alu 0 310 1 2109 113 27 3 chr1 23264111 23264403 -258929261 - AluSg SINE Alu -11 299 1 1608 85 0 5 chr1 23265197 23265409 -258928255 - AluY SINE Alu -18 293 83 2609 74 0 0 chr1 23266412 23266722 -258926942 - AluY SINE Alu -1 310 1 2171 114 7 3 chr1 23267639 23267947 -258925717 - AluSp SINE Alu -4 309 1 318 264 33 66 chr1 23267985 23268197 -258925467 - L1MC5 LINE L1 -522 7439 7235 1304 129 55 0 chr1 23268396 23268598 -258925066 - AluJo SINE Alu -30 282 70 2484 77 0 6 chr1 23269502 23269813 -258923851 - AluSg1 SINE Alu 0 309 1 222 338 0 0 chr1 23271425 23271493 -258922171 + L2 LINE L2 3231 3298 -15 1984 149 0 3 chr1 23272460 23272748 -258920916 - AluSx SINE Alu -21 291 5 2245 114 3 3 chr1 23272765 23273071 -258920593 - AluSp SINE Alu -7 306 1 1938 164 3 19 chr1 23273275 23273592 -258920072 + AluJo SINE Alu 1 312 0 279 91 0 0 chr1 23275243 23275287 -258918377 - FLAM_A SINE Alu 0 133 90 2347 69 0 0 chr1 23275478 23275780 -258917884 - AluSg SINE Alu 0 304 3 261 192 55 27 chr1 23275800 23275873 -258917791 - MER113 DNA MER1_type? -409 112 38 1131 209 26 0 chr1 23275910 23276140 -258917524 - MIR SINE MIR -21 241 6 235 236 18 0 chr1 23276757 23276812 -258916852 - MER91 DNA MER1_type 0 196 141 1928 141 39 0 chr1 23276812 23277096 -258916568 + AluSx SINE Alu 1 295 -17 2471 169 121 28 chr1 23277209 23277461 -258916203 + LTR28 LTR ERV1 1 228 -792 2314 110 0 0 chr1 23277461 23277762 -258915902 - AluSg SINE Alu -9 301 1 2471 169 121 28 chr1 23277762 23278037 -258915627 + LTR28 LTR ERV1 228 577 -443 383 206 59 81 chr1 23278084 23278220 -258915444 + LTR27 LTR ERV1 502 634 -2 354 281 186 0 chr1 23278224 23278445 -258915219 - L2 LINE L2 -1241 2073 1812 1013 170 0 55 chr1 23278449 23278674 -258914990 + MER33 DNA MER1_type 1 200 -82 1859 145 3 48 chr1 23278679 23278990 -258914674 - AluJb SINE Alu -15 297 1 1239 134 0 0 chr1 23279005 23279177 -258914487 - AluSg/x SINE Alu -8 304 133 241 162 14 14 chr1 23279179 23279253 -258914411 + MER33 DNA MER1_type 211 284 -40 777 157 7 189 chr1 23279263 23279325 -258914339 + AluJb SINE Alu 64 136 -176 2482 73 0 0 chr1 23279325 23279626 -258914038 + AluY SINE Alu 11 311 0 777 157 7 189 chr1 23279626 23279843 -258913821 + AluJb SINE Alu 136 292 -20 1668 193 24 3 chr1 23279845 23280141 -258913523 + AluJb SINE Alu 1 302 -10 2179 112 0 0 chr1 23280141 23280427 -258913237 + AluSg SINE Alu 1 286 -24 198 0 0 0 chr1 23280441 23280463 -258913201 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2423 101 0 0 chr1 23280523 23280829 -258912835 + AluSx SINE Alu 1 306 -6 381 178 0 27 chr1 23280958 23281031 -258912633 + MER41C LTR ERV1 1 71 -483 2001 86 4 0 chr1 23281031 23281286 -258912378 - AluSx SINE Alu -56 256 1 767 172 16 0 chr1 23281286 23281408 -258912256 - AluJb SINE Alu -187 125 2 2035 115 3 14 chr1 23281679 23281974 -258911690 + AluSx SINE Alu 12 303 -9 181 279 33 33 chr1 23282047 23282108 -258911556 + MIR SINE MIR 25 85 -177 435 229 0 10 chr1 23282299 23282395 -258911269 + MIR SINE MIR 102 196 -66 1908 150 0 7 chr1 23282404 23282691 -258910973 + AluJb SINE Alu 3 287 -25 597 113 0 62 chr1 23282703 23282800 -258910864 + AluSg/x SINE Alu 88 178 -132 744 115 0 64 chr1 23282902 23283058 -258910606 + AluSg/x SINE Alu 167 312 0 755 212 20 0 chr1 23283102 23283248 -258910416 - AluJb SINE Alu -100 212 64 2272 88 0 29 chr1 23283279 23283587 -258910077 - AluSg SINE Alu -11 299 1 282 100 0 0 chr1 23283604 23283644 -258910020 - FLAM SINE Alu -1 132 93 2356 92 0 0 chr1 23283889 23284183 -258909481 + AluY SINE Alu 1 294 -17 702 273 14 19 chr1 23284759 23284968 -258908696 - AluJo SINE Alu -8 304 97 238 266 32 0 chr1 23285152 23285246 -258908418 + L1ME3 LINE L1 4980 5076 -1070 509 96 0 130 chr1 23285266 23285381 -258908283 + L1PA14 LINE L1 5928 6027 -134 1980 134 14 0 chr1 23285384 23285674 -258907990 - AluSx SINE Alu -18 294 1 825 231 6 23 chr1 23285689 23285862 -258907802 + AluJb SINE Alu 132 301 -11 464 210 22 22 chr1 23285865 23286003 -258907661 + L1ME3 LINE L1 5674 5811 -351 832 137 0 8 chr1 23286016 23286140 -258907524 + FLAM_C SINE Alu 13 135 -8 322 235 127 77 chr1 23286144 23286404 -258907260 + L1ME3 LINE L1 5806 6078 -84 2385 83 7 3 chr1 23286445 23286745 -258906919 - AluSx SINE Alu -11 301 1 1457 111 14 24 chr1 23286870 23287077 -258906587 - AluSg/x SINE Alu -18 292 88 1908 150 0 7 chr1 23287089 23287376 -258906288 - AluJb SINE Alu -25 287 3 435 229 0 10 chr1 23287385 23287481 -258906183 - MIR SINE MIR -66 196 102 181 279 33 33 chr1 23287672 23287733 -258905931 - MIR SINE MIR -177 85 25 2035 115 3 14 chr1 23287806 23288101 -258905563 - AluSx SINE Alu -9 303 12 767 172 16 0 chr1 23288372 23288494 -258905170 + AluJb SINE Alu 2 125 -187 2388 96 0 0 chr1 23288494 23288795 -258904869 + AluSx SINE Alu 1 301 -11 2005 122 0 0 chr1 23289108 23289378 -258904286 + AluSq SINE Alu 1 270 -43 243 0 0 0 chr1 23289380 23289407 -258904257 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1873 150 3 35 chr1 23289634 23289773 -258903891 + AluJb SINE Alu 1 143 -169 2457 83 0 0 chr1 23289773 23290073 -258903591 + AluY SINE Alu 3 302 -9 1873 150 3 35 chr1 23290073 23290246 -258903418 + AluJb SINE Alu 143 303 -9 2182 108 0 20 chr1 23290523 23290829 -258902835 + AluSx SINE Alu 1 300 -12 2353 113 0 0 chr1 23291077 23291388 -258902276 + AluSq SINE Alu 1 311 -2 2278 112 0 0 chr1 23291446 23291742 -258901922 + AluSx SINE Alu 1 296 -16 1839 146 0 71 chr1 23291782 23291918 -258901746 + AluJb SINE Alu 1 145 -167 2209 98 3 7 chr1 23291918 23292214 -258901450 + AluY SINE Alu 1 295 -16 1839 146 0 71 chr1 23292214 23292400 -258901264 + AluJb SINE Alu 145 300 -12 2327 117 0 0 chr1 23292692 23293000 -258900664 + AluSx SINE Alu 1 308 -4 1490 149 0 105 chr1 23293171 23293494 -258900170 - AluJb SINE Alu -23 289 1 1662 139 47 0 chr1 23294907 23295181 -258898483 - AluSx SINE Alu -25 287 1 2038 89 3 64 chr1 23295192 23295505 -258898159 - AluSp SINE Alu -16 297 4 32 0 0 0 chr1 23295552 23295584 -258898080 + AT_rich Low_complexity Low_complexity 1 32 0 347 265 5 98 chr1 23296811 23297015 -258896649 + HAL1 LINE L1 192 376 -2131 4879 167 44 24 chr1 23297259 23297696 -258895968 + L1MA4 LINE L1 3775 4202 -2098 1608 167 36 0 chr1 23297696 23297977 -258895687 - AluSx SINE Alu -21 291 1 4879 167 44 24 chr1 23297977 23298087 -258895577 + L1MA4 LINE L1 4202 4308 -1992 231 162 0 0 chr1 23298087 23298124 -258895540 + tRNA-Val-GTT tRNA tRNA 1 37 -39 4879 167 44 24 chr1 23298124 23298197 -258895467 + L1MA4 LINE L1 4308 4378 -1922 1866 126 44 7 chr1 23298197 23298491 -258895173 + AluSx SINE Alu 1 305 -7 4879 167 44 24 chr1 23298491 23300168 -258893496 + L1MA4 LINE L1 4378 6175 -125 1262 170 4 13 chr1 23300168 23300403 -258893261 + AluJo SINE Alu 44 276 -36 675 167 8 8 chr1 23300403 23300535 -258893129 + L1MA5 LINE L1 6152 6283 -17 1633 150 61 10 chr1 23300540 23300833 -258892831 - AluSx SINE Alu -4 308 1 1989 131 7 0 chr1 23300920 23301217 -258892447 - AluSg SINE Alu -11 299 1 321 250 13 13 chr1 23301373 23301449 -258892215 + HAL1 LINE L1 1013 1088 -1419 724 321 128 14 chr1 23301542 23302028 -258891636 + HAL1 LINE L1 1523 2063 -444 316 267 61 23 chr1 23302236 23302250 -258891414 + HAL1 LINE L1 2300 2312 -195 2104 125 0 0 chr1 23302250 23302553 -258891111 + AluSx SINE Alu 1 303 -9 316 267 61 23 chr1 23302553 23302669 -258890995 + HAL1 LINE L1 2312 2435 -72 266 239 0 42 chr1 23302735 23302806 -258890858 + HAL1 LINE L1 2440 2507 0 2105 97 21 0 chr1 23303818 23304107 -258889557 + AluSq SINE Alu 1 295 -18 181 296 74 25 chr1 23306471 23306552 -258887112 + MER5A DNA MER1_type 25 109 -80 1180 138 61 0 chr1 23307438 23307634 -258886030 + AluJo SINE Alu 85 292 -20 249 159 0 0 chr1 23307742 23307786 -258885878 + (CA)n Simple_repeat Simple_repeat 2 45 0 182 339 102 45 chr1 23308101 23308278 -258885386 + MIR SINE MIR 17 203 -59 2086 106 0 47 chr1 23309086 23309273 -258884391 - AluSx SINE Alu -5 307 140 2120 89 55 0 chr1 23309273 23309564 -258884100 - AluSc SINE Alu -1 308 2 2086 106 0 47 chr1 23309564 23309698 -258883966 - AluSx SINE Alu -172 140 1 210 321 49 0 chr1 23310311 23310392 -258883272 + MIR SINE MIR 68 152 -56 216 224 66 53 chr1 23310778 23310854 -258882810 + L2 LINE L2 3150 3226 -46 188 224 121 17 chr1 23312768 23312826 -258880838 + MER5A DNA MER1_type 51 114 -75 222 204 19 0 chr1 23313712 23313766 -258879898 + MIR SINE MIR 70 124 -84 513 236 8 0 chr1 23314175 23314298 -258879366 + MIR SINE MIR 24 147 -61 34 55 0 0 chr1 23314323 23314378 -258879286 + GC_rich Low_complexity Low_complexity 1 55 0 371 292 59 0 chr1 23315976 23316118 -258877546 - MIR SINE MIR -61 147 32 245 235 62 0 chr1 23317738 23317819 -258875845 + MIR SINE MIR 42 127 -135 237 306 14 0 chr1 23318328 23318400 -258875264 - L2 LINE L2 -8 3264 3192 222 163 23 0 chr1 23318439 23318482 -258875182 - MIR SINE MIR -72 136 93 526 352 45 0 chr1 23318540 23318739 -258874925 + MIR SINE MIR 35 242 -20 315 257 55 50 chr1 23318740 23318900 -258874764 + MIR SINE MIR 12 178 -62 190 161 0 0 chr1 23319181 23319212 -258874452 + L2 LINE L2 3224 3254 -18 203 286 71 36 chr1 23319464 23319576 -258874088 + MIR SINE MIR 36 151 -57 363 313 36 0 chr1 23319680 23319792 -258873872 + MIR SINE MIR 35 150 -58 500 232 273 15 chr1 23320876 23321074 -258872590 - MIR SINE MIR -12 250 2 335 121 0 35 chr1 23321415 23321473 -258872191 - MIR3 SINE MIR -21 187 132 256 310 0 0 chr1 23321571 23321642 -258872022 - MIR SINE MIR -113 149 79 285 310 228 7 chr1 23321919 23322064 -258871600 - MIR3 SINE MIR -15 193 17 756 212 92 42 chr1 23322096 23322313 -258871351 - MIR SINE MIR -12 250 23 2044 125 0 10 chr1 23322544 23322841 -258870823 - AluSx SINE Alu -14 298 5 350 299 106 29 chr1 23323045 23323178 -258870486 - MIR SINE MIR -38 224 68 1992 119 7 0 chr1 23323178 23323464 -258870200 + AluSx SINE Alu 1 288 -24 350 299 106 29 chr1 23323464 23323537 -258870127 - MIR SINE MIR -194 68 2 433 271 100 7 chr1 23323895 23324035 -258869629 + MIR SINE MIR 89 241 -21 1934 72 133 0 chr1 23324607 23324870 -258868794 + AluSp SINE Alu 1 298 -5 21 0 0 0 chr1 23325069 23325090 -258868574 + AT_rich Low_complexity Low_complexity 1 21 0 750 172 9 0 chr1 23325095 23325211 -258868453 - FLAM_C SINE Alu -25 118 2 2070 115 23 13 chr1 23325222 23325526 -258868138 - AluSx SINE Alu -5 307 1 374 299 97 8 chr1 23325589 23325723 -258867941 - MER20B DNA MER1_type -444 339 194 339 274 142 0 chr1 23325761 23325874 -258867790 - MER20B DNA MER1_type -654 129 1 180 341 87 0 chr1 23325976 23326102 -258867562 - MIR3 SINE MIR -60 148 12 335 208 26 13 chr1 23326764 23326841 -258866823 + L2 LINE L2 3214 3291 -22 192 280 20 0 chr1 23326821 23326871 -258866793 + MIR SINE MIR 196 246 -16 * 183 171 195 0 chr1 23326841 23326882 -258866782 + L2 LINE L2 3262 3310 -3 * 2150 97 40 0 chr1 23327364 23327662 -258866002 - AluSg SINE Alu 0 310 1 258 260 48 29 chr1 23327701 23327805 -258865859 - MIR SINE MIR -67 141 36 184 297 47 0 chr1 23328332 23328396 -258865268 - MIR SINE MIR -149 113 47 373 317 32 0 chr1 23328430 23328553 -258865111 - L1MC4a LINE L1 -1946 5862 5736 228 190 52 17 chr1 23328561 23328619 -258865045 + MER116 DNA Mariner 21 80 0 2114 132 3 0 chr1 23328643 23328954 -258864710 - AluSx SINE Alu 0 312 1 1865 172 3 0 chr1 23328954 23329262 -258864402 - AluJb SINE Alu -3 309 1 710 239 5 70 chr1 23329274 23329487 -258864177 - MIR SINE MIR -13 249 51 237 65 0 0 chr1 23329699 23329730 -258863934 + (CCCCCA)n Simple_repeat Simple_repeat 3 33 0 234 91 0 0 chr1 23330145 23330178 -258863486 + (GGGA)n Simple_repeat Simple_repeat 2 34 0 338 61 20 0 chr1 23330196 23330245 -258863419 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 454 315 27 0 chr1 23331368 23331514 -258862150 - MIR SINE MIR -5 257 108 24 85 0 0 chr1 23331657 23331716 -258861948 + GC_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr1 23331757 23331786 -258861878 + GC_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 23331862 23331883 -258861781 + (CGGGGG)n Simple_repeat Simple_repeat 3 23 0 31 0 0 0 chr1 23331930 23331961 -258861703 + GC_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 23332017 23332048 -258861616 + GC_rich Low_complexity Low_complexity 1 31 0 228 246 15 0 chr1 23332180 23332245 -258861419 + (TG)n Simple_repeat Simple_repeat 1 66 0 180 176 0 0 chr1 23332340 23332374 -258861290 + (TG)n Simple_repeat Simple_repeat 1 34 0 492 261 138 0 chr1 23334200 23334388 -258859276 + MIR SINE MIR 28 241 -21 620 275 123 0 chr1 23335165 23335376 -258858288 - MIR SINE MIR -2 260 24 357 317 32 8 chr1 23335492 23335615 -258858049 + MIR SINE MIR 21 146 -62 298 251 40 10 chr1 23336071 23336181 -258857483 + MIR SINE MIR 15 126 -82 1618 146 0 11 chr1 23336309 23336569 -258857095 - AluSx SINE Alu -16 296 40 251 324 165 0 chr1 23337219 23337389 -258856275 - MIR SINE MIR -17 245 48 606 273 34 46 chr1 23337598 23337836 -258855828 - MIR SINE MIR -12 250 16 1113 143 0 0 chr1 23338278 23338453 -258855211 - AluJb SINE Alu -1 311 137 346 345 0 17 chr1 23338610 23338726 -258854938 - L2 LINE L2 0 3313 3200 266 167 37 0 chr1 23338729 23338783 -258854881 + MIR SINE MIR 91 146 -116 2282 89 0 13 chr1 23338856 23339169 -258854495 - AluSg1 SINE Alu 0 309 1 693 322 70 4 chr1 23339203 23339445 -258854219 - MIR SINE MIR 0 262 5 505 271 40 0 chr1 23339453 23339604 -258854060 - L2 LINE L2 -248 3065 2909 309 255 34 47 chr1 23339903 23340019 -258853645 + MIR SINE MIR 39 151 -75 2412 78 3 0 chr1 23340200 23340509 -258853155 - AluSg SINE Alu 0 310 1 311 332 46 63 chr1 23340591 23340871 -258852793 - L2 LINE L2 -4 3268 2994 360 0 0 0 chr1 23340871 23340911 -258852753 + (TG)n Simple_repeat Simple_repeat 2 41 0 311 332 46 63 chr1 23340911 23340997 -258852667 - L2 LINE L2 -278 2994 2908 617 263 108 33 chr1 23341258 23341471 -258852193 + MIR SINE MIR 31 259 -3 209 331 136 0 chr1 23341646 23341815 -258851849 + MIR SINE MIR 19 210 -52 236 322 11 11 chr1 23341887 23341974 -258851690 + MIR3 SINE MIR 86 172 -36 372 245 59 20 chr1 23341987 23342089 -258851575 + MIR SINE MIR 34 139 -123 637 303 152 10 chr1 23342134 23342444 -258851220 - L2 LINE L2 0 3272 2919 1935 137 0 41 chr1 23342566 23342880 -258850784 + AluSx SINE Alu 1 301 -11 333 302 45 49 chr1 23343583 23343848 -258849816 - L2 LINE L2 -339 2975 2712 632 280 28 6 chr1 23344181 23344363 -258849301 - MIR SINE MIR -56 206 21 364 356 87 5 chr1 23344813 23345032 -258848632 + MIR SINE MIR 7 243 -19 368 367 54 0 chr1 23345050 23345197 -258848467 - L1ME4a LINE L1 -1 6120 5966 2226 123 3 0 chr1 23345301 23345611 -258848053 - AluSx SINE Alu -1 311 1 1792 161 6 50 chr1 23345611 23345934 -258847730 - AluJb SINE Alu -3 309 1 636 283 105 19 chr1 23345937 23346262 -258847402 - L1MC4a LINE L1 -167 5954 5600 1933 139 9 25 chr1 23346333 23346650 -258847014 + AluJb SINE Alu 1 312 0 204 240 40 0 chr1 23346650 23346700 -258846964 - L3 LINE CR1 -12 1565 1514 336 48 0 0 chr1 23346821 23346863 -258846801 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 213 121 0 0 chr1 23346866 23346899 -258846765 + (TCC)n Simple_repeat Simple_repeat 3 35 0 2353 103 0 0 chr1 23346902 23347212 -258846452 - AluSp SINE Alu -3 310 1 182 36 0 36 chr1 23347311 23347339 -258846325 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 877 188 85 1 chr1 23347368 23347562 -258846102 - MIR SINE MIR -37 171 6 577 251 24 48 chr1 23347577 23347744 -258845920 - MIR SINE MIR -13 249 87 279 314 29 10 chr1 23347862 23347964 -258845700 - MIR SINE MIR -63 145 42 301 265 10 31 chr1 23348237 23348335 -258845329 + L2 LINE L2 3175 3270 -2 208 283 76 76 chr1 23348629 23348774 -258844890 + MIR SINE MIR 83 227 -35 401 227 38 45 chr1 23349220 23349352 -258844312 + MIR SINE MIR 61 191 -71 269 179 71 18 chr1 23350633 23350689 -258842975 - MIR SINE MIR -80 182 124 1517 201 4 4 chr1 23350838 23351117 -258842547 - AluJo SINE Alu -31 281 3 319 319 38 59 chr1 23351165 23351403 -258842261 + MIR SINE MIR 30 262 0 211 273 93 27 chr1 23351599 23351723 -258841941 + MIR SINE MIR 10 146 -62 440 216 30 52 chr1 23351859 23351993 -258841671 + MIR3 SINE MIR 11 141 -67 2349 99 0 0 chr1 23352020 23352333 -258841331 - AluSq SINE Alu 0 313 1 1468 176 30 43 chr1 23352878 23353179 -258840485 + AluJo SINE Alu 1 297 -15 1830 132 43 13 chr1 23353179 23353482 -258840182 + AluJo SINE Alu 1 312 0 560 184 281 11 chr1 23353519 23353704 -258839960 + MIR SINE MIR 7 241 -21 428 324 69 6 chr1 23353839 23354012 -258839652 + MIR SINE MIR 17 200 -62 403 265 176 24 chr1 23354594 23354764 -258838900 + MIR SINE MIR 53 248 -14 207 100 0 0 chr1 23354804 23354834 -258838830 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 1815 112 0 103 chr1 23354834 23354997 -258838667 - AluSx SINE Alu -16 296 182 2318 80 0 10 chr1 23354997 23355299 -258838365 - AluSc SINE Alu -10 299 1 1815 112 0 103 chr1 23355299 23355465 -258838199 - AluSx SINE Alu -130 182 1 183 42 0 0 chr1 23355607 23355631 -258838033 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 284 234 0 0 chr1 23355738 23355802 -258837862 - MIR SINE MIR -134 128 65 2265 103 3 3 chr1 23356021 23356333 -258837331 + AluSp SINE Alu 1 312 -1 222 326 107 21 chr1 23356688 23356898 -258836766 + MIR SINE MIR 9 258 -4 388 329 14 41 chr1 23357736 23357882 -258835782 + MIR SINE MIR 120 261 -1 361 296 45 30 chr1 23357875 23358007 -258835657 - L2 LINE L2 -2 3270 3137 * 808 275 47 0 chr1 23358043 23358276 -258835388 - MIR SINE MIR 0 262 19 317 298 32 0 chr1 23358393 23358487 -258835177 - MIR SINE MIR -120 142 46 254 220 198 11 chr1 23358794 23358885 -258834779 + MIR SINE MIR 42 149 -59 294 296 56 32 chr1 23359070 23359195 -258834469 - MIR3 SINE MIR -36 172 45 299 241 46 0 chr1 23359296 23359383 -258834281 + MIR3 SINE MIR 93 183 -25 363 235 219 8 chr1 23360390 23360509 -258833155 - MIR3 SINE MIR -25 183 40 419 316 167 0 chr1 23360706 23360874 -258832790 + MIR SINE MIR 53 248 -14 33 0 0 0 chr1 23361056 23361089 -258832575 + GC_rich Low_complexity Low_complexity 1 33 0 210 91 0 0 chr1 23361101 23361134 -258832530 + (CCCCG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr1 23361140 23361168 -258832496 + GC_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 23361229 23361259 -258832405 + GC_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr1 23361284 23361316 -258832348 + GC_rich Low_complexity Low_complexity 1 32 0 311 261 0 11 chr1 23364243 23364331 -258829333 + CT-rich Low_complexity Low_complexity 1 87 0 210 341 12 0 chr1 23364816 23364898 -258828766 - L2 LINE L2 -31 3241 3159 456 241 28 0 chr1 23365401 23365509 -258828155 + MER5A DNA MER1_type 19 129 -60 919 264 56 20 chr1 23366639 23366889 -258826775 + MIR SINE MIR 2 260 -2 382 288 45 0 chr1 23366887 23366998 -258826666 - L2 LINE L2 -22 3291 3176 * 542 239 268 34 chr1 23367148 23367357 -258826307 + MIR SINE MIR 2 259 -3 333 253 94 18 chr1 23367346 23367501 -258826163 - MIR SINE MIR -64 198 34 * 510 17 0 0 chr1 23367536 23367595 -258826069 + (TG)n Simple_repeat Simple_repeat 2 60 0 185 239 22 0 chr1 23367902 23367948 -258825716 + L2 LINE L2 3224 3270 -2 2143 121 0 0 chr1 23368040 23368337 -258825327 + AluSx SINE Alu 1 297 -15 413 278 32 8 chr1 23369398 23369524 -258824140 - MIR SINE MIR -118 144 16 313 336 130 0 chr1 23369797 23369928 -258823736 - MIR3 SINE MIR -36 172 25 472 284 196 5 chr1 23370611 23370805 -258822859 - MIR SINE MIR -10 252 22 325 223 78 29 chr1 23371125 23371228 -258822436 - MIR3 SINE MIR -30 178 71 590 355 50 16 chr1 23371335 23371577 -258822087 + MIR SINE MIR 1 250 -12 293 304 98 0 chr1 23372464 23372566 -258821098 + MIR SINE MIR 151 262 0 326 264 171 7 chr1 23372624 23372764 -258820900 - L2 LINE L2 -214 3058 2896 344 254 88 18 chr1 23373008 23373122 -258820542 + MIR3 SINE MIR 15 136 -72 727 158 0 36 chr1 23373151 23373290 -258820374 - L1PB3 LINE L1 0 6154 6021 345 242 289 0 chr1 23376254 23376403 -258817261 + MIR SINE MIR 4 195 -67 229 260 0 0 chr1 23377043 23377093 -258816571 + GA-rich Low_complexity Low_complexity 2 51 0 255 286 0 0 chr1 23377242 23377305 -258816359 - MIR SINE MIR -93 115 53 945 180 0 0 chr1 23378642 23378887 -258814777 + (CCCA)n Simple_repeat Simple_repeat 1 245 0 312 102 0 0 chr1 23378909 23378958 -258814706 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 195 296 0 0 chr1 23378958 23379002 -258814662 - L2 LINE L2 -20 3293 3250 313 341 6 39 chr1 23379247 23379482 -258814182 + CT-rich Low_complexity Low_complexity 1 227 0 213 270 14 14 chr1 23379594 23379668 -258813996 + CT-rich Low_complexity Low_complexity 3 76 0 251 246 9 0 chr1 23379685 23379795 -258813869 + CT-rich Low_complexity Low_complexity 2 112 0 440 280 8 8 chr1 23381119 23381237 -258812427 - MIR SINE MIR -125 137 20 434 289 34 27 chr1 23381382 23381531 -258812133 + MIR SINE MIR 59 208 -54 286 222 0 0 chr1 23381612 23381675 -258811989 + MIR SINE MIR 47 109 -153 202 289 132 16 chr1 23382335 23382456 -258811208 - L2 LINE L2 -171 3142 3008 1060 184 6 0 chr1 23382539 23382713 -258810951 + FAM SINE Alu 1 175 0 425 323 85 40 chr1 23382762 23382834 -258810830 - L2 LINE L2 -462 2852 2785 2379 64 3 0 chr1 23382834 23383129 -258810535 - AluY SINE Alu -15 296 1 425 323 85 40 chr1 23383129 23383279 -258810385 - L2 LINE L2 -529 2785 2620 543 272 169 14 chr1 23383591 23383804 -258809860 + MIR SINE MIR 16 261 -1 332 276 82 8 chr1 23383822 23383956 -258809708 - L2 LINE L2 -514 2800 2657 517 260 107 60 chr1 23384387 23384743 -258808921 + L2 LINE L2 2725 3099 -173 351 331 16 0 chr1 23384770 23384891 -258808773 - L2 LINE L2 0 3272 3150 255 313 221 0 chr1 23384890 23385021 -258808643 + L2 LINE L2 3113 3272 0 * 180 0 0 0 chr1 23385602 23385622 -258808042 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2213 86 4 0 chr1 23385630 23385909 -258807755 - AluY SINE Alu -30 281 2 4229 214 21 18 chr1 23385909 23386227 -258807437 - L1M4 LINE L1 -1815 4331 4015 1986 122 104 27 chr1 23386227 23386563 -258807101 + THE1B LTR MaLR 1 362 -2 4229 214 21 18 chr1 23386563 23387402 -258806262 - L1M4 LINE L1 -2131 4015 3171 184 262 301 0 chr1 23387403 23387506 -258806158 - MIR SINE MIR -128 134 1 369 318 45 40 chr1 23388423 23388599 -258805065 - MIR SINE MIR -36 226 50 486 290 180 10 chr1 23388873 23389073 -258804591 - MIR SINE MIR -26 236 3 377 222 0 0 chr1 23390519 23390591 -258803073 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 286 43 0 chr1 23391497 23391567 -258802097 + GA-rich Low_complexity Low_complexity 3 75 0 231 188 125 0 chr1 23392975 23393039 -258800625 + HAL1 LINE L1 2281 2352 -155 195 204 0 0 chr1 23393162 23393206 -258800458 + (TA)n Simple_repeat Simple_repeat 2 45 0 291 360 47 14 chr1 23393368 23393643 -258800021 + L1MC/D LINE L1 5490 5772 -387 183 295 116 8 chr1 23393729 23393858 -258799806 - MIR SINE MIR -16 246 104 180 0 0 0 chr1 23393988 23394008 -258799656 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 526 50 50 0 chr1 23394790 23394870 -258798794 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 33 66 0 0 chr1 23394888 23394949 -258798715 + AT_rich Low_complexity Low_complexity 1 61 0 1351 196 24 21 chr1 23395021 23395312 -258798352 + AluJo SINE Alu 14 305 -7 1196 273 81 29 chr1 23395387 23395801 -258797863 - L1 LINE L1 -1443 4703 4259 290 98 20 0 chr1 23395801 23395852 -258797812 + (TG)n Simple_repeat Simple_repeat 2 53 0 1196 273 81 29 chr1 23395852 23395921 -258797743 - L1 LINE L1 -1887 4259 4195 440 298 71 47 chr1 23395918 23396327 -258797337 - L1MCa LINE L1 -4701 1516 1098 * 269 244 101 8 chr1 23396569 23396688 -258796976 - L1MCa LINE L1 -5451 945 816 1600 154 0 19 chr1 23396688 23396954 -258796710 - AluSq SINE Alu -3 310 50 1090 266 28 8 chr1 23397257 23397645 -258796019 + L1M4 LINE L1 4859 5254 -892 365 344 21 10 chr1 23397648 23397840 -258795824 + MLT2D LTR ERVL 1 194 -220 270 189 68 0 chr1 23397865 23397939 -258795725 + MLT2B2 LTR ERVL 367 445 -70 515 321 43 45 chr1 23399560 23400002 -258793662 + L1MC4 LINE L1 7189 7629 -413 248 313 17 9 chr1 23400072 23400187 -258793477 - L1MC4 LINE L1 -467 7575 7460 282 132 0 0 chr1 23401337 23401390 -258792274 + (GA)n Simple_repeat Simple_repeat 1 53 0 249 151 0 0 chr1 23402880 23402933 -258790731 + GA-rich Low_complexity Low_complexity 1 53 0 345 47 0 0 chr1 23404437 23404480 -258789184 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr1 23404479 23404508 -258789156 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 17010 81 2 18 chr1 23406724 23409113 -258784551 + L1P LINE L1 875 3226 -2920 1748 158 0 0 chr1 23409833 23410106 -258783558 + AluSx SINE Alu 38 310 -2 298 232 42 42 chr1 23413241 23413336 -258780328 + L1MB5 LINE L1 6071 6165 -9 372 277 44 13 chr1 23414261 23414420 -258779244 - MIR SINE MIR -3 259 96 2042 112 11 0 chr1 23414569 23414855 -258778809 - AluSg SINE Alu -21 289 1 248 246 15 15 chr1 23417223 23417288 -258776376 - MIR SINE MIR -62 146 82 213 316 96 7 chr1 23418869 23419005 -258774659 - MER5A DNA MER1_type -28 161 14 283 269 95 0 chr1 23419032 23419131 -258774533 - MIR SINE MIR -67 141 47 1924 165 10 0 chr1 23419269 23419572 -258774092 - AluJo SINE Alu -6 306 1 3563 209 38 23 chr1 23419678 23420773 -258772891 - L1MB7 LINE L1 -26 6158 5041 243 321 86 1 chr1 23421408 23421554 -258772110 - MIR SINE MIR -73 189 34 1374 284 97 46 chr1 23421846 23422050 -258771614 - L1ME3 LINE L1 -1 6441 6249 2523 170 5 2 chr1 23422050 23422480 -258771184 - MSTB1 LTR MaLR -1 431 1 1374 284 97 46 chr1 23422480 23422535 -258771129 - L1ME3 LINE L1 -193 6249 6198 1943 118 38 14 chr1 23422535 23422824 -258770840 + AluSx SINE Alu 1 296 -16 1374 284 97 46 chr1 23422824 23423798 -258769866 - L1ME3 LINE L1 -244 6198 5142 1878 63 0 4 chr1 23423827 23424064 -258769600 + L1PA6 LINE L1 5909 6144 -10 954 262 112 16 chr1 23424872 23425356 -258768308 - L1ME3 LINE L1 -1288 5138 4609 2216 268 72 15 chr1 23425375 23425832 -258767832 - L1ME1 LINE L1 -6 6229 5800 5048 72 11 19 chr1 23425832 23426497 -258767167 + PABL_A LTR ERV1 2 660 0 2216 268 72 15 chr1 23426497 23426855 -258766809 - L1ME1 LINE L1 -435 5800 5367 248 176 153 0 chr1 23426833 23426918 -258766746 - L1ME3 LINE L1 -4334 2092 1995 * 219 69 0 0 chr1 23426920 23426949 -258766715 + (TA)n Simple_repeat Simple_repeat 2 30 0 327 96 0 0 chr1 23427078 23427130 -258766534 + (CA)n Simple_repeat Simple_repeat 2 53 0 1289 289 27 37 chr1 23427150 23427738 -258765926 - L1ME1 LINE L1 -1715 4711 4130 21 71 0 0 chr1 23427780 23427822 -258765842 + AT_rich Low_complexity Low_complexity 1 42 0 297 241 36 45 chr1 23427944 23428056 -258765608 - L1ME1 LINE L1 -3407 3019 2909 279 365 49 19 chr1 23428493 23428759 -258764905 - L1ME1 LINE L1 -5941 666 393 1908 233 70 28 chr1 23428897 23429522 -258764142 + MLT1E3 LTR MaLR 1 624 0 335 270 0 0 chr1 23430213 23430287 -258763377 - LTR16B LTR ERVL -390 74 1 591 285 45 20 chr1 23430308 23430508 -258763156 - ERVL LTR ERVL -3761 2003 1799 302 395 9 9 chr1 23430693 23430916 -258762748 - ERVL LTR ERVL -3546 1450 1228 538 243 94 48 chr1 23430954 23431240 -258762424 - LTR33 LTR ERVL -248 275 8 212 229 66 16 chr1 23431815 23431876 -258761788 + MIR3 SINE MIR 138 201 -7 1538 211 59 8 chr1 23432849 23433205 -258760459 + L1ME2 LINE L1 5528 5901 -263 532 251 36 90 chr1 23433313 23433592 -258760072 + MLT1E2-int LTR MaLR 1010 1273 -98 892 261 130 25 chr1 23433842 23434277 -258759387 + MLT1E2 LTR MaLR 137 654 0 282 29 0 0 chr1 23434342 23434377 -258759287 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 1991 123 7 4 chr1 23434535 23434839 -258758825 + AluSq SINE Alu 9 313 0 316 245 61 55 chr1 23435166 23435329 -258758335 + L1MB8 LINE L1 5990 6153 -25 939 274 89 15 chr1 23435339 23435733 -258757931 + L1MCa LINE L1 21 443 -5983 * 3088 207 56 12 chr1 23435731 23437209 -258756455 + L1MC2 LINE L1 4721 6341 -3 313 250 0 26 chr1 23437675 23437831 -258755833 + GA-rich Low_complexity Low_complexity 4 155 0 224 302 0 0 chr1 23437931 23437994 -258755670 + GA-rich Low_complexity Low_complexity 3 65 0 425 49 0 16 chr1 23437995 23438056 -258755608 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 190 364 26 0 chr1 23438568 23438645 -258755019 + L2 LINE L2 3230 3308 -5 196 271 0 0 chr1 23439128 23439176 -258754488 - L2 LINE L2 -1 3312 3265 542 262 43 0 chr1 23439532 23439673 -258753991 - L2 LINE L2 -797 2517 2371 912 120 15 130 chr1 23439724 23439924 -258753740 + AluJo SINE Alu 83 259 -53 386 248 35 9 chr1 23440155 23440268 -258753396 - MLT1I LTR MaLR -17 392 277 348 289 21 0 chr1 23440344 23440441 -258753223 - L2 LINE L2 0 3272 3174 1816 169 10 0 chr1 23440592 23440887 -258752777 + AluJb SINE Alu 1 298 -14 299 186 0 0 chr1 23441325 23441384 -258752280 - AluJo SINE Alu -166 136 78 253 292 9 26 chr1 23441424 23441537 -258752127 + L1ME LINE L1 4842 4952 -1194 1856 158 6 10 chr1 23441541 23441852 -258751812 + AluJb SINE Alu 1 310 -2 620 238 160 23 chr1 23441865 23441987 -258751677 + L1ME LINE L1 5047 5151 -1019 1806 174 3 7 chr1 23441987 23442291 -258751373 + AluJb SINE Alu 1 303 -9 620 238 160 23 chr1 23442291 23442691 -258750973 + L1ME LINE L1 5151 5623 -547 324 154 240 58 chr1 23442924 23442979 -258750685 + L1ME3A LINE L1 6037 6081 -89 1871 171 0 0 chr1 23442979 23443278 -258750386 - AluJb SINE Alu -11 301 3 324 154 240 58 chr1 23443278 23443326 -258750338 + L1ME3A LINE L1 6081 6159 -11 21 36 0 0 chr1 23444399 23444427 -258749237 + GC_rich Low_complexity Low_complexity 1 28 0 310 155 0 14 chr1 23444986 23445057 -258748607 + FLAM SINE Alu 63 132 -1 1670 134 0 0 chr1 23445190 23445436 -258748228 - AluSq SINE Alu -5 308 63 948 125 0 0 chr1 23445436 23445572 -258748092 - AluSg/x SINE Alu -40 272 137 401 255 159 13 chr1 23445952 23446109 -258747555 + MIR SINE MIR 76 255 -7 * 538 286 27 32 chr1 23446106 23446291 -258747373 - MIR SINE MIR 0 262 79 2135 103 3 3 chr1 23446292 23446583 -258747081 + AluSx SINE Alu 1 291 -21 2082 98 20 0 chr1 23446587 23446883 -258746781 + AluSp SINE Alu 3 304 -9 1210 80 0 0 chr1 23446883 23447045 -258746619 + AluY SINE Alu 133 294 -17 195 186 23 0 chr1 23448221 23448264 -258745400 + L2 LINE L2 3014 3057 -215 319 261 27 0 chr1 23448798 23448893 -258744771 - MIR SINE MIR -76 132 32 531 237 64 17 chr1 23448977 23449192 -258744472 + MIR SINE MIR 18 244 -18 326 248 0 41 chr1 23449520 23449623 -258744041 + MIR SINE MIR 73 152 -56 1987 123 24 0 chr1 23449669 23449961 -258743703 - AluSx SINE Alu -13 299 1 2105 121 10 3 chr1 23450452 23450758 -258742906 + AluSx SINE Alu 1 308 -4 697 197 23 15 chr1 23450767 23450899 -258742765 + FLAM_A SINE Alu 1 133 0 948 303 35 20 chr1 23450904 23451363 -258742301 + L1MC4a LINE L1 5420 5885 -1923 270 0 0 0 chr1 23451411 23451441 -258742223 + (TG)n Simple_repeat Simple_repeat 2 31 0 2218 107 0 0 chr1 23451498 23451798 -258741866 + AluSx SINE Alu 1 300 -12 228 111 0 0 chr1 23451978 23452014 -258741650 + (T)n Simple_repeat Simple_repeat 1 36 0 2281 106 0 0 chr1 23452047 23452359 -258741305 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 23452415 23452438 -258741226 + (CA)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr1 23456248 23456277 -258737387 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 23456412 23456442 -258737222 + GC_rich Low_complexity Low_complexity 1 30 0 332 234 234 8 chr1 23458264 23458392 -258735272 + MIR3 SINE MIR 20 176 -32 727 300 22 22 chr1 23459127 23459357 -258734307 + MIR SINE MIR 20 249 -13 496 325 91 17 chr1 23460483 23460714 -258732950 + MIR SINE MIR 1 248 -14 217 379 106 0 chr1 23461481 23461613 -258732051 + MIR SINE MIR 110 255 -7 325 294 0 7 chr1 23462160 23462303 -258731361 + CT-rich Low_complexity Low_complexity 2 143 0 1156 123 21 16 chr1 23462547 23462734 -258730930 + MER53 DNA DNA 1 188 -1 335 186 0 0 chr1 23462982 23463041 -258730623 + L2 LINE L2 3254 3312 -1 226 283 0 0 chr1 23463622 23463675 -258729989 + (CTCA)n Simple_repeat Simple_repeat 3 55 0 361 299 39 39 chr1 23463727 23463881 -258729783 + MIR SINE MIR 31 184 -78 221 307 0 40 chr1 23465274 23465349 -258728315 + MIR3 SINE MIR 112 183 -25 696 213 0 0 chr1 23465424 23465551 -258728113 - AluJo SINE Alu -3 309 183 782 178 0 0 chr1 23465567 23465685 -258727979 - AluJo SINE Alu -184 118 1 209 239 98 76 chr1 23465836 23465928 -258727736 + MIR SINE MIR 20 113 -149 * 823 278 186 29 chr1 23465919 23466401 -258727263 + L2 LINE L2 2183 2588 -725 2382 75 0 19 chr1 23466401 23466709 -258726955 - AluSg SINE Alu -8 302 1 823 278 186 29 chr1 23466709 23466984 -258726680 + L2 LINE L2 2588 3059 -254 180 77 0 0 chr1 23467788 23467814 -258725850 + (CCCCCA)n Simple_repeat Simple_repeat 6 31 0 740 288 30 21 chr1 23468183 23468419 -258725245 + MIR SINE MIR 14 251 -11 476 300 29 8 chr1 23468896 23469044 -258724620 + MIR SINE MIR 16 172 -60 196 294 20 0 chr1 23469080 23469131 -258724533 + L2 LINE L2 3234 3285 -28 1726 92 119 8 chr1 23469385 23469646 -258724018 - AluSg SINE Alu -20 290 1 1147 45 0 0 chr1 23470233 23470365 -258723299 - AluY SINE Alu -179 132 1 1781 147 17 3 chr1 23470416 23470715 -258722949 - AluJb SINE Alu -9 303 1 406 265 155 27 chr1 23470927 23471146 -258722518 + MLT1J2 LTR MaLR 64 310 -140 258 347 0 20 chr1 23471644 23471742 -258721922 - MIR SINE MIR -92 116 21 1199 274 18 9 chr1 23471847 23472187 -258721477 + LTR16C LTR ERVL 149 491 0 3513 81 6 10 chr1 23472204 23472308 -258721356 + L1PB1 LINE L1 5200 5303 -848 2522 50 0 0 chr1 23472308 23472607 -258721057 + AluY SINE Alu 1 299 -12 3513 81 6 10 chr1 23472607 23473094 -258720570 + L1PB1 LINE L1 5303 5791 -360 210 191 0 0 chr1 23473101 23473143 -258720521 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2464 99 25 8 chr1 23473143 23473505 -258720159 + L1PB1 LINE L1 5782 6149 -2 312 206 82 0 chr1 23473597 23473634 -258720030 - MER113 DNA MER1_type? -416 105 72 2399 69 3 0 chr1 23473634 23473937 -258719727 + AluY SINE Alu 1 304 -7 312 206 82 0 chr1 23473937 23473996 -258719668 - MER113 DNA MER1_type? -449 72 1 1729 184 7 0 chr1 23474056 23474365 -258719299 - AluJb SINE Alu 0 312 2 2457 60 0 22 chr1 23474371 23474689 -258718975 - AluY SINE Alu 0 311 1 1671 195 10 0 chr1 23474692 23474990 -258718674 - AluJo SINE Alu -11 301 1 502 286 90 33 chr1 23475229 23475474 -258718190 + MIR SINE MIR 3 261 -1 279 170 89 185 chr1 23475612 23475685 -258717979 + L2 LINE L2 3150 3206 -66 2188 82 51 0 chr1 23475685 23475979 -258717685 - AluSp SINE Alu -4 309 1 279 170 89 185 chr1 23475979 23476040 -258717624 + L2 LINE L2 3206 3271 -1 1978 132 0 7 chr1 23476146 23476481 -258717183 - AluSx SINE Alu 0 333 1 334 218 178 10 chr1 23476486 23476587 -258717077 - MIR SINE MIR -74 188 71 283 272 193 26 chr1 23477844 23477958 -258715706 - MIR SINE MIR -118 144 12 528 254 146 5 chr1 23478156 23478341 -258715323 - MIR SINE MIR -16 246 36 909 46 23 0 chr1 23478808 23478939 -258714725 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 232 318 119 8 chr1 23479759 23479885 -258713779 - MIR SINE MIR -20 242 103 200 297 47 0 chr1 23480873 23480937 -258712727 - MIR SINE MIR -171 91 25 2338 98 0 9 chr1 23481664 23481979 -258711685 - AluSx SINE Alu 0 312 1 511 255 37 31 chr1 23481981 23482142 -258711522 - MIR SINE MIR -68 194 33 180 289 19 0 chr1 23482293 23482345 -258711319 + MIR SINE MIR 100 152 -56 1955 152 154 14 chr1 23482538 23482972 -258710692 + MLT1F LTR MaLR 7 501 -41 857 146 104 0 chr1 23482972 23483116 -258710548 - AluJo/FRAM SINE Alu -21 291 133 1985 147 0 10 chr1 23483117 23483423 -258710241 - AluJo SINE Alu -9 303 1 2345 83 0 6 chr1 23483427 23483740 -258709924 - AluY SINE Alu 0 311 1 266 130 0 0 chr1 23483750 23483796 -258709868 + MLT1F LTR MaLR 497 542 0 696 216 14 0 chr1 23483871 23484019 -258709645 - MIR SINE MIR -109 153 4 203 286 19 20 chr1 23484449 23484556 -258709108 + MIR SINE MIR 46 146 -62 359 338 52 28 chr1 23484988 23485201 -258708463 - L2 LINE L2 -143 3129 2912 241 237 51 0 chr1 23485599 23485658 -258708006 - MIR SINE MIR -91 171 110 468 289 94 20 chr1 23487306 23487507 -258706157 - MIR SINE MIR 0 262 47 368 302 103 0 chr1 23488113 23488229 -258705435 + MIR SINE MIR 15 142 -120 1956 148 0 23 chr1 23488234 23488538 -258705126 + AluJb SINE Alu 1 297 -15 2248 106 0 22 chr1 23488540 23488851 -258704813 + AluSx SINE Alu 1 304 -8 251 53 0 26 chr1 23489263 23489301 -258704363 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 306 324 60 33 chr1 23489653 23489835 -258703829 - MIR SINE MIR -50 212 26 512 308 68 30 chr1 23490267 23490504 -258703160 - MIR SINE MIR -8 254 9 211 218 77 51 chr1 23491556 23491634 -258702030 - MIR SINE MIR -79 183 104 193 292 44 44 chr1 23491707 23491820 -258701844 - MIR3 SINE MIR -2 206 94 643 210 0 8 chr1 23492762 23492881 -258700783 + Tigger1 DNA MER2_type 22 139 -2279 * 1336 126 19 0 chr1 23492877 23493091 -258700573 + Tigger1 DNA MER2_type 2200 2417 -1 2323 108 7 0 chr1 23493164 23493461 -258700203 + AluSx SINE Alu 1 299 -13 1426 146 130 0 chr1 23493471 23493724 -258699940 + AluJo SINE Alu 1 286 -26 246 287 13 60 chr1 23493735 23493885 -258699779 + L1ME3A LINE L1 5936 6078 -92 314 229 136 51 chr1 23494706 23494824 -258698840 - MIR SINE MIR -113 149 22 2195 123 3 3 chr1 23495309 23495610 -258698054 + AluSx SINE Alu 2 302 -10 717 247 75 34 chr1 23497060 23497385 -258696279 + L1ME3 LINE L1 5823 6162 0 612 195 17 0 chr1 23497404 23497522 -258696142 + FRAM SINE Alu 11 130 -46 319 326 167 0 chr1 23497803 23497935 -258695729 - MIR SINE MIR -7 255 102 2339 108 0 0 chr1 23498173 23498470 -258695194 - AluSx SINE Alu -15 297 1 1778 170 21 7 chr1 23498479 23498768 -258694896 - AluJo SINE Alu -19 293 1 2498 66 0 10 chr1 23499054 23499359 -258694305 + AluY SINE Alu 1 302 -9 2201 100 0 27 chr1 23499409 23499708 -258693956 + AluSx SINE Alu 1 291 -21 3117 69 7 22 chr1 23499709 23500159 -258693505 + LTR7 LTR ERV1 1 443 -7 1097 32 19 13 chr1 23500164 23500319 -258693345 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 2549 72 0 0 chr1 23500319 23500623 -258693041 + AluY SINE Alu 2 305 -6 22 35 0 0 chr1 23500623 23500652 -258693012 + AT_rich Low_complexity Low_complexity 1 29 0 328 248 7 95 chr1 23500660 23500800 -258692864 + L1MC4 LINE L1 1977 6989 -1333 287 274 118 0 chr1 23501211 23501313 -258692351 - L2 LINE L2 -1 3312 3199 416 168 230 56 chr1 23501442 23501603 -258692061 - MER5A DNA MER1_type 0 189 1 280 271 23 47 chr1 23501779 23501908 -258691756 + L1ME4a LINE L1 5995 6120 -1 * 583 168 29 82 chr1 23501877 23502085 -258691579 + L1ME4a LINE L1 5904 6100 -21 22 100 0 9 chr1 23502340 23502403 -258691261 + AT_rich Low_complexity Low_complexity 1 64 -45 725 141 0 31 chr1 23502403 23502531 -258691133 + FLAM_A SINE Alu 1 124 -9 22 100 0 9 chr1 23502531 23502577 -258691087 + AT_rich Low_complexity Low_complexity 64 109 0 2437 76 17 0 chr1 23502611 23502912 -258690752 - AluSp SINE Alu -3 310 5 23 0 0 0 chr1 23502919 23502942 -258690722 + AT_rich Low_complexity Low_complexity 1 23 0 11785 93 30 11 chr1 23503698 23504211 -258689453 + MER41B-int LTR ERV1 4120 4621 -1325 2235 122 7 3 chr1 23504211 23504515 -258689149 - AluSx SINE Alu -7 305 1 11785 93 30 11 chr1 23504515 23505791 -258687873 + MER41B-int LTR ERV1 4621 5944 -2 3895 130 12 19 chr1 23505794 23505862 -258687802 + MER41B LTR ERV1 1 68 -567 2372 82 0 0 chr1 23505862 23506183 -258687481 + AluSg SINE Alu 1 321 0 3895 130 12 19 chr1 23506183 23506752 -258686912 + MER41B LTR ERV1 68 635 0 1598 148 10 96 chr1 23506773 23507171 -258686493 - L1MB8 LINE L1 0 6178 5815 458 143 0 41 chr1 23507172 23507270 -258686394 - L1MB5 LINE L1 0 6174 6081 1716 141 78 32 chr1 23507271 23507478 -258686186 - MLT1A1 LTR MaLR 0 365 134 207 0 0 0 chr1 23507487 23507510 -258686154 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 1957 173 0 3 chr1 23507510 23507800 -258685864 - AluJb SINE Alu -21 291 1 1716 141 78 32 chr1 23507800 23507939 -258685725 - MLT1A1 LTR MaLR -231 134 3 3178 220 76 25 chr1 23507941 23508088 -258685576 - MLT1A1-int LTR MaLR -1 1730 1592 2159 122 22 22 chr1 23508088 23508282 -258685382 + AluSx SINE Alu 1 197 -115 2397 58 13 26 chr1 23508282 23508591 -258685073 + AluY SINE Alu 1 305 -6 2159 122 22 22 chr1 23508591 23508708 -258684956 + AluSx SINE Alu 196 312 0 2381 95 0 0 chr1 23508716 23509011 -258684653 + AluSg1 SINE Alu 2 296 -13 3178 220 76 25 chr1 23509011 23509876 -258683788 - MLT1A1-int LTR MaLR -145 1586 546 1047 180 0 0 chr1 23509876 23510043 -258683621 - AluJb SINE Alu -10 302 136 2346 107 0 0 chr1 23510045 23510343 -258683321 - AluSx SINE Alu -14 298 1 655 146 0 0 chr1 23510362 23510465 -258683199 - MLT1A1 LTR MaLR -262 103 1 1399 160 80 7 chr1 23510465 23510753 -258682911 - L1MB7 LINE L1 -101 6083 5775 2754 29 7 0 chr1 23510926 23511235 -258682429 + AluY SINE Alu 1 311 0 319 269 81 87 chr1 23511311 23511460 -258682204 + L1ME4a LINE L1 5971 6118 -3 1020 245 141 35 chr1 23511972 23512397 -258681267 + L1ME3A LINE L1 5692 6161 -9 383 243 63 0 chr1 23512542 23512653 -258681011 - MIR SINE MIR -55 153 36 430 245 50 50 chr1 23512739 23512898 -258680766 - L1ME1 LINE L1 -68 6098 5940 * 530 276 36 20 chr1 23512883 23513079 -258680585 - L1M4 LINE L1 -1533 4613 4415 346 47 0 0 chr1 23513081 23513124 -258680540 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 2158 127 37 0 chr1 23513195 23513495 -258680169 + AluSx SINE Alu 1 311 -1 684 272 34 24 chr1 23513530 23513736 -258679928 - L2 LINE L2 -933 2381 2174 332 294 0 0 chr1 23513762 23513864 -258679800 + L1M4 LINE L1 3947 4048 -2098 306 250 67 50 chr1 23515788 23515908 -258677756 - L2 LINE L2 -1 3271 3150 196 257 0 0 chr1 23515921 23515956 -258677708 - L2 LINE L2 -27 3286 3252 186 204 68 0 chr1 23516119 23516163 -258677501 - L2 LINE L2 -21 3292 3246 256 260 31 52 chr1 23516425 23516521 -258677143 - MIR SINE MIR -73 189 96 1410 149 107 104 chr1 23516823 23516865 -258676799 - MER57A LTR ERV1 0 403 363 2085 104 0 0 chr1 23516865 23517157 -258676507 + AluSc SINE Alu 21 312 0 1410 149 107 104 chr1 23517157 23517368 -258676296 - MER57A LTR ERV1 -40 363 145 2417 109 0 0 chr1 23517368 23517680 -258675984 + AluSx SINE Alu 1 312 0 1410 149 107 104 chr1 23517680 23517826 -258675838 - MER57A LTR ERV1 -258 145 1 1373 124 58 35 chr1 23517826 23518083 -258675581 - MER57A-int LTR ERV1 0 7537 7275 567 178 16 47 chr1 23518085 23518200 -258675464 - LTR54B LTR ERV1 -369 129 17 2094 124 7 10 chr1 23518200 23518498 -258675166 - AluSx SINE Alu -15 297 1 567 178 16 47 chr1 23518498 23518511 -258675153 - LTR54B LTR ERV1 -481 17 5 721 33 11 0 chr1 23518512 23518602 -258675062 - MER57-int LTR ERV1 -390 7147 7057 191 324 14 0 chr1 23518645 23518719 -258674945 + MIR SINE MIR 38 112 -96 322 164 45 0 chr1 23519286 23519353 -258674311 + L1ME3 LINE L1 5975 6044 -118 1058 111 0 0 chr1 23519353 23519497 -258674167 - AluSp/q SINE Alu -12 301 158 181 321 0 0 chr1 23519747 23519800 -258673864 + MER5A DNA MER1_type 81 133 -56 1967 142 48 7 chr1 23519800 23520089 -258673575 - AluJo SINE Alu -11 301 1 2133 94 14 0 chr1 23520123 23520399 -258673265 - AluSx SINE Alu -32 280 1 238 219 203 0 chr1 23520455 23520519 -258673145 - MIR3 SINE MIR -38 170 94 347 304 43 0 chr1 23521505 23521620 -258672044 + MIR SINE MIR 1 120 -142 318 248 156 9 chr1 23522421 23522530 -258671134 - MIR SINE MIR -107 155 31 2539 74 0 6 chr1 23523003 23523314 -258670350 + AluY SINE Alu 1 309 -2 183 268 0 0 chr1 23523317 23523373 -258670291 - MIR SINE MIR -142 120 65 1129 175 5 0 chr1 23523572 23523778 -258669886 - MIR SINE MIR 0 262 56 274 224 90 0 chr1 23524035 23524102 -258669562 - MIR SINE MIR -94 114 42 189 226 57 0 chr1 23524671 23524724 -258668940 - MIR SINE MIR -72 136 81 353 241 271 8 chr1 23524893 23525026 -258668638 - MIR SINE MIR -21 241 74 2538 76 0 0 chr1 23525763 23526067 -258667597 + AluY SINE Alu 1 304 -7 476 237 89 30 chr1 23526145 23526280 -258667384 + MLT1K LTR MaLR 2 144 -444 415 236 113 28 chr1 23526365 23526557 -258667107 + MLT1K LTR MaLR 397 581 -7 344 292 28 26 chr1 23526983 23527154 -258666510 - MIR3 SINE MIR -63 145 8 1750 169 14 10 chr1 23527331 23527626 -258666038 - AluJo SINE Alu -16 296 1 454 304 209 0 chr1 23527849 23528079 -258665585 - L2 LINE L2 -3 3310 3033 1714 134 36 0 chr1 23528686 23528939 -258664725 + AluJb SINE Alu 3 264 -48 2321 112 0 10 chr1 23529007 23529319 -258664345 - AluSq SINE Alu -2 311 3 245 304 128 10 chr1 23529396 23529498 -258664166 + MIR SINE MIR 77 190 -72 665 228 18 24 chr1 23529661 23529828 -258663836 - MIR SINE MIR -90 172 7 585 274 36 18 chr1 23529941 23530109 -258663555 - MIR3 SINE MIR -2 206 36 2327 111 3 0 chr1 23530469 23530775 -258662889 + AluSx SINE Alu 1 307 -5 1761 135 7 18 chr1 23531592 23531702 -258661962 + AluJo SINE Alu 26 136 -176 2343 87 19 16 chr1 23531702 23532012 -258661652 + AluSx SINE Alu 1 311 -1 1761 135 7 18 chr1 23532012 23532182 -258661482 + AluJo SINE Alu 136 303 -9 2097 136 3 16 chr1 23532885 23533201 -258660463 + AluJb SINE Alu 1 312 0 1114 190 164 23 chr1 23533444 23533707 -258659957 + AluSg SINE Alu 1 300 0 1972 139 10 3 chr1 23533748 23534042 -258659622 + AluJb SINE Alu 17 312 0 1997 151 7 3 chr1 23534204 23534503 -258659161 + AluSq SINE Alu 1 300 -13 2413 70 3 0 chr1 23534721 23535043 -258658621 + AluSp SINE Alu 1 323 0 251 282 92 44 chr1 23535296 23535590 -258658074 + L1M4 LINE L1 2678 2985 -3161 2054 109 0 0 chr1 23535612 23535879 -258657785 + AluSx SINE Alu 1 267 -45 454 125 62 0 chr1 23535980 23536060 -258657604 + AluSg/x SINE Alu 219 303 -9 2326 87 0 0 chr1 23536193 23536482 -258657182 - AluSq SINE Alu -13 300 14 231 306 14 0 chr1 23536534 23536606 -258657058 + L2 LINE L2 3200 3272 0 332 282 8 34 chr1 23537557 23537674 -258655990 + MIR SINE MIR 12 125 -137 1080 166 6 0 chr1 23537691 23537860 -258655804 - FAM SINE Alu -5 170 1 2427 73 0 0 chr1 23537898 23538201 -258655463 + AluSg SINE Alu 1 303 -7 266 222 44 56 chr1 23538349 23538439 -258655225 + MIR SINE MIR 33 121 -141 522 228 38 99 chr1 23538803 23538878 -258654786 + MIR SINE MIR 37 115 -147 2005 113 0 41 chr1 23538878 23539197 -258654467 - AluSx SINE Alu -6 306 1 522 228 38 99 chr1 23539197 23539332 -258654332 + MIR SINE MIR 115 234 -28 204 306 14 0 chr1 23539752 23539824 -258653840 + MIR SINE MIR 176 248 -14 2371 63 0 10 chr1 23539827 23540129 -258653535 + AluY SINE Alu 1 299 -12 327 222 42 0 chr1 23540262 23540334 -258653330 - L2 LINE L2 0 3313 3239 184 294 0 0 chr1 23540377 23540428 -258653236 - L2 LINE L2 -52 3261 3211 2070 82 4 0 chr1 23540738 23541008 -258652656 + AluSx SINE Alu 24 294 -18 195 366 65 0 chr1 23541009 23541102 -258652562 - L2 LINE L2 -21 3292 3194 339 338 124 0 chr1 23541300 23541445 -258652219 + MIR SINE MIR 47 209 -53 1944 102 61 0 chr1 23541451 23541744 -258651920 + AluY SINE Alu 1 311 0 1708 146 9 25 chr1 23541769 23542085 -258651579 + AluJo SINE Alu 2 312 0 217 259 19 0 chr1 23542110 23542164 -258651500 - MIR SINE MIR -79 129 75 2031 140 0 0 chr1 23542385 23542685 -258650979 - AluSx SINE Alu -12 300 1 384 311 178 23 chr1 23543675 23543894 -258649770 + MIR SINE MIR 1 253 -9 535 267 106 6 chr1 23544253 23544414 -258649250 + MER117 DNA MER1_type 18 194 -3 333 187 13 0 chr1 23544480 23544555 -258649109 - MIR SINE MIR -141 121 46 385 267 227 0 chr1 23544815 23544987 -258648677 + MIR SINE MIR 47 257 -5 1848 157 57 11 chr1 23544987 23545337 -258648327 + MER47A DNA MER2_type 1 366 0 449 252 43 0 chr1 23545642 23545757 -258647907 + MIR SINE MIR 112 231 -31 1901 128 0 29 chr1 23546020 23546367 -258647297 + AluJo SINE Alu 1 338 0 2058 112 0 0 chr1 23546511 23546798 -258646866 + AluSx SINE Alu 1 287 -25 550 237 119 0 chr1 23546837 23546955 -258646709 + FLAM_C SINE Alu 2 133 -10 220 224 0 60 chr1 23547308 23547375 -258646289 + MIR3 SINE MIR 110 172 -36 666 243 103 35 chr1 23548228 23548487 -258645177 - Charlie8 DNA MER1_type -1000 1417 64 411 189 122 0 chr1 23548667 23548757 -258644907 - MIR SINE MIR -68 140 40 502 281 51 36 chr1 23548871 23549067 -258644597 + MIR3 SINE MIR 6 204 -4 258 32 0 0 chr1 23549109 23549140 -258644524 + (TAA)n Simple_repeat Simple_repeat 2 32 0 337 237 161 0 chr1 23549561 23549654 -258644010 - MIR SINE MIR -85 123 16 392 251 161 14 chr1 23549798 23549952 -258643712 - MIR3 SINE MIR -35 173 21 262 301 9 35 chr1 23550239 23550352 -258643312 + MIR3 SINE MIR 5 114 -94 344 309 79 7 chr1 23550745 23550884 -258642780 - MIR SINE MIR -37 225 77 372 257 64 28 chr1 23551026 23551135 -258642529 + L2 LINE L2 3196 3308 -5 281 201 277 55 chr1 23551519 23551649 -258642015 + MIR SINE MIR 8 161 -47 206 254 16 0 chr1 23552840 23552903 -258640761 + C-rich Low_complexity Low_complexity 1 64 0 262 146 24 12 chr1 23553073 23553155 -258640509 + C-rich Low_complexity Low_complexity 6 88 0 381 221 29 37 chr1 23553391 23553527 -258640137 + (TCTCTG)n Simple_repeat Simple_repeat 5 139 0 249 331 139 7 chr1 23553783 23553934 -258639730 + MIR SINE MIR 36 206 -56 260 149 43 0 chr1 23554095 23554142 -258639522 - L3 LINE CR1 -108 1469 1421 297 221 128 12 chr1 23554270 23554356 -258639308 - MIR3 SINE MIR -54 154 59 409 166 137 68 chr1 23554378 23554583 -258639081 - MER113 DNA MER1_type? -300 221 3 2002 138 0 7 chr1 23554838 23555142 -258638522 - AluJb SINE Alu -10 302 1 335 294 129 12 chr1 23555447 23555617 -258638047 + MIR3 SINE MIR 16 205 -3 246 254 151 38 chr1 23555750 23555924 -258637740 - MIR3 SINE MIR -56 152 8 870 203 0 0 chr1 23555993 23556151 -258637513 + FRAM SINE Alu 1 158 -18 2199 116 3 0 chr1 23556192 23556502 -258637162 + AluSx SINE Alu 1 311 -1 235 188 62 0 chr1 23556949 23556997 -258636667 - MIR SINE MIR -98 164 114 561 267 56 95 chr1 23557162 23557334 -258636330 - L2 LINE L2 -2 3311 3134 1914 108 0 44 chr1 23557334 23557655 -258636009 + AluSx SINE Alu 1 308 0 2030 90 0 11 chr1 23557655 23557934 -258635730 + AluSc SINE Alu 1 276 -33 198 71 0 0 chr1 23557942 23557970 -258635694 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 561 267 56 95 chr1 23557970 23558145 -258635519 - L2 LINE L2 -185 3128 2967 773 167 0 36 chr1 23558768 23558906 -258634758 + FLAM_A SINE Alu 1 133 0 6972 54 9 16 chr1 23558923 23560397 -258633267 + SVA Other Other 3 1386 0 257 336 82 14 chr1 23560556 23560764 -258632900 - L2 LINE L2 -1162 2152 1931 204 344 62 47 chr1 23560871 23560999 -258632665 - L2 LINE L2 -4 3268 3139 308 257 27 0 chr1 23561008 23561082 -258632582 - L1MB3 LINE L1 -227 5956 5881 252 59 0 0 chr1 23561106 23561140 -258632524 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2082 112 26 0 chr1 23561308 23561611 -258632053 - AluSx SINE Alu -1 311 1 2024 126 3 28 chr1 23561791 23562109 -258631555 - AluSx SINE Alu -2 310 1 314 267 35 79 chr1 23562977 23563063 -258630601 - MLT1K LTR MaLR -26 562 474 1703 132 0 135 chr1 23563063 23563412 -258630252 + AluJb SINE Alu 1 302 0 314 267 35 79 chr1 23563412 23563527 -258630137 - MLT1K LTR MaLR -114 474 370 264 167 0 0 chr1 23563569 23563617 -258630047 + A-rich Low_complexity Low_complexity 1 48 0 351 317 92 7 chr1 23563903 23564045 -258629619 - L1ME4a LINE L1 -5 6116 5963 390 236 211 12 chr1 23564107 23564268 -258629396 - MIR SINE MIR -1 261 69 698 228 85 16 chr1 23564711 23564900 -258628764 + MIR SINE MIR 24 225 -37 835 151 157 27 chr1 23565566 23565751 -258627913 + MSTC LTR MaLR 1 209 -219 977 161 0 0 chr1 23565772 23565927 -258627737 + FRAM SINE Alu 18 172 -4 1184 163 64 0 chr1 23565927 23566129 -258627535 + MSTC LTR MaLR 214 428 0 291 54 0 0 chr1 23566213 23566250 -258627414 + (CA)n Simple_repeat Simple_repeat 1 37 0 225 321 24 24 chr1 23567423 23567507 -258626157 + MIR3 SINE MIR 114 197 -11 2396 91 0 0 chr1 23567553 23567862 -258625802 - AluSx SINE Alu -3 309 1 282 56 0 0 chr1 23568485 23568521 -258625143 + (TC)n Simple_repeat Simple_repeat 2 37 0 2306 91 0 0 chr1 23568580 23568878 -258624786 + AluSg SINE Alu 1 298 -12 1898 161 0 3 chr1 23569326 23569624 -258624040 - AluJb SINE Alu -15 297 1 262 192 96 0 chr1 23569630 23569703 -258623961 + MER113 DNA MER1_type? 106 185 -336 250 286 24 0 chr1 23569752 23569836 -258623828 + MER113 DNA MER1_type? 381 466 -55 267 306 83 28 chr1 23569870 23569978 -258623686 + L2 LINE L2 3144 3257 -15 360 316 15 23 chr1 23570585 23570718 -258622946 + MIR3 SINE MIR 10 141 -67 1312 145 4 26 chr1 23570726 23570953 -258622711 + AluJo SINE Alu 12 233 -79 324 257 0 14 chr1 23570953 23571027 -258622637 - LTR28 LTR ERV1 0 1020 948 2583 218 137 33 chr1 23571077 23571892 -258621772 - LTR28 LTR ERV1 -69 951 3 512 117 0 0 chr1 23571893 23571970 -258621694 + AluJo SINE Alu 231 307 -5 1986 143 0 10 chr1 23572057 23572364 -258621300 - AluSx SINE Alu -8 304 1 2453 72 0 0 chr1 23572441 23572747 -258620917 - AluY SINE Alu -5 306 1 182 111 0 0 chr1 23572881 23572908 -258620756 - L2 LINE L2 -23 3290 3264 413 325 109 25 chr1 23573296 23573835 -258619829 + L2 LINE L2 2468 3058 -214 927 168 47 0 chr1 23573934 23574083 -258619581 - FRAM SINE Alu -9 157 2 1356 86 0 11 chr1 23574087 23574273 -258619391 - AluY SINE Alu -17 294 111 304 119 0 0 chr1 23624273 23624315 -258569349 - Alu SINE Alu -256 45 4 1005 150 4 78 chr1 23624461 23624701 -258568963 - AluJb SINE Alu -15 297 2 1528 158 26 0 chr1 23624703 23624937 -258568727 + AluJo SINE Alu 55 294 -18 732 102 39 8 chr1 23625589 23625716 -258567948 + AluSp/q SINE Alu 180 310 -3 251 263 86 40 chr1 23625775 23625973 -258567691 + L1ME LINE L1 5706 5912 -209 2616 226 69 3 chr1 23627152 23627757 -258565907 - MER82 DNA MER2_type -8 645 1 198 304 214 0 chr1 23627836 23627948 -258565716 + MIR3 SINE MIR 37 172 -36 21 0 0 0 chr1 23628021 23628042 -258565622 + AT_rich Low_complexity Low_complexity 1 21 0 40 37 0 0 chr1 23628742 23628796 -258564868 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr1 23630707 23630730 -258562934 + (CA)n Simple_repeat Simple_repeat 1 23 0 294 279 50 9 chr1 23630734 23630899 -258562765 - MLT1L LTR MaLR -60 528 353 227 274 0 0 chr1 23631508 23631570 -258562094 + MIR SINE MIR 82 143 -65 1351 186 39 81 chr1 23631859 23632241 -258561423 + MLT1A2 LTR MaLR 8 373 -1 1064 240 102 0 chr1 23632248 23632552 -258561112 - MER89 LTR ERV1 -24 535 201 446 266 70 0 chr1 23633022 23633150 -258560514 + MIR SINE MIR 123 259 -3 195 42 0 0 chr1 23633311 23633335 -258560329 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 1857 156 81 36 chr1 23634266 23634357 -258559307 - L1MB7 LINE L1 -314 5870 5785 1499 203 7 32 chr1 23634357 23634546 -258559118 - AluJo SINE Alu -10 302 123 2462 59 3 0 chr1 23634546 23634835 -258558829 + AluY SINE Alu 1 290 -21 1499 203 7 32 chr1 23634835 23634955 -258558709 - AluJo SINE Alu -189 123 1 1826 173 0 3 chr1 23634958 23635278 -258558386 - AluJo SINE Alu 0 319 1 1857 156 81 36 chr1 23635278 23635599 -258558065 - L1MB7 LINE L1 -400 5784 5434 1077 259 90 32 chr1 23635601 23636107 -258557557 - L2 LINE L2 -8 3305 2772 2411 105 0 3 chr1 23636108 23636421 -258557243 + AluSx SINE Alu 1 312 0 2352 108 22 40 chr1 23636654 23637025 -258556639 - THE1B LTR MaLR 0 364 1 2095 71 0 4 chr1 23637407 23637661 -258556003 - AluY SINE Alu -58 253 1 1344 144 36 0 chr1 23637661 23637855 -258555809 - AluSx SINE Alu -111 201 1 632 135 199 7 chr1 23637857 23637998 -258555666 + MLT1A1-int LTR MaLR 1563 1730 -5 1744 150 81 32 chr1 23638004 23638142 -258555522 + MLT1A1 LTR MaLR 3 133 -232 1847 184 3 3 chr1 23638142 23638431 -258555233 + AluJb SINE Alu 1 292 -20 207 0 0 0 chr1 23638431 23638454 -258555210 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1744 150 81 32 chr1 23638463 23638670 -258554994 + MLT1A1 LTR MaLR 133 365 0 481 143 0 41 chr1 23638671 23638769 -258554895 + L1MB5 LINE L1 6081 6174 0 1591 148 10 96 chr1 23638770 23639168 -258554496 + L1MB8 LINE L1 5815 6178 0 3966 132 17 22 chr1 23639189 23639757 -258553907 - MER41B LTR ERV1 0 635 68 2356 82 0 0 chr1 23639757 23640078 -258553586 - AluSg SINE Alu 0 321 1 3966 132 17 22 chr1 23640078 23640146 -258553518 - MER41B LTR ERV1 -567 68 1 11824 93 30 11 chr1 23640149 23641425 -258552239 - MER41B-int LTR ERV1 -2 5944 4621 2230 122 7 3 chr1 23641425 23641729 -258551935 + AluSx SINE Alu 1 305 -7 11824 93 30 11 chr1 23641729 23642242 -258551422 - MER41B-int LTR ERV1 -1325 4621 4120 2005 141 35 28 chr1 23643815 23644192 -258549472 - MER41B-int LTR ERV1 -1808 4138 3582 1958 113 7 29 chr1 23644192 23644466 -258549198 + AluSx SINE Alu 1 268 -44 2005 141 35 28 chr1 23644466 23644556 -258549108 - MER41B-int LTR ERV1 -2364 3582 3494 3864 136 5 0 chr1 23644565 23645166 -258548498 - LTR10E LTR ERV1 -29 604 1 15573 148 47 70 chr1 23645166 23645372 -258548292 - MER41B-int LTR ERV1 -2447 3499 3290 2461 93 3 0 chr1 23645372 23645683 -258547981 - AluSx SINE Alu 0 312 1 15573 148 47 70 chr1 23645683 23646273 -258547391 - MER41B-int LTR ERV1 -2656 3290 2688 2565 68 3 0 chr1 23646273 23646580 -258547084 - AluY SINE Alu -3 308 1 15573 148 47 70 chr1 23646580 23646619 -258547045 - MER41B-int LTR ERV1 -3258 2688 2650 2252 125 0 19 chr1 23646619 23646932 -258546732 - AluSx SINE Alu -5 307 1 15573 148 47 70 chr1 23646932 23647443 -258546221 - MER41B-int LTR ERV1 -3296 2650 2129 2430 88 0 10 chr1 23647443 23647751 -258545913 + AluSg SINE Alu 1 305 -5 15573 148 47 70 chr1 23647751 23648307 -258545357 - MER41B-int LTR ERV1 -3817 2129 1562 2180 117 7 0 chr1 23648307 23648606 -258545058 - AluSx SINE Alu -11 301 1 15573 148 47 70 chr1 23648606 23648744 -258544920 - MER41B-int LTR ERV1 -4384 1562 1422 1791 136 38 79 chr1 23648744 23649135 -258544529 + THE1C LTR MaLR 1 375 0 15573 148 47 70 chr1 23649135 23649519 -258544145 - MER41B-int LTR ERV1 -4524 1422 1031 2087 78 95 0 chr1 23649519 23649803 -258543861 + AluY SINE Alu 1 311 0 15573 148 47 70 chr1 23649803 23650628 -258543036 - MER41B-int LTR ERV1 -4915 1031 331 842 149 0 8 chr1 23650628 23650762 -258542902 - FLAM_C SINE Alu 0 133 1 15573 148 47 70 chr1 23650762 23651086 -258542578 - MER41B-int LTR ERV1 -5615 331 1 2471 144 9 19 chr1 23651086 23651157 -258542507 - MER41B LTR ERV1 0 635 565 2263 106 0 10 chr1 23651157 23651460 -258542204 + AluSx SINE Alu 1 300 -12 2471 144 9 19 chr1 23651460 23651811 -258541853 - MER41B LTR ERV1 -70 565 217 189 0 0 0 chr1 23651811 23651832 -258541832 + (T)n Simple_repeat Simple_repeat 1 21 0 6831 60 24 42 chr1 23651851 23652823 -258540841 - SVA Other Other 0 1386 433 5225 75 49 60 chr1 23652836 23654274 -258539390 - SVA Other Other -518 868 57 1028 31 0 8 chr1 23654274 23654403 -258539261 + (GGGAGA)n Simple_repeat Simple_repeat 1 128 0 1145 118 76 14 chr1 23654403 23654452 -258539212 - MER41B LTR ERV1 -411 224 179 2044 138 7 0 chr1 23654452 23654742 -258538922 - AluSx SINE Alu -20 292 1 1145 118 76 14 chr1 23654742 23654903 -258538761 - MER41B LTR ERV1 -456 179 1 414 202 83 101 chr1 23654906 23655031 -258538633 + L1MC4 LINE L1 7789 7912 -130 1016 164 5 59 chr1 23655031 23655109 -258538555 - MER3 DNA MER1_type 0 209 128 2202 77 7 14 chr1 23655109 23655396 -258538268 + AluY SINE Alu 23 307 -4 1016 164 5 59 chr1 23655396 23655536 -258538128 - MER3 DNA MER1_type -81 128 3 414 202 83 101 chr1 23655536 23655578 -258538086 + L1MC4 LINE L1 7912 7953 -89 1931 191 68 23 chr1 23655635 23656074 -258537590 + LTR2B LTR ERV1 32 490 0 3371 140 115 31 chr1 23656122 23656772 -258536892 + MER50 LTR ERV1 7 711 -23 550 269 0 21 chr1 23657050 23657195 -258536469 + MIR SINE MIR 29 170 -92 313 250 65 28 chr1 23657863 23657971 -258535693 + MIR SINE MIR 41 152 -110 386 213 147 88 chr1 23658018 23658063 -258535601 + MIR SINE MIR 119 160 -102 2258 90 0 0 chr1 23658063 23658368 -258535296 + AluSg SINE Alu 1 305 0 386 213 147 88 chr1 23658368 23658455 -258535209 + MIR SINE MIR 160 262 0 2201 131 0 0 chr1 23658466 23658764 -258534900 - AluSx SINE Alu -14 298 1 384 163 12 23 chr1 23658851 23658937 -258534727 + MER46C DNA MER2_type 30 114 -224 2503 60 3 16 chr1 23658961 23659276 -258534388 + AluY SINE Alu 1 311 0 465 215 0 0 chr1 23659340 23659433 -258534231 + MER46C DNA MER2_type 246 338 0 619 263 172 30 chr1 23659568 23659975 -258533689 - LTR67 LTR ERVL -9 548 84 551 258 93 44 chr1 23660198 23660423 -258533241 - MIR SINE MIR -20 242 7 511 252 7 7 chr1 23660423 23660558 -258533106 + MER117 DNA MER1_type 5 139 -58 869 245 61 0 chr1 23660559 23660837 -258532827 + L1 LINE L1 2649 2943 -3203 1038 170 0 0 chr1 23660837 23661002 -258532662 + FAM SINE Alu 10 174 -11 467 253 16 102 chr1 23661002 23661071 -258532593 + L1 LINE L1 2967 3040 -3106 2045 83 4 15 chr1 23661071 23661336 -258532328 + AluY SINE Alu 34 295 -16 467 253 16 102 chr1 23661336 23661510 -258532154 + L1 LINE L1 3040 3217 -2929 575 239 75 28 chr1 23661725 23661938 -258531726 - MLT1K LTR MaLR 0 588 366 236 217 29 29 chr1 23662024 23662093 -258531571 - MLT1K LTR MaLR -376 173 105 393 266 0 21 chr1 23662343 23662437 -258531227 + L1MC4 LINE L1 6615 6706 -1336 1955 155 0 14 chr1 23662437 23662734 -258530930 + AluJo SINE Alu 1 293 -19 306 218 35 58 chr1 23662734 23662749 -258530915 - L1MC3 LINE L1 -1209 6576 6562 2484 73 0 13 chr1 23662762 23663075 -258530589 - AluY SINE Alu -2 309 1 461 272 43 82 chr1 23663087 23663319 -258530345 - L1M4 LINE L1 -2145 4001 3779 1662 173 20 10 chr1 23663337 23663638 -258530026 + AluJo SINE Alu 1 304 -8 271 204 60 59 chr1 23663658 23663728 -258529936 - L1P LINE L1 -2383 3763 3695 252 0 0 0 chr1 23663728 23663756 -258529908 + (CTTTG)n Simple_repeat Simple_repeat 2 29 0 1885 147 0 3 chr1 23663760 23664045 -258529619 - AluJb SINE Alu -28 284 1 271 204 60 59 chr1 23664045 23664135 -258529529 - L1P LINE L1 -2453 3693 3606 200 382 0 45 chr1 23664364 23664474 -258529190 + MIR3 SINE MIR 104 208 0 1550 137 9 0 chr1 23664528 23664747 -258528917 + AluJb SINE Alu 83 303 -9 949 116 0 58 chr1 23665345 23665517 -258528147 - L1PA5 LINE L1 0 6154 5993 1147 92 0 12 chr1 23665522 23665686 -258527978 - L1PA5 LINE L1 0 6154 5993 1006 180 0 17 chr1 23665686 23665864 -258527800 - FRAM SINE Alu -2 174 1 1926 111 11 4 chr1 23666313 23666584 -258527080 - AluSq SINE Alu -40 273 1 465 204 43 0 chr1 23666621 23666714 -258526950 - MIR SINE MIR -77 185 89 1593 127 79 0 chr1 23666760 23666989 -258526675 - AluJo SINE Alu -32 280 34 2390 110 0 0 chr1 23667244 23667552 -258526112 - AluSx SINE Alu -4 308 1 258 322 11 0 chr1 23667557 23667644 -258526020 - MIR SINE MIR -60 148 61 204 322 63 42 chr1 23667749 23667892 -258525772 - MIR SINE MIR -71 191 46 519 230 22 7 chr1 23667925 23668060 -258525604 - L2 LINE L2 -7 3306 3170 213 262 98 16 chr1 23668091 23668152 -258525512 + L3 LINE CR1 574 639 -938 180 111 0 0 chr1 23668384 23668411 -258525253 + (GGAA)n Simple_repeat Simple_repeat 4 30 0 2149 121 0 7 chr1 23668547 23668844 -258524820 - AluSx SINE Alu -17 295 1 2371 157 60 27 chr1 23668856 23668930 -258524734 - L1MB7 LINE L1 0 6184 6114 2574 58 0 10 chr1 23668930 23669241 -258524423 - AluY SINE Alu -3 308 1 2371 157 60 27 chr1 23669241 23669651 -258524013 - L1MB7 LINE L1 -70 6114 5684 1779 158 14 11 chr1 23669654 23669939 -258523725 - AluJo SINE Alu -10 302 17 1464 159 60 19 chr1 23669945 23669965 -258523699 - L1MB7 LINE L1 -1 6183 6165 2370 98 0 0 chr1 23669965 23670260 -258523404 + AluSq SINE Alu 1 295 -18 1464 159 60 19 chr1 23670260 23670553 -258523111 - L1MB7 LINE L1 -19 6165 5857 991 144 7 0 chr1 23670668 23670814 -258522850 + AluSx SINE Alu 58 204 -108 7881 118 8 2 chr1 23670814 23671956 -258521708 + THE1A-int LTR MaLR 432 1580 0 2446 102 11 8 chr1 23671956 23672308 -258521356 + THE1A LTR MaLR 1 353 -2 729 184 9 0 chr1 23672309 23672423 -258521241 - AluJb SINE Alu -197 115 1 256 236 34 45 chr1 23672423 23672512 -258521152 + L1MC4 LINE L1 7815 7902 -140 2592 56 0 13 chr1 23672637 23672942 -258520722 + AluSp SINE Alu 1 301 -12 394 306 68 38 chr1 23672951 23673186 -258520478 + L1M2 LINE L1 4428 4669 -1477 646 151 118 34 chr1 23673194 23673313 -258520351 + FLAM_C SINE Alu 3 131 -2 306 77 0 0 chr1 23673358 23673397 -258520267 - MER4A LTR ERV1 -72 592 554 379 322 48 26 chr1 23673442 23674042 -258519622 + L1M2 LINE L1 4824 5435 -749 297 0 0 0 chr1 23674288 23674321 -258519343 + (TA)n Simple_repeat Simple_repeat 2 34 0 2399 143 2 27 chr1 23674403 23674815 -258518849 + L1MC1 LINE L1 5450 5851 -482 2539 56 0 16 chr1 23674815 23675118 -258518546 + AluY SINE Alu 1 298 -13 189 0 0 0 chr1 23675212 23675233 -258518431 + (CTGGGG)n Simple_repeat Simple_repeat 2 22 0 231 276 13 13 chr1 23675233 23675304 -258518360 - L2 LINE L2 -778 2536 2466 2100 121 3 33 chr1 23675346 23675653 -258518011 + AluSx SINE Alu 1 298 -14 222 37 0 0 chr1 23676627 23676654 -258517010 + (TG)n Simple_repeat Simple_repeat 1 27 0 370 303 35 35 chr1 23677302 23677427 -258516237 - L1ME4a LINE L1 -11 6110 5983 2398 106 0 0 chr1 23677427 23677738 -258515926 - AluSq SINE Alu -2 311 1 370 303 35 35 chr1 23677738 23677754 -258515910 - L1ME4a LINE L1 -137 5984 5969 2382 90 3 0 chr1 23677924 23678224 -258515440 - AluY SINE Alu -10 301 1 21 0 0 0 chr1 23678224 23678245 -258515419 + AT_rich Low_complexity Low_complexity 1 21 0 1239 159 72 0 chr1 23678535 23678743 -258514921 - AluJo SINE Alu -15 297 75 228 241 19 0 chr1 23678795 23678849 -258514815 - L1ME4a LINE L1 -699 5660 5606 524 259 103 84 chr1 23678859 23678900 -258514764 - L1ME4a LINE L1 -229 5892 5853 2045 113 13 13 chr1 23678900 23679209 -258514455 - AluSx SINE Alu -2 310 2 524 259 103 84 chr1 23679209 23679488 -258514176 - L1ME4a LINE L1 -268 5853 5566 1419 173 36 28 chr1 23679654 23679770 -258513894 - AluJb SINE Alu -62 250 136 2629 36 7 0 chr1 23679770 23680071 -258513593 - AluY SINE Alu -8 303 1 1419 173 36 28 chr1 23680071 23680202 -258513462 - AluJb SINE Alu -176 136 1 935 203 15 71 chr1 23680202 23680336 -258513328 + L1MB8 LINE L1 5917 6030 -148 2220 77 13 37 chr1 23680336 23680634 -258513030 - AluY SINE Alu -8 303 13 935 203 15 71 chr1 23680634 23680765 -258512899 + L1MB8 LINE L1 6030 6167 -11 1730 138 47 25 chr1 23680775 23680918 -258512746 + AluJo SINE Alu 1 139 -173 1824 153 0 88 chr1 23680918 23681258 -258512406 + AluJb SINE Alu 3 312 0 1043 168 62 43 chr1 23681196 23681405 -258512259 + AluJo SINE Alu 85 297 -15 1730 138 47 25 chr1 23681258 23681390 -258512274 + AluJo SINE Alu 139 282 -30 303 273 71 71 chr1 23681409 23681512 -258512152 - L2 LINE L2 -69 3244 3143 2498 90 7 0 chr1 23681512 23681822 -258511842 + AluSq SINE Alu 1 312 -1 303 273 71 71 chr1 23681822 23681985 -258511679 - L2 LINE L2 -170 3143 2989 428 316 0 9 chr1 23682814 23682928 -258510736 - MER5B DNA MER1_type -65 113 1 235 162 0 0 chr1 23682928 23682962 -258510702 - MIR3 SINE MIR -53 155 122 1719 149 22 7 chr1 23682966 23683277 -258510387 + AluJb SINE Alu 6 320 0 510 281 7 14 chr1 23683420 23683566 -258510098 + MIR SINE MIR 15 159 -103 1817 141 3 33 chr1 23683901 23684207 -258509457 + AluSx SINE Alu 1 297 -15 290 392 7 40 chr1 23684610 23684758 -258508906 + L3 LINE CR1 1434 1576 -1 240 59 0 0 chr1 23684825 23684859 -258508805 + (A)n Simple_repeat Simple_repeat 1 34 0 736 159 7 43 chr1 23685066 23685204 -258508460 + FLAM_A SINE Alu 1 133 0 2100 125 0 7 chr1 23685224 23685520 -258508144 + AluSx SINE Alu 1 294 -18 858 223 45 18 chr1 23685603 23685823 -258507841 + MIR SINE MIR 37 262 0 180 0 0 0 chr1 23685950 23685970 -258507694 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1073 121 148 157 chr1 23686552 23686676 -258506988 - AluJo SINE Alu 0 302 178 2290 85 7 3 chr1 23686676 23686983 -258506681 - AluSc SINE Alu -1 308 1 1073 121 148 157 chr1 23686983 23687015 -258506649 - AluJo SINE Alu -124 178 147 2366 100 0 0 chr1 23687015 23687325 -258506339 + AluSq SINE Alu 1 310 -3 1073 121 148 157 chr1 23687325 23687472 -258506192 - AluJo SINE Alu -155 147 1 816 238 92 55 chr1 23688476 23688804 -258504860 + MLT1K LTR MaLR 164 503 -85 572 267 28 44 chr1 23689069 23689249 -258504415 + MIR SINE MIR 76 252 -10 1764 102 12 0 chr1 23689728 23689983 -258503681 - AluSx SINE Alu 0 312 55 2053 116 13 7 chr1 23689996 23690299 -258503365 - AluSx SINE Alu -7 305 1 566 234 119 13 chr1 23690314 23690540 -258503124 - L1ME3A LINE L1 -5 6165 5916 398 274 67 7 chr1 23690593 23690728 -258502936 - MIR SINE MIR -62 200 58 360 0 0 0 chr1 23692316 23692356 -258501308 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 232 21 21 chr1 23692380 23692475 -258501189 + (CA)n Simple_repeat Simple_repeat 2 96 0 354 169 0 0 chr1 23692581 23692646 -258501018 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 0 0 0 chr1 23692961 23692983 -258500681 + GC_rich Low_complexity Low_complexity 1 22 0 374 329 43 19 chr1 23694783 23694944 -258498720 + MIR SINE MIR 8 172 -90 222 170 0 21 chr1 23695394 23695441 -258498223 - L2 LINE L2 -211 3061 3016 488 55 0 14 chr1 23695883 23695956 -258497708 + (TG)n Simple_repeat Simple_repeat 2 73 0 288 284 0 0 chr1 23696161 23696242 -258497422 - MIR SINE MIR -87 121 41 304 331 124 0 chr1 23696384 23696553 -258497111 + MIR SINE MIR 1 190 -72 834 143 8 0 chr1 23696595 23696721 -258496943 + FLAM_C SINE Alu 3 129 -4 390 317 91 41 chr1 23697190 23697685 -258495979 - L2 LINE L2 0 3272 2736 1819 121 31 7 chr1 23697685 23697974 -258495690 - AluSx SINE Alu -16 296 1 390 317 91 41 chr1 23697974 23698128 -258495536 - L2 LINE L2 -536 2736 2591 270 269 231 0 chr1 23698936 23699044 -258494620 - MIR SINE MIR -19 243 111 285 250 0 0 chr1 23699326 23699386 -258494278 - MIR SINE MIR -119 89 30 376 316 44 7 chr1 23699800 23699936 -258493728 + MIR3 SINE MIR 50 190 -18 632 306 48 10 chr1 23699947 23700156 -258493508 + MIR SINE MIR 3 219 -43 260 372 48 30 chr1 23700673 23700904 -258492760 + MIR SINE MIR 28 262 0 833 264 160 24 chr1 23700969 23701468 -258492196 - L1ME2 LINE L1 0 6164 5598 1612 91 0 183 chr1 23701468 23701693 -258491971 - AluSc SINE Alu -5 304 172 2247 57 0 11 chr1 23701693 23701972 -258491692 - AluY SINE Alu -35 276 1 1612 91 0 183 chr1 23701972 23702118 -258491546 - AluSc SINE Alu -137 172 1 1693 155 10 17 chr1 23702128 23702424 -258491240 - AluJo SINE Alu -10 302 9 333 241 0 35 chr1 23702616 23702703 -258490961 + MIR3 SINE MIR 71 154 -54 285 312 19 13 chr1 23702966 23703098 -258490566 + MIR SINE MIR 34 135 -73 * 387 308 143 29 chr1 23703095 23703654 -258490010 - L2 LINE L2 -59 3254 2640 477 273 168 6 chr1 23704251 23704412 -258489252 - MIR3 SINE MIR -3 205 19 678 261 42 50 chr1 23704425 23704666 -258488998 + MIR SINE MIR 24 262 0 2236 98 0 7 chr1 23704684 23704981 -258488683 - AluSx SINE Alu -17 295 1 477 311 108 19 chr1 23705352 23705564 -258488100 + MIR SINE MIR 2 232 -30 873 131 12 6 chr1 23705773 23705941 -258487723 + C-rich Low_complexity Low_complexity 1 169 0 800 270 52 20 chr1 23705947 23706195 -258487469 + MIR SINE MIR 7 262 0 184 188 0 104 chr1 23706395 23706443 -258487221 + L2 LINE L2 421 463 -2851 908 252 43 4 chr1 23706691 23706921 -258486743 - MIR SINE MIR 0 262 24 1577 144 30 46 chr1 23706921 23707099 -258486565 - AluJb SINE Alu -12 300 128 2242 97 0 10 chr1 23707099 23707410 -258486254 - AluSc SINE Alu -1 308 1 1577 144 30 46 chr1 23707410 23707536 -258486128 - AluJb SINE Alu -184 128 1 203 343 0 14 chr1 23707904 23707974 -258485690 - L2 LINE L2 -82 3190 3122 1994 132 23 7 chr1 23708000 23708304 -258485360 + AluSx SINE Alu 1 309 -3 216 0 0 0 chr1 23708373 23708397 -258485267 + (A)n Simple_repeat Simple_repeat 1 24 0 219 184 0 0 chr1 23708451 23708500 -258485164 - L2 LINE L2 -238 3034 2986 * 356 241 39 42 chr1 23708487 23708597 -258485067 - MIR SINE MIR -122 86 3 535 321 37 27 chr1 23708909 23709096 -258484568 - MIR SINE MIR -52 210 22 521 309 23 17 chr1 23709232 23709407 -258484257 - MER5A DNA MER1_type 0 189 14 362 236 104 9 chr1 23709594 23709700 -258483964 - MIR SINE MIR -74 134 19 2358 93 0 3 chr1 23709741 23710051 -258483613 - AluSq SINE Alu -4 309 1 225 195 0 0 chr1 23710119 23710160 -258483504 - MIR SINE MIR -3 259 219 222 215 200 0 chr1 23710128 23710193 -258483471 - L2 LINE L2 -18 3254 3177 * 328 308 180 21 chr1 23710278 23710422 -258483242 - L2 LINE L2 -220 3052 2932 1767 106 26 162 chr1 23710422 23710810 -258482854 - MER1B DNA MER1_type 0 337 3 328 308 180 21 chr1 23710810 23711169 -258482495 - L2 LINE L2 -340 2932 2480 216 240 30 60 chr1 23711173 23711273 -258482391 - MIR SINE MIR -60 148 52 620 261 28 17 chr1 23712764 23712940 -258480724 - MIR SINE MIR -6 256 79 928 171 6 45 chr1 23714231 23714407 -258479257 + FAM SINE Alu 2 170 -5 2079 125 0 13 chr1 23714409 23714720 -258478944 + AluSx SINE Alu 1 307 -5 532 250 59 86 chr1 23714724 23714861 -258478803 + L2 LINE L2 3077 3216 -97 333 0 0 0 chr1 23714861 23714898 -258478766 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 844 232 7 0 chr1 23714901 23715052 -258478612 - FRAM SINE Alu -14 152 1 532 250 59 86 chr1 23715052 23715130 -258478534 + L2 LINE L2 3218 3290 -23 249 226 95 12 chr1 23716330 23716414 -258477250 + MIR3 SINE MIR 100 190 -18 349 292 48 48 chr1 23716511 23716619 -258477045 + MIR SINE MIR 46 153 -109 2228 83 0 0 chr1 23716619 23716895 -258476769 + AluSx SINE Alu 5 280 -32 234 0 0 0 chr1 23716895 23716921 -258476743 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 349 292 48 48 chr1 23716921 23717024 -258476640 + MIR SINE MIR 151 259 -3 700 293 20 10 chr1 23717325 23717523 -258476141 + MIR SINE MIR 20 219 -43 592 224 138 15 chr1 23717817 23718013 -258475651 + MIR SINE MIR 8 227 -35 360 328 107 28 chr1 23718119 23718296 -258475368 - MIR SINE MIR -13 249 59 1292 153 56 0 chr1 23718384 23718600 -258475064 - MER30 DNA MER1_type -2 228 1 2002 125 3 3 chr1 23719173 23719468 -258474196 - AluSx SINE Alu -17 295 1 300 313 80 0 chr1 23719916 23720028 -258473636 - MIR3 SINE MIR -1 207 87 204 327 19 56 chr1 23721169 23721276 -258472388 - MIR SINE MIR -34 228 126 597 77 0 0 chr1 23721546 23721624 -258472040 - AluS SINE Alu -235 78 1 294 333 29 11 chr1 23721733 23721907 -258471757 - L1ME LINE L1 -326 5844 5668 2236 103 0 16 chr1 23721957 23722269 -258471395 + AluSx SINE Alu 1 307 -5 275 278 67 11 chr1 23722355 23722445 -258471219 + L2 LINE L2 3200 3294 -19 301 320 238 6 chr1 23722466 23722638 -258471026 - MIR SINE MIR -31 231 20 2196 113 13 0 chr1 23722718 23723019 -258470645 - AluSx SINE Alu -7 305 1 538 270 37 5 chr1 23723278 23723466 -258470198 + MIR SINE MIR 34 235 -27 303 315 11 0 chr1 23723541 23723630 -258470034 - L2 LINE L2 -207 3065 2976 454 293 149 2 chr1 23724297 23724495 -258469169 + MIR SINE MIR 33 256 -6 602 236 82 11 chr1 23724718 23724900 -258468764 - MIR SINE MIR -55 207 13 568 274 28 17 chr1 23725427 23725606 -258468058 + MIR SINE MIR 9 189 -73 582 302 16 0 chr1 23725617 23725799 -258467865 - MIR SINE MIR -44 218 34 936 193 0 6 chr1 23725893 23726064 -258467600 - AluJo/FRAM SINE Alu -9 303 134 1714 170 0 26 chr1 23726064 23726370 -258467294 - AluJo SINE Alu -9 303 6 26 0 0 27 chr1 23726374 23726389 -258467275 + AT_rich Low_complexity Low_complexity 1 15 -21 2226 113 3 0 chr1 23726389 23726689 -258466975 - AluSx SINE Alu -11 301 1 26 0 0 27 chr1 23726689 23726710 -258466954 + AT_rich Low_complexity Low_complexity 15 36 0 1875 132 17 7 chr1 23726710 23726998 -258466666 - AluJb SINE Alu -21 291 1 972 113 0 0 chr1 23727007 23727140 -258466524 - FLAM_C SINE Alu 0 133 1 355 290 119 15 chr1 23727956 23728225 -258465439 + MLT1K LTR MaLR 37 333 -255 2498 34 3 34 chr1 23728436 23728757 -258464907 + AluY SINE Alu 1 311 0 1062 240 32 0 chr1 23729056 23729277 -258464387 - MIR SINE MIR -21 241 14 378 263 0 0 chr1 23729849 23729925 -258463739 - MIR SINE MIR -111 151 76 236 284 86 60 chr1 23730312 23730428 -258463236 - L2 LINE L2 -237 3035 2917 511 292 22 49 chr1 23731016 23731201 -258462463 - MIR SINE MIR -14 248 69 289 263 173 30 chr1 23731525 23731658 -258462006 + MIR3 SINE MIR 2 153 -55 466 268 101 24 chr1 23731770 23731898 -258461766 + MIR SINE MIR 12 164 -98 2241 68 13 23 chr1 23731898 23732205 -258461459 + AluSq SINE Alu 1 304 -9 466 268 101 24 chr1 23732205 23732285 -258461379 + MIR SINE MIR 164 236 -26 474 226 58 22 chr1 23732287 23732424 -258461240 + L2 LINE L2 3172 3313 0 253 236 0 0 chr1 23733157 23733212 -258460452 - L2 LINE L2 0 3272 3218 767 215 105 11 chr1 23733299 23733490 -258460174 + MER3 DNA MER1_type 1 209 0 238 300 50 0 chr1 23733632 23733712 -258459952 - Charlie8 DNA MER1_type -1956 461 378 885 178 75 54 chr1 23733713 23733954 -258459710 - L1ME2 LINE L1 0 6164 5919 637 292 77 50 chr1 23733956 23734185 -258459479 - Charlie8 DNA MER1_type -2030 387 166 2514 55 0 3 chr1 23734185 23734497 -258459167 - AluY SINE Alu 0 311 1 637 292 77 50 chr1 23734497 23734580 -258459084 - Charlie8 DNA MER1_type -2251 166 87 1884 153 0 7 chr1 23734580 23734887 -258458777 + AluSx SINE Alu 1 305 -7 637 292 77 50 chr1 23734887 23734950 -258458714 - Charlie8 DNA MER1_type -2330 87 1 808 277 77 8 chr1 23734977 23735212 -258458452 - MIR SINE MIR 0 262 12 206 323 15 0 chr1 23735988 23736053 -258457611 + MIR SINE MIR 197 262 0 * 374 256 62 56 chr1 23736035 23736195 -258457469 - MIR SINE MIR -49 213 53 227 333 14 0 chr1 23736170 23736242 -258457422 + MIR SINE MIR 165 237 -25 * 417 240 30 0 chr1 23736532 23736632 -258457032 + MIR SINE MIR 80 182 -80 1842 131 12 44 chr1 23736676 23736996 -258456668 - AluJb SINE Alu -1 311 2 2281 39 7 3 chr1 23737008 23737318 -258456346 - AluY SINE Alu 0 311 1 320 282 40 9 chr1 23737573 23737750 -258455914 - MIR SINE MIR 0 262 18 2009 136 0 3 chr1 23737795 23738090 -258455574 + AluSx SINE Alu 1 294 -18 311 285 54 23 chr1 23738117 23738247 -258455417 - MIR SINE MIR -50 212 79 588 153 105 0 chr1 23738744 23738868 -258454796 - MIR SINE MIR -37 225 89 220 324 29 48 chr1 23738947 23739052 -258454612 - MIR SINE MIR -90 118 16 481 266 72 14 chr1 23739080 23739219 -258454445 + MIR SINE MIR 56 202 -60 368 271 0 0 chr1 23739775 23739860 -258453804 + MIR SINE MIR 47 131 -131 381 320 6 70 chr1 23739949 23740121 -258453543 - MIR SINE MIR -22 240 80 1734 167 6 13 chr1 23740391 23740702 -258452962 + AluJo SINE Alu 1 309 -3 2208 98 0 16 chr1 23740706 23741011 -258452653 + AluSx SINE Alu 13 312 0 351 259 35 0 chr1 23741825 23741910 -258451754 + MIR SINE MIR 94 181 -81 1655 172 7 17 chr1 23741964 23742289 -258451375 - AluJo SINE Alu 0 336 15 259 275 38 21 chr1 23742604 23742734 -258450930 - MIR SINE MIR -67 141 19 708 211 0 0 chr1 23743168 23743301 -258450363 - FLAM_A SINE Alu 0 133 1 791 205 58 44 chr1 23743302 23743507 -258450157 - MIR SINE MIR -50 212 5 222 269 26 13 chr1 23744342 23744420 -258449244 + MIR SINE MIR 18 96 -112 211 355 0 64 chr1 23744466 23744576 -258449088 + MIR SINE MIR 51 153 -109 267 291 94 8 chr1 23745319 23745436 -258448228 + MIR SINE MIR 90 216 -46 388 291 160 57 chr1 23745838 23746350 -258447314 - L2 LINE L2 -9 3304 2846 1625 159 36 17 chr1 23746350 23746530 -258447134 - AluJb SINE Alu -5 307 117 206 32 32 0 chr1 23746530 23746561 -258447103 + (TA)n Simple_repeat Simple_repeat 2 33 0 1625 159 36 17 chr1 23746561 23746681 -258446983 - AluJb SINE Alu -195 117 1 388 291 160 57 chr1 23746681 23746693 -258446971 - L2 LINE L2 -467 2846 2837 2004 128 0 17 chr1 23746693 23746991 -258446673 - AluSx SINE Alu -19 293 1 388 291 160 57 chr1 23746991 23747084 -258446580 - L2 LINE L2 -476 2837 2617 201 260 167 0 chr1 23747041 23747137 -258446527 + MIR SINE MIR 21 132 -76 * 27 81 0 0 chr1 23748171 23748233 -258445431 + GC_rich Low_complexity Low_complexity 1 62 0 31 0 0 0 chr1 23748264 23748295 -258445369 + GC_rich Low_complexity Low_complexity 1 31 0 212 174 0 22 chr1 23748531 23748577 -258445087 + C-rich Low_complexity Low_complexity 2 46 0 349 241 0 46 chr1 23748835 23748922 -258444742 - MER81 DNA DNA -31 83 1 345 268 26 74 chr1 23749567 23749757 -258443907 - MIR SINE MIR -41 221 41 292 289 126 0 chr1 23750033 23750162 -258443502 + MIR SINE MIR 11 154 -54 2107 102 0 0 chr1 23750975 23751287 -258442377 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 23751497 23751518 -258442146 + AT_rich Low_complexity Low_complexity 1 21 0 1847 117 62 7 chr1 23751585 23751876 -258441788 - AluJb SINE Alu 0 312 6 417 340 75 20 chr1 23751953 23752153 -258441511 + MIR SINE MIR 23 233 -29 2179 125 3 0 chr1 23752510 23752821 -258440843 - AluSx SINE Alu 0 312 1 1062 142 6 6 chr1 23752821 23752990 -258440674 - FRAM SINE Alu -10 166 1 255 197 182 0 chr1 23753138 23753204 -258440460 - MIR SINE MIR -56 152 75 312 266 0 57 chr1 23753971 23754095 -258439569 + CT-rich Low_complexity Low_complexity 1 117 0 182 233 23 0 chr1 23754916 23754959 -258438705 + MIR SINE MIR 141 184 -78 2283 86 0 19 chr1 23754960 23755275 -258438389 + AluSx SINE Alu 1 309 -3 2239 90 0 13 chr1 23755286 23755596 -258438068 + AluY SINE Alu 1 306 -5 204 296 0 28 chr1 23755684 23755755 -258437909 + CT-rich Low_complexity Low_complexity 1 69 0 2164 128 0 0 chr1 23755913 23756225 -258437439 - AluSx SINE Alu 0 312 1 1952 139 0 10 chr1 23756225 23756526 -258437138 - AluJb SINE Alu -14 298 1 1990 84 0 0 chr1 23756566 23756846 -258436818 + AluSg SINE Alu 31 310 0 315 0 0 0 chr1 23757304 23757339 -258436325 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2102 92 0 3 chr1 23757341 23757624 -258436040 - AluSx SINE Alu -30 282 1 284 286 0 12 chr1 23758055 23758139 -258435525 + L2 LINE L2 2973 3055 -217 383 243 53 45 chr1 23758576 23758747 -258434917 + MIR SINE MIR 28 144 -64 423 267 89 14 chr1 23759537 23759683 -258433981 + MIR SINE MIR 47 203 -59 333 239 64 9 chr1 23759867 23759976 -258433688 - MIR SINE MIR -53 209 95 189 217 43 0 chr1 23760725 23760771 -258432893 + L2 LINE L2 3264 3311 -2 211 218 18 0 chr1 23760910 23760965 -258432699 + (TG)n Simple_repeat Simple_repeat 1 56 0 1679 117 23 99 chr1 23761513 23761855 -258431809 + AluYb8 SINE Alu 1 316 -2 294 289 107 91 chr1 23762180 23762205 -258431459 - L2 LINE L2 -2 3270 3247 2163 100 23 3 chr1 23762205 23762504 -258431160 + AluSx SINE Alu 1 305 -7 294 289 107 91 chr1 23762504 23762731 -258430933 - L2 LINE L2 -25 3247 3014 2320 84 0 0 chr1 23762920 23763218 -258430446 - AluSq SINE Alu -15 298 1 408 295 39 32 chr1 23764009 23764165 -258429499 - MIR SINE MIR -78 184 28 286 249 141 60 chr1 23764282 23764467 -258429197 + MIR SINE MIR 24 223 -39 742 143 0 0 chr1 23764686 23764798 -258428866 - AluSp/q SINE Alu -41 272 161 378 108 0 4 chr1 23764800 23764866 -258428798 - Alu SINE Alu -250 50 2 444 174 0 0 chr1 23765148 23765240 -258428424 + (CA)n Simple_repeat Simple_repeat 2 93 0 203 152 0 0 chr1 23765282 23765315 -258428349 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2230 97 0 3 chr1 23765939 23766237 -258427427 + AluSx SINE Alu 1 297 -15 560 304 89 8 chr1 23766239 23766476 -258427188 + MIR SINE MIR 3 258 -4 475 231 131 6 chr1 23767669 23767829 -258425835 + MIR SINE MIR 47 226 -36 226 301 203 8 chr1 23767973 23768096 -258425568 - MIR3 SINE MIR -59 149 3 440 276 51 19 chr1 23768208 23768364 -258425300 - MIR SINE MIR -32 230 70 485 294 38 80 chr1 23768671 23768909 -258424755 + MIR SINE MIR 21 248 -14 273 349 27 34 chr1 23768938 23769084 -258424580 + MIR SINE MIR 49 193 -69 363 314 131 11 chr1 23769181 23769372 -258424292 - MIR SINE MIR -48 214 1 190 255 21 0 chr1 23769954 23770001 -258423663 + MIR SINE MIR 69 116 -92 1419 177 55 50 chr1 23770857 23770901 -258422763 - MLT1A1 LTR MaLR -2 363 321 2555 105 5 30 chr1 23770901 23771274 -258422390 + THE1B LTR MaLR 1 364 0 1419 177 55 50 chr1 23771274 23771590 -258422074 - MLT1A1 LTR MaLR -44 321 1 208 275 88 38 chr1 23771693 23771773 -258421891 + MIR SINE MIR 30 113 -95 291 305 62 23 chr1 23771881 23772009 -258421655 + MIR SINE MIR 50 182 -80 2091 108 0 0 chr1 23772982 23773270 -258420394 - AluSx SINE Alu -13 299 12 612 277 89 57 chr1 23773337 23773673 -258419991 - L2 LINE L2 -1 3312 2966 244 209 0 0 chr1 23773741 23773802 -258419862 - MER106A DNA MER1_type -76 160 118 2251 85 0 0 chr1 23773916 23774210 -258419454 + AluSx SINE Alu 1 294 -18 277 268 232 72 chr1 23774297 23774603 -258419061 + L2 LINE L2 2306 2660 -654 2283 95 3 0 chr1 23774877 23775183 -258418481 + AluSc SINE Alu 1 307 -2 322 308 42 17 chr1 23776836 23776956 -258416708 - L2 LINE L2 -18 3254 3132 226 244 192 13 chr1 23777064 23777142 -258416522 + L2 LINE L2 3200 3291 -22 247 330 75 28 chr1 23777927 23778139 -258415525 - MIR SINE MIR -9 253 32 267 303 21 7 chr1 23778406 23778551 -258415113 + (TG)n Simple_repeat Simple_repeat 1 147 0 1466 171 15 11 chr1 23778990 23779253 -258414411 + AluJo SINE Alu 27 290 -22 345 284 0 0 chr1 23779568 23779649 -258414015 - MIR SINE MIR -85 123 43 450 292 13 2 chr1 23780263 23780414 -258413250 + MIR SINE MIR 16 166 -65 431 319 21 0 chr1 23780483 23780624 -258413040 - MIR SINE MIR -50 212 69 458 281 62 28 chr1 23781316 23781494 -258412170 - MIR SINE MIR -58 204 21 184 397 121 20 chr1 23781605 23781804 -258411860 - L2 LINE L2 -51 3221 3003 2095 123 0 7 chr1 23781955 23782257 -258411407 - AluSx SINE Alu -12 300 1 509 307 20 7 chr1 23782639 23782792 -258410872 - MIR SINE MIR -39 223 69 290 172 0 24 chr1 23784180 23784246 -258409418 - Alu SINE Alu -259 43 1 2412 87 0 0 chr1 23784432 23784742 -258408922 - AluSg SINE Alu 0 310 1 2297 69 0 3 chr1 23784747 23785050 -258408614 - AluY SINE Alu -9 302 1 2215 88 0 0 chr1 23785174 23785496 -258408168 + AluSx SINE Alu 1 322 0 2095 115 0 10 chr1 23786995 23787300 -258406364 - AluSx SINE Alu -9 303 2 273 289 29 32 chr1 23787428 23787509 -258406155 + MIR SINE MIR 47 126 -115 2259 74 0 0 chr1 23787509 23787805 -258405859 - AluY SINE Alu -15 296 1 273 289 29 32 chr1 23787805 23787864 -258405800 + MIR SINE MIR 126 184 -57 196 212 30 61 chr1 23788059 23788125 -258405539 - MIR SINE MIR -2 260 197 1611 129 30 75 chr1 23788252 23788452 -258405212 + L1MB3 LINE L1 5857 6064 -119 1969 122 3 29 chr1 23788452 23788764 -258404900 + AluSx SINE Alu 1 304 -8 1611 129 30 75 chr1 23788764 23788837 -258404827 + L1MB3 LINE L1 6064 6115 -68 1581 164 61 11 chr1 23788837 23789117 -258404547 - AluJb SINE Alu -18 294 1 1611 129 30 75 chr1 23789117 23789174 -258404490 + L1MB3 LINE L1 6115 6173 -10 1981 89 0 0 chr1 23789176 23789434 -258404230 - AluSx SINE Alu -18 294 37 2090 117 0 10 chr1 23789605 23789913 -258403751 + AluSg SINE Alu 1 305 -5 2064 123 0 10 chr1 23790057 23790357 -258403307 + AluSx SINE Alu 1 297 -15 687 270 5 37 chr1 23790573 23790762 -258402902 - MIR SINE MIR -63 199 17 392 364 28 0 chr1 23790771 23790914 -258402750 + MIR SINE MIR 108 254 -8 193 270 16 32 chr1 23790984 23791047 -258402617 - L3 LINE CR1 -72 1505 1444 706 251 4 70 chr1 23791463 23791577 -258402087 + MIR SINE MIR 51 144 -118 1412 183 28 17 chr1 23791577 23791867 -258401797 + AluJo SINE Alu 1 293 -19 706 251 4 70 chr1 23791867 23791979 -258401685 + MIR SINE MIR 144 262 0 2197 119 3 0 chr1 23792002 23792312 -258401352 - AluSx SINE Alu 0 312 2 23 0 0 0 chr1 23792317 23792340 -258401324 + AT_rich Low_complexity Low_complexity 1 23 0 863 128 0 16 chr1 23792422 23792547 -258401117 - FLAM_C SINE Alu -9 124 2 369 305 19 13 chr1 23792708 23792862 -258400802 - L1ME4a LINE L1 -239 5882 5728 270 315 56 28 chr1 23793162 23793270 -258400394 - L2 LINE L2 -11 3261 3151 285 175 70 0 chr1 23793762 23793819 -258399845 - MIR SINE MIR -68 194 134 379 226 24 0 chr1 23794926 23795010 -258398654 - MIR3 SINE MIR -54 154 69 515 178 158 0 chr1 23795012 23795113 -258398551 + AluJo SINE Alu 1 117 -185 27 0 0 0 chr1 23795114 23795141 -258398523 + AT_rich Low_complexity Low_complexity 1 27 0 443 257 42 35 chr1 23795304 23795448 -258398216 - MIR SINE MIR -105 157 13 358 133 13 53 chr1 23795493 23795568 -258398096 + L1MB2 LINE L1 5972 6043 -128 947 145 0 67 chr1 23795568 23795747 -258397917 + AluJo SINE Alu 122 288 -24 392 213 44 37 chr1 23796016 23796152 -258397512 + MIR SINE MIR 44 180 -82 253 315 107 51 chr1 23796244 23796422 -258397242 + MIR SINE MIR 20 207 -55 447 189 8 90 chr1 23796766 23796806 -258396858 + MIR SINE MIR 29 71 -191 1927 136 0 7 chr1 23796806 23797107 -258396557 + AluSx SINE Alu 1 299 -13 447 189 8 90 chr1 23797107 23797188 -258396476 + MIR SINE MIR 71 140 -122 1469 92 5 0 chr1 23797195 23797391 -258396273 + AluSq SINE Alu 1 197 -116 212 356 7 67 chr1 23797476 23797625 -258396039 + L2 LINE L2 3133 3272 0 424 208 0 104 chr1 23797954 23798023 -258395641 - L1ME2 LINE L1 -1 6163 6088 1995 139 3 0 chr1 23798023 23798325 -258395339 - AluSx SINE Alu -9 303 1 2154 109 6 10 chr1 23798329 23798642 -258395022 - AluSx SINE Alu 0 312 1 424 208 0 104 chr1 23798642 23798711 -258394953 - L1ME2 LINE L1 -79 6085 6035 192 77 0 0 chr1 23798731 23798757 -258394907 + (A)n Simple_repeat Simple_repeat 1 26 0 838 247 50 18 chr1 23798888 23799107 -258394557 - L1ME2 LINE L1 -242 5920 5695 300 317 137 0 chr1 23799182 23799343 -258394321 + MER91A DNA MER1_type 1 183 -13 1830 130 6 62 chr1 23799398 23799722 -258393942 + AluJb SINE Alu 1 306 -6 283 346 99 28 chr1 23799886 23800097 -258393567 + MIR SINE MIR 14 239 -23 402 259 68 34 chr1 23801332 23801479 -258392185 - MER103 DNA DNA -13 153 2 2210 94 3 0 chr1 23801863 23802161 -258391503 - AluSp SINE Alu -12 301 3 339 219 180 8 chr1 23802373 23802501 -258391163 - L2 LINE L2 -214 3058 2909 630 136 0 0 chr1 23803373 23803461 -258390203 - AluSg/x SINE Alu -22 288 201 1811 181 0 0 chr1 23803752 23804051 -258389613 + AluJo SINE Alu 1 299 -13 709 189 74 37 chr1 23804134 23804243 -258389421 - MER3 DNA MER1_type -8 201 81 2187 102 3 7 chr1 23804243 23804548 -258389116 + AluSx SINE Alu 1 304 -8 709 189 74 37 chr1 23804548 23804628 -258389036 - MER3 DNA MER1_type -128 81 5 227 293 13 27 chr1 23805079 23805154 -258388510 - MIR SINE MIR -82 180 107 259 319 28 42 chr1 23805487 23805552 -258388112 + MER5B DNA MER1_type 3 67 -111 2214 88 0 23 chr1 23805552 23805857 -258387807 + AluSx SINE Alu 1 298 -14 259 319 28 42 chr1 23805857 23805935 -258387729 + MER5B DNA MER1_type 67 144 -34 1738 165 3 3 chr1 23805939 23806242 -258387422 + AluJo SINE Alu 8 310 -2 1447 165 165 4 chr1 23806617 23806871 -258386793 + AluJb SINE Alu 1 295 -7 2073 126 0 0 chr1 23806889 23807183 -258386481 + AluSx SINE Alu 1 294 -18 1845 85 4 4 chr1 23807404 23807650 -258386014 + AluSp SINE Alu 2 247 -66 3579 155 29 60 chr1 23807678 23807845 -258385819 - Charlie1 DNA MER1_type -201 2560 2389 2062 95 0 40 chr1 23807845 23808149 -258385515 + AluSg1 SINE Alu 1 292 -17 3579 155 29 60 chr1 23808149 23808319 -258385345 - Charlie1 DNA MER1_type -372 2389 2215 1731 130 31 99 chr1 23808319 23808642 -258385022 - AluJb SINE Alu -1 301 1 3579 155 29 60 chr1 23808642 23809122 -258384542 - Charlie1 DNA MER1_type -546 2215 1767 1026 176 0 11 chr1 23809167 23809349 -258384315 + AluJo SINE Alu 121 300 -12 2233 68 3 3 chr1 23809395 23809688 -258383976 + AluY SINE Alu 6 298 -13 2030 131 7 10 chr1 23809714 23810020 -258383644 - AluSx SINE Alu 0 312 8 241 306 58 0 chr1 23810046 23810167 -258383497 - L1MC/D LINE L1 -1980 5828 5701 858 189 0 0 chr1 23810168 23810321 -258383343 + AluJb SINE Alu 138 290 -22 363 360 35 35 chr1 23810901 23811098 -258382566 + MIR SINE MIR 44 240 -22 1070 164 44 102 chr1 23811383 23811507 -258382157 + AluJo SINE Alu 1 103 -209 2003 113 7 0 chr1 23811507 23811809 -258381855 + AluSx SINE Alu 1 304 0 1070 164 44 102 chr1 23811809 23811958 -258381706 + AluJo SINE Alu 103 259 -53 370 371 24 6 chr1 23812038 23812208 -258381456 + MIR SINE MIR 19 191 -71 2010 128 10 13 chr1 23812536 23812848 -258380816 + AluSx SINE Alu 1 311 -1 296 274 227 13 chr1 23813624 23813785 -258379879 + MIR SINE MIR 11 197 -65 284 306 56 9 chr1 23813988 23814096 -258379568 - MIR SINE MIR -82 180 68 789 289 140 61 chr1 23814135 23814633 -258379031 - L2 LINE L2 -96 3217 2760 2023 116 0 77 chr1 23814633 23814767 -258378897 + AluSx SINE Alu 1 144 -168 2046 109 0 0 chr1 23814767 23815051 -258378613 + AluSg1 SINE Alu 1 284 -25 2023 116 0 77 chr1 23815051 23815253 -258378411 + AluSx SINE Alu 144 311 -1 1801 145 20 7 chr1 23815260 23815557 -258378107 + AluJb SINE Alu 3 303 -9 788 274 9 31 chr1 23815558 23815665 -258377999 + MER58A DNA MER1_type 4 112 -2308 2316 91 0 3 chr1 23815665 23815972 -258377692 - AluSx SINE Alu -6 306 1 788 274 9 31 chr1 23815972 23816090 -258377574 + MER58A DNA MER1_type 112 224 0 789 289 140 61 chr1 23816090 23816538 -258377126 - L2 LINE L2 -557 2756 2178 227 342 140 9 chr1 23816919 23817033 -258376631 + L3 LINE CR1 1438 1566 -11 1746 156 0 7 chr1 23817059 23817342 -258376322 + AluSx SINE Alu 1 281 -31 1904 138 3 7 chr1 23817722 23818018 -258375646 - AluSx SINE Alu -17 295 1 1748 171 3 13 chr1 23818018 23818317 -258375347 - AluJb SINE Alu -16 296 1 2231 92 0 13 chr1 23819640 23819945 -258373719 + AluSx SINE Alu 1 301 -11 2058 132 3 0 chr1 23821633 23821929 -258371735 + AluSx SINE Alu 1 297 -15 2227 109 0 0 chr1 23821929 23822231 -258371433 + AluSx SINE Alu 1 303 -9 341 240 149 8 chr1 23822261 23822382 -258371282 + L2 LINE L2 2924 3061 -211 1584 140 198 12 chr1 23822423 23822751 -258370913 - MLT1C LTR MaLR 0 467 79 1940 102 0 4 chr1 23822751 23823017 -258370647 - AluSp SINE Alu -7 306 42 322 309 9 109 chr1 23823331 23823427 -258370237 + L1M4 LINE L1 4404 4508 -1638 2404 70 0 0 chr1 23823427 23823726 -258369938 + AluY SINE Alu 1 299 -12 322 309 9 109 chr1 23823726 23823796 -258369868 + L1M4 LINE L1 4508 4547 -1599 1774 109 4 43 chr1 23823796 23824072 -258369592 + AluSq SINE Alu 2 266 -47 322 309 9 109 chr1 23824072 23824114 -258369550 + L1M4 LINE L1 4547 4592 -1554 342 284 54 50 chr1 23824134 23824261 -258369403 + L1M4 LINE L1 4552 4677 -1469 2173 78 54 0 chr1 23824261 23824556 -258369108 + AluY SINE Alu 1 311 0 342 284 54 50 chr1 23824556 23824706 -258368958 + L1M4 LINE L1 4677 4830 -1316 1849 130 11 3 chr1 23824751 23825035 -258368629 + AluJo SINE Alu 7 292 -20 1664 153 33 4 chr1 23825074 23825348 -258368316 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr1 23825349 23825376 -258368288 + (CAAT)n Simple_repeat Simple_repeat 3 29 0 2795 162 58 7 chr1 23825453 23825649 -258368015 - ERVL LTR ERVL -40 5724 5539 1949 134 3 7 chr1 23825649 23825956 -258367708 - AluJb SINE Alu -6 306 1 2795 162 58 7 chr1 23825956 23826307 -258367357 - ERVL LTR ERVL -225 5539 5149 2005 131 23 148 chr1 23826309 23826351 -258367313 - MER47B DNA MER2_type -1907 416 370 1662 151 95 7 chr1 23826351 23826637 -258367027 - AluJb SINE Alu -3 309 1 2005 131 23 148 chr1 23826637 23827068 -258366596 - MER47B DNA MER2_type -1953 370 2 1829 185 15 51 chr1 23827068 23827397 -258366267 - ERVL LTR ERVL -616 5148 4834 2288 105 0 0 chr1 23827397 23827692 -258365972 + AluSc SINE Alu 1 295 -14 1829 185 15 51 chr1 23827692 23827751 -258365913 - ERVL LTR ERVL -930 4834 4774 725 58 0 0 chr1 23827755 23827842 -258365822 - AluY SINE Alu -222 88 2 1540 118 14 0 chr1 23827901 23828113 -258365551 + AluSg/x SINE Alu 85 299 -13 1477 163 12 0 chr1 23828113 23828353 -258365311 - ERVL LTR ERVL -2436 3328 3086 216 0 0 0 chr1 23828375 23828399 -258365265 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1844 171 26 80 chr1 23828402 23828572 -258365092 - ERVL LTR ERVL -2663 3101 2924 1767 104 0 32 chr1 23828572 23828823 -258364841 + AluSx SINE Alu 64 306 -6 1844 171 26 80 chr1 23828823 23829067 -258364597 - ERVL LTR ERVL -2840 2924 2709 516 185 0 0 chr1 23829067 23829148 -258364516 + AluJ/FLAM SINE Alu 1 81 -231 2194 106 3 11 chr1 23829219 23829502 -258364162 + AluSx SINE Alu 1 281 -31 * 2357 90 3 10 chr1 23829501 23829801 -258363863 - AluY SINE Alu -13 298 1 5377 177 38 0 chr1 23829831 23830807 -258362857 - ERVL LTR ERVL -3072 2692 1680 731 144 0 68 chr1 23830811 23830957 -258362707 + AluJo SINE Alu 7 142 -170 2290 105 27 0 chr1 23830957 23831253 -258362411 + AluSp SINE Alu 1 304 -9 2199 94 4 0 chr1 23831258 23831534 -258362130 + AluSp SINE Alu 1 277 -36 255 273 45 0 chr1 23831537 23831625 -258362039 - L1MC4 LINE L1 -1337 6705 6614 807 89 0 0 chr1 23831651 23831752 -258361912 - AluY SINE Alu -210 101 1 1841 123 61 23 chr1 23831775 23832085 -258361579 - ERVL LTR ERVL -3065 2699 2378 684 115 58 0 chr1 23832085 23832189 -258361475 + AluJb SINE Alu 192 301 -11 1705 274 34 41 chr1 23832190 23832436 -258361228 - ERVL LTR ERVL -4076 1688 1442 2440 92 0 16 chr1 23832436 23832751 -258360913 - AluSx SINE Alu -2 310 1 1705 274 34 41 chr1 23832751 23833013 -258360651 - ERVL LTR ERVL -4322 1442 1180 225 0 0 0 chr1 23833013 23833038 -258360626 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 2271 116 3 0 chr1 23833048 23833350 -258360314 - AluSq SINE Alu -10 303 1 1705 274 34 41 chr1 23833350 23833416 -258360248 - ERVL LTR ERVL -4593 1171 1106 1085 196 27 9 chr1 23833423 23833643 -258360021 - MER58B DNA MER1_type -4 337 114 2260 113 3 3 chr1 23833643 23833944 -258359720 + AluSx SINE Alu 1 301 -11 1734 175 7 0 chr1 23833988 23834293 -258359371 - AluJb SINE Alu 0 307 1 1373 120 27 68 chr1 23834293 23834330 -258359334 - L1MA8 LINE L1 -21 6270 6233 2318 84 3 23 chr1 23834330 23834660 -258359004 - AluSq SINE Alu 0 313 1 1373 120 27 68 chr1 23834660 23834914 -258358750 - L1MA8 LINE L1 -58 6233 5991 312 220 37 101 chr1 23834924 23834951 -258358713 - L1MCc LINE L1 -4480 2642 2615 1243 181 148 22 chr1 23834951 23835221 -258358443 - AluJo SINE Alu -8 304 1 312 220 37 101 chr1 23835221 23835276 -258358388 - L1MCc LINE L1 -4507 2615 2566 1745 115 142 0 chr1 23835276 23835537 -258358127 - AluSx SINE Alu -14 298 1 312 220 37 101 chr1 23835537 23835562 -258358102 - L1MCc LINE L1 -4556 2566 2541 1838 160 0 39 chr1 23835562 23835706 -258357958 + AluJb SINE Alu 1 128 -184 2303 108 0 0 chr1 23835706 23836002 -258357662 + AluSx SINE Alu 1 296 -16 1838 160 0 39 chr1 23836002 23836164 -258357500 + AluJb SINE Alu 128 295 -17 180 0 0 0 chr1 23836164 23836184 -258357480 + (TA)n Simple_repeat Simple_repeat 2 21 0 1046 179 0 0 chr1 23836188 23836356 -258357308 + FRAM SINE Alu 6 173 -3 651 201 40 121 chr1 23836365 23836663 -258357001 - L1MD2 LINE L1 0 6359 6086 * 1218 228 53 96 chr1 23836661 23836837 -258356827 - L1MCc LINE L1 -4765 2176 1994 1950 184 19 101 chr1 23836837 23837148 -258356516 + MLT2B1 LTR ERVL 1 247 -273 2221 93 35 0 chr1 23837148 23837438 -258356226 + AluSp SINE Alu 1 300 -13 1950 184 19 101 chr1 23837438 23837692 -258355972 + MLT2B1 LTR ERVL 247 520 0 1218 228 53 96 chr1 23837692 23837744 -258355920 - L1MCc LINE L1 -4947 1994 1941 1694 181 10 3 chr1 23837744 23838042 -258355622 - AluJb SINE Alu -11 301 2 1218 228 53 96 chr1 23838042 23838329 -258355335 - L1MCc LINE L1 -5000 1941 1707 2395 94 3 3 chr1 23838329 23838637 -258355027 - AluSg SINE Alu -2 308 1 1218 228 53 96 chr1 23838637 23838956 -258354708 - L1MCc LINE L1 -5234 1707 1376 910 222 0 0 chr1 23838961 23839149 -258354515 - AluJb SINE Alu 0 309 122 1135 256 93 72 chr1 23839154 23839811 -258353853 - L1MCc LINE L1 -5060 1363 693 391 250 48 0 chr1 23840389 23840473 -258353191 - L2 LINE L2 0 3313 3226 735 169 54 0 chr1 23840502 23840632 -258353032 + AluJo SINE Alu 2 138 -174 2388 82 0 7 chr1 23840717 23841010 -258352654 + AluSc SINE Alu 1 291 -18 1612 207 3 13 chr1 23841018 23841322 -258352342 + AluJb SINE Alu 2 302 -10 2404 97 0 3 chr1 23841331 23841641 -258352023 + AluSg1 SINE Alu 1 309 0 625 273 132 16 chr1 23841660 23842037 -258351627 - L2 LINE L2 -238 3034 2623 1918 108 12 89 chr1 23842094 23842446 -258351218 - AluSq SINE Alu 0 313 1 2097 125 14 0 chr1 23842452 23842764 -258350900 - AluSx SINE Alu 0 316 1 1712 143 73 4 chr1 23842774 23843047 -258350617 - AluJb SINE Alu -20 292 1 318 255 110 48 chr1 23843346 23843491 -258350173 + MIR3 SINE MIR 8 146 -62 526 323 42 12 chr1 23843517 23843615 -258350049 + MIR SINE MIR 11 105 -157 2110 138 7 3 chr1 23843615 23843920 -258349744 - AluJb SINE Alu -6 306 1 526 323 42 12 chr1 23843920 23844063 -258349601 + MIR SINE MIR 105 259 -3 277 338 9 11 chr1 23844113 23844214 -258349450 + MIR SINE MIR 42 148 -60 2694 93 41 5 chr1 23844217 23844245 -258349419 + L1PB1 LINE L1 5749 5775 -376 464 0 18 0 chr1 23844245 23844301 -258349363 + (CA)n Simple_repeat Simple_repeat 2 58 0 2694 93 41 5 chr1 23844301 23844660 -258349004 + L1PB1 LINE L1 5775 6150 -1 2424 95 0 0 chr1 23844688 23844994 -258348670 + AluSc SINE Alu 1 306 -3 216 143 0 82 chr1 23844996 23845045 -258348619 + MIR3 SINE MIR 148 192 -16 183 200 44 0 chr1 23845103 23845148 -258348516 - L2 LINE L2 -3 3310 3264 544 311 131 10 chr1 23845869 23846075 -258347589 - MIR SINE MIR -21 241 11 640 208 98 122 chr1 23846293 23846353 -258347311 - MIR SINE MIR -14 248 188 2586 77 0 0 chr1 23846353 23846664 -258347000 + AluY SINE Alu 1 311 0 640 208 98 122 chr1 23846664 23846726 -258346938 - MIR SINE MIR -74 188 126 2705 36 0 7 chr1 23846726 23847034 -258346630 + AluY SINE Alu 1 306 -5 640 208 98 122 chr1 23847034 23847046 -258346618 - MIR SINE MIR -136 126 115 2243 139 0 3 chr1 23847046 23847355 -258346309 + AluJb SINE Alu 1 308 -4 640 208 98 122 chr1 23847355 23847463 -258346201 - MIR SINE MIR -147 115 10 366 258 54 0 chr1 23847476 23847643 -258346021 + (TTAGGG)n Simple_repeat Simple_repeat 2 177 0 1494 113 288 22 chr1 23847713 23848032 -258345632 - MER4A LTR ERV1 0 664 261 571 152 0 10 chr1 23848032 23848131 -258345533 - MER4A LTR ERV1 -566 98 1 204 97 0 0 chr1 23848154 23848185 -258345479 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 305 107 89 0 chr1 23848205 23848261 -258345403 - Alu SINE Alu -1 299 239 251 313 207 9 chr1 23848270 23848448 -258345216 - MIR SINE MIR -12 250 34 399 339 71 6 chr1 23848714 23848882 -258344782 - L2 LINE L2 -3 3269 3091 227 210 0 81 chr1 23849100 23849162 -258344502 - MIR SINE MIR -3 259 203 2264 105 3 10 chr1 23849296 23849601 -258344063 - AluSx SINE Alu -9 303 1 207 310 41 81 chr1 23849601 23849798 -258343866 - L2 LINE L2 -249 3023 2835 386 225 12 0 chr1 23850632 23850712 -258342952 + MIR SINE MIR 182 262 0 1739 164 52 17 chr1 23850812 23851099 -258342565 - AluJb SINE Alu -15 297 1 237 154 246 15 chr1 23851110 23851175 -258342489 - MIR SINE MIR -122 140 61 2660 122 51 89 chr1 23851175 23851243 -258342421 + L1M3 LINE L1 5272 5341 -842 2312 101 10 7 chr1 23851243 23851551 -258342113 + AluSq SINE Alu 1 309 -4 2660 122 51 89 chr1 23851551 23851670 -258341994 + L1M3 LINE L1 5341 5463 -720 2257 87 31 0 chr1 23851670 23851958 -258341706 - AluSp SINE Alu -16 297 1 2660 122 51 89 chr1 23851958 23851993 -258341671 + L1M3 LINE L1 5463 5498 -685 2386 99 0 0 chr1 23851993 23852296 -258341368 + AluSq SINE Alu 11 313 0 2660 122 51 89 chr1 23852296 23852644 -258341020 + L1M3 LINE L1 5498 5822 -361 212 0 0 35 chr1 23852654 23852683 -258340981 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1323 126 0 0 chr1 23852683 23852891 -258340773 + AluSq SINE Alu 122 313 0 809 210 14 0 chr1 23852891 23853034 -258340630 - FRAM SINE Alu -30 146 2 1445 170 79 25 chr1 23853041 23853318 -258340346 - AluJo SINE Alu -12 300 9 2177 130 0 3 chr1 23853340 23853647 -258340017 - AluJb SINE Alu -4 308 3 200 337 129 45 chr1 23854115 23854293 -258339371 - MIR SINE MIR -15 247 55 1011 214 0 0 chr1 23854513 23854686 -258338978 - FRAM SINE Alu -6 170 1 198 118 0 0 chr1 23854686 23854720 -258338944 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1717 185 0 7 chr1 23854720 23855006 -258338658 - AluJo SINE Alu -28 284 1 345 257 0 0 chr1 23855019 23855128 -258338536 + CT-rich Low_complexity Low_complexity 4 112 0 2305 90 0 23 chr1 23855129 23855428 -258338236 - AluSc SINE Alu -17 292 1 207 0 0 0 chr1 23855678 23855701 -258337963 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2432 93 3 3 chr1 23856262 23856574 -258337090 + AluSp SINE Alu 1 312 -1 680 278 32 87 chr1 23856607 23856691 -258336973 - MIR SINE MIR -3 259 172 2138 119 3 0 chr1 23856691 23856976 -258336688 - AluSg SINE Alu -24 286 1 680 278 32 87 chr1 23856976 23857143 -258336521 - MIR SINE MIR -90 172 22 441 276 97 62 chr1 23857178 23857435 -258336229 - L2 LINE L2 -177 3095 2830 210 300 140 10 chr1 23857575 23857675 -258335989 + MIR SINE MIR 27 139 -123 1782 139 42 17 chr1 23857675 23857963 -258335701 + AluJb SINE Alu 1 295 -17 2055 122 10 7 chr1 23857965 23858259 -258335405 + AluSx SINE Alu 1 295 -17 529 48 123 0 chr1 23858261 23858665 -258334999 + (TA)n Simple_repeat Simple_repeat 1 453 0 263 15 92 15 chr1 23858680 23858726 -258334938 + (TA)n Simple_repeat Simple_repeat 2 56 -15 201 39 0 0 chr1 23858726 23858752 -258334912 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 263 15 92 15 chr1 23858752 23858770 -258334894 + (TA)n Simple_repeat Simple_repeat 56 71 0 2359 79 6 32 chr1 23859251 23859567 -258334097 + AluY SINE Alu 1 308 -3 2380 83 3 0 chr1 23859828 23860130 -258333534 + AluSp SINE Alu 1 303 -10 384 228 106 24 chr1 23860136 23860259 -258333405 + MIR3 SINE MIR 3 135 -73 342 252 174 0 chr1 23860276 23860391 -258333273 + MIR SINE MIR 101 235 -27 2222 86 31 7 chr1 23860424 23860715 -258332949 - AluSx SINE Alu -14 298 1 192 309 15 0 chr1 23861037 23861105 -258332559 + MIR SINE MIR 53 121 -141 366 42 0 0 chr1 23861919 23861967 -258331697 + (CGG)n Simple_repeat Simple_repeat 1 48 0 320 239 45 8 chr1 23861977 23862111 -258331553 + C-rich Low_complexity Low_complexity 4 142 0 183 80 0 0 chr1 23862210 23862235 -258331429 + (CGG)n Simple_repeat Simple_repeat 3 27 0 423 56 0 0 chr1 23862250 23862304 -258331360 + (CGG)n Simple_repeat Simple_repeat 1 54 0 1987 116 17 23 chr1 23864825 23865127 -258328537 - AluSx SINE Alu -12 300 1 1431 133 0 0 chr1 23865133 23865329 -258328335 + AluSg/x SINE Alu 100 295 -17 2377 98 3 3 chr1 23865365 23865672 -258327992 - AluSc SINE Alu -2 307 1 2176 62 8 0 chr1 23865704 23865986 -258327678 + AluY SINE Alu 22 305 0 275 310 167 43 chr1 23866043 23866301 -258327363 - L2 LINE L2 0 3272 2983 2302 81 3 0 chr1 23868080 23868396 -258325268 - AluSx SINE Alu 0 317 1 6605 129 60 12 chr1 23868397 23868986 -258324678 - MER41-int LTR ERV1 -2603 3343 2784 2334 92 7 0 chr1 23868986 23869292 -258324372 - AluY SINE Alu -3 308 1 6605 129 60 12 chr1 23869292 23869331 -258324333 - MER41-int LTR ERV1 -3162 2784 2748 2252 125 0 19 chr1 23869331 23869644 -258324020 - AluSx SINE Alu -5 307 1 6605 129 60 12 chr1 23869644 23870154 -258323510 - MER41-int LTR ERV1 -3198 2748 2149 2214 114 0 10 chr1 23870155 23870462 -258323202 + AluSg SINE Alu 1 304 -6 273 97 129 0 chr1 23870609 23870671 -258322993 - L1M4 LINE L1 -697 5487 5418 1988 143 8 45 chr1 23870724 23870831 -258322833 - L1M4 LINE L1 -743 5403 5294 2023 127 53 0 chr1 23870831 23871115 -258322549 - AluJb SINE Alu -13 299 1 1988 143 8 45 chr1 23871115 23871460 -258322204 - L1M4 LINE L1 -852 5294 4985 880 218 0 29 chr1 23871460 23871634 -258322030 - AluJb SINE Alu -19 293 125 2205 196 50 76 chr1 23871634 23871901 -258321763 - L1M4 LINE L1 -1171 4975 4703 2305 99 0 0 chr1 23871901 23872203 -258321461 + AluSc SINE Alu 1 302 -7 2205 196 50 76 chr1 23872203 23872421 -258321243 - L1M4 LINE L1 -1443 4703 4509 1560 174 18 18 chr1 23872421 23872703 -258320961 + AluJb SINE Alu 1 282 -30 2205 196 50 76 chr1 23872703 23872890 -258320774 - L1M4 LINE L1 -1637 4509 4319 2096 143 7 0 chr1 23872890 23873198 -258320466 + AluSp SINE Alu 1 310 -3 189 0 0 0 chr1 23873198 23873219 -258320445 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 310 137 20 0 chr1 24074686 24074737 -258118927 - Alu SINE Alu -250 52 1 730 86 0 31 chr1 24074738 24074866 -258118798 - Tigger4(Zombi) DNA MER2_type -2019 712 589 1262 92 0 71 chr1 24074866 24075062 -258118602 - AluSq SINE Alu -3 310 129 2427 97 0 3 chr1 24075070 24075381 -258118283 - AluSx SINE Alu -2 310 1 810 126 30 0 chr1 24075381 24075516 -258118148 - Tigger4(Zombi) DNA MER2_type -2134 597 459 2235 66 7 4 chr1 24075516 24075789 -258117875 - AluSx SINE Alu -4 308 35 197 282 118 12 chr1 24075942 24076027 -258117637 + L2 LINE L2 3141 3234 -38 244 206 16 32 chr1 24076295 24076358 -258117306 - MER5A DNA MER1_type 0 189 128 1751 157 65 7 chr1 24076389 24076715 -258116949 - AluJo SINE Alu 0 343 1 199 202 45 0 chr1 24076715 24076783 -258116881 - MER5A DNA MER1_type -114 75 4 1540 116 0 5 chr1 24077307 24077522 -258116142 - AluSg/x SINE Alu -11 301 88 186 150 0 50 chr1 24077535 24077575 -258116089 - MER5A DNA MER1_type -109 80 43 495 136 34 0 chr1 24077683 24077771 -258115893 + Alu SINE Alu 208 298 -13 304 293 10 20 chr1 24077792 24077891 -258115773 - MIR SINE MIR -131 131 34 231 346 120 0 chr1 24078559 24078692 -258114972 + MIR SINE MIR 112 260 -2 276 283 88 44 chr1 24078774 24078887 -258114777 - MIR3 SINE MIR -37 171 54 2024 101 8 4 chr1 24078922 24079190 -258114474 - AluSx SINE Alu 0 312 44 1259 92 0 6 chr1 24079290 24079453 -258114211 - AluSq SINE Alu -151 162 1 2360 201 53 76 chr1 24079457 24080142 -258113522 - L1MEc LINE L1 -5721 675 7 2461 78 3 0 chr1 24080165 24080461 -258113203 + AluSp SINE Alu 1 297 -16 2058 169 3 3 chr1 24080464 24080818 -258112846 - MLT1A1 LTR MaLR 0 365 12 3182 193 26 81 chr1 24081270 24081370 -258112294 - L1MD2 LINE L1 -10 6349 6245 2278 116 0 0 chr1 24081370 24081663 -258112001 - AluSx SINE Alu -9 303 11 3182 193 26 81 chr1 24081663 24082255 -258111409 - L1MD2 LINE L1 -114 6245 5622 2436 64 3 0 chr1 24082255 24082552 -258111112 + AluY SINE Alu 1 298 -13 3182 193 26 81 chr1 24082552 24082668 -258110996 - L1MD2 LINE L1 -737 5622 5501 2163 117 0 3 chr1 24082668 24082959 -258110705 + AluSg SINE Alu 1 290 -20 3182 193 26 81 chr1 24082959 24083000 -258110664 - L1MD2 LINE L1 -858 5501 5543 651 64 27 0 chr1 24083000 24083110 -258110554 + (TA)n Simple_repeat Simple_repeat 1 113 0 1647 119 8 25 chr1 24083201 24083444 -258110220 + AluSq SINE Alu 1 239 -74 256 298 184 7 chr1 24083926 24084067 -258109597 + MIR SINE MIR 20 185 -77 202 369 137 6 chr1 24084304 24084472 -258109192 - MIR SINE MIR -14 248 59 * 225 285 135 36 chr1 24084441 24084527 -258109137 - L2 LINE L2 -453 2861 2785 738 182 0 8 chr1 24084527 24084659 -258109005 - FLAM_C SINE Alu -1 132 2 225 285 135 36 chr1 24084659 24084765 -258108899 - L2 LINE L2 -529 2785 2650 591 250 12 48 chr1 24084944 24085112 -258108552 + MIR SINE MIR 86 247 -15 298 294 59 29 chr1 24085576 24085678 -258107986 + L2 LINE L2 3208 3312 -1 225 65 0 0 chr1 24085741 24085772 -258107892 + (CAGA)n Simple_repeat Simple_repeat 1 31 0 422 294 27 14 chr1 24085776 24085922 -258107742 + MIR SINE MIR 82 229 -33 477 346 80 5 chr1 24086027 24086215 -258107449 + MIR SINE MIR 28 229 -33 499 293 28 11 chr1 24086283 24086464 -258107200 + MIR3 SINE MIR 10 193 -15 2603 60 0 0 chr1 24086945 24087247 -258106417 - AluY SINE Alu -9 302 1 225 0 0 0 chr1 24087407 24087432 -258106232 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 329 237 41 41 chr1 24087434 24087531 -258106133 - L2 LINE L2 -10 3303 3207 408 131 0 38 chr1 24087538 24087617 -258106047 + MSTB LTR MaLR 355 424 -2 826 144 8 0 chr1 24087619 24087751 -258105913 + FLAM_C SINE Alu 1 133 0 2227 103 0 56 chr1 24088083 24088404 -258105260 - AluSx SINE Alu -9 303 1 315 231 77 46 chr1 24088405 24088535 -258105129 + MIR SINE MIR 72 205 -57 2588 70 0 3 chr1 24088841 24089153 -258104511 - AluY SINE Alu 0 311 1 2030 129 14 0 chr1 24089158 24089445 -258104219 - AluSg SINE Alu -19 291 1 405 262 99 35 chr1 24089696 24089755 -258103909 + MIR SINE MIR 20 74 -188 1968 148 37 7 chr1 24089755 24090053 -258103611 + AluJb SINE Alu 1 307 -5 2142 139 3 0 chr1 24090054 24090355 -258103309 + AluSx SINE Alu 1 302 -10 2208 122 0 16 chr1 24090364 24090668 -258102996 + AluSx SINE Alu 1 299 -13 405 262 99 35 chr1 24090668 24090768 -258102896 + MIR SINE MIR 81 202 -60 262 132 226 0 chr1 24090946 24090999 -258102665 - L1MC4 LINE L1 -25 8017 7953 694 257 0 0 chr1 24091036 24091180 -258102484 - FRAM SINE Alu -37 139 1 1413 156 73 49 chr1 24091201 24091528 -258102136 - LTR47A LTR ERVL 0 452 118 619 96 133 59 chr1 24091499 24091634 -258102030 - LTR47A LTR ERVL -257 195 51 * 696 120 137 0 chr1 24091634 24091751 -258101913 + FLAM_C SINE Alu 1 133 -10 340 164 0 0 chr1 24091751 24091806 -258101858 - LTR47A LTR ERVL -397 55 1 1027 205 121 10 chr1 24091806 24092103 -258101561 - L1MC4 LINE L1 -100 7942 7613 2470 96 3 3 chr1 24092108 24092421 -258101243 - AluSq SINE Alu 0 313 1 234 0 0 0 chr1 24093065 24093091 -258100573 + (A)n Simple_repeat Simple_repeat 1 26 0 2354 56 45 0 chr1 24093093 24093380 -258100284 + AluY SINE Alu 3 302 -9 1166 171 8 16 chr1 24093385 24093636 -258100028 + L1MEc LINE L1 674 922 -5474 249 139 0 0 chr1 24093661 24093704 -258099960 + (A)n Simple_repeat Simple_repeat 1 43 0 719 172 0 0 chr1 24093813 24093929 -258099735 - FLAM_C SINE Alu -26 117 2 1046 280 21 8 chr1 24093932 24094307 -258099357 + L1MEc LINE L1 997 1376 -5020 2434 97 0 0 chr1 24094543 24094842 -258098822 + AluSx SINE Alu 1 299 -13 1274 152 9 31 chr1 24094842 24095066 -258098598 + AluJo SINE Alu 85 303 -9 663 250 105 14 chr1 24095773 24096017 -258097647 - MIR SINE MIR -1 261 1 2179 121 0 0 chr1 24096413 24096723 -258096941 + AluSx SINE Alu 1 310 0 2440 88 0 0 chr1 24096939 24097233 -258096431 + AluSq SINE Alu 1 294 -19 529 229 62 109 chr1 24097291 24097416 -258096248 + MIR SINE MIR 57 170 -92 504 179 145 8 chr1 24097416 24097533 -258096131 - FLAM_A SINE Alu 0 133 1 529 229 62 109 chr1 24097533 24097617 -258096047 + MIR SINE MIR 170 256 -6 292 230 259 0 chr1 24097741 24097876 -258095788 + L1MC4a LINE L1 5771 5940 -1868 2253 95 0 3 chr1 24097885 24098168 -258095496 + AluSx SINE Alu 12 293 -19 369 275 129 6 chr1 24098759 24098930 -258094734 + L2 LINE L2 3075 3266 -6 282 367 18 9 chr1 24099065 24099174 -258094490 + MIR SINE MIR 12 121 -141 224 366 91 23 chr1 24099158 24099333 -258094331 + L2 LINE L2 2915 3101 -171 * 399 264 109 0 chr1 24099421 24099531 -258094133 - L2 LINE L2 -1 3312 3191 1495 98 94 18 chr1 24099683 24099810 -258093854 - AluSx SINE Alu -63 249 133 225 0 0 0 chr1 24099810 24099835 -258093829 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1495 98 94 18 chr1 24099835 24099931 -258093733 - AluSx SINE Alu -179 133 9 1674 66 24 5 chr1 24100085 24100298 -258093366 - AluY SINE Alu -8 303 87 2523 92 19 5 chr1 24100408 24100778 -258092886 - THE1C LTR MaLR 0 375 1 242 114 0 0 chr1 24100968 24101003 -258092661 + U2 snRNA snRNA 1 35 -153 359 293 203 16 chr1 24102026 24102272 -258091392 + L2 LINE L2 3008 3299 -14 718 174 0 54 chr1 24102361 24102510 -258091154 - FLAM_C SINE Alu 0 143 3 1500 173 96 7 chr1 24102646 24102796 -258090868 - AluJb SINE Alu -17 295 160 821 19 0 19 chr1 24102796 24102900 -258090764 + (TTTC)n Simple_repeat Simple_repeat 3 104 0 1500 173 96 7 chr1 24102900 24103020 -258090644 - AluJb SINE Alu -152 160 1 281 223 262 0 chr1 24103063 24103166 -258090498 + MIR SINE MIR 85 214 -48 561 190 190 22 chr1 24103909 24104088 -258089576 + MER3 DNA MER1_type 1 209 0 2382 99 20 11 chr1 24104804 24105157 -258088507 + THE1C LTR MaLR 3 358 -17 2315 97 7 0 chr1 24105252 24105541 -258088123 - AluSg SINE Alu -19 291 1 22 0 0 0 chr1 24105643 24105665 -258087999 + AT_rich Low_complexity Low_complexity 1 22 0 1723 186 0 30 chr1 24105665 24105961 -258087703 - AluJb SINE Alu -24 288 2 654 142 30 0 chr1 24106017 24106047 -258087617 + CT-rich Low_complexity Low_complexity 1 29 -109 2554 63 0 19 chr1 24106047 24106363 -258087301 - AluY SINE Alu -1 310 1 654 142 30 0 chr1 24106363 24106466 -258087198 + CT-rich Low_complexity Low_complexity 29 138 0 2091 144 0 16 chr1 24106466 24106779 -258086885 - AluSx SINE Alu -4 308 1 391 294 0 0 chr1 24106889 24106991 -258086673 - MIR SINE MIR 0 262 161 1069 142 5 63 chr1 24106995 24107183 -258086481 - AluSg/x SINE Alu 0 310 133 1427 166 46 89 chr1 24107183 24107392 -258086272 - AluJb SINE Alu -1 311 119 423 0 0 0 chr1 24107392 24107439 -258086225 + (TG)n Simple_repeat Simple_repeat 2 48 0 1427 166 46 89 chr1 24107439 24107554 -258086110 - AluJb SINE Alu -193 119 1 1069 142 5 63 chr1 24107554 24107570 -258086094 - AluSg/x SINE Alu -177 133 118 504 274 89 0 chr1 24107613 24107748 -258085916 - MIR SINE MIR -110 152 6 206 265 29 15 chr1 24107965 24108033 -258085631 - MIR SINE MIR -102 106 38 1398 173 113 13 chr1 24108083 24108383 -258085281 + Charlie1b DNA MER1_type 2 331 -192 2175 95 43 13 chr1 24108386 24108521 -258085143 + AluSp SINE Alu 1 131 -182 2468 54 6 50 chr1 24108521 24108838 -258084826 + AluY SINE Alu 1 303 -8 2175 95 43 13 chr1 24108838 24109006 -258084658 + AluSp SINE Alu 131 313 0 401 304 108 13 chr1 24109361 24109519 -258084145 + MIR SINE MIR 20 192 -70 217 303 0 57 chr1 24109954 24110076 -258083588 + C-rich Low_complexity Low_complexity 6 120 0 221 309 0 0 chr1 24110123 24110178 -258083486 + MIR SINE MIR 91 145 -117 2381 106 3 0 chr1 24110179 24110482 -258083182 + AluSx SINE Alu 1 304 -8 395 241 26 52 chr1 24110486 24110602 -258083062 - MER3 DNA MER1_type -85 124 12 789 127 8 15 chr1 24110612 24110746 -258082918 - FLAM_A SINE Alu 0 133 1 410 283 49 44 chr1 24110811 24110993 -258082671 + MIR3 SINE MIR 23 205 -3 180 0 0 0 chr1 24111605 24111625 -258082039 + (CA)n Simple_repeat Simple_repeat 2 21 0 596 304 34 10 chr1 24111684 24111891 -258081773 - MIR SINE MIR -5 257 46 2231 91 10 10 chr1 24112314 24112611 -258081053 + AluSx SINE Alu 1 297 -15 1281 133 121 64 chr1 24112647 24112779 -258080885 + AluJo SINE Alu 11 134 -178 2187 117 24 0 chr1 24112779 24113070 -258080594 + AluSp SINE Alu 1 298 -15 1615 104 135 56 chr1 24113072 24113210 -258080454 + AluSx SINE Alu 1 127 -185 2205 108 0 0 chr1 24113210 24113498 -258080166 + AluY SINE Alu 1 288 -23 1615 104 135 56 chr1 24113498 24113647 -258080017 + AluSx SINE Alu 127 311 -1 1281 133 121 64 chr1 24113647 24113760 -258079904 + AluJo SINE Alu 134 273 -39 511 269 39 85 chr1 24113782 24113891 -258079773 + L1ME LINE L1 5414 5526 -595 2570 62 0 3 chr1 24113891 24114195 -258079469 + AluY SINE Alu 2 304 -7 511 269 39 85 chr1 24114195 24114345 -258079319 + L1ME LINE L1 5526 5661 -460 2346 115 0 0 chr1 24114530 24114843 -258078821 - AluSq SINE Alu 0 313 1 27 29 0 0 chr1 24114851 24114885 -258078779 + AT_rich Low_complexity Low_complexity 1 34 0 466 275 51 0 chr1 24115286 24115424 -258078240 - MIR SINE MIR -111 151 7 488 306 12 12 chr1 24115676 24115836 -258077828 - MIR SINE MIR -72 190 31 240 94 57 38 chr1 24115931 24115984 -258077680 - MIR SINE MIR -101 161 108 639 291 33 14 chr1 24116015 24116225 -258077439 + MIR SINE MIR 49 262 0 222 306 107 16 chr1 24116704 24116825 -258076839 - MIR SINE MIR -119 143 12 251 307 13 0 chr1 24116903 24116978 -258076686 + L2 LINE L2 3238 3313 0 216 331 97 62 chr1 24117227 24117517 -258076147 - L2 LINE L2 -55 3217 2918 1584 183 15 80 chr1 24117626 24118026 -258075638 - MLT1A2 LTR MaLR 0 374 1 722 181 70 47 chr1 24118321 24118492 -258075172 + MER45A DNA AcHobo 1 175 -3 346 255 21 71 chr1 24118779 24118920 -258074744 + MER94 DNA DNA 1 134 0 2378 105 0 3 chr1 24119012 24119325 -258074339 - AluSx SINE Alu 0 312 1 2098 130 14 0 chr1 24119325 24119617 -258074047 - AluSx SINE Alu -14 298 3 481 183 58 10 chr1 24119717 24119821 -258073843 + MLT1C LTR MaLR 359 467 0 667 265 48 0 chr1 24119868 24120057 -258073607 + L1ME3A LINE L1 5973 6170 0 2209 127 3 10 chr1 24120070 24120384 -258073280 + AluSx SINE Alu 1 312 0 1132 161 60 14 chr1 24120467 24120685 -258072979 - MLT1A2 LTR MaLR -2 372 145 232 211 77 0 chr1 24120771 24120823 -258072841 - MIR SINE MIR -93 169 114 204 89 22 111 chr1 24121563 24121608 -258072056 + MER91B DNA MER1_type 24 64 -126 287 282 19 48 chr1 24122198 24122301 -258071363 - L2 LINE L2 -217 3055 2956 363 296 59 32 chr1 24122544 24122730 -258070934 + MIR SINE MIR 35 225 -37 292 309 7 47 chr1 24123242 24123391 -258070273 + MIR SINE MIR 50 192 -70 2326 94 17 0 chr1 24123592 24123891 -258069773 + AluSg SINE Alu 1 304 -6 2340 68 4 0 chr1 24123891 24124170 -258069494 + AluY SINE Alu 1 281 -30 192 40 0 0 chr1 24124171 24124196 -258069468 + (TA)n Simple_repeat Simple_repeat 2 26 0 368 115 33 0 chr1 24124200 24124261 -258069403 + MIR SINE MIR 73 135 -127 382 247 0 0 chr1 24124542 24124639 -258069025 - L1MB8 LINE L1 -2 6176 6080 281 303 0 0 chr1 24124845 24124911 -258068753 + L2 LINE L2 3241 3306 -7 2297 99 3 7 chr1 24124911 24125214 -258068450 + AluSx SINE Alu 1 302 -10 216 67 0 0 chr1 24125402 24125432 -258068232 + (T)n Simple_repeat Simple_repeat 1 30 0 724 207 35 0 chr1 24125729 24125874 -258067790 + MIR SINE MIR 107 256 -6 445 280 140 33 chr1 24126276 24126741 -258066923 + L2 LINE L2 2740 3252 -61 1146 139 41 0 chr1 24126974 24127146 -258066518 - AluSg/x SINE Alu 0 310 132 2507 73 0 0 chr1 24127146 24127449 -258066215 - AluY SINE Alu -8 303 1 24 0 0 0 chr1 24127450 24127474 -258066190 + AT_rich Low_complexity Low_complexity 1 24 0 218 310 17 78 chr1 24127565 24127681 -258065983 - MIR SINE MIR -65 197 89 252 237 40 13 chr1 24127757 24127833 -258065831 + L2 LINE L2 3195 3272 0 334 311 43 32 chr1 24128166 24128219 -258065445 - L1ME4a LINE L1 0 6121 6070 897 171 32 69 chr1 24128219 24128325 -258065339 - MER3 DNA MER1_type 0 209 114 2129 137 0 3 chr1 24128325 24128625 -258065039 - AluJb SINE Alu -13 299 1 897 171 32 69 chr1 24128625 24128735 -258064929 - MER3 DNA MER1_type -95 114 1 334 311 43 32 chr1 24128735 24128958 -258064706 - L1ME4a LINE L1 -51 6070 5842 297 211 39 19 chr1 24129139 24129243 -258064421 - HAL1b LINE L1 -1 1347 1242 2388 69 0 0 chr1 24129261 24129537 -258064127 - AluSx SINE Alu -15 297 22 195 184 0 0 chr1 24129560 24129598 -258064066 + CT-rich Low_complexity Low_complexity 1 38 0 1752 185 24 0 chr1 24129600 24129892 -258063772 - AluJo SINE Alu -13 299 1 2044 123 10 29 chr1 24129895 24130204 -258063460 - AluJb SINE Alu -9 303 1 686 297 121 34 chr1 24130296 24130401 -258063263 - L1ME4a LINE L1 -116 6005 5911 2318 114 0 0 chr1 24130401 24130699 -258062965 - AluSx SINE Alu -14 298 1 686 297 121 34 chr1 24130699 24131064 -258062600 - L1ME4a LINE L1 -210 5911 5494 1608 188 7 7 chr1 24131066 24131348 -258062316 - AluJb SINE Alu -30 282 1 468 0 0 0 chr1 24131356 24131408 -258062256 + (TTA)n Simple_repeat Simple_repeat 2 53 0 305 98 0 0 chr1 24131411 24131452 -258062212 - FAM SINE Alu -19 156 116 437 255 155 75 chr1 24131487 24131836 -258061828 - L2 LINE L2 -1 3312 2936 715 263 43 5 chr1 24132084 24132293 -258061371 + MIR SINE MIR 41 257 -5 324 257 160 35 chr1 24132293 24132437 -258061227 + MIR SINE MIR 37 198 -64 640 249 129 5 chr1 24132675 24132876 -258060788 - Charlie8 DNA MER1_type -2191 226 1 246 264 0 69 chr1 24133009 24133096 -258060568 - L1ME4a LINE L1 -701 5469 5389 209 224 69 0 chr1 24133279 24133337 -258060327 + L2 LINE L2 3248 3309 -4 2460 106 0 0 chr1 24133545 24133857 -258059807 - AluSx SINE Alu 0 312 1 372 298 62 36 chr1 24134141 24134366 -258059298 + L2 LINE L2 2854 3084 -188 323 269 77 51 chr1 24134410 24134566 -258059098 - L2 LINE L2 -93 3179 3020 2185 116 0 17 chr1 24134731 24135024 -258058640 - AluSx SINE Alu -18 294 7 2352 82 14 3 chr1 24135041 24135334 -258058330 - AluSq SINE Alu -15 298 3 498 198 0 0 chr1 24135335 24135421 -258058243 - AluJ/FLAM SINE Alu -225 87 2 2661 51 0 16 chr1 24137517 24137831 -258055833 + AluY SINE Alu 1 309 -2 255 227 126 17 chr1 24137834 24137953 -258055711 + L1ME4a LINE L1 5988 6119 -2 269 279 110 15 chr1 24138362 24138498 -258055166 - MIR SINE MIR -2 260 112 1328 134 97 15 chr1 24138557 24138826 -258054838 - L1MB7 LINE L1 -20 6164 5874 372 246 146 8 chr1 24139104 24139234 -258054430 - MIR SINE MIR -111 151 4 544 314 69 16 chr1 24139614 24139859 -258053805 + MIR SINE MIR 2 259 -3 459 265 77 12 chr1 24140486 24140656 -258053008 - MIR SINE MIR -10 252 72 2414 92 3 0 chr1 24141366 24141671 -258051993 - AluSq SINE Alu -7 306 1 2497 79 3 0 chr1 24141686 24141990 -258051674 - AluSq SINE Alu -8 305 1 1830 69 4 4 chr1 24143318 24143549 -258050115 + AluSg/x SINE Alu 73 303 -6 349 352 21 7 chr1 24145034 24145176 -258048488 - MIR SINE MIR -80 182 39 268 140 60 0 chr1 24145306 24145356 -258048308 + L2 LINE L2 3261 3313 0 216 255 0 20 chr1 24146006 24146057 -258047607 + MIR SINE MIR 17 66 -142 1833 133 61 27 chr1 24146265 24146558 -258047106 + AluJo SINE Alu 1 303 -9 392 294 127 22 chr1 24146707 24146944 -258046720 + MIR SINE MIR 2 262 0 397 270 90 0 chr1 24147213 24147324 -258046340 + MIR SINE MIR 49 169 -93 384 312 24 0 chr1 24147507 24147632 -258046032 + MIR SINE MIR 1 128 -134 941 110 0 48 chr1 24147632 24147778 -258045886 - AluSg/x SINE Alu -2 310 172 434 209 40 61 chr1 24147781 24147875 -258045789 + MIR SINE MIR 117 209 -53 2101 111 7 4 chr1 24147875 24148186 -258045478 + AluSx SINE Alu 3 314 0 434 209 40 61 chr1 24148186 24148238 -258045426 + MIR SINE MIR 209 261 -1 2368 104 0 10 chr1 24148324 24148632 -258045032 - AluSq SINE Alu -8 305 1 408 206 157 0 chr1 24148660 24148762 -258044902 - L2 LINE L2 -7 3306 3189 416 281 166 25 chr1 24149390 24149625 -258044039 - L2 LINE L2 -9 3304 3037 2099 132 0 10 chr1 24149856 24150152 -258043512 - AluJb SINE Alu -19 293 1 2190 117 3 7 chr1 24150152 24150451 -258043213 - AluSx SINE Alu -13 299 2 299 297 115 5 chr1 24150544 24150736 -258042928 - L2 LINE L2 -866 2448 2236 683 171 16 16 chr1 24151205 24151334 -258042330 + FLAM_C SINE Alu 1 129 -14 395 309 20 39 chr1 24151407 24151611 -258042053 + L1ME LINE L1 5620 5819 -302 335 155 10 52 chr1 24151640 24151717 -258041947 + Alu SINE Alu 1 55 -253 2221 111 0 0 chr1 24151790 24152079 -258041585 - AluSx SINE Alu -23 289 1 837 215 48 0 chr1 24152163 24152349 -258041315 + MER3 DNA MER1_type 15 209 0 246 170 85 0 chr1 24152310 24152357 -258041307 - MER3 DNA MER1_type -119 90 40 * 315 71 0 0 chr1 24152477 24152519 -258041145 + (T)n Simple_repeat Simple_repeat 1 42 0 432 224 9 52 chr1 24152561 24152677 -258040987 + L2 LINE L2 3189 3299 -14 2101 121 21 0 chr1 24152680 24152969 -258040695 + AluSx SINE Alu 1 295 -17 1915 138 41 7 chr1 24153055 24153346 -258040318 - AluJb SINE Alu -8 304 4 253 253 66 0 chr1 24154192 24154283 -258039381 + MIR SINE MIR 16 112 -96 299 258 11 118 chr1 24154315 24154501 -258039163 + MIR SINE MIR 97 262 0 403 232 222 16 chr1 24154969 24155154 -258038510 + MIR SINE MIR 37 259 -3 1701 147 34 34 chr1 24155301 24155594 -258038070 + AluJo SINE Alu 1 293 -19 2304 156 17 46 chr1 24155692 24155731 -258037933 - MLT1C LTR MaLR 0 467 428 2498 97 0 0 chr1 24155731 24156042 -258037622 + AluY SINE Alu 1 311 0 2304 156 17 46 chr1 24156042 24156301 -258037363 - MLT1C LTR MaLR -39 428 186 2421 87 0 0 chr1 24156301 24156600 -258037064 - AluY SINE Alu -12 299 1 2304 156 17 46 chr1 24156600 24156781 -258036883 - MLT1C LTR MaLR -281 186 1 2400 97 0 0 chr1 24156857 24157155 -258036509 + AluSg SINE Alu 1 298 -12 657 162 9 0 chr1 24157544 24157655 -258036009 + FRAM SINE Alu 1 111 -65 374 289 53 59 chr1 24157801 24157953 -258035711 - MIR SINE MIR -45 217 67 1780 127 24 103 chr1 24157958 24158298 -258035366 + AluYb8 SINE Alu 1 313 -5 2427 99 0 0 chr1 24158336 24158638 -258035026 + AluSx SINE Alu 1 302 -10 358 303 87 53 chr1 24158645 24158909 -258034755 + L2 LINE L2 2702 2974 -340 1385 184 31 23 chr1 24158909 24159165 -258034499 + AluJb SINE Alu 39 296 -16 430 360 20 45 chr1 24159191 24159483 -258034181 + L2 LINE L2 2988 3272 0 939 241 131 32 chr1 24159748 24160232 -258033432 + L2 LINE L2 2772 3313 0 343 275 141 7 chr1 24161204 24161353 -258032311 - MIR SINE MIR -66 196 28 486 279 14 7 chr1 24161491 24161631 -258032033 - MIR3 SINE MIR -65 143 3 390 243 63 0 chr1 24161804 24161915 -258031749 - MLT1C LTR MaLR -291 176 59 2504 67 0 0 chr1 24161988 24162286 -258031378 + AluY SINE Alu 1 298 -13 198 0 0 0 chr1 24162286 24162308 -258031356 + (TA)n Simple_repeat Simple_repeat 2 23 0 2254 111 0 0 chr1 24162320 24162608 -258031056 + AluSx SINE Alu 1 288 -24 975 159 7 0 chr1 24162641 24162792 -258030872 + AluJb SINE Alu 159 310 -2 308 256 117 104 chr1 24163451 24163767 -258029897 - L2 LINE L2 0 3272 2953 245 206 130 54 chr1 24164567 24164659 -258029005 - L2 LINE L2 -37 3235 3137 1103 209 143 59 chr1 24164698 24165273 -258028391 - L2 LINE L2 0 3313 2674 2185 102 0 36 chr1 24165273 24165578 -258028086 + AluSx SINE Alu 1 294 -18 1103 209 143 59 chr1 24165578 24165678 -258027986 - L2 LINE L2 -639 2674 2584 2162 231 150 18 chr1 24165759 24166607 -258027057 - L2 LINE L2 -1119 2195 1236 245 307 129 0 chr1 24166712 24166813 -258026851 - L2 LINE L2 -254 3059 2946 1045 157 0 18 chr1 24167248 24167414 -258026250 + FRAM SINE Alu 1 160 -16 186 250 71 0 chr1 24167593 24167649 -258026015 + MIR SINE MIR 87 146 -62 528 281 65 74 chr1 24167704 24167903 -258025761 + MIR SINE MIR 2 198 -64 2185 102 3 10 chr1 24167903 24168025 -258025639 + AluSq SINE Alu 14 135 -178 2420 90 3 0 chr1 24168025 24168324 -258025340 + AluSx SINE Alu 2 301 -11 2185 102 3 10 chr1 24168324 24168494 -258025170 + AluSq SINE Alu 135 304 -9 528 281 65 74 chr1 24168494 24168558 -258025106 + MIR SINE MIR 198 261 -1 264 275 0 0 chr1 24168652 24168721 -258024943 - L2 LINE L2 -35 3237 3169 27 62 0 0 chr1 24171220 24171268 -258022396 + GC_rich Low_complexity Low_complexity 1 48 0 413 286 76 12 chr1 24171311 24171532 -258022132 + MIR SINE MIR 20 256 -6 423 303 62 0 chr1 24172230 24172392 -258021272 - MIR SINE MIR -65 197 26 1998 139 14 3 chr1 24172920 24173214 -258020450 + AluJb SINE Alu 1 297 -15 238 250 47 0 chr1 24173495 24173559 -258020105 + MIR SINE MIR 81 147 -61 2078 123 10 3 chr1 24174006 24174298 -258019366 + AluSx SINE Alu 1 294 -18 181 83 56 0 chr1 24175025 24175061 -258018603 + (CACCC)n Simple_repeat Simple_repeat 3 40 0 287 156 125 83 chr1 24180734 24180830 -258012834 - MIR3 SINE MIR 0 208 109 295 277 24 0 chr1 24180869 24180952 -258012712 + MIR SINE MIR 108 192 -70 2634 54 0 10 chr1 24181321 24181635 -258012029 + AluY SINE Alu 1 311 0 1188 143 0 6 chr1 24182575 24182750 -258010914 - AluJb SINE Alu -12 300 127 2376 49 49 0 chr1 24182866 24183153 -258010511 - AluY SINE Alu -10 301 1 207 0 0 0 chr1 24183781 24183804 -258009860 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 195 288 91 0 chr1 24184483 24184549 -258009115 + L2 LINE L2 3181 3252 -61 1860 93 0 8 chr1 24184634 24184870 -258008794 + AluSq SINE Alu 1 234 -79 202 29 57 0 chr1 24184870 24184905 -258008759 + (TA)n Simple_repeat Simple_repeat 2 38 0 266 238 286 0 chr1 24185358 24185442 -258008222 - L2 LINE L2 -4 3268 3161 2225 130 0 0 chr1 24186015 24186315 -258007349 - AluSx SINE Alu -12 300 1 522 143 24 0 chr1 24186724 24186808 -258006856 + AluSg/x SINE Alu 216 301 -11 2688 49 0 0 chr1 24186987 24187295 -258006369 + AluY SINE Alu 2 309 -2 778 236 94 11 chr1 24187382 24187573 -258006091 + MIR SINE MIR 2 208 -54 381 246 120 16 chr1 24187588 24187771 -258005893 - L1MC5 LINE L1 -38 7923 7722 2183 114 0 10 chr1 24187771 24188070 -258005594 + AluSx SINE Alu 1 296 -16 216 0 0 0 chr1 24188071 24188095 -258005569 + (CA)n Simple_repeat Simple_repeat 2 25 0 371 289 23 0 chr1 24188095 24188197 -258005467 - L1MC4 LINE L1 -1339 6703 6614 * 378 239 45 23 chr1 24188147 24188235 -258005429 + L1MC4 LINE L1 6614 6703 -1339 2106 91 0 4 chr1 24188249 24188538 -258005126 + AluY SINE Alu 21 308 0 1841 171 0 3 chr1 24188623 24188909 -258004755 + AluJo SINE Alu 1 285 -27 626 211 51 58 chr1 24188921 24189077 -258004587 - FRAM SINE Alu -11 155 1 2309 113 0 0 chr1 24189087 24189389 -258004275 - AluSx SINE Alu -10 302 1 415 167 94 0 chr1 24189477 24189573 -258004091 + MER104 DNA Tc2 74 178 -2 851 236 57 22 chr1 24189629 24189858 -258003806 - MIR SINE MIR -17 245 9 2079 117 0 0 chr1 24190046 24190319 -258003345 - AluSx SINE Alu -13 299 27 2155 102 42 0 chr1 24190323 24190606 -258003058 - AluSg SINE Alu -15 295 1 2256 101 23 7 chr1 24190619 24190926 -258002738 - AluSx SINE Alu 0 312 1 577 232 134 0 chr1 24191690 24191832 -258001832 + MIR3 SINE MIR 45 205 -3 187 139 56 0 chr1 24192119 24192155 -258001509 - L2 LINE L2 -11 3302 3265 242 203 58 72 chr1 24192584 24192653 -258001011 + MIR SINE MIR 81 148 -60 200 208 21 0 chr1 24193052 24193100 -258000564 + (CTCGG)n Simple_repeat Simple_repeat 3 51 0 654 274 45 53 chr1 24193568 24193762 -257999902 + MIR SINE MIR 18 211 -51 2672 43 0 0 chr1 24193762 24194063 -257999601 + AluSc SINE Alu 1 301 -8 654 274 45 53 chr1 24194063 24194113 -257999551 + MIR SINE MIR 211 260 -2 573 254 14 0 chr1 24194116 24194254 -257999410 + MIR3 SINE MIR 55 194 -14 459 293 82 9 chr1 24194262 24194494 -257999170 - MER112 DNA MER1_type -11 249 1 1879 167 7 13 chr1 24194695 24195001 -257998663 + AluJb SINE Alu 1 304 -8 420 231 26 133 chr1 24195269 24195339 -257998325 - MIR SINE MIR -40 222 146 2398 76 21 0 chr1 24195339 24195629 -257998035 + AluSx SINE Alu 1 296 -16 420 231 26 133 chr1 24195629 24195753 -257997911 - MIR SINE MIR -116 146 49 427 242 0 17 chr1 24195838 24195958 -257997706 - MLT1F1 LTR MaLR 0 567 450 225 244 94 103 chr1 24196032 24196120 -257997544 - MLT1F1 LTR MaLR -268 281 194 2543 76 0 0 chr1 24196120 24196424 -257997240 - AluSx SINE Alu -8 304 1 225 244 94 103 chr1 24196424 24196548 -257997116 - MLT1F1 LTR MaLR -355 194 71 347 140 0 0 chr1 24196576 24196633 -257997031 - MLT1F LTR MaLR 0 542 486 1018 233 20 22 chr1 24196633 24196989 -257996675 - LTR2 LTR ERV1 0 449 1 2145 190 114 2 chr1 24196993 24197430 -257996234 - MLT1F LTR MaLR -54 488 3 651 181 191 71 chr1 24197454 24197736 -257995928 - HAL1 LINE L1 -864 1643 1328 727 285 99 2 chr1 24197742 24198059 -257995605 + MER115 DNA AcHobo 340 4031 0 183 222 0 44 chr1 24198060 24198105 -257995559 + MIR SINE MIR 92 134 -128 372 344 23 0 chr1 24198115 24198246 -257995418 + MIR SINE MIR 100 233 -29 3325 146 12 16 chr1 24198290 24198851 -257994813 + Tigger7 DNA MER2_type 21 579 -1908 1089 113 73 25 chr1 24198844 24199048 -257994616 + Tigger7 DNA MER2_type 2272 2485 -2 * 375 266 0 0 chr1 24199047 24199126 -257994538 + Tigger5 DNA MER2_type 1 79 -2244 * 1916 168 0 0 chr1 24199460 24199757 -257993907 - AluJb SINE Alu -15 297 1 225 278 42 0 chr1 24199980 24200052 -257993612 - MLT1E3 LTR MaLR -65 559 485 253 241 19 0 chr1 24200052 24200106 -257993558 - MIR SINE MIR -183 79 25 1952 158 0 3 chr1 24200106 24200403 -257993261 - AluJb SINE Alu -7 305 10 2507 63 0 0 chr1 24200411 24200711 -257992953 - AluY SINE Alu -11 300 1 262 298 64 21 chr1 24200780 24200874 -257992790 + MIR SINE MIR 29 126 -82 552 219 219 44 chr1 24200948 24201026 -257992638 - MIR SINE MIR -8 254 191 1865 117 24 103 chr1 24201026 24201229 -257992435 - AluYb8 SINE Alu -4 314 97 2270 82 36 0 chr1 24201229 24201510 -257992154 - AluY SINE Alu -18 293 3 2293 125 0 0 chr1 24201512 24201816 -257991848 - AluSg SINE Alu -6 304 1 1865 117 24 103 chr1 24201816 24201950 -257991714 - AluYb8 SINE Alu -222 96 1 552 219 219 44 chr1 24201950 24202076 -257991588 - MIR SINE MIR -71 191 14 668 67 0 0 chr1 24202181 24202270 -257991394 - L1PB1 LINE L1 -4 6147 6059 672 217 120 120 chr1 24202278 24202660 -257991004 + MLT1I LTR MaLR 7 388 -21 1142 184 28 18 chr1 24202665 24202882 -257990782 - MER20 DNA MER1_type 0 219 1 1894 137 47 3 chr1 24202895 24203194 -257990470 - AluSx SINE Alu 0 312 1 357 177 89 13 chr1 24203630 24203709 -257989955 - MIR SINE MIR -71 191 107 216 354 31 24 chr1 24203786 24203913 -257989751 + MER5B DNA MER1_type 7 134 -44 2611 55 3 0 chr1 24203923 24204231 -257989433 + AluY SINE Alu 1 309 -2 2473 83 0 0 chr1 24204231 24204532 -257989132 + AluSc SINE Alu 1 302 -7 301 157 29 57 chr1 24204532 24204602 -257989062 + L2 LINE L2 3160 3227 -86 2414 93 13 0 chr1 24204603 24204904 -257988760 - AluSp SINE Alu -8 305 1 1846 162 10 22 chr1 24204904 24205082 -257988582 - AluJb SINE Alu -2 310 131 263 27 0 27 chr1 24205082 24205119 -257988545 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1944 94 4 0 chr1 24205120 24205364 -257988300 - AluSp SINE Alu -68 245 1 1846 162 10 22 chr1 24205364 24205497 -257988167 - AluJb SINE Alu -180 132 1 187 238 0 71 chr1 24205632 24205674 -257987990 - MER5A DNA MER1_type -1 188 150 2298 95 0 14 chr1 24205678 24205974 -257987690 + AluSx SINE Alu 1 292 -20 2144 92 35 50 chr1 24205986 24206303 -257987361 + AluSx SINE Alu 1 312 0 1725 177 48 22 chr1 24206327 24206683 -257986981 - MLT1A1 LTR MaLR 0 365 1 1668 179 24 7 chr1 24206837 24207134 -257986530 + AluJb SINE Alu 1 302 -10 1793 110 110 18 chr1 24207335 24207616 -257986048 + AluSg1 SINE Alu 1 307 -2 350 270 108 18 chr1 24207712 24207823 -257985841 + MIR SINE MIR 14 134 -128 248 277 134 34 chr1 24207923 24208042 -257985622 + MIR SINE MIR 129 259 -3 193 319 11 43 chr1 24208382 24208476 -257985188 + MIR SINE MIR 24 114 -148 1864 157 11 0 chr1 24208490 24208777 -257984887 - AluJb SINE Alu -11 301 12 1617 190 26 0 chr1 24208854 24209122 -257984542 - AluJb SINE Alu -37 275 1 229 330 38 66 chr1 24212242 24212321 -257981343 - MIR SINE MIR -138 124 47 1232 196 88 28 chr1 24212321 24212606 -257981058 - AluSx SINE Alu -10 302 1 229 330 38 66 chr1 24212606 24212632 -257981032 - MIR SINE MIR -215 47 22 2478 87 0 3 chr1 24212953 24213264 -257980400 + AluSg SINE Alu 1 310 0 1257 165 19 5 chr1 24213469 24213675 -257979989 - AluSg/x SINE Alu -14 296 88 2313 84 3 3 chr1 24213728 24214015 -257979649 + AluY SINE Alu 1 287 -24 1213 146 43 0 chr1 24214015 24214200 -257979464 - AluJo SINE Alu -117 195 3 2064 149 7 0 chr1 24215730 24216026 -257977638 - AluSx SINE Alu -14 298 1 965 180 56 2 chr1 24216349 24216587 -257977077 + AluJo SINE Alu 1 298 -14 870 162 17 2 chr1 24217571 24217800 -257975864 + AluSx SINE Alu 22 305 -5 545 235 35 18 chr1 24217853 24218023 -257975641 - L1MC4a LINE L1 -1919 5889 5717 577 301 46 25 chr1 24218087 24218326 -257975338 - MIR SINE MIR 0 262 19 1588 159 43 53 chr1 24218361 24218574 -257975090 - AluJo SINE Alu -13 299 88 2286 104 0 0 chr1 24218574 24218863 -257974801 - AluSq SINE Alu -22 291 3 1588 159 43 53 chr1 24218863 24218951 -257974713 - AluJo SINE Alu -224 88 1 2638 51 0 16 chr1 24221046 24221359 -257972305 + AluY SINE Alu 1 308 -3 252 220 138 9 chr1 24221362 24221471 -257972193 + L1ME4a LINE L1 5988 6110 -11 295 272 110 15 chr1 24221890 24222026 -257971638 - MIR SINE MIR -2 260 112 1327 130 97 15 chr1 24222085 24222354 -257971310 - L1MB7 LINE L1 -20 6164 5874 408 246 146 8 chr1 24222632 24222762 -257970902 - MIR SINE MIR -111 151 4 589 314 69 16 chr1 24223142 24223387 -257970277 + MIR SINE MIR 2 259 -3 492 265 77 12 chr1 24224014 24224184 -257969480 - MIR SINE MIR -10 252 72 2442 88 3 0 chr1 24224894 24225200 -257968464 - AluSq SINE Alu -6 307 1 2483 79 3 0 chr1 24225215 24225519 -257968145 - AluSq SINE Alu -8 305 1 1824 69 4 4 chr1 24226847 24227078 -257966586 + AluSg/x SINE Alu 73 303 -6 370 298 38 67 chr1 24228562 24228828 -257964836 - MIR SINE MIR -23 185 35 284 140 60 0 chr1 24228834 24228884 -257964780 + L2 LINE L2 3261 3313 0 234 255 0 20 chr1 24229534 24229585 -257964079 + MIR SINE MIR 17 66 -142 1837 132 59 33 chr1 24229793 24230096 -257963568 + AluJo SINE Alu 1 311 -1 2459 96 0 0 chr1 24230209 24230511 -257963153 - AluSx SINE Alu -10 302 1 36 0 0 0 chr1 24230761 24230797 -257962867 + AT_rich Low_complexity Low_complexity 1 36 0 2247 62 7 7 chr1 24231012 24231286 -257962378 - AluY SINE Alu -37 274 1 1774 151 38 24 chr1 24231291 24231582 -257962082 - AluJb SINE Alu -17 295 1 2259 95 30 0 chr1 24231701 24231997 -257961667 + AluSx SINE Alu 1 305 -7 1435 132 41 101 chr1 24231999 24232317 -257961347 + AluSq SINE Alu 1 299 -14 328 299 31 31 chr1 24232499 24232626 -257961038 + MIR SINE MIR 11 137 -125 2463 97 0 0 chr1 24232793 24233103 -257960561 - AluSx SINE Alu -2 310 1 2131 113 30 7 chr1 24233533 24233834 -257959830 + AluSx SINE Alu 1 308 -4 219 184 189 160 chr1 24233922 24234094 -257959570 + L2 LINE L2 3101 3281 -32 2443 92 0 3 chr1 24234094 24234400 -257959264 - AluSq SINE Alu -8 305 1 219 184 189 160 chr1 24234400 24234433 -257959231 + L2 LINE L2 3281 3312 -1 191 204 45 0 chr1 24234501 24234545 -257959119 - MIR SINE MIR -63 145 100 1906 142 64 3 chr1 24234635 24234930 -257958734 + 7SLRNA srpRNA srpRNA 1 313 -7 22 0 0 0 chr1 24235140 24235162 -257958502 + AT_rich Low_complexity Low_complexity 1 22 0 2353 61 4 0 chr1 24235163 24235483 -257958181 + AluY SINE Alu 1 321 0 2396 92 3 0 chr1 24235602 24235896 -257957768 - AluSg SINE Alu -15 295 1 275 327 71 9 chr1 24235905 24236018 -257957646 - MIR SINE MIR -120 142 23 568 275 46 62 chr1 24236158 24236398 -257957266 - MIR SINE MIR -7 255 20 290 294 73 57 chr1 24236492 24236669 -257956995 - L2 LINE L2 -431 2883 2704 2045 118 4 0 chr1 24236737 24237017 -257956647 + AluSx SINE Alu 21 301 -11 357 228 416 0 chr1 24237079 24237228 -257956436 + L2 LINE L2 3023 3233 -80 2317 83 21 0 chr1 24237237 24237527 -257956137 - AluSp SINE Alu -17 296 1 21 0 0 0 chr1 24237527 24237548 -257956116 + AT_rich Low_complexity Low_complexity 1 21 0 739 169 46 8 chr1 24237548 24237678 -257955986 - AluJo SINE Alu -177 135 1 259 206 87 54 chr1 24237679 24237745 -257955919 + L2 LINE L2 3218 3289 -24 2307 118 7 0 chr1 24237745 24238051 -257955613 - AluSx SINE Alu -4 308 1 259 206 87 54 chr1 24238051 24238076 -257955588 + L2 LINE L2 3289 3312 -1 660 334 63 52 chr1 24238093 24238367 -257955297 + L2 LINE L2 1777 2046 -1268 2250 99 0 33 chr1 24238367 24238670 -257954994 + AluSx SINE Alu 1 293 -19 660 334 63 52 chr1 24238670 24238997 -257954667 + L2 LINE L2 2046 2385 -929 337 323 89 46 chr1 24239223 24239376 -257954288 + L2 LINE L2 2298 2443 -871 2322 94 0 10 chr1 24239376 24239674 -257953990 - AluSx SINE Alu -17 295 1 337 323 89 46 chr1 24239674 24239802 -257953862 + L2 LINE L2 2443 2591 -723 2250 113 0 3 chr1 24239850 24240152 -257953512 - AluSq SINE Alu -12 301 1 2108 125 0 3 chr1 24240159 24240447 -257953217 - AluSc SINE Alu -22 287 1 534 163 96 104 chr1 24240513 24240661 -257953003 - MER113 DNA MER1_type? -252 269 122 2292 130 0 0 chr1 24240661 24240969 -257952695 + AluSg SINE Alu 1 308 -2 534 163 96 104 chr1 24240969 24241060 -257952604 - MER113 DNA MER1_type? -399 122 32 1073 139 6 6 chr1 24241060 24241273 -257952391 + AluJo SINE Alu 118 330 0 232 127 79 32 chr1 24241321 24241384 -257952280 + MER116 DNA Mariner 1 66 -14 2371 78 14 3 chr1 24241384 24241679 -257951985 + AluSq SINE Alu 1 298 -15 2179 116 0 17 chr1 24241696 24241989 -257951675 + AluSx SINE Alu 7 294 -18 376 294 188 33 chr1 24242038 24242310 -257951354 + L2 LINE L2 2866 3179 -93 417 293 62 36 chr1 24242354 24242579 -257951085 - L2 LINE L2 -188 3084 2854 2452 106 0 0 chr1 24242864 24243176 -257950488 + AluSx SINE Alu 1 312 0 226 224 69 0 chr1 24243392 24243450 -257950214 - L2 LINE L2 -4 3309 3248 236 264 0 69 chr1 24243633 24243720 -257949944 + L1ME LINE L1 5389 5469 -695 607 249 129 5 chr1 24243853 24244054 -257949610 + Charlie8 DNA MER1_type 1 226 -2191 356 264 153 28 chr1 24244292 24244436 -257949228 - MIR SINE MIR -64 198 37 783 258 43 5 chr1 24244436 24244645 -257949019 - MIR SINE MIR -5 257 41 2528 78 0 0 chr1 24244857 24245163 -257948501 - AluSp SINE Alu -7 306 1 720 179 0 30 chr1 24245266 24245400 -257948264 + FLAM_C SINE Alu 1 130 -3 2120 108 18 0 chr1 24245405 24245717 -257947947 + AluSx SINE Alu 1 317 0 2224 104 0 0 chr1 24245719 24246018 -257947646 + AluSg SINE Alu 4 302 0 2411 72 0 47 chr1 24246038 24246356 -257947308 - AluY SINE Alu -8 303 1 2372 75 0 3 chr1 24246356 24246650 -257947014 - AluSx SINE Alu -19 293 1 542 239 58 22 chr1 24246709 24246888 -257946776 - L1MC/D LINE L1 -740 5572 5476 2437 74 3 3 chr1 24247058 24247356 -257946308 - AluSp SINE Alu -15 298 1 2324 98 0 3 chr1 24247694 24247999 -257945665 + AluSg SINE Alu 1 304 -6 2549 56 0 7 chr1 24248058 24248361 -257945303 + AluY SINE Alu 1 301 -10 251 346 132 11 chr1 24248380 24248646 -257945018 + L2 LINE L2 2369 2666 -648 323 194 41 102 chr1 24248727 24248825 -257944839 - MER5B DNA MER1_type -3 175 84 2333 102 16 0 chr1 24248826 24249130 -257944534 - AluSp SINE Alu -3 310 2 2388 89 0 0 chr1 24249131 24249424 -257944240 - AluSg SINE Alu -17 293 1 1784 142 84 0 chr1 24249431 24249705 -257943959 - AluJb SINE Alu -15 297 1 2456 101 0 0 chr1 24249717 24250025 -257943639 - AluSx SINE Alu -4 308 1 312 274 22 74 chr1 24250030 24250165 -257943499 - L2 LINE L2 0 3272 3145 2354 87 19 19 chr1 24250184 24250494 -257943170 - AluSx SINE Alu 0 312 3 285 89 0 0 chr1 24250510 24250555 -257943109 + (T)n Simple_repeat Simple_repeat 1 45 0 299 351 136 35 chr1 24250575 24250914 -257942750 + L2 LINE L2 2836 3208 -64 920 210 75 71 chr1 24251242 24251509 -257942155 - MER115 DNA AcHobo -8 685 418 1873 150 75 112 chr1 24251514 24251620 -257942044 + MLT1D LTR MaLR 6 114 -391 854 147 0 0 chr1 24251620 24251736 -257941928 + FLAM_C SINE Alu 1 116 -17 1873 150 75 112 chr1 24251736 24252148 -257941516 + MLT1D LTR MaLR 114 505 0 744 221 191 4 chr1 24252158 24252420 -257941244 - MER115 DNA AcHobo -281 412 102 219 178 200 0 chr1 24252425 24252470 -257941194 + MIR SINE MIR 89 142 -66 351 267 79 69 chr1 24252782 24252984 -257940680 + L2 LINE L2 2848 3051 -262 25 51 0 0 chr1 24253111 24253150 -257940514 + AT_rich Low_complexity Low_complexity 1 39 0 2764 159 51 30 chr1 24253183 24253756 -257939908 - L1MB3 LINE L1 -1 6182 5598 189 292 21 0 chr1 24253805 24253853 -257939811 + L2 LINE L2 3143 3191 -81 244 273 193 0 chr1 24253854 24253942 -257939722 + L2 LINE L2 3109 3213 -59 2294 101 13 13 chr1 24254269 24254577 -257939087 - AluSg SINE Alu 0 310 3 564 222 151 0 chr1 24254577 24254703 -257938961 - FAM SINE Alu -29 156 12 766 164 8 15 chr1 24254806 24254940 -257938724 + FLAM_A SINE Alu 1 133 0 265 283 243 17 chr1 24254979 24255156 -257938508 + MIR SINE MIR 2 218 -44 2421 109 0 0 chr1 24255400 24255711 -257937953 + AluSx SINE Alu 1 311 -1 239 313 169 0 chr1 24255921 24256004 -257937660 + MIR SINE MIR 2 99 -109 1145 165 192 4 chr1 24256184 24256444 -257937220 + MER21B LTR ERV1 354 662 -201 339 258 13 66 chr1 24256608 24256704 -257936960 + L2 LINE L2 2622 2709 -605 691 213 0 22 chr1 24256704 24256840 -257936824 + FLAM_A SINE Alu 1 133 0 339 258 13 66 chr1 24256840 24256894 -257936770 + L2 LINE L2 2709 2764 -550 509 154 43 111 chr1 24256933 24256978 -257936686 + MER5A DNA MER1_type 27 74 -115 2442 81 3 0 chr1 24256978 24257274 -257936390 - AluSq SINE Alu -16 297 1 509 154 43 111 chr1 24257274 24257345 -257936319 + MER5A DNA MER1_type 74 135 -54 2245 111 0 10 chr1 24257345 24257643 -257936021 - AluSx SINE Alu -17 295 1 334 277 11 21 chr1 24257643 24257737 -257935927 - L3 LINE CR1 -445 1132 1040 2482 82 0 0 chr1 24258117 24258420 -257935244 - AluY SINE Alu -8 303 1 190 284 118 29 chr1 24258742 24258844 -257934820 + L2 LINE L2 2548 2658 -656 2571 59 7 0 chr1 24258887 24259194 -257934470 - AluY SINE Alu -2 309 1 439 242 187 16 chr1 24259255 24259437 -257934227 - MIR SINE MIR -30 232 20 744 224 41 0 chr1 24259810 24259980 -257933684 - MER113 DNA MER1_type? -3 518 342 430 173 13 0 chr1 24259985 24260060 -257933604 + MIR SINE MIR 12 87 -175 220 215 169 15 chr1 24260069 24260134 -257933530 + L2 LINE L2 3239 3313 0 1071 158 38 6 chr1 24260992 24261175 -257932489 + MER5A DNA MER1_type 1 189 0 372 297 50 0 chr1 24261383 24261484 -257932180 + MIR SINE MIR 35 140 -68 282 163 0 0 chr1 24261558 24261607 -257932057 + L2 LINE L2 1384 1432 -1882 255 290 0 86 chr1 24261573 24261666 -257931998 - L2 LINE L2 -1129 2185 2101 * 2620 237 144 80 chr1 24261676 24262305 -257931359 + L2 LINE L2 1430 2018 -1295 2711 48 0 0 chr1 24262305 24262614 -257931050 - AluY SINE Alu -2 309 1 1592 181 0 41 chr1 24262615 24262908 -257930756 - AluJo SINE Alu -31 281 1 2620 237 144 80 chr1 24262908 24263370 -257930294 + L2 LINE L2 2018 2449 -864 450 145 0 0 chr1 24263370 24263439 -257930225 - AluJb SINE Alu -92 220 152 2620 237 144 80 chr1 24263439 24264068 -257929596 + L2 LINE L2 2449 3311 -2 2468 53 0 10 chr1 24264083 24264382 -257929282 - AluY SINE Alu -15 296 1 1698 137 59 42 chr1 24264403 24264574 -257929090 - AluSx SINE Alu 0 312 132 2479 57 3 17 chr1 24264574 24264875 -257928789 - AluSp SINE Alu -16 297 1 1698 137 59 42 chr1 24264875 24265010 -257928654 - AluSx SINE Alu -180 132 1 1257 178 0 61 chr1 24265010 24265179 -257928485 - AluJo SINE Alu -11 301 123 2347 79 10 10 chr1 24265179 24265483 -257928181 - AluSc SINE Alu -5 304 1 2178 127 7 0 chr1 24265485 24265785 -257927879 - AluSx SINE Alu -10 302 1 1257 178 0 61 chr1 24265785 24265876 -257927788 - AluJo SINE Alu -190 122 54 296 275 121 67 chr1 24266157 24266306 -257927358 - MER5A DNA MER1_type -7 182 15 244 339 31 0 chr1 24266308 24266373 -257927291 + L3b LINE CR1 1506 1572 -11 821 195 40 0 chr1 24266451 24266600 -257927064 + FRAM SINE Alu 1 155 -21 1855 134 105 9 chr1 24266613 24266955 -257926709 + THE1C LTR MaLR 1 375 0 1927 132 29 0 chr1 24266977 24267286 -257926378 + AluSx SINE Alu 1 317 0 245 183 94 153 chr1 24267298 24267500 -257926164 - MER112 DNA MER1_type -70 190 1 323 280 95 53 chr1 24267611 24267800 -257925864 - L1ME4a LINE L1 -157 5964 5768 319 262 9 65 chr1 24267784 24267891 -257925773 - L1MC4 LINE L1 -1338 6704 6604 * 199 56 93 0 chr1 24267893 24267947 -257925717 + (TA)n Simple_repeat Simple_repeat 1 59 0 2072 112 11 3 chr1 24267949 24268234 -257925430 - AluSq SINE Alu -26 287 1 907 162 14 0 chr1 24268234 24268376 -257925288 - FRAM SINE Alu -12 164 21 23 0 0 0 chr1 24268448 24268471 -257925193 + AT_rich Low_complexity Low_complexity 1 23 0 488 214 129 34 chr1 24268815 24268993 -257924671 - MIR SINE MIR -1 261 67 2375 96 0 0 chr1 24269493 24269796 -257923868 - AluY SINE Alu -8 303 1 1451 165 116 15 chr1 24269800 24270067 -257923597 - AluJo SINE Alu -14 298 5 1598 157 97 0 chr1 24270069 24270337 -257923327 - AluJb SINE Alu -18 294 1 886 133 13 0 chr1 24270339 24270497 -257923167 - L1MA4 LINE L1 -3 6297 6138 904 45 0 27 chr1 24270502 24270614 -257923050 + AluY SINE Alu 194 302 -9 385 162 144 0 chr1 24270621 24270732 -257922932 - L1MA4 LINE L1 -168 6132 6006 188 161 0 0 chr1 24270742 24270773 -257922891 - MIR SINE MIR -225 37 7 1928 110 0 0 chr1 24271017 24271272 -257922392 + AluSg SINE Alu 44 298 -12 1132 171 9 43 chr1 24271905 24272116 -257921548 + AluJb SINE Alu 88 291 -21 354 219 305 0 chr1 24272676 24272781 -257920883 - MER5A DNA MER1_type -13 176 40 246 286 77 44 chr1 24272939 24273030 -257920634 - MIR3 SINE MIR -105 103 10 1497 126 137 36 chr1 24273730 24274008 -257919656 + AluSg SINE Alu 2 307 -3 2281 74 30 0 chr1 24274058 24274357 -257919307 + AluY SINE Alu 1 308 -3 478 214 189 19 chr1 24274452 24274611 -257919053 - MIR SINE MIR -18 244 59 225 321 36 12 chr1 24276510 24276594 -257917070 + L2 LINE L2 3150 3235 -37 2097 122 0 13 chr1 24277129 24277433 -257916231 - AluSx SINE Alu -12 300 1 265 287 96 11 chr1 24278079 24278173 -257915491 - MIR SINE MIR -108 154 53 371 255 209 20 chr1 24278187 24278340 -257915324 - MIR SINE MIR -41 221 40 311 200 143 0 chr1 24278348 24278418 -257915246 - FRAM SINE Alu -16 150 71 2130 87 0 7 chr1 24280085 24280391 -257913273 - AluSx SINE Alu 0 305 2 286 261 68 11 chr1 24280421 24280509 -257913155 + MIR SINE MIR 12 104 -158 4254 112 12 104 chr1 24280510 24280892 -257912772 - Tigger4(Zombi) DNA MER2_type 0 2731 2316 2375 39 0 48 chr1 24280892 24281203 -257912461 + AluY SINE Alu 1 296 -15 4254 112 12 104 chr1 24281203 24281373 -257912291 - Tigger4(Zombi) DNA MER2_type -415 2316 2132 2031 120 0 0 chr1 24281373 24281684 -257911980 + AluSx SINE Alu 1 311 0 4254 112 12 104 chr1 24281684 24281758 -257911906 - Tigger4(Zombi) DNA MER2_type -599 2132 2053 7066 63 14 12 chr1 24281758 24283371 -257910293 - SVA Other Other -723 1384 1 4254 112 12 104 chr1 24283371 24283531 -257910133 - Tigger4(Zombi) DNA MER2_type -678 2053 2028 1907 160 0 3 chr1 24283531 24283844 -257909820 - AluJb SINE Alu 0 312 1 4254 112 12 104 chr1 24283844 24283939 -257909725 - Tigger4(Zombi) DNA MER2_type -703 2028 1926 2344 89 0 13 chr1 24283941 24284257 -257909407 - AluSx SINE Alu 0 312 1 434 249 287 31 chr1 24285050 24285339 -257908325 - L2 LINE L2 -25 3288 2926 2357 86 0 0 chr1 24285341 24285654 -257908010 + AluSq SINE Alu 1 313 0 866 200 40 6 chr1 24285689 24285864 -257907800 + MER5A DNA MER1_type 1 181 -8 225 341 30 30 chr1 24286016 24286148 -257907516 + L2 LINE L2 2733 2864 -450 426 331 7 14 chr1 24286190 24286335 -257907329 + L2 LINE L2 2940 3083 -189 491 331 89 72 chr1 24286418 24286723 -257906941 - L1MC4a LINE L1 -1628 6180 5865 1439 159 132 12 chr1 24286723 24287001 -257906663 + AluJb SINE Alu 1 302 0 491 331 89 72 chr1 24287001 24287112 -257906552 - L1MC4a LINE L1 -1943 5865 5757 2014 194 120 37 chr1 24287116 24287626 -257906038 + MER74B LTR ERVL 56 607 -15 376 246 105 26 chr1 24288057 24288171 -257905493 + MIR3 SINE MIR 13 135 -73 717 203 264 66 chr1 24288274 24288698 -257904966 + LTR33 LTR ERVL 14 521 0 727 113 50 78 chr1 24288709 24288850 -257904814 - AluJb SINE Alu -174 138 2 466 273 0 16 chr1 24289344 24289497 -257904167 + AluSg/x SINE Alu 174 309 0 338 278 61 83 chr1 24289497 24289558 -257904106 - L2 LINE L2 -620 2694 2633 2028 67 50 21 chr1 24289558 24289841 -257903823 + AluY SINE Alu 2 292 -19 2428 42 10 0 chr1 24289843 24290150 -257903514 + AluY SINE Alu 1 310 -1 338 278 61 83 chr1 24290150 24290265 -257903399 - L2 LINE L2 -682 2632 2519 1116 275 84 28 chr1 24290271 24290845 -257902819 - L2 LINE L2 -1347 1967 1362 2081 128 0 0 chr1 24291166 24291464 -257902200 + AluSx SINE Alu 1 298 -14 324 291 86 0 chr1 24291652 24291769 -257901895 - MIR3 SINE MIR -1 207 81 1044 158 0 2 chr1 24291786 24292243 -257901421 + (CAT)n Simple_repeat Simple_repeat 1 456 0 281 241 69 11 chr1 24292291 24292378 -257901286 - MIR SINE MIR -70 192 101 806 275 66 49 chr1 24292603 24292641 -257901023 + L2 LINE L2 2677 2713 -600 1899 145 0 13 chr1 24292641 24292945 -257900719 + AluSx SINE Alu 1 300 -12 806 275 66 49 chr1 24292945 24293013 -257900651 + L2 LINE L2 2713 2778 -535 2267 72 0 30 chr1 24293013 24293317 -257900347 + AluY SINE Alu 1 295 -16 806 275 66 49 chr1 24293317 24293809 -257899855 + L2 LINE L2 2778 3280 -33 760 232 54 29 chr1 24293812 24294053 -257899611 - MIR SINE MIR -13 249 3 2052 146 0 9 chr1 24294110 24294425 -257899239 + AluSx SINE Alu 1 312 0 1567 292 60 21 chr1 24294567 24294691 -257898973 + L1ME3A LINE L1 5273 5391 -771 2098 94 37 10 chr1 24294691 24294815 -257898849 + AluSq SINE Alu 1 120 -193 2423 59 7 3 chr1 24294815 24295122 -257898542 + AluY SINE Alu 1 308 -3 2098 94 37 10 chr1 24295122 24295296 -257898368 + AluSq SINE Alu 120 307 -6 1567 292 60 21 chr1 24295296 24295826 -257897838 + L1ME3A LINE L1 5391 5952 -210 265 286 8 56 chr1 24295902 24296028 -257897636 + L1ME3A LINE L1 5963 6082 -88 2067 122 7 0 chr1 24296145 24296440 -257897224 + AluSq SINE Alu 1 297 -16 214 260 143 39 chr1 24296465 24296542 -257897122 - L2 LINE L2 -1 3271 3187 755 274 53 13 chr1 24296578 24296804 -257896860 + MIR SINE MIR 17 251 -11 993 34 0 0 chr1 24296806 24296925 -257896739 + AluY SINE Alu 181 299 -12 231 292 191 46 chr1 24296925 24297596 -257896068 - L2 LINE L2 -689 2625 1858 285 231 22 55 chr1 24297781 24297872 -257895792 - MIR SINE MIR -58 204 117 301 342 43 22 chr1 24297975 24298159 -257895505 - MER5A DNA MER1_type 0 189 2 221 0 0 33 chr1 24298584 24298614 -257895050 + (CGG)n Simple_repeat Simple_repeat 2 30 0 324 203 54 14 chr1 24298894 24298968 -257894696 + MIR SINE MIR 94 170 -92 1231 99 0 28 chr1 24299838 24300020 -257893644 + AluSg/x SINE Alu 131 307 -5 363 308 86 26 chr1 24300050 24300157 -257893507 - L2 LINE L2 -521 2793 2694 2144 125 0 0 chr1 24300157 24300453 -257893211 + AluSx SINE Alu 1 296 -16 363 308 86 26 chr1 24300453 24300579 -257893085 - L2 LINE L2 -620 2694 2546 806 271 47 111 chr1 24300844 24301084 -257892580 - MLT1K LTR MaLR -8 580 391 2241 110 0 0 chr1 24301084 24301392 -257892272 + AluSx SINE Alu 1 308 -4 806 271 47 111 chr1 24301392 24301685 -257891979 - MLT1K LTR MaLR -197 391 81 293 291 29 29 chr1 24302009 24302112 -257891552 + MIR SINE MIR 120 222 -40 348 83 0 0 chr1 24302133 24302181 -257891483 + (TTCA)n Simple_repeat Simple_repeat 3 50 0 261 290 165 67 chr1 24302182 24302406 -257891258 - L2 LINE L2 -12 3260 3015 204 193 18 70 chr1 24302405 24302462 -257891202 - MIR SINE MIR -11 251 198 * 380 326 7 22 chr1 24303119 24303254 -257890410 - MIR3 SINE MIR -61 147 15 489 306 50 6 chr1 24303450 24303610 -257890054 - MIR SINE MIR -65 197 31 670 290 16 16 chr1 24303714 24303907 -257889757 + MIR SINE MIR 1 193 -69 234 198 0 128 chr1 24304127 24304213 -257889451 + MER69 DNA AcHobo 2452 2526 0 504 211 141 21 chr1 24304221 24304363 -257889301 + MIR SINE MIR 102 260 -2 245 170 223 21 chr1 24304473 24304567 -257889097 - MIR SINE MIR -147 115 3 348 257 200 46 chr1 24305183 24305358 -257888306 + MIR SINE MIR 60 261 -1 813 278 36 20 chr1 24305434 24305682 -257887982 - MIR SINE MIR -9 253 2 263 293 61 41 chr1 24305682 24305820 -257887844 + MIR SINE MIR 52 192 -70 197 351 0 0 chr1 24306142 24306199 -257887465 + MIR SINE MIR 65 121 -141 550 249 52 3 chr1 24306276 24306446 -257887218 + MIR SINE MIR 19 262 0 1184 136 0 16 chr1 24306460 24306636 -257887028 - AluSg/x SINE Alu -3 307 133 2135 105 0 3 chr1 24306636 24306932 -257886732 - AluY SINE Alu -15 296 2 1184 136 0 16 chr1 24306932 24306946 -257886718 - AluSg/x SINE Alu -177 133 120 1655 243 89 8 chr1 24307000 24307473 -257886191 + LTR33 LTR ERVL 3 513 -8 478 324 47 0 chr1 24307578 24307726 -257885938 - L2 LINE L2 -2 3270 3116 1738 115 35 4 chr1 24307749 24308010 -257885654 + AluSx SINE Alu 1 269 -43 181 205 0 26 chr1 24308254 24308293 -257885371 + L2 LINE L2 3035 3072 -200 439 261 43 7 chr1 24308341 24308479 -257885185 - MIR SINE MIR -99 163 21 2297 89 3 0 chr1 24308656 24308959 -257884705 - AluSx SINE Alu -6 306 3 189 74 0 0 chr1 24309610 24309637 -257884027 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 260 281 16 62 chr1 24309805 24309933 -257883731 - L2 LINE L2 -174 3098 2977 440 276 97 7 chr1 24310153 24310298 -257883366 - MIR3 SINE MIR -35 173 16 367 245 132 0 chr1 24310465 24310571 -257883093 - MIR SINE MIR -64 198 79 2216 84 3 10 chr1 24311018 24311315 -257882349 + AluSc SINE Alu 1 295 -14 220 244 0 0 chr1 24311415 24311456 -257882208 - L2 LINE L2 -6 3266 3226 1417 188 0 0 chr1 24311646 24311886 -257881778 + AluJo SINE Alu 14 253 -59 718 229 17 52 chr1 24311913 24312144 -257881520 - MIR SINE MIR 0 262 40 2233 64 0 7 chr1 24312444 24312739 -257880925 - AluY SINE Alu -18 293 1 2277 98 0 0 chr1 24312739 24313036 -257880628 - AluSx SINE Alu -15 297 1 2106 207 47 7 chr1 24313048 24313493 -257880171 - MLT1C LTR MaLR -2 465 3 269 321 159 44 chr1 24313955 24314207 -257879457 + L2 LINE L2 2560 2840 -474 2249 116 0 0 chr1 24314326 24314629 -257879035 - AluSx SINE Alu -9 303 1 190 370 12 0 chr1 24314679 24314760 -257878904 + L2 LINE L2 2916 2997 -275 1448 174 65 4 chr1 24314818 24315093 -257878571 + AluJo SINE Alu 1 292 -20 369 226 98 0 chr1 24315230 24315332 -257878332 + MIR SINE MIR 42 153 -55 318 186 174 0 chr1 24315586 24315672 -257877992 - MIR3 SINE MIR -34 174 74 553 312 91 38 chr1 24316178 24316309 -257877355 - L2 LINE L2 -77 3236 3113 1621 141 108 7 chr1 24316309 24316586 -257877078 + AluSg SINE Alu 1 305 -5 553 312 91 38 chr1 24316586 24316932 -257876732 - L2 LINE L2 -200 3113 2787 2236 92 0 3 chr1 24316932 24317237 -257876427 - AluSx SINE Alu -8 304 1 553 312 91 38 chr1 24317237 24317591 -257876073 - L2 LINE L2 -526 2787 2325 343 297 58 7 chr1 24317663 24317801 -257875863 + L2 LINE L2 3168 3312 -1 910 182 0 0 chr1 24317854 24318013 -257875651 - AluSx SINE Alu 0 312 154 559 132 0 0 chr1 24318014 24318090 -257875574 - AluSx SINE Alu -235 77 2 2290 68 3 3 chr1 24318091 24318386 -257875278 - AluSx SINE Alu -13 299 5 1156 222 20 4 chr1 24318505 24318753 -257874911 - MIR SINE MIR -1 261 10 207 284 176 14 chr1 24318808 24318882 -257874782 + L2 LINE L2 3208 3293 -20 494 249 60 32 chr1 24318991 24319176 -257874488 - MIR SINE MIR -58 204 15 200 200 0 55 chr1 24319369 24319424 -257874240 + C-rich Low_complexity Low_complexity 6 57 0 254 276 69 23 chr1 24319745 24319832 -257873832 + L2 LINE L2 3182 3272 0 640 298 130 34 chr1 24319925 24320278 -257873386 + L2 LINE L2 2926 3312 -1 4382 90 67 7 chr1 24320585 24321184 -257872480 - MER41B LTR ERV1 0 635 1 325 193 0 0 chr1 24321343 24321400 -257872264 - L2 LINE L2 -1 3271 3215 290 315 43 0 chr1 24321760 24321852 -257871812 - L2 LINE L2 0 3272 3177 198 0 0 0 chr1 24321890 24321912 -257871752 + (T)n Simple_repeat Simple_repeat 1 22 0 314 211 0 13 chr1 24371926 24372002 -257821662 - MLT1C LTR MaLR -359 108 34 2373 81 0 0 chr1 24372004 24372313 -257821351 + AluY SINE Alu 1 309 -2 204 40 0 0 chr1 24372359 24372384 -257821280 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1700 175 0 3 chr1 24372512 24372804 -257820860 - AluJo SINE Alu -18 294 4 481 186 0 0 chr1 24373022 24373108 -257820556 + MIR SINE MIR 102 187 -75 273 191 0 0 chr1 24373123 24373170 -257820494 - L2 LINE L2 -3 3310 3264 333 281 175 9 chr1 24373759 24373873 -257819791 + L2 LINE L2 3136 3268 -4 407 258 38 23 chr1 24374677 24374809 -257818855 - MIR3 SINE MIR -30 178 45 268 267 0 103 chr1 24374970 24375021 -257818643 - MIR SINE MIR -50 212 178 1223 120 17 81 chr1 24375021 24375255 -257818409 + MER20 DNA MER1_type 1 219 0 268 267 0 103 chr1 24375255 24375319 -257818345 - MIR SINE MIR -84 178 109 670 203 196 0 chr1 24375323 24375481 -257818183 + MIR SINE MIR 69 257 -5 1846 191 98 32 chr1 24376502 24376974 -257816690 - MLT1D LTR MaLR 0 505 3 583 306 133 20 chr1 24376992 24377240 -257816424 - Charlie8 DNA MER1_type -2141 276 1 22 35 0 0 chr1 24377749 24377778 -257815886 + AT_rich Low_complexity Low_complexity 1 29 0 703 181 155 20 chr1 24378022 24378228 -257815436 + MIR SINE MIR 31 262 0 375 333 44 28 chr1 24378363 24378543 -257815121 - MIR SINE MIR -77 185 3 362 288 69 16 chr1 24379018 24379175 -257814489 + MIR SINE MIR 18 176 -58 1306 127 5 32 chr1 24379179 24379232 -257814432 + AluJo SINE Alu 87 140 -172 2192 96 0 10 chr1 24379232 24379533 -257814131 + AluY SINE Alu 1 298 -13 1306 127 5 32 chr1 24379533 24379700 -257813964 + AluJo SINE Alu 140 301 -11 2987 172 45 45 chr1 24379713 24380302 -257813362 - L1MB7 LINE L1 0 6184 5593 2238 68 7 36 chr1 24380302 24380609 -257813055 - AluSp SINE Alu -15 298 1 2987 172 45 45 chr1 24380609 24380682 -257812982 - L1MB7 LINE L1 -590 5594 5522 286 277 24 12 chr1 24380682 24380765 -257812899 + MIR SINE MIR 174 257 -5 847 184 30 24 chr1 24381119 24381287 -257812377 + AluJo SINE Alu 1 169 -143 1119 188 62 26 chr1 24381288 24381503 -257812161 + MER33 DNA MER1_type 5 236 -2349 1853 151 3 7 chr1 24381503 24381795 -257811869 + AluJo SINE Alu 1 291 -21 1119 188 62 26 chr1 24381795 24381887 -257811777 + MER33 DNA MER1_type 236 323 -1 594 281 70 5 chr1 24381928 24382113 -257811551 - MIR SINE MIR -46 216 20 366 265 80 37 chr1 24382375 24382567 -257811097 - MIR3 SINE MIR -1 207 1 306 254 21 14 chr1 24383729 24383871 -257809793 + (CGGGG)n Simple_repeat Simple_repeat 2 144 0 2074 117 0 3 chr1 24384166 24384464 -257809200 + AluSx SINE Alu 1 297 -15 324 0 0 0 chr1 24384469 24384505 -257809159 + (CA)n Simple_repeat Simple_repeat 2 37 0 1946 116 7 33 chr1 24384555 24384719 -257808945 - AluSx SINE Alu -19 293 139 2254 76 0 7 chr1 24384719 24385021 -257808643 - AluY SINE Alu -11 300 1 1946 116 7 33 chr1 24385021 24385157 -257808507 - AluSx SINE Alu -173 139 1 427 220 40 10 chr1 24385238 24385338 -257808326 + MIR SINE MIR 45 147 -61 222 284 62 12 chr1 24385900 24385981 -257807683 - L2 LINE L2 -5 3308 3224 2344 93 0 0 chr1 24386410 24386721 -257806943 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 24386785 24386806 -257806858 + AT_rich Low_complexity Low_complexity 1 21 0 1542 104 142 19 chr1 24387063 24387331 -257806333 + AluSg1 SINE Alu 1 301 -8 499 246 14 28 chr1 24387590 24387732 -257805932 + MIR SINE MIR 8 147 -115 221 300 42 58 chr1 24387998 24388118 -257805546 - MIR SINE MIR -42 220 103 2240 104 0 0 chr1 24388365 24388664 -257805000 + AluSg SINE Alu 2 300 -10 190 347 41 20 chr1 24388664 24388756 -257804908 + MIR3 SINE MIR 12 105 -103 24 32 0 0 chr1 24388910 24388941 -257804723 + AT_rich Low_complexity Low_complexity 1 31 0 247 345 0 0 chr1 24389100 24389210 -257804454 + A-rich Low_complexity Low_complexity 1 110 0 237 235 73 0 chr1 24389874 24389942 -257803722 - MIR SINE MIR -67 141 69 182 274 0 0 chr1 24390222 24390273 -257803391 + L2 LINE L2 3263 3313 0 225 271 86 14 chr1 24390280 24390350 -257803314 - MIR SINE MIR -112 150 76 186 43 0 0 chr1 24390358 24390381 -257803283 + (GAA)n Simple_repeat Simple_repeat 2 24 0 200 327 10 50 chr1 24390685 24390786 -257802878 + MIR SINE MIR 42 138 -70 488 328 51 15 chr1 24390796 24390991 -257802673 - MIR3 SINE MIR -3 205 4 264 217 43 14 chr1 24393031 24393100 -257800564 - MIR SINE MIR -131 131 61 344 238 0 12 chr1 24395356 24395440 -257798224 + MIR SINE MIR 57 139 -123 213 154 26 0 chr1 24395619 24395658 -257798006 + MIR SINE MIR 81 120 -88 235 266 100 108 chr1 24395909 24396150 -257797514 - MIR SINE MIR -4 258 20 185 268 14 70 chr1 24396183 24396254 -257797410 + L2 LINE L2 3204 3270 -2 187 307 80 0 chr1 24396266 24396341 -257797323 + MIR SINE MIR 127 207 -55 370 301 57 8 chr1 24396457 24396580 -257797084 - MIR SINE MIR -114 148 20 208 130 37 19 chr1 24396868 24396922 -257796742 + (CCCCG)n Simple_repeat Simple_repeat 2 56 0 348 327 0 9 chr1 24398099 24398209 -257795455 - MIR SINE MIR -82 126 18 2282 74 7 3 chr1 24398686 24398996 -257794668 - AluY SINE Alu 0 311 1 1658 119 72 18 chr1 24399039 24399317 -257794347 + AluSx SINE Alu 1 293 -19 207 268 0 122 chr1 24399915 24399964 -257793700 + MIR SINE MIR 51 88 -174 1517 176 65 7 chr1 24399964 24400254 -257793410 - AluJb SINE Alu -5 307 1 207 268 0 122 chr1 24400254 24400286 -257793378 + MIR SINE MIR 88 122 -140 346 276 75 0 chr1 24400585 24400766 -257792898 + MIR SINE MIR 51 252 -10 * 357 246 110 27 chr1 24400763 24400893 -257792771 - MIR SINE MIR -64 144 12 578 270 65 20 chr1 24401100 24401300 -257792364 + MIR SINE MIR 4 212 -50 2118 124 0 0 chr1 24401360 24401659 -257792005 - AluSx SINE Alu -13 299 1 1870 179 0 0 chr1 24401720 24402032 -257791632 - AluJb SINE Alu 0 312 1 1890 119 0 55 chr1 24402040 24402352 -257791312 - AluSx SINE Alu -17 295 1 556 206 167 33 chr1 24402429 24402609 -257791055 + MIR SINE MIR 59 262 0 528 242 132 11 chr1 24403052 24403242 -257790422 + MIR SINE MIR 38 250 -12 2247 83 0 16 chr1 24403316 24403629 -257790035 + AluY SINE Alu 1 308 -3 419 270 9 0 chr1 24403758 24403869 -257789795 + MIR SINE MIR 92 203 -59 749 168 0 0 chr1 24403948 24404103 -257789561 - AluJb SINE Alu 0 311 157 216 281 0 0 chr1 24404177 24404234 -257789430 - MIR SINE MIR -1 261 205 201 224 20 0 chr1 24404416 24404465 -257789199 + MIR SINE MIR 118 167 -95 1482 169 37 44 chr1 24404906 24405202 -257788462 - AluJo SINE Alu -18 294 1 1944 115 16 48 chr1 24405208 24405381 -257788283 - AluSc SINE Alu -5 304 144 2177 97 0 7 chr1 24405381 24405681 -257787983 - AluY SINE Alu -13 298 1 1944 115 16 48 chr1 24405681 24405821 -257787843 - AluSc SINE Alu -165 144 1 539 160 10 40 chr1 24405827 24405927 -257787737 - FLAM_A SINE Alu -14 128 32 266 355 47 0 chr1 24405945 24406052 -257787612 - MIR3 SINE MIR -54 154 43 531 291 95 0 chr1 24406109 24406267 -257787397 - MIR SINE MIR -70 192 20 712 295 45 0 chr1 24407177 24407401 -257786263 + MIR SINE MIR 3 236 -26 353 246 76 17 chr1 24407412 24407530 -257786134 + MIR SINE MIR 63 187 -75 1826 167 0 3 chr1 24407570 24407870 -257785794 - AluJo SINE Alu -13 299 1 855 172 0 8 chr1 24407990 24408124 -257785540 + FLAM_C SINE Alu 1 133 0 953 51 17 0 chr1 24408399 24408516 -257785148 + AluSq/x SINE Alu 13 131 -182 2084 101 10 7 chr1 24408518 24408815 -257784849 + AluSx SINE Alu 1 298 -14 738 125 58 8 chr1 24408995 24409115 -257784549 + AluJb SINE Alu 6 131 -181 2369 66 3 0 chr1 24409117 24409421 -257784243 + AluY SINE Alu 1 305 -6 2051 113 0 56 chr1 24409577 24409897 -257783767 + AluSx SINE Alu 1 302 -10 2163 72 0 30 chr1 24409902 24410206 -257783458 + AluY SINE Alu 1 295 -16 2386 42 0 7 chr1 24410248 24410536 -257783128 - AluY SINE Alu -11 300 15 2128 123 3 3 chr1 24410841 24411150 -257782514 + AluSx SINE Alu 1 309 -3 2068 43 0 8 chr1 24411328 24411586 -257782078 + AluY SINE Alu 54 309 -2 198 182 68 0 chr1 24412048 24412092 -257781572 - MIR SINE MIR -93 115 69 2143 106 0 23 chr1 24412163 24412466 -257781198 - AluSx SINE Alu -16 296 1 2114 103 10 0 chr1 24412466 24412757 -257780907 - AluSx SINE Alu -18 294 1 3389 119 15 96 chr1 24412757 24412798 -257780866 - L1MB7 LINE L1 -209 5975 5932 2224 91 0 0 chr1 24412798 24413085 -257780579 + AluSx SINE Alu 21 307 -5 3389 119 15 96 chr1 24413085 24413221 -257780443 - L1MB7 LINE L1 -252 5932 5787 769 168 8 8 chr1 24413221 24413352 -257780312 + AluJo/FLAM SINE Alu 1 131 -171 2141 93 3 20 chr1 24413352 24413652 -257780012 + AluSx SINE Alu 1 295 -17 3389 119 15 96 chr1 24413652 24413704 -257779960 - L1MB7 LINE L1 -396 5788 5733 1649 156 58 7 chr1 24413704 24413979 -257779685 - AluJb SINE Alu -21 291 3 3389 119 15 96 chr1 24413979 24414408 -257779256 - L1MB7 LINE L1 -451 5733 5374 2112 110 0 7 chr1 24414408 24414708 -257778956 - AluSq SINE Alu -15 298 1 3389 119 15 96 chr1 24414708 24414765 -257778899 - L1MB7 LINE L1 -810 5374 5314 261 0 0 0 chr1 24414775 24414804 -257778860 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 292 88 0 chr1 24414837 24414950 -257778714 - MIR SINE MIR -83 179 57 2088 137 0 0 chr1 24414967 24415274 -257778390 - AluSx SINE Alu 0 312 6 2412 44 17 0 chr1 24415278 24415576 -257778088 - AluY SINE Alu -8 303 1 208 269 0 0 chr1 24415588 24415640 -257778024 - L2 LINE L2 -1 3312 3261 229 183 50 17 chr1 24415746 24415806 -257777858 - L1ME4a LINE L1 0 6121 6060 213 238 250 0 chr1 24416087 24416171 -257777493 + MIR SINE MIR 71 175 -87 382 340 131 11 chr1 24416306 24416497 -257777167 + MIR SINE MIR 48 261 -1 200 322 56 0 chr1 24416498 24416588 -257777076 - L2 LINE L2 -19 3294 3200 607 299 51 8 chr1 24416659 24416893 -257776771 - MIR SINE MIR -6 256 13 420 20 0 0 chr1 24417065 24417114 -257776550 + (TG)n Simple_repeat Simple_repeat 2 50 0 2056 102 0 31 chr1 24417114 24417407 -257776257 - AluSx SINE Alu -28 284 1 1846 147 7 3 chr1 24417409 24417702 -257775962 - AluJb SINE Alu -18 294 1 647 338 26 4 chr1 24417767 24417998 -257775666 - MIR SINE MIR -5 257 22 498 264 78 0 chr1 24418206 24418335 -257775329 + MIR SINE MIR 123 261 -1 328 289 17 43 chr1 24418384 24418515 -257775149 - MIR SINE MIR -62 146 35 266 208 0 0 chr1 24418775 24418828 -257774836 - L2 LINE L2 -217 3055 3003 1771 113 62 0 chr1 24418899 24419174 -257774490 + AluSx SINE Alu 1 292 -20 529 293 77 49 chr1 24419185 24419431 -257774233 - MIR SINE MIR 0 262 10 541 292 60 43 chr1 24419853 24420086 -257773578 + MIR SINE MIR 20 256 -6 210 71 0 0 chr1 24420611 24420639 -257773025 + (A)n Simple_repeat Simple_repeat 1 28 0 229 253 103 35 chr1 24421544 24421631 -257772033 + MIR3 SINE MIR 10 102 -106 195 258 11 65 chr1 24421665 24421758 -257771906 - L2 LINE L2 -1 3271 3184 333 230 30 10 chr1 24422133 24422233 -257771431 + MIR SINE MIR 42 143 -65 218 268 0 0 chr1 24422585 24422641 -257771023 - MIR SINE MIR -111 151 96 276 262 90 16 chr1 24422680 24422802 -257770862 - MIR SINE MIR -96 166 36 903 74 8 8 chr1 24422813 24422935 -257770729 - AluJo SINE Alu -178 134 13 316 295 205 13 chr1 24423203 24423359 -257770305 - MIR SINE MIR -14 248 63 271 235 12 37 chr1 24423602 24423683 -257769981 - MIR SINE MIR -110 98 20 1642 93 110 0 chr1 24423780 24424016 -257769648 - AluSq SINE Alu -51 262 1 243 364 20 0 chr1 24424111 24424210 -257769454 - MIR SINE MIR -127 135 35 298 262 28 47 chr1 24424269 24424376 -257769288 + MIR3 SINE MIR 82 186 -22 308 255 255 7 chr1 24424646 24424799 -257768865 - MIR SINE MIR -50 212 22 270 0 0 0 chr1 24424996 24425026 -257768638 + (TG)n Simple_repeat Simple_repeat 1 30 0 324 324 88 7 chr1 24425132 24425280 -257768384 + MIR SINE MIR 25 184 -78 202 234 43 0 chr1 24425512 24425559 -257768105 + MIR SINE MIR 109 157 -105 365 266 51 46 chr1 24426321 24426515 -257767149 - MIR SINE MIR -62 146 3 300 268 45 27 chr1 24427626 24427738 -257765926 - MIR SINE MIR -90 172 59 1844 149 3 0 chr1 24427764 24428086 -257765578 - AluSx SINE Alu 0 312 1 2159 90 7 17 chr1 24428421 24428722 -257764942 + AluSx SINE Alu 1 298 -14 291 192 192 13 chr1 24428877 24428955 -257764709 + MER117 DNA MER1_type 1 92 -105 187 246 49 49 chr1 24428995 24429056 -257764608 + MIR SINE MIR 45 105 -103 1007 194 43 0 chr1 24429304 24429515 -257764149 + MIR SINE MIR 2 221 -41 339 283 88 0 chr1 24429572 24429685 -257763979 + MIR3 SINE MIR 32 154 -54 1867 179 3 0 chr1 24431115 24431416 -257762248 - AluJo SINE Alu -10 302 1 2306 95 9 49 chr1 24431604 24431781 -257761883 - AluSq SINE Alu 0 313 153 2325 110 0 0 chr1 24431781 24432082 -257761582 - AluSq SINE Alu -12 301 1 2306 95 9 49 chr1 24432082 24432230 -257761434 - AluSq SINE Alu -160 153 1 386 276 8 16 chr1 24432230 24432357 -257761307 - L1ME LINE L1 -421 5700 5575 613 303 66 89 chr1 24433151 24433369 -257760295 + L2 LINE L2 2720 2941 -331 2183 108 0 17 chr1 24433369 24433692 -257759972 - AluSg SINE Alu 0 318 1 1870 168 0 3 chr1 24433699 24433990 -257759674 - AluJb SINE Alu -22 290 1 613 303 66 89 chr1 24433990 24434327 -257759337 + L2 LINE L2 2947 3271 -1 1297 254 99 61 chr1 24434642 24435198 -257758466 - MLT1K LTR MaLR -10 578 2 688 160 14 35 chr1 24435742 24435886 -257757778 + MIR SINE MIR 46 186 -76 1889 146 3 17 chr1 24435888 24436190 -257757474 + AluJb SINE Alu 13 310 -2 857 150 0 0 chr1 24436192 24436325 -257757339 + FLAM_C SINE Alu 1 133 0 386 274 18 9 chr1 24436343 24436456 -257757208 - MIR SINE MIR -78 130 17 762 199 107 20 chr1 24436857 24437022 -257756642 + MER58C DNA MER1_type 1 187 -2233 2082 97 10 31 chr1 24437022 24437312 -257756352 - AluSx SINE Alu -8 304 21 762 199 107 20 chr1 24437312 24437342 -257756322 + MER58C DNA MER1_type 187 213 -2 565 248 15 0 chr1 24437344 24437481 -257756183 - MIR3 SINE MIR -50 158 20 2454 97 0 0 chr1 24437738 24438036 -257755628 - AluSx SINE Alu -14 298 1 201 245 0 0 chr1 24438058 24438107 -257755557 - MIR SINE MIR -67 141 93 365 80 0 0 chr1 24438211 24438261 -257755403 - AluSg/x SINE Alu -65 237 188 453 19 0 0 chr1 24438261 24438315 -257755349 + (CA)n Simple_repeat Simple_repeat 1 54 0 366 255 156 14 chr1 24438392 24438533 -257755131 + MIR3 SINE MIR 38 198 -10 317 326 30 21 chr1 24438543 24438712 -257754952 + MIR SINE MIR 14 146 -62 22 0 0 0 chr1 24438737 24438759 -257754905 + AT_rich Low_complexity Low_complexity 1 22 0 2016 146 3 0 chr1 24438766 24439061 -257754603 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 24439409 24439431 -257754233 + AT_rich Low_complexity Low_complexity 1 22 0 247 282 51 0 chr1 24439434 24439512 -257754152 + MIR SINE MIR 100 181 -81 2156 113 0 3 chr1 24439637 24439962 -257753702 - AluSq SINE Alu 0 324 1 273 312 18 9 chr1 24439967 24440076 -257753588 - MIR SINE MIR -51 211 102 27 0 0 0 chr1 24440096 24440123 -257753541 + AT_rich Low_complexity Low_complexity 1 27 0 1897 144 27 27 chr1 24440342 24440640 -257753024 + AluJb SINE Alu 1 298 -14 686 240 97 19 chr1 24440647 24440905 -257752759 - L2 LINE L2 -1321 1993 1716 1843 131 61 3 chr1 24440935 24441263 -257752401 - L1MB3 LINE L1 -23 6160 5814 2126 109 39 0 chr1 24441263 24441548 -257752116 + AluSx SINE Alu 1 296 -16 2330 113 7 0 chr1 24444332 24444642 -257749022 - AluSx SINE Alu 0 312 1 635 192 25 123 chr1 24445740 24445834 -257747830 + MER5A DNA MER1_type 1 103 -86 1609 113 35 9 chr1 24445834 24446065 -257747599 + AluSx SINE Alu 55 291 -21 2123 116 3 7 chr1 24446065 24446358 -257747306 + AluY SINE Alu 1 292 -19 635 192 25 123 chr1 24446358 24446465 -257747199 + MER5A DNA MER1_type 101 183 -6 308 28 0 0 chr1 24446497 24446533 -257747131 - U2 snRNA snRNA -152 36 1 392 296 34 55 chr1 24446535 24446870 -257746794 + L2 LINE L2 2686 3023 -249 10191 23 1 209 chr1 24446891 24448641 -257745023 - SVA Other Other 0 1386 1 23 0 0 0 chr1 24448795 24448818 -257744846 + AT_rich Low_complexity Low_complexity 1 23 0 337 240 0 0 chr1 24448904 24448979 -257744685 - MIR SINE MIR -65 197 123 1847 161 35 78 chr1 24449010 24449471 -257744193 + L1MB7 LINE L1 5526 5966 -218 1813 181 10 3 chr1 24449471 24449781 -257743883 + AluJo SINE Alu 1 312 0 2034 63 0 0 chr1 24449788 24450025 -257743639 + AluSx SINE Alu 63 299 -13 1095 160 0 82 chr1 24450027 24450169 -257743495 + L1MB8 LINE L1 4947 5099 -1047 1774 140 7 14 chr1 24450169 24450447 -257743217 - AluJo SINE Alu -1 311 36 1095 160 0 82 chr1 24450447 24450530 -257743134 + L1MB8 LINE L1 5099 5147 -999 2242 91 38 0 chr1 24450530 24450817 -257742847 - AluSc SINE Alu -11 298 1 1095 160 0 82 chr1 24450817 24450872 -257742792 + L1MB8 LINE L1 5147 5205 -941 877 176 0 14 chr1 24450876 24451018 -257742646 - AluJo SINE Alu -172 140 1 549 182 143 26 chr1 24451018 24451172 -257742492 + L1MB8 LINE L1 5908 6079 -99 402 246 203 40 chr1 24451191 24451467 -257742197 + L1M4 LINE L1 3845 4165 -1981 190 273 0 0 chr1 24451527 24451571 -257742093 - L2 LINE L2 -3 3310 3267 2491 65 0 56 chr1 24451683 24452006 -257741658 - AluY SINE Alu -6 305 1 2249 129 0 0 chr1 24452283 24452593 -257741071 - AluSx SINE Alu -2 310 1 196 250 36 0 chr1 24452594 24452650 -257741014 - L2 LINE L2 -13 3300 3243 791 164 22 87 chr1 24452763 24452887 -257740777 - MER5A DNA MER1_type -2 187 77 2517 93 3 0 chr1 24452887 24453199 -257740465 + AluSp SINE Alu 1 313 0 791 164 22 87 chr1 24453199 24453257 -257740407 - MER5A DNA MER1_type -112 77 17 219 231 0 19 chr1 24453307 24453359 -257740305 - L2 LINE L2 -75 3197 3147 1861 157 31 3 chr1 24453428 24453722 -257739942 + AluJb SINE Alu 1 302 -10 388 38 0 0 chr1 24453758 24453811 -257739853 - MADE1 DNA Mariner 0 80 28 598 224 109 12 chr1 24453815 24453980 -257739684 - MIR SINE MIR -79 183 3 1495 113 5 5 chr1 24454218 24454421 -257739243 + AluJb SINE Alu 1 203 -109 306 291 182 0 chr1 24454701 24454811 -257738853 - MIR SINE MIR -60 202 73 243 111 0 0 chr1 24454823 24454859 -257738805 - MER96 DNA MER1_type? -139 36 1 2412 97 3 0 chr1 24455287 24455596 -257738068 - AluSg SINE Alu 0 310 1 2027 150 0 3 chr1 24455598 24455898 -257737766 - AluJo SINE Alu 0 312 14 2070 105 31 14 chr1 24456178 24456464 -257737200 - AluSx SINE Alu -21 291 1 347 315 99 0 chr1 24456595 24456776 -257736888 - MIR SINE MIR -26 236 38 976 161 0 60 chr1 24456805 24456879 -257736785 + MER5A DNA MER1_type 3 80 -109 2319 99 0 10 chr1 24456879 24457182 -257736482 + AluSx SINE Alu 1 300 -12 976 161 0 60 chr1 24457182 24457306 -257736358 + MER5A DNA MER1_type 80 189 0 234 333 67 15 chr1 24457416 24457551 -257736113 - L2 LINE L2 -188 3084 2943 2615 49 0 7 chr1 24457676 24457981 -257735683 - AluY SINE Alu -8 303 1 2197 92 0 55 chr1 24458054 24458381 -257735283 - AluSg1 SINE Alu 0 309 1 623 169 17 102 chr1 24458409 24458586 -257735078 + MLT1D LTR MaLR 5 166 -339 2036 142 0 10 chr1 24458593 24458881 -257734783 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr1 24458883 24458921 -257734743 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1950 150 28 3 chr1 24458925 24459212 -257734452 - AluJb SINE Alu -18 294 1 3059 225 88 51 chr1 24459220 24459600 -257734064 - L2 LINE L2 -245 3068 2704 2111 140 19 7 chr1 24459600 24459908 -257733756 + AluSx SINE Alu 1 312 0 3059 225 88 51 chr1 24459908 24460141 -257733523 - L2 LINE L2 -609 2704 2481 2426 100 0 3 chr1 24460141 24460452 -257733212 + AluSg SINE Alu 1 310 0 3059 225 88 51 chr1 24460452 24461046 -257732618 - L2 LINE L2 -832 2481 1819 692 173 120 0 chr1 24461046 24461179 -257732485 + AluJb SINE Alu 137 285 -27 907 176 0 55 chr1 24461180 24461345 -257732319 - AluJo SINE Alu -66 246 91 3509 118 95 2 chr1 24461530 24462108 -257731556 + MER41B LTR ERV1 3 634 -1 461 291 63 54 chr1 24462448 24462459 -257731205 + MIR SINE MIR 19 28 -234 1700 166 9 69 chr1 24462459 24462601 -257731063 + AluJb SINE Alu 1 150 -162 2329 67 0 14 chr1 24462601 24462908 -257730756 + AluY SINE Alu 4 306 0 1700 166 9 69 chr1 24462908 24463096 -257730568 + AluJb SINE Alu 150 312 0 461 291 63 54 chr1 24463096 24463301 -257730363 + MIR SINE MIR 28 233 -29 198 0 0 0 chr1 24463301 24463323 -257730341 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 478 287 242 29 chr1 24463425 24464052 -257729612 - L2 LINE L2 -219 3053 2231 1125 133 21 11 chr1 24464053 24464241 -257729423 + MLT1D LTR MaLR 1 190 -315 1456 150 0 121 chr1 24464243 24464550 -257729114 + AluJb SINE Alu 33 302 -10 1043 152 47 6 chr1 24464561 24464732 -257728932 + AluJb SINE Alu 132 309 -3 2318 86 30 0 chr1 24464737 24465039 -257728625 + AluSp SINE Alu 1 311 -2 1015 214 87 29 chr1 24465056 24465297 -257728367 + MLT1D LTR MaLR 176 464 -41 1579 69 0 5 chr1 24465297 24465485 -257728179 + AluSx SINE Alu 1 187 -125 1015 214 87 29 chr1 24465485 24465530 -257728134 + MLT1D LTR MaLR 464 505 0 318 315 67 25 chr1 24465550 24465788 -257727876 - L2 LINE L2 -1114 2200 1953 632 202 0 0 chr1 24465788 24465907 -257727757 + FRAM SINE Alu 49 167 -9 2028 155 20 0 chr1 24466020 24466323 -257727341 - AluJb SINE Alu 0 312 4 302 250 90 0 chr1 24466328 24466428 -257727236 - L1ME4a LINE L1 0 6121 6013 189 0 0 0 chr1 24466498 24466519 -257727145 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 255 306 169 31 chr1 24466536 24466696 -257726968 - MIR SINE MIR -78 184 3 371 270 36 0 chr1 24466901 24467012 -257726652 - MIR SINE MIR -79 183 69 257 276 9 38 chr1 24467107 24467212 -257726452 + (CGGGG)n Simple_repeat Simple_repeat 1 102 0 313 261 13 26 chr1 24467421 24467574 -257726090 + G-rich Low_complexity Low_complexity 2 152 0 21 95 0 0 chr1 24467607 24467670 -257725994 + GC_rich Low_complexity Low_complexity 1 63 0 252 233 120 80 chr1 24468858 24468901 -257724763 + MIR SINE MIR 5 45 -217 2587 49 3 13 chr1 24468901 24469209 -257724455 - AluY SINE Alu -6 305 1 252 233 120 80 chr1 24469209 24469315 -257724349 + MIR SINE MIR 45 160 -102 2049 144 0 0 chr1 24469346 24469631 -257724033 - AluSx SINE Alu -21 291 7 528 256 42 42 chr1 24470657 24470848 -257722816 - MIR3 SINE MIR -2 206 16 1906 145 48 3 chr1 24471694 24471984 -257721680 - AluJb SINE Alu -9 303 1 2377 102 0 6 chr1 24473085 24473398 -257720266 - AluY SINE Alu 0 311 1 2401 93 0 0 chr1 24473402 24473693 -257719971 - AluSq SINE Alu -21 292 2 349 290 22 43 chr1 24473862 24474000 -257719664 - L2 LINE L2 -25 3288 3154 832 213 6 0 chr1 24474000 24474164 -257719500 + FRAM SINE Alu 1 165 -1 228 308 11 22 chr1 24474260 24474351 -257719313 + L2 LINE L2 2170 2259 -1055 1049 76 0 0 chr1 24474475 24474606 -257719058 - AluSg/x SINE Alu -5 307 177 1838 111 0 0 chr1 24474606 24474840 -257718824 + AluSx SINE Alu 47 280 -32 195 358 147 0 chr1 24474877 24474986 -257718678 + L2 LINE L2 3148 3272 0 1127 295 139 23 chr1 24475041 24475499 -257718165 - L2 LINE L2 -344 2970 2567 2308 118 0 6 chr1 24475499 24475813 -257717851 - AluSx SINE Alu 0 312 1 1127 295 139 23 chr1 24475813 24475897 -257717767 - L2 LINE L2 -747 2567 2494 1571 185 72 14 chr1 24475897 24476189 -257717475 - AluJo SINE Alu -3 309 1 1127 295 139 23 chr1 24476189 24476334 -257717330 - L2 LINE L2 -820 2494 2202 593 239 168 63 chr1 24476389 24476859 -257716805 - LTR67 LTR ERVL -1 556 6 913 260 63 48 chr1 24476975 24476994 -257716670 - L2 LINE L2 -1099 2215 2198 2332 93 7 3 chr1 24476994 24477304 -257716360 + AluSx SINE Alu 1 311 -1 913 260 63 48 chr1 24477304 24477619 -257716045 - L2 LINE L2 -1116 2198 1876 2159 92 46 0 chr1 24477621 24477902 -257715762 + AluSx SINE Alu 13 306 -6 364 259 65 41 chr1 24478533 24478703 -257714961 + MER5B DNA MER1_type 5 178 0 561 239 112 43 chr1 24478879 24479108 -257714556 + MIR SINE MIR 9 252 -10 675 167 7 43 chr1 24479403 24479541 -257714123 + FLAM_C SINE Alu 1 133 0 204 265 0 0 chr1 24479562 24479611 -257714053 + MER5B DNA MER1_type 2 50 -128 1647 167 48 0 chr1 24479624 24479935 -257713729 - L1MB7 LINE L1 -17 6167 5842 190 205 0 0 chr1 24479979 24480018 -257713646 - MIR SINE MIR -36 226 188 450 291 42 18 chr1 24480142 24480307 -257713357 - MIR SINE MIR -88 174 6 617 336 90 32 chr1 24480358 24480736 -257712928 - L2 LINE L2 0 3272 2873 443 272 58 0 chr1 24481230 24481403 -257712261 - MIR3 SINE MIR 0 208 26 376 273 78 45 chr1 24481663 24481817 -257711847 - MIR3 SINE MIR -27 181 23 605 272 150 5 chr1 24481997 24482210 -257711454 + MIR SINE MIR 7 250 -12 208 258 30 30 chr1 24482422 24482488 -257711176 + L2 LINE L2 2716 2781 -533 316 116 0 0 chr1 24482491 24482534 -257711130 + MIR SINE MIR 15 57 -205 187 43 0 0 chr1 24482545 24482568 -257711096 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1875 141 3 7 chr1 24482568 24482854 -257710810 - AluJo SINE Alu -25 287 1 2018 113 10 13 chr1 24482985 24483286 -257710378 - AluSg1 SINE Alu -9 300 1 348 314 39 20 chr1 24483683 24483836 -257709828 + MIR SINE MIR 35 190 -72 2241 88 0 10 chr1 24483895 24484202 -257709462 - AluSg1 SINE Alu 0 309 6 303 279 58 0 chr1 24484243 24484329 -257709335 + MIR3 SINE MIR 84 174 -34 311 312 50 7 chr1 24484369 24484510 -257709154 + MER117 DNA MER1_type 1 147 -50 1038 96 0 51 chr1 24484510 24484703 -257708961 + AluY SINE Alu 136 320 0 1992 100 18 4 chr1 24484713 24485014 -257708650 + AluSx SINE Alu 1 305 0 527 286 167 38 chr1 24485529 24485816 -257707848 - L3 LINE CR1 -1 1576 1253 302 240 83 115 chr1 24486024 24486075 -257707589 + MIR SINE MIR 20 71 -191 2057 120 6 19 chr1 24486075 24486391 -257707273 + AluSx SINE Alu 1 312 0 302 240 83 115 chr1 24486391 24486556 -257707108 + MIR SINE MIR 71 229 -33 689 300 126 0 chr1 24486725 24486948 -257706716 - MIR SINE MIR -10 252 2 1017 140 105 0 chr1 24486969 24487140 -257706524 - MER5A DNA MER1_type 0 189 1 1719 141 0 99 chr1 24487197 24487390 -257706274 - AluJo SINE Alu 0 302 154 2069 119 0 0 chr1 24487390 24487683 -257705981 + AluSx SINE Alu 1 293 -19 1719 141 0 99 chr1 24487683 24487823 -257705841 - AluJo SINE Alu -148 154 2 195 271 39 78 chr1 24487926 24487999 -257705665 - MIR SINE MIR -50 212 145 2171 81 7 0 chr1 24487999 24488284 -257705380 + AluSg SINE Alu 21 307 -3 195 271 39 78 chr1 24488284 24488339 -257705325 - MIR SINE MIR -117 145 89 314 229 143 19 chr1 24488666 24488771 -257704893 + L2 LINE L2 3155 3272 0 199 338 113 63 chr1 24488941 24489101 -257704563 + L2 LINE L2 3039 3214 -58 1887 95 46 7 chr1 24489101 24489386 -257704278 - AluSc SINE Alu -13 296 1 199 338 113 63 chr1 24489386 24489447 -257704217 + L2 LINE L2 3214 3271 -1 2551 39 0 3 chr1 24489553 24489859 -257703805 + AluY SINE Alu 1 305 -6 1444 205 56 133 chr1 24489894 24490176 -257703488 - MLT1J LTR MaLR -2 509 207 1662 140 32 36 chr1 24490176 24490484 -257703180 - AluJo SINE Alu -1 311 5 1444 205 56 133 chr1 24490484 24490510 -257703154 - MLT1J LTR MaLR -304 207 181 5086 101 54 67 chr1 24490510 24491339 -257702325 - L1MC1 LINE L1 -5 6328 5510 2245 102 0 6 chr1 24491339 24491652 -257702012 - AluSx SINE Alu -1 311 1 5086 101 54 67 chr1 24491652 24491716 -257701948 - L1MC1 LINE L1 -823 5510 5447 1444 205 56 133 chr1 24491716 24491741 -257701923 - MLT1J LTR MaLR -330 181 156 425 173 0 12 chr1 24491741 24491822 -257701842 - L1MA10 LINE L1 -1 6333 6254 1444 205 56 133 chr1 24491822 24492037 -257701627 - MLT1J LTR MaLR -355 156 1 259 204 0 20 chr1 24492583 24492632 -257701032 - L2 LINE L2 -2 3270 3223 2123 104 3 3 chr1 24492684 24492982 -257700682 - AluSx SINE Alu -8 304 7 1498 164 87 3 chr1 24493249 24493536 -257700128 - AluJb SINE Alu -1 311 1 888 140 0 22 chr1 24493542 24493678 -257699986 - FLAM_C SINE Alu 0 133 1 457 274 34 94 chr1 24493910 24494066 -257699598 - MIR SINE MIR -12 250 111 2010 105 18 3 chr1 24494066 24494351 -257699313 + AluSq SINE Alu 3 291 -22 457 274 34 94 chr1 24494351 24494428 -257699236 - MIR SINE MIR -151 111 31 213 295 26 0 chr1 24494680 24494758 -257698906 + MIR SINE MIR 58 137 -71 521 278 61 28 chr1 24495211 24495391 -257698273 - MIR SINE MIR -39 223 38 216 271 0 0 chr1 24496333 24496381 -257697283 + (CCA)n Simple_repeat Simple_repeat 2 49 0 654 246 121 5 chr1 24496582 24496797 -257696867 - MIR SINE MIR -21 241 2 632 267 181 0 chr1 24496914 24497135 -257696529 + MIR SINE MIR 2 262 0 275 26 26 0 chr1 24497138 24497176 -257696488 + MADE1 DNA Mariner 42 80 0 1409 201 10 10 chr1 24497259 24497392 -257696272 + AluJb SINE Alu 1 133 -179 2200 94 7 3 chr1 24497392 24497691 -257695973 + AluSx SINE Alu 2 301 -11 1409 201 10 10 chr1 24497691 24497850 -257695814 + AluJb SINE Alu 132 293 -19 296 280 119 8 chr1 24497909 24498027 -257695637 - L2 LINE L2 -5 3267 3137 197 309 0 0 chr1 24498157 24498212 -257695452 - L2 LINE L2 -213 3059 3005 515 165 17 43 chr1 24498224 24498339 -257695325 - MLT1K LTR MaLR -8 580 469 496 266 26 43 chr1 24499389 24499571 -257694093 - MIR SINE MIR -62 146 18 226 250 36 0 chr1 24499855 24499911 -257693753 + MIR SINE MIR 80 137 -125 457 191 96 59 chr1 24500704 24500840 -257692824 - MIR SINE MIR -72 190 50 295 238 57 9 chr1 24501412 24501517 -257692147 - L1ME4a LINE L1 -182 5939 5830 267 303 67 11 chr1 24502109 24502198 -257691466 - MIR SINE MIR -98 110 17 302 275 88 11 chr1 24502531 24502622 -257691042 + MIR SINE MIR 120 217 -45 225 119 24 24 chr1 24502622 24502664 -257691000 - L2 LINE L2 -5 3308 3267 590 220 150 6 chr1 24502931 24503104 -257690560 + MIR SINE MIR 29 226 -36 800 153 107 149 chr1 24503125 24503406 -257690258 + AluSg1 SINE Alu 21 289 -20 324 294 73 7 chr1 24503423 24503559 -257690105 - MIR SINE MIR 0 262 118 241 263 53 26 chr1 24504224 24504300 -257689364 - MIR SINE MIR -1 261 184 1955 168 63 113 chr1 24504316 24504671 -257688993 - MER44D DNA MER2_type -1882 605 223 2159 117 12 24 chr1 24504671 24505012 -257688652 + MER1B DNA MER1_type 1 337 0 1955 168 63 113 chr1 24505012 24505132 -257688532 - MER44D DNA MER2_type -2264 223 99 2007 123 6 19 chr1 24505132 24505448 -257688216 + AluSx SINE Alu 1 312 0 299 236 106 62 chr1 24505452 24505613 -257688051 + MIR SINE MIR 62 229 -33 689 300 126 0 chr1 24505782 24506005 -257687659 - MIR SINE MIR -10 252 2 1017 140 105 0 chr1 24506026 24506197 -257687467 - MER5A DNA MER1_type 0 189 1 1719 141 0 99 chr1 24506254 24506447 -257687217 - AluJo SINE Alu 0 302 154 2069 119 0 0 chr1 24506447 24506740 -257686924 + AluSx SINE Alu 1 293 -19 1719 141 0 99 chr1 24506740 24506880 -257686784 - AluJo SINE Alu -148 154 2 2057 110 20 0 chr1 24507608 24507909 -257685755 + AluSq SINE Alu 1 307 -6 2061 104 7 0 chr1 24508013 24508310 -257685354 + AluSq SINE Alu 1 299 -14 246 75 0 57 chr1 24508319 24508372 -257685292 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 446 178 40 30 chr1 24508374 24508475 -257685189 - MER69A DNA AcHobo -43 134 33 624 96 0 184 chr1 24508476 24508612 -257685052 - FLAM_C SINE Alu -13 130 20 272 119 24 0 chr1 24508617 24508659 -257685005 - MER69A DNA AcHobo -133 44 2 758 158 96 6 chr1 24508669 24508846 -257684818 - Charlie4 DNA MER1_type -6 1955 1763 2266 93 0 3 chr1 24508851 24509162 -257684502 - AluY SINE Alu -1 310 1 2393 56 0 3 chr1 24509541 24509844 -257683820 - AluY SINE Alu -9 302 1 220 250 0 0 chr1 24509851 24509903 -257683761 - MIR3 SINE MIR -6 202 151 2920 106 2 54 chr1 24509992 24510436 -257683228 + MER1A DNA MER1_type 1 421 -108 2377 14 0 11 chr1 24510462 24510747 -257682917 + AluYa5 SINE Alu 1 282 -29 596 101 0 0 chr1 24510847 24510926 -257682738 - AluS SINE Alu -233 80 2 590 227 84 92 chr1 24510940 24511183 -257682481 - MER21B LTR ERV1 -398 465 176 764 170 0 15 chr1 24511183 24511318 -257682346 - FLAM_C SINE Alu 0 133 1 590 227 84 92 chr1 24511318 24511493 -257682171 - MER21B LTR ERV1 -687 176 1 4207 84 11 6 chr1 24511523 24512072 -257681592 + MER41A LTR ERV1 3 554 0 370 164 0 45 chr1 24512169 24512236 -257681428 - AluSc SINE Alu -10 289 226 725 185 7 7 chr1 24512595 24512730 -257680934 + AluJb SINE Alu 2 136 -176 1591 176 22 26 chr1 24513193 24513506 -257680158 - AluJb SINE Alu 0 312 1 1893 91 16 52 chr1 24513515 24513824 -257679840 - AluSp SINE Alu -15 298 1 1915 136 3 3 chr1 24513830 24514131 -257679533 - AluSg SINE Alu -9 301 1 29 0 0 0 chr1 24515025 24515054 -257678610 + AT_rich Low_complexity Low_complexity 1 29 0 778 268 162 22 chr1 24515092 24515263 -257678401 + L1MC4 LINE L1 7177 7323 -719 1949 137 0 0 chr1 24515263 24515582 -257678082 + AluSx SINE Alu 1 319 0 778 268 162 22 chr1 24515582 24515767 -257677897 + L1MC4 LINE L1 7323 7584 -458 571 207 193 7 chr1 24515808 24515953 -257677711 + MER58B DNA MER1_type 169 340 -1 1648 178 0 3 chr1 24515976 24516274 -257677390 + AluJo SINE Alu 1 297 -15 1771 154 0 13 chr1 24516274 24516573 -257677091 + AluJb SINE Alu 1 295 -17 1202 94 29 6 chr1 24516598 24516769 -257676895 - L1PA11 LINE L1 0 6174 6000 675 155 75 18 chr1 24516880 24517072 -257676592 - MER46C DNA MER2_type -4 334 92 24 0 0 0 chr1 24517513 24517537 -257676127 + AT_rich Low_complexity Low_complexity 1 24 0 252 387 0 21 chr1 24517698 24517791 -257675873 + MIR3 SINE MIR 2 92 -116 474 83 0 0 chr1 24518002 24518062 -257675602 + Alu SINE Alu 2 61 -249 441 0 0 0 chr1 24518072 24518121 -257675543 + (CA)n Simple_repeat Simple_repeat 2 50 0 379 333 40 0 chr1 24518280 24518406 -257675258 - MIR3 SINE MIR -35 173 43 1168 45 0 57 chr1 24518408 24518565 -257675099 + AluY SINE Alu 4 151 -160 1146 206 183 3 chr1 24518665 24518976 -257674688 + L1ME LINE L1 5395 5761 -405 327 299 91 13 chr1 24518971 24519125 -257674539 + L1MC3 LINE L1 6053 6218 -1567 * 2118 102 17 0 chr1 24519129 24519422 -257674242 + AluSx SINE Alu 1 298 -14 3132 140 65 57 chr1 24519605 24519846 -257673818 + L1MB7 LINE L1 5192 5430 -754 2123 119 0 0 chr1 24519846 24520140 -257673524 + AluSq SINE Alu 1 294 -19 3132 140 65 57 chr1 24520140 24520468 -257673196 + L1MB7 LINE L1 5430 5772 -412 1954 126 3 14 chr1 24520468 24520761 -257672903 - AluSx SINE Alu -22 290 1 3132 140 65 57 chr1 24520761 24520963 -257672701 + L1MB7 LINE L1 5772 5971 -213 180 143 54 0 chr1 24521069 24521125 -257672539 + (TA)n Simple_repeat Simple_repeat 2 60 0 1862 140 84 45 chr1 24521401 24521689 -257671975 + Tigger2a DNA MER2_type 2 308 -2400 1574 197 0 7 chr1 24521689 24521979 -257671685 + AluJo SINE Alu 12 299 -13 1862 140 84 45 chr1 24521979 24522046 -257671618 + Tigger2a DNA MER2_type 308 371 -63 871 200 12 0 chr1 24523696 24523856 -257669808 - AluJo/FRAM SINE Alu -4 298 137 1342 85 11 5 chr1 24523859 24524048 -257669616 - AluSp SINE Alu -14 299 110 643 317 93 8 chr1 24524148 24524394 -257669270 + L2 LINE L2 3036 3302 -11 2218 102 0 3 chr1 24525491 24525796 -257667868 - AluSq SINE Alu -8 305 2 285 278 0 14 chr1 24525808 24525880 -257667784 - MIR SINE MIR -15 247 177 464 207 168 50 chr1 24525882 24526061 -257667603 - MIR SINE MIR -6 256 57 1133 397 7 36 chr1 24526148 24526450 -257667214 - AluY SINE Alu -8 293 1 1617 120 112 8 chr1 24526555 24526822 -257666842 - AluSg SINE Alu -13 297 3 2159 110 7 3 chr1 24526831 24527139 -257666525 - AluSg SINE Alu -1 309 1 1406 161 3 93 chr1 24527484 24527689 -257665975 - AluJo SINE Alu -19 293 71 270 0 0 0 chr1 24527689 24527719 -257665945 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1985 114 0 0 chr1 24527719 24527999 -257665665 - AluSx SINE Alu -31 281 2 1406 161 3 93 chr1 24527999 24528114 -257665550 - AluJo SINE Alu -239 73 1 1591 170 10 7 chr1 24528164 24528458 -257665206 - AluJb SINE Alu -17 295 1 340 172 0 23 chr1 24528576 24528651 -257665013 - Alu SINE Alu -250 52 4 291 275 104 44 chr1 24528777 24528959 -257664705 - MARNA DNA Mariner -287 299 107 2243 86 10 0 chr1 24529276 24529578 -257664086 - AluSx SINE Alu -7 305 1 845 122 115 27 chr1 24529866 24530014 -257663650 - AluSq SINE Alu -22 291 131 408 235 115 77 chr1 24530060 24530284 -257663380 - MIR SINE MIR -2 260 40 893 51 0 102 chr1 24530850 24530987 -257662677 + AluY SINE Alu 27 149 -162 11437 15 3 2 chr1 24532180 24533888 -257659776 - L1P1 LINE L1 -608 5547 3839 957 81 22 7 chr1 24533888 24534024 -257659640 - AluSq SINE Alu -175 138 1 1769 232 45 13 chr1 24534024 24534575 -257659089 - L1M4 LINE L1 -3173 2973 2405 410 248 110 28 chr1 24534611 24534756 -257658908 + L1ME2 LINE L1 3325 3481 -2665 942 138 0 0 chr1 24534856 24534994 -257658670 - AluSq SINE Alu -175 138 1 1567 216 35 38 chr1 24534996 24535449 -257658215 + L1ME2 LINE L1 5578 6029 -135 233 180 20 0 chr1 24535500 24535550 -257658114 + LTR66 LTR ERVL 395 445 -165 334 183 0 0 chr1 24535550 24535621 -257658043 + L1ME2 LINE L1 6093 6163 -1 1384 177 51 4 chr1 24535655 24535934 -257657730 + AluJo SINE Alu 17 307 0 2757 107 90 2 chr1 24536220 24536632 -257657032 - MER83 LTR ERV1 0 448 1 2021 118 10 3 chr1 24536641 24536930 -257656734 + MSTC LTR MaLR 138 428 0 837 201 32 123 chr1 24537095 24537190 -257656474 + L1MC5 LINE L1 7072 7174 -787 1829 155 3 3 chr1 24537190 24537480 -257656184 + AluJb SINE Alu 1 290 -22 837 201 32 123 chr1 24537480 24537882 -257655782 + L1MC5 LINE L1 7174 7524 -437 1822 236 86 6 chr1 24537882 24538361 -257655303 + LTR40a LTR ERVL 1 517 -2 332 217 0 0 chr1 24538375 24538435 -257655229 + HERVL40 LTR ERVL 17 76 -5454 1915 175 37 52 chr1 24538466 24538924 -257654740 + MLT1D LTR MaLR 21 471 -34 1880 125 13 10 chr1 24539055 24539360 -257654304 - AluSx SINE Alu -6 306 1 410 231 54 75 chr1 24539365 24539512 -257654152 - MIR3 SINE MIR -62 146 3 241 307 0 27 chr1 24539513 24539588 -257654076 + MIR SINE MIR 34 106 -102 210 71 0 0 chr1 24539656 24539684 -257653980 + (T)n Simple_repeat Simple_repeat 1 28 0 182 36 0 36 chr1 24540043 24540071 -257653593 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1284 195 0 16 chr1 24540086 24540343 -257653321 - AluJb SINE Alu -59 253 1 636 157 0 0 chr1 24540364 24540477 -257653187 - L1ME1 LINE L1 -5 6161 6063 1877 125 10 17 chr1 24541229 24541524 -257652140 - AluSx SINE Alu -19 293 1 486 247 21 10 chr1 24541524 24541669 -257651995 + MIR SINE MIR 102 247 -15 2277 81 0 13 chr1 24541896 24542203 -257651461 - AluY SINE Alu -7 304 2 1494 165 120 0 chr1 24542204 24542470 -257651194 - AluJo SINE Alu -4 298 1 328 302 6 76 chr1 24542580 24542631 -257651033 - MIR SINE MIR -16 246 193 2349 96 3 0 chr1 24542631 24542943 -257650721 - AluSp SINE Alu 0 313 1 328 302 6 76 chr1 24542943 24543063 -257650601 - MIR SINE MIR -69 193 87 2023 87 0 22 chr1 24543219 24543495 -257650169 + AluSg SINE Alu 37 306 -4 2245 97 0 0 chr1 24543712 24544010 -257649654 + AluSx SINE Alu 1 298 -14 498 296 24 0 chr1 24544116 24544241 -257649423 - MIR SINE MIR -132 130 3 195 333 0 43 chr1 24544582 24544651 -257649013 - L2 LINE L2 -15 3298 3233 717 253 164 68 chr1 24544670 24545053 -257648611 - MLT1J1 LTR MaLR -13 433 14 2110 62 0 0 chr1 24545284 24545543 -257648121 + AluSq SINE Alu 39 297 -16 709 185 0 0 chr1 24546272 24546391 -257647273 + FLAM_C SINE Alu 1 119 -14 31 0 0 0 chr1 24546394 24546425 -257647239 + AT_rich Low_complexity Low_complexity 1 31 0 200 214 43 100 chr1 24546725 24546795 -257646869 - MIR3 SINE MIR -13 195 130 1341 186 13 42 chr1 24547041 24547348 -257646316 - AluSx SINE Alu -11 301 4 203 333 26 13 chr1 24547487 24547565 -257646099 - MIR SINE MIR -108 154 76 234 0 0 0 chr1 24547612 24547638 -257646026 + (A)n Simple_repeat Simple_repeat 1 26 0 2349 48 0 3 chr1 24548152 24548447 -257645217 + AluY SINE Alu 1 294 -17 514 251 174 18 chr1 24548510 24548729 -257644935 + MIR SINE MIR 10 262 0 21 0 0 0 chr1 24548733 24548754 -257644910 + AT_rich Low_complexity Low_complexity 1 21 0 1761 81 116 8 chr1 24548755 24549013 -257644651 - AluSg SINE Alu -24 286 1 293 231 15 15 chr1 24549185 24549250 -257644414 + MIR SINE MIR 82 146 -62 848 160 51 0 chr1 24549288 24549444 -257644220 - FRAM SINE Alu -13 163 1 458 263 172 15 chr1 24549707 24549905 -257643759 - MIR SINE MIR -13 249 21 548 263 133 26 chr1 24550794 24550843 -257642821 + L2 LINE L2 1892 1934 -1380 1922 153 0 0 chr1 24550843 24551150 -257642514 - AluJb SINE Alu -5 307 1 548 263 133 26 chr1 24551150 24551439 -257642225 + L2 LINE L2 1934 2266 -1048 329 266 127 66 chr1 24551467 24551726 -257641938 - L2 LINE L2 -41 3272 2998 * 446 200 36 36 chr1 24551711 24551821 -257641843 - L2 LINE L2 -463 2851 2742 216 0 0 0 chr1 24551835 24551859 -257641805 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 1795 157 0 0 chr1 24551860 24552140 -257641524 - AluJb SINE Alu -32 280 1 245 249 176 112 chr1 24552215 24552427 -257641237 - L2 LINE L2 -31 3241 3044 730 197 8 0 chr1 24552427 24552559 -257641105 + FLAM_C SINE Alu 1 133 0 245 249 176 112 chr1 24552559 24552720 -257640944 - L2 LINE L2 -228 3044 2844 1818 99 11 4 chr1 24552782 24553044 -257640620 - AluSc SINE Alu -7 302 39 2053 125 3 3 chr1 24553159 24553456 -257640208 + AluSx SINE Alu 1 297 -15 1516 181 10 20 chr1 24554472 24554775 -257638889 + AluJo SINE Alu 1 300 -12 423 0 0 0 chr1 24554777 24554824 -257638840 + (CATA)n Simple_repeat Simple_repeat 2 48 0 430 214 75 107 chr1 24555176 24555363 -257638301 - MIR SINE MIR -81 181 1 567 217 112 6 chr1 24555797 24555958 -257637706 + MIR3 SINE MIR 16 193 -15 307 237 263 9 chr1 24556022 24556056 -257637608 + MER5A DNA MER1_type 41 65 -124 1894 152 20 0 chr1 24556056 24556353 -257637311 + AluSx SINE Alu 1 303 -9 307 237 263 9 chr1 24556353 24556432 -257637232 + MER5A DNA MER1_type 65 183 -6 223 219 0 0 chr1 24556530 24556571 -257637093 + L2 LINE L2 3225 3265 -7 866 235 55 42 chr1 24556639 24556877 -257636787 + MIR SINE MIR 22 262 0 808 162 162 60 chr1 24557040 24557134 -257636530 - MER33 DNA MER1_type -2261 324 241 2113 97 7 13 chr1 24557134 24557434 -257636230 + AluSx SINE Alu 1 298 -14 808 162 162 60 chr1 24557434 24557623 -257636041 - MER33 DNA MER1_type -2344 241 12 342 202 0 67 chr1 24557632 24557736 -257635928 + MIR SINE MIR 49 145 -117 474 18 0 0 chr1 24558055 24558110 -257635554 + (TG)n Simple_repeat Simple_repeat 2 56 0 287 233 182 4 chr1 24558198 24558327 -257635337 - MIR SINE MIR -61 147 16 810 257 106 18 chr1 24558384 24558610 -257635054 + MIR SINE MIR 16 261 -1 203 360 97 57 chr1 24558589 24558764 -257634900 - L2 LINE L2 -10 3262 3081 * 1125 168 0 0 chr1 24558831 24559004 -257634660 + FAM SINE Alu 1 173 -2 2143 88 17 0 chr1 24559258 24559554 -257634110 - AluSp SINE Alu -12 301 1 2092 119 0 0 chr1 24559582 24559877 -257633787 - AluJb SINE Alu -17 295 1 1475 147 122 4 chr1 24560295 24560574 -257633090 - AluJo SINE Alu 0 312 1 233 215 77 0 chr1 24560759 24560824 -257632840 - MIR SINE MIR -107 155 86 1889 153 0 3 chr1 24560975 24561270 -257632394 - AluJb SINE Alu -9 303 10 2168 97 17 0 chr1 24562124 24562424 -257631240 + AluSc SINE Alu 1 305 -4 22 0 0 0 chr1 24562571 24562593 -257631071 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr1 24563971 24563997 -257629667 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2117 103 7 0 chr1 24565009 24565299 -257628365 - AluSg SINE Alu -17 293 2 1630 147 3 43 chr1 24565398 24565698 -257627966 - AluJo SINE Alu -10 302 15 2140 101 10 0 chr1 24565734 24566032 -257627632 + AluSp SINE Alu 1 301 -12 334 294 121 16 chr1 24566195 24566387 -257627277 - MIR SINE MIR -1 261 51 2082 93 31 0 chr1 24567020 24567310 -257626354 + AluSx SINE Alu 1 299 -13 831 143 8 15 chr1 24567326 24567459 -257626205 + FLAM_C SINE Alu 1 132 -1 817 222 21 16 chr1 24567561 24567750 -257625914 + AluJo SINE Alu 39 228 -84 1726 140 16 32 chr1 24567944 24568252 -257625412 - AluJb SINE Alu -9 303 1 752 245 55 19 chr1 24568414 24568520 -257625144 - MIR SINE MIR 0 262 161 2130 105 0 10 chr1 24568520 24568825 -257624839 - AluSq SINE Alu -11 302 1 752 245 55 19 chr1 24568825 24568937 -257624727 - MIR SINE MIR -101 161 37 2062 84 47 0 chr1 24569093 24569368 -257624296 - AluSc SINE Alu -21 288 1 486 222 194 7 chr1 24569425 24569569 -257624095 + MIR SINE MIR 22 192 -70 1712 139 14 11 chr1 24569577 24569858 -257623806 + AluJb SINE Alu 9 290 -22 2295 60 0 0 chr1 24569869 24570182 -257623482 + AluY SINE Alu 1 313 0 2174 111 0 3 chr1 24570212 24570519 -257623145 + AluSx SINE Alu 1 306 -6 795 103 0 52 chr1 24570555 24570691 -257622973 + FLAM_C SINE Alu 15 143 0 206 273 78 52 chr1 24570691 24570768 -257622896 + MIR SINE MIR 184 262 0 255 251 96 96 chr1 24571133 24571290 -257622374 - MIR SINE MIR -58 150 18 1475 190 18 3 chr1 24571797 24572081 -257621583 + AluJb SINE Alu 21 308 -4 23 0 0 0 chr1 24572081 24572104 -257621560 + AT_rich Low_complexity Low_complexity 1 23 0 2274 65 38 0 chr1 24572667 24572958 -257620706 + AluSc SINE Alu 1 302 -7 192 408 51 25 chr1 24573409 24573566 -257620098 - L2 LINE L2 -2942 372 212 180 291 35 35 chr1 24573720 24573806 -257619858 - MIR SINE MIR -68 140 55 512 355 83 25 chr1 24573913 24574189 -257619475 - L3 LINE CR1 -299 1278 987 373 242 32 0 chr1 24574198 24574293 -257619371 - L2 LINE L2 -23 3290 3193 319 214 54 54 chr1 24574334 24574381 -257619283 - MIR3 SINE MIR -8 200 154 2129 103 3 0 chr1 24574381 24574673 -257618991 - AluSx SINE Alu -19 293 1 319 214 54 54 chr1 24574673 24574737 -257618927 - MIR3 SINE MIR -53 155 89 1419 149 0 0 chr1 24575040 24575261 -257618403 + AluJb SINE Alu 1 221 -91 197 62 0 31 chr1 24575286 24575318 -257618346 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 192 326 35 0 chr1 24575347 24575433 -257618231 + MIR SINE MIR 3 91 -171 223 326 89 48 chr1 24575720 24575989 -257617675 - L2 LINE L2 -364 2950 2665 2074 128 0 0 chr1 24575989 24576293 -257617371 + AluSx SINE Alu 1 304 -8 223 326 89 48 chr1 24576293 24576336 -257617328 - L2 LINE L2 -649 2665 2625 892 114 8 0 chr1 24576722 24576853 -257616811 - AluSq/x SINE Alu -180 132 1 347 292 80 29 chr1 24577096 24577233 -257616431 - MIR SINE MIR -33 229 86 261 0 0 0 chr1 24577249 24577278 -257616386 + (CAA)n Simple_repeat Simple_repeat 2 30 0 586 269 86 25 chr1 24577299 24577496 -257616168 - MIR SINE MIR -26 236 28 236 272 105 70 chr1 24577507 24577545 -257616119 + MIR SINE MIR 112 147 -115 1993 144 0 0 chr1 24577545 24577837 -257615827 + AluJb SINE Alu 1 292 -20 236 272 105 70 chr1 24577837 24577912 -257615752 + MIR SINE MIR 147 229 -33 1288 163 31 56 chr1 24578458 24578778 -257614886 + AluJo SINE Alu 1 312 0 284 271 42 31 chr1 24578909 24579005 -257614659 - MIR3 SINE MIR -105 103 7 484 287 76 92 chr1 24579048 24579575 -257614089 - L2 LINE L2 -46 3226 2688 1995 77 42 11 chr1 24579575 24579861 -257613803 + AluY SINE Alu 1 295 -16 484 287 76 92 chr1 24579861 24579988 -257613676 - L2 LINE L2 -584 2688 2560 2077 98 14 0 chr1 24580065 24580360 -257613304 + AluSq SINE Alu 1 299 -14 1138 216 151 65 chr1 24580386 24580508 -257613156 - MLT1H LTR MaLR -2 547 437 3378 115 12 4 chr1 24580508 24581014 -257612650 - L1PB1 LINE L1 -2 6149 5640 1138 216 151 65 chr1 24581014 24581322 -257612342 - MLT1H LTR MaLR -112 437 80 217 191 24 0 chr1 24581370 24581412 -257612252 + MIR SINE MIR 72 114 -94 220 298 0 0 chr1 24581421 24581478 -257612186 - MIR SINE MIR -87 175 119 2401 48 3 3 chr1 24581481 24581775 -257611889 + AluY SINE Alu 1 294 -17 916 95 8 0 chr1 24581775 24581901 -257611763 - THE1B LTR MaLR -40 324 198 808 148 15 30 chr1 24581907 24582042 -257611622 - FLAM_C SINE Alu -9 134 2 657 207 47 77 chr1 24582043 24582214 -257611450 - L1ME LINE L1 -404 5766 5601 1766 172 10 0 chr1 24582231 24582528 -257611136 - AluJo SINE Alu -12 300 1 1945 94 56 0 chr1 24582707 24582994 -257610670 + AluSx SINE Alu 1 303 -9 286 209 88 22 chr1 24583011 24583102 -257610562 - MIR SINE MIR -59 203 107 1940 132 14 0 chr1 24583513 24583807 -257609857 + AluSx SINE Alu 13 323 0 186 0 40 0 chr1 24583807 24583832 -257609832 + (CAA)n Simple_repeat Simple_repeat 2 180 0 403 239 105 35 chr1 24583844 24584052 -257609612 - MIR SINE MIR 0 262 38 1848 158 3 19 chr1 24584053 24584364 -257609300 + AluJb SINE Alu 1 306 -6 349 240 48 40 chr1 24584736 24584861 -257608803 - MLT1K LTR MaLR -308 280 155 434 181 0 0 chr1 24585235 24585307 -257608357 + AluJ/FLAM SINE Alu 4 75 -237 3393 77 21 10 chr1 24585788 24586268 -257607396 + L1MA1 LINE L1 5660 6144 -158 2421 77 0 0 chr1 24586274 24586561 -257607103 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chr1 24586561 24586585 -257607079 + AT_rich Low_complexity Low_complexity 1 24 0 270 270 20 60 chr1 24586690 24586790 -257606874 + L2 LINE L2 3173 3268 -45 1368 49 71 5 chr1 24587394 24587578 -257606086 - MLT2A2 LTR ERVL 0 453 258 307 197 16 0 chr1 24587679 24587740 -257605924 + MER21B LTR ERV1 369 430 -433 260 309 12 0 chr1 24587781 24587865 -257605799 + MER21B LTR ERV1 25 109 -754 1535 185 130 5 chr1 24587866 24588250 -257605414 + MER21B LTR ERV1 431 862 -1 398 179 0 0 chr1 24588256 24588323 -257605341 - LTR40a LTR ERVL -449 70 4 912 192 53 107 chr1 24588325 24588606 -257605058 - HERVL40 LTR ERVL -3 5527 5262 731 302 71 44 chr1 24588566 24588976 -257604688 - MER89-int LTR ERV1 -298 6503 6083 * 2275 81 32 16 chr1 24589131 24589439 -257604225 + AluSq SINE Alu 1 313 0 1787 237 89 18 chr1 24589584 24590098 -257603566 - MER92C LTR ERV1 -3 551 1 827 329 19 24 chr1 24590386 24590797 -257602867 - MER92C-int LTR ERV1 -248 6553 6145 324 189 54 0 chr1 24590806 24590880 -257602784 - HERVL40 LTR ERVL -1284 4246 4169 235 296 148 9 chr1 24591057 24591165 -257602499 + MIR SINE MIR 28 150 -112 279 0 0 0 chr1 24591300 24591331 -257602333 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2526 143 71 69 chr1 24591736 24592255 -257601409 + MLT2B1 LTR ERVL 1 520 0 219 207 35 0 chr1 24592588 24592604 -257601060 + A-rich Low_complexity Low_complexity 5 19 -45 1913 162 3 10 chr1 24592604 24592918 -257600746 + AluSx SINE Alu 1 312 0 219 207 35 0 chr1 24592918 24592959 -257600705 + A-rich Low_complexity Low_complexity 19 64 0 1884 153 0 10 chr1 24592977 24593144 -257600520 - AluJo SINE Alu -7 305 138 2202 90 38 0 chr1 24593144 24593433 -257600231 + AluSg SINE Alu 9 308 -2 2092 133 0 3 chr1 24593442 24593750 -257599914 + AluSx SINE Alu 1 307 -5 1884 153 0 10 chr1 24593750 24593880 -257599784 - AluJo SINE Alu -182 130 1 696 195 85 14 chr1 24594130 24594311 -257599353 - MIR SINE MIR -28 234 41 189 0 0 0 chr1 24595139 24595160 -257598504 + (TA)n Simple_repeat Simple_repeat 1 21 0 1784 130 10 37 chr1 24595160 24595459 -257598205 - AluJb SINE Alu -21 291 1 2369 109 0 0 chr1 24595491 24595804 -257597860 + AluSq SINE Alu 1 313 0 284 294 56 16 chr1 24595834 24595960 -257597704 - MIR SINE MIR -27 235 105 1153 201 73 7 chr1 24596337 24596611 -257597053 - L1M4 LINE L1 -1239 4907 4616 520 236 175 13 chr1 24596619 24596847 -257596817 + L1M4 LINE L1 2562 2829 -3317 24 0 0 0 chr1 24597024 24597048 -257596616 + AT_rich Low_complexity Low_complexity 1 24 0 2001 163 46 107 chr1 24597427 24597924 -257595740 + MLT1C LTR MaLR 1 467 0 2163 150 18 14 chr1 24597924 24598399 -257595265 + MLT1C-int LTR MaLR 1 590 -781 185 79 0 53 chr1 24599132 24599170 -257594494 + MIR SINE MIR 20 55 -153 1743 166 15 0 chr1 24599258 24599529 -257594135 + AluJo SINE Alu 2 276 -36 4725 104 41 38 chr1 24599532 24600680 -257592984 + MER11A LTR ERVK 1 1266 0 199 109 43 0 chr1 24600694 24600723 -257592941 + (TAA)n Simple_repeat Simple_repeat 2 35 -14 1823 171 0 3 chr1 24600723 24601009 -257592655 + AluSx SINE Alu 1 285 -27 199 109 43 0 chr1 24601009 24601025 -257592639 + (TAA)n Simple_repeat Simple_repeat 35 49 0 598 256 134 0 chr1 24601035 24601207 -257592457 - MIR SINE MIR -48 214 20 249 296 98 23 chr1 24601194 24601326 -257592338 + MIR3 SINE MIR 58 199 -9 * 386 241 131 7 chr1 24601560 24601697 -257591967 + MIR SINE MIR 74 227 -35 276 100 0 0 chr1 24601698 24601738 -257591926 + (CA)n Simple_repeat Simple_repeat 1 40 0 2110 133 3 3 chr1 24601740 24602049 -257591615 + AluSx SINE Alu 1 309 -3 339 25 0 0 chr1 24602467 24602507 -257591157 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 339 260 77 0 chr1 24602512 24602616 -257591048 - L2 LINE L2 -25 3247 3136 599 295 0 30 chr1 24602679 24602879 -257590785 - MIR SINE MIR -21 241 48 366 296 64 61 chr1 24603266 24603739 -257589925 + L2 LINE L2 2711 3183 -89 2716 39 0 0 chr1 24603919 24604229 -257589435 - AluYa8 SINE Alu 0 310 1 486 166 93 58 chr1 24604915 24605003 -257588661 + L1M4 LINE L1 2351 2448 -3698 896 125 0 0 chr1 24605003 24605172 -257588492 + FLAM_C SINE Alu 1 169 0 486 166 93 58 chr1 24605172 24605221 -257588443 + L1M4 LINE L1 2448 2494 -3652 1353 96 6 0 chr1 24605242 24605420 -257588244 + AluY SINE Alu 1 179 -132 1112 158 8 0 chr1 24605520 24608562 -257585102 - ALR/Alpha Satellite centromeric 0 3065 1 1164 156 8 1 chr1 24608578 24622549 -257571115 - ALR/Alpha Satellite centromeric 0 14079 1 1563 110 4 13 chr1 24622549 24622777 -257570887 + AluSg/x SINE Alu 80 305 -4 1415 205 51 63 chr1 24622777 24623107 -257570557 - MLT1D LTR MaLR -95 410 78 504 81 0 92 chr1 24623107 24623194 -257570470 + MADE1 DNA Mariner 2 80 0 1415 205 51 63 chr1 24623194 24623236 -257570428 - MLT1D LTR MaLR -427 78 41 2014 88 80 0 chr1 24623236 24623510 -257570154 + AluSx SINE Alu 1 296 -16 1415 205 51 63 chr1 24623510 24623551 -257570113 - MLT1D LTR MaLR -464 41 1 2273 136 26 38 chr1 24623556 24623599 -257570065 + LTR37A LTR ERV1 3 45 -381 1300 192 72 48 chr1 24623599 24623743 -257569921 + MER58B DNA MER1_type 1 140 -2280 2501 59 0 16 chr1 24623743 24624047 -257569617 + AluY SINE Alu 1 299 -12 1300 192 72 48 chr1 24624047 24624235 -257569429 + MER58B DNA MER1_type 140 341 0 2273 136 26 38 chr1 24624235 24624536 -257569128 + LTR37A LTR ERV1 45 344 -82 1997 96 82 14 chr1 24624536 24624827 -257568837 + AluSq SINE Alu 1 311 -2 2273 136 26 38 chr1 24624827 24624908 -257568756 + LTR37A LTR ERV1 344 424 -2 35 24 0 0 chr1 24625169 24625211 -257568453 + AT_rich Low_complexity Low_complexity 1 42 0 1716 167 0 29 chr1 24625220 24625531 -257568133 + AluJo SINE Alu 1 302 -10 207 288 321 0 chr1 24625540 24625724 -257567940 + MIR SINE MIR 20 262 0 192 233 0 0 chr1 24625828 24625871 -257567793 - MIR SINE MIR -70 192 150 1994 140 3 13 chr1 24625891 24626205 -257567459 + AluJb SINE Alu 1 311 -1 547 346 77 3 chr1 24626220 24626506 -257567158 + L3 LINE CR1 1261 1567 -10 526 195 55 39 chr1 24626796 24626924 -257566740 + MER69A DNA AcHobo 47 176 -1 2324 70 23 13 chr1 24627088 24627387 -257566277 + AluY SINE Alu 1 302 -9 761 148 0 8 chr1 24627390 24627512 -257566152 + AluJb SINE Alu 170 290 -22 829 127 0 0 chr1 24627514 24627624 -257566040 + AluSq/x SINE Alu 1 110 -202 277 135 0 0 chr1 24627637 24627674 -257565990 - 7SLRNA srpRNA srpRNA -220 100 64 2152 121 3 3 chr1 24627844 24628134 -257565530 + AluSx SINE Alu 1 290 -22 1569 168 44 37 chr1 24628591 24628713 -257564951 + AluJo SINE Alu 1 121 -191 243 0 0 0 chr1 24628713 24628740 -257564924 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1529 121 0 5 chr1 24628741 24628956 -257564708 - AluSg/x SINE Alu -13 299 86 1569 168 44 37 chr1 24628956 24629128 -257564536 + AluJo SINE Alu 120 299 -13 216 0 0 0 chr1 24629162 24629186 -257564478 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 275 189 0 0 chr1 24629893 24629946 -257563718 - MER20 DNA MER1_type 0 219 167 597 251 17 46 chr1 24629970 24630145 -257563519 + MER69A DNA AcHobo 1 170 -7 1305 178 111 19 chr1 24630206 24630372 -257563292 - AluJo SINE Alu -17 295 93 1986 78 7 26 chr1 24630372 24630641 -257563023 - AluSc SINE Alu -10 299 36 1305 178 111 19 chr1 24630641 24630744 -257562920 - AluJo SINE Alu -219 93 1 2342 81 0 16 chr1 24630771 24631080 -257562584 - AluY SINE Alu -7 304 1 812 183 0 0 chr1 24631086 24631217 -257562447 - FLAM_C SINE Alu -12 131 1 358 279 27 18 chr1 24631222 24631333 -257562331 + MER103 DNA DNA 52 163 -3 2262 109 3 3 chr1 24631655 24631966 -257561698 + AluSq SINE Alu 1 311 -2 1866 149 3 17 chr1 24632139 24632435 -257561229 - AluJo SINE Alu -20 292 1 441 318 81 0 chr1 24632474 24632622 -257561042 + MIR SINE MIR 21 180 -82 1649 124 0 0 chr1 24632674 24632899 -257560765 + AluSg/x SINE Alu 71 295 -17 25 0 0 0 chr1 24636716 24636741 -257556923 + AT_rich Low_complexity Low_complexity 1 25 0 2089 125 0 0 chr1 24637118 24637421 -257556243 + AluSx SINE Alu 3 305 -7 1488 166 23 23 chr1 24637740 24638042 -257555622 - AluJb SINE Alu -10 302 1 430 91 0 0 chr1 24638137 24638192 -257555472 + AluY SINE Alu 133 187 -124 536 187 119 8 chr1 24639225 24639359 -257554305 + MIR SINE MIR 44 192 -70 552 299 68 70 chr1 24639390 24639981 -257553683 + L2 LINE L2 2584 3251 -21 1924 107 3 14 chr1 24640050 24640341 -257553323 - AluSx SINE Alu -24 288 1 1580 163 0 14 chr1 24640471 24640747 -257552917 - AluJo SINE Alu -39 273 2 724 298 169 50 chr1 24640826 24640853 -257552811 - L2 LINE L2 -6 3307 3285 2262 93 0 0 chr1 24640853 24641152 -257552512 + AluSx SINE Alu 2 300 -12 2078 122 0 6 chr1 24641152 24641464 -257552200 + AluSg SINE Alu 1 310 0 724 298 169 50 chr1 24641153 24641856 -257551808 - L2 LINE L2 -28 3285 2838 249 251 65 129 chr1 24641873 24641983 -257551681 - L2 LINE L2 -973 2341 2225 2137 80 10 23 chr1 24641983 24642285 -257551379 + AluSp SINE Alu 1 298 -15 1611 173 22 26 chr1 24642294 24642607 -257551057 + AluJb SINE Alu 1 312 0 249 251 65 129 chr1 24642607 24642765 -257550899 - L2 LINE L2 -1097 2217 2081 2396 40 0 23 chr1 24642965 24643267 -257550397 - AluY SINE Alu -6 305 11 814 189 34 0 chr1 24643713 24643861 -257549803 - FRAM SINE Alu -23 153 1 809 174 0 34 chr1 24643880 24644029 -257549635 + AluJb SINE Alu 149 292 -20 1061 152 0 0 chr1 24644228 24644399 -257549265 - AluSx SINE Alu -141 171 1 1494 158 75 7 chr1 24644636 24644915 -257548749 - AluJb SINE Alu -14 298 1 302 305 162 25 chr1 24645000 24645197 -257548467 + MIR SINE MIR 31 254 -8 2118 104 3 16 chr1 24645335 24645643 -257548021 + AluSx SINE Alu 1 304 -8 1783 150 28 0 chr1 24645865 24646151 -257547513 - AluSx SINE Alu -6 306 13 923 140 0 0 chr1 24646151 24646287 -257547377 - AluJb SINE Alu -176 136 1 1966 123 0 45 chr1 24646446 24646755 -257546909 - AluSx SINE Alu -17 295 1 1763 151 0 3 chr1 24646845 24647176 -257546488 - AluJb SINE Alu 0 330 1 2234 104 0 0 chr1 24647176 24647474 -257546190 - AluSc SINE Alu -10 299 1 2276 96 0 0 chr1 24647496 24647799 -257545865 - AluSp SINE Alu -4 309 7 2051 111 7 14 chr1 24648020 24648317 -257545347 + AluSx SINE Alu 1 295 -17 1147 202 90 0 chr1 24648357 24648634 -257545030 + Charlie4a DNA MER1_type 17 318 -190 909 156 0 128 chr1 24648643 24648900 -257544764 + AluJb SINE Alu 88 311 -1 2508 44 0 0 chr1 24648904 24649202 -257544462 + AluY SINE Alu 1 298 -13 2237 70 3 25 chr1 24649204 24649520 -257544144 + AluY SINE Alu 1 309 -2 758 158 96 6 chr1 24649525 24649702 -257543962 + Charlie4a DNA MER1_type 310 502 -6 244 143 24 0 chr1 24649712 24649754 -257543910 + MER69A DNA AcHobo 2 44 -133 603 88 0 197 chr1 24649759 24649896 -257543768 + FLAM_C SINE Alu 20 129 -14 423 188 40 30 chr1 24649897 24649998 -257543666 + MER69A DNA AcHobo 33 134 -43 246 75 0 57 chr1 24650000 24650053 -257543611 + (TTTTC)n Simple_repeat Simple_repeat 5 54 0 2061 104 7 0 chr1 24650062 24650359 -257543305 - AluSq SINE Alu -14 299 1 2104 103 20 0 chr1 24650462 24650764 -257542900 - AluSq SINE Alu -5 308 1 347 208 240 10 chr1 24658126 24658222 -257535442 + L2 LINE L2 3192 3309 -4 2012 117 10 0 chr1 24658527 24658818 -257534846 - AluY SINE Alu -17 294 1 723 252 0 0 chr1 24659133 24659280 -257534384 + MIR SINE MIR 116 262 0 959 112 0 96 chr1 24659404 24659591 -257534073 - AluJo/FRAM SINE Alu -7 305 137 1411 75 0 35 chr1 24659594 24659795 -257533869 - AluY SINE Alu -1 310 117 2434 59 0 0 chr1 24659916 24660222 -257533442 + AluY SINE Alu 1 306 -5 514 194 136 0 chr1 24660249 24660352 -257533312 + AluJo/FLAM SINE Alu 1 117 -185 1651 117 8 0 chr1 24660352 24660600 -257533064 + AluSq SINE Alu 36 285 -28 5834 91 42 74 chr1 24660606 24661194 -257532470 - L1MA3 LINE L1 -79 6226 5682 2190 94 3 3 chr1 24661194 24661502 -257532162 - AluSc SINE Alu -1 308 1 5834 91 42 74 chr1 24661502 24661918 -257531746 - L1MA3 LINE L1 -623 5682 5254 662 119 50 0 chr1 24661925 24662026 -257531638 + MLT1D LTR MaLR 400 505 0 399 251 27 9 chr1 24662036 24662162 -257531502 - MER31-int LTR ERV1 -474 5789 4108 1947 114 28 0 chr1 24662169 24662458 -257531206 + AluSx SINE Alu 1 297 -15 1841 152 3 0 chr1 24662629 24662945 -257530719 - AluSx SINE Alu 0 312 1 1760 161 3 3 chr1 24662947 24663245 -257530419 - AluJb SINE Alu -14 298 1 2221 114 6 15 chr1 24663250 24663592 -257530072 - L1PA16 LINE L1 0 6166 5828 1943 119 7 13 chr1 24663592 24663894 -257529770 - AluSx SINE Alu -12 300 1 1115 113 19 0 chr1 24663897 24664057 -257529607 - L1PA16 LINE L1 -390 5776 5614 1486 126 0 5 chr1 24664059 24664273 -257529391 - AluSx SINE Alu -97 215 3 1669 182 43 29 chr1 24664285 24664702 -257528962 - Charlie4a DNA MER1_type -65 443 21 36 19 0 19 chr1 24664773 24664815 -257528849 + AT_rich Low_complexity Low_complexity 1 43 -10 2116 109 0 6 chr1 24664815 24665127 -257528537 - AluSq SINE Alu -3 310 1 36 19 0 19 chr1 24665127 24665138 -257528526 + AT_rich Low_complexity Low_complexity 43 53 0 1912 134 0 23 chr1 24665138 24665307 -257528357 - AluSx SINE Alu -14 298 138 2223 108 0 0 chr1 24665307 24665614 -257528050 - AluSx SINE Alu -5 307 1 1912 134 0 23 chr1 24665614 24665749 -257527915 - AluSx SINE Alu -174 138 1 1293 196 43 63 chr1 24666024 24666196 -257527468 - AluJo SINE Alu -7 295 130 1893 114 0 7 chr1 24666196 24666467 -257527197 - AluSx SINE Alu -22 290 22 1293 196 43 63 chr1 24666467 24666595 -257527069 - AluJo SINE Alu -172 130 1 280 267 117 25 chr1 24666799 24666919 -257526745 - MLT1K LTR MaLR -2 586 456 1061 149 0 28 chr1 24667169 24667399 -257526265 + FRAM SINE Alu 1 225 0 823 179 26 6 chr1 24667407 24667563 -257526101 - LTR53 LTR ERVL -166 353 195 207 316 13 13 chr1 24667863 24667942 -257525722 - L3 LINE CR1 -140 1437 1359 332 109 0 0 chr1 24667997 24668043 -257525621 + MER58 DNA MER1_type 2357 2402 -18 468 200 124 0 chr1 24668109 24668214 -257525450 + MIR SINE MIR 46 163 -99 672 147 6 103 chr1 24668214 24668316 -257525348 + L1MB7 LINE L1 6025 6108 -76 2178 105 3 16 chr1 24668316 24668629 -257525035 - AluSx SINE Alu -3 309 1 672 147 6 103 chr1 24668629 24668682 -257524982 + L1MB7 LINE L1 6108 6165 -19 1099 185 0 18 chr1 24668694 24668921 -257524743 + AluJo SINE Alu 89 311 -1 363 286 0 0 chr1 24668946 24669030 -257524634 + MIR SINE MIR 158 241 -21 192 77 0 0 chr1 24669031 24669057 -257524607 + (CAT)n Simple_repeat Simple_repeat 3 28 0 26 30 0 0 chr1 24669223 24669256 -257524408 + AT_rich Low_complexity Low_complexity 1 33 0 2337 31 0 14 chr1 24669369 24669685 -257523979 + AluY SINE Alu 2 313 0 2334 82 0 0 chr1 24669727 24670031 -257523633 + AluSx SINE Alu 1 304 -8 1178 118 0 17 chr1 24670035 24670213 -257523451 + AluSg/x SINE Alu 125 299 -11 1269 127 47 47 chr1 24670283 24670536 -257523128 + AluY SINE Alu 57 309 -2 889 171 76 0 chr1 24670737 24670895 -257522769 - FAM SINE Alu -5 170 1 21 0 0 0 chr1 24670997 24671018 -257522646 + AT_rich Low_complexity Low_complexity 1 21 0 552 234 94 42 chr1 24671042 24671328 -257522336 + L1MC4a LINE L1 5592 5892 -1916 1512 174 0 11 chr1 24671328 24671592 -257522072 + AluJb SINE Alu 1 261 -51 225 0 0 0 chr1 24671637 24671662 -257522002 + (A)n Simple_repeat Simple_repeat 1 25 0 354 293 76 38 chr1 24671900 24672057 -257521607 + L1MC4a LINE L1 5793 5955 -1853 1637 174 3 7 chr1 24672120 24672403 -257521261 + AluJo SINE Alu 1 284 -28 224 0 65 0 chr1 24672403 24672434 -257521230 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 1637 174 3 7 chr1 24672434 24672460 -257521204 + AluJo SINE Alu 284 309 -3 459 273 42 36 chr1 24673135 24673300 -257520364 + MIR SINE MIR 16 181 -81 309 194 79 33 chr1 24674680 24674796 -257518868 + MIR SINE MIR 20 133 -75 2084 98 10 16 chr1 24674830 24675137 -257518527 + AluSx SINE Alu 2 306 -6 1201 77 0 0 chr1 24675143 24675298 -257518366 + L1PB1 LINE L1 5996 6150 -1 240 262 16 0 chr1 24675345 24675406 -257518258 - MIR SINE MIR -72 136 75 649 177 3 233 chr1 24675896 24676016 -257517648 + MIR SINE MIR 29 49 -213 2239 100 7 0 chr1 24676016 24676325 -257517339 + AluSx SINE Alu 1 311 -1 649 177 3 233 chr1 24676325 24676487 -257517177 + MIR SINE MIR 49 246 -16 243 204 19 19 chr1 24676489 24676543 -257517121 + L2 LINE L2 3180 3233 -80 1732 168 0 14 chr1 24676603 24676900 -257516764 + AluJb SINE Alu 1 293 -19 1788 116 36 4 chr1 24676900 24677204 -257516460 + AluJb SINE Alu 1 314 0 338 350 20 25 chr1 24677340 24677537 -257516127 + L2 LINE L2 3116 3311 -2 957 51 153 0 chr1 24677622 24677759 -257515905 + AluY SINE Alu 136 293 -18 709 199 0 22 chr1 24677768 24677904 -257515760 + FLAM_A SINE Alu 1 133 0 1783 159 3 28 chr1 24677914 24678234 -257515430 + AluJo SINE Alu 1 312 0 228 213 0 93 chr1 24679200 24679275 -257514389 - MIR SINE MIR -12 250 183 558 272 134 5 chr1 24679422 24679624 -257514040 - MIR SINE MIR 0 262 35 941 97 0 84 chr1 24679624 24679692 -257513972 - MLT1A1 LTR MaLR 0 365 315 2044 92 18 11 chr1 24679692 24679999 -257513665 + AluSq SINE Alu 1 309 0 941 97 0 84 chr1 24679999 24680084 -257513580 - MLT1A1 LTR MaLR -50 315 224 964 163 22 22 chr1 24680441 24680625 -257513039 - MLT1A1 LTR MaLR -180 185 2 370 227 9 73 chr1 24680877 24680987 -257512677 + L2 LINE L2 2967 3069 -203 431 308 103 11 chr1 24681000 24681185 -257512479 + MIR SINE MIR 61 262 0 2283 93 0 0 chr1 24682251 24682552 -257511112 + AluSx SINE Alu 1 301 -11 2108 99 7 3 chr1 24682578 24682872 -257510792 + AluSp SINE Alu 1 295 -18 987 253 59 13 chr1 24682951 24683188 -257510476 - MIR SINE MIR -2 260 13 282 311 0 0 chr1 24683452 24683542 -257510122 - MIR SINE MIR -85 123 34 1333 194 155 85 chr1 24683814 24683852 -257509812 + MLT1D LTR MaLR 1 35 -470 1562 143 47 63 chr1 24683852 24684152 -257509512 + AluJo SINE Alu 1 295 -17 1333 194 155 85 chr1 24684152 24684514 -257509150 + MLT1D LTR MaLR 35 370 -135 1905 140 7 0 chr1 24684514 24684799 -257508865 - AluSx SINE Alu -25 287 1 1550 138 16 84 chr1 24684800 24685111 -257508553 - AluJo SINE Alu -21 291 2 1333 194 155 85 chr1 24685111 24685177 -257508487 + MLT1D LTR MaLR 369 503 -2 353 268 52 0 chr1 24685424 24685521 -257508143 - MIR SINE MIR -60 148 47 333 68 0 0 chr1 24685675 24685719 -257507945 + (TC)n Simple_repeat Simple_repeat 2 45 0 2170 132 0 3 chr1 24686148 24686452 -257507212 - AluSx SINE Alu -7 305 3 25 0 0 0 chr1 24686829 24686854 -257506810 + AT_rich Low_complexity Low_complexity 1 25 0 1539 147 0 0 chr1 24690668 24690892 -257502772 - AluSg/x SINE Alu -18 294 71 465 307 84 17 chr1 24690928 24691107 -257502557 - MIR SINE MIR -57 205 15 1906 155 3 10 chr1 24691131 24691428 -257502236 + AluJo SINE Alu 1 295 -17 2236 105 3 3 chr1 24691597 24691912 -257501752 - AluSq SINE Alu 0 315 1 386 220 35 98 chr1 24692233 24692349 -257501315 - MER103 DNA DNA -3 163 41 1848 169 0 45 chr1 24692349 24692486 -257501178 + AluJb SINE Alu 1 143 -169 2434 80 0 10 chr1 24692486 24692798 -257500866 + AluY SINE Alu 1 309 -2 2202 118 0 25 chr1 24692806 24693093 -257500571 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr1 24693093 24693117 -257500547 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2202 118 0 25 chr1 24693117 24693143 -257500521 + AluSx SINE Alu 281 306 -6 1848 169 0 45 chr1 24693143 24693310 -257500354 + AluJb SINE Alu 150 300 -12 386 220 35 98 chr1 24693310 24693366 -257500298 - MER103 DNA DNA -125 41 2 261 280 130 30 chr1 24695089 24695189 -257498475 + L2 LINE L2 3151 3260 -12 27 0 0 0 chr1 24696318 24696345 -257497319 + GC_rich Low_complexity Low_complexity 1 27 0 588 107 0 0 chr1 24697629 24697713 -257495951 + HY4 scRNA scRNA 1 84 -9 375 262 213 6 chr1 24697777 24697960 -257495704 + MIR SINE MIR 2 222 -40 22 0 0 0 chr1 24699127 24699149 -257494515 + AT_rich Low_complexity Low_complexity 1 22 0 475 250 69 66 chr1 24699361 24699681 -257493983 - L2 LINE L2 -122 3150 2830 225 200 254 27 chr1 24700173 24700247 -257493417 + MIR SINE MIR 5 61 -201 2163 106 7 0 chr1 24700247 24700531 -257493133 + AluSg SINE Alu 13 298 -12 225 200 254 27 chr1 24700531 24700566 -257493098 + MIR SINE MIR 61 139 -123 847 149 56 104 chr1 24700568 24700752 -257492912 + L1MB2 LINE L1 5934 6104 -67 1910 155 7 0 chr1 24700752 24701036 -257492628 + AluSx SINE Alu 1 286 -26 847 149 56 104 chr1 24701036 24701100 -257492564 + L1MB2 LINE L1 6104 6170 -1 213 250 170 20 chr1 24701104 24701204 -257492460 + MIR SINE MIR 146 260 -2 * 727 239 32 11 chr1 24701183 24701371 -257492293 - MIR SINE MIR 0 262 71 239 316 60 17 chr1 24701479 24701596 -257492068 - L2 LINE L2 -181 3091 2970 1957 93 102 12 chr1 24701729 24702098 -257491566 + LTR7 LTR ERV1 1 450 0 2561 77 0 0 chr1 24702340 24702651 -257491013 + AluY SINE Alu 1 311 0 1825 138 0 77 chr1 24702848 24702987 -257490677 + AluJo SINE Alu 5 153 -159 1868 136 47 4 chr1 24702987 24703266 -257490398 - AluSx SINE Alu -20 292 2 1825 138 0 77 chr1 24703266 24703452 -257490212 + AluJo SINE Alu 153 305 -7 1694 191 11 3 chr1 24703457 24703740 -257489924 + AluJo SINE Alu 5 289 -23 2248 92 6 44 chr1 24704026 24704342 -257489322 - AluSx SINE Alu -8 304 1 323 252 84 49 chr1 24704526 24704669 -257488995 - L2 LINE L2 -279 2993 2846 2284 81 0 58 chr1 24705138 24705447 -257488217 + AluSg SINE Alu 1 291 -19 1918 111 41 4 chr1 24705457 24705753 -257487911 + AluSx SINE Alu 1 306 0 327 264 122 37 chr1 24705885 24705939 -257487725 + MER5A DNA MER1_type 6 54 -135 2175 145 3 0 chr1 24705939 24706249 -257487415 + AluJo SINE Alu 1 311 -1 327 264 122 37 chr1 24706249 24706359 -257487305 + MER5A DNA MER1_type 54 186 -3 253 246 15 31 chr1 24706540 24706605 -257487059 + MIR SINE MIR 25 88 -120 2430 89 0 10 chr1 24706687 24706990 -257486674 + AluSq SINE Alu 1 300 -13 2088 137 0 3 chr1 24707001 24707315 -257486349 + AluSx SINE Alu 1 313 0 1859 136 0 4 chr1 24707540 24707798 -257485866 + AluSx SINE Alu 1 257 -55 210 26 77 0 chr1 24707803 24707842 -257485822 + A-rich Low_complexity Low_complexity 2 43 0 268 98 0 39 chr1 24708186 24708237 -257485427 - MADE1 DNA Mariner -31 49 1 699 196 15 15 chr1 24708457 24708590 -257485074 - FLAM_A SINE Alu 0 133 1 438 240 262 27 chr1 24708926 24709109 -257484555 + MIR SINE MIR 20 245 -17 695 200 77 82 chr1 24709326 24709426 -257484238 - MIR SINE MIR -11 251 151 2334 79 31 0 chr1 24709426 24709716 -257483948 - AluSp SINE Alu -14 299 1 695 200 77 82 chr1 24709716 24709810 -257483854 - MIR SINE MIR -111 151 58 844 253 39 0 chr1 24709862 24710040 -257483624 + MER91A DNA MER1_type 12 196 0 675 277 97 15 chr1 24710040 24710238 -257483426 - MIR SINE MIR -46 216 2 2603 58 0 3 chr1 24710374 24710684 -257482980 + AluY SINE Alu 1 309 -2 182 269 75 15 chr1 24710725 24710792 -257482872 + MIR SINE MIR 84 154 -108 196 258 275 25 chr1 24710858 24710978 -257482686 - MIR SINE MIR -76 186 37 1406 69 0 6 chr1 24712039 24712213 -257481451 - AluSg/x SINE Alu -9 303 131 180 216 0 0 chr1 24712274 24712311 -257481353 + L2 LINE L2 3019 3055 -217 328 258 67 0 chr1 24712340 24712429 -257481235 - MIR3 SINE MIR -11 197 103 274 267 81 0 chr1 24713311 24713397 -257480267 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24713584 24713908 -257479756 - AluJb SINE Alu -14 298 7 2291 110 0 7 chr1 24713926 24714101 -257479563 - AluSx SINE Alu -4 308 134 2379 85 0 0 chr1 24714101 24714395 -257479269 - AluY SINE Alu -16 295 2 2291 110 0 7 chr1 24714395 24714528 -257479136 - AluSx SINE Alu -178 134 2 2461 88 0 0 chr1 24715576 24715872 -257477792 - AluSc SINE Alu -13 296 1 1741 153 26 42 chr1 24716046 24716359 -257477305 - AluJb SINE Alu -4 308 1 2116 131 7 3 chr1 24716582 24716879 -257476785 + AluSq SINE Alu 1 298 -15 1158 110 6 12 chr1 24716879 24717043 -257476621 + AluSg/x SINE Alu 137 299 -13 651 218 0 98 chr1 24717117 24717291 -257476373 + MER63A DNA MER1_type 54 210 0 2167 119 6 38 chr1 24717563 24717882 -257475782 + AluSx SINE Alu 1 309 -3 317 229 143 19 chr1 24718264 24718369 -257475295 + L2 LINE L2 3155 3272 0 201 338 113 63 chr1 24718539 24718699 -257474965 + L2 LINE L2 3039 3214 -58 2021 95 46 7 chr1 24718699 24718984 -257474680 - AluSc SINE Alu -13 296 1 201 338 113 63 chr1 24718984 24719045 -257474619 + L2 LINE L2 3214 3271 -1 1734 164 4 0 chr1 24719291 24719565 -257474099 + AluJo SINE Alu 1 275 -37 457 111 28 0 chr1 24719586 24719658 -257474006 + AluSp/q SINE Alu 232 305 -8 757 199 192 8 chr1 24719665 24719814 -257473850 + L1MC4 LINE L1 7732 7852 -190 273 98 0 0 chr1 24719814 24719855 -257473809 + (CA)n Simple_repeat Simple_repeat 2 42 0 757 199 192 8 chr1 24719855 24719966 -257473698 + L1MC4 LINE L1 7852 8040 -2 2504 61 0 0 chr1 24719993 24720287 -257473377 - AluY SINE Alu -17 294 1 952 264 137 48 chr1 24720506 24720922 -257472742 - L2 LINE L2 -2 3311 2859 367 254 127 0 chr1 24720932 24721042 -257472622 + L2 LINE L2 2732 2855 -459 2350 95 3 13 chr1 24721109 24721414 -257472250 + AluSx SINE Alu 1 302 -10 213 218 55 36 chr1 24721661 24721716 -257471948 + MIR3 SINE MIR 130 185 -23 194 269 62 106 chr1 24721670 24721878 -257471786 - MIR3 SINE MIR -3 205 7 * 1012 248 67 17 chr1 24722491 24722790 -257470874 - MER21B LTR ERV1 -54 809 496 1190 98 0 23 chr1 24722795 24722968 -257470696 - AluSg/x SINE Alu -14 298 130 274 267 81 0 chr1 24724181 24724267 -257469397 + MIR3 SINE MIR 109 201 -7 1802 127 0 99 chr1 24724454 24724778 -257468886 - AluJb SINE Alu -14 298 7 2302 107 0 7 chr1 24724796 24724971 -257468693 - AluSx SINE Alu -4 308 134 2480 65 0 0 chr1 24724971 24725264 -257468400 - AluY SINE Alu -17 294 2 2302 107 0 7 chr1 24725264 24725397 -257468267 - AluSx SINE Alu -178 134 2 2468 85 0 0 chr1 24726447 24726742 -257466922 - AluSc SINE Alu -14 295 1 850 169 14 27 chr1 24726938 24727086 -257466578 - AluJb SINE Alu -22 290 145 293 163 51 35 chr1 24727192 24727308 -257466356 + (CA)n Simple_repeat Simple_repeat 1 114 -615 3683 106 27 12 chr1 24727308 24727826 -257465838 - MER1A DNA MER1_type 0 527 2 293 163 51 35 chr1 24727826 24727910 -257465754 + (CA)n Simple_repeat Simple_repeat 114 729 0 641 274 59 10 chr1 24728005 24728209 -257465455 + MIR SINE MIR 33 246 -16 327 315 252 0 chr1 24728804 24728947 -257464717 + MIR SINE MIR 82 260 -2 264 282 35 0 chr1 24729036 24729121 -257464543 - MER103 DNA DNA -75 91 4 383 273 61 23 chr1 24729206 24729338 -257464326 - MIR3 SINE MIR -61 147 11 2309 100 0 7 chr1 24730032 24730333 -257463331 + AluSx SINE Alu 1 299 -13 392 298 48 8 chr1 24731057 24731181 -257462483 + MIR SINE MIR 104 232 -30 2199 124 3 10 chr1 24731210 24731516 -257462148 + AluSq SINE Alu 2 305 -8 530 355 11 11 chr1 24731644 24731833 -257461831 + MIR SINE MIR 7 195 -67 191 296 10 61 chr1 24732455 24732553 -257461111 - MIR SINE MIR 0 262 170 688 240 5 62 chr1 24732555 24732763 -257460901 - MIR SINE MIR -31 231 36 403 277 67 0 chr1 24732886 24733005 -257460659 - L2 LINE L2 0 3313 3187 613 254 94 66 chr1 24733017 24733241 -257460423 - MIR SINE MIR -7 255 22 1870 158 3 29 chr1 24733241 24733552 -257460112 - AluJb SINE Alu -5 307 5 613 254 94 66 chr1 24733552 24733571 -257460093 - MIR SINE MIR -240 22 5 435 38 0 0 chr1 24733615 24733668 -257459996 + (TA)n Simple_repeat Simple_repeat 1 53 0 1424 189 115 9 chr1 24733712 24734034 -257459630 - MLT1A2 LTR MaLR -18 356 1 2259 101 0 26 chr1 24734158 24734464 -257459200 - AluSx SINE Alu -14 298 1 1543 158 8 20 chr1 24734742 24734996 -257458668 - AluJo SINE Alu -60 252 2 342 283 121 10 chr1 24735281 24735380 -257458284 - MER91C DNA MER1_type -30 110 1 443 320 23 6 chr1 24736066 24736241 -257457423 + L2 LINE L2 2569 2746 -568 525 110 0 12 chr1 24736244 24736326 -257457338 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24736315 24736504 -257457160 + MER1B DNA MER1_type 151 339 0 658 279 153 46 chr1 24736512 24736547 -257457117 + L2 LINE L2 2750 2780 -533 1972 171 3 0 chr1 24736547 24736857 -257456807 + AluSx SINE Alu 1 311 -1 658 279 153 46 chr1 24736857 24737334 -257456330 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24737746 24737921 -257455743 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24737986 24738134 -257455530 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24738759 24738979 -257454685 + L2 LINE L2 2892 3112 -160 813 264 23 72 chr1 24739083 24739165 -257454499 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24739165 24739452 -257454212 + AluJb SINE Alu 1 288 -24 813 264 23 72 chr1 24739452 24739634 -257454030 + Charlie8 DNA MER1_type 108 275 -2142 2311 96 0 3 chr1 24739804 24740096 -257453568 + AluSc SINE Alu 2 292 -17 348 224 40 104 chr1 24740355 24740562 -257453102 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24740590 24740699 -257452965 - MER117 DNA MER1_type -43 154 31 1970 255 116 24 chr1 24740965 24741108 -257452556 + L2 LINE L2 2077 2205 -1108 1724 125 98 0 chr1 24741108 24741409 -257452255 - AluSx SINE Alu 0 326 1 1970 255 116 24 chr1 24741409 24742326 -257451338 + L2 LINE L2 2205 3311 -2 2353 92 0 52 chr1 24742412 24742764 -257450900 - AluSg SINE Alu 0 335 1 294 270 81 9 chr1 24743233 24743344 -257450320 + L2 LINE L2 2846 2964 -308 1910 141 0 17 chr1 24743561 24743859 -257449805 + AluSx SINE Alu 1 293 -19 757 121 0 64 chr1 24743859 24743999 -257449665 - AluJo/FLAM SINE Alu -170 132 2 2295 84 7 0 chr1 24744175 24744460 -257449204 + AluSg SINE Alu 21 307 -3 290 267 133 9 chr1 24744842 24744947 -257448717 + L2 LINE L2 3155 3272 0 2248 114 0 0 chr1 24745277 24745576 -257448088 - AluSx SINE Alu -13 299 1 649 217 0 103 chr1 24745848 24746023 -257447641 - MER63A DNA MER1_type 0 210 54 2226 113 14 0 chr1 24746097 24746390 -257447274 - AluSg SINE Alu -13 297 1 331 314 39 20 chr1 24746787 24746940 -257446724 + MIR SINE MIR 35 190 -72 2275 117 0 0 chr1 24747187 24747486 -257446178 + AluSx SINE Alu 1 299 -13 2161 126 10 0 chr1 24748190 24748500 -257445164 - AluSq SINE Alu 0 313 1 635 108 189 0 chr1 24748532 24748643 -257445021 - FLAM_C SINE Alu -10 133 2 221 119 24 0 chr1 24748788 24748830 -257444834 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24749601 24749833 -257443831 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24749864 24749936 -257443728 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24749936 24750233 -257443431 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24750233 24750350 -257443314 + L2 LINE L2 3171 3265 -48 296 230 70 30 chr1 24750416 24750516 -257443148 + LTR16C LTR ERVL 113 216 -275 2248 119 7 3 chr1 24750905 24751215 -257442449 + AluSx SINE Alu 1 311 -1 2284 119 0 3 chr1 24751532 24751843 -257441821 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24751933 24752485 -257441179 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24752633 24752656 -257441008 + AT_rich Low_complexity Low_complexity 1 23 0 1111 128 0 0 chr1 24752656 24752805 -257440859 + FRAM SINE Alu 18 166 -10 231 36 0 0 chr1 24753175 24753203 -257440461 + (TC)n Simple_repeat Simple_repeat 1 28 0 7159 64 22 19 chr1 24753204 24754852 -257438812 + SVA Other Other 1 1379 -7 506 252 9 0 chr1 24754867 24754982 -257438682 + MIR SINE MIR 54 169 -93 300 284 25 0 chr1 24755014 24755028 -257438636 + MIR SINE MIR 6 18 -244 2275 120 3 0 chr1 24755028 24755329 -257438335 + AluSx SINE Alu 1 302 -10 300 284 25 0 chr1 24755329 24755395 -257438269 + MIR SINE MIR 18 88 -174 1910 133 0 62 chr1 24755400 24755709 -257437955 + AluJb SINE Alu 1 290 -22 2501 65 0 16 chr1 24755717 24756023 -257437641 + AluY SINE Alu 1 301 -10 624 92 0 0 chr1 24756023 24756110 -257437554 + AluSc SINE Alu 132 218 -91 36 23 0 0 chr1 24756112 24756155 -257437509 + AT_rich Low_complexity Low_complexity 1 43 0 401 233 163 0 chr1 24756161 24756290 -257437374 + MIR SINE MIR 113 262 0 191 203 228 13 chr1 24756762 24756841 -257436823 - MIR3 SINE MIR -12 196 101 439 228 0 0 chr1 24756878 24756970 -257436694 - AluJb SINE Alu -13 299 208 2512 71 0 3 chr1 24757008 24757316 -257436348 + AluY SINE Alu 2 308 -3 707 120 19 0 chr1 24757317 24757425 -257436239 - AluJo/FLAM SINE Alu -201 111 2 940 170 181 6 chr1 24757617 24757788 -257435876 + AluSg/x SINE Alu 84 284 -25 267 31 0 0 chr1 24757791 24757823 -257435841 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1633 176 3 89 chr1 24757980 24758316 -257435348 - AluSq SINE Alu -5 308 2 381 292 71 0 chr1 24758485 24758639 -257435025 - MIR SINE MIR -1 261 97 353 127 0 16 chr1 24758684 24758747 -257434917 - MER69 DNA AcHobo -3 2523 2462 452 66 0 0 chr1 24758761 24758822 -257434842 + Alu SINE Alu 6 66 -252 525 110 0 12 chr1 24758967 24759049 -257434615 + MER1B DNA MER1_type 1 81 -256 * 1277 122 5 5 chr1 24759038 24759227 -257434437 + MER1B DNA MER1_type 151 339 0 665 281 153 46 chr1 24759235 24759270 -257434394 + L2 LINE L2 2750 2780 -533 1997 168 3 0 chr1 24759270 24759580 -257434084 + AluSx SINE Alu 1 311 -1 665 281 153 46 chr1 24759580 24760057 -257433607 + L2 LINE L2 2780 3313 0 693 263 6 11 chr1 24760469 24760644 -257433020 + MIR SINE MIR 18 191 -71 499 264 68 0 chr1 24760709 24760857 -257432807 - MIR SINE MIR -13 249 92 263 364 36 32 chr1 24761482 24761702 -257431962 + L2 LINE L2 2892 3112 -160 827 260 23 72 chr1 24761806 24761888 -257431776 + Charlie8 DNA MER1_type 24 108 -2309 1871 129 31 28 chr1 24761888 24762175 -257431489 + AluJb SINE Alu 1 288 -24 827 260 23 72 chr1 24762175 24762357 -257431307 + Charlie8 DNA MER1_type 108 275 -2142 2328 95 0 3 chr1 24762527 24762821 -257430843 + AluSc SINE Alu 2 294 -15 372 220 40 104 chr1 24763079 24763286 -257430378 - MER20B DNA MER1_type -143 76 4 300 284 138 0 chr1 24763314 24763423 -257430241 - MER117 DNA MER1_type -43 154 31 1986 254 115 24 chr1 24763689 24763832 -257429832 + L2 LINE L2 2077 2206 -1107 1746 121 98 0 chr1 24763832 24764133 -257429531 - AluSx SINE Alu 0 326 1 1986 254 115 24 chr1 24764133 24765051 -257428613 + L2 LINE L2 2206 3311 -2 2457 96 0 3 chr1 24765133 24765473 -257428191 - AluSx SINE Alu 0 312 1 221 119 24 0 chr1 24765615 24765657 -257428007 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 372 323 91 35 chr1 24766428 24766660 -257427004 + L1ME4a LINE L1 5875 6119 -2 364 279 5 100 chr1 24766691 24766763 -257426901 + L2 LINE L2 3094 3171 -142 2250 104 0 14 chr1 24766763 24767060 -257426604 - AluSx SINE Alu -19 293 1 364 279 5 100 chr1 24767060 24767177 -257426487 + L2 LINE L2 3171 3265 -48 295 214 97 29 chr1 24767240 24767343 -257426321 + LTR16C LTR ERVL 107 216 -275 2283 120 7 0 chr1 24767732 24768041 -257425623 + AluSx SINE Alu 1 311 -1 2269 122 0 3 chr1 24768358 24768669 -257424995 - AluSx SINE Alu -2 310 1 3746 71 80 5 chr1 24768759 24769311 -257424353 + LTR61 LTR ERV1 1 593 -2 23 0 0 0 chr1 24769459 24769482 -257424182 + AT_rich Low_complexity Low_complexity 1 23 0 1130 121 0 0 chr1 24769482 24769631 -257424033 + FRAM SINE Alu 18 166 -10 2445 76 0 17 chr1 24769632 24769933 -257423731 + AluSp SINE Alu 1 296 -17 407 226 174 116 chr1 24770289 24770348 -257423316 + L1ME4a LINE L1 5902 5956 -165 1833 148 41 7 chr1 24770348 24770639 -257423025 - AluSx SINE Alu -11 301 1 2245 122 0 0 chr1 24770649 24770945 -257422719 - AluSx SINE Alu -16 296 1 407 226 174 116 chr1 24770945 24771064 -257422600 + L1ME4a LINE L1 5964 6102 -19 469 235 113 67 chr1 24771085 24771195 -257422469 + L1ME4a LINE L1 5873 5976 -145 266 87 22 0 chr1 24771195 24771241 -257422423 + (TA)n Simple_repeat Simple_repeat 1 47 0 469 235 113 67 chr1 24771241 24771283 -257422381 + L1ME4a LINE L1 5976 6015 -106 2101 112 3 21 chr1 24771283 24771601 -257422063 - AluSg SINE Alu 0 313 1 2021 128 4 4 chr1 24771608 24771912 -257421752 - AluSg SINE Alu 0 304 1 469 235 113 67 chr1 24771912 24771986 -257421678 + L1ME4a LINE L1 6020 6121 0 2393 98 3 0 chr1 24772227 24772534 -257421130 - AluSx SINE Alu -4 308 1 299 214 0 83 chr1 24772535 24772619 -257421045 - HAL1 LINE L1 -2426 81 5 350 263 83 0 chr1 24773112 24773206 -257420458 + L1ME4a LINE L1 5964 6074 -47 2540 87 3 0 chr1 24773206 24773517 -257420147 - AluSp SINE Alu -1 312 1 350 263 83 0 chr1 24773517 24773555 -257420109 + L1ME4a LINE L1 6074 6107 -14 2181 127 0 0 chr1 24773702 24774001 -257419663 - AluJb SINE Alu -11 301 3 207 265 20 0 chr1 24774534 24774583 -257419081 + CT-rich Low_complexity Low_complexity 3 52 0 234 189 19 0 chr1 24774705 24774758 -257418906 + (CA)n Simple_repeat Simple_repeat 1 54 0 263 272 68 48 chr1 24775006 24775109 -257418555 - L2 LINE L2 0 3272 3168 2332 100 0 0 chr1 24775534 24775823 -257417841 - AluSx SINE Alu -23 289 1 2236 124 3 0 chr1 24776772 24777071 -257416593 + AluSx SINE Alu 7 306 -6 1739 222 32 53 chr1 24777075 24777465 -257416199 - L1ME1 LINE L1 -5 6161 5783 2084 141 0 7 chr1 24777465 24777755 -257415909 - AluJb SINE Alu -24 288 1 1739 222 32 53 chr1 24777755 24777895 -257415769 - L1ME1 LINE L1 -383 5783 5642 761 215 58 92 chr1 24778351 24778612 -257415052 - MIR SINE MIR -10 252 1 1931 167 49 24 chr1 24778674 24779099 -257414565 + MER63B DNA MER1_type 1 436 0 257 254 32 75 chr1 24779971 24780127 -257413537 - MIR SINE MIR -60 148 3 213 196 65 0 chr1 24780582 24780628 -257413036 - MIR SINE MIR -97 165 117 278 231 41 33 chr1 24781057 24781178 -257412486 + C-rich Low_complexity Low_complexity 4 125 0 21 0 0 0 chr1 24781370 24781391 -257412273 + GC_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr1 24782388 24782436 -257411228 + (TG)n Simple_repeat Simple_repeat 2 49 0 293 233 0 0 chr1 24782573 24782633 -257411031 - MER5A DNA MER1_type -118 71 12 1684 144 14 18 chr1 24782659 24782936 -257410728 - AluJb SINE Alu -14 298 23 2474 67 0 3 chr1 24782942 24783242 -257410422 - AluY SINE Alu -12 299 1 370 208 104 0 chr1 24784020 24784116 -257409548 - L2 LINE L2 -7 3306 3201 1918 139 38 0 chr1 24784398 24784685 -257408979 + AluJo SINE Alu 1 298 -14 428 259 18 9 chr1 24784758 24784870 -257408794 - MIR3 SINE MIR -7 201 89 299 338 41 28 chr1 24784990 24785135 -257408529 + LTR16C LTR ERVL 162 308 -183 859 150 69 19 chr1 24785136 24785296 -257408368 - AluJo SINE Alu -27 285 118 398 215 13 0 chr1 24785297 24785376 -257408288 + LTR16C LTR ERVL 382 461 -30 258 104 39 117 chr1 24785379 24785456 -257408208 - MIR SINE MIR -118 90 20 927 207 53 5 chr1 24785456 24785664 -257408000 - MER20 DNA MER1_type 0 219 2 192 375 52 0 chr1 24786549 24786645 -257407019 + L2 LINE L2 3213 3313 0 372 270 35 26 chr1 24787190 24787305 -257406359 - MIR SINE MIR -60 202 87 186 258 15 61 chr1 24788828 24788894 -257404770 - MIR SINE MIR -68 140 78 2214 109 0 0 chr1 24789215 24789517 -257404147 - AluSx SINE Alu -10 302 1 211 260 77 39 chr1 24789615 24789719 -257403945 + L2 LINE L2 2941 3048 -224 466 257 71 0 chr1 24789789 24789902 -257403762 - L2 LINE L2 -1 3312 3192 469 313 80 36 chr1 24790028 24790252 -257403412 + MIR SINE MIR 17 250 -12 787 262 52 4 chr1 24790947 24791195 -257402469 + MIR SINE MIR 1 260 -2 430 296 47 24 chr1 24791233 24791402 -257402262 - MIR SINE MIR -48 214 42 273 308 15 45 chr1 24791582 24791715 -257401949 + G-rich Low_complexity Low_complexity 1 129 0 1800 165 0 3 chr1 24792242 24792539 -257401125 - AluJb SINE Alu -16 296 1 738 196 143 24 chr1 24792721 24792930 -257400734 - MIR SINE MIR -16 246 13 1889 129 11 0 chr1 24793675 24793962 -257399702 - AluSx SINE Alu -22 290 1 305 266 115 23 chr1 24795504 24795722 -257397942 + L2 LINE L2 2854 3091 -181 181 250 0 0 chr1 24796386 24796430 -257397234 + MIR SINE MIR 110 153 -109 183 200 0 0 chr1 24797007 24797042 -257396622 - L2 LINE L2 -99 3173 3139 1817 146 4 4 chr1 24797304 24797614 -257396050 - AluSx SINE Alu 0 310 1 2258 70 3 0 chr1 24797717 24798002 -257395662 + AluY SINE Alu 1 286 -25 1646 65 5 0 chr1 24798103 24798317 -257395347 + AluY SINE Alu 97 311 0 2385 63 3 3 chr1 24798361 24798662 -257395002 + AluY SINE Alu 1 301 -10 279 226 0 0 chr1 24798824 24798877 -257394787 + MIR SINE MIR 60 112 -150 697 243 151 37 chr1 24799626 24799844 -257393820 + MIR SINE MIR 5 247 -15 232 347 7 40 chr1 24800750 24800900 -257392764 - L2 LINE L2 -448 2866 2722 1765 121 26 18 chr1 24800999 24801272 -257392392 - L1PB4 LINE L1 -5 6151 5877 198 171 0 0 chr1 24801327 24801368 -257392296 + T-rich Low_complexity Low_complexity 1 41 0 1606 103 4 65 chr1 24801368 24801487 -257392177 - AluSq SINE Alu -63 250 154 2022 84 0 81 chr1 24801487 24801810 -257391854 - AluSx SINE Alu -15 297 1 1606 103 4 65 chr1 24801810 24801952 -257391712 - AluSq SINE Alu -159 154 5 289 262 252 0 chr1 24802229 24802336 -257391328 + MIR3 SINE MIR 13 146 -62 322 239 31 33 chr1 24802405 24802503 -257391161 + MIR3 SINE MIR 100 193 -15 1013 130 50 0 chr1 24802577 24802738 -257390926 - MER20 DNA MER1_type -4 215 47 24 0 0 0 chr1 24802751 24802775 -257390889 + AT_rich Low_complexity Low_complexity 1 24 0 1818 155 0 17 chr1 24802994 24803291 -257390373 + AluJb SINE Alu 1 292 -20 314 240 42 49 chr1 24803339 24803477 -257390187 + L1ME LINE L1 5690 5807 -314 1639 144 6 35 chr1 24803477 24803789 -257389875 + AluJo SINE Alu 1 303 -9 314 240 42 49 chr1 24803789 24803801 -257389863 + L1ME LINE L1 5807 5818 -303 537 138 12 0 chr1 24803858 24803938 -257389726 - MER2 DNA MER2_type -264 81 1 222 220 231 11 chr1 24804017 24804108 -257389556 + MIR SINE MIR 41 151 -111 775 130 0 0 chr1 24804110 24804218 -257389446 + Tigger7 DNA MER2_type 3 110 -595 1628 169 10 7 chr1 24804218 24804526 -257389138 - AluSq SINE Alu -4 309 1 1041 149 0 0 chr1 24806521 24806695 -257386969 - AluSg/x SINE Alu -5 307 134 24 53 0 0 chr1 24806864 24806902 -257386762 + AT_rich Low_complexity Low_complexity 1 38 0 905 182 67 6 chr1 24807154 24807319 -257386345 + FAM SINE Alu 1 175 0 570 267 113 10 chr1 24809574 24809769 -257383895 - MIR SINE MIR -30 232 18 1669 166 0 13 chr1 24810527 24810829 -257382835 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24811045 24811148 -257382516 - MER5A DNA MER1_type 0 189 63 2683 152 116 43 chr1 24811158 24811763 -257381901 - L1MB7 LINE L1 0 6184 5536 839 214 46 12 chr1 24813209 24813346 -257380318 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24813346 24813637 -257380027 + AluJo SINE Alu 1 281 -31 839 214 46 12 chr1 24813637 24813928 -257379736 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24814187 24814328 -257379336 + FAM SINE Alu 1 149 -36 2207 71 0 4 chr1 24814331 24814640 -257379024 - AluY SINE Alu 0 308 1 1013 87 0 53 chr1 24814640 24814790 -257378874 - AluSp SINE Alu -19 294 153 182 311 197 45 chr1 24815086 24815291 -257378373 - L2 LINE L2 -1314 2000 1827 886 193 0 0 chr1 24815291 24815441 -257378223 + FRAM SINE Alu 1 150 -16 182 311 197 45 chr1 24815441 24815763 -257377901 - L2 LINE L2 -1487 1827 1393 293 250 102 28 chr1 24815837 24815945 -257377719 + MER46C DNA MER2_type 63 178 -160 307 121 127 0 chr1 24815997 24816079 -257377585 + L1ME3A LINE L1 5825 5919 -251 186 133 0 0 chr1 24816337 24816367 -257377297 + (TG)n Simple_repeat Simple_repeat 2 31 0 274 243 122 0 chr1 24816534 24816608 -257377056 - MIR SINE MIR -73 189 107 1667 171 20 3 chr1 24816940 24817233 -257376431 + AluSx SINE Alu 1 298 -14 2110 86 3 17 chr1 24817776 24818078 -257375586 - AluSc SINE Alu -11 298 1 1632 169 0 13 chr1 24818914 24819216 -257374448 + AluJb SINE Alu 2 299 -13 391 214 233 0 chr1 24819432 24819535 -257374129 - MER5A DNA MER1_type 0 189 63 2701 150 116 43 chr1 24819545 24820150 -257373514 - L1MB7 LINE L1 0 6184 5536 864 199 62 28 chr1 24821596 24821733 -257371931 - MLT1F1 LTR MaLR -8 559 428 1786 127 0 34 chr1 24821733 24822024 -257371640 + AluJo SINE Alu 1 281 -31 864 199 62 28 chr1 24822024 24822315 -257371349 - MLT1F1 LTR MaLR -139 428 3 720 213 57 0 chr1 24822574 24822715 -257370949 + FAM SINE Alu 1 149 -36 2327 81 3 0 chr1 24822717 24823014 -257370650 - AluSx SINE Alu -14 298 1 366 254 127 0 chr1 24823081 24823191 -257370473 - L2 LINE L2 -459 2855 2732 939 264 137 48 chr1 24823201 24823617 -257370047 + L2 LINE L2 2859 3311 -2 2366 61 0 0 chr1 24823836 24824130 -257369534 + AluY SINE Alu 1 294 -17 517 205 105 12 chr1 24824157 24824268 -257369396 - L1MC4 LINE L1 -2 8040 7941 273 98 0 0 chr1 24824268 24824309 -257369355 + (TG)n Simple_repeat Simple_repeat 2 42 0 517 205 105 12 chr1 24824309 24824458 -257369206 - L1MC4 LINE L1 -101 7941 7693 476 97 28 0 chr1 24824465 24824537 -257369127 - AluSp/q SINE Alu -8 305 232 1601 164 4 0 chr1 24824558 24824832 -257368832 - AluJo SINE Alu -37 275 1 348 228 179 24 chr1 24824843 24824966 -257368698 - L1MC4 LINE L1 -314 7728 7587 1018 150 251 8 chr1 24824966 24825213 -257368451 - AluSg1 SINE Alu -2 307 1 859 150 123 0 chr1 24825215 24825437 -257368227 - L1MC4 LINE L1 -749 7293 6976 1701 153 17 11 chr1 24825854 24826141 -257367523 + AluJo SINE Alu 1 289 -23 853 202 109 54 chr1 24826200 24826569 -257367095 + MER31-int LTR ERV1 3650 4107 -829 2182 105 0 0 chr1 24826569 24826864 -257366800 - AluSg SINE Alu -15 295 1 2469 43 0 0 chr1 24826870 24827170 -257366494 - AluYa5 SINE Alu -11 300 1 2920 106 2 54 chr1 24827196 24827640 -257366024 - MER1A DNA MER1_type -108 421 1 220 250 0 0 chr1 24827729 24827781 -257365883 + MIR3 SINE MIR 151 202 -6 2358 56 0 7 chr1 24827788 24828092 -257365572 + AluY SINE Alu 1 302 -9 2392 73 0 0 chr1 24828471 24828772 -257364892 + AluY SINE Alu 1 301 -10 2117 117 0 0 chr1 24828793 24829092 -257364572 + AluSx SINE Alu 1 299 -13 1935 138 6 3 chr1 24829794 24830106 -257363558 - AluSq SINE Alu 0 313 1 635 111 194 0 chr1 24830137 24830245 -257363419 - FLAM_C SINE Alu -10 133 5 2053 105 13 19 chr1 24830272 24830587 -257363077 - AluSq SINE Alu 0 313 1 21 36 0 0 chr1 24830590 24830618 -257363046 + AT_rich Low_complexity Low_complexity 1 28 0 182 171 24 0 chr1 24830835 24830876 -257362788 + CT-rich Low_complexity Low_complexity 2 43 0 1383 118 0 0 chr1 24830883 24831087 -257362577 - AluSg/x SINE Alu -37 275 72 1520 151 9 89 chr1 24831145 24831328 -257362336 - AluJo SINE Alu -1 311 166 1672 89 12 32 chr1 24831328 24831574 -257362090 - AluSp SINE Alu -38 275 35 1520 151 9 89 chr1 24831574 24831728 -257361936 - AluJo SINE Alu -146 166 1 2239 97 0 0 chr1 24832454 24832753 -257360911 - AluSg SINE Alu -11 299 1 1545 187 17 17 chr1 24833077 24833371 -257360293 + AluJb SINE Alu 1 294 -18 1511 205 10 10 chr1 24833864 24834171 -257359493 - AluJo SINE Alu -5 307 1 2045 115 0 0 chr1 24834208 24834520 -257359144 + AluSx SINE Alu 1 312 0 791 295 106 59 chr1 24834590 24834995 -257358669 + L2 LINE L2 2554 2938 -375 776 143 0 30 chr1 24834995 24835128 -257358536 - FLAM_C SINE Alu 0 133 5 791 295 106 59 chr1 24835128 24835289 -257358375 + L2 LINE L2 2938 3090 -223 1835 130 0 7 chr1 24835289 24835596 -257358068 - AluSx SINE Alu 0 311 7 791 295 106 59 chr1 24835596 24835742 -257357922 + L2 LINE L2 3090 3300 -13 2114 114 7 0 chr1 24836208 24836505 -257357159 - AluSq SINE Alu -14 299 1 1402 190 0 46 chr1 24836836 24837141 -257356523 + AluJo SINE Alu 1 291 -21 2428 50 0 0 chr1 24837854 24838152 -257355512 - AluY SINE Alu -13 298 1 25 83 0 0 chr1 24838235 24838295 -257355369 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 24838338 24838359 -257355305 + AT_rich Low_complexity Low_complexity 1 21 0 217 0 0 0 chr1 24838419 24838443 -257355221 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2271 75 0 0 chr1 24838443 24838724 -257354940 - AluY SINE Alu -1 304 1 36 40 0 0 chr1 24838791 24838841 -257354823 + AT_rich Low_complexity Low_complexity 1 50 0 823 180 0 22 chr1 24838841 24838980 -257354684 - AluJb SINE Alu -176 136 1 2348 104 0 0 chr1 24840475 24840772 -257352892 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr1 24840806 24840844 -257352820 + AT_rich Low_complexity Low_complexity 1 38 0 342 363 78 16 chr1 24841638 24841831 -257351833 + L2 LINE L2 294 498 -2816 2348 68 14 0 chr1 24841833 24842126 -257351538 - AluSp SINE Alu -16 297 1 255 274 116 0 chr1 24842173 24842319 -257351345 + MER112 DNA MER1_type 39 201 -59 393 324 80 33 chr1 24842352 24842713 -257350951 + L2 LINE L2 505 882 -2432 1103 324 144 17 chr1 24842817 24843892 -257349772 - L2 LINE L2 0 3313 2107 2171 110 10 0 chr1 24845007 24845308 -257348356 - AluSg SINE Alu -6 304 1 2254 82 7 0 chr1 24845542 24845834 -257347830 - AluY SINE Alu -17 294 1 844 164 21 0 chr1 24846677 24846817 -257346847 - FAM SINE Alu -7 42 1 302 177 25 25 chr1 24847563 24847642 -257346022 - HsTC2 DNA Tc2 -36 1862 1784 2487 87 0 0 chr1 24847701 24848013 -257345651 - AluSx SINE Alu 0 312 1 1402 232 99 22 chr1 24848014 24848510 -257345154 - L1MC4a LINE L1 -1979 5829 5296 200 194 0 0 chr1 24852148 24852184 -257341480 + GA-rich Low_complexity Low_complexity 3 38 0 24 53 0 0 chr1 24853450 24853488 -257340176 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr1 24855638 24855665 -257337999 + AT_rich Low_complexity Low_complexity 1 27 0 266 0 29 0 chr1 24856389 24856423 -257337241 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr1 24858292 24858316 -257335348 + AT_rich Low_complexity Low_complexity 1 24 0 1791 158 3 3 chr1 24859780 24860065 -257333599 + AluJo SINE Alu 9 293 -19 2334 52 0 14 chr1 24860411 24860722 -257332942 - AluY SINE Alu 0 307 1 406 255 248 7 chr1 24861306 24861451 -257332213 - MER5A DNA MER1_type -1 188 9 959 130 338 14 chr1 24861923 24862139 -257331525 + AluSg1 SINE Alu 1 286 -23 213 234 21 0 chr1 24862523 24862570 -257331094 - L2 LINE L2 -18 3295 3248 1651 91 159 29 chr1 24862860 24863136 -257330528 - AluSx SINE Alu 0 312 1 1968 131 7 3 chr1 24863165 24863463 -257330201 + AluSx SINE Alu 1 299 -13 419 262 56 94 chr1 24863723 24863956 -257329708 - MIR SINE MIR -27 235 12 1954 150 7 3 chr1 24864202 24864495 -257329169 + AluJb SINE Alu 1 294 -18 232 189 0 0 chr1 24864553 24864606 -257329058 + FLAM_A SINE Alu 80 132 -1 2020 128 3 0 chr1 24864658 24864947 -257328717 - AluSx SINE Alu -16 296 7 2192 92 7 7 chr1 24865179 24865473 -257328191 - AluSx SINE Alu -15 297 4 2110 146 0 3 chr1 24865548 24865849 -257327815 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr1 24866817 24866845 -257326819 + AT_rich Low_complexity Low_complexity 1 28 0 1647 168 42 25 chr1 24867401 24867687 -257325977 + AluJb SINE Alu 1 291 -21 283 313 212 11 chr1 24867786 24867965 -257325699 - MIR SINE MIR -16 246 32 730 126 0 77 chr1 24867970 24868113 -257325551 - FLAM_C SINE Alu -1 132 1 2299 101 0 10 chr1 24868913 24869220 -257324444 + AluSq SINE Alu 1 304 -9 1923 118 0 81 chr1 24869287 24869610 -257324054 + AluSg SINE Alu 1 297 -13 897 102 0 0 chr1 24869611 24869729 -257323935 + AluSq SINE Alu 133 250 -63 198 171 0 0 chr1 24869729 24869770 -257323894 + A-rich Low_complexity Low_complexity 1 41 0 1707 121 26 18 chr1 24869825 24870098 -257323566 + L1PB4 LINE L1 5877 6151 -5 220 303 65 39 chr1 24870197 24870352 -257323312 + L2 LINE L2 2722 2880 -434 669 243 151 37 chr1 24871252 24871470 -257322194 - MIR SINE MIR -15 247 5 278 226 0 0 chr1 24872219 24872272 -257321392 - MIR SINE MIR -150 112 60 2442 66 3 7 chr1 24872434 24872736 -257320928 - AluY SINE Alu -10 301 1 855 135 7 28 chr1 24872736 24872877 -257320787 - AluSq/x SINE Alu -175 138 1 1906 137 0 7 chr1 24873015 24873299 -257320365 - AluSx SINE Alu -30 282 1 187 259 49 37 chr1 24873914 24873995 -257319669 - L2 LINE L2 0 3272 3191 312 269 90 0 chr1 24874434 24874512 -257319152 - L2 LINE L2 -50 3263 3179 464 188 116 22 chr1 24875636 24875774 -257317890 - MIR SINE MIR -12 250 100 21 0 0 0 chr1 24875984 24876005 -257317659 + AT_rich Low_complexity Low_complexity 1 21 0 257 263 0 0 chr1 24876532 24876589 -257317075 - MIR SINE MIR -2 260 204 293 132 0 38 chr1 24876592 24876645 -257317019 + AluJ/FLAM SINE Alu 14 64 -238 249 191 64 0 chr1 24876700 24876747 -257316917 - MIR SINE MIR -119 143 94 2111 151 0 0 chr1 24879115 24879426 -257314238 - AluSx SINE Alu -1 311 1 1042 141 18 0 chr1 24881427 24881597 -257312067 - AluSc SINE Alu -5 304 132 24 53 0 0 chr1 24881766 24881804 -257311860 + AT_rich Low_complexity Low_complexity 1 38 0 886 174 68 6 chr1 24882056 24882217 -257311447 + FAM SINE Alu 1 171 -4 656 155 0 0 chr1 24935283 24935386 -257258278 + MER46A DNA MER2_type 45 147 -89 2042 115 35 10 chr1 24936007 24936295 -257257369 - AluSg SINE Alu -15 295 1 2425 78 3 0 chr1 24937027 24937320 -257256344 - AluSq SINE Alu -19 294 1 32 75 0 0 chr1 24937324 24937391 -257256273 + AT_rich Low_complexity Low_complexity 1 67 0 2385 59 3 3 chr1 24937401 24937690 -257255974 - AluY SINE Alu -16 295 7 479 253 136 40 chr1 24937738 24937936 -257255728 - MIR SINE MIR -6 256 40 544 214 10 0 chr1 24938546 24938644 -257255020 + MER81 DNA DNA 2 100 -14 396 0 0 0 chr1 24939032 24939076 -257254588 + (CAT)n Simple_repeat Simple_repeat 3 46 0 536 281 68 11 chr1 24939335 24939533 -257254131 - MIR SINE MIR -47 215 8 189 277 32 64 chr1 24939514 24939608 -257254056 + L2 LINE L2 3180 3270 -2 * 273 315 67 0 chr1 24940012 24940101 -257253563 + MIR SINE MIR 50 144 -118 345 329 202 18 chr1 24941484 24941995 -257251669 + L2 LINE L2 1942 2546 -768 247 296 42 0 chr1 24941985 24942056 -257251608 + MIR SINE MIR 31 104 -158 * 230 242 32 16 chr1 24942061 24942123 -257251541 - L3 LINE CR1 -350 1227 1165 2147 146 0 0 chr1 24942213 24942522 -257251142 - AluJb SINE Alu -3 309 1 323 284 91 0 chr1 24942523 24942611 -257251053 + HAL1 LINE L1 2147 2242 -265 2379 49 3 3 chr1 24942704 24942992 -257250672 + AluY SINE Alu 1 288 -23 252 0 0 0 chr1 24942993 24943021 -257250643 + (TA)n Simple_repeat Simple_repeat 1 28 0 718 208 56 19 chr1 24943022 24943238 -257250426 + HAL1 LINE L1 2278 2501 -6 402 288 26 0 chr1 24943252 24943405 -257250259 + L1ME LINE L1 5599 5755 -366 1001 200 0 0 chr1 24943407 24943567 -257250097 + FRAM SINE Alu 1 160 -6 1740 154 85 3 chr1 24943604 24943922 -257249742 + MER7A DNA MER2_type 1 342 -4 1214 84 0 7 chr1 24943995 24944149 -257249515 + AluSx SINE Alu 1 153 -159 2108 135 35 11 chr1 24944191 24944562 -257249102 - L1MB2 LINE L1 -3 6168 5789 193 303 131 86 chr1 24944765 24944909 -257248755 - MIR SINE MIR 0 262 107 2249 77 0 95 chr1 24944909 24945245 -257248419 - AluSq SINE Alu -9 304 1 193 303 131 86 chr1 24945245 24945275 -257248389 - MIR SINE MIR -155 107 80 1962 132 30 7 chr1 24945592 24945896 -257247768 + AluJb SINE Alu 1 311 -1 1034 163 36 50 chr1 24946114 24946335 -257247329 + MER20 DNA MER1_type 2 219 0 1896 153 23 10 chr1 24946384 24946692 -257246972 - AluJb SINE Alu 0 312 1 2253 128 0 0 chr1 24946693 24946997 -257246667 - AluSx SINE Alu -8 304 1 253 266 57 65 chr1 24947188 24947312 -257246352 - MIR SINE MIR -62 146 24 292 287 0 28 chr1 24947723 24947831 -257245833 - MIR SINE MIR 0 262 158 1619 141 15 41 chr1 24948066 24948336 -257245328 - AluJo SINE Alu 0 312 50 2211 129 0 3 chr1 24948356 24948666 -257244998 - AluSg SINE Alu -1 309 1 386 207 60 43 chr1 24948721 24948837 -257244827 - MIR SINE MIR -55 153 36 304 253 11 0 chr1 24949507 24949594 -257244070 + LTR33 LTR ERVL 5 92 -429 250 350 0 0 chr1 24950143 24950283 -257243381 + (TG)n Simple_repeat Simple_repeat 1 140 0 207 0 0 0 chr1 24950397 24950420 -257243244 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2220 124 3 3 chr1 24950659 24950958 -257242706 + AluSx SINE Alu 1 299 -13 1675 182 10 19 chr1 24951822 24952124 -257241540 + AluJo SINE Alu 1 300 -8 459 0 0 0 chr1 24952124 24952175 -257241489 + (CATA)n Simple_repeat Simple_repeat 2 52 0 438 214 75 107 chr1 24952527 24952714 -257240950 - MIR SINE MIR -81 181 1 601 211 112 6 chr1 24953148 24953309 -257240355 + MIR3 SINE MIR 16 193 -15 316 237 263 9 chr1 24953373 24953407 -257240257 + MER5A DNA MER1_type 41 65 -124 2029 155 20 0 chr1 24953407 24953704 -257239960 + AluSx SINE Alu 1 303 -9 316 237 263 9 chr1 24953704 24953783 -257239881 + MER5A DNA MER1_type 65 183 -6 224 219 0 0 chr1 24953881 24953922 -257239742 + L2 LINE L2 3225 3265 -7 870 235 55 42 chr1 24953990 24954228 -257239436 + MIR SINE MIR 22 262 0 765 159 185 51 chr1 24954391 24954485 -257239179 - MER33 DNA MER1_type -2261 324 244 2267 104 7 13 chr1 24954485 24954794 -257238870 + AluSx SINE Alu 1 307 -5 765 159 185 51 chr1 24954794 24954975 -257238689 - MER33 DNA MER1_type -2341 244 12 490 241 43 9 chr1 24954980 24955096 -257238568 + MIR3 SINE MIR 47 166 -42 216 0 0 0 chr1 24955135 24955159 -257238505 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2358 112 3 0 chr1 24955183 24955495 -257238169 - AluSq SINE Alu 0 313 1 1007 128 7 0 chr1 24955496 24955637 -257238027 - AluJo SINE Alu -170 142 1 2302 106 3 7 chr1 24955722 24956025 -257237639 + AluSx SINE Alu 1 302 -10 318 300 56 67 chr1 24956244 24956361 -257237303 - MER5B DNA MER1_type 0 178 62 2116 111 3 36 chr1 24956361 24956668 -257236996 - AluSx SINE Alu -15 297 1 318 300 56 67 chr1 24956668 24956730 -257236934 - MER5B DNA MER1_type -116 62 1 617 253 19 19 chr1 24956730 24956884 -257236780 - MIR3 SINE MIR -48 160 7 518 278 78 95 chr1 24956928 24957455 -257236209 - L2 LINE L2 -46 3226 2688 2252 70 42 3 chr1 24957455 24957739 -257235925 + AluY SINE Alu 1 295 -16 518 278 78 95 chr1 24957739 24957866 -257235798 - L2 LINE L2 -584 2688 2560 2221 98 14 0 chr1 24957943 24958238 -257235426 + AluSq SINE Alu 1 299 -14 1005 216 151 65 chr1 24958264 24958386 -257235278 - MLT1H LTR MaLR -2 547 437 3416 116 10 4 chr1 24958386 24958893 -257234771 - L1PB1 LINE L1 -2 6149 5640 1005 216 151 65 chr1 24958893 24959201 -257234463 - MLT1H LTR MaLR -112 437 80 218 191 24 0 chr1 24959249 24959291 -257234373 + MIR SINE MIR 72 114 -94 217 298 0 0 chr1 24959300 24959357 -257234307 - MIR SINE MIR -87 175 119 2541 48 3 3 chr1 24959360 24959654 -257234010 + AluY SINE Alu 1 294 -17 893 87 8 0 chr1 24959654 24959780 -257233884 - THE1B LTR MaLR -40 324 198 835 147 15 29 chr1 24959786 24959922 -257233742 - FLAM_C SINE Alu -9 134 1 628 255 2 13 chr1 24959922 24960093 -257233571 - L1ME LINE L1 -404 5766 5601 1917 172 10 0 chr1 24960110 24960407 -257233257 - AluJo SINE Alu -12 300 1 2080 94 56 0 chr1 24960586 24960873 -257232791 + AluSx SINE Alu 1 303 -9 287 209 88 22 chr1 24960890 24960981 -257232683 - MIR SINE MIR -59 203 107 2041 131 13 19 chr1 24961392 24961730 -257231934 + AluSx SINE Alu 1 312 0 244 196 0 0 chr1 24961730 24961776 -257231888 - L2 LINE L2 -14 3258 3213 * 391 259 93 20 chr1 24961743 24961931 -257231733 - MIR SINE MIR -21 241 38 1888 158 3 19 chr1 24961932 24962243 -257231421 + AluJb SINE Alu 1 306 -6 312 240 48 40 chr1 24962615 24962740 -257230924 - MLT1K LTR MaLR -308 280 155 737 175 0 0 chr1 24963111 24963255 -257230409 + FLAM_C SINE Alu 1 144 0 366 238 175 48 chr1 24963267 24963456 -257230208 - MIR SINE MIR -42 220 8 456 272 19 0 chr1 24963574 24963677 -257229987 - MIR SINE MIR -63 145 41 2097 142 0 16 chr1 24963781 24964092 -257229572 + AluSx SINE Alu 3 308 -4 1042 178 43 0 chr1 24964175 24964360 -257229304 + AluJo SINE Alu 120 312 0 1838 161 0 7 chr1 24964379 24964658 -257229006 + AluJo SINE Alu 11 287 -25 1465 90 147 19 chr1 24964658 24964869 -257228795 + AluSg SINE Alu 1 238 -72 635 281 58 46 chr1 24964892 24965370 -257228294 - L1ME3 LINE L1 -142 6028 5545 2381 50 40 24 chr1 24965397 24965695 -257227969 - AluY SINE Alu -8 303 1 687 135 0 0 chr1 24965700 24965796 -257227868 - FLAM_A SINE Alu -10 132 37 837 150 8 15 chr1 24965897 24966030 -257227634 - FLAM_C SINE Alu -1 132 1 2215 101 30 0 chr1 24966040 24966336 -257227328 - AluSx SINE Alu -7 305 1 354 294 121 16 chr1 24966969 24967161 -257226503 + MIR SINE MIR 51 261 -1 2288 101 10 0 chr1 24967324 24967622 -257226042 - AluSp SINE Alu -12 301 1 1769 147 3 43 chr1 24967658 24967958 -257225706 + AluJo SINE Alu 15 302 -10 245 246 0 0 chr1 24967979 24968040 -257225624 - MER21B LTR ERV1 -396 467 407 2272 103 7 0 chr1 24968049 24968340 -257225324 + AluSg SINE Alu 1 293 -17 180 77 0 0 chr1 24969353 24969379 -257224285 + (TTA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr1 24970757 24970778 -257222886 + AT_rich Low_complexity Low_complexity 1 21 0 2359 97 10 0 chr1 24970925 24971225 -257222439 - AluSc SINE Alu -6 303 1 272 201 27 196 chr1 24972042 24972079 -257221585 + MIR SINE MIR 3 45 -217 2036 153 0 3 chr1 24972079 24972374 -257221290 + AluJb SINE Alu 10 303 -9 272 201 27 196 chr1 24972374 24972456 -257221208 + MIR SINE MIR 45 139 -123 2431 100 0 0 chr1 24972456 24972767 -257220897 - AluSq SINE Alu -2 311 1 1761 157 64 7 chr1 24972768 24973049 -257220615 - AluJb SINE Alu -15 297 1 272 201 27 196 chr1 24973049 24973110 -257220554 + MIR SINE MIR 138 155 -107 1613 147 122 4 chr1 24973295 24973574 -257220090 + AluJb SINE Alu 1 312 0 2224 122 0 0 chr1 24973992 24974287 -257219377 + AluJb SINE Alu 1 295 -17 2287 88 17 0 chr1 24974315 24974611 -257219053 + AluSp SINE Alu 1 301 -12 1148 168 0 0 chr1 24974865 24975038 -257218626 - FAM SINE Alu -2 173 1 212 360 97 57 chr1 24975105 24975280 -257218384 + L2 LINE L2 3081 3262 -10 * 821 252 106 18 chr1 24975259 24975485 -257218179 - MIR SINE MIR -1 261 16 286 237 182 4 chr1 24975542 24975671 -257217993 + MIR SINE MIR 16 177 -61 330 26 0 0 chr1 24975759 24975798 -257217866 + (CA)n Simple_repeat Simple_repeat 2 40 0 195 290 32 16 chr1 24976239 24976301 -257217363 - MIR3 SINE MIR 0 208 146 497 255 0 0 chr1 24976347 24976453 -257217211 - MIR SINE MIR -96 166 61 1938 171 0 3 chr1 24976453 24976758 -257216906 + AluJb SINE Alu 4 307 -5 2235 93 0 27 chr1 24976875 24977176 -257216488 - AluSc SINE Alu -12 297 5 2279 108 10 3 chr1 24977251 24977558 -257216106 - AluSq SINE Alu -4 309 1 367 76 0 0 chr1 24977633 24977688 -257215976 + Alu SINE Alu 1 48 -253 293 283 40 0 chr1 24977709 24977808 -257215856 - MIR SINE MIR -63 145 49 493 335 98 36 chr1 24977911 24978186 -257215478 - L3 LINE CR1 -299 1278 987 375 242 32 0 chr1 24978195 24978290 -257215374 - L2 LINE L2 -23 3290 3193 312 223 54 54 chr1 24978331 24978378 -257215286 - MIR3 SINE MIR -8 200 154 2258 106 3 0 chr1 24978378 24978670 -257214994 - AluSx SINE Alu -19 293 1 312 223 54 54 chr1 24978670 24978734 -257214930 - MIR3 SINE MIR -53 155 89 1524 149 0 0 chr1 24979037 24979258 -257214406 + AluJb SINE Alu 1 221 -91 197 62 0 31 chr1 24979283 24979315 -257214349 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 186 328 0 0 chr1 24979344 24979408 -257214256 + MIR SINE MIR 3 66 -196 244 326 89 48 chr1 24979717 24979986 -257213678 - L2 LINE L2 -364 2950 2665 2245 125 0 0 chr1 24979986 24980289 -257213375 + AluSx SINE Alu 1 303 -9 244 326 89 48 chr1 24980289 24980332 -257213332 - L2 LINE L2 -649 2665 2625 620 278 28 91 chr1 24980618 24980724 -257212940 + MIR SINE MIR 12 123 -139 2194 129 0 16 chr1 24980724 24981041 -257212623 - AluSx SINE Alu 0 312 1 620 278 28 91 chr1 24981041 24981186 -257212478 + MIR SINE MIR 123 247 -15 2426 84 0 13 chr1 24981413 24981722 -257211942 - AluY SINE Alu -5 306 2 1281 192 120 8 chr1 24981723 24981989 -257211675 - AluSg SINE Alu -14 296 1 320 302 6 76 chr1 24982099 24982150 -257211514 - MIR SINE MIR -16 246 193 2509 96 3 0 chr1 24982150 24982462 -257211202 - AluSp SINE Alu 0 313 1 320 302 6 76 chr1 24982462 24982582 -257211082 - MIR SINE MIR -69 193 87 2185 86 0 21 chr1 24982738 24983018 -257210646 + AluSg SINE Alu 37 310 0 737 266 20 62 chr1 24983192 24983230 -257210434 - MIR SINE MIR -26 236 198 2351 110 3 0 chr1 24983230 24983539 -257210125 + AluSx SINE Alu 1 310 -2 737 266 20 62 chr1 24983539 24983744 -257209920 - MIR SINE MIR -64 198 3 197 333 0 43 chr1 24984085 24984154 -257209510 - L2 LINE L2 -15 3298 3233 596 260 67 70 chr1 24984271 24984556 -257209108 - MLT1J1 LTR MaLR -149 297 14 2160 127 7 0 chr1 24984706 24984997 -257208667 + AluSx SINE Alu 1 293 -19 204 336 9 36 chr1 24985026 24985136 -257208528 + L3 LINE CR1 1397 1503 -74 230 299 60 0 chr1 24985205 24985272 -257208392 - L2 LINE L2 -25 3288 3218 523 356 64 9 chr1 24985296 24985515 -257208149 + MIR SINE MIR 8 238 -24 341 277 72 0 chr1 24985547 24985630 -257208034 + MIR SINE MIR 86 174 -88 21 36 0 0 chr1 24986056 24986084 -257207580 + GC_rich Low_complexity Low_complexity 1 28 0 250 302 44 46 chr1 24986243 24986391 -257207273 - MIR SINE MIR -53 155 4 1987 138 0 32 chr1 24986595 24986906 -257206758 + AluJo SINE Alu 2 302 -10 2329 99 0 10 chr1 24987420 24987722 -257205942 + AluSx SINE Alu 1 299 -13 511 216 0 10 chr1 24987780 24987882 -257205782 + MIR SINE MIR 21 121 -141 290 256 37 0 chr1 24987883 24987965 -257205699 + L2 LINE L2 3024 3108 -164 226 300 67 33 chr1 24988163 24988253 -257205411 - L2 LINE L2 -41 3231 3139 278 299 41 21 chr1 24988429 24988526 -257205138 - MIR SINE MIR -95 167 69 283 269 78 136 chr1 24988581 24988823 -257204841 + MIR SINE MIR 28 255 -7 279 0 0 0 chr1 24988824 24988855 -257204809 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 2548 143 71 69 chr1 24989260 24989779 -257203885 + MLT2B1 LTR ERVL 1 520 0 1955 163 3 10 chr1 24990128 24990488 -257203176 + AluSx SINE Alu 1 358 0 1919 156 0 7 chr1 24990505 24990672 -257202992 - AluJo SINE Alu -7 305 138 2224 90 38 0 chr1 24990672 24990961 -257202703 + AluSg SINE Alu 9 308 -2 2127 133 0 3 chr1 24990970 24991279 -257202385 + AluSx SINE Alu 1 308 -4 1919 156 0 7 chr1 24991279 24991408 -257202256 - AluJo SINE Alu -182 130 1 696 195 85 14 chr1 24991658 24991839 -257201825 - MIR SINE MIR -28 234 41 181 130 0 37 chr1 24992630 24992684 -257200980 + (TA)n Simple_repeat Simple_repeat 1 52 0 1836 126 10 36 chr1 24992684 24992986 -257200678 - AluJb SINE Alu -18 294 1 2369 109 0 0 chr1 24993018 24993331 -257200333 + AluSq SINE Alu 1 313 0 284 294 56 16 chr1 24993361 24993487 -257200177 - MIR SINE MIR -27 235 105 261 0 0 0 chr1 24993784 24993813 -257199851 + (TG)n Simple_repeat Simple_repeat 2 30 0 417 264 18 42 chr1 24994139 24994306 -257199358 - MIR3 SINE MIR -29 179 17 285 221 35 23 chr1 24994329 24994415 -257199249 - MIR SINE MIR -13 249 163 1931 108 61 4 chr1 24994425 24994702 -257198962 - AluJb SINE Alu -13 299 7 219 271 8 34 chr1 24994991 24995109 -257198555 + G-rich Low_complexity Low_complexity 5 119 0 22 99 0 0 chr1 24995424 24995495 -257198169 + GC_rich Low_complexity Low_complexity 1 71 0 49 80 0 0 chr1 24995574 24995686 -257197978 + GC_rich Low_complexity Low_complexity 1 112 0 27 49 0 0 chr1 24995801 24995842 -257197822 + GC_rich Low_complexity Low_complexity 1 41 0 31 58 0 0 chr1 24995855 24995907 -257197757 + GC_rich Low_complexity Low_complexity 1 52 0 413 287 43 55 chr1 24997002 24997107 -257196557 - MIR SINE MIR -6 256 151 2359 82 10 7 chr1 24997107 24997412 -257196252 - AluSx SINE Alu -6 306 1 413 287 43 55 chr1 24997412 24997564 -257196100 - MIR SINE MIR -111 151 3 214 307 0 27 chr1 24997565 24997640 -257196024 + MIR SINE MIR 34 106 -102 210 71 0 0 chr1 24997708 24997736 -257195928 + (T)n Simple_repeat Simple_repeat 1 28 0 182 36 0 36 chr1 24998095 24998123 -257195541 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1380 195 0 16 chr1 24998138 24998395 -257195269 - AluJb SINE Alu -59 253 1 646 157 0 0 chr1 24998416 24998529 -257195135 - L1ME1 LINE L1 -5 6161 6063 2438 59 10 0 chr1 24999281 24999571 -257194093 - AluY SINE Alu -18 293 1 459 130 0 0 chr1 24999759 24999828 -257193836 - U6 snRNA snRNA -34 73 5 377 212 186 0 chr1 24999851 24999964 -257193700 - MIR SINE MIR -84 178 45 1711 153 19 39 chr1 25000209 25000517 -257193147 - AluJo SINE Alu -10 302 1 2334 97 7 0 chr1 25000526 25000825 -257192839 - AluSg SINE Alu -9 301 1 665 168 0 0 chr1 25000974 25001081 -257192583 - U6 snRNA snRNA 0 107 1 1752 62 0 0 chr1 25001136 25001347 -257192317 + AluY SINE Alu 90 300 -11 1087 164 45 81 chr1 25001365 25001675 -257191989 - L1ME3A LINE L1 -5 6165 5867 2269 91 10 16 chr1 25001735 25002043 -257191621 - AluSg SINE Alu -4 306 1 657 147 54 23 chr1 25002169 25002298 -257191366 - FLAM_C SINE Alu -1 142 10 671 329 108 9 chr1 25002330 25002674 -257190990 + L2 LINE L2 2921 3298 -15 2344 102 0 3 chr1 25003776 25004081 -257189583 - AluSq SINE Alu -8 305 2 255 278 0 14 chr1 25004093 25004165 -257189499 - MIR SINE MIR -15 247 177 389 224 168 50 chr1 25004167 25004346 -257189318 - MIR SINE MIR -6 256 57 2486 58 0 3 chr1 25004433 25004726 -257188938 - AluY SINE Alu -19 292 1 1725 120 112 8 chr1 25004831 25005098 -257188566 - AluSg SINE Alu -13 297 3 2294 110 7 3 chr1 25005107 25005416 -257188248 - AluSg SINE Alu 0 310 1 1631 146 3 97 chr1 25005761 25005965 -257187699 - AluJo SINE Alu -21 291 70 270 0 0 0 chr1 25005965 25005995 -257187669 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2109 114 0 0 chr1 25005995 25006275 -257187389 - AluSx SINE Alu -31 281 2 1631 146 3 97 chr1 25006275 25006390 -257187274 - AluJo SINE Alu -240 72 1 1742 171 10 3 chr1 25006440 25006733 -257186931 - AluJb SINE Alu -17 295 1 286 275 104 44 chr1 25006885 25007067 -257186597 - MARNA DNA Mariner -287 299 107 2376 86 10 0 chr1 25007384 25007686 -257185978 - AluSx SINE Alu -7 305 1 903 122 115 27 chr1 25007973 25008121 -257185543 - AluSq SINE Alu -22 291 131 335 238 94 99 chr1 25008192 25008373 -257185291 - MIR SINE MIR -29 233 54 2273 58 0 41 chr1 25008957 25009248 -257184416 + AluY SINE Alu 27 305 -6 1368 158 19 46 chr1 25009248 25009507 -257184157 - AluJo SINE Alu -32 280 29 1744 197 39 6 chr1 25009507 25009863 -257183801 - L1ME1 LINE L1 -66 6100 5733 815 182 134 27 chr1 25009873 25010060 -257183604 - AluSg/x SINE Alu -32 278 72 261 0 0 0 chr1 25010093 25010122 -257183542 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2198 114 10 0 chr1 25010954 25011253 -257182411 + AluSq SINE Alu 1 302 -11 2253 115 3 0 chr1 25011758 25012062 -257181602 - AluSg SINE Alu -5 305 1 454 286 201 5 chr1 25012064 25012263 -257181401 - MIR SINE MIR -5 257 20 2234 112 3 3 chr1 25012441 25012744 -257180920 + AluSx SINE Alu 1 303 -9 2407 65 38 0 chr1 25013800 25014092 -257179572 - AluSc SINE Alu -6 303 1 23 0 0 0 chr1 25014655 25014678 -257178986 + AT_rich Low_complexity Low_complexity 1 23 0 1579 190 18 3 chr1 25014678 25014962 -257178702 - AluJb SINE Alu -4 308 21 216 286 82 71 chr1 25015582 25015680 -257177984 + MIR SINE MIR 52 150 -58 801 110 0 52 chr1 25016147 25016283 -257177381 - FLAM_C SINE Alu 0 143 15 2303 111 0 3 chr1 25016319 25016626 -257177038 - AluSx SINE Alu -6 306 1 2421 60 0 0 chr1 25016656 25016969 -257176695 - AluY SINE Alu 0 313 1 1826 139 14 11 chr1 25016980 25017261 -257176403 - AluJb SINE Alu -22 290 9 436 217 203 7 chr1 25017269 25017412 -257176252 - MIR SINE MIR -70 192 22 2185 84 47 0 chr1 25017469 25017744 -257175920 + AluSc SINE Alu 1 288 -21 667 245 55 19 chr1 25017900 25018012 -257175652 + MIR SINE MIR 37 143 -119 2277 102 0 10 chr1 25018012 25018316 -257175348 + AluSq SINE Alu 1 301 -12 667 245 55 19 chr1 25018316 25018422 -257175242 + MIR SINE MIR 143 262 0 1842 140 16 32 chr1 25018584 25018892 -257174772 + AluJb SINE Alu 1 303 -9 639 293 35 13 chr1 25019827 25020056 -257173608 + MIR SINE MIR 2 235 -27 2023 142 7 0 chr1 25020478 25020780 -257172884 + AluSg SINE Alu 1 304 -6 780 149 0 25 chr1 25020780 25020901 -257172763 - AluJo/FLAM SINE Alu -184 118 1 392 169 0 16 chr1 25020972 25021033 -257172631 - Tigger2a DNA MER2_type -2274 444 373 459 0 0 0 chr1 25021033 25021084 -257172580 + (TG)n Simple_repeat Simple_repeat 2 52 0 1591 179 6 54 chr1 25021491 25021640 -257172024 + AluJo SINE Alu 1 129 -183 2321 84 7 7 chr1 25021640 25021938 -257171726 + AluSp SINE Alu 2 299 -14 1591 179 6 54 chr1 25021938 25022101 -257171563 + AluJo SINE Alu 129 298 -14 1876 140 84 45 chr1 25023751 25023818 -257169846 - Tigger2a DNA MER2_type -2337 371 308 1676 197 0 7 chr1 25023818 25024108 -257169556 - AluJo SINE Alu -13 299 12 1876 140 84 45 chr1 25024108 25024396 -257169268 - Tigger2a DNA MER2_type -2400 308 2 452 139 26 9 chr1 25024672 25024764 -257168900 + (TA)n Simple_repeat Simple_repeat 2 98 -20 2172 117 17 0 chr1 25024764 25025064 -257168600 - AluSx SINE Alu -7 305 1 452 139 26 9 chr1 25025064 25025086 -257168578 + (TA)n Simple_repeat Simple_repeat 98 118 0 336 24 0 0 chr1 25025086 25025127 -257168537 + (CA)n Simple_repeat Simple_repeat 2 42 0 4136 142 60 51 chr1 25025127 25025511 -257168153 - L1MB7 LINE L1 -28 6156 5777 2079 126 3 14 chr1 25025511 25025804 -257167860 + AluSx SINE Alu 1 290 -22 4136 142 60 51 chr1 25025804 25026132 -257167532 - L1MB7 LINE L1 -407 5777 5429 2248 119 0 0 chr1 25026132 25026426 -257167238 - AluSq SINE Alu -19 294 1 4136 142 60 51 chr1 25026426 25026667 -257166997 - L1MB7 LINE L1 -755 5429 5192 339 319 43 21 chr1 25026838 25026850 -257166814 + MIR3 SINE MIR 30 40 -168 2442 52 0 33 chr1 25026850 25027155 -257166509 - AluY SINE Alu -13 298 4 339 319 43 21 chr1 25027155 25027283 -257166381 + MIR3 SINE MIR 40 173 -35 423 0 0 0 chr1 25027442 25027489 -257166175 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 83 0 0 chr1 25027499 25027559 -257166105 - Alu SINE Alu -248 61 2 226 387 0 21 chr1 25027770 25027863 -257165801 - MIR3 SINE MIR -116 92 2 24 0 0 0 chr1 25028024 25028048 -257165616 + AT_rich Low_complexity Low_complexity 1 24 0 681 155 75 18 chr1 25028490 25028682 -257164982 + MER46C DNA MER2_type 92 334 -4 1197 94 29 6 chr1 25028793 25028964 -257164700 + L1PA11 LINE L1 6000 6174 0 1886 154 0 13 chr1 25028989 25029288 -257164376 - AluJb SINE Alu -17 295 1 1758 169 0 10 chr1 25029291 25029586 -257164078 - AluJo SINE Alu -20 292 1 573 207 193 7 chr1 25029609 25029754 -257163910 - MER58B DNA MER1_type -1 340 169 822 267 159 22 chr1 25029795 25029981 -257163683 - L1MC4 LINE L1 -458 7584 7425 2069 137 0 0 chr1 25029981 25030304 -257163360 - AluSx SINE Alu 0 323 1 822 267 159 22 chr1 25030304 25030475 -257163189 - L1MC4 LINE L1 -617 7425 7177 29 0 0 0 chr1 25030513 25030542 -257163122 + AT_rich Low_complexity Low_complexity 1 29 0 281 250 220 53 chr1 25030956 25031256 -257162408 - L1MC4 LINE L1 -3 8039 7690 254 220 0 0 chr1 25031552 25031602 -257162062 + L2 LINE L2 3254 3303 -10 316 182 15 61 chr1 25031733 25031799 -257161865 + AluJo SINE Alu 84 146 -156 2308 99 0 0 chr1 25031799 25032106 -257161558 + AluSx SINE Alu 1 307 0 845 237 82 88 chr1 25032199 25032537 -257161127 - L2 LINE L2 -16 3297 2961 2450 87 0 6 chr1 25032537 25032849 -257160815 - AluSx SINE Alu -2 310 1 845 237 82 88 chr1 25032849 25033007 -257160657 - L2 LINE L2 -352 2961 2804 875 158 0 0 chr1 25033121 25033254 -257160410 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr1 25033854 25033881 -257159783 + AT_rich Low_complexity Low_complexity 1 27 0 2249 100 3 3 chr1 25034186 25034485 -257159179 - AluSp SINE Alu -14 299 1 2448 85 3 0 chr1 25035628 25035934 -257157730 - AluSg SINE Alu -3 307 1 2315 75 0 0 chr1 25035962 25036279 -257157385 + AluY SINE Alu 1 317 0 395 314 112 5 chr1 25036434 25036622 -257157042 + MIR SINE MIR 7 214 -48 403 333 69 11 chr1 25037144 25037333 -257156331 - L2 LINE L2 -15 3298 3099 623 176 9 0 chr1 25037339 25037447 -257156217 - FLAM_C SINE Alu -33 110 2 347 281 16 31 chr1 25037756 25037884 -257155780 + MER5A DNA MER1_type 64 189 0 225 0 0 0 chr1 25037928 25037953 -257155711 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 455 251 126 29 chr1 25039416 25039591 -257154073 + MIR3 SINE MIR 17 208 0 2436 84 0 0 chr1 25040274 25040573 -257153091 - AluSg SINE Alu -11 299 1 237 217 0 72 chr1 25041583 25041652 -257152012 - L2 LINE L2 -2 3311 3248 222 62 0 0 chr1 25041738 25041770 -257151894 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2277 106 0 0 chr1 25041770 25042053 -257151611 - AluSx SINE Alu -27 285 3 1786 160 21 7 chr1 25042067 25042348 -257151316 - AluJb SINE Alu -27 285 1 215 246 105 26 chr1 25042982 25043096 -257150568 + MIR SINE MIR 95 217 -45 1586 150 55 29 chr1 25043128 25043402 -257150262 + AluJo SINE Alu 2 282 -30 1680 192 0 19 chr1 25043547 25043859 -257149805 + AluJb SINE Alu 6 311 -1 316 343 84 0 chr1 25044029 25044172 -257149492 - L2 LINE L2 -16 3256 3102 273 309 0 49 chr1 25044279 25044360 -257149304 - MIR SINE MIR -85 123 47 1053 124 0 0 chr1 25044388 25044533 -257149131 + FRAM SINE Alu 27 171 -5 2008 123 18 4 chr1 25045378 25045655 -257148009 - AluSx SINE Alu -21 291 11 2337 104 0 0 chr1 25045666 25045975 -257147689 - AluSg SINE Alu -1 309 1 22 0 0 0 chr1 25046255 25046277 -257147387 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr1 25046307 25046330 -257147334 + (GA)n Simple_repeat Simple_repeat 1 23 0 295 304 138 28 chr1 25046400 25046581 -257147083 - MIR SINE MIR -37 225 25 345 88 29 15 chr1 25047132 25047200 -257146464 + (TTTTC)n Simple_repeat Simple_repeat 3 71 0 1557 196 35 3 chr1 25047261 25047413 -257146251 - AluJo SINE Alu -18 294 148 1731 154 37 0 chr1 25047413 25047686 -257145978 - AluJo SINE Alu -29 283 1 1557 196 35 3 chr1 25047686 25047818 -257145846 - AluJo SINE Alu -164 148 1 2477 68 0 3 chr1 25047943 25048236 -257145428 + AluSx SINE Alu 1 292 -20 353 320 54 14 chr1 25048877 25049024 -257144640 - MIR3 SINE MIR -39 169 17 2165 225 112 59 chr1 25049684 25049881 -257143783 - L1ME LINE L1 -5084 986 801 2457 86 0 0 chr1 25049881 25050185 -257143479 - AluSc SINE Alu -5 304 1 2165 225 112 59 chr1 25050185 25050341 -257143323 - L1ME LINE L1 -5269 801 655 1720 143 7 55 chr1 25050341 25050672 -257142992 - AluJo SINE Alu 0 319 3 2165 225 112 59 chr1 25050672 25051209 -257142455 - L1ME LINE L1 -5415 655 47 361 241 9 17 chr1 25051278 25051394 -257142270 + MIR3 SINE MIR 72 186 -22 205 143 41 0 chr1 25051957 25052006 -257141658 + (TG)n Simple_repeat Simple_repeat 2 52 0 1621 185 0 34 chr1 25052218 25052516 -257141148 - AluJo SINE Alu -24 288 1 2271 112 0 0 chr1 25052564 25052867 -257140797 - AluSx SINE Alu -9 303 1 534 185 0 0 chr1 25052888 25052980 -257140684 + FLAM_C SINE Alu 37 128 -15 315 71 0 0 chr1 25053119 25053161 -257140503 + (TG)n Simple_repeat Simple_repeat 2 43 0 312 233 150 45 chr1 25053625 25053758 -257139906 + MIR SINE MIR 8 154 -108 289 299 126 31 chr1 25053861 25053946 -257139718 + MIR3 SINE MIR 58 160 -48 1916 147 39 25 chr1 25053946 25054301 -257139363 - MER46B DNA MER2_type -1 235 1 289 299 126 31 chr1 25054301 25054342 -257139322 + MIR3 SINE MIR 160 196 -12 491 246 194 0 chr1 25054983 25055158 -257138506 - MIR SINE MIR -3 259 51 1813 147 32 3 chr1 25055165 25055450 -257138214 - AluJo SINE Alu -11 301 9 2136 101 0 33 chr1 25055960 25056266 -257137398 - AluSx SINE Alu -16 296 1 1384 208 66 65 chr1 25056360 25057109 -257136555 - L2 LINE L2 -57 3256 2525 1957 146 0 22 chr1 25057145 25057460 -257136204 - AluJb SINE Alu 0 312 5 267 302 198 0 chr1 25057526 25057652 -257136012 + L3 LINE CR1 230 380 -1197 190 331 196 20 chr1 25057929 25058077 -257135587 + L3 LINE CR1 522 695 -882 23 0 0 0 chr1 25058152 25058175 -257135489 + AT_rich Low_complexity Low_complexity 1 23 0 568 261 206 10 chr1 25058191 25058390 -257135274 - MIR SINE MIR -23 239 2 226 287 9 46 chr1 25058424 25058532 -257135132 + L3 LINE CR1 899 1002 -575 247 242 95 21 chr1 25058559 25058654 -257135010 + L2 LINE L2 2544 2645 -669 287 333 0 12 chr1 25058966 25059050 -257134614 - L3 LINE CR1 -469 1108 1026 266 307 110 16 chr1 25059050 25059177 -257134487 - L2 LINE L2 0 3272 3134 2205 115 3 16 chr1 25059301 25059614 -257134050 + AluSx SINE Alu 1 309 -3 959 68 8 0 chr1 25059843 25059975 -257133689 + (TCCC)n Simple_repeat Simple_repeat 1 133 0 394 228 83 62 chr1 25059979 25060172 -257133492 - L2 LINE L2 -12 3301 3105 638 237 79 28 chr1 25060179 25060356 -257133308 + L3 LINE CR1 1390 1575 -2 1483 154 43 53 chr1 25060540 25060839 -257132825 + AluJo SINE Alu 1 296 -16 295 68 102 0 chr1 25060839 25060898 -257132766 + (AAATG)n Simple_repeat Simple_repeat 3 67 0 690 186 0 0 chr1 25060988 25061106 -257132558 - FLAM_C SINE Alu -24 119 2 594 263 0 26 chr1 25061106 25061262 -257132402 + MER58A DNA MER1_type 40 191 -33 277 255 75 9 chr1 25061714 25061820 -257131844 - L2 LINE L2 -163 3150 3038 226 322 0 0 chr1 25061887 25061946 -257131718 + L2 LINE L2 3214 3272 0 203 301 123 0 chr1 25062336 25062409 -257131255 + MIR SINE MIR 20 101 -161 232 276 0 17 chr1 25063583 25063641 -257130023 - L2 LINE L2 -27 3245 3189 237 282 96 19 chr1 25063829 25063985 -257129679 - L2 LINE L2 -424 2890 2723 341 280 11 0 chr1 25064311 25064404 -257129260 - L1MB7 LINE L1 -9 6175 6082 1439 283 111 33 chr1 25065087 25065756 -257127908 + L2 LINE L2 531 1251 -2063 866 215 22 154 chr1 25065760 25065935 -257127729 + L2 LINE L2 2319 2411 -903 1363 181 75 43 chr1 25065935 25066216 -257127448 - AluJo SINE Alu -22 290 1 866 215 22 154 chr1 25066216 25066450 -257127214 + L2 LINE L2 2411 2674 -640 1009 216 105 73 chr1 25066520 25066797 -257126867 + MLT1A1 LTR MaLR 12 304 -61 2098 138 0 0 chr1 25066797 25067094 -257126570 - AluSx SINE Alu -15 297 1 1009 216 105 73 chr1 25067094 25067159 -257126505 + MLT1A1 LTR MaLR 304 365 0 2807 247 84 46 chr1 25067255 25068486 -257125178 - L1MEd LINE L1 -4858 1271 1 200 139 116 0 chr1 25069269 25069312 -257124352 - L2 LINE L2 -2 3311 3264 214 309 29 0 chr1 25072606 25072674 -257120990 + CT-rich Low_complexity Low_complexity 3 72 0 493 285 0 21 chr1 25073508 25073652 -257120012 - MIR3 SINE MIR -62 146 6 2332 93 10 0 chr1 25073727 25074028 -257119636 + AluSq SINE Alu 1 304 -9 1231 97 0 0 chr1 25074028 25074183 -257119481 + AluSg/x SINE Alu 137 291 -21 537 268 39 22 chr1 25076219 25076398 -257117266 + MIR3 SINE MIR 20 201 -7 233 250 29 29 chr1 25076550 25076618 -257117046 + MIR3 SINE MIR 110 177 -31 1370 186 145 49 chr1 25079239 25079626 -257114038 + MLT1D LTR MaLR 65 488 -17 247 299 109 43 chr1 25083008 25083448 -257110216 - L2 LINE L2 -243 3029 2478 182 245 20 0 chr1 25083918 25083967 -257109697 + L2 LINE L2 3174 3223 -90 413 269 92 0 chr1 25084905 25085024 -257108640 - MIR SINE MIR -105 157 28 686 155 0 0 chr1 25086081 25086184 -257107480 + MER46A DNA MER2_type 45 147 -89 2079 114 28 10 chr1 25086805 25087095 -257106569 - AluSg SINE Alu -15 295 1 2389 79 3 0 chr1 25087827 25088119 -257105545 - AluSq SINE Alu -20 293 1 32 75 0 0 chr1 25088123 25088190 -257105474 + AT_rich Low_complexity Low_complexity 1 67 0 1995 102 53 7 chr1 25088200 25088483 -257105181 - AluSx SINE Alu -16 296 1 1856 219 133 17 chr1 25088572 25089220 -257104444 + L1ME1 LINE L1 4422 5144 -1002 654 150 39 24 chr1 25089222 25089349 -257104315 + AluJb SINE Alu 176 304 -8 2995 205 106 33 chr1 25089349 25090301 -257103363 + L1ME1 LINE L1 5163 6332 -2 190 302 0 0 chr1 25090637 25090690 -257102974 + L2 LINE L2 3182 3234 -38 2217 104 21 0 chr1 25090845 25091133 -257102531 + AluSq SINE Alu 1 294 -19 475 274 168 0 chr1 25091940 25092137 -257101527 - MIR SINE MIR -1 261 32 2487 77 0 0 chr1 25092961 25093258 -257100406 - AluY SINE Alu -14 297 1 2046 141 7 10 chr1 25093296 25093595 -257100069 - AluSx SINE Alu -14 298 1 223 267 33 33 chr1 25093733 25093823 -257099841 - MIR SINE MIR -70 192 103 1199 112 48 0 chr1 25094198 25094385 -257099279 - MER30 DNA MER1_type -34 196 1 199 259 0 19 chr1 25094896 25094950 -257098714 - MIR3 SINE MIR -2 206 154 246 62 0 0 chr1 25098035 25098067 -257095597 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1691 169 10 14 chr1 25099595 25099890 -257093774 + AluJb SINE Alu 1 294 -18 256 207 35 35 chr1 25100021 25100079 -257093585 + L2 LINE L2 3215 3272 0 276 53 0 0 chr1 25100529 25100567 -257093097 + (CA)n Simple_repeat Simple_repeat 2 39 0 333 320 59 35 chr1 25101578 25101781 -257091883 + MIR SINE MIR 14 221 -41 2165 121 3 7 chr1 25101826 25102124 -257091540 + AluSx SINE Alu 1 297 -15 199 269 60 15 chr1 25102565 25102632 -257091032 - MER5C DNA MER1_type -238 86 17 180 179 0 0 chr1 25104499 25104538 -257089126 + (TA)n Simple_repeat Simple_repeat 1 39 0 628 250 21 0 chr1 25105141 25105285 -257088379 + AluJo SINE Alu 5 151 -161 612 136 0 0 chr1 25105406 25105494 -257088170 + AluS SINE Alu 1 88 -225 1380 178 66 4 chr1 25105496 25105754 -257087910 + AluJb SINE Alu 23 296 -16 1471 111 120 0 chr1 25105767 25105984 -257087680 + AluY SINE Alu 60 302 -9 25 0 0 0 chr1 25107101 25107126 -257086538 + AT_rich Low_complexity Low_complexity 1 25 0 32 0 0 0 chr1 25108442 25108474 -257085190 + AT_rich Low_complexity Low_complexity 1 32 0 1376 222 31 3 chr1 25108858 25109146 -257084518 + AluJo SINE Alu 1 296 -16 449 154 8 12 chr1 25109155 25109279 -257084385 + AluJb SINE Alu 105 280 -32 808 154 0 23 chr1 25109376 25109506 -257084158 - FLAM_A SINE Alu -4 129 3 2055 162 0 0 chr1 25110099 25110408 -257083256 + AluJb SINE Alu 1 309 -3 235 242 32 16 chr1 25110498 25110560 -257083104 + L3 LINE CR1 1165 1227 -350 247 296 42 0 chr1 25110565 25110636 -257083028 - MIR SINE MIR -158 104 31 414 306 161 19 chr1 25110812 25111136 -257082528 - L2 LINE L2 -1000 2314 1945 472 240 98 6 chr1 25112333 25112516 -257081148 + L1ME4a LINE L1 5552 5751 -370 22 0 0 0 chr1 25112651 25112673 -257080991 + AT_rich Low_complexity Low_complexity 1 22 0 2112 120 3 13 chr1 25112682 25112982 -257080682 - AluSx SINE Alu -15 297 1 426 280 115 21 chr1 25113003 25113246 -257080418 + L1ME4a LINE L1 5856 6121 0 2118 89 0 4 chr1 25114077 25114346 -257079318 - AluSq SINE Alu -8 305 38 2291 103 0 13 chr1 25114608 25114918 -257078746 - AluSx SINE Alu -6 306 1 26 0 0 0 chr1 25115342 25115368 -257078296 + AT_rich Low_complexity Low_complexity 1 26 0 1632 159 26 43 chr1 25115863 25116165 -257077499 - AluJb SINE Alu -15 297 1 331 214 66 148 chr1 25117580 25117762 -257075902 + MIR3 SINE MIR 32 198 -10 2163 119 0 0 chr1 25120736 25121022 -257072642 + AluSx SINE Alu 1 286 -26 2854 6 0 0 chr1 25121033 25121344 -257072320 + AluYa5 SINE Alu 1 311 0 23 33 0 0 chr1 25121923 25121953 -257071711 + AT_rich Low_complexity Low_complexity 1 30 0 2459 85 0 0 chr1 25122044 25122349 -257071315 + AluSg SINE Alu 1 305 -5 1715 168 37 20 chr1 25122973 25123270 -257070394 - AluJo SINE Alu -10 302 1 181 336 74 25 chr1 25123847 25123969 -257069695 - L2 LINE L2 -27 3286 3159 193 383 64 14 chr1 25124299 25124440 -257069224 - L2 LINE L2 -607 2707 2560 570 141 0 22 chr1 25124784 25124876 -257068788 + AluJ/FLAM SINE Alu 10 99 -213 336 24 0 0 chr1 25125493 25125534 -257068130 + (CA)n Simple_repeat Simple_repeat 2 42 0 1049 157 55 0 chr1 25126145 25126362 -257067302 + L1MA8 LINE L1 6060 6288 -3 1989 135 10 16 chr1 25126462 25126632 -257067032 - AluSx SINE Alu -11 301 132 207 0 0 0 chr1 25126632 25126655 -257067009 + (TG)n Simple_repeat Simple_repeat 2 24 0 1989 135 10 16 chr1 25126655 25126787 -257066877 - AluSx SINE Alu -180 132 1 2241 118 3 0 chr1 25128283 25128587 -257065077 + AluSp SINE Alu 1 305 -8 296 298 98 64 chr1 25129835 25130100 -257063564 + L2 LINE L2 2618 2891 -423 2113 106 47 10 chr1 25130232 25130533 -257063131 - AluSx SINE Alu 0 312 1 383 111 0 0 chr1 25130625 25130679 -257062985 + Alu SINE Alu 1 54 -254 1530 77 16 0 chr1 25130679 25130873 -257062791 + AluSg/x SINE Alu 92 288 -24 251 329 0 0 chr1 25132947 25133017 -257060647 + (CATA)n Simple_repeat Simple_repeat 3 72 0 2351 106 0 0 chr1 25133845 25134156 -257059508 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr1 25134432 25134460 -257059204 + AT_rich Low_complexity Low_complexity 1 28 0 810 158 17 90 chr1 25135456 25135633 -257058031 + AluJb SINE Alu 137 300 -12 1590 160 22 47 chr1 25136063 25136381 -257057283 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 25136665 25136688 -257056976 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr1 25136698 25136736 -257056928 + AT_rich Low_complexity Low_complexity 1 38 0 1832 164 30 3 chr1 25137103 25137407 -257056257 + AluJb SINE Alu 1 312 0 500 75 12 0 chr1 25137440 25137520 -257056144 + L1MA1 LINE L1 6222 6302 0 1915 167 10 0 chr1 25137670 25137975 -257055689 - AluJb SINE Alu -4 308 1 2247 114 3 0 chr1 25138156 25138455 -257055209 + AluSq SINE Alu 2 301 -12 759 166 122 11 chr1 25138516 25138697 -257054967 + MER3 DNA MER1_type 5 205 -4 190 295 238 33 chr1 25138894 25139016 -257054648 - MIR SINE MIR -15 247 101 445 260 27 14 chr1 25139187 25139333 -257054331 + MER69A DNA AcHobo 1 148 -29 1779 170 3 0 chr1 25139636 25139924 -257053740 + AluJo SINE Alu 1 289 -23 3736 159 106 36 chr1 25140000 25140837 -257052827 + L1MB7 LINE L1 4563 5341 -843 2042 119 10 10 chr1 25140837 25141139 -257052525 + AluSx SINE Alu 11 312 0 2249 102 3 16 chr1 25141145 25141460 -257052204 + AluSp SINE Alu 1 311 -2 3736 159 106 36 chr1 25141460 25142105 -257051559 + L1MB7 LINE L1 5345 6172 -12 2269 70 7 10 chr1 25142105 25142405 -257051259 - AluSq SINE Alu -14 299 1 423 235 49 10 chr1 25142963 25143065 -257050599 + MIR SINE MIR 58 163 -99 195 139 0 0 chr1 25144135 25144171 -257049493 + (CCG)n Simple_repeat Simple_repeat 2 37 0 224 234 288 36 chr1 25144592 25144703 -257048961 - L2 LINE L2 0 3313 3175 948 203 41 45 chr1 25145172 25145418 -257048246 + L1ME2 LINE L1 5911 6155 -9 747 185 0 30 chr1 25145514 25145649 -257048015 + FLAM_A SINE Alu 2 132 -1 460 196 0 0 chr1 25145653 25145745 -257047919 + HAL1 LINE L1 2074 2165 -342 2214 109 0 0 chr1 25145762 25146074 -257047590 - AluSx SINE Alu 0 312 1 320 284 91 0 chr1 25146075 25146163 -257047501 + HAL1 LINE L1 2147 2242 -265 2251 49 3 3 chr1 25146256 25146544 -257047120 + AluY SINE Alu 1 288 -23 558 0 0 0 chr1 25146545 25146607 -257047057 + (TA)n Simple_repeat Simple_repeat 1 62 0 768 208 56 19 chr1 25146608 25146824 -257046840 + HAL1 LINE L1 2278 2501 -6 424 288 26 0 chr1 25146838 25146991 -257046673 + L1ME LINE L1 5599 5755 -366 988 188 0 0 chr1 25146993 25147153 -257046511 + FRAM SINE Alu 1 160 -6 1733 154 85 3 chr1 25147190 25147508 -257046156 + MER7A DNA MER2_type 1 342 -4 1139 84 0 7 chr1 25147581 25147735 -257045929 + AluSx SINE Alu 1 153 -159 3125 122 44 8 chr1 25147777 25148302 -257045362 - L1MB2 LINE L1 -3 6168 5625 2193 74 47 0 chr1 25148318 25148617 -257045047 - AluSq SINE Alu 0 313 1 2118 126 0 0 chr1 25148644 25148953 -257044711 + AluSx SINE Alu 3 311 -1 1483 141 15 41 chr1 25148973 25149243 -257044421 + AluJo SINE Alu 50 312 0 288 287 0 28 chr1 25149478 25149586 -257044078 + MIR SINE MIR 158 262 0 244 266 57 65 chr1 25149997 25150121 -257043543 + MIR SINE MIR 24 146 -62 2102 128 0 0 chr1 25150312 25150616 -257043048 + AluSx SINE Alu 1 304 -8 1758 144 24 10 chr1 25150617 25150915 -257042749 + AluJb SINE Alu 1 302 -10 1009 163 36 50 chr1 25150974 25151195 -257042469 - MER20 DNA MER1_type 0 219 2 1814 132 30 7 chr1 25151413 25151717 -257041947 - AluJb SINE Alu -1 311 1 188 310 132 81 chr1 25152030 25152060 -257041604 + MIR SINE MIR 80 107 -155 2063 77 3 95 chr1 25152060 25152396 -257041268 + AluSq SINE Alu 1 305 -8 188 310 132 81 chr1 25152396 25152539 -257041125 + MIR SINE MIR 107 262 0 2238 111 0 0 chr1 25153274 25153580 -257040084 - AluSq SINE Alu -7 306 1 638 244 143 9 chr1 25153582 25153799 -257039865 + MER113 DNA MER1_type? 233 478 -43 289 310 0 60 chr1 25154088 25154204 -257039460 + L2 LINE L2 3185 3293 -20 1994 113 40 30 chr1 25154213 25154515 -257039149 + AluSx SINE Alu 1 305 -7 580 286 6 37 chr1 25154600 25154761 -257038903 + MIR SINE MIR 18 173 -89 225 91 0 0 chr1 25154770 25154803 -257038861 - MSTD LTR MaLR 0 365 333 1966 145 0 7 chr1 25154807 25155111 -257038553 + AluJb SINE Alu 1 302 -10 853 188 0 0 chr1 25155111 25155260 -257038404 + AluJb SINE Alu 134 282 -30 974 227 61 88 chr1 25155274 25155497 -257038167 - MSTD LTR MaLR -31 365 155 2185 67 0 64 chr1 25155497 25155663 -257038001 - AluY SINE Alu -18 293 155 2515 45 0 10 chr1 25155663 25155977 -257037687 - AluY SINE Alu 0 311 1 2185 67 0 64 chr1 25155977 25156123 -257037541 - AluY SINE Alu -156 155 1 974 227 61 88 chr1 25156123 25156274 -257037390 - MSTD LTR MaLR -241 155 1 5519 200 65 71 chr1 25156274 25156589 -257037075 - MSTD-int LTR MaLR 0 1735 1420 1871 142 7 3 chr1 25156589 25156885 -257036779 - AluJb SINE Alu -15 297 1 5519 200 65 71 chr1 25156885 25157766 -257035898 - MSTD-int LTR MaLR -315 1420 545 1800 133 3 27 chr1 25157766 25158060 -257035604 - AluSg SINE Alu -23 287 1 5519 200 65 71 chr1 25158060 25158202 -257035462 - MSTD-int LTR MaLR -1190 545 404 3571 88 38 97 chr1 25158207 25158402 -257035262 - MER4A LTR ERV1 0 600 395 1846 104 0 11 chr1 25158402 25158662 -257035002 + AluSx SINE Alu 37 293 -19 3571 88 38 97 chr1 25158662 25159104 -257034560 - MER4A LTR ERV1 -205 395 1 751 123 0 87 chr1 25159110 25159174 -257034490 - MER4A-int LTR ERV1 -2 6596 6549 889 150 0 0 chr1 25159174 25159307 -257034357 - FLAM_C SINE Alu 0 133 1 751 123 0 87 chr1 25159307 25159380 -257034284 - MER4A-int LTR ERV1 -49 6549 6471 1709 181 108 10 chr1 25159380 25159788 -257033876 + LTR7 LTR ERV1 1 448 -2 1999 184 109 16 chr1 25159792 25160243 -257033421 + HERVH LTR ERV1 2 494 -7219 17944 136 3 18 chr1 25160260 25163114 -257030550 + HERVH LTR ERV1 773 3585 -4128 14290 112 30 30 chr1 25163116 25165319 -257028345 + HERVH LTR ERV1 3813 6016 -1697 3079 159 18 21 chr1 25165312 25165871 -257027793 + HERVH LTR ERV1 7157 7713 0 * 1647 149 123 20 chr1 25165871 25166279 -257027385 + LTR7 LTR ERV1 1 450 0 19384 117 89 70 chr1 25166281 25167164 -257026500 - MER4A-int LTR ERV1 -125 6473 5608 2307 103 0 0 chr1 25167164 25167474 -257026190 - AluSg SINE Alu 0 310 1 19384 117 89 70 chr1 25167474 25169018 -257024646 - MER4A-int LTR ERV1 -990 5608 4094 2111 102 3 3 chr1 25169018 25169312 -257024352 + AluSc SINE Alu 1 294 -15 19384 117 89 70 chr1 25169312 25170053 -257023611 - MER4A-int LTR ERV1 -2504 4094 3368 1850 113 0 0 chr1 25170053 25170309 -257023355 + AluSx SINE Alu 37 292 -20 19384 117 89 70 chr1 25170309 25170843 -257022821 - MER4A-int LTR ERV1 -3230 3368 2845 1991 145 3 0 chr1 25170843 25171146 -257022518 - AluSq SINE Alu -9 304 1 19384 117 89 70 chr1 25171146 25171506 -257022158 - MER4A-int LTR ERV1 -3753 2845 2493 2315 82 0 0 chr1 25171506 25171812 -257021852 - AluY SINE Alu -5 306 1 19384 117 89 70 chr1 25171812 25171861 -257021803 - MER4A-int LTR ERV1 -4105 2493 2446 2106 99 0 3 chr1 25171861 25172196 -257021468 - AluSx SINE Alu 0 334 1 19384 117 89 70 chr1 25172196 25172835 -257020829 - MER4A-int LTR ERV1 -4152 2446 1820 2098 107 23 3 chr1 25172835 25173135 -257020529 - AluSx SINE Alu -6 306 1 19384 117 89 70 chr1 25173135 25173349 -257020315 - MER4A-int LTR ERV1 -4778 1820 1611 2223 114 0 0 chr1 25173349 25173656 -257020008 - AluSx SINE Alu -5 307 1 19384 117 89 70 chr1 25173656 25173996 -257019668 - MER4A-int LTR ERV1 -4987 1611 195 1423 224 31 48 chr1 25174017 25174374 -257019290 - MER4A-int LTR ERV1 -4131 2200 1850 2957 131 259 40 chr1 25174395 25174602 -257019062 - MER4A-int LTR ERV1 -5770 828 668 1844 150 0 19 chr1 25174602 25174909 -257018755 - AluJb SINE Alu -11 301 1 2957 131 259 40 chr1 25174909 25175380 -257018284 - MER4A-int LTR ERV1 -5930 668 1 3922 105 6 48 chr1 25175383 25176009 -257017655 - MER4A LTR ERV1 0 600 1 1607 173 73 90 chr1 25176009 25176297 -257017367 - MLT1A1-int LTR MaLR -1332 403 112 2244 95 0 0 chr1 25176297 25176601 -257017063 + AluSx SINE Alu 1 304 -8 1607 173 73 90 chr1 25176601 25176625 -257017039 - MLT1A1-int LTR MaLR -1623 112 89 1517 143 26 68 chr1 25176625 25176959 -257016705 + AluSx SINE Alu 1 312 0 1607 173 73 90 chr1 25176959 25177055 -257016609 - MLT1A1-int LTR MaLR -1646 89 1 361 89 0 0 chr1 25177060 25177105 -257016559 - MLT1A1 LTR MaLR -5 391 347 473 141 0 0 chr1 25177105 25177176 -257016488 - FLAM SINE Alu -16 127 57 1202 161 24 140 chr1 25177178 25177550 -257016114 - MLT1A1 LTR MaLR -36 329 1 765 256 57 5 chr1 25177646 25177857 -257015807 + LTR33 LTR ERVL 1 222 -299 2401 78 0 0 chr1 25178428 25178734 -257014930 - AluSg SINE Alu -4 306 1 2166 89 0 40 chr1 25179116 25179442 -257014222 - AluSq SINE Alu 0 313 1 3847 87 31 61 chr1 25180024 25180146 -257013518 + MER4A LTR ERV1 1 125 -475 2033 104 23 3 chr1 25180146 25180445 -257013219 + AluSx SINE Alu 1 305 -7 3847 87 31 61 chr1 25180445 25180941 -257012723 + MER4A LTR ERV1 125 600 0 302 241 230 0 chr1 25182235 25182322 -257011342 + L2 LINE L2 2124 2230 -1084 2002 116 20 7 chr1 25182322 25182625 -257011039 - AluSg SINE Alu -3 307 1 1370 126 76 9 chr1 25182625 25182848 -257010816 - MER2 DNA MER2_type -107 238 1 477 261 92 0 chr1 25182848 25183001 -257010663 + L2 LINE L2 2534 2700 -614 24 0 0 0 chr1 25183001 25183025 -257010639 + AT_rich Low_complexity Low_complexity 1 24 0 518 174 0 12 chr1 25183034 25183120 -257010544 - AluJo SINE Alu -151 161 77 1977 122 3 7 chr1 25183145 25183488 -257010176 + AluSx SINE Alu 1 312 0 1745 161 30 3 chr1 25183493 25183797 -257009867 + AluJo SINE Alu 1 312 0 864 171 0 0 chr1 25183820 25183960 -257009704 + FRAM SINE Alu 15 154 -22 1369 263 49 23 chr1 25183962 25184382 -257009282 + L2 LINE L2 2708 3147 -166 1430 165 3 111 chr1 25184382 25184568 -257009096 - AluJb SINE Alu -4 298 162 2352 73 0 19 chr1 25184568 25184885 -257008779 - AluY SINE Alu 0 311 1 1430 165 3 111 chr1 25184885 25185032 -257008632 - AluJb SINE Alu -140 162 1 1369 263 49 23 chr1 25185032 25185200 -257008464 + L2 LINE L2 3147 3309 -4 222 224 171 0 chr1 25185207 25185283 -257008381 + L2 LINE L2 3178 3266 -6 2085 114 0 3 chr1 25185395 25185693 -257007971 - AluY SINE Alu -14 297 1 1069 117 6 6 chr1 25185739 25185918 -257007746 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1875 124 0 0 chr1 25185923 25186196 -257007468 - AluSx SINE Alu -39 273 1 468 35 0 0 chr1 25186205 25186263 -257007401 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 1916 133 13 22 chr1 25186263 25186578 -257007086 - AluSx SINE Alu 0 312 1 819 255 21 34 chr1 25186666 25186901 -257006763 - MIR SINE MIR 0 262 31 186 221 147 29 chr1 25186932 25187000 -257006664 - L2 LINE L2 -525 2789 2714 213 191 106 0 chr1 25187353 25187400 -257006264 - L2 LINE L2 -51 3221 3170 255 31 0 0 chr1 25187445 25187477 -257006187 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 258 171 24 61 chr1 25187501 25187583 -257006081 - MIR SINE MIR -14 248 170 356 306 159 0 chr1 25187615 25187785 -257005879 + MIR SINE MIR 42 238 -24 410 291 26 8 chr1 25187861 25187978 -257005686 + MIR3 SINE MIR 42 160 -48 503 212 40 0 chr1 25188140 25188239 -257005425 + MER5A DNA MER1_type 7 109 -80 586 249 85 42 chr1 25188304 25188469 -257005195 + MER5B DNA MER1_type 1 172 -6 3770 124 40 30 chr1 25188618 25188748 -257004916 - MER4E LTR ERV1 0 766 639 1942 137 7 3 chr1 25188748 25189054 -257004610 - AluSx SINE Alu -5 307 1 3770 124 40 30 chr1 25189054 25189677 -257003987 - MER4E LTR ERV1 -127 639 10 1522 155 7 54 chr1 25189677 25189949 -257003715 + AluJo SINE Alu 13 271 -41 1586 167 29 20 chr1 25189949 25190255 -257003409 - AluJb SINE Alu -3 309 1 1522 155 7 54 chr1 25190255 25190279 -257003385 + AluJo SINE Alu 271 295 -17 521 253 136 40 chr1 25190297 25190495 -257003169 - MIR SINE MIR -6 256 40 552 231 19 0 chr1 25191105 25191213 -257002451 + MER81 DNA DNA 2 111 -3 477 0 0 0 chr1 25191591 25191644 -257002020 + (CAT)n Simple_repeat Simple_repeat 3 55 0 566 250 100 25 chr1 25191903 25192103 -257001561 - MIR SINE MIR -47 215 1 199 277 32 64 chr1 25192103 25192176 -257001488 + L2 LINE L2 3201 3270 -2 275 315 67 0 chr1 25192580 25192669 -257000995 + MIR SINE MIR 50 144 -118 1953 207 55 16 chr1 25192907 25192953 -257000711 - L1ME1 LINE L1 -8 6158 6115 1712 132 4 11 chr1 25192953 25193226 -257000438 - AluJo SINE Alu -9 303 33 1953 207 55 16 chr1 25193226 25193619 -257000045 - L1ME1 LINE L1 -51 6115 5702 407 325 34 0 chr1 25193710 25193827 -256999837 - MIR SINE MIR -55 153 33 207 220 40 0 chr1 25193839 25193889 -256999775 - L2 LINE L2 -9 3263 3212 327 258 31 0 chr1 25194433 25194530 -256999134 + L1ME LINE L1 4886 4985 -1161 1013 135 0 0 chr1 25194706 25194839 -256998825 + AluJo/FLAM SINE Alu 1 133 -179 374 127 36 0 chr1 25194840 25194895 -256998769 + AluJ/FRAM SINE Alu 233 289 -13 954 212 126 0 chr1 25194908 25195139 -256998525 - MIR SINE MIR -2 260 1 310 203 0 0 chr1 25195285 25195344 -256998320 + L1ME LINE L1 5373 5431 -739 448 267 122 22 chr1 25195867 25196047 -256997617 - L2 LINE L2 -2 3311 3114 180 97 0 0 chr1 25196108 25196139 -256997525 + (TC)n Simple_repeat Simple_repeat 2 32 0 267 203 0 0 chr1 25196163 25196222 -256997442 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1824 161 0 21 chr1 25196237 25196389 -256997275 - AluJb SINE Alu -30 282 137 2108 159 0 0 chr1 25196389 25196697 -256996967 - AluJb SINE Alu -4 308 1 1824 161 0 21 chr1 25196697 25196830 -256996834 - AluJb SINE Alu -175 137 3 544 278 111 21 chr1 25196854 25197188 -256996476 - L2 LINE L2 -776 2538 2175 318 266 204 0 chr1 25197188 25197301 -256996363 - L1M4 LINE L1 -2727 3419 3284 376 296 10 10 chr1 25197465 25197563 -256996101 + L2 LINE L2 3154 3251 -21 * 406 171 143 19 chr1 25197558 25197663 -256996001 - MIR SINE MIR 0 262 145 1305 177 23 0 chr1 25197672 25197932 -256995732 - L1MB7 LINE L1 -18 6166 5901 965 87 0 0 chr1 25197932 25198059 -256995605 + THE1C LTR MaLR 249 375 0 249 182 0 0 chr1 25198059 25198103 -256995561 - L2 LINE L2 -213 3059 3016 395 328 11 0 chr1 25198576 25198712 -256994952 + MIR SINE MIR 9 146 -62 408 218 46 20 chr1 25199168 25199299 -256994365 - MLT1H LTR MaLR 0 549 403 390 262 134 0 chr1 25199352 25199516 -256994148 - MLT1H LTR MaLR -249 300 115 2162 99 0 53 chr1 25199547 25199850 -256993814 + AluSx SINE Alu 1 287 -25 484 296 87 112 chr1 25200771 25201210 -256992454 - L2 LINE L2 0 3272 2845 326 326 79 47 chr1 25201299 25201578 -256992086 + L3 LINE CR1 1020 1307 -270 2101 100 0 4 chr1 25201738 25202009 -256991655 + AluSg SINE Alu 1 270 -40 2230 131 0 3 chr1 25202120 25202433 -256991231 + AluSx SINE Alu 1 312 0 594 274 99 24 chr1 25202437 25202649 -256991015 + MIR SINE MIR 34 261 -1 1694 209 0 0 chr1 25202704 25203010 -256990654 + AluJb SINE Alu 1 306 -6 2587 74 0 3 chr1 25203141 25203450 -256990214 - AluSq SINE Alu -5 308 1 235 160 15 118 chr1 25203951 25204039 -256989625 - MIR SINE MIR -67 141 84 404 311 64 21 chr1 25204417 25204614 -256989050 - MIR SINE MIR -8 254 40 1482 166 8 4 chr1 25205399 25205634 -256988030 + AluJo SINE Alu 1 236 -76 1764 241 64 39 chr1 25205706 25205832 -256987832 + L1MC4a LINE L1 5254 5375 -2433 2415 99 0 3 chr1 25205832 25206146 -256987518 + AluSq SINE Alu 1 313 0 1764 241 64 39 chr1 25206146 25206708 -256986956 + L1MC4a LINE L1 5375 5959 -1849 304 289 45 94 chr1 25206751 25206952 -256986712 + HAL1 LINE L1 2316 2506 -1 1803 176 13 0 chr1 25207389 25207691 -256985973 - AluJo SINE Alu -4 308 3 2358 96 3 7 chr1 25207700 25208003 -256985661 - AluSx SINE Alu -10 302 1 572 271 111 24 chr1 25208021 25208228 -256985436 - MIR SINE MIR -1 261 37 258 266 221 32 chr1 25208676 25208830 -256984834 - L2 LINE L2 -1 3312 3130 430 263 0 83 chr1 25209060 25209216 -256984448 + MIR3 SINE MIR 17 159 -49 429 271 49 0 chr1 25209512 25209634 -256984030 + MIR3 SINE MIR 61 188 -20 519 124 134 139 chr1 25210865 25211059 -256982605 + MER5C DNA MER1_type 4 196 -128 2296 85 3 0 chr1 25211077 25211370 -256982294 + AluSx SINE Alu 3 296 -16 1287 133 38 14 chr1 25211378 25211588 -256982076 + AluJb SINE Alu 87 301 -11 2378 200 98 19 chr1 25211594 25211926 -256981738 - L1ME1 LINE L1 -6 6160 5856 2329 92 7 0 chr1 25211926 25212231 -256981433 - AluSg SINE Alu -3 307 1 2378 200 98 19 chr1 25212231 25212438 -256981226 - L1ME1 LINE L1 -310 5856 5667 2303 102 0 19 chr1 25212438 25212752 -256980912 - AluY SINE Alu -3 308 1 2378 200 98 19 chr1 25212752 25213044 -256980620 - L1ME1 LINE L1 -499 5667 5141 463 145 118 13 chr1 25213088 25213226 -256980438 - L1MD1 LINE L1 0 6359 6075 624 212 26 46 chr1 25213226 25213412 -256980252 + FRAM SINE Alu 1 183 0 5188 184 31 56 chr1 25213413 25214337 -256979327 - L1MD1 LINE L1 -157 6085 5140 1614 218 64 80 chr1 25214337 25214464 -256979200 + MLT1D LTR MaLR 1 128 -377 1832 162 14 10 chr1 25214464 25214761 -256978903 - AluJo SINE Alu -13 299 2 1614 218 64 80 chr1 25214761 25215146 -256978518 + MLT1D LTR MaLR 128 505 0 5188 184 31 56 chr1 25215146 25215403 -256978261 - L1MD1 LINE L1 -1102 5140 4878 1328 164 24 155 chr1 25215403 25215823 -256977841 - MLT1A1 LTR MaLR 0 365 1 5188 184 31 56 chr1 25215823 25215865 -256977799 - L1MD1 LINE L1 -1364 4878 4836 1318 164 18 123 chr1 25215865 25216206 -256977458 + AluYb8 SINE Alu 1 305 -13 5188 184 31 56 chr1 25216206 25217014 -256976650 - L1MD1 LINE L1 -1406 4836 4010 2612 62 0 0 chr1 25217014 25217322 -256976342 - AluY SINE Alu -3 308 1 5188 184 31 56 chr1 25217322 25217406 -256976258 - L1MD1 LINE L1 -2232 4010 3925 2436 88 0 0 chr1 25217406 25217711 -256975953 - AluSg SINE Alu -5 305 1 5188 184 31 56 chr1 25217711 25217959 -256975705 - L1MD1 LINE L1 -2317 3925 3789 402 19 0 19 chr1 25217959 25218011 -256975653 - PRIMA41-int LTR ERV1 -904 7216 7166 329 318 4 90 chr1 25218030 25218152 -256975512 - PRIMA41-int LTR ERV1 -2242 6384 6253 2284 110 3 0 chr1 25218152 25218452 -256975212 + AluSg SINE Alu 1 301 -9 1866 171 7 0 chr1 25218462 25218755 -256974909 + AluJb SINE Alu 2 296 -16 329 318 4 90 chr1 25218755 25218876 -256974788 - PRIMA41-int LTR ERV1 -2382 6244 6152 263 322 19 38 chr1 25218869 25219080 -256974584 - PRIMA41-int LTR ERV1 -3119 4637 4431 * 747 321 49 41 chr1 25219082 25219596 -256974068 - PRIMA41-int LTR ERV1 -3387 3735 3218 2357 112 0 3 chr1 25219899 25220212 -256973452 - AluSx SINE Alu 0 312 1 320 261 0 0 chr1 25220412 25220477 -256973187 + LOR1-int LTR ERV1 525 589 -7531 204 217 0 0 chr1 25221349 25221395 -256972269 + (CA)n Simple_repeat Simple_repeat 2 47 0 1471 130 60 60 chr1 25221395 25221433 -256972231 - LOR1b-int LTR ERV1 -7700 420 383 2204 139 0 0 chr1 25221433 25221735 -256971929 + AluSx SINE Alu 1 302 -10 1471 130 60 60 chr1 25221735 25221995 -256971669 - LOR1b-int LTR ERV1 -7736 384 122 1825 157 164 8 chr1 25222109 25222505 -256971159 - LOR1b LTR ERV1 0 461 4 2102 236 49 36 chr1 25222507 25223246 -256970418 - L1MD1 LINE L1 -2354 3792 3045 240 250 29 0 chr1 25223252 25223320 -256970344 + MLT1G1 LTR MaLR 526 595 0 928 204 91 11 chr1 25223424 25223610 -256970054 + AluJo SINE Alu 1 201 -111 1604 223 31 15 chr1 25223610 25224090 -256969574 - L1MD1 LINE L1 -3109 3037 2550 7692 25 1 2 chr1 25224090 25225706 -256967958 + L1PA4 LINE L1 4541 6155 0 288 206 29 0 chr1 25225779 25225847 -256967817 + MLT1G1 LTR MaLR 526 595 0 1540 196 60 11 chr1 25225951 25226232 -256967432 + AluJb SINE Alu 1 295 -17 1359 168 62 65 chr1 25226276 25226585 -256967079 - AluJo SINE Alu -4 308 1 253 329 61 0 chr1 25226839 25226921 -256966743 + MER91 DNA MER1_type 52 138 -58 728 277 48 0 chr1 25227495 25227683 -256965981 + MIR SINE MIR 57 253 -9 756 225 75 0 chr1 25227853 25228026 -256965638 - MER51C LTR ERV1 0 640 455 1843 196 63 65 chr1 25228390 25228508 -256965156 + MLT1D LTR MaLR 1 118 -387 1741 163 14 10 chr1 25228508 25228817 -256964847 - AluJb SINE Alu 0 312 5 1843 196 63 65 chr1 25228817 25229204 -256964460 + MLT1D LTR MaLR 118 505 0 306 222 0 0 chr1 25229220 25229274 -256964390 - MIR SINE MIR -132 130 77 2285 105 3 10 chr1 25229417 25229722 -256963942 - AluSq SINE Alu -10 303 1 1320 157 81 8 chr1 25229904 25230074 -256963590 - AluJo SINE Alu -8 304 111 240 35 0 0 chr1 25230074 25230103 -256963561 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1320 157 81 8 chr1 25230103 25230168 -256963496 - AluJo SINE Alu -201 111 52 1117 102 14 0 chr1 25230175 25230322 -256963342 + AluSg/x SINE Alu 163 311 -1 256 200 227 0 chr1 25230792 25230903 -256962761 - MIR SINE MIR -76 186 44 287 303 45 45 chr1 25231256 25231388 -256962276 + MIR SINE MIR 16 147 -61 370 234 43 0 chr1 25231408 25231502 -256962162 - MER63C DNA MER1_type -11 919 822 2162 70 11 21 chr1 25231502 25231809 -256961855 + AluSg SINE Alu 1 304 0 355 188 86 78 chr1 25231815 25231872 -256961792 - MER63C DNA MER1_type -675 385 330 1726 163 9 77 chr1 25231872 25232198 -256961466 - AluJo SINE Alu -8 304 1 2538 85 0 0 chr1 25232206 25232512 -256961152 - AluSc SINE Alu -3 306 1 355 188 86 78 chr1 25232512 25232573 -256961091 - MER63C DNA MER1_type -736 324 257 903 129 0 0 chr1 25232893 25233017 -256960647 - AluJb SINE Alu -188 124 1 206 239 0 0 chr1 25233393 25233439 -256960225 - L2 LINE L2 -21 3251 3206 1285 104 0 118 chr1 25233585 25233806 -256959858 - AluJb SINE Alu -117 195 1 882 278 76 31 chr1 25233808 25234160 -256959504 + L2 LINE L2 669 1045 -2269 2384 78 10 0 chr1 25234160 25234454 -256959210 - AluSx SINE Alu -15 297 1 882 278 76 31 chr1 25234454 25234522 -256959142 + L2 LINE L2 1045 1108 -2206 2366 218 75 31 chr1 25234522 25234919 -256958745 + L2 LINE L2 2241 2619 -694 2120 170 31 13 chr1 25234919 25235308 -256958356 + MLT2C1 LTR ERVL 2 397 0 2366 218 75 31 chr1 25235308 25235623 -256958041 + L2 LINE L2 2619 3004 -309 2153 147 3 0 chr1 25235623 25235929 -256957735 - AluSx SINE Alu -5 307 1 2366 218 75 31 chr1 25235929 25235994 -256957670 + L2 LINE L2 3004 3065 -248 624 227 130 5 chr1 25236063 25236248 -256957416 - L1ME3 LINE L1 -66 6096 5889 482 261 94 57 chr1 25236256 25236501 -256957163 + L2 LINE L2 3060 3313 0 2084 133 3 23 chr1 25236503 25236805 -256956859 + AluSx SINE Alu 1 296 -16 461 235 61 15 chr1 25236808 25236940 -256956724 - MIR SINE MIR -109 153 16 387 217 33 22 chr1 25237045 25237137 -256956527 - L2 LINE L2 0 3272 3180 576 171 19 95 chr1 25237312 25237406 -256956258 + MIR SINE MIR 27 106 -156 2427 80 0 16 chr1 25237406 25237718 -256955946 + AluSg SINE Alu 1 307 -3 576 171 19 95 chr1 25237718 25237781 -256955883 + MIR SINE MIR 106 172 -90 272 291 23 23 chr1 25237790 25237876 -256955788 + MER5C DNA MER1_type 1 86 -238 935 179 6 6 chr1 25238035 25238197 -256955467 + FRAM SINE Alu 1 162 -4 199 164 0 36 chr1 25238201 25238256 -256955408 + MER5C DNA MER1_type 270 322 -2 205 319 28 0 chr1 25238263 25238335 -256955329 + MIR SINE MIR 179 252 -10 2504 83 3 0 chr1 25238708 25239020 -256954644 - AluSq SINE Alu 0 313 1 1175 157 64 149 chr1 25239949 25240358 -256953306 - MLT1A2 LTR MaLR 0 374 1 411 311 93 59 chr1 25240402 25240691 -256952973 + L2 LINE L2 2933 3231 -41 222 37 0 0 chr1 25240827 25240854 -256952810 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 636 116 0 26 chr1 25240869 25240970 -256952694 - MSTA LTR MaLR -74 354 239 526 208 0 8 chr1 25241144 25241264 -256952400 - MER103 DNA DNA -46 120 2 254 295 18 80 chr1 25241284 25241327 -256952337 - L2 LINE L2 -4 3309 3265 2947 122 7 2 chr1 25241327 25241753 -256951911 + MSTA LTR MaLR 1 428 0 254 295 18 80 chr1 25241753 25241821 -256951843 - L2 LINE L2 -48 3265 3205 462 300 63 11 chr1 25241861 25242051 -256951613 - MIR SINE MIR -45 217 18 256 247 27 0 chr1 25242105 25242178 -256951486 + (CCCCAG)n Simple_repeat Simple_repeat 1 75 0 640 262 153 13 chr1 25242768 25242997 -256950667 + MIR SINE MIR 2 262 0 515 226 13 44 chr1 25244645 25244804 -256948860 - MER5A DNA MER1_type -29 160 7 205 256 0 0 chr1 25244868 25244911 -256948753 + MIR SINE MIR 111 153 -109 390 306 24 28 chr1 25245999 25246168 -256947496 + MIR3 SINE MIR 10 179 -59 281 225 146 22 chr1 25246192 25246281 -256947383 - MIR3 SINE MIR -46 162 63 2069 115 3 3 chr1 25250576 25250871 -256942793 - AluSg SINE Alu -15 295 1 393 280 23 23 chr1 25250929 25251061 -256942603 - MIR SINE MIR -115 147 16 296 264 11 0 chr1 25251708 25251799 -256941865 + LTR33 LTR ERVL 1 92 -429 250 350 0 0 chr1 25252348 25252488 -256941176 + (TG)n Simple_repeat Simple_repeat 1 140 0 354 23 0 0 chr1 25252602 25252645 -256941019 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 1992 113 0 7 chr1 25252645 25252928 -256940736 - AluSq SINE Alu -32 281 1 189 215 25 63 chr1 25254091 25254170 -256939494 + L2 LINE L2 2932 3007 -265 371 288 146 26 chr1 25254803 25255029 -256938635 + L2 LINE L2 2827 3079 -193 485 328 148 0 chr1 25255306 25255556 -256938108 + L2 LINE L2 2986 3272 0 695 273 78 26 chr1 25256002 25256233 -256937431 + MIR SINE MIR 10 252 -10 250 186 0 0 chr1 25256199 25256242 -256937422 + L2 LINE L2 3264 3306 -7 * 392 346 38 0 chr1 25256400 25256533 -256937131 + MIR3 SINE MIR 22 159 -49 721 238 12 0 chr1 25256534 25256702 -256936962 + MER117 DNA MER1_type 1 170 -27 186 269 39 0 chr1 25256716 25256768 -256936896 + MIR3 SINE MIR 151 204 -4 543 279 67 6 chr1 25257376 25257541 -256936123 + MIR3 SINE MIR 19 193 -15 25 31 0 0 chr1 25258521 25258553 -256935111 + AT_rich Low_complexity Low_complexity 1 32 0 214 229 0 0 chr1 25258912 25258960 -256934704 + MIR SINE MIR 79 126 -136 733 178 104 0 chr1 25259022 25259185 -256934479 + MER58A DNA MER1_type 45 224 0 1980 142 0 16 chr1 25259462 25259778 -256933886 - AluSx SINE Alu -1 311 1 862 272 51 24 chr1 25260045 25260299 -256933365 - MIR SINE MIR 0 262 2 331 339 170 6 chr1 25260774 25260945 -256932719 + L2 LINE L2 2901 3099 -173 334 216 137 69 chr1 25261087 25261189 -256932475 + L2 LINE L2 3203 3311 -2 808 246 23 66 chr1 25261420 25261527 -256932137 - MIR SINE MIR -10 252 142 419 179 0 13 chr1 25261527 25261605 -256932059 + MER116 DNA Mariner 1 77 -3 808 246 23 66 chr1 25261605 25261658 -256932006 - MIR SINE MIR -120 142 88 1673 184 4 0 chr1 25261658 25261936 -256931728 + AluJb SINE Alu 1 279 -33 345 24 0 0 chr1 25261937 25261979 -256931685 + (CA)n Simple_repeat Simple_repeat 2 43 0 808 246 23 66 chr1 25261979 25262071 -256931593 - MIR SINE MIR -173 89 8 708 261 14 33 chr1 25262385 25262600 -256931064 + MIR SINE MIR 49 259 -3 615 285 39 34 chr1 25262607 25262814 -256930850 - MIR SINE MIR -21 241 34 213 241 19 0 chr1 25262881 25262935 -256930729 + MIR SINE MIR 83 137 -71 427 269 293 0 chr1 25263234 25263401 -256930263 + MIR SINE MIR 31 246 -16 2348 89 10 0 chr1 25263469 25263772 -256929892 - AluSx SINE Alu -6 306 1 2032 146 0 3 chr1 25263772 25264073 -256929591 - AluJb SINE Alu -12 300 1 2166 111 3 0 chr1 25264267 25264564 -256929100 - AluSp SINE Alu -15 298 1 2049 92 67 0 chr1 25264572 25264854 -256928810 - AluSp SINE Alu -12 301 1 1658 268 85 12 chr1 25264920 25265635 -256928029 + L2 LINE L2 2451 3113 -200 1878 139 0 57 chr1 25265635 25265966 -256927698 - AluJb SINE Alu 0 312 1 183 100 0 0 chr1 25265966 25265996 -256927668 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2066 113 3 0 chr1 25265996 25266278 -256927386 - AluSx SINE Alu -29 283 1 1658 268 85 12 chr1 25266278 25266353 -256927311 + L2 LINE L2 3112 3299 -14 820 317 95 9 chr1 25266836 25267268 -256926396 - L2 LINE L2 0 3272 2804 250 320 53 53 chr1 25268469 25268619 -256925045 + MIR SINE MIR 67 216 -46 * 756 166 94 155 chr1 25268609 25268874 -256924790 + MIR SINE MIR 14 262 0 470 250 185 20 chr1 25268858 25269058 -256924606 - MIR SINE MIR 0 262 30 * 218 331 111 47 chr1 25269120 25269159 -256924505 + L2 LINE L2 3130 3165 -148 2099 123 7 0 chr1 25269159 25269468 -256924196 - AluSq SINE Alu -2 311 1 218 331 111 47 chr1 25269468 25269600 -256924064 + L2 LINE L2 3165 3312 -1 414 319 89 24 chr1 25269974 25270187 -256923477 - MIR SINE MIR -28 234 8 444 293 0 0 chr1 25270248 25270364 -256923300 - MER117 DNA MER1_type -14 183 68 225 284 37 0 chr1 25270426 25270507 -256923157 - MIR SINE MIR -61 147 64 268 221 132 15 chr1 25270611 25270679 -256922985 + MER91 DNA MER1_type 120 189 -1 269 284 0 71 chr1 25271019 25271160 -256922504 + MLT1H LTR MaLR 29 159 -390 185 318 0 32 chr1 25271479 25271542 -256922122 + L2 LINE L2 3149 3209 -63 1721 201 0 6 chr1 25271687 25272001 -256921663 + AluJb SINE Alu 1 312 0 180 243 100 0 chr1 25272259 25272329 -256921335 - L2 LINE L2 -46 3226 3150 887 212 56 0 chr1 25272537 25272735 -256920929 + MIR SINE MIR 5 213 -49 2778 104 3 0 chr1 25272790 25273164 -256920500 - THE1C LTR MaLR 0 375 1 215 368 74 12 chr1 25273177 25273340 -256920324 - L2 LINE L2 -215 3057 2885 185 203 162 14 chr1 25273434 25273508 -256920156 + L2 LINE L2 3016 3100 -172 592 327 132 27 chr1 25273643 25273805 -256919859 + L2 LINE L2 2726 2870 -402 749 195 54 32 chr1 25273805 25273990 -256919674 + MER53 DNA DNA 1 189 0 592 327 132 27 chr1 25273990 25274312 -256919352 + L2 LINE L2 2870 3271 -1 2018 139 0 0 chr1 25274624 25274911 -256918753 - AluJb SINE Alu -25 287 1 452 321 109 0 chr1 25274920 25275104 -256918560 + MIR SINE MIR 53 256 -6 551 285 20 71 chr1 25275145 25275408 -256918256 + MIR SINE MIR 8 256 -6 2011 93 22 47 chr1 25275443 25275764 -256917900 + AluSq SINE Alu 1 313 0 208 250 0 0 chr1 25275796 25275840 -256917824 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 2392 85 3 0 chr1 25276858 25277165 -256916499 + AluSp SINE Alu 1 308 -5 685 320 84 34 chr1 25277177 25277866 -256915798 + L2 LINE L2 2557 3269 -3 452 259 155 6 chr1 25278099 25278292 -256915372 + MIR SINE MIR 33 251 -11 730 284 95 32 chr1 25278754 25279092 -256914572 - L2 LINE L2 -6 3307 2949 2024 106 67 0 chr1 25279139 25279423 -256914241 - AluSg SINE Alu -5 305 3 1151 59 0 0 chr1 25279424 25279560 -256914104 - AluSq/x SINE Alu -177 136 1 450 358 61 0 chr1 25279876 25280024 -256913640 - L2 LINE L2 0 3272 3116 530 304 22 7 chr1 25280538 25280748 -256912916 - MIR SINE MIR -27 235 17 474 267 17 0 chr1 25281067 25281187 -256912477 - MIR SINE MIR -121 141 20 241 79 0 0 chr1 25281714 25281752 -256911912 + L1MB5 LINE L1 6129 6166 -8 2000 122 7 0 chr1 25281891 25282177 -256911487 + AluSq SINE Alu 1 288 -25 1824 132 45 7 chr1 25282217 25282376 -256911288 - AluJb SINE Alu -10 302 126 2058 122 11 0 chr1 25282376 25282663 -256911001 - AluSx SINE Alu -20 292 3 1824 132 45 7 chr1 25282663 25282791 -256910873 - AluJb SINE Alu -186 126 4 305 333 0 0 chr1 25282797 25282887 -256910777 - MIR3 SINE MIR -50 158 69 298 301 109 6 chr1 25282980 25283147 -256910517 - MIR SINE MIR -29 233 45 251 292 136 0 chr1 25283563 25283700 -256909964 + MIR3 SINE MIR 39 196 -12 481 282 60 8 chr1 25284038 25284233 -256909431 - MIR SINE MIR -34 228 18 451 333 65 19 chr1 25285002 25285218 -256908446 + MIR SINE MIR 4 229 -33 217 289 39 39 chr1 25285263 25285367 -256908297 - L2 LINE L2 -33 3239 3136 978 191 0 50 chr1 25285788 25285987 -256907677 - MER5A DNA MER1_type 0 189 1 378 258 21 0 chr1 25285988 25286081 -256907583 - MIR SINE MIR -83 125 31 778 222 33 0 chr1 25286430 25286615 -256907049 - MIR SINE MIR -54 208 20 230 346 31 0 chr1 25287316 25287446 -256906218 + MIR3 SINE MIR 64 197 -11 634 243 286 4 chr1 25287666 25288121 -256905543 + L2 LINE L2 2722 3312 -1 295 105 35 0 chr1 25288128 25288185 -256905479 + GA-rich Low_complexity Low_complexity 4 62 0 501 270 31 37 chr1 25288727 25288890 -256904774 - MER103 DNA DNA -2 164 3 259 345 134 7 chr1 25289112 25289254 -256904410 - MIR SINE MIR -80 182 23 223 272 250 7 chr1 25289467 25289603 -256904061 + MIR SINE MIR 85 253 -9 350 275 44 0 chr1 25289710 25289801 -256903863 + MIR SINE MIR 51 145 -63 804 261 177 32 chr1 25289820 25290199 -256903465 + MLT1J LTR MaLR 30 463 -48 487 275 107 81 chr1 25290209 25290591 -256903073 + MLT1H LTR MaLR 31 422 -127 389 278 40 24 chr1 25291129 25291255 -256902409 + MIR3 SINE MIR 77 204 -4 2072 268 72 12 chr1 25291268 25291752 -256901912 + MLT1E2 LTR MaLR 1 528 -98 2284 94 0 0 chr1 25291752 25292049 -256901615 - AluSg SINE Alu -13 297 1 2072 268 72 12 chr1 25292049 25292151 -256901513 + MLT1E2 LTR MaLR 528 622 -4 309 327 106 30 chr1 25292175 25292374 -256901290 - MIR SINE MIR -29 233 20 645 249 90 21 chr1 25292572 25292761 -256900903 + MIR SINE MIR 58 259 -3 371 335 84 46 chr1 25292783 25293022 -256900642 - MIR SINE MIR -3 259 12 303 275 61 30 chr1 25293169 25293300 -256900364 + L2 LINE L2 2972 3106 -207 224 290 120 20 chr1 25293345 25293445 -256900219 + MIR SINE MIR 30 139 -123 412 321 130 40 chr1 25293797 25294143 -256899521 - L2 LINE L2 -9 3263 2887 242 281 0 0 chr1 25294227 25294291 -256899373 + L2 LINE L2 2996 3059 -213 408 310 21 14 chr1 25294452 25294597 -256899067 + MIR SINE MIR 5 150 -112 292 342 34 8 chr1 25294757 25294874 -256898790 - MER5A DNA MER1_type -6 183 64 227 345 35 35 chr1 25294779 25294924 -256898740 + MER5A DNA MER1_type 40 184 -5 * 326 286 8 25 chr1 25295007 25295126 -256898538 + MLT1H LTR MaLR 48 164 -385 322 119 36 71 chr1 25295288 25295372 -256898292 + MLT1F LTR MaLR 449 529 -13 2208 123 0 0 chr1 25295894 25296195 -256897469 - AluSx SINE Alu -18 294 1 255 296 230 0 chr1 25296646 25296798 -256896866 + MIR SINE MIR 20 206 -56 349 206 0 0 chr1 25296833 25296901 -256896763 - AluSp/q SINE Alu -3 300 233 2251 122 0 0 chr1 25296839 25297133 -256896531 - AluSq SINE Alu -19 294 1 346 293 35 9 chr1 25297376 25297492 -256896172 + MIR3 SINE MIR 42 160 -48 476 212 40 0 chr1 25297653 25297752 -256895912 + MER5A DNA MER1_type 7 109 -80 554 249 85 42 chr1 25297817 25297982 -256895682 + MER5B DNA MER1_type 1 172 -6 1181 204 58 23 chr1 25298131 25298262 -256895402 - MER4E LTR ERV1 0 766 641 2050 145 7 3 chr1 25298262 25298566 -256895098 - AluSx SINE Alu -5 307 3 1181 204 58 23 chr1 25298566 25298782 -256894882 - MER4E LTR ERV1 -125 641 407 1001 245 68 13 chr1 25299095 25299531 -256894133 - L2 LINE L2 -139 3174 2708 941 171 0 0 chr1 25299533 25299673 -256893991 - FRAM SINE Alu -22 154 15 908 221 45 21 chr1 25299706 25299996 -256893668 - AluJo SINE Alu -1 301 5 1543 185 4 8 chr1 25350064 25350329 -256843335 - AluJb SINE Alu -48 264 1 471 292 36 7 chr1 25350353 25350490 -256843174 - MIR SINE MIR -120 142 2 208 321 25 0 chr1 25351974 25352055 -256841609 + MIR SINE MIR 174 256 -6 731 226 20 35 chr1 25352117 25352316 -256841348 - MIR SINE MIR -32 230 35 498 250 70 53 chr1 25352694 25352922 -256840742 - MER113 DNA MER1_type? -41 480 249 254 142 0 53 chr1 25352938 25353051 -256840613 + (TCCCC)n Simple_repeat Simple_repeat 5 111 0 183 233 0 0 chr1 25353177 25353220 -256840444 + L2 LINE L2 3034 3076 -196 661 320 28 10 chr1 25353337 25353578 -256840086 - MIR SINE MIR -6 256 3 1642 187 11 0 chr1 25353644 25353927 -256839737 + AluJo SINE Alu 1 286 -26 195 129 0 0 chr1 25353931 25353962 -256839702 + (TG)n Simple_repeat Simple_repeat 2 32 0 208 260 20 10 chr1 25353965 25354065 -256839599 + (TA)n Simple_repeat Simple_repeat 1 101 0 291 36 71 18 chr1 25354161 25354217 -256839447 + T-rich Low_complexity Low_complexity 4 62 0 1610 158 62 0 chr1 25354223 25354496 -256839168 - AluJb SINE Alu -9 303 14 279 273 115 21 chr1 25354547 25354715 -256838949 - MIR SINE MIR 0 262 71 281 277 50 50 chr1 25355002 25355103 -256838561 - MIR SINE MIR -115 147 47 256 271 0 24 chr1 25355487 25355572 -256838092 + MIR3 SINE MIR 74 156 -52 276 298 73 51 chr1 25355575 25355753 -256837911 + MER113 DNA MER1_type? 1 182 -339 838 209 50 10 chr1 25355780 25355981 -256837683 + MIR SINE MIR 15 223 -39 914 228 79 0 chr1 25356027 25356255 -256837409 + MER113 DNA MER1_type? 218 463 -58 620 267 33 12 chr1 25356546 25356768 -256836896 + MIR SINE MIR 37 262 0 219 333 74 0 chr1 25356884 25356965 -256836699 + L2 LINE L2 3202 3288 -25 279 79 0 0 chr1 25356967 25357005 -256836659 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 2084 121 3 0 chr1 25357405 25357702 -256835962 + AluSx SINE Alu 1 298 -14 43 0 0 0 chr1 25357946 25357989 -256835675 + AT_rich Low_complexity Low_complexity 1 43 0 2364 86 0 0 chr1 25358064 25358366 -256835298 + AluSg SINE Alu 1 302 -8 895 248 60 16 chr1 25358506 25358756 -256834908 - MIR SINE MIR 0 262 2 473 221 0 0 chr1 25358808 25358903 -256834761 - MIR SINE MIR -108 154 60 253 289 10 29 chr1 25359363 25359467 -256834197 + MIR SINE MIR 161 262 0 409 209 12 0 chr1 25359647 25359733 -256833931 + MIR3 SINE MIR 81 167 -41 582 310 70 41 chr1 25360132 25360675 -256832989 + L2 LINE L2 2691 3249 -23 321 267 193 7 chr1 25360993 25361143 -256832521 - MIR SINE MIR -15 247 70 2194 220 59 42 chr1 25361161 25361664 -256832000 - L1ME3 LINE L1 0 6162 5646 2426 119 37 99 chr1 25361664 25361861 -256831803 + Tigger2a DNA MER2_type 1 209 -2499 1319 166 11 120 chr1 25361861 25362211 -256831453 - AluJo SINE Alu 0 312 1 2426 119 37 99 chr1 25362211 25362476 -256831188 + Tigger2a DNA MER2_type 209 434 0 2194 220 59 42 chr1 25362476 25362563 -256831101 - L1ME3 LINE L1 -516 5646 5562 486 220 0 108 chr1 25362908 25362971 -256830693 - MIR SINE MIR -24 238 170 1993 139 0 7 chr1 25362971 25363280 -256830384 + AluSx SINE Alu 1 307 -5 486 220 0 108 chr1 25363280 25363402 -256830262 - MIR SINE MIR -92 170 73 197 265 108 36 chr1 25363469 25363552 -256830112 + MIR SINE MIR 169 257 -5 1805 168 0 7 chr1 25363552 25363850 -256829814 + AluJo SINE Alu 1 296 -16 1280 163 28 67 chr1 25363979 25364262 -256829402 + AluJo SINE Alu 39 310 -2 242 269 84 8 chr1 25364615 25364734 -256828930 + MIR SINE MIR 19 146 -116 354 362 66 0 chr1 25364766 25364918 -256828746 + MIR SINE MIR 4 165 -97 264 229 157 0 chr1 25365172 25365242 -256828422 - L2 LINE L2 -1 3312 3232 287 297 0 27 chr1 25365840 25365951 -256827713 - MIR SINE MIR -97 165 58 197 307 14 14 chr1 25365970 25366110 -256827554 - L2 LINE L2 -261 3011 2872 453 250 13 0 chr1 25366314 25366434 -256827230 + MER20B DNA MER1_type 74 198 -21 2182 123 0 0 chr1 25367228 25367536 -256826128 + AluSx SINE Alu 1 308 -4 936 182 0 6 chr1 25367536 25367695 -256825969 + AluJo/FRAM SINE Alu 134 291 -21 29 0 0 0 chr1 25367704 25367733 -256825931 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 37 chr1 25367983 25368037 -256825627 + L2 LINE L2 3262 3313 0 635 280 48 31 chr1 25368123 25368350 -256825314 + MIR SINE MIR 4 233 -29 505 316 100 53 chr1 25368729 25369390 -256824274 - L2 LINE L2 -117 3155 2455 194 284 40 0 chr1 25369535 25369609 -256824055 - MIR SINE MIR -81 127 51 608 179 154 19 chr1 25370204 25370366 -256823298 + MIR SINE MIR 24 207 -55 243 310 0 23 chr1 25370762 25370849 -256822815 + MIR SINE MIR 39 123 -85 397 266 44 9 chr1 25371561 25371674 -256821990 - MIR3 SINE MIR -51 157 41 382 229 74 41 chr1 25372176 25372298 -256821366 + MIR SINE MIR 20 145 -63 378 292 82 6 chr1 25372981 25373152 -256820512 + MIR SINE MIR 73 256 -6 2132 103 17 0 chr1 25373448 25373750 -256819914 - AluSq SINE Alu -6 307 1 282 261 29 0 chr1 25373905 25373974 -256819690 - MIR SINE MIR -61 147 77 445 297 114 6 chr1 25374352 25374527 -256819137 + MIR SINE MIR 35 228 -34 304 170 0 0 chr1 25374934 25374987 -256818677 - MIR SINE MIR -107 155 103 302 245 55 96 chr1 25375462 25375587 -256818077 - MIR3 SINE MIR -61 147 67 1687 185 3 0 chr1 25375587 25375885 -256817779 - AluJo SINE Alu -13 299 1 302 245 55 96 chr1 25375885 25375940 -256817724 - MIR3 SINE MIR -141 67 11 504 222 31 7 chr1 25376510 25376652 -256817012 - MIR3 SINE MIR -46 162 17 346 252 118 0 chr1 25377066 25377185 -256816479 - MIR3 SINE MIR -3 205 73 297 331 8 8 chr1 25377579 25377700 -256815964 + L2 LINE L2 2937 3057 -215 563 214 107 19 chr1 25377940 25378099 -256815565 + MIR SINE MIR 20 192 -70 988 197 43 35 chr1 25378752 25379006 -256814658 + MIR SINE MIR 5 260 -2 230 340 20 0 chr1 25379148 25379248 -256814416 + MER117 DNA MER1_type 96 197 0 292 267 20 30 chr1 25379254 25379355 -256814309 - L2 LINE L2 -1 3271 3172 2119 123 7 0 chr1 25379480 25379790 -256813874 - AluSx SINE Alu 0 312 1 296 339 37 18 chr1 25380178 25380287 -256813377 + MIR SINE MIR 38 148 -114 191 200 22 22 chr1 25380310 25380355 -256813309 + L2 LINE L2 3208 3252 -20 375 121 0 0 chr1 25381113 25381171 -256812493 + (TCCA)n Simple_repeat Simple_repeat 2 59 0 261 303 26 0 chr1 25381171 25381247 -256812417 - L2 LINE L2 0 3272 3195 659 191 53 2 chr1 25381293 25381432 -256812232 + MIR SINE MIR 22 172 -36 342 226 235 0 chr1 25381530 25381645 -256812019 + MIR3 SINE MIR 20 161 -47 203 152 0 0 chr1 25381871 25381904 -256811760 + CT-rich Low_complexity Low_complexity 3 35 0 375 314 5 43 chr1 25382711 25382896 -256810768 + GA-rich Low_complexity Low_complexity 3 180 0 186 43 0 0 chr1 25383312 25383335 -256810329 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 208 283 0 0 chr1 25383341 25383401 -256810263 - L2 LINE L2 0 3272 3213 210 364 26 0 chr1 25383505 25383582 -256810082 + MIR SINE MIR 71 149 -59 1048 172 0 6 chr1 25383706 25383880 -256809784 - AluJo SINE Alu -15 297 125 363 333 0 0 chr1 25383880 25383970 -256809694 + L1MC4 LINE L1 6614 6703 -1339 * 377 237 79 72 chr1 25383904 25383989 -256809675 - L1MC4 LINE L1 -1339 6703 6615 1969 137 3 0 chr1 25383989 25384282 -256809382 - AluJb SINE Alu -18 294 1 377 237 79 72 chr1 25384282 25384335 -256809329 - L1MC4 LINE L1 -1427 6615 6564 233 346 45 0 chr1 25384506 25384639 -256809025 + L2 LINE L2 2988 3126 -146 315 296 0 0 chr1 25384977 25385065 -256808599 + MIR SINE MIR 63 150 -58 395 307 55 20 chr1 25386069 25386271 -256807393 + MIR SINE MIR 29 237 -25 256 310 78 0 chr1 25386441 25386557 -256807107 - MIR SINE MIR -114 148 24 231 88 0 0 chr1 25386924 25386958 -256806706 + (CA)n Simple_repeat Simple_repeat 1 34 0 425 241 65 0 chr1 25387922 25388030 -256805634 + MIR SINE MIR 39 153 -109 617 330 14 5 chr1 25388078 25388293 -256805371 - MIR SINE MIR -10 252 36 180 316 86 22 chr1 25388441 25388580 -256805084 - MIR SINE MIR -109 153 6 233 322 11 23 chr1 25388884 25388971 -256804693 - MIR SINE MIR -63 145 60 909 281 65 17 chr1 25389470 25389960 -256803704 - L2 LINE L2 -11 3302 2729 1007 219 154 41 chr1 25390008 25390450 -256803214 - L2 LINE L2 -1003 2311 1820 471 243 61 5 chr1 25390485 25390643 -256803021 + MIR SINE MIR 43 206 -56 470 298 110 11 chr1 25390690 25390881 -256802783 + MIR SINE MIR 40 249 -13 207 260 210 10 chr1 25390942 25391042 -256802622 + MIR SINE MIR 20 139 -123 639 297 14 24 chr1 25391383 25391595 -256802069 + L2 LINE L2 3093 3302 -11 373 255 34 43 chr1 25391831 25392009 -256801655 + MIR SINE MIR 18 188 -65 234 0 0 0 chr1 25392152 25392178 -256801486 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 223 293 0 61 chr1 25392220 25392302 -256801362 + MIR SINE MIR 40 116 -92 270 257 119 10 chr1 25392402 25392503 -256801161 + MIR SINE MIR 35 146 -62 309 258 195 8 chr1 25392882 25393010 -256800654 + MIR SINE MIR 21 172 -90 194 305 9 48 chr1 25393342 25393447 -256800217 + L2 LINE L2 3000 3100 -172 557 274 109 0 chr1 25393754 25393929 -256799735 + MIR SINE MIR 40 233 -29 268 323 169 27 chr1 25394168 25394428 -256799236 + L2 LINE L2 2976 3272 0 371 106 15 0 chr1 25395019 25395085 -256798579 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 1391 272 26 49 chr1 25395626 25396030 -256797634 + L1ME4a LINE L1 5483 5868 -253 847 144 0 58 chr1 25396030 25396169 -256797495 + FLAM_C SINE Alu 3 133 0 1391 272 26 49 chr1 25396169 25396415 -256797249 + L1ME4a LINE L1 5868 6118 -3 521 271 103 0 chr1 25396522 25396677 -256796987 - MIR SINE MIR -63 199 29 472 302 12 6 chr1 25397400 25397572 -256796092 + L2 LINE L2 2889 3061 -211 502 265 176 56 chr1 25397733 25398057 -256795607 + L2 LINE L2 2951 3313 0 2113 135 3 0 chr1 25398587 25398891 -256794773 + AluSx SINE Alu 1 305 -7 340 239 31 85 chr1 25398924 25399054 -256794610 + MER5A DNA MER1_type 66 188 -1 1334 190 209 38 chr1 25399438 25399883 -256793781 + MLT1F1 LTR MaLR 1 534 -33 1785 140 49 25 chr1 25399883 25400169 -256793495 - AluJo SINE Alu -16 296 4 1334 190 209 38 chr1 25400169 25400211 -256793453 + MLT1F1 LTR MaLR 534 567 0 533 360 135 20 chr1 25400226 25400626 -256793038 + L2 LINE L2 2826 3271 -1 332 302 48 8 chr1 25401353 25401549 -256792115 - MIR SINE MIR -5 257 4 279 195 126 11 chr1 25401565 25401652 -256792012 + MER113 DNA MER1_type? 3 99 -422 452 224 327 6 chr1 25401656 25401821 -256791843 + MIR SINE MIR 1 218 -44 726 277 67 32 chr1 25401843 25402128 -256791536 + MLT1I LTR MaLR 50 344 -65 192 292 0 0 chr1 25403318 25403366 -256790298 - L2 LINE L2 -86 3186 3139 237 333 50 10 chr1 25403667 25403766 -256789898 - L2 LINE L2 -79 3193 3091 184 250 40 40 chr1 25404010 25404086 -256789578 + L2 LINE L2 2905 2980 -292 236 243 40 40 chr1 25404393 25404467 -256789197 - MIR SINE MIR -108 154 81 492 231 45 8 chr1 25404511 25404645 -256789019 + MIR3 SINE MIR 23 161 -47 713 285 77 9 chr1 25405322 25405543 -256788121 - MIR SINE MIR -1 261 26 556 301 57 21 chr1 25405636 25405854 -256787810 + MIR SINE MIR 21 256 -6 344 310 62 16 chr1 25405853 25405982 -256787682 + MIR SINE MIR 120 254 -8 * 2449 59 0 0 chr1 25406294 25406600 -256787064 - AluY SINE Alu -5 306 1 387 342 75 35 chr1 25407517 25407716 -256785948 - L2 LINE L2 -3 3269 3063 423 293 86 0 chr1 25407867 25408007 -256785657 - MIR3 SINE MIR -49 159 8 262 272 37 25 chr1 25408744 25408825 -256784839 - MIR SINE MIR -55 153 72 259 300 0 22 chr1 25409212 25409302 -256784362 + MIR3 SINE MIR 4 91 -117 1674 121 0 16 chr1 25409361 25409632 -256784032 + AluSx SINE Alu 49 312 0 203 222 0 37 chr1 25409643 25409697 -256783967 + MIR SINE MIR 100 151 -111 390 272 39 0 chr1 25410263 25410366 -256783298 - MIR SINE MIR -78 184 78 354 361 79 41 chr1 25410412 25410753 -256782911 + L2 LINE L2 2881 3234 -38 467 266 22 35 chr1 25410809 25411035 -256782629 + MER113 DNA MER1_type? 2 224 -297 267 282 94 28 chr1 25411299 25411512 -256782152 - L2 LINE L2 -216 3056 2830 551 292 116 5 chr1 25412247 25412463 -256781201 - MIR SINE MIR -3 259 20 408 264 29 0 chr1 25412602 25412715 -256780949 + MIR SINE MIR 30 145 -63 270 261 29 0 chr1 25412785 25412854 -256780810 + L2 LINE L2 3169 3239 -33 227 230 52 126 chr1 25413107 25413242 -256780422 + L2 LINE L2 2949 3073 -199 477 320 55 62 chr1 25413249 25413524 -256780140 - L2 LINE L2 -2 3270 2998 535 320 128 5 chr1 25413615 25413818 -256779846 - MIR SINE MIR -33 229 2 181 278 83 68 chr1 25413859 25413992 -256779672 - L2 LINE L2 -467 2847 2713 430 171 18 90 chr1 25414397 25414508 -256779156 + MIR SINE MIR 90 192 -70 336 292 104 8 chr1 25414590 25414754 -256778910 - MIR SINE MIR -29 179 2 471 265 30 54 chr1 25414835 25415001 -256778663 - MIR SINE MIR -91 171 10 229 306 45 36 chr1 25415649 25415760 -256777904 - MIR SINE MIR -65 197 86 322 315 147 0 chr1 25415912 25416096 -256777568 - MIR SINE MIR -15 247 37 415 333 40 37 chr1 25416221 25416494 -256777170 + L2 LINE L2 2943 3216 -56 233 291 51 0 chr1 25416651 25416730 -256776934 - MIR SINE MIR -42 220 138 219 139 0 0 chr1 25416730 25416766 -256776898 + (CCCA)n Simple_repeat Simple_repeat 4 39 0 425 297 9 0 chr1 25416876 25416987 -256776677 - MIR SINE MIR -110 152 41 353 331 12 25 chr1 25417329 25417489 -256776175 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 186 246 0 0 chr1 25417491 25417552 -256776112 + (CCCA)n Simple_repeat Simple_repeat 4 64 0 283 319 11 11 chr1 25417773 25417864 -256775800 + (TCCA)n Simple_repeat Simple_repeat 2 92 0 240 306 34 102 chr1 25417864 25417939 -256775725 - L2 LINE L2 -3 3310 3248 1974 137 0 17 chr1 25417939 25418238 -256775426 + AluSx SINE Alu 8 301 -11 240 306 34 102 chr1 25418238 25418309 -256775355 - L2 LINE L2 -65 3248 3174 349 272 37 120 chr1 25418662 25418879 -256774785 - L2 LINE L2 -188 3084 2886 1614 166 13 23 chr1 25418925 25419232 -256774432 - AluJo SINE Alu -8 304 1 441 272 8 16 chr1 25419346 25419471 -256774193 - MIR SINE MIR -119 143 20 527 286 25 82 chr1 25420018 25420263 -256773401 - MIR SINE MIR -4 258 28 277 148 19 19 chr1 25421036 25421090 -256772574 + MIR SINE MIR 117 170 -92 485 245 158 33 chr1 25421269 25421453 -256772211 - MIR SINE MIR 0 262 56 2181 112 0 0 chr1 25422072 25422375 -256771289 - AluSx SINE Alu -9 303 1 2016 100 50 0 chr1 25422894 25423175 -256770489 - AluSx SINE Alu -16 296 2 434 271 124 40 chr1 25423196 25423373 -256770291 + MIR SINE MIR 70 261 -1 2243 214 47 20 chr1 25423484 25423974 -256769690 + MLT1D LTR MaLR 1 503 -2 539 212 18 0 chr1 25424348 25424461 -256769203 - MIR SINE MIR -79 183 69 320 335 47 14 chr1 25424877 25425081 -256768583 - MIR SINE MIR -1 261 52 308 257 71 0 chr1 25425117 25425230 -256768434 - MIR SINE MIR -55 153 33 247 367 31 0 chr1 25425765 25425863 -256767801 + MIR3 SINE MIR 97 197 -11 336 202 114 43 chr1 25426000 25426128 -256767536 - MIR SINE MIR -54 154 58 437 181 23 99 chr1 25426196 25426367 -256767297 - L1ME4a LINE L1 0 6121 5964 253 258 18 126 chr1 25426427 25426594 -256767070 + MER5B DNA MER1_type 17 165 -13 * 318 254 0 14 chr1 25426531 25426602 -256767062 - MER5A DNA MER1_type -105 84 15 369 271 133 13 chr1 25426617 25426768 -256766896 + MIR SINE MIR 20 188 -74 202 354 167 5 chr1 25427292 25427484 -256766180 + L2 LINE L2 2963 3185 -87 221 237 39 13 chr1 25427516 25427601 -256766063 + MIR SINE MIR 106 195 -13 316 324 29 0 chr1 25428355 25428460 -256765204 - MIR SINE MIR -62 146 39 227 235 74 0 chr1 25428460 25428541 -256765123 - L2 LINE L2 -308 3005 2919 939 94 35 0 chr1 25428599 25428770 -256764894 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 203 349 0 0 chr1 25428770 25428836 -256764828 - L2 LINE L2 -4 3268 3203 307 316 31 67 chr1 25428865 25429043 -256764621 - MIR3 SINE MIR -11 197 28 2704 23 0 0 chr1 25429422 25429729 -256763935 + AluY SINE Alu 1 307 -4 556 239 63 7 chr1 25430661 25430803 -256762861 - MIR SINE MIR -104 158 9 1718 166 0 49 chr1 25431263 25431588 -256762076 - AluJo SINE Alu -2 310 2 225 313 138 0 chr1 25431725 25431805 -256761859 + MIR SINE MIR 158 248 -14 2188 106 3 3 chr1 25432008 25432310 -256761354 + AluSx SINE Alu 1 302 -10 226 385 0 0 chr1 25432347 25432430 -256761234 + MIR SINE MIR 110 192 -70 626 267 36 6 chr1 25432971 25433136 -256760528 + MIR SINE MIR 5 174 -88 347 226 48 0 chr1 25433286 25433370 -256760294 + MIR3 SINE MIR 72 159 -49 2111 108 0 0 chr1 25433381 25433659 -256760005 + AluSq SINE Alu 1 278 -35 231 36 0 0 chr1 25433661 25433689 -256759975 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 264 170 0 0 chr1 25433756 25433803 -256759861 + MIR SINE MIR 91 137 -71 316 297 61 74 chr1 25434510 25434658 -256759006 - MIR SINE MIR -47 215 70 2220 104 0 7 chr1 25434863 25435172 -256758492 - AluSg SINE Alu -3 307 1 619 278 13 0 chr1 25435203 25435354 -256758310 - MIR SINE MIR -82 180 28 669 240 223 5 chr1 25435737 25436288 -256757376 + L2 LINE L2 2548 3217 -96 215 265 14 122 chr1 25436438 25436585 -256757079 + MIR SINE MIR 49 179 -83 637 307 123 45 chr1 25436815 25437340 -256756324 - L2 LINE L2 0 3272 2700 691 309 0 20 chr1 25438264 25438468 -256755196 + MIR SINE MIR 50 249 -13 189 0 0 0 chr1 25438482 25438503 -256755161 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 336 331 84 21 chr1 25438505 25438647 -256755017 - L2 LINE L2 -15 3298 3148 319 236 0 0 chr1 25438648 25438720 -256754944 - MIR SINE MIR -105 157 86 891 138 0 8 chr1 25438788 25438918 -256754746 + FLAM_C SINE Alu 2 130 -3 210 37 0 0 chr1 25438919 25438946 -256754718 + (T)n Simple_repeat Simple_repeat 1 27 0 209 146 55 0 chr1 25438946 25439001 -256754663 + A-rich Low_complexity Low_complexity 3 60 0 346 264 22 0 chr1 25439071 25439162 -256754502 + MIR SINE MIR 45 137 -71 261 297 155 0 chr1 25439690 25439838 -256753826 + L2 LINE L2 2830 3000 -272 389 281 61 73 chr1 25439931 25440008 -256753656 + MIR SINE MIR 83 159 -103 2404 93 0 3 chr1 25440008 25440321 -256753343 + AluSx SINE Alu 1 312 0 389 281 61 73 chr1 25440321 25440407 -256753257 + MIR SINE MIR 159 244 -18 270 200 11 21 chr1 25440442 25440537 -256753127 + GA-rich Low_complexity Low_complexity 1 94 0 268 271 12 0 chr1 25440648 25440733 -256752931 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 469 287 23 6 chr1 25441353 25441527 -256752137 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 275 347 135 24 chr1 25442100 25442270 -256751394 + MIR SINE MIR 26 214 -48 186 43 0 0 chr1 25442470 25442493 -256751171 + (CA)n Simple_repeat Simple_repeat 2 24 0 319 208 42 10 chr1 25442535 25442631 -256751033 + L1MC4 LINE L1 7928 8026 -16 462 310 23 0 chr1 25442666 25442795 -256750869 + MIR SINE MIR 30 161 -101 517 261 91 35 chr1 25442917 25443116 -256750548 - MIR SINE MIR -42 220 11 465 279 55 55 chr1 25443680 25443899 -256749765 + L2 LINE L2 2839 3057 -215 318 295 103 19 chr1 25443874 25444030 -256749634 - MIR3 SINE MIR -38 170 2 * 365 329 48 24 chr1 25444044 25444211 -256749453 + L3 LINE CR1 1218 1388 -189 270 204 191 39 chr1 25444190 25444293 -256749371 + MIR SINE MIR 39 154 -65 * 287 254 100 9 chr1 25444323 25444433 -256749231 + Charlie8 DNA MER1_type 4 123 -2294 883 154 0 0 chr1 25444433 25444569 -256749095 + FLAM_C SINE Alu 1 136 -7 1128 156 0 0 chr1 25444590 25444757 -256748907 + AluSg/x SINE Alu 109 275 -37 180 0 0 0 chr1 25444757 25444777 -256748887 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1724 188 10 7 chr1 25444814 25445122 -256748542 + AluJb SINE Alu 1 309 -3 387 268 21 0 chr1 25445128 25445225 -256748439 + Charlie8 DNA MER1_type 156 254 -2163 410 297 0 0 chr1 25445683 25445794 -256747870 - MIR SINE MIR -68 194 84 212 291 209 0 chr1 25445920 25446006 -256747658 - L2 LINE L2 -1 3312 3209 199 250 0 125 chr1 25445993 25446097 -256747567 - L2 LINE L2 -3213 101 11 * 790 289 128 7 chr1 25446468 25446876 -256746788 + MLT1H1 LTR MaLR 76 532 -23 454 351 7 7 chr1 25446966 25447117 -256746547 - MIR3 SINE MIR -12 196 46 641 207 67 0 chr1 25447206 25447370 -256746294 - Charlie8 DNA MER1_type -2170 247 73 311 315 107 27 chr1 25447389 25447538 -256746126 + MIR SINE MIR 41 201 -61 751 254 57 14 chr1 25447821 25448030 -256745634 + MIR SINE MIR 13 230 -32 2341 71 3 10 chr1 25448043 25448353 -256745311 + AluSq SINE Alu 2 309 -4 505 277 36 24 chr1 25448680 25448921 -256744743 - MIR SINE MIR -1 261 21 450 290 52 13 chr1 25449060 25449215 -256744449 - MIR SINE MIR -29 233 73 1985 125 0 23 chr1 25450091 25450395 -256743269 + AluSx SINE Alu 1 297 -15 191 302 151 47 chr1 25450837 25450943 -256742721 - MIR SINE MIR -132 130 14 614 303 110 0 chr1 25451641 25451895 -256741769 - L2 LINE L2 -21 3292 3011 239 286 65 26 chr1 25451906 25451983 -256741681 - L2 LINE L2 -61 3211 3132 214 347 36 31 chr1 25452044 25452237 -256741427 + L2 LINE L2 2690 2883 -431 246 293 0 85 chr1 25453209 25453315 -256740349 - MIR SINE MIR -65 197 101 260 255 69 20 chr1 25453328 25453430 -256740234 - MIR3 SINE MIR -34 174 68 244 294 140 9 chr1 25454437 25454544 -256739120 + MIR SINE MIR 45 164 -71 26 30 0 0 chr1 25454991 25455024 -256738640 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 25455197 25455238 -256738426 + GC_rich Low_complexity Low_complexity 1 41 0 39 22 0 0 chr1 25455284 25455330 -256738334 + GC_rich Low_complexity Low_complexity 1 46 0 35 92 0 0 chr1 25455491 25455589 -256738075 + GC_rich Low_complexity Low_complexity 1 98 0 199 137 20 20 chr1 25455636 25455687 -256737977 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 52 58 0 0 chr1 25455757 25455844 -256737820 + GC_rich Low_complexity Low_complexity 1 87 0 46 68 0 0 chr1 25455955 25456043 -256737621 + GC_rich Low_complexity Low_complexity 1 88 0 185 244 0 0 chr1 25457685 25457726 -256735938 - L2 LINE L2 -8 3305 3265 408 272 140 7 chr1 25457835 25458037 -256735627 - MIR SINE MIR -14 248 18 292 182 18 0 chr1 25458081 25458136 -256735528 - MIR SINE MIR -66 142 87 183 234 26 78 chr1 25458508 25458585 -256735079 + L2 LINE L2 3109 3181 -91 251 204 56 0 chr1 25458818 25458872 -256734792 - MIR SINE MIR -65 143 87 762 329 121 9 chr1 25458966 25459395 -256734269 - L2 LINE L2 -10 3303 2827 466 232 20 21 chr1 25459617 25459762 -256733902 + MIR3 SINE MIR 37 185 -23 6205 45 2 0 chr1 25460110 25460896 -256732768 - L1PA5 LINE L1 -7 6147 5360 353 256 12 0 chr1 25460899 25460981 -256732683 + MIR SINE MIR 44 126 -82 1433 154 77 35 chr1 25461017 25461328 -256732336 - MER33 DNA MER1_type 0 324 1 255 222 14 42 chr1 25461403 25461475 -256732189 - L2 LINE L2 -183 3089 3020 300 333 52 30 chr1 25461551 25461686 -256731978 - HAL1b LINE L1 -7 1341 1204 349 353 0 8 chr1 25461718 25461840 -256731824 - L1ME4a LINE L1 -206 5915 5795 591 259 79 0 chr1 25462314 25462503 -256731161 + MIR SINE MIR 42 245 -17 193 384 17 23 chr1 25462620 25462792 -256730872 + L2 LINE L2 2721 2891 -423 180 250 0 77 chr1 25463085 25463137 -256730527 + MIR SINE MIR 82 129 -133 970 195 6 0 chr1 25463139 25463303 -256730361 - FRAM SINE Alu -1 165 1 283 228 119 10 chr1 25463456 25463557 -256730107 + L2 LINE L2 3160 3271 -1 396 247 78 13 chr1 25463795 25463948 -256729716 - MIR SINE MIR -56 152 35 312 297 59 8 chr1 25463984 25464102 -256729562 + MIR3 SINE MIR 10 133 -75 195 146 0 0 chr1 25464651 25464692 -256728972 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 1983 148 0 16 chr1 25464960 25465277 -256728387 + AluJo SINE Alu 1 312 0 210 268 93 31 chr1 25465545 25465642 -256728022 - MIR3 SINE MIR -93 115 13 2060 126 7 0 chr1 25465859 25466153 -256727511 - AluSq SINE Alu -17 296 1 512 241 8 23 chr1 25466153 25466286 -256727378 - MIR3 SINE MIR -7 201 71 5540 48 4 6 chr1 25467111 25467795 -256725869 - L1PA8 LINE L1 -7 6165 5483 771 252 38 9 chr1 25467917 25468127 -256725537 + MIR SINE MIR 2 217 -45 339 130 0 0 chr1 25468272 25468326 -256725338 + (CA)n Simple_repeat Simple_repeat 2 55 0 286 328 46 23 chr1 25468345 25468476 -256725188 - MIR SINE MIR -1 261 128 300 303 46 9 chr1 25468572 25468681 -256724983 - MIR3 SINE MIR -28 180 68 205 309 48 12 chr1 25468942 25469026 -256724638 - L2 LINE L2 -63 3209 3123 1144 171 18 142 chr1 25469072 25469222 -256724442 + AluYb8 SINE Alu 1 168 -140 2269 92 0 0 chr1 25469222 25469517 -256724147 + AluSx SINE Alu 1 295 -17 1144 171 18 142 chr1 25469517 25469535 -256724129 + AluYb8 SINE Alu 168 187 -121 1723 137 7 0 chr1 25469535 25469805 -256723859 + AluSq SINE Alu 42 313 0 1144 171 18 142 chr1 25469805 25469974 -256723690 + AluYb8 SINE Alu 187 297 -11 426 306 0 30 chr1 25470138 25470272 -256723392 - MIR SINE MIR -111 151 22 1195 163 30 75 chr1 25470290 25470441 -256723223 + MER33 DNA MER1_type 6 162 -2423 819 113 7 71 chr1 25470441 25470582 -256723082 - FLAM_C SINE Alu 0 133 2 1195 163 30 75 chr1 25470582 25470679 -256722985 + MER33 DNA MER1_type 162 238 -2347 2113 120 7 0 chr1 25470679 25470988 -256722676 - AluSx SINE Alu -1 311 1 1195 163 30 75 chr1 25470988 25471069 -256722595 + MER33 DNA MER1_type 238 321 -3 1077 178 14 33 chr1 25471080 25471293 -256722371 + MER3 DNA MER1_type 1 209 0 286 302 21 10 chr1 25471414 25471510 -256722154 - MIR SINE MIR -143 119 23 2070 110 7 0 chr1 25471906 25472196 -256721468 - AluSg SINE Alu -18 292 1 534 247 103 0 chr1 25472296 25472442 -256721222 + MIR SINE MIR 50 210 -52 2340 209 52 15 chr1 25472542 25473077 -256720587 + MLT1F1 LTR MaLR 1 555 -12 503 295 58 6 chr1 25473084 25473240 -256720424 - MIR SINE MIR -59 203 40 1327 104 0 63 chr1 25473295 25473536 -256720128 - AluSx SINE Alu 0 310 85 516 189 27 14 chr1 25473554 25473702 -256719962 + Charlie5 DNA MER1_type 2433 2582 -30 421 185 12 12 chr1 25473713 25473794 -256719870 + MER3 DNA MER1_type 1 81 -128 621 119 0 0 chr1 25473794 25473878 -256719786 - AluSx SINE Alu -228 85 2 188 188 0 0 chr1 25473992 25474024 -256719640 + L3 LINE CR1 320 351 -1226 336 152 165 0 chr1 25474074 25474153 -256719511 - Zaphod DNA AcHobo 0 4031 3940 583 145 0 0 chr1 25474155 25474238 -256719426 + AluS SINE Alu 3 85 -227 410 204 10 0 chr1 25474246 25474344 -256719320 + (TATG)n Simple_repeat Simple_repeat 2 100 0 857 213 6 6 chr1 25474345 25474514 -256719150 + AluJb SINE Alu 135 303 -9 2757 188 57 3 chr1 25474514 25475147 -256718517 - Zaphod DNA AcHobo -81 3950 3284 2509 205 83 42 chr1 25475128 25475728 -256717936 - Zaphod DNA AcHobo -3349 682 58 * 181 272 239 0 chr1 25475728 25475820 -256717844 + MER5C DNA MER1_type 3 116 -208 1146 173 20 28 chr1 25476022 25476270 -256717394 - L1MB2 LINE L1 -1 6170 5925 2340 90 3 0 chr1 25476276 25476586 -256717078 - AluSp SINE Alu -1 312 2 427 220 40 0 chr1 25476587 25476687 -256716977 + MER5C DNA MER1_type 221 324 0 315 179 18 0 chr1 25476690 25476746 -256716918 - MER115 DNA AcHobo -636 57 1 277 270 50 20 chr1 25476746 25476846 -256716818 + MIR3 SINE MIR 104 206 -2 1049 169 0 0 chr1 25477328 25477506 -256716158 - AluSg/x SINE Alu -1 309 132 2342 48 0 7 chr1 25477506 25477796 -256715868 - AluY SINE Alu -10 301 14 394 192 41 0 chr1 25477841 25477914 -256715750 + Tigger4(Zombi) DNA MER2_type 2656 2731 0 286 315 55 20 chr1 25477937 25478083 -256715581 - L1ME4a LINE L1 -188 5933 5783 329 285 80 58 chr1 25478148 25478460 -256715204 - L1ME4a LINE L1 -483 5681 5363 291 323 113 0 chr1 25478461 25478594 -256715070 - MIR3 SINE MIR -28 180 33 412 226 0 144 chr1 25478694 25478792 -256714872 + MIR3 SINE MIR 79 151 -57 2137 123 0 3 chr1 25478792 25479100 -256714564 - AluSg SINE Alu -3 307 1 412 226 0 144 chr1 25479100 25479147 -256714517 + MIR3 SINE MIR 151 203 -5 303 288 0 113 chr1 25479180 25479340 -256714324 - MIR SINE MIR -49 213 72 520 286 94 82 chr1 25479450 25479863 -256713801 - L2 LINE L2 -19 3253 2836 246 260 79 94 chr1 25479893 25480020 -256713644 - L2 LINE L2 0 3313 3189 328 224 71 12 chr1 25480033 25480118 -256713546 - Charlie1 DNA MER1_type 0 2761 2672 1213 143 11 0 chr1 25480149 25480338 -256713326 + AluSg/x SINE Alu 115 305 -5 725 176 5 37 chr1 25480338 25480525 -256713139 - Charlie1 DNA MER1_type -117 2644 2464 278 203 162 0 chr1 25480523 25480597 -256713067 - Charlie1 DNA MER1_type -2669 92 7 * 633 259 204 5 chr1 25481587 25481803 -256711861 - MIR SINE MIR -1 261 3 242 289 108 56 chr1 25481839 25482088 -256711576 - L2 LINE L2 -157 3115 2854 217 366 23 19 chr1 25482174 25482390 -256711274 + L2 LINE L2 2299 2515 -799 294 29 0 0 chr1 25482937 25482972 -256710692 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2264 96 0 0 chr1 25483212 25483504 -256710160 - AluSx SINE Alu -20 292 1 1272 291 87 43 chr1 25483684 25484190 -256709474 - MLT1K LTR MaLR -46 542 15 407 227 34 25 chr1 25484269 25484388 -256709276 + MIR SINE MIR 25 144 -118 891 300 64 0 chr1 25484412 25484662 -256709002 + MLT1C LTR MaLR 200 465 -2 434 296 22 45 chr1 25484662 25484841 -256708823 + L2 LINE L2 3138 3312 -1 240 250 404 0 chr1 25485120 25485224 -256708440 + MIR SINE MIR 113 258 -4 1985 125 3 0 chr1 25485225 25485520 -256708144 + AluSx SINE Alu 1 296 -16 280 290 48 32 chr1 25485864 25485988 -256707676 + MIR3 SINE MIR 49 174 -34 393 277 15 23 chr1 25486087 25486217 -256707447 - MIR SINE MIR -62 146 18 311 352 14 0 chr1 25486755 25486897 -256706767 + GA-rich Low_complexity Low_complexity 1 144 0 189 281 0 18 chr1 25487163 25487220 -256706444 + MIR SINE MIR 86 141 -67 713 185 6 0 chr1 25487246 25487419 -256706245 + (TG)n Simple_repeat Simple_repeat 1 174 0 618 180 8 25 chr1 25487439 25487717 -256705947 + (TG)n Simple_repeat Simple_repeat 1 273 0 680 161 0 32 chr1 25487730 25487916 -256705748 + (TG)n Simple_repeat Simple_repeat 1 180 0 323 193 11 0 chr1 25487928 25488016 -256705648 + (TG)n Simple_repeat Simple_repeat 2 90 0 369 223 0 0 chr1 25488130 25488224 -256705440 + (TG)n Simple_repeat Simple_repeat 2 95 0 405 294 117 6 chr1 25488533 25488713 -256704951 - MIR SINE MIR 0 262 63 251 150 50 33 chr1 25488786 25488846 -256704818 + MIR SINE MIR 85 145 -63 339 220 124 0 chr1 25488949 25489044 -256704620 + MIR SINE MIR 58 163 -45 244 243 88 40 chr1 25489714 25489862 -256703802 - MIR3 SINE MIR -21 187 33 2106 114 0 7 chr1 25490111 25490410 -256703254 + AluSx SINE Alu 1 297 -15 933 169 103 0 chr1 25490530 25490725 -256702939 - MER20 DNA MER1_type -4 215 1 312 306 174 21 chr1 25491117 25491627 -256702037 - L2 LINE L2 -228 3044 2465 1271 202 32 16 chr1 25491781 25492033 -256701631 - MIR SINE MIR -4 258 3 518 319 27 22 chr1 25493590 25493775 -256699889 + MIR SINE MIR 60 245 -17 665 295 24 0 chr1 25494039 25494270 -256699394 + MIR SINE MIR 26 261 -1 692 288 107 0 chr1 25494280 25494495 -256699169 + MIR SINE MIR 18 255 -7 375 183 28 0 chr1 25494898 25494969 -256698695 - MIR3 SINE MIR -19 189 117 386 190 51 0 chr1 25495022 25495101 -256698563 - MIR SINE MIR -66 142 60 332 180 100 10 chr1 25495332 25495432 -256698232 - MIR SINE MIR -74 188 80 181 182 0 0 chr1 25495986 25496019 -256697645 - MIR SINE MIR -8 254 222 1911 161 0 0 chr1 25496031 25496335 -256697329 - AluJo SINE Alu -8 304 1 518 268 132 15 chr1 25496347 25496552 -256697112 - MIR SINE MIR -1 261 33 2024 139 0 0 chr1 25496727 25497021 -256696643 + AluJb SINE Alu 1 294 -18 2039 154 0 0 chr1 25497131 25497443 -256696221 + AluSx SINE Alu 1 312 0 645 147 0 0 chr1 25497450 25497559 -256696105 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 209 305 17 0 chr1 25497661 25497720 -256695944 + MIR SINE MIR 150 209 -53 352 311 40 27 chr1 25498281 25498429 -256695235 - MIR3 SINE MIR -49 159 10 210 37 0 0 chr1 25498590 25498617 -256695047 + (TG)n Simple_repeat Simple_repeat 2 28 0 514 265 154 12 chr1 25498954 25499116 -256694548 + MER5A DNA MER1_type 4 188 -1 756 284 70 0 chr1 25499158 25499359 -256694305 - MIR SINE MIR 0 262 48 199 360 14 68 chr1 25499567 25499714 -256693950 + MER5A DNA MER1_type 51 189 0 182 353 86 9 chr1 25499731 25499805 -256693859 - MIR SINE MIR -109 153 71 185 286 0 29 chr1 25499805 25499875 -256693789 + MIR3 SINE MIR 1 68 -140 1697 195 43 0 chr1 25499914 25500237 -256693427 + MER58B DNA MER1_type 5 341 0 673 199 143 0 chr1 25500245 25500406 -256693258 - MER5A DNA MER1_type 0 189 6 355 276 19 0 chr1 25500646 25500751 -256692913 + L1ME LINE L1 5575 5681 -440 256 344 33 0 chr1 25500802 25500892 -256692772 - MIR SINE MIR -158 104 12 434 322 169 6 chr1 25500931 25501108 -256692556 + MIR SINE MIR 21 226 -36 355 244 157 0 chr1 25501333 25501448 -256692216 + MIR SINE MIR 109 241 -21 245 294 141 0 chr1 25501498 25501590 -256692074 + MIR SINE MIR 47 151 -111 896 130 0 22 chr1 25501639 25501777 -256691887 + FLAM_C SINE Alu 1 135 -8 265 188 10 16 chr1 25501778 25501875 -256691789 + MER5A DNA MER1_type 29 189 0 243 227 15 15 chr1 25502200 25502266 -256691398 + MLT1K LTR MaLR 516 581 -7 2048 144 0 3 chr1 25502598 25502904 -256690760 + AluJb SINE Alu 1 305 -7 470 287 25 49 chr1 25503410 25503632 -256690032 + MIR SINE MIR 5 220 -42 185 317 37 24 chr1 25504033 25504115 -256689549 - L2 LINE L2 -3 3310 3228 365 339 107 0 chr1 25504667 25504844 -256688820 + MIR SINE MIR 46 241 -21 296 221 115 10 chr1 25504915 25505019 -256688645 - L2 LINE L2 0 3272 3158 202 221 52 78 chr1 25505022 25505099 -256688565 - L2 LINE L2 0 3272 3198 353 281 33 25 chr1 25505781 25505902 -256687762 + MIR3 SINE MIR 85 206 -2 328 284 37 37 chr1 25506030 25506192 -256687472 - MER117 DNA MER1_type -29 168 7 405 324 129 0 chr1 25506200 25506425 -256687239 + MIR SINE MIR 4 257 -5 339 255 96 0 chr1 25506474 25506568 -256687096 - MIR SINE MIR -70 192 90 289 376 52 3 chr1 25506633 25506798 -256686866 + MIR SINE MIR 42 212 -50 1021 129 2 12 chr1 25507139 25507638 -256686026 + (TCCA)n Simple_repeat Simple_repeat 1 493 0 785 168 6 0 chr1 25507654 25507833 -256685831 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 796 271 57 92 chr1 25507836 25508345 -256685319 - L2 LINE L2 0 3313 2823 289 291 38 0 chr1 25508465 25508544 -256685120 - MIR SINE MIR -107 155 74 193 349 36 12 chr1 25508716 25508769 -256684895 - L3 LINE CR1 -15 1562 1512 3125 153 19 75 chr1 25508769 25509166 -256684498 - L1MB5 LINE L1 0 6174 5756 4560 168 81 6 chr1 25509166 25509969 -256683695 + MER21B LTR ERV1 1 863 0 3125 153 19 75 chr1 25509969 25510011 -256683653 - L1MB5 LINE L1 -418 5756 5713 866 146 0 0 chr1 25510011 25510141 -256683523 - FLAM_A SINE Alu -3 130 1 3125 153 19 75 chr1 25510141 25510339 -256683325 - L1MB5 LINE L1 -461 5713 5572 193 349 36 12 chr1 25510339 25510368 -256683296 - L3 LINE CR1 -65 1512 1478 417 306 27 20 chr1 25510513 25510660 -256683004 - L3 LINE CR1 -83 1494 1347 361 244 32 62 chr1 25510847 25510993 -256682671 - MIR SINE MIR -63 145 51 473 301 57 14 chr1 25511352 25511565 -256682099 - MIR SINE MIR -9 253 34 201 382 0 0 chr1 25511637 25511713 -256681951 + MIR SINE MIR 185 260 -2 575 264 96 0 chr1 25511814 25511992 -256681672 + MIR SINE MIR 65 259 -3 315 293 252 7 chr1 25512413 25512560 -256681104 + MIR SINE MIR 34 216 -46 240 270 40 0 chr1 25512898 25512972 -256680692 - MIR SINE MIR -88 120 44 183 317 67 17 chr1 25513022 25513142 -256680522 + MER5A DNA MER1_type 42 167 -22 * 271 378 18 0 chr1 25513062 25513173 -256680491 - MER5A DNA MER1_type -74 115 3 310 288 136 15 chr1 25513646 25513778 -256679886 + MIR SINE MIR 22 169 -93 405 283 20 0 chr1 25514092 25514191 -256679473 - MIR3 SINE MIR -2 206 106 341 259 167 0 chr1 25514196 25514304 -256679360 - L2 LINE L2 -7 3306 3181 2186 110 0 16 chr1 25514778 25515088 -256678576 - AluSx SINE Alu -7 305 1 448 266 106 53 chr1 25515154 25515405 -256678259 + MIR SINE MIR 4 254 -8 471 215 0 0 chr1 25516102 25516223 -256677441 + (TG)n Simple_repeat Simple_repeat 2 122 0 323 370 0 22 chr1 25516223 25516361 -256677303 + L1MC4 LINE L1 6561 6695 -1347 351 252 0 0 chr1 25516381 25516492 -256677172 + (TG)n Simple_repeat Simple_repeat 1 111 0 333 380 0 0 chr1 25516493 25516593 -256677071 + L1MC4 LINE L1 6604 6703 -1339 324 337 0 22 chr1 25516573 25516665 -256676999 - L1MC4 LINE L1 -1339 6703 6614 * 279 203 0 0 chr1 25516682 25516741 -256676923 + (TG)n Simple_repeat Simple_repeat 2 60 0 197 250 23 0 chr1 25516812 25516856 -256676808 - L2 LINE L2 -95 3177 3133 300 303 84 22 chr1 25517115 25517293 -256676371 - L2 LINE L2 -213 3059 2871 276 304 0 0 chr1 25517730 25517809 -256675855 - L2 LINE L2 -54 3259 3181 406 220 0 0 chr1 25517849 25517940 -256675724 + MIR SINE MIR 171 261 -1 273 273 11 11 chr1 25517944 25518032 -256675632 + (TTCA)n Simple_repeat Simple_repeat 1 88 0 206 170 0 38 chr1 25519309 25519362 -256674302 + GA-rich Low_complexity Low_complexity 2 52 0 342 269 19 10 chr1 25519477 25519581 -256674083 + MIR SINE MIR 35 139 -69 329 276 39 45 chr1 25519628 25519784 -256673880 + Charlie8 DNA MER1_type 13 167 -2250 240 208 10 52 chr1 25519795 25519891 -256673773 + MER69A DNA AcHobo 30 121 -56 667 250 104 5 chr1 25519892 25520112 -256673552 - L1MD2 LINE L1 -34 6325 6084 357 204 0 11 chr1 25520126 25520214 -256673450 + MER69A DNA AcHobo 91 177 0 251 269 43 0 chr1 25520234 25520327 -256673337 + Charlie8 DNA MER1_type 192 288 -2129 425 244 111 15 chr1 25520345 25520480 -256673184 - MIR3 SINE MIR -50 158 11 226 316 59 26 chr1 25520688 25520813 -256672851 + MIR SINE MIR 30 155 -61 371 307 110 6 chr1 25521058 25521221 -256672443 + MIR SINE MIR 81 260 -2 778 249 73 10 chr1 25521742 25521947 -256671717 - MIR SINE MIR -3 259 42 210 397 25 8 chr1 25522014 25522135 -256671529 - MIR SINE MIR -55 207 85 201 39 0 0 chr1 25522443 25522469 -256671195 + (CAG)n Simple_repeat Simple_repeat 3 28 0 342 0 0 0 chr1 25523121 25523159 -256670505 + (TG)n Simple_repeat Simple_repeat 2 39 0 345 229 95 9 chr1 25523246 25523351 -256670313 - MIR SINE MIR -73 189 76 248 273 20 20 chr1 25524589 25524688 -256668976 + MIR SINE MIR 36 134 -74 186 43 0 0 chr1 25525312 25525335 -256668329 + (TG)n Simple_repeat Simple_repeat 1 23 0 185 305 34 17 chr1 25525758 25525817 -256667847 + MIR SINE MIR 8 67 -195 2361 82 0 13 chr1 25525842 25526158 -256667506 - AluSx SINE Alu 0 312 1 224 264 92 11 chr1 25526200 25526287 -256667377 + MIR SINE MIR 107 200 -62 * 736 251 72 14 chr1 25526286 25526493 -256667171 - MIR SINE MIR 0 262 44 2121 118 0 3 chr1 25526542 25526847 -256666817 + AluSq SINE Alu 1 304 -9 384 189 40 0 chr1 25527844 25527918 -256665746 + MIR SINE MIR 73 149 -113 478 254 58 0 chr1 25528296 25528442 -256665222 - MIR SINE MIR -65 143 43 283 246 18 18 chr1 25529102 25529216 -256664448 + (CA)n Simple_repeat Simple_repeat 1 114 0 213 94 0 0 chr1 25529331 25529363 -256664301 - L2 LINE L2 -5 3308 3277 361 328 67 12 chr1 25530272 25530483 -256663181 + MIR SINE MIR 16 234 -28 1914 145 0 7 chr1 25530529 25530825 -256662839 + AluJb SINE Alu 13 306 -6 8828 172 69 51 chr1 25530825 25532546 -256661118 + MER52A LTR ERV1 4 1755 0 291 341 65 0 chr1 25532635 25532758 -256660906 - L3 LINE CR1 -101 1476 1346 433 231 12 142 chr1 25533094 25533263 -256660401 + MIR3 SINE MIR 35 181 -27 2140 110 0 13 chr1 25533283 25533582 -256660082 - AluSx SINE Alu -17 295 1 2323 86 6 13 chr1 25533603 25533917 -256659747 - AluSx SINE Alu 0 312 1 212 250 75 12 chr1 25534016 25534096 -256659568 - MIR SINE MIR -62 146 62 631 258 3 97 chr1 25534129 25534427 -256659237 - LTR37B LTR ERV1 -2 466 197 684 254 14 5 chr1 25534454 25534663 -256659001 - LTR37B LTR ERV1 -252 216 6 2047 122 7 0 chr1 25535384 25535679 -256657985 + AluSp SINE Alu 1 297 -16 1305 220 81 63 chr1 25535798 25536293 -256657371 - L1ME3 LINE L1 -6 6156 5653 308 357 0 0 chr1 25536771 25536883 -256656781 + MIR SINE MIR 41 152 -110 219 114 0 0 chr1 25537015 25537050 -256656614 + (A)n Simple_repeat Simple_repeat 1 35 0 534 273 55 12 chr1 25537563 25537728 -256655936 - MIR SINE MIR -19 243 72 954 145 0 7 chr1 25537735 25537912 -256655752 - AluSx SINE Alu 0 310 135 2122 110 0 3 chr1 25537912 25538204 -256655460 - AluSc SINE Alu -18 291 1 301 286 92 8 chr1 25538388 25538507 -256655157 - MIR SINE MIR -45 217 89 318 141 248 50 chr1 25538512 25538633 -256655031 + MER53 DNA DNA 1 145 -44 219 213 98 16 chr1 25538956 25539017 -256654647 + MIR3 SINE MIR 90 155 -53 236 269 104 30 chr1 25539033 25539167 -256654497 - MER5A DNA MER1_type -22 167 24 351 274 92 7 chr1 25540488 25540669 -256652995 + MLT1I LTR MaLR 269 409 0 583 307 24 28 chr1 25541159 25541371 -256652293 + MIR SINE MIR 51 261 -1 * 630 303 46 34 chr1 25541321 25541559 -256652105 - MIR SINE MIR -14 248 8 1901 144 48 129 chr1 25541678 25541977 -256651687 - L1MB3 LINE L1 -1 6182 5945 1837 89 12 4 chr1 25541977 25542223 -256651441 - AluSx SINE Alu -63 249 2 1901 144 48 129 chr1 25542223 25542466 -256651198 - L1MB3 LINE L1 -238 5945 5684 932 94 0 8 chr1 25542798 25542810 -256650854 - AluSx SINE Alu -185 127 116 405 0 0 0 chr1 25542810 25542855 -256650809 + (TAG)n Simple_repeat Simple_repeat 1 45 0 932 94 0 8 chr1 25542855 25542970 -256650694 - AluSx SINE Alu -196 116 1 1577 182 7 17 chr1 25543063 25543200 -256650464 + AluJo SINE Alu 1 138 -174 2061 125 13 0 chr1 25543200 25543503 -256650161 + AluSq SINE Alu 3 309 -4 1577 182 7 17 chr1 25543503 25543661 -256650003 + AluJo SINE Alu 138 293 -19 811 323 5 0 chr1 25543878 25544101 -256649563 + MIR SINE MIR 39 262 0 185 291 175 10 chr1 25544680 25544783 -256648881 + MIR SINE MIR 20 139 -69 2069 120 0 0 chr1 25544843 25545151 -256648513 + AluSx SINE Alu 1 308 0 228 236 170 38 chr1 25545291 25545397 -256648267 + MIR3 SINE MIR 15 134 -74 320 264 0 0 chr1 25545524 25545596 -256648068 + MIR SINE MIR 80 151 -111 2294 96 0 0 chr1 25545648 25545974 -256647690 + AluSx SINE Alu 1 326 0 395 215 47 116 chr1 25546868 25547040 -256646624 + L1ME3 LINE L1 5968 6127 -35 381 219 37 0 chr1 25547176 25547258 -256646406 - MIR SINE MIR -70 192 108 202 268 0 18 chr1 25547274 25547330 -256646334 + G-rich Low_complexity Low_complexity 5 59 0 369 292 62 0 chr1 25547417 25547530 -256646134 - MIR SINE MIR -118 144 25 221 233 0 9 chr1 25548545 25548621 -256645043 + A-rich Low_complexity Low_complexity 1 75 0 241 208 19 0 chr1 25548699 25548752 -256644912 + MIR SINE MIR 74 127 -81 326 345 6 51 chr1 25548892 25549069 -256644595 - MIR3 SINE MIR -24 184 16 468 333 48 14 chr1 25549152 25549362 -256644302 + MIR SINE MIR 13 229 -33 290 288 73 9 chr1 25549865 25549992 -256643672 + MIR SINE MIR 9 143 -65 537 226 15 30 chr1 25550147 25550280 -256643384 - L2 LINE L2 0 3313 3183 533 229 0 0 chr1 25550364 25550485 -256643179 + MIR SINE MIR 40 145 -63 222 37 0 0 chr1 25550856 25550883 -256642781 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 206 333 43 0 chr1 25550897 25550966 -256642698 - L2 LINE L2 -6 3266 3195 198 315 55 14 chr1 25550971 25551044 -256642620 - L2 LINE L2 -4 3268 3193 2257 107 0 0 chr1 25551112 25551412 -256642252 + AluSc SINE Alu 1 300 -9 403 288 19 0 chr1 25552091 25552251 -256641413 + (CAGA)n Simple_repeat Simple_repeat 3 165 0 387 315 0 0 chr1 25552767 25552878 -256640786 - MIR SINE MIR -72 190 80 426 326 156 18 chr1 25553388 25553612 -256640052 - MIR SINE MIR 0 262 8 687 256 26 21 chr1 25554022 25554213 -256639451 + MIR SINE MIR 7 198 -64 409 335 147 20 chr1 25554286 25554579 -256639085 - L3 LINE CR1 -129 1448 1119 273 233 17 0 chr1 25555138 25555198 -256638466 + MIR SINE MIR 94 154 -108 228 256 35 12 chr1 25555597 25555683 -256637981 + (CA)n Simple_repeat Simple_repeat 2 89 0 234 0 0 0 chr1 25555686 25555712 -256637952 + (T)n Simple_repeat Simple_repeat 1 26 0 771 174 0 30 chr1 25555737 25555869 -256637795 - AluJb SINE Alu -178 134 7 1858 170 0 13 chr1 25556150 25556586 -256637078 + AluJo SINE Alu 5 436 0 814 304 9 5 chr1 25556780 25556994 -256636670 + MIR SINE MIR 35 249 -13 418 303 42 14 chr1 25557846 25557988 -256635676 - MIR SINE MIR -33 229 84 260 363 101 56 chr1 25558071 25558498 -256635166 - L2 LINE L2 -18 3254 2809 1396 197 72 14 chr1 25558526 25558646 -256635018 + AluJb SINE Alu 1 113 -199 262 0 26 26 chr1 25558646 25558685 -256634979 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1396 197 72 14 chr1 25558685 25558854 -256634810 + AluJb SINE Alu 113 307 -5 790 319 62 3 chr1 25558866 25559204 -256634460 - L2 LINE L2 -455 2859 2502 549 114 23 0 chr1 25559393 25559481 -256634183 - L1MC2 LINE L1 -2 6342 6253 1149 315 72 22 chr1 25559745 25560035 -256633629 - L1ME3 LINE L1 -215 5947 5673 1381 237 101 14 chr1 25560035 25560453 -256633211 + LTR16A1 LTR ERVL 2 455 -2 1149 315 72 22 chr1 25560453 25561537 -256632127 - L1ME3 LINE L1 -489 5673 4507 231 322 75 98 chr1 25561600 25561895 -256631769 + L2 LINE L2 2981 3268 -4 204 333 173 7 chr1 25562041 25562191 -256631473 + MIR SINE MIR 34 208 -54 310 302 60 17 chr1 25563689 25563805 -256629859 + MIR3 SINE MIR 41 161 -47 894 146 23 7 chr1 25566176 25566480 -256627184 + CT-rich Low_complexity Low_complexity 1 309 0 859 151 0 27 chr1 25566507 25566692 -256626972 + CT-rich Low_complexity Low_complexity 1 180 0 223 118 78 0 chr1 25566711 25566762 -256626902 + CT-rich Low_complexity Low_complexity 3 57 0 881 180 0 6 chr1 25566775 25566953 -256626711 + CT-rich Low_complexity Low_complexity 2 178 0 416 291 14 80 chr1 25567823 25568036 -256625628 - MIR SINE MIR -13 249 51 390 245 58 32 chr1 25569529 25569593 -256624071 + MER117 DNA MER1_type 2 63 -134 1930 128 14 0 chr1 25569593 25569924 -256623740 + AluSx SINE Alu 1 335 0 390 245 58 32 chr1 25569924 25570013 -256623651 + MER117 DNA MER1_type 63 160 -37 261 299 13 0 chr1 25570767 25570844 -256622820 + MIR SINE MIR 67 144 -64 543 322 57 9 chr1 25570926 25571137 -256622527 + MIR SINE MIR 10 230 -32 378 351 40 17 chr1 25571657 25571831 -256621833 - MIR SINE MIR -44 218 41 733 213 53 12 chr1 25572003 25572172 -256621492 - MER5A DNA MER1_type 0 189 14 969 114 8 0 chr1 25572283 25572415 -256621249 + AluSq/x SINE Alu 1 133 -179 2152 109 0 0 chr1 25572420 25572714 -256620950 + AluSg SINE Alu 1 294 -16 340 318 62 4 chr1 25574054 25574240 -256619424 + MIR SINE MIR 1 192 -62 327 370 118 14 chr1 25574486 25574902 -256618762 - L2 LINE L2 -25 3288 2830 1719 165 14 0 chr1 25575031 25575316 -256618348 + AluJb SINE Alu 2 290 -22 976 96 0 0 chr1 25575318 25575443 -256618221 - AluJo/FLAM SINE Alu -187 125 1 458 321 211 22 chr1 25575694 25576233 -256617431 - L2 LINE L2 -985 2329 1689 234 361 14 0 chr1 25576374 25576446 -256617218 + L2 LINE L2 3241 3313 0 300 267 105 19 chr1 25576516 25576621 -256617043 + MIR SINE MIR 30 143 -119 572 204 70 14 chr1 25576944 25577086 -256616578 - MIR SINE MIR -11 251 102 331 339 18 0 chr1 25580202 25580311 -256613353 - MIR SINE MIR -107 155 45 211 341 114 0 chr1 25580603 25580735 -256612929 - MER5A DNA MER1_type -5 184 38 190 303 123 8 chr1 25580913 25581035 -256612629 - L2 LINE L2 0 3272 3137 345 314 31 106 chr1 25581304 25581727 -256611937 + L2 LINE L2 2855 3245 -27 469 284 75 40 chr1 25582738 25582939 -256610725 + MIR SINE MIR 22 229 -33 311 320 123 0 chr1 25582945 25583067 -256610597 - MIR SINE MIR -82 180 44 410 226 85 9 chr1 25583877 25583983 -256609681 + MIR SINE MIR 30 143 -65 270 330 9 19 chr1 25584948 25585054 -256608610 + MIR SINE MIR 48 152 -56 329 239 133 62 chr1 25585317 25585477 -256608187 + MIR SINE MIR 4 188 -74 425 279 118 0 chr1 25585717 25585853 -256607811 + MIR SINE MIR 59 210 -52 2355 86 3 3 chr1 25586112 25586425 -256607239 + AluSq SINE Alu 1 313 0 260 292 15 0 chr1 25587029 25587094 -256606570 + (CACG)n Simple_repeat Simple_repeat 3 68 0 499 243 0 17 chr1 25587094 25587275 -256606389 + (CATA)n Simple_repeat Simple_repeat 1 178 0 411 289 0 0 chr1 25587246 25587419 -256606245 + (CA)n Simple_repeat Simple_repeat 2 174 0 * 274 154 0 0 chr1 25587422 25587474 -256606190 - MER4-int LTR ERV1 -5436 1162 1111 250 167 42 0 chr1 25587476 25587524 -256606140 + (CATA)n Simple_repeat Simple_repeat 4 53 0 522 275 2 0 chr1 25587529 25588041 -256605623 + (CA)n Simple_repeat Simple_repeat 1 513 0 431 275 0 11 chr1 25588054 25588236 -256605428 + (CA)n Simple_repeat Simple_repeat 1 180 0 680 225 0 3 chr1 25588299 25588662 -256605002 + (CA)n Simple_repeat Simple_repeat 1 361 0 438 219 0 0 chr1 25588686 25588791 -256604873 + (CA)n Simple_repeat Simple_repeat 1 105 0 1013 198 39 0 chr1 25589114 25589321 -256604343 + MIR SINE MIR 13 227 -35 183 280 40 27 chr1 25590388 25590463 -256603201 - L2 LINE L2 -40 3273 3198 289 344 0 11 chr1 25590711 25590804 -256602860 + L2 LINE L2 2665 2756 -558 4384 166 39 15 chr1 25590983 25591300 -256602364 + L1MB3 LINE L1 5178 5486 -697 2173 113 0 0 chr1 25591300 25591591 -256602073 + AluSx SINE Alu 1 291 -21 4384 166 39 15 chr1 25591591 25592255 -256601409 + L1MB3 LINE L1 5486 6183 0 2337 68 0 3 chr1 25592272 25592567 -256601097 + AluY SINE Alu 1 294 -17 397 293 27 14 chr1 25593113 25593260 -256600404 + MIR SINE MIR 102 250 -12 263 290 29 80 chr1 25593814 25593951 -256599713 + MIR SINE MIR 69 197 -62 275 247 90 11 chr1 25594204 25594293 -256599371 - MIR SINE MIR -104 158 63 183 345 45 55 chr1 25594412 25594500 -256599164 - L3b LINE CR1 -6 1577 1489 1671 152 85 0 chr1 25594500 25594783 -256598881 - AluJb SINE Alu -5 307 1 183 345 45 55 chr1 25594783 25594804 -256598860 - L3b LINE CR1 -94 1489 1469 * 234 258 15 15 chr1 25594784 25594850 -256598814 + MER5A DNA MER1_type 47 112 -77 510 289 15 43 chr1 25595055 25595269 -256598395 + MIR SINE MIR 6 217 -45 366 326 0 0 chr1 25596138 25596313 -256597351 + (TG)n Simple_repeat Simple_repeat 2 176 0 532 294 68 4 chr1 25596396 25596630 -256597034 - MIR SINE MIR -1 261 11 325 118 15 44 chr1 25597053 25597121 -256596543 + MIR SINE MIR 72 137 -71 607 259 17 7 chr1 25597540 25597721 -256595943 + MIR SINE MIR 2 191 -58 186 346 62 0 chr1 25597789 25597870 -256595794 + L2 LINE L2 3176 3261 -11 521 325 50 10 chr1 25597888 25598088 -256595576 - MIR SINE MIR -2 260 53 243 248 291 21 chr1 25598245 25598386 -256595278 + MIR SINE MIR 8 186 -76 274 268 43 73 chr1 25598523 25598687 -256594977 + MIR3 SINE MIR 39 197 -11 270 248 29 86 chr1 25599967 25600072 -256593592 + MIR SINE MIR 95 193 -69 266 212 25 25 chr1 25602751 25602869 -256590795 + (CCG)n Simple_repeat Simple_repeat 1 118 0 39 38 0 0 chr1 25602893 25602946 -256590718 + GC_rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr1 25603076 25603096 -256590568 + (CCG)n Simple_repeat Simple_repeat 2 21 0 365 268 41 0 chr1 25603665 25603762 -256589902 + MIR SINE MIR 80 180 -82 450 313 130 19 chr1 25604218 25604426 -256589238 - MIR SINE MIR -12 250 20 315 317 25 17 chr1 25604499 25604619 -256589045 + L3 LINE CR1 1412 1532 -45 264 269 99 14 chr1 25604688 25604829 -256588835 - Charlie8 DNA MER1_type -2196 221 69 1811 146 19 44 chr1 25604982 25605297 -256588367 + AluJb SINE Alu 1 307 -5 281 306 99 8 chr1 25606155 25606276 -256587388 + L2 LINE L2 3141 3272 0 480 237 35 9 chr1 25606657 25606771 -256586893 + MIR SINE MIR 100 216 -46 287 172 26 86 chr1 25607475 25607555 -256586109 - Charlie5 DNA MER1_type -5 2580 2508 2351 105 0 0 chr1 25607555 25607868 -256585796 + AluSq SINE Alu 1 313 0 287 172 26 86 chr1 25607868 25607903 -256585761 - Charlie5 DNA MER1_type -77 2508 2472 365 317 78 14 chr1 25607947 25608089 -256585575 - L2 LINE L2 0 3313 3163 2133 120 0 7 chr1 25608178 25608477 -256585187 - AluSq SINE Alu -16 297 1 185 235 118 0 chr1 25608557 25608608 -256585056 - L3 LINE CR1 -3 1574 1518 484 287 34 106 chr1 25609449 25609864 -256583800 + L2 LINE L2 2417 2801 -513 279 208 0 0 chr1 25610326 25610379 -256583285 + MIR SINE MIR 66 118 -90 541 265 38 43 chr1 25610448 25610633 -256583031 - MIR SINE MIR -64 198 15 434 272 56 31 chr1 25611008 25611170 -256582494 + MIR SINE MIR 23 188 -74 330 26 0 0 chr1 25611410 25611463 -256582201 + (TG)n Simple_repeat Simple_repeat 1 92 0 330 26 0 0 chr1 25611463 25611502 -256582162 + (TG)n Simple_repeat Simple_repeat 1 39 0 235 288 144 15 chr1 25612083 25612215 -256581449 - L2 LINE L2 -3 3269 3121 419 218 50 10 chr1 25612314 25612415 -256581249 - MIR SINE MIR -88 120 16 248 319 0 0 chr1 25612670 25612742 -256580922 - MIR SINE MIR -141 121 50 354 263 21 100 chr1 25613649 25613889 -256579775 + L2 LINE L2 2883 3103 -169 349 215 86 11 chr1 25615293 25615386 -256578278 + MIR SINE MIR 43 142 -66 189 239 22 0 chr1 25616112 25616158 -256577506 + L2 LINE L2 3266 3312 -1 389 187 13 0 chr1 25616982 25617057 -256576607 + MIR SINE MIR 88 163 -99 837 162 15 0 chr1 25617057 25617193 -256576471 + AluSq/x SINE Alu 1 138 -174 310 222 0 0 chr1 25617195 25617258 -256576406 + MIR SINE MIR 162 224 -38 2153 91 0 3 chr1 25617258 25617544 -256576120 + AluSx SINE Alu 1 285 -27 390 291 199 15 chr1 25617662 25617858 -256575806 - MIR SINE MIR -3 259 28 841 191 4 4 chr1 25618409 25618961 -256574703 + GA-rich Low_complexity Low_complexity 1 551 0 541 198 6 6 chr1 25618982 25619139 -256574525 + GA-rich Low_complexity Low_complexity 1 157 0 325 347 44 49 chr1 25619140 25619365 -256574299 + L1MEd LINE L1 955 1178 -4941 414 0 0 0 chr1 25619931 25619977 -256573687 + (CA)n Simple_repeat Simple_repeat 2 47 0 226 229 16 16 chr1 25620038 25620099 -256573565 + MIR SINE MIR 98 158 -104 24 0 0 0 chr1 25620101 25620125 -256573539 + AT_rich Low_complexity Low_complexity 1 24 0 1085 158 0 0 chr1 25620145 25620309 -256573355 - FRAM SINE Alu -12 164 1 270 325 0 0 chr1 25620313 25620393 -256573271 + MIR SINE MIR 151 230 -32 381 206 0 0 chr1 25620737 25620810 -256572854 + MER3 DNA MER1_type 40 112 -97 486 235 8 0 chr1 25620811 25620930 -256572734 + MER3 DNA MER1_type 2505 2624 0 287 294 22 0 chr1 25620939 25621031 -256572633 - MIR3 SINE MIR -14 194 101 359 314 105 0 chr1 25621561 25621714 -256571950 + MIR SINE MIR 19 187 -75 493 301 111 65 chr1 25621761 25621904 -256571760 - L2 LINE L2 -2 3311 3176 2146 114 0 3 chr1 25621904 25622201 -256571463 - AluSx SINE Alu -16 296 1 493 301 111 65 chr1 25622201 25622336 -256571328 - L2 LINE L2 -137 3176 3020 398 276 89 0 chr1 25622400 25622523 -256571141 + MIR SINE MIR 31 164 -98 339 245 43 58 chr1 25622680 25622819 -256570845 - L2 LINE L2 -223 3049 2913 445 201 158 14 chr1 25623327 25623466 -256570198 + MIR SINE MIR 49 207 -55 279 399 29 7 chr1 25623549 25623687 -256569977 - MIR3 SINE MIR -66 142 2 260 299 88 48 chr1 25623979 25624126 -256569538 + L2 LINE L2 3073 3225 -47 399 218 95 28 chr1 25624178 25624248 -256569416 - MER106B DNA MER1_type -2 1057 993 2282 112 0 0 chr1 25624248 25624560 -256569104 - AluSx SINE Alu 0 312 1 399 218 95 28 chr1 25624560 25624677 -256568987 - MER106B DNA MER1_type -66 993 28 223 318 34 23 chr1 25624928 25625016 -256568648 - MIR3 SINE MIR -11 197 109 521 262 77 32 chr1 25625327 25625548 -256568116 + L2 LINE L2 2297 2527 -787 442 182 101 0 chr1 25625580 25625679 -256567985 - Cheshire DNA MER1_type -1655 765 657 1273 273 140 12 chr1 25625679 25626274 -256567390 + L2 LINE L2 2617 3294 -19 1863 134 16 29 chr1 25626427 25626733 -256566931 + AluJb SINE Alu 2 303 -9 408 222 38 48 chr1 25626738 25626911 -256566753 + L1MB2 LINE L1 5890 6049 -135 813 166 43 6 chr1 25626912 25627075 -256566589 + L1MB3 LINE L1 6012 6180 -3 352 294 73 7 chr1 25627810 25627946 -256565718 - MIR SINE MIR -116 146 2 227 267 221 0 chr1 25628457 25628543 -256565121 - MIR SINE MIR -69 139 35 200 276 295 0 chr1 25628552 25628657 -256565007 - MIR3 SINE MIR -4 204 69 279 228 68 0 chr1 25629072 25629158 -256564506 + MIR SINE MIR 66 156 -62 192 292 62 15 chr1 25629424 25629489 -256564175 + MIR SINE MIR 25 92 -170 772 221 149 11 chr1 25629514 25629695 -256563969 - MER3 DNA MER1_type 0 209 4 245 360 68 31 chr1 25629872 25630033 -256563631 + MIR SINE MIR 52 218 -44 273 352 67 43 chr1 25630050 25630260 -256563404 + MIR SINE MIR 2 216 -46 2568 79 20 14 chr1 25630483 25630838 -256562826 + L1PA13 LINE L1 5807 6163 0 708 305 71 4 chr1 25631486 25631671 -256561993 + MIR SINE MIR 6 212 -50 2067 133 0 13 chr1 25631671 25631980 -256561684 + AluSx SINE Alu 1 305 -7 708 305 71 4 chr1 25631980 25632033 -256561631 + MIR SINE MIR 212 260 -2 2158 109 7 7 chr1 25632042 25632345 -256561319 - AluSx SINE Alu -9 303 1 183 80 0 0 chr1 25632396 25632421 -256561243 + (CCAA)n Simple_repeat Simple_repeat 3 27 0 250 283 14 101 chr1 25632597 25632735 -256560929 - L2 LINE L2 -5 3267 3142 207 285 190 19 chr1 25634621 25634724 -256558940 - MIR SINE MIR -107 101 5 431 282 48 77 chr1 25635441 25635650 -256558014 - MIR SINE MIR -57 205 3 1737 139 17 43 chr1 25637715 25638016 -256555648 + AluJo SINE Alu 1 293 -19 713 183 104 37 chr1 25642445 25642609 -256551055 - MER69A DNA AcHobo -2 175 1 303 241 232 0 chr1 25642655 25642767 -256550897 + HsTC2 DNA Tc2 1 138 -1760 1665 205 135 9 chr1 25642768 25643300 -256550364 + HsTC2 DNA Tc2 1265 1863 -35 2508 49 0 13 chr1 25643300 25643605 -256550059 + AluY SINE Alu 1 301 -10 1153 129 0 6 chr1 25643617 25643787 -256549877 + AluSg/x SINE Alu 132 300 -10 584 265 34 0 chr1 25643917 25644064 -256549600 - MIR SINE MIR -79 183 32 259 220 0 0 chr1 25644323 25644373 -256549291 + MIR SINE MIR 4 53 -209 385 303 0 0 chr1 25644374 25644473 -256549191 + MIR SINE MIR 163 261 -1 * 404 363 38 14 chr1 25644398 25644610 -256549054 - MIR SINE MIR 0 262 46 474 354 101 13 chr1 25645227 25645464 -256548200 - MIR SINE MIR 0 262 5 716 225 51 34 chr1 25646955 25647191 -256546473 - MIR SINE MIR 0 262 23 187 301 53 35 chr1 25647802 25647915 -256545749 + L2 LINE L2 3156 3270 -2 674 305 16 28 chr1 25648096 25648345 -256545319 - MIR SINE MIR 0 262 17 180 0 0 0 chr1 25648350 25648370 -256545294 + (CTGTG)n Simple_repeat Simple_repeat 3 22 0 1436 267 73 103 chr1 25650033 25650236 -256543428 + L2 LINE L2 2122 2330 -983 247 120 60 0 chr1 25650236 25650286 -256543378 + MLT1D LTR MaLR 453 505 0 1436 267 73 103 chr1 25650286 25650736 -256542928 + L2 LINE L2 2330 2792 -521 2478 170 100 0 chr1 25650736 25651195 -256542469 + MLT1D LTR MaLR 1 505 0 1436 267 73 103 chr1 25651195 25651695 -256541969 + L2 LINE L2 2792 3304 -9 1045 304 136 10 chr1 25651666 25652310 -256541354 - L2 LINE L2 0 3313 2592 * 243 122 0 20 chr1 25652655 25652704 -256540960 + MADE1 DNA Mariner 33 80 0 2010 98 0 4 chr1 25652824 25653089 -256540575 - AluY SINE Alu -4 307 44 1347 123 36 5 chr1 25653106 25653325 -256540339 - L1MA1 LINE L1 -2 6300 6075 189 352 39 16 chr1 25654111 25654239 -256539425 - MIR SINE MIR -15 247 117 304 348 34 26 chr1 25656701 25656852 -256536812 + MIR SINE MIR 37 192 -65 2243 116 0 7 chr1 25656902 25657212 -256536452 + AluSx SINE Alu 1 308 -4 216 313 0 15 chr1 25658357 25658424 -256535240 + CT-rich Low_complexity Low_complexity 1 66 0 266 226 0 108 chr1 25659075 25659168 -256534496 + L1ME LINE L1 5599 5681 -440 731 272 63 8 chr1 25659214 25659453 -256534211 - MIR SINE MIR -6 256 5 510 284 16 0 chr1 25661713 25661840 -256531824 + MIR SINE MIR 23 151 -111 571 261 86 21 chr1 25661963 25662197 -256531467 + MIR SINE MIR 10 258 -4 195 42 0 0 chr1 25662919 25662943 -256530721 + (TG)n Simple_repeat Simple_repeat 1 24 0 908 247 53 18 chr1 25663238 25663521 -256530143 + L1ME4a LINE L1 5534 5826 -295 597 154 0 0 chr1 25663794 25663904 -256529760 + (TCCA)n Simple_repeat Simple_repeat 4 113 0 398 304 159 14 chr1 25665288 25665508 -256528156 + L2 LINE L2 3018 3269 -3 1670 215 91 48 chr1 25667104 25667622 -256526042 + MLT1F1 LTR MaLR 4 567 0 336 216 141 7 chr1 25668685 25668819 -256524845 - MIR SINE MIR -79 183 33 241 119 0 24 chr1 25668945 25668987 -256524677 + L2 LINE L2 3268 3308 -5 829 173 8 53 chr1 25669456 25669711 -256523953 + MLT2B3 LTR ERVL 225 370 -83 532 250 79 38 chr1 25669733 25669973 -256523691 + MLT1K LTR MaLR 293 542 -46 313 274 24 0 chr1 25670603 25670687 -256522977 - MIR SINE MIR -122 140 55 2242 97 0 14 chr1 25670735 25671058 -256522606 + AluSx SINE Alu 1 319 0 221 340 60 0 chr1 25671748 25671848 -256521816 + L2 LINE L2 3162 3267 -5 413 327 26 13 chr1 25671974 25672130 -256521534 + MER5A DNA MER1_type 4 161 -28 480 245 82 0 chr1 25672460 25672619 -256521045 - MIR SINE MIR -16 246 75 1082 188 49 163 chr1 25672619 25673075 -256520589 + L1ME1 LINE L1 5754 6160 -6 183 42 0 0 chr1 25673095 25673119 -256520545 + (GA)n Simple_repeat Simple_repeat 1 24 0 539 310 78 12 chr1 25674309 25674554 -256519110 + MIR SINE MIR 2 262 0 2305 85 0 4 chr1 25675356 25675637 -256518027 + AluSg SINE Alu 1 280 -30 213 39 0 0 chr1 25675642 25675668 -256517996 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 355 346 28 11 chr1 25676823 25677005 -256516659 - MIR SINE MIR 0 262 78 2504 257 110 35 chr1 25677108 25678370 -256515294 + L2 LINE L2 1938 3313 0 289 359 125 33 chr1 25678616 25679103 -256514561 - L2 LINE L2 -436 2878 2347 7184 156 62 25 chr1 25679300 25679516 -256514148 + L1MC1 LINE L1 3 209 -6217 2073 120 3 0 chr1 25679516 25679837 -256513827 + AluSx SINE Alu 1 322 0 7184 156 62 25 chr1 25679837 25681027 -256512637 + L1MC1 LINE L1 209 1463 -4963 5936 224 68 15 chr1 25681125 25683453 -256510211 + L1MC1 LINE L1 3645 6156 -457 2532 45 0 26 chr1 25683453 25683761 -256509903 - AluY SINE Alu -11 300 1 5936 224 68 15 chr1 25683761 25684244 -256509420 + L1MC1 LINE L1 6156 6612 -1 35 0 0 0 chr1 25684599 25684634 -256509030 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr1 25684735 25684763 -256508901 + (T)n Simple_repeat Simple_repeat 1 28 0 790 296 78 49 chr1 25685332 25685842 -256507822 + L1ME2 LINE L1 48 572 -5547 1200 23 0 0 chr1 25685901 25686031 -256507633 + AluY SINE Alu 1 130 -181 183 80 0 0 chr1 25686031 25686056 -256507608 + (CAA)n Simple_repeat Simple_repeat 2 26 0 355 265 127 24 chr1 25686092 25686345 -256507319 + L1ME2 LINE L1 4987 5265 -864 2036 114 7 17 chr1 25686345 25686644 -256507020 + AluSx SINE Alu 1 296 -16 519 241 88 58 chr1 25686657 25686918 -256506746 + L1MCa LINE L1 1238 1506 -4910 331 330 49 8 chr1 25686934 25687127 -256506537 + L1MCa LINE L1 1443 1889 -898 793 206 53 18 chr1 25687248 25687418 -256506246 + L1ME2 LINE L1 5404 5579 -568 * 1123 207 48 51 chr1 25687414 25687766 -256505898 + L1ME2 LINE L1 5795 6145 -2 1194 200 15 48 chr1 25687858 25688005 -256505659 - MIR SINE MIR -1 261 126 2517 66 3 0 chr1 25688005 25688309 -256505355 + AluY SINE Alu 1 305 -6 1194 200 15 48 chr1 25688309 25688431 -256505233 - MIR SINE MIR -136 126 1 645 88 0 11 chr1 25688703 25688794 -256504870 + AluJ/FLAM SINE Alu 2 91 -221 2073 89 4 4 chr1 25688873 25689144 -256504520 - AluSc SINE Alu -1 308 38 205 222 37 19 chr1 25689199 25689253 -256504411 + MIR SINE MIR 208 262 0 22 0 0 0 chr1 25689396 25689418 -256504246 + AT_rich Low_complexity Low_complexity 1 22 0 1765 144 32 11 chr1 25690030 25690314 -256503350 + AluJb SINE Alu 1 290 -22 243 246 0 18 chr1 25691785 25691842 -256501822 - MIR3 SINE MIR -51 157 102 437 252 24 3 chr1 25692563 25692689 -256500975 - MIR SINE MIR -33 175 47 377 302 140 9 chr1 25693027 25693249 -256500415 - MIR SINE MIR 0 262 12 452 221 182 7 chr1 25693252 25693406 -256500258 - MER5A DNA MER1_type 0 189 9 2794 163 17 36 chr1 25694029 25694064 -256499600 + LTR53 LTR ERVL 1 35 -484 1895 137 13 30 chr1 25694064 25694364 -256499300 + AluJb SINE Alu 1 295 -17 2794 163 17 36 chr1 25694364 25694857 -256498807 + LTR53 LTR ERVL 35 519 0 721 234 78 19 chr1 25694954 25695159 -256498505 - MIR SINE MIR -34 228 12 387 307 54 38 chr1 25696293 25696470 -256497194 - MIR3 SINE MIR -25 183 3 2001 113 68 0 chr1 25696712 25697004 -256496660 + AluSx SINE Alu 1 312 0 930 216 0 0 chr1 25697065 25697236 -256496428 + FAM SINE Alu 1 171 -4 1668 203 0 10 chr1 25697421 25697727 -256495937 + AluJo SINE Alu 3 305 -7 1799 160 0 70 chr1 25697752 25698083 -256495581 + AluJo SINE Alu 3 310 -2 21 82 0 0 chr1 25698095 25698144 -256495520 + AT_rich Low_complexity Low_complexity 1 49 0 283 244 31 39 chr1 25698290 25698437 -256495227 + MIR SINE MIR 72 253 -9 1887 163 17 0 chr1 25698437 25698737 -256494927 - AluJo SINE Alu -7 305 1 2221 120 0 0 chr1 25698774 25699073 -256494591 + AluSx SINE Alu 1 299 -13 446 191 129 52 chr1 25699369 25699579 -256494085 + L1ME4a LINE L1 5604 5829 -292 524 221 8 8 chr1 25700049 25700171 -256493493 - MIR SINE MIR -107 155 34 546 185 117 31 chr1 25700674 25700836 -256492828 - MIR SINE MIR -24 238 63 207 376 55 0 chr1 25700979 25701144 -256492520 + MIR3 SINE MIR 35 208 0 245 267 75 64 chr1 25701484 25701670 -256491994 + MIR SINE MIR 23 217 -45 2112 128 7 10 chr1 25701696 25702002 -256491662 - AluSx SINE Alu -7 305 1 1039 106 0 0 chr1 25702002 25702134 -256491530 - AluSq/x SINE Alu -178 135 4 555 271 12 6 chr1 25702260 25702430 -256491234 - MIR SINE MIR -79 183 13 2355 94 0 13 chr1 25702721 25703028 -256490636 - AluSx SINE Alu -8 304 2 364 165 0 0 chr1 25702974 25703041 -256490623 - Alu SINE Alu -247 55 2 316 248 10 10 chr1 25703399 25703500 -256490164 - MIR SINE MIR -56 152 52 778 286 24 5 chr1 25703993 25704206 -256489458 - MIR SINE MIR -12 250 34 902 193 71 14 chr1 25704388 25704600 -256489064 - MER58A DNA MER1_type 0 224 1 445 296 63 0 chr1 25704643 25704785 -256488879 - MIR SINE MIR -79 183 33 240 143 0 0 chr1 25705119 25705161 -256488503 + (TC)n Simple_repeat Simple_repeat 1 42 0 360 0 0 0 chr1 25705169 25705209 -256488455 + (CA)n Simple_repeat Simple_repeat 2 41 0 1721 166 53 0 chr1 25705758 25705875 -256487789 + AluJb SINE Alu 1 110 -202 192 40 0 0 chr1 25705875 25705900 -256487764 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1721 166 53 0 chr1 25705900 25706065 -256487599 + AluJb SINE Alu 110 298 -14 1161 95 0 0 chr1 25706139 25706308 -256487356 + (TCCA)n Simple_repeat Simple_repeat 4 172 0 206 157 0 20 chr1 25706327 25706378 -256487286 + (TCCA)n Simple_repeat Simple_repeat 1 50 0 1973 180 56 0 chr1 25706717 25707095 -256486569 + L1MB7 LINE L1 5759 6157 -27 413 250 31 16 chr1 25707712 25707840 -256485824 + LTR67 LTR ERVL 428 557 0 695 218 0 30 chr1 25707841 25708006 -256485658 - MIR SINE MIR -91 171 12 356 297 142 14 chr1 25708071 25708219 -256485445 - MIR SINE MIR -77 185 19 224 304 35 29 chr1 25708922 25709093 -256484571 + (CCCCAG)n Simple_repeat Simple_repeat 6 177 0 228 338 14 0 chr1 25709235 25709306 -256484358 - L2 LINE L2 -8 3305 3234 215 306 38 75 chr1 25709418 25709578 -256484086 + MIR3 SINE MIR 41 194 -14 197 314 100 0 chr1 25710386 25710456 -256483208 - MIR SINE MIR -65 197 121 2365 100 10 10 chr1 25710955 25711266 -256482398 - AluSq SINE Alu -2 311 1 1627 111 13 85 chr1 25711609 25711916 -256481748 + L1MA7 LINE L1 5481 5765 -535 318 26 0 0 chr1 25712024 25712063 -256481601 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2723 165 21 2 chr1 25712064 25712586 -256481078 + L1MA7 LINE L1 5754 6285 -6 698 212 148 18 chr1 25712668 25712885 -256480779 - MIR SINE MIR -13 249 5 222 378 126 0 chr1 25712960 25713095 -256480569 - MIR SINE MIR -1 261 110 776 320 55 42 chr1 25713166 25713600 -256480064 + L2 LINE L2 2833 3272 0 698 256 90 5 chr1 25713630 25713841 -256479823 - MIR SINE MIR -13 249 21 1683 160 7 55 chr1 25713994 25714301 -256479363 + AluJo SINE Alu 1 292 -20 208 327 7 80 chr1 25715137 25715179 -256478485 + MIR SINE MIR 124 168 -94 1986 129 38 0 chr1 25715179 25715466 -256478198 + AluJb SINE Alu 1 298 -14 208 327 7 80 chr1 25715466 25715573 -256478091 + MIR SINE MIR 168 262 0 279 79 0 0 chr1 25715703 25715741 -256477923 + (CAT)n Simple_repeat Simple_repeat 3 40 0 807 259 119 124 chr1 25716353 25717366 -256476298 + L2 LINE L2 1898 2905 -409 487 214 87 8 chr1 25717592 25717718 -256475946 + L2 LINE L2 3137 3272 0 1030 190 0 0 chr1 25717892 25718076 -256475588 + MIR SINE MIR 79 262 0 385 273 15 53 chr1 25718242 25718374 -256475290 - L3 LINE CR1 -610 967 841 192 254 70 14 chr1 25718729 25718800 -256474864 + L2 LINE L2 2692 2766 -548 * 210 273 0 0 chr1 25718788 25718843 -256474821 - L2 LINE L2 -1 3312 3258 2107 131 10 0 chr1 25718916 25719206 -256474458 - AluJb SINE Alu -19 293 1 235 265 88 0 chr1 25719335 25719403 -256474261 + L2 LINE L2 3214 3287 -26 430 271 131 25 chr1 25719403 25719647 -256474017 - L1ME4a LINE L1 -22 6099 5830 885 160 123 0 chr1 25719662 25719849 -256473815 + MER20 DNA MER1_type 4 213 -6 1487 256 73 25 chr1 25720499 25721309 -256472355 - L2 LINE L2 0 3313 2457 221 236 0 0 chr1 25721479 25721534 -256472130 + MER5A DNA MER1_type 9 63 -126 972 175 0 0 chr1 25721583 25721737 -256471927 + FRAM SINE Alu 1 154 -22 200 152 43 0 chr1 25721737 25721783 -256471881 + (CA)n Simple_repeat Simple_repeat 1 48 0 481 302 113 15 chr1 25722101 25722338 -256471326 + MIR SINE MIR 3 257 -5 1016 168 0 18 chr1 25722339 25722506 -256471158 + FRAM SINE Alu 1 163 -13 249 135 0 0 chr1 25722559 25722595 -256471069 - MLT1L LTR MaLR -10 605 570 1694 201 73 32 chr1 25722595 25723033 -256470631 - MLT1D LTR MaLR 0 505 50 277 108 0 0 chr1 25723033 25723070 -256470594 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 715 127 38 13 chr1 25723070 25723228 -256470436 + CT-rich Low_complexity Low_complexity 4 165 0 2017 138 14 7 chr1 25723251 25723541 -256470123 - AluSp SINE Alu -21 292 1 274 219 16 16 chr1 25723543 25723607 -256470057 - MLT1D LTR MaLR -441 64 1 647 150 50 94 chr1 25724428 25724451 -256469213 - AluJo/FRAM SINE Alu -10 292 270 2116 67 0 34 chr1 25724451 25724718 -256468946 + AluSg SINE Alu 35 292 -18 647 150 50 94 chr1 25724718 25724854 -256468810 - AluJo/FRAM SINE Alu -32 270 140 808 231 77 28 chr1 25724903 25725116 -256468548 - MIR SINE MIR -2 260 32 2165 62 51 0 chr1 25725116 25725392 -256468272 - AluY SINE Alu -21 290 1 808 231 77 28 chr1 25725392 25725425 -256468239 - MIR SINE MIR -230 32 2 284 312 72 22 chr1 25726228 25726366 -256467298 + MIR3 SINE MIR 30 174 -34 313 371 34 0 chr1 25726921 25727099 -256466565 + MIR SINE MIR 9 192 -70 2485 63 0 13 chr1 25727324 25727625 -256466039 + AluY SINE Alu 1 297 -14 207 283 80 62 chr1 25727625 25727738 -256465926 - MER5A DNA MER1_type -29 160 46 344 211 14 0 chr1 25728633 25728704 -256464960 + L2 LINE L2 3241 3312 -1 878 259 71 0 chr1 25728727 25728966 -256464698 + MIR SINE MIR 2 257 -5 212 248 171 9 chr1 25729029 25729134 -256464530 + L2 LINE L2 3150 3271 -1 313 298 96 83 chr1 25729698 25730000 -256463664 - L2 LINE L2 0 3272 2967 1420 213 81 64 chr1 25730129 25730551 -256463113 - L1ME1 LINE L1 0 6164 5736 599 283 7 0 chr1 25731584 25731736 -256461928 + MIR SINE MIR 25 177 -85 418 159 9 115 chr1 25731976 25732089 -256461575 + MER5B DNA MER1_type 72 172 -6 224 231 327 0 chr1 25732101 25732224 -256461440 - MER5A DNA MER1_type -15 174 4 251 248 96 45 chr1 25732238 25732395 -256461269 - L2 LINE L2 -778 2536 2372 803 296 14 0 chr1 25732513 25732729 -256460935 - MIR SINE MIR -14 248 30 1114 251 68 38 chr1 25732899 25733269 -256460395 - MLT1K LTR MaLR -16 572 192 203 246 0 82 chr1 25733326 25733387 -256460277 + L2 LINE L2 2913 2968 -346 2727 213 101 24 chr1 25734315 25734983 -256458681 - L1ME1 LINE L1 -5 6161 5376 1597 166 22 42 chr1 25734983 25735338 -256458326 + MER7A DNA MER2_type 1 346 0 2727 213 101 24 chr1 25735338 25735787 -256457877 - L1ME1 LINE L1 -790 5376 4963 329 224 49 56 chr1 25735791 25735903 -256457761 - L1ME1 LINE L1 -2075 4071 3959 2470 89 0 0 chr1 25735903 25736205 -256457459 - AluSq SINE Alu -11 302 1 329 224 49 56 chr1 25736205 25736235 -256457429 - L1ME1 LINE L1 -2187 3959 3930 791 133 0 37 chr1 25736266 25736401 -256457263 - FLAM_C SINE Alu -2 131 2 693 249 47 14 chr1 25737165 25737418 -256456246 - MIR SINE MIR -2 260 1 182 206 0 0 chr1 25738545 25738579 -256455085 - MIR SINE MIR -9 253 220 383 253 0 0 chr1 25739040 25739123 -256454541 + MIR SINE MIR 61 143 -65 311 322 41 12 chr1 25739142 25739313 -256454351 + MER5A DNA MER1_type 6 181 -8 554 250 22 7 chr1 25739501 25739637 -256454027 - MIR SINE MIR -37 225 88 195 146 0 0 chr1 25739805 25739846 -256453818 + (CTCA)n Simple_repeat Simple_repeat 3 43 0 209 227 0 0 chr1 25739859 25739903 -256453761 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1917 253 52 21 chr1 25739941 25740455 -256453209 - MLT1K LTR MaLR 0 588 59 2431 145 29 2 chr1 25740455 25740870 -256452794 - MSTB LTR MaLR 0 426 1 291 280 29 65 chr1 25741240 25741381 -256452283 - MIR SINE MIR -63 145 15 509 215 56 98 chr1 25741846 25742060 -256451604 - MER102b DNA MER1_type -2 339 135 2207 118 3 16 chr1 25742097 25742411 -256451253 + AluSq SINE Alu 1 310 -3 1823 171 0 0 chr1 25742419 25742699 -256450965 + AluJb SINE Alu 1 280 -32 251 0 59 0 chr1 25742699 25742733 -256450931 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 212 271 0 0 chr1 25742801 25742860 -256450804 - MIR SINE MIR -62 146 88 241 323 8 39 chr1 25742974 25743101 -256450563 - MIR SINE MIR -70 192 70 623 216 94 22 chr1 25743336 25743517 -256450147 - MIR SINE MIR -48 214 21 284 315 111 6 chr1 25743664 25743826 -256449838 - MIR3 SINE MIR -15 193 15 1264 239 110 87 chr1 25743936 25744455 -256449209 - MLT1H1 LTR MaLR -11 531 1 474 88 0 0 chr1 25744518 25744586 -256449078 + (CATTC)n Simple_repeat Simple_repeat 3 70 0 1499 179 24 12 chr1 25744616 25744867 -256448797 - AluSx SINE Alu -53 259 6 951 141 0 7 chr1 25744870 25745005 -256448659 - AluSq/x SINE Alu -178 134 1 1104 142 16 0 chr1 25745005 25745188 -256448476 - MER5A DNA MER1_type -3 186 1 284 293 131 0 chr1 25745191 25745290 -256448374 + L2 LINE L2 3197 3308 -5 870 186 6 6 chr1 25745822 25745983 -256447681 - FRAM SINE Alu -5 161 1 2102 142 0 19 chr1 25746002 25746320 -256447344 - AluJo SINE Alu 0 312 1 523 274 39 46 chr1 25746335 25746594 -256447070 - MIR SINE MIR 0 262 6 1201 267 25 47 chr1 25746615 25746898 -256446766 + L2 LINE L2 2877 3148 -165 1307 106 78 18 chr1 25746898 25747115 -256446549 - MER30 DNA MER1_type 0 230 1 1201 267 25 47 chr1 25747115 25747277 -256446387 + L2 LINE L2 3148 3312 -1 657 139 0 0 chr1 25747285 25747393 -256446271 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 424 273 55 0 chr1 25748137 25748265 -256445399 + MIR SINE MIR 11 145 -117 192 200 0 0 chr1 25748316 25748361 -256445303 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 461 157 12 0 chr1 25748390 25748473 -256445191 - FLAM_A SINE Alu -11 131 48 374 127 0 16 chr1 25748478 25748578 -256445086 - Alu SINE Alu 0 302 235 967 244 148 10 chr1 25748735 25749227 -256444437 - L1MC4a LINE L1 -1237 6571 6021 1879 148 0 24 chr1 25749231 25749545 -256444119 - AluJb SINE Alu 0 307 1 586 290 6 6 chr1 25749872 25750048 -256443616 - MIR SINE MIR -21 241 66 526 322 79 33 chr1 25750169 25750678 -256442986 - L1ME4a LINE L1 -12 6109 5578 376 232 131 0 chr1 25750982 25751081 -256442583 + MIR SINE MIR 41 152 -56 450 183 108 17 chr1 25751081 25751201 -256442463 + FLAM_C SINE Alu 1 131 -2 269 322 16 13 chr1 25751308 25751437 -256442227 - MIR SINE MIR -68 140 17 2518 98 19 3 chr1 25752277 25752646 -256441018 - THE1C LTR MaLR 0 375 1 223 331 166 0 chr1 25753158 25753303 -256440361 + MIR SINE MIR 3 171 -91 259 207 24 37 chr1 25753597 25753679 -256439985 - L1MC4a LINE L1 -2009 5799 5719 739 223 64 17 chr1 25754012 25754253 -256439411 + MIR SINE MIR 6 262 0 472 242 71 0 chr1 25755374 25755553 -256438111 - MIR SINE MIR -52 210 17 235 248 52 50 chr1 25755590 25755709 -256437955 + MER5A DNA MER1_type 1 131 -47 207 0 0 0 chr1 25755947 25755970 -256437694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1420 129 0 24 chr1 25755973 25756182 -256437482 - AluJb SINE Alu -24 288 85 217 324 90 27 chr1 25756704 25756815 -256436849 - MIR3 SINE MIR -89 119 2 488 286 71 109 chr1 25757043 25757385 -256436279 + L2 LINE L2 2383 2737 -576 1115 41 7 0 chr1 25757385 25757530 -256436134 + (TTCC)n Simple_repeat Simple_repeat 4 149 0 488 286 71 109 chr1 25757530 25757564 -256436100 + L2 LINE L2 2737 2771 -542 2112 122 0 3 chr1 25757564 25757860 -256435804 - AluSx SINE Alu -17 295 1 488 286 71 109 chr1 25757860 25758427 -256435237 + L2 LINE L2 2771 3311 -2 2587 149 29 5 chr1 25758457 25758872 -256434792 - MSTB LTR MaLR 0 426 2 708 224 4 96 chr1 25759435 25759685 -256433979 - MLT1K LTR MaLR -13 575 349 594 212 13 40 chr1 25760354 25760388 -256433276 + MER103 DNA DNA 1 34 -132 2032 118 54 48 chr1 25760388 25760760 -256432904 + THE1C LTR MaLR 1 374 -1 594 212 13 40 chr1 25760760 25760876 -256432788 + MER103 DNA DNA 34 147 -19 306 213 160 84 chr1 25760947 25761152 -256432512 + MIR SINE MIR 15 230 -32 1871 97 112 8 chr1 25761627 25761895 -256431769 - AluSg SINE Alu -14 296 1 297 188 78 0 chr1 25762210 25762274 -256431390 + MLT1K LTR MaLR 517 585 -3 1720 185 0 23 chr1 25762314 25762616 -256431048 + AluJo SINE Alu 1 295 -17 380 321 0 0 chr1 25762617 25762723 -256430941 - L2 LINE L2 -3 3310 3205 4335 150 21 32 chr1 25762879 25763694 -256429970 + L1MB7 LINE L1 5279 6084 -100 3476 167 126 68 chr1 25763697 25764698 -256428966 + MER52C LTR ERV1 9 1278 0 312 127 0 0 chr1 25764712 25764767 -256428897 + L1MB7 LINE L1 6112 6166 -18 571 236 114 12 chr1 25764800 25765054 -256428610 + L1ME4a LINE L1 5838 6117 -4 245 170 0 0 chr1 25765116 25765163 -256428501 - L2 LINE L2 -3 3269 3223 963 217 33 8 chr1 25765339 25765579 -256428085 + MIR SINE MIR 2 247 -15 694 221 62 67 chr1 25766419 25766659 -256427005 + MIR SINE MIR 24 262 0 415 315 34 7 chr1 25766923 25767069 -256426595 - MIR3 SINE MIR -1 207 58 945 280 16 0 chr1 25767165 25767422 -256426242 - MIR SINE MIR 0 262 2 182 302 0 0 chr1 25767828 25767871 -256425793 - L2 LINE L2 -89 3183 3141 244 232 113 3 chr1 25768911 25769014 -256424650 + MIR SINE MIR 36 152 -62 229 175 79 16 chr1 25769014 25769077 -256424587 + L1MC5 LINE L1 7859 7925 -36 394 259 27 0 chr1 25769082 25769194 -256424470 + MIR SINE MIR 148 262 0 27 29 0 0 chr1 25769233 25769267 -256424397 + AT_rich Low_complexity Low_complexity 1 34 0 182 247 49 62 chr1 25769439 25769520 -256424144 - L2 LINE L2 0 3272 3193 722 333 36 31 chr1 25769707 25770518 -256423146 + L1MC/D LINE L1 4419 5233 -913 481 244 26 0 chr1 25770548 25770663 -256423001 + L1MC/D LINE L1 5401 5518 -2290 1027 113 0 7 chr1 25770752 25770894 -256422770 + AluJb SINE Alu 1 141 -171 24 0 0 0 chr1 25770911 25770935 -256422729 + AT_rich Low_complexity Low_complexity 1 24 0 452 333 23 11 chr1 25771352 25771529 -256422135 - L2 LINE L2 -558 2756 2578 687 132 110 37 chr1 25772520 25772656 -256421008 - FRAM SINE Alu -30 146 1 225 197 106 0 chr1 25774761 25774827 -256418837 - MIR SINE MIR -70 192 120 398 294 111 28 chr1 25775024 25775313 -256418351 + L2 LINE L2 2989 3301 -12 2204 104 0 10 chr1 25775316 25775632 -256418032 + AluSx SINE Alu 1 313 0 246 276 92 20 chr1 25775694 25775792 -256417872 - L2 LINE L2 -45 3268 3164 586 220 60 36 chr1 25775843 25776011 -256417653 + MIR SINE MIR 78 249 -13 433 269 0 45 chr1 25776094 25776228 -256417436 + L2 LINE L2 3186 3313 0 1014 197 122 56 chr1 25776890 25777210 -256416454 - MER58B DNA MER1_type 0 341 1 1944 83 0 40 chr1 25777900 25778177 -256415487 - AluSq SINE Alu -8 305 40 304 217 0 0 chr1 25779263 25779323 -256414341 + L2 LINE L2 3251 3310 -3 2220 70 0 4 chr1 25779356 25779628 -256414036 + AluSq SINE Alu 33 303 -10 2298 96 6 19 chr1 25780455 25780768 -256412896 + AluSg SINE Alu 1 309 -1 760 286 39 0 chr1 25780796 25781030 -256412634 - MIR SINE MIR 0 262 20 435 246 64 53 chr1 25781057 25781244 -256412420 - HAL1b LINE L1 -1 1347 1159 284 173 0 0 chr1 25781261 25781313 -256412351 - MIR SINE MIR -28 234 183 305 293 153 31 chr1 25781974 25782326 -256411338 + L2 LINE L2 2305 2699 -615 370 203 123 31 chr1 25782329 25782450 -256411214 - L1ME1 LINE L1 0 6334 6047 2117 141 0 0 chr1 25782450 25782748 -256410916 - AluJb SINE Alu -14 298 1 5728 126 34 51 chr1 25782748 25783691 -256409973 - L1MCa LINE L1 -4562 1864 853 2356 106 3 0 chr1 25783691 25783993 -256409671 - AluSg SINE Alu -7 303 1 5728 126 34 51 chr1 25783993 25784270 -256409394 - L1MCa LINE L1 -5573 853 573 275 239 15 15 chr1 25784273 25784340 -256409324 - L1MCa LINE L1 -5811 615 549 240 111 22 44 chr1 25784340 25784385 -256409279 + MER4D LTR ERV1 1 44 -828 355 147 88 0 chr1 25784385 25784453 -256409211 + MER50 LTR ERV1 1 74 -660 258 184 20 20 chr1 25784454 25784503 -256409161 - MER50-int LTR ERV1 -7156 49 1 4664 116 25 26 chr1 25784541 25785140 -256408524 - MER50 LTR ERV1 -12 722 123 1984 118 20 27 chr1 25785140 25785437 -256408227 - AluSx SINE Alu -16 296 2 4664 116 25 26 chr1 25785437 25785560 -256408104 - MER50 LTR ERV1 -611 123 1 5911 99 38 8 chr1 25785560 25786396 -256407268 + MER4D LTR ERV1 41 901 -2 1102 177 25 20 chr1 25786396 25786599 -256407065 - L1MCa LINE L1 -5872 554 351 669 253 12 10 chr1 25786605 25786801 -256406863 + L1MB3 LINE L1 2418 2609 -3537 665 204 153 61 chr1 25786929 25787125 -256406539 + LTR21A LTR ERV1 189 402 -103 748 139 14 21 chr1 25787146 25787290 -256406374 + LTR21A LTR ERV1 344 486 -19 11274 192 32 22 chr1 25787290 25787785 -256405879 + L1MB3 LINE L1 2635 3124 -3059 2246 125 0 16 chr1 25787785 25788098 -256405566 + AluSx SINE Alu 1 308 -4 11274 192 32 22 chr1 25788098 25789077 -256404587 + L1MB3 LINE L1 3124 4092 -2091 642 197 15 8 chr1 25789077 25789209 -256404455 - FLAM_A SINE Alu 0 133 1 11274 192 32 22 chr1 25789209 25790400 -256403264 + L1MB3 LINE L1 4092 5348 -835 2249 101 0 14 chr1 25790400 25790719 -256402945 + AluSg SINE Alu 1 310 0 11274 192 32 22 chr1 25790719 25791422 -256402242 + L1MB3 LINE L1 5348 6043 -140 276 209 0 52 chr1 25791422 25791556 -256402108 + CT-rich Low_complexity Low_complexity 4 130 0 995 257 58 59 chr1 25791661 25792327 -256401337 + L2 LINE L2 2629 3313 0 289 359 125 33 chr1 25792573 25793060 -256400604 - L2 LINE L2 -436 2878 2347 7190 156 62 24 chr1 25793257 25793473 -256400191 + L1MC1 LINE L1 3 209 -6217 2073 120 3 0 chr1 25793473 25793785 -256399879 + AluSx SINE Alu 1 313 0 7190 156 62 24 chr1 25793785 25794974 -256398690 + L1MC1 LINE L1 209 1463 -4963 4858 218 58 8 chr1 25794982 25797401 -256396263 + L1MC1 LINE L1 3528 6148 -465 2492 66 0 10 chr1 25797401 25797704 -256395960 - AluY SINE Alu -11 300 1 1158 61 0 0 chr1 25797706 25797837 -256395827 - AluSg1 SINE Alu -178 131 1 399 173 111 0 chr1 25797865 25797946 -256395718 - L2 LINE L2 -15 3298 3209 1448 157 0 0 chr1 25797946 25798162 -256395502 + AluJb SINE Alu 85 300 -12 865 120 0 23 chr1 25798245 25798378 -256395286 + AluJo/FLAM SINE Alu 4 133 -169 2325 80 3 13 chr1 25798380 25798679 -256394985 + AluSc SINE Alu 3 298 -11 234 219 0 37 chr1 25798707 25798789 -256394875 - L2 LINE L2 -163 3150 3072 1799 53 0 5 chr1 25798908 25799115 -256394549 - AluY SINE Alu -105 206 1 511 169 0 0 chr1 25799154 25799231 -256394433 + MER2 DNA MER2_type 269 345 0 622 236 14 34 chr1 25799258 25799406 -256394258 - MER58B DNA MER1_type 0 341 197 794 212 66 10 chr1 25799636 25799834 -256393830 + MER3 DNA MER1_type 1 209 0 259 282 56 0 chr1 25799834 25799905 -256393759 - LTR41 LTR ERVL -112 661 587 440 207 60 40 chr1 25800081 25800231 -256393433 - LTR41 LTR ERVL -586 187 35 229 143 0 0 chr1 25800232 25800267 -256393397 + MLT1B LTR MaLR 304 338 -52 2204 110 10 0 chr1 25800518 25800810 -256392854 - AluSq SINE Alu -18 295 1 428 128 32 70 chr1 25800848 25801035 -256392629 + (TA)n Simple_repeat Simple_repeat 1 180 0 382 326 100 3 chr1 25801116 25801475 -256392189 + L1ME3 LINE L1 2507 2900 -3246 563 180 41 25 chr1 25801497 25801619 -256392045 + FLAM_C SINE Alu 2 125 -18 385 260 12 17 chr1 25801736 25801909 -256391755 + GA-rich Low_complexity Low_complexity 5 176 0 265 256 23 15 chr1 25801926 25802059 -256391605 + GA-rich Low_complexity Low_complexity 5 138 0 905 166 7 13 chr1 25802138 25802289 -256391375 - AluJo SINE Alu -162 150 1 256 254 247 43 chr1 25802296 25802584 -256391080 + L1ME3 LINE L1 3656 3884 -2262 2406 73 0 13 chr1 25802584 25802886 -256390778 - AluSp SINE Alu -15 298 1 256 254 247 43 chr1 25802886 25802990 -256390674 + L1ME3 LINE L1 3884 4128 -2018 248 206 158 72 chr1 25803082 25803197 -256390467 + L1ME3 LINE L1 4981 5115 -1031 2462 63 3 0 chr1 25803197 25803496 -256390168 - AluY SINE Alu -11 300 1 248 206 158 72 chr1 25803496 25803558 -256390106 + L1ME3 LINE L1 5115 5170 -976 879 224 33 61 chr1 25803652 25803897 -256389767 - MLT1J LTR MaLR -248 263 26 681 310 58 47 chr1 25804022 25804276 -256389388 + L1ME3 LINE L1 5289 5539 -623 733 200 0 29 chr1 25804276 25804446 -256389218 - L1PA16 LINE L1 -4 6162 5998 681 310 58 47 chr1 25804446 25804723 -256388941 + L1ME3 LINE L1 5539 5826 -336 2293 81 0 3 chr1 25804978 25805261 -256388403 + AluSg SINE Alu 1 282 -28 247 62 0 0 chr1 25805261 25805293 -256388371 + (TAAAA)n Simple_repeat Simple_repeat 2 105 0 934 236 138 3 chr1 25805889 25806186 -256387478 + L2 LINE L2 2960 3296 -17 2383 111 0 0 chr1 25806187 25806493 -256387171 - AluSx SINE Alu -6 306 1 297 289 11 11 chr1 25806642 25806732 -256386932 - L2 LINE L2 0 3272 3183 2282 130 0 0 chr1 25807221 25807528 -256386136 - AluSx SINE Alu -5 307 1 249 291 110 1 chr1 25807621 25807754 -256385910 - MIR SINE MIR -30 178 33 193 297 27 14 chr1 25807766 25807840 -256385824 - L2 LINE L2 -831 2483 2409 2283 115 25 6 chr1 25807914 25808271 -256385393 + THE1B LTR MaLR 1 364 0 445 308 26 82 chr1 25809148 25809379 -256384285 + L2 LINE L2 2916 3158 -114 1994 118 0 94 chr1 25809379 25809708 -256383956 - AluSq SINE Alu -15 298 1 2258 112 0 22 chr1 25809709 25810022 -256383642 - AluSx SINE Alu -6 306 1 445 308 26 82 chr1 25810022 25810165 -256383499 + L2 LINE L2 3157 3271 -1 270 333 81 0 chr1 25810356 25810467 -256383197 + MIR3 SINE MIR 38 157 -51 1034 238 18 0 chr1 25810494 25810717 -256382947 - MIR SINE MIR -20 242 16 390 330 34 46 chr1 25810909 25811084 -256382580 + MIR SINE MIR 19 192 -70 935 162 32 16 chr1 25811084 25811269 -256382395 + MER53 DNA DNA 1 188 -1 390 330 34 46 chr1 25811269 25811332 -256382332 + MIR SINE MIR 192 254 -8 2254 96 27 0 chr1 25811414 25811707 -256381957 + AluSc SINE Alu 1 301 -8 250 228 0 0 chr1 25812565 25812622 -256381042 - L1ME LINE L1 -462 5659 5603 2340 97 3 3 chr1 25812642 25812942 -256380722 - AluSx SINE Alu -12 300 1 218 248 30 59 chr1 25813577 25813678 -256379986 + MIR SINE MIR 45 142 -120 903 228 51 32 chr1 25813954 25814267 -256379397 + L1MC4 LINE L1 7735 7995 0 22 80 0 0 chr1 25814294 25814344 -256379320 + AT_rich Low_complexity Low_complexity 1 50 0 2346 93 3 22 chr1 25814448 25814759 -256378905 - AluY SINE Alu -6 305 1 186 43 0 0 chr1 25814760 25814783 -256378881 + (TTCTCC)n Simple_repeat Simple_repeat 3 25 0 586 207 0 8 chr1 25814789 25814910 -256378754 - AluJb SINE Alu 0 312 193 238 148 37 0 chr1 25815100 25815154 -256378510 + GA-rich Low_complexity Low_complexity 2 57 0 194 298 0 0 chr1 25815257 25815304 -256378360 + L3 LINE CR1 1459 1505 -72 204 125 0 0 chr1 25815408 25815440 -256378224 + (CA)n Simple_repeat Simple_repeat 1 32 0 1302 223 55 7 chr1 25815565 25815874 -256377790 + MER46C DNA MER2_type 15 338 0 309 145 0 0 chr1 25815934 25815996 -256377668 + (TG)n Simple_repeat Simple_repeat 2 63 0 2293 266 171 31 chr1 25816471 25817843 -256375821 + L2 LINE L2 1707 3271 -42 190 152 0 61 chr1 25818575 25818641 -256375023 + (TCTCTG)n Simple_repeat Simple_repeat 6 67 0 289 277 11 49 chr1 25818656 25818840 -256374824 + CT-rich Low_complexity Low_complexity 1 177 0 241 148 62 2 chr1 25819316 25819370 -256374294 + MIR SINE MIR 95 146 -62 2044 113 24 3 chr1 25819681 25819972 -256373692 + AluSq SINE Alu 5 301 -12 411 333 118 0 chr1 25820242 25820428 -256373236 - MIR SINE MIR -7 255 48 736 293 0 13 chr1 25820472 25820697 -256372967 + MIR SINE MIR 28 249 -13 362 315 42 7 chr1 25821068 25821211 -256372453 + MIR SINE MIR 46 193 -69 441 240 56 40 chr1 25821215 25821340 -256372324 - L2 LINE L2 -2 3311 3185 230 309 0 0 chr1 25822141 25822196 -256371468 + (CTAGGG)n Simple_repeat Simple_repeat 6 60 0 204 405 0 8 chr1 25822450 25822581 -256371083 - MIR SINE MIR -124 138 9 1376 183 11 68 chr1 25822932 25823211 -256370453 - AluJo SINE Alu -49 263 1 798 173 0 0 chr1 25823738 25823900 -256369764 + (TGGA)n Simple_repeat Simple_repeat 1 162 0 738 214 0 0 chr1 25823969 25824190 -256369474 + (TGGA)n Simple_repeat Simple_repeat 1 221 0 1987 108 4 21 chr1 25824295 25824574 -256369090 + AluSx SINE Alu 27 300 -12 804 166 7 14 chr1 25824608 25824747 -256368917 + FLAM_C SINE Alu 1 138 -5 2205 133 0 0 chr1 25824749 25825058 -256368606 + AluSx SINE Alu 1 309 -3 201 159 0 0 chr1 25825062 25825106 -256368558 + A-rich Low_complexity Low_complexity 1 44 0 822 277 77 62 chr1 25825149 25825684 -256367980 - L1ME4a LINE L1 -61 6060 5518 966 177 18 58 chr1 25825717 25825943 -256367721 - MER96B DNA MER1_type? -2 415 199 1983 130 50 13 chr1 25826193 25826494 -256367170 + AluJb SINE Alu 1 312 0 249 100 25 0 chr1 25826755 25826795 -256366869 + MER96B DNA MER1_type? 190 230 -187 183 129 0 0 chr1 25826849 25826880 -256366784 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 427 335 29 12 chr1 25826989 25827159 -256366505 + MIR SINE MIR 53 225 -37 188 180 49 66 chr1 25827204 25827265 -256366399 - L2 LINE L2 -3 3269 3210 545 163 7 26 chr1 25829337 25829490 -256364174 + (TCCA)n Simple_repeat Simple_repeat 1 150 0 716 155 6 23 chr1 25829508 25829682 -256363982 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 751 177 6 6 chr1 25829709 25829884 -256363780 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 315 286 201 0 chr1 25830222 25830380 -256363284 + MIR SINE MIR 11 197 -65 231 36 0 0 chr1 25831314 25831342 -256362322 + (CAGA)n Simple_repeat Simple_repeat 1 28 0 1961 153 10 3 chr1 25831965 25832272 -256361392 - AluSx SINE Alu -3 309 1 348 229 90 0 chr1 25832308 25832430 -256361234 - L1ME4a LINE L1 -42 6079 5947 517 210 14 0 chr1 25832469 25832607 -256361057 + CT-rich Low_complexity Low_complexity 4 143 0 1123 127 13 0 chr1 25833807 25833964 -256359700 - AluSg/x SINE Alu -21 289 131 404 121 0 0 chr1 25833964 25834022 -256359642 - AluS SINE Alu -252 59 2 1616 151 9 78 chr1 25834061 25834380 -256359284 - AluJb SINE Alu -1 311 15 502 319 20 5 chr1 25834388 25834592 -256359072 + L1ME LINE L1 5561 5767 -354 236 36 0 0 chr1 25834592 25834620 -256359044 + MER41A LTR ERV1 400 427 -127 2418 100 0 0 chr1 25834620 25834931 -256358733 - AluSx SINE Alu -1 311 1 2343 115 0 10 chr1 25835584 25835898 -256357766 + AluSx SINE Alu 1 311 -1 1213 74 0 0 chr1 25835902 25836050 -256357614 + AluYa5 SINE Alu 136 283 -28 316 313 136 57 chr1 25836057 25836581 -256357083 + L2 LINE L2 1696 2260 -1054 208 344 119 20 chr1 25836581 25836732 -256356932 + L2 LINE L2 2715 2880 -434 1878 158 0 42 chr1 25836938 25837249 -256356415 - AluSx SINE Alu -14 298 1 234 0 0 0 chr1 25837375 25837401 -256356263 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 2104 98 0 11 chr1 25837905 25838180 -256355484 + AluSq SINE Alu 40 311 -2 517 317 221 16 chr1 25838255 25838567 -256355097 + L3 LINE CR1 431 806 -771 2147 94 35 11 chr1 25838722 25839009 -256354655 + AluSx SINE Alu 1 294 -18 1974 145 14 0 chr1 25839037 25839326 -256354338 + AluJo SINE Alu 1 293 -19 702 229 22 45 chr1 25839326 25839549 -256354115 + L1MC5 LINE L1 7714 7931 -30 339 164 149 0 chr1 25840133 25840200 -256353464 - MER45A DNA AcHobo -1 177 101 1963 142 0 39 chr1 25840680 25840841 -256352823 - AluJo SINE Alu -15 297 152 2154 120 10 32 chr1 25840841 25841149 -256352515 - AluSx SINE Alu -11 301 1 1963 142 0 39 chr1 25841149 25841296 -256352368 - AluJo SINE Alu -160 152 1 478 254 108 0 chr1 25842421 25842551 -256351113 - L2 LINE L2 -7 3265 3122 205 250 60 36 chr1 25843228 25843312 -256350352 + MIR SINE MIR 127 212 -50 2256 107 0 0 chr1 25843551 25843841 -256349823 - AluSc SINE Alu -19 290 1 198 186 186 49 chr1 25844510 25844612 -256349052 + MIR SINE MIR 113 228 -34 301 170 0 0 chr1 25844629 25844676 -256348988 + L1PA16 LINE L1 6037 6083 -83 2281 98 0 13 chr1 25844984 25845291 -256348373 - AluY SINE Alu -8 303 1 2533 57 7 0 chr1 25845717 25846015 -256347649 - AluSp SINE Alu -13 300 1 873 293 29 0 chr1 25846246 25846488 -256347176 - MIR SINE MIR 0 262 14 737 309 49 8 chr1 25897199 25897445 -256296219 - MIR SINE MIR 0 262 7 254 306 19 28 chr1 25897979 25898087 -256295577 + L2 LINE L2 3207 3313 0 596 259 129 35 chr1 25898494 25898695 -256294969 - MIR SINE MIR -32 230 11 291 247 270 0 chr1 25898762 25898851 -256294813 + MER91A DNA MER1_type 84 196 0 414 241 52 0 chr1 25899083 25899199 -256294465 + MIR3 SINE MIR 81 202 -6 494 281 163 0 chr1 25899853 25900006 -256293658 + MER91A DNA MER1_type 2 179 -17 319 206 15 0 chr1 25900204 25900272 -256293392 - MER117 DNA MER1_type -1 196 128 210 275 58 0 chr1 25900885 25900954 -256292710 - MIR SINE MIR -55 153 81 434 246 42 17 chr1 25901261 25901379 -256292285 + MIR SINE MIR 25 145 -63 383 259 206 8 chr1 25901486 25901617 -256292047 + MIR3 SINE MIR 17 173 -35 328 335 21 7 chr1 25902173 25902316 -256291348 - MIR SINE MIR -57 151 4 356 262 35 41 chr1 25902871 25903016 -256290648 + L2 LINE L2 2946 3089 -183 363 44 0 0 chr1 25903175 25903220 -256290444 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 1104 96 0 0 chr1 25903240 25903449 -256290215 + (TGGA)n Simple_repeat Simple_repeat 1 209 0 500 309 121 42 chr1 25903671 25904075 -256289589 + MLT1K LTR MaLR 151 586 -2 250 347 37 21 chr1 25904079 25904269 -256289395 + L3b LINE CR1 1173 1365 -218 1504 245 125 12 chr1 25904281 25904792 -256288872 - MLT1K LTR MaLR -19 569 1 218 352 109 31 chr1 25904799 25904992 -256288672 + L3b LINE CR1 1372 1579 -4 452 300 75 31 chr1 25906017 25906310 -256287354 + L2 LINE L2 2475 2780 -534 2193 112 3 6 chr1 25906355 25906669 -256286995 - AluSq SINE Alu 0 313 1 4227 161 26 23 chr1 25906678 25907183 -256286481 - L1MB3 LINE L1 -1 6182 5673 1913 150 0 3 chr1 25907183 25907489 -256286175 + AluSx SINE Alu 1 305 -7 4227 161 26 23 chr1 25907489 25907723 -256285941 - L1MB3 LINE L1 -510 5673 5441 1836 179 0 22 chr1 25907728 25908124 -256285540 - AluJb SINE Alu 0 389 1 365 223 75 0 chr1 25908155 25908249 -256285415 - MER20B DNA MER1_type -620 163 63 946 238 21 148 chr1 25908302 25908664 -256285000 + L2 LINE L2 2826 3094 -219 1819 170 23 0 chr1 25908664 25908964 -256284700 + AluJb SINE Alu 6 312 0 946 238 21 148 chr1 25908964 25909160 -256284504 + L2 LINE L2 3094 3313 0 433 281 98 24 chr1 25909174 25909338 -256284326 - MIR3 SINE MIR -17 191 16 247 309 149 48 chr1 25909789 25909957 -256283707 + MIR SINE MIR 33 217 -45 581 293 19 43 chr1 25910116 25910324 -256283340 - MIR SINE MIR 0 262 60 282 259 26 35 chr1 25910450 25910566 -256283098 + L2 LINE L2 3015 3129 -184 414 0 0 0 chr1 25910708 25910754 -256282910 + (CA)n Simple_repeat Simple_repeat 2 47 0 220 250 0 0 chr1 25911084 25911132 -256282532 - L2 LINE L2 -3 3310 3263 487 324 42 24 chr1 25911339 25911552 -256282112 - MIR SINE MIR -17 245 29 242 299 55 47 chr1 25912147 25912274 -256281390 - MIR3 SINE MIR -43 165 38 231 311 14 0 chr1 25912845 25912919 -256280745 + MIR3 SINE MIR 82 156 -52 375 326 39 16 chr1 25913070 25913199 -256280465 + MIR SINE MIR 94 225 -37 222 150 0 0 chr1 25913208 25913248 -256280416 + (CAT)n Simple_repeat Simple_repeat 1 40 0 271 209 267 12 chr1 25913315 25913401 -256280263 + MIR SINE MIR 38 145 -63 474 313 31 19 chr1 25913566 25913726 -256279938 - MIR SINE MIR 0 262 101 560 255 88 56 chr1 25913765 25914016 -256279648 - MIR SINE MIR 0 262 4 24 32 0 0 chr1 25914494 25914525 -256279139 + AT_rich Low_complexity Low_complexity 1 31 0 200 59 29 0 chr1 25915394 25915428 -256278236 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 599 208 11 11 chr1 25915468 25915646 -256278018 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 847 177 4 16 chr1 25915658 25915918 -256277746 + (TGAA)n Simple_repeat Simple_repeat 1 256 0 283 241 58 23 chr1 25916600 25916687 -256276977 - MIR SINE MIR -93 169 80 198 280 47 37 chr1 25916758 25916865 -256276799 + L2 LINE L2 2420 2527 -787 2318 100 0 0 chr1 25917085 25917386 -256276278 - AluSx SINE Alu -11 301 1 187 295 33 0 chr1 25918084 25918145 -256275519 - L2 LINE L2 -7 3306 3244 1968 100 10 48 chr1 25918218 25918529 -256275135 + AluSg SINE Alu 1 299 -11 420 143 0 0 chr1 25920112 25920182 -256273482 + (CA)n Simple_repeat Simple_repeat 2 71 0 783 89 9 0 chr1 25920396 25920508 -256273156 + AluSg/x SINE Alu 195 307 -2 288 278 148 28 chr1 25920686 25920794 -256272870 + MIR SINE MIR 22 142 -66 514 274 19 13 chr1 25920902 25921084 -256272580 - MIR SINE MIR -47 215 37 1240 271 142 12 chr1 25921298 25922011 -256271653 + L2 LINE L2 2503 3313 0 186 43 0 0 chr1 25922144 25922167 -256271497 + (CA)n Simple_repeat Simple_repeat 2 24 0 509 230 6 0 chr1 25922236 25922414 -256271250 + (CA)n Simple_repeat Simple_repeat 2 180 0 355 298 190 30 chr1 25922889 25923258 -256270406 + L2 LINE L2 2844 3271 -1 245 310 0 0 chr1 25923512 25923599 -256270065 + (CCA)n Simple_repeat Simple_repeat 2 88 0 204 390 28 7 chr1 25924100 25924241 -256269423 + MIR SINE MIR 98 241 -21 350 317 85 0 chr1 25925302 25925476 -256268188 + MIR SINE MIR 65 262 0 290 325 104 26 chr1 25925468 25925622 -256268042 - MIR SINE MIR -26 236 71 * 328 319 113 8 chr1 25925806 25925993 -256267671 - MIR SINE MIR -1 261 34 494 282 35 0 chr1 25926607 25926777 -256266887 + (CACG)n Simple_repeat Simple_repeat 4 179 0 273 246 105 9 chr1 25926798 25926912 -256266752 + L2 LINE L2 2864 2988 -284 219 254 119 0 chr1 25926919 25926978 -256266686 + L2 LINE L2 3190 3255 -58 192 241 0 0 chr1 25927188 25927246 -256266418 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 393 117 0 0 chr1 25927333 25927393 -256266271 + (GGGA)n Simple_repeat Simple_repeat 4 63 0 1093 191 0 31 chr1 25927536 25927761 -256265903 + MER58A DNA MER1_type 6 223 -1 327 269 158 39 chr1 25927766 25928000 -256265664 - L3 LINE CR1 -11 1566 1305 401 320 180 15 chr1 25928931 25929137 -256264527 + MIR SINE MIR 3 242 -20 1920 143 3 7 chr1 25929181 25929482 -256264182 - AluJo SINE Alu -12 300 1 207 114 0 0 chr1 25929571 25929606 -256264058 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 271 310 121 0 chr1 25929995 25930137 -256263527 + MIR3 SINE MIR 21 182 -26 188 65 0 32 chr1 25930327 25930358 -256263306 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 312 228 140 18 chr1 25930366 25930480 -256263184 + MIR3 SINE MIR 13 140 -68 186 268 18 0 chr1 25930557 25930613 -256263051 - L2 LINE L2 -30 3283 3227 2214 107 0 0 chr1 25930889 25931189 -256262475 - AluY SINE Alu -11 300 1 473 236 108 0 chr1 25931239 25931387 -256262277 + L2 LINE L2 2535 2698 -616 762 176 16 0 chr1 25931963 25932088 -256261576 + AluSq/x SINE Alu 3 129 -183 561 234 32 7 chr1 25932117 25932271 -256261393 - LTR33 LTR ERVL -86 435 278 320 280 8 15 chr1 25932333 25932465 -256261199 - LTR33 LTR ERVL -375 146 16 244 318 73 18 chr1 25933329 25933439 -256260225 + MIR3 SINE MIR 43 158 -50 375 132 0 0 chr1 25933472 25933540 -256260124 + (TC)n Simple_repeat Simple_repeat 2 69 0 441 0 0 0 chr1 25933540 25933589 -256260075 + (CA)n Simple_repeat Simple_repeat 1 49 0 251 98 20 59 chr1 25934137 25934188 -256259476 + MER69 DNA AcHobo 63 111 -2415 839 202 93 16 chr1 25934189 25934437 -256259227 + MER69 DNA AcHobo 2260 2526 0 731 258 60 17 chr1 25934924 25935157 -256258507 + MIR SINE MIR 4 246 -16 186 282 84 14 chr1 25935449 25935520 -256258144 - MIR SINE MIR -79 183 108 456 229 16 8 chr1 25935665 25935787 -256257877 - MER58B DNA MER1_type -2 339 217 317 276 147 35 chr1 25935883 25936053 -256257611 - MIR3 SINE MIR 0 208 20 751 189 5 63 chr1 25936355 25936545 -256257119 - MER20 DNA MER1_type -40 179 1 201 375 131 9 chr1 25937003 25937232 -256256432 + MIR SINE MIR 2 258 -4 273 319 21 0 chr1 25937286 25937380 -256256284 + MIR SINE MIR 108 203 -59 415 313 30 0 chr1 25937690 25937824 -256255840 - MIR SINE MIR -32 230 93 22 0 0 0 chr1 25937936 25937958 -256255706 + AT_rich Low_complexity Low_complexity 1 22 0 201 39 0 0 chr1 25938092 25938118 -256255546 + (CA)n Simple_repeat Simple_repeat 1 26 0 243 206 0 63 chr1 25938591 25938654 -256255010 - MIR3 SINE MIR -46 162 104 467 231 109 26 chr1 25939313 25939469 -256254195 - MIR3 SINE MIR -13 195 27 328 311 47 19 chr1 25939995 25940101 -256253563 + MIR SINE MIR 80 188 -74 190 337 72 0 chr1 25940087 25940170 -256253494 - L2 LINE L2 -75 3197 3109 * 192 321 0 0 chr1 25940140 25940196 -256253468 - MIR SINE MIR -202 60 5 352 306 19 37 chr1 25940815 25940923 -256252741 - MIR SINE MIR -70 138 33 206 285 153 22 chr1 25941188 25941325 -256252339 - L2 LINE L2 -1 3312 3158 346 299 8 55 chr1 25941326 25941436 -256252228 + L2 LINE L2 3191 3296 -17 189 0 0 0 chr1 25941436 25941457 -256252207 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 346 299 8 55 chr1 25941457 25941473 -256252191 + L2 LINE L2 3296 3311 -2 195 206 127 16 chr1 25942084 25942147 -256251517 - MIR3 SINE MIR -136 72 3 271 307 34 11 chr1 25942259 25942347 -256251317 - MIR SINE MIR -84 124 35 299 324 203 7 chr1 25943235 25943383 -256250281 - MIR SINE MIR -51 211 35 225 259 0 0 chr1 25943556 25943614 -256250050 + (TG)n Simple_repeat Simple_repeat 2 59 0 336 24 0 0 chr1 25944236 25944277 -256249387 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 279 0 0 0 chr1 25944277 25944308 -256249356 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1641 145 64 14 chr1 25944308 25944591 -256249073 - AluJb SINE Alu -15 297 1 949 220 39 0 chr1 25944651 25944883 -256248781 - L1ME2 LINE L1 -11 6153 5913 238 327 100 9 chr1 25945878 25945988 -256247676 + MIR SINE MIR 46 165 -97 290 96 0 19 chr1 25945990 25946042 -256247622 + (TG)n Simple_repeat Simple_repeat 2 52 0 1728 193 35 80 chr1 25946357 25946729 -256246935 + L1MB8 LINE L1 5690 6037 -141 1569 187 3 7 chr1 25946729 25947034 -256246630 + AluJb SINE Alu 1 304 0 1728 193 35 80 chr1 25947034 25947170 -256246494 + L1MB8 LINE L1 6037 6178 0 1897 133 0 54 chr1 25947183 25947499 -256246165 + AluSx SINE Alu 3 301 -11 2154 107 0 0 chr1 25947504 25947820 -256245844 + AluSx SINE Alu 1 316 0 348 313 149 0 chr1 25947903 25948037 -256245627 - MIR SINE MIR -65 197 44 375 284 37 37 chr1 25948859 25948993 -256244671 + MIR SINE MIR 67 200 -62 196 304 36 0 chr1 25949306 25949362 -256244302 - L2 LINE L2 0 3272 3215 226 298 192 7 chr1 25949434 25949585 -256244079 - L2 LINE L2 -166 3106 2928 1880 149 10 0 chr1 25949986 25950281 -256243383 - AluSp SINE Alu -15 298 1 197 231 19 0 chr1 25950496 25950548 -256243116 - MIR SINE MIR -78 130 78 182 333 54 0 chr1 25950567 25950660 -256243004 + MIR SINE MIR 22 119 -143 316 257 0 0 chr1 25950824 25950894 -256242770 + MIR SINE MIR 77 146 -116 282 306 40 24 chr1 25950901 25951025 -256242639 - MIR SINE MIR -24 238 113 717 254 52 21 chr1 25951766 25951959 -256241705 + MIR SINE MIR 59 257 -5 2036 115 4 0 chr1 25951992 25952301 -256241363 + AluSx SINE Alu 5 314 0 590 256 17 28 chr1 25952301 25952481 -256241183 + MER63B DNA MER1_type 20 197 -239 773 244 51 0 chr1 25952729 25952926 -256240738 + MER63B DNA MER1_type 228 434 0 216 282 103 0 chr1 25953105 25953183 -256240481 - MIR SINE MIR -70 192 107 297 296 44 30 chr1 25953819 25953954 -256239710 + MIR3 SINE MIR 3 139 -69 257 343 62 38 chr1 25954045 25954255 -256239409 - MIR SINE MIR 0 262 48 505 303 10 27 chr1 25955028 25955206 -256238458 - MIR SINE MIR -50 212 38 428 280 59 37 chr1 25955439 25955669 -256237995 + MIR SINE MIR 9 247 -15 1006 177 10 0 chr1 25956233 25956852 -256236812 + (TGGA)n Simple_repeat Simple_repeat 1 625 0 503 226 8 0 chr1 25956876 25957009 -256236655 + (TGGA)n Simple_repeat Simple_repeat 4 137 0 942 263 30 13 chr1 25957154 25957455 -256236209 + LTR16C LTR ERVL 186 491 0 416 227 11 0 chr1 25957460 25957548 -256236116 + MIR SINE MIR 65 153 -109 214 290 70 30 chr1 25957586 25957674 -256235990 - L2 LINE L2 -27 3245 3154 590 338 26 13 chr1 25957674 25957905 -256235759 + MIR SINE MIR 1 234 -28 209 266 138 32 chr1 25958417 25958511 -256235153 + MER5A DNA MER1_type 24 127 -62 197 147 0 0 chr1 25958549 25958583 -256235081 - MIR SINE MIR -65 143 110 561 197 8 8 chr1 25959369 25959486 -256234178 + MIR SINE MIR 48 164 -98 207 219 0 0 chr1 25959604 25959645 -256234019 - L2 LINE L2 -1 3271 3231 * 299 308 23 8 chr1 25959632 25959764 -256233900 + MIR3 SINE MIR 71 206 -2 2073 116 11 0 chr1 25959831 25960107 -256233557 + AluSx SINE Alu 1 279 -33 1143 48 24 12 chr1 25960111 25960277 -256233387 + (GAAA)n Simple_repeat Simple_repeat 2 169 0 278 234 39 0 chr1 25960402 25960479 -256233185 + MIR SINE MIR 75 154 -108 254 344 32 45 chr1 25960598 25960755 -256232909 - L2 LINE L2 0 3313 3159 1344 144 22 121 chr1 25960833 25961059 -256232605 - AluYb8 SINE Alu -1 317 129 207 0 0 0 chr1 25961059 25961082 -256232582 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1344 144 22 121 chr1 25961082 25961168 -256232496 - AluYb8 SINE Alu -189 129 36 252 291 70 38 chr1 25961169 25961327 -256232337 - L2 LINE L2 -256 3016 2854 1071 230 91 19 chr1 25962082 25962464 -256231200 - L1ME3A LINE L1 -1 6161 5731 2525 152 124 21 chr1 25962474 25962988 -256230676 - MLT1F1 LTR MaLR 0 567 1 272 217 87 0 chr1 25963123 25963192 -256230472 + MIR SINE MIR 90 164 -98 239 321 55 18 chr1 25963510 25963619 -256230045 - L2 LINE L2 -27 3245 3133 204 380 56 26 chr1 25963743 25963938 -256229726 - L2 LINE L2 -416 2898 2698 221 304 0 14 chr1 25964045 25964114 -256229550 + MIR SINE MIR 74 141 -121 438 237 111 15 chr1 25964533 25964668 -256228996 - MIR SINE MIR -33 229 82 216 265 0 0 chr1 25964713 25964762 -256228902 + (CA)n Simple_repeat Simple_repeat 1 49 0 452 265 145 5 chr1 25964795 25964979 -256228685 - MIR SINE MIR -16 246 38 414 0 0 0 chr1 25965676 25965722 -256227942 + (TG)n Simple_repeat Simple_repeat 1 46 0 868 231 41 0 chr1 25966182 25966377 -256227287 - MER63A DNA MER1_type -7 203 1 460 252 99 13 chr1 25966830 25966981 -256226683 + MIR SINE MIR 43 206 -56 1487 138 54 62 chr1 25967077 25967314 -256226350 + AluJb SINE Alu 36 272 -40 2470 92 0 0 chr1 25967314 25967618 -256226046 + AluSx SINE Alu 1 304 -8 1487 138 54 62 chr1 25967618 25967656 -256226008 + AluJb SINE Alu 272 309 -3 249 325 112 10 chr1 25967926 25968119 -256225545 - MIR SINE MIR -16 246 30 271 218 27 82 chr1 25968221 25968331 -256225333 - L2 LINE L2 -298 2974 2871 455 317 116 25 chr1 25968353 25968871 -256224793 - L2 LINE L2 -650 2664 2100 565 307 32 0 chr1 25968887 25969076 -256224588 - MIR SINE MIR -21 241 47 2283 116 0 10 chr1 25969978 25970280 -256223384 + AluSq SINE Alu 1 299 -14 588 313 71 18 chr1 25970282 25970506 -256223158 + MIR SINE MIR 27 262 0 1097 237 123 26 chr1 25970580 25971043 -256222621 + MLT1E2 LTR MaLR 57 538 -88 1665 105 0 4 chr1 25971919 25972147 -256221517 - AluSg/x SINE Alu 0 310 84 23 0 0 0 chr1 25972196 25972219 -256221445 + AT_rich Low_complexity Low_complexity 1 23 0 1089 271 104 66 chr1 25972340 25972852 -256220812 - L1MC4a LINE L1 -1845 5963 5417 2071 137 3 13 chr1 25972852 25973165 -256220499 + AluSx SINE Alu 1 310 -2 1089 271 104 66 chr1 25973165 25973335 -256220329 - L1MC4a LINE L1 -2391 5417 5255 303 309 97 33 chr1 25973432 25973976 -256219688 - L1MC4a LINE L1 -2664 3482 2904 293 284 84 44 chr1 25974154 25974429 -256219235 - HAL1b LINE L1 -395 953 668 331 364 66 28 chr1 25975215 25975534 -256218130 - L2 LINE L2 -1 3271 2941 2278 114 0 0 chr1 25975710 25976031 -256217633 + AluSg SINE Alu 1 310 0 1702 144 58 7 chr1 25976052 25976329 -256217335 + AluJo SINE Alu 13 303 -9 307 263 148 38 chr1 25977629 25977838 -256215826 + MIR SINE MIR 31 262 0 352 301 115 19 chr1 25977874 25978030 -256215634 + MIR3 SINE MIR 29 199 -9 835 265 117 31 chr1 25978051 25978497 -256215167 + L2 LINE L2 2807 3290 -23 217 258 134 10 chr1 25979141 25979238 -256214426 + MIR SINE MIR 81 189 -73 218 200 0 20 chr1 25980999 25981049 -256212615 + MIR SINE MIR 77 125 -137 2514 61 3 0 chr1 25981264 25981561 -256212103 + AluY SINE Alu 1 298 -13 197 65 32 0 chr1 25981567 25981598 -256212066 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 279 79 0 0 chr1 25981972 25982010 -256211654 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 183 277 46 15 chr1 25982276 25982341 -256211323 - L2 LINE L2 0 3313 3247 231 358 84 0 chr1 25982902 25982997 -256210667 + MIR SINE MIR 89 191 -71 935 212 26 0 chr1 25983350 25983543 -256210121 - MER58A DNA MER1_type 0 224 27 561 355 28 47 chr1 25983990 25984135 -256209529 + L2 LINE L2 2961 3107 -165 1347 211 147 20 chr1 25984135 25984529 -256209135 + MLT1J2 LTR MaLR 3 446 -4 561 355 28 47 chr1 25984529 25984701 -256208963 + L2 LINE L2 3107 3272 0 334 294 24 24 chr1 25984979 25985105 -256208559 + MIR SINE MIR 25 150 -58 2300 114 0 16 chr1 25985278 25985595 -256208069 - AluSx SINE Alu 0 312 1 327 203 114 0 chr1 25985714 25985793 -256207871 - L3 LINE CR1 -108 1469 1382 237 65 0 0 chr1 25985905 25985936 -256207728 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2318 102 3 22 chr1 25985938 25986251 -256207413 + AluSp SINE Alu 1 307 -6 415 298 209 0 chr1 25986265 25986423 -256207241 - MIR SINE MIR -34 228 38 227 213 0 0 chr1 25986493 25986540 -256207124 + (TAA)n Simple_repeat Simple_repeat 1 47 0 1030 207 55 17 chr1 25986542 25986779 -256206885 - MIR SINE MIR 0 262 17 227 259 123 0 chr1 25986802 25986883 -256206781 - MIR SINE MIR -10 252 162 5420 176 31 45 chr1 25986891 25986926 -256206738 + L1MC2 LINE L1 3926 3960 -2384 429 20 0 0 chr1 25986926 25986976 -256206688 + (CA)n Simple_repeat Simple_repeat 2 51 0 5420 176 31 45 chr1 25986976 25988852 -256204812 + L1MC2 LINE L1 3960 5782 -562 2430 100 3 0 chr1 25988852 25989161 -256204503 + AluSg SINE Alu 1 310 0 5420 176 31 45 chr1 25989161 25989709 -256203955 + L1MC2 LINE L1 5782 6336 -8 333 333 0 9 chr1 25989778 25989892 -256203772 - MIR SINE MIR -96 166 54 285 288 42 34 chr1 25990848 25990966 -256202698 - MIR SINE MIR -70 192 74 1814 159 3 39 chr1 25990975 25991283 -256202381 + AluJo SINE Alu 1 297 -15 180 254 48 16 chr1 25991688 25991751 -256201913 + MIR SINE MIR 19 83 -125 667 257 85 18 chr1 25991762 25992034 -256201630 + L1ME4a LINE L1 5589 5878 -243 2075 109 3 14 chr1 25992035 25992343 -256201321 + AluSx SINE Alu 1 305 0 1708 122 0 0 chr1 25992471 25992701 -256200963 - AluSg/x SINE Alu -7 303 74 2427 253 63 41 chr1 25992836 25992924 -256200740 + L1ME3A LINE L1 4525 4610 -1560 405 0 0 0 chr1 25992924 25992969 -256200695 + (TG)n Simple_repeat Simple_repeat 1 45 0 2427 253 63 41 chr1 25992969 25993150 -256200514 + L1ME3A LINE L1 4610 4786 -1384 1903 167 0 3 chr1 25993150 25993443 -256200221 + AluJb SINE Alu 1 292 -20 2427 253 63 41 chr1 25993443 25993943 -256199721 + L1ME3A LINE L1 4786 5274 -896 2404 86 0 3 chr1 25993943 25994245 -256199419 + AluSx SINE Alu 1 301 -11 2427 253 63 41 chr1 25994245 25994323 -256199341 + L1ME3A LINE L1 5274 5349 -821 2524 66 0 10 chr1 25994323 25994627 -256199037 + AluY SINE Alu 1 301 -10 2427 253 63 41 chr1 25994627 25995164 -256198500 + L1ME3A LINE L1 5349 5950 -220 2251 120 0 0 chr1 25995164 25995463 -256198201 + AluSx SINE Alu 1 299 -13 2427 253 63 41 chr1 25995463 25995596 -256198068 + L1ME3A LINE L1 5950 6079 -91 231 282 245 37 chr1 25995907 25996262 -256197402 + L2 LINE L2 2844 3272 0 1187 228 161 21 chr1 25996462 25996848 -256196816 - MLT1K LTR MaLR -3 585 146 269 353 140 14 chr1 25996908 25997129 -256196535 - MIR SINE MIR 0 262 14 1065 217 43 4 chr1 25997826 25998056 -256195608 + MIR SINE MIR 6 244 -18 181 328 16 0 chr1 25998174 25998238 -256195426 - L2 LINE L2 -2 3270 3206 295 294 11 11 chr1 25999086 25999178 -256194486 - L2 LINE L2 -211 3061 2970 209 169 102 17 chr1 25999559 25999618 -256194046 + L2 LINE L2 3195 3258 -14 2404 108 0 0 chr1 25999665 25999970 -256193694 + AluSx SINE Alu 1 305 -7 261 291 0 38 chr1 26000212 26000291 -256193373 + G-rich Low_complexity Low_complexity 4 79 0 347 302 58 0 chr1 26000352 26000491 -256193173 + MIR SINE MIR 82 228 -34 195 261 0 0 chr1 26000468 26000514 -256193150 + L2 LINE L2 3210 3255 -17 * 224 79 26 0 chr1 26000581 26000619 -256193045 - MIR SINE MIR -112 150 112 1858 136 0 70 chr1 26000755 26000908 -256192756 + AluJb SINE Alu 1 122 -190 2091 123 3 13 chr1 26000908 26001208 -256192456 + AluSx SINE Alu 1 297 -15 1858 136 0 70 chr1 26001208 26001370 -256192294 + AluJb SINE Alu 122 294 -18 369 283 90 36 chr1 26001530 26001696 -256191968 - MER5A DNA MER1_type 0 189 15 362 327 48 18 chr1 26001939 26002107 -256191557 - MIR SINE MIR -88 174 2 190 160 40 0 chr1 26002113 26002163 -256191501 + GA-rich Low_complexity Low_complexity 1 52 0 340 295 134 0 chr1 26002781 26002930 -256190734 + MIR SINE MIR 15 183 -79 275 71 24 0 chr1 26003000 26003042 -256190622 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 200 289 0 26 chr1 26003046 26003122 -256190542 + MIR SINE MIR 49 122 -86 323 267 30 111 chr1 26003335 26003470 -256190194 - L1MC4 LINE L1 -1361 6681 6558 2158 113 25 0 chr1 26003471 26003755 -256189909 - AluSx SINE Alu -21 291 1 1015 182 5 64 chr1 26004055 26004275 -256189389 + AluJo SINE Alu 1 207 -105 479 139 0 0 chr1 26004345 26004417 -256189247 + AluJo SINE Alu 211 282 -30 189 0 0 0 chr1 26004428 26004449 -256189215 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 197 289 0 72 chr1 26004449 26004532 -256189132 - MIR SINE MIR -118 144 68 385 299 126 10 chr1 26004916 26005123 -256188541 + MIR SINE MIR 21 251 -11 625 164 0 0 chr1 26005183 26005287 -256188377 - AluSp/q SINE Alu -18 295 192 231 357 56 25 chr1 26005748 26006034 -256187630 - L2 LINE L2 -420 2894 2600 2121 105 6 62 chr1 26006092 26006415 -256187249 + AluSx SINE Alu 1 305 -7 1419 131 4 49 chr1 26006415 26006660 -256187004 + AluSq SINE Alu 74 307 -6 3462 145 70 39 chr1 26006670 26007001 -256186663 - L1MB3 LINE L1 0 6183 5864 2367 79 0 0 chr1 26007001 26007292 -256186372 - AluY SINE Alu 0 311 21 3462 145 70 39 chr1 26007292 26007678 -256185986 - L1MB3 LINE L1 -319 5864 5444 376 296 146 46 chr1 26007691 26008123 -256185541 - L2 LINE L2 -805 2509 2035 860 254 114 64 chr1 26008149 26008605 -256185059 - MLT1J LTR MaLR -9 502 24 468 325 103 14 chr1 26009359 26009651 -256184013 - L2 LINE L2 -2428 886 569 357 232 70 2 chr1 26009895 26010008 -256183656 - MIR SINE MIR -63 145 28 283 265 128 10 chr1 26009959 26010061 -256183603 + MIR SINE MIR 32 145 -63 * 235 335 46 31 chr1 26010418 26010612 -256183052 + L2 LINE L2 2636 2832 -482 22 0 0 0 chr1 26010795 26010817 -256182847 + AT_rich Low_complexity Low_complexity 1 22 0 304 319 51 6 chr1 26011480 26011637 -256182027 - MIR3 SINE MIR -42 166 3 735 235 24 25 chr1 26011680 26011883 -256181781 - MIR SINE MIR -6 256 46 552 322 57 1 chr1 26011940 26012174 -256181490 - MIR SINE MIR 0 262 15 1190 169 15 5 chr1 26012527 26012780 -256180884 - L1MB3 LINE L1 -199 5984 5762 249 170 57 0 chr1 26013370 26013423 -256180241 + GA-rich Low_complexity Low_complexity 3 58 0 2096 103 0 14 chr1 26014021 26014313 -256179351 - AluSg SINE Alu -21 289 2 503 282 77 10 chr1 26014732 26014927 -256178737 + MIR SINE MIR 43 250 -12 726 272 27 2 chr1 26015562 26015755 -256177909 + MIR SINE MIR 1 196 -58 294 217 61 87 chr1 26015807 26015829 -256177835 + Charlie8 DNA MER1_type 98 119 -222 2142 52 0 31 chr1 26015829 26016115 -256177549 + AluY SINE Alu 35 311 0 294 217 61 87 chr1 26016115 26016207 -256177457 + Charlie8 DNA MER1_type 119 209 -132 894 212 0 0 chr1 26016273 26016443 -256177221 + FRAM SINE Alu 1 169 -7 481 287 35 14 chr1 26016443 26016586 -256177078 + MER5B DNA MER1_type 33 178 0 411 351 84 44 chr1 26016874 26016966 -256176698 + L2 LINE L2 2882 2969 -303 2122 114 0 10 chr1 26016966 26017265 -256176399 - AluSx SINE Alu -16 296 1 411 351 84 44 chr1 26017265 26017539 -256176125 + L2 LINE L2 2969 3263 -9 506 238 34 14 chr1 26017693 26017840 -256175824 - MLT1K LTR MaLR -329 259 110 270 252 37 19 chr1 26018294 26018401 -256175263 - LTR67 LTR ERVL 0 557 449 460 262 91 27 chr1 26019053 26019240 -256174424 - MLT1K LTR MaLR -17 571 373 243 286 229 0 chr1 26019284 26019389 -256174275 - MLT1K LTR MaLR -358 230 102 346 304 113 43 chr1 26019496 26019726 -256173938 - MIR SINE MIR -5 257 12 248 263 0 66 chr1 26019786 26019862 -256173802 - L2 LINE L2 -3 3269 3199 1823 124 27 40 chr1 26019879 26020177 -256173487 - AluJo SINE Alu -18 294 1 201 304 226 9 chr1 26020273 26020388 -256173276 - MIR SINE MIR -47 215 76 377 240 10 34 chr1 26021400 26021496 -256172168 + MIR SINE MIR 58 143 -91 2284 104 0 0 chr1 26021496 26021795 -256171869 + AluSq SINE Alu 1 299 -14 377 240 10 34 chr1 26021795 26021827 -256171837 + MIR SINE MIR 143 174 -60 811 345 36 21 chr1 26021840 26022229 -256171435 + L2 LINE L2 2439 2833 -481 1865 122 35 65 chr1 26022305 26022674 -256170990 + THE1B LTR MaLR 1 358 -6 261 259 0 0 chr1 26022682 26022740 -256170924 + L2 LINE L2 3007 3064 -208 2043 118 0 55 chr1 26022748 26023078 -256170586 - AluSx SINE Alu 0 312 1 341 286 82 41 chr1 26023472 26023643 -256170021 + L2 LINE L2 3094 3271 -1 228 253 55 33 chr1 26024327 26024418 -256169246 + MIR SINE MIR 34 126 -82 223 302 269 11 chr1 26025538 26025720 -256167944 + MIR SINE MIR 22 250 -12 1509 182 176 21 chr1 26025737 26026077 -256167587 + MSTD LTR MaLR 4 396 0 684 251 100 13 chr1 26026330 26026569 -256167095 - MER115 DNA AcHobo -318 375 116 207 255 216 0 chr1 26026962 26027064 -256166600 + MER5A DNA MER1_type 66 189 0 557 298 125 48 chr1 26027089 26027337 -256166327 - L2 LINE L2 -3 3269 3003 796 65 0 9 chr1 26028133 26028267 -256165397 + SVA Other Other 1279 1386 0 221 240 240 21 chr1 26028274 26028370 -256165294 + MIR SINE MIR 29 145 -63 416 347 42 28 chr1 26028795 26029008 -256164656 + MIR SINE MIR 20 235 -27 2200 72 0 10 chr1 26029051 26029383 -256164281 - AluY SINE Alu 0 311 1 2267 93 0 3 chr1 26029385 26029687 -256163977 - AluSg SINE Alu -9 301 1 462 223 151 59 chr1 26029876 26030114 -256163550 - MIR SINE MIR -1 261 2 204 280 20 20 chr1 26030599 26030699 -256162965 - L2 LINE L2 -200 3072 2973 234 150 0 0 chr1 26030820 26030860 -256162804 + (GGGA)n Simple_repeat Simple_repeat 4 43 0 272 291 19 19 chr1 26030938 26031041 -256162623 - MLT1I LTR MaLR -3 406 304 457 222 10 48 chr1 26031130 26031235 -256162429 - MLT1I LTR MaLR -277 132 38 314 293 66 14 chr1 26031534 26031680 -256161984 - MIR3 SINE MIR -22 186 28 404 219 143 8 chr1 26031856 26031975 -256161689 + MIR SINE MIR 20 154 -108 2021 60 0 0 chr1 26032182 26032432 -256161232 - AluSg SINE Alu -2 308 59 205 51 51 0 chr1 26083026 26083065 -256110599 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 404 171 171 38 chr1 26083141 26083246 -256110418 - MIR SINE MIR -63 145 27 273 191 101 4 chr1 26083963 26084044 -256109620 - MIR SINE MIR -69 139 54 269 186 198 23 chr1 26084583 26084669 -256108995 + MIR SINE MIR 32 132 -76 488 271 42 9 chr1 26084837 26085037 -256108627 + MIR SINE MIR 26 229 -33 788 210 45 25 chr1 26085731 26085931 -256107733 - MER20 DNA MER1_type 0 219 16 267 238 32 0 chr1 26086059 26086122 -256107542 - MIR SINE MIR -86 122 58 323 238 10 50 chr1 26086243 26086344 -256107320 + L2 LINE L2 3175 3271 -1 202 333 0 0 chr1 26087597 26087651 -256106013 - MIR SINE MIR -112 96 43 331 300 73 9 chr1 26088901 26089011 -256104653 + MIR SINE MIR 29 145 -117 321 270 212 1 chr1 26089646 26089812 -256103852 - MIR3 SINE MIR -54 154 2 209 339 34 0 chr1 26091085 26091144 -256102520 - L2 LINE L2 -14 3258 3198 413 218 59 15 chr1 26091191 26091322 -256102342 + MIR SINE MIR 15 156 -62 228 351 43 0 chr1 26091841 26091935 -256101729 - MIR3 SINE MIR -41 167 70 242 314 66 29 chr1 26092603 26092740 -256100924 - MIR SINE MIR -8 254 113 216 316 13 13 chr1 26092946 26093022 -256100642 + MER5A DNA MER1_type 110 185 -4 254 285 234 0 chr1 26093039 26093197 -256100467 - L3 LINE CR1 -86 1491 1297 498 216 133 55 chr1 26093216 26093397 -256100267 + MIR SINE MIR 29 223 -39 249 189 57 0 chr1 26093633 26093686 -256099978 - MIR SINE MIR -59 149 94 330 318 15 38 chr1 26095013 26095145 -256098519 - MIR3 SINE MIR -77 131 3 541 148 16 94 chr1 26095238 26095301 -256098363 - MIR SINE MIR -135 127 77 2395 71 0 3 chr1 26095301 26095612 -256098052 + AluY SINE Alu 1 310 -1 541 148 16 94 chr1 26095612 26095676 -256097988 - MIR SINE MIR -185 77 10 237 301 86 43 chr1 26095699 26095862 -256097802 - L2 LINE L2 -167 3105 2936 502 219 6 43 chr1 26096545 26096709 -256096955 - L1MC4 LINE L1 -3 8039 7882 353 352 16 0 chr1 26097411 26097536 -256096128 + MIR SINE MIR 86 212 -50 310 348 52 32 chr1 26097821 26098008 -256095656 + MIR SINE MIR 16 211 -51 338 209 48 38 chr1 26098262 26098367 -256095297 + L2 LINE L2 3202 3307 -6 193 234 21 0 chr1 26098654 26098701 -256094963 + MIR3 SINE MIR 152 199 -9 301 272 184 15 chr1 26099143 26099279 -256094385 - MIR SINE MIR -103 159 1 340 340 106 11 chr1 26099625 26099813 -256093851 + MIR SINE MIR 20 225 -37 203 314 38 31 chr1 26099860 26100019 -256093645 - L2 LINE L2 -228 3044 2885 307 374 63 44 chr1 26100245 26100515 -256093149 + L3b LINE CR1 1113 1387 -196 1011 239 56 16 chr1 26100578 26100829 -256092835 + MIR SINE MIR 2 262 0 292 348 8 17 chr1 26101924 26102042 -256091622 + MIR SINE MIR 36 152 -110 249 274 88 29 chr1 26102240 26102342 -256091322 + MIR SINE MIR 33 140 -68 364 316 281 0 chr1 26102383 26102554 -256091110 + MIR SINE MIR 10 228 -34 468 35 0 0 chr1 26105091 26105149 -256088515 + (CA)n Simple_repeat Simple_repeat 2 59 0 235 280 129 32 chr1 26105313 26105406 -256088258 - MIR SINE MIR -5 257 156 1064 229 0 0 chr1 26107855 26108065 -256085599 + AluJb SINE Alu 94 303 -9 413 299 22 15 chr1 26108093 26108230 -256085434 + MIR SINE MIR 7 144 -118 2036 132 3 7 chr1 26110476 26110771 -256082893 - AluSx SINE Alu -18 294 1 247 198 68 9 chr1 26111175 26111258 -256082406 - MIR SINE MIR -66 142 87 2520 65 0 10 chr1 26113196 26113502 -256080162 - AluY SINE Alu -8 303 1 2206 105 0 7 chr1 26113738 26114034 -256079630 + AluSg SINE Alu 6 299 -11 510 143 0 0 chr1 26114034 26114104 -256079560 + AluJo/FRAM SINE Alu 212 281 -31 290 94 19 38 chr1 26114115 26114168 -256079496 - AluSc SINE Alu -168 131 80 498 234 154 27 chr1 26114451 26114639 -256079025 + MIR SINE MIR 49 260 -2 325 285 99 20 chr1 26116223 26116374 -256077290 - MIR SINE MIR -74 188 26 2409 97 0 0 chr1 26116423 26116731 -256076933 + AluSg SINE Alu 1 308 -2 185 290 166 10 chr1 26117082 26117240 -256076424 + MIR SINE MIR 4 191 -64 23 33 0 0 chr1 26118140 26118170 -256075494 + AT_rich Low_complexity Low_complexity 1 30 0 331 275 128 0 chr1 26118603 26118747 -256074917 - MIR SINE MIR -52 210 50 2053 170 76 46 chr1 26118962 26119461 -256074203 + L1MB8 LINE L1 5660 6173 -5 256 217 133 42 chr1 26119834 26119954 -256073710 + L2 LINE L2 3117 3247 -66 2664 65 23 54 chr1 26119965 26120352 -256073312 + THE1C LTR MaLR 1 375 0 799 248 92 0 chr1 26121315 26121521 -256072143 - MIR SINE MIR -36 226 2 326 280 119 18 chr1 26121724 26121892 -256071772 - MIR SINE MIR -77 185 1 2343 88 0 7 chr1 26122158 26122454 -256071210 + AluSp SINE Alu 1 294 -19 319 252 122 26 chr1 26122969 26123084 -256070580 - MIR SINE MIR -63 145 20 190 182 0 68 chr1 26123703 26123747 -256069917 - L2 LINE L2 -18 3254 3214 * 468 301 66 0 chr1 26123713 26123896 -256069768 - MIR SINE MIR -19 243 49 231 167 0 0 chr1 26124276 26124318 -256069346 + A-rich Low_complexity Low_complexity 1 42 0 453 205 144 107 chr1 26124326 26124541 -256069123 + MIR SINE MIR 22 244 -18 328 258 55 16 chr1 26124892 26125020 -256068644 + MIR SINE MIR 116 248 -14 1889 135 17 0 chr1 26125267 26125555 -256068109 + AluJb SINE Alu 1 293 -19 27 0 0 0 chr1 26125698 26125725 -256067939 + AT_rich Low_complexity Low_complexity 1 27 0 268 243 29 78 chr1 26125865 26125968 -256067696 + MER5A DNA MER1_type 18 115 -74 2028 105 54 0 chr1 26126779 26127055 -256066609 + AluSx SINE Alu 1 291 -21 221 305 50 57 chr1 26127109 26127250 -256066414 + MIR3 SINE MIR 27 166 -42 295 252 57 89 chr1 26127385 26127508 -256066156 + MER91B DNA MER1_type 12 130 -60 271 182 76 15 chr1 26127548 26127614 -256066050 + MER91B DNA MER1_type 119 188 -2 1904 136 0 4 chr1 26128062 26128372 -256065292 + AluSg SINE Alu 1 309 0 2467 72 0 0 chr1 26128752 26129043 -256064621 + AluY SINE Alu 1 291 -20 2831 10 0 0 chr1 26129724 26130026 -256063638 + AluY SINE Alu 1 302 -9 310 280 27 0 chr1 26130932 26131007 -256062657 + MER5B DNA MER1_type 3 79 -99 180 0 0 0 chr1 26132507 26132527 -256061137 + (A)n Simple_repeat Simple_repeat 1 20 0 2084 111 0 0 chr1 26138196 26138458 -256055206 + AluSx SINE Alu 22 283 -29 3019 195 77 54 chr1 26138598 26139066 -256054598 + L1MB5 LINE L1 4353 4808 -1366 2265 128 0 0 chr1 26139066 26139371 -256054293 - AluSx SINE Alu -7 305 1 3019 195 77 54 chr1 26139371 26140517 -256053147 + L1MB5 LINE L1 4808 5999 -175 477 161 0 0 chr1 26140527 26140608 -256053056 + L1M4 LINE L1 4815 4895 -1251 2188 121 0 7 chr1 26140702 26141000 -256052664 - AluSx SINE Alu -16 296 1 2410 89 0 3 chr1 26141141 26141445 -256052219 + AluSp SINE Alu 2 304 -9 2217 121 0 0 chr1 26143143 26143432 -256050232 - AluSg SINE Alu -21 289 1 283 257 49 109 chr1 26144056 26144239 -256049425 + MIR3 SINE MIR 31 202 -6 2333 93 13 13 chr1 26144882 26145194 -256048470 + AluSx SINE Alu 1 312 0 301 202 143 0 chr1 26146606 26146690 -256046974 + HsTC2 DNA Tc2 8 103 -1795 34 24 0 0 chr1 26146795 26146836 -256046828 + AT_rich Low_complexity Low_complexity 1 41 0 1633 148 10 61 chr1 26147151 26147462 -256046202 - AluJb SINE Alu -17 295 1 879 245 30 17 chr1 26147629 26147866 -256045798 - MIR SINE MIR 0 262 23 204 40 0 0 chr1 26147869 26147894 -256045770 + (TG)n Simple_repeat Simple_repeat 2 26 0 1849 117 8 0 chr1 26147895 26148143 -256045521 - AluSx SINE Alu -62 250 1 594 246 89 30 chr1 26148492 26148695 -256044969 + MIR SINE MIR 46 260 -2 461 250 10 0 chr1 26148864 26148960 -256044704 - MER2 DNA MER2_type -247 98 2 2067 166 81 75 chr1 26149089 26149596 -256044068 + LTR54 LTR ERV1 1 510 0 652 168 18 9 chr1 26149607 26149720 -256043944 + AluJb SINE Alu 5 118 -194 2193 110 0 13 chr1 26149946 26150254 -256043410 + AluY SINE Alu 2 305 -6 1769 153 40 0 chr1 26150370 26150644 -256043020 + AluJo SINE Alu 1 285 -27 2418 100 0 7 chr1 26150756 26151066 -256042598 - AluSx SINE Alu -4 308 1 1596 212 137 90 chr1 26151487 26151924 -256041740 + MER21B LTR ERV1 19 499 -364 2557 72 0 0 chr1 26151924 26152229 -256041435 + AluY SINE Alu 1 305 -6 1596 212 137 90 chr1 26152229 26152455 -256041209 + MER21B LTR ERV1 499 713 -150 2625 51 0 3 chr1 26152977 26153288 -256040376 + AluY SINE Alu 1 310 -1 4465 56 27 34 chr1 26153288 26153557 -256040107 - LTR10C LTR ERV1 -5 586 317 2468 93 0 3 chr1 26153557 26153869 -256039795 + AluY SINE Alu 1 311 0 4465 56 27 34 chr1 26153869 26154189 -256039475 - LTR10C LTR ERV1 -274 317 1 1638 190 23 16 chr1 26154233 26154543 -256039121 + AluSx SINE Alu 1 312 0 1581 175 7 38 chr1 26154554 26154845 -256038819 + AluJb SINE Alu 1 282 -30 2365 105 3 0 chr1 26154845 26155150 -256038514 + AluSx SINE Alu 1 306 -6 388 233 41 48 chr1 26155222 26155368 -256038296 - L2 LINE L2 0 3313 3169 724 183 0 28 chr1 26156225 26156367 -256037297 - AluJb SINE Alu -16 296 159 1599 175 31 64 chr1 26156475 26156680 -256036984 + MLT1A1 LTR MaLR 14 203 -162 1611 99 43 96 chr1 26156680 26157003 -256036661 + AluSx SINE Alu 5 310 -2 1599 175 31 64 chr1 26157003 26157157 -256036507 + MLT1A1 LTR MaLR 203 361 -4 406 310 74 28 chr1 26157188 26157297 -256036367 + L2 LINE L2 2827 2930 -383 1896 99 4 0 chr1 26157297 26157539 -256036125 - AluSp SINE Alu -70 243 1 406 310 74 28 chr1 26157539 26157755 -256035909 + L2 LINE L2 2930 3167 -146 936 188 0 0 chr1 26157934 26158088 -256035576 - AluSg/x SINE Alu -18 294 141 1792 114 12 4 chr1 26158281 26158527 -256035137 + AluSx SINE Alu 21 268 -44 331 322 122 22 chr1 26158585 26158765 -256034899 + MIR SINE MIR 49 246 -16 297 216 91 23 chr1 26159170 26159258 -256034406 + MIR SINE MIR 82 175 -87 1873 96 38 45 chr1 26159341 26159632 -256034032 + AluSx SINE Alu 9 297 -15 1836 154 7 17 chr1 26159730 26160028 -256033636 + AluSx SINE Alu 1 295 -17 2105 113 3 3 chr1 26160301 26160593 -256033071 + AluSx SINE Alu 1 292 -20 190 261 65 0 chr1 26160933 26160979 -256032685 - L2 LINE L2 -9 3263 3215 181 0 0 0 chr1 26161555 26161575 -256032089 + (T)n Simple_repeat Simple_repeat 1 180 0 763 129 0 79 chr1 26161575 26161715 -256031949 - FLAM_C SINE Alu 0 133 5 2228 120 10 3 chr1 26162085 26162394 -256031270 + AluSx SINE Alu 1 311 -1 2309 82 0 52 chr1 26162460 26162788 -256030876 + AluSx SINE Alu 1 311 -1 2508 78 0 3 chr1 26162890 26163196 -256030468 - AluSq SINE Alu -8 305 1 2161 112 20 0 chr1 26163965 26164261 -256029403 - AluSx SINE Alu -10 302 1 2365 84 14 0 chr1 26164477 26164774 -256028890 + AluSx SINE Alu 1 301 -11 1312 65 0 0 chr1 26165038 26165192 -256028472 + AluSp SINE Alu 144 297 -16 1648 171 9 35 chr1 26165196 26165512 -256028152 + AluJo SINE Alu 1 308 -4 2241 89 3 54 chr1 26165522 26165835 -256027829 + AluSp SINE Alu 1 297 -16 394 277 226 7 chr1 26166087 26166224 -256027440 - MER5A DNA MER1_type -9 180 14 2266 97 0 16 chr1 26166292 26166600 -256027064 + AluSx SINE Alu 1 303 -9 2233 120 3 0 chr1 26166637 26166936 -256026728 + AluSp SINE Alu 1 300 -13 998 235 45 20 chr1 26167048 26167295 -256026369 - MIR SINE MIR -3 259 7 473 284 39 0 chr1 26168139 26168266 -256025398 - L2 LINE L2 0 3313 3182 1744 168 14 7 chr1 26168538 26168830 -256024834 + AluJb SINE Alu 6 299 -13 2695 51 0 0 chr1 26169068 26169379 -256024285 + AluY SINE Alu 1 311 0 294 29 0 0 chr1 26169398 26169433 -256024231 + (TA)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr1 26169476 26169501 -256024163 + AT_rich Low_complexity Low_complexity 1 25 0 1393 117 0 93 chr1 26169868 26170125 -256023539 + AluJb SINE Alu 64 296 -16 219 308 8 0 chr1 26171296 26171416 -256022248 + C-rich Low_complexity Low_complexity 4 124 0 250 275 101 81 chr1 26171848 26171887 -256021777 - MIR SINE MIR -27 235 198 2056 115 10 13 chr1 26171887 26172192 -256021472 - AluSx SINE Alu -8 304 1 250 275 101 81 chr1 26172192 26172301 -256021363 - MIR SINE MIR -64 198 84 1716 156 32 7 chr1 26172458 26172778 -256020886 - AluJb SINE Alu 0 327 1 2582 47 0 3 chr1 26172979 26173279 -256020385 + AluY SINE Alu 1 299 -12 2377 101 0 10 chr1 26173373 26173681 -256019983 - AluSg SINE Alu -5 305 1 727 254 64 18 chr1 26173708 26173928 -256019736 - MIR SINE MIR 0 262 33 2174 115 0 32 chr1 26173992 26174305 -256019359 + AluSq SINE Alu 1 303 -10 2197 113 10 0 chr1 26174305 26174595 -256019069 + AluSq SINE Alu 1 294 -19 941 76 0 69 chr1 26174632 26174763 -256018901 + FLAM_C SINE Alu 12 133 -10 284 227 140 67 chr1 26174777 26174927 -256018737 - L1ME LINE L1 -248 5873 5713 1468 266 105 21 chr1 26175384 26175900 -256017764 + MLT1K LTR MaLR 27 585 -3 2489 78 3 3 chr1 26176006 26176312 -256017352 - AluSx SINE Alu -5 307 2 1922 134 20 36 chr1 26176525 26176830 -256016834 + AluJb SINE Alu 3 302 -10 2368 86 3 3 chr1 26176834 26177137 -256016527 + AluSc SINE Alu 1 303 -6 251 336 18 18 chr1 26177154 26177267 -256016397 + L2 LINE L2 2674 2786 -528 1886 126 100 0 chr1 26177267 26177537 -256016127 + AluSg SINE Alu 1 297 -13 311 57 0 75 chr1 26177608 26177661 -256016003 - MLT2B1 LTR ERVL 0 520 472 2165 129 3 0 chr1 26177691 26177993 -256015671 + AluSx SINE Alu 1 303 -9 289 155 72 0 chr1 26178016 26178113 -256015551 + (TA)n Simple_repeat Simple_repeat 1 104 0 1561 194 80 65 chr1 26178119 26178592 -256015072 - MLT2B1 LTR ERVL -40 480 1 265 225 61 52 chr1 26179558 26179678 -256013986 + L1ME3 LINE L1 5961 6081 -81 2049 123 22 0 chr1 26179755 26180058 -256013606 + AluSx SINE Alu 1 309 0 2167 111 21 0 chr1 26180068 26180356 -256013308 + AluSx SINE Alu 1 294 -18 1287 124 33 19 chr1 26180361 26180571 -256013093 + AluJo SINE Alu 87 299 -13 757 298 158 23 chr1 26181092 26181535 -256012129 + L2 LINE L2 2807 3309 -4 2460 72 0 3 chr1 26181541 26181846 -256011818 + AluY SINE Alu 1 304 -7 2140 99 0 24 chr1 26181929 26182246 -256011418 + AluSx SINE Alu 5 312 0 662 250 109 16 chr1 26182310 26182502 -256011162 - MIR SINE MIR -5 257 48 556 256 19 13 chr1 26182757 26182913 -256010751 + L1ME3A LINE L1 5994 6150 -20 2368 96 0 16 chr1 26182946 26183249 -256010415 - AluSg SINE Alu -12 298 1 1641 139 0 137 chr1 26183251 26183595 -256010069 - AluJb SINE Alu -15 297 1 1792 184 7 0 chr1 26183595 26183900 -256009764 - AluJo SINE Alu -5 307 1 280 294 44 0 chr1 26184121 26184189 -256009475 - MIR SINE MIR -71 137 67 2449 97 0 0 chr1 26184663 26184972 -256008692 + AluSc SINE Alu 1 309 0 2588 74 0 0 chr1 26184974 26185283 -256008381 + AluY SINE Alu 1 309 -2 196 271 0 0 chr1 26185353 26185401 -256008263 - L2 LINE L2 -73 3240 3193 249 296 40 99 chr1 26185515 26185608 -256008056 - L2 LINE L2 -182 3090 3008 1497 163 81 8 chr1 26185608 26185866 -256007798 + AluJb SINE Alu 33 309 -3 249 296 40 99 chr1 26185866 26185924 -256007740 - L2 LINE L2 -264 3008 2948 2048 148 13 0 chr1 26186910 26187214 -256006450 - AluSx SINE Alu -4 308 1 274 176 11 11 chr1 26187491 26187582 -256006082 + (TA)n Simple_repeat Simple_repeat 1 91 0 1746 149 30 4 chr1 26187582 26187850 -256005814 - AluJo SINE Alu -20 292 18 2343 65 7 7 chr1 26187863 26188153 -256005511 - AluY SINE Alu -21 290 1 2332 99 0 10 chr1 26188381 26188694 -256004970 + AluSg SINE Alu 1 310 0 442 306 139 14 chr1 26188741 26188957 -256004707 + MIR SINE MIR 10 252 -10 2319 109 3 0 chr1 26189011 26189314 -256004350 - AluSp SINE Alu -9 304 1 2378 101 0 0 chr1 26189371 26189669 -256003995 - AluSx SINE Alu -14 298 1 1170 163 31 66 chr1 26189814 26190041 -256003623 + MER20 DNA MER1_type 1 219 0 1908 173 0 7 chr1 26190074 26190375 -256003289 + AluJb SINE Alu 1 299 -13 2275 106 10 0 chr1 26190383 26190675 -256002989 + AluSq SINE Alu 10 304 -9 2414 99 0 0 chr1 26190677 26190981 -256002683 + AluSx SINE Alu 1 304 -8 1776 138 80 4 chr1 26191246 26191522 -256002142 + AluSg SINE Alu 1 297 -13 2310 67 42 3 chr1 26191701 26191985 -256001679 - AluY SINE Alu -16 295 1 30 0 0 0 chr1 26191987 26192017 -256001647 + AT_rich Low_complexity Low_complexity 1 30 0 2423 75 3 0 chr1 26192070 26192364 -256001300 - AluY SINE Alu -16 295 1 21 0 0 0 chr1 26193233 26193254 -256000410 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 26193270 26193293 -256000371 + (A)n Simple_repeat Simple_repeat 1 23 0 2019 149 7 0 chr1 26194428 26194723 -255998941 - AluSg SINE Alu -13 297 1 618 129 50 0 chr1 26194887 26194988 -255998676 + FAM SINE Alu 77 182 -3 1122 88 0 0 chr1 26194988 26195124 -255998540 + AluSq/x SINE Alu 1 136 -176 2541 73 0 0 chr1 26195125 26195426 -255998238 + AluSp SINE Alu 1 301 -12 558 111 44 2 chr1 26195426 26195633 -255998031 + AluJb SINE Alu 55 302 -10 2153 74 47 30 chr1 26195986 26196285 -255997379 - AluSc SINE Alu -5 304 1 378 273 130 78 chr1 26196731 26197101 -255996563 + L1ME4a LINE L1 5721 6109 -12 2298 108 7 7 chr1 26197268 26197574 -255996090 - AluSx SINE Alu -5 307 2 2135 110 7 16 chr1 26197746 26198055 -255995609 + AluSx SINE Alu 1 306 -6 352 270 63 24 chr1 26198221 26198347 -255995317 - MIR SINE MIR -48 214 84 247 275 11 62 chr1 26198970 26199083 -255994581 + MIR SINE MIR 73 180 -28 2192 102 0 0 chr1 26199414 26199699 -255993965 + AluSx SINE Alu 1 285 -27 292 227 62 82 chr1 26200130 26200227 -255993437 + MIR3 SINE MIR 106 200 -8 442 304 180 58 chr1 26200378 26200485 -255993179 + L2 LINE L2 2827 2920 -393 2602 74 0 3 chr1 26200485 26200796 -255992868 - AluSq SINE Alu -3 310 1 2127 138 0 0 chr1 26200796 26201085 -255992579 - AluSx SINE Alu -23 289 1 442 304 180 58 chr1 26201085 26201356 -255992308 + L2 LINE L2 2920 3157 -156 2575 70 0 3 chr1 26201356 26201668 -255991996 + AluY SINE Alu 1 311 0 442 304 180 58 chr1 26201668 26201680 -255991984 + L2 LINE L2 3157 3166 -147 2528 81 0 0 chr1 26201680 26201988 -255991676 + AluSq SINE Alu 1 308 -5 442 304 180 58 chr1 26201988 26202028 -255991636 + L2 LINE L2 3166 3313 0 1951 152 3 10 chr1 26202049 26202351 -255991313 + AluJo SINE Alu 1 300 -12 2170 142 3 0 chr1 26202354 26202657 -255991007 + AluSx SINE Alu 3 306 -6 2256 207 29 8 chr1 26202674 26203157 -255990507 - LTR65 LTR ERV1 -6 663 171 1752 90 5 0 chr1 26203157 26203379 -255990285 - AluSq SINE Alu -3 310 88 1208 113 18 0 chr1 26203405 26203573 -255990091 - AluSq SINE Alu -11 302 132 2559 72 3 0 chr1 26203646 26203952 -255989712 - AluSp SINE Alu -6 307 1 2232 139 0 0 chr1 26203957 26204260 -255989404 - AluSx SINE Alu -9 303 1 2377 76 7 0 chr1 26204324 26204612 -255989052 + AluSg SINE Alu 1 290 -20 1889 103 0 27 chr1 26205237 26205500 -255988164 + AluSx SINE Alu 37 292 -20 539 308 67 20 chr1 26205649 26205939 -255987725 + L1ME3 LINE L1 5555 5865 -297 2107 126 36 0 chr1 26205939 26206061 -255987603 + AluSx SINE Alu 1 117 -195 522 83 0 0 chr1 26206061 26206133 -255987531 + (TA)n Simple_repeat Simple_repeat 2 73 0 2107 126 36 0 chr1 26206133 26206311 -255987353 + AluSx SINE Alu 117 312 0 539 308 67 20 chr1 26206311 26206364 -255987300 + L1ME3 LINE L1 5865 5914 -248 591 215 68 6 chr1 26206478 26206641 -255987023 - MLT1I LTR MaLR -2 407 235 1538 188 13 40 chr1 26206727 26207031 -255986633 - AluJb SINE Alu -16 296 1 1806 140 3 62 chr1 26207046 26207367 -255986297 - AluJb SINE Alu -10 302 1 245 254 0 0 chr1 26207367 26207426 -255986238 - MLT1I LTR MaLR -310 99 41 3029 130 35 58 chr1 26207507 26207692 -255985972 + MER49 LTR ERV1 1 189 -734 2150 106 0 26 chr1 26207692 26207994 -255985670 + AluSx SINE Alu 1 294 -18 3029 130 35 58 chr1 26207994 26208142 -255985522 + MER49 LTR ERV1 189 339 -584 1734 143 63 37 chr1 26208142 26208442 -255985222 - AluJb SINE Alu -4 308 1 3029 130 35 58 chr1 26208442 26208716 -255984948 + MER49 LTR ERV1 339 595 -328 1052 179 0 0 chr1 26208727 26208889 -255984775 - FAM SINE Alu -23 162 1 1742 141 6 35 chr1 26208890 26209002 -255984662 + MER49 LTR ERV1 600 714 -209 2313 102 0 3 chr1 26209002 26209296 -255984368 - AluSq SINE Alu -20 293 1 1742 141 6 35 chr1 26209296 26209496 -255984168 + MER49 LTR ERV1 714 903 -20 2274 111 3 0 chr1 26209498 26209796 -255983868 + AluSx SINE Alu 1 299 -13 927 124 0 0 chr1 26209796 26209925 -255983739 + AluSq SINE Alu 137 265 -48 2048 156 3 0 chr1 26210218 26210519 -255983145 - AluJb SINE Alu -10 302 1 583 167 0 0 chr1 26210583 26210667 -255982997 - AluS SINE Alu -227 85 2 230 298 169 8 chr1 26210752 26210876 -255982788 + L2 LINE L2 3123 3266 -6 2278 105 44 22 chr1 26210890 26211253 -255982411 + THE1C LTR MaLR 1 371 -4 183 223 131 85 chr1 26211492 26211519 -255982145 + MIR3 SINE MIR 70 94 -114 447 239 37 18 chr1 26211519 26211628 -255982036 - MER81 DNA DNA 0 114 4 183 223 131 85 chr1 26211628 26211730 -255981934 + MIR3 SINE MIR 94 205 -3 430 156 16 0 chr1 26411800 26411864 -255781800 - AluS SINE Alu -247 66 2 1983 156 3 3 chr1 26411890 26412198 -255781466 + AluSx SINE Alu 1 308 -4 452 321 67 12 chr1 26412353 26412518 -255781146 + MIR SINE MIR 67 240 -22 2572 134 38 17 chr1 26412940 26413359 -255780305 - MSTA LTR MaLR 0 428 1 251 258 65 11 chr1 26413377 26413470 -255780194 + L1ME4a LINE L1 5978 6075 -46 465 199 93 43 chr1 26413687 26413746 -255779918 - Charlie1b DNA MER1_type -2238 523 468 2075 167 0 0 chr1 26413746 26414057 -255779607 + AluJb SINE Alu 1 311 -1 465 199 93 43 chr1 26414057 26414158 -255779506 - Charlie1b DNA MER1_type -2293 468 355 978 186 9 62 chr1 26414173 26414399 -255779265 + MER20 DNA MER1_type 2 215 -4 * 1390 188 35 102 chr1 26414396 26414561 -255779103 - Charlie1b DNA MER1_type -2386 375 200 2045 139 0 13 chr1 26414561 26414871 -255778793 - AluSx SINE Alu 0 312 7 1390 188 35 102 chr1 26414871 26415105 -255778559 - Charlie1b DNA MER1_type -2561 200 3 558 293 82 22 chr1 26415424 26415656 -255778008 - MIR SINE MIR -12 250 5 312 252 78 158 chr1 26415693 26416015 -255777649 - L2 LINE L2 -3 3269 2974 648 204 6 93 chr1 26416663 26416825 -255776839 - MIR SINE MIR -103 159 12 1422 107 0 5 chr1 26417213 26417400 -255776264 - AluSq SINE Alu -15 298 113 535 149 0 0 chr1 26417500 26417587 -255776077 - AluS SINE Alu -226 87 1 1824 132 61 20 chr1 26417874 26418169 -255775495 + AluSc SINE Alu 1 307 -2 28 29 0 0 chr1 26418337 26418372 -255775292 + AT_rich Low_complexity Low_complexity 1 35 0 233 254 0 0 chr1 26418744 26418815 -255774849 - L1MC4 LINE L1 0 8042 7972 2111 128 3 0 chr1 26419068 26419356 -255774308 - AluJo SINE Alu -14 298 10 273 305 28 38 chr1 26419608 26419821 -255773843 - L1MC/D LINE L1 -1923 5885 5675 2809 101 3 3 chr1 26419844 26420219 -255773445 - THE1C LTR MaLR 0 375 1 645 313 34 23 chr1 26420219 26420395 -255773269 - MER91A DNA MER1_type -15 181 4 2446 83 7 0 chr1 26420478 26420778 -255772886 - AluSx SINE Alu -10 302 1 309 194 42 0 chr1 26420935 26421007 -255772657 - L1MA10 LINE L1 0 6334 6260 801 166 33 13 chr1 26421109 26421300 -255772364 + AluJb SINE Alu 159 352 0 183 80 0 0 chr1 26421325 26421350 -255772314 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 1002 100 24 0 chr1 26421353 26421523 -255772141 + (GAAA)n Simple_repeat Simple_repeat 1 174 0 284 252 194 0 chr1 26421716 26421855 -255771809 - MIR SINE MIR -93 169 4 796 170 44 33 chr1 26421862 26422044 -255771620 + MER20 DNA MER1_type 2 185 -34 537 271 71 51 chr1 26422055 26422310 -255771354 - L2 LINE L2 -25 3288 3029 2303 79 0 0 chr1 26422312 26422590 -255771074 + AluSx SINE Alu 21 298 -14 592 227 46 46 chr1 26423434 26423628 -255770036 - MIR SINE MIR -13 249 56 1254 263 137 37 chr1 26424128 26424425 -255769239 + L2 LINE L2 2216 2482 -831 2248 104 7 0 chr1 26424425 26424722 -255768942 - AluSq SINE Alu -14 299 1 1254 263 137 37 chr1 26424722 26425412 -255768252 + L2 LINE L2 2482 3313 0 431 290 57 45 chr1 26425682 26425858 -255767806 + MIR SINE MIR 14 191 -71 541 333 88 37 chr1 26425919 26426567 -255767097 - L2 LINE L2 -15 3257 2576 438 283 111 38 chr1 26426604 26426919 -255766745 + L1ME4a LINE L1 5562 5899 -222 2298 96 0 0 chr1 26426994 26427298 -255766366 + AluSx SINE Alu 1 304 0 203 191 0 24 chr1 26427632 26427674 -255765990 + MIR SINE MIR 113 153 -55 1684 192 0 31 chr1 26427834 26428009 -255765655 - AluJo SINE Alu -4 308 146 1743 142 43 18 chr1 26428009 26428291 -255765373 - AluSx SINE Alu -23 289 1 1684 192 0 31 chr1 26428291 26428433 -255765231 - AluJo SINE Alu -166 146 1 691 248 7 13 chr1 26428433 26428586 -255765078 - MIR SINE MIR -99 163 12 281 223 146 82 chr1 26428611 26428817 -255764847 + MER112 DNA MER1_type 30 248 -12 396 333 89 14 chr1 26429087 26429300 -255764364 - MIR SINE MIR -5 257 29 276 130 0 0 chr1 26430418 26430464 -255763200 + (CA)n Simple_repeat Simple_repeat 2 47 0 301 261 92 59 chr1 26430587 26430740 -255762924 + MER103 DNA DNA 1 158 -8 2269 107 3 0 chr1 26430746 26431044 -255762620 - AluSp SINE Alu -12 301 3 180 0 0 0 chr1 26431046 26431066 -255762598 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 519 316 45 28 chr1 26431719 26431948 -255761716 + MIR SINE MIR 19 250 -12 2051 139 3 7 chr1 26432011 26432320 -255761344 - AluSx SINE Alu -4 308 1 1856 129 7 42 chr1 26432757 26432902 -255760762 + AluJo SINE Alu 1 131 -181 2363 103 0 3 chr1 26432902 26433203 -255760461 + AluSg SINE Alu 1 300 -10 1856 129 7 42 chr1 26433203 26433366 -255760298 + AluJo SINE Alu 131 298 -14 21 36 0 0 chr1 26433366 26433394 -255760270 + AT_rich Low_complexity Low_complexity 1 28 0 3053 216 80 85 chr1 26433579 26434885 -255758779 - MLT1B-int LTR MaLR -72 1299 1 2007 151 53 21 chr1 26434885 26435263 -255758401 - MLT1B LTR MaLR 0 390 1 525 77 26 0 chr1 26435264 26435342 -255758322 - L1ME LINE L1 -440 5724 5645 1392 143 28 9 chr1 26435345 26435562 -255758102 + AluJo SINE Alu 71 291 -21 309 151 0 0 chr1 26435571 26435624 -255758040 + GA-rich Low_complexity Low_complexity 1 53 0 1515 199 85 2 chr1 26435636 26436057 -255757607 - L1ME LINE L1 -521 5643 5190 2017 157 3 6 chr1 26436571 26436884 -255756780 + AluJb SINE Alu 1 312 0 338 176 167 0 chr1 26437153 26437255 -255756409 - MIR SINE MIR -12 250 132 674 176 115 7 chr1 26437285 26437433 -255756231 - MER20 DNA MER1_type -49 170 7 496 222 19 0 chr1 26437434 26437542 -255756122 - MIR SINE MIR -121 141 32 1890 135 31 7 chr1 26438462 26438750 -255754914 - AluJo SINE Alu -17 295 1 1439 219 50 88 chr1 26439194 26439773 -255753891 - L1MC5 LINE L1 -785 7176 6620 2247 109 0 3 chr1 26439802 26440095 -255753569 - AluSx SINE Alu -20 292 1 1467 271 34 0 chr1 26440112 26440521 -255753143 - MLT1-int LTR MaLR -771 600 178 241 111 44 0 chr1 26440581 26440626 -255753038 + MLT1E2 LTR MaLR 272 318 -308 251 254 17 0 chr1 26440644 26440703 -255752961 + L2 LINE L2 3002 3061 -211 282 87 0 0 chr1 26441209 26441255 -255752409 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 210 127 32 32 chr1 26441429 26441492 -255752172 + CT-rich Low_complexity Low_complexity 1 63 0 1714 150 0 92 chr1 26441583 26441909 -255751755 - AluJo SINE Alu -16 296 1 2095 244 18 8 chr1 26441909 26442412 -255751252 + MLT2B3 LTR ERVL 1 508 -46 2175 94 25 3 chr1 26442421 26442707 -255750957 - AluSg SINE Alu -18 292 1 347 284 91 91 chr1 26442717 26443039 -255750625 - L1MC5 LINE L1 -1879 5929 5605 2407 99 0 6 chr1 26443039 26443352 -255750312 - AluSx SINE Alu 0 312 2 347 284 91 91 chr1 26443352 26443543 -255750121 - L1MC5 LINE L1 -2202 5606 5416 185 245 102 0 chr1 26443906 26443955 -255749709 - L3 LINE CR1 -483 1094 1041 305 227 82 9 chr1 26444021 26444131 -255749533 - L1ME4a LINE L1 -12 6109 5992 1393 196 12 0 chr1 26444234 26444484 -255749180 - AluJo SINE Alu -21 291 39 1761 178 14 3 chr1 26444489 26444782 -255748882 - AluJb SINE Alu -16 296 1 24 0 0 0 chr1 26444782 26444806 -255748858 + AT_rich Low_complexity Low_complexity 1 24 0 229 250 0 0 chr1 26444806 26444854 -255748810 - L1ME4a LINE L1 -543 5578 5531 219 298 43 11 chr1 26445323 26445417 -255748247 + MIR SINE MIR 69 165 -97 306 73 0 0 chr1 26445426 26445467 -255748197 + (TG)n Simple_repeat Simple_repeat 2 42 0 1305 26 0 0 chr1 26445502 26445657 -255748007 + L1PA4 LINE L1 6001 6155 0 1063 227 99 37 chr1 26445684 26445716 -255747948 - L2 LINE L2 -626 2688 2659 2129 117 53 42 chr1 26445716 26446076 -255747588 + THE1B LTR MaLR 1 364 0 1063 227 99 37 chr1 26446076 26446418 -255747246 - L2 LINE L2 -655 2659 2291 1879 151 21 3 chr1 26446439 26446724 -255746940 + AluJb SINE Alu 1 290 -22 330 259 175 6 chr1 26446790 26446956 -255746708 - MER117 DNA MER1_type 0 197 4 2548 75 0 0 chr1 26447002 26447308 -255746356 + AluY SINE Alu 1 306 -5 614 293 80 9 chr1 26447309 26447521 -255746143 + MIR SINE MIR 25 251 -11 17533 126 16 94 chr1 26448675 26452400 -255741264 - L1P LINE L1 -2703 3443 12 654 278 217 34 chr1 26452503 26453001 -255740663 + L2 LINE L2 2446 2851 -462 2064 135 7 0 chr1 26453001 26453304 -255740360 - AluSq SINE Alu -3 310 6 654 278 217 34 chr1 26453304 26453532 -255740132 + L2 LINE L2 2851 3313 0 209 196 33 22 chr1 26453691 26453783 -255739881 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 1122 222 4 47 chr1 26454325 26454582 -255739082 - MIR SINE MIR -15 247 2 410 249 77 72 chr1 26454758 26454939 -255738725 + MIR SINE MIR 7 188 -74 408 223 115 15 chr1 26455045 26455175 -255738489 + MIR SINE MIR 120 262 0 1882 148 30 10 chr1 26455225 26455523 -255738141 + AluJo SINE Alu 1 304 -8 319 194 32 0 chr1 26455574 26455636 -255738028 + MIR SINE MIR 93 156 -106 2327 118 0 6 chr1 26456359 26456673 -255736991 + AluSx SINE Alu 1 312 0 320 226 0 71 chr1 26456774 26456858 -255736806 - MIR SINE MIR -109 153 76 567 271 58 50 chr1 26456933 26456968 -255736696 - MIR SINE MIR -2 260 227 577 51 25 13 chr1 26456968 26457047 -255736617 + MADE1 DNA Mariner 1 80 0 567 271 58 50 chr1 26457047 26457231 -255736433 - MIR SINE MIR -35 227 41 387 218 127 0 chr1 26457386 26457496 -255736168 - L1ME3A LINE L1 -188 5982 5859 2964 197 27 56 chr1 26457768 26458455 -255735209 - L1ME2 LINE L1 -10 6154 5489 1950 147 0 7 chr1 26458455 26458765 -255734899 - AluJb SINE Alu 0 308 1 2964 197 27 56 chr1 26458765 26458842 -255734822 - L1ME2 LINE L1 -675 5489 5411 555 250 150 39 chr1 26459017 26459197 -255734467 + MIR SINE MIR 6 205 -57 371 232 20 20 chr1 26459706 26459805 -255733859 + MIR SINE MIR 28 126 -136 183 286 143 41 chr1 26460599 26460697 -255732967 + L3 LINE CR1 1062 1169 -408 372 265 73 114 chr1 26461021 26461156 -255732508 + L2 LINE L2 2916 3055 -258 1785 177 17 3 chr1 26461156 26461455 -255732209 + AluJb SINE Alu 1 303 -9 372 265 73 114 chr1 26461455 26461715 -255731949 + L2 LINE L2 3055 3295 -18 193 107 0 0 chr1 26462415 26462443 -255731221 - L2 LINE L2 -32 3240 3213 619 276 31 85 chr1 26462455 26462692 -255730972 - L2 LINE L2 -13 3300 3080 1896 135 0 78 chr1 26462692 26463026 -255730638 - AluJb SINE Alu 0 312 5 619 276 31 85 chr1 26463026 26463081 -255730583 - L2 LINE L2 -233 3080 3024 407 331 20 7 chr1 26463080 26463231 -255730433 - MIR SINE MIR -62 200 48 * 449 317 48 29 chr1 26463846 26464054 -255729610 + L1MC4a LINE L1 5709 5920 -1888 1102 178 0 0 chr1 26464061 26464235 -255729429 - AluJb SINE Alu -6 306 133 225 0 0 0 chr1 26464235 26464260 -255729404 + (TG)n Simple_repeat Simple_repeat 2 26 0 954 225 74 22 chr1 26464264 26464535 -255729129 + AluJo SINE Alu 19 303 -9 21 36 0 0 chr1 26464672 26464700 -255728964 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 26464829 26464865 -255728799 + AT_rich Low_complexity Low_complexity 1 36 0 1012 152 91 0 chr1 26465013 26465178 -255728486 + AluJb SINE Alu 115 294 -18 186 43 0 0 chr1 26465187 26465210 -255728454 + (TATG)n Simple_repeat Simple_repeat 4 26 0 2719 211 53 31 chr1 26465268 26465605 -255728059 + MER82 DNA MER2_type 1 361 -292 1762 198 0 0 chr1 26465605 26465922 -255727742 - AluJo SINE Alu 0 317 1 2719 211 53 31 chr1 26465922 26466222 -255727442 + MER82 DNA MER2_type 361 653 0 428 284 29 0 chr1 26466327 26466429 -255727235 + MIR SINE MIR 157 261 -1 1543 184 57 18 chr1 26466431 26466713 -255726951 + AluJo SINE Alu 11 303 -9 213 279 96 48 chr1 26467088 26467192 -255726472 + L2 LINE L2 3160 3268 -4 1870 137 24 14 chr1 26467284 26467576 -255726088 + AluSx SINE Alu 1 295 -17 623 309 26 18 chr1 26467770 26468014 -255725650 - MIR SINE MIR 0 262 18 297 323 24 118 chr1 26468171 26468639 -255725025 + L2 LINE L2 2840 3263 -9 338 321 85 48 chr1 26468706 26469036 -255724628 + L2 LINE L2 2884 3225 -47 299 297 104 15 chr1 26469364 26469502 -255724162 + MIR SINE MIR 16 162 -60 2433 99 0 6 chr1 26469607 26469919 -255723745 + AluSg SINE Alu 1 310 0 340 118 0 0 chr1 26469998 26470049 -255723615 + MIR SINE MIR 110 160 -102 832 263 83 0 chr1 26470067 26470295 -255723369 + MIR SINE MIR 5 251 -11 350 250 33 22 chr1 26470302 26470394 -255723270 + MIR SINE MIR 153 245 -17 562 133 286 0 chr1 26471020 26471125 -255722539 - AluSq/x SINE Alu -176 136 2 1222 164 14 0 chr1 26471226 26471438 -255722226 - MER2 DNA MER2_type -1 344 130 15197 116 28 10 chr1 26471438 26472386 -255721278 - Tigger1 DNA MER2_type 0 2418 1489 2116 124 3 0 chr1 26472386 26472685 -255720979 + AluSg SINE Alu 1 300 -10 15197 116 28 10 chr1 26472685 26474088 -255719576 - Tigger1 DNA MER2_type -929 1489 24 642 133 150 0 chr1 26474097 26474210 -255719454 - MER2 DNA MER2_type -215 130 1 31 0 0 0 chr1 26474293 26474324 -255719340 + AT_rich Low_complexity Low_complexity 1 31 0 647 221 14 0 chr1 26474514 26474654 -255719010 - MLT1A2 LTR MaLR -51 323 182 238 105 0 140 chr1 26474658 26474715 -255718949 - MLT1A2 LTR MaLR -167 207 159 220 296 37 37 chr1 26474738 26474819 -255718845 + L2 LINE L2 3191 3271 -1 497 180 63 149 chr1 26474858 26475037 -255718627 - MIR SINE MIR -69 139 1 2392 71 26 16 chr1 26475720 26476028 -255717636 + AluSx SINE Alu 1 311 -1 221 217 385 0 chr1 26476182 26476265 -255717399 - MIR SINE MIR -74 188 74 296 241 19 28 chr1 26476537 26476645 -255717019 + GA-rich Low_complexity Low_complexity 1 107 0 411 92 0 15 chr1 26476700 26476765 -255716899 - MLT2B2 LTR ERVL 0 515 452 461 71 83 0 chr1 26476768 26476852 -255716812 + AluY SINE Alu 1 91 -220 331 111 16 32 chr1 26476952 26477015 -255716649 - L1M4 LINE L1 -406 5778 5717 266 136 141 153 chr1 26477020 26477149 -255716515 + Charlie5 DNA MER1_type 2352 2480 -144 2511 78 3 0 chr1 26477149 26477455 -255716209 - AluSp SINE Alu -6 307 1 266 136 141 153 chr1 26477455 26477502 -255716162 + Charlie5 DNA MER1_type 2480 2526 -98 637 287 25 4 chr1 26477909 26478093 -255715571 + MIR3 SINE MIR 18 201 -7 492 239 148 14 chr1 26478105 26478247 -255715417 + MIR SINE MIR 36 196 -66 341 268 43 11 chr1 26478253 26478419 -255715245 - MIR SINE MIR -8 254 8 259 343 101 1 chr1 26478483 26478637 -255715027 - MIR3 SINE MIR -40 168 28 293 331 15 31 chr1 26478905 26479035 -255714629 - L2 LINE L2 -8 3264 3137 1017 273 21 10 chr1 26479052 26479377 -255714287 + L1ME LINE L1 5461 5772 -349 358 239 39 41 chr1 26479659 26479807 -255713857 - L1M2 LINE L1 -722 5442 5289 287 268 107 45 chr1 26479996 26480108 -255713556 + MIR SINE MIR 14 132 -130 2027 203 73 29 chr1 26480266 26480639 -255713025 + MLT1D LTR MaLR 5 405 -100 1719 208 13 0 chr1 26480639 26480947 -255712717 - AluJo SINE Alu 0 312 1 2027 203 73 29 chr1 26480947 26481051 -255712613 + MLT1D LTR MaLR 405 503 -2 500 330 64 14 chr1 26481136 26481354 -255712310 - MIR SINE MIR -14 248 20 875 294 78 35 chr1 26481779 26482299 -255711365 + L1ME LINE L1 5275 5824 -297 1345 155 34 75 chr1 26482395 26482517 -255711147 - L1MB2 LINE L1 0 6171 6046 2427 71 0 10 chr1 26482517 26482825 -255710839 - AluSg SINE Alu -5 305 1 1345 155 34 75 chr1 26482825 26483024 -255710640 - L1MB2 LINE L1 -125 6046 5863 1909 58 58 0 chr1 26483476 26483718 -255709946 - AluY SINE Alu 0 311 56 335 210 0 0 chr1 26484486 26484556 -255709108 + MIR SINE MIR 41 109 -105 621 283 61 20 chr1 26484632 26484830 -255708834 - MIR SINE MIR -55 207 2 532 274 139 10 chr1 26485490 26485698 -255707966 + MIR SINE MIR 7 241 -21 197 175 25 25 chr1 26485687 26485727 -255707937 + L2 LINE L2 3216 3255 -17 * 210 254 55 0 chr1 26485895 26485950 -255707714 - MIR SINE MIR -168 94 37 211 317 73 0 chr1 26486136 26486218 -255707446 - MIR SINE MIR -169 93 6 424 321 48 31 chr1 26486907 26487368 -255706296 - MLT1L LTR MaLR -3 611 123 233 189 113 0 chr1 26487337 26487390 -255706274 - MLT1L LTR MaLR -414 201 143 * 662 209 30 0 chr1 26487465 26487599 -255706065 + MLT1J2 LTR MaLR 18 155 -295 405 288 9 0 chr1 26487629 26487740 -255705924 - MER58C DNA MER1_type 0 215 104 429 246 23 8 chr1 26487760 26487890 -255705774 - MER58C DNA MER1_type -83 132 1 334 263 59 25 chr1 26487925 26488043 -255705621 + MLT1J2 LTR MaLR 265 386 -64 1906 124 59 12 chr1 26488050 26488389 -255705275 - L1MB3 LINE L1 -1 6182 5828 1861 124 4 11 chr1 26488389 26488663 -255705001 - AluSq SINE Alu 0 313 42 2366 88 0 3 chr1 26488663 26488959 -255704705 - AluSx SINE Alu -17 295 1 1628 195 127 22 chr1 26488987 26489403 -255704261 - LTR64 LTR ERVK -96 462 3 231 277 62 27 chr1 26489404 26489516 -255704148 + MIR SINE MIR 14 129 -133 289 307 45 0 chr1 26490580 26490668 -255702996 + MIR SINE MIR 1 92 -170 351 306 104 35 chr1 26491409 26491553 -255702111 + L2 LINE L2 3119 3272 0 219 260 110 14 chr1 26491958 26492031 -255701633 + MIR SINE MIR 111 190 -72 586 320 46 58 chr1 26492181 26492612 -255701052 + L2 LINE L2 2868 3293 -20 352 304 0 0 chr1 26492718 26492797 -255700867 + MIR SINE MIR 1 79 -183 413 294 57 8 chr1 26492797 26492936 -255700728 - MIR SINE MIR -48 160 15 1129 201 13 66 chr1 26492979 26493297 -255700367 + L1MD2 LINE L1 6052 6352 -7 763 254 6 0 chr1 26493543 26493712 -255699952 - MER63A DNA MER1_type 0 210 41 237 283 54 22 chr1 26494055 26494147 -255699517 + MIR3 SINE MIR 82 176 -32 328 238 48 12 chr1 26494213 26494297 -255699367 + MIR SINE MIR 108 194 -68 2061 151 3 0 chr1 26494639 26494937 -255698727 + AluJb SINE Alu 1 299 -13 321 91 0 0 chr1 26495144 26495188 -255698476 - AluSq SINE Alu -257 44 1 1850 124 87 0 chr1 26495189 26495464 -255698200 - AluSx SINE Alu -13 299 1 1173 128 31 0 chr1 26495464 26495659 -255698005 - L1MB3 LINE L1 -354 5829 5629 225 224 0 0 chr1 26495662 26495720 -255697944 + MLT1J1 LTR MaLR 374 431 -15 551 283 6 57 chr1 26495764 26495941 -255697723 - MIR SINE MIR -14 248 81 494 267 51 97 chr1 26495943 26496254 -255697410 - L2 LINE L2 -94 3178 2882 201 243 68 68 chr1 26496240 26496314 -255697350 - MIR SINE MIR -187 75 2 * 211 234 43 0 chr1 26496359 26496406 -255697258 + MIR3 SINE MIR 159 207 -1 2325 102 0 3 chr1 26496716 26497011 -255696653 + AluSx SINE Alu 1 294 -18 1760 144 11 39 chr1 26497297 26497581 -255696083 + AluSx SINE Alu 2 277 -35 787 139 16 8 chr1 26497685 26497807 -255695857 - AluSq/x SINE Alu -188 124 2 767 246 105 13 chr1 26498318 26498546 -255695118 - MIR SINE MIR -7 255 7 622 223 0 105 chr1 26498711 26498874 -255694790 + MER63A DNA MER1_type 5 139 -1549 933 265 0 58 chr1 26498874 26499187 -255694477 + AluY SINE Alu 1 295 -6 622 223 0 105 chr1 26499187 26499252 -255694412 + MER63A DNA MER1_type 139 209 -1 199 279 88 83 chr1 26499464 26499668 -255693996 + L2 LINE L2 2852 3056 -216 632 167 18 0 chr1 26499698 26499812 -255693852 - MSTD LTR MaLR 0 396 281 651 261 4 50 chr1 26500053 26500313 -255693351 + AluSx SINE Alu 42 289 -23 198 0 0 0 chr1 26500313 26500335 -255693329 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 458 246 7 36 chr1 26500402 26500540 -255693124 - MER117 DNA MER1_type -38 159 26 706 220 225 14 chr1 26500544 26500959 -255692705 - MLT1H1 LTR MaLR -24 531 8 633 286 71 50 chr1 26501315 26501696 -255691968 - L2 LINE L2 -2 3311 2923 681 162 0 8 chr1 26501705 26501822 -255691842 - AluJ SINE Alu -11 301 186 943 71 0 0 chr1 26501828 26501940 -255691724 - AluJ SINE Alu -180 132 21 242 253 67 0 chr1 26502045 26502120 -255691544 - L2 LINE L2 -595 2719 2640 1188 168 0 0 chr1 26502258 26502431 -255691233 + AluJo SINE Alu 7 179 -133 270 81 0 0 chr1 26502535 26502572 -255691092 + (GA)n Simple_repeat Simple_repeat 1 37 0 189 243 14 68 chr1 26502775 26502849 -255690815 - L2 LINE L2 -817 2497 2428 444 250 61 71 chr1 26503136 26503332 -255690332 - MLT1K LTR MaLR -339 249 56 716 313 63 14 chr1 26503370 26503654 -255690010 - L3 LINE CR1 -25 1552 1255 208 311 0 27 chr1 26503711 26503785 -255689879 + MIR SINE MIR 23 94 -114 509 301 26 7 chr1 26503789 26503942 -255689722 - MIR SINE MIR -97 165 10 334 213 0 0 chr1 26503934 26503995 -255689669 + MIR SINE MIR 79 139 -69 * 763 209 5 78 chr1 26504001 26504024 -255689640 - MER5A DNA MER1_type -12 177 154 1744 126 4 4 chr1 26504024 26504271 -255689393 - AluJb SINE Alu -53 259 13 763 209 5 78 chr1 26504271 26504438 -255689226 - MER5A DNA MER1_type -35 154 1 2028 105 54 17 chr1 26504524 26504818 -255688846 - AluSx SINE Alu -7 305 1 276 30 0 0 chr1 26504845 26504878 -255688786 + (TG)n Simple_repeat Simple_repeat 1 33 0 228 35 0 0 chr1 26504877 26504906 -255688758 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1957 144 37 42 chr1 26505002 26505383 -255688281 - Tigger2a DNA MER2_type -51 383 5 871 176 57 10 chr1 26505386 26505579 -255688085 + L1MB7 LINE L1 5964 6165 -19 187 189 0 27 chr1 26505614 26505651 -255688013 - MIR SINE MIR -189 73 38 1015 154 0 12 chr1 26506204 26506366 -255687298 + AluJo SINE Alu 13 172 -140 434 259 244 0 chr1 26506564 26506761 -255686903 - MIR SINE MIR -6 256 12 276 271 47 19 chr1 26506808 26506915 -255686749 + MIR SINE MIR 38 147 -61 2366 78 3 3 chr1 26508661 26508956 -255684708 + AluSg SINE Alu 1 295 -15 2277 97 3 3 chr1 26509333 26509632 -255684032 + AluSx SINE Alu 1 299 -13 558 292 74 25 chr1 26511030 26511232 -255682432 - MIR SINE MIR -4 258 47 291 114 0 0 chr1 26511713 26511757 -255681907 + (TA)n Simple_repeat Simple_repeat 2 45 0 250 296 133 0 chr1 26511757 26511855 -255681809 + MIR SINE MIR 152 262 0 1134 176 73 11 chr1 26512102 26512363 -255681301 - L1ME2 LINE L1 -19 6145 5869 623 168 75 0 chr1 26512937 26513044 -255680620 - FLAM_C SINE Alu -27 116 2 435 243 88 14 chr1 26513387 26513535 -255680129 + MER103 DNA DNA 6 164 -2 306 207 156 43 chr1 26514254 26514375 -255679289 + MIR SINE MIR 10 121 -87 698 269 16 16 chr1 26515197 26515383 -255678281 - MIR3 SINE MIR -7 201 16 832 204 98 27 chr1 26515399 26515624 -255678040 - MIR SINE MIR -10 252 12 766 276 74 21 chr1 26516287 26516532 -255677132 - MIR SINE MIR -1 261 5 476 313 163 13 chr1 26516838 26517065 -255676599 + MIR SINE MIR 2 262 0 186 43 0 0 chr1 26517661 26517684 -255675980 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 437 295 133 0 chr1 26518426 26518599 -255675065 + MIR SINE MIR 35 230 -32 521 302 79 8 chr1 26518719 26519015 -255674649 - L1ME2 LINE L1 -337 5784 5445 2705 49 3 0 chr1 26519276 26519581 -255674083 + AluSp SINE Alu 1 306 -7 195 331 60 60 chr1 26519826 26519959 -255673705 + MIR SINE MIR 109 241 -21 217 150 0 0 chr1 26520353 26520393 -255673271 - L2 LINE L2 -1 3312 3273 443 265 75 45 chr1 26520601 26520765 -255672899 + MIR SINE MIR 30 203 -59 428 106 12 0 chr1 26520765 26520850 -255672814 + (TA)n Simple_repeat Simple_repeat 1 86 0 443 265 75 45 chr1 26520850 26520885 -255672779 + MIR SINE MIR 203 235 -27 242 228 63 25 chr1 26520914 26520993 -255672671 - MIR SINE MIR -64 144 63 209 276 69 0 chr1 26521606 26521664 -255672000 - MER91B DNA MER1_type -128 62 1 2041 103 4 0 chr1 26522123 26522385 -255671279 - AluSq SINE Alu -50 263 1 222 304 109 0 chr1 26522391 26522483 -255671181 + MIR SINE MIR 86 187 -75 701 219 79 14 chr1 26522503 26522713 -255670951 - MIR SINE MIR -8 254 33 678 326 25 17 chr1 26523572 26523808 -255669856 + MIR SINE MIR 13 250 -12 508 272 105 62 chr1 26523788 26524045 -255669619 - L2 LINE L2 -22 3291 3024 * 344 336 26 9 chr1 26524748 26524864 -255668800 + L2 LINE L2 3188 3305 -8 346 193 53 44 chr1 26524895 26525009 -255668655 + MIR SINE MIR 27 141 -121 557 313 71 21 chr1 26526754 26526994 -255666670 + MIR SINE MIR 5 256 -6 566 207 152 0 chr1 26527523 26527668 -255665996 + MIR SINE MIR 19 185 -77 252 304 0 0 chr1 26528284 26528378 -255665286 + MIR SINE MIR 44 137 -71 26 0 0 0 chr1 26529308 26529334 -255664330 + GC_rich Low_complexity Low_complexity 1 26 0 353 324 57 23 chr1 26529504 26529680 -255663984 - MIR SINE MIR 0 262 81 319 296 21 35 chr1 26529754 26529896 -255663768 + L1ME4a LINE L1 5966 6105 -16 812 166 118 0 chr1 26529950 26529978 -255663686 + MER5A DNA MER1_type 1 24 -165 180 0 0 0 chr1 26529978 26529998 -255663666 + (CAT)n Simple_repeat Simple_repeat 1 20 0 812 166 118 0 chr1 26529998 26530138 -255663526 + MER5A DNA MER1_type 24 189 0 416 269 67 8 chr1 26530247 26530381 -255663283 + MIR SINE MIR 47 188 -74 249 262 136 19 chr1 26530667 26530770 -255662894 + L2 LINE L2 3195 3309 -4 250 224 71 12 chr1 26531205 26531290 -255662374 - MIR SINE MIR 0 262 173 560 283 56 28 chr1 26531378 26531558 -255662106 - MIR SINE MIR -76 186 2 371 277 43 77 chr1 26532648 26532883 -255660781 + MIR SINE MIR 28 254 -8 350 330 0 0 chr1 26533058 26533161 -255660503 + CT-rich Low_complexity Low_complexity 3 105 0 443 221 133 33 chr1 26533216 26533397 -255660267 + L2 LINE L2 3113 3311 -2 289 213 199 22 chr1 26533521 26533657 -255660007 + MIR SINE MIR 38 197 -65 253 384 9 0 chr1 26533812 26533924 -255659740 - MIR SINE MIR -1 261 149 * 532 246 73 85 chr1 26533914 26534174 -255659490 + L2 LINE L2 3057 3313 0 254 238 127 0 chr1 26534152 26534215 -255659449 - MIR SINE MIR -118 144 74 * 636 323 30 4 chr1 26534906 26535138 -255658526 + MIR SINE MIR 7 244 -18 228 259 0 0 chr1 26535349 26535407 -255658257 + MIR SINE MIR 37 94 -114 292 328 53 0 chr1 26535461 26535592 -255658072 - MIR SINE MIR 0 262 125 295 343 22 8 chr1 26536250 26536384 -255657280 + MIR SINE MIR 48 183 -79 758 127 24 160 chr1 26536658 26536812 -255656852 + MER5A DNA MER1_type 1 120 -69 1076 187 0 0 chr1 26536812 26537026 -255656638 - L1MA6 LINE L1 -9 6291 6078 758 127 24 160 chr1 26537026 26537084 -255656580 + MER5A DNA MER1_type 120 184 -5 735 235 59 15 chr1 26537114 26537318 -255656346 + MIR SINE MIR 50 262 0 198 200 0 22 chr1 26537396 26537441 -255656223 + L2 LINE L2 3014 3057 -215 404 148 115 25 chr1 26538426 26538548 -255655116 + L2 LINE L2 2906 3038 -234 430 344 0 0 chr1 26539189 26539352 -255654312 - MER117 DNA MER1_type -34 163 1 637 283 132 0 chr1 26540261 26540473 -255653191 - MIR SINE MIR -11 251 12 462 263 75 0 chr1 26540482 26540615 -255653049 + MIR SINE MIR 106 248 -14 460 286 54 22 chr1 26540631 26540816 -255652848 - MIR SINE MIR -64 198 8 2330 84 59 11 chr1 26540913 26541271 -255652393 - THE1C LTR MaLR 0 375 1 787 214 167 0 chr1 26541499 26541733 -255651931 - ORSL DNA AcHobo 0 275 3 489 17 0 0 chr1 26541742 26541800 -255651864 + (CA)n Simple_repeat Simple_repeat 2 59 0 1397 206 0 18 chr1 26542203 26542485 -255651179 + AluSx SINE Alu 23 299 -13 1418 254 44 106 chr1 26542668 26543350 -255650314 + MLT1E2-int LTR MaLR 692 1331 -40 2239 80 4 0 chr1 26543393 26543668 -255649996 + AluSp SINE Alu 29 304 -9 388 209 82 73 chr1 26543706 26543816 -255649848 + MLT1E2 LTR MaLR 3 113 -513 579 260 61 6 chr1 26543816 26543997 -255649667 + MSTD LTR MaLR 1 191 -205 1834 148 54 3 chr1 26543998 26544295 -255649369 + AluSx SINE Alu 1 312 0 272 104 42 0 chr1 26544304 26544352 -255649312 + GA-rich Low_complexity Low_complexity 4 53 0 1253 50 11 11 chr1 26544352 26544532 -255649132 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1134 153 5 11 chr1 26544660 26544850 -255648814 + MSTD LTR MaLR 208 396 0 * 1507 214 49 49 chr1 26544850 26545321 -255648343 + MLT1E2 LTR MaLR 109 624 0 352 355 26 19 chr1 26545402 26545557 -255648107 + MIR SINE MIR 86 241 -21 230 223 140 76 chr1 26545981 26546138 -255647526 - L1ME4a LINE L1 -18 6103 5937 850 228 14 38 chr1 26546139 26546305 -255647359 - MER58A DNA MER1_type -2196 224 63 1907 157 17 10 chr1 26546305 26546605 -255647059 + AluJb SINE Alu 1 302 -10 850 228 14 38 chr1 26546605 26546649 -255647015 - MER58A DNA MER1_type -2357 63 19 1047 236 75 13 chr1 26546783 26547088 -255646576 - MER33 DNA MER1_type 0 324 1 1365 165 13 25 chr1 26547331 26547567 -255646097 + AluJo SINE Alu 48 280 -32 404 277 215 11 chr1 26547729 26547906 -255645758 + MIR SINE MIR 7 219 -43 1100 249 138 2 chr1 26548771 26549200 -255644464 + LTR16C LTR ERVL 5 491 0 448 250 18 9 chr1 26550596 26550708 -255642956 + MIR SINE MIR 26 138 -70 222 310 14 0 chr1 26551692 26551763 -255641901 - MIR SINE MIR -56 152 81 209 105 0 26 chr1 26551916 26551954 -255641710 + (CA)n Simple_repeat Simple_repeat 1 37 0 2610 58 0 7 chr1 26552218 26552526 -255641138 - AluSq SINE Alu -7 306 1 244 172 11 20 chr1 26553231 26553300 -255640364 - MER91 DNA MER1_type 0 140 1 301 239 15 0 chr1 26553770 26553837 -255639827 - MIR SINE MIR -76 132 65 268 217 72 14 chr1 26554836 26554927 -255638737 + MIR SINE MIR 53 145 -63 635 226 84 32 chr1 26555037 26555227 -255638437 + MIR SINE MIR 6 205 -57 230 307 13 0 chr1 26555246 26555321 -255638343 + (CTA)n Simple_repeat Simple_repeat 2 77 0 2418 79 0 13 chr1 26555558 26555862 -255637802 - AluY SINE Alu -11 300 1 583 274 73 27 chr1 26556176 26556395 -255637269 + MIR SINE MIR 2 230 -32 194 239 326 0 chr1 26556415 26556507 -255637157 - MIR3 SINE MIR -51 157 36 433 294 21 42 chr1 26557560 26557703 -255635961 - MIR SINE MIR -67 195 56 462 309 73 0 chr1 26558127 26558292 -255635372 + MIR SINE MIR 11 187 -75 274 295 25 8 chr1 26558647 26558769 -255634895 + CT-rich Low_complexity Low_complexity 1 124 0 629 193 62 57 chr1 26559598 26559774 -255633890 + AluJb SINE Alu 135 311 -1 273 241 25 0 chr1 26561032 26561111 -255632553 + MIR SINE MIR 66 146 -62 329 290 89 25 chr1 26561271 26561445 -255632219 - MIR SINE MIR -62 146 3 628 221 82 45 chr1 26561499 26561743 -255631921 - MIR SINE MIR -11 251 4 321 343 30 15 chr1 26562458 26562592 -255631072 - MIR SINE MIR -75 187 52 567 268 47 34 chr1 26563512 26563758 -255629906 - MIR SINE MIR -5 257 14 465 277 51 75 chr1 26563826 26564079 -255629585 - L3 LINE CR1 -1 1576 1330 490 301 25 20 chr1 26564261 26564457 -255629207 - MIR SINE MIR -7 255 59 237 220 0 34 chr1 26564516 26564575 -255629089 + MIR SINE MIR 76 132 -130 439 328 0 0 chr1 26564782 26564904 -255628760 - MIR SINE MIR 0 262 141 399 234 131 29 chr1 26565118 26565293 -255628371 + L1ME4a LINE L1 5929 6121 0 500 256 106 6 chr1 26565753 26565913 -255627751 - MIR SINE MIR -1 261 86 384 259 184 13 chr1 26567091 26567249 -255626415 - MIR SINE MIR -12 250 66 207 246 53 0 chr1 26567948 26568005 -255625659 + MIR SINE MIR 191 250 -12 477 250 10 0 chr1 26568425 26568525 -255625139 + MIR SINE MIR 51 151 -111 239 325 67 25 chr1 26568545 26568665 -255624999 + L2 LINE L2 3145 3269 -3 288 220 23 28 chr1 26568679 26568856 -255624808 + (TGGG)n Simple_repeat Simple_repeat 3 178 0 185 294 59 0 chr1 26569520 26569588 -255624076 + MIR SINE MIR 158 229 -33 185 62 0 31 chr1 26570440 26570472 -255623192 + (TA)n Simple_repeat Simple_repeat 2 32 0 593 234 95 0 chr1 26571017 26571175 -255622489 - MER63A DNA MER1_type -10 200 28 2497 88 0 0 chr1 26571202 26571508 -255622156 - AluSg SINE Alu -4 306 1 2474 73 10 0 chr1 26571547 26571848 -255621816 - AluY SINE Alu -7 304 1 839 191 55 41 chr1 26572242 26572462 -255621202 + MER96B DNA MER1_type? 2 224 -193 734 186 36 12 chr1 26572708 26572875 -255620789 + MER5B DNA MER1_type 7 177 -1 207 114 0 0 chr1 26573411 26573446 -255620218 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 260 333 101 0 chr1 26574000 26574138 -255619526 - MIR3 SINE MIR -21 187 36 2134 128 10 13 chr1 26575472 26575777 -255617887 + AluSx SINE Alu 1 304 -8 370 240 39 62 chr1 26576519 26576648 -255617016 + MIR SINE MIR 120 245 -17 659 247 37 11 chr1 26576675 26576865 -255616799 + MER117 DNA MER1_type 1 195 -2 537 156 18 18 chr1 26577120 26577229 -255616435 + MIR3 SINE MIR 100 208 0 288 347 62 0 chr1 26577524 26577668 -255615996 - MIR3 SINE MIR -23 185 33 462 367 48 20 chr1 26577680 26577928 -255615736 + MIR SINE MIR 8 262 0 546 281 31 12 chr1 26578772 26578932 -255614732 + MIR SINE MIR 23 185 -77 212 188 0 0 chr1 26579094 26579154 -255614510 - L2 LINE L2 -296 2976 2917 212 261 31 15 chr1 26579579 26579644 -255614020 + MIR SINE MIR 8 73 -189 240 279 64 57 chr1 26581031 26581171 -255612493 - MIR SINE MIR -66 196 56 411 245 101 22 chr1 26582167 26582306 -255611358 + MER103 DNA DNA 17 166 0 2191 117 17 0 chr1 26582832 26583123 -255610541 - AluSx SINE Alu -16 296 1 366 292 175 7 chr1 26583148 26583302 -255610362 - MIR SINE MIR -70 192 13 2305 124 0 0 chr1 26584008 26584314 -255609350 - AluSx SINE Alu -6 306 1 522 229 83 47 chr1 26584316 26584508 -255609156 - MIR SINE MIR -59 203 5 246 310 171 19 chr1 26584662 26584820 -255608844 + MIR SINE MIR 78 259 -3 194 205 26 0 chr1 26584811 26584850 -255608814 - L2 LINE L2 -2 3270 3231 * 382 286 21 11 chr1 26585342 26585467 -255608197 - MIR SINE MIR -61 147 70 285 317 148 7 chr1 26585466 26585608 -255608056 + MIR SINE MIR 90 251 -11 * 1730 166 6 54 chr1 26585627 26585809 -255607855 - AluJo SINE Alu -14 298 136 2577 58 0 0 chr1 26585809 26586100 -255607564 - AluY SINE Alu -20 291 1 1730 166 6 54 chr1 26586100 26586230 -255607434 - AluJo SINE Alu -176 136 1 321 353 0 0 chr1 26586440 26586607 -255607057 + L1ME4a LINE L1 5694 5860 -261 2197 126 0 10 chr1 26586615 26586917 -255606747 + AluSx SINE Alu 1 299 -13 2340 94 0 0 chr1 26587205 26587521 -255606143 + AluSx SINE Alu 1 316 0 217 284 159 0 chr1 26587636 26587724 -255605940 + MIR SINE MIR 154 255 -7 457 267 53 8 chr1 26588342 26588473 -255605191 + MIR SINE MIR 13 149 -113 339 304 39 0 chr1 26589379 26589481 -255604183 + MIR3 SINE MIR 50 155 -53 2599 67 0 3 chr1 26589556 26589868 -255603796 - AluY SINE Alu 0 311 1 2065 146 0 3 chr1 26589932 26590233 -255603431 - AluJb SINE Alu -10 302 3 2295 121 0 0 chr1 26591333 26591630 -255602034 - AluSx SINE Alu -15 297 1 228 338 0 14 chr1 26591877 26591948 -255601716 - L2 LINE L2 0 3272 3203 558 322 48 45 chr1 26592167 26592288 -255601376 + L2 LINE L2 2597 2716 -598 2054 99 42 28 chr1 26592288 26592572 -255601092 + AluSg SINE Alu 1 288 -22 558 322 48 45 chr1 26592572 26592829 -255600835 + L2 LINE L2 2716 2976 -338 490 263 58 13 chr1 26593160 26593316 -255600348 + MIR SINE MIR 79 241 -21 180 0 0 0 chr1 26593319 26593339 -255600325 + (TCC)n Simple_repeat Simple_repeat 2 21 0 1174 201 33 15 chr1 26593388 26593661 -255600003 + MER33 DNA MER1_type 6 283 -41 2271 79 32 0 chr1 26593663 26593943 -255599721 + AluY SINE Alu 1 289 -22 21 36 0 0 chr1 26593986 26594014 -255599650 + AT_rich Low_complexity Low_complexity 1 28 0 713 294 55 8 chr1 26594269 26594507 -255599157 - MIR SINE MIR -12 250 2 206 188 0 21 chr1 26594644 26594692 -255598972 - MIR SINE MIR -111 151 105 354 228 236 16 chr1 26596327 26596454 -255597210 - MIR SINE MIR -74 188 34 192 276 113 0 chr1 26597747 26597851 -255595813 - MIR SINE MIR -75 133 34 1976 163 3 3 chr1 26598216 26598522 -255595142 - AluJo SINE Alu -6 306 1 258 347 91 15 chr1 26599360 26599559 -255594105 - MIR SINE MIR -40 222 9 346 319 59 0 chr1 26600095 26600230 -255593434 - MIR SINE MIR -74 188 46 * 370 268 188 15 chr1 26600221 26600403 -255593261 - MIR SINE MIR -45 217 7 508 194 328 0 chr1 26600842 26601028 -255592636 - MIR SINE MIR -13 249 3 326 269 221 0 chr1 26601069 26601214 -255592450 + MIR3 SINE MIR 29 205 -3 730 179 58 6 chr1 26601413 26601569 -255592095 - MER53 DNA DNA -23 166 3 392 276 78 0 chr1 26601783 26601899 -255591765 - MER63 DNA MER1_type -311 751 1 224 229 0 0 chr1 26602246 26602294 -255591370 + MIR SINE MIR 176 223 -39 219 69 0 0 chr1 26602306 26602335 -255591329 + (CACCAT)n Simple_repeat Simple_repeat 1 29 0 188 375 16 0 chr1 26602468 26602532 -255591132 - L2 LINE L2 -8 3264 3200 594 287 78 10 chr1 26602815 26603034 -255590630 + MIR SINE MIR 17 240 -22 269 317 83 14 chr1 26603432 26603577 -255590087 - MIR3 SINE MIR -6 202 48 400 279 57 0 chr1 26604153 26604275 -255589389 - MIR3 SINE MIR -21 187 59 215 224 0 0 chr1 26604781 26604830 -255588834 - L2 LINE L2 -3 3269 3221 476 230 137 12 chr1 26604833 26604994 -255588670 + MIR SINE MIR 82 262 0 325 349 76 0 chr1 26605230 26605402 -255588262 - MIR3 SINE MIR -3 205 21 2022 115 21 21 chr1 26605742 26606028 -255587636 - AluSx SINE Alu -26 286 1 1793 163 10 13 chr1 26606109 26606287 -255587377 - AluJo SINE Alu -12 300 122 198 0 0 0 chr1 26606287 26606309 -255587355 + (TTTTC)n Simple_repeat Simple_repeat 4 25 0 1793 163 10 13 chr1 26606309 26606431 -255587233 - AluJo SINE Alu -190 122 1 1962 171 37 17 chr1 26607692 26608102 -255585562 + LTR52 LTR ERVL 1 418 -3 388 316 47 18 chr1 26608316 26608487 -255585177 - MIR SINE MIR -84 178 3 5538 236 56 17 chr1 26609002 26610714 -255582950 + L1ME3A LINE L1 37 1822 -4574 2577 59 0 0 chr1 26610738 26611041 -255582623 - AluY SINE Alu -8 303 1 21 57 0 0 chr1 26611044 26611079 -255582585 + AT_rich Low_complexity Low_complexity 1 35 0 235 73 171 0 chr1 26611091 26611132 -255582532 + Alu SINE Alu 1 48 -255 1173 139 0 0 chr1 26611140 26611305 -255582359 + AluSg/x SINE Alu 129 293 -17 1060 176 10 10 chr1 26611311 26611510 -255582154 + L1ME3A LINE L1 1868 2066 -4330 238 111 83 0 chr1 26611513 26611549 -255582115 - MER58A DNA MER1_type -1 223 185 475 29 14 29 chr1 26611551 26611621 -255582043 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1019 138 13 13 chr1 26611633 26611785 -255581879 - FRAM SINE Alu -26 150 1 1007 226 0 0 chr1 26611785 26611971 -255581693 - MER58A DNA MER1_type -33 191 6 1898 237 53 6 chr1 26611976 26612675 -255580989 + L1ME3A LINE L1 2057 2740 -3475 991 253 51 22 chr1 26612649 26613005 -255580659 + L1ME3A LINE L1 3626 3991 -2224 * 2377 209 55 16 chr1 26612999 26613558 -255580106 - L1ME1 LINE L1 -253 5913 5333 * 3216 233 73 62 chr1 26613555 26614304 -255579360 + L1ME3A LINE L1 3970 4710 -1523 503 140 9 56 chr1 26614304 26614411 -255579253 + L1MA5 LINE L1 6199 6300 0 3216 233 73 62 chr1 26614411 26615179 -255578485 + L1ME3A LINE L1 4710 5510 -723 2429 186 63 49 chr1 26615183 26615851 -255577813 + L1ME3A LINE L1 5563 6239 0 1984 126 30 10 chr1 26616995 26617296 -255576368 - AluSq SINE Alu -6 307 1 984 217 155 10 chr1 26617301 26617616 -255576048 - L1MB8 LINE L1 0 6247 5885 629 132 270 6 chr1 26617611 26617770 -255575894 - L1MB8 LINE L1 -639 5594 5394 * 1735 147 56 0 chr1 26617800 26618085 -255575579 + AluJo SINE Alu 12 312 0 8408 209 60 28 chr1 26618116 26620313 -255573351 - L1MB8 LINE L1 -827 5388 3105 1989 91 4 4 chr1 26620313 26620566 -255573098 - AluSq SINE Alu -59 254 2 8408 209 60 28 chr1 26620566 26620795 -255572869 - L1MB8 LINE L1 -3110 3105 2885 4883 235 64 78 chr1 26620801 26622156 -255571508 - L1MB8 LINE L1 -3467 2748 1376 779 188 17 33 chr1 26622156 26622337 -255571327 - L1MB3 LINE L1 -2 6181 6004 4883 235 64 78 chr1 26622337 26622753 -255570911 - L1MB8 LINE L1 -4839 1376 956 2171 96 17 0 chr1 26622753 26623045 -255570619 - AluSg1 SINE Alu -12 297 1 4883 235 64 78 chr1 26623045 26624010 -255569654 - L1MB8 LINE L1 -5259 956 93 1810 161 29 0 chr1 26624395 26624675 -255568989 + AluJb SINE Alu 1 288 -24 4381 168 12 4 chr1 26624831 26625557 -255568107 + MER44D DNA MER2_type 1 604 -1 2179 100 0 4 chr1 26625638 26625948 -255567716 + AluSc SINE Alu 1 309 0 399 235 50 8 chr1 26626226 26626345 -255567319 + MIR SINE MIR 47 170 -92 604 247 134 26 chr1 26626444 26626675 -255566989 - MIR SINE MIR 0 262 7 1692 173 11 11 chr1 26626761 26627044 -255566620 - AluJo SINE Alu -24 288 6 343 300 7 21 chr1 26627201 26627341 -255566323 - L3 LINE CR1 -167 1410 1273 475 208 75 0 chr1 26627371 26627477 -255566187 - MER112 DNA MER1_type -146 114 1 490 199 91 34 chr1 26627660 26627836 -255565828 + L2 LINE L2 3014 3199 -114 766 156 8 0 chr1 26627887 26628009 -255565655 + FLAM_C SINE Alu 2 124 -19 180 0 0 0 chr1 26628066 26628086 -255565578 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 320 347 16 0 chr1 26628519 26628643 -255565021 - MIR3 SINE MIR -49 159 34 2357 77 0 7 chr1 26629357 26629655 -255564009 - AluSx SINE Alu -16 296 1 187 309 108 44 chr1 26629774 26629841 -255563823 + L2 LINE L2 2715 2776 -538 2123 94 30 3 chr1 26629841 26630139 -255563525 - AluJb SINE Alu -6 306 1 187 309 108 44 chr1 26630139 26630275 -255563389 + L2 LINE L2 2776 2931 -383 239 280 0 27 chr1 26633174 26633249 -255560415 + L2 LINE L2 3200 3272 0 438 290 36 0 chr1 26633344 26633482 -255560182 - MIR SINE MIR -52 210 68 1521 157 92 0 chr1 26633669 26633930 -255559734 + AluJo SINE Alu 12 296 -16 269 194 90 0 chr1 26634007 26634074 -255559590 - MIR SINE MIR -109 153 81 2187 108 20 0 chr1 26635117 26635412 -255558252 + AluSc SINE Alu 1 301 -8 1863 146 3 17 chr1 26635529 26635824 -255557840 + AluJo SINE Alu 1 291 -21 813 311 34 6 chr1 26635920 26636241 -255557423 - L1ME4a LINE L1 -191 5930 5601 1366 149 39 140 chr1 26636345 26636681 -255556983 + AluJb SINE Alu 1 302 0 414 295 8 8 chr1 26636704 26636833 -255556831 - MIR3 SINE MIR -23 185 57 331 330 0 0 chr1 26636866 26636972 -255556692 - MIR SINE MIR 0 262 157 317 246 119 24 chr1 26636976 26637102 -255556562 + MIR SINE MIR 123 260 -2 * 510 277 20 7 chr1 26637100 26637248 -255556416 - MIR SINE MIR -105 157 8 537 238 14 28 chr1 26637604 26637737 -255555927 + MIR3 SINE MIR 29 159 -49 225 314 0 0 chr1 26637737 26637807 -255555857 - MER5B DNA MER1_type -3 175 106 684 246 38 11 chr1 26638184 26638367 -255555297 - L1ME3A LINE L1 -7 6163 5976 1064 190 99 74 chr1 26638633 26638683 -255554981 - MER74B LTR ERVL -67 555 508 2029 51 47 8 chr1 26638683 26638940 -255554724 + AluY SINE Alu 16 282 -29 1064 190 99 74 chr1 26638940 26639334 -255554330 - MER74B LTR ERVL -114 508 2 261 296 130 12 chr1 26639543 26639705 -255553959 + MIR SINE MIR 47 227 -35 252 291 0 55 chr1 26639860 26639970 -255553694 - MLT1K LTR MaLR -4 584 481 1373 64 137 20 chr1 26640535 26640739 -255552925 - MER30 DNA MER1_type 0 230 3 227 254 45 15 chr1 26640852 26640919 -255552745 + MIR SINE MIR 5 73 -189 314 174 65 2 chr1 26640920 26641005 -255552659 - AluJ/FRAM SINE Alu -1 301 221 561 205 24 8 chr1 26641334 26641461 -255552203 - MIR SINE MIR -76 186 58 278 141 320 0 chr1 26641526 26641604 -255552060 - MER94 DNA DNA 0 134 32 1741 135 0 0 chr1 26641604 26641848 -255551816 - AluSx SINE Alu -12 300 57 3590 122 43 46 chr1 26643108 26643283 -255550381 + MER39B LTR ERV1 1 175 -478 1728 121 29 46 chr1 26643283 26643564 -255550100 + AluJb SINE Alu 11 286 -26 420 20 0 0 chr1 26643564 26643613 -255550051 + (GA)n Simple_repeat Simple_repeat 2 50 0 3590 122 43 46 chr1 26643613 26644091 -255549573 + MER39B LTR ERV1 173 653 0 334 167 0 0 chr1 26644383 26644437 -255549227 - MER116 DNA Mariner -1 79 26 1577 96 0 10 chr1 26644437 26644645 -255549019 + AluSx SINE Alu 1 206 -106 620 211 94 0 chr1 26644697 26644868 -255548796 - Charlie2a DNA MER1_type -169 2693 2507 * 1173 220 33 23 chr1 26644861 26645161 -255548503 - MER93b LTR ERV1 -59 314 12 2009 197 124 98 chr1 26645168 26645542 -255548122 - Charlie2a DNA MER1_type -400 2462 2099 2300 104 3 25 chr1 26645542 26645859 -255547805 - AluSq SINE Alu -3 310 1 2009 197 124 98 chr1 26645859 26646394 -255547270 - Charlie2a DNA MER1_type -763 2099 1529 725 264 92 21 chr1 26646393 26646677 -255546987 - Charlie2a DNA MER1_type -2388 474 171 * 186 259 19 0 chr1 26647176 26647230 -255546434 + L2 LINE L2 3008 3062 -251 2282 84 11 0 chr1 26647451 26647736 -255545928 - AluSp SINE Alu -25 288 1 205 254 32 0 chr1 26647813 26647876 -255545788 - MIR SINE MIR 0 262 198 1110 195 85 0 chr1 26647879 26648115 -255545549 + MIR SINE MIR 1 256 -6 279 150 0 0 chr1 26648297 26648337 -255545327 - MER103 DNA DNA -77 89 50 397 310 60 23 chr1 26648350 26648566 -255545098 - MIR SINE MIR -25 237 14 3064 198 31 38 chr1 26649091 26650646 -255543018 + L1ME4a LINE L1 2049 5293 -1089 751 232 26 55 chr1 26650664 26650936 -255542728 - L1MDa LINE L1 -4071 2471 2208 359 183 49 0 chr1 26650932 26651014 -255542650 + L1ME4a LINE L1 5330 5415 -967 * 263 261 270 0 chr1 26651012 26651127 -255542537 - L1MDa LINE L1 -5919 621 476 * 2117 143 28 25 chr1 26651127 26651483 -255542181 - MLT1A1 LTR MaLR 0 365 9 1727 167 20 68 chr1 26651498 26651796 -255541868 - L1MDa LINE L1 -6145 395 119 2284 93 0 32 chr1 26651796 26652108 -255541556 - AluSq SINE Alu -11 302 1 1727 167 20 68 chr1 26652108 26652205 -255541459 - L1MDa LINE L1 -6421 119 19 2417 59 0 3 chr1 26652279 26652568 -255541096 + AluY SINE Alu 1 288 -23 182 196 22 0 chr1 26653626 26653672 -255539992 - MIR SINE MIR -126 82 36 851 281 44 35 chr1 26654198 26654321 -255539343 + L1ME4a LINE L1 5839 5959 -398 941 165 41 16 chr1 26654321 26654515 -255539149 + L1PA16 LINE L1 5965 6163 -3 851 281 44 35 chr1 26654515 26654825 -255538839 + L1ME4a LINE L1 5959 6276 -81 21 36 0 0 chr1 26654887 26654915 -255538749 + AT_rich Low_complexity Low_complexity 1 28 0 923 276 60 3 chr1 26656096 26656397 -255537267 + LTR16C LTR ERVL 173 490 -1 217 274 75 55 chr1 26657034 26657180 -255536484 + MER5A DNA MER1_type 41 189 0 896 254 44 4 chr1 26657645 26657873 -255535791 - MIR SINE MIR 0 262 26 1536 170 3 70 chr1 26657980 26658292 -255535372 + AluJo SINE Alu 3 293 -19 472 216 11 0 chr1 26658318 26658406 -255535258 - AluS SINE Alu -217 95 7 721 232 76 16 chr1 26658757 26658942 -255534722 - MER117 DNA MER1_type -1 196 1 438 174 0 70 chr1 26659691 26659777 -255533887 + MER63 DNA MER1_type 42 747 -315 391 217 58 80 chr1 26659837 26659975 -255533689 - MIR3 SINE MIR -54 154 20 484 278 162 15 chr1 26660077 26660275 -255533389 + MIR SINE MIR 19 245 -17 293 250 60 36 chr1 26660713 26660797 -255532867 + MER5B DNA MER1_type 1 86 -92 24 0 0 0 chr1 26661147 26661171 -255532493 + AT_rich Low_complexity Low_complexity 1 24 0 183 250 181 0 chr1 26661180 26661252 -255532412 - L3 LINE CR1 -908 669 585 739 328 92 35 chr1 26661292 26661379 -255532285 - L2 LINE L2 -27 3286 3205 342 0 0 0 chr1 26661379 26661417 -255532247 + (TG)n Simple_repeat Simple_repeat 2 39 0 739 328 92 35 chr1 26661417 26661568 -255532096 - L2 LINE L2 -108 3205 3064 4726 72 10 3 chr1 26661568 26662190 -255531474 - L1PA11 LINE L1 -2 6172 5547 739 328 92 35 chr1 26662190 26662435 -255531229 - L2 LINE L2 -249 3064 2779 284 275 56 63 chr1 26662425 26662567 -255531097 - MER5B DNA MER1_type -36 142 2 * 303 319 44 0 chr1 26662625 26662738 -255530926 + L1MC4 LINE L1 7924 8041 -1 187 319 0 0 chr1 26662750 26662797 -255530867 - MER5B DNA MER1_type -130 48 2 712 270 56 0 chr1 26663047 26663225 -255530439 - MER91A DNA MER1_type -1 195 8 264 247 200 12 chr1 26663240 26663325 -255530339 - L2 LINE L2 -1 3271 3171 2470 229 111 6 chr1 26663913 26664586 -255529078 + L1ME3A LINE L1 5417 6160 -10 22 94 0 0 chr1 26664587 26664651 -255529013 + AT_rich Low_complexity Low_complexity 1 64 0 1345 235 53 16 chr1 26665119 26665438 -255528226 + L1ME3A LINE L1 5518 5848 -322 446 312 118 16 chr1 26665864 26666050 -255527614 - MIR SINE MIR -25 237 33 253 189 108 40 chr1 26666327 26666401 -255527263 + MIR SINE MIR 72 150 -112 277 217 0 0 chr1 26666549 26666595 -255527069 - L2 LINE L2 -8 3264 3219 1733 172 0 25 chr1 26666723 26667037 -255526627 + AluJb SINE Alu 1 306 -6 397 279 11 15 chr1 26667610 26667803 -255525861 + MIR SINE MIR 1 262 0 475 256 15 23 chr1 26667828 26667961 -255525703 - MIR3 SINE MIR -62 146 15 1719 98 105 51 chr1 26668015 26668311 -255525353 - AluSx SINE Alu 0 312 1 227 284 28 78 chr1 26668983 26669124 -255524540 - L2 LINE L2 -86 3227 3094 862 191 12 0 chr1 26669334 26669502 -255524162 - FRAM SINE Alu -8 168 1 1983 163 20 8 chr1 26669854 26670211 -255523453 - L1MB8 LINE L1 0 6178 5818 254 306 81 6 chr1 26670661 26670821 -255522843 + Charlie7 DNA MER1_type 2435 2606 -6 782 158 0 8 chr1 26670847 26670980 -255522684 + AluJo SINE Alu 2 133 -169 1229 124 0 60 chr1 26671778 26671979 -255521685 + AluSx SINE Alu 1 189 -123 1987 127 3 0 chr1 26672060 26672371 -255521293 - AluSx SINE Alu 0 312 1 667 230 142 5 chr1 26672828 26673032 -255520632 - MIR SINE MIR -30 232 1 755 182 74 0 chr1 26673454 26673602 -255520062 + AluJo SINE Alu 136 294 -18 387 287 90 7 chr1 26674425 26674562 -255519102 + MIR SINE MIR 38 184 -61 441 236 176 6 chr1 26675404 26675569 -255518095 + L1MD3 LINE L1 7789 7981 -14 563 326 81 27 chr1 26676083 26676567 -255517097 + L1MC4a LINE L1 5376 5885 -1923 2342 80 0 0 chr1 26676569 26676868 -255516796 + AluSp SINE Alu 1 299 -14 2032 115 14 7 chr1 26676894 26677189 -255516475 + AluSq SINE Alu 1 297 -16 1883 218 37 70 chr1 26677194 26677254 -255516410 + L1ME2 LINE L1 5610 5670 -494 3113 58 0 5 chr1 26677254 26677631 -255516033 - THE1C LTR MaLR 0 375 1 1883 218 37 70 chr1 26677631 26677794 -255515870 + L1ME2 LINE L1 5670 5837 -327 2010 117 0 0 chr1 26677794 26678085 -255515579 + AluSx SINE Alu 1 291 -21 1883 218 37 70 chr1 26678085 26678125 -255515539 + L1ME2 LINE L1 5837 5877 -287 1586 81 2 229 chr1 26678125 26678522 -255515142 + AluSx SINE Alu 1 307 -5 1883 218 37 70 chr1 26678522 26678829 -255514835 + L1ME2 LINE L1 5877 6163 -1 185 250 0 11 chr1 26680664 26680752 -255512912 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 355 231 15 15 chr1 26680948 26681045 -255512619 + MIR SINE MIR 17 115 -93 802 185 20 0 chr1 26681431 26681582 -255512082 + MER90 LTR ERV1 1 154 -421 29 0 0 0 chr1 26681610 26681639 -255512025 + AT_rich Low_complexity Low_complexity 1 29 0 2047 198 36 7 chr1 26681641 26682060 -255511604 + MER90 LTR ERV1 184 614 0 602 244 68 34 chr1 26682266 26682442 -255511222 + MIR SINE MIR 9 190 -72 445 249 169 80 chr1 26682472 26682491 -255511173 + MIR SINE MIR 17 33 -229 2285 66 0 44 chr1 26682491 26682808 -255510856 + AluY SINE Alu 1 303 -8 445 249 169 80 chr1 26682808 26683013 -255510651 + MIR SINE MIR 33 261 -1 590 229 33 8 chr1 26683057 26683179 -255510485 + FLAM_A SINE Alu 1 125 -8 1666 134 3 31 chr1 26683334 26683658 -255510006 + AluJb SINE Alu 1 316 0 558 265 22 43 chr1 26685617 26685802 -255507862 - MER5A DNA MER1_type -4 185 5 265 289 202 9 chr1 26686194 26686308 -255507356 - L2 LINE L2 -8 3264 3129 1807 137 10 26 chr1 26686601 26686908 -255506756 + AluJo SINE Alu 1 302 -10 978 162 0 0 chr1 26688338 26688486 -255505178 + MER3 DNA MER1_type 1 148 -61 700 179 113 67 chr1 26688580 26688602 -255505062 + MIR SINE MIR 14 34 -228 2173 87 3 35 chr1 26688602 26688914 -255504750 + AluSp SINE Alu 1 302 -11 700 179 113 67 chr1 26688914 26689086 -255504578 + MIR SINE MIR 34 217 -45 670 288 84 9 chr1 26689311 26689441 -255504223 - MIR SINE MIR -12 250 131 1715 151 3 51 chr1 26689441 26689752 -255503912 + AluJo SINE Alu 1 296 -16 670 288 84 9 chr1 26689752 26689847 -255503817 - MIR SINE MIR -131 131 8 2341 89 0 0 chr1 26690038 26690342 -255503322 + AluSc SINE Alu 1 304 -5 23 0 0 0 chr1 26690863 26690886 -255502778 + AT_rich Low_complexity Low_complexity 1 23 0 246 226 75 62 chr1 26691318 26691368 -255502296 - L1M LINE L1 -2391 5417 5369 2237 109 0 0 chr1 26691368 26691671 -255501993 - AluSq SINE Alu -10 303 1 246 226 75 62 chr1 26691671 26691766 -255501898 - L1M LINE L1 -2439 5369 5270 365 301 127 37 chr1 26692098 26692420 -255501244 - L1 LINE L1 -1116 5030 4680 200 279 154 39 chr1 26692644 26692748 -255500916 - MIR SINE MIR -70 138 23 711 270 80 26 chr1 26692772 26692998 -255500666 - MIR SINE MIR -7 255 18 28 29 0 0 chr1 26693029 26693064 -255500600 + AT_rich Low_complexity Low_complexity 1 35 0 2197 116 3 0 chr1 26693193 26693504 -255500160 - AluSq SINE Alu 0 313 2 1528 162 9 58 chr1 26693512 26693840 -255499824 - AluJb SINE Alu 0 312 1 418 139 63 0 chr1 26693868 26693947 -255499717 - LTR50 LTR ERVL -2 793 710 939 124 0 0 chr1 26693949 26694078 -255499586 + FLAM_C SINE Alu 1 129 -14 854 192 69 54 chr1 26694087 26694342 -255499322 - LTR50 LTR ERVL -89 706 445 2264 103 0 0 chr1 26694342 26694644 -255499020 + AluSx SINE Alu 1 302 -10 854 192 69 54 chr1 26694644 26694664 -255499000 - LTR50 LTR ERVL -350 445 427 2193 101 0 0 chr1 26694973 26695269 -255498395 + AluSx SINE Alu 1 296 -16 273 244 47 35 chr1 26695583 26695669 -255497995 + HAL1 LINE L1 811 897 -1610 1462 126 0 160 chr1 26695676 26696032 -255497632 + AluJb SINE Alu 1 299 -13 2125 94 3 0 chr1 26696122 26696409 -255497255 - AluSq SINE Alu -25 288 1 182 256 179 13 chr1 26696447 26696525 -255497139 - L2 LINE L2 -21 3251 3161 2275 156 54 20 chr1 26696711 26697153 -255496511 - MER45B DNA AcHobo -21 1019 563 450 95 0 0 chr1 26697153 26697216 -255496448 + FRAM/FAM SINE Alu 19 81 -95 951 162 16 22 chr1 26697216 26697401 -255496263 + AluJo SINE Alu 114 297 -15 1919 201 74 88 chr1 26697401 26697674 -255495990 - MER45B DNA AcHobo -465 575 300 2160 94 0 16 chr1 26697674 26697983 -255495681 + AluSx SINE Alu 1 304 -8 1689 131 0 32 chr1 26697984 26698267 -255495397 - AluSx SINE Alu -38 274 1 1919 201 74 88 chr1 26698267 26698574 -255495090 - MER45B DNA AcHobo -739 301 1 1818 131 0 0 chr1 26699002 26699270 -255494394 + AluSx SINE Alu 1 268 -44 1722 158 13 3 chr1 26699961 26700264 -255493400 + AluJo SINE Alu 1 306 -6 1264 158 87 38 chr1 26700332 26700597 -255493067 - AluJo SINE Alu -34 278 1 1820 26 9 22 chr1 26700786 26701016 -255492648 - L1PA6 LINE L1 0 6154 5928 649 220 119 37 chr1 26701115 26701333 -255492331 + MIR SINE MIR 21 256 -6 1911 89 3 56 chr1 26701339 26701667 -255491997 - AluSg SINE Alu 0 312 1 278 100 0 0 chr1 26701990 26702030 -255491634 + LTR50 LTR ERVL 2 41 -754 709 199 294 21 chr1 26702060 26702387 -255491277 + LTR50 LTR ERVL 15 430 -365 520 180 72 0 chr1 26702396 26702535 -255491129 - L1MB7 LINE L1 0 6184 6036 332 181 11 106 chr1 26702525 26702619 -255491045 + L1MB3 LINE L1 5471 5555 -616 * 1732 100 52 0 chr1 26702619 26702868 -255490796 + AluSg SINE Alu 43 304 -6 568 99 0 63 chr1 26702877 26703019 -255490645 + (GGAA)n Simple_repeat Simple_repeat 1 133 0 2353 158 18 87 chr1 26703019 26703076 -255490588 + L1MB3 LINE L1 5551 5610 -573 2053 108 10 0 chr1 26703076 26703371 -255490293 + AluSx SINE Alu 1 298 -14 2353 158 18 87 chr1 26703371 26703471 -255490193 + L1MB3 LINE L1 5610 5715 -468 2697 99 0 8 chr1 26703471 26703836 -255489828 - THE1B LTR MaLR -2 362 1 2353 158 18 87 chr1 26703836 26703993 -255489671 + L1MB3 LINE L1 5715 5881 -302 2313 64 0 10 chr1 26703993 26704289 -255489375 + AluY SINE Alu 1 293 -18 2353 158 18 87 chr1 26704289 26704554 -255489110 + L1MB3 LINE L1 5881 6069 -114 559 159 0 0 chr1 26704554 26704642 -255489022 + FRAM SINE Alu 73 160 -16 230 284 108 0 chr1 26704673 26704775 -255488889 - LTR50 LTR ERVL -119 676 564 518 163 0 0 chr1 26704775 26704873 -255488791 + L1MB3 LINE L1 6085 6182 -1 961 178 93 9 chr1 26704873 26705087 -255488577 - L1MB5 LINE L1 -139 6035 5804 290 200 17 0 chr1 26705092 26705152 -255488512 + LTR50 LTR ERVL 552 612 -183 1375 191 20 31 chr1 26705163 26705682 -255487982 + pTR5 LTR ERV1 772 1332 -1106 3223 151 86 74 chr1 26705698 26706374 -255487290 + LTR12 LTR ERV1 5 688 0 541 232 79 6 chr1 26706389 26706474 -255487190 + LTR50 LTR ERVL 619 696 -99 1427 203 24 24 chr1 26706474 26706772 -255486892 - AluJo SINE Alu -17 295 1 541 232 79 6 chr1 26706772 26706850 -255486814 + LTR50 LTR ERVL 696 794 -1 205 322 68 53 chr1 26707299 26707527 -255486137 - MIR SINE MIR 0 262 40 246 164 16 82 chr1 26707608 26707669 -255485995 + L1ME LINE L1 5534 5590 -531 1482 160 92 18 chr1 26707783 26707940 -255485724 - AluJb SINE Alu -9 303 159 333 0 0 0 chr1 26707940 26707977 -255485687 + (TG)n Simple_repeat Simple_repeat 2 38 0 1482 160 92 18 chr1 26707977 26708101 -255485563 - AluJb SINE Alu -153 159 1 1947 144 41 47 chr1 26708103 26708386 -255485278 + MER47A DNA MER2_type 6 288 -2035 2048 137 3 0 chr1 26708386 26708679 -255484985 + AluSx SINE Alu 1 294 -18 1947 144 41 47 chr1 26708679 26708757 -255484907 + MER47A DNA MER2_type 288 365 -1 1581 148 8 19 chr1 26708978 26709235 -255484429 - AluJb SINE Alu -35 277 24 1904 159 0 13 chr1 26709239 26709540 -255484124 - AluJb SINE Alu -15 297 1 757 264 90 13 chr1 26709820 26710130 -255483534 + L1ME4a LINE L1 5556 5889 -232 1800 123 11 73 chr1 26710220 26710281 -255483383 - MER4A LTR ERV1 -2 662 599 2502 64 0 3 chr1 26710281 26710577 -255483087 + AluY SINE Alu 1 295 -16 1800 123 11 73 chr1 26710577 26710881 -255482783 - MER4A LTR ERV1 -65 599 261 630 72 31 21 chr1 26710881 26710978 -255482686 - MER4A LTR ERV1 -566 98 1 369 272 39 56 chr1 26711450 26711630 -255482034 - L2 LINE L2 -17 3296 3120 775 201 129 68 chr1 26711665 26711928 -255481736 - MLT1J LTR MaLR -2 509 231 2437 107 0 0 chr1 26711932 26712242 -255481422 + AluSg SINE Alu 1 310 0 545 146 42 10 chr1 26712415 26712511 -255481153 + AluJo SINE Alu 36 134 -178 312 181 36 48 chr1 26712523 26712606 -255481058 - MIR SINE MIR -119 143 62 383 188 0 0 chr1 26712786 26712850 -255480814 + L2 LINE L2 3210 3273 -40 1880 188 58 52 chr1 26712867 26713204 -255480460 - L1ME2 LINE L1 -116 6048 5705 1931 129 24 3 chr1 26713204 26713498 -255480166 - AluSq SINE Alu -13 300 1 1880 188 58 52 chr1 26713498 26713677 -255479987 - L1ME2 LINE L1 -459 5705 5529 502 325 12 0 chr1 26714398 26714567 -255479097 + L2 LINE L2 2459 2629 -685 1310 268 63 35 chr1 26714683 26715145 -255478519 - LTR33 LTR ERVL -46 475 1 1118 283 86 8 chr1 26715145 26715425 -255478239 + MLT1K LTR MaLR 76 451 -137 2699 42 0 10 chr1 26715425 26715737 -255477927 + AluY SINE Alu 1 309 -2 1118 283 86 8 chr1 26715737 26715886 -255477778 + MLT1K LTR MaLR 451 587 -1 1948 141 40 13 chr1 26716237 26716541 -255477123 + AluJb SINE Alu 1 312 0 841 126 0 8 chr1 26717015 26717142 -255476522 - FLAM_A SINE Alu -10 132 7 241 240 0 0 chr1 26717497 26717547 -255476117 + GA-rich Low_complexity Low_complexity 3 52 0 255 133 0 0 chr1 26717550 26717595 -255476069 + (GGGGA)n Simple_repeat Simple_repeat 4 48 0 203 148 37 0 chr1 26718046 26718100 -255475564 + C-rich Low_complexity Low_complexity 5 60 0 225 0 0 0 chr1 26718473 26718498 -255475166 + (CGGGG)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr1 26718523 26718547 -255475117 + (A)n Simple_repeat Simple_repeat 1 24 0 1744 144 75 7 chr1 26719485 26719777 -255473887 - AluJb SINE Alu 0 312 1 1738 140 77 0 chr1 26720542 26720827 -255472837 - AluJb SINE Alu 0 312 6 24 32 0 0 chr1 26721137 26721168 -255472496 + AT_rich Low_complexity Low_complexity 1 31 0 379 210 49 12 chr1 26721511 26721592 -255472072 + AluJ/FRAM SINE Alu 219 302 0 1031 191 75 72 chr1 26721663 26722009 -255471655 + L1MC4 LINE L1 7696 8042 0 181 371 89 19 chr1 26722460 26722719 -255470945 + L2 LINE L2 2811 3087 -185 1786 87 35 131 chr1 26723108 26723452 -255470212 + AluSq SINE Alu 1 311 -2 13516 110 41 8 chr1 26723998 26724193 -255469471 - Tigger1 DNA MER2_type -10 2408 2221 1827 156 3 21 chr1 26724193 26724481 -255469183 + AluJb SINE Alu 6 288 -24 13516 110 41 8 chr1 26724481 26726323 -255467341 - Tigger1 DNA MER2_type -197 2221 304 2283 75 0 7 chr1 26726341 26726657 -255467007 + AluSc SINE Alu 1 314 0 1834 160 36 0 chr1 26726843 26727149 -255466515 - Tigger1 DNA MER2_type -2101 317 1 1999 111 4 0 chr1 26727411 26727672 -255465992 + AluSx SINE Alu 35 296 -16 2454 69 0 0 chr1 26728265 26728554 -255465110 + AluY SINE Alu 1 289 -22 687 136 7 130 chr1 26728576 26728693 -255464971 - AluJo SINE Alu -176 136 41 1935 120 42 11 chr1 26728693 26728976 -255464688 + AluSx SINE Alu 1 292 -20 687 136 7 130 chr1 26728976 26729012 -255464652 - AluJo SINE Alu -271 41 2 2187 123 0 0 chr1 26729996 26730296 -255463368 + AluSx SINE Alu 1 300 -12 286 194 108 43 chr1 26730327 26730420 -255463244 + MER5C DNA MER1_type 226 324 0 333 0 0 0 chr1 26730737 26730774 -255462890 + (TG)n Simple_repeat Simple_repeat 1 37 0 2384 98 0 0 chr1 26731172 26731477 -255462187 + AluSg SINE Alu 1 305 -5 843 141 0 0 chr1 26731492 26731620 -255462044 + FLAM_C SINE Alu 1 128 -5 2169 115 0 31 chr1 26732404 26732726 -255460938 - AluSx SINE Alu 0 312 1 848 142 0 16 chr1 26733020 26733147 -255460517 + FLAM_C SINE Alu 1 125 -8 918 128 0 0 chr1 26733352 26733477 -255460187 + FLAM_C SINE Alu 1 125 -18 1882 165 0 35 chr1 26733892 26734068 -255459596 - AluJb SINE Alu -8 304 123 239 0 32 0 chr1 26734068 26734099 -255459565 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1952 148 0 7 chr1 26734101 26734385 -255459279 - AluSx SINE Alu -30 282 1 1882 165 0 35 chr1 26734385 26734520 -255459144 - AluJb SINE Alu -190 122 1 959 128 0 0 chr1 26734528 26734661 -255459003 - FLAM_C SINE Alu 0 133 1 199 260 20 0 chr1 26735021 26735071 -255458593 + L2 LINE L2 3222 3272 0 2992 71 1 22 chr1 26735685 26736178 -255457486 + L1PA4 LINE L1 4461 6178 0 2073 209 25 9 chr1 26736178 26736624 -255457040 + L1 LINE L1 4550 5002 -1144 630 142 9 9 chr1 26736624 26736730 -255456934 + FLAM_A SINE Alu 32 137 -5 256 136 0 0 chr1 26736732 26736776 -255456888 + L1P LINE L1 5002 5045 -1101 2309 118 0 0 chr1 26736875 26737179 -255456485 + AluSx SINE Alu 1 304 -8 983 159 72 0 chr1 26737191 26737398 -255456266 + L1MB4 LINE L1 5958 6179 -1 235 238 16 0 chr1 26737443 26737506 -255456158 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 422 305 67 49 chr1 26737684 26738028 -255455636 + LTR16C LTR ERVL 142 491 0 439 154 13 0 chr1 26738275 26738353 -255455311 - MER116 DNA Mariner -1 79 1 2201 81 0 4 chr1 26738377 26738648 -255455016 - AluSx SINE Alu -16 296 27 458 279 95 0 chr1 26738650 26738808 -255454856 + L1M4 LINE L1 4195 4367 -1779 189 213 0 0 chr1 26738834 26738881 -255454783 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 351 0 0 0 chr1 26738913 26738952 -255454712 + (CA)n Simple_repeat Simple_repeat 2 40 0 648 153 0 0 chr1 26738958 26739056 -255454608 - AluSg/x SINE Alu -19 290 193 21 26 0 26 chr1 26739234 26739253 -255454411 + AT_rich Low_complexity Low_complexity 1 19 -19 1992 96 0 15 chr1 26739253 26739525 -255454139 + AluSx SINE Alu 1 268 -44 21 26 0 26 chr1 26739525 26739544 -255454120 + AT_rich Low_complexity Low_complexity 19 38 0 950 117 0 0 chr1 26740128 26740265 -255453399 - AluSg/x SINE Alu -1 311 175 1342 179 0 0 chr1 26741419 26741631 -255452033 - AluJo SINE Alu -30 282 71 1614 131 112 0 chr1 26742353 26742612 -255451052 - AluSg SINE Alu -22 288 1 1200 272 69 60 chr1 26743570 26744434 -255449230 + L1MEc LINE L1 2153 3003 -3212 817 143 14 14 chr1 26744440 26744580 -255449084 + AluJo SINE Alu 6 145 -167 1498 148 54 40 chr1 26744580 26744858 -255448806 + AluJo SINE Alu 1 282 -30 2376 100 0 0 chr1 26744860 26745160 -255448504 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 26745163 26745187 -255448477 + AT_rich Low_complexity Low_complexity 1 24 0 664 171 120 0 chr1 26745207 26745324 -255448340 + FLAM_A SINE Alu 1 131 -2 1899 172 0 10 chr1 26745381 26745689 -255447975 + AluJb SINE Alu 2 306 -6 2092 119 4 0 chr1 26746048 26746326 -255447338 + AluSx SINE Alu 11 289 -23 574 193 140 53 chr1 26746945 26747116 -255446548 + MER105 DNA DNA 1 186 -18 2228 116 0 0 chr1 26747514 26747836 -255445828 - AluSx SINE Alu 0 322 1 327 327 27 0 chr1 26747849 26747959 -255445705 - L2 LINE L2 -5 3267 3155 2424 80 10 13 chr1 26747976 26748288 -255445376 + AluY SINE Alu 1 311 0 519 260 41 46 chr1 26748636 26748827 -255444837 + MIR SINE MIR 2 192 -66 2130 135 3 3 chr1 26748827 26749130 -255444534 + AluSx SINE Alu 1 303 -9 2435 69 0 16 chr1 26749630 26749936 -255443728 + AluY SINE Alu 1 301 -10 1427 98 0 0 chr1 26749936 26750119 -255443545 + AluSc SINE Alu 108 290 -19 27 73 0 0 chr1 26752664 26752719 -255440945 + AT_rich Low_complexity Low_complexity 1 55 0 2171 92 10 10 chr1 26752926 26753219 -255440445 + AluSp SINE Alu 1 293 -20 2235 58 0 38 chr1 26753690 26754024 -255439640 - AluY SINE Alu 0 323 1 849 165 0 0 chr1 26754127 26754254 -255439410 + FLAM_A SINE Alu 1 127 -6 244 235 15 15 chr1 26754337 26754405 -255439259 - MIR3 SINE MIR -22 186 119 231 241 52 0 chr1 26756968 26757026 -255436638 - MIR SINE MIR -109 99 39 1731 159 69 0 chr1 26757111 26757387 -255436277 - AluJb SINE Alu -17 295 1 2230 117 3 0 chr1 26757652 26757943 -255435721 - AluSx SINE Alu -20 292 1 391 319 91 13 chr1 26758325 26758566 -255435098 + L1ME LINE L1 4980 5201 -965 2662 173 22 85 chr1 26758566 26758666 -255434998 - MER41C LTR ERV1 0 554 449 2379 88 7 3 chr1 26758666 26758974 -255434690 - AluSp SINE Alu -4 309 1 2662 173 22 85 chr1 26758974 26759010 -255434654 - MER41C LTR ERV1 -105 449 412 2396 117 0 0 chr1 26759010 26759319 -255434345 + AluSx SINE Alu 1 309 -3 2662 173 22 85 chr1 26759319 26759772 -255433892 - MER41C LTR ERV1 -142 412 1 391 319 91 13 chr1 26759772 26760148 -255433516 + L1ME LINE L1 5201 5638 -528 1639 185 145 17 chr1 26761356 26761524 -255432140 - MLT1F LTR MaLR 0 542 397 2452 187 72 112 chr1 26761524 26762134 -255431530 + LTR1B LTR ERV1 1 570 -256 2416 68 0 0 chr1 26762134 26762444 -255431220 + AluSc SINE Alu 1 310 0 2452 187 72 112 chr1 26762444 26762692 -255430972 + LTR1B LTR ERV1 570 826 0 1639 185 145 17 chr1 26762692 26762944 -255430720 - MLT1F LTR MaLR -145 397 68 264 242 132 11 chr1 26763132 26763223 -255430441 - MLT1K LTR MaLR -278 310 209 2271 113 0 10 chr1 26763825 26764126 -255429538 + AluSx SINE Alu 4 301 -11 206 257 14 54 chr1 26764307 26764381 -255429283 + L2 LINE L2 3197 3267 -5 2189 139 3 0 chr1 26764604 26764906 -255428758 - AluSx SINE Alu -9 303 1 1385 185 42 8 chr1 26765154 26765414 -255428250 + MER66B LTR ERV1 1 269 -217 315 70 0 0 chr1 26765414 26765457 -255428207 + Alu SINE Alu 1 43 -260 452 292 48 30 chr1 26765504 26765672 -255427992 - MER5B DNA MER1_type 0 178 8 2129 130 0 0 chr1 26765877 26766176 -255427488 - AluSx SINE Alu -13 299 1 511 258 145 32 chr1 26766250 26766307 -255427357 + L2 LINE L2 3107 3156 -157 1962 163 0 0 chr1 26766307 26766607 -255427057 - AluJb SINE Alu -12 300 1 511 258 145 32 chr1 26766607 26766735 -255426929 + L2 LINE L2 3156 3313 0 448 266 89 0 chr1 26766734 26766858 -255426806 - MIR3 SINE MIR -69 139 5 * 353 239 33 0 chr1 26767195 26767287 -255426377 - MIR3 SINE MIR -24 184 90 228 67 0 0 chr1 26767610 26767640 -255426024 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 2032 95 0 53 chr1 26768018 26768303 -255425361 - AluSx SINE Alu -15 297 28 1654 188 3 13 chr1 26768441 26768755 -255424909 - AluJb SINE Alu -1 311 1 276 287 124 74 chr1 26768780 26769322 -255424342 + L2 LINE L2 2737 3309 -4 369 223 173 22 chr1 26769640 26769779 -255423885 - MIR SINE MIR -52 210 51 850 182 6 6 chr1 26770098 26770257 -255423407 + FRAM SINE Alu 1 158 -18 1779 135 35 61 chr1 26770259 26770570 -255423094 + AluSx SINE Alu 1 303 -9 301 338 133 0 chr1 26770721 26770872 -255422792 + MIR3 SINE MIR 37 207 -1 243 284 0 30 chr1 26770855 26770922 -255422742 - L2 LINE L2 -9 3304 3240 * 207 183 0 56 chr1 26771344 26771415 -255422249 + G-rich Low_complexity Low_complexity 3 69 0 364 315 28 0 chr1 26772153 26772261 -255421403 + L2 LINE L2 3158 3268 -4 243 165 16 0 chr1 26773686 26773742 -255419922 + MIR SINE MIR 96 135 -73 2690 46 0 0 chr1 26773771 26774078 -255419586 + AluY SINE Alu 1 307 -4 206 175 25 0 chr1 26774166 26774206 -255419458 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1648 139 12 8 chr1 26774400 26774652 -255419012 + AluJo SINE Alu 46 298 -14 863 202 121 24 chr1 26774864 26774945 -255418719 + ORSL DNA AcHobo 3 75 -200 2145 106 0 45 chr1 26774945 26775257 -255418407 + AluSq SINE Alu 3 300 -13 863 202 121 24 chr1 26775257 26775423 -255418241 + ORSL DNA AcHobo 75 274 -1 2293 103 3 3 chr1 26775521 26775822 -255417842 + AluSx SINE Alu 1 301 -11 632 258 30 6 chr1 26776126 26776293 -255417371 - MIR SINE MIR 0 262 92 388 310 101 16 chr1 26776315 26776444 -255417220 + L2 LINE L2 3133 3272 0 323 293 138 22 chr1 26776887 26777068 -255416596 + HAL1 LINE L1 841 1042 -1465 2417 89 3 3 chr1 26777129 26777442 -255416222 + AluSp SINE Alu 1 313 0 301 350 0 26 chr1 26777906 26778023 -255415641 + L1ME LINE L1 825 938 -5132 431 287 91 48 chr1 26778037 26778117 -255415547 + HAL1b LINE L1 368 443 -905 2373 102 0 13 chr1 26778117 26778432 -255415232 + AluSx SINE Alu 1 311 -1 431 287 91 48 chr1 26778432 26778913 -255414751 + HAL1b LINE L1 443 616 -732 660 218 65 0 chr1 26779289 26779459 -255414205 - MER113 DNA MER1_type? -195 326 146 423 0 0 0 chr1 26779462 26779509 -255414155 + (TG)n Simple_repeat Simple_repeat 2 48 0 1870 128 14 31 chr1 26779509 26779704 -255413960 - AluJb SINE Alu -27 285 95 2240 141 11 16 chr1 26779704 26780080 -255413584 + THE1C LTR MaLR 1 374 -1 1870 128 14 31 chr1 26780080 26780174 -255413490 - AluJb SINE Alu -217 95 1 692 229 18 6 chr1 26780174 26780340 -255413324 - MLT1G1 LTR MaLR -423 172 5 247 379 71 14 chr1 26781061 26781201 -255412463 - L2 LINE L2 -3 3269 3122 183 273 45 34 chr1 26781324 26781412 -255412252 - MIR SINE MIR -6 256 168 309 250 190 0 chr1 26781523 26781623 -255412041 - MIR SINE MIR -123 139 21 609 262 23 35 chr1 26782416 26782588 -255411076 - MIR SINE MIR -13 249 80 881 142 0 8 chr1 26782681 26782815 -255410849 - FLAM_A SINE Alu 0 133 1 228 35 0 0 chr1 26782901 26782930 -255410734 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1875 109 74 0 chr1 26782930 26783187 -255410477 - AluSx SINE Alu -36 276 1 908 178 47 138 chr1 26783439 26783715 -255409949 + MIR SINE MIR 2 252 -10 466 238 114 0 chr1 26783743 26783848 -255409816 + MIR SINE MIR 24 140 -122 1200 194 28 35 chr1 26783850 26784139 -255409525 - AluJo SINE Alu -11 291 5 2399 73 10 13 chr1 26835852 26836152 -255357512 + AluSx SINE Alu 1 299 -13 242 220 150 10 chr1 26836353 26836453 -255357211 + L1ME4a LINE L1 6004 6117 -4 2082 124 3 3 chr1 26836468 26836759 -255356905 + AluSx SINE Alu 5 295 -17 211 294 0 0 chr1 26836769 26836820 -255356844 - MIR SINE MIR -77 131 81 483 267 38 35 chr1 26836914 26837155 -255356509 - MIR SINE MIR -18 244 6 629 155 10 0 chr1 26837505 26837608 -255356056 + AluJb SINE Alu 9 112 -200 313 177 56 5 chr1 26837711 26837874 -255355790 + L1MB8 LINE L1 5884 6130 -48 1063 229 175 23 chr1 26837984 26838465 -255355199 + L1MD3 LINE L1 7429 7982 -13 192 40 0 0 chr1 26838638 26838663 -255355001 + (T)n Simple_repeat Simple_repeat 1 25 0 428 357 0 27 chr1 26838717 26838902 -255354762 + CT-rich Low_complexity Low_complexity 1 180 0 206 262 24 24 chr1 26838879 26838963 -255354701 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 * 323 286 23 15 chr1 26839012 26839145 -255354519 + CT-rich Low_complexity Low_complexity 1 134 0 2136 133 3 3 chr1 26839409 26839703 -255353961 - AluJb SINE Alu -13 299 6 2605 65 0 3 chr1 26839769 26840075 -255353589 - AluSc SINE Alu 0 309 5 2038 147 59 7 chr1 26840379 26840565 -255353099 + L1M4 LINE L1 5378 5553 -631 2461 75 3 10 chr1 26840565 26840873 -255352791 + AluSq SINE Alu 1 306 -7 2038 147 59 7 chr1 26840873 26841093 -255352571 + L1M4 LINE L1 5553 5805 -379 363 211 57 68 chr1 26841101 26841150 -255352514 + AluJb SINE Alu 1 49 -253 3581 134 72 7 chr1 26841150 26841746 -255351918 - MER41B LTR ERV1 0 635 1 363 211 57 68 chr1 26841746 26841855 -255351809 + AluJb SINE Alu 49 143 -159 442 199 76 88 chr1 26842073 26842244 -255351420 - MIR SINE MIR -54 208 40 1568 165 4 8 chr1 26842322 26842576 -255351088 - AluJb SINE Alu -59 253 1 191 267 44 78 chr1 26842635 26842725 -255350939 - L2 LINE L2 0 3313 3227 290 357 115 29 chr1 26842847 26843091 -255350573 - L2 LINE L2 -341 2973 2709 1074 81 15 0 chr1 26843269 26843405 -255350259 + AluSq/x SINE Alu 1 138 -174 2457 75 0 22 chr1 26843405 26843723 -255349941 + AluY SINE Alu 1 311 0 1860 178 0 10 chr1 26843733 26844036 -255349628 + AluJb SINE Alu 1 300 -12 198 0 0 0 chr1 26844450 26844472 -255349192 + (TA)n Simple_repeat Simple_repeat 2 23 0 2598 34 10 0 chr1 26844472 26844768 -255348896 - AluY SINE Alu -11 300 2 238 241 35 0 chr1 26844772 26844830 -255348834 - L2 LINE L2 -8 3305 3246 298 300 179 14 chr1 26844957 26845097 -255348567 - MER5A DNA MER1_type -9 180 18 2332 92 3 0 chr1 26846001 26846294 -255347370 + AluSx SINE Alu 1 294 -18 1653 257 58 19 chr1 26846801 26847264 -255346400 + L2 LINE L2 2826 3306 -7 2505 74 0 3 chr1 26847264 26847563 -255346101 + AluSp SINE Alu 1 298 -15 608 192 75 34 chr1 26847806 26847952 -255345712 + MIR SINE MIR 8 159 -103 251 205 205 110 chr1 26847953 26848080 -255345584 + MIR SINE MIR 124 262 0 378 220 247 40 chr1 26848193 26848206 -255345458 - MIR SINE MIR -61 201 192 2377 113 0 0 chr1 26848206 26848516 -255345148 - AluSx SINE Alu -2 310 1 378 220 247 40 chr1 26848516 26848652 -255345012 - MIR SINE MIR -70 192 21 2216 105 0 3 chr1 26849135 26849439 -255344225 + AluSg SINE Alu 1 303 -7 2247 100 3 0 chr1 26849726 26850017 -255343647 - AluSp SINE Alu -21 292 1 2157 109 7 7 chr1 26850080 26850374 -255343290 - AluSq SINE Alu -19 294 1 839 198 0 19 chr1 26850386 26850543 -255343121 - AluJb SINE Alu -13 299 146 989 97 131 11 chr1 26850708 26850883 -255342781 + pTR5 LTR ERV1 1830 2025 -413 280 258 31 21 chr1 26850884 26850981 -255342683 + LTR30 LTR ERV1 545 642 -80 2166 122 0 27 chr1 26850981 26851317 -255342347 + pTR5 LTR ERV1 66 392 -2046 299 120 84 30 chr1 26851317 26851349 -255342315 - Alu SINE Alu -13 289 290 2183 111 3 3 chr1 26851349 26851646 -255342018 - AluSx SINE Alu -15 297 1 299 120 84 30 chr1 26851646 26851699 -255341965 - Alu SINE Alu -11 291 242 262 241 0 17 chr1 26851710 26851760 -255341904 + MIR SINE MIR 196 246 -16 2091 147 3 3 chr1 26851760 26852072 -255341592 - AluJb SINE Alu 0 312 1 511 180 0 0 chr1 26852151 26852240 -255341424 - AluSp/q SINE Alu -12 301 213 1501 151 10 62 chr1 26852348 26852499 -255341165 - AluJo SINE Alu -36 276 146 1696 146 73 7 chr1 26852499 26852773 -255340891 - AluJb SINE Alu -19 293 2 1501 151 10 62 chr1 26852773 26852912 -255340752 - AluJo SINE Alu -166 146 1 1967 144 26 7 chr1 26853341 26853647 -255340017 - AluSx SINE Alu 0 312 1 1924 121 39 16 chr1 26853788 26854093 -255339571 + AluSx SINE Alu 1 312 0 330 330 17 9 chr1 26854154 26854269 -255339395 - MIR SINE MIR -63 145 30 1847 111 57 0 chr1 26854638 26854918 -255338746 - AluSx SINE Alu -16 296 1 285 265 20 20 chr1 26854956 26855054 -255338610 - L1M4 LINE L1 -2098 4048 3951 2334 71 0 10 chr1 26855117 26855425 -255338239 - AluSc SINE Alu -4 305 1 973 257 46 7 chr1 26855430 26855733 -255337931 - L1MEc LINE L1 -4628 1768 1454 2328 73 0 16 chr1 26855734 26856047 -255337617 - AluY SINE Alu -3 308 1 628 76 0 0 chr1 26856047 26856126 -255337538 - Alu SINE Alu -11 300 222 1021 119 0 6 chr1 26856128 26856288 -255337376 + AluSg/x SINE Alu 136 294 -18 1158 155 31 10 chr1 26856288 26856482 -255337182 + MER1B DNA MER1_type 142 339 0 278 227 106 61 chr1 26856822 26856954 -255336710 + MLT1K LTR MaLR 279 416 -172 869 165 76 76 chr1 26856976 26857213 -255336451 + AluJb SINE Alu 1 237 -75 1567 255 186 54 chr1 26857418 26858201 -255335463 - L2 LINE L2 -194 3078 2102 1483 175 17 24 chr1 26858201 26858498 -255335166 + AluJo SINE Alu 1 295 -17 1567 255 186 54 chr1 26858498 26858930 -255334734 - L2 LINE L2 -1170 2102 1728 2072 120 23 0 chr1 26859354 26859654 -255334010 + AluSx SINE Alu 1 307 -5 350 326 48 20 chr1 26859958 26860105 -255333559 + L2 LINE L2 3163 3313 0 1637 134 43 0 chr1 26860231 26860485 -255333179 - AluSx SINE Alu -47 265 1 995 146 0 0 chr1 26860488 26860639 -255333025 - FRAM SINE Alu -18 158 8 722 251 99 0 chr1 26860639 26860830 -255332834 - MIR SINE MIR -38 224 15 2261 97 0 0 chr1 26860961 26861260 -255332404 + AluSg SINE Alu 1 299 -11 2236 109 0 0 chr1 26861268 26861572 -255332092 + AluSp SINE Alu 1 304 -9 1171 103 6 0 chr1 26861572 26861737 -255331927 + AluSq SINE Alu 134 299 -14 2088 140 0 0 chr1 26861825 26862133 -255331531 + AluJo SINE Alu 3 310 -2 212 299 65 65 chr1 26862150 26862304 -255331360 + L2 LINE L2 2332 2485 -829 31 0 0 0 chr1 26863063 26863094 -255330570 + AT_rich Low_complexity Low_complexity 1 31 0 874 169 36 46 chr1 26864279 26864474 -255329190 + AluJb SINE Alu 102 294 -18 548 257 95 11 chr1 26864831 26865010 -255328654 + MIR SINE MIR 52 245 -17 761 164 132 20 chr1 26865184 26865336 -255328328 - AluJb SINE Alu -4 308 140 1803 151 0 3 chr1 26865486 26865799 -255327865 - AluSx SINE Alu 0 312 1 340 75 0 38 chr1 26865799 26865852 -255327812 + MER4A LTR ERV1 308 358 -306 2096 98 19 41 chr1 26865888 26866205 -255327459 + MER4A LTR ERV1 355 664 0 347 187 133 0 chr1 26866302 26866377 -255327287 - LTR24 LTR ERV1 0 467 383 * 2019 139 18 54 chr1 26866354 26866507 -255327157 - LTR23 LTR ERV1 -62 375 218 1993 125 24 0 chr1 26866507 26866803 -255326861 + AluSx SINE Alu 1 303 -9 2023 100 17 3 chr1 26866807 26867096 -255326568 + AluSg SINE Alu 1 293 -17 2019 139 18 54 chr1 26867096 26867324 -255326340 - LTR23 LTR ERV1 -222 215 3 1300 94 0 0 chr1 26867740 26867910 -255325754 + AluSg/x SINE Alu 133 302 -10 258 237 34 0 chr1 26869359 26869418 -255324246 - MIR3 SINE MIR -10 198 138 2257 92 0 3 chr1 26869694 26869999 -255323665 - AluSx SINE Alu -8 304 1 842 121 23 0 chr1 26870000 26870132 -255323532 - AluJb SINE Alu -177 135 1 702 296 96 70 chr1 26870323 26870484 -255323180 - MLT1K LTR MaLR -129 459 304 2002 113 0 10 chr1 26870484 26870785 -255322879 - AluSx SINE Alu -14 298 1 702 296 96 70 chr1 26870785 26871069 -255322595 - MLT1K LTR MaLR -284 304 2 429 314 0 8 chr1 26872199 26872315 -255321349 - MIR SINE MIR -5 257 143 543 271 39 13 chr1 26872315 26872470 -255321194 + MER91A DNA MER1_type 1 159 -37 210 305 163 21 chr1 26872444 26872585 -255321079 - MIR SINE MIR -93 169 9 * 323 296 183 14 chr1 26872659 26872801 -255320863 + MIR3 SINE MIR 3 168 -40 248 216 128 88 chr1 26873156 26873281 -255320383 + MIR3 SINE MIR 55 184 -24 339 210 29 19 chr1 26873712 26873817 -255319847 + MIR SINE MIR 94 201 -56 454 250 27 9 chr1 26873862 26873974 -255319690 + L2 LINE L2 3190 3303 -10 1297 82 17 82 chr1 26873974 26874114 -255319550 + AluSx SINE Alu 1 122 -190 2026 86 14 3 chr1 26874114 26874404 -255319260 + AluSg SINE Alu 1 293 -17 1297 82 17 82 chr1 26874404 26874495 -255319169 + AluSx SINE Alu 122 217 -95 1422 158 27 27 chr1 26874697 26874956 -255318708 + AluJo SINE Alu 1 259 -53 1752 175 3 0 chr1 26875087 26875384 -255318280 + AluSx SINE Alu 1 298 -14 908 78 0 0 chr1 26875696 26875812 -255317852 - AluSg/x SINE Alu -64 248 133 2026 101 10 3 chr1 26875818 26876106 -255317558 - AluSg SINE Alu -20 290 1 1974 141 3 0 chr1 26876108 26876413 -255317251 - AluSx SINE Alu -5 307 2 325 305 116 42 chr1 26876419 26876825 -255316839 - MLT1L LTR MaLR -70 545 110 1116 310 56 5 chr1 26877265 26877655 -255316009 + L2 LINE L2 1912 2321 -993 1220 163 4 9 chr1 26877655 26877882 -255315782 - AluJb SINE Alu 0 312 87 761 248 87 0 chr1 26877882 26878088 -255315576 + L2 LINE L2 2309 2532 -782 295 291 60 0 chr1 26878090 26878207 -255315457 - L1M4 LINE L1 -917 5229 5106 1963 141 0 3 chr1 26878220 26878519 -255315145 + AluSx SINE Alu 1 298 -14 243 0 0 0 chr1 26878519 26878546 -255315118 + (TA)n Simple_repeat Simple_repeat 2 28 0 1077 262 78 42 chr1 26878605 26879106 -255314558 + L2 LINE L2 2556 3068 -245 1830 138 7 3 chr1 26879171 26879462 -255314202 + AluSc SINE Alu 1 292 -17 234 88 0 0 chr1 26879472 26879506 -255314158 - L1M1 LINE L1 -4701 2864 2831 2198 100 0 0 chr1 26879511 26879810 -255313854 + AluY SINE Alu 1 299 -12 274 134 23 0 chr1 26879955 26880009 -255313655 - Alu SINE Alu -249 53 11 4974 145 29 36 chr1 26880029 26880489 -255313175 - L1MB7 LINE L1 -5 6179 5717 2077 104 0 45 chr1 26880489 26880798 -255312866 + AluSx SINE Alu 1 295 -17 4974 145 29 36 chr1 26880798 26881366 -255312298 - L1MB7 LINE L1 -467 5717 5159 247 54 0 0 chr1 26881368 26881432 -255312232 - Alu SINE Alu 0 324 261 749 154 69 8 chr1 26881534 26881664 -255312000 + FRAM SINE Alu 22 159 -17 2170 108 0 0 chr1 26881667 26881963 -255311701 + AluSx SINE Alu 1 296 -16 1281 224 33 15 chr1 26881963 26882293 -255311371 - L1ME1 LINE L1 -139 6027 5692 2156 116 0 0 chr1 26882309 26882603 -255311061 - AluSx SINE Alu -16 296 3 394 297 39 28 chr1 26882784 26882966 -255310698 - MIR SINE MIR -65 197 14 2109 97 3 3 chr1 26883203 26883502 -255310162 - AluSg SINE Alu -11 299 1 247 246 58 0 chr1 26883560 26883629 -255310035 - MIR SINE MIR -83 179 107 317 281 79 50 chr1 26883629 26883868 -255309796 - MLT1L LTR MaLR -4 605 363 336 240 160 10 chr1 26883955 26884055 -255309609 - MLT1L LTR MaLR -375 240 126 874 206 0 0 chr1 26884113 26884283 -255309381 + FRAM SINE Alu 1 170 -6 2136 92 10 7 chr1 26884284 26884588 -255309076 + AluSx SINE Alu 5 309 -3 2192 68 3 20 chr1 26884591 26884887 -255308777 + AluY SINE Alu 6 296 -15 900 303 66 5 chr1 26884888 26885268 -255308396 + L1ME3A LINE L1 5549 5951 -219 1528 151 3 80 chr1 26885478 26885789 -255307875 + AluJo SINE Alu 12 298 -14 856 169 124 10 chr1 26885873 26886074 -255307590 - AluJo SINE Alu -18 294 71 1832 136 7 19 chr1 26886208 26886516 -255307148 - AluJb SINE Alu -8 304 1 322 299 160 0 chr1 26886936 26887080 -255306584 + MIR SINE MIR 89 255 -7 618 177 41 34 chr1 26887122 26887269 -255306395 + MIR3 SINE MIR 15 162 -46 2050 96 14 3 chr1 26887323 26887614 -255306050 + AluSx SINE Alu 1 294 -18 232 174 145 29 chr1 26887656 26887679 -255305985 - MER103 DNA DNA -71 95 76 923 202 56 0 chr1 26887679 26887877 -255305787 - MER3 DNA MER1_type 0 209 1 232 174 145 29 chr1 26887877 26887922 -255305742 - MER103 DNA DNA -90 76 19 216 67 0 0 chr1 26887926 26887956 -255305708 + (TG)n Simple_repeat Simple_repeat 1 30 0 1739 129 3 31 chr1 26887958 26888245 -255305419 - AluJo SINE Alu -33 279 1 1127 161 0 27 chr1 26888376 26888600 -255305064 + AluSg SINE Alu 1 218 -92 239 119 0 0 chr1 26888755 26888797 -255304867 + Alu SINE Alu 260 301 -2 892 151 0 76 chr1 26889204 26889376 -255304288 - AluJo SINE Alu -151 161 3 222 37 0 0 chr1 26889384 26889411 -255304253 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 1611 160 32 7 chr1 26889430 26889712 -255303952 - AluSq SINE Alu -20 293 5 1573 127 8 4 chr1 26890132 26890377 -255303287 - AluJb SINE Alu -25 287 42 534 211 0 8 chr1 26890382 26890505 -255303159 - L1MC4 LINE L1 -1 8041 7920 260 304 9 0 chr1 26890511 26890626 -255303038 + (TA)n Simple_repeat Simple_repeat 1 116 0 1913 115 3 33 chr1 26890627 26890931 -255302733 - AluSx SINE Alu -17 295 1 2218 106 3 0 chr1 26890938 26891250 -255302414 - AluSq SINE Alu 0 313 1 743 185 0 0 chr1 26891272 26891391 -255302273 - FLAM_A SINE Alu -14 119 1 2333 97 0 0 chr1 26891431 26891742 -255301922 - AluSx SINE Alu -1 311 1 2197 95 3 0 chr1 26891755 26892049 -255301615 - AluSx SINE Alu -17 295 1 774 279 48 17 chr1 26892359 26892649 -255301015 + L1MC4 LINE L1 7251 7549 -493 957 146 6 12 chr1 26892794 26892958 -255300706 - AluSx SINE Alu -143 169 7 908 113 0 0 chr1 26893092 26893216 -255300448 + FLAM_C SINE Alu 1 124 -19 1243 157 36 39 chr1 26893433 26893739 -255299925 - AluJb SINE Alu -2 310 6 207 238 191 19 chr1 26894511 26894616 -255299048 + L2 LINE L2 94 216 -3098 555 182 0 0 chr1 26895588 26895676 -255297988 + FRAM/FAM SINE Alu 1 87 -89 952 292 79 23 chr1 26895803 26896197 -255297467 + L2 LINE L2 2377 2792 -522 1102 230 28 50 chr1 26896197 26896514 -255297150 + MLT1A1 LTR MaLR 1 310 -55 2217 111 0 9 chr1 26896536 26896852 -255296812 - AluSp SINE Alu 0 313 1 978 168 0 5 chr1 26896852 26897042 -255296622 - L1M4 LINE L1 -978 5168 4980 1693 179 31 70 chr1 26897076 26897396 -255296268 - L1M4 LINE L1 -1153 4993 4691 2018 123 27 0 chr1 26897396 26897697 -255295967 + AluSq SINE Alu 1 309 -4 1693 179 31 70 chr1 26897697 26897789 -255295875 - L1M4 LINE L1 -1455 4691 4597 483 249 216 22 chr1 26898038 26898307 -255295357 + L2 LINE L2 2181 2501 -813 213 225 100 0 chr1 26898476 26898556 -255295108 + L2 LINE L2 3021 3108 -205 1539 181 10 16 chr1 26898556 26898860 -255294804 - AluJb SINE Alu -10 302 1 503 144 0 144 chr1 26898868 26899000 -255294664 - AluJb SINE Alu 0 312 200 333 253 152 0 chr1 26899185 26899284 -255294380 + L3 LINE CR1 1406 1519 -58 364 235 229 20 chr1 26899782 26899935 -255293729 - MIR SINE MIR -6 256 72 253 241 35 58 chr1 26900111 26900198 -255293466 - MIR SINE MIR -70 192 108 959 117 14 7 chr1 26900203 26900348 -255293316 + AluSq/x SINE Alu 1 146 -167 458 256 30 15 chr1 26900483 26900616 -255293048 - LTR37B LTR ERV1 -333 135 1 2057 132 0 0 chr1 26900711 26901014 -255292650 - AluSx SINE Alu -9 303 1 261 216 0 0 chr1 26901077 26901128 -255292536 - MIR SINE MIR -32 230 180 1526 136 0 24 chr1 26901277 26901528 -255292136 + AluSx SINE Alu 2 246 -66 216 195 24 0 chr1 26901895 26901936 -255291728 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1036 154 0 0 chr1 26902005 26902167 -255291497 - AluSg/x SINE Alu -17 293 132 1972 148 0 7 chr1 26902167 26902477 -255291187 - AluSx SINE Alu -4 308 1 1359 96 38 96 chr1 26902607 26902846 -255290818 + MER30 DNA MER1_type 6 230 0 401 232 384 0 chr1 26902849 26903013 -255290651 + MIR SINE MIR 12 238 -24 287 259 65 9 chr1 26903623 26903731 -255289933 - L1ME4a LINE L1 0 6121 6008 926 151 60 0 chr1 26903756 26903909 -255289755 - AluSg/x SINE Alu -16 296 131 2052 122 3 7 chr1 26903909 26904205 -255289459 - AluSx SINE Alu -17 295 1 926 151 60 0 chr1 26904205 26904217 -255289447 - AluSg/x SINE Alu -181 131 121 189 0 0 0 chr1 26904246 26904267 -255289397 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 26904294 26904316 -255289348 + AT_rich Low_complexity Low_complexity 1 22 0 1019 159 26 46 chr1 26905113 26905308 -255288356 + AluJb SINE Alu 1 191 -121 276 294 129 35 chr1 26906611 26906781 -255286883 - MIR SINE MIR -12 250 65 933 187 0 0 chr1 26907952 26908102 -255285562 - AluJb SINE Alu -26 286 137 526 240 129 12 chr1 26908217 26908388 -255285276 + MIR SINE MIR 48 238 -24 375 234 90 28 chr1 26908702 26908847 -255284817 - MIR3 SINE MIR -37 171 18 1079 89 7 0 chr1 26909082 26909217 -255284447 + AluSq/x SINE Alu 1 136 -177 2383 78 14 0 chr1 26909217 26909512 -255284152 + AluY SINE Alu 1 299 -12 198 71 0 0 chr1 26911912 26911940 -255281724 + (TTGG)n Simple_repeat Simple_repeat 2 29 0 1852 151 45 3 chr1 26912438 26912729 -255280935 - AluSx SINE Alu -9 303 1 258 95 0 0 chr1 26912795 26912837 -255280827 + (TTTTTA)n Simple_repeat Simple_repeat 2 43 0 467 189 11 0 chr1 26913282 26913372 -255280292 - L2 LINE L2 -2 3311 3221 201 191 0 132 chr1 26913391 26913459 -255280205 + MIR3 SINE MIR 118 176 -32 498 229 46 15 chr1 26913787 26913918 -255279746 + MIR SINE MIR 26 160 -102 2165 136 0 0 chr1 26913921 26914223 -255279441 + AluSx SINE Alu 1 302 -10 200 184 0 0 chr1 26914346 26914384 -255279280 + MIR SINE MIR 114 151 -111 457 133 27 0 chr1 26914386 26914461 -255279203 + AluS SINE Alu 3 79 -233 1125 154 6 6 chr1 26914675 26914850 -255278814 + AluJb SINE Alu 130 304 -8 775 131 0 44 chr1 26914853 26914990 -255278674 + FLAM_C SINE Alu 1 131 -2 599 208 98 6 chr1 26915125 26915298 -255278366 + MIR SINE MIR 71 259 -3 2130 104 4 4 chr1 26915490 26915770 -255277894 + AluSq SINE Alu 21 300 -13 2093 106 3 7 chr1 26915781 26916088 -255277576 + AluSq SINE Alu 1 306 0 203 321 0 0 chr1 26916211 26916264 -255277400 - MIR SINE MIR -118 90 38 180 250 0 0 chr1 26916335 26916383 -255277281 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr1 26916383 26916409 -255277255 + (TC)n Simple_repeat Simple_repeat 2 27 0 470 116 29 0 chr1 26916692 26916761 -255276903 - MLT1B LTR MaLR -296 94 24 205 326 22 0 chr1 26916856 26916945 -255276719 + MIR SINE MIR 172 262 0 2240 75 11 4 chr1 26917095 26917375 -255276289 + AluSc SINE Alu 1 282 -27 2248 134 0 0 chr1 26917394 26917701 -255275963 + AluSx SINE Alu 1 307 -5 2306 99 0 7 chr1 26917704 26918006 -255275658 + AluSx SINE Alu 1 300 -12 1643 170 7 7 chr1 26918728 26919010 -255274654 - AluJb SINE Alu -30 282 1 2389 87 6 3 chr1 26919075 26919387 -255274277 - AluSp SINE Alu 0 313 1 2203 106 0 20 chr1 26919532 26919834 -255273830 - AluSx SINE Alu -16 296 1 286 241 286 0 chr1 26919936 26920069 -255273595 - MER112 DNA MER1_type -2 258 88 252 220 275 28 chr1 26920155 26920264 -255273400 - MER5B DNA MER1_type -17 161 26 2345 68 0 0 chr1 26920591 26920869 -255272795 - AluY SINE Alu -20 291 14 2335 94 0 7 chr1 26920871 26921169 -255272495 - AluSq SINE Alu -17 296 1 1900 130 7 40 chr1 26924457 26924758 -255268906 + AluSg SINE Alu 1 291 -19 1179 207 23 23 chr1 26926984 26927240 -255266424 - AluJo SINE Alu -14 298 43 409 284 120 16 chr1 26927489 26927672 -255265992 - MIR SINE MIR -12 250 49 233 296 0 0 chr1 26928019 26928100 -255265564 + GA-rich Low_complexity Low_complexity 2 82 0 200 264 0 0 chr1 26928100 26928153 -255265511 + (CTG)n Simple_repeat Simple_repeat 3 55 0 452 194 51 0 chr1 26928315 26928413 -255265251 - L1MB8 LINE L1 -17 6161 6059 1394 50 72 0 chr1 26928533 26928713 -255264951 - L1PA4 LINE L1 -3 6152 5960 197 167 0 17 chr1 26929220 26929280 -255264384 + T-rich Low_complexity Low_complexity 2 60 0 202 29 57 0 chr1 26929565 26929600 -255264064 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 219 151 19 38 chr1 26929765 26929818 -255263846 + T-rich Low_complexity Low_complexity 5 56 0 225 94 0 0 chr1 26930207 26930239 -255263425 + (TG)n Simple_repeat Simple_repeat 1 32 0 1442 158 15 38 chr1 26930559 26930825 -255262839 + AluJo SINE Alu 2 261 -51 294 286 227 31 chr1 26930986 26931035 -255262629 + L2 LINE L2 1841 1879 -1435 2808 19 0 0 chr1 26931035 26931342 -255262322 + AluYa5 SINE Alu 1 307 -4 294 286 227 31 chr1 26931342 26931680 -255261984 + L2 LINE L2 1879 2304 -1010 959 158 19 0 chr1 26931686 26931844 -255261820 - AluSc SINE Alu -10 299 139 2476 54 24 0 chr1 26931859 26932155 -255261509 - AluY SINE Alu -8 303 1 1766 139 3 58 chr1 26932546 26932856 -255260808 + AluSq SINE Alu 1 293 -20 256 295 0 0 chr1 26932864 26932942 -255260722 + MIR SINE MIR 180 257 -5 358 211 56 0 chr1 26932956 26933046 -255260618 - L2 LINE L2 -8 3264 3170 1210 176 64 78 chr1 26933159 26933454 -255260210 + AluJo SINE Alu 1 291 -11 2001 131 3 7 chr1 26933462 26933760 -255259904 + AluSx SINE Alu 3 299 -13 441 254 36 0 chr1 26933883 26933993 -255259671 - MIR SINE MIR -112 150 37 317 269 8 8 chr1 26934071 26934190 -255259474 - MIR SINE MIR -79 183 65 1616 196 171 17 chr1 26934436 26934845 -255258819 + MLT1F LTR MaLR 63 534 -8 2228 110 0 7 chr1 26935396 26935704 -255257960 - AluSx SINE Alu -6 306 1 1823 112 8 0 chr1 26985864 26986115 -255207549 + AluSx SINE Alu 59 311 -1 282 306 74 19 chr1 26986390 26986498 -255207166 + MIR SINE MIR 37 150 -58 529 188 107 0 chr1 26986580 26986692 -255206972 + FLAM_C SINE Alu 2 125 -8 1204 133 12 0 chr1 26986712 26986878 -255206786 + AluSx SINE Alu 1 168 -144 1069 177 69 0 chr1 26986885 26986917 -255206747 + AluJo SINE Alu 85 113 -199 234 0 0 0 chr1 26986917 26986943 -255206721 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1069 177 69 0 chr1 26986943 26987113 -255206551 + AluJo SINE Alu 113 301 -11 21 0 0 0 chr1 26987131 26987152 -255206512 + AT_rich Low_complexity Low_complexity 1 21 0 403 282 15 23 chr1 26987476 26987607 -255206057 - MIR SINE MIR -100 162 33 506 286 35 12 chr1 26987751 26987922 -255205742 + MIR SINE MIR 21 195 -67 463 307 42 16 chr1 26987961 26988150 -255205514 - L2 LINE L2 0 3313 3120 313 242 50 3 chr1 26988940 26989039 -255204625 + MIR SINE MIR 43 140 -68 1850 109 64 8 chr1 26989787 26990080 -255203584 + AluSg SINE Alu 1 308 0 443 280 118 14 chr1 26990133 26990344 -255203320 + L1MC4 LINE L1 7752 7984 -58 2124 149 0 0 chr1 26990346 26990654 -255203010 - AluSx SINE Alu -4 308 1 949 104 80 0 chr1 26990654 26990779 -255202885 - AluSq/x SINE Alu -177 135 1 2266 127 3 0 chr1 26991218 26991526 -255202138 - AluSx SINE Alu -3 309 1 481 317 6 6 chr1 26991761 26991928 -255201736 + MIR3 SINE MIR 17 183 -25 1075 223 110 18 chr1 26992278 26992668 -255200996 - LTR33A LTR ERVL -8 515 90 564 264 106 14 chr1 26993228 26993436 -255200228 - MIR SINE MIR -22 240 14 209 269 226 11 chr1 26993853 26993946 -255199718 - MIR SINE MIR -51 211 99 517 230 94 32 chr1 26994031 26994197 -255199467 - MIR SINE MIR -40 168 24 424 250 60 32 chr1 26994242 26994458 -255199206 - HsTC2 DNA Tc2 0 1898 1677 307 162 29 29 chr1 26994459 26994527 -255199137 - L1MCa LINE L1 -4361 2065 1998 * 329 356 9 9 chr1 26994497 26994612 -255199052 + L1MC4 LINE L1 6614 6728 -1314 2124 136 10 0 chr1 26994698 26994999 -255198665 + AluSx SINE Alu 3 306 -6 289 212 182 0 chr1 26995197 26995263 -255198401 - MER63 DNA MER1_type -5 1057 980 1856 132 44 30 chr1 26995289 26995585 -255198079 + AluJo SINE Alu 1 300 -12 422 151 108 32 chr1 26995602 26995695 -255197969 - MER63 DNA MER1_type -336 726 1 1055 223 48 4 chr1 26995791 26996020 -255197644 - HsTC2 DNA Tc2 -362 1536 1298 312 235 0 35 chr1 26996071 26996156 -255197508 - HsTC2 DNA Tc2 -1816 82 1 2394 105 3 0 chr1 26996606 26996910 -255196754 - AluSx SINE Alu -7 305 1 231 268 197 0 chr1 26996919 26996990 -255196674 + L2 LINE L2 3186 3270 -2 375 105 0 0 chr1 26997241 26997298 -255196366 + (CGGGG)n Simple_repeat Simple_repeat 2 58 0 337 310 13 44 chr1 26997570 26997728 -255195936 + MIR SINE MIR 34 186 -76 535 165 18 37 chr1 26997791 26997900 -255195764 + MER5A DNA MER1_type 2 108 -81 2238 116 3 3 chr1 26997902 26998212 -255195452 - AluSx SINE Alu -2 310 1 1680 154 57 6 chr1 26998231 26998549 -255195115 - L1MB7 LINE L1 -24 6160 5827 22 70 0 0 chr1 26998592 26998635 -255195029 + AT_rich Low_complexity Low_complexity 1 43 0 2262 154 8 3 chr1 26998646 26999036 -255194628 - L1MC1 LINE L1 -17 6316 5925 1525 208 54 44 chr1 26999038 26999334 -255194330 - MSTD LTR MaLR -2 394 92 1968 176 3 0 chr1 26999334 26999640 -255194024 - AluJo SINE Alu -5 307 1 1525 208 54 44 chr1 26999640 26999733 -255193931 - MSTD LTR MaLR -304 92 1 7033 216 55 32 chr1 26999733 27001427 -255192237 - MSTD-int LTR MaLR 0 1735 2 280 98 0 0 chr1 27001427 27001465 -255192199 - MSTD LTR MaLR -15 381 344 222 156 62 0 chr1 27001465 27001529 -255192135 + (TA)n Simple_repeat Simple_repeat 1 68 0 1262 227 62 10 chr1 27001542 27001850 -255191814 - MSTD LTR MaLR -72 324 1 9339 198 26 31 chr1 27001850 27005078 -255188586 - L1MC1 LINE L1 -404 5929 2722 590 126 0 0 chr1 27005081 27005184 -255188480 - L1MB7 LINE L1 -358 5826 5724 2984 169 43 54 chr1 27005186 27006169 -255187495 - L1MB5 LINE L1 -34 6140 5215 2030 149 0 0 chr1 27006194 27006502 -255187162 - AluJb SINE Alu -4 308 1 1370 158 0 29 chr1 27006505 27006746 -255186918 - AluJo SINE Alu 0 312 79 1774 122 59 24 chr1 27006751 27007039 -255186625 - AluSq SINE Alu -13 300 3 2078 187 59 7 chr1 27007802 27008224 -255185440 - MLT1C LTR MaLR 0 467 24 498 136 0 0 chr1 27008415 27008496 -255185168 + (CA)n Simple_repeat Simple_repeat 2 82 0 2171 115 3 6 chr1 27008561 27008875 -255184789 + AluSq SINE Alu 1 313 0 621 279 164 4 chr1 27008891 27009117 -255184547 + LTR16A1 LTR ERVL 196 457 0 189 289 0 0 chr1 27009287 27009339 -255184325 + L2 LINE L2 3019 3070 -243 1635 307 82 35 chr1 27009457 27009658 -255184006 - ERVL LTR ERVL -2071 3693 3503 3452 77 11 17 chr1 27009658 27010171 -255183493 - L1PA10 LINE L1 0 6168 5707 1635 307 82 35 chr1 27010171 27010618 -255183046 - ERVL LTR ERVL -2261 3503 3015 1054 228 167 34 chr1 27010631 27011009 -255182655 - MLT1D LTR MaLR -47 458 31 491 306 14 57 chr1 27011042 27011202 -255182462 - ERVL LTR ERVL -2039 2957 2805 2055 110 0 0 chr1 27011202 27011503 -255182161 - AluSx SINE Alu 0 301 1 491 306 14 57 chr1 27011503 27011550 -255182114 - ERVL LTR ERVL -2191 2805 2758 996 249 109 28 chr1 27011688 27012045 -255181619 + LTR16A1 LTR ERVL 70 455 -2 2227 100 68 31 chr1 27012056 27012407 -255181257 - THE1B LTR MaLR 0 364 1 8976 91 30 32 chr1 27012407 27013731 -255179933 - THE1B-int LTR MaLR 0 1580 260 508 111 0 0 chr1 27013731 27013803 -255179861 + THE1B LTR MaLR 224 295 -69 586 328 54 4 chr1 27013805 27014046 -255179618 - ERVL LTR ERVL -2327 2669 2417 753 294 74 11 chr1 27014047 27014316 -255179348 + L2 LINE L2 3027 3312 -1 225 0 0 0 chr1 27014692 27014717 -255178947 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2119 110 0 0 chr1 27015507 27015809 -255177855 - AluSx SINE Alu 0 302 1 386 217 130 17 chr1 27015809 27015924 -255177740 + MIR SINE MIR 114 241 -21 192 40 0 0 chr1 27015927 27015952 -255177712 + (TTA)n Simple_repeat Simple_repeat 2 26 0 246 273 52 13 chr1 27015965 27016042 -255177622 - L2 LINE L2 -193 3079 3000 292 282 35 53 chr1 27016232 27016459 -255177205 + L1ME4a LINE L1 5895 6117 -4 1450 160 94 14 chr1 27016470 27016745 -255176919 + AluJo SINE Alu 3 299 -13 235 259 56 83 chr1 27019871 27019979 -255173685 + MIR3 SINE MIR 50 154 -54 261 75 0 0 chr1 27021926 27021966 -255171698 + (T)n Simple_repeat Simple_repeat 1 40 0 343 263 111 47 chr1 27024475 27024646 -255169018 - MIR3 SINE MIR -2 206 25 632 271 152 0 chr1 27024673 27024883 -255168781 + MIR SINE MIR 2 243 -19 543 235 39 20 chr1 27026145 27026298 -255167366 - MIR SINE MIR -85 177 22 188 261 0 0 chr1 27027438 27027484 -255166180 - L2 LINE L2 -4 3268 3223 1524 153 10 67 chr1 27029278 27029591 -255164073 + AluJo SINE Alu 1 295 -17 233 143 0 0 chr1 27030381 27030416 -255163248 + MIR SINE MIR 119 153 -109 213 346 10 50 chr1 27030801 27030902 -255162762 - MIR SINE MIR -61 147 51 2321 78 3 13 chr1 27030917 27031223 -255162441 + AluSx SINE Alu 1 303 -9 372 294 144 0 chr1 27031786 27031946 -255161718 - MER102a DNA MER1_type -2 328 146 268 365 79 0 chr1 27032105 27032231 -255161433 + L3 LINE CR1 878 1013 -564 241 348 84 7 chr1 27033510 27033665 -255159999 - MIR SINE MIR -15 247 81 250 233 16 5 chr1 27033961 27034045 -255159619 + MIR SINE MIR 96 143 -65 288 241 36 24 chr1 27034273 27034356 -255159308 + MIR SINE MIR 63 146 -62 285 303 169 17 chr1 27034814 27034992 -255158672 - MIR SINE MIR -14 248 44 367 260 136 12 chr1 27035769 27035938 -255157726 + L2 LINE L2 2990 3179 -134 * 663 292 67 68 chr1 27035924 27036055 -255157609 - L2 LINE L2 0 3313 3183 2291 96 0 0 chr1 27036055 27036358 -255157306 + AluSx SINE Alu 1 303 -9 663 292 67 68 chr1 27036358 27036722 -255156942 - L2 LINE L2 -130 3183 2819 200 238 48 0 chr1 27036800 27036863 -255156801 + MER5A DNA MER1_type 120 185 -4 247 317 24 0 chr1 27037194 27037276 -255156388 - MIR SINE MIR -68 194 111 241 242 121 11 chr1 27037477 27037568 -255156096 - MIR SINE MIR -60 148 48 349 227 52 58 chr1 27038429 27038584 -255155080 - MIR3 SINE MIR -65 143 8 * 467 281 52 0 chr1 27038556 27038691 -255154973 - MIR SINE MIR -48 214 73 247 270 45 11 chr1 27038758 27038847 -255154817 - MIR3 SINE MIR -36 172 81 330 91 0 0 chr1 27039479 27039534 -255154130 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 843 286 70 22 chr1 27040594 27040965 -255152699 - L1ME4a LINE L1 -12 6109 5721 353 265 0 0 chr1 27041136 27041234 -255152430 - L1ME4a LINE L1 -392 5729 5632 232 217 167 0 chr1 27042795 27042855 -255150809 + L2 LINE L2 3003 3072 -241 1167 131 16 0 chr1 27042858 27043041 -255150623 - AluJ SINE Alu -6 306 121 257 92 31 46 chr1 27043042 27043107 -255150557 + CT-rich Low_complexity Low_complexity 3 66 0 781 152 48 0 chr1 27043107 27043232 -255150432 - AluJ SINE Alu -169 133 3 1978 179 68 19 chr1 27043233 27043702 -255149962 + Charlie4a DNA MER1_type 2 493 -15 496 292 58 6 chr1 27043795 27043966 -255149698 + L2 LINE L2 3133 3312 -1 905 253 150 38 chr1 27044961 27044998 -255148666 + MER20B DNA MER1_type 213 244 -539 1679 143 53 33 chr1 27044998 27045298 -255148366 + AluJb SINE Alu 1 306 -6 905 253 150 38 chr1 27045298 27045767 -255147897 + MER20B DNA MER1_type 244 776 -7 194 241 0 35 chr1 27046254 27046312 -255147352 - MIR3 SINE MIR -1 207 152 930 244 57 0 chr1 27046331 27046560 -255147104 - MIR SINE MIR -3 259 18 21 57 0 0 chr1 27050631 27050666 -255142998 + GC_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr1 27050827 27050854 -255142810 + GC_rich Low_complexity Low_complexity 1 27 0 23 68 0 0 chr1 27050893 27050937 -255142727 + GC_rich Low_complexity Low_complexity 1 44 0 28 111 0 0 chr1 27051018 27051144 -255142520 + GC_rich Low_complexity Low_complexity 1 126 0 27 0 0 0 chr1 27051187 27051214 -255142450 + GC_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 27051220 27051244 -255142420 + GC_rich Low_complexity Low_complexity 1 24 0 402 221 213 8 chr1 27054172 27054299 -255139365 + MIR SINE MIR 90 242 -20 190 184 0 0 chr1 27054904 27054942 -255138722 + MIR SINE MIR 109 146 -62 187 270 264 20 chr1 27055470 27055618 -255138046 - MIR SINE MIR -19 243 60 269 278 19 37 chr1 27055899 27056007 -255137657 - MIR SINE MIR -70 192 87 233 273 39 26 chr1 27056727 27056804 -255136860 - MIR SINE MIR -92 170 93 715 298 19 9 chr1 27057107 27057322 -255136342 - MIR SINE MIR -43 219 3 416 248 62 16 chr1 27057405 27057534 -255136130 - MIR3 SINE MIR -8 200 66 979 193 11 0 chr1 27058114 27058290 -255135374 + MER45A DNA AcHobo 1 178 0 236 243 225 18 chr1 27058439 27058550 -255135114 - MIR SINE MIR -127 135 2 392 289 8 23 chr1 27059097 27059225 -255134439 + MIR3 SINE MIR 78 203 -5 319 301 21 4 chr1 27059238 27059382 -255134282 - MIR3 SINE MIR -58 150 14 1386 199 60 71 chr1 27059525 27059892 -255133772 + MLT1A1 LTR MaLR 3 365 0 216 290 0 28 chr1 27060111 27060218 -255133446 + (CA)n Simple_repeat Simple_repeat 1 104 0 441 297 55 11 chr1 27060902 27061084 -255132580 + L3 LINE CR1 1145 1334 -243 304 218 163 60 chr1 27061253 27061402 -255132262 + MIR SINE MIR 21 182 -26 720 199 0 22 chr1 27061526 27061662 -255132002 + FLAM_A SINE Alu 1 133 0 460 279 25 32 chr1 27062346 27062504 -255131160 - MIR SINE MIR -74 188 32 610 248 60 85 chr1 27063157 27063488 -255130176 - L2 LINE L2 0 3313 2991 561 260 62 0 chr1 27064294 27064471 -255129193 - MIR SINE MIR -3 259 72 247 304 14 0 chr1 27064752 27064821 -255128843 - L3b LINE CR1 -198 1385 1316 966 249 151 37 chr1 27065118 27065349 -255128315 + L2 LINE L2 2804 3007 -306 2304 176 13 71 chr1 27065349 27065883 -255127781 + MLT1D LTR MaLR 1 503 -2 966 249 151 37 chr1 27065883 27066034 -255127630 + L2 LINE L2 3007 3139 -174 672 185 154 6 chr1 27066034 27066196 -255127468 + MER53 DNA DNA 1 186 -3 966 249 151 37 chr1 27066196 27066269 -255127395 + L2 LINE L2 3139 3312 -1 749 239 80 5 chr1 27066364 27066565 -255127099 - MIR SINE MIR -1 261 46 411 98 0 0 chr1 27066958 27067019 -255126645 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 200 239 0 0 chr1 27067029 27067075 -255126589 + MIR SINE MIR 108 153 -109 524 219 92 0 chr1 27067110 27067274 -255126390 - L1ME4a LINE L1 -1 6120 5942 226 316 176 7 chr1 27067514 27067650 -255126014 - L1ME4a LINE L1 -359 5762 5604 224 263 40 53 chr1 27068009 27068085 -255125579 - MIR SINE MIR -79 183 109 181 304 65 0 chr1 27068859 27068951 -255124713 + MIR3 SINE MIR 86 183 -25 508 234 133 6 chr1 27070072 27070230 -255123434 - MIR SINE MIR -48 214 37 233 291 18 73 chr1 27070309 27070419 -255123245 - L2 LINE L2 0 3272 3169 900 223 165 5 chr1 27071010 27071234 -255122430 - MER45C DNA AcHobo 0 953 694 706 202 93 26 chr1 27071274 27071467 -255122197 - MER45C DNA AcHobo -685 268 63 2206 110 0 0 chr1 27071839 27072140 -255121524 + AluSc SINE Alu 1 301 -8 248 235 148 3 chr1 27072380 27072464 -255121200 - MIR SINE MIR -63 145 61 509 224 35 0 chr1 27072674 27072790 -255120874 + MIR SINE MIR 77 196 -66 528 206 9 0 chr1 27072795 27072902 -255120762 + AluJb SINE Alu 195 302 -10 192 250 16 16 chr1 27072902 27072966 -255120698 + MIR SINE MIR 189 252 -10 369 206 20 20 chr1 27073304 27073406 -255120258 - MER103 DNA DNA -61 105 4 524 279 117 11 chr1 27073595 27073774 -255119890 - MIR SINE MIR -43 219 22 183 154 0 0 chr1 27073984 27073998 -255119666 + A-rich Low_complexity Low_complexity 1 14 -25 2362 65 7 0 chr1 27073998 27074307 -255119357 + AluY SINE Alu 1 311 0 183 154 0 0 chr1 27074307 27074331 -255119333 + A-rich Low_complexity Low_complexity 13 39 0 825 227 61 9 chr1 27074341 27074558 -255119106 - MER3 DNA MER1_type -84 125 1 1136 165 110 28 chr1 27074594 27074812 -255118852 + MER46A DNA MER2_type 1 236 0 958 161 0 0 chr1 27074832 27074987 -255118677 - FRAM SINE Alu -18 158 4 300 171 49 37 chr1 27075085 27075167 -255118497 + L1ME4a LINE L1 5966 6048 -73 857 195 0 0 chr1 27075383 27075532 -255118132 + MER45A DNA AcHobo 24 172 -6 225 333 100 0 chr1 27076318 27076438 -255117226 + MIR SINE MIR 95 226 -36 268 269 21 21 chr1 27076568 27076661 -255117003 + MIR3 SINE MIR 63 155 -53 537 223 16 16 chr1 27076715 27076836 -255116828 + L2 LINE L2 3189 3309 -4 199 238 0 0 chr1 27076937 27076979 -255116685 - L2 LINE L2 -13 3259 3218 316 200 33 50 chr1 27077235 27077355 -255116309 - L1ME4a LINE L1 -40 6081 5964 225 301 21 11 chr1 27078220 27078237 -255115427 + LTR3b LTR ERVK 231 246 -191 456 67 0 0 chr1 27078237 27078297 -255115367 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 225 301 21 11 chr1 27078297 27078372 -255115292 + LTR3b LTR ERVK 246 324 -113 713 265 20 5 chr1 27078586 27078786 -255114878 - MIR SINE MIR 0 262 60 454 233 77 2 chr1 27079096 27079245 -255114419 - MIR SINE MIR -37 171 27 266 216 176 0 chr1 27079326 27079400 -255114264 + MIR3 SINE MIR 107 193 -15 226 146 42 21 chr1 27079576 27079624 -255114040 + CT-rich Low_complexity Low_complexity 1 49 0 449 183 24 0 chr1 27080455 27080537 -255113127 + MER81 DNA DNA 2 85 -29 403 318 101 62 chr1 27080809 27081164 -255112500 + L2 LINE L2 2886 3254 -18 541 275 203 0 chr1 27081167 27081374 -255112290 - MIR SINE MIR -10 252 4 310 197 15 0 chr1 27081694 27081760 -255111904 - MIR SINE MIR -60 148 82 231 333 0 46 chr1 27082371 27082479 -255111185 - MIR3 SINE MIR -40 168 66 330 300 10 18 chr1 27082505 27082630 -255111034 - MER5A DNA MER1_type 0 178 59 648 287 125 53 chr1 27082873 27083305 -255110359 + Charlie4a DNA MER1_type 13 475 -33 342 222 0 50 chr1 27084467 27084566 -255109098 - MIR SINE MIR -140 122 29 1504 146 0 80 chr1 27085669 27085971 -255107693 - AluSx SINE Alu -34 278 1 1752 231 5 39 chr1 27085971 27086155 -255107509 + L1PA15-16 LINE L1 2589 2778 -4806 1555 178 39 3 chr1 27086155 27086441 -255107223 + AluJb SINE Alu 1 296 -16 1752 231 5 39 chr1 27086441 27086853 -255106811 + L1PA15-16 LINE L1 2778 3172 -4412 356 101 29 0 chr1 27086853 27086922 -255106742 + AluSp/q SINE Alu 232 302 -1 329 132 0 0 chr1 27086923 27086976 -255106688 + L1PA15-16 LINE L1 3289 3341 -4243 23 0 0 0 chr1 27087077 27087100 -255106564 + AT_rich Low_complexity Low_complexity 1 23 0 48 18 0 0 chr1 27087339 27087394 -255106270 + AT_rich Low_complexity Low_complexity 1 55 0 811 160 100 0 chr1 27089358 27089508 -255104156 + L1PB4 LINE L1 5965 6129 -27 620 336 19 8 chr1 27089611 27089870 -255103794 - HERVL LTR ERVL -2282 3372 3111 649 168 136 77 chr1 27089872 27089955 -255103709 + ORSL DNA AcHobo 2 79 -196 2062 108 17 0 chr1 27089955 27090252 -255103412 + AluSx SINE Alu 1 302 -10 649 168 136 77 chr1 27090252 27090388 -255103276 + ORSL DNA AcHobo 79 234 -41 1011 336 0 4 chr1 27090439 27090710 -255102954 - HERVL LTR ERVL -1905 3091 2822 1664 114 0 0 chr1 27090735 27090963 -255102701 - AluSx SINE Alu -83 229 2 261 241 0 0 chr1 27090977 27091031 -255102633 - Looper DNA T2_type -1 1557 1504 1524 101 5 0 chr1 27091035 27091252 -255102412 - AluY SINE Alu -2 309 92 216 160 50 34 chr1 27091388 27091507 -255102157 + (TATAA)n Simple_repeat Simple_repeat 4 124 0 289 253 32 43 chr1 27091530 27091858 -255101806 + (TATAA)n Simple_repeat Simple_repeat 1 324 0 * 324 118 106 10 chr1 27091739 27092053 -255101611 + (TA)n Simple_repeat Simple_repeat 1 344 0 205 171 0 71 chr1 27092061 27092131 -255101533 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 290 262 135 16 chr1 27092809 27092935 -255100729 - MIR3 SINE MIR -58 150 10 642 297 86 5 chr1 27093276 27093485 -255100179 + MIR SINE MIR 20 245 -17 21 0 0 0 chr1 27093626 27093647 -255100017 + AT_rich Low_complexity Low_complexity 1 21 0 1767 185 0 10 chr1 27093764 27094078 -255099586 - AluJo SINE Alu 0 312 2 961 272 152 5 chr1 27094302 27094670 -255098994 - LTR33A LTR ERVL -3 520 99 464 232 0 24 chr1 27094973 27095224 -255098440 + (CA)n Simple_repeat Simple_repeat 1 245 0 224 314 83 33 chr1 27095288 27095409 -255098255 - MIR SINE MIR -88 174 48 285 270 0 0 chr1 27096182 27096256 -255097408 + MIR SINE MIR 49 122 -86 2122 88 7 14 chr1 27096770 27097064 -255096600 - AluSx SINE Alu -20 292 1 1990 139 0 7 chr1 27097064 27097365 -255096299 - AluSx SINE Alu -13 299 1 750 316 60 32 chr1 27097458 27097894 -255095770 + MLT1J2 LTR MaLR 1 448 -2 1847 162 31 36 chr1 27098043 27098433 -255095231 + Looper DNA T2_type 35 424 -1134 1877 179 0 3 chr1 27098433 27098746 -255094918 - AluJb SINE Alu 0 312 1 1847 162 31 36 chr1 27098746 27098774 -255094890 + Looper DNA T2_type 424 451 -1107 194 174 22 0 chr1 27100158 27100204 -255093460 + GA-rich Low_complexity Low_complexity 2 48 0 213 222 0 0 chr1 27100773 27100827 -255092837 + L2 LINE L2 2917 2970 -302 250 300 75 17 chr1 27100991 27101111 -255092553 - MIR3 SINE MIR -52 156 30 439 262 24 16 chr1 27101519 27101645 -255092019 + MIR SINE MIR 25 151 -111 598 304 41 23 chr1 27101795 27102181 -255091483 + L2 LINE L2 2694 3084 -229 755 256 32 36 chr1 27102348 27102519 -255091145 - MIR SINE MIR -2 260 89 2216 123 0 29 chr1 27102519 27102828 -255090836 - AluSx SINE Alu -12 300 1 755 256 32 36 chr1 27102828 27102875 -255090789 - MIR SINE MIR -173 89 43 261 0 0 0 chr1 27102989 27103018 -255090646 + (CA)n Simple_repeat Simple_repeat 2 30 0 485 296 33 33 chr1 27103322 27103535 -255090129 + MIR SINE MIR 48 260 -2 208 329 27 0 chr1 27104452 27104524 -255089140 + MIR SINE MIR 34 107 -155 548 273 96 0 chr1 27104524 27104750 -255088914 + MIR SINE MIR 1 249 -13 1924 151 27 0 chr1 27105351 27105650 -255088014 + AluJb SINE Alu 3 309 -3 207 0 0 0 chr1 27105669 27105692 -255087972 + (GGGAA)n Simple_repeat Simple_repeat 2 24 0 695 217 36 24 chr1 27105960 27106126 -255087538 - MLT1H LTR MaLR 0 549 382 583 256 18 24 chr1 27106280 27106448 -255087216 - MLT1H LTR MaLR -375 174 8 2501 179 37 10 chr1 27106478 27106970 -255086694 + MLT1D LTR MaLR 1 505 0 2302 95 3 3 chr1 27107744 27108038 -255085626 + AluSq SINE Alu 11 304 -9 538 248 39 33 chr1 27108128 27108281 -255085383 - MIR3 SINE MIR -21 187 34 257 284 21 21 chr1 27108304 27108399 -255085265 + GA-rich Low_complexity Low_complexity 2 96 0 490 128 0 0 chr1 27108428 27108506 -255085158 - AluS SINE Alu -229 84 7 418 186 12 23 chr1 27108783 27108869 -255084795 + MIR3 SINE MIR 78 162 -46 2372 102 0 0 chr1 27108962 27109256 -255084408 + AluSx SINE Alu 1 294 -18 359 291 31 39 chr1 27109982 27110109 -255083555 - L2 LINE L2 0 3272 3147 2498 65 0 0 chr1 27110268 27110561 -255083103 - AluSx SINE Alu -19 293 1 22 0 0 0 chr1 27111115 27111137 -255082527 + AT_rich Low_complexity Low_complexity 1 22 0 247 191 0 107 chr1 27111330 27111414 -255082250 + MLT1K LTR MaLR 514 588 0 505 283 64 41 chr1 27111446 27111883 -255081781 - MLT1L LTR MaLR -3 612 58 471 155 0 0 chr1 27112601 27112685 -255080979 + CT-rich Low_complexity Low_complexity 3 86 0 2264 95 19 32 chr1 27112788 27113104 -255080560 - AluSx SINE Alu 0 312 1 1459 138 4 36 chr1 27113128 27113353 -255080311 - AluJo SINE Alu -94 218 1 416 293 132 0 chr1 27113363 27113537 -255080127 + HERVL LTR ERVL 3565 3761 -1893 607 225 6 77 chr1 27113694 27113825 -255079839 - MIR SINE MIR -69 193 75 2285 77 24 10 chr1 27113825 27113959 -255079705 + AluSg SINE Alu 1 132 -178 2189 86 31 14 chr1 27113959 27114251 -255079413 + AluSg SINE Alu 1 297 -13 2285 77 24 10 chr1 27114251 27114414 -255079250 + AluSg SINE Alu 132 302 -8 607 225 6 77 chr1 27114414 27114451 -255079213 - MIR SINE MIR -187 75 37 543 281 135 0 chr1 27115493 27115685 -255077979 - MIR SINE MIR -14 248 31 2358 112 0 3 chr1 27115836 27116149 -255077515 + AluSx SINE Alu 1 312 0 757 245 97 0 chr1 27117020 27117236 -255076428 - MIR SINE MIR -14 248 12 2305 117 0 0 chr1 27117295 27117595 -255076069 - AluSx SINE Alu -7 305 6 760 227 61 103 chr1 27117747 27118205 -255075459 - MLT1H1 LTR MaLR -2 553 115 617 240 62 17 chr1 27118563 27118742 -255074922 - MIR SINE MIR 0 262 76 1695 62 0 0 chr1 27118977 27119203 -255074461 - L1P LINE L1 -4778 1368 1143 2945 41 0 0 chr1 27119203 27119571 -255074093 + L1PA4 LINE L1 5787 6154 -1 255 277 0 85 chr1 27119635 27119729 -255073935 - MIR SINE MIR -164 98 13 567 268 20 13 chr1 27120069 27120222 -255073442 - MLT1I LTR MaLR -197 212 59 390 309 174 41 chr1 27120399 27120761 -255072903 + L2 LINE L2 2903 3312 -1 186 303 79 0 chr1 27121028 27121104 -255072560 - MIR SINE MIR -89 173 92 1304 249 113 19 chr1 27121229 27121691 -255071973 + MLT1D LTR MaLR 1 505 0 319 313 53 20 chr1 27121984 27122134 -255071530 - MIR3 SINE MIR -26 182 28 329 233 138 35 chr1 27122313 27122429 -255071235 + MIR3 SINE MIR 58 185 -23 381 250 153 14 chr1 27123924 27124068 -255069596 - MER103 DNA DNA -1 165 2 292 215 65 47 chr1 27124275 27124382 -255069282 - MLT1H1 LTR MaLR -442 153 45 708 257 230 20 chr1 27124990 27125472 -255068192 + MLT1G1 LTR MaLR 2 533 -9 942 169 36 0 chr1 27125722 27125917 -255067747 + L1MC3 LINE L1 7574 7775 -10 364 239 71 77 chr1 27126027 27126182 -255067482 - MIR3 SINE MIR -39 169 16 398 260 86 10 chr1 27126187 27126378 -255067286 + MIR3 SINE MIR 11 212 -50 445 264 44 6 chr1 27126731 27126890 -255066774 + LTR33 LTR ERVL 1 165 -356 279 227 109 25 chr1 27126910 27127029 -255066635 - MIR3 SINE MIR -10 198 70 727 260 73 10 chr1 27127314 27127518 -255066146 + MIR SINE MIR 30 246 -16 259 337 12 0 chr1 27127881 27127964 -255065700 - L2 LINE L2 -3 3310 3227 720 268 141 14 chr1 27128164 27128518 -255065146 - L2 LINE L2 0 3313 2915 203 347 32 0 chr1 27129023 27129118 -255064546 + MIR SINE MIR 36 133 -75 25 0 0 0 chr1 27129744 27129769 -255063895 + GC_rich Low_complexity Low_complexity 1 25 0 438 204 63 56 chr1 27130286 27130428 -255063236 + MIR3 SINE MIR 3 145 -63 299 287 21 11 chr1 27130485 27130579 -255063085 - MIR3 SINE MIR -26 182 88 475 303 0 0 chr1 27130866 27130988 -255062676 - MIR3 SINE MIR -5 203 82 2292 104 7 7 chr1 27131639 27131948 -255061716 - AluSg SINE Alu -1 309 1 281 298 12 12 chr1 27132505 27132589 -255061075 - MER5A DNA MER1_type -32 157 74 1364 183 0 0 chr1 27132871 27133084 -255060580 + AluSg/x SINE Alu 85 297 -15 907 278 66 66 chr1 27133527 27133994 -255059670 - MLT1J LTR MaLR 0 511 45 342 301 24 24 chr1 27134019 27134142 -255059522 - L3 LINE CR1 -193 1384 1262 362 236 31 8 chr1 27134402 27134529 -255059135 - L2 LINE L2 -217 3055 2926 429 198 0 12 chr1 27135853 27135934 -255057730 + MER20 DNA MER1_type 1 80 -139 946 243 19 50 chr1 27136163 27136384 -255057280 + L1ME LINE L1 529 755 -5328 1905 152 0 14 chr1 27136384 27136701 -255056963 + AluSq SINE Alu 1 313 0 946 243 19 50 chr1 27136701 27136970 -255056694 + L1ME LINE L1 755 1090 -4993 369 0 0 0 chr1 27137474 27137515 -255056149 + (CA)n Simple_repeat Simple_repeat 2 42 0 804 185 60 38 chr1 27139000 27139184 -255054480 - MER5A DNA MER1_type 0 189 2 2207 126 0 0 chr1 27139269 27139563 -255054101 + AluSx SINE Alu 5 298 -14 358 234 9 36 chr1 27140398 27140509 -255053155 - MER117 DNA MER1_type -33 164 57 32 26 0 0 chr1 27140545 27140584 -255053080 + AT_rich Low_complexity Low_complexity 1 39 0 329 312 96 8 chr1 27141077 27141202 -255052462 - MIR3 SINE MIR -49 159 24 2221 121 0 0 chr1 27141246 27141535 -255052129 + AluSg SINE Alu 1 289 -21 456 276 167 9 chr1 27141702 27141923 -255051741 + L2 LINE L2 2804 3059 -254 232 241 101 13 chr1 27141955 27142034 -255051630 + L2 LINE L2 3228 3313 0 252 183 118 65 chr1 27142077 27142170 -255051494 + MIR SINE MIR 35 132 -76 279 93 0 0 chr1 27143210 27143253 -255050411 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 128 0 0 chr1 27143594 27143633 -255050031 - Alu SINE Alu -6 294 256 332 306 28 0 chr1 27143699 27143807 -255049857 - MER115 DNA AcHobo -318 375 265 1711 98 0 0 chr1 27144520 27144735 -255048929 + AluY SINE Alu 1 215 -96 1523 255 83 43 chr1 27144928 27145432 -255048232 - L1M4 LINE L1 -1336 4810 4327 2244 104 17 0 chr1 27145432 27145721 -255047943 - AluSp SINE Alu -19 294 1 1523 255 83 43 chr1 27145721 27145824 -255047840 - L1M4 LINE L1 -1819 4327 4230 690 181 0 30 chr1 27145824 27145957 -255047707 - FLAM_C SINE Alu -4 129 1 1523 255 83 43 chr1 27145957 27146317 -255047347 - L1M4 LINE L1 -1916 4230 3804 250 212 24 123 chr1 27146345 27146437 -255047227 - L1M4 LINE L1 -2726 3420 3351 2169 122 14 0 chr1 27146437 27146732 -255046932 - AluSq SINE Alu -14 299 1 250 212 24 123 chr1 27146732 27146809 -255046855 - L1M4 LINE L1 -2795 3351 3268 271 298 0 65 chr1 27147356 27147480 -255046184 + MIR SINE MIR 100 215 -47 353 283 74 24 chr1 27147758 27148140 -255045524 - L1MC3 LINE L1 -221 5949 5597 1883 192 80 34 chr1 27148160 27148652 -255045012 - MLT1D LTR MaLR 0 505 1 199 0 0 0 chr1 27148775 27148797 -255044867 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2143 108 11 0 chr1 27148797 27149076 -255044588 - AluSx SINE Alu -1 303 1 332 195 77 16 chr1 27149096 27149261 -255044403 - L1MD2 LINE L1 -16 6343 6070 726 78 0 0 chr1 27149912 27150014 -255043650 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 181 309 78 103 chr1 27150014 27150334 -255043330 - L2 LINE L2 -11 3261 2950 381 288 23 15 chr1 27150444 27150576 -255043088 - MIR3 SINE MIR -17 191 59 221 302 58 12 chr1 27150691 27150777 -255042887 - MIR SINE MIR -57 151 62 341 276 22 67 chr1 27150922 27151009 -255042655 - MIR SINE MIR -61 147 67 1488 181 9 55 chr1 27151009 27151334 -255042330 - AluJb SINE Alu 0 312 3 341 276 22 67 chr1 27151334 27151380 -255042284 - MIR SINE MIR -141 67 20 414 289 25 8 chr1 27152558 27152679 -255040985 + MIR SINE MIR 49 171 -91 282 297 75 22 chr1 27152804 27152942 -255040722 + MIR3 SINE MIR 11 153 -74 201 368 0 11 chr1 27152997 27153092 -255040572 + MIR SINE MIR 4 97 -165 431 255 7 40 chr1 27153301 27153450 -255040214 - L2 LINE L2 -218 3054 2911 1733 212 21 16 chr1 27153570 27153942 -255039722 - MLT1A2 LTR MaLR 0 374 1 273 263 192 0 chr1 27154011 27154110 -255039554 + L2 LINE L2 3150 3267 -5 846 279 43 23 chr1 27154252 27154557 -255039107 - L2 LINE L2 0 3313 3003 2368 229 62 9 chr1 27154558 27154619 -255039045 + MLT1F1 LTR MaLR 3 59 -508 2154 128 0 0 chr1 27154619 27154924 -255038740 + AluSx SINE Alu 1 305 -7 2368 229 62 9 chr1 27154924 27155394 -255038270 + MLT1F1 LTR MaLR 59 562 -5 220 234 68 0 chr1 27155616 27155684 -255037980 - MIR SINE MIR -87 121 49 227 343 38 9 chr1 27155717 27155822 -255037842 + MER5A DNA MER1_type 64 171 -18 231 256 0 39 chr1 27155893 27155971 -255037693 + L2 LINE L2 2985 3059 -213 464 228 0 24 chr1 27156441 27156692 -255036972 + (TG)n Simple_repeat Simple_repeat 1 245 0 478 251 22 25 chr1 27157408 27157587 -255036077 - MIR SINE MIR 0 262 41 306 229 34 155 chr1 27157594 27157758 -255035906 - MIR SINE MIR -68 140 14 297 305 21 0 chr1 27157892 27157987 -255035677 - MIR SINE MIR -116 146 50 262 305 162 9 chr1 27158502 27158607 -255035057 - MIR SINE MIR -71 137 17 250 293 24 0 chr1 27158615 27158697 -255034967 + MIR SINE MIR 64 147 -115 1084 258 81 32 chr1 27158706 27159078 -255034586 - LTR16C LTR ERVL 0 491 102 42 20 0 0 chr1 27159125 27159174 -255034490 + AT_rich Low_complexity Low_complexity 1 49 0 1518 182 32 52 chr1 27159174 27159482 -255034182 - AluJb SINE Alu 0 302 1 5897 247 107 39 chr1 27159844 27160353 -255033311 - HAL1 LINE L1 0 2507 2034 1677 148 7 22 chr1 27160353 27160624 -255033040 + AluJb SINE Alu 1 267 -45 441 0 0 0 chr1 27160631 27160680 -255032984 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 5897 247 107 39 chr1 27160680 27162501 -255031163 - HAL1 LINE L1 -478 2029 12 334 287 5 79 chr1 27162556 27162694 -255030970 + L1M4 LINE L1 4522 4643 -1503 1625 164 36 0 chr1 27162694 27162991 -255030673 + AluSx SINE Alu 1 307 0 334 287 5 79 chr1 27162991 27163053 -255030611 + L1M4 LINE L1 4643 4708 -1438 1898 157 0 0 chr1 27163054 27163383 -255030281 + AluJb SINE Alu 1 329 0 2618 197 70 23 chr1 27163383 27163952 -255029712 + LTR48B LTR ERV1 30 625 -19 376 316 146 18 chr1 27164290 27164461 -255029203 + L2 LINE L2 3076 3268 -4 636 333 99 34 chr1 27164557 27164695 -255028969 - L2 LINE L2 -1 3271 3143 2498 118 28 3 chr1 27164695 27165050 -255028614 + THE1B LTR MaLR 1 364 0 636 333 99 34 chr1 27165050 27165347 -255028317 - L2 LINE L2 -129 3143 2808 754 185 0 8 chr1 27165593 27165723 -255027941 - FLAM_C SINE Alu 0 133 5 591 228 18 77 chr1 27165878 27166295 -255027369 + MLT1C LTR MaLR 12 458 -9 332 298 128 14 chr1 27166462 27166603 -255027061 + MIR SINE MIR 13 169 -93 250 264 55 11 chr1 27166662 27166753 -255026911 + MIR SINE MIR 21 115 -147 187 269 0 90 chr1 27167230 27167308 -255026356 - MIR SINE MIR -79 183 113 259 298 113 8 chr1 27167461 27167585 -255026079 - L1ME4a LINE L1 -8 6113 5977 752 274 102 12 chr1 27168316 27168648 -255025016 - L2 LINE L2 -14 3299 2938 350 175 125 0 chr1 27168821 27168901 -255024763 + MER53 DNA DNA 94 183 -6 236 310 67 54 chr1 27168998 27169237 -255024427 - L2 LINE L2 -557 2757 2516 326 333 46 0 chr1 27171020 27171173 -255022491 + L2 LINE L2 2904 3063 -209 186 174 43 101 chr1 27171216 27171285 -255022379 + L2 LINE L2 3200 3264 -8 323 332 62 41 chr1 27171305 27171549 -255022115 - MIR SINE MIR -6 256 8 2266 149 6 3 chr1 27171866 27172228 -255021436 + MLT2D LTR ERVL 3 365 -49 895 241 21 25 chr1 27172233 27172470 -255021194 - MLT1K LTR MaLR -159 429 194 673 255 116 14 chr1 27172747 27172963 -255020701 - L3 LINE CR1 -30 1547 1310 459 332 97 0 chr1 27173072 27173268 -255020396 - MIR SINE MIR -36 226 12 303 293 26 17 chr1 27173277 27173393 -255020271 - L3 LINE CR1 -383 1194 1078 1487 262 59 92 chr1 27173394 27174001 -255019663 - MLT1K LTR MaLR 0 588 2 212 345 12 0 chr1 27174072 27174156 -255019508 - L3 LINE CR1 -548 1029 945 496 246 41 16 chr1 27174277 27174399 -255019265 + L2 LINE L2 3189 3313 0 1603 256 107 31 chr1 27174470 27174876 -255018788 - L2 LINE L2 -90 3223 2849 1711 158 3 31 chr1 27174876 27175193 -255018471 - AluJb SINE Alu -4 308 1 1603 256 107 31 chr1 27175193 27175708 -255017956 - L2 LINE L2 -464 2849 2241 265 315 54 2 chr1 27175825 27175940 -255017724 - MIR SINE MIR -63 145 54 880 311 24 25 chr1 27176045 27176506 -255017158 - MLT1K LTR MaLR -56 532 3 261 274 20 0 chr1 27176740 27176842 -255016822 + L2 LINE L2 2866 2969 -303 284 302 180 0 chr1 27176891 27177030 -255016634 + L2 LINE L2 3109 3272 0 464 300 29 0 chr1 27177566 27177706 -255015958 - MIR SINE MIR -73 189 46 561 179 163 63 chr1 27177717 27177747 -255015917 + MER63A DNA MER1_type 2 28 -1660 216 0 0 0 chr1 27177747 27177771 -255015893 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 561 179 163 63 chr1 27177771 27177930 -255015734 + MER63A DNA MER1_type 28 210 0 445 280 72 31 chr1 27178686 27178879 -255014785 + MIR SINE MIR 47 247 -15 906 229 21 0 chr1 27179003 27179195 -255014469 + MIR SINE MIR 67 262 0 283 284 58 52 chr1 27179537 27179692 -255013972 + MLT1K LTR MaLR 100 255 -333 261 284 40 14 chr1 27179795 27179869 -255013795 + MIR SINE MIR 36 111 -97 284 260 260 8 chr1 27179955 27180078 -255013586 - MIR SINE MIR -96 166 13 317 281 22 0 chr1 27180200 27180289 -255013375 + MIR SINE MIR 58 148 -60 216 275 199 0 chr1 27180911 27181042 -255012622 + MIR3 SINE MIR 30 186 -22 211 333 25 0 chr1 27181506 27181587 -255012077 + MIR3 SINE MIR 111 193 -15 223 342 112 0 chr1 27181893 27182045 -255011619 + L2 LINE L2 2870 3038 -234 403 261 33 20 chr1 27182543 27182696 -255010968 + (GGTTG)n Simple_repeat Simple_repeat 1 155 0 328 175 36 119 chr1 27182735 27182929 -255010735 + (GGTTG)n Simple_repeat Simple_repeat 2 179 0 213 39 0 0 chr1 27183632 27183658 -255010006 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2822 16 0 0 chr1 27183666 27183984 -255009680 - AluYb8 SINE Alu 0 318 1 343 372 14 7 chr1 27184377 27184525 -255009139 - MIR3 SINE MIR -31 177 29 303 200 43 0 chr1 27184558 27184628 -255009036 + MIR SINE MIR 58 130 -78 1161 182 34 5 chr1 27184634 27184843 -255008821 + MER20 DNA MER1_type 1 215 -4 598 178 19 0 chr1 27184853 27184960 -255008704 + MER81 DNA DNA 6 114 0 323 276 65 24 chr1 27185413 27185536 -255008128 + L2 LINE L2 3144 3271 -1 2196 85 3 23 chr1 27185807 27186112 -255007552 - AluSx SINE Alu -13 299 1 426 226 52 9 chr1 27186179 27186294 -255007370 + MIR SINE MIR 65 184 -78 205 171 0 71 chr1 27187326 27187396 -255006268 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 293 88 113 6 chr1 27187404 27187564 -255006100 + (TA)n Simple_repeat Simple_repeat 1 177 0 249 235 45 45 chr1 27187576 27187755 -255005909 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 295 286 28 34 chr1 27187695 27187873 -255005791 + (TTACG)n Simple_repeat Simple_repeat 3 179 0 249 169 41 29 chr1 27188015 27188187 -255005477 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 296 339 120 6 chr1 27188809 27188992 -255004672 - MER113 DNA MER1_type? -83 438 235 1271 219 126 91 chr1 27189012 27189533 -255004131 + MLT1E3 LTR MaLR 34 622 -2 1832 89 0 0 chr1 27189549 27189785 -255003879 - AluSx SINE Alu -76 236 1 1253 258 120 34 chr1 27189870 27190378 -255003286 + MLT1H1 LTR MaLR 1 552 -3 183 302 0 0 chr1 27190525 27190568 -255003096 - L2 LINE L2 -11 3261 3219 180 200 0 25 chr1 27190671 27190711 -255002953 + L2 LINE L2 3270 3308 -5 252 233 233 0 chr1 27190743 27190846 -255002818 - L2 LINE L2 -1 3271 3145 457 278 148 22 chr1 27190947 27191177 -255002487 - MIR SINE MIR -2 260 2 270 277 40 30 chr1 27192770 27192871 -255000793 - L2 LINE L2 -493 2821 2720 1635 177 34 0 chr1 27192919 27193213 -255000451 - AluJb SINE Alu -8 304 1 1925 102 11 0 chr1 27193222 27193513 -255000151 - AluSc SINE Alu 0 313 20 228 322 116 0 chr1 27193516 27193637 -255000027 - MER117 DNA MER1_type -32 165 31 267 308 0 13 chr1 27193763 27193841 -254999823 - MIR SINE MIR -107 155 79 2393 197 30 17 chr1 27195525 27195998 -254997666 + MLT1F LTR MaLR 57 535 -7 1771 188 48 24 chr1 27196066 27196169 -254997495 + LTR37B LTR ERV1 1 100 -368 2259 147 55 0 chr1 27196169 27196515 -254997149 + MLT1A1 LTR MaLR 1 365 0 1771 188 48 24 chr1 27196515 27196868 -254996796 + LTR37B LTR ERV1 100 468 0 241 303 135 45 chr1 27196879 27197057 -254996607 - L3 LINE CR1 -126 1451 1258 21 0 0 0 chr1 27197118 27197139 -254996525 + AT_rich Low_complexity Low_complexity 1 21 0 187 403 0 0 chr1 27197699 27197771 -254995893 + L2 LINE L2 3140 3211 -61 771 175 19 25 chr1 27198384 27198544 -254995120 - MIR SINE MIR -75 187 29 519 294 87 0 chr1 27198618 27198802 -254994862 + MIR SINE MIR 46 245 -17 187 314 12 23 chr1 27199091 27199177 -254994487 + MIR SINE MIR 21 105 -157 237 299 119 60 chr1 27199225 27199359 -254994305 + MIR SINE MIR 117 258 -4 291 377 31 0 chr1 27199368 27199498 -254994166 - MIR SINE MIR -70 192 59 426 326 62 5 chr1 27200018 27200211 -254993453 - MIR SINE MIR -51 211 8 218 256 167 13 chr1 27200257 27200335 -254993329 + MER5B DNA MER1_type 1 90 -88 2047 130 16 0 chr1 27200356 27200691 -254992973 + AluSx SINE Alu 1 340 0 281 270 0 0 chr1 27200730 27200793 -254992871 - MIR SINE MIR -55 153 91 413 221 84 0 chr1 27201471 27201566 -254992098 + MIR3 SINE MIR 82 184 -24 2294 113 0 0 chr1 27201650 27201961 -254991703 + AluSx SINE Alu 1 311 -1 257 259 19 0 chr1 27202311 27202365 -254991299 + MIR SINE MIR 15 69 -193 235 318 91 23 chr1 27203266 27203398 -254990266 + MIR SINE MIR 6 146 -116 187 378 0 11 chr1 27203526 27203616 -254990048 - MIR3 SINE MIR -25 183 95 268 280 0 56 chr1 27203705 27203812 -254989852 + MIR3 SINE MIR 87 187 -21 492 255 76 0 chr1 27204400 27204557 -254989107 + MIR3 SINE MIR 2 170 -38 477 273 0 0 chr1 27205224 27205622 -254988042 + (CA)n Simple_repeat Simple_repeat 1 398 0 225 298 0 0 chr1 27205642 27205746 -254987918 + (CA)n Simple_repeat Simple_repeat 1 104 0 283 296 43 84 chr1 27205948 27206170 -254987494 - MIR SINE MIR -42 220 4 405 254 39 16 chr1 27207043 27207210 -254986454 + MER5A DNA MER1_type 6 178 0 271 130 22 0 chr1 27207391 27207437 -254986227 + MIR SINE MIR 81 127 -81 229 333 74 9 chr1 27208816 27208924 -254984740 + MIR SINE MIR 100 214 -48 727 231 61 106 chr1 27208941 27209205 -254984459 - MIR SINE MIR -10 252 1 597 306 56 37 chr1 27209251 27209599 -254984065 + L2 LINE L2 2915 3272 0 297 317 77 0 chr1 27210969 27211073 -254982591 + MIR3 SINE MIR 87 198 -10 276 271 59 0 chr1 27211160 27211245 -254982419 - MIR SINE MIR -81 127 38 393 320 39 0 chr1 27211451 27211607 -254982057 - MIR3 SINE MIR -35 173 11 888 161 0 7 chr1 27211632 27211781 -254981883 + FRAM SINE Alu 1 148 -28 180 0 0 0 chr1 27211781 27211801 -254981863 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr1 27212195 27212218 -254981446 + AT_rich Low_complexity Low_complexity 1 23 0 447 324 43 0 chr1 27213017 27213156 -254980508 + MIR SINE MIR 12 156 -106 193 304 0 0 chr1 27215021 27215067 -254978597 + L2 LINE L2 3217 3262 -10 367 274 118 33 chr1 27215082 27215235 -254978429 + L1ME4a LINE L1 5926 6091 -30 557 307 118 13 chr1 27215483 27215711 -254977953 + MIR SINE MIR 8 259 -3 2200 127 0 6 chr1 27215722 27216036 -254977628 - AluSx SINE Alu 0 312 1 435 183 47 6 chr1 27216600 27216988 -254976676 + (TGGA)n Simple_repeat Simple_repeat 1 403 0 315 323 89 25 chr1 27217193 27217351 -254976313 - L2 LINE L2 -2 3270 3103 265 254 0 42 chr1 27217674 27217745 -254975919 + MIR3 SINE MIR 101 168 -40 * 443 325 9 0 chr1 27217741 27217855 -254975809 - MIR SINE MIR -1 261 147 446 240 91 26 chr1 27218603 27218757 -254974907 - MIR SINE MIR -92 170 7 192 211 211 0 chr1 27218908 27218979 -254974685 + L2 LINE L2 3170 3255 -17 325 293 38 47 chr1 27219207 27219313 -254974351 + MIR SINE MIR 20 124 -138 399 276 35 0 chr1 27219811 27219927 -254973737 + MIR SINE MIR 31 150 -58 181 278 111 0 chr1 27220008 27220080 -254973584 - MIR SINE MIR -124 138 59 288 276 67 9 chr1 27220087 27220192 -254973472 + MIR SINE MIR 20 130 -78 465 66 0 0 chr1 27220852 27220913 -254972751 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 167 28 0 chr1 27221016 27221052 -254972612 - MIR SINE MIR -116 146 110 758 175 0 16 chr1 27221267 27221450 -254972214 + (CCA)n Simple_repeat Simple_repeat 1 180 0 248 242 20 0 chr1 27221452 27221551 -254972113 + (CACCAT)n Simple_repeat Simple_repeat 5 105 0 658 234 0 12 chr1 27221566 27221995 -254971669 + (CCA)n Simple_repeat Simple_repeat 1 423 0 982 260 14 5 chr1 27222313 27222536 -254971128 - MIR SINE MIR -37 225 1 452 266 35 0 chr1 27222597 27222710 -254970954 + L2 LINE L2 3197 3313 0 498 239 12 32 chr1 27222890 27223093 -254970571 - MIR SINE MIR -27 235 39 237 65 0 0 chr1 27223246 27223277 -254970387 + (CACCC)n Simple_repeat Simple_repeat 4 34 0 393 297 29 14 chr1 27223588 27223726 -254969938 - MIR SINE MIR -29 233 94 238 256 49 61 chr1 27223923 27224005 -254969659 - MIR SINE MIR 0 262 182 * 1119 222 92 35 chr1 27223993 27224362 -254969302 - L2 LINE L2 0 3313 2924 452 252 63 9 chr1 27224476 27224587 -254969077 - MIR SINE MIR -72 136 20 373 265 74 19 chr1 27225385 27225547 -254968117 - MIR3 SINE MIR -27 181 11 309 226 108 0 chr1 27225769 27225862 -254967802 + MIR SINE MIR 100 202 -60 878 238 94 28 chr1 27226027 27226346 -254967318 + LTR16C LTR ERVL 149 488 -3 378 291 165 11 chr1 27226349 27226531 -254967133 - MIR SINE MIR -49 213 4 497 286 26 0 chr1 27226686 27226840 -254966824 - L2 LINE L2 -230 3042 2885 24 0 0 0 chr1 27227050 27227074 -254966590 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr1 27227089 27227109 -254966555 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 303 264 73 39 chr1 27227124 27227302 -254966362 - L1 LINE L1 -1071 5075 4892 300 62 21 0 chr1 27227479 27227527 -254966137 - MER52C LTR ERV1 0 1278 1230 4576 229 85 50 chr1 27227532 27228993 -254964671 - MER52A LTR ERV1 -243 1512 1 1200 174 60 30 chr1 27228992 27229369 -254964295 - MLT1D LTR MaLR -3 502 85 * 1129 196 8 36 chr1 27229369 27229619 -254964045 - MLT1D-int LTR MaLR -141 1230 988 232 159 16 32 chr1 27229651 27229714 -254963950 + L1M4 LINE L1 4951 5012 -1134 * 972 227 97 14 chr1 27229713 27229991 -254963673 + L1ME1 LINE L1 5857 6157 -9 2119 91 0 55 chr1 27229991 27230299 -254963365 - AluSc SINE Alu -18 291 1 750 125 30 12 chr1 27230346 27230514 -254963150 + GA-rich Low_complexity Low_complexity 3 173 0 657 322 93 4 chr1 27231040 27231276 -254962388 + MIR SINE MIR 5 261 -1 323 258 54 0 chr1 27231693 27231786 -254961878 + MIR SINE MIR 56 153 -55 405 228 61 18 chr1 27231824 27231938 -254961726 - MIR SINE MIR -27 235 117 193 339 0 0 chr1 27231989 27232045 -254961619 - MIR SINE MIR -63 145 90 675 276 14 28 chr1 27232785 27232999 -254960665 - MIR SINE MIR -3 259 49 279 319 98 6 chr1 27234459 27234622 -254959042 - L1MC4a LINE L1 -1922 5886 5709 260 54 0 0 chr1 27234729 27234766 -254958898 + MER4A LTR ERV1 1 37 -627 326 345 36 7 chr1 27235800 27235939 -254957725 - MER5B DNA MER1_type 0 178 36 375 246 161 0 chr1 27236107 27236237 -254957427 - MER104 DNA Tc2 -26 154 4 327 371 117 26 chr1 27236335 27236764 -254956900 + L2 LINE L2 2825 3292 -21 423 314 104 36 chr1 27237191 27237411 -254956253 + MIR SINE MIR 18 252 -10 1538 218 32 50 chr1 27237919 27238299 -254955365 + MLT1A2 LTR MaLR 2 374 0 349 237 0 26 chr1 27238301 27238377 -254955287 + MIR SINE MIR 79 152 -110 337 369 114 21 chr1 27238908 27239144 -254954520 - MIR SINE MIR -1 261 4 769 171 6 11 chr1 27239707 27239888 -254953776 + CT-rich Low_complexity Low_complexity 1 180 0 249 108 0 0 chr1 27239918 27239955 -254953709 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 190 361 92 29 chr1 27239968 27240206 -254953458 - L2 LINE L2 -67 3246 2994 227 333 39 0 chr1 27240636 27240714 -254952950 + MIR SINE MIR 66 146 -62 356 294 37 0 chr1 27241251 27241360 -254952304 + MIR SINE MIR 33 145 -63 443 250 17 50 chr1 27241360 27241540 -254952124 - LTR16B LTR ERVL 0 464 291 548 305 100 5 chr1 27242483 27242693 -254950971 - MIR SINE MIR -1 261 32 266 320 136 0 chr1 27242757 27242882 -254950782 - MIR SINE MIR -62 200 59 17671 32 0 0 chr1 27243655 27246524 -254947140 + L1PA3 LINE L1 3264 6153 -2 767 210 56 0 chr1 27246572 27246734 -254946930 + MIR SINE MIR 61 231 -31 234 290 0 14 chr1 27246760 27246829 -254946835 - L1MC4a LINE L1 -2166 5642 5575 206 398 17 0 chr1 27247107 27247225 -254946439 + MIR3 SINE MIR 9 128 -80 296 207 0 0 chr1 27247328 27247386 -254946278 + MER96 DNA MER1_type? 115 172 -3 303 232 9 89 chr1 27247388 27247500 -254946164 + MIR SINE MIR 116 218 -44 216 67 0 0 chr1 27247637 27247667 -254945997 + (TG)n Simple_repeat Simple_repeat 2 31 0 272 233 0 78 chr1 27248022 27248125 -254945539 - MIR SINE MIR -80 182 88 2223 115 3 3 chr1 27248725 27249037 -254944627 + AluSq SINE Alu 1 312 -1 241 310 26 35 chr1 27249075 27249188 -254944476 - MIR SINE MIR -33 229 118 991 286 85 24 chr1 27249189 27249647 -254944017 - LTR16C LTR ERVL -2 489 4 358 258 22 0 chr1 27249649 27249738 -254943926 - MIR SINE MIR -84 124 34 369 0 0 0 chr1 27250024 27250065 -254943599 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 451 284 0 68 chr1 27250171 27250361 -254943303 + Charlie8 DNA MER1_type 4 180 -2237 384 253 63 32 chr1 27250491 27250649 -254943015 + MIR3 SINE MIR 22 184 -24 190 360 50 0 chr1 27252110 27252210 -254941454 - MIR SINE MIR -113 149 45 265 317 5 54 chr1 27253425 27253611 -254940053 + C-rich Low_complexity Low_complexity 4 180 0 * 381 337 12 6 chr1 27253512 27253681 -254939983 + CT-rich Low_complexity Low_complexity 3 172 0 355 281 92 20 chr1 27254795 27254948 -254938716 - L2 LINE L2 -1 3312 3149 277 286 0 0 chr1 27254944 27255007 -254938657 - MIR SINE MIR 0 262 200 * 286 261 70 38 chr1 27255017 27255174 -254938490 + L1ME4a LINE L1 5922 6083 -38 186 118 0 0 chr1 27255254 27255288 -254938376 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 476 258 172 21 chr1 27255899 27256085 -254937579 - MIR SINE MIR -48 214 1 559 282 0 13 chr1 27256188 27256337 -254937327 + MIR3 SINE MIR 4 150 -58 582 273 98 8 chr1 27256383 27256619 -254937045 - MIR SINE MIR -3 259 2 180 236 18 18 chr1 27256724 27256779 -254936885 + L2 LINE L2 3211 3265 -7 614 293 16 21 chr1 27257361 27257549 -254936115 - MIR3 SINE MIR -4 204 18 284 259 118 47 chr1 27257869 27257987 -254935677 + MIR SINE MIR 49 184 -78 2284 173 31 5 chr1 27257987 27258408 -254935256 + MSTB1 LTR MaLR 1 432 0 284 259 118 47 chr1 27258408 27258459 -254935205 + MIR SINE MIR 184 230 -32 1663 241 41 2 chr1 27258550 27258985 -254934679 - HsTC2 DNA Tc2 -7 1891 1440 411 113 0 113 chr1 27259033 27259130 -254934534 - FLAM_C SINE Alu 0 143 58 479 229 153 13 chr1 27259132 27259289 -254934375 - HsTC2 DNA Tc2 -446 1452 1274 524 231 243 0 chr1 27259395 27259564 -254934100 - MIR SINE MIR -6 256 47 731 261 47 14 chr1 27259728 27259939 -254933725 - MIR SINE MIR -29 233 16 351 0 0 0 chr1 27310685 27310724 -254882940 + (CA)n Simple_repeat Simple_repeat 2 40 0 804 185 60 38 chr1 27312209 27312393 -254881271 - MER5A DNA MER1_type 0 189 2 2207 126 0 0 chr1 27312478 27312772 -254880892 + AluSx SINE Alu 5 298 -14 358 234 9 36 chr1 27313607 27313718 -254879946 - MER117 DNA MER1_type -33 164 57 32 26 0 0 chr1 27313754 27313793 -254879871 + AT_rich Low_complexity Low_complexity 1 39 0 193 312 91 0 chr1 27313812 27313889 -254879775 + L2 LINE L2 3226 3309 -4 329 312 96 8 chr1 27314288 27314413 -254879251 - MIR3 SINE MIR -49 159 24 2221 121 0 0 chr1 27314457 27314746 -254878918 + AluSg SINE Alu 1 289 -21 456 276 167 9 chr1 27314913 27315134 -254878530 + L2 LINE L2 2804 3059 -254 232 241 101 13 chr1 27315166 27315245 -254878419 + L2 LINE L2 3228 3313 0 252 183 118 65 chr1 27315288 27315381 -254878283 + MIR SINE MIR 35 132 -76 279 93 0 0 chr1 27316421 27316464 -254877200 + (TG)n Simple_repeat Simple_repeat 2 44 0 227 128 0 0 chr1 27316805 27316844 -254876820 - Alu SINE Alu -6 296 258 428 290 27 10 chr1 27316910 27317184 -254876480 - MER115 DNA AcHobo -318 375 33 663 312 45 25 chr1 27317206 27317646 -254876018 + L2 LINE L2 2638 3084 -229 769 237 36 41 chr1 27317813 27317984 -254875680 - MIR SINE MIR -2 260 89 2222 123 0 26 chr1 27317984 27318292 -254875372 - AluSx SINE Alu -12 300 1 769 237 36 41 chr1 27318292 27318339 -254875325 - MIR SINE MIR -173 89 43 243 0 0 0 chr1 27318453 27318480 -254875184 + (CA)n Simple_repeat Simple_repeat 2 28 0 485 296 33 33 chr1 27318784 27318997 -254874667 + MIR SINE MIR 48 260 -2 208 329 27 0 chr1 27319912 27319984 -254873680 + MIR SINE MIR 34 107 -155 537 276 96 0 chr1 27319984 27320210 -254873454 + MIR SINE MIR 1 249 -13 1924 151 27 0 chr1 27320811 27321110 -254872554 + AluJb SINE Alu 3 309 -3 513 141 22 60 chr1 27321114 27321298 -254872366 + GA-rich Low_complexity Low_complexity 2 178 0 505 285 72 45 chr1 27322024 27322461 -254871203 + MLT1L LTR MaLR 58 612 -3 247 191 0 107 chr1 27322493 27322577 -254871087 - MLT1K LTR MaLR 0 588 514 22 0 0 0 chr1 27322770 27322792 -254870872 + AT_rich Low_complexity Low_complexity 1 22 0 2498 65 0 0 chr1 27323346 27323639 -254870025 + AluSx SINE Alu 1 293 -19 359 291 31 39 chr1 27323798 27323925 -254869739 + L2 LINE L2 3147 3272 0 2345 105 0 0 chr1 27324615 27324909 -254868755 - AluSx SINE Alu -18 294 1 418 186 12 23 chr1 27325001 27325087 -254868577 - MIR3 SINE MIR -46 162 78 483 141 0 0 chr1 27325364 27325442 -254868222 + AluS SINE Alu 7 84 -229 253 244 37 37 chr1 27325471 27325553 -254868111 + CT-rich Low_complexity Low_complexity 2 83 0 538 248 39 33 chr1 27325589 27325742 -254867922 + MIR3 SINE MIR 34 187 -21 2359 106 3 0 chr1 27325832 27326135 -254867529 - AluSq SINE Alu -9 304 1 2538 175 37 10 chr1 27326898 27327390 -254866274 - MLT1D LTR MaLR 0 505 1 584 262 18 24 chr1 27327420 27327588 -254866076 + MLT1H LTR MaLR 8 174 -375 712 211 36 24 chr1 27327742 27327908 -254865756 + MLT1H LTR MaLR 382 549 0 255 277 0 85 chr1 27328237 27328331 -254865333 + MIR SINE MIR 13 98 -164 2945 41 0 0 chr1 27328395 27328763 -254864901 - L1PA4 LINE L1 -1 6154 5787 1706 62 0 0 chr1 27328763 27328989 -254864675 + L1P LINE L1 1143 1368 -4778 595 246 62 17 chr1 27329224 27329403 -254864261 + MIR SINE MIR 76 262 0 766 231 57 98 chr1 27329761 27330219 -254863445 + MLT1H1 LTR MaLR 115 553 -2 2287 120 0 0 chr1 27330371 27330671 -254862993 + AluSx SINE Alu 6 305 -7 710 259 97 0 chr1 27330730 27330946 -254862718 + MIR SINE MIR 12 248 -14 2255 119 0 3 chr1 27331812 27332115 -254861549 - AluSx SINE Alu -10 302 1 543 281 135 0 chr1 27332266 27332458 -254861206 + MIR SINE MIR 31 248 -14 207 0 0 0 chr1 27333540 27333563 -254860101 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 985 109 29 0 chr1 27333566 27333703 -254859961 - AluSg/x SINE Alu -35 277 137 2471 63 0 13 chr1 27333705 27334005 -254859659 - AluSg SINE Alu -14 296 1 540 236 8 16 chr1 27334009 27334136 -254859528 + MIR SINE MIR 68 193 -69 456 279 134 0 chr1 27334295 27334467 -254859197 - ERVL LTR ERVL -1966 3798 3604 1497 134 5 31 chr1 27334477 27334701 -254858963 + AluJo SINE Alu 1 218 -94 2256 109 20 0 chr1 27334725 27335029 -254858635 + AluSx SINE Alu 1 310 -2 794 353 29 17 chr1 27335124 27335535 -254858129 - ERVL LTR ERVL -2199 3565 3150 665 168 136 77 chr1 27335537 27335620 -254858044 + ORSL DNA AcHobo 2 79 -196 2197 108 17 0 chr1 27335620 27335917 -254857747 + AluSx SINE Alu 1 302 -10 665 168 136 77 chr1 27335917 27336053 -254857611 + ORSL DNA AcHobo 79 234 -41 986 336 0 4 chr1 27336104 27336375 -254857289 - ERVL LTR ERVL -1905 3091 2822 1767 114 0 0 chr1 27336400 27336628 -254857036 - AluSx SINE Alu -83 229 2 1619 206 7 27 chr1 27336642 27336702 -254856962 - Looper DNA T2_type -1 1557 1497 1943 82 4 0 chr1 27336702 27336946 -254856718 - AluY SINE Alu -7 304 60 1619 206 7 27 chr1 27336946 27337297 -254856367 - Looper DNA T2_type -61 1497 1154 1894 158 31 36 chr1 27337916 27337944 -254855720 - Looper DNA T2_type -1107 451 424 1995 179 0 3 chr1 27337944 27338257 -254855407 + AluJb SINE Alu 1 312 0 1894 158 31 36 chr1 27338257 27338647 -254855017 - Looper DNA T2_type -1134 424 35 579 314 60 32 chr1 27338796 27339232 -254854432 - MLT1J2 LTR MaLR -2 448 1 2172 133 0 7 chr1 27339325 27339626 -254854038 + AluSx SINE Alu 1 299 -13 2261 88 7 14 chr1 27339626 27339920 -254853744 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr1 27339920 27339945 -254853719 + AT_rich Low_complexity Low_complexity 1 25 0 2244 93 10 10 chr1 27340079 27340369 -254853295 - AluSx SINE Alu -22 290 1 387 286 0 9 chr1 27340946 27341051 -254852613 - MER5A DNA MER1_type -80 109 6 355 281 92 20 chr1 27342274 27342427 -254851237 - L2 LINE L2 -1 3312 3149 277 286 0 0 chr1 27342423 27342486 -254851178 - MIR SINE MIR 0 262 200 * 286 261 70 38 chr1 27342496 27342653 -254851011 + L1ME4a LINE L1 5922 6083 -38 186 118 0 0 chr1 27342733 27342767 -254850897 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 476 258 172 21 chr1 27343378 27343564 -254850100 - MIR SINE MIR -48 214 1 559 282 0 13 chr1 27343667 27343816 -254849848 + MIR3 SINE MIR 4 150 -58 582 273 98 8 chr1 27343862 27344098 -254849566 - MIR SINE MIR -3 259 2 180 236 18 18 chr1 27344203 27344258 -254849406 + L2 LINE L2 3211 3265 -7 600 298 16 21 chr1 27344840 27345028 -254848636 - MIR3 SINE MIR -4 204 18 316 263 116 56 chr1 27345238 27345373 -254848291 + MIR SINE MIR 34 186 -76 2425 161 36 9 chr1 27345373 27345794 -254847870 + MSTB1 LTR MaLR 1 432 0 316 263 116 56 chr1 27345794 27345856 -254847808 + MIR SINE MIR 186 243 -19 1709 241 41 2 chr1 27345936 27346371 -254847293 - HsTC2 DNA Tc2 -7 1891 1440 429 91 0 131 chr1 27346416 27346515 -254847149 - FLAM_A SINE Alu 0 142 57 515 223 153 13 chr1 27346517 27346674 -254846990 - HsTC2 DNA Tc2 -446 1452 1274 182 111 28 28 chr1 27346780 27346816 -254846848 - MIR SINE MIR -6 256 221 552 209 29 0 chr1 27346844 27346949 -254846715 - MIR SINE MIR -108 154 47 763 246 52 19 chr1 27347113 27347324 -254846340 - MIR SINE MIR -29 233 16 395 242 24 32 chr1 27348076 27348200 -254845464 - MER5B DNA MER1_type -54 124 2 333 265 51 20 chr1 27348243 27348341 -254845323 - MIR3 SINE MIR -18 190 90 198 0 0 0 chr1 27348749 27348771 -254844893 + (A)n Simple_repeat Simple_repeat 1 22 0 2138 97 7 0 chr1 27348771 27349059 -254844605 + AluSx SINE Alu 1 290 -22 617 245 117 10 chr1 27350389 27350585 -254843079 + MIR SINE MIR 46 262 0 365 213 74 39 chr1 27350574 27350591 -254843073 - MIR SINE MIR -65 143 128 * 326 23 0 23 chr1 27350591 27350635 -254843029 + (CAT)n Simple_repeat Simple_repeat 1 43 0 365 213 74 39 chr1 27350635 27350773 -254842891 - MIR SINE MIR -80 128 4 277 232 106 28 chr1 27351689 27351831 -254841833 + L2 LINE L2 2826 2978 -335 1485 163 6 62 chr1 27352094 27352440 -254841224 - AluJo SINE Alu 0 312 1 573 272 57 31 chr1 27352456 27352684 -254840980 - MIR SINE MIR 0 262 29 210 310 35 11 chr1 27352713 27352800 -254840864 - L3b LINE CR1 -197 1386 1298 409 202 0 216 chr1 27353197 27353405 -254840259 + MIR SINE MIR 100 262 0 364 247 39 57 chr1 27353492 27353655 -254840009 - MER5A DNA MER1_type -4 185 15 2448 55 7 0 chr1 27353655 27353964 -254839700 + AluY SINE Alu 1 311 0 247 245 0 0 chr1 27354071 27354124 -254839540 + CT-rich Low_complexity Low_complexity 2 54 0 526 309 36 6 chr1 27354340 27354508 -254839156 - MIR3 SINE MIR -27 181 9 700 290 50 9 chr1 27354580 27354801 -254838863 - MIR SINE MIR -13 249 20 1108 221 290 0 chr1 27354807 27355214 -254838450 + LTR50 LTR ERVL 1 525 -270 290 222 74 37 chr1 27355255 27355323 -254838341 + LTR50 LTR ERVL 629 707 -88 2297 63 0 0 chr1 27355323 27355634 -254838030 + AluSg SINE Alu 1 311 0 290 222 74 37 chr1 27355634 27355670 -254837994 + LTR50 LTR ERVL 707 740 -55 * 540 220 191 14 chr1 27355668 27355877 -254837787 + LTR50 LTR ERVL 259 504 -291 2201 94 0 7 chr1 27355982 27356280 -254837384 - AluSx SINE Alu -16 296 1 3918 148 75 18 chr1 27356423 27356497 -254837167 + L1MD1 LINE L1 5345 5413 -829 615 155 13 45 chr1 27356497 27356652 -254837012 + L1MA5 LINE L1 6151 6300 0 3918 148 75 18 chr1 27356652 27357301 -254836363 + L1MD1 LINE L1 5413 6109 -133 529 14 29 0 chr1 27357314 27357384 -254836280 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1943 89 7 29 chr1 27357384 27357664 -254836000 - AluSc SINE Alu -20 289 16 327 25 0 0 chr1 27357664 27357704 -254835960 + (TC)n Simple_repeat Simple_repeat 2 41 0 239 154 0 0 chr1 27357734 27357786 -254835878 + L1MC4 LINE L1 6652 6703 -1339 320 210 0 0 chr1 27357814 27357876 -254835788 - AluS SINE Alu -241 62 1 772 141 0 0 chr1 27357883 27358011 -254835653 + L1MD1 LINE L1 6114 6241 -1 2189 71 4 4 chr1 27359273 27359600 -254834064 + AluSx SINE Alu 1 327 0 453 233 155 78 chr1 27359907 27360178 -254833486 + L1ME4a LINE L1 5807 6098 -23 423 0 0 0 chr1 27360228 27360275 -254833389 + (TA)n Simple_repeat Simple_repeat 2 48 0 218 316 158 43 chr1 27360365 27360599 -254833065 - L2 LINE L2 -40 3232 2972 460 244 0 24 chr1 27360746 27360869 -254832795 - MIR3 SINE MIR -1 207 88 729 260 59 5 chr1 27361298 27361502 -254832162 + MIR SINE MIR 8 222 -40 513 236 16 31 chr1 27361515 27361642 -254832022 + L2 LINE L2 3148 3272 0 334 311 43 0 chr1 27361790 27361951 -254831713 + L1MC4 LINE L1 422 589 -5941 1541 256 87 76 chr1 27361980 27362590 -254831074 + L1MC4 LINE L1 677 1279 -5442 2035 120 13 3 chr1 27362590 27362889 -254830775 + AluSx SINE Alu 1 302 -10 1541 256 87 76 chr1 27362889 27363308 -254830356 + L1MC4 LINE L1 1279 1692 -5029 905 199 0 11 chr1 27363308 27363499 -254830165 + MER53 DNA DNA 1 189 0 1541 256 87 76 chr1 27363499 27363912 -254829752 + L1MC4 LINE L1 1692 2137 -4584 1602 151 13 37 chr1 27363969 27364267 -254829397 + AluJo SINE Alu 1 291 -21 328 281 97 49 chr1 27364400 27364585 -254829079 + L1MC4 LINE L1 2344 2537 -4003 768 283 125 40 chr1 27364612 27365172 -254828492 + L1MC4 LINE L1 2618 3250 -3290 2164 88 20 0 chr1 27365172 27365467 -254828197 + AluY SINE Alu 1 301 -10 768 283 125 40 chr1 27365467 27365603 -254828061 + L1MC4 LINE L1 3250 3373 -3167 911 130 26 0 chr1 27365603 27365757 -254827907 + BC200 scRNA scRNA 1 158 -42 289 263 155 7 chr1 27365757 27366029 -254827635 + L1MC4 LINE L1 3358 7922 -514 2832 216 59 10 chr1 27366029 27366621 -254827043 - MLT1E2 LTR MaLR 0 626 6 1119 267 16 26 chr1 27366623 27367001 -254826663 + L1MC4 LINE L1 7917 8290 -146 307 105 53 13 chr1 27367006 27367082 -254826582 + GA-rich Low_complexity Low_complexity 1 79 0 271 180 191 0 chr1 27367089 27367178 -254826486 + L1MC4 LINE L1 8327 8432 -4 981 231 77 126 chr1 27367205 27367910 -254825754 + L1ME3A LINE L1 3211 3949 -2197 2062 115 7 7 chr1 27367910 27368205 -254825459 + AluSq SINE Alu 3 297 -16 1762 137 29 35 chr1 27368207 27368521 -254825143 + AluJb SINE Alu 1 312 0 981 231 77 126 chr1 27368521 27369014 -254824650 + L1ME3A LINE L1 3950 4334 -1812 2087 104 13 0 chr1 27369048 27369356 -254824308 - AluSx SINE Alu 0 312 1 25 51 0 0 chr1 27369370 27369409 -254824255 + AT_rich Low_complexity Low_complexity 1 39 0 884 249 93 88 chr1 27369537 27370059 -254823605 + L1ME3A LINE L1 4315 4833 -1337 2243 99 0 0 chr1 27370059 27370363 -254823301 + AluSx SINE Alu 1 304 -8 884 249 93 88 chr1 27370363 27370665 -254822999 + L1ME3A LINE L1 4833 5132 -1038 2697 90 3 8 chr1 27370665 27371041 -254822623 - L1PB1 LINE L1 -2 6149 5776 884 249 93 88 chr1 27371041 27371955 -254821709 + L1ME3A LINE L1 5132 6056 -114 411 156 111 11 chr1 27372197 27372287 -254821377 - MIR SINE MIR -49 213 115 467 278 104 12 chr1 27372354 27372527 -254821137 + L2 LINE L2 2184 2372 -942 1377 169 77 7 chr1 27372647 27372919 -254820745 + L1MC4 LINE L1 6743 7033 -1009 * 5724 168 65 47 chr1 27372907 27373106 -254820558 + L1ME1 LINE L1 3850 4044 -2289 274 103 0 0 chr1 27373106 27373145 -254820519 - U2 snRNA snRNA -149 39 1 5724 168 65 47 chr1 27373145 27373491 -254820173 + L1ME1 LINE L1 4044 4382 -1951 2019 142 0 0 chr1 27373491 27373800 -254819864 + AluSx SINE Alu 1 309 -3 5724 168 65 47 chr1 27373800 27374688 -254818976 + L1ME1 LINE L1 4382 5253 -1080 949 218 0 0 chr1 27374688 27374858 -254818806 + FAM SINE Alu 1 170 -5 5724 168 65 47 chr1 27374858 27375806 -254817858 + L1ME1 LINE L1 5253 6333 0 537 145 0 0 chr1 27375814 27375890 -254817774 + AluJ/FLAM SINE Alu 2 77 -235 946 236 144 0 chr1 27375895 27376166 -254817498 + L1MC4 LINE L1 7533 7842 -200 25 31 0 0 chr1 27376975 27377007 -254816657 + AT_rich Low_complexity Low_complexity 1 32 0 4055 168 69 27 chr1 27377008 27377470 -254816194 + L1MB5 LINE L1 4928 5369 -805 1467 145 42 28 chr1 27377470 27377759 -254815905 + L1MA8 LINE L1 5995 6287 -4 4055 168 69 27 chr1 27377759 27377911 -254815753 + L1MB5 LINE L1 5369 5513 -661 1666 119 53 69 chr1 27377911 27378214 -254815450 - AluSx SINE Alu -14 298 1 4055 168 69 27 chr1 27378214 27378791 -254814873 + L1MB5 LINE L1 5513 6174 0 1750 60 0 26 chr1 27378849 27379081 -254814583 + AluY SINE Alu 74 299 -12 373 150 14 9 chr1 27379095 27379168 -254814496 + L1MC3 LINE L1 6966 7017 -768 1247 84 6 0 chr1 27379168 27379346 -254814318 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 373 150 14 9 chr1 27379346 27379363 -254814301 + L1MC3 LINE L1 7017 7032 -753 315 122 0 0 chr1 27379363 27379412 -254814252 + (GGGA)n Simple_repeat Simple_repeat 1 49 0 190 309 217 20 chr1 27379648 27379800 -254813864 - L2 LINE L2 -328 2985 2804 231 216 307 0 chr1 27380385 27380473 -254813191 - MIR SINE MIR -72 136 22 1192 209 44 113 chr1 27380779 27381321 -254812343 + LTR22 LTR ERVK 1 505 -4 409 266 125 0 chr1 27381503 27381631 -254812033 + MIR3 SINE MIR 35 178 -30 438 36 0 0 chr1 27381699 27381755 -254811909 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 201 74 0 0 chr1 27381788 27381815 -254811849 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 249 224 0 0 chr1 27381851 27381909 -254811755 + GA-rich Low_complexity Low_complexity 4 61 0 241 315 99 25 chr1 27382384 27382546 -254811118 + L2 LINE L2 2352 2525 -789 589 225 127 80 chr1 27382576 27382631 -254811033 - MIR SINE MIR -27 235 184 1692 156 23 13 chr1 27382631 27382933 -254810731 + AluJo SINE Alu 1 305 -7 589 225 127 80 chr1 27382933 27383090 -254810574 - MIR SINE MIR -78 184 13 572 259 197 73 chr1 27383110 27383284 -254810380 + L2 LINE L2 2552 2703 -610 1937 117 3 7 chr1 27383284 27383673 -254809991 + AluSx SINE Alu 1 388 0 572 259 197 73 chr1 27383673 27384178 -254809486 + L2 LINE L2 2703 3313 0 1761 158 3 0 chr1 27384417 27384715 -254808949 + AluJo SINE Alu 1 299 -13 1358 195 26 89 chr1 27384735 27385115 -254808549 + L1ME3 LINE L1 5754 6109 -53 202 292 0 0 chr1 27385520 27385568 -254808096 - L2 LINE L2 -16 3256 3209 342 111 19 0 chr1 27385663 27385717 -254807947 - MLT2C1 LTR ERVL 0 554 500 864 176 0 0 chr1 27385719 27385889 -254807775 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 2020 163 25 0 chr1 27385889 27386215 -254807449 - MLT2C1 LTR ERVL -61 336 3 293 286 143 15 chr1 27387845 27387978 -254805686 + MIR SINE MIR 102 251 -11 1064 142 0 6 chr1 27387993 27388162 -254805502 + AluJb SINE Alu 143 310 -2 2931 198 33 36 chr1 27388204 27388907 -254804757 + L1MB8 LINE L1 5478 6178 0 2446 107 22 25 chr1 27388954 27389319 -254804345 + THE1B LTR MaLR 1 364 0 2239 109 81 62 chr1 27389370 27389600 -254804064 - MSTA LTR MaLR 0 428 185 2128 115 7 0 chr1 27389600 27389905 -254803759 - AluSc SINE Alu -2 307 1 2239 109 81 62 chr1 27389905 27390094 -254803570 - MSTA LTR MaLR -243 185 1 2518 155 16 32 chr1 27390271 27390384 -254803280 - MSTB LTR MaLR 0 426 313 2202 106 0 6 chr1 27390384 27390696 -254802968 + AluSx SINE Alu 1 310 -2 2518 155 16 32 chr1 27390696 27391015 -254802649 - MSTB LTR MaLR -113 313 1 238 263 42 76 chr1 27391115 27391233 -254802431 - L2 LINE L2 -8 3264 3151 629 313 51 0 chr1 27391435 27391630 -254802034 + MIR SINE MIR 10 214 -48 2144 82 32 0 chr1 27391909 27392191 -254801473 + AluSg SINE Alu 1 291 -19 229 292 97 0 chr1 27392232 27392304 -254801360 + L2 LINE L2 3234 3312 -1 2272 113 0 0 chr1 27392313 27392624 -254801040 + AluSx SINE Alu 1 311 -1 1011 217 45 9 chr1 27392838 27393059 -254800605 - MIR SINE MIR 0 262 34 2393 74 0 0 chr1 27393068 27393377 -254800287 - AluY SINE Alu -2 309 1 423 231 250 45 chr1 27393562 27393718 -254799946 + MIR SINE MIR 63 250 -12 2127 115 0 0 chr1 27393718 27394022 -254799642 - AluSq SINE Alu -9 304 1 31 65 0 13 chr1 27394579 27394602 -254799062 + AT_rich Low_complexity Low_complexity 1 23 -53 1660 128 0 94 chr1 27394602 27394899 -254798765 + AluJb SINE Alu 28 296 -16 31 65 0 13 chr1 27394899 27394940 -254798724 + AT_rich Low_complexity Low_complexity 23 76 0 358 280 101 24 chr1 27395614 27395782 -254797882 + MIR SINE MIR 51 231 -31 487 279 37 19 chr1 27395829 27395990 -254797674 - MIR SINE MIR -36 226 63 248 127 36 55 chr1 27396982 27397037 -254796627 + MIR SINE MIR 79 132 -76 2468 81 3 0 chr1 27397071 27397369 -254796295 + AluSg SINE Alu 1 299 -11 2413 89 7 0 chr1 27397446 27397749 -254795915 + AluSx SINE Alu 2 306 -6 2297 107 3 7 chr1 27399208 27399518 -254794146 + AluSx SINE Alu 1 309 -3 1182 207 16 0 chr1 27400146 27400392 -254793272 + L1ME2 LINE L1 5577 5826 -340 1457 148 119 29 chr1 27400392 27400669 -254792995 + AluJo SINE Alu 1 302 -10 2112 113 3 28 chr1 27400674 27400994 -254792670 + AluSx SINE Alu 1 312 0 287 279 29 0 chr1 27400996 27401100 -254792564 + L1ME2 LINE L1 5895 6001 -163 776 198 12 12 chr1 27401107 27401269 -254792395 + L1MA10 LINE L1 6173 6334 0 21 36 0 0 chr1 27401306 27401334 -254792330 + AT_rich Low_complexity Low_complexity 1 28 0 776 194 0 0 chr1 27401339 27401463 -254792201 + FLAM_A SINE Alu 1 124 -9 2085 124 7 0 chr1 27401474 27401790 -254791874 + AluSx SINE Alu 1 318 0 2390 92 7 0 chr1 27401802 27402105 -254791559 - AluSq SINE Alu -8 305 1 658 183 73 19 chr1 27402840 27403095 -254790569 + MER63 DNA MER1_type 3 243 -818 1875 153 0 3 chr1 27403095 27403401 -254790263 - AluJb SINE Alu 0 305 1 658 183 73 19 chr1 27403401 27403451 -254790213 + MER63 DNA MER1_type 243 1014 -47 261 240 225 23 chr1 27403761 27403890 -254789774 - L3 LINE CR1 -1 1576 1422 265 247 26 26 chr1 27403890 27403967 -254789697 - L2 LINE L2 -2 3270 3194 277 314 129 26 chr1 27404021 27404180 -254789484 + MIR SINE MIR 28 212 -50 2048 116 17 3 chr1 27404180 27404473 -254789191 + AluSx SINE Alu 1 297 -15 277 314 129 26 chr1 27404473 27404507 -254789157 + MIR SINE MIR 212 241 -21 288 250 66 0 chr1 27404515 27404591 -254789073 - L3 LINE CR1 -252 1325 1245 488 282 86 41 chr1 27404612 27404832 -254788832 - MIR SINE MIR 0 262 33 468 283 11 0 chr1 27405902 27406079 -254787585 + (CA)n Simple_repeat Simple_repeat 1 179 0 2153 121 0 3 chr1 27406151 27406449 -254787215 - AluSx SINE Alu -15 297 1 350 304 6 11 chr1 27406499 27406680 -254786984 + (CA)n Simple_repeat Simple_repeat 1 180 0 238 226 8 8 chr1 27406697 27406830 -254786834 + (CA)n Simple_repeat Simple_repeat 1 133 0 359 241 43 57 chr1 27407537 27407678 -254785986 - MIR SINE MIR -118 144 6 709 293 66 5 chr1 27407858 27408070 -254785594 - MIR SINE MIR -3 259 35 2057 131 3 10 chr1 27408845 27409143 -254784521 + AluSx SINE Alu 1 296 -16 751 235 81 32 chr1 27409244 27409465 -254784199 - MIR SINE MIR 0 262 31 241 232 0 0 chr1 27410933 27410989 -254782675 + GA-rich Low_complexity Low_complexity 1 56 0 201 241 0 0 chr1 27411271 27411325 -254782339 + GA-rich Low_complexity Low_complexity 1 54 0 347 343 24 12 chr1 27412867 27413036 -254780628 + MIR SINE MIR 3 173 -89 1823 177 0 22 chr1 27413119 27413430 -254780234 - AluJb SINE Alu -8 304 1 2377 142 37 22 chr1 27413932 27414341 -254779323 + MSTB LTR MaLR 3 417 -9 2069 136 0 26 chr1 27414343 27414653 -254779011 + AluSx SINE Alu 1 302 -10 2276 108 10 0 chr1 27415411 27415706 -254777958 - AluSp SINE Alu -15 298 1 189 353 87 20 chr1 27415709 27415859 -254777805 + MIR SINE MIR 98 257 -5 2030 149 36 0 chr1 27415869 27416170 -254777494 + AluSx SINE Alu 1 312 0 587 142 236 0 chr1 27416694 27416821 -254776843 - MER58B DNA MER1_type -14 327 171 2127 81 81 3 chr1 27416821 27417106 -254776558 + AluSc SINE Alu 1 307 -2 1304 106 0 6 chr1 27417108 27417288 -254776376 + AluSg/x SINE Alu 127 305 -5 739 153 73 0 chr1 27417289 27417413 -254776251 - MER5A DNA MER1_type -56 133 1 935 249 32 16 chr1 27418992 27419047 -254774617 - MIR SINE MIR -1 261 208 2371 94 3 0 chr1 27419047 27419346 -254774318 - AluSx SINE Alu -12 300 1 935 249 32 16 chr1 27419346 27419543 -254774121 - MIR SINE MIR -54 208 5 228 161 36 18 chr1 27419691 27419747 -254773917 + MLT1I LTR MaLR 68 124 -285 2221 120 0 10 chr1 27419789 27420097 -254773567 + AluSx SINE Alu 1 305 -7 397 308 154 4 chr1 27420383 27420617 -254773047 + MLT1L LTR MaLR 342 610 -5 21 36 0 0 chr1 27420912 27420940 -254772724 + AT_rich Low_complexity Low_complexity 1 28 0 266 75 0 0 chr1 27420940 27420980 -254772684 - LTR5 LTR ERVK -164 805 766 351 192 0 14 chr1 27421166 27421239 -254772425 + L2 LINE L2 2867 2938 -334 452 222 48 87 chr1 27421241 27421448 -254772216 + L2 LINE L2 3113 3311 -2 1954 131 17 77 chr1 27421637 27421690 -254771974 - L1MB7 LINE L1 -8 6176 6121 2615 53 0 3 chr1 27421690 27421990 -254771674 + AluY SINE Alu 1 299 -12 1954 131 17 77 chr1 27421990 27422303 -254771361 - L1MB7 LINE L1 -63 6121 5833 2342 74 3 0 chr1 27422303 27422619 -254771045 - AluSp SINE Alu 0 317 1 1954 131 17 77 chr1 27422619 27422654 -254771010 - L1MB7 LINE L1 -351 5833 5797 3292 173 59 54 chr1 27422671 27423416 -254770248 - MER21B LTR ERV1 -72 791 43 379 237 0 0 chr1 27423414 27423490 -254770174 - MER21B LTR ERV1 -769 94 19 * 323 202 71 30 chr1 27423488 27423587 -254770077 - MER21B LTR ERV1 -757 106 4 * 2010 152 0 34 chr1 27423587 27423973 -254769691 + AluJb SINE Alu 1 375 0 415 226 39 0 chr1 27423973 27424075 -254769589 + MLT1C LTR MaLR 337 442 -25 2078 147 3 0 chr1 27424093 27424385 -254769279 - AluJb SINE Alu -19 293 1 271 284 125 0 chr1 27424424 27424512 -254769152 - MLT1G1 LTR MaLR -496 99 1 268 263 70 26 chr1 27424512 27424626 -254769038 - MLT1G1-int LTR MaLR 0 1371 1253 2472 96 0 0 chr1 27424626 27424929 -254768735 - AluSq SINE Alu -10 303 1 199 245 0 19 chr1 27425210 27425263 -254768401 - L3 LINE CR1 -1 1576 1525 582 203 91 0 chr1 27425263 27425406 -254768258 + L1ME3 LINE L1 5834 5989 -173 683 144 25 25 chr1 27425425 27425543 -254768121 + FLAM_A SINE Alu 19 136 -6 1885 134 76 4 chr1 27425562 27425839 -254767825 + AluSx SINE Alu 1 297 -15 428 262 131 6 chr1 27425839 27426007 -254767657 + L1ME3 LINE L1 5967 6155 -7 2255 122 0 0 chr1 27426239 27426535 -254767129 + AluSx SINE Alu 1 296 -16 1560 179 47 24 chr1 27426544 27426841 -254766823 + AluJo SINE Alu 1 304 -8 2866 7 0 3 chr1 27426845 27427152 -254766512 + AluYa5 SINE Alu 1 306 -5 2133 94 3 39 chr1 27427354 27427663 -254766001 + AluSx SINE Alu 13 310 -2 2035 138 10 0 chr1 27428030 27428321 -254765343 - AluSx SINE Alu -18 294 1 2253 109 0 16 chr1 27428974 27429287 -254764377 + AluSg SINE Alu 2 309 -1 747 247 59 36 chr1 27429300 27429427 -254764237 - MIR SINE MIR -24 238 102 1896 178 42 29 chr1 27429427 27429810 -254763854 + MLT1B LTR MaLR 1 388 -2 747 247 59 36 chr1 27429810 27429901 -254763763 - MIR SINE MIR -160 102 15 334 301 18 9 chr1 27429978 27430091 -254763573 - MIR SINE MIR -8 254 141 401 274 72 26 chr1 27430780 27430933 -254762731 - MER113 DNA MER1_type? -111 410 251 609 245 83 10 chr1 27430973 27431560 -254762104 - L1MEc LINE L1 -5178 1218 565 276 254 15 0 chr1 27431615 27431682 -254761982 - MIR SINE MIR -50 212 145 1291 253 96 49 chr1 27431685 27432195 -254761469 - L1MEc LINE L1 -5834 562 29 2160 110 10 13 chr1 27432202 27432502 -254761162 - AluSx SINE Alu -13 299 1 377 331 42 36 chr1 27432510 27432676 -254760988 - L1 LINE L1 -1665 4481 4315 437 106 0 160 chr1 27432731 27432783 -254760881 - MADE1 DNA Mariner -1 79 47 2200 117 3 0 chr1 27432783 27433082 -254760582 + AluSx SINE Alu 2 301 -11 437 106 0 160 chr1 27433082 27433123 -254760541 - MADE1 DNA Mariner -33 47 1 234 349 130 9 chr1 27433202 27433417 -254760247 - MLT1L LTR MaLR -180 435 195 1878 99 8 0 chr1 27433517 27433760 -254759904 + AluSg SINE Alu 44 288 -22 303 337 20 20 chr1 27433793 27433894 -254759770 - L1 LINE L1 -2317 3829 3729 854 121 38 8 chr1 27434039 27434171 -254759493 + AluJo SINE Alu 1 136 -176 214 264 0 0 chr1 27434210 27434263 -254759401 + A-rich Low_complexity Low_complexity 3 55 0 2090 140 0 3 chr1 27434342 27434634 -254759030 - AluSx SINE Alu -21 291 1 703 186 85 21 chr1 27434768 27434956 -254758708 + L1MC5 LINE L1 7669 7868 -93 620 124 0 170 chr1 27436117 27436270 -254757394 + FLAM_C SINE Alu 1 127 -6 2211 126 0 0 chr1 27436322 27436616 -254757048 + AluSx SINE Alu 1 294 -18 265 181 0 121 chr1 27436624 27436670 -254756994 - MIR SINE MIR 0 262 229 2047 151 0 7 chr1 27436670 27436968 -254756696 - AluJb SINE Alu -16 296 1 265 181 0 121 chr1 27436968 27437004 -254756660 - MIR SINE MIR -33 229 190 23 55 0 18 chr1 27437629 27437656 -254756008 + AT_rich Low_complexity Low_complexity 1 27 -27 2125 133 0 0 chr1 27437656 27437949 -254755715 + AluSx SINE Alu 1 293 -19 23 55 0 18 chr1 27437949 27437976 -254755688 + AT_rich Low_complexity Low_complexity 27 54 0 2479 75 0 0 chr1 27437988 27438281 -254755383 + AluSg SINE Alu 1 293 -17 2215 106 33 7 chr1 27438284 27438587 -254755077 + AluSx SINE Alu 1 311 -1 467 269 47 13 chr1 27438590 27438739 -254754925 - MIR3 SINE MIR -15 193 40 760 189 8 0 chr1 27438809 27438941 -254754723 + MER58B DNA MER1_type 207 339 -2 1647 191 14 0 chr1 27439113 27439406 -254754258 + AluJo SINE Alu 1 297 -15 2260 103 0 22 chr1 27439411 27439722 -254753942 + AluSx SINE Alu 1 304 -8 1020 146 146 38 chr1 27440023 27440236 -254753428 - MER46A DNA MER2_type 0 236 1 2159 106 0 17 chr1 27440753 27441046 -254752618 - AluSx SINE Alu -24 288 1 935 300 24 8 chr1 27441105 27441352 -254752312 - MIR SINE MIR -11 251 1 211 411 0 0 chr1 27441643 27441716 -254751948 - L2 LINE L2 -540 2774 2702 2373 104 0 0 chr1 27441903 27442202 -254751462 + AluSx SINE Alu 1 299 -13 1983 147 3 7 chr1 27442229 27442528 -254751136 - AluSx SINE Alu -14 298 1 1120 232 87 32 chr1 27443004 27443230 -254750434 - MER90 LTR ERV1 -4 610 355 2327 56 52 0 chr1 27443230 27443516 -254750148 - AluY SINE Alu -10 301 1 1120 232 87 32 chr1 27443516 27443659 -254750005 - MER90 LTR ERV1 -259 355 221 234 119 119 34 chr1 27443696 27443755 -254749909 - MER90 LTR ERV1 -549 65 2 180 268 28 70 chr1 27444154 27444225 -254749439 + MIR3 SINE MIR 87 154 -54 * 362 288 6 56 chr1 27444220 27444380 -254749284 + MER5B DNA MER1_type 27 178 0 1852 188 68 113 chr1 27445209 27445911 -254747753 + LTR8A LTR ERV1 42 712 -15 791 173 0 0 chr1 27446001 27446134 -254747530 + FLAM_C SINE Alu 1 133 0 2348 102 0 3 chr1 27446138 27446441 -254747223 - AluSg SINE Alu -8 302 1 23 0 0 0 chr1 27446441 27446464 -254747200 + AT_rich Low_complexity Low_complexity 1 23 0 490 277 140 60 chr1 27446655 27446775 -254746889 + L1MC/D LINE L1 4257 4366 -1780 2577 69 0 0 chr1 27446775 27447080 -254746584 + AluY SINE Alu 1 305 -6 490 277 140 60 chr1 27447080 27447295 -254746369 + L1MC/D LINE L1 4366 4619 -1527 683 275 25 10 chr1 27447322 27447522 -254746142 + L1MC/D LINE L1 5462 5664 -2144 882 107 101 13 chr1 27447525 27447684 -254745980 + MER4A LTR ERV1 3 175 -489 1890 102 0 0 chr1 27447696 27447941 -254745723 + AluSx SINE Alu 49 293 -19 2293 90 0 29 chr1 27448002 27448314 -254745350 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr1 27448326 27448348 -254745316 + AT_rich Low_complexity Low_complexity 1 22 0 2285 63 56 0 chr1 27448406 27448690 -254744974 + AluY SINE Alu 1 300 -11 1828 136 81 0 chr1 27448790 27449063 -254744601 + AluJb SINE Alu 6 300 -12 2160 129 0 3 chr1 27449322 27449633 -254744031 + AluSx SINE Alu 1 310 -2 926 219 325 17 chr1 27449644 27450134 -254743530 - MLT1G1 LTR MaLR 0 590 1 1062 286 102 7 chr1 27450242 27450501 -254743163 + LTR33 LTR ERVL 1 234 -287 1491 94 11 0 chr1 27450501 27450692 -254742972 - AluSq SINE Alu -120 193 1 1062 286 102 7 chr1 27450692 27450865 -254742799 + LTR33 LTR ERVL 234 474 -47 606 215 0 39 chr1 27450948 27451078 -254742586 - FLAM_C SINE Alu -6 127 3 1745 145 19 62 chr1 27451185 27451509 -254742155 - AluJo SINE Alu -2 310 1 2173 99 7 0 chr1 27451566 27451850 -254741814 + AluSx SINE Alu 1 286 -26 287 129 129 14 chr1 27452063 27452133 -254741531 - AluJ/FRAM SINE Alu -10 292 215 971 192 153 31 chr1 27453030 27453291 -254740373 + AluJo SINE Alu 1 293 -9 2124 85 89 0 chr1 27453382 27453663 -254740001 + AluSp SINE Alu 1 306 -7 2135 120 0 0 chr1 27453682 27453974 -254739690 + AluSx SINE Alu 1 292 -20 2034 64 16 4 chr1 27454034 27454283 -254739381 + AluY SINE Alu 1 252 -59 331 175 32 16 chr1 27454486 27454549 -254739115 - MER5A DNA MER1_type -80 109 46 2200 89 17 14 chr1 27455226 27455519 -254738145 + AluSg SINE Alu 2 295 -15 271 59 10 149 chr1 27456470 27456545 -254737119 - Alu SINE Alu -8 293 246 1605 159 91 0 chr1 27457107 27457371 -254736293 - AluJb SINE Alu -24 288 1 254 218 57 81 chr1 27457852 27457976 -254735688 - MER8 DNA MER2_type -2 237 117 811 133 33 40 chr1 27458311 27458462 -254735202 - AluSq/x SINE Alu -163 150 1 1224 181 165 0 chr1 27460760 27461020 -254732644 - AluSx SINE Alu -9 303 1 2236 124 0 0 chr1 27461277 27461583 -254732081 + AluSq SINE Alu 1 306 -7 2078 119 7 14 chr1 27461756 27462051 -254731613 - AluSx SINE Alu -18 294 2 2385 173 118 25 chr1 27462343 27462859 -254730805 - LTR6A LTR ERV1 0 564 1 1040 198 94 51 chr1 27462909 27463139 -254730525 + MLT1E2 LTR MaLR 1 220 -406 2378 96 0 6 chr1 27463139 27463451 -254730213 + AluSg SINE Alu 1 310 0 1040 198 94 51 chr1 27463451 27463758 -254729906 + MLT1E2 LTR MaLR 220 626 0 2365 92 7 0 chr1 27463775 27464079 -254729585 - AluSp SINE Alu -7 306 1 1375 159 9 120 chr1 27464303 27464637 -254729027 - AluJb SINE Alu -4 298 2 1499 220 63 35 chr1 27464806 27464943 -254728721 - LTR66 LTR ERVL -203 407 275 2435 83 0 3 chr1 27464943 27465245 -254728419 - AluSq SINE Alu -12 301 1 1499 220 63 35 chr1 27465245 27465503 -254728161 - LTR66 LTR ERVL -335 275 1 780 146 0 0 chr1 27465503 27465613 -254728051 - AluSq/x SINE Alu -198 115 6 256 232 16 96 chr1 27465715 27465771 -254727893 - L1MC/D LINE L1 -1994 5814 5772 2271 77 43 0 chr1 27465771 27466070 -254727594 - AluSp SINE Alu -1 312 1 256 232 16 96 chr1 27466070 27466138 -254727526 - L1MC/D LINE L1 -2036 5772 5700 2077 122 0 0 chr1 27466845 27467144 -254726520 - AluSg SINE Alu 0 299 1 3247 114 85 0 chr1 27467919 27468401 -254725263 - MER1A DNA MER1_type 0 527 5 1530 168 37 37 chr1 27468558 27468855 -254724809 - AluJo SINE Alu -9 303 7 1918 148 0 26 chr1 27468870 27469175 -254724489 - AluJb SINE Alu -15 297 1 257 280 128 55 chr1 27469603 27469821 -254723843 + L2 LINE L2 3080 3313 0 2036 137 3 35 chr1 27470008 27470321 -254723343 - AluJb SINE Alu -9 303 1 2124 131 3 0 chr1 27470591 27470888 -254722776 - AluSg SINE Alu -12 298 1 184 314 0 0 chr1 27471303 27471354 -254722310 + MIR SINE MIR 24 74 -188 345 217 0 0 chr1 27471408 27471468 -254722196 + Tigger3(Golem) DNA MER2_type 1 60 -2969 2217 110 10 7 chr1 27471503 27471803 -254721861 - AluSx SINE Alu -11 301 1 2202 110 7 17 chr1 27471913 27472214 -254721450 - AluSc SINE Alu -11 298 1 1710 161 48 65 chr1 27472983 27473210 -254720454 - MLT1B LTR MaLR 0 390 171 2430 73 0 13 chr1 27473210 27473510 -254720154 - AluSg SINE Alu -14 296 1 1710 161 48 65 chr1 27473510 27473679 -254719985 - MLT1B LTR MaLR -219 171 1 2563 72 0 0 chr1 27473809 27474113 -254719551 - AluY SINE Alu -6 305 2 2244 124 0 0 chr1 27474116 27474422 -254719242 - AluSx SINE Alu -6 306 1 211 376 40 10 chr1 27474481 27474582 -254719082 - L2 LINE L2 -17 3296 3193 640 223 149 0 chr1 27474687 27474862 -254718802 - L2 LINE L2 0 3313 3113 2275 187 67 41 chr1 27474870 27475405 -254718259 - MLT2B3 LTR ERVL -5 549 1 537 277 133 41 chr1 27475415 27475725 -254717939 - L2 LINE L2 -209 3104 2824 2159 97 100 29 chr1 27475725 27476065 -254717599 - THE1B LTR MaLR 0 364 1 12094 85 8 3 chr1 27476065 27477636 -254716028 - THE1B-int LTR MaLR 0 1580 2 537 277 133 41 chr1 27477636 27477866 -254715798 - L2 LINE L2 -488 2825 2513 1779 166 53 7 chr1 27477882 27478166 -254715498 - AluSx SINE Alu -15 297 1 1426 151 57 21 chr1 27478176 27478508 -254715156 + L1MC3 LINE L1 7368 7711 -74 954 160 61 28 chr1 27479619 27479831 -254713833 + MER20 DNA MER1_type 1 219 0 782 218 36 141 chr1 27480503 27480647 -254713017 - L2 LINE L2 -2 3311 3153 2126 122 10 0 chr1 27480647 27480935 -254712729 + AluSx SINE Alu 1 291 -21 782 218 36 141 chr1 27480935 27481076 -254712588 - L2 LINE L2 -160 3153 3069 2308 117 0 0 chr1 27481076 27481375 -254712289 + AluSq SINE Alu 1 299 -14 782 218 36 141 chr1 27481375 27481450 -254712214 - L2 LINE L2 -244 3069 2988 2018 138 29 0 chr1 27481458 27481807 -254711857 - MER47A DNA MER2_type -7 359 1 262 167 0 21 chr1 27481807 27481855 -254711809 - L2 LINE L2 -332 2981 2935 235 246 35 35 chr1 27481873 27481987 -254711677 - L1MC4 LINE L1 -1 8041 7928 188 279 0 0 chr1 27482662 27482705 -254710959 - L3 LINE CR1 -7 1570 1528 2036 106 71 31 chr1 27482709 27483031 -254710633 + MER1B DNA MER1_type 3 337 0 997 239 99 0 chr1 27483047 27483269 -254710395 + MIR SINE MIR 13 256 -6 373 243 113 75 chr1 27483296 27483588 -254710076 - L1ME4a LINE L1 -123 5998 5696 309 287 104 35 chr1 27483596 27483711 -254709953 + MIR3 SINE MIR 68 190 -18 337 289 211 7 chr1 27483734 27483876 -254709788 - L3 LINE CR1 -119 1458 1288 236 222 14 0 chr1 27483926 27483998 -254709666 + CT-rich Low_complexity Low_complexity 4 76 0 224 264 38 75 chr1 27484527 27484633 -254709031 + MIR SINE MIR 106 207 -55 287 87 0 0 chr1 27485428 27485474 -254708190 - L1PB4 LINE L1 0 6156 6111 1909 150 0 26 chr1 27485536 27485842 -254707822 - AluJo SINE Alu -14 298 1 180 0 0 0 chr1 27485895 27485915 -254707749 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 229 162 29 0 chr1 27486391 27486459 -254707205 + (CAATT)n Simple_repeat Simple_repeat 4 73 0 1043 225 72 0 chr1 27486498 27486734 -254706930 - MIR SINE MIR -1 261 9 225 314 35 23 chr1 27486769 27486855 -254706809 - MIR SINE MIR -173 89 3 214 329 66 13 chr1 27486897 27487049 -254706615 - L2 LINE L2 -181 3091 2932 327 144 0 2 chr1 27487123 27487366 -254706298 + AluSx SINE Alu 1 300 0 2173 135 6 3 chr1 27487405 27487716 -254705948 + AluSx SINE Alu 1 312 0 240 221 69 28 chr1 27487951 27488096 -254705568 - Charlie7 DNA MER1_type -47 2565 2415 999 216 59 22 chr1 27488142 27488462 -254705202 - Charlie7 DNA MER1_type -1978 634 303 471 266 74 71 chr1 27488476 27488826 -254704838 + L1MC5 LINE L1 7581 7931 -30 1408 170 0 64 chr1 27488841 27489123 -254704541 + AluJo SINE Alu 33 296 -16 22 0 0 0 chr1 27489152 27489174 -254704490 + AT_rich Low_complexity Low_complexity 1 22 0 2424 93 0 3 chr1 27489180 27489491 -254704173 + AluY SINE Alu 1 310 -1 1071 178 5 0 chr1 27489718 27489903 -254703761 + MER5A DNA MER1_type 4 189 0 559 244 125 6 chr1 27489903 27490063 -254703601 + MIR SINE MIR 36 214 -48 2437 62 10 0 chr1 27490080 27490369 -254703295 - AluSp SINE Alu -21 292 1 288 276 47 16 chr1 27490371 27490498 -254703166 - Charlie7 DNA MER1_type -2481 131 1 213 249 240 40 chr1 27490518 27490743 -254702921 - L2 LINE L2 -729 2585 2316 720 192 38 43 chr1 27490761 27490978 -254702686 - MLT1H LTR MaLR -1 550 322 195 280 40 0 chr1 27491568 27491618 -254702046 - MIR SINE MIR -87 121 70 399 338 14 14 chr1 27491629 27491771 -254701893 - MIR SINE MIR -10 252 111 759 229 137 5 chr1 27491857 27492062 -254701602 + MIR SINE MIR 2 233 -29 2418 98 0 0 chr1 27492704 27493001 -254700663 - AluSx SINE Alu -15 297 1 1898 123 4 18 chr1 27493001 27493315 -254700349 - AluJo SINE Alu -12 300 27 503 281 22 14 chr1 27493392 27493531 -254700133 - MIR3 SINE MIR -14 194 55 392 236 210 0 chr1 27494446 27494603 -254699061 - MIR SINE MIR -3 259 70 1819 105 8 8 chr1 27494625 27494892 -254698772 - AluSg SINE Alu -9 301 35 1516 111 134 19 chr1 27495036 27495298 -254698366 + AluSg SINE Alu 1 292 -18 1884 133 11 0 chr1 27495424 27495710 -254697954 + AluSq SINE Alu 12 300 -13 787 244 6 0 chr1 27495728 27495896 -254697768 + MIR SINE MIR 93 261 -1 442 278 0 9 chr1 27495895 27496003 -254697661 - MIR SINE MIR -140 122 16 * 239 292 21 0 chr1 27496252 27496348 -254697316 + MIR SINE MIR 56 153 -55 637 262 24 0 chr1 27496448 27496616 -254697048 - MIR SINE MIR 0 262 91 481 121 60 0 chr1 27497028 27497111 -254696553 - MER53 DNA DNA -79 110 23 * 492 105 93 0 chr1 27497037 27497123 -254696541 + MER53 DNA DNA 96 189 0 2274 87 3 0 chr1 27497298 27497597 -254696067 - AluSp SINE Alu -13 300 1 638 240 6 27 chr1 27497704 27497889 -254695775 + L1ME3 LINE L1 5915 6099 -67 460 289 133 12 chr1 27498074 27498240 -254695424 - MIR SINE MIR -16 246 61 1761 167 3 3 chr1 27498370 27498658 -254695006 + AluJb SINE Alu 1 288 -24 2419 57 0 0 chr1 27498668 27498967 -254694697 + AluY SINE Alu 1 299 -12 2051 129 3 0 chr1 27498975 27499277 -254694387 + AluSx SINE Alu 1 303 -9 183 156 0 0 chr1 27499310 27499342 -254694322 + (CA)n Simple_repeat Simple_repeat 2 33 0 1698 173 0 3 chr1 27499886 27500186 -254693478 - AluSx SINE Alu -13 299 1 1589 166 4 4 chr1 27500194 27500459 -254693205 - AluJb SINE Alu -25 287 23 1046 169 0 16 chr1 27500459 27500643 -254693021 - AluJo SINE Alu -131 181 1 645 293 71 10 chr1 27500725 27500923 -254692741 - MIR SINE MIR -52 210 1 220 264 104 100 chr1 27501200 27501360 -254692304 + MIR SINE MIR 18 181 -81 1812 158 0 0 chr1 27501360 27501658 -254692006 - AluSx SINE Alu -14 298 1 220 264 104 100 chr1 27501658 27501728 -254691936 + MIR SINE MIR 181 249 -13 205 219 94 31 chr1 27501838 27501902 -254691762 + L2 LINE L2 3016 3083 -189 320 278 172 18 chr1 27502162 27502329 -254691335 - MIR3 SINE MIR -63 145 9 278 243 57 0 chr1 27502533 27502603 -254691061 - MIR SINE MIR -124 138 65 333 47 0 0 chr1 27502714 27502757 -254690907 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 939 146 19 78 chr1 27503047 27503252 -254690412 + AluJo SINE Alu 22 214 -98 263 182 0 0 chr1 27503253 27503297 -254690367 + FLAM_A SINE Alu 80 123 -10 321 89 0 0 chr1 27503307 27503352 -254690312 + (CAGA)n Simple_repeat Simple_repeat 3 47 0 2167 112 0 10 chr1 27503352 27503665 -254689999 + AluSq SINE Alu 2 311 -2 471 258 17 0 chr1 27504006 27504126 -254689538 - MIR3 SINE MIR -37 171 50 689 194 73 11 chr1 27504132 27504321 -254689343 + MIR SINE MIR 5 202 -60 3259 249 150 26 chr1 27504380 27505514 -254688150 - L2 LINE L2 -528 2786 1512 30 45 0 0 chr1 27505514 27505558 -254688106 + AT_rich Low_complexity Low_complexity 1 44 0 845 250 150 33 chr1 27506832 27507222 -254686442 + L1MC4a LINE L1 5191 5534 -799 2393 66 7 0 chr1 27507222 27507525 -254686139 - AluY SINE Alu -6 305 1 845 250 150 33 chr1 27507525 27507602 -254686062 + L1MC4a LINE L1 5534 5601 -732 2348 73 3 0 chr1 27507602 27507902 -254685762 + AluSp SINE Alu 1 301 -12 2287 97 0 0 chr1 27507912 27508211 -254685453 + AluSg SINE Alu 1 299 -11 845 250 150 33 chr1 27508211 27508393 -254685271 + L1MC4a LINE L1 5456 5615 -718 292 254 164 27 chr1 27508694 27508804 -254684860 - MIR3 SINE MIR -7 201 77 2045 104 3 77 chr1 27508946 27509282 -254684382 - AluSx SINE Alu -1 311 1 297 236 38 57 chr1 27509979 27510085 -254683579 - MIR3 SINE MIR -3 205 102 599 274 246 6 chr1 27510503 27510820 -254682844 + L3 LINE CR1 947 1339 -238 2209 104 0 16 chr1 27510853 27511170 -254682494 - AluSx SINE Alu 0 312 1 700 108 17 42 chr1 27511263 27511383 -254682281 + FLAM_A SINE Alu 25 141 -1 685 319 66 4 chr1 27511413 27511639 -254682025 + L3 LINE CR1 1331 1570 -7 2102 131 0 0 chr1 27512419 27512724 -254680940 - AluY SINE Alu -6 305 1 2595 172 38 16 chr1 27513099 27513604 -254680060 + Charlie1b DNA MER1_type 1 516 -7 21 36 0 0 chr1 27514149 27514177 -254679487 + AT_rich Low_complexity Low_complexity 1 28 0 318 309 109 39 chr1 27515153 27515383 -254678281 + L1M2 LINE L1 1630 1875 -4974 1487 160 28 18 chr1 27515592 27515874 -254677790 - AluJo SINE Alu -14 298 14 1762 163 51 0 chr1 27516035 27516330 -254677334 + AluJb SINE Alu 1 310 -2 705 147 0 77 chr1 27516515 27516624 -254677040 + FLAM_A SINE Alu 8 107 -204 1922 122 0 24 chr1 27516624 27516937 -254676727 - AluSx SINE Alu 0 306 1 705 147 0 77 chr1 27516937 27516968 -254676696 + FLAM_A SINE Alu 107 139 -172 331 286 231 7 chr1 27518744 27518891 -254674773 + MER5A DNA MER1_type 10 189 0 294 270 122 78 chr1 27519139 27519422 -254674242 + L2 LINE L2 3005 3303 -10 2138 80 28 7 chr1 27519422 27519711 -254673953 + AluSq SINE Alu 1 295 -18 294 270 122 78 chr1 27519711 27519723 -254673941 + L2 LINE L2 3303 3313 0 404 165 13 0 chr1 27520029 27520108 -254673556 + Charlie1 DNA MER1_type 2454 2533 -228 2291 96 3 0 chr1 27520116 27520419 -254673245 - AluSx SINE Alu -7 305 2 641 145 23 87 chr1 27520421 27520471 -254673193 + Charlie1 DNA MER1_type 2590 2642 -119 1631 173 0 55 chr1 27520471 27520801 -254672863 - AluJo SINE Alu 0 312 1 641 145 23 87 chr1 27520801 27520875 -254672789 + Charlie1 DNA MER1_type 2642 2703 -58 2212 95 10 0 chr1 27520875 27521170 -254672494 - AluSp SINE Alu -15 298 1 641 145 23 87 chr1 27521170 27521216 -254672448 + Charlie1 DNA MER1_type 2703 2750 -11 991 185 0 0 chr1 27521487 27521671 -254671993 - AluJo SINE Alu -6 306 123 189 0 0 0 chr1 27521673 27521694 -254671970 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 322 94 0 94 chr1 27521727 27521791 -254671873 + L1MD3 LINE L1 7928 7985 -10 2134 104 19 7 chr1 27521978 27522286 -254671378 - AluSx SINE Alu 0 312 1 292 276 142 0 chr1 27522424 27522558 -254671106 + MIR SINE MIR 110 262 0 275 204 0 0 chr1 27522904 27522948 -254670716 + AluJ/monomer SINE Alu 1 44 -258 1806 146 24 3 chr1 27522974 27523262 -254670402 - AluJo SINE Alu -18 294 1 1442 184 0 70 chr1 27523454 27523770 -254669894 + AluJo SINE Alu 5 298 -14 203 267 200 11 chr1 27526421 27526511 -254667153 + L2 LINE L2 3188 3294 -19 256 246 104 82 chr1 27527136 27527270 -254666394 - MIR3 SINE MIR -63 145 9 338 210 111 0 chr1 27528390 27528471 -254665193 + L2 LINE L2 3224 3313 0 21 36 0 0 chr1 27529442 27529470 -254664194 + GC_rich Low_complexity Low_complexity 1 28 0 41 82 0 0 chr1 27529502 27529599 -254664065 + GC_rich Low_complexity Low_complexity 1 97 0 207 151 38 19 chr1 27529834 27529887 -254663777 + (CCG)n Simple_repeat Simple_repeat 3 56 0 204 40 0 0 chr1 27530836 27530861 -254662803 + (CCGGG)n Simple_repeat Simple_repeat 1 25 0 351 298 0 0 chr1 27530928 27531022 -254662642 - MIR SINE MIR -13 249 156 371 293 101 72 chr1 27531056 27531374 -254662290 - L1ME4a LINE L1 -1 6120 5794 1582 52 0 5 chr1 27531454 27531648 -254662016 + AluY SINE Alu 1 193 -118 198 0 0 0 chr1 27531663 27531685 -254661979 + (A)n Simple_repeat Simple_repeat 1 22 0 267 221 162 0 chr1 27532179 27532247 -254661417 + MIR SINE MIR 50 128 -134 219 326 41 31 chr1 27532937 27533035 -254660629 + MIR SINE MIR 33 131 -77 270 179 224 0 chr1 27533081 27533148 -254660516 - MIR SINE MIR -62 146 65 198 182 159 0 chr1 27533494 27533538 -254660126 - MIR SINE MIR -119 143 93 2137 118 0 0 chr1 27533836 27534132 -254659532 - AluSx SINE Alu -16 296 1 968 207 77 9 chr1 27534261 27534483 -254659181 - MIR SINE MIR -21 241 5 375 241 119 40 chr1 27534484 27534737 -254658927 + L1ME4a LINE L1 5823 6095 -26 716 240 113 9 chr1 27534756 27534977 -254658687 - MIR SINE MIR -1 261 18 189 307 68 11 chr1 27535316 27535404 -254658260 - MIR SINE MIR -74 188 96 677 298 87 8 chr1 27535409 27535651 -254658013 + MIR SINE MIR 2 262 0 * 1078 211 31 123 chr1 27535646 27535790 -254657874 - L2 LINE L2 -2 3311 3155 1969 128 10 0 chr1 27535790 27536078 -254657586 + AluSx SINE Alu 1 291 -21 1078 211 31 123 chr1 27536078 27536219 -254657445 - L2 LINE L2 -158 3155 3003 2087 128 0 0 chr1 27536219 27536523 -254657141 + AluSq SINE Alu 1 304 -9 1078 211 31 123 chr1 27536523 27536602 -254657062 - L2 LINE L2 -310 3003 2986 2381 150 0 0 chr1 27536602 27536968 -254656696 - MER47A DNA MER2_type 0 366 1 1078 211 31 123 chr1 27536968 27537014 -254656650 - L2 LINE L2 -327 2986 2937 244 254 35 35 chr1 27537035 27537149 -254656515 - L1MC4 LINE L1 -1 8041 7928 192 279 0 0 chr1 27537824 27537867 -254655797 - L3 LINE CR1 -7 1570 1528 1976 106 71 31 chr1 27537871 27538193 -254655471 + MER1B DNA MER1_type 3 337 0 994 242 94 0 chr1 27538209 27538432 -254655232 + MIR SINE MIR 13 256 -6 382 248 129 73 chr1 27538448 27538751 -254654913 - L1ME4a LINE L1 -106 6015 5696 305 275 110 37 chr1 27538765 27538874 -254654790 + MIR3 SINE MIR 74 190 -18 348 282 161 13 chr1 27538897 27539046 -254654618 - L3 LINE CR1 -119 1458 1288 287 192 14 0 chr1 27539096 27539169 -254654495 + CT-rich Low_complexity Low_complexity 3 76 0 235 255 38 75 chr1 27539701 27539807 -254653857 + MIR SINE MIR 106 207 -55 298 50 0 0 chr1 27540601 27540641 -254653023 - L1PB4 LINE L1 0 6156 6117 1782 152 0 13 chr1 27540709 27541011 -254652653 - AluJo SINE Alu -14 298 1 180 0 0 0 chr1 27541064 27541084 -254652580 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 250 147 29 0 chr1 27541560 27541628 -254652036 + (CAATT)n Simple_repeat Simple_repeat 4 73 0 1082 212 74 0 chr1 27541667 27541903 -254651761 - MIR SINE MIR -1 261 9 259 308 84 19 chr1 27541919 27542026 -254651638 - MIR SINE MIR -146 116 3 233 314 45 58 chr1 27542068 27542224 -254651440 - L2 LINE L2 -181 3091 2938 333 128 0 2 chr1 27542304 27542547 -254651117 + AluSx SINE Alu 1 302 0 2173 132 6 3 chr1 27542579 27542890 -254650774 + AluSx SINE Alu 1 312 0 240 211 143 8 chr1 27543125 27543258 -254650406 - Charlie7 DNA MER1_type -47 2565 2415 1000 219 60 19 chr1 27543304 27543623 -254650041 - Charlie7 DNA MER1_type -1978 634 303 504 261 71 74 chr1 27543637 27543989 -254649675 + L1MC5 LINE L1 7581 7931 -30 1421 169 0 67 chr1 27544003 27544287 -254649377 + AluJo SINE Alu 33 297 -15 22 0 0 0 chr1 27544316 27544338 -254649326 + AT_rich Low_complexity Low_complexity 1 22 0 2492 93 0 0 chr1 27544344 27544655 -254649009 + AluY SINE Alu 1 311 0 1111 168 5 0 chr1 27544883 27545068 -254648596 + MER5A DNA MER1_type 4 189 0 559 244 125 6 chr1 27545068 27545228 -254648436 + MIR SINE MIR 36 214 -48 2513 55 10 0 chr1 27545245 27545536 -254648128 - AluSp SINE Alu -19 294 1 288 276 47 16 chr1 27545538 27545665 -254647999 - Charlie7 DNA MER1_type -2481 131 1 211 261 234 40 chr1 27545685 27545911 -254647753 - L2 LINE L2 -729 2585 2316 734 186 38 43 chr1 27545929 27546146 -254647518 - MLT1H LTR MaLR -1 550 322 195 280 40 0 chr1 27546736 27546786 -254646878 - MIR SINE MIR -87 121 70 397 338 14 14 chr1 27546797 27546939 -254646725 - MIR SINE MIR -10 252 111 737 234 137 5 chr1 27547025 27547230 -254646434 + MIR SINE MIR 2 233 -29 2377 90 3 0 chr1 27547874 27548164 -254645500 - AluSx SINE Alu -21 291 1 2074 147 3 10 chr1 27548164 27548476 -254645188 - AluJo SINE Alu -2 310 1 489 288 22 14 chr1 27548553 27548692 -254644972 - MIR3 SINE MIR -14 194 55 338 286 119 0 chr1 27549607 27549733 -254643931 - MIR SINE MIR -3 259 119 1960 94 0 8 chr1 27549781 27550063 -254643601 - AluSg SINE Alu 0 310 35 1595 126 133 19 chr1 27550207 27550470 -254643194 + AluSg SINE Alu 1 293 -17 910 302 36 4 chr1 27550649 27550710 -254642954 + MIR SINE MIR 6 64 -198 2321 116 0 0 chr1 27550710 27551011 -254642653 + AluSq SINE Alu 1 301 -12 910 302 36 4 chr1 27551011 27551197 -254642467 + MIR SINE MIR 64 261 -1 410 311 0 8 chr1 27551196 27551318 -254642346 - MIR SINE MIR -140 122 2 * 235 302 21 0 chr1 27551553 27551649 -254642015 + MIR SINE MIR 56 153 -55 655 256 24 0 chr1 27551749 27551917 -254641747 - MIR SINE MIR 0 262 91 484 143 48 0 chr1 27552329 27552413 -254641251 - MER53 DNA DNA -79 110 23 * 496 115 81 0 chr1 27552338 27552425 -254641239 + MER53 DNA DNA 96 189 0 2385 101 3 0 chr1 27552595 27552901 -254640763 - AluSp SINE Alu -6 307 1 583 239 7 27 chr1 27553004 27553188 -254640476 + L1ME3 LINE L1 5913 6089 -75 483 283 133 12 chr1 27553388 27553554 -254640110 - MIR SINE MIR -16 246 61 1940 156 3 3 chr1 27553684 27553972 -254639692 + AluJb SINE Alu 1 288 -24 2442 79 0 0 chr1 27553982 27554286 -254639378 + AluY SINE Alu 1 304 -7 2243 129 0 0 chr1 27554294 27554597 -254639067 + AluSx SINE Alu 1 303 -9 342 138 0 0 chr1 27554630 27554688 -254638976 + (CA)n Simple_repeat Simple_repeat 2 59 0 2007 151 0 3 chr1 27555232 27555536 -254638128 - AluSx SINE Alu -9 303 1 1655 175 4 4 chr1 27555546 27555809 -254637855 - AluJb SINE Alu -27 285 23 1148 153 0 42 chr1 27555809 27555998 -254637666 - AluJo SINE Alu -131 181 1 656 308 66 5 chr1 27556080 27556278 -254637386 - MIR SINE MIR -52 210 1 258 282 113 57 chr1 27556555 27556679 -254636985 + MIR SINE MIR 18 148 -114 2250 125 0 0 chr1 27556716 27557021 -254636643 - AluSx SINE Alu -7 305 1 208 219 94 31 chr1 27557201 27557265 -254636399 + L2 LINE L2 3016 3083 -189 326 278 172 18 chr1 27557528 27557695 -254635969 - MIR3 SINE MIR -63 145 9 283 243 57 0 chr1 27557899 27557969 -254635695 - MIR SINE MIR -124 138 65 258 32 0 0 chr1 27558081 27558112 -254635552 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 999 153 19 77 chr1 27558402 27558611 -254635053 + AluJo SINE Alu 22 218 -94 231 158 0 0 chr1 27558614 27558652 -254635012 + Alu SINE Alu 86 123 -10 563 120 0 20 chr1 27558652 27558730 -254634934 + (TAGA)n Simple_repeat Simple_repeat 1 78 -20 2297 128 0 0 chr1 27558730 27559043 -254634621 + AluSq SINE Alu 1 313 0 563 120 0 20 chr1 27559043 27559064 -254634600 + (TAGA)n Simple_repeat Simple_repeat 78 98 0 464 267 17 0 chr1 27559385 27559505 -254634159 - MIR3 SINE MIR -37 171 50 663 207 72 11 chr1 27559511 27559703 -254633961 + MIR SINE MIR 5 205 -57 3305 247 152 23 chr1 27559759 27560888 -254632776 - L2 LINE L2 -528 2786 1512 36 40 0 0 chr1 27560888 27560938 -254632726 + AT_rich Low_complexity Low_complexity 1 50 0 784 301 92 40 chr1 27562199 27562700 -254630964 - L2 LINE L2 -1790 1524 998 754 208 13 103 chr1 27562689 27562943 -254630721 + MIR SINE MIR 16 241 -21 * 707 271 164 18 chr1 27562996 27563380 -254630284 - L2 LINE L2 -2387 927 488 2301 110 0 0 chr1 27563393 27563692 -254629972 - AluSq SINE Alu -14 299 1 3170 169 69 36 chr1 27563746 27563769 -254629895 - L1MC4 LINE L1 -190 7852 7831 2261 124 7 0 chr1 27563769 27564075 -254629589 - AluSx SINE Alu -4 308 1 3170 169 69 36 chr1 27564075 27564089 -254629575 - L1MC4 LINE L1 -211 7831 7819 1663 155 106 29 chr1 27564089 27564264 -254629400 + THE1C LTR MaLR 1 161 -214 204 40 0 0 chr1 27564264 27564289 -254629375 + (TC)n Simple_repeat Simple_repeat 1 25 0 1663 155 106 29 chr1 27564289 27564461 -254629203 + THE1C LTR MaLR 161 375 0 3170 169 69 36 chr1 27564461 27565203 -254628461 - L1MC4 LINE L1 -223 7819 7046 765 288 100 42 chr1 27566203 27566533 -254627131 - L2 LINE L2 0 3313 2965 681 214 22 39 chr1 27566554 27566618 -254627046 - MER97a DNA MER1_type? -715 179 115 2198 103 3 0 chr1 27566618 27566932 -254626732 + AluSx SINE Alu 1 312 0 681 214 22 39 chr1 27566932 27567045 -254626619 - MER97a DNA MER1_type? -779 115 5 1386 225 37 42 chr1 27567096 27567267 -254626397 - L2 LINE L2 -426 2888 2718 2184 120 7 0 chr1 27567267 27567568 -254626096 - AluSx SINE Alu -9 303 1 1386 225 37 42 chr1 27567568 27567774 -254625890 - L2 LINE L2 -596 2718 2513 2098 147 27 0 chr1 27568044 27568344 -254625320 + AluJo SINE Alu 1 308 -4 2048 95 4 0 chr1 27568346 27568608 -254625056 + AluSx SINE Alu 1 263 -49 2358 103 0 6 chr1 27569420 27569732 -254623932 + AluSx SINE Alu 1 310 -2 220 250 0 17 chr1 27569762 27569822 -254623842 + MIR SINE MIR 88 146 -62 308 145 60 145 chr1 27570449 27570566 -254623098 + L1MEd LINE L1 724 830 -5289 360 249 3 0 chr1 27570569 27570647 -254623017 + MIR SINE MIR 76 145 -63 486 237 8 46 chr1 27571198 27571329 -254622335 - MIR SINE MIR 0 262 137 889 165 0 0 chr1 27571333 27571466 -254622198 + FLAM_C SINE Alu 1 133 0 611 157 23 3 chr1 27572788 27572801 -254620863 + L1MA4 LINE L1 5767 5778 -408 2024 111 54 0 chr1 27572801 27573080 -254620584 + AluSx SINE Alu 1 294 -18 611 157 23 3 chr1 27573080 27573201 -254620463 + L1MA4 LINE L1 5778 5901 -285 251 71 24 0 chr1 27573424 27573466 -254620198 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 400 290 17 51 chr1 27573554 27573730 -254619934 - L2 LINE L2 -194 3078 2909 1232 109 0 12 chr1 27573850 27574027 -254619637 - AluSg/x SINE Alu 0 306 128 333 0 0 0 chr1 27574027 27574064 -254619600 + (TG)n Simple_repeat Simple_repeat 2 38 0 2115 99 0 7 chr1 27574065 27574368 -254619296 - AluY SINE Alu 0 301 1 894 165 24 0 chr1 27574597 27574767 -254618897 + MER20 DNA MER1_type 29 202 -17 562 238 191 0 chr1 27574785 27574932 -254618732 + MER5A DNA MER1_type 9 183 -6 408 207 87 73 chr1 27575537 27575687 -254617977 + MIR SINE MIR 67 218 -44 353 293 147 6 chr1 27575977 27576134 -254617530 - MIR SINE MIR -15 247 69 293 330 9 36 chr1 27576345 27576457 -254617207 + MIR3 SINE MIR 50 158 -50 370 320 77 0 chr1 27576531 27576687 -254616977 - Charlie8 DNA MER1_type -2205 212 45 825 171 43 43 chr1 27576728 27576915 -254616749 + MER5A DNA MER1_type 3 189 0 870 230 29 24 chr1 27576943 27577152 -254616512 + MER63A DNA MER1_type 1 210 0 401 290 57 0 chr1 27577281 27577422 -254616242 + MIR SINE MIR 33 185 -58 796 241 155 24 chr1 27577699 27578113 -254615551 - MER113 DNA MER1_type? -50 471 4 306 315 54 27 chr1 27578123 27578272 -254615392 + MIR SINE MIR 31 183 -79 290 241 81 0 chr1 27578467 27578554 -254615110 - L1ME3A LINE L1 -18 6152 6059 366 169 84 0 chr1 27578556 27578639 -254615025 - L1ME3A LINE L1 -159 6011 5922 1090 212 125 39 chr1 27578643 27579002 -254614662 + MSTD LTR MaLR 5 394 -2 4423 222 206 42 chr1 27579006 27579149 -254614515 + MSTD-int LTR MaLR 2 120 -1615 2300 122 0 3 chr1 27579149 27579461 -254614203 + AluSq SINE Alu 1 311 -2 4423 222 206 42 chr1 27579461 27579835 -254613829 + MSTD-int LTR MaLR 120 431 -1304 1506 61 0 0 chr1 27579835 27580015 -254613649 + AluY SINE Alu 130 309 -2 4423 222 206 42 chr1 27580015 27580931 -254612733 + MSTD-int LTR MaLR 431 1671 -64 1905 154 7 17 chr1 27580935 27581234 -254612430 + AluJo SINE Alu 7 302 -10 1226 155 0 0 chr1 27581236 27581410 -254612254 + AluJo/FRAM SINE Alu 135 308 -4 405 0 0 0 chr1 27581410 27581455 -254612209 + (TA)n Simple_repeat Simple_repeat 1 45 0 270 123 185 0 chr1 27581455 27581520 -254612144 + MSTD-int LTR MaLR 1659 1735 0 1211 224 115 33 chr1 27581520 27581886 -254611778 + MSTD LTR MaLR 1 396 0 451 148 40 30 chr1 27581886 27581987 -254611677 - L1ME3A LINE L1 -244 5926 5825 239 244 67 52 chr1 27582068 27582203 -254611461 - MER74B LTR ERVL -71 551 415 257 216 0 0 chr1 27582368 27582419 -254611245 - MER74B LTR ERVL -569 53 3 1521 221 96 24 chr1 27582432 27582983 -254610681 - L1ME3A LINE L1 -367 5803 5190 1849 158 10 39 chr1 27582983 27583293 -254610371 - AluSx SINE Alu -11 301 1 1521 221 96 24 chr1 27583293 27583412 -254610252 - L1ME3A LINE L1 -980 5190 5081 377 96 0 6 chr1 27583417 27583656 -254610008 + AluSc SINE Alu 7 292 -7 237 203 62 16 chr1 27583743 27583807 -254609857 - L2 LINE L2 -1 3271 3205 2446 94 0 0 chr1 27583966 27584274 -254609390 - AluY SINE Alu -3 308 1 235 274 32 53 chr1 27584308 27584403 -254609261 - MIR SINE MIR -66 196 104 2117 121 50 0 chr1 27584816 27585113 -254608551 + AluSx SINE Alu 1 312 0 537 221 2 10 chr1 27585123 27585239 -254608425 - MIR SINE MIR -77 131 15 309 289 119 25 chr1 27585665 27585824 -254607840 - MIR3 SINE MIR -7 201 28 1677 263 50 12 chr1 27585898 27586410 -254607254 - L2 LINE L2 -5 3308 2778 1793 111 4 0 chr1 27586519 27586753 -254606911 + AluSq SINE Alu 1 235 -78 2085 119 41 0 chr1 27586786 27587079 -254606585 + AluSx SINE Alu 1 305 -7 426 245 28 19 chr1 27587208 27587314 -254606350 + MIR3 SINE MIR 83 189 -19 248 182 0 0 chr1 27587543 27587587 -254606077 + MER53 DNA DNA 146 189 0 1774 160 24 11 chr1 27587816 27588103 -254605561 + AluJb SINE Alu 11 301 -11 2508 67 3 0 chr1 27588371 27588669 -254604995 - AluSp SINE Alu -14 299 1 1914 176 0 7 chr1 27589234 27589535 -254604129 + AluJb SINE Alu 1 299 -13 2016 121 3 28 chr1 27589851 27590185 -254603479 + AluSx SINE Alu 1 327 0 260 272 114 76 chr1 27590760 27590868 -254602796 - MIR3 SINE MIR -5 203 86 2345 101 0 7 chr1 27590868 27591176 -254602488 + AluSx SINE Alu 1 306 -6 260 272 114 76 chr1 27591176 27591225 -254602439 - MIR3 SINE MIR -122 86 40 225 265 0 15 chr1 27591577 27591645 -254602019 - MIR3 SINE MIR -130 78 12 246 174 0 0 chr1 27591751 27591797 -254601867 + CT-rich Low_complexity Low_complexity 1 46 0 955 252 8 59 chr1 27591798 27591846 -254601818 - L1ME1 LINE L1 -6 6172 6123 2236 114 0 0 chr1 27591846 27592143 -254601521 + AluSx SINE Alu 1 297 -15 955 252 8 59 chr1 27592143 27592162 -254601502 - L1ME1 LINE L1 -55 6123 6105 4279 79 9 2 chr1 27592162 27592722 -254600942 - LTR6A LTR ERV1 0 564 1 955 252 8 59 chr1 27592722 27592918 -254600746 - L1ME1 LINE L1 -73 6105 5942 1887 159 0 7 chr1 27592918 27593213 -254600451 - AluJb SINE Alu -19 293 1 955 252 8 59 chr1 27593213 27593329 -254600335 - L1ME1 LINE L1 -236 5942 5822 191 271 125 10 chr1 27593461 27593557 -254600107 - L2 LINE L2 0 3313 3207 1474 264 50 12 chr1 27593773 27594275 -254599389 - L2 LINE L2 -6 3307 2788 1545 124 44 0 chr1 27594393 27594618 -254599046 + AluSq SINE Alu 1 235 -78 2162 130 7 0 chr1 27594658 27594957 -254598707 + AluSx SINE Alu 1 301 -11 399 262 28 9 chr1 27595088 27595195 -254598469 + MIR3 SINE MIR 81 189 -19 265 182 0 0 chr1 27595423 27595467 -254598197 + MER53 DNA DNA 146 189 0 1795 153 25 0 chr1 27595690 27595971 -254597693 + AluJb SINE Alu 11 298 -14 2420 83 3 0 chr1 27596242 27596544 -254597120 - AluSp SINE Alu -10 303 1 1830 179 0 7 chr1 27597106 27597407 -254596257 + AluJb SINE Alu 1 299 -13 2087 113 0 31 chr1 27597725 27598061 -254595603 + AluSx SINE Alu 1 327 0 217 280 149 0 chr1 27598634 27598741 -254594923 - MIR3 SINE MIR -5 203 81 2254 114 0 0 chr1 27598742 27599039 -254594625 + AluSx SINE Alu 1 297 -15 413 271 0 39 chr1 27599040 27599058 -254594606 - L1MA10 LINE L1 -42 6292 5712 4501 76 2 0 chr1 27599058 27599621 -254594043 - LTR6A LTR ERV1 0 564 1 939 250 14 45 chr1 27599621 27599817 -254593847 - L1ME1 LINE L1 -47 6119 5942 1877 163 0 7 chr1 27599817 27600112 -254593552 - AluJb SINE Alu -19 293 1 939 250 14 45 chr1 27600112 27600245 -254593419 - L1ME1 LINE L1 -224 5942 5806 220 311 27 14 chr1 27600361 27600435 -254593229 - L2 LINE L2 0 3313 3239 876 184 6 19 chr1 27600493 27600651 -254593013 + FRAM SINE Alu 1 156 -10 236 245 174 31 chr1 27600817 27600915 -254592749 + MIR SINE MIR 92 203 -59 460 284 32 42 chr1 27601044 27601115 -254592549 - MIR SINE MIR -44 218 148 2109 130 0 13 chr1 27601115 27601415 -254592249 + AluSx SINE Alu 3 298 -14 460 284 32 42 chr1 27601415 27601533 -254592131 - MIR SINE MIR -114 148 31 2159 122 14 0 chr1 27602127 27602423 -254591241 - AluSx SINE Alu -12 300 1 2091 112 0 4 chr1 27602587 27602865 -254590799 + AluSx SINE Alu 20 296 -16 2227 113 0 0 chr1 27603528 27603829 -254589835 + AluSx SINE Alu 1 301 -11 1078 113 21 77 chr1 27603836 27604030 -254589634 + AluSg/x SINE Alu 125 307 -5 442 183 87 0 chr1 27604096 27604200 -254589464 + MIR SINE MIR 33 145 -63 329 248 261 0 chr1 27604216 27604369 -254589295 + MIR SINE MIR 19 211 -51 636 262 165 61 chr1 27604494 27604562 -254589102 + L3 LINE CR1 1209 1269 -308 2134 97 16 38 chr1 27604562 27604882 -254588782 + AluSq SINE Alu 1 313 0 636 262 165 61 chr1 27604882 27605141 -254588523 + L3 LINE CR1 1269 1570 -7 368 217 0 0 chr1 27605493 27605553 -254588111 + Tigger3(Golem) DNA MER2_type 1 60 -2969 2274 112 10 3 chr1 27605590 27605895 -254587769 - AluSx SINE Alu -5 307 1 2214 103 7 17 chr1 27606005 27606307 -254587357 - AluSc SINE Alu -10 299 1 1687 161 48 65 chr1 27607078 27607305 -254586359 - MLT1B LTR MaLR 0 390 171 2523 71 0 13 chr1 27607305 27607615 -254586049 - AluSg SINE Alu -4 306 1 1687 161 48 65 chr1 27607615 27607784 -254585880 - MLT1B LTR MaLR -219 171 1 1373 88 0 0 chr1 27607914 27608085 -254585579 - AluY SINE Alu -8 303 133 2714 36 0 3 chr1 27608085 27608389 -254585275 - AluY SINE Alu -7 304 2 2107 125 14 0 chr1 27608392 27608687 -254584977 - AluSx SINE Alu -13 299 1 523 240 149 0 chr1 27608954 27609129 -254584535 - L2 LINE L2 0 3313 3113 2421 189 67 39 chr1 27609137 27609671 -254583993 - MLT2B3 LTR ERVL -5 549 1 458 279 136 34 chr1 27609681 27609991 -254583673 - L2 LINE L2 -209 3104 2827 2073 97 103 30 chr1 27609991 27610330 -254583334 - THE1B LTR MaLR 0 364 1 11836 86 10 4 chr1 27610330 27611900 -254581764 - THE1B-int LTR MaLR 0 1580 2 458 279 136 34 chr1 27611900 27612080 -254581584 - L2 LINE L2 -485 2828 2562 1786 158 53 7 chr1 27612149 27612434 -254581230 - AluSx SINE Alu -14 298 1 1500 151 60 21 chr1 27612444 27612775 -254580889 + L1MC3 LINE L1 7368 7711 -74 912 160 61 28 chr1 27613888 27614100 -254579564 + MER20 DNA MER1_type 1 219 0 27 0 0 0 chr1 27615405 27615432 -254578232 + AT_rich Low_complexity Low_complexity 1 27 0 2298 110 3 0 chr1 27616276 27616586 -254577078 - AluSx SINE Alu -1 311 1 512 94 0 0 chr1 27617321 27617385 -254576279 + U6 snRNA snRNA 1 64 -43 22 0 0 0 chr1 27617543 27617565 -254576099 + AT_rich Low_complexity Low_complexity 1 22 0 2218 65 44 7 chr1 27617602 27617896 -254575768 - AluY SINE Alu -6 305 1 1035 89 0 0 chr1 27617905 27618029 -254575635 - AluSp SINE Alu -189 124 1 1608 157 20 56 chr1 27618050 27618356 -254575308 - AluJb SINE Alu -17 295 1 234 270 18 63 chr1 27619516 27619627 -254574037 - HAL1 LINE L1 -8 2499 2394 689 279 158 35 chr1 27619716 27619920 -254573744 - L2 LINE L2 -4 3309 3131 798 138 49 0 chr1 27619920 27620043 -254573621 - FLAM_C SINE Alu -4 129 1 689 279 158 35 chr1 27620043 27620316 -254573348 - L2 LINE L2 -182 3131 2763 1708 164 38 17 chr1 27620316 27620603 -254573061 + AluJb SINE Alu 1 293 -19 689 279 158 35 chr1 27620603 27620696 -254572968 - L2 LINE L2 -550 2763 2683 844 147 0 22 chr1 27620895 27621031 -254572633 - FLAM_C SINE Alu 0 133 1 198 91 0 0 chr1 27621051 27621084 -254572580 + (T)n Simple_repeat Simple_repeat 1 33 0 278 241 169 55 chr1 27621188 27621424 -254572240 - HAL1 LINE L1 -431 2076 1814 186 43 0 0 chr1 27621469 27621492 -254572172 + (T)n Simple_repeat Simple_repeat 1 23 0 2130 108 0 23 chr1 27621514 27621650 -254572014 + AluSx SINE Alu 1 139 -173 2271 104 0 0 chr1 27621650 27621948 -254571716 + AluY SINE Alu 1 298 -13 2130 108 0 23 chr1 27621948 27622117 -254571547 + AluSx SINE Alu 139 299 -13 502 268 98 38 chr1 27622281 27622464 -254571200 + L3 LINE CR1 1377 1570 -7 340 319 43 0 chr1 27623134 27623250 -254570414 + MIR3 SINE MIR 76 196 -12 2236 104 3 3 chr1 27624761 27625060 -254568604 - AluSx SINE Alu -13 299 1 212 0 36 0 chr1 27625217 27625245 -254568419 + (TTTTC)n Simple_repeat Simple_repeat 1 29 0 502 231 0 0 chr1 27625246 27625350 -254568314 - U13 snRNA snRNA 0 104 1 1519 192 7 18 chr1 27625381 27625667 -254567997 - AluJo SINE Alu -25 287 5 22 35 0 0 chr1 27625673 27625702 -254567962 + AT_rich Low_complexity Low_complexity 1 29 0 2048 144 3 3 chr1 27625709 27626014 -254567650 + AluSx SINE Alu 1 305 -7 407 225 146 17 chr1 27626027 27626205 -254567459 - L1ME3 LINE L1 -24 6138 5938 2247 117 0 7 chr1 27626210 27626510 -254567154 - AluSx SINE Alu -14 298 1 2362 82 3 3 chr1 27627377 27627671 -254565993 + AluSc SINE Alu 1 294 -15 252 178 30 56 chr1 27628102 27628216 -254565448 + L1MD3 LINE L1 6624 6733 -1081 474 254 0 75 chr1 27628584 27628598 -254565066 - L2 LINE L2 0 3313 3300 779 200 0 0 chr1 27628598 27628728 -254564936 - FLAM_C SINE Alu -3 130 1 474 254 0 75 chr1 27628728 27628886 -254564778 - L2 LINE L2 -13 3300 3154 2147 110 10 7 chr1 27629369 27629661 -254564003 - AluSp SINE Alu -20 293 1 698 229 18 12 chr1 27629663 27629829 -254563835 - MER5A DNA MER1_type -5 184 18 2394 69 0 13 chr1 27629853 27630156 -254563508 + AluY SINE Alu 1 299 -12 1715 153 0 19 chr1 27630231 27630499 -254563165 + AluJo SINE Alu 34 296 -16 2425 83 0 3 chr1 27631187 27631489 -254562175 + AluY SINE Alu 1 301 -10 1344 180 13 4 chr1 27632260 27632493 -254561171 - AluJo SINE Alu -15 297 63 2076 130 10 7 chr1 27632955 27633263 -254560401 - AluJb SINE Alu -3 309 1 1611 191 3 0 chr1 27633327 27633615 -254560049 + AluJo SINE Alu 24 312 0 2166 98 0 0 chr1 27633779 27634045 -254559619 - AluSq SINE Alu -47 266 1 634 506 35 4 chr1 27634074 27634305 -254559359 + AluSg/x SINE Alu 75 312 0 943 167 18 0 chr1 27634408 27634576 -254559088 + AluSg/x SINE Alu 140 310 0 1659 211 79 38 chr1 27635057 27635616 -254558048 + L2 LINE L2 2381 2962 -352 419 259 28 28 chr1 27635738 27635846 -254557818 + L2 LINE L2 3201 3308 -5 473 88 24 48 chr1 27636769 27636894 -254556770 + (TG)n Simple_repeat Simple_repeat 2 123 0 2193 91 3 7 chr1 27636896 27637181 -254556483 - AluSg SINE Alu -26 284 1 2374 94 0 0 chr1 27637192 27637491 -254556173 - AluY SINE Alu -12 299 1 257 301 0 41 chr1 27637582 27637655 -254556009 + Charlie4 DNA MER1_type 1888 1957 -4 1342 107 0 0 chr1 27638130 27638299 -254555365 - AluJo SINE Alu -143 169 1 1528 91 55 9 chr1 27638659 27638879 -254554785 + MER30 DNA MER1_type 1 230 0 2508 65 0 0 chr1 27639313 27639605 -254554059 + AluY SINE Alu 1 292 -19 227 79 26 0 chr1 27840541 27840579 -254353085 + (TA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr1 27840582 27840613 -254353051 + AT_rich Low_complexity Low_complexity 1 31 0 451 88 0 0 chr1 27841760 27841817 -254351847 - Alu SINE Alu -260 58 2 554 335 30 6 chr1 27842820 27842987 -254350677 + MIR SINE MIR 48 218 -44 242 282 51 92 chr1 27843090 27843285 -254350379 - L2 LINE L2 -314 2958 2774 495 0 0 0 chr1 27843332 27843387 -254350277 + (TA)n Simple_repeat Simple_repeat 2 56 0 322 244 33 22 chr1 27843432 27843522 -254350142 + MIR SINE MIR 16 106 -102 587 285 43 5 chr1 27843523 27843730 -254349934 - LTR16C LTR ERVL -1 490 276 698 108 0 0 chr1 27843745 27843838 -254349826 + FRAM SINE Alu 54 146 -30 189 147 0 0 chr1 27843846 27843880 -254349784 + (GGGAA)n Simple_repeat Simple_repeat 4 37 0 298 250 14 0 chr1 27843899 27843971 -254349693 - L2 LINE L2 -229 3084 3012 364 241 117 22 chr1 27843975 27844112 -254349552 - MIR SINE MIR -4 258 109 550 96 14 0 chr1 27844215 27844288 -254349376 - AluS SINE Alu -238 75 2 431 205 162 0 chr1 27844649 27844766 -254348898 + MER69 DNA AcHobo 1 136 -2390 1639 122 125 21 chr1 27844769 27845048 -254348616 - AluSg SINE Alu -2 308 1 417 134 30 0 chr1 27845052 27845119 -254348545 + MER69 DNA AcHobo 2456 2524 -2 809 229 39 0 chr1 27845160 27845339 -254348325 - MIR SINE MIR -60 202 17 2191 124 27 0 chr1 27845445 27845744 -254347920 - AluSc SINE Alu -2 307 1 2592 184 24 20 chr1 27845836 27846379 -254347285 + MER90 LTR ERV1 70 614 0 256 286 68 68 chr1 27846439 27846659 -254347005 + L1ME3 LINE L1 5943 6162 0 1788 135 54 0 chr1 27846677 27846937 -254346727 + AluSx SINE Alu 7 280 -32 318 310 34 116 chr1 27848124 27848392 -254345272 + L2 LINE L2 2958 3203 -69 494 216 61 13 chr1 27849497 27849673 -254343991 + MIR SINE MIR 28 207 -55 432 248 35 120 chr1 27850371 27850425 -254343239 - MIR SINE MIR -51 211 154 2082 60 0 15 chr1 27850425 27850690 -254342974 - AluY SINE Alu -17 294 34 432 248 35 120 chr1 27850690 27850707 -254342957 - MIR SINE MIR -108 154 137 1663 193 0 30 chr1 27850707 27851007 -254342657 - AluJb SINE Alu -21 291 1 432 248 35 120 chr1 27851007 27851132 -254342532 - MIR SINE MIR -125 137 34 194 277 31 15 chr1 27851352 27851417 -254342247 - L2 LINE L2 -4 3309 3244 341 213 265 7 chr1 27851579 27851715 -254341949 - MER5A DNA MER1_type 0 189 19 609 276 71 10 chr1 27852471 27852654 -254341010 - MIR SINE MIR -6 256 64 1853 127 42 7 chr1 27852654 27852938 -254340726 + AluJb SINE Alu 6 299 -13 254 320 124 10 chr1 27853579 27853676 -254339988 + MIR SINE MIR 33 140 -68 200 316 0 0 chr1 27853714 27853771 -254339893 + MIR3 SINE MIR 143 199 -9 582 314 80 50 chr1 27853871 27854333 -254339331 - MLT1K LTR MaLR 0 476 1 698 247 97 16 chr1 27854372 27854558 -254339106 + MIR SINE MIR 37 237 -25 827 160 0 0 chr1 27854850 27854975 -254338689 + FLAM_C SINE Alu 1 125 -18 392 241 196 0 chr1 27855051 27855163 -254338501 + MIR SINE MIR 12 145 -117 2028 133 13 0 chr1 27855165 27855466 -254338198 - AluSx SINE Alu -7 305 1 33 0 0 0 chr1 27855466 27855499 -254338165 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr1 27855718 27855739 -254337925 + (A)n Simple_repeat Simple_repeat 1 21 0 215 31 31 0 chr1 27855829 27855861 -254337803 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2146 128 0 0 chr1 27855865 27856154 -254337510 - AluSx SINE Alu -23 289 1 1938 125 0 72 chr1 27856221 27856541 -254337123 - AluJo SINE Alu -15 297 1 805 184 0 7 chr1 27856541 27856677 -254336987 - AluJo SINE Alu -177 135 1 547 254 41 75 chr1 27856719 27856864 -254336800 + MIR SINE MIR 1 134 -128 2166 121 20 0 chr1 27856864 27857161 -254336503 + AluSx SINE Alu 1 303 -9 547 254 41 75 chr1 27857161 27857283 -254336381 + MIR SINE MIR 134 259 -3 2382 97 0 0 chr1 27857426 27857736 -254335928 - AluSx SINE Alu -2 310 1 427 281 34 27 chr1 27857738 27857884 -254335780 - MIR3 SINE MIR -61 147 1 322 238 163 81 chr1 27858221 27858258 -254335406 - MIR3 SINE MIR -11 197 164 2229 119 10 7 chr1 27858258 27858568 -254335096 + AluSx SINE Alu 1 311 -1 322 238 163 81 chr1 27858568 27858690 -254334974 - MIR3 SINE MIR -44 164 25 366 230 26 80 chr1 27858863 27858976 -254334688 + MIR SINE MIR 2 108 -154 * 469 317 14 0 chr1 27858973 27859118 -254334546 - MIR SINE MIR 0 262 116 2464 90 0 0 chr1 27859142 27859441 -254334223 - AluSg SINE Alu -11 299 1 1848 148 14 3 chr1 27859585 27859869 -254333795 - AluJb SINE Alu -25 287 1 475 167 0 0 chr1 27859871 27859949 -254333715 - AluJo SINE Alu -5 307 230 2589 128 54 76 chr1 27859949 27860450 -254333214 - LTR2B LTR ERV1 0 490 1 688 141 0 25 chr1 27860450 27860571 -254333093 - Harlequin LTR ERV1 0 6896 6779 * 2999 92 7 26 chr1 27860565 27861021 -254332643 - Harlequin LTR ERV1 -1186 5710 5264 605 191 0 0 chr1 27861023 27861117 -254332547 - AluJo SINE Alu -84 228 135 * 622 157 0 0 chr1 27861113 27861215 -254332449 - AluJo SINE Alu -209 103 2 442 229 14 36 chr1 27861522 27861662 -254332002 - HAL1 LINE L1 -898 1609 1473 2241 120 0 0 chr1 27861693 27861993 -254331671 - AluSx SINE Alu -12 300 1 1969 130 33 7 chr1 27862085 27862386 -254331278 + AluSc SINE Alu 1 309 0 687 128 6 2 chr1 27862432 27862599 -254331065 + MSTC LTR MaLR 231 428 0 1735 184 27 32 chr1 27864029 27864398 -254329266 - MLT1A2 LTR MaLR 0 374 8 656 250 50 144 chr1 27864399 27864575 -254329089 - L1ME4a LINE L1 -21 6100 5909 2158 101 21 0 chr1 27864575 27864862 -254328802 + AluSq SINE Alu 1 293 -20 656 250 50 144 chr1 27864862 27865121 -254328543 - L1ME4a LINE L1 -212 5909 5706 1037 142 103 71 chr1 27865128 27865208 -254328456 + L1MD2 LINE L1 6057 6133 -226 264 30 0 0 chr1 27865208 27865241 -254328423 + (CA)n Simple_repeat Simple_repeat 2 34 0 1037 142 103 71 chr1 27865241 27865380 -254328284 + L1MD2 LINE L1 6133 6289 -70 2350 108 0 10 chr1 27865380 27865558 -254328106 - AluSp SINE Alu -2 311 136 2541 64 0 3 chr1 27865558 27865856 -254327808 - AluY SINE Alu -14 297 1 2350 108 0 10 chr1 27865856 27865991 -254327673 - AluSp SINE Alu -177 136 1 1037 142 103 71 chr1 27865991 27866052 -254327612 + L1MD2 LINE L1 6289 6347 -12 1829 171 0 36 chr1 27866053 27866357 -254327307 + AluJo SINE Alu 1 293 -19 2366 100 0 0 chr1 27866359 27866658 -254327006 + AluSx SINE Alu 1 299 -13 2191 106 3 13 chr1 27867371 27867673 -254325991 - AluSx SINE Alu -13 299 1 200 280 120 0 chr1 27867814 27867889 -254325775 - MIR SINE MIR -2 260 177 1925 152 17 0 chr1 27867959 27868261 -254325403 + AluJb SINE Alu 1 307 -5 429 243 160 42 chr1 27868737 27868881 -254324783 - L2 LINE L2 0 3313 3153 883 147 0 0 chr1 27869410 27869539 -254324125 - FLAM_C SINE Alu -14 129 1 350 241 13 13 chr1 27870390 27870469 -254323195 + MIR SINE MIR 36 114 -148 197 273 18 18 chr1 27870501 27870556 -254323108 + MIR SINE MIR 196 250 -12 2273 80 40 0 chr1 27870825 27871124 -254322540 - AluSq SINE Alu -2 311 1 1675 170 33 26 chr1 27871749 27872055 -254321609 - AluJo SINE Alu 0 312 5 455 110 0 14 chr1 27872132 27872205 -254321459 - Alu SINE Alu -238 73 2 1995 117 37 0 chr1 27872359 27872691 -254320973 - AluSx SINE Alu 0 345 4 411 200 0 0 chr1 27872732 27872797 -254320867 + L2 LINE L2 3249 3313 0 2417 91 0 3 chr1 27872825 27873121 -254320543 + AluSp SINE Alu 1 295 -18 478 324 85 27 chr1 27873396 27873689 -254319975 + L2 LINE L2 3000 3309 -4 258 204 0 0 chr1 27873714 27873763 -254319901 - L2 LINE L2 -2 3270 3222 329 259 224 0 chr1 27873931 27874047 -254319617 - L2 LINE L2 -6 3307 3166 349 218 103 73 chr1 27874355 27874499 -254319165 - MIR SINE MIR -65 197 46 2428 76 0 32 chr1 27874499 27874813 -254318851 + AluSg SINE Alu 1 304 -6 349 218 103 73 chr1 27874813 27874833 -254318831 - MIR SINE MIR -216 46 28 474 241 14 28 chr1 27874896 27875037 -254318627 - MLT1J LTR MaLR 0 511 373 513 328 113 9 chr1 27875205 27875434 -254318230 - MIR SINE MIR -6 256 4 368 224 24 0 chr1 27875853 27875938 -254317726 - MLT1K LTR MaLR -2 586 500 1136 172 0 0 chr1 27876078 27876247 -254317417 - AluJb SINE Alu -10 302 134 1943 154 23 3 chr1 27876247 27876546 -254317118 - AluJo SINE Alu -7 305 1 732 230 116 81 chr1 27877340 27877610 -254316054 - MLT1K LTR MaLR -1 475 181 2332 95 7 0 chr1 27877610 27877914 -254315750 - AluSq SINE Alu -6 307 2 732 230 116 81 chr1 27877914 27878100 -254315564 - MLT1K LTR MaLR -295 181 3 515 302 66 11 chr1 27878361 27878543 -254315121 - L1ME4a LINE L1 -113 6008 5817 501 127 14 0 chr1 27878551 27878622 -254315042 - FLAM_A SINE Alu -19 123 52 1654 164 107 0 chr1 27878638 27878918 -254314746 - AluJb SINE Alu -2 310 1 329 261 54 54 chr1 27878932 27879043 -254314621 + L1MC4 LINE L1 6559 6669 -1373 305 267 22 44 chr1 27878987 27879051 -254314613 - L1MCa LINE L1 -4362 2064 2001 * 2196 90 50 0 chr1 27879051 27879328 -254314336 + AluSc SINE Alu 1 291 -18 305 267 22 44 chr1 27879328 27879353 -254314311 - L1MCa LINE L1 -4425 2001 1977 396 320 80 7 chr1 27879376 27879526 -254314138 - MIR SINE MIR -79 183 23 1893 136 7 37 chr1 27879745 27879868 -254313796 + AluSx SINE Alu 14 139 -173 2387 90 0 7 chr1 27879868 27880168 -254313496 + AluSq SINE Alu 1 298 -15 1893 136 7 37 chr1 27880168 27880339 -254313325 + AluSx SINE Alu 139 299 -13 1068 242 59 28 chr1 27880409 27880764 -254312900 + L1MC/D LINE L1 5418 5783 -2025 927 289 110 12 chr1 27880769 27881177 -254312487 - MLT1J2 LTR MaLR 0 450 3 2068 138 7 13 chr1 27881985 27882290 -254311374 - AluJo SINE Alu -9 303 1 2507 11 81 0 chr1 27882360 27882644 -254311020 + AluY SINE Alu 1 307 -4 1337 278 147 29 chr1 27883020 27883214 -254310450 - L2 LINE L2 -1 3312 3142 1765 171 23 26 chr1 27883214 27883519 -254310145 + AluJo SINE Alu 1 304 -8 1337 278 147 29 chr1 27883519 27884059 -254309605 - L2 LINE L2 -171 3142 2453 1920 145 26 16 chr1 27884059 27884363 -254309301 - AluJo SINE Alu -5 307 1 1337 278 147 29 chr1 27884363 27884466 -254309198 - L2 LINE L2 -860 2453 2364 364 221 336 0 chr1 27884594 27884707 -254308957 + L2 LINE L2 3122 3272 0 475 308 173 28 chr1 27886677 27886891 -254306773 + MIR SINE MIR 2 246 -16 189 286 0 0 chr1 27886858 27886900 -254306764 + L2 LINE L2 3259 3300 -13 * 1847 172 0 7 chr1 27887264 27887580 -254306084 + AluJo SINE Alu 3 312 0 310 210 86 0 chr1 27887601 27887682 -254305982 + MIR SINE MIR 58 145 -117 494 320 71 74 chr1 27888507 27888770 -254304894 - L3 LINE CR1 -213 1364 1102 1846 162 7 13 chr1 27888770 27889078 -254304586 + AluJb SINE Alu 1 306 -6 494 320 71 74 chr1 27889078 27889159 -254304505 - L3 LINE CR1 -475 1102 1022 208 0 0 0 chr1 27889159 27889182 -254304482 + (TTTTG)n Simple_repeat Simple_repeat 3 155 0 2145 96 0 38 chr1 27889182 27889475 -254304189 - AluSx SINE Alu -30 282 1 494 320 71 74 chr1 27889475 27889590 -254304074 - L3 LINE CR1 -553 1024 904 709 318 50 12 chr1 27889985 27890227 -254303437 - MIR SINE MIR -10 252 2 366 316 98 50 chr1 27890394 27890752 -254302912 - L2 LINE L2 -344 2970 2596 1051 185 0 0 chr1 27890765 27890927 -254302737 + AluJb SINE Alu 136 297 -15 2858 230 242 5 chr1 27891167 27891452 -254302212 + L2 LINE L2 1293 1509 -1805 2074 131 3 3 chr1 27891452 27891776 -254301888 - AluSx SINE Alu 0 312 1 2858 230 242 5 chr1 27891776 27892597 -254301067 + L2 LINE L2 1509 2662 -652 2283 69 0 4 chr1 27892609 27892885 -254300779 - AluY SINE Alu -11 300 26 5057 133 22 77 chr1 27892885 27893816 -254299848 - L1PB4 LINE L1 -8 6148 5336 2376 110 0 7 chr1 27893816 27894125 -254299539 - AluSx SINE Alu -5 307 1 5057 133 22 77 chr1 27894125 27895100 -254298564 - L1PB4 LINE L1 -820 5336 4309 825 165 0 0 chr1 27895106 27895233 -254298431 - FLAM_C SINE Alu -4 129 3 241 145 0 113 chr1 27895244 27895306 -254298358 - L1PB4 LINE L1 -1819 4327 4273 759 96 29 0 chr1 27895358 27895462 -254298202 - U6 snRNA snRNA 0 107 1 1426 239 63 45 chr1 27895467 27895858 -254297806 + L2 LINE L2 2665 3056 -257 2329 99 7 0 chr1 27895858 27896160 -254297504 + AluSc SINE Alu 1 304 -5 1426 239 63 45 chr1 27896160 27896421 -254297243 + L2 LINE L2 3056 3311 -2 224 341 61 0 chr1 27896433 27896515 -254297149 - L2 LINE L2 -18 3295 3209 1729 169 20 10 chr1 27896822 27897118 -254296546 - AluJo SINE Alu -13 299 1 713 284 5 31 chr1 27897134 27897356 -254296308 + MIR SINE MIR 47 262 0 249 196 0 0 chr1 27898507 27898553 -254295111 + Alu SINE Alu 113 158 -8 2409 98 3 3 chr1 27898553 27898860 -254294804 + AluSx SINE Alu 1 307 -5 24 0 0 0 chr1 27898860 27898884 -254294780 + AT_rich Low_complexity Low_complexity 1 24 0 432 323 99 12 chr1 27899508 27899669 -254293995 + MIR SINE MIR 18 192 -70 604 274 57 9 chr1 27899677 27899889 -254293775 - L1M4 LINE L1 -3250 2896 2675 2208 133 0 7 chr1 27899933 27900235 -254293429 - AluSx SINE Alu -12 300 1 1201 254 48 33 chr1 27900721 27901052 -254292612 - MLT1I LTR MaLR 0 409 74 1138 53 0 0 chr1 27901594 27901726 -254291938 - AluY SINE Alu -179 132 1 356 285 96 20 chr1 27902259 27902438 -254291226 - MIR SINE MIR -29 233 45 2390 94 0 0 chr1 27902443 27902741 -254290923 - AluSq SINE Alu -15 298 1 1058 143 30 0 chr1 27902746 27902914 -254290750 - AluJb SINE Alu -7 305 133 1796 160 7 14 chr1 27903185 27903478 -254290186 - AluJb SINE Alu -7 305 15 759 290 107 0 chr1 27903483 27903707 -254289957 + MIR SINE MIR 13 260 -2 333 155 0 0 chr1 27903812 27903870 -254289794 + CT-rich Low_complexity Low_complexity 3 60 0 873 154 23 0 chr1 27903888 27904063 -254289601 + CT-rich Low_complexity Low_complexity 2 180 0 1702 151 21 32 chr1 27904069 27904348 -254289316 - AluJo SINE Alu -36 276 1 289 238 24 189 chr1 27905071 27905319 -254288345 + MIR3 SINE MIR 1 207 -1 2407 112 0 0 chr1 27905379 27905691 -254287973 - AluSx SINE Alu 0 312 1 2176 84 4 0 chr1 27905824 27906087 -254287577 - AluSx SINE Alu -48 264 1 404 280 78 47 chr1 27906785 27906978 -254286686 + MIR SINE MIR 34 232 -30 662 277 104 0 chr1 27907037 27907239 -254286425 - MIR SINE MIR -15 247 25 2238 110 7 0 chr1 27907252 27907543 -254286121 - AluSx SINE Alu -19 293 1 306 255 16 115 chr1 27907883 27907940 -254285724 + MER5B DNA MER1_type 2 63 -115 2071 140 0 14 chr1 27907940 27908255 -254285409 + AluSx SINE Alu 1 312 0 306 255 16 115 chr1 27908255 27908389 -254285275 + MER5B DNA MER1_type 63 174 -4 2387 99 0 0 chr1 27908417 27908719 -254284945 - AluSg SINE Alu -8 302 1 350 259 301 7 chr1 27908764 27908907 -254284757 - MIR3 SINE MIR -1 207 23 1131 167 22 0 chr1 27909020 27909200 -254284464 - AluJo SINE Alu -12 300 117 621 237 15 0 chr1 27909536 27909671 -254283993 + MER5B DNA MER1_type 42 178 0 1910 203 81 40 chr1 27909685 27909999 -254283665 - MLT1F LTR MaLR -54 488 147 2230 116 0 28 chr1 27909999 27910317 -254283347 + AluSg SINE Alu 2 310 0 1910 203 81 40 chr1 27910317 27910471 -254283193 - MLT1F LTR MaLR -395 147 1 666 256 17 6 chr1 27910685 27910857 -254282807 + MER5B DNA MER1_type 1 174 -4 2091 109 11 0 chr1 27911088 27911364 -254282300 + AluSq SINE Alu 11 289 -24 2255 68 39 0 chr1 27911509 27911788 -254281876 + AluSg SINE Alu 2 291 -19 215 192 19 19 chr1 27912861 27912913 -254280751 - MIR SINE MIR -92 170 119 2329 104 0 3 chr1 27913290 27913589 -254280075 - AluSx SINE Alu -14 298 1 825 270 25 34 chr1 27913654 27913891 -254279773 + MIR SINE MIR 19 253 -9 253 425 42 0 chr1 27913885 27914005 -254279659 - L2 LINE L2 -21 3251 3127 * 1632 80 14 24 chr1 27914488 27914700 -254278964 - AluSg/x SINE Alu -19 293 84 278 362 9 9 chr1 27915026 27915131 -254278533 - MIR SINE MIR -78 130 26 2112 128 47 33 chr1 27915300 27915659 -254278005 - THE1B LTR MaLR 0 364 1 182 179 71 54 chr1 27915706 27915762 -254277902 + MIR SINE MIR 62 118 -90 259 331 143 32 chr1 27915957 27916111 -254277553 - L2 LINE L2 0 3272 3102 1461 188 6 80 chr1 27916113 27916438 -254277226 - AluJo SINE Alu 0 302 2 715 190 8 0 chr1 27916451 27916572 -254277092 - FLAM_C SINE Alu -10 123 2 1975 110 89 0 chr1 27916846 27917128 -254276536 - AluSx SINE Alu -5 307 1 497 269 40 20 chr1 27917704 27917853 -254275811 - MIR3 SINE MIR -26 182 31 188 358 147 0 chr1 27917913 27918022 -254275642 - L2 LINE L2 -33 3239 3115 804 207 0 0 chr1 27918163 27918303 -254275361 - FAM SINE Alu -42 143 4 255 316 18 26 chr1 27918952 27919066 -254274598 - MIR3 SINE MIR -87 121 9 1881 150 3 11 chr1 27920055 27920376 -254273288 - AluJb SINE Alu 0 319 1 313 298 67 14 chr1 27920448 27920656 -254273008 - L1MC4a LINE L1 -1875 5933 5715 1384 122 5 10 chr1 27920681 27920877 -254272787 - AluJ SINE Alu -12 300 106 242 118 0 0 chr1 27920959 27920993 -254272671 + Alu SINE Alu 85 118 -184 548 274 119 40 chr1 27921085 27921118 -254272546 - L1ME4a LINE L1 -38 6083 6054 2518 81 3 0 chr1 27921118 27921426 -254272238 + AluSc SINE Alu 1 309 0 548 274 119 40 chr1 27921426 27921544 -254272120 - L1ME4a LINE L1 -67 6054 5947 695 169 8 8 chr1 27921544 27921662 -254272002 - AluJ SINE Alu -183 119 2 548 274 119 40 chr1 27921662 27921888 -254271776 - L1ME4a LINE L1 -174 5947 5675 233 217 0 50 chr1 27921899 27921959 -254271705 + MER51C LTR ERV1 92 148 -492 234 128 0 0 chr1 27922077 27922116 -254271548 + (T)n Simple_repeat Simple_repeat 1 39 0 673 269 85 36 chr1 27922219 27922609 -254271055 - L1MC4a LINE L1 -1851 5957 5549 248 244 0 58 chr1 27922616 27922702 -254270962 - L1ME4a LINE L1 -502 5619 5539 333 0 0 0 chr1 27922752 27922789 -254270875 + (CA)n Simple_repeat Simple_repeat 2 38 0 220 263 150 0 chr1 27922996 27923076 -254270588 + MIR SINE MIR 164 255 -7 208 313 152 54 chr1 27924093 27924205 -254269459 + MIR3 SINE MIR 41 163 -45 401 318 76 14 chr1 27924280 27924569 -254269095 + L1MC4a LINE L1 5620 5926 -1882 207 86 0 29 chr1 27924654 27924689 -254268975 + (CAGTT)n Simple_repeat Simple_repeat 4 37 0 2138 102 14 0 chr1 27924809 27925122 -254268542 + AluSg SINE Alu 1 310 0 314 244 43 17 chr1 27925172 27925287 -254268377 + L1ME4a LINE L1 5969 6086 -35 1160 157 127 55 chr1 27925421 27925663 -254268001 - MER66A LTR ERV1 -3 475 209 2237 113 0 0 chr1 27925663 27925956 -254267708 - AluSg SINE Alu -17 293 1 1160 157 127 55 chr1 27925956 27926044 -254267620 - MER66A LTR ERV1 -269 209 129 537 299 150 20 chr1 27926191 27926532 -254267132 + L2 LINE L2 2887 3271 -1 371 243 0 0 chr1 27926605 27926675 -254266989 - MIR SINE MIR -185 77 8 257 211 0 0 chr1 27926700 27926752 -254266912 - L2 LINE L2 -5 3308 3257 715 164 57 14 chr1 27926759 27926899 -254266765 + L1PA16 LINE L1 6007 6152 -14 2001 129 37 0 chr1 27926903 27927197 -254266467 - AluSx SINE Alu -7 305 1 2428 71 0 10 chr1 27927204 27927512 -254266152 - AluY SINE Alu -6 305 1 2087 147 3 0 chr1 27927840 27928139 -254265525 + AluSx SINE Alu 1 300 -12 1322 140 23 26 chr1 27928657 27928922 -254264742 + L1MD3 LINE L1 7711 7974 -21 30 27 0 0 chr1 27928928 27928965 -254264699 + AT_rich Low_complexity Low_complexity 1 37 0 2456 95 0 0 chr1 27928967 27929271 -254264393 + AluSg SINE Alu 1 304 -6 212 342 105 33 chr1 27929427 27929579 -254264085 - L2 LINE L2 -70 3202 3040 1684 198 48 17 chr1 27929623 27929977 -254263687 + MLT1A1 LTR MaLR 1 365 0 2214 118 0 3 chr1 27930166 27930462 -254263202 + AluSq SINE Alu 1 295 -18 283 223 108 22 chr1 27930473 27930612 -254263052 - L1ME4a LINE L1 -3 6118 5968 473 296 116 28 chr1 27930703 27930919 -254262745 - L3 LINE CR1 -11 1566 1332 2522 64 0 0 chr1 27930930 27931228 -254262436 - AluY SINE Alu -13 298 1 649 282 44 6 chr1 27931541 27931722 -254261942 - MIR SINE MIR -12 250 63 305 283 26 35 chr1 27931743 27931856 -254261808 + MIR3 SINE MIR 51 162 -46 261 260 180 30 chr1 27931857 27931957 -254261707 + MIR SINE MIR 1 115 -147 1300 211 59 12 chr1 27931957 27932539 -254261125 - MER115 DNA AcHobo 0 693 28 2402 84 3 34 chr1 27932560 27932883 -254260781 + AluSp SINE Alu 1 313 0 710 175 0 9 chr1 27932978 27933092 -254260572 - MER81 DNA DNA 0 114 2 483 262 87 0 chr1 27933094 27933220 -254260444 + MIR SINE MIR 124 260 -2 1901 157 7 7 chr1 27933260 27933560 -254260104 + AluJb SINE Alu 13 312 0 252 155 58 78 chr1 27933560 27933663 -254260001 - MER104 DNA Tc2 -76 104 4 231 260 137 0 chr1 27933672 27933745 -254259919 - L2 LINE L2 -38 3275 3193 712 301 38 0 chr1 27934064 27934303 -254259361 + L1MC4a LINE L1 5549 5796 -2012 2120 131 0 3 chr1 27934390 27934673 -254258991 + AluSx SINE Alu 1 282 -30 1272 153 119 75 chr1 27934717 27934985 -254258679 - AluJo SINE Alu -30 282 3 241 280 51 25 chr1 27934993 27935111 -254258553 + L1MC4a LINE L1 5862 5982 -1826 760 89 0 0 chr1 27935251 27935352 -254258312 + MER72 LTR ERV1 601 701 -21 266 103 0 0 chr1 27935352 27935391 -254258273 + HERVH LTR ERV1 105 143 -7570 * 557 161 29 73 chr1 27935359 27935496 -254258168 + HERVH LTR ERV1 2009 2139 -5574 984 184 83 109 chr1 27935503 27935926 -254257738 + LTR7 LTR ERV1 1 412 -38 216 0 0 0 chr1 27935926 27935950 -254257714 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 2362 99 0 3 chr1 27936065 27936369 -254257295 + AluSq SINE Alu 1 303 -10 263 267 47 12 chr1 27936397 27936483 -254257181 - MIR SINE MIR 0 262 174 2409 86 0 0 chr1 27936545 27936849 -254256815 - AluY SINE Alu -7 304 1 292 231 100 77 chr1 27936878 27937008 -254256656 - L2 LINE L2 -14 3258 3126 902 129 0 0 chr1 27937720 27937836 -254255828 + FLAM_C SINE Alu 1 116 -27 450 0 0 0 chr1 27937852 27937902 -254255762 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1574 174 13 58 chr1 27942156 27942466 -254251198 - AluJo SINE Alu -16 296 1 285 337 4 54 chr1 27943070 27943210 -254250454 - MIR SINE MIR -80 128 5 458 208 54 8 chr1 27943388 27943518 -254250146 - L1ME4a LINE L1 -14 6107 5972 210 190 164 69 chr1 27943536 27943652 -254250012 - MIR SINE MIR -55 207 81 2223 111 14 0 chr1 27944480 27944769 -254248895 - AluSx SINE Alu -19 293 1 198 0 0 0 chr1 27945357 27945379 -254248285 + (T)n Simple_repeat Simple_repeat 1 22 0 203 218 97 105 chr1 27946733 27946857 -254246807 + MIR SINE MIR 140 262 0 235 315 65 0 chr1 27947489 27947597 -254246067 + MIR3 SINE MIR 87 201 -7 2456 88 7 0 chr1 27949158 27949463 -254244201 - AluSg SINE Alu -2 308 2 318 200 62 12 chr1 27949476 27949556 -254244108 + L3 LINE CR1 1491 1574 -3 434 293 85 23 chr1 27950210 27950382 -254243282 - MIR SINE MIR -57 205 25 233 338 0 0 chr1 27950423 27950494 -254243170 + L2 LINE L2 3180 3250 -63 669 286 122 8 chr1 27950709 27950971 -254242693 + MER102b DNA MER1_type 8 299 -42 2335 66 0 14 chr1 27951111 27951397 -254242267 + AluY SINE Alu 21 302 -9 195 273 61 0 chr1 27951486 27951552 -254242112 - L2 LINE L2 -7 3265 3196 * 199 290 65 32 chr1 27951525 27951618 -254242046 + MER5A DNA MER1_type 28 123 -66 700 152 0 58 chr1 27951626 27951764 -254241900 + FLAM_C SINE Alu 2 131 -2 1879 165 0 7 chr1 27951808 27952099 -254241565 - AluJb SINE Alu -23 289 1 272 316 96 0 chr1 27952247 27952383 -254241281 + MER91A DNA MER1_type 15 163 -33 2312 110 0 0 chr1 27952656 27952956 -254240708 + AluSq SINE Alu 1 300 -13 561 307 83 0 chr1 27953170 27953362 -254240302 + MER5C DNA MER1_type 1 208 -116 525 187 9 0 chr1 27953368 27953475 -254240189 - L1MB4 LINE L1 -6 6174 6067 225 307 61 26 chr1 27953954 27954068 -254239596 - MIR SINE MIR -58 150 33 189 0 0 0 chr1 27954094 27954115 -254239549 + (A)n Simple_repeat Simple_repeat 1 21 0 2164 91 7 4 chr1 27954115 27954389 -254239275 - AluSx SINE Alu -37 275 1 33 0 0 0 chr1 27954389 27954422 -254239242 + AT_rich Low_complexity Low_complexity 1 33 0 219 234 0 0 chr1 27954866 27954913 -254238751 + MIR3 SINE MIR 131 177 -31 591 234 45 60 chr1 27955077 27955149 -254238515 - MIR SINE MIR -4 258 186 2358 101 7 0 chr1 27955149 27955446 -254238218 - AluSq SINE Alu -14 299 1 591 234 45 60 chr1 27955446 27955574 -254238090 - MIR SINE MIR -76 186 61 3310 90 9 0 chr1 27955744 27956198 -254237466 - LTR22A LTR ERVK 0 458 1 432 280 177 0 chr1 27956359 27956534 -254237130 - L2 LINE L2 -4 3309 3104 503 274 206 14 chr1 27956558 27957073 -254236591 - L2 LINE L2 -343 2971 2358 480 262 60 36 chr1 27957625 27957793 -254235871 + MLT1J LTR MaLR 223 394 -117 508 267 35 0 chr1 27958000 27958116 -254235548 - L2 LINE L2 -1 3312 3193 298 246 320 17 chr1 27958270 27958445 -254235219 - MIR SINE MIR -3 259 32 207 0 0 0 chr1 27958488 27958511 -254235153 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2443 92 0 0 chr1 27958512 27958816 -254234848 + AluSc SINE Alu 1 304 -5 290 236 94 138 chr1 27959351 27959611 -254234053 - L2 LINE L2 -49 3223 2978 2145 118 10 10 chr1 27959611 27959917 -254233747 + AluSc SINE Alu 1 306 -3 290 236 94 138 chr1 27959917 27959974 -254233690 - L2 LINE L2 -294 2978 2920 405 302 72 0 chr1 27960043 27960182 -254233482 - MIR3 SINE MIR -7 201 53 704 185 8 0 chr1 27960411 27960541 -254233123 + MER5B DNA MER1_type 48 178 0 264 185 248 57 chr1 27960857 27961000 -254232664 + MIR SINE MIR 19 183 -58 189 318 15 0 chr1 27961712 27961778 -254231886 + MIR SINE MIR 69 135 -73 2569 73 0 0 chr1 27961779 27962082 -254231582 - AluY SINE Alu -8 303 1 22 0 0 0 chr1 27962336 27962358 -254231306 + AT_rich Low_complexity Low_complexity 1 22 0 1336 183 17 4 chr1 27962389 27962656 -254231008 - AluJo SINE Alu 0 309 40 406 182 30 106 chr1 27962662 27962732 -254230932 - L1MB7 LINE L1 0 6184 6127 2304 81 0 27 chr1 27962732 27963029 -254230635 + AluY SINE Alu 2 290 -21 406 182 30 106 chr1 27963029 27963090 -254230574 - L1MB7 LINE L1 -57 6127 6063 2244 110 0 26 chr1 27963090 27963400 -254230264 - AluSq SINE Alu -11 302 1 858 169 81 12 chr1 27963403 27963563 -254230101 - FRAM SINE Alu -10 166 1 189 0 0 0 chr1 27963673 27963694 -254229970 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2307 76 4 0 chr1 27963700 27963975 -254229689 - AluSp SINE Alu -37 276 1 242 250 43 54 chr1 27964048 27964140 -254229524 - L2 LINE L2 -349 2964 2874 1778 130 115 4 chr1 27964331 27964600 -254229064 + AluSx SINE Alu 1 299 -13 230 230 220 10 chr1 27964648 27964748 -254228916 - LTR16C LTR ERVL -1 490 370 271 316 51 25 chr1 27965498 27965694 -254227970 + L2 LINE L2 2817 3017 -255 640 319 38 9 chr1 27965925 27966138 -254227526 - MIR SINE MIR 0 262 44 249 258 68 0 chr1 27966711 27966794 -254226870 + MIR SINE MIR 51 140 -68 348 217 0 0 chr1 27966990 27967059 -254226605 + MIR SINE MIR 79 147 -115 987 162 22 11 chr1 27967059 27967244 -254226420 - MER39 LTR ERV1 0 707 521 381 91 0 0 chr1 27967240 27967295 -254226369 + MER39B LTR ERV1 411 465 -188 * 809 104 0 0 chr1 27967312 27967418 -254226246 + AluSg/x SINE Alu 189 294 -15 265 30 0 0 chr1 27967499 27967532 -254226132 - AluSp/q SINE Alu -78 225 193 1477 118 180 78 chr1 27967549 27967701 -254225963 - MER39B LTR ERV1 -187 466 331 2331 111 10 0 chr1 27967701 27968008 -254225656 - AluSg SINE Alu 0 310 1 1477 118 180 78 chr1 27968008 27968051 -254225613 - MER39B LTR ERV1 -322 331 294 180 0 0 0 chr1 27968051 27968071 -254225593 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 1477 118 180 78 chr1 27968071 27968110 -254225554 - MER39B LTR ERV1 -359 294 260 2427 91 0 0 chr1 27968110 27968408 -254225256 - AluSc SINE Alu -11 298 1 1477 118 180 78 chr1 27968408 27968554 -254225110 - MER39B LTR ERV1 -393 260 45 2280 90 0 0 chr1 27968554 27968833 -254224831 - AluSx SINE Alu -12 300 22 192 217 0 0 chr1 27968844 27968890 -254224774 + CT-rich Low_complexity Low_complexity 1 46 0 637 81 30 10 chr1 27968900 27968999 -254224665 - HY1 scRNA scRNA -9 103 3 307 79 0 143 chr1 27969000 27969063 -254224601 - MER39B LTR ERV1 -599 54 1 506 228 24 13 chr1 27969115 27969264 -254224400 + MIR SINE MIR 98 248 -14 223 120 20 20 chr1 27969569 27969619 -254224045 + CT-rich Low_complexity Low_complexity 1 50 0 725 263 0 0 chr1 27969624 27969799 -254223865 - FRAM SINE Alu -1 175 1 308 320 16 10 chr1 27969869 27970023 -254223641 - MIR SINE MIR -55 207 52 824 195 7 7 chr1 27972160 27972314 -254221350 + FRAM SINE Alu 8 161 -15 2480 94 3 0 chr1 27972316 27972623 -254221041 + AluSp SINE Alu 3 310 -3 1701 179 28 0 chr1 27972626 27972911 -254220753 + AluJb SINE Alu 1 293 -19 1912 139 27 10 chr1 27973686 27973987 -254219677 + AluJb SINE Alu 1 306 -6 210 243 146 19 chr1 27974017 27974120 -254219544 + L2 LINE L2 3150 3265 -7 406 238 32 24 chr1 27974131 27974257 -254219407 - MIR3 SINE MIR -31 177 51 322 317 54 30 chr1 27974272 27974439 -254219225 - MIR SINE MIR -35 227 57 203 250 33 125 chr1 27974619 27974739 -254218925 + L2 LINE L2 3198 3306 -7 188 108 0 27 chr1 27974929 27974966 -254218698 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 610 265 123 18 chr1 27975514 27975733 -254217931 - MIR SINE MIR 0 262 21 219 264 35 58 chr1 27975839 27975926 -254217738 + MIR SINE MIR 49 133 -75 2323 113 7 0 chr1 27976897 27977207 -254216457 - AluSx SINE Alu 0 312 1 296 281 141 0 chr1 27977215 27977336 -254216328 + MIR SINE MIR 104 241 -21 2464 71 0 3 chr1 27977354 27977650 -254216014 - AluSc SINE Alu -14 295 1 480 194 8 97 chr1 27977689 27977766 -254215898 + MER103 DNA DNA 4 66 -100 2176 135 0 3 chr1 27977766 27978070 -254215594 - AluJb SINE Alu -9 303 1 480 194 8 97 chr1 27978070 27978126 -254215538 + MER103 DNA DNA 66 125 -41 252 337 21 0 chr1 27978251 27978346 -254215318 + MIR3 SINE MIR 88 184 -24 1718 163 10 40 chr1 27979166 27979466 -254214198 + AluJo SINE Alu 5 295 -17 2269 86 7 0 chr1 27979466 27979783 -254213881 + AluSx SINE Alu 1 319 0 573 217 17 0 chr1 27979808 27979923 -254213741 + MIR SINE MIR 66 182 -80 367 310 70 0 chr1 27979956 27980098 -254213566 + L2 LINE L2 3162 3313 0 2416 89 0 10 chr1 27980482 27980660 -254213004 - AluSp SINE Alu -2 311 136 2509 74 7 0 chr1 27980660 27980969 -254212695 - AluY SINE Alu 0 311 1 2416 89 0 10 chr1 27980969 27981103 -254212561 - AluSp SINE Alu -177 136 2 367 321 133 41 chr1 27981109 27981320 -254212344 - L2 LINE L2 -1 3271 3081 2330 70 36 7 chr1 27981320 27981621 -254212043 - AluY SINE Alu -1 310 1 1587 180 30 30 chr1 27981625 27981920 -254211744 - AluJo SINE Alu -17 295 1 367 321 133 41 chr1 27981920 27982177 -254211487 - L2 LINE L2 -193 3079 2751 424 200 158 0 chr1 27982374 27982469 -254211195 - L2 LINE L2 -1 3312 3203 2484 71 13 3 chr1 27984453 27984763 -254208901 - AluSp SINE Alu 0 313 1 250 225 67 11 chr1 27984855 27984944 -254208720 - L2 LINE L2 -263 3009 2916 369 0 0 0 chr1 27985556 27985597 -254208067 + (CA)n Simple_repeat Simple_repeat 2 42 0 1915 152 0 11 chr1 27985632 27985915 -254207749 + AluSx SINE Alu 1 280 -32 2341 60 18 0 chr1 27986040 27986324 -254207340 + AluSg SINE Alu 1 289 -21 21 36 0 0 chr1 27986986 27987014 -254206650 + GC_rich Low_complexity Low_complexity 1 28 0 219 276 181 19 chr1 27987814 27987919 -254205745 - MIR SINE MIR -130 132 11 325 263 150 23 chr1 27987938 27988071 -254205593 - MIR SINE MIR -1 261 112 190 291 12 105 chr1 27988067 27988153 -254205511 - L2 LINE L2 -80 3192 3115 * 416 287 28 28 chr1 27988150 27988293 -254205371 - MIR SINE MIR 0 262 120 2349 74 0 0 chr1 27988298 27988609 -254205055 - AluY SINE Alu 0 312 2 2346 96 3 0 chr1 27988612 27988914 -254204750 - AluSq SINE Alu -10 303 1 2383 72 16 10 chr1 27988946 27989251 -254204413 + AluSx SINE Alu 1 307 -5 1710 152 3 34 chr1 27989371 27989667 -254203997 - AluJb SINE Alu -25 287 1 201 39 0 0 chr1 27989787 27989813 -254203851 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1950 124 33 0 chr1 27989817 27990091 -254203573 - AluSp SINE Alu -30 283 1 2410 106 3 0 chr1 27990099 27990410 -254203254 - AluSx SINE Alu 0 312 1 25 65 0 0 chr1 27990989 27991035 -254202629 + AT_rich Low_complexity Low_complexity 1 46 0 621 163 78 47 chr1 27991042 27991171 -254202493 + AluJo SINE Alu 12 144 -168 1381 213 197 34 chr1 27991177 27991322 -254202342 + MLT1F1 LTR MaLR 1 121 -446 1683 116 0 0 chr1 27991322 27991546 -254202118 + AluSg/x SINE Alu 87 310 -2 1381 213 197 34 chr1 27991546 27991837 -254201827 + MLT1F1 LTR MaLR 121 508 -59 535 288 109 47 chr1 27991837 27992157 -254201507 + MLT1F1-int LTR MaLR 1032 1371 0 1188 147 93 58 chr1 27992157 27992250 -254201414 + MLT1F1 LTR MaLR 1 89 -478 2031 123 22 0 chr1 27992250 27992559 -254201105 - AluSx SINE Alu 0 315 1 1188 147 93 58 chr1 27992559 27992869 -254200795 + MLT1F1 LTR MaLR 89 503 -64 2096 136 10 0 chr1 27992869 27993177 -254200487 - AluSx SINE Alu -1 311 1 1188 147 93 58 chr1 27993177 27993245 -254200419 + MLT1F1 LTR MaLR 503 567 0 5890 186 81 119 chr1 27993273 27993753 -254199911 + L1MB7 LINE L1 2533 3030 -3116 2176 89 65 3 chr1 27993753 27994044 -254199620 + AluSq SINE Alu 1 309 -4 5890 186 81 119 chr1 27994044 27994243 -254199421 + L1MB7 LINE L1 3030 3235 -2911 1849 153 4 7 chr1 27994243 27994524 -254199140 + AluJb SINE Alu 5 284 -28 5890 186 81 119 chr1 27994524 27994562 -254199102 + L1MB7 LINE L1 3235 3273 -2873 1405 124 20 0 chr1 27994562 27994763 -254198901 + AluSg/x SINE Alu 103 307 -3 5890 186 81 119 chr1 27994763 27996252 -254197412 + L1MB7 LINE L1 3273 4850 -1296 221 0 35 0 chr1 27996252 27996281 -254197383 + (TTG)n Simple_repeat Simple_repeat 2 31 0 332 123 0 18 chr1 27996352 27996409 -254197255 - L1MB8 LINE L1 -7 6171 6116 2621 146 39 46 chr1 27996409 27996556 -254197108 + L1MB7 LINE L1 5639 5786 -398 2124 145 0 10 chr1 27996556 27996867 -254196797 + AluSx SINE Alu 1 308 -4 2621 146 39 46 chr1 27996867 27997249 -254196415 + L1MB7 LINE L1 5786 6175 -9 1982 232 53 33 chr1 27997409 27997976 -254195688 - MER77 LTR ERV1 -4 601 55 1352 132 5 18 chr1 27997983 27998202 -254195462 - AluSq SINE Alu -4 309 94 210 308 0 66 chr1 27998425 27998516 -254195148 - L2 LINE L2 -671 2643 2559 1859 147 43 7 chr1 27998519 27998819 -254194845 - AluSx SINE Alu -1 311 1 2188 127 3 13 chr1 27998928 27999236 -254194428 + AluSx SINE Alu 1 305 -7 1997 128 25 0 chr1 27999769 28000051 -254193613 - AluSq SINE Alu -24 289 1 2371 98 10 0 chr1 28000051 28000355 -254193309 - AluSx SINE Alu -4 308 1 331 348 55 39 chr1 28001188 28001369 -254192295 - L2 LINE L2 -558 2756 2573 2194 93 33 3 chr1 28002094 28002394 -254191270 + AluSq SINE Alu 1 309 -4 11728 120 34 40 chr1 28002395 28002882 -254190782 - Tigger1 DNA MER2_type -362 2056 1568 701 209 8 22 chr1 28002882 28003016 -254190648 - FLAM_A SINE Alu 0 133 2 11728 120 34 40 chr1 28003016 28003306 -254190358 - Tigger1 DNA MER2_type -850 1568 1278 1899 149 28 0 chr1 28003306 28003594 -254190070 - AluJo SINE Alu -16 296 1 11728 120 34 40 chr1 28003594 28004669 -254188995 - Tigger1 DNA MER2_type -1140 1278 213 2477 51 7 3 chr1 28004669 28004963 -254188701 + AluY SINE Alu 1 295 -16 11728 120 34 40 chr1 28004963 28005174 -254188490 - Tigger1 DNA MER2_type -2205 213 2 307 305 188 0 chr1 28005493 28005647 -254188017 + L2 LINE L2 3120 3302 -11 1141 236 14 32 chr1 28005705 28005989 -254187675 - MLT1G1 LTR MaLR -302 293 15 1416 286 111 34 chr1 28006003 28006527 -254187137 - L1MEc LINE L1 -5055 1341 859 2351 94 3 10 chr1 28006527 28006826 -254186838 + AluSq SINE Alu 1 297 -16 1416 286 111 34 chr1 28006826 28007201 -254186463 - L1MEc LINE L1 -5537 859 373 533 282 11 17 chr1 28007275 28007456 -254186208 - L1MEc LINE L1 -6150 246 67 531 235 90 60 chr1 28007887 28007965 -254185699 - MIR SINE MIR 0 262 188 2519 82 0 0 chr1 28007965 28008270 -254185394 - AluSg SINE Alu -5 305 1 531 235 90 60 chr1 28008270 28008391 -254185273 - MIR SINE MIR -74 188 57 1133 53 0 0 chr1 28008403 28008534 -254185130 - AluSg SINE Alu -179 131 1 2377 90 0 10 chr1 28011858 28012159 -254181505 - AluSc SINE Alu -11 298 1 1505 142 114 35 chr1 28012703 28012992 -254180672 - AluJo SINE Alu 0 312 1 1801 155 14 10 chr1 28013083 28013373 -254180291 + AluJo SINE Alu 7 297 -15 918 277 8 28 chr1 28014591 28014840 -254178824 - MIR SINE MIR -18 244 1 198 319 181 32 chr1 28016059 28016153 -254177511 - MER5A DNA MER1_type -65 124 17 1785 136 82 0 chr1 28017913 28018192 -254175472 - AluSx SINE Alu -10 302 1 1953 137 7 7 chr1 28018468 28018752 -254174912 + AluSx SINE Alu 1 284 -28 2035 147 0 23 chr1 28018755 28019055 -254174609 + AluSx SINE Alu 4 296 -16 2099 125 14 3 chr1 28019057 28019354 -254174310 + AluSx SINE Alu 1 300 -12 229 127 36 36 chr1 28020258 28020313 -254173351 - L2 LINE L2 -188 3084 3030 1711 185 24 3 chr1 28020359 28020646 -254173018 + AluSx SINE Alu 1 293 -19 23 54 0 0 chr1 28020893 28020930 -254172734 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr1 28021198 28021237 -254172427 + AT_rich Low_complexity Low_complexity 1 39 0 246 234 78 16 chr1 28021315 28021379 -254172285 - MIR SINE MIR -59 149 82 386 192 26 0 chr1 28021483 28021561 -254172103 + MIR SINE MIR 183 262 0 831 164 0 8 chr1 28022318 28022452 -254171212 + FLAM_A SINE Alu 1 133 0 2606 63 0 0 chr1 28023667 28023970 -254169694 + AluY SINE Alu 1 303 -8 418 303 40 51 chr1 28024249 28024424 -254169240 + MIR SINE MIR 58 230 -32 434 305 68 16 chr1 28024500 28024690 -254168974 - L2 LINE L2 0 3272 3073 232 304 29 51 chr1 28024969 28025107 -254168557 - MIR3 SINE MIR -62 146 12 239 245 108 20 chr1 28025248 28025350 -254168314 + L2 LINE L2 2673 2783 -531 387 0 0 0 chr1 28027062 28027105 -254166559 + (CA)n Simple_repeat Simple_repeat 1 43 0 772 250 60 0 chr1 28027359 28027527 -254166137 + MER45A DNA AcHobo 1 178 0 360 264 76 35 chr1 28027807 28027972 -254165692 + LTR16A1 LTR ERVL 236 412 -45 197 32 0 32 chr1 28027972 28028003 -254165661 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 360 264 76 35 chr1 28028003 28028034 -254165630 + LTR16A1 LTR ERVL 412 440 -17 652 220 126 0 chr1 28028782 28028941 -254164723 + MIR SINE MIR 27 205 -57 2251 103 0 0 chr1 28028978 28029279 -254164385 + AluSx SINE Alu 1 301 0 248 191 64 0 chr1 28031381 28031428 -254162236 + L2 LINE L2 3223 3272 0 277 269 113 36 chr1 28031713 28031901 -254161763 + MIR SINE MIR 14 211 -51 201 322 26 35 chr1 28032121 28032236 -254161428 - MIR SINE MIR -109 153 40 543 269 110 47 chr1 28032878 28033179 -254160485 + L2 LINE L2 2914 3233 -39 423 254 111 30 chr1 28033338 28033543 -254160121 - MIR SINE MIR -51 211 12 756 196 0 0 chr1 28033886 28034065 -254159599 + (TG)n Simple_repeat Simple_repeat 1 179 0 1738 165 9 22 chr1 28034116 28034432 -254159232 - AluJo SINE Alu 0 312 1 198 187 2 1 chr1 28035115 28035150 -254158514 - MIR SINE MIR -56 152 94 387 295 14 29 chr1 28035837 28036020 -254157644 - MIR3 SINE MIR -61 147 7 214 246 33 0 chr1 28036950 28037011 -254156653 + L2 LINE L2 2990 3052 -220 319 371 70 9 chr1 28037090 28037303 -254156361 - MIR SINE MIR -28 234 9 320 250 0 0 chr1 28038121 28038217 -254155447 + (CAGCC)n Simple_repeat Simple_repeat 1 96 0 215 232 295 0 chr1 28039146 28039258 -254154406 - L2 LINE L2 0 3313 3169 2258 68 0 56 chr1 28039354 28039677 -254153987 + AluY SINE Alu 1 305 -6 251 301 96 0 chr1 28039840 28039976 -254153688 + L2 LINE L2 2324 2472 -842 291 284 47 55 chr1 28040370 28040641 -254153023 - L2 LINE L2 -239 3033 2773 287 271 62 42 chr1 28040895 28041039 -254152625 + L2 LINE L2 2937 3083 -189 517 303 43 16 chr1 28041498 28041686 -254151978 - MIR SINE MIR -67 195 3 28 0 0 0 chr1 28041830 28041858 -254151806 + GC_rich Low_complexity Low_complexity 1 28 0 414 302 21 32 chr1 28042150 28042339 -254151325 + MER5A DNA MER1_type 2 188 -1 2074 92 41 17 chr1 28042500 28042793 -254150871 + AluSx SINE Alu 11 310 -2 380 244 12 0 chr1 28042820 28042906 -254150758 + MIR SINE MIR 70 156 -106 1984 146 3 0 chr1 28043837 28044139 -254149525 + AluSx SINE Alu 1 303 -9 2009 149 3 0 chr1 28044203 28044499 -254149165 + AluJb SINE Alu 1 297 -15 620 319 71 9 chr1 28044583 28044793 -254148871 + MIR SINE MIR 28 250 -12 1895 141 23 0 chr1 28044803 28045102 -254148562 - AluJb SINE Alu 0 312 7 245 259 74 32 chr1 28045116 28045255 -254148409 - MIR3 SINE MIR -76 132 15 219 213 0 53 chr1 28045912 28045987 -254147677 + C-rich Low_complexity Low_complexity 2 72 0 241 216 30 42 chr1 28046124 28046291 -254147373 + (CGG)n Simple_repeat Simple_repeat 2 166 0 278 58 14 58 chr1 28046306 28046375 -254147289 + (CGGGG)n Simple_repeat Simple_repeat 1 66 0 260 376 60 0 chr1 28047381 28047498 -254146166 - MIR SINE MIR -16 246 123 254 250 31 0 chr1 28047660 28047724 -254145940 + L2 LINE L2 3205 3270 -2 366 327 110 49 chr1 28048551 28049038 -254144626 - L2 LINE L2 0 3272 2741 474 157 0 0 chr1 28049313 28049396 -254144268 + (CA)n Simple_repeat Simple_repeat 2 84 0 546 320 106 48 chr1 28049762 28050222 -254143442 - L2 LINE L2 -23 3290 2774 890 206 0 0 chr1 28050222 28050377 -254143287 - FRAM SINE Alu -10 156 2 546 320 106 48 chr1 28050377 28050448 -254143216 - L2 LINE L2 -539 2774 2709 2224 111 0 0 chr1 28050450 28050757 -254142907 - AluSq SINE Alu -6 307 1 1330 186 43 36 chr1 28050764 28051202 -254142462 + L1MB7 LINE L1 5696 6170 -14 799 270 165 42 chr1 28051210 28051540 -254142124 - L2 LINE L2 -598 2716 2301 2290 88 0 3 chr1 28051540 28051837 -254141827 + AluSc SINE Alu 1 296 -13 799 270 165 42 chr1 28051837 28052010 -254141654 - L2 LINE L2 -1013 2301 2151 325 252 211 0 chr1 28052262 28052385 -254141279 - MER5B DNA MER1_type -3 175 27 275 288 45 54 chr1 28052568 28052679 -254140985 + MER81 DNA DNA 3 112 -2 1841 116 6 98 chr1 28052896 28053223 -254140441 - AluSx SINE Alu -15 297 1 933 194 0 0 chr1 28053225 28053380 -254140284 - FRAM SINE Alu -11 155 1 487 226 25 98 chr1 28053437 28053624 -254140040 + L1ME3 LINE L1 5945 6113 -49 2154 110 27 0 chr1 28053624 28053923 -254139741 + AluSx SINE Alu 1 307 -5 487 226 25 98 chr1 28053923 28053970 -254139694 + L1ME3 LINE L1 6113 6162 0 641 172 0 31 chr1 28054095 28054223 -254139441 - FRAM SINE Alu 0 176 53 241 367 28 0 chr1 28055192 28055301 -254138363 + L2 LINE L2 2672 2783 -531 821 210 110 27 chr1 28055301 28055475 -254138189 - MSTD LTR MaLR 0 396 238 249 33 0 0 chr1 28055475 28055505 -254138159 + (CAAG)n Simple_repeat Simple_repeat 3 32 0 821 210 110 27 chr1 28055505 28055665 -254137999 - MSTD LTR MaLR -158 238 1 354 228 276 0 chr1 28055743 28055888 -254137776 + L2 LINE L2 2881 3065 -248 202 151 170 19 chr1 28056362 28056415 -254137249 + MIR SINE MIR 87 147 -61 339 301 15 53 chr1 28056928 28057061 -254136603 - MIR SINE MIR -116 146 19 272 214 71 0 chr1 28057356 28057426 -254136238 - MER3 DNA MER1_type 0 209 135 2301 88 0 0 chr1 28057426 28057723 -254135941 + AluSg SINE Alu 1 297 -13 1284 97 6 0 chr1 28057723 28057898 -254135766 + AluSc SINE Alu 132 307 -2 305 187 93 0 chr1 28057898 28057973 -254135691 - MER3 DNA MER1_type -73 136 55 545 231 112 12 chr1 28058212 28058286 -254135378 + MER5A DNA MER1_type 4 69 -120 1474 182 71 0 chr1 28058286 28058566 -254135098 + AluJo SINE Alu 1 300 -12 545 231 112 12 chr1 28058566 28058660 -254135004 + MER5A DNA MER1_type 69 189 0 227 277 27 98 chr1 28059772 28059956 -254133708 + MLT1K LTR MaLR 1 171 -417 401 270 8 16 chr1 28060083 28060209 -254133455 + LTR67 LTR ERVL 433 557 0 466 324 127 12 chr1 28060209 28060539 -254133125 + L1ME4a LINE L1 5738 6105 -16 180 0 0 0 chr1 28060549 28060569 -254133095 + (T)n Simple_repeat Simple_repeat 1 20 0 291 296 190 21 chr1 28060743 28060885 -254132779 - MIR SINE MIR -79 183 18 1958 112 35 11 chr1 28060981 28061268 -254132396 + AluSx SINE Alu 1 294 -18 545 345 125 13 chr1 28061405 28061718 -254131946 + L2 LINE L2 2965 3312 -1 330 298 35 28 chr1 28061704 28061845 -254131819 + MIR3 SINE MIR 4 145 -63 * 180 270 54 40 chr1 28063008 28063082 -254130582 + MIR3 SINE MIR 9 83 -125 1218 167 0 23 chr1 28064396 28064612 -254129052 - AluJb SINE Alu -18 294 84 305 269 54 0 chr1 28065914 28066007 -254127657 + MER103 DNA DNA 2 99 -67 552 293 41 37 chr1 28066239 28066481 -254127183 - MIR SINE MIR 0 262 20 485 330 23 17 chr1 28067452 28067628 -254126036 + MIR3 SINE MIR 30 206 -2 268 135 135 0 chr1 28067863 28067915 -254125749 + MIR SINE MIR 88 146 -62 308 323 116 6 chr1 28069258 28069422 -254124242 + L2 LINE L2 2639 2820 -494 806 295 30 4 chr1 28069441 28069678 -254123986 + MIR SINE MIR 19 261 -1 291 263 10 176 chr1 28069801 28069931 -254123733 - L2 LINE L2 -39 3274 3124 2136 109 0 7 chr1 28069931 28070224 -254123440 - AluSx SINE Alu -21 291 1 291 263 10 176 chr1 28070224 28070306 -254123358 - L2 LINE L2 -189 3124 3124 1931 172 0 10 chr1 28070306 28070620 -254123044 + AluSx SINE Alu 1 311 -1 291 263 10 176 chr1 28070620 28070707 -254122957 - L2 LINE L2 -189 3124 3024 202 313 164 52 chr1 28070723 28071033 -254122631 + L2 LINE L2 2916 3260 -12 284 170 0 0 chr1 28071690 28071743 -254121921 - MER66B LTR ERV1 -139 347 295 643 234 82 6 chr1 28071748 28071919 -254121745 + MIR SINE MIR 46 229 -33 401 175 135 56 chr1 28072033 28072159 -254121505 + MIR SINE MIR 26 161 -101 430 231 175 7 chr1 28072302 28072445 -254121219 - MER5B DNA MER1_type -2 176 10 575 239 129 7 chr1 28072458 28072613 -254121051 - MER5B DNA MER1_type -2 176 3 371 188 21 0 chr1 28073178 28073274 -254120390 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 882 305 191 3 chr1 28073297 28073912 -254119752 - L2 LINE L2 0 3313 2562 199 270 0 32 chr1 28073911 28073974 -254119690 - MIR3 SINE MIR -54 154 94 * 444 261 14 49 chr1 28074139 28074281 -254119383 + MIR3 SINE MIR 57 193 -15 243 314 59 8 chr1 28074391 28074509 -254119155 + MIR SINE MIR 18 141 -67 366 355 130 0 chr1 28075810 28075979 -254117685 - MIR SINE MIR -9 253 63 266 360 84 22 chr1 28076656 28076834 -254116830 + L2 LINE L2 3083 3271 -1 454 177 33 29 chr1 28077083 28078030 -254115634 + (TG)n Simple_repeat Simple_repeat 1 950 0 439 190 35 29 chr1 28078110 28078284 -254115380 + (TG)n Simple_repeat Simple_repeat 1 175 0 281 178 23 8 chr1 28078392 28078521 -254115143 + (TG)n Simple_repeat Simple_repeat 1 131 0 385 215 34 23 chr1 28078534 28078711 -254114953 + (TG)n Simple_repeat Simple_repeat 2 180 0 375 195 34 18 chr1 28078738 28079068 -254114596 + (TG)n Simple_repeat Simple_repeat 1 335 0 186 141 31 16 chr1 28079094 28079158 -254114506 + (TG)n Simple_repeat Simple_repeat 1 65 0 183 191 21 11 chr1 28079256 28079350 -254114314 + (TG)n Simple_repeat Simple_repeat 1 95 0 271 326 11 21 chr1 28080882 28080977 -254112687 - MIR3 SINE MIR -41 167 74 1980 93 0 7 chr1 28081429 28081698 -254111966 - AluSg SINE Alu -14 296 30 243 0 0 0 chr1 28081732 28081759 -254111905 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2182 107 0 16 chr1 28081775 28082085 -254111579 + AluSx SINE Alu 1 305 -7 1749 98 8 0 chr1 28082984 28083219 -254110445 - AluSg/x SINE Alu -8 302 66 2066 128 7 0 chr1 28083219 28083507 -254110157 - AluSx SINE Alu -21 291 1 2289 115 23 99 chr1 28083601 28083765 -254109899 + L1MA8 LINE L1 5621 5796 -495 1724 151 48 3 chr1 28083765 28084056 -254109608 + AluSx SINE Alu 1 304 -8 2289 115 23 99 chr1 28084056 28084070 -254109594 + L1MA8 LINE L1 5796 5809 -482 1866 172 13 0 chr1 28084070 28084378 -254109286 + AluJo SINE Alu 1 312 0 2289 115 23 99 chr1 28084378 28084570 -254109094 + L1MA8 LINE L1 5809 5925 -366 2406 66 3 0 chr1 28084570 28084875 -254108789 + AluSx SINE Alu 1 306 -6 2289 115 23 99 chr1 28084875 28085114 -254108550 + L1MA8 LINE L1 5925 6181 -110 235 171 0 0 chr1 28085116 28085157 -254108507 - MER116 DNA Mariner -38 42 2 30 0 0 0 chr1 28085249 28085279 -254108385 + AT_rich Low_complexity Low_complexity 1 30 0 368 309 125 0 chr1 28085325 28085461 -254108203 - MIR SINE MIR -57 205 53 763 251 90 9 chr1 28086136 28086347 -254107317 + MIR SINE MIR 35 262 0 437 297 130 54 chr1 28086491 28086730 -254106934 + L3 LINE CR1 1263 1519 -58 202 233 17 50 chr1 28086794 28086854 -254106810 - MER5A DNA MER1_type -99 90 33 191 328 0 0 chr1 28087984 28088048 -254105616 - MIR SINE MIR -20 242 179 345 299 107 17 chr1 28088517 28088694 -254104970 - MIR SINE MIR -3 205 9 229 313 135 0 chr1 28088772 28088868 -254104796 + MIR SINE MIR 32 140 -122 219 288 0 0 chr1 28088962 28089021 -254104643 + MIR SINE MIR 86 144 -64 383 304 69 12 chr1 28089596 28089807 -254103857 - MIR SINE MIR -3 259 34 399 284 108 14 chr1 28090169 28090317 -254103347 + MIR SINE MIR 44 205 -57 235 285 114 16 chr1 28090366 28090489 -254103175 - MIR SINE MIR -26 236 102 639 261 128 4 chr1 28090743 28090969 -254102695 + MIR SINE MIR 8 261 -1 283 311 19 9 chr1 28092690 28092796 -254100868 + MIR3 SINE MIR 69 175 -33 425 276 83 13 chr1 28093142 28093298 -254100366 + MIR SINE MIR 60 226 -36 194 333 65 14 chr1 28093629 28093761 -254099903 - MIR SINE MIR -38 170 36 575 278 101 29 chr1 28093783 28094023 -254099641 + L1ME4a LINE L1 5573 5826 -295 1134 104 0 0 chr1 28094026 28094180 -254099484 + AluSq SINE Alu 1 154 -159 243 256 56 89 chr1 28094193 28094283 -254099381 + MIR SINE MIR 106 192 -70 332 301 81 0 chr1 28094678 28094849 -254098815 + MIR SINE MIR 58 242 -20 653 217 23 0 chr1 28095094 28095400 -254098264 + GA-rich Low_complexity Low_complexity 1 313 0 419 186 0 8 chr1 28095417 28095535 -254098129 + GA-rich Low_complexity Low_complexity 1 117 0 265 364 42 0 chr1 28097026 28097144 -254096520 + MIR3 SINE MIR 83 205 -3 245 321 46 9 chr1 28097860 28097969 -254095695 + MIR SINE MIR 33 145 -117 195 294 59 0 chr1 28098225 28098276 -254095388 - MIR SINE MIR -110 152 99 390 225 90 107 chr1 28098610 28098788 -254094876 - MIR SINE MIR -57 205 31 186 303 81 10 chr1 28099534 28099633 -254094031 + MIR SINE MIR 18 123 -139 2043 115 3 0 chr1 28100169 28100456 -254093208 - AluSx SINE Alu -11 301 14 1941 152 0 3 chr1 28100489 28100785 -254092879 - AluSx SINE Alu -17 295 1 207 0 0 0 chr1 28100942 28100965 -254092699 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 237 283 87 22 chr1 28102400 28102492 -254091172 - MIR3 SINE MIR -27 181 84 601 270 46 6 chr1 28103687 28103861 -254089803 + MIR SINE MIR 15 195 -67 180 250 0 0 chr1 28104479 28104519 -254089145 + L2 LINE L2 3179 3218 -95 568 228 67 22 chr1 28105024 28105204 -254088460 + L2 LINE L2 2013 2200 -1114 979 89 0 0 chr1 28105213 28105337 -254088327 + AluSg SINE Alu 1 124 -186 1112 237 78 63 chr1 28105337 28105757 -254087907 + L2 LINE L2 2280 2692 -622 2330 50 0 0 chr1 28105757 28106036 -254087628 + AluY SINE Alu 1 279 -32 312 27 0 0 chr1 28106036 28106073 -254087591 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1112 237 78 63 chr1 28106073 28106268 -254087396 + L2 LINE L2 2691 2905 -409 1640 245 67 80 chr1 28107171 28107342 -254086322 + MLT1G1 LTR MaLR 1 173 -422 1517 133 118 19 chr1 28107342 28107613 -254086051 - AluJo SINE Alu -14 298 1 1640 245 67 80 chr1 28107613 28108042 -254085622 + MLT1G1 LTR MaLR 173 593 -2 463 361 65 36 chr1 28108517 28108963 -254084701 + L2 LINE L2 2814 3272 0 272 242 72 2 chr1 28109423 28109518 -254084146 - MIR SINE MIR -81 127 20 441 281 71 71 chr1 28109550 28109670 -254083994 + MIR SINE MIR 23 145 -117 1833 171 0 0 chr1 28109670 28109974 -254083690 + AluJb SINE Alu 5 308 -4 441 281 71 71 chr1 28109974 28110077 -254083587 + MIR SINE MIR 144 246 -16 389 320 0 0 chr1 28110920 28111023 -254082641 - L1MC4 LINE L1 -1326 6716 6614 335 348 0 0 chr1 28110969 28111058 -254082606 + L1MC4 LINE L1 6614 6702 -1340 * 1800 137 0 20 chr1 28111070 28111362 -254082302 - AluSx SINE Alu -26 286 1 253 301 6 60 chr1 28111429 28111612 -254082052 + L2 LINE L2 2915 3087 -185 2051 144 0 0 chr1 28112064 28112376 -254081288 + AluSx SINE Alu 1 312 0 2405 71 0 0 chr1 28112394 28112703 -254080961 + AluY SINE Alu 1 309 -2 288 254 32 0 chr1 28112727 28112790 -254080874 - MIR SINE MIR -110 152 88 472 309 75 15 chr1 28113958 28114159 -254079505 - MIR SINE MIR -44 218 6 220 362 49 38 chr1 28114427 28114612 -254079052 + L2 LINE L2 3081 3267 -5 376 326 16 8 chr1 28114891 28115020 -254078644 + MIR SINE MIR 21 150 -112 420 20 0 0 chr1 28115120 28115169 -254078495 + (ATG)n Simple_repeat Simple_repeat 2 50 0 1822 129 28 3 chr1 28115171 28115458 -254078206 - AluJb SINE Alu -18 294 1 297 335 49 18 chr1 28115524 28115688 -254077976 + MIR SINE MIR 60 228 -34 288 254 102 17 chr1 28116559 28116677 -254076987 + MIR SINE MIR 17 144 -118 1999 100 0 4 chr1 28116683 28116954 -254076710 + AluSc SINE Alu 1 270 -39 453 133 0 0 chr1 28116954 28117029 -254076635 + Alu SINE Alu 235 309 -2 386 239 54 0 chr1 28117036 28117128 -254076536 + MIR SINE MIR 158 254 -8 329 265 140 17 chr1 28117178 28117415 -254076249 - L2 LINE L2 -263 3009 2739 424 268 133 0 chr1 28117674 28117838 -254075826 + MLT1J2 LTR MaLR 46 195 -255 739 274 58 0 chr1 28117841 28118031 -254075633 + MLT1J1 LTR MaLR 238 438 -8 188 234 138 78 chr1 28119224 28119359 -254074305 - MIR SINE MIR -66 196 51 1551 213 0 3 chr1 28119419 28119719 -254073945 - AluJb SINE Alu -13 299 1 449 285 101 6 chr1 28119730 28119889 -254073775 - MIR SINE MIR -63 145 20 464 311 174 13 chr1 28120933 28121238 -254072426 + L2 LINE L2 2917 3270 -2 439 301 192 18 chr1 28121808 28122037 -254071627 + MLT1H LTR MaLR 3 271 -278 2202 90 10 0 chr1 28122167 28122466 -254071198 + AluSq SINE Alu 1 302 -11 202 243 39 87 chr1 28122705 28122808 -254070856 - MIR SINE MIR -55 207 110 3965 237 85 82 chr1 28122833 28124606 -254069058 + HAL1 LINE L1 8 1786 -721 3651 209 62 71 chr1 28124600 28125222 -254068442 + L1MB7 LINE L1 4012 4638 -1546 * 540 217 28 0 chr1 28125222 28125328 -254068336 + FLAM_C SINE Alu 17 125 -18 3651 209 62 71 chr1 28125328 28125982 -254067682 + L1MB7 LINE L1 4638 5296 -888 2172 121 3 0 chr1 28125982 28126287 -254067377 + AluSx SINE Alu 1 306 -6 3651 209 62 71 chr1 28126287 28126409 -254067255 + L1MB7 LINE L1 5296 5418 -766 1837 149 0 0 chr1 28126409 28126684 -254066980 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr1 28126688 28126712 -254066952 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3651 209 62 71 chr1 28126712 28126765 -254066899 + L1MB7 LINE L1 5421 5473 -711 1653 168 10 10 chr1 28126765 28127113 -254066551 + AluJo SINE Alu 1 312 0 2065 99 0 0 chr1 28127120 28127441 -254066223 + AluSq SINE Alu 1 321 0 3651 209 62 71 chr1 28127441 28128064 -254065600 + L1MB7 LINE L1 5479 6183 -1 1147 275 51 11 chr1 28128092 28128463 -254065201 + HAL1 LINE L1 1823 2208 -299 243 0 0 0 chr1 28128466 28128493 -254065171 + (TG)n Simple_repeat Simple_repeat 2 28 0 2126 229 78 31 chr1 28128493 28128629 -254065035 + L1ME1 LINE L1 5421 5549 -617 2152 85 41 0 chr1 28128629 28128923 -254064741 + AluSp SINE Alu 1 306 -7 2126 229 78 31 chr1 28128923 28128958 -254064706 + L1ME1 LINE L1 5549 5581 -585 1711 160 0 39 chr1 28128958 28129264 -254064400 - AluJb SINE Alu -18 294 1 2126 229 78 31 chr1 28129264 28129772 -254063892 + L1ME1 LINE L1 5581 6133 -33 1460 177 76 11 chr1 28129878 28130155 -254063509 + AluJb SINE Alu 1 295 -17 2213 201 64 10 chr1 28130210 28130693 -254062971 + MLT1J LTR MaLR 1 509 -2 215 125 0 0 chr1 28130825 28130857 -254062807 + L2 LINE L2 3221 3252 -20 247 311 85 28 chr1 28130918 28131024 -254062640 + L2 LINE L2 3161 3272 0 744 297 93 41 chr1 28131059 28131595 -254062069 + MLT1K LTR MaLR 25 588 0 192 258 81 32 chr1 28132801 28132863 -254060801 + MER5A DNA MER1_type 67 131 -58 430 285 111 17 chr1 28133052 28133224 -254060440 + MIR SINE MIR 31 218 -44 375 169 26 169 chr1 28133317 28133471 -254060193 + MIR SINE MIR 81 212 -50 250 226 81 0 chr1 28134340 28134402 -254059262 - L2 LINE L2 0 3313 3247 192 191 106 0 chr1 28134856 28134903 -254058761 + L2 LINE L2 3259 3310 -3 1094 265 73 2 chr1 28135129 28135531 -254058133 + MLT1H LTR MaLR 16 549 0 202 324 59 0 chr1 28135534 28135602 -254058062 - MIR3 SINE MIR -52 156 85 290 252 138 8 chr1 28135903 28136026 -254057638 + MIR SINE MIR 124 262 0 581 274 101 10 chr1 28136107 28136315 -254057349 - MIR SINE MIR 0 262 36 2444 92 0 0 chr1 28136447 28136750 -254056914 + AluSq SINE Alu 1 303 -10 225 0 0 0 chr1 28136751 28136776 -254056888 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 262 226 81 0 chr1 28137080 28137142 -254056522 - L2 LINE L2 0 3313 3247 2232 107 10 0 chr1 28137592 28137890 -254055774 - AluSq SINE Alu -12 301 1 3813 139 11 7 chr1 28137890 28138500 -254055164 + MER41B LTR ERV1 23 635 0 181 390 62 27 chr1 28138695 28138841 -254054823 + L2 LINE L2 3122 3272 0 793 238 76 24 chr1 28140377 28140528 -254053136 + MIR SINE MIR 32 200 -62 1658 193 11 0 chr1 28140528 28140829 -254052835 - AluJo SINE Alu 0 304 1 793 238 76 24 chr1 28140829 28140885 -254052779 + MIR SINE MIR 200 252 -10 271 327 34 47 chr1 28140885 28141206 -254052458 + L1ME4a LINE L1 5625 5941 -180 2407 97 3 0 chr1 28142794 28143093 -254050571 - AluSp SINE Alu -13 300 1 444 338 7 19 chr1 28143358 28143512 -254050152 + MER5B DNA MER1_type 3 154 -24 286 263 68 51 chr1 28143543 28143661 -254050003 - MIR3 SINE MIR -54 154 35 843 211 96 24 chr1 28143717 28143925 -254049739 - MIR SINE MIR -27 235 13 2149 131 0 0 chr1 28144405 28144710 -254048954 - AluSx SINE Alu -2 310 6 293 208 106 105 chr1 28144939 28145114 -254048550 + MIR SINE MIR 8 191 -64 636 210 210 9 chr1 28145310 28145539 -254048125 + ORSL DNA AcHobo 1 275 0 343 307 77 91 chr1 28147025 28147162 -254046502 + L2 LINE L2 2841 2978 -294 2265 114 23 0 chr1 28147162 28147468 -254046196 - AluSp SINE Alu 0 313 1 343 307 77 91 chr1 28147468 28147528 -254046136 + L2 LINE L2 2978 3037 -235 2254 108 7 0 chr1 28147528 28147823 -254045841 - AluSg SINE Alu -13 297 1 343 307 77 91 chr1 28147823 28148041 -254045623 + L2 LINE L2 3037 3251 -21 433 256 83 43 chr1 28148062 28148233 -254045431 - MIR SINE MIR -62 146 12 816 254 25 8 chr1 28148576 28148812 -254044852 + L1ME3 LINE L1 5466 5705 -465 * 2747 135 7 52 chr1 28148809 28149348 -254044316 + L1MB8 LINE L1 5523 6037 -141 1009 179 44 88 chr1 28149447 28149546 -254044118 + L1ME3 LINE L1 5878 5980 -182 2067 142 3 19 chr1 28149546 28149863 -254043801 + AluJo SINE Alu 1 312 0 1009 179 44 88 chr1 28149863 28150060 -254043604 + L1ME3 LINE L1 5980 6161 -1 273 240 164 0 chr1 28150614 28150718 -254042946 - MIR SINE MIR -56 152 32 549 219 31 23 chr1 28151529 28151657 -254042007 - MIR SINE MIR -105 157 29 269 192 19 0 chr1 28152407 28152459 -254041205 - L2 LINE L2 0 3272 3220 820 266 46 18 chr1 28152519 28152770 -254040894 - MIR SINE MIR -6 256 1 2303 138 28 35 chr1 28152799 28152846 -254040818 + Tigger2a DNA MER2_type 9 55 -2653 2100 134 3 7 chr1 28152846 28153145 -254040519 - AluSx SINE Alu -14 298 1 2303 138 28 35 chr1 28153145 28153526 -254040138 + Tigger2a DNA MER2_type 55 434 0 271 287 53 32 chr1 28153862 28153956 -254039708 + MIR SINE MIR 87 182 -80 620 157 128 0 chr1 28153979 28154081 -254039583 + FLAM_C SINE Alu 1 115 -18 644 256 36 10 chr1 28154307 28154502 -254039162 + MIR3 SINE MIR 5 204 -4 964 273 41 0 chr1 28154927 28155147 -254038517 - MIR SINE MIR -6 256 28 2176 127 13 0 chr1 28155150 28155458 -254038206 - AluSx SINE Alu 0 312 1 191 301 36 12 chr1 28155476 28155559 -254038105 - MIR SINE MIR -67 195 111 227 279 47 0 chr1 28155652 28155738 -254037926 - MIR SINE MIR 0 262 173 206 288 15 15 chr1 28155766 28155832 -254037832 - MIR SINE MIR -177 85 20 2395 93 0 0 chr1 28155903 28156204 -254037460 + AluSg SINE Alu 2 302 -8 384 274 111 7 chr1 28157067 28157202 -254036462 - MIR SINE MIR -101 161 13 229 299 0 15 chr1 28157316 28157383 -254036281 + L2 LINE L2 3176 3241 -31 365 309 38 1 chr1 28157729 28157864 -254035800 - MIR SINE MIR -74 134 4 552 241 137 30 chr1 28158296 28158566 -254035098 + L1ME4a LINE L1 5608 5906 -215 687 232 0 0 chr1 28159356 28159498 -254034166 - FLAM_A SINE Alu 0 142 1 282 275 55 11 chr1 28160309 28160400 -254033264 + L2 LINE L2 2990 3084 -188 374 321 58 0 chr1 28160432 28160569 -254033095 - MIR SINE MIR -89 173 29 242 344 73 26 chr1 28160630 28160781 -254032883 + L2 LINE L2 3077 3234 -38 229 223 55 49 chr1 28161153 28161254 -254032410 + MIR SINE MIR 8 106 -102 978 129 76 0 chr1 28161460 28161631 -254032033 - MER5A DNA MER1_type -3 186 3 320 250 170 0 chr1 28161925 28162037 -254031627 - MIR3 SINE MIR -45 163 33 203 253 110 34 chr1 28162768 28162914 -254030750 + L2 LINE L2 2910 3066 -206 245 208 69 69 chr1 28163006 28163078 -254030586 + L2 LINE L2 3234 3305 -8 273 279 132 23 chr1 28163422 28163439 -254030225 - L3 LINE CR1 -89 1488 1474 2340 117 0 0 chr1 28163439 28163737 -254029927 - AluSx SINE Alu -14 298 1 273 279 132 23 chr1 28163737 28163848 -254029816 - L3 LINE CR1 -103 1474 1346 469 365 75 56 chr1 28164096 28164652 -254029012 - L3 LINE CR1 -749 828 262 3295 165 25 40 chr1 28164655 28164844 -254028820 + L1MB7 LINE L1 5455 5645 -539 2176 174 147 58 chr1 28164844 28165236 -254028428 + MER68 LTR ERV1 1 451 -111 2077 128 3 16 chr1 28165236 28165549 -254028115 - AluSp SINE Alu 0 313 5 2176 174 147 58 chr1 28165549 28165672 -254027992 + MER68 LTR ERV1 451 562 0 3295 165 25 40 chr1 28165672 28166130 -254027534 + L1MB7 LINE L1 5645 6092 -92 2271 114 0 0 chr1 28166130 28166427 -254027237 + AluSx SINE Alu 1 297 -15 3295 165 25 40 chr1 28166427 28166494 -254027170 + L1MB7 LINE L1 6092 6159 -25 255 170 0 0 chr1 28166494 28166541 -254027123 + (TA)n Simple_repeat Simple_repeat 2 48 0 251 111 0 22 chr1 28166541 28166586 -254027078 - Alu SINE Alu -6 302 259 440 121 25 242 chr1 28166635 28166916 -254026748 + L1MC4 LINE L1 7807 8026 -16 333 89 11 56 chr1 28167431 28167521 -254026143 + (TC)n Simple_repeat Simple_repeat 2 87 0 529 294 107 10 chr1 28167661 28167950 -254025714 - L1ME4a LINE L1 -226 5895 5579 605 234 157 4 chr1 28168231 28168479 -254025185 + L1ME4a LINE L1 5812 6097 -24 243 0 0 0 chr1 28168619 28168646 -254025018 + (A)n Simple_repeat Simple_repeat 1 27 0 183 266 84 84 chr1 28168708 28168851 -254024813 - MIR3 SINE MIR 0 208 66 255 61 0 0 chr1 28169048 28169081 -254024583 + (TG)n Simple_repeat Simple_repeat 2 34 0 294 238 211 27 chr1 28170403 28170550 -254023114 + MER5A DNA MER1_type 9 182 -7 707 240 69 6 chr1 28170561 28170736 -254022928 + MIR SINE MIR 63 248 -14 4667 79 8 21 chr1 28170745 28171403 -254022261 + L1PB2 LINE L1 5500 6148 -3 745 306 102 25 chr1 28171480 28172150 -254021514 + L2 LINE L2 2545 3270 -2 197 261 65 65 chr1 28172601 28172693 -254020971 - MIR SINE MIR -50 212 121 192 330 45 11 chr1 28172708 28172796 -254020868 - MIR SINE MIR -11 251 161 521 208 73 25 chr1 28172805 28172946 -254020718 + MIR SINE MIR 20 164 -64 * 646 257 214 0 chr1 28172936 28173142 -254020522 - MIR SINE MIR -11 251 2 209 344 143 11 chr1 28173278 28173627 -254020037 + L2 LINE L2 2382 2776 -538 1557 162 101 85 chr1 28173716 28174038 -254019626 + MLT1D LTR MaLR 4 338 -167 3106 158 10 57 chr1 28174038 28174619 -254019045 + MLT2B3 LTR ERVL 1 554 0 1557 162 101 85 chr1 28174619 28174790 -254018874 + MLT1D LTR MaLR 338 505 0 208 306 156 69 chr1 28174930 28175090 -254018574 + L2 LINE L2 3063 3236 -36 457 241 157 60 chr1 28175158 28175314 -254018350 - MIR SINE MIR -11 251 67 1877 161 0 7 chr1 28175314 28175605 -254018059 + AluJb SINE Alu 1 289 -23 457 241 157 60 chr1 28175605 28175664 -254018000 - MIR SINE MIR -195 67 15 204 187 33 132 chr1 28175743 28175834 -254017830 - MIR SINE MIR -180 82 1 1577 181 0 59 chr1 28176702 28177005 -254016659 - AluJo SINE Alu -24 288 4 582 257 29 38 chr1 28177011 28177226 -254016438 - MIR SINE MIR -8 254 41 2547 64 0 10 chr1 28177635 28177946 -254015718 + AluY SINE Alu 1 308 -3 670 287 158 4 chr1 28178031 28178296 -254015368 - L2 LINE L2 -3 3310 3005 2332 99 0 3 chr1 28178988 28179291 -254014373 - AluSx SINE Alu -10 302 1 198 0 0 0 chr1 28180615 28180637 -254013027 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 28182210 28182232 -254011432 + AT_rich Low_complexity Low_complexity 1 22 0 1959 128 69 9 chr1 28182855 28183175 -254010489 + MER44D DNA MER2_type 1 609 0 201 298 53 0 chr1 28183185 28183242 -254010422 - L2 LINE L2 -25 3247 3188 29 0 0 0 chr1 28183263 28183292 -254010372 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 0 36 chr1 28183299 28183348 -254010316 + (TAAA)n Simple_repeat Simple_repeat 1 74 0 203 0 0 36 chr1 28183348 28183376 -254010288 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2050 84 9 100 chr1 28183392 28183713 -254009951 - AluSx SINE Alu -20 292 1 838 129 32 8 chr1 28183717 28183841 -254009823 - FLAM_C SINE Alu -14 129 3 359 266 218 8 chr1 28184235 28184359 -254009305 - L2 LINE L2 0 3272 3123 404 225 159 53 chr1 28185050 28185201 -254008463 + L2 LINE L2 3147 3313 0 1971 209 126 10 chr1 28185336 28185502 -254008162 + MER63C DNA MER1_type 257 402 -658 2110 132 0 0 chr1 28185502 28185789 -254007875 + AluJb SINE Alu 1 287 -25 2381 61 47 7 chr1 28185799 28186096 -254007568 + AluY SINE Alu 1 309 -2 2240 98 4 0 chr1 28186096 28186373 -254007291 - AluSp SINE Alu -35 278 1 1971 209 126 10 chr1 28186373 28186773 -254006891 + MER63C DNA MER1_type 408 902 -28 1770 168 0 14 chr1 28187738 28188035 -254005629 + AluJb SINE Alu 1 293 -19 405 241 0 52 chr1 28188176 28188292 -254005372 + MIR SINE MIR 30 139 -123 2510 68 0 0 chr1 28189368 28189664 -254004000 + AluY SINE Alu 1 296 -15 2301 106 7 0 chr1 28190095 28190397 -254003267 + AluSx SINE Alu 1 304 -8 375 260 60 10 chr1 28191226 28191326 -254002338 - MIR3 SINE MIR -31 177 73 2430 92 0 0 chr1 28191548 28191851 -254001813 + AluSc SINE Alu 1 303 -6 756 217 48 14 chr1 28192442 28192649 -254001015 - MER20 DNA MER1_type 0 219 6 1873 177 6 3 chr1 28193114 28193425 -254000239 + AluJb SINE Alu 1 312 0 1537 161 0 40 chr1 28193427 28193676 -253999988 + AluJb SINE Alu 1 239 -73 288 277 270 7 chr1 28193676 28193824 -253999840 - MIR SINE MIR 0 262 76 2185 115 3 3 chr1 28196555 28196850 -253996814 + AluSx SINE Alu 1 295 -17 223 330 130 9 chr1 28198156 28198271 -253995393 + MIR SINE MIR 20 148 -114 2679 191 70 26 chr1 28199447 28200064 -253993600 + L1MB5 LINE L1 5525 6168 -6 298 326 141 35 chr1 28201490 28201671 -253991993 + L2 LINE L2 2038 2198 -1116 1889 136 26 13 chr1 28201671 28201973 -253991691 + AluJb SINE Alu 1 306 -6 198 0 0 0 chr1 28201973 28201995 -253991669 + (TA)n Simple_repeat Simple_repeat 2 23 0 298 326 141 35 chr1 28201995 28202159 -253991505 + L2 LINE L2 2197 2421 -893 1458 94 0 11 chr1 28202686 28202877 -253990787 + AluSq SINE Alu 1 189 -124 261 0 0 0 chr1 28202877 28202906 -253990758 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1991 123 0 53 chr1 28202922 28203224 -253990440 + AluSq SINE Alu 1 286 -27 237 33 0 0 chr1 28203232 28203262 -253990402 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 484 268 21 49 chr1 28204820 28204962 -253988702 + MER5B DNA MER1_type 28 165 -13 3290 256 68 26 chr1 28206981 28209130 -253984534 + L1ME2 LINE L1 527 2779 -3301 22 0 0 0 chr1 28209220 28209242 -253984422 + AT_rich Low_complexity Low_complexity 1 22 0 236 160 0 0 chr1 28209250 28209300 -253984364 + L1ME2 LINE L1 3119 3168 -2912 2283 120 3 0 chr1 28209312 28209620 -253984044 - AluSx SINE Alu -3 309 1 4904 52 17 2 chr1 28209623 28210639 -253983025 + MER11A LTR ERVK 1 1266 0 538 280 69 47 chr1 28210688 28210748 -253982916 + L1ME2 LINE L1 3222 3279 -2801 2217 116 3 35 chr1 28210748 28211066 -253982598 + AluSx SINE Alu 5 312 0 538 280 69 47 chr1 28211066 28211323 -253982341 + L1ME2 LINE L1 3279 3546 -2534 665 210 8 0 chr1 28211338 28211462 -253982202 + FLAM_A SINE Alu 10 134 -8 2095 227 41 22 chr1 28211491 28211643 -253982021 + L1ME2 LINE L1 3565 3713 -2367 1938 130 3 11 chr1 28211643 28211957 -253981707 - AluSx SINE Alu 0 312 1 2095 227 41 22 chr1 28211957 28212504 -253981160 + L1ME2 LINE L1 3713 4323 -1757 * 13668 177 37 24 chr1 28212503 28213328 -253980336 + L1PB3 LINE L1 2589 3402 -3468 2379 102 3 0 chr1 28213328 28213633 -253980031 + AluSc SINE Alu 1 306 -3 13668 177 37 24 chr1 28213633 28214415 -253979249 + L1PB3 LINE L1 3402 4172 -2698 1733 134 4 30 chr1 28214415 28214677 -253978987 + AluSx SINE Alu 1 255 -57 13668 177 37 24 chr1 28214677 28215225 -253978439 + L1PB3 LINE L1 4172 4711 -2159 2101 126 0 10 chr1 28215225 28215545 -253978119 + AluSx SINE Alu 1 317 0 13668 177 37 24 chr1 28215545 28216772 -253976892 + L1PB3 LINE L1 4711 6046 -824 1969 116 58 4 chr1 28216772 28217047 -253976617 + AluSx SINE Alu 1 290 -22 13668 177 37 24 chr1 28217047 28217876 -253975788 + L1PB3 LINE L1 6046 6863 -7 2373 110 0 0 chr1 28217885 28218194 -253975470 + AluSq SINE Alu 1 309 -4 2809 202 61 61 chr1 28218204 28218441 -253975223 + L1ME2 LINE L1 4287 4523 -1575 1608 173 3 50 chr1 28218441 28218742 -253974922 - AluJb SINE Alu -25 287 1 2809 202 61 61 chr1 28218742 28218918 -253974746 + L1ME2 LINE L1 4523 4698 -1400 1999 137 55 0 chr1 28218918 28219211 -253974453 + AluSx SINE Alu 1 309 -3 2809 202 61 61 chr1 28219211 28219835 -253973829 + L1ME2 LINE L1 4698 5321 -777 2520 84 0 0 chr1 28219835 28220144 -253973520 + AluY SINE Alu 1 309 -2 2809 202 61 61 chr1 28220144 28220648 -253973016 + L1ME2 LINE L1 5321 5844 -254 1653 183 22 39 chr1 28220648 28220959 -253972705 - AluJo SINE Alu -6 306 1 2809 202 61 61 chr1 28220959 28221030 -253972634 + L1ME2 LINE L1 5844 5914 -184 236 125 0 0 chr1 28221077 28221117 -253972547 + MER3 DNA MER1_type 11 50 -159 279 147 0 174 chr1 28221125 28221191 -253972473 + L1ME2 LINE L1 6000 6041 -57 2308 102 13 0 chr1 28221191 28221494 -253972170 + AluSx SINE Alu 1 307 -5 279 147 0 174 chr1 28221494 28221536 -253972128 + L1ME2 LINE L1 6041 6089 -9 198 281 73 12 chr1 28224052 28224134 -253969530 - L2 LINE L2 -7 3306 3220 * 212 246 143 56 chr1 28224132 28224258 -253969406 - MIR3 SINE MIR -23 185 49 401 339 85 40 chr1 28224271 28224448 -253969216 + MER91A DNA MER1_type 1 185 -11 2204 108 6 22 chr1 28224564 28224880 -253968784 + AluSx SINE Alu 1 311 -1 266 252 224 9 chr1 28225406 28225513 -253968151 - MIR SINE MIR -62 146 17 29 0 0 0 chr1 28228418 28228447 -253965217 + GC_rich Low_complexity Low_complexity 1 29 0 38 108 0 0 chr1 28228888 28229045 -253964619 + GC_rich Low_complexity Low_complexity 1 157 0 1129 149 101 71 chr1 28229054 28229620 -253964044 - MER52A LTR ERV1 -1090 665 5 207 114 0 0 chr1 28229654 28229689 -253963975 + (CCG)n Simple_repeat Simple_repeat 3 37 0 260 148 25 37 chr1 28229709 28229790 -253963874 + (CCCG)n Simple_repeat Simple_repeat 3 82 0 201 218 0 0 chr1 28232126 28232171 -253961493 - MIR SINE MIR -63 145 104 385 274 5 22 chr1 28232188 28232310 -253961354 - MIR SINE MIR -46 216 98 3435 143 8 4 chr1 28232319 28232837 -253960827 - MLT2B1 LTR ERVL 0 520 1 244 279 101 0 chr1 28232911 28232990 -253960674 - L2 LINE L2 0 3313 3227 445 219 124 15 chr1 28233013 28233150 -253960514 - L2 LINE L2 0 3313 3162 462 277 107 34 chr1 28233173 28233379 -253960285 - MIR SINE MIR -36 226 6 2077 132 0 0 chr1 28233452 28233755 -253959909 + AluSx SINE Alu 1 303 -9 613 173 230 7 chr1 28233756 28233895 -253959769 - MIR SINE MIR -65 197 28 611 295 191 33 chr1 28234029 28234792 -253958872 - L2 LINE L2 0 3272 2400 705 251 18 66 chr1 28235291 28235310 -253958354 + MIR SINE MIR 8 26 -236 1186 194 14 0 chr1 28235310 28235526 -253958138 + MER20 DNA MER1_type 1 219 0 705 251 18 66 chr1 28235526 28235724 -253957940 + MIR SINE MIR 26 212 -50 841 252 54 8 chr1 28235803 28236045 -253957619 + MIR SINE MIR 10 262 0 1010 144 0 0 chr1 28237332 28237492 -253956172 - AluSg/x SINE Alu -16 296 137 828 101 0 0 chr1 28237827 28237936 -253955728 + AluSp/q SINE Alu 173 281 -32 1028 102 28 0 chr1 28237936 28238189 -253955475 + GA-rich Low_complexity Low_complexity 1 260 0 242 257 99 50 chr1 28238194 28238295 -253955369 + MIR SINE MIR 157 262 0 320 222 56 21 chr1 28238321 28238465 -253955199 + L1ME4a LINE L1 5962 6110 -11 1189 178 49 0 chr1 28239388 28239613 -253954051 + L1MB5 LINE L1 5743 5978 -206 730 146 108 0 chr1 28239620 28239750 -253953914 + L1MB5 LINE L1 6030 6173 -1 22 35 0 0 chr1 28239779 28239808 -253953856 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 28240253 28240281 -253953383 + AT_rich Low_complexity Low_complexity 1 28 0 930 159 43 119 chr1 28240545 28240822 -253952842 - LTR54B LTR ERV1 -241 257 2 881 259 61 11 chr1 28240884 28241147 -253952517 - L2 LINE L2 -2 3311 3036 1212 104 0 6 chr1 28243760 28243923 -253949741 + AluSq SINE Alu 1 162 -151 415 212 7 7 chr1 28243929 28244066 -253949598 + (CATG)n Simple_repeat Simple_repeat 4 140 0 1112 142 0 0 chr1 28244085 28244247 -253949417 + AluSg/x SINE Alu 139 300 -12 1704 150 18 0 chr1 28245116 28245402 -253948262 - AluJb SINE Alu -21 291 1 199 280 120 0 chr1 28245472 28245547 -253948117 + MIR SINE MIR 177 260 -2 2045 106 3 13 chr1 28245688 28245990 -253947674 + AluSx SINE Alu 1 299 -13 2145 110 0 0 chr1 28246703 28247002 -253946662 - AluSx SINE Alu -13 299 1 1682 174 0 37 chr1 28247010 28247308 -253946356 - AluJb SINE Alu -25 287 1 345 198 88 11 chr1 28247394 28247485 -253946179 + L1ME4a LINE L1 6003 6100 -21 1859 182 27 32 chr1 28247486 28247855 -253945809 + MLT1A2 LTR MaLR 8 374 0 433 129 8 2 chr1 28249285 28249412 -253944252 - MSTC LTR MaLR 0 428 271 1710 147 43 7 chr1 28249623 28249923 -253943741 + AluSx SINE Alu 1 311 -1 207 308 0 66 chr1 28249926 28250017 -253943647 + L2 LINE L2 2559 2643 -671 1265 122 5 31 chr1 28250240 28250462 -253943202 + AluSq SINE Alu 94 309 -4 2140 232 53 33 chr1 28250469 28251036 -253942628 + MER77 LTR ERV1 55 683 -4 1946 151 52 18 chr1 28251193 28251578 -253942086 - L1MB8 LINE L1 -2 6176 5779 1993 138 0 10 chr1 28251578 28251889 -253941775 - AluSx SINE Alu -4 308 1 356 259 301 7 chr1 28251934 28252077 -253941587 - MIR3 SINE MIR -1 207 23 1068 161 22 0 chr1 28252190 28252370 -253941294 - AluJo SINE Alu -12 300 117 625 215 22 7 chr1 28252706 28252841 -253940823 + MER5B DNA MER1_type 42 178 0 2077 203 81 40 chr1 28252855 28253169 -253940495 - MLT1F LTR MaLR -54 488 147 2070 117 0 25 chr1 28253169 28253486 -253940178 + AluSg SINE Alu 2 310 0 2077 203 81 40 chr1 28253486 28253640 -253940024 - MLT1F LTR MaLR -395 147 1 500 279 22 7 chr1 28253854 28253990 -253939674 + MER5B DNA MER1_type 1 138 -40 1844 178 20 0 chr1 28303997 28304300 -253889364 - AluSx SINE Alu -3 309 1 2204 99 0 7 chr1 28304430 28304767 -253888897 - AluSg SINE Alu 0 335 1 773 235 37 63 chr1 28304847 28305115 -253888549 - MIR SINE MIR 0 262 2 599 289 39 14 chr1 28305684 28305892 -253887772 + MIR SINE MIR 50 262 0 4488 45 26 0 chr1 28306539 28307115 -253886549 - LTR10C LTR ERV1 0 591 1 519 211 7 70 chr1 28307124 28307410 -253886254 + MER4C LTR ERV1 1 349 -315 460 180 180 117 chr1 28307379 28307438 -253886226 + MER4C LTR ERV1 165 219 -246 * 2193 107 4 0 chr1 28307438 28307741 -253885923 - AluSx SINE Alu 0 307 4 460 180 180 117 chr1 28307741 28307963 -253885701 + MER4C LTR ERV1 219 465 0 24 32 0 0 chr1 28308230 28308261 -253885403 + AT_rich Low_complexity Low_complexity 1 31 0 6396 119 5 53 chr1 28308263 28308404 -253885260 - L1MC1 LINE L1 -6 6327 6181 1688 123 12 0 chr1 28308404 28308647 -253885017 - AluSx SINE Alu -8 304 59 6396 119 5 53 chr1 28308647 28308876 -253884788 - L1MC1 LINE L1 -152 6181 5943 2276 101 3 19 chr1 28308876 28309183 -253884481 - AluSx SINE Alu -10 302 1 6396 119 5 53 chr1 28309183 28309850 -253883814 - L1MC1 LINE L1 -390 5943 5245 2112 118 4 0 chr1 28309850 28310167 -253883497 - AluSg SINE Alu 0 318 1 6396 119 5 53 chr1 28310167 28310195 -253883469 - L1MC1 LINE L1 -1088 5245 5217 2581 77 0 0 chr1 28310195 28310506 -253883158 - AluY SINE Alu 0 311 1 6396 119 5 53 chr1 28310506 28310630 -253883034 - L1MC1 LINE L1 -1116 5217 5186 524 122 0 0 chr1 28310691 28310765 -253882899 + AluS SINE Alu 3 76 -236 1258 135 0 0 chr1 28310865 28311043 -253882621 + AluSg/x SINE Alu 131 308 -4 186 320 0 0 chr1 28311168 28311218 -253882446 - MIR SINE MIR -83 125 76 2433 81 7 0 chr1 28311519 28311828 -253881836 - AluSp SINE Alu -2 311 1 352 269 21 103 chr1 28311889 28312131 -253881533 + L2 LINE L2 2953 3174 -139 755 204 0 0 chr1 28312133 28312265 -253881399 - FLAM_C SINE Alu -1 132 1 318 26 0 0 chr1 28312271 28312310 -253881354 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 1849 159 27 0 chr1 28312317 28312613 -253881051 - AluJo SINE Alu -8 304 1 2081 145 0 3 chr1 28312621 28312924 -253880740 - AluSx SINE Alu -10 302 1 561 211 78 28 chr1 28312927 28313107 -253880557 + L2 LINE L2 3113 3301 -12 2542 80 0 6 chr1 28313133 28313447 -253880217 + AluSx SINE Alu 1 312 0 667 178 10 122 chr1 28313581 28313778 -253879886 + MIR SINE MIR 49 223 -39 228 310 42 0 chr1 28313802 28313873 -253879791 - MIR SINE MIR -21 241 168 317 289 52 10 chr1 28313877 28313974 -253879690 + L1ME3A LINE L1 6065 6165 -5 346 247 0 0 chr1 28313992 28314073 -253879591 - MIR SINE MIR -84 178 98 717 224 20 7 chr1 28314075 28314227 -253879437 + AluSg/x SINE Alu 119 272 -40 2151 116 3 14 chr1 28314243 28314548 -253879116 + AluSx SINE Alu 1 302 0 344 277 8 39 chr1 28314681 28314811 -253878853 - L1ME LINE L1 -368 5753 5628 193 250 0 0 chr1 28314814 28314858 -253878806 - MIR SINE MIR -76 132 89 225 220 153 0 chr1 28314877 28314936 -253878728 + MER91A DNA MER1_type 2 69 -127 654 276 151 31 chr1 28315114 28315465 -253878199 - L2 LINE L2 0 3313 2921 1897 185 0 6 chr1 28315581 28315895 -253877769 - AluJb SINE Alu 0 312 1 199 179 39 141 chr1 28316130 28316208 -253877456 + MIR SINE MIR 7 76 -186 738 293 8 26 chr1 28316527 28316793 -253876871 - MIR SINE MIR 0 262 2 1479 134 9 17 chr1 28317524 28317755 -253875909 + AluJo SINE Alu 40 268 -44 339 257 28 18 chr1 28318460 28318569 -253875095 - MIR SINE MIR -52 210 101 548 177 0 0 chr1 28318572 28318668 -253874996 + AluJ/FLAM SINE Alu 2 97 -215 2393 108 0 0 chr1 28318712 28319017 -253874647 + AluSg SINE Alu 2 306 -4 2010 139 26 19 chr1 28319729 28319858 -253873806 + AluJb SINE Alu 1 128 -184 2342 105 0 3 chr1 28319858 28320163 -253873501 + AluSg SINE Alu 1 304 -6 2010 139 26 19 chr1 28320163 28320343 -253873321 + AluJb SINE Alu 128 312 0 240 380 63 7 chr1 28320582 28320724 -253872940 + L2 LINE L2 3164 3313 0 681 183 0 0 chr1 28320801 28320916 -253872748 + FLAM_C SINE Alu 1 115 -18 2427 82 0 0 chr1 28320940 28321234 -253872430 + AluY SINE Alu 1 294 -17 226 214 92 92 chr1 28321662 28321793 -253871871 + MIR3 SINE MIR 62 192 -16 315 243 0 14 chr1 28323051 28323125 -253870539 - L2 LINE L2 -18 3295 3223 27 29 0 0 chr1 28323180 28323214 -253870450 + AT_rich Low_complexity Low_complexity 1 34 0 238 243 84 56 chr1 28323219 28323326 -253870338 - L2 LINE L2 -209 3063 2954 2417 98 0 3 chr1 28323435 28323742 -253869922 - AluSx SINE Alu -6 306 1 182 292 77 0 chr1 28324379 28324444 -253869220 - MIR SINE MIR -74 188 119 919 144 43 53 chr1 28324471 28324599 -253869065 + MER5A DNA MER1_type 5 132 -57 1816 153 87 0 chr1 28324599 28324886 -253868778 - AluJb SINE Alu 0 312 1 919 144 43 53 chr1 28324886 28324944 -253868720 + MER5A DNA MER1_type 132 189 0 486 285 35 6 chr1 28324974 28325148 -253868516 + MIR SINE MIR 70 247 -15 284 335 128 28 chr1 28325167 28325591 -253868073 + L2 LINE L2 2775 3253 -19 * 670 232 43 0 chr1 28325588 28325752 -253867912 - MIR SINE MIR 0 262 92 221 282 55 82 chr1 28326022 28326132 -253867532 - MIR SINE MIR -140 122 16 293 221 44 0 chr1 28326663 28326731 -253866933 + L2 LINE L2 3200 3270 -2 2166 112 34 0 chr1 28326751 28327046 -253866618 - AluSx SINE Alu -7 305 1 430 226 83 44 chr1 28327520 28327701 -253865963 + MIR SINE MIR 21 208 -54 363 175 156 71 chr1 28327702 28327802 -253865862 - Charlie4 DNA MER1_type -2 1959 1840 2288 97 10 13 chr1 28327802 28328113 -253865551 + AluSx SINE Alu 1 310 -2 363 175 156 71 chr1 28328113 28328166 -253865498 - Charlie4 DNA MER1_type -121 1840 1793 2447 90 0 10 chr1 28328166 28328477 -253865187 + AluSc SINE Alu 1 308 -1 550 167 8 68 chr1 28328487 28328619 -253865045 + FLAM_A SINE Alu 4 127 -6 2350 57 64 0 chr1 28328801 28329081 -253864583 + AluY SINE Alu 1 298 -13 1029 170 112 4 chr1 28329221 28329462 -253864202 - Charlie4 DNA MER1_type -1665 296 30 2309 96 3 0 chr1 28329577 28329870 -253863794 + AluSp SINE Alu 1 294 -19 2406 77 3 3 chr1 28329870 28330167 -253863497 + AluSq SINE Alu 1 297 -16 2335 110 3 0 chr1 28330934 28331242 -253862422 - AluSq SINE Alu -4 309 1 2189 128 7 0 chr1 28331263 28331559 -253862105 - AluSx SINE Alu -14 298 1 1849 137 0 18 chr1 28331760 28332038 -253861626 - AluJb SINE Alu -8 304 32 2155 104 31 3 chr1 28332240 28332529 -253861135 + AluSg SINE Alu 1 297 -13 267 238 323 37 chr1 28336501 28336690 -253856974 + L3 LINE CR1 1212 1454 -123 2156 118 3 10 chr1 28336816 28337113 -253856551 + AluSx SINE Alu 1 295 -17 1548 137 0 0 chr1 28337115 28337326 -253856338 + AluSq SINE Alu 1 211 -102 1144 114 124 10 chr1 28337327 28337520 -253856144 + AluJb SINE Alu 78 292 -20 1847 100 8 0 chr1 28338133 28338374 -253855290 + AluSq SINE Alu 11 253 -60 221 305 51 45 chr1 28339243 28339420 -253854244 - MER5B DNA MER1_type 0 178 1 180 220 0 34 chr1 28340738 28340797 -253852867 - L2 LINE L2 -2 3270 3214 2994 0 0 0 chr1 28340974 28341285 -253852379 + AluYa5 SINE Alu 1 311 0 2276 77 40 0 chr1 28341458 28341756 -253851908 - AluSg SINE Alu 0 310 1 278 282 167 32 chr1 28342006 28342162 -253851502 - MIR SINE MIR -12 250 74 205 302 47 0 chr1 28342341 28342447 -253851217 - MIR3 SINE MIR -24 184 74 34 72 0 0 chr1 28342597 28342666 -253850998 + GC_rich Low_complexity Low_complexity 1 69 0 327 246 145 36 chr1 28343979 28344117 -253849547 - MIR3 SINE MIR -8 200 48 262 128 0 0 chr1 28344117 28344164 -253849500 - AluSg SINE Alu -1 307 261 2509 80 0 6 chr1 28344222 28344534 -253849130 + AluSx SINE Alu 1 310 -2 336 281 33 8 chr1 28345725 28345846 -253847818 - MIR3 SINE MIR -52 156 33 426 264 40 20 chr1 28346759 28346907 -253846757 - MIR SINE MIR -27 235 85 1851 101 36 0 chr1 28346911 28347158 -253846506 - AluSg SINE Alu -44 266 11 2172 103 34 0 chr1 28347331 28347623 -253846041 + AluSx SINE Alu 1 302 -10 293 286 82 0 chr1 28348758 28348856 -253844808 + MIR SINE MIR 47 152 -110 2096 153 0 6 chr1 28349836 28350149 -253843515 - AluJb SINE Alu -1 311 1 722 276 9 32 chr1 28350244 28350461 -253843203 - MIR SINE MIR 0 262 51 2255 196 24 41 chr1 28350793 28350845 -253842819 - Zaphod DNA AcHobo -123 3908 3857 1694 168 7 20 chr1 28350845 28351142 -253842522 + AluJo SINE Alu 1 293 -19 2255 196 24 41 chr1 28351142 28351530 -253842134 - Zaphod DNA AcHobo -174 3857 3480 2290 96 27 3 chr1 28351530 28351831 -253841833 + AluSx SINE Alu 5 312 0 2255 196 24 41 chr1 28351831 28352021 -253841643 - Zaphod DNA AcHobo -551 3480 3288 541 224 24 0 chr1 28352030 28352154 -253841510 - Zaphod DNA AcHobo -3371 660 534 1419 118 63 37 chr1 28352154 28352370 -253841294 - Tigger7 DNA MER2_type 0 2487 2261 2354 97 0 3 chr1 28352370 28352668 -253840996 + AluSg SINE Alu 1 297 -13 1419 118 63 37 chr1 28352668 28352722 -253840942 - Tigger7 DNA MER2_type -226 2261 2210 1025 153 6 0 chr1 28352727 28352897 -253840767 - Tigger7 DNA MER2_type -562 171 1 1684 230 26 67 chr1 28352904 28353370 -253840294 - Zaphod DNA AcHobo -3526 505 59 818 166 77 47 chr1 28353370 28353386 -253840278 - AluJo/FRAM SINE Alu -1 311 297 2468 82 0 0 chr1 28353386 28353689 -253839975 - AluSq SINE Alu -1 312 10 818 166 77 47 chr1 28353689 28353841 -253839823 - AluJo/FRAM SINE Alu -15 297 138 476 210 59 17 chr1 28354221 28354340 -253839324 + MIR3 SINE MIR 36 159 -49 854 150 0 0 chr1 28354404 28354537 -253839127 + FLAM_C SINE Alu 1 133 0 270 321 0 12 chr1 28354550 28354631 -253839033 - MER5B DNA MER1_type -32 146 67 430 309 22 11 chr1 28354631 28354809 -253838855 + ERVL LTR ERVL 1024 1203 -4451 2277 111 0 3 chr1 28354870 28355168 -253838496 + AluSx SINE Alu 1 297 -15 946 345 64 6 chr1 28355351 28355884 -253837780 + ERVL LTR ERVL 1298 1861 -3793 1362 262 77 50 chr1 28355962 28356267 -253837397 + L2 LINE L2 2331 2626 -687 2114 136 3 3 chr1 28356267 28356569 -253837095 - AluSx SINE Alu -10 302 1 1362 262 77 50 chr1 28356569 28356934 -253836730 + L2 LINE L2 2626 3013 -300 1379 78 12 0 chr1 28356936 28357103 -253836561 - AluSc SINE Alu -20 289 121 819 145 0 48 chr1 28357139 28357284 -253836380 + FLAM_C SINE Alu 6 143 0 601 293 75 0 chr1 28357300 28357512 -253836152 - LTR16A LTR ERVL -163 287 60 448 349 7 0 chr1 28357595 28357747 -253835917 + ERVL LTR ERVL 4779 4931 -833 769 126 0 70 chr1 28357762 28357905 -253835759 + FLAM_C SINE Alu 1 133 0 2157 116 34 0 chr1 28358000 28358294 -253835370 + AluSx SINE Alu 2 305 -7 509 341 19 0 chr1 28358815 28359029 -253834635 + LTR16A LTR ERVL 70 287 -163 345 329 25 13 chr1 28359590 28359748 -253833916 - MIR SINE MIR -22 240 81 244 253 160 0 chr1 28359766 28359841 -253833823 - MIR SINE MIR -4 258 172 324 251 186 39 chr1 28359862 28360141 -253833523 - L1MEd LINE L1 -3673 2456 2137 2336 99 0 0 chr1 28360231 28360523 -253833141 - AluSq SINE Alu -21 292 1 597 318 66 28 chr1 28360619 28360748 -253832916 - L1MEd LINE L1 -5138 981 858 1880 167 6 6 chr1 28360748 28361059 -253832605 - AluJb SINE Alu -1 311 1 597 318 66 28 chr1 28361059 28361426 -253832238 - L1MEd LINE L1 -5261 858 466 2415 105 0 0 chr1 28361449 28361753 -253831911 - AluSx SINE Alu -8 304 1 2267 112 0 10 chr1 28361765 28362068 -253831596 - AluSc SINE Alu -9 300 1 279 0 0 0 chr1 28362168 28362199 -253831465 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1578 166 48 4 chr1 28362201 28362472 -253831192 - AluJb SINE Alu -29 283 1 319 311 106 13 chr1 28362677 28362828 -253830836 - L1MEd LINE L1 -5944 175 11 2431 90 0 0 chr1 28362829 28363128 -253830536 - AluSq SINE Alu -14 299 1 239 202 95 24 chr1 28363247 28363331 -253830333 - MIR SINE MIR -56 206 117 2473 35 45 3 chr1 28363337 28363627 -253830037 - AluY SINE Alu -9 302 1 2268 99 30 0 chr1 28363947 28364250 -253829414 - AluSx SINE Alu 0 312 1 934 120 0 0 chr1 28364254 28364379 -253829285 - AluJb SINE Alu -187 125 1 782 263 45 12 chr1 28364475 28364718 -253828946 + MIR SINE MIR 12 262 0 2029 150 13 19 chr1 28364821 28365135 -253828529 + AluJb SINE Alu 1 312 0 275 131 70 0 chr1 28365137 28365199 -253828465 + FLAM_A SINE Alu 25 59 -73 221 57 29 0 chr1 28365233 28365268 -253828396 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 186 226 0 38 chr1 28365945 28365998 -253827666 - L3 LINE CR1 0 1577 1527 1404 85 0 0 chr1 28366070 28366247 -253827417 - AluSg/x SINE Alu -3 309 133 2033 151 0 7 chr1 28366248 28366547 -253827117 - AluSx SINE Alu -15 297 1 2264 95 7 3 chr1 28366547 28366841 -253826823 - AluSg SINE Alu -14 296 1 2420 94 0 3 chr1 28367335 28367644 -253826020 - AluSg SINE Alu 0 310 3 2422 84 0 3 chr1 28367646 28367943 -253825721 - AluSq SINE Alu -17 296 1 4870 244 92 32 chr1 28367944 28368351 -253825313 - L1M4 LINE L1 -1095 5051 4670 1603 82 0 5 chr1 28368351 28368546 -253825118 - AluSg SINE Alu -116 194 1 4870 244 92 32 chr1 28368546 28369669 -253823995 - L1M4 LINE L1 -1476 4670 3616 2153 136 0 13 chr1 28369669 28369977 -253823687 - AluJb SINE Alu -8 304 1 4870 244 92 32 chr1 28369977 28370706 -253822958 - L1M4 LINE L1 -2530 3616 2522 1047 99 0 0 chr1 28370707 28370838 -253822826 + AluSg SINE Alu 1 131 -179 727 138 0 0 chr1 28370951 28371060 -253822604 + AluSg/x SINE Alu 190 298 -12 544 145 0 0 chr1 28371067 28371150 -253822514 + FRAM/FAM SINE Alu 1 83 -102 756 300 12 0 chr1 28371186 28371306 -253822358 - AluSq SINE Alu -66 247 130 1508 125 177 4 chr1 28371306 28371554 -253822110 - AluSg1 SINE Alu -14 295 5 258 32 0 0 chr1 28371558 28371589 -253822075 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 756 300 12 0 chr1 28371589 28371706 -253821958 - AluSq SINE Alu -185 128 2 1034 122 6 64 chr1 28371717 28371864 -253821800 - AluJ SINE Alu -22 290 153 2564 164 40 8 chr1 28371864 28372335 -253821329 - MER66B LTR ERV1 0 486 1 1034 122 6 64 chr1 28372335 28372359 -253821305 - AluJ SINE Alu -159 153 129 474 196 161 0 chr1 28372363 28372475 -253821189 - AluJ SINE Alu -172 130 1 7405 155 77 37 chr1 28372475 28372819 -253820845 - L1MCa LINE L1 -4762 1664 1335 1998 137 43 3 chr1 28372819 28373118 -253820546 + AluJb SINE Alu 1 311 -1 7405 155 77 37 chr1 28373118 28374356 -253819308 - L1MCa LINE L1 -5091 1335 18 1873 147 3 48 chr1 28374358 28374672 -253818992 - AluJo SINE Alu -12 300 1 351 196 75 0 chr1 28374682 28374789 -253818875 - L1MEc LINE L1 -5581 815 701 1174 168 62 16 chr1 28374800 28375044 -253818620 + LTR54B LTR ERV1 1 255 -243 30 27 0 0 chr1 28375058 28375095 -253818569 + AT_rich Low_complexity Low_complexity 1 37 0 1237 168 9 0 chr1 28375562 28375788 -253817876 + LTR54 LTR ERV1 276 503 -7 800 241 93 31 chr1 28375793 28376050 -253817614 - L1MEc LINE L1 -5705 691 419 258 95 0 0 chr1 28376053 28376095 -253817569 + (TG)n Simple_repeat Simple_repeat 1 42 0 189 0 0 0 chr1 28376094 28376115 -253817549 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 1666 182 7 10 chr1 28376135 28376426 -253817238 - AluJb SINE Alu -22 290 1 200 217 0 0 chr1 28376479 28376525 -253817139 + A-rich Low_complexity Low_complexity 1 46 0 962 259 147 3 chr1 28376554 28376847 -253816817 - L1MEc LINE L1 -6026 370 36 200 213 0 64 chr1 28376872 28376919 -253816745 - MER5B DNA MER1_type -134 44 1 387 286 254 5 chr1 28377418 28377607 -253816057 - MIR SINE MIR -7 255 20 284 169 31 0 chr1 28377664 28377729 -253815935 - L1ME3A LINE L1 -5 6165 6099 2204 103 7 10 chr1 28377729 28378021 -253815643 - AluSq SINE Alu -16 297 7 235 195 0 0 chr1 28379874 28379915 -253813749 - L2 LINE L2 -12 3301 3261 220 245 20 0 chr1 28380055 28380104 -253813560 + L2 LINE L2 3263 3312 -1 180 77 0 0 chr1 28381877 28381903 -253811761 + (CATATA)n Simple_repeat Simple_repeat 5 30 0 28 0 0 0 chr1 28383689 28383717 -253809947 + AT_rich Low_complexity Low_complexity 1 28 0 2516 74 0 0 chr1 28383912 28384210 -253809454 - AluSc SINE Alu -11 298 1 434 243 61 40 chr1 28384633 28384781 -253808883 - MER58C DNA MER1_type -26 189 39 386 358 88 35 chr1 28384803 28385002 -253808662 + L2 LINE L2 2676 2896 -418 2276 94 7 10 chr1 28385002 28385301 -253808363 - AluSc SINE Alu -11 298 1 386 358 88 35 chr1 28385301 28385386 -253808278 + L2 LINE L2 2896 2975 -339 198 0 0 0 chr1 28385456 28385478 -253808186 + (GA)n Simple_repeat Simple_repeat 1 22 0 1902 162 0 0 chr1 28385478 28385756 -253807908 - AluJb SINE Alu -34 278 1 435 279 137 6 chr1 28386190 28386351 -253807313 - MIR SINE MIR -7 255 74 1116 154 0 28 chr1 28386540 28386722 -253806942 - AluJo SINE Alu -9 303 127 1917 148 7 7 chr1 28386809 28387106 -253806558 - AluJb SINE Alu -15 297 1 1689 160 85 3 chr1 28387116 28387398 -253806266 - AluSx SINE Alu -7 305 1 2446 103 0 0 chr1 28387550 28387862 -253805802 + AluSx SINE Alu 1 312 0 2379 103 0 3 chr1 28387866 28388176 -253805488 + AluSq SINE Alu 1 309 -4 22 0 0 0 chr1 28388202 28388224 -253805440 + AT_rich Low_complexity Low_complexity 1 22 0 1825 172 7 16 chr1 28388346 28388654 -253805010 - AluJb SINE Alu -7 305 1 2219 109 0 17 chr1 28388664 28388966 -253804698 - AluSx SINE Alu -15 297 1 2465 63 7 3 chr1 28389059 28389362 -253804302 - AluY SINE Alu -7 304 1 526 269 89 27 chr1 28389535 28389767 -253803897 + MIR SINE MIR 15 260 -2 926 245 51 16 chr1 28390742 28390995 -253802669 - MIR SINE MIR 0 262 1 2476 48 0 35 chr1 28391358 28391674 -253801990 - AluY SINE Alu -6 305 1 189 74 0 0 chr1 28393712 28393739 -253799925 + (CGG)n Simple_repeat Simple_repeat 3 29 0 348 238 50 10 chr1 28394351 28394452 -253799212 - MIR SINE MIR -35 227 123 670 228 47 29 chr1 28394879 28395050 -253798614 - MER69A DNA AcHobo -1 176 3 188 291 55 0 chr1 28395092 28395147 -253798517 + L2 LINE L2 3152 3209 -63 985 233 97 109 chr1 28395184 28395502 -253798162 + L1MC4a LINE L1 5519 5839 -1969 2437 87 0 0 chr1 28395502 28395800 -253797864 + AluSx SINE Alu 1 298 -14 985 233 97 109 chr1 28395800 28396194 -253797470 + L1MC4a LINE L1 5839 6222 -1586 1192 186 38 52 chr1 28396258 28396294 -253797370 - AluJo SINE Alu -9 303 268 2411 76 0 10 chr1 28396294 28396596 -253797068 + AluY SINE Alu 1 299 -12 1192 186 38 52 chr1 28396596 28396741 -253796923 - AluJo SINE Alu -44 268 125 2504 64 3 0 chr1 28396741 28397037 -253796627 + AluY SINE Alu 1 297 -14 1192 186 38 52 chr1 28397037 28397144 -253796520 - AluJo SINE Alu -187 125 18 548 230 94 37 chr1 28397176 28397422 -253796242 + L1MC4 LINE L1 6333 6564 -1329 2309 110 0 0 chr1 28397422 28397723 -253795941 + AluSx SINE Alu 1 301 -11 548 230 94 37 chr1 28397723 28397838 -253795826 + L1MC4 LINE L1 6564 6812 -1081 189 0 0 0 chr1 28398173 28398194 -253795470 + (A)n Simple_repeat Simple_repeat 1 21 0 2190 124 0 34 chr1 28398194 28398517 -253795147 + AluSx SINE Alu 1 312 0 238 259 197 53 chr1 28398522 28398795 -253794869 + L1MC5 LINE L1 7299 7626 -335 1960 132 13 31 chr1 28398795 28399113 -253794551 + AluSx SINE Alu 1 312 0 238 259 197 53 chr1 28399113 28399159 -253794505 + L1MC5 LINE L1 7626 7664 -297 280 250 13 26 chr1 28399716 28399792 -253793872 + MIR3 SINE MIR 117 191 -17 371 269 185 0 chr1 28400327 28400457 -253793207 - MIR SINE MIR -60 202 49 402 286 0 20 chr1 28400536 28400674 -253792990 + MIR3 SINE MIR 53 186 -22 212 292 0 31 chr1 28401402 28401467 -253792197 - MIR SINE MIR -60 148 86 2042 153 3 19 chr1 28401602 28401915 -253791749 - AluJo SINE Alu -4 308 1 2396 94 0 0 chr1 28402176 28402474 -253791190 + AluSx SINE Alu 1 298 -14 606 304 97 19 chr1 28402475 28402732 -253790932 - L2 LINE L2 -17 3296 3020 314 261 92 56 chr1 28403094 28403236 -253790428 - MIR3 SINE MIR -47 161 15 181 246 158 35 chr1 28404564 28404678 -253788986 + MIR SINE MIR 47 174 -88 2447 98 0 0 chr1 28405194 28405501 -253788163 + AluSx SINE Alu 1 307 -5 303 278 52 21 chr1 28405508 28405605 -253788059 - MIR SINE MIR -106 156 57 2425 104 3 0 chr1 28407733 28408041 -253785623 - AluSp SINE Alu -4 309 1 376 303 73 0 chr1 28408075 28408253 -253785411 + L1MC5 LINE L1 7735 7925 -36 379 266 104 19 chr1 28408406 28408560 -253785104 - MIR SINE MIR -68 194 28 684 261 28 17 chr1 28408736 28408916 -253784748 - MIR SINE MIR 0 262 81 366 23 0 0 chr1 28408937 28408980 -253784684 + (TG)n Simple_repeat Simple_repeat 2 44 0 2007 102 0 75 chr1 28408980 28409285 -253784379 - AluSx SINE Alu -28 284 3 531 104 42 31 chr1 28409300 28409396 -253784268 - L1MC1 LINE L1 -1 6332 6236 2389 116 0 0 chr1 28409673 28409983 -253783681 - AluSx SINE Alu -2 310 1 639 212 20 26 chr1 28410037 28410188 -253783476 + MIR3 SINE MIR 59 208 0 318 231 123 46 chr1 28410559 28410754 -253782910 - MLT1K LTR MaLR -22 566 357 563 303 40 70 chr1 28411060 28411335 -253782329 - L2 LINE L2 -1 3271 3004 437 100 44 33 chr1 28411335 28411425 -253782239 + L1MA8 LINE L1 6201 6291 0 563 303 40 70 chr1 28411425 28411449 -253782215 - L2 LINE L2 -268 3004 2981 394 267 75 117 chr1 28411748 28411812 -253781852 - L2 LINE L2 -39 3274 3209 1632 179 32 71 chr1 28411812 28412045 -253781619 - MLT1A1 LTR MaLR 0 365 151 2297 95 0 35 chr1 28412045 28412361 -253781303 - AluSc SINE Alu -4 305 1 1632 179 32 71 chr1 28412361 28412506 -253781158 - MLT1A1 LTR MaLR -214 151 2 394 267 75 117 chr1 28412506 28412693 -253780971 - L2 LINE L2 -104 3209 3038 2023 118 9 50 chr1 28412693 28413014 -253780650 - AluSx SINE Alu -4 308 1 394 267 75 117 chr1 28413014 28413094 -253780570 - L2 LINE L2 -275 3038 2956 2407 151 7 31 chr1 28413447 28413569 -253780095 - L1MB3 LINE L1 0 6183 6060 2045 156 3 0 chr1 28413569 28413871 -253779793 - AluSx SINE Alu -7 305 3 2407 151 7 31 chr1 28413871 28413974 -253779690 - L1MB3 LINE L1 -123 6060 5956 2292 102 0 7 chr1 28413974 28414277 -253779387 - AluSq SINE Alu -12 301 1 2407 151 7 31 chr1 28414277 28414494 -253779170 - L1MB3 LINE L1 -227 5956 5751 1731 181 3 20 chr1 28414517 28414821 -253778843 - AluJo SINE Alu -1 311 13 2250 136 0 0 chr1 28414883 28415185 -253778479 + AluSx SINE Alu 1 302 -10 271 317 135 0 chr1 28415185 28415393 -253778271 - L2 LINE L2 -618 2696 2461 229 238 250 52 chr1 28416044 28416108 -253777556 + L1ME3 LINE L1 5627 5677 -444 2112 129 0 39 chr1 28416108 28416419 -253777245 - AluSx SINE Alu -13 299 1 229 238 250 52 chr1 28416419 28416526 -253777138 + L1ME3 LINE L1 5677 5832 -289 992 179 40 31 chr1 28416545 28416768 -253776896 + L1ME3 LINE L1 5937 6161 -1 427 280 40 0 chr1 28416850 28416950 -253776714 + L2 LINE L2 3202 3305 -8 230 196 0 0 chr1 28417014 28417065 -253776599 - Alu SINE Alu 0 301 251 659 220 28 92 chr1 28417166 28417228 -253776436 - MIR SINE MIR -6 256 192 1090 166 0 0 chr1 28417228 28417391 -253776273 - FRAM SINE Alu -2 164 2 659 220 28 92 chr1 28417391 28417578 -253776086 - MIR SINE MIR -70 192 23 338 141 99 28 chr1 28417574 28417645 -253776019 + MIR SINE MIR 79 154 -108 * 241 303 0 15 chr1 28418246 28418312 -253775352 + MIR SINE MIR 30 94 -168 313 252 78 131 chr1 28418681 28418963 -253774701 - L1ME4a LINE L1 -121 6000 5734 1575 246 82 66 chr1 28419000 28419043 -253774621 - L1ME3A LINE L1 -5 6165 6124 1825 109 74 4 chr1 28419043 28419300 -253774364 + AluSq SINE Alu 24 298 -15 1575 246 82 66 chr1 28419300 28420103 -253773561 - L1ME3A LINE L1 -46 6124 5318 788 182 73 6 chr1 28420630 28420795 -253772869 - MLT1A2 LTR MaLR -28 362 187 237 258 0 0 chr1 28420799 28420817 -253772847 + GA-rich Low_complexity Low_complexity 2 19 -48 3386 169 25 68 chr1 28420817 28421538 -253772126 - LTR8 LTR ERV1 -1 690 1 237 258 0 0 chr1 28421538 28421585 -253772079 + GA-rich Low_complexity Low_complexity 18 67 0 1852 149 6 38 chr1 28421590 28421905 -253771759 - AluJo SINE Alu -3 309 5 931 136 32 7 chr1 28421937 28422092 -253771572 - MLT1A2 LTR MaLR -211 163 5 664 193 93 21 chr1 28422106 28422246 -253771418 + MIR SINE MIR 70 219 -43 2653 156 36 45 chr1 28422254 28422613 -253771051 + MLT1F LTR MaLR 11 372 -170 315 0 0 0 chr1 28422613 28422648 -253771016 + (TA)n Simple_repeat Simple_repeat 2 36 0 1997 147 19 3 chr1 28422652 28422959 -253770705 - AluJo SINE Alu 0 312 1 2653 156 36 45 chr1 28422959 28423121 -253770543 + MLT1F LTR MaLR 375 532 -10 191 300 40 0 chr1 28423197 28423247 -253770417 - L2 LINE L2 -10 3262 3211 402 326 36 26 chr1 28423323 28423516 -253770148 - MIR3 SINE MIR -8 200 6 321 325 68 18 chr1 28424305 28424468 -253769196 - MIR3 SINE MIR -28 180 10 2097 111 17 10 chr1 28424542 28424840 -253768824 + AluSx SINE Alu 1 300 -12 338 214 116 112 chr1 28424840 28424961 -253768703 + MIR SINE MIR 24 148 -114 1289 72 17 0 chr1 28424961 28425141 -253768523 + L1MA8 LINE L1 6106 6288 -3 338 214 116 112 chr1 28425141 28425243 -253768421 + MIR SINE MIR 148 248 -14 254 257 211 18 chr1 28425377 28425486 -253768178 + MIR SINE MIR 25 154 -108 285 136 0 0 chr1 28425587 28425631 -253768033 + Alu SINE Alu 252 295 -7 321 280 61 0 chr1 28425635 28425767 -253767897 + L1MC5 LINE L1 7649 7788 -173 849 142 8 0 chr1 28425776 28425910 -253767754 + AluSg/x SINE Alu 175 309 0 2234 118 0 10 chr1 28425918 28426214 -253767450 + AluSx SINE Alu 1 293 -19 2355 93 0 0 chr1 28426233 28426545 -253767119 + AluSq SINE Alu 1 312 -1 269 226 85 9 chr1 28426562 28426668 -253766996 + L1MC5 LINE L1 7823 7936 -25 641 286 35 15 chr1 28426815 28427018 -253766646 + MIR SINE MIR 43 249 -13 573 254 17 35 chr1 28427031 28427204 -253766460 + MIR SINE MIR 22 191 -71 263 293 51 70 chr1 28427301 28427458 -253766206 + L2 LINE L2 1129 1282 -2032 180 97 0 0 chr1 28427738 28427769 -253765895 + (A)n Simple_repeat Simple_repeat 1 31 0 2280 78 3 0 chr1 28427771 28428064 -253765600 + AluSc SINE Alu 2 295 -14 411 283 117 41 chr1 28428143 28428159 -253765505 - L2 LINE L2 -1 3271 3258 1928 144 3 13 chr1 28428159 28428458 -253765206 - AluJb SINE Alu -16 296 1 411 283 117 41 chr1 28428458 28428586 -253765078 - L2 LINE L2 -14 3258 3116 552 297 46 42 chr1 28428628 28428911 -253764753 - L2 LINE L2 -814 2500 2217 1071 285 155 12 chr1 28428936 28429427 -253764237 - MLT1L LTR MaLR -12 603 43 713 314 18 4 chr1 28429488 28429714 -253763950 + MIR SINE MIR 20 248 -14 2099 125 0 7 chr1 28430045 28430349 -253763315 + AluSx SINE Alu 1 302 -10 2114 131 0 0 chr1 28430512 28430817 -253762847 - AluSc SINE Alu 0 309 5 200 280 83 61 chr1 28430832 28430964 -253762700 + L2 LINE L2 3137 3271 -1 2170 107 0 7 chr1 28430981 28431302 -253762362 - AluSq SINE Alu 0 313 1 250 281 53 18 chr1 28431302 28431416 -253762248 + MIR3 SINE MIR 70 187 -21 500 132 0 0 chr1 28431633 28431709 -253761955 + AluSg/x SINE Alu 172 247 -63 223 269 75 67 chr1 28431716 28431850 -253761814 + L2 LINE L2 3137 3271 -1 372 296 87 5 chr1 28433038 28433219 -253760445 - MIR SINE MIR -39 223 30 655 226 18 24 chr1 28433991 28434155 -253759509 - MIR SINE MIR -71 191 29 1438 174 73 0 chr1 28434243 28434518 -253759146 + AluJb SINE Alu 1 295 -17 2129 97 0 0 chr1 28434526 28434809 -253758855 + AluSx SINE Alu 1 284 -24 222 0 79 0 chr1 28434809 28434847 -253758817 + (CA)n Simple_repeat Simple_repeat 2 42 0 698 251 51 15 chr1 28435178 28435373 -253758291 - MIR SINE MIR -2 260 59 2118 133 0 0 chr1 28435392 28435701 -253757963 - AluSx SINE Alu -3 309 1 997 96 0 0 chr1 28435701 28435836 -253757828 - AluSq/x SINE Alu -177 135 1 802 194 38 6 chr1 28436602 28436793 -253756871 + AluJo SINE Alu 119 314 0 1739 134 72 3 chr1 28436793 28437083 -253756581 + AluSx SINE Alu 1 310 -2 243 295 0 0 chr1 28437358 28437419 -253756245 - MIR SINE MIR -143 119 59 2309 95 0 6 chr1 28437549 28437864 -253755800 - AluSp SINE Alu 0 313 1 394 287 35 14 chr1 28437870 28438013 -253755651 - L2 LINE L2 0 3313 3168 429 238 30 0 chr1 28438077 28438178 -253755486 + MIR SINE MIR 38 141 -67 464 95 14 14 chr1 28438369 28438443 -253755221 - FRAM SINE Alu -77 99 26 227 252 128 2 chr1 28439220 28439321 -253754343 + MIR SINE MIR 55 147 -61 344 318 9 0 chr1 28439736 28439846 -253753818 - L2 LINE L2 0 3313 3203 438 243 164 13 chr1 28439927 28440079 -253753585 - MER5A DNA MER1_type -6 183 9 2155 97 7 3 chr1 28440528 28440826 -253752838 + AluSg SINE Alu 1 299 -11 420 303 12 31 chr1 28441513 28441675 -253751989 + MIR SINE MIR 51 209 -53 314 223 161 9 chr1 28441705 28441817 -253751847 - L2 LINE L2 -10 3303 3175 217 333 0 12 chr1 28441840 28441921 -253751743 - L2 LINE L2 -5 3267 3188 2245 102 0 13 chr1 28442946 28443251 -253750413 + AluSx SINE Alu 1 301 -11 211 255 0 0 chr1 28443276 28443323 -253750341 + L2 LINE L2 3248 3294 -19 386 303 29 77 chr1 28443365 28443573 -253750091 + MIR SINE MIR 20 217 -45 2190 108 3 3 chr1 28444198 28444505 -253749159 + AluSp SINE Alu 1 307 -6 223 311 0 0 chr1 28444567 28444628 -253749036 + MIR SINE MIR 103 163 -99 * 631 261 78 17 chr1 28444618 28444798 -253748866 - MIR SINE MIR -3 259 69 292 308 0 0 chr1 28444839 28444917 -253748747 + MIR SINE MIR 175 252 -10 2232 99 0 3 chr1 28445022 28445324 -253748340 - AluSq SINE Alu -12 301 1 259 242 45 15 chr1 28446150 28446216 -253747448 - L2 LINE L2 -1 3271 3204 207 0 0 0 chr1 28446454 28446477 -253747187 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1688 107 111 7 chr1 28446487 28446757 -253746907 + AluSg SINE Alu 1 298 -12 1691 155 10 17 chr1 28446765 28447062 -253746602 + AluJo SINE Alu 1 295 -17 580 254 18 100 chr1 28447071 28447247 -253746417 + MER102b DNA MER1_type 78 224 -1204 2342 71 3 7 chr1 28447247 28447555 -253746109 + AluSq SINE Alu 6 312 -1 580 254 18 100 chr1 28447555 28447657 -253746007 + MER102b DNA MER1_type 224 333 -8 356 283 100 0 chr1 28447709 28447829 -253745835 + MIR SINE MIR 106 237 -25 3041 112 89 49 chr1 28448988 28449038 -253744626 - MER39B LTR ERV1 -28 625 578 2254 101 3 0 chr1 28449038 28449344 -253744320 + AluSq SINE Alu 1 307 -6 3041 112 89 49 chr1 28449344 28449890 -253743774 - MER39B LTR ERV1 -75 578 5 282 263 45 51 chr1 28450934 28451090 -253742574 - L1ME3A LINE L1 -24 6146 5992 2235 99 0 3 chr1 28451682 28451984 -253741680 - AluSq SINE Alu -12 301 1 497 219 95 18 chr1 28451990 28452159 -253741505 - L1MC5 LINE L1 -54 7907 7726 1358 121 36 31 chr1 28452190 28452414 -253741250 + AluSg/x SINE Alu 77 301 -9 309 194 32 0 chr1 28452445 28452507 -253741157 + MER5A DNA MER1_type 39 102 -87 255 324 19 9 chr1 28452508 28452613 -253741051 + MER5A DNA MER1_type 66 171 -18 * 373 229 10 10 chr1 28452520 28452616 -253741048 - MER5A DNA MER1_type -66 123 28 517 259 196 2 chr1 28454556 28454765 -253738899 - MIR SINE MIR 0 262 13 425 252 87 0 chr1 28455620 28455735 -253737929 + MIR3 SINE MIR 76 200 -8 218 300 101 10 chr1 28455747 28455852 -253737812 - MIR3 SINE MIR -53 155 70 458 279 109 20 chr1 28457731 28457878 -253735786 - MER117 DNA MER1_type -31 166 7 267 217 0 0 chr1 28457889 28457949 -253735715 - MIR SINE MIR -68 140 81 764 113 0 0 chr1 28458251 28458357 -253735307 + AluJb SINE Alu 200 305 -7 182 315 123 14 chr1 28458359 28458432 -253735232 + MIR SINE MIR 30 110 -152 273 324 49 10 chr1 28458679 28458781 -253734883 - MIR3 SINE MIR -9 199 94 458 255 72 20 chr1 28459696 28459849 -253733815 + MIR3 SINE MIR 30 190 -18 429 288 65 6 chr1 28460324 28460494 -253733170 - MIR3 SINE MIR -22 186 7 267 260 51 102 chr1 28460745 28460827 -253732837 + L2 LINE L2 2925 2995 -277 1693 155 35 0 chr1 28460827 28461111 -253732553 - AluJb SINE Alu -18 294 1 267 260 51 102 chr1 28461111 28461205 -253732459 + L2 LINE L2 2995 3092 -180 728 182 101 76 chr1 28461225 28461423 -253732241 - MIR SINE MIR 0 262 60 354 303 66 0 chr1 28461478 28461600 -253732064 + L2 LINE L2 3136 3265 -7 347 306 69 74 chr1 28461601 28461817 -253731847 + L3 LINE CR1 1297 1511 -66 873 171 116 68 chr1 28461958 28462092 -253731572 + ORSL DNA AcHobo 2 128 -147 2239 108 0 0 chr1 28462092 28462387 -253731277 + AluSx SINE Alu 2 296 -16 873 171 116 68 chr1 28462387 28462412 -253731252 + ORSL DNA AcHobo 128 150 -125 1655 165 64 14 chr1 28462412 28462709 -253730955 - AluJb SINE Alu 0 312 1 873 171 116 68 chr1 28462709 28462799 -253730865 + ORSL DNA AcHobo 150 264 -11 288 283 36 48 chr1 28462820 28463050 -253730614 + L1MC4a LINE L1 2286 6173 -1 218 284 74 0 chr1 28463107 28463188 -253730476 + MIR SINE MIR 14 100 -162 480 247 82 19 chr1 28463215 28463373 -253730291 + MIR SINE MIR 84 251 -11 223 294 44 0 chr1 28464580 28464648 -253729016 - L3b LINE CR1 -188 1395 1325 213 339 191 11 chr1 28464772 28464961 -253728703 + MIR SINE MIR 29 251 -11 279 300 77 23 chr1 28464998 28465128 -253728536 - L3b LINE CR1 -104 1479 1343 302 322 81 23 chr1 28466118 28466292 -253727372 - MIR3 SINE MIR -22 186 3 376 231 92 31 chr1 28466932 28467062 -253726602 - MIR SINE MIR -75 187 50 305 256 60 23 chr1 28467917 28468050 -253725614 + L2 LINE L2 2954 3091 -181 289 293 37 0 chr1 28468087 28468169 -253725495 - L2 LINE L2 0 3272 3188 680 252 112 9 chr1 28468171 28468385 -253725279 - MIR SINE MIR 0 262 27 419 306 60 33 chr1 28468415 28468598 -253725066 - L2 LINE L2 -82 3190 3003 201 254 30 15 chr1 28468609 28468676 -253724988 - L2 LINE L2 -609 2705 2638 713 255 151 74 chr1 28468711 28468944 -253724720 - L2 LINE L2 -2 3311 3097 2132 54 0 0 chr1 28468944 28469202 -253724462 + AluY SINE Alu 38 295 -16 713 255 151 74 chr1 28469202 28469214 -253724450 - L2 LINE L2 -216 3097 3087 1877 142 7 0 chr1 28469214 28469525 -253724139 + AluSx SINE Alu 1 313 0 713 255 151 74 chr1 28469525 28469654 -253724010 - L2 LINE L2 -226 3087 2906 856 254 160 15 chr1 28469654 28469985 -253723679 - L2 LINE L2 -587 2727 2349 1580 186 19 19 chr1 28470028 28470340 -253723324 + AluJo SINE Alu 1 312 0 668 150 16 94 chr1 28470344 28470471 -253723193 + FLAM_A SINE Alu 1 117 -16 595 269 9 67 chr1 28471404 28471627 -253722037 + MIR SINE MIR 41 250 -12 215 321 38 19 chr1 28471644 28471750 -253721914 - MIR SINE MIR -84 124 17 291 339 9 18 chr1 28472112 28472221 -253721443 + MIR SINE MIR 30 137 -71 819 193 18 41 chr1 28472224 28472395 -253721269 - FRAM SINE Alu 0 40 1 2192 131 0 0 chr1 28472414 28472726 -253720938 - AluSx SINE Alu 0 312 1 547 256 50 127 chr1 28472873 28473009 -253720655 + LTR37B LTR ERV1 1 146 -322 1774 159 14 0 chr1 28473009 28473299 -253720365 - AluJb SINE Alu -18 294 1 547 256 50 127 chr1 28473299 28473333 -253720331 + LTR37B LTR ERV1 146 181 -287 2085 100 4 0 chr1 28473333 28473649 -253720015 - AluSq SINE Alu 0 317 1 547 256 50 127 chr1 28473649 28473980 -253719684 + LTR37B LTR ERV1 181 465 -3 182 167 0 0 chr1 28473984 28474020 -253719644 + MIR SINE MIR 109 144 -118 1369 97 0 0 chr1 28674067 28674252 -253519412 + AluSg/x SINE Alu 104 288 -22 912 224 0 0 chr1 28674281 28674446 -253519218 + FRAM SINE Alu 2 166 0 1728 201 48 30 chr1 28674469 28674878 -253518786 + L1M4 LINE L1 3804 4223 -1923 2086 98 7 23 chr1 28674878 28675183 -253518481 + AluSx SINE Alu 1 300 -12 1728 201 48 30 chr1 28675183 28675235 -253518429 + L1M4 LINE L1 4223 4273 -1873 2338 97 0 0 chr1 28675242 28675550 -253518114 + AluSg SINE Alu 1 308 -2 415 111 111 0 chr1 28675794 28675866 -253517798 + MER116 DNA Mariner 1 80 0 2370 80 5 80 chr1 28676057 28676443 -253517221 + L1PA14 LINE L1 5804 6160 -1 2177 117 0 0 chr1 28676558 28676866 -253516798 - AluSx SINE Alu -4 308 1 537 284 57 0 chr1 28677253 28677394 -253516270 + MIR3 SINE MIR 17 165 -43 942 209 60 60 chr1 28677402 28677615 -253516049 - L1MC4 LINE L1 -13 8029 7814 2567 42 0 3 chr1 28677615 28677927 -253515737 + AluY SINE Alu 1 311 0 942 209 60 60 chr1 28677927 28678044 -253515620 - L1MC4 LINE L1 -227 7815 7699 1382 177 26 15 chr1 28678057 28678323 -253515341 - AluJo SINE Alu -30 282 14 2200 207 123 6 chr1 28678353 28678898 -253514766 - L1MC4 LINE L1 -365 7677 7069 2179 103 0 13 chr1 28679536 28679847 -253513817 - AluSg SINE Alu -1 309 3 2156 78 3 68 chr1 28679855 28680176 -253513488 - AluSp SINE Alu -13 300 1 1502 158 10 45 chr1 28680196 28680487 -253513177 - AluJo SINE Alu -31 281 1 1986 111 3 7 chr1 28680535 28680833 -253512831 + AluY SINE Alu 2 298 -13 1430 80 5 0 chr1 28680835 28681023 -253512641 + AluSp SINE Alu 1 189 -124 1239 99 0 0 chr1 28681023 28681194 -253512470 + AluSp SINE Alu 138 308 -5 704 199 77 13 chr1 28681197 28681353 -253512311 + AluJo/FRAM SINE Alu 137 302 0 379 170 0 39 chr1 28681618 28681847 -253511817 + AluJo SINE Alu 1 302 0 2363 43 7 0 chr1 28682045 28682345 -253511319 + AluY SINE Alu 1 302 -9 2182 104 0 0 chr1 28682433 28682730 -253510934 + AluSx SINE Alu 1 297 -15 608 194 8 22 chr1 28682748 28682882 -253510782 + MER103 DNA DNA 32 163 -3 1793 142 0 4 chr1 28683006 28683281 -253510383 + AluSg SINE Alu 5 278 -32 183 42 0 0 chr1 28683281 28683305 -253510359 + (TAA)n Simple_repeat Simple_repeat 1 24 0 264 274 0 29 chr1 28683319 28683347 -253510317 + GA-rich Low_complexity Low_complexity 1 28 -71 2065 120 3 0 chr1 28683347 28683656 -253510008 + AluSx SINE Alu 1 310 -2 264 274 0 29 chr1 28683656 28683729 -253509935 + GA-rich Low_complexity Low_complexity 28 99 0 189 0 0 0 chr1 28683898 28683919 -253509745 + (TTTAA)n Simple_repeat Simple_repeat 4 24 0 2099 112 0 0 chr1 28683920 28684215 -253509449 - AluSx SINE Alu -17 295 1 189 234 43 0 chr1 28684323 28684370 -253509294 - MIR3 SINE MIR -3 205 157 369 0 0 0 chr1 28684563 28684604 -253509060 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1954 120 0 0 chr1 28684614 28684888 -253508776 - AluSx SINE Alu -38 274 1 214 391 20 20 chr1 28684893 28685044 -253508620 - L2 LINE L2 -228 3044 2894 355 81 0 32 chr1 28685800 28685862 -253507802 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1835 137 38 7 chr1 28685862 28686154 -253507510 - AluSx SINE Alu -11 301 1 488 286 100 75 chr1 28686181 28686448 -253507216 + L1MEc LINE L1 1053 1312 -5322 2225 97 0 3 chr1 28686448 28686748 -253506916 + AluSq SINE Alu 1 299 -14 488 286 100 75 chr1 28686748 28686918 -253506746 + L1MEc LINE L1 1312 1607 -5027 864 127 0 8 chr1 28687007 28687133 -253506531 + AluJo/FLAM SINE Alu 2 126 -176 429 153 42 0 chr1 28687133 28687205 -253506459 + AluJ/FRAM SINE Alu 225 299 -13 496 271 72 18 chr1 28687290 28687456 -253506208 - L1ME LINE L1 -459 5662 5488 4313 153 38 73 chr1 28687505 28687611 -253506053 + L1MB4 LINE L1 4779 4887 -1293 1576 150 97 4 chr1 28687611 28687878 -253505786 + AluJb SINE Alu 1 292 -20 4313 153 38 73 chr1 28687878 28688139 -253505525 + L1MB4 LINE L1 4887 5156 -1024 1262 163 123 47 chr1 28688139 28688416 -253505248 + AluJo SINE Alu 5 302 0 4313 153 38 73 chr1 28688416 28688614 -253505050 + L1MB4 LINE L1 5156 5360 -820 2320 84 3 3 chr1 28688614 28688924 -253504740 + AluSx SINE Alu 1 310 -2 4313 153 38 73 chr1 28688924 28689209 -253504455 + L1MB4 LINE L1 5360 5654 -526 611 90 0 0 chr1 28689209 28689287 -253504377 - MADE1 DNA Mariner -2 78 1 4313 153 38 73 chr1 28689287 28689391 -253504273 + L1MB4 LINE L1 5654 5760 -420 1991 134 3 19 chr1 28689391 28689705 -253503959 - AluSx SINE Alu -3 309 1 4313 153 38 73 chr1 28689705 28689846 -253503818 + L1MB4 LINE L1 5760 5905 -275 2021 120 0 13 chr1 28689846 28689982 -253503682 + AluSx SINE Alu 1 137 -175 1971 118 52 0 chr1 28689982 28690269 -253503395 + AluSx SINE Alu 1 302 -10 2021 120 0 13 chr1 28690269 28690431 -253503233 + AluSx SINE Alu 137 295 -17 1885 131 3 38 chr1 28690436 28690749 -253502915 + AluSx SINE Alu 11 312 0 4313 153 38 73 chr1 28690749 28690942 -253502722 + L1MB4 LINE L1 5909 6025 -155 1664 185 0 35 chr1 28690942 28691256 -253502408 - AluJb SINE Alu -9 303 1 4313 153 38 73 chr1 28691256 28691368 -253502296 + L1MB4 LINE L1 6025 6139 -41 2221 90 0 7 chr1 28691370 28691670 -253501994 + AluSq SINE Alu 1 298 -15 789 88 9 0 chr1 28691680 28691794 -253501870 + AluSc SINE Alu 174 288 -21 246 241 24 0 chr1 28691902 28691987 -253501677 + L1ME3 LINE L1 6075 6161 -3 1988 103 41 0 chr1 28691995 28692285 -253501379 - AluSp SINE Alu -11 302 1 237 159 0 0 chr1 28692285 28692323 -253501341 + L1ME3 LINE L1 6118 6155 -7 265 242 33 66 chr1 28692629 28692720 -253500944 + MIR SINE MIR 38 125 -83 1672 148 0 39 chr1 28692816 28693121 -253500543 - AluJb SINE Alu -19 293 1 626 244 144 0 chr1 28693574 28693734 -253499930 - MER5A DNA MER1_type 0 189 7 497 242 16 0 chr1 28693736 28693860 -253499804 + L2 LINE L2 2192 2317 -997 2298 90 0 0 chr1 28693861 28694171 -253499493 - AluY SINE Alu 0 311 2 1059 63 0 0 chr1 28694183 28694310 -253499354 - AluSp SINE Alu -186 127 1 1325 273 145 39 chr1 28694310 28694658 -253499006 + L2 LINE L2 2310 2620 -693 1848 111 35 14 chr1 28694658 28694946 -253498718 - AluSx SINE Alu -18 294 1 1325 273 145 39 chr1 28694946 28695469 -253498195 + L2 LINE L2 2620 3297 -16 483 209 86 29 chr1 28695495 28695634 -253498030 + MIR SINE MIR 114 260 -2 2224 111 0 0 chr1 28696886 28697193 -253496471 - AluSg SINE Alu -3 307 1 469 259 41 14 chr1 28697899 28698046 -253495618 + MIR SINE MIR 32 182 -80 207 235 66 153 chr1 28698124 28698307 -253495357 + L2 LINE L2 3017 3183 -89 534 219 103 13 chr1 28699564 28699719 -253493945 + L2 LINE L2 2291 2459 -855 2235 89 0 0 chr1 28699719 28700011 -253493653 - AluSx SINE Alu -20 292 1 722 214 148 0 chr1 28700040 28700222 -253493442 + L2 LINE L2 3105 3313 0 259 256 51 13 chr1 28700229 28700307 -253493357 + MIR3 SINE MIR 77 157 -51 1593 157 18 14 chr1 28700349 28700649 -253493015 - AluJo SINE Alu 0 301 1 428 255 115 15 chr1 28700674 28700874 -253492790 + L2 LINE L2 2204 2423 -891 311 222 100 67 chr1 28701046 28701136 -253492528 + L2 LINE L2 3179 3271 -1 316 270 40 60 chr1 28701613 28701663 -253492001 - MIR SINE MIR -62 146 97 1592 154 95 0 chr1 28701663 28701936 -253491728 - AluSx SINE Alu -13 299 1 316 270 40 60 chr1 28701936 28702016 -253491648 - MIR SINE MIR -111 97 20 1955 118 0 22 chr1 28702073 28702386 -253491278 - AluSq SINE Alu -7 306 1 201 156 0 0 chr1 28702510 28702542 -253491122 + MER5A DNA MER1_type 135 166 -23 263 274 197 0 chr1 28702614 28702731 -253490933 - MER102a DNA MER1_type -29 301 162 593 285 35 25 chr1 28702890 28703090 -253490574 + MIR SINE MIR 35 236 -26 2148 119 0 0 chr1 28703174 28703484 -253490180 + AluSg SINE Alu 1 310 0 1746 134 7 39 chr1 28703526 28703831 -253489833 + AluJb SINE Alu 1 295 -17 188 250 42 0 chr1 28703831 28703879 -253489785 + MIR SINE MIR 190 239 -23 2579 209 135 32 chr1 28704130 28704268 -253489396 + L1ME3A LINE L1 5298 5420 -750 2321 84 0 10 chr1 28704268 28704577 -253489087 + AluSx SINE Alu 1 306 -6 2579 209 135 32 chr1 28704577 28705014 -253488650 + L1ME3A LINE L1 5420 5979 -191 1980 94 0 4 chr1 28705014 28705326 -253488338 + AluSq SINE Alu 20 330 0 2579 209 135 32 chr1 28705326 28705532 -253488132 + L1ME3A LINE L1 5979 6162 -8 362 250 164 23 chr1 28705776 28705904 -253487760 - L3 LINE CR1 -72 1505 1360 2226 83 0 0 chr1 28706305 28706595 -253487069 + AluY SINE Alu 1 290 -21 35 0 0 0 chr1 28706599 28706634 -253487030 + AT_rich Low_complexity Low_complexity 1 35 0 1650 143 0 0 chr1 28706712 28706964 -253486700 - AluSx SINE Alu -2 310 59 374 159 0 0 chr1 28707064 28707127 -253486537 + Alu SINE Alu 234 296 -6 2089 115 0 0 chr1 28707127 28707423 -253486241 + AluSx SINE Alu 1 296 -16 1950 120 7 7 chr1 28707424 28707724 -253485940 + AluSx SINE Alu 1 300 -12 834 78 0 0 chr1 28707764 28707879 -253485785 - AluSc SINE Alu -21 288 174 2221 90 0 7 chr1 28707889 28708189 -253485475 - AluSq SINE Alu -15 298 1 4335 153 38 72 chr1 28708191 28708303 -253485361 - L1MB4 LINE L1 -41 6139 6025 1664 185 0 35 chr1 28708303 28708617 -253485047 + AluJb SINE Alu 1 303 -9 4335 153 38 72 chr1 28708617 28708810 -253484854 - L1MB4 LINE L1 -155 6025 5827 1885 131 3 38 chr1 28708810 28709123 -253484541 - AluSx SINE Alu 0 312 11 2021 120 0 13 chr1 28709128 28709290 -253484374 - AluSx SINE Alu -17 295 137 1979 118 52 0 chr1 28709290 28709578 -253484086 - AluSx SINE Alu -9 303 1 2021 120 0 13 chr1 28709578 28709714 -253483950 - AluSx SINE Alu -175 137 1 4335 153 38 72 chr1 28709714 28709855 -253483809 - L1MB4 LINE L1 -357 5823 5679 1991 134 3 19 chr1 28709855 28710169 -253483495 + AluSx SINE Alu 1 309 -3 4335 153 38 72 chr1 28710169 28710273 -253483391 - L1MB4 LINE L1 -501 5679 5573 611 90 0 0 chr1 28710273 28710351 -253483313 + MADE1 DNA Mariner 1 78 -2 4335 153 38 72 chr1 28710351 28710636 -253483028 - L1MB4 LINE L1 -607 5573 5280 2320 84 3 3 chr1 28710636 28710946 -253482718 - AluSx SINE Alu -2 310 1 4335 153 38 72 chr1 28710946 28711141 -253482523 - L1MB4 LINE L1 -900 5280 5080 1293 165 122 54 chr1 28711141 28711420 -253482244 - AluJo SINE Alu 0 302 5 4335 153 38 72 chr1 28711420 28711681 -253481983 - L1MB4 LINE L1 -1100 5080 4887 1576 150 97 4 chr1 28711681 28711948 -253481716 - AluJb SINE Alu -20 292 1 4335 153 38 72 chr1 28711948 28712054 -253481610 - L1MB4 LINE L1 -1293 4887 4779 496 271 72 18 chr1 28712103 28712269 -253481395 + L1ME LINE L1 5488 5662 -459 429 153 42 0 chr1 28712354 28712426 -253481238 - AluJ/FRAM SINE Alu -13 299 225 864 127 0 8 chr1 28712426 28712552 -253481112 - AluJo/FLAM SINE Alu -176 126 2 472 288 100 77 chr1 28712641 28712811 -253480853 - L1MEc LINE L1 -5027 1607 1442 2225 97 0 3 chr1 28712811 28713111 -253480553 - AluSq SINE Alu -14 299 1 472 288 100 77 chr1 28713111 28713378 -253480286 - L1MEc LINE L1 -5192 1442 1053 1835 137 38 7 chr1 28713405 28713697 -253479967 + AluSx SINE Alu 1 301 -11 355 81 0 32 chr1 28713697 28713759 -253479905 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 214 391 20 20 chr1 28714515 28714666 -253478998 + L2 LINE L2 2894 3044 -228 1954 120 0 0 chr1 28714671 28714945 -253478719 + AluSx SINE Alu 1 274 -38 369 0 0 0 chr1 28714955 28714996 -253478668 + (CAA)n Simple_repeat Simple_repeat 2 42 0 189 234 43 0 chr1 28715189 28715236 -253478428 + MIR3 SINE MIR 157 205 -3 2099 112 0 0 chr1 28715344 28715639 -253478025 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr1 28715640 28715661 -253478003 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 2065 120 3 0 chr1 28715830 28716212 -253477452 - AluSx SINE Alu 0 383 1 183 42 0 0 chr1 28716254 28716278 -253477386 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1793 142 0 4 chr1 28716278 28716553 -253477111 - AluSg SINE Alu -32 278 5 608 194 8 22 chr1 28716677 28716811 -253476853 - MER103 DNA DNA -3 163 32 2195 102 0 0 chr1 28716829 28717124 -253476540 - AluSg SINE Alu -15 295 1 1830 117 57 7 chr1 28717187 28717469 -253476195 - AluSx SINE Alu -14 298 3 1337 139 147 45 chr1 28717576 28717842 -253475822 + AluJb SINE Alu 4 296 -16 2359 41 7 3 chr1 28717911 28718206 -253475458 - AluY SINE Alu -15 296 1 246 273 141 16 chr1 28718209 28718330 -253475334 - MLT1L LTR MaLR -49 566 431 495 0 0 0 chr1 28718352 28718407 -253475257 + (TG)n Simple_repeat Simple_repeat 2 56 0 2007 107 4 0 chr1 28718409 28718689 -253474975 - AluSx SINE Alu -30 282 2 382 319 112 21 chr1 28718809 28719050 -253474614 - MLT1L LTR MaLR -339 276 14 254 159 0 0 chr1 28719133 28719185 -253474479 + L1MB7 LINE L1 5663 5714 -460 1716 175 129 5 chr1 28719555 28719927 -253473737 + L1MB7 LINE L1 5706 6123 -61 1875 155 3 0 chr1 28719927 28720230 -253473434 - AluSx SINE Alu -8 304 1 2284 89 0 10 chr1 28720233 28720546 -253473118 - AluSp SINE Alu -3 310 1 1693 143 59 0 chr1 28720554 28720827 -253472837 - AluSx SINE Alu -23 289 1 2393 46 3 16 chr1 28722014 28722318 -253471346 + AluY SINE Alu 1 300 -11 2042 123 0 10 chr1 28722554 28722855 -253470809 + AluSx SINE Alu 1 298 -14 1361 167 0 0 chr1 28722963 28723179 -253470485 - AluJo SINE Alu -11 301 86 2134 88 24 14 chr1 28723185 28723343 -253470321 - AluSx SINE Alu -14 298 134 2118 71 29 32 chr1 28723343 28723651 -253470013 - AluSq SINE Alu -6 307 1 2134 88 24 14 chr1 28723651 28723787 -253469877 - AluSx SINE Alu -178 134 1 1450 142 58 84 chr1 28723909 28724088 -253469576 - AluJb SINE Alu -11 301 132 1995 112 0 0 chr1 28724088 28724364 -253469300 - AluSx SINE Alu -12 300 25 1450 142 58 84 chr1 28724364 28724493 -253469171 - AluJb SINE Alu -180 132 1 625 164 0 0 chr1 28724578 28724682 -253468982 + U13 snRNA snRNA 1 104 0 2318 82 0 0 chr1 28724699 28725002 -253468662 + AluSg SINE Alu 1 303 -7 2167 104 0 10 chr1 28725335 28725642 -253468022 + AluSp SINE Alu 1 304 -9 1924 145 3 0 chr1 28725645 28725948 -253467716 + AluSx SINE Alu 1 304 -8 1716 175 129 5 chr1 28725948 28726320 -253467344 - L1MB7 LINE L1 -61 6123 5706 281 161 0 0 chr1 28726690 28726742 -253466922 - L1MB7 LINE L1 -464 5714 5663 499 319 143 43 chr1 28726825 28727186 -253466478 + MLT1L LTR MaLR 14 338 -277 2078 102 0 0 chr1 28727186 28727469 -253466195 + AluSg SINE Alu 2 284 -26 315 0 0 0 chr1 28727469 28727504 -253466160 + (CA)n Simple_repeat Simple_repeat 2 36 0 499 319 143 43 chr1 28727504 28727673 -253465991 + MLT1L LTR MaLR 337 598 -17 1370 148 31 113 chr1 28727701 28728019 -253465645 - AluJb SINE Alu -17 295 4 1712 116 45 68 chr1 28728126 28728436 -253465228 + AluSx SINE Alu 3 305 -7 2183 109 0 0 chr1 28728499 28728793 -253464871 + AluSg SINE Alu 1 294 -16 2180 86 0 3 chr1 28728835 28729125 -253464539 + AluY SINE Alu 13 301 -10 2028 120 0 0 chr1 28729286 28729610 -253464054 + AluSx SINE Alu 1 324 0 2816 126 2 26 chr1 28729670 28729791 -253463873 - MER41B LTR ERV1 0 635 513 2118 72 41 0 chr1 28729791 28730083 -253463581 + AluY SINE Alu 1 304 -7 2816 126 2 26 chr1 28730083 28730413 -253463251 - MER41B LTR ERV1 -122 513 195 816 192 53 0 chr1 28730414 28730565 -253463099 - AluJ SINE Alu -21 291 133 498 64 96 0 chr1 28730565 28730721 -253462943 + (TA)n Simple_repeat Simple_repeat 2 172 0 884 129 0 0 chr1 28730724 28730848 -253462816 - AluJ SINE Alu -188 124 1 1417 111 19 0 chr1 28730849 28731057 -253462607 - MER41B LTR ERV1 -423 212 1 5394 97 5 92 chr1 28731057 28731725 -253461939 - MER41B-int LTR ERV1 0 7756 7031 2177 71 0 0 chr1 28731725 28732044 -253461620 + AluY SINE Alu 1 319 0 2197 109 0 3 chr1 28732049 28732360 -253461304 + AluSg SINE Alu 1 310 0 5394 97 5 92 chr1 28732360 28732569 -253461095 - MER41B-int LTR ERV1 -729 7027 6801 2206 102 0 7 chr1 28732569 28732872 -253460792 - AluSp SINE Alu -11 302 2 5394 97 5 92 chr1 28732872 28733094 -253460570 - MER41B-int LTR ERV1 -955 6801 6561 2032 129 0 0 chr1 28733094 28733388 -253460276 - AluSx SINE Alu -18 294 1 2432 63 0 0 chr1 28733396 28733698 -253459966 - AluY SINE Alu -9 302 1 5394 97 5 92 chr1 28733698 28733839 -253459825 - MER41B-int LTR ERV1 -1202 6554 6402 2352 77 7 0 chr1 28733839 28734139 -253459525 - AluSx SINE Alu -10 302 1 5394 97 5 92 chr1 28734139 28734276 -253459388 - MER41B-int LTR ERV1 -1354 6402 4945 * 10654 105 32 43 chr1 28734275 28735225 -253458439 - MER41-int LTR ERV1 -4171 1775 816 1473 119 70 0 chr1 28735225 28735452 -253458212 - AluSg/x SINE Alu -4 308 66 10654 105 32 43 chr1 28735452 28735561 -253458103 - MER41-int LTR ERV1 -5130 816 707 1992 114 0 0 chr1 28735561 28735865 -253457799 + AluSg SINE Alu 2 305 0 10654 105 32 43 chr1 28735865 28736543 -253457121 - MER41-int LTR ERV1 -5239 707 283 899 105 8 30 chr1 28736543 28736676 -253456988 - FLAM_C SINE Alu -13 130 1 326 50 0 0 chr1 28736676 28736716 -253456948 - MER41-int LTR ERV1 -5666 280 241 608 215 0 0 chr1 28736716 28736823 -253456841 + FRAM SINE Alu 38 144 -32 216 0 0 0 chr1 28736823 28736847 -253456817 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2356 88 0 0 chr1 28736879 28737187 -253456477 + AluSg SINE Alu 1 308 -2 415 111 111 0 chr1 28737431 28737503 -253456161 + MER116 DNA Mariner 1 80 0 2370 80 5 80 chr1 28737694 28738080 -253455584 + L1PA14 LINE L1 5804 6160 -1 2177 117 0 0 chr1 28738195 28738503 -253455161 - AluSx SINE Alu -4 308 1 537 284 57 0 chr1 28738890 28739031 -253454633 + MIR3 SINE MIR 17 165 -43 942 209 60 60 chr1 28739039 28739252 -253454412 - L1MC4 LINE L1 -13 8029 7814 2567 42 0 3 chr1 28739252 28739564 -253454100 + AluY SINE Alu 1 311 0 942 209 60 60 chr1 28739564 28739681 -253453983 - L1MC4 LINE L1 -227 7815 7699 1382 177 26 15 chr1 28739694 28739960 -253453704 - AluJo SINE Alu -30 282 14 2200 207 123 6 chr1 28739990 28740535 -253453129 - L1MC4 LINE L1 -365 7677 7069 2179 103 0 13 chr1 28741173 28741484 -253452180 - AluSg SINE Alu -1 309 3 2156 78 3 68 chr1 28741492 28741813 -253451851 - AluSp SINE Alu -13 300 1 1502 158 10 45 chr1 28741833 28742124 -253451540 - AluJo SINE Alu -31 281 1 1986 111 3 7 chr1 28742172 28742470 -253451194 + AluY SINE Alu 2 298 -13 1430 80 5 0 chr1 28742472 28742660 -253451004 + AluSp SINE Alu 1 189 -124 1239 99 0 0 chr1 28742660 28742831 -253450833 + AluSp SINE Alu 138 308 -5 704 199 77 13 chr1 28742834 28742990 -253450674 + AluJo/FRAM SINE Alu 137 302 0 379 170 0 39 chr1 28743255 28743484 -253450180 + AluJo SINE Alu 1 302 0 2363 43 7 0 chr1 28743682 28743982 -253449682 + AluY SINE Alu 1 302 -9 2019 91 18 7 chr1 28744070 28744356 -253449308 + AluSx SINE Alu 1 289 -23 27 0 0 0 chr1 28744446 28744473 -253449191 + AT_rich Low_complexity Low_complexity 1 27 0 2336 50 0 0 chr1 28744505 28744819 -253448845 - AluY SINE Alu 0 314 1 217 231 96 0 chr1 28745298 28745350 -253448314 + MIR3 SINE MIR 115 171 -37 230 235 29 15 chr1 28746414 28746482 -253447182 + G-rich Low_complexity Low_complexity 1 69 0 215 146 0 83 chr1 28748342 28748390 -253445274 - MIR SINE MIR -29 233 190 1425 153 4 4 chr1 28748395 28748630 -253445034 + AluJb SINE Alu 60 294 -18 2190 90 7 0 chr1 28748633 28748922 -253444742 + AluSx SINE Alu 1 291 -21 410 262 40 47 chr1 28748938 28749087 -253444577 - MIR SINE MIR -74 188 41 1940 136 7 0 chr1 28749379 28749673 -253443991 + AluSx SINE Alu 1 296 -16 648 282 248 21 chr1 28750022 28750441 -253443223 + L3 LINE CR1 966 1479 -98 257 214 29 14 chr1 28750477 28750547 -253443117 + MIR SINE MIR 112 182 -80 1589 130 108 11 chr1 28750799 28751068 -253442596 + AluSq SINE Alu 1 295 -18 2343 86 0 0 chr1 28751125 28751427 -253442237 + AluSg SINE Alu 1 302 -8 753 106 0 35 chr1 28751453 28751566 -253442098 + AluSg/x SINE Alu 184 292 -17 599 214 117 41 chr1 28752020 28752216 -253441448 + MIR SINE MIR 23 233 -29 1144 140 105 143 chr1 28752909 28753130 -253440534 - AluJb SINE Alu 0 332 126 2295 53 11 0 chr1 28753130 28753411 -253440253 + AluSp SINE Alu 5 288 -25 1144 140 105 143 chr1 28753411 28753533 -253440131 - AluJb SINE Alu -206 126 1 668 188 0 0 chr1 28753578 28753690 -253439974 - FLAM_C SINE Alu -30 113 2 1966 107 0 57 chr1 28754083 28754400 -253439264 - AluSx SINE Alu -13 299 1 2259 104 0 3 chr1 28754412 28754721 -253438943 - AluSx SINE Alu -4 308 1 260 358 62 19 chr1 28755289 28755451 -253438213 - MER5A DNA MER1_type -20 169 1 863 238 119 55 chr1 28756326 28756654 -253437010 - L2 LINE L2 -4 3309 2961 1026 75 0 0 chr1 28756827 28756960 -253436704 + AluSq/x SINE Alu 1 133 -180 1748 156 7 7 chr1 28756974 28757269 -253436395 - AluSx SINE Alu -17 295 1 216 0 0 0 chr1 28757292 28757316 -253436348 + (A)n Simple_repeat Simple_repeat 1 24 0 1633 147 0 23 chr1 28757321 28757587 -253436077 + AluJb SINE Alu 1 260 -52 688 267 197 29 chr1 28757650 28757965 -253435699 - L2 LINE L2 -9 3304 2937 2084 97 23 0 chr1 28757965 28758264 -253435400 - AluSx SINE Alu -6 306 1 2128 119 0 0 chr1 28758292 28758594 -253435070 + AluSq SINE Alu 1 302 -11 1416 164 27 79 chr1 28758615 28758732 -253434932 + AluJb SINE Alu 1 122 -190 234 0 0 0 chr1 28758732 28758758 -253434906 + (TA)n Simple_repeat Simple_repeat 2 27 0 1873 138 7 3 chr1 28758758 28759062 -253434602 - AluSx SINE Alu -7 305 1 1416 164 27 79 chr1 28759062 28759272 -253434392 + AluJb SINE Alu 120 312 0 180 77 0 0 chr1 28759282 28759308 -253434356 + (GGGGA)n Simple_repeat Simple_repeat 4 29 0 322 292 30 77 chr1 28759369 28759537 -253434127 - L2 LINE L2 -475 2839 2680 * 461 326 0 21 chr1 28759526 28759667 -253433997 - MIR SINE MIR -122 140 3 * 1687 208 61 113 chr1 28759667 28759974 -253433690 + L2 LINE L2 2435 2756 -557 1587 171 4 4 chr1 28759974 28760238 -253433426 + AluJo SINE Alu 1 264 -48 1687 208 61 113 chr1 28760238 28760348 -253433316 + L2 LINE L2 2756 2870 -443 2007 110 0 17 chr1 28760348 28760660 -253433004 + AluSx SINE Alu 1 312 0 1687 208 61 113 chr1 28760660 28760947 -253432717 + L2 LINE L2 2870 3064 -249 2235 87 0 3 chr1 28760947 28761247 -253432417 + AluSc SINE Alu 1 299 -10 1687 208 61 113 chr1 28761247 28761485 -253432179 + L2 LINE L2 3064 3313 0 298 167 19 0 chr1 28764527 28764581 -253429083 + U7 snRNA snRNA 2 56 -7 257 133 67 83 chr1 28764559 28764619 -253429045 - U7 snRNA snRNA -3 60 2 * 2070 92 0 83 chr1 28764712 28765050 -253428614 - AluSx SINE Alu -2 310 1 979 155 7 0 chr1 28765069 28765224 -253428440 - AluJo/FRAM SINE Alu -23 289 134 1816 137 30 20 chr1 28765224 28765523 -253428141 - AluJb SINE Alu -8 304 3 2176 86 19 26 chr1 28765528 28765841 -253427823 - AluSx SINE Alu -1 311 1 23 0 0 0 chr1 28765844 28765867 -253427797 + AT_rich Low_complexity Low_complexity 1 23 0 1906 120 43 7 chr1 28765890 28766191 -253427473 - AluSx SINE Alu 0 312 1 322 292 72 82 chr1 28766377 28766513 -253427151 + L2 LINE L2 2614 2749 -565 1570 94 197 4 chr1 28766513 28766767 -253426897 - AluSq SINE Alu 0 303 1 322 292 72 82 chr1 28766767 28766825 -253426839 + L2 LINE L2 2749 2806 -508 590 309 34 90 chr1 28766853 28767232 -253426432 + L2 LINE L2 2911 3268 -4 1754 171 0 0 chr1 28767300 28767587 -253426077 - AluJb SINE Alu -25 287 1 288 272 181 69 chr1 28767600 28767760 -253425904 - MIR SINE MIR -46 216 40 238 286 117 99 chr1 28767953 28768166 -253425498 + LTR16A1 LTR ERVL 179 395 -62 1567 173 20 14 chr1 28768215 28768510 -253425154 + AluJb SINE Alu 1 297 -15 327 256 195 49 chr1 28768779 28768943 -253424721 + MIR SINE MIR 75 262 0 6882 61 5 28 chr1 28769442 28770514 -253423150 - SVA Other Other -599 1386 534 456 77 29 19 chr1 28770541 28771540 -253422124 - SVA Other Other -618 768 664 227 152 0 0 chr1 28771541 28771574 -253422090 + G-rich Low_complexity Low_complexity 129 161 0 653 229 117 11 chr1 28771596 28771775 -253421889 - MIR SINE MIR -60 202 5 2029 157 3 0 chr1 28771911 28772217 -253421447 + AluSx SINE Alu 3 309 -3 2440 70 0 3 chr1 28772227 28772545 -253421119 + AluSp SINE Alu 1 317 0 680 197 92 0 chr1 28772547 28772699 -253420965 + L1MA10 LINE L1 6169 6334 0 335 289 101 46 chr1 28772696 28772914 -253420750 + L1ME LINE L1 5426 5655 -511 * 805 40 0 0 chr1 28772918 28773017 -253420647 + HY3 scRNA scRNA 2 100 -1 186 43 0 0 chr1 28773020 28773043 -253420621 + (A)n Simple_repeat Simple_repeat 1 23 0 2143 134 3 3 chr1 28773044 28773350 -253420314 + AluSx SINE Alu 1 306 -6 2261 130 3 15 chr1 28773412 28773736 -253419928 + 7SLRNA srpRNA srpRNA 1 320 0 428 159 0 0 chr1 28773746 28773809 -253419855 + AluJ/FLAM SINE Alu 4 66 -246 658 185 134 13 chr1 28773826 28773983 -253419681 + MIR SINE MIR 31 206 -56 310 127 14 99 chr1 28774056 28774127 -253419537 + FLAM_A SINE Alu 68 132 -1 899 213 119 67 chr1 28774131 28774534 -253419130 + L1M4 LINE L1 4711 5134 -1012 2268 112 0 0 chr1 28774534 28774901 -253418763 + AluSg SINE Alu 1 367 0 310 289 11 22 chr1 28774901 28774991 -253418673 - MIR SINE MIR -148 114 26 2485 68 7 0 chr1 28775046 28775340 -253418324 - AluSg SINE Alu -13 297 2 2497 74 0 0 chr1 28775415 28775713 -253417951 - AluY SINE Alu -9 302 5 471 282 126 11 chr1 28775986 28776174 -253417490 + MIR SINE MIR 53 259 -3 321 311 30 7 chr1 28776217 28776352 -253417312 + MIR SINE MIR 102 239 -23 2202 136 0 0 chr1 28776514 28776815 -253416849 - AluSx SINE Alu -11 301 1 1870 191 0 0 chr1 28776827 28777136 -253416528 - AluJb SINE Alu -3 309 1 2282 109 0 0 chr1 28777169 28777471 -253416193 + AluSx SINE Alu 7 308 -4 1007 213 0 0 chr1 28777482 28777656 -253416008 + AluJb SINE Alu 138 311 -1 2120 211 112 27 chr1 28777670 28778079 -253415585 + L1ME2 LINE L1 3804 4177 -1969 2244 98 7 23 chr1 28778079 28778384 -253415280 + AluSx SINE Alu 1 300 -12 2120 211 112 27 chr1 28778384 28778443 -253415221 + L1ME2 LINE L1 4177 4230 -1916 2087 124 34 3 chr1 28778443 28778734 -253414930 + AluSx SINE Alu 1 300 -12 2120 211 112 27 chr1 28778734 28778995 -253414669 + L1ME2 LINE L1 4230 4596 -1550 2516 79 3 0 chr1 28779032 28779337 -253414327 + AluY SINE Alu 1 306 -5 423 241 27 18 chr1 28779375 28779487 -253414177 + MIR SINE MIR 1 113 -149 1644 189 43 23 chr1 28779497 28779798 -253413866 - AluJb SINE Alu -5 307 1 2173 148 0 0 chr1 28779821 28780131 -253413533 - AluSx SINE Alu -2 310 1 2163 97 3 21 chr1 28780141 28780455 -253413209 - AluSq SINE Alu 0 309 1 2987 214 48 35 chr1 28780470 28780634 -253413030 + L1ME2 LINE L1 5320 5480 -684 2364 106 0 0 chr1 28780634 28780927 -253412737 + AluSg SINE Alu 1 293 -17 2158 108 3 10 chr1 28780932 28781229 -253412435 + AluSq SINE Alu 6 300 -13 2987 214 48 35 chr1 28781229 28781335 -253412329 + L1ME2 LINE L1 5483 5586 -578 1829 148 28 3 chr1 28781335 28781626 -253412038 - AluJb SINE Alu -14 298 1 2987 214 48 35 chr1 28781626 28782179 -253411485 + L1ME2 LINE L1 5586 6161 -3 2140 111 40 0 chr1 28782179 28782477 -253411187 - AluSp SINE Alu -3 310 1 241 242 33 66 chr1 28782821 28782912 -253410752 + MIR SINE MIR 38 125 -83 1821 142 0 57 chr1 28782982 28783313 -253410351 - AluJb SINE Alu 0 312 1 319 254 37 90 chr1 28783672 28783806 -253409858 - MIR3 SINE MIR -46 162 36 1634 174 0 75 chr1 28784230 28784551 -253409113 + AluJb SINE Alu 1 297 -15 269 217 84 12 chr1 28784556 28784639 -253409025 - MIR SINE MIR -127 135 47 2205 102 11 0 chr1 28784797 28785104 -253408560 - AluSq SINE Alu 0 310 1 2022 134 3 38 chr1 28785105 28785418 -253408246 - AluSx SINE Alu -10 302 1 316 284 29 20 chr1 28785469 28785571 -253408093 - MIR SINE MIR -147 115 13 484 271 206 0 chr1 28785844 28786043 -253407621 + L3 LINE CR1 1334 1573 -4 445 245 45 60 chr1 28786071 28786218 -253407446 + MIR SINE MIR 5 144 -97 2431 99 0 0 chr1 28786218 28786521 -253407143 + AluSg SINE Alu 1 303 -7 445 245 45 60 chr1 28786521 28786554 -253407110 + MIR SINE MIR 144 176 -65 379 301 166 5 chr1 28787227 28787420 -253406244 + MIR SINE MIR 6 229 -33 711 176 171 27 chr1 28787528 28787715 -253405949 + AluJo SINE Alu 83 296 -16 364 101 14 0 chr1 28787814 28787880 -253405784 - LTR23 LTR ERV1 -57 388 314 725 150 0 64 chr1 28787881 28788021 -253405643 - FLAM_C SINE Alu -2 131 1 391 281 26 9 chr1 28788180 28788294 -253405370 - MIR SINE MIR -46 216 101 370 307 95 58 chr1 28788508 28788782 -253404882 - L2 LINE L2 0 3272 2989 587 244 144 0 chr1 28789683 28789843 -253403821 - MER5A DNA MER1_type 0 189 7 466 242 16 0 chr1 28789845 28789969 -253403695 + L2 LINE L2 2192 2317 -997 2460 90 0 0 chr1 28789970 28790280 -253403384 - AluY SINE Alu 0 311 2 1135 65 0 14 chr1 28790281 28790419 -253403245 - AluSp SINE Alu -177 136 1 1219 276 144 38 chr1 28790419 28790767 -253402897 + L2 LINE L2 2310 2620 -693 2000 111 35 14 chr1 28790767 28791055 -253402609 - AluSx SINE Alu -18 294 1 1219 276 144 38 chr1 28791055 28791591 -253402073 + L2 LINE L2 2620 3310 -3 454 209 86 29 chr1 28791604 28791743 -253401921 + MIR SINE MIR 114 260 -2 2387 111 0 0 chr1 28792995 28793302 -253400362 - AluSg SINE Alu -3 307 1 445 259 41 14 chr1 28794008 28794155 -253399509 + MIR SINE MIR 32 182 -80 184 240 66 153 chr1 28794233 28794416 -253399248 + L2 LINE L2 3017 3183 -89 494 246 84 0 chr1 28795686 28795828 -253397836 + L2 LINE L2 2306 2459 -855 2390 89 0 0 chr1 28795828 28796120 -253397544 - AluSx SINE Alu -20 292 1 674 220 148 0 chr1 28796149 28796331 -253397333 + L2 LINE L2 3105 3313 0 249 256 51 13 chr1 28796338 28796416 -253397248 + MIR3 SINE MIR 77 157 -51 1740 157 18 14 chr1 28796458 28796758 -253396906 - AluJo SINE Alu 0 301 1 401 270 110 10 chr1 28796783 28796983 -253396681 + L2 LINE L2 2204 2423 -891 289 222 100 67 chr1 28797155 28797245 -253396419 + L2 LINE L2 3179 3271 -1 293 270 40 60 chr1 28797722 28797772 -253395892 - MIR SINE MIR -62 146 97 1732 154 95 0 chr1 28797772 28798045 -253395619 - AluSx SINE Alu -13 299 1 293 270 40 60 chr1 28798045 28798125 -253395539 - MIR SINE MIR -111 97 20 2308 107 0 13 chr1 28798182 28798492 -253395172 - AluSq SINE Alu -7 306 1 192 156 0 0 chr1 28798616 28798648 -253395016 + MER5A DNA MER1_type 135 166 -23 258 274 197 0 chr1 28798720 28798837 -253394827 - MER102b DNA MER1_type -29 312 173 559 285 35 25 chr1 28798996 28799196 -253394468 + MIR SINE MIR 35 236 -26 2316 119 0 0 chr1 28799280 28799590 -253394074 + AluSg SINE Alu 1 310 0 1901 134 7 39 chr1 28799632 28799937 -253393727 + AluJb SINE Alu 1 295 -17 181 250 42 0 chr1 28799937 28799985 -253393679 + MIR SINE MIR 190 239 -23 2453 217 134 31 chr1 28800236 28800374 -253393290 + L1ME3A LINE L1 5298 5420 -750 2505 81 0 10 chr1 28800374 28800683 -253392981 + AluSx SINE Alu 1 306 -6 2453 217 134 31 chr1 28800683 28801120 -253392544 + L1ME3A LINE L1 5420 5979 -191 2123 94 0 4 chr1 28801120 28801432 -253392232 + AluSq SINE Alu 20 330 0 2453 217 134 31 chr1 28801432 28801638 -253392026 + L1ME3A LINE L1 5979 6162 -8 337 250 164 23 chr1 28801882 28802010 -253391654 - L3 LINE CR1 -72 1505 1360 2386 91 0 0 chr1 28802411 28802709 -253390955 + AluY SINE Alu 1 298 -13 31 0 0 0 chr1 28802709 28802740 -253390924 + AT_rich Low_complexity Low_complexity 1 31 0 2195 152 0 0 chr1 28802818 28803128 -253390536 - AluSx SINE Alu -2 310 1 290 259 44 30 chr1 28803167 28803302 -253390362 + L1MC5 LINE L1 7310 7446 -515 394 215 97 0 chr1 28803339 28803432 -253390232 + L1ME2 LINE L1 6063 6164 0 1976 155 3 3 chr1 28803442 28803732 -253389932 + AluJb SINE Alu 1 290 -22 2218 71 0 8 chr1 28803830 28804097 -253389567 + AluSq SINE Alu 1 265 -48 985 212 30 26 chr1 28805155 28805424 -253388240 + L1 LINE L1 4965 5234 -912 500 133 42 17 chr1 28805535 28805655 -253388009 + AluSc SINE Alu 184 306 -3 425 311 17 0 chr1 28806136 28806255 -253387409 + MIR SINE MIR 80 200 -62 2076 123 3 3 chr1 28806270 28806562 -253387102 - AluSq SINE Alu -21 292 1 190 263 0 0 chr1 28806586 28806624 -253387040 + L2 LINE L2 3255 3292 -21 278 100 0 0 chr1 28807183 28807223 -253386441 + Alu SINE Alu 7 46 -254 21 0 0 0 chr1 28807255 28807276 -253386388 + AT_rich Low_complexity Low_complexity 1 21 0 241 287 0 29 chr1 28808227 28808363 -253385301 + (CGGGG)n Simple_repeat Simple_repeat 4 135 0 1793 124 34 34 chr1 28809151 28809442 -253384222 + AluSx SINE Alu 18 308 -4 1385 154 77 18 chr1 28809452 28809724 -253383940 + AluJo SINE Alu 2 289 -23 2327 99 7 0 chr1 28810145 28810449 -253383215 - AluSp SINE Alu -7 306 1 2352 121 0 0 chr1 28810589 28810895 -253382769 - AluSx SINE Alu -6 306 1 631 225 0 0 chr1 28810904 28811033 -253382631 - FLAM_A SINE Alu -1 141 13 21 0 0 0 chr1 28811041 28811062 -253382602 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 28811154 28811184 -253382480 + AT_rich Low_complexity Low_complexity 1 30 0 1824 118 4 0 chr1 28811233 28811478 -253382186 + AluSg SINE Alu 1 246 -64 21 36 0 0 chr1 28811915 28811943 -253381721 + GC_rich Low_complexity Low_complexity 1 28 0 347 250 107 9 chr1 28814180 28814292 -253379372 - MIR SINE MIR -20 242 120 182 133 0 0 chr1 28814961 28814991 -253378673 - MIR SINE MIR -61 147 118 2211 84 0 58 chr1 28815001 28815310 -253378354 - AluSc SINE Alu -18 291 1 1799 128 25 4 chr1 28815338 28815619 -253378045 + AluSx SINE Alu 1 287 -25 714 179 0 0 chr1 28816059 28816182 -253377482 - FRAM SINE Alu -30 146 24 1182 234 89 3 chr1 28816184 28816466 -253377198 + MER97b DNA MER1_type? 230 535 -518 317 210 121 9 chr1 28816446 28816467 -253377197 + MER97a DNA MER1_type? 781 798 -96 * 2495 90 0 0 chr1 28816467 28816777 -253376887 + AluY SINE Alu 1 310 -1 317 210 121 9 chr1 28816777 28816903 -253376761 + MER97a DNA MER1_type? 798 891 -3 1307 159 56 21 chr1 28816968 28817129 -253376535 - AluJo SINE Alu -8 304 131 2269 94 0 23 chr1 28817129 28817428 -253376236 - AluSg SINE Alu -18 292 1 1307 159 56 21 chr1 28817428 28817499 -253376165 - AluJo SINE Alu -181 131 64 1924 150 20 0 chr1 28817502 28817796 -253375868 - AluJb SINE Alu -12 300 1 390 252 17 34 chr1 28817799 28817918 -253375746 + MER96B DNA MER1_type? 301 417 0 479 213 0 90 chr1 28817918 28817997 -253375667 - MIR SINE MIR -70 192 126 2270 93 3 17 chr1 28817997 28818299 -253375365 + AluSc SINE Alu 1 298 -11 479 213 0 90 chr1 28818299 28818341 -253375323 - MIR SINE MIR -136 126 82 949 122 15 0 chr1 28818347 28818478 -253375186 - AluSq/x SINE Alu -179 133 1 2418 93 3 0 chr1 28818492 28818792 -253374872 - AluSp SINE Alu -12 301 1 3300 98 14 8 chr1 28818792 28819282 -253374382 - Tigger1 DNA MER2_type -939 1479 987 378 42 0 0 chr1 28819282 28819330 -253374334 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 399 21 0 0 chr1 28819329 28819377 -253374287 + (GA)n Simple_repeat Simple_repeat 1 48 0 242 161 18 89 chr1 28819558 28819670 -253373994 + C-rich Low_complexity Low_complexity 5 108 0 330 227 72 82 chr1 28820071 28820168 -253373496 + L1MC4 LINE L1 6605 6700 -1342 782 120 0 0 chr1 28820181 28820298 -253373366 - FLAM_C SINE Alu -16 117 1 313 269 43 0 chr1 28820720 28820813 -253372851 - MIR SINE MIR -58 150 54 2207 62 22 4 chr1 28820825 28821098 -253372566 + AluY SINE Alu 17 294 -17 434 285 54 8 chr1 28821187 28821317 -253372347 + MIR SINE MIR 18 153 -109 1628 143 57 57 chr1 28821378 28821541 -253372123 - AluJo SINE Alu -12 300 135 2175 134 0 3 chr1 28821541 28821839 -253371825 - AluSc SINE Alu -12 297 1 1628 143 57 57 chr1 28821839 28821975 -253371689 - AluJo SINE Alu -176 136 1 1559 92 3 176 chr1 28822036 28822217 -253371447 - AluSc SINE Alu 0 299 215 2759 10 7 0 chr1 28822217 28822512 -253371152 - AluY SINE Alu -14 297 1 1559 92 3 176 chr1 28822512 28822696 -253370968 - AluSc SINE Alu -84 215 1 886 137 8 0 chr1 28822698 28822829 -253370835 - FAM SINE Alu -9 40 1 200 250 67 33 chr1 28822839 28822899 -253370765 - L2 LINE L2 -37 3276 3215 857 200 0 0 chr1 28822908 28823053 -253370611 + FRAM SINE Alu 21 165 -11 187 261 34 57 chr1 28823054 28823142 -253370522 - L2 LINE L2 -79 3234 3149 * 607 214 18 127 chr1 28823117 28823314 -253370350 - MIR SINE MIR 0 262 92 2166 88 3 72 chr1 28823314 28823634 -253370030 + AluSq SINE Alu 1 298 -15 607 214 18 127 chr1 28823634 28823665 -253369999 - MIR SINE MIR -170 92 59 254 207 41 58 chr1 28823840 28823961 -253369703 - L1MC/D LINE L1 -1898 5910 5792 326 222 42 0 chr1 28824064 28824136 -253369528 + MIR SINE MIR 80 154 -108 2066 86 10 51 chr1 28824148 28824465 -253369199 + AluY SINE Alu 2 306 0 192 208 94 0 chr1 28824587 28824640 -253369024 - L2 LINE L2 0 3272 3215 301 266 11 43 chr1 28825346 28825426 -253368238 + L3 LINE CR1 869 947 -630 2305 126 0 0 chr1 28825426 28825736 -253367928 + AluSx SINE Alu 2 311 -1 301 266 11 43 chr1 28825736 28825749 -253367915 + L3 LINE CR1 947 959 -618 225 337 0 47 chr1 28826014 28826100 -253367564 - L2 LINE L2 -60 3253 3172 334 332 215 0 chr1 28826143 28826357 -253367307 + L3 LINE CR1 1248 1507 -70 694 259 56 5 chr1 28826393 28826590 -253367074 - MIR SINE MIR -54 208 2 520 338 91 5 chr1 28827223 28827421 -253366243 - MIR SINE MIR -1 261 47 301 208 150 25 chr1 28827699 28827819 -253365845 - MIR SINE MIR -39 223 89 2265 102 0 0 chr1 28827827 28828121 -253365543 - AluSq SINE Alu -3 310 17 233 316 13 25 chr1 28828202 28828281 -253365383 - Charlie4 DNA MER1_type 0 1961 1884 2460 80 3 0 chr1 28828347 28828649 -253365015 - AluSp SINE Alu -10 303 1 545 326 53 5 chr1 28829229 28829419 -253364245 - MIR SINE MIR -56 206 8 221 227 0 0 chr1 28829506 28829550 -253364114 + L2 LINE L2 3225 3268 -4 428 263 64 45 chr1 28830288 28830444 -253363220 + MIR SINE MIR 32 190 -72 2368 84 7 13 chr1 28830454 28830762 -253362902 + AluSx SINE Alu 1 306 -6 220 370 34 34 chr1 28830848 28830994 -253362670 - L2 LINE L2 -93 3179 3034 298 346 63 8 chr1 28831050 28831177 -253362487 - MIR SINE MIR -70 192 59 232 229 49 16 chr1 28831198 28831259 -253362405 - L2 LINE L2 -229 3043 2981 293 295 4 24 chr1 28831681 28831786 -253361878 - MIR3 SINE MIR -40 168 86 325 277 30 0 chr1 28832163 28832264 -253361400 + MIR SINE MIR 79 182 -80 324 298 118 13 chr1 28832301 28832474 -253361190 + MIR SINE MIR 10 198 -62 370 266 133 0 chr1 28833146 28833259 -253360405 - MIR SINE MIR -21 241 114 362 320 45 36 chr1 28833989 28834236 -253359428 + MIR SINE MIR 14 262 0 386 246 18 35 chr1 28834797 28834911 -253358753 - MIR3 SINE MIR -27 181 70 315 319 24 30 chr1 28834944 28835113 -253358551 + L2 LINE L2 2924 3091 -181 969 160 0 18 chr1 28835152 28835321 -253358343 - AluJo/FRAM SINE Alu 0 302 137 1268 128 25 91 chr1 28835321 28835380 -253358284 + AluJo SINE Alu 72 133 -179 2447 76 3 0 chr1 28835380 28835671 -253357993 - AluSp SINE Alu -21 292 1 1268 128 25 91 chr1 28835671 28835854 -253357810 + AluJo SINE Alu 133 298 -14 2096 123 3 3 chr1 28835855 28836148 -253357516 + AluSx SINE Alu 2 294 -18 1986 116 14 14 chr1 28836829 28836942 -253356722 + AluSx SINE Alu 24 136 -176 2483 76 3 0 chr1 28836942 28837243 -253356421 + AluSq SINE Alu 1 302 -11 1986 116 14 14 chr1 28837243 28837414 -253356250 + AluSx SINE Alu 135 308 -4 354 111 0 0 chr1 28837415 28837469 -253356195 - Tigger1 DNA MER2_type -1493 925 872 1989 147 3 10 chr1 28837469 28837762 -253355902 - AluSx SINE Alu -21 291 1 931 144 14 0 chr1 28837762 28837901 -253355763 - AluJo SINE Alu -171 141 1 3266 113 66 92 chr1 28837901 28838277 -253355387 - Tigger1 DNA MER2_type -1765 653 268 2271 92 0 3 chr1 28838277 28838559 -253355105 - AluSg SINE Alu -29 281 1 3266 113 66 92 chr1 28838559 28838808 -253354856 - Tigger1 DNA MER2_type -2150 268 45 1562 201 7 14 chr1 28838808 28838940 -253354724 + AluJo SINE Alu 5 136 -176 2161 119 7 13 chr1 28838940 28839275 -253354389 + AluSp SINE Alu 1 313 0 1562 201 7 14 chr1 28839275 28839431 -253354233 + AluJo SINE Alu 136 291 -21 3266 113 66 92 chr1 28839431 28839474 -253354190 - Tigger1 DNA MER2_type -2373 45 2 27 62 0 0 chr1 28839532 28839580 -253354084 + AT_rich Low_complexity Low_complexity 1 48 0 2945 16 0 0 chr1 28839588 28839901 -253353763 + AluYb8 SINE Alu 1 313 -5 430 250 97 61 chr1 28839907 28840103 -253353561 + MER102a DNA MER1_type 127 329 -1 2568 61 0 0 chr1 28840225 28840522 -253353142 - AluY SINE Alu -14 297 1 2119 91 60 14 chr1 28840525 28840673 -253352991 - AluSx SINE Alu -14 298 158 2648 47 0 10 chr1 28840673 28840974 -253352690 - AluY SINE Alu -13 298 1 2119 91 60 14 chr1 28840974 28841110 -253352554 - AluSx SINE Alu -154 158 1 324 328 45 7 chr1 28841184 28841397 -253352267 - MIR SINE MIR -5 257 39 285 176 129 35 chr1 28841731 28841816 -253351848 - MIR SINE MIR -98 164 72 338 255 92 13 chr1 28841922 28842075 -253351589 + L1MC5 LINE L1 7037 7201 -760 1802 126 73 40 chr1 28842252 28842395 -253351269 + AluJb SINE Alu 1 138 -174 2354 93 0 0 chr1 28842395 28842684 -253350980 + AluSg SINE Alu 1 289 -21 1802 126 73 40 chr1 28842684 28842841 -253350823 + AluJb SINE Alu 138 311 -1 327 272 0 0 chr1 28842857 28842938 -253350726 + L1MC5 LINE L1 7313 7393 -568 2074 118 36 0 chr1 28842944 28843224 -253350440 + AluSx SINE Alu 3 292 -20 2365 88 0 10 chr1 28843306 28843603 -253350061 + AluSg SINE Alu 1 294 -16 589 223 37 32 chr1 28843604 28843792 -253349872 + L1MC5 LINE L1 7388 7576 -385 1961 116 0 4 chr1 28843813 28844080 -253349584 + AluSg SINE Alu 1 266 -44 1325 170 147 8 chr1 28844231 28844496 -253349168 - AluJb SINE Alu 0 302 1 619 246 69 15 chr1 28844932 28845135 -253348529 - L2 LINE L2 -1 3312 3099 423 291 262 12 chr1 28845145 28845488 -253348176 - L2 LINE L2 -370 2944 2516 397 323 77 62 chr1 28845489 28845683 -253347981 + L1MC4a LINE L1 6223 6423 -1385 2511 74 3 0 chr1 28845683 28845981 -253347683 - AluSp SINE Alu -14 299 1 397 323 77 62 chr1 28845981 28846046 -253347618 + L1MC4a LINE L1 6423 6486 -1322 2371 93 23 0 chr1 28846168 28846470 -253347194 - AluSx SINE Alu -3 309 1 230 288 11 109 chr1 28846471 28846655 -253347009 - MIR SINE MIR -1 261 96 198 103 0 0 chr1 28847523 28847552 -253346112 + (TATG)n Simple_repeat Simple_repeat 4 32 0 465 137 0 0 chr1 28847553 28847626 -253346038 - FLAM_A SINE Alu -27 115 43 650 254 26 48 chr1 28847646 28847874 -253345790 + MIR SINE MIR 40 262 0 208 276 61 41 chr1 28848204 28848302 -253345362 + L3b LINE CR1 1294 1393 -190 313 204 80 0 chr1 28848999 28849087 -253344577 - MIR SINE MIR -61 201 107 200 281 35 0 chr1 28849739 28849796 -253343868 + MIR SINE MIR 154 212 -50 467 273 102 32 chr1 28850622 28850809 -253342855 - MIR SINE MIR -29 233 34 739 168 22 0 chr1 28852488 28852625 -253341039 - FLAM_C SINE Alu -3 140 1 284 283 150 17 chr1 28855339 28855459 -253338205 + MIR3 SINE MIR 10 145 -63 189 289 105 0 chr1 28855586 28855662 -253338002 + MIR SINE MIR 35 118 -90 226 184 0 0 chr1 28855733 28855771 -253337893 - MIR SINE MIR -21 241 204 1593 143 121 18 chr1 28855900 28856180 -253337484 - AluSg1 SINE Alu 0 309 1 553 209 20 85 chr1 28856188 28856325 -253337339 - MIR SINE MIR -55 207 86 2037 123 3 43 chr1 28856325 28856625 -253337039 + AluSx SINE Alu 15 302 -10 553 209 20 85 chr1 28856625 28856688 -253336976 - MIR SINE MIR -176 86 20 265 257 274 11 chr1 28857614 28857793 -253335871 + L2 LINE L2 2828 3053 -219 1965 82 0 0 chr1 28857916 28858148 -253335516 + AluSx SINE Alu 56 287 -25 570 114 0 0 chr1 28858148 28858236 -253335428 + (GGGGA)n Simple_repeat Simple_repeat 4 91 0 218 310 0 13 chr1 28859545 28859641 -253334023 - MIR SINE MIR -87 121 50 374 275 144 18 chr1 28859801 28859968 -253333696 - MIR SINE MIR -6 256 69 258 180 0 0 chr1 28859969 28860019 -253333645 - L2 LINE L2 -2 3311 3262 221 250 0 3 chr1 28860030 28860092 -253333572 - MIR SINE MIR -138 70 10 237 227 106 0 chr1 28861146 28861212 -253332452 - MIR3 SINE MIR -24 184 112 358 323 69 8 chr1 28861489 28861619 -253332045 - MIR SINE MIR -112 150 13 468 273 24 67 chr1 28861957 28862122 -253331542 - MIR SINE MIR -76 186 29 907 261 174 9 chr1 28862753 28863190 -253330474 + L1MC4a LINE L1 5669 6177 -1631 2362 81 0 31 chr1 28863197 28863520 -253330144 + AluSq SINE Alu 1 313 0 2385 93 3 0 chr1 28863578 28863879 -253329785 - AluSc SINE Alu -7 302 1 29 0 0 0 chr1 28865103 28865132 -253328532 + AT_rich Low_complexity Low_complexity 1 29 0 268 331 59 7 chr1 28865163 28865299 -253328365 + L2 LINE L2 3003 3145 -127 1558 94 12 94 chr1 28865368 28865505 -253328159 + AluSx SINE Alu 1 148 -164 2391 80 3 7 chr1 28865505 28865806 -253327858 + AluSc SINE Alu 1 300 -9 2260 108 3 3 chr1 28865808 28866105 -253327559 + AluSp SINE Alu 1 297 -16 1558 94 12 94 chr1 28866105 28866218 -253327446 + AluSx SINE Alu 149 233 -79 1972 136 17 11 chr1 28866572 28866859 -253326805 - AluSx SINE Alu -19 293 5 2148 138 3 10 chr1 28867325 28867636 -253326028 - AluSx SINE Alu -3 309 1 1230 102 24 12 chr1 28868097 28868264 -253325400 - AluSx SINE Alu -143 169 1 2246 90 3 27 chr1 28870688 28870988 -253322676 + AluY SINE Alu 17 309 -2 2429 79 0 0 chr1 28871374 28871665 -253321999 + AluY SINE Alu 1 291 -20 261 253 91 0 chr1 28872284 28872383 -253321281 - MIR SINE MIR -109 153 46 884 120 0 0 chr1 28873949 28874066 -253319598 - AluJb SINE Alu -179 133 17 292 167 42 14 chr1 28874080 28874152 -253319512 - MER97c DNA MER1_type? -993 97 24 2435 78 0 3 chr1 28874240 28874536 -253319128 - AluSg SINE Alu -15 295 1 1997 127 52 14 chr1 28874537 28874828 -253318836 - AluSx SINE Alu -10 302 1 293 279 66 44 chr1 28874892 28875028 -253318636 + MIR SINE MIR 53 191 -71 1795 176 33 0 chr1 28875455 28875793 -253317871 - AluJo SINE Alu 0 348 1 663 217 7 14 chr1 28875828 28875971 -253317693 - MLT1B LTR MaLR -43 347 206 907 205 60 0 chr1 28876044 28876244 -253317420 - MLT1A1 LTR MaLR 0 365 154 494 119 239 9 chr1 28876248 28876357 -253317307 - FLAM_C SINE Alu -1 142 9 1162 92 0 0 chr1 28876381 28876545 -253317119 - L1PA7 LINE L1 -2 6152 5989 1736 135 56 0 chr1 28876546 28876850 -253316814 - MER58B DNA MER1_type -10 331 11 456 182 68 0 chr1 28876865 28876953 -253316711 + L2 LINE L2 3209 3302 -11 189 0 0 0 chr1 28877224 28877245 -253316419 + (T)n Simple_repeat Simple_repeat 1 21 0 801 136 0 8 chr1 28878432 28878550 -253315114 + AluJb SINE Alu 1 117 -195 497 79 26 13 chr1 28878550 28878626 -253315038 - AluSc SINE Alu -144 165 89 2653 68 0 0 chr1 28878828 28879138 -253314526 - AluY SINE Alu -1 310 1 468 310 137 15 chr1 28879143 28879340 -253314324 - MIR SINE MIR -8 254 34 * 1057 269 92 14 chr1 28879336 28879533 -253314131 - L2 LINE L2 -5 3308 3128 2272 97 7 7 chr1 28879533 28879833 -253313831 - AluSx SINE Alu -12 300 1 1057 269 92 14 chr1 28879833 28880181 -253313483 - L2 LINE L2 -185 3128 2720 654 298 25 25 chr1 28880309 28880554 -253313110 + MIR SINE MIR 3 247 -15 1951 159 3 0 chr1 28880574 28880870 -253312794 - AluJo SINE Alu -11 301 5 2529 77 3 0 chr1 28881101 28881411 -253312253 + AluY SINE Alu 1 311 0 1193 139 9 79 chr1 28881586 28881802 -253311862 + AluJb SINE Alu 101 301 -11 220 314 114 38 chr1 28881825 28881930 -253311734 + MIR SINE MIR 3 115 -147 * 396 291 186 51 chr1 28881910 28882040 -253311624 - L2 LINE L2 -2 3270 3159 2348 81 10 7 chr1 28882040 28882336 -253311328 + AluSp SINE Alu 1 297 -16 396 291 186 51 chr1 28882336 28882588 -253311076 - L2 LINE L2 -113 3159 2854 355 187 66 0 chr1 28883106 28883197 -253310467 + MER53 DNA DNA 4 100 -89 978 105 0 92 chr1 28883392 28883620 -253310044 + AluSq SINE Alu 14 220 -93 197 282 105 57 chr1 28885803 28885927 -253307737 - MIR3 SINE MIR -12 196 67 250 238 107 48 chr1 28887693 28887777 -253305887 - MIR SINE MIR -124 138 50 235 180 0 40 chr1 28888552 28888602 -253305062 - MLT1L LTR MaLR -153 462 415 403 273 76 0 chr1 28888704 28888836 -253304828 - MLT1L LTR MaLR -337 278 137 1124 28 28 0 chr1 28889013 28889157 -253304507 + L1PA4 LINE L1 6005 6152 -3 481 161 32 11 chr1 28889214 28889307 -253304357 - FLAM_C SINE Alu -18 125 31 419 202 11 0 chr1 28889322 28889411 -253304253 - L1MB7 LINE L1 -43 6141 6052 301 246 0 0 chr1 28889431 28889488 -253304176 + L1MC4 LINE L1 6640 6696 -1346 1989 170 65 28 chr1 28889490 28889539 -253304125 - L1MB8 LINE L1 -121 6057 6011 1795 142 26 42 chr1 28889539 28889849 -253303815 - AluJb SINE Alu -7 305 1 1989 170 65 28 chr1 28889849 28890285 -253303379 - L1MB8 LINE L1 -167 6011 5608 2328 107 3 3 chr1 28890289 28890598 -253303066 - AluSp SINE Alu -4 309 1 2085 117 28 3 chr1 28890598 28890888 -253302776 - AluSq SINE Alu -16 297 1 2211 100 0 20 chr1 28890891 28891190 -253302474 - AluSg SINE Alu -2 308 16 2388 78 13 10 chr1 28891209 28891517 -253302147 - AluSx SINE Alu -3 309 1 238 230 14 14 chr1 28891517 28891591 -253302073 - L1MB8 LINE L1 -808 5366 5293 2172 110 0 10 chr1 28891664 28891963 -253301701 - AluSx SINE Alu -6 306 11 2106 139 7 3 chr1 28891963 28892272 -253301392 - AluSx SINE Alu -2 310 1 687 195 101 13 chr1 28892312 28892471 -253301193 - AluJb SINE Alu -11 301 129 1924 139 0 24 chr1 28892484 28892639 -253301025 - AluSx SINE Alu -25 287 130 2129 93 25 4 chr1 28892639 28892918 -253300746 - AluSx SINE Alu -22 290 6 2206 107 3 3 chr1 28892918 28893209 -253300455 - AluSq SINE Alu -22 291 1 1924 139 0 24 chr1 28893209 28893346 -253300318 - AluSx SINE Alu -180 132 1 1027 199 84 28 chr1 28893347 28893414 -253300250 - L1MB8 LINE L1 -866 5280 5218 1532 186 36 7 chr1 28893414 28893710 -253299954 - AluJb SINE Alu 0 304 1 1027 199 84 28 chr1 28893710 28893962 -253299702 - L1MB8 LINE L1 -928 5218 4942 350 305 75 54 chr1 28894079 28894247 -253299417 + L2 LINE L2 2233 2411 -903 3784 102 20 9 chr1 28894247 28894368 -253299296 - MER41A LTR ERV1 0 554 436 2054 146 10 3 chr1 28894368 28894677 -253298987 + AluSx SINE Alu 1 311 -1 3784 102 20 9 chr1 28894677 28895103 -253298561 - MER41A LTR ERV1 -118 436 1 350 305 75 54 chr1 28895103 28895229 -253298435 + L2 LINE L2 2411 2533 -781 333 263 44 18 chr1 28895234 28895348 -253298316 - L1MC5 LINE L1 -32 7929 7813 2304 71 0 11 chr1 28895444 28895725 -253297939 + AluY SINE Alu 2 279 -32 346 197 0 0 chr1 28895725 28895786 -253297878 - AluJ/FLAM SINE Alu -241 61 1 789 330 162 8 chr1 28895786 28896398 -253297266 + L2 LINE L2 953 1658 -1656 240 158 18 18 chr1 28896445 28896502 -253297162 - AluSp/q SINE Alu 0 303 247 218 236 56 0 chr1 28896517 28896589 -253297075 + T-rich Low_complexity Low_complexity 2 77 0 2542 48 0 3 chr1 28896902 28897192 -253296472 - AluY SINE Alu -22 289 1 668 178 17 106 chr1 28897211 28897330 -253296334 - L1PB4 LINE L1 -18 6138 6039 2390 101 3 0 chr1 28897330 28897638 -253296026 - AluSp SINE Alu 0 313 5 668 178 17 106 chr1 28897638 28897698 -253295966 - L1PB4 LINE L1 -117 6039 5975 418 232 62 0 chr1 28897793 28897905 -253295759 + MER5A DNA MER1_type 26 144 -45 2263 92 6 47 chr1 28897913 28898230 -253295434 + AluSg SINE Alu 1 304 -6 2096 151 0 0 chr1 28898240 28898538 -253295126 + AluJb SINE Alu 1 298 -14 481 218 159 22 chr1 28898599 28898806 -253294858 + MLT1L LTR MaLR 197 458 -97 2059 174 52 48 chr1 28898844 28899149 -253294515 + Tigger7 DNA MER2_type 1 310 -423 2475 76 0 0 chr1 28899149 28899451 -253294213 + AluY SINE Alu 1 302 -9 2059 174 52 48 chr1 28899451 28899583 -253294081 + Tigger7 DNA MER2_type 310 440 -293 2029 120 31 10 chr1 28899584 28899875 -253293789 + AluSg SINE Alu 1 297 -13 298 33 83 0 chr1 28899875 28899935 -253293729 + (TA)n Simple_repeat Simple_repeat 1 65 0 265 198 66 91 chr1 28899941 28900048 -253293616 + Charlie5 DNA MER1_type 2433 2534 -90 2495 82 3 0 chr1 28900048 28900353 -253293311 - AluSp SINE Alu -7 306 1 265 198 66 91 chr1 28900353 28900442 -253293222 + Charlie5 DNA MER1_type 2534 2624 0 463 175 103 10 chr1 28900473 28900570 -253293094 - L2 LINE L2 -16 3297 3192 193 220 17 34 chr1 28900568 28900627 -253293037 - MIR SINE MIR -67 195 138 * 1587 164 51 18 chr1 28900649 28900924 -253292740 - AluJo SINE Alu -28 284 1 32 0 0 0 chr1 28900926 28900958 -253292706 + AT_rich Low_complexity Low_complexity 1 32 0 825 142 0 8 chr1 28900974 28901108 -253292556 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr1 28901108 28901144 -253292520 + AT_rich Low_complexity Low_complexity 1 36 0 1218 132 82 0 chr1 28901151 28901333 -253292331 - AluJo SINE Alu -30 282 86 531 331 7 0 chr1 28901334 28901476 -253292188 - MIR SINE MIR -110 152 10 381 290 45 19 chr1 28901992 28902147 -253291517 - MIR SINE MIR -80 182 24 2080 122 0 31 chr1 28902322 28902633 -253291031 - AluSx SINE Alu 0 306 5 2130 110 0 0 chr1 28902646 28902919 -253290745 - AluSx SINE Alu -26 286 14 512 252 31 16 chr1 28903061 28903188 -253290476 + MIR SINE MIR 16 144 -64 565 233 16 8 chr1 28903506 28903635 -253290029 - L2 LINE L2 -1 3312 3183 2348 100 3 0 chr1 28903692 28903991 -253289673 + AluSp SINE Alu 1 300 -13 212 300 0 0 chr1 28904268 28904328 -253289336 + L2 LINE L2 2449 2508 -806 * 366 286 8 42 chr1 28904313 28904432 -253289232 - L2 LINE L2 -5 3267 3153 249 291 92 0 chr1 28904439 28904580 -253289084 + L2 LINE L2 2537 2690 -624 390 112 7 17 chr1 28904591 28904673 -253288991 - Alu SINE Alu -1 301 243 1854 254 104 14 chr1 28904799 28905422 -253288242 + HAL1 LINE L1 19 697 -1810 308 158 0 0 chr1 28905425 28905482 -253288182 + HAL1 LINE L1 971 1027 -1480 1245 155 0 0 chr1 28905482 28905669 -253287995 - AluSg/x SINE Alu -5 305 119 2275 89 7 0 chr1 28905729 28906032 -253287632 + AluSg SINE Alu 1 305 0 590 246 24 0 chr1 28906075 28906242 -253287422 + HAL1 LINE L1 1093 1263 -1244 1554 158 15 11 chr1 28906255 28906528 -253287136 + AluJb SINE Alu 1 274 -38 1804 156 3 30 chr1 28906560 28906699 -253286965 + AluJb SINE Alu 1 142 -170 2487 80 0 13 chr1 28906699 28907013 -253286651 + AluY SINE Alu 2 311 0 1804 156 3 30 chr1 28907013 28907175 -253286489 + AluJb SINE Alu 142 294 -18 1604 160 0 16 chr1 28907177 28907427 -253286237 + AluSq SINE Alu 1 246 -67 1067 86 0 0 chr1 28907429 28907568 -253286096 + AluSg/x SINE Alu 172 310 -2 2182 98 7 7 chr1 28907573 28907860 -253285804 + AluSx SINE Alu 9 295 -17 1143 175 130 29 chr1 28907879 28908125 -253285539 - AluJo SINE Alu -12 300 30 400 243 39 0 chr1 28908181 28908284 -253285380 + HAL1 LINE L1 1824 1930 -577 1009 241 67 82 chr1 28908291 28908694 -253284970 + LTR16A LTR ERVL 1 397 -53 2470 74 0 3 chr1 28908749 28909048 -253284616 - AluY SINE Alu -13 298 1 310 206 342 22 chr1 28909048 28909276 -253284388 + HAL1 LINE L1 1941 2241 -266 1335 121 9 40 chr1 28909287 28909510 -253284154 + AluJb SINE Alu 85 300 -12 569 203 0 14 chr1 28909512 28909650 -253284014 + HAL1 LINE L1 2258 2393 -114 920 128 8 8 chr1 28909672 28909805 -253283859 - FLAM_C SINE Alu -10 133 1 227 309 144 10 chr1 28909871 28909968 -253283696 + L2 LINE L2 3193 3302 -11 1469 127 9 5 chr1 28910049 28910262 -253283402 + AluJb SINE Alu 87 300 -12 450 315 24 0 chr1 28910328 28910493 -253283171 + L2 LINE L2 2884 3052 -220 220 278 56 19 chr1 28910559 28910667 -253282997 - L2 LINE L2 -499 2815 2704 1487 91 11 0 chr1 28910842 28911029 -253282635 - AluSg/x SINE Alu -10 302 114 22 35 0 0 chr1 29111211 29111240 -253082424 + AT_rich Low_complexity Low_complexity 1 29 0 318 254 26 26 chr1 29111484 29111598 -253082066 + MIR SINE MIR 24 137 -71 216 0 0 0 chr1 29112211 29112235 -253081429 + (T)n Simple_repeat Simple_repeat 1 24 0 237 279 140 22 chr1 29112897 29113026 -253080638 - MIR3 SINE MIR -10 198 56 474 252 0 9 chr1 29113970 29114077 -253079587 + MIR SINE MIR 9 114 -148 1955 132 20 0 chr1 29114085 29114380 -253079284 - AluSx SINE Alu -9 303 3 283 333 0 11 chr1 29114386 29114479 -253079185 - MIR SINE MIR -101 107 16 206 198 78 27 chr1 29114684 29114763 -253078901 + MIR SINE MIR 83 174 -34 215 204 148 0 chr1 29115156 29115210 -253078454 - L2 LINE L2 -218 3054 2993 2147 117 7 0 chr1 29115215 29115513 -253078151 + AluSx SINE Alu 1 300 -12 200 324 18 100 chr1 29115763 29115933 -253077731 - MIR SINE MIR -5 257 102 541 289 112 46 chr1 29116320 29116765 -253076899 + L2 LINE L2 2593 3077 -236 430 300 209 9 chr1 29116790 29117020 -253076644 - L2 LINE L2 -40 3273 2998 208 333 140 7 chr1 29117070 29117220 -253076444 - L2 LINE L2 -436 2878 2709 285 227 218 0 chr1 29117900 29118010 -253075654 - MIR3 SINE MIR -53 155 22 214 253 107 53 chr1 29118333 29118483 -253075181 - L2 LINE L2 -495 2819 2662 231 292 35 70 chr1 29119239 29119356 -253074308 + MIR SINE MIR 13 129 -97 1196 208 45 5 chr1 29119370 29119671 -253073993 - L1ME3 LINE L1 -178 5984 5675 189 0 0 0 chr1 29119761 29119782 -253073882 + (T)n Simple_repeat Simple_repeat 1 21 0 1841 135 17 14 chr1 29119961 29120249 -253073415 + AluJo SINE Alu 7 295 -17 2019 123 14 3 chr1 29120272 29120564 -253073100 + AluSx SINE Alu 1 295 -17 346 330 175 10 chr1 29120737 29120943 -253072721 + MIR SINE MIR 22 261 -1 503 294 123 18 chr1 29120944 29121114 -253072550 - MIR3 SINE MIR -6 202 15 2233 104 0 0 chr1 29121245 29121542 -253072122 + AluSg SINE Alu 1 297 -13 2124 128 0 6 chr1 29121938 29122251 -253071413 + AluSx SINE Alu 1 311 -1 491 337 29 24 chr1 29122669 29122874 -253070790 - MIR SINE MIR -18 244 39 323 270 11 11 chr1 29122856 29122945 -253070719 - MIR3 SINE MIR -8 200 112 * 324 164 82 0 chr1 29123076 29123149 -253070515 + MER105 DNA DNA 106 184 -20 442 211 35 26 chr1 29123205 29123319 -253070345 + MIR SINE MIR 90 204 -58 279 0 0 0 chr1 29123329 29123360 -253070304 + (TA)n Simple_repeat Simple_repeat 1 31 0 1841 120 0 97 chr1 29123360 29123544 -253070120 - AluSx SINE Alu -3 309 172 2208 104 3 0 chr1 29123544 29123841 -253069823 - AluSc SINE Alu -11 298 1 1841 120 0 97 chr1 29123841 29123998 -253069666 - AluSx SINE Alu -140 172 1 430 277 68 7 chr1 29124503 29124651 -253069013 + MIR SINE MIR 36 192 -70 2134 102 3 16 chr1 29124907 29125221 -253068443 + AluSg SINE Alu 1 310 0 327 189 40 0 chr1 29125237 29125311 -253068353 - MIR SINE MIR -98 110 34 293 266 46 9 chr1 29125371 29125481 -253068183 + MIR SINE MIR 87 200 -56 557 282 17 12 chr1 29125558 29125744 -253067920 + MIR3 SINE MIR 17 201 -7 243 0 0 0 chr1 29126325 29126352 -253067312 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2106 89 3 11 chr1 29126352 29126634 -253067030 - AluSq SINE Alu -33 280 1 1853 143 7 7 chr1 29126634 29126935 -253066729 - AluJb SINE Alu -11 301 1 300 338 52 26 chr1 29126962 29127116 -253066548 - MIR SINE MIR -46 216 59 396 312 136 7 chr1 29127287 29127441 -253066223 - MIR3 SINE MIR -10 198 25 315 297 36 9 chr1 29127786 29127897 -253065767 + MIR SINE MIR 24 137 -71 1865 146 4 4 chr1 29128011 29128292 -253065372 + AluJb SINE Alu 1 281 -31 315 237 76 107 chr1 29128570 29128701 -253064963 - L2 LINE L2 -10 3262 3136 1074 275 167 16 chr1 29128964 29129421 -253064243 - L2 LINE L2 -2 3311 2924 2182 103 7 0 chr1 29129421 29129713 -253063951 + AluSc SINE Alu 1 294 -15 1074 275 167 16 chr1 29129713 29129765 -253063899 - L2 LINE L2 -389 2924 2881 2128 141 0 0 chr1 29129765 29130077 -253063587 + AluSx SINE Alu 1 312 0 1074 275 167 16 chr1 29130077 29130308 -253063356 - L2 LINE L2 -432 2881 2430 1239 72 24 0 chr1 29131403 29131569 -253062095 + AluSg/x SINE Alu 123 292 -20 2235 88 0 38 chr1 29131593 29131912 -253061752 + AluSx SINE Alu 1 307 -5 337 194 71 20 chr1 29131912 29132003 -253061661 + MIR SINE MIR 140 238 -24 295 177 23 200 chr1 29133348 29133430 -253060234 - L2 LINE L2 -192 3080 3028 2059 113 30 3 chr1 29133430 29133732 -253059932 - AluSx SINE Alu -2 310 1 295 177 23 200 chr1 29133732 29133779 -253059885 - L2 LINE L2 -244 3028 2974 241 353 39 39 chr1 29134105 29134258 -253059406 - MIR3 SINE MIR -49 159 7 459 292 39 15 chr1 29134600 29134730 -253058934 + MIR3 SINE MIR 30 162 -46 1739 139 3 11 chr1 29134819 29135106 -253058558 - AluSq SINE Alu -14 299 15 1853 129 44 0 chr1 29135312 29135620 -253058044 + AluSq SINE Alu 1 320 0 632 115 0 0 chr1 29135656 29135743 -253057921 - AluSc SINE Alu -19 290 204 882 211 70 11 chr1 29135964 29136149 -253057515 + MIR SINE MIR 1 196 -66 396 0 0 0 chr1 29136651 29136695 -253056969 + (TG)n Simple_repeat Simple_repeat 2 45 0 326 297 68 0 chr1 29136916 29137034 -253056630 + MIR3 SINE MIR 76 201 -7 514 289 54 0 chr1 29137961 29138110 -253055554 + MIR SINE MIR 87 243 -19 2054 101 0 79 chr1 29139342 29139660 -253054004 - AluSx SINE Alu -19 293 1 183 365 173 0 chr1 29139859 29139963 -253053701 - L2 LINE L2 -10 3303 3182 998 185 50 5 chr1 29140006 29140206 -253053458 - AluJo SINE Alu -103 209 1 546 227 23 8 chr1 29140594 29140722 -253052942 + MIR3 SINE MIR 30 159 -49 390 239 181 7 chr1 29140915 29141053 -253052611 - L3 LINE CR1 -78 1499 1338 296 308 58 10 chr1 29141215 29141319 -253052345 - MIR SINE MIR -50 212 104 558 302 112 19 chr1 29142029 29142244 -253051420 - MIR SINE MIR -23 239 5 1727 167 14 3 chr1 29142268 29142561 -253051103 - AluJo SINE Alu -16 296 1 300 173 80 10 chr1 29142578 29142682 -253050982 + MIR SINE MIR 84 202 -6 259 234 36 99 chr1 29142777 29142832 -253050832 + MIR SINE MIR 69 115 -147 2355 88 0 3 chr1 29142832 29143137 -253050527 - AluSx SINE Alu -8 304 1 259 234 36 99 chr1 29143137 29143192 -253050472 + MIR SINE MIR 115 172 -90 203 291 148 30 chr1 29143664 29143836 -253049828 + MIR SINE MIR 11 197 -51 530 308 133 13 chr1 29144025 29144077 -253049587 - MIR SINE MIR 0 262 218 1405 170 73 35 chr1 29144077 29144245 -253049419 - AluJo SINE Alu -12 300 115 252 0 0 0 chr1 29144245 29144273 -253049391 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1405 170 73 35 chr1 29144273 29144393 -253049271 - AluJo SINE Alu -197 115 1 530 308 133 13 chr1 29144393 29144574 -253049090 - MIR SINE MIR -44 218 1 206 369 46 3 chr1 29145166 29145346 -253048318 + MIR SINE MIR 34 225 -37 286 266 113 8 chr1 29145439 29145563 -253048101 - MER5B DNA MER1_type -7 171 35 249 326 57 21 chr1 29145545 29145686 -253047978 - MIR3 SINE MIR -11 197 52 * 736 272 77 0 chr1 29145693 29145888 -253047776 - MIR SINE MIR -24 238 29 197 391 23 8 chr1 29147098 29147226 -253046438 + MIR SINE MIR 2 131 -131 1650 163 43 0 chr1 29147226 29147508 -253046156 - AluSq SINE Alu -19 294 1 213 341 8 32 chr1 29148141 29148264 -253045400 - MER5A DNA MER1_type -5 184 65 420 218 70 21 chr1 29148264 29148406 -253045258 - L1MC5 LINE L1 -30 7931 7783 598 149 0 0 chr1 29148953 29149047 -253044617 + MIR SINE MIR 52 145 -63 2201 105 10 3 chr1 29149150 29149455 -253044209 + AluSq SINE Alu 1 307 -6 388 284 59 0 chr1 29149463 29149565 -253044099 + MIR SINE MIR 38 145 -63 506 340 31 11 chr1 29149575 29149766 -253043898 + MIR3 SINE MIR 5 199 -9 202 253 53 53 chr1 29149832 29149927 -253043737 + MIR SINE MIR 39 133 -129 1528 174 10 27 chr1 29150061 29150359 -253043305 + AluJb SINE Alu 3 295 -17 2510 68 0 0 chr1 29150366 29150673 -253042991 + AluSx SINE Alu 1 307 -5 678 276 48 24 chr1 29150810 29151020 -253042644 + MIR SINE MIR 31 245 -17 191 349 0 0 chr1 29151108 29151171 -253042493 - MIR SINE MIR -160 102 40 1132 137 149 38 chr1 29156712 29156805 -253036859 + MER46B DNA MER2_type 69 150 -2581 2269 98 0 0 chr1 29156805 29157100 -253036564 + AluSx SINE Alu 1 295 -17 1132 137 149 38 chr1 29157100 29157268 -253036396 + MER46B DNA MER2_type 150 234 -2 442 219 10 0 chr1 29157537 29157633 -253036031 + MER2 DNA MER2_type 1 97 -248 419 135 504 0 chr1 29157644 29157784 -253035880 - MER2 DNA MER2_type -16 329 119 296 150 17 17 chr1 29157784 29157844 -253035820 + AluJ/FLAM SINE Alu 1 60 -242 825 179 0 0 chr1 29158487 29158638 -253035026 + L1MB5 LINE L1 6012 6162 -12 1929 90 0 55 chr1 29158732 29159043 -253034621 - AluY SINE Alu -17 294 1 834 342 29 45 chr1 29159086 29159514 -253034150 - ERVL LTR ERVL -313 5341 4962 2282 120 0 3 chr1 29159514 29159823 -253033841 - AluSx SINE Alu -4 308 1 834 342 29 45 chr1 29159823 29160125 -253033539 - ERVL LTR ERVL -692 4962 4657 2247 120 13 0 chr1 29160185 29160493 -253033171 + AluSx SINE Alu 1 312 0 315 122 0 0 chr1 29160493 29160542 -253033122 + (GGGAA)n Simple_repeat Simple_repeat 2 50 0 1760 159 134 20 chr1 29160612 29161053 -253032611 - Charlie1b DNA MER1_type -1 522 32 2519 321 57 51 chr1 29161054 29161163 -253032501 - ERVL LTR ERVL -1456 4308 4201 1114 181 112 120 chr1 29161163 29161444 -253032220 - MLT1D LTR MaLR 0 505 223 2436 82 3 0 chr1 29161444 29161738 -253031926 + AluSp SINE Alu 1 295 -18 1114 181 112 120 chr1 29161738 29161804 -253031860 - MLT1D LTR MaLR -282 223 158 1786 145 10 37 chr1 29161804 29162100 -253031564 - AluJo SINE Alu -24 288 1 1114 181 112 120 chr1 29162100 29162171 -253031493 - MLT1D LTR MaLR -347 158 88 2094 138 0 7 chr1 29162171 29162468 -253031196 + AluSx SINE Alu 1 295 -17 1114 181 112 120 chr1 29162468 29162556 -253031108 - MLT1D LTR MaLR -417 88 1 2519 321 57 51 chr1 29162556 29163423 -253030241 - ERVL LTR ERVL -1563 4201 3340 2308 108 7 0 chr1 29163423 29163719 -253029945 - AluSx SINE Alu -14 298 1 2577 61 0 0 chr1 29163727 29164024 -253029640 - AluY SINE Alu -14 297 1 2519 321 57 51 chr1 29164024 29164849 -253028815 - ERVL LTR ERVL -2430 3334 2487 536 278 35 23 chr1 29165036 29165209 -253028455 - ERVL LTR ERVL -2716 3048 2874 972 98 0 0 chr1 29165501 29165634 -253028030 - FLAM_C SINE Alu 0 133 1 471 354 30 13 chr1 29165650 29165887 -253027777 - ERVL LTR ERVL -4709 1055 815 254 406 51 0 chr1 29165980 29166177 -253027487 - ERVL LTR ERVL -5129 635 429 649 185 130 5 chr1 29166548 29166748 -253026916 - LTR33 LTR ERVL 0 521 297 273 226 24 36 chr1 29166754 29166838 -253026826 - LTR33 LTR ERVL -437 84 2 2094 100 43 4 chr1 29166861 29167140 -253026524 + AluSx SINE Alu 1 290 -22 553 97 67 0 chr1 29167191 29167356 -253026308 + (TG)n Simple_repeat Simple_repeat 1 176 0 266 65 65 26 chr1 29167370 29167447 -253026217 + (TG)n Simple_repeat Simple_repeat 1 80 0 449 91 75 22 chr1 29167489 29167812 -253025852 + (TG)n Simple_repeat Simple_repeat 1 340 0 241 200 0 0 chr1 29168391 29168441 -253025223 - L2 LINE L2 0 3313 3264 1565 115 0 5 chr1 29168458 29168667 -253024997 + AluSx SINE Alu 1 208 -104 896 107 20 53 chr1 29168667 29168817 -253024847 + AluSg/x SINE Alu 165 309 0 267 159 0 0 chr1 29168829 29168873 -253024791 - L2 LINE L2 -83 3230 3187 214 233 27 41 chr1 29168900 29168973 -253024691 + L2 LINE L2 2991 3062 -251 205 281 94 16 chr1 29170254 29170318 -253023346 + MIR SINE MIR 20 88 -174 1102 158 0 6 chr1 29170361 29170532 -253023132 + AluJb SINE Alu 134 303 -9 2145 105 3 56 chr1 29170585 29170720 -253022944 + AluSx SINE Alu 1 142 -170 2297 94 16 3 chr1 29170720 29170842 -253022822 + AluSq SINE Alu 1 120 -193 255 31 0 0 chr1 29170842 29170874 -253022790 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2297 94 16 3 chr1 29170874 29171060 -253022604 + AluSq SINE Alu 120 313 0 2145 105 3 56 chr1 29171060 29171248 -253022416 + AluSx SINE Alu 142 307 -5 611 188 0 76 chr1 29171254 29171398 -253022266 + FLAM_A SINE Alu 1 133 0 2124 128 7 3 chr1 29171446 29171751 -253021913 + AluSp SINE Alu 1 306 -7 367 260 31 10 chr1 29171753 29171849 -253021815 - MIR SINE MIR -86 122 25 301 331 89 0 chr1 29173093 29173217 -253020447 + MIR SINE MIR 105 239 -23 311 254 8 100 chr1 29173436 29173566 -253020098 - MIR3 SINE MIR -53 155 38 283 246 100 5 chr1 29174426 29174523 -253019141 - MIR SINE MIR -77 131 33 303 230 93 79 chr1 29175015 29175113 -253018551 - MIR SINE MIR -12 250 148 2410 86 0 10 chr1 29175113 29175426 -253018238 - AluSq SINE Alu -3 310 1 303 230 93 79 chr1 29175426 29175466 -253018198 - MIR SINE MIR -114 148 110 311 258 58 58 chr1 29175641 29175761 -253017903 - MIR3 SINE MIR -22 186 67 2153 151 131 96 chr1 29177310 29177810 -253015854 + MLT1E1 LTR MaLR 64 545 -109 252 0 0 0 chr1 29177810 29177838 -253015826 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2245 98 7 0 chr1 29177840 29178117 -253015547 - AluSx SINE Alu -32 280 2 2153 151 131 96 chr1 29178117 29178184 -253015480 + MLT1E1 LTR MaLR 545 654 0 275 342 108 56 chr1 29178245 29178336 -253015328 - L2 LINE L2 -1638 1676 1591 1639 159 39 39 chr1 29178336 29178644 -253015020 + AluJo SINE Alu 1 308 -4 275 342 108 56 chr1 29178644 29179247 -253014417 - L2 LINE L2 -1723 1591 946 847 262 129 36 chr1 29179283 29179749 -253013915 - MLT1J LTR MaLR -2 509 1 317 278 20 66 chr1 29179798 29179949 -253013715 - L1ME LINE L1 -344 5777 5634 475 353 43 30 chr1 29180106 29180435 -253013229 + L1MEd LINE L1 337 669 -5450 2495 70 3 0 chr1 29180481 29180780 -253012884 + AluSp SINE Alu 1 300 -13 2210 113 0 0 chr1 29180796 29181089 -253012575 + AluSg SINE Alu 1 293 -17 1624 238 36 91 chr1 29181172 29181305 -253012359 + L1ME3A LINE L1 5176 5315 -855 2288 99 0 7 chr1 29181305 29181608 -253012056 + AluSg SINE Alu 3 303 -7 1624 238 36 91 chr1 29181608 29181636 -253012028 + L1ME3A LINE L1 5315 5343 -827 1800 165 0 17 chr1 29181636 29181933 -253011731 + AluJb SINE Alu 18 309 -3 1624 238 36 91 chr1 29181933 29182352 -253011312 + L1ME3A LINE L1 5343 5783 -387 1799 133 36 14 chr1 29182352 29182630 -253011034 + AluJb SINE Alu 29 312 0 387 0 0 0 chr1 29182636 29182679 -253010985 + (TA)n Simple_repeat Simple_repeat 1 43 0 1624 238 36 91 chr1 29182679 29183123 -253010541 + L1ME3A LINE L1 5788 6155 -15 350 223 0 86 chr1 29183143 29183198 -253010466 + L1M4 LINE L1 3342 3400 -2746 2386 97 3 0 chr1 29183198 29183496 -253010168 + AluSq SINE Alu 1 299 -14 350 223 0 86 chr1 29183496 29183579 -253010085 + L1M4 LINE L1 3400 3468 -2678 1345 216 101 61 chr1 29183585 29183652 -253010012 - MLT1E LTR MaLR 0 593 530 2411 99 0 0 chr1 29183652 29183955 -253009709 + AluY SINE Alu 1 303 -8 1345 216 101 61 chr1 29183955 29184262 -253009402 - MLT1E LTR MaLR -63 530 204 254 114 0 0 chr1 29184268 29184303 -253009361 + AluJo/FLAM SINE Alu 87 121 -181 2085 71 11 14 chr1 29184305 29184586 -253009078 - AluY SINE Alu -18 293 14 1854 111 4 0 chr1 29184689 29184933 -253008731 + AluSq SINE Alu 47 291 -22 2248 108 3 13 chr1 29185011 29185326 -253008338 + AluSx SINE Alu 1 312 0 292 244 50 76 chr1 29185533 29185555 -253008109 + L2 LINE L2 2690 2711 -603 1961 155 30 0 chr1 29185555 29185851 -253007813 + AluJo SINE Alu 1 305 -7 292 244 50 76 chr1 29185851 29185947 -253007717 + L2 LINE L2 2711 2805 -509 687 238 60 16 chr1 29185979 29186164 -253007500 + MIR SINE MIR 70 262 0 1439 59 0 6 chr1 29186426 29186595 -253007069 + AluY SINE Alu 1 168 -143 1896 192 71 21 chr1 29186595 29187032 -253006632 - LTR2B LTR ERV1 0 490 32 1099 70 14 0 chr1 29187051 29187193 -253006471 + AluY SINE Alu 165 308 -3 183 240 40 0 chr1 29187276 29187326 -253006338 - MER5A DNA MER1_type -2 187 136 2602 74 0 0 chr1 29187339 29187648 -253006016 + AluSx SINE Alu 1 309 -3 1082 73 0 0 chr1 29188551 29188688 -253004976 + AluSg/x SINE Alu 175 311 -1 507 258 149 9 chr1 29189614 29189835 -253003829 + MLT1L LTR MaLR 39 290 -325 738 303 29 21 chr1 29189904 29190145 -253003519 + MIR SINE MIR 20 262 0 337 172 0 0 chr1 29190147 29190205 -253003459 + MLT1L LTR MaLR 335 392 -223 1132 137 11 39 chr1 29190273 29190455 -253003209 - AluJb SINE Alu -5 307 131 2467 86 0 3 chr1 29190474 29190778 -253002886 + AluSg SINE Alu 1 303 -7 549 260 10 73 chr1 29191017 29191124 -253002540 + MLT1J LTR MaLR 10 101 -410 2275 101 0 22 chr1 29191124 29191441 -253002223 + AluSx SINE Alu 1 310 -2 549 260 10 73 chr1 29191441 29191525 -253002139 + MLT1J LTR MaLR 101 189 -322 2005 147 0 33 chr1 29191565 29191725 -253001939 - AluJb SINE Alu -16 296 132 243 0 0 0 chr1 29191725 29191752 -253001912 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2264 90 0 0 chr1 29191752 29192031 -253001633 - AluSg1 SINE Alu -30 279 1 2005 147 0 33 chr1 29192031 29192175 -253001489 - AluJb SINE Alu -178 134 1 234 171 110 24 chr1 29192232 29192314 -253001350 + MLT1J LTR MaLR 403 491 -20 660 258 148 32 chr1 29192390 29192828 -253000836 - MLT1H LTR MaLR 0 549 19 183 184 0 0 chr1 29193075 29193113 -253000551 + A-rich Low_complexity Low_complexity 5 42 0 264 320 0 0 chr1 29193339 29193414 -253000250 - MER5A DNA MER1_type -6 183 109 1185 102 57 23 chr1 29193416 29193574 -253000090 - AluSg/x SINE Alu -11 301 135 2153 136 0 3 chr1 29193574 29193884 -252999780 - AluJb SINE Alu -3 309 1 1185 102 57 23 chr1 29193884 29193901 -252999763 - AluSg/x SINE Alu -177 135 120 2595 68 3 0 chr1 29194031 29194342 -252999322 - AluSq SINE Alu -1 312 1 239 186 14 43 chr1 29194571 29194641 -252999023 + MLT1K LTR MaLR 182 249 -339 2005 86 13 70 chr1 29194830 29195144 -252998520 - AluSx SINE Alu -16 296 1 995 31 78 0 chr1 29195542 29195671 -252997993 - MER85 DNA T2_type 0 139 1 2318 186 19 77 chr1 29195753 29196133 -252997531 + MLT1F LTR MaLR 1 401 -141 2291 102 7 0 chr1 29196133 29196426 -252997238 - AluSx SINE Alu -17 295 1 2318 186 19 77 chr1 29196426 29196551 -252997113 + MLT1F LTR MaLR 401 472 -70 2259 96 0 14 chr1 29196551 29196881 -252996783 - AluSp SINE Alu 0 313 1 2318 186 19 77 chr1 29196881 29196945 -252996719 + MLT1F LTR MaLR 472 538 -4 3951 97 97 3 chr1 29197238 29197827 -252995837 + LTR9B LTR ERV1 1 644 0 265 159 0 0 chr1 29198110 29198154 -252995510 + MSTC LTR MaLR 1 44 -384 363 322 0 0 chr1 29198184 29198274 -252995390 + L1MC4 LINE L1 6614 6703 -1339 2657 55 0 3 chr1 29198277 29198586 -252995078 - AluY SINE Alu -3 308 1 1850 168 0 10 chr1 29198587 29198884 -252994780 - AluJb SINE Alu -18 294 1 2311 154 15 5 chr1 29198885 29199274 -252994390 + MSTC LTR MaLR 36 428 0 2141 109 0 0 chr1 29200212 29200487 -252993177 + AluSx SINE Alu 3 277 -35 2316 106 0 0 chr1 29201536 29201829 -252991835 + AluSx SINE Alu 1 293 -19 851 120 0 0 chr1 29202241 29202374 -252991290 + FLAM_C SINE Alu 1 133 0 257 180 0 16 chr1 29202379 29202440 -252991224 + GA-rich Low_complexity Low_complexity 2 61 0 271 237 9 105 chr1 29202842 29202956 -252990708 + LTR37A LTR ERV1 83 185 -241 546 184 14 18 chr1 29202958 29203109 -252990555 + LTR37A LTR ERV1 289 420 -6 259 236 0 0 chr1 29203405 29203460 -252990204 + MIR SINE MIR 95 149 -113 608 198 15 99 chr1 29204072 29204194 -252989470 - MIR SINE MIR -12 250 119 2260 96 3 0 chr1 29204194 29204485 -252989179 + AluSx SINE Alu 1 292 -20 2174 119 3 3 chr1 29204486 29204781 -252988883 + AluSq SINE Alu 3 297 -16 608 198 15 99 chr1 29204781 29204858 -252988806 - MIR SINE MIR -142 120 66 2168 108 7 29 chr1 29204962 29205289 -252988375 + AluSq SINE Alu 1 313 0 265 132 0 0 chr1 29205289 29205327 -252988337 + AluSq SINE Alu 134 171 -132 538 301 74 9 chr1 29205356 29205572 -252988092 + L2 LINE L2 3082 3311 -2 22 0 0 0 chr1 29205993 29206015 -252987649 + AT_rich Low_complexity Low_complexity 1 22 0 2218 113 3 7 chr1 29206049 29206359 -252987305 - AluSq SINE Alu -4 309 1 205 208 125 0 chr1 29206653 29206701 -252986963 - MIR SINE MIR -65 143 90 2244 117 7 0 chr1 29206750 29207050 -252986614 + AluSx SINE Alu 2 303 -9 465 318 60 0 chr1 29207143 29207294 -252986370 + MIR SINE MIR 47 206 -56 356 315 0 39 chr1 29207525 29207655 -252986009 - L2 LINE L2 -1 3271 3147 2497 80 0 0 chr1 29207693 29207995 -252985669 + AluY SINE Alu 2 303 -8 414 227 73 9 chr1 29208008 29208118 -252985546 - LTR16A LTR ERVL -188 262 146 184 207 121 86 chr1 29208118 29208234 -252985430 - L2 LINE L2 -271 3042 2923 276 347 116 15 chr1 29208295 29208494 -252985170 - L2 LINE L2 -541 2773 2555 483 283 0 0 chr1 29208701 29208814 -252984850 - LTR16A LTR ERVL -148 302 190 183 235 0 0 chr1 29208935 29208969 -252984695 + MIR SINE MIR 221 254 -8 262 240 21 13 chr1 29209307 29209417 -252984247 - LTR33A LTR ERVL -9 535 433 411 115 16 0 chr1 29209765 29209826 -252983838 - AluS SINE Alu -246 63 2 989 122 39 6 chr1 29209843 29209999 -252983665 + FRAM SINE Alu 1 156 -20 665 185 28 139 chr1 29210011 29210117 -252983547 - MLT1E LTR MaLR -398 195 79 2210 93 7 3 chr1 29210117 29210419 -252983245 + AluSq SINE Alu 2 304 -9 2480 71 3 0 chr1 29210420 29210731 -252982933 + AluSp SINE Alu 1 312 -1 665 185 28 139 chr1 29210731 29210838 -252982826 - MLT1E LTR MaLR -513 80 4 284 277 0 0 chr1 29211001 29211066 -252982598 - L1ME LINE L1 -521 5600 5536 299 255 7 72 chr1 29211090 29211243 -252982421 - L1MC4 LINE L1 -5 8037 7895 275 121 241 0 chr1 29211252 29211310 -252982354 - L1ME2 LINE L1 -206 5958 5887 1252 102 0 6 chr1 29211312 29211489 -252982175 - AluSg/x SINE Alu 0 312 137 1159 211 71 20 chr1 29211490 29211784 -252981880 - L1ME2 LINE L1 -275 5889 5581 541 221 0 0 chr1 29211784 29211888 -252981776 + FLAM_C SINE Alu 39 142 -1 275 211 9 37 chr1 29211905 29212014 -252981650 + GA-rich Low_complexity Low_complexity 3 108 0 1037 229 21 21 chr1 29212022 29212302 -252981362 - L1ME2 LINE L1 -617 5547 5268 1096 161 37 155 chr1 29212305 29212659 -252981005 + AluYb8 SINE Alu 1 312 -6 2297 92 0 3 chr1 29212730 29213033 -252980631 - AluSx SINE Alu -10 302 1 1606 100 9 0 chr1 29213170 29213399 -252980265 + AluSg/x SINE Alu 82 312 0 370 183 37 0 chr1 29213401 29213483 -252980181 - L1ME2 LINE L1 -1053 5093 5009 287 269 29 39 chr1 29213483 29213507 -252980157 - MIR SINE MIR -78 184 161 2040 100 17 0 chr1 29213507 29213796 -252979868 + AluSx SINE Alu 1 294 -18 287 269 29 39 chr1 29213796 29213875 -252979789 - MIR SINE MIR -101 161 82 395 296 155 54 chr1 29214308 29214676 -252978988 - MERVL LTR ERVL -462 5302 4898 388 283 102 97 chr1 29214679 29214744 -252978920 - MERVL LTR ERVL -878 4776 4713 1729 164 11 3 chr1 29214744 29215031 -252978633 - AluJo SINE Alu -23 289 1 388 283 102 97 chr1 29215031 29215222 -252978442 - MERVL LTR ERVL -941 4713 4524 2175 125 0 0 chr1 29215222 29215526 -252978138 - AluSx SINE Alu -8 304 1 388 283 102 97 chr1 29215526 29215872 -252977792 - MERVL LTR ERVL -1130 4524 4168 446 215 0 6 chr1 29215883 29216060 -252977604 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 378 239 0 0 chr1 29216076 29216252 -252977412 + (CCTG)n Simple_repeat Simple_repeat 3 178 0 2234 101 7 0 chr1 29216765 29217073 -252976591 - AluSx SINE Alu -1 311 2 376 324 45 28 chr1 29217213 29217460 -252976204 - MERVL LTR ERVL -1684 4080 3830 565 302 88 47 chr1 29218202 29218520 -252975144 - MERVL LTR ERVL -2156 3498 3168 339 282 10 115 chr1 29218828 29218958 -252974706 - MER5A DNA MER1_type -2 187 45 1762 140 29 52 chr1 29218958 29219138 -252974526 - AluJo SINE Alu -2 300 128 2024 107 10 20 chr1 29219138 29219272 -252974392 + AluSx SINE Alu 1 135 -177 2235 110 0 0 chr1 29219272 29219581 -252974083 + AluSg1 SINE Alu 1 309 0 2024 107 10 20 chr1 29219581 29219746 -252973918 + AluSx SINE Alu 135 297 -15 1762 140 29 52 chr1 29219746 29219872 -252973792 - AluJo SINE Alu -174 128 1 339 282 10 115 chr1 29219872 29219950 -252973714 - MER5A DNA MER1_type -144 45 1 1368 268 48 20 chr1 29220003 29220398 -252973266 - MLT1J LTR MaLR -1 510 105 21 57 0 0 chr1 29220550 29220585 -252973079 + AT_rich Low_complexity Low_complexity 1 35 0 1933 122 20 7 chr1 29220619 29220922 -252972742 + AluSx SINE Alu 6 312 0 338 0 24 0 chr1 29220954 29220996 -252972668 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 526 307 40 0 chr1 29221147 29221323 -252972341 - MIR SINE MIR -71 191 9 2095 122 0 0 chr1 29221354 29221650 -252972014 - AluY SINE Alu -14 297 2 220 297 182 0 chr1 29221853 29222001 -252971663 - L2 LINE L2 -829 2485 2311 2320 94 3 0 chr1 29222313 29222621 -252971043 - AluSx SINE Alu -3 309 1 595 265 213 9 chr1 29222668 29222879 -252970785 + MIR SINE MIR 6 259 -3 1602 157 14 31 chr1 29223079 29223373 -252970291 + AluJo SINE Alu 11 299 -13 606 245 44 13 chr1 29223373 29223532 -252970132 - MIR SINE MIR -79 183 20 2334 90 3 0 chr1 29223574 29223885 -252969779 + AluSp SINE Alu 1 312 -1 314 299 17 26 chr1 29224345 29224462 -252969202 - MIR SINE MIR -55 153 38 394 273 9 18 chr1 29224472 29224582 -252969082 + MIR SINE MIR 34 142 -120 477 0 0 0 chr1 29224648 29224701 -252968963 + (CA)n Simple_repeat Simple_repeat 2 54 0 212 295 89 18 chr1 29224943 29225055 -252968609 + L2 LINE L2 3153 3272 0 421 285 8 16 chr1 29225133 29225256 -252968408 + MIR SINE MIR 19 140 -68 * 673 232 378 0 chr1 29225254 29225446 -252968218 - L2 LINE L2 -264 3049 2931 2055 127 3 0 chr1 29225446 29225745 -252967919 - AluSg SINE Alu -10 300 1 673 232 378 0 chr1 29225745 29225974 -252967690 - L2 LINE L2 -382 2931 2462 501 268 106 11 chr1 29225981 29226350 -252967314 - MLT1H LTR MaLR 0 549 108 200 136 0 45 chr1 29226580 29226624 -252967040 + (GGGTG)n Simple_repeat Simple_repeat 3 44 0 215 295 155 16 chr1 29226658 29226787 -252966877 - L2 LINE L2 -24 3248 3102 250 281 0 0 chr1 29226992 29227056 -252966608 - MIR SINE MIR -112 150 87 2018 118 13 7 chr1 29228374 29228680 -252964984 + AluSx SINE Alu 1 308 -4 1187 113 0 32 chr1 29228682 29228868 -252964796 + AluSg/x SINE Alu 127 306 -6 312 286 20 41 chr1 29229503 29229601 -252964063 - L1MC4 LINE L1 -1339 6703 6608 2121 64 0 0 chr1 29229614 29229878 -252963786 + AluY SINE Alu 4 267 -44 1767 135 10 7 chr1 29230030 29230319 -252963345 - AluSc SINE Alu -14 295 6 2141 116 0 3 chr1 29230325 29230627 -252963037 - AluSx SINE Alu -11 301 1 765 221 159 0 chr1 29230939 29231165 -252962499 + L2 LINE L2 2100 2361 -953 2147 90 13 7 chr1 29231316 29231615 -252962049 - AluSq SINE Alu -12 301 1 246 62 0 0 chr1 29231624 29231656 -252962008 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 2269 88 0 0 chr1 29231664 29231961 -252961703 + AluSx SINE Alu 1 297 -15 271 262 166 28 chr1 29231961 29232097 -252961567 - MER112 DNA MER1_type -90 170 12 2229 121 95 67 chr1 29232252 29232598 -252961066 + LTR47A LTR ERVL 1 364 -88 1931 87 0 4 chr1 29232598 29232947 -252960717 - AluSq SINE Alu 0 379 32 2229 121 95 67 chr1 29232947 29233029 -252960635 + LTR47A LTR ERVL 364 442 -10 231 358 46 0 chr1 29233235 29233344 -252960320 + L2 LINE L2 2898 3011 -302 662 269 35 15 chr1 29233344 29233541 -252960123 - MLT1K LTR MaLR -69 519 319 1446 118 0 0 chr1 29233563 29233767 -252959897 + AluSg1 SINE Alu 1 204 -105 424 300 0 52 chr1 29233792 29233921 -252959743 - MLT1K LTR MaLR -289 299 165 2299 74 24 0 chr1 29233921 29234219 -252959445 + AluSp SINE Alu 1 305 -8 424 300 0 52 chr1 29234219 29234334 -252959330 - MLT1K LTR MaLR -423 165 2 495 307 89 6 chr1 29234401 29234580 -252959084 + L2 LINE L2 3119 3312 -1 875 187 6 16 chr1 29234624 29234806 -252958858 - AluJb SINE Alu -1 311 132 1847 93 108 4 chr1 29234827 29235096 -252958568 + AluSx SINE Alu 1 297 -15 1960 133 14 0 chr1 29235103 29235397 -252958267 + AluSx SINE Alu 1 298 -14 2433 56 0 3 chr1 29235840 29236142 -252957522 - AluY SINE Alu -10 301 1 803 149 8 0 chr1 29236353 29236474 -252957190 - FLAM_C SINE Alu -19 124 3 972 278 141 29 chr1 29236474 29237148 -252956516 + L2 LINE L2 2345 3093 -220 443 233 101 57 chr1 29237160 29237319 -252956345 + MIR SINE MIR 28 193 -69 2210 40 44 0 chr1 29237343 29237683 -252955981 + AluY SINE Alu 1 352 0 814 110 34 0 chr1 29237720 29237838 -252955826 - AluJo SINE Alu -21 291 170 870 186 41 52 chr1 29237941 29238135 -252955529 - AluJo SINE Alu -119 193 2 1037 164 19 0 chr1 29238154 29238313 -252955351 - FRAM SINE Alu -4 162 1 453 256 8 41 chr1 29238386 29238507 -252955157 + L2 LINE L2 3196 3312 -1 2159 80 19 32 chr1 29238615 29238928 -252954736 + AluSx SINE Alu 1 309 -3 1721 162 3 7 chr1 29239862 29240152 -252953512 - AluJb SINE Alu -23 289 1 309 258 226 0 chr1 29240160 29240253 -252953411 - MIR SINE MIR -62 146 33 2111 116 0 19 chr1 29240259 29240569 -252953095 - AluSg SINE Alu -4 306 3 206 292 11 56 chr1 29240981 29241070 -252952594 - MIR3 SINE MIR -24 184 100 222 324 49 20 chr1 29241244 29241346 -252952318 + L2 LINE L2 3140 3244 -28 182 366 151 0 chr1 29243647 29243740 -252949924 - MIR3 SINE MIR -21 187 81 2116 63 53 3 chr1 29243797 29244081 -252949583 + AluY SINE Alu 1 298 -13 227 239 34 45 chr1 29244081 29244169 -252949495 + MER34 LTR ERV1 427 513 -29 596 246 0 0 chr1 29244206 29244320 -252949344 - MIR SINE MIR -141 121 8 827 188 0 0 chr1 29244343 29244497 -252949167 + FRAM SINE Alu 1 153 -23 1172 146 13 53 chr1 29244512 29244738 -252948926 + AluSg SINE Alu 49 265 -45 1251 92 6 0 chr1 29244827 29244991 -252948673 - AluSp SINE Alu -148 165 1 272 150 0 0 chr1 29244991 29245031 -252948633 - Alu SINE Alu -263 40 1 765 181 25 12 chr1 29245327 29245487 -252948177 + MER5A DNA MER1_type 10 171 -18 1361 176 112 7 chr1 29245563 29245841 -252947823 - AluJb SINE Alu -5 307 1 298 157 20 0 chr1 29245866 29245917 -252947747 + AluSp SINE Alu 134 185 -118 612 259 49 16 chr1 29246017 29246202 -252947462 - MIR SINE MIR -59 203 13 343 229 124 57 chr1 29246271 29246376 -252947288 - L2 LINE L2 0 3313 3202 1900 120 46 0 chr1 29246376 29246659 -252947005 - AluSx SINE Alu -16 296 1 763 156 16 0 chr1 29246689 29246811 -252946853 - AluJb SINE Alu -187 125 2 263 327 84 0 chr1 29247105 29247147 -252946517 - MIR3 SINE MIR -3 205 168 2075 109 0 23 chr1 29247147 29247450 -252946214 - AluSx SINE Alu -16 296 1 263 327 84 0 chr1 29247450 29247514 -252946150 - MIR3 SINE MIR -40 168 90 2220 92 3 10 chr1 29247601 29247906 -252945758 - AluSg SINE Alu -6 304 2 1873 144 23 3 chr1 29248332 29248638 -252945026 - AluSx SINE Alu 0 312 1 1212 196 71 25 chr1 29248640 29248920 -252944744 - AluJo SINE Alu -16 296 4 2345 88 3 0 chr1 29248935 29249241 -252944423 - AluSx SINE Alu -5 307 1 1629 188 11 0 chr1 29249247 29249534 -252944130 - AluJb SINE Alu -22 290 1 237 225 135 0 chr1 29249589 29249678 -252943986 + MIR3 SINE MIR 99 199 -9 460 274 36 63 chr1 29249797 29249854 -252943810 - MIR SINE MIR -15 247 190 2069 128 3 3 chr1 29249854 29250159 -252943505 - AluSg SINE Alu -5 305 1 2120 116 0 3 chr1 29250159 29250460 -252943204 - AluSx SINE Alu -12 300 1 460 274 36 63 chr1 29250460 29250638 -252943026 - MIR SINE MIR -70 192 18 1757 244 74 41 chr1 29250687 29251348 -252942316 + L2 LINE L2 742 1424 -1890 789 97 9 0 chr1 29251415 29251527 -252942137 + MER41E LTR ERV1 15 127 -385 1307 166 32 16 chr1 29251527 29251831 -252941833 + MER61B LTR ERV1 1 396 -28 2397 117 20 30 chr1 29251841 29252012 -252941652 + MER41E LTR ERV1 124 295 -217 2244 110 0 3 chr1 29252012 29252322 -252941342 + AluSx SINE Alu 1 309 -3 2397 117 20 30 chr1 29252322 29252543 -252941121 + MER41E LTR ERV1 295 512 0 521 245 103 86 chr1 29252543 29252775 -252940889 + L2 LINE L2 1422 1648 -1666 1589 156 7 28 chr1 29252775 29253093 -252940571 + AluJo SINE Alu 1 312 0 2240 86 3 3 chr1 29253098 29253400 -252940264 + AluSx SINE Alu 1 302 -10 521 245 103 86 chr1 29253400 29253499 -252940165 + L2 LINE L2 1651 1766 -1548 1978 105 7 14 chr1 29253624 29253784 -252939880 - AluSx SINE Alu -18 294 135 2166 88 7 3 chr1 29253784 29254091 -252939573 - AluSq SINE Alu -5 308 1 1978 105 7 14 chr1 29254091 29254226 -252939438 - AluSx SINE Alu -177 135 1 266 208 65 0 chr1 29254263 29254340 -252939324 - MIR3 SINE MIR -52 156 75 446 226 0 0 chr1 29255365 29255449 -252938215 + MER63A DNA MER1_type 90 173 -37 235 313 61 35 chr1 29255814 29256012 -252937652 + L2 LINE L2 1340 1542 -1772 2288 97 0 7 chr1 29256013 29256322 -252937342 - AluSx SINE Alu -5 307 1 489 293 172 23 chr1 29256385 29256733 -252936931 + L2 LINE L2 2830 3229 -84 1703 61 0 73 chr1 29257461 29257706 -252935958 + AluSg/x SINE Alu 85 311 -1 789 235 69 14 chr1 29258289 29258506 -252935158 + MIR SINE MIR 20 248 -14 1971 117 4 0 chr1 29258506 29258837 -252934827 - AluSx SINE Alu 0 332 1 453 308 48 0 chr1 29258887 29259033 -252934631 - MIR SINE MIR -29 233 81 354 179 317 16 chr1 29259714 29259761 -252933903 + MIR SINE MIR 103 135 -127 2246 112 0 0 chr1 29259761 29260074 -252933590 + AluSq SINE Alu 1 313 0 354 179 317 16 chr1 29260074 29260149 -252933515 + MIR SINE MIR 135 262 0 262 240 21 13 chr1 29260443 29260553 -252933111 + LTR33A LTR ERVL 433 514 -9 183 235 0 0 chr1 29260891 29260925 -252932739 - MIR SINE MIR -8 254 221 483 283 0 0 chr1 29261046 29261159 -252932505 + LTR16A LTR ERVL 190 302 -148 303 340 129 0 chr1 29261360 29261554 -252932110 + L2 LINE L2 2555 2773 -541 414 227 73 9 chr1 29261731 29261841 -252931823 + LTR16A LTR ERVL 146 262 -188 2366 79 0 0 chr1 29261854 29262157 -252931507 - AluY SINE Alu -7 304 2 380 308 0 39 chr1 29262195 29262325 -252931339 + L2 LINE L2 3147 3271 -1 473 318 60 0 chr1 29262556 29262707 -252930957 - MIR SINE MIR -56 206 47 2175 118 3 0 chr1 29262798 29263104 -252930560 - AluSx SINE Alu -5 307 1 205 208 125 0 chr1 29263153 29263201 -252930463 + MIR SINE MIR 90 143 -65 2100 110 3 7 chr1 29263495 29263804 -252929860 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr1 29263838 29263860 -252929804 + AT_rich Low_complexity Low_complexity 1 22 0 550 301 74 9 chr1 29264285 29264501 -252929163 - L2 LINE L2 -2 3311 3082 268 132 0 0 chr1 29264530 29264568 -252929096 - AluSq SINE Alu -132 171 134 2031 108 7 29 chr1 29264568 29264895 -252928769 - AluSq SINE Alu 0 313 1 616 198 15 99 chr1 29264999 29265076 -252928588 + MIR SINE MIR 66 148 -114 2098 112 3 3 chr1 29265076 29265371 -252928293 - AluSq SINE Alu -16 297 3 2154 93 3 0 chr1 29265372 29265663 -252928001 - AluSx SINE Alu -20 292 1 616 198 15 99 chr1 29265663 29265785 -252927879 + MIR SINE MIR 147 250 -12 265 236 0 0 chr1 29266396 29266451 -252927213 - MIR SINE MIR -113 149 95 604 165 22 3 chr1 29266747 29266895 -252926769 - LTR37A LTR ERV1 -6 420 289 269 267 14 89 chr1 29266897 29267043 -252926621 - LTR37A LTR ERV1 -241 185 51 257 180 0 16 chr1 29267413 29267474 -252926190 + CT-rich Low_complexity Low_complexity 2 61 0 908 120 0 0 chr1 29267480 29267613 -252926051 - FLAM_C SINE Alu 0 133 1 2071 62 0 69 chr1 29268024 29268330 -252925334 - AluSc SINE Alu -19 290 6 378 283 145 0 chr1 29268376 29268514 -252925150 - MER5A DNA MER1_type -6 183 26 292 260 0 0 chr1 29269299 29269372 -252924292 - MIR SINE MIR -111 151 79 1049 109 12 6 chr1 29269508 29269673 -252923991 - AluSg/x SINE Alu -17 295 130 271 301 65 11 chr1 29270105 29270198 -252923466 + MIR SINE MIR 98 195 -67 340 296 134 43 chr1 29270206 29270392 -252923272 + MIR SINE MIR 9 211 -51 2095 104 21 0 chr1 29270494 29270783 -252922881 + AluSg SINE Alu 3 297 -13 660 217 29 0 chr1 29270793 29270931 -252922733 + MIR SINE MIR 50 191 -71 784 263 93 32 chr1 29274340 29274546 -252919118 - L2 LINE L2 -32 3281 3048 2314 99 0 0 chr1 29274546 29274848 -252918816 + AluSx SINE Alu 1 302 -10 784 263 93 32 chr1 29274848 29274953 -252918711 - L2 LINE L2 -265 3048 2951 274 318 52 19 chr1 29275080 29275234 -252918430 - MIR SINE MIR 0 262 104 2175 66 4 0 chr1 29275421 29275693 -252917971 - AluSg SINE Alu -12 298 26 676 274 100 73 chr1 29275795 29276120 -252917544 + LTR33 LTR ERVL 67 382 -139 1756 134 4 0 chr1 29276120 29276382 -252917282 - AluSx SINE Alu -49 263 1 676 274 100 73 chr1 29276382 29276428 -252917236 + LTR33 LTR ERVL 382 425 -96 1674 151 39 7 chr1 29276428 29276712 -252916952 - AluJo SINE Alu -19 293 1 676 274 100 73 chr1 29276712 29276780 -252916884 + LTR33 LTR ERVL 425 519 -2 1556 100 0 0 chr1 29278404 29278614 -252915050 - AluSq SINE Alu -14 299 90 499 269 67 21 chr1 29278932 29279110 -252914554 + MIR SINE MIR 64 249 -13 925 94 23 0 chr1 29279575 29279703 -252913961 - AluY SINE Alu -180 131 1 1901 101 77 3 chr1 29280464 29280750 -252912914 - AluSx SINE Alu -5 307 1 2127 114 3 0 chr1 29281875 29282182 -252911482 + AluSp SINE Alu 1 308 -5 21 36 0 0 chr1 29283349 29283377 -252910287 + GC_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr1 29283977 29284015 -252909649 + GC_rich Low_complexity Low_complexity 1 38 0 27 81 0 0 chr1 29284226 29284288 -252909376 + GC_rich Low_complexity Low_complexity 1 62 0 218 296 0 31 chr1 29284363 29284461 -252909203 + G-rich Low_complexity Low_complexity 5 99 0 30 0 0 0 chr1 29284710 29284740 -252908924 + GC_rich Low_complexity Low_complexity 1 30 0 195 286 24 71 chr1 29284962 29285088 -252908576 + MIR3 SINE MIR 13 132 -76 2272 82 0 7 chr1 29285364 29285668 -252907996 + AluSx SINE Alu 1 302 -10 1955 108 33 10 chr1 29285718 29286023 -252907641 + AluSx SINE Alu 1 312 0 190 360 0 13 chr1 29286023 29286098 -252907566 - MIR SINE MIR -77 131 58 189 246 43 14 chr1 29287242 29287311 -252906353 + MIR SINE MIR 36 106 -156 411 262 55 0 chr1 29287368 29287524 -252906140 - MIR SINE MIR -67 141 20 260 227 23 45 chr1 29287641 29287729 -252905935 + L2 LINE L2 3187 3272 0 2138 120 0 16 chr1 29287732 29287868 -252905796 + AluSx SINE Alu 1 138 -174 2049 110 0 10 chr1 29287868 29288186 -252905478 + AluSc SINE Alu 1 309 0 2138 120 0 16 chr1 29288186 29288365 -252905299 + AluSx SINE Alu 138 311 -1 296 24 24 0 chr1 29288381 29288422 -252905242 + (GA)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr1 29288443 29288463 -252905201 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 981 178 28 6 chr1 29288463 29288638 -252905026 + AluSg/x SINE Alu 134 312 0 492 143 0 0 chr1 29288638 29288722 -252904942 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 1086 121 24 0 chr1 29288859 29289048 -252904616 - AluSg/x SINE Alu 0 303 111 2135 122 0 7 chr1 29290064 29290401 -252903263 - AluSx SINE Alu 0 312 1 285 356 0 29 chr1 29291062 29291190 -252902474 - MIR SINE MIR -65 143 27 2051 120 13 10 chr1 29291190 29291499 -252902165 - AluSq SINE Alu -1 312 3 285 356 0 29 chr1 29291499 29291512 -252902152 - MIR SINE MIR -181 27 15 201 176 0 0 chr1 29291512 29291546 -252902118 + T-rich Low_complexity Low_complexity 1 34 0 1420 100 0 0 chr1 29291571 29291761 -252901903 + AluSg/x SINE Alu 117 306 -6 1488 180 25 11 chr1 29291761 29292039 -252901625 - AluJo SINE Alu -30 282 1 1875 140 3 17 chr1 29292041 29292341 -252901323 - AluJb SINE Alu -15 297 2 428 132 0 40 chr1 29292582 29292658 -252901006 + Alu SINE Alu 237 309 -3 921 301 54 15 chr1 29292665 29293074 -252900590 + L1ME LINE L1 5338 5762 -408 2129 98 3 0 chr1 29293074 29293361 -252900303 + AluSp SINE Alu 25 312 -1 1480 120 152 4 chr1 29293374 29293624 -252900040 + AluJb SINE Alu 1 287 -25 2143 118 44 25 chr1 29293642 29293708 -252899956 - MER41E LTR ERV1 -142 370 307 2324 89 3 0 chr1 29293708 29294012 -252899652 - AluSq SINE Alu -8 305 1 2143 118 44 25 chr1 29294012 29294308 -252899356 - MER41E LTR ERV1 -205 307 1 1181 241 192 14 chr1 29294389 29295239 -252898425 - L2 LINE L2 -1 3312 2284 480 228 29 66 chr1 29295242 29295421 -252898243 + AluSg/x SINE Alu 152 325 0 848 228 73 79 chr1 29295422 29295630 -252898034 - L2 LINE L2 -1078 2236 2028 1920 131 7 7 chr1 29295630 29295928 -252897736 + AluSx SINE Alu 3 300 -12 848 228 73 79 chr1 29295928 29295953 -252897711 - L2 LINE L2 -1286 2028 2004 2107 126 0 0 chr1 29295953 29296255 -252897409 + AluSx SINE Alu 1 302 -10 848 228 73 79 chr1 29296255 29296336 -252897328 - L2 LINE L2 -1310 2004 1923 2173 138 79 3 chr1 29296336 29296771 -252896893 + L1M4 LINE L1 5211 5669 -509 2129 108 3 22 chr1 29296773 29297087 -252896577 + AluSx SINE Alu 1 308 -4 1136 85 24 0 chr1 29297099 29297263 -252896401 + AluY SINE Alu 2 169 -142 2150 116 7 3 chr1 29297442 29297745 -252895919 - AluSx SINE Alu -6 306 3 1939 146 0 13 chr1 29297758 29298073 -252895591 - AluSx SINE Alu -1 311 1 1893 151 0 3 chr1 29298076 29298375 -252895289 - AluSx SINE Alu -11 301 4 1642 180 17 3 chr1 29298376 29298676 -252894988 - AluJb SINE Alu -8 304 1 771 216 119 16 chr1 29298700 29298894 -252894770 + L1MC4 LINE L1 6766 6979 -1063 1633 164 7 17 chr1 29298947 29299239 -252894425 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 29299249 29299318 -252894346 + MER69 DNA AcHobo 2453 2524 -2 619 175 58 0 chr1 29299323 29299443 -252894221 - MIR SINE MIR -109 153 27 230 351 147 11 chr1 29299595 29299786 -252893878 - MIR SINE MIR -25 237 21 244 284 136 0 chr1 29300090 29300178 -252893486 + MIR SINE MIR 23 122 -140 180 212 0 0 chr1 29300227 29300260 -252893404 + MIR SINE MIR 218 250 -12 366 224 0 0 chr1 29300265 29300332 -252893332 + L1MC4 LINE L1 6637 6703 -1339 * 380 276 23 0 chr1 29300292 29300379 -252893285 - L1MC4 LINE L1 -1339 6703 6615 2052 128 0 0 chr1 29300379 29300668 -252892996 - AluSx SINE Alu -23 289 1 425 292 124 0 chr1 29302009 29302048 -252891616 - MIR SINE MIR -46 216 183 2130 102 0 13 chr1 29302048 29302352 -252891312 - AluSx SINE Alu -12 300 1 425 292 124 0 chr1 29302352 29302497 -252891167 - MIR SINE MIR -79 183 9 1095 212 68 24 chr1 29302813 29303063 -252890601 - MIR SINE MIR 0 262 2 1640 151 6 63 chr1 29305945 29306078 -252887586 + AluJo SINE Alu 11 150 -162 2210 103 0 0 chr1 29306078 29306378 -252887286 + AluSx SINE Alu 1 300 -12 1537 103 66 4 chr1 29306381 29306623 -252887041 + AluSg1 SINE Alu 53 309 0 1640 151 6 63 chr1 29306623 29306803 -252886861 + AluJo SINE Alu 152 310 -2 2320 88 0 0 chr1 29307160 29307456 -252886208 - AluSq SINE Alu -17 296 1 493 350 111 37 chr1 29307853 29308285 -252885379 - L2 LINE L2 0 3272 2809 2364 76 0 0 chr1 29308464 29308785 -252884879 - AluY SINE Alu 0 321 1 248 206 151 111 chr1 29308790 29308888 -252884776 - MIR SINE MIR -10 252 146 1846 139 20 14 chr1 29308888 29309049 -252884615 - AluSx SINE Alu -15 297 132 1970 97 13 13 chr1 29309049 29309357 -252884307 - AluSp SINE Alu -5 308 1 1846 139 20 14 chr1 29309357 29309490 -252884174 - AluSx SINE Alu -180 132 1 248 206 151 111 chr1 29309490 29309517 -252884147 - MIR SINE MIR -116 146 122 636 302 42 31 chr1 29309518 29309806 -252883858 + MER34 LTR ERV1 3 293 -249 2281 63 0 3 chr1 29309907 29310191 -252883473 + AluSq SINE Alu 14 296 -17 2369 69 0 3 chr1 29310191 29310495 -252883169 + AluY SINE Alu 1 303 -8 2214 103 0 3 chr1 29310644 29310945 -252882719 - AluSg SINE Alu -10 300 1 237 342 0 13 chr1 29310993 29311069 -252882595 + MIR SINE MIR 31 105 -157 2004 137 7 3 chr1 29311091 29311397 -252882267 + AluSx SINE Alu 5 311 -1 249 283 0 0 chr1 29311749 29311809 -252881855 + L2 LINE L2 3211 3270 -2 * 574 222 66 75 chr1 29311807 29311948 -252881716 - MIR SINE MIR 0 262 122 1712 141 3 44 chr1 29311948 29312245 -252881419 + AluJo SINE Alu 12 296 -16 574 222 66 75 chr1 29312245 29312315 -252881349 - MIR SINE MIR -140 122 53 1974 105 49 0 chr1 29312323 29312609 -252881055 - AluSg SINE Alu -10 300 1 6408 71 15 41 chr1 29312808 29313785 -252879879 - SVA Other Other -2 1384 433 4635 76 68 55 chr1 29313803 29314603 -252879061 - SVA Other Other -520 866 57 378 0 0 0 chr1 29314603 29314645 -252879019 + (GGGAGA)n Simple_repeat Simple_repeat 5 46 0 2213 95 3 0 chr1 29314649 29314943 -252878721 - AluSx SINE Alu -17 295 1 214 154 0 96 chr1 29315216 29315268 -252878396 + MIR SINE MIR 177 223 -39 2135 103 3 0 chr1 29315403 29315693 -252877971 + AluSq SINE Alu 1 291 -22 2114 108 3 13 chr1 29315771 29316086 -252877578 + AluSx SINE Alu 1 312 0 295 244 50 76 chr1 29316293 29316315 -252877349 + L2 LINE L2 2690 2711 -603 1840 155 30 0 chr1 29316315 29316611 -252877053 + AluJo SINE Alu 1 305 -7 295 244 50 76 chr1 29316611 29316707 -252876957 + L2 LINE L2 2711 2805 -509 705 241 71 14 chr1 29316712 29316924 -252876740 + MIR SINE MIR 39 262 0 1343 65 0 6 chr1 29317186 29317355 -252876309 + AluY SINE Alu 1 168 -143 1939 192 71 21 chr1 29317355 29317792 -252875872 - LTR2B LTR ERV1 0 490 32 1036 70 14 0 chr1 29317811 29317953 -252875711 + AluY SINE Alu 165 308 -3 2468 68 0 0 chr1 29318097 29318405 -252875259 + AluY SINE Alu 1 308 -3 1026 73 0 0 chr1 29319308 29319445 -252874219 + AluSg/x SINE Alu 175 311 -1 537 267 149 9 chr1 29320371 29320592 -252873072 + MLT1L LTR MaLR 39 290 -325 889 303 24 1 chr1 29320643 29320898 -252872766 + MIR SINE MIR 2 262 0 342 172 0 0 chr1 29320900 29320958 -252872706 + MLT1L LTR MaLR 335 392 -223 1034 129 10 67 chr1 29321013 29321206 -252872458 - AluJb SINE Alu 0 312 131 2031 93 18 0 chr1 29321225 29321538 -252872126 + AluSx SINE Alu 1 318 0 428 0 19 0 chr1 29321777 29321829 -252871835 + (TG)n Simple_repeat Simple_repeat 2 54 0 1225 161 22 52 chr1 29321830 29322097 -252871567 - AluJo SINE Alu -53 259 1 836 181 0 0 chr1 29322147 29322280 -252871384 - FLAM_A SINE Alu 0 133 1 393 185 0 12 chr1 29322316 29322397 -252871267 - MER116 DNA Mariner 0 80 1 768 275 61 26 chr1 29322415 29322757 -252870907 - L1ME3A LINE L1 -220 5950 5597 195 278 237 0 chr1 29322935 29323032 -252870632 - MIR SINE MIR -57 205 86 277 253 0 36 chr1 29323046 29323129 -252870535 + MIR SINE MIR 90 169 -93 2107 75 4 4 chr1 29323179 29323486 -252870178 - AluSg SINE Alu 0 307 1 400 296 154 24 chr1 29323841 29324088 -252869576 - L2 LINE L2 -2 3270 2992 266 322 81 20 chr1 29325200 29325349 -252868315 - MIR SINE MIR -21 241 84 492 331 35 6 chr1 29325585 29325757 -252867907 + MIR SINE MIR 20 196 -66 203 320 0 0 chr1 29325763 29325813 -252867851 + L2 LINE L2 3184 3233 -39 369 263 122 19 chr1 29326108 29326264 -252867400 + MIR SINE MIR 78 249 -13 322 179 35 172 chr1 29326256 29326331 -252867333 + L2 LINE L2 3189 3273 -40 * 2161 82 13 16 chr1 29326331 29326636 -252867028 + AluY SINE Alu 1 304 -7 322 179 35 172 chr1 29326636 29326648 -252867016 + L2 LINE L2 3273 3285 -28 1896 114 14 7 chr1 29326648 29326952 -252866712 + AluSx SINE Alu 1 306 0 322 179 35 172 chr1 29326952 29327007 -252866657 + L2 LINE L2 3285 3313 0 278 279 122 55 chr1 29327254 29327491 -252866173 - L2 LINE L2 -24 3248 2996 861 188 79 41 chr1 29327494 29327529 -252866135 - L1MC4 LINE L1 -31 8011 7979 1585 179 6 31 chr1 29327529 29327847 -252865817 + AluJo SINE Alu 1 310 -2 861 188 79 41 chr1 29327847 29328383 -252865281 - L1MC4 LINE L1 -63 7979 7317 250 258 0 75 chr1 29328466 29328559 -252865105 - MIR SINE MIR -93 115 30 2239 92 0 0 chr1 29328794 29329089 -252864575 - AluSg SINE Alu -15 295 1 4313 119 19 34 chr1 29329577 29329606 -252864058 - L1MB3 LINE L1 -14 6169 6141 2147 127 0 0 chr1 29329606 29329905 -252863759 + AluSx SINE Alu 1 299 -13 4313 119 19 34 chr1 29329905 29330152 -252863512 - L1MB3 LINE L1 -42 6141 5892 1995 145 0 0 chr1 29330152 29330455 -252863209 - AluJb SINE Alu -7 305 3 4313 119 19 34 chr1 29330455 29330875 -252862789 - L1MB3 LINE L1 -291 5892 5483 1020 152 147 0 chr1 29330909 29331113 -252862551 + MER46A DNA MER2_type 2 235 -1 2383 86 0 9 chr1 29331116 29331431 -252862233 - AluSx SINE Alu 0 312 1 287 303 96 10 chr1 29333757 29333917 -252859747 - MIR SINE MIR -64 144 14 2270 80 3 16 chr1 29334992 29335304 -252858360 - AluSp SINE Alu -5 308 1 248 161 74 62 chr1 29335362 29335443 -252858221 - MIR SINE MIR -112 150 69 1944 127 0 39 chr1 29336047 29336207 -252857457 - AluSx SINE Alu -16 296 152 2347 77 0 0 chr1 29336207 29336505 -252857159 - AluY SINE Alu -13 298 1 1944 127 0 39 chr1 29336505 29336652 -252857012 - AluSx SINE Alu -160 152 1 2163 103 13 0 chr1 29337259 29337560 -252856104 - AluSx SINE Alu -7 305 1 312 216 148 0 chr1 29337584 29337672 -252855992 - MIR SINE MIR -75 133 33 2048 107 0 4 chr1 29339081 29339361 -252854303 - AluSq SINE Alu -24 289 11 1703 106 12 4 chr1 29339363 29339608 -252854056 - AluSg SINE Alu -63 247 1 1705 144 53 7 chr1 29339633 29339918 -252853746 + AluJb SINE Alu 2 299 -13 1902 76 0 59 chr1 29339936 29340224 -252853440 + AluY SINE Alu 1 271 -40 432 214 24 63 chr1 29340392 29340518 -252853146 + L2 LINE L2 3193 3313 0 1672 157 0 34 chr1 29340624 29340917 -252852747 + AluJo SINE Alu 13 295 -17 223 244 39 13 chr1 29341520 29341598 -252852066 - L2 LINE L2 -23 3290 3211 2290 84 0 0 chr1 29341821 29342117 -252851547 - AluSg1 SINE Alu -12 297 2 359 246 197 0 chr1 29342723 29342865 -252850799 + MIR SINE MIR 43 212 -50 1929 104 25 53 chr1 29342901 29343219 -252850445 + AluSc SINE Alu 1 309 0 1525 107 0 13 chr1 29343222 29343447 -252850217 + AluSc SINE Alu 79 300 -9 2262 88 3 3 chr1 29343630 29343936 -252849728 - AluSp SINE Alu -7 306 1 272 150 0 0 chr1 29343936 29343976 -252849688 - Alu SINE Alu -268 40 1 765 181 25 12 chr1 29344272 29344432 -252849232 + MER5A DNA MER1_type 10 171 -18 1376 173 112 7 chr1 29344508 29344786 -252848878 - AluJb SINE Alu -5 307 1 1755 112 22 77 chr1 29344813 29345125 -252848539 + AluSx SINE Alu 1 295 -17 223 226 75 43 chr1 29345130 29345223 -252848441 + L2 LINE L2 2934 3029 -243 1932 159 13 0 chr1 29346182 29346490 -252847174 + AluJb SINE Alu 1 312 0 1498 162 7 65 chr1 29346550 29346858 -252846806 + AluJb SINE Alu 3 292 -20 1861 252 57 13 chr1 29346861 29347334 -252846330 + MER21B LTR ERV1 308 801 -62 368 176 24 12 chr1 29347359 29347444 -252846220 + L1MC5 LINE L1 7397 7482 -479 24 32 0 0 chr1 29347457 29347488 -252846176 + AT_rich Low_complexity Low_complexity 1 31 0 1803 112 16 70 chr1 29347491 29347641 -252846023 + AluSq SINE Alu 1 158 -155 2305 99 0 0 chr1 29347641 29347954 -252845710 + AluSp SINE Alu 1 313 0 324 0 0 0 chr1 29347958 29347994 -252845670 + (TA)n Simple_repeat Simple_repeat 2 37 0 1803 112 16 70 chr1 29347994 29348152 -252845512 + AluSq SINE Alu 161 297 -16 892 147 0 0 chr1 29348154 29348283 -252845381 - FLAM_C SINE Alu -4 129 1 1961 123 13 19 chr1 29348434 29348752 -252844912 + THE1C LTR MaLR 1 316 -59 479 83 14 0 chr1 29348773 29348845 -252844819 - THE1B LTR MaLR 0 364 292 2319 87 0 3 chr1 29348846 29349157 -252844507 + AluSx SINE Alu 1 310 -2 2369 58 7 0 chr1 29349173 29349467 -252844197 + AluY SINE Alu 1 296 -15 423 119 15 0 chr1 29349467 29349534 -252844130 + THE1C LTR MaLR 307 374 -1 789 94 14 22 chr1 29349534 29349672 -252843992 + THE1C-int LTR MaLR 1444 1580 0 1763 141 80 47 chr1 29349672 29349961 -252843703 + THE1C LTR MaLR 1 306 -69 2067 125 0 0 chr1 29349961 29350257 -252843407 - AluSc SINE Alu -13 296 1 1763 141 80 47 chr1 29350257 29350330 -252843334 + THE1C LTR MaLR 306 375 0 2436 216 31 25 chr1 29350330 29350416 -252843248 + L1MB2 LINE L1 5522 5606 -565 2276 100 7 0 chr1 29350416 29350725 -252842939 + AluSq SINE Alu 1 311 -2 2436 216 31 25 chr1 29350725 29350897 -252842767 + L1MB2 LINE L1 5606 5775 -396 1688 86 127 15 chr1 29350897 29351164 -252842500 + AluSg SINE Alu 1 297 -13 2436 216 31 25 chr1 29351164 29351508 -252842156 + L1MB2 LINE L1 5775 6132 -39 1492 173 47 47 chr1 29351508 29351651 -252842013 + AluJb SINE Alu 1 143 -159 2068 130 0 13 chr1 29351651 29351959 -252841705 + AluSg SINE Alu 1 304 -6 1492 173 47 47 chr1 29351959 29352116 -252841548 + AluJb SINE Alu 142 301 -1 2011 119 0 44 chr1 29352144 29352339 -252841325 + AluSg SINE Alu 1 178 -132 2338 87 7 0 chr1 29352339 29352631 -252841033 - AluSc SINE Alu -19 290 1 2011 119 0 44 chr1 29352631 29352753 -252840911 + AluSg SINE Alu 178 304 -6 2331 85 0 0 chr1 29352753 29353034 -252840630 + AluSx SINE Alu 1 308 0 204 0 37 0 chr1 29353034 29353061 -252840603 + (CAAA)n Simple_repeat Simple_repeat 1 164 0 233 95 48 0 chr1 29353063 29353105 -252840559 + L1MB2 LINE L1 6118 6161 -10 2312 100 3 0 chr1 29353106 29353396 -252840268 - AluSx SINE Alu -21 291 1 1342 169 20 16 chr1 29353401 29353656 -252840008 - AluJo SINE Alu -12 300 45 1396 165 4 49 chr1 29353692 29353959 -252839705 + AluJb SINE Alu 42 296 -16 2441 96 0 0 chr1 29354085 29354388 -252839276 - AluSq SINE Alu -10 303 1 1023 230 69 45 chr1 29354491 29354705 -252838959 + MER2 DNA MER2_type 3 229 -116 831 150 0 0 chr1 29354705 29354838 -252838826 - FLAM_A SINE Alu 0 133 1 1023 230 69 45 chr1 29354838 29354958 -252838706 + MER2 DNA MER2_type 229 345 0 2320 177 32 9 chr1 29354958 29355422 -252838242 - L1MB3 LINE L1 -277 5906 5432 1036 193 0 0 chr1 29355423 29355589 -252838075 - AluJb SINE Alu -20 292 127 331 332 48 9 chr1 29355832 29356061 -252837603 - L1MB3 LINE L1 -1164 4982 4745 859 241 100 17 chr1 29356066 29356357 -252837307 + MER46C DNA MER2_type 19 333 -5 204 281 109 0 chr1 29356370 29356434 -252837230 - MIR SINE MIR -74 188 118 2340 110 0 0 chr1 29356434 29356742 -252836922 + AluSg SINE Alu 1 308 -2 286 228 114 0 chr1 29356746 29356825 -252836839 + FLAM_C SINE Alu 25 112 -21 432 0 0 0 chr1 29356825 29356873 -252836791 + (CA)n Simple_repeat Simple_repeat 2 49 0 236 179 0 0 chr1 29356897 29356936 -252836728 + Alu SINE Alu 240 278 -24 306 364 88 50 chr1 29356975 29357236 -252836428 + L2 LINE L2 2997 3267 -5 2232 121 7 0 chr1 29357239 29357546 -252836118 + AluSq SINE Alu 1 309 -4 206 292 254 15 chr1 29357669 29357799 -252835865 - MIR3 SINE MIR -15 193 33 1120 132 6 0 chr1 29357957 29358116 -252835548 + AluSp SINE Alu 137 296 -17 2408 99 3 0 chr1 29358116 29358419 -252835245 + AluSp SINE Alu 1 304 -9 2535 52 7 3 chr1 29358569 29358878 -252834786 - AluY SINE Alu -1 310 1 2239 113 0 0 chr1 29358956 29359280 -252834384 + AluSx SINE Alu 1 324 0 2274 119 3 0 chr1 29359286 29359588 -252834076 + AluSg SINE Alu 1 303 -7 221 287 167 0 chr1 29359647 29359755 -252833909 + MIR SINE MIR 40 165 -97 1958 101 36 22 chr1 29360377 29360655 -252833009 + AluSx SINE Alu 13 294 -18 289 274 44 18 chr1 29360808 29360921 -252832743 + MIR SINE MIR 122 237 -25 216 234 191 53 chr1 29361683 29361777 -252831887 - MIR SINE MIR -67 141 35 901 179 19 0 chr1 29362819 29362981 -252830683 + MER45A DNA AcHobo 2 166 -12 559 315 137 15 chr1 29362998 29363181 -252830483 + L2 LINE L2 1492 1651 -1663 1556 149 19 76 chr1 29363181 29363497 -252830167 - AluJo SINE Alu -14 298 1 559 315 137 15 chr1 29363497 29363640 -252830024 + L2 LINE L2 1651 1775 -1539 1995 114 45 14 chr1 29363640 29363929 -252829735 - AluSx SINE Alu -14 298 1 559 315 137 15 chr1 29363929 29364074 -252829590 + L2 LINE L2 1775 2022 -1292 1695 236 81 33 chr1 29364187 29364669 -252828995 + MER69 DNA AcHobo 41 545 -1981 1275 153 0 47 chr1 29364676 29364776 -252828888 + AluJb SINE Alu 1 104 -208 852 45 0 0 chr1 29364776 29364886 -252828778 + L1PA5 LINE L1 6040 6149 -5 1275 153 0 47 chr1 29364886 29365057 -252828607 + AluJb SINE Alu 104 304 -8 1923 150 3 35 chr1 29365059 29365261 -252828403 + AluSx SINE Alu 1 208 -104 2303 116 0 3 chr1 29365261 29365564 -252828100 + AluSq SINE Alu 1 302 -11 2209 91 27 7 chr1 29365564 29365860 -252827804 + AluSg SINE Alu 1 303 -7 1923 150 3 35 chr1 29365860 29365970 -252827694 + AluSx SINE Alu 206 304 -8 859 223 69 156 chr1 29365974 29366136 -252827528 + L1MC4a LINE L1 6470 6644 -1164 243 0 0 0 chr1 29366136 29366163 -252827501 + (TG)n Simple_repeat Simple_repeat 2 28 0 859 223 69 156 chr1 29366163 29366226 -252827438 + L1MC4a LINE L1 6644 6711 -1097 2269 119 7 3 chr1 29366226 29366529 -252827135 - AluSx SINE Alu -6 306 3 859 223 69 156 chr1 29366529 29366542 -252827122 + L1MC4a LINE L1 6711 6724 -1084 2066 146 0 13 chr1 29366542 29366857 -252826807 - AluSx SINE Alu -1 311 1 2015 151 0 3 chr1 29366860 29367159 -252826505 - AluSx SINE Alu -11 301 4 1765 180 17 3 chr1 29367160 29367460 -252826204 - AluJb SINE Alu -8 304 1 859 223 69 156 chr1 29367460 29367675 -252825989 + L1MC4a LINE L1 6725 6891 -917 1749 164 7 17 chr1 29367731 29368023 -252825641 - AluJo SINE Alu -14 298 10 344 159 43 0 chr1 29368033 29368102 -252825562 + MER69 DNA AcHobo 2453 2524 -2 618 175 58 0 chr1 29368107 29368227 -252825437 - MIR SINE MIR -109 153 27 210 351 147 11 chr1 29368379 29368570 -252825094 - MIR SINE MIR -25 237 21 240 284 136 0 chr1 29368874 29368962 -252824702 + MIR SINE MIR 23 122 -140 182 212 0 0 chr1 29369011 29369044 -252824620 + MIR SINE MIR 218 250 -12 364 224 0 0 chr1 29369049 29369116 -252824548 + L1MC4 LINE L1 6637 6703 -1339 352 294 47 0 chr1 29369072 29369157 -252824507 - L1MC4 LINE L1 -1339 6703 6615 * 2183 128 0 0 chr1 29369157 29369446 -252824218 - AluSx SINE Alu -23 289 1 407 286 124 0 chr1 29370787 29370826 -252822838 - MIR SINE MIR -46 216 183 2266 102 0 13 chr1 29370826 29371130 -252822534 - AluSx SINE Alu -12 300 1 407 286 124 0 chr1 29371130 29371275 -252822389 - MIR SINE MIR -79 183 9 1041 220 68 24 chr1 29371591 29371841 -252821823 - MIR SINE MIR 0 262 2 1760 151 6 72 chr1 29374710 29374856 -252818808 + AluJo SINE Alu 2 156 -156 2345 103 0 0 chr1 29374856 29375156 -252818508 + AluSx SINE Alu 1 300 -12 1640 103 66 4 chr1 29375159 29375401 -252818263 + AluSg1 SINE Alu 53 309 0 1760 151 6 72 chr1 29375401 29375581 -252818083 + AluJo SINE Alu 158 310 -2 2463 85 0 0 chr1 29375940 29376234 -252817430 - AluSq SINE Alu -19 294 1 467 350 111 37 chr1 29376631 29377063 -252816601 - L2 LINE L2 0 3272 2809 2507 76 0 0 chr1 29377242 29377563 -252816101 - AluY SINE Alu 0 321 1 250 206 151 111 chr1 29377568 29377666 -252815998 - MIR SINE MIR -10 252 146 1984 131 20 20 chr1 29377666 29377827 -252815837 - AluSx SINE Alu -15 297 134 2249 99 13 0 chr1 29377827 29378131 -252815533 - AluSp SINE Alu -5 308 1 1984 131 20 20 chr1 29378131 29378266 -252815398 - AluSx SINE Alu -177 135 1 250 206 151 111 chr1 29378266 29378293 -252815371 - MIR SINE MIR -116 146 122 555 257 127 84 chr1 29378294 29378683 -252814981 + MER34 LTR ERV1 3 374 -168 2413 87 0 0 chr1 29378683 29378982 -252814682 + AluSx SINE Alu 14 312 0 555 257 127 84 chr1 29378982 29378993 -252814671 + MER34 LTR ERV1 374 383 -159 2270 74 53 3 chr1 29378993 29379278 -252814386 + AluSx SINE Alu 1 299 -13 555 257 127 84 chr1 29379278 29379366 -252814298 + MER34 LTR ERV1 383 513 -29 602 246 0 0 chr1 29379403 29379517 -252814147 - MIR SINE MIR -141 121 8 880 188 0 0 chr1 29379540 29379694 -252813970 + FRAM SINE Alu 1 153 -23 1500 115 69 58 chr1 29379709 29379970 -252813694 + AluSx SINE Alu 49 312 0 2571 44 0 3 chr1 29380041 29380402 -252813262 - AluY SINE Alu 0 311 1 971 126 0 7 chr1 29380410 29380545 -252813119 - AluJo SINE Alu -178 134 1 21 89 0 0 chr1 29380632 29380688 -252812976 + AT_rich Low_complexity Low_complexity 1 56 0 228 109 22 22 chr1 29381016 29381062 -252812602 - MER92B LTR ERV1 0 636 591 2332 91 0 10 chr1 29381066 29381364 -252812300 - AluSx SINE Alu -17 295 1 764 203 32 6 chr1 29381371 29381529 -252812135 - AluJ SINE Alu -16 296 135 2420 194 70 20 chr1 29381566 29382127 -252811537 - MER92B LTR ERV1 -47 589 1 683 199 8 0 chr1 29382156 29382287 -252811377 - AluJ SINE Alu -170 132 1 2684 70 0 0 chr1 29382426 29382738 -252810926 + AluSx SINE Alu 1 312 0 273 166 5 8 chr1 29382743 29382960 -252810704 + AluJo SINE Alu 4 296 -6 598 263 89 58 chr1 29382970 29383331 -252810333 - L1ME LINE L1 -531 5631 5260 200 250 83 0 chr1 29383436 29383496 -252810168 - MIR SINE MIR -70 192 128 820 272 58 8 chr1 29384728 29384971 -252808693 - MIR SINE MIR -2 260 6 2149 136 7 3 chr1 29385165 29385475 -252808189 + AluJb SINE Alu 1 311 -1 1595 138 32 16 chr1 29385568 29385815 -252807849 + AluSx SINE Alu 50 300 -12 1856 136 21 4 chr1 29385968 29386275 -252807389 - AluJb SINE Alu 0 312 1 2560 68 0 0 chr1 29387094 29387390 -252806274 - AluY SINE Alu -15 296 1 2168 113 0 31 chr1 29387403 29387721 -252805943 - AluY SINE Alu -3 308 1 305 91 0 0 chr1 29387759 29387803 -252805861 + AluSg/x SINE Alu 192 235 -67 299 228 30 40 chr1 29387845 29387946 -252805718 - MIR SINE MIR -64 144 45 2300 87 28 0 chr1 29388201 29388487 -252805177 + AluSx SINE Alu 1 294 -18 1894 167 10 3 chr1 29388582 29388888 -252804776 - AluJo SINE Alu -4 308 1 541 316 17 17 chr1 29389086 29389263 -252804401 + MIR SINE MIR 42 218 -44 1045 176 12 0 chr1 29390137 29390307 -252803357 + AluJo SINE Alu 122 293 -19 2284 94 37 10 chr1 29390313 29390611 -252803053 + AluSc SINE Alu 2 307 -2 238 267 218 2 chr1 29391087 29391198 -252802466 + MIR SINE MIR 35 164 -59 214 314 0 0 chr1 29391178 29391229 -252802435 - L2 LINE L2 -83 3189 3139 * 642 160 56 0 chr1 29391863 29391988 -252801676 + AluJo/FLAM SINE Alu 2 133 -179 2279 107 0 13 chr1 29391990 29392124 -252801540 + AluSx SINE Alu 3 137 -175 2275 102 0 3 chr1 29392124 29392417 -252801247 + AluSg SINE Alu 1 292 -18 2279 107 0 13 chr1 29392417 29392592 -252801072 + AluSx SINE Alu 137 308 -4 215 273 66 41 chr1 29394466 29394587 -252799077 - MIR SINE MIR -118 144 21 * 452 285 63 6 chr1 29394548 29394706 -252798958 + MIR SINE MIR 31 197 -65 380 278 20 10 chr1 29395416 29395533 -252798131 + MIR SINE MIR 17 135 -73 326 265 122 0 chr1 29395536 29395634 -252798030 - L2 LINE L2 -272 3041 2932 914 189 65 5 chr1 29395635 29395820 -252797844 - MLT1A1 LTR MaLR 0 365 170 2502 71 0 3 chr1 29395971 29396267 -252797397 + AluSp SINE Alu 1 295 -18 2490 74 0 0 chr1 29396270 29396566 -252797098 + AluY SINE Alu 1 296 -15 280 223 98 54 chr1 29396866 29396978 -252796686 - MIR3 SINE MIR -23 185 69 2291 89 20 10 chr1 29397115 29397287 -252796377 - AluSq SINE Alu -8 305 127 2498 66 20 0 chr1 29397287 29397588 -252796076 - AluY SINE Alu -4 307 1 2291 89 20 10 chr1 29397588 29397717 -252795947 - AluSq SINE Alu -186 127 1 267 218 218 0 chr1 29397728 29397806 -252795858 - MIR SINE MIR -13 249 155 2506 77 0 0 chr1 29398252 29398552 -252795112 + AluY SINE Alu 1 300 -11 278 346 45 0 chr1 29398983 29399116 -252794548 - MIR SINE MIR -1 261 123 2088 123 3 3 chr1 29399123 29399432 -252794232 - AluSx SINE Alu 0 309 1 230 330 136 0 chr1 29399454 29399557 -252794107 - L2 LINE L2 -17 3296 3180 2120 72 0 0 chr1 29400068 29400319 -252793345 - AluY SINE Alu -7 304 54 2205 118 10 7 chr1 29400321 29400626 -252793038 - AluSq SINE Alu -7 306 1 1095 153 83 147 chr1 29401750 29401895 -252791769 - AluJo SINE Alu -7 295 179 2152 113 0 3 chr1 29401895 29402197 -252791467 - AluSq SINE Alu -12 301 1 1095 153 83 147 chr1 29402197 29402365 -252791299 - AluJo SINE Alu -123 179 2 1205 162 43 5 chr1 29402377 29402587 -252791077 - AluJb SINE Alu -10 302 85 2114 119 18 6 chr1 29402628 29402971 -252790693 + MER47A DNA MER2_type 20 366 0 223 309 95 16 chr1 29403193 29403319 -252790345 - L2 LINE L2 -212 3060 2925 699 197 0 8 chr1 29403365 29403482 -252790182 + FLAM_C SINE Alu 2 117 -26 26 30 0 0 chr1 29403487 29403520 -252790144 + AT_rich Low_complexity Low_complexity 1 33 0 2216 104 0 0 chr1 29403520 29403817 -252789847 + AluSc SINE Alu 1 297 -12 181 204 45 0 chr1 29403846 29403890 -252789774 - MIR SINE MIR -48 214 169 779 177 0 0 chr1 29404939 29405063 -252788601 - FLAM_A SINE Alu -6 127 4 586 246 62 26 chr1 29405066 29405235 -252788429 - MER113 DNA MER1_type? -205 316 155 2079 103 0 10 chr1 29405235 29405525 -252788139 + AluSc SINE Alu 1 287 -22 586 246 62 26 chr1 29405525 29405550 -252788114 - MER113 DNA MER1_type? -366 155 132 2116 101 10 0 chr1 29405550 29405838 -252787826 + AluSx SINE Alu 1 291 -21 586 246 62 26 chr1 29405838 29405914 -252787750 - MER113 DNA MER1_type? -389 132 35 2163 90 7 0 chr1 29406087 29406377 -252787287 - AluSg SINE Alu -18 292 1 2087 112 0 7 chr1 29407613 29407918 -252785746 + AluSq SINE Alu 1 303 -10 829 168 14 7 chr1 29408184 29408327 -252785337 + FRAM SINE Alu 21 164 -12 544 278 87 50 chr1 29408329 29408628 -252785036 - L1ME LINE L1 -302 5819 5510 1493 143 103 0 chr1 29409616 29409868 -252783796 - AluJb SINE Alu -20 292 15 2818 12 0 3 chr1 29410062 29410381 -252783283 + AluYb8 SINE Alu 1 318 0 863 129 30 0 chr1 29410436 29410568 -252783096 - AluJo SINE Alu -176 136 1 1994 123 0 13 chr1 29410800 29411101 -252782563 - AluSg SINE Alu -13 297 1 2321 82 0 19 chr1 29411113 29411430 -252782234 - AluY SINE Alu 0 311 1 2100 127 3 3 chr1 29411847 29412155 -252781509 - AluSx SINE Alu -4 308 1 1280 109 0 0 chr1 29412231 29412406 -252781258 - AluSq SINE Alu -5 308 134 1955 132 3 13 chr1 29412406 29412716 -252780948 - AluSq SINE Alu -6 307 1 2045 103 21 0 chr1 29412898 29413189 -252780475 + AluSx SINE Alu 1 297 -15 2081 118 3 3 chr1 29413201 29413497 -252780167 + AluSx SINE Alu 1 296 -16 383 271 119 40 chr1 29413498 29413649 -252780015 + MIR SINE MIR 25 187 -75 225 0 0 0 chr1 29413799 29413824 -252779840 + (GA)n Simple_repeat Simple_repeat 2 26 0 825 151 0 0 chr1 29414264 29414383 -252779281 + FLAM_C SINE Alu 2 120 -23 2076 92 0 10 chr1 29414387 29414679 -252778985 - AluY SINE Alu -18 293 5 2199 56 0 11 chr1 29414682 29415007 -252778657 - AluY SINE Alu 0 322 1 2045 128 3 3 chr1 29415007 29415313 -252778351 - AluSx SINE Alu -6 306 1 1817 132 28 60 chr1 29415491 29415810 -252777854 + AluJb SINE Alu 3 311 -1 555 16 0 0 chr1 29415818 29415882 -252777782 + (GA)n Simple_repeat Simple_repeat 1 64 0 1445 137 116 21 chr1 29416579 29416864 -252776800 + AluJb SINE Alu 1 312 0 2203 85 0 7 chr1 29416866 29417161 -252776503 + AluSg SINE Alu 1 293 -17 2588 32 3 0 chr1 29417163 29417473 -252776191 + AluY SINE Alu 1 311 0 1097 130 27 0 chr1 29417476 29417661 -252776003 + AluJo SINE Alu 117 306 -6 2202 84 3 7 chr1 29417663 29417959 -252775705 + AluSx SINE Alu 3 297 -15 385 250 154 22 chr1 29417991 29418127 -252775537 - MIR SINE MIR -80 182 29 2249 66 0 23 chr1 29418132 29418435 -252775229 - AluY SINE Alu -15 296 1 400 244 11 0 chr1 29418465 29418555 -252775109 - MIR3 SINE MIR -49 159 69 21 0 0 0 chr1 29418640 29418661 -252775003 + GC_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr1 29419765 29419800 -252773864 + (CA)n Simple_repeat Simple_repeat 1 35 0 266 324 99 14 chr1 29421447 29421589 -252772075 - MIR SINE MIR -35 227 74 921 126 0 22 chr1 29422251 29422386 -252771278 - FLAM_C SINE Alu -1 132 1 1717 169 30 7 chr1 29422963 29423265 -252770399 - AluJb SINE Alu -3 309 1 2268 92 0 0 chr1 29423309 29423612 -252770052 + AluY SINE Alu 1 303 -8 359 211 316 13 chr1 29423657 29423809 -252769855 + MIR SINE MIR 31 228 -34 2117 116 0 31 chr1 29423813 29424131 -252769533 - AluSq SINE Alu -5 308 1 1759 80 27 0 chr1 29424384 29424608 -252769056 + MER30 DNA MER1_type 1 230 0 376 303 114 0 chr1 29425221 29425353 -252768311 + L3b LINE CR1 1240 1386 -197 25 0 0 0 chr1 29425491 29425516 -252768148 + AT_rich Low_complexity Low_complexity 1 25 0 344 104 0 0 chr1 29425519 29425567 -252768097 - MER66A LTR ERV1 -144 334 287 608 264 81 0 chr1 29425680 29425854 -252767810 + MIR3 SINE MIR 20 207 -1 357 265 92 24 chr1 29425912 29426066 -252767598 + MIR SINE MIR 23 192 -67 180 152 0 0 chr1 29429259 29429292 -252764372 + (CA)n Simple_repeat Simple_repeat 1 33 0 418 292 50 12 chr1 29431660 29431829 -252761835 + MIR SINE MIR 23 194 -62 250 237 92 13 chr1 29431861 29431937 -252761727 - MER103 DNA DNA -77 89 8 186 255 0 0 chr1 29432427 29432474 -252761190 + MIR SINE MIR 45 91 -171 591 296 40 74 chr1 29433969 29434320 -252759344 + L2 LINE L2 2921 3259 -13 2112 107 3 3 chr1 29435802 29436100 -252757564 - AluSx SINE Alu -14 298 1 693 281 55 85 chr1 29436110 29436285 -252757379 + L1MC5 LINE L1 7312 7491 -470 942 205 0 0 chr1 29436285 29436451 -252757213 + FRAM SINE Alu 1 166 0 693 281 55 85 chr1 29436451 29436619 -252757045 + L1MC5 LINE L1 7491 7663 -298 1772 155 3 23 chr1 29436619 29436923 -252756741 + AluJo SINE Alu 1 298 -14 693 281 55 85 chr1 29436923 29436936 -252756728 + L1MC5 LINE L1 7663 7675 -286 2284 81 0 0 chr1 29436936 29437231 -252756433 + AluY SINE Alu 1 295 -16 693 281 55 85 chr1 29437231 29437506 -252756158 + L1MC5 LINE L1 7675 7926 -35 2401 56 20 3 chr1 29437510 29437816 -252755848 + AluY SINE Alu 1 311 0 238 174 0 61 chr1 29437817 29437915 -252755749 - L1MC4 LINE L1 -1337 6705 6614 344 256 21 10 chr1 29437917 29438013 -252755651 + L1MC3 LINE L1 6571 6646 -1139 * 345 182 45 0 chr1 29437954 29438020 -252755644 - L1MCa LINE L1 -4362 2064 1996 708 191 58 12 chr1 29438028 29438201 -252755463 + L1ME3A LINE L1 4477 4657 -1489 992 179 0 0 chr1 29438203 29438371 -252755293 + FRAM SINE Alu 1 166 -10 328 313 0 0 chr1 29438381 29438464 -252755200 + L1ME3A LINE L1 5119 5201 -945 2266 100 7 0 chr1 29438498 29438808 -252754856 + AluSx SINE Alu 1 312 0 2670 242 74 43 chr1 29438809 29438906 -252754758 + L1ME3A LINE L1 5191 5284 -886 2196 103 0 13 chr1 29438906 29439217 -252754447 + AluSx SINE Alu 1 307 -5 2670 242 74 43 chr1 29439217 29439792 -252753872 + L1ME3A LINE L1 5284 5840 -330 2219 106 3 0 chr1 29439792 29440094 -252753570 + AluSx SINE Alu 1 303 -9 2670 242 74 43 chr1 29440094 29440331 -252753333 + L1ME3A LINE L1 5840 6121 -49 2092 113 0 3 chr1 29440331 29440624 -252753040 - AluSx SINE Alu -20 292 1 2670 242 74 43 chr1 29440624 29440676 -252752988 + L1ME3A LINE L1 6121 6170 0 2226 109 6 0 chr1 29440690 29441001 -252752663 + AluSq SINE Alu 1 313 0 376 215 0 13 chr1 29441274 29441353 -252752311 - L2 LINE L2 -9 3304 3227 395 297 22 87 chr1 29441470 29441655 -252752009 + MIR SINE MIR 14 186 -22 512 247 120 13 chr1 29441692 29441842 -252751822 + MIR SINE MIR 97 262 0 711 186 0 0 chr1 29441855 29441968 -252751696 + AluJo/FLAM SINE Alu 2 114 -198 2213 104 3 3 chr1 29441968 29442277 -252751387 - AluSg SINE Alu -1 309 1 382 235 39 10 chr1 29442278 29442380 -252751284 + MIR SINE MIR 118 222 -40 336 333 0 32 chr1 29442569 29442695 -252750969 + MIR SINE MIR 22 143 -119 861 142 0 58 chr1 29442697 29442852 -252750812 + AluJo SINE Alu 1 146 -166 2051 99 7 14 chr1 29442852 29443135 -252750529 + AluSq SINE Alu 1 281 -32 304 213 49 0 chr1 29443149 29443210 -252750454 + AluSg/x SINE Alu 129 192 -110 562 187 0 28 chr1 29443280 29443387 -252750277 + FRAM SINE Alu 67 170 -6 2212 87 7 3 chr1 29443389 29443687 -252749977 + AluSx SINE Alu 1 299 -13 275 342 34 17 chr1 29443688 29443805 -252749859 + MIR SINE MIR 144 262 0 287 250 30 20 chr1 29444288 29444388 -252749276 - MER117 DNA MER1_type -96 101 1 247 214 143 12 chr1 29444595 29444679 -252748985 - L2 LINE L2 -1 3312 3218 189 238 262 0 chr1 29444685 29444769 -252748895 + L2 LINE L2 3207 3312 -1 181 308 19 0 chr1 29445271 29445323 -252748341 - L2 LINE L2 -20 3293 3241 381 309 48 18 chr1 29445401 29445566 -252748098 + MIR SINE MIR 29 198 -64 832 153 0 36 chr1 29445689 29445826 -252747838 + FLAM_C SINE Alu 2 133 -10 2181 106 10 3 chr1 29445836 29446147 -252747517 + AluSp SINE Alu 1 313 0 315 270 122 57 chr1 29446335 29446351 -252747313 + L1MC5 LINE L1 7479 7493 -468 2165 105 0 0 chr1 29446351 29446670 -252746994 + AluSx SINE Alu 1 319 0 315 270 122 57 chr1 29446670 29446870 -252746794 + L1MC5 LINE L1 7493 7722 -239 2223 68 0 17 chr1 29446870 29447164 -252746500 - AluY SINE Alu -22 289 1 315 270 122 57 chr1 29447164 29447241 -252746423 + L1MC5 LINE L1 7722 7793 -168 2453 80 0 0 chr1 29447263 29447574 -252746090 + AluY SINE Alu 1 311 0 405 248 119 0 chr1 29448087 29448188 -252745476 + MER81 DNA DNA 2 114 0 2277 88 0 0 chr1 29448409 29448705 -252744959 - AluSc SINE Alu -8 301 6 337 296 37 0 chr1 29449764 29449872 -252743792 + MIR SINE MIR 116 227 -35 228 221 16 11 chr1 29450577 29450726 -252742938 + L2 LINE L2 2892 3081 -232 1108 196 93 45 chr1 29450739 29451071 -252742593 + L2 LINE L2 2966 3313 0 695 242 130 9 chr1 29451072 29451287 -252742377 + MIR SINE MIR 3 243 -19 208 263 162 50 chr1 29451339 29451438 -252742226 + L2 LINE L2 3156 3265 -48 304 250 115 0 chr1 29451894 29451998 -252741666 - MER117 DNA MER1_type -32 165 50 189 107 0 0 chr1 29452033 29452061 -252741603 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 530 308 81 31 chr1 29452062 29452322 -252741342 - L2 LINE L2 -10 3262 2990 861 297 185 27 chr1 29452579 29453049 -252740615 + L2 LINE L2 2636 3214 -99 2100 104 3 7 chr1 29453049 29453375 -252740289 + AluSq SINE Alu 1 313 0 861 297 185 27 chr1 29453375 29453481 -252740183 + L2 LINE L2 3214 3302 -11 266 211 0 0 chr1 29453492 29453544 -252740120 - MIR SINE MIR 0 262 211 761 291 66 0 chr1 29453668 29453881 -252739783 - MIR SINE MIR -31 231 5 566 291 155 7 chr1 29454400 29454671 -252738993 - L2 LINE L2 0 3313 3003 217 253 137 0 chr1 29454781 29454876 -252738788 - L2 LINE L2 -599 2715 2608 801 231 71 5 chr1 29455644 29455856 -252737808 - MIR SINE MIR -32 230 5 180 111 0 0 chr1 29457155 29457182 -252736482 + (CTG)n Simple_repeat Simple_repeat 2 28 0 237 125 29 77 chr1 29457185 29457289 -252736375 + (CGGGG)n Simple_repeat Simple_repeat 3 101 0 27 49 0 0 chr1 29457333 29457374 -252736290 + GC_rich Low_complexity Low_complexity 1 41 0 206 157 43 29 chr1 29457452 29457522 -252736142 + (CCG)n Simple_repeat Simple_repeat 2 72 0 235 270 16 16 chr1 29457674 29457737 -252735927 - L2 LINE L2 -18 3254 3192 2058 187 59 119 chr1 29458034 29458098 -252735566 - MLT1E LTR MaLR -1 592 526 2172 78 20 3 chr1 29458098 29458391 -252735273 + AluSc SINE Alu 1 298 -11 2058 187 59 119 chr1 29458391 29458956 -252734708 - MLT1E LTR MaLR -67 526 1 2318 103 0 0 chr1 29459460 29459770 -252733894 - AluSq SINE Alu -3 310 1 1847 152 10 7 chr1 29459919 29460221 -252733443 + AluJo SINE Alu 1 303 -9 2133 85 23 23 chr1 29460221 29460526 -252733138 + AluSg SINE Alu 1 306 -4 625 200 0 0 chr1 29460621 29460731 -252732933 + AluJ SINE Alu 2 111 -201 1034 276 109 6 chr1 29460856 29461204 -252732460 + MLT1J2 LTR MaLR 67 450 0 418 132 40 0 chr1 29461493 29461569 -252732095 - LTR50 LTR ERVL 0 795 717 2164 114 0 3 chr1 29461569 29461868 -252731796 + AluSg SINE Alu 1 298 -12 1340 138 0 50 chr1 29461875 29462114 -252731550 + AluJb SINE Alu 86 312 0 28 48 0 0 chr1 29462146 29462188 -252731476 + AT_rich Low_complexity Low_complexity 1 42 0 1165 159 0 66 chr1 29462193 29462340 -252731324 + AluJo SINE Alu 1 129 -183 2401 71 0 0 chr1 29462340 29462636 -252731028 + AluY SINE Alu 1 296 -15 1165 159 0 66 chr1 29462636 29462714 -252730950 + AluJo SINE Alu 129 211 -101 521 152 48 0 chr1 29462726 29462831 -252730833 - LTR50 LTR ERVL -144 651 542 876 200 0 6 chr1 29462868 29463038 -252730626 - FAM SINE Alu -9 40 1 847 219 157 7 chr1 29463047 29463369 -252730295 - LTR50 LTR ERVL -389 406 18 1842 137 31 0 chr1 29463424 29463716 -252729948 - AluSg SINE Alu -9 301 1 1798 135 0 49 chr1 29463849 29464007 -252729657 - AluSx SINE Alu -23 289 125 2078 92 14 0 chr1 29464007 29464288 -252729376 - AluSg SINE Alu -15 295 11 2228 94 3 0 chr1 29464296 29464594 -252729070 - AluSx SINE Alu -13 299 1 1798 135 0 49 chr1 29464594 29464730 -252728934 - AluSx SINE Alu -194 118 1 2709 94 10 108 chr1 29464789 29465471 -252728193 - SVA Other Other -339 1047 433 2624 84 23 77 chr1 29465488 29466657 -252727007 - SVA Other Other -518 868 393 305 289 19 48 chr1 29467002 29467106 -252726558 - L1MC4 LINE L1 -1334 6708 6608 890 130 30 0 chr1 29467106 29467237 -252726427 - AluJb SINE Alu -177 135 1 2069 103 21 0 chr1 29467249 29467539 -252726125 - AluSx SINE Alu -16 296 1 313 369 0 0 chr1 29467680 29467802 -252725862 - HERVL LTR ERVL -2961 2693 2572 270 179 0 0 chr1 29467802 29467858 -252725806 + C-rich Low_complexity Low_complexity 1 56 0 358 204 20 10 chr1 29467859 29467957 -252725707 + CT-rich Low_complexity Low_complexity 4 102 0 2219 102 0 16 chr1 29467960 29468274 -252725390 - AluSg SINE Alu -1 309 1 2064 89 45 0 chr1 29468274 29468566 -252725098 - AluSp SINE Alu -6 307 3 756 253 11 5 chr1 29468652 29468708 -252724956 - HERVL LTR ERVL -3250 2514 2460 1876 154 3 0 chr1 29468708 29469000 -252724664 - AluJo SINE Alu -19 293 1 1798 154 0 17 chr1 29469002 29469294 -252724370 - 7SLRNA srpRNA srpRNA -10 310 24 756 253 11 5 chr1 29469294 29469424 -252724240 - HERVL LTR ERVL -3304 2460 2324 1244 169 143 90 chr1 29469426 29469657 -252724007 - MLT1B LTR MaLR -1 389 172 2188 110 0 16 chr1 29469657 29469834 -252723830 - AluSq SINE Alu 0 313 135 188 35 35 0 chr1 29469834 29469863 -252723801 + (TA)n Simple_repeat Simple_repeat 1 30 0 2260 78 0 0 chr1 29469864 29470157 -252723507 - AluY SINE Alu -18 293 1 2188 110 0 16 chr1 29470157 29470295 -252723369 - AluSq SINE Alu -177 136 1 1244 169 143 90 chr1 29470295 29470435 -252723229 - MLT1B LTR MaLR -218 172 1 1452 275 11 7 chr1 29470436 29470964 -252722700 - HERVL LTR ERVL -3438 2326 1705 1449 356 27 36 chr1 29470993 29471371 -252722293 - HERVL LTR ERVL -4174 1590 1210 1663 156 32 41 chr1 29471371 29471516 -252722148 + AluJb SINE Alu 1 146 -166 2154 107 7 0 chr1 29471516 29471816 -252721848 + AluSq SINE Alu 1 302 -11 1663 156 32 41 chr1 29471816 29471985 -252721679 + AluJb SINE Alu 146 312 0 1449 356 27 36 chr1 29471985 29472430 -252721234 - HERVL LTR ERVL -4554 1210 775 2413 228 161 10 chr1 29473060 29473571 -252720093 - LTR50 LTR ERVL 0 795 152 2232 88 0 3 chr1 29473571 29473865 -252719799 + AluSq SINE Alu 1 293 -20 2413 228 161 10 chr1 29473865 29474043 -252719621 - LTR50 LTR ERVL -643 152 2 2417 71 0 0 chr1 29474053 29474363 -252719301 - AluSg SINE Alu 0 310 1 1886 141 3 25 chr1 29474541 29474860 -252718804 + AluJb SINE Alu 1 312 0 1943 152 0 7 chr1 29474892 29475194 -252718470 - AluSx SINE Alu -12 300 1 1109 151 0 0 chr1 29475257 29475423 -252718241 + AluJb SINE Alu 144 309 -3 4372 158 41 24 chr1 29475423 29476104 -252717560 + L1MB3 LINE L1 5027 5695 -488 2402 62 0 31 chr1 29476104 29476424 -252717240 + AluY SINE Alu 1 310 -1 4372 158 41 24 chr1 29476424 29476655 -252717009 + L1MB3 LINE L1 5695 5921 -262 2078 122 0 3 chr1 29476655 29476951 -252716713 + AluSx SINE Alu 1 295 -17 4372 158 41 24 chr1 29476951 29477059 -252716605 + L1MB3 LINE L1 5921 6168 -15 804 194 0 70 chr1 29477251 29477437 -252716227 + FRAM SINE Alu 1 172 -4 2043 98 21 7 chr1 29477496 29477809 -252715855 + AluSg SINE Alu 1 310 0 1815 145 3 60 chr1 29477837 29478168 -252715496 + AluJo SINE Alu 1 312 0 535 189 72 85 chr1 29478555 29478602 -252715062 + MLT1J1 LTR MaLR 31 77 -369 891 188 39 0 chr1 29478602 29478783 -252714881 + MER53 DNA DNA 1 188 -1 535 189 72 85 chr1 29478783 29478888 -252714776 + MLT1J1 LTR MaLR 77 181 -265 2323 60 3 7 chr1 29478895 29479193 -252714471 + AluY SINE Alu 1 297 -14 578 0 0 47 chr1 29479196 29479282 -252714382 + (TCTCCC)n Simple_repeat Simple_repeat 2 83 0 6024 74 25 40 chr1 29479282 29481239 -252712425 + SVA Other Other 53 1386 0 556 278 82 5 chr1 29481258 29481452 -252712212 + MLT1J2 LTR MaLR 240 448 -2 1926 147 7 16 chr1 29481518 29481825 -252711839 - AluJb SINE Alu -8 304 1 431 241 213 0 chr1 29481890 29482031 -252711633 - MIR SINE MIR -1 261 91 2505 59 0 0 chr1 29482033 29482340 -252711324 - AluY SINE Alu -4 307 1 251 306 204 21 chr1 29482363 29482549 -252711115 + L2 LINE L2 2148 2367 -947 601 179 22 120 chr1 29482553 29482737 -252710927 - MIR SINE MIR -40 222 57 2479 52 0 3 chr1 29483038 29483343 -252710321 + AluSg SINE Alu 1 304 -6 283 229 60 169 chr1 29485128 29485329 -252708335 - MIR3 SINE MIR -11 197 19 27 29 0 0 chr1 29485340 29485374 -252708290 + AT_rich Low_complexity Low_complexity 1 34 0 1958 143 16 0 chr1 29485394 29485701 -252707963 - AluSx SINE Alu 0 312 1 208 321 46 113 chr1 29487445 29487664 -252706000 + L2 LINE L2 2887 3119 -153 2426 76 0 0 chr1 29487664 29487966 -252705698 + AluY SINE Alu 2 303 -8 2076 111 0 7 chr1 29487971 29488299 -252705365 + AluSx SINE Alu 1 312 0 208 321 46 113 chr1 29488299 29488395 -252705269 + L2 LINE L2 3123 3176 -96 2260 105 0 0 chr1 29488395 29488700 -252704964 - AluSg1 SINE Alu -4 305 1 208 321 46 113 chr1 29488700 29488791 -252704873 + L2 LINE L2 3176 3272 0 207 247 55 0 chr1 29490022 29490095 -252703569 - L2 LINE L2 -843 2471 2395 808 141 16 0 chr1 29490101 29490222 -252703442 + FLAM_C SINE Alu 14 136 -7 1798 151 0 24 chr1 29490224 29490516 -252703148 + AluJo SINE Alu 3 287 -25 1970 247 172 2 chr1 29490534 29491169 -252702495 - L2 LINE L2 -1171 2143 1401 229 320 0 0 chr1 29491195 29491273 -252702391 + L2 LINE L2 1316 1393 -1921 * 582 268 58 11 chr1 29491272 29491462 -252702202 - L2 LINE L2 -2592 722 524 2607 38 0 0 chr1 29491504 29491818 -252701846 + AluYb8 SINE Alu 1 314 -4 921 136 45 7 chr1 29491818 29491972 -252701692 + AluSg/x SINE Alu 134 293 -19 259 328 104 16 chr1 29491972 29492097 -252701567 + L2 LINE L2 3136 3271 -1 232 137 176 0 chr1 29492576 29492627 -252701037 - L2 LINE L2 0 3272 3213 567 269 26 47 chr1 29492932 29493125 -252700539 + MIR3 SINE MIR 20 208 0 276 300 136 36 chr1 29493646 29493786 -252699878 + MIR SINE MIR 35 188 -74 194 229 240 21 chr1 29494498 29494594 -252699070 + L2 LINE L2 3196 3312 -1 185 281 45 45 chr1 29495279 29495368 -252698296 - MIR3 SINE MIR -9 199 111 366 284 0 0 chr1 29495377 29495465 -252698199 - MIR SINE MIR -90 172 85 785 269 119 31 chr1 29498207 29498365 -252695299 + L2 LINE L2 2922 3065 -248 980 128 0 0 chr1 29498365 29498498 -252695166 - FLAM_C SINE Alu 0 133 1 785 269 119 31 chr1 29498498 29498699 -252694965 + L2 LINE L2 3065 3313 0 543 261 99 0 chr1 29498702 29498844 -252694820 - MIR3 SINE MIR -49 159 4 259 272 206 11 chr1 29498993 29499085 -252694579 - L2 LINE L2 -1 3271 3162 190 219 98 0 chr1 29499108 29499149 -252694515 + MIR SINE MIR 216 260 -2 276 252 81 54 chr1 29500578 29500689 -252692975 + MIR SINE MIR 72 185 -77 1170 258 187 37 chr1 29500925 29501823 -252691841 - L2 LINE L2 -6 3307 2242 204 67 0 0 chr1 29502941 29502971 -252690693 + (T)n Simple_repeat Simple_repeat 1 30 0 1675 149 26 78 chr1 29505816 29505853 -252687811 + AluJo SINE Alu 1 38 -264 1975 110 3 95 chr1 29505853 29506043 -252687621 - AluSx SINE Alu -16 296 147 2320 109 0 3 chr1 29506043 29506345 -252687319 - AluSx SINE Alu -11 301 1 1975 110 3 95 chr1 29506345 29506480 -252687184 - AluSx SINE Alu -165 147 1 1675 149 26 78 chr1 29506480 29506599 -252687065 + AluJo SINE Alu 38 162 -140 1704 176 13 36 chr1 29506599 29506900 -252686764 + AluJb SINE Alu 1 294 -18 1675 149 26 78 chr1 29506900 29507050 -252686614 + AluJo SINE Alu 162 292 -10 181 255 235 20 chr1 29507075 29507173 -252686491 + MIR SINE MIR 134 252 -10 296 273 186 0 chr1 29507240 29507401 -252686263 + MIR SINE MIR 70 260 -2 2447 54 14 0 chr1 29507558 29507854 -252685810 + AluY SINE Alu 1 300 -11 690 126 134 17 chr1 29507995 29508114 -252685550 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr1 29510416 29510440 -252683224 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2301 101 0 26 chr1 29513347 29513655 -252680009 - AluSx SINE Alu -12 300 1 2135 123 3 0 chr1 29513907 29514199 -252679465 - AluSx SINE Alu -19 293 1 214 276 82 31 chr1 29514502 29514600 -252679064 - L2 LINE L2 -182 3090 2988 446 271 59 35 chr1 29515673 29515843 -252677821 - MIR SINE MIR -87 175 2 384 253 70 57 chr1 29516575 29516733 -252676931 - MIR SINE MIR -91 171 12 962 206 0 6 chr1 29518064 29518239 -252675425 - FRAM SINE Alu -5 171 1 2353 106 3 0 chr1 29518247 29518548 -252675116 - AluSp SINE Alu -11 302 1 2496 61 0 7 chr1 29518629 29518926 -252674738 - AluY SINE Alu -16 295 1 2161 97 17 3 chr1 29518928 29519216 -252674448 - AluSq SINE Alu -21 292 1 1181 162 0 75 chr1 29519815 29519866 -252673798 + AluJb SINE Alu 87 140 -172 1754 156 19 0 chr1 29519866 29520135 -252673529 + AluSx SINE Alu 1 274 -38 182 61 0 30 chr1 29520141 29520174 -252673490 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1181 162 0 75 chr1 29520174 29520343 -252673321 + AluJb SINE Alu 145 297 -15 2111 100 14 0 chr1 29520359 29520640 -252673024 - AluSg SINE Alu -25 285 1 27 0 0 0 chr1 29521492 29521519 -252672145 + AT_rich Low_complexity Low_complexity 1 27 0 211 250 97 14 chr1 29521572 29521644 -252672020 - MIR SINE MIR -115 147 70 730 151 14 22 chr1 29522391 29522530 -252671134 + L1MA5A LINE L1 6156 6293 -4 21 0 0 0 chr1 29523412 29523433 -252670231 + AT_rich Low_complexity Low_complexity 1 21 0 2366 65 10 3 chr1 29523433 29523725 -252669939 - AluSp SINE Alu -19 294 1 494 228 59 7 chr1 29523752 29523888 -252669776 - MER58B DNA MER1_type -8 333 191 1893 164 0 16 chr1 29524623 29524940 -252668724 + AluJb SINE Alu 1 312 0 1442 161 12 116 chr1 29525492 29525828 -252667836 - AluJb SINE Alu -1 301 1 1826 112 109 4 chr1 29526193 29526460 -252667204 + AluSg SINE Alu 1 295 -15 2021 76 8 11 chr1 29526634 29526898 -252666766 - AluY SINE Alu -3 308 46 1081 101 0 0 chr1 29526899 29527038 -252666626 - AluSg/x SINE Alu -13 297 159 2505 74 0 0 chr1 29527129 29527428 -252666236 + AluY SINE Alu 1 299 -12 2292 102 0 29 chr1 29527544 29527857 -252665807 - AluSx SINE Alu -8 304 1 955 133 0 7 chr1 29527858 29528001 -252665663 - AluJo SINE Alu -170 142 1 202 83 0 42 chr1 29528038 29528086 -252665578 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 2507 75 0 0 chr1 29528088 29528395 -252665269 + AluY SINE Alu 1 307 -4 399 311 115 57 chr1 29528904 29528999 -252664665 - MIR SINE MIR -4 258 170 1750 153 51 10 chr1 29528999 29529294 -252664370 - AluJb SINE Alu -5 307 1 399 311 115 57 chr1 29529294 29529442 -252664222 - MIR SINE MIR -92 170 1 356 261 101 29 chr1 29529455 29529593 -252664071 + MIR3 SINE MIR 13 160 -48 2067 83 0 4 chr1 29530024 29530277 -252663387 + AluY SINE Alu 1 252 -59 460 219 171 0 chr1 29532507 29532630 -252661034 - MIR SINE MIR -70 192 49 2396 82 0 0 chr1 29532867 29533158 -252660506 - AluSx SINE Alu -21 291 1 2506 66 0 3 chr1 29534945 29535248 -252658416 - AluY SINE Alu -9 302 1 21 0 0 0 chr1 29535259 29535280 -252658384 + AT_rich Low_complexity Low_complexity 1 21 0 245 246 49 0 chr1 29535332 29535393 -252658271 + MER102b DNA MER1_type 249 312 -29 186 43 0 0 chr1 29535502 29535525 -252658139 + (A)n Simple_repeat Simple_repeat 1 23 0 1884 144 0 23 chr1 29536265 29536570 -252657094 - AluJo SINE Alu -14 298 1 2111 105 19 32 chr1 29537061 29537376 -252656288 - AluSx SINE Alu -1 311 1 1028 119 14 0 chr1 29537376 29537519 -252656145 - AluY SINE Alu -166 145 1 2351 102 3 7 chr1 29538058 29538363 -252655301 - AluSp SINE Alu -9 304 1 347 235 66 11 chr1 29538451 29538543 -252655121 + MIR3 SINE MIR 56 154 -54 24 0 0 0 chr1 29540321 29540345 -252653319 + AT_rich Low_complexity Low_complexity 1 24 0 1632 95 22 5 chr1 29540355 29540577 -252653087 - AluSq SINE Alu -87 226 1 2244 107 7 3 chr1 29541143 29541442 -252652222 - AluSg SINE Alu -10 300 1 499 236 0 0 chr1 29541547 29541636 -252652028 - MER5A DNA MER1_type -87 102 14 276 334 161 21 chr1 29542869 29543297 -252650367 + L2 LINE L2 2007 2494 -820 273 294 84 28 chr1 29543865 29544008 -252649656 - L3 LINE CR1 -4 1573 1423 298 390 6 6 chr1 29544137 29544301 -252649363 - L2 LINE L2 -609 2705 2542 680 219 131 12 chr1 29544658 29544818 -252648846 + MER5A DNA MER1_type 10 188 -1 2254 75 12 56 chr1 29544944 29545264 -252648400 + AluSg1 SINE Alu 1 306 -3 466 97 0 0 chr1 29545272 29545334 -252648330 + Alu SINE Alu 1 62 -256 451 131 0 0 chr1 29745334 29745395 -252448269 - AluS SINE Alu -256 62 2 1782 147 3 7 chr1 29745433 29745719 -252447945 - AluJb SINE Alu -27 285 1 2231 95 0 7 chr1 29745853 29746157 -252447507 - AluSq SINE Alu -11 302 1 1320 161 10 77 chr1 29746251 29746286 -252447378 + AluJo SINE Alu 32 68 -244 2222 82 3 0 chr1 29746286 29746580 -252447084 - AluY SINE Alu -16 295 1 1320 161 10 77 chr1 29746580 29746842 -252446822 + AluJo SINE Alu 68 309 -3 841 240 19 96 chr1 29747243 29747352 -252446312 + MIR SINE MIR 13 129 -133 1931 95 78 3 chr1 29747352 29747635 -252446029 - AluSq SINE Alu -8 305 2 841 240 19 96 chr1 29747635 29747796 -252445868 + MIR SINE MIR 129 262 0 336 267 308 7 chr1 29747935 29748081 -252445583 + MIR SINE MIR 61 250 -12 246 289 252 0 chr1 29748144 29748279 -252445385 + Charlie8 DNA MER1_type 1 169 -2248 2146 71 4 0 chr1 29748279 29748560 -252445104 + AluSp SINE Alu 2 283 -30 1913 116 0 17 chr1 29748562 29748855 -252444809 + AluJb SINE Alu 1 288 -24 2232 58 0 64 chr1 29748868 29749125 -252444539 - AluY SINE Alu 0 366 136 2412 54 0 10 chr1 29749125 29749439 -252444225 - AluY SINE Alu 0 311 1 2232 58 0 64 chr1 29749439 29749564 -252444100 - AluY SINE Alu -230 136 5 1931 109 6 32 chr1 29749576 29749887 -252443777 - AluSx SINE Alu -9 303 1 415 295 11 56 chr1 29750143 29750631 -252443033 + GA-rich Low_complexity Low_complexity 1 466 0 2225 89 0 10 chr1 29750795 29751124 -252442540 + AluSx SINE Alu 1 312 0 385 333 77 13 chr1 29751176 29751410 -252442254 - L2 LINE L2 -188 3084 2836 390 319 79 55 chr1 29751962 29752081 -252441583 - L2 LINE L2 -33 3239 3124 2065 117 0 13 chr1 29752081 29752397 -252441267 + AluSx SINE Alu 1 312 0 390 319 79 55 chr1 29752397 29752531 -252441133 - L2 LINE L2 -148 3124 2980 2154 109 0 6 chr1 29752538 29752850 -252440814 + AluSx SINE Alu 1 310 -2 1072 138 0 0 chr1 29752869 29753028 -252440636 + AluSg/x SINE Alu 120 278 -34 201 39 0 0 chr1 29753028 29753054 -252440610 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr1 29753053 29753083 -252440581 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 250 23 0 chr1 29753112 29753156 -252440508 - L2 LINE L2 -339 2974 2930 465 275 119 38 chr1 29753156 29753316 -252440348 - MIR SINE MIR -78 184 12 301 211 0 0 chr1 29753537 29753589 -252440075 - L2 LINE L2 -8 3264 3213 180 309 0 0 chr1 29753747 29753789 -252439875 - MIR SINE MIR -18 244 203 1772 126 7 40 chr1 29753813 29754115 -252439549 + AluSx SINE Alu 1 292 -20 313 248 54 94 chr1 29754122 29754271 -252439393 - MIR SINE MIR -1 261 119 2220 90 3 3 chr1 29754290 29754590 -252439074 - AluSx SINE Alu -12 300 1 30 0 0 0 chr1 29754892 29754922 -252438742 + AT_rich Low_complexity Low_complexity 1 30 0 2016 88 28 3 chr1 29754922 29755207 -252438457 + AluSq SINE Alu 1 292 -21 1667 226 58 66 chr1 29755210 29755531 -252438133 + HAL1 LINE L1 1269 1586 -921 2435 43 20 0 chr1 29755531 29755836 -252437828 + AluY SINE Alu 1 311 0 1667 226 58 66 chr1 29755836 29756062 -252437602 + HAL1 LINE L1 1586 1812 -695 2056 119 0 0 chr1 29756065 29756360 -252437304 + AluY SINE Alu 1 295 -16 2013 92 32 3 chr1 29756360 29756643 -252437021 + AluSg SINE Alu 1 291 -19 319 291 68 0 chr1 29756773 29756876 -252436788 + L1MC5 LINE L1 7487 7596 -365 2027 99 0 24 chr1 29756889 29757182 -252436482 + AluSp SINE Alu 9 294 -19 1131 182 5 5 chr1 29757248 29757457 -252436207 + AluJ SINE Alu 1 209 -103 1627 97 0 29 chr1 29757519 29757757 -252435907 - AluSp SINE Alu -19 294 64 491 149 0 0 chr1 29757757 29757831 -252435833 + AluJ SINE Alu 211 284 -28 2388 63 10 3 chr1 29757869 29758172 -252435492 + AluSp SINE Alu 1 305 -8 648 123 8 41 chr1 29758232 29758354 -252435310 - AluJb SINE Alu -178 134 17 1858 148 16 7 chr1 29758455 29758758 -252434906 - AluJo SINE Alu -6 306 1 745 161 48 0 chr1 29758758 29758882 -252434782 - AluJo/FLAM SINE Alu -172 130 1 23 33 0 0 chr1 29758888 29758918 -252434746 + AT_rich Low_complexity Low_complexity 1 30 0 666 111 0 0 chr1 29758921 29759011 -252434653 - AluSx SINE Alu -29 281 192 1014 106 0 0 chr1 29759012 29759153 -252434511 - AluSx SINE Alu -172 141 1 983 241 50 44 chr1 29759154 29759473 -252434191 - LTR38 LTR ERV1 -74 482 162 1289 84 0 17 chr1 29759477 29759655 -252434009 - AluSg/x SINE Alu -6 306 132 822 97 35 0 chr1 29759780 29759894 -252433770 - AluSg SINE Alu -190 120 3 488 193 21 135 chr1 29759897 29760027 -252433637 - LTR38 LTR ERV1 -384 172 69 2160 113 0 0 chr1 29760027 29760329 -252433335 + AluSq SINE Alu 1 302 -11 488 193 21 135 chr1 29760329 29760390 -252433274 - LTR38 LTR ERV1 -487 69 3 335 194 0 0 chr1 29760402 29760464 -252433200 - L1ME LINE L1 -303 5818 5757 2371 76 0 3 chr1 29760467 29760771 -252432893 - AluSg1 SINE Alu -6 303 1 2033 99 3 13 chr1 29760816 29761118 -252432546 + AluSq SINE Alu 1 299 -14 665 171 9 0 chr1 29761130 29761235 -252432429 + FLAM_C SINE Alu 2 107 -36 241 293 26 52 chr1 29761365 29761481 -252432183 + MARNA DNA Mariner 462 574 -12 1826 71 0 4 chr1 29761627 29761866 -252431798 + AluSx SINE Alu 64 301 -11 1668 176 0 3 chr1 29762083 29762373 -252431291 - AluSx SINE Alu -12 300 12 751 261 21 5 chr1 29762476 29762664 -252431000 - MIR SINE MIR 0 262 72 363 260 102 39 chr1 29762668 29762795 -252430869 - L1ME4a LINE L1 -255 5866 5732 951 172 0 0 chr1 29762800 29762963 -252430701 + AluJb SINE Alu 142 304 -8 274 263 20 20 chr1 29762967 29763066 -252430598 - L1ME4a LINE L1 -379 5742 5644 2294 75 0 0 chr1 29763178 29763472 -252430192 - AluY SINE Alu -17 294 1 1488 138 27 74 chr1 29763569 29763895 -252429769 + AluSx SINE Alu 1 312 0 2308 93 0 6 chr1 29763900 29764211 -252429453 + AluSx SINE Alu 1 309 -3 185 333 58 0 chr1 29764380 29764449 -252429215 - L2 LINE L2 0 3313 3241 718 254 116 13 chr1 29764522 29764746 -252428918 - MIR SINE MIR -13 249 3 466 256 167 21 chr1 29764749 29764804 -252428860 - L2 LINE L2 -86 3227 3181 2223 107 3 0 chr1 29764804 29765112 -252428552 + AluSp SINE Alu 1 309 -4 466 256 167 21 chr1 29765112 29765143 -252428521 - L2 LINE L2 -132 3181 3156 2323 63 27 0 chr1 29765143 29765444 -252428220 + AluY SINE Alu 1 309 -2 2116 130 0 0 chr1 29765450 29765758 -252427906 + AluSx SINE Alu 1 308 -4 466 256 167 21 chr1 29765758 29765897 -252427767 - L2 LINE L2 -161 3152 2960 225 248 51 34 chr1 29765901 29766018 -252427646 + L1ME LINE L1 4549 4667 -1479 1464 215 0 13 chr1 29766039 29766337 -252427327 - AluJb SINE Alu -16 296 3 568 277 115 39 chr1 29766451 29766786 -252426878 + L1ME LINE L1 4741 5049 -1121 1938 137 0 3 chr1 29766786 29767079 -252426585 + AluSx SINE Alu 2 293 -19 568 277 115 39 chr1 29767079 29767588 -252426076 + L1ME LINE L1 5049 5626 -544 2235 99 10 0 chr1 29767592 29767894 -252425770 - AluSp SINE Alu -8 305 1 1884 133 3 20 chr1 29767894 29768195 -252425469 - AluSx SINE Alu -16 296 1 2098 119 16 0 chr1 29768281 29768584 -252425080 - AluSx SINE Alu -4 308 1 1479 169 36 26 chr1 29768587 29768895 -252424769 - AluJo SINE Alu 0 312 2 557 230 35 137 chr1 29768950 29769066 -252424598 + MIR SINE MIR 10 94 -168 1728 163 0 7 chr1 29769066 29769354 -252424310 + AluJb SINE Alu 12 297 -15 557 230 35 137 chr1 29769354 29769463 -252424201 + MIR SINE MIR 94 212 -50 2182 103 3 0 chr1 29769468 29769768 -252423896 + AluSq SINE Alu 1 301 -12 1116 129 0 0 chr1 29769770 29769933 -252423731 + AluSg/x SINE Alu 130 292 -20 23 0 0 0 chr1 29769935 29769958 -252423706 + AT_rich Low_complexity Low_complexity 1 23 0 793 104 0 2 chr1 29770070 29770321 -252423343 + AluSx SINE Alu 1 299 -10 337 290 48 3 chr1 29770449 29770595 -252423069 + MIR SINE MIR 53 248 -14 588 85 181 0 chr1 29770621 29770715 -252422949 + AluSp SINE Alu 2 112 -201 2244 79 7 0 chr1 29770715 29771020 -252422644 - AluY SINE Alu -4 307 1 1243 100 9 74 chr1 29771058 29771118 -252422546 + AluSq SINE Alu 85 147 -166 2053 44 93 0 chr1 29771118 29771388 -252422276 + AluY SINE Alu 1 295 -16 1243 100 9 74 chr1 29771388 29771556 -252422108 + AluSq SINE Alu 147 298 -15 22 80 0 0 chr1 29771654 29771704 -252421960 + AT_rich Low_complexity Low_complexity 1 50 0 2090 111 3 0 chr1 29772080 29772377 -252421287 - AluSq SINE Alu -15 298 1 2250 110 0 0 chr1 29772578 29772888 -252420776 + AluSg SINE Alu 1 310 0 393 205 36 0 chr1 29773764 29773847 -252419817 - MER113 DNA MER1_type? -229 292 207 625 143 171 0 chr1 29773848 29773953 -252419711 - FLAM_C SINE Alu -19 124 2 274 237 86 0 chr1 29773954 29774047 -252419617 - MER113 DNA MER1_type? -282 239 139 2261 73 0 3 chr1 29774052 29774339 -252419325 - AluSc SINE Alu -23 286 1 2581 265 120 29 chr1 29774410 29775492 -252418172 + L2 LINE L2 1937 3129 -184 1441 195 14 3 chr1 29775492 29775774 -252417890 - AluJo SINE Alu -14 298 14 2041 126 3 0 chr1 29775875 29776168 -252417496 + AluSx SINE Alu 1 294 -18 452 196 11 200 chr1 29776168 29776286 -252417378 + L1MB2 LINE L1 5949 6088 -80 1683 172 0 23 chr1 29776286 29776588 -252417076 + AluSx SINE Alu 1 295 -17 452 196 11 200 chr1 29776588 29776709 -252416955 + L1MB2 LINE L1 6088 6126 -42 2360 60 0 7 chr1 29776709 29777007 -252416657 - AluY SINE Alu -15 296 1 452 196 11 200 chr1 29777007 29777043 -252416621 + L1MB2 LINE L1 6126 6167 -1 204 228 167 79 chr1 29777402 29777516 -252416148 - L2 LINE L2 0 3313 3190 * 259 209 9 124 chr1 29777509 29777614 -252416050 + MIR SINE MIR 54 146 -62 2167 91 0 16 chr1 29777621 29777930 -252415734 - AluSq SINE Alu -9 304 1 350 246 91 64 chr1 29778027 29778137 -252415527 - MIR SINE MIR -61 147 35 686 121 163 28 chr1 29778160 29778301 -252415363 - FRAM SINE Alu -18 158 1 2424 42 3 7 chr1 29778330 29778637 -252415027 + AluSp SINE Alu 1 306 -7 2239 85 0 0 chr1 29779210 29779504 -252414160 + AluSx SINE Alu 1 294 -18 1885 146 0 3 chr1 29779643 29779945 -252413719 + AluJb SINE Alu 1 301 -11 946 127 0 69 chr1 29780004 29780020 -252413644 + AluSg/x SINE Alu 120 136 -176 2261 82 7 0 chr1 29780020 29780323 -252413341 + AluY SINE Alu 1 305 -6 946 127 0 69 chr1 29780323 29780479 -252413185 + AluSg/x SINE Alu 136 280 -32 441 263 171 44 chr1 29780584 29780835 -252412829 - L2 LINE L2 -905 2409 2127 717 260 42 10 chr1 29781176 29781368 -252412296 + MIR SINE MIR 49 246 -16 182 61 0 30 chr1 29781369 29781402 -252412262 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 819 144 0 16 chr1 29781404 29781529 -252412135 - FLAM_C SINE Alu -9 124 2 2311 61 24 0 chr1 29781561 29781854 -252411810 - AluY SINE Alu -11 300 1 1130 68 7 0 chr1 29781854 29782001 -252411663 - AluSg/x SINE Alu -11 299 152 321 344 0 0 chr1 29782153 29782246 -252411418 + L1MC4 LINE L1 6614 6706 -1336 * 377 276 0 41 chr1 29782183 29782281 -252411383 - L1MC4 LINE L1 -1339 6703 6610 1999 102 4 0 chr1 29782282 29782556 -252411108 - AluSx SINE Alu -37 275 1 805 148 0 0 chr1 29782562 29782690 -252410974 - FLAM_C SINE Alu -4 139 12 514 135 98 55 chr1 29782707 29782789 -252410875 + Charlie5 DNA MER1_type 2455 2532 -92 1998 128 0 7 chr1 29782789 29783116 -252410548 - AluSx SINE Alu 0 312 1 514 135 98 55 chr1 29783116 29783140 -252410524 + Charlie5 DNA MER1_type 2532 2554 -70 1416 166 40 22 chr1 29783140 29783447 -252410217 - AluSx SINE Alu 0 312 1 514 135 98 55 chr1 29783447 29783500 -252410164 + Charlie5 DNA MER1_type 2554 2624 0 258 191 83 60 chr1 29783663 29783747 -252409917 + L3 LINE CR1 1179 1264 -313 403 215 237 7 chr1 29783817 29783952 -252409712 - MIR SINE MIR -66 196 31 1221 219 72 7 chr1 29783983 29784275 -252409389 - MLT1A1 LTR MaLR -11 354 44 265 188 21 0 chr1 29784343 29784391 -252409273 - MLT1A1 LTR MaLR -325 49 1 638 285 27 5 chr1 29784399 29784585 -252409079 + L3 LINE CR1 1280 1469 -108 2084 125 0 0 chr1 29784602 29784905 -252408759 + AluSx SINE Alu 1 303 -9 189 0 0 0 chr1 29785043 29785064 -252408600 + (TA)n Simple_repeat Simple_repeat 1 21 0 285 279 21 107 chr1 29785742 29785800 -252407864 - MIR SINE MIR -14 248 187 2134 110 3 3 chr1 29785800 29786100 -252407564 - AluSx SINE Alu -12 300 1 285 279 21 107 chr1 29786100 29786181 -252407483 - MIR SINE MIR -75 187 121 1774 163 10 0 chr1 29786424 29786724 -252406940 + AluJo SINE Alu 3 305 -7 319 302 8 95 chr1 29786805 29786931 -252406733 - L2 LINE L2 -27 3286 3172 800 126 0 0 chr1 29787152 29787271 -252406393 - AluSg/x SINE Alu -9 301 183 * 974 150 50 0 chr1 29787270 29787430 -252406234 - AluJb SINE Alu -8 304 137 2242 77 10 0 chr1 29787516 29787813 -252405851 + AluSp SINE Alu 1 300 -13 2255 92 3 0 chr1 29787817 29788120 -252405544 + AluSg SINE Alu 7 310 0 530 172 66 0 chr1 29788120 29788242 -252405422 + L1ME2 LINE L1 5729 5858 -306 935 164 0 0 chr1 29788243 29788395 -252405269 + FRAM SINE Alu 1 151 -25 1063 207 6 78 chr1 29788399 29788671 -252404993 + L1ME2 LINE L1 5860 6107 -57 2192 116 0 0 chr1 29788671 29788981 -252404683 - AluSq SINE Alu -3 310 1 1063 207 6 78 chr1 29788981 29789027 -252404637 + L1ME2 LINE L1 6107 6155 -9 1318 157 40 95 chr1 29789114 29789248 -252404416 - AluJb SINE Alu -5 307 167 2241 98 0 16 chr1 29789248 29789565 -252404099 + AluSx SINE Alu 1 312 0 1318 157 40 95 chr1 29789565 29789755 -252403909 - AluJb SINE Alu -145 167 1 237 175 222 0 chr1 29790167 29790230 -252403434 + AluJo SINE Alu 1 77 -225 207 0 0 0 chr1 29790233 29790256 -252403408 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1884 116 0 4 chr1 29790261 29790529 -252403135 - AluSx SINE Alu -45 267 1 1480 137 4 8 chr1 29790529 29790763 -252402901 + AluJo SINE Alu 67 299 -13 1710 174 0 14 chr1 29790832 29791125 -252402539 + AluJb SINE Alu 5 293 -19 2104 71 0 52 chr1 29791128 29791270 -252402394 + AluSx SINE Alu 2 150 -162 2002 115 0 3 chr1 29791270 29791584 -252402080 + AluSq SINE Alu 1 313 0 2104 71 0 52 chr1 29791584 29791779 -252401885 + AluSx SINE Alu 150 312 0 1933 117 10 3 chr1 29791802 29792092 -252401572 + AluSx SINE Alu 1 292 -20 193 226 57 19 chr1 29792602 29792655 -252401009 - MIR SINE MIR -103 159 105 1998 52 45 4 chr1 29792690 29792959 -252400705 + AluY SINE Alu 26 305 -6 233 259 32 143 chr1 29793083 29793272 -252400392 - MIR3 SINE MIR -1 207 40 636 294 33 5 chr1 29793284 29793468 -252400196 + MIR SINE MIR 22 210 -52 182 138 35 0 chr1 29793492 29793521 -252400143 - MIR SINE MIR -116 146 117 196 275 14 58 chr1 29793862 29793931 -252399733 + L3 LINE CR1 98 163 -1414 390 307 0 60 chr1 29794029 29794179 -252399485 + MIR SINE MIR 2 142 -120 1841 169 23 13 chr1 29794185 29794492 -252399172 - AluJb SINE Alu -2 310 1 2445 86 6 10 chr1 29794617 29794931 -252398733 + AluSq SINE Alu 1 313 0 1181 38 0 0 chr1 29795018 29795149 -252398515 + AluYb8 SINE Alu 1 131 -187 2616 65 0 0 chr1 29795153 29795461 -252398203 + AluY SINE Alu 1 308 -3 754 176 26 39 chr1 29795611 29795764 -252397900 + FRAM SINE Alu 1 146 -30 2382 69 3 7 chr1 29795764 29796055 -252397609 - AluSp SINE Alu -23 290 1 2137 140 3 9 chr1 29796457 29796636 -252397028 - AluSq SINE Alu 0 313 135 2404 97 0 0 chr1 29796636 29796935 -252396729 - AluSx SINE Alu -13 299 1 2137 140 3 9 chr1 29796935 29797070 -252396594 - AluSq SINE Alu -178 135 1 2405 72 0 0 chr1 29797400 29797713 -252395951 - AluSc SINE Alu 0 313 1 1957 199 82 27 chr1 29797737 29798215 -252395449 + MLT1D LTR MaLR 2 505 0 1814 173 7 17 chr1 29798249 29798550 -252395114 - AluSq SINE Alu -13 300 3 318 179 0 0 chr1 29798563 29798619 -252395045 - AluJ/FRAM SINE Alu -15 287 232 2181 109 0 3 chr1 29798627 29798934 -252394730 - AluY SINE Alu 0 306 1 1129 150 68 14 chr1 29798968 29799260 -252394404 + L1MB8 LINE L1 5777 6178 0 2217 100 3 17 chr1 29799397 29799698 -252393966 - AluSp SINE Alu -16 297 1 1496 131 26 137 chr1 29799704 29799739 -252393925 - AluYb8 SINE Alu -6 312 275 2045 99 19 26 chr1 29799739 29800052 -252393612 + AluY SINE Alu 1 311 0 1496 131 26 137 chr1 29800052 29800367 -252393297 - AluYb8 SINE Alu -43 275 1 2335 99 3 6 chr1 29800369 29800683 -252392981 - AluSp SINE Alu 0 313 1 211 280 13 27 chr1 29800694 29800769 -252392895 - MIR SINE MIR -46 216 143 299 25 25 0 chr1 29800769 29800809 -252392855 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1106 178 5 20 chr1 29800809 29801006 -252392658 - AluJo SINE Alu -32 280 87 687 209 22 9 chr1 29801006 29801159 -252392505 - MIR SINE MIR -62 146 6 264 30 0 0 chr1 29801554 29801587 -252392077 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2358 88 0 3 chr1 29801737 29802031 -252391633 - AluSx SINE Alu -8 304 12 310 247 121 118 chr1 29802463 29802516 -252391148 + MIR SINE MIR 3 54 -208 2313 101 7 0 chr1 29802516 29802822 -252390842 + AluSq SINE Alu 1 308 -5 3229 137 16 89 chr1 29802824 29803061 -252390603 + L1MD1 LINE L1 5601 5854 -388 2044 153 0 6 chr1 29803061 29803374 -252390290 + AluJb SINE Alu 1 311 -1 3229 137 16 89 chr1 29803374 29803761 -252389903 + L1MD1 LINE L1 5854 6173 -69 1820 153 11 7 chr1 29803761 29804048 -252389616 - AluJo SINE Alu -24 288 1 3229 137 16 89 chr1 29804048 29804108 -252389556 + L1MD1 LINE L1 6173 6236 -6 310 247 121 118 chr1 29804108 29804317 -252389347 + MIR SINE MIR 54 262 0 676 165 66 26 chr1 29804433 29804582 -252389082 + L1MB5 LINE L1 5423 5565 -615 1833 115 66 17 chr1 29804582 29804869 -252388795 + AluSx SINE Alu 1 301 -11 676 165 66 26 chr1 29804869 29805205 -252388459 + L1MB5 LINE L1 5565 5886 -294 2256 126 3 0 chr1 29805205 29805515 -252388149 + AluSx SINE Alu 1 311 -1 676 165 66 26 chr1 29805515 29805639 -252388025 + L1MB5 LINE L1 5886 6004 -176 1593 179 47 0 chr1 29805639 29805918 -252387746 - AluJo SINE Alu -20 292 1 676 165 66 26 chr1 29805918 29805933 -252387731 + L1MB5 LINE L1 6004 6150 -30 926 195 0 0 chr1 29805933 29806082 -252387582 + FRAM SINE Alu 1 144 -32 389 305 17 0 chr1 29806166 29806284 -252387380 - MLT1L LTR MaLR -64 551 432 312 121 30 0 chr1 29806427 29806493 -252387171 - L1MB7 LINE L1 0 6184 6117 289 173 0 0 chr1 29806495 29806547 -252387117 + L1MA10 LINE L1 6254 6305 -29 648 198 0 60 chr1 29806555 29806722 -252386942 - L1MB8 LINE L1 -63 6115 5959 1296 133 63 133 chr1 29806722 29807039 -252386625 + AluJo SINE Alu 11 305 -7 1326 141 8 4 chr1 29807044 29807285 -252386379 - L1MB8 LINE L1 -211 5967 5726 2160 97 0 4 chr1 29807289 29807567 -252386097 - AluSx SINE Alu -15 297 21 1856 128 43 26 chr1 29807573 29807909 -252385755 - AluSx SINE Alu 0 341 1 2073 123 0 10 chr1 29807913 29808213 -252385451 - AluSg SINE Alu -12 298 2 381 250 143 7 chr1 29808214 29808354 -252385310 - MLT1L LTR MaLR -317 298 140 30 0 0 0 chr1 29808495 29808525 -252385139 + AT_rich Low_complexity Low_complexity 1 30 0 692 182 0 0 chr1 29808525 29808635 -252385029 - FLAM_A SINE Alu -23 119 10 211 211 0 0 chr1 29808659 29808711 -252384953 + T-rich Low_complexity Low_complexity 1 52 0 1474 134 79 8 chr1 29808767 29809021 -252384643 + AluJb SINE Alu 41 312 0 1003 198 42 28 chr1 29809122 29809334 -252384330 - AluJb SINE Alu -12 300 86 1737 100 0 0 chr1 29809334 29809554 -252384110 - AluJb SINE Alu -92 220 1 512 236 29 7 chr1 29809709 29809849 -252383815 - MLT1K LTR MaLR 0 588 446 2287 125 0 0 chr1 29809851 29810156 -252383508 - AluSq SINE Alu -7 306 2 180 315 108 36 chr1 29810288 29810399 -252383265 + L2 LINE L2 2940 3058 -214 2263 92 0 0 chr1 29810452 29810775 -252382889 - AluSc SINE Alu 0 323 1 196 352 45 34 chr1 29810838 29810926 -252382738 + L2 LINE L2 3137 3225 -47 438 264 16 32 chr1 29810929 29811054 -252382610 + MIR SINE MIR 65 187 -75 290 258 82 0 chr1 29811098 29811195 -252382469 - MIR SINE MIR -147 115 11 180 210 86 37 chr1 29811336 29811417 -252382247 + L2 LINE L2 2889 2973 -340 683 244 111 49 chr1 29811820 29811884 -252381780 - MIR SINE MIR -12 250 191 1061 193 63 5 chr1 29811884 29812091 -252381573 - MER20 DNA MER1_type 0 219 1 683 244 111 49 chr1 29812091 29812251 -252381413 - MIR SINE MIR -71 191 12 349 129 2 0 chr1 29812267 29812323 -252381341 + L1ME1 LINE L1 5470 5523 -643 839 159 7 40 chr1 29812325 29812476 -252381188 + AluJo SINE Alu 1 146 -166 917 186 16 0 chr1 29812485 29812673 -252380991 + L1ME1 LINE L1 5698 5888 -278 1010 197 0 5 chr1 29812673 29812861 -252380803 + AluJb SINE Alu 118 304 -8 1453 198 6 61 chr1 29812956 29813130 -252380534 - AluSp SINE Alu -14 299 117 2532 28 0 7 chr1 29813130 29813416 -252380248 - AluYb8 SINE Alu 0 318 35 2028 84 23 4 chr1 29813424 29813685 -252379979 - AluSp SINE Alu -14 299 34 1453 198 6 61 chr1 29813685 29813814 -252379850 - AluSp SINE Alu -203 110 4 344 251 145 92 chr1 29814091 29814268 -252379396 + L1ME1 LINE L1 5935 6126 -40 2191 97 7 7 chr1 29814268 29814566 -252379098 + AluSx SINE Alu 1 298 -14 344 251 145 92 chr1 29814566 29814595 -252379069 + L1ME1 LINE L1 6126 6152 -14 248 221 103 0 chr1 29814763 29814831 -252378833 + L2 LINE L2 3012 3086 -186 2041 128 21 0 chr1 29814875 29815164 -252378500 + AluSx SINE Alu 1 295 -17 34 0 0 0 chr1 29815229 29815263 -252378401 + AT_rich Low_complexity Low_complexity 1 34 0 272 225 77 115 chr1 29815268 29815428 -252378236 - MIR SINE MIR -59 203 45 212 281 181 44 chr1 29815496 29815656 -252378008 + MIR SINE MIR 67 248 -14 371 82 0 16 chr1 29815658 29815673 -252377991 + (TA)n Simple_repeat Simple_repeat 2 16 -45 2533 61 0 0 chr1 29815673 29815967 -252377697 + AluY SINE Alu 1 294 -17 371 82 0 16 chr1 29815967 29816012 -252377652 + (TA)n Simple_repeat Simple_repeat 16 61 0 1779 141 18 18 chr1 29816019 29816303 -252377361 - AluJb SINE Alu -28 284 1 301 173 107 40 chr1 29816366 29816441 -252377223 - L2 LINE L2 -11 3261 3182 183 152 61 0 chr1 29816632 29816665 -252376999 - MIR SINE MIR -56 152 118 197 299 26 134 chr1 29816789 29816807 -252376857 - MIR SINE MIR -70 192 174 2144 132 0 3 chr1 29816807 29817103 -252376561 - AluSx SINE Alu -16 296 2 197 299 26 134 chr1 29817103 29817278 -252376386 - MIR SINE MIR -88 174 20 520 262 6 49 chr1 29817448 29817612 -252376052 - L2 LINE L2 -3 3310 3154 2312 109 0 0 chr1 29817715 29818018 -252375646 + AluSx SINE Alu 1 303 -9 2292 98 0 20 chr1 29818018 29818324 -252375340 + AluSg SINE Alu 1 300 -10 2254 90 7 0 chr1 29818327 29818615 -252375049 + AluSp SINE Alu 18 307 -6 2004 122 31 3 chr1 29818616 29818904 -252374760 + AluSq SINE Alu 2 297 -16 1729 135 71 24 chr1 29818964 29819261 -252374403 + AluJo SINE Alu 1 311 -1 426 320 129 52 chr1 29819373 29819721 -252373943 + L2 LINE L2 2735 3140 -132 2084 126 27 3 chr1 29819721 29820015 -252373649 + AluSx SINE Alu 1 301 -11 426 320 129 52 chr1 29820015 29820158 -252373506 + L2 LINE L2 3140 3271 -1 2593 74 0 10 chr1 29820168 29820480 -252373184 + AluSg SINE Alu 2 310 0 222 135 37 6 chr1 29820716 29820769 -252372895 - MIR SINE MIR -90 118 63 289 261 0 0 chr1 29820887 29820956 -252372708 + MIR SINE MIR 83 151 -57 839 250 109 25 chr1 29820970 29821254 -252372410 - LTR16A LTR ERVL -23 427 120 2345 110 3 3 chr1 29821592 29821902 -252371762 + AluSx SINE Alu 3 312 0 344 320 0 0 chr1 29821921 29821999 -252371665 + L2 LINE L2 3134 3211 -61 189 327 19 0 chr1 29822044 29822096 -252371568 + MER5A DNA MER1_type 46 98 -91 2172 112 0 33 chr1 29822208 29822513 -252371151 - AluSq SINE Alu -18 295 1 1220 131 5 11 chr1 29822565 29822756 -252370908 + AluSg/x SINE Alu 120 309 -1 314 179 0 0 chr1 29822933 29822989 -252370675 - AluSq SINE Alu -7 295 240 1269 129 0 0 chr1 29822989 29823159 -252370505 - AluSq SINE Alu -143 170 1 948 60 90 8 chr1 29823171 29823304 -252370360 - AluY SINE Alu -11 300 157 260 226 108 39 chr1 29823333 29823435 -252370229 - MIR SINE MIR -42 220 112 507 267 75 19 chr1 29823447 29823608 -252370056 + MIR SINE MIR 22 191 -71 1274 70 0 120 chr1 29823610 29823810 -252369854 - AluY SINE Alu -135 176 1 1006 183 277 0 chr1 29823875 29824110 -252369554 + AluSx SINE Alu 1 300 -2 192 306 153 14 chr1 29824120 29824192 -252369472 + MIR SINE MIR 28 109 -153 555 272 82 44 chr1 29824208 29824414 -252369250 - MIR SINE MIR -27 235 22 268 282 149 29 chr1 29824354 29824528 -252369136 + MIR SINE MIR 26 220 -42 * 2133 124 0 3 chr1 29824550 29824840 -252368824 + AluSx SINE Alu 1 289 -23 364 264 72 26 chr1 29824879 29825021 -252368643 - MIR SINE MIR -62 146 2 265 204 15 15 chr1 29825226 29825295 -252368369 - MIR SINE MIR -84 124 61 203 318 58 58 chr1 29825445 29825599 -252368065 + MIR3 SINE MIR 3 156 -52 1779 98 0 5 chr1 29827859 29828083 -252365581 + AluSg SINE Alu 1 223 -87 609 192 0 0 chr1 29828158 29828262 -252365402 + FLAM_A SINE Alu 23 126 -16 1178 214 68 4 chr1 29828262 29828514 -252365150 + AluJb SINE Alu 36 303 -9 2160 118 14 0 chr1 29828523 29828819 -252364845 + AluY SINE Alu 1 300 -11 306 288 0 0 chr1 29828819 29828892 -252364772 - MIR SINE MIR -90 118 46 209 217 65 0 chr1 29828909 29828955 -252364709 - MIR SINE MIR -94 168 120 357 208 42 0 chr1 29829587 29829659 -252364005 - MIR SINE MIR -56 152 78 2423 88 0 0 chr1 29829782 29830076 -252363588 - AluSg SINE Alu -14 296 3 276 336 75 0 chr1 29830210 29830317 -252363347 - MIR SINE MIR -63 145 31 1913 149 0 42 chr1 29830850 29831159 -252362505 + AluSx SINE Alu 2 297 -15 2178 101 0 46 chr1 29831159 29831484 -252362180 + AluY SINE Alu 1 311 0 2320 117 3 0 chr1 29831486 29831794 -252361870 + AluSp SINE Alu 1 309 -4 27 29 0 0 chr1 29831852 29831886 -252361778 + AT_rich Low_complexity Low_complexity 1 34 0 1688 58 0 0 chr1 29832013 29832203 -252361461 + AluY SINE Alu 107 296 -15 2247 112 10 0 chr1 29832286 29832581 -252361083 + AluSx SINE Alu 5 302 -10 1093 186 6 0 chr1 29832999 29833182 -252360482 + AluJb SINE Alu 1 184 -128 966 125 69 0 chr1 29833182 29833326 -252360338 + AluSq SINE Alu 93 246 -67 249 33 0 0 chr1 29833330 29833360 -252360304 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2013 113 62 0 chr1 29833417 29833708 -252359956 - AluSp SINE Alu -4 309 1 2790 89 12 147 chr1 29833708 29834079 -252359585 - Tigger1 DNA MER2_type -324 2094 1675 2222 115 6 10 chr1 29834079 29834414 -252359250 + AluSq SINE Alu 1 313 0 2790 89 12 147 chr1 29834414 29834493 -252359171 - Tigger1 DNA MER2_type -743 1675 1738 1627 134 0 0 chr1 29834493 29834724 -252358940 - AluSg/x SINE Alu -1 309 79 2790 89 12 147 chr1 29834724 29834859 -252358805 - Tigger1 DNA MER2_type -679 1739 1587 2316 104 3 0 chr1 29834860 29835158 -252358506 - AluSx SINE Alu -13 299 1 4442 115 8 39 chr1 29835158 29835325 -252358339 - Tigger1 DNA MER2_type -1207 1211 1040 2249 105 3 7 chr1 29835325 29835629 -252358035 - AluSc SINE Alu -6 303 1 4442 115 8 39 chr1 29835629 29836098 -252357566 - Tigger1 DNA MER2_type -1378 1040 558 2922 10 0 0 chr1 29836098 29836408 -252357256 + AluYb8 SINE Alu 1 310 -8 2379 78 14 3 chr1 29836416 29836712 -252356952 + AluSg SINE Alu 1 299 -11 4442 115 8 39 chr1 29836712 29836841 -252356823 - Tigger1 DNA MER2_type -1867 551 460 1600 142 3 115 chr1 29836843 29836977 -252356687 + AluJo SINE Alu 2 149 -153 2170 93 0 59 chr1 29836977 29837299 -252356365 + AluSg SINE Alu 1 303 -7 1600 142 3 115 chr1 29837299 29837411 -252356253 + AluJo SINE Alu 149 202 -100 207 0 0 0 chr1 29837411 29837434 -252356230 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1600 142 3 115 chr1 29837434 29837525 -252356139 + AluJo SINE Alu 202 302 0 275 208 0 0 chr1 29837525 29837578 -252356086 - Tigger1 DNA MER2_type -2363 55 3 2189 84 10 32 chr1 29837578 29837887 -252355777 + AluSc SINE Alu 1 302 -7 183 361 0 0 chr1 29837938 29838010 -252355654 - L3b LINE CR1 -294 1289 1218 1384 170 116 33 chr1 29838053 29838329 -252355335 - AluJo SINE Alu -13 299 1 2435 93 3 0 chr1 29838334 29838634 -252355030 - AluSx SINE Alu -11 301 1 2038 130 0 65 chr1 29838634 29838956 -252354708 - AluJb SINE Alu -11 301 1 534 268 32 6 chr1 29839050 29839207 -252354457 - MIR SINE MIR -58 204 44 369 225 0 12 chr1 29839517 29839597 -252354067 - L2 LINE L2 -1 3271 3193 210 344 154 41 chr1 29840317 29840472 -252353192 + MIR3 SINE MIR 19 169 -39 354 312 45 32 chr1 29840844 29840998 -252352666 - MIR3 SINE MIR -7 201 46 293 276 76 9 chr1 29841241 29841346 -252352318 + MIR SINE MIR 19 130 -78 844 113 66 40 chr1 29841355 29841506 -252352158 - FRAM SINE Alu -1 175 21 315 250 95 17 chr1 29841519 29841635 -252352029 + MIR SINE MIR 134 258 -4 278 148 19 0 chr1 29842157 29842211 -252351453 + CT-rich Low_complexity Low_complexity 2 56 0 1238 66 0 0 chr1 29842226 29842377 -252351287 + AluSq SINE Alu 131 281 -32 213 39 0 0 chr1 29842377 29842403 -252351261 + (CAAT)n Simple_repeat Simple_repeat 4 29 0 290 313 67 20 chr1 29842588 29842783 -252350881 + L1MC4a LINE L1 5692 5895 -1913 414 186 199 62 chr1 29843076 29843367 -252350297 - L1ME4a LINE L1 -185 5936 5606 744 151 50 0 chr1 29843381 29843500 -252350164 - FLAM_A SINE Alu -4 129 5 2446 64 3 17 chr1 29843517 29843798 -252349866 + AluSp SINE Alu 1 279 -34 226 0 0 0 chr1 29843798 29843823 -252349841 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2446 64 3 17 chr1 29843823 29843839 -252349825 + AluSp SINE Alu 279 294 -19 2204 88 0 0 chr1 29843863 29844158 -252349506 - AluY SINE Alu -16 295 1 276 225 70 14 chr1 29844480 29844551 -252349113 + Charlie8 DNA MER1_type 105 179 -2238 263 128 0 0 chr1 29844616 29844655 -252349009 + Charlie8 DNA MER1_type 1368 1406 -1011 2077 114 7 7 chr1 29844711 29845019 -252348645 + AluSx SINE Alu 1 308 -4 218 264 0 0 chr1 29845339 29845392 -252348272 + L2 LINE L2 2837 2889 -425 834 216 0 0 chr1 29845394 29845570 -252348094 - FRAM SINE Alu -5 171 1 2026 99 38 0 chr1 29845590 29845882 -252347782 + AluSp SINE Alu 1 303 -10 410 197 0 0 chr1 29845895 29845971 -252347693 + AluJ/FLAM SINE Alu 1 76 -236 659 103 0 60 chr1 29845971 29846087 -252347577 - Tigger1 DNA MER2_type -1681 737 629 556 127 0 0 chr1 29846139 29846218 -252347446 - AluJ/FLAM SINE Alu -232 80 2 1928 112 28 0 chr1 29846219 29846505 -252347159 - Tigger1 DNA MER2_type -1601 817 524 2500 58 0 3 chr1 29846505 29846815 -252346849 - AluSc SINE Alu 0 309 1 204 265 20 0 chr1 29846825 29846874 -252346790 + MER5B DNA MER1_type 127 176 -2 2065 119 13 0 chr1 29846884 29847186 -252346478 - AluSx SINE Alu -6 306 1 233 330 38 18 chr1 29847472 29847647 -252346017 + MIR SINE MIR 34 211 -48 1302 159 183 0 chr1 29847733 29847853 -252345811 - AluJb SINE Alu -5 297 200 216 0 0 0 chr1 29847853 29847877 -252345787 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1302 159 183 0 chr1 29847877 29848007 -252345657 - AluJb SINE Alu -102 200 1 262 244 8 102 chr1 29848108 29848235 -252345429 + LTR67 LTR ERVL 429 543 -14 21 0 0 0 chr1 29848237 29848258 -252345406 + AT_rich Low_complexity Low_complexity 1 21 0 741 152 67 96 chr1 29848547 29848663 -252345001 - MER5A DNA MER1_type 0 189 78 2244 84 3 0 chr1 29848663 29848961 -252344703 - AluSg SINE Alu -11 299 1 741 152 67 96 chr1 29848961 29849022 -252344642 - MER5A DNA MER1_type -111 78 17 2124 120 0 0 chr1 29849272 29849571 -252344093 - AluSx SINE Alu -13 299 1 592 194 47 16 chr1 29849941 29850070 -252343594 - FLAM_A SINE Alu 0 133 1 245 288 106 38 chr1 29850430 29850562 -252343102 + MIR3 SINE MIR 30 170 -38 2197 107 7 0 chr1 29850626 29850924 -252342740 - AluSx SINE Alu -12 300 1 187 311 78 48 chr1 29851003 29851106 -252342558 + L2 LINE L2 3034 3139 -174 276 241 0 17 chr1 29852000 29852058 -252341606 + MIR3 SINE MIR 113 169 -39 2312 72 3 3 chr1 29853675 29853981 -252339683 + AluSx SINE Alu 1 306 -6 654 172 45 30 chr1 29853982 29854116 -252339548 + MER4D LTR ERV1 768 903 0 2194 92 6 19 chr1 29854183 29854500 -252339164 + AluSp SINE Alu 1 313 0 1351 74 6 0 chr1 29854500 29854676 -252338988 + AluSp SINE Alu 134 310 -3 199 214 24 24 chr1 29854735 29854777 -252338887 - L2 LINE L2 -75 3238 3197 1920 114 37 0 chr1 29854881 29855174 -252338490 + AluSg SINE Alu 1 303 0 1129 153 0 89 chr1 29855287 29855426 -252338238 + L1MB5 LINE L1 5901 6012 -162 1602 110 107 4 chr1 29855426 29855689 -252337975 + AluSg SINE Alu 1 290 -20 1129 153 0 89 chr1 29855689 29855785 -252337879 + L1MB5 LINE L1 6012 6115 -59 1364 117 19 6 chr1 29855788 29856045 -252337619 + AluJb SINE Alu 1 303 -9 339 203 0 0 chr1 29856112 29856171 -252337493 + L1MB5 LINE L1 6116 6174 0 331 232 24 0 chr1 29856817 29856903 -252336761 - MIR SINE MIR -61 147 75 330 240 125 31 chr1 29856926 29857022 -252336642 + L2 LINE L2 3209 3313 0 749 192 64 19 chr1 29857084 29857240 -252336424 + FRAM SINE Alu 1 163 -3 2134 64 43 0 chr1 29857260 29857542 -252336122 + AluY SINE Alu 1 294 -17 1634 173 6 13 chr1 29857710 29858023 -252335641 - AluJb SINE Alu -1 311 1 1458 153 0 4 chr1 29858056 29858297 -252335367 - AluJb SINE Alu -13 299 60 885 146 7 7 chr1 29858297 29858448 -252335216 - AluJo SINE Alu -161 151 1 2168 93 3 0 chr1 29858458 29858747 -252334917 - AluSg SINE Alu -20 290 1 333 160 120 0 chr1 29858755 29858830 -252334834 - L1MC/D LINE L1 -1991 5817 5734 378 184 0 0 chr1 29858901 29858977 -252334687 + (TG)n Simple_repeat Simple_repeat 2 77 0 1848 134 17 7 chr1 29859678 29859970 -252333694 - AluJb SINE Alu -17 295 1 267 263 37 34 chr1 29860408 29860598 -252333066 - MIR SINE MIR -13 249 13 427 229 106 70 chr1 29861162 29861389 -252332275 - MIR SINE MIR -6 256 22 279 204 161 65 chr1 29862040 29862133 -252331531 + MIR SINE MIR 37 138 -70 436 222 105 46 chr1 29862734 29862887 -252330777 - MIR SINE MIR 0 262 101 532 339 63 5 chr1 29862958 29863179 -252330485 - MIR SINE MIR -3 259 26 896 109 0 36 chr1 29863182 29863319 -252330345 - FLAM_C SINE Alu 0 133 2 2123 92 14 3 chr1 29863351 29863643 -252330021 + AluSp SINE Alu 1 295 -18 2479 44 0 0 chr1 29863852 29864149 -252329515 - AluY SINE Alu -13 298 2 623 218 16 8 chr1 29864250 29864374 -252329290 + L2 LINE L2 3189 3313 0 23 54 0 0 chr1 29864584 29864621 -252329043 + AT_rich Low_complexity Low_complexity 1 37 0 309 273 68 0 chr1 29864762 29864850 -252328814 + MIR SINE MIR 102 195 -67 349 123 41 0 chr1 29865458 29865531 -252328133 + CT-rich Low_complexity Low_complexity 1 76 0 2194 105 3 0 chr1 29865531 29865836 -252327828 - AluSp SINE Alu -7 306 1 609 218 0 0 chr1 29865844 29865954 -252327710 - FRAM SINE Alu -67 109 1 216 299 109 22 chr1 29865965 29866149 -252327515 + L2 LINE L2 2563 2762 -552 255 220 37 119 chr1 29866771 29866880 -252326784 + MIR SINE MIR 21 120 -142 1726 132 45 7 chr1 29867376 29867663 -252326001 + AluJo SINE Alu 6 303 -9 433 287 143 19 chr1 29867667 29867876 -252325788 + MIR SINE MIR 28 262 0 552 246 8 8 chr1 29867898 29868016 -252325648 - MER5B DNA MER1_type -1 177 60 229 253 0 58 chr1 29868043 29868130 -252325534 - MIR SINE MIR -9 253 172 * 418 253 238 21 chr1 29868113 29868394 -252325270 - L2 LINE L2 0 3313 2972 581 210 8 17 chr1 29868404 29868523 -252325141 + AluJo/FLAM SINE Alu 11 128 -184 2293 74 0 3 chr1 29868525 29868821 -252324843 + AluSp SINE Alu 1 295 -18 220 164 36 18 chr1 29868839 29868894 -252324770 - L2 LINE L2 -337 2976 2921 387 246 39 31 chr1 29869105 29869235 -252324429 - MIR3 SINE MIR -34 174 44 931 167 61 10 chr1 29869404 29869602 -252324062 + MER3 DNA MER1_type 2 209 0 221 295 26 13 chr1 29869636 29869714 -252323950 - MIR SINE MIR -119 143 65 1475 96 0 0 chr1 29869873 29870072 -252323592 - AluSg/x SINE Alu -2 310 112 973 161 5 36 chr1 29870084 29870276 -252323388 - AluJo SINE Alu -125 187 2 230 250 0 69 chr1 29870412 29870484 -252323180 - MIR SINE MIR -170 92 26 203 269 92 77 chr1 29870866 29870996 -252322668 - MIR SINE MIR -24 238 107 2156 109 0 0 chr1 29871270 29871573 -252322091 - AluY SINE Alu -8 303 1 1764 138 74 0 chr1 29871576 29871859 -252321805 - AluJb SINE Alu -8 304 1 2289 109 0 0 chr1 29872139 29872451 -252321213 + AluSx SINE Alu 1 312 0 515 267 82 30 chr1 29872649 29872881 -252320783 - MIR SINE MIR -1 261 18 279 232 120 56 chr1 29873238 29873380 -252320284 + MIR SINE MIR 100 250 -12 251 120 0 20 chr1 29874027 29874077 -252319587 + (AGGGGG)n Simple_repeat Simple_repeat 2 50 0 1986 75 11 11 chr1 29874177 29874456 -252319208 - AluSq SINE Alu -34 279 1 1334 160 126 8 chr1 29874538 29874800 -252318864 - AluJo SINE Alu -18 294 2 193 402 54 0 chr1 29874959 29875051 -252318613 + L2 LINE L2 3144 3240 -32 804 134 0 85 chr1 29875096 29875260 -252318404 + AluJb SINE Alu 156 305 -7 764 154 8 46 chr1 29875323 29875453 -252318211 - FLAM_C SINE Alu -8 125 1 374 300 9 18 chr1 29875453 29875563 -252318101 - L2 LINE L2 -2 3311 3203 785 147 0 70 chr1 29875781 29875924 -252317740 - FLAM_C SINE Alu 0 133 1 2053 93 3 13 chr1 29876098 29876398 -252317266 - AluSc SINE Alu -12 297 1 631 228 108 12 chr1 29876526 29876693 -252316971 + MIR SINE MIR 31 213 -49 246 254 0 18 chr1 29876730 29876785 -252316879 + L2 LINE L2 3210 3263 -9 1156 138 43 43 chr1 29877118 29877350 -252316314 - MER46A DNA MER2_type -4 232 1 2320 86 0 0 chr1 29877517 29877821 -252315843 - AluSg SINE Alu -6 304 1 648 209 0 43 chr1 29878125 29878264 -252315400 - FLAM_A SINE Alu 0 133 1 798 197 20 7 chr1 29878277 29878444 -252315220 - FRAM SINE Alu 0 169 1 1989 137 3 0 chr1 29878464 29878763 -252314901 - AluSx SINE Alu -12 300 1 198 0 0 0 chr1 29878763 29878785 -252314879 + (A)n Simple_repeat Simple_repeat 1 22 0 2082 92 18 0 chr1 29879380 29879664 -252314000 - AluSg SINE Alu -19 291 3 297 125 0 0 chr1 29879685 29879725 -252313939 - MER57A LTR ERV1 -69 334 295 1872 127 32 35 chr1 29879841 29879886 -252313778 - L1MB4 LINE L1 0 6180 6136 2010 117 10 7 chr1 29879886 29880184 -252313480 + AluSx SINE Alu 1 299 -13 1872 127 32 35 chr1 29880184 29880477 -252313187 - L1MB4 LINE L1 -44 6136 5843 719 249 30 10 chr1 29880565 29880766 -252312898 - L1MC4 LINE L1 -143 7899 7695 262 265 0 0 chr1 29880781 29880849 -252312815 - L1MC4 LINE L1 -281 7761 7694 434 210 7 101 chr1 29880879 29880990 -252312674 - AluJo SINE Alu -79 233 136 1902 121 0 10 chr1 29880990 29881288 -252312376 - AluSg SINE Alu -14 296 2 434 210 7 101 chr1 29881288 29881314 -252312350 - AluJo SINE Alu -176 136 109 2206 105 0 0 chr1 29881322 29881618 -252312046 + AluSx SINE Alu 1 296 -16 1265 219 140 4 chr1 29881624 29882109 -252311555 - L1MC4a LINE L1 -558 7250 6535 706 149 26 0 chr1 29882152 29882266 -252311398 - FLAM_C SINE Alu 0 143 27 2450 162 45 14 chr1 29883319 29883382 -252310282 - L1MB3 LINE L1 0 6183 6123 2302 102 0 0 chr1 29883382 29883686 -252309978 - AluSx SINE Alu -8 304 1 2450 162 45 14 chr1 29883686 29884110 -252309554 - L1MB3 LINE L1 -60 6123 5681 2274 90 0 3 chr1 29884520 29884832 -252308832 - AluY SINE Alu 0 311 1 1412 184 228 0 chr1 29885166 29885486 -252308178 + MSTD LTR MaLR 2 394 -2 266 283 30 72 chr1 29885734 29885900 -252307764 - L1MC4 LINE L1 -124 7918 7760 1856 131 40 3 chr1 29885913 29886211 -252307453 + AluSx SINE Alu 1 309 -3 2159 95 0 3 chr1 29886367 29886663 -252307001 - AluY SINE Alu -16 295 1 976 138 7 0 chr1 29887114 29887266 -252306398 - AluSx SINE Alu -159 153 1 968 193 0 35 chr1 29887266 29887468 -252306196 + AluJo SINE Alu 101 295 -17 2401 78 3 0 chr1 29887495 29887804 -252305860 + AluSp SINE Alu 1 310 -3 1043 118 7 0 chr1 29888399 29888551 -252305113 - AluSx SINE Alu -159 153 1 922 206 0 34 chr1 29888551 29888755 -252304909 + AluJo SINE Alu 101 297 -15 2371 73 3 0 chr1 29888782 29889085 -252304579 + AluSp SINE Alu 1 304 -9 1055 105 7 0 chr1 29889671 29889823 -252303841 - AluSx SINE Alu -159 153 1 951 197 0 35 chr1 29889823 29890026 -252303638 + AluJo SINE Alu 101 296 -16 2270 81 3 0 chr1 29890053 29890349 -252303315 + AluSp SINE Alu 1 297 -16 261 225 90 81 chr1 29890368 29890479 -252303185 + MER5A DNA MER1_type 78 189 0 22 0 0 0 chr1 29890637 29890659 -252303005 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 29891095 29891127 -252302537 + AT_rich Low_complexity Low_complexity 1 32 0 1900 154 3 3 chr1 29891326 29891638 -252302026 - AluSx SINE Alu 0 312 1 224 372 21 21 chr1 29891815 29891844 -252301820 - L3b LINE CR1 -328 1255 1227 1912 164 7 16 chr1 29891844 29892154 -252301510 - AluJb SINE Alu -5 307 1 224 372 21 21 chr1 29892154 29892218 -252301446 - L3b LINE CR1 -355 1228 1162 844 302 31 16 chr1 29892666 29892921 -252300743 + MIR SINE MIR 3 261 -1 637 247 41 21 chr1 29892926 29893120 -252300544 - MIR SINE MIR -32 230 33 22 0 0 0 chr1 29893275 29893297 -252300367 + AT_rich Low_complexity Low_complexity 1 22 0 1794 158 16 39 chr1 29893314 29893625 -252300039 + AluJb SINE Alu 7 310 -2 414 53 0 0 chr1 29893674 29893731 -252299933 + (TA)n Simple_repeat Simple_repeat 2 58 0 1980 142 0 0 chr1 29893731 29894013 -252299651 - AluSx SINE Alu -29 283 2 413 167 68 61 chr1 29894036 29894168 -252299496 - L1MC4 LINE L1 -137 7905 7773 180 262 16 33 chr1 29894232 29894293 -252299371 + MER5B DNA MER1_type 84 143 -35 1296 137 34 0 chr1 29894392 29894596 -252299068 - MER46A DNA MER2_type 0 236 26 1665 155 63 36 chr1 29894696 29894999 -252298665 - AluJb SINE Alu 0 312 2 24 0 0 0 chr1 29896933 29896957 -252296707 + AT_rich Low_complexity Low_complexity 1 24 0 2177 95 3 24 chr1 29897652 29897970 -252295694 - AluSp SINE Alu 0 312 1 1155 77 0 14 chr1 29897971 29898114 -252295550 - AluSq/x SINE Alu -171 141 1 239 118 79 13 chr1 29898133 29898209 -252295455 - L1ME4a LINE L1 0 6121 6041 712 194 0 0 chr1 29898650 29898774 -252294890 - FRAM SINE Alu -7 169 46 869 194 12 0 chr1 29898803 29898963 -252294701 + FRAM SINE Alu 9 170 -6 1751 183 0 28 chr1 29899017 29899307 -252294357 - AluJb SINE Alu -30 282 1 2252 116 0 0 chr1 29899309 29899603 -252294061 - AluSq SINE Alu -19 294 1 623 229 25 8 chr1 29899626 29899748 -252293916 - FLAM_C SINE Alu -18 125 2 2183 107 3 3 chr1 29900169 29900458 -252293206 - AluSc SINE Alu -12 297 9 1220 162 192 8 chr1 29900676 29900910 -252292754 - AluJb SINE Alu -35 277 1 218 358 73 9 chr1 29901061 29901170 -252292494 + MIR SINE MIR 36 151 -57 31 26 0 0 chr1 29901664 29901702 -252291962 + AT_rich Low_complexity Low_complexity 1 38 0 305 300 67 25 chr1 29902194 29902314 -252291350 + MIR SINE MIR 64 188 -74 2426 76 23 7 chr1 29902327 29902629 -252291035 + AluY SINE Alu 1 307 -4 2393 89 0 6 chr1 29902629 29902942 -252290722 + AluY SINE Alu 1 311 0 1960 78 0 8 chr1 29903108 29903350 -252290314 - AluSp SINE Alu -21 292 53 2338 94 16 3 chr1 29903388 29903697 -252289967 - AluSq SINE Alu 0 313 1 1850 66 9 0 chr1 29903848 29904074 -252289590 - AluY SINE Alu -1 310 83 261 0 0 0 chr1 29904085 29904114 -252289550 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1360 94 22 11 chr1 29904117 29904298 -252289366 - AluSg/x SINE Alu -25 285 103 27 29 0 0 chr1 29906531 29906565 -252287099 + AT_rich Low_complexity Low_complexity 1 34 0 315 269 91 60 chr1 29906602 29906945 -252286719 - L1ME LINE L1 -597 5573 5242 1912 119 48 14 chr1 29906945 29907239 -252286425 - AluSq SINE Alu -9 304 1 1899 161 0 0 chr1 29907241 29907533 -252286131 - AluJo SINE Alu -20 292 1 1335 189 124 0 chr1 29907534 29907799 -252285865 - AluJo SINE Alu -3 299 2 315 269 91 60 chr1 29907799 29907914 -252285750 - L1ME LINE L1 -928 5242 5132 1497 165 90 0 chr1 29907914 29908180 -252285484 + AluJo SINE Alu 1 290 -22 315 269 91 60 chr1 29908180 29908361 -252285303 - L1ME LINE L1 -1038 5132 4907 233 234 0 0 chr1 29909300 29909347 -252284317 + MIR SINE MIR 107 153 -109 214 182 23 0 chr1 29909457 29909501 -252284163 + MIR SINE MIR 170 214 -48 1691 155 93 48 chr1 29910115 29910514 -252283150 - MSTA LTR MaLR -11 417 1 215 323 0 16 chr1 29910630 29910692 -252282972 - L2 LINE L2 -186 3086 3026 2469 70 7 0 chr1 29911160 29911458 -252282206 + AluY SINE Alu 1 300 -11 306 284 113 28 chr1 29911505 29911646 -252282018 - L2 LINE L2 -299 2973 2821 199 235 39 0 chr1 29912144 29912195 -252281469 + MIR SINE MIR 93 145 -63 2085 91 12 63 chr1 29912220 29912539 -252281125 + AluSx SINE Alu 1 303 -9 378 232 63 11 chr1 29912940 29913035 -252280629 + MIR SINE MIR 48 147 -61 180 250 0 25 chr1 29913135 29913175 -252280489 + MIR SINE MIR 32 70 -192 724 131 31 17 chr1 29913345 29913571 -252280093 - AluJb SINE Alu -1 311 2 231 329 26 53 chr1 29913906 29913997 -252279667 + MER5A DNA MER1_type 18 110 -79 1806 181 10 0 chr1 29913997 29914295 -252279369 - AluJo SINE Alu -11 301 1 231 329 26 53 chr1 29914295 29914314 -252279350 + MER5A DNA MER1_type 110 128 -61 2407 101 0 0 chr1 29914314 29914620 -252279044 - AluSq SINE Alu -7 306 1 231 329 26 53 chr1 29914620 29914660 -252279004 + MER5A DNA MER1_type 128 165 -24 229 250 21 0 chr1 29914726 29914774 -252278890 - L2 LINE L2 -18 3254 3206 192 40 0 0 chr1 29916584 29916609 -252277055 + (CA)n Simple_repeat Simple_repeat 2 26 0 1923 109 4 0 chr1 29916882 29917139 -252276525 + AluSx SINE Alu 53 310 -2 573 268 81 77 chr1 29917139 29917193 -252276471 - MIR SINE MIR -8 254 202 2378 102 7 0 chr1 29917193 29917498 -252276166 - AluSp SINE Alu -6 307 1 573 268 81 77 chr1 29917498 29917693 -252275971 - MIR SINE MIR -60 202 1 1233 161 0 18 chr1 29917796 29918013 -252275651 - AluSx SINE Alu -98 214 2 974 264 62 52 chr1 29918013 29918371 -252275293 - L1M4 LINE L1 -1372 4774 4406 2079 105 3 69 chr1 29918371 29918705 -252274959 + AluSx SINE Alu 1 312 0 974 264 62 52 chr1 29918705 29918959 -252274705 - L1M4 LINE L1 -1740 4406 4156 415 295 55 49 chr1 29918966 29919149 -252274515 - MIR SINE MIR -76 186 3 307 265 15 0 chr1 29919302 29919370 -252274294 + MIR SINE MIR 47 115 -93 1141 224 123 41 chr1 29919376 29919715 -252273949 - L2 LINE L2 0 3313 3003 2298 125 0 0 chr1 29919715 29920026 -252273638 + AluSx SINE Alu 1 311 -1 1141 224 123 41 chr1 29920026 29920262 -252273402 - L2 LINE L2 -310 3003 2788 2455 100 0 0 chr1 29920262 29920572 -252273092 + AluSx SINE Alu 1 310 -2 1141 224 123 41 chr1 29920572 29920698 -252272966 - L2 LINE L2 -525 2788 2539 209 33 33 0 chr1 29920698 29920728 -252272936 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 394 253 56 8 chr1 29920862 29920975 -252272689 + MIR SINE MIR 21 129 -79 2174 100 19 22 chr1 29920979 29921290 -252272374 - AluSp SINE Alu -3 310 1 230 246 199 12 chr1 29921292 29921463 -252272201 - L1MC5 LINE L1 -491 7470 7268 379 159 0 0 chr1 29921544 29921607 -252272057 - MLT1D LTR MaLR 0 505 443 782 175 6 73 chr1 29921610 29921787 -252271877 + FRAM SINE Alu 2 166 0 325 258 39 8 chr1 29921821 29921949 -252271715 + CT-rich Low_complexity Low_complexity 4 135 0 663 192 51 128 chr1 29922095 29922329 -252271335 + LTR33 LTR ERVL 1 216 -305 1470 109 0 199 chr1 29922371 29922728 -252270936 - AluSx SINE Alu -16 286 1 591 226 8 0 chr1 29922780 29922913 -252270751 - L1MC5 LINE L1 -519 7442 7309 1778 113 63 76 chr1 29922919 29923221 -252270443 - AluSx SINE Alu -14 298 1 427 129 14 0 chr1 29923224 29923294 -252270370 - L2 LINE L2 -771 2543 2473 249 128 0 21 chr1 29923299 29923346 -252270318 + MIR SINE MIR 119 164 -98 719 102 8 51 chr1 29923737 29923855 -252269809 - FLAM_C SINE Alu -1 142 30 2307 122 0 0 chr1 29924195 29924507 -252269157 + AluSx SINE Alu 1 312 0 412 237 136 0 chr1 29925032 29925150 -252268514 + L1MC5 LINE L1 7309 7442 -519 885 138 0 0 chr1 29925202 29925325 -252268339 + FLAM_C SINE Alu 1 123 -20 247 298 6 58 chr1 29925639 29925835 -252267829 + CT-rich Low_complexity Low_complexity 1 185 0 2066 142 0 6 chr1 29926285 29926596 -252267068 - AluJb SINE Alu -3 309 1 204 308 0 13 chr1 29926750 29926828 -252266836 + (TGG)n Simple_repeat Simple_repeat 2 78 0 426 259 167 12 chr1 29926858 29927020 -252266644 + MIR SINE MIR 70 256 -6 2117 71 48 4 chr1 29927545 29927837 -252265827 + AluSc SINE Alu 1 304 0 297 367 55 0 chr1 29927971 29928080 -252265584 + L2 LINE L2 3199 3313 0 506 248 23 8 chr1 29928097 29928230 -252265434 + MIR SINE MIR 16 150 -58 1450 172 3 134 chr1 29929090 29929433 -252264231 - AluSx SINE Alu -14 298 1 1802 145 3 61 chr1 29929458 29929769 -252263895 - AluJo SINE Alu -19 293 1 396 315 42 29 chr1 29929858 29930030 -252263634 - MIR3 SINE MIR -38 170 19 184 103 0 0 chr1 29930103 29930132 -252263532 - L2 LINE L2 0 3272 3244 474 269 113 12 chr1 29930167 29930327 -252263337 - MIR SINE MIR -65 197 22 2085 141 0 0 chr1 29930441 29930725 -252262939 + AluSx SINE Alu 1 284 -28 186 206 0 0 chr1 29931340 29931374 -252262290 - L2 LINE L2 -19 3294 3261 2278 114 0 0 chr1 29931419 29931716 -252261948 - AluSx SINE Alu -15 297 1 2434 87 7 0 chr1 29931729 29932038 -252261626 - AluY SINE Alu 0 311 1 1552 185 39 31 chr1 29932039 29932325 -252261339 - AluJo SINE Alu -14 298 11 208 156 0 0 chr1 29932347 29932379 -252261285 - MIR SINE MIR -114 148 117 299 367 143 5 chr1 29932485 29932681 -252260983 - L2 LINE L2 -5 3267 3045 740 230 28 115 chr1 29932688 29932738 -252260926 - MIR SINE MIR 0 262 209 2369 106 0 0 chr1 29932738 29933039 -252260625 - AluSx SINE Alu -11 301 1 740 230 28 115 chr1 29933039 29933275 -252260389 - MIR SINE MIR -53 209 1 733 135 0 10 chr1 29933519 29933623 -252260041 - FLAM_C SINE Alu -20 123 21 3936 164 22 69 chr1 29933654 29933727 -252259937 - L1MB2 LINE L1 -45 6138 6063 222 37 0 0 chr1 29933727 29933754 -252259910 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 3936 164 22 69 chr1 29933754 29933789 -252259875 - L1MB2 LINE L1 -120 6063 6028 2179 133 3 0 chr1 29933789 29934091 -252259573 + AluSx SINE Alu 1 303 -9 3936 164 22 69 chr1 29934091 29934487 -252259177 - L1MB2 LINE L1 -155 6028 5615 2554 44 0 41 chr1 29934487 29934806 -252258858 + AluY SINE Alu 2 307 -4 3936 164 22 69 chr1 29934806 29934818 -252258846 - L1MB2 LINE L1 -568 5615 5604 2299 102 23 0 chr1 29934818 29935123 -252258541 + AluSx SINE Alu 1 312 0 3936 164 22 69 chr1 29935123 29935765 -252257899 - L1MB2 LINE L1 -579 5604 4933 1861 179 3 3 chr1 29935765 29936062 -252257602 - AluJo SINE Alu -15 297 1 3936 164 22 69 chr1 29936062 29936073 -252257591 - L1MB2 LINE L1 -1250 4933 4923 2259 102 3 0 chr1 29936073 29936367 -252257297 - AluSx SINE Alu -17 295 1 3936 164 22 69 chr1 29936367 29936961 -252256703 - L1MB2 LINE L1 -1260 4923 4303 2532 61 0 0 chr1 29936961 29937255 -252256409 - AluY SINE Alu -17 294 1 3936 164 22 69 chr1 29937255 29937323 -252256341 - L1MB2 LINE L1 -1880 4303 4434 2415 96 3 10 chr1 29937323 29937637 -252256027 - AluSx SINE Alu 0 312 1 3936 164 22 69 chr1 29937637 29937713 -252255951 - L1MB2 LINE L1 -1748 4435 4357 202 250 300 12 chr1 29937732 29937812 -252255852 - MIR SINE MIR -62 146 44 383 293 18 42 chr1 29938047 29938214 -252255450 + MIR SINE MIR 36 198 -64 498 201 30 67 chr1 29939130 29939264 -252254400 - MIR SINE MIR -121 141 13 624 316 63 63 chr1 29939366 29939761 -252253903 - L2 LINE L2 -51 3221 2827 723 224 67 12 chr1 29939848 29939904 -252253760 - MER5A DNA MER1_type -7 182 131 2382 97 0 10 chr1 29939904 29940213 -252253451 - AluSx SINE Alu -6 306 1 723 224 67 12 chr1 29940213 29940321 -252253343 - MER5A DNA MER1_type -58 131 9 946 273 101 59 chr1 29940486 29940890 -252252774 + L2 LINE L2 2570 2956 -357 690 186 154 19 chr1 29940890 29941046 -252252618 - MER69A DNA AcHobo 0 177 1 946 273 101 59 chr1 29941046 29941111 -252252553 + L2 LINE L2 2956 3017 -296 840 159 0 43 chr1 29941111 29941249 -252252415 + AluJo/FLAM SINE Alu 2 133 -169 946 273 101 59 chr1 29941256 29941474 -252252190 + L2 LINE L2 3016 3312 -1 237 323 54 46 chr1 29941603 29941733 -252251931 - L2 LINE L2 -208 3064 2934 296 143 20 0 chr1 29942101 29942150 -252251514 - LTR16A LTR ERVL -6 444 395 696 150 53 9 chr1 29942222 29942335 -252251329 - FLAM_C SINE Alu -23 120 3 322 130 0 0 chr1 29942346 29942400 -252251264 - Alu SINE Alu -4 296 243 416 211 60 38 chr1 29942402 29942507 -252251157 - L1MC5 LINE L1 -244 7717 7605 1894 151 9 25 chr1 29942507 29942824 -252250840 - AluJo SINE Alu 0 312 1 416 211 60 38 chr1 29942824 29942903 -252250761 - L1MC5 LINE L1 -356 7605 7529 2140 101 42 0 chr1 29942914 29943201 -252250463 - AluSq SINE Alu -14 299 1 208 340 115 35 chr1 29943232 29943544 -252250120 + L2 LINE L2 1807 2143 -1171 798 355 55 28 chr1 29943546 29944047 -252249617 + L2 LINE L2 2307 2830 -484 2422 89 0 0 chr1 29944047 29944339 -252249325 - AluSg SINE Alu -18 292 1 798 355 55 28 chr1 29944339 29944476 -252249188 + L2 LINE L2 2830 2962 -352 698 182 241 16 chr1 29944810 29944828 -252248836 - MER96B DNA MER1_type? -107 310 297 2471 66 0 28 chr1 29944828 29945147 -252248517 + AluY SINE Alu 2 311 0 698 182 241 16 chr1 29945147 29945290 -252248374 - MER96B DNA MER1_type? -120 297 187 1915 127 3 84 chr1 29945290 29945622 -252248042 + AluSx SINE Alu 1 305 -7 698 182 241 16 chr1 29945622 29945712 -252247952 - MER96B DNA MER1_type? -230 187 1 2331 184 36 22 chr1 29946036 29946477 -252247187 - Charlie1 DNA MER1_type 0 2761 2310 2245 90 17 13 chr1 29946477 29946776 -252246888 - AluSq SINE Alu -12 301 2 2331 184 36 22 chr1 29946776 29946868 -252246796 - Charlie1 DNA MER1_type -451 2310 2221 1729 180 0 10 chr1 29946868 29947162 -252246502 - AluJb SINE Alu -9 303 13 300 269 47 125 chr1 29947170 29947249 -252246415 - L2 LINE L2 -224 3048 2964 2384 89 3 0 chr1 29947249 29947551 -252246113 + AluSg SINE Alu 1 303 -7 300 269 47 125 chr1 29947551 29947727 -252245937 - L2 LINE L2 -308 2964 2813 531 299 110 58 chr1 29947747 29947925 -252245739 + L2 LINE L2 2887 3054 -218 2262 113 3 3 chr1 29947925 29948227 -252245437 - AluSx SINE Alu -10 302 1 531 299 110 58 chr1 29948227 29948412 -252245252 + L2 LINE L2 3054 3269 -3 605 287 35 15 chr1 29948427 29948629 -252245035 + MIR SINE MIR 48 253 -9 1893 121 3 101 chr1 29948651 29948852 -252244812 - AluJb SINE Alu 0 312 158 2239 118 0 0 chr1 29948852 29949149 -252244515 - AluSg SINE Alu -13 297 1 1893 121 3 101 chr1 29949149 29949293 -252244371 - AluJb SINE Alu -154 158 1 1288 133 5 35 chr1 29949535 29949738 -252243926 - AluJo SINE Alu -109 203 7 349 244 83 65 chr1 29949763 29949931 -252243733 - L1ME4a LINE L1 -5 6116 5946 2069 142 0 16 chr1 29949985 29950301 -252243363 - AluSq SINE Alu -2 311 1 978 92 8 8 chr1 29950304 29950435 -252243229 - AluSq/x SINE Alu -179 133 3 234 203 145 14 chr1 29950489 29950558 -252243106 - HsTC2 DNA Tc2 -7 1891 1814 2070 141 0 22 chr1 29950560 29950879 -252242785 + AluJo SINE Alu 1 312 0 515 200 69 15 chr1 29950883 29951013 -252242651 - MLT1A1 LTR MaLR -58 307 171 656 137 0 10 chr1 29951075 29951177 -252242487 - AluJb SINE Alu -8 304 204 432 163 149 85 chr1 29951186 29951279 -252242385 - MLT1A1 LTR MaLR -215 150 44 2393 85 7 0 chr1 29951279 29951573 -252242091 + AluSp SINE Alu 1 296 -17 432 163 149 85 chr1 29951573 29951620 -252242044 - MLT1A1 LTR MaLR -321 44 1 2480 76 3 3 chr1 29953129 29953431 -252240233 + AluSc SINE Alu 5 306 -3 1045 104 0 0 chr1 29953870 29954004 -252239660 + AluSq/x SINE Alu 1 134 -178 1779 124 76 7 chr1 29954005 29954280 -252239384 + AluSx SINE Alu 13 306 -6 255 261 198 0 chr1 29954848 29954959 -252238705 + MIR SINE MIR 46 178 -84 299 203 14 14 chr1 29955389 29955458 -252238206 + MLT1K LTR MaLR 512 580 -8 660 219 57 31 chr1 29955488 29955716 -252237948 + MER113 DNA MER1_type? 3 236 -285 1795 154 3 46 chr1 29955722 29955850 -252237814 + AluJb SINE Alu 3 135 -177 2100 115 3 44 chr1 29955850 29956171 -252237493 + AluSx SINE Alu 5 312 0 1795 154 3 46 chr1 29956171 29956347 -252237317 + AluJb SINE Alu 135 294 -18 898 91 0 33 chr1 29956467 29956588 -252237076 + FLAM_C SINE Alu 14 130 -13 850 226 0 33 chr1 29956793 29956974 -252236690 - FAM SINE Alu 0 175 1 1406 108 10 5 chr1 29956976 29957204 -252236460 - AluY SINE Alu 0 311 98 314 206 176 76 chr1 29957710 29957841 -252235823 - MIR3 SINE MIR -3 205 62 534 151 0 0 chr1 29958292 29958398 -252235266 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 247 315 63 16 chr1 29958410 29958537 -252235127 - MIR SINE MIR -6 256 124 437 113 16 0 chr1 29958539 29958601 -252235063 + U7 snRNA snRNA 1 63 0 485 288 44 13 chr1 29958725 29958934 -252234730 - MIR SINE MIR -53 209 2 478 313 8 0 chr1 29959373 29959501 -252234163 + L2 LINE L2 2941 3069 -244 2221 128 3 7 chr1 29959513 29959819 -252233845 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr1 29959888 29959910 -252233754 + AT_rich Low_complexity Low_complexity 1 22 0 621 99 50 30 chr1 29959915 29960016 -252233648 + U6 snRNA snRNA 1 103 -4 23 0 0 0 chr1 29960016 29960039 -252233625 + AT_rich Low_complexity Low_complexity 1 23 0 276 222 87 3 chr1 29960065 29960152 -252233512 - MIR SINE MIR -83 125 23 241 265 0 60 chr1 29960213 29960296 -252233368 - MIR SINE MIR -65 143 66 2420 99 3 0 chr1 29960367 29960679 -252232985 - AluSp SINE Alu 0 313 1 271 270 55 32 chr1 29960806 29961015 -252232649 - L1ME3A LINE L1 -233 5937 5728 1956 143 0 0 chr1 29961057 29961337 -252232327 - AluSx SINE Alu -32 280 1 514 333 64 5 chr1 29961359 29961638 -252232026 - L1ME3A LINE L1 -456 5706 5412 1494 180 67 11 chr1 29961645 29961818 -252231846 - AluJo SINE Alu -11 301 139 243 0 0 0 chr1 29961818 29961845 -252231819 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2074 121 4 4 chr1 29961845 29962125 -252231539 - AluSx SINE Alu -32 280 1 1494 180 67 11 chr1 29962125 29962234 -252231430 - AluJo SINE Alu -172 140 2 787 249 105 4 chr1 29962318 29962547 -252231117 + MIR SINE MIR 1 252 -10 921 120 0 0 chr1 29962554 29962679 -252230985 + FLAM_C SINE Alu 1 125 -8 183 80 0 0 chr1 29962731 29962756 -252230908 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 2437 84 7 0 chr1 29962757 29963054 -252230610 - AluSc SINE Alu -10 299 1 912 181 184 6 chr1 29963335 29963642 -252230022 + L1MB3 LINE L1 5173 5534 -637 2206 108 0 16 chr1 29963642 29963948 -252229716 + AluY SINE Alu 1 301 -10 1112 173 6 0 chr1 29963971 29964150 -252229514 - FRAM SINE Alu -2 174 1 2572 155 78 28 chr1 29964150 29964320 -252229344 + L1MB3 LINE L1 5620 5780 -403 2001 147 3 3 chr1 29964320 29964620 -252229044 + AluJo SINE Alu 1 300 -12 1830 158 7 20 chr1 29964625 29964922 -252228742 + AluSx SINE Alu 5 297 -15 2572 155 78 28 chr1 29964922 29965282 -252228382 + L1MB3 LINE L1 5783 6183 0 3973 92 16 14 chr1 29965307 29965884 -252227780 + LTR8 LTR ERV1 1 578 -113 721 79 0 0 chr1 29965884 29965973 -252227691 + AluY SINE Alu 2 90 -221 347 289 141 0 chr1 29965973 29966101 -252227563 + MIR SINE MIR 57 202 -60 481 317 43 6 chr1 29966454 29966618 -252227046 + MIR SINE MIR 13 182 -80 472 185 0 12 chr1 29966631 29966712 -252226952 - FRAM/FAM SINE Alu -98 87 8 581 225 98 112 chr1 29966811 29966958 -252226706 + MLT1J LTR MaLR 20 168 -343 2702 169 24 62 chr1 29966958 29967199 -252226465 - MER34B LTR ERV1 0 565 316 2447 75 0 3 chr1 29967199 29967494 -252226170 - AluSq SINE Alu -19 294 1 2702 169 24 62 chr1 29967494 29967837 -252225827 - MER34B LTR ERV1 -249 316 3 581 225 98 112 chr1 29967837 29968045 -252225619 + MLT1J LTR MaLR 168 370 -141 407 232 29 22 chr1 29968128 29968266 -252225398 - LTR67 LTR ERVL -1 556 418 1052 167 29 1 chr1 29968812 29969014 -252224650 + LTR32 LTR ERVL 15 260 -211 3725 120 51 83 chr1 29969014 29969363 -252224301 - LTR8A LTR ERV1 -2 725 366 1984 164 10 6 chr1 29969363 29969674 -252223990 + AluJo SINE Alu 1 312 0 3725 120 51 83 chr1 29969674 29970073 -252223591 - LTR8A LTR ERV1 -361 366 1 1052 167 29 1 chr1 29970073 29970117 -252223547 + LTR32 LTR ERVL 260 301 -170 811 113 0 35 chr1 29970118 29970233 -252223431 - AluJ SINE Alu -14 298 188 3425 129 10 23 chr1 29970314 29970710 -252222954 + MER41E LTR ERV1 1 390 -122 2010 156 0 0 chr1 29970710 29970999 -252222665 - AluSx SINE Alu -23 289 1 3425 129 10 23 chr1 29970999 29971121 -252222543 + MER41E LTR ERV1 390 512 0 872 184 0 112 chr1 29971123 29971181 -252222483 - AluJ SINE Alu -121 191 128 2552 54 10 0 chr1 29971181 29971479 -252222185 - AluY SINE Alu -4 307 7 872 184 0 112 chr1 29971479 29971626 -252222038 - AluJ SINE Alu -184 128 9 266 294 0 0 chr1 29971657 29971725 -252221939 - MLT1H LTR MaLR -470 79 12 386 219 110 0 chr1 29971955 29972037 -252221627 + L2 LINE L2 3218 3308 -5 324 246 70 13 chr1 29972095 29972220 -252221444 + MIR SINE MIR 3 130 -78 1027 241 68 21 chr1 29972610 29972832 -252220832 + MIR SINE MIR 13 248 -14 324 0 0 0 chr1 29972840 29972876 -252220788 + (TG)n Simple_repeat Simple_repeat 1 36 0 2260 103 0 0 chr1 29972876 29973157 -252220507 - AluSx SINE Alu -28 284 1 1027 241 68 21 chr1 29973157 29973170 -252220494 + MIR SINE MIR 248 259 -3 2417 67 0 51 chr1 29973818 29974134 -252219530 - AluSg SINE Alu -10 300 1 1195 93 17 0 chr1 29974283 29974455 -252219209 + L1PA11 LINE L1 6000 6174 0 400 327 115 5 chr1 29974867 29975075 -252218589 + MIR SINE MIR 20 250 -12 559 284 35 15 chr1 29975146 29975343 -252218321 + MIR SINE MIR 51 251 -11 331 313 18 0 chr1 29975436 29975577 -252218087 - L1ME LINE L1 -529 5592 5450 543 298 41 37 chr1 29976255 29976473 -252217191 + MIR SINE MIR 44 262 0 * 640 202 161 57 chr1 29976457 29976563 -252217101 - MIR SINE MIR 0 262 168 2394 90 0 3 chr1 29976563 29976864 -252216800 + AluSg1 SINE Alu 1 300 -9 640 202 161 57 chr1 29976864 29976950 -252216714 - MIR SINE MIR -94 168 50 343 271 85 65 chr1 29977357 29977556 -252216108 + L2 LINE L2 3095 3297 -16 2580 73 0 0 chr1 29977557 29977857 -252215807 + AluSq SINE Alu 1 300 -13 207 0 0 0 chr1 29977857 29977880 -252215784 + (CATA)n Simple_repeat Simple_repeat 2 24 0 287 146 0 0 chr1 29977888 29977929 -252215735 + Alu SINE Alu 1 41 -262 381 93 0 0 chr1 29977948 29978002 -252215662 + AluS SINE Alu 23 76 -227 2126 113 55 0 chr1 29978057 29978350 -252215314 - AluSq SINE Alu -4 309 1 2553 53 0 0 chr1 29978459 29978762 -252214902 + AluY SINE Alu 1 303 -8 636 246 86 21 chr1 29979089 29979276 -252214388 + L2 LINE L2 2524 2722 -592 733 187 45 58 chr1 29979282 29979375 -252214289 + FRAM SINE Alu 1 93 -209 2505 84 0 0 chr1 29979375 29979684 -252213980 - AluY SINE Alu -2 309 1 733 187 45 58 chr1 29979684 29979745 -252213919 + FRAM SINE Alu 93 153 -13 1211 197 5 0 chr1 29979757 29979980 -252213684 + AluJo SINE Alu 87 310 -2 1973 148 0 0 chr1 29980027 29980329 -252213335 + AluJb SINE Alu 5 306 0 186 247 240 68 chr1 29980329 29980475 -252213189 + L2 LINE L2 2737 2907 -407 586 246 15 0 chr1 29980483 29980612 -252213052 + MER2 DNA MER2_type 1 131 -214 268 170 0 0 chr1 29980612 29980659 -252213005 + Tigger1 DNA MER2_type 1 47 -2371 1856 156 0 7 chr1 29980660 29980955 -252212709 - AluJo SINE Alu -19 293 1 2483 57 0 0 chr1 29980985 29981283 -252212381 + AluY SINE Alu 1 298 -13 2409 91 0 0 chr1 29981920 29982228 -252211436 - AluSc SINE Alu -1 308 1 665 139 0 70 chr1 29982861 29982976 -252210688 - FLAM_C SINE Alu -35 108 2 2431 78 5 101 chr1 29982977 29983055 -252210609 + Tigger1 DNA MER2_type 1442 1526 -892 2171 129 0 13 chr1 29983055 29983366 -252210298 - AluSx SINE Alu -5 307 1 2431 78 5 101 chr1 29983366 29983725 -252209939 + Tigger1 DNA MER2_type 1526 1837 -581 1295 178 9 9 chr1 29983725 29983944 -252209720 - AluSx SINE Alu -93 219 1 928 117 0 0 chr1 29983944 29984081 -252209583 + Tigger1 DNA MER2_type 1823 1959 -459 1717 147 14 35 chr1 29984081 29984366 -252209298 - AluJb SINE Alu -10 302 24 2576 77 3 0 chr1 29984398 29984710 -252208954 - AluSp SINE Alu 0 313 1 1257 57 0 0 chr1 29984710 29984869 -252208795 - L1P5 LINE L1 -364 5787 5629 223 191 0 111 chr1 29984869 29984932 -252208732 + L2 LINE L2 3037 3092 -180 215 244 35 70 chr1 29985003 29985089 -252208575 + MIR SINE MIR 13 95 -167 302 244 13 13 chr1 29985339 29985417 -252208247 + MLT1K LTR MaLR 149 226 -362 2356 98 3 0 chr1 29985536 29985841 -252207823 + AluSq SINE Alu 1 306 -7 534 216 317 5 chr1 29985858 29986057 -252207607 + MLT1K LTR MaLR 328 588 0 721 206 0 8 chr1 29986082 29986208 -252207456 + FLAM_A SINE Alu 1 125 -8 426 204 83 83 chr1 29986234 29986299 -252207365 + MLT1L LTR MaLR 397 461 -154 2264 115 0 0 chr1 29986299 29986594 -252207070 + AluSx SINE Alu 1 295 -17 426 204 83 83 chr1 29986594 29986685 -252206979 + MLT1L LTR MaLR 460 553 -62 256 146 0 0 chr1 29986713 29986754 -252206910 - U6 snRNA snRNA -2 105 65 517 126 0 58 chr1 29986754 29986841 -252206823 + AluSg/x SINE Alu 211 292 -20 673 111 178 72 chr1 29986847 29986892 -252206772 - L1MB7 LINE L1 -20 6164 6125 1986 157 0 19 chr1 29986892 29987205 -252206459 - AluJb SINE Alu -1 311 5 673 111 178 72 chr1 29987205 29987339 -252206325 - L1MB7 LINE L1 -59 6125 5966 791 219 70 0 chr1 29987347 29987575 -252206089 - L1M4 LINE L1 -2073 4073 3830 2210 134 0 13 chr1 29987726 29988040 -252205624 - AluSx SINE Alu -2 310 1 1571 182 24 156 chr1 29988078 29988410 -252205254 + MER34 LTR ERV1 1 375 -167 2270 105 17 0 chr1 29988410 29988705 -252204959 - AluSq SINE Alu -13 300 1 1571 182 24 156 chr1 29988705 29988941 -252204723 + MER34 LTR ERV1 375 483 -59 2506 94 0 0 chr1 29988941 29989250 -252204414 + AluSx SINE Alu 1 309 -3 1571 182 24 156 chr1 29989250 29989301 -252204363 + MER34 LTR ERV1 483 539 -3 1044 145 45 0 chr1 29989959 29990138 -252203526 + MER5A DNA MER1_type 1 187 -2 449 234 0 24 chr1 29990193 29990317 -252203347 + LTR67 LTR ERVL 434 554 -3 186 43 0 0 chr1 29990733 29990756 -252202908 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 868 212 0 0 chr1 29990758 29990904 -252202760 - AluJo/FRAM SINE Alu -19 283 138 1191 183 89 0 chr1 29990904 29991117 -252202547 - AluJb SINE Alu -76 236 5 515 267 147 77 chr1 29991228 29991617 -252202047 - MLT1J LTR MaLR -95 416 1 457 226 8 75 chr1 29991641 29991774 -252201890 - MER102b DNA MER1_type 0 341 218 383 242 153 68 chr1 29991900 29992148 -252201516 + MLT1L LTR MaLR 192 460 -155 2097 150 0 3 chr1 29992556 29992869 -252200795 - AluSx SINE Alu 0 312 1 2079 90 0 59 chr1 29993174 29993463 -252200201 + AluSg SINE Alu 1 272 -38 296 188 35 238 chr1 29993476 29993646 -252200018 - L1ME LINE L1 -303 5818 5716 1888 122 45 10 chr1 29993646 29993934 -252199730 - AluSx SINE Alu -14 298 1 296 188 35 238 chr1 29993934 29994019 -252199645 - L1ME LINE L1 -405 5716 5615 185 351 40 0 chr1 29994155 29994229 -252199435 - L2 LINE L2 -93 3179 3103 1371 229 128 55 chr1 29994230 29994761 -252198903 + MLT1E LTR MaLR 1 567 0 625 225 73 53 chr1 29994994 29995145 -252198519 + MER69A DNA AcHobo 2 155 -22 286 309 21 0 chr1 29995272 29995366 -252198298 - L3b LINE CR1 -349 1234 1139 2269 112 3 3 chr1 29995368 29995681 -252197983 - AluSp SINE Alu 0 313 1 281 279 57 29 chr1 29996041 29996141 -252197523 - MIR SINE MIR -6 256 149 2179 113 0 25 chr1 29996141 29996459 -252197205 - AluSx SINE Alu -2 310 1 281 279 57 29 chr1 29996459 29996498 -252197166 - MIR SINE MIR -113 149 113 325 242 55 0 chr1 29996899 29996949 -252196715 - MIR SINE MIR 0 262 216 378 0 0 0 chr1 29996949 29996991 -252196673 + (CA)n Simple_repeat Simple_repeat 2 43 0 325 242 55 0 chr1 29996991 29997031 -252196633 - MIR SINE MIR -46 216 167 181 339 0 0 chr1 29997102 29997164 -252196500 + MIR SINE MIR 118 179 -83 273 284 72 82 chr1 29997588 29997782 -252195882 + MIR SINE MIR 33 224 -38 1993 135 13 26 chr1 29998300 29998612 -252195052 - AluJb SINE Alu -4 308 1 2427 86 0 0 chr1 29998668 29998960 -252194704 - AluSg SINE Alu -18 292 1 350 274 59 15 chr1 29998992 29999127 -252194537 - L1MC4 LINE L1 -371 7671 7531 1935 147 19 51 chr1 29999153 29999274 -252194390 - L1MB4 LINE L1 0 6180 6057 2442 82 7 0 chr1 29999274 29999568 -252194096 - AluSc SINE Alu -13 296 1 1935 147 19 51 chr1 29999568 29999820 -252193844 - L1MB4 LINE L1 -123 6057 5819 2309 107 3 0 chr1 29999830 30000129 -252193535 - AluSx SINE Alu -12 300 1 2610 47 0 0 chr1 30000633 30000930 -252192734 - AluY SINE Alu -14 297 1 1967 137 41 0 chr1 30001102 30001394 -252192270 - AluSq SINE Alu -9 304 1 2070 128 13 7 chr1 30001548 30001852 -252191812 - AluSx SINE Alu -6 306 1 184 182 0 0 chr1 30001865 30001898 -252191766 - MIR SINE MIR -115 147 115 2402 76 6 22 chr1 30001899 30002214 -252191450 + AluSp SINE Alu 1 310 -3 361 254 55 9 chr1 30002218 30002332 -252191332 - MIR SINE MIR -79 129 21 2136 142 0 0 chr1 30002453 30002755 -252190909 - AluSx SINE Alu -10 302 1 2245 94 3 17 chr1 30002839 30003137 -252190527 - AluSx SINE Alu -18 294 1 567 165 6 114 chr1 30003716 30003783 -252189881 - Charlie1 DNA MER1_type 0 2761 2719 2289 90 0 53 chr1 30003783 30004105 -252189559 + AluSx SINE Alu 1 305 -7 567 165 6 114 chr1 30004105 30004195 -252189469 - Charlie1 DNA MER1_type -42 2719 2621 * 1105 193 58 5 chr1 30004183 30004406 -252189258 - Charlie1 DNA MER1_type -2526 235 1 2057 104 14 0 chr1 30004437 30004716 -252188948 + AluSx SINE Alu 30 312 0 219 69 0 0 chr1 30004716 30004745 -252188919 + (GGAGAA)n Simple_repeat Simple_repeat 1 29 0 1837 147 44 3 chr1 30004802 30005095 -252188569 - AluSx SINE Alu -7 305 1 2204 113 0 0 chr1 30005147 30005458 -252188206 + AluSq SINE Alu 1 311 0 244 179 0 46 chr1 30005733 30005798 -252187866 + L2 LINE L2 3133 3234 -79 1401 182 6 88 chr1 30005802 30006132 -252187532 - AluJo SINE Alu -9 303 1 1896 239 108 6 chr1 30007780 30008281 -252185383 + MLT1H1 LTR MaLR 1 552 -3 2033 128 10 7 chr1 30008399 30008697 -252184967 - AluSx SINE Alu -12 300 2 3640 133 19 18 chr1 30009108 30009444 -252184220 - L1MB2 LINE L1 -4 6167 5828 2289 98 7 0 chr1 30009444 30009730 -252183934 - AluSc SINE Alu -19 290 3 3640 133 19 18 chr1 30009730 30010023 -252183641 - L1MB2 LINE L1 -343 5828 5537 1953 129 26 23 chr1 30010238 30010547 -252183117 - AluSx SINE Alu -2 310 1 2257 83 0 24 chr1 30010555 30010879 -252182785 - AluSc SINE Alu 0 317 1 1834 133 97 13 chr1 30010981 30011290 -252182374 + MER7A DNA MER2_type 2 334 -12 1064 248 166 24 chr1 30011435 30012011 -252181653 - L2 LINE L2 -5 3308 2599 2087 110 31 0 chr1 30012011 30012303 -252181361 + AluSx SINE Alu 1 301 -11 1064 248 166 24 chr1 30012303 30012467 -252181197 - L2 LINE L2 -714 2599 2460 750 168 87 38 chr1 30012469 30012663 -252181001 + MER69 DNA AcHobo 2205 2461 -65 1162 131 145 102 chr1 30012663 30012946 -252180718 - AluJo SINE Alu -7 295 1 750 168 87 38 chr1 30012946 30013016 -252180648 + MER69 DNA AcHobo 2461 2526 0 2131 85 21 3 chr1 30013160 30013443 -252180221 + AluSx SINE Alu 14 301 -11 2635 37 3 0 chr1 30013448 30013745 -252179919 + AluSp SINE Alu 5 302 -11 1436 163 133 4 chr1 30016271 30016535 -252177129 + AluJo SINE Alu 1 298 -14 252 0 0 0 chr1 30016966 30016994 -252176670 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 205 247 10 31 chr1 30017147 30017244 -252176420 + T-rich Low_complexity Low_complexity 1 95 0 183 42 0 0 chr1 30017271 30017295 -252176369 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1613 164 11 4 chr1 30017316 30017578 -252176086 - AluJb SINE Alu -40 272 9 2078 93 7 4 chr1 30017877 30018157 -252175507 + AluSx SINE Alu 32 312 0 360 0 0 0 chr1 30018158 30018198 -252175466 + (TA)n Simple_repeat Simple_repeat 2 41 0 889 171 38 67 chr1 30019113 30019220 -252174444 - MIR SINE MIR 0 262 153 2424 85 0 0 chr1 30019220 30019515 -252174149 - AluSg SINE Alu -15 295 1 889 171 38 67 chr1 30019515 30019647 -252174017 - MIR SINE MIR -109 153 30 2364 73 3 22 chr1 30021698 30022011 -252171653 + AluSq SINE Alu 1 307 -6 676 147 29 143 chr1 30022101 30022273 -252171391 + MER112 DNA MER1_type 2 141 -119 1916 141 0 44 chr1 30022273 30022592 -252171072 - AluJb SINE Alu -7 305 1 676 147 29 143 chr1 30022592 30022657 -252171007 + MER112 DNA MER1_type 141 212 -48 1007 97 0 15 chr1 30022825 30022959 -252170705 + FLAM_C SINE Alu 1 132 -1 386 154 0 0 chr1 30023586 30023651 -252170013 - MIR SINE MIR -10 252 188 690 225 39 28 chr1 30023858 30024040 -252169624 + MIR SINE MIR 14 197 -65 1069 154 17 11 chr1 30024042 30024217 -252169447 + AluSg/x SINE Alu 133 308 -4 319 229 0 0 chr1 30024218 30024288 -252169376 + MIR SINE MIR 191 260 -2 21 0 0 0 chr1 30024644 30024665 -252168999 + AT_rich Low_complexity Low_complexity 1 21 0 2334 88 7 7 chr1 30025355 30025650 -252168014 + AluSx SINE Alu 7 301 -11 2443 85 3 3 chr1 30025714 30026021 -252167643 + AluSp SINE Alu 1 307 -6 192 179 0 0 chr1 30026050 30026089 -252167575 + T-rich Low_complexity Low_complexity 1 39 0 2501 73 3 0 chr1 30026775 30027078 -252166586 - AluSp SINE Alu -9 304 1 878 204 0 0 chr1 30027105 30027252 -252166412 - FRAM SINE Alu -15 161 15 1108 118 7 0 chr1 30027309 30027461 -252166203 + AluSx SINE Alu 1 153 -159 2339 112 0 13 chr1 30028056 30028233 -252165431 - AluSq SINE Alu -3 310 137 1954 157 0 7 chr1 30028233 30028533 -252165131 - AluSx SINE Alu -14 298 1 2339 112 0 13 chr1 30028533 30028669 -252164995 - AluSq SINE Alu -176 137 1 402 146 135 0 chr1 30028670 30028766 -252164898 + L1ME1 LINE L1 6049 6157 -9 324 190 51 38 chr1 30029282 30029361 -252164303 + MLT1B LTR MaLR 287 366 -24 2245 94 3 17 chr1 30030084 30030382 -252163282 + AluSx SINE Alu 1 294 -18 2284 128 0 0 chr1 30030466 30030779 -252162885 + AluSq SINE Alu 1 313 0 1687 147 14 35 chr1 30030811 30031096 -252162568 + AluJb SINE Alu 24 302 -10 983 117 0 0 chr1 30031096 30031233 -252162431 - Tigger1 DNA MER2_type -459 1959 1823 1271 178 9 9 chr1 30031233 30031452 -252162212 + AluSx SINE Alu 1 219 -93 2586 75 5 101 chr1 30031452 30031811 -252161853 - Tigger1 DNA MER2_type -581 1837 1526 2140 129 0 13 chr1 30031811 30032122 -252161542 + AluSx SINE Alu 1 307 -5 2586 75 5 101 chr1 30032122 30032200 -252161464 - Tigger1 DNA MER2_type -892 1526 1442 634 139 0 70 chr1 30032201 30032316 -252161348 + FLAM_C SINE Alu 2 108 -35 385 299 47 97 chr1 30033026 30033427 -252160237 + L2 LINE L2 2871 3251 -21 204 97 0 0 chr1 30033430 30033461 -252160203 + (TTG)n Simple_repeat Simple_repeat 2 32 0 306 208 40 28 chr1 30033492 30033591 -252160073 + MIR SINE MIR 68 167 -41 320 291 146 48 chr1 30033757 30034052 -252159612 + L2 LINE L2 2432 2755 -559 220 240 13 80 chr1 30034119 30034194 -252159470 - MIR SINE MIR -99 163 94 195 226 19 0 chr1 30034298 30034351 -252159313 + L2 LINE L2 2920 2973 -299 444 250 65 18 chr1 30034869 30035037 -252158627 + HERVL LTR ERVL 4669 4844 -810 317 295 33 41 chr1 30035161 30035283 -252158381 + HERVL LTR ERVL 5038 5158 -496 293 302 11 44 chr1 30036009 30036191 -252157473 + CT-rich Low_complexity Low_complexity 1 176 0 270 291 159 33 chr1 30037517 30037668 -252155996 - LTR67 LTR ERVL -32 525 356 990 100 0 14 chr1 30037876 30037889 -252155775 - L1PA10 LINE L1 -9 6159 6147 198 0 0 0 chr1 30037889 30037911 -252155753 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 990 100 0 14 chr1 30037911 30038037 -252155627 - L1PA10 LINE L1 -21 6147 6022 329 216 72 45 chr1 30038625 30038736 -252154928 + L2 LINE L2 3159 3272 0 574 285 6 13 chr1 30038806 30038964 -252154700 + MER5B DNA MER1_type 1 157 -21 347 309 78 37 chr1 30039035 30039252 -252154412 + L2 LINE L2 2839 3064 -208 297 265 8 76 chr1 30039648 30039780 -252153884 - MIR SINE MIR -112 150 28 529 276 67 91 chr1 30039804 30040014 -252153650 + L2 LINE L2 3068 3272 0 1591 116 167 8 chr1 30040350 30040608 -252153056 - AluSg SINE Alu -1 299 1 4602 218 30 36 chr1 30041314 30042420 -252151244 + L1M4 LINE L1 107 1205 -5337 405 157 0 0 chr1 30042457 30042527 -252151137 + FAM SINE Alu 111 180 -5 269 130 0 0 chr1 30042527 30042573 -252151091 + L1M4 LINE L1 1203 1248 -5298 481 230 40 0 chr1 30042587 30042687 -252150977 - MLT1B LTR MaLR 0 390 287 2783 170 77 66 chr1 30043203 30043301 -252150363 - L1ME1 LINE L1 -9 6157 6062 2279 110 0 13 chr1 30043301 30043437 -252150227 + AluSx SINE Alu 1 137 -175 1987 150 0 7 chr1 30043437 30043737 -252149927 + AluSx SINE Alu 1 298 -14 2279 110 0 13 chr1 30043737 30043908 -252149756 + AluSx SINE Alu 137 304 -8 225 0 0 0 chr1 30043908 30043933 -252149731 + (TA)n Simple_repeat Simple_repeat 2 26 0 2783 170 77 66 chr1 30043933 30044545 -252149119 - L1ME1 LINE L1 -103 6063 5438 560 181 0 0 chr1 30044675 30044780 -252148884 - L1MD3 LINE L1 -160 7835 7731 2161 121 0 3 chr1 30045813 30046111 -252147553 + AluSx SINE Alu 1 297 -15 2248 96 3 7 chr1 30046457 30046758 -252146906 - AluSx SINE Alu -12 300 1 1246 205 198 36 chr1 30046894 30047308 -252146356 - MLT1D LTR MaLR 0 505 25 185 248 10 30 chr1 30047366 30047467 -252146197 + CT-rich Low_complexity Low_complexity 6 104 0 399 150 230 26 chr1 30047472 30047585 -252146079 - FAM SINE Alu 0 175 40 1676 122 12 4 chr1 30047627 30047872 -252145792 + AluSx SINE Alu 1 247 -65 207 0 0 0 chr1 30047882 30047905 -252145759 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1962 135 9 31 chr1 30047932 30048251 -252145413 + AluSx SINE Alu 1 312 0 336 185 87 54 chr1 30048379 30048471 -252145193 + MER57A LTR ERV1 295 389 -14 23 0 0 0 chr1 30048553 30048576 -252145088 + AT_rich Low_complexity Low_complexity 1 23 0 2171 71 18 11 chr1 30048685 30048966 -252144698 - AluSq SINE Alu -14 299 17 206 333 120 0 chr1 30049036 30049153 -252144511 + MIR3 SINE MIR 35 165 -43 22 0 0 0 chr1 30050461 30050483 -252143181 + AT_rich Low_complexity Low_complexity 1 22 0 568 121 26 43 chr1 30050645 30050704 -252142960 - L1MB4 LINE L1 0 6180 6122 3115 176 66 43 chr1 30050704 30051010 -252142654 + MER44D DNA MER2_type 3 301 -2186 2263 89 7 20 chr1 30051010 30051313 -252142351 - AluSg SINE Alu -11 299 1 3115 176 66 43 chr1 30051313 30051475 -252142189 + MER44D DNA MER2_type 301 367 -2120 2200 91 35 0 chr1 30051475 30051762 -252141902 + AluSc SINE Alu 1 297 -12 3115 176 66 43 chr1 30051762 30052007 -252141657 + MER44D DNA MER2_type 367 605 0 568 121 26 43 chr1 30052007 30052063 -252141601 - L1MB4 LINE L1 -58 6122 6067 426 288 25 66 chr1 30052100 30052249 -252141415 + MIR SINE MIR 67 208 -54 877 149 0 8 chr1 30052249 30052383 -252141281 + FLAM_A SINE Alu 1 133 0 426 288 25 66 chr1 30052383 30052431 -252141233 + MIR SINE MIR 208 256 -6 227 114 23 0 chr1 30052588 30052632 -252141032 - Alu SINE Alu -4 295 251 183 42 0 0 chr1 30052633 30052657 -252141007 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr1 30052656 30052676 -252140988 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1958 146 30 0 chr1 30053388 30053683 -252139981 + AluSx SINE Alu 1 304 -8 40 0 0 0 chr1 30053705 30053745 -252139919 + AT_rich Low_complexity Low_complexity 1 40 0 1989 127 10 36 chr1 30054010 30054317 -252139347 - AluSx SINE Alu -13 299 1 324 0 0 0 chr1 30054342 30054378 -252139286 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr1 30054980 30055009 -252138655 + AT_rich Low_complexity Low_complexity 1 29 0 2606 49 0 0 chr1 30055139 30055444 -252138220 + AluY SINE Alu 3 307 -4 2206 96 0 0 chr1 30056001 30056302 -252137362 - AluSc SINE Alu 0 301 1 2159 98 7 0 chr1 30057035 30057320 -252136344 + AluSx SINE Alu 19 305 -7 22 70 0 0 chr1 30059486 30059529 -252134135 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr1 30059872 30059904 -252133760 + AT_rich Low_complexity Low_complexity 1 32 0 1120 237 42 48 chr1 30060530 30060885 -252132779 - MER74B LTR ERVL -59 563 211 336 151 0 0 chr1 30060921 30060974 -252132690 - MER74B LTR ERVL -569 53 1 2298 104 0 13 chr1 30061265 30061573 -252132091 + AluSx SINE Alu 1 304 -8 363 357 21 14 chr1 30061966 30062106 -252131558 - L3 LINE CR1 -1229 348 208 1360 152 44 12 chr1 30062167 30062417 -252131247 - AluJb SINE Alu -12 300 43 229 350 0 38 chr1 30062422 30062502 -252131162 - L3 LINE CR1 -1413 164 88 249 242 65 0 chr1 30063431 30063493 -252130171 - MIR SINE MIR -89 173 108 534 210 7 14 chr1 30063703 30063841 -252129823 - L1MB7 LINE L1 0 6184 6048 1481 181 4 0 chr1 30063857 30064105 -252129559 - AluJo SINE Alu -5 307 59 2069 100 0 0 chr1 30064105 30064374 -252129290 - AluSg1 SINE Alu -40 269 1 2919 189 53 42 chr1 30064405 30064732 -252128932 - L1M4 LINE L1 -1100 5046 4724 2052 120 23 7 chr1 30064732 30065032 -252128632 + AluSx SINE Alu 1 305 -7 2919 189 53 42 chr1 30065032 30065325 -252128339 - L1M4 LINE L1 -1422 4724 4410 2084 118 4 0 chr1 30065325 30065630 -252128034 - AluSx SINE Alu 0 306 1 2919 189 53 42 chr1 30065630 30065862 -252127802 - L1M4 LINE L1 -1736 4410 4182 185 0 40 0 chr1 30066337 30066362 -252127302 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1936 135 0 30 chr1 30066534 30066860 -252126804 + AluSx SINE Alu 1 317 0 673 225 0 52 chr1 30067261 30067434 -252126230 - L1MC3 LINE L1 -1459 6326 6163 353 296 74 17 chr1 30067436 30067612 -252126052 - L1M4 LINE L1 -953 5193 5008 288 348 11 0 chr1 30068862 30068951 -252124713 - L2 LINE L2 -2 3270 3181 2520 59 0 3 chr1 30069098 30069403 -252124261 + AluY SINE Alu 2 305 -6 263 360 54 11 chr1 30069503 30069689 -252123975 + L2 LINE L2 820 1013 -2301 1376 126 20 0 chr1 30069694 30069892 -252123772 + AluSg/x SINE Alu 92 293 -19 1517 166 60 33 chr1 30069903 30070205 -252123459 + AluJo SINE Alu 1 310 -2 903 307 123 22 chr1 30070221 30070758 -252122906 + L2 LINE L2 1039 1629 -1685 2168 142 72 2 chr1 30070759 30071161 -252122503 - L1MB3 LINE L1 -1 6182 5753 230 346 47 9 chr1 30071667 30071774 -252121890 - MER5A DNA MER1_type -67 122 1 2004 141 7 0 chr1 30071965 30072263 -252121401 + AluJb SINE Alu 1 300 -12 871 257 60 16 chr1 30072578 30072827 -252120837 - MIR SINE MIR -1 261 2 243 0 0 0 chr1 30073164 30073191 -252120473 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2101 129 0 0 chr1 30073193 30073480 -252120184 - AluSx SINE Alu -25 287 1 449 186 0 0 chr1 30073602 30073688 -252119976 + L1MA7 LINE L1 6066 6151 -140 270 26 0 0 chr1 30073728 30073766 -252119898 + L1MA7 LINE L1 6225 6262 -29 2439 79 0 0 chr1 30073895 30074187 -252119477 + AluSg SINE Alu 3 294 -16 611 253 43 43 chr1 30074873 30075059 -252118605 - MER5A DNA MER1_type -2 187 2 723 176 0 0 chr1 30075228 30075347 -252118317 + FLAM_C SINE Alu 3 121 -22 212 0 36 0 chr1 30075347 30075375 -252118289 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1397 103 0 0 chr1 30075456 30075641 -252118023 - AluSg/x SINE Alu -3 307 123 2232 125 0 0 chr1 30075641 30075954 -252117710 - AluSq SINE Alu 0 313 1 978 282 249 47 chr1 30075956 30076896 -252116768 + L2 LINE L2 1494 2623 -691 24 77 0 0 chr1 30078252 30078304 -252115360 + AT_rich Low_complexity Low_complexity 1 52 0 2152 102 26 13 chr1 30078572 30078876 -252114788 - AluSq SINE Alu -5 308 1 243 167 0 37 chr1 30079032 30079086 -252114578 + L1MC4a LINE L1 5886 5937 -1871 21 36 0 0 chr1 30079269 30079297 -252114367 + AT_rich Low_complexity Low_complexity 1 28 0 255 325 193 28 chr1 30079669 30080093 -252113571 + L2 LINE L2 2483 2976 -338 2262 102 0 0 chr1 30080922 30081216 -252112448 + AluSx SINE Alu 1 294 -18 23 86 0 0 chr1 30082189 30082247 -252111417 + AT_rich Low_complexity Low_complexity 1 58 0 1069 123 13 0 chr1 30082969 30083124 -252110540 - AluSx SINE Alu -155 157 1 1727 99 8 36 chr1 30083130 30083410 -252110254 + AluSx SINE Alu 54 312 0 499 210 142 45 chr1 30083993 30084169 -252109495 - MIR SINE MIR -53 209 17 745 283 92 0 chr1 30084506 30084789 -252108875 + L1ME4a LINE L1 5579 5887 -234 2182 141 6 0 chr1 30084852 30085165 -252108499 + 7SLRNA srpRNA srpRNA 1 315 -5 1855 159 21 0 chr1 30086446 30086729 -252106935 + AluJb SINE Alu 1 289 -23 2209 110 3 10 chr1 30087138 30087439 -252106225 + AluSq SINE Alu 1 299 -14 583 131 12 0 chr1 30087951 30088035 -252105629 - AluJ/FLAM SINE Alu -226 86 2 220 353 86 9 chr1 30088200 30088316 -252105348 - L2 LINE L2 -5 3267 3143 713 204 13 25 chr1 30088347 30088504 -252105160 - MER5A DNA MER1_type 0 189 35 419 239 154 34 chr1 30088623 30088740 -252104924 + MIR3 SINE MIR 37 167 -41 734 198 0 0 chr1 30089608 30089724 -252103940 + FLAM_C SINE Alu 2 117 -16 535 212 4 91 chr1 30090395 30090456 -252103208 - MLT1F1 LTR MaLR 0 654 589 2241 115 0 0 chr1 30090456 30090752 -252102912 + AluSx SINE Alu 1 296 -16 535 212 4 91 chr1 30090752 30090828 -252102836 - MLT1F1 LTR MaLR -65 589 426 185 65 32 0 chr1 30090842 30090873 -252102791 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 1243 190 23 31 chr1 30090916 30091174 -252102490 - AluSx SINE Alu -56 256 1 1790 166 0 35 chr1 30091187 30091506 -252102158 - AluJb SINE Alu -4 308 1 313 94 31 62 chr1 30091580 30091644 -252102020 - L1MB3 LINE L1 -13 6170 6109 1470 189 37 37 chr1 30091648 30091944 -252101720 - AluJo SINE Alu -16 296 1 1652 134 53 4 chr1 30091966 30092212 -252101452 - AluSx SINE Alu -54 258 1 1150 204 170 1 chr1 30092217 30092582 -252101082 - MLT1F1 LTR MaLR -116 426 1 22 0 0 0 chr1 30093031 30093053 -252100611 + AT_rich Low_complexity Low_complexity 1 22 0 403 326 41 51 chr1 30093763 30093959 -252099705 - MIR3 SINE MIR -9 199 6 2246 133 8 51 chr1 30094074 30094426 -252099238 + MER1B DNA MER1_type 1 337 0 203 258 152 0 chr1 30095516 30095582 -252098082 + MER5C DNA MER1_type 1 76 -248 2279 111 0 0 chr1 30095778 30096075 -252097589 + AluSg1 SINE Alu 2 298 -11 180 111 0 0 chr1 30096668 30096695 -252096969 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 30097824 30097845 -252095819 + AT_rich Low_complexity Low_complexity 1 21 0 266 294 192 7 chr1 30098106 30098252 -252095412 - MIR SINE MIR -22 240 68 1457 176 24 41 chr1 30098412 30098707 -252094957 + AluJo SINE Alu 1 290 -22 1284 83 0 0 chr1 30098721 30098877 -252094787 + AluY SINE Alu 126 281 -30 491 185 0 0 chr1 30098886 30098967 -252094697 + L1MB2 LINE L1 5487 5567 -604 597 185 0 0 chr1 30098971 30099063 -252094601 + FLAM_A SINE Alu 5 96 -46 2480 171 44 17 chr1 30099100 30099580 -252094084 + L1MB2 LINE L1 5636 6128 -43 2169 109 0 0 chr1 30099580 30099865 -252093799 + AluY SINE Alu 1 285 -26 2248 93 7 0 chr1 30099885 30100174 -252093490 + AluSx SINE Alu 1 291 -21 431 211 0 11 chr1 30100761 30100851 -252092813 - AluS SINE Alu -223 90 2 307 293 71 0 chr1 30100937 30101036 -252092628 + MIR SINE MIR 40 145 -63 2140 128 0 0 chr1 30101054 30101352 -252092312 + AluSx SINE Alu 1 298 -14 939 195 82 170 chr1 30101352 30101557 -252092107 - L2 LINE L2 -1140 2174 1953 1430 182 45 52 chr1 30101557 30101848 -252091816 + AluJb SINE Alu 1 289 -23 939 195 82 170 chr1 30101848 30102236 -252091428 - L2 LINE L2 -1361 1953 1633 340 162 135 14 chr1 30102248 30102322 -252091342 - L2 LINE L2 -33 3280 3198 627 285 81 71 chr1 30102323 30102616 -252091048 + L1ME LINE L1 4903 5192 -970 1585 138 21 50 chr1 30102616 30102899 -252090765 + AluJb SINE Alu 14 288 -24 627 285 81 71 chr1 30102899 30102982 -252090682 + L1ME LINE L1 5192 5273 -889 2181 110 7 0 chr1 30102982 30103274 -252090390 + AluSx SINE Alu 2 295 -17 627 285 81 71 chr1 30103274 30103651 -252090013 + L1ME LINE L1 5273 5665 -497 1119 184 85 33 chr1 30103651 30103863 -252089801 + MER58A DNA MER1_type 1 223 -1 627 285 81 71 chr1 30103863 30104019 -252089645 + L1ME LINE L1 5665 5818 -344 1505 191 0 53 chr1 30104239 30104387 -252089277 + AluJo SINE Alu 1 126 -186 2020 123 31 0 chr1 30104387 30104679 -252088985 + AluSx SINE Alu 1 301 -11 1505 191 0 53 chr1 30104679 30104833 -252088831 + AluJo SINE Alu 126 287 -25 1139 164 82 5 chr1 30104897 30105104 -252088560 - AluJb SINE Alu -6 306 84 1680 176 0 35 chr1 30105616 30105929 -252087735 - AluJb SINE Alu -10 302 1 218 320 60 0 chr1 30106591 30106691 -252086973 - MIR3 SINE MIR -10 198 93 531 222 37 30 chr1 30106811 30106946 -252086718 + MER91B DNA MER1_type 55 190 0 246 247 154 14 chr1 30107522 30107618 -252086046 + MIR SINE MIR 2 111 -97 2345 68 10 0 chr1 30107708 30108004 -252085660 - AluSp SINE Alu -14 299 1 2317 107 3 0 chr1 30108808 30109117 -252084547 - AluSg SINE Alu 0 310 1 222 227 213 0 chr1 30109174 30109249 -252084415 + MIR SINE MIR 53 143 -119 1475 94 0 0 chr1 30109668 30109849 -252083815 + AluSx SINE Alu 1 181 -131 602 309 67 51 chr1 30109990 30110214 -252083450 - L3 LINE CR1 -21 1556 1324 2269 123 0 0 chr1 30110214 30110523 -252083141 - AluSx SINE Alu -3 309 1 602 309 67 51 chr1 30110523 30110612 -252083052 - L3 LINE CR1 -253 1324 1238 725 147 9 0 chr1 30110782 30110891 -252082773 + AluSx SINE Alu 188 297 -15 25 0 0 0 chr1 30110891 30110916 -252082748 + AT_rich Low_complexity Low_complexity 1 25 0 2540 57 3 0 chr1 30110917 30111213 -252082451 + AluY SINE Alu 1 297 -14 2000 153 3 3 chr1 30111221 30111522 -252082142 + AluJo SINE Alu 3 303 -9 251 337 42 11 chr1 30111522 30111617 -252082047 - L3 LINE CR1 -481 1096 999 834 167 0 8 chr1 30111762 30111894 -252081770 + FRAM SINE Alu 20 150 -26 206 274 48 0 chr1 30111974 30112036 -252081628 - MIR SINE MIR -40 222 158 690 149 0 0 chr1 30112311 30112445 -252081219 + (TC)n Simple_repeat Simple_repeat 2 135 0 740 175 0 0 chr1 30113661 30113775 -252079889 - AluJb SINE Alu -197 115 2 1470 155 19 4 chr1 30115489 30115747 -252077917 + AluSg SINE Alu 37 298 -12 935 196 131 16 chr1 30115747 30115992 -252077672 + MER44D DNA MER2_type 461 605 0 344 164 0 6 chr1 30115992 30116056 -252077608 - L1MB4 LINE L1 -51 6123 6063 403 288 25 66 chr1 30116085 30116234 -252077430 + MIR SINE MIR 67 208 -54 939 149 0 8 chr1 30116234 30116368 -252077296 + FLAM_A SINE Alu 1 133 0 403 288 25 66 chr1 30116368 30116416 -252077248 + MIR SINE MIR 208 256 -6 262 91 23 0 chr1 30116573 30116617 -252077047 - AluSc SINE Alu -4 295 251 21 0 0 0 chr1 30116618 30116639 -252077025 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 30116639 30116659 -252077005 + (GA)n Simple_repeat Simple_repeat 2 21 0 1988 145 30 0 chr1 30117371 30117668 -252075996 + AluSx SINE Alu 1 306 -6 40 0 0 0 chr1 30117690 30117730 -252075934 + AT_rich Low_complexity Low_complexity 1 40 0 1935 134 13 36 chr1 30117995 30118302 -252075362 - AluSx SINE Alu -12 300 1 288 0 0 0 chr1 30118327 30118359 -252075305 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr1 30118961 30118990 -252074674 + AT_rich Low_complexity Low_complexity 1 29 0 2637 52 0 0 chr1 30119118 30119426 -252074238 + AluY SINE Alu 1 308 -3 2220 96 0 0 chr1 30119983 30120284 -252073380 - AluSc SINE Alu 0 301 1 2175 98 7 0 chr1 30121017 30121302 -252072362 + AluSx SINE Alu 19 305 -7 1074 202 47 0 chr1 30123016 30123209 -252070455 + AluJo SINE Alu 9 210 -102 180 0 0 0 chr1 30123233 30123253 -252070411 + (CAA)n Simple_repeat Simple_repeat 2 21 0 773 194 0 22 chr1 30123311 30123445 -252070219 + FLAM_C SINE Alu 1 131 -2 331 267 8 15 chr1 30123478 30123609 -252070055 + L1ME4a LINE L1 5990 6119 -2 249 236 28 14 chr1 30125225 30125297 -252068367 + CT-rich Low_complexity Low_complexity 5 77 0 1852 164 7 10 chr1 30125395 30125694 -252067970 - AluJb SINE Alu -14 298 1 2321 88 7 10 chr1 30125969 30126277 -252067387 + AluSp SINE Alu 1 307 -6 603 289 122 10 chr1 30126407 30126604 -252067060 - MIR SINE MIR -13 249 31 25 0 0 0 chr1 30127342 30127367 -252066297 + AT_rich Low_complexity Low_complexity 1 25 0 865 106 8 0 chr1 30127367 30127490 -252066174 - AluSg/x SINE Alu -26 286 163 2263 110 0 0 chr1 30127619 30127919 -252065745 - AluSx SINE Alu -12 300 1 222 253 287 11 chr1 30128112 30128199 -252065465 - MIR SINE MIR -82 126 16 24 32 0 0 chr1 30128467 30128498 -252065166 + AT_rich Low_complexity Low_complexity 1 31 0 2496 80 0 0 chr1 30129161 30129462 -252064202 - AluY SINE Alu -10 301 1 25 0 0 0 chr1 30129531 30129556 -252064108 + AT_rich Low_complexity Low_complexity 1 25 0 2220 128 0 0 chr1 30129561 30129873 -252063791 - AluSx SINE Alu 0 312 1 1062 147 54 5 chr1 30129873 30130057 -252063607 - L1MC2 LINE L1 -15 6329 6137 5621 150 63 40 chr1 30130057 30130895 -252062769 - L1MC3 LINE L1 -191 7594 6722 1450 125 0 10 chr1 30130895 30131103 -252062561 + AluJb SINE Alu 85 290 -22 5621 150 63 40 chr1 30131103 30131373 -252062291 - L1MC3 LINE L1 -1063 6722 6460 2413 73 0 0 chr1 30131380 30131667 -252061997 + AluY SINE Alu 1 287 -24 286 226 86 32 chr1 30131684 30131777 -252061887 + L2 LINE L2 3216 3313 0 2198 116 0 3 chr1 30131923 30132225 -252061439 + AluSx SINE Alu 1 301 -11 663 301 150 31 chr1 30132271 30132719 -252060945 - L2 LINE L2 -8 3305 2805 359 24 0 0 chr1 30133111 30133152 -252060512 + (CA)n Simple_repeat Simple_repeat 1 41 0 422 219 53 86 chr1 30133285 30133436 -252060228 + L2 LINE L2 3168 3313 0 1970 108 30 20 chr1 30133818 30134114 -252059550 + AluSq SINE Alu 1 299 -14 2206 108 6 19 chr1 30134622 30134938 -252058726 - AluSx SINE Alu 0 312 1 205 218 18 36 chr1 30135053 30135108 -252058556 + MIR SINE MIR 92 145 -117 2148 138 3 3 chr1 30135594 30135906 -252057758 - AluSx SINE Alu 0 312 1 558 206 0 53 chr1 30136924 30137055 -252056609 + L2 LINE L2 3185 3308 -5 2202 112 3 19 chr1 30137262 30137574 -252056090 - AluSx SINE Alu -5 307 1 241 261 0 15 chr1 30137580 30137645 -252056019 - L2 LINE L2 0 3313 3250 893 84 0 0 chr1 30138266 30138385 -252055279 - AluY SINE Alu -5 306 188 424 226 39 0 chr1 30138948 30139050 -252054614 - L1MA10 LINE L1 0 6334 6229 2137 132 0 0 chr1 30139079 30139374 -252054290 - AluSx SINE Alu -17 295 1 1725 164 26 29 chr1 30139374 30139685 -252053979 - AluJo SINE Alu -2 310 1 2269 123 0 0 chr1 30139737 30140039 -252053625 - AluSx SINE Alu -10 302 1 595 228 157 62 chr1 30141552 30141890 -252051774 - L1MC5 LINE L1 -36 7925 7556 611 245 13 63 chr1 30141995 30142232 -252051432 - L1MC5 LINE L1 -393 7568 7344 1105 119 17 28 chr1 30142255 30142432 -252051232 + MER20 DNA MER1_type 44 218 -1 316 191 61 116 chr1 30142433 30142580 -252051084 - L1MC5 LINE L1 -624 7337 7199 1673 127 94 22 chr1 30143149 30143425 -252050239 + AluJo SINE Alu 1 296 -16 3469 226 109 116 chr1 30143811 30143841 -252049823 - L1M LINE L1 -814 5332 5303 4513 144 22 18 chr1 30143841 30144147 -252049517 - L1MB4 LINE L1 0 6180 5877 2018 106 44 0 chr1 30144147 30144450 -252049214 - AluSg SINE Alu 0 310 1 4513 144 22 18 chr1 30144450 30144908 -252048756 - L1MB4 LINE L1 -303 5877 5413 1945 89 0 0 chr1 30144908 30145143 -252048521 - AluSx SINE Alu -62 250 16 3469 226 109 116 chr1 30145143 30145404 -252048260 - L1M LINE L1 -842 5304 5043 189 74 0 0 chr1 30145404 30145431 -252048233 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3469 226 109 116 chr1 30145431 30146188 -252047476 - L1M LINE L1 -1103 5043 4282 2312 95 10 0 chr1 30146188 30146494 -252047170 + AluSg SINE Alu 1 309 -1 3469 226 109 116 chr1 30146494 30146580 -252047084 - L1M LINE L1 -1864 4282 4197 2101 110 36 32 chr1 30146580 30146889 -252046775 + AluSx SINE Alu 1 310 -2 3469 226 109 116 chr1 30146889 30147006 -252046658 - L1M LINE L1 -1949 4197 4081 2163 114 0 3 chr1 30147006 30147305 -252046359 - AluSg SINE Alu -12 298 1 3469 226 109 116 chr1 30147305 30147609 -252046055 - L1M LINE L1 -2065 4081 3776 2291 111 0 0 chr1 30147609 30147906 -252045758 - AluSx SINE Alu -15 297 1 3469 226 109 116 chr1 30147906 30147990 -252045674 - L1M LINE L1 -2370 3776 3693 1741 173 0 13 chr1 30147990 30148297 -252045367 - AluJb SINE Alu -9 303 1 3469 226 109 116 chr1 30148297 30148556 -252045108 - L1M LINE L1 -2453 3693 3472 2503 82 0 13 chr1 30149929 30150245 -252043419 - AluSx SINE Alu 0 312 1 2235 83 0 24 chr1 30152077 30152407 -252041257 - AluSc SINE Alu 0 323 1 1838 136 97 13 chr1 30152509 30152818 -252040846 + MER7A DNA MER2_type 2 334 -12 1195 246 135 25 chr1 30152963 30153539 -252040125 - L2 LINE L2 -5 3308 2660 2185 113 0 0 chr1 30153539 30153850 -252039814 + AluSq SINE Alu 1 311 0 260 179 0 46 chr1 30154125 30154190 -252039474 + L2 LINE L2 3133 3234 -79 1397 182 6 88 chr1 30154194 30154524 -252039140 - AluJo SINE Alu -9 303 1 1900 241 108 6 chr1 30156172 30156673 -252036991 + MLT1H1 LTR MaLR 1 552 -3 2014 128 10 7 chr1 30156791 30157089 -252036575 - AluSx SINE Alu -12 300 2 3847 133 19 18 chr1 30157501 30157837 -252035827 - L1MB2 LINE L1 -4 6167 5828 2270 98 7 0 chr1 30157837 30158123 -252035541 - AluSc SINE Alu -19 290 3 3847 133 19 18 chr1 30158123 30158416 -252035248 - L1MB2 LINE L1 -343 5828 5537 1876 139 26 23 chr1 30158631 30158940 -252034724 - AluSx SINE Alu -2 310 1 2222 87 0 24 chr1 30158948 30159269 -252034395 - AluSc SINE Alu 0 314 1 1815 133 97 13 chr1 30159371 30159680 -252033984 + MER7A DNA MER2_type 2 334 -12 671 277 58 29 chr1 30210646 30210888 -251982776 - MIR SINE MIR 0 262 14 180 234 0 43 chr1 30210985 30211032 -251982632 + MIR SINE MIR 218 262 0 305 294 59 0 chr1 30211879 30211981 -251981683 + MIR3 SINE MIR 92 199 -9 189 287 226 0 chr1 30212845 30212960 -251980704 - MIR SINE MIR -74 188 48 521 346 97 5 chr1 30213413 30213630 -251980034 + MIR SINE MIR 2 238 -24 231 350 157 5 chr1 30213996 30214344 -251979320 - L2 LINE L2 -337 2977 2574 409 316 64 14 chr1 30214344 30214547 -251979117 + MIR SINE MIR 3 209 -53 2352 91 0 44 chr1 30215845 30216164 -251977500 - AluSq SINE Alu -8 305 1 2417 77 0 7 chr1 30216244 30216541 -251977123 - AluY SINE Alu -16 295 1 22 35 0 0 chr1 30216550 30216579 -251977085 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr1 30216601 30216630 -251977034 + AT_rich Low_complexity Low_complexity 1 29 0 2140 114 3 7 chr1 30216630 30216919 -251976745 + AluSx SINE Alu 1 288 -24 1586 140 79 19 chr1 30216923 30217188 -251976476 - AluJo SINE Alu -30 282 2 2145 94 42 3 chr1 30217224 30217511 -251976153 + AluSq SINE Alu 1 298 -15 1499 230 57 42 chr1 30218668 30219121 -251974543 + L1MC4 LINE L1 7462 7921 -121 839 129 0 50 chr1 30219225 30219365 -251974299 + FLAM_C SINE Alu 1 133 -10 1860 106 110 0 chr1 30219568 30219832 -251973832 - AluSx SINE Alu -9 303 11 443 257 119 43 chr1 30219849 30220059 -251973605 - MIR SINE MIR -32 230 5 2467 90 0 6 chr1 30220083 30220395 -251973269 + AluY SINE Alu 1 310 -1 226 336 116 30 chr1 30220469 30220701 -251972963 + L2 LINE L2 3018 3269 -3 481 151 16 54 chr1 30221690 30221875 -251971789 + CT-rich Low_complexity Low_complexity 2 179 0 1341 82 12 0 chr1 30221880 30222050 -251971614 + AluY SINE Alu 128 299 -12 845 227 6 0 chr1 30222059 30222231 -251971433 + FAM SINE Alu 1 173 -2 1880 156 0 20 chr1 30222566 30222861 -251970803 - AluJb SINE Alu -11 301 13 2646 157 38 2 chr1 30222893 30223397 -251970267 + L1MB3 LINE L1 5451 5972 -211 882 137 103 7 chr1 30223397 30223587 -251970077 + AluJb SINE Alu 125 328 0 995 171 5 0 chr1 30223607 30223794 -251969870 + L1MB3 LINE L1 5994 6181 -2 2162 132 0 23 chr1 30224247 30224551 -251969113 - AluSx SINE Alu -15 297 1 1950 146 17 10 chr1 30224554 30224856 -251968808 - AluSx SINE Alu -8 304 1 1182 151 11 113 chr1 30225071 30225270 -251968394 + MER8 DNA MER2_type 1 219 -20 2249 129 0 3 chr1 30225270 30225581 -251968083 + AluSg SINE Alu 1 310 0 2235 104 0 7 chr1 30225590 30225905 -251967759 + AluSx SINE Alu 1 313 0 1182 151 11 113 chr1 30225905 30225958 -251967706 + MER8 DNA MER2_type 227 238 -1 2906 7 0 0 chr1 30226013 30226318 -251967346 + AluYb8 SINE Alu 1 305 -13 840 157 16 32 chr1 30226451 30226625 -251967039 + MER69A DNA AcHobo 1 169 -8 1865 169 0 10 chr1 30226693 30226994 -251966670 - AluJb SINE Alu -11 301 4 559 146 0 0 chr1 30227416 30227505 -251966159 - AluJ/FLAM SINE Alu -213 99 11 426 277 8 8 chr1 30227643 30227762 -251965902 + MIR SINE MIR 31 149 -113 2373 88 13 10 chr1 30227765 30228073 -251965591 + AluSq SINE Alu 1 309 -4 733 139 0 0 chr1 30228095 30228217 -251965447 + FLAM_C SINE Alu 21 142 -1 1079 98 0 0 chr1 30228217 30228350 -251965314 + AluSq/x SINE Alu 1 133 -179 2263 115 3 0 chr1 30228355 30228650 -251965014 + AluSp SINE Alu 3 298 -15 1407 152 42 115 chr1 30228652 30228802 -251964862 + AluJo SINE Alu 1 116 -196 258 32 0 0 chr1 30228802 30228833 -251964831 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1407 152 42 115 chr1 30228833 30229012 -251964652 + AluJo SINE Alu 116 306 -6 566 121 9 60 chr1 30229268 30229384 -251964280 - FRAM SINE Alu -5 171 62 203 224 92 26 chr1 30229386 30229462 -251964202 - MIR SINE MIR -92 116 36 529 216 0 9 chr1 30229572 30229683 -251963981 + MIR SINE MIR 21 130 -132 246 234 0 0 chr1 30231024 30231088 -251962576 - AluJo SINE Alu -166 136 73 2383 80 3 10 chr1 30231233 30231534 -251962130 - AluSx SINE Alu -13 299 1 2420 96 3 0 chr1 30231640 30231943 -251961721 - AluSp SINE Alu -4 309 6 3092 101 15 19 chr1 30231957 30232432 -251961232 + LTR15 LTR ERV1 10 482 -11 1477 141 76 65 chr1 30232440 30232553 -251961111 - AluJb SINE Alu -46 266 156 2626 59 0 3 chr1 30232553 30232860 -251960804 - AluY SINE Alu -5 306 1 1477 141 76 65 chr1 30232860 30233009 -251960655 - AluJb SINE Alu -156 156 1 1717 169 3 29 chr1 30233009 30233188 -251960476 + L1MB2 LINE L1 5788 5955 -216 2301 118 0 0 chr1 30233188 30233492 -251960172 + AluSx SINE Alu 1 304 -8 1717 169 3 29 chr1 30233492 30233661 -251960003 + L1MB2 LINE L1 5955 6127 -44 2515 59 3 3 chr1 30233661 30233964 -251959700 + AluY SINE Alu 1 303 -8 243 132 26 0 chr1 30233970 30234008 -251959656 + MER4E LTR ERV1 653 691 -75 2199 113 7 0 chr1 30234036 30234329 -251959335 - AluSx SINE Alu -17 295 1 236 100 0 0 chr1 30234329 30234369 -251959295 + L1MB2 LINE L1 6125 6164 -7 2298 108 3 0 chr1 30234510 30234807 -251958857 - AluSp SINE Alu -15 298 1 348 279 44 44 chr1 30234882 30235018 -251958646 - MIR SINE MIR -70 192 57 1127 187 179 53 chr1 30235303 30235379 -251958285 - MSTC LTR MaLR 0 428 363 2466 93 0 0 chr1 30235379 30235680 -251957984 + AluSq SINE Alu 1 301 -12 1127 187 179 53 chr1 30235680 30235983 -251957681 - MSTC LTR MaLR -65 363 1 201 278 52 9 chr1 30237231 30237346 -251956318 + L2 LINE L2 2364 2483 -831 219 88 0 0 chr1 30237614 30237648 -251956016 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 993 122 14 0 chr1 30237665 30237804 -251955860 - AluJo SINE Alu -171 141 1 188 352 115 12 chr1 30237812 30238065 -251955599 + L2 LINE L2 2697 2975 -339 1085 73 7 7 chr1 30238078 30238214 -251955450 - AluSq/x SINE Alu -176 136 1 226 320 62 8 chr1 30238215 30238343 -251955321 + L2 LINE L2 2966 3100 -172 538 185 11 112 chr1 30238349 30238527 -251955137 - L2 LINE L2 0 3313 3154 1367 205 41 41 chr1 30238658 30238849 -251954815 - MER90 LTR ERV1 0 614 421 2098 144 7 0 chr1 30238849 30239147 -251954517 + AluSx SINE Alu 1 300 -12 1367 205 41 41 chr1 30239147 30239307 -251954357 - MER90 LTR ERV1 -192 422 263 788 169 59 156 chr1 30239307 30239547 -251954117 - MLT1B LTR MaLR 0 390 197 2385 97 3 6 chr1 30239547 30239858 -251953806 - AluSg SINE Alu 0 310 1 788 169 59 156 chr1 30239858 30239990 -251953674 - MLT1B LTR MaLR -193 197 54 1046 179 27 0 chr1 30240028 30240251 -251953413 - MER90 LTR ERV1 -346 229 1 286 279 167 41 chr1 30240499 30240768 -251952896 - L2 LINE L2 -1444 1870 1568 307 307 86 18 chr1 30241092 30241255 -251952409 + MIR SINE MIR 48 221 -41 1682 109 124 11 chr1 30241650 30241916 -251951748 - AluSg SINE Alu -14 296 1 225 0 0 0 chr1 30242192 30242217 -251951447 + (T)n Simple_repeat Simple_repeat 1 25 0 303 238 62 0 chr1 30242574 30242654 -251951010 + MIR3 SINE MIR 109 193 -15 2416 90 3 3 chr1 30243182 30243492 -251950172 + AluSx SINE Alu 1 310 -2 2456 98 0 0 chr1 30243586 30243891 -251949773 + AluSg SINE Alu 6 310 0 1040 103 0 0 chr1 30244005 30244141 -251949523 + AluSq/x SINE Alu 1 136 -176 374 245 140 7 chr1 30244182 30244325 -251949339 + MIR SINE MIR 30 191 -71 5625 59 2 74 chr1 30244450 30245244 -251948420 - SVA Other Other 0 1386 650 271 412 0 21 chr1 30245244 30245341 -251948323 + polypyrimidine Low_complexity Low_complexity 3 97 0 427 232 10 38 chr1 30245344 30245630 -251948034 + CT-rich Low_complexity Low_complexity 1 278 0 665 144 0 0 chr1 30245730 30245834 -251947830 + AluJb SINE Alu 194 297 -15 2402 107 0 0 chr1 30245861 30246171 -251947493 + AluSx SINE Alu 3 312 0 681 147 37 0 chr1 30246240 30246349 -251947315 + AluJo/FLAM SINE Alu 2 114 -198 2008 153 7 0 chr1 30246350 30246637 -251947027 - AluJb SINE Alu -22 290 2 732 203 0 0 chr1 30246645 30246773 -251946891 - AluJo SINE Alu -178 134 7 2145 130 3 10 chr1 30246803 30247104 -251946560 + AluJb SINE Alu 1 299 -13 224 186 0 0 chr1 30247110 30247153 -251946511 - MIR SINE MIR -205 57 15 201 220 20 0 chr1 30247935 30247985 -251945679 - L2 LINE L2 -263 3050 3000 412 314 39 20 chr1 30248235 30248388 -251945276 - MIR SINE MIR -66 196 41 2303 89 0 3 chr1 30248944 30249237 -251944427 + AluSp SINE Alu 19 310 -3 245 272 19 48 chr1 30249267 30249345 -251944319 + L2 LINE L2 3173 3249 -23 1576 172 20 17 chr1 30249345 30249647 -251944017 - AluJo SINE Alu -6 306 4 245 272 19 48 chr1 30249647 30249671 -251943993 + L2 LINE L2 3249 3272 0 219 317 54 58 chr1 30249761 30249966 -251943698 + L3 LINE CR1 1176 1379 -198 861 109 0 29 chr1 30251230 30251367 -251942297 - FLAM_C SINE Alu 0 133 1 230 247 11 90 chr1 30251571 30251660 -251942004 - L2 LINE L2 -69 3244 3163 1944 178 0 0 chr1 30252190 30252494 -251941170 - AluJo SINE Alu -8 304 1 280 213 117 43 chr1 30253221 30253315 -251940349 - MIR SINE MIR -112 150 50 332 331 23 15 chr1 30253353 30253483 -251940181 - L1MEc LINE L1 -4026 2370 2240 1862 165 13 0 chr1 30253501 30253804 -251939860 + AluSx SINE Alu 6 312 0 353 147 0 88 chr1 30253806 30253874 -251939790 + AluSg/x SINE Alu 133 194 -106 2249 92 7 3 chr1 30253974 30254269 -251939395 - AluSg SINE Alu -14 296 1 2164 97 3 24 chr1 30254675 30255000 -251938664 + AluSx SINE Alu 1 319 0 198 0 0 0 chr1 30255299 30255321 -251938343 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2053 126 14 3 chr1 30255321 30255607 -251938057 + AluSc SINE Alu 1 289 -20 2489 74 3 7 chr1 30255623 30255932 -251937732 - AluY SINE Alu -1 310 3 39 0 0 0 chr1 30255934 30255973 -251937691 + AT_rich Low_complexity Low_complexity 1 39 0 1324 178 20 66 chr1 30256293 30256597 -251937067 + AluJo SINE Alu 1 290 -22 786 191 12 24 chr1 30256688 30256856 -251936808 - MER4D LTR ERV1 -8 895 730 1358 161 134 27 chr1 30256956 30257217 -251936447 - AluJb SINE Alu -15 297 9 2348 92 7 0 chr1 30257231 30257523 -251936141 - AluSq SINE Alu -19 294 1 341 257 14 0 chr1 30257523 30257597 -251936067 - LTR39 LTR ERV1 -306 477 403 2171 122 7 0 chr1 30257597 30257893 -251935771 - AluSx SINE Alu -10 302 5 1664 126 60 0 chr1 30257954 30258223 -251935441 - MER49 LTR ERV1 -638 285 1 546 165 10 0 chr1 30258482 30258579 -251935085 + MSTB2 LTR MaLR 360 457 0 197 304 130 0 chr1 30258591 30258706 -251934958 + L2 LINE L2 2633 2762 -552 1022 205 90 26 chr1 30258920 30259232 -251934432 + L1MC5 LINE L1 7260 7591 -370 1310 82 20 41 chr1 30259314 30259509 -251934155 - AluSg/x SINE Alu -3 307 117 2449 93 3 0 chr1 30259540 30259852 -251933812 + AluSp SINE Alu 1 313 0 228 213 82 0 chr1 30259856 30259917 -251933747 + L1MC5 LINE L1 7701 7766 -195 1481 196 0 39 chr1 30259933 30260218 -251933446 + AluJo SINE Alu 1 274 -38 449 212 20 0 chr1 30260379 30260478 -251933186 + L1MC5 LINE L1 7805 7905 -56 214 306 0 0 chr1 30260515 30260577 -251933087 + L2 LINE L2 3025 3086 -186 730 321 97 16 chr1 30261250 30261633 -251932031 - L2 LINE L2 -4 3309 2896 21 0 0 0 chr1 30261808 30261829 -251931835 + AT_rich Low_complexity Low_complexity 1 21 0 188 156 0 44 chr1 30261919 30261964 -251931700 - MIR SINE MIR -157 105 63 241 357 200 0 chr1 30262540 30262680 -251930984 - MIR SINE MIR -6 256 89 2293 125 3 3 chr1 30263146 30263458 -251930206 + AluSx SINE Alu 1 312 0 548 39 0 0 chr1 30263979 30264056 -251929608 + AluSc SINE Alu 232 308 -1 1825 131 46 0 chr1 30264134 30264336 -251929328 - AluSg SINE Alu -14 296 76 2378 90 27 0 chr1 30264336 30264637 -251929027 - AluSq SINE Alu -4 309 1 1825 131 46 0 chr1 30264637 30264717 -251928947 - AluSg SINE Alu -234 76 1 506 310 22 22 chr1 30264981 30265165 -251928499 - MIR SINE MIR -77 185 2 2215 70 14 3 chr1 30265772 30266057 -251927607 + AluY SINE Alu 1 288 -23 3885 81 33 0 chr1 30266390 30266912 -251926752 - SVA Other Other -846 540 2 1621 118 32 20 chr1 30269308 30269554 -251924110 + AluSx SINE Alu 55 303 -9 2513 69 3 0 chr1 30269650 30269953 -251923711 - AluSp SINE Alu -9 304 1 723 196 146 5 chr1 30269986 30270185 -251923479 + L1ME1 LINE L1 5936 6162 -4 384 306 71 24 chr1 30270448 30270618 -251923046 - L3 LINE CR1 -77 1500 1323 2288 79 7 10 chr1 30270631 30270922 -251922742 - AluY SINE Alu -21 290 1 1703 113 0 0 chr1 30271300 30271522 -251922142 - AluSc SINE Alu -17 292 71 2490 87 0 0 chr1 30271522 30271818 -251921846 - AluSx SINE Alu -14 298 1 534 127 0 0 chr1 30271818 30271897 -251921767 - AluSc SINE Alu -229 80 2 506 310 22 22 chr1 30272162 30272346 -251921318 - MIR SINE MIR -77 185 2 2636 61 0 3 chr1 30272953 30273263 -251920401 + AluY SINE Alu 1 309 -2 290 119 0 0 chr1 30273548 30273590 -251920074 - MIR SINE MIR -219 43 2 2548 75 0 0 chr1 30273628 30273934 -251919730 - AluY SINE Alu -5 306 1 259 225 28 0 chr1 30274735 30274806 -251918858 + (TA)n Simple_repeat Simple_repeat 2 74 0 210 349 51 23 chr1 30274869 30275084 -251918580 - L2 LINE L2 -528 2786 2566 2480 87 3 0 chr1 30275464 30275773 -251917891 - AluSp SINE Alu -3 310 1 4158 45 13 2 chr1 30276021 30276558 -251917106 - L1PA4 LINE L1 -1 6154 5612 737 163 8 0 chr1 30276685 30276808 -251916856 + FLAM_C SINE Alu 1 124 -9 251 232 14 14 chr1 30276811 30276880 -251916784 + MIR SINE MIR 28 96 -166 318 162 22 199 chr1 30276982 30277077 -251916587 + MER81 DNA DNA 2 68 -46 2401 86 3 0 chr1 30277077 30277378 -251916286 + AluY SINE Alu 1 302 -9 318 162 22 199 chr1 30277378 30277418 -251916246 + MER81 DNA DNA 68 113 -1 288 280 13 0 chr1 30277513 30277588 -251916076 + MIR SINE MIR 121 196 -66 1883 160 3 10 chr1 30277789 30278089 -251915575 + AluJb SINE Alu 4 301 -11 840 157 16 32 chr1 30278157 30278331 -251915333 - MER69A DNA AcHobo -8 169 1 1181 149 11 114 chr1 30278515 30278568 -251915096 - MER8 DNA MER2_type -1 238 181 2278 97 0 7 chr1 30278568 30278879 -251914785 - AluSx SINE Alu 0 309 1 2258 126 0 3 chr1 30278888 30279198 -251914466 - AluSg SINE Alu -1 309 1 1181 149 11 114 chr1 30279198 30279394 -251914270 - MER8 DNA MER2_type -66 173 4 1879 147 17 10 chr1 30279612 30279904 -251913760 + AluSx SINE Alu 1 294 -18 490 164 0 0 chr1 30279911 30279984 -251913680 + AluS SINE Alu 5 77 -235 348 164 0 0 chr1 30280248 30280315 -251913349 + (TG)n Simple_repeat Simple_repeat 1 67 0 886 255 84 29 chr1 30280495 30280876 -251912788 + L2 LINE L2 2910 3311 -2 280 290 43 11 chr1 30280936 30281029 -251912635 - MIR SINE MIR -55 207 112 257 345 5 0 chr1 30281193 30281300 -251912364 + MIR SINE MIR 7 119 -89 286 280 124 6 chr1 30281676 30281841 -251911823 + MIR SINE MIR 14 192 -62 952 248 33 33 chr1 30282362 30282460 -251911204 + AluJo SINE Alu 1 98 -204 314 0 49 0 chr1 30282460 30282501 -251911163 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1685 148 4 12 chr1 30282503 30282759 -251910905 - AluJb SINE Alu -52 260 7 952 248 33 33 chr1 30282759 30282959 -251910705 + AluJo SINE Alu 98 302 0 346 258 117 17 chr1 30283116 30283236 -251910428 - MIR SINE MIR -12 250 119 1947 144 67 9 chr1 30283338 30283684 -251909980 - MER47A DNA MER2_type 0 366 1 188 338 13 26 chr1 30283810 30283887 -251909777 - MIR SINE MIR -116 92 17 341 222 70 70 chr1 30283895 30284045 -251909619 + MIR SINE MIR 24 176 -86 2532 151 58 13 chr1 30284045 30284510 -251909154 - MER66B LTR ERV1 0 486 1 341 222 70 70 chr1 30284510 30284530 -251909134 + MIR SINE MIR 175 194 -68 264 255 88 0 chr1 30284584 30284686 -251908978 + MIR3 SINE MIR 90 200 -8 2134 74 24 34 chr1 30285244 30285562 -251908102 - AluY SINE Alu 0 311 1 832 144 0 23 chr1 30285936 30286068 -251907596 + AluSg/x SINE Alu 163 291 -19 320 304 60 24 chr1 30286232 30286400 -251907264 + MIR SINE MIR 20 193 -69 1326 194 27 34 chr1 30286470 30286763 -251906901 - AluJb SINE Alu -21 291 1 2398 83 0 7 chr1 30286912 30287214 -251906450 - AluY SINE Alu -11 300 1 183 292 15 15 chr1 30287283 30287348 -251906316 - MIR SINE MIR -137 125 61 827 167 0 0 chr1 30287647 30287779 -251905885 - FLAM_C SINE Alu -9 134 3 2131 128 13 0 chr1 30287785 30288091 -251905573 - AluSx SINE Alu -2 310 1 737 202 24 30 chr1 30288147 30288315 -251905349 - FRAM SINE Alu -13 163 1 290 216 281 36 chr1 30289146 30289285 -251904379 - MIR SINE MIR 0 262 90 2004 99 51 20 chr1 30289296 30289589 -251904075 - AluSx SINE Alu -10 302 1 2110 123 0 7 chr1 30290227 30290520 -251903144 + AluSx SINE Alu 1 291 -21 1596 168 28 31 chr1 30290603 30290889 -251902775 + AluJo SINE Alu 7 291 -21 2003 111 57 0 chr1 30290892 30291171 -251902493 + AluSq SINE Alu 1 295 -18 185 297 314 16 chr1 30291522 30291707 -251901957 + MIR SINE MIR 23 262 0 2133 98 11 11 chr1 30292331 30292618 -251901046 - AluSg1 SINE Alu -22 287 1 1926 133 14 4 chr1 30292626 30292937 -251900727 - AluSx SINE Alu 0 314 1 347 277 32 0 chr1 30292942 30293036 -251900628 + L2 LINE L2 3214 3310 -3 24 0 0 0 chr1 30293064 30293088 -251900576 + AT_rich Low_complexity Low_complexity 1 24 0 2019 70 0 0 chr1 30293098 30293339 -251900325 + AluY SINE Alu 1 241 -70 2207 97 10 0 chr1 30293445 30293735 -251899929 + AluSx SINE Alu 12 304 -8 1658 130 50 76 chr1 30294073 30294374 -251899290 + AluSx SINE Alu 1 293 -19 246 323 52 0 chr1 30294471 30294567 -251899097 - L2 LINE L2 -4 3268 3168 225 344 5 48 chr1 30294646 30294835 -251898829 - L1ME4a LINE L1 -81 6040 5860 2254 94 3 3 chr1 30294842 30295130 -251898534 - AluSp SINE Alu -13 300 13 713 158 23 30 chr1 30295144 30295277 -251898387 - FLAM_A SINE Alu 0 133 2 2135 121 10 3 chr1 30295288 30295586 -251898078 - AluSq SINE Alu -13 300 1 406 250 87 109 chr1 30295594 30295796 -251897868 - L1ME4a LINE L1 -265 5856 5664 2083 123 7 0 chr1 30295796 30296089 -251897575 + AluSq SINE Alu 1 295 -18 406 250 87 109 chr1 30296089 30296254 -251897410 - L1ME4a LINE L1 -457 5664 5497 642 116 0 0 chr1 30296272 30296358 -251897306 - AluJ/FLAM SINE Alu -221 91 6 2077 115 6 37 chr1 30296440 30296762 -251896902 + AluSx SINE Alu 1 312 0 1107 159 0 0 chr1 30296766 30296929 -251896735 + AluSg/x SINE Alu 129 291 -21 687 222 0 0 chr1 30297126 30297252 -251896412 + AluJb SINE Alu 2 127 -185 2381 89 7 0 chr1 30297364 30297667 -251895997 + AluSq SINE Alu 1 305 -8 3192 149 11 31 chr1 30297667 30298092 -251895572 - Tigger1 DNA MER2_type -194 2224 1811 1753 139 0 16 chr1 30298092 30298350 -251895314 + AluSx SINE Alu 37 290 -22 3192 149 11 31 chr1 30298350 30298476 -251895188 - Tigger1 DNA MER2_type -607 1811 1684 622 133 0 0 chr1 30298476 30298566 -251895098 + AluSg/x SINE Alu 209 298 -14 1944 157 7 0 chr1 30298613 30298912 -251894752 + AluSx SINE Alu 1 301 -11 904 132 16 0 chr1 30298916 30299045 -251894619 + AluSq/x SINE Alu 1 131 -181 2470 45 0 72 chr1 30299045 30299378 -251894286 + AluY SINE Alu 1 309 -2 22 0 0 54 chr1 30299431 30299451 -251894213 + AT_rich Low_complexity Low_complexity 1 20 -15 2335 91 13 7 chr1 30299451 30299758 -251893906 + AluSx SINE Alu 1 309 -3 22 0 0 54 chr1 30299758 30299774 -251893890 + AT_rich Low_complexity Low_complexity 20 35 0 1936 170 0 6 chr1 30299775 30300087 -251893577 + AluJb SINE Alu 1 310 -2 1853 171 7 0 chr1 30300120 30300407 -251893257 - AluSx SINE Alu -23 289 1 1957 123 60 11 chr1 30300416 30300701 -251892963 - AluSx SINE Alu -11 301 3 2443 91 0 3 chr1 30301711 30302019 -251891645 - AluSp SINE Alu -6 307 1 570 257 0 0 chr1 30302386 30302499 -251891165 + MER3 DNA MER1_type 1 113 -96 235 242 16 16 chr1 30302455 30302517 -251891147 - Charlie5 DNA MER1_type -2546 66 5 * 21 0 0 0 chr1 30303195 30303216 -251890448 + AT_rich Low_complexity Low_complexity 1 21 0 1612 193 7 7 chr1 30304001 30304301 -251889363 - AluJo SINE Alu -12 300 1 2144 138 0 0 chr1 30304527 30304832 -251888832 - AluSx SINE Alu -7 305 1 955 161 37 12 chr1 30304833 30304995 -251888669 - FRAM SINE Alu -10 166 1 25 0 0 0 chr1 30305380 30305405 -251888259 + AT_rich Low_complexity Low_complexity 1 25 0 2104 140 0 16 chr1 30305675 30305847 -251887817 - AluSg SINE Alu -7 303 137 2408 90 0 3 chr1 30305847 30306148 -251887516 - AluSg SINE Alu -10 300 1 2104 140 0 16 chr1 30306148 30306283 -251887381 - AluSg SINE Alu -173 137 1 2278 74 17 14 chr1 30306286 30306583 -251887081 - AluY SINE Alu -13 298 1 2378 66 17 0 chr1 30306640 30306928 -251886736 - AluY SINE Alu -18 293 1 684 118 0 0 chr1 30307220 30307322 -251886342 - AluSq/x SINE Alu -204 108 7 2480 67 3 13 chr1 30307360 30307673 -251885991 + AluY SINE Alu 1 310 -1 715 239 53 25 chr1 30308113 30308356 -251885308 - MIR SINE MIR -10 252 3 2081 122 0 10 chr1 30309050 30309345 -251884319 - AluSx SINE Alu -20 292 1 476 268 71 0 chr1 30310664 30310791 -251882873 + L2 LINE L2 3137 3272 0 333 295 124 0 chr1 30312357 30312486 -251881178 - L2 LINE L2 -7 3265 3121 2542 80 0 6 chr1 30313569 30313883 -251879781 + AluSx SINE Alu 1 312 0 5786 29 26 6 chr1 30314302 30314952 -251878712 - SVA Other Other 0 1386 724 320 279 153 27 chr1 30314997 30315180 -251878484 - MIR SINE MIR -49 213 8 1643 140 113 0 chr1 30316356 30316613 -251877051 - AluSx SINE Alu -26 286 1 1857 108 0 98 chr1 30316619 30316787 -251876877 - AluSx SINE Alu -37 275 149 2139 117 0 36 chr1 30316787 30317094 -251876570 - AluSq SINE Alu -17 296 1 1857 108 0 98 chr1 30317094 30317230 -251876434 - AluSx SINE Alu -163 149 1 378 0 0 0 chr1 30317508 30317550 -251876114 + (CA)n Simple_repeat Simple_repeat 2 43 0 2236 113 13 3 chr1 30317675 30317984 -251875680 - AluSx SINE Alu 0 312 1 2488 75 3 0 chr1 30318068 30318373 -251875291 + AluY SINE Alu 5 310 -1 2228 117 0 7 chr1 30318520 30318819 -251874845 - AluSg SINE Alu -13 297 1 501 194 54 47 chr1 30318904 30319033 -251874631 + MER5B DNA MER1_type 1 130 -48 2126 122 0 22 chr1 30319094 30319405 -251874259 + AluSx SINE Alu 1 304 -8 602 132 11 0 chr1 30319449 30319540 -251874124 - U6 snRNA snRNA -15 92 1 26 30 0 0 chr1 30319980 30320013 -251873651 + AT_rich Low_complexity Low_complexity 1 33 0 704 153 0 99 chr1 30320013 30320144 -251873520 - FLAM_C SINE Alu -15 118 1 207 0 0 0 chr1 30320899 30320922 -251872742 + (CAA)n Simple_repeat Simple_repeat 2 24 0 227 193 88 0 chr1 30321571 30321628 -251872036 + LTR29 LTR ERV1 269 330 -292 2216 124 0 9 chr1 30322028 30322343 -251871321 - AluSx SINE Alu 0 312 1 333 207 175 28 chr1 30322470 30322774 -251870890 - L1ME4a LINE L1 -4 6117 5744 5079 19 16 0 chr1 30322899 30323477 -251870187 - L1PA3 LINE L1 0 6155 5569 2256 42 4 2 chr1 30323477 30323782 -251869882 + L1P LINE L1 5063 5367 -789 515 207 41 135 chr1 30324568 30324787 -251868877 + L1MC4 LINE L1 7802 7993 -49 1963 158 24 7 chr1 30324787 30325084 -251868580 - AluJo SINE Alu -10 302 1 515 207 41 135 chr1 30325084 30325130 -251868534 + L1MC4 LINE L1 7993 8042 0 2313 78 10 0 chr1 30325151 30325444 -251868220 + AluSp SINE Alu 1 296 -17 2208 103 3 7 chr1 30325677 30325977 -251867687 - AluY SINE Alu -12 299 1 603 234 48 0 chr1 30325984 30326108 -251867556 - FLAM_A SINE Alu -1 141 12 1230 209 17 8 chr1 30326378 30326617 -251867047 + MER21-int LTR ERV1 1773 2013 -2178 * 1699 189 47 21 chr1 30326608 30326946 -251866718 + MER21-int LTR ERV1 2182 2528 -1663 615 141 23 40 chr1 30326947 30327124 -251866540 + CT-rich Low_complexity Low_complexity 2 175 0 2311 104 7 0 chr1 30327133 30327440 -251866224 - AluSg SINE Alu -1 309 1 298 109 22 0 chr1 30327440 30327486 -251866178 + CT-rich Low_complexity Low_complexity 2 48 0 469 104 0 0 chr1 30327486 30327553 -251866111 - Alu SINE Alu -242 68 2 2170 130 0 13 chr1 30327575 30327752 -251865912 - AluSx SINE Alu -1 311 138 2117 112 10 10 chr1 30327752 30328047 -251865617 - AluSq SINE Alu -18 295 1 2170 130 0 13 chr1 30328047 30328184 -251865480 - AluSx SINE Alu -174 138 1 574 121 11 33 chr1 30328199 30328290 -251865374 + MER21-int LTR ERV1 2555 2643 -1548 793 181 67 138 chr1 30328850 30329221 -251864443 + MER2 DNA MER2_type 1 345 0 2178 83 42 3 chr1 30329223 30329511 -251864153 - AluSx SINE Alu -13 299 1 1750 167 14 0 chr1 30329547 30329828 -251863836 - AluJo SINE Alu -27 285 1 1561 135 0 0 chr1 30329956 30330186 -251863478 + AluSg/x SINE Alu 80 309 -3 469 143 0 51 chr1 30330208 30330306 -251863358 - MER5B DNA MER1_type 0 178 86 256 232 0 14 chr1 30330306 30330375 -251863289 + MER116 DNA Mariner 1 68 -12 263 259 59 35 chr1 30330387 30330472 -251863192 - MER5B DNA MER1_type -91 87 1 2050 154 0 0 chr1 30330602 30330900 -251862764 + AluSx SINE Alu 1 298 -14 2355 88 7 0 chr1 30331338 30331643 -251862021 + AluSp SINE Alu 2 308 -5 884 123 8 8 chr1 30332441 30332571 -251861093 + FLAM_C SINE Alu 1 130 -13 830 152 0 8 chr1 30332629 30332754 -251860910 - FLAM_C SINE Alu -8 125 2 1990 96 46 0 chr1 30332754 30333036 -251860628 - AluSq SINE Alu -14 299 5 247 284 49 37 chr1 30333188 30333269 -251860395 - L2 LINE L2 -58 3214 3133 21 0 0 0 chr1 30333713 30333734 -251859930 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr1 30334091 30334131 -251859533 + AT_rich Low_complexity Low_complexity 1 40 0 2305 84 14 10 chr1 30334320 30334617 -251859047 + AluSg SINE Alu 1 298 -12 2275 101 3 3 chr1 30334717 30335024 -251858640 - AluSg SINE Alu -3 307 1 2121 97 3 24 chr1 30335430 30335773 -251857891 + AluSx SINE Alu 1 337 0 1909 234 61 79 chr1 30335935 30336645 -251857019 - L1ME3A LINE L1 -106 6064 5368 3991 163 87 61 chr1 30336648 30336717 -251856947 + Charlie1 DNA MER1_type 82 148 -2613 2136 101 17 10 chr1 30336717 30337015 -251856649 + L1MA2 LINE L1 6005 6304 0 3991 163 87 61 chr1 30337015 30337036 -251856628 + Charlie1 DNA MER1_type 148 167 -2594 1808 148 74 44 chr1 30337036 30337400 -251856264 + THE1C LTR MaLR 1 375 0 3991 163 87 61 chr1 30337400 30338350 -251855314 + Charlie1 DNA MER1_type 167 2450 -311 1014 223 5 0 chr1 30338351 30338575 -251855089 + L1M1 LINE L1 2930 3154 -4411 1069 129 15 156 chr1 30338575 30338891 -251854773 + Charlie1 DNA MER1_type 2430 2698 -63 1823 117 61 109 chr1 30338891 30339243 -251854421 + THE1C LTR MaLR 1 334 -41 2237 108 0 3 chr1 30339243 30339548 -251854116 - AluSg SINE Alu -6 304 1 1823 117 61 109 chr1 30339548 30339589 -251854075 + THE1C LTR MaLR 334 375 0 1069 129 15 156 chr1 30339589 30339606 -251854058 + Charlie1 DNA MER1_type 2698 2716 -45 2379 75 3 3 chr1 30339642 30339934 -251853730 - AluSp SINE Alu -21 292 1 325 135 0 0 chr1 30339941 30339993 -251853671 + Charlie1 DNA MER1_type 2705 2756 -5 287 160 53 130 chr1 30340002 30340050 -251853614 - L1ME3A LINE L1 -831 5315 5265 2336 101 3 0 chr1 30340050 30340356 -251853308 - AluSg SINE Alu -3 307 1 287 160 53 130 chr1 30340356 30340438 -251853226 - L1ME3A LINE L1 -881 5265 5195 1114 299 68 25 chr1 30340443 30341183 -251852481 - L1MEc LINE L1 -865 1625 1004 371 328 36 40 chr1 30341228 30341475 -251852189 - L1MEc LINE L1 -5310 809 564 2157 114 0 16 chr1 30342646 30342961 -251850703 - AluSx SINE Alu -2 310 1 1682 189 39 0 chr1 30343259 30343545 -251850119 + AluJb SINE Alu 1 297 -15 398 20 20 0 chr1 30343545 30343596 -251850068 + (CA)n Simple_repeat Simple_repeat 2 53 0 1996 126 7 13 chr1 30344023 30344324 -251849340 + AluSq SINE Alu 1 299 -14 1790 124 4 4 chr1 30344334 30344600 -251849064 + AluY SINE Alu 39 304 -7 1227 173 0 31 chr1 30345104 30345329 -251848335 - AluJo SINE Alu -10 302 85 893 133 17 99 chr1 30345346 30345413 -251848251 - AluJo/FRAM SINE Alu 0 302 231 2415 93 0 0 chr1 30345413 30345715 -251847949 - AluSx SINE Alu -10 302 1 893 133 17 99 chr1 30345715 30345828 -251847836 - AluJo/FRAM SINE Alu -71 231 137 866 243 45 5 chr1 30345937 30346159 -251847505 - MIR SINE MIR -2 260 30 297 0 0 0 chr1 30346169 30346202 -251847462 + (TG)n Simple_repeat Simple_repeat 2 34 0 258 354 87 17 chr1 30346315 30346603 -251847061 - L2 LINE L2 -934 2380 2073 1698 120 15 135 chr1 30346721 30347054 -251846610 + AluSx SINE Alu 1 293 -19 2400 80 3 10 chr1 30347073 30347374 -251846290 + AluSp SINE Alu 1 299 -14 1688 182 0 42 chr1 30347386 30347699 -251845965 + AluJo SINE Alu 1 300 -12 729 211 87 45 chr1 30348418 30348472 -251845192 + MER112 DNA MER1_type 2 52 -204 2254 109 0 7 chr1 30348472 30348774 -251844890 + AluSx SINE Alu 1 300 -12 729 211 87 45 chr1 30348774 30348961 -251844703 + MER112 DNA MER1_type 52 253 -3 1895 159 10 3 chr1 30349055 30349350 -251844314 + AluJo SINE Alu 1 297 -15 1590 194 3 7 chr1 30349754 30350058 -251843606 + AluJo SINE Alu 3 305 -7 25 0 0 0 chr1 30350058 30350083 -251843581 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr1 30350172 30350204 -251843460 + AT_rich Low_complexity Low_complexity 1 32 0 181 203 17 51 chr1 30350298 30350357 -251843307 - MIR SINE MIR -117 145 89 704 120 0 19 chr1 30351311 30351419 -251842245 + MLT1A1 LTR MaLR 1 106 -259 455 139 28 0 chr1 30351419 30351491 -251842173 + MLT1A1 LTR MaLR 292 365 0 957 128 11 17 chr1 30351706 30352065 -251841599 + (TA)n Simple_repeat Simple_repeat 2 358 0 23 0 0 0 chr1 30352066 30352089 -251841575 + AT_rich Low_complexity Low_complexity 1 23 0 1167 97 0 0 chr1 30352089 30352243 -251841421 - AluSc SINE Alu -24 285 132 2347 93 0 0 chr1 30352243 30352544 -251841120 - AluY SINE Alu -10 301 1 584 112 142 166 chr1 30352688 30352796 -251840868 + MER2 DNA MER2_type 1 110 -235 2383 99 0 0 chr1 30352796 30353099 -251840565 - AluSp SINE Alu -10 303 1 2382 103 3 0 chr1 30353106 30353417 -251840247 - AluSq SINE Alu 0 313 2 584 112 142 166 chr1 30353417 30353469 -251840195 + MER2 DNA MER2_type 116 165 -180 1334 131 159 8 chr1 30353469 30353714 -251839950 + LTR12 LTR ERV1 4 285 -429 292 267 11 0 chr1 30353715 30353805 -251839859 + LTR30 LTR ERV1 553 643 -79 699 119 0 0 chr1 30353805 30353906 -251839758 + LTR12 LTR ERV1 613 713 -1 1087 134 52 0 chr1 30353906 30354078 -251839586 + MER2 DNA MER2_type 165 345 0 609 266 44 52 chr1 30354940 30355040 -251838624 - MIR SINE MIR -7 255 156 2383 84 3 3 chr1 30355040 30355348 -251838316 - AluY SINE Alu -3 308 1 609 266 44 52 chr1 30355348 30355499 -251838165 - MIR SINE MIR -106 156 6 2386 82 0 0 chr1 30356407 30356701 -251836963 - AluSx SINE Alu -18 294 1 424 182 114 38 chr1 30357262 30357394 -251836270 - MIR SINE MIR -12 250 109 207 0 0 0 chr1 30357403 30357426 -251836238 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 825 285 116 4 chr1 30357599 30357981 -251835683 - L2 LINE L2 -168 3145 2728 320 398 0 0 chr1 30358357 30358475 -251835189 + MIR SINE MIR 23 140 -68 1885 179 3 0 chr1 30359558 30359865 -251833799 + AluJo SINE Alu 1 308 -4 2407 84 0 3 chr1 30359885 30360181 -251833483 - AluSp SINE Alu -18 295 1 2192 119 3 3 chr1 30360443 30360755 -251832909 + AluSx SINE Alu 1 312 0 2021 134 7 0 chr1 30361234 30361518 -251832146 - AluSq SINE Alu -23 290 5 669 235 71 90 chr1 30361640 30361680 -251831984 + MIR SINE MIR 13 52 -210 1709 161 33 20 chr1 30361680 30361979 -251831685 + AluJo SINE Alu 1 303 -9 669 235 71 90 chr1 30361979 30362193 -251831471 + MIR SINE MIR 52 262 0 873 227 122 0 chr1 30362461 30362690 -251830974 - MIR SINE MIR 0 262 6 2228 119 0 0 chr1 30362734 30363029 -251830635 + AluSx SINE Alu 1 295 -17 356 249 171 63 chr1 30363030 30363108 -251830556 - MIR SINE MIR 0 262 194 1972 137 0 23 chr1 30363108 30363408 -251830256 - AluJb SINE Alu -19 293 1 356 249 171 63 chr1 30363408 30363565 -251830099 - MIR SINE MIR -68 194 3 2225 82 7 7 chr1 30363589 30363882 -251829782 + AluSx SINE Alu 20 312 0 2179 93 3 20 chr1 30363987 30364287 -251829377 + AluSp SINE Alu 1 295 -18 2286 97 10 0 chr1 30364446 30364755 -251828909 + AluSx SINE Alu 1 312 0 1333 193 8 4 chr1 30365054 30365292 -251828372 + AluJo SINE Alu 37 275 -37 2050 116 3 23 chr1 30365359 30365669 -251827995 - AluSx SINE Alu -8 304 1 2438 88 0 7 chr1 30366166 30366473 -251827191 - AluSg SINE Alu -5 305 1 1103 247 129 53 chr1 30366622 30367096 -251826568 + L2 LINE L2 2804 3313 0 237 370 50 10 chr1 30367109 30367209 -251826455 - L2 LINE L2 -37 3235 3132 1837 161 0 11 chr1 30367327 30367646 -251826018 - AluJo SINE Alu 0 316 1 498 285 151 0 chr1 30367702 30367888 -251825776 + MIR SINE MIR 47 260 -2 199 310 71 59 chr1 30368108 30368363 -251825301 + L2 LINE L2 2804 3061 -211 2007 147 0 0 chr1 30368506 30368798 -251824866 + AluJb SINE Alu 1 292 -20 803 178 96 77 chr1 30369190 30369398 -251824266 + AluJo SINE Alu 87 298 -14 885 150 15 0 chr1 30369419 30369552 -251824112 + AluJo SINE Alu 1 135 -177 201 147 0 0 chr1 30370962 30370996 -251822668 + (CTGGGG)n Simple_repeat Simple_repeat 4 37 0 262 211 53 0 chr1 30371514 30371571 -251822093 - MIR SINE MIR -98 164 105 198 0 0 0 chr1 30371897 30371919 -251821745 + (CACCC)n Simple_repeat Simple_repeat 1 22 0 1554 150 8 0 chr1 30372015 30372269 -251821395 - AluJb SINE Alu -6 306 51 2371 71 0 0 chr1 30372385 30372690 -251820974 - AluSx SINE Alu 0 305 1 1538 129 0 13 chr1 30372915 30373148 -251820516 + AluJb SINE Alu 1 230 -82 23 0 0 0 chr1 30373220 30373243 -251820421 + AT_rich Low_complexity Low_complexity 1 23 0 2305 185 59 5 chr1 30373297 30373776 -251819888 - LTR65 LTR ERV1 0 632 167 366 227 91 0 chr1 30373837 30373925 -251819739 - MIR SINE MIR -111 151 56 325 141 136 0 chr1 30373926 30374017 -251819647 + L1ME3A LINE L1 5604 5714 -456 1764 139 0 4 chr1 30374073 30374332 -251819332 - AluJb SINE Alu -54 258 1 1833 194 37 57 chr1 30374343 30374545 -251819119 - L1ME2 LINE L1 -1 6163 5959 1922 116 3 55 chr1 30374545 30374856 -251818808 - AluSx SINE Alu -15 297 3 1833 194 37 57 chr1 30374856 30375113 -251818551 - L1ME2 LINE L1 -205 5959 5713 382 244 169 12 chr1 30375108 30375280 -251818384 + L1ME3A LINE L1 5691 5889 -275 * 1185 140 5 11 chr1 30375280 30375466 -251818198 + AluJo SINE Alu 127 311 -1 445 192 10 19 chr1 30375467 30375571 -251818093 + L1ME3A LINE L1 5874 5976 -194 1580 148 4 0 chr1 30375571 30375807 -251817857 + AluSx SINE Alu 1 237 -75 3071 178 34 54 chr1 30375908 30376342 -251817322 + L1ME1 LINE L1 5514 5932 -234 2240 104 3 0 chr1 30376342 30376639 -251817025 - AluSp SINE Alu -15 298 1 3071 178 34 54 chr1 30376639 30376855 -251816809 + L1ME1 LINE L1 5932 6151 -15 281 191 16 16 chr1 30377123 30377186 -251816478 - MIR SINE MIR -1 261 199 977 154 0 77 chr1 30377186 30377333 -251816331 + FRAM SINE Alu 1 131 -181 2333 97 0 0 chr1 30377333 30377631 -251816033 - AluSc SINE Alu -11 298 1 977 154 0 77 chr1 30377631 30377665 -251815999 + FRAM SINE Alu 131 166 -10 224 114 159 0 chr1 30377669 30377713 -251815951 - MIR SINE MIR -56 206 156 795 189 61 39 chr1 30377955 30378135 -251815529 + MLT1F LTR MaLR 1 184 -358 309 213 16 0 chr1 30378168 30378229 -251815435 + MLT1G1 LTR MaLR 1 62 -533 1325 187 0 4 chr1 30378249 30378474 -251815190 - LTR47B LTR ERVL -6 437 214 1147 79 0 0 chr1 30378598 30378737 -251814927 - AluSg SINE Alu -171 139 1 2336 112 0 0 chr1 30378843 30379155 -251814509 + AluSx SINE Alu 1 312 0 2212 128 0 0 chr1 30379163 30379475 -251814189 + AluSx SINE Alu 1 312 0 23 33 0 0 chr1 30379701 30379731 -251813933 + AT_rich Low_complexity Low_complexity 1 30 0 1705 168 21 11 chr1 30379743 30380028 -251813636 + AluJb SINE Alu 1 288 -24 2130 112 7 10 chr1 30380036 30380332 -251813332 + AluSx SINE Alu 1 295 -17 371 250 62 0 chr1 30380379 30380475 -251813189 + L2 LINE L2 3187 3288 -25 1553 150 59 11 chr1 30380500 30380773 -251812891 + AluJo SINE Alu 1 286 -26 2059 113 0 10 chr1 30382097 30382398 -251811266 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 30382881 30382902 -251810762 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr1 30383114 30383142 -251810522 + (A)n Simple_repeat Simple_repeat 1 28 0 342 205 0 0 chr1 30383177 30383260 -251810404 + A-rich Low_complexity Low_complexity 1 83 0 1693 167 13 16 chr1 30384005 30384311 -251809353 + AluJo SINE Alu 1 305 -7 508 263 98 58 chr1 30384770 30384975 -251808689 - MIR SINE MIR 0 262 50 1626 158 3 52 chr1 30385260 30385588 -251808076 + AluJb SINE Alu 1 312 0 484 221 136 14 chr1 30385774 30385914 -251807750 + MIR3 SINE MIR 6 162 -46 2307 68 0 3 chr1 30386087 30386383 -251807281 - AluY SINE Alu -16 295 1 2057 118 0 7 chr1 30386409 30386714 -251806950 + AluSx SINE Alu 1 303 -9 1097 125 17 23 chr1 30386716 30386892 -251806772 + AluSg/x SINE Alu 134 308 -2 414 192 0 0 chr1 30386892 30386970 -251806694 + MIR SINE MIR 185 262 0 1810 162 3 7 chr1 30386997 30387300 -251806364 - AluJb SINE Alu -10 302 1 1730 120 105 0 chr1 30387487 30387763 -251805901 + AluSx SINE Alu 1 305 -7 1604 190 3 7 chr1 30388203 30388508 -251805156 + AluJo SINE Alu 1 304 -8 2464 68 3 0 chr1 30389672 30389981 -251803683 + AluSp SINE Alu 1 310 -3 2275 75 0 53 chr1 30390880 30391200 -251802464 - AluSp SINE Alu -10 303 1 502 320 41 6 chr1 30391279 30391451 -251802213 - L3 LINE CR1 -107 1470 1293 353 277 72 54 chr1 30391837 30392003 -251801661 + L1MCa LINE L1 2228 2396 -4030 1616 139 110 0 chr1 30392004 30392277 -251801387 + AluJo SINE Alu 1 303 -9 1944 156 10 0 chr1 30392277 30392583 -251801081 + AluJb SINE Alu 1 310 -2 1527 152 82 4 chr1 30392921 30393191 -251800473 - AluJb SINE Alu -21 291 1 1750 144 43 0 chr1 30394422 30394700 -251798964 + AluSx SINE Alu 1 290 -22 2071 80 0 32 chr1 30395297 30395608 -251798056 + AluY SINE Alu 1 301 -10 2471 56 3 0 chr1 30395654 30395957 -251797707 + AluY SINE Alu 1 304 -7 293 266 67 53 chr1 30395962 30396131 -251797533 - MIR SINE MIR -56 206 31 2043 113 7 16 chr1 30396134 30396443 -251797221 - AluSx SINE Alu -6 306 1 361 257 30 0 chr1 30396612 30396713 -251796951 + L2 LINE L2 1914 2017 -1297 374 259 30 52 chr1 30396844 30396979 -251796685 + MER5A DNA MER1_type 2 133 -56 1488 189 10 7 chr1 30396980 30397271 -251796393 - AluJo SINE Alu -8 304 13 2043 121 0 19 chr1 30397324 30397637 -251796027 - AluSg SINE Alu -3 307 1 604 312 123 44 chr1 30397721 30398592 -251795072 + L2 LINE L2 2332 3271 -1 508 249 157 11 chr1 30398624 30398809 -251794855 - MIR SINE MIR -3 259 48 325 307 17 4 chr1 30399458 30399640 -251794024 + MIR SINE MIR 3 249 -13 2147 93 0 0 chr1 30399651 30399965 -251793699 + AluSc SINE Alu 1 314 0 853 195 24 18 chr1 30400118 30400287 -251793377 - FRAM SINE Alu -10 166 1 1885 151 3 3 chr1 30400297 30400595 -251793069 - AluJb SINE Alu -14 298 1 1274 188 12 23 chr1 30400658 30400914 -251792750 + AluJb SINE Alu 35 287 -25 1300 98 38 87 chr1 30400927 30400995 -251792669 - L1MA8 LINE L1 -53 6238 6168 2096 105 0 16 chr1 30400995 30401299 -251792365 - AluSg SINE Alu -11 299 1 1300 98 38 87 chr1 30401299 30401496 -251792168 - L1MA8 LINE L1 -123 6168 5986 280 356 87 20 chr1 30401624 30401773 -251791891 - MER91A DNA MER1_type -20 176 18 265 303 245 5 chr1 30401973 30402181 -251791483 + L2 LINE L2 2473 2730 -584 2061 120 0 10 chr1 30402181 30402480 -251791184 - AluSx SINE Alu -16 296 1 1395 160 149 4 chr1 30402622 30402884 -251790780 + AluJb SINE Alu 5 304 -8 2176 66 16 26 chr1 30402924 30403229 -251790435 - AluSp SINE Alu -9 304 3 1857 132 0 3 chr1 30404285 30404573 -251789091 - AluJb SINE Alu -25 287 1 964 299 116 24 chr1 30405016 30405486 -251788178 + L2 LINE L2 2791 3303 -10 2007 94 47 0 chr1 30405564 30405868 -251787796 - AluSg SINE Alu 0 317 1 743 154 24 24 chr1 30405876 30405999 -251787665 - FLAM_A SINE Alu -10 123 1 1516 170 6 61 chr1 30406011 30406186 -251787478 - AluJo SINE Alu -16 296 144 2134 109 0 31 chr1 30406186 30406508 -251787156 - AluSx SINE Alu 0 312 1 1516 170 6 61 chr1 30406508 30406644 -251787020 - AluJo SINE Alu -168 144 2 2178 108 3 9 chr1 30406829 30407144 -251786520 + AluSp SINE Alu 1 313 0 1920 95 0 115 chr1 30407151 30407489 -251786175 + AluSx SINE Alu 1 299 -13 723 264 109 0 chr1 30407538 30407731 -251785933 - MIR SINE MIR -17 245 32 2047 119 0 7 chr1 30407743 30408028 -251785636 - AluSg SINE Alu -17 293 11 328 304 99 19 chr1 30408218 30408379 -251785285 - MIR SINE MIR -12 250 77 896 258 191 15 chr1 30408630 30409139 -251784525 - L2 LINE L2 -2 3311 2710 2190 96 0 7 chr1 30409511 30409812 -251783852 - AluSc SINE Alu -10 299 1 2076 95 20 7 chr1 30410206 30410512 -251783152 - AluSx SINE Alu -2 310 1 186 43 0 0 chr1 30410570 30410593 -251783071 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 2057 111 19 7 chr1 30410847 30411154 -251782510 + AluSx SINE Alu 2 312 0 1880 152 7 10 chr1 30411627 30411930 -251781734 - AluSx SINE Alu -10 302 1 2234 92 0 0 chr1 30411956 30412249 -251781415 + AluSq SINE Alu 1 293 -20 2233 94 10 7 chr1 30412572 30412879 -251780785 + AluSq SINE Alu 1 308 -5 634 206 113 25 chr1 30413100 30413260 -251780404 + AluJo SINE Alu 125 298 -14 27 0 0 0 chr1 30413354 30413381 -251780283 + AT_rich Low_complexity Low_complexity 1 27 0 2242 103 3 0 chr1 30413592 30413904 -251779760 + AluSp SINE Alu 1 313 0 247 226 0 16 chr1 30413919 30413981 -251779683 - L1P LINE L1 -1136 5010 4950 * 831 220 34 34 chr1 30413979 30414307 -251779357 + L1ME2 LINE L1 4961 6153 -11 387 239 70 94 chr1 30414355 30414556 -251779108 + L1MC4 LINE L1 7830 8025 -17 1609 169 3 10 chr1 30414568 30414870 -251778794 + AluJb SINE Alu 1 300 -12 2065 121 0 7 chr1 30415100 30415398 -251778266 - AluSx SINE Alu -16 296 1 1618 179 3 3 chr1 30415427 30415718 -251777946 + AluJb SINE Alu 3 293 -19 2148 105 7 7 chr1 30415972 30416277 -251777387 + AluSg SINE Alu 1 305 -5 274 137 39 0 chr1 30416338 30416389 -251777275 + L1M4 LINE L1 4963 5015 -1131 316 234 139 3 chr1 30416673 30416798 -251776866 + MIR SINE MIR 46 192 -69 260 279 82 0 chr1 30416862 30416923 -251776741 + MIR SINE MIR 29 94 -114 23 0 0 0 chr1 30416951 30416974 -251776690 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr1 30417999 30418042 -251775622 + GC_rich Low_complexity Low_complexity 1 43 0 206 213 0 0 chr1 30418103 30418150 -251775514 + (CGGGG)n Simple_repeat Simple_repeat 2 48 0 303 333 36 0 chr1 30419300 30419411 -251774253 + MIR SINE MIR 32 146 -62 1620 142 0 66 chr1 30419444 30419536 -251774128 + AluJb SINE Alu 5 102 -210 2125 84 3 36 chr1 30419536 30419845 -251773819 + AluSx SINE Alu 1 299 -13 1620 142 0 66 chr1 30419845 30420054 -251773610 + AluJb SINE Alu 102 286 -26 882 113 22 108 chr1 30420089 30420191 -251773473 + L1MB5 LINE L1 5997 6106 -68 2157 75 3 53 chr1 30420191 30420510 -251773154 - AluSx SINE Alu -9 303 1 2145 104 7 0 chr1 30420510 30420807 -251772857 - AluSx SINE Alu -12 300 1 882 113 22 108 chr1 30420807 30420888 -251772776 + L1MB5 LINE L1 6104 6165 -9 1490 164 7 44 chr1 30420905 30421067 -251772597 - AluJb SINE Alu -25 287 139 2243 94 0 0 chr1 30421067 30421366 -251772298 - AluSg SINE Alu -11 299 1 1490 164 7 44 chr1 30421366 30421501 -251772163 - AluJb SINE Alu -173 139 1 2110 113 3 7 chr1 30421539 30421849 -251771815 + AluSx SINE Alu 1 309 -3 305 261 31 0 chr1 30421859 30421924 -251771740 + MIR SINE MIR 36 102 -160 37 0 0 0 chr1 30422228 30422265 -251771399 + AT_rich Low_complexity Low_complexity 1 37 0 1964 96 0 76 chr1 30422267 30422581 -251771083 - AluSq SINE Alu -23 290 1 1823 131 0 4 chr1 30422583 30422857 -251770807 - AluSx SINE Alu -19 293 21 399 173 34 64 chr1 30422857 30422991 -251770673 - AluJ/FLAM SINE Alu -233 69 1 1561 278 118 58 chr1 30423002 30423091 -251770573 - L2 LINE L2 -1 3312 3230 1570 184 10 0 chr1 30423091 30423384 -251770280 + AluJb SINE Alu 1 296 -16 1414 142 110 0 chr1 30423394 30423648 -251770016 + AluJo SINE Alu 1 282 -30 186 43 0 0 chr1 30423652 30423675 -251769989 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1561 278 118 58 chr1 30423675 30424136 -251769528 - L2 LINE L2 -93 3220 2788 850 152 0 8 chr1 30424136 30424268 -251769396 - FLAM_C SINE Alu -2 131 1 1561 278 118 58 chr1 30424268 30424795 -251768869 - L2 LINE L2 -525 2788 2153 2131 107 13 7 chr1 30424813 30425121 -251768543 - AluSg SINE Alu 0 310 1 527 263 38 15 chr1 30425158 30425291 -251768373 - L2 LINE L2 0 3272 3137 261 247 0 0 chr1 30425292 30425365 -251768299 + (TA)n Simple_repeat Simple_repeat 2 74 0 214 195 91 13 chr1 30425369 30425446 -251768218 - L2 LINE L2 -148 3165 3083 1379 169 79 48 chr1 30425454 30425603 -251768061 - L1MB4 LINE L1 -1 6165 6022 1475 137 0 87 chr1 30425603 30425903 -251767761 + AluJb SINE Alu 22 295 -17 1379 169 79 48 chr1 30425903 30426191 -251767473 - L1MB4 LINE L1 -144 6022 5729 740 107 0 126 chr1 30426191 30426350 -251767314 - MLT1A1 LTR MaLR 0 365 227 886 150 0 26 chr1 30426407 30426560 -251767104 - FRAM SINE Alu -15 161 13 999 202 34 22 chr1 30426560 30426797 -251766867 - L1MB4 LINE L1 -817 5329 5087 1926 129 20 3 chr1 30426797 30427099 -251766565 + AluSx SINE Alu 1 307 -5 999 202 34 22 chr1 30427099 30427128 -251766536 - L1MB4 LINE L1 -1059 5087 5060 1844 230 160 94 chr1 30427129 30427486 -251766178 - L2 LINE L2 -774 2540 2208 1184 214 173 18 chr1 30427486 30427827 -251765837 - MSTD LTR MaLR -2 394 1 1844 230 160 94 chr1 30427827 30428292 -251765372 - L2 LINE L2 -1106 2208 1775 1967 117 7 23 chr1 30428292 30428451 -251765213 - AluSx SINE Alu -18 294 134 188 33 0 33 chr1 30428451 30428481 -251765183 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2318 58 7 3 chr1 30428483 30428775 -251764889 - AluSp SINE Alu -20 293 1 1967 117 7 23 chr1 30428775 30428911 -251764753 - AluSx SINE Alu -179 133 1 1844 230 160 94 chr1 30428911 30429131 -251764533 - L2 LINE L2 -1539 1775 1428 1864 164 3 0 chr1 30429131 30429429 -251764235 - AluJb SINE Alu -13 299 1 1582 181 7 3 chr1 30429429 30429716 -251763948 - AluJo SINE Alu -19 293 6 228 259 24 94 chr1 30430006 30430157 -251763507 - MLT1J2 LTR MaLR -9 441 302 4133 91 39 5 chr1 30430157 30430718 -251762946 - LTR19B LTR ERV1 0 580 1 228 259 24 94 chr1 30430718 30430736 -251762928 - MLT1J2 LTR MaLR -148 302 284 1042 231 179 46 chr1 30430790 30431141 -251762523 + L2 LINE L2 2138 2535 -779 2732 221 78 14 chr1 30431259 30431584 -251762080 + Zaphod DNA AcHobo 39 342 -3689 2221 98 3 0 chr1 30431584 30431889 -251761775 + AluSp SINE Alu 1 306 -7 2732 221 78 14 chr1 30431889 30432279 -251761385 + Zaphod DNA AcHobo 342 800 -3231 1753 177 3 3 chr1 30432291 30432601 -251761063 - AluJb SINE Alu -2 310 1 2292 83 3 6 chr1 30432610 30432922 -251760742 - AluY SINE Alu 0 311 1 905 194 6 0 chr1 30432932 30433102 -251760562 - AluJo SINE Alu -21 291 121 742 176 0 21 chr1 30433145 30433287 -251760377 + FLAM_C SINE Alu 2 140 -3 330 103 56 95 chr1 30433292 30433394 -251760270 + Zaphod DNA AcHobo 870 968 -3063 2219 113 0 0 chr1 30433394 30433696 -251759968 - AluSx SINE Alu -10 302 1 330 103 56 95 chr1 30433696 30433717 -251759947 + Zaphod DNA AcHobo 968 988 -3043 1303 157 29 9 chr1 30433717 30433927 -251759737 - MER58A DNA MER1_type 0 224 11 2011 132 0 3 chr1 30433952 30434248 -251759416 + AluSx SINE Alu 1 295 -17 473 98 0 0 chr1 30434251 30434312 -251759352 + Alu SINE Alu 2 62 -256 502 86 29 0 chr1 30434412 30434482 -251759182 - AluSq/x SINE Alu -174 138 67 1140 180 0 5 chr1 30434482 30434682 -251758982 - AluSx SINE Alu -113 199 1 798 164 0 0 chr1 30434706 30434834 -251758830 - FLAM_C SINE Alu -2 141 14 1953 109 0 51 chr1 30434916 30435228 -251758436 + AluSc SINE Alu 1 296 -13 305 252 222 22 chr1 30435359 30435589 -251758075 - L1ME4a LINE L1 -235 5886 5611 1145 88 0 35 chr1 30435612 30435783 -251757881 + AluSg/x SINE Alu 137 301 -11 1239 161 118 18 chr1 30437305 30437584 -251756080 + AluJo SINE Alu 1 307 -5 534 266 123 32 chr1 30437584 30437988 -251755676 - L2 LINE L2 -18 3295 2767 2340 52 0 58 chr1 30438015 30438342 -251755322 - AluY SINE Alu -3 308 1 1407 116 0 0 chr1 30438343 30438541 -251755123 - AluSg/x SINE Alu -22 290 93 825 282 67 30 chr1 30438584 30438985 -251754679 - L2 LINE L2 -1160 2154 1739 2150 98 0 3 chr1 30439864 30440161 -251753503 + AluSx SINE Alu 1 296 -16 1666 153 7 17 chr1 30440174 30440461 -251753203 + AluJb SINE Alu 13 296 -16 197 204 93 0 chr1 30440922 30440976 -251752688 + MIR SINE MIR 116 174 -88 423 308 82 19 chr1 30442316 30442475 -251751189 + MIR SINE MIR 47 215 -47 2269 82 0 0 chr1 30442759 30443051 -251750613 + AluY SINE Alu 1 292 -19 2112 104 3 0 chr1 30443408 30443705 -251749959 - AluY SINE Alu 0 311 14 328 226 19 66 chr1 30444492 30444505 -251749159 - Charlie7 DNA MER1_type -2511 101 89 822 142 0 30 chr1 30444505 30444639 -251749025 + FLAM_C SINE Alu 1 130 -3 328 226 19 66 chr1 30444639 30444731 -251748933 - Charlie7 DNA MER1_type -2523 89 1 1757 117 37 40 chr1 30444869 30444964 -251748700 + AluSx SINE Alu 1 95 -217 2150 80 40 0 chr1 30444964 30445263 -251748401 + AluSp SINE Alu 1 311 -2 1757 117 37 40 chr1 30445263 30445466 -251748198 + AluSx SINE Alu 95 298 -14 377 82 16 0 chr1 30445649 30445710 -251747954 + L1PB2 LINE L1 6090 6151 0 3161 166 2 2 chr1 30445718 30446253 -251747411 - MSTB-int LTR MaLR -1116 535 1 310 90 11 214 chr1 30446253 30446298 -251747366 - MSTB LTR MaLR 0 426 374 2257 101 0 0 chr1 30446298 30446605 -251747059 + AluSc SINE Alu 1 307 -2 1931 112 4 0 chr1 30446610 30446879 -251746785 + AluSc SINE Alu 1 270 -39 310 90 11 214 chr1 30446879 30446916 -251746748 - MSTB LTR MaLR -56 370 356 1047 148 22 181 chr1 30446916 30447319 -251746345 + AluYb8 SINE Alu 1 318 0 1581 195 10 0 chr1 30447321 30447619 -251746045 + AluJo SINE Alu 3 303 -9 1522 118 156 7 chr1 30447671 30447941 -251745723 + AluSq SINE Alu 2 311 -2 1129 186 4 26 chr1 30447942 30448168 -251745496 + AluJb SINE Alu 87 307 -5 661 223 56 33 chr1 30448234 30448492 -251745172 + MER66-int LTR ERV1 1889 2140 -4536 1596 179 3 3 chr1 30448492 30448783 -251744881 + AluJo SINE Alu 1 291 -21 661 223 56 33 chr1 30448783 30448837 -251744827 + MER66-int LTR ERV1 2140 4073 -2603 1838 168 96 3 chr1 30449137 30449470 -251744194 + MSTA LTR MaLR 1 364 -64 219 36 0 0 chr1 30449470 30449498 -251744166 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1172 106 0 119 chr1 30449631 30449857 -251743807 - AluSq SINE Alu -114 199 1 21 0 0 0 chr1 30449857 30449878 -251743786 + AT_rich Low_complexity Low_complexity 1 21 0 1233 99 33 11 chr1 30449919 30450122 -251743542 - AluSg/x SINE Alu 0 306 100 425 210 75 70 chr1 30450165 30450205 -251743459 - MER65A-int LTR ERV1 -2363 2508 2470 2251 112 0 0 chr1 30450205 30450517 -251743147 - AluSq SINE Alu -1 312 1 425 210 75 70 chr1 30450517 30450986 -251742678 - MER65A-int LTR ERV1 -2401 2470 1563 1900 214 88 68 chr1 30450986 30451672 -251741992 - MER65A-int LTR ERV1 -4162 709 11 2178 132 23 94 chr1 30451678 30451810 -251741854 - MER65A LTR ERV1 0 445 305 2073 48 0 0 chr1 30451810 30452081 -251741583 - AluY SINE Alu 0 307 37 2178 132 23 94 chr1 30452081 30452139 -251741525 - MER65A LTR ERV1 -140 305 244 2305 88 0 0 chr1 30452139 30452446 -251741218 - AluY SINE Alu -4 307 1 2178 132 23 94 chr1 30452446 30452732 -251740932 - MER65A LTR ERV1 -201 244 1 262 241 17 0 chr1 30452736 30452794 -251740870 + L2 LINE L2 2552 2610 -704 2166 251 85 26 chr1 30452801 30453414 -251740250 + MLT2F LTR ERVL 7 655 -8 399 185 423 0 chr1 30453416 30453546 -251740118 + L2 LINE L2 2604 2788 -526 2426 87 0 0 chr1 30454086 30454398 -251739266 + AluSx SINE Alu 1 312 0 378 380 27 49 chr1 30454400 30454766 -251738898 + HERV16 LTR ERVL 425 782 -4214 361 184 193 55 chr1 30454999 30455108 -251738556 + MLT1H LTR MaLR 3 126 -423 344 236 107 18 chr1 30455109 30455223 -251738441 + MLT1G1 LTR MaLR 426 595 0 2056 77 0 7 chr1 30455319 30455593 -251738071 - AluSg SINE Alu 0 310 39 254 274 73 40 chr1 30455679 30455803 -251737861 + HERV16 LTR ERVL 1299 1426 -4228 27 0 0 0 chr1 30455995 30456022 -251737642 + AT_rich Low_complexity Low_complexity 1 27 0 666 125 80 0 chr1 30456095 30456207 -251737457 - FRAM SINE Alu -12 164 44 660 291 67 32 chr1 30456213 30456556 -251737108 + HERV16 LTR ERVL 1733 2087 -2909 330 270 34 22 chr1 30456542 30456631 -251737033 + HERV16 LTR ERVL 2189 2278 -3486 * 264 170 43 0 chr1 30456634 30456681 -251736983 - MLT2D LTR ERVL 0 414 366 207 204 0 0 chr1 30456683 30456727 -251736937 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 794 119 0 0 chr1 30456727 30456836 -251736828 + MER7A DNA MER2_type 1 107 -239 1331 128 0 0 chr1 30456936 30457123 -251736541 + MER7A DNA MER2_type 148 334 -2 2427 68 0 3 chr1 30457142 30457449 -251736215 - AluY SINE Alu -5 306 1 3526 175 67 24 chr1 30457520 30457835 -251735829 + MER21B LTR ERV1 1 301 -562 1612 168 19 23 chr1 30457835 30458144 -251735520 + AluJb SINE Alu 1 308 -4 3526 175 67 24 chr1 30458144 30458486 -251735178 + MER21B LTR ERV1 301 686 -177 3814 119 2 7 chr1 30458486 30458846 -251734818 + MER41B LTR ERV1 3 363 -272 1967 118 4 0 chr1 30458846 30459151 -251734513 + AluSx SINE Alu 5 310 0 2251 96 0 0 chr1 30459151 30459452 -251734212 + AluSg SINE Alu 1 301 -9 3814 119 2 7 chr1 30459452 30459634 -251734030 + MER41B LTR ERV1 361 544 -91 2379 73 7 0 chr1 30459653 30459956 -251733708 + AluSc SINE Alu 2 306 -3 2271 78 0 0 chr1 30459962 30460255 -251733409 + AluSq SINE Alu 5 297 -16 20267 121 19 34 chr1 30460257 30460708 -251732956 + MER41B-int LTR ERV1 2596 3053 -2893 689 118 20 0 chr1 30460708 30460810 -251732854 - U6 snRNA snRNA -3 104 1 20267 121 19 34 chr1 30460810 30463762 -251729902 + MER41B-int LTR ERV1 3053 5946 0 3874 130 39 19 chr1 30463762 30464385 -251729279 + MER41B LTR ERV1 1 635 0 771 163 42 20 chr1 30464385 30464552 -251729112 + MER21A LTR ERV1 681 891 -1 4312 185 43 4 chr1 30464568 30465350 -251728314 + MER21A-int LTR ERV1 2 814 -3377 246 267 0 86 chr1 30465350 30465455 -251728209 + MER34 LTR ERV1 1 96 -446 1404 166 94 107 chr1 30465488 30465664 -251728000 + LTR29 LTR ERV1 160 337 -285 1300 207 81 0 chr1 30465664 30465935 -251727729 - AluJo SINE Alu -19 293 1 1404 166 94 107 chr1 30465935 30466227 -251727437 + LTR29 LTR ERV1 337 622 0 693 161 18 0 chr1 30466228 30466340 -251727324 + MER21-int LTR ERV1 3835 3948 -2810 2403 141 48 52 chr1 30466340 30466800 -251726864 + LTR32 LTR ERVL 14 471 0 1124 213 8 46 chr1 30466800 30467063 -251726601 + MER21-int LTR ERV1 3943 4195 -2563 342 107 27 27 chr1 30469409 30469484 -251724180 + GA-rich Low_complexity Low_complexity 3 77 0 454 182 36 103 chr1 30469485 30469650 -251724014 + MER21-int LTR ERV1 1194 4233 -2525 * 1599 200 21 8 chr1 30469617 30469657 -251724007 + MER21-int LTR ERV1 1314 1352 -5406 2270 104 0 0 chr1 30469657 30469966 -251723698 - AluSx SINE Alu -3 309 1 1599 200 21 8 chr1 30469966 30470266 -251723398 + MER21-int LTR ERV1 1352 4509 -2249 32 0 0 0 chr1 30471032 30471064 -251722600 + AT_rich Low_complexity Low_complexity 1 32 0 1069 130 125 0 chr1 30471070 30471254 -251722410 + AluJo SINE Alu 87 293 -19 2058 110 0 0 chr1 30471256 30471569 -251722095 + AluSx SINE Alu 1 313 0 752 183 14 7 chr1 30471589 30471731 -251721933 + AluJb SINE Alu 145 287 -25 564 88 0 0 chr1 30471748 30471828 -251721836 - L1MB5 LINE L1 -9 6165 6086 2136 104 7 0 chr1 30471829 30472126 -251721538 + AluSx SINE Alu 1 299 -13 2140 76 3 54 chr1 30472126 30472442 -251721222 + AluSx SINE Alu 1 301 -11 553 276 148 36 chr1 30472550 30472880 -251720784 - L2 LINE L2 -493 2821 2455 231 218 18 0 chr1 30472880 30472935 -251720729 - L2 LINE L2 0 3313 3258 285 283 109 51 chr1 30472991 30473129 -251720535 + MIR3 SINE MIR 18 163 -45 183 318 24 12 chr1 30473193 30473278 -251720386 + MIR SINE MIR 59 144 -118 190 234 0 0 chr1 30473628 30473675 -251719989 + L2 LINE L2 2721 2767 -547 324 276 82 29 chr1 30473935 30474105 -251719559 + L2 LINE L2 2832 3010 -262 2369 89 0 3 chr1 30474127 30474440 -251719224 + AluSx SINE Alu 1 312 0 818 149 0 0 chr1 30474572 30474693 -251718971 + AluJo/FLAM SINE Alu 9 129 -183 1799 91 14 22 chr1 30474693 30474969 -251718695 - AluSp SINE Alu -19 294 21 768 251 170 115 chr1 30475071 30475522 -251718142 - L2 LINE L2 -1178 2136 1711 1950 113 7 24 chr1 30475522 30475673 -251717991 - AluSx SINE Alu -26 286 134 188 33 0 33 chr1 30475673 30475703 -251717961 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2318 58 7 3 chr1 30475705 30475997 -251717667 - AluSp SINE Alu -20 293 1 1950 113 7 24 chr1 30475997 30476133 -251717531 - AluSx SINE Alu -179 133 1 768 251 170 115 chr1 30476133 30476353 -251717311 - L2 LINE L2 -1603 1711 1428 1864 164 3 0 chr1 30476353 30476651 -251717013 - AluJb SINE Alu -13 299 1 1582 181 7 3 chr1 30476651 30476938 -251716726 - AluJo SINE Alu -18 294 6 4127 93 39 5 chr1 30477379 30477940 -251715724 - LTR19B LTR ERV1 0 580 1 1038 231 179 46 chr1 30478012 30478363 -251715301 + L2 LINE L2 2138 2535 -779 2519 225 78 14 chr1 30478481 30478806 -251714858 + Zaphod DNA AcHobo 39 342 -3689 2369 98 3 0 chr1 30478806 30479111 -251714553 + AluSp SINE Alu 1 306 -7 2519 225 78 14 chr1 30479111 30479501 -251714163 + Zaphod DNA AcHobo 342 800 -3231 1931 174 3 3 chr1 30479513 30479823 -251713841 - AluJb SINE Alu -2 310 1 2356 93 0 10 chr1 30479832 30480143 -251713521 - AluSg SINE Alu 0 310 3 1209 173 48 5 chr1 30480194 30480402 -251713262 - AluJo SINE Alu -12 300 84 817 203 66 16 chr1 30480799 30480981 -251712683 + MER58A DNA MER1_type 1 191 -33 558 262 182 19 chr1 30481689 30481903 -251711761 + MIR SINE MIR 14 262 0 2211 108 14 0 chr1 30481993 30482281 -251711383 - AluSx SINE Alu -20 292 1 1062 133 28 11 chr1 30482281 30482461 -251711203 - THE1B LTR MaLR -181 183 1 10264 66 25 113 chr1 30482461 30483554 -251710110 - THE1B-int LTR MaLR 0 1580 695 2408 103 3 0 chr1 30483554 30483866 -251709798 - AluSp SINE Alu 0 313 1 10264 66 25 113 chr1 30483866 30484505 -251709159 - THE1B-int LTR MaLR -885 695 1 2423 120 19 25 chr1 30484505 30484871 -251708793 - THE1B LTR MaLR 0 364 1 950 128 0 0 chr1 30484885 30485018 -251708646 - FLAM_C SINE Alu 0 133 1 798 256 55 35 chr1 30485020 30485332 -251708332 - LTR24B LTR ERV1 -189 387 70 1832 190 103 22 chr1 30485336 30485784 -251707880 + LTR2B LTR ERV1 7 490 0 3203 162 75 32 chr1 30485849 30486312 -251707352 - MER21-int LTR ERV1 -1742 2449 1948 2070 143 0 16 chr1 30486312 30486627 -251707037 - AluSx SINE Alu -2 310 1 3203 162 75 32 chr1 30486627 30486816 -251706848 - MER21-int LTR ERV1 -2243 1948 1769 942 245 122 15 chr1 30486925 30487260 -251706404 + L2 LINE L2 2170 2540 -774 939 206 34 22 chr1 30487261 30487290 -251706374 + L1MB4 LINE L1 5060 5087 -1059 1951 146 20 3 chr1 30487290 30487591 -251706073 - AluSx SINE Alu -6 306 1 939 206 34 22 chr1 30487591 30487828 -251705836 + L1MB4 LINE L1 5087 5329 -817 953 151 0 26 chr1 30487828 30487980 -251705684 + FRAM SINE Alu 13 160 -16 688 111 1 120 chr1 30488027 30488196 -251705468 + MLT1A1 LTR MaLR 227 365 0 1276 142 83 35 chr1 30488196 30488484 -251705180 + L1MB4 LINE L1 5729 6030 -150 1748 128 3 84 chr1 30488484 30488804 -251704860 - AluJb SINE Alu -17 295 2 819 300 47 25 chr1 30488866 30489356 -251704308 - L1M4 LINE L1 -893 5253 4753 2175 108 0 0 chr1 30489357 30489656 -251704008 - AluSx SINE Alu 0 301 3 1170 141 0 22 chr1 30489662 30489846 -251703818 - AluSc SINE Alu -1 308 129 2289 112 3 0 chr1 30489852 30490155 -251703509 - AluSx SINE Alu -8 304 1 1112 128 0 0 chr1 30490280 30490429 -251703235 + AluJb SINE Alu 132 280 -32 5028 121 47 87 chr1 30490471 30491493 -251702171 - MER21-int LTR ERV1 -51 4140 3160 1330 137 0 15 chr1 30491502 30491699 -251701965 - AluJb SINE Alu 0 312 119 818 131 7 15 chr1 30491701 30491838 -251701826 - AluSg/x SINE Alu -12 298 163 2199 84 47 7 chr1 30491858 30492157 -251701507 - AluY SINE Alu 0 311 1 851 79 0 0 chr1 30492192 30492306 -251701358 + L1PA8 LINE L1 6058 6171 -1 2209 122 14 0 chr1 30492332 30492626 -251701038 + AluSx SINE Alu 1 298 -14 553 165 0 0 chr1 30492683 30492774 -251700890 + MER21B LTR ERV1 288 378 -485 377 171 71 0 chr1 30492785 30492855 -251700809 + MER21B LTR ERV1 34 108 -755 783 212 0 0 chr1 30492855 30492987 -251700677 - FLAM_A SINE Alu -5 137 6 2613 142 172 75 chr1 30492987 30493526 -251700138 + MER21B LTR ERV1 94 579 -284 1997 122 39 0 chr1 30493526 30493812 -251699852 + AluJb SINE Alu 1 297 -15 887 75 0 0 chr1 30493812 30493919 -251699745 + U6 snRNA snRNA 1 107 0 2613 142 172 75 chr1 30493919 30493949 -251699715 + MER21B LTR ERV1 579 605 -258 2449 81 3 3 chr1 30493949 30494258 -251699406 + AluSp SINE Alu 1 309 -4 2613 142 172 75 chr1 30494258 30494367 -251699297 + MER21B LTR ERV1 605 840 -23 2341 64 0 0 chr1 30494371 30494681 -251698983 + AluY SINE Alu 1 310 0 1760 186 0 3 chr1 30495226 30495516 -251698148 + AluJo SINE Alu 1 289 -23 2275 109 6 10 chr1 30495546 30495859 -251697805 + AluSx SINE Alu 1 312 0 2175 318 86 13 chr1 30495886 30496220 -251697444 + ERVL LTR ERVL 3494 3802 -1962 207 0 0 0 chr1 30496220 30496243 -251697421 + (GA)n Simple_repeat Simple_repeat 2 24 0 2175 318 86 13 chr1 30496243 30496976 -251696688 + ERVL LTR ERVL 3802 4639 -1125 302 297 47 47 chr1 30496980 30497128 -251696536 + MIR SINE MIR 115 262 0 228 241 103 17 chr1 30497808 30497866 -251695798 + MIR SINE MIR 85 147 -61 2445 69 0 20 chr1 30498000 30498306 -251695358 + AluY SINE Alu 1 300 -11 652 239 39 33 chr1 30498322 30498502 -251695162 + MIR SINE MIR 37 217 -45 2669 175 55 57 chr1 30498704 30499099 -251694565 + MER21B LTR ERV1 1 395 -468 1827 180 0 0 chr1 30499099 30499394 -251694270 + AluJb SINE Alu 1 295 -17 2669 175 55 57 chr1 30499394 30499722 -251693942 + MER21B LTR ERV1 395 805 -58 441 225 16 93 chr1 30499861 30500043 -251693621 - MIR SINE MIR -10 252 85 455 382 0 0 chr1 30500440 30500724 -251692940 + G-rich Low_complexity Low_complexity 1 284 0 307 261 0 0 chr1 30501463 30501528 -251692136 - MIR SINE MIR -108 154 90 2302 95 0 13 chr1 30501558 30501863 -251691801 - AluSx SINE Alu -11 301 1 277 344 10 0 chr1 30501863 30501959 -251691705 - MIR SINE MIR -150 112 16 1552 170 18 43 chr1 30502242 30502524 -251691140 - AluJo SINE Alu -31 281 7 222 184 41 0 chr1 30503057 30503106 -251690558 + MIR3 SINE MIR 106 156 -52 1009 181 23 6 chr1 30503354 30503525 -251690139 - FAM SINE Alu 0 175 2 311 298 93 19 chr1 30503649 30503854 -251689810 + L2 LINE L2 2830 3049 -223 204 244 0 0 chr1 30504180 30504221 -251689443 + MIR SINE MIR 222 262 0 2018 137 7 7 chr1 30504850 30505143 -251688521 - AluSx SINE Alu -19 293 1 2269 112 0 7 chr1 30505267 30505572 -251688092 - AluSx SINE Alu -9 303 1 662 257 6 17 chr1 30505648 30505827 -251687837 - MARNA DNA Mariner -186 400 224 1619 63 0 0 chr1 30505836 30506025 -251687639 + AluSg/x SINE Alu 112 300 -12 1142 132 25 0 chr1 30507424 30507583 -251686081 - AluJb SINE Alu -15 297 135 2231 111 0 26 chr1 30507584 30507891 -251685773 - AluSg1 SINE Alu -10 299 1 611 166 17 9 chr1 30507892 30507997 -251685667 - L1P5 LINE L1 -367 5784 5681 2437 91 0 7 chr1 30507997 30508305 -251685359 - AluSc SINE Alu -3 306 1 2158 132 0 3 chr1 30508307 30508603 -251685061 - AluSx SINE Alu -17 295 1 611 166 17 9 chr1 30508603 30508626 -251685038 - L1P5 LINE L1 -470 5681 5653 1226 157 29 9 chr1 30508628 30508838 -251684826 + MER58A DNA MER1_type 11 224 0 2250 113 7 7 chr1 30508859 30509161 -251684503 + AluSg SINE Alu 1 302 -8 262 157 39 0 chr1 30509222 30509273 -251684391 + L1M4 LINE L1 4963 5015 -1131 315 234 139 3 chr1 30509557 30509682 -251683982 + MIR SINE MIR 46 192 -69 262 279 82 0 chr1 30509746 30509807 -251683857 + MIR SINE MIR 29 94 -114 23 0 0 0 chr1 30509835 30509858 -251683806 + AT_rich Low_complexity Low_complexity 1 23 0 1222 156 0 70 chr1 30510385 30510629 -251683035 + AluSg/x SINE Alu 85 311 -1 2176 108 0 0 chr1 30510635 30510934 -251682730 + AluSx SINE Alu 3 301 0 1196 273 68 47 chr1 30510935 30511488 -251682176 + L1MC4a LINE L1 4753 5293 -853 2627 61 0 6 chr1 30511488 30511801 -251681863 + AluSp SINE Alu 1 311 -2 1196 273 68 47 chr1 30511801 30511924 -251681740 + L1MC4a LINE L1 5293 5012 -1134 1880 205 28 15 chr1 30511924 30512315 -251681349 + MSTD LTR MaLR 1 396 0 1196 273 68 47 chr1 30512315 30512712 -251680952 + L1MC4a LINE L1 5011 5398 -748 2314 110 3 0 chr1 30512734 30513034 -251680630 + AluSp SINE Alu 1 301 -12 1806 98 53 56 chr1 30513047 30513374 -251680290 + AluSx SINE Alu 1 326 0 773 213 234 60 chr1 30513375 30513893 -251679771 + L2 LINE L2 2718 3313 0 271 229 12 48 chr1 30513876 30513959 -251679705 + MIR SINE MIR 172 251 -11 * 187 333 67 17 chr1 30514292 30514412 -251679252 - L3b LINE CR1 -189 1394 1269 513 270 92 17 chr1 30514751 30514925 -251678739 + MIR SINE MIR 76 262 0 1746 196 0 0 chr1 30515616 30515897 -251677767 + AluJo SINE Alu 15 295 -17 395 254 69 47 chr1 30516046 30516224 -251677440 + MIR3 SINE MIR 11 184 -36 271 257 158 10 chr1 30516545 30516646 -251677018 + MIR SINE MIR 35 150 -112 2230 96 0 14 chr1 30516647 30516938 -251676726 + AluSx SINE Alu 1 287 -25 414 0 0 0 chr1 30516941 30516987 -251676677 + (TG)n Simple_repeat Simple_repeat 2 47 0 550 280 89 0 chr1 30517251 30517419 -251676245 - MIR SINE MIR -50 212 30 477 249 185 21 chr1 30517448 30517637 -251676027 + MIR SINE MIR 37 256 -6 403 248 109 0 chr1 30519918 30520019 -251673645 + MIR SINE MIR 48 159 -103 329 133 17 50 chr1 30520075 30520135 -251673529 - L2 LINE L2 0 3313 3256 435 311 113 0 chr1 30520268 30520445 -251673219 - MIR SINE MIR -15 247 51 346 268 79 8 chr1 30520642 30520761 -251672903 - MIR3 SINE MIR -38 170 44 313 316 32 51 chr1 30521014 30521172 -251672492 - L3 LINE CR1 -141 1436 1282 219 331 81 8 chr1 30521315 30521439 -251672225 - L2 LINE L2 -20 3293 3161 236 274 0 27 chr1 30521469 30521542 -251672122 - L1MC4 LINE L1 -372 7670 7600 2209 79 18 7 chr1 30521572 30521880 -251671784 - AluSg SINE Alu 0 311 1 2808 22 0 6 chr1 30522037 30522349 -251671315 - AluY SINE Alu -1 310 1 1002 213 22 70 chr1 30522400 30522564 -251671100 + MLT1A2 LTR MaLR 5 152 -222 1743 166 21 10 chr1 30522564 30522853 -251670811 + AluJb SINE Alu 1 292 -20 1002 213 22 70 chr1 30522853 30522961 -251670703 + MLT1A2 LTR MaLR 152 264 -110 2095 148 0 3 chr1 30522977 30523280 -251670384 - AluSx SINE Alu -2 310 9 1990 135 3 39 chr1 30523348 30523659 -251670005 + AluSx SINE Alu 1 300 -12 225 204 19 0 chr1 30523665 30523719 -251669945 - L1MC4 LINE L1 -868 7174 7120 541 212 0 17 chr1 30523733 30523851 -251669813 - MLT1B LTR MaLR -68 322 207 2247 127 0 3 chr1 30523861 30524168 -251669496 - AluSq SINE Alu -5 308 3 2388 96 0 3 chr1 30524168 30524470 -251669194 - AluSq SINE Alu -12 301 1 238 300 100 29 chr1 30524574 30524714 -251668950 - L2 LINE L2 -1605 1709 1560 292 293 94 26 chr1 30524714 30524905 -251668759 - L2 LINE L2 -1943 1371 1168 1127 76 0 0 chr1 30524916 30525048 -251668616 + AluSp SINE Alu 1 132 -181 1547 110 4 22 chr1 30525058 30525286 -251668378 + AluSp SINE Alu 85 308 -5 279 301 74 59 chr1 30525293 30525496 -251668168 - L2 LINE L2 -2179 1135 930 863 149 0 144 chr1 30525535 30525730 -251667934 - FRAM SINE Alu -10 166 1 243 0 0 0 chr1 30525807 30525834 -251667830 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 779 240 109 13 chr1 30525839 30525980 -251667684 - MIR SINE MIR -10 252 79 2218 108 24 0 chr1 30525980 30526276 -251667388 + AluSx SINE Alu 1 303 -9 779 240 109 13 chr1 30526276 30526363 -251667301 - MIR SINE MIR -183 79 2 481 317 68 78 chr1 30526469 30526962 -251666702 - L2 LINE L2 -128 3185 2696 2142 99 3 0 chr1 30526971 30527263 -251666401 - AluSx SINE Alu -19 293 1 287 316 0 22 chr1 30527282 30527421 -251666243 + (TTCA)n Simple_repeat Simple_repeat 1 136 0 207 357 132 29 chr1 30527430 30527710 -251665954 - L2 LINE L2 -19 3253 2945 186 43 0 0 chr1 30528103 30528126 -251665538 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 225 0 0 0 chr1 30528125 30528150 -251665514 + (CA)n Simple_repeat Simple_repeat 1 25 0 2506 58 3 0 chr1 30528441 30528751 -251664913 - AluY SINE Alu 0 311 1 1680 174 6 19 chr1 30528800 30529111 -251664553 - AluJo SINE Alu -5 307 1 185 293 13 27 chr1 30529298 30529373 -251664291 + MIR SINE MIR 52 125 -83 21 36 0 0 chr1 30530545 30530573 -251663091 + GC_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 30530677 30530706 -251662958 + GC_rich Low_complexity Low_complexity 1 29 0 407 262 10 0 chr1 30530848 30530951 -251662713 + MIR SINE MIR 40 143 -65 853 149 117 70 chr1 30531089 30531303 -251662361 + AluJo SINE Alu 81 304 -8 2208 115 0 3 chr1 30532431 30532743 -251660921 + AluSx SINE Alu 1 311 -1 499 289 98 15 chr1 30533201 30533405 -251660259 - MIR SINE MIR -10 252 32 227 309 164 40 chr1 30533669 30533821 -251659843 + MIR3 SINE MIR 16 186 -22 218 338 13 0 chr1 30533899 30533976 -251659688 - MIR SINE MIR -125 137 60 1629 99 36 0 chr1 30534395 30534516 -251659148 + MER30 DNA MER1_type 1 135 -95 2256 89 0 3 chr1 30534516 30534818 -251658846 + AluY SINE Alu 1 301 -10 1629 99 36 0 chr1 30534818 30534918 -251658746 + MER30 DNA MER1_type 135 230 0 591 335 69 0 chr1 30534940 30535185 -251658479 + MIR SINE MIR 1 262 0 334 316 79 55 chr1 30535322 30535478 -251658186 - L1M4c LINE L1 -1305 1438 1287 814 165 154 11 chr1 30535478 30535634 -251658030 - MER63A DNA MER1_type -1478 210 23 222 37 0 0 chr1 30535634 30535661 -251658003 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 814 165 154 11 chr1 30535661 30535686 -251657978 - MER63A DNA MER1_type -1665 23 3 334 316 79 55 chr1 30535686 30535845 -251657819 - L1M4c LINE L1 -1456 1287 939 384 59 0 0 chr1 30536301 30536352 -251657312 + (TG)n Simple_repeat Simple_repeat 2 52 0 896 159 96 0 chr1 30536512 30536669 -251656995 - AluJo SINE Alu -21 291 120 323 119 34 0 chr1 30536677 30536736 -251656928 - AluJo SINE Alu 0 302 242 993 181 6 0 chr1 30536736 30536896 -251656768 - AluJo SINE Alu -151 161 1 622 162 39 78 chr1 30536897 30536960 -251656704 + MIR SINE MIR 88 152 -110 2140 119 0 0 chr1 30536960 30537255 -251656409 + AluSq SINE Alu 1 295 -18 622 162 39 78 chr1 30537255 30537370 -251656294 + MIR SINE MIR 152 259 -3 279 0 0 0 chr1 30537390 30537421 -251656243 + (TG)n Simple_repeat Simple_repeat 2 32 0 1812 132 13 42 chr1 30537673 30537984 -251655680 - AluJo SINE Alu -10 302 1 2174 96 0 0 chr1 30538900 30539210 -251654454 - AluSg SINE Alu 0 310 1 293 286 0 0 chr1 30539992 30540083 -251653581 + (CA)n Simple_repeat Simple_repeat 1 91 0 438 286 0 0 chr1 30540116 30540374 -251653290 + (CA)n Simple_repeat Simple_repeat 1 258 0 1297 149 9 18 chr1 30540415 30540637 -251653027 + AluJo SINE Alu 85 304 -8 2379 89 0 6 chr1 30542063 30542377 -251651287 + AluSx SINE Alu 1 312 0 226 292 69 90 chr1 30542506 30542560 -251651104 - L2 LINE L2 -459 2855 2801 1768 125 86 4 chr1 30542560 30542839 -251650825 - AluSx SINE Alu -10 302 1 226 292 69 90 chr1 30542839 30542928 -251650736 - L2 LINE L2 -513 2801 2715 618 290 145 0 chr1 30543471 30543671 -251649993 - MIR SINE MIR 0 262 34 1333 156 152 30 chr1 30543797 30544126 -251649538 - AluJb SINE Alu 0 362 1 247 212 8 121 chr1 30544144 30544244 -251649420 - MIR SINE MIR -12 250 140 1784 181 0 10 chr1 30544244 30544537 -251649127 - AluJo SINE Alu -22 290 1 2085 127 0 0 chr1 30544543 30544834 -251648830 - AluSx SINE Alu -21 291 1 247 212 8 121 chr1 30544834 30544922 -251648742 - MIR SINE MIR -127 135 82 286 313 117 17 chr1 30544926 30545156 -251648508 - L2 LINE L2 -755 2559 2307 246 284 0 14 chr1 30545226 30545300 -251648364 + MER91A DNA MER1_type 123 195 -1 207 294 174 66 chr1 30545315 30545378 -251648286 - L2 LINE L2 -1060 2254 2199 2186 103 0 0 chr1 30545378 30545668 -251647996 + AluSx SINE Alu 1 290 -22 207 294 174 66 chr1 30545668 30546288 -251647376 - L2 LINE L2 -1115 2199 1497 296 298 45 23 chr1 30546381 30546571 -251647093 + MIR SINE MIR 14 260 -2 313 336 100 22 chr1 30546663 30546892 -251646772 - L3 LINE CR1 -419 1158 912 203 301 129 33 chr1 30546942 30547214 -251646450 - L2 LINE L2 -1128 2186 1889 * 369 229 178 0 chr1 30547149 30547267 -251646397 + MIR3 SINE MIR 7 145 -63 309 292 101 0 chr1 30547368 30547508 -251646156 - MIR SINE MIR -8 254 99 304 257 105 40 chr1 30548017 30548169 -251645495 - MIR3 SINE MIR -29 179 18 613 311 89 22 chr1 30548318 30548678 -251644986 - L2 LINE L2 -543 2771 2388 209 346 56 56 chr1 30548691 30548905 -251644759 + L2 LINE L2 2951 3164 -108 196 291 185 20 chr1 30550096 30550247 -251643417 + MIR3 SINE MIR 33 208 0 493 220 10 0 chr1 30550574 30550674 -251642990 + MIR SINE MIR 48 148 -114 225 225 0 0 chr1 30550690 30550730 -251642934 - L2 LINE L2 -10 3262 3223 984 243 72 0 chr1 30550755 30550990 -251642674 + MIR SINE MIR 11 262 0 2224 93 27 0 chr1 30551146 30551446 -251642218 - AluSx SINE Alu -2 310 3 279 247 32 32 chr1 30552049 30552142 -251641522 - MIR3 SINE MIR -4 204 112 264 259 53 107 chr1 30553329 30553460 -251640204 - L2 LINE L2 -7 3265 3142 440 275 137 17 chr1 30553469 30553702 -251639962 - MIR SINE MIR 0 262 2 366 23 0 0 chr1 30553734 30553777 -251639887 + (TG)n Simple_repeat Simple_repeat 1 43 0 603 201 22 22 chr1 30554109 30554248 -251639416 + MIR SINE MIR 20 158 -104 616 300 109 0 chr1 30554266 30554486 -251639178 - MIR SINE MIR -7 255 12 562 256 69 6 chr1 30555027 30555187 -251638477 - MIR SINE MIR -52 210 41 247 279 99 23 chr1 30555479 30555651 -251638013 - L2 LINE L2 -271 3001 2817 581 118 16 64 chr1 30555840 30556027 -251637637 + (CA)n Simple_repeat Simple_repeat 2 179 0 347 324 92 56 chr1 30556167 30556618 -251637046 - L2 LINE L2 -82 3190 2714 2214 88 7 0 chr1 30556618 30556913 -251636751 - AluSx SINE Alu -15 297 1 347 324 92 56 chr1 30556913 30556981 -251636683 - L2 LINE L2 -558 2714 2650 195 299 117 0 chr1 30557657 30557734 -251635930 + MIR SINE MIR 59 144 -118 273 286 267 6 chr1 30557938 30558099 -251635565 - MIR SINE MIR -25 237 35 326 271 160 42 chr1 30559687 30559831 -251633833 + MIR SINE MIR 6 166 -96 33 43 0 0 chr1 30560598 30560645 -251633019 + GC_rich Low_complexity Low_complexity 1 47 0 261 226 0 0 chr1 30560746 30560851 -251632813 + GA-rich Low_complexity Low_complexity 1 105 0 215 81 54 0 chr1 30560905 30560942 -251632722 + GA-rich Low_complexity Low_complexity 2 40 0 278 263 10 10 chr1 30561009 30561108 -251632556 + GA-rich Low_complexity Low_complexity 1 99 0 21 36 0 0 chr1 30561246 30561274 -251632390 + GC_rich Low_complexity Low_complexity 1 28 0 266 85 0 21 chr1 30561676 30561723 -251631941 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 21 95 0 0 chr1 30561739 30561802 -251631862 + GC_rich Low_complexity Low_complexity 1 63 0 200 291 13 13 chr1 30562533 30562612 -251631052 + G-rich Low_complexity Low_complexity 4 82 0 273 385 30 24 chr1 30565179 30565348 -251628316 - MIR3 SINE MIR -3 205 36 397 299 19 0 chr1 30566823 30567013 -251626651 + (CAGA)n Simple_repeat Simple_repeat 1 193 0 180 277 0 0 chr1 30567015 30567109 -251626555 + GA-rich Low_complexity Low_complexity 1 94 0 180 0 0 0 chr1 30567472 30567492 -251626172 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 213 119 0 0 chr1 30567491 30567533 -251626131 + (CA)n Simple_repeat Simple_repeat 1 42 0 268 198 9 72 chr1 30567991 30568102 -251625562 + (TG)n Simple_repeat Simple_repeat 2 105 0 231 61 0 0 chr1 30569385 30569418 -251624246 + (CA)n Simple_repeat Simple_repeat 2 34 0 248 257 54 14 chr1 30572135 30572209 -251621455 - MIR3 SINE MIR -54 154 78 777 292 69 4 chr1 30572954 30573187 -251620477 - MIR SINE MIR -1 261 14 398 238 68 54 chr1 30573391 30573538 -251620126 - MIR3 SINE MIR -24 184 36 205 308 0 17 chr1 30575474 30575591 -251618073 + (CAGAGA)n Simple_repeat Simple_repeat 6 120 0 369 277 116 0 chr1 30576437 30576549 -251617115 - L2 LINE L2 0 3313 3189 235 218 74 23 chr1 30576992 30577080 -251616584 + MIR SINE MIR 59 161 -47 221 269 0 0 chr1 30577158 30577210 -251616454 - L2 LINE L2 -15 3257 3206 319 350 0 0 chr1 30577614 30577716 -251615948 + MIR3 SINE MIR 54 156 -52 519 253 96 0 chr1 30578912 30579058 -251614606 - MIR SINE MIR -69 193 34 736 299 63 0 chr1 30579355 30579576 -251614088 - MIR SINE MIR -5 257 23 1251 149 47 9 chr1 30579586 30579800 -251613864 - AluJb SINE Alu -1 311 90 1455 73 0 0 chr1 30579801 30579978 -251613686 - AluSq SINE Alu -136 177 1 532 259 54 18 chr1 30580398 30580564 -251613100 + MIR SINE MIR 81 252 -10 583 239 144 22 chr1 30580638 30580818 -251612846 + MIR SINE MIR 3 204 -58 239 294 15 0 chr1 30580809 30580877 -251612787 - L2 LINE L2 0 3313 3245 * 375 251 75 22 chr1 30581010 30581214 -251612450 - MIR SINE MIR 0 262 5 181 291 150 36 chr1 30581417 30581637 -251612027 - L2 LINE L2 -183 3089 2845 1562 111 172 8 chr1 30581701 30581962 -251611702 + AluSg SINE Alu 1 304 -6 256 325 264 15 chr1 30581981 30582178 -251611486 + MIR SINE MIR 5 250 -12 * 691 276 36 23 chr1 30582171 30582392 -251611272 - L2 LINE L2 0 3313 3090 218 343 29 20 chr1 30582480 30582582 -251611082 - MIR SINE MIR -50 212 110 231 390 44 26 chr1 30583054 30583282 -251610382 - L2 LINE L2 -505 2809 2578 32 0 0 0 chr1 30583510 30583542 -251610122 + AT_rich Low_complexity Low_complexity 1 32 0 1110 130 125 0 chr1 30583548 30583732 -251609932 + AluJo SINE Alu 87 293 -19 2283 86 3 0 chr1 30583734 30584025 -251609639 + AluSx SINE Alu 1 292 -20 539 271 182 19 chr1 30584115 30584329 -251609335 - MIR SINE MIR 0 262 14 770 214 66 16 chr1 30585037 30585219 -251608445 - MER58A DNA MER1_type -33 191 1 1153 176 48 5 chr1 30585616 30585826 -251607838 + AluJo SINE Alu 84 302 -10 1122 155 57 67 chr1 30585855 30585875 -251607789 - MER33 DNA MER1_type -2272 313 294 2199 98 0 3 chr1 30585875 30586171 -251607493 + AluSg SINE Alu 3 297 -13 1122 155 57 67 chr1 30586171 30586259 -251607405 - MER33 DNA MER1_type -2291 294 207 2211 106 3 0 chr1 30586259 30586561 -251607103 - AluSx SINE Alu -9 303 1 1122 155 57 67 chr1 30586561 30586767 -251606897 - MER33 DNA MER1_type -2378 207 1 462 264 168 6 chr1 30588240 30588407 -251605257 + MIR SINE MIR 13 206 -56 231 222 56 67 chr1 30588515 30588605 -251605059 - MIR3 SINE MIR -41 167 79 188 211 75 6 chr1 30588622 30588681 -251604983 - MIR3 SINE MIR -51 157 117 24 77 0 0 chr1 30589099 30589151 -251604513 + GC_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr1 30589183 30589216 -251604448 + GC_rich Low_complexity Low_complexity 1 33 0 438 272 62 12 chr1 30590322 30590484 -251603180 + MIR SINE MIR 68 237 -25 373 242 11 11 chr1 30590957 30591052 -251602612 + MIR SINE MIR 70 164 -98 493 252 0 24 chr1 30591526 30591653 -251602011 + MIR3 SINE MIR 81 204 -4 234 277 299 7 chr1 30594371 30594508 -251599156 + MIR3 SINE MIR 16 192 -16 346 270 79 0 chr1 30595472 30595561 -251598103 + MIR SINE MIR 90 185 -77 226 127 164 0 chr1 30595613 30595668 -251597996 - MIR SINE MIR -168 94 31 27 0 0 0 chr1 30596081 30596108 -251597556 + GC_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr1 30596139 30596175 -251597489 + GC_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 30596257 30596289 -251597375 + GC_rich Low_complexity Low_complexity 1 32 0 188 111 28 0 chr1 30598168 30598204 -251595460 + CT-rich Low_complexity Low_complexity 2 38 0 439 329 4 7 chr1 30598396 30598619 -251595045 + CT-rich Low_complexity Low_complexity 1 222 0 314 301 47 76 chr1 30599360 30599596 -251594068 - L1M4b LINE L1 -6188 671 443 258 227 202 25 chr1 30599884 30600003 -251593661 + MIR3 SINE MIR 46 185 -23 234 311 85 9 chr1 30600241 30600347 -251593317 + MIR SINE MIR 19 132 -76 203 240 60 0 chr1 30600397 30600447 -251593217 - MIR SINE MIR -92 170 118 289 333 56 0 chr1 30600584 30600692 -251592972 - MIR SINE MIR -91 117 10 216 0 0 0 chr1 30601500 30601524 -251592140 + (TG)n Simple_repeat Simple_repeat 2 25 0 183 80 0 0 chr1 30601548 30601573 -251592091 + (TG)n Simple_repeat Simple_repeat 2 26 0 192 179 0 0 chr1 30601599 30601638 -251592026 + (TG)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr1 30601662 30601687 -251591977 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 167 0 0 chr1 30601713 30601755 -251591909 + (CGTG)n Simple_repeat Simple_repeat 1 42 0 372 234 0 0 chr1 30603052 30603193 -251590471 + CT-rich Low_complexity Low_complexity 2 142 0 209 159 23 0 chr1 30603889 30603933 -251589731 + GA-rich Low_complexity Low_complexity 2 46 0 232 205 0 72 chr1 30603939 30604022 -251589642 + (CA)n Simple_repeat Simple_repeat 1 77 0 216 0 0 0 chr1 30604644 30604668 -251588996 + (CA)n Simple_repeat Simple_repeat 1 24 0 424 274 104 7 chr1 30605296 30605431 -251588233 - MIR SINE MIR -110 152 5 1871 122 0 31 chr1 30605518 30605804 -251587860 + AluJo SINE Alu 6 282 -30 212 283 17 0 chr1 30606311 30606371 -251587293 - MIR3 SINE MIR -47 161 101 186 265 0 0 chr1 30608176 30608225 -251585439 + MIR SINE MIR 78 126 -136 372 181 96 14 chr1 30609495 30609582 -251584082 + MIR3 SINE MIR 65 161 -47 267 330 9 27 chr1 30609599 30609711 -251583953 + MER5A DNA MER1_type 45 154 -35 495 246 66 36 chr1 30609800 30610017 -251583647 + MIR SINE MIR 8 222 -40 240 167 21 21 chr1 30610309 30610357 -251583307 + MIR SINE MIR 35 82 -180 470 367 68 11 chr1 30610364 30610628 -251583036 - L2 LINE L2 -6 3307 3029 306 262 28 121 chr1 30610762 30610780 -251582884 - L2 LINE L2 -1 3271 3253 1963 138 3 13 chr1 30610780 30611085 -251582579 - AluJo SINE Alu -10 302 1 306 262 28 121 chr1 30611085 30611207 -251582457 - L2 LINE L2 -19 3253 3144 352 318 23 8 chr1 30611213 30611342 -251582322 + MIR SINE MIR 132 262 0 632 280 22 11 chr1 30611476 30611658 -251582006 + MIR SINE MIR 65 248 -14 2059 125 7 0 chr1 30612172 30612468 -251581196 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 30612712 30612734 -251580930 + GC_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 30612836 30612865 -251580799 + GC_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 30616006 30616027 -251577637 + (TCC)n Simple_repeat Simple_repeat 3 23 0 460 287 42 30 chr1 30618918 30619085 -251574579 + MIR3 SINE MIR 18 186 -22 435 313 223 22 chr1 30619532 30620109 -251573555 - L2 LINE L2 0 3272 2572 205 315 115 42 chr1 30620377 30620542 -251573122 - L2 LINE L2 -25 3288 3112 253 304 122 20 chr1 30620679 30620827 -251572837 - MIR SINE MIR -79 183 21 233 348 36 43 chr1 30620765 30620903 -251572761 + MIR3 SINE MIR 32 168 -40 * 2132 107 7 7 chr1 30620906 30621206 -251572458 - AluSg SINE Alu -10 300 1 294 339 27 0 chr1 30621252 30621364 -251572300 - L2 LINE L2 -226 3046 2932 336 311 198 14 chr1 30622134 30622346 -251571318 + MIR SINE MIR 8 258 -4 296 289 48 19 chr1 30622807 30622911 -251570753 - L2 LINE L2 -13 3259 3153 2271 93 0 3 chr1 30622940 30623240 -251570424 + AluSq SINE Alu 2 300 -13 2248 116 0 0 chr1 30623250 30623560 -251570104 + AluSx SINE Alu 1 310 -2 225 0 0 0 chr1 30623842 30623867 -251569797 + (T)n Simple_repeat Simple_repeat 1 25 0 268 258 117 39 chr1 30624175 30624303 -251569361 + L2 LINE L2 2933 3070 -202 198 363 73 50 chr1 30624619 30624798 -251568866 - MIR3 SINE MIR -15 193 11 195 100 0 0 chr1 30624875 30624905 -251568759 + (GA)n Simple_repeat Simple_repeat 1 30 0 203 268 56 14 chr1 30624916 30624987 -251568677 - MIR3 SINE MIR -52 156 83 2361 87 0 0 chr1 30625125 30625423 -251568241 + AluSg SINE Alu 1 298 -12 1981 132 13 10 chr1 30625430 30625741 -251567923 + AluJo SINE Alu 1 312 0 329 240 32 96 chr1 30625989 30626062 -251567602 - MIR3 SINE MIR -18 190 127 1866 172 0 0 chr1 30626062 30626365 -251567299 + AluJb SINE Alu 9 311 -1 329 240 32 96 chr1 30626365 30626416 -251567248 - MIR3 SINE MIR -81 127 74 2178 102 6 10 chr1 30626436 30626749 -251566915 - AluSx SINE Alu 0 312 1 404 312 30 55 chr1 30627435 30627634 -251566030 + L2 LINE L2 3042 3235 -37 705 279 92 18 chr1 30629451 30629680 -251563984 - MIR SINE MIR 0 262 17 198 154 26 0 chr1 30629755 30629794 -251563870 - MIR SINE MIR -121 141 102 217 213 0 21 chr1 30630186 30630233 -251563431 + GA-rich Low_complexity Low_complexity 2 47 0 291 130 0 0 chr1 30630566 30630620 -251563044 + (A)n Simple_repeat Simple_repeat 1 54 0 219 258 144 23 chr1 30631968 30632100 -251561564 - L2 LINE L2 -210 3062 2915 273 239 87 61 chr1 30633105 30633246 -251560418 - MIR SINE MIR -59 149 45 838 163 0 0 chr1 30633253 30633421 -251560243 - FLAM_C SINE Alu 0 168 1 2238 69 0 7 chr1 30633448 30633738 -251559926 + AluY SINE Alu 2 289 -22 2133 88 33 16 chr1 30633765 30634070 -251559594 - AluSg SINE Alu 0 310 1 660 224 40 88 chr1 30634165 30634415 -251559249 - MIR SINE MIR -2 260 23 1088 135 6 0 chr1 30634444 30634614 -251559050 + AluSg/x SINE Alu 140 310 -2 707 251 54 0 chr1 30634687 30634854 -251558810 - MER5B DNA MER1_type -1 177 2 357 277 109 8 chr1 30635005 30635124 -251558540 - L2 LINE L2 -4 3309 3179 192 77 0 0 chr1 30635607 30635633 -251558031 + (GGGA)n Simple_repeat Simple_repeat 1 26 0 224 178 0 0 chr1 30686913 30686958 -251506706 + MIR SINE MIR 105 149 -113 252 0 0 0 chr1 30687798 30687826 -251505838 + (CA)n Simple_repeat Simple_repeat 1 28 0 201 333 7 0 chr1 30688007 30688145 -251505519 + (CA)n Simple_repeat Simple_repeat 2 140 0 1460 77 0 11 chr1 30688281 30688463 -251505201 + AluY SINE Alu 1 180 -131 474 231 29 81 chr1 30689603 30689776 -251503888 - L2 LINE L2 -2 3311 3148 2034 134 3 0 chr1 30689798 30690088 -251503576 + AluSq SINE Alu 1 291 -22 315 0 0 0 chr1 30690330 30690365 -251503299 + (CA)n Simple_repeat Simple_repeat 2 36 0 525 311 8 66 chr1 30690638 30690895 -251502769 - MLT1H LTR MaLR -285 264 23 312 254 0 0 chr1 30690914 30690985 -251502679 - MIR SINE MIR -108 154 84 192 349 40 16 chr1 30691687 30691813 -251501851 + L2 LINE L2 2848 2976 -337 784 175 12 19 chr1 30692115 30692477 -251501187 + GA-rich Low_complexity Low_complexity 1 359 0 1758 119 0 0 chr1 30692624 30692860 -251500804 - AluSq SINE Alu -76 237 2 21 0 0 0 chr1 30692927 30692948 -251500716 + AT_rich Low_complexity Low_complexity 1 21 0 2055 128 7 10 chr1 30692948 30693246 -251500418 - AluSx SINE Alu -14 298 2 2214 112 7 10 chr1 30693331 30693636 -251500028 - AluSx SINE Alu -8 304 1 204 40 0 0 chr1 30693636 30693661 -251500003 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2192 96 0 0 chr1 30693666 30693938 -251499726 - AluSc SINE Alu -37 272 1 1320 165 143 0 chr1 30694120 30694386 -251499278 + MER44D DNA MER2_type 36 609 0 412 263 167 44 chr1 30694526 30694819 -251498845 + L2 LINE L2 2644 2972 -342 186 324 141 0 chr1 30694975 30695046 -251498618 + L2 LINE L2 3156 3236 -36 949 136 0 0 chr1 30695109 30695241 -251498423 - FLAM_C SINE Alu 0 133 2 236 130 22 0 chr1 30695320 30695366 -251498298 + GA-rich Low_complexity Low_complexity 3 49 0 2374 84 7 0 chr1 30695372 30695668 -251497996 + AluSp SINE Alu 1 298 -15 2367 107 0 0 chr1 30696008 30696308 -251497356 - AluSx SINE Alu -12 300 1 2342 94 0 3 chr1 30696557 30696854 -251496810 - AluSx SINE Alu -16 296 1 199 336 135 0 chr1 30696857 30696961 -251496703 - L2 LINE L2 -13 3259 3142 2000 147 31 0 chr1 30697309 30697601 -251496063 - AluSx SINE Alu -11 301 1 1890 140 0 14 chr1 30699371 30699656 -251494008 - AluJb SINE Alu -13 299 19 307 316 132 13 chr1 30700774 30701002 -251492662 + MIR SINE MIR 2 256 -6 361 228 72 104 chr1 30701693 30701789 -251491875 - MIR SINE MIR 0 262 165 1701 197 3 0 chr1 30701789 30702083 -251491581 + AluJo SINE Alu 1 295 -17 2145 104 10 7 chr1 30702090 30702388 -251491276 + AluSq SINE Alu 1 299 -14 361 228 72 104 chr1 30702388 30702476 -251491188 - MIR SINE MIR -103 159 76 2321 97 3 0 chr1 30702539 30702837 -251490827 - AluSq SINE Alu -14 299 1 671 216 0 8 chr1 30702844 30702978 -251490686 - FLAM_A SINE Alu 0 133 1 1615 184 0 41 chr1 30702984 30703153 -251490511 - AluJb SINE Alu 0 302 149 2205 102 34 0 chr1 30703153 30703446 -251490218 - AluSg SINE Alu -7 303 1 1615 184 0 41 chr1 30703446 30703590 -251490074 - AluJb SINE Alu -153 149 1 2219 97 3 22 chr1 30703592 30703903 -251489761 - AluSg SINE Alu -5 305 1 284 167 33 0 chr1 30703914 30703974 -251489690 - L1MA3 LINE L1 0 6305 6244 293 119 0 0 chr1 30703977 30704019 -251489645 - FLAM SINE Alu -8 125 84 1663 182 3 33 chr1 30704046 30704212 -251489452 - AluJo SINE Alu -9 293 138 2323 98 23 0 chr1 30704212 30704390 -251489274 - AluSx SINE Alu 0 312 123 2693 36 0 3 chr1 30704390 30704696 -251488968 - AluY SINE Alu -6 305 1 2323 98 23 0 chr1 30704696 30704822 -251488842 - AluSx SINE Alu -189 123 1 1663 182 3 33 chr1 30704822 30704957 -251488707 - AluJo SINE Alu -164 138 1 631 132 108 78 chr1 30704958 30705000 -251488664 - MER7A DNA MER2_type -2906 132 93 1979 149 0 3 chr1 30705000 30705296 -251488368 + AluSq SINE Alu 1 295 -18 631 132 108 78 chr1 30705296 30705382 -251488282 - MER7A DNA MER2_type -2945 93 2 724 188 0 0 chr1 30705457 30705574 -251488090 + FAM SINE Alu 46 162 -23 281 137 18 201 chr1 30705584 30705633 -251488031 + HsTC2 DNA Tc2 3 59 -1839 1857 163 10 0 chr1 30705633 30705922 -251487742 - AluJb SINE Alu -16 296 5 281 137 18 201 chr1 30705922 30705994 -251487670 + HsTC2 DNA Tc2 59 1898 0 1852 171 3 7 chr1 30706140 30706450 -251487214 - AluJb SINE Alu -3 309 1 302 121 0 35 chr1 30706809 30706867 -251486797 + (CTA)n Simple_repeat Simple_repeat 2 57 0 418 242 112 39 chr1 30706877 30707098 -251486566 - MIR SINE MIR -26 236 4 1760 158 19 53 chr1 30709682 30710004 -251483660 - AluJo SINE Alu -1 311 1 285 75 0 0 chr1 30710504 30710544 -251483120 + (CACCC)n Simple_repeat Simple_repeat 3 42 0 1584 178 7 11 chr1 30710595 30710864 -251482800 - AluJo SINE Alu -44 268 1 2318 89 7 3 chr1 30710924 30711217 -251482447 + AluSp SINE Alu 1 294 -19 227 291 25 0 chr1 30711238 30711317 -251482347 - L3 LINE CR1 -1 1576 1496 243 312 26 0 chr1 30711770 30711847 -251481817 - MIR3 SINE MIR -17 191 113 511 285 88 73 chr1 30711850 30712110 -251481554 - L3 LINE CR1 -3 1574 1311 1097 199 5 0 chr1 30712721 30712922 -251480742 + MER105 DNA DNA 2 203 -1 1814 165 4 0 chr1 30713109 30713381 -251480283 + AluJo SINE Alu 3 275 -37 2761 39 0 0 chr1 30713498 30713806 -251479858 - AluY SINE Alu -3 308 1 27 0 0 0 chr1 30713840 30713867 -251479797 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr1 30715347 30715372 -251478292 + AT_rich Low_complexity Low_complexity 1 25 0 769 185 8 0 chr1 30715399 30715529 -251478135 + AluJb SINE Alu 165 295 -17 2034 119 61 3 chr1 30715529 30715822 -251477842 + AluJb SINE Alu 1 310 -2 2257 104 3 3 chr1 30716380 30716679 -251476985 - AluSq SINE Alu -14 299 1 255 314 29 64 chr1 30719020 30719160 -251474504 - L2 LINE L2 -1 3271 3137 651 239 23 72 chr1 30719206 30719362 -251474302 - MIR SINE MIR -6 256 115 2290 104 3 0 chr1 30719362 30719659 -251474005 + AluSx SINE Alu 1 298 -14 651 239 23 72 chr1 30719659 30719768 -251473896 - MIR SINE MIR -147 115 2 2169 98 3 32 chr1 30720130 30720309 -251473355 - AluSq SINE Alu -6 307 139 2520 74 0 3 chr1 30720309 30720619 -251473045 - AluY SINE Alu -2 309 1 2169 98 3 32 chr1 30720619 30720755 -251472909 - AluSq SINE Alu -174 139 1 1617 200 20 3 chr1 30720788 30721093 -251472571 + AluJo SINE Alu 1 310 -2 257 360 2 0 chr1 30721128 30721270 -251472394 + L2 LINE L2 2898 3040 -232 1429 145 64 60 chr1 30721364 30721646 -251472018 + AluJo SINE Alu 13 295 -17 241 253 69 58 chr1 30721651 30721738 -251471926 + L2 LINE L2 3168 3255 -17 296 283 0 33 chr1 30721853 30721945 -251471719 - L2 LINE L2 -218 3054 2966 1899 114 53 13 chr1 30722697 30722996 -251470668 + AluSx SINE Alu 1 311 -1 1976 152 0 7 chr1 30723019 30723322 -251470342 - AluSx SINE Alu -11 301 1 473 253 79 34 chr1 30723391 30723537 -251470127 - MIR SINE MIR -57 205 48 2457 72 0 0 chr1 30723537 30723842 -251469822 - AluY SINE Alu -6 305 1 473 253 79 34 chr1 30723842 30723873 -251469791 - MIR SINE MIR -214 48 20 304 301 29 64 chr1 30724099 30724229 -251469435 - L1 LINE L1 -2890 3256 3132 1688 141 0 23 chr1 30724229 30724353 -251469311 - AluSx SINE Alu -55 257 132 2101 116 0 0 chr1 30724353 30724646 -251469018 - AluSx SINE Alu -19 293 1 1688 141 0 23 chr1 30724646 30724784 -251468880 - AluSx SINE Alu -180 132 1 304 301 29 64 chr1 30724784 30724826 -251468838 - L1 LINE L1 -3014 3132 3090 2253 81 3 10 chr1 30725359 30725666 -251467998 + AluSx SINE Alu 3 307 -5 1979 139 0 7 chr1 30725974 30726276 -251467388 + AluSx SINE Alu 1 300 -12 1359 112 24 0 chr1 30726559 30726764 -251466900 - AluSg/x SINE Alu -18 292 83 21 0 0 0 chr1 30727292 30727313 -251466351 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 30730804 30730827 -251462837 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 416 266 166 12 chr1 30730934 30731103 -251462561 + L3 LINE CR1 1382 1576 -1 1706 160 23 13 chr1 30733677 30733977 -251459687 + AluJo SINE Alu 1 303 -9 677 238 74 21 chr1 30734044 30734233 -251459431 - MIR SINE MIR -51 211 13 2339 87 0 10 chr1 30734272 30734606 -251459058 - AluY SINE Alu 0 311 1 326 379 45 20 chr1 30735671 30735869 -251457795 - L3 LINE CR1 -19 1558 1356 240 35 0 0 chr1 30736327 30736356 -251457308 + (TCC)n Simple_repeat Simple_repeat 1 29 0 2404 57 0 10 chr1 30736731 30737045 -251456619 - AluY SINE Alu 0 311 1 222 171 0 0 chr1 30737327 30737368 -251456296 + C-rich Low_complexity Low_complexity 1 41 0 470 211 55 28 chr1 30738873 30738982 -251454682 - MIR SINE MIR -76 132 21 198 0 0 0 chr1 30740556 30740578 -251453086 + (A)n Simple_repeat Simple_repeat 1 22 0 342 274 24 0 chr1 30742924 30743008 -251450656 + MIR SINE MIR 34 119 -89 342 251 272 21 chr1 30743018 30743209 -251450455 - MIR SINE MIR -3 259 21 2037 145 0 0 chr1 30743867 30744171 -251449493 + AluSx SINE Alu 1 304 -8 219 275 50 12 chr1 30744396 30744476 -251449188 + MIR3 SINE MIR 109 191 -17 360 250 11 0 chr1 30744551 30744639 -251449025 - MIR SINE MIR -66 142 54 191 344 16 0 chr1 30746929 30746990 -251446674 - L2 LINE L2 -86 3186 3125 297 301 29 29 chr1 30747824 30747927 -251445737 + MIR SINE MIR 16 118 -90 * 421 236 110 33 chr1 30747907 30748089 -251445575 + L2 LINE L2 3021 3216 -97 250 329 0 14 chr1 30748113 30748186 -251445478 + MIR SINE MIR 109 180 -82 1961 79 29 29 chr1 30748375 30748655 -251445009 - AluSx SINE Alu -32 280 1 275 285 73 32 chr1 30748721 30748844 -251444820 + MIR3 SINE MIR 59 186 -22 2426 69 0 3 chr1 30749135 30749439 -251444225 + AluSx SINE Alu 1 303 -9 536 280 169 0 chr1 30749498 30749687 -251443977 + MIR SINE MIR 23 243 -19 2549 42 0 7 chr1 30749708 30750016 -251443648 + AluY SINE Alu 1 306 -5 21 0 0 0 chr1 30750923 30750944 -251442720 + AT_rich Low_complexity Low_complexity 1 21 0 563 225 23 0 chr1 30755091 30755220 -251438444 + MIR SINE MIR 54 185 -77 531 323 96 14 chr1 30755405 30755696 -251437968 + L2 LINE L2 2997 3311 -2 1916 171 0 0 chr1 30756233 30756542 -251437122 - AluJb SINE Alu -3 309 1 2030 101 6 80 chr1 30756764 30757101 -251436563 - AluSq SINE Alu 0 313 2 378 255 121 15 chr1 30757362 30757516 -251436148 - MIR SINE MIR -81 181 15 213 94 0 0 chr1 30757715 30757747 -251435917 + (TG)n Simple_repeat Simple_repeat 2 33 0 185 316 61 31 chr1 30757834 30757932 -251435732 - L2 LINE L2 -3 3269 3169 254 210 200 50 chr1 30757937 30758037 -251435627 - L2 LINE L2 -7 3306 3192 2225 86 0 3 chr1 30758058 30758349 -251435315 - AluSq SINE Alu -23 290 1 209 294 132 0 chr1 30758418 30758486 -251435178 - L2 LINE L2 -99 3173 3097 2133 109 7 3 chr1 30758508 30758810 -251434854 + AluSq SINE Alu 1 303 -10 387 292 305 14 chr1 30758814 30759181 -251434483 - L2 LINE L2 -16 3297 2824 225 370 14 0 chr1 30759202 30759275 -251434389 - L2 LINE L2 -99 3173 3100 1243 106 0 6 chr1 30759291 30759461 -251434203 + AluSq SINE Alu 1 169 -144 502 231 125 19 chr1 30759464 30759624 -251434040 - L2 LINE L2 -550 2764 2588 252 284 43 74 chr1 30759682 30759844 -251433820 - L2 LINE L2 -205 3067 2911 835 107 0 94 chr1 30759965 30760051 -251433613 + AluSq/x SINE Alu 1 69 -244 2223 89 3 0 chr1 30760051 30760344 -251433320 + AluSp SINE Alu 1 294 -19 835 107 0 94 chr1 30760344 30760406 -251433258 + AluSq/x SINE Alu 69 135 -178 2071 101 0 27 chr1 30760406 30760704 -251432960 + AluY SINE Alu 1 290 -21 42 0 0 0 chr1 30760829 30760871 -251432793 + AT_rich Low_complexity Low_complexity 1 42 0 3096 113 8 15 chr1 30760871 30761348 -251432316 - L1PA6 LINE L1 -1 6153 5680 599 70 2 0 chr1 30761348 30761441 -251432223 - L1PA5 LINE L1 -80 6074 5981 238 282 48 40 chr1 30761605 30761729 -251431935 + MIR SINE MIR 138 262 0 238 125 0 54 chr1 30761804 30761860 -251431804 - L1MA1 LINE L1 -4 6298 6246 180 0 0 0 chr1 30761862 30761882 -251431782 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 717 155 0 0 chr1 30761882 30761985 -251431679 - FRAM SINE Alu -29 147 45 180 50 25 50 chr1 30762114 30762154 -251431510 + (GGAGA)n Simple_repeat Simple_repeat 5 43 0 432 309 0 36 chr1 30762459 30762624 -251431040 + MIR SINE MIR 24 182 -80 214 225 11 45 chr1 30762748 30762837 -251430827 + (CCCCG)n Simple_repeat Simple_repeat 5 90 0 211 219 207 0 chr1 30763970 30764052 -251429612 + MIR SINE MIR 47 145 -63 192 241 0 0 chr1 30764137 30764195 -251429469 - L2 LINE L2 -221 3051 2994 400 319 53 0 chr1 30764469 30764657 -251429007 + MIR SINE MIR 59 256 -6 192 307 40 10 chr1 30765691 30765792 -251427872 - MIR3 SINE MIR -50 158 55 2215 99 3 0 chr1 30767138 30767432 -251426232 + AluSq SINE Alu 1 295 -18 309 213 76 16 chr1 30767458 30767568 -251426096 - MIR SINE MIR -55 153 41 720 167 48 8 chr1 30767568 30767694 -251425970 + FLAM_C SINE Alu 1 131 -2 24 0 0 0 chr1 30767695 30767719 -251425945 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 30767981 30768012 -251425652 + AT_rich Low_complexity Low_complexity 1 31 0 699 133 0 0 chr1 30768018 30768123 -251425541 - AluSg/x SINE Alu 0 312 208 1778 121 30 40 chr1 30768469 30768767 -251424897 + AluJb SINE Alu 1 295 -17 1776 145 13 20 chr1 30768783 30768907 -251424757 + AluJo SINE Alu 12 135 -177 2151 121 0 0 chr1 30768907 30769212 -251424452 + AluSx SINE Alu 1 305 -7 1776 145 13 20 chr1 30769212 30769390 -251424274 + AluJo SINE Alu 135 312 0 258 271 53 65 chr1 30769396 30769566 -251424098 - L1ME4a LINE L1 -90 6031 5864 276 345 63 6 chr1 30769578 30769752 -251423912 - L1ME4a LINE L1 -327 5794 5611 313 153 17 0 chr1 30969946 30970005 -251223659 + AluSp/q SINE Alu 242 301 -2 1585 203 3 10 chr1 30970030 30970325 -251223339 + AluJb SINE Alu 3 295 -17 209 332 113 28 chr1 30970348 30970631 -251223033 + L2 LINE L2 2171 2477 -837 1109 161 31 21 chr1 30970676 30970869 -251222795 - AluJb SINE Alu -2 310 116 2198 88 7 10 chr1 30970874 30971170 -251222494 + AluSq SINE Alu 1 295 -18 2025 134 0 3 chr1 30971174 30971479 -251222185 + AluY SINE Alu 4 307 -4 2434 92 10 0 chr1 30971485 30971788 -251221876 + AluSq SINE Alu 1 306 -7 862 141 0 30 chr1 30972009 30972144 -251221520 + FLAM_C SINE Alu 2 132 -1 1534 145 0 5 chr1 30972181 30972402 -251221262 + AluJb SINE Alu 86 305 -7 379 129 106 35 chr1 30972411 30972496 -251221168 + MER5B DNA MER1_type 88 178 0 204 225 0 0 chr1 30972723 30972763 -251220901 + CT-rich Low_complexity Low_complexity 2 41 0 21 0 0 0 chr1 30972814 30972835 -251220829 + AT_rich Low_complexity Low_complexity 1 21 0 2651 68 0 0 chr1 30973076 30973387 -251220277 + AluSq SINE Alu 1 311 -2 1890 128 3 47 chr1 30973932 30974228 -251219436 + AluSx SINE Alu 11 293 -19 739 111 222 0 chr1 30974228 30974345 -251219319 + AluSg/x SINE Alu 132 274 -36 2509 85 0 0 chr1 30974362 30974667 -251218997 + AluSx SINE Alu 1 305 -7 191 282 58 87 chr1 30974765 30974868 -251218796 - L2 LINE L2 -203 3069 2970 397 277 8 17 chr1 30975077 30975196 -251218468 + MIR SINE MIR 66 183 -79 1901 99 33 0 chr1 30975253 30975495 -251218169 + AluSc SINE Alu 1 250 -59 5212 172 16 1 chr1 30975572 30976486 -251217178 + Harlequin LTR ERV1 4616 5543 -1353 228 67 0 0 chr1 30976591 30976621 -251217043 + (C)n Simple_repeat Simple_repeat 1 30 0 373 273 55 60 chr1 30976661 30976844 -251216820 - LTR2 LTR ERV1 -267 182 1 355 250 194 25 chr1 30976872 30977032 -251216632 - MIR SINE MIR -56 206 20 1817 161 0 18 chr1 30977462 30977776 -251215888 + AluJb SINE Alu 1 309 0 2408 94 0 3 chr1 30978076 30978384 -251215280 + AluSx SINE Alu 1 307 -5 1611 165 4 14 chr1 30978707 30978986 -251214678 - AluJb SINE Alu -17 295 20 2031 138 38 0 chr1 30980564 30980854 -251212810 + AluSx SINE Alu 1 301 -11 921 119 6 50 chr1 30981475 30981634 -251212030 + AluSq/x SINE Alu 1 152 -161 192 143 0 0 chr1 30981917 30981945 -251211719 - MIR SINE MIR -20 242 215 2365 85 0 3 chr1 30982191 30982484 -251211180 - AluSg SINE Alu -18 292 1 837 221 25 0 chr1 30982491 30982654 -251211010 - AluSp SINE Alu -16 297 131 1470 64 0 0 chr1 30982660 30982832 -251210832 - AluY SINE Alu -13 298 127 2267 91 7 0 chr1 30982857 30983144 -251210520 - AluSx SINE Alu -23 289 1 189 0 0 0 chr1 30983144 30983165 -251210499 + (T)n Simple_repeat Simple_repeat 1 21 0 369 182 68 0 chr1 30983166 30983254 -251210410 - MER50 LTR ERV1 -142 592 499 2452 72 0 34 chr1 30983280 30983601 -251210063 - AluY SINE Alu -1 310 1 855 115 0 31 chr1 30983613 30983743 -251209921 - FLAM_C SINE Alu -17 126 1 1028 172 0 21 chr1 30983744 30983930 -251209734 - AluJo SINE Alu -11 301 120 1211 181 43 36 chr1 30984168 30984444 -251209220 + AluJo SINE Alu 32 309 -3 318 262 103 62 chr1 30984935 30985080 -251208584 + AluJo SINE Alu 1 151 -151 1975 191 62 9 chr1 30985186 30985636 -251208028 - L1ME LINE L1 -375 5791 5318 714 200 0 0 chr1 30985651 30985766 -251207898 - AluJo SINE Alu -195 117 3 2060 117 7 20 chr1 30985774 30986074 -251207590 - AluSx SINE Alu -16 296 1 948 212 55 11 chr1 30986164 30986247 -251207417 - L1ME LINE L1 -863 5283 5205 2259 106 0 7 chr1 30986247 30986550 -251207114 - AluSg1 SINE Alu -8 301 1 948 212 55 11 chr1 30986550 30986740 -251206924 - L1ME LINE L1 -941 5205 4998 2282 102 0 0 chr1 30986749 30987043 -251206621 - AluSq SINE Alu -17 296 3 231 348 108 19 chr1 30987046 30987204 -251206460 + L2 LINE L2 2586 2757 -557 248 100 0 20 chr1 30987218 30987268 -251206396 + (TG)n Simple_repeat Simple_repeat 1 49 0 748 171 0 57 chr1 30987517 30987657 -251206007 + AluJo/FLAM SINE Alu 1 132 -170 2255 124 7 0 chr1 30987660 30987966 -251205698 + AluSx SINE Alu 1 308 -4 231 296 25 0 chr1 30987996 30988077 -251205587 + MIR SINE MIR 110 192 -70 753 281 43 11 chr1 30988565 30988846 -251204818 + LTR16A LTR ERVL 155 444 -6 1055 158 0 0 chr1 30988991 30989149 -251204515 + AluSx SINE Alu 2 159 -153 480 119 0 0 chr1 30989249 30989316 -251204348 - AluS SINE Alu -245 68 2 1372 221 20 7 chr1 30989322 30989621 -251204043 - AluJo SINE Alu -9 303 1 1795 168 3 20 chr1 30989629 30989927 -251203737 - AluJo SINE Alu -19 293 1 2261 114 3 0 chr1 30989957 30990254 -251203410 + AluSx SINE Alu 1 298 -14 874 207 124 0 chr1 30990275 30990468 -251203196 - MER20 DNA MER1_type -1 218 2 1556 179 58 3 chr1 30990493 30990784 -251202880 + AluJo SINE Alu 1 307 -5 2207 124 0 0 chr1 30990888 30991186 -251202478 - AluSx SINE Alu -14 298 1 222 185 93 0 chr1 30991488 30991542 -251202122 + L2 LINE L2 3206 3264 -8 544 199 48 34 chr1 30992106 30992252 -251201412 - L2 LINE L2 -8 3305 3158 2415 85 0 25 chr1 30992280 30992597 -251201067 - AluY SINE Alu -2 309 1 709 94 0 0 chr1 30992766 30992862 -251200802 + AluSp/q SINE Alu 155 250 -63 1366 135 9 22 chr1 30992862 30993091 -251200573 + AluSg/x SINE Alu 83 308 -2 2357 102 0 7 chr1 30993116 30993419 -251200245 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 30993630 30993772 -251199892 + AluYb8 SINE Alu 1 155 -163 2190 130 0 0 chr1 30993772 30994073 -251199591 + AluSg SINE Alu 1 301 -9 1649 131 20 116 chr1 30994073 30994274 -251199390 + AluYb8 SINE Alu 155 311 -7 974 188 0 18 chr1 30994275 30994445 -251199219 + AluJb SINE Alu 133 299 -13 333 298 37 43 chr1 30995727 30995915 -251197749 - L2 LINE L2 -161 3111 2925 183 299 26 26 chr1 30996041 30996118 -251197546 - L2 LINE L2 -213 3059 2983 250 300 36 45 chr1 30996142 30996252 -251197412 + MIR SINE MIR 41 149 -59 2241 93 10 30 chr1 30996270 30996572 -251197092 - AluSq SINE Alu -17 296 1 225 313 99 42 chr1 30996599 30996791 -251196873 - L2 LINE L2 -1216 2098 1896 1477 122 15 0 chr1 31097392 31097597 -251096067 + AluSx SINE Alu 61 268 -44 262 329 37 0 chr1 31097837 31097919 -251095745 + L2 LINE L2 3139 3223 -49 2503 68 0 0 chr1 31098160 31098468 -251095196 + AluY SINE Alu 1 308 -3 218 325 167 8 chr1 31098550 31098676 -251094988 - L2 LINE L2 -182 3090 2945 1130 108 25 0 chr1 31098780 31098970 -251094694 - AluSg/x SINE Alu 0 312 119 2005 121 10 13 chr1 31099094 31099400 -251094264 + AluSx SINE Alu 4 308 -4 222 330 130 9 chr1 31099820 31099935 -251093729 + L3 LINE CR1 1431 1559 -18 955 108 88 159 chr1 31099981 31100140 -251093524 + MER46B DNA MER2_type 2 171 -2560 2234 82 7 0 chr1 31100140 31100446 -251093218 + AluY SINE Alu 1 308 0 955 108 88 159 chr1 31100446 31100480 -251093184 + MER46B DNA MER2_type 171 46 -2685 1867 138 50 7 chr1 31100480 31100763 -251092901 + AluSg SINE Alu 1 295 -15 955 108 88 159 chr1 31100763 31100863 -251092801 + MER46B DNA MER2_type 45 151 -85 2210 132 0 7 chr1 31100972 31101282 -251092382 - AluSx SINE Alu -4 308 1 2340 93 7 0 chr1 31101293 31101594 -251092070 - AluY SINE Alu -5 306 4 1800 282 30 9 chr1 31101633 31102172 -251091492 - L2 LINE L2 -602 2712 2163 2114 143 0 0 chr1 31102216 31102509 -251091155 - AluJb SINE Alu -14 298 6 2224 89 0 0 chr1 31102509 31102779 -251090885 - AluY SINE Alu -40 271 1 1340 114 0 30 chr1 31102782 31102984 -251090680 - AluSq SINE Alu -18 295 100 2251 106 0 7 chr1 31103085 31103378 -251090286 - AluSx SINE Alu -21 291 1 324 0 0 0 chr1 31103592 31103628 -251090036 + (TG)n Simple_repeat Simple_repeat 1 36 0 660 185 68 48 chr1 31103629 31103775 -251089889 - FRAM SINE Alu -30 146 1 1672 170 3 36 chr1 31103785 31103948 -251089716 - AluJo SINE Alu -16 296 146 2229 125 3 0 chr1 31103948 31104244 -251089420 - AluSx SINE Alu -15 297 1 1672 170 3 36 chr1 31104244 31104386 -251089278 - AluJo SINE Alu -166 146 1 229 156 111 0 chr1 31104451 31104496 -251089168 - L2 LINE L2 0 3313 3264 1313 176 5 5 chr1 31104614 31104835 -251088829 + AluJb SINE Alu 82 302 -10 404 153 0 0 chr1 31104865 31104924 -251088740 + AluS SINE Alu 2 60 -249 1987 110 27 0 chr1 31105024 31105287 -251088377 - AluSc SINE Alu -39 270 1 794 184 102 0 chr1 31105290 31105437 -251088227 - FRAM SINE Alu -17 159 1 2204 125 0 16 chr1 31105709 31106022 -251087642 - AluJb SINE Alu -4 308 1 2040 141 7 0 chr1 31106201 31106500 -251087164 + AluSx SINE Alu 2 302 -10 2391 81 0 14 chr1 31107031 31107326 -251086338 + AluSg SINE Alu 2 292 -18 1475 152 65 96 chr1 31107438 31107760 -251085904 + AluSx SINE Alu 1 312 0 526 269 72 76 chr1 31107760 31107986 -251085678 - L2 LINE L2 -93 3220 2995 2005 112 14 27 chr1 31107986 31108282 -251085382 + AluSq SINE Alu 1 292 -21 2122 101 40 7 chr1 31108284 31108580 -251085084 + AluSg SINE Alu 1 306 -4 526 269 72 76 chr1 31108580 31108614 -251085050 - L2 LINE L2 -319 2994 2958 1391 161 146 26 chr1 31108644 31108911 -251084753 + AluYa8 SINE Alu 1 299 -11 267 268 0 0 chr1 31109061 31109117 -251084547 - Charlie8 DNA MER1_type -2215 202 147 2361 99 6 16 chr1 31109128 31109441 -251084223 - AluSg SINE Alu 0 310 1 1932 158 3 7 chr1 31109442 31109740 -251083924 - AluJb SINE Alu -15 297 1 241 203 145 0 chr1 31109741 31109810 -251083854 + L1ME LINE L1 5690 5768 -402 2751 36 0 0 chr1 31109831 31110140 -251083524 - AluY SINE Alu -2 309 1 424 48 16 0 chr1 31110249 31110312 -251083352 - LTR9B LTR ERV1 -135 509 446 2311 84 7 0 chr1 31110316 31110639 -251083025 - AluY SINE Alu 0 311 4 1441 167 159 0 chr1 31110661 31110912 -251082752 - AluSx SINE Alu -21 291 1 1864 101 97 0 chr1 31110921 31111217 -251082447 - AluSc SINE Alu 0 321 1 2104 129 3 0 chr1 31111217 31111511 -251082153 - AluSq SINE Alu -18 295 1 2228 92 0 20 chr1 31111836 31112141 -251081523 - AluSp SINE Alu -14 299 1 781 129 0 40 chr1 31112142 31112266 -251081398 + FLAM_C SINE Alu 11 129 -14 227 321 78 117 chr1 31112408 31112488 -251081176 - L2 LINE L2 -8 3264 3182 2189 124 0 3 chr1 31112488 31112786 -251080878 + AluSc SINE Alu 1 297 -12 227 321 78 117 chr1 31112786 31112804 -251080860 - L2 LINE L2 -90 3182 3165 2073 120 33 0 chr1 31112804 31113101 -251080563 + AluSp SINE Alu 1 306 0 227 321 78 117 chr1 31113101 31113308 -251080356 - L2 LINE L2 -107 3165 2969 741 123 0 0 chr1 31113308 31113414 -251080250 + AluSg/x SINE Alu 187 292 -17 2383 88 0 3 chr1 31113740 31114037 -251079627 - AluSp SINE Alu -17 296 1 184 281 22 45 chr1 31114373 31114462 -251079202 + MIR SINE MIR 61 147 -115 2000 105 10 64 chr1 31114523 31114836 -251078828 - AluSx SINE Alu -16 296 1 1795 77 0 5 chr1 31114929 31115151 -251078513 + AluSg/x SINE Alu 82 302 -10 240 274 27 14 chr1 31115212 31115285 -251078379 - MIR SINE MIR -115 147 74 2447 71 7 0 chr1 31115361 31115670 -251077994 + AluY SINE Alu 1 311 0 2035 146 0 3 chr1 31115746 31116040 -251077624 + AluJb SINE Alu 1 293 -19 229 91 0 0 chr1 31116564 31116597 -251077067 - L2 LINE L2 -165 3148 3116 807 200 100 42 chr1 31116708 31116968 -251076696 + L2 LINE L2 970 1244 -2070 1207 52 13 19 chr1 31117009 31117164 -251076500 - AluY SINE Alu -16 295 142 180 196 155 93 chr1 31117413 31117491 -251076173 - MIR SINE MIR -79 183 96 2143 123 7 7 chr1 31117491 31117792 -251075872 + AluSx SINE Alu 3 303 -9 180 196 155 93 chr1 31117792 31117810 -251075854 - MIR SINE MIR -166 96 81 744 210 34 39 chr1 31117986 31118191 -251075473 + MER63A DNA MER1_type 4 207 -3 2218 98 9 19 chr1 31118365 31118680 -251074984 - AluSp SINE Alu -1 312 1 1124 188 0 0 chr1 31119151 31119327 -251074337 - FRAM SINE Alu -8 168 1 332 141 0 0 chr1 31119347 31119425 -251074239 - Charlie5 DNA MER1_type -121 2491 2414 2620 57 0 0 chr1 31119433 31119733 -251073931 + AluY SINE Alu 1 300 -11 1934 70 0 4 chr1 31119743 31120002 -251073662 + L1PA8A LINE L1 5845 6102 -29 180 0 0 0 chr1 31120010 31120030 -251073634 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1342 152 0 0 chr1 31120359 31120557 -251073107 - AluSg/x SINE Alu -10 302 105 412 159 0 14 chr1 31120557 31120626 -251073038 + AluS SINE Alu 225 292 -17 454 100 57 0 chr1 31120749 31120819 -251072845 - HERVL LTR ERVL -3940 1714 1641 680 188 7 51 chr1 31120820 31120958 -251072706 + FLAM_C SINE Alu 2 133 0 1029 110 7 14 chr1 31120963 31121108 -251072556 + AluSq/x SINE Alu 1 144 -169 2273 122 0 3 chr1 31121108 31121411 -251072253 + AluSq SINE Alu 1 302 -11 1826 173 0 20 chr1 31121414 31121552 -251072112 + AluSx SINE Alu 1 140 -172 1932 141 48 0 chr1 31121552 31121843 -251071821 + AluSx SINE Alu 1 305 -7 1826 173 0 20 chr1 31121843 31122010 -251071654 + AluSx SINE Alu 140 300 -12 2420 141 0 18 chr1 31122029 31122413 -251071251 - HERVL LTR ERVL -4074 1580 1204 1008 163 28 6 chr1 31122420 31122598 -251071066 + AluJb SINE Alu 116 297 -15 1801 80 13 4 chr1 31122598 31122824 -251070840 + AluSg SINE Alu 1 228 -82 1122 170 0 49 chr1 31122824 31123048 -251070616 + AluY SINE Alu 94 306 -5 2106 119 0 3 chr1 31123057 31123370 -251070294 + AluSq SINE Alu 1 312 0 1612 185 3 31 chr1 31123371 31123727 -251069937 + L1MB4 LINE L1 5605 5950 -233 1921 142 0 43 chr1 31123728 31124031 -251069633 + AluSx SINE Alu 1 290 -22 289 83 0 0 chr1 31124032 31124080 -251069584 + L1MB4 LINE L1 6133 6180 0 218 244 39 64 chr1 31124207 31124285 -251069379 + MIR SINE MIR 187 262 0 265 230 20 80 chr1 31124285 31124385 -251069279 + LTR44 LTR ERV1 1 94 -425 331 102 0 0 chr1 31124486 31124535 -251069129 + Alu SINE Alu 251 299 -3 410 286 131 99 chr1 31125011 31125133 -251068531 + L2 LINE L2 2207 2324 -990 2484 55 7 0 chr1 31125133 31125424 -251068240 - AluSp SINE Alu -20 293 1 410 286 131 99 chr1 31125424 31125919 -251067745 + L2 LINE L2 2324 2844 -470 486 0 0 0 chr1 31126038 31126092 -251067572 + (TG)n Simple_repeat Simple_repeat 1 54 0 1831 170 3 3 chr1 31126092 31126368 -251067296 - AluJo SINE Alu -28 284 6 365 268 91 72 chr1 31126453 31126662 -251067002 + L2 LINE L2 3099 3311 -2 2250 110 28 0 chr1 31126779 31127070 -251066594 - AluSg SINE Alu -11 299 1 2016 161 0 0 chr1 31127070 31127368 -251066296 - AluJo SINE Alu -14 298 1 2394 103 0 0 chr1 31127446 31127748 -251065916 - AluSg SINE Alu -8 302 1 2482 86 0 0 chr1 31128284 31128588 -251065076 - AluSx SINE Alu -8 304 1 474 254 70 0 chr1 31129275 31129389 -251064275 - L2 LINE L2 -1 3271 3150 1504 214 10 14 chr1 31129417 31129712 -251063952 + AluJo SINE Alu 1 294 -18 475 131 61 0 chr1 31129718 31129817 -251063847 + Charlie4 DNA MER1_type 1824 1928 -33 180 324 56 14 chr1 31129962 31130033 -251063631 - L2 LINE L2 -216 3056 2983 2471 68 10 0 chr1 31131020 31131314 -251062350 + AluSp SINE Alu 1 297 -16 1422 81 0 0 chr1 31131882 31132056 -251061608 + AluY SINE Alu 123 296 -15 975 26 0 0 chr1 31132261 31132377 -251061287 + L1PA5 LINE L1 6038 6153 -1 2343 57 10 29 chr1 31132417 31132769 -251060895 + AluY SINE Alu 1 311 0 2317 88 20 3 chr1 31132808 31133105 -251060559 - AluSq SINE Alu -11 302 1 197 33 33 0 chr1 31133160 31133190 -251060474 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1552 129 7 100 chr1 31133195 31133504 -251060160 - AluJb SINE Alu -29 283 4 747 172 112 18 chr1 31133508 31133677 -251059987 + AluJo SINE Alu 121 305 -7 1952 66 45 63 chr1 31134168 31134312 -251059352 + AluSc SINE Alu 2 147 -162 2279 92 0 0 chr1 31134312 31134619 -251059045 + AluSq SINE Alu 1 307 0 1952 66 45 63 chr1 31134619 31134786 -251058878 + AluSc SINE Alu 147 309 0 22 0 0 0 chr1 31135759 31135781 -251057883 + GC_rich Low_complexity Low_complexity 1 22 0 43 116 0 0 chr1 31135816 31136015 -251057649 + GC_rich Low_complexity Low_complexity 1 199 0 20577 86 4 16 chr1 31136122 31136135 -251057529 + HERVL LTR ERVL 1717 1729 -3925 2361 97 3 0 chr1 31136135 31136433 -251057231 + AluSp SINE Alu 1 299 -14 20577 86 4 16 chr1 31136433 31136978 -251056686 + HERVL LTR ERVL 1729 2279 -3375 2215 123 0 3 chr1 31136978 31137279 -251056385 + AluSq SINE Alu 1 300 -13 20577 86 4 16 chr1 31137279 31139047 -251054617 + HERVL LTR ERVL 2279 4007 -1647 2364 93 0 7 chr1 31139047 31139348 -251054316 - AluSc SINE Alu -10 299 1 20577 86 4 16 chr1 31139348 31139878 -251053786 + HERVL LTR ERVL 4007 4542 -1112 21 0 0 0 chr1 31139983 31140004 -251053660 + AT_rich Low_complexity Low_complexity 1 21 0 213 65 0 0 chr1 31140546 31140577 -251053087 + (T)n Simple_repeat Simple_repeat 1 31 0 212 300 57 0 chr1 31140908 31140996 -251052668 + MIR SINE MIR 32 123 -85 23 0 0 0 chr1 31141023 31141046 -251052618 + AT_rich Low_complexity Low_complexity 1 23 0 2299 112 3 0 chr1 31141051 31141354 -251052310 + AluSq SINE Alu 1 304 -9 2291 110 0 23 chr1 31141363 31141672 -251051992 + AluSx SINE Alu 3 304 -8 322 364 0 0 chr1 31141681 31141791 -251051873 + MIR SINE MIR 151 260 -2 423 0 0 0 chr1 31142157 31142204 -251051460 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 821 135 0 0 chr1 31142252 31142363 -251051301 + AluJb SINE Alu 2 112 -200 1137 173 48 10 chr1 31142365 31142573 -251051091 - AluJo SINE Alu -12 300 85 2214 122 3 0 chr1 31142602 31142897 -251050767 + AluSx SINE Alu 1 296 -16 2311 101 3 3 chr1 31143572 31143869 -251049795 - AluSg SINE Alu -13 297 1 765 105 0 0 chr1 31143869 31143974 -251049690 - AluSg1 SINE Alu -12 298 194 1056 70 0 8 chr1 31143974 31144103 -251049561 - AluSg1 SINE Alu -181 128 1 27 29 0 0 chr1 31144143 31144177 -251049487 + AT_rich Low_complexity Low_complexity 1 34 0 701 259 116 58 chr1 31144177 31144505 -251049159 + L1ME4a LINE L1 5625 5971 -150 2375 89 0 16 chr1 31144543 31144846 -251048818 - AluSc SINE Alu -11 298 1 340 222 231 0 chr1 31144889 31144997 -251048667 - FRAM SINE Alu -33 133 1 1174 404 3 27 chr1 31145027 31145324 -251048340 - AluSx SINE Alu -8 294 5 1650 181 4 0 chr1 31145324 31145594 -251048070 - AluSq SINE Alu -42 271 1 363 44 0 0 chr1 31146387 31146432 -251047232 + (TA)n Simple_repeat Simple_repeat 1 45 0 2351 106 3 0 chr1 31146432 31146735 -251046929 - AluSp SINE Alu -9 304 1 554 130 0 0 chr1 31147008 31147085 -251046579 + AluSc SINE Alu 2 78 -231 2406 75 0 3 chr1 31147085 31147379 -251046285 + AluY SINE Alu 1 293 -18 1808 99 0 37 chr1 31147379 31147621 -251046043 + AluSc SINE Alu 63 296 -13 2484 83 0 0 chr1 31147623 31147923 -251045741 + AluY SINE Alu 3 302 -9 2328 90 10 0 chr1 31147941 31148231 -251045433 + AluSx SINE Alu 13 305 -7 1699 159 66 10 chr1 31148624 31148913 -251044751 + AluJb SINE Alu 1 305 -7 2166 117 0 42 chr1 31148919 31149062 -251044602 + AluSg SINE Alu 1 148 -162 2548 66 0 7 chr1 31149062 31149367 -251044297 + AluY SINE Alu 1 303 -8 2166 117 0 42 chr1 31149367 31149532 -251044132 + AluSg SINE Alu 148 296 -14 1203 206 0 52 chr1 31149701 31149953 -251043711 - MER8 DNA MER2_type 0 239 1 2446 50 10 13 chr1 31150100 31150399 -251043265 - AluY SINE Alu -13 298 1 1796 189 31 0 chr1 31150405 31150691 -251042973 - AluJo SINE Alu -17 295 1 1512 60 0 22 chr1 31151601 31151784 -251041880 + AluY SINE Alu 1 179 -132 637 88 0 0 chr1 31151784 31151875 -251041789 + AluY SINE Alu 218 308 -3 270 267 126 26 chr1 31151884 31151981 -251041683 - MIR SINE MIR -93 115 13 315 280 40 72 chr1 31152128 31152211 -251041453 - L2 LINE L2 0 3272 3193 2355 103 6 3 chr1 31152211 31152523 -251041141 + AluSp SINE Alu 1 313 0 315 280 40 72 chr1 31152523 31152564 -251041100 - L2 LINE L2 -79 3193 3152 39 60 0 0 chr1 31152675 31152742 -251040922 + AT_rich Low_complexity Low_complexity 1 67 0 464 212 40 13 chr1 31153221 31153351 -251040313 - MIR SINE MIR -62 146 62 228 146 0 49 chr1 31153397 31153438 -251040226 + AluY SINE Alu 87 125 -177 2408 80 0 7 chr1 31153440 31153739 -251039925 - AluSx SINE Alu -15 297 1 898 165 0 37 chr1 31153739 31153903 -251039761 + AluY SINE Alu 115 272 -39 329 312 147 23 chr1 31154030 31154248 -251039416 - MIR SINE MIR 0 262 18 1088 121 4 143 chr1 31154297 31154457 -251039207 - AluSg/x SINE Alu -23 289 169 189 0 0 0 chr1 31154457 31154478 -251039186 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1088 121 4 143 chr1 31154478 31154548 -251039116 - AluSg/x SINE Alu -143 169 91 2258 114 0 0 chr1 31154578 31154877 -251038787 + AluSg SINE Alu 1 299 -11 895 100 0 8 chr1 31154896 31155016 -251038648 - FLAM_C SINE Alu -24 119 1 2063 107 0 7 chr1 31155740 31156021 -251037643 + AluSc SINE Alu 24 302 -7 1995 160 6 10 chr1 31156154 31156466 -251037198 - AluJb SINE Alu -1 311 1 3630 177 33 83 chr1 31156475 31157251 -251036413 - MER21B LTR ERV1 -22 841 27 2262 92 0 57 chr1 31157251 31157566 -251036098 + AluSc SINE Alu 2 298 -11 3630 177 33 83 chr1 31157566 31157582 -251036082 - MER21B LTR ERV1 -836 27 95 2515 49 3 23 chr1 31157582 31157887 -251035777 + AluY SINE Alu 1 299 -12 3630 177 33 83 chr1 31157887 31157979 -251035685 - MER21B LTR ERV1 -767 96 1 945 223 0 0 chr1 31158475 31158650 -251035014 + FAM SINE Alu 1 175 0 240 288 110 14 chr1 31158665 31158738 -251034926 - MIR SINE MIR -107 101 22 2472 55 7 19 chr1 31160028 31160335 -251033329 + AluSq SINE Alu 1 303 -10 2409 79 3 23 chr1 31160521 31160826 -251032838 + AluSx SINE Alu 1 299 -13 1489 65 0 0 chr1 31161551 31161720 -251031944 - AluSq SINE Alu -144 169 1 2204 116 3 0 chr1 31161774 31162068 -251031596 - AluSx SINE Alu -17 295 1 283 275 53 76 chr1 31162353 31162484 -251031180 - L2 LINE L2 -229 3043 2916 1695 156 57 11 chr1 31162507 31162789 -251030875 + AluJo SINE Alu 11 305 -7 2193 110 0 20 chr1 31162810 31163102 -251030562 - AluSg SINE Alu -24 286 1 204 327 109 40 chr1 31163543 31163644 -251030020 - MIR3 SINE MIR -7 201 94 552 268 78 123 chr1 31163679 31163822 -251029842 + L2 LINE L2 2145 2293 -1021 1942 145 3 39 chr1 31163822 31163997 -251029667 - AluJo SINE Alu -13 299 138 198 0 0 0 chr1 31163997 31164019 -251029645 + (TA)n Simple_repeat Simple_repeat 2 23 0 1942 145 3 39 chr1 31164019 31164153 -251029511 - AluJo SINE Alu -174 138 1 552 268 78 123 chr1 31164153 31164179 -251029485 + L2 LINE L2 2293 2319 -995 2524 63 3 0 chr1 31164179 31164481 -251029183 - AluY SINE Alu -8 303 1 552 268 78 123 chr1 31164481 31164730 -251028934 + L2 LINE L2 2319 2578 -736 2420 97 0 0 chr1 31164730 31165038 -251028626 - AluSc SINE Alu -1 308 1 679 200 15 8 chr1 31165040 31165170 -251028494 - AluJo/FLAM SINE Alu -169 133 3 552 268 78 123 chr1 31165170 31165365 -251028299 + L2 LINE L2 2579 2735 -579 2253 84 38 0 chr1 31165399 31165686 -251027978 - AluY SINE Alu -13 298 1 1141 160 0 0 chr1 31165688 31165857 -251027807 - AluSg/x SINE Alu -15 295 127 427 268 97 40 chr1 31165867 31165984 -251027680 + L2 LINE L2 2819 2928 -344 2344 92 0 6 chr1 31165984 31166298 -251027366 - AluSq SINE Alu -1 312 1 427 268 97 40 chr1 31166298 31166408 -251027256 + L2 LINE L2 2928 3059 -213 203 119 262 0 chr1 31166539 31166581 -251027083 + L2 LINE L2 3255 3307 -6 25 0 0 28 chr1 31166980 31166997 -251026667 + AT_rich Low_complexity Low_complexity 1 17 -18 2149 123 0 3 chr1 31166997 31167305 -251026359 - AluSx SINE Alu -5 307 1 25 0 0 28 chr1 31167305 31167323 -251026341 + AT_rich Low_complexity Low_complexity 17 35 0 331 284 75 45 chr1 31167324 31167458 -251026206 - MIR SINE MIR -75 187 50 2168 79 7 7 chr1 31167590 31167896 -251025768 - AluSc SINE Alu 0 309 4 321 316 111 12 chr1 31168396 31168567 -251025097 + MIR SINE MIR 69 256 -6 22 0 0 0 chr1 31169267 31169289 -251024375 + GC_rich Low_complexity Low_complexity 1 22 0 2083 118 26 7 chr1 31170865 31171171 -251022493 - AluSx SINE Alu 0 312 1 638 192 0 33 chr1 31171525 31171645 -251022019 + FAM SINE Alu 49 164 -21 1746 118 66 21 chr1 31171744 31172033 -251021631 - AluSq SINE Alu -11 302 1 2212 96 0 3 chr1 31173124 31173436 -251020228 - AluY SINE Alu 0 311 1 1048 133 6 0 chr1 31173437 31173595 -251020069 - AluSg/x SINE Alu -18 294 136 1717 140 24 3 chr1 31173695 31173987 -251019677 - AluSx SINE Alu -14 298 1 921 82 0 22 chr1 31174441 31174575 -251019089 - AluSq SINE Alu -13 300 170 827 107 0 0 chr1 31174575 31174687 -251018977 - AluSq SINE Alu -200 113 2 1533 156 32 3 chr1 31177076 31177358 -251016306 - AluJb SINE Alu -22 290 1 1784 103 65 0 chr1 31177845 31178106 -251015558 + AluSp SINE Alu 1 278 -35 1819 156 3 0 chr1 31178151 31178446 -251015218 + AluJo SINE Alu 1 296 -16 1663 128 0 67 chr1 31178850 31179162 -251014502 + AluSx SINE Alu 1 291 -21 2204 79 10 3 chr1 31179195 31179486 -251014178 + AluSp SINE Alu 1 293 -20 1334 82 0 0 chr1 31179684 31179855 -251013809 + AluSg SINE Alu 2 172 -138 1708 101 4 8 chr1 31179957 31180205 -251013459 - AluY SINE Alu -64 247 1 1687 147 7 23 chr1 31180209 31180516 -251013148 - AluJb SINE Alu 0 312 11 1745 78 109 4 chr1 31180543 31180799 -251012865 - AluSc SINE Alu -26 283 1 1034 83 0 0 chr1 31180799 31180932 -251012732 - AluSc SINE Alu -176 133 1 1272 171 0 0 chr1 31180969 31181180 -251012484 - AluJb SINE Alu -99 213 3 1942 121 24 10 chr1 31181191 31181488 -251012176 - AluSx SINE Alu -11 301 1 1588 139 0 0 chr1 31181499 31181743 -251011921 - AluSq SINE Alu -17 296 53 519 298 140 45 chr1 31181969 31182203 -251011461 + L2 LINE L2 2524 2734 -579 1931 125 63 0 chr1 31182203 31182490 -251011174 - AluSg SINE Alu -5 305 1 519 298 140 45 chr1 31182490 31182909 -251010755 + L2 LINE L2 2734 3299 -14 669 198 0 0 chr1 31183205 31183326 -251010338 + FRAM SINE Alu 1 121 -55 186 43 0 0 chr1 31183343 31183366 -251010298 + (CAA)n Simple_repeat Simple_repeat 2 24 0 189 133 0 0 chr1 31183465 31183495 -251010169 + MIR SINE MIR 110 139 -69 1018 211 5 0 chr1 31183509 31183703 -251009961 - LTR44 LTR ERV1 -3 516 322 2317 79 13 0 chr1 31183708 31184012 -251009652 - AluSp SINE Alu -5 308 1 2036 114 0 3 chr1 31184012 31184309 -251009355 - AluY SINE Alu -15 296 1 562 204 210 0 chr1 31184315 31184491 -251009173 + L2 LINE L2 1295 1507 -1807 528 197 299 14 chr1 31184495 31184642 -251009022 + MER5A DNA MER1_type 1 189 0 2514 250 124 30 chr1 31184646 31184730 -251008934 + L2 LINE L2 1514 1589 -1725 1633 147 39 7 chr1 31184730 31185036 -251008628 + AluJb SINE Alu 1 312 0 2514 250 124 30 chr1 31185036 31185157 -251008507 + L2 LINE L2 1589 1697 -1617 1823 174 7 0 chr1 31185157 31185467 -251008197 - AluJb SINE Alu 0 312 1 2514 250 124 30 chr1 31185467 31186019 -251007645 + L2 LINE L2 1697 2375 -939 2232 92 7 0 chr1 31186019 31186314 -251007350 - AluSx SINE Alu -15 297 1 2514 250 124 30 chr1 31186314 31186474 -251007190 + L2 LINE L2 2375 2519 -795 1950 167 61 63 chr1 31186488 31186948 -251006716 - LTR2B LTR ERV1 0 490 32 927 281 105 16 chr1 31186955 31187471 -251006193 + L2 LINE L2 2557 3110 -203 297 333 92 7 chr1 31187671 31187812 -251005852 + MIR3 SINE MIR 20 172 -36 246 272 22 11 chr1 31187822 31187914 -251005750 + L2 LINE L2 2500 2592 -722 421 70 35 0 chr1 31187920 31187977 -251005687 - AluSp/q SINE Alu -91 222 164 2247 74 7 10 chr1 31187977 31188275 -251005389 - AluY SINE Alu -14 297 1 1311 87 22 0 chr1 31188456 31188641 -251005023 + AluY SINE Alu 108 296 -15 379 253 227 20 chr1 31188845 31188995 -251004669 - MIR SINE MIR -48 214 34 24 53 0 0 chr1 31189232 31189270 -251004394 + AT_rich Low_complexity Low_complexity 1 38 0 221 171 0 0 chr1 31189550 31189591 -251004073 + A-rich Low_complexity Low_complexity 1 41 0 195 229 125 0 chr1 31190440 31190488 -251003176 - L2 LINE L2 -2 3311 3258 1882 122 35 3 chr1 31190746 31191032 -251002632 + AluSx SINE Alu 1 295 -17 221 231 0 0 chr1 31191225 31191264 -251002400 + polypyrimidine Low_complexity Low_complexity 4 42 0 696 84 72 18 chr1 31191265 31191432 -251002232 + CT-rich Low_complexity Low_complexity 4 179 0 1905 135 16 13 chr1 31191463 31191774 -251001890 - AluSx SINE Alu 0 312 1 1034 133 19 0 chr1 31192411 31192569 -251001095 + AluSg/x SINE Alu 95 255 -55 2641 209 143 15 chr1 31192654 31193212 -251000452 - L1MC4a LINE L1 -6 7807 7322 1215 190 122 4 chr1 31193212 31193475 -251000189 - AluJo SINE Alu -7 295 2 2641 209 143 15 chr1 31193475 31193752 -250999912 - L1MC4a LINE L1 -491 7322 7082 1148 188 156 0 chr1 31193752 31194002 -250999662 + AluJo SINE Alu 1 289 -13 2641 209 143 15 chr1 31194002 31194115 -250999549 - L1MC4a LINE L1 -731 7082 6795 1882 128 20 7 chr1 31194134 31194439 -250999225 - AluSg SINE Alu -1 309 1 2074 96 0 42 chr1 31194810 31195123 -250998541 + AluSq SINE Alu 1 300 -13 181 281 22 45 chr1 31196180 31196269 -250997395 + MIR SINE MIR 61 147 -115 1860 105 10 64 chr1 31196330 31196643 -250997021 - AluSx SINE Alu -16 296 1 1656 78 0 5 chr1 31196739 31196958 -250996706 + AluSg/x SINE Alu 85 302 -10 238 274 27 14 chr1 31197019 31197092 -250996572 - MIR SINE MIR -115 147 74 2324 63 0 0 chr1 31197168 31197490 -250996174 + AluY SINE Alu 1 322 0 1514 177 3 38 chr1 31197833 31198150 -250995514 + AluJo SINE Alu 1 306 -6 293 109 62 47 chr1 31198198 31198262 -250995402 + L1MC4 LINE L1 6954 7018 -1024 1098 173 117 4 chr1 31198263 31198512 -250995152 + L1MC4 LINE L1 7177 7453 -589 1267 173 46 59 chr1 31198559 31198865 -250994799 + AluJb SINE Alu 1 302 -10 981 225 66 38 chr1 31198870 31199190 -250994474 + L1MC4 LINE L1 7620 7948 -94 1261 174 47 74 chr1 31199217 31199333 -250994331 + AluJo SINE Alu 1 119 -183 198 0 0 0 chr1 31199333 31199355 -250994309 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1261 174 47 74 chr1 31199355 31199536 -250994128 + AluJo SINE Alu 119 290 -12 1294 125 121 12 chr1 31199670 31199910 -250993754 + AluJb SINE Alu 1 266 -46 883 147 19 6 chr1 31199956 31200112 -250993552 + FAM SINE Alu 1 47 -2 1044 164 5 15 chr1 31200126 31200327 -250993337 + AluSx SINE Alu 1 199 -113 500 86 14 0 chr1 31200327 31200397 -250993267 + AluSq SINE Alu 67 137 -175 2011 112 6 19 chr1 31200397 31200709 -250992955 + AluSg1 SINE Alu 1 308 -1 2264 76 3 16 chr1 31200719 31201035 -250992629 + AluSp SINE Alu 1 312 -1 312 181 145 12 chr1 31201042 31201125 -250992539 + L1M4 LINE L1 3126 3219 -2927 245 114 0 0 chr1 31201125 31201169 -250992495 + L1MA7 LINE L1 6234 6277 -14 1025 131 6 23 chr1 31201203 31201218 -250992446 + AluSq SINE Alu 121 135 -178 2105 112 0 13 chr1 31201218 31201531 -250992133 + AluSc SINE Alu 1 309 0 1025 131 6 23 chr1 31201531 31201690 -250991974 + AluSq SINE Alu 135 292 -21 1796 121 53 14 chr1 31201846 31202128 -250991536 + AluSx SINE Alu 1 293 -19 185 83 0 0 chr1 31202131 31202155 -250991509 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2359 56 0 0 chr1 31202575 31202862 -250990802 - AluY SINE Alu -24 287 1 22 0 0 0 chr1 31203106 31203128 -250990536 + AT_rich Low_complexity Low_complexity 1 22 0 423 202 158 9 chr1 31203135 31203237 -250990427 + AluJo SINE Alu 5 127 -185 2035 80 22 4 chr1 31203237 31203513 -250990151 - AluSp SINE Alu -27 286 6 423 202 158 9 chr1 31203513 31203524 -250990140 + AluJo SINE Alu 127 135 -177 1529 177 19 29 chr1 31203535 31203845 -250989819 + AluJb SINE Alu 1 307 -5 198 0 0 0 chr1 31203846 31203868 -250989796 + (CA)n Simple_repeat Simple_repeat 2 23 0 2752 157 82 6 chr1 31203868 31204095 -250989569 + Tigger3b DNA MER2_type 4 212 -2816 1955 126 3 10 chr1 31204095 31204388 -250989276 + AluSx SINE Alu 1 291 -21 1923 92 26 4 chr1 31204388 31204659 -250989005 + AluY SINE Alu 1 278 -33 306 0 0 0 chr1 31204659 31204693 -250988971 + (CA)n Simple_repeat Simple_repeat 1 34 0 2752 157 82 6 chr1 31204693 31204987 -250988677 + Tigger3b DNA MER2_type 211 567 -664 2043 122 0 3 chr1 31204988 31205291 -250988373 - AluSx SINE Alu -10 302 1 1656 124 71 4 chr1 31205294 31205560 -250988104 + Tigger3b DNA MER2_type 948 1231 0 370 280 56 0 chr1 31205773 31205880 -250987784 - MER5A DNA MER1_type -8 181 69 198 270 54 40 chr1 31205986 31206060 -250987604 + MER5B DNA MER1_type 81 155 -23 202 250 29 88 chr1 31206193 31206261 -250987403 + MIR SINE MIR 30 94 -114 1097 189 161 0 chr1 31206592 31206841 -250986823 - AluJo SINE Alu -23 289 1 198 321 223 23 chr1 31206869 31207084 -250986580 + MIR SINE MIR 5 262 0 321 300 94 38 chr1 31207107 31207267 -250986397 + L1ME4a LINE L1 5908 6076 -45 225 0 0 0 chr1 31208150 31208175 -250985489 + (CAGG)n Simple_repeat Simple_repeat 2 26 0 1107 164 103 0 chr1 31209033 31209247 -250984417 - MER46A DNA MER2_type 0 236 1 479 292 56 52 chr1 31209382 31209615 -250984049 + MIR SINE MIR 29 262 0 206 171 139 108 chr1 31209697 31209826 -250983838 + L2 LINE L2 2266 2398 -916 191 281 47 94 chr1 31209849 31209977 -250983687 + L2 LINE L2 2531 2652 -662 863 130 80 49 chr1 31209978 31210140 -250983524 - AluSg/x SINE Alu -12 300 134 1791 112 72 0 chr1 31210140 31210418 -250983246 - AluSq SINE Alu -15 298 1 1914 122 0 7 chr1 31210420 31210714 -250982950 - AluSx SINE Alu -20 292 1 288 307 157 0 chr1 31210724 31210864 -250982800 + MIR SINE MIR 91 252 -10 2217 103 0 3 chr1 31210953 31211263 -250982401 + AluSx SINE Alu 1 309 -3 1451 159 10 92 chr1 31211407 31211721 -250981943 - AluJb SINE Alu -24 288 1 989 167 167 83 chr1 31211835 31211905 -250981759 + MER63 DNA MER1_type 490 553 -508 1661 160 10 10 chr1 31211905 31212193 -250981471 - AluJo SINE Alu -18 294 7 989 167 167 83 chr1 31212193 31212366 -250981298 + MER63 DNA MER1_type 553 771 -290 1876 120 27 17 chr1 31212366 31212666 -250980998 + AluSg SINE Alu 1 303 -7 989 167 167 83 chr1 31212666 31212757 -250980907 + MER63 DNA MER1_type 771 853 -208 325 240 150 0 chr1 31212868 31212968 -250980696 + MIR SINE MIR 33 147 -115 180 179 0 0 chr1 31212998 31213026 -250980638 - L2 LINE L2 -28 3285 3258 1087 99 13 0 chr1 31213696 31213848 -250979816 - AluSg/x SINE Alu -22 290 137 1873 153 7 0 chr1 31213849 31214149 -250979515 - AluSx SINE Alu -10 302 1 21 71 0 0 chr1 31214189 31214231 -250979433 + AT_rich Low_complexity Low_complexity 1 42 0 201 320 244 5 chr1 31214462 31214659 -250979005 - L3 LINE CR1 -45 1532 1289 2211 105 7 0 chr1 31214671 31214977 -250978687 + AluSq SINE Alu 1 308 -5 2096 57 40 27 chr1 31215488 31215785 -250977879 + AluY SINE Alu 9 309 -2 293 269 99 23 chr1 31216010 31216181 -250977483 + L1ME LINE L1 5677 5860 -261 558 312 210 32 chr1 31216903 31217547 -250976117 + L2 LINE L2 2000 2797 -517 2298 74 3 3 chr1 31217547 31217844 -250975820 + AluSp SINE Alu 2 298 -15 558 312 210 32 chr1 31217844 31217948 -250975716 + L2 LINE L2 2797 2881 -433 273 75 0 0 chr1 31217956 31217996 -250975668 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 245 187 176 44 chr1 31218002 31218093 -250975571 - L2 LINE L2 -14 3299 3197 * 371 342 123 31 chr1 31218070 31218421 -250975243 + L2 LINE L2 2890 3272 0 2141 108 0 3 chr1 31218544 31218849 -250974815 - AluSx SINE Alu -8 304 1 249 309 100 9 chr1 31218992 31219102 -250974562 + MIR SINE MIR 18 137 -71 303 296 143 67 chr1 31219213 31219436 -250974228 + MIR SINE MIR 12 251 -11 2166 110 3 0 chr1 31219485 31219795 -250973869 + AluSp SINE Alu 1 311 -2 2147 103 7 3 chr1 31220017 31220318 -250973346 + AluSx SINE Alu 1 302 -10 1603 144 12 0 chr1 31220340 31220597 -250973067 - AluJb SINE Alu -15 297 38 1408 191 35 11 chr1 31220597 31220879 -250972785 - L1ME3 LINE L1 -16 6146 5858 1653 134 78 0 chr1 31220879 31221162 -250972502 + AluJo SINE Alu 1 305 -7 463 273 28 7 chr1 31221639 31221782 -250971882 - LTR67 LTR ERVL -1 556 411 2081 135 0 0 chr1 31221876 31222173 -250971491 - AluSx SINE Alu -15 297 1 38 85 0 0 chr1 31223082 31223176 -250970488 + AT_rich Low_complexity Low_complexity 1 94 0 1991 141 7 3 chr1 31223189 31223486 -250970178 - AluJb SINE Alu -14 298 1 2235 133 0 0 chr1 31223679 31223987 -250969677 + AluSx SINE Alu 2 309 -3 2230 97 17 3 chr1 31224272 31224561 -250969103 - AluSx SINE Alu -18 294 2 2441 91 3 0 chr1 31226142 31226450 -250967214 + AluSp SINE Alu 1 309 -4 2151 127 0 3 chr1 31226538 31226829 -250966835 - AluSx SINE Alu -22 290 1 295 289 19 39 chr1 31227616 31227720 -250965944 + L2 LINE L2 3162 3263 -50 1640 161 19 47 chr1 31227730 31227787 -250965877 - MLT2D LTR ERVL -2 412 355 2299 104 0 0 chr1 31227787 31228084 -250965580 - AluY SINE Alu -14 297 1 1640 161 19 47 chr1 31228084 31228348 -250965316 - MLT2D LTR ERVL -59 355 100 1816 184 0 0 chr1 31228348 31228641 -250965023 + AluJo SINE Alu 1 293 -19 252 241 17 0 chr1 31229134 31229192 -250964472 - MIR3 SINE MIR -36 172 114 320 306 30 22 chr1 31229252 31229386 -250964278 + MIR SINE MIR 103 237 -25 541 248 7 15 chr1 31229432 31229569 -250964095 + MIR3 SINE MIR 34 169 -39 2221 92 0 67 chr1 31229583 31229897 -250963767 - AluSx SINE Alu -19 293 1 376 280 76 81 chr1 31231059 31231153 -250962511 - MIR SINE MIR -13 249 156 1519 173 0 12 chr1 31231153 31231402 -250962262 - AluJo SINE Alu -51 261 16 376 280 76 81 chr1 31231402 31231518 -250962146 - MIR SINE MIR -106 156 40 927 243 171 35 chr1 31231651 31231714 -250961950 - MLT1L LTR MaLR -8 607 554 2279 113 0 0 chr1 31231714 31232007 -250961657 - AluSx SINE Alu -19 293 1 927 243 171 35 chr1 31232007 31232317 -250961347 - MLT1L LTR MaLR -61 554 183 1793 194 121 50 chr1 31232345 31232841 -250960823 - MLT1H LTR MaLR -18 531 1 257 309 56 43 chr1 31232841 31233003 -250960661 - MLT1L LTR MaLR -446 169 6 305 95 0 0 chr1 31233544 31233586 -250960078 - THE1A LTR MaLR 0 355 314 1104 62 0 0 chr1 31233586 31233715 -250959949 + AluY SINE Alu 1 129 -182 774 90 0 0 chr1 31233715 31233815 -250959849 - THE1B LTR MaLR -260 104 5 398 238 126 28 chr1 31234144 31234287 -250959377 - MIR SINE MIR -93 169 13 640 289 32 32 chr1 31234447 31234518 -250959146 - L2 LINE L2 -648 2666 2596 2088 123 3 0 chr1 31234518 31234803 -250958861 + AluSx SINE Alu 21 306 -6 640 289 32 32 chr1 31234803 31234984 -250958680 - L2 LINE L2 -717 2597 2414 2292 97 0 0 chr1 31235122 31235434 -250958230 - AluSx SINE Alu 0 312 1 2325 75 7 0 chr1 31235894 31236222 -250957442 + AluSp SINE Alu 1 330 0 449 266 227 20 chr1 31236346 31236549 -250957115 + MIR SINE MIR 6 250 -12 747 133 31 8 chr1 31236625 31236753 -250956911 + FLAM_C SINE Alu 3 133 0 2330 91 0 23 chr1 31236763 31237071 -250956593 + AluSc SINE Alu 1 301 -8 2237 125 6 3 chr1 31237203 31237514 -250956150 - AluSx SINE Alu 0 312 1 2176 102 0 54 chr1 31237579 31237894 -250955770 - AluSq SINE Alu -15 298 1 1631 175 6 60 chr1 31238051 31238385 -250955279 - AluJb SINE Alu 0 312 1 687 187 0 7 chr1 31238385 31238524 -250955140 - L1PA16 LINE L1 -7 6159 6022 447 325 59 0 chr1 31238662 31238831 -250954833 - L2 LINE L2 -212 3060 2882 217 292 15 0 chr1 31239265 31239330 -250954334 - L2 LINE L2 -1 3312 3247 274 198 189 38 chr1 31239415 31239521 -250954143 + MIR SINE MIR 131 252 -10 379 329 100 42 chr1 31239739 31240049 -250953615 + L2 LINE L2 2945 3272 0 721 272 0 35 chr1 31240081 31240309 -250953355 - MIR SINE MIR -13 249 30 32 43 0 0 chr1 31240607 31240653 -250953011 + GC_rich Low_complexity Low_complexity 1 46 0 681 258 35 5 chr1 31242541 31242739 -250950925 + MIR SINE MIR 36 239 -23 272 252 44 124 chr1 31243219 31243395 -250950269 - MIR3 SINE MIR -28 180 30 1752 147 50 4 chr1 31243478 31243757 -250949907 - AluJb SINE Alu -20 292 1 364 260 166 6 chr1 31244229 31244398 -250949266 + MIR SINE MIR 7 202 -60 401 272 95 27 chr1 31245526 31245673 -250947991 + MIR SINE MIR 54 210 -52 252 274 137 33 chr1 31246009 31246067 -250947597 + MIR SINE MIR 60 111 -151 2179 82 3 49 chr1 31246067 31246372 -250947292 - AluSx SINE Alu -21 291 1 252 274 137 33 chr1 31246372 31246466 -250947198 + MIR SINE MIR 111 228 -34 181 329 31 62 chr1 31246743 31246904 -250946760 - L2 LINE L2 -188 3084 2929 398 233 252 0 chr1 31247548 31247651 -250946013 + FLAM_A SINE Alu 1 129 -4 323 255 91 44 chr1 31247927 31248094 -250945570 - MIR SINE MIR -63 145 16 710 266 38 30 chr1 31248222 31248459 -250945205 + MIR SINE MIR 13 251 -11 2248 104 7 0 chr1 31248546 31248833 -250944831 - AluSx SINE Alu -9 303 15 1629 173 40 14 chr1 31248897 31249175 -250944489 + AluJo SINE Alu 1 285 -27 539 78 0 13 chr1 31249175 31249252 -250944412 - AluS SINE Alu -235 77 2 264 263 105 94 chr1 31249281 31249442 -250944222 - L1ME4a LINE L1 0 6121 5963 2278 119 0 16 chr1 31249442 31249760 -250943904 - AluSq SINE Alu 0 313 1 772 150 0 8 chr1 31249762 31249889 -250943775 - AluJo/FLAM SINE Alu -175 127 2 264 263 105 94 chr1 31249889 31250112 -250943552 - L1ME4a LINE L1 -158 5963 5744 829 148 0 0 chr1 31250112 31250240 -250943424 + FLAM_C SINE Alu 3 130 -3 264 263 105 94 chr1 31250240 31250298 -250943366 - L1ME4a LINE L1 -377 5744 5667 2395 76 10 0 chr1 31250298 31250601 -250943063 - AluSp SINE Alu -7 306 1 264 263 105 94 chr1 31250601 31250620 -250943044 - L1ME4a LINE L1 -454 5667 5650 413 255 20 0 chr1 31250620 31250722 -250942942 + L3 LINE CR1 1376 1479 -98 2044 113 0 31 chr1 31250799 31250819 -250942845 - AluSx SINE Alu -8 304 285 237 65 0 0 chr1 31250819 31250850 -250942814 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2044 113 0 31 chr1 31250850 31251122 -250942542 - AluSx SINE Alu -27 285 21 2286 110 3 10 chr1 31251543 31251715 -250941949 - AluSx SINE Alu -6 306 135 2271 89 3 17 chr1 31251715 31252046 -250941618 - AluSg SINE Alu 0 310 1 2286 110 3 10 chr1 31252046 31252181 -250941483 - AluSx SINE Alu -177 135 1 2303 113 0 3 chr1 31252248 31252550 -250941114 + AluSx SINE Alu 1 301 -11 2465 70 3 16 chr1 31252655 31252970 -250940694 - AluY SINE Alu 0 311 1 610 284 38 38 chr1 31252980 31253193 -250940471 - MIR SINE MIR -14 248 33 2404 72 0 10 chr1 31253193 31253486 -250940178 - AluY SINE Alu -21 290 1 610 284 38 38 chr1 31253486 31253508 -250940156 - MIR SINE MIR -228 34 13 274 277 122 47 chr1 31253523 31253671 -250939993 - MIR3 SINE MIR -36 172 14 2390 93 0 0 chr1 31253745 31254036 -250939628 - AluSg SINE Alu -19 291 1 289 229 174 18 chr1 31254173 31254282 -250939382 + MIR SINE MIR 50 175 -87 500 198 54 0 chr1 31254292 31254403 -250939261 - L2 LINE L2 -39 3274 3158 12138 101 143 33 chr1 31254478 31254593 -250939071 - Tigger1 DNA MER2_type 0 2418 2317 1961 142 27 3 chr1 31254593 31254888 -250938776 + AluJb SINE Alu 1 302 -10 12138 101 143 33 chr1 31254888 31255365 -250938299 - Tigger1 DNA MER2_type -101 2317 1894 2080 149 0 3 chr1 31255365 31255673 -250937991 + AluJb SINE Alu 1 307 -5 948 164 61 0 chr1 31255681 31255846 -250937818 - FAM SINE Alu 0 175 1 12138 101 143 33 chr1 31255846 31256075 -250937589 - Tigger1 DNA MER2_type -530 1888 1685 1723 157 26 42 chr1 31256075 31256388 -250937276 - AluJo SINE Alu -4 308 1 12138 101 143 33 chr1 31256388 31256893 -250936771 - Tigger1 DNA MER2_type -733 1685 1237 966 168 6 12 chr1 31256893 31257060 -250936604 + FRAM SINE Alu 1 166 0 2478 88 0 0 chr1 31257060 31257357 -250936307 + AluSx SINE Alu 1 297 -15 12138 101 143 33 chr1 31257357 31257709 -250935955 - Tigger1 DNA MER2_type -1181 1237 925 2443 93 3 3 chr1 31257709 31258021 -250935643 - AluSx SINE Alu 0 312 1 12138 101 143 33 chr1 31258021 31258058 -250935606 - Tigger1 DNA MER2_type -1493 925 893 1945 155 7 3 chr1 31258058 31258361 -250935303 - AluJo SINE Alu -8 304 1 12138 101 143 33 chr1 31258361 31258594 -250935070 - Tigger1 DNA MER2_type -1525 893 687 1848 149 10 7 chr1 31258594 31258908 -250934756 + AluJb SINE Alu 1 315 0 12138 101 143 33 chr1 31258908 31259104 -250934560 - Tigger1 DNA MER2_type -1731 687 20 251 114 0 0 chr1 31259158 31259202 -250934462 - L2 LINE L2 -336 2977 2934 2345 85 3 3 chr1 31259582 31259876 -250933788 + AluSc SINE Alu 1 294 -15 1654 129 30 0 chr1 31259958 31260190 -250933474 - AluJb SINE Alu -73 239 1 747 262 25 5 chr1 31260221 31260423 -250933241 - MIR SINE MIR -29 233 28 23 0 0 0 chr1 31260582 31260605 -250933059 + AT_rich Low_complexity Low_complexity 1 23 0 1886 150 3 39 chr1 31260676 31260982 -250932682 + AluJo SINE Alu 1 295 -17 322 281 89 62 chr1 31260988 31261212 -250932452 + MIR SINE MIR 5 234 -28 523 256 7 7 chr1 31261448 31261585 -250932079 - MIR SINE MIR -55 207 71 518 299 32 41 chr1 31261670 31261695 -250931969 + MIR SINE MIR 15 39 -223 1439 175 138 20 chr1 31261695 31262049 -250931615 - MLT2C1 LTR ERVL 0 397 2 518 299 32 41 chr1 31262049 31262244 -250931420 + MIR SINE MIR 39 233 -29 2241 78 0 0 chr1 31262296 31262564 -250931100 - AluSq SINE Alu -45 268 1 2085 157 3 0 chr1 31262722 31263028 -250930636 - AluJb SINE Alu -1 311 5 221 222 0 0 chr1 31264063 31264108 -250929556 + MIR3 SINE MIR 115 159 -49 705 285 21 25 chr1 31264131 31264373 -250929291 + MIR SINE MIR 12 252 -10 883 205 118 31 chr1 31264522 31264586 -250929078 - MLT1C LTR MaLR -5 462 405 2399 79 14 0 chr1 31264586 31264878 -250928786 + AluSg SINE Alu 1 296 -14 883 205 118 31 chr1 31264878 31265067 -250928597 - MLT1C LTR MaLR -62 405 187 627 176 206 0 chr1 31265075 31265211 -250928453 - AluJb SINE Alu -23 289 126 3306 92 8 44 chr1 31265212 31265714 -250927950 - MER1A DNA MER1_type 0 529 46 2365 113 0 0 chr1 31265720 31266029 -250927635 + AluSc SINE Alu 1 309 0 688 161 59 0 chr1 31266055 31266173 -250927491 - AluJb SINE Alu -187 125 1 722 149 130 7 chr1 31266175 31266329 -250927335 - MLT1C LTR MaLR -289 178 6 278 232 85 12 chr1 31266345 31266427 -250927237 + MIR SINE MIR 119 206 -56 382 240 0 66 chr1 31266756 31266877 -250926787 + MIR3 SINE MIR 82 194 -14 565 330 19 10 chr1 31267028 31267237 -250926427 - MIR SINE MIR -32 230 20 912 163 7 13 chr1 31267250 31267403 -250926261 - FAM SINE Alu -9 40 1 1064 228 95 26 chr1 31267418 31267765 -250925899 - MLT1C LTR MaLR -3 464 94 256 260 13 26 chr1 31268216 31268293 -250925371 + GA-rich Low_complexity Low_complexity 2 77 0 278 274 51 51 chr1 31268383 31268500 -250925164 - L2 LINE L2 -28 3244 3128 389 333 0 0 chr1 31268500 31268617 -250925047 - L2 LINE L2 0 3272 3156 994 143 0 0 chr1 31268623 31268763 -250924901 - FRAM SINE Alu -29 147 8 478 219 176 48 chr1 31268867 31268992 -250924672 + MIR SINE MIR 48 206 -56 2290 120 3 0 chr1 31268992 31269301 -250924363 + AluSx SINE Alu 1 310 -2 478 219 176 48 chr1 31269301 31269362 -250924302 + MIR SINE MIR 206 258 -4 261 287 139 16 chr1 31269760 31269882 -250923782 + MIR SINE MIR 13 149 -113 2124 121 3 33 chr1 31270031 31270375 -250923289 - AluSx SINE Alu 0 335 1 2104 147 3 0 chr1 31270375 31270681 -250922983 - AluJb SINE Alu -5 307 1 1099 164 16 38 chr1 31271138 31271321 -250922343 + AluJo SINE Alu 1 179 -133 304 306 19 9 chr1 31271432 31271540 -250922124 - MIR SINE MIR -101 161 53 2024 152 14 0 chr1 31271613 31271975 -250921689 - L1MB3 LINE L1 -2 6181 5815 1265 137 15 10 chr1 31271976 31272173 -250921491 - AluJb SINE Alu -15 297 100 2627 165 61 18 chr1 31272180 31272658 -250921006 - L1MB3 LINE L1 -354 5829 5373 2053 158 0 0 chr1 31272658 31272943 -250920721 - AluJb SINE Alu -27 285 1 2627 165 61 18 chr1 31272943 31273092 -250920572 - L1MB3 LINE L1 -810 5373 5179 1831 123 0 25 chr1 31273092 31273376 -250920288 - AluSx SINE Alu -13 299 23 2627 165 61 18 chr1 31273376 31273415 -250920249 - L1MB3 LINE L1 -1004 5179 5143 1104 79 0 0 chr1 31273415 31273554 -250920110 + AluSg SINE Alu 1 139 -171 1958 112 34 17 chr1 31273554 31273848 -250919816 + AluSx SINE Alu 1 299 -13 317 216 0 57 chr1 31273848 31273936 -250919728 - L1MB3 LINE L1 -993 5153 5071 716 179 43 0 chr1 31273987 31274127 -250919537 - L1MB3 LINE L1 -1053 5093 4948 826 323 40 18 chr1 31274226 31274594 -250919070 + L2 LINE L2 2632 3009 -263 726 181 38 127 chr1 31274610 31274805 -250918859 - MLT1A2 LTR MaLR -13 415 195 1943 89 0 0 chr1 31274805 31275064 -250918600 + AluSx SINE Alu 53 311 -1 726 181 38 127 chr1 31275064 31275131 -250918533 - MLT1A2 LTR MaLR -233 195 124 1063 83 17 17 chr1 31275174 31275354 -250918310 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 186 55 164 0 chr1 31275356 31275411 -250918253 + CT-rich Low_complexity Low_complexity 1 64 0 2132 107 0 0 chr1 31275413 31275704 -250917960 - AluSq SINE Alu -22 291 1 1801 157 11 0 chr1 31275904 31276214 -250917450 + AluJb SINE Alu 1 313 0 1998 104 10 7 chr1 31276320 31276609 -250917055 + AluSg SINE Alu 2 291 -19 392 155 56 0 chr1 31276625 31276696 -250916968 - MLT1A2 LTR MaLR -299 75 1 297 289 68 105 chr1 31276696 31276990 -250916674 + L2 LINE L2 3029 3311 -2 400 250 18 18 chr1 31277094 31277206 -250916458 + MIR SINE MIR 48 159 -103 690 294 54 75 chr1 31277229 31277473 -250916191 + HAL1 LINE L1 305 536 -1971 905 92 0 8 chr1 31277473 31277592 -250916072 + FLAM_C SINE Alu 1 118 -15 690 294 54 75 chr1 31277592 31277830 -250915834 + HAL1 LINE L1 536 777 -1730 321 186 0 0 chr1 31277840 31277910 -250915754 + (CA)n Simple_repeat Simple_repeat 2 71 0 2437 267 61 74 chr1 31277913 31278228 -250915436 + HAL1 LINE L1 782 1100 -1407 2401 62 0 3 chr1 31278228 31278532 -250915132 - AluY SINE Alu -8 303 1 2437 267 61 74 chr1 31278532 31278559 -250915105 + HAL1 LINE L1 1100 1126 -1381 1416 183 21 21 chr1 31278559 31278681 -250914983 + AluJo SINE Alu 1 122 -212 2176 99 3 0 chr1 31278681 31278975 -250914689 - AluSp SINE Alu -18 295 1 1416 183 21 21 chr1 31278975 31279186 -250914478 + AluJo SINE Alu 121 334 0 2437 267 61 74 chr1 31279186 31279942 -250913722 + HAL1 LINE L1 1126 1890 -617 2245 61 57 0 chr1 31279942 31280238 -250913426 + AluSp SINE Alu 1 313 0 2397 71 3 0 chr1 31280238 31280548 -250913116 + AluY SINE Alu 1 311 0 2437 267 61 74 chr1 31280548 31280876 -250912788 + HAL1 LINE L1 1884 2194 -309 1024 181 0 0 chr1 31280876 31281036 -250912628 + FAM SINE Alu 1 160 -15 2119 127 0 6 chr1 31281058 31281372 -250912292 - AluSq SINE Alu -1 312 1 440 275 206 13 chr1 31281498 31281731 -250911933 + MLT1J2 LTR MaLR 20 297 -153 718 242 39 35 chr1 31281858 31282089 -250911575 + HAL1 LINE L1 2276 2507 0 1969 138 20 0 chr1 31282089 31282393 -250911271 - AluJb SINE Alu -2 310 1 1560 168 21 7 chr1 31282587 31282873 -250910791 - AluJo SINE Alu -22 290 1 2198 99 3 0 chr1 31283010 31283302 -250910362 - AluSg SINE Alu -17 293 1 1312 251 91 42 chr1 31283302 31283847 -250909817 - L2 LINE L2 -26 3287 2709 515 275 42 36 chr1 31284479 31284627 -250909037 + MIR3 SINE MIR 7 158 -50 438 286 15 61 chr1 31284627 31284823 -250908841 - MER5A DNA MER1_type -1 188 2 515 275 42 36 chr1 31284823 31284867 -250908797 + MIR3 SINE MIR 158 200 -8 592 282 31 31 chr1 31285537 31285732 -250907932 - MIR SINE MIR -20 242 48 1499 178 32 23 chr1 31285807 31285993 -250907671 - AluJb SINE Alu 0 312 120 204 40 0 0 chr1 31285993 31286018 -250907646 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1499 178 32 23 chr1 31286018 31286140 -250907524 - AluJb SINE Alu -192 120 1 2197 86 0 17 chr1 31286145 31286447 -250907217 - AluSc SINE Alu -12 297 1 2572 32 0 6 chr1 31286453 31286766 -250906898 - AluY SINE Alu 0 311 1 203 276 0 122 chr1 31286854 31286897 -250906767 + MIR SINE MIR 38 64 -144 2174 123 0 0 chr1 31286897 31287198 -250906466 - AluSq SINE Alu -12 301 1 203 276 0 122 chr1 31287198 31287252 -250906412 + MIR SINE MIR 64 123 -85 384 230 317 45 chr1 31288226 31288435 -250905229 - MLT1J2 LTR MaLR -21 425 274 2168 114 3 0 chr1 31288435 31288732 -250904932 + AluSx SINE Alu 1 298 -14 384 230 317 45 chr1 31288732 31288809 -250904855 - MLT1J2 LTR MaLR -172 274 61 362 314 36 15 chr1 31288990 31289127 -250904537 - MIR3 SINE MIR -54 154 15 249 280 200 0 chr1 31289412 31289512 -250904152 + MIR3 SINE MIR 77 196 -12 360 325 152 0 chr1 31289582 31289773 -250903891 - L3 LINE CR1 -13 1564 1345 1959 150 3 0 chr1 31289789 31290096 -250903568 - AluJb SINE Alu -4 308 1 341 301 128 20 chr1 31290212 31290252 -250903412 - MIR SINE MIR -18 244 210 2274 88 0 19 chr1 31290252 31290569 -250903095 - AluY SINE Alu 0 311 1 341 301 128 20 chr1 31290569 31290724 -250902940 - MIR SINE MIR -52 210 28 211 387 14 7 chr1 31290848 31290990 -250902674 - L2 LINE L2 -208 3064 2922 1713 131 28 3 chr1 31292339 31292621 -250901043 + AluJo SINE Alu 1 289 -23 232 245 0 0 chr1 31292622 31292671 -250900993 + GA-rich Low_complexity Low_complexity 1 49 0 195 196 43 0 chr1 31294175 31294221 -250899443 - L2 LINE L2 -207 3065 3018 253 315 139 79 chr1 31294412 31294780 -250898884 - L2 LINE L2 -14 3258 2869 530 291 84 24 chr1 31294786 31294999 -250898665 - MIR SINE MIR -14 248 23 1494 151 0 94 chr1 31295354 31295547 -250898117 - AluJo SINE Alu -12 300 149 2102 107 3 13 chr1 31295547 31295857 -250897807 - AluSx SINE Alu -5 307 1 1494 151 0 94 chr1 31295857 31295994 -250897670 - AluJo SINE Alu -163 149 1 344 189 165 6 chr1 31296052 31296172 -250897492 + MIR SINE MIR 105 250 -12 329 296 32 0 chr1 31296322 31296447 -250897217 - L2 LINE L2 -1220 2094 1966 387 233 75 33 chr1 31296531 31296651 -250897013 + MIR3 SINE MIR 45 169 -39 264 229 43 29 chr1 31296674 31296744 -250896920 + MIR SINE MIR 42 112 -96 193 260 20 0 chr1 31296784 31296834 -250896830 + L2 LINE L2 3251 3301 -12 2261 105 0 0 chr1 31296912 31297217 -250896447 + AluSg SINE Alu 1 305 -5 663 214 31 35 chr1 31297845 31298048 -250895616 - MIR SINE MIR -39 223 16 191 279 162 18 chr1 31298280 31298391 -250895273 + MIR SINE MIR 59 185 -77 180 255 21 0 chr1 31298401 31298448 -250895216 + L2 LINE L2 3205 3252 -61 197 135 0 54 chr1 31298489 31298526 -250895138 + MIR SINE MIR 214 248 -14 2239 89 30 0 chr1 31298592 31298895 -250894769 - AluSx SINE Alu 0 312 1 233 273 122 58 chr1 31299203 31299342 -250894322 + MIR3 SINE MIR 33 180 -28 2253 82 7 0 chr1 31299772 31300065 -250893599 + AluSg1 SINE Alu 1 295 -14 255 61 0 0 chr1 31300865 31300898 -250892766 + (TG)n Simple_repeat Simple_repeat 1 33 0 2031 102 7 3 chr1 31300951 31301245 -250892419 - AluSx SINE Alu -17 295 1 217 244 44 67 chr1 31301302 31301344 -250892320 + MIR SINE MIR 105 146 -116 2239 87 13 3 chr1 31301344 31301654 -250892010 + AluSp SINE Alu 1 313 0 217 244 44 67 chr1 31301654 31301701 -250891963 + MIR SINE MIR 146 192 -70 396 0 0 0 chr1 31302124 31302168 -250891496 + (TC)n Simple_repeat Simple_repeat 2 45 0 2159 92 3 0 chr1 31302342 31302681 -250890983 + AluSp SINE Alu 1 340 0 933 140 5 85 chr1 31302687 31302864 -250890800 + FRAM SINE Alu 1 191 -121 1982 113 0 53 chr1 31302864 31303183 -250890481 + AluSx SINE Alu 1 302 -10 2207 108 0 3 chr1 31303191 31303498 -250890166 + AluSq SINE Alu 7 312 -1 933 140 5 85 chr1 31303498 31303511 -250890153 + FRAM SINE Alu 164 176 0 4098 132 37 64 chr1 31303511 31303717 -250889947 + L1MA4A LINE L1 5320 5530 -773 2086 119 0 0 chr1 31303717 31304011 -250889653 - AluSx SINE Alu -18 294 1 4098 132 37 64 chr1 31304011 31304384 -250889280 + L1MA4A LINE L1 5530 5928 -375 1801 103 0 12 chr1 31304384 31304637 -250889027 + AluSx SINE Alu 1 250 -62 4098 132 37 64 chr1 31304637 31304979 -250888685 + L1MA4A LINE L1 5928 6278 -25 1712 146 3 10 chr1 31304985 31305280 -250888384 - AluJb SINE Alu -18 294 2 195 42 0 0 chr1 31305330 31305354 -250888310 + (CA)n Simple_repeat Simple_repeat 1 24 0 2244 63 0 7 chr1 31306014 31306333 -250887331 + AluSc SINE Alu 1 317 0 2462 77 0 0 chr1 31306368 31306679 -250886985 + AluSx SINE Alu 1 311 -1 1552 189 38 0 chr1 31306691 31306982 -250886682 + AluJb SINE Alu 1 302 -10 220 213 0 0 chr1 31306985 31307032 -250886632 - MIR SINE MIR -79 129 83 293 232 95 11 chr1 31307495 31307590 -250886074 - L2 LINE L2 0 3313 3211 2387 91 0 0 chr1 31307592 31307900 -250885764 + AluSg SINE Alu 1 308 -2 448 291 7 26 chr1 31308086 31308237 -250885427 + MIR3 SINE MIR 11 158 -50 1994 134 10 13 chr1 31308412 31308725 -250884939 + AluJb SINE Alu 1 312 0 1113 38 0 0 chr1 31308842 31308974 -250884690 + AluY SINE Alu 1 132 -179 1944 116 7 0 chr1 31308981 31309256 -250884408 - AluSq SINE Alu -36 277 1 2394 74 0 0 chr1 31309274 31309571 -250884093 - AluSx SINE Alu -15 297 1 382 183 37 0 chr1 31309571 31309653 -250884011 + MER69 DNA AcHobo 2439 2523 -3 1604 186 0 23 chr1 31309726 31310032 -250883632 - AluJb SINE Alu -1 311 13 35 0 0 0 chr1 31310044 31310079 -250883585 + AT_rich Low_complexity Low_complexity 1 35 0 772 102 28 0 chr1 31310079 31310187 -250883477 - HY1 scRNA scRNA 0 112 2 643 138 138 0 chr1 31310190 31310306 -250883358 - FLAM_C SINE Alu -1 132 1 356 313 0 0 chr1 31310716 31310812 -250882852 + MIR SINE MIR 53 148 -114 2253 102 0 9 chr1 31311191 31311506 -250882158 - AluSx SINE Alu 0 312 1 473 307 70 14 chr1 31311703 31311918 -250881746 + L2 LINE L2 2863 3089 -183 1493 80 0 20 chr1 31312553 31312753 -250880911 + AluSg/x SINE Alu 105 300 -10 204 175 25 0 chr1 31312756 31312796 -250880868 + MIR SINE MIR 84 124 -84 245 298 0 9 chr1 31313193 31313307 -250880357 + (CA)n Simple_repeat Simple_repeat 2 114 0 450 0 0 0 chr1 31313385 31313435 -250880229 + (CA)n Simple_repeat Simple_repeat 2 51 0 206 236 28 28 chr1 31313758 31313830 -250879834 - MIR SINE MIR -56 206 135 187 261 0 43 chr1 31314167 31314213 -250879451 + L2 LINE L2 3136 3179 -93 889 248 13 18 chr1 31314341 31314567 -250879097 - MIR SINE MIR -1 261 37 232 239 120 33 chr1 31314612 31314704 -250878960 + MIR3 SINE MIR 109 208 0 239 347 11 11 chr1 31314704 31314799 -250878865 + L3 LINE CR1 1367 1461 -116 306 273 220 31 chr1 31314929 31315151 -250878513 - MIR SINE MIR -6 256 3 232 219 31 62 chr1 31316185 31316313 -250877351 + (TCTCTG)n Simple_repeat Simple_repeat 2 125 0 2522 49 0 0 chr1 31316972 31317279 -250876385 - AluY SINE Alu -4 307 1 334 303 10 0 chr1 31317413 31317512 -250876152 + MIR SINE MIR 41 140 -68 2142 105 0 0 chr1 31318351 31318690 -250874974 - AluSx SINE Alu 0 339 1 279 213 93 0 chr1 31318741 31318816 -250874848 + MIR3 SINE MIR 95 176 -32 654 238 136 37 chr1 31318974 31319188 -250874476 - MIR SINE MIR 0 262 28 218 220 76 6 chr1 31319483 31319546 -250874118 + MIR SINE MIR 85 140 -68 185 333 45 0 chr1 31319698 31319764 -250873900 - MIR SINE MIR -119 143 75 313 226 17 144 chr1 31319825 31320006 -250873658 + MIR SINE MIR 49 206 -56 2218 95 3 16 chr1 31320159 31320474 -250873190 + AluSq SINE Alu 1 311 -2 274 307 30 10 chr1 31320475 31320576 -250873088 - MIR SINE MIR -7 255 153 747 224 22 58 chr1 31320629 31320792 -250872872 - MIR SINE MIR -1 261 105 1830 113 84 0 chr1 31320792 31321090 -250872574 + AluSq SINE Alu 1 321 0 747 224 22 58 chr1 31321090 31321147 -250872517 - MIR SINE MIR -157 105 47 2040 120 7 0 chr1 31321147 31321439 -250872225 - AluSx SINE Alu -3 309 16 1776 145 39 0 chr1 31321440 31321723 -250871941 - AluJb SINE Alu -18 294 1 506 221 103 29 chr1 31321765 31321901 -250871763 + L2 LINE L2 3115 3260 -12 181 286 219 9 chr1 31322404 31322509 -250871155 + MIR SINE MIR 28 154 -108 454 261 36 29 chr1 31322523 31322661 -250871003 + L2 LINE L2 3174 3312 -1 218 320 56 23 chr1 31322972 31323142 -250870522 + MIR3 SINE MIR 15 192 -69 408 244 65 16 chr1 31323354 31323477 -250870187 + MIR SINE MIR 48 176 -86 430 321 85 49 chr1 31323622 31323846 -250869818 - MIR SINE MIR -12 250 19 2022 115 10 0 chr1 31323852 31324140 -250869524 - AluSx SINE Alu -21 291 1 788 233 83 31 chr1 31324367 31324595 -250869069 + MIR SINE MIR 23 262 0 202 263 40 61 chr1 31324788 31324887 -250868777 - L2 LINE L2 -35 3237 3141 188 370 14 0 chr1 31324918 31324991 -250868673 - L2 LINE L2 -270 3002 2929 185 317 33 0 chr1 31325561 31325621 -250868043 + MIR SINE MIR 42 103 -105 1640 164 4 4 chr1 31325621 31325895 -250867769 + AluJb SINE Alu 3 276 -36 195 69 0 0 chr1 31325897 31325926 -250867738 + (TAGG)n Simple_repeat Simple_repeat 4 32 0 * 659 158 0 15 chr1 31325920 31326053 -250867611 + G-rich Low_complexity Low_complexity 2 132 0 403 291 119 45 chr1 31326272 31326560 -250867104 - L2 LINE L2 -179 3093 2788 360 351 48 0 chr1 31326702 31326910 -250866754 + MIR SINE MIR 31 248 -14 267 143 54 18 chr1 31327507 31327563 -250866101 + MIR SINE MIR 86 143 -65 365 267 78 0 chr1 31328066 31328156 -250865508 + MIR3 SINE MIR 60 156 -52 699 304 22 13 chr1 31328176 31328403 -250865261 + MIR SINE MIR 6 234 -28 212 200 40 20 chr1 31328520 31328570 -250865094 - L2 LINE L2 0 3313 3263 198 261 21 120 chr1 31328598 31328634 -250865030 + MIR SINE MIR 67 105 -157 2075 137 0 0 chr1 31328634 31328940 -250864724 - AluSx SINE Alu -6 306 1 198 261 21 120 chr1 31328940 31329045 -250864619 + MIR SINE MIR 105 194 -68 1333 253 40 53 chr1 31329131 31329278 -250864386 + L2 LINE L2 2909 3056 -257 2319 86 0 0 chr1 31329278 31329581 -250864083 - AluY SINE Alu -8 303 1 2236 92 0 0 chr1 31329582 31329875 -250863789 - AluSc SINE Alu -16 293 1 2202 110 0 0 chr1 31329877 31330186 -250863478 - AluSx SINE Alu -3 309 1 1333 253 40 53 chr1 31330186 31330429 -250863235 + L2 LINE L2 3057 3299 -14 403 221 90 55 chr1 31331120 31331265 -250862399 + MIR SINE MIR 29 171 -67 760 280 34 5 chr1 31331273 31331480 -250862184 + MIR SINE MIR 2 214 -48 696 280 0 69 chr1 31331556 31331665 -250861999 + MIR SINE MIR 20 106 -156 2092 120 16 3 chr1 31331665 31331973 -250861691 - AluSx SINE Alu 0 312 1 696 280 0 69 chr1 31331973 31332095 -250861569 + MIR SINE MIR 106 235 -27 266 310 110 10 chr1 31332096 31332196 -250861468 - MIR SINE MIR -62 146 37 2188 113 0 0 chr1 31332207 31332517 -250861147 - AluSg SINE Alu 0 310 1 22 0 0 0 chr1 31332521 31332543 -250861121 + AT_rich Low_complexity Low_complexity 1 22 0 1488 168 30 60 chr1 31332827 31332968 -250860696 + MLT1A2 LTR MaLR 34 178 -196 1990 109 0 14 chr1 31332968 31333104 -250860560 + AluSx SINE Alu 1 137 -175 2286 74 10 3 chr1 31333104 31333402 -250860262 + AluY SINE Alu 1 300 -11 1990 109 0 14 chr1 31333402 31333559 -250860105 + AluSx SINE Alu 137 290 -22 2123 112 3 0 chr1 31333567 31333870 -250859794 + AluSx SINE Alu 1 304 -8 1488 168 30 60 chr1 31333870 31334053 -250859611 + MLT1A2 LTR MaLR 185 357 -17 232 344 16 0 chr1 31334062 31334126 -250859538 - MIR SINE MIR -94 114 50 2160 109 0 3 chr1 31334158 31334471 -250859193 - AluSx SINE Alu 0 312 1 2214 79 26 13 chr1 31335118 31335423 -250858241 - AluY SINE Alu -2 309 1 2022 108 3 7 chr1 31335423 31335719 -250857945 - AluSq SINE Alu -18 295 1 717 102 19 28 chr1 31335719 31335827 -250857837 - AluJo/FLAM SINE Alu -182 130 24 976 166 23 6 chr1 31335967 31336142 -250857522 - AluJ SINE Alu -15 297 120 828 151 32 0 chr1 31336190 31336316 -250857348 - AluJ SINE Alu -176 136 7 370 309 59 13 chr1 31336320 31336472 -250857192 + MIR SINE MIR 103 261 -1 2009 122 0 0 chr1 31336472 31336768 -250856896 + AluSx SINE Alu 1 296 -16 2173 94 0 0 chr1 31336772 31337082 -250856582 - AluSg SINE Alu 0 310 1 342 169 78 0 chr1 31337084 31337161 -250856503 + L1ME4a LINE L1 5706 5788 -333 1771 122 41 24 chr1 31337233 31337527 -250856137 + AluSx SINE Alu 1 299 -13 393 200 0 0 chr1 31337567 31337642 -250856022 + MER116 DNA Mariner 1 75 -5 873 212 0 18 chr1 31337655 31337820 -250855844 + AluJo SINE Alu 121 282 -30 216 86 0 0 chr1 31337826 31337861 -250855803 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1608 167 14 17 chr1 31337866 31338153 -250855511 + AluJo SINE Alu 1 286 -26 206 61 0 30 chr1 31338153 31338186 -250855478 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 1286 151 8 29 chr1 31338216 31338454 -250855210 + AluJb SINE Alu 64 296 -16 302 276 52 17 chr1 31338454 31338570 -250855094 + L1ME4a LINE L1 5948 6067 -54 380 233 8 90 chr1 31340073 31340113 -250853551 + MIR SINE MIR 30 72 -136 2068 92 7 17 chr1 31340113 31340408 -250853256 + AluSp SINE Alu 1 292 -21 380 233 8 90 chr1 31340408 31340500 -250853164 + MIR SINE MIR 72 151 -57 562 170 200 77 chr1 31340501 31340736 -250852928 - L2 LINE L2 0 3313 3050 553 175 16 71 chr1 31340884 31340966 -250852698 - MIR SINE MIR 0 262 188 2064 119 3 3 chr1 31340966 31341269 -250852395 - AluSq SINE Alu -10 303 1 553 175 16 71 chr1 31341269 31341312 -250852352 - MIR SINE MIR -74 188 144 746 189 0 8 chr1 31341333 31341465 -250852199 - FRAM SINE Alu -18 158 28 2114 70 32 0 chr1 31341519 31341825 -250851839 + AluSc SINE Alu 1 309 0 250 299 0 15 chr1 31341825 31341892 -250851772 - MIR SINE MIR -174 88 23 208 196 41 10 chr1 31341980 31342045 -250851619 + MIR SINE MIR 100 166 -96 384 226 121 16 chr1 31342369 31342493 -250851171 - MIR3 SINE MIR -11 197 61 21 0 0 0 chr1 31342790 31342811 -250850853 + GC_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 31342872 31342907 -250850757 + GC_rich Low_complexity Low_complexity 1 35 0 204 306 37 0 chr1 31343076 31343210 -250850454 + (CGG)n Simple_repeat Simple_repeat 2 140 0 22 0 0 0 chr1 31343240 31343262 -250850402 + GC_rich Low_complexity Low_complexity 1 22 0 233 115 0 58 chr1 31344052 31344104 -250849560 + (T)n Simple_repeat Simple_repeat 1 49 0 256 269 67 75 chr1 31344403 31344537 -250849127 + MIR SINE MIR 118 250 -12 2051 104 7 3 chr1 31344707 31344994 -250848670 + AluSx SINE Alu 2 289 -23 1946 125 7 7 chr1 31345148 31345443 -250848221 - AluJo SINE Alu -17 295 1 276 30 0 0 chr1 31345601 31345634 -250848030 + (TG)n Simple_repeat Simple_repeat 2 34 0 2032 122 0 3 chr1 31345635 31345931 -250847733 - AluSc SINE Alu -14 295 1 1408 178 3 53 chr1 31345944 31346247 -250847417 - AluJo SINE Alu -24 288 1 1383 103 0 10 chr1 31346510 31346704 -250846960 - AluSc SINE Alu -117 192 1 683 190 0 70 chr1 31346983 31347125 -250846539 + FLAM_C SINE Alu 2 133 0 1960 123 34 3 chr1 31347814 31348107 -250845557 - AluSx SINE Alu -10 302 1 37 23 0 0 chr1 31348155 31348199 -250845465 + AT_rich Low_complexity Low_complexity 1 44 0 1668 147 32 3 chr1 31348976 31349283 -250844381 - AluJb SINE Alu 0 312 1 25 0 0 0 chr1 31349283 31349308 -250844356 + AT_rich Low_complexity Low_complexity 1 25 0 642 218 0 0 chr1 31349310 31349420 -250844244 - FLAM_A SINE Alu -32 110 1 216 0 0 0 chr1 31350291 31350315 -250843349 + (TA)n Simple_repeat Simple_repeat 1 24 0 2209 103 0 0 chr1 31350318 31350620 -250843044 - AluSg SINE Alu -8 302 1 23 0 0 0 chr1 31350620 31350643 -250843021 + AT_rich Low_complexity Low_complexity 1 23 0 1220 188 52 44 chr1 31350811 31350979 -250842685 - AluJo SINE Alu -38 274 102 2180 101 0 3 chr1 31350979 31351277 -250842387 - AluSg SINE Alu -11 299 3 1220 188 52 44 chr1 31351277 31351380 -250842284 - AluJo SINE Alu -210 102 1 2114 89 62 0 chr1 31351454 31351746 -250841918 - AluSx SINE Alu -1 311 2 1873 216 62 43 chr1 31352207 31352600 -250841064 + MLT1F LTR MaLR 1 408 -134 2043 117 3 3 chr1 31352600 31352899 -250840765 + AluSx SINE Alu 1 299 -13 1873 216 62 43 chr1 31352899 31353037 -250840627 + MLT1F LTR MaLR 408 542 0 1146 277 82 47 chr1 31353043 31353156 -250840508 - L2 LINE L2 0 3313 3205 1608 158 3 58 chr1 31353156 31353317 -250840347 - AluJo SINE Alu -19 293 156 2266 84 3 0 chr1 31353317 31353615 -250840049 - AluSg SINE Alu -11 299 1 1608 158 3 58 chr1 31353615 31353763 -250839901 - AluJo SINE Alu -156 156 1 1146 277 82 47 chr1 31353763 31354228 -250839436 - L2 LINE L2 -108 3205 2715 1094 153 39 20 chr1 31354297 31354500 -250839164 + AluJo SINE Alu 14 220 -92 304 48 0 177 chr1 31354500 31354562 -250839102 + AluSq/x SINE Alu 86 133 -170 * 370 98 0 0 chr1 31354558 31354609 -250839055 - MSTA LTR MaLR -377 51 1 256 207 240 41 chr1 31354609 31354730 -250838934 + MIR SINE MIR 118 262 0 * 319 257 250 20 chr1 31354694 31354842 -250838822 - MIR SINE MIR -33 229 48 277 296 211 0 chr1 31354926 31355078 -250838586 + MIR SINE MIR 73 256 -6 181 318 106 0 chr1 31355873 31355939 -250837725 - MIR SINE MIR -6 256 184 209 231 39 19 chr1 31355993 31356045 -250837619 + CT-rich Low_complexity Low_complexity 4 56 0 610 257 33 70 chr1 31357255 31357496 -250836168 + MIR SINE MIR 31 262 0 2398 50 0 34 chr1 31357560 31357882 -250835782 - AluY SINE Alu 0 311 1 2249 73 3 10 chr1 31357884 31358185 -250835479 - AluSp SINE Alu -13 300 2 1508 160 3 21 chr1 31358214 31358496 -250835168 - L1MB8 LINE L1 0 6178 5902 1684 155 6 50 chr1 31358503 31358820 -250834844 - AluJo SINE Alu -9 303 1 2184 101 0 0 chr1 31358840 31359137 -250834527 - AluSx SINE Alu -15 297 1 450 167 83 0 chr1 31359361 31359469 -250834195 - MER69 DNA AcHobo -53 2473 2357 1185 197 5 0 chr1 31359469 31359687 -250833977 + AluJb SINE Alu 1 219 -93 605 205 57 52 chr1 31359739 31359883 -250833781 - MER69 DNA AcHobo -154 2372 2225 2272 73 0 20 chr1 31359883 31360186 -250833478 - AluY SINE Alu -14 297 1 605 205 57 52 chr1 31360186 31360251 -250833413 - MER69 DNA AcHobo -301 2225 2162 395 114 86 0 chr1 31360251 31360321 -250833343 - MER69 DNA AcHobo -2450 76 1 2132 121 3 0 chr1 31360468 31360774 -250832890 - AluSx SINE Alu -5 307 1 226 348 67 0 chr1 31361684 31361773 -250831891 - MIR SINE MIR -114 148 54 972 197 99 5 chr1 31361908 31362121 -250831543 - L1MD3 LINE L1 -231 7764 7532 4474 199 89 93 chr1 31362174 31362721 -250830943 - L1MC3 LINE L1 -31 7754 7206 319 275 11 11 chr1 31362721 31362812 -250830852 - MLT1F1 LTR MaLR -442 125 35 4474 199 89 93 chr1 31362812 31363019 -250830645 - L1MC3 LINE L1 -579 7206 7000 351 0 0 0 chr1 31363019 31363058 -250830606 + (TG)n Simple_repeat Simple_repeat 2 40 0 4474 199 89 93 chr1 31363058 31363200 -250830464 - L1MC3 LINE L1 -785 7000 6859 1341 192 72 10 chr1 31363200 31363492 -250830172 + AluJb SINE Alu 1 310 -2 1539 155 7 24 chr1 31363501 31363791 -250829873 + AluSx SINE Alu 1 285 -27 270 0 0 0 chr1 31363791 31363821 -250829843 + (CA)n Simple_repeat Simple_repeat 2 31 0 4474 199 89 93 chr1 31363821 31363991 -250829673 - L1MC3 LINE L1 -933 6852 6683 2137 112 0 0 chr1 31363991 31364287 -250829377 + AluSc SINE Alu 1 296 -13 4474 199 89 93 chr1 31364287 31365741 -250827923 - L1MC3 LINE L1 -1102 6683 5158 2149 102 0 3 chr1 31365741 31366045 -250827619 - AluSg SINE Alu -7 303 1 4474 199 89 93 chr1 31366045 31366886 -250826778 - L1MC3 LINE L1 -2627 5158 4315 1394 169 104 0 chr1 31366888 31367148 -250826516 - AluJb SINE Alu -15 297 11 2675 183 8 40 chr1 31367158 31367780 -250825884 - L1MC3 LINE L1 -1823 4323 3722 1962 98 22 0 chr1 31367780 31368095 -250825569 - AluSq SINE Alu 0 321 1 642 232 43 82 chr1 31368157 31368390 -250825274 - MLT1H1 LTR MaLR -5 550 327 2317 71 0 0 chr1 31368723 31369019 -250824645 + AluSx SINE Alu 2 297 -15 1453 172 34 40 chr1 31369448 31369745 -250823919 + AluJb SINE Alu 1 295 -17 2312 74 7 0 chr1 31369966 31370275 -250823389 + AluSp SINE Alu 1 311 -2 253 219 171 0 chr1 31370316 31370421 -250823243 - L1ME4a LINE L1 -34 6087 5965 4780 175 28 16 chr1 31370452 31371299 -250822365 - MER21B LTR ERV1 -6 857 1 6210 99 36 20 chr1 31371575 31371723 -250821941 + L1MA1 LINE L1 5298 5442 -860 2039 113 20 7 chr1 31371723 31372024 -250821640 + AluSx SINE Alu 1 305 -7 6210 99 36 20 chr1 31372024 31372867 -250820797 + L1MA1 LINE L1 5442 6301 -1 2035 95 18 0 chr1 31372887 31373170 -250820494 - AluSx SINE Alu -7 305 18 1807 157 17 7 chr1 31373177 31373464 -250820200 + AluJb SINE Alu 19 308 -4 628 126 0 0 chr1 31374551 31374638 -250819026 - AluSg/x SINE Alu -15 294 208 901 73 0 0 chr1 31374650 31374759 -250818905 - AluY SINE Alu -202 109 1 2006 93 30 0 chr1 31375488 31375803 -250817861 + AluSc SINE Alu 1 323 0 1769 146 43 0 chr1 31375897 31376177 -250817487 + AluSx SINE Alu 1 292 -20 2236 56 49 26 chr1 31376584 31376888 -250816776 + AluY SINE Alu 1 311 0 2273 92 0 7 chr1 31377020 31377312 -250816352 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr1 31377492 31377514 -250816150 + AT_rich Low_complexity Low_complexity 1 22 0 1656 182 18 3 chr1 31377514 31377800 -250815864 + AluJo SINE Alu 1 290 -22 649 236 48 125 chr1 31377847 31377940 -250815724 - L1ME4a LINE L1 -201 5969 5870 198 0 0 0 chr1 31377940 31377962 -250815702 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2224 111 0 0 chr1 31377965 31378254 -250815410 - AluSg SINE Alu -21 289 1 649 236 48 125 chr1 31378254 31378571 -250815093 - L1ME4a LINE L1 -302 5868 5587 288 279 72 27 chr1 31378614 31378725 -250814939 - MIR SINE MIR -126 136 21 2162 106 7 3 chr1 31379194 31379487 -250814177 - AluSq SINE Alu -19 294 1 315 0 0 0 chr1 31379714 31379749 -250813915 + (CA)n Simple_repeat Simple_repeat 2 36 0 1866 136 0 79 chr1 31379924 31380254 -250813410 + AluJb SINE Alu 1 304 -8 2240 98 0 13 chr1 31380598 31380905 -250812759 + AluSg SINE Alu 1 303 -7 1295 79 18 0 chr1 31381217 31381381 -250812283 - AluSq SINE Alu -146 167 1 981 197 10 56 chr1 31381381 31381685 -250811979 - L1MC5 LINE L1 -325 7636 7347 300 200 0 0 chr1 31381879 31381934 -250811730 + AluJ/FRAM SINE Alu 228 282 -20 180 125 0 0 chr1 31381937 31381969 -250811695 + (CATG)n Simple_repeat Simple_repeat 2 33 0 1010 202 34 0 chr1 31382157 31382335 -250811329 - MER5A DNA MER1_type -4 185 2 231 277 294 0 chr1 31382356 31382475 -250811189 - MER5B DNA MER1_type -24 154 1 2275 104 0 13 chr1 31383689 31383996 -250809668 - AluSc SINE Alu -6 303 1 271 272 100 56 chr1 31385061 31385241 -250808423 - L2 LINE L2 -6 3307 3120 2016 150 0 0 chr1 31385766 31386053 -250807611 - AluSx SINE Alu -21 291 5 29 21 0 21 chr1 31386314 31386341 -250807323 + AT_rich Low_complexity Low_complexity 1 28 -18 890 138 0 8 chr1 31386341 31386464 -250807200 - FLAM_C SINE Alu -7 126 5 29 21 0 21 chr1 31386464 31386483 -250807181 + AT_rich Low_complexity Low_complexity 28 46 0 1473 173 4 0 chr1 31386579 31386810 -250806854 + AluJb SINE Alu 61 292 -20 2124 119 3 25 chr1 31386882 31387201 -250806463 + AluJb SINE Alu 1 312 0 2201 128 3 0 chr1 31387565 31387870 -250805794 - AluSx SINE Alu -6 306 1 807 119 0 48 chr1 31388196 31388322 -250805342 - AluSq/x SINE Alu -180 133 14 1878 128 6 42 chr1 31388341 31388653 -250805011 - AluJb SINE Alu 0 312 12 1464 147 67 70 chr1 31388799 31389099 -250804565 + AluJb SINE Alu 1 299 -13 2405 88 0 3 chr1 31389104 31389409 -250804255 + AluSq SINE Alu 1 304 -9 262 299 133 45 chr1 31389818 31389942 -250803722 + MIR SINE MIR 22 151 -92 562 103 0 0 chr1 31390391 31390414 -250803250 + MADE1 DNA Mariner 2 24 -56 2353 82 0 10 chr1 31390414 31390717 -250802947 - AluSq SINE Alu -13 300 1 562 103 0 0 chr1 31390717 31390771 -250802893 + MADE1 DNA Mariner 23 79 -1 1103 157 32 19 chr1 31390771 31390987 -250802677 - L1MB7 LINE L1 -26 6158 5940 444 19 0 0 chr1 31391698 31391751 -250801913 + (TG)n Simple_repeat Simple_repeat 1 53 0 206 368 0 15 chr1 31391824 31391892 -250801772 + MIR SINE MIR 19 85 -123 2068 109 14 17 chr1 31392517 31392811 -250800853 + AluSx SINE Alu 1 293 -19 1113 103 0 39 chr1 31392811 31393006 -250800658 + AluSg/x SINE Alu 134 322 0 205 343 172 54 chr1 31393185 31393482 -250800182 + L2 LINE L2 2937 3268 -4 2330 92 0 10 chr1 31394260 31394566 -250799098 + AluSq SINE Alu 1 303 -10 1262 259 150 30 chr1 31394776 31395327 -250798337 - L2 LINE L2 0 3313 2661 1588 86 5 5 chr1 31395484 31395693 -250797971 + AluSp SINE Alu 95 303 -10 607 153 34 17 chr1 31396366 31396484 -250797180 + AluSp SINE Alu 2 121 -192 1132 46 0 0 chr1 31396633 31396763 -250796901 + AluY SINE Alu 5 134 -177 2367 84 0 7 chr1 31396763 31397072 -250796592 + AluY SINE Alu 1 307 -4 2227 104 3 0 chr1 31398006 31398295 -250795369 - AluSx SINE Alu -22 290 1 2370 88 7 3 chr1 31398324 31398631 -250795033 - AluSx SINE Alu -2 310 3 1548 136 19 108 chr1 31399037 31399361 -250794303 - AluJb SINE Alu -17 295 1 1722 172 0 17 chr1 31399737 31400028 -250793636 - AluJo SINE Alu -18 294 9 1826 178 0 16 chr1 31400518 31400827 -250792837 - AluJo SINE Alu -8 304 1 895 324 147 19 chr1 31400858 31401342 -250792322 - L3 LINE CR1 -11 1566 1021 239 302 115 22 chr1 31401431 31401570 -250792094 - L3 LINE CR1 -558 1019 868 415 326 112 25 chr1 31401616 31401892 -250791772 - L2 LINE L2 -699 2615 2316 2385 79 7 0 chr1 31401922 31402225 -250791439 - AluSx SINE Alu -7 305 1 1084 98 0 0 chr1 31402231 31402364 -250791300 - AluSq/x SINE Alu -180 133 1 2207 56 95 0 chr1 31402819 31403103 -250790561 + AluY SINE Alu 1 311 0 1887 169 3 0 chr1 31403492 31403788 -250789876 - AluJo SINE Alu -15 297 1 2073 142 0 0 chr1 31403992 31404287 -250789377 - AluSx SINE Alu -16 296 2 532 150 0 0 chr1 31405413 31405493 -250788171 - Ricksha DNA DNA 0 2854 2775 * 10692 149 36 14 chr1 31405426 31407195 -250786469 + Ricksha DNA DNA 91 1898 -1348 1718 150 0 18 chr1 31407212 31407492 -250786172 + AluJb SINE Alu 28 302 -10 4517 114 16 10 chr1 31407697 31408387 -250785277 + L1P LINE L1 4075 4768 -1378 286 270 36 44 chr1 31408430 31408584 -250785080 - MIR SINE MIR -65 143 26 1684 98 47 4 chr1 31409489 31409744 -250783920 + L1MA2 LINE L1 6039 6304 0 201 211 0 0 chr1 31412337 31412375 -250781289 - L2 LINE L2 -20 3293 3256 713 225 7 0 chr1 31412427 31412569 -250781095 - MIR SINE MIR -23 239 97 304 287 93 9 chr1 31413435 31413543 -250780121 + MIR SINE MIR 31 147 -61 1441 90 0 0 chr1 31413769 31413947 -250779717 + AluSq SINE Alu 1 178 -135 302 0 0 26 chr1 31414362 31414401 -250779263 + (TG)n Simple_repeat Simple_repeat 1 38 0 735 256 92 0 chr1 31415262 31415457 -250778207 + MIR SINE MIR 40 252 -10 274 313 40 20 chr1 31415879 31415978 -250777686 + L2 LINE L2 3203 3303 -10 207 188 0 0 chr1 31415987 31416035 -250777629 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 23 78 0 0 chr1 31416577 31416628 -250777036 + AT_rich Low_complexity Low_complexity 1 51 0 2447 68 7 10 chr1 31417534 31417841 -250775823 + AluSx SINE Alu 1 306 -6 255 273 50 30 chr1 31417847 31417946 -250775718 + MIR3 SINE MIR 55 155 -53 1510 152 5 0 chr1 31419962 31420186 -250773478 - AluSx SINE Alu -87 225 1 543 292 6 0 chr1 31420248 31420416 -250773248 - L1MC4 LINE L1 -1 8041 7873 2231 112 0 0 chr1 31420456 31420752 -250772912 - AluSq SINE Alu -17 296 1 1438 98 0 29 chr1 31421037 31421241 -250772423 - Charlie3 DNA MER1_type -4 2706 2509 264 211 122 33 chr1 31422220 31422310 -250771354 + MIR SINE MIR 144 241 -21 2555 14 0 0 chr1 31424685 31424963 -250768701 - AluYa5 SINE Alu 0 311 34 330 87 0 0 chr1 31426822 31426868 -250766796 + (GA)n Simple_repeat Simple_repeat 1 46 0 332 22 0 22 chr1 31427849 31427895 -250765769 + (TG)n Simple_repeat Simple_repeat 2 46 0 187 309 144 0 chr1 31428280 31428377 -250765287 - MIR SINE MIR -6 256 146 2314 73 0 20 chr1 31428490 31428791 -250764873 + AluSx SINE Alu 1 295 -17 506 303 62 0 chr1 31428793 31428971 -250764693 - MIR SINE MIR -71 191 3 2525 140 3 5 chr1 31429595 31429980 -250763684 - Tigger2a DNA MER2_type -49 385 2 287 267 193 27 chr1 31430196 31430346 -250763318 - MIR SINE MIR -62 200 26 395 316 29 35 chr1 31430470 31430641 -250763023 - MIR3 SINE MIR -9 199 30 243 0 0 0 chr1 31430684 31430711 -250762953 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 224 0 0 chr1 31431315 31431364 -250762300 + (TG)n Simple_repeat Simple_repeat 2 50 0 1755 100 116 4 chr1 31432006 31432265 -250761399 - AluSx SINE Alu -12 300 13 23 0 0 0 chr1 31432382 31432405 -250761259 + AT_rich Low_complexity Low_complexity 1 23 0 222 254 34 0 chr1 31432429 31432488 -250761176 + (CATA)n Simple_repeat Simple_repeat 1 61 0 344 363 22 7 chr1 31432819 31432954 -250760710 + L2 LINE L2 2954 3090 -182 256 228 89 44 chr1 31433349 31433493 -250760171 + MIR SINE MIR 34 192 -64 385 248 9 44 chr1 31434069 31434151 -250759513 + MIR3 SINE MIR 76 154 -54 1621 194 3 3 chr1 31434151 31434445 -250759219 - AluJo SINE Alu -18 294 1 385 248 9 44 chr1 31434445 31434475 -250759189 + MIR3 SINE MIR 154 184 -24 411 21 0 0 chr1 31434776 31434824 -250758840 + (CA)n Simple_repeat Simple_repeat 2 49 0 319 157 43 0 chr1 31435377 31435444 -250758220 - AluJ/FLAM SINE Alu -245 57 1 597 183 44 15 chr1 31435533 31435670 -250757994 - MIR SINE MIR -2 260 120 751 168 0 0 chr1 31436570 31436677 -250756987 + FLAM_A SINE Alu 3 109 -33 2180 113 0 0 chr1 31436759 31437051 -250756613 + AluSx SINE Alu 1 292 -20 2160 96 11 0 chr1 31437557 31437839 -250755825 - AluSq SINE Alu -28 285 1 943 112 0 8 chr1 31439038 31439172 -250754492 - FLAM_C SINE Alu 0 133 1 3163 9 0 0 chr1 31439637 31439986 -250753678 + L1HS LINE L1 5803 6151 -4 25 0 0 0 chr1 31439986 31440011 -250753653 + AT_rich Low_complexity Low_complexity 1 25 0 714 101 10 0 chr1 31440011 31440110 -250753554 - HY3 scRNA scRNA -1 100 1 528 239 117 119 chr1 31440169 31440554 -250753110 + L2 LINE L2 2915 3298 -15 2304 98 3 0 chr1 31440556 31440852 -250752812 + AluSx SINE Alu 1 297 -15 1995 164 0 3 chr1 31440861 31441160 -250752504 + AluJb SINE Alu 1 298 -14 515 217 52 9 chr1 31441273 31441388 -250752276 - L2 LINE L2 0 3313 3194 1927 195 121 104 chr1 31441453 31442308 -250751356 + LTR28 LTR ERV1 1 1020 0 449 211 78 0 chr1 31442318 31442408 -250751256 - MER5A DNA MER1_type -84 105 9 1890 126 23 7 chr1 31442793 31443103 -250750561 - Ricksha DNA DNA -8 3243 2929 486 117 65 13 chr1 31443101 31443178 -250750486 - Ricksha DNA DNA -379 2475 2395 * 3119 26 3 0 chr1 31443579 31443925 -250749739 + L1PA4 LINE L1 5806 6152 -3 195 23 68 45 chr1 31443932 31443976 -250749688 + A-rich Low_complexity Low_complexity 3 47 0 4526 128 27 13 chr1 31443976 31444721 -250748943 - Ricksha DNA DNA -445 2806 1965 298 282 65 24 chr1 31445253 31445377 -250748287 - MER5B DNA MER1_type 0 178 50 616 113 0 10 chr1 31445779 31445876 -250747788 + L1MB8 LINE L1 6083 6178 0 218 342 44 9 chr1 31445907 31446021 -250747643 - MIR SINE MIR -108 154 37 2336 82 3 3 chr1 31446532 31446824 -250746840 - AluY SINE Alu -19 292 1 2441 84 7 0 chr1 31446938 31447248 -250746416 - AluSx SINE Alu 0 312 1 2026 139 150 11 chr1 31448076 31448443 -250745221 + MSTA LTR MaLR 10 427 -1 1882 121 4 0 chr1 31449432 31449689 -250743975 + AluSq SINE Alu 1 258 -55 2135 99 0 3 chr1 31450341 31450623 -250743041 - AluSg1 SINE Alu -6 303 23 31 26 0 0 chr1 31450790 31450828 -250742836 + AT_rich Low_complexity Low_complexity 1 38 0 1261 209 67 28 chr1 31450940 31451222 -250742442 - AluJo SINE Alu -19 293 1 318 278 0 37 chr1 31451333 31451441 -250742223 - MIR SINE MIR -1 261 158 6173 162 80 66 chr1 31451442 31451857 -250741807 + Charlie1a DNA MER1_type 1 409 -2352 2390 86 0 0 chr1 31451857 31452159 -250741505 - AluY SINE Alu -7 304 3 6173 162 80 66 chr1 31452159 31452720 -250740944 + Charlie1a DNA MER1_type 409 961 -1800 2328 84 0 7 chr1 31452720 31453017 -250740647 + AluSc SINE Alu 1 295 -14 6173 162 80 66 chr1 31453017 31453277 -250740387 + Charlie1a DNA MER1_type 961 1216 -1545 2158 131 0 0 chr1 31453277 31453574 -250740090 - AluSq SINE Alu -16 297 1 6173 162 80 66 chr1 31453574 31453685 -250739979 + Charlie1a DNA MER1_type 1216 1324 -1437 2354 101 3 0 chr1 31453685 31453991 -250739673 + AluSp SINE Alu 1 307 -6 6173 162 80 66 chr1 31453991 31454075 -250739589 + Charlie1a DNA MER1_type 1324 1455 0 649 313 85 0 chr1 31454083 31454307 -250739357 + MIR SINE MIR 2 244 -18 2637 55 7 0 chr1 31454334 31454642 -250739022 + AluY SINE Alu 1 310 -1 24 32 0 0 chr1 31454891 31454922 -250738742 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 31455522 31455546 -250738118 + AT_rich Low_complexity Low_complexity 1 24 0 922 152 88 0 chr1 31455670 31455841 -250737823 - AluSx SINE Alu -126 186 1 33 0 0 0 chr1 31456033 31456066 -250737598 + AT_rich Low_complexity Low_complexity 1 33 0 2140 128 0 3 chr1 31456497 31456794 -250736870 + AluSq SINE Alu 1 296 -17 1810 168 3 20 chr1 31456808 31457105 -250736559 + AluJb SINE Alu 1 292 -20 2179 103 7 3 chr1 31457507 31457807 -250735857 - AluY SINE Alu -10 301 1 249 57 0 0 chr1 31457967 31458002 -250735662 + (TC)n Simple_repeat Simple_repeat 2 36 0 2147 102 0 43 chr1 31458217 31458541 -250735123 + AluSx SINE Alu 1 310 -2 2212 100 3 52 chr1 31459101 31459430 -250734234 - AluSp SINE Alu 0 313 1 225 158 53 0 chr1 31459635 31459673 -250733991 - Tigger3(Golem) DNA MER2_type -3 3026 2987 1099 154 6 0 chr1 31459673 31459842 -250733822 - AluJo SINE Alu -142 170 1 878 212 7 0 chr1 31459977 31460128 -250733536 + FRAM SINE Alu 1 152 -14 24 53 0 0 chr1 31460128 31460166 -250733498 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 31460312 31460336 -250733328 + AT_rich Low_complexity Low_complexity 1 24 0 2305 112 0 0 chr1 31460358 31460671 -250732993 - AluSq SINE Alu 0 313 1 337 277 50 57 chr1 31460698 31460857 -250732807 + HAL1b LINE L1 1191 1348 0 1658 185 0 20 chr1 31461033 31461330 -250732334 - AluJo SINE Alu -21 291 1 267 117 34 6 chr1 31461460 31461506 -250732158 + MIR SINE MIR 101 201 -7 1634 164 173 21 chr1 31461692 31462119 -250731545 + LTR54B LTR ERV1 1 492 -6 1508 183 56 14 chr1 31462336 31462620 -250731044 - AluJb SINE Alu -16 296 1 355 273 312 7 chr1 31462644 31462798 -250730866 - MIR SINE MIR -1 261 61 228 220 0 68 chr1 31462821 31462880 -250730784 - L2 LINE L2 -2 3270 3216 1481 205 70 62 chr1 31462925 31463408 -250730256 + HAL1 LINE L1 1354 1840 -667 2556 62 0 0 chr1 31464410 31464716 -250728948 - AluY SINE Alu -5 306 1 21 0 0 0 chr1 31464845 31464866 -250728798 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 31465250 31465272 -250728392 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 31465394 31465414 -250728250 + (A)n Simple_repeat Simple_repeat 1 20 0 1744 164 3 11 chr1 31465420 31465707 -250727957 + AluJb SINE Alu 1 285 -27 762 115 0 0 chr1 31465707 31465803 -250727861 + AluSq SINE Alu 100 195 -118 236 200 0 0 chr1 31465803 31465848 -250727816 - Alu SINE Alu -136 166 122 185 343 0 0 chr1 31465850 31465923 -250727741 - MIR3 SINE MIR -25 183 111 757 224 132 26 chr1 31467194 31467422 -250726242 + MIR SINE MIR 8 259 -3 1693 113 0 17 chr1 31467524 31467764 -250725900 - AluSg/x SINE Alu -4 308 73 2281 87 6 34 chr1 31467764 31468084 -250725580 - AluSq SINE Alu 0 313 1 262 286 0 0 chr1 31468099 31468155 -250725509 + L2 LINE L2 3217 3272 0 1984 136 7 13 chr1 31468807 31469115 -250724549 - AluJb SINE Alu -5 307 2 206 308 0 77 chr1 31469140 31469231 -250724433 - MIR SINE MIR -82 126 43 1006 182 62 6 chr1 31469266 31469442 -250724222 - MER5A DNA MER1_type -2 187 2 425 333 49 19 chr1 31469451 31469613 -250724051 - MER5A DNA MER1_type 0 189 23 1264 187 0 18 chr1 31469753 31469972 -250723692 - AluJb SINE Alu -97 215 1 416 286 130 0 chr1 31469975 31470160 -250723504 - L1M4 LINE L1 -2727 3419 3211 249 57 0 0 chr1 31470185 31470220 -250723444 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2153 107 0 14 chr1 31470220 31470511 -250723153 - AluSq SINE Alu -26 287 1 253 122 0 20 chr1 31470511 31470560 -250723104 - L1MA7 LINE L1 -14 6277 6230 * 278 138 0 17 chr1 31470549 31470607 -250723057 - L1M4 LINE L1 -2918 3228 3172 2419 64 17 3 chr1 31470636 31470934 -250722730 - AluSp SINE Alu -11 302 1 238 225 81 20 chr1 31470971 31471067 -250722597 - MIR SINE MIR -82 126 74 478 238 0 10 chr1 31471084 31471185 -250722479 + LTR28 LTR ERV1 921 1020 0 1890 126 23 7 chr1 31471794 31472104 -250721560 - Ricksha DNA DNA -8 3246 2932 486 117 65 13 chr1 31472102 31472179 -250721485 - Ricksha DNA DNA -379 2475 2395 * 3068 29 3 3 chr1 31472580 31472927 -250720737 + L1PA4 LINE L1 5806 6152 -3 190 26 79 26 chr1 31472934 31472972 -250720692 + A-rich Low_complexity Low_complexity 3 42 0 629 89 0 0 chr1 31473073 31473152 -250720512 - AluS SINE Alu -233 80 2 2007 121 7 0 chr1 31473162 31473497 -250720167 - AluSx SINE Alu 0 337 1 2005 102 4 18 chr1 31473585 31473860 -250719804 - AluY SINE Alu -40 271 1 1849 123 43 0 chr1 31473981 31474257 -250719407 - AluSx SINE Alu -19 293 6 430 333 49 14 chr1 31474284 31474428 -250719236 - L2 LINE L2 -5 3267 3119 496 82 0 0 chr1 31474467 31474528 -250719136 - AluSx SINE Alu -16 293 233 1338 134 16 0 chr1 31474528 31474714 -250718950 - AluSx SINE Alu -123 189 1 647 202 60 44 chr1 31474742 31474925 -250718739 - L1MC5 LINE L1 -44 7917 7732 363 368 37 37 chr1 31475430 31475593 -250718071 - L2 LINE L2 -6 3266 3104 302 180 83 36 chr1 31475740 31475846 -250717818 + MIR SINE MIR 42 146 -62 2074 142 0 3 chr1 31476410 31476706 -250716958 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 31476720 31476832 -250716832 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 31476955 31477090 -250716574 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 31477147 31477460 -250716204 - AluSx SINE Alu -2 310 1 1709 92 40 7 chr1 31477892 31478207 -250715457 + AluSg1 SINE Alu 1 324 0 346 205 134 27 chr1 31479158 31479270 -250714394 + L1ME4a LINE L1 5995 6118 -3 790 189 12 27 chr1 31479721 31479904 -250713760 + L1MC4 LINE L1 6433 6620 -1396 204 275 217 8 chr1 31529995 31530115 -250663549 - L2 LINE L2 -803 2511 2367 288 278 86 56 chr1 31530252 31530414 -250663250 - MIR SINE MIR -9 253 87 2131 108 0 17 chr1 31530514 31530810 -250662854 - AluSg SINE Alu -13 297 7 340 198 66 22 chr1 31530843 31530934 -250662730 - MER103 DNA DNA -19 147 53 2192 91 0 0 chr1 31531161 31531436 -250662228 - AluSx SINE Alu -37 275 1 415 317 62 65 chr1 31531733 31532055 -250661609 - L2 LINE L2 -51 3221 2901 1820 132 64 0 chr1 31532383 31532679 -250660985 - AluSx SINE Alu 0 313 1 1676 163 71 0 chr1 31532681 31532963 -250660701 - AluJb SINE Alu -8 304 3 358 83 0 0 chr1 31533830 31533878 -250659786 + Alu SINE Alu 1 48 -253 306 311 34 68 chr1 31534258 31534435 -250659229 + MIR3 SINE MIR 10 180 -28 1343 105 0 0 chr1 31534943 31535115 -250658549 + AluSg SINE Alu 1 172 -138 548 260 125 10 chr1 31535170 31535378 -250658286 - MIR SINE MIR 0 262 31 825 181 104 14 chr1 31536001 31536241 -250657423 - MER46C DNA MER2_type -1 337 17 226 303 26 26 chr1 31536323 31536399 -250657265 + L2 LINE L2 3127 3202 -70 2042 128 0 36 chr1 31536461 31536767 -250656897 + AluSx SINE Alu 1 295 -17 472 273 209 27 chr1 31537003 31537223 -250656441 + MIR SINE MIR 2 261 -1 180 273 136 0 chr1 31537340 31537406 -250656258 - L2 LINE L2 -8 3264 3190 988 196 18 0 chr1 31537410 31537578 -250656086 + FAM SINE Alu 4 174 -1 187 327 71 53 chr1 31537707 31537820 -250655844 - L2 LINE L2 -215 3057 2943 199 248 210 37 chr1 31537930 31538144 -250655520 - L2 LINE L2 -803 2511 2261 311 272 86 56 chr1 31538187 31538349 -250655315 - MIR SINE MIR -9 253 87 2306 93 0 17 chr1 31538448 31538750 -250654914 - AluSg SINE Alu -13 297 1 425 236 55 16 chr1 31538777 31538904 -250654760 - MER103 DNA DNA -19 147 16 270 270 80 30 chr1 31541055 31541155 -250652509 - MIR SINE MIR -56 152 48 1916 121 7 0 chr1 31541559 31541831 -250651833 + AluSx SINE Alu 33 306 -6 435 260 0 10 chr1 31541843 31541943 -250651721 - MIR SINE MIR -71 137 39 * 520 268 118 0 chr1 31541938 31542140 -250651524 + MIR SINE MIR 29 256 -6 2332 97 6 6 chr1 31542194 31542505 -250651159 + AluSq SINE Alu 1 311 -2 789 126 54 0 chr1 31542505 31542616 -250651048 + AluSq SINE Alu 134 250 -63 186 133 0 0 chr1 31542616 31542646 -250651018 + (A)n Simple_repeat Simple_repeat 1 30 0 1297 210 32 4 chr1 31542679 31542931 -250650733 - AluJb SINE Alu -19 293 35 1010 208 102 53 chr1 31543101 31543423 -250650241 - L2 LINE L2 -1 3312 2975 2073 86 32 7 chr1 31543535 31543836 -250649828 + AluSp SINE Alu 2 309 0 539 143 0 22 chr1 31543882 31543973 -250649691 + AluJo SINE Alu 29 117 -195 185 166 69 0 chr1 31543975 31544120 -250649544 + (TA)n Simple_repeat Simple_repeat 2 156 0 903 198 18 0 chr1 31544120 31544287 -250649377 + AluJo SINE Alu 124 293 -19 2273 112 3 0 chr1 31544290 31544602 -250649062 + AluSq SINE Alu 1 313 0 428 331 18 25 chr1 31544605 31544768 -250648896 + MIR SINE MIR 50 211 -51 1153 111 0 0 chr1 31544864 31545047 -250648617 + AluSg/x SINE Alu 130 312 0 1034 139 12 0 chr1 31545098 31545263 -250648401 + FRAM SINE Alu 1 162 -14 417 240 130 7 chr1 31545524 31545670 -250647994 + L1ME4a LINE L1 5731 5894 -227 185 0 40 0 chr1 31545928 31545953 -250647711 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1869 118 7 61 chr1 31545955 31546116 -250647548 - AluSx SINE Alu -30 282 143 2385 92 0 0 chr1 31546116 31546420 -250647244 - AluSq SINE Alu -9 304 1 1869 118 7 61 chr1 31546420 31546555 -250647109 - AluSx SINE Alu -169 143 2 436 239 60 26 chr1 31546731 31546848 -250646816 + MIR SINE MIR 21 141 -121 2152 117 3 0 chr1 31547016 31547314 -250646350 - AluSx SINE Alu -13 299 1 856 219 82 26 chr1 31547341 31547574 -250646090 + MIR SINE MIR 1 246 -16 2159 193 64 41 chr1 31547749 31547781 -250645883 - L1ME2 LINE L1 -10 6154 6124 1709 164 4 7 chr1 31547781 31547927 -250645737 - AluJo SINE Alu -31 281 135 2185 104 0 26 chr1 31547927 31548235 -250645429 - AluSg SINE Alu -10 300 1 1709 164 4 7 chr1 31548235 31548369 -250645295 - AluJo SINE Alu -177 135 2 2159 193 64 41 chr1 31548369 31548583 -250645081 - L1ME2 LINE L1 -40 6124 5916 2104 124 0 10 chr1 31548583 31548881 -250644783 - AluSq SINE Alu -14 299 5 2159 193 64 41 chr1 31548881 31549091 -250644573 - L1ME2 LINE L1 -248 5916 5681 2063 124 7 10 chr1 31549091 31549398 -250644266 - AluSx SINE Alu -6 306 1 2159 193 64 41 chr1 31549398 31549474 -250644190 - L1ME2 LINE L1 -483 5681 5608 629 98 0 24 chr1 31549788 31549905 -250643759 - AluSp/q SINE Alu 0 318 204 2263 120 3 0 chr1 31549917 31550226 -250643438 - AluSg SINE Alu 0 310 1 587 270 114 23 chr1 31550352 31550615 -250643049 + LTR28 LTR ERV1 734 1020 0 449 211 78 0 chr1 31550625 31550715 -250642949 - MER5A DNA MER1_type -84 105 9 1890 126 23 7 chr1 31551099 31551409 -250642255 - Ricksha DNA DNA -8 3246 2932 486 117 65 13 chr1 31551407 31551484 -250642180 - Ricksha DNA DNA -379 2475 2395 * 3119 26 3 0 chr1 31551885 31552231 -250641433 + L1PA4 LINE L1 5806 6152 -3 195 23 68 45 chr1 31552238 31552282 -250641382 + A-rich Low_complexity Low_complexity 3 47 0 1455 116 40 33 chr1 31552282 31552585 -250641079 - Ricksha DNA DNA -445 2806 2415 1399 204 0 15 chr1 31552722 31552982 -250640682 - AluJo SINE Alu -56 256 1 416 286 130 0 chr1 31552985 31553170 -250640494 - L1M4 LINE L1 -2727 3419 3211 282 29 0 0 chr1 31553195 31553230 -250640434 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2061 105 18 14 chr1 31553230 31553516 -250640148 - AluSq SINE Alu -26 287 1 253 122 0 20 chr1 31553516 31553565 -250640099 - L1MA7 LINE L1 -14 6277 6230 * 278 138 0 17 chr1 31553554 31553612 -250640052 - L1M4 LINE L1 -2918 3228 3172 2481 60 13 0 chr1 31553641 31553939 -250639725 - AluSp SINE Alu -11 302 1 281 266 120 63 chr1 31553976 31554134 -250639530 - MIR3 SINE MIR -82 126 10 294 163 0 0 chr1 31554170 31554219 -250639445 - MIR SINE MIR -2 260 212 298 282 65 24 chr1 31554832 31554956 -250638708 - MER5B DNA MER1_type 0 178 50 616 113 0 10 chr1 31555358 31555455 -250638209 + L1MB8 LINE L1 6083 6178 0 218 342 44 9 chr1 31555486 31555600 -250638064 - MIR SINE MIR -108 154 37 2336 82 3 3 chr1 31556111 31556403 -250637261 - AluY SINE Alu -19 292 1 2382 88 7 0 chr1 31556517 31556823 -250636841 - AluSx SINE Alu -4 308 1 347 120 0 0 chr1 31557198 31557248 -250636416 + Alu SINE Alu 245 294 -6 592 218 23 45 chr1 31557571 31557704 -250635960 - MER20 DNA MER1_type -89 130 1 2575 59 0 0 chr1 31558888 31559194 -250634470 - AluY SINE Alu -5 306 1 21 0 0 0 chr1 31559323 31559344 -250634320 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 31559728 31559750 -250633914 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 31559872 31559897 -250633767 + (A)n Simple_repeat Simple_repeat 1 25 0 1744 164 3 11 chr1 31559903 31560190 -250633474 + AluJb SINE Alu 1 285 -27 1487 126 0 0 chr1 31560190 31560396 -250633268 + AluSg/x SINE Alu 97 303 -7 2913 6 0 0 chr1 31561002 31561340 -250632324 + AluYa5 SINE Alu 1 338 0 1947 98 77 18 chr1 31561352 31561638 -250632026 + AluSg SINE Alu 4 306 -4 2356 47 7 0 chr1 31561639 31561972 -250631692 + AluY SINE Alu 1 335 0 706 122 10 0 chr1 31562100 31562198 -250631466 - AluSg SINE Alu -209 101 3 2355 36 47 0 chr1 31562503 31562782 -250630882 - AluY SINE Alu -19 292 1 425 333 49 19 chr1 31562990 31563152 -250630512 + MER5A DNA MER1_type 23 189 0 1006 182 62 6 chr1 31563161 31563337 -250630327 + MER5A DNA MER1_type 2 187 -2 206 308 0 77 chr1 31563372 31563463 -250630201 + MIR SINE MIR 43 126 -82 1993 136 7 13 chr1 31563488 31563797 -250629867 + AluJb SINE Alu 2 308 -4 21 36 0 0 chr1 31564289 31564317 -250629347 + AT_rich Low_complexity Low_complexity 1 28 0 216 271 187 0 chr1 31565531 31565638 -250628026 + MIR SINE MIR 66 192 -70 364 253 95 0 chr1 31565878 31565973 -250627691 - L2 LINE L2 -2 3311 3208 306 241 112 9 chr1 31566116 31566232 -250627432 + MIR SINE MIR 50 177 -85 1530 84 0 110 chr1 31566435 31566635 -250627029 + L1MA8 LINE L1 6046 6210 -81 2378 93 0 16 chr1 31566635 31566948 -250626716 - AluSg SINE Alu -1 309 2 1530 84 0 110 chr1 31566948 31567020 -250626644 + L1MA8 LINE L1 6210 6288 -3 792 197 95 20 chr1 31567515 31567662 -250626002 - AluJb SINE Alu -153 159 2 355 273 312 7 chr1 31567687 31567841 -250625823 - MIR SINE MIR -1 261 61 228 220 0 68 chr1 31567864 31567923 -250625741 - L2 LINE L2 -2 3270 3216 1568 206 78 57 chr1 31567968 31568479 -250625185 + HAL1 LINE L1 1354 1875 -632 2008 124 28 0 chr1 31568505 31568788 -250624876 - AluSx SINE Alu -21 291 1 33 0 0 0 chr1 31568980 31569013 -250624651 + AT_rich Low_complexity Low_complexity 1 33 0 2140 128 0 3 chr1 31569444 31569741 -250623923 + AluSq SINE Alu 1 296 -17 1770 175 3 20 chr1 31569755 31570052 -250623612 + AluJb SINE Alu 1 292 -20 2289 87 7 0 chr1 31570454 31570753 -250622911 - AluY SINE Alu -10 301 1 838 211 29 5 chr1 31570895 31571099 -250622565 - L1MA7 LINE L1 -4 6287 6079 380 350 169 17 chr1 31571473 31571833 -250621831 + L2 LINE L2 2822 3236 -36 32 67 0 0 chr1 31572093 31572153 -250621511 + AT_rich Low_complexity Low_complexity 1 60 0 1640 163 9 77 chr1 31572661 31572986 -250620678 - AluJo SINE Alu -9 303 1 330 274 66 19 chr1 31573636 31573742 -250619922 + MIR SINE MIR 57 167 -95 863 218 20 5 chr1 31574059 31574256 -250619408 + MER46C DNA MER2_type 92 291 -47 2225 116 0 0 chr1 31574258 31574561 -250619103 - AluSx SINE Alu -9 303 1 751 168 0 0 chr1 31574643 31574750 -250618914 - FLAM_A SINE Alu -33 109 3 596 210 57 13 chr1 31575630 31575787 -250617877 + MIR SINE MIR 97 260 -2 2351 92 0 0 chr1 31575876 31576171 -250617493 + AluSg SINE Alu 1 295 -15 2135 99 0 3 chr1 31576974 31577256 -250616408 - AluSg1 SINE Alu -6 303 23 31 26 0 0 chr1 31577423 31577461 -250616203 + AT_rich Low_complexity Low_complexity 1 38 0 1354 199 68 25 chr1 31577573 31577854 -250615810 - AluJo SINE Alu -19 293 1 318 278 0 37 chr1 31577965 31578073 -250615591 - MIR SINE MIR -1 261 158 5463 169 91 47 chr1 31578074 31578489 -250615175 + Charlie1a DNA MER1_type 1 396 -2365 2434 80 0 0 chr1 31578489 31578791 -250614873 - AluY SINE Alu -7 304 3 5463 169 91 47 chr1 31578791 31579352 -250614312 + Charlie1a DNA MER1_type 396 1046 -1715 2386 84 0 3 chr1 31579352 31579649 -250614015 + AluSg SINE Alu 1 296 -14 5463 169 91 47 chr1 31579649 31579909 -250613755 + Charlie1a DNA MER1_type 1046 1293 -162 1339 145 0 0 chr1 31579909 31580102 -250613562 - AluSq SINE Alu -16 297 105 680 153 5 117 chr1 31580416 31580527 -250613137 + Charlie1a DNA MER1_type 1282 1363 -1398 2308 104 3 3 chr1 31580527 31580834 -250612830 + AluSp SINE Alu 1 307 -6 680 153 5 117 chr1 31580834 31580918 -250612746 + Charlie1a DNA MER1_type 1363 1455 0 649 313 85 0 chr1 31580926 31581150 -250612514 + MIR SINE MIR 2 244 -18 2272 103 0 3 chr1 31581177 31581469 -250612195 + AluSc SINE Alu 1 291 -18 2256 67 3 7 chr1 31581474 31581799 -250611865 + AluSg1 SINE Alu 1 324 0 346 205 134 27 chr1 31582750 31582862 -250610802 + L1ME4a LINE L1 5995 6118 -3 869 199 69 28 chr1 31583313 31583563 -250610101 + L1MC4 LINE L1 6433 6679 -1316 1021 150 43 5 chr1 31583566 31583753 -250609911 + L1MC4 LINE L1 6888 7081 -961 842 161 0 115 chr1 31583765 31583939 -250609725 + AluJb SINE Alu 137 290 -22 2378 81 7 0 chr1 31583946 31584243 -250609421 + AluY SINE Alu 13 311 0 24 32 0 0 chr1 31584492 31584523 -250609141 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 31585128 31585159 -250608505 + AT_rich Low_complexity Low_complexity 1 31 0 2034 109 0 0 chr1 31585833 31586100 -250607564 + AluSx SINE Alu 1 267 -45 1848 164 0 7 chr1 31586334 31586626 -250607038 + AluJo SINE Alu 1 290 -22 207 219 16 0 chr1 31586666 31586713 -250606951 + MIR SINE MIR 107 158 -50 21 0 0 0 chr1 31587156 31587177 -250606487 + AT_rich Low_complexity Low_complexity 1 21 0 298 295 137 22 chr1 31587858 31587997 -250605667 - MIR SINE MIR -74 188 34 2237 78 3 3 chr1 31588103 31588409 -250605255 - AluY SINE Alu 0 306 1 1808 185 3 10 chr1 31588414 31588728 -250604936 - AluJb SINE Alu 0 312 1 181 361 0 14 chr1 31588862 31588934 -250604730 - MIR SINE MIR -8 254 184 25 31 0 0 chr1 31590435 31590467 -250603197 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 31590924 31590947 -250602717 + AT_rich Low_complexity Low_complexity 1 23 0 1945 145 36 7 chr1 31592541 31592844 -250600820 + AluJb SINE Alu 1 312 0 2521 73 0 0 chr1 31592986 31593288 -250600376 + AluSg SINE Alu 1 302 -8 1795 122 0 4 chr1 31593519 31593773 -250599891 - AluSq SINE Alu -11 302 50 242 54 0 0 chr1 31593880 31593917 -250599747 + Alu SINE Alu 260 296 -3 2259 108 3 0 chr1 31594181 31594488 -250599176 - AluSx SINE Alu -4 308 1 2279 105 3 7 chr1 31597204 31597510 -250596154 - AluSx SINE Alu -7 305 1 1414 164 0 4 chr1 31597692 31597917 -250595747 - AluJb SINE Alu -88 224 1 232 229 0 29 chr1 31598210 31598280 -250595384 - L1ME4a LINE L1 -6 6115 6048 2491 84 0 0 chr1 31598329 31598637 -250595027 - AluSc SINE Alu -1 308 1 2482 69 10 0 chr1 31599003 31599306 -250594358 - AluY SINE Alu -5 306 1 2287 86 7 0 chr1 31599436 31599726 -250593938 - AluSp SINE Alu -21 292 1 2380 99 0 3 chr1 31600099 31600412 -250593252 - AluSx SINE Alu 0 312 1 672 238 0 0 chr1 31600894 31601020 -250592644 + FLAM_A SINE Alu 1 126 -7 371 254 77 15 chr1 31601140 31601270 -250592394 + MIR SINE MIR 119 256 -6 406 291 215 53 chr1 31601433 31601828 -250591836 - L2 LINE L2 -3 3269 2811 195 129 0 0 chr1 31601962 31601993 -250591671 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 1872 142 8 0 chr1 31602047 31602314 -250591350 + AluSx SINE Alu 1 269 -43 2274 101 3 0 chr1 31602534 31602830 -250590834 + AluSp SINE Alu 1 297 -16 216 184 0 0 chr1 31603055 31603093 -250590571 + L2 LINE L2 3268 3305 -8 2423 76 20 0 chr1 31604156 31604457 -250589207 - AluSp SINE Alu -6 307 1 6525 104 31 54 chr1 31604617 31605690 -250587974 - L1PA13 LINE L1 0 6163 5103 2168 109 0 0 chr1 31605690 31605974 -250587690 + AluSg SINE Alu 1 284 -26 6525 104 31 54 chr1 31605974 31606305 -250587359 - L1PA13 LINE L1 -1060 5103 4766 2087 143 3 10 chr1 31606330 31606644 -250587020 - AluSx SINE Alu 0 312 1 251 61 0 0 chr1 31606644 31606677 -250586987 - L1PA13 LINE L1 -1371 4775 4743 * 261 177 51 38 chr1 31606657 31606736 -250586928 - L1PA13 LINE L1 -1676 4470 4391 2206 147 30 0 chr1 31606878 31607211 -250586453 + MER2 DNA MER2_type 1 343 -1 1797 155 0 4 chr1 31607574 31607852 -250585812 + AluJo SINE Alu 22 298 -14 516 179 0 12 chr1 31610173 31610257 -250583407 + FRAM/FAM SINE Alu 1 75 -101 2465 55 0 3 chr1 31610272 31610563 -250583101 - AluY SINE Alu -21 290 1 505 283 133 6 chr1 31610632 31610798 -250582866 + MIR SINE MIR 2 188 -74 519 86 0 75 chr1 31610801 31610894 -250582770 - Alu SINE Alu -5 306 221 305 224 0 0 chr1 31611884 31611942 -250581722 - MIR3 SINE MIR 0 208 151 2300 85 7 26 chr1 31612388 31612551 -250581113 - AluSx SINE Alu -11 301 145 2651 46 3 0 chr1 31612551 31612856 -250580808 - AluY SINE Alu -5 306 1 2300 85 7 26 chr1 31612856 31612999 -250580665 - AluSx SINE Alu -167 145 1 2187 115 10 0 chr1 31613097 31613401 -250580263 + AluSp SINE Alu 1 307 -6 435 260 0 10 chr1 31613413 31613513 -250580151 - MIR SINE MIR -71 137 39 * 520 268 118 0 chr1 31613508 31613710 -250579954 + MIR SINE MIR 29 256 -6 2332 97 6 6 chr1 31613764 31614075 -250579589 + AluSq SINE Alu 1 311 -2 1325 101 0 0 chr1 31614075 31614244 -250579420 + AluSg/x SINE Alu 132 300 -10 2269 102 3 0 chr1 31614340 31614643 -250579021 - AluSp SINE Alu -9 304 1 1987 117 4 4 chr1 31614739 31615052 -250578612 - AluSx SINE Alu 0 313 1 2366 85 3 0 chr1 31615111 31615406 -250578258 + AluSp SINE Alu 1 296 -17 2004 138 3 0 chr1 31615946 31616235 -250577429 + AluSx SINE Alu 1 290 -22 1756 148 0 65 chr1 31616247 31616571 -250577093 + AluJb SINE Alu 1 303 -9 193 374 10 20 chr1 31616836 31616935 -250576729 + MIR SINE MIR 38 135 -73 2317 101 0 0 chr1 31617090 31617386 -250576278 + AluSx SINE Alu 11 306 -6 2245 78 11 0 chr1 31617570 31617874 -250575790 + AluY SINE Alu 1 307 0 2393 97 0 0 chr1 31617892 31618191 -250575473 + AluSg SINE Alu 1 299 -11 816 176 0 34 chr1 31618348 31618496 -250575168 - FLAM_C SINE Alu 0 143 1 419 256 207 10 chr1 31618846 31619049 -250574615 + MIR SINE MIR 20 262 0 421 335 64 11 chr1 31619147 31619335 -250574329 + MIR3 SINE MIR 7 204 -4 442 296 6 52 chr1 31619778 31619950 -250573714 + MIR SINE MIR 8 171 -91 2161 114 20 0 chr1 31620556 31620855 -250572809 + AluSq SINE Alu 1 305 -8 244 304 109 0 chr1 31620856 31620948 -250572716 + MIR SINE MIR 59 160 -102 2311 119 0 0 chr1 31621305 31621617 -250572047 + AluSx SINE Alu 1 312 0 2253 102 10 16 chr1 31622345 31622649 -250571015 - AluSx SINE Alu -10 302 1 2343 71 14 3 chr1 31624306 31624600 -250569064 - AluSq SINE Alu -16 297 1 30 45 0 0 chr1 31627911 31627955 -250565709 + GC_rich Low_complexity Low_complexity 1 44 0 26 98 0 0 chr1 31630113 31630195 -250563469 + GC_rich Low_complexity Low_complexity 1 82 0 21 71 0 0 chr1 31631082 31631124 -250562540 + GC_rich Low_complexity Low_complexity 1 42 0 343 214 62 0 chr1 31632204 31632316 -250561348 + L2 LINE L2 3124 3242 -30 387 207 37 0 chr1 31632421 31632503 -250561161 + MIR SINE MIR 107 191 -71 1878 134 40 4 chr1 31632515 31632791 -250560873 + AluJo SINE Alu 1 286 -26 2180 115 7 10 chr1 31632803 31632937 -250560727 + AluSx SINE Alu 1 134 -178 2574 66 0 3 chr1 31632937 31633239 -250560425 + AluY SINE Alu 1 301 -10 2180 115 7 10 chr1 31633239 31633409 -250560255 + AluSx SINE Alu 134 304 -8 832 69 0 0 chr1 31633524 31633625 -250560039 + AluSg/x SINE Alu 198 298 -14 188 271 177 10 chr1 31633802 31633898 -250559766 - MIR SINE MIR -74 188 77 307 306 63 0 chr1 31634659 31634770 -250558894 - MIR SINE MIR -117 145 28 219 295 36 0 chr1 31635141 31635234 -250558430 - MIR SINE MIR -108 100 47 2102 110 10 35 chr1 31635243 31635553 -250558111 - AluSx SINE Alu -8 304 3 2227 117 7 0 chr1 31635558 31635857 -250557807 - AluSx SINE Alu -11 301 1 832 165 0 0 chr1 31635865 31635998 -250557666 - AluSp/q SINE Alu -18 295 163 384 93 0 0 chr1 31636001 31636055 -250557609 - Alu SINE Alu -244 56 3 4359 111 66 75 chr1 31636430 31637826 -250555838 - pTR5 LTR ERV1 0 2438 742 1759 161 49 3 chr1 31637986 31638272 -250555392 - AluJb SINE Alu -13 299 1 730 176 0 22 chr1 31638817 31638971 -250554693 + FLAM_C SINE Alu 1 157 -357 216 0 0 0 chr1 31638971 31638995 -250554669 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 2243 106 10 13 chr1 31638995 31639307 -250554357 + AluSx SINE Alu 2 312 0 730 176 0 22 chr1 31639307 31639334 -250554330 + FLAM_C SINE Alu 155 514 0 640 161 50 0 chr1 31639336 31639432 -250554232 + GA-rich Low_complexity Low_complexity 3 112 -59 2614 58 3 3 chr1 31639432 31639742 -250553922 + AluSg SINE Alu 1 310 0 640 161 50 0 chr1 31639742 31639806 -250553858 + GA-rich Low_complexity Low_complexity 112 171 0 201 74 0 0 chr1 31639843 31639870 -250553794 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 231 284 74 21 chr1 31641603 31641698 -250551966 - MIR3 SINE MIR -96 112 13 451 177 21 21 chr1 31641704 31641800 -250551864 - MIR SINE MIR -97 165 70 2288 91 0 33 chr1 31642260 31642567 -250551097 + AluSq SINE Alu 1 297 -16 343 223 62 36 chr1 31642745 31642857 -250550807 - L1ME LINE L1 -377 5744 5630 403 104 17 0 chr1 31643091 31643165 -250550499 + Alu SINE Alu 1 57 -242 356 249 0 12 chr1 31643160 31643257 -250550407 - FLAM_A SINE Alu -61 72 4 * 2615 30 40 0 chr1 31643298 31643594 -250550070 + AluY SINE Alu 1 308 -3 1786 95 4 4 chr1 31643631 31643872 -250549792 - AluSx SINE Alu -22 290 50 328 281 8 66 chr1 31643926 31644047 -250549617 - L1ME3A LINE L1 -113 6057 5944 1933 151 23 0 chr1 31644062 31644411 -250549253 + AluSx SINE Alu 1 356 0 747 138 0 0 chr1 31644414 31644530 -250549134 - AluJo/FLAM SINE Alu -186 116 1 555 238 156 63 chr1 31644560 31644717 -250548947 - L1ME3A LINE L1 -220 5950 5809 2461 72 7 7 chr1 31644717 31645021 -250548643 - AluY SINE Alu -7 304 1 2353 98 0 3 chr1 31645021 31645317 -250548347 - AluSp SINE Alu -18 295 1 555 238 156 63 chr1 31645317 31645460 -250548204 - L1ME3A LINE L1 -360 5810 5621 1935 178 0 0 chr1 31645492 31645796 -250547868 - AluJb SINE Alu -8 304 1 776 237 16 5 chr1 31645796 31645982 -250547682 - L1ME3A LINE L1 -1899 4247 4060 2269 113 0 0 chr1 31645990 31646281 -250547383 - AluSg SINE Alu -18 292 2 2032 103 10 48 chr1 31646323 31646458 -250547206 + AluSx SINE Alu 2 141 -171 2595 61 3 6 chr1 31646458 31646770 -250546894 + AluY SINE Alu 1 311 0 2032 103 10 48 chr1 31646770 31646946 -250546718 + AluSx SINE Alu 141 301 -11 343 289 53 27 chr1 31647015 31647090 -250546574 - L1ME3A LINE L1 -3630 2516 2444 2223 132 0 0 chr1 31647090 31647394 -250546270 - AluSx SINE Alu -7 305 2 343 289 53 27 chr1 31647394 31647505 -250546159 - L1ME3A LINE L1 -3702 2444 2325 2480 85 0 0 chr1 31647507 31647813 -250545851 - AluY SINE Alu -5 306 1 292 138 52 0 chr1 31647814 31647872 -250545792 - Alu SINE Alu -1 301 241 211 184 0 0 chr1 31648119 31648157 -250545507 - L2 LINE L2 -8 3305 3268 2325 101 3 0 chr1 31648382 31648678 -250544986 - AluSp SINE Alu -16 297 1 1909 142 8 0 chr1 31648898 31649165 -250544499 - AluSx SINE Alu -43 269 1 195 129 0 0 chr1 31649219 31649250 -250544414 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 315 294 213 51 chr1 31649384 31649779 -250543885 + L2 LINE L2 2811 3269 -3 344 254 77 15 chr1 31649942 31650072 -250543592 - MIR SINE MIR -6 256 119 602 238 0 0 chr1 31650192 31650318 -250543346 - FLAM_A SINE Alu -7 126 1 2418 102 0 3 chr1 31650800 31651113 -250542551 + AluSx SINE Alu 1 312 0 463 134 0 0 chr1 31651418 31651485 -250542179 - AluS SINE Alu -239 72 6 1991 114 3 14 chr1 31651516 31651832 -250541832 + AluSx SINE Alu 1 313 0 294 147 302 0 chr1 31651833 31651949 -250541715 - L1MCa LINE L1 -3947 2479 2329 2219 105 14 0 chr1 31652473 31652769 -250540895 - AluSp SINE Alu -13 300 1 2296 108 7 0 chr1 31652771 31653066 -250540598 - AluSq SINE Alu -16 297 1 2338 78 0 13 chr1 31653073 31653379 -250540285 - AluY SINE Alu -9 302 1 282 233 78 58 chr1 31653679 31653782 -250539882 + L2 LINE L2 3192 3296 -17 2486 68 0 0 chr1 31654150 31654444 -250539220 - AluY SINE Alu -16 295 2 1140 92 0 0 chr1 31654468 31654610 -250539054 + AluSg SINE Alu 2 143 -167 2359 84 7 3 chr1 31654610 31654909 -250538755 + AluSc SINE Alu 2 301 -8 2170 130 13 0 chr1 31656058 31656359 -250537305 + AluSq SINE Alu 1 305 -8 2305 96 0 3 chr1 31656673 31656966 -250536698 - AluSg SINE Alu -18 292 1 29 70 0 0 chr1 31657116 31657173 -250536491 + AT_rich Low_complexity Low_complexity 1 57 0 261 286 14 14 chr1 31658064 31658204 -250535460 + (CTG)n Simple_repeat Simple_repeat 2 141 0 * 266 282 0 53 chr1 31658108 31658296 -250535368 + CT-rich Low_complexity Low_complexity 1 178 0 2319 92 0 22 chr1 31658701 31659017 -250534647 + AluSg SINE Alu 1 309 -1 1544 184 67 3 chr1 31659062 31659345 -250534319 + AluJb SINE Alu 1 301 -11 299 333 156 44 chr1 31659553 31659581 -250534083 + L2 LINE L2 2198 2221 -1093 2340 91 3 0 chr1 31659581 31659866 -250533798 - AluSp SINE Alu -27 286 1 299 333 156 44 chr1 31659866 31660293 -250533371 + L2 LINE L2 2221 2704 -610 476 243 93 29 chr1 31660330 31660470 -250533194 + L1MC4 LINE L1 6769 6917 -1125 396 238 66 20 chr1 31660479 31660630 -250533034 + L1MC5 LINE L1 7269 7426 -535 1178 125 5 22 chr1 31660630 31660814 -250532850 + AluSg/x SINE Alu 115 295 -15 651 251 85 73 chr1 31660843 31661254 -250532410 + L1MC4 LINE L1 7596 8011 -31 461 242 128 49 chr1 31661267 31661298 -250532366 + L1MC5 LINE L1 7581 7608 -353 873 144 0 0 chr1 31661298 31661430 -250532234 + FLAM_C SINE Alu 1 132 -1 461 242 128 49 chr1 31661430 31661725 -250531939 + L1MC5 LINE L1 7608 7933 -28 336 357 141 33 chr1 31661801 31661942 -250531722 + L2 LINE L2 2811 2935 -337 2355 104 0 13 chr1 31661942 31662251 -250531413 + AluSx SINE Alu 4 308 -4 336 357 141 33 chr1 31662251 31662439 -250531225 + L2 LINE L2 2935 3193 -79 2162 103 0 51 chr1 31662439 31662751 -250530913 - AluSx SINE Alu -16 296 1 336 357 141 33 chr1 31662751 31662818 -250530846 + L2 LINE L2 3193 3251 -21 2347 70 17 17 chr1 31662904 31663205 -250530459 - AluSp SINE Alu -12 301 1 1984 90 26 11 chr1 31663216 31663364 -250530300 - AluSg SINE Alu -25 285 130 2065 96 13 46 chr1 31663364 31663667 -250529997 - AluSq SINE Alu -19 294 2 1984 90 26 11 chr1 31663667 31663785 -250529879 - AluSg SINE Alu -180 130 15 1876 171 3 3 chr1 31664453 31664751 -250528913 + AluJo SINE Alu 1 298 -14 1757 173 3 14 chr1 31664813 31665097 -250528567 - AluSx SINE Alu -31 281 1 494 101 0 0 chr1 31665270 31665363 -250528301 + AluSc SINE Alu 213 305 0 2080 134 7 3 chr1 31665377 31665675 -250527989 + AluSx SINE Alu 1 299 -13 622 261 36 10 chr1 31665749 31665944 -250527720 - MIR SINE MIR -32 230 31 3642 94 3 52 chr1 31666037 31666613 -250527051 - LTR14 LTR ERVK 0 548 1 206 114 159 23 chr1 31666860 31666904 -250526760 + MIR SINE MIR 20 69 -139 2162 108 14 10 chr1 31667194 31667489 -250526175 + AluSx SINE Alu 1 296 -16 1472 117 0 15 chr1 31667740 31667937 -250525727 - AluSg/x SINE Alu -16 296 103 517 189 0 0 chr1 31667987 31668082 -250525582 + AluJb SINE Alu 23 117 -195 323 164 66 0 chr1 31668082 31668143 -250525521 + AluJ/FRAM SINE Alu 227 291 -11 2059 78 56 7 chr1 31668146 31668415 -250525249 + AluSg1 SINE Alu 1 282 -27 405 0 0 0 chr1 31668415 31668460 -250525204 + (CAAAC)n Simple_repeat Simple_repeat 1 45 0 186 43 0 0 chr1 31670894 31670917 -250522747 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2210 86 29 0 chr1 31670919 31671199 -250522465 - AluSx SINE Alu -24 288 1 23 0 0 0 chr1 31672354 31672377 -250521287 + AT_rich Low_complexity Low_complexity 1 23 0 398 298 120 6 chr1 31672979 31673137 -250520527 - MIR SINE MIR -75 187 12 384 282 107 7 chr1 31673157 31673323 -250520341 + MIR3 SINE MIR 46 222 -18 682 179 0 0 chr1 31673339 31673456 -250520208 - FLAM_A SINE Alu -16 117 1 228 254 28 14 chr1 31673783 31673854 -250519810 + (TA)n Simple_repeat Simple_repeat 2 73 0 961 177 59 15 chr1 31674187 31674390 -250519274 + MER46A DNA MER2_type 2 213 -23 231 239 63 113 chr1 31675972 31676114 -250517550 - MIR3 SINE MIR -62 146 12 2306 117 0 0 chr1 31676690 31676989 -250516675 - AluSg SINE Alu -11 299 1 183 235 39 39 chr1 31677067 31677118 -250516546 + MIR SINE MIR 186 236 -26 * 540 315 63 13 chr1 31677076 31677314 -250516350 - MIR SINE MIR -8 254 5 1852 136 3 60 chr1 31677319 31677636 -250516028 - AluSx SINE Alu -13 299 1 469 264 172 35 chr1 31678379 31678606 -250515058 - MIR SINE MIR 0 262 5 394 286 40 18 chr1 31680721 31680853 -250512811 + MIR SINE MIR 34 172 -61 2276 116 10 0 chr1 31681595 31681897 -250511767 - AluSx SINE Alu -7 305 1 852 264 52 26 chr1 31681942 31682324 -250511340 + L1ME4a LINE L1 5515 5906 -215 2517 64 0 22 chr1 31682436 31682749 -250510915 - AluY SINE Alu -5 306 1 2171 96 61 3 chr1 31682759 31683052 -250510612 - AluSx SINE Alu -2 310 1 28 71 0 0 chr1 31683125 31683181 -250510483 + AT_rich Low_complexity Low_complexity 1 56 0 2345 96 0 16 chr1 31683212 31683526 -250510138 + AluSx SINE Alu 4 312 0 802 282 67 23 chr1 31683532 31683919 -250509745 + L1ME4a LINE L1 5522 5925 -196 2353 98 7 0 chr1 31683978 31684274 -250509390 - AluSc SINE Alu -11 298 1 24 0 0 0 chr1 31684280 31684304 -250509360 + AT_rich Low_complexity Low_complexity 1 24 0 1855 112 82 4 chr1 31684442 31684711 -250508953 + AluSx SINE Alu 1 290 -22 2686 51 0 0 chr1 31684716 31685027 -250508637 + AluY SINE Alu 1 311 0 2496 90 0 0 chr1 31685276 31685587 -250508077 + AluY SINE Alu 1 311 0 22 70 0 0 chr1 31685775 31685818 -250507846 + AT_rich Low_complexity Low_complexity 1 43 0 2257 111 3 3 chr1 31686582 31686888 -250506776 - AluSp SINE Alu -7 306 1 2366 117 0 0 chr1 31687200 31687507 -250506157 - AluSx SINE Alu -5 307 1 2346 49 26 42 chr1 31687661 31687969 -250505695 - AluY SINE Alu -8 303 1 1247 184 120 30 chr1 31688687 31688953 -250504711 - AluJo SINE Alu -9 293 4 368 263 114 34 chr1 31689399 31689552 -250504112 - MIR SINE MIR -45 163 2 181 79 0 53 chr1 31691142 31691180 -250502484 + (CGG)n Simple_repeat Simple_repeat 1 36 0 505 259 83 51 chr1 31691528 31691744 -250501920 + MIR SINE MIR 28 250 -12 539 245 32 69 chr1 31691824 31691869 -250501795 + MIR SINE MIR 76 121 -141 2415 65 3 0 chr1 31691869 31692163 -250501501 - AluSx SINE Alu -17 295 1 539 245 32 69 chr1 31692163 31692305 -250501359 + MIR SINE MIR 121 256 -6 294 274 216 19 chr1 31692507 31692701 -250500963 - L1MC4a LINE L1 -1886 5922 5683 222 37 0 0 chr1 31692701 31692728 -250500936 + (TC)n Simple_repeat Simple_repeat 2 28 0 294 274 216 19 chr1 31692728 31692741 -250500923 - L1MC4a LINE L1 -2125 5683 5674 646 226 140 11 chr1 31692801 31693117 -250500547 - L1MC4a LINE L1 -748 5398 5162 2204 103 3 10 chr1 31693184 31693496 -250500168 - AluSg SINE Alu 0 310 1 1797 100 4 8 chr1 31693496 31693734 -250499930 - AluSx SINE Alu -14 298 61 2021 142 3 3 chr1 31693789 31694077 -250499587 + AluSq SINE Alu 1 288 -25 604 184 53 66 chr1 31694080 31694160 -250499504 - AluJo SINE Alu -161 151 72 2420 95 0 3 chr1 31694160 31694465 -250499199 + AluSq SINE Alu 1 304 -9 604 184 53 66 chr1 31694465 31694536 -250499128 - AluJo SINE Alu -240 72 2 30 0 0 0 chr1 31694540 31694570 -250499094 + AT_rich Low_complexity Low_complexity 1 30 0 1200 142 0 0 chr1 31694573 31694742 -250498922 - AluSg/x SINE Alu -19 293 125 2150 105 11 0 chr1 31694747 31695032 -250498632 - AluSp SINE Alu -25 288 1 1112 179 0 47 chr1 31695100 31695334 -250498330 + AluJb SINE Alu 88 310 -2 191 300 0 0 chr1 31695612 31695652 -250498012 + L2 LINE L2 2928 2967 -346 636 251 35 48 chr1 31695686 31695913 -250497751 + L2 LINE L2 3090 3313 0 201 229 98 0 chr1 31695915 31695976 -250497688 + L2 LINE L2 2595 2661 -653 430 217 53 86 chr1 31696122 31696274 -250497390 + MIR3 SINE MIR 39 185 -23 2092 101 24 10 chr1 31696531 31696827 -250496837 - AluSx SINE Alu -12 300 1 1769 90 0 57 chr1 31696915 31697072 -250496592 - AluSg/x SINE Alu -10 302 162 2573 66 0 3 chr1 31697072 31697376 -250496288 + AluY SINE Alu 1 303 -8 1769 90 0 57 chr1 31697376 31697463 -250496201 - AluSg/x SINE Alu -150 162 72 2002 129 3 48 chr1 31697512 31697823 -250495841 - AluSx SINE Alu -15 297 1 2375 81 14 0 chr1 31697962 31698258 -250495406 - AluSq SINE Alu -13 300 1 2187 114 10 0 chr1 31698267 31698556 -250495108 - AluSq SINE Alu -20 293 2 447 67 0 0 chr1 31698557 31698617 -250495047 - AluSq/x SINE Alu -177 135 76 1238 147 5 47 chr1 31698620 31698831 -250494833 - AluJb SINE Alu -108 204 3 834 194 127 99 chr1 31699257 31699413 -250494251 - MLT1J LTR MaLR 0 511 361 2102 45 0 4 chr1 31699413 31699657 -250494007 + AluY SINE Alu 1 243 -68 834 194 127 99 chr1 31699657 31699674 -250493990 - MLT1J LTR MaLR -150 361 346 237 33 0 0 chr1 31699674 31699704 -250493960 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 834 194 127 99 chr1 31699704 31699832 -250493832 - MLT1J LTR MaLR -165 346 223 2165 104 19 19 chr1 31699832 31700139 -250493525 + AluSx SINE Alu 1 307 -5 834 194 127 99 chr1 31700139 31700298 -250493366 - MLT1J LTR MaLR -288 223 36 240 330 75 0 chr1 31700323 31700429 -250493235 + L2 LINE L2 2921 3034 -238 1198 123 0 0 chr1 31700631 31700793 -250492871 - AluSg/x SINE Alu -19 291 130 2209 109 3 0 chr1 31701132 31701426 -250492238 + AluSg SINE Alu 1 295 -15 429 322 160 27 chr1 31701446 31701926 -250491738 + L2 LINE L2 2718 3266 -6 217 266 80 62 chr1 31702160 31702221 -250491443 + L2 LINE L2 3106 3171 -142 984 203 13 48 chr1 31702221 31702267 -250491397 - MER20 DNA MER1_type 0 219 173 2181 138 0 0 chr1 31702267 31702565 -250491099 - AluJb SINE Alu -14 298 1 984 203 13 48 chr1 31702565 31702745 -250490919 - MER20 DNA MER1_type -46 173 1 217 266 80 62 chr1 31702745 31702796 -250490868 + L2 LINE L2 3171 3220 -93 2043 151 0 19 chr1 31704156 31704468 -250489196 + AluJb SINE Alu 3 308 -4 374 208 0 0 chr1 31704790 31704862 -250488802 + MIR SINE MIR 85 156 -106 446 139 36 158 chr1 31704879 31705014 -250488650 - MIR SINE MIR -81 127 7 229 292 124 0 chr1 31704999 31705088 -250488576 + L2 LINE L2 3125 3224 -48 * 1891 147 7 10 chr1 31705725 31706018 -250487646 + AluJo SINE Alu 1 292 -20 1682 190 20 16 chr1 31706043 31706348 -250487316 + AluJb SINE Alu 2 307 -5 199 256 0 0 chr1 31706349 31706388 -250487276 + MER5A DNA MER1_type 68 106 -83 191 260 50 50 chr1 31706526 31706626 -250487038 + MIR SINE MIR 36 135 -127 420 283 0 0 chr1 31707103 31707195 -250486469 - MIR SINE MIR -5 257 166 194 222 74 19 chr1 31707167 31707221 -250486443 - MIR3 SINE MIR -37 171 115 * 2220 154 3 3 chr1 31707268 31707605 -250486059 - MER1B DNA MER1_type 0 337 1 510 266 5 58 chr1 31707605 31707782 -250485882 - MIR SINE MIR -80 182 14 278 313 128 39 chr1 31707866 31707929 -250485735 + MIR SINE MIR 49 105 -157 2271 123 0 0 chr1 31707929 31708237 -250485427 - AluSx SINE Alu -4 308 1 278 313 128 39 chr1 31708237 31708352 -250485312 + MIR SINE MIR 105 243 -19 181 326 0 0 chr1 31708434 31708480 -250485184 + L2 LINE L2 3264 3309 -4 2458 70 0 0 chr1 31708549 31708847 -250484817 - AluY SINE Alu -13 298 1 1914 149 45 7 chr1 31708940 31709228 -250484436 - AluSx SINE Alu -13 299 1 918 128 23 0 chr1 31709248 31709381 -250484283 - AluJo SINE Alu -176 136 1 1820 180 3 25 chr1 31710100 31710416 -250483248 - AluJo SINE Alu -3 309 1 332 268 123 45 chr1 31710724 31710903 -250482761 + MIR SINE MIR 16 208 -54 302 271 104 10 chr1 31711921 31712017 -250481647 + MIR SINE MIR 61 165 -97 259 372 21 35 chr1 31712851 31712996 -250480668 + L2 LINE L2 2917 3059 -213 299 336 44 29 chr1 31713278 31713415 -250480249 + MIR SINE MIR 2 140 -122 1128 58 0 15 chr1 31713415 31713552 -250480112 + AluSg/x SINE Alu 159 293 -19 681 221 54 45 chr1 31713716 31713938 -250479726 - MER112 DNA MER1_type -15 245 22 440 227 129 76 chr1 31714493 31714554 -250479110 + LTR16C LTR ERVL 255 311 -180 2058 100 25 4 chr1 31714554 31714835 -250478829 + AluSg SINE Alu 1 287 -23 440 227 129 76 chr1 31714835 31714998 -250478666 + LTR16C LTR ERVL 311 491 0 366 280 21 0 chr1 31714998 31715091 -250478573 + MIR SINE MIR 60 154 -108 317 284 158 8 chr1 31715170 31715297 -250478367 - MIR SINE MIR -110 152 7 271 203 253 0 chr1 31715437 31715516 -250478148 + L2 LINE L2 3174 3272 0 1997 160 7 0 chr1 31716118 31716425 -250477239 - AluSx SINE Alu -3 309 1 1714 168 23 29 chr1 31716468 31716778 -250476886 + AluJo SINE Alu 5 312 0 181 245 29 128 chr1 31716780 31716882 -250476782 - L2 LINE L2 -1335 1979 1888 2439 71 3 0 chr1 31717003 31717297 -250476367 - AluSq SINE Alu -18 295 1 478 281 98 7 chr1 31717564 31717717 -250475947 - MIR3 SINE MIR -7 201 35 238 291 296 12 chr1 31717757 31718004 -250475660 - L2 LINE L2 -76 3237 2921 641 205 79 51 chr1 31718130 31718345 -250475319 + MER112 DNA MER1_type 28 248 -12 624 309 72 0 chr1 31718392 31718657 -250475007 - L2 LINE L2 -548 2766 2483 220 313 125 27 chr1 31718687 31718799 -250474865 + MIR SINE MIR 13 135 -127 2366 87 0 7 chr1 31719018 31719316 -250474348 - AluY SINE Alu -15 296 1 546 279 96 24 chr1 31719724 31719932 -250473732 + MIR SINE MIR 34 256 -6 1067 169 48 87 chr1 31720029 31720093 -250473571 + MER58A DNA MER1_type 3 68 -2352 1458 187 90 4 chr1 31720093 31720371 -250473293 - AluJb SINE Alu -10 302 1 1067 169 48 87 chr1 31720371 31720537 -250473127 + MER58A DNA MER1_type 68 224 0 321 257 159 18 chr1 31720630 31720743 -250472921 - MIR SINE MIR -63 145 17 309 355 153 0 chr1 31720934 31721058 -250472606 + L2 LINE L2 3122 3264 -8 2128 97 32 26 chr1 31721139 31721447 -250472217 + AluSx SINE Alu 1 310 -2 518 328 119 39 chr1 31721509 31722260 -250471404 + L2 LINE L2 2443 3248 -24 532 225 67 0 chr1 31722774 31722894 -250470770 + MIR SINE MIR 129 256 -6 259 316 46 40 chr1 31722940 31723031 -250470633 + MLT1K LTR MaLR 421 510 -78 2373 102 3 0 chr1 31723031 31723334 -250470330 - AluSx SINE Alu -8 304 1 2342 110 0 0 chr1 31723334 31723635 -250470029 - AluSx SINE Alu -11 301 1 259 316 46 40 chr1 31723635 31723694 -250469970 + MLT1K LTR MaLR 509 573 -15 260 243 69 88 chr1 31723713 31723898 -250469766 + MIR SINE MIR 34 218 -44 690 112 0 10 chr1 31724007 31724105 -250469559 - FRAM SINE Alu -31 145 49 2030 129 28 0 chr1 31724411 31724697 -250468967 + AluSx SINE Alu 6 299 -13 2402 93 3 3 chr1 31724697 31725009 -250468655 + AluSq SINE Alu 1 312 -1 271 274 207 30 chr1 31725289 31725453 -250468211 + MIR SINE MIR 13 205 -57 535 169 0 0 chr1 31726314 31726397 -250467267 + AluJb SINE Alu 36 118 -194 26 30 0 0 chr1 31726397 31726430 -250467234 + AT_rich Low_complexity Low_complexity 1 33 0 471 329 35 12 chr1 31726510 31726680 -250466984 + MIR SINE MIR 77 250 -12 2162 100 3 16 chr1 31726782 31727092 -250466572 - AluSx SINE Alu -6 306 1 447 207 48 55 chr1 31727776 31727921 -250465743 + MER5B DNA MER1_type 1 144 -34 756 163 0 24 chr1 31727924 31728081 -250465583 + FLAM_A SINE Alu 1 133 0 1562 124 135 4 chr1 31728183 31728442 -250465222 - AluSg1 SINE Alu -14 295 3 186 241 19 19 chr1 31728685 31728739 -250464925 - L2 LINE L2 -8 3264 3211 2217 77 3 7 chr1 31729034 31729332 -250464332 - AluSx SINE Alu -15 297 1 412 235 130 23 chr1 31729510 31729644 -250464020 - MIR SINE MIR -67 141 8 217 280 11 65 chr1 31729761 31729854 -250463810 - MIR SINE MIR -121 141 54 337 297 0 30 chr1 31729928 31730029 -250463635 + MIR SINE MIR 16 113 -95 856 238 72 8 chr1 31730120 31730355 -250463309 + MIR SINE MIR 11 260 -2 189 180 246 0 chr1 31731068 31731129 -250462535 - MIR SINE MIR -13 249 174 627 244 103 1 chr1 31731184 31731363 -250462301 + MIR SINE MIR 6 198 -62 183 80 0 0 chr1 31731631 31731656 -250462008 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 410 248 48 19 chr1 31731713 31731818 -250461846 + MER5A DNA MER1_type 60 167 -22 274 311 41 33 chr1 31731727 31731849 -250461815 - MER5A DNA MER1_type -66 123 1 * 787 242 19 92 chr1 31731938 31732198 -250461466 + MIR SINE MIR 21 261 -1 299 265 0 24 chr1 31732198 31732281 -250461383 + MIR SINE MIR 182 262 0 228 279 44 0 chr1 31732999 31733067 -250460597 + L2 LINE L2 3227 3297 -16 2105 73 50 30 chr1 31733210 31733510 -250460154 - AluSq SINE Alu -7 306 1 501 221 0 46 chr1 31733622 31733753 -250459911 + MIR SINE MIR 20 144 -118 879 296 63 32 chr1 31734328 31734843 -250458821 + L2 LINE L2 2720 3239 -74 278 272 81 66 chr1 31734836 31734884 -250458780 - L2 LINE L2 0 3313 3267 * 2108 99 0 0 chr1 31734884 31735194 -250458470 + AluSq SINE Alu 1 310 0 278 272 81 66 chr1 31735194 31735278 -250458386 - L2 LINE L2 -46 3267 3176 491 191 59 66 chr1 31735416 31735568 -250458096 + L2 LINE L2 3159 3309 -4 219 226 95 48 chr1 31735677 31735761 -250457903 + MIR SINE MIR 149 236 -26 511 278 78 29 chr1 31735790 31736035 -250457629 + L3 LINE CR1 1264 1520 -57 186 71 0 0 chr1 31736352 31736380 -250457284 + (CTCCG)n Simple_repeat Simple_repeat 1 28 0 29 47 0 0 chr1 31736417 31736460 -250457204 + GC_rich Low_complexity Low_complexity 1 43 0 201 182 0 0 chr1 31737377 31737410 -250456254 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 31737491 31737512 -250456152 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 31737577 31737618 -250456046 + GC_rich Low_complexity Low_complexity 1 41 0 239 147 103 44 chr1 31737624 31737760 -250455904 + (CCGGG)n Simple_repeat Simple_repeat 3 146 0 294 294 17 8 chr1 31737988 31738107 -250455557 + (TG)n Simple_repeat Simple_repeat 2 121 0 222 324 0 0 chr1 31738694 31738768 -250454896 + MIR SINE MIR 83 156 -106 567 320 64 64 chr1 31739809 31740247 -250453417 + L2 LINE L2 2835 3272 0 2247 110 0 0 chr1 31741406 31741716 -250451948 - AluSg SINE Alu 0 310 1 2284 94 0 0 chr1 31741716 31742015 -250451649 - AluSx SINE Alu -13 299 1 232 200 0 22 chr1 31742261 31742306 -250451358 + MER3 DNA MER1_type 3 46 -163 903 195 65 20 chr1 31742307 31742507 -250451157 - MER3 DNA MER1_type 0 209 1 314 293 88 94 chr1 31742640 31742722 -250450942 + L2 LINE L2 2588 2669 -645 2114 107 0 0 chr1 31742722 31743020 -250450644 - AluY SINE Alu -13 298 1 314 293 88 94 chr1 31743020 31743289 -250450375 + L2 LINE L2 2669 2937 -377 2190 112 0 0 chr1 31743446 31743759 -250449905 + AluSq SINE Alu 1 313 0 24 0 0 0 chr1 31743781 31743805 -250449859 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 31743951 31743989 -250449675 + AT_rich Low_complexity Low_complexity 1 38 0 838 205 7 0 chr1 31743989 31744140 -250449524 - FRAM SINE Alu -14 152 1 1041 154 6 0 chr1 31744275 31744444 -250449220 + AluJo SINE Alu 1 170 -142 2068 103 3 52 chr1 31744686 31745015 -250448649 + AluSp SINE Alu 1 313 0 2077 100 0 37 chr1 31745576 31745897 -250447767 - AluSx SINE Alu -3 309 1 195 336 87 39 chr1 31746251 31746355 -250447309 + MIR3 SINE MIR 49 157 -51 343 170 0 0 chr1 31746935 31746982 -250446682 + G-rich Low_complexity Low_complexity 1 47 0 1800 5 0 0 chr1 31747082 31747278 -250446386 - L1HS LINE L1 -157 5998 5803 900 112 0 8 chr1 31747743 31747877 -250445787 + FLAM_C SINE Alu 1 133 0 2067 98 11 0 chr1 31749077 31749362 -250444302 + AluSq SINE Alu 1 288 -25 2000 127 0 0 chr1 31749464 31749756 -250443908 - AluSx SINE Alu -20 292 1 450 149 0 0 chr1 31749838 31749905 -250443759 - FLAM_A SINE Alu -33 109 43 2148 86 3 7 chr1 31750034 31750324 -250443340 - AluSp SINE Alu -24 289 1 217 309 209 0 chr1 31750704 31750814 -250442850 - MIR SINE MIR -97 165 33 209 356 0 0 chr1 31750871 31750961 -250442703 + MIR3 SINE MIR 111 200 -8 1805 163 0 0 chr1 31750963 31751258 -250442406 + AluJb SINE Alu 4 298 -14 1041 158 0 0 chr1 31752831 31752996 -250440668 + FRAM SINE Alu 2 166 0 305 130 0 0 chr1 31753021 31753075 -250440589 - Alu SINE Alu 0 300 247 24 53 0 0 chr1 31754610 31754648 -250439016 + AT_rich Low_complexity Low_complexity 1 38 0 2309 92 0 0 chr1 31755258 31755562 -250438102 + AluSx SINE Alu 1 304 -8 210 298 91 50 chr1 31755715 31755836 -250437828 + MIR SINE MIR 49 174 -88 21 0 0 0 chr1 31756323 31756344 -250437320 + AT_rich Low_complexity Low_complexity 1 21 0 2447 57 3 0 chr1 31757308 31757605 -250436059 + AluY SINE Alu 3 300 -11 2154 112 3 0 chr1 31757626 31757922 -250435742 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr1 31758186 31758208 -250435456 + AT_rich Low_complexity Low_complexity 1 22 0 608 263 153 55 chr1 31758259 31758567 -250435097 - L3 LINE CR1 -3 1574 1237 832 176 7 0 chr1 31759191 31759344 -250434320 + AluJb SINE Alu 137 290 -22 820 144 0 0 chr1 31759719 31759844 -250433820 + FLAM_A SINE Alu 1 125 -8 1536 182 45 27 chr1 31760085 31760374 -250433290 - MER58B DNA MER1_type -2079 341 44 1944 135 28 0 chr1 31760374 31760662 -250433002 + AluSx SINE Alu 1 296 -16 1536 182 45 27 chr1 31760662 31760707 -250432957 - MER58B DNA MER1_type -2376 44 1 1238 206 51 20 chr1 31760907 31761199 -250432465 + AluJo SINE Alu 2 302 0 33 114 0 0 chr1 31761267 31761355 -250432309 + AT_rich Low_complexity Low_complexity 1 88 0 122 83 0 7 chr1 31761390 31761692 -250431972 + AT_rich Low_complexity Low_complexity 1 300 0 909 224 35 39 chr1 31762264 31762523 -250431141 + MIR SINE MIR 4 261 -1 2065 125 0 0 chr1 31764286 31764581 -250429083 - AluSx SINE Alu -17 295 1 441 269 77 0 chr1 31766631 31766761 -250426903 - MIR3 SINE MIR -35 173 34 234 156 0 0 chr1 31766824 31766869 -250426795 + (CA)n Simple_repeat Simple_repeat 1 45 0 290 288 147 39 chr1 31767518 31767978 -250425686 + L2 LINE L2 2724 3241 -31 409 234 47 9 chr1 31768076 31768183 -250425481 + MIR SINE MIR 51 161 -101 1893 147 3 3 chr1 31768640 31768939 -250424725 + AluSx SINE Alu 1 299 -13 2134 128 0 0 chr1 31769927 31770239 -250423425 - AluSx SINE Alu 0 312 1 4523 139 94 33 chr1 31770402 31771224 -250422440 - MER21A LTR ERV1 0 931 60 22 0 0 0 chr1 31771224 31771246 -250422418 + AT_rich Low_complexity Low_complexity 1 22 0 403 301 206 14 chr1 31771543 31771762 -250421902 - MIR SINE MIR -1 261 1 246 263 0 0 chr1 31771762 31771818 -250421846 + MIR SINE MIR 94 149 -59 1645 75 0 0 chr1 31772463 31772675 -250420989 - AluSc SINE Alu -16 293 82 780 224 132 26 chr1 31774080 31774308 -250419356 + MIR SINE MIR 8 259 -3 1604 113 0 17 chr1 31774410 31774650 -250419014 - AluSg/x SINE Alu -4 306 71 2166 90 6 34 chr1 31774650 31774969 -250418695 - AluSq SINE Alu -1 312 1 266 286 0 0 chr1 31774984 31775040 -250418624 + L2 LINE L2 3217 3272 0 416 250 171 0 chr1 31775259 31775411 -250418253 - L1ME3A LINE L1 -5 6165 5988 2034 114 0 7 chr1 31775446 31775743 -250417921 - AluSx SINE Alu -15 297 3 22 0 0 0 chr1 31775973 31775995 -250417669 + AT_rich Low_complexity Low_complexity 1 22 0 2917 3 0 0 chr1 31776324 31776633 -250417031 + AluYa5 SINE Alu 1 309 -2 1861 166 0 3 chr1 31776640 31776923 -250416741 + AluJb SINE Alu 1 325 0 388 0 0 0 chr1 31776923 31776966 -250416698 + (TAAA)n Simple_repeat Simple_repeat 2 160 0 2455 69 0 0 chr1 31777129 31777435 -250416229 + AluY SINE Alu 1 306 -5 2224 122 3 3 chr1 31777643 31777955 -250415709 + AluSx SINE Alu 1 312 0 22 35 0 0 chr1 31778388 31778417 -250415247 + AT_rich Low_complexity Low_complexity 1 29 0 2425 82 0 3 chr1 31779100 31779405 -250414259 - AluSq SINE Alu -7 306 3 2242 99 3 16 chr1 31779523 31779826 -250413838 - AluY SINE Alu -12 299 1 1849 123 43 0 chr1 31779947 31780223 -250413441 - AluSx SINE Alu -19 293 6 417 340 49 14 chr1 31780250 31780394 -250413270 - L2 LINE L2 -5 3267 3119 489 83 0 0 chr1 31780433 31780493 -250413171 - AluSx SINE Alu -17 292 233 1283 137 11 16 chr1 31780493 31780683 -250412981 - AluSx SINE Alu -123 189 1 363 368 37 37 chr1 31781305 31781468 -250412196 - L2 LINE L2 -6 3266 3104 307 197 82 34 chr1 31781606 31781729 -250411935 + MIR SINE MIR 31 154 -62 2103 138 0 3 chr1 31782287 31782583 -250411081 + AluSx SINE Alu 1 295 -17 280 304 36 18 chr1 31782597 31782709 -250410955 - MIR3 SINE MIR -28 180 67 784 170 67 0 chr1 31782832 31782967 -250410697 + AluJb SINE Alu 158 301 -11 2165 125 0 10 chr1 31783024 31783337 -250410327 - AluSx SINE Alu -2 310 1 1983 125 7 0 chr1 31783611 31783946 -250409718 + AluSx SINE Alu 1 337 0 2001 133 3 3 chr1 31783955 31784256 -250409408 + AluSx SINE Alu 1 301 -11 952 278 8 28 chr1 31784489 31784741 -250408923 + MIR SINE MIR 16 262 0 272 307 136 0 chr1 31784988 31785076 -250408588 - L2 LINE L2 -38 3275 3176 1963 138 7 0 chr1 31785217 31785524 -250408140 - AluSx SINE Alu 0 319 11 200 361 19 28 chr1 31785634 31785742 -250407922 - MIR SINE MIR -82 126 20 1319 272 105 37 chr1 31785777 31786159 -250407505 - L2 LINE L2 -35 3278 2820 719 216 155 0 chr1 31786159 31786340 -250407324 + MER3 DNA MER1_type 1 209 0 1319 272 105 37 chr1 31786340 31786610 -250407054 - L2 LINE L2 -493 2820 2570 1464 147 20 49 chr1 31786725 31786970 -250406694 - AluJb SINE Alu -69 243 6 1718 150 0 18 chr1 31787045 31787325 -250406339 - AluJb SINE Alu -10 302 28 10912 144 36 13 chr1 31787342 31789110 -250404554 - Ricksha DNA DNA -1348 1898 91 555 138 0 0 chr1 31789043 31789123 -250404541 + Ricksha DNA DNA 2775 2854 0 * 261 0 0 0 chr1 31839461 31839490 -250354174 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 465 318 68 17 chr1 31839691 31839867 -250353797 - MIR SINE MIR -66 196 12 206 326 21 11 chr1 31843115 31843210 -250350454 - MIR3 SINE MIR -51 157 62 314 324 173 11 chr1 31843570 31843749 -250349915 - MIR SINE MIR -9 253 46 262 274 83 12 chr1 31844632 31844716 -250348948 + L2 LINE L2 3134 3223 -49 1619 86 0 9 chr1 31844845 31845065 -250348599 - AluY SINE Alu -11 300 83 2089 103 0 17 chr1 31845076 31845368 -250348296 - AluSq SINE Alu -24 289 3 274 338 88 44 chr1 31845446 31845742 -250347922 - L2 LINE L2 0 3313 3005 554 281 0 27 chr1 31846468 31846653 -250347011 + (TG)n Simple_repeat Simple_repeat 1 180 0 572 260 78 37 chr1 31847493 31847731 -250345933 - MIR SINE MIR -8 254 3 425 353 168 10 chr1 31847802 31848307 -250345357 - L3 LINE CR1 -509 1068 484 631 279 64 10 chr1 31849606 31849810 -250343854 + MIR SINE MIR 11 225 -37 2047 118 0 46 chr1 31850059 31850234 -250343430 - AluSx SINE Alu -4 308 153 2148 105 7 0 chr1 31850234 31850529 -250343135 - AluSx SINE Alu -15 297 1 2047 118 0 46 chr1 31850529 31850676 -250342988 - AluSx SINE Alu -159 153 1 2416 63 0 0 chr1 31850723 31851023 -250342641 - AluY SINE Alu -9 302 3 2481 278 83 25 chr1 31851077 31852274 -250341390 - L1ME3A LINE L1 -220 5950 4824 1854 140 3 34 chr1 31852274 31852596 -250341068 - AluJb SINE Alu 0 312 1 2481 278 83 25 chr1 31852596 31852941 -250340723 - L1ME3A LINE L1 -1346 4824 4500 2165 106 0 13 chr1 31852941 31853242 -250340422 - AluSx SINE Alu -15 297 1 2481 278 83 25 chr1 31853242 31853733 -250339931 - L1ME3A LINE L1 -1670 4500 3787 1755 175 0 40 chr1 31853748 31854073 -250339591 - AluJb SINE Alu 0 312 1 454 305 0 81 chr1 31854073 31854270 -250339394 - L1ME3A LINE L1 -2643 3503 3323 2227 97 0 3 chr1 31854304 31854603 -250339061 - AluSx SINE Alu -11 301 4 447 248 9 9 chr1 31854625 31854734 -250338930 - MIR SINE MIR -60 148 40 2151 112 0 16 chr1 31855228 31855541 -250338123 + AluSx SINE Alu 2 309 -3 495 246 117 55 chr1 31855973 31856159 -250337505 + MIR SINE MIR 4 196 -62 298 226 283 19 chr1 31856363 31856469 -250337195 - MIR3 SINE MIR -64 144 11 516 329 96 0 chr1 31857282 31857501 -250336163 - MIR SINE MIR -22 240 1 530 296 7 0 chr1 31857542 31857694 -250335970 - MER103 DNA DNA -3 163 11 295 169 51 0 chr1 31857797 31857856 -250335808 + MIR SINE MIR 92 153 -55 509 276 6 6 chr1 31857856 31858012 -250335652 + L1MEc LINE L1 43 198 -6198 245 311 0 37 chr1 31858177 31858312 -250335352 - L2 LINE L2 -222 3050 2921 5921 122 108 31 chr1 31858458 31858835 -250334829 + Tigger3b DNA MER2_type 1 347 -2681 3566 60 0 0 chr1 31858835 31859265 -250334399 - L1PA5 LINE L1 0 6154 5725 5921 122 108 31 chr1 31859265 31859397 -250334267 + Tigger3b DNA MER2_type 347 467 -2561 330 26 0 0 chr1 31859397 31859436 -250334228 + (TG)n Simple_repeat Simple_repeat 2 40 0 5921 122 108 31 chr1 31859436 31859801 -250333863 + Tigger3b DNA MER2_type 467 802 -2226 2222 97 0 3 chr1 31859801 31860100 -250333564 - AluSg SINE Alu -12 298 1 5921 122 108 31 chr1 31860100 31860363 -250333301 + Tigger3b DNA MER2_type 802 1228 -3 297 350 58 0 chr1 31860833 31860953 -250332711 - MIR3 SINE MIR 0 208 82 575 301 88 5 chr1 31862211 31862427 -250331237 - MIR SINE MIR -8 254 21 879 259 4 32 chr1 31863130 31863377 -250330287 - MIR SINE MIR 0 262 23 541 333 34 58 chr1 31863580 31863992 -250329672 - L2 LINE L2 0 3272 2871 201 74 0 0 chr1 31864414 31864441 -250329223 + (TCC)n Simple_repeat Simple_repeat 3 29 0 222 167 30 30 chr1 31864442 31864508 -250329156 + (TCTCTG)n Simple_repeat Simple_repeat 5 70 0 2410 78 13 0 chr1 31865001 31865308 -250328356 - AluSq SINE Alu -2 311 1 1070 128 53 88 chr1 31865371 31865566 -250328098 - AluJo SINE Alu -10 302 115 1724 163 7 0 chr1 31865566 31865848 -250327816 + AluJb SINE Alu 29 312 0 1070 128 53 88 chr1 31865848 31865878 -250327786 - AluJo SINE Alu -197 115 85 1446 125 9 30 chr1 31865993 31866225 -250327439 + AluJo SINE Alu 1 227 -85 219 258 30 15 chr1 31866384 31866450 -250327214 - MIR SINE MIR -93 169 103 347 226 226 15 chr1 31866475 31866608 -250327056 + MER5A DNA MER1_type 27 187 -2 192 318 0 15 chr1 31866617 31866683 -250326981 - MIR SINE MIR -111 97 33 866 286 13 9 chr1 31866807 31867034 -250326630 - MIR SINE MIR 0 262 35 190 305 49 37 chr1 31869463 31869545 -250324119 - MIR SINE MIR -81 127 45 501 283 31 25 chr1 31869593 31869752 -250323912 + MIR SINE MIR 86 245 -17 1746 225 86 77 chr1 31870705 31870825 -250322839 - L1ME3A LINE L1 -10 6160 6043 1686 189 3 0 chr1 31870825 31871116 -250322548 + AluJo SINE Alu 1 292 -20 1746 225 86 77 chr1 31871116 31871657 -250322007 - L1ME3A LINE L1 -127 6043 5493 2163 108 0 3 chr1 31871835 31872130 -250321534 - AluSx SINE Alu -18 294 1 249 119 0 0 chr1 31873414 31873456 -250320208 + (TG)n Simple_repeat Simple_repeat 2 43 0 473 328 29 18 chr1 31873576 31873747 -250319917 + MIR SINE MIR 4 176 -86 938 300 184 13 chr1 31873747 31874197 -250319467 - MLT1K LTR MaLR 0 588 62 488 282 74 5 chr1 31874636 31874824 -250318840 - MIR SINE MIR -30 232 23 294 228 0 63 chr1 31874870 31874949 -250318715 + MIR SINE MIR 109 182 -80 616 300 150 17 chr1 31877285 31877638 -250316026 - L2 LINE L2 -4 3309 2910 379 243 98 7 chr1 31878129 31878267 -250315397 + MIR3 SINE MIR 14 168 -40 1710 150 3 56 chr1 31878272 31878592 -250315072 - AluJb SINE Alu -9 303 1 387 328 0 23 chr1 31878688 31878816 -250314848 - MIR SINE MIR -131 131 7 471 301 27 33 chr1 31878851 31879034 -250314630 + MIR SINE MIR 57 238 -24 322 350 70 27 chr1 31879518 31879849 -250313815 - L2 LINE L2 -49 3223 2879 301 291 126 0 chr1 31879916 31880019 -250313645 - MIR SINE MIR -64 144 29 186 143 0 0 chr1 31880024 31880059 -250313605 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 24 0 0 chr1 31881398 31881440 -250312224 + (TCCA)n Simple_repeat Simple_repeat 3 44 0 402 277 17 8 chr1 31883905 31884024 -250309640 + MIR SINE MIR 93 212 -50 228 246 14 29 chr1 31884152 31884221 -250309443 + MIR3 SINE MIR 113 180 -28 289 292 204 0 chr1 31884426 31884563 -250309101 + MIR SINE MIR 79 243 -19 390 265 76 0 chr1 31884669 31884801 -250308863 + MIR3 SINE MIR 3 144 -64 658 261 107 56 chr1 31885057 31885451 -250308213 + MLT1H LTR MaLR 136 549 0 217 337 79 0 chr1 31885505 31885594 -250308070 + L2 LINE L2 3161 3256 -16 217 283 40 30 chr1 31885793 31885892 -250307772 + MIR SINE MIR 149 248 -14 568 348 9 18 chr1 31885958 31886182 -250307482 - MIR SINE MIR -33 229 8 587 153 0 0 chr1 31886957 31887055 -250306609 - MIR SINE MIR -92 170 73 550 290 58 71 chr1 31887067 31887617 -250306047 + L2 LINE L2 2679 3271 -1 311 206 0 16 chr1 31887616 31887679 -250305985 - MIR SINE MIR -187 75 14 * 410 285 86 7 chr1 31887704 31887855 -250305809 + MIR3 SINE MIR 27 189 -19 323 310 70 25 chr1 31888050 31888208 -250305456 - MIR SINE MIR -76 186 22 431 315 43 6 chr1 31888789 31888951 -250304713 - MIR SINE MIR -76 186 19 756 207 9 73 chr1 31889514 31889732 -250303932 + LTR41 LTR ERVL 3 230 -565 418 260 138 6 chr1 31890074 31890255 -250303409 + LTR50 LTR ERVL 589 793 -2 10133 302 56 28 chr1 31890563 31892029 -250301635 + ERVL LTR ERVL 352 1774 -3990 2076 78 11 4 chr1 31892029 31892310 -250301354 + L1PB2 LINE L1 5867 6149 -2 10133 302 56 28 chr1 31892310 31894985 -250298679 + ERVL LTR ERVL 1774 4686 -1078 254 341 98 12 chr1 31895127 31895300 -250298364 - LTR41 LTR ERVL -80 693 506 8204 48 3 0 chr1 31895333 31896299 -250297365 - LTR5 LTR ERVK 0 969 1 494 204 136 8 chr1 31896613 31896745 -250296919 - LTR41 LTR ERVL -624 149 1 1892 303 37 15 chr1 31896745 31897396 -250296268 + ERVL LTR ERVL 4811 5475 -289 2348 84 0 0 chr1 31897406 31897714 -250295950 - AluY SINE Alu -3 308 1 1598 113 0 5 chr1 31897716 31897938 -250295726 - L1PA15 LINE L1 -2 6163 5943 474 219 70 16 chr1 31898249 31898377 -250295287 + LTR41 LTR ERVL 19 153 -620 2116 109 0 0 chr1 31898400 31898717 -250294947 - AluSx SINE Alu 0 317 1 276 203 43 0 chr1 31898722 31898791 -250294873 + LTR50 LTR ERVL 714 785 -10 283 179 75 15 chr1 31899002 31899069 -250294595 + MIR SINE MIR 23 93 -115 933 159 139 50 chr1 31899284 31899485 -250294179 + MER20 DNA MER1_type 1 219 0 358 341 39 0 chr1 31899487 31899616 -250294048 - MIR3 SINE MIR -68 140 7 195 299 45 30 chr1 31900301 31900435 -250293229 + L2 LINE L2 2909 3044 -228 361 312 105 72 chr1 31900435 31900881 -250292783 + LTR16C LTR ERVL 1 461 -30 253 338 60 40 chr1 31901049 31901200 -250292464 + L2 LINE L2 3117 3270 -2 377 159 0 127 chr1 31901856 31901982 -250291682 - MIR SINE MIR -119 143 34 227 230 79 31 chr1 31902100 31902222 -250291442 + MIR SINE MIR 33 192 -70 197 196 18 0 chr1 31902614 31902670 -250290994 + GA-rich Low_complexity Low_complexity 1 57 0 528 337 106 5 chr1 31902751 31902950 -250290714 + MIR SINE MIR 28 246 -16 2376 88 0 0 chr1 31903222 31903527 -250290137 + AluSx SINE Alu 1 305 -7 219 333 12 0 chr1 31903696 31903777 -250289887 - MIR SINE MIR -82 126 45 234 241 0 0 chr1 31904308 31904362 -250289302 + (CA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr1 31904976 31905000 -250288664 + AT_rich Low_complexity Low_complexity 1 24 0 2241 103 0 0 chr1 31905514 31905814 -250287850 - AluSg SINE Alu -10 300 1 2076 139 7 0 chr1 31905821 31906284 -250287380 - AluSx SINE Alu 0 465 1 279 292 62 0 chr1 31906708 31906804 -250286860 - L2 LINE L2 -25 3247 3146 265 296 20 10 chr1 31906820 31906918 -250286746 - MIR SINE MIR -81 127 29 522 349 81 4 chr1 31907373 31907634 -250286030 - MLT1K LTR MaLR -290 298 18 343 314 17 0 chr1 31908923 31909041 -250284623 + L2 LINE L2 2933 3052 -220 189 111 0 0 chr1 31909075 31909102 -250284562 + L2 LINE L2 3136 3162 -110 527 344 18 9 chr1 31909227 31909454 -250284210 - MIR SINE MIR 0 262 34 542 239 72 36 chr1 31909462 31909629 -250284035 - L2 LINE L2 -19 3294 3122 1577 133 162 44 chr1 31909637 31909976 -250283688 - MLT1B LTR MaLR -2 388 10 272 304 179 5 chr1 31910014 31910198 -250283466 - L2 LINE L2 -280 3033 2818 346 308 36 0 chr1 31910275 31910417 -250283247 - MIR3 SINE MIR -37 171 20 2120 119 10 6 chr1 31910891 31911202 -250282462 + AluSx SINE Alu 1 312 0 288 282 38 38 chr1 31911204 31911335 -250282329 - MIR SINE MIR -129 133 3 353 183 0 0 chr1 31911375 31911435 -250282229 + MIR SINE MIR 90 149 -59 288 309 45 0 chr1 31911566 31911676 -250281988 - MIR SINE MIR -89 173 59 240 276 92 31 chr1 31911812 31912008 -250281656 + L2 LINE L2 2770 2977 -337 514 333 168 8 chr1 31912195 31912577 -250281087 + L2 LINE L2 2871 3313 0 691 231 104 44 chr1 31913713 31913964 -250279700 + MLT1K LTR MaLR 322 587 -1 347 209 198 0 chr1 31914218 31914309 -250279355 - MIR SINE MIR -113 149 41 760 272 104 21 chr1 31914440 31914815 -250278849 + L2 LINE L2 2002 2407 -907 421 213 46 2 chr1 31915023 31915150 -250278514 - L1MC3 LINE L1 0 7995 7679 2318 86 0 0 chr1 31915155 31915457 -250278207 - AluY SINE Alu -9 302 1 332 253 124 59 chr1 31915521 31915707 -250277957 + MER102a DNA MER1_type 116 313 -17 317 231 0 0 chr1 31915789 31915854 -250277810 - L2 LINE L2 -1 3271 3207 580 284 138 0 chr1 31916343 31916561 -250277103 - MIR SINE MIR -4 258 11 8098 48 11 0 chr1 31916584 31917542 -250276122 + LTR5 LTR ERVK 1 969 0 2789 92 2 20 chr1 31917611 31918014 -250275650 + L1MA2 LINE L1 5909 6304 0 184 378 14 0 chr1 31918028 31918102 -250275562 + MIR SINE MIR 186 260 -2 265 203 34 0 chr1 31918758 31918817 -250274847 + MIR3 SINE MIR 108 168 -40 287 325 24 16 chr1 31919907 31920030 -250273634 + MIR SINE MIR 21 144 -64 888 153 0 0 chr1 31920101 31920232 -250273432 - FLAM_C SINE Alu -2 131 1 354 340 93 34 chr1 31920300 31920591 -250273073 - L2 LINE L2 0 3313 3006 514 261 0 9 chr1 31920621 31920736 -250272928 + MER81 DNA DNA 1 114 0 935 235 38 0 chr1 31920850 31921063 -250272601 - MIR SINE MIR -29 233 13 263 295 10 115 chr1 31921087 31921287 -250272377 - MIR SINE MIR 0 262 84 797 147 0 33 chr1 31922435 31922619 -250271045 + (TTCC)n Simple_repeat Simple_repeat 2 179 0 640 89 20 0 chr1 31922617 31922718 -250270946 + (TC)n Simple_repeat Simple_repeat 2 104 0 * 192 162 27 0 chr1 31923117 31923154 -250270510 + MIR3 SINE MIR 168 205 -3 254 248 31 47 chr1 31923628 31923757 -250269907 - L2 LINE L2 -310 2962 2836 2078 273 78 31 chr1 31924354 31925007 -250268657 - MER115 DNA AcHobo -5 688 5 1864 154 15 94 chr1 31925519 31925921 -250267743 - MLT1A2 LTR MaLR -4 370 1 239 143 0 0 chr1 31926098 31926140 -250267524 + Alu SINE Alu 259 300 -1 675 337 16 0 chr1 31926403 31926646 -250267018 - MIR SINE MIR -14 248 2 550 223 108 73 chr1 31927443 31927724 -250265940 - MLT1H LTR MaLR -197 352 21 252 318 84 19 chr1 31927745 31927852 -250265812 + MIR3 SINE MIR 88 201 -7 478 320 115 8 chr1 31928798 31929032 -250264632 - MIR SINE MIR -1 261 3 4274 139 27 14 chr1 31929917 31930560 -250263104 - L1MA4 LINE L1 -159 6323 5667 1658 107 5 0 chr1 31930560 31930775 -250262889 - AluSg/x SINE Alu -18 294 79 4274 139 27 14 chr1 31930775 31930902 -250262762 - L1MA4 LINE L1 -815 5667 5543 627 126 19 0 chr1 31930902 31931005 -250262659 - AluYb8 SINE Alu 0 318 214 15026 174 28 26 chr1 31931008 31933328 -250260336 - L1MA4 LINE L1 -781 5547 3234 3688 54 2 5 chr1 31933328 31933773 -250259891 - MLT2A1 LTR ERVL 0 444 1 15026 174 28 26 chr1 31933773 31934425 -250259239 - L1MA4 LINE L1 -3094 3234 2585 2071 109 43 23 chr1 31934425 31934728 -250258936 - AluSg SINE Alu -1 309 1 15026 174 28 26 chr1 31934728 31934877 -250258787 - L1MA4 LINE L1 -3743 2585 2438 2347 109 0 3 chr1 31934877 31935181 -250258483 - AluSx SINE Alu -9 303 1 15026 174 28 26 chr1 31935181 31937589 -250256075 - L1MA4 LINE L1 -3890 2438 2 289 337 107 18 chr1 31937672 31937841 -250255823 - MER5A DNA MER1_type -4 185 2 556 289 108 54 chr1 31937901 31938309 -250255355 + MLT1J2 LTR MaLR 20 449 -1 1094 161 0 0 chr1 31938398 31938559 -250255105 + AluSp SINE Alu 136 296 -17 1756 180 0 47 chr1 31938606 31938923 -250254741 - AluJb SINE Alu -10 302 1 22 70 0 0 chr1 31939176 31939219 -250254445 + AT_rich Low_complexity Low_complexity 1 43 0 489 273 8 52 chr1 31939614 31939794 -250253870 + MIR3 SINE MIR 15 188 -20 509 316 87 10 chr1 31940046 31940252 -250253412 - MIR SINE MIR -6 256 35 550 237 167 32 chr1 31941462 31941648 -250252016 + MIR SINE MIR 20 230 -32 275 304 127 57 chr1 31942102 31942385 -250251279 - L2 LINE L2 -2 3270 2968 623 181 136 4 chr1 31942392 31942591 -250251073 - MLT1H1 LTR MaLR 0 555 292 277 277 24 0 chr1 31942628 31942711 -250250953 - MLT1H1 LTR MaLR -304 286 202 3199 145 23 33 chr1 31942713 31942893 -250250771 + MER49 LTR ERV1 1 181 -742 2372 84 0 7 chr1 31942893 31943192 -250250472 - AluY SINE Alu -14 297 1 3199 145 23 33 chr1 31943192 31943584 -250250080 + MER49 LTR ERV1 181 567 -356 1121 212 9 0 chr1 31943580 31943802 -250249862 + MER49 LTR ERV1 686 909 -14 * 1884 154 7 10 chr1 31943802 31944095 -250249569 - AluJo SINE Alu -16 296 5 609 292 39 0 chr1 31944145 31944323 -250249341 - MLT1H1 LTR MaLR -370 185 1 285 331 24 16 chr1 31944486 31944613 -250249051 - L2 LINE L2 -212 3060 2933 222 281 0 24 chr1 31944914 31944996 -250248668 - L2 LINE L2 -685 2629 2550 721 239 109 38 chr1 31945012 31945250 -250248414 - MIR SINE MIR -2 260 6 302 247 124 0 chr1 31945594 31945683 -250247981 - MIR SINE MIR -88 120 21 702 237 114 27 chr1 31945691 31945766 -250247898 + MIR SINE MIR 19 86 -176 2689 97 8 0 chr1 31945766 31946137 -250247527 - THE1C LTR MaLR -1 374 1 702 237 114 27 chr1 31946137 31946280 -250247384 + MIR SINE MIR 86 256 -6 960 279 48 4 chr1 31946321 31946550 -250247114 + MIR SINE MIR 14 252 -10 619 230 112 1 chr1 31946876 31947071 -250246593 - MIR SINE MIR -20 242 29 354 227 136 9 chr1 31947342 31947452 -250246212 + MIR3 SINE MIR 40 163 -45 355 233 135 61 chr1 31947483 31947646 -250246018 - MIR SINE MIR -13 249 75 271 323 64 32 chr1 31948183 31948403 -250245261 + MIR SINE MIR 14 240 -22 238 325 36 12 chr1 31948603 31948686 -250244978 - MIR SINE MIR -70 192 108 482 318 77 0 chr1 31948792 31949012 -250244652 - MIR SINE MIR -12 250 14 241 270 30 157 chr1 31949931 31950112 -250243552 + L2 LINE L2 3072 3220 -52 477 110 0 0 chr1 31950112 31950185 -250243479 + (TGAA)n Simple_repeat Simple_repeat 4 76 0 241 270 30 157 chr1 31950185 31950233 -250243431 + L2 LINE L2 3220 3272 0 642 258 58 51 chr1 31950248 31950523 -250243141 + L3 LINE CR1 1251 1527 -50 285 320 8 31 chr1 31950827 31950955 -250242709 + MIR SINE MIR 24 148 -60 362 277 9 45 chr1 31950995 31951107 -250242557 + MIR SINE MIR 80 187 -75 416 135 14 0 chr1 31951158 31951232 -250242432 + CT-rich Low_complexity Low_complexity 3 77 0 2208 108 26 10 chr1 31951278 31951583 -250242081 + AluSg SINE Alu 1 310 0 252 86 0 0 chr1 31952487 31952522 -250241142 + (TC)n Simple_repeat Simple_repeat 2 36 0 365 0 22 0 chr1 31952523 31952568 -250241096 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 299 108 19 chr1 31952961 31953118 -250240546 - MIR SINE MIR -61 147 20 587 240 112 52 chr1 31953765 31953998 -250239666 + MIR SINE MIR 16 262 0 536 260 97 7 chr1 31954360 31954514 -250239150 - MIR3 SINE MIR -28 180 13 187 423 0 0 chr1 31955301 31955379 -250238285 + MIR3 SINE MIR 82 159 -49 272 271 0 0 chr1 31955521 31955591 -250238073 + (TAA)n Simple_repeat Simple_repeat 2 71 0 365 253 58 0 chr1 31955651 31955738 -250237926 - MIR SINE MIR -44 218 127 443 242 84 140 chr1 31955763 31956034 -250237630 + LTR41 LTR ERVL 435 683 -90 955 187 6 6 chr1 31956034 31956200 -250237464 - FRAM SINE Alu 0 166 1 443 242 84 140 chr1 31956200 31956284 -250237380 + LTR41 LTR ERVL 683 770 -3 345 175 42 31 chr1 31956339 31956432 -250237232 - MER58 DNA MER1_type -109 106 1 2061 119 35 91 chr1 31956448 31956876 -250236788 + MSTA LTR MaLR 1 404 -24 2674 129 2 0 chr1 31956887 31957298 -250236366 + MSTA-int LTR MaLR 1 412 -1239 13302 36 2 0 chr1 31957311 31959659 -250234005 - L1PA5 LINE L1 -11 6143 3793 357 250 12 101 chr1 31959806 31959974 -250233690 - MLT1J LTR MaLR -203 308 156 367 301 34 41 chr1 31960227 31960373 -250233291 - L1ME4a LINE L1 -21 6100 5956 624 325 26 18 chr1 31960379 31960720 -250232944 - L1ME4a LINE L1 -213 5908 5565 325 150 0 33 chr1 31961727 31961811 -250231853 - AluJ/FRAM SINE Alu 0 308 227 528 202 40 16 chr1 31961833 31961957 -250231707 + MLT1E LTR MaLR 46 172 -421 916 278 92 27 chr1 31962070 31962441 -250231223 + MLT1E LTR MaLR 199 593 0 3872 177 37 55 chr1 31962502 31963693 -250229971 + L1MB8 LINE L1 4957 6145 -33 605 207 173 74 chr1 31963693 31963964 -250229700 + MLT1K LTR MaLR 290 587 -1 403 311 44 17 chr1 31963997 31964177 -250229487 - MIR SINE MIR -55 207 23 1156 185 41 53 chr1 31964661 31965017 -250228647 + MLT2D LTR ERVL 66 414 0 232 179 330 9 chr1 31965096 31965208 -250228456 + LTR16A1 LTR ERVL 305 452 -5 412 351 34 10 chr1 31965298 31965591 -250228073 + HERV16 LTR ERVL 117 416 -4580 826 326 74 35 chr1 31965621 31966364 -250227300 + HERV16 LTR ERVL 461 1232 -3764 2260 226 57 16 chr1 31966576 31967431 -250226233 + L1ME1 LINE L1 5145 5981 -185 227 316 26 26 chr1 31968323 31968437 -250225227 - MIR SINE MIR -20 242 129 290 233 122 56 chr1 31968927 31969084 -250224580 - MIR SINE MIR -62 146 1 275 235 0 15 chr1 31969202 31969270 -250224394 - MER96 DNA MER1_type? -26 149 83 278 311 123 9 chr1 31969865 31969971 -250223693 - MIR3 SINE MIR -9 199 82 211 262 95 19 chr1 31970626 31970735 -250222929 + MIR SINE MIR 12 136 -72 204 225 0 0 chr1 31971299 31971339 -250222325 + (TG)n Simple_repeat Simple_repeat 2 41 0 210 326 31 20 chr1 31972684 31972782 -250220882 - MIR3 SINE MIR -28 180 82 237 91 0 0 chr1 31972994 31973027 -250220637 - L2 LINE L2 -223 3049 3017 3701 104 5 61 chr1 31973490 31974048 -250219616 + MER1A DNA MER1_type 1 527 0 457 237 23 92 chr1 31974213 31974344 -250219320 + MIR SINE MIR 21 142 -120 337 235 56 112 chr1 31974421 31974600 -250219064 - MIR SINE MIR -4 258 90 663 267 83 5 chr1 31974602 31974819 -250218845 + L1MEc LINE L1 134 367 -6029 893 130 0 8 chr1 31974857 31974988 -250218676 + FRAM SINE Alu 35 164 -12 2739 275 69 3 chr1 31974999 31975918 -250217746 + L1MEc LINE L1 398 1376 -5020 2422 179 73 9 chr1 31975936 31976496 -250217168 + L1M4 LINE L1 4615 5210 -936 915 261 51 1 chr1 31976677 31976924 -250216740 - MIR SINE MIR 0 262 7 273 318 58 52 chr1 31976963 31977117 -250216547 - MIR SINE MIR -14 248 94 207 302 0 0 chr1 31978349 31978402 -250215262 + MIR3 SINE MIR 144 196 -12 469 241 48 8 chr1 31978609 31978793 -250214871 + MIR3 SINE MIR 5 192 -68 298 246 86 13 chr1 31979188 31979298 -250214366 + MIR SINE MIR 61 175 -78 273 248 8 94 chr1 31979323 31979440 -250214224 - L2 LINE L2 -6 3307 3201 259 278 33 0 chr1 31980480 31980570 -250213094 + MIR SINE MIR 100 192 -70 412 324 152 5 chr1 31980917 31981121 -250212543 - MIR SINE MIR -9 253 20 193 224 69 0 chr1 31981270 31981328 -250212336 + MIR SINE MIR 84 145 -63 486 363 42 29 chr1 31981375 31981615 -250212049 + MIR SINE MIR 8 250 -12 495 273 43 0 chr1 31982200 31982339 -250211325 - MIR3 SINE MIR -59 149 5 315 332 21 10 chr1 31982435 31982628 -250211036 - L2 LINE L2 -526 2788 2594 384 260 123 26 chr1 31982682 31982836 -250210828 - MIR SINE MIR -60 202 34 1090 245 95 25 chr1 31983177 31983545 -250210119 - MLT1I LTR MaLR 0 409 16 1131 279 82 43 chr1 31983555 31984513 -250209151 + L2 LINE L2 2309 3300 -13 207 0 0 0 chr1 31984513 31984536 -250209128 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 315 138 62 0 chr1 31985386 31985451 -250208213 - L1P LINE L1 -4215 1931 1863 * 4697 112 3 3 chr1 31985447 31986128 -250207536 - L1P LINE L1 -5465 681 1 2295 201 92 53 chr1 31986130 31986803 -250206861 + MST-int LTR MaLR 400 1098 -553 3466 293 65 39 chr1 31986803 31988110 -250205554 + ERVL LTR ERVL 1955 3295 -2469 493 265 61 44 chr1 31988216 31988397 -250205267 + MIR SINE MIR 2 185 -77 574 290 32 14 chr1 31988421 31988638 -250205026 - MIR SINE MIR -37 225 5 326 265 53 68 chr1 31988736 31988868 -250204796 + MER5A DNA MER1_type 57 186 -3 206 372 18 35 chr1 31988930 31989043 -250204621 + MIR SINE MIR 43 153 -55 212 237 0 0 chr1 31989088 31989126 -250204538 + MIR SINE MIR 50 87 -175 2464 86 0 0 chr1 31989128 31989429 -250204235 - AluY SINE Alu -10 301 1 369 269 56 0 chr1 31989430 31989538 -250204126 + MIR SINE MIR 72 185 -77 348 333 62 15 chr1 31989585 31989780 -250203884 + MIR SINE MIR 15 218 -44 21 36 0 0 chr1 31989797 31989825 -250203839 + AT_rich Low_complexity Low_complexity 1 28 0 305 353 69 6 chr1 31990829 31991002 -250202662 + MIR SINE MIR 51 234 -28 247 279 19 67 chr1 31991376 31991480 -250202184 - HAL1b LINE L1 -54 1294 1196 505 203 16 24 chr1 31992211 31992334 -250201330 - MIR SINE MIR -113 149 28 2308 69 39 20 chr1 31992784 31993089 -250200575 + AluY SINE Alu 1 311 0 439 251 69 35 chr1 31993282 31993513 -250200151 + L1ME4a LINE L1 5830 6068 -53 537 178 212 14 chr1 31993556 31993702 -250199962 - MIR SINE MIR -44 218 44 380 323 36 6 chr1 31994521 31994688 -250198976 - MIR SINE MIR -70 192 21 487 306 103 25 chr1 31994799 31995080 -250198584 + L2 LINE L2 3010 3312 -1 362 260 96 21 chr1 31995105 31995252 -250198412 - MIR SINE MIR -62 146 42 346 283 80 0 chr1 31996102 31996215 -250197449 - MIR SINE MIR -63 145 24 696 268 78 42 chr1 31996985 31997291 -250196373 - L2 LINE L2 -2 3311 2995 520 330 30 13 chr1 31997383 31997616 -250196048 + L2 LINE L2 2584 2820 -494 312 375 76 11 chr1 31997619 31997883 -250195781 + L2 LINE L2 2985 3265 -7 375 143 0 48 chr1 31999062 31999146 -250194518 + MLT1H-int LTR MaLR 1656 1735 0 438 169 52 0 chr1 31999146 31999223 -250194441 + MSTB1 LTR MaLR 1 81 -376 * 1107 153 41 29 chr1 31999213 31999455 -250194209 + MSTB1 LTR MaLR 184 428 -4 1402 258 26 54 chr1 31999460 31999899 -250193765 + MLT1H LTR MaLR 57 483 -66 1993 132 0 21 chr1 31999899 32000224 -250193440 - AluSx SINE Alu 0 319 1 1402 258 26 54 chr1 32000224 32000280 -250193384 + MLT1H LTR MaLR 483 539 -10 379 299 90 6 chr1 32000280 32000447 -250193217 - MIR SINE MIR -60 202 22 438 263 114 34 chr1 32000473 32000648 -250193016 + MER117 DNA MER1_type 3 191 -6 1291 270 128 63 chr1 32001905 32002548 -250191116 + HAL1b LINE L1 89 688 -660 2005 137 23 29 chr1 32002548 32002855 -250190809 + AluJo SINE Alu 2 306 -6 1291 270 128 63 chr1 32002855 32003387 -250190277 + HAL1b LINE L1 688 1341 -7 431 189 32 11 chr1 32003875 32003970 -250189694 - MIR SINE MIR -146 116 20 2371 100 3 0 chr1 32004100 32004400 -250189264 + AluSx SINE Alu 1 301 -11 236 286 87 48 chr1 32004598 32004724 -250188940 - L2 LINE L2 0 3272 3142 384 314 73 20 chr1 32004859 32005104 -250188560 - L2 LINE L2 -439 2875 2618 298 318 39 16 chr1 32005653 32005782 -250187882 - MIR SINE MIR -52 210 79 247 328 26 45 chr1 32005891 32006045 -250187619 - MIR SINE MIR -60 202 56 248 180 79 79 chr1 32006770 32006859 -250186805 + MIR SINE MIR 43 131 -77 309 267 58 0 chr1 32007211 32007297 -250186367 - MIR3 SINE MIR -6 202 112 665 281 158 42 chr1 32007354 32007853 -250185811 - MLT1K LTR MaLR -16 572 16 204 234 221 48 chr1 32007884 32008029 -250185635 - MIR SINE MIR -20 242 73 280 288 65 7 chr1 32008063 32008202 -250185462 - LTR16C LTR ERVL -154 337 191 2393 81 0 0 chr1 32008692 32008999 -250184665 + AluSx SINE Alu 1 307 0 529 282 66 42 chr1 32009067 32009354 -250184310 + LTR47B LTR ERVL 1 294 -149 978 188 0 70 chr1 32009359 32009572 -250184092 + LTR47B LTR ERVL 246 443 0 188 67 33 0 chr1 32009594 32009624 -250184040 + (TGGGGG)n Simple_repeat Simple_repeat 3 33 0 1752 123 119 0 chr1 32009764 32010033 -250183631 - AluSx SINE Alu -11 301 1 438 273 98 0 chr1 32010820 32010963 -250182701 + MIR SINE MIR 106 262 0 439 243 92 32 chr1 32012054 32012239 -250181425 + MLT1G LTR MaLR 388 583 -7 364 276 126 45 chr1 32012311 32012510 -250181154 + MIR SINE MIR 27 241 -21 278 203 14 14 chr1 32012649 32012718 -250180946 - L2 LINE L2 -31 3282 3214 225 358 12 0 chr1 32013472 32013553 -250180111 - MIR SINE MIR 0 262 181 232 292 14 0 chr1 32013563 32013635 -250180029 + MER94 DNA DNA 4 76 -58 340 339 58 26 chr1 32013655 32013968 -250179696 + L2 LINE L2 2991 3313 0 203 200 154 0 chr1 32014265 32014330 -250179334 + MIR SINE MIR 62 136 -72 377 309 24 0 chr1 32014766 32014889 -250178775 - L2 LINE L2 -13 3259 3134 3777 207 58 14 chr1 32015064 32016229 -250177435 - L1 LINE L1 -2361 4487 3168 833 102 0 90 chr1 32016222 32016499 -250177165 - L1MDb LINE L1 -5165 1242 783 * 504 216 17 26 chr1 32017732 32017848 -250175816 + MER94 DNA DNA 20 134 0 203 276 35 35 chr1 32017965 32018052 -250175612 - L2 LINE L2 0 3272 3186 952 278 196 11 chr1 32018889 32019271 -250174393 - MLT1K LTR MaLR 0 588 136 325 311 115 0 chr1 32020049 32020197 -250173467 - MIR SINE MIR -6 256 92 928 268 80 27 chr1 32020242 32020760 -250172904 + L2 LINE L2 2756 3300 -13 191 236 127 0 chr1 32020770 32020825 -250172839 + MIR SINE MIR 131 192 -70 693 284 109 31 chr1 32021084 32021433 -250172231 + MLT1I LTR MaLR 34 409 0 247 316 25 0 chr1 32021609 32021688 -250171976 + MIR SINE MIR 76 156 -106 407 201 7 89 chr1 32022455 32022550 -250171114 + MLT1J1 LTR MaLR 56 138 -271 1930 201 57 5 chr1 32022550 32022954 -250170710 - MSTB LTR MaLR 0 426 2 407 201 7 89 chr1 32022954 32022996 -250170668 + MLT1J1 LTR MaLR 138 182 -227 310 229 2 77 chr1 32023038 32023164 -250170500 + MLT1J2 LTR MaLR 370 450 0 365 274 71 0 chr1 32023174 32023287 -250170377 + L2 LINE L2 3193 3313 0 1572 176 115 40 chr1 32023873 32024298 -250169366 + MSTB2 LTR MaLR 1 457 0 656 265 44 5 chr1 32024501 32024705 -250168959 + MIR SINE MIR 3 214 -48 1800 175 34 11 chr1 32024953 32025331 -250168333 - MLT1B LTR MaLR 0 390 4 441 322 17 43 chr1 32025440 32025673 -250167991 - L2 LINE L2 -4 3268 3042 209 378 20 0 chr1 32025822 32025920 -250167744 - MIR SINE MIR -66 142 43 394 342 19 19 chr1 32026652 32026807 -250166857 - L3 LINE CR1 -142 1435 1281 309 230 40 0 chr1 32027265 32027339 -250166325 - MIR SINE MIR -90 118 42 489 124 26 88 chr1 32027852 32027914 -250165750 + MSTB2 LTR MaLR 1 54 -403 2388 94 0 7 chr1 32027914 32028221 -250165443 + AluY SINE Alu 1 305 -6 489 124 26 88 chr1 32028221 32028271 -250165393 + MSTB2 LTR MaLR 54 106 -351 231 188 0 59 chr1 32228295 32228396 -249965268 + C-rich Low_complexity Low_complexity 4 98 0 1624 104 0 30 chr1 32228847 32229078 -249964586 + AluSg/x SINE Alu 88 311 -1 1449 175 62 0 chr1 32229079 32229370 -249964294 + MER41C LTR ERV1 246 554 0 21 0 0 0 chr1 32229467 32229488 -249964176 + GC_rich Low_complexity Low_complexity 1 21 0 226 260 47 64 chr1 32229520 32229755 -249963909 - L2 LINE L2 -227 3045 2815 327 301 122 13 chr1 32229810 32229966 -249963698 - MIR SINE MIR -4 258 86 215 279 23 101 chr1 32230075 32230204 -249963460 - L2 LINE L2 -94 3219 3101 661 247 40 6 chr1 32230835 32231009 -249962655 + MIR SINE MIR 59 238 -24 241 295 70 0 chr1 32232479 32232608 -249961056 + L2 LINE L2 2836 2973 -299 210 335 53 41 chr1 32232996 32233166 -249960498 - MIR3 SINE MIR -7 201 30 339 323 22 62 chr1 32233307 32233533 -249960131 - MIR SINE MIR -40 222 6 283 309 85 48 chr1 32233807 32233995 -249959669 + MIR SINE MIR 1 195 -67 * 311 250 0 12 chr1 32233992 32234072 -249959592 - MIR SINE MIR -126 136 58 340 246 25 57 chr1 32234081 32234142 -249959522 + MIR SINE MIR 43 100 -162 2320 90 3 3 chr1 32234142 32234432 -249959232 - AluSg SINE Alu -20 290 1 340 246 25 57 chr1 32234432 32234492 -249959172 + MIR SINE MIR 100 160 -102 687 12 0 0 chr1 32235179 32235259 -249958405 + (AATAG)n Simple_repeat Simple_repeat 1 80 0 387 282 54 100 chr1 32235401 32235660 -249958004 - L2 LINE L2 -19 3253 3007 723 259 211 6 chr1 32235661 32235978 -249957686 + L2 LINE L2 2932 3313 0 252 228 0 0 chr1 32235995 32236052 -249957612 - FAM SINE Alu 0 179 123 386 271 31 0 chr1 32237782 32237911 -249955753 - Zaphod DNA AcHobo -10 4021 3889 723 261 44 26 chr1 32239694 32239920 -249953744 - MIR SINE MIR -27 235 6 362 244 47 58 chr1 32239923 32240095 -249953569 - L3 LINE CR1 -77 1500 1331 522 275 47 6 chr1 32240753 32240924 -249952740 - MIR SINE MIR -78 184 7 182 65 97 0 chr1 32240935 32240966 -249952698 - MIR3 SINE MIR -15 193 160 212 296 19 0 chr1 32241029 32241083 -249952581 + MER5B DNA MER1_type 1 55 -123 418 141 0 14 chr1 32241088 32241159 -249952505 - L1MD3 LINE L1 -1737 6258 6189 418 266 56 7 chr1 32241160 32241303 -249952361 + MIR SINE MIR 35 184 -78 350 221 18 145 chr1 32241312 32241477 -249952187 + MER5B DNA MER1_type 1 133 -45 6951 163 67 46 chr1 32241492 32243018 -249950646 + L1MC3 LINE L1 5486 7049 -736 478 0 32 0 chr1 32243018 32243080 -249950584 + (TAGA)n Simple_repeat Simple_repeat 1 64 0 6951 163 67 46 chr1 32243080 32243133 -249950531 + L1MC3 LINE L1 7049 7099 -686 4010 205 47 15 chr1 32243129 32244105 -249949559 - L1MEc LINE L1 -2824 4117 3111 * 827 193 28 41 chr1 32244104 32244177 -249949487 - L1MEc LINE L1 -5594 1528 1456 * 1502 224 100 3 chr1 32244177 32244538 -249949126 - MSTD LTR MaLR 0 396 1 827 193 28 41 chr1 32244538 32244682 -249948982 - L1MEc LINE L1 -5666 1456 1314 870 310 57 6 chr1 32244697 32245029 -249948635 - L1MEc LINE L1 -6013 1109 761 199 182 327 0 chr1 32245061 32245116 -249948548 - MIR SINE MIR -55 153 81 325 280 102 0 chr1 32245996 32246114 -249947550 - L2 LINE L2 -5 3267 3138 1095 254 126 20 chr1 32246926 32247332 -249946332 - L1MEc LINE L1 -5956 467 19 332 191 0 59 chr1 32247436 32247504 -249946160 - L2 LINE L2 -1 3312 3249 330 253 30 20 chr1 32247546 32247645 -249946019 - MIR SINE MIR -73 135 36 812 311 63 31 chr1 32247806 32248294 -249945370 + L1ME4a LINE L1 5475 5978 -143 318 274 250 24 chr1 32248338 32248506 -249945158 - MIR SINE MIR -18 244 39 330 26 0 0 chr1 32249710 32249749 -249943915 + (TG)n Simple_repeat Simple_repeat 2 40 0 426 261 50 56 chr1 32249753 32249933 -249943731 - MIR SINE MIR -55 207 29 1234 345 48 20 chr1 32250471 32251415 -249942249 - ERVL LTR ERVL -628 5136 4167 854 229 91 5 chr1 32251601 32251811 -249941853 - MIR SINE MIR -18 244 17 463 284 82 58 chr1 32252048 32252291 -249941373 - L2 LINE L2 -17 3255 3007 243 296 88 40 chr1 32252273 32252398 -249941266 + L3 LINE CR1 1444 1574 -3 * 278 259 86 0 chr1 32253142 32253223 -249940441 + MIR SINE MIR 45 132 -76 621 286 108 0 chr1 32253345 32253548 -249940116 - MIR SINE MIR -35 227 3 2296 108 0 19 chr1 32253626 32253941 -249939723 - AluSx SINE Alu -3 309 1 393 269 8 31 chr1 32253996 32254126 -249939538 + L2 LINE L2 2919 3045 -227 2016 106 3 21 chr1 32254943 32255226 -249938438 + AluSp SINE Alu 1 278 -35 183 333 121 0 chr1 32256056 32256155 -249937509 + MIR SINE MIR 117 227 -35 233 143 20 61 chr1 32256343 32256392 -249937272 - MIR SINE MIR -55 153 107 506 284 71 36 chr1 32256392 32256617 -249937047 + MIR SINE MIR 4 236 -26 233 100 50 17 chr1 32256644 32256704 -249936960 + (TAA)n Simple_repeat Simple_repeat 3 64 0 2424 100 0 3 chr1 32257192 32257502 -249936162 + AluSg SINE Alu 1 309 -1 2345 102 0 3 chr1 32258576 32258881 -249934783 - AluSq SINE Alu -9 304 1 742 256 31 15 chr1 32258926 32259121 -249934543 + MIR3 SINE MIR 11 208 0 1542 129 209 12 chr1 32260111 32260437 -249933227 + MSTA LTR MaLR 1 390 -38 191 333 51 8 chr1 32260441 32260558 -249933106 - L2 LINE L2 -39 3233 3112 427 250 134 43 chr1 32260636 32260800 -249932864 - MIR SINE MIR -21 241 63 549 318 153 7 chr1 32261092 32261366 -249932298 + MLT1K LTR MaLR 86 399 -189 231 328 0 0 chr1 32261380 32261441 -249932223 + (TG)n Simple_repeat Simple_repeat 1 61 0 276 263 95 11 chr1 32261558 32261653 -249932011 + MLT1K LTR MaLR 447 549 -39 533 210 48 8 chr1 32262115 32262239 -249931425 - MIR SINE MIR -120 142 14 211 242 33 44 chr1 32262280 32262371 -249931293 - L2 LINE L2 -190 3082 2993 396 214 270 0 chr1 32264115 32264241 -249929423 + MER5A DNA MER1_type 9 168 -21 231 258 32 16 chr1 32264304 32264366 -249929298 + MIR SINE MIR 86 148 -114 * 364 290 40 32 chr1 32264365 32264489 -249929175 - L2 LINE L2 0 3272 3148 385 193 18 0 chr1 32264685 32264766 -249928898 - MIR SINE MIR -60 148 65 349 281 37 22 chr1 32264945 32265080 -249928584 + MIR SINE MIR 58 194 -68 287 336 122 17 chr1 32265112 32265457 -249928207 + L2 LINE L2 2928 3308 -5 494 233 139 67 chr1 32265479 32265864 -249927800 - MLT1J2 LTR MaLR 0 450 75 335 188 0 16 chr1 32266374 32266438 -249927226 - MIR SINE MIR -114 148 86 340 313 35 35 chr1 32266991 32267135 -249926529 + MIR SINE MIR 24 167 -95 1600 224 12 50 chr1 32267238 32267738 -249925926 - L1ME1 LINE L1 -3 6232 5752 * 6114 249 72 12 chr1 32267737 32270646 -249923018 - L1ME1 LINE L1 -3141 3074 27 399 321 28 0 chr1 32271389 32271498 -249922166 - MIR SINE MIR -115 147 36 4835 159 58 10 chr1 32271646 32272560 -249921104 + L1MB3 LINE L1 24 981 -5403 828 210 78 72 chr1 32272564 32272616 -249921048 - MSTC LTR MaLR 0 428 378 426 20 0 0 chr1 32272616 32272667 -249920997 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2110 137 3 0 chr1 32272667 32272959 -249920705 - AluSx SINE Alu -19 293 1 828 210 78 72 chr1 32272959 32273292 -249920372 - MSTC LTR MaLR -49 379 3 3159 155 58 5 chr1 32273293 32273925 -249919739 + L1MB3 LINE L1 982 1647 -4737 9554 203 45 17 chr1 32273932 32276763 -249916901 + L1MB3 LINE L1 2801 5747 -672 342 0 0 0 chr1 32276763 32276801 -249916863 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 9554 203 45 17 chr1 32276801 32277492 -249916172 + L1MB3 LINE L1 5747 6417 -2 473 239 0 8 chr1 32277768 32277885 -249915779 - MLT1H LTR MaLR -395 154 39 6645 27 0 0 chr1 32277922 32278726 -249914938 - L1PA2 LINE L1 0 6155 5352 347 243 81 104 chr1 32278771 32278944 -249914720 + L2 LINE L2 2926 3094 -178 213 265 0 0 chr1 32279105 32279154 -249914510 + GA-rich Low_complexity Low_complexity 2 50 0 909 208 44 35 chr1 32279777 32280003 -249913661 - MIR SINE MIR -23 239 12 848 289 115 32 chr1 32280024 32280402 -249913262 - L2 LINE L2 -3 3310 2884 2674 99 39 51 chr1 32280402 32280443 -249913221 - MSTA LTR MaLR 0 428 388 2187 101 18 3 chr1 32280443 32280752 -249912912 + AluSx SINE Alu 1 313 0 2674 99 39 51 chr1 32280752 32281141 -249912523 - MSTA LTR MaLR -40 388 1 848 289 115 32 chr1 32281141 32281230 -249912434 - L2 LINE L2 -429 2884 2804 984 247 119 31 chr1 32281244 32281721 -249911943 + LTR33 LTR ERVL 1 519 -2 511 298 53 14 chr1 32281742 32281950 -249911714 - L2 LINE L2 -534 2780 2565 462 221 87 16 chr1 32282567 32282665 -249910999 + MIR SINE MIR 92 202 -60 2598 137 21 19 chr1 32282665 32283090 -249910574 + MSTB LTR MaLR 1 426 0 462 221 87 16 chr1 32283090 32283118 -249910546 + MIR SINE MIR 202 227 -35 548 282 67 50 chr1 32284112 32284470 -249909194 - L2 LINE L2 -2 3311 2948 246 286 0 0 chr1 32284705 32284761 -249908903 + MIR3 SINE MIR 142 197 -11 316 322 8 0 chr1 32285763 32285881 -249907783 - MLT1K LTR MaLR -328 260 142 282 303 61 0 chr1 32286310 32286409 -249907255 + L2 LINE L2 3205 3309 -4 192 196 22 0 chr1 32286554 32286600 -249907064 + MIR SINE MIR 98 144 -118 225 0 0 0 chr1 32286836 32286861 -249906803 + (A)n Simple_repeat Simple_repeat 1 25 0 1141 284 47 21 chr1 32287276 32287702 -249905962 + L2 LINE L2 2830 3266 -47 213 265 131 37 chr1 32287992 32288113 -249905551 - MIR SINE MIR -65 143 10 21 0 0 0 chr1 32288178 32288199 -249905465 + AT_rich Low_complexity Low_complexity 1 21 0 323 239 0 0 chr1 32288253 32288320 -249905344 - MIR SINE MIR -84 178 112 2221 98 0 41 chr1 32288459 32288776 -249904888 + AluSx SINE Alu 1 304 -8 186 250 0 21 chr1 32289554 32289602 -249904062 - MIR SINE MIR 0 262 216 * 222 176 0 0 chr1 32289574 32289608 -249904056 - L2 LINE L2 -25 3288 3255 266 202 12 60 chr1 32289625 32289709 -249903955 - MER116 DNA Mariner 0 80 1 234 184 0 0 chr1 32289761 32289799 -249903865 - MIR SINE MIR -62 146 109 2076 122 42 50 chr1 32290432 32290810 -249902854 + THE1C LTR MaLR 1 375 0 848 166 36 57 chr1 32290955 32291148 -249902516 + MER53 DNA DNA 1 189 0 241 156 22 0 chr1 32291365 32291410 -249902254 - MER58A DNA MER1_type -1 223 178 52 58 0 0 chr1 32291415 32291502 -249902162 + AT_rich Low_complexity Low_complexity 1 87 0 864 222 11 5 chr1 32291502 32291687 -249901977 - MER58A DNA MER1_type -37 187 2 189 348 11 34 chr1 32291815 32291904 -249901760 + MIR3 SINE MIR 68 154 -54 548 261 55 6 chr1 32292923 32293088 -249900576 + MIR SINE MIR 70 242 -20 185 370 167 10 chr1 32293116 32293308 -249900356 - MIR SINE MIR -15 247 26 283 171 26 0 chr1 32293328 32293404 -249900260 + CT-rich Low_complexity Low_complexity 1 78 0 296 276 9 21 chr1 32293635 32293741 -249899923 + MIR SINE MIR 10 113 -95 616 288 83 38 chr1 32293933 32294305 -249899359 + MLT1I LTR MaLR 21 409 0 357 119 24 24 chr1 32294423 32294507 -249899157 + GA-rich Low_complexity Low_complexity 1 84 0 434 304 73 50 chr1 32294546 32294766 -249898898 + MIR SINE MIR 9 233 -29 232 338 0 12 chr1 32295343 32295423 -249898241 + MIR SINE MIR 37 115 -147 304 203 0 17 chr1 32295988 32296047 -249897617 - L2 LINE L2 -63 3250 3193 331 267 190 17 chr1 32296050 32296166 -249897498 + L2 LINE L2 3177 3312 -1 198 217 0 83 chr1 32296910 32296970 -249896694 - MIR SINE MIR -63 199 145 727 282 75 18 chr1 32297315 32297542 -249896122 + MIR SINE MIR 20 259 -3 370 224 13 0 chr1 32297551 32297619 -249896045 + MLT1E2 LTR MaLR 3 71 -434 870 97 0 0 chr1 32297619 32297743 -249895921 + MSTB1 LTR MaLR 1 124 -302 2370 85 3 0 chr1 32297753 32298047 -249895617 + AluSg SINE Alu 1 295 -15 1150 131 113 9 chr1 32298050 32298272 -249895392 + MSTB1 LTR MaLR 188 432 0 1512 251 91 43 chr1 32298272 32298810 -249894854 + MLT1E2 LTR MaLR 63 626 0 227 260 14 0 chr1 32300041 32300114 -249893550 + L2 LINE L2 2313 2386 -928 396 250 37 9 chr1 32300727 32300835 -249892829 + MIR SINE MIR 25 136 -72 296 292 62 0 chr1 32301171 32301267 -249892397 - MIR SINE MIR -47 215 114 327 209 0 55 chr1 32301276 32301367 -249892297 - MIR3 SINE MIR -28 180 95 435 331 21 0 chr1 32301717 32301859 -249891805 - L2 LINE L2 -480 2834 2690 317 198 93 23 chr1 32302078 32302164 -249891500 - L2 LINE L2 -21 3292 3201 400 307 53 26 chr1 32302220 32302409 -249891255 + MIR SINE MIR 23 216 -46 587 236 70 20 chr1 32303666 32303865 -249889799 - Charlie8 DNA MER1_type -2202 215 7 399 177 0 0 chr1 32303956 32304052 -249889612 + CT-rich Low_complexity Low_complexity 1 96 0 399 313 122 17 chr1 32304328 32304558 -249889106 - MIR SINE MIR -6 256 3 356 254 97 22 chr1 32304586 32304720 -249888944 - L2 LINE L2 -262 3010 2867 355 252 19 9 chr1 32304776 32304883 -249888781 - MLT1K LTR MaLR 0 588 481 422 148 0 23 chr1 32304922 32305010 -249888654 + (GGA)n Simple_repeat Simple_repeat 3 88 0 787 281 108 0 chr1 32305031 32305262 -249888402 - MIR SINE MIR -3 259 4 186 381 48 0 chr1 32305322 32305406 -249888258 - L2 LINE L2 -536 2778 2691 487 218 165 38 chr1 32306409 32306542 -249887122 - L2 LINE L2 -1 3271 3122 211 324 181 30 chr1 32306698 32307324 -249886340 + L2 LINE L2 2371 3107 -165 624 235 102 45 chr1 32307389 32307653 -249886011 - MLT1J2 LTR MaLR -118 332 54 1629 203 79 40 chr1 32307723 32308070 -249885594 - MLT1C LTR MaLR -4 463 94 2352 99 0 3 chr1 32308070 32308372 -249885292 - AluSc SINE Alu -7 302 2 1629 203 79 40 chr1 32308372 32308468 -249885196 - MLT1C LTR MaLR -373 94 3 250 222 133 0 chr1 32309143 32309233 -249884431 + MIR SINE MIR 30 131 -77 830 270 52 0 chr1 32309540 32309751 -249883913 - MIR SINE MIR -29 233 12 598 292 81 22 chr1 32309785 32310023 -249883641 - MIR SINE MIR 0 262 15 223 147 0 0 chr1 32310069 32310103 -249883561 - MIR SINE MIR -10 252 219 308 335 112 19 chr1 32310120 32310326 -249883338 - MIR SINE MIR -8 254 30 202 337 114 29 chr1 32310612 32310858 -249882806 - L3 LINE CR1 -54 1523 1257 448 310 35 18 chr1 32310891 32311062 -249882602 - MIR SINE MIR -6 256 83 288 314 21 7 chr1 32311183 32311323 -249882341 + MLT1L LTR MaLR 474 615 0 254 340 0 0 chr1 32311534 32311634 -249882030 - MIR SINE MIR -123 139 40 600 226 19 26 chr1 32311675 32311830 -249881834 + LTR41 LTR ERVL 1 154 -619 466 170 85 65 chr1 32312175 32312328 -249881336 + LTR41 LTR ERVL 608 763 -10 578 308 213 6 chr1 32313795 32314142 -249879522 + L2 LINE L2 2837 3255 -17 288 0 0 0 chr1 32314142 32314174 -249879490 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 231 121 0 0 chr1 32315363 32315396 -249878268 + MIR SINE MIR 117 149 -113 683 114 0 0 chr1 32315467 32315572 -249878092 - AluSg/x SINE Alu -4 308 204 2692 48 0 0 chr1 32315637 32315946 -249877718 + AluY SINE Alu 1 309 -2 638 200 88 33 chr1 32315948 32316188 -249877476 + L1ME1 LINE L1 5280 5532 -630 838 170 60 23 chr1 32316325 32316543 -249877121 - L1PA13 LINE L1 -3 6160 5935 * 2134 215 28 48 chr1 32316527 32317130 -249876534 + L1ME1 LINE L1 5517 6130 -54 2579 57 0 0 chr1 32317130 32317427 -249876237 + AluY SINE Alu 1 297 -14 2134 215 28 48 chr1 32317427 32317452 -249876212 + L1ME1 LINE L1 6130 6154 -30 1727 129 7 7 chr1 32317452 32317747 -249875917 - L1MA4 LINE L1 -8 6292 5998 2134 215 28 48 chr1 32317747 32317818 -249875846 + L1ME1 LINE L1 6154 6184 0 618 308 26 79 chr1 32318137 32318442 -249875222 + L2 LINE L2 2978 3266 -6 6518 204 63 27 chr1 32318650 32321287 -249872377 + L1MC3 LINE L1 3247 5401 -745 1043 335 53 26 chr1 32321290 32321872 -249871792 + L2 LINE L2 2298 2895 -419 2301 94 13 10 chr1 32322544 32322852 -249870812 - AluSq SINE Alu -4 309 1 2117 173 46 35 chr1 32322999 32323152 -249870512 - MER65C LTR ERV1 0 461 311 1863 135 43 0 chr1 32323152 32323433 -249870231 + AluJb SINE Alu 2 294 -18 2277 102 7 3 chr1 32323435 32323738 -249869926 + AluSq SINE Alu 1 304 -9 2117 173 46 35 chr1 32323738 32324037 -249869627 - MER65C LTR ERV1 -150 311 1 1601 272 15 30 chr1 32324678 32324730 -249868934 - MER4-int LTR ERV1 -816 4055 4004 2265 108 3 0 chr1 32324730 32325018 -249868646 + AluSg SINE Alu 1 289 -21 1601 272 15 30 chr1 32325018 32325208 -249868456 - MER4-int LTR ERV1 -867 4004 3813 2248 106 0 16 chr1 32325208 32325511 -249868153 + AluSx SINE Alu 1 298 -14 1601 272 15 30 chr1 32325511 32325726 -249867938 - MER4-int LTR ERV1 -1058 3813 3604 259 146 0 73 chr1 32325813 32325868 -249867796 - MER4-int LTR ERV1 -1069 5262 5212 2780 183 90 74 chr1 32325898 32327213 -249866451 - MER4-int LTR ERV1 -1228 5103 2469 956 151 13 128 chr1 32327292 32327597 -249866067 - MER4-int LTR ERV1 -2868 3730 3461 844 188 55 105 chr1 32327688 32327740 -249865924 - MER4-int LTR ERV1 -4310 2448 2395 2229 120 13 0 chr1 32327740 32328040 -249865624 + AluSq SINE Alu 1 304 -9 844 188 55 105 chr1 32328040 32328556 -249865108 - MER4-int LTR ERV1 -4363 2395 1909 670 226 84 42 chr1 32328592 32328647 -249865017 - MER4-int LTR ERV1 -5835 1981 1636 1216 184 40 25 chr1 32328647 32328924 -249864740 - LTR57-int LTR ERVL -3757 1586 1306 282 265 29 0 chr1 32328924 32328992 -249864672 + L1M1 LINE L1 14 83 -7482 1369 159 54 46 chr1 32328992 32329343 -249864321 - MER4-int LTR ERV1 -2942 1929 1576 938 248 124 10 chr1 32329348 32329655 -249864009 - MER34 LTR ERV1 -162 380 39 2331 174 15 34 chr1 32330397 32330447 -249863217 - MER65C LTR ERV1 0 461 412 1977 145 6 25 chr1 32330447 32330765 -249862899 - AluSx SINE Alu 0 312 1 2331 174 15 34 chr1 32330765 32331184 -249862480 - MER65C LTR ERV1 -49 412 1 198 0 0 0 chr1 32331341 32331363 -249862301 + (TG)n Simple_repeat Simple_repeat 2 23 0 225 213 28 19 chr1 32331406 32331514 -249862150 + GA-rich Low_complexity Low_complexity 2 110 0 1826 283 81 9 chr1 32331514 32332196 -249861468 - L2 LINE L2 -1014 2300 1570 631 333 45 16 chr1 32332310 32332692 -249860972 - L1MC4a LINE L1 -1894 5914 5522 228 294 111 33 chr1 32333096 32333249 -249860415 + MLT1J LTR MaLR 5 169 -342 248 159 32 16 chr1 32333286 32333349 -249860315 + MLT1L LTR MaLR 205 268 -347 257 267 42 42 chr1 32333469 32333589 -249860075 + MLT1J LTR MaLR 343 462 -49 252 300 58 33 chr1 32333665 32333785 -249859879 + MIR SINE MIR 17 139 -69 311 315 133 6 chr1 32334072 32334237 -249859427 + MIR3 SINE MIR 8 193 -15 363 306 24 8 chr1 32334624 32334748 -249858916 + MIR3 SINE MIR 82 207 -1 610 300 136 29 chr1 32334962 32335418 -249858246 + MLT1K LTR MaLR 78 582 -6 487 277 90 32 chr1 32335829 32335984 -249857680 - MIR3 SINE MIR -29 179 16 354 316 58 7 chr1 32336722 32336877 -249856787 - MIR SINE MIR -18 244 82 198 359 92 23 chr1 32337652 32337783 -249855881 + MIR3 SINE MIR 3 142 -66 393 303 76 20 chr1 32338323 32338521 -249855143 - MLT1K LTR MaLR -6 582 374 1304 204 52 31 chr1 32339084 32339452 -249854212 + L1MD2 LINE L1 5953 7967 -28 965 235 73 8 chr1 32339504 32339764 -249853900 - L1MDb LINE L1 -6088 321 45 271 197 15 0 chr1 32339769 32339835 -249853829 + L1MD1 LINE L1 6174 6240 -2 378 107 0 0 chr1 32340364 32340420 -249853244 + (TG)n Simple_repeat Simple_repeat 2 57 0 336 277 133 18 chr1 32340444 32340610 -249853054 - MIR SINE MIR -76 186 2 460 237 29 40 chr1 32340651 32340835 -249852829 - MIR SINE MIR -70 138 8 429 213 64 0 chr1 32341931 32342025 -249851639 + MIR SINE MIR 65 164 -98 183 139 0 0 chr1 32342073 32342109 -249851555 + (TA)n Simple_repeat Simple_repeat 1 36 0 387 287 118 0 chr1 32342157 32342293 -249851371 + L2 LINE L2 3118 3269 -3 181 263 35 0 chr1 32343583 32343640 -249850024 + L2 LINE L2 3200 3258 -14 533 282 92 11 chr1 32344765 32344939 -249848725 - MIR SINE MIR -66 196 9 394 211 154 49 chr1 32344945 32345068 -249848596 - L3 LINE CR1 -108 1469 1334 190 277 113 50 chr1 32345077 32345218 -249848446 - L3b LINE CR1 -321 1262 1113 301 184 66 13 chr1 32345286 32345362 -249848302 - L1MDa LINE L1 -4021 2519 2440 394 250 9 0 chr1 32345496 32345608 -249848056 - L1MA10 LINE L1 -1 6333 6221 3653 72 4 0 chr1 32345613 32346088 -249847576 + L1PA7 LINE L1 5675 6151 -3 2202 207 107 28 chr1 32346089 32347101 -249846563 - L1ME LINE L1 -584 5582 4497 537 265 49 100 chr1 32347272 32347743 -249845921 + L2 LINE L2 2826 3272 0 194 235 12 129 chr1 32347905 32347990 -249845674 - L3 LINE CR1 -135 1442 1368 330 245 11 32 chr1 32348149 32348243 -249845421 + MIR SINE MIR 60 151 -57 195 195 24 0 chr1 32348819 32348860 -249844804 - MIR SINE MIR -110 152 111 241 336 104 15 chr1 32349746 32349880 -249843784 - MIR SINE MIR -62 146 1 367 324 115 17 chr1 32350176 32350463 -249843201 + L2 LINE L2 1749 2063 -1251 208 276 0 17 chr1 32350487 32350545 -249843119 + L3 LINE CR1 1375 1431 -146 307 301 124 47 chr1 32350573 32350657 -249843007 - MIR SINE MIR -12 250 174 2735 33 0 0 chr1 32350657 32350962 -249842702 - AluY SINE Alu -6 305 1 307 301 124 47 chr1 32350962 32351070 -249842594 - MIR SINE MIR -88 174 43 * 363 338 77 21 chr1 32351067 32351301 -249842363 - MIR SINE MIR 0 262 16 647 288 21 58 chr1 32351695 32351935 -249841729 - MIR SINE MIR -12 250 20 425 286 119 16 chr1 32351981 32352166 -249841498 - MIR SINE MIR -10 252 49 295 329 68 48 chr1 32352774 32352920 -249840744 + MIR3 SINE MIR 17 165 -43 2991 127 14 10 chr1 32353025 32353515 -249840149 - L1MB3 LINE L1 -2 6181 5690 304 128 0 0 chr1 32353515 32353562 -249840102 + MLT2B3 LTR ERVL 5 51 -503 1985 169 101 42 chr1 32353747 32354203 -249839461 + MLT2B3 LTR ERVL 71 553 -1 2143 169 14 33 chr1 32354204 32354598 -249839066 - L1MB3 LINE L1 -485 5698 5313 2514 71 0 0 chr1 32354598 32354895 -249838769 + AluY SINE Alu 1 297 -14 2143 169 14 33 chr1 32354895 32355060 -249838604 - L1MB3 LINE L1 -870 5313 5146 3487 106 16 12 chr1 32355096 32355605 -249838059 + MER9 LTR ERVK 1 511 0 583 153 34 25 chr1 32355605 32355723 -249837941 + HERVK9 LTR ERVK 1 119 -5797 * 4767 125 61 53 chr1 32355718 32355958 -249837706 - HERVK9 LTR ERVK -4856 1060 823 214 196 0 71 chr1 32355958 32356014 -249837650 - MER5B DNA MER1_type -72 106 55 4767 125 61 53 chr1 32356014 32356673 -249836991 - HERVK9 LTR ERVK -5093 823 99 3427 123 8 6 chr1 32356690 32357200 -249836464 - MER9 LTR ERVK 0 511 1 2797 87 0 3 chr1 32357325 32357681 -249835983 - THE1A LTR MaLR 0 355 1 788 179 17 0 chr1 32358332 32358505 -249835159 + (CACCAT)n Simple_repeat Simple_repeat 4 179 0 227 238 0 0 chr1 32358505 32358547 -249835117 + (CCA)n Simple_repeat Simple_repeat 1 42 0 1253 223 59 30 chr1 32358548 32358952 -249834712 + LTR52 LTR ERVL 1 416 -5 731 246 78 1 chr1 32359026 32359223 -249834441 - MIR SINE MIR -32 230 20 241 344 22 0 chr1 32359218 32359308 -249834356 - L3b LINE CR1 -188 1395 1304 * 210 307 34 0 chr1 32359371 32359459 -249834205 + L2 LINE L2 2148 2238 -1076 271 256 228 39 chr1 32359506 32359686 -249833978 - MIR SINE MIR -28 234 21 1518 194 8 88 chr1 32360077 32360474 -249833190 - MLT1A1 LTR MaLR 0 365 1 314 227 182 0 chr1 32360665 32360753 -249832911 - L2 LINE L2 -13 3300 3197 386 313 0 0 chr1 32360869 32360968 -249832696 + MIR SINE MIR 49 147 -61 309 294 45 75 chr1 32361882 32361931 -249831733 - L2 LINE L2 -6 3266 3217 2790 184 24 0 chr1 32361931 32362392 -249831272 - MER70A LTR ERVL 0 472 1 309 294 45 75 chr1 32362392 32362543 -249831121 - L2 LINE L2 -55 3217 3072 315 130 0 0 chr1 32362629 32362683 -249830981 + (CCA)n Simple_repeat Simple_repeat 1 54 0 5642 137 7 44 chr1 32362956 32363960 -249829704 - MSTA-int LTR MaLR -611 969 3 324 175 16 0 chr1 32363962 32364025 -249829639 - MSTA LTR MaLR 0 428 365 244 327 110 37 chr1 32364126 32364648 -249829016 + L2 LINE L2 2681 3245 -27 630 315 81 48 chr1 32364813 32365293 -249828371 + MLT1L LTR MaLR 120 615 0 305 269 82 30 chr1 32365503 32365637 -249828027 + MIR3 SINE MIR 16 156 -52 902 254 46 17 chr1 32365674 32365914 -249827750 - MIR SINE MIR -3 259 13 187 229 0 0 chr1 32365930 32365965 -249827699 - MIR SINE MIR -227 35 1 283 191 0 0 chr1 32365965 32366012 -249827652 + L2 LINE L2 3226 3272 0 260 267 85 57 chr1 32367012 32367188 -249826476 + MIR SINE MIR 46 226 -36 277 237 0 0 chr1 32367226 32367285 -249826379 + (ATG)n Simple_repeat Simple_repeat 1 59 0 906 162 0 0 chr1 32367289 32367468 -249826196 + (TGG)n Simple_repeat Simple_repeat 1 179 0 276 200 0 0 chr1 32367484 32367549 -249826115 + (TGG)n Simple_repeat Simple_repeat 1 65 0 2250 194 127 46 chr1 32367562 32368372 -249825292 + MER31-int LTR ERV1 4228 5103 -1228 320 268 0 37 chr1 32368376 32368458 -249825206 + MER31-int LTR ERV1 3881 3959 -977 1601 272 15 30 chr1 32368544 32368759 -249824905 + MER31-int LTR ERV1 3604 3821 -1050 2252 103 0 17 chr1 32368759 32369061 -249824603 - AluSx SINE Alu -15 297 1 1601 272 15 30 chr1 32369061 32369251 -249824413 + MER31-int LTR ERV1 3821 4004 -867 2265 108 3 0 chr1 32369251 32369539 -249824125 - AluSg SINE Alu -21 289 1 1601 272 15 30 chr1 32369539 32369591 -249824073 + MER31-int LTR ERV1 4004 4055 -816 2072 173 36 49 chr1 32370228 32370527 -249823137 + MER65C LTR ERV1 1 302 -159 2212 105 7 7 chr1 32370527 32370831 -249822833 - AluSq SINE Alu -9 304 1 1801 145 43 0 chr1 32370833 32371115 -249822549 - AluJb SINE Alu -17 295 2 2072 173 36 49 chr1 32371115 32371279 -249822385 + MER65C LTR ERV1 303 461 0 457 109 31 0 chr1 32371427 32371491 -249822173 + Alu SINE Alu 2 67 -243 314 222 56 44 chr1 32371778 32371868 -249821796 + L1MC4 LINE L1 6612 6702 -1340 * 334 264 33 11 chr1 32371850 32371941 -249821723 - L1MC4 LINE L1 -1337 6705 6613 1798 267 72 4 chr1 32371941 32372623 -249821041 + L1MEc LINE L1 1587 2314 -4082 366 238 0 0 chr1 32372590 32372674 -249820990 + L1ME1 LINE L1 5996 6079 -156 * 350 243 54 0 chr1 32372677 32372788 -249820876 + L1MA10 LINE L1 6217 6333 -1 318 333 89 6 chr1 32372916 32373096 -249820568 + L3 LINE CR1 643 837 -740 560 232 219 22 chr1 32373331 32373534 -249820130 - MIR SINE MIR -2 260 17 301 339 119 0 chr1 32373547 32373724 -249819940 + L3 LINE CR1 982 1179 -398 282 235 71 35 chr1 32373759 32373844 -249819820 - L2 LINE L2 -50 3263 3176 201 147 0 0 chr1 32373849 32373883 -249819781 + (CA)n Simple_repeat Simple_repeat 1 34 0 1095 192 113 0 chr1 32373895 32374154 -249819510 - L1ME LINE L1 -508 5656 5360 250 225 14 14 chr1 32374178 32374249 -249819415 + (TA)n Simple_repeat Simple_repeat 1 71 0 386 293 9 35 chr1 32374250 32374366 -249819298 + L1MC4 LINE L1 6593 6705 -1337 309 322 17 26 chr1 32374305 32374420 -249819244 - L1MC4 LINE L1 -1339 6703 6590 * 234 240 10 39 chr1 32374455 32374559 -249819105 + (CATATA)n Simple_repeat Simple_repeat 1 101 0 1907 77 11 4 chr1 32374672 32374945 -249818719 - HERVL-A2 LTR ERVL -115 5539 5265 * 34526 67 3 3 chr1 32374938 32379412 -249814252 - HERVL-A2 LTR ERVL -1180 4474 1 385 38 38 0 chr1 32379412 32379465 -249814199 - MLT2A2 LTR ERVL 0 453 399 323 222 111 0 chr1 32379466 32379547 -249814117 - L1MC4 LINE L1 -1339 6703 6614 2738 62 49 10 chr1 32379547 32379936 -249813728 - MLT2A1 LTR ERVL -40 404 1 204 158 0 0 chr1 32379992 32380030 -249813634 + GA-rich Low_complexity Low_complexity 1 38 0 269 312 37 24 chr1 32380132 32380324 -249813340 - MIR SINE MIR -18 244 50 377 272 165 27 chr1 32380396 32380620 -249813044 - LTR41 LTR ERVL -13 760 506 619 186 78 12 chr1 32380876 32381043 -249812621 - LTR41 LTR ERVL -579 194 17 646 254 42 11 chr1 32381048 32381237 -249812427 + MER58 DNA MER1_type 1 195 -146 264 214 29 0 chr1 32381210 32381279 -249812385 + MER58 DNA MER1_type 2259 2329 -91 1672 148 122 10 chr1 32381279 32381583 -249812081 + MER44D DNA MER2_type 1 608 -1 408 214 20 0 chr1 32381583 32381677 -249811987 + MER58 DNA MER1_type 2321 2416 -4 2312 100 0 0 chr1 32381697 32382007 -249811657 + AluSx SINE Alu 1 310 -2 1760 95 4 4 chr1 32382192 32382435 -249811229 + AluSx SINE Alu 17 259 -53 315 219 37 61 chr1 32382745 32382827 -249810837 - MIR3 SINE MIR -21 187 108 259 293 112 9 chr1 32382850 32382966 -249810698 + MIR SINE MIR 16 143 -65 860 224 83 85 chr1 32383973 32384371 -249809293 - LTR16A1 LTR ERVL -5 452 56 254 238 105 70 chr1 32384474 32384617 -249809047 + MLT1K LTR MaLR 66 213 -375 1076 262 80 18 chr1 32384732 32385121 -249808543 - L1ME LINE L1 -445 5721 5309 418 279 48 34 chr1 32385135 32385282 -249808382 - L1ME LINE L1 -1698 4448 4300 184 196 22 120 chr1 32385400 32385492 -249808172 + MIR SINE MIR 124 206 -56 * 827 228 35 5 chr1 32385491 32385688 -249807976 - MIR SINE MIR -59 203 1 276 149 135 54 chr1 32385714 32385788 -249807876 + MIR SINE MIR 178 257 -5 300 368 34 10 chr1 32385790 32385994 -249807670 - L2 LINE L2 -39 3233 3025 257 268 62 31 chr1 32387595 32387692 -249805972 - MIR3 SINE MIR -51 157 58 210 171 0 0 chr1 32387967 32388002 -249805662 - MIR SINE MIR -6 256 222 387 306 98 21 chr1 32388028 32388221 -249805443 - MIR SINE MIR -9 253 46 559 221 67 20 chr1 32388518 32388695 -249804969 - MIR SINE MIR -61 147 3 339 316 0 0 chr1 32388995 32389090 -249804574 + CT-rich Low_complexity Low_complexity 1 95 0 221 0 35 0 chr1 32390129 32390158 -249803506 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 340 278 120 0 chr1 32391129 32391237 -249802427 + MIR SINE MIR 107 227 -35 1382 282 37 50 chr1 32391573 32392634 -249801030 - L1ME3 LINE L1 -199 5963 4915 1491 277 115 44 chr1 32392755 32393696 -249799968 - L1ME3 LINE L1 -1384 4762 3698 1935 125 3 17 chr1 32393696 32394018 -249799646 - AluSg SINE Alu 0 310 1 1491 277 115 44 chr1 32394018 32394408 -249799256 - L1ME3 LINE L1 -2448 3698 3337 235 316 30 71 chr1 32394416 32394584 -249799080 - MIR SINE MIR -57 205 45 260 350 69 72 chr1 32394817 32395123 -249798541 - L2 LINE L2 -50 3222 2918 3693 218 45 34 chr1 32395235 32395537 -249798127 + MER45B DNA AcHobo 5 302 -1279 4096 136 34 6 chr1 32395537 32396219 -249797445 + L1MB3 LINE L1 5476 6176 -7 3693 218 45 34 chr1 32396219 32396805 -249796859 + MER45B DNA AcHobo 302 903 -137 2860 232 30 39 chr1 32396805 32397041 -249796623 + L1M4 LINE L1 3643 3879 -2267 1538 210 0 10 chr1 32397041 32397351 -249796313 + AluJo SINE Alu 1 307 -5 2860 232 30 39 chr1 32397351 32397834 -249795830 + L1M4 LINE L1 3879 4356 -1790 2080 115 0 7 chr1 32397834 32398130 -249795534 - AluSx SINE Alu -18 294 1 2860 232 30 39 chr1 32398130 32398267 -249795397 + L1M4 LINE L1 4356 4493 -1653 498 252 101 31 chr1 32398275 32398561 -249795103 + L1MEc LINE L1 1325 1584 -4956 548 172 25 49 chr1 32398573 32398695 -249794969 + MLT1E2 LTR MaLR 505 623 -3 489 293 25 10 chr1 32398714 32398912 -249794752 + L1MCc LINE L1 152 352 -6071 1295 258 77 33 chr1 32398914 32399614 -249794050 + L1MCc LINE L1 1096 1868 -5073 438 20 0 0 chr1 32399614 32399665 -249793999 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1295 258 77 33 chr1 32399665 32399915 -249793749 + L1MCc LINE L1 1868 2106 -4835 405 94 35 0 chr1 32399915 32400000 -249793664 + (TA)n Simple_repeat Simple_repeat 1 88 0 333 204 11 23 chr1 32400673 32400761 -249792903 - LTR16A LTR ERVL -38 412 326 23 78 0 0 chr1 32401422 32401473 -249792191 + AT_rich Low_complexity Low_complexity 1 51 0 677 235 41 6 chr1 32401502 32401672 -249791992 + MIR SINE MIR 1 176 -86 772 248 57 76 chr1 32401813 32402046 -249791618 - L1MD2 LINE L1 -2 6357 6130 215 61 30 0 chr1 32402046 32402079 -249791585 + (TG)n Simple_repeat Simple_repeat 1 34 0 772 248 57 76 chr1 32402079 32402159 -249791505 - L1MD2 LINE L1 -229 6130 6050 551 260 104 6 chr1 32402168 32402341 -249791323 - MIR SINE MIR -40 222 33 2065 132 0 0 chr1 32402459 32402755 -249790909 - AluSx SINE Alu -16 296 1 379 297 44 1 chr1 32402871 32402999 -249790665 - L1M4 LINE L1 -522 5656 5524 805 279 137 37 chr1 32403000 32403973 -249789691 - L1M4 LINE L1 -710 5452 4400 362 313 162 5 chr1 32403977 32404175 -249789489 + MIR SINE MIR 28 256 -6 417 361 82 20 chr1 32404831 32405269 -249788395 - L1MD2 LINE L1 -2004 5804 5340 219 36 0 0 chr1 32405544 32405572 -249788092 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 266 59 0 0 chr1 32405703 32405737 -249787927 - L1P LINE L1 -1988 4158 4125 8440 89 5 0 chr1 32405738 32407675 -249785989 + L1PA7 LINE L1 4196 6149 -5 5236 118 16 9 chr1 32408140 32408914 -249784750 + MER4E LTR ERV1 1 779 0 1634 133 105 0 chr1 32409333 32409618 -249784046 - MSTA LTR MaLR 0 428 114 246 214 0 0 chr1 32409664 32409720 -249783944 - L1ME LINE L1 -684 5437 5382 685 110 31 1 chr1 32409730 32409840 -249783824 - MSTA LTR MaLR -313 113 1 9705 171 19 4 chr1 32409846 32411468 -249782196 - MSTA-int LTR MaLR -6 1645 1 2323 147 65 5 chr1 32411470 32411872 -249781792 - MSTA LTR MaLR -2 426 1 2314 78 0 0 chr1 32412225 32412521 -249781143 - AluY SINE Alu -15 296 1 422 297 66 19 chr1 32412758 32412970 -249780694 - HAL1b LINE L1 -561 787 566 476 245 134 53 chr1 32413191 32413551 -249780113 + MLT1H LTR MaLR 42 533 -16 468 268 9 18 chr1 32413606 32413718 -249779946 + MIR3 SINE MIR 92 202 -6 181 316 95 11 chr1 32413924 32414019 -249779645 + L2 LINE L2 1820 1922 -1392 1994 112 11 3 chr1 32414571 32414857 -249778807 - AluSx SINE Alu -24 288 1 187 256 0 0 chr1 32415604 32415643 -249778021 + L2 LINE L2 3214 3252 -20 234 191 16 48 chr1 32416536 32416599 -249777065 + LTR15 LTR ERV1 334 394 -99 777 287 37 19 chr1 32416614 32416935 -249776729 + L2 LINE L2 2405 2731 -583 1400 165 23 3 chr1 32417087 32417354 -249776310 + MLT1A1 LTR MaLR 1 361 -4 1409 214 54 0 chr1 32417363 32417658 -249776006 - MLT1C LTR MaLR 0 467 157 2408 137 70 10 chr1 32417658 32418060 -249775604 + MSTB LTR MaLR 1 426 0 2493 122 3 0 chr1 32418067 32418421 -249775243 + THE1A LTR MaLR 1 355 0 11960 95 1 0 chr1 32418426 32419984 -249773680 + THE1A-int LTR MaLR 21 1580 0 2626 92 0 40 chr1 32419984 32420354 -249773310 + THE1A LTR MaLR 1 355 0 771 165 0 79 chr1 32420364 32420528 -249773136 - MLT1C LTR MaLR -239 151 1 394 184 35 0 chr1 32420563 32420650 -249773014 + L1M4 LINE L1 4673 4762 -1384 731 171 0 0 chr1 32420650 32420761 -249772903 + FLAM_C SINE Alu 3 113 -30 3390 164 46 0 chr1 32421105 32421689 -249771975 - LTR31 LTR ERV1 0 619 9 367 272 26 0 chr1 32422500 32422614 -249771050 + MER69 DNA AcHobo 1 117 -1109 * 1754 223 25 69 chr1 32422596 32423130 -249770534 + MER69 DNA AcHobo 1938 2443 -83 2416 66 0 0 chr1 32423130 32423432 -249770232 - AluY SINE Alu -9 302 1 1754 223 25 69 chr1 32423432 32423508 -249770156 + MER69 DNA AcHobo 2443 2521 -5 371 324 125 26 chr1 32423520 32424001 -249769663 + L2 LINE L2 2751 3286 -27 414 305 64 0 chr1 32424013 32424154 -249769510 + L1MC4a LINE L1 5531 5680 -441 575 289 46 29 chr1 32424155 32424394 -249769270 + MIR SINE MIR 3 245 -17 348 342 72 45 chr1 32424421 32424643 -249769021 + L1MC4a LINE L1 5697 5924 -1884 458 282 111 54 chr1 32424906 32425088 -249768576 + MLT1H LTR MaLR 23 193 -216 2222 81 0 26 chr1 32425088 32425397 -249768267 + AluY SINE Alu 6 306 -5 458 282 111 54 chr1 32425397 32425599 -249768065 + MLT1H LTR MaLR 193 409 0 400 271 116 15 chr1 32425896 32426095 -249767569 - L1ME LINE L1 -307 5814 5596 239 342 26 0 chr1 32426655 32426731 -249766933 + MIR SINE MIR 41 118 -90 699 237 0 68 chr1 32426737 32426927 -249766737 + MLT1J1 LTR MaLR 8 184 -262 258 313 176 11 chr1 32427502 32427678 -249765986 + MIR SINE MIR 8 212 -50 180 367 0 0 chr1 32428567 32428616 -249765048 - MIR3 SINE MIR -18 190 142 206 280 16 80 chr1 32428833 32428958 -249764706 + L2 LINE L2 2979 3095 -177 335 278 123 74 chr1 32428970 32429337 -249764327 + L2 LINE L2 2928 3312 -1 462 230 46 82 chr1 32430330 32430525 -249763139 - MIR SINE MIR -35 227 34 293 305 105 15 chr1 32430983 32431183 -249762481 + L2 LINE L2 2562 2779 -535 777 209 88 38 chr1 32431226 32431489 -249762175 - LTR33 LTR ERVL -236 285 10 193 423 11 23 chr1 32431468 32431643 -249762021 - MIR3 SINE MIR -27 181 9 * 2333 129 117 8 chr1 32431859 32432245 -249761419 + MSTA LTR MaLR 1 428 0 414 284 97 45 chr1 32432901 32433211 -249760453 - MER115 DNA AcHobo -367 326 1 2286 139 34 0 chr1 32434071 32434423 -249759241 - THE1B LTR MaLR 0 364 1 526 332 126 0 chr1 32434577 32434767 -249758897 + MIR SINE MIR 48 261 -1 217 347 88 48 chr1 32435207 32435354 -249758310 - MIR3 SINE MIR -52 156 4 310 304 176 7 chr1 32435937 32436085 -249757579 + MIR SINE MIR 23 195 -67 1689 247 78 19 chr1 32436085 32436570 -249757094 - MLT1E LTR MaLR 0 593 80 253 297 198 0 chr1 32436727 32436838 -249756826 - L2 LINE L2 -2 3270 3138 489 257 123 48 chr1 32437355 32437738 -249755926 + MLT1J2 LTR MaLR 75 449 -1 384 295 168 38 chr1 32437756 32438095 -249755569 - L2 LINE L2 0 3313 2931 435 289 37 15 chr1 32438116 32438251 -249755413 - MIR SINE MIR -54 208 71 218 182 182 0 chr1 32438483 32438538 -249755126 - MER5A DNA MER1_type -95 94 30 182 286 143 0 chr1 32438768 32438845 -249754819 - MIR SINE MIR -155 107 20 229 182 0 36 chr1 32439157 32439212 -249754452 + CT-rich Low_complexity Low_complexity 1 53 0 200 366 37 30 chr1 32439214 32439348 -249754316 - L2 LINE L2 -1 3271 3137 291 198 110 33 chr1 32439502 32439593 -249754071 - L2 LINE L2 -189 3083 2986 228 163 0 0 chr1 32439650 32439693 -249753971 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 417 280 23 30 chr1 32439953 32440085 -249753579 + MIR SINE MIR 36 166 -96 389 298 144 0 chr1 32440091 32440306 -249753358 + MLT1H LTR MaLR 49 294 -255 265 313 8 61 chr1 32440502 32440633 -249753031 + MIR SINE MIR 139 262 0 209 247 104 13 chr1 32440752 32440829 -249752835 + MIR SINE MIR 63 146 -116 285 323 46 15 chr1 32441203 32441333 -249752331 + L2 LINE L2 3180 3313 0 581 341 106 17 chr1 32441343 32442050 -249751614 + L2 LINE L2 2540 3313 0 323 169 0 0 chr1 32442107 32442166 -249751498 + MER96 DNA MER1_type? 4 62 -113 189 368 7 21 chr1 32442960 32443104 -249750560 + L2 LINE L2 2965 3106 -166 336 282 60 27 chr1 32443106 32443255 -249750409 + MIR SINE MIR 3 156 -52 409 291 140 1 chr1 32443707 32443854 -249749810 - MIR SINE MIR -26 236 62 360 119 0 0 chr1 32443854 32443913 -249749751 + L1MA4A LINE L1 6240 6298 -5 409 291 140 1 chr1 32443913 32443937 -249749727 - MIR SINE MIR -200 62 43 217 346 0 12 chr1 32444325 32444406 -249749258 - L2 LINE L2 -1 3271 3192 492 273 0 8 chr1 32444414 32444546 -249749118 - MLT1K LTR MaLR -13 575 445 223 282 77 13 chr1 32444549 32444627 -249749037 - L2 LINE L2 -38 3275 3193 819 298 42 14 chr1 32444651 32444940 -249748724 - MLT1K LTR MaLR -158 430 134 556 274 56 28 chr1 32445341 32445520 -249748144 + MIR SINE MIR 58 241 -21 623 309 21 0 chr1 32446034 32446228 -249747436 - MIR3 SINE MIR 0 208 11 1257 175 0 21 chr1 32446318 32446552 -249747112 - MLT1A1 LTR MaLR 0 365 137 2145 126 7 0 chr1 32446562 32446871 -249746793 + AluSx SINE Alu 1 311 -1 742 140 22 7 chr1 32446965 32447101 -249746563 - MLT1A1 LTR MaLR -227 138 1 1835 173 3 3 chr1 32447279 32447591 -249746073 + AluJo SINE Alu 1 312 0 2258 101 0 0 chr1 32447778 32448074 -249745590 - AluSg1 SINE Alu -13 296 1 705 330 66 30 chr1 32448846 32449273 -249744391 + L2 LINE L2 2826 3267 -5 2073 71 0 4 chr1 32449632 32449901 -249743763 + AluY SINE Alu 44 311 0 502 296 19 0 chr1 32449982 32450141 -249743523 - MIR SINE MIR -7 255 94 230 56 28 0 chr1 32451319 32451355 -249742309 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2316 240 62 40 chr1 32451469 32452423 -249741241 + L1ME1 LINE L1 5199 6331 -3 488 265 171 34 chr1 32452612 32452963 -249740701 + MLT1H LTR MaLR 133 531 -18 181 200 0 25 chr1 32453009 32453049 -249740615 - L2 LINE L2 -207 3065 3027 185 0 40 0 chr1 32453055 32453080 -249740584 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1603 99 9 9 chr1 32453112 32453345 -249740319 - L1PB1 LINE L1 0 6151 5919 359 293 23 38 chr1 32454213 32454346 -249739318 + MIR SINE MIR 24 154 -108 192 298 18 0 chr1 32454986 32455043 -249738621 - L3 LINE CR1 -3 1574 1517 462 231 0 0 chr1 32455053 32455157 -249738507 - L2 LINE L2 -319 2994 2891 186 279 140 37 chr1 32455297 32455433 -249738231 + L3 LINE CR1 1076 1225 -352 340 369 37 28 chr1 32456007 32456221 -249737443 - L2 LINE L2 0 3313 3098 476 262 21 14 chr1 32456231 32456372 -249737292 - MIR SINE MIR -70 192 51 597 301 27 16 chr1 32456508 32456691 -249736973 + MIR SINE MIR 28 212 -50 353 315 22 12 chr1 32456878 32457044 -249736620 + MIR SINE MIR 76 244 -18 302 333 14 42 chr1 32457137 32457281 -249736383 + MIR3 SINE MIR 17 156 -52 544 303 76 10 chr1 32457827 32458025 -249735639 + L2 LINE L2 3078 3288 -25 414 0 0 0 chr1 32458029 32458075 -249735589 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 197 385 8 46 chr1 32458081 32458211 -249735453 + L3 LINE CR1 1354 1478 -99 569 250 97 59 chr1 32459716 32459961 -249733703 + MIR SINE MIR 1 261 -1 288 77 0 0 chr1 32459962 32460001 -249733663 + (CAT)n Simple_repeat Simple_repeat 2 40 0 479 342 75 0 chr1 32460027 32460308 -249733356 - L1ME4a LINE L1 -191 5930 5629 245 280 112 0 chr1 32461848 32461955 -249731709 + MIR SINE MIR 35 153 -55 301 250 19 74 chr1 32461962 32462070 -249731594 - MER5B DNA MER1_type 0 178 77 491 268 70 6 chr1 32462093 32462250 -249731414 + MIR SINE MIR 17 183 -79 335 200 18 73 chr1 32463000 32463110 -249730554 + L3 LINE CR1 1397 1500 -77 757 275 24 14 chr1 32463115 32463326 -249730338 + MIR SINE MIR 7 219 -43 1387 206 40 20 chr1 32464138 32464487 -249729177 + MLT1A2 LTR MaLR 3 358 -16 2452 90 27 33 chr1 32464487 32464853 -249728811 + THE1B LTR MaLR 1 364 0 616 350 50 14 chr1 32465545 32465902 -249727762 + MER115 DNA AcHobo 319 688 -5 275 284 27 0 chr1 32465908 32465982 -249727682 + L2 LINE L2 2680 2755 -559 195 188 0 0 chr1 32466254 32466302 -249727362 + C-rich Low_complexity Low_complexity 3 50 0 510 17 0 0 chr1 32466402 32466461 -249727203 + (TG)n Simple_repeat Simple_repeat 2 60 0 301 277 188 27 chr1 32466527 32466783 -249726881 - MLT1K LTR MaLR -253 335 39 301 360 98 6 chr1 32467321 32467485 -249726179 + MIR SINE MIR 21 199 -63 223 247 214 0 chr1 32467566 32467655 -249726009 + MIR SINE MIR 38 145 -63 187 295 106 20 chr1 32468132 32468239 -249725425 - MIR SINE MIR -69 139 42 1721 160 11 55 chr1 32469360 32469741 -249723923 + LTR10A LTR ERV1 1 364 -245 282 309 34 4 chr1 32469771 32469979 -249723685 - L2 LINE L2 -654 2660 2370 1111 95 23 19 chr1 32469998 32470205 -249723459 + LTR10A LTR ERV1 362 612 -21 190 340 201 0 chr1 32470223 32470382 -249723282 + L2 LINE L2 2620 2810 -504 * 988 249 126 28 chr1 32470380 32470770 -249722894 - L2 LINE L2 0 3313 2886 209 323 59 59 chr1 32470802 32471056 -249722608 + L2 LINE L2 2831 3084 -188 805 327 77 18 chr1 32471081 32471482 -249722182 + L2 LINE L2 2889 3313 0 255 241 24 24 chr1 32472491 32472574 -249721090 + L2 LINE L2 2379 2461 -853 442 313 188 19 chr1 32472597 32473231 -249720433 + L2 LINE L2 2562 3311 -2 2231 97 0 10 chr1 32473987 32474287 -249719377 + AluSx SINE Alu 1 297 -15 276 253 73 27 chr1 32474362 32474512 -249719152 - L2 LINE L2 -280 2992 2836 657 259 129 0 chr1 32475493 32475663 -249718001 + MIR SINE MIR 64 255 -7 180 77 0 0 chr1 32475667 32475693 -249717971 + (TAA)n Simple_repeat Simple_repeat 3 28 0 353 302 60 0 chr1 32475808 32475990 -249717674 + L2 LINE L2 2853 3045 -227 246 56 0 0 chr1 32476198 32476234 -249717430 + MADE1 DNA Mariner 1 36 -44 198 191 0 0 chr1 32476715 32476757 -249716907 + GA-rich Low_complexity Low_complexity 3 44 0 264 314 0 35 chr1 32476761 32476847 -249716817 + G-rich Low_complexity Low_complexity 1 83 0 189 0 0 0 chr1 32476895 32476916 -249716748 + (GA)n Simple_repeat Simple_repeat 1 21 0 509 313 46 70 chr1 32477079 32477533 -249716131 + L2 LINE L2 2830 3272 0 220 254 186 8 chr1 32478411 32478529 -249715135 + MIR3 SINE MIR 54 192 -16 198 321 66 0 chr1 32479022 32479128 -249714536 + L2 LINE L2 3137 3249 -23 250 343 20 10 chr1 32480406 32480508 -249713156 - MIR3 SINE MIR -28 180 78 251 315 22 22 chr1 32480604 32480696 -249712968 - L2 LINE L2 -40 3232 3141 348 325 86 43 chr1 32481108 32481355 -249712309 - MIR SINE MIR -6 256 1 342 278 37 25 chr1 32481506 32481691 -249711973 - MIR SINE MIR 0 262 9 210 162 0 0 chr1 32481736 32481773 -249711891 + MIR SINE MIR 112 148 -114 2757 236 116 27 chr1 32482595 32482839 -249710825 - L1M4 LINE L1 -2154 3992 3771 2424 97 3 3 chr1 32482839 32483149 -249710515 + AluY SINE Alu 1 310 -1 2757 236 116 27 chr1 32483149 32483926 -249709738 - L1M4 LINE L1 -2375 3771 2881 419 325 91 22 chr1 32484235 32484466 -249709198 - MIR SINE MIR -15 247 1 251 361 82 0 chr1 32485151 32485273 -249708391 + MIR SINE MIR 76 207 -55 183 250 171 0 chr1 32485289 32485365 -249708299 - L2 LINE L2 -1 3312 3224 1850 168 134 11 chr1 32485385 32485766 -249707898 - MSTA LTR MaLR 0 428 1 4875 143 18 9 chr1 32485766 32486531 -249707133 - MSTA-int LTR MaLR 0 1580 809 3144 161 16 0 chr1 32486528 32487076 -249706588 - MSTA-int LTR MaLR -1094 557 1 * 1851 129 137 51 chr1 32487076 32487320 -249706344 - MSTA LTR MaLR 0 428 136 3286 159 14 77 chr1 32487320 32488051 -249705613 - LTR8 LTR ERV1 -2 689 5 1851 129 137 51 chr1 32488051 32488200 -249705464 - MSTA LTR MaLR -292 136 1 229 261 22 87 chr1 32488312 32488404 -249705260 + MIR SINE MIR 61 146 -62 345 294 39 0 chr1 32488706 32488808 -249704856 + MIR SINE MIR 80 185 -77 270 332 77 41 chr1 32489064 32489260 -249704404 - MIR SINE MIR -38 224 22 460 286 64 0 chr1 32489301 32489441 -249704223 - MIR SINE MIR -7 255 107 246 287 0 70 chr1 32489524 32489653 -249704011 + L2 LINE L2 2940 3059 -213 457 313 55 10 chr1 32490048 32490249 -249703415 + L2 LINE L2 3102 3311 -2 298 329 77 51 chr1 32490268 32490502 -249703162 + MIR SINE MIR 13 252 -10 209 277 178 50 chr1 32490541 32490642 -249703022 + MIR SINE MIR 79 192 -70 243 143 39 26 chr1 32490722 32490799 -249702865 + (TTA)n Simple_repeat Simple_repeat 3 80 0 395 200 105 0 chr1 32490810 32490905 -249702759 - MIR SINE MIR -73 189 85 271 284 164 9 chr1 32491448 32491564 -249702100 - L2 LINE L2 -12 3260 3127 195 42 0 0 chr1 32492044 32492068 -249701596 + (CA)n Simple_repeat Simple_repeat 2 25 0 211 350 0 0 chr1 32492088 32492168 -249701496 + (CA)n Simple_repeat Simple_repeat 1 80 0 265 269 42 93 chr1 32492214 32492407 -249701257 + L2 LINE L2 3110 3292 -21 676 278 85 5 chr1 32492748 32492960 -249700704 - MIR SINE MIR -3 259 31 307 260 27 0 chr1 32493154 32493227 -249700437 - MIR3 SINE MIR -15 193 119 217 239 0 0 chr1 32493827 32493873 -249699791 - L2 LINE L2 -1 3312 3267 233 208 19 19 chr1 32494679 32494732 -249698932 - L2 LINE L2 0 3313 3261 844 316 16 0 chr1 32494734 32494987 -249698677 + MIR SINE MIR 6 262 0 210 318 34 11 chr1 32494955 32495043 -249698621 - L2 LINE L2 -22 3250 3161 * 278 299 23 0 chr1 32495062 32495149 -249698515 - MIR SINE MIR -119 143 55 562 236 65 63 chr1 32495154 32495538 -249698126 - MLT1L LTR MaLR -3 586 137 191 125 25 0 chr1 32496353 32496393 -249697271 + (GAGTG)n Simple_repeat Simple_repeat 3 43 0 203 200 32 53 chr1 32496408 32496503 -249697161 + (GAGTG)n Simple_repeat Simple_repeat 3 95 0 * 396 199 11 70 chr1 32496457 32496643 -249697021 + (GGGTG)n Simple_repeat Simple_repeat 3 177 0 * 415 224 16 38 chr1 32496541 32496773 -249696891 + GA-rich Low_complexity Low_complexity 1 226 0 526 282 46 11 chr1 32497812 32497986 -249695678 - MIR SINE MIR 0 262 83 481 276 16 0 chr1 32498041 32498164 -249695500 - MIR3 SINE MIR -26 182 58 535 317 27 0 chr1 32498860 32499046 -249694618 - ERVL LTR ERVL -1804 3960 3770 1192 211 83 40 chr1 32499147 32499545 -249694119 + MLT1C LTR MaLR 53 467 0 954 233 125 17 chr1 32499810 32500098 -249693566 - LTR36 LTR ERV1 0 611 293 567 148 0 101 chr1 32500181 32500330 -249693334 - LTR36 LTR ERV1 -477 134 1 445 211 2 4 chr1 32500330 32500432 -249693232 - ERVL LTR ERVL -2327 3327 3246 445 345 47 12 chr1 32500688 32500943 -249692721 - ERVL LTR ERVL -5181 583 320 323 285 101 14 chr1 32501227 32501357 -249692307 - LTR33A LTR ERVL 0 523 367 2505 93 0 0 chr1 32501357 32501667 -249691997 + AluSq SINE Alu 1 310 -3 323 285 101 14 chr1 32501667 32501743 -249691921 - LTR33A LTR ERVL -156 367 299 246 337 53 0 chr1 32501902 32501997 -249691667 - LTR33A LTR ERVL -363 160 61 413 292 71 7 chr1 32502121 32502275 -249691389 + MIR SINE MIR 79 242 -20 454 260 20 27 chr1 32502280 32502426 -249691238 + MIR3 SINE MIR 42 186 -22 270 270 100 10 chr1 32502991 32503091 -249690573 + MIR SINE MIR 50 158 -104 435 314 30 96 chr1 32503245 32503685 -249689979 + MLT1K LTR MaLR 125 535 -53 350 290 69 0 chr1 32503807 32503938 -249689726 + L2 LINE L2 3123 3262 -10 207 0 0 0 chr1 32503940 32503963 -249689701 + (GGGA)n Simple_repeat Simple_repeat 3 25 0 325 283 64 43 chr1 32504188 32504375 -249689289 - L2 LINE L2 -44 3269 3079 504 280 63 40 chr1 32504454 32504654 -249689010 - LTR33 LTR ERVL -309 212 24 355 299 121 0 chr1 32504925 32505082 -249688582 + MIR3 SINE MIR 12 187 -21 545 270 7 0 chr1 32505400 32505537 -249688127 + MIR3 SINE MIR 49 186 -22 238 353 82 0 chr1 32505626 32505748 -249687916 + MIR SINE MIR 16 147 -115 992 231 75 14 chr1 32505752 32506098 -249687566 - L1MEc LINE L1 -4155 2670 2304 1049 222 24 0 chr1 32506135 32506383 -249687281 - L1MD3 LINE L1 -2157 5838 5585 1644 244 47 4 chr1 32506768 32507263 -249686401 - L1MEc LINE L1 -4562 2084 1569 238 225 67 22 chr1 32507352 32507441 -249686223 + L1MEc LINE L1 1875 1967 -4429 1241 225 9 23 chr1 32507448 32507795 -249685869 - L1MEc LINE L1 -4986 1556 1215 3185 240 32 21 chr1 32507841 32508234 -249685430 - L1MEc LINE L1 -5711 831 444 294 29 0 0 chr1 32508234 32508269 -249685395 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3185 240 32 21 chr1 32508269 32508696 -249684968 - L1MEc LINE L1 -6098 444 2 260 341 23 17 chr1 32508811 32508987 -249684677 - L1MEc LINE L1 -4934 1450 1274 2662 251 55 13 chr1 32508988 32509700 -249683964 - L1MEc LINE L1 -5620 943 202 2119 92 11 21 chr1 32509887 32510211 -249683453 + AluSx SINE Alu 1 321 0 507 317 85 50 chr1 32511769 32512088 -249681576 - MLT1K LTR MaLR -2 586 257 1732 152 92 0 chr1 32512096 32512412 -249681252 + MSTB LTR MaLR 1 345 -81 247 268 31 31 chr1 32512412 32512509 -249681155 + CT-rich Low_complexity Low_complexity 1 97 0 630 318 40 8 chr1 32513117 32513369 -249680295 - MIR SINE MIR 0 262 3 344 214 111 40 chr1 32513704 32513830 -249679834 - L2 LINE L2 0 3313 3179 180 281 61 12 chr1 32513823 32513905 -249679759 + MIR3 SINE MIR 93 178 -30 * 408 97 0 0 chr1 32514355 32514417 -249679247 + (TG)n Simple_repeat Simple_repeat 1 62 0 503 342 48 0 chr1 32514586 32514814 -249678850 - MIR SINE MIR -3 259 21 437 252 89 57 chr1 32514850 32515096 -249678568 - MIR SINE MIR -7 255 2 1554 163 8 12 chr1 32515346 32515597 -249678067 + AluSx SINE Alu 3 252 -60 501 272 78 61 chr1 32516010 32516259 -249677405 - MIR SINE MIR -6 256 5 200 306 0 0 chr1 32516703 32516765 -249676899 + MIR3 SINE MIR 144 205 -3 499 214 38 9 chr1 32516985 32517145 -249676519 + MIR SINE MIR 30 192 -62 377 185 62 0 chr1 32517561 32517642 -249676022 + MIR SINE MIR 79 164 -98 212 315 39 31 chr1 32517681 32517808 -249675856 - L2 LINE L2 -9 3304 3177 409 244 0 0 chr1 32518943 32519025 -249674639 + MER81 DNA DNA 1 82 -32 7890 197 61 27 chr1 32519095 32520793 -249672871 - MER52A LTR ERV1 0 1755 1 1668 196 33 84 chr1 32521087 32521540 -249672124 + MER63B DNA MER1_type 1 430 -6 368 186 0 0 chr1 32522010 32522080 -249671584 - MIR SINE MIR -58 150 81 261 320 55 16 chr1 32522409 32522665 -249670999 + L2 LINE L2 2600 2865 -449 196 284 34 23 chr1 32522960 32523048 -249670616 + L2 LINE L2 3184 3272 0 3229 80 27 5 chr1 32523067 32523515 -249670149 + LTR22A LTR ERVK 1 458 0 2233 144 26 8 chr1 32523515 32523897 -249669767 + HERVK22 LTR ERVK 1 389 -6448 353 289 138 67 chr1 32523943 32524241 -249669423 - L2 LINE L2 -99 3173 2855 238 333 67 0 chr1 32524590 32524680 -249668984 + MIR SINE MIR 19 114 -148 272 287 23 0 chr1 32524764 32524851 -249668813 - MIR SINE MIR -7 255 167 206 129 0 0 chr1 32525441 32525472 -249668192 + MIR SINE MIR 112 142 -66 297 282 16 32 chr1 32525496 32525620 -249668044 - MIR3 SINE MIR -13 195 74 311 270 44 33 chr1 32525656 32525789 -249667875 + MER5A DNA MER1_type 49 169 -9 263 261 92 31 chr1 32525809 32525939 -249667725 + MLT1K LTR MaLR 204 341 -247 244 360 10 0 chr1 32526168 32526268 -249667396 + MIR3 SINE MIR 105 205 -3 315 294 32 8 chr1 32526617 32526743 -249666921 - MIR3 SINE MIR -77 131 3 200 33 0 33 chr1 32526847 32526877 -249666787 + (GGGGA)n Simple_repeat Simple_repeat 3 31 0 215 311 98 16 chr1 32526965 32527087 -249666577 + MIR SINE MIR 121 252 -10 402 289 0 63 chr1 32527423 32527582 -249666082 + MIR SINE MIR 45 193 -69 474 187 1 103 chr1 32528402 32528548 -249665116 - MIR SINE MIR -71 137 57 3140 162 29 2 chr1 32529491 32530113 -249663551 + L1MA4 LINE L1 5662 6300 0 2363 153 23 0 chr1 32530143 32530535 -249663129 - LOR1a LTR ERV1 -2 495 95 1077 156 0 0 chr1 32530537 32530697 -249662967 + AluSg/x SINE Alu 153 312 0 717 60 0 10 chr1 32530697 32530797 -249662867 - LOR1b LTR ERV1 -362 99 1 725 286 158 56 chr1 32531093 32532221 -249661443 - HAL1b LINE L1 -12 1336 94 433 281 11 51 chr1 32533587 32533765 -249659899 - MER117 DNA MER1_type -16 181 11 350 292 164 18 chr1 32533810 32533981 -249659683 + MIR SINE MIR 33 228 -34 252 304 65 0 chr1 32534094 32534186 -249659478 + MER117 DNA MER1_type 65 162 -35 208 294 44 15 chr1 32534504 32534572 -249659092 + MIR3 SINE MIR 132 201 -7 826 76 69 8 chr1 32534621 32534752 -249658912 - L1MB3 LINE L1 -4 6179 6041 1659 224 30 8 chr1 32534752 32535113 -249658551 - MLT1A2 LTR MaLR 0 374 6 5468 190 22 36 chr1 32535120 32536949 -249656715 - L1MB3 LINE L1 -139 6044 4261 306 50 0 0 chr1 32536949 32536989 -249656675 + (TG)n Simple_repeat Simple_repeat 1 40 0 5468 190 22 36 chr1 32536989 32537233 -249656431 - L1MB3 LINE L1 -1922 4261 4015 444 292 77 29 chr1 32537584 32537793 -249655871 + L3 LINE CR1 1280 1498 -79 311 298 89 0 chr1 32537782 32537906 -249655758 + MIR SINE MIR 14 148 -114 * 294 292 34 0 chr1 32538514 32538603 -249655061 + L2 LINE L2 3203 3294 -19 200 247 79 34 chr1 32538723 32538812 -249654852 - L2 LINE L2 -635 2679 2587 986 269 21 65 chr1 32538904 32539332 -249654332 - MLT1I LTR MaLR 0 409 1 3828 278 67 17 chr1 32539412 32540548 -249653116 + L1MB8 LINE L1 1 1193 -5666 * 4922 186 18 44 chr1 32540545 32541290 -249652374 + L1MB8 LINE L1 4913 5676 -1313 2661 118 3 0 chr1 32541290 32541653 -249652011 + THE1B LTR MaLR 1 364 0 4922 186 18 44 chr1 32541653 32542093 -249651571 + L1MB8 LINE L1 5676 6126 -863 203 0 37 0 chr1 32542093 32542120 -249651544 + (TA)n Simple_repeat Simple_repeat 2 29 0 4922 186 18 44 chr1 32542120 32542250 -249651414 + L1MB8 LINE L1 6126 6258 -731 2264 75 7 0 chr1 32542250 32542542 -249651122 + AluY SINE Alu 1 294 -17 4922 186 18 44 chr1 32542542 32543357 -249650307 + L1MB8 LINE L1 6258 6989 0 6239 226 46 34 chr1 32543398 32545256 -249648408 + L1M4 LINE L1 16 1888 -4758 1937 77 0 8 chr1 32545255 32545516 -249648148 - L1P LINE L1 -1052 5094 4836 * 1067 46 0 0 chr1 32545516 32545641 -249648023 + L1PA8 LINE L1 6036 6165 -7 481 168 92 60 chr1 32545679 32545864 -249647800 - Charlie1 DNA MER1_type -45 2716 2526 458 267 5 51 chr1 32545864 32546059 -249647605 + L1M4 LINE L1 1914 2099 -4547 405 269 61 61 chr1 32546101 32546356 -249647308 + L1M4 LINE L1 2214 2473 -4173 2023 96 4 7 chr1 32546356 32546657 -249647007 + AluSc SINE Alu 1 300 0 405 269 61 61 chr1 32546657 32546696 -249646968 + L1M4 LINE L1 2472 2510 -4136 232 298 33 58 chr1 32547006 32547127 -249646537 - MER5A DNA MER1_type -10 179 62 229 250 29 15 chr1 32547333 32547401 -249646263 + MIR SINE MIR 194 262 0 498 288 68 31 chr1 32547459 32547622 -249646042 - MIR SINE MIR -37 171 1 366 263 142 57 chr1 32547951 32548159 -249645505 + MIR SINE MIR 40 260 -2 247 293 57 29 chr1 32548596 32548736 -249644928 + MIR SINE MIR 41 184 -78 243 269 239 36 chr1 32548791 32548958 -249644706 - MIR SINE MIR -19 243 43 267 297 29 101 chr1 32549626 32549764 -249643900 + MIR SINE MIR 18 145 -117 186 196 59 172 chr1 32550122 32550326 -249643338 - L2 LINE L2 -164 3149 2969 364 260 92 14 chr1 32550375 32550529 -249643135 + MIR SINE MIR 38 201 -61 477 0 0 0 chr1 32551090 32551143 -249642521 + (TG)n Simple_repeat Simple_repeat 1 53 0 203 244 26 26 chr1 32551145 32551223 -249642441 + (CAGAGA)n Simple_repeat Simple_repeat 3 80 0 727 186 0 0 chr1 32551226 32551344 -249642320 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chr1 32551344 32551367 -249642297 + AT_rich Low_complexity Low_complexity 1 23 0 279 79 0 0 chr1 32551523 32551561 -249642103 + (GGA)n Simple_repeat Simple_repeat 3 40 0 249 33 0 0 chr1 32551566 32551596 -249642068 + (ATG)n Simple_repeat Simple_repeat 2 31 0 3787 159 243 16 chr1 32552229 32553107 -249640557 + MER52C LTR ERV1 202 1278 0 536 222 206 21 chr1 32553416 32553610 -249640054 - MIR SINE MIR -13 249 20 270 171 0 0 chr1 32553915 32553985 -249639679 + (CA)n Simple_repeat Simple_repeat 1 70 0 225 0 0 0 chr1 32554053 32554078 -249639586 + (CA)n Simple_repeat Simple_repeat 1 25 0 216 250 42 0 chr1 32554104 32554152 -249639512 - MIR SINE MIR -174 88 39 360 256 73 44 chr1 32554328 32554465 -249639199 - LTR16B LTR ERVL -2 462 322 2885 83 16 58 chr1 32555107 32555219 -249638445 + MER84 LTR ERVI 3 118 -389 2325 77 0 0 chr1 32555219 32555517 -249638147 + AluSc SINE Alu 1 298 -11 2885 83 16 58 chr1 32555517 32555837 -249637827 + MER84 LTR ERVI 118 417 -90 1363 87 0 5 chr1 32555838 32556022 -249637642 + L1PA10 LINE L1 5975 6157 -11 713 109 20 0 chr1 32556157 32556258 -249637406 + MER84 LTR ERVI 405 507 0 405 290 127 19 chr1 32556334 32556697 -249636967 - MLT1J2 LTR MaLR -14 428 33 286 306 139 7 chr1 32556799 32556943 -249636721 + MER5A DNA MER1_type 27 189 0 467 135 122 0 chr1 32557726 32557800 -249635864 - MER63 DNA MER1_type -84 752 44 452 149 122 0 chr1 32558113 32558187 -249635477 - MER63 DNA MER1_type -310 752 44 1820 164 132 78 chr1 32558709 32559186 -249634478 - MLT1D LTR MaLR -2 503 1 690 193 16 152 chr1 32559186 32559430 -249634234 - MLT1D-int LTR MaLR 0 1371 1161 313 111 0 0 chr1 32559458 32559503 -249634161 - MLT2F LTR ERVL 0 663 619 246 287 139 10 chr1 32559506 32559607 -249634057 - MLT2F LTR ERVL -366 297 184 867 94 86 0 chr1 32561598 32561726 -249631938 + MER85 DNA T2_type 1 139 0 520 326 41 5 chr1 32561790 32562008 -249631656 + MIR SINE MIR 13 238 -24 2176 242 68 58 chr1 32563077 32563750 -249629914 + MER115 DNA AcHobo 5 684 -9 258 338 13 0 chr1 32564191 32564268 -249629396 - MIR SINE MIR -83 125 48 295 229 14 0 chr1 32564360 32564430 -249629234 + MLT2B3 LTR ERVL 1 71 -483 11635 24 7 1 chr1 32564628 32566488 -249627176 - L1PA5 LINE L1 -255 5899 4035 8002 122 14 28 chr1 32566488 32567755 -249625909 - L1P LINE L1 -4338 1808 560 4313 66 0 0 chr1 32567755 32568287 -249625377 + L1PA6 LINE L1 5614 6145 -9 1065 235 56 84 chr1 32568332 32569296 -249624368 - L1MDa LINE L1 -4494 1767 606 447 289 71 77 chr1 32569431 32570097 -249623567 + L2 LINE L2 2619 3272 -41 434 209 139 57 chr1 32570226 32570384 -249623280 + MLT1K LTR MaLR 347 517 -71 334 269 126 18 chr1 32570544 32570711 -249622953 + HAL1 LINE L1 2301 2485 -22 209 373 109 0 chr1 32571584 32571694 -249621970 + L2 LINE L2 3151 3272 0 538 254 86 43 chr1 32572058 32572290 -249621374 - MLT1K LTR MaLR 0 588 347 2290 249 77 41 chr1 32573425 32574162 -249619502 - L1ME1 LINE L1 -4 6162 5367 6666 132 101 12 chr1 32574162 32575355 -249618309 - HSMAR2 DNA Mariner 0 1302 3 2290 249 77 41 chr1 32575355 32575623 -249618041 - L1ME1 LINE L1 -799 5367 5110 259 281 271 0 chr1 32575683 32575779 -249617885 - L2 LINE L2 -15 3257 3136 1031 236 83 50 chr1 32575814 32576353 -249617311 + L2 LINE L2 2725 3285 -28 512 302 71 32 chr1 32576353 32576605 -249617059 + MIR SINE MIR 1 262 0 1707 143 15 0 chr1 32576690 32576963 -249616701 - LTR26 LTR ERV1 0 603 327 1623 81 47 111 chr1 32576964 32577261 -249616403 - LTR66 LTR ERVL -1 609 332 507 141 0 54 chr1 32577263 32577355 -249616309 - LTR66 LTR ERVL -210 400 314 * 3278 68 0 0 chr1 32577335 32577734 -249615930 - LTR66 LTR ERVL -211 399 1 2139 116 44 0 chr1 32577734 32578051 -249615613 - LTR26 LTR ERV1 -272 331 1 293 336 75 0 chr1 32578943 32579050 -249614614 - L2 LINE L2 -1 3271 3157 462 261 49 0 chr1 32579532 32579674 -249613990 + MLT1L LTR MaLR 119 267 -348 212 241 0 0 chr1 32579871 32579929 -249613735 + T-rich Low_complexity Low_complexity 2 59 0 259 250 0 0 chr1 32580089 32580141 -249613523 + LTR30 LTR ERV1 1 52 -670 873 175 35 123 chr1 32580141 32580565 -249613099 + LTR12 LTR ERV1 54 284 -430 374 155 68 97 chr1 32580565 32580668 -249612996 + LTR30 LTR ERV1 378 643 -79 586 144 0 0 chr1 32580668 32580758 -249612906 + LTR12 LTR ERV1 625 714 0 230 207 37 37 chr1 32580852 32580934 -249612730 + MIR SINE MIR 40 121 -87 273 313 71 0 chr1 32580955 32581067 -249612597 + L2 LINE L2 3147 3266 -6 2967 261 34 13 chr1 32581683 32581854 -249611810 + L1M4 LINE L1 2164 2330 -3816 1951 124 41 72 chr1 32581854 32582241 -249611423 - THE1C LTR MaLR 0 375 1 2967 261 34 13 chr1 32582241 32583357 -249610307 + L1M4 LINE L1 2330 3490 -2656 1166 184 5 0 chr1 32583406 32583629 -249610035 - AluSc SINE Alu 0 309 86 398 291 8 8 chr1 32583639 32583756 -249609908 + L1M4 LINE L1 3559 3675 -2471 2502 270 37 23 chr1 32584035 32584261 -249609403 + L1ME1 LINE L1 3318 3539 -2607 1785 94 0 0 chr1 32584261 32584485 -249609179 - AluSc SINE Alu 0 309 86 2502 270 37 23 chr1 32584485 32585336 -249608328 + L1ME1 LINE L1 3539 4410 -1736 2569 217 80 35 chr1 32585364 32586825 -249606839 + L1ME1 LINE L1 4553 6068 -98 280 197 15 0 chr1 32586834 32586900 -249606764 + L1MA10 LINE L1 6260 6326 -8 504 289 27 7 chr1 32587179 32587328 -249606336 - MIR3 SINE MIR -15 193 42 210 292 15 0 chr1 32587435 32587500 -249606164 - MIR SINE MIR -72 190 125 194 344 52 31 chr1 32588247 32588343 -249605321 + L2 LINE L2 2957 3054 -218 301 238 198 64 chr1 32588418 32588590 -249605074 + L1ME1 LINE L1 5970 6164 0 499 227 35 28 chr1 32588957 32589098 -249604566 + MIR3 SINE MIR 40 181 -27 273 381 51 20 chr1 32590003 32590200 -249603464 - MIR SINE MIR -59 203 1 231 240 93 0 chr1 32590630 32590705 -249602959 - MIR SINE MIR -70 192 111 305 221 105 0 chr1 32590724 32590810 -249602854 - MIR3 SINE MIR -25 183 89 209 256 0 0 chr1 32591696 32591739 -249601925 + (CTCA)n Simple_repeat Simple_repeat 1 43 0 190 270 56 34 chr1 32592390 32592479 -249601185 - L2 LINE L2 -228 3044 2954 191 292 0 0 chr1 32593376 32593448 -249600216 + MIR SINE MIR 51 122 -86 461 199 7 99 chr1 32594462 32594603 -249599061 + MLT1H LTR MaLR 422 549 0 628 306 101 6 chr1 32594603 32594930 -249598734 - L2 LINE L2 -27 3286 2929 202 325 84 0 chr1 32594992 32595075 -249598589 - MIR SINE MIR 0 262 173 648 299 42 103 chr1 32595090 32595642 -249598022 - MLT1K LTR MaLR 0 588 71 1797 178 7 0 chr1 32595741 32596027 -249597637 - AluJo SINE Alu -24 288 1 358 259 27 9 chr1 32596606 32596718 -249596946 - MIR3 SINE MIR -8 200 87 730 263 26 5 chr1 32596730 32596924 -249596740 - MIR SINE MIR -19 243 46 386 297 91 14 chr1 32597282 32597491 -249596173 + LTR33A LTR ERVL 299 523 0 361 265 93 0 chr1 32597940 32598123 -249595541 + MIR SINE MIR 11 212 -50 398 263 78 37 chr1 32599843 32600086 -249593578 + L2 LINE L2 2553 2805 -509 340 278 85 90 chr1 32601806 32602241 -249591423 - L2 LINE L2 -4 3268 2836 257 303 60 24 chr1 32603616 32603907 -249589757 + MLT1K LTR MaLR 7 335 -253 369 123 0 0 chr1 32603975 32604040 -249589624 + (CA)n Simple_repeat Simple_repeat 2 66 0 279 257 191 33 chr1 32604933 32605085 -249588579 - MER5B DNA MER1_type -2 176 1 1037 276 67 63 chr1 32605253 32605852 -249587812 + MLT2F LTR ERVL 3 603 -60 692 276 136 85 chr1 32606641 32607133 -249586531 + LTR33A LTR ERVL 2 518 -5 2498 115 3 3 chr1 32607634 32607998 -249585666 - THE1B LTR MaLR 0 364 1 624 305 31 13 chr1 32608451 32608677 -249584987 - MIR SINE MIR -27 235 6 304 233 17 78 chr1 32608680 32608796 -249584868 - L3 LINE CR1 -77 1500 1392 229 314 220 13 chr1 32609438 32609597 -249584067 - MIR SINE MIR -1 261 70 2127 317 42 22 chr1 32610276 32611086 -249582578 - HERV16 LTR ERVL -2347 2649 1824 1443 213 36 17 chr1 32611211 32611725 -249581939 - L1MD2 LINE L1 -1 6358 5783 1297 296 172 11 chr1 32611944 32612203 -249581461 - HERV16 LTR ERVL -3670 1326 1110 1424 194 114 39 chr1 32612203 32612615 -249581049 - LTR47B LTR ERVL 0 443 1 1297 296 172 11 chr1 32612615 32612989 -249580675 - HERV16 LTR ERVL -3886 1110 591 267 337 0 0 chr1 32613120 32613203 -249580461 - HERV16 LTR ERVL -4539 457 375 416 329 76 22 chr1 32613388 32613613 -249580051 - HERV16 LTR ERVL -4750 246 10 300 389 25 5 chr1 32613633 32613836 -249579828 - LTR16B LTR ERVL -2 462 256 331 313 183 18 chr1 32613886 32614110 -249579554 - MIR SINE MIR 0 262 2 460 311 48 5 chr1 32614280 32614489 -249579175 + Charlie8 DNA MER1_type 16 233 -2184 230 228 88 0 chr1 32614553 32614610 -249579054 - MLT1I LTR MaLR -10 399 338 240 360 7 15 chr1 32614700 32614836 -249578828 - MLT1I LTR MaLR -203 206 72 226 200 12 94 chr1 32614875 32614960 -249578704 + LTR65 LTR ERV1 224 301 -368 309 305 246 20 chr1 32614960 32615163 -249578501 - MIR SINE MIR -13 249 1 290 85 0 21 chr1 32615297 32615344 -249578320 + (TG)n Simple_repeat Simple_repeat 2 47 0 304 232 0 0 chr1 32615369 32615425 -249578239 - L2 LINE L2 -9 3304 3249 205 258 113 10 chr1 32615458 32615555 -249578109 - MIR SINE MIR -67 141 35 476 334 49 13 chr1 32615788 32616093 -249577571 + L1ME4a LINE L1 5628 5943 -178 208 257 0 19 chr1 32616151 32616256 -249577408 + GA-rich Low_complexity Low_complexity 2 104 0 467 271 99 17 chr1 32616262 32616443 -249577221 - MIR SINE MIR -29 233 38 254 320 0 0 chr1 32616583 32616644 -249577020 - MIR SINE MIR -82 180 117 1576 216 10 3 chr1 32616644 32616950 -249576714 + AluJo SINE Alu 1 308 -4 254 320 0 0 chr1 32616950 32616963 -249576701 - MIR SINE MIR -144 118 106 210 216 129 36 chr1 32618068 32618176 -249575488 - MIR SINE MIR -109 153 34 271 244 77 26 chr1 32618451 32618529 -249575135 - L2 LINE L2 0 3313 3232 2312 106 0 3 chr1 32618623 32618916 -249574748 - AluSg SINE Alu -18 292 1 271 330 95 14 chr1 32619696 32619907 -249573757 - MIR SINE MIR -12 250 20 2301 117 7 0 chr1 32620026 32620334 -249573330 - AluSx SINE Alu -2 310 1 511 326 22 6 chr1 32620365 32620543 -249573121 - MIR SINE MIR -53 209 29 488 263 26 19 chr1 32620681 32620837 -249572827 + MIR SINE MIR 51 207 -55 638 200 84 13 chr1 32621062 32621217 -249572447 + L2 LINE L2 2891 3056 -257 484 309 20 0 chr1 32621614 32621763 -249571901 - MIR SINE MIR -97 165 14 372 262 34 136 chr1 32622031 32622325 -249571339 - L2 LINE L2 -4 3268 3005 299 176 0 0 chr1 32623243 32623294 -249570370 + MIR SINE MIR 82 132 -76 269 191 56 127 chr1 32624047 32624173 -249569491 - L2 LINE L2 -237 3035 2919 435 228 11 0 chr1 32624333 32624425 -249569239 + MIR SINE MIR 79 171 -91 540 364 19 5 chr1 32624634 32624840 -249568824 + MIR SINE MIR 17 225 -37 253 301 40 15 chr1 32624967 32625228 -249568436 + L1M1 LINE L1 1754 2093 -4289 869 225 99 40 chr1 32625249 32625360 -249568304 + L1M3c LINE L1 922 1025 -5116 189 74 0 0 chr1 32625360 32625387 -249568277 + (CAA)n Simple_repeat Simple_repeat 1 27 0 869 225 99 40 chr1 32625387 32625493 -249568171 + L1M3c LINE L1 1025 1123 -5018 2267 111 6 19 chr1 32625493 32625809 -249567855 - AluSq SINE Alu -1 312 1 869 225 99 40 chr1 32625809 32625892 -249567772 + L1M3c LINE L1 1123 1241 -4900 314 192 141 13 chr1 32625893 32625971 -249567693 + MIR3 SINE MIR 78 165 -43 386 68 0 17 chr1 32626418 32626477 -249567187 + (CAT)n Simple_repeat Simple_repeat 3 60 0 400 204 85 42 chr1 32626855 32627003 -249566661 - MIR SINE MIR -61 147 3 1522 215 106 63 chr1 32628142 32628187 -249565477 - MLT2B2 LTR ERVL 0 515 473 1210 23 23 6 chr1 32628187 32628358 -249565306 + (TAGA)n Simple_repeat Simple_repeat 2 175 0 1522 215 106 63 chr1 32628358 32628805 -249564859 - MLT2B2 LTR ERVL -42 473 2 242 298 124 16 chr1 32628892 32629013 -249564651 + L2 LINE L2 3175 3308 -5 214 231 0 0 chr1 32629013 32629052 -249564612 + polypurine Low_complexity Low_complexity 1 39 0 262 254 64 36 chr1 32629708 32629818 -249563846 + MIR SINE MIR 33 145 -63 507 248 41 0 chr1 32629823 32629944 -249563720 - L2 LINE L2 -1 3312 3187 303 231 77 0 chr1 32630100 32630204 -249563460 - MIR SINE MIR -70 192 81 360 264 74 8 chr1 32630457 32630578 -249563086 + MIR SINE MIR 100 228 -34 280 260 112 54 chr1 32630673 32630896 -249562768 + L2 LINE L2 3073 3308 -5 386 265 36 54 chr1 32630942 32631108 -249562556 - MLT1J2 LTR MaLR -28 422 260 296 316 44 9 chr1 32631339 32631453 -249562211 + L2 LINE L2 2943 3060 -212 327 200 54 8 chr1 32631658 32631757 -249561907 + MIR SINE MIR 93 196 -66 1073 258 73 23 chr1 32631763 32632147 -249561517 + MLT1H LTR MaLR 1 403 -146 837 297 71 28 chr1 32632932 32633326 -249560338 + MER115 DNA AcHobo 24 434 -259 303 313 20 27 chr1 32633599 32633749 -249559915 + MIR SINE MIR 2 150 -112 476 211 12 84 chr1 32633752 32633918 -249559746 + MER46C DNA MER2_type 3 156 -182 502 225 23 58 chr1 32634031 32634289 -249559375 + L1MC5 LINE L1 7452 7700 -261 2328 126 0 0 chr1 32634598 32634908 -249558756 + AluSg SINE Alu 1 310 0 1905 209 51 53 chr1 32635399 32635832 -249557832 + MLT2B1 LTR ERVL 1 434 -86 2265 126 0 0 chr1 32635832 32636134 -249557530 - AluSx SINE Alu -10 302 1 1905 209 51 53 chr1 32636134 32636170 -249557494 + MLT2B1 LTR ERVL 434 469 -51 585 270 22 11 chr1 32636681 32636859 -249556805 - MIR SINE MIR -43 219 40 350 208 104 28 chr1 32638008 32638114 -249555550 + MER81 DNA DNA 1 114 0 559 312 78 9 chr1 32638235 32638466 -249555198 - MIR SINE MIR -13 249 3 737 248 218 37 chr1 32638522 32638986 -249554678 - MLT1H LTR MaLR -1 548 1 345 297 36 0 chr1 32639089 32639200 -249554464 + L2 LINE L2 2946 3060 -253 501 62 0 0 chr1 32639367 32639432 -249554232 + (GGGA)n Simple_repeat Simple_repeat 3 67 0 186 227 0 0 chr1 32639861 32639905 -249553759 - L2 LINE L2 -215 3057 3014 433 256 267 5 chr1 32640094 32640289 -249553375 - MIR SINE MIR 0 262 17 634 276 93 39 chr1 32640316 32640694 -249552970 - L2 LINE L2 -6 3307 2884 2719 99 41 7 chr1 32640694 32641108 -249552556 - MSTA LTR MaLR 0 428 1 634 276 93 39 chr1 32641108 32641209 -249552455 - L2 LINE L2 -429 2884 2790 1136 256 105 19 chr1 32641210 32641675 -249551989 + LTR33 LTR ERVL 1 505 -16 3223 114 55 18 chr1 32642151 32642659 -249551005 + MER1A DNA MER1_type 1 527 0 1475 202 73 3 chr1 32643536 32643877 -249549787 - MLT1A1 LTR MaLR 0 365 1 589 281 88 44 chr1 32643937 32644254 -249549410 - L2 LINE L2 -2 3311 2981 2005 143 53 36 chr1 32644273 32644453 -249549211 + THE1B LTR MaLR 1 176 -188 2287 119 0 3 chr1 32644453 32644765 -249548899 - AluSx SINE Alu -1 311 1 2005 143 53 36 chr1 32644765 32644942 -249548722 + THE1B LTR MaLR 176 364 0 663 273 45 73 chr1 32645061 32645391 -249548273 + L2 LINE L2 2952 3272 0 807 247 54 32 chr1 32645546 32646024 -249547640 + MLT1F1 LTR MaLR 7 567 0 2324 71 14 3 chr1 32646190 32646473 -249547191 + AluY SINE Alu 1 286 -25 514 157 31 42 chr1 32646526 32646787 -249546877 + GA-rich Low_complexity Low_complexity 1 258 0 427 339 145 21 chr1 32646873 32647259 -249546405 + MLT1K LTR MaLR 145 578 -10 1589 179 32 56 chr1 32647442 32647816 -249545848 + MLT1B LTR MaLR 4 368 -22 483 314 23 6 chr1 32647916 32648088 -249545576 - L2 LINE L2 -194 3078 2904 242 286 13 26 chr1 32648993 32649070 -249544594 - MIR SINE MIR -79 183 108 1044 293 53 30 chr1 32649448 32649878 -249543786 - MLT1J2 LTR MaLR -10 440 1 257 316 26 0 chr1 32649878 32649954 -249543710 - MIR SINE MIR -90 118 41 368 264 140 73 chr1 32650516 32650875 -249542789 + L1ME4a LINE L1 5596 5998 -123 237 33 0 0 chr1 32650875 32650905 -249542759 + (CA)n Simple_repeat Simple_repeat 2 31 0 368 264 140 73 chr1 32650905 32651037 -249542627 + L1ME4a LINE L1 5998 6120 -1 1858 220 8 25 chr1 32651250 32651646 -249542018 - MSTD LTR MaLR 0 396 8 659 311 17 40 chr1 32651868 32652167 -249541497 - MLT1H LTR MaLR -245 304 13 485 277 42 55 chr1 32652275 32652582 -249541082 - L1ME4a LINE L1 -51 6070 5768 479 215 11 0 chr1 32652585 32652678 -249540986 + MER33 DNA MER1_type 1 94 -230 1937 139 11 0 chr1 32652690 32652963 -249540701 + AluSx SINE Alu 1 276 -36 225 59 29 0 chr1 32652968 32653002 -249540662 + U3 snRNA snRNA 1 35 -182 1019 122 61 0 chr1 32653009 32653223 -249540441 + MER33 DNA MER1_type 121 347 -16 369 241 26 38 chr1 32653375 32653500 -249540164 - MIR SINE MIR -58 150 34 465 274 20 13 chr1 32653527 32653680 -249539984 - L1ME4a LINE L1 -440 5681 5528 215 375 12 0 chr1 32653681 32653761 -249539903 - L2 LINE L2 -10 3262 3182 183 339 85 7 chr1 32653904 32654187 -249539477 - L2 LINE L2 -190 3123 2819 2073 234 20 27 chr1 32654238 32654831 -249538833 - MER69 DNA AcHobo 0 2526 1938 379 211 133 0 chr1 32654825 32654915 -249538749 - MER69 DNA AcHobo -1123 103 2 * 187 246 291 25 chr1 32654943 32655142 -249538522 - L2 LINE L2 -615 2699 2448 799 293 119 23 chr1 32656211 32657044 -249536620 - L2 LINE L2 -5 3308 2396 2085 117 11 7 chr1 32657942 32658348 -249535316 + AluSx SINE Alu 1 407 0 1155 65 18 6 chr1 32658357 32658527 -249535137 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 404 37 19 0 chr1 32659406 32659460 -249534204 + (TG)n Simple_repeat Simple_repeat 2 56 0 2204 135 0 3 chr1 32659477 32659789 -249533875 + AluSx SINE Alu 1 311 -1 302 339 43 26 chr1 32659836 32659951 -249533713 + HAL1b LINE L1 85 201 -1147 219 409 83 0 chr1 32659986 32660118 -249533546 - L2 LINE L2 -18 3254 3112 246 310 69 47 chr1 32660223 32660355 -249533309 - MIR SINE MIR -75 133 3 1692 122 0 4 chr1 32661408 32661645 -249532019 + AluSq SINE Alu 71 306 -7 372 284 92 0 chr1 32662297 32662438 -249531226 - MIR3 SINE MIR -22 186 33 626 312 36 20 chr1 32662724 32662971 -249530693 - MIR SINE MIR -2 260 10 199 267 81 109 chr1 32663726 32663947 -249529717 + MIR SINE MIR 48 262 0 441 301 29 0 chr1 32663993 32664129 -249529535 - MIR3 SINE MIR -60 148 9 2155 117 6 25 chr1 32664145 32664461 -249529203 - AluSx SINE Alu -2 310 1 275 333 2 45 chr1 32664756 32665077 -249528587 + CT-rich Low_complexity Low_complexity 3 390 0 2174 109 0 7 chr1 32665094 32665408 -249528256 - AluSx SINE Alu 0 312 1 357 306 35 12 chr1 32665409 32665582 -249528082 + CT-rich Low_complexity Low_complexity 2 178 0 229 236 95 23 chr1 32665992 32666086 -249527578 - MIR SINE MIR -67 141 41 481 313 62 70 chr1 32666705 32667220 -249526444 + LTR67 LTR ERVL 46 556 -1 915 220 11 0 chr1 32667408 32667585 -249526079 + MIR SINE MIR 8 186 -76 290 306 50 50 chr1 32668434 32668633 -249525031 + L2 LINE L2 2318 2516 -798 276 369 15 15 chr1 32668759 32668889 -249524775 + L2 LINE L2 3184 3313 0 332 294 135 0 chr1 32668890 32669016 -249524648 - MIR SINE MIR 0 262 120 589 108 118 0 chr1 32669039 32669141 -249524523 + AluSg/x SINE Alu 180 293 -16 309 270 9 27 chr1 32669142 32669253 -249524411 - MIR SINE MIR -84 124 16 305 321 9 0 chr1 32670192 32670298 -249523366 + MIR SINE MIR 30 136 -72 272 346 26 39 chr1 32670844 32671000 -249522664 - MIR SINE MIR -21 241 88 239 340 47 0 chr1 32671008 32671114 -249522550 - L2 LINE L2 -18 3254 3144 302 328 46 15 chr1 32671522 32671653 -249522011 - L2 LINE L2 0 3313 3179 446 282 82 39 chr1 32672144 32672399 -249521265 - L2 LINE L2 -63 3250 2985 207 292 0 14 chr1 32672775 32672847 -249520817 + C-rich Low_complexity Low_complexity 4 74 0 198 244 0 0 chr1 32673331 32673376 -249520288 - MIR SINE MIR -149 113 69 2403 164 40 6 chr1 32673642 32674111 -249519553 - MER66B LTR ERV1 0 486 2 13615 117 13 13 chr1 32674124 32675929 -249517735 - MER66B-int LTR ERV1 -22 6654 4847 4532 43 5 0 chr1 32675929 32676504 -249517160 - L1PA7 LINE L1 0 6154 5577 13615 117 13 13 chr1 32676504 32676750 -249516914 - MER66B-int LTR ERV1 -1828 4848 4603 1231 187 8 12 chr1 32676801 32677042 -249516622 - MER66B-int LTR ERV1 -3845 2831 2592 * 1692 103 0 0 chr1 32677041 32677274 -249516390 - MER66B-int LTR ERV1 -1482 5194 4962 * 7451 168 22 27 chr1 32677271 32678641 -249515023 - MER66B-int LTR ERV1 -4104 2572 1210 733 245 85 20 chr1 32678734 32678934 -249514730 - MER66B-int LTR ERV1 -3574 3102 2890 597 76 0 0 chr1 32678982 32679061 -249514603 - MADE1 DNA Mariner -1 79 1 3729 216 83 24 chr1 32679071 32679996 -249513668 - MER66B-int LTR ERV1 -5581 1095 116 2546 167 34 6 chr1 32680010 32680483 -249513181 - MER66B LTR ERV1 0 486 1 371 208 0 0 chr1 32680601 32680673 -249512991 + MIR SINE MIR 49 120 -142 707 304 111 21 chr1 32681668 32682124 -249511540 + L2 LINE L2 2784 3272 0 528 249 24 112 chr1 32682440 32682590 -249511074 + MLT1J LTR MaLR 5 167 -344 1182 144 195 104 chr1 32682590 32682773 -249510891 - MER4A LTR ERV1 -2 598 433 2098 164 0 0 chr1 32682773 32683083 -249510581 + AluSx SINE Alu 1 310 -2 1182 144 195 104 chr1 32683083 32683447 -249510217 - MER4A LTR ERV1 -167 433 1 528 249 24 112 chr1 32683447 32683482 -249510182 + MLT1J LTR MaLR 167 166 -345 309 118 0 0 chr1 32683482 32683533 -249510131 + (TG)n Simple_repeat Simple_repeat 2 52 0 528 249 24 112 chr1 32683533 32683595 -249510069 + MLT1J LTR MaLR 165 231 -280 381 279 0 10 chr1 32683603 32683707 -249509957 + MIR SINE MIR 63 165 -97 236 386 88 23 chr1 32683710 32683881 -249509783 - L3 LINE CR1 -496 1081 900 207 299 65 37 chr1 32684035 32684142 -249509522 + L2 LINE L2 3203 3312 -1 189 247 204 11 chr1 32684469 32684562 -249509102 + MIR SINE MIR 34 144 -118 249 286 63 71 chr1 32685867 32685993 -249507671 + L2 LINE L2 3181 3305 -8 369 0 0 0 chr1 32686188 32686229 -249507435 + (TG)n Simple_repeat Simple_repeat 2 42 0 2052 221 20 0 chr1 32686261 32686704 -249506960 - MER82 DNA MER2_type -1 652 201 1771 235 162 24 chr1 32686822 32687482 -249506182 - LTR1B LTR ERV1 -75 751 1 341 184 0 40 chr1 32687482 32687554 -249506110 - MER82 DNA MER2_type -447 206 138 3388 214 60 105 chr1 32687644 32687898 -249505766 - L1MC/D LINE L1 -743 5663 5399 3161 145 35 9 chr1 32687898 32688443 -249505221 - MER89 LTR ERV1 0 559 1 3388 214 60 105 chr1 32688443 32688898 -249504766 - L1MC/D LINE L1 -1007 5399 4925 479 162 0 0 chr1 32688898 32688972 -249504692 - AluJ/FRAM SINE Alu -15 297 224 3388 214 60 105 chr1 32688972 32689669 -249503995 - L1MC/D LINE L1 -1481 4925 4198 2284 98 3 0 chr1 32689669 32689997 -249503667 - AluSx SINE Alu 0 312 4 3388 214 60 105 chr1 32689997 32690151 -249503513 - L1MC/D LINE L1 -2208 4198 4039 216 86 0 0 chr1 32690151 32690186 -249503478 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3388 214 60 105 chr1 32690186 32690727 -249502937 - L1MC/D LINE L1 -2367 4039 3733 2191 244 64 15 chr1 32690749 32692072 -249501592 - L1MDb LINE L1 -3014 3392 876 2097 94 23 55 chr1 32692162 32692469 -249501195 + AluSx SINE Alu 1 297 -15 382 310 9 0 chr1 32692807 32692920 -249500744 - MLT1G LTR MaLR -366 224 111 888 261 64 47 chr1 32693441 32693960 -249499704 + MLT1G LTR MaLR 18 560 -7 315 302 42 37 chr1 32694078 32694391 -249499273 + MLT1G-int LTR MaLR 292 601 -770 3324 151 31 0 chr1 32694782 32695337 -249498327 - LTR31 LTR ERV1 -1 618 47 807 274 120 33 chr1 32695832 32696347 -249497317 + MLT1G LTR MaLR 3 562 -5 3948 265 66 31 chr1 32696412 32698102 -249495562 - L2 LINE L2 -1 3312 1549 748 297 63 48 chr1 32698226 32698620 -249495044 - L1MC4a LINE L1 -1897 5911 5512 309 342 8 8 chr1 32699519 32699639 -249494025 + MIR3 SINE MIR 49 168 -40 3294 224 91 19 chr1 32699651 32700339 -249493325 - L1MC3 LINE L1 -15 7770 6988 216 67 0 0 chr1 32700339 32700369 -249493295 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3294 224 91 19 chr1 32700369 32700671 -249492993 - L1MC3 LINE L1 -797 6988 6709 467 338 36 14 chr1 32700911 32701130 -249492534 + MLT1K LTR MaLR 41 264 -324 910 126 224 32 chr1 32701144 32701437 -249492227 - MER31B LTR ERV1 0 466 1 348 299 51 45 chr1 32701479 32701656 -249492008 + MLT1K LTR MaLR 338 515 -73 730 254 15 45 chr1 32701947 32702148 -249491516 - MIR3 SINE MIR -2 206 12 2491 194 13 13 chr1 32702401 32702946 -249490718 + LTR27 LTR ERV1 3 1253 -134 564 207 7 36 chr1 32702969 32703109 -249490555 + LTR27 LTR ERV1 501 636 0 198 322 56 11 chr1 32703168 32703258 -249490406 - MIR SINE MIR -18 244 151 262 228 13 76 chr1 32703337 32703416 -249490248 - MIR SINE MIR -107 155 82 452 206 56 54 chr1 32703983 32704161 -249489503 - MIR SINE MIR -52 156 15 502 311 14 0 chr1 32704764 32704912 -249488752 + MIR SINE MIR 2 151 -111 1073 190 29 110 chr1 32704985 32705596 -249488068 + MER4C LTR ERV1 1 465 0 451 232 24 24 chr1 32706565 32706690 -249486974 - MIR SINE MIR -119 143 19 2095 191 25 17 chr1 32708926 32709422 -249484242 + Tigger7 DNA MER2_type 34 2487 0 285 294 119 28 chr1 32709422 32709599 -249484065 - L3 LINE CR1 -319 1258 1066 322 260 163 8 chr1 32710075 32710198 -249483466 + MIR SINE MIR 13 154 -108 283 197 16 16 chr1 32710599 32710660 -249483004 - L2 LINE L2 -664 2650 2590 348 308 115 0 chr1 32711148 32711278 -249482386 - MIR SINE MIR -7 255 111 334 273 67 20 chr1 32711496 32711697 -249481967 + MIR SINE MIR 20 227 -35 306 231 13 39 chr1 32713079 32713157 -249480507 - L2 LINE L2 -649 2665 2590 306 271 178 8 chr1 32714066 32714195 -249479469 + MIR3 SINE MIR 41 191 -17 800 270 55 42 chr1 32714321 32714725 -249478939 + LTR16C LTR ERVL 83 491 0 438 229 0 0 chr1 32714876 32714959 -249478705 + MER47B DNA MER2_type 1 83 -335 3218 141 69 0 chr1 32714971 32715519 -249478145 + LTR38B LTR ERV1 1 586 -24 1559 162 44 0 chr1 32715536 32715807 -249477857 + MER47B DNA MER2_type 135 417 -1 1924 132 3 21 chr1 32715872 32716180 -249477484 + AluSq SINE Alu 1 303 0 413 250 22 43 chr1 32716394 32716578 -249477086 + (TGAA)n Simple_repeat Simple_repeat 1 180 0 253 326 17 17 chr1 32716568 32716743 -249476921 + (TAAA)n Simple_repeat Simple_repeat 3 177 0 * 195 250 33 17 chr1 32717286 32717346 -249476318 + MIR SINE MIR 92 152 -56 346 245 20 49 chr1 32717441 32717543 -249476121 + L2 LINE L2 3174 3272 0 293 277 134 27 chr1 32719088 32719200 -249474464 + MIR SINE MIR 28 151 -111 305 240 52 5 chr1 32719582 32719693 -249473971 - MIR SINE MIR -58 150 72 361 299 60 8 chr1 32719705 32719839 -249473825 - L2 LINE L2 -65 3248 3108 219 69 0 0 chr1 32719972 32720001 -249473663 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 344 223 27 62 chr1 32720307 32720419 -249473245 - MIR SINE MIR -71 137 30 * 541 317 29 10 chr1 32720365 32720573 -249473091 + MIR SINE MIR 23 234 -28 244 246 46 0 chr1 32720683 32720748 -249472916 - MIR SINE MIR -111 151 84 355 291 67 68 chr1 32720768 32721103 -249472561 - L1MCa LINE L1 -2950 3476 2087 852 171 0 0 chr1 32721104 32721233 -249472431 - FLAM_A SINE Alu -4 129 1 261 317 67 35 chr1 32721416 32721700 -249471964 - HAL1 LINE L1 -762 1745 1453 374 178 100 11 chr1 32721753 32721854 -249471810 - L1ME3A LINE L1 -137 6027 5919 291 317 50 52 chr1 32722038 32722308 -249471356 - L1MCa LINE L1 -4866 1550 1280 4383 165 11 8 chr1 32722308 32723028 -249470636 - MER72 LTR ERV1 0 722 1 291 317 50 52 chr1 32723028 32723195 -249470469 - L1MCa LINE L1 -5136 1280 1114 193 207 35 17 chr1 32723441 32723499 -249470165 + L3b LINE CR1 1102 1160 -423 614 215 6 74 chr1 32723574 32723737 -249469927 - MIR SINE MIR -10 252 101 260 324 34 68 chr1 32723777 32723925 -249469739 + MIR3 SINE MIR 34 176 -32 203 269 72 12 chr1 32724836 32724921 -249468743 + MIR SINE MIR 45 133 -93 195 262 0 0 chr1 32725265 32725307 -249468357 + MIR SINE MIR 215 256 -6 351 0 0 0 chr1 32725800 32725839 -249467825 + (TAA)n Simple_repeat Simple_repeat 2 40 0 192 77 0 0 chr1 32726535 32726561 -249467103 + (CAGGC)n Simple_repeat Simple_repeat 4 29 0 416 280 150 16 chr1 32726698 32727398 -249466266 - L2 LINE L2 -10 3303 2508 326 256 39 121 chr1 32727770 32728051 -249465613 + MLT1I LTR MaLR 91 348 -61 1154 273 70 38 chr1 32728103 32728576 -249465088 + LTR53 LTR ERVL 21 508 -11 237 312 48 0 chr1 32728624 32728749 -249464915 + L1ME4a LINE L1 5987 6117 -4 225 253 36 36 chr1 32728960 32729043 -249464621 + MIR3 SINE MIR 111 193 -15 962 248 29 25 chr1 32729055 32729297 -249464367 - MIR SINE MIR 0 262 20 198 340 131 21 chr1 32729400 32729591 -249464073 - MIR SINE MIR -18 244 33 522 279 55 16 chr1 32729601 32729784 -249463880 - MIR SINE MIR -71 191 2 1002 195 0 0 chr1 32730393 32730562 -249463102 - FRAM SINE Alu -10 166 1 199 333 0 0 chr1 32730734 32730782 -249462882 + MIR SINE MIR 44 91 -117 314 293 12 0 chr1 32731042 32731124 -249462540 + L2 LINE L2 3230 3312 -1 238 269 87 0 chr1 32731734 32731838 -249461826 + MLT1L LTR MaLR 492 604 -11 407 207 147 0 chr1 32733636 32733752 -249459912 + MIR SINE MIR 15 147 -115 328 255 104 9 chr1 32735148 32735254 -249458410 + L2 LINE L2 3144 3259 -13 397 298 122 33 chr1 32735612 32736038 -249457626 + L2 LINE L2 2809 3272 0 604 291 23 6 chr1 32736062 32736237 -249457427 - MIR SINE MIR -12 250 73 403 305 30 8 chr1 32737071 32737202 -249456462 + MIR3 SINE MIR 37 170 -38 732 222 5 6 chr1 32737723 32738789 -249454875 + (TG)n Simple_repeat Simple_repeat 1 1065 0 200 208 0 19 chr1 32739183 32739236 -249454428 + (CCCTG)n Simple_repeat Simple_repeat 4 55 0 191 176 0 29 chr1 32739391 32739425 -249454239 - MIR SINE MIR -58 150 118 541 266 76 16 chr1 32739494 32739678 -249453986 + MIR SINE MIR 46 240 -22 701 282 17 21 chr1 32740274 32740508 -249453156 + MIR SINE MIR 28 260 -2 330 266 0 0 chr1 32740567 32740655 -249453009 + L1MC1 LINE L1 5190 5278 -863 1861 167 10 0 chr1 32740655 32740943 -249452721 + AluJb SINE Alu 1 291 -21 1742 160 92 37 chr1 32740948 32741349 -249452315 + LTR44 LTR ERV1 97 519 0 6307 132 17 11 chr1 32741349 32741847 -249451817 + L1MC1 LINE L1 5279 5772 -561 2321 224 30 60 chr1 32741847 32742478 -249451186 + LTR9 LTR ERV1 1 612 0 6307 132 17 11 chr1 32742478 32743022 -249450642 + L1MC1 LINE L1 5772 6328 -5 4682 259 87 15 chr1 32743342 32744282 -249449382 + L1MC/D LINE L1 35 906 -5490 2124 124 3 16 chr1 32744282 32744589 -249449075 + AluSx SINE Alu 3 305 -7 4682 259 87 15 chr1 32744589 32745290 -249448374 + L1MC/D LINE L1 906 1794 -4602 180 0 0 0 chr1 32745322 32745342 -249448322 + (CA)n Simple_repeat Simple_repeat 1 20 0 472 291 0 6 chr1 32745370 32745552 -249448112 + L1MC/D LINE L1 4425 4605 -1610 2456 227 50 16 chr1 32745568 32747125 -249446539 + L1MC/D LINE L1 4654 5711 -600 8003 235 65 20 chr1 32747125 32749439 -249444225 + L1ME1 LINE L1 2515 4977 -1187 1598 178 6 68 chr1 32749439 32749760 -249443904 + AluJb SINE Alu 1 301 -11 8003 235 65 20 chr1 32749760 32750220 -249443444 + L1ME1 LINE L1 4977 5415 -749 1704 222 71 31 chr1 32750258 32750766 -249442898 + L1ME1 LINE L1 5488 6015 -151 646 207 40 0 chr1 32750766 32750916 -249442748 + L1MA10 LINE L1 6175 6330 -4 400 280 24 16 chr1 32751584 32751709 -249441955 - L2 LINE L2 -23 3290 3165 961 229 9 14 chr1 32751747 32751965 -249441699 + MER20 DNA MER1_type 2 218 -1 191 384 98 0 chr1 32752130 32752242 -249441422 + MIR SINE MIR 23 145 -63 361 250 204 0 chr1 32752333 32752441 -249441223 - L2 LINE L2 0 3313 3184 272 261 0 0 chr1 32753028 32753093 -249440571 + MIR SINE MIR 81 145 -63 333 255 185 19 chr1 32753239 32753396 -249440268 + MIR SINE MIR 2 184 -78 192 125 0 0 chr1 32753424 32753456 -249440208 + (CCCCCA)n Simple_repeat Simple_repeat 5 36 0 192 77 0 0 chr1 32753680 32753706 -249439958 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 231 88 0 0 chr1 32753983 32754017 -249439647 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 394 270 145 30 chr1 32754618 32754818 -249438846 + MIR SINE MIR 22 244 -18 281 191 22 45 chr1 32754873 32754962 -249438702 - MLT1K LTR MaLR -11 577 491 421 278 9 0 chr1 32755751 32755859 -249437805 - MIR SINE MIR 0 262 154 285 344 57 0 chr1 32756145 32756267 -249437397 - MIR3 SINE MIR -73 135 7 * 333 331 57 6 chr1 32756240 32756386 -249437278 + MIR3 SINE MIR 41 197 -11 2525 99 43 8 chr1 32756386 32756738 -249436926 - THE1B LTR MaLR 0 364 1 180 241 35 17 chr1 32756745 32756803 -249436861 - MIR SINE MIR -140 122 64 * 254 301 21 43 chr1 32757178 32757271 -249436393 - MIR SINE MIR -6 256 166 1508 198 0 15 chr1 32757438 32757711 -249435953 + AluJo SINE Alu 40 308 -4 431 252 122 16 chr1 32757747 32757870 -249435794 + MIR SINE MIR 18 153 -109 398 331 0 8 chr1 32757868 32757989 -249435675 - MIR SINE MIR -130 132 13 * 645 171 0 0 chr1 32759943 32760089 -249433575 + (TG)n Simple_repeat Simple_repeat 1 146 0 349 306 236 5 chr1 32760447 32760663 -249433001 + L3 LINE CR1 1312 1577 0 182 259 17 17 chr1 32760981 32761039 -249432625 + MIR3 SINE MIR 120 177 -31 232 327 0 35 chr1 32762325 32762438 -249431226 + L2 LINE L2 3167 3275 -38 206 162 27 0 chr1 32762450 32762487 -249431177 + GA-rich Low_complexity Low_complexity 3 40 0 361 272 178 11 chr1 32762512 32762692 -249430972 - L2 LINE L2 -94 3219 3010 352 163 71 61 chr1 32762706 32762804 -249430860 - MIR3 SINE MIR -46 162 64 205 330 36 18 chr1 32762852 32762964 -249430700 - MIR SINE MIR -46 216 103 2581 110 56 17 chr1 32763929 32764365 -249429299 - MLT2A1 LTR ERVL 0 515 32 355 221 32 0 chr1 32764481 32764639 -249429025 + (TA)n Simple_repeat Simple_repeat 2 164 0 333 261 33 22 chr1 32764658 32764750 -249428914 - L1MC4 LINE L1 -1337 6705 6613 399 211 33 3 chr1 32764761 32765075 -249428589 + (TA)n Simple_repeat Simple_repeat 1 323 0 259 138 75 11 chr1 32765089 32765183 -249428481 + (TA)n Simple_repeat Simple_repeat 1 100 0 268 243 57 64 chr1 32765237 32765377 -249428287 - MLT1J LTR MaLR -39 472 334 1973 145 24 32 chr1 32765581 32765960 -249427704 + L1PA16 LINE L1 5790 6165 -1 933 199 0 0 chr1 32766057 32766218 -249427446 + MIR SINE MIR 6 166 -96 848 279 112 32 chr1 32766491 32766993 -249426671 - L1ME4a LINE L1 -21 6100 5559 720 232 80 12 chr1 32767434 32767722 -249425942 - MLT1F LTR MaLR 0 542 193 183 100 0 0 chr1 32768525 32768555 -249425109 + (GGAGA)n Simple_repeat Simple_repeat 3 32 0 3731 155 30 23 chr1 32768685 32770845 -249422819 - L1ME2 LINE L1 -78 6086 4800 * 4130 251 94 11 chr1 32770843 32771205 -249422459 - L1ME2 LINE L1 -1918 4228 3897 1794 155 0 38 chr1 32771205 32771496 -249422168 - AluJb SINE Alu -32 280 1 4130 251 94 11 chr1 32771496 32772605 -249421059 - L1ME2 LINE L1 -2249 3897 2635 1640 173 10 36 chr1 32772876 32773177 -249420487 + AluJo SINE Alu 1 293 -19 207 200 0 0 chr1 32773354 32773394 -249420270 + (CATA)n Simple_repeat Simple_repeat 2 41 0 480 273 106 58 chr1 32774302 32774577 -249419087 + L2 LINE L2 3026 3313 0 591 321 60 15 chr1 32775249 32775517 -249418147 - L1ME4a LINE L1 -268 5853 5574 336 83 0 0 chr1 32775668 32775716 -249417948 + (TG)n Simple_repeat Simple_repeat 1 48 0 239 218 105 121 chr1 32775734 32775858 -249417806 - MIR SINE MIR -30 232 111 341 311 123 23 chr1 32775860 32776079 -249417585 + MIR SINE MIR 4 244 -18 233 298 0 0 chr1 32777839 32777908 -249415756 - MIR SINE MIR -62 146 77 430 176 108 29 chr1 32778766 32778868 -249414796 - MIR SINE MIR -61 147 38 321 310 0 0 chr1 32778888 32778975 -249414689 + (TG)n Simple_repeat Simple_repeat 2 88 0 200 276 186 30 chr1 32780078 32780342 -249413322 + L2 LINE L2 2564 2868 -446 663 241 49 30 chr1 32780469 32780672 -249412992 - MIR SINE MIR -16 246 40 214 333 74 0 chr1 32780804 32780912 -249412752 + L2 LINE L2 3150 3265 -7 329 269 121 86 chr1 32781370 32781708 -249411956 + L2 LINE L2 2829 3178 -94 241 248 16 108 chr1 32782365 32782494 -249411170 - L2 LINE L2 -57 3256 3140 255 299 198 34 chr1 32782544 32782812 -249410852 + L2 LINE L2 2578 2889 -425 231 175 35 35 chr1 32782985 32783042 -249410622 + L2 LINE L2 3139 3195 -77 879 310 8 12 chr1 32783408 32783653 -249410011 + MIR SINE MIR 19 262 0 339 250 30 60 chr1 32783783 32783804 -249409860 + MIR SINE MIR 49 69 -139 1860 171 13 3 chr1 32783804 32784103 -249409561 - AluJo SINE Alu -10 302 1 339 250 30 60 chr1 32784103 32784181 -249409483 + MIR SINE MIR 69 145 -63 248 221 59 0 chr1 32784210 32784278 -249409386 + CT-rich Low_complexity Low_complexity 1 72 0 190 297 108 0 chr1 32784585 32784696 -249408968 + L2 LINE L2 2843 2965 -307 1104 253 104 69 chr1 32784709 32785247 -249408417 - MLT1K LTR MaLR -10 578 22 885 260 51 4 chr1 32785418 32785653 -249408011 - MIR SINE MIR 0 262 17 380 311 59 17 chr1 32785729 32785848 -249407816 + L2 LINE L2 3118 3241 -31 186 198 0 49 chr1 32785953 32786034 -249407630 + CT-rich Low_complexity Low_complexity 3 79 0 778 252 70 14 chr1 32786722 32786936 -249406728 - MIR SINE MIR -29 233 8 422 212 26 35 chr1 32787411 32787524 -249406140 - L2 LINE L2 -15 3298 3187 498 271 174 0 chr1 32787601 32787819 -249405845 - MER102b DNA MER1_type -3 338 83 250 176 20 20 chr1 32788181 32788232 -249405432 + MER4-int LTR ERV1 1105 1155 -5443 820 229 49 0 chr1 32788409 32788632 -249405032 - MIR SINE MIR -14 248 15 190 274 148 59 chr1 32788694 32788829 -249404835 - MIR SINE MIR -30 232 86 589 252 129 29 chr1 32789518 32789728 -249403936 - MIR SINE MIR -13 249 19 187 245 19 19 chr1 32790162 32790215 -249403449 + MIR3 SINE MIR 144 196 -12 554 211 63 14 chr1 32790447 32790589 -249403075 + MIR SINE MIR 35 183 -79 438 222 65 0 chr1 32790992 32791100 -249402564 + MIR SINE MIR 61 175 -87 21 0 0 0 chr1 32791841 32791862 -249401802 + AT_rich Low_complexity Low_complexity 1 21 0 239 406 0 0 chr1 32792065 32792203 -249401461 + (TG)n Simple_repeat Simple_repeat 1 138 0 927 234 37 11 chr1 32792391 32792660 -249401004 - MLT2D LTR ERVL -48 366 91 566 328 43 8 chr1 32792736 32792971 -249400693 - MIR SINE MIR -18 244 2 418 267 53 0 chr1 32793306 32793437 -249400227 - MLT1I LTR MaLR -22 387 250 533 330 20 5 chr1 32794016 32794213 -249399451 + MIR SINE MIR 31 230 -32 267 177 123 62 chr1 32795483 32795613 -249398051 - MLT1K LTR MaLR -173 415 278 217 147 29 73 chr1 32797429 32797497 -249396167 + T-rich Low_complexity Low_complexity 3 67 0 334 350 0 10 chr1 32797853 32797956 -249395708 - MIR SINE MIR -86 122 21 276 330 30 0 chr1 32798231 32798331 -249395333 + MIR SINE MIR 51 153 -109 494 284 34 14 chr1 32799024 32799172 -249394492 + MIR3 SINE MIR 48 198 -10 224 302 66 0 chr1 32799397 32799503 -249394161 + MIR SINE MIR 13 125 -137 1886 166 7 0 chr1 32800184 32800479 -249393185 + AluJo SINE Alu 1 297 -15 262 385 21 21 chr1 32800481 32800624 -249393040 - MIR SINE MIR -103 159 17 190 275 87 0 chr1 32801049 32801118 -249392546 - MIR SINE MIR -77 185 111 595 262 55 14 chr1 32801146 32801291 -249392373 - MIR3 SINE MIR -37 171 21 249 339 93 8 chr1 32801371 32801489 -249392175 + MIR SINE MIR 17 144 -64 197 349 108 33 chr1 32802180 32802392 -249391272 - L2 LINE L2 -2 3270 3043 609 284 61 40 chr1 32802408 32802785 -249390879 - LTR16C LTR ERVL -10 481 97 244 312 9 28 chr1 32802897 32803006 -249390658 - L2 LINE L2 -231 3041 2935 267 104 0 0 chr1 32803187 32803235 -249390429 + (GA)n Simple_repeat Simple_repeat 1 48 0 245 111 0 0 chr1 32803741 32803777 -249389887 + MIR SINE MIR 219 254 -8 210 285 124 66 chr1 32803838 32803975 -249389689 + L2 LINE L2 3123 3267 -5 210 118 0 0 chr1 32804550 32804584 -249389080 + (TC)n Simple_repeat Simple_repeat 1 34 0 312 278 90 28 chr1 32804847 32804991 -249388673 + MIR SINE MIR 13 165 -97 279 314 17 0 chr1 32805850 32805968 -249387696 - MIR SINE MIR -59 149 30 458 235 42 54 chr1 32806605 32806771 -249386893 + MIR3 SINE MIR 23 186 -22 242 191 107 48 chr1 32807511 32807595 -249386069 + MIR SINE MIR 18 106 -102 384 234 234 7 chr1 32808021 32808166 -249385498 - MIR SINE MIR -16 246 69 239 272 76 11 chr1 32808295 32808387 -249385277 - L3 LINE CR1 -214 1363 1266 4847 235 49 47 chr1 32808462 32809633 -249384031 - L1M4 LINE L1 -1156 4990 3823 2233 117 3 19 chr1 32809633 32809949 -249383715 - AluSp SINE Alu -2 311 1 4847 235 49 47 chr1 32809949 32810089 -249383575 - L1M4 LINE L1 -2323 3823 3685 1159 173 48 122 chr1 32810089 32810483 -249383181 - MLT1A1 LTR MaLR 0 365 1 4847 235 49 47 chr1 32810483 32810640 -249383024 - L1M4 LINE L1 -2461 3685 3530 1891 149 19 23 chr1 32810640 32810948 -249382716 - AluJo SINE Alu -5 307 1 4847 235 49 47 chr1 32810948 32811207 -249382457 - L1M4 LINE L1 -2616 3530 3257 963 187 44 75 chr1 32811361 32811563 -249382101 - LTR57-int LTR ERVL -4059 1284 1092 2413 94 0 0 chr1 32811563 32811861 -249381803 - AluSg SINE Alu -12 298 1 963 187 44 75 chr1 32811861 32811952 -249381712 - LTR57-int LTR ERVL -4251 1092 1000 892 188 51 113 chr1 32811952 32812022 -249381642 - MER65-int LTR ERV1 -2678 2193 1852 326 260 14 0 chr1 32812068 32812141 -249381523 + MIR SINE MIR 29 102 -160 345 296 51 28 chr1 32812180 32812356 -249381308 + L2 LINE L2 2911 3090 -182 197 353 96 32 chr1 32812492 32812648 -249381016 + L2 LINE L2 3106 3271 -1 347 247 0 0 chr1 32812728 32812809 -249380855 - MIR SINE MIR -80 128 48 1083 231 80 46 chr1 32812840 32813230 -249380434 + MLT1C LTR MaLR 56 458 -9 225 328 0 0 chr1 32813876 32813937 -249379727 - MIR SINE MIR -115 147 87 459 297 57 19 chr1 32813955 32814164 -249379500 + MIR SINE MIR 29 245 -17 754 305 25 49 chr1 32814329 32814604 -249379060 + MERVL LTR ERVL 4903 5166 -319 2078 151 7 0 chr1 32814604 32814909 -249378755 - AluSx SINE Alu -3 309 3 754 305 25 49 chr1 32814909 32815040 -249378624 + MERVL LTR ERVL 5166 5299 -186 461 221 97 7 chr1 32815441 32815586 -249378078 + LTR41 LTR ERVL 1 158 -615 442 254 158 4 chr1 32815905 32816133 -249377531 + LTR41 LTR ERVL 533 795 0 304 289 33 16 chr1 32816205 32816326 -249377338 - L2 LINE L2 0 3272 3150 * 334 268 92 39 chr1 32816306 32816459 -249377205 + MIR SINE MIR 31 191 -71 2069 165 14 11 chr1 32816473 32816837 -249376827 - MER47A DNA MER2_type -1 365 1 245 274 179 19 chr1 32816846 32816952 -249376712 - MIR3 SINE MIR -78 130 8 269 259 17 0 chr1 32817534 32817592 -249376072 - MIR SINE MIR -85 177 119 298 284 0 11 chr1 32817610 32817705 -249375959 - L1MC4 LINE L1 -1486 6556 6463 2326 202 2 13 chr1 32817881 32818337 -249375327 + MLT2B2 LTR ERVL 1 451 -64 443 208 93 28 chr1 32819685 32819830 -249373834 - MIR SINE MIR -62 146 46 245 275 14 14 chr1 32819989 32820058 -249373606 - L2 LINE L2 -1 3312 3244 21 36 0 0 chr1 32820142 32820170 -249373494 + AT_rich Low_complexity Low_complexity 1 28 0 3814 278 70 34 chr1 32820705 32823694 -249369970 + L1MEc LINE L1 3 5231 -984 1846 107 17 3 chr1 32823798 32824096 -249369568 + L1P LINE L1 4764 5065 -1081 676 233 112 60 chr1 32824094 32824890 -249368774 - L1M4 LINE L1 -1089 5057 4140 * 6703 69 8 12 chr1 32824893 32826273 -249367391 + L1PA7 LINE L1 4773 6150 -4 261 143 0 86 chr1 32826282 32826307 -249367357 + MLT2B2 LTR ERVL 401 427 -37 336 24 0 0 chr1 32826307 32826348 -249367316 + (CA)n Simple_repeat Simple_repeat 1 41 0 261 143 0 86 chr1 32826348 32826392 -249367272 + MLT2B2 LTR ERVL 427 464 0 537 283 131 5 chr1 32827322 32827513 -249366151 + MIR SINE MIR 48 262 0 208 316 120 30 chr1 32827575 32827708 -249365956 + L2 LINE L2 2941 3085 -187 257 236 18 0 chr1 32828503 32828558 -249365106 + (TCCA)n Simple_repeat Simple_repeat 2 57 0 537 161 0 24 chr1 32828615 32828739 -249364925 + (TCCA)n Simple_repeat Simple_repeat 3 123 0 309 237 62 124 chr1 32829727 32830115 -249363549 + LTR67 LTR ERVL 101 464 -93 315 280 43 32 chr1 32830115 32830208 -249363456 + MIR SINE MIR 107 200 -62 511 315 61 99 chr1 32830884 32831329 -249362335 + L2 LINE L2 2844 3271 -1 496 258 116 11 chr1 32831341 32831531 -249362133 - MIR SINE MIR -14 248 39 196 239 268 0 chr1 32832551 32832622 -249361042 + MIR SINE MIR 46 135 -127 * 225 412 18 18 chr1 32832621 32832786 -249360878 - L2 LINE L2 -460 2854 2690 2116 113 28 0 chr1 32833304 32833595 -249360069 - AluSx SINE Alu -7 305 7 303 267 26 0 chr1 32833603 32833688 -249359976 - MIR SINE MIR -58 150 95 283 292 25 42 chr1 32833685 32833805 -249359859 - MIR3 SINE MIR -2 206 89 * 238 250 69 28 chr1 32833841 32833913 -249359751 - L2 LINE L2 -56 3257 3183 233 296 33 33 chr1 32834226 32834378 -249359286 + L1MC/D LINE L1 5679 5830 -1978 234 91 0 0 chr1 32834618 32834651 -249359013 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 274 241 52 0 chr1 32834652 32834710 -249358954 - L2 LINE L2 -7 3265 3205 219 297 109 25 chr1 32834709 32834911 -249358753 - L2 LINE L2 -366 2948 2730 * 337 269 66 75 chr1 32834999 32835211 -249358453 - L2 LINE L2 -64 3249 3040 1045 101 35 60 chr1 32835277 32835476 -249358188 - MER50 LTR ERV1 -9 725 532 575 270 51 28 chr1 32835541 32835756 -249357908 - MIR SINE MIR -31 231 12 311 26 0 0 chr1 32835775 32835813 -249357851 - MER50 LTR ERV1 -39 695 658 2643 238 84 10 chr1 32836754 32837687 -249355977 + L1ME1 LINE L1 5153 6162 -4 215 302 47 12 chr1 32837852 32837938 -249355726 + MIR3 SINE MIR 67 155 -53 367 305 30 0 chr1 32839033 32839164 -249354500 + MIR SINE MIR 8 142 -120 256 254 0 0 chr1 32839699 32839762 -249353902 + L3b LINE CR1 1322 1384 -199 989 265 24 28 chr1 32839829 32840078 -249353586 - MIR SINE MIR 0 262 15 228 302 62 0 chr1 32840103 32840199 -249353465 - L2 LINE L2 0 3272 3171 1234 158 9 22 chr1 32841037 32841259 -249352405 + MLT1D LTR MaLR 1 219 -286 779 160 0 13 chr1 32841265 32841415 -249352249 - MER65A LTR ERV1 0 445 298 306 244 13 39 chr1 32841416 32841494 -249352170 - MER31-int LTR ERV1 -977 3959 3884 2495 61 0 26 chr1 32841494 32841805 -249351859 - AluY SINE Alu -8 303 1 2196 191 108 82 chr1 32841824 32842848 -249350816 - MER31-int LTR ERV1 -1228 5103 4053 671 247 87 19 chr1 32842953 32843331 -249350333 - L1MEc LINE L1 -3028 3187 2641 1266 168 201 41 chr1 32843331 32843719 -249349945 + LTR7 LTR ERV1 1 450 0 1621 197 58 42 chr1 32843719 32844171 -249349493 + HERVH LTR ERV1 1 459 -7254 12192 138 5 14 chr1 32844229 32846287 -249347377 + HERVH LTR ERV1 791 2830 -4883 3914 186 13 33 chr1 32846287 32847429 -249346235 + HERVH LTR ERV1 3357 4719 -1935 273 29 0 0 chr1 32847429 32847463 -249346201 + (A)n Simple_repeat Simple_repeat 1 34 0 881 115 0 0 chr1 32847463 32847602 -249346062 + HERVH LTR ERV1 4414 4552 -3161 * 1605 130 0 0 chr1 32847592 32847853 -249345811 + HERVH LTR ERV1 5756 6016 -1697 * 3452 116 18 9 chr1 32847846 32848398 -249345266 + HERVH LTR ERV1 7157 7713 0 765 169 112 45 chr1 32848398 32848782 -249344882 + LTR7 LTR ERV1 1 450 0 2745 231 41 20 chr1 32848782 32848804 -249344860 - L1MEc LINE L1 -3570 2645 2625 4371 132 47 41 chr1 32848804 32849263 -249344401 + MER4E LTR ERV1 1 467 -312 2316 95 0 7 chr1 32849263 32849558 -249344106 - AluSc SINE Alu -16 293 1 4371 132 47 41 chr1 32849558 32849873 -249343791 + MER4E LTR ERV1 467 779 0 2745 231 41 20 chr1 32849873 32850129 -249343535 - L1MEc LINE L1 -3590 2625 2376 1877 180 7 0 chr1 32850129 32850435 -249343229 - AluJb SINE Alu -4 308 1 2745 231 41 20 chr1 32850435 32851144 -249342520 - L1MEc LINE L1 -3839 2376 1677 277 297 0 10 chr1 32851156 32851257 -249342407 + L1MEd LINE L1 1453 1552 -4864 2256 140 65 30 chr1 32851306 32851818 -249341846 + MLT2A2 LTR ERVL 1 554 0 455 242 132 21 chr1 32851857 32852047 -249341617 + L1MEd LINE L1 1468 1678 -4748 726 238 11 16 chr1 32852057 32852242 -249341422 - L1MEc LINE L1 -6177 219 36 367 300 36 21 chr1 32852247 32852387 -249341277 + L2 LINE L2 3154 3295 -18 2384 89 3 7 chr1 32852495 32852797 -249340867 + AluSp SINE Alu 12 312 -1 537 255 100 22 chr1 32853015 32853246 -249340418 + MLT1J LTR MaLR 24 272 -239 219 152 0 0 chr1 32854355 32854388 -249339276 + MIR SINE MIR 117 149 -113 257 215 77 15 chr1 32854784 32854849 -249338815 - MIR SINE MIR -37 225 157 2335 104 3 3 chr1 32854983 32855290 -249338374 + AluSq SINE Alu 1 307 -6 318 320 0 0 chr1 32856108 32856345 -249337319 + (CA)n Simple_repeat Simple_repeat 1 237 0 380 303 6 0 chr1 32856383 32856561 -249337103 + (CA)n Simple_repeat Simple_repeat 2 180 0 325 292 0 18 chr1 32856582 32856750 -249336914 + (CATATA)n Simple_repeat Simple_repeat 6 170 0 2310 106 0 3 chr1 32856976 32857277 -249336387 - AluSq SINE Alu -13 300 1 1972 184 59 12 chr1 32857667 32858090 -249335574 + MER65A LTR ERV1 1 443 -2 2792 256 170 26 chr1 32858322 32858548 -249335116 - L2 LINE L2 -7 3306 3114 1964 120 0 34 chr1 32858548 32858860 -249334804 + AluSx SINE Alu 1 302 0 2792 256 170 26 chr1 32858860 32860181 -249333483 - L2 LINE L2 -199 3114 1530 272 296 85 20 chr1 32860417 32860664 -249333000 - L1ME LINE L1 -335 5786 5524 200 276 52 52 chr1 32860879 32860995 -249332669 + MIR SINE MIR 10 125 -137 1100 219 66 38 chr1 32861063 32861351 -249332313 - MLT2B3 LTR ERVL -4 550 255 722 169 174 0 chr1 32861354 32861526 -249332138 + L1M4c LINE L1 625 826 -5558 2165 216 28 80 chr1 32861526 32861830 -249331834 - L1M4c LINE L1 -5776 608 351 2088 116 0 24 chr1 32861830 32862124 -249331540 - AluSq SINE Alu -26 287 1 2165 216 28 80 chr1 32862124 32862431 -249331233 - L1M4c LINE L1 -6033 351 29 229 298 0 0 chr1 32862439 32862496 -249331168 + MIR SINE MIR 85 141 -67 947 109 19 13 chr1 32862504 32862660 -249331004 + L1MA8 LINE L1 6129 6285 -6 381 272 163 53 chr1 32863031 32863351 -249330313 + MLT1K LTR MaLR 205 559 -29 460 324 28 0 chr1 32863791 32863936 -249329728 - MIR3 SINE MIR -24 184 36 359 327 54 0 chr1 32864665 32864833 -249328831 - MIR SINE MIR -7 255 79 378 260 22 50 chr1 32865745 32865871 -249327793 + MIR SINE MIR 26 153 -62 325 289 169 6 chr1 32865914 32866080 -249327584 + MIR SINE MIR 70 262 0 430 251 140 23 chr1 32866800 32866971 -249326693 - MIR SINE MIR -70 192 2 403 255 26 46 chr1 32867012 32867165 -249326499 - MIR SINE MIR -78 184 35 334 264 0 12 chr1 32868202 32868294 -249325370 + MIR SINE MIR 50 140 -68 267 289 144 10 chr1 32868361 32868465 -249325199 + L2 LINE L2 3155 3272 0 5063 111 0 21 chr1 32869082 32869851 -249323813 + LTR17 LTR ERV1 1 753 -27 497 185 11 0 chr1 32869851 32869943 -249323721 + LTR17 LTR ERV1 688 780 0 561 177 0 24 chr1 32871268 32871392 -249322272 - MER63 DNA MER1_type -33 1029 909 1047 252 0 8 chr1 32871421 32871654 -249322010 - MER63 DNA MER1_type -138 924 694 590 233 10 31 chr1 32871654 32871847 -249321817 - LTR41 LTR ERVL 0 773 585 524 253 36 53 chr1 32872078 32872290 -249321374 - LTR41 LTR ERVL -556 239 1 487 218 9 9 chr1 32872448 32872558 -249321106 - MIR SINE MIR -51 211 102 621 329 203 8 chr1 32872614 32872988 -249320676 - L3 LINE CR1 -88 1489 1043 181 315 101 34 chr1 32873029 32873178 -249320486 + MIR SINE MIR 96 254 -8 198 321 19 0 chr1 32873244 32873297 -249320367 - MIR SINE MIR -136 72 19 226 270 176 0 chr1 32874071 32874145 -249319519 + L2 LINE L2 3225 3311 -2 1865 204 226 26 chr1 32874678 32875223 -249318441 - MLT1E1 LTR MaLR 0 654 1 969 220 119 39 chr1 32875556 32875893 -249317771 - MLT1A1 LTR MaLR 0 365 2 214 213 85 0 chr1 32876629 32876676 -249316988 + MIR SINE MIR 76 126 -82 189 296 28 14 chr1 32876987 32877058 -249316606 - MIR3 SINE MIR -8 200 129 1493 298 61 49 chr1 32877060 32877131 -249316533 - L1MCc LINE L1 -4191 2931 2862 2488 137 64 15 chr1 32877131 32877539 -249316125 - MSTA LTR MaLR 0 428 1 1493 298 61 49 chr1 32877539 32878574 -249315090 - L1MCc LINE L1 -4260 2862 1811 1050 199 216 6 chr1 32878589 32878959 -249314705 - L1MCc LINE L1 -4909 1513 1073 275 254 102 8 chr1 32879455 32879573 -249314091 - L1MCc LINE L1 -6038 385 257 2000 96 12 23 chr1 32879587 32879710 -249313954 + MER4A LTR ERV1 1 124 -540 183 42 0 0 chr1 32879710 32879734 -249313930 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2000 96 12 23 chr1 32879734 32880124 -249313540 + MER4A LTR ERV1 124 660 -4 257 216 9 72 chr1 32880169 32880280 -249313384 - L1MCa LINE L1 -6238 188 85 519 301 51 0 chr1 32880462 32880618 -249313046 + MIR3 SINE MIR 30 193 -15 185 196 78 0 chr1 32880927 32880978 -249312686 + MIR SINE MIR 88 142 -66 198 253 40 0 chr1 32881042 32881117 -249312547 + L2 LINE L2 3108 3185 -128 1259 276 94 24 chr1 32881159 32881870 -249311794 - L2 LINE L2 -1 3312 2543 366 274 106 28 chr1 32882605 32882784 -249310880 + MIR3 SINE MIR 1 193 -15 377 312 153 12 chr1 32882952 32883122 -249310542 - MIR SINE MIR -48 214 21 876 302 82 3 chr1 32884182 32884487 -249309177 + LTR16C LTR ERVL 1 329 -162 866 283 135 31 chr1 32884770 32885104 -249308560 + L1ME3A LINE L1 5555 5950 -220 2104 121 3 7 chr1 32885104 32885402 -249308262 + AluSx SINE Alu 1 297 -15 866 283 135 31 chr1 32885402 32885519 -249308145 + L1ME3A LINE L1 5950 6053 -117 331 290 8 8 chr1 32885707 32885831 -249307833 + (TGAA)n Simple_repeat Simple_repeat 1 124 0 218 267 13 13 chr1 32885884 32885959 -249307705 + GA-rich Low_complexity Low_complexity 2 76 0 216 270 32 16 chr1 32886614 32886677 -249306987 + MIR SINE MIR 88 151 -57 414 0 0 0 chr1 32886745 32886791 -249306873 + (CA)n Simple_repeat Simple_repeat 2 47 0 294 233 78 58 chr1 32886867 32886970 -249306694 + L2 LINE L2 3168 3272 0 337 286 98 60 chr1 32888517 32888671 -249304993 + MIR SINE MIR 20 188 -74 885 174 71 47 chr1 32888671 32888883 -249304781 - MER20 DNA MER1_type 0 219 3 337 286 98 60 chr1 32888883 32888962 -249304702 + MIR SINE MIR 188 262 0 301 262 36 9 chr1 32889204 32889340 -249304324 - MIR SINE MIR -24 238 97 396 273 201 7 chr1 32889345 32889499 -249304165 - L2 LINE L2 -13 3300 3117 402 21 0 0 chr1 32889667 32889714 -249303950 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 182 209 75 15 chr1 32889724 32889791 -249303873 - L2 LINE L2 -58 3214 3144 330 241 181 0 chr1 32890027 32890143 -249303521 - MIR3 SINE MIR -71 137 1 * 465 278 33 86 chr1 32890143 32890321 -249303343 + MIR SINE MIR 77 241 -21 307 200 19 124 chr1 32890413 32890518 -249303146 - MIR SINE MIR -111 151 58 355 281 90 20 chr1 32891059 32891343 -249302321 - L1M4c LINE L1 -862 1881 1377 396 199 0 193 chr1 32891466 32891543 -249302121 - MIR SINE MIR -21 241 209 2103 116 56 0 chr1 32891543 32891827 -249301837 - AluSx SINE Alu -8 304 5 396 199 0 193 chr1 32891827 32891910 -249301754 - MIR SINE MIR -53 209 112 447 314 0 15 chr1 32891945 32892082 -249301582 + MIR3 SINE MIR 15 149 -59 1778 155 0 54 chr1 32892810 32893126 -249300538 - AluJb SINE Alu -13 299 1 245 319 92 0 chr1 32894101 32894220 -249299444 - L2 LINE L2 -10 3262 3133 335 265 183 22 chr1 32894455 32894855 -249298809 - L2 LINE L2 -340 2974 2511 876 248 16 53 chr1 32895512 32895758 -249297906 - MIR SINE MIR -6 256 20 275 349 55 7 chr1 32895914 32896060 -249297604 - MIR SINE MIR -77 185 33 357 318 47 35 chr1 32896078 32896248 -249297416 - MIR SINE MIR -78 184 13 597 296 39 5 chr1 32896373 32896579 -249297085 - MIR SINE MIR -48 214 2 398 270 184 10 chr1 32897276 32897472 -249296192 + MIR SINE MIR 13 242 -20 193 312 184 0 chr1 32897616 32897725 -249295939 - MIR SINE MIR -69 193 65 1119 268 129 24 chr1 32897802 32898354 -249295310 + MLT1L LTR MaLR 2 611 -4 182 87 0 0 chr1 32898358 32898381 -249295283 - L2 LINE L2 -27 3245 3223 573 15 0 0 chr1 32898544 32898610 -249295054 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 2107 140 7 0 chr1 32899688 32899988 -249293676 + AluSx SINE Alu 1 302 -10 386 327 6 31 chr1 32900304 32900358 -249293306 + MIR SINE MIR 16 70 -192 2564 225 14 20 chr1 32900358 32900917 -249292747 + LTR38 LTR ERV1 1 556 0 386 327 6 31 chr1 32900917 32901021 -249292643 + MIR SINE MIR 70 170 -92 197 261 0 17 chr1 32901105 32901209 -249292455 + (ATG)n Simple_repeat Simple_repeat 2 105 -13 2832 124 21 2 chr1 32901209 32901629 -249292035 - MSTA LTR MaLR 0 428 1 197 261 0 17 chr1 32901629 32901643 -249292021 + (ATG)n Simple_repeat Simple_repeat 105 118 0 225 299 75 8 chr1 32901961 32902095 -249291569 + MIR SINE MIR 61 203 -59 228 286 0 0 chr1 32902379 32902435 -249291229 + (TG)n Simple_repeat Simple_repeat 1 56 0 245 254 0 18 chr1 32902918 32902973 -249290691 + polypurine Low_complexity Low_complexity 2 55 0 229 128 0 0 chr1 32902981 32903020 -249290644 - MER31A LTR ERV1 0 485 447 293 109 0 0 chr1 32903047 32903093 -249290571 - MER31A LTR ERV1 -21 464 419 207 299 23 35 chr1 32904009 32904096 -249289568 - MIR3 SINE MIR -11 197 112 271 299 23 35 chr1 32904401 32904488 -249289176 - MIR SINE MIR -164 98 13 856 231 105 10 chr1 32904513 32904807 -249288857 + MER33 DNA MER1_type 2 323 -1 350 248 139 0 chr1 32905126 32905227 -249288437 - MIR SINE MIR -105 157 43 195 269 57 99 chr1 32905784 32906067 -249287597 - L2 LINE L2 -189 3083 2813 505 333 38 30 chr1 32906154 32906224 -249287440 - MIR SINE MIR -6 256 188 2253 125 0 0 chr1 32906224 32906535 -249287129 - AluSx SINE Alu -1 311 1 505 333 38 30 chr1 32906535 32906701 -249286963 - MIR SINE MIR -74 188 18 180 0 0 0 chr1 32907200 32907220 -249286444 + (TTAGGG)n Simple_repeat Simple_repeat 3 22 0 197 362 43 11 chr1 32907389 32907483 -249286181 + L3 LINE CR1 433 529 -1048 343 270 16 63 chr1 32907578 32907704 -249285960 - MER5A DNA MER1_type -24 165 46 2024 137 56 8 chr1 32907799 32908157 -249285507 - THE1C LTR MaLR 0 375 1 217 196 71 0 chr1 32908389 32908445 -249285219 - L2 LINE L2 0 3272 3213 202 300 50 12 chr1 32908572 32908652 -249285012 + L3 LINE CR1 1181 1263 -314 803 296 119 21 chr1 32908708 32909086 -249284578 - L2 LINE L2 -5 3267 2853 522 291 33 23 chr1 32909207 32909379 -249284285 + MIR SINE MIR 7 178 -61 367 278 47 0 chr1 32910186 32910503 -249283161 + (CCTA)n Simple_repeat Simple_repeat 1 331 0 477 343 65 5 chr1 32910710 32910926 -249282738 + MIR SINE MIR 13 241 -21 447 244 148 7 chr1 32910982 32911117 -249282547 + MIR SINE MIR 37 190 -72 205 170 19 38 chr1 32911541 32911594 -249282070 + GA-rich Low_complexity Low_complexity 4 55 0 337 298 106 0 chr1 32911791 32911942 -249281722 + MIR3 SINE MIR 22 188 -20 349 275 48 121 chr1 32912424 32912886 -249280778 + L2 LINE L2 2832 3259 -13 7175 179 127 124 chr1 32913152 32914971 -249278693 - MER52A LTR ERV1 0 1755 1 333 310 108 44 chr1 32915026 32915462 -249278202 + L2 LINE L2 2809 3272 0 668 251 34 17 chr1 32915478 32915653 -249278011 - MIR SINE MIR -12 250 73 341 331 38 8 chr1 32916479 32916612 -249277052 + MIR3 SINE MIR 18 154 -54 1308 220 59 30 chr1 32916725 32917098 -249276566 + MLT1B LTR MaLR 1 384 -6 445 74 0 25 chr1 32917533 32917614 -249276050 + (TG)n Simple_repeat Simple_repeat 2 80 0 324 154 26 115 chr1 32917851 32917929 -249275735 - L2 LINE L2 -38 3275 3205 677 294 114 13 chr1 32917937 32918165 -249275499 - MIR SINE MIR -6 256 6 424 263 140 39 chr1 32918343 32918522 -249275142 - MIR SINE MIR -51 211 15 3114 210 46 4 chr1 32918851 32919689 -249273975 + L1MDb LINE L1 483 1422 -4987 260 240 0 0 chr1 32919744 32919794 -249273870 + Tigger5 DNA MER2_type 2270 2319 -4 386 215 0 13 chr1 32919795 32919874 -249273790 - Tigger5 DNA MER2_type -2245 78 1 3052 211 75 28 chr1 32919874 32920027 -249273637 + L1MDb LINE L1 1430 1574 -4832 1643 191 10 7 chr1 32920027 32920321 -249273343 + AluJo SINE Alu 7 301 -11 3052 211 75 28 chr1 32920321 32921240 -249272424 + L1MDb LINE L1 1574 2552 -3854 308 263 11 0 chr1 32921255 32921350 -249272314 + L1MDb LINE L1 2666 2761 -3645 2416 251 26 6 chr1 32921351 32922079 -249271585 + L1M4 LINE L1 4558 5300 -846 1628 229 44 29 chr1 32922096 32922412 -249271252 + L1MCa LINE L1 159 486 -6078 1616 95 36 0 chr1 32922412 32922634 -249271030 - MER30 DNA MER1_type 0 230 1 1628 229 44 29 chr1 32922634 32922797 -249270867 + L1MCa LINE L1 486 645 -5919 1532 205 28 3 chr1 32922822 32923194 -249270470 + L1MCa LINE L1 606 995 -5070 212 281 70 0 chr1 32924331 32924388 -249269276 + MIR SINE MIR 197 257 -5 496 316 32 6 chr1 32924556 32924714 -249268950 + MIR SINE MIR 20 181 -81 408 325 0 8 chr1 32924757 32924877 -249268787 - MIR SINE MIR -109 153 35 355 313 30 8 chr1 32925111 32925245 -249268419 - MIR SINE MIR -112 150 14 * 379 290 80 35 chr1 32925243 32925443 -249268221 - MIR SINE MIR -22 240 32 273 279 35 0 chr1 32926983 32927069 -249266595 - MIR SINE MIR -79 129 41 304 280 35 77 chr1 32927134 32927277 -249266387 - MIR3 SINE MIR -71 137 1 513 218 143 20 chr1 32927397 32927544 -249266120 - MIR SINE MIR -14 248 84 514 234 127 6 chr1 32927563 32927721 -249265943 + LTR41 LTR ERVL 1 177 -596 593 231 6 26 chr1 32927977 32928133 -249265531 + LTR41 LTR ERVL 608 760 -13 281 284 52 17 chr1 32928637 32928753 -249264911 + ERVL LTR ERVL 578 697 -5067 749 321 72 17 chr1 32928793 32929254 -249264410 + ERVL LTR ERVL 850 1335 -4429 412 333 88 30 chr1 32929303 32929600 -249264064 + ERVL LTR ERVL 1404 1717 -4047 763 291 75 16 chr1 32929641 32929961 -249263703 + ERVL LTR ERVL 1803 2141 -3623 287 148 0 0 chr1 32929968 32930022 -249263642 + LTR33 LTR ERVL 415 468 -53 354 265 20 10 chr1 32930029 32930127 -249263537 + L1MC3 LINE L1 194 292 -5753 2342 205 28 61 chr1 32930228 32930613 -249263051 + L1MC3 LINE L1 500 896 -5436 1911 160 3 40 chr1 32930613 32930963 -249262701 - MER44D DNA MER2_type -2 607 1 2342 205 28 61 chr1 32930963 32931577 -249262087 + L1MC3 LINE L1 896 1480 -4852 11925 182 30 26 chr1 32931577 32934148 -249259516 + L1MC3 LINE L1 5269 7849 -354 2588 121 8 13 chr1 32934148 32934528 -249259136 + MER83B LTR ERV1 1 378 0 11925 182 30 26 chr1 32934528 32934885 -249258779 + L1MC3 LINE L1 7849 8203 0 313 341 53 31 chr1 32934995 32935221 -249258443 - L1ME3 LINE L1 -222 5940 5710 1969 142 30 3 chr1 32936229 32936566 -249257098 + MER41C LTR ERV1 1 346 -208 1326 156 0 9 chr1 32936602 32936826 -249256838 + MER41C LTR ERV1 333 554 0 2805 111 36 7 chr1 32937011 32937427 -249256237 + MSTA LTR MaLR 1 428 0 247 82 5 0 chr1 32937636 32937681 -249255983 - MIR SINE MIR -60 148 102 1226 283 138 41 chr1 32937688 32938739 -249254925 + L1MC4a LINE L1 3172 4324 -1822 235 301 110 15 chr1 32939345 32939481 -249254183 - L2 LINE L2 -213 3059 2911 2010 133 46 27 chr1 32940187 32940555 -249253109 - THE1C LTR MaLR 0 375 1 374 273 61 36 chr1 32940787 32940952 -249252712 + L1MC4a LINE L1 5612 5780 -2028 201 301 0 0 chr1 32940952 32941045 -249252619 + GA-rich Low_complexity Low_complexity 1 93 0 374 57 19 0 chr1 32941047 32941100 -249252564 + (GGGGA)n Simple_repeat Simple_repeat 5 58 0 418 274 161 57 chr1 32941538 32941768 -249251896 + L1MC4a LINE L1 5702 5955 -1853 572 315 65 17 chr1 32941791 32942023 -249251641 + MIR SINE MIR 20 262 0 1606 159 70 94 chr1 32942124 32942507 -249251157 + MLT1A2 LTR MaLR 1 374 0 22 56 0 0 chr1 32942512 32942548 -249251116 + AT_rich Low_complexity Low_complexity 1 36 0 241 289 33 11 chr1 32943234 32943324 -249250340 - L2 LINE L2 -18 3254 3163 625 259 95 26 chr1 32943352 32943584 -249250080 - MIR SINE MIR -2 260 13 212 183 28 155 chr1 32943846 32943917 -249249747 + L2 LINE L2 3180 3241 -31 473 265 124 40 chr1 32943947 32944163 -249249501 + MIR SINE MIR 27 260 -2 183 253 24 84 chr1 32944273 32944356 -249249308 - L2 LINE L2 -82 3231 3154 2965 158 30 4 chr1 32944469 32944943 -249248721 + MER66B LTR ERV1 1 486 0 293 246 0 0 chr1 32944965 32945030 -249248634 + MER66B-int LTR ERV1 85 149 -6527 * 9168 244 68 67 chr1 32945028 32948845 -249244819 + MER66B-int LTR ERV1 53 3874 -2802 7981 17 0 0 chr1 32948845 32949840 -249243824 + L1PA3 LINE L1 5159 6153 -2 27 0 0 0 chr1 32949840 32949867 -249243797 + AT_rich Low_complexity Low_complexity 1 27 0 197 33 33 0 chr1 32950058 32950088 -249243576 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2700 132 20 52 chr1 32950089 32950629 -249243035 + MER66B-int LTR ERV1 3879 4401 -2275 259 209 0 45 chr1 32950629 32950696 -249242968 - MER4D LTR ERV1 -805 67 4 872 288 8 4 chr1 32950701 32950944 -249242720 - LOR1-int LTR ERV1 -1022 7098 6855 204 250 19 0 chr1 32951043 32951095 -249242569 + L2 LINE L2 3219 3271 -1 204 118 29 0 chr1 32954230 32954264 -249239400 + GA-rich Low_complexity Low_complexity 4 38 0 406 282 9 0 chr1 32955115 32955225 -249238439 + MIR3 SINE MIR 48 158 -50 526 263 103 0 chr1 32955718 32955874 -249237790 - MIR SINE MIR -10 252 81 198 292 169 26 chr1 32955881 32955910 -249237754 + L2 LINE L2 3097 3121 -151 1781 280 61 23 chr1 32955910 32956481 -249237183 + MLT1E LTR MaLR 1 593 0 198 292 169 26 chr1 32956481 32956605 -249237059 + L2 LINE L2 3121 3272 0 309 51 0 0 chr1 32956792 32956831 -249236833 + (CA)n Simple_repeat Simple_repeat 1 39 0 268 281 39 39 chr1 32957027 32957155 -249236509 + MIR SINE MIR 4 131 -77 182 148 0 0 chr1 32957215 32957242 -249236422 + L2 LINE L2 3226 3252 -20 331 278 38 30 chr1 32957785 32957918 -249235746 - MIR SINE MIR -109 153 20 359 198 26 52 chr1 32958357 32958473 -249235191 - MIR SINE MIR -77 131 19 288 258 96 34 chr1 32959093 32959277 -249234387 - MIR SINE MIR -56 152 3 281 209 26 87 chr1 32959747 32959862 -249233802 + L2 LINE L2 2905 3012 -260 408 209 55 36 chr1 32959993 32960103 -249233561 - MIR SINE MIR -118 144 33 228 284 275 28 chr1 32960547 32960758 -249232906 + L3 LINE CR1 1313 1575 -2 234 256 22 56 chr1 32962111 32962201 -249231463 + L2 LINE L2 3185 3271 -42 296 174 0 14 chr1 32962267 32962336 -249231328 + (CA)n Simple_repeat Simple_repeat 1 68 0 446 287 151 23 chr1 32962828 32963093 -249230571 - L2 LINE L2 -5 3308 3010 284 179 39 51 chr1 32963120 32963198 -249230466 - MIR SINE MIR -68 140 64 232 331 155 11 chr1 32963246 32963427 -249230237 - MIR SINE MIR -46 216 10 191 300 67 11 chr1 32963933 32964023 -249229641 + MIR SINE MIR 95 189 -73 282 167 0 37 chr1 32964160 32964214 -249229450 - L2 LINE L2 0 3272 3221 237 327 64 0 chr1 32964527 32964637 -249229027 - MER5A DNA MER1_type -26 163 47 211 297 97 16 chr1 32964870 32965055 -249228609 - MIR SINE MIR -35 227 28 365 301 45 45 chr1 32965326 32965592 -249228072 + LTR40b LTR ERVL 136 401 -61 285 243 49 57 chr1 32966060 32966258 -249227406 - MIR SINE MIR -7 201 6 226 317 219 0 chr1 32966340 32966463 -249227201 + MIR SINE MIR 107 256 -6 22 0 0 0 chr1 32966957 32966979 -249226685 + AT_rich Low_complexity Low_complexity 1 22 0 781 220 132 32 chr1 32967323 32967695 -249225969 - LTR16A1 LTR ERVL -5 452 44 272 237 113 21 chr1 32967900 32967997 -249225667 + MLT1K LTR MaLR 141 246 -342 438 282 37 60 chr1 32969292 32969508 -249224156 - MIR SINE MIR 0 262 52 683 211 78 0 chr1 32969525 32969691 -249223973 - MIR SINE MIR -6 256 78 214 319 50 34 chr1 32969900 32970019 -249223645 + MIR3 SINE MIR 8 128 -80 679 262 97 14 chr1 32970241 32970468 -249223196 - MIR SINE MIR -13 249 3 208 259 35 0 chr1 32971035 32971118 -249222546 + MIR SINE MIR 104 148 -60 512 246 78 39 chr1 32971603 32971830 -249221834 - MIR SINE MIR -19 243 3 351 335 164 17 chr1 32971904 32972372 -249221292 - L3 LINE CR1 -509 1068 532 202 281 0 55 chr1 32972380 32972508 -249221156 + (TCTCTG)n Simple_repeat Simple_repeat 3 123 0 * 286 306 0 20 chr1 32972430 32972528 -249221136 + CT-rich Low_complexity Low_complexity 1 96 0 377 305 119 11 chr1 32972749 32972926 -249220738 + MIR SINE MIR 32 227 -35 2232 135 0 0 chr1 32973273 32973577 -249220087 - AluSx SINE Alu -8 304 1 1038 279 87 45 chr1 32973596 32974300 -249219364 + L1ME LINE L1 5035 5768 -396 528 67 33 0 chr1 32974843 32974933 -249218731 + (CA)n Simple_repeat Simple_repeat 1 93 0 264 210 32 0 chr1 32975802 32975864 -249217800 + MIR SINE MIR 81 144 -64 382 268 54 9 chr1 32976021 32976133 -249217531 + MIR SINE MIR 20 136 -72 245 278 49 88 chr1 32977004 32977209 -249216455 + L3 LINE CR1 676 872 -705 204 261 0 0 chr1 32977368 32977414 -249216250 + (TAA)n Simple_repeat Simple_repeat 1 46 0 187 161 125 18 chr1 32977422 32977478 -249216186 - MER5C DNA MER1_type -190 134 73 * 404 295 211 5 chr1 32977445 32977635 -249216029 - MIR SINE MIR -14 248 20 335 363 88 0 chr1 32977656 32977838 -249215826 + L3 LINE CR1 982 1179 -398 1000 305 79 11 chr1 32977839 32978206 -249215458 - L2 LINE L2 0 3313 2922 1074 156 3 1 chr1 32978212 32978813 -249214851 + (ATG)n Simple_repeat Simple_repeat 1 782 0 667 293 86 32 chr1 32978829 32979177 -249214487 - L2 LINE L2 -400 2914 2548 525 282 199 40 chr1 32979140 32979441 -249214223 + L3 LINE CR1 1118 1466 -111 * 491 302 107 40 chr1 32979468 32979693 -249213971 + MIR SINE MIR 22 261 -1 447 163 0 0 chr1 32979694 32979774 -249213890 + (ATG)n Simple_repeat Simple_repeat 2 81 0 305 281 73 0 chr1 32979776 32979858 -249213806 - MER31A-int LTR ERV1 -4834 102 15 2676 135 74 15 chr1 32979907 32980365 -249213299 - MER31A LTR ERV1 0 485 1 486 273 119 65 chr1 32980804 32981281 -249212383 - MLT1J LTR MaLR 0 511 9 659 289 71 10 chr1 32981448 32981917 -249211747 - L1ME4a LINE L1 -23 6098 5567 1457 272 81 7 chr1 32982874 32983454 -249210210 - L1ME2 LINE L1 -78 6881 6259 1784 226 79 96 chr1 32983473 32984192 -249209472 - L1ME2 LINE L1 -743 6198 5503 2155 125 0 29 chr1 32984192 32984505 -249209159 - AluSq SINE Alu -9 304 1 1784 226 79 96 chr1 32984505 32984864 -249208800 - L1ME2 LINE L1 -1438 5503 5139 2286 101 0 10 chr1 32984864 32985162 -249208502 + AluSx SINE Alu 1 295 -17 1681 195 9 29 chr1 32985170 32985346 -249208318 - MER58B DNA MER1_type -2079 341 174 3255 128 30 0 chr1 32985346 32985838 -249207826 + MER84 LTR ERV1 1 507 0 1681 195 9 29 chr1 32985838 32986009 -249207655 - MER58B DNA MER1_type -2246 174 1 4572 69 6 71 chr1 32986037 32986687 -249206977 + SVA Other Other 779 1386 0 2338 261 67 36 chr1 32986765 32987215 -249206449 - L1ME2 LINE L1 -1868 5073 4639 7155 169 23 10 chr1 32987215 32989346 -249204318 - L1PA14 LINE L1 0 6161 4013 2338 261 67 36 chr1 32989346 32989817 -249203847 - L1ME2 LINE L1 -2302 4639 4123 1090 224 59 105 chr1 32989871 32990263 -249203401 - MLT1A2 LTR MaLR 0 374 1 1058 259 154 61 chr1 32990278 32991619 -249202045 - L1ME2 LINE L1 -3875 3247 1783 2643 169 52 14 chr1 32991637 32992192 -249201472 - L1MC3 LINE L1 -21 7764 7189 323 278 11 0 chr1 32992192 32992282 -249201382 - MLT1F1 LTR MaLR -442 125 35 817 121 46 12 chr1 32992282 32992455 -249201209 - L1MC3 LINE L1 -688 7097 6919 462 277 38 16 chr1 32992435 32992625 -249201039 - L1ME2 LINE L1 -4959 1464 1442 * 2310 113 0 3 chr1 32992625 32992925 -249200739 - AluSq SINE Alu -14 299 1 462 277 38 16 chr1 32992925 32993066 -249200598 - L1ME2 LINE L1 -4981 1442 1306 623 308 106 39 chr1 32993214 32993649 -249200015 - L1ME2 LINE L1 -5543 1388 925 927 188 80 148 chr1 32993693 32994018 -249199646 - AluJb SINE Alu -3 309 7 211 220 85 17 chr1 32994431 32994490 -249199174 + L2 LINE L2 3154 3216 -56 1126 285 61 26 chr1 32994524 32994952 -249198712 - L2 LINE L2 0 3313 2871 1332 246 139 19 chr1 32994995 32995359 -249198305 - L2 LINE L2 -1195 2119 1681 2226 129 3 0 chr1 32995359 32995662 -249198002 - AluSx SINE Alu -8 304 1 1332 246 139 19 chr1 32995662 32995780 -249197884 - L2 LINE L2 -1633 1681 1579 749 313 68 15 chr1 32995796 32996122 -249197542 + MLT1K LTR MaLR 47 389 -199 383 257 167 48 chr1 32996178 32996388 -249197276 + L2 LINE L2 3079 3313 0 485 259 184 13 chr1 32997057 32997296 -249196368 - L1ME4a LINE L1 -268 5853 5574 243 170 0 0 chr1 32997449 32997496 -249196168 + (TG)n Simple_repeat Simple_repeat 2 48 0 254 226 65 0 chr1 32997545 32997607 -249196057 - MIR SINE MIR -96 166 101 185 167 0 28 chr1 32997628 32997664 -249196000 + MIR SINE MIR 40 74 -188 238 346 23 23 chr1 32998904 32999034 -249194630 - MIR SINE MIR -16 246 117 376 260 52 0 chr1 32999527 32999623 -249194041 - MIR SINE MIR -62 146 46 307 265 68 76 chr1 33000442 33000574 -249193090 - MIR3 SINE MIR -52 156 26 195 276 186 30 chr1 33001780 33002044 -249191620 + L2 LINE L2 2564 2868 -446 711 246 41 27 chr1 33002155 33002375 -249191289 - MIR SINE MIR 0 262 40 227 321 73 0 chr1 33002508 33002617 -249191047 + L2 LINE L2 3150 3266 -6 255 362 52 0 chr1 33002905 33003021 -249190643 - L2 LINE L2 -34 3238 3117 485 278 99 0 chr1 33003080 33003242 -249190422 + MIR SINE MIR 75 252 -10 781 192 23 25 chr1 33003265 33003575 -249190089 - MLT1B LTR MaLR -17 373 2 786 254 42 65 chr1 33003575 33004055 -249189609 + L1ME3 LINE L1 5641 6109 -53 608 263 109 46 chr1 33004258 33004562 -249189102 - MLT1H LTR MaLR -226 323 1 2122 122 0 3 chr1 33004959 33005246 -249188418 + AluSc SINE Alu 1 286 -23 824 99 23 0 chr1 33005246 33005377 -249188287 + (GGGAA)n Simple_repeat Simple_repeat 1 134 0 854 211 66 18 chr1 33005572 33005800 -249187864 + MIR SINE MIR 24 262 0 233 92 92 0 chr1 33006024 33006089 -249187575 + A-rich Low_complexity Low_complexity 5 75 0 866 267 126 39 chr1 33006482 33006920 -249186744 - MLT1K LTR MaLR -12 576 101 189 279 0 0 chr1 33007032 33007075 -249186589 + L2 LINE L2 3005 3047 -266 670 242 137 48 chr1 33007127 33007354 -249186310 - MIR SINE MIR -4 258 12 189 211 0 0 chr1 33007395 33007447 -249186217 + (CA)n Simple_repeat Simple_repeat 1 52 0 246 335 11 28 chr1 33007473 33007649 -249186015 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 * 473 291 0 12 chr1 33007556 33007721 -249185943 + (CA)n Simple_repeat Simple_repeat 1 163 0 447 354 0 0 chr1 33007821 33008055 -249185609 + (CA)n Simple_repeat Simple_repeat 1 234 0 375 113 0 0 chr1 33008055 33008108 -249185556 + FRAM SINE Alu 65 117 -49 216 303 0 0 chr1 33008108 33008174 -249185490 + (CA)n Simple_repeat Simple_repeat 1 66 0 212 315 46 28 chr1 33008175 33008283 -249185381 + L2 LINE L2 3158 3267 -46 785 294 4 17 chr1 33009071 33009309 -249184355 - MIR SINE MIR 0 262 28 796 239 26 26 chr1 33009425 33009659 -249184005 - MIR SINE MIR -14 248 15 1280 186 147 55 chr1 33009695 33009752 -249183912 - MLT1D LTR MaLR -3 502 452 1737 173 7 14 chr1 33009752 33010047 -249183617 + AluJo SINE Alu 1 293 -19 1947 127 62 0 chr1 33010049 33010325 -249183339 + AluSx SINE Alu 1 293 -19 1280 186 147 55 chr1 33010325 33010721 -249182943 - MLT1D LTR MaLR -53 452 4 375 284 40 25 chr1 33010728 33010887 -249182777 - MIR SINE MIR -3 259 99 503 250 45 48 chr1 33011627 33011876 -249181788 - MIR3 SINE MIR -9 253 3 483 183 42 25 chr1 33012566 33012686 -249180978 + MIR SINE MIR 25 146 -62 346 252 47 19 chr1 33013080 33013187 -249180477 + MIR SINE MIR 60 169 -93 193 290 20 40 chr1 33013235 33013335 -249180329 - L2 LINE L2 -16 3256 3159 215 265 0 0 chr1 33013426 33013475 -249180189 - MIR SINE MIR -104 104 56 395 316 136 31 chr1 33016004 33016298 -249177366 + L2 LINE L2 2989 3313 0 193 256 144 22 chr1 33016606 33016696 -249176968 + MIR SINE MIR 47 147 -115 194 188 0 0 chr1 33017405 33017453 -249176211 + MIR SINE MIR 93 140 -68 181 365 16 0 chr1 33017651 33017714 -249175950 - L2 LINE L2 -7 3306 3243 191 258 30 15 chr1 33018152 33018218 -249175446 - MIR SINE MIR -115 147 81 636 271 29 0 chr1 33018284 33018454 -249175210 - MIR SINE MIR 0 262 88 273 356 8 53 chr1 33018536 33018668 -249174996 + L2 LINE L2 3134 3259 -13 261 268 79 10 chr1 33019041 33019193 -249174471 - MIR SINE MIR -36 226 61 1182 273 79 54 chr1 33019234 33019796 -249173868 - LTR41 LTR ERVL 0 795 215 335 325 35 0 chr1 33019815 33019965 -249173699 - LTR41 LTR ERVL -439 334 215 1147 209 70 20 chr1 33020068 33020369 -249173295 - LTR41 LTR ERVL -456 317 2 6054 281 60 33 chr1 33020734 33022955 -249170709 - ERVL LTR ERVL -394 5370 3090 552 314 21 0 chr1 33022958 33023146 -249170518 - ERVL LTR ERVL -2866 2898 2707 353 323 60 38 chr1 33023339 33023655 -249170009 - L2 LINE L2 0 3313 2991 232 292 14 0 chr1 33023675 33023747 -249169917 - MER94 DNA DNA -58 76 4 225 358 12 0 chr1 33023757 33023838 -249169826 + MIR SINE MIR 181 262 0 197 336 37 9 chr1 33024516 33024623 -249169041 - MIR SINE MIR -69 193 84 322 313 45 0 chr1 33024778 33024912 -249168752 + MER5A DNA MER1_type 50 189 0 476 252 98 0 chr1 33025662 33025805 -249167859 - MIR SINE MIR 0 262 106 472 268 11 55 chr1 33027849 33028032 -249165632 - MER117 DNA MER1_type -16 181 7 400 313 119 15 chr1 33028074 33028275 -249165389 + MIR SINE MIR 34 255 -7 191 294 29 0 chr1 33028360 33028428 -249165236 + MIR SINE MIR 49 118 -90 404 346 20 7 chr1 33028892 33029045 -249164619 + L3 LINE CR1 1281 1435 -142 200 275 29 14 chr1 33029800 33029869 -249163795 + L2 LINE L2 3193 3262 -10 738 316 8 23 chr1 33030214 33030470 -249163194 - MIR SINE MIR -8 254 3 4167 234 61 34 chr1 33030757 33033639 -249160025 + L1MDa LINE L1 1044 4002 -2538 2849 264 64 26 chr1 33033619 33034681 -249158983 + L1MDa LINE L1 4376 5485 -1055 * 2211 125 0 0 chr1 33034681 33034984 -249158680 - AluSx SINE Alu -9 303 1 2849 264 64 26 chr1 33034984 33035064 -249158600 + L1MDa LINE L1 5485 5561 -979 309 301 32 0 chr1 33035346 33035439 -249158225 - L2 LINE L2 0 3313 3218 358 272 20 16 chr1 33035473 33035626 -249158038 - MLT1J2 LTR MaLR -191 218 67 344 164 14 55 chr1 33036318 33036391 -249157273 + AluJ/FRAM SINE Alu 230 299 -3 488 246 22 22 chr1 33036404 33036542 -249157122 + L1M4 LINE L1 4643 4780 -1366 1741 202 63 14 chr1 33036547 33036973 -249156691 + MLT1C LTR MaLR 21 467 0 237 252 70 26 chr1 33036977 33037092 -249156572 - MIR SINE MIR -110 152 33 277 297 89 0 chr1 33037476 33037577 -249156087 - L2 LINE L2 -6 3266 3157 270 273 87 75 chr1 33037630 33037883 -249155781 - L2 LINE L2 -347 2967 2712 287 269 0 60 chr1 33037963 33038145 -249155519 + (GGGTG)n Simple_repeat Simple_repeat 1 171 0 254 288 76 83 chr1 33038912 33039176 -249154488 + L2 LINE L2 2995 3256 -16 603 294 60 9 chr1 33039281 33039499 -249154165 + MIR SINE MIR 22 250 -12 315 307 36 36 chr1 33039513 33039653 -249154011 + MLT1K LTR MaLR 38 177 -411 833 275 83 4 chr1 33039707 33039947 -249153717 + MLT1K LTR MaLR 330 588 0 192 292 14 14 chr1 33039979 33040051 -249153613 - MIR SINE MIR -157 105 34 191 284 59 49 chr1 33040720 33040822 -249152842 + L2 LINE L2 3209 3311 -2 187 341 57 0 chr1 33040981 33041069 -249152595 - MIR3 SINE MIR -107 101 9 2355 130 28 3 chr1 33041236 33041591 -249152073 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 33041606 33041700 -249151964 + CT-rich Low_complexity Low_complexity 1 94 0 432 0 0 0 chr1 33042559 33042607 -249151057 + (TG)n Simple_repeat Simple_repeat 2 49 0 497 209 83 28 chr1 33042667 33042833 -249150831 - MIR SINE MIR -65 143 23 543 254 23 0 chr1 33043223 33043353 -249150311 - MER94 DNA DNA -1 133 1 245 299 65 0 chr1 33045558 33045635 -249148029 - MIR SINE MIR -70 192 111 260 154 19 0 chr1 33045645 33045697 -249147967 - MIR SINE MIR -130 132 80 214 175 88 18 chr1 33045927 33045984 -249147680 - MIR SINE MIR -147 115 55 342 0 0 0 chr1 33046483 33046521 -249147143 + (CA)n Simple_repeat Simple_repeat 2 39 0 521 270 56 61 chr1 33048195 33048232 -249145432 + MIR SINE MIR 64 100 -162 2651 50 0 0 chr1 33048232 33048529 -249145135 - AluY SINE Alu -14 297 1 521 270 56 61 chr1 33048529 33048687 -249144977 + MIR SINE MIR 100 258 -4 188 279 33 0 chr1 33049697 33049758 -249143906 - MIR SINE MIR -98 110 48 307 350 14 7 chr1 33050387 33050527 -249143137 + MIR SINE MIR 2 142 -120 1328 240 105 14 chr1 33050727 33051090 -249142574 - MSTD LTR MaLR 0 396 1 405 295 9 0 chr1 33051884 33051996 -249141668 + MER81 DNA DNA 1 113 -1 341 306 30 0 chr1 33053479 33053613 -249140051 - MIR3 SINE MIR -56 152 15 196 328 25 25 chr1 33054554 33054673 -249138991 - MIR3 SINE MIR -77 131 13 209 274 39 29 chr1 33055407 33055509 -249138155 + MIR SINE MIR 31 133 -129 271 333 59 0 chr1 33055530 33055665 -249137999 + MIR SINE MIR 87 229 -33 326 287 85 0 chr1 33056068 33056197 -249137467 + MIR3 SINE MIR 55 194 -14 610 260 68 11 chr1 33056267 33056474 -249137190 - MIR SINE MIR -11 251 35 524 250 64 0 chr1 33056601 33056741 -249136923 - MIR SINE MIR -78 184 36 708 224 87 40 chr1 33057121 33057443 -249136221 + L2 LINE L2 2622 2958 -356 325 241 62 62 chr1 33058249 33058361 -249135303 - L2 LINE L2 -1 3312 3201 304 283 10 10 chr1 33058972 33059071 -249134593 + MIR SINE MIR 29 127 -81 460 265 165 29 chr1 33060125 33060295 -249133369 - MIR SINE MIR -55 207 15 295 273 80 0 chr1 33060654 33060742 -249132922 + MIR SINE MIR 49 143 -119 287 300 64 36 chr1 33061175 33061315 -249132349 - MIR3 SINE MIR -23 185 42 297 308 43 8 chr1 33061363 33061480 -249132184 - MIR SINE MIR -1 261 141 380 285 60 26 chr1 33061596 33061747 -249131917 - MIR SINE MIR -33 229 74 814 267 32 16 chr1 33061749 33061996 -249131668 - MIR SINE MIR -4 258 8 318 209 30 15 chr1 33062005 33062072 -249131592 - MIR SINE MIR -174 88 21 392 264 19 88 chr1 33062298 33062357 -249131307 + MER5A DNA MER1_type 16 78 -111 2177 95 0 14 chr1 33062357 33062664 -249131000 + AluSg SINE Alu 1 303 0 392 264 19 88 chr1 33062664 33062762 -249130902 + MER5A DNA MER1_type 78 163 -26 1943 147 57 34 chr1 33062784 33063138 -249130526 + THE1B LTR MaLR 3 364 0 330 236 228 8 chr1 33063281 33063408 -249130256 - MIR SINE MIR -75 187 33 443 279 75 12 chr1 33064023 33064083 -249129581 + MIR SINE MIR 85 140 -122 2269 91 0 3 chr1 33064083 33064379 -249129285 + AluSg SINE Alu 1 295 -15 443 279 75 12 chr1 33064379 33064479 -249129185 + MIR SINE MIR 140 255 -7 186 222 0 0 chr1 33064588 33064642 -249129022 + (TG)n Simple_repeat Simple_repeat 1 54 0 2453 155 165 47 chr1 33064685 33064936 -249128728 - MER39 LTR ERV1 -54 653 433 1839 100 78 22 chr1 33064936 33065207 -249128457 + AluSx SINE Alu 1 286 -26 186 43 0 0 chr1 33065207 33065230 -249128434 + (GA)n Simple_repeat Simple_repeat 2 24 0 2453 155 165 47 chr1 33065230 33065558 -249128106 - MER39 LTR ERV1 -273 434 4 714 267 62 4 chr1 33066535 33066802 -249126862 + L1M4 LINE L1 3576 3846 -2300 14966 175 26 17 chr1 33066813 33073215 -249120449 + L1MA4 LINE L1 14 6475 -7 204 40 0 0 chr1 33073215 33073240 -249120424 + (TG)n Simple_repeat Simple_repeat 2 26 0 1285 159 54 14 chr1 33073240 33073516 -249120148 + L1MC3 LINE L1 7491 7777 -8 25 31 0 0 chr1 33073516 33073548 -249120116 + AT_rich Low_complexity Low_complexity 1 32 0 6300 194 25 5 chr1 33073569 33075358 -249118306 + L1M4 LINE L1 3840 5666 -518 405 0 0 0 chr1 33075527 33075572 -249118092 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 0 0 0 chr1 33075719 33075746 -249117918 + AT_rich Low_complexity Low_complexity 1 27 0 2668 102 3 0 chr1 33075882 33076236 -249117428 + THE1A LTR MaLR 1 355 0 11839 100 9 1 chr1 33076236 33077803 -249115861 + THE1A-int LTR MaLR 1 1580 0 1829 72 4 0 chr1 33077803 33078040 -249115624 + THE1A LTR MaLR 1 238 -117 973 42 0 0 chr1 33078041 33078160 -249115504 + L1PA2 LINE L1 3 121 -6025 38357 30 22 1 chr1 33078160 33083830 -249109834 + L1PA2 LINE L1 399 6190 0 1024 75 0 0 chr1 33083832 33083965 -249109699 + THE1A LTR MaLR 223 355 0 2139 199 38 16 chr1 33084408 33084856 -249108808 - MER70A LTR ERVL -14 458 1 398 309 18 0 chr1 33084923 33085033 -249108631 - MIR SINE MIR -90 172 61 237 217 17 17 chr1 33085528 33085588 -249108076 - MIR SINE MIR -116 92 33 357 175 12 62 chr1 33085849 33085929 -249107735 + MIR SINE MIR 68 143 -65 217 344 74 8 chr1 33086591 33086713 -249106951 - L2 LINE L2 -6 3266 3137 487 260 44 31 chr1 33086799 33087026 -249106638 - LTR16C LTR ERVL 0 491 262 30 0 0 0 chr1 33087254 33087284 -249106380 + AT_rich Low_complexity Low_complexity 1 30 0 379 277 39 67 chr1 33087861 33088059 -249105605 + MIR3 SINE MIR 6 196 -66 223 164 109 0 chr1 33088136 33088191 -249105473 + MIR3 SINE MIR 105 165 -43 322 305 113 7 chr1 33089006 33089157 -249104507 + MIR SINE MIR 22 188 -74 326 311 86 7 chr1 33089347 33089498 -249104166 - MIR3 SINE MIR -19 189 27 318 222 0 16 chr1 33089524 33089587 -249104077 + MIR SINE MIR 14 75 -187 * 510 270 63 83 chr1 33089586 33090142 -249103522 - L2 LINE L2 -1 3271 2676 623 233 50 28 chr1 33090150 33090330 -249103334 + MIR SINE MIR 73 256 -6 537 356 26 17 chr1 33090988 33091218 -249102446 + MIR SINE MIR 8 239 -23 190 318 45 23 chr1 33091604 33091692 -249101972 - L2 LINE L2 -42 3271 3182 197 276 293 0 chr1 33091773 33091896 -249101768 + L2 LINE L2 1758 1916 -1398 1442 273 202 3 chr1 33092117 33092751 -249100913 + L2 LINE L2 1862 2621 -693 350 292 79 17 chr1 33092761 33092939 -249100725 - MLT1J LTR MaLR -322 189 1 347 296 67 41 chr1 33092977 33093254 -249100410 - L2 LINE L2 -284 3029 2736 40656 57 2 1 chr1 33093254 33099387 -249094277 - L1PA5 LINE L1 0 6154 13 213 301 175 18 chr1 33099436 33099665 -249093999 - L2 LINE L2 -656 2658 2394 1636 243 141 8 chr1 33100070 33100588 -249093076 + MLT1G1 LTR MaLR 1 587 -8 270 311 66 0 chr1 33100836 33100942 -249092722 + L2 LINE L2 3160 3272 0 297 0 0 0 chr1 33101618 33101651 -249092013 + (TG)n Simple_repeat Simple_repeat 2 34 0 266 292 87 25 chr1 33102288 33102449 -249091215 + MIR SINE MIR 13 183 -79 373 319 15 15 chr1 33103375 33103510 -249090154 + MIR3 SINE MIR 20 154 -54 196 279 139 0 chr1 33103631 33103717 -249089947 + MIR SINE MIR 59 156 -106 315 104 0 0 chr1 33103799 33103847 -249089817 + (ATG)n Simple_repeat Simple_repeat 3 50 0 777 194 0 0 chr1 33103888 33104068 -249089596 + (ATG)n Simple_repeat Simple_repeat 1 180 0 667 182 6 17 chr1 33104078 33104259 -249089405 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 343 314 0 0 chr1 33104262 33104364 -249089300 + (ATG)n Simple_repeat Simple_repeat 1 102 0 2304 89 6 6 chr1 33104364 33104708 -249088956 + AluSp SINE Alu 1 402 0 372 103 0 0 chr1 33104708 33104766 -249088898 + (ATG)n Simple_repeat Simple_repeat 1 58 0 462 254 32 12 chr1 33104822 33104957 -249088707 - MIR3 SINE MIR -22 186 48 354 295 72 7 chr1 33105298 33105437 -249088227 - MIR3 SINE MIR -53 155 8 23 54 0 0 chr1 33105580 33105617 -249088047 + AT_rich Low_complexity Low_complexity 1 37 0 906 290 63 44 chr1 33105756 33106229 -249087435 + LTR33 LTR ERVL 39 520 -1 252 286 14 0 chr1 33106346 33106416 -249087248 + MIR SINE MIR 184 254 -8 471 272 55 41 chr1 33106690 33106872 -249086792 - MIR SINE MIR -61 147 3 2565 116 5 24 chr1 33107220 33107591 -249086073 + THE1B LTR MaLR 1 364 0 399 242 6 91 chr1 33108491 33108656 -249085008 + L2 LINE L2 3163 3313 0 196 29 0 57 chr1 33109117 33109152 -249084512 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 811 121 0 0 chr1 33109153 33109269 -249084395 - AluSq/x SINE Alu -197 116 1 336 177 2 0 chr1 33109641 33109711 -249083953 + MIR SINE MIR 74 145 -63 2369 77 0 3 chr1 33110446 33110757 -249082907 + AluY SINE Alu 1 310 -1 264 246 0 29 chr1 33110775 33110844 -249082820 - MLT1K LTR MaLR -111 477 411 314 275 42 49 chr1 33111012 33111154 -249082510 - MLT1K LTR MaLR -247 341 201 201 277 106 32 chr1 33111398 33111492 -249082172 - MIR SINE MIR -108 154 54 347 256 12 0 chr1 33111995 33112081 -249081583 - MIR SINE MIR -57 151 65 191 241 277 21 chr1 33112109 33112250 -249081414 - MIR SINE MIR -34 228 52 252 346 92 20 chr1 33113240 33113393 -249080271 + ERVL LTR ERVL 513 676 -5088 1686 331 64 74 chr1 33113450 33115061 -249078603 + ERVL LTR ERVL 2322 3916 -1738 432 258 115 33 chr1 33115243 33115425 -249078239 - MIR SINE MIR -56 206 10 220 256 154 0 chr1 33115611 33115689 -249077975 - MIR SINE MIR -112 150 61 272 316 156 9 chr1 33115916 33116128 -249077536 + L2 LINE L2 2947 3189 -124 500 298 84 1 chr1 33116131 33116417 -249077247 - LTR16C LTR ERVL -2 489 154 187 204 0 41 chr1 33116714 33116763 -249076901 + MIR3 SINE MIR 133 179 -29 850 157 0 16 chr1 33117036 33117279 -249076385 + (TG)n Simple_repeat Simple_repeat 1 239 0 283 288 76 83 chr1 33118407 33118671 -249074993 + L2 LINE L2 2995 3256 -16 609 295 60 9 chr1 33118777 33118994 -249074670 + MIR SINE MIR 23 250 -12 329 329 29 29 chr1 33119008 33119148 -249074516 + MLT1K LTR MaLR 38 177 -411 854 275 83 4 chr1 33119202 33119442 -249074222 + MLT1K LTR MaLR 330 588 0 200 292 14 14 chr1 33119474 33119546 -249074118 - MIR SINE MIR -157 105 34 198 284 59 49 chr1 33120215 33120317 -249073347 + L2 LINE L2 3209 3311 -2 180 341 57 0 chr1 33120476 33120564 -249073100 - MIR3 SINE MIR -107 101 9 2386 130 28 3 chr1 33120731 33121086 -249072578 - THE1B LTR MaLR 0 364 1 495 160 0 0 chr1 33121101 33121195 -249072469 + CT-rich Low_complexity Low_complexity 1 94 0 270 0 0 0 chr1 33122054 33122084 -249071580 + (TG)n Simple_repeat Simple_repeat 2 31 0 469 210 88 27 chr1 33122146 33122309 -249071355 - MIR SINE MIR -65 143 23 581 246 23 0 chr1 33122699 33122829 -249070835 - MER94 DNA DNA -1 133 1 267 298 24 0 chr1 33124847 33124931 -249068733 - MIR SINE MIR -67 141 56 2416 156 7 30 chr1 33125385 33125790 -249067874 + MSTD LTR MaLR 1 396 0 351 158 16 0 chr1 33125791 33125859 -249067805 - MIR SINE MIR -61 147 79 278 283 97 3 chr1 33126068 33126187 -249067477 + MIR SINE MIR 35 154 -56 352 267 56 0 chr1 33126593 33126683 -249066981 - MIR SINE MIR -70 192 98 245 116 0 0 chr1 33130186 33130229 -249063435 + L2 LINE L2 3271 3313 0 331 282 18 36 chr1 33130252 33130362 -249063302 - MIR SINE MIR -75 187 80 211 243 72 0 chr1 33130589 33130669 -249062995 - MIR SINE MIR -89 119 34 252 0 0 0 chr1 33131148 33131176 -249062488 + (CA)n Simple_repeat Simple_repeat 2 29 0 508 276 56 61 chr1 33132850 33132887 -249060777 + MIR SINE MIR 64 100 -162 2514 50 0 0 chr1 33132887 33133184 -249060480 - AluY SINE Alu -14 297 1 508 276 56 61 chr1 33133184 33133342 -249060322 + MIR SINE MIR 100 258 -4 180 279 33 0 chr1 33134352 33134413 -249059251 - MIR SINE MIR -98 110 48 324 371 7 0 chr1 33135042 33135182 -249058482 + MIR SINE MIR 2 142 -120 1397 251 99 8 chr1 33135382 33135745 -249057919 - MSTD LTR MaLR 0 396 1 423 295 9 0 chr1 33136539 33136651 -249057013 + MER81 DNA DNA 1 113 -1 344 313 30 0 chr1 33138134 33138268 -249055396 - MIR3 SINE MIR -56 152 15 1719 61 0 0 chr1 33139010 33139238 -249054426 - L1P LINE L1 -1400 4746 4519 * 4496 20 0 0 chr1 33139237 33139782 -249053882 + L1P LINE L1 3952 4496 -1650 189 0 0 0 chr1 33140990 33141011 -249052653 + (TG)n Simple_repeat Simple_repeat 2 22 0 1479 194 39 0 chr1 33141012 33141291 -249052373 - AluJo SINE Alu -22 290 1 2839 91 6 0 chr1 33141536 33141897 -249051767 - THE1B LTR MaLR 0 364 2 563 298 48 0 chr1 33142293 33142481 -249051183 + MIR SINE MIR 46 242 -20 515 306 72 10 chr1 33142638 33142847 -249050817 - MIR SINE MIR -10 252 31 257 303 169 18 chr1 33143029 33143193 -249050471 + MIR SINE MIR 58 245 -17 366 299 26 0 chr1 33143502 33143619 -249050045 - MIR SINE MIR -99 163 44 908 267 46 4 chr1 33143665 33143905 -249049759 - MIR SINE MIR -10 252 3 341 283 81 0 chr1 33143983 33144082 -249049582 + L2 LINE L2 3138 3244 -28 755 297 69 15 chr1 33144241 33144574 -249049090 - MLT1I LTR MaLR -56 353 3 286 200 89 67 chr1 33144708 33144798 -249048866 - MIR SINE MIR -80 128 37 237 224 17 17 chr1 33145054 33145112 -249048552 + GA-rich Low_complexity Low_complexity 1 58 0 238 179 0 0 chr1 33145201 33145240 -249048424 - MER5A DNA MER1_type -115 74 36 1364 176 8 12 chr1 33146908 33147164 -249046500 - MER65A LTR ERV1 -190 255 1 2477 223 30 13 chr1 33147164 33147788 -249045876 - MER65A-int LTR ERV1 0 4871 4237 7011 6 1 0 chr1 33147895 33148758 -249044906 - L1HS LINE L1 -89 6066 5203 594 225 60 74 chr1 33148768 33149010 -249044654 - MER65A-int LTR ERV1 -406 4530 3605 269 206 0 37 chr1 33149095 33149180 -249044484 - MER65A-int LTR ERV1 -728 5696 5458 2199 208 66 65 chr1 33149181 33150620 -249043044 - MER65A-int LTR ERV1 -1137 4021 2466 677 163 84 58 chr1 33150700 33150890 -249042774 - MER65A-int LTR ERV1 -2868 3730 3536 1208 184 88 101 chr1 33151157 33151762 -249041902 - MER65A-int LTR ERV1 -3105 3493 1989 777 196 50 14 chr1 33151743 33151963 -249041701 - MER65A-int LTR ERV1 -6377 1743 1516 * 4011 185 103 51 chr1 33152037 33152391 -249041273 - MER65A-int LTR ERV1 -2377 2494 2160 796 143 0 0 chr1 33152391 33152503 -249041161 + FLAM_C SINE Alu 5 116 -17 381 58 0 0 chr1 33152512 33152564 -249041100 + (CA)n Simple_repeat Simple_repeat 1 52 0 4011 185 103 51 chr1 33152564 33152903 -249040761 - MER65A-int LTR ERV1 -2718 2153 1833 237 65 0 0 chr1 33152903 33152934 -249040730 + (CA)n Simple_repeat Simple_repeat 2 32 0 4011 185 103 51 chr1 33152934 33153424 -249040240 - MER65A-int LTR ERV1 -3038 1833 1238 872 177 0 121 chr1 33153424 33153639 -249040025 - MER51C LTR ERV1 0 640 452 2713 224 50 30 chr1 33153949 33154644 -249039020 - MER65A-int LTR ERV1 -3640 1231 523 692 255 46 76 chr1 33154732 33155101 -249038563 - MER65A-int LTR ERV1 -4509 362 5 2318 168 20 9 chr1 33155101 33155541 -249038123 - MER65A LTR ERV1 0 445 1 3460 255 98 54 chr1 33155612 33156744 -249036920 - L1MEc LINE L1 -3059 3156 2076 3195 165 30 7 chr1 33156744 33157282 -249036382 + MER44D DNA MER2_type 1 605 0 3460 255 98 54 chr1 33157282 33158034 -249035630 - L1MEc LINE L1 -4139 2076 1359 2261 133 0 0 chr1 33158034 33158342 -249035322 - AluSx SINE Alu -2 310 3 3460 255 98 54 chr1 33158342 33158615 -249035049 - L1MEc LINE L1 -4856 1359 1100 2288 125 0 0 chr1 33158615 33158926 -249034738 - AluSq SINE Alu -2 311 1 3460 255 98 54 chr1 33158926 33159425 -249034239 - L1MEc LINE L1 -5115 1100 625 1958 97 78 0 chr1 33159425 33159694 -249033970 - AluSg SINE Alu -20 290 1 3460 255 98 54 chr1 33159694 33160066 -249033598 - L1MEc LINE L1 -5590 625 36 515 351 40 5 chr1 33160066 33160268 -249033396 + MIR SINE MIR 20 228 -34 769 238 6 12 chr1 33161806 33161974 -249031690 + MIR SINE MIR 38 204 -58 299 320 13 59 chr1 33162111 33162154 -249031510 + MIR3 SINE MIR 36 79 -129 2337 137 121 0 chr1 33162154 33162533 -249031131 + MSTC LTR MaLR 1 425 -3 299 320 13 59 chr1 33162533 33162642 -249031022 + MIR3 SINE MIR 79 181 -27 294 243 27 40 chr1 33162822 33162896 -249030768 - L2 LINE L2 0 3272 3200 590 299 54 46 chr1 33162914 33163282 -249030382 - L2 LINE L2 0 3313 2943 2587 133 150 7 chr1 33163286 33163442 -249030222 + L1P4 LINE L1 4745 4877 -1291 2014 145 129 21 chr1 33163442 33163828 -249029836 - MSTA LTR MaLR 0 428 1 2587 133 150 7 chr1 33163828 33164431 -249029233 + L1P4 LINE L1 4877 5641 -527 7132 182 78 37 chr1 33164431 33165960 -249027704 - MER52A LTR ERV1 0 1755 66 238 239 0 0 chr1 33166264 33166310 -249027354 - MER52C LTR ERV1 -1225 53 8 3782 82 2 22 chr1 33166315 33166849 -249026815 + L1PA14 LINE L1 5639 6161 0 929 252 68 0 chr1 33166948 33167182 -249026482 + MIR SINE MIR 13 262 0 271 256 22 56 chr1 33167683 33167773 -249025891 - MIR3 SINE MIR -31 177 91 308 213 25 38 chr1 33167930 33168090 -249025574 + (TTAA)n Simple_repeat Simple_repeat 2 159 0 22 35 0 0 chr1 33168093 33168122 -249025542 + AT_rich Low_complexity Low_complexity 1 29 0 213 149 45 15 chr1 33168131 33168198 -249025466 + (TTAA)n Simple_repeat Simple_repeat 3 71 0 1377 94 0 0 chr1 33168330 33169197 -249024467 + (CCA)n Simple_repeat Simple_repeat 1 867 0 298 244 372 6 chr1 33169197 33169369 -249024295 - MIR SINE MIR -15 247 13 233 339 62 48 chr1 33169533 33169679 -249023985 + MIR SINE MIR 20 165 -68 415 285 69 31 chr1 33170096 33170313 -249023351 - MIR SINE MIR -21 241 18 485 263 29 35 chr1 33170805 33170976 -249022688 + MIR SINE MIR 41 210 -52 593 257 167 9 chr1 33171155 33171377 -249022287 + MIR SINE MIR 6 262 0 494 189 81 9 chr1 33171398 33171509 -249022155 + L2 LINE L2 3195 3313 0 243 167 0 0 chr1 33171749 33171815 -249021849 + (CA)n Simple_repeat Simple_repeat 2 67 0 421 192 0 0 chr1 33172354 33172432 -249021232 + MER20 DNA MER1_type 7 84 -135 272 200 59 0 chr1 33172492 33172662 -249021002 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 459 219 67 0 chr1 33172673 33172837 -249020827 + (CAGG)n Simple_repeat Simple_repeat 1 175 0 424 209 68 0 chr1 33172872 33173020 -249020644 + (CAGG)n Simple_repeat Simple_repeat 3 160 0 432 254 18 18 chr1 33173036 33173150 -249020514 + MER20 DNA MER1_type 104 217 -2 392 292 10 0 chr1 33173158 33173254 -249020410 - MIR SINE MIR -75 133 37 224 214 60 0 chr1 33174480 33174648 -249019016 + (CAGG)n Simple_repeat Simple_repeat 3 180 0 216 381 60 0 chr1 33175264 33175348 -249018316 + MIR SINE MIR 5 93 -169 2024 109 26 40 chr1 33175348 33175696 -249017968 - MSTA LTR MaLR 0 428 86 1859 160 107 62 chr1 33175721 33176153 -249017511 + MER66B LTR ERV1 7 457 -29 406 143 65 0 chr1 33176138 33176215 -249017449 - MSTA LTR MaLR -344 82 1 * 414 241 147 0 chr1 33176669 33176785 -249016879 - MIR SINE MIR -115 147 15 1185 218 148 14 chr1 33177512 33177856 -249015808 + MSTD LTR MaLR 1 390 -6 408 291 231 20 chr1 33177933 33178132 -249015532 + MIR SINE MIR 22 262 0 181 289 84 104 chr1 33178219 33178468 -249015196 + L2 LINE L2 2818 3061 -211 562 278 145 39 chr1 33178476 33178883 -249014781 + L2 LINE L2 2850 3299 -14 275 214 26 26 chr1 33178896 33178947 -249014717 + GA-rich Low_complexity Low_complexity 4 54 -66 1552 163 0 19 chr1 33178947 33179205 -249014459 + AluJo SINE Alu 42 294 -18 2479 87 0 0 chr1 33179207 33179517 -249014147 + AluY SINE Alu 1 310 -1 275 214 26 26 chr1 33179517 33179579 -249014085 + GA-rich Low_complexity Low_complexity 54 120 0 243 189 0 19 chr1 33180290 33180343 -249013321 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 540 261 148 53 chr1 33180515 33180588 -249013076 - MLT1L LTR MaLR -31 584 519 1363 221 39 49 chr1 33180588 33180978 -249012686 + MER58D DNA MER1_type 1 386 0 540 261 148 53 chr1 33180978 33181283 -249012381 - MLT1L LTR MaLR -96 519 170 1363 221 39 49 chr1 33182323 33182713 -249010951 + MER58D DNA MER1_type 1 386 0 250 293 151 29 chr1 33182823 33183028 -249010636 - MLT1L LTR MaLR -216 399 170 360 274 105 16 chr1 33183275 33183399 -249010265 - MIR SINE MIR -20 242 108 206 259 52 44 chr1 33184060 33184195 -249009469 - L2 LINE L2 -289 2983 2848 184 139 56 0 chr1 33184783 33184819 -249008845 + MER5B DNA MER1_type 16 53 -125 * 264 305 42 34 chr1 33184790 33184908 -249008756 - MER5A DNA MER1_type -24 165 47 424 289 0 0 chr1 33185273 33185363 -249008301 - L2 LINE L2 -1 3312 3223 598 262 57 57 chr1 33185385 33185633 -249008031 - REP3 LTR ERV -47 515 268 416 258 39 0 chr1 33185639 33185767 -249007897 - REP3 LTR ERV -429 133 1 217 284 225 6 chr1 33186005 33186158 -249007506 - MIR SINE MIR -72 190 5 497 274 56 17 chr1 33186992 33187171 -249006493 + MIR SINE MIR 46 231 -31 520 258 80 18 chr1 33187316 33187479 -249006185 + MIR SINE MIR 20 192 -70 291 292 68 10 chr1 33187489 33187636 -249006028 + MIR SINE MIR 33 187 -21 530 248 105 66 chr1 33188135 33188500 -249005164 - MLT1I LTR MaLR -7 402 22 216 0 0 0 chr1 33188654 33188678 -249004986 + (T)n Simple_repeat Simple_repeat 1 24 0 825 149 8 0 chr1 33188869 33188990 -249004674 + FLAM_C SINE Alu 1 122 -21 498 287 194 35 chr1 33189467 33189865 -249003799 + L2 LINE L2 2789 3247 -25 477 231 4 15 chr1 33190673 33190954 -249002710 + (CA)n Simple_repeat Simple_repeat 1 277 0 414 212 0 22 chr1 33191013 33191197 -249002467 + (CA)n Simple_repeat Simple_repeat 1 180 0 268 256 6 6 chr1 33191253 33191421 -249002243 + (CA)n Simple_repeat Simple_repeat 1 168 0 864 261 25 25 chr1 33191936 33192177 -249001487 + MIR SINE MIR 4 244 -18 591 299 117 36 chr1 33192200 33192584 -249001080 + L2 LINE L2 2875 3289 -24 207 69 0 0 chr1 33192595 33192624 -249001040 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 367 306 76 7 chr1 33193983 33194127 -248999537 - L2 LINE L2 0 3313 3160 334 292 234 0 chr1 33194319 33194456 -248999208 - MIR SINE MIR -14 248 80 2244 132 22 20 chr1 33194538 33194895 -248998769 - THE1B LTR MaLR -6 358 1 308 329 106 0 chr1 33195013 33195174 -248998490 - MIR SINE MIR -50 212 35 260 320 31 10 chr1 33196173 33196270 -248997394 - MIR SINE MIR -84 124 26 640 200 62 7 chr1 33196299 33196452 -248997212 + MIR SINE MIR 99 261 -1 437 345 24 37 chr1 33196836 33197082 -248996582 + L2 LINE L2 2851 3093 -179 546 254 23 0 chr1 33197122 33197252 -248996412 - MIR SINE MIR -70 192 60 218 313 43 0 chr1 33197444 33197559 -248996105 + L2 LINE L2 2219 2338 -976 3637 151 36 2 chr1 33197815 33198398 -248995266 + LTR26 LTR ERV1 1 603 0 948 281 79 97 chr1 33198414 33198666 -248994998 + L1MEd LINE L1 242 497 -5622 1827 119 28 7 chr1 33198666 33198951 -248994713 - AluSg SINE Alu -19 291 1 948 281 79 97 chr1 33198951 33199209 -248994455 + L1MEd LINE L1 497 758 -5361 2069 127 0 0 chr1 33199209 33199508 -248994156 + AluSx SINE Alu 6 304 -8 948 281 79 97 chr1 33199508 33199912 -248993752 + L1MEd LINE L1 758 1140 -4979 1194 238 20 20 chr1 33199981 33200284 -248993380 + L1ME3A LINE L1 1 303 -5742 1206 286 71 34 chr1 33200296 33201040 -248992624 + L1ME3A LINE L1 2049 2820 -3925 1884 223 17 11 chr1 33201048 33201523 -248992141 + L1ME3A LINE L1 3037 3514 -3050 1420 225 102 29 chr1 33201522 33202016 -248991648 + L1ME3A LINE L1 6029 6580 -2 * 467 281 26 36 chr1 33202029 33202257 -248991407 + L1MEd LINE L1 1219 1629 -861 293 228 90 78 chr1 33202716 33202879 -248990785 + MIR SINE MIR 5 183 -58 383 278 116 24 chr1 33203209 33203427 -248990237 - MIR3 SINE MIR -12 250 15 352 77 64 0 chr1 33203962 33204040 -248989624 + (CA)n Simple_repeat Simple_repeat 1 83 0 441 92 0 0 chr1 33204069 33204134 -248989530 - Alu SINE Alu -7 305 241 251 247 26 52 chr1 33204375 33204452 -248989212 - L2 LINE L2 0 3272 3198 276 276 98 41 chr1 33204551 33204674 -248988990 - MIR SINE MIR -57 151 22 230 81 27 0 chr1 33205223 33205260 -248988404 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1708 165 0 3 chr1 33205312 33205597 -248988067 + AluJb SINE Alu 5 288 -24 425 284 21 0 chr1 33205730 33205871 -248987793 + (TTCA)n Simple_repeat Simple_repeat 4 147 0 281 290 117 33 chr1 33206017 33206231 -248987433 - L2 LINE L2 -850 2464 2233 329 303 63 42 chr1 33207036 33207226 -248986438 + MIR SINE MIR 13 207 -55 314 290 57 16 chr1 33207398 33207522 -248986142 - MIR3 SINE MIR -14 194 66 414 0 0 0 chr1 33207726 33207772 -248985892 + (CA)n Simple_repeat Simple_repeat 2 47 0 1110 277 97 28 chr1 33208389 33209100 -248984564 + L2 LINE L2 2546 3313 0 1576 158 17 20 chr1 33209161 33209458 -248984206 + AluJb SINE Alu 3 298 -14 260 280 93 17 chr1 33209463 33209581 -248984083 - L2 LINE L2 -175 3138 3012 269 356 9 17 chr1 33210049 33210164 -248983500 - MIR SINE MIR -65 143 30 220 307 100 7 chr1 33210372 33210512 -248983152 - MIR3 SINE MIR -1 207 55 2558 95 31 17 chr1 33210814 33211172 -248982492 - THE1B LTR MaLR -1 363 1 1639 129 45 102 chr1 33211172 33211575 -248982089 + L1MA7 LINE L1 5907 6286 -5 371 267 183 69 chr1 33211608 33211810 -248981854 - MIR SINE MIR -19 243 19 494 264 9 0 chr1 33212391 33212497 -248981167 + MER81 DNA DNA 1 107 -7 315 325 141 25 chr1 33212555 33212718 -248980946 + MIR SINE MIR 4 185 -77 356 254 103 113 chr1 33212855 33213040 -248980624 + MIR3 SINE MIR 16 198 -10 254 163 0 0 chr1 33213328 33213371 -248980293 - MIR SINE MIR -85 123 81 262 289 74 67 chr1 33213377 33213526 -248980138 + MIR3 SINE MIR 45 194 -14 248 289 56 67 chr1 33214280 33214460 -248979204 - MIR SINE MIR -71 191 14 296 147 191 15 chr1 33214877 33214945 -248978719 - L2 LINE L2 -1 3312 3233 293 154 0 39 chr1 33216458 33216510 -248977154 + L2 LINE L2 3223 3272 0 1584 222 118 26 chr1 33216723 33217213 -248976451 - MLT1H LTR MaLR 0 549 15 2278 147 23 35 chr1 33217558 33217954 -248975710 - LTR45B LTR ERV1 -96 393 3 462 270 0 4 chr1 33217955 33218095 -248975569 + L3 LINE CR1 1263 1462 -115 545 254 87 16 chr1 33218114 33218299 -248975365 + MIR SINE MIR 11 208 -54 384 202 221 10 chr1 33220864 33220968 -248972696 + MIR SINE MIR 22 147 -115 731 221 49 66 chr1 33221000 33221079 -248972585 + MIR SINE MIR 23 102 -160 4644 87 16 25 chr1 33221079 33221749 -248971915 - MER4A LTR ERV1 0 664 1 731 221 49 66 chr1 33221749 33221913 -248971751 + MIR SINE MIR 102 262 0 504 220 290 9 chr1 33221925 33222206 -248971458 + L2 LINE L2 2706 2907 -406 1753 153 20 103 chr1 33222206 33222419 -248971245 - MLT1A1 LTR MaLR 0 365 136 1582 171 0 11 chr1 33222419 33222706 -248970958 - AluJo SINE Alu -19 293 10 1753 153 20 103 chr1 33222706 33222806 -248970858 - MLT1A1 LTR MaLR -229 136 89 1465 111 43 0 chr1 33222806 33223013 -248970651 - AluSg/x SINE Alu -13 299 84 1753 153 20 103 chr1 33223013 33223096 -248970568 - MLT1A1 LTR MaLR -276 89 1 504 220 290 9 chr1 33223096 33223203 -248970461 + L2 LINE L2 2907 3208 -105 342 269 56 9 chr1 33223205 33223313 -248970351 - MLT1K LTR MaLR -392 196 84 187 187 55 143 chr1 33223519 33223610 -248970054 + MIR SINE MIR 99 181 -81 3019 181 40 32 chr1 33224137 33224768 -248968896 - LTR27 LTR ERV1 0 636 1 189 259 87 32 chr1 33224941 33225126 -248968538 - L2 LINE L2 -419 2895 2701 314 245 20 20 chr1 33225276 33225378 -248968286 - MER5A DNA MER1_type -84 105 4 249 284 159 0 chr1 33225402 33225490 -248968174 - L2 LINE L2 -3 3269 3168 220 343 36 29 chr1 33225722 33225862 -248967802 - MIR3 SINE MIR -67 141 1 302 308 29 0 chr1 33226616 33226720 -248966944 + MIR SINE MIR 76 182 -80 329 192 68 0 chr1 33226872 33226945 -248966719 + LTR16C LTR ERVL 405 482 -9 755 192 87 12 chr1 33227138 33227310 -248966354 - MIR SINE MIR -22 240 56 356 257 243 7 chr1 33227985 33228121 -248965543 + MIR3 SINE MIR 17 184 -24 357 292 159 0 chr1 33228338 33228533 -248965131 + L2 LINE L2 1598 1823 -1491 230 171 219 38 chr1 33228690 33228795 -248964869 - MLT1G LTR MaLR -466 124 1 213 227 45 0 chr1 33229375 33229441 -248964223 + (TA)n Simple_repeat Simple_repeat 2 70 0 207 0 0 0 chr1 33229980 33230003 -248963661 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 842 218 51 17 chr1 33230388 33230622 -248963042 - L1M4 LINE L1 -2061 4085 3844 3491 172 33 12 chr1 33230639 33231308 -248962356 - L1MB3 LINE L1 -3 6180 5498 791 147 0 28 chr1 33231332 33231509 -248962155 + (TTCC)n Simple_repeat Simple_repeat 1 172 0 11824 202 32 17 chr1 33231509 33234515 -248959149 - L1MB3 LINE L1 -683 5488 2468 554 314 142 32 chr1 33234517 33234918 -248958746 + L2 LINE L2 2869 3313 0 198 0 0 0 chr1 33234938 33234960 -248958704 + (T)n Simple_repeat Simple_repeat 1 22 0 423 316 10 0 chr1 33234960 33235085 -248958579 - MIR SINE MIR -62 146 45 553 333 39 12 chr1 33235243 33235501 -248958163 + L2 LINE L2 2831 3095 -177 215 247 175 31 chr1 33235827 33235924 -248957740 - MIR SINE MIR -109 153 43 201 281 125 0 chr1 33235978 33236074 -248957590 - MIR SINE MIR -17 245 138 233 69 0 0 chr1 33236189 33236218 -248957446 - MIR SINE MIR -119 143 115 189 162 27 0 chr1 33237169 33237206 -248956458 - MIR SINE MIR -118 144 107 605 291 75 0 chr1 33237408 33237607 -248956057 + MIR SINE MIR 49 262 0 469 307 51 104 chr1 33237608 33238081 -248955583 - L2 LINE L2 0 3272 2825 425 290 145 0 chr1 33238098 33238291 -248955373 + MIR SINE MIR 28 248 -14 366 275 17 42 chr1 33238303 33238423 -248955241 - L2 LINE L2 -1 3271 3155 1112 194 28 14 chr1 33239076 33239292 -248954372 - MIR SINE MIR -37 225 7 197 329 26 13 chr1 33239362 33239438 -248954226 - L2 LINE L2 -189 3083 3007 235 331 57 46 chr1 33239566 33239741 -248953923 - LTR67 LTR ERVL -378 179 3 1917 162 0 7 chr1 33239971 33240279 -248953385 + L1PA6 LINE L1 4 309 -6152 * 25321 74 11 1 chr1 33240278 33244429 -248949235 + L1PA6 LINE L1 2278 6467 -2 2191 118 0 3 chr1 33244446 33244742 -248948922 + AluSg SINE Alu 1 295 -15 1937 153 3 26 chr1 33244748 33245061 -248948603 + AluJo SINE Alu 2 307 -5 7921 20 2 0 chr1 33246245 33247836 -248945828 - L1PA3 LINE L1 0 6155 4563 234 0 0 0 chr1 33247948 33247974 -248945690 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 1951 115 7 4 chr1 33247974 33248244 -248945420 - AluSx SINE Alu -39 273 3 367 306 48 20 chr1 33248758 33248905 -248944759 + MIR SINE MIR 69 219 -43 402 322 16 8 chr1 33249423 33249544 -248944120 - MIR3 SINE MIR -76 132 11 203 210 16 97 chr1 33249971 33250033 -248943631 - L2 LINE L2 -92 3221 3165 684 276 32 78 chr1 33250103 33250628 -248943036 - LTR33 LTR ERVL 0 521 21 501 309 131 44 chr1 33250638 33251301 -248942363 - L2 LINE L2 -227 3086 2258 1714 176 4 0 chr1 33251375 33251642 -248942022 + AluSx SINE Alu 27 294 -18 586 139 7 0 chr1 33251651 33251764 -248941900 + L1MA8 LINE L1 5997 6114 -177 258 312 43 0 chr1 33252503 33252596 -248941068 + MIR SINE MIR 83 179 -83 534 202 0 0 chr1 33252704 33252882 -248940782 + (CAT)n Simple_repeat Simple_repeat 1 178 0 606 220 2 0 chr1 33252944 33253381 -248940283 + (CAT)n Simple_repeat Simple_repeat 1 438 0 321 270 223 7 chr1 33253443 33253591 -248940073 - MIR3 SINE MIR -3 205 26 378 277 8 31 chr1 33255142 33255272 -248938392 - L2 LINE L2 -227 3045 2919 656 291 66 22 chr1 33255401 33255462 -248938202 + MIR SINE MIR 3 60 -202 1651 218 3 0 chr1 33255462 33255755 -248937909 - AluJo SINE Alu -18 294 1 656 291 66 22 chr1 33255755 33255920 -248937744 + MIR SINE MIR 60 239 -23 306 279 112 6 chr1 33256030 33256138 -248937526 - MIR SINE MIR -76 132 28 210 284 68 0 chr1 33256933 33257021 -248936643 + L2 LINE L2 2978 3071 -201 613 257 40 7 chr1 33257038 33257190 -248936474 - L2 LINE L2 -267 3046 2890 199 162 0 27 chr1 33257283 33257320 -248936344 + L2 LINE L2 3258 3293 -20 208 279 114 14 chr1 33257326 33257466 -248936198 + L3 LINE CR1 1072 1225 -352 311 353 71 0 chr1 33257762 33257932 -248935732 + MIR SINE MIR 63 244 -18 356 314 31 16 chr1 33258624 33258815 -248934849 - LTR16C LTR ERVL 0 491 298 289 278 0 121 chr1 33259069 33259242 -248934422 + L2 LINE L2 3077 3228 -44 320 298 74 0 chr1 33259284 33259405 -248934259 - L2 LINE L2 -17 3296 3167 447 282 9 17 chr1 33259514 33259654 -248934010 - MIR SINE MIR -66 142 21 411 245 224 21 chr1 33259940 33260275 -248933389 - LTR33 LTR ERVL -112 409 7 570 325 52 9 chr1 33260409 33260640 -248933024 - MIR SINE MIR -1 261 21 604 275 79 61 chr1 33260676 33261018 -248932646 - L2 LINE L2 -86 3186 2839 2511 144 59 0 chr1 33261113 33261517 -248932147 - MSTA LTR MaLR 0 428 1 1174 203 37 12 chr1 33261653 33261899 -248931765 + MIR SINE MIR 11 262 0 687 315 60 20 chr1 33261944 33261986 -248931678 - L1ME4a LINE L1 -178 5943 5904 1448 160 115 42 chr1 33261986 33262274 -248931390 - AluJb SINE Alu -3 309 1 687 315 60 20 chr1 33262274 33262682 -248930982 - L1ME4a LINE L1 -217 5904 5475 191 294 109 0 chr1 33262866 33262958 -248930706 + MIR SINE MIR 35 136 -72 323 214 0 0 chr1 33262999 33263055 -248930609 + L2 LINE L2 3249 3304 -9 732 284 44 18 chr1 33263198 33263427 -248930237 + MIR SINE MIR 14 248 -14 183 329 41 0 chr1 33263964 33264037 -248929627 + MIR SINE MIR 157 232 -30 339 25 0 0 chr1 33264781 33264821 -248928843 + (TG)n Simple_repeat Simple_repeat 1 40 0 311 306 61 10 chr1 33265323 33265421 -248928243 - MER5B DNA MER1_type -75 103 1 378 221 118 24 chr1 33265548 33265675 -248927989 + MIR SINE MIR 46 184 -78 291 216 18 81 chr1 33266434 33266545 -248927119 + L3 LINE CR1 1397 1500 -77 923 223 216 20 chr1 33266625 33266930 -248926734 - MLT1A1 LTR MaLR 0 365 1 2772 215 83 72 chr1 33266931 33267245 -248926419 - MLT1A1-int LTR MaLR 0 1735 1426 2120 112 4 0 chr1 33267245 33267523 -248926141 + AluSg SINE Alu 20 298 -12 2772 215 83 72 chr1 33267523 33268540 -248925124 - MLT1A1-int LTR MaLR -309 1426 5 1193 187 72 96 chr1 33268544 33268918 -248924746 - MLT1A1 LTR MaLR 0 365 1 401 299 37 15 chr1 33268930 33269064 -248924600 + MIR SINE MIR 118 254 -8 458 131 24 0 chr1 33269268 33269352 -248924312 + GA-rich Low_complexity Low_complexity 1 86 0 1548 299 26 17 chr1 33269352 33269880 -248923784 + L1MEc LINE L1 111 643 -5753 1840 177 85 34 chr1 33269893 33270163 -248923501 - MLT1C LTR MaLR -4 463 161 1758 164 11 0 chr1 33270163 33270426 -248923238 - AluJb SINE Alu -46 266 1 1840 177 85 34 chr1 33270426 33270591 -248923073 - MLT1C LTR MaLR -306 161 6 1048 246 98 25 chr1 33270595 33270994 -248922670 + L1MEc LINE L1 663 1090 -5306 594 221 56 36 chr1 33270987 33271060 -248922604 + L1MEc LINE L1 1548 1618 -4778 * 2300 131 129 5 chr1 33271060 33271441 -248922223 - MSTA LTR MaLR 0 428 1 594 221 56 36 chr1 33271441 33271562 -248922102 + L1MEc LINE L1 1618 1746 -4650 4169 127 41 35 chr1 33271575 33271925 -248921739 + Tigger3b DNA MER2_type 4 350 -2678 2310 113 0 10 chr1 33271925 33272236 -248921428 + AluSc SINE Alu 1 308 -1 4169 127 41 35 chr1 33272236 33272635 -248921029 + Tigger3b DNA MER2_type 350 758 -473 42602 42 1 3 chr1 33272960 33279127 -248914537 - L1PA4 LINE L1 -3 6152 1 2593 143 48 2 chr1 33279130 33279591 -248914073 + Tigger3b DNA MER2_type 750 1231 0 197 246 58 0 chr1 33279996 33280065 -248913599 - MER5B DNA MER1_type -91 87 15 192 242 0 0 chr1 33280239 33280272 -248913392 - L2 LINE L2 -15 3257 3225 338 61 20 0 chr1 33280319 33280368 -248913296 + (TC)n Simple_repeat Simple_repeat 2 51 0 3140 112 26 68 chr1 33280850 33281394 -248912270 + MER1A DNA MER1_type 1 521 -8 243 0 0 0 chr1 33281443 33281470 -248912194 + (TG)n Simple_repeat Simple_repeat 2 28 0 267 321 9 9 chr1 33281509 33281615 -248912049 - MIR SINE MIR -119 143 38 565 312 142 25 chr1 33282108 33282651 -248911013 + L2 LINE L2 2709 3312 -1 793 188 0 15 chr1 33283353 33283622 -248910042 + (CACCAT)n Simple_repeat Simple_repeat 1 265 0 422 257 0 6 chr1 33283642 33283813 -248909851 + (CAT)n Simple_repeat Simple_repeat 1 170 0 679 208 0 16 chr1 33283843 33284026 -248909638 + (CAT)n Simple_repeat Simple_repeat 1 180 0 576 251 10 8 chr1 33284028 33284422 -248909242 + (CACCAT)n Simple_repeat Simple_repeat 1 395 0 2023 165 19 21 chr1 33284508 33284884 -248908780 + THE1C LTR MaLR 1 375 0 1880 158 43 51 chr1 33285437 33285664 -248908000 - MLT1B LTR MaLR 0 390 166 2287 108 7 0 chr1 33285664 33285960 -248907704 - AluSx SINE Alu -14 298 1 1880 158 43 51 chr1 33285960 33286124 -248907540 - MLT1B LTR MaLR -224 166 2 336 248 0 0 chr1 33286125 33286242 -248907422 + (CAT)n Simple_repeat Simple_repeat 2 118 0 781 219 104 0 chr1 33286250 33286433 -248907231 - MIR SINE MIR -5 257 56 195 367 22 0 chr1 33286465 33286555 -248907109 - L3b LINE CR1 -188 1395 1304 304 243 71 45 chr1 33286763 33286903 -248906761 - MIR SINE MIR -69 139 3 399 299 0 54 chr1 33287365 33287512 -248906152 - MIR SINE MIR -79 183 45 275 274 14 0 chr1 33288015 33288088 -248905576 + L2 LINE L2 3240 3313 0 323 274 126 11 chr1 33288699 33288794 -248904870 - L2 LINE L2 -12 3301 3196 452 277 0 0 chr1 33288901 33289002 -248904662 + MIR SINE MIR 45 145 -63 260 315 46 66 chr1 33289939 33289988 -248903676 - L2 LINE L2 -6 3266 3218 2538 178 63 0 chr1 33289988 33290431 -248903233 - MER70A LTR ERVL 0 472 2 260 315 46 66 chr1 33290431 33290546 -248903118 - L2 LINE L2 -54 3218 3104 4170 102 3 50 chr1 33290546 33291182 -248902482 - LTR14B LTR ERVK 0 608 3 260 315 46 66 chr1 33291182 33291213 -248902451 - L2 LINE L2 -168 3104 3074 1559 178 89 56 chr1 33291329 33291684 -248901980 + MLT2D LTR ERVL 1 372 -42 393 58 0 0 chr1 33291684 33291736 -248901928 + (CA)n Simple_repeat Simple_repeat 1 52 0 1559 178 89 56 chr1 33291736 33291774 -248901890 + MLT2D LTR ERVL 372 407 -7 426 108 0 0 chr1 33291779 33291844 -248901820 + (CAT)n Simple_repeat Simple_repeat 1 65 0 367 226 81 53 chr1 33291864 33292089 -248901575 - MIR SINE MIR -17 245 17 2575 98 13 3 chr1 33293379 33293758 -248899906 - L1PA10 LINE L1 -101 6067 5685 494 310 5 25 chr1 33293761 33293958 -248899706 - L1MEc LINE L1 -4537 1859 1667 199 324 48 19 chr1 33294468 33294573 -248899091 + MIR SINE MIR 34 141 -67 2223 145 39 74 chr1 33295019 33295071 -248898593 + MER65A LTR ERV1 1 53 -392 201 39 0 0 chr1 33295071 33295097 -248898567 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2223 145 39 74 chr1 33295097 33295505 -248898159 + MER65A LTR ERV1 53 445 0 217 170 64 0 chr1 33295734 33295781 -248897883 + A-rich Low_complexity Low_complexity 2 51 0 526 237 100 60 chr1 33295944 33296193 -248897471 - LTR41 LTR ERVL -9 764 506 557 218 12 67 chr1 33296420 33296585 -248897079 - LTR41 LTR ERVL -612 161 6 1726 320 23 18 chr1 33296886 33297540 -248896124 - ERVL LTR ERVL -330 5434 4778 708 251 0 1 chr1 33297540 33297700 -248895964 - ERVL LTR ERVL -1223 4303 4105 270 242 0 0 chr1 33297701 33297763 -248895901 + MLT1H LTR MaLR 488 549 0 272 250 66 0 chr1 33297821 33297897 -248895767 + MIR SINE MIR 5 85 -177 556 297 118 9 chr1 33297951 33298180 -248895484 - MER115 DNA AcHobo -438 255 2 658 247 12 12 chr1 33298240 33298410 -248895254 + MIR SINE MIR 91 260 -2 2153 111 51 20 chr1 33299000 33299353 -248894311 + THE1B LTR MaLR 1 364 0 297 267 133 9 chr1 33299430 33299535 -248894129 - MIR SINE MIR -61 201 84 231 214 0 0 chr1 33300057 33300127 -248893537 + (CCA)n Simple_repeat Simple_repeat 3 72 0 386 242 102 8 chr1 33300492 33300620 -248893044 - MER115 DNA AcHobo -440 253 114 188 298 35 0 chr1 33301364 33301421 -248892243 - L2 LINE L2 -20 3293 3235 337 311 61 28 chr1 33301472 33301684 -248891980 - L2 LINE L2 -172 3100 2882 190 245 142 9 chr1 33301670 33301776 -248891888 - MIR SINE MIR -133 129 10 * 339 183 42 0 chr1 33301911 33301982 -248891682 - MER5A DNA MER1_type -80 109 36 205 189 0 0 chr1 33302929 33302966 -248890698 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 316 313 36 18 chr1 33303021 33303133 -248890531 + L2 LINE L2 3127 3240 -32 362 231 0 0 chr1 33303230 33303308 -248890356 + MIR SINE MIR 47 124 -138 1289 242 109 5 chr1 33303332 33303717 -248889947 + MLT1H LTR MaLR 1 425 -124 2707 131 14 0 chr1 33303766 33304194 -248889470 - MER57B LTR ERV1 0 434 1 249 228 0 0 chr1 33304464 33304521 -248889143 + MIR SINE MIR 68 124 -84 520 312 77 38 chr1 33305181 33305703 -248887961 + L2 LINE L2 2728 3272 0 366 269 37 15 chr1 33306779 33306913 -248886751 + MIR SINE MIR 8 144 -64 205 202 239 37 chr1 33307189 33307298 -248886366 + MIR SINE MIR 16 146 -62 209 211 58 0 chr1 33307749 33307801 -248885863 - L2 LINE L2 -1 3271 3217 390 289 8 16 chr1 33307828 33307956 -248885708 - MLT1K LTR MaLR -8 580 454 335 238 25 0 chr1 33307971 33308051 -248885613 - L2 LINE L2 -38 3275 3194 944 291 93 8 chr1 33308092 33308477 -248885187 - MLT1K LTR MaLR -163 425 8 3780 256 21 25 chr1 33308503 33309764 -248883900 + L1ME1 LINE L1 3121 4377 -1769 306 236 22 22 chr1 33309796 33309885 -248883779 - L1M4 LINE L1 -1214 4932 4844 810 213 9 5 chr1 33309921 33310132 -248883532 + L1ME1 LINE L1 4385 4596 -1550 601 223 40 76 chr1 33310323 33310547 -248883117 - LTR52 LTR ERVL -202 219 4 2089 102 53 11 chr1 33310584 33310868 -248882796 - AluSx SINE Alu -11 301 6 359 303 16 25 chr1 33310894 33311016 -248882648 - L1MC4 LINE L1 -1323 6719 6599 266 104 91 0 chr1 33311019 33311096 -248882568 + (TA)n Simple_repeat Simple_repeat 1 84 0 2965 219 65 31 chr1 33311098 33311200 -248882464 + L1ME1 LINE L1 4613 4710 -1624 1863 177 0 22 chr1 33311200 33311516 -248882148 + AluJo SINE Alu 4 312 0 2965 219 65 31 chr1 33311516 33312941 -248880723 + L1ME1 LINE L1 4710 6334 0 184 289 58 29 chr1 33313120 33313224 -248880440 + L2 LINE L2 3127 3233 -39 219 261 102 0 chr1 33313804 33313892 -248879772 + MIR SINE MIR 43 139 -69 358 203 236 123 chr1 33314259 33314471 -248879193 - MIR SINE MIR -19 243 8 272 158 232 12 chr1 33315469 33315551 -248878113 + MIR SINE MIR 32 131 -77 693 230 0 0 chr1 33315655 33315833 -248877831 + CT-rich Low_complexity Low_complexity 3 180 0 366 156 0 0 chr1 33316394 33316458 -248877206 + CT-rich Low_complexity Low_complexity 4 67 0 289 203 0 78 chr1 33316840 33316968 -248876696 + (GGGTG)n Simple_repeat Simple_repeat 3 120 0 605 173 0 0 chr1 33317625 33317729 -248875935 - MIR SINE MIR -87 175 72 411 273 19 32 chr1 33317772 33317926 -248875738 - MIR3 SINE MIR -28 180 29 429 110 0 0 chr1 33318777 33318850 -248874814 + (CA)n Simple_repeat Simple_repeat 2 74 0 1224 101 0 0 chr1 33319657 33319835 -248873829 + (TGG)n Simple_repeat Simple_repeat 2 179 0 270 207 218 0 chr1 33319904 33319991 -248873673 - MER91C DNA MER1_type -34 106 1 368 196 47 65 chr1 33320044 33320151 -248873513 + L2 LINE L2 3137 3241 -31 211 170 21 0 chr1 33320819 33320866 -248872798 - L2 LINE L2 -30 3242 3195 604 223 89 40 chr1 33320962 33321164 -248872500 - MIR SINE MIR -23 239 28 437 318 23 0 chr1 33321633 33321806 -248871858 + MLT1I LTR MaLR 2 178 -231 580 301 44 49 chr1 33322278 33322667 -248870997 - L2 LINE L2 0 3272 2886 263 226 0 32 chr1 33322811 33322873 -248870791 + L2 LINE L2 3207 3266 -6 1419 255 13 19 chr1 33323589 33323962 -248869702 - MLT1A2 LTR MaLR 0 374 4 532 309 106 0 chr1 33324473 33324690 -248868974 + MIR SINE MIR 23 262 0 807 241 15 19 chr1 33324832 33325049 -248868615 + MIR SINE MIR 5 213 -49 351 284 1 43 chr1 33325103 33325243 -248868421 - MIR SINE MIR -46 162 27 294 306 31 0 chr1 33325475 33325573 -248868091 - MIR SINE MIR -114 148 48 411 272 51 32 chr1 33325639 33325797 -248867867 - MIR SINE MIR -70 192 32 247 278 0 0 chr1 33327139 33327193 -248866471 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 276 289 133 0 chr1 33327332 33327422 -248866242 - MIR SINE MIR -70 192 91 552 217 7 22 chr1 33328293 33328431 -248865233 - MIR SINE MIR -115 147 12 433 293 0 8 chr1 33328863 33328996 -248864668 - MIR3 SINE MIR -36 172 41 484 230 97 9 chr1 33329133 33329246 -248864418 - L2 LINE L2 0 3313 3191 445 237 133 0 chr1 33329681 33329816 -248863848 + MIR3 SINE MIR 46 198 -10 254 226 183 11 chr1 33330054 33330147 -248863517 + MIR SINE MIR 37 145 -63 194 184 0 0 chr1 33330214 33330252 -248863412 + MIR SINE MIR 82 119 -89 673 305 74 30 chr1 33330719 33331122 -248862542 + L1MC4 LINE L1 5517 5937 -1871 394 287 177 55 chr1 33331347 33331657 -248862007 - L1ME4a LINE L1 -96 6025 5678 223 321 0 0 chr1 33332075 33332131 -248861533 - MIR SINE MIR -199 63 8 2074 125 3 23 chr1 33332347 33332650 -248861014 + AluSx SINE Alu 8 304 -8 885 273 55 18 chr1 33333059 33333545 -248860119 + L2 LINE L2 2585 3087 -226 2188 128 3 0 chr1 33333644 33333941 -248859723 + AluSq SINE Alu 1 298 -15 245 186 119 0 chr1 33334114 33334173 -248859491 - LTR31 LTR ERV1 -266 353 288 1667 174 61 14 chr1 33335224 33335569 -248858095 + MLT2D LTR ERVL 4 364 -50 2283 68 45 3 chr1 33335571 33335863 -248857801 + AluY SINE Alu 1 304 -7 396 0 0 0 chr1 33335882 33335926 -248857738 + (CA)n Simple_repeat Simple_repeat 2 45 0 304 209 9 114 chr1 33335926 33336031 -248857633 + L1MC4 LINE L1 6606 6699 -1343 268 167 56 0 chr1 33336034 33336088 -248857576 + MLT2D LTR ERVL 464 520 0 234 296 6 69 chr1 33336584 33336743 -248856921 + L2 LINE L2 2884 3032 -240 886 306 157 26 chr1 33336743 33337263 -248856401 + L1MEd LINE L1 2 452 -5677 2072 122 32 0 chr1 33337263 33337542 -248856122 + AluSc SINE Alu 1 288 -21 886 306 157 26 chr1 33337542 33338400 -248855264 + L1MEd LINE L1 452 1564 -4565 995 263 112 110 chr1 33338844 33339208 -248854456 + L1MEd LINE L1 2720 3082 -3047 1938 155 0 10 chr1 33339208 33339498 -248854166 + AluJo SINE Alu 3 289 -23 995 263 112 110 chr1 33339498 33340827 -248852837 + L1MEd LINE L1 3082 4417 -1712 869 112 8 24 chr1 33341120 33341245 -248852419 + FLAM_C SINE Alu 1 123 -20 249 203 71 6 chr1 33341277 33341367 -248852297 - MIR SINE MIR -76 132 32 434 311 94 30 chr1 33341444 33341950 -248851714 - L2 LINE L2 -47 3225 2694 374 217 182 14 chr1 33342346 33342489 -248851175 - MLT1K LTR MaLR -281 307 141 186 309 83 69 chr1 33342655 33342859 -248850805 + L2 LINE L2 2993 3199 -73 8134 170 107 21 chr1 33343283 33344898 -248848766 + MER52A LTR ERV1 1 1754 -1 450 273 20 107 chr1 33344933 33345158 -248848506 + L1MC4a LINE L1 5610 5645 -476 2244 131 0 3 chr1 33345158 33345471 -248848193 + AluSq SINE Alu 1 312 -1 450 273 20 107 chr1 33345471 33345637 -248848027 + L1MC4a LINE L1 5645 5824 -297 338 281 128 32 chr1 33345796 33346077 -248847587 + L1ME4a LINE L1 5658 5971 -150 394 303 59 7 chr1 33346142 33346294 -248847370 + MIR SINE MIR 48 207 -55 406 222 22 0 chr1 33347126 33347216 -248846448 - L2 LINE L2 -17 3296 3205 1409 136 4 4 chr1 33347403 33347666 -248845998 - AluJo SINE Alu 0 346 84 238 284 68 34 chr1 33347867 33347955 -248845709 - L2 LINE L2 -8 3305 3215 360 0 0 0 chr1 33348298 33348338 -248845326 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 206 30 91 0 chr1 33348338 33348371 -248845293 + T-rich Low_complexity Low_complexity 2 37 0 264 273 0 0 chr1 33348656 33348722 -248844942 + MIR SINE MIR 81 146 -62 632 322 77 0 chr1 33348863 33349096 -248844568 + MIR SINE MIR 2 252 -10 2143 263 69 24 chr1 33351086 33351840 -248841824 + L2 LINE L2 2057 2844 -470 267 79 0 0 chr1 33351936 33351974 -248841690 + (GA)n Simple_repeat Simple_repeat 1 38 0 1500 122 54 0 chr1 33352790 33353011 -248840653 - AluSx SINE Alu -23 289 57 188 196 0 20 chr1 33354078 33354129 -248839535 + CT-rich Low_complexity Low_complexity 2 51 0 207 0 0 0 chr1 33354834 33354857 -248838807 + (T)n Simple_repeat Simple_repeat 1 23 0 225 378 94 0 chr1 33355112 33355292 -248838372 - MIR SINE MIR -15 247 51 341 367 30 12 chr1 33355492 33355661 -248838003 + MIR SINE MIR 20 191 -71 593 125 0 0 chr1 33355685 33355773 -248837891 + FRAM SINE Alu 43 130 -46 193 214 0 0 chr1 33355922 33355964 -248837700 + MIR SINE MIR 49 90 -172 215 288 99 0 chr1 33356418 33356529 -248837135 - MIR SINE MIR -77 185 64 571 171 13 38 chr1 33356745 33356987 -248836677 + GA-rich Low_complexity Low_complexity 1 235 0 408 315 155 10 chr1 33357484 33357684 -248835980 + MIR SINE MIR 20 248 -14 286 248 37 32 chr1 33358296 33358438 -248835226 - MIR3 SINE MIR -94 114 6 276 292 0 18 chr1 33359326 33359439 -248834225 + (TGAA)n Simple_repeat Simple_repeat 1 111 0 488 244 42 8 chr1 33359503 33359648 -248834016 - MIR SINE MIR -48 160 11 454 307 122 67 chr1 33360117 33360371 -248833293 + L3 LINE CR1 1309 1576 -1 228 211 0 0 chr1 33360792 33360830 -248832834 + polypurine Low_complexity Low_complexity 1 38 0 194 283 19 0 chr1 33362098 33362151 -248831513 + L2 LINE L2 3214 3267 -46 228 211 0 0 chr1 33363156 33363194 -248830470 + polypurine Low_complexity Low_complexity 1 38 0 591 289 38 34 chr1 33363201 33363435 -248830229 - MIR SINE MIR -18 244 10 336 255 174 8 chr1 33363512 33363671 -248829993 + MIR SINE MIR 17 192 -56 1080 122 2 9 chr1 33363810 33364206 -248829458 + (TCCA)n Simple_repeat Simple_repeat 2 568 0 240 167 0 0 chr1 33364218 33364266 -248829398 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 347 334 102 34 chr1 33364470 33364926 -248828738 - L2 LINE L2 -179 3093 2616 677 333 171 26 chr1 33365204 33366497 -248827167 + L2 LINE L2 1291 2770 -544 285 335 149 29 chr1 33366674 33366916 -248826748 + L2 LINE L2 2978 3248 -24 1148 82 46 0 chr1 33366927 33367268 -248826396 + (TGGA)n Simple_repeat Simple_repeat 1 356 0 450 302 73 0 chr1 33367936 33368128 -248825536 - MIR SINE MIR -24 238 33 261 57 0 0 chr1 33368520 33368555 -248825109 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 383 300 80 34 chr1 33368718 33368981 -248824683 + L2 LINE L2 2004 2278 -1036 328 335 65 0 chr1 33369694 33369751 -248823913 + MIR SINE MIR 95 147 -115 3075 139 20 16 chr1 33369751 33370246 -248823418 + LOR1a LTR ERV1 1 497 0 328 335 65 0 chr1 33370246 33370343 -248823321 + MIR SINE MIR 147 259 -3 824 104 0 0 chr1 33370418 33370533 -248823131 - AluSg/x SINE Alu -12 300 186 332 323 77 10 chr1 33371659 33371854 -248821810 - MIR SINE MIR -33 229 22 308 117 100 0 chr1 33372448 33372508 -248821156 + L1MA9 LINE L1 6208 6273 -39 25 0 0 0 chr1 33372524 33372549 -248821115 + AT_rich Low_complexity Low_complexity 1 25 0 301 300 86 30 chr1 33372652 33372824 -248820840 + MIR3 SINE MIR 3 180 -62 404 345 75 18 chr1 33372993 33373219 -248820445 + L2 LINE L2 3075 3313 0 820 257 30 45 chr1 33373323 33373588 -248820076 + MIR SINE MIR 2 262 0 231 333 29 29 chr1 33373728 33373833 -248819831 + MIR SINE MIR 27 131 -131 301 311 41 49 chr1 33373945 33374067 -248819597 + L2 LINE L2 3151 3271 -1 281 272 62 0 chr1 33374238 33374319 -248819345 + MIR SINE MIR 88 173 -89 388 354 33 23 chr1 33374356 33374571 -248819093 - L2 LINE L2 -469 2845 2629 288 310 97 41 chr1 33374638 33374787 -248818877 + MIR SINE MIR 5 159 -63 247 323 57 24 chr1 33376731 33376855 -248816809 + L2 LINE L2 3145 3272 0 289 331 90 14 chr1 33376925 33377070 -248816594 + MIR SINE MIR 47 202 -60 372 164 0 0 chr1 33377449 33377516 -248816148 + (CA)n Simple_repeat Simple_repeat 1 67 0 417 280 131 6 chr1 33378689 33378857 -248814807 - MIR SINE MIR -62 200 12 483 296 179 0 chr1 33378901 33379080 -248814584 + MIR SINE MIR 50 260 -2 182 276 48 103 chr1 33379545 33379690 -248813974 - MIR SINE MIR -6 256 120 256 239 30 15 chr1 33379794 33379861 -248813803 + MIR3 SINE MIR 97 164 -44 262 315 176 24 chr1 33380471 33380636 -248813028 - MIR SINE MIR -19 243 54 270 224 95 86 chr1 33381227 33381343 -248812321 + L2 LINE L2 3189 3305 -8 258 234 104 39 chr1 33381358 33381435 -248812229 - MIR SINE MIR -57 205 124 2480 42 3 10 chr1 33381725 33382034 -248811630 - AluY SINE Alu -4 307 1 452 256 24 36 chr1 33382468 33382636 -248811028 + C-rich Low_complexity Low_complexity 6 171 0 311 237 27 0 chr1 33382655 33382805 -248810859 + C-rich Low_complexity Low_complexity 1 154 0 253 238 0 113 chr1 33383973 33384053 -248809611 + MIR3 SINE MIR 97 167 -41 355 178 137 0 chr1 33384547 33384620 -248809044 + MIR SINE MIR 66 148 -114 597 281 60 0 chr1 33384989 33385174 -248808490 - MIR SINE MIR -54 208 13 351 275 162 0 chr1 33385289 33385431 -248808233 + MIR SINE MIR 49 213 -49 355 228 65 0 chr1 33386057 33386149 -248807515 + MIR SINE MIR 86 183 -79 424 248 59 0 chr1 33386588 33386689 -248806975 + MIR SINE MIR 46 152 -110 209 264 8 139 chr1 33386868 33386997 -248806667 - MIR3 SINE MIR -16 192 81 245 247 164 0 chr1 33387016 33387089 -248806575 + MIR SINE MIR 63 147 -115 735 221 77 6 chr1 33388308 33388489 -248805175 + MIR SINE MIR 2 195 -67 364 276 230 7 chr1 33388486 33388638 -248805026 - MIR SINE MIR -57 205 20 * 482 252 11 16 chr1 33388846 33388982 -248804682 + MIR3 SINE MIR 15 150 -81 255 159 0 0 chr1 33389080 33389124 -248804540 + L1ME2 LINE L1 6112 6155 -9 496 253 13 39 chr1 33389253 33389407 -248804257 - MIR SINE MIR -67 195 46 410 289 47 0 chr1 33389647 33389775 -248803889 + L2 LINE L2 3138 3271 -1 236 309 64 18 chr1 33390999 33391109 -248802555 + MIR SINE MIR 28 142 -66 1912 171 7 0 chr1 33391196 33391505 -248802159 - AluJb SINE Alu -1 311 1 384 177 45 30 chr1 33391535 33391638 -248802026 - MLT1I LTR MaLR -2 407 319 271 240 10 10 chr1 33391956 33392056 -248801608 + CT-rich Low_complexity Low_complexity 3 102 0 195 217 22 0 chr1 33392183 33392229 -248801435 - L3b LINE CR1 -2 1581 1535 773 266 49 4 chr1 33392588 33392814 -248800850 + LTR16C LTR ERVL 227 462 -29 188 357 40 50 chr1 33393661 33393860 -248799804 + L2 LINE L2 2177 2373 -941 189 320 27 13 chr1 33394086 33394161 -248799503 + MIR SINE MIR 49 124 -84 297 240 100 10 chr1 33394939 33395039 -248798625 + MIR SINE MIR 32 140 -68 182 324 108 10 chr1 33395250 33395352 -248798312 + L2 LINE L2 2695 2806 -508 322 245 20 87 chr1 33395442 33395638 -248798026 + MLT1K LTR MaLR 386 568 -20 322 328 215 21 chr1 33395745 33396080 -248797584 + L2 LINE L2 2832 3231 -41 320 252 25 0 chr1 33396224 33396343 -248797321 + (TG)n Simple_repeat Simple_repeat 2 123 0 379 258 19 6 chr1 33396723 33396882 -248796782 + (TG)n Simple_repeat Simple_repeat 2 162 0 1500 241 146 25 chr1 33398600 33399114 -248794550 + MLT1K LTR MaLR 13 588 0 184 254 17 51 chr1 33399114 33399173 -248794491 - MIR SINE MIR -115 147 91 409 332 105 18 chr1 33399187 33399416 -248794248 + L2 LINE L2 2938 3186 -86 198 103 0 0 chr1 33399479 33399508 -248794156 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 485 280 30 0 chr1 33399510 33399642 -248794022 - MIR3 SINE MIR -14 194 59 420 315 8 0 chr1 33400001 33400128 -248793536 - L3 LINE CR1 -81 1496 1369 435 210 32 51 chr1 33400817 33400915 -248792749 + L1ME4a LINE L1 5967 6062 -59 1873 171 0 7 chr1 33400915 33401225 -248792439 - AluJo SINE Alu -4 308 1 435 210 32 51 chr1 33401225 33401283 -248792381 + L1ME4a LINE L1 6062 6120 -1 664 325 80 64 chr1 33401284 33401721 -248791943 - L3 LINE CR1 -187 1390 947 288 212 40 111 chr1 33401748 33401847 -248791817 - MIR SINE MIR -139 123 32 895 264 62 65 chr1 33402410 33402623 -248791041 + LTR16A1 LTR ERVL 27 239 -218 2109 228 114 4 chr1 33402623 33403132 -248790532 + MLT1F1 LTR MaLR 1 565 -2 895 264 62 65 chr1 33403132 33403350 -248790314 + LTR16A1 LTR ERVL 239 457 0 262 211 0 0 chr1 33403352 33403404 -248790260 - MIR SINE MIR -141 121 70 268 268 0 14 chr1 33403710 33403781 -248789883 - MIR SINE MIR -119 89 20 272 308 107 35 chr1 33404020 33404189 -248789475 - MIR SINE MIR -12 250 70 191 244 211 0 chr1 33404683 33404773 -248788891 - MIR SINE MIR -66 196 88 * 281 271 57 14 chr1 33404746 33404886 -248788778 - L2 LINE L2 -214 3058 2913 181 123 14 68 chr1 33405434 33405507 -248788157 + GA-rich Low_complexity Low_complexity 5 73 0 517 142 71 0 chr1 33405554 33405709 -248787955 + GA-rich Low_complexity Low_complexity 2 167 0 * 773 234 0 4 chr1 33405691 33405939 -248787725 + G-rich Low_complexity Low_complexity 1 247 0 197 207 0 35 chr1 33405933 33405991 -248787673 + A-rich Low_complexity Low_complexity 1 56 0 * 555 141 0 0 chr1 33405996 33406088 -248787576 + (G)n Simple_repeat Simple_repeat 1 92 0 196 380 0 14 chr1 33406799 33406870 -248786794 + L2 LINE L2 3104 3173 -99 429 247 140 7 chr1 33407753 33407903 -248785761 - L2 LINE L2 -423 2891 2722 263 314 36 36 chr1 33407990 33408127 -248785537 - MIR3 SINE MIR -57 151 15 840 285 0 5 chr1 33408387 33408601 -248785063 + MIR SINE MIR 2 214 -48 341 237 144 0 chr1 33408831 33408928 -248784736 + MIR SINE MIR 148 258 -4 282 56 0 0 chr1 33409010 33409046 -248784618 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 249 278 287 9 chr1 33409142 33409257 -248784407 - L3 LINE CR1 -5 1572 1426 382 399 66 7 chr1 33409310 33409581 -248784083 - L3 LINE CR1 -499 1078 792 494 224 124 58 chr1 33409582 33409805 -248783859 + MIR SINE MIR 8 248 -14 321 284 57 74 chr1 33410101 33410277 -248783387 + L3 LINE CR1 1391 1563 -14 256 246 0 0 chr1 33410371 33410428 -248783236 - MIR SINE MIR -87 121 65 258 270 51 34 chr1 33410525 33410703 -248782961 - Charlie7 DNA MER1_type -17 2595 2415 444 283 17 50 chr1 33410877 33411074 -248782590 - MIR SINE MIR -59 149 3 223 278 48 75 chr1 33411239 33411405 -248782259 - MIR SINE MIR -70 192 34 432 286 164 9 chr1 33411494 33411714 -248781950 - MIR SINE MIR -6 256 3 229 311 126 0 chr1 33411793 33411912 -248781752 + MIR3 SINE MIR 15 148 -60 536 256 108 24 chr1 33412395 33412605 -248781059 + MIR SINE MIR 19 248 -14 294 381 46 0 chr1 33412815 33412988 -248780676 - L2 LINE L2 -192 3080 2900 298 301 28 42 chr1 33413040 33413183 -248780481 - MIR3 SINE MIR -66 142 2 286 298 14 21 chr1 33413573 33413714 -248779950 + (ATGGTG)n Simple_repeat Simple_repeat 6 145 0 448 306 41 24 chr1 33414528 33414698 -248778966 + MIR SINE MIR 28 200 -62 1220 280 51 11 chr1 33414767 33415220 -248778444 + L1ME3A LINE L1 5700 6170 0 237 201 288 50 chr1 33415384 33415523 -248778141 - L2 LINE L2 -251 3062 2891 299 119 169 0 chr1 33416138 33416197 -248777467 + MER2 DNA MER2_type 277 345 0 254 168 142 0 chr1 33416405 33416499 -248777165 + MIR SINE MIR 33 147 -61 2111 121 0 0 chr1 33417171 33417461 -248776203 + AluSx SINE Alu 1 290 -22 314 290 40 40 chr1 33417543 33417667 -248775997 - MIR SINE MIR -79 183 60 220 304 49 29 chr1 33417744 33417846 -248775818 - L2 LINE L2 -216 3056 2953 257 325 68 8 chr1 33417940 33418057 -248775607 + MIR3 SINE MIR 64 187 -21 343 325 146 26 chr1 33418100 33418442 -248775222 + L2 LINE L2 2826 3208 -64 1679 99 126 4 chr1 33418534 33418796 -248774868 - AluSx SINE Alu -18 294 1 3187 218 45 11 chr1 33418830 33419629 -248774035 + L1MC3 LINE L1 6937 7762 -23 1948 157 0 13 chr1 33419964 33420277 -248773387 + AluJo SINE Alu 1 309 -3 743 191 88 52 chr1 33420891 33421085 -248772579 + MER20 DNA MER1_type 1 201 -18 596 312 57 19 chr1 33421416 33421730 -248771934 + MER102b DNA MER1_type 16 341 0 440 202 75 0 chr1 33421750 33421844 -248771820 - MIR SINE MIR -60 148 48 195 257 43 29 chr1 33421970 33422040 -248771624 + L3 LINE CR1 1504 1574 -3 970 232 24 24 chr1 33422087 33422333 -248771331 - MIR SINE MIR -4 258 13 210 297 11 44 chr1 33422434 33422525 -248771139 + L3b LINE CR1 1340 1427 -156 182 306 0 0 chr1 33422656 33422705 -248770959 - MIR SINE MIR -104 104 56 322 220 44 22 chr1 33423187 33423278 -248770386 - MIR SINE MIR -58 150 58 505 311 36 18 chr1 33423708 33423930 -248769734 - MIR SINE MIR -5 257 32 856 251 5 0 chr1 33423960 33424151 -248769513 - MIR SINE MIR -43 219 28 496 207 14 35 chr1 33425367 33425512 -248768152 - MER113 DNA MER1_type? -348 173 32 429 272 44 68 chr1 33425529 33425705 -248767959 + MIR SINE MIR 34 206 -56 216 333 0 14 chr1 33425751 33425823 -248767841 - MIR SINE MIR -108 100 30 2068 203 100 24 chr1 33426039 33426508 -248767156 + MLT1D LTR MaLR 1 505 0 368 291 29 0 chr1 33426599 33426702 -248766962 + MIR SINE MIR 62 167 -95 186 286 8 0 chr1 33427446 33427507 -248766157 - MIR SINE MIR -87 121 59 188 325 75 0 chr1 33428305 33428385 -248765279 + MIR SINE MIR 106 191 -71 195 42 0 0 chr1 33428654 33428678 -248764986 + (GAA)n Simple_repeat Simple_repeat 2 25 0 438 273 114 23 chr1 33428770 33428990 -248764674 + MLT1L LTR MaLR 303 542 -73 538 280 15 0 chr1 33429028 33429160 -248764504 - L2 LINE L2 -46 3267 3134 287 345 7 56 chr1 33429193 33429335 -248764329 + MIR3 SINE MIR 48 182 -26 312 27 0 0 chr1 33429709 33429746 -248763918 + (CA)n Simple_repeat Simple_repeat 1 37 0 1767 176 10 0 chr1 33430225 33430521 -248763143 - AluJo SINE Alu -13 299 1 362 198 126 63 chr1 33430796 33430907 -248762757 - L2 LINE L2 0 3313 3196 444 346 22 22 chr1 33431158 33431337 -248762327 + MIR SINE MIR 9 187 -75 241 304 18 0 chr1 33431991 33432074 -248761590 - MIR SINE MIR -90 172 89 334 345 27 66 chr1 33432298 33432556 -248761108 - L1ME4a LINE L1 -5 6116 5869 189 0 0 0 chr1 33432571 33432592 -248761072 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2043 98 11 0 chr1 33432603 33432877 -248760787 - AluSq SINE Alu -36 277 1 1266 304 49 16 chr1 33432879 33433455 -248760209 - L1MC4a LINE L1 -1958 5850 5256 2414 82 3 0 chr1 33433516 33433820 -248759844 - AluSx SINE Alu -7 305 1 225 127 44 0 chr1 33434208 33434253 -248759411 + MIR SINE MIR 102 149 -59 227 206 0 48 chr1 33434366 33434429 -248759235 - L2 LINE L2 -205 3067 3008 401 272 6 74 chr1 33434508 33434670 -248758994 - MIR SINE MIR -66 196 46 305 237 86 11 chr1 33435435 33435528 -248758136 - MIR SINE MIR -88 120 21 1542 144 11 29 chr1 33435604 33435881 -248757783 + AluJo SINE Alu 35 306 -6 251 219 45 77 chr1 33435908 33436012 -248757652 + MIR3 SINE MIR 79 157 -51 23 0 0 0 chr1 33436302 33436325 -248757339 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 33436415 33436442 -248757222 + (CA)n Simple_repeat Simple_repeat 1 27 0 879 263 177 7 chr1 33436508 33437296 -248756368 + L1MC4 LINE L1 6824 7904 -138 606 122 0 0 chr1 33437446 33437528 -248756136 - AluJ/FRAM SINE Alu -14 298 217 2088 136 0 3 chr1 33437538 33437839 -248755825 - AluJb SINE Alu -12 300 1 921 148 0 0 chr1 33437839 33437974 -248755690 - AluJo SINE Alu -177 135 1 259 294 71 0 chr1 33438171 33438297 -248755367 + MIR3 SINE MIR 49 183 -25 321 208 75 47 chr1 33438300 33438406 -248755258 + MIR SINE MIR 33 141 -121 1495 153 52 22 chr1 33439262 33439530 -248754134 + AluJb SINE Alu 1 276 -36 438 69 0 0 chr1 33439536 33439594 -248754070 + (GGAGA)n Simple_repeat Simple_repeat 5 62 0 1798 131 39 23 chr1 33441640 33441928 -248751736 + AluSx SINE Alu 1 296 -16 1455 0 0 32 chr1 33441928 33442114 -248751550 + (GGAAA)n Simple_repeat Simple_repeat 1 180 0 1798 131 39 23 chr1 33442114 33442131 -248751533 + AluSx SINE Alu 296 311 -1 215 81 97 32 chr1 33442138 33442200 -248751464 + GA-rich Low_complexity Low_complexity 1 66 0 611 259 25 0 chr1 33442760 33442918 -248750746 - MIR SINE MIR -71 191 30 268 338 140 6 chr1 33442885 33443042 -248750622 + MIR SINE MIR 20 197 -65 * 520 190 344 0 chr1 33444006 33444169 -248749495 + MIR SINE MIR 21 239 -23 558 256 39 118 chr1 33444198 33444553 -248749111 + MLT1K LTR MaLR 97 423 -165 446 266 53 2 chr1 33444673 33444806 -248748858 - MIR SINE MIR -42 166 28 601 273 53 38 chr1 33444911 33445120 -248748544 + MIR SINE MIR 48 259 -3 263 285 36 7 chr1 33445216 33445349 -248748315 - MIR SINE MIR -61 147 13 335 233 14 0 chr1 33445578 33445651 -248748013 + MIR SINE MIR 84 157 -105 4274 164 5 28 chr1 33445683 33445722 -248747942 + L1MB3 LINE L1 5433 5471 -712 1882 149 0 32 chr1 33445722 33446031 -248747633 - AluJb SINE Alu -13 299 1 4274 164 5 28 chr1 33446031 33446739 -248746925 + L1MB3 LINE L1 5471 6193 10 2816 117 9 47 chr1 33446739 33446826 -248746838 + MSTC LTR MaLR 1 90 -338 1866 98 0 128 chr1 33446826 33446885 -248746779 - AluSx SINE Alu 0 312 247 207 0 0 0 chr1 33446885 33446908 -248746756 + (GAGTG)n Simple_repeat Simple_repeat 5 27 0 1866 98 0 128 chr1 33446908 33446936 -248746728 - AluSx SINE Alu -65 247 217 228 67 0 0 chr1 33446936 33446966 -248746698 + (GAGTG)n Simple_repeat Simple_repeat 5 34 0 1866 98 0 128 chr1 33446966 33446994 -248746670 - AluSx SINE Alu -95 217 187 360 0 0 0 chr1 33446994 33447034 -248746630 + (GAGTG)n Simple_repeat Simple_repeat 5 44 0 1866 98 0 128 chr1 33447034 33447274 -248746390 - AluSx SINE Alu -125 187 1 2816 117 9 47 chr1 33447274 33447630 -248746034 + MSTC LTR MaLR 90 427 -1 4274 164 5 28 chr1 33447630 33447642 -248746022 + L1MB3 LINE L1 6192 6176 -7 216 308 112 35 chr1 33447667 33447810 -248745854 - L2 LINE L2 -246 3026 2873 225 275 13 30 chr1 33448241 33448455 -248745209 + CT-rich Low_complexity Low_complexity 1 210 0 458 326 99 27 chr1 33448681 33448975 -248744689 - L2 LINE L2 -46 3267 2953 740 324 69 6 chr1 33449113 33449474 -248744190 + L1ME LINE L1 5384 5767 -354 2217 113 7 0 chr1 33449599 33449908 -248743756 - AluSx SINE Alu -1 311 1 237 169 13 104 chr1 33449909 33449986 -248743678 + MIR SINE MIR 63 132 -130 321 310 127 6 chr1 33450110 33450268 -248743396 - MIR SINE MIR -48 214 38 351 200 0 27 chr1 33450281 33450356 -248743308 + L2 LINE L2 2987 3059 -213 269 310 132 0 chr1 33450679 33450808 -248742856 + MIR SINE MIR 117 262 0 37 23 0 0 chr1 33451112 33451156 -248742508 + GC_rich Low_complexity Low_complexity 1 44 0 785 256 65 24 chr1 33451297 33451543 -248742121 + MIR SINE MIR 7 262 0 374 250 102 23 chr1 33451617 33451745 -248741919 + MIR SINE MIR 51 188 -74 197 318 35 24 chr1 33451853 33451938 -248741726 - MIR SINE MIR -136 126 41 209 263 126 21 chr1 33452089 33452184 -248741480 + MIR SINE MIR 40 144 -118 605 186 148 60 chr1 33452574 33452757 -248740907 - MIR SINE MIR -51 211 13 384 261 97 57 chr1 33453415 33453591 -248740073 + L2 LINE L2 2924 3106 -166 687 259 48 5 chr1 33453682 33453871 -248739793 - MIR SINE MIR -2 260 64 290 339 24 8 chr1 33454066 33454103 -248739561 - MIR SINE MIR -77 185 150 1436 169 17 0 chr1 33454103 33454334 -248739330 + MER46A DNA MER2_type 2 236 0 290 339 24 8 chr1 33454334 33454420 -248739244 - MIR SINE MIR -112 150 60 673 274 95 17 chr1 33454661 33454902 -248738762 + MIR SINE MIR 3 262 0 446 294 18 76 chr1 33455087 33455168 -248738496 + MIR SINE MIR 25 109 -153 1428 158 44 57 chr1 33455168 33455350 -248738314 - AluJo SINE Alu 0 312 129 2100 121 3 0 chr1 33455350 33455648 -248738016 - AluSp SINE Alu -14 299 1 1428 158 44 57 chr1 33455648 33455666 -248737998 - AluJo SINE Alu -183 129 112 2170 112 3 3 chr1 33455666 33455979 -248737685 - AluSq SINE Alu 0 313 1 1428 158 44 57 chr1 33455979 33456093 -248737571 - AluJo SINE Alu -200 112 1 446 294 18 76 chr1 33456093 33456205 -248737459 + MIR SINE MIR 109 215 -47 237 283 94 9 chr1 33456706 33456812 -248736852 - MIR3 SINE MIR -4 204 90 471 18 0 0 chr1 33457071 33457127 -248736537 + (TG)n Simple_repeat Simple_repeat 2 57 0 251 323 0 40 chr1 33457429 33457528 -248736136 - HERV30 LTR ERV1 -4364 3893 3799 216 97 0 0 chr1 33457579 33457610 -248736054 + (TG)n Simple_repeat Simple_repeat 2 32 0 306 286 124 10 chr1 33457816 33458009 -248735655 + MIR SINE MIR 23 241 -21 316 300 96 23 chr1 33458071 33458291 -248735373 + L2 LINE L2 2820 3055 -217 235 102 20 20 chr1 33458329 33458378 -248735286 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 376 361 75 14 chr1 33458378 33458697 -248734967 - HAL1 LINE L1 -1218 1289 982 330 202 20 10 chr1 33458814 33458913 -248734751 + CT-rich Low_complexity Low_complexity 1 100 0 906 191 6 0 chr1 33458913 33459070 -248734594 - FRAM SINE Alu -18 158 1 443 303 37 32 chr1 33459190 33459378 -248734286 + L2 LINE L2 3124 3312 -1 292 238 133 114 chr1 33459373 33459544 -248734120 + MIR SINE MIR 9 180 -62 * 650 229 20 0 chr1 33459610 33459763 -248733901 - MIR SINE MIR -15 247 92 295 310 21 56 chr1 33459852 33459994 -248733670 + MIR3 SINE MIR 25 161 -47 1043 208 160 14 chr1 33460007 33460232 -248733432 - MER102b DNA MER1_type -1088 340 61 189 0 0 0 chr1 33460232 33460253 -248733411 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 1043 208 160 14 chr1 33460253 33460320 -248733344 - MER102b DNA MER1_type -1367 61 5 615 281 33 67 chr1 33460370 33460640 -248733024 - MIR SINE MIR 0 262 2 2240 81 24 0 chr1 33461002 33461300 -248732364 - AluY SINE Alu -6 305 1 2447 64 0 6 chr1 33461604 33461917 -248731747 - AluY SINE Alu 0 311 1 301 238 20 30 chr1 33461931 33461975 -248731689 - L1ME3 LINE L1 -1 6161 6118 2151 103 0 3 chr1 33461975 33462276 -248731388 - AluSx SINE Alu -12 300 1 301 238 20 30 chr1 33462276 33462332 -248731332 - L1ME3 LINE L1 -44 6118 6062 2199 108 7 0 chr1 33462428 33462733 -248730931 - AluSx SINE Alu -5 307 1 645 265 6 24 chr1 33462998 33463168 -248730496 + MIR SINE MIR 21 187 -75 583 313 6 11 chr1 33463236 33463412 -248730252 - MIR SINE MIR -72 190 16 303 224 0 8 chr1 33463658 33463733 -248729931 + MIR SINE MIR 30 101 -124 1889 246 103 26 chr1 33463938 33464597 -248729067 - L1ME1 LINE L1 -30 6136 5427 506 293 169 24 chr1 33464653 33464943 -248728721 + L3 LINE CR1 1244 1575 -2 2130 133 0 0 chr1 33465788 33466096 -248727568 + AluSx SINE Alu 1 308 -4 1527 278 64 40 chr1 33466150 33466679 -248726985 + MLT1F LTR MaLR 1 542 0 636 249 3 0 chr1 33466865 33467214 -248726450 + CT-rich Low_complexity Low_complexity 1 350 0 343 260 59 91 chr1 33467944 33468163 -248725501 + MLT1K LTR MaLR 28 239 -349 250 336 60 35 chr1 33468161 33468277 -248725387 + MLT1K LTR MaLR 454 572 -16 * 347 189 111 11 chr1 33468298 33468388 -248725276 + MIR3 SINE MIR 88 186 -22 380 288 61 24 chr1 33468779 33468991 -248724673 + L2 LINE L2 2804 3023 -249 630 271 271 10 chr1 33468994 33469385 -248724279 - L2 LINE L2 0 3313 2821 293 322 21 14 chr1 33470135 33470278 -248723386 - L2 LINE L2 -292 3021 2878 21 0 0 0 chr1 33470374 33470395 -248723269 + AT_rich Low_complexity Low_complexity 1 21 0 2267 63 28 0 chr1 33470401 33470688 -248722976 + AluSx SINE Alu 1 295 -17 324 357 76 0 chr1 33471229 33471386 -248722278 - MIR SINE MIR -85 177 9 1703 116 101 0 chr1 33471435 33471712 -248721952 - AluSq SINE Alu -8 305 1 266 200 165 12 chr1 33471716 33471801 -248721863 - MIR3 SINE MIR -46 162 65 * 301 265 45 37 chr1 33471792 33471974 -248721690 + MIR3 SINE MIR 15 202 -60 253 363 105 0 chr1 33472539 33472729 -248720935 - MIR SINE MIR 0 262 53 2278 89 10 0 chr1 33472737 33473041 -248720623 + AluSx SINE Alu 1 307 -5 280 322 92 13 chr1 33473163 33473315 -248720349 - MLT1J LTR MaLR -103 408 245 1806 106 48 4 chr1 33473365 33473668 -248719996 + AluSx SINE Alu 1 315 0 285 270 35 43 chr1 33473971 33474086 -248719578 + MIR SINE MIR 79 192 -70 295 289 10 21 chr1 33474184 33474281 -248719383 + MIR SINE MIR 117 212 -50 351 282 90 32 chr1 33474884 33475040 -248718624 + MIR3 SINE MIR 44 208 0 372 272 11 0 chr1 33476614 33476706 -248716958 - MER74C LTR ERVL -358 102 10 1899 127 3 3 chr1 33477457 33477741 -248715923 + AluSx SINE Alu 21 304 -8 342 282 203 12 chr1 33478075 33478238 -248715426 + MIR SINE MIR 20 213 -49 524 256 78 17 chr1 33478305 33478485 -248715179 + MIR3 SINE MIR 17 207 -1 2026 119 0 3 chr1 33478637 33478949 -248714715 + AluSx SINE Alu 1 311 0 351 0 0 0 chr1 33479570 33479609 -248714055 + (TG)n Simple_repeat Simple_repeat 2 40 0 318 347 92 26 chr1 33479833 33480330 -248713334 + L2 LINE L2 2555 3091 -181 25 0 0 0 chr1 33480814 33480839 -248712825 + GC_rich Low_complexity Low_complexity 1 25 0 189 312 190 47 chr1 33481621 33481874 -248711790 - L2 LINE L2 -1 3271 2983 268 307 45 0 chr1 33482059 33482147 -248711517 + L2 LINE L2 3217 3308 -5 238 327 81 31 chr1 33482209 33482469 -248711195 - L2 LINE L2 -739 2575 2303 2292 57 3 10 chr1 33482556 33482882 -248710782 + AluY SINE Alu 1 311 0 420 206 52 0 chr1 33482946 33483043 -248710621 + MIR SINE MIR 34 135 -73 265 273 10 61 chr1 33483655 33483754 -248709910 + L2 LINE L2 3179 3272 0 754 315 24 4 chr1 33484017 33484044 -248709620 + MIR SINE MIR 7 32 -230 1971 137 3 0 chr1 33484044 33484336 -248709328 + AluSx SINE Alu 1 293 -19 754 315 24 4 chr1 33484336 33484559 -248709105 + MIR SINE MIR 32 262 0 514 233 98 37 chr1 33484695 33484858 -248708806 + MER5B DNA MER1_type 1 173 -5 738 189 61 28 chr1 33484871 33485051 -248708613 + MER5A DNA MER1_type 1 186 -3 197 247 101 45 chr1 33485173 33485262 -248708402 - MIR SINE MIR -44 218 125 219 285 51 21 chr1 33485892 33485986 -248707678 + MIR SINE MIR 20 115 -93 219 313 42 0 chr1 33486523 33486619 -248707045 + L2 LINE L2 2745 2844 -470 382 277 12 64 chr1 33486787 33486990 -248706674 - L1M LINE L1 -769 5405 5212 196 347 31 77 chr1 33487022 33487244 -248706420 + L2 LINE L2 2275 2486 -828 401 298 105 0 chr1 33487244 33487368 -248706296 - L1ME3A LINE L1 -17 6153 6017 402 246 16 8 chr1 33487373 33487501 -248706163 - L1MC4 LINE L1 -1339 6983 1995 352 302 47 0 chr1 33487471 33487557 -248706107 - L1MC4 LINE L1 -1339 6983 6894 * 606 251 68 87 chr1 33487557 33487779 -248705885 - L1ME3A LINE L1 -214 5956 5744 2143 95 17 0 chr1 33487779 33488073 -248705591 - AluSg SINE Alu -11 299 1 606 251 68 87 chr1 33488073 33488264 -248705400 - L1ME3A LINE L1 -426 5744 5551 335 275 46 55 chr1 33488260 33488368 -248705296 - L1ME3A LINE L1 -2695 3451 3344 * 2317 51 40 0 chr1 33488368 33488664 -248705000 - AluY SINE Alu -3 308 1 335 275 46 55 chr1 33488664 33488773 -248704891 - L1ME3A LINE L1 -2802 3344 3236 195 42 0 0 chr1 33488995 33489019 -248704645 + (CA)n Simple_repeat Simple_repeat 1 24 0 402 213 0 0 chr1 33489391 33489471 -248704193 - MIR SINE MIR -117 145 66 375 303 16 25 chr1 33489522 33489644 -248704020 - MIR SINE MIR -133 129 9 218 301 18 9 chr1 33489733 33489846 -248703818 - L2 LINE L2 -255 3017 2904 206 370 10 10 chr1 33490537 33490637 -248703027 + MIR SINE MIR 40 139 -123 619 284 57 39 chr1 33490680 33490909 -248702755 - MIR SINE MIR 0 262 30 843 306 164 14 chr1 33490981 33491906 -248701758 - L2 LINE L2 -93 3220 2150 268 207 11 11 chr1 33491908 33491995 -248701669 + GA-rich Low_complexity Low_complexity 3 89 0 194 287 23 58 chr1 33492659 33492746 -248700918 + MIR SINE MIR 71 154 -108 194 114 0 45 chr1 33492850 33492894 -248700770 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 2037 102 48 0 chr1 33492975 33493270 -248700394 + AluSq SINE Alu 1 309 -4 299 219 0 8 chr1 33493282 33493405 -248700259 + GA-rich Low_complexity Low_complexity 1 122 0 550 220 102 99 chr1 33493557 33493989 -248699675 + L1ME4a LINE L1 5547 5979 -142 388 301 6 43 chr1 33494098 33494261 -248699403 - L3b LINE CR1 -253 1330 1174 1964 122 17 11 chr1 33494486 33494773 -248698891 + AluSx SINE Alu 1 289 -23 203 152 0 0 chr1 33596843 33596876 -248596788 + CT-rich Low_complexity Low_complexity 4 36 0 2345 90 0 6 chr1 33597222 33597533 -248596131 + AluSc SINE Alu 1 309 0 204 333 53 61 chr1 33598378 33598492 -248595172 - L2 LINE L2 0 3313 3201 * 219 375 38 0 chr1 33598488 33598622 -248595042 + L2 LINE L2 2876 3017 -296 500 231 139 29 chr1 33598874 33599047 -248594617 + MIR SINE MIR 1 192 -70 5429 203 33 7 chr1 33599333 33600589 -248593075 - MST-int LTR MaLR -385 1266 1 303 28 0 0 chr1 33600601 33600637 -248593027 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr1 33600776 33600797 -248592867 + AT_rich Low_complexity Low_complexity 1 21 0 4289 244 10 24 chr1 33601407 33602767 -248590897 + L1PA15-16 LINE L1 1710 3050 -3799 425 292 101 34 chr1 33603766 33603975 -248589689 - MIR SINE MIR -32 230 8 21 43 0 0 chr1 33604908 33604931 -248588733 + AT_rich Low_complexity Low_complexity 1 23 0 1522 224 51 23 chr1 33605378 33605812 -248587852 - MLT1C LTR MaLR 0 467 22 300 268 65 8 chr1 33607058 33607181 -248586483 - L1MC/D LINE L1 -1993 5815 5686 8257 61 110 11 chr1 33607230 33608470 -248585194 + L1P LINE L1 1 1362 -4784 207 69 0 0 chr1 33608570 33608599 -248585065 + (A)n Simple_repeat Simple_repeat 1 29 0 894 205 0 0 chr1 33608609 33608780 -248584884 + FRAM SINE Alu 1 165 -11 26 57 0 0 chr1 33609138 33609173 -248584491 + AT_rich Low_complexity Low_complexity 1 35 0 2521 71 0 0 chr1 33609173 33609484 -248584180 - AluY SINE Alu 0 311 1 748 196 6 0 chr1 33609491 33609659 -248584005 - L1MC/D LINE L1 -1094 5052 4884 * 764 235 66 12 chr1 33609652 33609895 -248583769 + L1M4 LINE L1 4562 4817 -1329 3718 155 24 27 chr1 33612362 33613325 -248580339 + L1MA8 LINE L1 5058 6022 -269 2245 102 3 10 chr1 33613330 33613633 -248580031 - AluSx SINE Alu -11 301 1 604 322 20 25 chr1 33613929 33614174 -248579490 + LTR16A LTR ERVL 207 450 0 24 53 0 0 chr1 33614835 33614873 -248578791 + AT_rich Low_complexity Low_complexity 1 38 0 1912 165 95 0 chr1 33615179 33615567 -248578097 + ERVL LTR ERVL 3704 4128 -1636 1354 141 5 0 chr1 33615566 33615779 -248577885 + ERVL LTR ERVL 4974 5187 -577 * 482 229 30 15 chr1 33617103 33617234 -248576430 + MER94 DNA DNA 1 133 -1 3001 159 33 28 chr1 33617632 33617957 -248575707 - MER73 LTR ERVL -19 625 294 315 0 0 0 chr1 33617957 33617992 -248575672 + (TC)n Simple_repeat Simple_repeat 2 36 0 3001 159 33 28 chr1 33617992 33618271 -248575393 - MER73 LTR ERVL -350 294 18 595 85 160 0 chr1 33620375 33620469 -248573195 - THE1C LTR MaLR -266 109 1 7813 21 0 0 chr1 33620493 33621473 -248572191 - L1PA3 LINE L1 0 6155 5176 2793 158 22 10 chr1 33621655 33622162 -248571502 + L1PA15 LINE L1 5652 6164 -1 560 270 38 21 chr1 33622218 33622507 -248571157 + HsTC2 DNA Tc2 1540 1833 -65 181 232 161 18 chr1 33622685 33622741 -248570923 - MER5B DNA MER1_type -109 69 6 336 238 78 93 chr1 33623112 33623305 -248570359 + L1M2 LINE L1 1185 1374 -5475 893 158 27 38 chr1 33623883 33624087 -248569577 + THE1C LTR MaLR 171 375 0 2335 75 16 3 chr1 33624580 33624886 -248568778 + AluY SINE Alu 1 310 -1 56 16 0 0 chr1 33625223 33625286 -248568378 + GC_rich Low_complexity Low_complexity 1 63 0 194 328 0 0 chr1 33625852 33625916 -248567748 - MIR SINE MIR -33 229 166 1031 245 57 48 chr1 33625955 33626392 -248567272 - L1M4 LINE L1 -1024 5122 4682 491 243 51 6 chr1 33626407 33626584 -248567080 + L1M4 LINE L1 5219 5403 -743 21 57 0 0 chr1 33626726 33626761 -248566903 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 33627609 33627639 -248566025 + GC_rich Low_complexity Low_complexity 1 30 0 415 134 37 24 chr1 33629818 33629900 -248563764 + MER67D LTR ERV1 5 87 -427 2479 171 40 6 chr1 33629920 33630393 -248563271 - LTR44 LTR ERV1 0 519 31 386 276 120 126 chr1 33631377 33631852 -248561812 + L1M4c LINE L1 471 1078 -5771 425 307 24 10 chr1 33633108 33633313 -248560351 - L1ME LINE L1 -454 5712 5505 536 310 113 8 chr1 33633316 33633716 -248559948 + L1M4c LINE L1 1677 2118 -4732 485 283 111 51 chr1 33633772 33634125 -248559539 + HsTC2a DNA Tc2 5 378 -366 2247 52 13 0 chr1 33634125 33634431 -248559233 + L1P LINE L1 3758 4067 -2079 1509 211 95 19 chr1 33635448 33635879 -248557785 - L1ME1 LINE L1 -5 6161 5698 8741 38 3 2 chr1 33636012 33637157 -248556507 + L1P LINE L1 2131 3276 -2870 4127 93 5 8 chr1 33637264 33637907 -248555757 + L1P LINE L1 1545 2185 -3961 307 272 79 79 chr1 33637909 33638174 -248555490 + L1M2 LINE L1 862 1126 -5723 1719 172 18 3 chr1 33738345 33738416 -248455248 + Tigger3(Golem) DNA MER2_type 2693 2761 -267 1747 178 0 25 chr1 33738416 33738736 -248454928 - AluJo SINE Alu 0 312 1 1719 172 18 3 chr1 33738736 33738995 -248454669 + Tigger3(Golem) DNA MER2_type 2761 3028 0 210 360 68 62 chr1 33739027 33739188 -248454476 - MIR SINE MIR -16 246 85 2223 86 0 10 chr1 33739833 33740176 -248453488 - AluY SINE Alu 0 311 1 1186 187 26 126 chr1 33740180 33740511 -248453153 - L1MC5 LINE L1 -30 7931 7683 1622 150 0 4 chr1 33740511 33740764 -248452900 + AluJb SINE Alu 59 310 -2 1186 187 26 126 chr1 33740764 33741019 -248452645 - L1MC5 LINE L1 -278 7683 7404 270 337 21 8 chr1 33741161 33741282 -248452382 - MIR SINE MIR -39 169 51 631 241 187 1 chr1 33741899 33742088 -248451576 - MIR SINE MIR 0 262 41 206 269 19 0 chr1 33742175 33742227 -248451437 - MIR SINE MIR -110 152 100 252 308 51 0 chr1 33742489 33742567 -248451097 - MIR3 SINE MIR -49 159 78 200 385 10 0 chr1 33742730 33742826 -248450838 + L2 LINE L2 3138 3234 -38 2071 130 0 16 chr1 33742943 33743251 -248450413 - AluSx SINE Alu -9 303 1 272 382 116 8 chr1 33743267 33743534 -248450130 + L3 LINE CR1 1176 1471 -106 593 276 87 1 chr1 33743695 33743905 -248449759 - MIR SINE MIR -32 230 5 253 41 0 61 chr1 33744288 33744337 -248449327 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 244 211 35 0 chr1 33748323 33748380 -248445284 - MIR SINE MIR -46 216 158 480 224 143 0 chr1 33748394 33748541 -248445123 - MER104 DNA Tc2 -6 174 7 306 220 201 1 chr1 33748548 33748652 -248445012 - MIR SINE MIR -62 146 35 520 245 235 20 chr1 33749432 33749632 -248444032 - MIR SINE MIR -8 254 12 611 264 67 14 chr1 33750514 33750722 -248442942 + MIR SINE MIR 29 247 -15 585 343 33 0 chr1 33750819 33751032 -248442632 - MIR SINE MIR -27 235 16 1704 235 45 34 chr1 33751765 33751873 -248441791 + L1M4 LINE L1 3814 3919 -2227 2240 117 0 0 chr1 33751873 33752180 -248441484 + AluY SINE Alu 3 307 -4 1704 235 45 34 chr1 33752180 33752389 -248441275 + L1M4 LINE L1 3919 4124 -2022 1160 149 36 85 chr1 33752389 33752637 -248441027 - MER46A DNA MER2_type 0 236 1 1704 235 45 34 chr1 33752637 33752968 -248440696 + L1M4 LINE L1 4124 4467 -1679 770 201 127 19 chr1 33752971 33753239 -248440425 + L1M4 LINE L1 4909 5205 -941 1603 118 9 0 chr1 33753242 33753470 -248440194 + AluSg/x SINE Alu 83 312 0 1659 192 0 45 chr1 33753475 33753783 -248439881 + AluJo SINE Alu 1 294 -18 2048 132 7 4 chr1 33754649 33754959 -248438705 - AluSx SINE Alu 0 311 1 779 232 0 12 chr1 33754959 33755127 -248438537 + MER58A DNA MER1_type 44 209 -15 697 231 0 0 chr1 33755973 33756107 -248437557 - MER94 DNA DNA 0 134 1 371 297 153 12 chr1 33756360 33756636 -248437028 + L1ME4a LINE L1 5734 6099 -22 270 136 0 0 chr1 33757163 33757207 -248436457 + (CA)n Simple_repeat Simple_repeat 2 45 0 288 303 139 0 chr1 33757841 33757963 -248435701 - MIR SINE MIR -19 243 105 448 252 32 32 chr1 33758975 33759098 -248434566 + MIR SINE MIR 61 183 -79 313 236 33 39 chr1 33759201 33759346 -248434318 - MIR SINE MIR -66 196 54 546 262 105 6 chr1 33759576 33759748 -248433916 + MIR SINE MIR 16 204 -58 404 266 11 0 chr1 33759817 33759911 -248433753 - MIR3 SINE MIR -21 187 93 264 362 26 20 chr1 33760085 33760237 -248433427 + MIR3 SINE MIR 41 193 -15 431 300 0 0 chr1 33760264 33760404 -248433260 + L1ME4a LINE L1 5690 5829 -292 270 224 153 20 chr1 33760561 33760659 -248433005 + MIR SINE MIR 63 173 -89 376 273 39 8 chr1 33760825 33760953 -248432711 + L1ME4a LINE L1 5985 6116 -5 243 267 170 22 chr1 33761571 33761706 -248431958 + L2 LINE L2 2848 3002 -270 293 246 0 0 chr1 33761723 33761780 -248431884 - L2 LINE L2 -12 3301 3245 241 273 131 0 chr1 33761981 33762080 -248431584 - MIR SINE MIR -70 192 81 587 258 147 20 chr1 33762255 33762453 -248431211 - MIR SINE MIR -20 242 20 203 244 183 17 chr1 33762786 33762901 -248430763 + MIR SINE MIR 36 169 -39 295 282 73 0 chr1 33763123 33763247 -248430417 + L2 LINE L2 3136 3268 -4 262 271 56 19 chr1 33763291 33763398 -248430266 + MIR3 SINE MIR 68 178 -30 749 272 24 5 chr1 33764520 33764739 -248428925 + MIR SINE MIR 5 227 -35 250 300 127 9 chr1 33764733 33764843 -248428821 + MIR SINE MIR 66 188 -74 * 3485 168 41 28 chr1 33765139 33765499 -248428165 + L1MB8 LINE L1 5461 5815 -363 2144 113 14 0 chr1 33765499 33765791 -248427873 + AluSq SINE Alu 1 296 -17 3485 168 41 28 chr1 33765791 33766133 -248427531 + L1MB8 LINE L1 5815 6172 -6 313 189 123 58 chr1 33766156 33766288 -248427376 - MIR SINE MIR -80 128 2 2007 102 88 0 chr1 33767066 33767349 -248426315 + AluSg SINE Alu 1 308 -2 228 218 40 89 chr1 33767908 33768009 -248425655 - MIR SINE MIR -62 146 51 554 160 11 17 chr1 33768726 33768907 -248424757 + (CA)n Simple_repeat Simple_repeat 1 180 0 438 222 42 21 chr1 33768909 33769053 -248424611 + (CCCA)n Simple_repeat Simple_repeat 1 147 0 491 197 6 0 chr1 33769054 33769232 -248424432 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 196 0 0 chr1 33769243 33769350 -248424314 + (CA)n Simple_repeat Simple_repeat 1 107 0 564 273 113 43 chr1 33770306 33770676 -248422988 + L2 LINE L2 2912 3307 -6 558 239 72 0 chr1 33771000 33771138 -248422526 + MIR SINE MIR 94 241 -21 350 300 54 0 chr1 33771193 33771323 -248422341 + MIR SINE MIR 108 244 -18 192 182 0 0 chr1 33771673 33771717 -248421947 + (CA)n Simple_repeat Simple_repeat 1 44 0 461 286 101 28 chr1 33771812 33771990 -248421674 - MIR SINE MIR -19 243 53 229 311 27 0 chr1 33772051 33772125 -248421539 - MIR SINE MIR -110 152 77 228 130 130 19 chr1 33772177 33772231 -248421433 - MIR SINE MIR -98 164 105 232 128 0 64 chr1 33772268 33772315 -248421349 + (CCCCCA)n Simple_repeat Simple_repeat 5 48 0 305 234 78 0 chr1 33772422 33772499 -248421165 + MIR SINE MIR 67 149 -113 262 227 8 172 chr1 33772497 33772568 -248421096 - MIR SINE MIR -3 259 217 * 2220 99 0 3 chr1 33772568 33772860 -248420804 - AluSc SINE Alu -14 295 5 262 227 8 172 chr1 33772860 33772916 -248420748 - MIR SINE MIR -45 217 153 443 289 36 36 chr1 33773606 33773772 -248419892 - MIR SINE MIR -89 173 8 197 163 143 20 chr1 33774132 33774181 -248419483 + L2 LINE L2 3201 3255 -58 1969 146 0 3 chr1 33776878 33777172 -248416492 + AluSx SINE Alu 1 293 -19 230 264 46 46 chr1 33777380 33777467 -248416197 - MIR3 SINE MIR -9 199 113 411 256 122 83 chr1 33777573 33777920 -248415744 + L1M4 LINE L1 2908 4500 -1646 636 220 55 11 chr1 33777932 33778114 -248415550 - Tigger5 DNA MER2_type -1 2322 2133 35 54 0 14 chr1 33778114 33778136 -248415528 + AT_rich Low_complexity Low_complexity 1 22 -51 2389 91 0 0 chr1 33778136 33778432 -248415232 + AluSg SINE Alu 1 296 -14 35 54 0 14 chr1 33778432 33778483 -248415181 + AT_rich Low_complexity Low_complexity 22 73 0 818 183 28 0 chr1 33778553 33778695 -248414969 + FRAM SINE Alu 12 157 -19 316 344 149 18 chr1 33778765 33778986 -248414678 - MIR SINE MIR -2 260 11 310 311 66 16 chr1 33779048 33779170 -248414494 - MIR SINE MIR -133 129 2 1728 134 108 14 chr1 33779651 33779928 -248413736 - AluJb SINE Alu -9 303 1 1787 183 33 0 chr1 33780258 33780558 -248413106 + AluJb SINE Alu 1 310 -2 1158 101 7 0 chr1 33782568 33782717 -248410947 + AluSg/x SINE Alu 136 285 -27 549 122 0 0 chr1 33782717 33782791 -248410873 - AluS SINE Alu -235 75 2 464 184 53 0 chr1 33782819 33782933 -248410731 + L1ME LINE L1 850 969 -5101 312 280 70 70 chr1 33783108 33783322 -248410342 - L2 LINE L2 -155 3117 2904 1785 161 0 4 chr1 33783390 33783657 -248410007 + AluSx SINE Alu 30 295 -17 571 303 9 1 chr1 33783846 33784006 -248409658 + MIR3 SINE MIR 3 166 -42 259 253 40 13 chr1 33784041 33784116 -248409548 + MIR3 SINE MIR 117 193 -15 901 259 63 0 chr1 33784373 33784578 -248409086 + MIR SINE MIR 28 245 -17 187 315 0 0 chr1 33784769 33784823 -248408841 + L2 LINE L2 3218 3271 -1 2283 120 0 0 chr1 33785692 33785993 -248407671 - AluSg SINE Alu -6 304 4 2132 101 14 0 chr1 33785995 33786281 -248407383 - AluSg1 SINE Alu -19 290 1 283 245 0 0 chr1 33786481 33786534 -248407130 + L2 LINE L2 3214 3266 -6 422 167 13 0 chr1 33786612 33786690 -248406974 - LTR5 LTR ERVK -889 80 2 680 303 25 0 chr1 33786724 33786922 -248406742 + MIR SINE MIR 59 261 -1 201 328 52 0 chr1 33786942 33787000 -248406664 + L2 LINE L2 3119 3179 -93 219 247 143 13 chr1 33787687 33787764 -248405900 + MIR SINE MIR 60 148 -60 593 168 133 52 chr1 33788478 33788651 -248405013 - MIR SINE MIR -56 206 20 280 241 90 45 chr1 33789557 33789690 -248403974 - L2 LINE L2 0 3272 3134 347 238 16 49 chr1 33790360 33790482 -248403182 - MIR3 SINE MIR -86 122 5 * 791 173 16 103 chr1 33790451 33790553 -248403111 + MIR SINE MIR 46 126 -136 1930 143 14 3 chr1 33790553 33790846 -248402818 + AluSx SINE Alu 1 296 -16 791 173 16 103 chr1 33790846 33790928 -248402736 + MIR SINE MIR 126 214 -48 205 191 0 0 chr1 33791087 33791129 -248402535 + T-rich Low_complexity Low_complexity 1 42 0 1816 174 0 20 chr1 33793083 33793426 -248400238 + AluJo SINE Alu 1 312 0 2060 90 7 41 chr1 33793476 33793807 -248399857 + AluY SINE Alu 1 321 0 265 342 62 20 chr1 33794168 33794394 -248399270 - MIR SINE MIR -10 252 20 2381 115 0 0 chr1 33794554 33794866 -248398798 - AluSx SINE Alu 0 312 1 415 280 7 21 chr1 33795094 33795237 -248398427 + MLT1L LTR MaLR 447 587 -28 267 242 101 20 chr1 33796144 33796243 -248397421 + MIR SINE MIR 23 129 -133 206 333 40 13 chr1 33796980 33797055 -248396609 - MIR3 SINE MIR -129 79 3 291 324 56 9 chr1 33797473 33797581 -248396083 + MIR3 SINE MIR 46 158 -50 406 222 103 16 chr1 33797742 33797868 -248395796 + MIR SINE MIR 45 181 -81 2291 104 0 10 chr1 33798481 33798778 -248394886 + AluSx SINE Alu 6 299 -13 458 202 75 28 chr1 33799221 33799380 -248394284 + MER31-int LTR ERV1 1044 1392 -394 2173 103 7 14 chr1 33799408 33799698 -248393966 - AluSx SINE Alu -24 288 1 256 143 0 43 chr1 33799698 33799768 -248393896 + MER31-int LTR ERV1 1137 1203 -3733 389 272 0 22 chr1 33799773 33799865 -248393799 + L1MC4 LINE L1 6614 6703 -1339 971 211 55 23 chr1 33799972 33800289 -248393375 - MER31-int LTR ERV1 -547 5399 4148 1450 197 96 100 chr1 33800292 33800586 -248393078 - MER31-int LTR ERV1 -1170 5161 4867 2278 76 7 40 chr1 33800586 33800890 -248392774 - AluY SINE Alu -17 294 1 1450 197 96 100 chr1 33800890 33801801 -248391863 - MER31-int LTR ERV1 -1464 4867 3954 1678 110 165 4 chr1 33801801 33802055 -248391609 + AluSx SINE Alu 1 295 -17 1450 197 96 100 chr1 33802055 33802115 -248391549 - MER31-int LTR ERV1 -2377 3954 2480 1479 208 13 36 chr1 33802537 33802845 -248390819 - AluJb SINE Alu -11 301 1 24 0 0 0 chr1 33802845 33802869 -248390795 + AT_rich Low_complexity Low_complexity 1 24 0 1581 160 0 11 chr1 33802869 33803144 -248390520 - AluSx SINE Alu 0 312 41 762 154 62 46 chr1 33803481 33803611 -248390053 - FLAM_C SINE Alu -10 133 2 22 0 0 0 chr1 33803614 33803636 -248390028 + AT_rich Low_complexity Low_complexity 1 22 0 408 252 233 0 chr1 33803947 33804106 -248389558 - MIR SINE MIR 0 262 67 1883 134 6 22 chr1 33804487 33804801 -248388863 - AluSx SINE Alu -1 311 3 1418 256 76 17 chr1 33806503 33807079 -248386585 + L1M4 LINE L1 3362 3896 -2250 196 320 174 12 chr1 33808314 33808486 -248385178 - MIR SINE MIR -8 254 55 199 192 13 90 chr1 33810051 33810129 -248383535 - L2 LINE L2 -1259 2055 1984 251 273 7 60 chr1 33810595 33810745 -248382919 + GA-rich Low_complexity Low_complexity 1 142 0 900 130 0 0 chr1 33811107 33811238 -248382426 - AluJb SINE Alu -181 131 1 2058 77 0 31 chr1 33811258 33811545 -248382119 + AluY SINE Alu 1 278 -33 198 71 0 0 chr1 33811546 33811574 -248382090 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 256 115 0 0 chr1 33811589 33811641 -248382023 + L1MA2 LINE L1 6110 6161 -143 2303 72 0 10 chr1 33811875 33812179 -248381485 + AluY SINE Alu 1 301 -10 924 161 19 0 chr1 33812195 33812356 -248381308 + AluJb SINE Alu 140 303 -9 200 284 80 11 chr1 33812637 33812725 -248380939 - MIR3 SINE MIR -54 154 61 248 273 15 0 chr1 33813176 33813242 -248380422 + C-rich Low_complexity Low_complexity 5 71 0 566 250 85 17 chr1 33813429 33813605 -248380059 + MIR3 SINE MIR 7 194 -14 1532 156 6 68 chr1 33813861 33814182 -248379482 - AluJb SINE Alu -11 301 1 514 221 221 0 chr1 33814245 33814376 -248379288 + MER69A DNA AcHobo 1 160 -17 210 288 100 0 chr1 33814675 33814755 -248378909 + MIR SINE MIR 27 114 -94 522 257 29 0 chr1 33815358 33815498 -248378166 + MIR SINE MIR 1 144 -118 330 302 0 0 chr1 33815607 33815713 -248377951 + MIR SINE MIR 155 260 -2 183 100 0 0 chr1 33816593 33816623 -248377041 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 26 0 0 0 chr1 33817129 33817155 -248376509 + AT_rich Low_complexity Low_complexity 1 26 0 189 243 186 0 chr1 33819196 33819266 -248374398 + MIR SINE MIR 157 239 -23 530 256 124 34 chr1 33819272 33819455 -248374209 - L2 LINE L2 -10 3303 3093 2103 103 3 28 chr1 33819455 33819776 -248373888 + AluSq SINE Alu 1 313 0 530 256 124 34 chr1 33819776 33819826 -248373838 - L2 LINE L2 -220 3093 3049 1428 192 14 11 chr1 33820116 33820397 -248373267 - AluJb SINE Alu -30 282 1 208 271 59 24 chr1 33821893 33821978 -248371686 - MIR SINE MIR -109 153 66 1750 159 3 0 chr1 33822408 33822704 -248370960 + AluSx SINE Alu 2 298 -14 325 336 31 23 chr1 33822830 33822958 -248370706 + LTR26-int LTR ERV1 5771 5899 -432 445 178 26 125 chr1 33822985 33823137 -248370527 + LTR26-int LTR ERV1 4612 4748 -188 2216 90 0 10 chr1 33823259 33823558 -248370106 + AluSx SINE Alu 5 300 -12 990 142 0 25 chr1 33823604 33823766 -248369898 - AluJb SINE Alu -22 290 133 214 198 40 119 chr1 33823863 33823964 -248369700 + L2 LINE L2 2125 2217 -1097 1448 171 7 14 chr1 33823967 33824242 -248369422 + AluJo SINE Alu 17 289 -23 3515 143 35 19 chr1 33824497 33825090 -248368574 + LTR26 LTR ERV1 1 603 0 2058 90 17 14 chr1 33825122 33825412 -248368252 + AluSq SINE Alu 1 291 -22 22 0 0 0 chr1 33825575 33825597 -248368067 + AT_rich Low_complexity Low_complexity 1 22 0 2197 92 3 0 chr1 33826132 33826425 -248367239 + AluSg SINE Alu 1 294 -16 1425 167 35 42 chr1 33827667 33827978 -248365686 - AluJb SINE Alu -3 309 1 1837 105 3 25 chr1 33828145 33828430 -248365234 + AluSq SINE Alu 23 301 -12 238 116 0 23 chr1 33829274 33829311 -248364353 + MIR SINE MIR 113 149 -108 1296 155 140 63 chr1 33829311 33829646 -248364018 - MER46B DNA MER2_type 0 236 1 320 254 184 70 chr1 33830181 33830286 -248363378 + MIR SINE MIR 5 97 -165 1965 134 0 13 chr1 33830286 33830593 -248363071 + AluSx SINE Alu 1 303 -9 320 254 184 70 chr1 33830593 33830715 -248362949 + MIR SINE MIR 97 258 -4 1373 205 13 28 chr1 33831140 33831457 -248362207 + AluJo SINE Alu 1 312 0 222 197 61 61 chr1 33831760 33831826 -248361838 - MER5B DNA MER1_type -2 176 111 242 319 62 18 chr1 33832190 33832303 -248361361 - L2 LINE L2 -963 2351 2234 1025 120 18 6 chr1 33832564 33832731 -248360933 + AluSx SINE Alu 38 206 -106 294 270 38 129 chr1 33833315 33833812 -248359852 - MLT1J LTR MaLR -20 491 40 516 289 42 0 chr1 33833835 33833977 -248359687 + MIR3 SINE MIR 41 188 -20 * 666 251 45 0 chr1 33833974 33834153 -248359511 + MIR SINE MIR 42 228 -34 543 186 0 62 chr1 33834650 33834763 -248358901 - MIR SINE MIR -63 145 40 595 287 86 29 chr1 33835067 33835210 -248358454 + MIR SINE MIR 2 166 -96 1746 202 32 45 chr1 33835210 33835681 -248357983 - MLT1C LTR MaLR -2 465 1 595 287 86 29 chr1 33835681 33835781 -248357883 + MIR SINE MIR 166 259 -3 1427 135 0 0 chr1 33835910 33836118 -248357546 - AluJb SINE Alu -19 293 86 803 283 69 0 chr1 33836118 33836351 -248357313 - MIR SINE MIR -3 259 11 2304 77 3 7 chr1 33836556 33836854 -248356810 - AluSp SINE Alu -16 297 1 681 257 83 32 chr1 33837487 33837705 -248355959 - MIR SINE MIR -2 260 32 210 180 0 79 chr1 33838060 33838116 -248355548 - MIR SINE MIR -111 151 104 318 255 151 9 chr1 33838227 33838333 -248355331 + MIR SINE MIR 47 167 -95 * 472 202 0 0 chr1 33838331 33838415 -248355249 - L2 LINE L2 0 3313 3230 2427 51 3 0 chr1 33838529 33838821 -248354843 + AluSp SINE Alu 3 295 -18 222 176 0 0 chr1 33839191 33839242 -248354422 + (TG)n Simple_repeat Simple_repeat 1 51 0 341 343 6 0 chr1 33839395 33839570 -248354094 + (CA)n Simple_repeat Simple_repeat 1 176 0 1142 188 0 27 chr1 33839849 33840073 -248353591 + AluJo SINE Alu 1 218 -94 259 385 6 6 chr1 33840646 33840807 -248352857 + L2 LINE L2 2617 2777 -537 591 242 127 41 chr1 33840818 33841255 -248352409 - MLT1J LTR MaLR -2 509 1 287 285 126 76 chr1 33841280 33841360 -248352304 + L2 LINE L2 2934 3009 -263 2235 89 3 0 chr1 33841360 33841652 -248352012 + AluSx SINE Alu 1 293 -19 287 285 126 76 chr1 33841652 33841834 -248351830 + L2 LINE L2 3009 3209 -63 349 132 29 59 chr1 33841955 33842023 -248351641 - L1MC4 LINE L1 -1363 6679 6614 547 234 8 8 chr1 33842524 33842648 -248351016 - L2 LINE L2 0 3313 3190 224 30 30 0 chr1 33843189 33843222 -248350442 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 288 229 0 29 chr1 33843699 33843769 -248349895 - L2 LINE L2 0 3313 3246 1406 148 50 64 chr1 33843874 33844172 -248349492 - AluJo SINE Alu -16 296 3 874 216 32 28 chr1 33845266 33845484 -248348180 + MIR SINE MIR 6 224 -38 2111 100 10 0 chr1 33845642 33845941 -248347723 + AluSp SINE Alu 1 302 -11 221 189 200 32 chr1 33846193 33846232 -248347432 + MIR SINE MIR 75 106 -156 2030 119 0 0 chr1 33846232 33846526 -248347138 - AluSx SINE Alu -18 294 1 221 189 200 32 chr1 33846526 33846581 -248347083 + MIR SINE MIR 106 185 -77 2375 74 0 0 chr1 33847467 33847766 -248345898 - AluSg SINE Alu -11 299 1 902 209 19 10 chr1 33848023 33848229 -248345435 + Charlie4 DNA MER1_type 47 254 -1707 422 188 159 40 chr1 33848247 33848423 -248345241 + Charlie4 DNA MER1_type 1750 1946 -15 2283 97 3 0 chr1 33849561 33849871 -248343793 + AluSq SINE Alu 1 311 -2 191 297 0 0 chr1 33850527 33850564 -248343100 - L2 LINE L2 -91 3181 3145 21 0 0 0 chr1 33851983 33852004 -248341660 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 33853610 33853632 -248340032 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 33853738 33853759 -248339905 + AT_rich Low_complexity Low_complexity 1 21 0 1927 152 10 7 chr1 33854060 33854362 -248339302 + AluJb SINE Alu 1 303 -9 186 289 96 58 chr1 33854798 33854902 -248338762 + MIR SINE MIR 93 200 -62 205 209 0 23 chr1 33855747 33855790 -248337874 + CT-rich Low_complexity Low_complexity 3 44 0 201 273 127 0 chr1 33857136 33857191 -248336473 + L2 LINE L2 3235 3296 -17 1830 116 60 0 chr1 33857503 33857770 -248335894 + AluSx SINE Alu 1 283 -29 636 81 0 0 chr1 33857781 33857868 -248335796 + (CAGA)n Simple_repeat Simple_repeat 2 88 0 1009 228 173 64 chr1 33857884 33858370 -248335294 - L1ME LINE L1 -5239 831 293 685 236 26 41 chr1 33858412 33858607 -248335057 - L1ME LINE L1 -5861 209 18 892 172 38 13 chr1 33858614 33858771 -248334893 + FRAM SINE Alu 1 159 -17 1798 139 14 11 chr1 33859099 33859386 -248334278 + AluJb SINE Alu 1 288 -24 505 217 0 0 chr1 33859673 33859765 -248333899 - AluSg/x SINE Alu -84 228 137 418 274 26 0 chr1 33859994 33860111 -248333553 + L1ME3A LINE L1 6046 6165 -5 1288 158 8 37 chr1 33860251 33860492 -248333172 + AluJo SINE Alu 1 234 -78 235 111 28 0 chr1 33860680 33860716 -248332948 + AluJo SINE Alu 242 278 -24 1658 210 3 0 chr1 33860886 33861196 -248332468 - AluJo SINE Alu -1 311 1 2558 77 0 0 chr1 33861222 33861533 -248332131 + AluSx SINE Alu 2 312 0 256 325 94 8 chr1 33861574 33861691 -248331973 + MIR SINE MIR 58 184 -78 255 299 108 60 chr1 33861874 33862041 -248331623 - MER5B DNA MER1_type 0 178 4 2444 68 10 3 chr1 33862800 33863107 -248330557 + AluY SINE Alu 1 309 -2 898 134 18 64 chr1 33863108 33863279 -248330385 + AluSc SINE Alu 129 291 -18 349 245 39 29 chr1 33863465 33863567 -248330097 + MIR SINE MIR 108 210 -52 545 246 162 7 chr1 33863766 33863908 -248329756 - MER5A DNA MER1_type 0 189 26 2156 116 0 0 chr1 33865370 33865655 -248328009 + AluSq SINE Alu 1 285 -28 297 0 0 0 chr1 33867687 33867720 -248325944 + (GA)n Simple_repeat Simple_repeat 2 34 0 1992 118 0 36 chr1 33870787 33871093 -248322571 + AluY SINE Alu 1 295 -16 2074 139 0 7 chr1 33871379 33871689 -248321975 + AluSx SINE Alu 1 308 -4 255 47 256 0 chr1 33871975 33872018 -248321646 - MADE1 DNA Mariner 0 80 27 557 261 78 57 chr1 33872153 33872452 -248321212 + MLT1E LTR MaLR 1 304 -263 734 184 14 149 chr1 33872523 33872782 -248320882 + MLT1E LTR MaLR 317 609 60 1297 199 66 26 chr1 33872782 33873053 -248320611 + AluJo SINE Alu 1 282 -30 360 0 0 0 chr1 33873060 33873100 -248320564 + (CA)n Simple_repeat Simple_repeat 2 41 0 734 184 14 149 chr1 33873100 33873156 -248320508 + MLT1E LTR MaLR 482 544 -5 198 0 0 0 chr1 33874448 33874470 -248319194 + (A)n Simple_repeat Simple_repeat 1 22 0 1756 164 16 13 chr1 33875915 33876219 -248317445 + AluJb SINE Alu 1 305 -7 744 168 44 0 chr1 33876258 33876371 -248317293 + FLAM_C SINE Alu 1 118 -15 25 51 0 0 chr1 33876371 33876410 -248317254 + AT_rich Low_complexity Low_complexity 1 39 0 2136 97 0 4 chr1 33876421 33876700 -248316964 + AluSx SINE Alu 21 298 -14 731 165 50 8 chr1 33876748 33876869 -248316795 + FLAM_C SINE Alu 2 127 -16 26 50 0 0 chr1 33876937 33876977 -248316687 + AT_rich Low_complexity Low_complexity 1 40 0 2504 82 0 0 chr1 33877232 33877536 -248316128 - AluY SINE Alu -7 304 1 2478 83 3 0 chr1 33877556 33877868 -248315796 - AluSp SINE Alu 0 313 1 1264 178 39 13 chr1 33877961 33878191 -248315473 + MER46A DNA MER2_type 1 236 0 21 36 0 0 chr1 33878271 33878299 -248315365 + AT_rich Low_complexity Low_complexity 1 28 0 1399 88 101 42 chr1 33879314 33879531 -248314133 - MER30 DNA MER1_type 0 230 1 257 333 45 23 chr1 33879730 33879862 -248313802 - L2 LINE L2 -585 2729 2595 2099 130 7 0 chr1 33879966 33880266 -248313398 + AluSx SINE Alu 3 304 -8 1974 129 19 19 chr1 33880275 33880585 -248313079 + AluSx SINE Alu 1 310 -2 1853 178 3 0 chr1 33880966 33881270 -248312394 + AluSx SINE Alu 1 305 -7 3158 130 35 16 chr1 33881808 33882293 -248311371 - L1PA16 LINE L1 -16 6150 5657 2112 117 0 17 chr1 33884784 33885083 -248308581 + AluSx SINE Alu 1 294 -18 2236 92 17 7 chr1 33885546 33885841 -248307823 + AluSc SINE Alu 1 298 -11 185 356 35 11 chr1 33885990 33886077 -248307587 - MIR3 SINE MIR -15 193 105 2381 98 0 13 chr1 33887434 33887750 -248305914 - AluSx SINE Alu 0 312 1 1236 126 16 11 chr1 33887888 33888078 -248305586 + AluSg/x SINE Alu 119 309 -1 407 277 214 10 chr1 33888412 33888618 -248305046 + MIR SINE MIR 15 262 0 22 0 0 0 chr1 33888929 33888951 -248304713 + AT_rich Low_complexity Low_complexity 1 22 0 796 154 62 46 chr1 33888954 33889084 -248304580 + FLAM_C SINE Alu 2 133 -10 1192 160 38 9 chr1 33891513 33891725 -248301939 + AluJb SINE Alu 85 302 -10 2226 94 27 3 chr1 33891725 33892023 -248301641 + AluSx SINE Alu 1 305 -7 1130 163 19 83 chr1 33892249 33892513 -248301151 + AluJb SINE Alu 49 295 -17 237 239 157 6 chr1 33893188 33893322 -248300342 - MIR SINE MIR -62 200 44 262 96 19 19 chr1 33893677 33893729 -248299935 + (TC)n Simple_repeat Simple_repeat 2 53 0 370 97 65 0 chr1 33894294 33894356 -248299308 - Alu SINE Alu -4 296 231 22 0 0 0 chr1 33894356 33894378 -248299286 + AT_rich Low_complexity Low_complexity 1 22 0 882 151 0 78 chr1 33894463 33894615 -248299049 + AluJb SINE Alu 148 286 -26 1654 101 0 0 chr1 33894615 33894822 -248298842 + AluSx SINE Alu 1 207 -105 882 151 0 78 chr1 33894822 33894848 -248298816 + AluJb SINE Alu 286 312 0 1049 174 12 0 chr1 33894998 33895165 -248298499 - AluSg/x SINE Alu -12 300 132 1792 110 99 10 chr1 33895165 33895457 -248298207 - AluYb8 SINE Alu 0 318 1 1583 154 92 11 chr1 33895459 33895731 -248297933 - AluJo SINE Alu -18 294 1 897 144 0 7 chr1 33896161 33896300 -248297364 + AluSq/x SINE Alu 14 151 -162 1459 173 40 4 chr1 33896950 33897199 -248296465 + AluSx SINE Alu 42 299 -13 2363 83 3 0 chr1 33897265 33897566 -248296098 + AluSp SINE Alu 5 306 -7 309 344 86 16 chr1 33897772 33897869 -248295795 - MIR SINE MIR -113 149 39 2140 93 28 7 chr1 33897869 33898160 -248295504 - AluSg SINE Alu -13 297 1 309 344 86 16 chr1 33898160 33898190 -248295474 - MIR SINE MIR -223 39 13 645 114 16 65 chr1 33898229 33898352 -248295312 + FLAM_C SINE Alu 11 127 -16 1802 122 68 4 chr1 33899234 33899512 -248294152 + AluSx SINE Alu 1 296 -16 2186 68 0 89 chr1 33899560 33899885 -248293779 + AluY SINE Alu 1 296 -15 208 234 31 62 chr1 33900316 33900380 -248293284 + L2 LINE L2 3204 3265 -7 629 261 134 0 chr1 33900505 33900743 -248292921 + L1ME4a LINE L1 5559 5828 -293 243 0 0 0 chr1 33900750 33900777 -248292887 + (TA)n Simple_repeat Simple_repeat 1 27 0 1065 219 13 9 chr1 33900777 33901001 -248292663 - AluJb SINE Alu -1 311 87 2287 90 0 17 chr1 33901014 33901314 -248292350 - AluY SINE Alu -16 295 1 1967 124 7 36 chr1 33901410 33901716 -248291948 + AluSx SINE Alu 1 297 -15 273 128 0 0 chr1 33901750 33901797 -248291867 + AluSp/q SINE Alu 255 301 -2 210 286 43 29 chr1 33901807 33901877 -248291787 - MER5A DNA MER1_type -50 139 69 747 150 0 53 chr1 33901878 33902011 -248291653 - FLAM_C SINE Alu -7 126 1 184 327 45 58 chr1 33902126 33902282 -248291382 - L2 LINE L2 -184 3088 2935 505 188 60 34 chr1 33902421 33902538 -248291126 + FLAM_A SINE Alu 1 120 -13 43 20 0 0 chr1 33902539 33902589 -248291075 + AT_rich Low_complexity Low_complexity 1 50 0 202 329 21 36 chr1 33902675 33902815 -248290849 - L2 LINE L2 -578 2736 2599 790 165 0 24 chr1 33903041 33903168 -248290496 - FLAM_C SINE Alu -9 124 1 2230 194 36 2 chr1 33903242 33903654 -248290010 + MSTB LTR MaLR 1 426 0 2203 116 0 3 chr1 33903814 33904146 -248289518 + AluSx SINE Alu 1 312 0 259 256 68 26 chr1 33904415 33904532 -248289132 - L1ME4a LINE L1 -44 6077 5956 1243 146 203 29 chr1 33904565 33904811 -248288853 - AluSx SINE Alu -13 289 1 1696 107 7 59 chr1 33904999 33905289 -248288375 - AluSq SINE Alu -16 297 23 1745 145 122 33 chr1 33905730 33905911 -248287753 + L1MB8 LINE L1 5643 5807 -371 2265 66 7 3 chr1 33905911 33906213 -248287451 + AluY SINE Alu 1 303 -8 1745 145 122 33 chr1 33906213 33906459 -248287205 + L1MB8 LINE L1 5807 6108 -70 556 110 0 12 chr1 33906478 33906560 -248287104 - AluY SINE Alu -22 289 209 1919 120 33 0 chr1 33906589 33906889 -248286775 - AluSg SINE Alu 0 310 1 1809 114 24 24 chr1 33906935 33907224 -248286440 - AluSx SINE Alu -17 295 7 727 160 25 0 chr1 33907259 33907378 -248286286 + FLAM_C SINE Alu 2 123 -20 28 48 0 0 chr1 33907380 33907422 -248286242 + AT_rich Low_complexity Low_complexity 1 42 0 2072 125 0 10 chr1 33907591 33907895 -248285769 + AluSx SINE Alu 1 301 -11 2153 100 3 0 chr1 33907896 33908196 -248285468 + AluSp SINE Alu 1 301 -12 1675 117 135 8 chr1 33908295 33908561 -248285103 - AluSg SINE Alu 0 300 1 1789 146 7 4 chr1 33908707 33908987 -248284677 + AluSg SINE Alu 7 287 -23 1820 125 7 7 chr1 33909452 33909740 -248283924 + AluSq SINE Alu 1 288 -25 2242 88 10 0 chr1 33909750 33910058 -248283606 + AluY SINE Alu 1 311 0 2330 87 0 0 chr1 33910254 33910565 -248283099 - AluY SINE Alu 0 311 1 2113 110 10 0 chr1 33910715 33911014 -248282650 + AluSx SINE Alu 1 302 -10 2136 114 0 0 chr1 33911025 33911322 -248282342 + AluSx SINE Alu 1 297 -15 898 180 6 17 chr1 33911322 33911483 -248282181 + AluSq SINE Alu 135 295 -18 2333 71 0 3 chr1 33911615 33911910 -248281754 - AluSx SINE Alu -6 306 13 1513 174 50 0 chr1 33911995 33912277 -248281387 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr1 33912910 33912945 -248280719 + AT_rich Low_complexity Low_complexity 1 35 0 2242 90 3 0 chr1 33913094 33913394 -248280270 - AluSp SINE Alu -12 301 1 2384 68 0 0 chr1 33913807 33914103 -248279561 - AluY SINE Alu -15 296 1 1130 150 173 41 chr1 33914191 33914457 -248279207 - AluJo SINE Alu 0 302 2 2060 109 0 16 chr1 33914492 33914795 -248278869 - AluSx SINE Alu -14 298 1 2052 85 39 0 chr1 33914809 33915091 -248278573 - AluSg SINE Alu -17 293 1 821 129 30 8 chr1 33915559 33915691 -248277973 + AluJo SINE Alu 2 136 -176 1625 153 4 8 chr1 33915691 33915952 -248277712 + AluSx SINE Alu 21 280 -32 207 0 0 0 chr1 33915954 33915977 -248277687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 217 289 24 0 chr1 33915984 33916067 -248277597 - MIR SINE MIR -56 206 122 817 139 134 70 chr1 33916067 33916254 -248277410 + AluJ SINE Alu 1 199 -113 2408 188 30 13 chr1 33916263 33916778 -248276886 - LTR27 LTR ERV1 -11 490 2 501 159 35 44 chr1 33916780 33916893 -248276771 + AluJ SINE Alu 198 309 -3 1510 181 0 7 chr1 33918036 33918342 -248275322 - AluJb SINE Alu 0 312 29 1533 152 76 35 chr1 33918367 33918656 -248275008 - AluJo SINE Alu 0 302 2 216 0 0 0 chr1 33918659 33918683 -248274981 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1755 120 11 33 chr1 33918685 33918833 -248274831 - AluSx SINE Alu -32 280 130 1859 108 52 3 chr1 33918833 33919119 -248274545 - AluSx SINE Alu -12 300 1 2137 92 17 0 chr1 33919119 33919414 -248274250 - AluSc SINE Alu -9 300 1 1755 120 11 33 chr1 33919414 33919538 -248274126 - AluSx SINE Alu -180 132 13 314 309 92 0 chr1 33919564 33919716 -248273948 + L1M4c LINE L1 2270 2435 -3949 1184 112 6 0 chr1 33919822 33919992 -248273672 - AluY SINE Alu -126 185 15 763 197 0 0 chr1 33920008 33920140 -248273524 - FLAM_C SINE Alu 0 133 2 439 148 111 74 chr1 33920142 33920250 -248273414 - AluJo SINE Alu -167 145 34 798 134 8 30 chr1 33920367 33920501 -248273163 - FLAM_C SINE Alu -1 132 2 2073 127 0 0 chr1 33920538 33920872 -248272792 + AluSx SINE Alu 1 312 0 338 223 132 8 chr1 33920873 33920994 -248272670 + L1M4c LINE L1 2699 2834 -3548 1495 185 45 0 chr1 33921006 33921293 -248272371 + AluJo SINE Alu 9 308 -4 2258 82 13 0 chr1 33921295 33921600 -248272064 + AluY SINE Alu 1 309 -2 253 257 72 57 chr1 33921626 33921678 -248271986 + L1M4c LINE L1 3095 3145 -3237 2232 91 3 0 chr1 33921678 33921975 -248271689 + AluSx SINE Alu 1 298 -14 253 257 72 57 chr1 33921975 33922187 -248271477 + L1M4c LINE L1 3145 3363 -3019 508 148 0 34 chr1 33922430 33922518 -248271146 + AluJ/FLAM SINE Alu 2 86 -226 518 224 43 0 chr1 33922518 33922634 -248271030 - AluSg/x SINE Alu -109 203 83 502 161 21 21 chr1 33922638 33922773 -248270891 - AluJb SINE Alu 0 325 191 468 51 0 0 chr1 33922791 33922850 -248270814 + (TA)n Simple_repeat Simple_repeat 1 59 0 2010 139 3 3 chr1 33922853 33923163 -248270501 - AluSg SINE Alu 0 310 1 681 223 0 0 chr1 33923298 33923437 -248270227 + AluJb SINE Alu 137 275 -37 2089 92 0 24 chr1 33923449 33923742 -248269922 - AluSx SINE Alu -12 300 15 24 32 0 0 chr1 33923742 33923773 -248269891 + AT_rich Low_complexity Low_complexity 1 31 0 451 299 48 74 chr1 33923773 33923877 -248269787 + L1M4c LINE L1 4312 4417 -1965 1840 144 0 33 chr1 33923877 33924183 -248269481 + AluSx SINE Alu 1 296 -16 1984 129 0 0 chr1 33924191 33924471 -248269193 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1 33924472 33924493 -248269171 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 451 299 48 74 chr1 33924493 33924688 -248268976 + L1M4c LINE L1 4423 4614 -1768 775 185 0 0 chr1 33924691 33924821 -248268843 + AluJ SINE Alu 2 131 -181 2003 87 27 40 chr1 33924824 33925122 -248268542 + AluSq SINE Alu 1 294 -19 774 221 7 13 chr1 33925142 33925296 -248268368 + AluJ SINE Alu 121 273 -39 773 170 0 21 chr1 33925394 33925535 -248268129 + FLAM_C SINE Alu 2 139 -4 2047 105 0 23 chr1 33925701 33926005 -248267659 + AluY SINE Alu 1 297 -14 353 335 70 15 chr1 33926048 33926320 -248267344 + L1M4c LINE L1 4976 5262 -1120 1110 115 53 43 chr1 33926346 33926555 -248267109 - Tigger7 DNA MER2_type -2 2489 2279 971 141 184 5 chr1 33926546 33926752 -248266912 + MER49 LTR ERV1 6 248 -675 * 916 106 8 0 chr1 33926758 33926890 -248266774 + AluSq/x SINE Alu 1 133 -179 3408 162 19 64 chr1 33926896 33926983 -248266681 + MER49 LTR ERV1 244 333 -590 2136 125 3 0 chr1 33926983 33927294 -248266370 - AluSx SINE Alu 0 312 1 3408 162 19 64 chr1 33927294 33927694 -248265970 + MER49 LTR ERV1 333 694 -229 2396 64 0 0 chr1 33927694 33927990 -248265674 + AluY SINE Alu 1 296 -15 3408 162 19 64 chr1 33927990 33928188 -248265476 + MER49 LTR ERV1 694 899 -24 1706 147 3 103 chr1 33928195 33928333 -248265331 + AluJo SINE Alu 1 91 -211 1980 139 3 16 chr1 33928333 33928650 -248265014 + AluSq SINE Alu 1 313 0 1706 147 3 103 chr1 33928650 33928831 -248264833 + AluJo SINE Alu 90 288 -14 811 297 89 32 chr1 33928905 33929309 -248264355 - L2 LINE L2 -423 2891 2465 2029 123 20 0 chr1 33929309 33929611 -248264053 + AluSx SINE Alu 1 308 -4 406 219 89 32 chr1 33929691 33929814 -248263850 + MER97a DNA MER1_type? 48 177 -717 2147 106 7 0 chr1 33929814 33930115 -248263549 + AluSp SINE Alu 1 303 -10 1992 127 14 0 chr1 33930224 33930516 -248263148 + AluSg SINE Alu 1 296 -14 361 273 36 55 chr1 33930674 33930784 -248262880 - L2 LINE L2 -995 2319 2212 1289 206 0 4 chr1 33930804 33931057 -248262607 - AluJb SINE Alu -2 310 59 2109 120 0 0 chr1 33931091 33931399 -248262265 - AluSg SINE Alu -2 308 1 413 291 69 81 chr1 33931489 33931672 -248261992 + L2 LINE L2 2215 2396 -918 1941 136 0 0 chr1 33931672 33931981 -248261683 - AluSx SINE Alu 0 309 1 413 291 69 81 chr1 33931981 33932115 -248261549 + L2 LINE L2 2396 2530 -784 345 215 0 0 chr1 33932140 33932205 -248261459 + MIR SINE MIR 173 237 -25 2389 62 0 20 chr1 33932302 33932608 -248261056 + AluSg SINE Alu 2 301 -9 24 53 0 0 chr1 33932984 33933022 -248260642 + AT_rich Low_complexity Low_complexity 1 38 0 1840 159 0 0 chr1 33933027 33933322 -248260342 + AluSx SINE Alu 6 300 -12 1775 133 65 0 chr1 33933442 33933721 -248259943 + AluSg SINE Alu 7 303 -7 3617 170 19 30 chr1 33933790 33933815 -248259849 - L1MB3 LINE L1 -1 6182 6158 1971 152 0 0 chr1 33933815 33934125 -248259539 + AluSx SINE Alu 1 310 -2 3617 170 19 30 chr1 33934125 33934136 -248259528 - L1MB3 LINE L1 -25 6158 6148 1478 170 31 50 chr1 33934136 33934256 -248259408 + AluJo SINE Alu 1 122 -190 207 0 0 0 chr1 33934256 33934279 -248259385 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1478 170 31 50 chr1 33934279 33934324 -248259340 + AluJo SINE Alu 122 166 -146 1984 128 3 13 chr1 33934324 33934637 -248259027 - AluSx SINE Alu -2 310 1 1478 170 31 50 chr1 33934637 33934788 -248258876 + AluJo SINE Alu 166 312 0 3617 170 19 30 chr1 33934788 33935327 -248258337 - L1MB3 LINE L1 -35 6148 5613 2321 70 0 3 chr1 33935327 33935628 -248258036 - AluY SINE Alu -11 300 1 3617 170 19 30 chr1 33935628 33935793 -248257871 - L1MB3 LINE L1 -570 5613 5448 1348 209 7 20 chr1 33935903 33936200 -248257464 - AluJo SINE Alu -15 297 5 787 169 0 0 chr1 33936272 33936390 -248257274 + FLAM_C SINE Alu 2 119 -24 1356 174 3 73 chr1 33936404 33936721 -248256943 + AluJb SINE Alu 1 295 -17 1999 122 3 10 chr1 33937389 33937693 -248255971 - AluSg SINE Alu -8 302 1 190 302 0 16 chr1 33937883 33937946 -248255718 - L2 LINE L2 -1 3312 3251 1363 214 7 0 chr1 33938267 33938282 -248255382 - AluJo SINE Alu -11 301 288 225 0 0 0 chr1 33938282 33938307 -248255357 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1363 214 7 0 chr1 33938307 33938590 -248255074 - AluJo SINE Alu -24 288 1 2153 87 0 31 chr1 33938590 33938911 -248254753 - AluY SINE Alu 0 311 1 438 169 0 56 chr1 33938914 33939003 -248254661 - FRAM SINE Alu -18 158 75 368 229 8 76 chr1 33939103 33939170 -248254494 - AluJo SINE Alu -121 181 124 2182 100 0 0 chr1 33939170 33939469 -248254195 + AluY SINE Alu 3 301 -10 368 229 8 76 chr1 33939469 33939519 -248254145 - AluJo SINE Alu -178 124 72 660 157 46 0 chr1 33939696 33939804 -248253860 - FLAM_C SINE Alu -18 125 13 1421 102 199 38 chr1 33939966 33940003 -248253661 - AluSg1 SINE Alu 0 309 279 234 0 0 0 chr1 33940003 33940029 -248253635 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1421 102 199 38 chr1 33940029 33940257 -248253407 - AluSg1 SINE Alu -30 279 1 1984 101 7 30 chr1 33940259 33940557 -248253107 - AluSq SINE Alu -20 293 3 991 181 6 16 chr1 33940558 33940740 -248252924 - L1MC1 LINE L1 -5 6328 6149 1120 195 24 24 chr1 33940746 33940992 -248252672 + MER58B DNA MER1_type 46 291 -50 484 118 0 0 chr1 33940992 33941060 -248252604 + AluSq/x SINE Alu 37 104 -209 1128 187 29 29 chr1 33941083 33941189 -248252475 - AluJo SINE Alu -66 246 141 2357 68 3 0 chr1 33941189 33941484 -248252180 - AluSp SINE Alu -12 301 6 1128 187 29 29 chr1 33941484 33941623 -248252041 - AluJo SINE Alu -170 142 1 207 234 43 0 chr1 33941997 33942044 -248251620 + CT-rich Low_complexity Low_complexity 5 53 0 702 146 0 16 chr1 33942204 33942327 -248251337 + AluJo/FLAM SINE Alu 2 122 -190 1246 152 0 9 chr1 33942330 33942540 -248251124 - AluSg/x SINE Alu -20 290 83 308 114 0 0 chr1 33942540 33942584 -248251080 - AluY SINE Alu -52 249 206 1026 103 0 20 chr1 33942584 33942730 -248250934 - AluSg SINE Alu -167 143 1 1131 170 0 0 chr1 33942736 33942918 -248250746 + AluJb SINE Alu 127 308 -4 391 129 0 0 chr1 33943566 33943628 -248250036 + AluSp/q SINE Alu 241 302 -1 207 0 0 0 chr1 33943818 33943841 -248249823 + (A)n Simple_repeat Simple_repeat 1 23 0 290 242 71 40 chr1 33944248 33944347 -248249317 + MIR SINE MIR 117 218 -44 2094 100 0 7 chr1 33945562 33945853 -248247811 - AluSq SINE Alu -11 302 14 1041 173 0 0 chr1 33945898 33946077 -248247587 - AluJb SINE Alu 0 312 134 2044 130 3 0 chr1 33946077 33946376 -248247288 - AluSx SINE Alu -12 300 1 1599 162 22 29 chr1 33946405 33946719 -248246945 + AluJb SINE Alu 1 312 0 2247 104 0 0 chr1 33946726 33947034 -248246630 + AluSx SINE Alu 1 308 -4 2298 60 3 10 chr1 33947662 33947960 -248245704 + AluY SINE Alu 1 296 -15 1863 109 3 41 chr1 33947971 33948265 -248245399 + AluSx SINE Alu 1 283 -29 207 0 0 0 chr1 33948265 33948288 -248245376 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 1215 160 0 9 chr1 33949134 33949347 -248244317 - AluSq SINE Alu -18 295 85 1556 113 4 4 chr1 33949647 33949885 -248243779 + AluSx SINE Alu 58 295 -17 1956 107 0 57 chr1 33950047 33950365 -248243299 + AluSx SINE Alu 1 300 -12 2042 71 54 0 chr1 33950411 33950691 -248242973 + AluSp SINE Alu 1 295 -18 1777 112 39 0 chr1 33950693 33950953 -248242711 + AluSg SINE Alu 32 301 -9 396 0 0 0 chr1 33950958 33951002 -248242662 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 563 309 34 39 chr1 33951564 33951694 -248241970 - MIR SINE MIR -34 228 98 1661 125 16 43 chr1 33951694 33951998 -248241666 + AluJo SINE Alu 1 296 -16 563 309 34 39 chr1 33951998 33952074 -248241590 - MIR SINE MIR -164 98 23 326 267 44 0 chr1 33952101 33952191 -248241473 + MIR SINE MIR 155 248 -14 827 185 0 0 chr1 33952239 33952385 -248241279 - FRAM SINE Alu -8 168 23 2288 95 0 0 chr1 33952485 33952791 -248240873 + AluSg SINE Alu 1 306 -4 2022 116 30 0 chr1 33952921 33953223 -248240441 + AluSx SINE Alu 1 311 -1 1963 139 7 0 chr1 33953308 33953618 -248240046 - AluSx SINE Alu 0 312 1 893 135 0 0 chr1 33953639 33953772 -248239892 - AluSq/x SINE Alu -180 133 1 2112 112 0 7 chr1 33953800 33954103 -248239561 - AluSq SINE Alu -12 301 1 1779 185 0 0 chr1 33954329 33954632 -248239032 + AluJb SINE Alu 2 304 -8 846 203 0 0 chr1 33954683 33954836 -248238828 - FRAM SINE Alu -1 175 23 2196 106 3 3 chr1 33954932 33955244 -248238420 + AluSq SINE Alu 1 312 -1 2295 108 16 0 chr1 33955244 33955550 -248238114 + AluSq SINE Alu 1 311 -2 313 120 0 0 chr1 33955550 33955600 -248238064 + (GAA)n Simple_repeat Simple_repeat 1 180 0 744 144 100 19 chr1 33955744 33955904 -248237760 - AluSc SINE Alu -18 291 119 * 1167 134 41 0 chr1 33955891 33956063 -248237601 - AluSg/x SINE Alu -9 301 123 2199 79 24 3 chr1 33956147 33956437 -248237227 - AluY SINE Alu -15 296 1 1985 110 29 0 chr1 33957415 33957687 -248235977 + AluSx SINE Alu 26 305 -7 298 114 29 29 chr1 33957710 33957780 -248235884 + CT-rich Low_complexity Low_complexity 5 74 0 548 168 26 0 chr1 33957812 33957925 -248235739 - L1MB8 LINE L1 0 6178 6063 2329 90 3 10 chr1 33957937 33958236 -248235428 - AluSp SINE Alu -16 297 1 921 176 0 21 chr1 33958236 33958424 -248235240 - L1MB8 LINE L1 -445 5739 5556 222 62 0 0 chr1 33958427 33958459 -248235205 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1897 166 0 0 chr1 33958459 33958737 -248234927 - AluJb SINE Alu -32 280 3 2225 105 0 23 chr1 33958751 33959057 -248234607 - AluSx SINE Alu -13 299 1 598 239 42 7 chr1 33959058 33959200 -248234464 - MER58A DNA MER1_type 0 148 2 341 118 0 0 chr1 33959304 33959355 -248234309 + 5S rRNA rRNA 1 51 -70 361 289 112 56 chr1 33959579 33959772 -248233892 - L2 LINE L2 -368 2946 2734 2011 131 3 77 chr1 33959772 33960109 -248233555 + AluSx SINE Alu 1 312 0 361 289 112 56 chr1 33960109 33960164 -248233500 - L2 LINE L2 -580 2734 2684 221 253 274 0 chr1 33960175 33960270 -248233394 + MIR SINE MIR 128 248 -14 1455 159 3 109 chr1 33960359 33960700 -248232964 + AluJb SINE Alu 1 312 0 2096 102 3 38 chr1 33960761 33961074 -248232590 - AluSq SINE Alu -11 302 1 731 103 0 0 chr1 33961594 33961701 -248231963 - AluSg/x SINE Alu -1 311 205 1080 104 0 0 chr1 33961764 33961899 -248231765 + AluSq/x SINE Alu 1 135 -177 2620 52 0 3 chr1 33961899 33962205 -248231459 + AluY SINE Alu 1 305 -6 1637 170 40 53 chr1 33962212 33962305 -248231359 + AluJo SINE Alu 1 94 -218 2189 117 0 0 chr1 33962305 33962608 -248231056 + AluSx SINE Alu 1 303 0 1637 170 40 53 chr1 33962608 33962813 -248230851 + AluJo SINE Alu 94 296 -16 483 254 104 36 chr1 33962841 33963120 -248230544 + HAL1 LINE L1 853 1150 -1357 351 65 0 0 chr1 33963201 33963247 -248230417 + (GGA)n Simple_repeat Simple_repeat 3 48 0 2307 106 3 3 chr1 33963285 33963596 -248230068 - AluSq SINE Alu -2 311 1 2120 107 0 48 chr1 33963598 33963908 -248229756 - AluSx SINE Alu -13 299 5 1506 192 11 11 chr1 33963924 33964210 -248229454 - AluJo SINE Alu -26 286 1 2367 101 3 0 chr1 33964223 33964530 -248229134 - AluSg SINE Alu 0 310 3 463 129 0 32 chr1 33964531 33964624 -248229040 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 1402 182 100 14 chr1 33964624 33964904 -248228760 - AluJo SINE Alu 0 312 9 833 256 67 71 chr1 33964904 33965354 -248228310 + L2 LINE L2 2093 2540 -774 603 202 0 0 chr1 33965357 33965461 -248228203 + FLAM_A SINE Alu 1 104 -38 312 206 41 72 chr1 33965481 33965578 -248228086 + L1MC4 LINE L1 6612 6705 -1337 * 328 246 52 46 chr1 33965516 33965618 -248228046 - L1MC4 LINE L1 -1337 6705 6605 1981 125 36 11 chr1 33965618 33965899 -248227765 + AluSx SINE Alu 1 288 -24 328 246 52 46 chr1 33965899 33965987 -248227677 - L1MC4 LINE L1 -1437 6605 6519 2246 104 3 0 chr1 33965987 33966274 -248227390 + AluSx SINE Alu 1 288 -24 328 246 52 46 chr1 33966274 33966369 -248227295 - L1MC4 LINE L1 -1523 6519 1650 337 248 88 16 chr1 33966383 33966508 -248227156 - L2 LINE L2 -649 2665 2532 232 180 49 0 chr1 33966508 33966569 -248227095 + (TA)n Simple_repeat Simple_repeat 2 65 0 307 169 182 26 chr1 33966570 33966647 -248227017 - L1MC4 LINE L1 -1339 6703 6615 * 342 283 40 10 chr1 33966623 33966722 -248226942 + L1MC4 LINE L1 6608 6709 -1333 396 338 108 5 chr1 33966922 33967126 -248226538 + MIR SINE MIR 17 241 -21 247 256 39 26 chr1 33967450 33967528 -248226136 + MIR SINE MIR 15 93 -169 237 234 0 0 chr1 33968920 33968984 -248224680 + (CA)n Simple_repeat Simple_repeat 1 64 0 185 188 21 21 chr1 33968986 33969034 -248224630 + L2 LINE L2 3189 3236 -77 4782 160 22 19 chr1 33969049 33969453 -248224211 - L1MB7 LINE L1 -13 6171 5770 2053 157 3 10 chr1 33969453 33969465 -248224199 - AluJb SINE Alu -1 311 300 270 0 0 0 chr1 33969465 33969495 -248224169 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2053 157 3 10 chr1 33969495 33969795 -248223869 - AluJb SINE Alu -12 300 1 4782 160 22 19 chr1 33969795 33970372 -248223292 - L1MB7 LINE L1 -414 5770 5188 2275 109 10 10 chr1 33970478 33970789 -248222875 - AluY SINE Alu 0 311 1 1063 200 0 0 chr1 33970803 33970983 -248222681 + AluJb SINE Alu 1 180 -132 438 104 0 0 chr1 33971084 33971151 -248222513 + Alu SINE Alu 240 306 -6 5147 184 31 34 chr1 33971154 33971578 -248222086 - L1MB7 LINE L1 -1062 5084 4660 2094 109 29 4 chr1 33971578 33971883 -248221781 - AluSx SINE Alu 0 312 1 5147 184 31 34 chr1 33971883 33972651 -248221013 - L1MB7 LINE L1 -1486 4660 3895 189 225 56 56 chr1 33972837 33972908 -248220756 - MIR SINE MIR -97 165 95 492 57 0 91 chr1 33972910 33972961 -248220703 - MADE1 DNA Mariner 0 80 39 2368 93 7 0 chr1 33972961 33973261 -248220403 + AluSx SINE Alu 1 302 -10 492 57 0 91 chr1 33973261 33973297 -248220367 - MADE1 DNA Mariner -41 39 1 1186 153 0 0 chr1 33973536 33973712 -248219952 - AluJo/FRAM SINE Alu -3 309 134 1898 177 10 3 chr1 33973713 33974013 -248219651 - AluJb SINE Alu -10 302 1 2186 111 3 0 chr1 33974145 33974456 -248219208 - AluSq SINE Alu 0 313 1 295 231 16 83 chr1 33974567 33974688 -248218976 - MIR SINE MIR -66 196 84 540 250 157 0 chr1 33975245 33975417 -248218247 - MIR SINE MIR -12 250 52 388 277 45 0 chr1 33975576 33975688 -248217976 + MIR SINE MIR 26 142 -120 836 220 8 106 chr1 33976140 33976395 -248217269 - MIR SINE MIR -29 233 4 1825 166 0 3 chr1 33976528 33976811 -248216853 + AluJb SINE Alu 14 295 -17 1922 182 0 3 chr1 33976813 33977126 -248216538 + AluJb SINE Alu 1 312 0 26 0 0 0 chr1 33977126 33977152 -248216512 + AT_rich Low_complexity Low_complexity 1 26 0 202 0 59 29 chr1 33977278 33977312 -248216352 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1628 151 0 0 chr1 33977442 33977697 -248215967 + AluSg SINE Alu 52 306 0 1140 114 57 0 chr1 33977697 33977855 -248215809 + AluSq SINE Alu 131 297 -16 509 283 146 5 chr1 33977876 33978088 -248215576 - MIR SINE MIR -13 249 8 469 278 9 0 chr1 33978895 33979003 -248214661 - MER81 DNA DNA -4 110 2 2298 112 0 0 chr1 33979112 33979408 -248214256 + AluSx SINE Alu 1 296 -16 2209 96 30 0 chr1 33979703 33980004 -248213660 - AluSx SINE Alu -2 310 1 2482 88 0 0 chr1 33980004 33980299 -248213365 - AluSc SINE Alu -14 295 1 2344 86 3 13 chr1 33980302 33980604 -248213060 - AluY SINE Alu -12 299 1 313 225 109 4 chr1 33981214 33981335 -248212329 + MIR3 SINE MIR 12 156 -52 2451 63 0 10 chr1 33981335 33981635 -248212029 + AluY SINE Alu 1 297 -14 203 339 0 0 chr1 33981812 33981871 -248211793 + L2 LINE L2 3153 3211 -61 376 88 0 10 chr1 33981874 33981944 -248211720 - AluSg SINE Alu -219 81 29 1567 89 20 0 chr1 33981949 33982151 -248211513 + AluSg/x SINE Alu 85 290 -19 1949 138 7 16 chr1 33982233 33982537 -248211127 + AluJb SINE Alu 1 301 -11 585 198 0 0 chr1 33982879 33983005 -248210659 + (TG)n Simple_repeat Simple_repeat 2 127 0 322 259 152 0 chr1 33983106 33983218 -248210446 + L2 LINE L2 3181 3309 -4 313 213 43 11 chr1 33983382 33983476 -248210188 + MIR3 SINE MIR 90 186 -22 503 194 31 0 chr1 33983684 33983782 -248209882 - MIR SINE MIR -65 143 43 439 348 6 6 chr1 33984817 33984978 -248208686 - L2 LINE L2 -24 3289 3129 1035 140 30 6 chr1 33984984 33985148 -248208516 + FRAM SINE Alu 6 173 -3 2324 114 0 0 chr1 33985151 33985450 -248208214 + AluSx SINE Alu 3 301 -11 1125 76 0 0 chr1 33985450 33985581 -248208083 + AluSg SINE Alu 1 131 -179 2582 77 0 0 chr1 33985585 33985896 -248207768 + AluY SINE Alu 1 311 0 783 176 0 0 chr1 33985936 33986067 -248207597 - FLAM_C SINE Alu 0 133 3 1976 134 0 10 chr1 33986099 33986397 -248207267 + AluSx SINE Alu 1 295 -17 288 250 57 73 chr1 33986494 33986618 -248207046 + L2 LINE L2 3183 3304 -9 1745 195 3 0 chr1 33986877 33987184 -248206480 + AluJo SINE Alu 1 308 -4 378 265 143 31 chr1 33987319 33987521 -248206143 - MIR SINE MIR -14 248 29 189 0 0 0 chr1 33987531 33987552 -248206112 + (A)n Simple_repeat Simple_repeat 1 21 0 2262 121 0 0 chr1 33987646 33987944 -248205720 - AluSx SINE Alu -14 298 1 462 316 19 0 chr1 33988236 33988394 -248205270 - MIR3 SINE MIR -13 195 35 350 164 27 0 chr1 33988457 33988530 -248205134 + MIR SINE MIR 67 141 -67 184 372 0 0 chr1 33989009 33989087 -248204577 + MIR SINE MIR 58 135 -73 754 208 84 25 chr1 33989366 33989537 -248204127 + MIR SINE MIR 44 230 -32 1991 148 3 26 chr1 33989537 33989847 -248203817 - AluJo SINE Alu -9 303 1 754 208 84 25 chr1 33989847 33989877 -248203787 + MIR SINE MIR 230 257 -5 1739 241 151 24 chr1 33989992 33990569 -248203095 + MER21B LTR ERV1 102 751 -112 304 203 165 0 chr1 33991451 33991530 -248202134 + MIR SINE MIR 171 262 0 2187 135 0 0 chr1 33991860 33992164 -248201500 + AluJb SINE Alu 2 305 -7 2281 97 3 7 chr1 33992307 33992607 -248201057 - AluSq SINE Alu -14 299 1 783 156 39 84 chr1 33992646 33992692 -248200972 + MER45A DNA AcHobo 8 55 -1526 2133 138 3 13 chr1 33992692 33992867 -248200797 - AluSx SINE Alu -4 308 136 2111 125 20 3 chr1 33992867 33993170 -248200494 - AluSc SINE Alu -1 308 1 2133 138 3 13 chr1 33993170 33993305 -248200359 - AluSx SINE Alu -176 136 1 783 156 39 84 chr1 33993305 33993359 -248200305 + MER45A DNA AcHobo 55 110 -1471 1939 125 24 20 chr1 33993359 33993656 -248200008 - AluSp SINE Alu -15 298 1 783 156 39 84 chr1 33993656 33993733 -248199931 + MER45A DNA AcHobo 110 178 0 218 286 12 48 chr1 33993776 33993860 -248199804 - MIR SINE MIR -179 83 3 1788 137 8 0 chr1 33994071 33994327 -248199337 - AluSq SINE Alu -6 307 50 340 173 11 11 chr1 33994367 33994444 -248199220 - Alu SINE Alu -253 50 6 488 211 78 28 chr1 33994466 33994608 -248199056 + L2 LINE L2 3156 3304 -9 639 264 53 19 chr1 33995189 33995397 -248198267 - MIR SINE MIR -35 227 13 277 224 0 51 chr1 33995400 33995498 -248198166 + C-rich Low_complexity Low_complexity 4 96 0 31 44 0 0 chr1 33995779 33995824 -248197840 + GC_rich Low_complexity Low_complexity 1 45 0 951 273 81 61 chr1 33996677 33997087 -248196577 - MLT1K LTR MaLR -100 488 71 2150 133 0 16 chr1 33997095 33997411 -248196253 + AluSx SINE Alu 1 311 -1 594 212 180 37 chr1 33997413 33997630 -248196034 - MLT1H LTR MaLR -57 492 245 1561 121 5 5 chr1 33997673 33997897 -248195767 - AluSg/x SINE Alu -4 308 85 634 247 70 0 chr1 33998901 33999087 -248194577 - MIR SINE MIR -12 250 52 380 129 0 0 chr1 34000252 34000314 -248193350 + Alu SINE Alu 241 302 0 2429 91 3 0 chr1 34000334 34000631 -248193033 - AluSp SINE Alu -15 298 1 821 173 0 0 chr1 34000633 34000766 -248192898 - AluJo/FLAM SINE Alu -169 133 1 260 269 0 0 chr1 34000802 34000869 -248192795 - L2 LINE L2 -49 3223 3157 341 260 47 16 chr1 34000880 34001007 -248192657 - MER5A DNA MER1_type -3 186 56 260 285 57 41 chr1 34000907 34001030 -248192634 + MER5B DNA MER1_type 31 155 -23 * 281 307 83 16 chr1 34001074 34001218 -248192446 + MIR SINE MIR 30 182 -61 869 292 158 3 chr1 34001642 34001991 -248191673 + L3 LINE CR1 857 1259 -318 696 279 10 10 chr1 34002013 34002210 -248191454 + MIR SINE MIR 18 214 -48 266 208 52 39 chr1 34002300 34002377 -248191287 - MIR3 SINE MIR -48 160 83 2440 93 6 0 chr1 34002964 34003275 -248190389 + AluSp SINE Alu 1 313 0 337 263 147 39 chr1 34003388 34003544 -248190120 + MIR SINE MIR 12 184 -78 1005 171 0 0 chr1 34003561 34003719 -248189945 + AluJb SINE Alu 140 297 -15 180 0 0 0 chr1 34003719 34003739 -248189925 + (GGGAA)n Simple_repeat Simple_repeat 2 21 0 265 257 107 71 chr1 34003795 34003935 -248189729 - MIR SINE MIR -35 227 83 368 284 60 0 chr1 34005421 34005537 -248188127 + MIR3 SINE MIR 13 135 -73 336 241 69 26 chr1 34005577 34005713 -248187951 - MIR SINE MIR -63 145 48 1689 136 114 0 chr1 34007074 34007347 -248186317 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr1 34007422 34007442 -248186222 + (A)n Simple_repeat Simple_repeat 1 20 0 1659 174 6 42 chr1 34007847 34008158 -248185506 + AluJo SINE Alu 1 300 -12 1261 159 0 5 chr1 34008236 34008402 -248185262 - AluSg/x SINE Alu -28 282 116 222 37 0 0 chr1 34008402 34008429 -248185235 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1261 159 0 5 chr1 34008429 34008463 -248185201 - AluSg/x SINE Alu -194 116 83 978 132 0 0 chr1 34008468 34008597 -248185067 - AluSq/x SINE Alu -184 129 1 6574 72 33 43 chr1 34009050 34010013 -248183651 - SVA Other Other 0 1386 433 1859 124 29 14 chr1 34010026 34010372 -248183292 - SVA Other Other -592 794 444 308 200 50 38 chr1 34011593 34011673 -248181991 + MIR SINE MIR 64 144 -64 187 179 51 0 chr1 34011713 34011752 -248181912 + L2 LINE L2 3192 3232 -81 2113 126 14 0 chr1 34011942 34012235 -248181429 + AluSx SINE Alu 1 297 -15 388 165 39 48 chr1 34012315 34012418 -248181246 - MIR SINE MIR -1 261 160 1793 171 13 3 chr1 34012467 34012766 -248180898 - AluJo SINE Alu -10 302 1 645 248 58 50 chr1 34013503 34013761 -248179903 + MIR SINE MIR 3 262 0 436 285 44 32 chr1 34013878 34014036 -248179628 + MIR3 SINE MIR 24 183 -25 838 169 14 7 chr1 34014076 34014218 -248179446 - AluJo/FRAM SINE Alu -3 309 167 521 195 0 0 chr1 34014218 34014305 -248179359 - FRAM/FAM SINE Alu -90 86 1 218 158 0 0 chr1 34014610 34014648 -248179016 - MIR SINE MIR -43 219 182 478 266 33 94 chr1 34014649 34014924 -248178740 - MIR SINE MIR -3 259 2 191 162 27 0 chr1 34014962 34014999 -248178665 + MIR SINE MIR 117 154 -108 349 229 140 21 chr1 34015074 34015242 -248178422 + MIR SINE MIR 67 262 0 191 389 0 0 chr1 34015816 34015906 -248177758 + MIR SINE MIR 77 166 -96 199 298 32 23 chr1 34016155 34016292 -248177372 - MIR SINE MIR -14 248 31 1836 106 0 4 chr1 34016488 34016723 -248176941 + AluSq SINE Alu 1 234 -79 359 255 10 20 chr1 34016783 34016885 -248176779 - MIR SINE MIR -78 184 84 22 35 0 0 chr1 34017015 34017044 -248176620 + AT_rich Low_complexity Low_complexity 1 29 0 1582 157 51 20 chr1 34017149 34017265 -248176399 + AluJo SINE Alu 1 112 -200 432 0 0 0 chr1 34017265 34017313 -248176351 + (TC)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 34017312 34017341 -248176323 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1582 157 51 20 chr1 34017313 34017347 -248176317 + AluJo SINE Alu 112 143 -169 2424 104 3 0 chr1 34017347 34017656 -248176008 + AluSp SINE Alu 1 310 -3 1582 157 51 20 chr1 34017656 34017825 -248175839 + AluJo SINE Alu 143 302 -10 1716 93 86 91 chr1 34017965 34018001 -248175663 + L1MA3 LINE L1 5922 5957 -348 2410 61 0 0 chr1 34018001 34018323 -248175341 + AluY SINE Alu 2 323 0 1716 93 86 91 chr1 34018323 34018356 -248175308 + L1MA3 LINE L1 5957 5989 -316 823 141 0 15 chr1 34018356 34018491 -248175173 + FLAM_C SINE Alu 1 133 0 1716 93 86 91 chr1 34018491 34018650 -248175014 + L1MA3 LINE L1 5989 6152 -153 2475 86 0 3 chr1 34018650 34018953 -248174711 + AluSq SINE Alu 6 307 -6 1716 93 86 91 chr1 34018953 34019107 -248174557 + L1MA3 LINE L1 6152 6305 0 615 278 32 16 chr1 34019419 34019606 -248174058 + MIR SINE MIR 20 209 -53 430 254 106 0 chr1 34019751 34019893 -248173771 + MIR SINE MIR 81 237 -25 313 211 40 0 chr1 34019917 34019993 -248173671 + MIR3 SINE MIR 109 187 -21 207 0 0 0 chr1 34020184 34020207 -248173457 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 905 169 26 53 chr1 34020233 34020422 -248173242 + AluJb SINE Alu 85 268 -44 239 320 13 0 chr1 34020627 34020705 -248172959 - L2 LINE L2 -8 3305 3227 226 280 140 10 chr1 34020714 34020814 -248172850 + MIR SINE MIR 33 145 -63 1468 189 0 8 chr1 34020933 34021192 -248172472 + AluJb SINE Alu 1 257 -55 265 264 0 44 chr1 34022139 34022230 -248171434 + MIR SINE MIR 57 143 -65 439 293 208 0 chr1 34022260 34022472 -248171192 - MIR SINE MIR -2 260 5 495 209 20 40 chr1 34022474 34022622 -248171042 - MIR SINE MIR -54 208 64 2109 134 0 3 chr1 34022704 34022996 -248170668 + AluSx SINE Alu 1 291 -21 2331 87 10 10 chr1 34023005 34023305 -248170359 + AluSx SINE Alu 1 300 -12 191 159 23 23 chr1 34023532 34023576 -248170088 - L2 LINE L2 -8 3305 3262 376 276 112 40 chr1 34023598 34023750 -248169914 + MIR SINE MIR 49 211 -51 366 246 282 5 chr1 34023723 34023918 -248169746 - MIR SINE MIR 0 262 14 * 1965 138 27 3 chr1 34024206 34024503 -248169161 + AluSx SINE Alu 6 309 -3 2391 114 0 0 chr1 34024503 34024811 -248168853 + AluSc SINE Alu 1 308 -1 287 248 138 9 chr1 34025077 34025186 -248168478 + MIR SINE MIR 14 136 -126 332 200 0 0 chr1 34025362 34025422 -248168242 + Tigger5 DNA MER2_type 2264 2323 0 248 267 158 17 chr1 34025749 34025869 -248167795 + L3 LINE CR1 1430 1566 -11 2399 56 0 14 chr1 34026085 34026394 -248167270 + AluY SINE Alu 1 305 0 333 92 10 0 chr1 34026433 34026502 -248167162 - Alu SINE Alu 0 301 249 2334 111 3 0 chr1 34026602 34026908 -248166756 - AluSx SINE Alu -5 307 1 603 216 67 58 chr1 34027034 34027242 -248166422 - MIR SINE MIR -33 229 20 277 311 117 62 chr1 34027756 34027827 -248165837 + L2 LINE L2 2643 2709 -563 2216 106 7 0 chr1 34027827 34028129 -248165535 + AluSx SINE Alu 2 305 0 277 311 117 62 chr1 34028129 34028206 -248165458 + L2 LINE L2 2709 2780 -492 952 146 5 102 chr1 34028206 34028269 -248165395 - MER5A DNA MER1_type -2 187 119 2492 60 0 0 chr1 34028269 34028554 -248165110 + AluSc SINE Alu 1 285 -24 952 146 5 102 chr1 34028554 34028696 -248164968 - MER5A DNA MER1_type -70 119 2 277 311 117 62 chr1 34028696 34029139 -248164525 + L2 LINE L2 2780 3271 -1 2324 109 7 0 chr1 34029227 34029529 -248164135 - AluSx SINE Alu -8 304 1 242 256 151 0 chr1 34029529 34029615 -248164049 - L2 LINE L2 -23 3290 3192 2434 77 0 29 chr1 34029686 34029998 -248163666 + AluSp SINE Alu 2 304 -9 386 308 76 27 chr1 34030060 34030245 -248163419 - MIR SINE MIR -35 227 34 1320 258 142 57 chr1 34030394 34030987 -248162677 + MER115 DNA AcHobo 51 693 0 243 228 167 18 chr1 34031311 34031425 -248162239 - MIR SINE MIR -14 248 118 574 286 15 44 chr1 34031432 34031638 -248162026 + MIR SINE MIR 57 256 -6 2178 103 0 7 chr1 34031640 34031985 -248161679 + AluSc SINE Alu 1 343 0 264 312 11 0 chr1 34032095 34032188 -248161476 - MIR3 SINE MIR -4 204 111 1942 167 0 3 chr1 34032536 34032830 -248160834 + AluJo SINE Alu 1 293 -19 2200 118 0 3 chr1 34032836 34033141 -248160523 + AluSx SINE Alu 2 305 -7 948 98 0 0 chr1 34033141 34033263 -248160401 + AluSq SINE Alu 134 255 -58 189 0 0 0 chr1 34033269 34033290 -248160374 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1123 165 0 98 chr1 34033406 34033456 -248160208 - LTR8 LTR ERV1 -462 229 176 2390 84 0 0 chr1 34033456 34033752 -248159912 + AluY SINE Alu 1 296 -15 1123 165 0 98 chr1 34033752 34033955 -248159709 - LTR8 LTR ERV1 -515 176 1 267 228 109 11 chr1 34034225 34034317 -248159347 + MIR3 SINE MIR 56 156 -52 2005 152 0 10 chr1 34034417 34034727 -248158937 + AluSx SINE Alu 1 307 -5 727 169 0 8 chr1 34034738 34034862 -248158802 + FLAM_A SINE Alu 2 124 -9 183 253 67 40 chr1 34034896 34034971 -248158693 - MER5A DNA MER1_type -49 140 64 * 418 220 114 38 chr1 34034968 34035100 -248158564 - L2 LINE L2 -4 3309 3168 1927 171 7 0 chr1 34035102 34035412 -248158252 + AluJo SINE Alu 1 312 0 434 238 32 40 chr1 34035439 34035565 -248158099 - L2 LINE L2 -12 3301 3177 585 292 22 11 chr1 34035577 34035762 -248157902 - MIR SINE MIR -75 187 1 856 140 33 7 chr1 34035860 34036010 -248157654 - MLT1F1 LTR MaLR -4 563 410 860 192 0 19 chr1 34036018 34036174 -248157490 + FRAM SINE Alu 1 153 -13 1082 91 0 0 chr1 34036200 34036332 -248157332 + AluSq/x SINE Alu 5 136 -177 1969 120 16 54 chr1 34036332 34036649 -248157015 + AluSg SINE Alu 1 305 -5 1767 129 4 12 chr1 34036657 34036905 -248156759 + AluSq SINE Alu 1 246 -67 315 132 53 53 chr1 34037538 34037602 -248156062 + CT-rich Low_complexity Low_complexity 2 68 -47 2427 68 20 0 chr1 34037602 34037895 -248155769 - AluSx SINE Alu -13 299 1 315 132 53 53 chr1 34037895 34037944 -248155720 + CT-rich Low_complexity Low_complexity 67 115 0 2283 116 3 0 chr1 34037956 34038259 -248155405 - AluSx SINE Alu -8 304 1 264 140 2 0 chr1 34038509 34038560 -248155104 - MIR SINE MIR -56 152 100 1466 182 87 14 chr1 34038565 34038841 -248154823 + AluJb SINE Alu 1 300 -12 423 0 0 0 chr1 34038841 34038888 -248154776 + (CA)n Simple_repeat Simple_repeat 2 48 0 2393 93 3 0 chr1 34039157 34039458 -248154206 - AluSq SINE Alu -9 304 3 2235 110 0 7 chr1 34039460 34039751 -248153913 - AluSg SINE Alu -19 291 3 1615 176 0 91 chr1 34039753 34040082 -248153582 - AluJb SINE Alu -13 299 1 239 62 0 0 chr1 34040082 34040114 -248153550 - Alu SINE Alu -159 143 112 432 276 112 12 chr1 34040325 34040495 -248153169 + MIR SINE MIR 20 206 -56 278 122 0 0 chr1 34040540 34040589 -248153075 - Alu SINE Alu -2 300 252 465 82 137 0 chr1 34040589 34040662 -248153002 + AluSc SINE Alu 216 298 -11 226 276 63 55 chr1 34040768 34040895 -248152769 + MIR SINE MIR 33 160 -102 1873 173 0 37 chr1 34041556 34041879 -248151785 - AluJo SINE Alu -1 311 1 2298 79 7 0 chr1 34042015 34042321 -248151343 + AluY SINE Alu 1 308 0 818 124 51 56 chr1 34042365 34042543 -248151121 - AluJo SINE Alu -114 198 22 228 125 0 50 chr1 34042571 34042611 -248151053 + LTR67 LTR ERVL 520 557 0 2259 93 0 10 chr1 34042773 34043064 -248150600 - AluSg SINE Alu -22 288 1 843 72 90 0 chr1 34043185 34043296 -248150368 - AluSq/x SINE Alu -191 121 1 939 175 6 0 chr1 34043296 34043479 -248150185 - LTR54 LTR ERV1 -6 504 321 704 190 7 0 chr1 34043490 34043627 -248150037 + AluJb SINE Alu 13 150 -162 693 106 0 35 chr1 34043633 34043728 -248149936 + AluSq/x SINE Alu 42 134 -179 2397 90 3 0 chr1 34043728 34044028 -248149636 + AluY SINE Alu 1 301 -10 693 106 0 35 chr1 34044028 34044045 -248149619 + AluSq/x SINE Alu 134 150 -163 2075 114 7 23 chr1 34044066 34044365 -248149299 + AluSx SINE Alu 1 294 -18 1950 106 103 7 chr1 34044365 34044647 -248149017 + AluSx SINE Alu 1 309 -3 923 138 0 83 chr1 34044647 34044828 -248148836 + AluJo/FRAM SINE Alu 137 302 -10 2103 133 0 13 chr1 34044828 34045128 -248148536 + AluSx SINE Alu 1 296 -16 1016 154 89 117 chr1 34045143 34045468 -248148196 - LTR54 LTR ERV1 -193 317 2 366 23 0 0 chr1 34046224 34046267 -248147397 + (CA)n Simple_repeat Simple_repeat 2 44 0 429 230 158 0 chr1 34046279 34046431 -248147233 + L2 LINE L2 2562 2737 -577 308 285 152 7 chr1 34046506 34046657 -248147007 + L2 LINE L2 2999 3171 -142 1653 175 0 70 chr1 34047114 34047202 -248146462 + AluJb SINE Alu 5 98 -214 2363 80 0 16 chr1 34047202 34047513 -248146151 + AluSx SINE Alu 1 306 -6 1653 175 0 70 chr1 34047513 34047574 -248146090 + AluJb SINE Alu 98 162 -150 2140 134 0 10 chr1 34047574 34047873 -248145791 + AluSx SINE Alu 1 296 -16 1653 175 0 70 chr1 34047873 34048037 -248145627 + AluJb SINE Alu 162 297 -15 432 0 0 0 chr1 34048117 34048165 -248145499 + (CA)n Simple_repeat Simple_repeat 1 48 0 788 203 94 10 chr1 34048651 34048843 -248144821 + MER63A DNA MER1_type 1 208 -2 483 324 68 10 chr1 34048978 34049185 -248144479 + MIR SINE MIR 2 220 -42 2201 100 3 32 chr1 34049264 34049573 -248144091 + AluSq SINE Alu 1 300 -13 1920 165 3 13 chr1 34049582 34049891 -248143773 + AluSx SINE Alu 1 306 -6 491 291 30 1 chr1 34049952 34050131 -248143533 + L1ME2 LINE L1 5985 6164 0 1869 140 55 3 chr1 34050515 34050808 -248142856 + AluJo SINE Alu 5 312 0 2178 98 3 65 chr1 34051407 34051732 -248141932 + AluSg SINE Alu 1 305 -5 1846 164 6 25 chr1 34051760 34052078 -248141586 - AluJo SINE Alu 0 312 1 2509 65 7 0 chr1 34052197 34052503 -248141161 - AluY SINE Alu -3 308 1 2034 159 10 0 chr1 34052507 34052809 -248140855 - AluJb SINE Alu -7 305 1 2352 99 6 10 chr1 34052888 34053200 -248140464 + AluSx SINE Alu 1 311 -1 2267 106 17 0 chr1 34053226 34053528 -248140136 + AluSx SINE Alu 1 307 -5 2251 102 3 0 chr1 34054319 34054626 -248139038 + AluSq SINE Alu 1 308 0 22 0 0 0 chr1 34054712 34054734 -248138930 + AT_rich Low_complexity Low_complexity 1 22 0 2250 109 3 0 chr1 34054736 34055046 -248138618 + AluSq SINE Alu 1 311 0 306 264 90 21 chr1 34055070 34055310 -248138354 + L1MEd LINE L1 1023 1328 -4866 267 323 54 0 chr1 34055682 34055775 -248137889 - MIR SINE MIR -48 214 117 1961 121 0 26 chr1 34055780 34056053 -248137611 + AluSq SINE Alu 34 299 -14 1837 171 4 0 chr1 34056077 34056402 -248137262 + AluJb SINE Alu 1 326 0 1990 110 55 0 chr1 34056431 34056703 -248136961 - AluSx SINE Alu -25 287 1 180 228 205 41 chr1 34056800 34056971 -248136693 - L2 LINE L2 -240 3032 2834 2429 92 0 0 chr1 34057041 34057346 -248136318 - AluSg SINE Alu -5 305 1 202 218 73 0 chr1 34057382 34057437 -248136227 + MIR SINE MIR 204 262 0 242 172 124 183 chr1 34057477 34057663 -248136001 - MLT1K LTR MaLR 0 588 414 252 0 0 0 chr1 34057965 34057993 -248135671 + (A)n Simple_repeat Simple_repeat 1 28 0 610 269 112 13 chr1 34058134 34058398 -248135266 - HAL1 LINE L1 -1040 1467 1153 1714 196 4 0 chr1 34058398 34058701 -248134963 - AluJb SINE Alu 0 304 1 610 269 112 13 chr1 34058701 34058811 -248134853 - HAL1 LINE L1 -1354 1153 1055 180 0 0 0 chr1 34058853 34058873 -248134791 + (T)n Simple_repeat Simple_repeat 1 20 0 2051 82 8 0 chr1 34058875 34059130 -248134534 - AluSq SINE Alu -55 258 2 2276 103 0 0 chr1 34059256 34059546 -248134118 - AluSx SINE Alu -22 290 1 1705 185 0 7 chr1 34059578 34059859 -248133805 + AluSx SINE Alu 5 283 -29 2464 84 0 0 chr1 34059887 34060183 -248133481 + AluSx SINE Alu 11 306 -6 2591 60 0 0 chr1 34060183 34060482 -248133182 + AluY SINE Alu 1 299 -12 1514 147 0 9 chr1 34060481 34060712 -248132952 + AluSg/x SINE Alu 68 296 -16 * 2401 96 3 3 chr1 34060771 34061083 -248132581 + AluSp SINE Alu 1 312 -1 983 143 19 19 chr1 34061109 34061255 -248132409 + FRAM SINE Alu 1 28 -148 2387 108 0 3 chr1 34061255 34061569 -248132095 + AluSq SINE Alu 1 313 0 983 143 19 19 chr1 34061569 34061583 -248132081 + FRAM SINE Alu 27 40 0 2061 115 56 0 chr1 34061633 34061920 -248131744 + AluSx SINE Alu 1 303 -9 262 197 0 33 chr1 34062124 34062185 -248131479 - MIR SINE MIR -104 158 100 754 168 17 0 chr1 34062255 34062374 -248131290 + FRAM SINE Alu 38 158 -18 251 108 0 0 chr1 34062436 34062473 -248131191 + AluJb SINE Alu 82 118 -184 189 0 0 0 chr1 34062481 34062502 -248131162 + (TAA)n Simple_repeat Simple_repeat 2 22 0 303 303 159 7 chr1 34062504 34062516 -248131148 - MIR SINE MIR -32 230 221 483 288 0 0 chr1 34062516 34062648 -248131016 - FLAM_C SINE Alu 0 133 2 303 303 159 7 chr1 34062648 34062780 -248130884 - MIR SINE MIR -41 221 64 2396 110 0 0 chr1 34062874 34063182 -248130482 + AluSx SINE Alu 1 308 -4 2183 111 0 0 chr1 34063380 34063668 -248129996 - AluSc SINE Alu -21 288 1 2051 140 0 0 chr1 34063698 34064010 -248129654 - AluSq SINE Alu 0 312 1 900 218 45 36 chr1 34064026 34064246 -248129418 + AluJo SINE Alu 84 305 -7 609 205 22 100 chr1 34064246 34064468 -248129196 - L1MB7 LINE L1 -47 6137 5932 1988 134 29 10 chr1 34064468 34064774 -248128890 - AluSx SINE Alu 0 312 1 1758 162 14 3 chr1 34064804 34065101 -248128563 - AluJo SINE Alu -10 302 3 379 281 0 42 chr1 34065165 34065261 -248128403 - L1MC4 LINE L1 -1337 6705 6614 * 396 296 0 10 chr1 34065199 34065297 -248128367 + L1MC4 LINE L1 6607 6703 -1339 2407 65 0 7 chr1 34065312 34065604 -248128060 - AluSc SINE Alu -19 290 1 406 275 131 31 chr1 34065610 34065814 -248127850 - L1 LINE L1 -914 5232 5001 2488 54 0 3 chr1 34065814 34066112 -248127552 - AluY SINE Alu -14 297 1 406 275 131 31 chr1 34066112 34066136 -248127528 - L1 LINE L1 -1145 5001 4981 480 309 67 6 chr1 34066152 34066330 -248127334 - MIR SINE MIR -50 212 24 700 197 46 0 chr1 34068807 34068959 -248124705 - L1PB4 LINE L1 -2 6154 5996 2258 99 3 0 chr1 34069792 34070086 -248123578 - AluSg SINE Alu -13 297 3 468 284 37 9 chr1 34070265 34070433 -248123231 + MIR SINE MIR 8 183 -66 1579 157 109 0 chr1 34070478 34070752 -248122912 - AluJo SINE Alu -8 304 1 24 0 0 0 chr1 34070782 34070806 -248122858 + AT_rich Low_complexity Low_complexity 1 24 0 2079 108 56 0 chr1 34070806 34071093 -248122571 - AluSc SINE Alu -6 303 1 688 151 8 17 chr1 34071133 34071252 -248122412 - FLAM_C SINE Alu -15 118 1 2128 129 3 0 chr1 34071503 34071824 -248121840 - AluSx SINE Alu 0 322 1 189 0 0 0 chr1 34071943 34071964 -248121700 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2190 112 0 0 chr1 34071964 34072250 -248121414 - AluSx SINE Alu -26 286 1 183 156 0 0 chr1 34072301 34072333 -248121331 + (TATG)n Simple_repeat Simple_repeat 2 33 0 2319 104 3 0 chr1 34072339 34072636 -248121028 - AluSp SINE Alu -15 298 1 241 203 0 43 chr1 34072762 34072831 -248120833 + C-rich Low_complexity Low_complexity 1 66 0 189 0 0 0 chr1 34072981 34073002 -248120662 + (CCCCCG)n Simple_repeat Simple_repeat 3 23 0 345 310 47 16 chr1 34073268 34073397 -248120267 + MIR SINE MIR 57 189 -73 2439 96 0 3 chr1 34073727 34074040 -248119624 + AluSx SINE Alu 1 312 0 984 88 19 62 chr1 34074110 34074270 -248119394 - AluJb SINE Alu 0 312 160 561 206 30 0 chr1 34074294 34074425 -248119239 - L1ME LINE L1 -607 5557 5423 376 246 101 22 chr1 34074542 34074680 -248118984 + L2 LINE L2 3162 3310 -3 2304 111 0 0 chr1 34074800 34075098 -248118566 + AluSc SINE Alu 1 298 -11 712 246 188 4 chr1 34075216 34075472 -248118192 + MLT1K LTR MaLR 7 309 -279 290 271 21 125 chr1 34075540 34075650 -248118014 - L2 LINE L2 -390 2924 2804 1619 122 0 0 chr1 34075650 34075872 -248117792 - AluSg/x SINE Alu -18 294 73 290 271 21 125 chr1 34075872 34075941 -248117723 - L2 LINE L2 -510 2804 2774 1999 101 0 82 chr1 34075941 34076269 -248117395 - AluSx SINE Alu -11 301 1 290 271 21 125 chr1 34076269 34076328 -248117336 - L2 LINE L2 -540 2774 2710 1320 220 62 22 chr1 34076331 34076604 -248117060 - AluJo SINE Alu -22 290 7 2145 112 7 0 chr1 34076734 34077028 -248116636 + AluSq SINE Alu 3 298 -15 691 165 0 0 chr1 34077181 34077290 -248116374 + FRAM SINE Alu 46 154 -22 2279 100 0 0 chr1 34077432 34077722 -248115942 - AluSg1 SINE Alu -19 290 1 2358 107 3 0 chr1 34077722 34078032 -248115632 - AluSp SINE Alu -2 311 1 678 214 0 0 chr1 34078139 34078256 -248115408 + FLAM_C SINE Alu 2 118 -15 38 0 0 0 chr1 34078256 34078294 -248115370 + AT_rich Low_complexity Low_complexity 1 38 0 2424 91 0 0 chr1 34078313 34078609 -248115055 + AluSq SINE Alu 1 296 -17 2268 112 0 0 chr1 34078841 34079136 -248114528 + AluSx SINE Alu 1 295 -17 719 300 50 3 chr1 34079143 34079440 -248114224 + L1MC4a LINE L1 5605 5915 -1893 1749 191 6 28 chr1 34079490 34079809 -248113855 - AluJb SINE Alu 0 312 1 2387 82 7 0 chr1 34079818 34080121 -248113543 - AluSp SINE Alu -8 305 1 2186 107 0 10 chr1 34080194 34080485 -248113179 - AluSc SINE Alu -21 288 1 249 122 0 0 chr1 34080528 34080569 -248113095 + MER41A LTR ERV1 383 423 -131 2066 94 8 0 chr1 34080570 34080835 -248112829 - AluSg SINE Alu -9 301 35 533 225 21 0 chr1 34081198 34081340 -248112324 + LTR16A1 LTR ERVL 307 451 -6 2353 115 0 6 chr1 34081343 34081656 -248112008 + AluSq SINE Alu 1 311 -2 335 299 58 82 chr1 34081726 34082017 -248111647 - L1ME4a LINE L1 -3 6118 5835 436 314 79 56 chr1 34082027 34082092 -248111572 + L2 LINE L2 2686 2748 -566 2632 123 32 21 chr1 34082092 34082367 -248111297 + LTR23 LTR ERV1 2 272 -165 1968 155 0 25 chr1 34082367 34082543 -248111121 - AluSx SINE Alu -3 309 130 2313 101 0 0 chr1 34082543 34082849 -248110815 - AluSg SINE Alu 0 310 1 2403 89 0 3 chr1 34082853 34083155 -248110509 - AluSg SINE Alu -9 301 1 1968 155 0 25 chr1 34083155 34083290 -248110374 - AluSx SINE Alu -185 127 1 2632 123 32 21 chr1 34083290 34083445 -248110219 + LTR23 LTR ERV1 272 437 0 436 314 79 56 chr1 34083445 34083631 -248110033 + L2 LINE L2 2748 2943 -371 2433 100 3 0 chr1 34083637 34083946 -248109718 - AluSp SINE Alu -3 310 1 1234 139 0 0 chr1 34083957 34084130 -248109534 - AluSg/x SINE Alu -3 309 137 196 352 167 19 chr1 34084132 34084240 -248109424 + L2 LINE L2 2945 3068 -204 315 0 0 0 chr1 34084286 34084321 -248109343 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1278 171 110 20 chr1 34084329 34084435 -248109229 - AluJo SINE Alu -45 267 172 2234 90 4 0 chr1 34084435 34084712 -248108952 - AluSp SINE Alu -33 280 3 1278 171 110 20 chr1 34084712 34084850 -248108814 - AluJo SINE Alu -140 172 1 2012 135 7 3 chr1 34084854 34085160 -248108504 - AluSx SINE Alu 0 307 1 3090 125 14 82 chr1 34085266 34085469 -248108195 + LTR26B LTR ERV1 1 216 -315 2241 105 0 40 chr1 34085469 34085793 -248107871 + AluSq SINE Alu 1 311 -2 2520 67 0 0 chr1 34085799 34086099 -248107565 + AluY SINE Alu 1 300 -11 3090 125 14 82 chr1 34086099 34086161 -248107503 + LTR26B LTR ERV1 221 286 -245 2414 102 3 0 chr1 34086161 34086466 -248107198 + AluSp SINE Alu 1 306 -7 3090 125 14 82 chr1 34086466 34086762 -248106902 + LTR26B LTR ERV1 286 531 0 1933 167 0 0 chr1 34086783 34087065 -248106599 + AluSx SINE Alu 1 282 -30 1675 154 11 0 chr1 34087066 34087332 -248106332 - AluSp SINE Alu -44 269 1 407 313 23 0 chr1 34087388 34087516 -248106148 + L2 LINE L2 3141 3271 -1 201 39 0 0 chr1 34087625 34087651 -248106013 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 2192 86 10 20 chr1 34087666 34087967 -248105697 - AluY SINE Alu -13 298 1 2283 95 0 7 chr1 34087989 34088325 -248105339 - AluSg SINE Alu 0 310 1 1988 114 18 0 chr1 34088505 34088785 -248104879 + AluSp SINE Alu 6 290 -23 853 174 8 0 chr1 34088789 34088921 -248104743 + AluJo SINE Alu 1 133 -169 993 153 0 31 chr1 34088921 34088938 -248104726 + AluJo SINE Alu 134 150 -162 3715 92 16 54 chr1 34088938 34089410 -248104254 + MER41A LTR ERV1 1 450 -104 2038 119 3 3 chr1 34089410 34089743 -248103921 + AluY SINE Alu 1 333 0 3715 92 16 54 chr1 34089743 34089845 -248103819 + MER41A LTR ERV1 450 554 0 993 153 0 31 chr1 34089845 34089990 -248103674 + AluJo SINE Alu 150 291 -21 1985 153 0 23 chr1 34089999 34090350 -248103314 - AluSx SINE Alu 0 312 1 601 171 103 0 chr1 34090351 34090468 -248103196 - AluJb SINE Alu -178 134 6 2295 115 6 6 chr1 34090488 34090801 -248102863 - AluSq SINE Alu 0 313 1 678 227 0 40 chr1 34090810 34090922 -248102742 - FAM SINE Alu -157 164 58 2528 208 92 63 chr1 34090922 34091199 -248102465 - LTR1B LTR ERV1 0 826 558 1919 176 0 3 chr1 34091199 34091501 -248102163 - AluSx SINE Alu -11 301 1 2528 208 92 63 chr1 34091501 34092026 -248101638 - LTR1B LTR ERV1 -268 558 1 678 227 0 40 chr1 34092026 34092063 -248101601 - FAM SINE Alu -263 58 21 2283 115 0 0 chr1 34092274 34092570 -248101094 + AluSx SINE Alu 1 296 -16 1322 105 0 0 chr1 34092780 34092952 -248100712 - AluSg/x SINE Alu -7 303 132 2228 99 24 0 chr1 34092952 34093245 -248100419 - AluSx SINE Alu -12 300 1 900 221 0 0 chr1 34093277 34093440 -248100224 + FRAM SINE Alu 1 163 -3 278 218 0 18 chr1 34093555 34093610 -248100054 + MLT1K LTR MaLR 192 245 -343 27 49 0 0 chr1 34093716 34093757 -248099907 + AT_rich Low_complexity Low_complexity 1 41 0 1982 147 10 0 chr1 34093758 34094050 -248099614 - AluSx SINE Alu -17 295 1 1178 266 90 26 chr1 34094052 34094547 -248099117 - L2 LINE L2 -12 3301 2795 1979 150 0 10 chr1 34094568 34094874 -248098790 - AluSx SINE Alu -9 303 1 962 151 20 0 chr1 34094874 34095020 -248098644 - FRAM SINE Alu -12 164 16 2401 96 3 3 chr1 34095046 34095358 -248098306 - AluSp SINE Alu -1 312 1 25 37 0 37 chr1 34095397 34095426 -248098238 + AT_rich Low_complexity Low_complexity 1 30 -22 1514 140 0 9 chr1 34095426 34095648 -248098016 - AluSg/x SINE Alu -25 287 68 2591 60 0 0 chr1 34095648 34095946 -248097718 - AluY SINE Alu -12 299 1 25 37 0 37 chr1 34095946 34095969 -248097695 + AT_rich Low_complexity Low_complexity 28 52 0 1440 115 0 14 chr1 34096119 34096353 -248097311 - AluSg/x SINE Alu 0 320 90 458 274 6 74 chr1 34096485 34096660 -248097004 - L2 LINE L2 -213 3059 2897 309 307 88 44 chr1 34096657 34096721 -248096943 - L3 LINE CR1 -12 1565 1505 * 840 279 28 4 chr1 34096721 34096975 -248096689 - MIR SINE MIR 0 262 3 309 307 88 44 chr1 34096975 34097047 -248096617 - L3 LINE CR1 -72 1505 1423 2226 112 0 0 chr1 34097151 34097470 -248096194 - AluSq SINE Alu 0 319 1 1012 201 53 5 chr1 34097680 34097889 -248095775 - MER20 DNA MER1_type 0 219 1 240 246 237 0 chr1 34097951 34098069 -248095595 + MIR SINE MIR 114 259 -3 1067 92 14 0 chr1 34098221 34098363 -248095301 - AluSg/x SINE Alu -14 298 155 1619 145 119 11 chr1 34098558 34098827 -248094837 - AluJb SINE Alu -12 300 3 223 314 50 6 chr1 34098835 34098994 -248094670 - L2 LINE L2 -1605 1709 1544 228 67 0 0 chr1 34099006 34099036 -248094628 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 211 167 0 30 chr1 34099036 34099047 -248094617 + GA-rich Low_complexity Low_complexity 2 12 -53 2167 88 20 14 chr1 34099047 34099344 -248094320 + AluSx SINE Alu 1 299 -13 211 167 0 30 chr1 34099344 34099398 -248094266 + GA-rich Low_complexity Low_complexity 12 65 0 2202 119 0 3 chr1 34099398 34099692 -248093972 + AluSg SINE Alu 1 293 -17 719 300 50 3 chr1 34099699 34099996 -248093668 + L1MC4a LINE L1 5605 5915 -1893 1659 202 9 25 chr1 34100046 34100363 -248093301 - AluJb SINE Alu 0 312 1 2387 82 7 0 chr1 34100372 34100675 -248092989 - AluSp SINE Alu -8 305 1 1128 428 43 0 chr1 34100748 34101024 -248092640 - AluSc SINE Alu -11 288 1 249 122 0 0 chr1 34101067 34101108 -248092556 + MER41B LTR ERV1 464 504 -131 2066 94 8 0 chr1 34101109 34101374 -248092290 - AluSg SINE Alu -9 301 35 496 239 21 0 chr1 34101737 34101879 -248091785 + LTR16A1 LTR ERVL 307 451 -6 * 1628 182 28 131 chr1 34101860 34101882 -248091782 + LTR8 LTR ERV1 214 237 -454 2319 98 0 7 chr1 34101882 34102187 -248091477 + AluSx SINE Alu 1 303 -9 1628 182 28 131 chr1 34102187 34102212 -248091452 + LTR8 LTR ERV1 237 263 -428 2111 84 0 8 chr1 34102212 34102473 -248091191 + AluSx SINE Alu 39 297 -15 1628 182 28 131 chr1 34102473 34102694 -248090970 + LTR8 LTR ERV1 263 404 -287 1599 95 153 15 chr1 34102694 34102956 -248090708 + AluSg SINE Alu 1 298 -2 1628 182 28 131 chr1 34102956 34103218 -248090446 + LTR8 LTR ERV1 404 691 0 2028 139 13 0 chr1 34103386 34103687 -248089977 - AluSx SINE Alu -7 305 1 2215 125 0 0 chr1 34103702 34103997 -248089667 - AluSg SINE Alu -15 295 1 249 331 16 48 chr1 34104137 34104261 -248089403 - MER5A DNA MER1_type -29 160 41 1594 110 0 0 chr1 34104268 34104468 -248089196 + AluSx SINE Alu 1 200 -112 443 47 47 0 chr1 34104631 34104695 -248088969 + (TTCTCC)n Simple_repeat Simple_repeat 1 67 0 823 141 0 22 chr1 34104698 34104833 -248088831 - FLAM_C SINE Alu 0 133 2 2321 110 3 3 chr1 34105008 34105317 -248088347 + AluSg SINE Alu 1 309 -1 2191 105 0 56 chr1 34105457 34105645 -248088019 - AluSp SINE Alu -6 307 143 2272 84 3 3 chr1 34105645 34105931 -248087733 - AluSg SINE Alu -24 286 1 2191 105 0 56 chr1 34105931 34106065 -248087599 - AluSp SINE Alu -170 143 3 1925 152 0 36 chr1 34106533 34106842 -248086822 - AluSx SINE Alu -14 298 1 379 255 11 11 chr1 34106911 34107005 -248086659 + MER5B DNA MER1_type 67 160 -18 535 237 183 41 chr1 34107033 34107124 -248086540 - L3 LINE CR1 -88 1489 1412 2333 112 7 0 chr1 34107124 34107429 -248086235 - AluSx SINE Alu -5 307 1 535 237 183 41 chr1 34107429 34107676 -248085988 - L3 LINE CR1 -165 1412 1040 280 326 93 17 chr1 34107673 34107845 -248085819 + L2 LINE L2 2731 2915 -399 * 2158 152 0 0 chr1 34107963 34108272 -248085392 + AluSx SINE Alu 1 309 -3 1782 168 0 11 chr1 34108517 34108803 -248084861 + AluJo SINE Alu 1 283 -29 2092 87 10 21 chr1 34108882 34109193 -248084471 - AluY SINE Alu 0 308 1 2296 92 0 7 chr1 34109215 34109551 -248084113 - AluSg SINE Alu 0 310 1 1867 156 24 0 chr1 34109560 34109849 -248083815 - AluJb SINE Alu -16 296 1 2325 98 7 0 chr1 34110151 34110447 -248083217 + AluY SINE Alu 1 298 -13 2184 135 0 0 chr1 34110460 34110757 -248082907 + AluSq SINE Alu 1 297 -16 1828 149 0 14 chr1 34110787 34111090 -248082574 + AluJb SINE Alu 11 309 0 195 214 0 24 chr1 34111229 34111271 -248082393 - MIR SINE MIR -103 159 119 1831 132 0 0 chr1 34111451 34111702 -248081962 + AluSq SINE Alu 54 304 -9 318 295 43 14 chr1 34111946 34112085 -248081579 + L1ME LINE L1 5604 5746 -375 3851 154 58 18 chr1 34112227 34112956 -248080708 + L1MB7 LINE L1 5425 6182 -2 240 250 0 0 chr1 34112978 34113026 -248080638 + MER81 DNA DNA 1 48 -66 1473 120 48 0 chr1 34113027 34113236 -248080428 + AluSx SINE Alu 1 219 -93 778 100 10 0 chr1 34113236 34113336 -248080328 + AluSc SINE Alu 92 192 -117 475 178 56 9 chr1 34113491 34113598 -248080066 + MIR SINE MIR 148 259 -3 2532 79 0 6 chr1 34113601 34113916 -248079748 - AluSp SINE Alu 0 313 1 760 141 38 113 chr1 34114356 34114462 -248079202 + MER45A DNA AcHobo 1 89 -1492 2218 109 7 0 chr1 34114462 34114756 -248078908 - AluSx SINE Alu -3 309 14 760 141 38 113 chr1 34114756 34114834 -248078830 + MER45A DNA AcHobo 89 171 -7 228 349 0 0 chr1 34114942 34115108 -248078556 + (TG)n Simple_repeat Simple_repeat 1 166 0 279 310 11 0 chr1 34115492 34115666 -248077998 + (TG)n Simple_repeat Simple_repeat 1 176 0 228 329 18 0 chr1 34115584 34115748 -248077916 + G-rich Low_complexity Low_complexity 1 167 0 * 222 291 16 28 chr1 34115790 34115972 -248077692 + (TG)n Simple_repeat Simple_repeat 1 180 0 265 331 53 33 chr1 34116593 34116744 -248076920 + MIR3 SINE MIR 1 154 -54 213 257 228 29 chr1 34116902 34117038 -248076626 - MIR3 SINE MIR -44 164 2 345 232 14 0 chr1 34117159 34117228 -248076436 - MIR SINE MIR -61 147 78 1555 147 13 93 chr1 34117719 34118032 -248075632 - AluJo SINE Alu -24 288 1 2366 83 0 7 chr1 34118188 34118488 -248075176 + AluSx SINE Alu 15 312 0 267 282 27 9 chr1 34118698 34118808 -248074856 + MIR SINE MIR 20 131 -77 276 271 119 34 chr1 34119057 34119144 -248074520 + MIR3 SINE MIR 42 138 -70 415 283 175 18 chr1 34119144 34119310 -248074354 + MIR3 SINE MIR 1 192 -16 30 0 0 0 chr1 34119417 34119447 -248074217 + AT_rich Low_complexity Low_complexity 1 30 0 471 209 29 0 chr1 34119509 34119614 -248074050 - MER63C DNA MER1_type -5 925 818 771 143 0 32 chr1 34119614 34119740 -248073924 + FLAM_C SINE Alu 3 124 -9 1428 145 0 5 chr1 34119747 34119954 -248073710 + AluJo SINE Alu 84 289 -23 1914 186 82 86 chr1 34119976 34120107 -248073557 - MER63C DNA MER1_type -224 836 706 2034 111 0 66 chr1 34120107 34120441 -248073223 - AluSx SINE Alu 0 312 1 1914 186 82 86 chr1 34120441 34120589 -248073075 - MER63C DNA MER1_type -354 706 559 3711 135 51 39 chr1 34120589 34121234 -248072430 - MER39B LTR ERV1 0 653 1 1914 186 82 86 chr1 34121234 34121411 -248072253 - MER63C DNA MER1_type -501 559 383 2231 98 17 10 chr1 34121411 34121708 -248071956 + AluSx SINE Alu 1 299 -13 1914 186 82 86 chr1 34121708 34121923 -248071741 - MER63C DNA MER1_type -677 383 169 1550 198 21 3 chr1 34121923 34122033 -248071631 + AluJo SINE Alu 7 114 -198 208 0 62 0 chr1 34122033 34122065 -248071599 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1550 198 21 3 chr1 34122065 34122242 -248071422 + AluJo SINE Alu 114 299 -13 1914 186 82 86 chr1 34122242 34122292 -248071372 - MER63C DNA MER1_type -891 169 120 2145 132 3 0 chr1 34122292 34122588 -248071076 - AluSx SINE Alu -15 297 1 1914 186 82 86 chr1 34122588 34122701 -248070963 - MER63C DNA MER1_type -940 120 1 227 33 0 0 chr1 34123307 34123337 -248070327 - MER39B LTR ERV1 -604 49 20 572 198 17 17 chr1 34123933 34124049 -248069615 + MIR SINE MIR 51 166 -96 2342 76 0 7 chr1 34124050 34124338 -248069326 + AluSq SINE Alu 1 286 -27 1694 131 13 93 chr1 34124644 34124957 -248068707 - AluJo SINE Alu -24 288 1 312 280 72 16 chr1 34125020 34125145 -248068519 - MIR3 SINE MIR -63 145 14 248 316 26 53 chr1 34125733 34125847 -248067817 - MIR SINE MIR -72 190 80 417 264 46 26 chr1 34126268 34126421 -248067243 - MIR SINE MIR -30 232 29 2396 93 0 7 chr1 34126421 34126721 -248066943 - AluSx SINE Alu -14 298 1 417 264 46 26 chr1 34126721 34126741 -248066923 - MIR SINE MIR -233 29 11 353 280 223 0 chr1 34126795 34126952 -248066712 + MLT1J LTR MaLR 88 279 -232 424 307 127 33 chr1 34126971 34127215 -248066449 + L2 LINE L2 2605 2871 -443 401 297 67 102 chr1 34127276 34127589 -248066075 + L2 LINE L2 2969 3270 -2 299 262 112 0 chr1 34128043 34128150 -248065514 - MIR3 SINE MIR -8 200 82 374 285 20 28 chr1 34128181 34128382 -248065282 + MIR SINE MIR 2 262 0 333 196 186 0 chr1 34128428 34128525 -248065139 - MIR SINE MIR -70 192 78 2035 107 0 11 chr1 34128674 34128979 -248064685 - AluSx SINE Alu 0 318 17 218 323 317 0 chr1 34130077 34130263 -248063401 - L2 LINE L2 -36 3236 2992 2086 133 7 0 chr1 34130263 34130549 -248063115 + AluSx SINE Alu 1 288 -24 21 36 0 0 chr1 34130549 34130577 -248063087 + AT_rich Low_complexity Low_complexity 1 28 0 419 94 47 0 chr1 34130829 34130893 -248062771 + FRAM/FAM SINE Alu 16 82 -94 409 190 70 20 chr1 34130985 34131085 -248062579 - MIR SINE MIR -68 140 36 205 189 0 0 chr1 34131114 34131151 -248062513 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 265 128 0 0 chr1 34131164 34131203 -248062461 + 5S rRNA rRNA 1 39 -82 575 164 57 16 chr1 34131586 34131708 -248061956 + L2 LINE L2 3146 3272 0 357 302 89 22 chr1 34131926 34132105 -248061559 - MIR SINE MIR -54 208 18 785 153 12 55 chr1 34132107 34132270 -248061394 + MER41C LTR ERV1 1 156 -398 784 154 0 0 chr1 34132270 34132393 -248061271 + MER41A LTR ERV1 432 554 0 298 284 11 42 chr1 34133362 34133457 -248060207 - MIR SINE MIR -73 135 44 1727 172 7 17 chr1 34133555 34133851 -248059813 + AluJb SINE Alu 1 293 -19 1790 87 0 0 chr1 34133853 34134072 -248059592 + AluSx SINE Alu 1 219 -93 757 112 0 19 chr1 34134072 34134179 -248059485 + AluSg/x SINE Alu 186 290 -20 393 225 0 106 chr1 34134180 34134209 -248059455 - MIR SINE MIR -60 148 118 2299 96 21 0 chr1 34134209 34134500 -248059164 + AluSq SINE Alu 6 302 -11 393 225 0 106 chr1 34134500 34134612 -248059052 - MIR SINE MIR -90 118 22 424 155 0 24 chr1 34135376 34135460 -248058204 + AluJ/FRAM SINE Alu 225 306 -6 261 303 63 46 chr1 34135977 34136121 -248057543 + MIR SINE MIR 3 148 -62 213 335 153 18 chr1 34137546 34137716 -248055948 - MIR3 SINE MIR 0 208 16 275 345 167 0 chr1 34138603 34138771 -248054893 + MIR SINE MIR 46 241 -21 189 156 67 44 chr1 34138998 34139043 -248054621 + MIR SINE MIR 31 76 -132 244 287 263 34 chr1 34139333 34139526 -248054138 + MIR SINE MIR 3 249 -13 2133 119 17 3 chr1 34139526 34139819 -248053845 - AluSx SINE Alu -15 297 1 244 287 263 34 chr1 34139819 34139834 -248053830 + MIR SINE MIR 249 259 -3 227 121 0 0 chr1 34139832 34139865 -248053799 + MIR SINE MIR 54 86 -122 * 358 325 122 20 chr1 34142414 34142611 -248051053 + MIR SINE MIR 29 245 -17 201 282 0 0 chr1 34143346 34143385 -248050279 - L2 LINE L2 -30 3283 3245 261 242 128 67 chr1 34143425 34143546 -248050118 + MIR SINE MIR 87 220 -42 363 44 0 0 chr1 34143546 34143591 -248050073 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 242 128 67 chr1 34143591 34143618 -248050046 + MIR SINE MIR 220 244 -18 237 83 0 0 chr1 34145464 34145500 -248048164 + (TTC)n Simple_repeat Simple_repeat 2 37 0 894 167 0 0 chr1 34145683 34145815 -248047849 + FLAM_C SINE Alu 1 132 -1 1747 155 39 18 chr1 34145853 34146137 -248047527 - AluJb SINE Alu -22 290 1 525 48 0 0 chr1 34146165 34146227 -248047437 + AluY SINE Alu 2 63 -255 2540 80 0 0 chr1 34146392 34146692 -248046972 + AluY SINE Alu 1 300 -11 216 253 38 13 chr1 34146810 34146889 -248046775 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 474 278 26 20 chr1 34147613 34147764 -248045900 + MIR SINE MIR 11 162 -100 2022 128 0 4 chr1 34147765 34148088 -248045576 + AluSc SINE Alu 1 322 0 714 306 57 9 chr1 34148286 34148515 -248045149 + MIR SINE MIR 6 245 -17 315 243 108 36 chr1 34149024 34149135 -248044529 - MIR SINE MIR -110 152 34 2203 99 3 10 chr1 34149414 34149728 -248043936 + AluSp SINE Alu 9 313 0 1321 74 6 0 chr1 34149728 34149891 -248043773 + AluSp SINE Alu 134 297 -16 1933 146 6 37 chr1 34150320 34150641 -248043023 - AluSx SINE Alu -1 311 1 546 148 0 0 chr1 34150658 34150746 -248042918 + FLAM_A SINE Alu 49 136 -6 2514 247 96 57 chr1 34150746 34151821 -248041843 + L2 LINE L2 1894 3030 -283 2416 81 7 0 chr1 34151821 34152119 -248041545 + AluSp SINE Alu 1 300 -13 2514 247 96 57 chr1 34152119 34152414 -248041250 + L2 LINE L2 3030 3312 -1 247 321 139 0 chr1 34152408 34152545 -248041119 - L2 LINE L2 -429 2885 2730 * 236 337 0 11 chr1 34154144 34154233 -248039431 + L2 LINE L2 3226 3313 0 341 286 64 47 chr1 34154274 34154501 -248039163 + MIR SINE MIR 21 251 -11 2542 78 0 0 chr1 34154675 34154982 -248038682 - AluSx SINE Alu -5 307 1 624 170 0 19 chr1 34155362 34155468 -248038196 + AluJb SINE Alu 194 297 -15 3881 168 77 69 chr1 34155482 34157128 -248036536 + L1MB3 LINE L1 4195 5857 -326 1511 161 145 0 chr1 34157128 34157383 -248036281 + AluJo SINE Alu 1 292 -10 3881 168 77 69 chr1 34157383 34157713 -248035951 + L1MB3 LINE L1 5857 6183 0 614 288 119 45 chr1 34157742 34158115 -248035549 - L2 LINE L2 -866 2448 2047 1633 170 45 7 chr1 34158115 34158404 -248035260 - AluJo SINE Alu -12 300 1 182 303 118 13 chr1 34158431 34158507 -248035157 + MER5B DNA MER1_type 60 143 -35 281 331 49 31 chr1 34158559 34158722 -248034942 - L2 LINE L2 -739 2575 2410 2246 109 0 6 chr1 34158974 34159285 -248034379 + AluSx SINE Alu 2 310 -2 270 273 148 11 chr1 34159554 34159642 -248034022 + L2 LINE L2 3205 3304 -9 590 208 149 0 chr1 34159849 34160003 -248033661 + L1ME4a LINE L1 5512 5688 -433 612 263 81 51 chr1 34160016 34160242 -248033422 + L1ME4a LINE L1 5743 5984 -137 1736 144 72 7 chr1 34160242 34160520 -248033144 + AluSx SINE Alu 1 296 -16 612 263 81 51 chr1 34160520 34160628 -248033036 + L1ME4a LINE L1 5984 6087 -34 1002 171 0 59 chr1 34160642 34160829 -248032835 - FAM SINE Alu -2 47 1 445 271 102 12 chr1 34161545 34161711 -248031953 - MIR3 SINE MIR -11 197 17 1715 153 64 7 chr1 34161968 34162250 -248031414 + AluJb SINE Alu 1 298 -14 257 342 156 22 chr1 34163501 34163732 -248029932 + L2 LINE L2 2716 2977 -337 1924 120 149 40 chr1 34163913 34164289 -248029375 + MSTA LTR MaLR 1 417 -11 553 0 82 0 chr1 34164291 34164388 -248029276 + (TA)n Simple_repeat Simple_repeat 1 105 0 804 202 5 62 chr1 34164396 34164479 -248029185 - L1ME3A LINE L1 -49 6121 6035 2360 71 0 0 chr1 34164479 34164786 -248028878 + AluY SINE Alu 1 307 0 804 202 5 62 chr1 34164786 34164894 -248028770 - L1ME3A LINE L1 -135 6035 5940 1077 171 11 0 chr1 34164895 34165082 -248028582 + AluJb SINE Alu 120 308 -4 364 295 62 31 chr1 34165302 34165431 -248028233 + L2 LINE L2 2550 2682 -632 1740 147 31 21 chr1 34165653 34165780 -248027884 + AluJo SINE Alu 12 136 -176 2338 104 3 3 chr1 34165780 34166088 -248027576 + AluSp SINE Alu 1 308 -5 1740 147 31 21 chr1 34166088 34166246 -248027418 + AluJo SINE Alu 136 300 -12 2116 105 56 0 chr1 34166575 34166861 -248026803 + AluSx SINE Alu 1 302 -10 296 354 86 17 chr1 34166969 34167144 -248026520 + L2 LINE L2 2896 3082 -190 2476 133 3 6 chr1 34167173 34167511 -248026153 + MER1B DNA MER1_type 1 337 0 2096 115 7 3 chr1 34167590 34167878 -248025786 + AluSx SINE Alu 1 289 -23 371 329 70 35 chr1 34168092 34168320 -248025344 - MIR SINE MIR -24 238 3 188 299 185 76 chr1 34168803 34169014 -248024650 + MIR SINE MIR 14 247 -15 2473 66 7 0 chr1 34169344 34169645 -248024019 + AluSp SINE Alu 1 303 -10 1751 152 66 0 chr1 34169715 34170004 -248023660 + AluJb SINE Alu 3 310 -2 225 336 9 18 chr1 34170397 34170423 -248023241 - MIR SINE MIR -89 173 148 2133 114 0 37 chr1 34170423 34170747 -248022917 - AluSx SINE Alu 0 312 1 225 336 9 18 chr1 34170747 34170830 -248022834 - MIR SINE MIR -114 148 65 252 267 53 27 chr1 34171094 34171169 -248022495 - L2 LINE L2 -23 3290 3214 771 284 172 16 chr1 34171419 34171676 -248021988 + L2 LINE L2 2877 3211 -102 1644 163 3 51 chr1 34171676 34171989 -248021675 + AluJb SINE Alu 1 298 -14 771 284 172 16 chr1 34171989 34172104 -248021560 + L2 LINE L2 3211 3307 -6 1753 180 0 29 chr1 34172987 34173298 -248020366 + AluJb SINE Alu 1 302 -10 826 153 0 0 chr1 34173300 34173418 -248020246 + FLAM_C SINE Alu 1 118 -15 35 54 0 0 chr1 34173418 34173474 -248020190 + AT_rich Low_complexity Low_complexity 1 56 0 1324 150 0 5 chr1 34173672 34173872 -248019792 + AluSg/x SINE Alu 85 283 -29 219 103 0 0 chr1 34173875 34173914 -248019750 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr1 34174040 34174068 -248019596 + AT_rich Low_complexity Low_complexity 1 28 0 32 47 0 16 chr1 34174265 34174297 -248019367 + AT_rich Low_complexity Low_complexity 1 32 -31 1678 165 47 7 chr1 34174297 34174576 -248019088 + AluJo SINE Alu 2 291 -21 32 47 0 16 chr1 34174576 34174607 -248019057 + AT_rich Low_complexity Low_complexity 32 63 0 255 211 19 0 chr1 34175197 34175249 -248018415 - L2 LINE L2 0 3313 3261 468 0 0 0 chr1 34175571 34175623 -248018041 + (CA)n Simple_repeat Simple_repeat 1 52 0 315 0 0 0 chr1 34175622 34175657 -248018007 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 203 182 0 0 chr1 34176383 34176416 -248017248 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 2341 90 0 3 chr1 34176419 34176718 -248016946 - AluSg SINE Alu -11 299 2 208 71 71 0 chr1 34176728 34176770 -248016894 + T-rich Low_complexity Low_complexity 2 46 0 507 243 199 38 chr1 34176818 34177039 -248016625 + L1ME4a LINE L1 5717 5901 -220 1833 129 92 0 chr1 34177039 34177310 -248016354 + AluSx SINE Alu 1 296 -16 507 243 199 38 chr1 34177310 34177434 -248016230 + L1ME4a LINE L1 5901 6118 -3 31 0 0 0 chr1 34177434 34177465 -248016199 + AT_rich Low_complexity Low_complexity 1 31 0 473 242 0 0 chr1 34177645 34177744 -248015920 - L2 LINE L2 -1002 2312 2214 2319 98 0 0 chr1 34178051 34178346 -248015318 + AluSc SINE Alu 1 295 -14 2093 111 7 20 chr1 34178515 34178821 -248014843 + AluSx SINE Alu 1 302 -10 317 257 107 71 chr1 34180012 34180210 -248013454 - MIR SINE MIR -10 252 50 221 269 15 60 chr1 34180209 34180276 -248013388 - L2 LINE L2 0 3272 3209 * 266 256 96 48 chr1 34180357 34180482 -248013182 + L2 LINE L2 3179 3309 -4 474 168 89 192 chr1 34180742 34180945 -248012719 + MER21B LTR ERV1 13 194 -669 742 184 0 24 chr1 34180945 34181070 -248012594 - FLAM_A SINE Alu -15 127 6 447 240 192 112 chr1 34181074 34181361 -248012303 + MER21B LTR ERV1 180 489 -374 604 89 151 103 chr1 34181361 34181428 -248012236 - Tigger7 DNA MER2_type -63 2428 2366 1754 148 25 4 chr1 34181428 34181729 -248011935 - AluJb SINE Alu 0 307 1 604 89 151 103 chr1 34181729 34181806 -248011858 - Tigger7 DNA MER2_type -125 2366 2276 * 3224 143 57 30 chr1 34181797 34181954 -248011710 - Tigger7 DNA MER2_type -1906 581 430 922 169 16 27 chr1 34181954 34182137 -248011527 - L1PA16 LINE L1 -4 6162 5982 3224 143 57 30 chr1 34182137 34182545 -248011119 - Tigger7 DNA MER2_type -2057 430 1 1240 234 36 7 chr1 34182545 34182818 -248010846 + MER21B LTR ERV1 496 776 -87 248 241 0 0 chr1 34182823 34182877 -248010787 - MER3 DNA MER1_type -154 55 2 229 271 29 0 chr1 34183736 34183806 -248009858 - HAL1b LINE L1 -80 1268 1197 795 126 17 17 chr1 34183946 34184065 -248009599 - FRAM SINE Alu -8 168 50 6773 172 172 47 chr1 34184096 34185657 -248008007 - MER52A LTR ERV1 0 1755 1 708 191 0 0 chr1 34185659 34185769 -248007895 - FLAM_A SINE Alu -32 110 1 568 228 8 31 chr1 34185794 34185921 -248007743 + HsTC2 DNA Tc2 3 126 -1772 779 158 0 72 chr1 34186286 34186340 -248007324 - L1MD1 LINE L1 -20 6222 6166 2509 72 0 0 chr1 34186340 34186644 -248007020 + AluY SINE Alu 1 304 -7 779 158 0 72 chr1 34186644 34186741 -248006923 - L1MD1 LINE L1 -76 6166 6082 2472 216 79 82 chr1 34186741 34186941 -248006723 + MER21B LTR ERV1 1 200 -663 2179 124 0 0 chr1 34186941 34187239 -248006425 + AluSg SINE Alu 1 298 -12 2472 216 79 82 chr1 34187239 34187819 -248005845 + MER21B LTR ERV1 200 779 -84 1223 152 117 49 chr1 34187825 34188089 -248005575 - L1MD2 LINE L1 -158 6201 5920 * 4398 162 64 22 chr1 34188087 34188197 -248005467 + L1MB8 LINE L1 5221 5325 -853 1954 145 28 0 chr1 34188197 34188480 -248005184 + AluSx SINE Alu 4 294 -18 2420 108 32 40 chr1 34188486 34188864 -248004800 - THE1C LTR MaLR 0 375 1 4398 162 64 22 chr1 34188864 34189654 -248004010 + L1MB8 LINE L1 5329 6168 -10 911 121 6 55 chr1 34189656 34189821 -248003843 - L1MD2 LINE L1 -307 5935 5779 367 300 61 9 chr1 34190156 34190270 -248003394 + MIR3 SINE MIR 1 117 -110 184 293 17 17 chr1 34190505 34190563 -248003101 - MIR SINE MIR -89 119 62 375 77 0 0 chr1 34190675 34190727 -248002937 + Alu SINE Alu 249 300 -1 361 217 33 50 chr1 34191019 34191139 -248002525 + MIR SINE MIR 97 214 -48 579 201 75 58 chr1 34191732 34191906 -248001758 - MIR SINE MIR -78 184 8 4195 82 0 4 chr1 34191931 34192444 -248001220 + MER9 LTR ERVK 1 511 0 193 214 95 36 chr1 34192444 34192528 -248001136 - MIR SINE MIR -83 179 91 658 265 39 15 chr1 34192875 34193125 -248000539 - MLT1I LTR MaLR -8 401 59 1132 260 64 12 chr1 34193164 34193491 -248000173 + MLT1I LTR MaLR 66 409 0 1132 139 0 0 chr1 34193557 34193722 -247999942 + AluSg/x SINE Alu 133 297 -13 6000 98 5 9 chr1 34193800 34194809 -247998855 + L1MA2 LINE L1 5053 6059 -245 2010 58 12 0 chr1 34194806 34195063 -247998601 + L1PA8A LINE L1 5300 5559 -572 * 1990 98 0 0 chr1 34195063 34195318 -247998346 - THE1B LTR MaLR -109 255 1 1005 176 12 0 chr1 34197548 34197713 -247995951 - AluSg/x SINE Alu -9 301 135 2188 114 7 0 chr1 34197978 34198267 -247995397 - AluSx SINE Alu -21 291 1 2226 119 80 14 chr1 34198342 34198694 -247994970 - THE1C LTR MaLR 0 375 1 262 300 36 27 chr1 34199400 34199510 -247994154 + L1MC5 LINE L1 7269 7379 -582 387 335 62 11 chr1 34199599 34199859 -247993805 + L1MC4 LINE L1 7615 7887 -155 1072 139 37 74 chr1 34199859 34200074 -247993590 - AluSq SINE Alu -10 303 97 2351 84 0 3 chr1 34200196 34200493 -247993171 + AluY SINE Alu 1 296 -15 765 160 0 0 chr1 34200493 34200618 -247993046 + L1MB3 LINE L1 6057 6181 -2 4151 45 38 0 chr1 34201568 34202040 -247991624 + LTR2B LTR ERV1 1 490 0 209 229 66 16 chr1 34202143 34202204 -247991460 - MIR SINE MIR -64 144 81 305 302 32 21 chr1 34202472 34202661 -247991003 - L1ME2 LINE L1 -212 5952 5762 1442 147 0 92 chr1 34202662 34202968 -247990696 - Tigger2a DNA MER2_type -155 279 2 1277 211 34 49 chr1 34202986 34203393 -247990271 - L1M4 LINE L1 -3475 2671 2271 439 148 23 0 chr1 34203393 34203481 -247990183 + CT-rich Low_complexity Low_complexity 1 90 0 696 189 0 0 chr1 34203501 34203607 -247990057 - FLAM_A SINE Alu -36 106 1 308 264 160 28 chr1 34203652 34203796 -247989868 - L1ME2 LINE L1 -2083 5725 5563 1023 87 0 0 chr1 34203872 34203999 -247989665 - AluSg SINE Alu -179 131 5 4003 90 0 25 chr1 34204028 34204552 -247989112 - MER9 LTR ERVK 0 511 1 268 302 72 7 chr1 34204594 34204733 -247988931 - L1M4 LINE L1 -3524 2622 2475 426 219 0 0 chr1 34204820 34204902 -247988762 + MER81 DNA DNA 1 82 -32 901 237 18 9 chr1 34205093 34205317 -247988347 + Charlie4 DNA MER1_type 7 232 -1729 439 256 43 62 chr1 34205532 34205743 -247987921 + Charlie4 DNA MER1_type 1645 1851 -110 1440 128 5 0 chr1 34205743 34205947 -247987717 - AluSg/x SINE Alu -21 291 87 795 193 0 0 chr1 34206095 34206214 -247987450 + FLAM_C SINE Alu 1 119 -14 390 214 19 39 chr1 34206231 34206334 -247987330 + Charlie4 DNA MER1_type 1861 1961 0 28 0 0 0 chr1 34206356 34206384 -247987280 + AT_rich Low_complexity Low_complexity 1 28 0 295 325 81 51 chr1 34206384 34206581 -247987083 + L2 LINE L2 3100 3302 -11 5164 181 92 6 chr1 34206596 34207662 -247986002 + L1PBa LINE L1 6 1163 -5700 9573 149 44 6 chr1 34207670 34209946 -247983718 + L1PBa LINE L1 1321 3507 -3355 2517 75 31 39 chr1 34209946 34210262 -247983402 + THE1A LTR MaLR 1 315 -40 2204 125 0 3 chr1 34210262 34210565 -247983099 - AluSg SINE Alu -8 302 1 2517 75 31 39 chr1 34210565 34210606 -247983058 + THE1A LTR MaLR 315 355 0 11389 105 14 1 chr1 34210606 34212166 -247981498 + THE1A-int LTR MaLR 1 1580 0 2624 98 0 8 chr1 34212166 34212524 -247981140 + THE1A LTR MaLR 1 355 0 9573 149 44 6 chr1 34212524 34212990 -247980674 + L1PBa LINE L1 3506 4171 -2691 2931 141 26 64 chr1 34212990 34213556 -247980108 + LTR10A LTR ERV1 1 545 -64 1044 234 62 4 chr1 34213575 34213848 -247979816 + LTR10A-int LTR ERV1 1 289 -6360 2319 122 31 6 chr1 34213979 34214339 -247979325 + LTR10A-int LTR ERV1 653 1021 -5628 * 4368 93 6 22 chr1 34214323 34214966 -247978698 + LTR10A-int LTR ERV1 1234 1866 -4783 348 181 0 0 chr1 34215010 34215093 -247978571 + GA-rich Low_complexity Low_complexity 2 84 0 311 186 49 39 chr1 34215094 34215196 -247978468 + LTR10A-int LTR ERV1 1852 1954 -4695 * 2448 173 69 63 chr1 34215186 34215581 -247978083 + LTR10A-int LTR ERV1 2206 2597 -4677 2334 99 0 0 chr1 34215581 34215874 -247977790 + AluY SINE Alu 1 293 -18 2448 173 69 63 chr1 34215874 34216159 -247977505 + LTR10A-int LTR ERV1 2597 3317 -3957 * 4177 185 23 34 chr1 34216139 34216408 -247977256 + LTR10A-int LTR ERV1 953 1223 -5426 2456 83 0 0 chr1 34216408 34216710 -247976954 + AluY SINE Alu 1 302 -9 4177 185 23 34 chr1 34216710 34217569 -247976095 + LTR10A-int LTR ERV1 1223 3554 -3095 3709 102 30 42 chr1 34217604 34218239 -247975425 - LTR10E LTR ERV1 -6 627 1 29462 239 37 38 chr1 34218242 34225553 -247968111 - HERVI LTR ERV1 -1 7784 466 2327 91 0 0 chr1 34225553 34225840 -247967824 + AluY SINE Alu 1 287 -24 29462 239 37 38 chr1 34225840 34225853 -247967811 - HERVI LTR ERV1 -7319 466 454 231 61 0 0 chr1 34225853 34225886 -247967778 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 29462 239 37 38 chr1 34225886 34226328 -247967336 - HERVI LTR ERV1 -7331 454 26 3524 102 45 58 chr1 34226355 34226975 -247966689 - LTR10E LTR ERV1 -21 612 1 252 61 0 0 chr1 34226975 34227008 -247966656 + Harlequin LTR ERV1 1688 1720 -5176 323 226 151 32 chr1 34227010 34227103 -247966561 - LTR8 LTR ERV1 -438 253 150 4975 78 25 1 chr1 34227108 34227835 -247965829 + Harlequin LTR ERV1 1833 2576 -4320 * 13038 206 38 57 chr1 34227813 34230821 -247962843 + Harlequin LTR ERV1 3694 6646 -3 3067 135 22 77 chr1 34230822 34231409 -247962255 + LTR10A LTR ERV1 1 555 -54 9216 162 15 6 chr1 34231419 34232567 -247961097 + L1PB1 LINE L1 3451 4587 -1564 2617 59 0 7 chr1 34232567 34232874 -247960790 - AluY SINE Alu -6 305 1 9216 162 15 6 chr1 34232874 34234400 -247959264 + L1PB1 LINE L1 4587 6150 -1 408 276 21 14 chr1 34234559 34234704 -247958960 + MIR SINE MIR 117 262 0 611 302 19 23 chr1 34234787 34235002 -247958662 + MLT1L LTR MaLR 402 615 0 202 302 87 40 chr1 34235034 34235105 -247958559 - L2 LINE L2 -4 3268 3187 1784 133 73 28 chr1 34235105 34235391 -247958273 + AluSx SINE Alu 1 299 -13 202 302 87 40 chr1 34235391 34235445 -247958219 - L2 LINE L2 -85 3187 3137 226 301 55 0 chr1 34235530 34235603 -247958061 + LTR67 LTR ERVL 118 194 -363 266 254 0 14 chr1 34235964 34236035 -247957629 + MLT1L LTR MaLR 546 615 0 530 284 113 5 chr1 34236329 34236523 -247957141 - MIR SINE MIR -7 255 41 670 163 15 37 chr1 34236683 34236818 -247956846 + FLAM_A SINE Alu 2 133 0 287 268 87 16 chr1 34236821 34236948 -247956716 + MIR SINE MIR 1 136 -126 307 276 22 45 chr1 34237048 34237124 -247956540 - MIR3 SINE MIR -68 140 67 2283 117 3 0 chr1 34237124 34237432 -247956232 + AluSq SINE Alu 1 309 -4 307 276 22 45 chr1 34237432 34237489 -247956175 - MIR3 SINE MIR -141 67 10 274 352 8 16 chr1 34237717 34237845 -247955819 - MIR3 SINE MIR -6 202 76 2016 139 0 4 chr1 34238047 34238328 -247955336 + AluSx SINE Alu 1 280 -32 309 51 0 0 chr1 34238328 34238367 -247955297 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 277 276 58 12 chr1 34238764 34238895 -247954769 - MIR SINE MIR -73 135 20 186 327 0 0 chr1 34239296 34239351 -247954313 - L2 LINE L2 -82 3190 3136 1686 101 0 0 chr1 34239483 34239690 -247953974 + AluSx SINE Alu 1 207 -105 367 113 0 0 chr1 34239690 34239743 -247953921 + AluSx SINE Alu 241 293 -7 263 307 122 0 chr1 34239800 34239929 -247953735 + MIR SINE MIR 9 153 -66 2255 108 7 3 chr1 34240285 34240592 -247953072 + AluSx SINE Alu 1 308 -4 1866 135 40 13 chr1 34241078 34241381 -247952283 + AluJb SINE Alu 1 311 -1 2134 94 20 44 chr1 34241383 34241680 -247951984 + AluSq SINE Alu 1 290 -23 594 262 48 63 chr1 34241755 34242007 -247951657 - MIR SINE MIR -6 256 9 346 298 69 8 chr1 34242028 34242159 -247951505 - L2 LINE L2 0 3272 3134 1324 158 69 133 chr1 34242294 34242655 -247951009 - MLT1A1 LTR MaLR 0 365 28 * 1344 157 103 97 chr1 34242645 34242996 -247950668 + MLT1A1 LTR MaLR 11 363 -2 231 284 42 21 chr1 34242996 34243091 -247950573 - L2 LINE L2 -319 2953 2857 787 143 0 57 chr1 34243225 34243365 -247950299 + FLAM_C SINE Alu 1 132 -1 357 339 137 37 chr1 34243378 34243682 -247949982 - L2 LINE L2 -613 2701 2346 1762 188 112 0 chr1 34243682 34244038 -247949626 - MSTD LTR MaLR 0 396 1 357 339 137 37 chr1 34244038 34244134 -247949530 - L2 LINE L2 -968 2346 2261 628 216 83 62 chr1 34244759 34244838 -247948826 - MIR SINE MIR -10 252 176 1766 148 21 3 chr1 34244838 34245128 -247948536 + AluSg SINE Alu 1 295 -15 628 216 83 62 chr1 34245128 34245289 -247948375 - MIR SINE MIR -86 176 7 249 194 30 15 chr1 34245559 34245626 -247948038 - L1ME LINE L1 -317 5804 5737 314 246 0 0 chr1 34245629 34245698 -247947966 - MER5A DNA MER1_type -89 100 32 199 180 20 40 chr1 34245730 34245780 -247947884 - MIR3 SINE MIR -36 172 124 230 182 23 80 chr1 34246162 34246250 -247947414 + LTR67 LTR ERVL 475 557 0 2284 99 7 3 chr1 34246575 34246879 -247946785 + AluSx SINE Alu 1 305 -7 1087 115 39 0 chr1 34246881 34247037 -247946627 + AluSg/x SINE Alu 136 297 -15 1711 153 28 17 chr1 34247185 34247314 -247946350 + AluJo SINE Alu 1 127 -185 2376 96 0 0 chr1 34247314 34247615 -247946049 + AluSc SINE Alu 1 301 -8 1711 153 28 17 chr1 34247615 34247773 -247945891 + AluJo SINE Alu 127 291 -21 2778 168 30 39 chr1 34247814 34248321 -247945343 + Tigger7 DNA MER2_type 1 502 -1985 776 176 0 40 chr1 34248571 34248719 -247944945 + FLAM_C SINE Alu 2 143 0 1928 142 3 38 chr1 34248723 34249039 -247944625 + AluJb SINE Alu 1 305 -7 2349 92 0 0 chr1 34249417 34249709 -247943955 + AluY SINE Alu 1 292 -19 1889 127 6 48 chr1 34249727 34250041 -247943623 + AluSq SINE Alu 1 301 -12 564 221 84 0 chr1 34250457 34250611 -247943053 + L1MC4 LINE L1 7732 7898 -144 1769 156 13 27 chr1 34251017 34251318 -247942346 - AluJb SINE Alu -15 297 1 1677 144 69 36 chr1 34251367 34251728 -247941936 + THE1C LTR MaLR 3 375 0 2241 126 0 0 chr1 34252067 34252368 -247941296 - AluSx SINE Alu -11 301 1 341 226 64 166 chr1 34252744 34252979 -247940685 - MIR SINE MIR -1 261 51 2413 93 10 0 chr1 34253358 34253660 -247940004 - AluSq SINE Alu -8 305 1 1798 179 10 0 chr1 34253954 34254250 -247939414 + AluJb SINE Alu 1 299 -13 247 330 90 11 chr1 34254355 34254543 -247939121 + L2 LINE L2 925 1127 -2187 875 304 183 33 chr1 34255128 34255596 -247938068 + L2 LINE L2 1751 2147 -1125 180 0 0 0 chr1 34255596 34255616 -247938048 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 875 304 183 33 chr1 34255616 34255629 -247938035 + L2 LINE L2 2147 2157 -1115 2173 124 3 0 chr1 34255629 34255936 -247937728 + AluSx SINE Alu 1 308 -4 875 304 183 33 chr1 34255936 34256600 -247937064 + L2 LINE L2 2157 3063 -209 235 269 77 0 chr1 34256652 34256730 -247936934 + L2 LINE L2 3172 3255 -58 308 49 24 0 chr1 34258355 34258396 -247935268 - AluY SINE Alu -261 42 1 1059 127 0 0 chr1 34258430 34258605 -247935059 + AluSg/x SINE Alu 137 311 0 2158 126 3 7 chr1 34258796 34259106 -247934558 + AluSx SINE Alu 1 309 -3 1690 182 39 0 chr1 34259183 34259463 -247934201 + AluJo SINE Alu 1 291 -21 2087 129 3 0 chr1 34260686 34260973 -247932691 - AluSx SINE Alu -24 288 1 1140 203 79 12 chr1 34261402 34261643 -247932021 - AluJo SINE Alu -55 257 1 436 261 147 78 chr1 34261655 34261753 -247931911 - L1ME4a LINE L1 -5 6116 6026 2309 99 3 0 chr1 34261753 34262047 -247931617 - AluSp SINE Alu -18 295 1 436 261 147 78 chr1 34262047 34262147 -247931517 - L1ME4a LINE L1 -95 6026 5934 2528 77 0 3 chr1 34262147 34262458 -247931206 - AluY SINE Alu -1 310 1 436 261 147 78 chr1 34262458 34262565 -247931099 - L1ME4a LINE L1 -187 5934 5789 770 178 0 15 chr1 34262720 34262855 -247930809 + FLAM_A SINE Alu 1 133 0 1760 168 55 7 chr1 34262895 34263186 -247930478 + AluJo SINE Alu 1 305 -7 2369 70 25 0 chr1 34264023 34264308 -247929356 + AluY SINE Alu 1 292 -19 258 284 241 15 chr1 34264477 34264631 -247929033 - MER5A DNA MER1_type -3 175 1 246 206 63 16 chr1 34264643 34264706 -247928958 - MIR SINE MIR -115 147 82 1215 151 0 0 chr1 34264868 34265040 -247928624 - AluSg/x SINE Alu -7 305 134 2058 128 14 0 chr1 34265040 34265336 -247928328 - AluSq SINE Alu -13 300 1 1095 210 186 27 chr1 34266702 34267078 -247926586 + L1MC4 LINE L1 6463 6898 -1144 581 283 90 13 chr1 34267081 34267515 -247926149 + L1MC4 LINE L1 7274 7661 -147 2069 115 17 14 chr1 34267515 34267811 -247925853 + AluSq SINE Alu 1 297 -16 581 283 90 13 chr1 34267811 34267869 -247925795 + L1MC4 LINE L1 7661 7713 -95 1882 105 8 8 chr1 34268604 34268871 -247924793 + AluSx SINE Alu 1 267 -45 1451 155 17 13 chr1 34268873 34269112 -247924552 - AluJb SINE Alu -72 240 1 809 187 0 0 chr1 34269113 34269268 -247924396 - L1M4 LINE L1 -1104 5540 5386 * 2555 220 73 100 chr1 34269256 34269446 -247924218 - L1M4 LINE L1 -5421 1121 927 2161 132 0 0 chr1 34269446 34269733 -247923931 - AluSx SINE Alu -25 287 1 2555 220 73 100 chr1 34269733 34270078 -247923586 - L1M4 LINE L1 -5615 927 574 2076 132 0 0 chr1 34270078 34270358 -247923306 + AluSx SINE Alu 1 280 -32 939 29 22 22 chr1 34270360 34270499 -247923165 + (TAGA)n Simple_repeat Simple_repeat 1 139 0 2555 220 73 100 chr1 34270499 34270532 -247923132 - L1M4 LINE L1 -5969 573 541 498 17 0 0 chr1 34270532 34270591 -247923073 + (TAGA)n Simple_repeat Simple_repeat 1 59 0 2555 220 73 100 chr1 34270591 34271165 -247922499 - L1M4 LINE L1 -6001 541 5 344 279 172 27 chr1 34271935 34272197 -247921467 + L2 LINE L2 2452 2751 -563 1136 261 69 37 chr1 34272197 34272499 -247921165 + L1ME LINE L1 4809 5100 -1070 2245 117 0 13 chr1 34272499 34272826 -247920838 + AluSq SINE Alu 3 313 0 1136 261 69 37 chr1 34272826 34273147 -247920517 + L1ME LINE L1 5100 5460 -710 198 333 102 32 chr1 34273189 34273375 -247920289 + L2 LINE L2 3115 3313 0 269 250 50 0 chr1 34273381 34273461 -247920203 - MIR SINE MIR -95 167 84 2749 165 15 10 chr1 34273861 34274063 -247919601 + L1MB5 LINE L1 5629 5828 -346 2434 79 0 35 chr1 34274063 34274381 -247919283 + AluY SINE Alu 1 307 -4 2749 165 15 10 chr1 34274381 34274700 -247918964 + L1MB5 LINE L1 5828 6153 -21 309 185 0 0 chr1 34274849 34274914 -247918750 + (TG)n Simple_repeat Simple_repeat 1 65 0 313 278 48 40 chr1 34275081 34275207 -247918457 - MIR SINE MIR -60 148 22 183 330 26 52 chr1 34275586 34275665 -247917999 - MIR SINE MIR -132 130 53 2378 157 96 12 chr1 34275665 34276144 -247917520 + LTR44 LTR ERV1 1 519 0 183 330 26 52 chr1 34276144 34276179 -247917485 - MIR SINE MIR -209 53 19 620 299 56 22 chr1 34276202 34276433 -247917231 + MIR SINE MIR 21 259 -3 1489 249 62 62 chr1 34276604 34277110 -247916554 + MER77 LTR ERV1 119 673 -5 1437 104 9 55 chr1 34277118 34277338 -247916326 + AluSg/x SINE Alu 86 295 -15 798 169 0 22 chr1 34277353 34277489 -247916175 + FLAM_C SINE Alu 1 133 0 325 280 175 20 chr1 34277631 34277831 -247915833 - MIR SINE MIR -31 231 1 254 250 40 0 chr1 34278012 34278088 -247915576 - MER102a DNA MER1_type 0 330 252 2035 146 20 3 chr1 34278155 34278456 -247915208 - AluJo SINE Alu -6 306 1 254 308 134 29 chr1 34278886 34279058 -247914606 - L2 LINE L2 -3 3310 3121 481 273 0 37 chr1 34279058 34279219 -247914445 + AluJo SINE Alu 89 243 -69 214 219 62 0 chr1 34280537 34280601 -247913063 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 356 264 74 43 chr1 34280719 34280882 -247912782 - MLT1L LTR MaLR -2 613 446 1922 114 7 39 chr1 34280882 34281039 -247912625 - AluJb SINE Alu -24 288 127 2278 73 7 0 chr1 34281039 34281313 -247912351 - AluY SINE Alu -17 294 19 2376 101 7 0 chr1 34281317 34281623 -247912041 - AluSg SINE Alu -2 308 1 1922 114 7 39 chr1 34281623 34281740 -247911924 - AluJb SINE Alu -188 124 18 311 292 10 10 chr1 34281807 34281903 -247911761 - MLT1L LTR MaLR -165 450 355 295 242 38 23 chr1 34282439 34282571 -247911093 + GA-rich Low_complexity Low_complexity 5 138 0 2191 91 6 69 chr1 34283010 34283330 -247910334 + AluSx SINE Alu 1 300 -12 232 308 50 39 chr1 34283719 34283901 -247909763 + L2 LINE L2 2725 2908 -406 239 333 48 43 chr1 34284266 34284473 -247909191 - MIR SINE MIR -41 221 14 691 253 16 46 chr1 34287004 34287244 -247906420 + MIR SINE MIR 30 262 0 439 209 0 12 chr1 34288162 34288248 -247905416 - FRAM/FAM SINE Alu -96 80 1 1001 161 143 90 chr1 34288256 34288535 -247905129 - AluJo SINE Alu -18 294 1 903 214 11 6 chr1 34288538 34288720 -247904944 - MIR SINE MIR -46 216 34 318 259 147 0 chr1 34288838 34288954 -247904710 - MIR SINE MIR -110 152 20 2210 133 0 13 chr1 34290426 34290734 -247902930 + AluSx SINE Alu 1 304 -8 418 143 0 0 chr1 34290740 34290803 -247902861 + AluS SINE Alu 2 64 -247 1042 118 0 0 chr1 34290805 34290949 -247902715 + AluSg/x SINE Alu 169 312 0 527 176 143 0 chr1 34290963 34291082 -247902582 + MIR SINE MIR 21 156 -106 354 267 0 0 chr1 34291150 34291225 -247902439 + L2 LINE L2 3235 3309 -4 238 164 55 41 chr1 34291225 34291298 -247902366 + MIR SINE MIR 73 146 -62 371 303 124 5 chr1 34291616 34291834 -247901830 - MIR SINE MIR 0 262 19 241 312 43 0 chr1 34293633 34293726 -247899938 + MIR SINE MIR 47 143 -65 424 296 51 34 chr1 34294341 34294517 -247899147 + MER5A DNA MER1_type 1 179 -10 200 297 108 0 chr1 34295202 34295276 -247898388 - MIR SINE MIR -148 114 33 434 252 61 0 chr1 34295372 34295487 -247898177 + MIR SINE MIR 67 188 -74 375 315 146 5 chr1 34295490 34295703 -247897961 + L2 LINE L2 3067 3309 -4 357 309 136 0 chr1 34296086 34296277 -247897387 - L2 LINE L2 -83 3230 3014 694 125 0 0 chr1 34296281 34296385 -247897279 + FLAM_C SINE Alu 2 105 -38 2378 119 0 0 chr1 34296511 34296822 -247896842 - AluJb SINE Alu -1 311 1 24 32 0 0 chr1 34296822 34296853 -247896811 + AT_rich Low_complexity Low_complexity 1 31 0 320 318 127 12 chr1 34296853 34297165 -247896499 - L2 LINE L2 -250 3022 2685 2162 136 0 48 chr1 34297494 34297848 -247895816 - MER1B DNA MER1_type 0 337 1 435 255 10 0 chr1 34297883 34297981 -247895683 - MIR SINE MIR -110 152 54 536 264 127 14 chr1 34297995 34298207 -247895457 - MIR SINE MIR -6 256 21 1051 143 0 0 chr1 34298825 34298979 -247894685 - AluJb SINE Alu -25 287 134 2184 134 0 10 chr1 34298979 34299293 -247894371 - AluJb SINE Alu -1 311 1 27 73 0 0 chr1 34299438 34299493 -247894171 + AT_rich Low_complexity Low_complexity 1 55 0 259 352 93 0 chr1 34299523 34299705 -247893959 + L1ME4a LINE L1 5723 5921 -200 399 259 93 7 chr1 34299836 34299975 -247893689 - L3 LINE CR1 -10 1567 1417 2017 135 7 0 chr1 34300166 34300448 -247893216 + AluSx SINE Alu 3 286 -26 189 0 0 0 chr1 34300451 34300472 -247893192 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2716 117 82 21 chr1 34300479 34300680 -247892984 + L1MB3 LINE L1 5631 5818 -365 2422 105 0 6 chr1 34300680 34300994 -247892670 + AluSx SINE Alu 1 312 0 2716 117 82 21 chr1 34300994 34301307 -247892357 + L1MB3 LINE L1 5818 6176 -7 297 344 82 41 chr1 34301435 34301679 -247891985 - L2 LINE L2 -469 2845 2592 2267 102 3 0 chr1 34301819 34302139 -247891525 + AluSx SINE Alu 1 321 0 407 176 19 65 chr1 34302372 34302480 -247891184 + MIR3 SINE MIR 52 154 -54 471 248 107 0 chr1 34302710 34302859 -247890805 - MIR SINE MIR -70 192 28 523 225 42 21 chr1 34303200 34303342 -247890322 + MIR SINE MIR 60 204 -58 274 294 56 48 chr1 34303696 34303822 -247889842 + MIR3 SINE MIR 14 140 -68 191 279 289 0 chr1 34303958 34304062 -247889602 - MIR SINE MIR -20 242 109 195 129 0 0 chr1 34304269 34304300 -247889364 + (CA)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr1 34304425 34304446 -247889218 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 306 0 0 0 chr1 34304445 34304479 -247889185 + (CA)n Simple_repeat Simple_repeat 1 34 0 215 235 0 39 chr1 34304606 34304657 -247889007 + G-rich Low_complexity Low_complexity 6 54 0 195 129 0 0 chr1 34304994 34305025 -247888639 + (CGGA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr1 34305556 34305585 -247888079 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 34305653 34305683 -247887981 + GC_rich Low_complexity Low_complexity 1 30 0 204 109 0 65 chr1 34305704 34305750 -247887914 + (CCCCG)n Simple_repeat Simple_repeat 5 47 0 194 279 0 58 chr1 34305998 34306084 -247887580 + L2 LINE L2 3191 3271 -1 351 179 115 0 chr1 34306088 34306166 -247887498 + MIR SINE MIR 90 176 -86 1205 132 0 0 chr1 34306213 34306380 -247887284 - FRAM SINE Alu -11 165 1 2093 154 0 10 chr1 34306873 34307184 -247886480 - AluJo SINE Alu -3 309 2 283 176 88 77 chr1 34307414 34307505 -247886159 - MIR SINE MIR -72 190 99 258 261 81 18 chr1 34307737 34307848 -247885816 + L2 LINE L2 3152 3269 -3 290 262 43 71 chr1 34308459 34308600 -247885064 + MIR SINE MIR 76 212 -50 191 209 23 0 chr1 34308713 34308756 -247884908 + MIR SINE MIR 79 122 -140 498 242 105 97 chr1 34309351 34309599 -247884065 - MIR SINE MIR -4 258 9 239 264 28 0 chr1 34309940 34310012 -247883652 - L2 LINE L2 -53 3219 3146 290 298 0 10 chr1 34310553 34310657 -247883007 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 312 298 35 0 chr1 34310660 34310774 -247882890 + L1MC4 LINE L1 7924 8041 -1 2498 67 3 3 chr1 34311092 34311392 -247882272 + AluSp SINE Alu 1 300 -13 295 299 88 15 chr1 34311859 34311996 -247881668 - MIR3 SINE MIR -58 150 4 366 215 157 41 chr1 34312147 34312268 -247881396 + MIR SINE MIR 18 152 -56 1904 154 13 10 chr1 34312269 34312580 -247881084 + AluJb SINE Alu 1 312 0 539 316 87 4 chr1 34312749 34312980 -247880684 + MIR SINE MIR 13 262 0 1421 140 4 0 chr1 34313554 34313783 -247879881 + L1MB3 LINE L1 5781 6010 -173 1243 149 5 5 chr1 34313783 34313978 -247879686 + AluSp SINE Alu 117 311 -2 864 159 0 0 chr1 34313983 34314109 -247879555 + FLAM_C SINE Alu 1 126 -17 884 224 0 0 chr1 34314601 34314780 -247878884 + AluSq SINE Alu 118 296 -17 2822 117 40 46 chr1 34314781 34315229 -247878435 + L1MA8 LINE L1 5767 6216 -75 212 0 36 0 chr1 34315229 34315257 -247878407 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1896 150 0 0 chr1 34315260 34315540 -247878124 - AluJb SINE Alu -32 280 1 2822 117 40 46 chr1 34315540 34315608 -247878056 + L1MA8 LINE L1 6218 6284 -7 279 241 58 11 chr1 34315652 34315739 -247877925 - MIR3 SINE MIR -47 161 71 272 319 11 32 chr1 34315943 34316037 -247877627 + L2 LINE L2 3161 3252 -20 2375 119 0 0 chr1 34316056 34316368 -247877296 + AluSx SINE Alu 1 312 0 24 0 0 0 chr1 34316454 34316478 -247877186 + AT_rich Low_complexity Low_complexity 1 24 0 2011 135 0 7 chr1 34316478 34316767 -247876897 - AluSx SINE Alu -25 287 1 307 238 0 12 chr1 34316794 34316878 -247876786 - L1ME4a LINE L1 -207 5914 5832 632 245 21 7 chr1 34317021 34317164 -247876500 - L2 LINE L2 -10 3303 3159 12916 35 0 0 chr1 34317357 34319498 -247874166 - L1PA5 LINE L1 -222 5932 3791 936 37 0 0 chr1 34319499 34319606 -247874058 - U6 snRNA snRNA 0 107 1 1530 175 14 18 chr1 34319616 34319896 -247873768 - L1MB7 LINE L1 0 6184 5906 24 32 0 0 chr1 34319897 34319928 -247873736 + AT_rich Low_complexity Low_complexity 1 31 0 262 302 75 28 chr1 34320193 34320236 -247873428 - L2 LINE L2 0 3272 3232 1968 118 16 33 chr1 34320236 34320541 -247873123 - AluJb SINE Alu -12 300 1 262 302 75 28 chr1 34320541 34320603 -247873061 - L2 LINE L2 -40 3232 3162 216 286 19 9 chr1 34321144 34321249 -247872415 + (TG)n Simple_repeat Simple_repeat 1 106 0 995 262 119 29 chr1 34321251 34321637 -247872027 - LTR16C LTR ERVL 0 491 71 361 293 40 13 chr1 34321930 34322080 -247871584 + MIR SINE MIR 96 249 -13 277 238 0 24 chr1 34323037 34323121 -247870543 + (TG)n Simple_repeat Simple_repeat 1 82 0 584 230 39 146 chr1 34323178 34323508 -247870156 + MER102b DNA MER1_type 47 341 0 378 111 74 19 chr1 34324487 34324595 -247869069 + T-rich Low_complexity Low_complexity 5 118 0 2035 151 0 3 chr1 34324615 34324914 -247868750 - AluJb SINE Alu -6 306 9 510 240 60 60 chr1 34325242 34325442 -247868222 + MIR SINE MIR 2 201 -61 456 269 10 0 chr1 34325938 34326042 -247867622 - MER81 DNA DNA -1 113 9 1017 130 113 113 chr1 34326589 34326873 -247866791 - LTR10A LTR ERV1 -318 291 8 419 176 0 55 chr1 34326878 34326969 -247866695 + FLAM_C SINE Alu 53 138 -5 593 268 132 4 chr1 34326971 34327199 -247866465 - MLT1C LTR MaLR -57 410 154 282 322 16 8 chr1 34327361 34327482 -247866182 + L2 LINE L2 2222 2343 -971 2241 120 7 0 chr1 34327881 34328180 -247865484 - AluSx SINE Alu -11 301 1 4746 108 49 9 chr1 34328281 34329030 -247864634 - MER52C LTR ERV1 0 1278 500 393 235 11 95 chr1 34329352 34329531 -247864133 + MER69A DNA AcHobo 1 164 -13 228 250 138 0 chr1 34329703 34329783 -247863881 + MIR SINE MIR 63 153 -109 2465 155 30 128 chr1 34330495 34330542 -247863122 + Tigger1 DNA MER2_type 1 51 -2367 224 29 0 29 chr1 34330542 34330576 -247863088 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2465 155 30 128 chr1 34330576 34330773 -247862891 + Tigger1 DNA MER2_type 51 266 -2152 393 22 0 0 chr1 34330773 34330819 -247862845 + (TTTCC)n Simple_repeat Simple_repeat 3 48 0 1619 167 11 39 chr1 34330823 34331105 -247862559 - AluSx SINE Alu -38 274 1 2465 155 30 128 chr1 34331105 34331512 -247862152 + Tigger1 DNA MER2_type 269 594 -1824 627 272 99 5 chr1 34331513 34331704 -247861960 - MIR SINE MIR -46 216 8 352 267 35 0 chr1 34331711 34331797 -247861867 + MIR SINE MIR 79 167 -95 2998 96 2 5 chr1 34332107 34332526 -247861138 - LTR1 LTR ERV1 0 785 368 4946 61 2 0 chr1 34332526 34333163 -247860501 + HERVL-A1 LTR ERVL 5017 5654 0 3190 61 21 7 chr1 34333167 34333594 -247860070 + MLT2A1 LTR ERVL 5 437 -7 2052 150 0 0 chr1 34333696 34333990 -247859674 - AluSx SINE Alu -18 294 1 247 321 28 18 chr1 34334147 34334256 -247859408 - L1MC4a LINE L1 -455 7353 7244 * 848 232 59 29 chr1 34334253 34334546 -247859118 - L1MC4 LINE L1 -727 7234 6957 507 272 121 27 chr1 34334575 34334799 -247858865 + MLT1J2 LTR MaLR 202 446 -4 2228 115 3 13 chr1 34334817 34335131 -247858533 - AluSq SINE Alu -2 311 1 373 218 64 32 chr1 34335132 34335320 -247858344 - HAL1 LINE L1 -1426 1081 888 2162 108 0 4 chr1 34336007 34336325 -247857339 + AluSc SINE Alu 1 317 0 24 0 0 0 chr1 34336459 34336483 -247857181 + AT_rich Low_complexity Low_complexity 1 24 0 2018 119 18 0 chr1 34336498 34336775 -247856889 - AluSx SINE Alu -30 282 1 191 231 141 13 chr1 34337214 34337292 -247856372 + L2 LINE L2 3225 3312 -1 217 219 14 137 chr1 34338139 34338166 -247855498 + MIR SINE MIR 84 113 -95 2085 130 7 3 chr1 34338166 34338466 -247855198 - AluSx SINE Alu -11 301 1 217 219 14 137 chr1 34338466 34338511 -247855153 + MIR SINE MIR 113 147 -61 214 234 0 0 chr1 34338810 34338857 -247854807 + MIR SINE MIR 67 113 -149 2057 122 7 0 chr1 34339312 34339599 -247854065 + AluSx SINE Alu 1 289 -23 620 124 9 53 chr1 34339599 34339712 -247853952 + AluSg/x SINE Alu 203 310 0 1458 217 59 48 chr1 34339739 34340177 -247853487 - LTR47B LTR ERVL 0 443 1 2448 83 6 10 chr1 34340963 34341277 -247852387 + AluSq SINE Alu 1 313 0 1362 157 0 14 chr1 34342115 34342332 -247851332 - AluJb SINE Alu -12 300 87 2608 126 0 3 chr1 34342583 34342947 -247850717 - THE1B LTR MaLR 0 364 2 1667 148 62 36 chr1 34343650 34344007 -247849657 - THE1C LTR MaLR -9 366 1 340 323 40 28 chr1 34344604 34344829 -247848835 - LTR23-int LTR ERV1 -1640 5161 2727 502 311 58 58 chr1 34344976 34345439 -247848225 - LTR23-int LTR ERV1 -2094 2553 2091 681 322 63 31 chr1 34347161 34347605 -247846059 - LTR23-int LTR ERV1 -4063 584 127 810 60 0 0 chr1 34347870 34347970 -247845694 - AluY SINE Alu 0 311 212 234 0 0 0 chr1 34348988 34349014 -247844650 + (T)n Simple_repeat Simple_repeat 1 26 0 2459 60 0 10 chr1 34349246 34349560 -247844104 + AluY SINE Alu 1 311 0 1783 153 0 40 chr1 34350111 34350411 -247843253 + AluJo SINE Alu 5 292 -20 1366 104 152 4 chr1 34350743 34350973 -247842691 - AluSg1 SINE Alu -45 264 1 235 257 0 50 chr1 34351348 34351449 -247842215 - LTR23 LTR ERV1 0 437 342 1247 136 6 0 chr1 34351595 34351793 -247841871 + AluSc SINE Alu 103 301 0 987 203 5 0 chr1 34351796 34351983 -247841681 - L1M4 LINE L1 -1044 5102 4915 2610 133 31 12 chr1 34352460 34352875 -247840789 - MSTB LTR MaLR 0 426 4 517 259 40 30 chr1 34353163 34353364 -247840300 + L2 LINE L2 2859 3061 -252 10385 115 14 5 chr1 34353632 34355210 -247838454 - Tigger1 DNA MER2_type -645 1773 182 1918 118 85 0 chr1 34355218 34355489 -247838175 - AluSx SINE Alu -18 294 1 410 213 205 8 chr1 34355811 34355933 -247837731 + MIR SINE MIR 55 200 -62 996 119 0 0 chr1 34356801 34356978 -247836686 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 26 30 0 0 chr1 34357272 34357305 -247836359 + AT_rich Low_complexity Low_complexity 1 33 0 2334 115 0 0 chr1 34357459 34357764 -247835900 - AluSq SINE Alu -8 305 1 1247 159 18 14 chr1 34358022 34358242 -247835422 - AluJo SINE Alu -5 307 87 1646 188 56 28 chr1 34358278 34358746 -247834918 + MER99 DNA DNA 197 726 -102 428 214 258 44 chr1 34358941 34359305 -247834359 + L2 LINE L2 2871 3312 -1 209 250 23 0 chr1 34359659 34359703 -247833961 + MIR SINE MIR 47 91 -117 783 274 165 12 chr1 34359888 34360318 -247833346 + L2 LINE L2 1131 1626 -1688 1202 143 0 0 chr1 34360318 34360493 -247833171 - AluY SINE Alu -17 294 120 2045 128 0 10 chr1 34360594 34360918 -247832746 + AluSx SINE Alu 1 321 0 187 357 24 0 chr1 34360971 34361055 -247832609 + L2 LINE L2 2736 2821 -493 837 175 41 18 chr1 34361227 34361398 -247832266 + MER45A DNA AcHobo 4 178 0 206 192 0 41 chr1 34361494 34361567 -247832097 + (TGAA)n Simple_repeat Simple_repeat 3 72 0 451 276 35 39 chr1 34362323 34362526 -247831138 + L2 LINE L2 2836 3037 -276 532 294 144 0 chr1 34362572 34362766 -247830898 + MIR SINE MIR 40 261 -1 236 255 94 0 chr1 34362774 34362880 -247830784 + L2 LINE L2 3138 3253 -19 1764 136 25 3 chr1 34363507 34363793 -247829871 + AluJb SINE Alu 1 292 -20 409 224 41 0 chr1 34363809 34363907 -247829757 - MIR SINE MIR -62 200 99 1671 78 0 5 chr1 34364049 34364253 -247829411 - AluSg SINE Alu -107 203 1 2220 116 13 0 chr1 34364309 34364611 -247829053 - AluSx SINE Alu -6 306 1 481 221 35 153 chr1 34364678 34364932 -247828732 - MIR SINE MIR -21 241 18 185 81 0 27 chr1 34365018 34365055 -247828609 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 277 313 101 32 chr1 34365210 34365427 -247828237 + L2 LINE L2 2145 2376 -938 237 247 91 0 chr1 34365615 34365692 -247827972 - L1ME2 LINE L1 -19 6145 6062 356 276 83 36 chr1 34365878 34366070 -247827594 + L1ME1 LINE L1 5870 6070 -96 2015 128 3 17 chr1 34366086 34366382 -247827282 + AluSx SINE Alu 2 293 -19 253 248 95 36 chr1 34366684 34366821 -247826843 - L1ME4a LINE L1 -14 6107 5963 1734 158 10 52 chr1 34366871 34367033 -247826631 - AluJb SINE Alu -15 297 153 2360 88 0 3 chr1 34367033 34367329 -247826335 - AluSq SINE Alu -18 295 1 1734 158 10 52 chr1 34367329 34367476 -247826188 - AluJb SINE Alu -159 153 1 505 205 45 9 chr1 34367680 34367792 -247825872 - FRAM SINE Alu -1 175 60 345 298 80 32 chr1 34367811 34367999 -247825665 + MIR SINE MIR 66 262 0 369 296 74 30 chr1 34368032 34368235 -247825429 - L1ME4a LINE L1 -342 5779 5568 2004 127 17 14 chr1 34368390 34368682 -247824982 + AluSx SINE Alu 1 293 -19 491 248 33 46 chr1 34368808 34368961 -247824703 - MIR3 SINE MIR -7 201 51 180 0 0 0 chr1 34369414 34369434 -247824230 + (T)n Simple_repeat Simple_repeat 1 20 0 295 208 0 0 chr1 34369460 34369508 -247824156 + AluJ/monomer SINE Alu 1 48 -254 2239 77 0 21 chr1 34369539 34369826 -247823838 + AluSc SINE Alu 1 281 -28 187 379 98 0 chr1 34369845 34369998 -247823666 + L2 LINE L2 2685 2852 -462 2256 82 11 3 chr1 34370428 34370710 -247822954 - AluSq SINE Alu -19 294 11 456 244 153 9 chr1 34371391 34371616 -247822048 - MIR SINE MIR 0 262 3 24 0 0 0 chr1 34371744 34371768 -247821896 + AT_rich Low_complexity Low_complexity 1 24 0 1565 172 58 10 chr1 34372145 34372436 -247821228 + AluJb SINE Alu 1 305 -7 357 313 73 13 chr1 34372813 34372963 -247820701 + MIR3 SINE MIR 38 196 -12 225 273 0 0 chr1 34373361 34373416 -247820248 + L2 LINE L2 3258 3312 -1 458 153 0 35 chr1 34373632 34373717 -247819947 - FLAM_A SINE Alu -8 134 53 1958 91 0 0 chr1 34373920 34374161 -247819503 + AluSq SINE Alu 45 285 -28 21 0 0 0 chr1 34374352 34374373 -247819291 + AT_rich Low_complexity Low_complexity 1 21 0 1824 146 53 0 chr1 34375511 34375792 -247817872 + AluJo SINE Alu 1 296 -16 2186 89 14 10 chr1 34376247 34376540 -247817124 + AluSp SINE Alu 1 294 -19 2319 105 0 0 chr1 34378224 34378520 -247815144 - AluY SINE Alu -15 296 1 25 0 0 0 chr1 34378521 34378546 -247815118 + AT_rich Low_complexity Low_complexity 1 25 0 1699 168 0 27 chr1 34378661 34378953 -247814711 + AluJo SINE Alu 13 296 -16 462 256 72 99 chr1 34379466 34379689 -247813975 - MIR SINE MIR -44 218 2 198 0 0 0 chr1 34380143 34380165 -247813499 + (T)n Simple_repeat Simple_repeat 1 22 0 762 182 0 0 chr1 34380601 34380733 -247812931 + FLAM_C SINE Alu 2 133 0 1746 159 65 0 chr1 34381064 34381341 -247812323 - AluJb SINE Alu -17 295 1 320 318 93 0 chr1 34381416 34381523 -247812141 + MIR3 SINE MIR 51 167 -41 2188 127 0 3 chr1 34381534 34381841 -247811823 - AluSx SINE Alu -6 306 1 210 105 0 0 chr1 34382670 34382708 -247810956 + (TTG)n Simple_repeat Simple_repeat 1 38 0 1921 120 10 34 chr1 34382709 34383020 -247810644 - AluSq SINE Alu 0 304 1 2443 83 0 3 chr1 34383198 34383499 -247810165 - AluSq SINE Alu -13 300 1 201 176 0 0 chr1 34384237 34384271 -247809393 + T-rich Low_complexity Low_complexity 1 34 0 2504 86 0 0 chr1 34384671 34384973 -247808691 + AluSx SINE Alu 2 303 -9 231 333 75 17 chr1 34385538 34385658 -247808006 - L2 LINE L2 -6 3266 3140 353 174 43 0 chr1 34385682 34385751 -247807913 - LTR37B LTR ERV1 -53 415 344 409 151 58 23 chr1 34386171 34386257 -247807407 + MER103 DNA DNA 34 122 -44 1860 175 133 3 chr1 34386429 34386811 -247806853 - MSTB1 LTR MaLR 0 432 1 1725 139 99 9 chr1 34386811 34386932 -247806732 + MER46B DNA MER2_type 9 118 -2613 1874 166 14 0 chr1 34386932 34387221 -247806443 + AluJo SINE Alu 1 293 -19 1725 139 99 9 chr1 34387221 34387357 -247806307 + MER46B DNA MER2_type 118 178 -2553 1798 171 7 7 chr1 34387357 34387644 -247806020 + AluJb SINE Alu 5 291 -21 1725 139 99 9 chr1 34387644 34387709 -247805955 + MER46B DNA MER2_type 178 236 0 523 153 180 18 chr1 34389135 34389246 -247804418 + MER20 DNA MER1_type 1 129 -90 433 198 36 36 chr1 34389306 34389417 -247804247 + MER5A DNA MER1_type 1 111 -78 2619 47 0 3 chr1 34389417 34389718 -247803946 + AluY SINE Alu 1 300 -11 1734 58 5 5 chr1 34389718 34389926 -247803738 + AluY SINE Alu 83 290 -21 390 94 141 12 chr1 34389947 34390032 -247803632 + MER5B DNA MER1_type 83 178 0 353 165 71 47 chr1 34390096 34390181 -247803483 + MER5A DNA MER1_type 103 189 0 2344 89 10 0 chr1 34390261 34390565 -247803099 + AluSp SINE Alu 1 307 -6 1721 164 10 17 chr1 34390574 34390866 -247802798 + AluJb SINE Alu 1 290 -22 2323 72 45 0 chr1 34390953 34391244 -247802420 + AluY SINE Alu 1 304 -7 2487 60 7 0 chr1 34391248 34391549 -247802115 + AluY SINE Alu 1 303 -8 1137 207 13 13 chr1 34391673 34391900 -247801764 + AluJo SINE Alu 1 227 -85 2185 119 3 10 chr1 34392078 34392389 -247801275 - AluSc SINE Alu 0 309 1 641 207 7 43 chr1 34392389 34392518 -247801146 - FLAM_A SINE Alu -180 131 6 38 39 0 0 chr1 34392548 34392600 -247801064 + AT_rich Low_complexity Low_complexity 1 52 0 672 104 52 17 chr1 34392603 34392776 -247800888 + (TA)n Simple_repeat Simple_repeat 2 180 0 2257 105 7 0 chr1 34393002 34393296 -247800368 + AluSx SINE Alu 1 296 -16 2381 63 0 3 chr1 34393298 34393607 -247800057 + AluY SINE Alu 1 308 0 1751 168 0 11 chr1 34393686 34393972 -247799692 - AluJo SINE Alu -29 283 1 2119 152 0 0 chr1 34394217 34394526 -247799138 - AluSx SINE Alu -3 309 1 212 326 93 17 chr1 34394644 34394816 -247798848 - L2 LINE L2 -399 2915 2731 422 254 208 36 chr1 34394873 34395060 -247798604 + L3 LINE CR1 1163 1316 -261 2305 112 7 0 chr1 34395060 34395365 -247798299 + AluSx SINE Alu 1 307 -5 422 254 208 36 chr1 34395365 34395456 -247798208 + L3 LINE CR1 1316 1489 -88 347 225 23 112 chr1 34445467 34445725 -247747939 + L1MEd LINE L1 797 1031 -5088 1749 165 0 26 chr1 34445769 34446072 -247747592 + AluJo SINE Alu 17 311 -1 394 241 75 8 chr1 34446299 34446428 -247747236 - MIR SINE MIR -58 150 58 349 206 78 71 chr1 34447227 34447368 -247746296 + MIR3 SINE MIR 58 199 -9 298 345 100 22 chr1 34447360 34447747 -247745917 + L2 LINE L2 2593 3099 -173 * 276 296 9 78 chr1 34447884 34447999 -247745665 + MIR SINE MIR 106 212 -50 1049 197 69 26 chr1 34448234 34448539 -247745125 - MER33 DNA MER1_type -6 318 1 235 287 163 31 chr1 34448559 34448688 -247744976 + MIR SINE MIR 85 230 -32 915 287 112 47 chr1 34449225 34449637 -247744027 - L2 LINE L2 -521 2793 2331 1854 158 135 20 chr1 34449637 34449992 -247743672 - MSTD LTR MaLR 0 396 1 915 287 112 47 chr1 34449992 34450160 -247743504 - L2 LINE L2 -983 2331 2175 407 257 30 0 chr1 34451497 34451598 -247742066 + MIR SINE MIR 32 135 -127 2253 81 54 0 chr1 34451972 34452269 -247741395 + AluSq SINE Alu 1 313 0 786 296 137 19 chr1 34452661 34453173 -247740491 + L2 LINE L2 2743 3313 0 422 284 47 16 chr1 34453670 34453797 -247739867 - MIR3 SINE MIR -29 179 49 590 312 195 14 chr1 34453801 34454285 -247739379 - L2 LINE L2 -11 3261 2682 365 273 12 91 chr1 34454298 34454463 -247739201 - L2 LINE L2 -8 3264 3113 211 258 101 90 chr1 34455176 34455354 -247738310 - L2 LINE L2 -144 3128 2949 2501 62 0 0 chr1 34455555 34455863 -247737801 + AluY SINE Alu 1 308 -3 199 309 71 0 chr1 34457607 34457691 -247735973 - MIR3 SINE MIR -34 174 85 2032 114 17 7 chr1 34457848 34458138 -247735526 - AluSx SINE Alu -19 293 1 668 263 74 14 chr1 34458957 34459187 -247734477 - MIR SINE MIR -1 261 18 200 285 200 8 chr1 34459518 34459648 -247734016 - L2 LINE L2 -1 3312 3158 782 264 29 54 chr1 34459893 34460132 -247733532 - MIR SINE MIR -22 240 8 1918 162 0 10 chr1 34460147 34460450 -247733214 - AluJb SINE Alu -12 300 1 263 254 0 0 chr1 34460462 34460521 -247733143 - MIR SINE MIR -69 139 81 446 283 150 17 chr1 34460947 34461127 -247732537 - MIR SINE MIR -10 252 49 715 130 176 0 chr1 34461158 34461289 -247732375 + MER5A DNA MER1_type 1 154 -35 2205 104 27 0 chr1 34461420 34461719 -247731945 - AluSx SINE Alu -5 307 1 1240 178 23 0 chr1 34461724 34461938 -247731726 - MER20 DNA MER1_type 0 219 1 2303 103 6 0 chr1 34461959 34462270 -247731394 - AluSq SINE Alu 0 313 1 214 253 165 13 chr1 34462349 34462428 -247731236 - MIR3 SINE MIR -111 97 7 289 192 23 69 chr1 34462858 34462988 -247730676 + (CAGAGA)n Simple_repeat Simple_repeat 2 125 0 301 354 113 14 chr1 34462995 34463207 -247730457 + L1MEd LINE L1 979 1211 -4908 510 339 90 28 chr1 34463451 34463608 -247730056 - L2 LINE L2 -3 3310 3164 1914 150 0 3 chr1 34463608 34463908 -247729756 + AluJo SINE Alu 1 299 -13 510 339 90 28 chr1 34463908 34464269 -247729395 - L2 LINE L2 -149 3164 2755 2149 125 6 3 chr1 34464316 34464628 -247729036 + AluSq SINE Alu 1 313 0 486 0 0 0 chr1 34464633 34464687 -247728977 + (GAAAA)n Simple_repeat Simple_repeat 3 56 0 207 182 0 0 chr1 34464709 34464742 -247728922 + A-rich Low_complexity Low_complexity 4 36 0 634 331 82 13 chr1 34464742 34465059 -247728605 - L2 LINE L2 -614 2700 2362 408 272 46 33 chr1 34466130 34466303 -247727361 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 34467319 34467363 -247726301 + (CA)n Simple_repeat Simple_repeat 2 45 0 405 294 96 7 chr1 34467722 34467868 -247725796 - MIR3 SINE MIR -7 201 43 1638 110 4 8 chr1 34468840 34469076 -247724588 + AluSx SINE Alu 1 235 -77 6046 57 3 5 chr1 34469076 34469833 -247723831 + L1PA8 LINE L1 5418 6172 0 672 312 24 28 chr1 34469907 34470160 -247723504 + L1MC4a LINE L1 5351 5602 -2206 1543 219 98 41 chr1 34470166 34470788 -247722876 + MLT1E3 LTR MaLR 2 624 0 1782 167 24 0 chr1 34470801 34471088 -247722576 + AluJb SINE Alu 2 295 -17 586 244 35 66 chr1 34471088 34471375 -247722289 + L1MC4a LINE L1 5609 5886 -1922 2022 121 0 0 chr1 34471380 34471660 -247722004 + AluSx SINE Alu 1 280 -32 224 30 30 0 chr1 34471663 34471696 -247721968 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 1962 154 7 0 chr1 34471833 34472138 -247721526 + AluSx SINE Alu 1 307 -5 510 227 110 32 chr1 34472416 34472570 -247721094 + MIR SINE MIR 78 243 -19 413 262 27 54 chr1 34472795 34472944 -247720720 - MIR3 SINE MIR -58 150 6 701 318 13 25 chr1 34473944 34474180 -247719484 - MIR SINE MIR 0 262 30 1523 235 127 37 chr1 34474401 34474864 -247718800 - MLT1D LTR MaLR 0 505 1 541 249 116 0 chr1 34475129 34475302 -247718362 + MIR SINE MIR 70 262 0 472 312 235 3 chr1 34475295 34475606 -247718058 - L2 LINE L2 -16 3297 2915 * 899 304 129 33 chr1 34475605 34476272 -247717392 - L2 LINE L2 -352 2962 2232 190 245 0 149 chr1 34476396 34476438 -247717226 - MIR SINE MIR -127 135 113 2617 92 59 15 chr1 34476438 34476828 -247716836 + L1PA11 LINE L1 5768 6174 0 190 245 0 149 chr1 34476828 34476879 -247716785 - MIR SINE MIR -149 113 56 194 349 0 72 chr1 34476927 34477079 -247716585 - L2 LINE L2 -459 2855 2715 350 311 162 0 chr1 34477384 34477532 -247716132 + MIR3 SINE MIR 30 201 -7 310 331 26 45 chr1 34478615 34478769 -247714895 - MIR3 SINE MIR -48 160 10 643 286 101 9 chr1 34478817 34479044 -247714620 + MIR SINE MIR 6 253 -9 283 229 229 0 chr1 34479067 34479172 -247714492 - MIR3 SINE MIR -6 202 74 338 314 34 57 chr1 34479286 34479461 -247714203 - MIR SINE MIR -45 217 47 543 269 19 6 chr1 34479612 34479772 -247713892 + MER103 DNA DNA 3 164 -2 265 311 164 16 chr1 34479889 34480011 -247713653 + MER5A DNA MER1_type 35 174 -15 * 364 296 66 8 chr1 34480009 34480168 -247713496 + MIR SINE MIR 23 190 -61 460 320 13 68 chr1 34480597 34480718 -247712946 + MIR SINE MIR 13 116 -146 2324 95 0 3 chr1 34480718 34481023 -247712641 - AluSx SINE Alu -6 306 3 460 320 13 68 chr1 34481023 34481135 -247712529 + MIR SINE MIR 116 233 -29 878 308 83 10 chr1 34481227 34481689 -247711975 - L2 LINE L2 -189 3083 2585 219 283 113 0 chr1 34481811 34481917 -247711747 - L2 LINE L2 -1005 2309 2192 185 238 48 95 chr1 34482518 34482581 -247711083 + L2 LINE L2 3253 3312 -1 * 526 244 151 7 chr1 34482570 34482792 -247710872 + MIR SINE MIR 7 256 -6 356 350 124 44 chr1 34483087 34483499 -247710165 + L2 LINE L2 2355 2799 -515 * 447 259 63 51 chr1 34483495 34483653 -247710011 - L2 LINE L2 -1 3271 3112 330 363 39 70 chr1 34483755 34484138 -247709526 + L2 LINE L2 2897 3267 -5 254 259 0 0 chr1 34484136 34484194 -247709470 + MIR SINE MIR 97 154 -108 * 272 309 183 0 chr1 34484610 34484736 -247708928 + MIR3 SINE MIR 17 165 -43 231 313 50 0 chr1 34484762 34484842 -247708822 + L2 LINE L2 2973 3056 -216 207 316 0 0 chr1 34485055 34485112 -247708552 - MIR SINE MIR 0 262 206 1344 150 18 9 chr1 34485302 34485528 -247708136 - AluJo SINE Alu -1 311 84 268 331 115 7 chr1 34485563 34485711 -247707953 - MIR SINE MIR -51 211 48 252 305 85 9 chr1 34486169 34486283 -247707381 + MIR SINE MIR 30 161 -101 * 636 255 87 5 chr1 34486266 34486462 -247707202 - MIR SINE MIR -1 261 50 1511 151 0 130 chr1 34486471 34486820 -247706844 - AluJb SINE Alu 0 308 2 321 286 163 0 chr1 34487094 34487192 -247706472 - L2 LINE L2 0 3272 3159 379 316 12 19 chr1 34487200 34487361 -247706303 + MIR SINE MIR 26 184 -63 398 299 32 48 chr1 34487995 34488182 -247705482 - MLT1I LTR MaLR -115 294 111 486 296 70 30 chr1 34488483 34488682 -247704982 - MIR SINE MIR -36 226 20 2045 107 3 16 chr1 34488986 34489296 -247704368 - AluSq SINE Alu -1 312 7 407 257 30 0 chr1 34489673 34489774 -247703890 - MIR SINE MIR -127 135 32 915 287 112 47 chr1 34491111 34491279 -247702385 + L2 LINE L2 2175 2331 -983 1854 158 135 20 chr1 34491279 34491634 -247702030 + MSTD LTR MaLR 1 396 0 915 287 112 47 chr1 34491634 34492046 -247701618 + L2 LINE L2 2331 2793 -521 235 287 163 31 chr1 34492583 34492712 -247700952 - MIR SINE MIR -32 230 85 1049 197 69 26 chr1 34492732 34493037 -247700627 + MER33 DNA MER1_type 1 318 -6 276 296 9 78 chr1 34493272 34493387 -247700277 - MIR SINE MIR -50 212 106 288 348 100 22 chr1 34493524 34493911 -247699753 - L2 LINE L2 -173 3099 2593 * 349 206 78 71 chr1 34493903 34494044 -247699620 - MIR3 SINE MIR -9 199 58 394 241 75 8 chr1 34494844 34494973 -247698691 + MIR SINE MIR 58 202 -58 469 250 80 34 chr1 34495690 34495866 -247697798 + MIR SINE MIR 46 229 -33 525 290 28 7 chr1 34495881 34496026 -247697638 - MIR SINE MIR -4 258 111 408 272 46 33 chr1 34496860 34497033 -247696631 - MIR SINE MIR -24 184 8 396 0 0 0 chr1 34498050 34498094 -247695570 + (CA)n Simple_repeat Simple_repeat 2 45 0 405 294 96 7 chr1 34498454 34498600 -247695064 - MIR3 SINE MIR -7 201 43 255 316 135 15 chr1 34499541 34499674 -247693990 - MIR SINE MIR 0 262 114 373 265 73 73 chr1 34501048 34501252 -247692412 - MIR SINE MIR -28 234 31 248 250 125 18 chr1 34501556 34501668 -247691996 - MIR SINE MIR -55 153 30 254 186 70 47 chr1 34502701 34502787 -247690877 - MER5A DNA MER1_type -22 167 80 424 330 116 9 chr1 34503430 34503654 -247690010 - MIR SINE MIR 0 262 15 331 335 92 37 chr1 34503672 34503890 -247689774 + L3 LINE CR1 1345 1574 -3 300 324 122 0 chr1 34505375 34505514 -247688150 - MIR3 SINE MIR -24 184 29 186 171 0 0 chr1 34507200 34507241 -247686423 + (CA)n Simple_repeat Simple_repeat 2 42 0 201 331 56 0 chr1 34508900 34509042 -247684622 + (CAGAGA)n Simple_repeat Simple_repeat 5 154 0 279 0 0 0 chr1 34510141 34510172 -247683492 + (CA)n Simple_repeat Simple_repeat 1 31 0 301 324 233 28 chr1 34510253 34510540 -247683124 - L2 LINE L2 -13 3259 2914 206 135 27 0 chr1 34512574 34512611 -247681053 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 206 342 0 13 chr1 34514120 34514199 -247679465 - MIR3 SINE MIR -49 159 82 385 295 93 0 chr1 34514285 34514414 -247679250 - MIR SINE MIR -43 219 79 384 381 35 17 chr1 34515279 34515510 -247678154 + MIR SINE MIR 28 262 0 548 309 209 18 chr1 34515977 34516719 -247676945 + L2 LINE L2 1522 2405 -909 284 296 30 44 chr1 34516695 34516830 -247676834 + L2 LINE L2 2951 3083 -189 * 200 276 228 8 chr1 34517042 34517169 -247676495 - L3 LINE CR1 -815 762 608 263 338 62 62 chr1 34517319 34517479 -247676185 - L3 LINE CR1 -1221 356 197 537 226 250 10 chr1 34518047 34518255 -247675409 - MIR SINE MIR -3 259 2 663 281 95 5 chr1 34518655 34518865 -247674799 + MIR SINE MIR 20 248 -14 1786 166 6 16 chr1 34518876 34519247 -247674417 + AluJo SINE Alu 1 368 0 256 331 104 0 chr1 34519254 34519408 -247674256 + L2 LINE L2 2886 3055 -217 204 266 64 32 chr1 34520205 34520299 -247673365 + L2 LINE L2 3142 3238 -34 244 311 48 10 chr1 34520380 34520483 -247673181 + L2 LINE L2 2873 2979 -334 439 197 8 57 chr1 34520594 34520716 -247672948 - MER94 DNA DNA -18 116 1 * 615 256 172 0 chr1 34520716 34520974 -247672690 - MER113 DNA MER1_type? -131 390 88 200 244 0 22 chr1 34521132 34521177 -247672487 - L2 LINE L2 -8 3305 3262 * 616 319 97 0 chr1 34521145 34521361 -247672303 - MIR SINE MIR -14 248 12 210 322 55 62 chr1 34521704 34521850 -247671814 - L2 LINE L2 -136 3136 2992 277 265 71 0 chr1 34522028 34522126 -247671538 - MIR SINE MIR -71 137 33 237 278 167 19 chr1 34524262 34524370 -247669294 - MIR3 SINE MIR -51 157 34 558 346 132 11 chr1 34524793 34525148 -247668516 + L2 LINE L2 2855 3252 -20 660 292 31 16 chr1 34526174 34526366 -247667298 + MIR SINE MIR 68 262 0 276 260 171 10 chr1 34526784 34526887 -247666777 + MIR SINE MIR 37 153 -63 213 313 125 19 chr1 34527420 34527580 -247666084 - MIR3 SINE MIR -22 186 10 24 67 0 0 chr1 34530255 34530300 -247663364 + GC_rich Low_complexity Low_complexity 1 45 0 516 259 212 0 chr1 34531094 34531287 -247662377 - MIR SINE MIR -16 246 13 237 318 0 0 chr1 34531413 34531479 -247662185 + GA-rich Low_complexity Low_complexity 2 67 0 189 74 0 0 chr1 34531848 34531875 -247661789 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 22 35 0 0 chr1 34532132 34532161 -247661503 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr1 34533152 34533189 -247660475 + GC_rich Low_complexity Low_complexity 1 37 0 401 311 14 5 chr1 34533919 34534062 -247659602 + MIR SINE MIR 17 160 -51 1054 332 44 29 chr1 34534109 34534649 -247659015 + L2 LINE L2 2622 3183 -130 1692 190 0 3 chr1 34534649 34534968 -247658696 - AluSx SINE Alu 0 318 1 1054 332 44 29 chr1 34534968 34535099 -247658565 + L2 LINE L2 3183 3311 -2 247 282 82 12 chr1 34535626 34535711 -247657953 + MIR3 SINE MIR 81 171 -37 2220 83 7 17 chr1 34535931 34536232 -247657432 + AluY SINE Alu 1 298 -13 235 254 14 65 chr1 34536453 34536591 -247657073 + (CAGA)n Simple_repeat Simple_repeat 4 134 0 437 245 16 43 chr1 34536602 34536786 -247656878 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 1781 149 0 14 chr1 34536793 34537075 -247656589 + AluJb SINE Alu 35 312 0 187 391 11 0 chr1 34537385 34537477 -247656187 + L3b LINE CR1 1342 1434 -149 203 245 94 0 chr1 34537516 34537569 -247656095 + MIR SINE MIR 78 135 -73 222 247 31 31 chr1 34538922 34539019 -247654645 + (CAGAGA)n Simple_repeat Simple_repeat 4 100 0 114 51 0 0 chr1 34540085 34540262 -247653402 + GC_rich Low_complexity Low_complexity 1 177 0 186 71 0 0 chr1 34540262 34540290 -247653374 + (G)n Simple_repeat Simple_repeat 1 28 0 206 194 14 56 chr1 34540546 34540618 -247653046 + G-rich Low_complexity Low_complexity 6 74 0 341 207 98 4 chr1 34543232 34543324 -247650340 + MIR3 SINE MIR 67 166 -42 292 80 40 0 chr1 34544274 34544324 -247649340 - L2 LINE L2 0 3313 3262 827 303 132 20 chr1 34544326 34545050 -247648614 + L2 LINE L2 2493 3313 0 556 313 51 10 chr1 34545160 34545355 -247648309 + MIR SINE MIR 20 222 -40 353 307 39 8 chr1 34546373 34546500 -247647164 - MIR SINE MIR -29 233 103 224 250 24 12 chr1 34547301 34547385 -247646279 + (TG)n Simple_repeat Simple_repeat 2 86 0 315 0 0 0 chr1 34547538 34547573 -247646091 + (TG)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chr1 34548215 34548264 -247645400 + GC_rich Low_complexity Low_complexity 1 49 0 207 246 31 0 chr1 34548326 34548391 -247645273 + (TG)n Simple_repeat Simple_repeat 2 68 0 204 40 0 0 chr1 34549520 34549545 -247644119 + (CA)n Simple_repeat Simple_repeat 1 25 0 180 331 107 33 chr1 34549982 34550103 -247643561 + L2 LINE L2 3142 3271 -1 865 264 46 84 chr1 34550456 34550872 -247642792 - L2 LINE L2 0 3313 2914 1641 135 8 0 chr1 34551008 34551245 -247642419 + AluJo SINE Alu 1 239 -73 784 205 35 20 chr1 34551552 34551752 -247641912 + MER63A DNA MER1_type 1 203 -7 1885 129 3 20 chr1 34552001 34552303 -247641361 + AluJb SINE Alu 1 297 -15 348 225 129 55 chr1 34552400 34552578 -247641086 + MIR3 SINE MIR 21 208 0 232 324 73 79 chr1 34553625 34553965 -247639699 + L2 LINE L2 2844 3181 -91 2271 109 3 0 chr1 34553965 34554301 -247639363 + AluSq SINE Alu 1 337 0 262 279 0 0 chr1 34554677 34554738 -247638926 + L3b LINE CR1 1337 1397 -186 2442 65 0 0 chr1 34555572 34555880 -247637784 - AluY SINE Alu -3 308 1 311 240 30 49 chr1 34555885 34555988 -247637676 - MIR SINE MIR -63 145 45 1586 269 78 9 chr1 34556170 34556256 -247637408 + L1ME4a LINE L1 5385 5464 -657 216 0 0 0 chr1 34556256 34556280 -247637384 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1586 269 78 9 chr1 34556280 34556850 -247636814 + L1ME4a LINE L1 5464 6086 -35 297 0 0 0 chr1 34556890 34556923 -247636741 + (TG)n Simple_repeat Simple_repeat 1 33 0 521 314 59 13 chr1 34556959 34557195 -247636469 - L2 LINE L2 -196 3076 2830 555 331 59 61 chr1 34557195 34557723 -247635941 - L1MCa LINE L1 -1205 1582 1292 287 0 53 0 chr1 34557896 34557934 -247635730 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1902 66 0 4 chr1 34557940 34558182 -247635482 - AluSc SINE Alu -38 271 31 1108 255 89 77 chr1 34558192 34558507 -247635157 + L1M4 LINE L1 2973 3283 -2863 2002 154 0 0 chr1 34558507 34558813 -247634851 + AluSx SINE Alu 7 312 0 1108 255 89 77 chr1 34558813 34558977 -247634687 + L1M4 LINE L1 3283 3444 -2702 2057 124 7 0 chr1 34558977 34559275 -247634389 + AluSx SINE Alu 6 305 -7 2010 112 54 0 chr1 34559279 34559573 -247634091 + AluSg SINE Alu 1 310 0 1108 255 89 77 chr1 34559573 34559592 -247634072 + L1M4 LINE L1 3446 3483 -2663 690 333 67 11 chr1 34559593 34559863 -247633801 - L1MEc LINE L1 -2786 3343 3059 1001 196 81 50 chr1 34559863 34560184 -247633480 - L1ME3 LINE L1 -102 6060 5730 647 292 83 9 chr1 34560170 34560519 -247633145 - L1MEc LINE L1 -3257 2872 2498 * 369 354 85 29 chr1 34560527 34560773 -247632891 - L1MEc LINE L1 -4159 2151 1892 287 212 81 10 chr1 34560965 34561064 -247632600 - L1MEc LINE L1 -5045 1074 969 300 53 0 0 chr1 34561073 34561111 -247632553 + (TA)n Simple_repeat Simple_repeat 2 39 0 2043 120 10 0 chr1 34561111 34561402 -247632262 - AluSx SINE Alu -18 294 1 402 380 31 31 chr1 34561408 34561637 -247632027 - L1ME3 LINE L1 0 6162 5934 586 275 12 8 chr1 34561665 34561905 -247631759 - L1ME3 LINE L1 -216 5954 5714 2026 119 0 29 chr1 34562028 34562338 -247631326 - AluJo SINE Alu -11 301 1 375 221 36 46 chr1 34562349 34562544 -247631120 - L1MEc LINE L1 -5221 898 706 * 684 313 53 39 chr1 34562538 34563046 -247630618 - L1ME3 LINE L1 -1163 4983 4463 2188 117 0 0 chr1 34563046 34563346 -247630318 + AluSx SINE Alu 1 300 -12 684 313 53 39 chr1 34563346 34563454 -247630210 - L1ME3 LINE L1 -1683 4463 4358 2453 132 71 20 chr1 34563460 34563968 -247629696 - Tigger3(Golem) DNA MER2_type -9 3020 2487 408 136 0 0 chr1 34563968 34564027 -247629637 + AluJ/FLAM SINE Alu 2 60 -252 969 216 8 49 chr1 34564042 34564287 -247629377 - LTR40a LTR ERVL -52 467 233 2103 161 34 14 chr1 34564296 34564419 -247629245 + MER65A LTR ERV1 1 120 -325 759 213 88 0 chr1 34564419 34564579 -247629085 + FAM SINE Alu 1 174 -1 751 188 0 0 chr1 34564453 34564586 -247629078 + AluJb SINE Alu 171 303 -9 * 2103 161 34 14 chr1 34564579 34564891 -247628773 + MER65A LTR ERV1 120 445 0 694 243 74 11 chr1 34564894 34565083 -247628581 - LTR40a LTR ERVL -318 201 1 297 294 0 28 chr1 34565083 34565192 -247628472 - L1ME3 LINE L1 -1861 4285 4180 1918 146 3 10 chr1 34565206 34565507 -247628157 - AluSx SINE Alu -9 303 5 1936 171 42 23 chr1 34565911 34566255 -247627409 + L1 LINE L1 4921 5278 -868 1966 122 10 10 chr1 34566255 34566567 -247627097 + AluSx SINE Alu 1 312 0 1936 171 42 23 chr1 34566567 34566696 -247626968 + L1 LINE L1 5278 5403 -743 690 206 60 6 chr1 34566720 34566914 -247626750 - MLT2B3 LTR ERVL -250 194 4 241 250 16 16 chr1 34567441 34567505 -247626159 + MIR SINE MIR 30 93 -115 628 255 87 5 chr1 34567538 34567734 -247625930 - MIR SINE MIR -1 261 50 1503 151 0 130 chr1 34567743 34568092 -247625572 - AluJb SINE Alu 0 308 2 315 286 163 0 chr1 34568366 34568464 -247625200 - L2 LINE L2 0 3272 3159 360 279 31 37 chr1 34568472 34568633 -247625031 + MIR SINE MIR 26 184 -63 453 285 26 70 chr1 34569226 34569454 -247624210 - MLT1I LTR MaLR -81 328 111 483 296 70 30 chr1 34569755 34569954 -247623710 - MIR SINE MIR -36 226 20 2405 70 3 10 chr1 34570258 34570572 -247623092 - AluSp SINE Alu -1 312 1 374 294 66 41 chr1 34572548 34572745 -247620919 - MIR SINE MIR -13 249 48 615 226 65 0 chr1 34572836 34572991 -247620673 - MIR SINE MIR -6 256 92 693 334 95 19 chr1 34575079 34575510 -247618154 - L3 LINE CR1 -11 1566 1103 205 265 0 0 chr1 34577109 34577158 -247616506 - MIR SINE MIR -78 130 82 257 188 141 0 chr1 34577931 34577995 -247615669 - MIR SINE MIR -113 149 77 260 324 0 0 chr1 34578146 34578214 -247615450 + L2 LINE L2 3246 3313 0 452 273 52 17 chr1 34579482 34579681 -247613983 - MIR SINE MIR -54 208 4 871 261 6 71 chr1 34579692 34579772 -247613892 + L2 LINE L2 2966 3050 -263 1813 149 34 0 chr1 34579772 34580067 -247613597 - AluJo SINE Alu -7 305 1 871 261 6 71 chr1 34580067 34580297 -247613367 + L2 LINE L2 3050 3256 -57 257 341 0 0 chr1 34580348 34580433 -247613231 - MIR SINE MIR -133 129 45 1657 125 114 11 chr1 34580917 34581197 -247612467 - AluSg1 SINE Alu 0 309 1 252 248 33 91 chr1 34581213 34581334 -247612330 - MIR SINE MIR -65 197 84 423 283 27 16 chr1 34581562 34581739 -247611925 + MIR SINE MIR 18 191 -59 324 269 36 17 chr1 34582261 34582388 -247611276 + MIR SINE MIR 34 161 -61 550 305 76 5 chr1 34583454 34583669 -247609995 + MIR SINE MIR 6 240 -22 357 212 288 8 chr1 34583681 34583799 -247609865 - MIR SINE MIR 0 262 112 180 234 0 0 chr1 34585196 34585243 -247608421 + GA-rich Low_complexity Low_complexity 2 48 0 468 296 70 16 chr1 34585310 34585496 -247608168 + MIR SINE MIR 34 229 -33 386 200 76 38 chr1 34585525 34585630 -247608034 - MIR SINE MIR -105 157 49 217 191 21 0 chr1 34586732 34586779 -247606885 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 564 198 86 8 chr1 34587231 34587402 -247606262 - MIR SINE MIR -62 146 9 516 283 18 74 chr1 34587395 34587678 -247605986 - L2 LINE L2 -85 3187 2921 * 423 176 0 0 chr1 34588102 34588193 -247605471 + (TG)n Simple_repeat Simple_repeat 2 92 0 931 184 12 0 chr1 34590177 34590345 -247603319 - AluSg/x SINE Alu -6 306 137 264 319 22 0 chr1 34590663 34590754 -247602910 + MIR SINE MIR 13 105 -157 651 135 72 0 chr1 34590764 34590875 -247602789 + MLT1D LTR MaLR 1 119 -386 21 36 0 0 chr1 34591037 34591065 -247602599 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr1 34591160 34591203 -247602461 + (TG)n Simple_repeat Simple_repeat 1 43 0 299 205 0 72 chr1 34591242 34591325 -247602339 + HAL1 LINE L1 846 922 -1585 1800 90 6 136 chr1 34591846 34592191 -247601473 + AluSx SINE Alu 1 300 -12 878 279 35 4 chr1 34592259 34592419 -247601245 + MIR SINE MIR 1 173 -89 2166 148 157 7 chr1 34592419 34592858 -247600806 + MLT1D LTR MaLR 1 505 0 878 279 35 4 chr1 34592858 34592951 -247600713 + MIR SINE MIR 173 262 0 1929 149 0 0 chr1 34592980 34593275 -247600389 + AluSx SINE Alu 1 295 -17 642 263 22 45 chr1 34593332 34593511 -247600153 - MLT1J LTR MaLR -325 186 12 1949 135 7 3 chr1 34593577 34593874 -247599790 + AluJb SINE Alu 15 312 0 330 280 8 48 chr1 34593917 34594042 -247599622 - HAL1 LINE L1 -156 2351 2232 476 292 31 15 chr1 34594581 34594776 -247598888 - HAL1 LINE L1 -703 1804 1607 2294 99 0 0 chr1 34594933 34595235 -247598429 - AluSx SINE Alu -8 304 3 183 42 0 0 chr1 34595391 34595415 -247598249 + (TC)n Simple_repeat Simple_repeat 1 24 0 1465 205 0 3 chr1 34595416 34595704 -247597960 - AluSx SINE Alu -19 293 7 413 226 124 49 chr1 34595713 34596019 -247597645 - L1M4 LINE L1 -2845 3301 2973 1884 66 0 4 chr1 34596029 34596271 -247597393 + AluSc SINE Alu 31 271 -38 287 0 53 0 chr1 34596277 34596315 -247597349 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 241 237 0 0 chr1 34596327 34596386 -247597278 - L1M4 LINE L1 -3795 2351 2293 1788 186 3 0 chr1 34596451 34596762 -247596902 - AluJo SINE Alu 0 312 1 467 298 145 60 chr1 34597102 34597976 -247595688 - L1M4 LINE L1 -2791 3355 2407 417 231 10 10 chr1 34597979 34598083 -247595581 - MLT1J LTR MaLR 0 511 408 551 289 54 18 chr1 34598089 34598422 -247595242 + LTR33 LTR ERVL 104 512 -9 2988 148 2 8 chr1 34598872 34599358 -247594306 - MER31A LTR ERV1 -2 483 1 324 0 0 0 chr1 34599426 34599462 -247594202 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 2135 133 0 0 chr1 34599462 34599953 -247593711 - AluSg SINE Alu 0 491 1 1772 117 7 11 chr1 34600012 34600286 -247593378 - AluSg SINE Alu -1 309 37 740 141 0 62 chr1 34600286 34600414 -247593250 + AluJb SINE Alu 191 310 -2 181 292 14 0 chr1 34600495 34600567 -247593097 + MIR SINE MIR 28 100 -162 1541 138 17 59 chr1 34601003 34601293 -247592371 + AluJb SINE Alu 27 304 -8 268 248 72 124 chr1 34601567 34601720 -247591944 + MIR SINE MIR 20 164 -98 378 266 26 9 chr1 34601949 34602062 -247591602 + MIR SINE MIR 50 164 -98 1194 200 68 4 chr1 34602086 34602366 -247591298 - MER66B LTR ERV1 0 486 189 202 228 18 0 chr1 34602656 34602713 -247590951 + GA-rich Low_complexity Low_complexity 2 59 0 185 378 0 17 chr1 34602857 34602976 -247590688 + MIR SINE MIR 122 238 -24 331 240 10 42 chr1 34603305 34603401 -247590263 - L2 LINE L2 -218 3054 2962 314 280 124 83 chr1 34603443 34603661 -247590003 + MIR SINE MIR 35 261 -1 493 229 177 17 chr1 34603720 34603895 -247589769 - MIR SINE MIR -12 250 48 2782 69 41 24 chr1 34604226 34604415 -247589249 + MER41A LTR ERV1 1 185 -369 2255 68 0 42 chr1 34604415 34604726 -247588938 + AluY SINE Alu 4 301 -10 2782 69 41 24 chr1 34604726 34604954 -247588710 + MER41A LTR ERV1 185 425 -129 2323 91 0 0 chr1 34604954 34605261 -247588403 - AluSg SINE Alu 0 310 4 1267 101 11 0 chr1 34605261 34605450 -247588214 - MER41A LTR ERV1 -363 191 1 477 108 0 0 chr1 34605470 34605544 -247588120 - Alu SINE Alu -236 75 2 902 121 0 0 chr1 34605545 34605685 -247587979 + MER41B LTR ERV1 496 635 0 193 320 102 16 chr1 34606318 34606446 -247587218 - L2 LINE L2 0 3313 3175 1971 124 10 3 chr1 34607313 34607611 -247586053 + AluJo SINE Alu 1 300 -12 216 294 15 0 chr1 34608094 34608162 -247585502 + G-rich Low_complexity Low_complexity 3 71 0 206 238 125 0 chr1 34608697 34608777 -247584887 - MIR SINE MIR -72 136 47 231 344 43 0 chr1 34608889 34608982 -247584682 + MIR SINE MIR 87 183 -79 243 180 0 12 chr1 34611195 34611256 -247582408 - MIR SINE MIR -78 130 73 1822 224 112 19 chr1 34611897 34612513 -247581151 + L2 LINE L2 2175 2847 -467 1857 141 10 3 chr1 34612593 34612883 -247580781 - AluJb SINE Alu -20 292 1 462 188 130 51 chr1 34612883 34613021 -247580643 + L2 LINE L2 3165 3313 0 563 258 140 27 chr1 34613042 34613263 -247580401 + MIR SINE MIR 15 260 -2 571 268 193 37 chr1 34613281 34613743 -247579921 + L2 LINE L2 2252 2785 -529 462 278 219 22 chr1 34613834 34614154 -247579510 + L2 LINE L2 2926 3308 -5 297 68 0 0 chr1 34614665 34614709 -247578955 + (GA)n Simple_repeat Simple_repeat 1 44 0 1619 161 17 17 chr1 34614848 34615140 -247578524 + AluJo SINE Alu 15 306 -6 249 263 0 75 chr1 34615375 34615455 -247578209 - L2 LINE L2 0 3313 3240 22 0 0 0 chr1 34616259 34616281 -247577383 + AT_rich Low_complexity Low_complexity 1 22 0 2169 99 3 26 chr1 34616285 34616589 -247577075 + AluSx SINE Alu 1 297 -15 430 323 62 6 chr1 34617044 34617205 -247576459 + L2 LINE L2 3072 3241 -31 738 212 0 15 chr1 34619261 34619393 -247574271 - FLAM_A SINE Alu 0 133 4 204 218 0 18 chr1 34619516 34619571 -247574093 + (CAA)n Simple_repeat Simple_repeat 2 55 0 492 284 164 0 chr1 34620022 34620223 -247573441 - MIR SINE MIR -9 253 20 263 287 30 20 chr1 34620262 34620363 -247573301 - MIR SINE MIR -91 117 16 240 250 87 33 chr1 34620394 34620486 -247573178 + L2 LINE L2 3169 3265 -7 276 30 0 0 chr1 34620740 34620773 -247572891 + (CA)n Simple_repeat Simple_repeat 2 34 0 287 342 26 8 chr1 34621225 34621342 -247572322 + L2 LINE L2 2686 2804 -510 744 81 0 0 chr1 34621965 34622064 -247571600 - AluSg/x SINE Alu 0 310 212 362 330 157 8 chr1 34622514 34622984 -247570680 + L2 LINE L2 2509 3083 -189 189 171 0 0 chr1 34623758 34623793 -247569871 + (TTA)n Simple_repeat Simple_repeat 2 36 0 250 336 44 35 chr1 34624287 34624400 -247569264 + L2 LINE L2 3159 3272 0 195 267 60 60 chr1 34624689 34624839 -247568825 + MIR3 SINE MIR 22 171 -37 * 785 315 30 4 chr1 34624824 34625059 -247568605 + MIR SINE MIR 9 249 -13 195 42 0 0 chr1 34626945 34626969 -247566695 + (T)n Simple_repeat Simple_repeat 1 24 0 307 232 36 94 chr1 34627180 34627318 -247566346 + L2 LINE L2 2384 2513 -801 219 239 0 0 chr1 34627323 34627369 -247566295 + L2 LINE L2 3266 3311 -2 288 310 9 26 chr1 34628815 34628928 -247564736 + MIR3 SINE MIR 55 165 -43 191 146 24 0 chr1 34629491 34629532 -247564132 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 0 0 0 chr1 34629662 34629685 -247563979 + GC_rich Low_complexity Low_complexity 1 23 0 219 314 67 19 chr1 34629749 34629854 -247563810 + MIR SINE MIR 31 140 -68 347 311 54 75 chr1 34630145 34630425 -247563239 - L2 LINE L2 -93 3179 2906 281 143 36 0 chr1 34631139 34631195 -247562469 + G-rich Low_complexity Low_complexity 3 60 0 291 283 35 13 chr1 34631275 34631371 -247562293 + MIR SINE MIR 48 145 -63 405 311 76 54 chr1 34633231 34633601 -247560063 + L2 LINE L2 2600 2977 -337 388 345 132 15 chr1 34633673 34633998 -247559666 + L2 LINE L2 2951 3313 0 253 248 0 124 chr1 34634114 34634219 -247559445 + MIR SINE MIR 45 136 -72 235 275 22 22 chr1 34637317 34637408 -247556256 + GA-rich Low_complexity Low_complexity 4 94 0 216 322 0 11 chr1 34638010 34638100 -247555564 - L3b LINE CR1 -347 1236 1148 874 233 63 111 chr1 34638817 34639341 -247554323 - L2 LINE L2 0 3313 2815 291 260 13 13 chr1 34640344 34640421 -247553243 - Charlie4 DNA MER1_type -1 1960 1884 325 297 151 26 chr1 34640556 34640790 -247552874 - MIR SINE MIR 0 262 5 680 286 173 17 chr1 34640909 34641325 -247552339 + L3 LINE CR1 786 1266 -311 247 271 17 0 chr1 34641797 34641856 -247551808 - L2 LINE L2 -3 3269 3210 1809 164 30 7 chr1 34642642 34642947 -247550717 - AluJo SINE Alu 0 312 1 440 261 35 70 chr1 34642947 34643037 -247550627 - MIR SINE MIR -64 198 106 2075 137 0 0 chr1 34643037 34643336 -247550328 + AluSx SINE Alu 5 303 -9 440 261 35 70 chr1 34643336 34643444 -247550220 - MIR SINE MIR -156 106 7 226 247 0 82 chr1 34643532 34643617 -247550047 + MIR SINE MIR 73 150 -112 183 213 0 43 chr1 34643999 34644046 -247549618 + L2 LINE L2 3195 3239 -33 2076 98 11 11 chr1 34644065 34644385 -247549279 - AluSx SINE Alu 0 320 1 322 275 82 4 chr1 34644541 34644657 -247549007 + MIR SINE MIR 46 170 -38 467 317 17 39 chr1 34645450 34645630 -247548034 + MIR SINE MIR 61 236 -26 866 238 73 5 chr1 34645684 34645890 -247547774 - MIR SINE MIR -39 223 4 952 257 160 28 chr1 34645891 34646315 -247547349 + L2 LINE L2 2834 3313 0 604 313 92 5 chr1 34647166 34647383 -247546281 + MIR SINE MIR 20 255 -7 226 414 51 0 chr1 34648236 34648393 -247545271 - MIR SINE MIR -7 255 91 201 276 35 17 chr1 34648530 34648588 -247545076 - MIR SINE MIR -133 129 71 220 289 40 81 chr1 34648836 34648985 -247544679 + MIR3 SINE MIR 33 175 -33 988 179 111 11 chr1 34649337 34649527 -247544137 - MER3 DNA MER1_type 0 209 1 404 256 131 7 chr1 34649610 34649747 -247543917 + MIR SINE MIR 109 262 0 279 224 45 15 chr1 34651904 34651971 -247541693 - L2 LINE L2 -39 3274 3206 562 284 34 64 chr1 34651975 34652211 -247541453 + MIR SINE MIR 34 262 0 424 256 74 8 chr1 34652321 34652442 -247541222 - MIR3 SINE MIR -78 130 2 200 356 22 0 chr1 34653384 34653474 -247540190 - MIR SINE MIR -84 124 33 379 345 104 66 chr1 34653535 34654094 -247539570 - L2 LINE L2 -3 3310 2774 2283 103 0 0 chr1 34654094 34654395 -247539269 + AluSx SINE Alu 1 301 -11 216 67 0 0 chr1 34654401 34654431 -247539233 + (CA)n Simple_repeat Simple_repeat 2 31 0 379 345 104 66 chr1 34654431 34654751 -247538913 - L2 LINE L2 -543 2770 2365 895 253 64 0 chr1 34654965 34655198 -247538466 + MIR SINE MIR 14 261 -1 223 339 54 33 chr1 34657075 34657213 -247536451 - MIR SINE MIR -71 137 14 387 265 82 0 chr1 34660509 34660607 -247533057 + MIR SINE MIR 38 143 -119 276 329 70 35 chr1 34660818 34660961 -247532703 + MIR SINE MIR 113 260 -2 271 225 171 9 chr1 34661200 34661311 -247532353 - MIR3 SINE MIR -70 138 10 428 257 29 14 chr1 34662384 34662524 -247531140 - MIR3 SINE MIR -47 161 20 427 340 50 22 chr1 34664508 34664856 -247528808 - L2 LINE L2 -235 3037 2684 187 292 31 0 chr1 34665246 34665311 -247528353 - MIR SINE MIR -63 145 79 338 230 31 152 chr1 34665725 34665806 -247527858 - L2 LINE L2 0 3272 3183 2217 89 0 3 chr1 34665806 34666099 -247527565 + AluSx SINE Alu 1 292 -20 586 92 0 0 chr1 34666023 34666100 -247527564 + AluSg/x SINE Alu 215 323 0 190 94 0 0 chr1 34666100 34666132 -247527532 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 338 230 31 152 chr1 34666132 34666239 -247527425 - L2 LINE L2 -88 3184 3105 207 204 0 0 chr1 34666469 34666513 -247527151 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 252 26 87 chr1 34667297 34667412 -247526252 - MIR SINE MIR -70 138 31 316 258 142 0 chr1 34670672 34670795 -247522869 - MIR3 SINE MIR -20 188 48 501 319 59 15 chr1 34671663 34671867 -247521797 + MIR SINE MIR 50 262 0 679 277 94 9 chr1 34672565 34672778 -247520886 - MIR SINE MIR -30 232 2 200 302 137 33 chr1 34673965 34674147 -247519517 + L2 LINE L2 2368 2568 -746 266 314 28 15 chr1 34674377 34674554 -247519110 + L2 LINE L2 2804 2978 -294 848 185 22 6 chr1 34676625 34676803 -247516861 + L1MA7 LINE L1 6111 6291 0 655 289 78 4 chr1 34677030 34677409 -247516255 + MER115 DNA AcHobo 9 455 -238 836 156 101 11 chr1 34677451 34677630 -247516034 + MIR SINE MIR 68 262 0 190 245 151 65 chr1 34680364 34680503 -247513161 - L3 LINE CR1 -69 1508 1358 193 329 95 15 chr1 34680925 34681062 -247512602 - L3b LINE CR1 -136 1447 1300 421 284 35 18 chr1 34681089 34681258 -247512406 - MIR SINE MIR -17 245 74 227 217 72 0 chr1 34682162 34682231 -247511433 - MIR SINE MIR -110 152 79 235 293 24 36 chr1 34682469 34682636 -247511028 + C-rich Low_complexity Low_complexity 3 167 0 619 290 21 86 chr1 34685067 34685346 -247508318 + MIR SINE MIR 2 262 0 247 281 185 8 chr1 34685759 34685885 -247507779 - MIR SINE MIR -62 146 21 184 284 15 15 chr1 34686410 34686477 -247507187 + L2 LINE L2 3206 3272 0 276 178 41 41 chr1 34686860 34686933 -247506731 - MIR SINE MIR -109 153 81 576 291 107 61 chr1 34687620 34687777 -247505887 - L1ME4a LINE L1 -4 6117 5969 2081 97 19 16 chr1 34687777 34688085 -247505579 - AluSc SINE Alu 0 309 1 576 291 107 61 chr1 34688085 34688452 -247505212 - L1ME4a LINE L1 -152 5969 5569 497 263 226 0 chr1 34688559 34688745 -247504919 + MIR SINE MIR 21 248 -14 216 0 0 0 chr1 34688773 34688797 -247504867 + (TCCCC)n Simple_repeat Simple_repeat 2 25 0 433 214 71 0 chr1 34688973 34689071 -247504593 + L2 LINE L2 3209 3313 0 264 271 110 34 chr1 34689706 34689824 -247503840 - MIR SINE MIR -91 171 45 260 290 214 0 chr1 34690348 34690479 -247503185 + MIR SINE MIR 83 241 -21 1059 201 11 0 chr1 34690591 34690765 -247502899 + MER45A DNA AcHobo 3 178 0 290 280 10 10 chr1 34691321 34691460 -247502204 + CT-rich Low_complexity Low_complexity 1 139 0 455 340 42 5 chr1 34691982 34692173 -247501491 - MIR SINE MIR -43 219 22 351 271 83 14 chr1 34692252 34692396 -247501268 + MIR3 SINE MIR 43 196 -12 235 325 25 12 chr1 34692457 34692537 -247501127 + MIR3 SINE MIR 8 88 -120 250 318 70 8 chr1 34693561 34693690 -247499974 + MIR SINE MIR 37 173 -89 497 252 43 0 chr1 34693980 34694095 -247499569 + L2 LINE L2 3141 3260 -12 2295 79 0 0 chr1 34695158 34695448 -247498216 + AluSx SINE Alu 1 290 -22 691 293 62 4 chr1 34695532 34695774 -247497890 - MIR SINE MIR -1 261 6 259 304 43 9 chr1 34695899 34696014 -247497650 + L1ME4a LINE L1 5998 6116 -5 425 247 27 97 chr1 34696395 34696695 -247496969 + L1ME LINE L1 753 1031 -5088 1733 151 0 27 chr1 34696739 34697031 -247496633 + AluJo SINE Alu 17 300 -12 379 171 0 23 chr1 34697031 34697119 -247496545 + GA-rich Low_complexity Low_complexity 1 86 0 544 200 49 57 chr1 34697124 34697355 -247496309 + L1ME LINE L1 1046 1279 -4850 1096 207 15 49 chr1 34697396 34697662 -247496002 - MIR SINE MIR 0 262 6 763 331 88 74 chr1 34697675 34698242 -247495422 + L1ME LINE L1 1385 1966 -4344 2130 109 3 10 chr1 34698242 34698555 -247495109 - AluY SINE Alu 0 311 1 763 331 88 74 chr1 34698555 34698716 -247494948 + L1ME LINE L1 1966 2123 -4187 1670 168 16 16 chr1 34698716 34699019 -247494645 + AluJo SINE Alu 1 303 -9 908 276 54 27 chr1 34699027 34699677 -247493987 + L1ME LINE L1 2096 2770 -3359 1397 159 110 33 chr1 34699677 34699820 -247493844 - MER33 DNA MER1_type -2261 324 193 2014 102 0 33 chr1 34699820 34700125 -247493539 - AluSg SINE Alu -15 295 1 1397 159 110 33 chr1 34700125 34700282 -247493382 - MER33 DNA MER1_type -2392 193 1 908 276 54 27 chr1 34700282 34700375 -247493289 + L1ME LINE L1 2770 2859 -3270 1905 113 35 7 chr1 34700378 34700661 -247493003 + AluSx SINE Alu 1 291 -21 678 168 0 0 chr1 34700661 34700780 -247492884 + MER49 LTR ERV1 188 306 -617 1506 269 99 70 chr1 34701468 34702892 -247490772 + L1ME LINE L1 2857 4321 -1808 984 248 72 46 chr1 34702912 34702936 -247490728 + L1ME LINE L1 5300 5322 -823 1862 92 28 0 chr1 34702936 34703185 -247490479 + AluSq SINE Alu 1 256 -57 984 248 72 46 chr1 34703185 34703635 -247490029 + L1ME LINE L1 5322 5786 -359 756 215 34 17 chr1 34703644 34703821 -247489843 + MIR SINE MIR 71 250 -12 180 77 0 0 chr1 34704088 34704114 -247489550 + (TCCCC)n Simple_repeat Simple_repeat 4 29 0 577 260 20 60 chr1 34704265 34704377 -247489287 + MIR SINE MIR 48 150 -112 1865 154 20 0 chr1 34704377 34704670 -247488994 - AluJb SINE Alu -13 299 1 577 260 20 60 chr1 34704670 34704757 -247488907 + MIR SINE MIR 150 239 -23 198 267 0 0 chr1 34705136 34705181 -247488483 - MIR SINE MIR -110 152 108 1906 128 47 3 chr1 34705212 34705509 -247488155 + AluSx SINE Alu 1 310 -2 656 345 40 0 chr1 34706085 34706334 -247487330 - MIR SINE MIR -2 260 2 484 284 77 24 chr1 34706583 34706752 -247486912 + MIR SINE MIR 61 238 -24 198 257 27 68 chr1 34706806 34706880 -247486784 + MIR SINE MIR 21 91 -171 381 237 70 18 chr1 34707114 34707228 -247486436 + MIR SINE MIR 72 191 -71 615 189 85 57 chr1 34707254 34707287 -247486377 - MIR SINE MIR -13 249 218 2171 94 17 0 chr1 34707287 34707585 -247486079 - AluSc SINE Alu -6 303 1 615 189 85 57 chr1 34707585 34707763 -247485901 - MIR SINE MIR -44 218 32 257 251 51 4 chr1 34709724 34709816 -247483848 - MIR SINE MIR -71 137 44 180 0 0 0 chr1 34710333 34710353 -247483311 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 3248 94 2 2 chr1 34710355 34710802 -247482862 - L1PA13 LINE L1 -11 6152 5706 252 222 0 89 chr1 34710989 34711079 -247482585 - HAL1 LINE L1 -163 2344 2263 198 0 0 0 chr1 34711122 34711144 -247482520 + (TA)n Simple_repeat Simple_repeat 2 23 0 2089 120 0 0 chr1 34711144 34711439 -247482225 - AluSg SINE Alu -15 295 1 27 0 0 0 chr1 34711442 34711469 -247482195 + AT_rich Low_complexity Low_complexity 1 27 0 225 316 81 38 chr1 34711498 34711707 -247481957 - HAL1b LINE L1 -418 930 713 1754 154 37 10 chr1 34711781 34712080 -247481584 - AluJo SINE Alu -5 307 1 314 293 24 0 chr1 34712172 34712254 -247481410 + L1ME3A LINE L1 5792 5875 -295 541 200 8 8 chr1 34712259 34712384 -247481280 + L1MC3 LINE L1 7673 7785 0 596 204 74 113 chr1 34712688 34712919 -247480745 - MIR SINE MIR 0 262 41 2187 116 7 0 chr1 34712954 34713264 -247480400 - AluSx SINE Alu 0 312 1 2060 111 44 3 chr1 34713437 34713734 -247479930 - AluSq SINE Alu -4 309 1 431 303 133 16 chr1 34713734 34714051 -247479613 - L1M4 LINE L1 -1316 4830 4477 1628 127 33 53 chr1 34714314 34714613 -247479051 - AluSg SINE Alu -17 293 1 948 184 0 0 chr1 34714629 34714787 -247478877 + FRAM SINE Alu 1 153 -23 21 71 0 0 chr1 34715092 34715134 -247478530 + AT_rich Low_complexity Low_complexity 1 42 0 1127 278 16 91 chr1 34715290 34715343 -247478321 - MLT1K LTR MaLR -111 477 422 2111 119 0 20 chr1 34715343 34715646 -247478018 + AluSg SINE Alu 1 297 -13 1371 180 39 62 chr1 34715653 34715791 -247477873 + AluJb SINE Alu 1 141 -171 2196 67 0 51 chr1 34715791 34716107 -247477557 + AluY SINE Alu 1 300 -11 1787 67 0 0 chr1 34716108 34716331 -247477333 + AluSp SINE Alu 86 308 -5 1371 180 39 62 chr1 34716331 34716496 -247477168 + AluJb SINE Alu 140 299 -13 2288 82 3 3 chr1 34716496 34716800 -247476864 + AluY SINE Alu 1 304 -7 1127 278 16 91 chr1 34716800 34716820 -247476844 - MLT1K LTR MaLR -171 417 397 1237 173 209 8 chr1 34716820 34717069 -247476595 - AluJo SINE Alu -2 300 2 1127 278 16 91 chr1 34717069 34717482 -247476182 - MLT1K LTR MaLR -191 397 18 1601 157 10 43 chr1 34717576 34717875 -247475789 - AluJo SINE Alu -23 289 1 2342 63 0 3 chr1 34718053 34718352 -247475312 + AluY SINE Alu 1 298 -13 1126 216 194 58 chr1 34718373 34718484 -247475180 + L2 LINE L2 2402 2497 -817 1722 152 0 17 chr1 34718484 34718786 -247474878 - AluJb SINE Alu -5 307 11 1126 216 194 58 chr1 34718786 34719122 -247474542 + L2 LINE L2 2497 2910 -404 204 179 0 0 chr1 34719244 34719283 -247474381 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 212 319 196 22 chr1 34719694 34719832 -247473832 - MIR SINE MIR -42 220 59 251 125 42 0 chr1 34719935 34719983 -247473681 + CT-rich Low_complexity Low_complexity 3 52 0 1319 139 24 36 chr1 34719983 34720235 -247473429 - AluJb SINE Alu -5 307 59 1331 127 0 42 chr1 34720368 34720604 -247473060 - AluJo SINE Alu 0 312 87 243 182 280 6 chr1 34720781 34720878 -247472786 + MIR SINE MIR 32 147 -63 207 0 0 0 chr1 34721050 34721073 -247472591 + (T)n Simple_repeat Simple_repeat 1 23 0 1773 131 84 0 chr1 34721330 34721604 -247472060 + AluSx SINE Alu 1 297 -15 778 191 11 49 chr1 34721689 34721838 -247471826 + L1M4 LINE L1 4907 5046 -1100 2136 102 3 0 chr1 34721838 34722132 -247471532 + AluSq SINE Alu 1 295 -18 778 191 11 49 chr1 34722132 34722193 -247471471 + L1M4 LINE L1 5046 5108 -1038 875 118 0 0 chr1 34722193 34722312 -247471352 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 34722312 34722353 -247471311 + AT_rich Low_complexity Low_complexity 1 41 0 307 262 0 87 chr1 34722393 34722496 -247471168 - L1MC4 LINE L1 -1339 6703 6610 207 162 0 0 chr1 34722505 34722542 -247471122 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 419 234 0 3 chr1 34722543 34722632 -247471032 + AluJ/FLAM SINE Alu 1 68 -234 335 179 119 0 chr1 34722666 34722733 -247470931 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2053 117 0 0 chr1 34722760 34723097 -247470567 - AluSx SINE Alu 0 337 1 1514 154 46 0 chr1 34723123 34723403 -247470261 - AluJb SINE Alu 0 302 11 2371 52 0 0 chr1 34723448 34723739 -247469925 + AluY SINE Alu 1 291 -20 692 170 0 0 chr1 34723748 34723860 -247469804 - FLAM_C SINE Alu -30 113 2 1987 143 0 0 chr1 34723888 34724182 -247469482 + AluJb SINE Alu 1 294 -18 1303 199 30 33 chr1 34724225 34724527 -247469137 + AluJo SINE Alu 1 301 -11 574 222 85 23 chr1 34724722 34724826 -247468838 - MIR SINE MIR -2 260 139 1624 174 13 10 chr1 34724826 34725125 -247468539 - AluJo SINE Alu -7 305 6 574 222 85 23 chr1 34725125 34725196 -247468468 - MIR SINE MIR -123 139 74 295 162 0 29 chr1 34725240 34725308 -247468356 + Alu SINE Alu 235 300 0 2203 98 3 3 chr1 34725418 34725725 -247467939 + AluSp SINE Alu 1 307 -6 278 297 22 16 chr1 34725835 34725946 -247467718 + MIR SINE MIR 62 172 -36 795 171 0 0 chr1 34726005 34726134 -247467530 - FLAM_C SINE Alu -4 129 1 21 0 0 0 chr1 34726142 34726163 -247467501 + AT_rich Low_complexity Low_complexity 1 21 0 2315 81 0 3 chr1 34726170 34726477 -247467187 + AluSg SINE Alu 1 306 -4 3475 129 51 18 chr1 34726477 34726979 -247466685 + Tigger1 DNA MER2_type 66 591 -1827 1935 119 42 0 chr1 34726979 34727265 -247466399 - AluSp SINE Alu -15 298 1 3475 129 51 18 chr1 34727265 34727334 -247466330 + Tigger1 DNA MER2_type 591 656 -1762 816 71 143 0 chr1 34727342 34727468 -247466196 + AluY SINE Alu 168 311 0 730 123 0 0 chr1 34727468 34727574 -247466090 + Tigger1 DNA MER2_type 651 756 -1662 2071 111 7 0 chr1 34727598 34727887 -247465777 + AluSx SINE Alu 1 291 -21 1317 209 21 3 chr1 34727917 34728204 -247465460 + AluJo SINE Alu 1 292 -20 2239 68 0 14 chr1 34728207 34728499 -247465165 + AluY SINE Alu 5 292 -19 706 102 51 8 chr1 34728503 34728621 -247465043 + AluSq/x SINE Alu 1 123 -189 186 43 0 0 chr1 34729063 34729086 -247464578 + (TG)n Simple_repeat Simple_repeat 2 24 0 260 322 161 8 chr1 34729797 34729915 -247463749 + MIR SINE MIR 16 151 -57 2064 102 0 0 chr1 34730379 34730654 -247463010 + AluSq SINE Alu 9 283 -30 231 227 0 0 chr1 34730823 34730867 -247462797 + MER46C DNA MER2_type 3 46 -292 816 163 8 0 chr1 34730871 34731000 -247462664 + FLAM_C SINE Alu 2 131 -12 791 221 52 41 chr1 34731070 34731334 -247462330 + MER46C DNA MER2_type 59 325 -13 1232 172 48 15 chr1 34731334 34731688 -247461976 + MER106B DNA MER1_type 1 402 -657 799 125 153 23 chr1 34731693 34731909 -247461755 + MER106B DNA MER1_type 554 797 -262 1952 127 3 3 chr1 34731911 34732210 -247461454 + AluSx SINE Alu 1 299 -13 1895 127 3 7 chr1 34732249 34732549 -247461115 + AluSx SINE Alu 1 299 -13 804 123 0 0 chr1 34732549 34732663 -247461001 - AluJo/FLAM SINE Alu -198 114 1 1425 174 19 0 chr1 34732671 34732930 -247460734 - AluJb SINE Alu -16 296 33 189 0 0 0 chr1 34733001 34733022 -247460642 + (T)n Simple_repeat Simple_repeat 1 21 0 537 221 326 11 chr1 34733153 34733343 -247460321 + MIR SINE MIR 13 262 0 2273 75 0 10 chr1 34733386 34733680 -247459984 + AluY SINE Alu 1 291 -20 1913 132 3 0 chr1 34733684 34733971 -247459693 + AluSx SINE Alu 1 288 -24 2734 98 19 0 chr1 34733971 34734350 -247459314 + Tigger1 DNA MER2_type 872 1257 -1161 198 0 0 0 chr1 34734350 34734372 -247459292 + (TA)n Simple_repeat Simple_repeat 2 23 0 2041 113 3 3 chr1 34734372 34734665 -247458999 - AluSq SINE Alu -20 293 1 395 108 0 206 chr1 34734665 34734767 -247458897 + Tigger1 DNA MER2_type 1378 1458 -960 4034 128 68 78 chr1 34734767 34735085 -247458579 + Tigger1 DNA MER2_type 1576 1895 -523 1643 148 53 7 chr1 34735085 34735368 -247458296 + AluJb SINE Alu 1 296 -16 246 62 0 0 chr1 34735368 34735400 -247458264 + (CATA)n Simple_repeat Simple_repeat 4 35 0 4034 128 68 78 chr1 34735400 34735426 -247458238 + Tigger1 DNA MER2_type 1894 1919 -499 1718 156 10 10 chr1 34735426 34735714 -247457950 - AluJo SINE Alu -23 289 2 4034 128 68 78 chr1 34735714 34736029 -247457635 + Tigger1 DNA MER2_type 1919 2235 -183 1972 97 0 15 chr1 34736029 34736298 -247457366 + AluSg SINE Alu 1 265 -45 4034 128 68 78 chr1 34736298 34736315 -247457349 + Tigger1 DNA MER2_type 2235 2251 -167 207 0 0 0 chr1 34736315 34736338 -247457326 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4034 128 68 78 chr1 34736338 34736507 -247457157 + Tigger1 DNA MER2_type 2251 2417 -1 279 208 0 0 chr1 34736510 34736563 -247457101 + MIR SINE MIR 210 262 0 667 254 37 26 chr1 34736665 34736854 -247456810 - MLT1L LTR MaLR -322 293 103 797 106 8 16 chr1 34737201 34737324 -247456340 - FLAM_A SINE Alu 0 142 21 202 114 0 29 chr1 34737728 34737763 -247455901 + MIR SINE MIR 117 150 -112 563 271 0 0 chr1 34737805 34737923 -247455741 - L2 LINE L2 -1 3271 3154 944 104 8 15 chr1 34737984 34738118 -247455546 - FLAM_C SINE Alu 0 133 1 222 184 0 20 chr1 34738120 34738144 -247455520 + CT-rich Low_complexity Low_complexity 1 24 -24 1486 167 40 47 chr1 34738144 34738443 -247455221 - AluJb SINE Alu -15 297 1 222 184 0 20 chr1 34738443 34738467 -247455197 + CT-rich Low_complexity Low_complexity 24 48 0 203 329 12 37 chr1 34738508 34738590 -247455074 + MIR SINE MIR 38 117 -91 1953 75 65 4 chr1 34738632 34738910 -247454754 - AluSq SINE Alu -18 295 1 1933 75 25 7 chr1 34738944 34739256 -247454408 + AluSx SINE Alu 1 317 0 2092 104 3 0 chr1 34739472 34739761 -247453903 - AluSx SINE Alu -22 290 1 546 216 8 64 chr1 34739882 34740007 -247453657 - L2 LINE L2 -9 3304 3187 462 239 124 104 chr1 34740015 34740174 -247453490 - Charlie8 DNA MER1_type -53 288 121 2119 100 24 0 chr1 34740174 34740465 -247453199 - AluSg SINE Alu -12 298 1 462 239 124 104 chr1 34740465 34740564 -247453100 - Charlie8 DNA MER1_type -220 121 25 36 44 0 15 chr1 34740640 34740677 -247452987 + AT_rich Low_complexity Low_complexity 1 38 -29 2055 113 0 10 chr1 34740677 34740977 -247452687 - AluSx SINE Alu -15 297 1 36 44 0 15 chr1 34740977 34741007 -247452657 + AT_rich Low_complexity Low_complexity 38 67 0 1878 93 0 15 chr1 34741007 34741276 -247452388 - AluSx SINE Alu -23 289 25 1862 129 23 26 chr1 34741298 34741601 -247452063 - AluSx SINE Alu -10 302 1 543 308 125 45 chr1 34741621 34742120 -247451544 - L2 LINE L2 -692 2622 2165 2097 110 0 0 chr1 34742120 34742412 -247451252 + AluSx SINE Alu 1 292 -20 2259 92 0 13 chr1 34742421 34742737 -247450927 + AluSq SINE Alu 1 312 -1 543 308 125 45 chr1 34742737 34742932 -247450732 - L2 LINE L2 -1156 2158 1980 738 159 0 38 chr1 34742932 34743064 -247450600 + FLAM_C SINE Alu 1 127 -6 543 308 125 45 chr1 34743064 34743103 -247450561 - L2 LINE L2 -1334 1980 1768 2203 103 0 3 chr1 34743103 34743404 -247450260 + AluSp SINE Alu 1 300 -13 474 314 29 58 chr1 34743408 34743650 -247450014 - L2 LINE L2 -654 2660 2426 742 183 86 20 chr1 34743688 34743885 -247449779 - MER106B DNA MER1_type -2 1057 848 1874 157 3 0 chr1 34743886 34744185 -247449479 + AluJb SINE Alu 1 300 -12 1858 96 64 4 chr1 34744491 34744772 -247448892 + AluSq SINE Alu 4 301 -12 1776 140 3 13 chr1 34744787 34745087 -247448577 + AluJb SINE Alu 2 298 -14 250 297 168 20 chr1 34745224 34745325 -247448339 - L2 LINE L2 -12 3260 3145 357 304 158 16 chr1 34745628 34745812 -247447852 - MIR SINE MIR -30 232 23 335 288 63 36 chr1 34745958 34746180 -247447484 - L2 LINE L2 -181 3091 2864 219 36 0 0 chr1 34746689 34746717 -247446947 + (GA)n Simple_repeat Simple_repeat 1 28 0 327 338 44 15 chr1 34747027 34747163 -247446501 - MIR SINE MIR -95 167 28 2302 92 0 0 chr1 34747232 34747537 -247446127 + AluSc SINE Alu 1 305 -4 2091 69 0 11 chr1 34747651 34747926 -247445738 - AluY SINE Alu -39 272 1 182 307 40 50 chr1 34748080 34748181 -247445483 + L2 LINE L2 3166 3265 -7 715 160 13 20 chr1 34748338 34748488 -247445176 + L1MA10 LINE L1 6185 6333 -1 2300 81 3 0 chr1 34748497 34748794 -247444870 + AluSp SINE Alu 1 298 -15 194 209 127 6 chr1 34748912 34748971 -247444693 - MIR SINE MIR -116 92 34 1903 153 7 0 chr1 34750088 34750389 -247443275 + AluJo SINE Alu 1 303 -9 426 301 44 12 chr1 34750412 34750600 -247443064 + MIR SINE MIR 20 212 -50 1997 105 34 3 chr1 34751814 34752110 -247441554 - AluSg SINE Alu -5 305 1 183 129 0 0 chr1 34752138 34752169 -247441495 + (T)n Simple_repeat Simple_repeat 1 31 0 2196 84 10 0 chr1 34753403 34753700 -247439964 + AluSp SINE Alu 1 300 -13 2296 76 0 13 chr1 34753818 34754122 -247439542 + AluY SINE Alu 1 300 -11 187 330 274 0 chr1 34754828 34754934 -247438730 - L2 LINE L2 -2 3270 3136 347 313 37 8 chr1 34755154 34755288 -247438376 + MIR SINE MIR 48 185 -77 189 0 0 0 chr1 34755288 34755309 -247438355 + (T)n Simple_repeat Simple_repeat 1 21 0 715 241 85 30 chr1 34756720 34756919 -247436745 - MIR SINE MIR -13 249 40 2133 74 0 11 chr1 34756943 34757226 -247436438 - AluSx SINE Alu -32 280 1 2157 62 3 42 chr1 34757403 34757709 -247435955 - AluY SINE Alu -17 294 1 2329 91 0 0 chr1 34757811 34758119 -247435545 - AluSq SINE Alu -5 308 1 188 324 110 29 chr1 34758286 34758378 -247435286 + MIR SINE MIR 108 216 -46 1752 121 69 0 chr1 34758378 34758668 -247434996 + AluSx SINE Alu 1 310 -2 188 324 110 29 chr1 34758668 34758711 -247434953 + MIR SINE MIR 216 254 -8 244 224 102 31 chr1 34759289 34759387 -247434277 - MIR SINE MIR -69 193 89 667 254 37 26 chr1 34759722 34759911 -247433753 + MLT1L LTR MaLR 103 293 -322 279 208 0 0 chr1 34760015 34760068 -247433596 - MIR SINE MIR 0 262 210 972 140 20 0 chr1 34760071 34760221 -247433443 - Tigger1 DNA MER2_type -1 2417 2265 207 0 0 0 chr1 34760240 34760263 -247433401 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2042 94 0 0 chr1 34760280 34760547 -247433117 - AluSx SINE Alu -45 267 1 585 219 33 79 chr1 34760604 34760819 -247432845 - L2 LINE L2 -15 3298 3094 520 244 107 6 chr1 34761122 34761290 -247432374 + MIR SINE MIR 57 241 -21 2100 104 10 3 chr1 34761315 34761624 -247432040 - AluSq SINE Alu -2 311 1 27 0 0 0 chr1 34762163 34762190 -247431474 + AT_rich Low_complexity Low_complexity 1 27 0 816 145 0 0 chr1 34764757 34764881 -247428783 + AluJ SINE Alu 6 129 -183 2240 105 0 0 chr1 34764887 34765192 -247428472 + AluSx SINE Alu 2 306 -6 30 0 0 0 chr1 34765350 34765380 -247428284 + AT_rich Low_complexity Low_complexity 1 30 0 2061 90 7 4 chr1 34765380 34765657 -247428007 + AluSc SINE Alu 1 278 -31 186 43 0 0 chr1 34765662 34765685 -247427979 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1031 154 6 22 chr1 34765685 34765867 -247427797 + AluJ SINE Alu 134 312 0 2018 118 0 16 chr1 34765880 34766185 -247427479 + AluSx SINE Alu 7 306 -6 241 104 83 0 chr1 34766600 34766648 -247427016 + L1MA9 LINE L1 6226 6277 -35 329 301 131 13 chr1 34766967 34767120 -247426544 + MIR SINE MIR 17 187 -75 207 0 0 0 chr1 34767254 34767277 -247426387 + (T)n Simple_repeat Simple_repeat 1 23 0 213 279 7 45 chr1 34767389 34767543 -247426121 + (CCG)n Simple_repeat Simple_repeat 2 149 0 22 70 0 0 chr1 34767548 34767591 -247426073 + GC_rich Low_complexity Low_complexity 1 43 0 227 288 168 8 chr1 34768122 34768247 -247425417 + MIR SINE MIR 72 216 -46 2409 78 0 38 chr1 34768248 34768567 -247425097 + AluSg SINE Alu 1 307 -3 2466 75 0 0 chr1 34769702 34769996 -247423668 - AluY SINE Alu -17 294 1 1818 168 3 26 chr1 34769996 34770300 -247423364 - AluJo SINE Alu -15 297 1 210 266 23 86 chr1 34770300 34770368 -247423296 - MIR SINE MIR -4 258 200 2303 120 0 0 chr1 34770368 34770676 -247422988 + AluSq SINE Alu 1 308 -5 210 266 23 86 chr1 34770676 34770735 -247422929 - MIR SINE MIR -62 200 139 2251 120 0 0 chr1 34770835 34771134 -247422530 + AluSg SINE Alu 1 299 -11 2352 98 3 16 chr1 34771134 34771440 -247422224 + AluSg SINE Alu 1 302 -8 2402 98 0 13 chr1 34772005 34772320 -247421344 + AluSx SINE Alu 2 312 0 339 304 103 46 chr1 34772434 34772628 -247421036 + MIR SINE MIR 58 262 0 356 264 211 43 chr1 34772873 34773081 -247420583 + MIR SINE MIR 14 256 -6 220 217 169 12 chr1 34773158 34773241 -247420423 + MIR SINE MIR 34 129 -133 1513 131 61 51 chr1 34774188 34774283 -247419381 + MER2 DNA MER2_type 6 99 -246 2112 106 0 19 chr1 34774283 34774595 -247419069 + AluSx SINE Alu 1 306 -6 1513 131 61 51 chr1 34774595 34774811 -247418853 + MER2 DNA MER2_type 99 320 -25 764 189 13 189 chr1 34775008 34775050 -247418614 - MIR SINE MIR -4 258 210 2560 65 3 0 chr1 34775050 34775356 -247418308 - AluSp SINE Alu -6 307 1 764 189 13 189 chr1 34775356 34775615 -247418049 - MIR SINE MIR -52 210 10 1043 105 0 0 chr1 34776215 34776348 -247417316 + AluSq/x SINE Alu 1 133 -179 243 182 23 0 chr1 34776426 34776470 -247417194 - MIR3 SINE MIR -30 178 134 2092 125 0 7 chr1 34776501 34776798 -247416866 - AluSq SINE Alu -18 295 1 617 136 0 0 chr1 34776937 34777018 -247416646 - AluJ/FLAM SINE Alu -228 84 4 2325 110 3 0 chr1 34777037 34777345 -247416319 + AluSg1 SINE Alu 1 309 0 1985 131 28 3 chr1 34777387 34777677 -247415987 + AluSx SINE Alu 1 297 -15 237 169 0 0 chr1 34777710 34777757 -247415907 + L1MB7 LINE L1 6132 6178 0 2168 89 11 7 chr1 34777851 34778157 -247415507 - AluSp SINE Alu 0 307 1 533 232 98 68 chr1 34778161 34778365 -247415299 - L1ME4a LINE L1 -113 6008 5791 2296 96 0 10 chr1 34778365 34778667 -247414997 - AluSg SINE Alu -11 299 1 533 232 98 68 chr1 34778667 34778830 -247414834 - L1ME4a LINE L1 -330 5791 5634 331 214 194 0 chr1 34779023 34779126 -247414538 - L2 LINE L2 0 3313 3191 772 234 7 0 chr1 34779192 34779337 -247414327 + FRAM SINE Alu 1 146 -30 311 0 0 25 chr1 34779339 34779379 -247414285 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2347 88 3 38 chr1 34779485 34779805 -247413859 + AluSc SINE Alu 1 309 0 239 275 38 25 chr1 34779842 34779922 -247413742 + L3 LINE CR1 1423 1503 -74 2531 50 0 3 chr1 34780031 34780329 -247413335 - AluY SINE Alu -14 297 1 207 288 0 17 chr1 34780556 34780615 -247413049 + L3 LINE CR1 1517 1574 -3 1813 112 0 35 chr1 34781559 34781818 -247411846 + AluSx SINE Alu 10 259 -53 225 318 64 9 chr1 34782292 34782402 -247411262 + MIR SINE MIR 86 201 -61 * 422 241 132 61 chr1 34782399 34782611 -247411053 + MIR SINE MIR 10 236 -26 252 0 0 0 chr1 34782626 34782654 -247411010 + (TG)n Simple_repeat Simple_repeat 1 28 0 2157 111 0 0 chr1 34782654 34782933 -247410731 - AluSx SINE Alu -33 279 1 2118 114 0 38 chr1 34782942 34783257 -247410407 - AluSq SINE Alu -10 303 1 1794 98 0 4 chr1 34783260 34783485 -247410179 - AluSx SINE Alu -88 224 1 180 77 0 0 chr1 34783546 34783572 -247410092 + (TTA)n Simple_repeat Simple_repeat 1 26 0 575 163 0 0 chr1 34783595 34783687 -247409977 - AluJ/FLAM SINE Alu -219 93 2 479 260 215 23 chr1 34784574 34784793 -247408871 + MIR SINE MIR 2 262 0 2295 92 3 0 chr1 34784813 34785128 -247408536 + AluSp SINE Alu 1 316 0 2529 80 0 6 chr1 34785781 34786093 -247407571 - AluSq SINE Alu -3 310 1 2216 113 3 0 chr1 34786095 34786388 -247407276 - AluSx SINE Alu -18 294 1 2395 92 3 0 chr1 34786403 34786707 -247406957 - AluSp SINE Alu -6 307 3 835 107 8 25 chr1 34786719 34786841 -247406823 - FLAM_C SINE Alu -18 125 6 538 323 134 11 chr1 34786847 34787287 -247406377 + L2 LINE L2 1979 2472 -842 604 104 8 52 chr1 34787363 34787497 -247406167 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 1996 139 0 0 chr1 34787497 34787771 -247405893 - AluJb SINE Alu -38 274 1 2223 136 0 0 chr1 34787850 34788160 -247405504 - AluSx SINE Alu -2 310 1 1779 150 0 70 chr1 34788162 34788475 -247405189 - AluJb SINE Alu -15 297 7 709 232 87 93 chr1 34788754 34789064 -247404600 - MER102a DNA MER1_type -14 316 9 859 245 43 51 chr1 34789272 34789525 -247404139 + MIR SINE MIR 12 262 0 1723 150 8 4 chr1 34789612 34789866 -247403798 - AluJo SINE Alu -21 291 37 365 264 35 49 chr1 34790013 34790157 -247403507 + L2 LINE L2 3171 3312 -1 818 268 96 30 chr1 34790302 34790604 -247403060 + MLT1K LTR MaLR 117 438 -150 1344 106 0 11 chr1 34790606 34790819 -247402845 - AluSg/x SINE Alu 0 317 107 307 294 113 57 chr1 34791137 34791314 -247402350 + MIR SINE MIR 47 233 -29 2126 128 7 0 chr1 34791466 34791756 -247401908 - AluSx SINE Alu -20 292 1 432 289 75 11 chr1 34791814 34792001 -247401663 + L1MC4a LINE L1 5628 5809 -312 361 174 0 0 chr1 34792339 34792408 -247401256 + LTR30 LTR ERV1 552 620 -102 247 263 22 66 chr1 34792462 34792526 -247401138 + L1ME4a LINE L1 5991 6047 -74 2206 101 7 3 chr1 34792526 34792822 -247400842 - AluSc SINE Alu -12 297 1 247 263 22 66 chr1 34792822 34792894 -247400770 + L1ME4a LINE L1 6047 6121 0 2232 99 26 3 chr1 34792994 34793297 -247400367 - AluSp SINE Alu -2 311 2 1979 119 18 14 chr1 34793941 34794058 -247399606 + AluSq SINE Alu 20 135 -178 2350 93 0 31 chr1 34794058 34794380 -247399284 + AluSx SINE Alu 1 312 0 1979 119 18 14 chr1 34794380 34794539 -247399125 + AluSq SINE Alu 135 297 -16 256 73 0 0 chr1 34794613 34794654 -247399010 + HY3 scRNA scRNA 54 94 -7 1631 184 17 10 chr1 34794682 34794976 -247398688 + AluJo SINE Alu 1 296 -16 2285 112 0 0 chr1 34794979 34795275 -247398389 + AluSq SINE Alu 1 296 -17 2525 74 0 3 chr1 34795538 34795848 -247397816 - AluY SINE Alu -2 309 1 24 0 0 0 chr1 34795893 34795917 -247397747 + AT_rich Low_complexity Low_complexity 1 24 0 526 293 18 54 chr1 34795943 34796061 -247397603 + MIR SINE MIR 34 146 -116 2351 108 0 0 chr1 34796061 34796356 -247397308 + AluSg SINE Alu 1 295 -15 526 293 18 54 chr1 34796356 34796404 -247397260 + MIR SINE MIR 146 194 -68 1790 106 0 0 chr1 34796410 34796637 -247397027 + AluSq SINE Alu 1 227 -86 3414 173 70 104 chr1 34796637 34796914 -247396750 + L1M4 LINE L1 4169 4454 -1692 1600 184 3 32 chr1 34796914 34797057 -247396607 + AluJb SINE Alu 6 152 -160 2289 97 14 0 chr1 34797057 34797347 -247396317 + AluY SINE Alu 1 294 -17 1600 184 3 32 chr1 34797347 34797512 -247396152 + AluJb SINE Alu 152 305 -7 3414 173 70 104 chr1 34797512 34797559 -247396105 + L1M4 LINE L1 4454 4501 -1645 1865 179 0 3 chr1 34797559 34797585 -247396079 - AluJo SINE Alu 0 312 287 306 0 0 0 chr1 34797585 34797619 -247396045 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1865 179 0 3 chr1 34797619 34797905 -247395759 - AluJo SINE Alu -25 287 1 3414 173 70 104 chr1 34797905 34798261 -247395403 + L1M4 LINE L1 4501 4868 -1278 2290 116 0 7 chr1 34798261 34798571 -247395093 + AluSx SINE Alu 1 308 -4 3414 173 70 104 chr1 34798571 34798929 -247394735 + L1M4 LINE L1 4868 5237 -909 2336 118 0 0 chr1 34798929 34799235 -247394429 - AluSx SINE Alu -6 306 1 1444 107 0 0 chr1 34799239 34799444 -247394220 - L1PA13 LINE L1 -1 6162 5958 3414 173 70 104 chr1 34799444 34799547 -247394117 + L1M4 LINE L1 5240 5278 -868 374 101 29 29 chr1 34799552 34799621 -247394043 + L1MB7 LINE L1 6103 6171 -13 2024 156 10 0 chr1 34799622 34799929 -247393735 - AluJb SINE Alu -2 310 1 210 91 0 0 chr1 34799940 34799973 -247393691 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1500 276 143 23 chr1 34800558 34801025 -247392639 - L2 LINE L2 0 3313 2903 2319 113 0 0 chr1 34801025 34801327 -247392337 + AluSx SINE Alu 1 302 -10 1522 176 58 18 chr1 34801333 34801611 -247392053 + AluJb SINE Alu 1 289 -23 1500 276 143 23 chr1 34801611 34802096 -247391568 - L2 LINE L2 -414 2899 2249 310 328 185 0 chr1 34802088 34802277 -247391387 + MIR SINE MIR 39 262 0 * 2108 143 0 9 chr1 34802296 34802611 -247391053 + AluSx SINE Alu 1 312 0 1732 167 13 42 chr1 34802619 34802759 -247390905 + AluJo SINE Alu 1 144 -168 2363 96 0 0 chr1 34802759 34803050 -247390614 + AluSg SINE Alu 3 293 -17 1732 167 13 42 chr1 34803050 34803215 -247390449 + AluJo SINE Alu 144 297 -15 2327 94 0 10 chr1 34803535 34803843 -247389821 - AluSc SINE Alu -4 305 1 186 319 58 0 chr1 34804189 34804258 -247389406 + MIR SINE MIR 172 244 -18 417 287 149 46 chr1 34804385 34804442 -247389222 + MIR SINE MIR 48 98 -164 198 0 0 0 chr1 34804442 34804464 -247389200 + (TCTTG)n Simple_repeat Simple_repeat 2 23 0 2258 102 10 0 chr1 34804464 34804758 -247388906 - AluSc SINE Alu -12 297 1 2426 99 0 0 chr1 34804759 34805061 -247388603 - AluSq SINE Alu -11 302 1 417 287 149 46 chr1 34805061 34805195 -247388469 + MIR SINE MIR 97 262 0 184 321 18 0 chr1 34805211 34805267 -247388397 - MIR SINE MIR -78 130 74 2221 132 3 0 chr1 34805281 34805585 -247388079 + AluSx SINE Alu 1 305 -7 670 292 50 39 chr1 34805595 34805876 -247387788 + MLT1K LTR MaLR 15 298 -290 2181 116 20 0 chr1 34805915 34806217 -247387447 - AluSx SINE Alu -4 308 1 1974 167 0 0 chr1 34806220 34806514 -247387150 - AluJb SINE Alu -16 296 3 309 226 129 16 chr1 34806526 34806650 -247387014 + MLT1K LTR MaLR 293 430 -158 657 206 89 17 chr1 34806797 34806977 -247386687 - LTR33 LTR ERVL 0 521 329 2393 100 0 0 chr1 34807340 34807649 -247386015 - AluSc SINE Alu 0 309 1 1417 150 105 45 chr1 34807679 34807972 -247385692 + AluSx SINE Alu 1 309 0 834 142 0 0 chr1 34807980 34808093 -247385571 - FLAM_C SINE Alu -30 113 1 28 0 0 0 chr1 34808655 34808683 -247384981 + AT_rich Low_complexity Low_complexity 1 28 0 2446 58 0 7 chr1 34808684 34809024 -247384640 + AluY SINE Alu 1 311 0 233 310 9 60 chr1 34809126 34809242 -247384422 - MIR SINE MIR 0 262 153 373 326 14 14 chr1 34809298 34809439 -247384225 - MIR SINE MIR -101 161 21 2423 105 0 0 chr1 34809452 34809756 -247383908 - AluSx SINE Alu -8 304 1 835 238 32 0 chr1 34810268 34810457 -247383207 - MIR SINE MIR -56 206 12 2159 109 3 16 chr1 34810464 34810767 -247382897 + AluSx SINE Alu 1 299 -13 604 294 99 0 chr1 34810973 34811225 -247382439 - MLT1K LTR MaLR -235 353 77 187 301 167 38 chr1 34811291 34811477 -247382187 - L2 LINE L2 -126 3146 2937 282 56 0 0 chr1 34811487 34811523 -247382141 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2246 104 0 0 chr1 34811523 34811812 -247381852 - AluSx SINE Alu -23 289 1 358 323 84 20 chr1 34811895 34812146 -247381518 - L2 LINE L2 -890 2424 2158 2012 224 88 53 chr1 34812172 34812245 -247381419 + L1ME3 LINE L1 5337 5406 -756 1972 164 0 0 chr1 34812245 34812538 -247381126 + AluJb SINE Alu 1 293 -19 2012 224 88 53 chr1 34812538 34813202 -247380462 + L1ME3 LINE L1 5406 6100 -62 1119 177 0 0 chr1 34813203 34813378 -247380286 + FAM SINE Alu 1 175 0 23 0 0 0 chr1 34813379 34813402 -247380262 + AT_rich Low_complexity Low_complexity 1 23 0 2326 120 0 0 chr1 34813411 34813720 -247379944 + AluSq SINE Alu 1 309 -4 333 340 30 0 chr1 34814046 34814146 -247379518 - L2 LINE L2 -8 3264 3162 268 289 0 12 chr1 34814664 34814747 -247378917 + L1MC/D LINE L1 5797 5878 -1930 1166 143 4 35 chr1 34814979 34815237 -247378427 - AluJb SINE Alu -5 307 1 1625 167 33 7 chr1 34815259 34815597 -247378067 + AluJb SINE Alu 1 345 0 790 162 0 49 chr1 34815601 34815743 -247377921 + AluJo SINE Alu 2 136 -176 2390 50 7 14 chr1 34817160 34817457 -247376207 + AluY SINE Alu 1 295 -16 445 265 52 88 chr1 34817660 34817909 -247375755 + MIR SINE MIR 23 262 0 2451 92 3 6 chr1 34819038 34819352 -247374312 + AluSp SINE Alu 1 313 0 180 0 0 0 chr1 34819557 34819577 -247374087 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1909 136 0 13 chr1 34819626 34819936 -247373728 + AluJb SINE Alu 1 306 -6 741 118 0 0 chr1 34820309 34820411 -247373253 + FRAM SINE Alu 54 155 -21 23 0 0 0 chr1 34820412 34820435 -247373229 + AT_rich Low_complexity Low_complexity 1 23 0 2150 109 0 0 chr1 34820436 34820729 -247372935 + AluSx SINE Alu 1 293 -19 363 282 39 23 chr1 34820732 34820991 -247372673 - L1M4 LINE L1 -3597 2549 2287 875 181 9 86 chr1 34820997 34821207 -247372457 - AluJb SINE Alu -5 307 114 223 300 11 56 chr1 34821305 34821395 -247372269 + L2 LINE L2 3144 3229 -43 2608 196 53 2 chr1 34821511 34822061 -247371603 - L1MD3 LINE L1 -7 7988 7411 2226 109 0 0 chr1 34822073 34822377 -247371287 + AluSx SINE Alu 1 304 -8 269 234 67 31 chr1 34822398 34822544 -247371120 + L1ME4a LINE L1 5823 5962 -159 2396 80 0 3 chr1 34822544 34822856 -247370808 - AluY SINE Alu 0 311 1 269 234 67 31 chr1 34822856 34822898 -247370766 + L1ME4a LINE L1 5962 6103 -18 347 224 206 47 chr1 34822920 34823090 -247370574 + L1ME4a LINE L1 5894 6090 -31 938 177 13 0 chr1 34823095 34823253 -247370411 - FRAM SINE Alu -16 160 1 22 0 0 0 chr1 34823395 34823417 -247370247 + AT_rich Low_complexity Low_complexity 1 22 0 2170 93 6 26 chr1 34823627 34823938 -247369726 - AluSx SINE Alu -7 305 1 456 269 122 21 chr1 34823946 34824184 -247369480 - L1ME1 LINE L1 -284 5882 5614 346 207 30 118 chr1 34824185 34824320 -247369344 - LTR16C LTR ERVL 0 491 369 494 268 21 21 chr1 34824621 34824763 -247368901 - L1ME1 LINE L1 -547 5617 5476 2184 98 0 7 chr1 34824767 34825074 -247368590 - AluSx SINE Alu -1 311 7 1969 116 0 58 chr1 34825079 34825406 -247368258 - AluJb SINE Alu -4 308 1 2011 103 0 0 chr1 34825902 34826174 -247367490 + AluSg SINE Alu 1 272 -38 268 273 0 15 chr1 34826231 34826297 -247367367 + MIR SINE MIR 20 84 -178 180 234 103 37 chr1 34826745 34826852 -247366812 + L2 LINE L2 2360 2473 -841 1946 154 17 100 chr1 34828098 34828577 -247365087 - L1MC3 LINE L1 -484 7301 6863 267 216 225 45 chr1 34829059 34829170 -247364494 + MIR SINE MIR 25 155 -107 647 306 36 0 chr1 34829520 34829716 -247363948 + MIR SINE MIR 48 250 -12 300 239 29 29 chr1 34829982 34830084 -247363580 + MIR SINE MIR 21 123 -85 345 238 19 29 chr1 34830095 34830200 -247363464 - L1MC4 LINE L1 -1325 6717 6614 * 410 216 11 28 chr1 34830116 34830230 -247363434 + L1MC4 LINE L1 1995 6983 -1339 234 380 33 20 chr1 34830274 34830424 -247363240 + MIR SINE MIR 76 227 -35 1772 114 11 37 chr1 34831126 34831249 -247362415 + AluSx SINE Alu 11 136 -176 2020 95 47 3 chr1 34831249 34831545 -247362119 + AluSp SINE Alu 1 309 -4 1772 114 11 37 chr1 34831545 34831694 -247361970 + AluSx SINE Alu 136 276 -36 185 324 86 9 chr1 34831954 34832059 -247361605 + MIR SINE MIR 19 131 -131 2572 122 20 54 chr1 34832064 34832508 -247361156 - Tigger2a DNA MER2_type -4 430 2 255 311 44 0 chr1 34832537 34832627 -247361037 - LTR67 LTR ERVL -8 549 456 445 246 48 75 chr1 34832682 34832869 -247360795 - LTR67 LTR ERVL -256 301 120 797 111 118 7 chr1 34833116 34833242 -247360422 + FRAM SINE Alu 21 164 -148 423 0 0 0 chr1 34833242 34833289 -247360375 + (CA)n Simple_repeat Simple_repeat 2 48 0 439 247 0 11 chr1 34833521 34833614 -247360050 + L2 LINE L2 3138 3229 -43 241 337 72 36 chr1 34833675 34833841 -247359823 + L2 LINE L2 2882 3053 -219 848 275 18 9 chr1 34833902 34834131 -247359533 + MIR SINE MIR 3 233 -29 263 267 9 52 chr1 34834670 34834786 -247358878 + L1ME LINE L1 5743 5853 -268 408 294 43 56 chr1 34834917 34835148 -247358516 - MIR SINE MIR -15 247 20 304 207 24 12 chr1 34835688 34835770 -247357894 - L2 LINE L2 -213 3059 2977 409 236 0 0 chr1 34835774 34835846 -247357818 - FRAM SINE Alu -21 145 74 2171 60 60 0 chr1 34835990 34836271 -247357393 + AluSp SINE Alu 1 298 -15 861 91 0 61 chr1 34836335 34836467 -247357197 + AluSq/x SINE Alu 7 130 -183 1927 129 0 4 chr1 34836579 34836859 -247356805 + AluSx SINE Alu 1 279 -33 228 67 0 0 chr1 34836859 34836889 -247356775 + (CA)n Simple_repeat Simple_repeat 1 30 0 826 253 44 24 chr1 34836890 34837139 -247356525 + HAL1b LINE L1 311 564 -784 1687 159 3 37 chr1 34837260 34837581 -247356083 - AluJb SINE Alu -2 310 1 2136 90 6 10 chr1 34837754 34838065 -247355599 + AluSg SINE Alu 1 310 0 536 127 11 35 chr1 34838206 34838261 -247355403 + L1PA12 LINE L1 5994 6049 -119 1949 131 3 13 chr1 34838261 34838559 -247355105 + AluSx SINE Alu 1 295 -17 536 127 11 35 chr1 34838559 34838663 -247355001 + L1PA12 LINE L1 6049 6168 0 318 259 58 29 chr1 34838812 34838951 -247354713 + L1ME LINE L1 4026 4168 -1978 262 277 27 0 chr1 34838951 34839063 -247354601 - HAL1 LINE L1 -364 2143 2029 190 343 176 0 chr1 34839098 34839206 -247354458 - MIR SINE MIR -77 185 59 2393 30 40 0 chr1 34839206 34839503 -247354161 - AluY SINE Alu -2 309 1 203 294 39 49 chr1 34839718 34839820 -247353844 + L2 LINE L2 2875 2975 -339 351 0 0 0 chr1 34840144 34840183 -247353481 + (TC)n Simple_repeat Simple_repeat 1 39 0 194 283 67 0 chr1 34840200 34840260 -247353404 - L2 LINE L2 0 3272 3209 604 250 61 0 chr1 34840269 34840433 -247353231 + MER91A DNA MER1_type 23 196 0 322 293 37 0 chr1 34840434 34840516 -247353148 - L2 LINE L2 -69 3203 3119 298 339 119 8 chr1 34840535 34840653 -247353011 - MIR SINE MIR -61 147 17 472 266 136 56 chr1 34841008 34841231 -247352433 + L1ME LINE L1 4377 4581 -1565 1489 157 3 74 chr1 34841231 34841387 -247352277 + AluJo SINE Alu 1 124 -188 2287 74 10 19 chr1 34841387 34841697 -247351967 + AluSq SINE Alu 1 307 -6 1489 157 3 74 chr1 34841697 34841864 -247351800 + AluJo SINE Alu 124 301 -11 472 266 136 56 chr1 34841864 34841971 -247351693 + L1ME LINE L1 4581 4678 -1468 1153 101 10 30 chr1 34841971 34842169 -247351495 - L1MB3 LINE L1 -3 6180 5987 472 266 136 56 chr1 34842169 34842445 -247351219 + L1ME LINE L1 4678 5048 -1098 2355 98 141 5 chr1 34843203 34843580 -247350084 - MSTA LTR MaLR 0 428 1 670 291 100 17 chr1 34843867 34844218 -247349446 + L1ME LINE L1 5259 5638 -483 572 201 48 109 chr1 34844340 34844704 -247348960 - L2 LINE L2 -232 3081 2736 213 39 0 0 chr1 34844921 34844947 -247348717 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2207 99 7 0 chr1 34844989 34845291 -247348373 + AluSx SINE Alu 1 304 -8 247 301 0 11 chr1 34845358 34845500 -247348164 + GA-rich Low_complexity Low_complexity 1 140 0 667 276 60 24 chr1 34846164 34846414 -247347250 + LTR16C LTR ERVL 97 355 -136 332 245 75 0 chr1 34846415 34846521 -247347143 - L1MC5 LINE L1 -500 7461 7348 1178 258 33 36 chr1 34846664 34846998 -247346666 + LTR16C LTR ERVL 159 491 0 1307 229 60 74 chr1 34847129 34847650 -247346014 - L1MC4 LINE L1 -737 7224 6773 2141 126 0 0 chr1 34847650 34847952 -247345712 - AluSg SINE Alu -8 302 1 1307 229 60 74 chr1 34847952 34848307 -247345357 - L1MC4 LINE L1 -1188 6773 6415 1363 153 0 0 chr1 34848396 34848618 -247345046 - AluJb SINE Alu -90 222 1 675 206 56 19 chr1 34848624 34848784 -247344880 - L1MC4 LINE L1 -2047 5761 5596 1716 96 96 28 chr1 34848791 34849073 -247344591 - AluY SINE Alu -10 301 1 2702 29 0 0 chr1 34849084 34849393 -247344271 - AluY SINE Alu -2 309 1 5235 49 0 2 chr1 34849395 34850023 -247343641 - L1PA5 LINE L1 -6 6148 5522 2109 92 27 0 chr1 34850079 34850371 -247343293 + AluSx SINE Alu 1 300 -12 216 86 0 0 chr1 34850377 34850412 -247343252 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1359 201 72 0 chr1 34850429 34850543 -247343121 + AluJb SINE Alu 6 110 -202 198 0 0 0 chr1 34850543 34850565 -247343099 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1359 201 72 0 chr1 34850565 34850729 -247342935 + AluJb SINE Alu 110 304 -8 367 284 140 32 chr1 34850735 34850985 -247342679 + L1 LINE L1 3241 3517 -2629 251 272 10 0 chr1 34850992 34851095 -247342569 + CT-rich Low_complexity Low_complexity 1 104 0 511 209 18 9 chr1 34851141 34851251 -247342413 + MLT1A1 LTR MaLR 1 111 -254 1239 151 0 5 chr1 34851254 34851459 -247342205 + AluJb SINE Alu 86 289 -23 2040 90 18 0 chr1 34851461 34851775 -247341889 + AluSp SINE Alu 1 319 0 1032 155 7 145 chr1 34851783 34852073 -247341591 + MLT1A1 LTR MaLR 116 365 0 183 286 48 0 chr1 34852314 34852377 -247341287 - MIR SINE MIR -117 145 80 250 290 112 47 chr1 34852611 34852718 -247340946 - L2 LINE L2 -7 3306 3193 325 280 160 0 chr1 34852972 34853072 -247340592 + MIR SINE MIR 12 127 -135 2816 206 105 125 chr1 34853146 34853609 -247340055 - L2 LINE L2 -7 3306 2835 2206 119 0 0 chr1 34853609 34853919 -247339745 + AluSg SINE Alu 1 310 0 2816 206 105 125 chr1 34853919 34854389 -247339275 - L2 LINE L2 -478 2835 2357 882 136 14 0 chr1 34854389 34854560 -247339104 - FRAM SINE Alu 0 172 1 2816 206 105 125 chr1 34854560 34855243 -247338421 - L2 LINE L2 -956 2357 1575 334 267 10 20 chr1 34855244 34855345 -247338319 - L2 LINE L2 -1990 1324 1225 339 208 0 73 chr1 34855348 34855444 -247338220 + MIR SINE MIR 174 262 0 240 170 19 38 chr1 34856314 34856351 -247337313 - MLT2B3 LTR ERVL 0 554 517 243 0 0 0 chr1 34856351 34856378 -247337286 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 240 170 19 38 chr1 34856378 34856393 -247337271 - MLT2B3 LTR ERVL -37 517 503 606 69 38 38 chr1 34856408 34856567 -247337097 + (TAGA)n Simple_repeat Simple_repeat 4 162 0 2102 127 0 0 chr1 34856574 34856881 -247336783 + AluSx SINE Alu 4 310 -2 204 185 19 19 chr1 34856890 34856944 -247336720 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 2951 159 64 2 chr1 34856944 34857429 -247336235 - MLT2B3 LTR ERVL -39 515 1 1684 145 7 45 chr1 34857479 34857789 -247335875 + AluJo SINE Alu 3 300 -12 253 236 0 0 chr1 34858106 34858161 -247335503 - MIR SINE MIR -6 256 202 2029 124 0 7 chr1 34858264 34858563 -247335101 - AluSx SINE Alu -15 297 1 1325 213 37 67 chr1 34858583 34858959 -247334705 + MLT1A1 LTR MaLR 1 365 0 204 205 0 0 chr1 34859030 34859069 -247334595 + MIR SINE MIR 112 150 -112 1202 169 127 15 chr1 34859277 34859544 -247334120 + AluJo SINE Alu 2 298 -14 326 235 42 42 chr1 34859611 34859730 -247333934 + L1 LINE L1 3742 3860 -2286 400 318 81 28 chr1 34859757 34860288 -247333376 + L1 LINE L1 3773 4331 -1815 2037 131 0 0 chr1 34860315 34860606 -247333058 + AluSx SINE Alu 1 291 -21 244 226 0 0 chr1 34860842 34860895 -247332769 + L1 LINE L1 4733 4785 -1361 1955 122 3 0 chr1 34860919 34861207 -247332457 + AluSx SINE Alu 1 289 -23 414 57 0 0 chr1 34861219 34861272 -247332392 + (TA)n Simple_repeat Simple_repeat 1 53 0 2179 225 43 47 chr1 34861278 34861830 -247331834 - MER74B LTR ERVL -18 604 55 427 312 84 30 chr1 34861831 34861991 -247331673 + L1ME LINE L1 4784 4963 -1183 2103 107 0 10 chr1 34861991 34862299 -247331365 + AluSx SINE Alu 1 305 -7 427 312 84 30 chr1 34862299 34862375 -247331289 + L1ME LINE L1 4963 5033 -1113 280 227 0 0 chr1 34862429 34862495 -247331169 - MER53 DNA DNA -68 121 56 1573 172 0 86 chr1 34862499 34862700 -247330964 + MER49 LTR ERV1 5 167 -756 1799 130 0 7 chr1 34862700 34862970 -247330694 + AluSx SINE Alu 5 272 -40 1573 172 0 86 chr1 34862970 34863105 -247330559 + MER49 LTR ERV1 167 312 -611 800 141 0 90 chr1 34863106 34863262 -247330402 + FLAM_C SINE Alu 2 143 0 3265 167 42 32 chr1 34863262 34863277 -247330387 + MER49 LTR ERV1 296 309 -614 1571 130 37 83 chr1 34863277 34863601 -247330063 + AluSg SINE Alu 1 309 -1 3265 167 42 32 chr1 34863601 34864207 -247329457 + MER49 LTR ERV1 309 923 0 352 155 17 0 chr1 34864207 34864265 -247329399 - MER53 DNA DNA -130 59 1 1962 128 0 10 chr1 34864388 34864693 -247328971 + AluJo SINE Alu 1 302 -10 318 291 205 25 chr1 34864830 34865499 -247328165 + L2 LINE L2 1813 2601 -713 2279 85 0 3 chr1 34865568 34865862 -247327802 + AluSq SINE Alu 1 293 -20 270 276 99 75 chr1 34865867 34866161 -247327503 + L1ME LINE L1 5355 5655 -466 360 253 133 42 chr1 34866165 34866331 -247327333 - MIR SINE MIR -36 226 46 377 183 0 0 chr1 34866634 34866694 -247326970 - MER63 DNA MER1_type -322 738 679 1518 188 0 41 chr1 34866971 34867115 -247326549 + AluJo SINE Alu 3 151 -161 1836 154 27 0 chr1 34867115 34867408 -247326256 + AluSx SINE Alu 1 301 -11 1518 188 0 41 chr1 34867408 34867582 -247326082 + AluJo SINE Alu 151 308 -4 576 244 37 30 chr1 34867919 34868083 -247325581 + MER63A DNA MER1_type 45 209 -1 493 263 189 6 chr1 34868292 34868467 -247325197 - L2 LINE L2 0 3313 3107 2178 99 0 10 chr1 34868491 34868785 -247324879 + AluSx SINE Alu 2 292 -20 1183 102 0 18 chr1 34868786 34868953 -247324711 + AluSg/x SINE Alu 134 297 -15 698 288 78 46 chr1 34868953 34869259 -247324405 - L2 LINE L2 -230 3083 2788 2338 104 0 0 chr1 34869259 34869566 -247324098 - AluSx SINE Alu -5 307 1 698 288 78 46 chr1 34869566 34869642 -247324022 - L2 LINE L2 -525 2788 2716 1620 111 4 45 chr1 34869642 34869885 -247323779 + AluSg SINE Alu 49 319 0 301 53 0 0 chr1 34869885 34869923 -247323741 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 698 288 78 46 chr1 34869923 34869945 -247323719 - L2 LINE L2 -597 2716 2696 1772 157 3 20 chr1 34869945 34870250 -247323414 + AluJb SINE Alu 1 300 -12 698 288 78 46 chr1 34870250 34870529 -247323135 - L2 LINE L2 -617 2696 2352 495 110 0 0 chr1 34870540 34870633 -247323031 - L1MDa LINE L1 -4605 1935 1859 256 287 0 30 chr1 34870655 34870756 -247322908 + L1MEc LINE L1 1646 1743 -4653 2007 152 0 10 chr1 34870764 34870895 -247322769 + AluJb SINE Alu 5 136 -176 2245 95 0 10 chr1 34870895 34871190 -247322474 + AluSc SINE Alu 1 292 -17 2007 152 0 10 chr1 34871190 34871368 -247322296 + AluJb SINE Alu 136 311 -1 1894 143 14 0 chr1 34871381 34871688 -247321976 - AluSq SINE Alu 0 311 1 370 218 26 103 chr1 34871757 34871869 -247321795 + L1MEc LINE L1 2232 2330 -3885 1564 178 9 44 chr1 34871869 34872184 -247321480 + AluJb SINE Alu 1 304 -8 370 218 26 103 chr1 34872184 34872227 -247321437 + L1MEc LINE L1 2330 2375 -3840 1402 211 71 50 chr1 34872228 34872607 -247321057 - MSTD LTR MaLR -9 387 1 1093 260 46 72 chr1 34872637 34872783 -247320881 + L1MEc LINE L1 2385 2533 -3682 1991 126 0 52 chr1 34872783 34873109 -247320555 - AluSq SINE Alu -4 309 1 1093 260 46 72 chr1 34873109 34873620 -247320044 + L1MEc LINE L1 2533 3024 -3191 2303 112 0 3 chr1 34874130 34874442 -247319222 - AluSx SINE Alu -1 311 1 1426 172 0 117 chr1 34874467 34874656 -247319008 - AluJb SINE Alu -8 304 171 327 49 0 0 chr1 34874656 34874697 -247318967 + (TG)n Simple_repeat Simple_repeat 2 42 0 1426 172 0 117 chr1 34874697 34874850 -247318814 - AluJb SINE Alu -141 171 2 952 216 108 4 chr1 34874890 34875140 -247318524 + LTR16C LTR ERVL 202 477 -14 777 283 26 4 chr1 34875707 34875933 -247317731 + MIR SINE MIR 20 250 -12 625 206 45 81 chr1 34875947 34876031 -247317633 + L1ME2 LINE L1 5695 5781 -340 1939 136 34 14 chr1 34876031 34876325 -247317339 + AluSx SINE Alu 1 300 -12 625 206 45 81 chr1 34876325 34876487 -247317177 + L1ME2 LINE L1 5781 5932 -189 1968 131 0 10 chr1 34876497 34876788 -247316876 + AluSx SINE Alu 1 288 -24 296 281 65 29 chr1 34876845 34876984 -247316680 + HAL1b LINE L1 1192 1335 -13 2161 103 43 0 chr1 34877017 34877299 -247316365 + AluSg SINE Alu 2 295 -15 241 290 234 0 chr1 34877379 34877503 -247316161 + MIR SINE MIR 86 238 -24 235 150 33 0 chr1 34877681 34877741 -247315923 + GA-rich Low_complexity Low_complexity 1 62 0 231 225 14 159 chr1 34877966 34878104 -247315560 + MER5A DNA MER1_type 70 187 -2 246 249 27 131 chr1 34878309 34878606 -247315058 + L1MC4a LINE L1 5788 6053 -1755 2447 86 0 0 chr1 34879216 34879517 -247314147 + AluSg SINE Alu 3 303 -7 2296 208 14 54 chr1 34879524 34879855 -247313809 + L1ME1 LINE L1 5609 5909 -257 2633 56 0 3 chr1 34879855 34880160 -247313504 + AluY SINE Alu 1 304 -7 2296 208 14 54 chr1 34880160 34880404 -247313260 + L1ME1 LINE L1 5909 6161 -5 465 219 21 0 chr1 34880468 34880564 -247313100 + L1ME2 LINE L1 6024 6121 -43 1983 144 3 16 chr1 34880566 34880879 -247312785 - AluJb SINE Alu -3 309 1 606 247 169 25 chr1 34881047 34881418 -247312246 - L2 LINE L2 -167 3146 2830 2443 68 3 0 chr1 34881418 34881710 -247311954 - AluSp SINE Alu -20 293 1 606 247 169 25 chr1 34881710 34881897 -247311767 - L2 LINE L2 -483 2830 2452 1660 159 0 39 chr1 34882043 34882326 -247311338 + AluJo SINE Alu 1 272 -40 553 254 69 0 chr1 34882477 34882607 -247311057 + MER20B DNA MER1_type 96 234 -549 2112 104 0 0 chr1 34882642 34882911 -247310753 + AluSx SINE Alu 1 269 -43 779 220 101 10 chr1 34882911 34883120 -247310544 + MER20B DNA MER1_type 413 640 -143 622 251 74 11 chr1 34883165 34883340 -247310324 - MIR SINE MIR -72 190 5 254 171 53 40 chr1 34883348 34883424 -247310240 + MER20B DNA MER1_type 677 753 -30 2292 97 7 0 chr1 34883581 34883889 -247309775 - AluSx SINE Alu -2 310 1 2105 138 11 28 chr1 34884081 34884442 -247309222 - L1MB5 LINE L1 -8 6166 5812 4360 141 48 68 chr1 34884455 34884824 -247308840 - L1MB5 LINE L1 -8 6166 5791 2328 104 0 13 chr1 34884824 34885131 -247308533 - AluSx SINE Alu -9 303 1 4360 141 48 68 chr1 34885131 34885271 -247308393 - L1MB5 LINE L1 -383 5791 5650 2393 80 7 0 chr1 34885271 34885572 -247308092 - AluSp SINE Alu 0 313 11 4360 141 48 68 chr1 34885572 34885963 -247307701 - L1MB5 LINE L1 -524 5650 5283 23 0 0 0 chr1 34885974 34885997 -247307667 + AT_rich Low_complexity Low_complexity 1 23 0 2389 90 6 10 chr1 34885997 34886309 -247307355 + AluSq SINE Alu 1 311 -2 224 282 97 10 chr1 34886441 34886544 -247307120 - L2 LINE L2 -585 2729 2618 1130 137 0 33 chr1 34886675 34886692 -247306972 + MLT1C LTR MaLR 1 17 -450 2040 135 96 3 chr1 34886692 34887026 -247306638 - MLT1A1 LTR MaLR 0 365 1 1130 137 0 33 chr1 34887026 34887190 -247306474 + MLT1C LTR MaLR 17 176 -291 1725 107 9 0 chr1 34887197 34887421 -247306243 + AluSg/x SINE Alu 71 296 -16 468 221 0 25 chr1 34887424 34887546 -247306118 - MIR SINE MIR -140 122 4 1514 171 0 4 chr1 34887646 34887891 -247305773 + AluJb SINE Alu 5 248 -64 1997 123 7 7 chr1 34887892 34888185 -247305479 + AluJb SINE Alu 5 297 -15 679 284 47 55 chr1 34888191 34888571 -247305093 - L2 LINE L2 -850 2464 2088 3443 163 94 71 chr1 34888754 34888830 -247304834 - MER63C DNA MER1_type -139 921 848 2344 99 3 0 chr1 34888830 34889123 -247304541 - AluSp SINE Alu -19 294 1 3443 163 94 71 chr1 34889123 34889559 -247304105 - MER63C DNA MER1_type -212 848 380 1548 198 29 0 chr1 34889559 34889832 -247303832 + AluJo SINE Alu 1 281 -31 3443 163 94 71 chr1 34889832 34890172 -247303492 - MER63C DNA MER1_type -680 380 49 317 304 0 0 chr1 34890172 34890264 -247303400 + (TA)n Simple_repeat Simple_repeat 2 93 0 252 337 22 0 chr1 34890602 34890694 -247302970 - L2 LINE L2 -2868 446 353 415 288 50 0 chr1 34890735 34890874 -247302790 + MIR SINE MIR 4 149 -113 2531 60 0 3 chr1 34890923 34891224 -247302440 + AluY SINE Alu 1 300 -11 5465 153 24 24 chr1 34891233 34892397 -247301267 + L1PA16 LINE L1 4150 5323 -843 2013 161 0 0 chr1 34892397 34892701 -247300963 + AluJo SINE Alu 1 304 -8 5465 153 24 24 chr1 34892701 34893351 -247300313 + L1PA16 LINE L1 5323 5971 -195 2035 141 0 3 chr1 34893351 34893641 -247300023 + AluSx SINE Alu 1 289 -23 2263 106 0 0 chr1 34893680 34893973 -247299691 + AluSg SINE Alu 5 297 -13 271 259 215 63 chr1 34895232 34895283 -247298381 + MIR SINE MIR 4 46 -216 2263 109 6 3 chr1 34895283 34895595 -247298069 - AluSq SINE Alu 0 313 1 271 259 215 63 chr1 34895595 34895775 -247297889 + MIR SINE MIR 46 262 0 2525 74 3 0 chr1 34896025 34896335 -247297329 + AluY SINE Alu 1 311 0 231 284 32 21 chr1 34896706 34896801 -247296863 - MER5B DNA MER1_type -76 102 7 1171 150 0 0 chr1 34896832 34896999 -247296665 - AluJb SINE Alu -87 225 59 451 269 43 28 chr1 34896999 34897140 -247296524 + L2 LINE L2 3138 3280 -33 2258 118 0 0 chr1 34897519 34897816 -247295848 + AluSx SINE Alu 1 297 -15 231 193 0 53 chr1 34897837 34897894 -247295770 - MLT1K LTR MaLR -353 235 182 572 209 2 36 chr1 34898053 34898197 -247295467 - L1MB2 LINE L1 -27 6144 6022 1179 152 24 80 chr1 34898218 34898468 -247295196 - L1MB2 LINE L1 -516 5668 5433 523 287 69 46 chr1 34898605 34898753 -247294911 - L2 LINE L2 -3 3310 3154 2292 97 19 13 chr1 34898753 34899063 -247294601 + AluSp SINE Alu 1 312 -1 523 287 69 46 chr1 34899063 34899130 -247294534 - L2 LINE L2 -159 3154 3090 222 284 53 0 chr1 34899263 34899358 -247294306 - L2 LINE L2 -1201 2113 2014 1761 180 109 33 chr1 34899362 34899813 -247293851 - MLT1D LTR MaLR 0 505 21 197 188 145 29 chr1 34899845 34899914 -247293750 - L2 LINE L2 -1298 2016 1940 572 211 0 0 chr1 34899916 34900020 -247293644 + FLAM_C SINE Alu 5 108 -35 2303 92 0 0 chr1 34900028 34900331 -247293333 + AluSx SINE Alu 1 303 0 189 0 0 0 chr1 34900354 34900375 -247293289 + (A)n Simple_repeat Simple_repeat 1 21 0 404 57 38 0 chr1 34900375 34900428 -247293236 - AluSp/q SINE Alu -19 294 240 1522 96 5 0 chr1 34900429 34900626 -247293038 - AluSx SINE Alu -114 198 1 935 160 60 0 chr1 34900636 34900786 -247292878 + FRAM SINE Alu 1 154 -22 1372 249 224 51 chr1 34900790 34900819 -247292845 - L2 LINE L2 -1377 1937 1914 1946 128 44 3 chr1 34900819 34901116 -247292548 - AluSx SINE Alu -3 309 1 1372 249 224 51 chr1 34901116 34901460 -247292204 - L2 LINE L2 -1400 1914 1631 2346 94 7 0 chr1 34901460 34901757 -247291907 + AluSg SINE Alu 1 299 -11 1372 249 224 51 chr1 34901757 34901984 -247291680 - L2 LINE L2 -1683 1631 1445 889 183 12 18 chr1 34901984 34902148 -247291516 - FAM SINE Alu -11 164 2 1372 249 224 51 chr1 34902148 34902388 -247291276 - L2 LINE L2 -1869 1445 949 973 184 10 46 chr1 34902397 34902593 -247291071 - AluJb SINE Alu -38 274 86 359 253 0 22 chr1 34902915 34903006 -247290658 + FAM SINE Alu 82 170 -5 1699 173 20 23 chr1 34903256 34903557 -247290107 - AluJb SINE Alu -12 300 1 438 20 0 0 chr1 34903934 34903985 -247289679 + (CA)n Simple_repeat Simple_repeat 1 51 0 766 0 21 0 chr1 34905311 34905405 -247288259 + (TA)n Simple_repeat Simple_repeat 2 97 0 208 135 0 0 chr1 34905413 34905450 -247288214 + (T)n Simple_repeat Simple_repeat 1 37 0 2423 68 7 3 chr1 34906591 34906883 -247286781 + AluSc SINE Alu 1 293 -16 1782 136 3 58 chr1 34907483 34907793 -247285871 - AluJb SINE Alu -19 293 1 201 74 0 0 chr1 34910568 34910595 -247283069 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2007 68 0 8 chr1 34910596 34910859 -247282805 - L1P5 LINE L1 -481 5670 5410 1678 168 25 4 chr1 34911288 34911562 -247282102 - AluJb SINE Alu -32 280 1 1070 174 12 0 chr1 34912553 34912720 -247280944 - AluJb SINE Alu -11 301 133 1552 208 44 7 chr1 34912726 34913024 -247280640 - AluJb SINE Alu -3 309 1 24 0 0 0 chr1 34913186 34913210 -247280454 + AT_rich Low_complexity Low_complexity 1 24 0 2485 78 0 3 chr1 34913261 34913570 -247280094 + AluSg SINE Alu 1 308 -2 706 256 47 35 chr1 34913654 34913953 -247279711 + L1ME LINE L1 5520 5823 -298 302 179 35 14 chr1 34914729 34914811 -247278853 + MIR SINE MIR 84 144 -64 2145 73 91 0 chr1 34914891 34915165 -247278499 + AluSc SINE Alu 1 299 -10 2293 81 10 0 chr1 34915166 34915461 -247278203 + AluY SINE Alu 1 298 -13 416 257 74 20 chr1 34915664 34915812 -247277852 + MIR SINE MIR 23 178 -84 2419 95 3 0 chr1 34917042 34917348 -247276316 + AluSp SINE Alu 1 307 -6 2378 105 3 0 chr1 34917359 34917664 -247276000 + AluSp SINE Alu 1 306 -7 2360 103 0 0 chr1 34917734 34918035 -247275629 - AluSx SINE Alu -11 301 1 328 280 21 21 chr1 34918415 34918508 -247275156 - MIR SINE MIR -75 133 41 2177 104 14 0 chr1 34919400 34919689 -247273975 + AluSp SINE Alu 1 293 -20 216 338 0 13 chr1 34919703 34919780 -247273884 - MIR SINE MIR -85 123 48 462 18 0 0 chr1 34919780 34919835 -247273829 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 1737 153 28 0 chr1 34919837 34920119 -247273545 - AluJb SINE Alu -22 290 1 1987 111 75 0 chr1 34920126 34920406 -247273258 - AluSg SINE Alu -9 301 1 1794 126 3 69 chr1 34920408 34920527 -247273137 - AluJo SINE Alu -16 296 171 2870 10 0 0 chr1 34920527 34920831 -247272833 - AluY SINE Alu -7 304 1 1794 126 3 69 chr1 34920831 34921028 -247272636 - AluJo SINE Alu -141 171 1 262 289 44 9 chr1 34922110 34922224 -247271440 + L1MC4a LINE L1 5796 5913 -1895 2320 67 0 20 chr1 34922670 34922969 -247270695 + AluY SINE Alu 1 293 -18 2036 106 53 7 chr1 34923064 34923347 -247270317 + AluSc SINE Alu 4 299 -10 183 42 0 0 chr1 34923347 34923371 -247270293 + (TA)n Simple_repeat Simple_repeat 2 25 0 874 273 177 37 chr1 34923842 34924365 -247269299 - L2 LINE L2 -1 3312 2646 2415 102 0 38 chr1 34924365 34924737 -247268927 + L1PA15 LINE L1 5808 6165 0 874 273 177 37 chr1 34924737 34924953 -247268711 - L2 LINE L2 -667 2646 2462 28 0 0 0 chr1 34925345 34925373 -247268291 + AT_rich Low_complexity Low_complexity 1 28 0 227 71 91 40 chr1 34925378 34925477 -247268187 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 2324 109 10 0 chr1 34925615 34925918 -247267746 + AluSx SINE Alu 1 306 -6 2478 50 7 7 chr1 34927254 34927552 -247266112 + AluY SINE Alu 1 298 -13 1670 155 8 0 chr1 34930198 34930463 -247263201 - AluJb SINE Alu -11 301 35 1692 141 44 11 chr1 34930673 34930943 -247262721 + AluSx SINE Alu 27 305 -7 188 211 141 0 chr1 34930968 34931039 -247262625 + MIR SINE MIR 122 202 -60 2226 101 10 3 chr1 34931175 34931481 -247262183 + AluSq SINE Alu 1 308 -5 341 250 40 81 chr1 34932685 34932833 -247260831 + MIR SINE MIR 3 144 -118 1495 143 26 4 chr1 34933056 34933286 -247260378 - AluJb SINE Alu -77 235 1 1497 115 0 5 chr1 34933368 34933568 -247260096 + AluSx SINE Alu 16 214 -98 248 78 0 59 chr1 34933568 34933619 -247260045 + AluSx SINE Alu 256 303 0 281 30 0 0 chr1 34933668 34933701 -247259963 + U2 snRNA snRNA 1 33 -155 230 293 6 44 chr1 34934802 34934983 -247258681 + C-rich Low_complexity Low_complexity 4 177 0 25 0 0 0 chr1 34935046 34935071 -247258593 + GC_rich Low_complexity Low_complexity 1 25 0 33 25 0 0 chr1 34935138 34935178 -247258486 + GC_rich Low_complexity Low_complexity 1 40 0 544 281 48 30 chr1 34935296 34935463 -247258201 + MLT1K LTR MaLR 127 296 -292 242 279 75 34 chr1 34935515 34935662 -247258002 - L2 LINE L2 -1004 2310 2158 1174 192 18 9 chr1 34935761 34935980 -247257684 + AluJb SINE Alu 1 221 -91 766 0 21 0 chr1 34936086 34936180 -247257484 + (TA)n Simple_repeat Simple_repeat 2 97 0 208 135 0 0 chr1 34936188 34936225 -247257439 + (T)n Simple_repeat Simple_repeat 1 37 0 2413 69 7 3 chr1 34937366 34937657 -247256007 + AluSc SINE Alu 1 292 -17 1782 136 3 58 chr1 34938257 34938567 -247255097 - AluJb SINE Alu -19 293 1 201 74 0 0 chr1 34941342 34941369 -247252295 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2007 68 0 8 chr1 34941370 34941633 -247252031 - L1P5 LINE L1 -481 5670 5410 1678 168 25 4 chr1 34942062 34942336 -247251328 - AluJb SINE Alu -32 280 1 1070 174 12 0 chr1 34943327 34943494 -247250170 - AluJb SINE Alu -11 301 133 1552 208 44 7 chr1 34943500 34943798 -247249866 - AluJb SINE Alu -3 309 1 24 0 0 0 chr1 34943960 34943984 -247249680 + AT_rich Low_complexity Low_complexity 1 24 0 2485 78 0 3 chr1 34944035 34944344 -247249320 + AluSg SINE Alu 1 308 -2 706 256 47 35 chr1 34944428 34944727 -247248937 + L1ME LINE L1 5520 5823 -298 302 179 35 14 chr1 34945503 34945585 -247248079 + MIR SINE MIR 84 144 -64 2145 73 91 0 chr1 34945665 34945939 -247247725 + AluSc SINE Alu 1 299 -10 2293 81 10 0 chr1 34945940 34946235 -247247429 + AluY SINE Alu 1 298 -13 416 257 74 20 chr1 34946438 34946586 -247247078 + MIR SINE MIR 23 178 -84 2419 95 3 0 chr1 34947816 34948122 -247245542 + AluSp SINE Alu 1 307 -6 2435 86 3 0 chr1 34948133 34948437 -247245227 + AluSx SINE Alu 1 305 -7 861 190 6 0 chr1 34948530 34948688 -247244976 + L1MA10 LINE L1 6169 6327 -7 465 219 21 0 chr1 34948745 34948841 -247244823 + L1ME2 LINE L1 6024 6121 -43 1983 144 3 16 chr1 34948843 34949156 -247244508 - AluJb SINE Alu -3 309 1 606 247 169 25 chr1 34949324 34949695 -247243969 - L2 LINE L2 -167 3146 2830 2443 68 3 0 chr1 34949695 34949987 -247243677 - AluSp SINE Alu -20 293 1 606 247 169 25 chr1 34949987 34950174 -247243490 - L2 LINE L2 -483 2830 2452 1660 159 0 39 chr1 34950320 34950603 -247243061 + AluJo SINE Alu 1 272 -40 553 254 69 0 chr1 34950754 34950884 -247242780 + MER20B DNA MER1_type 96 234 -549 2112 104 0 0 chr1 34950919 34951188 -247242476 + AluSx SINE Alu 1 269 -43 779 220 101 10 chr1 34951188 34951397 -247242267 + MER20B DNA MER1_type 413 640 -143 622 251 74 11 chr1 34951442 34951617 -247242047 - MIR SINE MIR -72 190 5 254 171 53 40 chr1 34951625 34951701 -247241963 + MER20B DNA MER1_type 677 753 -30 2245 94 7 7 chr1 34951858 34952165 -247241499 - AluSx SINE Alu -2 310 4 2091 141 11 28 chr1 34952359 34952720 -247240944 - L1MB5 LINE L1 -8 6166 5812 2479 70 3 3 chr1 34952836 34953138 -247240526 - AluSp SINE Alu -11 302 1 2208 94 0 7 chr1 34953410 34953698 -247239966 + AluSg SINE Alu 1 286 -24 2425 39 0 7 chr1 34953705 34954010 -247239654 + AluY SINE Alu 1 303 0 2187 93 0 81 chr1 34954020 34954354 -247239310 + AluSx SINE Alu 1 307 -5 1905 134 72 0 chr1 34954499 34954791 -247238873 + AluSq SINE Alu 1 313 0 457 228 24 24 chr1 34954807 34954930 -247238734 + L1ME3A LINE L1 5807 5929 -241 1939 129 7 0 chr1 34954993 34955299 -247238365 - AluSg SINE Alu 0 308 1 194 0 39 0 chr1 34955309 34955335 -247238329 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2564 171 129 75 chr1 34955336 34955359 -247238305 + L1MD2 LINE L1 5591 5611 -748 1284 137 95 141 chr1 34955359 34955665 -247237999 + AluJo SINE Alu 1 292 -20 2564 171 129 75 chr1 34955665 34956356 -247237308 + L1MD2 LINE L1 5611 6343 -16 1896 119 0 102 chr1 34956845 34957180 -247236484 - AluSx SINE Alu 0 302 2 1744 77 39 166 chr1 34957186 34957524 -247236140 - AluSc SINE Alu -10 299 5 2308 85 0 10 chr1 34957839 34958133 -247235531 + AluSc SINE Alu 1 291 -18 243 330 23 0 chr1 34958305 34958393 -247235271 - MIR SINE MIR -170 92 3 428 282 0 0 chr1 34958537 34958647 -247235017 + MIR SINE MIR 47 156 -106 2305 102 0 3 chr1 34959200 34959494 -247234170 + AluSx SINE Alu 1 293 -19 1756 150 0 59 chr1 34959537 34959857 -247233807 - AluJo SINE Alu -11 301 1 251 297 159 22 chr1 34959859 34960041 -247233623 + MIR SINE MIR 46 252 -10 915 173 25 19 chr1 34960050 34960212 -247233452 + FRAM SINE Alu 2 164 -2 1885 148 14 3 chr1 34960220 34960510 -247233154 + AluJo SINE Alu 5 297 -15 2415 108 0 0 chr1 34960524 34960830 -247232834 - AluSx SINE Alu -6 306 1 438 181 17 9 chr1 34960890 34961006 -247232658 + CT-rich Low_complexity Low_complexity 4 120 0 1434 182 8 23 chr1 34961012 34961150 -247232514 - AluJo SINE Alu -52 260 126 267 54 0 0 chr1 34961150 34961187 -247232477 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1434 182 8 23 chr1 34961187 34961312 -247232352 - AluJo SINE Alu -186 126 1 1732 167 38 0 chr1 34961401 34961688 -247231976 - AluJo SINE Alu -14 298 1 2182 118 0 0 chr1 34962028 34962325 -247231339 - AluSx SINE Alu -15 297 1 988 96 0 0 chr1 34962337 34962462 -247231202 - AluSq/x SINE Alu -188 125 1 2193 106 0 20 chr1 34963070 34963373 -247230291 + AluSx SINE Alu 10 306 -6 770 173 119 18 chr1 34963432 34963600 -247230064 + MER5A DNA MER1_type 1 185 -4 221 81 0 27 chr1 34963693 34963730 -247229934 + (TA)n Simple_repeat Simple_repeat 1 36 0 2373 77 6 26 chr1 34963876 34964189 -247229475 - AluY SINE Alu -4 307 1 32 26 0 0 chr1 34964306 34964345 -247229319 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr1 34964757 34964793 -247228871 + AT_rich Low_complexity Low_complexity 1 36 0 2184 121 0 0 chr1 34964803 34965093 -247228571 + AluSg SINE Alu 1 290 -20 520 123 385 8 chr1 34965093 34965204 -247228460 - AluJo/FRAM SINE Alu -14 298 136 275 143 0 0 chr1 34965214 34965256 -247228408 - AluJ/FLAM SINE Alu -225 77 36 583 157 20 0 chr1 34965258 34965360 -247228304 - AluJb SINE Alu -33 279 176 2308 118 0 0 chr1 34965387 34965692 -247227972 - AluSx SINE Alu -6 306 2 23 0 0 0 chr1 34965695 34965718 -247227946 + AT_rich Low_complexity Low_complexity 1 23 0 705 241 83 29 chr1 34965766 34966044 -247227620 - LTR33 LTR ERVL -2 519 227 2359 97 7 0 chr1 34966059 34966358 -247227306 + AluSx SINE Alu 1 301 -11 1365 330 34 21 chr1 34966393 34966951 -247226713 - ERVL LTR ERVL -405 5359 4795 718 197 0 0 chr1 34967036 34967168 -247226496 - FLAM_C SINE Alu 0 133 2 1663 137 76 4 chr1 34967723 34967986 -247225678 + AluSx SINE Alu 1 282 -30 397 266 63 21 chr1 34968215 34968358 -247225306 + MIR SINE MIR 17 165 -97 25 75 0 0 chr1 34968650 34968703 -247224961 + AT_rich Low_complexity Low_complexity 1 53 0 2217 124 0 0 chr1 34968932 34969230 -247224434 + AluSx SINE Alu 1 298 -14 534 237 75 40 chr1 34969232 34969307 -247224357 + MIR SINE MIR 28 99 -163 2336 73 3 52 chr1 34969307 34969634 -247224030 - AluY SINE Alu 0 311 1 534 237 75 40 chr1 34969634 34969731 -247223933 + MIR SINE MIR 99 206 -56 1853 170 0 3 chr1 34969840 34970134 -247223530 + AluJb SINE Alu 5 297 -15 2449 74 3 0 chr1 34970356 34970652 -247223012 + AluY SINE Alu 1 297 -14 1298 141 0 0 chr1 34970825 34971002 -247222662 + AluSx SINE Alu 5 181 -131 2473 92 0 9 chr1 34971227 34971543 -247222121 + AluSq SINE Alu 1 313 0 901 277 61 83 chr1 34971618 34971993 -247221671 + L2 LINE L2 2898 3264 -8 207 261 159 0 chr1 34971995 34972064 -247221600 + L2 LINE L2 2612 2691 -623 524 316 87 21 chr1 34972077 34972390 -247221274 + L2 LINE L2 2793 3124 -189 1120 126 0 0 chr1 34972409 34972568 -247221096 - AluSx SINE Alu -153 159 1 510 245 53 40 chr1 34972601 34972752 -247220912 + L2 LINE L2 3161 3313 0 393 296 15 38 chr1 34972777 34972909 -247220755 + MARNA DNA Mariner 81 209 -377 1697 159 17 13 chr1 34972962 34973264 -247220400 + AluJo SINE Alu 1 303 -9 1824 131 0 0 chr1 34973410 34973677 -247219987 - AluSx SINE Alu -17 295 29 1903 127 34 0 chr1 34974072 34974364 -247219300 + AluSx SINE Alu 2 303 -9 603 250 0 15 chr1 34974393 34974525 -247219139 + L2 LINE L2 3184 3313 0 2067 99 0 3 chr1 34974560 34974870 -247218794 - AluSx SINE Alu 0 309 1 515 166 26 113 chr1 34975389 34975540 -247218124 - Charlie8 DNA MER1_type -2218 199 62 2053 84 29 0 chr1 34975554 34975882 -247217782 - AluSg1 SINE Alu 0 336 1 2431 37 0 7 chr1 34976032 34976329 -247217335 - AluY SINE Alu -16 295 1 415 338 61 0 chr1 34976480 34976628 -247217036 - L2 LINE L2 0 3272 3116 1785 156 0 23 chr1 34976648 34976955 -247216709 - AluJb SINE Alu -12 300 1 973 147 25 0 chr1 34977323 34977486 -247216178 + FRAM SINE Alu 1 165 -11 442 287 52 55 chr1 34977552 34977897 -247215767 - L2 LINE L2 -613 2701 2358 1898 102 29 0 chr1 34977897 34978199 -247215465 - AluSx SINE Alu 0 310 1 1217 104 0 0 chr1 34978205 34978368 -247215296 - AluSq SINE Alu -17 296 134 2042 110 0 7 chr1 34978368 34978689 -247214975 - AluSx SINE Alu 0 312 2 467 311 37 0 chr1 34979144 34979279 -247214385 - L2 LINE L2 -954 2360 2221 205 297 27 36 chr1 34979497 34979608 -247214056 + L2 LINE L2 3203 3312 -1 201 74 0 0 chr1 34979614 34979641 -247214023 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 2123 103 13 0 chr1 34979643 34979943 -247213721 - AluSg1 SINE Alu 0 309 6 407 248 18 137 chr1 34980178 34980312 -247213352 - MIR SINE MIR 0 262 114 2199 69 0 10 chr1 34980312 34980624 -247213040 - AluSg SINE Alu 0 310 1 407 248 18 137 chr1 34980624 34980666 -247212998 - MIR SINE MIR -148 114 115 2942 155 30 41 chr1 34980666 34981226 -247212438 + MLT2B3 LTR ERVL 1 554 0 407 248 18 137 chr1 34981226 34981274 -247212390 - MIR SINE MIR -146 116 64 2263 75 0 3 chr1 34981435 34981761 -247211903 + AluY SINE Alu 1 325 0 674 225 71 12 chr1 34981777 34981946 -247211718 - MIR SINE MIR -12 250 72 21 0 0 0 chr1 34981995 34982016 -247211648 + AT_rich Low_complexity Low_complexity 1 21 0 1514 148 16 12 chr1 34982036 34982292 -247211372 - AluJo SINE Alu -53 259 3 2502 43 0 3 chr1 34982305 34982608 -247211056 - AluY SINE Alu -9 302 1 765 163 0 23 chr1 34984025 34984154 -247209510 - AluJo SINE Alu -176 136 11 1492 167 33 7 chr1 34984171 34984504 -247209160 - AluJb SINE Alu 0 340 1 1066 143 4 35 chr1 34984526 34984784 -247208880 + AluJb SINE Alu 1 307 -5 278 289 0 12 chr1 34985016 34985099 -247208565 - L1MC/D LINE L1 -1930 5878 5797 329 340 30 0 chr1 34985617 34985717 -247207947 + L2 LINE L2 3162 3264 -8 2156 121 0 0 chr1 34986043 34986350 -247207314 - AluSq SINE Alu -6 307 1 23 0 0 0 chr1 34986359 34986382 -247207282 + AT_rich Low_complexity Low_complexity 1 23 0 1091 169 0 0 chr1 34986383 34986555 -247207109 - FAM SINE Alu 0 175 4 2187 217 92 57 chr1 34986559 34987223 -247206441 - L1ME3 LINE L1 -62 6100 5406 1829 164 0 0 chr1 34987223 34987516 -247206148 - AluJb SINE Alu -19 293 1 2187 217 92 57 chr1 34987516 34987589 -247206075 - L1ME3 LINE L1 -756 5406 5337 352 323 84 20 chr1 34987615 34987866 -247205798 + L2 LINE L2 2158 2424 -890 2106 104 0 0 chr1 34987949 34988238 -247205426 + AluSx SINE Alu 1 289 -23 282 56 0 0 chr1 34988238 34988274 -247205390 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 683 294 99 0 chr1 34988536 34988788 -247204876 + MLT1K LTR MaLR 77 353 -235 1977 109 3 20 chr1 34988994 34989298 -247204366 - AluSx SINE Alu -13 299 1 843 238 32 0 chr1 34989305 34989494 -247204170 + MIR SINE MIR 12 206 -56 2146 110 0 0 chr1 34990006 34990296 -247203368 + AluSx SINE Alu 1 290 -22 2269 63 10 3 chr1 34990435 34990737 -247202927 - AluY SINE Alu -7 304 1 183 305 124 56 chr1 34990829 34991062 -247202602 - L2 LINE L2 -349 2965 2717 1822 128 29 0 chr1 34991453 34991727 -247201937 + AluSx SINE Alu 16 297 -15 496 211 0 11 chr1 34993027 34993117 -247200547 - FLAM_A SINE Alu -48 94 6 2151 82 21 7 chr1 34994400 34994691 -247198973 + AluSq SINE Alu 1 295 -18 2217 105 0 0 chr1 34995852 34996157 -247197507 - AluSg SINE Alu -5 305 1 227 184 0 0 chr1 34999111 34999149 -247194515 + Alu SINE Alu 108 145 -21 23 0 0 0 chr1 34999150 34999173 -247194491 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 34999369 34999393 -247194271 + AT_rich Low_complexity Low_complexity 1 24 0 1465 154 70 15 chr1 34999402 34999675 -247193989 - AluJo SINE Alu -24 288 1 255 158 88 18 chr1 34999681 34999738 -247193926 + MIR SINE MIR 106 166 -96 2362 70 0 0 chr1 34999862 35000160 -247193504 + AluY SINE Alu 1 298 -13 310 40 0 40 chr1 35000184 35000234 -247193430 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 278 277 15 22 chr1 35000357 35000448 -247193216 + MIR SINE MIR 66 155 -61 255 291 38 13 chr1 35001048 35001127 -247192537 + MIR SINE MIR 2 82 -180 2578 170 53 63 chr1 35001239 35001361 -247192303 + L1MB3 LINE L1 4835 4957 -1227 2216 74 0 24 chr1 35001361 35001659 -247192005 + AluSx SINE Alu 1 291 -21 2578 170 53 63 chr1 35001659 35001739 -247191925 + L1MB3 LINE L1 4957 5036 -1148 1730 163 0 22 chr1 35001739 35002078 -247191586 + AluSx SINE Alu 1 312 0 2578 170 53 63 chr1 35002078 35002598 -247191066 + L1MB3 LINE L1 5036 5560 -624 2372 84 0 0 chr1 35002598 35002907 -247190757 + AluY SINE Alu 1 309 -2 2578 170 53 63 chr1 35002907 35003203 -247190461 + L1MB3 LINE L1 5560 5857 -327 1974 107 23 19 chr1 35003203 35003513 -247190151 + AluSx SINE Alu 1 311 -1 2578 170 53 63 chr1 35003513 35003872 -247189792 + L1MB3 LINE L1 5857 6183 -1 300 296 11 34 chr1 35003980 35004068 -247189596 + Charlie8 DNA MER1_type 1 86 -2331 1250 210 4 11 chr1 35004069 35004331 -247189333 - AluJo SINE Alu -52 260 1 333 311 104 0 chr1 35004394 35004529 -247189135 + L3 LINE CR1 1301 1449 -128 1699 174 52 6 chr1 35004530 35004858 -247188806 + L1MB7 LINE L1 5822 6164 -20 261 294 56 24 chr1 35004941 35005067 -247188597 - MIR SINE MIR -102 160 31 2108 124 0 0 chr1 35005098 35005396 -247188268 + AluSx SINE Alu 1 298 -14 2116 108 3 10 chr1 35006042 35006356 -247187308 + AluSx SINE Alu 1 312 0 463 266 86 0 chr1 35006395 35006534 -247187130 + MIR SINE MIR 1 151 -111 258 192 110 27 chr1 35006535 35006608 -247187056 + MLT1K LTR MaLR 3 81 -507 227 244 116 23 chr1 35006828 35006914 -247186750 + LTR67 LTR ERVL 464 557 0 2243 91 0 0 chr1 35010670 35010967 -247182697 + AluSg SINE Alu 1 297 -13 288 277 0 32 chr1 35011029 35011123 -247182541 + L2 LINE L2 2441 2531 -783 868 151 12 74 chr1 35011166 35011424 -247182240 - AluJb SINE Alu -60 252 11 1243 629 0 385 chr1 35011434 35011767 -247181897 + L2 LINE L2 2504 3412 99 1898 108 13 44 chr1 35011767 35011903 -247181761 + AluSx SINE Alu 1 140 -172 1960 111 0 4 chr1 35011903 35012210 -247181454 + AluSc SINE Alu 1 306 0 2172 105 0 6 chr1 35012215 35012529 -247181135 + AluSq SINE Alu 1 312 -1 1898 108 13 44 chr1 35012529 35012700 -247180964 + AluSx SINE Alu 144 305 -7 1243 629 0 385 chr1 35012700 35012967 -247180697 + L2 LINE L2 3411 3210 -103 288 208 104 39 chr1 35012988 35013065 -247180599 - L2 LINE L2 -4 3268 3187 235 354 57 25 chr1 35013260 35013418 -247180246 - L2 LINE L2 -706 2608 2446 853 115 0 8 chr1 35014780 35014910 -247178754 - FLAM_C SINE Alu -14 129 1 430 275 113 52 chr1 35015289 35015691 -247177973 - L2 LINE L2 -1 3312 2809 474 285 28 7 chr1 35016145 35016289 -247177375 + MIR SINE MIR 46 192 -70 408 40 0 0 chr1 35016702 35016752 -247176912 + (TG)n Simple_repeat Simple_repeat 2 51 0 2346 87 3 0 chr1 35016963 35017273 -247176391 - AluSq SINE Alu -2 311 1 228 284 14 0 chr1 35018469 35018543 -247175121 + CT-rich Low_complexity Low_complexity 1 75 0 239 311 0 19 chr1 35018604 35018707 -247174957 + (TG)n Simple_repeat Simple_repeat 2 102 0 520 269 72 106 chr1 35019040 35019064 -247174600 - L1ME4a LINE L1 -5 6116 6093 1575 184 10 7 chr1 35019064 35019358 -247174306 + AluJb SINE Alu 1 295 -17 520 269 72 106 chr1 35019358 35019504 -247174160 - L1ME4a LINE L1 -28 6093 5943 2019 117 17 0 chr1 35019504 35019802 -247173862 - AluSx SINE Alu -9 303 1 520 269 72 106 chr1 35019802 35019926 -247173738 - L1ME4a LINE L1 -178 5943 5834 1642 163 0 47 chr1 35019926 35020039 -247173625 - 7SLRNA srpRNA srpRNA -7 313 196 2477 62 0 3 chr1 35020039 35020345 -247173319 - AluY SINE Alu -6 305 1 1642 163 0 47 chr1 35020345 35020550 -247173114 - 7SLRNA srpRNA srpRNA -124 196 10 520 269 72 106 chr1 35020550 35020629 -247173035 - L1ME4a LINE L1 -287 5834 5754 1923 110 53 0 chr1 35020634 35020915 -247172749 - AluSx SINE Alu -15 297 2 1104 60 0 0 chr1 35020915 35021049 -247172615 - AluY SINE Alu -177 134 1 368 291 168 11 chr1 35021049 35021228 -247172436 - L1ME4a LINE L1 -2053 5755 5549 2298 68 0 32 chr1 35021246 35021556 -247172108 + AluY SINE Alu 2 311 0 21 36 0 0 chr1 35021642 35021670 -247171994 + AT_rich Low_complexity Low_complexity 1 28 0 793 237 0 13 chr1 35021745 35021894 -247171770 + FRAM SINE Alu 1 149 -153 190 0 0 0 chr1 35021894 35021915 -247171749 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 270 56 0 0 chr1 35022043 35022079 -247171585 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 863 175 0 0 chr1 35022150 35022287 -247171377 - AluY SINE Alu -29 282 146 2299 119 0 0 chr1 35022327 35022622 -247171042 + AluSx SINE Alu 1 295 -17 280 264 52 45 chr1 35022987 35023142 -247170522 - HAL1b LINE L1 -447 901 746 2336 116 0 3 chr1 35023306 35023617 -247170047 - AluSx SINE Alu -2 310 1 2616 68 0 0 chr1 35023624 35023935 -247169729 - AluY SINE Alu 0 311 1 255 175 70 0 chr1 35024059 35024116 -247169548 - MIR SINE MIR -96 166 106 1601 156 69 14 chr1 35024122 35024398 -247169266 + AluJo SINE Alu 1 291 -21 24 0 0 0 chr1 35024404 35024428 -247169236 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 35024624 35024647 -247169017 + AT_rich Low_complexity Low_complexity 1 23 0 1421 174 78 4 chr1 35024648 35024906 -247168758 - AluJo SINE Alu -31 281 5 443 252 74 22 chr1 35024946 35025039 -247168625 + MIR SINE MIR 117 221 -41 2199 88 35 3 chr1 35025039 35025322 -247168342 + AluSp SINE Alu 1 292 -21 443 252 74 22 chr1 35025322 35025363 -247168301 + MIR SINE MIR 221 258 -4 1186 105 189 0 chr1 35025924 35026115 -247167549 - MER30 DNA MER1_type 0 230 4 259 206 82 27 chr1 35026122 35026195 -247167469 - MIR SINE MIR -61 201 125 2346 86 0 3 chr1 35026406 35026698 -247166966 + AluSg SINE Alu 1 291 -19 619 243 166 77 chr1 35028053 35028415 -247165249 - L2 LINE L2 -4 3309 2916 1262 225 48 10 chr1 35028419 35028708 -247164956 - AluJb SINE Alu -12 300 1 198 103 0 0 chr1 35028713 35028742 -247164922 + (T)n Simple_repeat Simple_repeat 1 29 0 2548 41 3 3 chr1 35028756 35029049 -247164615 + AluY SINE Alu 1 293 -18 2287 88 7 3 chr1 35029073 35029368 -247164296 + AluSq SINE Alu 1 296 -17 1371 165 0 48 chr1 35029389 35029638 -247164026 - AluJo SINE Alu -75 237 1 1006 174 12 0 chr1 35029893 35030054 -247163610 + AluSg/x SINE Alu 133 295 -15 2228 123 0 22 chr1 35030111 35030428 -247163236 + AluSx SINE Alu 2 311 -1 1331 204 99 0 chr1 35030523 35030807 -247162857 + AluJo SINE Alu 1 312 0 190 318 121 15 chr1 35031961 35032093 -247161571 + L2 LINE L2 3168 3313 0 458 254 36 9 chr1 35032769 35032879 -247160785 + MER81 DNA DNA 1 113 -1 181 267 22 22 chr1 35033096 35033141 -247160523 + MIR SINE MIR 33 77 -185 270 0 0 0 chr1 35033163 35033193 -247160471 + (T)n Simple_repeat Simple_repeat 1 30 0 2457 77 0 0 chr1 35033256 35033554 -247160110 + AluY SINE Alu 1 298 -13 2422 77 3 0 chr1 35035575 35035873 -247157791 - AluSp SINE Alu -14 299 1 2156 135 0 0 chr1 35035873 35036168 -247157496 - AluSx SINE Alu -16 296 1 532 221 326 11 chr1 35036212 35036402 -247157262 - MIR SINE MIR 0 262 13 2372 68 0 19 chr1 35036432 35036743 -247156921 + AluY SINE Alu 1 305 -6 2034 91 42 3 chr1 35036872 35037159 -247156505 + AluSq SINE Alu 1 298 -15 683 191 7 29 chr1 35037181 35037317 -247156347 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr1 35037317 35037339 -247156325 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 35037444 35037467 -247156197 + GC_rich Low_complexity Low_complexity 1 23 0 2496 88 0 0 chr1 35037467 35037773 -247155891 - AluSg SINE Alu -4 306 1 612 230 24 8 chr1 35037785 35037911 -247155753 - MIR SINE MIR -114 148 21 231 323 47 39 chr1 35038398 35038525 -247155139 - L2 LINE L2 0 3272 3145 206 350 60 8 chr1 35038989 35039106 -247154558 + L2 LINE L2 3136 3258 -14 548 290 54 91 chr1 35039351 35039801 -247153863 + L2 LINE L2 2781 3216 -56 198 0 0 0 chr1 35039801 35039823 -247153841 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 35039846 35039868 -247153796 + GC_rich Low_complexity Low_complexity 1 22 0 2325 121 0 3 chr1 35040004 35040311 -247153353 - AluSx SINE Alu -6 306 1 1105 196 38 50 chr1 35040324 35040361 -247153303 - L1ME2 LINE L1 -10 6154 6118 1980 153 3 3 chr1 35040361 35040655 -247153009 - AluJb SINE Alu -18 294 1 1105 196 38 50 chr1 35040655 35040878 -247152786 - L1ME2 LINE L1 -46 6118 5894 2248 108 0 13 chr1 35040878 35041183 -247152481 - AluSg SINE Alu -9 301 1 2324 85 41 0 chr1 35041188 35041482 -247152182 - AluY SINE Alu -5 306 1 1105 196 38 50 chr1 35041482 35041531 -247152133 - L1ME2 LINE L1 -274 5890 5842 2317 85 0 19 chr1 35041546 35041853 -247151811 - AluSq SINE Alu -12 301 1 2352 73 0 23 chr1 35042001 35042304 -247151360 + AluY SINE Alu 1 296 -15 401 291 119 73 chr1 35042322 35042519 -247151145 - L2 LINE L2 -5 3267 3080 1931 90 76 11 chr1 35042519 35042796 -247150868 + AluSx SINE Alu 1 295 -17 1734 81 13 0 chr1 35042796 35043030 -247150634 + L1PA5 LINE L1 5918 6154 0 401 291 119 73 chr1 35043030 35043315 -247150349 - L2 LINE L2 -192 3080 2751 2233 119 0 0 chr1 35043315 35043608 -247150056 + AluSq SINE Alu 1 293 -20 401 291 119 73 chr1 35043608 35043743 -247149921 - L2 LINE L2 -521 2751 2624 315 225 111 13 chr1 35043821 35043935 -247149729 - MIR SINE MIR -62 146 16 2363 78 0 25 chr1 35044294 35044614 -247149050 + AluSx SINE Alu 1 312 0 992 175 44 0 chr1 35044619 35044779 -247148885 + AluJb SINE Alu 129 295 -17 201 229 300 0 chr1 35044862 35044932 -247148732 - L2 LINE L2 -12 3301 3211 2145 110 24 0 chr1 35045192 35045483 -247148181 - AluSg SINE Alu -12 298 1 656 121 0 0 chr1 35045498 35045589 -247148075 + AluSg/x SINE Alu 204 294 -15 289 263 12 25 chr1 35045626 35045706 -247147958 + MIR SINE MIR 78 156 -106 569 185 0 104 chr1 35045750 35045807 -247147857 + MIR SINE MIR 14 51 -211 1663 187 27 10 chr1 35045807 35046106 -247147558 + AluJo SINE Alu 1 304 -8 569 185 0 104 chr1 35046106 35046183 -247147481 + MIR SINE MIR 51 134 -128 2305 96 3 3 chr1 35046800 35047101 -247146563 - AluY SINE Alu -10 301 1 1155 95 0 0 chr1 35047101 35047249 -247146415 - AluY SINE Alu -20 291 144 2374 75 24 0 chr1 35047289 35047583 -247146081 + AluY SINE Alu 1 301 -10 2327 94 10 0 chr1 35047594 35047893 -247145771 - AluSp SINE Alu -11 302 1 950 105 0 0 chr1 35047893 35048026 -247145638 - AluSg/x SINE Alu -6 304 172 844 179 61 30 chr1 35048026 35048107 -247145557 - MER33 DNA MER1_type -88 74 1 1523 144 15 102 chr1 35048107 35048440 -247145224 - AluJb SINE Alu -8 304 1 2003 167 0 0 chr1 35048444 35048749 -247144915 - AluJb SINE Alu -7 305 1 844 179 61 30 chr1 35048749 35048898 -247144766 - MER33 DNA MER1_type -167 4294967291 1 2451 236 80 50 chr1 35049228 35049467 -247144197 + HAL1 LINE L1 744 974 -1533 2518 78 0 0 chr1 35049467 35049763 -247143901 - AluSg SINE Alu -14 296 1 2451 236 80 50 chr1 35049763 35050368 -247143296 + HAL1 LINE L1 974 1633 -874 2500 85 7 0 chr1 35050368 35050673 -247142991 + AluSg SINE Alu 1 307 -3 2451 236 80 50 chr1 35050673 35050958 -247142706 + HAL1 LINE L1 1633 1908 -599 210 37 0 0 chr1 35051220 35051247 -247142417 + (TG)n Simple_repeat Simple_repeat 2 28 0 464 186 0 0 chr1 35051248 35051318 -247142346 - AluSg/x SINE Alu -29 281 212 721 193 8 0 chr1 35051320 35051439 -247142225 + AluSc SINE Alu 131 250 -59 355 118 0 0 chr1 35051440 35051491 -247142173 - AluSp/q SINE Alu -96 207 157 2391 103 0 3 chr1 35051512 35051824 -247141840 + AluY SINE Alu 1 311 0 2002 105 6 32 chr1 35051852 35052167 -247141497 + AluSp SINE Alu 1 307 -6 1667 94 7 51 chr1 35052189 35052465 -247141199 + AluY SINE Alu 18 281 -30 2336 116 0 3 chr1 35052503 35052814 -247140850 + AluSx SINE Alu 1 310 -2 280 264 52 45 chr1 35052978 35053133 -247140531 + HAL1b LINE L1 746 901 -447 2280 104 0 16 chr1 35053725 35054032 -247139632 + AluSx SINE Alu 1 302 -10 264 283 62 41 chr1 35054141 35054286 -247139378 - MIR SINE MIR -26 236 89 472 301 6 32 chr1 35054576 35054732 -247138932 - MIR3 SINE MIR -41 167 16 25 0 0 0 chr1 35055070 35055095 -247138569 + AT_rich Low_complexity Low_complexity 1 25 0 653 283 53 11 chr1 35056024 35056211 -247137453 - MIR SINE MIR -17 245 51 2135 131 3 0 chr1 35056218 35056515 -247137149 + AluSx SINE Alu 1 298 -14 2009 94 9 94 chr1 35056515 35056844 -247136820 + AluSp SINE Alu 1 301 -12 209 285 74 116 chr1 35057050 35057292 -247136372 - L2 LINE L2 -227 3045 2814 264 301 113 74 chr1 35057517 35057773 -247135891 - L2 LINE L2 -10 3262 2997 1665 97 4 82 chr1 35057780 35057916 -247135748 + AluSx SINE Alu 1 109 -203 2454 90 0 6 chr1 35057916 35058228 -247135436 + AluSg SINE Alu 1 310 0 1665 97 4 82 chr1 35058228 35058348 -247135316 + AluSx SINE Alu 109 237 -75 224 288 168 8 chr1 35058513 35058638 -247135026 + MIR SINE MIR 72 216 -46 2409 78 0 38 chr1 35058639 35058958 -247134706 + AluSg SINE Alu 1 307 -3 2444 78 0 0 chr1 35060093 35060387 -247133277 - AluY SINE Alu -17 294 1 1818 168 3 26 chr1 35060387 35060691 -247132973 - AluJo SINE Alu -15 297 1 210 266 23 86 chr1 35060691 35060759 -247132905 - MIR SINE MIR -4 258 200 2303 120 0 0 chr1 35060759 35061067 -247132597 + AluSq SINE Alu 1 308 -5 210 266 23 86 chr1 35061067 35061126 -247132538 - MIR SINE MIR -62 200 139 2251 120 0 0 chr1 35061226 35061525 -247132139 + AluSg SINE Alu 1 299 -11 2231 114 3 16 chr1 35061525 35061831 -247131833 + AluSg SINE Alu 1 302 -8 2402 98 0 13 chr1 35062396 35062711 -247130953 + AluSx SINE Alu 2 312 0 339 304 103 46 chr1 35062825 35063019 -247130645 + MIR SINE MIR 58 262 0 356 264 211 43 chr1 35063264 35063472 -247130192 + MIR SINE MIR 14 256 -6 220 217 169 12 chr1 35063549 35063632 -247130032 + MIR SINE MIR 34 129 -133 1531 128 61 51 chr1 35064579 35064674 -247128990 + MER2 DNA MER2_type 6 99 -246 2160 99 0 19 chr1 35064674 35064986 -247128678 + AluSx SINE Alu 1 306 -6 1531 128 61 51 chr1 35064986 35065202 -247128462 + MER2 DNA MER2_type 99 320 -25 764 189 13 189 chr1 35065399 35065441 -247128223 - MIR SINE MIR -4 258 210 2586 62 3 0 chr1 35065441 35065747 -247127917 - AluSp SINE Alu -6 307 1 764 189 13 189 chr1 35065747 35066006 -247127658 - MIR SINE MIR -52 210 10 1043 105 0 0 chr1 35066606 35066739 -247126925 + AluSq/x SINE Alu 1 133 -179 243 182 23 0 chr1 35066817 35066861 -247126803 - MIR3 SINE MIR -30 178 134 1727 163 0 21 chr1 35066891 35067056 -247126608 - AluSq SINE Alu -17 296 138 2350 93 0 31 chr1 35067056 35067378 -247126286 - AluSx SINE Alu 0 312 1 1727 163 0 21 chr1 35067378 35067495 -247126169 - AluSq SINE Alu -175 138 20 2232 99 26 3 chr1 35068139 35068442 -247125222 + AluSp SINE Alu 2 311 -2 247 263 22 66 chr1 35068542 35068614 -247125050 - L1ME4a LINE L1 0 6121 6056 2206 101 7 3 chr1 35068614 35068910 -247124754 + AluSc SINE Alu 1 297 -12 247 263 22 66 chr1 35068910 35068974 -247124690 - L1ME4a LINE L1 -65 6056 5991 361 174 0 0 chr1 35069028 35069097 -247124567 - LTR30 LTR ERV1 -102 620 552 432 289 75 11 chr1 35069435 35069622 -247124042 - L1MC4a LINE L1 -312 5809 5628 2126 128 7 0 chr1 35069680 35069970 -247123694 + AluSx SINE Alu 1 292 -20 307 294 113 57 chr1 35070122 35070299 -247123365 - MIR SINE MIR -29 233 47 1345 106 0 11 chr1 35070617 35070830 -247122834 + AluSg/x SINE Alu 105 315 0 818 268 96 30 chr1 35070832 35071134 -247122530 - MLT1K LTR MaLR -150 438 117 365 264 35 49 chr1 35071279 35071423 -247122241 - L2 LINE L2 -1 3312 3171 1723 150 8 4 chr1 35071570 35071824 -247121840 + AluJo SINE Alu 37 291 -21 859 245 43 51 chr1 35071911 35072164 -247121500 - MIR SINE MIR 0 262 12 709 232 87 93 chr1 35072372 35072682 -247120982 + MER102a DNA MER1_type 9 316 -14 1779 150 0 70 chr1 35072961 35073274 -247120390 + AluJb SINE Alu 7 297 -15 2136 135 0 6 chr1 35073276 35073587 -247120077 + AluSx SINE Alu 1 309 -3 2294 92 3 0 chr1 35074336 35074647 -247119017 - AluSp SINE Alu 0 312 1 479 260 215 23 chr1 35074667 35074886 -247118778 - MIR SINE MIR 0 262 2 575 163 0 0 chr1 35075773 35075865 -247117799 + AluJ/FLAM SINE Alu 2 93 -219 180 77 0 0 chr1 35075888 35075914 -247117750 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1773 102 0 4 chr1 35075975 35076200 -247117464 + AluSx SINE Alu 1 224 -88 2118 114 0 38 chr1 35076203 35076518 -247117146 + AluSq SINE Alu 1 303 -10 2157 111 0 0 chr1 35076527 35076806 -247116858 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr1 35076806 35076836 -247116828 + (CA)n Simple_repeat Simple_repeat 1 30 0 422 241 132 61 chr1 35076851 35077063 -247116601 - MIR SINE MIR -26 236 10 225 318 64 9 chr1 35077060 35077170 -247116494 - MIR SINE MIR -61 201 86 * 1813 112 0 35 chr1 35077644 35077903 -247115761 - AluSx SINE Alu -53 259 10 207 288 0 17 chr1 35078847 35078906 -247114758 - L3 LINE CR1 -3 1574 1517 2508 54 0 3 chr1 35079133 35079431 -247114233 + AluY SINE Alu 1 297 -14 239 275 38 25 chr1 35079538 35079618 -247114046 - L3 LINE CR1 -74 1503 1423 2338 88 3 38 chr1 35079655 35079974 -247113690 - AluSc SINE Alu -1 308 1 311 0 0 25 chr1 35080080 35080120 -247113544 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 772 234 7 0 chr1 35080122 35080267 -247113397 - FRAM SINE Alu -30 146 1 331 214 194 0 chr1 35080333 35080436 -247113228 + L2 LINE L2 3191 3313 0 533 232 98 68 chr1 35080629 35080792 -247112872 + L1ME4a LINE L1 5634 5791 -330 2296 96 0 10 chr1 35080792 35081094 -247112570 + AluSg SINE Alu 1 299 -11 533 232 98 68 chr1 35081094 35081298 -247112366 + L1ME4a LINE L1 5791 6008 -113 2169 89 11 7 chr1 35081302 35081608 -247112056 + AluSp SINE Alu 1 307 0 237 169 0 0 chr1 35081702 35081749 -247111915 - L1MB7 LINE L1 0 6178 6132 1985 131 28 3 chr1 35081782 35082072 -247111592 - AluSx SINE Alu -15 297 1 2325 110 3 0 chr1 35082114 35082422 -247111242 - AluSg1 SINE Alu 0 309 1 1574 194 3 10 chr1 35082444 35082738 -247110926 + AluJb SINE Alu 7 298 -14 251 297 168 20 chr1 35082875 35082976 -247110688 - L2 LINE L2 -12 3260 3145 356 304 158 16 chr1 35083279 35083463 -247110201 - MIR SINE MIR -30 232 23 346 302 59 31 chr1 35083609 35083831 -247109833 - L2 LINE L2 -181 3091 2864 219 36 0 0 chr1 35084340 35084368 -247109296 + (GA)n Simple_repeat Simple_repeat 1 28 0 321 348 29 14 chr1 35084678 35084816 -247108848 - MIR SINE MIR -95 167 28 2318 95 0 3 chr1 35084885 35085180 -247108484 + AluSc SINE Alu 1 294 -15 1790 106 0 0 chr1 35085234 35085461 -247108203 + AluSq SINE Alu 1 227 -86 1257 161 51 22 chr1 35085461 35085734 -247107930 + L1M4 LINE L1 4169 4449 -1697 1148 180 4 44 chr1 35085738 35085881 -247107783 + AluJb SINE Alu 6 138 -174 2289 97 14 0 chr1 35085881 35086171 -247107493 + AluY SINE Alu 1 294 -17 1148 180 4 44 chr1 35086171 35086255 -247107409 + AluJb SINE Alu 138 224 -88 24 0 0 0 chr1 35136320 35136344 -247057320 + AT_rich Low_complexity Low_complexity 1 24 0 1136 214 46 41 chr1 35136344 35136713 -247056951 - L1MA7 LINE L1 0 6291 5921 2199 256 99 55 chr1 35136890 35138590 -247055074 - L1M4 LINE L1 -701 5473 3671 1034 222 59 5 chr1 35138619 35138839 -247054825 - MLT1A1 LTR MaLR 0 365 134 1150 200 8 47 chr1 35138839 35139074 -247054590 - MSTD LTR MaLR 0 396 171 1939 250 65 32 chr1 35139187 35139844 -247053820 + L1ME1 LINE L1 5488 6166 0 651 289 36 0 chr1 35139952 35140177 -247053487 + MIR SINE MIR 4 236 -26 543 210 37 2 chr1 35140282 35140417 -247053247 - L1MA9 LINE L1 -281 5875 5736 * 1620 177 47 44 chr1 35140412 35140819 -247052845 + L1MA9 LINE L1 5871 6278 -34 645 287 55 38 chr1 35140827 35141064 -247052600 + MIR SINE MIR 20 260 -2 787 248 124 0 chr1 35141095 35141337 -247052327 + Charlie2b DNA MER1_type 881 1152 -1630 330 216 23 0 chr1 35141437 35141525 -247052139 + L1M4 LINE L1 4417 4506 -1640 767 243 110 0 chr1 35141660 35141952 -247051712 + L1M4 LINE L1 4735 5058 -1088 * 26523 134 10 62 chr1 35141949 35146894 -247046770 - L1P LINE L1 -1081 5065 377 578 85 0 0 chr1 35146904 35146986 -247046678 + L1P LINE L1 5043 5124 -1022 2028 107 34 21 chr1 35147593 35147884 -247045780 + AluJo SINE Alu 1 295 -17 266 229 181 4 chr1 35147947 35148056 -247045608 - MIR SINE MIR -85 123 35 2394 98 0 9 chr1 35148071 35148250 -247045414 - AluSx SINE Alu 0 312 136 2306 102 7 0 chr1 35148250 35148553 -247045111 - AluSp SINE Alu -8 305 1 2394 98 0 9 chr1 35148553 35148688 -247044976 - AluSx SINE Alu -176 136 1 2165 114 0 17 chr1 35149986 35150283 -247043381 - AluSx SINE Alu -20 292 1 220 268 49 0 chr1 35151736 35151818 -247041846 - MIR3 SINE MIR -29 179 94 16048 143 27 68 chr1 35155256 35158621 -247035043 - L1P LINE L1 -2330 3816 591 1829 217 6 6 chr1 35158629 35158988 -247034676 - MLT2D LTR ERVL -55 359 1 2456 87 0 0 chr1 35159238 35159537 -247034127 - AluSg SINE Alu -11 299 1 295 238 89 10 chr1 35159724 35159825 -247033839 - MIR SINE MIR -62 146 38 1298 151 86 62 chr1 35159918 35160209 -247033455 - AluSx SINE Alu -14 298 1 2514 49 3 0 chr1 35160214 35160499 -247033165 - AluSx SINE Alu -26 286 1 431 297 66 19 chr1 35160736 35160948 -247032716 - HAL1b LINE L1 -561 787 566 226 302 81 0 chr1 35161169 35161255 -247032409 + MLT1I LTR MaLR 42 134 -275 6521 208 41 16 chr1 35161493 35162319 -247031345 + L1 LINE L1 3495 4299 -1847 2400 89 0 0 chr1 35162319 35162610 -247031054 - AluSc SINE Alu -18 291 1 6521 208 41 16 chr1 35162610 35162680 -247030984 + L1 LINE L1 4299 4366 -1780 246 81 0 0 chr1 35162680 35162717 -247030947 + (CA)n Simple_repeat Simple_repeat 1 37 0 6521 208 41 16 chr1 35162717 35163423 -247030241 + L1 LINE L1 4366 5138 -1008 338 324 22 15 chr1 35163876 35164012 -247029652 - MIR SINE MIR -120 142 6 1130 198 89 77 chr1 35164460 35164900 -247028764 - LTR56 LTR ERV1 0 445 1 215 323 31 0 chr1 35164997 35165062 -247028602 - MIR SINE MIR -111 97 31 451 221 130 8 chr1 35165392 35165523 -247028141 - MER69 DNA AcHobo 0 2526 2380 296 261 0 29 chr1 35165650 35165719 -247027945 - MER69 DNA AcHobo -1159 67 1 272 326 17 45 chr1 35166009 35166187 -247027477 + L2 LINE L2 2588 2760 -554 698 129 0 0 chr1 35166288 35166389 -247027275 - LTR12 LTR ERV1 -133 581 481 400 227 17 0 chr1 35166390 35166509 -247027155 - LTR30 LTR ERV1 -79 677 544 283 143 0 86 chr1 35167026 35167070 -247026594 - MLT2C2 LTR ERVL 0 464 427 336 24 0 0 chr1 35167070 35167111 -247026553 + (TG)n Simple_repeat Simple_repeat 1 41 0 283 143 0 86 chr1 35167111 35167136 -247026528 - MLT2C2 LTR ERVL -37 427 401 6896 65 5 2 chr1 35167145 35168523 -247025141 - L1PA7 LINE L1 -4 6150 4773 616 214 36 91 chr1 35168526 35168857 -247024807 + L1M4 LINE L1 4140 4452 -1694 407 106 234 0 chr1 35168962 35169056 -247024608 - MSTA LTR MaLR -199 229 114 250 214 0 0 chr1 35169102 35169158 -247024506 - L1ME LINE L1 -684 5437 5382 682 110 31 1 chr1 35169168 35169278 -247024386 - MSTA LTR MaLR -313 113 1 9536 173 19 5 chr1 35169284 35170907 -247022757 - MSTA-int LTR MaLR -6 1645 1 2336 144 65 5 chr1 35170909 35171311 -247022353 - MSTA LTR MaLR -2 426 1 265 298 106 0 chr1 35171933 35172084 -247021580 + MIR3 SINE MIR 22 188 -20 2601 174 43 6 chr1 35173294 35173760 -247019904 - MER52A LTR ERV1 0 1755 1273 10110 38 2 1 chr1 35173869 35175873 -247017791 + L1PA4 LINE L1 4149 6154 -1 361 221 183 10 chr1 35175912 35176016 -247017648 + MSTA LTR MaLR 1 122 -306 1603 116 46 0 chr1 35176116 35176357 -247017307 + AluSx SINE Alu 59 310 -2 205 224 102 31 chr1 35176978 35177076 -247016588 - MIR SINE MIR -69 193 89 662 254 37 26 chr1 35177411 35177600 -247016064 + MLT1L LTR MaLR 103 293 -322 253 208 0 0 chr1 35177704 35177757 -247015907 - MIR SINE MIR 0 262 210 5087 165 188 123 chr1 35177760 35177929 -247015735 - Tigger1 DNA MER2_type -1 2417 2260 207 0 0 0 chr1 35177929 35177952 -247015712 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5087 165 188 123 chr1 35177952 35177969 -247015695 - Tigger1 DNA MER2_type -158 2260 2246 2094 97 0 15 chr1 35177969 35178238 -247015426 - AluSg SINE Alu -45 265 1 5087 165 188 123 chr1 35178238 35178553 -247015111 - Tigger1 DNA MER2_type -172 2246 1953 1835 156 10 10 chr1 35178553 35178841 -247014823 + AluJo SINE Alu 2 289 -23 5087 165 188 123 chr1 35178841 35178867 -247014797 - Tigger1 DNA MER2_type -465 1953 1930 246 62 0 0 chr1 35178867 35178899 -247014765 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1762 148 53 7 chr1 35178899 35179182 -247014482 - AluJb SINE Alu -16 296 1 5087 165 188 123 chr1 35179182 35179602 -247014062 - Tigger1 DNA MER2_type -488 1930 1538 2165 113 3 3 chr1 35179602 35179895 -247013769 + AluSq SINE Alu 1 293 -20 198 0 0 0 chr1 35179895 35179917 -247013747 + (TA)n Simple_repeat Simple_repeat 2 23 0 5087 165 188 123 chr1 35179917 35180296 -247013368 - Tigger1 DNA MER2_type -880 1538 1185 2035 132 3 0 chr1 35180296 35180583 -247013081 - AluSx SINE Alu -24 288 1 2359 69 0 14 chr1 35180587 35180878 -247012786 - AluY SINE Alu -20 291 5 1424 209 21 3 chr1 35180881 35181168 -247012496 - AluJo SINE Alu -20 292 1 5087 165 188 123 chr1 35181168 35181198 -247012466 - Tigger1 DNA MER2_type -1236 1182 1155 2196 111 7 0 chr1 35181198 35181487 -247012177 - AluSx SINE Alu -21 291 1 5087 165 188 123 chr1 35181487 35181617 -247012047 - Tigger1 DNA MER2_type -1263 1155 1035 862 71 143 0 chr1 35181617 35181743 -247011921 - AluY SINE Alu 0 311 168 5087 165 188 123 chr1 35181743 35181820 -247011844 - Tigger1 DNA MER2_type -1383 1035 964 2058 119 42 0 chr1 35181820 35182106 -247011558 + AluSp SINE Alu 1 298 -15 5087 165 188 123 chr1 35182106 35182608 -247011056 - Tigger1 DNA MER2_type -1454 964 66 2444 81 0 3 chr1 35182608 35182915 -247010749 - AluSg SINE Alu -4 306 1 21 0 0 0 chr1 35182922 35182943 -247010721 + AT_rich Low_complexity Low_complexity 1 21 0 770 178 0 0 chr1 35182951 35183080 -247010584 + FLAM_C SINE Alu 1 129 -4 245 282 24 12 chr1 35183165 35183250 -247010414 - MIR SINE MIR -115 147 62 2327 91 3 10 chr1 35183360 35183667 -247009997 - AluSp SINE Alu -8 305 1 325 185 0 0 chr1 35183781 35183846 -247009818 - Alu SINE Alu -1 301 237 511 234 105 12 chr1 35183890 35183956 -247009708 + MIR SINE MIR 74 132 -130 1739 181 13 10 chr1 35183956 35184260 -247009404 + AluJo SINE Alu 1 305 -7 511 234 105 12 chr1 35184260 35184364 -247009300 + MIR SINE MIR 132 260 -2 234 87 0 0 chr1 35184429 35184475 -247009189 + LTR66 LTR ERVL 394 439 -171 2316 97 3 0 chr1 35184476 35184774 -247008890 - AluSx SINE Alu -13 299 1 496 216 8 64 chr1 35184895 35185020 -247008644 - L2 LINE L2 -9 3304 3187 462 239 124 104 chr1 35185028 35185187 -247008477 - Charlie8 DNA MER1_type -53 288 121 2254 99 24 0 chr1 35185187 35185479 -247008185 - AluSg SINE Alu -11 299 1 462 239 124 104 chr1 35185479 35185578 -247008086 - Charlie8 DNA MER1_type -220 121 25 36 44 0 15 chr1 35185654 35185691 -247007973 + AT_rich Low_complexity Low_complexity 1 38 -29 2179 113 0 10 chr1 35185691 35185991 -247007673 - AluSx SINE Alu -15 297 1 36 44 0 15 chr1 35185991 35186021 -247007643 + AT_rich Low_complexity Low_complexity 38 67 0 1992 93 0 15 chr1 35186021 35186290 -247007374 - AluSx SINE Alu -23 289 25 1984 129 23 26 chr1 35186312 35186615 -247007049 - AluSx SINE Alu -10 302 1 361 297 116 51 chr1 35186823 35187134 -247006530 - L2 LINE L2 -954 2360 2071 2220 110 0 0 chr1 35187134 35187426 -247006238 + AluSx SINE Alu 1 292 -20 2385 92 0 13 chr1 35187435 35187751 -247005913 + AluSq SINE Alu 1 312 -1 361 297 116 51 chr1 35187751 35187946 -247005718 - L2 LINE L2 -1250 2064 1803 732 159 0 38 chr1 35187946 35188078 -247005586 + FLAM_C SINE Alu 1 127 -6 361 297 116 51 chr1 35188078 35188112 -247005552 - L2 LINE L2 -1511 1803 1773 2349 102 0 3 chr1 35188117 35188420 -247005244 + AluSp SINE Alu 1 302 -11 401 310 8 70 chr1 35188424 35188666 -247004998 - L2 LINE L2 -662 2652 2426 756 183 86 20 chr1 35188704 35188901 -247004763 - MER106B DNA MER1_type -2 1057 848 2003 157 3 0 chr1 35188902 35189202 -247004462 + AluJb SINE Alu 1 301 -11 2411 82 0 0 chr1 35189208 35189499 -247004165 + AluSc SINE Alu 12 302 -7 1522 174 19 0 chr1 35189570 35189829 -247003835 + AluJb SINE Alu 33 296 -16 855 123 0 0 chr1 35189837 35189951 -247003713 + AluJo/FLAM SINE Alu 1 114 -198 2051 127 3 3 chr1 35189951 35190250 -247003414 - AluSx SINE Alu -13 299 1 2071 127 3 3 chr1 35190289 35190588 -247003076 - AluSx SINE Alu -13 299 1 826 125 153 23 chr1 35190590 35190806 -247002858 - MER106B DNA MER1_type -262 797 554 1699 172 150 14 chr1 35190811 35191165 -247002499 - MER106B DNA MER1_type -657 402 1 897 191 39 121 chr1 35191165 35191469 -247002195 - MER46C DNA MER2_type -13 325 52 793 169 0 22 chr1 35191469 35191629 -247002035 - FLAM_C SINE Alu 0 133 1 897 191 39 121 chr1 35191629 35191676 -247001988 - MER46C DNA MER2_type -286 52 3 2242 107 3 3 chr1 35191827 35192125 -247001539 - AluSq SINE Alu -12 301 4 216 322 161 8 chr1 35192584 35192702 -247000962 - MIR SINE MIR -57 151 16 186 43 0 0 chr1 35193412 35193435 -247000229 + (CA)n Simple_repeat Simple_repeat 2 24 0 511 130 20 0 chr1 35193800 35193900 -246999764 + (TA)n Simple_repeat Simple_repeat 2 103 0 251 125 42 0 chr1 35194552 35194600 -246999064 + CT-rich Low_complexity Low_complexity 3 52 0 1447 139 24 32 chr1 35194600 35194851 -246998813 - AluJb SINE Alu -5 307 59 1412 127 0 42 chr1 35194984 35195220 -246998444 - AluJo SINE Alu 0 312 87 213 179 239 0 chr1 35195427 35195494 -246998170 + MIR SINE MIR 65 147 -115 216 0 0 0 chr1 35195666 35195690 -246997974 + (T)n Simple_repeat Simple_repeat 1 24 0 1898 128 84 0 chr1 35195947 35196221 -246997443 + AluSx SINE Alu 1 297 -15 789 191 11 49 chr1 35196306 35196455 -246997209 + L1M4 LINE L1 4907 5046 -1100 2255 102 3 0 chr1 35196455 35196749 -246996915 + AluSq SINE Alu 1 295 -18 789 191 11 49 chr1 35196749 35196810 -246996854 + L1M4 LINE L1 5046 5108 -1038 929 118 0 0 chr1 35196810 35196929 -246996735 + FLAM_C SINE Alu 1 119 -24 27 49 0 0 chr1 35196929 35196970 -246996694 + AT_rich Low_complexity Low_complexity 1 41 0 371 217 9 0 chr1 35196994 35197100 -246996564 + (TA)n Simple_repeat Simple_repeat 1 107 0 195 129 0 0 chr1 35197128 35197159 -246996505 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 414 234 0 3 chr1 35197160 35197249 -246996415 + AluJ/FLAM SINE Alu 1 68 -234 332 179 119 0 chr1 35197283 35197350 -246996314 - tRNA-Asp-GAC tRNA tRNA 0 75 1 2178 117 0 0 chr1 35197377 35197714 -246995950 - AluSx SINE Alu 0 337 1 1623 154 46 0 chr1 35197740 35198020 -246995644 - AluJb SINE Alu 0 302 11 2501 52 0 0 chr1 35198065 35198356 -246995308 + AluY SINE Alu 1 291 -20 680 170 0 0 chr1 35198365 35198477 -246995187 - FLAM_C SINE Alu -30 113 2 2110 143 0 0 chr1 35198505 35198799 -246994865 + AluJb SINE Alu 1 294 -18 717 139 10 178 chr1 35198802 35198842 -246994822 + L1M4c LINE L1 1551 1596 -4788 1441 199 26 36 chr1 35198842 35199149 -246994515 + AluJo SINE Alu 1 304 -8 717 139 10 178 chr1 35199149 35199206 -246994458 + L1M4c LINE L1 1596 1661 -4723 1478 106 5 0 chr1 35199206 35199404 -246994260 + AluSq SINE Alu 5 203 -110 2032 96 16 61 chr1 35199404 35199716 -246993948 + AluSx SINE Alu 1 298 -14 717 139 10 178 chr1 35199716 35199811 -246993853 + L1M4c LINE L1 1660 1711 -4673 1874 154 14 0 chr1 35199811 35200097 -246993567 + AluJb SINE Alu 9 298 -14 717 139 10 178 chr1 35200097 35200109 -246993555 + L1M4c LINE L1 1711 1723 -4661 * 1119 173 36 9 chr1 35200099 35200324 -246993340 + L1MB7 LINE L1 5809 6039 -145 2037 146 0 37 chr1 35200338 35200529 -246993135 - AluSx SINE Alu -1 311 135 2137 107 4 0 chr1 35200529 35200810 -246992854 - AluSp SINE Alu -31 282 1 2037 146 0 37 chr1 35200810 35200941 -246992723 - AluSx SINE Alu -177 135 1 289 143 0 0 chr1 35200942 35200991 -246992673 - FLAM_A SINE Alu 0 133 85 1103 241 0 0 chr1 35200991 35201211 -246992453 - AluJo SINE Alu -92 220 1 626 180 40 40 chr1 35201218 35201368 -246992296 + L1MB8 LINE L1 6024 6173 -5 236 264 90 112 chr1 35201486 35201618 -246992046 + Charlie8 DNA MER1_type 1 130 -211 2067 112 21 11 chr1 35201618 35201904 -246991760 - AluSq SINE Alu -11 302 14 236 264 90 112 chr1 35201904 35201949 -246991715 + Charlie8 DNA MER1_type 130 174 -167 223 328 114 30 chr1 35201975 35202176 -246991488 + L3 LINE CR1 1351 1568 -9 1738 173 17 3 chr1 35202621 35202916 -246990748 - AluJb SINE Alu -13 299 1 2272 108 3 0 chr1 35203296 35203593 -246990071 + AluSq SINE Alu 1 298 -15 2532 62 7 0 chr1 35203706 35204010 -246989654 + AluSp SINE Alu 1 306 -7 344 319 92 26 chr1 35204063 35204292 -246989372 - L2 LINE L2 -1158 2156 1913 205 253 4 0 chr1 35204759 35204842 -246988822 - L2 LINE L2 -309 3004 2921 487 217 123 66 chr1 35204950 35205406 -246988258 + L1MC5 LINE L1 7311 7940 -21 253 230 112 81 chr1 35205392 35205558 -246988106 + L1MC4 LINE L1 7533 7692 -350 * 2302 90 0 3 chr1 35205558 35205848 -246987816 + AluSg SINE Alu 13 301 -9 253 230 112 81 chr1 35205848 35206027 -246987637 + L1MC4 LINE L1 7692 7998 -44 2410 106 3 0 chr1 35206829 35207140 -246986524 - AluSx SINE Alu 0 312 1 488 233 15 41 chr1 35207175 35207312 -246986352 - LOR1-int LTR ERV1 -2429 4169 3835 1778 160 91 36 chr1 35207312 35207430 -246986234 - MLT1B LTR MaLR 0 390 280 2105 102 41 3 chr1 35207430 35207725 -246985939 + AluSg SINE Alu 1 306 -4 1778 160 91 36 chr1 35207725 35207969 -246985695 - MLT1B LTR MaLR -110 280 8 1559 141 0 12 chr1 35208554 35208796 -246984868 - AluJb SINE Alu -60 252 14 1481 126 56 0 chr1 35208830 35209045 -246984619 + AluSg/x SINE Alu 85 311 -1 1669 164 122 3 chr1 35209045 35209398 -246984266 - L1MB4 LINE L1 -4 6412 6018 2688 165 101 4 chr1 35209399 35209895 -246983769 - MER44D DNA MER2_type 0 605 7 819 212 104 0 chr1 35209901 35210094 -246983570 - L1MB4 LINE L1 -534 5876 5664 1925 149 17 0 chr1 35210100 35210389 -246983275 - AluSx SINE Alu -18 294 1 2378 85 0 23 chr1 35210395 35210702 -246982962 - AluY SINE Alu -11 300 1 2162 130 3 0 chr1 35210768 35211068 -246982596 - AluSx SINE Alu -11 301 1 854 231 0 20 chr1 35211123 35211318 -246982346 - L1MB4 LINE L1 -1251 5131 4941 * 1406 231 74 45 chr1 35211317 35211868 -246981796 - L1MB4 LINE L1 -3264 3118 2552 2586 142 164 92 chr1 35211868 35212298 -246981366 - L1MB4 LINE L1 -4143 2241 1844 1782 132 36 11 chr1 35212298 35212578 -246981086 - AluJb SINE Alu -5 307 21 2586 142 164 92 chr1 35212578 35212730 -246980934 - L1MB4 LINE L1 -4540 1844 1704 1509 192 7 21 chr1 35212730 35213041 -246980623 - AluJo SINE Alu 0 307 1 2586 142 164 92 chr1 35213041 35213091 -246980573 - L1MB4 LINE L1 -4680 1704 1659 1996 154 0 19 chr1 35213091 35213409 -246980255 - AluJb SINE Alu 0 312 1 2586 142 164 92 chr1 35213409 35213548 -246980116 - L1MB4 LINE L1 -4725 1659 1411 1117 166 17 0 chr1 35213549 35213730 -246979934 - AluSg/x SINE Alu -13 297 114 748 117 0 33 chr1 35213730 35213850 -246979814 - AluSx SINE Alu -159 153 38 1849 211 28 61 chr1 35213857 35214001 -246979663 - L1MB4 LINE L1 -4986 1398 1251 2336 74 30 7 chr1 35214001 35214300 -246979364 - AluSg SINE Alu -4 306 1 725 133 16 31 chr1 35214307 35214435 -246979229 - FLAM_C SINE Alu -7 126 1 1849 211 28 61 chr1 35214435 35214827 -246978837 - L1MB4 LINE L1 -5139 1245 872 682 193 0 43 chr1 35214829 35214969 -246978695 - AluJo SINE Alu -178 134 1 865 255 104 73 chr1 35215038 35215562 -246978102 - L1MEc LINE L1 -4538 1858 1309 2298 112 0 6 chr1 35215562 35215876 -246977788 - AluSx SINE Alu 0 312 1 865 255 104 73 chr1 35215876 35215998 -246977666 - L1MEc LINE L1 -5087 1309 1192 271 198 62 73 chr1 35215971 35216067 -246977597 - L1MEc LINE L1 -5486 910 816 * 2294 96 0 3 chr1 35216068 35216369 -246977295 - AluSc SINE Alu -9 300 1 906 168 0 42 chr1 35216370 35216537 -246977127 - FRAM SINE Alu -17 159 1 631 288 114 38 chr1 35216545 35217183 -246976481 - L1MEc LINE L1 -5579 817 131 254 237 171 83 chr1 35217232 35217495 -246976169 + L1M4 LINE L1 2319 2624 -3522 1649 177 17 10 chr1 35217495 35217795 -246975869 + AluJo SINE Alu 5 306 -6 254 237 171 83 chr1 35217795 35217894 -246975770 + L1M4 LINE L1 2624 2713 -3433 2526 74 0 0 chr1 35218007 35218316 -246975348 + AluY SINE Alu 1 309 -2 1217 84 36 6 chr1 35218316 35218482 -246975182 + AluSg/x SINE Alu 134 304 -8 2428 92 0 16 chr1 35218727 35219043 -246974621 + AluSq SINE Alu 1 311 -2 279 256 64 10 chr1 35219049 35219191 -246974473 + L1ME LINE L1 5328 5474 -690 2287 112 0 0 chr1 35219308 35219602 -246974062 + AluSx SINE Alu 1 294 -18 250 167 0 0 chr1 35219602 35219638 -246974026 + Charlie1 DNA MER1_type 1 36 -2725 526 270 7 27 chr1 35219667 35219815 -246973849 - MIR SINE MIR -114 148 4 2413 91 3 10 chr1 35220273 35220582 -246973082 + AluSq SINE Alu 5 311 -2 2244 109 0 34 chr1 35220754 35221074 -246972590 - AluSg SINE Alu -1 309 1 1695 122 3 99 chr1 35221147 35221500 -246972164 - AluJb SINE Alu 0 323 1 561 184 0 0 chr1 35221540 35221638 -246972026 - AluSg/x SINE Alu -6 304 207 2318 171 75 12 chr1 35221670 35222166 -246971498 - Tigger7 DNA MER2_type 0 2487 1 462 305 71 13 chr1 35222914 35223338 -246970326 + L2 LINE L2 2800 3312 -1 2085 98 17 3 chr1 35223837 35224134 -246969530 - L1MA1 LINE L1 0 6302 6002 244 196 0 0 chr1 35224354 35224400 -246969264 + MIR SINE MIR 76 121 -141 362 265 43 43 chr1 35224450 35224612 -246969052 - MIR3 SINE MIR -25 183 22 449 202 45 0 chr1 35225011 35225100 -246968564 + MER21B LTR ERV1 1 93 -770 625 236 135 0 chr1 35225100 35225278 -246968386 + MER21B LTR ERV1 591 792 -71 2430 82 0 10 chr1 35225461 35225764 -246967900 + AluSg SINE Alu 2 301 -9 1835 129 42 21 chr1 35226318 35226605 -246967059 + AluJb SINE Alu 1 293 -19 2429 95 0 0 chr1 35227998 35228294 -246965370 + AluSg SINE Alu 1 296 -14 * 2564 35 0 0 chr1 35228292 35228574 -246965090 + AluY SINE Alu 27 308 -3 4398 155 63 32 chr1 35229363 35230341 -246963323 - L1MB3 LINE L1 -15 6168 5153 1725 162 0 46 chr1 35230347 35230649 -246963015 - AluJb SINE Alu -22 290 3 708 160 30 15 chr1 35230661 35230792 -246962872 - FLAM_A SINE Alu 0 133 1 1789 150 3 46 chr1 35230850 35231156 -246962508 + AluJb SINE Alu 1 293 -19 2317 113 0 0 chr1 35231159 35231470 -246962194 + AluSx SINE Alu 1 311 -1 2501 80 0 0 chr1 35231788 35232087 -246961577 + AluSg SINE Alu 1 299 -11 2208 76 7 31 chr1 35232091 35232406 -246961258 + AluY SINE Alu 1 308 0 1274 161 66 0 chr1 35233114 35233325 -246960339 + AluJb SINE Alu 86 310 -2 1582 201 10 17 chr1 35233332 35233621 -246960043 + AluJo SINE Alu 6 292 -20 1650 107 5 5 chr1 35233707 35233923 -246959741 - AluSx SINE Alu -86 226 11 2028 116 21 14 chr1 35234536 35234821 -246958843 + AluJo SINE Alu 9 295 -17 2457 77 0 43 chr1 35234878 35235203 -246958461 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 35235212 35235234 -246958430 + AT_rich Low_complexity Low_complexity 1 22 0 215 246 46 15 chr1 35235874 35235939 -246957725 - MIR SINE MIR -90 118 52 189 121 0 0 chr1 35236666 35236699 -246956965 + (T)n Simple_repeat Simple_repeat 1 33 0 195 42 0 0 chr1 35237418 35237442 -246956222 + (TTC)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr1 35238617 35238638 -246955026 + (A)n Simple_repeat Simple_repeat 1 21 0 2475 73 3 3 chr1 35240946 35241248 -246952416 + AluSg SINE Alu 1 302 -8 1877 127 34 31 chr1 35241259 35241550 -246952114 + AluSx SINE Alu 1 292 -20 504 253 80 38 chr1 35242146 35242383 -246951281 - L1ME1 LINE L1 -5 6161 5915 2369 88 10 7 chr1 35242428 35242724 -246950940 - AluSq SINE Alu -16 297 1 285 292 94 0 chr1 35242785 35242881 -246950783 + Charlie8 DNA MER1_type 1 105 -2312 1664 186 14 3 chr1 35242943 35243233 -246950431 + AluJo SINE Alu 1 293 -19 593 158 175 0 chr1 35243671 35243785 -246949879 - MER46A DNA MER2_type -1 235 102 594 244 120 19 chr1 35244437 35244646 -246949018 + MIR SINE MIR 33 262 0 361 295 49 8 chr1 35244651 35244773 -246948891 - MIR SINE MIR -62 146 20 371 299 52 15 chr1 35247265 35247399 -246946265 + MIR3 SINE MIR 20 158 -50 414 275 106 73 chr1 35247483 35247701 -246945963 - Charlie8 DNA MER1_type -2190 227 3 2369 93 3 3 chr1 35247822 35248123 -246945541 + AluSq SINE Alu 1 301 -12 2203 129 0 3 chr1 35248229 35248531 -246945133 + AluSg SINE Alu 1 301 -9 2274 81 0 3 chr1 35248584 35248867 -246944797 - AluY SINE Alu -29 282 1 2485 62 3 13 chr1 35248867 35249173 -246944491 - AluY SINE Alu -8 303 1 2275 85 13 19 chr1 35249173 35249480 -246944184 - AluSc SINE Alu -4 305 1 213 368 21 0 chr1 35249732 35249827 -246943837 - L2 LINE L2 -2 3270 3174 252 243 155 34 chr1 35250496 35250644 -246943020 - L1MC5 LINE L1 -520 7441 7276 309 82 0 0 chr1 35250800 35250849 -246942815 + (TATG)n Simple_repeat Simple_repeat 2 50 0 2288 65 0 27 chr1 35250849 35251143 -246942521 - AluY SINE Alu -25 286 1 2259 108 0 3 chr1 35251145 35251441 -246942223 - AluSc SINE Alu -14 295 1 252 215 46 0 chr1 35251506 35251571 -246942093 + MIR SINE MIR 124 191 -71 626 282 342 6 chr1 35251599 35252240 -246941424 - L2 LINE L2 -1655 1659 804 1130 184 92 3 chr1 35252242 35252371 -246941293 + MER33 DNA MER1_type 1 117 -2468 1698 98 84 29 chr1 35252371 35252645 -246941019 - AluSx SINE Alu -23 289 1 1130 184 92 3 chr1 35252645 35252808 -246940856 + MER33 DNA MER1_type 117 319 -5 500 313 48 15 chr1 35252812 35253084 -246940580 - L2 LINE L2 -2510 804 524 305 111 123 0 chr1 35253714 35253795 -246939869 - Charlie5 DNA MER1_type -106 2506 2416 2057 149 3 0 chr1 35253800 35254096 -246939568 + AluSx SINE Alu 1 297 -15 329 202 219 44 chr1 35254404 35254518 -246939146 - L1ME4a LINE L1 -148 5973 5840 527 306 72 29 chr1 35254536 35254843 -246938821 - L1ME4a LINE L1 -2014 5794 5475 2248 101 7 23 chr1 35254974 35255281 -246938383 - AluSg SINE Alu -5 305 4 654 266 192 11 chr1 35255892 35256178 -246937486 - MER46C DNA MER2_type 0 338 1 2444 96 0 3 chr1 35256254 35256557 -246937107 + AluSx SINE Alu 1 302 -10 2127 103 3 73 chr1 35258940 35259300 -246934364 - AluSx SINE Alu 0 312 1 194 324 29 0 chr1 35259686 35259754 -246933910 - MIR SINE MIR -173 89 20 210 318 106 8 chr1 35260001 35260133 -246933531 - MIR SINE MIR -48 214 70 348 111 0 0 chr1 35261399 35261453 -246932211 + (T)n Simple_repeat Simple_repeat 1 54 0 260 198 128 23 chr1 35265598 35265684 -246927980 + MIR SINE MIR 132 226 -36 202 146 24 0 chr1 35265769 35265810 -246927854 + CT-rich Low_complexity Low_complexity 1 42 0 2100 137 10 0 chr1 35268296 35268589 -246925075 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr1 35268589 35268612 -246925052 + AT_rich Low_complexity Low_complexity 1 23 0 2074 126 3 3 chr1 35268618 35268919 -246924745 + AluSx SINE Alu 1 301 -11 247 343 30 0 chr1 35268994 35269093 -246924571 - MIR SINE MIR -84 124 23 247 268 49 0 chr1 35272225 35272307 -246921357 + MIR3 SINE MIR 94 179 -29 2196 114 0 17 chr1 35273760 35274057 -246919607 + AluSx SINE Alu 1 292 -20 2425 98 0 9 chr1 35275354 35275489 -246918175 + AluSx SINE Alu 1 136 -176 2339 102 7 0 chr1 35275489 35275792 -246917872 + AluSp SINE Alu 1 305 -8 2425 98 0 9 chr1 35275792 35275971 -246917693 + AluSx SINE Alu 136 312 0 272 221 214 2 chr1 35275986 35276095 -246917569 + MIR SINE MIR 35 167 -85 2062 107 34 21 chr1 35276158 35276449 -246917215 - AluJo SINE Alu -17 295 1 2333 89 0 23 chr1 35278336 35278639 -246915025 - AluSg SINE Alu -14 296 1 636 127 9 27 chr1 35278642 35278752 -246914912 - AluJo/FLAM SINE Alu -181 131 24 2282 81 13 45 chr1 35278780 35278947 -246914717 - AluSp SINE Alu -13 300 146 2628 56 0 7 chr1 35278947 35279253 -246914411 - AluY SINE Alu -7 304 1 2282 81 13 45 chr1 35279253 35279395 -246914269 - AluSp SINE Alu -167 146 1 294 261 28 103 chr1 35279396 35279475 -246914189 - MIR SINE MIR -62 146 111 2278 111 0 10 chr1 35279475 35279781 -246913883 + AluSx SINE Alu 5 307 -5 294 261 28 103 chr1 35279781 35279855 -246913809 - MIR SINE MIR -97 111 33 192 169 153 0 chr1 35282154 35282213 -246911451 - MIR SINE MIR -93 169 102 302 283 262 5 chr1 35283146 35283337 -246910327 - MIR SINE MIR -4 258 19 2463 76 0 10 chr1 35283584 35283886 -246909778 + AluSq SINE Alu 1 299 -14 361 66 82 0 chr1 35283900 35283961 -246909703 + L1MB1 LINE L1 6111 6176 -13 2270 102 0 10 chr1 35283964 35284099 -246909565 + AluSp SINE Alu 1 136 -177 2401 108 0 0 chr1 35284099 35284406 -246909258 + AluSx SINE Alu 1 307 -5 2270 102 0 10 chr1 35284406 35284573 -246909091 + AluSp SINE Alu 136 300 -13 1640 172 69 0 chr1 35284825 35285116 -246908548 - AluJb SINE Alu -1 311 1 288 300 138 19 chr1 35285259 35285419 -246908245 + MIR SINE MIR 84 262 0 2273 118 0 7 chr1 35285614 35285920 -246907744 - AluSx SINE Alu -8 304 1 362 256 231 19 chr1 35286137 35286297 -246907367 - MIR SINE MIR -16 246 53 217 333 74 7 chr1 35286834 35286969 -246906695 + L2 LINE L2 2972 3115 -157 690 286 75 4 chr1 35287040 35287267 -246906397 - MIR SINE MIR 0 262 20 1468 128 86 4 chr1 35288258 35288492 -246905172 + AluJo SINE Alu 1 253 -59 2444 83 0 3 chr1 35288726 35289028 -246904636 - AluSx SINE Alu -11 301 1 459 271 33 8 chr1 35289032 35289154 -246904510 - MIR SINE MIR -65 143 19 2234 106 6 34 chr1 35290104 35290282 -246903382 - AluSx SINE Alu 0 312 145 2349 102 0 7 chr1 35290282 35290577 -246903087 - AluSx SINE Alu -19 293 1 2234 106 6 34 chr1 35290577 35290719 -246902945 - AluSx SINE Alu -167 145 1 234 283 91 10 chr1 35290728 35290827 -246902837 - L2 LINE L2 -32 3240 3134 2035 107 50 0 chr1 35290904 35291184 -246902480 + AluSq SINE Alu 1 294 -19 2552 50 10 7 chr1 35291184 35291487 -246902177 + AluY SINE Alu 1 304 -7 1857 105 0 12 chr1 35292011 35292259 -246901405 - AluSx SINE Alu -13 299 55 1987 97 0 26 chr1 35292269 35292537 -246901127 - AluSx SINE Alu -5 307 47 1067 133 19 0 chr1 35292585 35292743 -246900921 + FRAM SINE Alu 11 171 -5 345 270 40 66 chr1 35292776 35292928 -246900736 + MIR SINE MIR 51 198 -64 1821 168 10 7 chr1 35292937 35293228 -246900436 + AluJo SINE Alu 1 292 -20 285 332 189 29 chr1 35293275 35293555 -246900109 - L2 LINE L2 -31 3241 2917 2193 72 55 14 chr1 35294700 35294991 -246898673 - AluY SINE Alu -8 303 1 2308 116 0 0 chr1 35294991 35295294 -246898370 - AluSx SINE Alu -9 303 1 417 248 38 45 chr1 35295302 35295459 -246898205 + MIR SINE MIR 107 262 0 872 120 0 0 chr1 35295513 35295630 -246898034 - FLAM_C SINE Alu -26 117 1 1013 164 38 6 chr1 35295674 35295857 -246897807 - AluJb SINE Alu -2 310 122 761 194 6 0 chr1 35296038 35296203 -246897461 + CT-rich Low_complexity Low_complexity 3 168 0 395 315 61 20 chr1 35296290 35296487 -246897177 - L3 LINE CR1 -11 1566 1362 1075 91 0 0 chr1 35296826 35296958 -246896706 + AluSq/x SINE Alu 1 132 -180 2285 104 7 0 chr1 35296961 35297260 -246896404 + AluSp SINE Alu 1 301 -12 2268 73 0 0 chr1 35297260 35297532 -246896132 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 35297532 35297588 -246896076 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 35297696 35297830 -246895834 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 35297830 35298050 -246895614 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 35298053 35298191 -246895473 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 35298200 35298255 -246895409 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 35298548 35298651 -246895013 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 35299385 35299683 -246893981 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 35299709 35299870 -246893794 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 35299903 35300036 -246893628 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 35300039 35300354 -246893310 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 35300354 35300457 -246893207 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 35300534 35300832 -246892832 + AluSx SINE Alu 9 308 0 2287 116 3 0 chr1 35301396 35301697 -246891967 - AluSg SINE Alu -6 304 3 2019 137 0 7 chr1 35301845 35302184 -246891480 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 35302189 35302445 -246891219 + Charlie8 DNA MER1_type 57 204 -2213 2264 108 0 23 chr1 35302619 35302925 -246890739 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 35303218 35303417 -246890247 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 35303424 35303748 -246889916 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 35303752 35303804 -246889860 - MIR SINE MIR -61 147 96 2357 97 7 3 chr1 35303955 35304264 -246889400 + AluSg SINE Alu 1 310 0 456 178 164 34 chr1 35305920 35306066 -246887598 - MER117 DNA MER1_type -8 189 25 1975 128 55 0 chr1 35306068 35306358 -246887306 + AluSx SINE Alu 1 306 -6 2250 117 7 0 chr1 35306722 35307020 -246886644 + AluSp SINE Alu 2 301 -12 267 31 0 0 chr1 35308493 35308525 -246885139 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2066 111 3 35 chr1 35308525 35308676 -246884988 - AluSx SINE Alu -33 279 140 2133 108 0 7 chr1 35308676 35308964 -246884700 - AluSc SINE Alu -23 286 1 2066 111 3 35 chr1 35308964 35309100 -246884564 - AluSx SINE Alu -172 140 1 270 328 160 0 chr1 35309110 35309241 -246884423 - MIR SINE MIR -105 157 6 2202 114 0 23 chr1 35309526 35309833 -246883831 + AluSx SINE Alu 1 300 -12 2234 84 35 0 chr1 35310846 35311130 -246882534 - AluSc SINE Alu -15 294 1 249 312 43 0 chr1 35311363 35311456 -246882208 + L2 LINE L2 1846 1942 -1372 182 270 48 16 chr1 35311456 35311519 -246882145 + L2 LINE L2 2732 2796 -518 1957 203 118 0 chr1 35311576 35312009 -246881655 + MER44D DNA MER2_type 12 495 -210 2251 95 0 14 chr1 35312010 35312306 -246881358 - AluY SINE Alu -19 292 1 2253 84 28 3 chr1 35312315 35312602 -246881062 - AluSq SINE Alu -19 294 1 1159 175 65 104 chr1 35312603 35312911 -246880753 - AluJo SINE Alu -8 304 9 358 69 0 0 chr1 35312921 35312979 -246880685 - AluSp/q SINE Alu 0 303 246 246 302 13 31 chr1 35313155 35313314 -246880350 + (TCTCTG)n Simple_repeat Simple_repeat 3 158 0 * 398 357 11 14 chr1 35313264 35313504 -246880160 + CT-rich Low_complexity Low_complexity 1 239 0 248 352 7 14 chr1 35313528 35313673 -246879991 + CT-rich Low_complexity Low_complexity 1 144 0 185 156 0 44 chr1 35313699 35313744 -246879920 + CT-rich Low_complexity Low_complexity 2 44 0 397 261 26 9 chr1 35314907 35315022 -246878642 - MIR3 SINE MIR -38 170 54 372 337 64 0 chr1 35315122 35315294 -246878370 - MIR SINE MIR -6 256 74 2221 96 13 3 chr1 35315507 35315809 -246877855 - AluSp SINE Alu -8 305 1 374 164 14 14 chr1 35315819 35315892 -246877772 - MER20 DNA MER1_type -3 216 144 278 67 0 22 chr1 35315917 35315962 -246877702 + AluSp/q SINE Alu 254 297 -6 605 118 11 0 chr1 35315962 35316055 -246877609 - MER20 DNA MER1_type -84 135 42 259 211 19 0 chr1 35316231 35316283 -246877381 - MIR SINE MIR 0 262 210 2062 149 0 0 chr1 35316318 35316619 -246877045 + AluJb SINE Alu 1 301 -11 330 322 63 35 chr1 35316717 35316860 -246876804 + MIR3 SINE MIR 3 149 -59 2193 137 0 3 chr1 35316861 35317174 -246876490 + AluSx SINE Alu 1 312 0 222 37 0 0 chr1 35317332 35317359 -246876305 + (TA)n Simple_repeat Simple_repeat 2 28 0 2482 70 0 10 chr1 35317360 35317658 -246876006 - AluY SINE Alu -16 295 1 22 56 0 0 chr1 35317659 35317695 -246875969 + AT_rich Low_complexity Low_complexity 1 36 0 214 42 42 62 chr1 35317695 35317743 -246875921 + (TAAAAA)n Simple_repeat Simple_repeat 3 49 0 1894 110 0 0 chr1 35317747 35317992 -246875672 + AluSq SINE Alu 1 245 -68 1353 115 0 6 chr1 35317992 35318175 -246875489 - AluSg SINE Alu -128 182 1 524 244 114 28 chr1 35318430 35318531 -246875133 - Charlie8 DNA MER1_type -65 276 185 1629 148 10 77 chr1 35318531 35318842 -246874822 - AluJo SINE Alu -22 290 1 524 244 114 28 chr1 35318842 35318916 -246874748 - Charlie8 DNA MER1_type -156 185 86 309 140 0 0 chr1 35318916 35318966 -246874698 + L2 LINE L2 2666 2715 -599 1911 166 0 3 chr1 35318966 35319267 -246874397 + AluJb SINE Alu 1 300 -12 2325 59 0 4 chr1 35319269 35319542 -246874122 + AluY SINE Alu 1 272 -39 42 36 0 0 chr1 35319542 35319598 -246874066 + AT_rich Low_complexity Low_complexity 1 56 0 267 224 149 45 chr1 35319704 35319838 -246873826 + L2 LINE L2 2904 3051 -262 705 164 168 77 chr1 35319838 35320058 -246873606 - AluJo SINE Alu -9 303 64 960 138 0 0 chr1 35320061 35320199 -246873465 + AluJb SINE Alu 160 297 -15 359 109 0 0 chr1 35320208 35320263 -246873401 + HY3 scRNA scRNA 46 100 -1 278 262 117 39 chr1 35320556 35320659 -246873005 - L2 LINE L2 -3 3310 3200 2397 81 10 0 chr1 35321393 35321691 -246871973 - AluSp SINE Alu -8 305 5 815 224 6 0 chr1 35321717 35321878 -246871786 - FAM SINE Alu -13 162 1 470 263 143 0 chr1 35321911 35322044 -246871620 + MIR SINE MIR 71 222 -40 1919 162 0 29 chr1 35322047 35322362 -246871302 + AluSq SINE Alu 1 306 -7 303 117 19 39 chr1 35322362 35322465 -246871199 + (TA)n Simple_repeat Simple_repeat 2 102 0 2056 111 15 7 chr1 35322542 35322840 -246870824 + AluSx SINE Alu 9 308 0 2330 109 3 0 chr1 35323404 35323707 -246869957 - AluSg SINE Alu -6 304 1 2019 137 0 7 chr1 35323854 35324193 -246869471 - AluSg SINE Alu 0 337 1 348 316 94 16 chr1 35324198 35324454 -246869210 + Charlie8 DNA MER1_type 57 204 -2213 2264 108 0 23 chr1 35324628 35324934 -246868730 - AluSg SINE Alu -11 299 1 1205 166 0 20 chr1 35325227 35325426 -246868238 - AluJb SINE Alu 0 312 118 1771 157 12 49 chr1 35325433 35325757 -246867907 - AluJb SINE Alu 0 312 1 261 154 19 19 chr1 35325761 35325813 -246867851 - MIR SINE MIR -61 147 96 2358 97 7 3 chr1 35325964 35326300 -246867364 + AluSg SINE Alu 1 337 0 465 167 133 94 chr1 35327930 35328078 -246865586 - MER117 DNA MER1_type -8 189 31 2071 122 21 0 chr1 35328078 35328366 -246865298 + AluSx SINE Alu 1 294 -18 465 167 133 94 chr1 35328366 35328397 -246865267 - MER117 DNA MER1_type -166 31 3 2036 150 0 10 chr1 35328527 35328821 -246864843 - AluJo SINE Alu -19 293 3 543 264 104 6 chr1 35328825 35329007 -246864657 - MIR SINE MIR -38 224 25 292 246 62 54 chr1 35329054 35329184 -246864480 - MIR3 SINE MIR -69 139 9 2309 85 10 20 chr1 35329483 35329789 -246863875 - AluSg SINE Alu -7 303 1 225 301 23 0 chr1 35332072 35332169 -246861495 + MIR SINE MIR 39 138 -70 367 125 0 23 chr1 35333285 35333373 -246860291 + (CA)n Simple_repeat Simple_repeat 1 86 0 200 222 9 0 chr1 35333407 35333515 -246860149 + (CA)n Simple_repeat Simple_repeat 1 109 0 185 208 14 0 chr1 35333557 35333629 -246860035 + (CA)n Simple_repeat Simple_repeat 1 73 0 398 191 11 27 chr1 35333688 35333871 -246859793 + (CA)n Simple_repeat Simple_repeat 1 180 0 294 147 0 0 chr1 35333894 35333962 -246859702 + (CA)n Simple_repeat Simple_repeat 1 68 0 285 293 6 64 chr1 35333979 35334063 -246859601 + L2 LINE L2 2888 2975 -297 801 49 0 0 chr1 35334063 35334165 -246859499 + (TC)n Simple_repeat Simple_repeat 2 103 0 1578 169 60 0 chr1 35334165 35334432 -246859232 - AluJo SINE Alu -29 283 1 285 293 6 64 chr1 35334432 35334503 -246859161 + L2 LINE L2 2973 3035 -237 1600 117 0 0 chr1 35334511 35334716 -246858948 - AluSx SINE Alu -87 225 21 336 199 107 69 chr1 35334996 35335049 -246858615 - MIR3 SINE MIR -12 196 147 1471 211 48 3 chr1 35335049 35335343 -246858321 - AluJo SINE Alu -5 307 1 336 199 107 69 chr1 35335343 35335432 -246858232 - MIR3 SINE MIR -61 147 57 2031 159 0 7 chr1 35335435 35335736 -246857928 + AluJo SINE Alu 1 299 -13 2356 107 0 13 chr1 35335736 35336045 -246857619 + AluSc SINE Alu 1 305 -4 2375 78 0 0 chr1 35336047 35336329 -246857335 + AluSg SINE Alu 3 284 -26 1326 151 86 62 chr1 35336334 35336625 -246857039 + AluSx SINE Alu 1 298 -14 300 277 84 13 chr1 35336702 35336892 -246856772 + MIR SINE MIR 21 222 -40 2328 102 0 0 chr1 35337006 35337300 -246856364 + AluSg SINE Alu 1 294 -16 2096 128 0 3 chr1 35337301 35337583 -246856081 - AluSx SINE Alu -31 281 1 1006 116 116 70 chr1 35337597 35337796 -246855868 - AluY SINE Alu -1 310 103 10063 87 1 56 chr1 35337897 35339458 -246854206 - L1P LINE L1 -4657 1489 14 439 241 39 2 chr1 35339453 35339593 -246854071 - L1M4c LINE L1 -4596 1786 1533 * 4538 166 18 23 chr1 35339616 35340712 -246852952 - L1PA16 LINE L1 -11 6155 5068 782 247 8 4 chr1 35340715 35340958 -246852706 - L1M4c LINE L1 -3156 3226 2983 1480 246 42 8 chr1 35340968 35341488 -246852176 - L1M4c LINE L1 -4846 1538 1001 1033 271 41 35 chr1 35341467 35341697 -246851967 - L1M4 LINE L1 -942 5440 5213 * 1179 251 96 15 chr1 35341697 35341972 -246851692 - MLT1D LTR MaLR 0 505 254 381 22 0 0 chr1 35341972 35342018 -246851646 + (CA)n Simple_repeat Simple_repeat 2 47 0 1179 251 96 15 chr1 35342018 35342209 -246851455 - MLT1D LTR MaLR -251 254 1 1033 271 41 35 chr1 35342209 35342491 -246851173 - L1M4 LINE L1 -1169 5213 4925 1254 312 56 7 chr1 35343211 35343640 -246850024 - LTR33 LTR ERVL -71 450 1 1086 262 150 104 chr1 35343700 35344748 -246848916 - MER52A LTR ERV1 0 1755 660 213 298 156 28 chr1 35345306 35345447 -246848217 - MIR3 SINE MIR -20 188 30 274 292 83 21 chr1 35345860 35345956 -246847708 + L2 LINE L2 2685 2786 -528 33 56 0 0 chr1 35346096 35346150 -246847514 + AT_rich Low_complexity Low_complexity 1 54 0 2539 102 5 11 chr1 35346568 35346942 -246846722 + THE1C LTR MaLR 3 374 -1 2086 157 11 13 chr1 35346984 35347360 -246846304 + THE1C LTR MaLR 1 375 0 8049 132 69 48 chr1 35347360 35348903 -246844761 + THE1C-int LTR MaLR 1 1576 -4 1486 171 97 12 chr1 35348907 35349228 -246844436 + THE1C LTR MaLR 1 348 -27 457 187 77 0 chr1 35349342 35349433 -246844231 - AluJ/FLAM SINE Alu -213 99 2 288 300 138 19 chr1 35349577 35349737 -246843927 + MIR SINE MIR 84 262 0 2273 118 0 7 chr1 35349932 35350238 -246843426 - AluSx SINE Alu -8 304 1 362 256 231 19 chr1 35350455 35350615 -246843049 - MIR SINE MIR -16 246 53 217 333 74 7 chr1 35351152 35351287 -246842377 + L2 LINE L2 2972 3115 -157 690 286 75 4 chr1 35351358 35351585 -246842079 - MIR SINE MIR 0 262 20 1468 128 86 4 chr1 35352576 35352810 -246840854 + AluJo SINE Alu 1 253 -59 2444 83 0 3 chr1 35353044 35353346 -246840318 - AluSx SINE Alu -11 301 1 459 271 33 8 chr1 35353350 35353472 -246840192 - MIR SINE MIR -65 143 19 2322 97 7 10 chr1 35354424 35354733 -246838931 - AluSg SINE Alu -2 308 1 411 125 0 0 chr1 35354734 35354798 -246838866 + AluSp/q SINE Alu 187 250 -63 1097 143 27 80 chr1 35354798 35355022 -246838642 + AluJb SINE Alu 85 296 -16 31 0 0 0 chr1 35355022 35355053 -246838611 + AT_rich Low_complexity Low_complexity 1 31 0 1863 171 4 0 chr1 35355174 35355487 -246838177 + AluJb SINE Alu 1 314 0 286 183 134 37 chr1 35355497 35355579 -246838085 + U3 snRNA snRNA 1 90 -127 648 161 81 16 chr1 35355661 35355785 -246837879 + AluJo/FLAM SINE Alu 2 133 -169 1660 109 0 5 chr1 35355785 35355995 -246837669 + AluSc SINE Alu 1 209 -100 296 77 0 0 chr1 35355995 35356085 -246837579 + AluSc SINE Alu 242 331 0 1015 128 11 91 chr1 35356245 35356432 -246837232 - AluJ SINE Alu -4 308 137 306 50 0 0 chr1 35356432 35356472 -246837192 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2122 114 3 17 chr1 35356472 35356762 -246836902 - AluSx SINE Alu -26 286 1 297 75 0 0 chr1 35356770 35356810 -246836854 + (T)n Simple_repeat Simple_repeat 1 40 0 886 144 7 55 chr1 35356834 35356980 -246836684 - AluJ SINE Alu -169 143 5 1392 160 0 5 chr1 35357063 35357275 -246836389 - AluJb SINE Alu -17 295 85 2282 77 0 74 chr1 35357276 35357600 -246836064 - AluSg SINE Alu -10 300 1 859 154 6 74 chr1 35357603 35357778 -246835886 - FRAM SINE Alu -3 163 1 2034 162 0 0 chr1 35357797 35358099 -246835565 - AluJo SINE Alu -10 302 1 1940 158 0 19 chr1 35358547 35358863 -246834801 + AluJb SINE Alu 3 312 0 418 240 6 101 chr1 35358868 35359047 -246834617 + MIR SINE MIR 72 233 -29 253 164 43 95 chr1 35359128 35359244 -246834420 + MER113 DNA MER1_type? 108 217 -304 296 240 0 40 chr1 35359412 35359487 -246834177 + AluJo/FLAM SINE Alu 49 120 -182 2154 90 0 8 chr1 35359490 35359758 -246833906 - AluSq SINE Alu -19 294 29 1374 113 6 0 chr1 35359766 35359973 -246833691 + AluSg/x SINE Alu 102 309 0 769 169 0 0 chr1 35359991 35360115 -246833549 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 35360129 35360304 -246833360 + FRAM SINE Alu 1 170 -6 282 263 26 0 chr1 35360304 35360380 -246833284 - L2 LINE L2 -20 3293 3216 666 273 32 28 chr1 35360738 35360954 -246832710 - MIR SINE MIR -38 224 8 236 300 30 10 chr1 35360966 35361066 -246832598 + L1ME4a LINE L1 5959 6060 -61 755 132 0 76 chr1 35361090 35361234 -246832430 - FLAM_C SINE Alu 0 133 1 2380 93 3 6 chr1 35361289 35361602 -246832062 + AluSp SINE Alu 1 312 -1 596 143 0 0 chr1 35361606 35361697 -246831967 + AluSg/x SINE Alu 127 217 -95 1238 120 0 6 chr1 35361697 35361864 -246831800 - AluSx SINE Alu -146 166 1 538 160 11 0 chr1 35361867 35361961 -246831703 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 35362225 35362259 -246831405 + (TG)n Simple_repeat Simple_repeat 1 34 0 1647 86 14 5 chr1 35362519 35362729 -246830935 + AluSc SINE Alu 1 212 -97 2027 129 17 0 chr1 35362730 35363017 -246830647 - AluSq SINE Alu -21 292 1 276 142 30 67 chr1 35363019 35363085 -246830579 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 35364157 35364211 -246829453 + (TC)n Simple_repeat Simple_repeat 1 54 0 312 303 7 42 chr1 35364326 35364468 -246829196 + MIR3 SINE MIR 60 196 -12 2329 97 10 0 chr1 35366380 35366680 -246826984 + AluSq SINE Alu 10 312 -1 1438 147 3 142 chr1 35366691 35367044 -246826620 + AluSx SINE Alu 1 304 -8 287 274 19 47 chr1 35367895 35368001 -246825663 + MER5B DNA MER1_type 27 129 -49 317 183 183 0 chr1 35369186 35369268 -246824396 + MIR SINE MIR 30 126 -82 2208 120 7 0 chr1 35369444 35369743 -246823921 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 35369761 35369802 -246823862 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 927 165 51 76 chr1 35369807 35369856 -246823808 - L1ME3A LINE L1 -16 6154 6105 2153 104 7 0 chr1 35369856 35370163 -246823501 + AluSq SINE Alu 6 314 0 927 165 51 76 chr1 35370163 35370349 -246823315 - L1ME3A LINE L1 -65 6105 5924 859 146 44 6 chr1 35370349 35370507 -246823157 - MER5A DNA MER1_type -2 187 24 1105 183 9 43 chr1 35370524 35370754 -246822910 - AluJo SINE Alu -16 296 75 2432 53 0 11 chr1 35370754 35371038 -246822626 + AluY SINE Alu 1 281 -30 1225 160 45 80 chr1 35371038 35371350 -246822314 + AluJb SINE Alu 2 302 -10 2187 96 33 3 chr1 35371403 35371706 -246821958 - AluSx SINE Alu 0 312 1 2431 89 0 3 chr1 35371708 35372012 -246821652 - AluY SINE Alu -8 303 1 2114 127 10 3 chr1 35372014 35372314 -246821350 - AluJb SINE Alu -5 307 6 2273 123 3 0 chr1 35372343 35372653 -246821011 - AluSx SINE Alu -1 311 1 2195 141 0 0 chr1 35372653 35372956 -246820708 - AluSx SINE Alu -8 304 1 243 0 0 0 chr1 35372991 35373018 -246820646 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 693 138 0 43 chr1 35373021 35373159 -246820505 + FLAM_C SINE Alu 1 132 -11 527 77 0 13 chr1 35373611 35373689 -246819975 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 2185 96 20 0 chr1 35373689 35373990 -246819674 - AluSq SINE Alu -6 307 1 1097 75 0 8 chr1 35373993 35374127 -246819537 - AluSq/x SINE Alu -180 133 1 194 233 0 0 chr1 35374236 35374279 -246819385 - MIR SINE MIR -101 161 119 229 273 157 16 chr1 35376376 35376497 -246817167 - L3 LINE CR1 -108 1469 1332 257 353 96 6 chr1 35376802 35376958 -246816706 - L2 LINE L2 -254 3059 2890 681 140 88 0 chr1 35376960 35377074 -246816590 - Tigger7 DNA MER2_type 0 2487 2364 224 49 49 0 chr1 35377074 35377115 -246816549 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 1225 108 0 6 chr1 35377115 35377281 -246816383 - AluSg/x SINE Alu -1 323 119 186 43 0 0 chr1 35377285 35377308 -246816356 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 1079 173 0 0 chr1 35377316 35377478 -246816186 - AluSg/x SINE Alu -21 291 130 1935 168 3 13 chr1 35377488 35377661 -246816003 - AluSx SINE Alu -6 306 136 2168 135 0 22 chr1 35377661 35377980 -246815684 - AluSx SINE Alu 0 312 1 1935 168 3 13 chr1 35377980 35378115 -246815549 - AluSx SINE Alu -176 136 1 377 96 169 0 chr1 35378115 35378198 -246815466 - Tigger7 DNA MER2_type -121 2466 2370 453 173 25 0 chr1 35378251 35378332 -246815332 + AluJ/FLAM SINE Alu 2 84 -228 309 274 19 47 chr1 35378913 35379019 -246814645 + MER5B DNA MER1_type 27 129 -49 356 218 196 15 chr1 35380204 35380337 -246813327 + MIR3 SINE MIR 30 186 -22 2200 120 7 0 chr1 35380462 35380761 -246812903 + AluY SINE Alu 1 301 -10 306 73 0 0 chr1 35380779 35380820 -246812844 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 915 151 53 80 chr1 35380825 35380874 -246812790 - L1ME3A LINE L1 -16 6154 6105 2141 104 7 0 chr1 35380874 35381181 -246812483 + AluSq SINE Alu 6 314 0 915 151 53 80 chr1 35381181 35381355 -246812309 - L1ME3A LINE L1 -65 6105 5936 928 145 44 6 chr1 35381366 35381525 -246812139 - MER5A DNA MER1_type -1 188 24 1107 183 9 43 chr1 35381542 35381772 -246811892 - AluJo SINE Alu -16 296 75 2571 32 0 0 chr1 35381772 35382053 -246811611 + AluYa5 SINE Alu 1 281 -30 1249 160 45 80 chr1 35382053 35382365 -246811299 + AluJb SINE Alu 2 302 0 2147 102 33 3 chr1 35382418 35382721 -246810943 - AluSx SINE Alu 0 312 1 2209 114 3 16 chr1 35382723 35383031 -246810633 - AluSx SINE Alu -8 304 1 183 139 0 0 chr1 35383039 35383075 -246810589 + (T)n Simple_repeat Simple_repeat 1 36 0 884 144 7 55 chr1 35383099 35383245 -246810419 - AluJo SINE Alu -169 143 5 1387 160 0 5 chr1 35383328 35383540 -246810124 - AluJb SINE Alu -17 295 85 2274 77 0 74 chr1 35383541 35383865 -246809799 - AluSg SINE Alu -10 300 1 931 154 6 74 chr1 35383868 35384043 -246809621 - FRAM SINE Alu -3 163 1 2010 166 0 0 chr1 35384062 35384364 -246809300 - AluJo SINE Alu -10 302 1 1931 158 0 19 chr1 35384812 35385128 -246808536 + AluJb SINE Alu 3 312 0 451 240 6 101 chr1 35385133 35385312 -246808352 + MIR SINE MIR 72 233 -29 304 176 59 12 chr1 35385393 35385478 -246808186 + MER113 DNA MER1_type? 108 196 -325 282 240 0 40 chr1 35385677 35385752 -246807912 + AluJo/FLAM SINE Alu 49 120 -182 2145 97 0 4 chr1 35385755 35386022 -246807642 - AluSq SINE Alu -19 294 29 1274 147 6 0 chr1 35386030 35386237 -246807427 + AluSg/x SINE Alu 104 311 0 822 169 0 0 chr1 35386255 35386379 -246807285 - FLAM_C SINE Alu -9 124 1 992 194 6 6 chr1 35386393 35386568 -246807096 + FRAM SINE Alu 1 170 -6 301 263 26 0 chr1 35386568 35386644 -246807020 - L2 LINE L2 -20 3293 3216 718 273 32 28 chr1 35387002 35387218 -246806446 - MIR SINE MIR -38 224 8 811 132 0 76 chr1 35387354 35387498 -246806166 - FLAM_C SINE Alu 0 133 1 2369 93 3 6 chr1 35387553 35387866 -246805798 + AluSp SINE Alu 1 312 -1 635 143 0 0 chr1 35387870 35387961 -246805703 + AluSg/x SINE Alu 125 215 -95 1234 120 0 6 chr1 35387961 35388128 -246805536 - AluSx SINE Alu -146 166 1 574 160 11 0 chr1 35388131 35388225 -246805439 - FRAM SINE Alu -19 157 63 273 29 0 0 chr1 35388489 35388523 -246805141 + (TG)n Simple_repeat Simple_repeat 1 34 0 1636 86 14 5 chr1 35388783 35388993 -246804671 + AluSc SINE Alu 1 212 -97 1948 124 17 10 chr1 35388994 35389284 -246804380 - AluSq SINE Alu -21 292 1 297 142 30 67 chr1 35389286 35389352 -246804312 - MIR SINE MIR -62 146 89 432 37 0 0 chr1 35390424 35390478 -246803186 + (TC)n Simple_repeat Simple_repeat 1 54 0 335 303 7 42 chr1 35390593 35390735 -246802929 + MIR3 SINE MIR 60 196 -12 186 304 58 0 chr1 35392571 35392640 -246801024 - MIR SINE MIR -109 153 81 2343 93 10 0 chr1 35392647 35392947 -246800717 + AluSq SINE Alu 10 312 -1 1426 153 0 139 chr1 35392958 35393311 -246800353 + AluSx SINE Alu 1 304 -8 431 20 0 0 chr1 35393820 35393869 -246799795 + (TC)n Simple_repeat Simple_repeat 2 50 0 623 113 0 17 chr1 35396316 35396432 -246797232 - L1MA3 LINE L1 -27 6276 6168 1143 155 0 11 chr1 35396435 35396609 -246797055 + AluJo SINE Alu 126 297 -15 24 0 0 0 chr1 35396611 35396635 -246797029 + AT_rich Low_complexity Low_complexity 1 24 0 2356 92 0 0 chr1 35396707 35397010 -246796654 - AluY SINE Alu -8 303 1 2278 104 7 0 chr1 35397010 35397309 -246796355 - AluSp SINE Alu -12 301 1 1087 83 0 0 chr1 35397312 35397444 -246796220 - AluSq/x SINE Alu -181 132 1 433 315 61 20 chr1 35397783 35397980 -246795684 + L3 LINE CR1 1362 1566 -11 243 256 38 7 chr1 35398028 35398108 -246795556 + GA-rich Low_complexity Low_complexity 1 82 0 413 278 112 69 chr1 35398237 35398763 -246794901 - L1M4 LINE L1 -1206 1537 937 23 33 0 0 chr1 35399027 35399057 -246794607 + GC_rich Low_complexity Low_complexity 1 30 0 344 238 238 24 chr1 35399663 35399827 -246793837 - L2 LINE L2 -180 3092 2894 2495 66 3 3 chr1 35399833 35400134 -246793530 + AluSx SINE Alu 1 301 -11 209 358 91 11 chr1 35400134 35400278 -246793386 - L2 LINE L2 -483 2831 2667 2086 139 0 19 chr1 35400278 35400416 -246793248 + AluSx SINE Alu 1 140 -172 2492 81 0 0 chr1 35400416 35400713 -246792951 + AluSg SINE Alu 1 297 -13 2086 139 0 19 chr1 35400713 35400884 -246792780 + AluSx SINE Alu 140 304 -8 209 358 91 11 chr1 35400884 35400926 -246792738 - L2 LINE L2 -647 2667 2630 2060 104 10 24 chr1 35400942 35401230 -246792434 - AluSx SINE Alu -17 295 12 2155 82 0 47 chr1 35401305 35401622 -246792042 - AluY SINE Alu -9 302 1 469 119 0 0 chr1 35401623 35401690 -246791974 + AluSc SINE Alu 185 251 -58 1723 144 35 18 chr1 35402422 35402706 -246790958 - AluJb SINE Alu -21 291 3 2402 85 0 19 chr1 35402710 35403026 -246790638 - AluY SINE Alu -1 310 1 809 115 0 72 chr1 35403031 35403170 -246790494 - FLAM_C SINE Alu -5 138 10 239 270 0 32 chr1 35403220 35403283 -246790381 - L2 LINE L2 -979 2335 2275 1009 166 121 87 chr1 35403298 35403345 -246790319 - MLT1A1 LTR MaLR 0 457 413 1798 166 45 0 chr1 35403345 35403635 -246790029 + AluJb SINE Alu 2 304 -8 1009 166 121 87 chr1 35403635 35403954 -246789710 - MLT1A1 LTR MaLR -44 413 1 249 33 0 0 chr1 35403974 35404004 -246789660 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 531 168 178 0 chr1 35404004 35404105 -246789559 - FLAM_C SINE Alu -24 119 1 513 281 58 0 chr1 35404276 35404415 -246789249 + L2 LINE L2 3167 3313 0 1626 135 46 92 chr1 35404587 35404891 -246788773 - AluJb SINE Alu -22 290 1 262 344 129 34 chr1 35404978 35405426 -246788238 - L2 LINE L2 -1635 1679 1189 1682 142 13 63 chr1 35405472 35405789 -246787875 + AluJb SINE Alu 1 301 -11 2100 81 14 30 chr1 35405825 35405990 -246787674 - AluY SINE Alu -20 291 125 2608 64 0 0 chr1 35405990 35406301 -246787363 - AluY SINE Alu 0 311 1 2389 77 7 3 chr1 35406301 35406599 -246787065 - AluSp SINE Alu -14 299 1 2100 81 14 30 chr1 35406599 35406728 -246786936 - AluY SINE Alu -184 127 1 294 320 87 0 chr1 35406782 35406885 -246786779 + MIR SINE MIR 50 161 -101 2288 101 0 3 chr1 35406933 35407229 -246786435 + AluSx SINE Alu 6 300 -12 519 150 210 0 chr1 35407523 35407623 -246786041 + FLAM_C SINE Alu 11 131 -12 2506 72 0 7 chr1 35407987 35408292 -246785372 + AluY SINE Alu 1 303 -8 328 224 141 0 chr1 35408315 35408400 -246785264 + MIR SINE MIR 30 126 -82 208 355 130 49 chr1 35408428 35408513 -246785151 - L2 LINE L2 -72 3200 3123 1922 137 7 11 chr1 35408513 35408798 -246784866 + AluSx SINE Alu 27 310 -2 208 355 130 49 chr1 35408798 35409015 -246784649 - L2 LINE L2 -149 3123 2868 1212 166 0 48 chr1 35409015 35409244 -246784420 - MER58A DNA MER1_type -4 220 3 208 355 130 49 chr1 35409244 35409264 -246784400 - L2 LINE L2 -404 2868 2851 2590 68 0 0 chr1 35409377 35409687 -246783977 + AluY SINE Alu 1 310 -1 2238 116 3 0 chr1 35409700 35409993 -246783671 + AluSx SINE Alu 1 294 -18 628 143 0 31 chr1 35410031 35410129 -246783535 - FLAM_A SINE Alu -43 99 5 348 377 63 0 chr1 35410148 35410323 -246783341 - L2 LINE L2 -533 2781 2596 272 200 70 80 chr1 35410323 35410423 -246783241 + MIR SINE MIR 117 215 -47 189 289 19 0 chr1 35411033 35411085 -246782579 - L2 LINE L2 0 3313 3261 1907 167 0 3 chr1 35411102 35411396 -246782268 + AluJo SINE Alu 1 293 -19 1900 163 26 10 chr1 35411396 35411702 -246781962 + AluJb SINE Alu 1 312 0 326 205 0 26 chr1 35411808 35411886 -246781778 - Charlie8 DNA MER1_type -2254 163 88 1186 174 5 16 chr1 35411893 35412083 -246781581 + AluJb SINE Alu 104 291 -21 193 297 54 14 chr1 35412262 35412336 -246781328 - L2 LINE L2 -665 2649 2573 1471 185 0 53 chr1 35412640 35412775 -246780889 - AluJo SINE Alu -43 269 155 2020 149 23 3 chr1 35412775 35413076 -246780588 - AluSx SINE Alu -5 307 1 1471 185 0 53 chr1 35413076 35413221 -246780443 - AluJo SINE Alu -157 155 4 29 28 0 0 chr1 35413226 35413262 -246780402 + AT_rich Low_complexity Low_complexity 1 36 0 1200 260 116 8 chr1 35413277 35413308 -246780356 - L1ME3A LINE L1 -209 5961 5931 450 303 129 26 chr1 35413308 35413814 -246779850 - L1MB4 LINE L1 -253 5927 5362 1952 172 3 0 chr1 35413814 35414122 -246779542 - AluJb SINE Alu -3 309 1 450 303 129 26 chr1 35414122 35414150 -246779514 - L1MB4 LINE L1 -818 5362 5338 257 204 0 0 chr1 35414153 35414202 -246779462 - L2 LINE L2 0 3313 3265 581 216 23 29 chr1 35414202 35414373 -246779291 - L1MB4 LINE L1 -1303 4843 4674 1774 107 114 11 chr1 35414390 35414670 -246778994 - AluSg1 SINE Alu 0 309 1 866 181 0 0 chr1 35414670 35414801 -246778863 - AluJo/FRAM SINE Alu -10 302 169 2394 197 49 43 chr1 35414950 35415176 -246778488 - Tigger7 DNA MER2_type 0 2587 2364 2216 130 3 0 chr1 35415176 35415476 -246778188 + AluSq SINE Alu 1 301 -12 2394 197 49 43 chr1 35415476 35415942 -246777722 - Tigger7 DNA MER2_type -223 2364 1 180 235 0 0 chr1 35416003 35416037 -246777627 - L2 LINE L2 -229 3043 3010 2501 65 3 0 chr1 35416250 35416543 -246777121 + AluSp SINE Alu 1 294 -19 180 0 0 0 chr1 35416704 35416724 -246776940 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2462 80 0 0 chr1 35416729 35417030 -246776634 - AluY SINE Alu -10 301 1 1850 181 3 0 chr1 35417032 35417324 -246776340 - AluJb SINE Alu -19 293 1 295 316 101 89 chr1 35417329 35417576 -246776088 - L2 LINE L2 -1 3271 3022 897 198 0 45 chr1 35417582 35417617 -246776047 - FAM SINE Alu -140 45 146 2335 93 23 0 chr1 35417617 35417918 -246775746 + AluSq SINE Alu 1 308 -5 897 198 0 45 chr1 35417918 35418059 -246775605 - FAM SINE Alu -38 147 1 218 316 158 26 chr1 35418064 35418216 -246775448 - L2 LINE L2 -243 3029 2858 256 194 32 32 chr1 35418306 35418368 -246775296 + Charlie8 DNA MER1_type 149 210 -2207 318 312 45 26 chr1 35418488 35418642 -246775022 - L2 LINE L2 -470 2844 2688 831 177 0 0 chr1 35418646 35418776 -246774888 + FLAM_A SINE Alu 3 132 -1 2271 97 13 0 chr1 35418780 35419190 -246774474 + AluSq SINE Alu 1 414 0 366 317 193 15 chr1 35419190 35419392 -246774272 - L2 LINE L2 -622 2692 2455 2134 131 3 0 chr1 35419403 35419693 -246773971 + AluSx SINE Alu 6 296 -16 244 359 58 52 chr1 35419796 35420178 -246773486 - L2 LINE L2 -778 2536 2153 722 211 8 8 chr1 35420223 35420356 -246773308 - FLAM_A SINE Alu 0 133 1 513 248 8 32 chr1 35420439 35420564 -246773100 + MIR SINE MIR 36 157 -105 2164 121 7 3 chr1 35420568 35420873 -246772791 - AluSq SINE Alu -7 306 1 2226 133 0 0 chr1 35420879 35421188 -246772476 - AluSx SINE Alu -3 309 1 2052 124 7 0 chr1 35421286 35421607 -246772057 - AluSq SINE Alu 0 313 1 461 143 0 0 chr1 35421632 35421695 -246771969 - FLAM SINE Alu -26 117 55 315 250 62 10 chr1 35421706 35421802 -246771862 + MIR SINE MIR 162 262 0 4932 130 46 36 chr1 35421832 35422416 -246771248 + MER6 DNA MER2_type 3 580 -285 1972 142 3 7 chr1 35422416 35422705 -246770959 - AluJb SINE Alu -24 288 1 4932 130 46 36 chr1 35422705 35422758 -246770906 + MER6 DNA MER2_type 580 631 -234 2596 57 0 0 chr1 35422758 35423056 -246770608 + AluY SINE Alu 2 299 -12 4932 130 46 36 chr1 35423056 35423268 -246770396 + MER6 DNA MER2_type 631 861 -4 2371 112 0 0 chr1 35423561 35423865 -246769799 - AluSq SINE Alu -9 304 1 655 71 301 0 chr1 35423877 35423990 -246769674 - THE1B LTR MaLR -214 150 4 775 106 0 0 chr1 35423990 35424094 -246769570 - FLAM_C SINE Alu -38 105 2 198 118 0 0 chr1 35424100 35424134 -246769530 + (T)n Simple_repeat Simple_repeat 1 34 0 931 154 6 74 chr1 35424275 35424450 -246769214 + FRAM SINE Alu 1 163 -3 2340 88 0 23 chr1 35424453 35424759 -246768905 + AluSg SINE Alu 1 299 -11 2300 106 3 3 chr1 35424760 35425063 -246768601 + AluSg SINE Alu 1 303 -7 1369 118 0 44 chr1 35425065 35425269 -246768395 - AluJb SINE Alu -115 197 3 235 246 0 18 chr1 35425391 35425448 -246768216 + GA-rich Low_complexity Low_complexity 1 56 0 1923 141 3 7 chr1 35425657 35425993 -246767671 + AluSx SINE Alu 1 335 0 1012 209 5 15 chr1 35425998 35426194 -246767470 + AluJb SINE Alu 1 194 -118 1703 146 4 21 chr1 35426197 35426478 -246767186 + AluJb SINE Alu 25 300 -12 746 143 18 0 chr1 35426931 35427043 -246766621 + FLAM_A SINE Alu 13 126 -16 224 295 91 8 chr1 35427072 35427191 -246766473 + MIR3 SINE MIR 66 156 -52 886 146 0 0 chr1 35427311 35427441 -246766223 - FLAM_C SINE Alu -3 130 1 2013 110 88 0 chr1 35427468 35427740 -246765924 + AluSx SINE Alu 1 296 -16 746 143 18 0 chr1 35428424 35428536 -246765128 + FLAM_A SINE Alu 13 126 -16 224 281 97 0 chr1 35428566 35428652 -246765012 + MIR3 SINE MIR 67 160 -48 772 128 0 0 chr1 35428868 35428977 -246764687 - FLAM_C SINE Alu -33 110 2 1936 99 88 0 chr1 35429005 35429278 -246764386 + AluSx SINE Alu 1 297 -15 222 118 0 0 chr1 35429888 35429922 -246763742 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 659 182 99 0 chr1 35429922 35430043 -246763621 - FLAM_C SINE Alu 0 133 1 1610 141 0 66 chr1 35430043 35430291 -246763373 - AluJb SINE Alu -23 289 63 2180 86 0 32 chr1 35430291 35430606 -246763058 + AluY SINE Alu 1 305 -6 1610 141 0 66 chr1 35430606 35430662 -246763002 - AluJb SINE Alu -249 63 5 1164 105 0 82 chr1 35430766 35430941 -246762723 + MER6 DNA MER2_type 450 605 -260 1855 142 3 7 chr1 35430941 35431230 -246762434 - AluJb SINE Alu -24 288 1 1164 105 0 82 chr1 35431230 35431273 -246762391 + MER6 DNA MER2_type 605 650 -215 2273 82 7 0 chr1 35431283 35431588 -246762076 + AluSx SINE Alu 2 308 -4 2371 58 0 7 chr1 35431598 35431892 -246761772 + AluY SINE Alu 1 292 -19 308 260 96 0 chr1 35431940 35432044 -246761620 - MIR SINE MIR -70 192 79 300 288 144 13 chr1 35432628 35432781 -246760883 + MIR3 SINE MIR 16 188 -20 2007 89 39 0 chr1 35433568 35433848 -246759816 - AluSp SINE Alu -22 291 1 1797 136 24 20 chr1 35433874 35434168 -246759496 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 35434212 35434238 -246759426 + AT_rich Low_complexity Low_complexity 1 26 0 2278 95 0 0 chr1 35434436 35434730 -246758934 + AluSx SINE Alu 1 294 -18 732 168 0 0 chr1 35434740 35434847 -246758817 + FLAM_A SINE Alu 18 124 -18 577 186 0 0 chr1 35435064 35435166 -246758498 - FRAM SINE Alu -3 173 72 1292 176 13 70 chr1 35435215 35435527 -246758137 + AluJo SINE Alu 2 295 -17 2302 69 0 13 chr1 35435534 35435838 -246757826 + AluY SINE Alu 1 300 -11 207 311 81 0 chr1 35436097 35436171 -246757493 - MIR SINE MIR -92 116 37 2264 119 0 0 chr1 35436217 35436529 -246757135 + AluSx SINE Alu 1 312 0 2139 77 0 0 chr1 35436582 35436855 -246756809 + AluY SINE Alu 34 306 -5 2141 102 27 0 chr1 35437876 35438170 -246755494 - AluSx SINE Alu -10 302 1 681 275 22 27 chr1 35438371 35438593 -246755071 + MIR SINE MIR 12 232 -30 2289 76 3 7 chr1 35438622 35438924 -246754740 + AluSg SINE Alu 1 301 -9 227 378 31 0 chr1 35438925 35439052 -246754612 - L2 LINE L2 -486 2828 2698 1915 144 0 20 chr1 35439066 35439204 -246754460 + AluSx SINE Alu 1 140 -172 2329 81 0 3 chr1 35439204 35439502 -246754162 + AluSg SINE Alu 1 297 -13 1915 144 0 20 chr1 35439502 35439668 -246753996 + AluSx SINE Alu 140 299 -13 1997 146 0 0 chr1 35440030 35440332 -246753332 - AluSx SINE Alu -10 302 1 320 333 63 0 chr1 35440334 35440460 -246753204 + MIR SINE MIR 123 256 -6 1165 192 108 63 chr1 35440649 35440936 -246752728 + AluJo SINE Alu 1 300 -2 300 324 37 0 chr1 35440943 35441051 -246752613 - MIR SINE MIR -139 123 12 1489 147 51 48 chr1 35441327 35441619 -246752045 + AluJb SINE Alu 6 298 -14 308 270 81 67 chr1 35442019 35442378 -246751286 - L1ME4a LINE L1 -54 6067 5704 2170 82 0 10 chr1 35442378 35442669 -246750995 + AluSx SINE Alu 1 288 -24 2083 117 0 13 chr1 35442795 35443102 -246750562 - AluSx SINE Alu -9 303 1 502 209 45 142 chr1 35443116 35443384 -246750280 + MER112 DNA MER1_type 8 249 -11 1674 116 11 36 chr1 35444955 35445232 -246748432 - AluSg SINE Alu -15 295 26 193 317 175 25 chr1 35445969 35446089 -246747575 - L2 LINE L2 -17 3255 3118 1139 172 22 26 chr1 35446104 35446331 -246747333 - L1M3e LINE L1 -5010 2020 1795 183 304 106 63 chr1 35446398 35446605 -246747059 - L2 LINE L2 -213 3059 2844 213 345 142 35 chr1 35446712 35446938 -246746726 - L2 LINE L2 -6 3266 3017 32 0 0 0 chr1 35449769 35449801 -246743863 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr1 35452329 35452368 -246741296 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr1 35452384 35452413 -246741251 + GC_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 35452501 35452531 -246741133 + GC_rich Low_complexity Low_complexity 1 30 0 233 268 270 25 chr1 35453764 35454160 -246739504 - L2 LINE L2 -742 2572 2080 801 162 0 0 chr1 35454554 35454690 -246738974 - FRAM SINE Alu -1 175 40 1115 118 140 0 chr1 35455478 35455664 -246738000 + MER30 DNA MER1_type 1 212 -18 434 324 129 47 chr1 35455766 35456022 -246737642 - L1MC4a LINE L1 -1160 6648 6372 455 188 51 8 chr1 35456043 35456160 -246737504 - L1MB7 LINE L1 0 6184 6063 2305 87 3 0 chr1 35456165 35456464 -246737200 - AluY SINE Alu -11 300 1 6506 125 86 5 chr1 35456464 35457551 -246736113 - Tigger1 DNA MER2_type -1236 1182 8 448 111 28 0 chr1 35457927 35457999 -246735665 - AluSq/x SINE Alu -199 113 40 254 80 0 40 chr1 35458000 35458050 -246735614 + Alu SINE Alu 254 301 0 * 383 156 0 0 chr1 35458049 35458113 -246735551 + MLT1C LTR MaLR 112 175 -292 598 40 0 13 chr1 35458116 35458192 -246735472 - AluSg/x SINE Alu -20 289 215 760 222 27 7 chr1 35458192 35458433 -246735231 + MLT1C LTR MaLR 172 467 0 194 305 32 21 chr1 35458433 35458528 -246735136 + L2 LINE L2 3185 3280 -33 336 272 179 23 chr1 35459789 35459962 -246733702 + MIR SINE MIR 7 206 -56 826 148 40 7 chr1 35459962 35460111 -246733553 + FRAM SINE Alu 1 153 -23 1478 147 4 49 chr1 35460968 35461233 -246732431 + AluJb SINE Alu 44 296 -16 2458 57 7 0 chr1 35461304 35461603 -246732061 - AluY SINE Alu -10 301 1 319 193 193 9 chr1 35461791 35461900 -246731764 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 35461915 35462075 -246731589 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 35463322 35463509 -246730155 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 35463509 35463815 -246729849 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 35463815 35464065 -246729599 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 35464093 35464238 -246729426 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 35464309 35464455 -246729209 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 35464864 35465162 -246728502 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 35465701 35465746 -246727918 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 35465824 35465968 -246727696 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 35466036 35466102 -246727562 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 35466842 35467147 -246726517 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 35467283 35467419 -246726245 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 35467572 35467729 -246725935 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 35469023 35469469 -246724195 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 35469590 35469761 -246723903 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 35469773 35469969 -246723695 + L2 LINE L2 2554 2758 -556 283 323 21 94 chr1 35470277 35470358 -246723306 + L2 LINE L2 2949 3034 -238 2088 95 0 3 chr1 35470358 35470672 -246722992 + AluSx SINE Alu 3 315 0 283 323 21 94 chr1 35470672 35470917 -246722747 + L2 LINE L2 3034 3252 -20 22 0 0 0 chr1 35472162 35472184 -246721480 + GC_rich Low_complexity Low_complexity 1 22 0 307 217 11 54 chr1 35473397 35473489 -246720175 - MIR SINE MIR -55 153 66 314 314 0 0 chr1 35474220 35474357 -246719307 + (TG)n Simple_repeat Simple_repeat 1 137 0 437 157 12 12 chr1 35474520 35474603 -246719061 + AluJ/FLAM SINE Alu 2 84 -228 206 306 0 0 chr1 35475134 35475196 -246718468 - L2 LINE L2 -292 2980 2919 369 267 52 0 chr1 35475272 35475407 -246718257 + MIR3 SINE MIR 22 163 -45 1810 134 0 4 chr1 35476261 35476529 -246717135 + AluSx SINE Alu 28 294 -18 845 122 0 30 chr1 35476550 35476681 -246716983 + FLAM_C SINE Alu 1 127 -16 1661 126 56 4 chr1 35476686 35476988 -246716676 + AluSx SINE Alu 1 316 0 262 331 141 0 chr1 35477033 35477154 -246716510 - MIR SINE MIR -8 254 117 2235 108 3 0 chr1 35477956 35478263 -246715401 + AluSq SINE Alu 1 308 -5 253 343 67 8 chr1 35478359 35478493 -246715171 + MIR SINE MIR 51 192 -70 494 207 120 53 chr1 35478531 35478681 -246714983 + MIR SINE MIR 63 222 -40 2165 99 0 13 chr1 35478686 35478982 -246714682 + AluSc SINE Alu 1 294 -15 396 40 0 0 chr1 35478982 35479032 -246714632 + (CA)n Simple_repeat Simple_repeat 2 51 0 222 191 0 0 chr1 35479338 35479385 -246714279 + CT-rich Low_complexity Low_complexity 2 48 0 1781 150 7 16 chr1 35479393 35479699 -246713965 - AluJo SINE Alu 0 312 10 2400 87 0 0 chr1 35479911 35480222 -246713442 - AluSx SINE Alu -1 311 1 403 164 106 39 chr1 35480251 35480355 -246713309 - MSTD LTR MaLR -285 111 1 379 261 125 28 chr1 35480373 35480489 -246713175 + L2 LINE L2 2870 3010 -262 2428 84 0 0 chr1 35480489 35480797 -246712867 - AluSx SINE Alu -4 308 1 379 261 125 28 chr1 35480797 35480856 -246712808 + L2 LINE L2 3010 3062 -210 232 204 20 0 chr1 35481387 35481436 -246712228 - L2 LINE L2 -690 2624 2575 356 315 238 9 chr1 35481502 35481692 -246711972 - L2 LINE L2 -950 2364 2219 1037 82 0 15 chr1 35481692 35481827 -246711837 + FLAM_C SINE Alu 1 133 0 356 315 238 9 chr1 35481827 35481976 -246711688 - L2 LINE L2 -1095 2219 1947 244 211 70 0 chr1 35482312 35482369 -246711295 + L2 LINE L2 2214 2274 -1040 1999 111 40 0 chr1 35482781 35483078 -246710586 - AluSq SINE Alu -4 309 1 2145 92 7 0 chr1 35483334 35483647 -246710017 - AluSx SINE Alu 0 315 1 185 340 117 31 chr1 35483792 35484048 -246709616 + L2 LINE L2 2933 3210 -62 862 270 14 10 chr1 35484436 35484685 -246708979 + MIR SINE MIR 15 262 0 239 139 0 0 chr1 35484691 35484727 -246708937 + MIR SINE MIR 40 75 -133 236 287 32 11 chr1 35484942 35485036 -246708628 + L3b LINE CR1 1289 1384 -199 272 173 210 0 chr1 35485428 35485509 -246708155 - L2 LINE L2 -3 3269 3172 1968 36 109 0 chr1 35485511 35485758 -246707906 + AluY SINE Alu 6 279 -32 403 304 8 8 chr1 35485833 35485958 -246707706 + L2 LINE L2 3142 3266 -47 2016 134 3 3 chr1 35486002 35486307 -246707357 - AluSx SINE Alu -7 305 1 255 285 6 50 chr1 35487122 35487301 -246706363 + C-rich Low_complexity Low_complexity 3 173 0 22 0 0 0 chr1 35487477 35487499 -246706165 + GC_rich Low_complexity Low_complexity 1 22 0 1722 149 14 7 chr1 35488240 35488529 -246705135 - AluJb SINE Alu -21 291 1 1452 150 12 78 chr1 35488529 35488728 -246704936 - AluJb SINE Alu 0 312 142 225 0 0 0 chr1 35488728 35488753 -246704911 + (TG)n Simple_repeat Simple_repeat 2 26 0 1452 150 12 78 chr1 35488753 35488887 -246704777 - AluJb SINE Alu -170 142 1 248 284 84 0 chr1 35489117 35489212 -246704452 - MIR3 SINE MIR -22 186 84 1440 288 174 28 chr1 35489579 35490313 -246703351 + L2 LINE L2 1616 2523 -791 2231 91 7 0 chr1 35490313 35490610 -246703054 - AluSg SINE Alu -11 299 1 1440 288 174 28 chr1 35490610 35490832 -246702832 + L2 LINE L2 2523 2711 -603 181 320 107 10 chr1 35490908 35491011 -246702653 + L2 LINE L2 2969 3081 -191 259 335 94 21 chr1 35491380 35491571 -246702093 - L2 LINE L2 -550 2764 2560 2311 100 0 0 chr1 35491729 35492038 -246701626 - AluSg SINE Alu -1 309 1 1405 151 43 0 chr1 35492058 35492290 -246701374 - AluJb SINE Alu -64 248 7 1808 175 0 13 chr1 35492298 35492788 -246700876 - AluJb SINE Alu 0 488 3 606 278 61 14 chr1 35493150 35493362 -246700302 - MIR SINE MIR -38 224 3 410 289 0 10 chr1 35494087 35494191 -246699473 - MIR SINE MIR -112 150 48 2313 81 0 3 chr1 35494694 35494992 -246698672 - AluY SINE Alu -14 297 1 1754 140 14 17 chr1 35494995 35495287 -246698377 - AluJo SINE Alu -21 291 1 251 246 159 0 chr1 35495838 35495907 -246697757 + MIR3 SINE MIR 78 157 -51 2340 91 3 0 chr1 35495912 35496220 -246697444 - AluSg SINE Alu 0 310 2 923 128 14 0 chr1 35496411 35496552 -246697112 + AluSg/x SINE Alu 138 280 -30 703 0 11 11 chr1 35496552 35496640 -246697024 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 205 137 20 39 chr1 35497391 35497442 -246696222 + G-rich Low_complexity Low_complexity 3 52 0 24 32 0 0 chr1 35497633 35497664 -246696000 + GC_rich Low_complexity Low_complexity 1 31 0 2007 107 24 0 chr1 35500168 35500458 -246693206 - AluSx SINE Alu -14 298 2 203 138 0 0 chr1 35500935 35500964 -246692700 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 35500994 35501019 -246692645 + AT_rich Low_complexity Low_complexity 1 25 0 225 293 40 0 chr1 35503310 35503385 -246690279 + MIR SINE MIR 36 113 -149 383 244 109 45 chr1 35503482 35503638 -246690026 - MIR SINE MIR -4 258 93 915 109 0 51 chr1 35503754 35503892 -246689772 - FLAM_C SINE Alu -1 132 2 194 300 17 33 chr1 35503894 35503954 -246689710 + MER5B DNA MER1_type 115 173 -5 425 335 68 29 chr1 35504396 35504422 -246689242 + L1ME4a LINE L1 5606 5630 -491 2129 101 10 3 chr1 35504422 35504720 -246688944 - AluSx SINE Alu -12 300 1 425 335 68 29 chr1 35504720 35504974 -246688690 + L1ME4a LINE L1 5630 5897 -224 1087 163 5 15 chr1 35505048 35505244 -246688420 + AluJo SINE Alu 104 297 -15 653 274 46 33 chr1 35505272 35505513 -246688151 + L2 LINE L2 2853 3096 -217 1151 107 0 24 chr1 35505516 35505685 -246687979 - AluSg/x SINE Alu -14 298 134 2251 105 0 6 chr1 35505685 35505999 -246687665 - AluSx SINE Alu 0 312 1 282 288 82 35 chr1 35506007 35506177 -246687487 + L2 LINE L2 3114 3291 -22 795 215 169 20 chr1 35506199 35506244 -246687420 + MER58A DNA MER1_type 1 38 -2382 2281 84 0 10 chr1 35506244 35506555 -246687109 + AluY SINE Alu 2 309 -2 795 215 169 20 chr1 35506555 35506704 -246686960 + MER58A DNA MER1_type 38 224 0 291 313 97 14 chr1 35506856 35507000 -246686664 + L1ME4a LINE L1 5900 6055 -66 2509 56 7 0 chr1 35507028 35507333 -246686331 - AluY SINE Alu -4 307 1 319 193 193 9 chr1 35507521 35507630 -246686034 + MIR SINE MIR 21 149 -113 260 269 62 56 chr1 35507645 35507805 -246685859 - MER5A DNA MER1_type -28 161 1 900 263 148 23 chr1 35509052 35509239 -246684425 + L2 LINE L2 832 994 -2320 1786 157 3 10 chr1 35509239 35509545 -246684119 - AluJb SINE Alu -7 305 2 900 263 148 23 chr1 35509545 35509795 -246683869 + L2 LINE L2 994 1324 -1990 246 276 21 97 chr1 35509823 35509968 -246683696 + MIR SINE MIR 119 252 -10 435 315 34 14 chr1 35510039 35510185 -246683479 - MIR SINE MIR -112 150 2 2312 70 7 0 chr1 35510594 35510892 -246682772 + AluY SINE Alu 1 300 -11 186 311 0 0 chr1 35511431 35511476 -246682188 - MIR SINE MIR -82 126 82 581 236 62 14 chr1 35511554 35511698 -246681966 + MIR SINE MIR 4 154 -108 269 91 303 0 chr1 35511766 35511832 -246681832 - HsTC2 DNA Tc2 -1811 87 2 2210 88 0 16 chr1 35512572 35512877 -246680787 + AluSx SINE Alu 1 300 -12 249 316 37 44 chr1 35513013 35513149 -246680515 + MIR SINE MIR 16 150 -112 349 268 115 32 chr1 35513302 35513459 -246680205 - MER5A DNA MER1_type 0 189 20 252 343 170 18 chr1 35514754 35515200 -246678464 + L2 LINE L2 1801 2314 -1000 964 181 18 0 chr1 35515321 35515492 -246678172 - AluJo SINE Alu -17 295 122 290 316 71 25 chr1 35515504 35515700 -246677964 + L2 LINE L2 2554 2758 -556 271 319 21 97 chr1 35516008 35516089 -246677575 + L2 LINE L2 2949 3035 -237 2088 95 0 3 chr1 35516089 35516403 -246677261 + AluSx SINE Alu 3 315 0 271 319 21 97 chr1 35516403 35516649 -246677015 + L2 LINE L2 3035 3252 -20 2290 95 0 0 chr1 35517670 35517974 -246675690 + AluSx SINE Alu 1 304 -8 1275 161 37 0 chr1 35517999 35518217 -246675447 + AluJb SINE Alu 85 310 -2 1754 160 6 28 chr1 35518304 35518623 -246675041 + AluJo SINE Alu 1 312 0 270 301 99 38 chr1 35518706 35518888 -246674776 + L1ME4a LINE L1 5634 5804 -317 1617 162 19 42 chr1 35518888 35519197 -246674467 + AluJb SINE Alu 1 302 -10 270 301 99 38 chr1 35519197 35519459 -246674205 + L1ME4a LINE L1 5804 6105 -16 596 274 142 9 chr1 35520057 35520269 -246673395 + MIR SINE MIR 9 248 -14 212 261 15 15 chr1 35520524 35520589 -246673075 + L2 LINE L2 3248 3312 -1 818 141 101 7 chr1 35521019 35521168 -246672496 + L1PA16 LINE L1 6003 6165 -1 1929 147 0 0 chr1 35521170 35521462 -246672202 + AluJb SINE Alu 1 292 -20 230 308 194 4 chr1 35521487 35521714 -246671950 + L1ME4a LINE L1 5538 5807 -314 2330 66 3 3 chr1 35521763 35522066 -246671598 + AluY SINE Alu 1 303 -8 240 252 16 79 chr1 35522104 35522231 -246671433 + L1ME4a LINE L1 5965 6083 -38 332 260 96 10 chr1 35522840 35522944 -246670720 + MIR3 SINE MIR 58 170 -38 2383 59 3 0 chr1 35523066 35523356 -246670308 - AluSp SINE Alu -12 301 11 27 29 0 0 chr1 35524078 35524112 -246669552 + AT_rich Low_complexity Low_complexity 1 34 0 468 323 90 73 chr1 35524146 35524668 -246668996 + L2 LINE L2 2546 3093 -179 2162 70 0 0 chr1 35524668 35524941 -246668723 - AluY SINE Alu 0 311 39 468 323 90 73 chr1 35524941 35525121 -246668543 + L2 LINE L2 3093 3268 -4 1830 152 27 3 chr1 35525396 35525510 -246668154 + AluJb SINE Alu 1 111 -201 252 0 0 0 chr1 35525510 35525538 -246668126 + (CA)n Simple_repeat Simple_repeat 1 28 0 1830 152 27 3 chr1 35525538 35525719 -246667945 + AluJb SINE Alu 111 303 -9 852 358 100 22 chr1 35525801 35526354 -246667310 - L2 LINE L2 -459 2855 2346 1797 186 0 0 chr1 35526354 35526650 -246667014 + AluJo SINE Alu 1 296 -16 852 358 100 22 chr1 35526650 35527047 -246666617 - L2 LINE L2 -968 2346 1831 848 195 24 0 chr1 35527605 35527774 -246665890 - MIR SINE MIR 0 262 90 2167 108 10 0 chr1 35527775 35528081 -246665583 + AluSx SINE Alu 1 309 -3 2087 125 0 0 chr1 35528509 35528804 -246664860 + AluSx SINE Alu 3 297 -15 377 277 67 46 chr1 35529248 35529443 -246664221 + L2 LINE L2 3109 3307 -6 1026 212 83 152 chr1 35530850 35531166 -246662498 + L2 LINE L2 1531 1867 -1447 231 59 39 20 chr1 35531166 35531217 -246662447 + (TTTTA)n Simple_repeat Simple_repeat 3 54 0 1026 212 83 152 chr1 35531217 35531334 -246662330 + L2 LINE L2 1867 1991 -1323 2135 116 0 0 chr1 35531334 35531637 -246662027 - AluSx SINE Alu -9 303 1 1026 212 83 152 chr1 35531637 35531924 -246661740 + L2 LINE L2 1991 2202 -1112 2071 123 3 0 chr1 35531925 35532227 -246661437 - AluSx SINE Alu -9 303 1 1169 136 9 47 chr1 35532229 35532269 -246661395 - AluJo SINE Alu -15 297 257 2207 121 45 28 chr1 35532269 35532625 -246661039 - THE1B LTR MaLR -2 362 1 1169 136 9 47 chr1 35532625 35532797 -246660867 - AluJo SINE Alu -55 257 93 714 150 26 0 chr1 35532807 35532920 -246660744 - FLAM_C SINE Alu -17 126 11 1769 257 67 10 chr1 35532923 35533418 -246660246 + L2 LINE L2 2192 2714 -600 759 126 89 7 chr1 35533419 35533554 -246660110 + L1M3 LINE L1 5542 5687 -496 1070 126 0 0 chr1 35533561 35533735 -246659929 - AluSp SINE Alu 0 307 134 1963 130 14 3 chr1 35533735 35534028 -246659636 - AluSq SINE Alu -17 296 1 449 209 23 0 chr1 35534042 35534128 -246659536 + AluJb SINE Alu 210 297 -15 249 159 0 0 chr1 35534129 35534173 -246659491 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 1353 264 107 18 chr1 35534173 35534722 -246658942 + L2 LINE L2 2705 3312 -1 258 258 0 15 chr1 35535010 35535076 -246658588 - MIR SINE MIR -78 184 120 718 170 36 0 chr1 35535076 35535188 -246658476 + FLAM_C SINE Alu 3 118 -25 2115 95 7 0 chr1 35535203 35535487 -246658177 - AluSx SINE Alu -26 286 1 414 278 0 35 chr1 35535489 35535604 -246658060 - MIR SINE MIR -111 151 41 1758 166 3 7 chr1 35535895 35536197 -246657467 - AluJo SINE Alu -11 301 1 224 253 189 0 chr1 35536197 35536292 -246657372 + MIR SINE MIR 122 234 -28 239 340 31 41 chr1 35536298 35536395 -246657269 + L2 LINE L2 3172 3267 -5 239 247 247 31 chr1 35536405 35536502 -246657162 + MIR SINE MIR 20 137 -71 255 239 0 0 chr1 35536966 35537012 -246656652 - MER45 DNA AcHobo -1 1580 1535 1117 140 0 0 chr1 35537109 35537288 -246656376 + AluJb SINE Alu 134 312 0 384 143 26 0 chr1 35537290 35537367 -246656297 - MER63B DNA MER1_type -57 378 300 861 220 0 0 chr1 35537368 35537545 -246656119 + FRAM SINE Alu 1 176 0 288 197 0 0 chr1 35537545 35537611 -246656053 - MER63B DNA MER1_type -147 288 223 953 212 30 35 chr1 35538909 35538978 -246654686 - MER63B DNA MER1_type -827 235 167 2212 90 0 7 chr1 35538978 35539277 -246654387 - AluSq SINE Alu -16 297 1 953 212 30 35 chr1 35539277 35539438 -246654226 - MER63B DNA MER1_type -895 167 6 27 49 0 0 chr1 35539709 35539750 -246653914 + AT_rich Low_complexity Low_complexity 1 41 0 1012 70 0 0 chr1 35539750 35539878 -246653786 - AluSp/q SINE Alu -26 287 160 1715 149 11 0 chr1 35539930 35540205 -246653459 - AluJb SINE Alu -26 286 9 3078 280 82 52 chr1 35540800 35541105 -246652559 - ERVL LTR ERVL -422 5342 5047 2634 13 0 3 chr1 35541105 35541405 -246652259 + AluYa5 SINE Alu 1 299 -12 3078 280 82 52 chr1 35541405 35541635 -246652029 - ERVL LTR ERVL -717 5047 4825 1620 142 49 17 chr1 35541635 35541923 -246651741 + AluJb SINE Alu 1 297 -15 3078 280 82 52 chr1 35541923 35542920 -246650744 - ERVL LTR ERVL -939 4825 3764 1778 149 3 7 chr1 35543099 35543394 -246650270 - AluSx SINE Alu -14 298 5 566 249 203 0 chr1 35543679 35543876 -246649788 - ERVL LTR ERVL -2164 3600 3364 366 287 59 59 chr1 35544029 35544172 -246649492 - ERVL LTR ERVL -2346 3308 3163 2186 97 3 3 chr1 35544172 35544470 -246649194 - AluSp SINE Alu -15 298 1 366 287 59 59 chr1 35544470 35544580 -246649084 - ERVL LTR ERVL -2490 3164 3055 811 165 0 0 chr1 35544606 35544733 -246648931 + AluSq/x SINE Alu 1 127 -185 26 0 0 0 chr1 35544737 35544763 -246648901 + AT_rich Low_complexity Low_complexity 1 26 0 746 325 113 3 chr1 35544788 35545071 -246648593 - ERVL LTR ERVL -2725 3039 2726 237 158 18 35 chr1 35545132 35545189 -246648475 + MLT1J LTR MaLR 100 155 -356 * 303 287 11 23 chr1 35545142 35545229 -246648435 + LTR67 LTR ERVL 114 199 -358 772 142 149 27 chr1 35545424 35545572 -246648092 - AluSg/x SINE Alu -12 298 133 2126 126 0 3 chr1 35545591 35545900 -246647764 - AluSx SINE Alu -4 308 1 726 301 88 0 chr1 35545930 35546179 -246647485 - ERVL LTR ERVL -3172 2592 2322 30 0 0 0 chr1 35546179 35546209 -246647455 + AT_rich Low_complexity Low_complexity 1 30 0 1956 150 0 7 chr1 35546290 35546590 -246647074 - AluSx SINE Alu -14 298 1 1867 142 20 0 chr1 35546590 35546885 -246646779 - AluSx SINE Alu -10 302 1 305 302 52 10 chr1 35547223 35547319 -246646345 + LTR33A LTR ERVL 59 158 -365 301 243 117 29 chr1 35547563 35547666 -246645998 - ERVL LTR ERVL -3692 2072 1961 1986 134 0 3 chr1 35547903 35548202 -246645462 + AluSx SINE Alu 1 298 -14 1934 141 0 14 chr1 35548217 35548514 -246645150 + AluJb SINE Alu 5 297 -15 3525 131 52 49 chr1 35548643 35549253 -246644411 + LTR9 LTR ERV1 1 612 0 711 148 19 0 chr1 35549256 35549364 -246644300 + HUERS-P3 LTR ERV1 4 113 -8806 29811 156 36 36 chr1 35549366 35551233 -246642431 + HUERS-P3 LTR ERV1 266 2133 -5421 2125 125 0 3 chr1 35551233 35551545 -246642119 - AluSq SINE Alu -2 311 1 29811 156 36 36 chr1 35551545 35552179 -246641485 + HUERS-P3 LTR ERV1 2133 2766 -4788 2315 71 0 29 chr1 35552179 35552487 -246641177 - AluY SINE Alu -12 299 1 29811 156 36 36 chr1 35552487 35554948 -246638716 + HUERS-P3 LTR ERV1 2766 5228 -2326 2350 82 0 0 chr1 35554948 35555252 -246638412 - AluY SINE Alu -6 305 2 2196 101 0 7 chr1 35555254 35555561 -246638103 - AluSp SINE Alu -8 305 1 29811 156 36 36 chr1 35555561 35557390 -246636274 + HUERS-P3 LTR ERV1 5229 7084 -470 391 125 18 0 chr1 35557611 35557667 -246635997 + HUERS-P3 LTR ERV1 8059 8115 -804 2421 61 3 0 chr1 35558098 35558395 -246635269 + AluSp SINE Alu 2 299 -14 2024 134 0 0 chr1 35558625 35558930 -246634734 - AluSx SINE Alu -7 305 1 1805 178 118 67 chr1 35559407 35559824 -246633840 - LTR21B LTR ERV1 0 438 1 2028 87 13 55 chr1 35561368 35561679 -246631985 - AluSg SINE Alu -12 298 1 324 0 0 0 chr1 35563041 35563077 -246630587 + (TGG)n Simple_repeat Simple_repeat 3 38 0 254 304 116 0 chr1 35563745 35563857 -246629807 + MIR SINE MIR 137 261 -1 5354 128 52 0 chr1 35563868 35564650 -246629014 + HUERS-P3 LTR ERV1 8096 8918 -1 3649 146 14 56 chr1 35564650 35564777 -246628887 + LTR9 LTR ERV1 1 132 -480 2162 105 0 0 chr1 35564777 35565071 -246628593 - AluSx SINE Alu -18 294 1 3649 146 14 56 chr1 35565071 35565582 -246628082 + LTR9 LTR ERV1 132 612 0 180 0 0 0 chr1 35566339 35566359 -246627305 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 2219 88 0 7 chr1 35566361 35566656 -246627008 - AluY SINE Alu -18 293 1 888 187 0 0 chr1 35566761 35566911 -246626753 + AluJo SINE Alu 1 150 -162 315 301 12 0 chr1 35567022 35567105 -246626559 + L1M4 LINE L1 3674 3757 -2389 1740 166 7 0 chr1 35568009 35568299 -246625365 - AluJb SINE Alu -20 292 1 2056 156 0 3 chr1 35568326 35568646 -246625018 + 7SLRNA srpRNA srpRNA 2 320 0 3900 127 79 22 chr1 35569068 35569968 -246623696 + MER11A LTR ERVK 152 1266 0 2617 93 31 6 chr1 35569980 35570335 -246623329 - THE1B LTR MaLR 0 364 1 1903 144 0 43 chr1 35570625 35570951 -246622713 - AluSx SINE Alu 0 312 1 1704 137 16 42 chr1 35571322 35571494 -246622170 - AluSx SINE Alu -14 298 136 1920 127 13 7 chr1 35571494 35571801 -246621863 - AluSx SINE Alu -3 309 1 1704 137 16 42 chr1 35571801 35571934 -246621730 - AluSx SINE Alu -176 136 1 438 272 27 41 chr1 35573263 35573410 -246620254 + L2 LINE L2 2709 2853 -461 783 182 0 0 chr1 35573411 35573532 -246620132 - MER45A DNA AcHobo -2 176 56 1137 206 8 35 chr1 35573837 35573954 -246619710 - L1MB5 LINE L1 0 6174 6055 1810 170 0 7 chr1 35573954 35574260 -246619404 - AluSx SINE Alu -8 304 1 1137 206 8 35 chr1 35574260 35574399 -246619265 - L1MB5 LINE L1 -119 6055 5925 1180 167 5 0 chr1 35574400 35574598 -246619066 + MLT2B1 LTR ERVL 1 199 -321 2911 78 90 5 chr1 35574620 35575033 -246618631 + LTR7 LTR ERV1 1 448 -2 9960 90 33 18 chr1 35575035 35576482 -246617182 + HERVH LTR ERV1 1 1469 -6244 2090 97 3 32 chr1 35576647 35576955 -246616709 - AluSx SINE Alu -13 299 1 445 315 150 5 chr1 35577007 35577207 -246616457 + MIR SINE MIR 3 231 -31 1529 136 62 0 chr1 35577301 35577544 -246616120 - AluSx SINE Alu -26 286 29 2414 62 0 0 chr1 35577619 35577926 -246615738 + AluY SINE Alu 1 307 -4 300 158 0 0 chr1 35578426 35578483 -246615181 + (CGG)n Simple_repeat Simple_repeat 2 58 0 702 212 0 0 chr1 35579085 35579315 -246614349 + (CAT)n Simple_repeat Simple_repeat 1 230 0 712 194 6 6 chr1 35579344 35579524 -246614140 + (CAT)n Simple_repeat Simple_repeat 1 180 0 209 262 0 0 chr1 35579545 35579587 -246614077 - L2 LINE L2 -11 3261 3220 516 228 23 42 chr1 35579641 35579803 -246613861 + MIR SINE MIR 35 192 -63 252 0 0 0 chr1 35580006 35580034 -246613630 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2009 109 0 11 chr1 35580034 35580317 -246613347 - AluSx SINE Alu -32 280 1 1190 115 0 0 chr1 35580560 35580734 -246612930 + AluSg/x SINE Alu 137 310 -2 1782 166 0 26 chr1 35580913 35581221 -246612443 - AluJo SINE Alu -12 300 1 2155 112 0 0 chr1 35581247 35581551 -246612113 - AluSx SINE Alu -8 304 1 1636 143 21 96 chr1 35581625 35581960 -246611704 + AluJb SINE Alu 1 310 -2 193 359 26 0 chr1 35582158 35582236 -246611428 - MIR SINE MIR -75 133 54 2179 93 6 13 chr1 35582699 35583012 -246610652 + AluSx SINE Alu 1 311 -1 2056 133 0 0 chr1 35583216 35583517 -246610147 - AluSx SINE Alu -11 301 1 946 146 0 0 chr1 35583520 35583698 -246609966 - AluJb SINE Alu 0 315 138 358 318 48 37 chr1 35583848 35584037 -246609627 + L2 LINE L2 2553 2743 -571 1197 98 0 0 chr1 35584042 35584206 -246609458 + AluSg/x SINE Alu 137 300 -12 730 137 0 24 chr1 35584240 35584364 -246609300 + L2 LINE L2 3193 3313 0 338 368 16 28 chr1 35584401 35584583 -246609081 + L2 LINE L2 2883 3062 -210 1557 147 13 76 chr1 35585018 35585174 -246608490 + AluJb SINE Alu 1 129 -183 2053 118 3 3 chr1 35585174 35585470 -246608194 + AluSq SINE Alu 1 296 -17 1557 147 13 76 chr1 35585470 35585627 -246608037 + AluJb SINE Alu 129 294 -18 2176 112 0 0 chr1 35585629 35585923 -246607741 + AluSx SINE Alu 1 294 -18 941 237 50 0 chr1 35586323 35586521 -246607143 - MIR SINE MIR -4 258 51 252 0 0 0 chr1 35586566 35586594 -246607070 + (ATATG)n Simple_repeat Simple_repeat 5 32 0 2161 107 7 0 chr1 35586642 35586950 -246606714 + AluSx SINE Alu 1 310 -2 305 183 0 113 chr1 35586972 35587043 -246606621 - MER2 DNA MER2_type -1 344 282 546 217 0 9 chr1 35587045 35587151 -246606513 - MER8 DNA MER2_type -133 106 2 1171 130 142 170 chr1 35587488 35587889 -246605775 - MLT1B LTR MaLR 0 390 1 273 211 110 46 chr1 35587939 35588048 -246605616 - MER112 DNA MER1_type -139 121 6 23 0 0 0 chr1 35589020 35589043 -246604621 + AT_rich Low_complexity Low_complexity 1 23 0 2184 83 83 0 chr1 35589044 35589358 -246604306 - L1PA14 LINE L1 -17 6144 5805 759 175 65 26 chr1 35589378 35589532 -246604132 - AluJb SINE Alu -7 305 146 1352 122 0 0 chr1 35589632 35589821 -246603843 - AluSc SINE Alu -120 189 1 589 215 8 0 chr1 35589821 35589951 -246603713 - L1M LINE L1 -751 5423 5293 1719 177 198 32 chr1 35589964 35590362 -246603302 - LTR10A LTR ERV1 -61 548 59 2253 76 3 3 chr1 35590362 35590663 -246603001 + AluY SINE Alu 1 301 -10 1719 177 198 32 chr1 35590663 35590734 -246602930 - LTR10A LTR ERV1 -550 59 1 11793 159 13 19 chr1 35590737 35593894 -246599770 - Harlequin LTR ERV1 -4 6645 1807 295 169 197 14 chr1 35593897 35593968 -246599696 + LTR8 LTR ERV1 174 257 -434 3638 74 0 35 chr1 35593968 35594600 -246599064 - Harlequin LTR ERV1 -5178 1718 1063 1297 88 0 11 chr1 35594607 35594788 -246598876 - AluY SINE Alu 0 311 133 1880 97 42 10 chr1 35594788 35595077 -246598587 - AluSc SINE Alu -11 298 1 1715 142 44 9 chr1 35595077 35595416 -246598248 - Harlequin LTR ERV1 -5884 1012 716 944 219 73 18 chr1 35595790 35595846 -246597818 - Harlequin LTR ERV1 -6360 289 238 6264 128 30 21 chr1 35595846 35596844 -246596820 + LTR13 LTR ERVK 1 1007 0 944 219 73 18 chr1 35596844 35597061 -246596603 - Harlequin LTR ERV1 -6411 238 1 1896 182 153 35 chr1 35597070 35597560 -246596104 - LTR10A LTR ERV1 -61 548 1 1396 164 0 0 chr1 35597580 35597818 -246595846 - AluJo SINE Alu -7 305 68 2235 101 16 0 chr1 35597818 35598126 -246595538 + AluSq SINE Alu 1 313 0 438 155 14 0 chr1 35598250 35598321 -246595343 - AluJo SINE Alu -239 73 2 858 150 89 77 chr1 35598322 35598568 -246595096 - L1M4 LINE L1 -858 5288 5040 201 213 0 0 chr1 35598578 35598625 -246595039 + CT-rich Low_complexity Low_complexity 2 48 0 714 163 0 23 chr1 35598635 35598764 -246594900 - FLAM_C SINE Alu 0 143 18 244 184 0 20 chr1 35598771 35598820 -246594844 - L1MC/D LINE L1 -634 5710 5663 991 98 14 0 chr1 35598830 35598973 -246594691 - AluSg/x SINE Alu -33 279 135 1765 162 3 0 chr1 35598976 35599287 -246594377 - AluSx SINE Alu 0 312 1 572 147 0 11 chr1 35599287 35599382 -246594282 - L1MC/D LINE L1 -514 5670 5577 538 185 37 0 chr1 35599385 35599493 -246594171 - LTR47A LTR ERVL -283 169 58 1288 183 35 7 chr1 35599507 35599796 -246593868 - L1M4 LINE L1 -1092 5054 4758 261 0 0 0 chr1 35599813 35599842 -246593822 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1887 95 29 4 chr1 35599844 35600118 -246593546 - AluSq SINE Alu -29 284 4 2280 55 7 3 chr1 35600337 35600628 -246593036 + AluY SINE Alu 4 295 -16 691 212 8 0 chr1 35600718 35600850 -246592814 - FLAM_A SINE Alu 0 133 1 751 240 221 44 chr1 35600997 35601052 -246592612 - LTR50 LTR ERVL -2 793 749 2121 118 0 0 chr1 35601052 35601358 -246592306 - AluSx SINE Alu -6 306 1 751 240 221 44 chr1 35601358 35601388 -246592276 - LTR50 LTR ERVL -46 749 726 2157 84 0 27 chr1 35601388 35601687 -246591977 - AluY SINE Alu -20 291 1 751 240 221 44 chr1 35601687 35601846 -246591818 - LTR50 LTR ERVL -69 726 596 706 189 25 77 chr1 35601846 35601909 -246591755 - MER53 DNA DNA -3 186 121 1970 129 26 0 chr1 35601909 35602211 -246591453 - AluSq SINE Alu -3 310 1 706 189 25 77 chr1 35602211 35602343 -246591321 - MER53 DNA DNA -68 121 1 751 240 221 44 chr1 35602343 35602689 -246590975 - LTR50 LTR ERVL -199 596 1 1603 176 10 0 chr1 35602825 35603121 -246590543 + AluJo SINE Alu 1 299 -13 2363 68 0 0 chr1 35603146 35603440 -246590224 - AluY SINE Alu -17 294 1 1955 163 11 68 chr1 35603787 35604156 -246589508 + MER66B LTR ERV1 1 348 -138 489 207 11 0 chr1 35604256 35604343 -246589321 - AluJ/FLAM SINE Alu -223 89 2 741 216 162 19 chr1 35604381 35604457 -246589207 - MLT2B1 LTR ERVL -2 518 454 3923 160 64 13 chr1 35604457 35605149 -246588515 + LTR8A LTR ERV1 1 727 0 741 216 162 19 chr1 35605149 35605306 -246588358 - MLT2B1 LTR ERVL -66 454 242 2311 80 3 0 chr1 35605306 35605606 -246588058 + AluSp SINE Alu 3 303 -10 741 216 162 19 chr1 35605606 35605630 -246588034 - MLT2B1 LTR ERVL -278 242 223 1027 196 88 0 chr1 35605655 35605859 -246587805 + AluJo SINE Alu 10 231 -81 3104 90 8 153 chr1 35605861 35606577 -246587087 - MER4B LTR ERV1 0 779 1 416 158 0 49 chr1 35606577 35606659 -246587005 + AluJo SINE Alu 230 307 -5 2791 75 122 5 chr1 35606669 35607070 -246586594 - LTR7 LTR ERV1 -2 448 1 2375 98 53 13 chr1 35607070 35607447 -246586217 - HERVH LTR ERV1 0 7713 7322 1513 101 18 14 chr1 35607445 35607664 -246586000 - HERVH LTR ERV1 -1894 5819 5600 * 4510 134 1 1 chr1 35607665 35608327 -246585337 - HERVH LTR ERV1 -2564 5149 4488 3443 109 4 6 chr1 35608329 35608832 -246584832 - HERVH LTR ERV1 -3720 3993 3492 930 128 20 0 chr1 35608822 35608970 -246584694 - HERVH LTR ERV1 -4423 3290 3140 * 2396 144 9 16 chr1 35608964 35609394 -246584270 - HERVH LTR ERV1 -4726 2987 2561 599 130 11 11 chr1 35609395 35609487 -246584177 - AluSg/x SINE Alu -144 166 75 616 296 61 44 chr1 35609545 35609839 -246583825 + MLT1K LTR MaLR 27 325 -263 1705 150 0 46 chr1 35609985 35610311 -246583353 - AluSx SINE Alu -1 311 1 232 227 0 0 chr1 35610315 35610359 -246583305 + MLT1L LTR MaLR 569 612 -3 262 359 45 51 chr1 35610367 35610523 -246583141 + L2 LINE L2 3098 3252 -20 2225 80 0 35 chr1 35610588 35610901 -246582763 + AluSx SINE Alu 1 302 -10 1441 148 4 49 chr1 35610974 35611238 -246582426 - AluJb SINE Alu -17 295 44 861 134 40 20 chr1 35612095 35612244 -246581420 - FRAM SINE Alu -25 151 1 376 272 179 23 chr1 35612244 35612417 -246581247 - MIR SINE MIR -56 206 7 1147 163 43 8 chr1 35613832 35613870 -246579794 + L1M4 LINE L1 5165 5200 -978 2279 98 0 0 chr1 35613870 35614175 -246579489 + AluSc SINE Alu 1 305 -4 1147 163 43 8 chr1 35614175 35614441 -246579223 + L1M4 LINE L1 5200 5474 -704 1738 127 0 98 chr1 35614588 35614934 -246578730 + AluSx SINE Alu 1 312 0 1213 73 0 12 chr1 35615025 35615189 -246578475 + L1PA5 LINE L1 5993 6154 0 764 163 0 59 chr1 35615263 35615398 -246578266 + FLAM_A SINE Alu 1 127 -6 1717 160 3 14 chr1 35615412 35615706 -246577958 + AluJo SINE Alu 11 301 -11 405 286 90 51 chr1 35615741 35615919 -246577745 - L2 LINE L2 -50 3222 3038 2994 98 26 5 chr1 35616025 35616442 -246577222 + MSTA LTR MaLR 3 428 0 2669 180 4 32 chr1 35617762 35618261 -246575403 - MER66B LTR ERV1 0 486 2 495 268 8 0 chr1 35618731 35618854 -246574810 + MER5C DNA MER1_type 1 124 -200 180 222 206 32 chr1 35618968 35619031 -246574633 + MER5C DNA MER1_type 248 321 -3 1837 159 13 0 chr1 35619039 35619347 -246574317 + AluSx SINE Alu 1 312 0 2183 77 11 0 chr1 35619435 35619721 -246573943 + AluSp SINE Alu 1 289 -24 841 136 8 0 chr1 35620033 35620158 -246573506 + MER20 DNA MER1_type 94 219 0 2162 95 0 3 chr1 35620246 35620576 -246573088 - AluSx SINE Alu 0 329 1 2493 65 0 0 chr1 35622059 35622368 -246571296 - AluY SINE Alu -2 309 1 2213 80 27 0 chr1 35623776 35624075 -246569589 - AluSq SINE Alu -6 307 1 261 277 181 0 chr1 35624186 35624280 -246569384 - L2 LINE L2 -6 3307 3197 2045 89 14 7 chr1 35624623 35624916 -246568748 - AluSc SINE Alu -10 299 5 1560 91 228 0 chr1 35624958 35625199 -246568465 + AluSx SINE Alu 1 296 -6 22 56 0 0 chr1 35625218 35625254 -246568410 + AT_rich Low_complexity Low_complexity 1 36 0 1977 110 65 3 chr1 35625400 35625692 -246567972 + AluSq SINE Alu 2 311 -2 273 211 53 13 chr1 35625711 35625787 -246567877 - MIR3 SINE MIR 0 208 130 26 50 0 0 chr1 35626206 35626246 -246567418 + AT_rich Low_complexity Low_complexity 1 40 0 2012 136 10 0 chr1 35626275 35626576 -246567088 - AluSx SINE Alu -8 304 1 1044 158 0 0 chr1 35627213 35627371 -246566293 + FRAM SINE Alu 1 155 -21 24 0 0 0 chr1 35628231 35628255 -246565409 + AT_rich Low_complexity Low_complexity 1 24 0 822 154 99 33 chr1 35628542 35628724 -246564940 + MER58A DNA MER1_type 27 220 -4 22 0 0 0 chr1 35629044 35629066 -246564598 + AT_rich Low_complexity Low_complexity 1 22 0 307 222 0 0 chr1 35629360 35629414 -246564250 + MER5A DNA MER1_type 1 54 -135 195 107 0 0 chr1 35629414 35629442 -246564222 + MER5A DNA MER1_type 156 183 -6 1854 145 3 3 chr1 35629444 35629741 -246563923 + AluJb SINE Alu 1 297 -15 2211 100 0 7 chr1 35629741 35630050 -246563614 + AluSx SINE Alu 1 307 -5 2045 137 0 0 chr1 35630063 35630370 -246563294 - AluSx SINE Alu -5 307 1 1908 163 51 108 chr1 35630966 35631246 -246562418 + L1MB5 LINE L1 5660 5896 -278 2326 62 7 3 chr1 35631246 35631550 -246562114 + AluY SINE Alu 1 305 -6 1908 163 51 108 chr1 35631550 35631814 -246561850 + L1MB5 LINE L1 5896 6173 -1 22 0 0 0 chr1 35631968 35631990 -246561674 + GC_rich Low_complexity Low_complexity 1 22 0 25 95 0 0 chr1 35632138 35632212 -246561452 + GC_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr1 35632260 35632282 -246561382 + GC_rich Low_complexity Low_complexity 1 22 0 233 109 22 0 chr1 35632310 35632356 -246561308 + (CGG)n Simple_repeat Simple_repeat 2 48 0 959 230 55 48 chr1 35632443 35632752 -246560912 - L1MC4a LINE L1 -339 7469 7159 872 176 0 0 chr1 35632761 35632909 -246560755 - AluJb SINE Alu -19 293 146 363 185 0 4 chr1 35632910 35632990 -246560674 - Alu SINE Alu -249 53 1 434 169 113 40 chr1 35633004 35633128 -246560536 - FLAM_A SINE Alu 0 133 1 1620 206 30 24 chr1 35633131 35633154 -246560510 - L1MC4 LINE L1 -861 7032 7011 2151 117 0 0 chr1 35633154 35633462 -246560202 - AluSx SINE Alu -4 308 1 1620 206 30 24 chr1 35633462 35633834 -246559830 - L1MC4 LINE L1 -882 7011 6518 365 209 112 37 chr1 35633914 35633988 -246559676 - L1ME4a LINE L1 -49 6072 6005 2301 77 0 0 chr1 35633988 35634287 -246559377 + AluY SINE Alu 1 299 -12 365 209 112 37 chr1 35634287 35634399 -246559265 - L1ME4a LINE L1 -116 6005 5872 774 182 40 17 chr1 35634409 35634585 -246559079 + MER58 DNA MER1_type 20 199 -2221 766 212 123 24 chr1 35634629 35634922 -246558742 + MLT1G LTR MaLR 269 590 0 913 117 0 0 chr1 35634959 35635087 -246558577 + AluSq/x SINE Alu 18 145 -168 2392 64 0 0 chr1 35635185 35635481 -246558183 + AluY SINE Alu 1 296 -15 266 73 0 0 chr1 35635662 35635703 -246557961 - Alu SINE Alu -3 299 259 865 150 0 0 chr1 35635882 35636009 -246557655 + FLAM_C SINE Alu 2 128 -5 2432 59 7 0 chr1 35636030 35636334 -246557330 + AluY SINE Alu 1 306 -5 2575 91 8 39 chr1 35636347 35636733 -246556931 + THE1C LTR MaLR 1 374 -1 308 83 0 0 chr1 35636741 35636789 -246556875 + Alu SINE Alu 254 301 -1 842 189 115 77 chr1 35636789 35637049 -246556615 + L1ME1 LINE L1 5321 5590 -576 222 62 0 0 chr1 35637056 35637088 -246556576 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1423 191 11 7 chr1 35637088 35637365 -246556299 - AluJb SINE Alu -34 278 1 1225 183 154 19 chr1 35637366 35637871 -246555793 + L1ME1 LINE L1 5584 5906 -260 1210 194 17 24 chr1 35637872 35638163 -246555501 - MER33 DNA MER1_type -46 278 1 2238 100 0 0 chr1 35638253 35638553 -246555111 + AluSq SINE Alu 1 300 -13 2107 111 20 0 chr1 35638777 35639074 -246554590 - AluSq SINE Alu -10 303 1 1989 141 3 3 chr1 35639232 35639544 -246554120 - AluSx SINE Alu 0 312 1 202 341 47 71 chr1 35639577 35639747 -246553917 - L2 LINE L2 -56 3216 3051 2339 81 0 0 chr1 35639807 35640103 -246553561 + AluSc SINE Alu 1 296 -13 1138 139 0 6 chr1 35640839 35641011 -246552653 - AluSp SINE Alu -9 304 134 1416 96 0 5 chr1 35641011 35641199 -246552465 - AluSx SINE Alu -125 187 1 219 292 0 0 chr1 35641315 35641363 -246552301 - L2 LINE L2 -16 3297 3250 202 232 18 18 chr1 35641555 35641611 -246552053 + L2 LINE L2 3216 3271 -1 251 270 139 9 chr1 35641839 35641954 -246551710 + LTR16A LTR ERVL 321 450 0 2416 54 0 3 chr1 35642077 35642372 -246551292 - AluY SINE Alu -17 294 1 209 56 0 28 chr1 35642425 35642461 -246551203 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 936 75 0 0 chr1 35642461 35642581 -246551083 - AluY SINE Alu -191 120 1 653 188 8 17 chr1 35642622 35642739 -246550925 + FLAM_A SINE Alu 1 116 -17 1939 144 7 13 chr1 35642819 35643125 -246550539 + AluSx SINE Alu 1 304 -8 844 293 68 79 chr1 35643128 35643182 -246550482 + L1MC/D LINE L1 4735 4788 -1358 1646 164 134 33 chr1 35643182 35643571 -246550093 + MSTC LTR MaLR 1 428 0 844 293 68 79 chr1 35643571 35643633 -246550031 + L1MC/D LINE L1 4788 4849 -1297 1016 195 0 0 chr1 35643633 35643802 -246549862 - FAM SINE Alu -6 169 1 844 293 68 79 chr1 35643802 35644216 -246549448 + L1MC/D LINE L1 4849 5260 -886 319 279 37 48 chr1 35644218 35644247 -246549417 + L1MC/D LINE L1 5291 5319 -802 2185 103 0 0 chr1 35644247 35644547 -246549117 + AluSx SINE Alu 1 300 -12 186 43 0 0 chr1 35644551 35644574 -246549090 + (CAA)n Simple_repeat Simple_repeat 2 24 0 319 279 37 48 chr1 35644574 35644762 -246548902 + L1MC/D LINE L1 5322 5504 -617 2082 131 0 3 chr1 35644776 35645089 -246548575 - AluSx SINE Alu 0 312 1 2479 181 21 122 chr1 35645104 35645623 -246548041 + L1ME2 LINE L1 5436 6006 -158 2063 110 33 0 chr1 35645623 35645922 -246547742 + AluSx SINE Alu 1 309 -3 2479 181 21 122 chr1 35645922 35646076 -246547588 + L1ME2 LINE L1 6006 6019 -145 1653 158 3 28 chr1 35646076 35646367 -246547297 + AluJb SINE Alu 1 284 -28 2479 181 21 122 chr1 35646367 35646488 -246547176 + L1ME2 LINE L1 6019 6151 -13 2114 117 0 0 chr1 35646659 35646957 -246546707 + AluSx SINE Alu 15 312 0 607 101 0 0 chr1 35647147 35647226 -246546438 + AluJo SINE Alu 2 80 -232 1168 148 23 23 chr1 35647276 35647326 -246546338 + AluJo SINE Alu 85 134 -178 1589 113 124 19 chr1 35647326 35647591 -246546073 + AluSg SINE Alu 1 293 -17 1168 148 23 23 chr1 35647591 35647757 -246545907 + AluJo SINE Alu 133 301 -11 3250 101 25 138 chr1 35647759 35647901 -246545763 - Tigger3b DNA MER2_type -1797 1232 1076 2316 129 18 3 chr1 35647901 35648233 -246545431 + MER1B DNA MER1_type 1 337 0 3250 101 25 138 chr1 35648233 35648338 -246545326 - Tigger3b DNA MER2_type -1953 1076 961 1748 134 18 4 chr1 35648338 35648615 -246545049 - AluSq SINE Alu -32 281 1 3250 101 25 138 chr1 35648615 35648672 -246544992 - Tigger3b DNA MER2_type -2068 961 899 1976 106 0 3 chr1 35648672 35648954 -246544710 + AluSq SINE Alu 1 281 -32 3250 101 25 138 chr1 35648954 35649157 -246544507 - Tigger3b DNA MER2_type -2130 899 675 2049 107 14 0 chr1 35649157 35649447 -246544217 - AluSx SINE Alu -18 294 1 3250 101 25 138 chr1 35649447 35649551 -246544113 - Tigger3b DNA MER2_type -2354 675 561 2271 53 20 0 chr1 35649551 35649850 -246543814 + AluY SINE Alu 1 305 -6 1658 176 20 0 chr1 35649857 35650159 -246543505 + AluJo SINE Alu 1 308 -4 3250 101 25 138 chr1 35650159 35650279 -246543385 - Tigger3b DNA MER2_type -2324 705 573 887 160 0 7 chr1 35650283 35650433 -246543231 - AluJo SINE Alu -163 149 1 2876 141 105 19 chr1 35650435 35650470 -246543194 - Tigger3b DNA MER2_type -2459 569 538 186 71 0 0 chr1 35650470 35650498 -246543166 + (CA)n Simple_repeat Simple_repeat 2 29 0 2876 141 105 19 chr1 35650498 35650760 -246542904 - Tigger3b DNA MER2_type -2490 538 300 2157 99 3 0 chr1 35650760 35651052 -246542612 - AluSg SINE Alu -17 293 1 2876 141 105 19 chr1 35651052 35651277 -246542387 - Tigger3b DNA MER2_type -2728 300 1 1670 158 54 3 chr1 35651448 35651745 -246541919 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 35651848 35651870 -246541794 + AT_rich Low_complexity Low_complexity 1 22 0 655 246 12 47 chr1 35651954 35652125 -246541539 + LTR41 LTR ERVL 1 165 -608 2303 56 3 7 chr1 35652141 35652445 -246541219 - AluY SINE Alu -8 303 1 1862 104 97 0 chr1 35652448 35652727 -246540937 - AluSq SINE Alu -7 306 1 275 196 6 184 chr1 35652954 35653038 -246540626 + LTR41 LTR ERVL 585 628 -145 1285 167 119 11 chr1 35653038 35653307 -246540357 - AluSg1 SINE Alu -11 298 1 275 196 6 184 chr1 35653307 35653385 -246540279 + LTR41 LTR ERVL 628 718 -55 * 1190 194 73 13 chr1 35653373 35653651 -246540013 + MLT2D LTR ERVL 76 364 -50 2203 88 3 0 chr1 35653652 35653964 -246539700 + AluSq SINE Alu 1 313 0 2163 89 17 0 chr1 35654007 35654300 -246539364 + AluSc SINE Alu 1 298 -11 2016 109 3 7 chr1 35654339 35654622 -246539042 - AluSx SINE Alu -30 282 1 1045 146 35 0 chr1 35654624 35654795 -246538869 - AluSq SINE Alu -6 307 131 252 227 53 0 chr1 35654798 35654873 -246538791 + LTR50 LTR ERVL 715 793 -2 253 268 0 0 chr1 35655051 35655107 -246538557 - L2 LINE L2 -225 3047 2992 2252 100 3 0 chr1 35655112 35655423 -246538241 + AluSx SINE Alu 1 312 0 2109 122 0 0 chr1 35655465 35655768 -246537896 - AluSx SINE Alu -1 311 9 2134 75 48 7 chr1 35655774 35656068 -246537596 - AluSx SINE Alu -6 306 1 1137 119 0 17 chr1 35656110 35656267 -246537397 + AluSq SINE Alu 137 292 -21 622 191 7 0 chr1 35656267 35656403 -246537261 + L1MA4 LINE L1 6160 6296 -4 1137 119 0 17 chr1 35656403 35656421 -246537243 + AluSq SINE Alu 292 309 -4 722 248 64 54 chr1 35656792 35656834 -246536830 - MLT1I LTR MaLR -26 383 343 1536 194 8 79 chr1 35656834 35657111 -246536553 - MER58B DNA MER1_type -2079 341 95 1667 169 7 10 chr1 35657111 35657418 -246536246 + AluJb SINE Alu 1 306 -6 1536 194 8 79 chr1 35657418 35657507 -246536157 - MER58B DNA MER1_type -2325 95 1 722 248 64 54 chr1 35657507 35657823 -246535841 - MLT1I LTR MaLR -66 343 51 347 200 250 10 chr1 35657927 35658027 -246535637 + MER5C DNA MER1_type 1 124 -200 850 137 0 0 chr1 35658179 35658310 -246535354 + AluJo/FLAM SINE Alu 1 131 -181 1679 151 6 35 chr1 35658312 35658455 -246535209 + AluJb SINE Alu 1 147 -165 2254 77 7 0 chr1 35658455 35658752 -246534912 + AluY SINE Alu 1 299 -12 1679 151 6 35 chr1 35658752 35658920 -246534744 + AluJb SINE Alu 147 303 -9 2086 112 0 3 chr1 35659051 35659346 -246534318 + AluSx SINE Alu 1 294 -18 376 338 82 15 chr1 35659374 35659575 -246534089 + L1MDa LINE L1 1267 1789 -4682 * 423 283 80 76 chr1 35659555 35659583 -246534081 + HAL1 LINE L1 1309 1335 -1172 1928 155 0 3 chr1 35659583 35659887 -246533777 + AluJb SINE Alu 1 303 -9 423 283 80 76 chr1 35659887 35659992 -246533672 + HAL1 LINE L1 1335 1438 -1069 1998 98 0 76 chr1 35659992 35660320 -246533344 + AluSq SINE Alu 1 303 -10 423 283 80 76 chr1 35660320 35660422 -246533242 + HAL1 LINE L1 1438 1546 -961 274 330 0 0 chr1 35660523 35660620 -246533044 + HAL1 LINE L1 1570 1666 -841 2226 106 0 0 chr1 35660760 35661072 -246532592 - AluSx SINE Alu 0 312 1 2134 121 0 3 chr1 35661119 35661432 -246532232 + AluSx SINE Alu 1 312 0 2237 115 0 0 chr1 35661505 35661810 -246531854 - AluSq SINE Alu -8 305 1 2415 74 0 0 chr1 35662012 35662323 -246531341 + AluY SINE Alu 1 311 0 2163 95 3 3 chr1 35662413 35662707 -246530957 - AluSg SINE Alu -16 294 1 1695 144 53 7 chr1 35662710 35662995 -246530669 - AluJo SINE Alu -14 298 1 821 160 15 0 chr1 35663122 35663253 -246530411 + AluJo/FLAM SINE Alu 1 133 -169 2065 125 0 0 chr1 35663253 35663558 -246530106 + AluSq SINE Alu 1 305 -8 1994 74 102 0 chr1 35663675 35663959 -246529705 + AluSp SINE Alu 1 313 0 1711 86 4 39 chr1 35664067 35664324 -246529340 + AluSp SINE Alu 58 305 -8 280 301 0 124 chr1 35664391 35664468 -246529196 - MLT1-int LTR MaLR -489 882 797 1621 141 65 31 chr1 35664468 35664758 -246528906 - AluJb SINE Alu -7 305 6 280 301 0 124 chr1 35664758 35664889 -246528775 - MLT1-int LTR MaLR -574 797 700 1150 135 60 10 chr1 35664907 35665107 -246528557 - AluJo SINE Alu -102 210 1 22 0 0 0 chr1 35665178 35665200 -246528464 + AT_rich Low_complexity Low_complexity 1 22 0 869 129 8 8 chr1 35665207 35665339 -246528325 - FLAM_C SINE Alu -11 132 1 761 249 21 5 chr1 35665517 35665706 -246527958 - MLT1-int LTR MaLR -764 607 416 2114 110 0 0 chr1 35665892 35666183 -246527481 - AluSx SINE Alu -19 293 3 311 213 234 0 chr1 35666215 35666309 -246527355 - MLT1-int LTR MaLR -1614 121 6 1678 146 45 3 chr1 35666349 35666636 -246527028 + AluJo SINE Alu 1 299 -13 1621 206 60 23 chr1 35666690 35667190 -246526474 + MLT1G LTR MaLR 10 590 0 481 315 133 30 chr1 35667190 35667398 -246526266 + L2 LINE L2 1759 1944 -1370 1547 195 0 13 chr1 35667398 35667706 -246525958 - AluJo SINE Alu -6 306 3 481 315 133 30 chr1 35667706 35667925 -246525739 + L2 LINE L2 1944 2230 -1084 773 123 0 0 chr1 35667932 35668046 -246525618 - AluSg/x SINE Alu 0 309 196 28 0 0 0 chr1 35668050 35668078 -246525586 + AT_rich Low_complexity Low_complexity 1 28 0 552 289 209 44 chr1 35668078 35668874 -246524790 + L2 LINE L2 2376 3286 -27 2259 91 7 0 chr1 35668890 35669198 -246524466 + AluSg SINE Alu 1 310 0 2174 113 0 0 chr1 35669397 35669707 -246523957 - AluSg SINE Alu 0 310 1 27 49 0 0 chr1 35671013 35671054 -246522610 + GC_rich Low_complexity Low_complexity 1 41 0 26 88 0 0 chr1 35671066 35671134 -246522530 + GC_rich Low_complexity Low_complexity 1 68 0 37 39 0 0 chr1 35671299 35671350 -246522314 + GC_rich Low_complexity Low_complexity 1 51 0 31 58 0 0 chr1 35671477 35671529 -246522135 + GC_rich Low_complexity Low_complexity 1 52 0 205 174 64 156 chr1 35671952 35672061 -246521603 - MIR SINE MIR -51 211 113 677 230 138 30 chr1 35672705 35673018 -246520646 + L2 LINE L2 2720 3057 -256 1154 154 93 125 chr1 35673063 35673439 -246520225 - MLT1A1 LTR MaLR 0 365 2 363 167 0 0 chr1 35673457 35673511 -246520153 + Tigger5 DNA MER2_type 1 54 -2269 586 156 0 0 chr1 35673519 35673609 -246520055 + Tigger5 DNA MER2_type 2234 2323 0 1794 101 10 78 chr1 35673805 35674113 -246519551 + AluSg SINE Alu 1 287 -23 2284 74 0 32 chr1 35674607 35674917 -246518747 - AluSq SINE Alu -13 300 1 1303 201 27 24 chr1 35674917 35675211 -246518453 - L1MB7 LINE L1 -21 6163 5869 2318 72 0 0 chr1 35675215 35675506 -246518158 - AluY SINE Alu -18 293 3 846 195 19 0 chr1 35675508 35675667 -246517997 - AluJb SINE Alu -16 296 135 2250 174 2 29 chr1 35675667 35675706 -246517958 - L1MB7 LINE L1 -312 5872 5833 2197 104 43 43 chr1 35675706 35675948 -246517716 - MER7A DNA MER2_type -2692 346 105 1886 129 4 0 chr1 35675948 35676228 -246517436 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr1 35676232 35676255 -246517409 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2197 104 43 43 chr1 35676255 35676353 -246517311 - MER7A DNA MER2_type -2935 103 3 2250 174 2 29 chr1 35676353 35676728 -246516936 - L1MB7 LINE L1 -351 5833 5469 211 234 0 0 chr1 35676735 35676782 -246516882 + A-rich Low_complexity Low_complexity 1 47 0 701 124 9 0 chr1 35676803 35676908 -246516756 - L1MB7 LINE L1 -711 5469 5364 394 206 61 53 chr1 35676934 35677065 -246516599 - MIR SINE MIR -65 197 66 506 340 20 98 chr1 35677138 35677638 -246516026 + L2 LINE L2 2807 3267 -5 2110 120 0 0 chr1 35677703 35678004 -246515660 + AluSx SINE Alu 10 310 -2 752 202 77 18 chr1 35678016 35678184 -246515480 + AluJb SINE Alu 122 299 -13 1958 146 0 7 chr1 35678434 35678736 -246514928 - AluJb SINE Alu -12 300 1 1042 133 0 46 chr1 35678881 35679054 -246514610 - FRAM SINE Alu -1 165 1 433 125 0 0 chr1 35679116 35679188 -246514476 + Alu SINE Alu 240 311 -1 848 128 0 47 chr1 35679228 35679377 -246514287 + AluJb SINE Alu 171 312 0 2221 106 0 3 chr1 35679384 35679695 -246513969 + AluSg SINE Alu 1 310 0 2090 108 3 0 chr1 35679856 35680153 -246513511 - AluSx SINE Alu -1 311 14 457 232 16 56 chr1 35680273 35680398 -246513266 - MIR SINE MIR 0 262 143 251 125 0 0 chr1 35680398 35680438 -246513226 - MSTA LTR MaLR 0 428 389 1812 138 11 0 chr1 35680443 35680741 -246512923 + AluSg SINE Alu 1 301 0 2147 105 7 0 chr1 35680745 35681040 -246512624 + AluSq SINE Alu 2 298 -15 611 219 7 58 chr1 35681138 35681293 -246512371 + FRAM SINE Alu 23 169 -7 237 264 27 55 chr1 35681462 35681572 -246512092 - MLT2F LTR ERVL -519 144 38 * 250 194 56 56 chr1 35681504 35681576 -246512088 - MLT1J LTR MaLR -341 170 99 860 101 34 0 chr1 35681609 35681728 -246511936 + FLAM_C SINE Alu 2 124 -9 1766 162 6 32 chr1 35681864 35682178 -246511486 + AluJb SINE Alu 1 306 -6 2422 70 7 0 chr1 35682209 35682507 -246511157 + AluSq SINE Alu 1 300 -13 1581 164 90 0 chr1 35682696 35682964 -246510700 + AluJb SINE Alu 1 292 -20 2063 117 21 0 chr1 35682966 35683256 -246510408 + AluSp SINE Alu 2 297 -16 651 214 8 0 chr1 35683278 35683404 -246510260 - FLAM_C SINE Alu -5 128 2 1858 177 7 0 chr1 35683616 35683904 -246509760 + AluJb SINE Alu 3 292 -20 2129 121 0 19 chr1 35683910 35684225 -246509439 + AluSx SINE Alu 1 309 -3 24 77 0 0 chr1 35684298 35684350 -246509314 + AT_rich Low_complexity Low_complexity 1 52 0 201 121 73 65 chr1 35684392 35684516 -246509148 + (TTATA)n Simple_repeat Simple_repeat 2 126 0 2193 125 0 0 chr1 35684597 35684892 -246508772 - AluSx SINE Alu -17 295 1 21 36 0 0 chr1 35684893 35684921 -246508743 + AT_rich Low_complexity Low_complexity 1 28 0 2494 76 3 0 chr1 35685137 35685438 -246508226 + AluSp SINE Alu 1 302 -11 2168 120 7 0 chr1 35685450 35685751 -246507913 + AluSx SINE Alu 1 303 -9 1862 99 80 0 chr1 35685993 35686311 -246507353 - AluSx SINE Alu 0 339 1 348 336 16 8 chr1 35686433 35686558 -246507106 - MIR3 SINE MIR -40 168 43 202 162 0 0 chr1 35686603 35686640 -246507024 + MIR SINE MIR 127 163 -99 2357 73 0 0 chr1 35686640 35686926 -246506738 + AluY SINE Alu 1 286 -25 208 129 32 81 chr1 35686928 35686990 -246506674 + MIR SINE MIR 146 204 -58 34 0 0 22 chr1 35687420 35687451 -246506213 + AT_rich Low_complexity Low_complexity 1 32 -12 1223 143 58 104 chr1 35687451 35687594 -246506070 - AluJo SINE Alu -18 294 171 2303 108 13 0 chr1 35687594 35687900 -246505764 - AluSg SINE Alu 0 310 1 1223 143 58 104 chr1 35687900 35688064 -246505600 - AluJo SINE Alu -141 171 1 34 0 0 22 chr1 35688064 35688077 -246505587 + AT_rich Low_complexity Low_complexity 32 44 0 2241 115 0 3 chr1 35688128 35688432 -246505232 + AluSc SINE Alu 1 303 -6 2225 108 0 3 chr1 35688552 35688840 -246504824 + AluSx SINE Alu 1 287 -25 31 44 0 0 chr1 35688966 35689011 -246504653 + AT_rich Low_complexity Low_complexity 1 45 0 1608 163 8 12 chr1 35689039 35689296 -246504368 - AluJo SINE Alu -56 256 1 234 203 68 68 chr1 35689333 35689407 -246504257 + L2 LINE L2 2205 2278 -1036 333 0 0 0 chr1 35689971 35690008 -246503656 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 256 54 62 chr1 35690395 35690524 -246503140 - MIR SINE MIR -15 247 120 1771 130 0 0 chr1 35690648 35690901 -246502763 - AluSx SINE Alu -16 296 44 1582 148 165 62 chr1 35690924 35690990 -246502674 + MSTC LTR MaLR 1 59 -369 1960 160 0 3 chr1 35690990 35691296 -246502368 - AluJb SINE Alu -6 306 2 1582 148 165 62 chr1 35691296 35691433 -246502231 + MSTC LTR MaLR 59 180 -248 2578 114 72 8 chr1 35691433 35691835 -246501829 - MSTA LTR MaLR 0 428 1 1582 148 165 62 chr1 35691835 35691969 -246501695 + MSTC LTR MaLR 180 374 -54 303 93 0 173 chr1 35692011 35692086 -246501578 + MSTC LTR MaLR 361 422 -6 2096 137 6 19 chr1 35692144 35692458 -246501206 - AluSx SINE Alu -2 310 1 284 350 81 25 chr1 35692671 35692868 -246500796 + L2 LINE L2 2837 3044 -228 1244 203 36 73 chr1 35692880 35693102 -246500562 - MLT1C LTR MaLR -65 402 200 643 173 55 8 chr1 35693102 35693229 -246500435 - FLAM_C SINE Alu 0 133 1 1244 203 36 73 chr1 35693229 35693419 -246500245 - MLT1C LTR MaLR -267 200 5 1683 149 41 60 chr1 35693473 35693788 -246499876 - AluJo SINE Alu -3 309 1 2295 78 3 17 chr1 35693810 35694103 -246499561 - AluSp SINE Alu -24 289 1 2155 112 3 22 chr1 35694103 35694415 -246499249 - AluSx SINE Alu -5 307 1 600 181 9 0 chr1 35694785 35694890 -246498774 + FRAM SINE Alu 2 107 -69 2136 137 0 31 chr1 35694983 35695305 -246498359 - AluSx SINE Alu 0 312 1 219 311 0 0 chr1 35696372 35696433 -246497231 - L3 LINE CR1 -11 1566 1506 287 176 0 0 chr1 35696529 35696580 -246497084 + MER112 DNA MER1_type 1 51 -209 1699 177 16 29 chr1 35696580 35696890 -246496774 + AluJb SINE Alu 1 306 -6 1680 159 14 17 chr1 35696900 35697190 -246496474 + AluJo SINE Alu 1 289 -23 27 0 0 0 chr1 35697190 35697217 -246496447 + AT_rich Low_complexity Low_complexity 1 27 0 397 280 59 0 chr1 35697287 35697405 -246496259 - L2 LINE L2 0 3313 3189 2518 69 0 3 chr1 35697452 35697755 -246495909 + AluY SINE Alu 1 302 -9 1818 161 0 35 chr1 35697764 35698075 -246495589 + AluJb SINE Alu 1 300 -12 293 182 61 0 chr1 35698090 35698156 -246495508 - L3 LINE CR1 -276 1301 1232 293 268 24 81 chr1 35698234 35698357 -246495307 - L2 LINE L2 -248 3065 2950 289 217 52 52 chr1 35698392 35698507 -246495157 - L2 LINE L2 -459 2855 2741 2213 123 131 8 chr1 35698545 35698926 -246494738 - MSTA LTR MaLR 0 428 1 2506 74 7 0 chr1 35699045 35699354 -246494310 + AluY SINE Alu 1 311 0 2112 108 0 30 chr1 35699394 35699690 -246493974 + AluSg SINE Alu 3 289 -21 4816 203 74 54 chr1 35699690 35699923 -246493741 - L1ME2 LINE L1 -10 6223 5996 2569 51 0 0 chr1 35699923 35700218 -246493446 - AluY SINE Alu -16 295 1 4816 203 74 54 chr1 35700218 35700914 -246492750 - L1ME2 LINE L1 -237 5996 5315 2487 81 3 0 chr1 35700914 35701224 -246492440 - AluY SINE Alu 0 311 1 4816 203 74 54 chr1 35701224 35701312 -246492352 - L1ME2 LINE L1 -918 5315 5230 774 149 0 71 chr1 35701312 35701453 -246492211 - FLAM_C SINE Alu 0 133 3 4816 203 74 54 chr1 35701453 35702409 -246491255 - L1ME2 LINE L1 -1003 5230 4217 2296 107 0 0 chr1 35702409 35702708 -246490956 - AluSx SINE Alu -13 299 1 4816 203 74 54 chr1 35702708 35703098 -246490566 - L1ME2 LINE L1 -2016 4217 3836 2227 112 0 7 chr1 35703114 35703409 -246490255 - AluSx SINE Alu -19 293 1 1257 139 0 0 chr1 35703433 35703606 -246490058 - AluSg/x SINE Alu -9 301 129 2772 201 58 104 chr1 35703606 35703928 -246489736 - L1ME2 LINE L1 -2409 3806 3471 2223 130 0 3 chr1 35703928 35704229 -246489435 - AluSx SINE Alu -12 300 1 2772 201 58 104 chr1 35704229 35704600 -246489064 - L1ME2 LINE L1 -2744 3471 3085 2338 82 0 16 chr1 35704600 35704906 -246488758 - AluSg SINE Alu -9 301 1 2772 201 58 104 chr1 35704906 35704955 -246488709 - L1ME2 LINE L1 -3130 3085 3035 1957 158 3 13 chr1 35704955 35705266 -246488398 - AluJb SINE Alu -4 308 1 2772 201 58 104 chr1 35705266 35705325 -246488339 - L1ME2 LINE L1 -3180 3035 2975 2489 74 0 7 chr1 35705325 35705635 -246488029 + AluSp SINE Alu 1 308 -5 2772 201 58 104 chr1 35705635 35705855 -246487809 - L1ME2 LINE L1 -3240 2975 2841 1703 164 31 10 chr1 35705855 35706148 -246487516 + AluJo SINE Alu 1 299 -13 2772 201 58 104 chr1 35706148 35706305 -246487359 - L1ME2 LINE L1 -3374 2841 2678 1624 193 13 7 chr1 35706306 35706607 -246487057 - AluJo SINE Alu -9 303 1 460 248 28 0 chr1 35706607 35706748 -246486916 - L1ME2 LINE L1 -4094 2302 2158 385 216 32 53 chr1 35706731 35706749 -246486915 - L1ME2 LINE L1 -4185 2211 2194 * 2337 101 7 0 chr1 35706749 35707057 -246486607 - AluSg SINE Alu 0 310 1 385 216 32 53 chr1 35707057 35707109 -246486555 - L1ME2 LINE L1 -4202 2194 2142 1512 205 0 13 chr1 35707109 35707407 -246486257 + AluJo SINE Alu 11 304 -8 385 216 32 53 chr1 35707407 35707525 -246486139 - L1ME2 LINE L1 -4254 2142 2026 841 226 4 113 chr1 35707582 35707821 -246485843 + MER58A DNA MER1_type 11 223 -1 227 274 0 0 chr1 35707897 35707948 -246485716 - L1ME2 LINE L1 -4985 1220 1170 2335 95 7 0 chr1 35707967 35708261 -246485403 - AluSq SINE Alu -17 296 1 979 115 0 0 chr1 35708261 35708391 -246485273 - AluSq/x SINE Alu -176 136 7 2208 117 3 7 chr1 35708399 35708706 -246484958 - AluSx SINE Alu -6 306 1 1129 109 0 0 chr1 35708728 35708875 -246484789 - AluSg/x SINE Alu -13 297 151 688 142 0 0 chr1 35708875 35708981 -246484683 - AluJo/FLAM SINE Alu -205 107 2 659 251 103 92 chr1 35708982 35709116 -246484548 - L1ME2 LINE L1 -5210 1186 1055 1886 151 37 7 chr1 35709116 35709415 -246484249 - AluSx SINE Alu -4 308 1 659 251 103 92 chr1 35709415 35709444 -246484220 - L1ME2 LINE L1 -5341 1055 1028 2104 118 0 14 chr1 35709444 35709603 -246484061 - AluSx SINE Alu -20 292 137 1922 121 36 42 chr1 35709603 35709909 -246483755 - AluSx SINE Alu -8 304 1 2104 118 0 14 chr1 35709909 35710045 -246483619 - AluSx SINE Alu -175 137 1 659 251 103 92 chr1 35710045 35710224 -246483440 - L1ME2 LINE L1 -5368 1028 852 212 0 36 0 chr1 35710224 35710252 -246483412 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 949 191 0 0 chr1 35710253 35710410 -246483254 - FAM SINE Alu -18 157 1 659 251 103 92 chr1 35710410 35710699 -246482965 - L1ME2 LINE L1 -5544 852 541 2309 106 0 6 chr1 35710699 35711011 -246482653 + AluSx SINE Alu 1 310 -2 659 251 103 92 chr1 35711011 35711056 -246482608 - L1ME2 LINE L1 -5855 541 498 503 252 32 41 chr1 35711212 35711430 -246482234 - L1ME2 LINE L1 -6173 223 8 935 150 17 46 chr1 35711612 35711785 -246481879 + AluSg/x SINE Alu 135 302 -8 1961 135 27 17 chr1 35711804 35712101 -246481563 + AluSx SINE Alu 1 300 -12 295 313 0 10 chr1 35712105 35712201 -246481463 + L1ME LINE L1 5491 5585 -536 1241 182 151 23 chr1 35712249 35712600 -246481064 - MSTD LTR MaLR 0 396 1 389 95 93 0 chr1 35712612 35713000 -246480664 + (TA)n Simple_repeat Simple_repeat 1 424 0 2324 96 0 0 chr1 35713000 35713291 -246480373 - AluSq SINE Alu -22 291 1 1837 143 70 17 chr1 35713314 35713670 -246479994 - THE1C LTR MaLR 0 375 1 1572 137 9 0 chr1 35713772 35714005 -246479659 + MER46A DNA MER2_type 1 235 -1 2248 96 24 0 chr1 35714005 35714296 -246479368 + AluSp SINE Alu 1 298 -15 2044 136 7 7 chr1 35714738 35715039 -246478625 + AluJb SINE Alu 1 301 -11 278 217 0 14 chr1 35715125 35715194 -246478470 + L1M4 LINE L1 3806 3873 -2273 1614 174 65 119 chr1 35715195 35715389 -246478275 + MLT1C LTR MaLR 1 204 -263 2044 123 0 45 chr1 35715389 35715697 -246477967 - AluSx SINE Alu -18 294 1 1614 174 65 119 chr1 35715697 35715996 -246477668 + MLT1C LTR MaLR 204 467 0 1908 160 0 25 chr1 35716140 35716459 -246477205 - AluJo SINE Alu -1 311 1 900 275 97 38 chr1 35716461 35716663 -246477001 + L1M4 LINE L1 4027 4215 -1931 1759 149 62 0 chr1 35716663 35716951 -246476713 - AluJo SINE Alu -4 308 3 900 275 97 38 chr1 35716951 35717282 -246476382 + L1M4 LINE L1 4215 4592 -1554 2366 94 0 3 chr1 35717359 35717667 -246475997 + AluSq SINE Alu 1 307 -6 2172 98 7 10 chr1 35717675 35717970 -246475694 + AluSp SINE Alu 1 294 -19 1718 243 156 25 chr1 35718001 35718602 -246475062 - L2 LINE L2 -2 3311 2545 2285 74 21 0 chr1 35718602 35718886 -246474778 + AluSq SINE Alu 1 290 -23 1718 243 156 25 chr1 35718886 35719127 -246474537 - L2 LINE L2 -768 2545 2337 802 144 0 0 chr1 35719138 35719256 -246474408 + FLAM_C SINE Alu 1 118 -15 30 0 0 0 chr1 35719256 35719286 -246474378 + AT_rich Low_complexity Low_complexity 1 30 0 4293 172 49 8 chr1 35719291 35720025 -246473639 + MER21B LTR ERV1 1 764 -99 1287 248 73 65 chr1 35720025 35720341 -246473323 - L2 LINE L2 -1101 2213 1890 2309 110 0 0 chr1 35720341 35720633 -246473031 + AluSx SINE Alu 1 292 -20 1287 248 73 65 chr1 35720633 35720812 -246472852 - L2 LINE L2 -1424 1890 1714 315 148 0 0 chr1 35720817 35720871 -246472793 - Alu SINE Alu 0 302 249 2321 95 0 0 chr1 35720895 35721190 -246472474 - AluSx SINE Alu -17 295 1 2148 117 0 7 chr1 35721192 35721491 -246472173 - AluSx SINE Alu -15 297 1 425 266 70 21 chr1 35721574 35721717 -246471947 - L1MEd LINE L1 -5421 698 549 933 105 0 8 chr1 35721740 35721873 -246471791 - FLAM_C SINE Alu -1 132 1 527 302 44 22 chr1 35721874 35722099 -246471565 - L1MEd LINE L1 -5558 561 332 418 280 114 0 chr1 35722202 35722334 -246471330 - L1MEd LINE L1 -5969 150 4 231 255 70 70 chr1 35722346 35722503 -246471161 + L2 LINE L2 2982 3138 -175 2079 124 0 49 chr1 35722542 35722848 -246470816 - AluSx SINE Alu -21 291 1 1752 149 0 40 chr1 35722857 35723158 -246470506 - AluJo SINE Alu -23 289 1 826 128 30 38 chr1 35723270 35723403 -246470261 + FLAM_C SINE Alu 1 132 -1 2249 79 7 0 chr1 35723463 35723780 -246469884 - AluSc SINE Alu 0 319 1 1522 134 11 65 chr1 35723927 35724128 -246469536 + AluJo SINE Alu 35 218 -94 2268 100 0 22 chr1 35724128 35724447 -246469217 - AluSx SINE Alu 0 312 1 1522 134 11 65 chr1 35724447 35724522 -246469142 + AluJo SINE Alu 218 296 -16 2277 106 0 7 chr1 35725554 35725855 -246467809 + AluSx SINE Alu 6 304 -8 28 48 0 0 chr1 35725874 35725916 -246467748 + AT_rich Low_complexity Low_complexity 1 42 0 2274 100 0 17 chr1 35726120 35726421 -246467243 + AluSg SINE Alu 1 296 -14 202 229 0 0 chr1 35726563 35726611 -246467053 + T-rich Low_complexity Low_complexity 1 48 0 2227 119 6 3 chr1 35726895 35727207 -246466457 - AluSq SINE Alu 0 313 1 572 107 0 0 chr1 35727207 35727291 -246466373 - AluJ/FRAM SINE Alu -10 302 219 2109 118 0 26 chr1 35727291 35727597 -246466067 - AluJb SINE Alu -14 298 1 1796 145 9 50 chr1 35727630 35727727 -246465937 + AluSx SINE Alu 1 100 -212 2572 51 0 3 chr1 35727727 35728023 -246465641 + AluY SINE Alu 1 295 -16 1796 145 9 50 chr1 35728023 35728243 -246465421 + AluSx SINE Alu 100 305 -7 2193 100 42 0 chr1 35728642 35728931 -246464733 - AluSx SINE Alu -8 304 4 1030 253 65 32 chr1 35728940 35729311 -246464353 - L1MC4 LINE L1 -964 7078 6696 1958 121 28 42 chr1 35729381 35729693 -246463971 - AluSx SINE Alu 0 308 1 2304 118 0 13 chr1 35729863 35730176 -246463488 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 35730270 35730291 -246463373 + AT_rich Low_complexity Low_complexity 1 21 0 262 197 0 49 chr1 35730377 35730438 -246463226 - MIR SINE MIR -42 220 163 26 0 0 0 chr1 35730743 35730769 -246462895 + AT_rich Low_complexity Low_complexity 1 26 0 1145 168 34 38 chr1 35730864 35731073 -246462591 + AluJb SINE Alu 86 293 -19 2246 96 0 0 chr1 35731077 35731404 -246462260 + AluSg SINE Alu 2 328 0 2368 83 10 3 chr1 35732833 35733134 -246460530 + AluSq SINE Alu 1 303 -10 208 196 137 0 chr1 35733222 35733273 -246460391 - MIR SINE MIR -96 166 109 2474 70 7 0 chr1 35733687 35733988 -246459676 + AluSp SINE Alu 1 303 -10 2571 61 0 3 chr1 35734180 35734490 -246459174 - AluY SINE Alu -2 309 1 2316 84 3 0 chr1 35734781 35735067 -246458597 - AluSg SINE Alu -23 287 1 2450 69 10 0 chr1 35736508 35736811 -246456853 + AluSx SINE Alu 1 306 -6 2363 106 0 3 chr1 35737061 35737373 -246456291 + AluSx SINE Alu 1 311 -1 7362 166 102 49 chr1 35737595 35739258 -246454406 - MER52A LTR ERV1 0 1755 5 2157 128 7 0 chr1 35739704 35740001 -246453663 + AluSx SINE Alu 1 299 -13 494 176 151 8 chr1 35740261 35740380 -246453284 + MER5B DNA MER1_type 1 136 -42 2485 65 0 0 chr1 35740385 35740675 -246452989 + AluSc SINE Alu 1 290 -19 1731 163 7 30 chr1 35740679 35740974 -246452690 + AluJo SINE Alu 1 288 -24 387 0 0 0 chr1 35740977 35741020 -246452644 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2239 99 17 0 chr1 35741837 35742129 -246451535 - AluSx SINE Alu -15 297 1 2256 96 14 0 chr1 35742185 35742478 -246451186 + AluSq SINE Alu 3 299 -14 1567 162 7 52 chr1 35742630 35742939 -246450725 + AluJo SINE Alu 13 307 -5 2286 75 32 16 chr1 35743279 35743587 -246450077 + AluSq SINE Alu 1 313 0 1941 104 7 7 chr1 35744055 35744325 -246449339 - AluSx SINE Alu -42 270 1 1459 180 70 0 chr1 35744611 35744711 -246448953 + AluJo SINE Alu 1 93 -219 4893 85 19 27 chr1 35744711 35745404 -246448260 + LTR8 LTR ERV1 5 691 0 1459 180 70 0 chr1 35745404 35745575 -246448089 + AluJo SINE Alu 93 291 -21 2270 102 10 0 chr1 35745575 35745869 -246447795 + AluSx SINE Alu 1 297 -15 1272 40 7 0 chr1 35745869 35746019 -246447645 - MER4E LTR ERV1 -615 151 1 609 14 0 0 chr1 35746068 35746138 -246447526 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 1205 74 0 0 chr1 35746144 35746292 -246447372 - AluSg/x SINE Alu -20 290 143 2007 96 0 8 chr1 35746293 35746554 -246447110 + AluSc SINE Alu 34 292 -17 2358 86 3 0 chr1 35746783 35747075 -246446589 - AluSp SINE Alu -20 293 1 2355 98 0 0 chr1 35747149 35747444 -246446220 - AluSq SINE Alu -18 295 1 197 328 0 0 chr1 35747536 35747597 -246446067 - MIR3 SINE MIR -27 181 121 886 152 0 0 chr1 35747874 35748006 -246445658 + FLAM_C SINE Alu 2 133 0 2345 79 0 20 chr1 35748023 35748326 -246445338 + AluY SINE Alu 1 297 -14 1494 170 23 4 chr1 35748419 35748684 -246444980 - AluJb SINE Alu -6 306 37 2246 110 3 0 chr1 35748984 35749284 -246444380 - AluSg1 SINE Alu -8 301 1 370 253 86 52 chr1 35749364 35749538 -246444126 + Charlie8 DNA MER1_type 106 285 -2132 2331 107 3 3 chr1 35749940 35750250 -246443414 - AluSp SINE Alu -3 310 1 23 78 0 0 chr1 35750271 35750322 -246443342 + AT_rich Low_complexity Low_complexity 1 51 0 504 107 40 0 chr1 35750390 35750465 -246443199 + MER51A LTR ERV1 1 78 -556 1868 124 25 44 chr1 35750504 35750819 -246442845 + MER51A LTR ERV1 326 634 0 2126 128 0 3 chr1 35750871 35751168 -246442496 - AluJb SINE Alu -16 296 1 2049 129 0 10 chr1 35751518 35751820 -246441844 - AluSx SINE Alu -13 299 1 1853 160 14 7 chr1 35752127 35752415 -246441249 + AluJo SINE Alu 1 290 -22 2423 91 3 0 chr1 35752758 35753065 -246440599 + AluY SINE Alu 1 308 -3 200 330 110 10 chr1 35753785 35753885 -246439779 + MIR SINE MIR 36 145 -63 3078 124 37 8 chr1 35753886 35754377 -246439287 + L1PA15 LINE L1 5661 6165 0 709 296 182 9 chr1 35754843 35755272 -246438392 + L2 LINE L2 1079 1581 -1733 710 278 179 26 chr1 35755298 35755478 -246438186 + L2 LINE L2 2825 2976 -337 2550 98 11 21 chr1 35755478 35755855 -246437809 + THE1C LTR MaLR 1 373 -2 710 278 179 26 chr1 35755855 35756098 -246437566 + L2 LINE L2 2976 3313 0 2349 105 0 0 chr1 35756251 35756546 -246437118 + AluSx SINE Alu 1 295 -17 2216 104 10 0 chr1 35756581 35756878 -246436786 + AluSx SINE Alu 1 300 -12 1988 114 40 4 chr1 35756901 35757213 -246436451 + AluSx SINE Alu 1 322 0 626 202 0 25 chr1 35757239 35757358 -246436306 + FLAM_A SINE Alu 10 125 -17 1964 128 48 39 chr1 35757434 35757510 -246436154 + MER7A DNA MER2_type 1 75 -2963 2354 93 0 7 chr1 35757510 35757812 -246435852 - AluSq SINE Alu -13 300 1 1964 128 48 39 chr1 35757812 35758071 -246435593 + MER7A DNA MER2_type 75 337 -9 1210 194 49 74 chr1 35758093 35758177 -246435487 + MER58B DNA MER1_type 1 86 -2334 2240 119 3 0 chr1 35758177 35758488 -246435176 - AluSx SINE Alu 0 312 1 1210 194 49 74 chr1 35758488 35758753 -246434911 + MER58B DNA MER1_type 86 341 0 244 329 79 0 chr1 35758827 35758967 -246434697 - MIR3 SINE MIR -28 180 30 1687 159 10 34 chr1 35759394 35759690 -246433974 + AluJo SINE Alu 1 289 -23 2032 84 7 46 chr1 35759702 35759987 -246433677 + AluSp SINE Alu 1 274 -39 2425 84 3 0 chr1 35759994 35760290 -246433374 + AluSx SINE Alu 1 297 -15 1769 158 31 3 chr1 35760302 35760594 -246433070 + AluSg SINE Alu 1 300 -10 1947 164 0 16 chr1 35760768 35761085 -246432579 + AluJo SINE Alu 1 312 0 2385 99 0 0 chr1 35761385 35761689 -246431975 - AluSc SINE Alu -4 305 2 195 69 0 0 chr1 35761712 35761741 -246431923 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 875 94 11 171 chr1 35761812 35761884 -246431780 + AluJo SINE Alu 72 154 -158 1491 139 19 104 chr1 35761884 35762193 -246431471 + AluJo SINE Alu 1 283 -29 198 0 0 0 chr1 35762193 35762215 -246431449 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 875 94 11 171 chr1 35762215 35762322 -246431342 + AluJo SINE Alu 152 223 -89 2068 123 19 7 chr1 35762368 35762676 -246430988 + AluSx SINE Alu 1 312 0 1922 167 3 0 chr1 35762713 35763024 -246430640 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 35763531 35763553 -246430111 + AT_rich Low_complexity Low_complexity 1 22 0 2376 95 0 22 chr1 35763632 35763948 -246429716 - AluSx SINE Alu -3 309 1 1227 165 5 36 chr1 35764052 35764276 -246429388 - AluJb SINE Alu -10 302 86 422 153 0 59 chr1 35764387 35764472 -246429192 + MER66B LTR ERV1 315 394 -92 685 223 7 0 chr1 35764881 35765020 -246428644 + FLAM_C SINE Alu 2 141 -2 2336 103 0 3 chr1 35765854 35766165 -246427499 - AluSg SINE Alu 0 310 1 498 104 26 0 chr1 35766168 35766245 -246427419 - Alu SINE Alu -11 298 220 460 81 0 0 chr1 35766638 35766723 -246426941 + Alu SINE Alu 223 307 0 2330 90 0 13 chr1 35766916 35767215 -246426449 - AluSx SINE Alu -17 295 1 235 277 36 36 chr1 35767246 35767309 -246426355 - MIR3 SINE MIR -6 202 137 3049 161 42 83 chr1 35767309 35768030 -246425634 + LTR8 LTR ERV1 1 691 0 235 277 36 36 chr1 35768030 35768049 -246425615 - MIR3 SINE MIR -70 138 120 2085 104 27 3 chr1 35768050 35768347 -246425317 + AluSq SINE Alu 3 306 -7 2546 177 103 21 chr1 35768363 35768889 -246424775 + MER67B LTR ERV1 93 661 0 1008 210 18 56 chr1 35768892 35768921 -246424743 + L1ME2 LINE L1 5874 5903 -261 2102 107 7 20 chr1 35768921 35769221 -246424443 + AluSg SINE Alu 1 296 -14 1008 210 18 56 chr1 35769221 35769477 -246424187 + L1ME2 LINE L1 5903 6148 -16 1888 143 0 17 chr1 35769480 35769774 -246423890 - AluSx SINE Alu -21 291 3 23 54 0 0 chr1 35769776 35769813 -246423851 + AT_rich Low_complexity Low_complexity 1 37 0 213 39 0 0 chr1 35769867 35769893 -246423771 + (T)n Simple_repeat Simple_repeat 1 26 0 1816 97 4 0 chr1 35769903 35770129 -246423535 - AluSc SINE Alu -82 227 1 690 164 22 0 chr1 35770136 35770270 -246423394 - Charlie1 DNA MER1_type -33 2728 2592 1915 163 0 3 chr1 35770270 35770564 -246423100 + AluSx SINE Alu 1 293 -19 1601 189 0 14 chr1 35770591 35770876 -246422788 + AluJo SINE Alu 1 281 -31 228 242 65 16 chr1 35770880 35770942 -246422722 - Charlie1a DNA MER1_type -1247 208 144 * 369 150 0 50 chr1 35770926 35771006 -246422658 - AluJ/FRAM SINE Alu 0 302 227 654 161 0 73 chr1 35771022 35771159 -246422505 - FRAM SINE Alu -38 138 12 824 195 32 0 chr1 35771159 35771313 -246422351 - Charlie1a DNA MER1_type -1291 164 6 338 235 141 0 chr1 35771318 35771403 -246422261 + L1ME3A LINE L1 6065 6161 -9 1975 141 7 16 chr1 35771413 35771717 -246421947 + AluSx SINE Alu 1 301 -11 550 189 0 0 chr1 35771717 35771812 -246421852 - FAM SINE Alu -30 155 61 456 153 35 80 chr1 35771833 35771875 -246421789 - Charlie1 DNA MER1_type -196 2565 2523 1295 217 17 17 chr1 35771875 35772170 -246421494 + AluJo SINE Alu 3 297 -15 456 153 35 80 chr1 35772170 35772346 -246421318 - Charlie1 DNA MER1_type -238 2523 2309 365 106 0 0 chr1 35772346 35772393 -246421271 + HY3 scRNA scRNA 1 47 -54 965 100 14 14 chr1 35772920 35773060 -246420604 + AluSg/x SINE Alu 154 293 -19 602 146 204 131 chr1 35773060 35773115 -246420549 + Charlie1 DNA MER1_type 2271 2321 -440 649 139 0 0 chr1 35773115 35773216 -246420448 - HY3 scRNA scRNA 0 101 1 602 146 204 131 chr1 35773216 35773392 -246420272 + Charlie1 DNA MER1_type 2321 2527 -234 1295 217 17 17 chr1 35773392 35773687 -246419977 - AluJo SINE Alu -15 297 3 602 146 204 131 chr1 35773687 35773729 -246419935 + Charlie1 DNA MER1_type 2527 2565 -196 578 179 0 0 chr1 35773750 35773845 -246419819 + FAM SINE Alu 61 155 -30 2153 131 0 16 chr1 35773845 35774151 -246419513 - AluSx SINE Alu -11 301 1 1828 170 0 3 chr1 35774248 35774536 -246419128 - AluSx SINE Alu -25 287 1 333 200 35 0 chr1 35774536 35774621 -246419043 + Charlie1 DNA MER1_type 2592 2679 -82 745 52 0 21 chr1 35774741 35774837 -246418827 - AluY SINE Alu -148 163 70 450 209 22 0 chr1 35774837 35774928 -246418736 - HY4 scRNA scRNA 0 93 1 2293 116 0 3 chr1 35775120 35775430 -246418234 - AluSg SINE Alu -1 309 1 2176 109 3 3 chr1 35775439 35775732 -246417932 - AluSx SINE Alu -19 293 1 2275 106 0 7 chr1 35775732 35776035 -246417629 - AluSp SINE Alu -12 301 1 1143 143 85 98 chr1 35776040 35776191 -246417473 - AluJb SINE Alu -1 311 160 2072 91 0 4 chr1 35776191 35776456 -246417208 - AluSg SINE Alu -46 264 1 1143 143 85 98 chr1 35776456 35776571 -246417093 - AluJb SINE Alu -152 160 47 4439 50 7 4 chr1 35776571 35777127 -246416537 - LTR6B LTR ERV1 0 558 1 1143 143 85 98 chr1 35777127 35777166 -246416498 - AluJb SINE Alu -265 47 9 1474 191 16 44 chr1 35777187 35777506 -246416158 - AluJo SINE Alu 0 312 3 428 195 37 15 chr1 35777530 35777562 -246416102 - Tigger3(Golem) DNA MER2_type -241 2797 2767 2361 80 7 7 chr1 35777562 35777862 -246415802 + AluSq SINE Alu 1 300 -13 428 195 37 15 chr1 35777862 35777938 -246415726 - Tigger3(Golem) DNA MER2_type -271 2767 1 638 193 0 25 chr1 35778014 35778133 -246415531 - FLAM_A SINE Alu -17 125 10 1987 114 40 4 chr1 35778159 35778476 -246415188 - AluSx SINE Alu 0 327 1 2230 101 10 0 chr1 35778499 35778796 -246414868 - AluSx SINE Alu -12 300 1 2365 102 0 0 chr1 35778831 35779126 -246414538 - AluSx SINE Alu -17 295 1 710 278 179 26 chr1 35779279 35779522 -246414142 - L2 LINE L2 0 3313 3109 2550 98 11 21 chr1 35779522 35779899 -246413765 - THE1C LTR MaLR -2 373 1 710 278 179 26 chr1 35779899 35780079 -246413585 - L2 LINE L2 -204 3109 2825 709 296 182 9 chr1 35780105 35780534 -246413130 - L2 LINE L2 -1733 1581 1079 3078 124 37 8 chr1 35780999 35781490 -246412174 - L1PA15 LINE L1 0 6165 5661 200 330 110 10 chr1 35781491 35781591 -246412073 - MIR SINE MIR -63 145 36 2436 88 3 0 chr1 35782311 35782618 -246411046 - AluY SINE Alu -3 308 1 1853 160 14 7 chr1 35782959 35783247 -246410417 - AluJo SINE Alu -22 290 1 2049 129 0 10 chr1 35783554 35783856 -246409808 + AluSx SINE Alu 1 299 -13 2027 128 0 3 chr1 35784206 35784503 -246409161 + AluJb SINE Alu 1 296 -16 1649 138 29 45 chr1 35784555 35784867 -246408797 - MER51A LTR ERV1 0 634 328 490 107 40 0 chr1 35784908 35784983 -246408681 - MER51A LTR ERV1 -556 78 1 23 78 0 0 chr1 35785051 35785102 -246408562 + AT_rich Low_complexity Low_complexity 1 51 0 2215 110 3 3 chr1 35785123 35785433 -246408231 + AluSp SINE Alu 1 310 -3 369 253 86 52 chr1 35785835 35786009 -246407655 - Charlie8 DNA MER1_type -2132 285 106 2146 110 3 0 chr1 35786089 35786389 -246407275 + AluSg1 SINE Alu 1 301 -8 1449 176 19 4 chr1 35786690 35786957 -246406707 + AluJb SINE Alu 39 309 -3 2226 80 0 20 chr1 35787046 35787348 -246406316 - AluY SINE Alu -15 296 1 901 152 0 0 chr1 35787365 35787497 -246406167 - FLAM_C SINE Alu 0 133 2 213 328 0 0 chr1 35787774 35787835 -246405829 + MIR3 SINE MIR 121 181 -27 2241 98 0 0 chr1 35787927 35788222 -246405442 + AluSq SINE Alu 1 295 -18 2242 88 3 0 chr1 35788296 35788590 -246405074 + AluSp SINE Alu 1 295 -18 1160 193 111 18 chr1 35789204 35789266 -246404398 - MER4E LTR ERV1 -231 535 480 2016 118 3 13 chr1 35789266 35789571 -246404093 + AluSc SINE Alu 1 302 -7 1160 193 111 18 chr1 35789571 35789812 -246403852 - MER4E LTR ERV1 -286 480 219 1896 112 4 0 chr1 35789812 35790080 -246403584 - AluSx SINE Alu -5 307 39 729 84 0 11 chr1 35791941 35792036 -246401628 - AluY SINE Alu -207 104 11 277 182 0 0 chr1 35792036 35792080 -246401584 - AluSx SINE Alu -256 44 1 2121 113 7 3 chr1 35792097 35792398 -246401266 - AluSx SINE Alu -9 303 2 267 237 0 17 chr1 35793623 35793682 -246399982 - AluSp/q SINE Alu -16 287 230 783 134 0 74 chr1 35793722 35793871 -246399793 - FLAM_C SINE Alu 0 143 6 742 213 17 70 chr1 35793874 35793949 -246399715 + L2 LINE L2 3084 3161 -152 2333 76 0 3 chr1 35793949 35794250 -246399414 - AluY SINE Alu -11 300 1 742 213 17 70 chr1 35794250 35794404 -246399260 + L2 LINE L2 3161 3301 -12 2517 226 36 13 chr1 35794412 35794943 -246398721 - MLT1G1 LTR MaLR -50 545 3 327 190 17 0 chr1 35795079 35795137 -246398527 - MLT1J LTR MaLR -325 186 128 * 878 196 67 11 chr1 35795107 35795286 -246398378 - MER21B LTR ERV1 -346 517 329 1354 225 98 56 chr1 35795894 35796041 -246397623 + LTR33 LTR ERVL 43 182 -339 2027 131 0 34 chr1 35796041 35796361 -246397303 - AluSx SINE Alu -3 309 1 1354 225 98 56 chr1 35796361 35796662 -246397002 + LTR33 LTR ERVL 182 510 -11 839 236 23 50 chr1 35796695 35796915 -246396749 + AluJo SINE Alu 89 302 -10 1060 81 0 0 chr1 35796923 35797059 -246396605 + AluSq/x SINE Alu 1 136 -176 2319 64 3 0 chr1 35797059 35797394 -246396270 + AluY SINE Alu 1 311 0 2254 113 0 0 chr1 35797398 35797708 -246395956 + AluSq SINE Alu 1 310 -3 321 217 83 67 chr1 35797983 35798103 -246395561 + MIR SINE MIR 81 202 -60 1623 110 103 7 chr1 35798188 35798460 -246395204 - AluSq SINE Alu -15 298 1 354 156 31 0 chr1 35798558 35798622 -246395042 - AluJo SINE Alu -4 298 233 960 136 0 87 chr1 35798623 35798807 -246394857 - AluJo SINE Alu -144 168 1 339 261 36 18 chr1 35798821 35798932 -246394732 + MIR SINE MIR 39 151 -111 2384 75 3 0 chr1 35798933 35799240 -246394424 + AluSp SINE Alu 1 308 -5 556 275 5 68 chr1 35799588 35799625 -246394039 - MIR SINE MIR -15 247 209 2209 110 0 0 chr1 35799625 35799926 -246393738 - AluSx SINE Alu -9 303 3 556 275 5 68 chr1 35799926 35800095 -246393569 - MIR SINE MIR -53 209 54 257 333 155 46 chr1 35800219 35800282 -246393382 + MIR SINE MIR 60 115 -147 2379 79 0 0 chr1 35800282 35800586 -246393078 - AluY SINE Alu -7 304 1 2290 97 0 0 chr1 35800588 35800888 -246392776 - AluSx SINE Alu -12 300 1 257 333 155 46 chr1 35800888 35800995 -246392669 + MIR SINE MIR 115 252 -10 21 57 0 0 chr1 35801149 35801184 -246392480 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 35801193 35801224 -246392440 + GC_rich Low_complexity Low_complexity 1 31 0 2288 68 0 19 chr1 35801506 35801814 -246391850 - AluY SINE Alu -9 302 1 321 264 124 47 chr1 35802264 35802393 -246391271 + L2 LINE L2 2914 3052 -220 2226 69 0 28 chr1 35802424 35802743 -246390921 - AluY SINE Alu -1 310 1 1769 103 0 129 chr1 35802744 35803085 -246390579 - AluSx SINE Alu -14 298 2 221 184 20 0 chr1 35803286 35803335 -246390329 + (CA)n Simple_repeat Simple_repeat 1 50 0 2108 121 3 0 chr1 35803461 35803759 -246389905 - AluSq SINE Alu -13 300 2 2213 85 10 0 chr1 35803769 35804062 -246389602 - AluSq SINE Alu -17 296 1 2355 57 27 0 chr1 35804062 35804358 -246389306 - AluSp SINE Alu -7 306 3 189 0 0 0 chr1 35804756 35804777 -246388887 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 513 252 56 0 chr1 35804959 35805102 -246388562 - MIR SINE MIR -51 211 61 192 307 61 35 chr1 35805267 35805381 -246388283 - MIR3 SINE MIR -78 130 14 226 254 56 0 chr1 35806284 35806355 -246387309 - MIR3 SINE MIR -45 163 89 1878 138 10 3 chr1 35806380 35806676 -246386988 - AluJb SINE Alu -13 299 2 412 260 10 10 chr1 35806848 35806948 -246386716 - MIR SINE MIR -144 118 19 1413 177 71 3 chr1 35809948 35810231 -246383433 - AluSx SINE Alu 0 302 1 291 293 13 0 chr1 35810751 35810826 -246382838 - MER117 DNA MER1_type -26 171 96 252 188 21 0 chr1 35810882 35810930 -246382734 - MIR3 SINE MIR -51 157 109 841 165 82 6 chr1 35811052 35811210 -246382454 + FRAM SINE Alu 6 175 -1 585 172 0 28 chr1 35811231 35811376 -246382288 + GA-rich Low_complexity Low_complexity 4 144 0 1491 178 6 62 chr1 35811403 35811538 -246382126 + AluJb SINE Alu 11 152 -160 2372 65 0 0 chr1 35811538 35811868 -246381796 + AluY SINE Alu 1 330 0 1491 178 6 62 chr1 35811868 35812051 -246381613 + AluJb SINE Alu 152 312 0 1106 115 0 0 chr1 35812116 35812273 -246381391 + AluSg/x SINE Alu 154 310 0 1435 165 25 79 chr1 35812359 35812516 -246381148 + AluSq SINE Alu 1 134 -179 1977 106 30 20 chr1 35812516 35812818 -246380846 + AluSp SINE Alu 1 305 -8 1435 165 25 79 chr1 35812818 35812976 -246380688 + AluSq SINE Alu 134 299 -14 2257 89 3 0 chr1 35812978 35813271 -246380393 + AluSg1 SINE Alu 3 296 -13 212 179 0 0 chr1 35813355 35813394 -246380270 - MIR SINE MIR -94 114 76 289 288 171 0 chr1 35813836 35813947 -246379717 + MIR SINE MIR 81 210 -52 2092 101 18 0 chr1 35814736 35815022 -246378642 - AluSx SINE Alu -20 292 2 2395 69 0 0 chr1 35815138 35815442 -246378222 - AluY SINE Alu -7 304 1 188 33 0 33 chr1 35815442 35815472 -246378192 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1913 122 7 4 chr1 35815472 35815751 -246377913 - AluSg SINE Alu -29 281 2 2764 13 0 0 chr1 35815797 35816108 -246377556 - AluYa5 SINE Alu 0 311 1 2263 89 0 7 chr1 35816108 35816411 -246377253 - AluSq SINE Alu -12 301 1 560 296 155 5 chr1 35816434 35816640 -246377024 + MIR SINE MIR 1 237 -25 323 321 22 92 chr1 35816892 35817048 -246376616 - L2 LINE L2 -53 3219 3088 2295 82 3 3 chr1 35817048 35817353 -246376311 + AluSp SINE Alu 1 305 -8 323 321 22 92 chr1 35817353 35817467 -246376197 - L2 LINE L2 -184 3088 2968 487 236 49 21 chr1 35817637 35817781 -246375883 + MIR SINE MIR 64 211 -51 1358 143 0 18 chr1 35818599 35818823 -246374841 + AluJb SINE Alu 85 304 -8 355 287 46 9 chr1 35819138 35819246 -246374418 + MIR SINE MIR 16 127 -81 2343 75 7 0 chr1 35819317 35819622 -246374042 + AluSp SINE Alu 1 307 -6 2112 90 41 3 chr1 35819622 35819912 -246373752 + AluSg SINE Alu 1 301 -9 195 341 40 32 chr1 35820050 35820176 -246373488 + MIR SINE MIR 130 256 -6 2028 68 82 11 chr1 35820280 35820559 -246373105 - AluY SINE Alu -12 299 1 334 318 13 0 chr1 35820612 35820763 -246372901 + (TG)n Simple_repeat Simple_repeat 1 149 -1583 2046 142 0 3 chr1 35820763 35821073 -246372591 - AluSg SINE Alu -1 309 1 334 318 13 0 chr1 35821073 35821082 -246372582 + (TG)n Simple_repeat Simple_repeat 149 156 -1576 2168 91 0 17 chr1 35821082 35821262 -246372402 - AluSp SINE Alu 0 313 139 2447 57 0 0 chr1 35821262 35821560 -246372104 - AluY SINE Alu -13 298 1 2168 91 0 17 chr1 35821560 35821696 -246371968 - AluSp SINE Alu -174 139 2 334 318 13 0 chr1 35821696 35821725 -246371939 + (TG)n Simple_repeat Simple_repeat 156 183 -1549 1473 162 42 32 chr1 35821725 35821868 -246371796 - AluJo SINE Alu -25 287 147 2205 88 0 7 chr1 35821868 35822165 -246371499 - AluSq SINE Alu -18 295 1 1473 162 42 32 chr1 35822165 35822305 -246371359 - AluJo SINE Alu -165 147 1 334 318 13 0 chr1 35822305 35822322 -246371342 + (TG)n Simple_repeat Simple_repeat 183 1732 0 251 237 11 75 chr1 35823127 35823220 -246370444 - MIR SINE MIR -75 133 47 2541 52 0 0 chr1 35823297 35823606 -246370058 + AluY SINE Alu 1 309 -2 235 250 0 0 chr1 35823613 35823669 -246369995 - MIR SINE MIR -147 115 60 556 275 5 68 chr1 35823793 35823962 -246369702 + MIR SINE MIR 54 209 -53 2173 111 0 0 chr1 35823962 35824260 -246369404 + AluSx SINE Alu 3 300 -12 556 275 5 68 chr1 35824260 35824297 -246369367 + MIR SINE MIR 209 247 -15 2384 75 3 0 chr1 35824645 35824952 -246368712 - AluSp SINE Alu -5 308 1 343 277 27 18 chr1 35824953 35825065 -246368599 - MIR SINE MIR -111 151 39 354 157 8 67 chr1 35825079 35825328 -246368336 + AluJo SINE Alu 1 298 -4 1623 110 103 7 chr1 35825426 35825698 -246367966 + AluSq SINE Alu 1 298 -15 260 250 83 67 chr1 35825783 35825903 -246367761 - MIR SINE MIR -60 202 81 2175 119 0 3 chr1 35826178 35826489 -246367175 - AluSq SINE Alu -3 310 1 2297 74 3 0 chr1 35826493 35826830 -246366834 - AluY SINE Alu 0 311 1 1060 81 0 0 chr1 35826830 35826966 -246366698 - AluSq/x SINE Alu -177 136 1 839 236 23 50 chr1 35826974 35827194 -246366470 - AluJo SINE Alu -10 302 89 1354 225 98 56 chr1 35827227 35827528 -246366136 - LTR33 LTR ERVL -11 510 182 2027 131 0 34 chr1 35827528 35827848 -246365816 + AluSx SINE Alu 1 309 -3 1354 225 98 56 chr1 35827848 35827995 -246365669 - LTR33 LTR ERVL -339 182 43 860 161 78 61 chr1 35828602 35828782 -246364882 + MER21B LTR ERV1 329 596 -335 314 207 17 0 chr1 35828752 35828810 -246364854 + MLT1J LTR MaLR 128 186 -325 * 2505 224 36 13 chr1 35828946 35829477 -246364187 + MLT1G1 LTR MaLR 3 545 -50 742 213 17 70 chr1 35829485 35829639 -246364025 - L2 LINE L2 -12 3301 3161 2333 76 0 3 chr1 35829639 35829940 -246363724 + AluY SINE Alu 1 300 -11 742 213 17 70 chr1 35829940 35830015 -246363649 - L2 LINE L2 -152 3161 3084 783 135 0 45 chr1 35830018 35830151 -246363513 + FLAM_C SINE Alu 6 132 -11 318 231 120 46 chr1 35830212 35830331 -246363333 - L2 LINE L2 -212 3060 2951 1924 166 0 3 chr1 35830331 35830644 -246363020 + AluJo SINE Alu 1 312 0 318 231 120 46 chr1 35830644 35830740 -246362924 - L2 LINE L2 -321 2951 2829 201 284 18 9 chr1 35831255 35831364 -246362300 + (CA)n Simple_repeat Simple_repeat 1 110 0 28 0 0 0 chr1 35832278 35832306 -246361358 + GC_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr1 35832332 35832375 -246361289 + GC_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr1 35832427 35832464 -246361200 + GC_rich Low_complexity Low_complexity 1 37 0 299 229 193 0 chr1 35833508 35833591 -246360073 + MIR SINE MIR 25 123 -85 2023 115 3 0 chr1 35833859 35834154 -246359510 + AluSq SINE Alu 1 296 -17 496 192 126 60 chr1 35834256 35834354 -246359310 + MIR SINE MIR 59 174 -88 2160 121 3 3 chr1 35834354 35834659 -246359005 - AluSq SINE Alu -8 305 1 496 192 126 60 chr1 35834659 35834727 -246358937 + MIR SINE MIR 174 236 -26 2260 89 0 3 chr1 35835041 35835344 -246358320 + AluSg1 SINE Alu 1 302 -7 2128 109 0 13 chr1 35835618 35835929 -246357735 + AluSc SINE Alu 1 307 -2 1964 145 3 0 chr1 35835993 35836304 -246357360 + AluJo SINE Alu 1 312 0 317 344 8 8 chr1 35836388 35836510 -246357154 + L3 LINE CR1 696 817 -760 2245 76 0 3 chr1 35836544 35836835 -246356829 - AluY SINE Alu -20 291 2 2138 95 27 0 chr1 35836836 35837132 -246356532 - AluSx SINE Alu -8 304 1 1606 144 52 14 chr1 35837320 35837611 -246356053 - AluJb SINE Alu -10 302 1 1998 89 24 10 chr1 35837620 35837913 -246355751 - AluSp SINE Alu -16 297 1 185 330 70 40 chr1 35837917 35838017 -246355647 + L3 LINE CR1 1242 1344 -233 456 137 0 6 chr1 35838030 35838280 -246355384 + AluSx SINE Alu 6 294 -16 2163 93 3 7 chr1 35838326 35838617 -246355047 + AluSg SINE Alu 1 290 -20 827 136 8 0 chr1 35838628 35838753 -246354911 + AluSx SINE Alu 169 294 -18 2331 73 0 3 chr1 35840400 35840702 -246352962 - AluY SINE Alu -10 301 1 869 187 27 0 chr1 35840711 35840861 -246352803 - AluJ SINE Alu -12 290 137 1304 140 45 5 chr1 35840897 35841119 -246352545 - AluJb SINE Alu -81 231 1 521 70 28 0 chr1 35841119 35841190 -246352474 - AluJ SINE Alu -177 135 63 308 73 0 0 chr1 35841190 35841231 -246352433 + MADE1 DNA Mariner 38 78 -2 2020 114 0 17 chr1 35841691 35841990 -246351674 + AluSg SINE Alu 3 296 -14 426 178 41 0 chr1 35841994 35842067 -246351597 - Tigger3(Golem) DNA MER2_type -2953 76 1 632 202 0 25 chr1 35842143 35842262 -246351402 - FLAM_A SINE Alu -17 125 10 1865 114 40 4 chr1 35842288 35842600 -246351064 - AluSx SINE Alu 0 322 1 2092 104 10 0 chr1 35842623 35842920 -246350744 - AluSx SINE Alu -12 300 1 2218 105 0 0 chr1 35842955 35843250 -246350414 - AluSx SINE Alu -17 295 1 853 276 179 26 chr1 35843403 35843646 -246350018 - L2 LINE L2 0 3313 3109 2558 98 11 21 chr1 35843646 35844023 -246349641 - THE1C LTR MaLR -2 373 1 853 276 179 26 chr1 35844023 35844203 -246349461 - L2 LINE L2 -204 3109 2825 861 296 182 9 chr1 35844229 35844658 -246349006 - L2 LINE L2 -1733 1581 1079 197 203 0 102 chr1 35844760 35844819 -246348845 - MIR3 SINE MIR -4 204 152 3054 124 37 8 chr1 35845124 35845615 -246348049 - L1PA15 LINE L1 0 6165 5661 235 330 110 10 chr1 35845616 35845716 -246347948 - MIR SINE MIR -63 145 36 2295 91 3 0 chr1 35846436 35846743 -246346921 - AluY SINE Alu -3 308 1 1734 160 14 7 chr1 35847086 35847374 -246346290 - AluJo SINE Alu -22 290 1 1927 129 0 10 chr1 35847681 35847983 -246345681 + AluSx SINE Alu 1 299 -13 2003 128 0 3 chr1 35848333 35848630 -246345034 + AluJb SINE Alu 1 296 -16 1865 124 25 44 chr1 35848682 35848997 -246344667 - MER51A LTR ERV1 0 634 326 508 107 40 0 chr1 35849036 35849111 -246344553 - MER51A LTR ERV1 -556 78 1 23 78 0 0 chr1 35849179 35849230 -246344434 + AT_rich Low_complexity Low_complexity 1 51 0 2205 107 3 3 chr1 35849251 35849561 -246344103 + AluSp SINE Alu 1 310 -3 379 253 86 52 chr1 35849963 35850137 -246343527 - Charlie8 DNA MER1_type -2132 285 106 2121 110 3 0 chr1 35850217 35850517 -246343147 + AluSg1 SINE Alu 1 301 -8 1398 170 23 4 chr1 35850817 35851082 -246342582 + AluJb SINE Alu 37 306 -6 2216 79 0 20 chr1 35851175 35851478 -246342186 - AluY SINE Alu -14 297 1 888 152 0 0 chr1 35851495 35851627 -246342037 - FLAM_C SINE Alu 0 133 2 220 328 0 0 chr1 35851904 35851965 -246341699 + MIR3 SINE MIR 121 181 -27 2226 98 0 0 chr1 35852057 35852352 -246341312 + AluSq SINE Alu 1 295 -18 2230 86 3 0 chr1 35852426 35852718 -246340946 + AluSp SINE Alu 1 293 -20 1897 96 0 8 chr1 35852947 35853208 -246340456 - AluSc SINE Alu -17 292 34 1141 74 0 0 chr1 35853209 35853357 -246340307 + AluSg/x SINE Alu 145 292 -20 609 14 0 0 chr1 35853363 35853433 -246340231 + (TATAA)n Simple_repeat Simple_repeat 3 72 0 1265 40 7 0 chr1 35853482 35853632 -246340032 + MER4E LTR ERV1 1 151 -615 2142 102 10 0 chr1 35853632 35853926 -246339738 - AluSx SINE Alu -15 297 1 1351 180 70 0 chr1 35853926 35854097 -246339567 - AluJo SINE Alu -21 291 93 4897 85 19 27 chr1 35854097 35854790 -246338874 - LTR8 LTR ERV1 0 691 5 1351 180 70 0 chr1 35854790 35854890 -246338774 - AluJo SINE Alu -219 93 1 1824 104 7 7 chr1 35855176 35855446 -246338218 + AluSx SINE Alu 1 270 -42 1507 142 12 4 chr1 35855667 35855921 -246337743 - AluSx SINE Alu -17 295 40 1778 116 11 35 chr1 35855930 35856214 -246337450 - AluSx SINE Alu -33 279 3 189 0 0 0 chr1 35856423 35856444 -246337220 + (ATG)n Simple_repeat Simple_repeat 2 22 0 2055 78 18 0 chr1 35856449 35856731 -246336933 - AluY SINE Alu -24 287 1 455 122 17 211 chr1 35856830 35857010 -246336654 - Charlie5 DNA MER1_type -27 2585 2480 1876 121 3 24 chr1 35857111 35857279 -246336385 - AluSx SINE Alu -13 299 138 1780 134 17 14 chr1 35857279 35857436 -246336228 - AluSx SINE Alu -21 291 131 2107 120 0 0 chr1 35857436 35857745 -246335919 - AluY SINE Alu -2 309 1 1780 134 17 14 chr1 35857745 35857877 -246335787 - AluSx SINE Alu -181 131 1 1876 121 3 24 chr1 35857877 35858005 -246335659 - AluSx SINE Alu -174 138 9 1963 108 4 0 chr1 35858017 35858296 -246335368 - AluSg SINE Alu -9 301 22 343 238 0 0 chr1 35858522 35858585 -246335079 - AluJ/FLAM SINE Alu -239 63 1 2313 81 0 0 chr1 35858724 35859020 -246334644 - AluSc SINE Alu -13 296 1 248 214 43 57 chr1 35859097 35859167 -246334497 - L2 LINE L2 -1 3271 3203 1551 105 27 27 chr1 35859191 35859448 -246334216 + AluSg1 SINE Alu 53 309 0 2193 71 10 7 chr1 35859457 35859752 -246333912 + AluSc SINE Alu 1 296 -13 1803 86 71 0 chr1 35859812 35860081 -246333583 + AluY SINE Alu 1 288 -23 274 138 169 15 chr1 35860144 35860209 -246333455 - HsTC2 DNA Tc2 -1821 77 3 465 305 90 11 chr1 35860338 35860515 -246333149 - MIR SINE MIR -50 212 22 1924 96 56 0 chr1 35860559 35860879 -246332785 + AluSx SINE Alu 2 336 0 224 319 69 0 chr1 35860894 35860966 -246332698 - L2 LINE L2 -299 2973 2897 2143 95 14 3 chr1 35861023 35861319 -246332345 - AluSc SINE Alu -10 299 1 2301 87 0 3 chr1 35861337 35861637 -246332027 - AluSq SINE Alu -14 299 1 451 240 156 7 chr1 35861853 35862007 -246331657 + MIR SINE MIR 22 198 -64 1097 165 142 0 chr1 35862441 35862695 -246330969 - MER33 DNA MER1_type -25 299 10 898 123 14 0 chr1 35863565 35863703 -246329961 + FLAM_C SINE Alu 1 140 -3 1896 138 10 10 chr1 35864782 35865094 -246328570 + AluSx SINE Alu 1 312 0 1959 92 60 3 chr1 35865429 35865711 -246327953 - AluSc SINE Alu -11 298 1 2178 105 0 0 chr1 35865930 35866224 -246327440 - AluSg SINE Alu -16 294 1 808 164 16 55 chr1 35866262 35866445 -246327219 - AluSg/x SINE Alu 0 310 135 210 105 0 0 chr1 35868343 35868381 -246325283 + (A)n Simple_repeat Simple_repeat 1 38 0 378 191 66 103 chr1 35869161 35869297 -246324367 - MER58B DNA MER1_type -29 312 182 2180 111 0 0 chr1 35869408 35869705 -246323959 - AluSx SINE Alu -15 297 1 1121 159 264 65 chr1 35869713 35869831 -246323833 + L1MB7 LINE L1 5708 5801 -383 1895 161 3 0 chr1 35869831 35870142 -246323522 + AluSx SINE Alu 1 312 0 1121 159 264 65 chr1 35870142 35870183 -246323481 + L1MB7 LINE L1 5801 5833 -351 2085 95 21 0 chr1 35870183 35870467 -246323197 + AluSq SINE Alu 1 290 -23 1121 159 264 65 chr1 35870467 35870658 -246323006 + L1MB7 LINE L1 5833 6129 -55 1076 270 117 61 chr1 35870977 35871678 -246321986 - MER21B LTR ERV1 -123 740 1 1011 139 0 23 chr1 35871763 35871936 -246321728 - AluJo SINE Alu -20 292 124 2212 96 0 22 chr1 35872076 35872389 -246321275 - AluSq SINE Alu -7 306 1 880 188 0 0 chr1 35872517 35872666 -246320998 - AluJo/FRAM SINE Alu -10 302 154 1258 183 17 0 chr1 35872668 35872903 -246320761 - AluJb SINE Alu -73 239 1 2447 60 0 0 chr1 35872922 35873223 -246320441 - AluY SINE Alu -9 302 2 1076 168 5 5 chr1 35874974 35875159 -246318505 - AluSg/x SINE Alu -22 290 106 512 207 63 18 chr1 35875181 35875292 -246318372 - FLAM_A SINE Alu -17 116 1 1643 132 0 0 chr1 35875332 35875574 -246318090 - AluSg SINE Alu -68 242 1 1086 147 0 0 chr1 35876140 35876317 -246317347 + AluSp SINE Alu 137 313 0 717 30 160 0 chr1 35876406 35876506 -246317158 + MER85 DNA T2_type 24 139 0 657 175 0 0 chr1 35876704 35876801 -246316863 - AluS SINE Alu -215 98 2 2369 69 0 3 chr1 35876964 35877267 -246316397 - AluY SINE Alu -8 303 2 1746 193 52 0 chr1 35878851 35879178 -246314486 - MER2 DNA MER2_type 0 344 1 3986 167 53 65 chr1 35879223 35880189 -246313475 - LTR13 LTR ERVK 0 954 1 2233 77 10 3 chr1 35880220 35880517 -246313147 + AluSx SINE Alu 1 299 -13 258 312 47 44 chr1 35880979 35881123 -246312541 + MIR SINE MIR 8 152 -56 21 0 0 0 chr1 35881133 35881154 -246312510 + AT_rich Low_complexity Low_complexity 1 21 0 2077 115 0 16 chr1 35881180 35881348 -246312316 - AluSx SINE Alu -11 301 139 2436 57 0 0 chr1 35881348 35881646 -246312018 - AluY SINE Alu -13 298 1 2077 115 0 16 chr1 35881646 35881782 -246311882 - AluSx SINE Alu -173 139 2 1432 162 42 32 chr1 35881811 35881954 -246311710 - AluJo SINE Alu -25 287 147 2186 88 0 7 chr1 35881954 35882251 -246311413 - AluSq SINE Alu -18 295 1 1432 162 42 32 chr1 35882251 35882391 -246311273 - AluJo SINE Alu -165 147 1 262 204 21 86 chr1 35883213 35883306 -246310358 - MIR SINE MIR -75 133 47 2449 47 0 0 chr1 35883383 35883679 -246309985 + AluY SINE Alu 1 296 -15 1633 161 31 3 chr1 35883691 35883983 -246309681 + AluSg SINE Alu 1 300 -10 1833 164 0 16 chr1 35884157 35884474 -246309190 + AluJo SINE Alu 1 312 0 2242 102 0 0 chr1 35884771 35885076 -246308588 - AluSc SINE Alu -3 306 2 195 69 0 0 chr1 35885099 35885128 -246308536 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 886 94 11 171 chr1 35885199 35885271 -246308393 + AluJo SINE Alu 72 154 -158 1524 139 19 104 chr1 35885271 35885580 -246308084 + AluJo SINE Alu 1 283 -29 198 0 0 0 chr1 35885580 35885602 -246308062 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 886 94 11 171 chr1 35885602 35885709 -246307955 + AluJo SINE Alu 152 223 -89 2102 123 19 7 chr1 35885755 35886063 -246307601 + AluSx SINE Alu 1 312 0 1971 167 3 0 chr1 35886100 35886411 -246307253 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 35886919 35886941 -246306723 + AT_rich Low_complexity Low_complexity 1 22 0 2274 94 0 13 chr1 35887235 35887533 -246306131 + AluSq SINE Alu 1 294 -19 2128 125 0 34 chr1 35887534 35887854 -246305810 + AluSg SINE Alu 2 310 0 1437 171 33 22 chr1 35888042 35888316 -246305348 + AluJo SINE Alu 5 281 -31 575 144 42 17 chr1 35888326 35888444 -246305220 - L1MB3 LINE L1 -7 6176 6056 2357 72 0 10 chr1 35888460 35888752 -246304912 - AluY SINE Alu -22 289 1 2138 126 7 7 chr1 35888833 35889134 -246304530 + AluSg SINE Alu 1 301 -9 22 56 0 0 chr1 35890182 35890218 -246303446 + AT_rich Low_complexity Low_complexity 1 36 0 2122 92 61 3 chr1 35890284 35890579 -246303085 + AluSx SINE Alu 1 312 0 1298 130 5 5 chr1 35890667 35890852 -246302812 - AluSg/x SINE Alu -22 290 106 502 198 63 18 chr1 35890874 35890985 -246302679 - FLAM_A SINE Alu -17 116 1 1873 116 0 0 chr1 35891025 35891267 -246302397 - AluSg SINE Alu -68 242 1 1160 140 0 11 chr1 35891833 35892011 -246301653 + AluSp SINE Alu 137 312 -1 672 30 160 0 chr1 35892100 35892200 -246301464 + MER85 DNA T2_type 24 139 0 631 175 0 0 chr1 35892398 35892495 -246301169 - AluS SINE Alu -215 98 2 2253 120 0 3 chr1 35892658 35892959 -246300705 - AluSg SINE Alu -9 301 2 1652 193 52 0 chr1 35894543 35894870 -246298794 - MER2 DNA MER2_type 0 344 1 3765 178 42 55 chr1 35894915 35895881 -246297783 - LTR13 LTR ERVK 0 954 1 2374 81 10 3 chr1 35895912 35896209 -246297455 + AluSx SINE Alu 1 299 -13 241 322 70 35 chr1 35896700 35896815 -246296849 + MIR SINE MIR 34 152 -56 21 0 0 0 chr1 35896825 35896846 -246296818 + AT_rich Low_complexity Low_complexity 1 21 0 2212 133 0 0 chr1 35896872 35897173 -246296491 - AluSx SINE Alu -11 301 1 435 224 78 0 chr1 35897456 35897572 -246296092 + Tigger1 DNA MER2_type 26 150 -2268 672 81 0 0 chr1 35897590 35897689 -246295975 + Tigger1 DNA MER2_type 2209 2307 -111 2315 126 0 0 chr1 35897818 35898127 -246295537 + AluSg SINE Alu 1 309 -1 417 211 22 0 chr1 35898319 35898409 -246295255 + HY4 scRNA scRNA 1 92 -1 1926 55 0 47 chr1 35898409 35898663 -246295001 + AluY SINE Alu 69 310 -1 2434 78 0 0 chr1 35898692 35898986 -246294678 + AluY SINE Alu 1 294 -17 580 129 0 0 chr1 35899032 35899117 -246294547 + AluJb SINE Alu 204 288 -24 517 214 129 28 chr1 35899269 35899447 -246294217 - L1ME3 LINE L1 -9 6153 5958 29 0 0 0 chr1 35899500 35899529 -246294135 + AT_rich Low_complexity Low_complexity 1 29 0 1233 102 11 27 chr1 35899552 35899738 -246293926 - AluSg/x SINE Alu 0 312 130 1953 151 0 0 chr1 35899839 35900117 -246293547 + AluSx SINE Alu 24 301 -11 2232 116 0 0 chr1 35900137 35900438 -246293226 - AluSx SINE Alu -11 301 1 1085 269 134 31 chr1 35900460 35900847 -246292817 - L1MCa LINE L1 -4574 2033 1687 1710 178 24 10 chr1 35900847 35901145 -246292519 - AluJb SINE Alu -10 302 1 1085 269 134 31 chr1 35901145 35901576 -246292088 - L1MCa LINE L1 -4920 1687 1302 2298 78 35 0 chr1 35901576 35901897 -246291767 - AluY SINE Alu 0 311 1 1085 269 134 31 chr1 35901897 35901978 -246291686 - L1MCa LINE L1 -5305 1302 875 2225 99 7 0 chr1 35902653 35902979 -246290685 - AluSp SINE Alu 0 328 1 2220 118 0 0 chr1 35902986 35903273 -246290391 - AluSg SINE Alu -23 287 1 2361 80 3 0 chr1 35903335 35903624 -246290040 - AluSg SINE Alu -20 290 1 2087 129 3 7 chr1 35903701 35903995 -246289669 + AluSg1 SINE Alu 1 293 -16 2506 77 0 6 chr1 35903996 35904308 -246289356 + AluY SINE Alu 1 310 -1 1095 86 0 0 chr1 35904337 35904476 -246289188 - AluSc SINE Alu -9 300 162 430 272 11 0 chr1 35905758 35905850 -246287814 + MER45 DNA AcHobo 1 93 -1488 2194 98 0 20 chr1 35905852 35906011 -246287653 - AluSg1 SINE Alu -19 290 138 2434 92 3 0 chr1 35906011 35906316 -246287348 - AluSp SINE Alu -7 306 1 2194 98 0 20 chr1 35906316 35906452 -246287212 - AluSg1 SINE Alu -171 138 1 1245 165 3 123 chr1 35906452 35906786 -246286878 - AluSx SINE Alu -7 295 2 2259 113 0 0 chr1 35906789 35907090 -246286574 - AluSx SINE Alu -10 302 2 282 209 23 39 chr1 35908602 35908731 -246284933 + (CCCCG)n Simple_repeat Simple_repeat 2 128 0 37 109 0 0 chr1 35908741 35908897 -246284767 + GC_rich Low_complexity Low_complexity 1 156 0 22 70 0 0 chr1 35908974 35909017 -246284647 + GC_rich Low_complexity Low_complexity 1 43 0 189 192 0 77 chr1 35911284 35911336 -246282328 - MIR SINE MIR -69 139 92 269 153 153 0 chr1 35911407 35911479 -246282185 - MIR3 SINE MIR -25 183 101 2204 114 16 3 chr1 35911717 35912023 -246281641 + AluSx SINE Alu 1 310 -2 2009 130 23 13 chr1 35912151 35912458 -246281206 + AluSg SINE Alu 1 310 0 2273 112 7 0 chr1 35912461 35912766 -246280898 + AluSc SINE Alu 3 309 0 2478 128 26 20 chr1 35912766 35913048 -246280616 + L1P4 LINE L1 5319 5607 -559 2090 119 26 3 chr1 35913048 35913351 -246280313 + AluSp SINE Alu 1 310 -3 2478 128 26 20 chr1 35913351 35913522 -246280142 + L1P4 LINE L1 5607 5775 -391 1698 192 0 13 chr1 35913529 35913831 -246279833 + AluJb SINE Alu 1 298 -14 1384 137 28 39 chr1 35913965 35914252 -246279412 + AluSx SINE Alu 40 312 0 715 212 34 0 chr1 35914253 35914399 -246279265 + AluJo/FRAM SINE Alu 138 288 -14 371 290 85 14 chr1 35914617 35914772 -246278892 + L1MC/D LINE L1 5490 5653 -484 255 270 212 0 chr1 35914792 35914929 -246278735 + L1MC/D LINE L1 5721 5886 -1922 2156 120 3 16 chr1 35915074 35915382 -246278282 - AluSq SINE Alu -9 304 1 210 288 25 0 chr1 35915438 35915518 -246278146 + (TA)n Simple_repeat Simple_repeat 1 82 0 300 280 54 32 chr1 35915518 35915611 -246278053 - L1MC4 LINE L1 -1333 6709 6615 390 280 32 0 chr1 35915639 35915796 -246277868 + (TA)n Simple_repeat Simple_repeat 1 162 0 1985 102 0 4 chr1 35915854 35916108 -246277556 + AluSx SINE Alu 50 302 -10 466 200 96 78 chr1 35916264 35916494 -246277170 - MER106A DNA MER1_type -1 235 2 2140 118 10 0 chr1 35916506 35916795 -246276869 + AluSx SINE Alu 5 296 -16 2081 152 0 0 chr1 35917358 35917661 -246276003 - AluSx SINE Alu -9 303 1 208 280 0 27 chr1 35917816 35917891 -246275773 + A-rich Low_complexity Low_complexity 2 74 0 2282 115 3 0 chr1 35918003 35918308 -246275356 + AluSx SINE Alu 1 306 -6 1024 121 0 42 chr1 35918311 35918477 -246275187 + AluSg/x SINE Alu 152 310 0 219 283 0 50 chr1 35918479 35918539 -246275125 - MIR SINE MIR -155 107 51 701 239 25 6 chr1 35918636 35918799 -246274865 + MER5A DNA MER1_type 24 189 0 1653 163 58 11 chr1 35919378 35919655 -246274009 + AluJo SINE Alu 1 290 -22 2292 101 0 25 chr1 35919660 35919977 -246273687 + AluSq SINE Alu 1 309 -4 1810 151 0 17 chr1 35920265 35920564 -246273100 - AluJb SINE Alu -18 294 1 2505 74 3 0 chr1 35920697 35921007 -246272657 + AluY SINE Alu 1 311 0 2337 77 7 16 chr1 35921808 35922118 -246271546 + AluSq SINE Alu 1 307 -6 2364 82 10 0 chr1 35922118 35922411 -246271253 + AluSq SINE Alu 1 296 -17 2254 125 3 0 chr1 35922421 35922716 -246270948 + AluSp SINE Alu 2 297 -16 2231 107 0 3 chr1 35922772 35923063 -246270601 - AluY SINE Alu -20 291 2 356 275 124 43 chr1 35923064 35923297 -246270367 - L1ME LINE L1 -349 5772 5521 2317 82 3 17 chr1 35923302 35923596 -246270068 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 35924887 35924922 -246268742 + AT_rich Low_complexity Low_complexity 1 35 0 319 194 45 0 chr1 35930174 35930241 -246263423 + MER103 DNA DNA 3 72 -94 319 255 112 58 chr1 35930275 35930477 -246263187 - MIR SINE MIR 0 262 37 2511 63 0 13 chr1 35930477 35930780 -246262884 - AluY SINE Alu -12 299 1 1923 135 35 3 chr1 35931155 35931437 -246262227 - AluSq SINE Alu -22 291 1 234 267 103 35 chr1 35931495 35931611 -246262053 - MIR3 SINE MIR -27 181 58 186 103 0 0 chr1 35931755 35931784 -246261880 + (GGGGA)n Simple_repeat Simple_repeat 2 30 0 309 242 39 112 chr1 35933188 35933366 -246260298 - MIR3 SINE MIR -20 188 24 2217 115 0 16 chr1 35934987 35935291 -246258373 + AluSx SINE Alu 9 307 -5 325 221 48 58 chr1 35935357 35935461 -246258203 + L2 LINE L2 3211 3313 0 1526 192 4 4 chr1 35935591 35935857 -246257807 + AluJb SINE Alu 1 266 -46 2416 90 7 7 chr1 35935878 35936188 -246257476 + AluSx SINE Alu 1 310 -2 618 234 78 6 chr1 35936193 35936440 -246257224 - L2 LINE L2 -277 3036 2774 2265 115 0 10 chr1 35936468 35936773 -246256891 + AluSx SINE Alu 1 302 -10 607 113 0 0 chr1 35936783 35936863 -246256801 + AluS SINE Alu 7 86 -226 2310 92 0 13 chr1 35936864 35937168 -246256496 + AluSg SINE Alu 1 300 -10 684 159 0 0 chr1 35937186 35937299 -246256365 + FRAM SINE Alu 62 174 -2 346 272 43 68 chr1 35937640 35937802 -246255862 - MIR SINE MIR -84 178 21 210 307 148 11 chr1 35937985 35938073 -246255591 - L2 LINE L2 -17 3255 3156 180 255 0 0 chr1 35938511 35938558 -246255106 - MIR SINE MIR -78 130 84 2309 97 0 0 chr1 35938863 35939163 -246254501 + AluSg SINE Alu 1 300 -10 270 300 0 11 chr1 35939869 35939959 -246253705 - MIR SINE MIR -116 146 58 270 273 223 7 chr1 35940427 35940568 -246253096 + MIR SINE MIR 15 188 -63 330 233 21 11 chr1 35940603 35940705 -246252959 - MIR SINE MIR -103 105 10 359 269 43 28 chr1 35940900 35941041 -246252623 + MIR3 SINE MIR 36 178 -30 563 268 31 36 chr1 35941925 35942119 -246251545 + MIR SINE MIR 15 207 -55 2263 120 0 0 chr1 35942766 35943065 -246250599 - AluSq SINE Alu -14 299 1 1770 152 9 47 chr1 35943067 35943389 -246250275 - AluJb SINE Alu -2 310 1 254 204 56 0 chr1 35944078 35944132 -246249532 + MIR SINE MIR 87 143 -65 184 283 59 86 chr1 35944136 35944323 -246249341 - MIR3 SINE MIR -20 188 7 214 242 15 15 chr1 35944807 35944873 -246248791 + G-rich Low_complexity Low_complexity 6 71 0 21 36 0 0 chr1 35945707 35945735 -246247929 + GC_rich Low_complexity Low_complexity 1 28 0 363 186 70 0 chr1 35946155 35946241 -246247423 - MIR SINE MIR -14 248 157 1603 96 9 0 chr1 35946243 35946461 -246247203 - AluSg/x SINE Alu -3 307 88 2260 95 11 0 chr1 35946584 35946894 -246246770 + AluSq SINE Alu 1 313 0 1072 112 39 22 chr1 35946894 35947073 -246246591 + AluSg/x SINE Alu 131 312 0 2241 112 7 0 chr1 35947076 35947381 -246246283 + AluSc SINE Alu 3 309 0 2704 117 26 20 chr1 35947381 35947664 -246246000 + L1P4 LINE L1 5318 5607 -559 2129 116 26 0 chr1 35947664 35947967 -246245697 + AluSp SINE Alu 1 311 -2 2704 117 26 20 chr1 35947967 35948138 -246245526 + L1P4 LINE L1 5607 5775 -391 1647 192 0 13 chr1 35948145 35948447 -246245217 + AluJb SINE Alu 1 298 -14 1359 138 28 36 chr1 35948581 35948866 -246244798 + AluSx SINE Alu 40 312 0 740 212 34 0 chr1 35948867 35949013 -246244651 + AluJo/FRAM SINE Alu 138 288 -14 382 283 87 14 chr1 35949231 35949369 -246244295 + L1ME4a LINE L1 5490 5637 -484 273 268 197 22 chr1 35949406 35949589 -246244075 + L1ME4a LINE L1 5721 5937 -184 2108 119 3 16 chr1 35949688 35949991 -246243673 - AluSq SINE Alu -14 299 1 408 226 41 0 chr1 35950110 35950411 -246243253 + (TA)n Simple_repeat Simple_repeat 1 313 0 1952 102 0 4 chr1 35950469 35950723 -246242941 + AluSx SINE Alu 50 302 -10 520 200 96 78 chr1 35950879 35951109 -246242555 - MER106A DNA MER1_type -1 235 2 2167 107 10 0 chr1 35951121 35951410 -246242254 + AluSx SINE Alu 5 296 -16 2114 111 3 41 chr1 35951973 35952288 -246241376 - AluSx SINE Alu -9 303 1 1687 159 10 34 chr1 35952300 35952596 -246241068 - AluJo SINE Alu -23 289 1 244 329 79 0 chr1 35953023 35953163 -246240501 + MIR3 SINE MIR 30 180 -28 1210 194 49 74 chr1 35953237 35953502 -246240162 - MER58B DNA MER1_type -2079 341 86 2240 119 3 0 chr1 35953502 35953813 -246239851 + AluSx SINE Alu 1 312 0 1210 194 49 74 chr1 35953813 35953897 -246239767 - MER58B DNA MER1_type -2334 86 1 1695 112 50 8 chr1 35953919 35954178 -246239486 - Tigger3(Golem) DNA MER2_type 0 3029 2760 1131 104 0 0 chr1 35954178 35954322 -246239342 + AluSq/x SINE Alu 1 144 -168 1611 129 0 4 chr1 35954422 35954654 -246239010 + AluSg/x SINE Alu 78 308 -2 1122 164 29 24 chr1 35954674 35954714 -246238950 + AluJb SINE Alu 98 136 -176 2283 117 0 3 chr1 35954714 35955021 -246238643 + AluSx SINE Alu 1 306 -6 1122 164 29 24 chr1 35955021 35955188 -246238476 + AluJb SINE Alu 136 306 -6 1360 201 75 11 chr1 35955192 35955471 -246238193 + AluJo SINE Alu 3 299 -13 2826 139 26 83 chr1 35955471 35955910 -246237754 + L1MB3 LINE L1 5606 6069 -114 633 231 8 8 chr1 35955910 35956040 -246237624 + FLAM_A SINE Alu 4 133 0 2826 139 26 83 chr1 35956040 35956141 -246237523 + L1MB3 LINE L1 6069 6110 -73 2450 87 0 0 chr1 35956141 35956439 -246237225 - AluSq SINE Alu -15 298 1 2826 139 26 83 chr1 35956439 35956508 -246237156 + L1MB3 LINE L1 6110 6181 -2 2155 199 42 58 chr1 35956522 35956636 -246237028 + L1ME1 LINE L1 5471 5585 -581 2491 59 23 0 chr1 35956636 35956940 -246236724 - AluY SINE Alu 0 311 1 2155 199 42 58 chr1 35956940 35957398 -246236266 + L1ME1 LINE L1 5585 6034 -132 1316 34 0 0 chr1 35957416 35957562 -246236102 - AluSp/q SINE Alu -12 301 156 428 143 0 0 chr1 35957688 35957751 -246235913 - AluJ/FLAM SINE Alu -238 74 12 840 155 8 0 chr1 35957793 35957922 -246235742 + AluSq/x SINE Alu 4 133 -180 2298 100 0 7 chr1 35957925 35958226 -246235438 + AluSx SINE Alu 1 299 -13 1831 83 120 26 chr1 35958253 35958388 -246235276 + AluY SINE Alu 1 122 -189 2085 124 17 0 chr1 35958388 35958679 -246234985 + AluSp SINE Alu 1 296 -17 1831 83 120 26 chr1 35958679 35958835 -246234829 + AluY SINE Alu 122 311 0 2629 186 116 104 chr1 35958852 35959245 -246234419 + L1MC/D LINE L1 4122 4509 -1686 1973 153 0 3 chr1 35959245 35959545 -246234119 + AluSx SINE Alu 1 299 -13 2629 186 116 104 chr1 35959545 35959870 -246233794 + L1MC/D LINE L1 4509 4829 -1366 306 0 0 0 chr1 35959870 35959904 -246233760 + (TG)n Simple_repeat Simple_repeat 2 35 0 276 30 0 0 chr1 35959903 35959936 -246233728 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 2629 186 116 104 chr1 35959904 35959937 -246233727 + L1MC/D LINE L1 4829 4860 -1335 1682 153 35 21 chr1 35959937 35960219 -246233445 - AluJb SINE Alu -6 306 21 2629 186 116 104 chr1 35960219 35960389 -246233275 + L1MC/D LINE L1 4860 5027 -1168 2372 91 3 0 chr1 35960389 35960686 -246232978 - AluSp SINE Alu -7 306 9 2629 186 116 104 chr1 35960686 35960958 -246232706 + L1MC/D LINE L1 5027 5313 -882 2527 69 0 3 chr1 35960958 35961263 -246232401 - AluY SINE Alu -7 304 1 2629 186 116 104 chr1 35961263 35961405 -246232259 + L1MC/D LINE L1 5313 5452 -743 919 214 229 23 chr1 35961621 35961887 -246231777 - L2 LINE L2 -449 2865 2655 2273 140 9 6 chr1 35961887 35962230 -246231434 - MER2 DNA MER2_type 0 344 1 919 214 229 23 chr1 35962230 35962313 -246231351 - L2 LINE L2 -659 2655 2444 252 217 0 0 chr1 35962451 35962497 -246231167 - MIR SINE MIR -133 75 30 1857 139 33 13 chr1 35962499 35962800 -246230864 - AluJo SINE Alu -5 307 1 1868 131 53 0 chr1 35962929 35963211 -246230453 - AluSg SINE Alu -13 297 1 273 355 154 31 chr1 35963546 35963904 -246229760 - L2 LINE L2 0 3272 2871 301 259 154 35 chr1 35963963 35964091 -246229573 - MIR SINE MIR -36 226 115 1975 135 46 0 chr1 35964091 35964373 -246229291 - AluSx SINE Alu -17 295 1 301 259 154 35 chr1 35964373 35964445 -246229219 - MIR SINE MIR -147 115 2 804 159 19 125 chr1 35964532 35964717 -246228947 - MER5A DNA MER1_type 0 189 27 2237 101 0 44 chr1 35964717 35965033 -246228631 - AluSx SINE Alu -10 302 1 804 159 19 125 chr1 35965033 35965055 -246228609 - MER5A DNA MER1_type -162 27 4 386 285 79 47 chr1 35965237 35965472 -246228192 + MIR SINE MIR 17 261 -1 251 220 66 33 chr1 35965764 35965855 -246227809 + L1P LINE L1 5315 5408 -743 602 172 78 117 chr1 35966438 35966618 -246227046 - MIR SINE MIR -38 224 52 433 272 66 42 chr1 35966850 35967008 -246226656 - MIR SINE MIR -1 261 95 1830 130 33 4 chr1 35967008 35967284 -246226380 + AluJb SINE Alu 29 312 0 433 272 66 42 chr1 35967284 35967338 -246226326 - MIR SINE MIR -167 95 44 2277 94 10 0 chr1 35968086 35968385 -246225279 - AluSq SINE Alu -6 307 6 23 68 0 0 chr1 35968622 35968666 -246224998 + AT_rich Low_complexity Low_complexity 1 44 0 330 264 174 7 chr1 35968918 35969062 -246224602 + L1MEc LINE L1 37 204 -6192 720 228 70 21 chr1 35969094 35969335 -246224329 + L1MEc LINE L1 1615 1867 -4529 2454 74 7 0 chr1 35969337 35969636 -246224028 + AluSp SINE Alu 1 301 -12 756 215 7 0 chr1 35969667 35969811 -246223853 + FRAM SINE Alu 20 164 -12 744 167 70 87 chr1 35969816 35970115 -246223549 + L1MEc LINE L1 2072 2365 -4031 2200 119 3 7 chr1 35970128 35970430 -246223234 + AluSg SINE Alu 1 301 -9 2033 144 10 3 chr1 35970438 35970744 -246222920 + AluJb SINE Alu 1 308 -4 551 192 48 8 chr1 35970744 35970869 -246222795 + L1MEc LINE L1 3026 3155 -3060 428 174 283 0 chr1 35970872 35970964 -246222700 + FLAM_C SINE Alu 1 118 -15 858 161 45 19 chr1 35970970 35971125 -246222539 - FRAM SINE Alu -19 157 1 293 233 67 11 chr1 35971236 35971326 -246222338 + HAL1 LINE L1 2073 2167 -340 * 2466 208 19 95 chr1 35971301 35971376 -246222288 + L1MA8 LINE L1 5427 5506 -785 2103 136 3 3 chr1 35971376 35971684 -246221980 + AluSx SINE Alu 1 308 -4 2466 208 19 95 chr1 35971684 35972384 -246221280 + L1MA8 LINE L1 5506 6143 -148 1101 228 90 112 chr1 35972415 35972657 -246221007 + L1MC4 LINE L1 6914 7160 -882 2251 106 10 0 chr1 35972657 35972949 -246220715 - AluSq SINE Alu -18 295 1 1101 228 90 112 chr1 35972949 35973562 -246220102 + L1MC4 LINE L1 7160 7750 -292 24 32 0 0 chr1 35973562 35973593 -246220071 + AT_rich Low_complexity Low_complexity 1 31 0 728 252 148 13 chr1 35973661 35973979 -246219685 + L1ME4a LINE L1 5536 5896 -225 252 159 57 68 chr1 35974016 35974104 -246219560 + L1ME4a LINE L1 5973 6059 -62 679 361 30 12 chr1 35974104 35974148 -246219516 + L3 LINE CR1 1233 1275 -302 2225 99 26 0 chr1 35974148 35974452 -246219212 + AluSx SINE Alu 1 312 0 679 361 30 12 chr1 35974452 35974745 -246218919 + L3 LINE CR1 1275 1576 -1 265 289 258 21 chr1 35975587 35975777 -246217887 - MIR SINE MIR -26 236 2 1334 182 21 106 chr1 35976714 35977044 -246216620 - AluYb8 SINE Alu -16 302 1 1654 171 30 26 chr1 35978049 35978353 -246215311 + AluJo SINE Alu 1 305 -7 265 262 60 12 chr1 35978481 35978565 -246215099 - L2 LINE L2 -1352 1962 1875 22 80 0 13 chr1 35978784 35978796 -246214868 + AT_rich Low_complexity Low_complexity 1 12 -62 1517 194 20 3 chr1 35978796 35979089 -246214575 - AluJo SINE Alu -14 298 1 22 80 0 13 chr1 35979089 35979151 -246214513 + AT_rich Low_complexity Low_complexity 12 74 0 314 275 133 13 chr1 35979477 35979623 -246214041 - MIR SINE MIR -62 146 33 216 0 0 0 chr1 35980000 35980024 -246213640 + (A)n Simple_repeat Simple_repeat 1 24 0 2163 122 10 0 chr1 35980027 35980323 -246213341 + AluSx SINE Alu 1 299 -13 287 278 49 0 chr1 35980323 35980435 -246213229 - MIR SINE MIR -63 145 56 331 231 214 12 chr1 35980550 35980723 -246212941 - MIR SINE MIR -27 235 28 488 221 0 11 chr1 35980728 35980823 -246212841 + L1MC1 LINE L1 6180 6273 -60 701 288 213 17 chr1 35981842 35982245 -246211419 + L1MC4a LINE L1 5385 5866 -1942 418 284 18 71 chr1 35982747 35982916 -246210748 + MIR3 SINE MIR 16 175 -33 195 42 0 0 chr1 35982961 35982985 -246210679 + (TA)n Simple_repeat Simple_repeat 1 24 0 1172 188 4 4 chr1 35983028 35983257 -246210407 + AluJb SINE Alu 84 312 0 2498 56 0 26 chr1 35983586 35983891 -246209773 - AluY SINE Alu -14 297 1 284 330 45 0 chr1 35984681 35984793 -246208871 - MIR SINE MIR -134 128 12 213 328 62 0 chr1 35984805 35984869 -246208795 - MIR SINE MIR -162 100 33 1501 41 5 41 chr1 35985168 35985362 -246208302 - AluY SINE Alu -11 300 114 252 267 13 34 chr1 35985522 35985754 -246207910 + A-rich Low_complexity Low_complexity 1 226 0 672 165 0 0 chr1 35985765 35985880 -246207784 + AluSg/x SINE Alu 188 302 -10 453 36 0 0 chr1 35985886 35985941 -246207723 + (TG)n Simple_repeat Simple_repeat 2 56 0 2055 121 0 4 chr1 35985960 35986233 -246207431 + AluSx SINE Alu 2 273 -39 255 210 0 16 chr1 35986393 35986455 -246207209 + MIR3 SINE MIR 3 63 -145 181 261 43 0 chr1 35986653 35986699 -246206965 - L2 LINE L2 0 3313 3266 361 207 12 24 chr1 35986732 35986814 -246206850 - MIR3 SINE MIR -17 191 111 2261 106 10 0 chr1 35987727 35988030 -246205634 + AluSx SINE Alu 1 306 -6 2408 84 7 0 chr1 35988032 35988331 -246205333 + AluSq SINE Alu 1 301 -12 356 250 11 0 chr1 35989251 35989339 -246204325 + MIR SINE MIR 50 138 -70 432 313 157 30 chr1 35989626 35989888 -246203776 + L2 LINE L2 2978 3272 0 245 328 15 23 chr1 35990247 35990378 -246203286 - L2 LINE L2 -239 3033 2904 2082 100 0 75 chr1 35990532 35990708 -246202956 - AluSq SINE Alu -16 297 154 2228 105 0 16 chr1 35990708 35991013 -246202651 - AluSq SINE Alu -13 300 1 2082 100 0 75 chr1 35991013 35991157 -246202507 - AluSq SINE Alu -159 154 1 261 297 79 73 chr1 35991305 35991365 -246202299 - MIR3 SINE MIR -7 201 143 2284 91 37 0 chr1 35991365 35991661 -246202003 + AluSg SINE Alu 1 307 -3 261 297 79 73 chr1 35991661 35991765 -246201899 - MIR3 SINE MIR -65 143 36 233 330 57 28 chr1 35992118 35992224 -246201440 + L2 LINE L2 3204 3312 -1 * 254 214 180 0 chr1 35992223 35992312 -246201352 + MIR SINE MIR 79 183 -79 2623 64 0 3 chr1 35992580 35992892 -246200772 - AluY SINE Alu 0 311 1 504 247 31 25 chr1 35993086 35993248 -246200416 - MIR SINE MIR -41 221 59 2377 100 0 0 chr1 35993262 35993563 -246200101 - AluSg SINE Alu -9 301 1 2195 115 16 3 chr1 35993691 35993996 -246199668 - AluSx SINE Alu -3 309 1 269 153 153 0 chr1 35994234 35994306 -246199358 + MIR3 SINE MIR 101 183 -25 189 192 0 77 chr1 35994377 35994429 -246199235 + MIR SINE MIR 92 139 -69 22 70 0 0 chr1 35996696 35996739 -246196925 + GC_rich Low_complexity Low_complexity 1 43 0 38 108 0 0 chr1 35996816 35996973 -246196691 + GC_rich Low_complexity Low_complexity 1 157 0 282 209 23 39 chr1 35996983 35997112 -246196552 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 2267 113 7 3 chr1 35998620 35998922 -246194742 + AluSx SINE Alu 2 304 -8 1674 154 10 48 chr1 35998939 35999231 -246194433 + AluJb SINE Alu 1 281 -31 1585 183 30 8 chr1 35999410 35999678 -246193986 + AluJb SINE Alu 26 299 -13 916 143 148 123 chr1 35999678 35999793 -246193871 + Charlie1 DNA MER1_type 2165 2276 -485 2333 71 10 17 chr1 35999793 36000087 -246193577 + AluSx SINE Alu 1 292 -20 916 143 148 123 chr1 36000087 36000142 -246193522 + Charlie1 DNA MER1_type 2276 2328 -433 719 89 0 0 chr1 36000142 36000243 -246193421 - HY3 scRNA scRNA 0 101 1 916 143 148 123 chr1 36000243 36000419 -246193245 + Charlie1 DNA MER1_type 2328 2526 -235 1327 231 10 10 chr1 36000419 36000714 -246192950 - AluJo SINE Alu -15 297 3 916 143 148 123 chr1 36000714 36000756 -246192908 + Charlie1 DNA MER1_type 2526 2565 -196 546 176 0 88 chr1 36000777 36000872 -246192792 + FAM SINE Alu 1 6 -179 2201 137 0 10 chr1 36000872 36001178 -246192486 - AluSx SINE Alu -9 303 1 546 176 0 88 chr1 36001178 36001218 -246192446 + FAM SINE Alu 6 48 -1 637 185 23 17 chr1 36001219 36001257 -246192407 + Charlie1 DNA MER1_type 2555 2591 -170 1897 173 0 3 chr1 36001257 36001563 -246192101 - AluSx SINE Alu -7 305 1 637 185 23 17 chr1 36001563 36001697 -246191967 + Charlie1 DNA MER1_type 2591 2728 -33 1833 97 4 0 chr1 36001704 36001930 -246191734 + AluSc SINE Alu 1 227 -82 213 39 0 0 chr1 36001940 36001966 -246191698 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr1 36002020 36002057 -246191607 + AT_rich Low_complexity Low_complexity 1 37 0 1923 143 0 17 chr1 36002059 36002353 -246191311 + AluSx SINE Alu 3 291 -21 977 206 18 56 chr1 36002356 36002612 -246191052 - L1ME2 LINE L1 -16 6148 5903 2134 110 7 17 chr1 36002612 36002911 -246190753 - AluSg SINE Alu -14 296 1 977 206 18 56 chr1 36002911 36002940 -246190724 - L1ME2 LINE L1 -261 5903 5874 2426 177 103 21 chr1 36002943 36003469 -246190195 - MER67B LTR ERV1 0 661 93 256 160 20 0 chr1 36003610 36003660 -246190004 - Alu SINE Alu -248 51 1 2511 51 10 0 chr1 36006067 36006362 -246187302 + AluSp SINE Alu 1 298 -15 315 0 0 0 chr1 36006362 36006397 -246187267 + (TG)n Simple_repeat Simple_repeat 2 36 0 439 100 0 29 chr1 36006397 36006467 -246187197 - AluJ/FRAM SINE Alu -25 287 220 202 311 0 0 chr1 36006474 36006535 -246187129 + MIR SINE MIR 62 122 -86 2392 89 7 3 chr1 36006763 36007067 -246186597 + AluSx SINE Alu 1 305 -7 2173 98 10 17 chr1 36007067 36007362 -246186302 + AluSx SINE Alu 1 293 -19 906 269 78 58 chr1 36007509 36007996 -246185668 - L1ME2 LINE L1 -2021 5787 5291 3029 122 64 12 chr1 36008054 36008553 -246185111 - MER1A DNA MER1_type 0 527 3 1275 157 0 0 chr1 36008565 36008756 -246184908 - AluSg/x SINE Alu -1 311 121 1241 86 11 75 chr1 36008770 36008956 -246184708 - AluSp SINE Alu -138 175 2 2314 112 0 10 chr1 36008959 36009272 -246184392 - AluSg SINE Alu 0 310 1 617 192 120 0 chr1 36009337 36009462 -246184202 + MER58C DNA MER1_type 33 172 -43 2359 83 0 17 chr1 36009463 36009764 -246183900 - AluSg SINE Alu -14 296 1 1923 135 35 3 chr1 36010139 36010421 -246183243 - AluSq SINE Alu -22 291 1 234 267 103 35 chr1 36010479 36010595 -246183069 - MIR3 SINE MIR -27 181 58 186 103 0 0 chr1 36010739 36010768 -246182896 + (GGGGA)n Simple_repeat Simple_repeat 2 30 0 309 242 39 112 chr1 36012171 36012349 -246181315 - MIR3 SINE MIR -20 188 24 2217 115 0 16 chr1 36013967 36014271 -246179393 + AluSx SINE Alu 9 307 -5 313 234 0 53 chr1 36014347 36014441 -246179223 + L2 LINE L2 3184 3272 0 1526 192 4 4 chr1 36014571 36014837 -246178827 + AluJb SINE Alu 1 266 -46 2371 93 7 7 chr1 36014858 36015168 -246178496 + AluSx SINE Alu 1 310 -2 569 244 78 6 chr1 36015173 36015420 -246178244 - L2 LINE L2 -277 3036 2774 1056 133 0 7 chr1 36015448 36015598 -246178066 + AluSx SINE Alu 1 149 -163 639 185 0 0 chr1 36015889 36016008 -246177656 - AluSq/x SINE Alu -192 120 2 208 280 0 27 chr1 36016164 36016239 -246177425 + A-rich Low_complexity Low_complexity 2 74 0 2290 114 3 0 chr1 36016350 36016656 -246177008 + AluSx SINE Alu 1 307 -5 1024 121 0 42 chr1 36016659 36016825 -246176839 + AluSx SINE Alu 154 312 0 219 283 0 50 chr1 36016827 36016887 -246176777 - MIR SINE MIR -155 107 51 701 239 25 6 chr1 36016984 36017147 -246176517 + MER5A DNA MER1_type 24 189 0 1653 163 58 11 chr1 36017726 36018003 -246175661 + AluJo SINE Alu 1 290 -22 2292 101 0 25 chr1 36018008 36018325 -246175339 + AluSq SINE Alu 1 309 -4 1810 151 0 17 chr1 36018613 36018912 -246174752 - AluJb SINE Alu -18 294 1 2564 65 3 0 chr1 36019045 36019355 -246174309 + AluY SINE Alu 1 311 0 186 354 31 0 chr1 36020054 36020119 -246173545 + L2 LINE L2 3117 3183 -89 2234 95 0 16 chr1 36020153 36020458 -246173206 + AluSx SINE Alu 1 300 -12 548 180 63 0 chr1 36020517 36020628 -246173036 - AluJb SINE Alu -193 119 2 2501 51 10 0 chr1 36023035 36023329 -246170335 + AluSp SINE Alu 1 297 -16 306 0 0 0 chr1 36023329 36023363 -246170301 + (TG)n Simple_repeat Simple_repeat 2 35 0 420 103 0 29 chr1 36023363 36023431 -246170233 - AluJ/FRAM SINE Alu -27 285 220 202 311 0 0 chr1 36023438 36023499 -246170165 + MIR SINE MIR 62 122 -86 2383 89 7 3 chr1 36023727 36024030 -246169634 + AluSx SINE Alu 1 304 -8 2365 81 0 17 chr1 36024030 36024326 -246169338 + AluSx SINE Alu 1 291 -21 911 274 79 57 chr1 36024436 36024979 -246168685 - L1ME LINE L1 -331 5831 5271 3035 123 64 10 chr1 36025018 36025516 -246168148 - MER1A DNA MER1_type 0 527 3 903 223 0 0 chr1 36025536 36025702 -246167962 - FRAM SINE Alu 0 166 1 1256 81 11 75 chr1 36025724 36025910 -246167754 - AluSp SINE Alu -138 175 2 2338 104 0 16 chr1 36025917 36026234 -246167430 - AluSx SINE Alu 0 312 1 2146 58 0 4 chr1 36026350 36026608 -246167056 + AluY SINE Alu 51 307 -4 1997 148 10 10 chr1 36026652 36026949 -246166715 - AluSx SINE Alu -15 297 1 318 235 141 0 chr1 36026959 36027044 -246166620 - L1ME3A LINE L1 -9 6161 6065 813 186 32 0 chr1 36027049 36027205 -246166459 + Charlie1a DNA MER1_type 6 166 -1289 633 147 0 78 chr1 36027211 36027340 -246166324 + FRAM SINE Alu 20 138 -38 347 150 0 50 chr1 36027356 36027436 -246166228 + AluJ/FRAM SINE Alu 227 302 0 1632 189 0 14 chr1 36027486 36027771 -246165893 - AluJo SINE Alu -31 281 1 2414 83 0 0 chr1 36027798 36028088 -246165576 - AluSc SINE Alu -19 290 1 30 0 0 0 chr1 36028091 36028121 -246165543 + AT_rich Low_complexity Low_complexity 1 30 0 1525 187 16 44 chr1 36028144 36028459 -246165205 + AluJo SINE Alu 3 308 -4 1135 150 85 98 chr1 36028483 36028522 -246165142 + AluJb SINE Alu 9 47 -265 4212 50 7 4 chr1 36028522 36029078 -246164586 + LTR6B LTR ERV1 1 558 0 1135 150 85 98 chr1 36029078 36029193 -246164471 + AluJb SINE Alu 47 162 -150 2098 91 0 4 chr1 36029193 36029458 -246164206 + AluSg SINE Alu 1 264 -46 1135 150 85 98 chr1 36029458 36029609 -246164055 + AluJb SINE Alu 162 311 -1 2300 106 0 7 chr1 36029614 36029917 -246163747 + AluSp SINE Alu 1 301 -12 2153 116 3 3 chr1 36029917 36030210 -246163454 + AluSx SINE Alu 1 293 -19 2405 65 0 7 chr1 36030219 36030511 -246163153 + AluSc SINE Alu 1 290 -19 2502 64 0 3 chr1 36030779 36031074 -246162590 - AluSx SINE Alu -18 294 1 431 324 85 21 chr1 36031074 36031355 -246162309 + L3 LINE CR1 613 911 -666 295 282 179 8 chr1 36031339 36031456 -246162208 - L2 LINE L2 -9 3263 3127 * 325 222 60 43 chr1 36031496 36031613 -246162051 + L1MCa LINE L1 2000 2118 -4308 2004 131 3 36 chr1 36031938 36032244 -246161420 + AluJo SINE Alu 2 297 -15 745 188 171 6 chr1 36032301 36032477 -246161187 + MER3 DNA MER1_type 5 209 0 2265 94 3 3 chr1 36032644 36032932 -246160732 + AluSg SINE Alu 1 288 -22 910 161 0 0 chr1 36033097 36033234 -246160430 + FLAM_C SINE Alu 1 137 -6 197 323 120 30 chr1 36033239 36033348 -246160316 - MIR SINE MIR -82 126 10 1700 145 59 38 chr1 36034148 36034437 -246159227 + AluJb SINE Alu 1 295 -17 842 130 0 36 chr1 36034678 36034816 -246158848 - FLAM_C SINE Alu 0 133 1 213 269 97 43 chr1 36036397 36036490 -246157174 - MIR SINE MIR -162 100 3 2581 73 0 3 chr1 36037213 36037526 -246156138 + AluSq SINE Alu 1 312 -1 2301 108 7 3 chr1 36037546 36037853 -246155811 + AluY SINE Alu 1 308 -3 365 261 42 34 chr1 36037979 36038098 -246155566 - L2 LINE L2 0 3313 3194 266 185 222 37 chr1 36038260 36038395 -246155269 - L1ME4a LINE L1 -1 6120 5961 638 233 0 63 chr1 36038448 36038607 -246155057 - FRAM SINE Alu -17 149 1 2371 119 0 0 chr1 36038612 36038924 -246154740 - AluSx SINE Alu 0 312 1 289 300 15 62 chr1 36039749 36039879 -246153785 - MER5A DNA MER1_type -4 185 62 1556 55 0 25 chr1 36039905 36040104 -246153560 - AluY SINE Alu -5 306 113 1856 121 35 14 chr1 36040205 36040512 -246153152 + AluSq SINE Alu 1 313 0 1094 112 39 22 chr1 36040512 36040691 -246152973 + AluSg/x SINE Alu 131 312 0 2238 118 7 0 chr1 36040694 36040999 -246152665 + AluSc SINE Alu 3 309 0 2531 121 26 18 chr1 36041000 36041283 -246152381 + L1P4 LINE L1 5317 5607 -559 2102 123 27 0 chr1 36041283 36041584 -246152080 + AluSp SINE Alu 1 309 -4 2531 121 26 18 chr1 36041584 36041755 -246151909 + L1P4 LINE L1 5607 5775 -391 1698 192 0 13 chr1 36041762 36042064 -246151600 + AluJb SINE Alu 1 298 -14 1513 137 26 26 chr1 36042198 36042468 -246151196 + AluSx SINE Alu 40 309 -3 715 212 34 0 chr1 36042469 36042615 -246151049 + AluJo/FRAM SINE Alu 138 288 -14 371 290 85 14 chr1 36042833 36042988 -246150676 + L1MC/D LINE L1 5490 5653 -484 255 270 212 0 chr1 36043008 36043145 -246150519 + L1MC/D LINE L1 5721 5886 -1922 2198 114 3 13 chr1 36043290 36043597 -246150067 - AluSq SINE Alu -9 304 1 289 300 15 62 chr1 36044422 36044552 -246149112 - MER5A DNA MER1_type -4 185 62 2514 67 0 19 chr1 36044578 36044890 -246148774 - AluY SINE Alu -5 306 1 189 0 0 0 chr1 36044914 36044935 -246148729 + (A)n Simple_repeat Simple_repeat 1 21 0 2295 91 3 0 chr1 36044940 36045226 -246148438 + AluSq SINE Alu 7 293 -20 2378 100 0 3 chr1 36045227 36045528 -246148136 + AluSx SINE Alu 1 300 -12 231 216 20 0 chr1 36045528 36045579 -246148085 - MER5A DNA MER1_type -61 128 77 373 246 181 47 chr1 36045771 36045986 -246147678 + L1ME LINE L1 5580 5823 -298 1600 195 0 4 chr1 36046002 36046264 -246147400 + AluJb SINE Alu 12 272 -40 1367 207 7 29 chr1 36046276 36046387 -246147277 + AluJo SINE Alu 27 139 -173 2285 78 11 3 chr1 36046387 36046697 -246146967 + AluSp SINE Alu 2 313 0 1367 207 7 29 chr1 36046697 36046859 -246146805 + AluJo SINE Alu 139 295 -17 1669 165 34 0 chr1 36047016 36047282 -246146382 - AluJb SINE Alu -37 275 1 2396 70 0 17 chr1 36047305 36047603 -246146061 + AluY SINE Alu 3 295 -16 1776 149 11 8 chr1 36047692 36047954 -246145710 + AluJb SINE Alu 6 268 -44 622 97 53 26 chr1 36049096 36049210 -246144454 + MER47A DNA MER2_type 45 161 -205 1069 168 40 15 chr1 36049231 36049433 -246144231 + AluSp SINE Alu 1 207 -106 22 70 0 0 chr1 36049917 36049960 -246143704 + GC_rich Low_complexity Low_complexity 1 43 0 37 109 0 0 chr1 36050037 36050193 -246143471 + GC_rich Low_complexity Low_complexity 1 156 0 282 209 23 39 chr1 36050203 36050332 -246143332 + (CGGGG)n Simple_repeat Simple_repeat 2 128 0 1881 89 20 0 chr1 36050858 36051104 -246142560 + AluSq SINE Alu 53 303 -10 2412 73 39 25 chr1 36051104 36051439 -246142225 + MER4D LTR ERV1 511 853 -19 2085 145 0 3 chr1 36051439 36051735 -246141929 - AluSx SINE Alu -17 295 1 2412 73 39 25 chr1 36051735 36051756 -246141908 + MER4D LTR ERV1 853 872 0 348 309 233 37 chr1 36051769 36052507 -246141157 + L2 LINE L2 1753 2676 -638 2116 141 3 0 chr1 36052507 36052805 -246140859 - AluSx SINE Alu -13 299 1 348 309 233 37 chr1 36052805 36052904 -246140760 + L2 LINE L2 2676 2754 -560 2195 114 3 16 chr1 36053183 36053491 -246140173 + AluSq SINE Alu 1 304 -9 2005 170 45 2 chr1 36053623 36053943 -246139721 + L1MB7 LINE L1 5728 6072 -112 2562 53 0 0 chr1 36053943 36054245 -246139419 + AluY SINE Alu 1 302 -9 2005 170 45 2 chr1 36054245 36054348 -246139316 + L1MB7 LINE L1 6072 6169 -15 262 303 96 32 chr1 36054472 36054660 -246139004 - L2 LINE L2 -140 3173 2974 248 208 0 0 chr1 36054833 36054881 -246138783 + L2 LINE L2 3004 3051 -221 187 195 0 24 chr1 36054994 36055035 -246138629 + L2 LINE L2 3243 3282 -31 2052 141 13 0 chr1 36057401 36057707 -246135957 + AluSx SINE Alu 1 310 -2 2350 93 3 7 chr1 36058260 36058560 -246135104 - AluSc SINE Alu -10 299 1 241 160 20 0 chr1 36058560 36058610 -246135054 + MER58 DNA MER1_type 2370 2420 0 2447 91 0 0 chr1 36058738 36059046 -246134618 - AluY SINE Alu -2 309 2 2423 85 10 0 chr1 36059056 36059361 -246134303 - AluSx SINE Alu -4 308 1 928 291 100 46 chr1 36059383 36059770 -246133894 - L1MEc LINE L1 -4574 1822 1457 1710 178 24 10 chr1 36059770 36060068 -246133596 - AluJb SINE Alu -10 302 1 928 291 100 46 chr1 36060068 36060499 -246133165 - L1MEc LINE L1 -4939 1457 942 2312 74 35 0 chr1 36060499 36060820 -246132844 - AluY SINE Alu 0 311 1 928 291 100 46 chr1 36060820 36060961 -246132703 - L1MEc LINE L1 -5454 942 810 2477 99 0 0 chr1 36061596 36061909 -246131755 - AluSq SINE Alu 0 313 1 274 308 15 62 chr1 36062734 36062864 -246130800 - MER5A DNA MER1_type -4 185 62 2514 67 0 19 chr1 36062890 36063202 -246130462 - AluY SINE Alu -5 306 1 443 145 26 0 chr1 36063303 36063379 -246130285 - AluS SINE Alu -233 79 2 2417 86 7 0 chr1 36063416 36063717 -246129947 + AluSc SINE Alu 1 303 -6 2443 91 0 0 chr1 36063727 36064035 -246129629 + AluY SINE Alu 2 309 -2 743 181 90 57 chr1 36064163 36064213 -246129451 - MER58C DNA MER1_type -2205 215 168 2340 94 0 7 chr1 36064213 36064510 -246129154 + AluSc SINE Alu 1 295 -14 743 181 90 57 chr1 36064510 36064636 -246129028 - MER58C DNA MER1_type -2252 168 33 2229 129 0 10 chr1 36064701 36065012 -246128652 + AluSg SINE Alu 1 308 -2 1882 147 29 19 chr1 36065045 36065352 -246128312 - AluJo SINE Alu -2 310 1 2455 99 0 3 chr1 36065371 36065685 -246127979 + AluSq SINE Alu 1 313 0 243 0 0 0 chr1 36065685 36065712 -246127952 + (TA)n Simple_repeat Simple_repeat 1 27 0 1834 195 0 0 chr1 36065751 36066058 -246127606 + AluJo SINE Alu 1 307 -5 387 228 65 32 chr1 36066196 36066319 -246127345 + MIR SINE MIR 25 151 -111 2081 129 0 3 chr1 36066539 36066833 -246126831 - AluSx SINE Alu -19 293 1 1487 150 67 33 chr1 36067218 36067518 -246126146 + AluJb SINE Alu 3 312 0 258 319 108 88 chr1 36067518 36067951 -246125713 - L2 LINE L2 -17 3255 2814 515 226 215 34 chr1 36068274 36068451 -246125213 + MER3 DNA MER1_type 1 209 0 619 159 93 0 chr1 36068513 36068620 -246125044 - FLAM_C SINE Alu -16 117 1 2103 142 0 3 chr1 36068648 36068943 -246124721 - AluSx SINE Alu -18 294 1 546 136 0 0 chr1 36069099 36069180 -246124484 - AluSg1 SINE Alu -219 90 10 2222 103 3 0 chr1 36069206 36069488 -246124176 + AluSp SINE Alu 16 298 -15 2231 107 0 3 chr1 36069544 36069835 -246123829 - AluY SINE Alu -20 291 2 329 265 128 51 chr1 36069836 36070070 -246123594 - L1ME LINE L1 -349 5772 5521 2317 82 3 17 chr1 36070075 36070369 -246123295 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 36071660 36071695 -246121969 + AT_rich Low_complexity Low_complexity 1 35 0 319 194 45 0 chr1 36076946 36077013 -246116651 + MER103 DNA DNA 3 72 -94 319 233 115 51 chr1 36077047 36077217 -246116447 - MIR SINE MIR 0 262 69 2800 13 0 0 chr1 36077249 36077548 -246116116 - AluYa5 SINE Alu -12 299 1 9859 115 46 50 chr1 36077548 36078123 -246115541 - Tigger1 DNA MER2_type -688 1730 1154 2063 109 0 67 chr1 36078123 36078280 -246115384 - AluSx SINE Alu -21 291 164 2256 108 10 0 chr1 36078280 36078577 -246115087 - AluSg SINE Alu -10 300 1 2063 109 0 67 chr1 36078577 36078731 -246114933 - AluSx SINE Alu -148 164 1 9859 115 46 50 chr1 36078731 36079038 -246114626 - Tigger1 DNA MER2_type -1264 1154 847 10273 53 5 106 chr1 36079038 36080575 -246113089 - SVA Other Other -4 1382 1 9859 115 46 50 chr1 36080575 36080979 -246112685 - Tigger1 DNA MER2_type -1571 847 443 2376 86 0 10 chr1 36080979 36081282 -246112382 + AluSg1 SINE Alu 1 300 -9 9859 115 46 50 chr1 36081282 36081728 -246111936 - Tigger1 DNA MER2_type -1975 443 1 1268 241 60 62 chr1 36082020 36082122 -246111542 + LTR38 LTR ERV1 61 162 -394 881 121 87 7 chr1 36082122 36082271 -246111393 + L1PA15 LINE L1 6005 6165 0 1268 241 60 62 chr1 36082271 36082665 -246110999 + LTR38 LTR ERV1 162 556 0 1779 184 0 3 chr1 36082746 36083039 -246110625 - AluJb SINE Alu 0 312 21 260 289 8 47 chr1 36083088 36083216 -246110448 - L1MEd LINE L1 -4908 1211 1089 1799 167 24 3 chr1 36083216 36083504 -246110160 - AluJo SINE Alu -17 295 2 2215 79 68 0 chr1 36083523 36083802 -246109862 - AluSx SINE Alu -14 298 1 371 317 0 0 chr1 36083892 36083993 -246109671 + L2 LINE L2 3199 3299 -14 * 857 311 47 3 chr1 36083986 36084304 -246109360 + L2 LINE L2 2979 3310 -3 2134 147 0 6 chr1 36084377 36084690 -246108974 - AluSx SINE Alu -1 311 1 743 196 0 0 chr1 36084705 36084838 -246108826 - FLAM_C SINE Alu 0 133 1 288 270 173 30 chr1 36084906 36085082 -246108582 + MIR SINE MIR 16 211 -51 2292 114 0 0 chr1 36085126 36085424 -246108240 + AluSq SINE Alu 1 298 -15 297 311 76 8 chr1 36085613 36085732 -246107932 + L2 LINE L2 3142 3268 -4 3898 105 4 4 chr1 36086505 36087068 -246106596 + LTR6A LTR ERV1 1 563 -1 3131 88 8 42 chr1 36087169 36087324 -246106340 + MER4D LTR ERV1 2 161 -711 1554 183 35 3 chr1 36087324 36087613 -246106051 - AluJb SINE Alu -12 300 3 3131 88 8 42 chr1 36087613 36087957 -246105707 + MER4D LTR ERV1 161 484 -388 261 105 0 0 chr1 36288009 36288047 -245905617 - L1MA3 LINE L1 -5 6300 6263 1011 158 15 71 chr1 36288212 36288287 -245905377 + MER5A DNA MER1_type 2 80 -109 2300 100 0 3 chr1 36288287 36288597 -245905067 + AluSq SINE Alu 1 309 -4 1011 158 15 71 chr1 36288597 36288717 -245904947 + MER5A DNA MER1_type 80 186 -3 698 216 30 0 chr1 36289261 36289395 -245904269 + MIR SINE MIR 47 184 -78 458 221 66 33 chr1 36289420 36289542 -245904122 + MIR SINE MIR 68 193 -69 2140 107 13 10 chr1 36289543 36289853 -245903811 - AluSx SINE Alu -1 311 1 516 271 29 29 chr1 36290027 36290197 -245903467 + MIR SINE MIR 2 171 -91 3788 253 125 39 chr1 36290328 36292129 -245901535 + L2 LINE L2 1275 3270 -43 316 291 7 78 chr1 36292181 36292233 -245901431 + MIR SINE MIR 117 171 -91 2307 101 0 0 chr1 36292233 36292539 -245901125 - AluSg SINE Alu -4 306 1 316 291 7 78 chr1 36292539 36292627 -245901037 + MIR SINE MIR 171 247 -15 421 298 14 35 chr1 36293011 36293152 -245900512 + MIR SINE MIR 108 245 -17 392 270 60 76 chr1 36293222 36293314 -245900350 + MIR SINE MIR 32 121 -141 2353 83 3 13 chr1 36293314 36293627 -245900037 - AluSq SINE Alu -2 311 2 392 270 60 76 chr1 36293627 36293719 -245899945 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36293747 36293781 -245899883 + AT_rich Low_complexity Low_complexity 1 34 0 202 139 0 93 chr1 36294027 36294070 -245899594 + L2 LINE L2 3233 3271 -1 260 365 91 15 chr1 36294614 36294811 -245898853 - L2 LINE L2 -683 2631 2420 4007 126 44 16 chr1 36294864 36294875 -245898789 - L1MC1 LINE L1 -429 5904 5895 2028 129 0 7 chr1 36294875 36295185 -245898479 - AluSq SINE Alu -1 312 5 4007 126 44 16 chr1 36295185 36295863 -245897801 - L1MC1 LINE L1 -438 5895 5186 2123 116 0 13 chr1 36295863 36296173 -245897491 - AluSx SINE Alu -4 308 3 4007 126 44 16 chr1 36296173 36296262 -245897402 - L1MC1 LINE L1 -1147 5186 5101 592 260 68 7 chr1 36296275 36296421 -245897243 + L2 LINE L2 3112 3266 -47 1362 252 144 54 chr1 36296533 36297323 -245896341 + L1MEd LINE L1 285 1145 -4974 262 167 10 128 chr1 36297327 36297429 -245896235 - LTR50 LTR ERVL -17 771 667 434 305 17 0 chr1 36297700 36297818 -245895846 + MIR3 SINE MIR 68 187 -21 1298 278 88 10 chr1 36298153 36298639 -245895025 + L1ME2 LINE L1 5369 5892 -272 22 35 0 0 chr1 36298672 36298701 -245894963 + AT_rich Low_complexity Low_complexity 1 29 0 395 195 54 163 chr1 36298902 36299103 -245894561 + L1MC5 LINE L1 7324 7545 -416 666 233 0 0 chr1 36299103 36299236 -245894428 + FLAM_C SINE Alu 1 133 0 395 195 54 163 chr1 36299236 36299281 -245894383 + L1MC5 LINE L1 7545 7593 -368 2047 120 0 3 chr1 36299281 36299573 -245894091 + AluSx SINE Alu 2 292 -20 395 195 54 163 chr1 36299573 36299786 -245893878 + L1MC5 LINE L1 7593 7734 -227 225 0 0 0 chr1 36299853 36299878 -245893786 + (CA)n Simple_repeat Simple_repeat 1 25 0 2091 132 3 0 chr1 36300092 36300403 -245893261 - AluSx SINE Alu 0 312 1 1997 129 0 3 chr1 36301378 36301672 -245891992 + AluSx SINE Alu 1 293 -19 285 216 167 10 chr1 36301966 36302068 -245891596 + L1ME4a LINE L1 5816 5933 -188 308 330 0 11 chr1 36302662 36302753 -245890911 - MIR SINE MIR -81 127 38 428 262 19 9 chr1 36303029 36303136 -245890528 + MIR SINE MIR 36 143 -119 437 244 92 43 chr1 36303188 36303352 -245890312 + MIR SINE MIR 8 179 -83 226 214 43 51 chr1 36304056 36304067 -245889597 - HAL1b LINE L1 -1 1347 592 2877 121 2 46 chr1 36304067 36304305 -245889359 + Tigger2a DNA MER2_type 1 211 -2497 2086 123 0 0 chr1 36304305 36304597 -245889067 + AluSx SINE Alu 1 292 -20 2877 121 2 46 chr1 36304597 36304812 -245888852 + Tigger2a DNA MER2_type 211 434 0 382 226 165 26 chr1 36304812 36305042 -245888622 - L1ME4a LINE L1 -21 6100 1232 224 246 0 72 chr1 36305519 36305588 -245888076 + MIR SINE MIR 89 152 -110 243 342 18 9 chr1 36305997 36306108 -245887556 - MIR SINE MIR -65 143 32 362 278 150 9 chr1 36306133 36306327 -245887337 + MIR SINE MIR 34 250 -12 1901 156 6 13 chr1 36306408 36306722 -245886942 + AluJo SINE Alu 1 312 0 283 316 160 11 chr1 36307692 36307879 -245885785 + L2 LINE L2 2840 3054 -218 211 191 0 56 chr1 36308059 36308194 -245885470 + (CAGCC)n Simple_repeat Simple_repeat 1 127 0 418 237 4 185 chr1 36308575 36308807 -245884857 + MER91B DNA MER1_type 1 190 0 4423 99 25 34 chr1 36308864 36308910 -245884754 + L1MA8 LINE L1 5570 5615 -676 1827 151 0 0 chr1 36308910 36309194 -245884470 + AluSx SINE Alu 5 288 -24 4423 99 25 34 chr1 36309194 36309873 -245883791 + L1MA8 LINE L1 5615 6288 -3 419 267 149 56 chr1 36310118 36310166 -245883498 - MIR SINE MIR -14 248 206 1054 219 37 0 chr1 36310166 36310381 -245883283 - MER58A DNA MER1_type 0 224 2 419 267 149 56 chr1 36310381 36310527 -245883137 - MIR SINE MIR -56 206 36 397 311 122 0 chr1 36310655 36310819 -245882845 - MIR SINE MIR -56 206 23 23 0 0 0 chr1 36310976 36310999 -245882665 + AT_rich Low_complexity Low_complexity 1 23 0 819 145 0 15 chr1 36310999 36311130 -245882534 - FLAM_C SINE Alu -14 129 1 21 0 0 0 chr1 36311130 36311151 -245882513 + AT_rich Low_complexity Low_complexity 1 21 0 612 276 191 5 chr1 36311158 36311368 -245882296 - MIR SINE MIR -12 250 2 521 301 198 47 chr1 36311399 36312440 -245881224 - L2 LINE L2 -18 3295 2090 2111 107 0 3 chr1 36312710 36313000 -245880664 + AluSg SINE Alu 1 289 -21 2242 86 7 0 chr1 36313013 36313315 -245880349 + AluSp SINE Alu 1 304 -9 259 263 22 80 chr1 36313595 36313732 -245879932 - L1ME3A LINE L1 -77 6093 5965 783 281 95 28 chr1 36313863 36314330 -245879334 - L1ME3A LINE L1 -353 5809 5300 403 221 14 107 chr1 36314634 36314672 -245878992 - MIR SINE MIR -33 229 189 2087 121 0 13 chr1 36314672 36314850 -245878814 - AluSg SINE Alu -1 309 135 1974 130 7 3 chr1 36314850 36315150 -245878514 - AluSg SINE Alu -9 301 1 2087 121 0 13 chr1 36315150 36315284 -245878380 - AluSg SINE Alu -175 135 1 403 221 14 107 chr1 36315284 36315385 -245878279 - MIR SINE MIR -73 189 103 1060 246 188 34 chr1 36315418 36315930 -245877734 - L2 LINE L2 0 3313 2741 826 171 201 0 chr1 36317104 36317268 -245876396 + L1MB7 LINE L1 5929 6125 -59 2332 65 0 0 chr1 36317279 36317570 -245876094 - AluY SINE Alu -20 291 1 2001 107 48 0 chr1 36317570 36317860 -245875804 - AluSq SINE Alu -9 304 1 350 164 74 59 chr1 36318032 36318133 -245875531 + MIR SINE MIR 73 172 -63 2043 121 3 0 chr1 36318340 36318629 -245875035 + AluSx SINE Alu 1 290 -22 667 193 0 36 chr1 36318998 36319138 -245874526 + L2 LINE L2 3179 3313 0 536 308 139 51 chr1 36319449 36319858 -245873806 - L2 LINE L2 0 3272 2828 265 245 118 10 chr1 36320015 36320117 -245873547 + MIR SINE MIR 68 180 -82 1084 222 10 5 chr1 36320442 36320649 -245873015 - MIR SINE MIR -25 237 30 366 283 143 26 chr1 36321412 36321642 -245872022 - L2 LINE L2 -457 2857 2601 218 333 0 67 chr1 36321622 36321757 -245871907 + MIR SINE MIR 80 205 -57 * 204 250 104 0 chr1 36321856 36321904 -245871760 - MIR SINE MIR -145 117 65 215 276 40 0 chr1 36322236 36322312 -245871352 - L2 LINE L2 -601 2713 2635 658 291 62 26 chr1 36322538 36322765 -245870899 + MIR SINE MIR 22 256 -6 720 179 160 66 chr1 36324150 36324203 -245869461 - L1MB7 LINE L1 -20 6233 6186 1942 114 6 50 chr1 36324203 36324520 -245869144 + AluSx SINE Alu 3 305 -7 720 179 160 66 chr1 36324520 36324678 -245868986 - L1MB7 LINE L1 -67 6186 6002 8492 61 6 1 chr1 36324979 36326869 -245866795 + L1PA6 LINE L1 4223 6141 -13 3384 198 102 105 chr1 36326880 36327207 -245866457 - L1MB7 LINE L1 -743 5472 5145 996 225 0 0 chr1 36327207 36327380 -245866284 - FAM SINE Alu -2 173 1 3384 198 102 105 chr1 36327380 36327894 -245865770 - L1MB7 LINE L1 -1070 5145 4631 2025 134 0 7 chr1 36327894 36328201 -245865463 - AluSx SINE Alu -7 305 1 3384 198 102 105 chr1 36328201 36328334 -245865330 - L1MB7 LINE L1 -1584 4631 4499 1685 182 0 3 chr1 36328334 36328631 -245865033 - AluJo SINE Alu -16 296 1 3384 198 102 105 chr1 36328631 36329202 -245864462 - L1MB7 LINE L1 -1716 4499 4053 * 5220 168 23 25 chr1 36329189 36330975 -245862689 + L1MA9 LINE L1 4480 6274 -38 5169 232 57 19 chr1 36330995 36331223 -245862441 - L1MB7 LINE L1 -2140 4075 3857 2268 64 10 7 chr1 36331223 36331519 -245862145 - AluY SINE Alu -14 297 1 5169 232 57 19 chr1 36331519 36332701 -245860963 - L1MB7 LINE L1 -2358 3857 2535 2129 135 68 14 chr1 36332701 36333071 -245860593 - MLT1B LTR MaLR 0 390 1 5169 232 57 19 chr1 36333071 36333469 -245860195 - L1MB7 LINE L1 -3680 2535 2154 722 164 0 52 chr1 36333479 36333613 -245860051 - FRAM SINE Alu -8 168 42 3715 233 34 33 chr1 36333656 36333777 -245859887 - L1MEc LINE L1 -4366 2030 1911 1987 104 18 0 chr1 36333777 36334098 -245859566 - AluSq SINE Alu 0 326 1 3715 233 34 33 chr1 36334098 36335140 -245858524 - L1MEc LINE L1 -4485 1911 865 1810 168 0 13 chr1 36335147 36335450 -245858214 - AluJb SINE Alu -13 299 1 598 158 62 89 chr1 36335462 36335608 -245858056 - FLAM_C SINE Alu 0 143 2 2727 232 87 6 chr1 36335609 36336307 -245857357 - L1MEc LINE L1 -5528 868 114 757 140 18 0 chr1 36336307 36336421 -245857243 + Tigger3b DNA MER2_type 2 117 -1114 2389 185 35 78 chr1 36336421 36336998 -245856666 - MLT2B3 LTR ERVL 0 554 3 * 6591 111 24 12 chr1 36336998 36337404 -245856260 + Tigger3b DNA MER2_type 119 519 -2509 2091 116 0 0 chr1 36337404 36337736 -245855928 - AluSx SINE Alu 0 332 1 6591 111 24 12 chr1 36337736 36338356 -245855308 + Tigger3b DNA MER2_type 519 1158 -73 2062 88 0 0 chr1 36338421 36338670 -245854994 - AluSg SINE Alu -61 249 1 393 121 0 0 chr1 36338956 36339023 -245854641 - Alu SINE Alu -247 53 1 547 296 165 19 chr1 36339061 36339328 -245854336 + L2 LINE L2 2918 3223 -49 212 286 18 0 chr1 36339386 36339442 -245854222 + L2 LINE L2 3256 3312 -1 * 287 265 57 11 chr1 36339440 36339528 -245854136 + MIR SINE MIR 76 166 -55 1120 181 9 18 chr1 36339578 36339799 -245853865 - MER20 DNA MER1_type 0 219 1 472 284 91 25 chr1 36340366 36340563 -245853101 + MIR SINE MIR 53 262 0 2485 88 0 3 chr1 36340597 36340905 -245852759 - AluSp SINE Alu -6 307 1 265 229 56 108 chr1 36340948 36341141 -245852523 + MIR SINE MIR 20 212 -50 243 306 20 61 chr1 36343265 36343412 -245850252 - L2 LINE L2 -33 3239 3099 1887 174 0 0 chr1 36343434 36343715 -245849949 + AluJo SINE Alu 1 281 -31 2067 147 0 3 chr1 36343741 36344041 -245849623 + AluSx SINE Alu 7 305 -7 480 288 33 0 chr1 36344220 36344373 -245849291 + MIR3 SINE MIR 2 159 -49 1780 213 121 65 chr1 36344378 36345098 -245848566 - MER20B DNA MER1_type -3 780 21 185 245 0 0 chr1 36345099 36345148 -245848516 + MIR3 SINE MIR 154 202 -6 243 267 163 0 chr1 36345161 36345247 -245848417 - L2 LINE L2 -5 3267 3168 327 190 140 20 chr1 36345260 36345360 -245848304 - MIR3 SINE MIR -27 181 70 277 331 140 0 chr1 36346058 36346215 -245847449 + MIR3 SINE MIR 23 201 -7 389 359 145 15 chr1 36346923 36347316 -245846348 - LTR67 LTR ERVL 0 557 114 361 294 31 55 chr1 36347826 36347989 -245845675 - MIR SINE MIR -36 226 68 419 311 62 6 chr1 36348096 36348257 -245845407 + MIR SINE MIR 13 182 -80 2693 177 39 7 chr1 36348528 36348753 -245844911 - LTR64 LTR ERVK 0 558 342 2328 72 10 7 chr1 36348753 36349046 -245844618 + AluSp SINE Alu 3 296 -17 2693 177 39 7 chr1 36349046 36349361 -245844303 - LTR64 LTR ERVK -216 342 1 229 301 63 28 chr1 36350234 36350401 -245843263 - MIR SINE MIR -70 192 5 291 281 22 82 chr1 36350587 36350722 -245842942 + MIR3 SINE MIR 82 208 0 742 77 10 0 chr1 36351326 36351430 -245842234 - L1PA10 LINE L1 -3 6165 6061 357 250 213 0 chr1 36351671 36351807 -245841857 - MIR3 SINE MIR -13 195 31 221 236 181 24 chr1 36352093 36352220 -245841444 - MIR3 SINE MIR -41 167 21 258 280 51 34 chr1 36352882 36353000 -245840664 + MIR SINE MIR 30 149 -59 293 365 19 0 chr1 36354240 36354396 -245839268 + L2 LINE L2 2226 2384 -930 411 353 68 23 chr1 36354396 36354865 -245838799 + L2 LINE L2 2685 3270 -2 475 263 36 7 chr1 36355135 36355272 -245838392 + MIR SINE MIR 24 164 -98 2506 96 0 0 chr1 36355304 36355616 -245838048 - AluSq SINE Alu -1 312 1 184 298 21 0 chr1 36355643 36355690 -245837974 - L2 LINE L2 -20 3252 3205 180 293 17 17 chr1 36356499 36356557 -245837107 - MIR SINE MIR -108 100 43 328 263 74 11 chr1 36356746 36356841 -245836823 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36356861 36356889 -245836775 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36357045 36357072 -245836592 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1674 169 0 41 chr1 36357072 36357367 -245836297 - AluJo SINE Alu -27 285 3 208 261 22 43 chr1 36357971 36358063 -245835601 + L2 LINE L2 2490 2579 -735 3215 121 33 23 chr1 36358166 36358688 -245834976 + MER1A DNA MER1_type 1 527 0 797 264 25 17 chr1 36358734 36358969 -245834695 - MIR SINE MIR -8 254 18 1059 171 26 18 chr1 36359019 36359247 -245834417 + MER96B DNA MER1_type? 133 362 -55 761 294 84 15 chr1 36359253 36359644 -245834020 + L2 LINE L2 2835 3252 -61 185 246 88 0 chr1 36360009 36360066 -245833598 - MIR3 SINE MIR -19 189 128 741 259 116 12 chr1 36360144 36360403 -245833261 - L2 LINE L2 -2 3311 3026 457 216 22 86 chr1 36360479 36360618 -245833046 + MLT1J LTR MaLR 262 391 -120 581 234 7 22 chr1 36360689 36360826 -245832838 + MER63A DNA MER1_type 72 206 -4 316 304 136 59 chr1 36361495 36361936 -245831728 + L2 LINE L2 2373 2847 -467 871 191 106 0 chr1 36361946 36362134 -245831530 - MER3 DNA MER1_type -1 208 1 192 250 0 0 chr1 36362175 36362219 -245831445 + L2 LINE L2 2998 3041 -231 1936 123 31 24 chr1 36362319 36362612 -245831052 + AluSx SINE Alu 1 295 -17 311 172 0 0 chr1 36362629 36362687 -245830977 + Alu SINE Alu 245 302 0 235 191 24 0 chr1 36362687 36362729 -245830935 + L2 LINE L2 3141 3183 -89 586 228 66 56 chr1 36363015 36363212 -245830452 + MIR SINE MIR 44 242 -20 328 307 22 0 chr1 36363311 36363448 -245830216 - MIR3 SINE MIR -15 193 54 635 257 59 21 chr1 36363592 36363779 -245829885 - MIR SINE MIR -56 206 13 188 310 17 0 chr1 36363802 36363860 -245829804 - L2 LINE L2 -4 3309 3251 300 235 80 123 chr1 36364013 36364053 -245829611 + MIR SINE MIR 108 148 -114 2235 128 0 0 chr1 36364053 36364358 -245829306 - AluSx SINE Alu -7 305 1 300 235 80 123 chr1 36364358 36364479 -245829185 + MIR SINE MIR 148 262 0 200 333 25 25 chr1 36365191 36365272 -245828392 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36365664 36365739 -245827925 + (TG)n Simple_repeat Simple_repeat 1 75 0 186 311 0 49 chr1 36365884 36365945 -245827719 + MIR SINE MIR 40 97 -165 1701 151 12 72 chr1 36365949 36366281 -245827383 - AluJo SINE Alu 0 312 1 372 178 33 0 chr1 36366296 36366386 -245827278 - L1MB4 LINE L1 -2 6178 6086 1948 172 0 19 chr1 36366446 36366760 -245826904 - AluJb SINE Alu -4 308 1 392 215 51 0 chr1 36366768 36366847 -245826817 + MIR SINE MIR 110 192 -70 241 305 0 0 chr1 36367162 36367257 -245826407 - L1MC4 LINE L1 -1334 6708 6614 236 234 0 43 chr1 36367225 36367319 -245826345 - L1MC4 LINE L1 -1339 6703 6614 * 1965 106 31 38 chr1 36367324 36367616 -245826048 - AluSx SINE Alu -22 290 1 270 200 0 33 chr1 36367784 36367844 -245825820 + MIR3 SINE MIR 122 179 -29 546 286 71 34 chr1 36367862 36368100 -245825564 + MIR SINE MIR 1 247 -15 782 257 52 5 chr1 36368997 36369207 -245824457 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36369300 36369427 -245824237 + (CA)n Simple_repeat Simple_repeat 2 128 0 370 287 66 30 chr1 36369565 36369732 -245823932 - MIR SINE MIR -10 252 80 284 291 0 0 chr1 36369781 36369860 -245823804 - L2 LINE L2 -209 3063 2985 1017 185 25 30 chr1 36369866 36370066 -245823598 + MER20 DNA MER1_type 7 205 -14 520 302 167 0 chr1 36370082 36370297 -245823367 - MIR SINE MIR -4 258 8 220 248 137 46 chr1 36370352 36370505 -245823159 + MIR3 SINE MIR 35 201 -7 481 256 43 37 chr1 36371256 36371420 -245822244 + MIR3 SINE MIR 21 185 -23 399 260 40 0 chr1 36371707 36371807 -245821857 - L3 LINE CR1 -71 1506 1403 245 309 36 18 chr1 36371887 36371997 -245821667 - L2 LINE L2 -1 3271 3160 477 276 0 32 chr1 36372070 36372226 -245821438 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36372262 36372286 -245821378 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 220 267 67 0 chr1 36372292 36372367 -245821297 - L2 LINE L2 -214 3058 2979 283 206 22 98 chr1 36373091 36373275 -245820389 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36374877 36374908 -245818756 + (TG)n Simple_repeat Simple_repeat 2 32 0 225 313 0 23 chr1 36374974 36375105 -245818559 - L2 LINE L2 -290 2982 2855 378 288 38 44 chr1 36375680 36375840 -245817824 + MLT1L LTR MaLR 15 173 -442 334 230 14 0 chr1 36375833 36375907 -245817757 + MLT1L LTR MaLR 124 198 -417 * 226 237 197 26 chr1 36376024 36376100 -245817564 + MLT1K LTR MaLR 328 416 -172 255 260 60 30 chr1 36376136 36376236 -245817428 + MLT1L LTR MaLR 513 615 0 186 273 182 16 chr1 36376354 36376475 -245817189 - L2 LINE L2 -1 3312 3172 290 297 30 10 chr1 36376500 36376601 -245817063 - MIR SINE MIR -48 214 112 473 322 161 24 chr1 36376610 36377032 -245816632 + MLT1J2 LTR MaLR 1 495 -16 2244 126 0 0 chr1 36377054 36377356 -245816308 - AluSx SINE Alu -10 302 1 2335 108 0 0 chr1 36377500 36377797 -245815867 - AluSx SINE Alu -15 297 1 2771 199 12 34 chr1 36378294 36378800 -245814864 - MER82 DNA MER2_type -1 652 158 2058 117 7 3 chr1 36378800 36379102 -245814562 + AluSq SINE Alu 1 303 0 2771 199 12 34 chr1 36379102 36379181 -245814483 - MER82 DNA MER2_type -495 158 79 453 249 50 50 chr1 36379325 36379506 -245814158 - MIR SINE MIR -17 245 65 205 337 46 29 chr1 36379656 36379831 -245813833 + L2 LINE L2 1314 1491 -1823 186 354 88 19 chr1 36379973 36380188 -245813476 + L2 LINE L2 1569 1798 -1516 1180 240 103 51 chr1 36380816 36381283 -245812381 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36381380 36381438 -245812226 + GA-rich Low_complexity Low_complexity 3 61 0 873 325 45 37 chr1 36381540 36381887 -245811777 - ERVL LTR ERVL -711 5053 4698 2212 93 11 0 chr1 36381887 36382190 -245811474 + AluSg SINE Alu 1 306 0 873 325 45 37 chr1 36382190 36382333 -245811331 - ERVL LTR ERVL -1066 4698 4558 2223 323 42 16 chr1 36382479 36383440 -245810224 - ERVL LTR ERVL -1322 4332 3347 327 247 12 12 chr1 36383472 36383553 -245810111 + LTR50 LTR ERVL 3 83 -712 409 306 15 7 chr1 36383564 36383698 -245809966 - L1MC4 LINE L1 -1332 6990 1976 1133 352 13 4 chr1 36383716 36384460 -245809204 - ERVL LTR ERVL -3420 1576 1251 1134 227 176 5 chr1 36384594 36385192 -245808472 + LTR50 LTR ERVL 3 787 -8 567 318 35 83 chr1 36385214 36385415 -245808249 - ERVL LTR ERVL -3957 1039 869 2175 122 14 0 chr1 36385415 36385710 -245807954 - AluSx SINE Alu 0 312 14 567 318 35 83 chr1 36385710 36385939 -245807725 - ERVL LTR ERVL -4127 869 630 386 296 85 40 chr1 36386425 36386624 -245807040 - LTR16C LTR ERVL -96 395 188 260 256 146 0 chr1 36386749 36386831 -245806833 + L1MD2 LINE L1 6256 6349 -10 261 203 0 16 chr1 36386860 36386898 -245806766 + (TA)n Simple_repeat Simple_repeat 2 40 -24 252 0 0 0 chr1 36386898 36386926 -245806738 + (CA)n Simple_repeat Simple_repeat 1 28 0 261 203 0 16 chr1 36386926 36386951 -245806713 + (TA)n Simple_repeat Simple_repeat 40 64 0 361 363 74 28 chr1 36387226 36387441 -245806223 + L1MEd LINE L1 535 759 -5360 423 324 101 52 chr1 36387466 36387871 -245805793 - LTR16A LTR ERVL -8 442 18 361 239 121 38 chr1 36387911 36388150 -245805514 + L1MEd LINE L1 817 1075 -5044 401 231 92 136 chr1 36388150 36388170 -245805494 + MIR SINE MIR 5 24 -238 2005 139 17 7 chr1 36388170 36388471 -245805193 + AluJb SINE Alu 1 304 -8 401 231 92 136 chr1 36388471 36388703 -245804961 + MIR SINE MIR 24 246 -16 * 418 299 39 20 chr1 36388684 36388907 -245804757 + L1MEd LINE L1 1031 1257 -4862 216 257 135 47 chr1 36389339 36389487 -245804177 - L2 LINE L2 -214 3058 2898 239 0 0 31 chr1 36389754 36389786 -245803878 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2013 93 14 18 chr1 36389788 36390067 -245803597 - AluSx SINE Alu -32 280 3 521 240 33 13 chr1 36390691 36390841 -245802823 + MIR SINE MIR 41 193 -69 181 308 0 0 chr1 36391005 36391057 -245802607 + MIR SINE MIR 48 99 -163 386 287 125 54 chr1 36392297 36392612 -245801052 - L2 LINE L2 -1 3271 2927 876 205 102 19 chr1 36392612 36392817 -245800847 + MER58A DNA MER1_type 2 223 -1 386 287 125 54 chr1 36392817 36392853 -245800811 - L2 LINE L2 -345 2927 2895 285 194 0 69 chr1 36393262 36393334 -245800330 - MER33 DNA MER1_type 0 324 258 843 177 23 87 chr1 36393400 36393666 -245799998 - MER33 DNA MER1_type -75 249 1 304 250 181 43 chr1 36393721 36393837 -245799827 + L2 LINE L2 3138 3269 -3 1886 218 58 73 chr1 36394321 36394871 -245798793 - MLT1F1 LTR MaLR 0 567 1 2214 114 3 0 chr1 36394916 36395214 -245798450 + AluSq SINE Alu 1 299 -14 3081 150 24 19 chr1 36395314 36395886 -245797778 - LTR51 LTR ERV1 0 671 2 235 229 14 43 chr1 36396191 36396261 -245797403 + L2 LINE L2 2304 2371 -943 184 292 100 39 chr1 36396481 36396611 -245797053 + MIR3 SINE MIR 3 140 -68 653 221 66 74 chr1 36396615 36396683 -245796981 - MIR SINE MIR -3 259 192 1698 161 0 42 chr1 36396683 36396993 -245796671 - AluJb SINE Alu -15 297 1 653 221 66 74 chr1 36396993 36397168 -245796496 - MIR SINE MIR -70 192 18 1022 161 21 5 chr1 36398125 36398311 -245795353 + MER53 DNA DNA 1 189 0 231 326 82 10 chr1 36398566 36398664 -245795000 - L2 LINE L2 -5 3267 3163 602 225 163 52 chr1 36398848 36399060 -245794604 - L2 LINE L2 0 3313 3055 835 156 0 15 chr1 36399060 36399195 -245794469 - FLAM_C SINE Alu 0 133 1 602 225 163 52 chr1 36399195 36399289 -245794375 - L2 LINE L2 -258 3055 2973 252 0 0 0 chr1 36399313 36399341 -245794323 + (GGAAA)n Simple_repeat Simple_repeat 5 32 0 230 361 106 14 chr1 36399477 36399685 -245793979 - L2 LINE L2 -240 3073 2847 4089 70 0 2 chr1 36400028 36400553 -245793111 + L1PA5 LINE L1 5629 6152 -2 8789 152 53 28 chr1 36400643 36401375 -245792289 - L1 LINE L1 -1137 5009 4296 2146 129 7 0 chr1 36401375 36401685 -245791979 - AluSx SINE Alu 0 312 1 8789 152 53 28 chr1 36401685 36401699 -245791965 - L1 LINE L1 -1850 4296 4284 1961 143 11 0 chr1 36401699 36401979 -245791685 - AluSx SINE Alu -29 283 1 8789 152 53 28 chr1 36401979 36402957 -245790707 - L1 LINE L1 -1862 4284 3242 2016 131 64 22 chr1 36403240 36403600 -245790064 + THE1C LTR MaLR 1 375 0 1389 181 68 19 chr1 36403997 36404263 -245789401 + AluJb SINE Alu 1 279 -33 204 40 0 0 chr1 36404266 36404291 -245789373 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 2279 111 0 0 chr1 36404801 36405098 -245788566 + AluSx SINE Alu 1 297 -15 184 276 181 29 chr1 36405099 36405204 -245788460 - L2 LINE L2 -4 3268 3148 1696 263 73 28 chr1 36405227 36406309 -245787355 - L2 LINE L2 -4 3309 2181 2131 111 7 3 chr1 36406673 36406961 -245786703 + AluSg SINE Alu 1 289 -21 2429 99 3 0 chr1 36406974 36407286 -245786378 + AluSp SINE Alu 1 313 0 1518 123 14 9 chr1 36407291 36407511 -245786153 + AluSg/x SINE Alu 83 303 -7 485 238 19 81 chr1 36407881 36408041 -245785623 - MIR3 SINE MIR -52 156 7 1355 164 51 19 chr1 36408361 36408617 -245785047 + AluSq SINE Alu 1 264 -49 253 163 0 23 chr1 36458618 36458661 -245735003 - AluJ/FLAM SINE Alu -245 57 16 250 210 230 0 chr1 36458680 36458780 -245734884 + Charlie1 DNA MER1_type 2638 2760 -1 2360 93 0 7 chr1 36458806 36459108 -245734556 - AluSx SINE Alu -12 300 1 740 244 12 0 chr1 36459417 36459581 -245734083 + MIR3 SINE MIR 28 193 -15 186 133 0 0 chr1 36462120 36462150 -245731514 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1896 128 0 0 chr1 36462185 36462442 -245731222 - AluSx SINE Alu -55 257 1 1999 155 0 7 chr1 36462444 36462740 -245730924 - AluJo SINE Alu -18 294 1 2224 118 0 0 chr1 36462838 36463135 -245730529 + AluSx SINE Alu 1 297 -15 253 336 36 0 chr1 36463349 36463459 -245730205 - HERVL LTR ERVL -4756 898 785 321 290 70 30 chr1 36464056 36464256 -245729408 - LTR67 LTR ERVL 0 557 350 795 290 121 22 chr1 36464795 36465199 -245728465 + L2 LINE L2 2804 3247 -66 2491 57 0 3 chr1 36465291 36465587 -245728077 - AluY SINE Alu -16 295 1 193 188 208 40 chr1 36465829 36465930 -245727734 - MIR SINE MIR -75 187 70 2243 115 3 3 chr1 36466431 36466743 -245726921 + AluSx SINE Alu 1 312 0 654 231 0 64 chr1 36466748 36466904 -245726760 + FRAM SINE Alu 1 146 -30 338 261 42 34 chr1 36467257 36467376 -245726288 + L2 LINE L2 3194 3313 0 2569 55 0 0 chr1 36467502 36467810 -245725854 - AluY SINE Alu -3 308 1 1579 185 23 0 chr1 36467828 36468130 -245725534 - L1MB7 LINE L1 -148 6036 5728 1472 197 3 20 chr1 36468262 36468557 -245725107 - AluSq SINE Alu -9 304 15 288 301 247 33 chr1 36468968 36469015 -245724649 - L2 LINE L2 -608 2706 2670 2078 141 3 0 chr1 36469015 36469313 -245724351 + AluSx SINE Alu 1 299 -13 288 301 247 33 chr1 36469313 36470051 -245723613 - L2 LINE L2 -644 2670 1753 2553 73 39 25 chr1 36470064 36470085 -245723579 - MER4D LTR ERV1 0 872 853 2053 145 0 3 chr1 36470085 36470381 -245723283 + AluSx SINE Alu 1 295 -17 2553 73 39 25 chr1 36470381 36470716 -245722948 - MER4D LTR ERV1 -19 853 511 1815 72 9 0 chr1 36470716 36470939 -245722725 - AluSq SINE Alu -10 303 79 2498 56 0 26 chr1 36471871 36472176 -245721488 + AluY SINE Alu 1 297 -14 1172 188 4 4 chr1 36472505 36472734 -245720930 - AluJb SINE Alu 0 312 84 195 42 0 0 chr1 36472777 36472801 -245720863 + (TA)n Simple_repeat Simple_repeat 1 24 0 418 284 18 71 chr1 36472846 36473015 -245720649 - MIR3 SINE MIR -33 175 16 701 288 213 17 chr1 36473517 36473920 -245719744 - L1MC4a LINE L1 -1942 5866 5385 488 221 0 11 chr1 36474939 36475034 -245718630 - L1MC1 LINE L1 -60 6273 6180 331 231 214 12 chr1 36475039 36475212 -245718452 + MIR SINE MIR 28 235 -27 287 278 49 0 chr1 36475327 36475439 -245718225 + MIR SINE MIR 56 171 -63 2196 118 10 0 chr1 36475439 36475735 -245717929 - AluSx SINE Alu -13 299 1 216 0 0 0 chr1 36475738 36475762 -245717902 + (T)n Simple_repeat Simple_repeat 1 24 0 314 275 133 13 chr1 36476141 36476287 -245717377 + MIR SINE MIR 33 189 -62 22 80 0 13 chr1 36476613 36476675 -245716989 + AT_rich Low_complexity Low_complexity 1 63 -11 1517 194 20 3 chr1 36476675 36476968 -245716696 + AluJo SINE Alu 1 298 -14 22 80 0 13 chr1 36476968 36476980 -245716684 + AT_rich Low_complexity Low_complexity 63 74 0 265 262 60 12 chr1 36477199 36477283 -245716381 + L2 LINE L2 1875 1962 -1352 291 64 0 0 chr1 36477447 36477494 -245716170 + AluSp/q SINE Alu 257 303 0 2155 199 42 58 chr1 36477510 36477968 -245715696 - L1ME1 LINE L1 -132 6034 5585 2491 59 23 0 chr1 36477968 36478272 -245715392 + AluY SINE Alu 1 311 0 2155 199 42 58 chr1 36478272 36478386 -245715278 - L1ME1 LINE L1 -581 5585 5471 2826 139 26 83 chr1 36478400 36478469 -245715195 - L1MB3 LINE L1 -2 6181 6110 2450 87 0 0 chr1 36478469 36478767 -245714897 + AluSq SINE Alu 1 298 -15 2826 139 26 83 chr1 36478767 36478868 -245714796 - L1MB3 LINE L1 -73 6110 6005 633 231 8 8 chr1 36478868 36478998 -245714666 - FLAM_A SINE Alu 0 133 4 2826 139 26 83 chr1 36478998 36479437 -245714227 - L1MB3 LINE L1 -178 6005 5606 1360 201 75 11 chr1 36479437 36479716 -245713948 - AluJo SINE Alu -13 299 3 1122 164 29 24 chr1 36479720 36479887 -245713777 - AluJb SINE Alu -6 306 136 2283 117 0 3 chr1 36479887 36480194 -245713470 - AluSx SINE Alu -6 306 1 1122 164 29 24 chr1 36480194 36480234 -245713430 - AluJb SINE Alu -176 136 98 2358 106 0 3 chr1 36480254 36480565 -245713099 - AluSx SINE Alu -2 310 1 264 149 21 0 chr1 36480565 36480612 -245713052 - L1MB3 LINE L1 -683 5491 5444 * 2667 185 113 101 chr1 36480607 36480787 -245712877 - L1ME1 LINE L1 -743 5403 5227 2552 66 0 3 chr1 36480787 36481092 -245712572 + AluY SINE Alu 1 304 -7 2667 185 113 101 chr1 36481092 36481364 -245712300 - L1ME1 LINE L1 -919 5227 4960 2380 91 3 0 chr1 36481364 36481662 -245712002 + AluSp SINE Alu 9 307 -6 2667 185 113 101 chr1 36481662 36481831 -245711833 - L1ME1 LINE L1 -1186 4960 4795 1685 148 36 22 chr1 36481831 36482109 -245711555 + AluJb SINE Alu 21 302 -10 258 32 0 0 chr1 36482110 36482141 -245711523 + (TA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr1 36482140 36482164 -245711500 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 2667 185 113 101 chr1 36482141 36482489 -245711175 - L1ME1 LINE L1 -1351 4795 4509 1973 153 0 3 chr1 36482489 36482789 -245710875 - AluSx SINE Alu -13 299 1 2667 185 113 101 chr1 36482789 36483182 -245710482 - L1ME1 LINE L1 -1637 4509 4122 1831 83 120 26 chr1 36483199 36483358 -245710306 - AluY SINE Alu 0 311 168 2085 124 17 0 chr1 36483358 36483649 -245710015 - AluSp SINE Alu -17 296 1 1831 83 120 26 chr1 36483649 36483784 -245709880 - AluY SINE Alu -143 168 1 2298 100 0 7 chr1 36483811 36484112 -245709552 - AluSx SINE Alu -13 299 1 840 155 8 0 chr1 36484115 36484244 -245709420 - AluSq/x SINE Alu -179 133 4 484 139 0 0 chr1 36484277 36484349 -245709315 + AluJ/FLAM SINE Alu 3 74 -238 990 183 26 7 chr1 36484384 36484614 -245709050 - AluJb SINE Alu -23 289 5 276 182 0 0 chr1 36484647 36484735 -245708929 + (TA)n Simple_repeat Simple_repeat 2 89 0 1338 72 22 22 chr1 36484736 36484892 -245708772 - AluY SINE Alu -23 288 130 1725 67 8 38 chr1 36484892 36485164 -245708500 - AluY SINE Alu 0 311 66 1338 72 22 22 chr1 36485164 36485188 -245708476 - AluY SINE Alu -180 131 108 838 168 49 0 chr1 36485200 36485343 -245708321 + FRAM SINE Alu 8 157 -19 428 174 283 0 chr1 36485349 36485441 -245708223 - FLAM_C SINE Alu -15 118 1 551 192 48 8 chr1 36485444 36485569 -245708095 - L1MEc LINE L1 -3060 3155 3026 2012 147 10 3 chr1 36485569 36485875 -245707789 - AluJb SINE Alu -4 308 1 2200 119 3 7 chr1 36485883 36486185 -245707479 - AluSg SINE Alu -9 301 1 744 167 70 87 chr1 36486198 36486497 -245707167 - L1MEc LINE L1 -4031 2365 2072 756 215 7 0 chr1 36486502 36486646 -245707018 - FRAM SINE Alu -12 164 20 2454 74 7 0 chr1 36486677 36486976 -245706688 - AluSp SINE Alu -12 301 1 720 228 70 21 chr1 36486978 36487219 -245706445 - L1MEc LINE L1 -4529 1867 1615 330 264 174 7 chr1 36487251 36487395 -245706269 - L1MEc LINE L1 -6192 204 37 23 68 0 0 chr1 36487647 36487691 -245705973 + AT_rich Low_complexity Low_complexity 1 44 0 2277 94 10 0 chr1 36487928 36488227 -245705437 + AluSq SINE Alu 6 307 -6 515 272 66 42 chr1 36488975 36489029 -245704635 + MIR SINE MIR 44 95 -167 1830 130 33 4 chr1 36489029 36489305 -245704359 - AluJb SINE Alu 0 312 29 515 272 66 42 chr1 36489305 36489463 -245704201 + MIR SINE MIR 95 261 -1 673 156 78 117 chr1 36489695 36489875 -245703789 + MIR SINE MIR 52 224 -38 244 220 66 33 chr1 36490458 36490549 -245703115 - L1P LINE L1 -743 5408 5315 472 289 75 43 chr1 36490841 36491076 -245702588 - MIR SINE MIR -1 261 17 801 159 19 125 chr1 36491258 36491280 -245702384 + MER5A DNA MER1_type 4 27 -162 2109 101 0 44 chr1 36491280 36491596 -245702068 + AluSx SINE Alu 1 302 -10 801 159 19 125 chr1 36491596 36491781 -245701883 + MER5A DNA MER1_type 27 189 0 374 276 154 32 chr1 36491868 36491940 -245701724 + MIR SINE MIR 2 64 -198 1874 131 46 0 chr1 36491940 36492222 -245701442 + AluSx SINE Alu 1 295 -17 374 276 154 32 chr1 36492222 36492370 -245701294 + MIR SINE MIR 64 249 -13 367 346 154 31 chr1 36492409 36492767 -245700897 + L2 LINE L2 2871 3272 0 1898 132 14 0 chr1 36493102 36493397 -245700267 + AluSx SINE Alu 1 299 -13 1745 149 27 7 chr1 36493524 36493825 -245699839 + AluJo SINE Alu 1 307 -5 268 217 0 0 chr1 36493827 36493873 -245699791 + MIR SINE MIR 30 75 -133 1017 217 229 23 chr1 36494011 36494094 -245699570 + L2 LINE L2 2444 2509 -805 2255 140 9 6 chr1 36494094 36494437 -245699227 + MER2 DNA MER2_type 1 344 0 1017 217 229 23 chr1 36494437 36494703 -245698961 + L2 LINE L2 2509 2865 -449 373 258 117 29 chr1 36494769 36495009 -245698655 + MIR SINE MIR 2 262 0 327 295 25 40 chr1 36495010 36495146 -245698518 - MER5B DNA MER1_type 0 178 60 2110 104 7 3 chr1 36497219 36497518 -245696146 - AluSp SINE Alu -13 300 1 2017 125 0 3 chr1 36500186 36500475 -245693189 - AluSx SINE Alu -22 290 3 188 231 231 58 chr1 36500953 36501057 -245692607 - MIR SINE MIR -67 141 20 218 218 18 36 chr1 36502516 36502571 -245691093 - L2 LINE L2 -2 3270 3217 263 263 45 11 chr1 36504199 36504299 -245689365 - MIR SINE MIR -67 141 51 2014 92 6 57 chr1 36504962 36505005 -245688659 + AluSg SINE Alu 1 45 -265 2394 66 3 0 chr1 36505005 36505306 -245688358 - AluSp SINE Alu -10 303 2 2014 92 6 57 chr1 36505306 36505579 -245688085 + AluSg SINE Alu 45 301 -9 738 209 95 38 chr1 36505617 36505828 -245687836 - MIR SINE MIR 0 262 40 522 243 246 22 chr1 36505896 36506213 -245687451 - HAL1 LINE L1 -117 2390 2003 297 313 28 68 chr1 36506419 36506595 -245687069 + L2 LINE L2 2955 3123 -149 222 245 0 0 chr1 36506601 36506650 -245687014 + A-rich Low_complexity Low_complexity 1 49 0 1349 128 9 18 chr1 36506794 36507020 -245686644 + AluJo SINE Alu 84 307 -5 481 310 55 0 chr1 36508407 36508552 -245685112 - MIR SINE MIR -107 155 3 208 219 37 37 chr1 36509825 36509907 -245683757 + (CAGAGA)n Simple_repeat Simple_repeat 3 84 0 32 0 0 0 chr1 36510519 36510551 -245683113 + GC_rich Low_complexity Low_complexity 1 32 0 22 42 0 0 chr1 36510600 36510624 -245683040 + GC_rich Low_complexity Low_complexity 1 24 0 1895 141 13 0 chr1 36511348 36511654 -245682010 - AluSx SINE Alu -2 310 1 246 289 0 0 chr1 36514174 36514226 -245679438 - L2 LINE L2 -261 3052 3001 311 303 96 32 chr1 36514395 36514583 -245679081 + L2 LINE L2 2974 3173 -140 707 97 10 0 chr1 36514707 36514810 -245678854 - L1MB7 LINE L1 -15 6169 6066 2054 122 0 3 chr1 36514810 36515114 -245678550 - AluSx SINE Alu -9 303 1 3256 86 10 57 chr1 36515546 36515893 -245677771 - MER4D LTR ERV1 -384 488 171 1405 178 36 4 chr1 36515893 36516174 -245677490 + AluJb SINE Alu 3 292 -20 3256 86 10 57 chr1 36516174 36516337 -245677327 - MER4D LTR ERV1 -701 171 2 4098 105 4 4 chr1 36516438 36517001 -245676663 - LTR6A LTR ERV1 -1 563 1 328 311 76 8 chr1 36517774 36517893 -245675771 - L2 LINE L2 -4 3268 3142 2131 111 0 0 chr1 36518082 36518380 -245675284 - AluSq SINE Alu -15 298 1 332 268 173 30 chr1 36518424 36518600 -245675064 - MIR SINE MIR -51 211 16 777 196 0 0 chr1 36518668 36518801 -245674863 + FLAM_C SINE Alu 1 133 0 2007 147 0 3 chr1 36518816 36519128 -245674536 + AluSx SINE Alu 1 311 -1 910 274 63 19 chr1 36519201 36519519 -245674145 - L2 LINE L2 -3 3310 2979 397 317 0 0 chr1 36519512 36519613 -245674051 - L2 LINE L2 -14 3299 3199 * 2067 79 68 0 chr1 36519703 36519982 -245673682 + AluSx SINE Alu 1 298 -14 1651 167 24 3 chr1 36520001 36520289 -245673375 + AluJo SINE Alu 2 295 -17 264 289 8 47 chr1 36520289 36520417 -245673247 + L1MEd LINE L1 1089 1211 -4908 1531 184 4 4 chr1 36520466 36520744 -245672920 + AluJb SINE Alu 21 298 -14 388 294 63 60 chr1 36520838 36521107 -245672557 - LTR38 LTR ERV1 0 556 287 9435 52 7 106 chr1 36521219 36522735 -245670929 + SVA Other Other 18 1382 -4 10441 103 18 31 chr1 36522735 36523042 -245670622 + Tigger1 DNA MER2_type 872 1182 -1236 1908 109 0 67 chr1 36523042 36523196 -245670468 + AluSx SINE Alu 1 125 -187 2054 104 13 3 chr1 36523196 36523495 -245670169 + AluSg SINE Alu 1 302 -8 1908 109 0 67 chr1 36523495 36523652 -245670012 + AluSx SINE Alu 125 291 -21 10441 103 18 31 chr1 36523652 36524227 -245669437 + Tigger1 DNA MER2_type 1182 1763 -655 2714 13 0 0 chr1 36524227 36524535 -245669129 + AluYa5 SINE Alu 1 308 -3 10441 103 18 31 chr1 36524535 36525219 -245668445 + Tigger1 DNA MER2_type 1763 2418 0 1918 152 0 0 chr1 36525604 36525901 -245667763 + AluY SINE Alu 4 300 -11 2076 116 0 0 chr1 36525921 36526222 -245667442 - AluSx SINE Alu -11 301 1 1170 259 141 43 chr1 36526244 36526631 -245667033 - L1M4c LINE L1 -4568 1816 1468 1554 178 24 10 chr1 36526631 36526929 -245666735 - AluJb SINE Alu -10 302 1 1170 259 141 43 chr1 36526929 36527363 -245666301 - L1M4c LINE L1 -4916 1468 944 2162 71 36 0 chr1 36527363 36527681 -245665983 - AluY SINE Alu 0 311 1 1170 259 141 43 chr1 36527681 36527778 -245665886 - L1M4c LINE L1 -5440 944 858 2225 95 0 0 chr1 36528464 36528760 -245664904 - AluSq SINE Alu -7 306 11 312 300 15 62 chr1 36529595 36529725 -245663939 - MER5A DNA MER1_type -4 185 62 1193 112 0 43 chr1 36529856 36529875 -245663789 + AluSg/x SINE Alu 118 136 -176 2238 77 17 0 chr1 36529875 36530173 -245663491 + AluSp SINE Alu 1 303 -10 1193 112 0 43 chr1 36530173 36530341 -245663323 + AluSg/x SINE Alu 136 297 -15 2023 101 7 17 chr1 36530345 36530641 -245663023 + AluSq SINE Alu 1 293 -20 2221 100 0 3 chr1 36530642 36530943 -245662721 + AluSx SINE Alu 1 300 -12 246 216 20 0 chr1 36530943 36530994 -245662670 - MER5A DNA MER1_type -61 128 77 376 237 181 47 chr1 36531186 36531401 -245662263 + L1ME LINE L1 5580 5823 -298 1463 195 0 4 chr1 36531417 36531679 -245661985 + AluJb SINE Alu 12 272 -40 1249 204 7 29 chr1 36531691 36531802 -245661862 + AluJo SINE Alu 27 139 -173 2136 78 11 3 chr1 36531802 36532112 -245661552 + AluSp SINE Alu 2 313 0 1249 204 7 29 chr1 36532112 36532274 -245661390 + AluJo SINE Alu 139 295 -17 1531 156 35 0 chr1 36532440 36532697 -245660967 - AluJb SINE Alu -46 266 1 2232 74 0 17 chr1 36532720 36533019 -245660645 + AluY SINE Alu 3 296 -15 1623 153 11 8 chr1 36533108 36533370 -245660294 + AluJb SINE Alu 6 268 -44 664 88 53 26 chr1 36534512 36534626 -245659038 + MER47A DNA MER2_type 45 161 -205 2242 95 3 0 chr1 36534648 36534954 -245658710 + AluSq SINE Alu 1 307 -6 515 272 66 42 chr1 36535702 36535756 -245657908 + MIR SINE MIR 44 95 -167 1620 174 33 4 chr1 36535756 36536032 -245657632 - AluJb SINE Alu 0 312 29 515 272 66 42 chr1 36536032 36536190 -245657474 + MIR SINE MIR 95 261 -1 669 172 78 117 chr1 36536422 36536602 -245657062 + MIR SINE MIR 52 224 -38 244 220 66 33 chr1 36537185 36537276 -245656388 - L1P LINE L1 -743 5408 5315 472 289 75 43 chr1 36537568 36537803 -245655861 - MIR SINE MIR -1 261 17 801 159 19 125 chr1 36537985 36538007 -245655657 + MER5A DNA MER1_type 4 27 -162 2109 101 0 44 chr1 36538007 36538323 -245655341 + AluSx SINE Alu 1 302 -10 801 159 19 125 chr1 36538323 36538508 -245655156 + MER5A DNA MER1_type 27 189 0 372 285 140 18 chr1 36538596 36538668 -245654996 + MIR SINE MIR 2 64 -198 1880 135 46 0 chr1 36538668 36538950 -245654714 + AluSx SINE Alu 1 295 -17 372 285 140 18 chr1 36538950 36539098 -245654566 + MIR SINE MIR 64 249 -13 367 346 154 31 chr1 36539137 36539495 -245654169 + L2 LINE L2 2871 3272 0 1778 131 53 0 chr1 36539830 36540112 -245653552 + AluSg SINE Alu 1 297 -13 1783 149 27 7 chr1 36540241 36540542 -245653122 + AluJo SINE Alu 1 307 -5 245 217 0 0 chr1 36540544 36540590 -245653074 + MIR SINE MIR 30 75 -133 946 214 229 23 chr1 36540728 36540811 -245652853 + L2 LINE L2 2444 2509 -805 2294 140 9 6 chr1 36540811 36541154 -245652510 + MER2 DNA MER2_type 1 344 0 946 214 229 23 chr1 36541154 36541420 -245652244 + L2 LINE L2 2509 2865 -449 442 275 108 21 chr1 36541486 36541726 -245651938 + MIR SINE MIR 2 262 0 302 297 23 39 chr1 36541727 36541863 -245651801 - MER5B DNA MER1_type 0 178 60 235 175 0 0 chr1 36542558 36542598 -245651066 + A-rich Low_complexity Low_complexity 3 42 0 416 301 65 80 chr1 36542642 36542685 -245650979 + L3 LINE CR1 592 634 -943 2360 64 0 3 chr1 36542685 36542980 -245650684 - AluSx SINE Alu -18 294 1 416 301 65 80 chr1 36542980 36543261 -245650403 + L3 LINE CR1 634 911 -666 302 282 179 8 chr1 36543245 36543362 -245650302 - L2 LINE L2 -9 3263 3127 * 331 222 60 43 chr1 36543402 36543519 -245650145 + L1MCa LINE L1 2000 2118 -4308 1886 131 3 33 chr1 36543844 36544149 -245649515 + AluJo SINE Alu 2 297 -15 836 188 171 6 chr1 36544206 36544382 -245649282 + MER3 DNA MER1_type 5 209 0 2119 97 3 3 chr1 36544549 36544837 -245648827 + AluSg SINE Alu 1 288 -22 342 286 64 108 chr1 36544869 36545002 -245648662 - MIR SINE MIR -15 247 132 868 165 0 0 chr1 36545002 36545135 -245648529 + FLAM_C SINE Alu 1 133 0 342 286 64 108 chr1 36545135 36545253 -245648411 - MIR SINE MIR -130 132 10 1577 145 59 38 chr1 36546053 36546342 -245647322 + AluJb SINE Alu 1 295 -17 897 130 0 36 chr1 36546583 36546721 -245646943 - FLAM_C SINE Alu 0 133 1 186 287 81 0 chr1 36547173 36547260 -245646404 - MIR SINE MIR -132 130 37 211 269 97 43 chr1 36548302 36548395 -245645269 - MIR SINE MIR -162 100 3 2513 70 0 0 chr1 36549118 36549431 -245644233 + AluSq SINE Alu 1 313 0 456 104 26 0 chr1 36549431 36549508 -245644156 + Tigger1 DNA MER2_type 1613 1691 -727 2157 109 3 0 chr1 36549510 36549804 -245643860 + AluSg SINE Alu 1 295 -15 656 133 10 0 chr1 36549804 36549902 -245643762 + AluSg/x SINE Alu 194 292 -18 2422 59 0 3 chr1 36549902 36550209 -245643455 + AluY SINE Alu 1 306 -5 414 245 53 0 chr1 36550210 36550304 -245643360 - Charlie1 DNA MER1_type -2662 99 1 436 322 28 38 chr1 36550357 36550568 -245643096 - L2 LINE L2 -1 3312 3104 1022 144 80 0 chr1 36550607 36550794 -245642870 - MER3 DNA MER1_type -7 202 1 1497 291 265 22 chr1 36550805 36551535 -245642129 - L2 LINE L2 -310 3003 2452 378 0 0 0 chr1 36551535 36551577 -245642087 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 1497 291 265 22 chr1 36551577 36551604 -245642060 - L2 LINE L2 -861 2452 2433 2229 91 0 0 chr1 36551604 36551902 -245641762 + AluY SINE Alu 1 298 -13 1497 291 265 22 chr1 36551902 36552370 -245641294 - L2 LINE L2 -880 2433 1479 706 144 17 0 chr1 36552394 36552512 -245641152 - L1M4 LINE L1 -454 5720 5601 1113 192 9 9 chr1 36552520 36552744 -245640920 - AluJb SINE Alu -2 310 87 1714 198 15 1 chr1 36552744 36553312 -245640352 - L1M4 LINE L1 -577 5607 5028 510 248 82 114 chr1 36553495 36554072 -245639592 + L1MC4 LINE L1 7193 7750 -292 24 32 0 0 chr1 36554072 36554103 -245639561 + AT_rich Low_complexity Low_complexity 1 31 0 627 258 148 13 chr1 36554171 36554489 -245639175 + L1ME4a LINE L1 5536 5896 -225 313 229 12 60 chr1 36554526 36554609 -245639055 + L1ME4a LINE L1 5973 6051 -70 719 370 26 9 chr1 36554609 36554658 -245639006 + L3 LINE CR1 1228 1275 -302 2091 105 26 0 chr1 36554658 36554962 -245638702 + AluSx SINE Alu 1 312 0 719 370 26 9 chr1 36554962 36555255 -245638409 + L3 LINE CR1 1275 1576 -1 290 309 226 32 chr1 36556070 36556287 -245637377 - MIR SINE MIR -2 260 2 1227 189 21 105 chr1 36557221 36557554 -245636110 - AluYb8 SINE Alu -13 305 1 1720 127 0 4 chr1 36558457 36558709 -245634955 - AluY SINE Alu -59 252 2 357 275 124 43 chr1 36558710 36558943 -245634721 - L1ME LINE L1 -349 5772 5521 2179 82 3 17 chr1 36558948 36559242 -245634422 + AluSp SINE Alu 1 290 -23 21 57 0 0 chr1 36560533 36560568 -245633096 + AT_rich Low_complexity Low_complexity 1 35 0 316 249 42 106 chr1 36565100 36565289 -245628375 - MIR3 SINE MIR -8 200 24 553 306 105 5 chr1 36567297 36567506 -245626158 - MIR SINE MIR -16 246 17 253 379 41 0 chr1 36567874 36568019 -245625645 - MIR3 SINE MIR -38 170 20 203 149 30 30 chr1 36568254 36568321 -245625343 + CT-rich Low_complexity Low_complexity 1 67 0 2070 91 14 0 chr1 36568901 36569186 -245624478 + AluSx SINE Alu 1 289 -23 233 282 0 39 chr1 36569191 36569269 -245624395 + L2 LINE L2 3197 3271 -1 353 268 0 0 chr1 36569276 36569358 -245624306 - L2 LINE L2 -2 3311 3230 2212 100 3 0 chr1 36569745 36570045 -245623619 - AluSq SINE Alu -10 303 3 327 308 37 0 chr1 36570076 36570183 -245623481 - MIR SINE MIR -99 163 53 362 216 0 0 chr1 36570461 36570535 -245623129 - MIR SINE MIR -112 150 77 263 296 96 96 chr1 36570615 36570959 -245622705 - L2 LINE L2 -51 3221 2878 879 279 120 36 chr1 36571072 36571790 -245621874 - L2 LINE L2 -1 3312 2530 199 267 0 19 chr1 36571977 36572082 -245621582 + G-rich Low_complexity Low_complexity 3 105 0 274 269 13 0 chr1 36572180 36572258 -245621406 - MIR SINE MIR -147 115 37 484 207 41 8 chr1 36572776 36572897 -245620767 + MIR SINE MIR 67 191 -71 286 304 234 25 chr1 36573663 36573864 -245619800 + MIR SINE MIR 20 262 0 805 126 160 46 chr1 36574932 36575107 -245618557 - AluJb SINE Alu -82 230 36 2249 71 17 0 chr1 36575154 36575448 -245618216 - AluY SINE Alu -12 299 1 1972 118 0 30 chr1 36575479 36575614 -245618050 + AluSg SINE Alu 1 138 -172 2259 77 17 0 chr1 36575614 36575912 -245617752 + AluSp SINE Alu 1 303 -10 1972 118 0 30 chr1 36575912 36576080 -245617584 + AluSg SINE Alu 138 295 -15 2230 73 0 27 chr1 36576084 36576385 -245617279 + AluY SINE Alu 1 293 -18 202 200 0 0 chr1 36576690 36576730 -245616934 + MIR SINE MIR 78 117 -91 410 311 30 24 chr1 36577828 36577995 -245615669 - MIR SINE MIR -2 260 93 518 298 15 0 chr1 36578651 36578664 -245615000 + MIR SINE MIR 30 41 -221 1689 153 13 23 chr1 36578664 36578827 -245614837 - AluJo SINE Alu -15 297 137 2306 77 0 3 chr1 36578827 36579125 -245614539 - AluY SINE Alu -14 297 1 1689 153 13 23 chr1 36579125 36579261 -245614403 - AluJo SINE Alu -175 137 1 518 298 15 0 chr1 36579261 36579425 -245614239 + MIR SINE MIR 41 211 -51 437 291 209 14 chr1 36580884 36581162 -245612502 + L2 LINE L2 2506 2837 -477 210 330 21 43 chr1 36581225 36581319 -245612345 + L2 LINE L2 3222 3313 0 1046 193 60 5 chr1 36583853 36584071 -245609593 - MIR SINE MIR -5 257 28 381 273 136 7 chr1 36584269 36584423 -245609241 + MIR SINE MIR 78 251 -11 1765 208 69 19 chr1 36585196 36585672 -245607992 - L1MC4 LINE L1 -3 8039 7540 316 257 40 20 chr1 36585673 36585774 -245607890 - MIR3 SINE MIR -49 159 57 290 244 67 3 chr1 36585809 36585944 -245607720 - MIR SINE MIR -5 257 71 312 333 29 22 chr1 36586243 36586381 -245607283 + MIR SINE MIR 124 262 0 228 308 120 8 chr1 36587159 36587276 -245606388 - L2 LINE L2 -42 3230 3101 307 304 54 9 chr1 36587413 36587525 -245606139 - MIR SINE MIR -114 148 32 385 269 135 14 chr1 36587726 36587867 -245605797 + MIR SINE MIR 104 261 -1 182 365 54 0 chr1 36588214 36588288 -245605376 - L2 LINE L2 -200 3072 2995 192 40 0 0 chr1 36589458 36589483 -245604181 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 258 333 99 25 chr1 36592659 36592821 -245600843 + MIR SINE MIR 20 193 -69 427 245 170 31 chr1 36593631 36593790 -245599874 - MIR SINE MIR -16 246 66 265 281 0 0 chr1 36594213 36594277 -245599387 + MIR SINE MIR 81 144 -118 225 281 132 18 chr1 36594442 36594556 -245599108 - L2 LINE L2 0 3272 3146 250 293 61 0 chr1 36594646 36594745 -245598919 + MIR SINE MIR 79 183 -79 204 40 0 0 chr1 36595177 36595202 -245598462 + (A)n Simple_repeat Simple_repeat 1 25 0 1758 166 3 30 chr1 36595204 36595506 -245598158 + AluJo SINE Alu 1 294 -18 358 266 28 18 chr1 36595588 36595697 -245597967 + MIR3 SINE MIR 67 176 -32 1140 128 137 53 chr1 36596041 36596267 -245597397 - AluJb SINE Alu -28 284 40 384 274 35 0 chr1 36596326 36596439 -245597225 - MIR SINE MIR -39 223 107 359 248 10 8 chr1 36596806 36596935 -245596729 - MIR SINE MIR -59 149 22 201 273 25 25 chr1 36597176 36597337 -245596327 + (CCCCG)n Simple_repeat Simple_repeat 2 162 0 23 0 0 0 chr1 36597383 36597406 -245596258 + GC_rich Low_complexity Low_complexity 1 23 0 205 204 19 0 chr1 36597536 36597590 -245596074 + MIR SINE MIR 67 121 -87 1848 78 0 82 chr1 36597760 36598030 -245595634 + AluSx SINE Alu 1 248 -64 2487 52 3 39 chr1 36598904 36599211 -245594453 + AluY SINE Alu 1 296 -15 2407 105 0 3 chr1 36599478 36599791 -245593873 + AluSx SINE Alu 1 312 0 479 258 24 23 chr1 36600078 36600247 -245593417 - MIR SINE MIR -57 151 13 351 297 10 0 chr1 36600512 36600613 -245593051 + MIR SINE MIR 45 146 -62 2097 113 4 0 chr1 36601208 36601482 -245592182 + AluSx SINE Alu 1 275 -37 282 194 0 0 chr1 36601520 36601582 -245592082 + CT-rich Low_complexity Low_complexity 3 64 0 2093 130 7 3 chr1 36601584 36601883 -245591781 - AluSx SINE Alu -1 311 12 1887 145 0 14 chr1 36601906 36602188 -245591476 - AluJb SINE Alu -21 291 14 189 0 0 0 chr1 36602196 36602217 -245591447 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2384 98 0 3 chr1 36602783 36603089 -245590575 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 36603090 36603111 -245590553 + AT_rich Low_complexity Low_complexity 1 21 0 867 320 176 9 chr1 36603192 36603967 -245589697 + L2 LINE L2 1613 2516 -798 2275 87 0 52 chr1 36604072 36604382 -245589282 - AluSg SINE Alu -16 294 1 234 231 19 0 chr1 36604388 36604440 -245589224 + L2 LINE L2 2689 2741 -573 1179 176 59 14 chr1 36604461 36604683 -245588981 + AluJo SINE Alu 1 232 -80 737 139 8 0 chr1 36604716 36604845 -245588819 + L1M4 LINE L1 4477 4606 -1540 675 222 30 7 chr1 36604855 36605028 -245588636 + L1PB4 LINE L1 5994 6165 -1 3377 181 15 39 chr1 36605033 36605298 -245588366 + L1M4 LINE L1 4614 4884 -1300 1570 189 10 45 chr1 36605298 36605611 -245588053 - AluJo SINE Alu -10 302 1 3377 181 15 39 chr1 36605611 36606364 -245587300 + L1M4 LINE L1 4884 5607 -577 1382 159 9 9 chr1 36606364 36606590 -245587074 + AluJb SINE Alu 87 312 0 714 144 17 0 chr1 36606596 36606714 -245586950 + L1M4 LINE L1 5601 5720 -454 1502 293 268 19 chr1 36606738 36607206 -245586458 + L2 LINE L2 1479 1829 -1484 2364 91 0 0 chr1 36607206 36607504 -245586160 - AluY SINE Alu -13 298 1 1502 293 268 19 chr1 36607504 36607531 -245586133 + L2 LINE L2 1829 1848 -1465 414 0 0 0 chr1 36607531 36607577 -245586087 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1502 293 268 19 chr1 36607577 36608301 -245585363 + L2 LINE L2 1848 3003 -310 1030 144 80 0 chr1 36608312 36608499 -245585165 + MER3 DNA MER1_type 1 202 -7 436 318 28 38 chr1 36608538 36608749 -245584915 + L2 LINE L2 3104 3312 -1 415 245 53 0 chr1 36608802 36608896 -245584768 + Charlie1 DNA MER1_type 1 99 -2662 2576 58 0 3 chr1 36608897 36609205 -245584459 - AluY SINE Alu -4 307 1 613 133 10 0 chr1 36609205 36609303 -245584361 - AluSg/x SINE Alu -18 292 194 2310 105 3 0 chr1 36609303 36609597 -245584067 - AluSg SINE Alu -15 295 1 9437 104 12 29 chr1 36609599 36609677 -245583987 - Tigger1 DNA MER2_type -727 1691 1613 2587 74 3 0 chr1 36609677 36609989 -245583675 - AluSp SINE Alu 0 313 1 9437 104 12 29 chr1 36609989 36611129 -245582535 - Tigger1 DNA MER2_type -805 1613 499 2561 69 0 0 chr1 36611129 36611435 -245582229 - AluY SINE Alu -5 306 1 9437 104 12 29 chr1 36611435 36611686 -245581978 - Tigger1 DNA MER2_type -1919 499 245 1814 172 71 0 chr1 36611686 36612011 -245581653 + MER7A DNA MER2_type 1 346 0 1377 163 8 16 chr1 36612011 36612256 -245581408 - Tigger1 DNA MER2_type -2174 244 2 1554 167 42 58 chr1 36612256 36612552 -245581112 + Charlie1 DNA MER1_type 2339 2638 -123 2137 146 0 0 chr1 36612552 36612846 -245580818 - AluJb SINE Alu -18 294 1 1554 167 42 58 chr1 36612846 36612920 -245580744 + Charlie1 DNA MER1_type 2638 2704 -57 2315 96 0 3 chr1 36612920 36613213 -245580451 - AluSq SINE Alu -21 292 1 1554 167 42 58 chr1 36613213 36613271 -245580393 + Charlie1 DNA MER1_type 2704 2761 0 1832 156 19 29 chr1 36613649 36613964 -245579700 + AluJb SINE Alu 1 312 0 2410 104 0 0 chr1 36614351 36614658 -245579006 - AluSg SINE Alu -3 307 1 798 239 49 49 chr1 36614742 36614915 -245578749 + MIR SINE MIR 8 183 -79 880 92 0 63 chr1 36614915 36615057 -245578607 + FLAM_C SINE Alu 1 133 0 798 239 49 49 chr1 36615057 36615130 -245578534 + MIR SINE MIR 182 254 -8 2277 82 3 14 chr1 36615131 36615423 -245578241 - AluSc SINE Alu -20 289 1 754 207 110 90 chr1 36615713 36616003 -245577661 - MLT1K LTR MaLR 0 588 293 1981 115 45 10 chr1 36616223 36616511 -245577153 - AluSx SINE Alu -9 303 6 345 265 10 0 chr1 36617021 36617119 -245576545 + MIR3 SINE MIR 109 207 -1 248 186 86 29 chr1 36617202 36617272 -245576392 - LTR33A LTR ERVL -2 521 448 2376 98 3 3 chr1 36617292 36617598 -245576066 + AluSx SINE Alu 1 306 -6 2107 103 53 0 chr1 36617629 36617910 -245575754 + AluSq SINE Alu 1 296 -17 3325 143 53 114 chr1 36618076 36618209 -245575455 + L1MB7 LINE L1 5195 5334 -850 2513 90 0 0 chr1 36618209 36618520 -245575144 + AluY SINE Alu 1 311 0 3325 143 53 114 chr1 36618520 36618700 -245574964 + L1MB7 LINE L1 5334 5523 -661 269 143 0 0 chr1 36618700 36618742 -245574922 - MLT1K LTR MaLR -254 334 293 3325 143 53 114 chr1 36618742 36619054 -245574610 + L1MB7 LINE L1 5523 5798 -386 2197 130 0 0 chr1 36619054 36619362 -245574302 + AluSx SINE Alu 1 308 -4 3325 143 53 114 chr1 36619362 36619622 -245574042 + L1MB7 LINE L1 5798 6072 -112 9572 189 56 61 chr1 36619622 36622104 -245571560 - HERVS71 LTR ERV1 -6507 2471 4 4090 67 10 38 chr1 36622106 36622686 -245570978 - LTR6A LTR ERV1 0 564 1 1855 140 59 38 chr1 36622686 36622746 -245570918 - L1MA7 LINE L1 -143 6148 6091 2029 144 105 5 chr1 36622746 36623135 -245570529 - MSTA LTR MaLR 0 428 1 1855 140 59 38 chr1 36623135 36623177 -245570487 - L1MA7 LINE L1 -200 6091 6051 288 0 0 0 chr1 36623177 36623209 -245570455 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1855 140 59 38 chr1 36623209 36623497 -245570167 - L1MA7 LINE L1 -240 6051 5749 344 302 22 28 chr1 36623865 36624044 -245569620 - ERVL LTR ERVL -350 5414 5237 * 911 310 75 28 chr1 36624042 36624761 -245568903 - ERVL LTR ERVL -2866 2898 2018 2643 134 40 15 chr1 36624761 36625217 -245568447 - MLT1C LTR MaLR 0 467 1 911 310 75 28 chr1 36625217 36625596 -245568068 - ERVL LTR ERVL -3746 2018 1658 2181 124 0 10 chr1 36625882 36626181 -245567483 - AluSx SINE Alu -16 296 1 2047 152 0 7 chr1 36626183 36626479 -245567185 - AluJo SINE Alu -18 294 1 2251 118 0 0 chr1 36626577 36626873 -245566791 + AluSx SINE Alu 1 296 -16 292 338 56 24 chr1 36626957 36627170 -245566494 - ERVL LTR ERVL -4529 956 737 327 290 70 30 chr1 36627794 36627994 -245565670 - LTR67 LTR ERVL 0 557 350 846 290 121 22 chr1 36628533 36628937 -245564727 + L2 LINE L2 2804 3247 -66 2543 65 0 3 chr1 36629020 36629326 -245564338 - AluY SINE Alu -6 305 1 204 238 205 33 chr1 36629547 36629669 -245563995 - MIR SINE MIR -50 212 70 2098 112 3 3 chr1 36630170 36630456 -245563208 + AluSx SINE Alu 1 286 -26 2346 82 3 3 chr1 36630608 36630901 -245562763 - AluSc SINE Alu -16 293 1 2310 101 3 3 chr1 36630903 36631210 -245562454 - AluSx SINE Alu -5 307 1 1859 126 31 11 chr1 36631534 36631820 -245561844 - AluSx SINE Alu -20 292 1 2052 152 10 0 chr1 36633201 36633504 -245560160 + AluJo SINE Alu 1 306 -6 258 194 0 0 chr1 36633903 36633965 -245559699 + A-rich Low_complexity Low_complexity 1 62 0 1965 131 21 0 chr1 36634956 36635239 -245558425 - AluSx SINE Alu -9 303 15 222 231 77 0 chr1 36635902 36635967 -245557697 + MIR SINE MIR 39 108 -100 305 346 27 32 chr1 36635985 36636170 -245557494 + MER5A DNA MER1_type 3 186 -3 407 248 48 48 chr1 36636000 36636145 -245557519 - MER5B DNA MER1_type -3 175 31 642 311 87 31 chr1 36636165 36636454 -245557210 - L3 LINE CR1 -44 1533 1229 1680 176 38 3 chr1 36636713 36637002 -245556662 + AluJo SINE Alu 1 299 -13 2223 123 10 0 chr1 36637034 36637335 -245556329 + AluSg SINE Alu 1 304 -6 2275 109 0 0 chr1 36637587 36637881 -245555783 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 36637884 36637904 -245555760 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 281 299 150 17 chr1 36638328 36638529 -245555135 - MIR SINE MIR -13 249 16 2555 62 0 3 chr1 36638630 36638937 -245554727 + AluY SINE Alu 1 306 -5 187 309 36 18 chr1 36638996 36639051 -245554613 + MIR3 SINE MIR 15 70 -138 2054 107 17 27 chr1 36639101 36639400 -245554264 + AluSc SINE Alu 1 296 -13 198 306 37 74 chr1 36639400 36639508 -245554156 + MIR SINE MIR 126 229 -33 250 254 52 10 chr1 36640072 36640153 -245553511 + MIR SINE MIR 16 97 -111 545 269 183 18 chr1 36640371 36640462 -245553202 + MIR SINE MIR 3 78 -184 2582 61 0 0 chr1 36640462 36640759 -245552905 - AluY SINE Alu -14 297 1 545 269 183 18 chr1 36640759 36640886 -245552778 + MIR SINE MIR 78 257 -5 1660 165 42 32 chr1 36641634 36641943 -245551721 - AluJb SINE Alu 0 312 1 253 260 173 55 chr1 36642890 36643017 -245550647 + L2 LINE L2 3171 3312 -1 2325 100 3 0 chr1 36643149 36643450 -245550214 + AluSx SINE Alu 1 302 -10 200 182 0 0 chr1 36645669 36645702 -245547962 + (CA)n Simple_repeat Simple_repeat 2 34 0 2290 76 7 33 chr1 36645743 36646044 -245547620 - AluSx SINE Alu -19 293 1 1744 167 44 7 chr1 36646308 36646602 -245547062 - AluJb SINE Alu -1 311 7 2452 76 7 0 chr1 36646606 36646908 -245546756 - AluSc SINE Alu -5 304 1 2029 130 10 13 chr1 36647571 36647870 -245545794 - AluSx SINE Alu -14 298 1 1666 178 0 53 chr1 36648083 36648232 -245545432 + AluJo SINE Alu 1 125 -187 2261 82 0 26 chr1 36648232 36648535 -245545129 + AluSg SINE Alu 1 295 -15 1666 178 0 53 chr1 36648535 36648706 -245544958 + AluJo SINE Alu 125 304 -8 1484 161 51 71 chr1 36648734 36649045 -245544619 - AluJo SINE Alu -7 305 1 2506 73 0 10 chr1 36649670 36649983 -245543681 - AluSq SINE Alu -3 310 1 2332 97 3 0 chr1 36650228 36650528 -245543136 + AluSq SINE Alu 1 301 -12 296 355 47 55 chr1 36650648 36650904 -245542760 + L2 LINE L2 2903 3156 -116 2091 108 0 58 chr1 36651221 36651546 -245542118 + AluJb SINE Alu 3 308 -4 1730 148 0 93 chr1 36651719 36651855 -245541809 + AluJb SINE Alu 1 148 -164 2171 108 3 38 chr1 36651855 36652170 -245541494 + AluSx SINE Alu 1 304 -8 1730 148 0 93 chr1 36652170 36652377 -245541287 + AluJb SINE Alu 148 312 0 193 292 56 11 chr1 36652704 36652793 -245540871 + L2 LINE L2 2556 2648 -666 719 157 19 0 chr1 36652965 36653073 -245540591 - FLAM_A SINE Alu -30 112 3 2198 121 0 0 chr1 36653323 36653613 -245540051 + AluSx SINE Alu 1 290 -22 319 200 150 57 chr1 36653965 36654105 -245539559 - MER103 DNA DNA -1 165 13 2456 70 0 13 chr1 36654206 36654504 -245539160 + AluY SINE Alu 1 294 -17 2413 55 0 45 chr1 36655527 36655835 -245537829 + AluY SINE Alu 1 294 -17 963 199 6 6 chr1 36656243 36656424 -245537240 + AluJo SINE Alu 120 300 -12 1699 121 51 12 chr1 36656511 36656606 -245537058 + AluJo SINE Alu 26 116 -196 237 33 0 0 chr1 36656606 36656636 -245537028 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1699 121 51 12 chr1 36656636 36656796 -245536868 + AluJo SINE Alu 116 291 -21 469 280 52 28 chr1 36657138 36657321 -245536343 + MIR3 SINE MIR 8 189 -67 21 104 0 0 chr1 36657400 36657477 -245536187 + AT_rich Low_complexity Low_complexity 1 77 0 2102 134 13 0 chr1 36657742 36658040 -245535624 - AluSx SINE Alu -10 302 1 2653 45 0 7 chr1 36659205 36659515 -245534149 + AluSx SINE Alu 1 308 -4 204 229 12 24 chr1 36660124 36660207 -245533457 + (CCG)n Simple_repeat Simple_repeat 1 82 0 207 248 0 30 chr1 36660240 36660341 -245533323 + G-rich Low_complexity Low_complexity 4 101 0 21 0 0 0 chr1 36660360 36660381 -245533283 + GC_rich Low_complexity Low_complexity 1 21 0 248 228 13 13 chr1 36660491 36660570 -245533094 + (CCG)n Simple_repeat Simple_repeat 2 80 0 225 234 0 0 chr1 36660696 36660743 -245532921 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 578 243 93 55 chr1 36661384 36661443 -245532221 - MLT1J LTR MaLR 0 511 456 1813 171 13 7 chr1 36661443 36661742 -245531922 - AluJo SINE Alu -11 301 1 578 243 93 55 chr1 36661742 36661921 -245531743 - MLT1J LTR MaLR -55 456 285 2594 58 0 0 chr1 36661921 36662230 -245531434 + AluY SINE Alu 1 309 -2 578 243 93 55 chr1 36662230 36662393 -245531271 - MLT1J LTR MaLR -226 285 41 1871 171 0 0 chr1 36662400 36662686 -245530978 + AluJb SINE Alu 1 286 -26 713 262 33 0 chr1 36662751 36662934 -245530730 - L2 LINE L2 -1216 2098 1910 329 211 36 79 chr1 36663026 36663222 -245530442 - MLT1J2 LTR MaLR -2 428 266 2162 90 18 0 chr1 36663264 36663567 -245530097 + AluSx SINE Alu 1 308 0 500 370 73 21 chr1 36664170 36664592 -245529072 - L2 LINE L2 -3 3269 2826 2159 131 3 6 chr1 36664595 36664908 -245528756 + AluSx SINE Alu 1 312 0 1135 148 0 0 chr1 36665121 36665310 -245528354 - L1MB3 LINE L1 0 6183 5995 2248 108 3 19 chr1 36665849 36666165 -245527499 - AluSx SINE Alu -1 311 1 2235 129 0 0 chr1 36666167 36666469 -245527195 - AluSx SINE Alu -10 302 1 239 341 88 22 chr1 36666694 36666876 -245526788 + L2 LINE L2 2449 2642 -672 245 307 60 46 chr1 36666917 36667135 -245526529 + L2 LINE L2 2817 3037 -235 496 233 31 8 chr1 36667216 36667345 -245526319 + MER94 DNA DNA 1 132 -2 371 229 158 0 chr1 36667382 36667532 -245526132 - MIR SINE MIR -54 208 36 1008 177 0 0 chr1 36667698 36667856 -245525808 - FAM SINE Alu -8 41 1 690 189 48 92 chr1 36667957 36668184 -245525480 - L2 LINE L2 0 3313 3097 203 222 156 11 chr1 36668177 36668267 -245525397 - L2 LINE L2 -775 2539 2437 * 186 43 0 0 chr1 36669207 36669230 -245524434 + (T)n Simple_repeat Simple_repeat 1 23 0 6567 78 13 33 chr1 36669242 36670390 -245523274 - SVA Other Other -551 1386 433 1264 91 23 91 chr1 36670407 36670792 -245522872 - SVA Other Other -520 866 508 5760 80 28 6 chr1 36670808 36671608 -245522056 - SVA Other Other -520 866 50 342 0 0 0 chr1 36671613 36671651 -245522013 + (GGGAGA)n Simple_repeat Simple_repeat 2 39 0 2398 54 34 0 chr1 36672138 36672257 -245521407 + AluY SINE Alu 2 115 -196 423 0 0 0 chr1 36672257 36672304 -245521360 + (CA)n Simple_repeat Simple_repeat 2 48 0 2398 54 34 0 chr1 36672304 36672478 -245521186 + AluY SINE Alu 115 305 -6 506 220 65 30 chr1 36672530 36672698 -245520966 - Charlie8 DNA MER1_type -2185 232 59 2310 89 0 0 chr1 36672850 36673159 -245520505 + AluSg SINE Alu 1 309 0 1025 127 18 0 chr1 36673935 36674100 -245519564 + Tigger5 DNA MER2_type 2130 2297 -26 916 103 0 0 chr1 36674110 36674227 -245519437 + AluSq/x SINE Alu 1 117 -195 370 80 0 0 chr1 36674227 36674277 -245519387 + Alu SINE Alu 246 295 -7 536 273 28 40 chr1 36674285 36674344 -245519320 - MIR SINE MIR -23 239 181 2145 119 7 0 chr1 36674344 36674639 -245519025 - AluSx SINE Alu -15 297 1 536 273 28 40 chr1 36674639 36674755 -245518909 - MIR SINE MIR -81 181 66 1756 166 3 11 chr1 36674784 36675068 -245518596 + AluJo SINE Alu 18 299 -13 402 21 0 0 chr1 36675137 36675184 -245518480 + (CA)n Simple_repeat Simple_repeat 1 47 0 285 246 56 8 chr1 36675342 36675468 -245518196 + L1ME4a LINE L1 5988 6119 -2 874 111 103 0 chr1 36675550 36675676 -245517988 + AluSx SINE Alu 1 139 -173 1352 106 17 0 chr1 36676301 36676480 -245517184 + AluSx SINE Alu 119 300 -10 624 242 71 79 chr1 36676552 36676804 -245516860 - MIR SINE MIR 0 262 13 349 201 175 25 chr1 36676897 36677019 -245516645 - MIR3 SINE MIR -40 168 42 281 291 17 68 chr1 36677398 36677515 -245516149 - MIR SINE MIR 0 262 152 271 299 0 13 chr1 36677517 36677594 -245516070 + MIR SINE MIR 31 106 -156 1014 200 98 117 chr1 36677594 36678013 -245515651 - L2 LINE L2 -3 3310 2898 2227 90 4 0 chr1 36678013 36678346 -245515318 + AluSc SINE Alu 1 334 0 1014 200 98 117 chr1 36678346 36678395 -245515269 - L2 LINE L2 -415 2898 2850 344 246 108 91 chr1 36678395 36678627 -245515037 + L2 LINE L2 3078 3313 0 369 0 0 0 chr1 36678630 36678671 -245514993 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 583 253 7 33 chr1 36678776 36678926 -245514738 + MIR SINE MIR 36 181 -81 2196 120 3 0 chr1 36679294 36679593 -245514071 - AluSx SINE Alu -12 300 1 1727 48 68 0 chr1 36679653 36679859 -245513805 - AluY SINE Alu -91 220 1 634 250 95 0 chr1 36679859 36680027 -245513637 - MIR SINE MIR -58 204 21 331 252 130 23 chr1 36680420 36680551 -245513113 + MIR3 SINE MIR 12 156 -52 644 284 101 0 chr1 36681049 36681257 -245512407 - MIR SINE MIR -32 230 2 463 259 130 0 chr1 36681283 36681414 -245512250 - MIR3 SINE MIR -21 187 40 292 331 99 8 chr1 36681688 36681809 -245511855 + L2 LINE L2 2969 3100 -172 349 184 66 0 chr1 36682170 36682246 -245511418 + MLT1D LTR MaLR 259 339 -166 2474 93 0 0 chr1 36682310 36682612 -245511052 - AluSx SINE Alu -10 302 1 2433 74 13 3 chr1 36683483 36683782 -245509882 + AluSg SINE Alu 1 302 -8 1863 119 43 40 chr1 36684015 36684318 -245509346 - AluJb SINE Alu -8 304 1 337 274 29 103 chr1 36684376 36684551 -245509113 + MIR SINE MIR 48 209 -53 * 848 153 147 0 chr1 36684543 36684700 -245508964 + MER5A DNA MER1_type 10 189 0 197 340 110 0 chr1 36684836 36684936 -245508728 - L3 LINE CR1 -41 1536 1426 452 282 90 41 chr1 36685094 36685339 -245508325 - L3 LINE CR1 -507 1070 814 664 277 78 19 chr1 36685722 36685890 -245507774 + MIR SINE MIR 23 180 -82 2408 96 0 0 chr1 36685890 36686192 -245507472 + AluSx SINE Alu 1 302 -10 2503 85 0 3 chr1 36686192 36686498 -245507166 + AluY SINE Alu 1 305 -6 664 277 78 19 chr1 36686498 36686534 -245507130 + MIR SINE MIR 179 240 -22 266 308 13 0 chr1 36686739 36686817 -245506847 + L2 LINE L2 3197 3275 -38 2219 113 0 44 chr1 36686863 36687182 -245506482 + AluSx SINE Alu 1 305 -7 221 250 0 0 chr1 36687192 36687248 -245506416 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 444 202 78 39 chr1 36688129 36688258 -245505406 + MIR SINE MIR 79 212 -50 228 309 62 0 chr1 36689035 36689116 -245504548 + MIR SINE MIR 63 148 -114 2028 153 10 0 chr1 36689116 36689423 -245504241 - AluJo SINE Alu -2 310 1 321 223 51 88 chr1 36689466 36689656 -245504008 + MIR SINE MIR 36 219 -43 213 220 0 20 chr1 36689939 36689989 -245503675 + MIR SINE MIR 38 86 -122 414 119 48 71 chr1 36690064 36690148 -245503516 + MLT2B1 LTR ERVL 341 422 -98 230 239 43 54 chr1 36690172 36690264 -245503400 + MIR SINE MIR 63 153 -109 2215 100 0 10 chr1 36690308 36690619 -245503045 + AluSg SINE Alu 1 308 -2 2384 66 10 0 chr1 36690664 36690969 -245502695 - AluY SINE Alu -3 308 1 384 278 47 24 chr1 36691061 36691230 -245502434 + L2 LINE L2 2907 3079 -193 255 217 22 11 chr1 36691746 36691838 -245501826 + CT-rich Low_complexity Low_complexity 4 96 0 2136 116 0 0 chr1 36691848 36692140 -245501524 - AluSx SINE Alu -20 292 1 1916 152 3 3 chr1 36692140 36692443 -245501221 - AluJo SINE Alu -9 303 1 198 354 89 0 chr1 36693221 36693300 -245500364 + MIR SINE MIR 36 121 -87 209 329 29 14 chr1 36693439 36693509 -245500155 + MIR SINE MIR 37 107 -101 247 265 204 0 chr1 36693637 36693735 -245499929 + L2 LINE L2 3129 3246 -26 192 301 96 0 chr1 36694515 36694588 -245499076 + L2 LINE L2 3154 3233 -39 354 304 16 8 chr1 36694728 36694853 -245498811 - MIR3 SINE MIR -78 130 5 182 312 13 26 chr1 36695139 36695216 -245498448 + MIR SINE MIR 182 257 -5 569 276 93 57 chr1 36695255 36695439 -245498225 + MIR SINE MIR 8 205 -57 1830 117 55 14 chr1 36695439 36695561 -245498103 + AluSx SINE Alu 1 117 -195 2797 0 0 0 chr1 36695561 36695868 -245497796 + AluYa5 SINE Alu 1 307 -4 1830 117 55 14 chr1 36695868 36696036 -245497628 + AluSx SINE Alu 117 303 -9 569 276 93 57 chr1 36696036 36696097 -245497567 + MIR SINE MIR 205 262 0 477 306 142 38 chr1 36697253 36697514 -245496150 + L2 LINE L2 2985 3272 0 356 316 103 0 chr1 36697518 36697635 -245496029 - MIR SINE MIR -108 154 26 533 285 130 53 chr1 36697855 36698030 -245495634 + MIR SINE MIR 8 203 -59 2010 128 3 0 chr1 36698030 36698326 -245495338 - AluSx SINE Alu -14 298 2 533 285 130 53 chr1 36698326 36698357 -245495307 + MIR SINE MIR 203 230 -32 666 269 152 75 chr1 36698623 36699077 -245494587 + MLT1K LTR MaLR 100 588 0 245 325 65 0 chr1 36699115 36699192 -245494472 - L2 LINE L2 0 3272 3191 524 236 203 0 chr1 36699388 36699536 -245494128 + MLT1K LTR MaLR 156 333 -255 225 268 72 21 chr1 36699614 36699711 -245493953 - L2 LINE L2 -3 3269 3168 312 267 82 0 chr1 36699825 36699971 -245493693 - L1ME4a LINE L1 -25 6096 5939 1293 146 51 8 chr1 36699981 36700234 -245493430 + L1MD3 LINE L1 7732 7995 0 321 83 0 83 chr1 36700267 36700327 -245493337 + FLAM_A SINE Alu 79 133 0 272 260 256 25 chr1 36700339 36700581 -245493083 - L1ME4a LINE L1 -208 5913 5616 314 254 100 9 chr1 36700594 36700704 -245492960 - MIR SINE MIR -10 252 133 419 314 54 27 chr1 36701277 36701462 -245492202 - MIR SINE MIR -61 201 12 1760 107 176 14 chr1 36701782 36702072 -245491592 - MER1B DNA MER1_type 0 337 1 2155 111 0 7 chr1 36702451 36702758 -245490906 - AluSg SINE Alu -5 305 1 438 286 233 14 chr1 36703582 36703792 -245489872 + MIR SINE MIR 7 262 0 207 227 253 0 chr1 36704036 36704111 -245489553 - MIR SINE MIR -96 112 19 482 253 104 40 chr1 36704352 36704554 -245489110 + MIR SINE MIR 16 230 -32 311 338 58 7 chr1 36705273 36705427 -245488237 - MIR SINE MIR -6 256 95 208 286 24 24 chr1 36705406 36705490 -245488174 - MIR3 SINE MIR -122 86 3 * 21 0 0 0 chr1 36706366 36706387 -245487277 + AT_rich Low_complexity Low_complexity 1 21 0 1729 181 0 3 chr1 36708384 36708687 -245484977 + AluJb SINE Alu 1 302 -10 236 30 30 0 chr1 36708754 36708787 -245484877 + (CA)n Simple_repeat Simple_repeat 1 34 0 266 230 0 40 chr1 36710194 36710268 -245483396 + A-rich Low_complexity Low_complexity 5 75 0 1932 117 27 7 chr1 36711378 36711676 -245481988 + AluSx SINE Alu 1 304 -8 904 126 0 30 chr1 36711843 36711978 -245481686 + MER2 DNA MER2_type 2 132 -213 2284 89 0 0 chr1 36711978 36712280 -245481384 - AluY SINE Alu -9 302 1 1214 145 9 41 chr1 36712282 36712448 -245481216 - AluJo SINE Alu -15 297 127 217 47 47 23 chr1 36712448 36712491 -245481173 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2209 78 0 3 chr1 36712491 36712774 -245480890 - AluSg SINE Alu -28 282 1 1214 145 9 41 chr1 36712774 36712827 -245480837 - AluJo SINE Alu -183 129 84 516 233 93 56 chr1 36712829 36713044 -245480620 + MER2 DNA MER2_type 123 345 0 1471 180 3 39 chr1 36713525 36713831 -245479833 - AluJb SINE Alu -13 299 5 278 152 0 0 chr1 36714154 36714200 -245479464 + Alu SINE Alu 249 294 -6 204 346 13 0 chr1 36714288 36714366 -245479298 + MIR SINE MIR 30 108 -100 338 257 69 22 chr1 36715499 36715668 -245477996 + L1ME LINE L1 5653 5824 -297 369 0 0 0 chr1 36715958 36715999 -245477665 + (CA)n Simple_repeat Simple_repeat 2 42 0 462 308 93 0 chr1 36716157 36716329 -245477335 - MIR SINE MIR -7 255 68 2104 119 0 0 chr1 36716332 36716626 -245477038 + AluSx SINE Alu 1 294 -18 1909 120 10 10 chr1 36716634 36716926 -245476738 + AluSx SINE Alu 1 292 -20 1987 134 7 3 chr1 36718121 36718426 -245475238 - AluSx SINE Alu -6 306 1 1268 209 93 14 chr1 36719050 36719171 -245474493 + AluJo SINE Alu 1 111 -191 306 0 0 0 chr1 36719171 36719205 -245474459 + (CAA)n Simple_repeat Simple_repeat 3 36 0 1268 209 93 14 chr1 36719205 36719361 -245474303 + AluJo SINE Alu 111 300 -2 2259 90 7 0 chr1 36719658 36719957 -245473707 + AluSx SINE Alu 1 301 -11 695 161 265 0 chr1 36720001 36720163 -245473501 + MER3 DNA MER1_type 5 209 0 815 186 93 89 chr1 36720376 36720612 -245473052 + MIR SINE MIR 26 262 0 555 218 14 56 chr1 36720642 36720675 -245472989 + MIR SINE MIR 117 150 -112 2064 116 7 19 chr1 36720675 36720985 -245472679 + AluSg SINE Alu 2 307 -3 555 218 14 56 chr1 36720985 36721093 -245472571 + MIR SINE MIR 150 252 -10 456 272 172 11 chr1 36721178 36721358 -245472306 + MIR SINE MIR 48 256 -6 505 279 85 36 chr1 36721366 36721613 -245472051 + MIR SINE MIR 2 260 -2 231 292 92 33 chr1 36721637 36721757 -245471907 - L2 LINE L2 0 3313 3187 1008 128 12 6 chr1 36721955 36722141 -245471523 - AluJb SINE Alu 0 312 127 2245 92 0 3 chr1 36722296 36722601 -245471063 + AluSc SINE Alu 1 304 -5 1934 111 47 10 chr1 36722613 36722911 -245470753 + AluSx SINE Alu 1 309 -3 2242 85 0 28 chr1 36723229 36723547 -245470117 + AluSg1 SINE Alu 1 309 0 766 247 87 23 chr1 36723602 36723821 -245469843 + MIR SINE MIR 17 249 -13 359 268 148 21 chr1 36723952 36723991 -245469673 - MER5A DNA MER1_type -26 163 130 2034 91 30 20 chr1 36723991 36724289 -245469375 + AluSp SINE Alu 1 301 -12 359 268 148 21 chr1 36724289 36724391 -245469273 - MER5A DNA MER1_type -59 130 4 293 269 173 10 chr1 36724555 36724659 -245469005 - MER5A DNA MER1_type -1 188 68 517 335 50 32 chr1 36724686 36724907 -245468757 + MIR SINE MIR 12 236 -26 1649 186 6 37 chr1 36724983 36725179 -245468485 - 7SLRNA srpRNA srpRNA -3 317 133 1941 155 3 0 chr1 36725179 36725482 -245468182 - AluJo SINE Alu -8 304 1 1649 186 6 37 chr1 36725482 36725612 -245468052 - 7SLRNA srpRNA srpRNA -187 133 1 1436 193 50 0 chr1 36726055 36726335 -245467329 + AluJo SINE Alu 1 294 -18 549 236 156 24 chr1 36726390 36726602 -245467062 - MIR SINE MIR -18 244 5 483 212 26 9 chr1 36726646 36726759 -245466905 + L1ME3A LINE L1 6003 6117 -53 596 251 107 23 chr1 36727058 36727273 -245466391 + MIR SINE MIR 30 262 0 372 241 177 34 chr1 36727317 36727481 -245466183 + MIR SINE MIR 3 186 -67 403 289 38 102 chr1 36727926 36728161 -245465503 - MER102b DNA MER1_type -4 337 118 1440 203 36 70 chr1 36728186 36728651 -245465013 + L1MC5 LINE L1 7002 7448 -513 2296 89 10 0 chr1 36728651 36728954 -245464710 + AluY SINE Alu 1 306 -5 1440 203 36 70 chr1 36728954 36729019 -245464645 + L1MC5 LINE L1 7448 7514 -447 1292 170 115 11 chr1 36729023 36729293 -245464371 + AluJo SINE Alu 5 302 0 322 213 103 22 chr1 36729338 36729474 -245464190 + L1MC5 LINE L1 7646 7792 -169 1324 150 0 5 chr1 36729651 36729858 -245463806 - AluJb SINE Alu -20 292 87 206 176 59 39 chr1 36730160 36730211 -245463453 - L2 LINE L2 -14 3299 3248 351 0 0 0 chr1 36730219 36730258 -245463406 + (CA)n Simple_repeat Simple_repeat 2 40 0 243 270 0 32 chr1 36730285 36730348 -245463316 + L2 LINE L2 3194 3254 -59 269 247 55 0 chr1 36730370 36730443 -245463221 - MIR SINE MIR -95 167 91 1538 157 107 11 chr1 36730540 36730820 -245462844 + AluJo SINE Alu 5 311 -1 228 267 133 0 chr1 36731582 36731657 -245462007 + MIR3 SINE MIR 92 176 -32 336 250 0 0 chr1 36731659 36731755 -245461909 + A-rich Low_complexity Low_complexity 1 96 0 566 244 86 69 chr1 36732950 36733239 -245460425 + L1ME LINE L1 5514 5777 -344 2044 109 3 0 chr1 36733325 36733608 -245460056 + AluSq SINE Alu 1 284 -29 2291 73 0 7 chr1 36734019 36734322 -245459342 - AluY SINE Alu -10 301 1 247 296 99 46 chr1 36734385 36734537 -245459127 - MIR SINE MIR -56 206 47 1968 106 13 13 chr1 36734540 36734841 -245458823 + AluSx SINE Alu 1 301 -11 2131 94 3 3 chr1 36735155 36735454 -245458210 - AluSx SINE Alu -13 299 1 1282 215 118 73 chr1 36735468 36736002 -245457662 + LTR36 LTR ERV1 54 611 0 1110 202 9 5 chr1 36736003 36736216 -245457448 + MLT1D LTR MaLR 292 505 0 1978 92 21 21 chr1 36736364 36736675 -245456989 + AluSx SINE Alu 1 311 0 1211 173 71 0 chr1 36736692 36736917 -245456747 + AluJo SINE Alu 6 246 -66 717 183 15 0 chr1 36736918 36737049 -245456615 + FRAM SINE Alu 1 40 0 462 162 27 0 chr1 36737049 36737123 -245456541 + Tigger4(Zombi) DNA MER2_type 95 170 -2561 2770 111 57 5 chr1 36737126 36737567 -245456097 + Tigger4(Zombi) DNA MER2_type 2268 2731 0 2114 109 0 3 chr1 36737735 36738028 -245455636 + AluSx SINE Alu 1 292 -20 2304 99 0 3 chr1 36738030 36738344 -245455320 + AluSq SINE Alu 1 313 0 314 275 119 9 chr1 36738710 36738819 -245454845 - MLT1K LTR MaLR -464 124 4 410 253 0 0 chr1 36738997 36739076 -245454588 - L2 LINE L2 -4 3268 3190 681 143 0 0 chr1 36739092 36739193 -245454471 + FLAM_C SINE Alu 6 103 -40 830 222 30 56 chr1 36739407 36739472 -245454192 + AluJo SINE Alu 120 185 -127 2179 114 112 83 chr1 36739472 36739944 -245453720 + LTR19A LTR ERV1 1 486 0 830 222 30 56 chr1 36739944 36740077 -245453587 + AluJo SINE Alu 185 298 -14 2383 119 0 0 chr1 36740112 36740422 -245453242 + AluSx SINE Alu 1 310 -2 373 255 19 9 chr1 36740580 36740686 -245452978 - L2 LINE L2 -250 3022 2916 2315 117 0 0 chr1 36740697 36740996 -245452668 + AluSx SINE Alu 1 299 -13 232 313 25 0 chr1 36741125 36741205 -245452459 + LTR67 LTR ERVL 115 196 -361 416 274 65 43 chr1 36741664 36741850 -245451814 + MLT1L LTR MaLR 424 613 -2 629 274 30 0 chr1 36741851 36742015 -245451649 + MIR SINE MIR 94 262 0 2325 110 3 0 chr1 36742181 36742480 -245451184 - AluSx SINE Alu -12 300 1 2310 102 10 13 chr1 36742486 36742800 -245450864 - AluSq SINE Alu 0 313 1 208 217 0 0 chr1 36743075 36743121 -245450543 - MIR SINE MIR -216 46 1 283 224 0 0 chr1 36743212 36743270 -245450394 - MLT1I LTR MaLR 0 409 352 766 198 121 6 chr1 36743376 36743533 -245450131 - MER63A DNA MER1_type -35 175 1 322 226 18 122 chr1 36743533 36743697 -245449967 - MLT1I LTR MaLR -204 205 59 206 203 76 51 chr1 36743770 36743849 -245449815 - L2 LINE L2 -1366 1948 1868 196 329 35 0 chr1 36743908 36743993 -245449671 - MIR SINE MIR -2 260 173 1250 131 0 0 chr1 36744013 36744181 -245449483 - AluSc SINE Alu -13 296 129 290 244 11 67 chr1 36744187 36744277 -245449387 - MIR SINE MIR -106 156 72 781 249 64 67 chr1 36744301 36744615 -245449049 + MLT1I LTR MaLR 1 315 -94 2476 100 0 0 chr1 36744615 36744926 -245448738 - AluSx SINE Alu -1 311 1 781 249 64 67 chr1 36744926 36745016 -245448648 + MLT1I LTR MaLR 315 404 -5 329 74 6 6 chr1 36745510 36745567 -245448097 - Alu SINE Alu -258 41 1 2056 155 0 0 chr1 36745573 36745870 -245447794 + AluJb SINE Alu 1 297 -15 1408 209 80 25 chr1 36745870 36746268 -245447396 - MER44D DNA MER2_type -130 475 1 1614 269 35 21 chr1 36746270 36746756 -245446908 - MLT1J LTR MaLR -7 504 12 21 36 0 0 chr1 36747034 36747062 -245446602 + GC_rich Low_complexity Low_complexity 1 28 0 2894 91 23 80 chr1 36747113 36748153 -245445511 + SVA Other Other 393 868 -520 21 57 0 0 chr1 36748207 36748242 -245445422 + GC_rich Low_complexity Low_complexity 1 35 0 7151 65 3 41 chr1 36748268 36749260 -245444404 + SVA Other Other 433 1386 0 2179 119 3 0 chr1 36749551 36749846 -245443818 + AluSc SINE Alu 14 309 0 1982 148 0 17 chr1 36749849 36750147 -245443517 + AluSg SINE Alu 1 293 -17 464 274 37 44 chr1 36750147 36750282 -245443382 + L2 LINE L2 3137 3270 -2 592 156 230 37 chr1 36750383 36750518 -245443146 - AluJb SINE Alu -18 294 134 2405 100 7 0 chr1 36750518 36750827 -245442837 - AluSx SINE Alu -1 311 1 556 218 30 8 chr1 36751639 36751772 -245441892 - MLT1G LTR MaLR 0 590 455 795 241 6 0 chr1 36751775 36751937 -245441727 + MLT1F LTR MaLR 4 166 -376 815 127 0 108 chr1 36751938 36752096 -245441568 + AluJo SINE Alu 1 141 -171 1145 168 15 10 chr1 36752098 36752301 -245441363 + AluJo SINE Alu 98 301 -11 1638 185 92 14 chr1 36752301 36752658 -245441006 + MLT1F LTR MaLR 158 542 0 980 224 151 51 chr1 36752658 36753019 -245440645 - MLT1G LTR MaLR -131 459 9 2711 41 0 13 chr1 36753232 36753547 -245440117 - AluY SINE Alu 0 311 1 2258 111 0 10 chr1 36753547 36753845 -245439819 - AluSx SINE Alu -17 295 1 287 283 54 11 chr1 36754013 36754105 -245439559 - MIR SINE MIR -146 116 21 307 344 10 0 chr1 36754614 36754710 -245438954 - L2 LINE L2 -30 3242 3146 1242 211 11 58 chr1 36754811 36755102 -245438562 + L1ME2 LINE L1 5804 6076 -88 2212 106 3 14 chr1 36755102 36755395 -245438269 + AluSg SINE Alu 1 290 -20 1242 211 11 58 chr1 36755395 36755464 -245438200 + L1ME2 LINE L1 6076 6147 -17 2155 119 20 7 chr1 36755499 36755793 -245437871 + AluSx SINE Alu 4 301 -11 1743 205 128 51 chr1 36755793 36755930 -245437734 + MLT1F LTR MaLR 13 138 -404 2262 114 0 7 chr1 36755930 36756227 -245437437 + AluSq SINE Alu 1 295 -18 1743 205 128 51 chr1 36756227 36756581 -245437083 + MLT1F LTR MaLR 138 542 0 2947 108 5 0 chr1 36756905 36757331 -245436333 + MSTC LTR MaLR 1 428 0 590 300 27 8 chr1 36757337 36757570 -245436094 - MIR SINE MIR 0 262 30 1469 96 0 25 chr1 36757958 36758157 -245435507 + AluSg SINE Alu 1 194 -116 535 261 51 13 chr1 36758175 36758332 -245435332 + MLT1K LTR MaLR 16 178 -410 382 167 0 0 chr1 36758418 36758478 -245435186 + AluSg/q SINE Alu 191 250 -53 1300 147 0 45 chr1 36758478 36758702 -245434962 + AluSg/x SINE Alu 85 298 -14 907 235 50 87 chr1 36758926 36759283 -245434381 - L2 LINE L2 0 3313 2970 6363 127 21 21 chr1 36759286 36760255 -245433409 + LTR5 LTR ERVK 1 969 0 4213 102 29 2 chr1 36760255 36760881 -245432783 + HERVK LTR ERVK 1 643 -6600 3001 77 36 18 chr1 36760896 36762042 -245431622 + HERVK11 LTR ERVK 206 2710 -5243 * 7748 49 2 0 chr1 36762024 36762995 -245430669 + HERVK11 LTR ERVK 2912 3884 -4069 900 108 7 0 chr1 36762969 36763108 -245430556 + HERVK11 LTR ERVK 4462 4601 -3352 * 7731 64 6 1 chr1 36763106 36764144 -245429520 + HERVK11 LTR ERVK 5525 6620 -1333 1506 145 23 87 chr1 36764153 36764463 -245429201 + LTR5 LTR ERVK 680 969 0 488 120 98 198 chr1 36764480 36764737 -245428927 + L1MC4 LINE L1 7827 7995 0 1988 148 30 3 chr1 36764748 36765046 -245428618 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 36765048 36765070 -245428594 + AT_rich Low_complexity Low_complexity 1 22 0 271 259 0 0 chr1 36765070 36765128 -245428536 - L2 LINE L2 -342 2971 2914 1584 174 0 8 chr1 36765145 36765404 -245428260 + AluJb SINE Alu 51 307 -5 604 258 267 19 chr1 36765522 36765952 -245427712 + MLT1K LTR MaLR 16 552 -36 300 321 38 34 chr1 36765994 36766153 -245427511 - L2 LINE L2 -218 3054 2892 1583 180 33 23 chr1 36766153 36766459 -245427205 + AluJo SINE Alu 2 310 -2 300 321 38 34 chr1 36766459 36766536 -245427128 - L2 LINE L2 -380 2892 2817 799 105 6 39 chr1 36766536 36766717 -245426947 + (GAA)n Simple_repeat Simple_repeat 3 177 0 604 270 58 58 chr1 36766769 36767062 -245426602 - L2 LINE L2 -457 2857 2565 479 276 46 50 chr1 36767084 36767453 -245426211 + MLT1H LTR MaLR 1 410 -132 1310 195 152 40 chr1 36767453 36767573 -245426091 - MLT1A1 LTR MaLR 0 365 260 1927 136 25 0 chr1 36767573 36767729 -245425935 - AluJb SINE Alu -19 293 125 207 0 0 0 chr1 36767729 36767752 -245425912 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1927 136 25 0 chr1 36767752 36767881 -245425783 - AluJb SINE Alu -187 125 1 1310 195 152 40 chr1 36767881 36768088 -245425576 - MLT1A1 LTR MaLR -105 260 1 673 274 10 10 chr1 36768088 36768289 -245425375 - MIR SINE MIR -60 202 2 1667 129 7 44 chr1 36768910 36769181 -245424483 + AluSx SINE Alu 34 294 -18 574 324 34 5 chr1 36769196 36769403 -245424261 - MIR SINE MIR -31 231 19 249 105 0 0 chr1 36769427 36769465 -245424199 - L1MA1 LINE L1 -4 6298 6261 986 154 10 62 chr1 36769630 36769705 -245423959 + MER5A DNA MER1_type 2 79 -110 2497 93 0 3 chr1 36769705 36770016 -245423648 + AluSq SINE Alu 1 310 -3 986 154 10 62 chr1 36770016 36770135 -245423529 + MER5A DNA MER1_type 79 186 -3 690 201 30 0 chr1 36770679 36770813 -245422851 + MIR SINE MIR 47 184 -78 438 213 66 33 chr1 36770838 36770960 -245422704 + MIR SINE MIR 68 193 -69 2295 116 10 10 chr1 36770961 36771272 -245422392 - AluSx SINE Alu -1 311 1 2204 90 52 0 chr1 36771286 36771576 -245422088 - AluSx SINE Alu -7 305 1 624 304 72 10 chr1 36771970 36772177 -245421487 + MIR SINE MIR 37 256 -6 1542 182 128 3 chr1 36772232 36772584 -245421080 - MSTD LTR MaLR 0 396 1 2178 130 0 3 chr1 36772599 36772899 -245420765 - AluSx SINE Alu -11 301 3 356 273 58 58 chr1 36772936 36773108 -245420556 + MLT1J LTR MaLR 12 183 -328 1981 172 36 45 chr1 36773114 36773584 -245420080 + MLT1C LTR MaLR 1 466 -1 537 294 73 0 chr1 36773939 36774116 -245419548 + MIR SINE MIR 2 191 -71 200 273 146 27 chr1 36774259 36774369 -245419295 - L2 LINE L2 0 3272 3150 2292 66 42 10 chr1 36774430 36774718 -245418946 - AluY SINE Alu -14 297 1 212 241 56 128 chr1 36774883 36775078 -245418586 - MIR3 SINE MIR -4 204 24 2128 152 0 0 chr1 36775186 36775489 -245418175 + AluJb SINE Alu 3 305 -7 2144 96 4 0 chr1 36775675 36775945 -245417719 + AluSq SINE Alu 1 271 -42 247 225 79 34 chr1 36776313 36776402 -245417262 - L2 LINE L2 -214 3058 2966 267 221 180 0 chr1 36777427 36777549 -245416115 - MIR3 SINE MIR -36 172 29 236 286 165 0 chr1 36777668 36777759 -245415905 - MIR3 SINE MIR -3 205 100 187 331 153 6 chr1 36778274 36778431 -245415233 + L2 LINE L2 2356 2535 -779 209 339 165 15 chr1 36778716 36779043 -245414621 + L2 LINE L2 2933 3308 -5 2154 114 0 10 chr1 36780366 36780664 -245413000 - AluSx SINE Alu -11 301 7 226 225 70 42 chr1 36780698 36780769 -245412895 - L2 LINE L2 -6 3307 3235 1201 262 65 16 chr1 36780880 36781266 -245412398 - L2 LINE L2 0 3313 2909 340 307 0 0 chr1 36781895 36781996 -245411668 - MIR SINE MIR -14 248 148 267 314 88 46 chr1 36782533 36782772 -245410892 + L2 LINE L2 1685 1933 -1381 2540 70 3 0 chr1 36782905 36783203 -245410461 - AluSp SINE Alu -14 299 1 2264 107 0 3 chr1 36783216 36783506 -245410158 - AluSg SINE Alu -21 289 1 438 302 197 47 chr1 36783776 36784822 -245408842 + L2 LINE L2 2090 3300 -13 565 276 191 5 chr1 36784848 36785058 -245408606 + MIR SINE MIR 2 250 -12 21 0 0 0 chr1 36785065 36785086 -245408578 + AT_rich Low_complexity Low_complexity 1 21 0 895 153 0 15 chr1 36785086 36785223 -245408441 + AluJo SINE Alu 1 135 -177 365 319 121 0 chr1 36785404 36785561 -245408103 + MIR SINE MIR 31 206 -56 373 272 149 56 chr1 36785689 36785835 -245407829 + MIR SINE MIR 36 206 -56 1020 214 37 0 chr1 36785835 36786050 -245407614 + MER58A DNA MER1_type 2 224 0 373 272 149 56 chr1 36786050 36786098 -245407566 + MIR SINE MIR 206 248 -14 4218 103 27 31 chr1 36786340 36787017 -245406647 - L1MA8 LINE L1 0 6291 5616 2089 138 0 0 chr1 36787017 36787306 -245406358 - AluSx SINE Alu -19 293 5 4218 103 27 31 chr1 36787306 36787377 -245406287 - L1MA8 LINE L1 -675 5616 5546 496 209 17 191 chr1 36787407 36787637 -245406027 - MER91B DNA MER1_type 0 190 1 211 191 0 56 chr1 36788018 36788107 -245405557 + (GGCTG)n Simple_repeat Simple_repeat 2 85 0 255 316 160 11 chr1 36788333 36788520 -245405144 - L2 LINE L2 -218 3054 2840 2060 156 6 13 chr1 36789489 36789803 -245403861 - AluJo SINE Alu 0 312 1 374 278 150 9 chr1 36789884 36790078 -245403586 - MIR SINE MIR -12 250 34 277 377 0 0 chr1 36790103 36790217 -245403447 + MIR SINE MIR 32 145 -63 228 246 0 72 chr1 36790625 36790694 -245402970 - MIR SINE MIR -110 152 89 321 226 157 25 chr1 36791197 36791401 -245402263 + L1ME4a LINE L1 5870 6100 -21 2885 121 2 46 chr1 36791401 36791616 -245402048 - Tigger2a DNA MER2_type -2274 434 248 2264 116 0 0 chr1 36791616 36791908 -245401756 - AluSx SINE Alu -20 292 1 2885 121 2 46 chr1 36791908 36792146 -245401518 - Tigger2a DNA MER2_type -2460 248 1 436 244 92 43 chr1 36792861 36793025 -245400639 - MIR SINE MIR -83 179 8 435 262 19 9 chr1 36793077 36793184 -245400480 - MIR SINE MIR -119 143 36 310 330 0 11 chr1 36793460 36793551 -245400113 + MIR SINE MIR 38 127 -81 270 216 167 10 chr1 36794145 36794247 -245399417 - L1ME4a LINE L1 -188 5933 5816 2156 126 0 3 chr1 36794541 36794835 -245398829 - AluSx SINE Alu -19 293 1 2259 129 3 0 chr1 36795810 36796121 -245397543 + AluSx SINE Alu 1 312 0 225 0 0 0 chr1 36796335 36796360 -245397304 + (TG)n Simple_repeat Simple_repeat 1 25 0 361 210 46 154 chr1 36796427 36796640 -245397024 - L1MC5 LINE L1 -227 7734 7500 2251 113 0 0 chr1 36796640 36796931 -245396733 - AluSx SINE Alu -20 292 2 361 210 46 154 chr1 36796931 36796976 -245396688 - L1MC5 LINE L1 -461 7500 7452 747 211 0 0 chr1 36796976 36797109 -245396555 - FLAM_C SINE Alu 0 133 1 361 210 46 154 chr1 36797109 36797310 -245396354 - L1MC5 LINE L1 -509 7452 7324 1255 281 90 7 chr1 36797519 36798059 -245395605 - L1ME2 LINE L1 -210 5952 5369 2380 275 105 19 chr1 36798101 36799527 -245394137 + L2 LINE L2 1756 3309 -4 217 291 173 27 chr1 36799545 36799655 -245394009 + L2 LINE L2 3143 3268 -4 2314 108 0 0 chr1 36799656 36799953 -245393711 - AluSx SINE Alu -15 297 1 378 247 80 67 chr1 36800301 36800451 -245393213 - L1ME4a LINE L1 -3 6118 5967 204 40 0 0 chr1 36800463 36800488 -245393176 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1416 181 68 19 chr1 36800491 36800757 -245392907 - AluJb SINE Alu -33 279 1 2041 131 64 22 chr1 36801154 36801514 -245392150 - THE1C LTR MaLR 0 375 1 8520 149 54 24 chr1 36801797 36802775 -245390889 + L1 LINE L1 3242 4190 -1956 1979 143 11 0 chr1 36802775 36803055 -245390609 + AluSx SINE Alu 1 283 -29 8520 149 54 24 chr1 36803055 36803069 -245390595 + L1 LINE L1 4190 4202 -1944 2182 129 7 0 chr1 36803069 36803379 -245390285 + AluSx SINE Alu 1 312 0 8520 149 54 24 chr1 36803379 36804103 -245389561 + L1 LINE L1 4202 5009 -1137 2279 115 0 0 chr1 36804113 36804409 -245389255 - AluSx SINE Alu -12 300 5 3804 124 44 15 chr1 36804409 36805087 -245388577 - L1MC1 LINE L1 -440 5893 5186 2274 116 0 13 chr1 36805087 36805397 -245388267 - AluSx SINE Alu -4 308 3 3804 124 44 15 chr1 36805397 36805486 -245388178 - L1MC1 LINE L1 -1147 5186 5101 586 260 68 7 chr1 36805499 36805645 -245388019 + L2 LINE L2 3112 3266 -47 1260 253 142 52 chr1 36805757 36806547 -245387117 + L1MEd LINE L1 285 1145 -4974 253 167 10 128 chr1 36806551 36806653 -245387011 - LTR50 LTR ERVL -17 771 667 432 305 17 0 chr1 36806924 36807042 -245386622 + MIR3 SINE MIR 68 187 -21 2234 92 20 10 chr1 36807378 36807673 -245385991 - AluSg SINE Alu -12 298 1 759 289 89 22 chr1 36807720 36808193 -245385471 + L1ME3A LINE L1 5290 5809 -353 435 312 50 55 chr1 36808321 36808523 -245385141 + L1ME3A LINE L1 5962 6162 -8 1890 131 34 17 chr1 36808741 36809038 -245384626 - AluY SINE Alu -9 302 1 338 306 49 21 chr1 36809222 36809366 -245384298 - L1M4 LINE L1 -1900 4246 4099 567 227 0 93 chr1 36809367 36809517 -245384147 + MIR3 SINE MIR 21 156 -52 1558 118 14 9 chr1 36809887 36810107 -245383557 - AluSg/x SINE Alu -7 303 83 2712 55 0 0 chr1 36810112 36810423 -245383241 - AluY SINE Alu 0 311 1 2215 93 48 0 chr1 36810423 36810713 -245382951 - AluSq SINE Alu -9 304 1 352 166 74 58 chr1 36810883 36810986 -245382678 + MIR SINE MIR 71 172 -63 2139 122 7 0 chr1 36811193 36811481 -245382183 + AluSx SINE Alu 1 290 -22 668 193 0 36 chr1 36811850 36811990 -245381674 + L2 LINE L2 3179 3313 0 541 308 139 51 chr1 36812301 36812710 -245380954 - L2 LINE L2 0 3272 2828 266 245 118 10 chr1 36812867 36812969 -245380695 + MIR SINE MIR 68 180 -82 1094 217 10 5 chr1 36813294 36813501 -245380163 - MIR SINE MIR -25 237 30 384 283 143 26 chr1 36814264 36814494 -245379170 - L2 LINE L2 -457 2857 2601 227 333 0 67 chr1 36814474 36814609 -245379055 + MIR SINE MIR 80 205 -57 * 206 250 104 0 chr1 36814708 36814756 -245378908 - MIR SINE MIR -145 117 65 188 268 167 25 chr1 36814848 36815046 -245378618 - L2 LINE L2 -243 3029 2804 219 276 40 0 chr1 36815088 36815164 -245378500 - L2 LINE L2 -601 2713 2635 659 291 62 26 chr1 36815390 36815617 -245378047 + MIR SINE MIR 22 256 -6 912 148 153 60 chr1 36817001 36817054 -245376610 - L1MB7 LINE L1 -20 6164 6117 2186 98 6 50 chr1 36817054 36817371 -245376293 + AluSx SINE Alu 3 305 -7 912 148 153 60 chr1 36817371 36817533 -245376131 - L1MB7 LINE L1 -67 6117 5929 1069 245 249 31 chr1 36818644 36819219 -245374445 + L2 LINE L2 2631 3313 0 398 221 14 107 chr1 36819252 36819353 -245374311 + MIR SINE MIR 103 189 -73 2263 118 0 13 chr1 36819353 36819487 -245374177 + AluSg SINE Alu 1 135 -175 2140 127 7 3 chr1 36819487 36819787 -245373877 + AluSg SINE Alu 1 301 -9 2263 118 0 13 chr1 36819787 36819965 -245373699 + AluSg SINE Alu 135 309 -1 398 221 14 107 chr1 36819965 36820003 -245373661 + MIR SINE MIR 189 229 -33 4425 44 0 0 chr1 36820294 36820817 -245372847 - L1PA5 LINE L1 -3 6151 5629 302 258 296 25 chr1 36821090 36821368 -245372296 + L2 LINE L2 2720 3073 -240 252 0 0 0 chr1 36821504 36821532 -245372132 + (TTTCC)n Simple_repeat Simple_repeat 5 32 0 763 215 163 52 chr1 36821556 36821650 -245372014 + L2 LINE L2 2973 3055 -258 878 148 0 15 chr1 36821650 36821785 -245371879 + FLAM_C SINE Alu 1 133 0 763 215 163 52 chr1 36821785 36821997 -245371667 + L2 LINE L2 3055 3313 0 233 337 82 10 chr1 36822181 36822279 -245371385 + L2 LINE L2 3204 3308 -5 1006 161 21 5 chr1 36822534 36822720 -245370944 - MER53 DNA DNA 0 189 1 184 233 164 14 chr1 36823587 36823660 -245370004 - MIR SINE MIR -3 259 176 746 234 62 70 chr1 36823677 36823852 -245369812 + MIR SINE MIR 18 192 -70 1820 145 0 42 chr1 36823852 36824162 -245369502 + AluJb SINE Alu 1 297 -15 746 234 62 70 chr1 36824162 36824230 -245369434 + MIR SINE MIR 192 259 -3 227 292 100 39 chr1 36824234 36824364 -245369300 - MIR3 SINE MIR -68 140 3 260 229 14 43 chr1 36824584 36824654 -245369010 - L2 LINE L2 -943 2371 2304 205 297 0 99 chr1 36824774 36824865 -245368799 - L2 LINE L2 -258 3014 2933 2951 147 24 19 chr1 36824959 36825531 -245368133 + LTR51 LTR ERV1 2 671 0 2239 116 3 0 chr1 36825628 36825929 -245367735 - AluSq SINE Alu -11 302 1 1757 216 58 73 chr1 36825974 36826524 -245367140 + MLT1F1 LTR MaLR 1 567 0 197 369 64 21 chr1 36826533 36826769 -245366895 - L2 LINE L2 -655 2659 2414 349 252 151 17 chr1 36827008 36827127 -245366537 - L2 LINE L2 -3 3310 3176 774 192 19 83 chr1 36827179 36827445 -245366219 + MER33 DNA MER1_type 1 249 -75 263 194 0 69 chr1 36827511 36827583 -245366081 + MER33 DNA MER1_type 258 324 0 513 287 122 51 chr1 36827992 36828028 -245365636 + L2 LINE L2 2895 2927 -345 892 205 102 19 chr1 36828028 36828233 -245365431 - MER58A DNA MER1_type -1 223 2 513 287 122 51 chr1 36828233 36828548 -245365116 + L2 LINE L2 2927 3271 -1 226 359 152 0 chr1 36829695 36829840 -245363824 - MIR SINE MIR -48 214 48 200 250 0 18 chr1 36829924 36829980 -245363684 + L2 LINE L2 3207 3261 -11 * 595 232 40 28 chr1 36829977 36830154 -245363510 - MIR SINE MIR -43 219 41 277 289 289 18 chr1 36830268 36830434 -245363230 + L3 LINE CR1 1259 1469 -108 2022 89 21 18 chr1 36830777 36831090 -245362574 + AluSx SINE Alu 3 316 0 262 264 189 40 chr1 36831357 36831558 -245362106 + L2 LINE L2 2898 3128 -144 827 177 21 0 chr1 36831884 36832121 -245361543 + CT-rich Low_complexity Low_complexity 1 242 0 2038 141 13 3 chr1 36832135 36832440 -245361224 - AluSx SINE Alu -4 308 1 2421 92 3 0 chr1 36832488 36832791 -245360873 + AluSg SINE Alu 1 304 -6 425 243 96 8 chr1 36832828 36832991 -245360673 + MIR3 SINE MIR 31 198 -40 599 209 108 13 chr1 36832991 36833149 -245360515 + MIR SINE MIR 20 192 -70 334 304 18 27 chr1 36833287 36833399 -245360265 - MIR3 SINE MIR -14 194 84 471 133 67 153 chr1 36834133 36834152 -245359512 + L1ME4a LINE L1 5960 5979 -142 1122 164 198 57 chr1 36834152 36834415 -245359249 + AluJo SINE Alu 3 302 0 471 133 67 153 chr1 36834415 36834545 -245359119 + L1ME4a LINE L1 5979 6096 -25 204 212 98 98 chr1 36835225 36835357 -245358307 - L2 LINE L2 -209 3063 2932 282 293 47 47 chr1 36835915 36836065 -245357599 - MIR3 SINE MIR -29 179 30 253 236 181 24 chr1 36836729 36836856 -245356808 + MIR3 SINE MIR 21 167 -41 398 250 213 0 chr1 36837142 36837278 -245356386 + MIR3 SINE MIR 31 195 -13 783 77 10 0 chr1 36837519 36837623 -245356041 + L1PA10 LINE L1 6061 6165 -3 312 281 22 82 chr1 36838227 36838362 -245355302 - MIR3 SINE MIR 0 208 82 251 301 63 28 chr1 36838548 36838715 -245354949 + MIR SINE MIR 5 192 -70 3010 176 39 7 chr1 36839588 36839903 -245353761 + LTR64 LTR ERVK 1 342 -216 2354 65 10 7 chr1 36839903 36840196 -245353468 - AluSp SINE Alu -17 296 3 3010 176 39 7 chr1 36840196 36840421 -245353243 + LTR64 LTR ERVK 342 558 0 440 304 62 6 chr1 36840692 36840853 -245352811 - MIR SINE MIR -80 182 13 378 294 31 55 chr1 36840960 36841123 -245352541 + MIR SINE MIR 68 226 -36 438 359 145 15 chr1 36841633 36842026 -245351638 + LTR67 LTR ERVL 114 557 0 342 319 140 0 chr1 36842733 36842890 -245350774 - MIR3 SINE MIR -7 201 23 365 170 140 20 chr1 36843589 36843689 -245349975 + MIR3 SINE MIR 70 181 -27 250 256 163 0 chr1 36843702 36843788 -245349876 + L2 LINE L2 3168 3267 -5 217 224 0 0 chr1 36843801 36843850 -245349814 - MIR3 SINE MIR -6 202 154 1775 214 121 65 chr1 36843853 36844571 -245349093 + MER20B DNA MER1_type 23 780 -3 495 288 33 0 chr1 36844576 36844729 -245348935 - MIR3 SINE MIR -49 159 2 2043 133 0 3 chr1 36844906 36845208 -245348456 - AluSx SINE Alu -5 307 7 1797 167 0 0 chr1 36845234 36845515 -245348149 - AluJo SINE Alu -31 281 1 284 306 20 61 chr1 36845537 36845684 -245347980 + L2 LINE L2 3099 3239 -33 272 229 56 108 chr1 36847808 36848001 -245345663 - MIR SINE MIR -50 212 20 2378 84 0 3 chr1 36848044 36848354 -245345310 + AluSp SINE Alu 1 309 -4 481 284 91 25 chr1 36848386 36848583 -245345081 - MIR SINE MIR 0 262 53 1225 181 9 18 chr1 36849150 36849371 -245344293 + MER20 DNA MER1_type 1 219 0 287 265 57 11 chr1 36849421 36849509 -245344155 - MIR SINE MIR -55 153 76 211 286 18 0 chr1 36849507 36849563 -245344101 - L2 LINE L2 -1 3312 3256 * 558 303 152 24 chr1 36849621 36849918 -245343746 - L2 LINE L2 -49 3223 2889 382 131 0 0 chr1 36849921 36849992 -245343672 + Alu SINE Alu 1 53 -248 2262 86 0 0 chr1 36850278 36850570 -245343094 + AluSg SINE Alu 1 292 -18 2215 62 0 0 chr1 36850572 36850848 -245342816 + AluY SINE Alu 1 276 -35 1894 149 10 0 chr1 36850950 36851246 -245342418 + AluJo SINE Alu 8 306 -6 302 299 43 78 chr1 36851515 36851746 -245341918 + L1M4 LINE L1 3125 3347 -2799 1845 131 21 0 chr1 36852699 36852982 -245340682 - AluSx SINE Alu -9 303 15 226 231 77 0 chr1 36853645 36853710 -245339954 + MIR SINE MIR 39 108 -100 321 346 27 32 chr1 36853728 36853913 -245339751 + MER5A DNA MER1_type 3 186 -3 414 255 48 48 chr1 36853743 36853888 -245339776 - MER5B DNA MER1_type -3 175 31 620 317 54 73 chr1 36853908 36854280 -245339384 - L3 LINE CR1 -44 1533 1169 1591 173 38 3 chr1 36854456 36854745 -245338919 + AluJo SINE Alu 1 299 -13 2092 123 10 0 chr1 36854777 36855078 -245338586 + AluSg SINE Alu 1 304 -6 2142 109 0 0 chr1 36855330 36855624 -245338040 + AluY SINE Alu 1 294 -17 180 0 0 0 chr1 36855627 36855647 -245338017 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 274 299 150 17 chr1 36856071 36856272 -245337392 - MIR SINE MIR -13 249 16 2423 65 0 3 chr1 36856373 36856683 -245336981 + AluY SINE Alu 1 309 -2 1786 86 0 0 chr1 36856691 36856925 -245336739 + AluY SINE Alu 2 235 -76 1093 117 6 0 chr1 36856927 36857089 -245336575 + AluSg/x SINE Alu 146 308 -4 1371 142 73 4 chr1 36857089 36857349 -245336315 + L1MB7 LINE L1 5795 6072 -112 5718 175 41 10 chr1 36857349 36858387 -245335277 - HERVS71 LTR ERV1 -6507 2471 1401 737 219 107 0 chr1 36858768 36858937 -245334727 - HERVS71 LTR ERV1 -7929 1049 863 1880 93 4 0 chr1 36859047 36859294 -245334370 - AluSx SINE Alu -64 248 1 511 254 35 30 chr1 36859468 36859637 -245334027 + MIR SINE MIR 2 171 -91 3942 249 125 37 chr1 36859768 36861567 -245332097 + L2 LINE L2 1275 3270 -43 355 291 0 71 chr1 36861619 36861671 -245331993 + MIR SINE MIR 117 171 -91 2350 98 0 0 chr1 36861671 36861977 -245331687 - AluSg SINE Alu -4 306 1 355 291 0 71 chr1 36861977 36862065 -245331599 + MIR SINE MIR 171 247 -15 413 314 43 0 chr1 36862455 36862595 -245331069 + MIR SINE MIR 105 250 -12 381 276 60 76 chr1 36862660 36862752 -245330912 + MIR SINE MIR 32 121 -141 2428 80 0 13 chr1 36862752 36863066 -245330598 - AluSq SINE Alu -2 311 2 381 276 60 76 chr1 36863066 36863158 -245330506 + MIR SINE MIR 121 213 -49 27 29 0 0 chr1 36863186 36863220 -245330444 + AT_rich Low_complexity Low_complexity 1 34 0 186 139 0 93 chr1 36863465 36863508 -245330156 + L2 LINE L2 3233 3271 -1 262 365 91 15 chr1 36864052 36864249 -245329415 - L2 LINE L2 -683 2631 2420 2163 115 0 6 chr1 36864313 36864627 -245329037 - AluSq SINE Alu -1 312 1 425 309 71 0 chr1 36864888 36865056 -245328608 + MIR SINE MIR 13 192 -70 206 291 111 0 chr1 36865134 36865251 -245328413 - L2 LINE L2 -223 3049 2920 314 365 19 0 chr1 36865885 36866041 -245327623 + L2 LINE L2 2226 2384 -930 453 361 64 19 chr1 36866041 36866510 -245327154 + L2 LINE L2 2685 3270 -2 485 263 36 7 chr1 36866780 36866917 -245326747 + MIR SINE MIR 24 164 -98 2377 93 0 0 chr1 36866949 36867261 -245326403 - AluSq SINE Alu -1 312 1 192 277 21 0 chr1 36867288 36867335 -245326329 - L2 LINE L2 -20 3252 3205 199 295 16 16 chr1 36868140 36868201 -245325463 - MIR SINE MIR -105 103 43 356 253 74 11 chr1 36868390 36868485 -245325179 - MIR SINE MIR -62 146 46 231 36 0 0 chr1 36868505 36868533 -245325131 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr1 36868689 36868716 -245324948 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1558 161 0 42 chr1 36868716 36869002 -245324662 - AluJo SINE Alu -27 285 12 215 261 22 43 chr1 36869615 36869707 -245323957 + L2 LINE L2 2490 2579 -735 3501 117 33 23 chr1 36869810 36870332 -245323332 + MER1A DNA MER1_type 1 527 0 808 264 25 17 chr1 36870378 36870613 -245323051 - MIR SINE MIR -8 254 18 1106 158 26 18 chr1 36870663 36870891 -245322773 + MER96B DNA MER1_type? 133 362 -55 813 301 81 13 chr1 36870897 36871293 -245322371 + L2 LINE L2 2835 3257 -56 192 262 82 0 chr1 36871653 36871714 -245321950 - MIR3 SINE MIR -19 189 124 801 222 169 30 chr1 36871788 36872090 -245321574 - L2 LINE L2 -2 3311 2968 470 216 22 86 chr1 36872123 36872262 -245321402 + MLT1J LTR MaLR 262 391 -120 581 241 7 22 chr1 36872333 36872470 -245321194 + MER63A DNA MER1_type 72 206 -4 229 279 36 36 chr1 36872472 36872583 -245321081 + MLT1J LTR MaLR 394 504 -7 363 306 136 59 chr1 36873139 36873580 -245320084 + L2 LINE L2 2373 2847 -467 974 191 106 0 chr1 36873590 36873778 -245319886 - MER3 DNA MER1_type -1 208 1 193 250 0 0 chr1 36873819 36873863 -245319801 + L2 LINE L2 2998 3041 -231 1810 123 31 24 chr1 36873963 36874256 -245319408 + AluSx SINE Alu 1 295 -17 309 172 0 0 chr1 36874273 36874331 -245319333 + Alu SINE Alu 245 302 0 246 167 24 0 chr1 36874331 36874373 -245319291 + L2 LINE L2 3141 3183 -89 602 228 66 56 chr1 36874659 36874856 -245318808 + MIR SINE MIR 44 242 -20 353 307 22 0 chr1 36874955 36875092 -245318572 - MIR3 SINE MIR -15 193 54 646 257 59 21 chr1 36875236 36875423 -245318241 - MIR SINE MIR -56 206 13 191 310 17 0 chr1 36875446 36875504 -245318160 - L2 LINE L2 -4 3309 3251 316 238 81 113 chr1 36875657 36875695 -245317969 + MIR SINE MIR 108 146 -116 2119 127 0 0 chr1 36875695 36876002 -245317662 - AluSx SINE Alu -5 307 1 316 238 81 113 chr1 36876002 36876123 -245317541 + MIR SINE MIR 146 262 0 205 333 25 25 chr1 36876834 36876915 -245316749 + MIR SINE MIR 164 244 -18 315 213 0 0 chr1 36877307 36877382 -245316282 + (TG)n Simple_repeat Simple_repeat 1 75 0 185 311 0 49 chr1 36877527 36877588 -245316076 + MIR SINE MIR 40 97 -165 1577 151 12 72 chr1 36877592 36877924 -245315740 - AluJo SINE Alu 0 312 1 415 178 33 0 chr1 36877939 36878029 -245315635 - L1MB4 LINE L1 -2 6178 6086 1889 162 0 19 chr1 36878089 36878403 -245315261 - AluJb SINE Alu -4 308 1 387 215 51 0 chr1 36878411 36878490 -245315174 + MIR SINE MIR 110 192 -70 228 246 0 0 chr1 36878805 36878862 -245314802 - L1MC4 LINE L1 -1334 6708 6652 225 234 0 43 chr1 36878868 36878962 -245314702 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr1 36878962 36878985 -245314679 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 1831 106 31 38 chr1 36878985 36879277 -245314387 - AluSx SINE Alu -22 290 1 275 217 0 33 chr1 36879445 36879505 -245314159 + MIR3 SINE MIR 122 179 -29 583 277 71 34 chr1 36879523 36879761 -245313903 + MIR SINE MIR 1 247 -15 810 252 52 5 chr1 36880657 36880867 -245312797 + MIR SINE MIR 37 256 -6 543 221 0 0 chr1 36880960 36881087 -245312577 + (CA)n Simple_repeat Simple_repeat 2 128 0 387 287 66 30 chr1 36881225 36881392 -245312272 - MIR SINE MIR -10 252 80 279 306 0 0 chr1 36881435 36881520 -245312144 - L2 LINE L2 -203 3069 2985 1022 185 25 30 chr1 36881526 36881726 -245311938 + MER20 DNA MER1_type 7 205 -14 523 302 167 0 chr1 36881742 36881957 -245311707 - MIR SINE MIR -4 258 8 241 248 137 46 chr1 36882012 36882165 -245311499 + MIR3 SINE MIR 35 201 -7 491 266 38 43 chr1 36882916 36883100 -245310564 + MIR3 SINE MIR 21 203 -5 394 221 13 0 chr1 36883390 36883467 -245310197 - L3 LINE CR1 -97 1480 1403 247 364 18 0 chr1 36883547 36883657 -245310007 - L2 LINE L2 -1 3271 3160 479 276 0 32 chr1 36883730 36883886 -245309778 + MER103 DNA DNA 3 153 -13 216 0 0 0 chr1 36883922 36883946 -245309718 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 247 240 67 0 chr1 36883952 36884027 -245309637 - L2 LINE L2 -214 3058 2979 294 206 22 98 chr1 36884751 36884935 -245308729 + (CCCCG)n Simple_repeat Simple_repeat 5 174 0 279 0 0 0 chr1 36886529 36886560 -245307104 + (TG)n Simple_repeat Simple_repeat 2 32 0 234 313 0 23 chr1 36886626 36886757 -245306907 - L2 LINE L2 -290 2982 2855 426 305 35 40 chr1 36887317 36887491 -245306173 + MLT1L LTR MaLR 1 173 -442 335 243 14 0 chr1 36887484 36887558 -245306106 + MLT1L LTR MaLR 124 198 -417 * 264 223 286 55 chr1 36887649 36887887 -245305777 + MLT1L LTR MaLR 296 615 0 191 273 182 16 chr1 36888005 36888126 -245305538 - L2 LINE L2 -1 3312 3172 289 297 30 10 chr1 36888151 36888252 -245305412 - MIR SINE MIR -48 214 112 487 317 164 26 chr1 36888261 36888683 -245304981 + MLT1J2 LTR MaLR 1 495 -16 2111 126 0 0 chr1 36888705 36889007 -245304657 - AluSx SINE Alu -10 302 1 2213 107 0 0 chr1 36889149 36889448 -245304216 - AluSx SINE Alu -13 299 1 2944 194 14 36 chr1 36889945 36890451 -245303213 - MER82 DNA MER2_type -1 652 158 2014 117 7 3 chr1 36890451 36890753 -245302911 + AluSq SINE Alu 1 303 0 2944 194 14 36 chr1 36890753 36890832 -245302832 - MER82 DNA MER2_type -495 158 79 463 243 44 44 chr1 36890976 36891157 -245302507 - MIR SINE MIR -17 245 65 329 312 127 41 chr1 36891845 36892137 -245301527 + L1M2 LINE L1 793 1109 -5740 1404 238 103 51 chr1 36892466 36892933 -245300731 - LTR16C LTR ERVL 0 491 1 213 276 17 0 chr1 36893030 36893088 -245300576 + GA-rich Low_complexity Low_complexity 3 61 0 842 307 30 23 chr1 36893190 36893493 -245300171 - ERVL LTR ERVL -711 5053 4749 2173 93 11 0 chr1 36893537 36893840 -245299824 + AluSg SINE Alu 1 306 0 188 151 0 151 chr1 36893947 36894000 -245299664 - L2 LINE L2 -2099 1215 1171 2274 308 44 18 chr1 36894142 36895089 -245298575 - ERVL LTR ERVL -1336 4318 3347 319 228 13 13 chr1 36895121 36895200 -245298464 + LTR50 LTR ERVL 3 81 -714 432 55 0 0 chr1 36895218 36895273 -245298391 + (TA)n Simple_repeat Simple_repeat 1 55 0 226 200 71 0 chr1 36895273 36895343 -245298321 - L1MCa LINE L1 -4362 2064 1990 1171 347 14 6 chr1 36895361 36896118 -245297546 - ERVL LTR ERVL -3420 1576 1251 1157 224 174 3 chr1 36896252 36896850 -245296814 + LTR50 LTR ERVL 3 787 -8 2121 122 14 0 chr1 36897079 36897374 -245296290 - AluSx SINE Alu 0 312 14 377 298 28 79 chr1 36897388 36897603 -245296061 - ERVL LTR ERVL -4163 833 630 421 291 85 40 chr1 36898089 36898288 -245295376 - LTR16C LTR ERVL -96 395 188 301 244 146 0 chr1 36898413 36898495 -245295169 + L1MD2 LINE L1 6256 6349 -10 234 0 0 0 chr1 36898562 36898588 -245295076 + (CA)n Simple_repeat Simple_repeat 1 26 0 207 100 0 0 chr1 36898587 36898617 -245295047 + (TA)n Simple_repeat Simple_repeat 2 31 0 * 342 366 69 28 chr1 36898891 36899107 -245294557 + L1MEd LINE L1 535 759 -5360 442 321 101 52 chr1 36899132 36899537 -245294127 - LTR16A LTR ERVL -8 442 18 442 222 135 52 chr1 36899577 36899807 -245293857 + L1MEd LINE L1 817 1065 -5054 493 234 89 132 chr1 36899812 36899836 -245293828 + MIR SINE MIR 1 24 -238 1976 137 17 7 chr1 36899836 36900136 -245293528 + AluJb SINE Alu 1 303 -9 493 234 89 132 chr1 36900136 36900368 -245293296 + MIR SINE MIR 24 246 -16 471 304 82 16 chr1 36900370 36900886 -245292778 + L1MEd LINE L1 1052 1655 -857 292 227 13 40 chr1 36900906 36900981 -245292683 + L1ME1 LINE L1 44 116 -6280 7061 117 22 13 chr1 36900999 36901680 -245291984 - Tigger3b DNA MER2_type -1811 1217 520 2225 109 0 0 chr1 36901680 36902012 -245291652 + AluSx SINE Alu 1 332 0 7061 117 22 13 chr1 36902012 36902418 -245291246 - Tigger3b DNA MER2_type -2508 520 119 2362 184 35 78 chr1 36902418 36902995 -245290669 + MLT2B3 LTR ERVL 3 554 0 760 140 18 0 chr1 36902995 36903109 -245290555 - Tigger3b DNA MER2_type -1114 117 2 2728 226 90 9 chr1 36903109 36903807 -245289857 + L1ME1 LINE L1 114 868 -5528 647 158 62 89 chr1 36903808 36903954 -245289710 + FLAM_C SINE Alu 2 143 0 1917 168 0 13 chr1 36903966 36904269 -245289395 + AluJb SINE Alu 1 299 -13 5471 220 77 64 chr1 36904277 36905318 -245288346 + L1ME1 LINE L1 867 1893 -4322 2076 108 18 0 chr1 36905318 36905639 -245288025 + AluSq SINE Alu 1 326 0 5471 220 77 64 chr1 36905639 36905800 -245287864 + L1ME1 LINE L1 1893 2050 -4165 782 168 0 51 chr1 36905800 36905937 -245287727 + FRAM SINE Alu 39 168 -8 5471 220 77 64 chr1 36905937 36906345 -245287319 + L1ME1 LINE L1 2050 2451 -3764 2275 135 68 14 chr1 36906345 36906715 -245286949 + MLT1B LTR MaLR 1 390 0 5471 220 77 64 chr1 36906715 36907897 -245285767 + L1ME1 LINE L1 2451 3851 -2364 2361 64 10 7 chr1 36907897 36908192 -245285472 + AluY SINE Alu 1 296 -15 5471 220 77 64 chr1 36908192 36908420 -245285244 + L1ME1 LINE L1 3851 4075 -2140 5359 168 23 25 chr1 36908440 36910226 -245283438 - L1MA9 LINE L1 -38 6274 4480 3642 194 103 106 chr1 36910213 36910784 -245282880 + L1ME1 LINE L1 4053 4624 -1717 * 1843 172 0 3 chr1 36910784 36911081 -245282583 + AluJo SINE Alu 1 296 -16 3642 194 103 106 chr1 36911081 36911214 -245282450 + L1ME1 LINE L1 4624 4756 -1585 2140 134 0 7 chr1 36911214 36911521 -245282143 + AluSx SINE Alu 1 305 -7 3642 194 103 106 chr1 36911521 36912035 -245281629 + L1ME1 LINE L1 4756 5271 -1070 1075 220 0 0 chr1 36912035 36912208 -245281456 + FAM SINE Alu 1 173 -2 3642 194 103 106 chr1 36912208 36912535 -245281129 + L1ME1 LINE L1 5271 5598 -743 29422 64 9 5 chr1 36912546 36916519 -245277145 - L1PA6 LINE L1 -13 6141 2149 2322 101 0 0 chr1 36916519 36916815 -245276849 - AluY SINE Alu -15 296 1 29422 64 9 5 chr1 36916815 36917477 -245276187 - L1PA6 LINE L1 -4005 2149 1491 1587 203 36 43 chr1 36917480 36917518 -245276146 + L1ME1 LINE L1 5589 5626 -609 2463 147 52 7 chr1 36917518 36917926 -245275738 + MSTA LTR MaLR 1 426 -2 1587 203 36 43 chr1 36917926 36918017 -245275647 + L1ME1 LINE L1 5626 5716 -519 2660 135 45 43 chr1 36918017 36918440 -245275224 - MSTB LTR MaLR 0 426 3 1587 203 36 43 chr1 36918440 36918728 -245274936 + L1ME1 LINE L1 5716 6004 -231 764 184 116 0 chr1 36918728 36918875 -245274789 - AluSg/x SINE Alu -12 298 135 456 254 0 37 chr1 36918880 36919014 -245274650 + L1MA10 LINE L1 6206 6334 0 2271 86 0 0 chr1 36919147 36919490 -245274174 + AluSc SINE Alu 1 343 0 213 219 0 41 chr1 36919606 36919679 -245273985 + A-rich Low_complexity Low_complexity 3 72 0 6454 147 7 14 chr1 36919775 36921219 -245272445 + L1MA3 LINE L1 4838 6272 -33 27 29 0 0 chr1 36921240 36921274 -245272390 + AT_rich Low_complexity Low_complexity 1 34 0 235 372 0 0 chr1 36921796 36921874 -245271790 - L2 LINE L2 -5 3267 3190 2421 89 0 13 chr1 36921901 36922215 -245271449 + AluSg SINE Alu 1 310 0 181 289 66 90 chr1 36922224 36922435 -245271229 - L2 LINE L2 -211 3061 2856 355 241 45 18 chr1 36922838 36922950 -245270714 + MIR3 SINE MIR 6 120 -88 340 274 20 20 chr1 36923213 36923359 -245270305 - HAL1b LINE L1 -2 1346 1201 186 71 0 0 chr1 36923361 36923389 -245270275 + (CA)n Simple_repeat Simple_repeat 1 28 0 807 276 132 29 chr1 36923644 36923740 -245269924 - L1ME LINE L1 -404 5717 5632 1641 167 50 14 chr1 36923740 36924021 -245269643 + AluJb SINE Alu 1 291 -21 807 276 132 29 chr1 36924021 36924340 -245269324 - L1ME LINE L1 -489 5632 5259 480 35 0 0 chr1 36924509 36924567 -245269097 + (CA)n Simple_repeat Simple_repeat 2 59 0 408 287 67 24 chr1 36924691 36924855 -245268809 + MIR SINE MIR 20 190 -72 409 280 91 38 chr1 36925880 36926066 -245267598 - MIR SINE MIR -3 259 64 274 206 64 53 chr1 36926184 36926313 -245267351 + MIR SINE MIR 19 137 -71 480 294 49 6 chr1 36927092 36927255 -245266409 - MIR SINE MIR -33 229 60 207 254 18 0 chr1 36927520 36927575 -245266089 + GA-rich Low_complexity Low_complexity 3 58 0 277 113 245 0 chr1 36927676 36927729 -245265935 + MLT1K LTR MaLR 507 572 -16 1041 283 148 30 chr1 36927769 36928376 -245265288 + L2 LINE L2 2348 3064 -249 2273 109 70 56 chr1 36928376 36928546 -245265118 + THE1B LTR MaLR 1 167 -197 2378 104 0 0 chr1 36928546 36928854 -245264810 + AluSc SINE Alu 1 308 -1 2273 109 70 56 chr1 36928854 36929042 -245264622 + THE1B LTR MaLR 167 364 0 1041 283 148 30 chr1 36929042 36929128 -245264536 + L2 LINE L2 3064 3138 -175 2303 117 0 0 chr1 36929186 36929493 -245264171 + AluSq SINE Alu 1 307 -6 576 260 141 38 chr1 36929583 36929999 -245263665 + L1ME LINE L1 609 1073 -5046 817 239 118 44 chr1 36930172 36930608 -245263056 + L1ME LINE L1 1018 1494 -4635 839 312 27 37 chr1 36930608 36930983 -245262681 + L2 LINE L2 2834 3204 -109 27 29 0 0 chr1 36930997 36931031 -245262633 + AT_rich Low_complexity Low_complexity 1 34 0 502 244 32 0 chr1 36931217 36931340 -245262324 - MLT1L LTR MaLR 0 615 489 667 267 89 25 chr1 36931438 36931719 -245261945 - MLT1L LTR MaLR -299 316 18 209 277 188 9 chr1 36931778 36931890 -245261774 - MIR SINE MIR -68 194 63 2901 138 9 64 chr1 36931951 36932158 -245261506 + L1MB7 LINE L1 5670 5887 -297 2240 115 0 0 chr1 36932158 36932462 -245261202 + AluSx SINE Alu 1 304 -8 2901 138 9 64 chr1 36932462 36932789 -245260875 + L1MB7 LINE L1 5887 6175 -9 1933 209 136 6 chr1 36932794 36933296 -245260368 + MLT1G LTR MaLR 14 580 -10 310 296 21 37 chr1 36933651 36933840 -245259824 + L2 LINE L2 2251 2436 -878 2251 271 116 20 chr1 36933840 36934921 -245258743 + L2 LINE L2 2128 3313 0 2202 110 3 3 chr1 36934981 36935280 -245258384 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 36935443 36935465 -245258199 + AT_rich Low_complexity Low_complexity 1 22 0 346 244 79 24 chr1 36935469 36935596 -245258068 - L1ME4a LINE L1 -13 6108 5975 491 241 9 0 chr1 36935715 36935823 -245257841 + MIR SINE MIR 81 189 -73 289 303 22 0 chr1 36935873 36935962 -245257702 - MIR SINE MIR -15 247 157 623 276 81 24 chr1 36936625 36936871 -245256793 - MIR SINE MIR 0 262 3 305 326 34 39 chr1 36936928 36937106 -245256558 - MIR SINE MIR -65 197 21 334 252 168 17 chr1 36937208 36937327 -245256337 + L2 LINE L2 3175 3311 -2 797 278 72 32 chr1 36937547 36937846 -245255818 + MLT1L LTR MaLR 2 288 -327 2062 93 31 17 chr1 36937846 36938136 -245255528 - AluSx SINE Alu -18 294 1 797 278 72 32 chr1 36938136 36938393 -245255271 + MLT1L LTR MaLR 288 615 0 323 286 40 39 chr1 36938506 36938702 -245254962 - MIR SINE MIR -61 201 4 218 386 38 19 chr1 36938797 36938955 -245254709 + L2 LINE L2 2946 3106 -166 2335 101 0 0 chr1 36938982 36939279 -245254385 - AluSx SINE Alu -15 297 1 716 295 43 20 chr1 36939359 36939613 -245254051 + MIR SINE MIR 3 262 0 197 200 0 0 chr1 36939649 36939684 -245253980 + L2 LINE L2 3238 3272 0 412 240 188 6 chr1 36939760 36939924 -245253740 + MIR SINE MIR 38 244 -18 407 294 33 38 chr1 36940213 36940397 -245253267 + MIR3 SINE MIR 16 198 -10 248 348 25 9 chr1 36940928 36941084 -245252580 - MIR SINE MIR -62 146 26 1897 138 13 10 chr1 36941086 36941437 -245252227 - MER31A LTR ERV1 0 485 1 302 259 12 0 chr1 36941466 36941547 -245252117 - MLT1K LTR MaLR -2 586 505 433 297 23 40 chr1 36941579 36941754 -245251910 + MIR SINE MIR 29 200 -62 330 210 145 91 chr1 36941755 36941836 -245251828 + MER112 DNA MER1_type 21 96 -164 1387 145 86 48 chr1 36941836 36942126 -245251538 + AluJo SINE Alu 1 301 -11 222 37 0 0 chr1 36942126 36942153 -245251511 + (TA)n Simple_repeat Simple_repeat 2 28 0 330 210 145 91 chr1 36942153 36942211 -245251453 + MER112 DNA MER1_type 96 149 -111 189 74 0 0 chr1 36942211 36942238 -245251426 + (CTAGT)n Simple_repeat Simple_repeat 2 28 0 330 210 145 91 chr1 36942238 36942282 -245251382 + MER112 DNA MER1_type 149 216 -44 559 156 12 192 chr1 36942282 36942374 -245251290 + L1MA7 LINE L1 6155 6214 -86 1973 115 39 0 chr1 36942374 36942653 -245251011 + AluSx SINE Alu 1 290 -22 559 156 12 192 chr1 36942653 36942727 -245250937 + L1MA7 LINE L1 6214 6300 0 227 337 22 0 chr1 36942795 36942887 -245250777 + MIR SINE MIR 169 262 0 309 300 33 0 chr1 36943133 36943223 -245250441 - MIR SINE MIR 0 262 170 687 187 45 0 chr1 36943237 36943371 -245250293 + MLT1J2 LTR MaLR 3 142 -308 362 153 8 169 chr1 36943492 36943610 -245250054 + MER58B DNA MER1_type 231 329 -12 1973 99 3 11 chr1 36943612 36943985 -245249679 + AluSg SINE Alu 1 371 0 397 215 8 115 chr1 36944029 36944159 -245249505 - MLT1K LTR MaLR -350 238 123 1917 141 40 85 chr1 36944180 36944578 -245249086 + MLT1B LTR MaLR 1 380 -10 1995 133 23 17 chr1 36945016 36945361 -245248303 - THE1C LTR MaLR 0 375 29 930 67 42 0 chr1 36945472 36945749 -245247915 + L1PA11 LINE L1 6042 6323 0 226 330 64 0 chr1 36945876 36945985 -245247679 - L2 LINE L2 -335 2978 2863 744 292 116 26 chr1 36946110 36946643 -245247021 + L2 LINE L2 2446 3059 -213 760 239 46 87 chr1 36946757 36946911 -245246753 + MLT1I LTR MaLR 63 222 -187 2099 82 10 10 chr1 36946911 36947235 -245246429 + AluSp SINE Alu 1 313 0 760 239 46 87 chr1 36947235 36947446 -245246218 + MLT1I LTR MaLR 222 391 -18 290 271 65 28 chr1 36947456 36947563 -245246101 + L2 LINE L2 3202 3312 -1 429 269 44 94 chr1 36947824 36948121 -245245543 - L2 LINE L2 -159 3113 2832 495 219 33 66 chr1 36948186 36948337 -245245327 - L2 LINE L2 -210 3062 2917 186 103 0 0 chr1 36948559 36948588 -245245076 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2765 172 93 38 chr1 36948727 36948970 -245244694 - L1MC3 LINE L1 -8 7777 7549 1998 107 21 0 chr1 36948970 36949259 -245244405 - AluSq SINE Alu -18 295 1 2765 172 93 38 chr1 36949259 36949679 -245243985 - L1MC3 LINE L1 -236 7549 7077 289 190 63 0 chr1 36950301 36950380 -245243284 - L1MA7 LINE L1 -1 6290 6207 192 343 221 15 chr1 36950402 36950863 -245242801 + L2 LINE L2 1939 2494 -820 665 160 0 0 chr1 36950945 36951051 -245242613 + FLAM_C SINE Alu 2 107 -36 255 61 0 0 chr1 36951235 36951268 -245242396 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2023 112 3 3 chr1 36951309 36951603 -245242061 - AluSq SINE Alu -15 298 5 1337 241 82 66 chr1 36951986 36952563 -245241101 - MER97b DNA MER1_type? -466 587 2 826 227 106 5 chr1 36952566 36952773 -245240891 - L1MC4a LINE L1 -454 7354 7127 * 1132 160 55 5 chr1 36952763 36952982 -245240682 - L1MC4 LINE L1 -871 7171 6942 213 39 0 0 chr1 36953110 36953136 -245240528 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 248 257 229 12 chr1 36953202 36953352 -245240312 + MIR SINE MIR 11 192 -70 311 291 150 56 chr1 36953802 36954189 -245239475 + L2 LINE L2 2787 3208 -105 314 158 18 35 chr1 36954684 36954741 -245238923 + MER117 DNA MER1_type 95 150 -47 303 236 9 0 chr1 36954959 36955031 -245238633 + MIR SINE MIR 85 145 -63 196 286 0 18 chr1 36955188 36955244 -245238420 - L2 LINE L2 -13 3259 3205 186 319 0 0 chr1 36955268 36955315 -245238349 + L2 LINE L2 3210 3256 -16 291 287 37 61 chr1 36955806 36955973 -245237691 + MIR SINE MIR 45 205 -57 228 293 0 0 chr1 36956306 36956364 -245237300 - MLT1K LTR MaLR -340 248 191 768 227 137 82 chr1 36957152 36957396 -245236268 - MLT1D LTR MaLR 0 505 276 1794 164 0 7 chr1 36957396 36957683 -245235981 - AluJo SINE Alu -27 285 1 768 227 137 82 chr1 36957683 36957902 -245235762 - MLT1D LTR MaLR -229 276 6 211 163 113 88 chr1 36958059 36958139 -245235525 + MIR SINE MIR 110 191 -71 501 233 58 8 chr1 36958563 36958683 -245234981 - MIR SINE MIR -74 188 63 506 188 42 0 chr1 36958848 36958944 -245234720 + L2 LINE L2 3214 3313 0 268 256 88 36 chr1 36959372 36959426 -245234238 - L1ME4a LINE L1 -1 6120 6070 2200 66 3 53 chr1 36959426 36959744 -245233920 + AluY SINE Alu 1 302 -9 268 256 88 36 chr1 36959744 36959826 -245233838 - L1ME4a LINE L1 -51 6070 5977 1726 105 0 95 chr1 36959852 36960167 -245233497 + AluSx SINE Alu 1 285 -27 503 0 32 0 chr1 36960167 36960229 -245233435 + (CATAA)n Simple_repeat Simple_repeat 2 65 0 1308 118 11 0 chr1 36960460 36960646 -245233018 - AluSp SINE Alu -125 188 1 2269 97 0 0 chr1 36960656 36960956 -245232708 - AluY SINE Alu -11 300 1 847 307 30 23 chr1 36961000 36961303 -245232361 + ERVL LTR ERVL 4749 5053 -711 213 276 17 0 chr1 36961405 36961463 -245232201 + CT-rich Low_complexity Low_complexity 3 61 0 1259 236 103 51 chr1 36961560 36962027 -245231637 + LTR16C LTR ERVL 1 491 0 2222 95 3 3 chr1 36962080 36962386 -245231278 - AluSx SINE Alu -6 306 1 2742 172 14 22 chr1 36962386 36962892 -245230772 + MER82 DNA MER2_type 151 652 -1 2192 104 0 0 chr1 36963388 36963685 -245229979 + AluSx SINE Alu 1 297 -15 2087 126 0 0 chr1 36963829 36964131 -245229533 + AluSx SINE Alu 1 302 -10 421 213 170 7 chr1 36964160 36964301 -245229363 - MLT1J2 LTR MaLR -22 428 265 1027 261 38 10 chr1 36964453 36964744 -245228920 - L1ME LINE L1 -497 5667 5369 2333 275 105 19 chr1 36964786 36966212 -245227452 + L2 LINE L2 1756 3309 -4 218 291 173 27 chr1 36966230 36966340 -245227324 + L2 LINE L2 3143 3268 -4 2167 108 0 0 chr1 36966341 36966638 -245227026 - AluSx SINE Alu -15 297 1 365 225 93 70 chr1 36967009 36967138 -245226526 - L1ME4a LINE L1 -23 6098 5967 204 40 0 0 chr1 36967150 36967175 -245226489 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 1287 181 68 19 chr1 36967178 36967444 -245226220 - AluJb SINE Alu -33 279 1 2017 131 64 22 chr1 36967841 36968201 -245225463 - THE1C LTR MaLR 0 375 1 1113 163 45 24 chr1 36968484 36968730 -245224934 + L1 LINE L1 3242 3492 -2654 342 293 9 9 chr1 36968730 36968836 -245224828 - MIR SINE MIR -127 135 30 366 283 143 26 chr1 36969593 36969823 -245223841 - L2 LINE L2 -457 2857 2601 218 333 0 67 chr1 36969803 36969938 -245223726 + MIR SINE MIR 80 205 -57 * 204 250 104 0 chr1 36970037 36970085 -245223579 - MIR SINE MIR -145 117 65 215 276 40 0 chr1 36970417 36970493 -245223171 - L2 LINE L2 -601 2713 2635 658 291 62 26 chr1 36970719 36970946 -245222718 + MIR SINE MIR 22 256 -6 976 148 153 60 chr1 36972329 36972382 -245221282 - L1MB7 LINE L1 -20 6164 6117 2050 95 6 50 chr1 36972382 36972699 -245220965 + AluSx SINE Alu 3 305 -7 976 148 153 60 chr1 36972699 36972861 -245220803 - L1MB7 LINE L1 -67 6117 5929 1075 242 249 31 chr1 36973973 36974548 -245219116 + L2 LINE L2 2631 3313 0 403 221 14 107 chr1 36974581 36974682 -245218982 + MIR SINE MIR 103 189 -73 2107 118 0 13 chr1 36974682 36974816 -245218848 + AluSg SINE Alu 1 135 -175 1903 131 13 3 chr1 36974816 36975114 -245218550 + AluSg SINE Alu 1 301 -9 2107 118 0 13 chr1 36975114 36975292 -245218372 + AluSg SINE Alu 135 309 -1 403 221 14 107 chr1 36975292 36975330 -245218334 + MIR SINE MIR 189 229 -33 525 31 0 0 chr1 36975621 36975686 -245217978 - L1PA5 LINE L1 -3 6151 6087 234 91 0 0 chr1 37075910 37075943 -245117721 + (A)n Simple_repeat Simple_repeat 1 33 0 643 259 6 17 chr1 37076841 37077015 -245116649 + L3 LINE CR1 1315 1486 -91 561 275 53 6 chr1 37077549 37077720 -245115944 - MER58C DNA MER1_type -15 200 22 181 265 0 0 chr1 37077920 37077954 -245115710 + MER5A DNA MER1_type 49 82 -107 500 122 33 44 chr1 37077955 37078045 -245115619 - MER5A DNA MER1_type 0 189 101 228 100 0 0 chr1 37078052 37078082 -245115582 - Charlie1 DNA MER1_type -2731 30 1 279 173 0 0 chr1 37079006 37079058 -245114606 + (CA)n Simple_repeat Simple_repeat 1 52 0 358 268 134 0 chr1 37080994 37081091 -245112573 - MIR SINE MIR -62 146 37 280 252 13 113 chr1 37081280 37081409 -245112255 + MER5B DNA MER1_type 1 113 -65 1651 151 35 51 chr1 37081409 37081720 -245111944 - AluJo SINE Alu -6 306 1 280 252 13 113 chr1 37081720 37081749 -245111915 + MER5B DNA MER1_type 113 143 -35 2403 191 124 22 chr1 37081749 37082295 -245111369 + L1ME2 LINE L1 5553 6154 -10 261 0 0 0 chr1 37082300 37082329 -245111335 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 449 229 26 88 chr1 37082348 37082575 -245111089 + L1MC4 LINE L1 7829 8041 -1 756 255 48 5 chr1 37083817 37084025 -245109639 + MIR SINE MIR 12 228 -34 411 211 202 9 chr1 37084183 37084297 -245109367 + MER5A DNA MER1_type 47 182 -7 243 247 151 0 chr1 37084334 37084439 -245109225 - MIR SINE MIR -77 131 29 24 53 0 0 chr1 37084827 37084865 -245108799 + AT_rich Low_complexity Low_complexity 1 38 0 388 210 50 0 chr1 37085300 37085400 -245108264 + L1ME4a LINE L1 5974 6078 -43 290 358 72 24 chr1 37085965 37086172 -245107492 + MIR SINE MIR 46 262 0 995 278 109 33 chr1 37086796 37087246 -245106418 + L1MC4a LINE L1 5273 5756 -2052 984 255 29 0 chr1 37087293 37087536 -245106128 - MIR SINE MIR -2 260 11 278 298 15 38 chr1 37087614 37087745 -245105919 + L1MC4a LINE L1 5810 5937 -1871 198 0 0 0 chr1 37087790 37087812 -245105852 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2417 76 0 0 chr1 37087895 37088186 -245105478 + AluY SINE Alu 1 291 -20 327 231 185 0 chr1 37088191 37088321 -245105343 + L1ME3A LINE L1 4628 4781 -1365 733 189 0 63 chr1 37088362 37088521 -245105143 - MER63 DNA MER1_type -276 786 12 1914 265 98 23 chr1 37088522 37089600 -245104064 + L1ME3A LINE L1 4800 5951 -219 1978 70 60 46 chr1 37089686 37089971 -245103693 - AluY SINE Alu -22 289 1 2479 77 0 0 chr1 37089974 37090274 -245103390 - AluSc SINE Alu -8 301 2 1168 309 109 8 chr1 37090535 37091065 -245102599 + L2 LINE L2 1848 2431 -883 345 240 322 13 chr1 37091502 37091735 -245101929 - L2 LINE L2 -5 3308 3004 1414 252 81 28 chr1 37091922 37092035 -245101629 - L1MEd LINE L1 -2807 3322 3216 2206 128 0 7 chr1 37092035 37092340 -245101324 - AluSx SINE Alu -8 304 2 1414 252 81 28 chr1 37092340 37093221 -245100443 - L1MEd LINE L1 -2913 3216 2233 437 214 0 22 chr1 37093314 37093403 -245100261 - MER20 DNA MER1_type -132 87 1 523 205 18 0 chr1 37093405 37093517 -245100147 - L1MEd LINE L1 -3893 2236 2123 1030 279 69 73 chr1 37093626 37094368 -245099296 - L1MEd LINE L1 -4875 1244 506 2303 98 0 19 chr1 37095299 37095615 -245098049 - AluSg SINE Alu 0 310 1 281 290 180 25 chr1 37095933 37096178 -245097486 + L1ME4a LINE L1 5523 5805 -316 341 286 87 0 chr1 37096262 37096423 -245097241 + L1ME4a LINE L1 5944 6118 -3 207 0 0 0 chr1 37098301 37098324 -245095340 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1650 198 74 37 chr1 37098337 37098410 -245095254 + L1M4 LINE L1 3828 3897 -2249 2143 103 3 7 chr1 37098410 37098710 -245094954 - AluSc SINE Alu -10 299 1 1650 198 74 37 chr1 37098710 37099095 -245094569 + L1M4 LINE L1 3897 4303 -1843 405 236 64 36 chr1 37099099 37099209 -245094455 - MIR SINE MIR -145 117 5 2226 99 0 3 chr1 37099794 37100117 -245093547 - AluSx SINE Alu 0 322 1 378 0 0 0 chr1 37101028 37101070 -245092594 + (CA)n Simple_repeat Simple_repeat 1 42 0 6589 247 68 20 chr1 37101714 37103136 -245090528 + L1MEc LINE L1 12 1365 -4850 2492 69 0 28 chr1 37103136 37103454 -245090210 + AluY SINE Alu 1 309 -2 6589 247 68 20 chr1 37103454 37105657 -245088007 + L1MEc LINE L1 1365 3771 -2444 898 222 75 48 chr1 37105790 37106042 -245087622 + MIR SINE MIR 4 262 0 1621 206 59 73 chr1 37106137 37106463 -245087201 - MLT1D LTR MaLR -4 501 183 2664 30 0 0 chr1 37106463 37106759 -245086905 - AluY SINE Alu -15 296 1 1621 206 59 73 chr1 37106759 37106938 -245086726 - MLT1D LTR MaLR -322 183 3 499 293 59 70 chr1 37107373 37107468 -245086196 + MIR SINE MIR 10 105 -157 1688 182 52 3 chr1 37107468 37107759 -245085905 - AluJo SINE Alu -5 307 3 499 293 59 70 chr1 37107759 37107919 -245085745 + MIR SINE MIR 105 262 0 200 372 92 19 chr1 37108691 37108898 -245084766 + L2 LINE L2 2638 2859 -455 254 315 183 19 chr1 37109020 37109233 -245084431 + L2 LINE L2 3025 3272 0 453 312 40 25 chr1 37109796 37109995 -245083669 - MIR SINE MIR -49 213 12 2148 107 7 7 chr1 37110668 37110978 -245082686 + AluSg SINE Alu 1 310 0 21 36 0 0 chr1 37111508 37111536 -245082128 + AT_rich Low_complexity Low_complexity 1 28 0 295 287 139 0 chr1 37111825 37111926 -245081738 - L2 LINE L2 0 3313 3199 251 315 45 0 chr1 37112269 37112358 -245081306 - L2 LINE L2 -6 3266 3174 389 132 66 66 chr1 37112493 37112569 -245081095 + MLT1F1 LTR MaLR 430 567 0 1122 185 6 6 chr1 37113702 37113880 -245079784 - MER45A DNA AcHobo 0 178 1 619 215 153 57 chr1 37113889 37114117 -245079547 + MIR SINE MIR 1 250 -12 456 308 73 65 chr1 37114267 37114621 -245079043 + L2 LINE L2 1708 2064 -1250 239 314 58 16 chr1 37114734 37114855 -245078809 + L2 LINE L2 2092 2217 -1097 346 240 306 0 chr1 37114922 37115043 -245078621 - MIR SINE MIR -54 208 51 520 298 60 82 chr1 37116257 37116573 -245077091 + L2 LINE L2 2937 3245 -27 336 279 75 91 chr1 37117491 37117931 -245075733 + L1M2 LINE L1 836 1268 -5581 339 265 238 22 chr1 37118219 37118404 -245075260 - MIR SINE MIR -6 256 32 326 297 8 39 chr1 37118525 37118653 -245075011 - MIR SINE MIR -79 183 60 * 534 271 70 51 chr1 37118627 37118841 -245074823 - MIR SINE MIR -10 252 35 2275 102 3 0 chr1 37119094 37119398 -245074266 - AluSq SINE Alu -8 305 1 1463 181 99 14 chr1 37119510 37119792 -245073872 - AluJo SINE Alu -6 306 1 775 198 128 12 chr1 37119964 37120136 -245073528 + MIR SINE MIR 12 203 -59 21 0 0 0 chr1 37120182 37120203 -245073461 + AT_rich Low_complexity Low_complexity 1 21 0 261 57 0 0 chr1 37120827 37120862 -245072802 + (TG)n Simple_repeat Simple_repeat 1 35 0 881 264 43 4 chr1 37120937 37121168 -245072496 + MIR SINE MIR 2 241 -21 496 240 72 8 chr1 37121330 37121497 -245072167 + MIR SINE MIR 15 197 -63 407 258 81 28 chr1 37121610 37121808 -245071856 - MIR SINE MIR -3 259 5 231 182 23 0 chr1 37121918 37121962 -245071702 + L2 LINE L2 3268 3312 -1 238 325 26 0 chr1 37121978 37122055 -245071609 - L3b LINE CR1 -227 1356 1278 2309 183 36 9 chr1 37122279 37122726 -245070938 - MLT1C LTR MaLR -8 459 1 314 228 25 13 chr1 37123019 37123098 -245070566 - MIR SINE MIR -76 132 53 245 221 106 62 chr1 37123421 37123534 -245070130 + L2 LINE L2 3195 3312 -1 451 261 0 0 chr1 37124214 37124302 -245069362 - MER5A DNA MER1_type -21 168 81 620 251 139 9 chr1 37124328 37124551 -245069113 + MIR SINE MIR 11 262 0 1879 164 3 3 chr1 37124701 37125006 -245068658 - AluJb SINE Alu -7 305 1 196 0 56 56 chr1 37126695 37126731 -245066933 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 313 231 13 26 chr1 37126733 37126811 -245066853 - L2 LINE L2 -17 3255 3179 232 341 0 22 chr1 37127031 37127122 -245066542 - MIR SINE MIR -154 108 20 2162 121 7 0 chr1 37127240 37127546 -245066118 + AluSx SINE Alu 1 308 -4 628 270 45 60 chr1 37128063 37128263 -245065401 + MER63A DNA MER1_type 8 204 -6 607 168 5 43 chr1 37128280 37128465 -245065199 + CT-rich Low_complexity Low_complexity 3 180 0 592 261 82 49 chr1 37128520 37128866 -245064798 + MLT1J LTR MaLR 46 408 -42 573 128 0 0 chr1 37128866 37128944 -245064720 - MADE1 DNA Mariner -2 78 1 592 261 82 49 chr1 37128944 37128981 -245064683 + MLT1J LTR MaLR 408 442 -8 549 313 73 13 chr1 37129107 37129340 -245064324 - MLT1I LTR MaLR -2 407 161 381 210 49 0 chr1 37129492 37129573 -245064091 - MIR SINE MIR -99 163 79 324 364 45 23 chr1 37129764 37129940 -245063724 + MIR3 SINE MIR 15 194 -14 336 344 33 0 chr1 37130074 37130196 -245063468 - L2 LINE L2 -38 3234 3109 186 302 121 16 chr1 37130311 37130493 -245063171 - L2 LINE L2 -913 2401 2201 592 296 39 10 chr1 37131058 37131261 -245062403 - MIR SINE MIR -31 231 23 568 298 56 20 chr1 37131302 37131500 -245062164 + MIR SINE MIR 32 236 -26 2566 121 25 0 chr1 37131715 37132070 -245061594 + THE1B LTR MaLR 1 364 0 341 176 0 99 chr1 37132413 37132504 -245061160 - MLT1L LTR MaLR -533 82 1 344 244 111 56 chr1 37132681 37132861 -245060803 - MLT1J LTR MaLR -23 488 299 246 224 60 0 chr1 37132874 37132941 -245060723 - MLT1J LTR MaLR -336 175 105 264 336 107 38 chr1 37133120 37133623 -245060041 - L2 LINE L2 -1392 1922 1385 2184 93 21 0 chr1 37133777 37134067 -245059597 - AluSp SINE Alu -17 296 1 1460 261 90 19 chr1 37134380 37134856 -245058808 - LTR33 LTR ERVL 0 521 12 1182 202 5 0 chr1 37135189 37135402 -245058262 + MLT1D LTR MaLR 1 214 -291 383 39 0 0 chr1 37135380 37135431 -245058233 + AluY SINE Alu 252 302 0 * 11099 182 19 8 chr1 37135487 37136941 -245056723 + L1P5 LINE L1 2932 4440 -1711 297 0 0 0 chr1 37136941 37136974 -245056690 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 11099 182 19 8 chr1 37136974 37138261 -245055403 + L1P5 LINE L1 4440 5710 -441 1630 88 18 9 chr1 37138257 37138485 -245055179 - L1PB1 LINE L1 -108 6043 5814 * 949 145 7 0 chr1 37138476 37138628 -245055036 - L1PB1 LINE L1 -627 5524 5372 * 723 84 11 0 chr1 37138628 37138714 -245054950 + L1PB1 LINE L1 6053 6148 -3 7278 106 10 16 chr1 37138774 37139799 -245053865 + L1MA2 LINE L1 5121 6151 -153 2177 116 0 0 chr1 37139799 37140083 -245053581 + AluSx SINE Alu 1 284 -28 1295 128 0 20 chr1 37139912 37140083 -245053581 + AluSg/x SINE Alu 114 287 -25 7278 106 10 16 chr1 37140083 37140269 -245053395 + L1MA2 LINE L1 6151 6304 0 234 0 0 0 chr1 37140083 37140109 -245053555 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1295 128 0 20 chr1 37140269 37140298 -245053366 + AluSg/x SINE Alu 286 312 0 628 188 48 4 chr1 37140308 37140505 -245053159 + MLT1D LTR MaLR 251 505 0 204 175 0 0 chr1 37140529 37140569 -245053095 + L2 LINE L2 3273 3312 -1 1799 174 19 80 chr1 37141158 37141573 -245052091 + MLT1B LTR MaLR 1 390 0 1946 104 0 73 chr1 37141939 37142256 -245051408 + AluSx SINE Alu 11 304 -8 288 0 0 0 chr1 37142748 37142780 -245050884 + (GA)n Simple_repeat Simple_repeat 2 33 0 1107 269 133 11 chr1 37142999 37143467 -245050197 - MLT1G1 LTR MaLR 0 595 3 205 274 48 0 chr1 37143502 37143564 -245050100 - MIR SINE MIR -147 115 51 248 275 29 0 chr1 37143567 37143636 -245050028 + (CATA)n Simple_repeat Simple_repeat 4 74 0 1784 165 0 3 chr1 37143704 37144019 -245049645 - AluJb SINE Alu 0 314 1 1671 233 93 50 chr1 37144080 37144734 -245048930 + L2 LINE L2 2443 3121 -192 2514 58 0 0 chr1 37144734 37145043 -245048621 - AluY SINE Alu -2 309 1 1671 233 93 50 chr1 37145043 37145226 -245048438 + L2 LINE L2 3121 3295 -18 255 133 0 0 chr1 37145604 37145649 -245048015 + (CA)n Simple_repeat Simple_repeat 2 46 0 2072 270 55 50 chr1 37145700 37145956 -245047708 - L2 LINE L2 -339 2975 2722 1885 127 0 31 chr1 37145956 37146297 -245047367 - AluSx SINE Alu 0 332 1 2072 270 55 50 chr1 37146297 37146933 -245046731 - L2 LINE L2 -592 2722 2078 186 271 118 23 chr1 37148380 37148534 -245045130 + MIR SINE MIR 87 262 0 1943 123 3 32 chr1 37148619 37148935 -245044729 + AluSx SINE Alu 1 307 -5 1970 74 11 11 chr1 37148940 37149210 -245044454 + AluY SINE Alu 40 309 -2 197 232 36 0 chr1 37149217 37149273 -245044391 + MIR SINE MIR 204 261 -1 590 274 7 0 chr1 37150024 37150177 -245043487 + MIR3 SINE MIR 48 201 -7 1789 138 33 0 chr1 37150410 37150686 -245042978 + AluJo SINE Alu 1 285 -27 201 74 0 0 chr1 37150686 37150713 -245042951 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 475 188 18 45 chr1 37150973 37151085 -245042579 + LTR67 LTR ERVL 446 554 -3 1664 189 43 37 chr1 37151494 37151613 -245042051 + MSTB LTR MaLR 76 193 -233 1307 88 0 88 chr1 37151613 37151839 -245041825 + L1PA13 LINE L1 5958 6163 0 1664 189 43 37 chr1 37151839 37152068 -245041596 + MSTB LTR MaLR 193 426 0 432 265 88 14 chr1 37152328 37152475 -245041189 - MIR SINE MIR -82 180 23 2288 77 3 0 chr1 37152482 37152781 -245040883 - AluSq SINE Alu -13 300 1 360 138 0 0 chr1 37156096 37156154 -245037510 - AluSp/q SINE Alu -8 295 238 524 289 88 36 chr1 37156478 37156727 -245036937 + L2 LINE L2 2851 3112 -160 237 153 306 24 chr1 37156763 37156848 -245036816 + Charlie7 DNA MER1_type 2 110 -2502 681 245 118 15 chr1 37156857 37157061 -245036603 + MIR SINE MIR 30 254 -8 268 225 0 150 chr1 37157062 37157182 -245036482 + Charlie7 DNA MER1_type 2508 2609 -3 539 277 36 24 chr1 37157730 37157896 -245035768 + MIR SINE MIR 21 188 -74 233 255 0 0 chr1 37158032 37158079 -245035585 - MIR SINE MIR 0 262 216 833 143 0 23 chr1 37158147 37158280 -245035384 - FLAM_C SINE Alu -11 132 3 725 292 15 15 chr1 37158282 37158484 -245035180 - MIR SINE MIR -5 257 56 624 284 39 29 chr1 37158535 37158739 -245034925 - MIR SINE MIR -56 206 1 218 302 0 0 chr1 37158800 37158863 -245034801 - MIR SINE MIR 0 262 200 612 270 100 50 chr1 37158863 37159115 -245034549 - MIR SINE MIR 0 262 6 201 74 0 0 chr1 37160073 37160100 -245033564 + (CCTA)n Simple_repeat Simple_repeat 4 30 0 212 274 98 20 chr1 37160225 37160327 -245033337 + L2 LINE L2 2677 2786 -528 494 349 71 40 chr1 37160430 37160754 -245032910 + L2 LINE L2 2936 3269 -3 644 241 80 27 chr1 37160909 37161096 -245032568 - MER117 DNA MER1_type 0 197 1 394 293 141 37 chr1 37161463 37161654 -245032010 + Charlie8 DNA MER1_type 4 214 -2203 419 293 8 32 chr1 37161829 37161952 -245031712 - MIR3 SINE MIR -87 121 2 303 315 79 45 chr1 37161990 37162168 -245031496 + MIR SINE MIR 5 188 -74 2282 76 0 32 chr1 37162487 37162802 -245030862 - AluSg SINE Alu -5 305 1 233 266 25 38 chr1 37162878 37162957 -245030707 + MIR SINE MIR 171 248 -14 330 341 72 0 chr1 37163350 37163488 -245030176 + L2 LINE L2 3158 3305 -8 306 294 40 135 chr1 37163765 37164061 -245029603 - L2 LINE L2 -20 3252 2985 227 189 0 57 chr1 37164574 37164627 -245029037 - L2 LINE L2 -18 3295 3246 880 281 161 18 chr1 37164937 37165484 -245028180 - L2 LINE L2 -526 2788 2164 394 282 18 9 chr1 37165741 37165851 -245027813 - MIR SINE MIR -1 261 151 1178 250 16 4 chr1 37166649 37166901 -245026763 - MIR SINE MIR -6 256 2 1008 92 0 0 chr1 37167061 37167192 -245026472 + AluJb SINE Alu 1 131 -181 727 265 51 10 chr1 37167361 37167557 -245026107 - MIR SINE MIR -1 261 58 254 88 0 0 chr1 37168168 37168202 -245025462 + MIR3 SINE MIR 126 159 -49 8543 181 30 40 chr1 37168700 37170389 -245023275 - L1MC1 LINE L1 0 6613 4909 783 176 0 22 chr1 37170389 37170525 -245023139 + FLAM_C SINE Alu 1 133 0 8543 181 30 40 chr1 37170525 37171453 -245022211 - L1MC1 LINE L1 -1704 4909 3974 1995 123 0 13 chr1 37171453 37171753 -245021911 - AluSg SINE Alu -14 296 1 8543 181 30 40 chr1 37171753 37172241 -245021423 - L1MC1 LINE L1 -2639 3974 3541 1552 175 10 20 chr1 37172241 37172544 -245021120 - AluJb SINE Alu -10 302 3 8543 181 30 40 chr1 37172544 37172733 -245020931 - L1MC1 LINE L1 -3072 3541 3352 3312 161 54 52 chr1 37172724 37173422 -245020242 - L1MC1 LINE L1 -5722 704 5 * 410 321 31 21 chr1 37173659 37173852 -245019812 - MARNA DNA Mariner -148 438 244 423 258 123 26 chr1 37173852 37174120 -245019544 + L1MC4a LINE L1 5882 6175 -1633 1581 176 3 33 chr1 37174483 37174785 -245018879 - AluJo SINE Alu -19 293 1 3985 154 62 23 chr1 37175250 37176245 -245017419 - L1MB3 LINE L1 -173 6010 4969 26 50 0 0 chr1 37176428 37176468 -245017196 + AT_rich Low_complexity Low_complexity 1 40 0 474 270 185 10 chr1 37177895 37178095 -245015569 + MIR SINE MIR 28 262 0 706 218 48 12 chr1 37178453 37178618 -245015046 - MIR SINE MIR 0 262 92 230 200 120 0 chr1 37179336 37179386 -245014278 - MIR SINE MIR -88 174 119 197 279 50 90 chr1 37179613 37179835 -245013829 - L3 LINE CR1 -122 1455 1243 386 233 33 22 chr1 37181715 37181805 -245011859 - L2 LINE L2 -1 3271 3181 990 162 137 42 chr1 37181805 37182056 -245011608 + MLT1A1 LTR MaLR 1 305 -85 794 289 86 6 chr1 37182317 37182642 -245011022 - L2 LINE L2 -1919 1395 1045 246 62 0 0 chr1 37182642 37182674 -245010990 + (TA)n Simple_repeat Simple_repeat 1 32 0 784 178 22 4 chr1 37182674 37182896 -245010768 - L1MA4A LINE L1 -72 6231 5945 2007 196 57 77 chr1 37182942 37183089 -245010575 + L1MC5 LINE L1 6644 6792 -1169 2355 56 0 38 chr1 37183089 37183409 -245010255 + AluY SINE Alu 1 308 -3 2007 196 57 77 chr1 37183409 37183908 -245009756 + L1MC5 LINE L1 6792 7277 -684 992 223 50 22 chr1 37184058 37184377 -245009287 + L1MC5 LINE L1 7354 7681 -280 511 219 43 74 chr1 37184920 37185082 -245008582 - MIR SINE MIR -3 259 104 1074 138 0 0 chr1 37185874 37186034 -245007630 + FRAM SINE Alu 1 159 -17 545 282 68 63 chr1 37187813 37188241 -245005423 - L1ME4a LINE L1 -27 6094 5665 2192 82 3 0 chr1 37188241 37188532 -245005132 + AluY SINE Alu 1 292 -19 545 282 68 63 chr1 37188532 37188847 -245004817 - L1ME4a LINE L1 -456 5665 5353 312 120 0 0 chr1 37188996 37189046 -245004618 + (CA)n Simple_repeat Simple_repeat 1 50 0 407 297 92 36 chr1 37189149 37189509 -245004155 + L1ME4a LINE L1 5512 5891 -230 183 234 43 0 chr1 37190142 37190189 -245003475 + MIR SINE MIR 100 148 -114 2421 69 0 0 chr1 37190984 37191290 -245002374 + AluY SINE Alu 1 306 -5 471 325 137 22 chr1 37191400 37191809 -245001855 - L2 LINE L2 0 3313 2858 408 293 17 11 chr1 37191813 37192071 -245001593 + L1ME3A LINE L1 5540 5885 -277 752 285 141 47 chr1 37192379 37192912 -245000752 - L2 LINE L2 -479 2835 2253 205 338 91 39 chr1 37193198 37193352 -245000312 - MIR SINE MIR -72 190 29 200 443 18 0 chr1 37193385 37193498 -245000166 - L2 LINE L2 -203 3069 2955 275 290 228 28 chr1 37193773 37193918 -244999746 - L3 LINE CR1 -169 1408 1235 338 281 123 92 chr1 37194835 37195095 -244998569 - L2 LINE L2 -1 3271 3004 744 264 123 9 chr1 37195160 37195372 -244998292 - MIR SINE MIR -25 237 2 284 229 250 7 chr1 37195378 37195518 -244998146 - MER113 DNA MER1_type? -225 296 123 3442 186 68 3 chr1 37195520 37196226 -244997438 - L1MB4 LINE L1 -1 6179 5428 6555 115 11 21 chr1 37196255 37197445 -244996219 - L1MA8 LINE L1 -1 6290 5112 2800 203 47 0 chr1 37197460 37198130 -244995534 - L1MB4 LINE L1 -756 5428 4730 1102 187 0 32 chr1 37198141 37198360 -244995304 + AluJo SINE Alu 85 296 -16 1286 181 43 17 chr1 37198406 37198705 -244994959 - L1MB4 LINE L1 -1433 4713 4407 21 0 0 0 chr1 37198724 37198745 -244994919 + AT_rich Low_complexity Low_complexity 1 21 0 354 283 119 44 chr1 37198767 37198926 -244994738 + MIR SINE MIR 72 242 -20 468 278 29 28 chr1 37199209 37199389 -244994275 - MIR SINE MIR -69 139 11 1000 71 0 0 chr1 37199543 37199670 -244993994 - AluY SINE Alu -9 302 176 1514 232 78 11 chr1 37199690 37200125 -244993539 + Charlie4a DNA MER1_type 33 496 -12 293 341 31 8 chr1 37200681 37200810 -244992854 - L3 LINE CR1 -472 1105 974 314 315 138 9 chr1 37200811 37200969 -244992695 + MIR SINE MIR 17 191 -71 471 335 23 38 chr1 37200975 37201238 -244992426 - MIR SINE MIR -2 260 2 3544 121 21 31 chr1 37201358 37201521 -244992143 - L1MA7 LINE L1 0 6291 6128 2228 92 3 0 chr1 37201521 37201813 -244991851 + AluSq SINE Alu 1 293 -20 3544 121 21 31 chr1 37201813 37202268 -244991396 - L1MA7 LINE L1 -163 6128 5679 326 290 108 54 chr1 37202773 37203037 -244990627 + L1ME LINE L1 5194 5480 -698 423 271 72 32 chr1 37203077 37203328 -244990336 + L1ME LINE L1 5547 5807 -314 189 355 13 26 chr1 37204077 37204153 -244989511 + MER5A DNA MER1_type 43 117 -72 706 218 48 12 chr1 37205562 37205727 -244987937 - MIR SINE MIR 0 262 92 202 200 140 20 chr1 37206444 37206494 -244987170 - MIR SINE MIR -88 174 119 2247 80 0 26 chr1 37206891 37207202 -244986462 + AluSx SINE Alu 1 303 -9 536 132 66 0 chr1 37207639 37207745 -244985919 - L1MB2 LINE L1 -8 6163 6051 561 254 24 18 chr1 37208654 37208823 -244984841 - L1MB2 LINE L1 -108 6063 5894 243 0 0 0 chr1 37208823 37208850 -244984814 + (T)n Simple_repeat Simple_repeat 1 27 0 192 258 94 74 chr1 37209350 37209606 -244984058 - L2 LINE L2 -810 2504 2244 199 140 40 20 chr1 37211929 37211979 -244981685 + T-rich Low_complexity Low_complexity 5 55 0 559 75 32 65 chr1 37212366 37212459 -244981205 - FLAM_C SINE Alu -17 126 37 2828 93 3 3 chr1 37215011 37215386 -244978278 + THE1C LTR MaLR 1 375 0 826 163 0 15 chr1 37215961 37216096 -244977568 + AluSq/x SINE Alu 2 134 -179 399 286 27 27 chr1 37216096 37216243 -244977421 + L2 LINE L2 372 518 -2796 349 289 90 26 chr1 37216260 37216416 -244977248 - MIR SINE MIR -2 260 95 1847 195 51 34 chr1 37216571 37217038 -244976626 - L1MC5 LINE L1 -524 7831 7357 5314 136 8 14 chr1 37217064 37217777 -244975887 - L1PB3 LINE L1 -5 6149 5440 2209 97 3 3 chr1 37217777 37218086 -244975578 - AluSx SINE Alu -3 309 1 5314 136 8 14 chr1 37218086 37218228 -244975436 - L1PB3 LINE L1 -714 5440 5299 594 171 9 0 chr1 37218301 37218412 -244975252 - L1PB4 LINE L1 -3 6153 6042 504 259 228 4 chr1 37218434 37218666 -244974998 - L1MC5 LINE L1 -2269 5933 5650 232 319 72 32 chr1 37218795 37219074 -244974590 - L1MC5 LINE L1 -3558 2982 2693 344 308 103 34 chr1 37219141 37219404 -244974260 - L1MC5 LINE L1 -3895 2645 2365 1125 152 47 21 chr1 37219530 37219721 -244973943 + MER20 DNA MER1_type 23 218 -1 333 298 95 38 chr1 37219771 37219929 -244973735 - HAL1b LINE L1 -499 849 683 7166 48 6 44 chr1 37220180 37221322 -244972342 + SVA Other Other 405 1386 0 195 100 0 0 chr1 37221387 37221417 -244972247 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 557 355 99 53 chr1 37221491 37221769 -244971895 + HAL1 LINE L1 824 1088 -1419 1703 127 3 21 chr1 37221769 37222052 -244971612 + AluSx SINE Alu 34 311 -1 557 355 99 53 chr1 37222052 37222450 -244971214 + HAL1 LINE L1 1088 1531 -976 344 301 53 0 chr1 37222450 37222583 -244971081 + HAL1b LINE L1 475 614 -734 1732 160 80 1 chr1 37222704 37223273 -244970391 - L1M3 LINE L1 -593 5590 4969 26 50 0 0 chr1 37223456 37223496 -244970168 + AT_rich Low_complexity Low_complexity 1 40 0 487 270 185 10 chr1 37224922 37225122 -244968542 + MIR SINE MIR 28 262 0 678 234 22 56 chr1 37226271 37226502 -244967162 - ORSL DNA AcHobo 0 275 53 201 147 0 0 chr1 37227842 37227876 -244965788 + (TG)n Simple_repeat Simple_repeat 1 34 0 1694 176 110 6 chr1 37227954 37228308 -244965356 + MLT2D LTR ERVL 6 442 -22 322 170 11 117 chr1 37228348 37228442 -244965222 + L1MC4 LINE L1 6619 6702 -1340 252 160 0 20 chr1 37228515 37228565 -244965099 + MLT2D LTR ERVL 472 520 0 709 274 58 4 chr1 37228581 37228807 -244964857 + MIR SINE MIR 8 245 -17 24 32 0 0 chr1 37230791 37230822 -244962842 + AT_rich Low_complexity Low_complexity 1 31 0 425 113 0 0 chr1 37230828 37230899 -244962765 - L1MA7 LINE L1 0 6291 6221 517 138 0 0 chr1 37230899 37230979 -244962685 + L1MA6 LINE L1 6115 6194 -106 2010 113 177 8 chr1 37231808 37232170 -244961494 + MSTA LTR MaLR 6 428 0 286 204 0 0 chr1 37234927 37234976 -244958688 - L2 LINE L2 -2 3270 3222 856 273 151 3 chr1 37234995 37235387 -244958277 - L2 LINE L2 -280 3033 2584 834 239 200 49 chr1 37235604 37236073 -244957591 + MLT1H1 LTR MaLR 1 540 -15 4231 147 25 44 chr1 37236074 37236877 -244956787 + L1MB7 LINE L1 5380 6167 -17 319 188 68 21 chr1 37236891 37236994 -244956670 + L1M4c LINE L1 2148 2256 -3890 4413 150 9 4 chr1 37237045 37237731 -244955933 + Tigger1 DNA MER2_type 1 689 -1729 472 153 0 0 chr1 37237724 37237796 -244955868 - MER20 DNA MER1_type -42 177 106 * 11475 101 30 25 chr1 37237809 37238118 -244955546 + Tigger1 DNA MER2_type 685 991 -1427 2164 91 0 13 chr1 37238118 37238416 -244955248 - AluSc SINE Alu -6 303 10 11475 101 30 25 chr1 37238416 37239831 -244953833 + Tigger1 DNA MER2_type 991 2417 -1 767 112 0 124 chr1 37239863 37240041 -244953623 + Tigger1 DNA MER2_type 1609 1764 -654 2781 96 5 5 chr1 37240573 37240948 -244952716 + THE1C LTR MaLR 1 375 0 797 262 31 35 chr1 37241033 37241262 -244952402 - MIR SINE MIR -14 248 21 399 41 0 0 chr1 37241550 37241599 -244952065 + (CA)n Simple_repeat Simple_repeat 2 50 0 236 171 0 0 chr1 37242805 37242840 -244950824 + MLT1L LTR MaLR 360 394 -221 1305 309 44 2 chr1 37244377 37244807 -244948857 + L2 LINE L2 2862 3309 -4 340 335 96 11 chr1 37245224 37245412 -244948252 + MIR SINE MIR 2 205 -57 382 307 60 92 chr1 37245412 37245793 -244947871 - L2 LINE L2 -2 3270 2902 339 264 147 58 chr1 37245878 37246136 -244947528 - L2 LINE L2 -1150 2164 1884 2335 133 16 67 chr1 37246516 37246952 -244946712 + MLT2D LTR ERVL 1 414 0 413 274 26 34 chr1 37247050 37247167 -244946497 + L2 LINE L2 3149 3264 -8 325 344 58 19 chr1 37247188 37247447 -244946217 - L2 LINE L2 -1665 1649 1381 433 284 117 0 chr1 37247480 37247642 -244946022 - MIR SINE MIR -65 197 17 242 404 12 0 chr1 37247653 37247819 -244945845 - L2 LINE L2 -1929 1385 1218 * 257 269 30 15 chr1 37247811 37247878 -244945786 + L2 LINE L2 3234 3301 -12 201 39 0 0 chr1 37248003 37248029 -244945635 + (CAT)n Simple_repeat Simple_repeat 1 26 0 186 43 0 0 chr1 37248031 37248054 -244945610 + (CAG)n Simple_repeat Simple_repeat 1 23 0 629 304 68 41 chr1 37248060 37248280 -244945384 - MIR SINE MIR -24 238 13 692 202 0 0 chr1 37248500 37248624 -244945040 - FLAM_A SINE Alu -8 134 11 23 0 0 0 chr1 37249385 37249408 -244944256 + AT_rich Low_complexity Low_complexity 1 23 0 298 297 42 63 chr1 37249907 37250287 -244943377 + HAL1b LINE L1 39 410 -938 372 174 0 0 chr1 37250301 37250370 -244943294 + L1MA9 LINE L1 5938 6006 -306 883 299 98 24 chr1 37250372 37251379 -244942285 + L1M4 LINE L1 2110 3191 -2955 24 0 0 0 chr1 37251411 37251435 -244942229 + AT_rich Low_complexity Low_complexity 1 24 0 2026 131 3 0 chr1 37252122 37252419 -244941245 - AluSx SINE Alu -14 298 1 247 311 89 22 chr1 37253661 37253796 -244939868 + MER5B DNA MER1_type 29 172 -6 351 272 118 15 chr1 37253818 37253954 -244939710 - MER117 DNA MER1_type -41 156 7 1800 115 7 25 chr1 37254099 37254378 -244939286 - AluSx SINE Alu -11 301 28 1469 230 115 20 chr1 37254556 37254948 -244938716 + LTR16A LTR ERVL 16 444 -6 308 345 147 34 chr1 37255038 37255215 -244938449 + L2 LINE L2 3076 3272 0 600 243 52 78 chr1 37255786 37256054 -244937610 - MER102a DNA MER1_type -32 298 38 1672 265 82 63 chr1 37257208 37258189 -244935475 + HAL1 LINE L1 800 1798 -709 374 325 70 61 chr1 37259184 37259596 -244934068 - L2 LINE L2 -2786 528 113 330 247 174 93 chr1 37259939 37260243 -244933421 + L1ME4a LINE L1 5500 5778 -343 2122 98 0 0 chr1 37260243 37260529 -244933135 + AluSx SINE Alu 3 288 -24 330 247 174 93 chr1 37260529 37260783 -244932881 + L1ME4a LINE L1 5778 6103 -18 223 71 48 0 chr1 37261602 37261644 -244932020 + A-rich Low_complexity Low_complexity 83 126 0 399 283 107 16 chr1 37261771 37261983 -244931681 + MIR SINE MIR 5 230 -32 482 260 0 0 chr1 37262136 37262240 -244931424 - L2 LINE L2 0 3313 3210 1925 132 0 16 chr1 37262241 37262545 -244931119 + AluSx SINE Alu 14 312 0 351 232 0 24 chr1 37263214 37263296 -244930368 - MIR SINE MIR -122 140 61 2369 97 0 0 chr1 37263600 37263911 -244929753 - AluSq SINE Alu -2 311 1 186 250 21 0 chr1 37265090 37265138 -244928526 - MIR SINE MIR -162 100 52 1582 131 46 72 chr1 37265186 37265492 -244928172 + AluSx SINE Alu 15 312 0 1360 308 68 43 chr1 37265723 37266709 -244926955 + HERV16 LTR ERVL 994 2067 -2929 2257 314 36 18 chr1 37266714 37267552 -244926112 + HERV16 LTR ERVL 2469 3321 -2443 646 315 50 17 chr1 37268130 37268323 -244925341 + MIR SINE MIR 1 186 -76 2050 106 11 0 chr1 37268323 37268605 -244925059 + AluSc SINE Alu 2 286 -23 231 88 0 0 chr1 37268605 37268639 -244925025 + (TA)n Simple_repeat Simple_repeat 2 35 0 646 315 50 17 chr1 37268639 37268685 -244924979 + MIR SINE MIR 185 249 -13 621 271 77 11 chr1 37269754 37269935 -244923729 - MIR SINE MIR 0 262 70 220 283 11 65 chr1 37270286 37270378 -244923286 - L2 LINE L2 0 3272 3186 520 279 77 40 chr1 37271359 37271581 -244922083 - MIR SINE MIR -20 242 13 451 280 99 25 chr1 37271897 37272333 -244921331 - L1ME4a LINE L1 -1 6120 5653 447 373 0 0 chr1 37273240 37273374 -244920290 - L2 LINE L2 -5 3267 3134 325 244 99 8 chr1 37273377 37273508 -244920156 - L1ME4a LINE L1 -641 5480 5338 1789 131 13 52 chr1 37274064 37274370 -244919294 - AluJb SINE Alu -18 294 1 271 240 13 0 chr1 37274411 37274486 -244919178 - L1ME4a LINE L1 -61 6060 5985 363 44 0 0 chr1 37274528 37274573 -244919091 + (CA)n Simple_repeat Simple_repeat 1 45 0 2298 93 3 0 chr1 37274908 37275220 -244918444 - AluSp SINE Alu 0 313 1 1190 173 0 18 chr1 37275553 37275773 -244917891 - AluJo SINE Alu -10 302 87 237 140 40 0 chr1 37275931 37275981 -244917683 - L1M2 LINE L1 -657 5655 5604 1060 173 11 140 chr1 37276558 37276600 -244917064 + L1MB3 LINE L1 5624 5670 -513 2285 81 0 0 chr1 37276600 37276897 -244916767 + AluY SINE Alu 1 297 -14 1060 173 11 140 chr1 37276897 37277120 -244916544 + L1MB3 LINE L1 5670 5871 -312 375 332 68 61 chr1 37277169 37277272 -244916392 - L1MEc LINE L1 -3991 2405 2304 2113 133 75 23 chr1 37277272 37277618 -244916046 - THE1B LTR MaLR 0 364 1 375 332 68 61 chr1 37277618 37277939 -244915725 - L1MEc LINE L1 -4092 2304 1978 445 323 114 68 chr1 37277947 37278771 -244914893 - HAL1b LINE L1 -515 1271 16 2044 238 174 57 chr1 37278848 37280076 -244913588 - L1MC4 LINE L1 -95 7713 6443 2767 82 8 19 chr1 37280384 37280763 -244912901 - THE1C LTR MaLR 0 375 1 1044 290 110 16 chr1 37281396 37281958 -244911706 + L1ME3A LINE L1 5337 5951 -219 188 203 186 0 chr1 37282208 37282267 -244911397 + L2 LINE L2 3200 3269 -44 1171 226 39 40 chr1 37282384 37282598 -244911066 - MLT1A1 LTR MaLR 0 365 212 2014 76 4 0 chr1 37282598 37282861 -244910803 - AluSp SINE Alu -7 306 43 1171 226 39 40 chr1 37282861 37283073 -244910591 - MLT1A1 LTR MaLR -153 212 1 581 270 115 35 chr1 37283329 37283555 -244910109 - MIR SINE MIR -6 256 13 326 233 25 75 chr1 37283898 37284018 -244909646 + MIR SINE MIR 63 176 -86 * 503 305 0 14 chr1 37284015 37284156 -244909508 - MIR3 SINE MIR -38 170 32 372 325 42 0 chr1 37284662 37284782 -244908882 - MIR SINE MIR -131 131 7 904 160 128 16 chr1 37285694 37285882 -244907782 - MER3 DNA MER1_type 0 209 1 569 326 21 16 chr1 37286942 37287135 -244906529 + MIR SINE MIR 33 226 -36 459 310 85 61 chr1 37287508 37287918 -244905746 - L2 LINE L2 -24 3248 2829 213 319 32 0 chr1 37287953 37288047 -244905617 - L2 LINE L2 -1232 2082 1986 217 286 0 0 chr1 37288409 37288458 -244905206 - MIR SINE MIR -63 145 97 469 308 226 0 chr1 37289466 37289674 -244903990 + MIR SINE MIR 8 262 0 240 265 24 24 chr1 37289721 37289804 -244903860 - MIR SINE MIR -6 256 174 2036 181 57 14 chr1 37292401 37292843 -244900821 + MLT1C LTR MaLR 7 467 0 327 273 96 82 chr1 37293558 37293778 -244899886 + L1ME4a LINE L1 5825 6047 -74 1870 171 60 0 chr1 37293786 37294120 -244899544 + MLT1A1 LTR MaLR 1 354 -11 23 33 0 0 chr1 37294197 37294227 -244899437 + AT_rich Low_complexity Low_complexity 1 30 0 352 245 50 72 chr1 37295832 37295971 -244897693 + L1ME4a LINE L1 5798 5933 -188 351 321 54 9 chr1 37296000 37296112 -244897552 - L2 LINE L2 -16 3297 3181 256 340 83 23 chr1 37296393 37296615 -244897049 - L1ME3A LINE L1 -224 5946 5704 1728 63 5 0 chr1 37296615 37296821 -244896843 - AluY SINE Alu -13 298 92 256 340 83 23 chr1 37296821 37296863 -244896801 - L1ME3A LINE L1 -466 5704 5666 30 0 0 0 chr1 37298100 37298130 -244895534 + AT_rich Low_complexity Low_complexity 1 30 0 496 259 86 35 chr1 37299420 37299617 -244894047 + MIR SINE MIR 42 248 -14 274 282 288 12 chr1 37299839 37300009 -244893655 + MIR SINE MIR 35 251 -11 2376 117 0 0 chr1 37300161 37300470 -244893194 - AluSx SINE Alu -3 309 1 236 266 0 16 chr1 37301948 37302012 -244891652 + GA-rich Low_complexity Low_complexity 2 64 0 253 232 152 20 chr1 37302695 37302794 -244890870 - MIR SINE MIR -118 144 33 362 289 33 9 chr1 37303508 37303653 -244890011 - L1ME2 LINE L1 -29 6137 5989 216 0 0 0 chr1 37304739 37304763 -244888901 + (T)n Simple_repeat Simple_repeat 1 24 0 392 324 90 54 chr1 37304963 37305241 -244888423 + L2 LINE L2 2973 3260 -12 324 237 0 0 chr1 37305414 37305473 -244888191 + L2 LINE L2 3250 3308 -5 2556 161 139 5 chr1 37306662 37307222 -244886442 + L1MB7 LINE L1 5533 6167 -17 323 313 69 44 chr1 37307492 37307652 -244886012 - L2 LINE L2 -19 3253 3090 217 352 78 7 chr1 37309903 37310045 -244883619 - MIR SINE MIR -90 172 21 248 284 0 19 chr1 37310736 37310816 -244882848 - MIR3 SINE MIR -52 156 96 347 252 184 0 chr1 37311031 37311134 -244882530 + MER94 DNA DNA 2 123 -11 305 335 73 29 chr1 37312127 37312319 -244881345 + HAL1b LINE L1 65 247 -1101 2273 123 0 0 chr1 37312319 37312621 -244881043 + AluSx SINE Alu 1 302 -10 305 335 73 29 chr1 37312621 37313005 -244880659 + HAL1b LINE L1 247 609 -739 1571 91 0 0 chr1 37313676 37313874 -244879790 - AluSg/x SINE Alu -13 297 100 455 89 0 0 chr1 37313874 37313930 -244879734 + AluS SINE Alu 24 79 -234 210 171 0 24 chr1 37313952 37313993 -244879671 + CT-rich Low_complexity Low_complexity 1 40 0 384 40 0 0 chr1 37313998 37314048 -244879616 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 590 288 61 0 chr1 37314347 37314510 -244879154 - MIR SINE MIR -68 194 22 349 323 67 21 chr1 37314523 37315034 -244878630 + L1ME4a LINE L1 2659 3192 -2954 293 303 37 33 chr1 37315440 37315684 -244877980 + L1ME4a LINE L1 4300 4544 -1602 776 325 136 23 chr1 37315697 37316306 -244877358 + L1ME4a LINE L1 4563 5240 -906 753 283 103 22 chr1 37316343 37316877 -244876787 + L1ME4a LINE L1 5286 5862 -259 295 216 165 34 chr1 37316908 37317084 -244876580 + L1ME4a LINE L1 5922 6120 -1 410 315 134 0 chr1 37317928 37318055 -244875609 + L3 LINE CR1 1431 1574 -3 350 330 37 0 chr1 37318165 37318274 -244875390 + L2 LINE L2 3153 3265 -7 250 254 0 45 chr1 37322290 37322357 -244871307 - MIR SINE MIR -138 124 61 706 247 96 15 chr1 37322461 37322939 -244870725 + L2 LINE L2 2695 3298 -15 516 274 73 57 chr1 37323011 37323259 -244870405 + MLT1J LTR MaLR 220 471 -40 214 329 62 20 chr1 37323442 37323596 -244870068 + L2 LINE L2 3129 3264 -8 354 320 17 46 chr1 37323789 37323964 -244869700 - MIR SINE MIR -46 216 47 270 312 19 58 chr1 37324123 37324328 -244869336 + L1MC4a LINE L1 5712 5908 -1900 1077 158 108 5 chr1 37324348 37324551 -244869113 + MER58A DNA MER1_type 1 224 0 556 276 201 28 chr1 37324947 37325266 -244868398 + L2 LINE L2 2940 3313 0 507 281 33 0 chr1 37325725 37325846 -244867818 + L2 LINE L2 3189 3313 0 2251 118 13 3 chr1 37326002 37326308 -244867356 + AluSx SINE Alu 3 311 -1 201 39 0 0 chr1 37326315 37326341 -244867323 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 450 351 76 0 chr1 37327429 37327600 -244866064 - MIR SINE MIR -16 246 63 435 19 0 0 chr1 37327817 37327869 -244865795 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 198 245 19 19 chr1 37328929 37328982 -244864682 + MIR SINE MIR 176 228 -34 182 341 112 17 chr1 37329240 37329277 -244864387 - MIR SINE MIR -10 252 220 441 0 0 0 chr1 37329277 37329326 -244864338 + (CA)n Simple_repeat Simple_repeat 2 50 0 182 341 112 17 chr1 37329326 37329467 -244864197 - MIR SINE MIR -42 220 57 640 332 51 4 chr1 37329575 37329810 -244863854 - MIR SINE MIR 0 262 17 582 221 139 0 chr1 37329822 37329980 -244863684 + MER58A DNA MER1_type 45 224 0 195 368 138 24 chr1 37330115 37330455 -244863209 - L2 LINE L2 -2571 743 365 7977 111 16 19 chr1 37331439 37332013 -244861651 + HSMAR2 DNA Mariner 22 596 -706 2500 84 0 0 chr1 37332013 37332312 -244861352 + AluY SINE Alu 1 299 -12 7977 111 16 19 chr1 37332312 37333021 -244860643 + HSMAR2 DNA Mariner 596 1301 -1 229 250 0 0 chr1 37333023 37333071 -244860593 + L1ME LINE L1 5606 5653 -509 941 172 69 39 chr1 37333196 37333294 -244860370 - MER6B DNA MER2_type -655 210 116 2189 150 0 0 chr1 37333294 37333600 -244860064 + AluSx SINE Alu 1 306 -6 941 172 69 39 chr1 37333600 37333705 -244859959 - MER6B DNA MER2_type -749 116 1 460 330 70 65 chr1 37334079 37334537 -244859127 - L2 LINE L2 -5 3267 2808 1369 206 72 9 chr1 37334631 37334986 -244858678 - L1ME2 LINE L1 -2 6162 5783 521 347 181 17 chr1 37335031 37335867 -244857797 - L2 LINE L2 -618 2696 1724 442 294 56 14 chr1 37335973 37336116 -244857548 + MIR SINE MIR 108 256 -6 593 202 40 0 chr1 37336554 37336678 -244856986 + L1MB5 LINE L1 6038 6166 -8 2188 97 0 29 chr1 37336681 37336989 -244856675 - AluY SINE Alu -12 299 1 384 347 24 0 chr1 37337012 37337136 -244856528 + MIR SINE MIR 60 186 -76 474 293 125 34 chr1 37338113 37338321 -244855343 - MIR SINE MIR -10 252 26 472 307 7 21 chr1 37339136 37339276 -244854388 + MIR SINE MIR 20 157 -105 814 254 15 50 chr1 37339283 37339503 -244854161 - MIR SINE MIR -8 254 43 281 156 0 16 chr1 37340050 37340114 -244853550 + GA-rich Low_complexity Low_complexity 2 64 0 482 274 61 24 chr1 37340146 37340310 -244853354 - MIR SINE MIR -79 183 14 590 318 45 9 chr1 37340617 37340837 -244852827 + MIR SINE MIR 29 256 -6 1837 135 0 29 chr1 37341136 37341410 -244852254 + AluJb SINE Alu 22 287 -25 222 272 11 84 chr1 37342136 37342327 -244851337 + (CACCAT)n Simple_repeat Simple_repeat 4 180 0 1650 204 0 7 chr1 37342512 37342816 -244850848 + AluJo SINE Alu 2 303 -9 230 295 13 0 chr1 37343124 37343202 -244850462 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 577 170 11 0 chr1 37343750 37343844 -244849820 + MER58A DNA MER1_type 8 102 -5 243 323 21 0 chr1 37344114 37344210 -244849454 + MIR SINE MIR 117 214 -48 220 217 0 0 chr1 37344932 37344978 -244848686 - L2 LINE L2 -235 3037 2992 290 384 74 16 chr1 37346477 37346667 -244846997 + L2 LINE L2 2974 3174 -98 1222 167 16 25 chr1 37347749 37347994 -244845670 - L1MD3 LINE L1 -3 7992 7750 27 29 0 0 chr1 37348008 37348042 -244845622 + AT_rich Low_complexity Low_complexity 1 34 0 2170 74 14 21 chr1 37348451 37348770 -244844894 + AluY SINE Alu 1 317 0 229 295 18 54 chr1 37348788 37348900 -244844764 - L1ME LINE L1 -531 5590 5483 300 211 131 106 chr1 37348991 37349266 -244844398 - L1ME LINE L1 -743 5403 5122 1042 211 173 11 chr1 37349399 37349659 -244844005 - AluSp SINE Alu 0 303 2 364 284 71 46 chr1 37350148 37350472 -244843192 - L1ME LINE L1 -1481 4665 4334 225 0 0 0 chr1 37350474 37350499 -244843165 + (TG)n Simple_repeat Simple_repeat 2 26 0 264 100 0 0 chr1 37351130 37351170 -244842494 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 328 259 54 36 chr1 37351247 37351413 -244842251 - MIR SINE MIR -37 225 57 269 246 58 0 chr1 37351937 37352006 -244841658 - L2 LINE L2 -222 3091 3019 378 279 50 19 chr1 37352176 37352337 -244841327 - L2 LINE L2 -534 2780 2615 313 295 120 6 chr1 37352947 37353130 -244840534 - MIR SINE MIR -44 218 15 1628 211 56 44 chr1 37353561 37354011 -244839653 + MLT1C LTR MaLR 7 461 -6 237 341 0 22 chr1 37354187 37354278 -244839386 + L2 LINE L2 3180 3268 -4 213 303 0 13 chr1 37354776 37354852 -244838812 - L2 LINE L2 -190 3082 3008 189 0 0 0 chr1 37355831 37355852 -244837812 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 45118 37 5 0 chr1 37355928 37362049 -244831615 + L1PA4 LINE L1 1 6152 -3 1118 132 53 5 chr1 37362056 37362245 -244831419 + MSTB1 LTR MaLR 188 385 -47 220 224 0 0 chr1 37362245 37362294 -244831370 + A-rich Low_complexity Low_complexity 1 49 0 303 323 91 5 chr1 37363082 37363128 -244830536 + MIR SINE MIR 21 62 -200 2371 104 0 0 chr1 37363128 37363427 -244830237 - AluSc SINE Alu -10 299 1 303 323 91 5 chr1 37363427 37363578 -244830086 + MIR SINE MIR 62 235 -27 272 277 102 6 chr1 37363651 37363828 -244829836 - L1M4 LINE L1 -3582 2564 2371 1844 73 0 17 chr1 37363841 37364074 -244829590 - AluY SINE Alu -5 306 78 225 0 0 0 chr1 37364076 37364101 -244829563 + (T)n Simple_repeat Simple_repeat 1 25 0 410 214 0 29 chr1 37364706 37364809 -244828855 + MLT1J2 LTR MaLR 349 448 -2 1916 159 7 0 chr1 37364847 37365142 -244828522 - AluSx SINE Alu -15 297 1 1667 218 77 51 chr1 37365534 37365602 -244828062 - MLT1D LTR MaLR 0 505 440 2176 130 0 0 chr1 37365602 37365910 -244827754 + AluSx SINE Alu 1 308 -4 1667 218 77 51 chr1 37365910 37366333 -244827331 - MLT1D LTR MaLR -65 440 1 524 259 171 16 chr1 37369030 37369281 -244824383 + MLT1J LTR MaLR 222 511 0 219 324 65 28 chr1 37369298 37369406 -244824258 + L2 LINE L2 3158 3269 -3 290 242 84 73 chr1 37369698 37369876 -244823788 + L2 LINE L2 3129 3308 -5 284 309 59 29 chr1 37369891 37370027 -244823637 + MIR3 SINE MIR 7 146 -62 180 0 0 0 chr1 37370160 37370180 -244823484 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 494 269 151 5 chr1 37370884 37371070 -244822594 - MIR SINE MIR -35 227 15 349 261 87 40 chr1 37371875 37372230 -244821434 + L1MC4a LINE L1 5475 5824 -297 23 54 0 0 chr1 37372417 37372454 -244821210 + AT_rich Low_complexity Low_complexity 1 37 0 1912 135 31 24 chr1 37372462 37372751 -244820913 + AluSx SINE Alu 1 291 -21 368 273 8 0 chr1 37372932 37373064 -244820600 + GA-rich Low_complexity Low_complexity 1 133 0 229 341 14 73 chr1 37373626 37373846 -244819818 + L1MC4 LINE L1 7800 8006 -36 182 244 19 115 chr1 37374159 37374315 -244819349 + L2 LINE L2 2918 3058 -214 318 309 67 66 chr1 37374677 37375275 -244818389 - L2 LINE L2 0 3272 2678 326 307 52 18 chr1 37375911 37376037 -244817627 + MIR SINE MIR 37 164 -63 262 282 54 0 chr1 37376247 37376352 -244817312 - MIR SINE MIR -62 146 78 491 272 115 37 chr1 37376382 37376625 -244817039 - MIR SINE MIR 0 262 1 4814 145 35 27 chr1 37377131 37377695 -244815969 + L1MB7 LINE L1 5254 5812 -372 2153 119 0 3 chr1 37377695 37378010 -244815654 + AluSp SINE Alu 1 314 0 4814 145 35 27 chr1 37378010 37378282 -244815382 + L1MB7 LINE L1 5812 6101 -83 2043 141 37 45 chr1 37378282 37378658 -244815006 + THE1C LTR MaLR 3 375 0 4814 145 35 27 chr1 37378658 37378683 -244814981 + L1MB7 LINE L1 6101 6124 -60 393 305 94 0 chr1 37379900 37380028 -244813636 + L2 LINE L2 3133 3272 0 228 200 0 0 chr1 37381208 37381253 -244812411 + L2 LINE L2 3191 3235 -37 257 343 118 43 chr1 37381480 37381760 -244811904 + L2 LINE L2 2908 3208 -64 183 237 0 0 chr1 37382243 37382281 -244811383 - MIR SINE MIR -62 146 109 316 323 39 19 chr1 37383320 37383475 -244810189 - MIR SINE MIR -52 210 53 1888 165 47 33 chr1 37383601 37383930 -244809734 - L1MB8 LINE L1 -11 6167 5829 2391 84 7 0 chr1 37383930 37384226 -244809438 - AluSg SINE Alu -12 298 1 1888 165 47 33 chr1 37384226 37384320 -244809344 - L1MB8 LINE L1 -349 5829 5738 1434 185 50 57 chr1 37385815 37386274 -244807390 + L1MC5 LINE L1 7207 7662 -299 338 240 51 61 chr1 37386428 37386624 -244807040 - L1ME4a LINE L1 -123 5998 5805 198 182 30 61 chr1 37386676 37386742 -244806922 + L2 LINE L2 3209 3272 0 498 305 44 49 chr1 37386913 37387303 -244806361 - L1ME4a LINE L1 -1296 4850 4463 840 285 50 32 chr1 37387527 37387921 -244805743 - L1MB8 LINE L1 -450 5720 5327 546 272 32 43 chr1 37388178 37388524 -244805140 - L1MB8 LINE L1 -1941 4205 3864 461 100 29 0 chr1 37388529 37388599 -244805065 + MER116 DNA Mariner 1 72 -8 1573 105 4 42 chr1 37388677 37388916 -244804748 - AluY SINE Alu -8 303 74 1308 197 55 36 chr1 37389013 37389393 -244804271 - L1MA7 LINE L1 0 6334 5920 255 255 129 61 chr1 37389361 37389655 -244804009 - L1MB8 LINE L1 -2482 3664 3351 * 432 141 0 0 chr1 37389658 37389722 -244803942 - Alu SINE Alu -15 297 234 326 287 52 12 chr1 37389726 37389977 -244803687 - L1MB8 LINE L1 -2794 3352 3092 21 0 0 0 chr1 37390169 37390190 -244803474 + AT_rich Low_complexity Low_complexity 1 21 0 740 173 7 0 chr1 37390684 37390834 -244802830 + (TG)n Simple_repeat Simple_repeat 1 151 0 371 145 14 0 chr1 37391585 37391654 -244802010 + (CA)n Simple_repeat Simple_repeat 2 71 0 1307 147 0 0 chr1 37392494 37392736 -244800928 - AluJb SINE Alu 0 328 87 253 291 37 75 chr1 37393633 37393767 -244799897 - MIR SINE MIR -19 243 115 243 298 164 0 chr1 37394000 37394104 -244799560 + L2 LINE L2 3122 3242 -30 276 30 0 0 chr1 37394320 37394353 -244799311 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 237 305 61 79 chr1 37395271 37395435 -244798229 + MIR SINE MIR 91 251 -11 301 372 34 7 chr1 37397000 37397148 -244796516 - MIR SINE MIR -89 173 22 878 250 216 18 chr1 37397579 37397967 -244795697 + L2 LINE L2 2830 3294 -19 371 293 28 0 chr1 37398274 37398380 -244795284 - MIR SINE MIR -83 179 71 220 235 0 143 chr1 37400728 37400826 -244792838 - L2 LINE L2 0 3313 3230 266 319 43 43 chr1 37400874 37401037 -244792627 - L2 LINE L2 -177 3095 2933 900 245 0 11 chr1 37401919 37402103 -244791561 - MIR SINE MIR -68 194 13 499 213 142 11 chr1 37402482 37402641 -244791023 + MER5A DNA MER1_type 6 188 -1 302 208 30 89 chr1 37402876 37402977 -244790687 - L2 LINE L2 -24 3248 3154 425 302 60 55 chr1 37403552 37403787 -244789877 + MIR SINE MIR 13 248 -14 351 247 83 156 chr1 37404087 37404581 -244789083 - L2 LINE L2 -1 3271 2814 180 0 0 0 chr1 37404596 37404616 -244789048 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2073 100 3 10 chr1 37404620 37404911 -244788753 - AluSp SINE Alu -24 289 1 310 324 69 61 chr1 37405029 37405276 -244788388 + L2 LINE L2 2978 3226 -46 699 293 89 17 chr1 37405798 37406156 -244787508 - L1ME4a LINE L1 -123 5998 5615 483 205 0 0 chr1 37406162 37406245 -244787419 + MER2 DNA MER2_type 1 83 -262 471 318 96 60 chr1 37406260 37407122 -244786542 - L1ME4a LINE L1 -770 5376 4699 274 349 23 23 chr1 37407152 37407281 -244786383 + MER5B DNA MER1_type 1 129 -49 289 260 94 0 chr1 37407321 37407417 -244786247 + L2 LINE L2 3199 3303 -10 24 32 0 0 chr1 37407425 37407456 -244786208 + AT_rich Low_complexity Low_complexity 1 31 0 366 277 111 92 chr1 37407583 37407908 -244785756 + L3 LINE CR1 1241 1571 -6 822 152 116 61 chr1 37409749 37409947 -244783717 + MER58C DNA MER1_type 2 210 -5 467 290 0 23 chr1 37411026 37411157 -244782507 + L2 LINE L2 3145 3272 0 900 272 76 46 chr1 37411366 37411760 -244781904 + MLT1I LTR MaLR 4 409 0 495 233 159 37 chr1 37411860 37412023 -244781641 - MIR SINE MIR -35 227 45 516 278 156 10 chr1 37412354 37412559 -244781105 - MIR SINE MIR 0 262 28 279 231 118 142 chr1 37412595 37412764 -244780900 - MIR SINE MIR 0 262 98 29 0 0 0 chr1 37413363 37413392 -244780272 + AT_rich Low_complexity Low_complexity 1 29 0 1617 32 0 0 chr1 37413392 37413577 -244780087 - L1PA3 LINE L1 -3 6152 5968 2815 239 118 48 chr1 37413599 37415972 -244777692 + L1MC5 LINE L1 5364 7913 -48 230 279 66 0 chr1 37416125 37416186 -244777478 + L2 LINE L2 3248 3312 -1 1863 203 29 13 chr1 37416214 37416598 -244777066 + MLT1B LTR MaLR 1 390 0 783 236 39 81 chr1 37416718 37416976 -244776688 - MIR SINE MIR -6 256 10 789 261 77 31 chr1 37417263 37417435 -244776229 + MIR SINE MIR 16 202 -60 1917 136 55 33 chr1 37417435 37417802 -244775862 + THE1C LTR MaLR 1 375 0 789 261 77 31 chr1 37417802 37417851 -244775813 + MIR SINE MIR 202 247 -15 245 375 62 0 chr1 37417851 37417963 -244775701 + MIR SINE MIR 74 192 -70 654 164 18 0 chr1 37418265 37418375 -244775289 - FRAM SINE Alu -11 165 54 2209 119 0 0 chr1 37418412 37418722 -244774942 + AluSg SINE Alu 1 310 0 307 259 181 24 chr1 37418763 37418929 -244774735 - L1MDa LINE L1 -3900 2640 2449 512 277 126 13 chr1 37419090 37419249 -244774415 + MIR SINE MIR 37 213 -49 582 162 197 0 chr1 37419439 37419556 -244774108 + MER58B DNA MER1_type 202 341 0 2051 63 8 0 chr1 37420146 37420401 -244773263 + AluY SINE Alu 41 297 -14 223 340 60 38 chr1 37420950 37421135 -244772529 - MIR SINE MIR -54 208 20 673 246 126 9 chr1 37421346 37421561 -244772103 - MIR SINE MIR -2 260 21 306 322 87 0 chr1 37421642 37421757 -244771907 - L2 LINE L2 -4 3309 3185 268 173 0 39 chr1 37422228 37422280 -244771384 - L2 LINE L2 0 3313 3264 472 244 57 8 chr1 37423474 37423597 -244770067 - MIR SINE MIR -30 232 104 357 323 45 81 chr1 37423825 37424075 -244769589 + MIR SINE MIR 12 256 -6 322 333 0 0 chr1 37424656 37424752 -244768912 + (CA)n Simple_repeat Simple_repeat 1 96 0 258 356 82 20 chr1 37424823 37424969 -244768695 + MIR SINE MIR 107 261 -1 531 270 72 22 chr1 37424989 37425211 -244768453 + L3 LINE CR1 1272 1504 -73 319 280 11 32 chr1 37425276 37425369 -244768295 - MER5A DNA MER1_type -22 167 77 481 184 72 59 chr1 37425371 37425523 -244768141 + HAL1b LINE L1 1140 1293 -55 264 366 24 8 chr1 37425828 37425951 -244767713 - L2 LINE L2 0 3272 3148 496 178 72 59 chr1 37427780 37427932 -244765732 + HAL1b LINE L1 1140 1293 -55 496 337 99 39 chr1 37428467 37429003 -244764661 + L1ME LINE L1 5263 5817 -304 786 240 82 10 chr1 37429712 37429944 -244763720 - MIR SINE MIR -15 247 3 544 250 43 75 chr1 37430472 37430660 -244763004 + L2 LINE L2 3132 3313 0 446 310 99 81 chr1 37430903 37431187 -244762477 + HAL1b LINE L1 513 801 -547 472 204 19 19 chr1 37431690 37431793 -244761871 - MER5B DNA MER1_type -75 103 1 784 300 101 36 chr1 37432626 37432973 -244760691 + L1MC/D LINE L1 2570 2968 -3178 2387 55 6 6 chr1 37432973 37433284 -244760380 - AluY SINE Alu 0 311 1 784 300 101 36 chr1 37433284 37433489 -244760175 + L1MC/D LINE L1 2968 3158 -2988 262 275 93 39 chr1 37433938 37434120 -244759544 + L1MC/D LINE L1 4440 4631 -1515 736 292 30 17 chr1 37434195 37434428 -244759236 - MIR SINE MIR -24 238 3 674 320 100 18 chr1 37434473 37435083 -244758581 + L1MC/D LINE L1 4735 5444 -743 784 288 43 60 chr1 37435123 37435524 -244758140 - L2 LINE L2 -1211 2103 1697 1907 116 11 25 chr1 37435524 37435809 -244757855 - AluSc SINE Alu -28 281 1 784 288 43 60 chr1 37435809 37435821 -244757843 - L2 LINE L2 -1617 1697 1686 180 0 0 0 chr1 37435821 37435841 -244757823 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 784 288 43 60 chr1 37435841 37435978 -244757686 - L2 LINE L2 -1628 1686 1561 431 258 72 45 chr1 37435978 37436069 -244757595 - MER112 DNA MER1_type -1 259 172 2391 151 57 5 chr1 37436069 37436472 -244757192 + MSTB LTR MaLR 3 426 0 8323 179 74 3 chr1 37436472 37438014 -244755650 + MSTB-int LTR MaLR 1 1651 0 2538 163 9 21 chr1 37438014 37438443 -244755221 + MSTB LTR MaLR 1 424 -2 431 258 72 45 chr1 37438443 37438570 -244755094 - MER112 DNA MER1_type -87 173 33 383 333 105 14 chr1 37438642 37438993 -244754671 - L2 LINE L2 -1763 1551 1169 887 156 12 117 chr1 37439519 37439775 -244753889 - AluJo SINE Alu -13 299 71 362 341 176 13 chr1 37439873 37440175 -244753489 + L2 LINE L2 1965 2315 -999 532 338 49 21 chr1 37440295 37440579 -244753085 - L2 LINE L2 -203 3110 2819 4873 30 0 0 chr1 37440634 37441197 -244752467 + L1PA3 LINE L1 5592 6154 -1 238 214 0 36 chr1 37441228 37441284 -244752380 + L2 LINE L2 2335 2388 -926 804 359 101 24 chr1 37441434 37442157 -244751507 + L2 LINE L2 2217 2995 -277 340 262 33 49 chr1 37442411 37442533 -244751131 - L2 LINE L2 -66 3247 3128 351 269 49 91 chr1 37442590 37442939 -244750725 + MLT1I LTR MaLR 73 450 0 343 297 135 26 chr1 37442944 37443136 -244750528 - L2 LINE L2 -211 3102 2890 2576 74 0 0 chr1 37443195 37443506 -244750158 - AluY SINE Alu 0 311 1 607 219 47 0 chr1 37443660 37443788 -244749876 + MER94 DNA DNA 1 134 0 265 306 41 96 chr1 37444425 37444644 -244749020 + MIR SINE MIR 50 256 -6 387 327 26 18 chr1 37446653 37446766 -244746898 + L2 LINE L2 3133 3246 -26 235 346 50 28 chr1 37447189 37447371 -244746293 - MER5A DNA MER1_type -1 188 3 793 327 75 69 chr1 37448862 37449703 -244743961 + L1M4 LINE L1 4411 5284 -862 207 200 0 0 chr1 37450058 37450098 -244743566 + (TG)n Simple_repeat Simple_repeat 2 41 0 328 257 148 10 chr1 37450246 37450347 -244743317 + L2 LINE L2 3199 3313 0 225 350 114 0 chr1 37450431 37450554 -244743110 + L2 LINE L2 3136 3272 0 302 244 62 85 chr1 37450567 37450743 -244742921 + L1ME LINE L1 4366 4537 -1609 363 350 25 20 chr1 37450780 37450980 -244742684 + L1ME LINE L1 5533 5733 -388 182 247 52 52 chr1 37451727 37451804 -244741860 + L3 LINE CR1 676 752 -825 191 315 117 25 chr1 37451848 37452010 -244741654 + MIR SINE MIR 52 228 -34 1004 181 73 15 chr1 37452135 37452340 -244741324 + MER20 DNA MER1_type 2 218 -1 360 64 0 0 chr1 37452408 37452455 -244741209 + (TG)n Simple_repeat Simple_repeat 2 48 0 187 188 0 0 chr1 37454248 37454280 -244739384 + L2 LINE L2 3143 3174 -98 196 137 39 0 chr1 37457514 37457565 -244736099 + GA-rich Low_complexity Low_complexity 1 53 0 252 0 0 0 chr1 37457983 37458011 -244735653 + (TG)n Simple_repeat Simple_repeat 1 28 0 267 335 210 17 chr1 37458744 37458920 -244734744 - L2 LINE L2 -13 3259 3050 1129 213 38 64 chr1 37458921 37459344 -244734320 + MER96B DNA MER1_type? 6 417 0 351 282 217 53 chr1 37459418 37460916 -244732748 - L2 LINE L2 -853 2461 718 244 308 47 28 chr1 37461894 37462001 -244731663 + L2 LINE L2 2946 3054 -218 850 115 0 0 chr1 37462055 37462168 -244731496 - FRAM SINE Alu -10 166 54 279 277 213 11 chr1 37462223 37462317 -244731347 - L2 LINE L2 0 3313 3201 427 197 38 76 chr1 37462365 37462497 -244731167 + L2 LINE L2 3182 3308 -5 199 351 43 32 chr1 37462501 37462595 -244731069 - L2 LINE L2 -39 3233 3139 299 320 134 23 chr1 37462704 37463048 -244730616 + L2 LINE L2 2425 2806 -508 648 228 129 6 chr1 37463136 37463307 -244730357 + MIR SINE MIR 3 194 -68 297 305 72 87 chr1 37463434 37463768 -244729896 + L2 LINE L2 2938 3266 -6 297 282 55 18 chr1 37463971 37464081 -244729583 + L2 LINE L2 3151 3264 -8 538 307 118 49 chr1 37465082 37465369 -244728295 + L2 LINE L2 2964 3270 -2 333 292 96 28 chr1 37466221 37466419 -244727245 - MIR SINE MIR -17 245 30 217 274 14 27 chr1 37466550 37466623 -244727041 - L2 LINE L2 -5 3267 3196 265 365 125 24 chr1 37466670 37467095 -244726569 - L2 LINE L2 -501 2813 2346 1001 224 45 72 chr1 37467098 37467284 -244726380 + MLT1B LTR MaLR 1 176 -214 360 43 0 0 chr1 37467284 37467330 -244726334 + (TC)n Simple_repeat Simple_repeat 1 46 0 1001 224 45 72 chr1 37467330 37467474 -244726190 + MLT1B LTR MaLR 176 322 -68 461 216 29 0 chr1 37467596 37467698 -244725966 + MLT1C LTR MaLR 1 105 -362 523 267 128 31 chr1 37468643 37468838 -244724826 - MIR SINE MIR -29 233 20 233 377 0 0 chr1 37469012 37469089 -244724575 + L2 LINE L2 3191 3267 -5 557 192 8 56 chr1 37469256 37469381 -244724283 + MIR SINE MIR 25 143 -119 398 277 32 19 chr1 37469682 37469837 -244723827 - L3 LINE CR1 -273 1304 1148 180 376 45 25 chr1 37469929 37470086 -244723578 - L3 LINE CR1 -722 855 696 213 217 43 43 chr1 37470253 37470322 -244723342 - MIR3 SINE MIR -129 79 11 511 255 76 13 chr1 37470436 37470593 -244723071 - MIR SINE MIR -56 206 40 1588 206 73 5 chr1 37470737 37471136 -244722528 + MLT1C LTR MaLR 1 426 -41 197 229 86 105 chr1 37471763 37471868 -244721796 - MIR SINE MIR -43 219 117 259 300 129 9 chr1 37471940 37472080 -244721584 - MIR SINE MIR -51 211 43 2440 96 0 0 chr1 37472080 37472382 -244721282 + AluSx SINE Alu 1 302 -10 259 300 129 9 chr1 37472382 37472412 -244721252 - MIR SINE MIR -219 43 18 331 264 114 70 chr1 37473187 37473388 -244720276 - MIR SINE MIR -21 241 32 435 259 30 30 chr1 37473765 37473900 -244719764 + MIR3 SINE MIR 67 201 -7 1565 207 57 94 chr1 37474048 37474524 -244719140 + MLT2B1 LTR ERVL 1 456 -64 860 52 52 17 chr1 37474524 37474698 -244718966 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 1565 207 57 94 chr1 37474698 37474761 -244718903 + MLT2B1 LTR ERVL 456 520 0 311 248 227 17 chr1 37475071 37475247 -244718417 + MIR SINE MIR 36 255 -7 1984 153 0 7 chr1 37475342 37475642 -244718022 - AluJb SINE Alu -14 298 1 410 283 115 53 chr1 37476897 37477141 -244716523 - L2 LINE L2 -9 3263 3005 236 302 44 57 chr1 37478176 37478335 -244715329 - L2 LINE L2 -213 3100 2944 236 341 67 24 chr1 37478389 37478553 -244715111 - L2 LINE L2 -447 2867 2697 233 314 91 51 chr1 37479712 37479887 -244713777 + L2 LINE L2 3074 3255 -17 1153 238 5 0 chr1 37479980 37480203 -244713461 - MER58A DNA MER1_type 0 224 1 229 273 18 0 chr1 37480275 37480330 -244713334 - MIR SINE MIR -19 243 188 4980 60 8 3 chr1 37480344 37481464 -244712200 + MER11A LTR ERVK 1 1266 0 551 245 66 7 chr1 37481472 37481623 -244712041 - MIR SINE MIR -101 161 2 253 263 0 0 chr1 37482351 37482408 -244711256 - L2 LINE L2 -6 3266 3210 708 210 47 70 chr1 37483144 37483358 -244710306 + MER58C DNA MER1_type 1 209 -6 526 282 59 23 chr1 37483701 37483921 -244709743 + MLT1J LTR MaLR 233 460 -51 185 302 186 0 chr1 37484532 37484618 -244709046 - L2 LINE L2 0 3272 3171 338 221 13 13 chr1 37484946 37485023 -244708641 + L2 LINE L2 3196 3272 0 262 231 39 0 chr1 37485201 37485279 -244708385 + CT-rich Low_complexity Low_complexity 2 82 0 575 291 192 8 chr1 37485581 37485945 -244707719 - L2 LINE L2 -14 3258 2828 387 277 80 15 chr1 37486001 37486138 -244707526 + MER5A DNA MER1_type 38 183 -6 343 299 68 8 chr1 37487566 37487683 -244705981 - L2 LINE L2 0 3272 3149 656 324 23 27 chr1 37487989 37488251 -244705413 + MIR SINE MIR 2 262 0 330 311 201 5 chr1 37488352 37488561 -244705103 + L2 LINE L2 2844 3093 -179 198 0 0 0 chr1 37489546 37489568 -244704096 + (TAAAAA)n Simple_repeat Simple_repeat 3 24 0 1314 220 52 57 chr1 37489589 37489976 -244703688 + MLT1B LTR MaLR 1 385 -5 1324 252 126 53 chr1 37490284 37491318 -244702346 + L1MEd LINE L1 419 1542 -4587 826 102 40 0 chr1 37491318 37491457 -244702207 + L1PA16 LINE L1 6011 6157 -9 1324 252 126 53 chr1 37491457 37491612 -244702052 + L1MEd LINE L1 1542 1684 -4445 3651 305 81 29 chr1 37491845 37494252 -244699412 + L1MEd LINE L1 2119 4650 -1479 329 204 107 10 chr1 37494302 37494405 -244699259 + L1ME3A LINE L1 5824 5936 -234 321 235 165 9 chr1 37496191 37496306 -244697358 - L2 LINE L2 -2 3270 3138 415 301 60 44 chr1 37496672 37496855 -244696809 + MIR SINE MIR 59 244 -18 970 360 41 17 chr1 37498117 37498701 -244694963 + L2 LINE L2 926 1523 -1791 428 277 66 24 chr1 37499267 37499433 -244694231 + L2 LINE L2 1911 2083 -1231 360 185 25 12 chr1 37499466 37499547 -244694117 + L1MC4 LINE L1 7961 8042 0 237 338 129 0 chr1 37499655 37499794 -244693870 + MIR SINE MIR 27 183 -79 195 129 0 0 chr1 37499952 37499983 -244693681 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 337 303 62 16 chr1 37500120 37500254 -244693410 - MIR SINE MIR -67 141 14 202 217 0 67 chr1 37500875 37500935 -244692729 - L2 LINE L2 0 3272 3217 274 301 26 26 chr1 37501483 37501596 -244692068 - MIR SINE MIR -68 140 28 432 297 40 7 chr1 37501760 37501908 -244691756 - MIR SINE MIR -59 203 51 421 209 181 0 chr1 37502358 37502463 -244691201 - L2 LINE L2 -2 3311 3188 217 246 51 94 chr1 37502487 37502625 -244691039 - MIR SINE MIR -40 222 91 376 316 7 43 chr1 37503513 37503652 -244690012 + L2 LINE L2 3139 3272 0 207 0 0 0 chr1 37504633 37504656 -244689008 + (A)n Simple_repeat Simple_repeat 1 23 0 335 325 50 17 chr1 37505707 37505827 -244687837 - L2 LINE L2 -11 3302 3179 235 247 0 82 chr1 37508092 37508177 -244685487 - MIR SINE MIR -69 193 116 348 321 0 43 chr1 37508750 37508937 -244684727 + GA-rich Low_complexity Low_complexity 2 180 0 244 262 16 0 chr1 37509542 37509603 -244684061 + GA-rich Low_complexity Low_complexity 1 62 0 727 245 91 25 chr1 37510290 37510576 -244683088 + MLT1H LTR MaLR 1 305 -244 1420 265 137 6 chr1 37511071 37511776 -244681888 + L2 LINE L2 2459 3261 -52 332 269 62 69 chr1 37511775 37511905 -244681759 - MIR SINE MIR -65 197 69 * 970 360 41 17 chr1 37562416 37563000 -244630664 + L2 LINE L2 926 1523 -1791 428 277 66 24 chr1 37563566 37563732 -244629932 + L2 LINE L2 1911 2083 -1231 360 185 25 12 chr1 37563765 37563846 -244629818 + L1MC4 LINE L1 7961 8042 0 237 338 129 0 chr1 37563954 37564093 -244629571 + MIR SINE MIR 27 183 -79 195 129 0 0 chr1 37564251 37564282 -244629382 + (GGAGA)n Simple_repeat Simple_repeat 1 31 0 337 303 62 16 chr1 37564419 37564553 -244629111 - MIR SINE MIR -67 141 14 202 217 0 67 chr1 37565174 37565234 -244628430 - L2 LINE L2 0 3272 3217 274 301 26 26 chr1 37565782 37565895 -244627769 - MIR SINE MIR -68 140 28 432 297 40 7 chr1 37566059 37566207 -244627457 - MIR SINE MIR -59 203 51 421 209 181 0 chr1 37566656 37566761 -244626903 - L2 LINE L2 -2 3311 3188 217 246 51 94 chr1 37566785 37566923 -244626741 - MIR SINE MIR -40 222 91 376 316 7 43 chr1 37567811 37567950 -244625714 + L2 LINE L2 3139 3272 0 207 0 0 0 chr1 37568931 37568954 -244624710 + (A)n Simple_repeat Simple_repeat 1 23 0 335 325 50 17 chr1 37570005 37570125 -244623539 - L2 LINE L2 -11 3302 3179 235 247 0 82 chr1 37572370 37572455 -244621209 - MIR SINE MIR -69 193 116 348 321 0 43 chr1 37573028 37573215 -244620449 + GA-rich Low_complexity Low_complexity 2 180 0 244 262 16 0 chr1 37573820 37573881 -244619783 + GA-rich Low_complexity Low_complexity 1 62 0 727 245 91 25 chr1 37574568 37574854 -244618810 + MLT1H LTR MaLR 1 305 -244 1447 265 138 5 chr1 37575349 37576053 -244617611 + L2 LINE L2 2459 3261 -52 332 269 62 69 chr1 37576052 37576182 -244617482 - MIR SINE MIR -65 197 69 * 987 48 8 0 chr1 37577760 37577886 -244615778 - L1PA4 LINE L1 -3 6152 6026 44934 38 2 1 chr1 37577886 37584071 -244609593 + L1PA3 LINE L1 4 6195 0 9875 92 1 0 chr1 37584089 37585377 -244608287 - L1P LINE L1 -4857 1289 1 377 286 41 58 chr1 37588646 37588817 -244604847 + L2 LINE L2 2924 3091 -181 185 316 63 0 chr1 37588887 37588966 -244604698 + L2 LINE L2 3189 3272 0 340 268 184 84 chr1 37590321 37590809 -244602855 + L2 LINE L2 2243 2779 -535 1640 174 26 13 chr1 37590910 37591221 -244602443 - MER58B DNA MER1_type -4 337 23 190 283 19 0 chr1 37591614 37591667 -244601997 - MIR SINE MIR -123 85 32 408 219 0 0 chr1 37591920 37591993 -244601671 + LTR33 LTR ERVL 21 93 -428 667 267 83 64 chr1 37592067 37592475 -244601189 + LTR33 LTR ERVL 102 517 -4 410 168 19 75 chr1 37592566 37592673 -244600991 + MER20 DNA MER1_type 2 102 -117 772 164 0 0 chr1 37592709 37592831 -244600833 + MER20 DNA MER1_type 98 219 0 682 275 43 19 chr1 37592944 37593155 -244600509 + MIR SINE MIR 1 216 -46 428 305 133 26 chr1 37593270 37593503 -244600161 - MER112 DNA MER1_type 0 260 3 485 270 46 63 chr1 37593572 37593746 -244599918 + MIR SINE MIR 56 226 -36 366 264 183 30 chr1 37594516 37594713 -244598951 - L3 LINE CR1 -125 1452 1226 565 338 140 0 chr1 37594777 37595005 -244598659 + MIR SINE MIR 2 261 -1 354 251 274 28 chr1 37595796 37595975 -244597689 + MIR SINE MIR 29 251 -11 547 294 43 15 chr1 37596067 37596286 -244597378 + MIR SINE MIR 18 247 -15 893 288 92 28 chr1 37596512 37596935 -244596729 - LTR33 LTR ERVL -71 450 1 938 238 45 42 chr1 37597678 37598010 -244595654 + L1ME1 LINE L1 5801 6133 -33 664 183 0 0 chr1 37598012 37598127 -244595537 + FLAM_C SINE Alu 1 115 -28 683 267 87 28 chr1 37598254 37598554 -244595110 + L2 LINE L2 2735 3051 -262 552 246 18 0 chr1 37598725 37598839 -244594825 - MIR SINE MIR -144 118 3 530 363 60 33 chr1 37600764 37601128 -244592536 + L2 LINE L2 2864 3237 -35 815 216 106 34 chr1 37601148 37601356 -244592308 + MER58A DNA MER1_type 1 223 -1 303 180 0 0 chr1 37601614 37601664 -244592000 - L2 LINE L2 -2 3311 3262 304 399 7 13 chr1 37602267 37602420 -244591244 - L3 LINE CR1 -5 1572 1421 376 294 173 40 chr1 37602421 37602693 -244590971 + L2 LINE L2 2948 3255 -17 269 132 19 19 chr1 37603651 37603704 -244589960 + MLT1K LTR MaLR 193 245 -343 610 309 132 5 chr1 37604297 37604517 -244589147 + MIR SINE MIR 12 259 -3 295 325 6 66 chr1 37605162 37605328 -244588336 + MIR3 SINE MIR 46 201 -7 838 228 70 23 chr1 37605418 37605633 -244588031 + MIR SINE MIR 23 247 -15 355 272 95 78 chr1 37605795 37606148 -244587516 - MLT1K LTR MaLR -91 497 67 409 263 50 10 chr1 37606791 37606890 -244586774 + MIR SINE MIR 12 114 -148 306 284 0 18 chr1 37607196 37607305 -244586359 + (TGAG)n Simple_repeat Simple_repeat 1 107 0 2390 189 18 39 chr1 37607470 37607979 -244585685 - MLT1D LTR MaLR 0 505 8 232 286 43 14 chr1 37608117 37608187 -244585477 - MER5B DNA MER1_type -105 73 2 190 216 0 0 chr1 37608279 37608316 -244585348 - MER5B DNA MER1_type -7 171 135 2600 209 21 12 chr1 37608317 37608890 -244584774 - L1MD3 LINE L1 -14 7981 7404 344 140 53 0 chr1 37608890 37608947 -244584717 - MLT1F1 LTR MaLR -442 125 66 426 240 10 31 chr1 37609045 37609141 -244584523 - MIR SINE MIR -162 100 7 313 191 71 121 chr1 37609205 37609346 -244584318 - MER112 DNA MER1_type -6 254 121 452 247 19 82 chr1 37609359 37609517 -244584147 + MIR SINE MIR 105 252 -10 277 264 14 14 chr1 37609520 37609592 -244584072 - MER112 DNA MER1_type -181 79 8 907 220 58 11 chr1 37609616 37609807 -244583857 + MER58A DNA MER1_type 2 201 -23 809 254 95 42 chr1 37610015 37610472 -244583192 - LTR33 LTR ERVL -7 514 1 477 0 0 0 chr1 37610709 37610762 -244582902 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 362 8 39 chr1 37611385 37611512 -244582152 + MIR SINE MIR 25 147 -61 559 154 8 16 chr1 37613252 37613375 -244580289 + GA-rich Low_complexity Low_complexity 2 123 0 361 248 37 0 chr1 37613884 37613993 -244579671 + MLT1K LTR MaLR 153 265 -323 218 344 0 0 chr1 37614892 37614956 -244578708 + L2 LINE L2 1361 1424 -1890 444 252 86 7 chr1 37615183 37615322 -244578342 + MIR SINE MIR 88 237 -25 2170 199 53 91 chr1 37615325 37615933 -244577731 + MLT1E LTR MaLR 1 585 -8 928 258 92 65 chr1 37616681 37616821 -244576843 - L2 LINE L2 0 3313 3178 2070 111 0 0 chr1 37616821 37617132 -244576532 + AluSg SINE Alu 1 311 0 928 258 92 65 chr1 37617132 37617454 -244576210 - L2 LINE L2 -135 3178 2836 206 328 0 31 chr1 37617502 37617566 -244576098 + L3 LINE CR1 588 649 -928 998 158 23 6 chr1 37617869 37618040 -244575624 - MER5A DNA MER1_type 0 189 16 1134 200 226 84 chr1 37619056 37619537 -244574127 + MLT1E LTR MaLR 2 571 -22 912 262 109 22 chr1 37619557 37619780 -244573884 + MLT1F1-int LTR MaLR 1 203 -1168 2032 137 111 28 chr1 37619780 37619982 -244573682 - MSTC LTR MaLR 0 428 244 1830 142 31 0 chr1 37619982 37620271 -244573393 - AluSg SINE Alu -12 298 1 2032 137 111 28 chr1 37620271 37620463 -244573201 - MSTC LTR MaLR -184 244 1 912 262 109 22 chr1 37620463 37620705 -244572959 + MLT1F1-int LTR MaLR 203 606 -765 801 230 30 157 chr1 37621212 37621682 -244571982 + MLT1F1-int LTR MaLR 961 1370 -1 1679 253 88 17 chr1 37621683 37622219 -244571445 + MLT1F1 LTR MaLR 1 567 0 409 359 111 35 chr1 37622248 37622591 -244571073 + L2 LINE L2 2897 3265 -7 272 163 0 0 chr1 37622606 37622655 -244571009 - MER90 LTR ERV1 -126 449 401 187 264 132 9 chr1 37622656 37622762 -244570902 - MIR SINE MIR -42 220 102 478 280 75 32 chr1 37623747 37623835 -244569829 - MIR SINE MIR -4 258 175 2857 195 28 21 chr1 37623835 37624445 -244569219 - MER90 LTR ERV1 0 614 1 478 280 75 32 chr1 37624445 37624542 -244569122 - MIR SINE MIR -87 175 65 385 304 65 43 chr1 37624644 37624864 -244568800 + MIR SINE MIR 10 233 -29 762 259 166 0 chr1 37624873 37625078 -244568586 - MIR SINE MIR -19 243 5 186 212 82 94 chr1 37627042 37627127 -244566537 - MIR3 SINE MIR -14 194 111 309 231 62 97 chr1 37628073 37628268 -244565396 + MIR SINE MIR 48 235 -27 584 271 64 16 chr1 37628269 37628457 -244565207 - MIR SINE MIR -2 260 64 210 313 152 36 chr1 37628460 37628572 -244565092 + L2 LINE L2 3148 3272 0 228 330 160 0 chr1 37629366 37629460 -244564204 - L2 LINE L2 -42 3230 3122 605 249 120 42 chr1 37630177 37630535 -244563129 - L1ME4a LINE L1 -211 5910 5525 228 220 40 0 chr1 37630542 37630592 -244563072 - MIR SINE MIR -150 112 61 284 179 30 0 chr1 37631162 37631229 -244562435 + CT-rich Low_complexity Low_complexity 1 69 0 418 295 230 14 chr1 37631311 37631589 -244562075 - L3 LINE CR1 -14 1563 1226 420 204 71 72 chr1 37631614 37631784 -244561880 + MIR SINE MIR 31 198 -64 576 339 141 14 chr1 37632538 37633169 -244560495 + L2 LINE L2 2148 2858 -456 412 254 166 28 chr1 37633392 37633573 -244560091 - MIR SINE MIR -26 236 31 198 167 0 0 chr1 37633797 37633833 -244559831 + (CAATT)n Simple_repeat Simple_repeat 2 37 0 746 284 70 9 chr1 37634192 37634421 -244559243 + MIR SINE MIR 13 255 -7 373 354 88 8 chr1 37634536 37634796 -244558868 - L2 LINE L2 -527 2787 2507 307 325 114 26 chr1 37635221 37635449 -244558215 - MIR SINE MIR -12 250 3 710 252 169 21 chr1 37635482 37635819 -244557845 + L1ME4a LINE L1 5516 5902 -219 1179 296 78 40 chr1 37636096 37637122 -244556542 + L1ME4a LINE L1 4101 5203 -1278 2173 67 0 11 chr1 37637122 37637435 -244556229 - AluY SINE Alu 0 310 1 1179 296 78 40 chr1 37637435 37637981 -244555683 + L1ME4a LINE L1 5203 5727 -754 324 127 0 0 chr1 37638119 37638174 -244555490 + (TG)n Simple_repeat Simple_repeat 2 56 0 310 231 322 0 chr1 37638408 37638529 -244555135 + L1ME4a LINE L1 5962 6121 0 2321 87 0 0 chr1 37638585 37638895 -244554769 - AluY SINE Alu -1 310 1 22 0 0 0 chr1 37638900 37638922 -244554742 + AT_rich Low_complexity Low_complexity 1 22 0 7733 24 1 0 chr1 37638938 37640435 -244553229 + L1PA3 LINE L1 4668 6162 0 30 69 0 0 chr1 37640626 37640684 -244552980 + AT_rich Low_complexity Low_complexity 1 58 0 3453 78 0 2 chr1 37640690 37641140 -244552524 - L1PB2 LINE L1 -1 6150 5702 220 209 179 0 chr1 37641645 37641712 -244551952 - MIR SINE MIR -103 159 81 1448 281 49 15 chr1 37642636 37643105 -244550559 + LTR16C LTR ERVL 1 485 -6 205 338 25 0 chr1 37643360 37643440 -244550224 + MIR SINE MIR 106 187 -75 410 270 152 38 chr1 37643444 37643655 -244550009 - MIR SINE MIR 0 262 28 379 227 10 21 chr1 37644865 37644962 -244548702 + MIR SINE MIR 58 153 -55 942 258 18 18 chr1 37645100 37645375 -244548289 - L2 LINE L2 -222 3091 2817 246 316 211 0 chr1 37645680 37645794 -244547870 + MIR3 SINE MIR 30 167 -41 331 319 121 7 chr1 37646169 37646310 -244547354 - MIR SINE MIR -10 252 96 388 195 9 20 chr1 37646409 37646517 -244547147 - MIR SINE MIR -68 140 37 337 274 66 28 chr1 37647752 37647858 -244545806 + MIR3 SINE MIR 15 124 -84 191 298 18 0 chr1 37648094 37648151 -244545513 - MIR SINE MIR -55 153 96 299 306 52 41 chr1 37648507 37648669 -244544995 - MIR SINE MIR -25 183 15 411 289 144 12 chr1 37648713 37648860 -244544804 + MIR SINE MIR 5 181 -81 2345 100 0 10 chr1 37648860 37649160 -244544504 + AluSq SINE Alu 1 297 -16 411 289 144 12 chr1 37649160 37649234 -244544430 + MIR SINE MIR 181 244 -18 196 193 18 53 chr1 37649200 37649257 -244544407 + L2 LINE L2 3255 3309 -4 * 260 215 101 51 chr1 37649424 37649503 -244544161 + MIR SINE MIR 110 192 -70 262 306 91 41 chr1 37649717 37649838 -244543826 - L2 LINE L2 -4 3309 3183 284 286 59 25 chr1 37650014 37650133 -244543531 + L2 LINE L2 3191 3313 0 354 313 31 68 chr1 37650343 37650535 -244543129 - MER5A DNA MER1_type -2 187 3 373 216 52 0 chr1 37650807 37650904 -244542760 - MER5B DNA MER1_type -3 175 74 718 284 152 10 chr1 37652282 37652585 -244541079 - L2 LINE L2 -337 2977 2632 627 105 1 20 chr1 37652714 37652833 -244540831 + L1MB3 LINE L1 5723 5837 -294 495 210 18 66 chr1 37652875 37653018 -244540646 + L1MB3 LINE L1 6005 6141 -42 2005 94 68 0 chr1 37653018 37653311 -244540353 - AluY SINE Alu 0 311 1 495 210 18 66 chr1 37653311 37653333 -244540331 + L1MB3 LINE L1 6141 6163 -20 869 162 0 22 chr1 37653333 37653469 -244540195 - FLAM_A SINE Alu 0 133 1 958 300 146 23 chr1 37653524 37654208 -244539456 - L2 LINE L2 -1060 2254 1487 579 266 25 101 chr1 37654246 37654562 -244539102 + MLT1I LTR MaLR 73 364 -45 945 299 118 66 chr1 37654576 37655476 -244538188 - L2 LINE L2 -453 2861 1898 2450 70 0 29 chr1 37655476 37655792 -244537872 - AluY SINE Alu -4 307 1 945 299 118 66 chr1 37655792 37655931 -244537733 - L2 LINE L2 -1416 1898 1768 1853 127 4 4 chr1 37656219 37656478 -244537186 + AluSx SINE Alu 51 309 -3 189 269 39 39 chr1 37656810 37656888 -244536776 + L2 LINE L2 3229 3306 -7 674 298 121 20 chr1 37657627 37657973 -244535691 + L2 LINE L2 2933 3313 0 194 301 151 82 chr1 37658499 37658718 -244534946 + L2 LINE L2 2692 2925 -389 1350 267 78 5 chr1 37658913 37659321 -244534343 + MLT1K LTR MaLR 151 588 0 234 232 122 37 chr1 37659404 37659486 -244534178 + L2 LINE L2 3184 3272 0 193 294 59 0 chr1 37659514 37659582 -244534082 + L2 LINE L2 3201 3272 0 1922 156 3 13 chr1 37661170 37661477 -244532187 - AluJb SINE Alu -8 304 1 347 289 66 36 chr1 37661903 37662069 -244531595 - MIR SINE MIR -72 190 20 288 53 0 0 chr1 37662751 37662789 -244530875 + (TG)n Simple_repeat Simple_repeat 2 39 0 268 279 99 9 chr1 37664065 37664176 -244529488 + L1MC/D LINE L1 5688 5808 -2000 934 273 8 30 chr1 37664209 37664476 -244529188 + MIR SINE MIR 1 261 -1 356 306 10 53 chr1 37666786 37666992 -244526672 - L2 LINE L2 -183 3089 2893 248 348 34 42 chr1 37667114 37667232 -244526432 + MIR SINE MIR 20 136 -126 402 314 180 35 chr1 37667352 37667785 -244525879 - L2 LINE L2 -581 2733 2238 326 355 134 28 chr1 37667962 37668179 -244525485 - L2 LINE L2 -18 3254 3015 201 74 0 0 chr1 37668182 37668209 -244525455 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1479 245 72 33 chr1 37668210 37668612 -244525052 - L2 LINE L2 -12 3301 2916 2190 116 0 41 chr1 37668612 37668930 -244524734 + AluSq SINE Alu 1 305 -8 1479 245 72 33 chr1 37668930 37669273 -244524391 - L2 LINE L2 -397 2916 2510 213 351 53 20 chr1 37669259 37669410 -244524254 - L2 LINE L2 -290 3023 2868 * 203 290 114 38 chr1 37669917 37670048 -244523616 - L2 LINE L2 -222 3050 2910 181 240 47 108 chr1 37670068 37670197 -244523467 - L2 LINE L2 -508 2806 2686 206 333 158 26 chr1 37670887 37671266 -244522398 + L2 LINE L2 2246 2674 -640 782 118 71 35 chr1 37671288 37671458 -244522206 - L1MA7 LINE L1 0 6291 6116 1397 103 20 43 chr1 37671458 37671523 -244522141 - L1MA4A LINE L1 -8 6295 6230 2554 140 59 5 chr1 37671523 37671929 -244521735 + MSTA LTR MaLR 1 428 0 1397 103 20 43 chr1 37671929 37672113 -244521551 - L1MA4A LINE L1 -73 6230 6049 419 200 137 0 chr1 37672113 37672208 -244521456 + MER1B DNA MER1_type 1 108 -189 * 889 81 16 8 chr1 37672195 37672319 -244521345 + MER1B DNA MER1_type 215 339 0 4515 127 6 55 chr1 37672319 37672584 -244521080 - L1MA4A LINE L1 -247 6056 5780 695 186 8 17 chr1 37672584 37672702 -244520962 - FLAM_A SINE Alu -16 117 1 4515 127 6 55 chr1 37672702 37673996 -244519668 - L1MA4A LINE L1 -523 5780 4566 824 307 121 25 chr1 37674004 37674583 -244519081 + L2 LINE L2 2666 3313 0 371 271 42 0 chr1 37674588 37674684 -244518980 - MIR SINE MIR -133 129 30 792 245 47 30 chr1 37675783 37676016 -244517648 - MIR SINE MIR -15 247 11 665 237 132 22 chr1 37676519 37676747 -244516917 + MIR SINE MIR 2 254 -8 944 263 23 27 chr1 37676775 37677034 -244516630 - MIR SINE MIR 0 262 5 1348 283 93 26 chr1 37677278 37677797 -244515867 + L2 LINE L2 2240 2723 -590 2036 114 0 0 chr1 37677797 37678059 -244515605 - AluSg SINE Alu -7 303 42 1348 283 93 26 chr1 37678059 37678530 -244515134 + L2 LINE L2 2723 3311 -2 180 226 0 75 chr1 37678531 37678584 -244515080 + L2 LINE L2 3265 3313 0 251 252 136 58 chr1 37678594 37678749 -244514915 - MIR SINE MIR -83 179 13 345 350 116 37 chr1 37680029 37680791 -244512873 - L2 LINE L2 -427 2887 2066 443 287 67 12 chr1 37682266 37682430 -244511234 + MER117 DNA MER1_type 25 197 0 247 283 20 30 chr1 37682645 37682744 -244510920 - L2 LINE L2 -1309 2005 1908 449 244 163 66 chr1 37682842 37683088 -244510576 + L1ME4a LINE L1 5839 6112 -9 1988 135 0 32 chr1 37683088 37683400 -244510264 + AluJo SINE Alu 11 312 0 449 244 163 66 chr1 37683400 37683411 -244510253 + L1ME4a LINE L1 6112 6121 0 218 105 26 0 chr1 37683412 37683450 -244510214 + GA-rich Low_complexity Low_complexity 1 39 0 523 241 18 0 chr1 37683475 37683587 -244510077 + MER81 DNA DNA 1 114 0 223 346 16 37 chr1 37683666 37683854 -244509810 - L2 LINE L2 -1635 1679 1496 815 288 17 30 chr1 37685311 37685544 -244508120 + MIR SINE MIR 11 240 -22 439 303 186 22 chr1 37685559 37685833 -244507831 - L2 LINE L2 -109 3163 2845 551 256 115 47 chr1 37686002 37686236 -244507428 + MIR SINE MIR 1 250 -12 286 219 68 0 chr1 37686267 37686340 -244507324 + L2 LINE L2 3205 3282 -31 229 196 39 0 chr1 37686396 37686447 -244507217 - L2 LINE L2 0 3313 3261 271 262 143 77 chr1 37688169 37688316 -244505348 + MIR SINE MIR 10 171 -91 2173 164 63 14 chr1 37688316 37688761 -244504903 - MLT1C LTR MaLR 0 467 1 271 262 143 77 chr1 37688761 37688781 -244504883 + MIR SINE MIR 171 188 -74 478 244 43 90 chr1 37688804 37689038 -244504626 - MIR SINE MIR -19 243 21 233 292 90 0 chr1 37689953 37690042 -244503622 - MIR SINE MIR 0 262 166 227 116 23 0 chr1 37690128 37690171 -244503493 + L2 LINE L2 1777 1820 -1494 26 74 0 0 chr1 37690180 37690234 -244503430 + AT_rich Low_complexity Low_complexity 1 54 0 485 303 7 26 chr1 37690294 37690449 -244503215 + L2 LINE L2 3162 3313 0 430 256 43 43 chr1 37690447 37690611 -244503053 - MIR SINE MIR -65 197 34 * 273 291 185 26 chr1 37690936 37691087 -244502577 - MER5B DNA MER1_type -2 176 2 215 306 137 33 chr1 37691278 37691461 -244502203 + L2 LINE L2 2587 2788 -526 220 270 165 26 chr1 37691662 37691777 -244501887 + L2 LINE L2 2932 3062 -210 239 307 107 60 chr1 37692092 37692242 -244501422 + L2 LINE L2 3115 3271 -1 27 0 0 0 chr1 37692256 37692283 -244501381 + AT_rich Low_complexity Low_complexity 1 27 0 288 0 0 0 chr1 37692290 37692322 -244501342 + (CA)n Simple_repeat Simple_repeat 2 33 0 725 241 157 5 chr1 37692339 37692530 -244501134 - MER58A DNA MER1_type -1 223 4 514 310 127 0 chr1 37693007 37693220 -244500444 - MIR SINE MIR -18 244 5 799 208 33 0 chr1 37693554 37693737 -244499927 - MER53 DNA DNA 0 189 1 325 230 126 15 chr1 37694416 37694551 -244499113 - MER103 DNA DNA -9 157 8 2212 99 0 51 chr1 37694981 37695295 -244498369 - AluSx SINE Alu -14 298 1 583 316 46 0 chr1 37696195 37696369 -244497295 - MIR SINE MIR -70 192 11 768 259 64 32 chr1 37697360 37697611 -244496053 + MIR SINE MIR 4 262 0 356 298 209 41 chr1 37698156 37698740 -244494924 + L2 LINE L2 2223 2904 -410 365 0 22 0 chr1 37698744 37698789 -244494875 + (GA)n Simple_repeat Simple_repeat 2 47 0 304 239 115 46 chr1 37700143 37700361 -244493303 + L2 LINE L2 2818 3050 -222 187 267 53 27 chr1 37700435 37700510 -244493154 - L2 LINE L2 -1132 2182 2106 695 282 25 86 chr1 37700712 37701036 -244492628 + L2 LINE L2 2899 3191 -122 312 70 0 0 chr1 37701036 37701079 -244492585 + (CA)n Simple_repeat Simple_repeat 2 44 0 695 282 25 86 chr1 37701079 37701194 -244492470 + L2 LINE L2 3191 3311 -2 186 167 0 0 chr1 37701198 37701234 -244492430 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 640 261 196 16 chr1 37701365 37701687 -244491977 + MLT1J2 LTR MaLR 2 381 -69 511 261 42 0 chr1 37702353 37702495 -244491169 + MIR SINE MIR 88 235 -27 460 235 46 65 chr1 37702492 37702645 -244491019 - MIR SINE MIR -63 199 50 * 2733 147 12 20 chr1 37702869 37703360 -244490304 + L1MB3 LINE L1 5695 6181 -2 498 279 89 47 chr1 37703864 37704054 -244489610 + MIR SINE MIR 20 217 -45 225 94 0 0 chr1 37704094 37704126 -244489538 + (CAT)n Simple_repeat Simple_repeat 2 33 0 476 101 79 0 chr1 37704451 37704540 -244489124 - L1MB3 LINE L1 0 6183 6088 346 20 41 0 chr1 37704540 37704581 -244489083 + L1PA6 LINE L1 6104 6154 0 1580 150 7 4 chr1 37704581 37704854 -244488810 - L1MB3 LINE L1 -80 6103 5830 1097 291 102 16 chr1 37704921 37705668 -244487996 + L2 LINE L2 2413 3308 -5 273 163 0 0 chr1 37706290 37706339 -244487325 + (TG)n Simple_repeat Simple_repeat 2 50 0 694 216 8 0 chr1 37706550 37706684 -244486980 + MIR SINE MIR 78 212 -50 1446 219 68 15 chr1 37706697 37707262 -244486402 + MLT1E1 LTR MaLR 1 654 0 258 278 122 11 chr1 37707634 37707724 -244485940 + L2 LINE L2 3148 3247 -25 486 290 152 40 chr1 37707743 37707855 -244485809 + L2 LINE L2 2740 2838 -475 502 220 18 9 chr1 37707855 37707964 -244485700 - MER81 DNA DNA -3 111 2 486 290 152 40 chr1 37707964 37708311 -244485353 + L2 LINE L2 2838 3254 -59 363 298 113 13 chr1 37708810 37708961 -244484703 - L2 LINE L2 -6 3266 3101 324 242 150 17 chr1 37709832 37709952 -244483712 + MIR SINE MIR 14 149 -113 1839 172 49 0 chr1 37709966 37710314 -244483350 + MSTB1 LTR MaLR 68 432 0 308 233 0 23 chr1 37710330 37710416 -244483248 + MIR SINE MIR 167 250 -12 1044 226 229 16 chr1 37710897 37711378 -244482286 + L2 LINE L2 2725 3313 0 602 216 32 0 chr1 37711605 37711730 -244481934 - MER5B DNA MER1_type -6 172 44 2122 214 24 50 chr1 37711791 37712409 -244481255 - L1ME1 LINE L1 -44 6122 5521 245 294 0 0 chr1 37712412 37712480 -244481184 - MER5B DNA MER1_type -110 68 1 854 222 108 19 chr1 37712521 37712733 -244480931 + MIR SINE MIR 13 243 -19 251 330 11 21 chr1 37712740 37712834 -244480830 + L2 LINE L2 3179 3271 -1 516 316 30 37 chr1 37713113 37713356 -244480308 + MIR SINE MIR 3 248 -14 711 241 47 6 chr1 37714027 37714197 -244479467 - MER45A DNA AcHobo -1 177 1 198 258 81 0 chr1 37714251 37714313 -244479351 - L2 LINE L2 -69 3203 3137 1441 248 115 14 chr1 37716669 37717182 -244476482 + MLT1E LTR MaLR 2 566 -27 181 363 44 0 chr1 37717422 37717513 -244476151 - L2 LINE L2 -1093 2221 2127 920 203 60 49 chr1 37717529 37717795 -244475869 + MER33 DNA MER1_type 54 322 -2 240 111 0 0 chr1 37717795 37717831 -244475833 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 776 298 34 4 chr1 37717847 37718082 -244475582 - MIR SINE MIR -13 249 8 180 111 0 0 chr1 37718096 37718123 -244475541 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2341 90 23 0 chr1 37718190 37718491 -244475173 + AluSp SINE Alu 1 308 -5 252 86 0 0 chr1 37718552 37718587 -244475077 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 342 307 19 14 chr1 37719118 37719242 -244474422 - MIR SINE MIR -84 124 3 678 204 79 7 chr1 37719256 37719408 -244474256 + MIR SINE MIR 88 250 -12 2443 175 64 25 chr1 37720711 37721197 -244472467 + MLT1D LTR MaLR 1 505 0 216 304 52 34 chr1 37721285 37721433 -244472231 - MIR SINE MIR -21 187 31 233 288 68 25 chr1 37721776 37721894 -244471770 - L2 LINE L2 0 3272 3150 212 337 67 0 chr1 37722745 37722834 -244470830 - L2 LINE L2 -32 3281 3187 445 256 29 36 chr1 37722837 37722974 -244470690 - MIR SINE MIR -62 200 65 349 250 250 0 chr1 37723675 37723791 -244469873 + L2 LINE L2 3169 3313 0 243 0 0 0 chr1 37723846 37723873 -244469791 + (CA)n Simple_repeat Simple_repeat 2 28 0 419 278 142 11 chr1 37725071 37725247 -244468417 + MIR SINE MIR 61 259 -3 802 279 48 0 chr1 37726356 37726585 -244467079 - MIR SINE MIR -7 255 16 571 292 128 44 chr1 37726691 37727074 -244466590 - L2 LINE L2 -1 3271 2857 915 222 19 49 chr1 37727159 37727393 -244466271 - MIR SINE MIR 0 262 34 209 180 49 0 chr1 37728044 37728105 -244465559 + (TG)n Simple_repeat Simple_repeat 1 64 0 709 212 12 5 chr1 37728121 37728291 -244465373 + MIR SINE MIR 5 262 0 272 258 34 34 chr1 37728547 37728636 -244465028 - MIR3 SINE MIR -3 205 117 196 345 0 0 chr1 37728754 37728812 -244464852 - MIR SINE MIR -116 92 35 394 311 273 19 chr1 37728988 37729358 -244464306 - L2 LINE L2 0 3313 2850 302 231 13 26 chr1 37729830 37729908 -244463756 - MIR SINE MIR -17 245 169 548 335 61 51 chr1 37729909 37730300 -244463364 - L2 LINE L2 -1 3271 2877 328 300 125 46 chr1 37730364 37730644 -244463020 - L2 LINE L2 -654 2660 2359 493 269 25 118 chr1 37730694 37730973 -244462691 + MIR SINE MIR 1 253 -9 222 304 68 42 chr1 37731022 37731213 -244462451 - L2 LINE L2 -273 2999 2804 237 215 77 0 chr1 37731513 37731578 -244462086 - L2 LINE L2 -648 2666 2597 2190 97 0 29 chr1 37732230 37732540 -244461124 + AluSx SINE Alu 1 301 -11 328 289 62 10 chr1 37732549 37732646 -244461018 + MER5A DNA MER1_type 74 175 -14 408 232 11 0 chr1 37732697 37732792 -244460872 - MER5A DNA MER1_type -80 109 14 1504 196 68 0 chr1 37732878 37733159 -244460505 + AluJo SINE Alu 3 302 -10 502 112 10 10 chr1 37733163 37733261 -244460403 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 374 272 0 22 chr1 37733904 37733996 -244459668 + MIR SINE MIR 34 123 -139 223 283 57 107 chr1 37734295 37734472 -244459192 + L2 LINE L2 3075 3242 -30 418 245 129 17 chr1 37734755 37734908 -244458756 - MIR SINE MIR -63 145 20 266 291 0 13 chr1 37735500 37735579 -244458085 + MIR SINE MIR 29 106 -156 616 292 94 9 chr1 37735638 37735871 -244457793 - MIR SINE MIR -6 256 4 333 311 79 57 chr1 37735926 37736241 -244457423 + L2 LINE L2 2174 2495 -819 312 204 23 68 chr1 37736462 37736550 -244457114 + L2 LINE L2 3230 3313 0 547 339 111 14 chr1 37736793 37737082 -244456582 + L2 LINE L2 2996 3312 -1 783 228 10 25 chr1 37737161 37737363 -244456301 + L1ME1 LINE L1 4894 5092 -1054 357 24 0 0 chr1 37737373 37737415 -244456249 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 70 0 0 chr1 37737427 37737470 -244456194 + AT_rich Low_complexity Low_complexity 1 43 0 3086 218 57 38 chr1 37737475 37738355 -244455309 + L1ME1 LINE L1 5266 6162 -4 1950 108 0 4 chr1 37738369 37738627 -244455037 + AluSq SINE Alu 36 292 -21 525 162 17 117 chr1 37739177 37739356 -244454308 - MER53 DNA DNA 0 189 29 1723 158 46 3 chr1 37739358 37739642 -244454022 - AluJo SINE Alu -6 306 11 215 180 160 0 chr1 37740060 37740110 -244453554 + MIR SINE MIR 87 144 -118 515 257 84 59 chr1 37740116 37740596 -244453068 + L1MC/D LINE L1 5188 5682 -488 1177 116 79 112 chr1 37740623 37740864 -244452800 - AluJb SINE Alu -79 233 1 672 204 0 59 chr1 37741149 37741301 -244452363 - L2 LINE L2 -1 3312 3170 1406 136 20 0 chr1 37741302 37741501 -244452163 + AluSg/x SINE Alu 97 299 -13 651 262 110 12 chr1 37741501 37741829 -244451835 - L2 LINE L2 -135 3178 2819 334 322 79 13 chr1 37741846 37741998 -244451666 - MIR3 SINE MIR -13 195 34 2016 114 29 3 chr1 37742047 37742363 -244451301 + L1MA2 LINE L1 5981 6304 0 379 279 57 77 chr1 37742738 37742985 -244450679 - L2 LINE L2 -46 3226 2985 2433 57 0 22 chr1 37743023 37743340 -244450324 + AluY SINE Alu 1 310 -1 642 248 89 25 chr1 37743378 37743580 -244450084 + MIR SINE MIR 47 261 -1 239 239 15 85 chr1 37743634 37743764 -244449900 - L2 LINE L2 -228 3044 2924 661 325 31 31 chr1 37743894 37744180 -244449484 - L2 LINE L2 -556 2758 2473 668 192 45 45 chr1 37745063 37745219 -244448445 - L2 LINE L2 0 3313 3158 260 281 21 52 chr1 37745359 37745455 -244448209 - L3 LINE CR1 -932 645 553 241 348 22 72 chr1 37745552 37745734 -244447930 + MIR SINE MIR 20 191 -63 339 229 58 8 chr1 37746037 37746171 -244447493 - L1ME4a LINE L1 -14 6097 1196 693 257 165 15 chr1 37746214 37746475 -244447189 - L1ME LINE L1 -338 5783 5484 343 337 88 6 chr1 37747857 37748038 -244445626 + MER117 DNA MER1_type 2 197 0 368 317 176 40 chr1 37749587 37749940 -244443724 - MLT1K LTR MaLR -30 558 158 270 268 14 0 chr1 37750377 37750448 -244443216 + MIR SINE MIR 191 262 0 200 204 23 0 chr1 37750781 37750825 -244442839 + GA-rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr1 37751091 37751114 -244442550 + AT_rich Low_complexity Low_complexity 1 23 0 2268 78 0 29 chr1 37751324 37751633 -244442031 + AluY SINE Alu 1 300 -11 287 181 14 0 chr1 37751788 37751860 -244441804 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 24 53 0 0 chr1 37752025 37752063 -244441601 + AT_rich Low_complexity Low_complexity 1 38 0 206 315 74 39 chr1 37752790 37752993 -244440671 - L2 LINE L2 -622 2692 2483 399 370 0 8 chr1 37753233 37753360 -244440304 + L2 LINE L2 3134 3259 -13 2193 112 0 0 chr1 37753524 37753829 -244439835 + AluSc SINE Alu 3 307 -2 432 192 31 79 chr1 37754718 37754948 -244438716 + L1ME LINE L1 5201 5421 -743 250 248 9 9 chr1 37755489 37755594 -244438070 + GA-rich Low_complexity Low_complexity 3 107 0 378 286 286 0 chr1 37755621 37755824 -244437840 - MIR SINE MIR 0 262 2 2322 142 25 63 chr1 37756713 37757156 -244436508 + MSTC LTR MaLR 1 426 -2 820 213 29 11 chr1 37757424 37757598 -244436066 - MER45A DNA AcHobo -1 177 1 1582 178 13 20 chr1 37758123 37758427 -244435237 - AluJo SINE Alu -5 307 6 217 218 39 90 chr1 37758436 37758514 -244435150 + MIR SINE MIR 76 149 -113 350 312 16 70 chr1 37758517 37758703 -244434961 + L1MC4a LINE L1 5678 5853 -1955 646 222 0 11 chr1 37759649 37759829 -244433835 + GA-rich Low_complexity Low_complexity 3 180 0 395 296 128 21 chr1 37759882 37760210 -244433454 + HAL1b LINE L1 54 416 -932 1513 273 85 35 chr1 37760256 37761058 -244432606 + HAL1b LINE L1 506 1347 -1 347 264 104 49 chr1 37761173 37761317 -244432347 + MIR SINE MIR 104 255 -7 23 0 0 0 chr1 37761572 37761595 -244432069 + AT_rich Low_complexity Low_complexity 1 23 0 200 204 23 0 chr1 37761861 37761905 -244431759 + CT-rich Low_complexity Low_complexity 1 45 0 270 268 14 0 chr1 37762238 37762309 -244431355 - MIR SINE MIR 0 262 191 368 317 176 40 chr1 37762746 37763099 -244430565 + MLT1K LTR MaLR 158 558 -30 341 343 88 6 chr1 37764644 37764825 -244428839 - MER117 DNA MER1_type 0 197 2 693 257 165 15 chr1 37766207 37766468 -244427196 + L1ME LINE L1 5484 5783 -338 339 229 58 8 chr1 37766511 37766645 -244427019 + L1ME4a LINE L1 1196 6097 -14 260 343 22 72 chr1 37766948 37767130 -244426534 - MIR SINE MIR -63 145 20 260 281 21 52 chr1 37767227 37767323 -244426341 + L3 LINE CR1 553 645 -932 668 192 45 45 chr1 37767463 37767619 -244426045 + L2 LINE L2 3158 3313 0 654 349 40 30 chr1 37768502 37768872 -244424792 + L2 LINE L2 2473 2846 -468 239 239 15 85 chr1 37768918 37769048 -244424616 + L2 LINE L2 2924 3044 -228 642 248 89 25 chr1 37769102 37769304 -244424360 - MIR SINE MIR -1 261 47 2433 57 0 22 chr1 37769342 37769659 -244424005 - AluY SINE Alu -1 310 1 379 279 57 77 chr1 37769697 37769944 -244423720 + L2 LINE L2 2985 3226 -46 2016 114 29 3 chr1 37770319 37770635 -244423029 - L1MA2 LINE L1 0 6304 5981 330 322 79 13 chr1 37770684 37770836 -244422828 + MIR3 SINE MIR 34 195 -13 629 262 110 12 chr1 37770853 37771181 -244422483 + L2 LINE L2 2819 3178 -135 1304 136 20 0 chr1 37771181 37771380 -244422284 - AluSg/x SINE Alu -13 299 97 679 204 0 59 chr1 37771381 37771533 -244422131 + L2 LINE L2 3170 3312 -1 187 250 92 26 chr1 37772179 37772255 -244421409 - L2 LINE L2 0 3272 3192 1977 295 103 14 chr1 37772499 37773434 -244420230 + L2 LINE L2 2154 3181 -91 268 232 222 20 chr1 37774029 37774128 -244419536 - MIR SINE MIR -114 148 30 205 352 0 0 chr1 37774516 37774587 -244419077 - L3 LINE CR1 -1 1576 1506 330 26 0 0 chr1 37774748 37774787 -244418877 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 85 0 0 chr1 37774805 37774864 -244418800 + AT_rich Low_complexity Low_complexity 1 59 0 2950 60 5 5 chr1 37774878 37775261 -244418403 - L1PA8 LINE L1 -8 6164 5782 1737 39 0 0 chr1 37775261 37775466 -244418198 + L1PA8 LINE L1 5571 5775 -397 21 0 0 0 chr1 37775467 37775488 -244418176 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr1 37775522 37775547 -244418117 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 640 226 14 0 chr1 37775660 37775806 -244417858 + MER104 DNA Tc2 29 176 -4 552 291 92 31 chr1 37775838 37776099 -244417565 - L3 LINE CR1 -83 1494 1218 1642 179 28 10 chr1 37776209 37776500 -244417164 + AluJo SINE Alu 1 296 -16 1243 283 81 21 chr1 37776771 37777467 -244416197 - L1ME4a LINE L1 -76 6045 5308 1084 195 70 0 chr1 37777723 37777938 -244415726 + MIR SINE MIR 33 262 0 212 318 45 23 chr1 37777916 37778048 -244415616 - L3 LINE CR1 -794 783 649 * 399 266 106 35 chr1 37778410 37778636 -244415028 + L2 LINE L2 2699 2940 -374 925 260 146 41 chr1 37778638 37779000 -244414664 - L2 LINE L2 -1 3312 2913 478 346 77 13 chr1 37779354 37779588 -244414076 + MIR SINE MIR 8 256 -6 999 182 0 6 chr1 37780602 37780783 -244412881 + MER104 DNA MER2_type 1 180 0 314 258 0 0 chr1 37780855 37780917 -244412747 - L2 LINE L2 0 3313 3252 658 277 89 30 chr1 37780951 37781186 -244412478 - MIR SINE MIR -12 250 2 1020 61 0 0 chr1 37781564 37781695 -244411969 - AluY SINE Alu -179 132 2 1388 117 80 0 chr1 37781710 37781949 -244411715 - Tigger3(Golem) DNA MER2_type -285 2744 2487 1874 121 0 8 chr1 37781965 37782230 -244411434 - AluSq SINE Alu -50 263 1 242 131 66 0 chr1 37782275 37782336 -244411328 - L1MA9 LINE L1 -13 6299 6235 425 156 0 0 chr1 37783477 37783541 -244410123 + AluJ/FLAM SINE Alu 3 66 -246 1648 184 0 14 chr1 37783701 37783995 -244409669 - AluJb SINE Alu -19 293 4 180 323 20 50 chr1 37784357 37784456 -244409208 - L2 LINE L2 -21 3251 3156 370 362 82 5 chr1 37784543 37784739 -244408925 - MIR SINE MIR -14 248 38 509 340 52 0 chr1 37784799 37784990 -244408674 - MIR SINE MIR -43 219 19 335 292 52 0 chr1 37785017 37785113 -244408551 + L2 LINE L2 3159 3259 -13 185 0 40 0 chr1 37785113 37785138 -244408526 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 199 238 0 0 chr1 37786259 37786301 -244407363 + L2 LINE L2 3271 3312 -1 205 256 0 0 chr1 37786423 37786466 -244407198 + (TG)n Simple_repeat Simple_repeat 2 44 0 834 290 24 28 chr1 37786899 37787154 -244406510 - MIR SINE MIR -5 257 4 746 293 138 41 chr1 37788008 37788500 -244405164 + L1ME LINE L1 5258 5797 -324 315 196 0 0 chr1 37788825 37788881 -244404783 + MER53 DNA DNA 1 56 -133 1626 174 16 7 chr1 37788881 37789185 -244404479 + AluJb SINE Alu 1 307 -5 273 158 50 129 chr1 37789190 37789291 -244404373 + MER53 DNA DNA 97 189 0 448 248 135 8 chr1 37789496 37789629 -244404035 + MIR SINE MIR 106 255 -7 248 184 20 0 chr1 37790179 37790228 -244403436 - MIR SINE MIR -140 122 73 1216 184 10 0 chr1 37790904 37791111 -244402553 + MER3 DNA MER1_type 1 209 0 1061 168 30 25 chr1 37791119 37791322 -244402342 - MER58A DNA MER1_type 0 224 21 1672 143 92 0 chr1 37791934 37792207 -244401457 - AluSx SINE Alu -14 298 1 207 0 0 0 chr1 37792610 37792633 -244401031 + (A)n Simple_repeat Simple_repeat 1 23 0 204 327 0 0 chr1 37793602 37793657 -244400007 - L2 LINE L2 -7 3265 3211 583 222 97 36 chr1 37794085 37794333 -244399331 - HAL1b LINE L1 -125 1223 961 439 290 51 99 chr1 37795277 37795570 -244398094 + MLT1K LTR MaLR 310 588 0 439 301 112 25 chr1 37795591 37795787 -244397877 + L1M4 LINE L1 5122 5334 -812 2553 236 28 31 chr1 37795888 37796668 -244396996 + L1MD2 LINE L1 3313 4090 -2056 4248 197 102 20 chr1 37796670 37797636 -244396028 + L1MD2 LINE L1 5305 6350 -9 1112 241 48 16 chr1 37797643 37797958 -244395706 + LTR47B LTR ERVL 34 358 -85 258 182 0 0 chr1 37797981 37798025 -244395639 + Charlie5 DNA MER1_type 2540 2583 -29 275 333 40 16 chr1 37799402 37799528 -244394136 + L2 LINE L2 2722 2850 -464 694 179 86 19 chr1 37799562 37799724 -244393940 + MER97b DNA MER1_type? 7 179 -874 220 333 83 49 chr1 37799731 37799935 -244393729 + L2 LINE L2 2852 3062 -251 913 291 62 31 chr1 37799971 37800328 -244393336 + MLT1I LTR MaLR 7 378 -31 1924 189 94 70 chr1 37800328 37800715 -244392949 - MER74A LTR ERVL 0 558 153 1569 144 0 109 chr1 37800715 37801063 -244392601 + AluJb SINE Alu 1 310 -2 1924 189 94 70 chr1 37801063 37801220 -244392444 - MER74A LTR ERVL -405 153 1 913 291 62 31 chr1 37801220 37801251 -244392413 + MLT1I LTR MaLR 378 407 -2 199 257 40 95 chr1 37801259 37801407 -244392257 + L2 LINE L2 3112 3251 -62 1793 173 0 0 chr1 37801688 37801983 -244391681 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr1 37801989 37802011 -244391653 + AT_rich Low_complexity Low_complexity 1 22 0 234 321 82 37 chr1 37802503 37802746 -244390918 + L3 LINE CR1 1167 1420 -157 190 261 34 11 chr1 37803555 37803643 -244390021 + L2 LINE L2 2802 2891 -423 1901 104 10 14 chr1 37803645 37803933 -244389731 - AluY SINE Alu -24 287 1 906 93 0 0 chr1 37803936 37804054 -244389610 - AluY SINE Alu -179 132 15 310 327 32 121 chr1 37804054 37804427 -244389237 + L2 LINE L2 2883 3222 -50 2675 199 47 9 chr1 37804470 37805007 -244388657 + MER68 LTR ERV1 6 562 0 228 204 0 0 chr1 37805086 37805130 -244388534 + MER103 DNA DNA 2 45 -121 353 22 22 0 chr1 37805873 37805919 -244387745 + (CA)n Simple_repeat Simple_repeat 1 47 0 2491 210 57 18 chr1 37806780 37807341 -244386323 + MER119 DNA MER1_type 1 583 0 300 331 58 8 chr1 37807572 37807693 -244385971 - L2 LINE L2 -2 3311 3185 1504 230 40 50 chr1 37807695 37808474 -244385190 + L2 LINE L2 2521 3282 -31 190 195 24 0 chr1 37810590 37810631 -244383033 + L2 LINE L2 3104 3145 -168 1385 191 81 45 chr1 37810644 37811001 -244382663 + MLT1A2 LTR MaLR 5 374 0 4423 156 7 4 chr1 37811020 37811713 -244381951 + ERVL-B1 LTR ERVL 4286 4980 -784 4261 140 72 78 chr1 37811752 37812639 -244381025 + ERVL-B1 LTR ERVL 4876 5757 -7 1198 184 82 48 chr1 37812639 37812999 -244380665 + MLT2B1 LTR ERVL 1 357 -57 308 24 0 24 chr1 37813009 37813051 -244380613 + (CA)n Simple_repeat Simple_repeat 2 42 0 238 209 0 0 chr1 37813056 37813099 -244380565 - MER2 DNA MER2_type -23 322 280 39 0 0 0 chr1 37813099 37813138 -244380526 + AT_rich Low_complexity Low_complexity 1 39 0 1001 172 26 21 chr1 37813138 37813330 -244380334 - MER2 DNA MER2_type -135 210 18 315 0 0 0 chr1 37813336 37813371 -244380293 + (TG)n Simple_repeat Simple_repeat 2 36 0 313 129 0 32 chr1 37813397 37813459 -244380205 + MLT2B1 LTR ERVL 461 520 0 558 221 0 93 chr1 37813463 37813635 -244380029 + L2 LINE L2 3158 3313 0 300 328 94 29 chr1 37813651 37813895 -244379769 - L2 LINE L2 -1308 2006 1747 514 286 203 9 chr1 37814566 37814793 -244378871 + L3 LINE CR1 366 636 -941 1440 191 7 5 chr1 37814805 37815099 -244378565 - L1MD3 LINE L1 0 7995 7523 2124 55 0 71 chr1 37815280 37815591 -244378073 + AluY SINE Alu 1 289 -22 4660 197 20 15 chr1 37816047 37816895 -244376769 - MER21B LTR ERV1 -11 852 1 526 297 82 58 chr1 37816943 37817273 -244376391 + L2 LINE L2 2921 3258 -14 875 265 56 20 chr1 37817282 37817531 -244376133 + MIR SINE MIR 2 259 -3 993 279 29 10 chr1 37817573 37817881 -244375783 - LTR16C LTR ERVL -9 482 169 731 282 21 0 chr1 37819034 37819222 -244374442 + MIR SINE MIR 53 244 -18 207 0 0 0 chr1 37819223 37819246 -244374418 + (ATG)n Simple_repeat Simple_repeat 2 24 0 242 284 236 39 chr1 37820138 37820448 -244373216 + L2 LINE L2 2887 3257 -56 196 211 0 0 chr1 37820508 37820546 -244373118 + L2 LINE L2 3221 3258 -14 291 93 0 0 chr1 37820548 37820591 -244373073 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 246 250 39 29 chr1 37821145 37821249 -244372415 + L1ME4a LINE L1 5995 6099 -22 203 161 0 0 chr1 37821487 37821518 -244372146 + T-rich Low_complexity Low_complexity 5 35 0 533 226 110 18 chr1 37821931 37822095 -244371569 + MER20 DNA MER1_type 37 215 -4 340 157 96 12 chr1 37822210 37822293 -244371371 - THE1-int LTR MaLR -824 756 667 853 209 143 33 chr1 37822349 37822559 -244371105 + MIR SINE MIR 28 260 -2 2606 91 8 3 chr1 37823687 37824040 -244369624 - THE1A LTR MaLR 0 355 1 11216 96 28 7 chr1 37824040 37825587 -244368077 - THE1A-int LTR MaLR 0 1580 1 2484 115 3 8 chr1 37825587 37825944 -244367720 - THE1A LTR MaLR 0 355 1 703 288 71 4 chr1 37826350 37826576 -244367088 + MIR SINE MIR 9 249 -13 495 250 116 51 chr1 37826802 37827018 -244366646 + MIR SINE MIR 1 230 -32 287 233 50 0 chr1 37828395 37828455 -244365209 + MER5A DNA MER1_type 18 80 -109 427 290 71 7 chr1 37828992 37829147 -244364517 - L3 LINE CR1 -321 1256 1092 458 230 151 56 chr1 37829216 37829468 -244364196 - L1ME4a LINE L1 -6 6115 5840 2229 101 58 23 chr1 37829524 37829870 -244363794 + THE1B LTR MaLR 5 362 -2 378 301 9 9 chr1 37830069 37830182 -244363482 - L2 LINE L2 0 3272 3160 341 255 100 26 chr1 37830292 37830430 -244363234 - MIR SINE MIR -38 170 18 261 267 56 11 chr1 37831317 37831407 -244362257 + MIR SINE MIR 106 199 -63 704 198 213 92 chr1 37832251 37832589 -244361075 - MLT1J1 LTR MaLR -67 379 1 595 265 22 27 chr1 37832735 37832920 -244360744 - MIR3 SINE MIR -2 206 23 437 122 95 0 chr1 37832925 37832999 -244360665 + HERV9 LTR ERV1 4179 4259 -4140 263 225 127 0 chr1 37834287 37834358 -244359306 + L1ME4a LINE L1 5945 6024 -97 2749 138 19 0 chr1 37834617 37835037 -244358627 - MSTA LTR MaLR 0 428 1 182 214 71 43 chr1 37835077 37835147 -244358517 + MIR SINE MIR 132 203 -59 623 301 44 82 chr1 37835415 37835567 -244358097 - L2 LINE L2 0 3272 3116 180 0 0 0 chr1 37835567 37835587 -244358077 + (CA)n Simple_repeat Simple_repeat 2 21 0 623 301 44 82 chr1 37835587 37835800 -244357864 - L2 LINE L2 -156 3116 2921 285 236 195 49 chr1 37835831 37835954 -244357710 + L2 LINE L2 3169 3309 -4 193 275 0 0 chr1 37835975 37836015 -244357649 + L2 LINE L2 3210 3249 -23 334 280 93 9 chr1 37837076 37837183 -244356481 - MIR SINE MIR -116 146 31 1166 197 0 18 chr1 37837210 37837433 -244356231 - MER20 DNA MER1_type 0 219 1 314 292 93 25 chr1 37837540 37837701 -244355963 - MIR SINE MIR -50 212 41 261 0 0 0 chr1 37837770 37837799 -244355865 + (TA)n Simple_repeat Simple_repeat 1 29 0 2301 59 0 0 chr1 37838033 37838320 -244355344 + AluY SINE Alu 17 303 -8 2220 58 0 4 chr1 37838330 37838606 -244355058 + AluY SINE Alu 35 309 -2 757 218 24 6 chr1 37838614 37838784 -244354880 + L1PB4 LINE L1 5981 6153 -3 725 206 0 22 chr1 37838842 37838978 -244354686 - FLAM_A SINE Alu 0 133 1 200 163 23 23 chr1 37839124 37839167 -244354497 + (CATA)n Simple_repeat Simple_repeat 2 44 0 338 274 135 8 chr1 37839391 37839516 -244354148 - MIR SINE MIR -61 147 45 1518 181 139 16 chr1 37839963 37840338 -244353326 + L1M4 LINE L1 4000 4420 -1726 1618 285 140 60 chr1 37840623 37841763 -244351901 + L1MCa LINE L1 2304 3581 -2845 504 0 0 0 chr1 37841763 37841819 -244351845 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 1618 285 140 60 chr1 37841819 37842051 -244351613 + L1MCa LINE L1 3581 3793 -2633 8421 55 18 202 chr1 37842235 37843933 -244349731 + SVA Other Other 1 1386 0 259 330 113 5 chr1 37843945 37844130 -244349534 - L2 LINE L2 -1498 1816 1612 461 285 58 29 chr1 37844332 37844475 -244349189 + MIR SINE MIR 47 199 -63 1463 192 0 11 chr1 37844475 37844735 -244348929 + AluJb SINE Alu 1 257 -55 461 285 58 29 chr1 37844735 37844798 -244348866 + MIR SINE MIR 199 259 -3 7669 29 0 2 chr1 37845175 37846255 -244347409 + L1PA4 LINE L1 5093 6155 0 189 107 0 0 chr1 37846862 37846890 -244346774 + (A)n Simple_repeat Simple_repeat 1 28 0 1270 266 120 30 chr1 37847132 37847797 -244345867 + L2 LINE L2 2169 2893 -421 746 207 116 74 chr1 37847970 37848127 -244345537 + L2 LINE L2 2934 3083 -230 2705 43 9 0 chr1 37848127 37848500 -244345164 + L1PA7 LINE L1 5807 6182 0 746 207 116 74 chr1 37848500 37848704 -244344960 + L2 LINE L2 3083 3311 -2 208 255 61 51 chr1 37850190 37850288 -244343376 - MIR SINE MIR -5 257 159 342 326 134 13 chr1 37850383 37850978 -244342686 + L2 LINE L2 1339 2005 -1309 262 271 187 13 chr1 37850994 37851149 -244342515 - MER5A DNA MER1_type -7 182 1 314 250 187 55 chr1 37851478 37851858 -244341806 + L2 LINE L2 2543 2972 -342 230 328 16 41 chr1 37852010 37852132 -244341532 + L2 LINE L2 3180 3298 -15 731 268 75 13 chr1 37852139 37852367 -244341297 - MIR SINE MIR -13 249 8 598 294 111 45 chr1 37852487 37853225 -244340439 + L1M4 LINE L1 3873 4659 -1487 43923 31 21 1 chr1 37853237 37859302 -244334362 + L1PA3 LINE L1 1 6155 0 276 305 0 30 chr1 37859533 37859697 -244333967 + L1M4 LINE L1 4915 5073 -1073 206 241 342 0 chr1 37860636 37860715 -244332949 + L2 LINE L2 3208 3313 0 272 246 251 23 chr1 37860830 37861001 -244332663 - L1ME4a LINE L1 -32 6089 5880 673 261 34 14 chr1 37861214 37861454 -244332210 - L1MC4a LINE L1 -356 5946 5695 599 251 11 17 chr1 37861442 37861617 -244332047 - L1ME4a LINE L1 -241 5880 5707 * 582 331 38 26 chr1 37862211 37862558 -244331106 - L1ME4a LINE L1 -457 5664 5314 2435 75 0 0 chr1 37862879 37863172 -244330492 - AluY SINE Alu -18 293 1 437 276 15 0 chr1 37863274 37863408 -244330256 + L2 LINE L2 2748 2883 -431 666 297 106 11 chr1 37863543 37863893 -244329771 + L2 LINE L2 2931 3313 0 2352 88 10 0 chr1 37864132 37864437 -244329227 - AluY SINE Alu -3 308 1 284 247 49 0 chr1 37864447 37864528 -244329136 + L2 LINE L2 3188 3272 0 461 126 0 81 chr1 37864553 37864640 -244329024 - MADE1 DNA Mariner 0 80 1 513 259 109 43 chr1 37864696 37864922 -244328742 + MIR SINE MIR 8 240 -22 448 321 21 8 chr1 37864972 37865212 -244328452 - L1ME4a LINE L1 -1711 4435 4193 381 278 8 15 chr1 37865282 37865415 -244328249 - L2 LINE L2 -955 2359 2228 181 228 123 61 chr1 37865767 37865881 -244327783 + L2 LINE L2 2950 3070 -202 1374 124 48 0 chr1 37866037 37866246 -244327418 - MER20 DNA MER1_type 0 219 1 1786 188 100 11 chr1 37866395 37866847 -244326817 - Charlie4a DNA MER1_type -2 506 15 232 250 0 0 chr1 37866977 37867029 -244326635 - L2 LINE L2 -88 3184 3133 331 301 17 9 chr1 37867228 37867368 -244326296 - MIR3 SINE MIR -52 156 16 1084 241 20 4 chr1 37868201 37868454 -244325210 - MIR SINE MIR 0 262 6 215 125 25 0 chr1 37868461 37868501 -244325163 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 285 322 136 0 chr1 37868790 37868908 -244324756 + L2 LINE L2 3180 3313 0 240 367 18 0 chr1 37869159 37869268 -244324396 + MIR SINE MIR 36 146 -62 378 242 81 0 chr1 37870290 37870389 -244323275 - L1P LINE L1 -1038 5108 5002 5650 109 5 65 chr1 37870390 37870600 -244323064 + L1PA13 LINE L1 5159 5380 -800 2540 59 0 10 chr1 37870600 37870904 -244322760 + AluSg SINE Alu 1 301 -9 5650 109 5 65 chr1 37870904 37871772 -244321892 + L1PA13 LINE L1 5380 6180 0 713 216 22 78 chr1 37871805 37872037 -244321627 + L2 LINE L2 3094 3312 -1 255 271 37 37 chr1 37872224 37872331 -244321333 + L2 LINE L2 3145 3251 -21 491 272 69 39 chr1 37872352 37872584 -244321080 - MIR SINE MIR -6 256 18 462 36 0 0 chr1 37872824 37872880 -244320784 + (TC)n Simple_repeat Simple_repeat 1 56 0 715 79 0 0 chr1 37873791 37873880 -244319784 + 5S rRNA rRNA 2 90 -31 950 245 47 81 chr1 37874474 37874882 -244318782 + L1MB2 LINE L1 413 806 -5497 12821 209 37 45 chr1 37875060 37875136 -244318528 + L1MB2 LINE L1 804 879 -5528 234 0 0 0 chr1 37875136 37875162 -244318502 + (TTG)n Simple_repeat Simple_repeat 2 27 0 12821 209 37 45 chr1 37875162 37875257 -244318407 + L1MB2 LINE L1 879 973 -5434 1561 179 28 28 chr1 37875257 37875548 -244318116 + AluJo SINE Alu 1 291 -21 12821 209 37 45 chr1 37875548 37878770 -244314894 + L1MB2 LINE L1 973 4156 -2251 2112 131 0 16 chr1 37878770 37879075 -244314589 + AluSx SINE Alu 1 300 -12 12821 209 37 45 chr1 37879075 37881310 -244312354 + L1MB2 LINE L1 4156 6406 -1 2371 92 0 0 chr1 37881392 37881686 -244311978 - AluSq SINE Alu -19 294 1 540 279 29 25 chr1 37881780 37881984 -244311680 + L2 LINE L2 3107 3311 -2 403 157 10 5 chr1 37882349 37882455 -244311209 - MER5A DNA MER1_type 0 189 37 274 260 150 10 chr1 37882477 37882577 -244311087 + MER5B DNA MER1_type 4 117 -61 904 214 73 10 chr1 37882923 37883129 -244310535 + MER20 DNA MER1_type 1 219 0 278 254 114 9 chr1 37883753 37883867 -244309797 - MIR SINE MIR -19 243 118 3665 160 46 54 chr1 37883881 37884694 -244308970 + MER21B LTR ERV1 22 931 0 471 277 0 0 chr1 37884697 37884809 -244308855 - MIR SINE MIR -150 112 1 221 302 16 0 chr1 37884889 37884952 -244308712 - MIR SINE MIR -150 112 49 267 103 0 0 chr1 37885010 37885049 -244308615 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 333 361 8 0 chr1 37885982 37886115 -244307549 - L2 LINE L2 -215 3057 2924 405 0 0 0 chr1 37886349 37886394 -244307270 + (TG)n Simple_repeat Simple_repeat 2 46 0 593 231 113 0 chr1 37886933 37887093 -244306571 + LTR16C LTR ERVL 314 491 0 333 258 26 46 chr1 37887603 37887814 -244305850 + (CAGAGA)n Simple_repeat Simple_repeat 1 206 0 291 276 12 31 chr1 37887777 37887940 -244305724 + (CAGA)n Simple_repeat Simple_repeat 4 163 0 * 2434 60 0 3 chr1 37890211 37890525 -244303139 + AluY SINE Alu 1 313 0 564 259 11 38 chr1 37890662 37890847 -244302817 + MIR SINE MIR 23 202 -60 347 264 215 74 chr1 37890921 37891533 -244302131 - L2 LINE L2 -1 3312 2587 185 158 0 53 chr1 37891829 37891867 -244301797 + L2 LINE L2 3271 3306 -7 438 245 125 8 chr1 37891960 37892170 -244301494 - MIR SINE MIR -10 252 15 2890 170 41 33 chr1 37893320 37893781 -244299883 + MLT2B2 LTR ERVL 1 468 -47 201 39 0 0 chr1 37893781 37893807 -244299857 + (CA)n Simple_repeat Simple_repeat 2 27 0 2890 170 41 33 chr1 37893807 37893856 -244299808 + MLT2B2 LTR ERVL 468 515 0 294 330 78 0 chr1 37893868 37893971 -244299693 - L2 LINE L2 0 3272 3162 2143 128 3 0 chr1 37894190 37894486 -244299178 + AluSx SINE Alu 1 297 -15 2175 91 56 3 chr1 37894630 37894916 -244298748 + AluSc SINE Alu 1 301 -8 433 292 63 36 chr1 37895364 37895745 -244297919 + L1P5 LINE L1 5088 5482 -674 659 135 38 173 chr1 37895765 37895950 -244297714 + MER5A DNA MER1_type 17 176 -13 366 336 129 18 chr1 37896017 37896082 -244297582 + L1MC4a LINE L1 5599 5655 -2153 342 0 0 0 chr1 37896082 37896120 -244297544 + (CA)n Simple_repeat Simple_repeat 1 38 0 366 336 129 18 chr1 37896120 37896190 -244297474 + L1MC4a LINE L1 5655 5716 -2092 2314 77 3 0 chr1 37896190 37896477 -244297187 + AluSc SINE Alu 19 306 -3 366 336 129 18 chr1 37896477 37896620 -244297044 + L1MC4a LINE L1 5716 5909 -1899 243 219 0 39 chr1 37897742 37897897 -244295767 + (TCCA)n Simple_repeat Simple_repeat 3 151 0 256 127 51 25 chr1 37897952 37898031 -244295633 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 532 306 88 4 chr1 37898563 37898789 -244294875 - MIR SINE MIR -6 256 7 189 74 0 0 chr1 37899652 37899679 -244293985 + (TG)n Simple_repeat Simple_repeat 1 27 0 441 271 85 0 chr1 37900688 37900806 -244292858 - MIR SINE MIR -73 189 62 183 226 0 38 chr1 37901129 37901182 -244292482 + MIR SINE MIR 56 106 -102 737 304 100 40 chr1 37901206 37901657 -244292007 + MLT1K LTR MaLR 4 481 -107 601 212 153 6 chr1 37901894 37902065 -244291599 - L1MB8 LINE L1 -1 6177 5978 22 35 0 0 chr1 37902086 37902115 -244291549 + AT_rich Low_complexity Low_complexity 1 29 0 2913 82 2 17 chr1 37902120 37902522 -244291142 - L1PA8A LINE L1 -27 6104 5709 2505 209 32 47 chr1 37902522 37902647 -244291017 - L1ME1 LINE L1 -196 6039 5914 3039 87 5 0 chr1 37902647 37903048 -244290616 + L1PA13 LINE L1 5757 6159 -4 2505 209 32 47 chr1 37903048 37903581 -244290083 - L1ME1 LINE L1 -321 5914 5391 293 194 30 0 chr1 37903579 37903646 -244290018 + L1M4 LINE L1 4934 5002 -1144 * 2155 237 52 10 chr1 37903644 37903675 -244289989 - L1ME1 LINE L1 -1206 5009 4981 500 0 0 16 chr1 37903675 37903736 -244289928 + (TTA)n Simple_repeat Simple_repeat 1 60 0 2155 237 52 10 chr1 37903736 37904324 -244289340 - L1ME1 LINE L1 -1234 4981 4356 2204 186 45 21 chr1 37904324 37904744 -244288920 + MSTB1 LTR MaLR 3 432 0 2155 237 52 10 chr1 37904744 37904814 -244288850 - L1ME1 LINE L1 -1859 4356 4290 1481 173 4 11 chr1 37904829 37905101 -244288563 - L1P LINE L1 -1344 4802 4533 4662 259 77 36 chr1 37905101 37905611 -244288053 - L1ME1 LINE L1 -2562 3653 3165 2494 83 0 3 chr1 37905611 37905923 -244287741 - AluY SINE Alu 0 311 1 4662 259 77 36 chr1 37905923 37906283 -244287381 - L1ME1 LINE L1 -3050 3165 2821 2302 62 0 0 chr1 37906283 37906555 -244287109 + L1PA4 LINE L1 5884 6155 0 4662 259 77 36 chr1 37906555 37909191 -244284473 - L1ME1 LINE L1 -3394 2821 34 349 290 99 30 chr1 37909199 37909373 -244284291 - MLT1J LTR MaLR -268 199 31 2551 189 2 21 chr1 37909491 37909925 -244283739 - MSTB LTR MaLR 0 426 1 339 270 0 30 chr1 37910252 37910352 -244283312 + L2 LINE L2 3214 3310 -3 2131 284 123 14 chr1 37910572 37911418 -244282246 + L2 LINE L2 1706 2643 -671 1904 151 33 101 chr1 37911432 37911465 -244282199 - L1MA7 LINE L1 -4 6287 6253 1417 199 115 13 chr1 37911465 37911777 -244281887 - MER2 DNA MER2_type 0 344 1 1904 151 33 101 chr1 37911777 37911920 -244281744 - L1MA7 LINE L1 -38 6253 6102 2717 10 0 10 chr1 37911920 37912222 -244281442 - AluYa5 SINE Alu -12 299 1 1904 151 33 101 chr1 37912222 37912528 -244281136 - L1MA7 LINE L1 -189 6102 5837 484 103 0 0 chr1 37912523 37912591 -244281073 + L1MA7 LINE L1 5790 5857 -434 * 890 316 79 22 chr1 37912601 37913184 -244280480 + L2 LINE L2 2698 3312 -1 342 400 35 0 chr1 37913975 37914175 -244279489 - L3 LINE CR1 -6 1571 1365 4708 148 44 37 chr1 37914175 37915317 -244278347 + L1PB4 LINE L1 4999 6144 -12 268 241 46 37 chr1 37915235 37915322 -244278342 + L1MA4A LINE L1 6189 6279 -24 * 2110 118 3 0 chr1 37915322 37915609 -244278055 - AluSq SINE Alu -24 289 2 268 241 46 37 chr1 37915609 37915629 -244278035 + L1MA4A LINE L1 6279 6297 -6 300 330 62 46 chr1 37915633 37915740 -244277924 - L3 LINE CR1 -202 1375 1262 1815 186 33 53 chr1 37915740 37916138 -244277526 + MLT1B LTR MaLR 1 390 0 300 330 62 46 chr1 37916138 37916224 -244277440 - L3 LINE CR1 -315 1262 1179 230 250 61 106 chr1 37916254 37916386 -244277278 - L3 LINE CR1 -470 1107 982 190 343 0 0 chr1 37916716 37916783 -244276881 - L3 LINE CR1 -1174 403 337 189 324 56 0 chr1 37916838 37916909 -244276755 + MIR3 SINE MIR 98 172 -36 576 40 0 0 chr1 37916928 37917003 -244276661 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 266 370 35 23 chr1 37917104 37917277 -244276387 - L3 LINE CR1 -1340 237 63 264 250 58 29 chr1 37917328 37917432 -244276232 - L3 LINE CR1 -827 750 644 755 216 0 34 chr1 37917953 37918101 -244275563 - MER5A DNA MER1_type -46 143 1 248 250 18 0 chr1 37918434 37918490 -244275174 + L3b LINE CR1 1350 1406 -177 321 312 145 0 chr1 37918641 37918779 -244274885 + MIR SINE MIR 98 255 -7 714 186 45 62 chr1 37919400 37919577 -244274087 + MER5B DNA MER1_type 5 178 0 323 396 50 8 chr1 37919971 37920231 -244273433 + L1ME3A LINE L1 5619 5889 -281 582 245 184 22 chr1 37921878 37922156 -244271508 - MLT1K LTR MaLR -58 530 208 415 273 43 56 chr1 37922399 37922560 -244271104 + MER5A DNA MER1_type 30 188 -1 2156 111 0 3 chr1 37922897 37923194 -244270470 - AluSg SINE Alu -14 296 1 565 307 35 13 chr1 37923443 37923674 -244269990 + MIR SINE MIR 17 252 -10 214 327 18 62 chr1 37924711 37924824 -244268840 - L2 LINE L2 -49 3223 3116 2052 170 20 12 chr1 37924977 37925318 -244268346 - MER2 DNA MER2_type 0 344 1 189 200 0 36 chr1 37925554 37925609 -244268055 + L2 LINE L2 3261 3313 0 767 270 59 31 chr1 37925961 37926183 -244267481 + MIR SINE MIR 11 238 -24 186 241 0 74 chr1 37926150 37926204 -244267460 + L2 LINE L2 3251 3300 -13 * 1868 214 45 24 chr1 37926351 37926776 -244266888 - MER63B DNA MER1_type -1 435 2 304 336 67 0 chr1 37926943 37927062 -244266602 - L3 LINE CR1 -1092 485 359 16901 143 18 10 chr1 37927074 37928330 -244265334 - L1PA11 LINE L1 0 6174 4929 2342 103 0 3 chr1 37928330 37928641 -244265023 + AluY SINE Alu 1 310 -1 16901 143 18 10 chr1 37928641 37930917 -244262747 - L1PA11 LINE L1 -1245 4929 2605 287 292 54 65 chr1 37931004 37931172 -244262492 - L2 LINE L2 -3 3310 3145 261 349 43 59 chr1 37931286 37931311 -244262353 - L2 LINE L2 -212 3060 3036 1166 309 94 29 chr1 37931311 37931832 -244261832 - LTR67 LTR ERVL 0 557 3 261 349 43 59 chr1 37931832 37932007 -244261657 - L2 LINE L2 -236 3036 2870 321 89 0 0 chr1 37932007 37932052 -244261612 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 349 43 59 chr1 37932052 37932205 -244261459 - L2 LINE L2 -402 2870 2716 435 239 0 94 chr1 37932372 37932531 -244261133 - L1MEc LINE L1 -4740 2085 1942 423 0 0 0 chr1 37932536 37932583 -244261081 + (TG)n Simple_repeat Simple_repeat 2 48 0 413 301 54 42 chr1 37932614 37933022 -244260642 - L1MEc LINE L1 -4842 1700 1288 264 156 0 0 chr1 37933033 37933078 -244260586 + AluJ SINE Alu 85 129 -173 1011 155 0 6 chr1 37933105 37933266 -244260398 + AluJ SINE Alu 127 286 -26 764 206 14 7 chr1 37934012 37934158 -244259506 - FRAM SINE Alu -30 146 1 285 295 170 9 chr1 37934852 37934964 -244258700 + MIR SINE MIR 3 132 -130 268 234 158 70 chr1 37935113 37935271 -244258393 + L2 LINE L2 3115 3286 -27 235 239 56 56 chr1 37935282 37935353 -244258311 + MIR SINE MIR 126 196 -66 591 287 104 42 chr1 37935361 37935716 -244257948 - LTR16C LTR ERVL 0 491 115 844 11 0 0 chr1 37936090 37936183 -244257481 - L1PA4 LINE L1 -2 6153 6061 309 51 0 0 chr1 37936673 37936712 -244256952 + (GA)n Simple_repeat Simple_repeat 1 39 0 225 362 6 17 chr1 37936942 37937116 -244256548 + CT-rich Low_complexity Low_complexity 1 172 0 180 0 0 0 chr1 37937121 37937141 -244256523 + (CA)n Simple_repeat Simple_repeat 1 20 0 350 299 84 12 chr1 37937607 37937774 -244255890 + MIR SINE MIR 44 222 -40 298 235 118 0 chr1 37937970 37938055 -244255609 - MIR SINE MIR -86 176 82 23 0 0 0 chr1 37938055 37938078 -244255586 + AT_rich Low_complexity Low_complexity 1 23 0 254 281 125 0 chr1 37938078 37938174 -244255490 - MIR SINE MIR -17 245 138 21 0 0 0 chr1 37938174 37938195 -244255469 + AT_rich Low_complexity Low_complexity 1 21 0 2762 157 8 19 chr1 37938195 37938667 -244254997 - L1PA16 LINE L1 -1 6165 5699 1915 183 42 13 chr1 37938667 37939049 -244254615 + L1 LINE L1 4446 4838 -1308 337 245 75 47 chr1 37939058 37939164 -244254500 - MIR SINE MIR -60 148 40 464 303 16 31 chr1 37939422 37939736 -244253928 + CT-rich Low_complexity Low_complexity 1 309 0 413 220 39 167 chr1 37940778 37941114 -244252550 - MLT1I LTR MaLR -47 362 70 567 309 111 5 chr1 37941271 37941478 -244252186 + MIR SINE MIR 32 260 -2 830 246 30 71 chr1 37941609 37941877 -244251787 - MIR SINE MIR 0 262 6 1885 146 20 0 chr1 37942692 37942987 -244250677 - AluSx SINE Alu -11 301 1 688 304 127 24 chr1 37944160 37944578 -244249086 + L1ME4a LINE L1 5427 5887 -234 245 311 14 0 chr1 37944791 37944865 -244248799 - L2 LINE L2 -219 3053 2979 386 165 13 0 chr1 37945399 37945478 -244248186 + GA-rich Low_complexity Low_complexity 2 81 0 713 211 15 15 chr1 37945698 37945831 -244247833 - FLAM_C SINE Alu 0 133 1 245 338 58 29 chr1 37947339 37947478 -244246186 + L3 LINE CR1 953 1095 -482 567 290 117 9 chr1 37947552 37947766 -244245898 + MIR SINE MIR 24 260 -2 264 319 101 22 chr1 37947771 37947909 -244245755 + L3 LINE CR1 1146 1294 -283 3839 193 49 53 chr1 37947911 37948976 -244244688 - MER97c DNA MER1_type? -3 1087 27 421 259 12 40 chr1 37949020 37949190 -244244474 + L3 LINE CR1 1346 1576 -1 2664 223 81 38 chr1 37950222 37951192 -244242472 + Charlie7 DNA MER1_type 1596 2607 -5 333 257 22 59 chr1 37951401 37951537 -244242127 + L2 LINE L2 2960 3090 -182 798 293 72 7 chr1 37951794 37952084 -244241580 + MER102b DNA MER1_type 33 341 0 461 335 56 38 chr1 37952523 37952863 -244240801 - LTR16C LTR ERVL 0 491 146 509 344 45 11 chr1 37953001 37953407 -244240257 - ERVL LTR ERVL -3021 2743 2294 781 350 61 50 chr1 37953558 37953873 -244239791 - ERVL LTR ERVL -3834 1162 852 2285 102 0 6 chr1 37953873 37954188 -244239476 - AluSq SINE Alu 0 313 1 781 350 61 50 chr1 37954188 37955022 -244238642 - ERVL LTR ERVL -4144 852 1 474 342 66 25 chr1 37955024 37955343 -244238321 - LTR16C LTR ERVL -2 489 158 388 104 13 13 chr1 37955713 37955790 -244237874 + (TG)n Simple_repeat Simple_repeat 1 77 0 264 354 12 0 chr1 37956355 37956437 -244237227 + MIR3 SINE MIR 78 160 -48 484 311 74 33 chr1 37956510 37956754 -244236910 - MIR SINE MIR -7 255 2 190 318 79 0 chr1 37956949 37957012 -244236652 + MIR SINE MIR 178 245 -17 279 235 150 103 chr1 37957037 37957271 -244236393 + MLT1K LTR MaLR 19 263 -325 415 345 0 7 chr1 37959081 37959220 -244234444 + MIR SINE MIR 8 145 -117 655 227 76 54 chr1 37959246 37959478 -244234186 + MIR SINE MIR 2 241 -21 207 341 24 0 chr1 37959794 37959876 -244233788 + L2 LINE L2 3106 3189 -83 * 238 286 9 30 chr1 37959872 37959989 -244233675 + MIR SINE MIR 8 117 -120 303 109 164 0 chr1 37960040 37960095 -244233569 - MER5A DNA MER1_type -77 112 49 446 244 150 0 chr1 37960190 37960317 -244233347 + MIR SINE MIR 109 254 -8 386 281 45 0 chr1 37960341 37960430 -244233234 + L2 LINE L2 3180 3272 0 293 344 39 16 chr1 37961173 37961301 -244232363 + L2 LINE L2 3138 3268 -4 342 232 73 12 chr1 37961483 37961565 -244232099 - MIR SINE MIR -113 149 63 2012 99 3 11 chr1 37961934 37962239 -244231425 - AluSp SINE Alu 0 303 1 503 240 27 20 chr1 37962240 37962386 -244231278 - MER103 DNA DNA -12 154 8 183 42 0 0 chr1 37962394 37962418 -244231246 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 291 233 86 60 chr1 37963194 37963310 -244230354 - MLT1H LTR MaLR -16 526 408 304 302 9 28 chr1 37963393 37963499 -244230165 - MLT1H LTR MaLR -341 208 105 574 181 76 82 chr1 37964947 37965118 -244228546 + MIR SINE MIR 29 198 -64 1639 231 87 102 chr1 37965120 37965670 -244227994 + MLT1E LTR MaLR 1 593 0 417 287 63 35 chr1 37965733 37965876 -244227788 - MIR SINE MIR -105 157 11 1398 177 127 36 chr1 37966184 37966546 -244227118 + MSTD LTR MaLR 1 395 -1 572 241 25 43 chr1 37967650 37967812 -244225852 - MER5B DNA MER1_type -1 177 19 1171 144 16 21 chr1 37968478 37968665 -244224999 - MER5A DNA MER1_type -3 186 1 189 107 0 0 chr1 37968692 37968720 -244224944 + (TG)n Simple_repeat Simple_repeat 2 29 0 644 306 45 54 chr1 37968773 37969015 -244224649 - MIR SINE MIR -1 261 22 428 326 0 0 chr1 37969043 37969172 -244224492 - L2 LINE L2 -9 3304 3176 231 266 62 0 chr1 37969851 37969915 -244223749 + L2 LINE L2 3205 3272 0 1754 120 76 7 chr1 37970316 37970592 -244223072 - AluSx SINE Alu -17 295 1 698 248 7 0 chr1 37971264 37971413 -244222251 + MIR SINE MIR 32 181 -81 238 264 0 0 chr1 37971486 37971539 -244222125 - L2 LINE L2 0 3313 3261 231 341 102 12 chr1 37972684 37972851 -244220813 - L2 LINE L2 -1514 1800 1619 291 140 0 0 chr1 37972851 37972901 -244220763 + (TG)n Simple_repeat Simple_repeat 1 50 0 196 53 53 0 chr1 37973001 37973039 -244220625 + (TTTAA)n Simple_repeat Simple_repeat 2 41 0 2033 111 0 3 chr1 37973039 37973327 -244220337 - AluSg SINE Alu -23 287 1 539 308 81 15 chr1 37973327 37973525 -244220139 - MIR SINE MIR -3 259 49 619 257 168 13 chr1 37973578 37973804 -244219860 - MIR SINE MIR 0 262 2 782 274 31 31 chr1 37975422 37975476 -244218188 - MIR SINE MIR 0 262 209 2095 176 113 22 chr1 37975476 37975935 -244217729 + MLT1D LTR MaLR 1 501 -4 782 274 31 31 chr1 37975935 37976139 -244217525 - MIR SINE MIR -52 210 4 1022 187 16 0 chr1 37977113 37977295 -244216369 + MER5A DNA MER1_type 1 185 -4 352 310 90 14 chr1 37978461 37978606 -244215058 - MIR SINE MIR -70 192 37 245 236 194 79 chr1 37978847 37979012 -244214652 - HAL1 LINE L1 -23 2484 2301 1152 256 113 53 chr1 37979123 37979767 -244213897 - HAL1 LINE L1 -423 2084 1402 747 279 50 76 chr1 37979794 37980501 -244213163 - HAL1 LINE L1 -1193 1314 627 1373 114 5 0 chr1 37980725 37980926 -244212738 - AluSg/x SINE Alu -16 296 95 321 260 31 31 chr1 37980929 37981025 -244212639 - HAL1 LINE L1 -1968 539 444 347 330 52 12 chr1 37981039 37981212 -244212452 - MLT1L LTR MaLR -18 597 418 563 274 157 0 chr1 37981287 37981440 -244212224 + MER5A DNA MER1_type 13 189 0 339 235 29 103 chr1 37981589 37981725 -244211939 - MLT1L LTR MaLR -456 159 34 310 290 109 49 chr1 37981956 37982139 -244211525 - HAL1 LINE L1 -2311 196 3 288 53 0 0 chr1 37982223 37982261 -244211403 + (TG)n Simple_repeat Simple_repeat 2 39 0 202 180 40 0 chr1 37982269 37982319 -244211345 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 312 215 77 54 chr1 37983597 37983727 -244209937 + L1ME4a LINE L1 5980 6112 -9 1233 110 34 64 chr1 37984276 37984512 -244209152 + AluSg/x SINE Alu 84 312 0 534 231 68 0 chr1 37985537 37985654 -244208010 - MIR SINE MIR -17 245 121 1083 251 149 17 chr1 37985834 37986244 -244207420 + LTR16C LTR ERVL 2 465 -26 181 259 17 52 chr1 37986731 37986789 -244206875 + MIR SINE MIR 91 146 -116 369 248 50 37 chr1 37987643 37987804 -244205860 + LTR33 LTR ERVL 109 271 -250 302 192 0 55 chr1 37988238 37988311 -244205353 + AluSc SINE Alu 94 162 -137 263 186 0 0 chr1 37988310 37988353 -244205311 + LTR33 LTR ERVL 479 521 0 * 258 136 0 0 chr1 37988770 37988814 -244204850 + (T)n Simple_repeat Simple_repeat 1 44 0 1445 166 46 33 chr1 37989756 37989878 -244203786 + AluJo SINE Alu 1 120 -192 288 77 0 0 chr1 37989878 37989917 -244203747 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1445 166 46 33 chr1 37989917 37990101 -244203563 + AluJo SINE Alu 120 311 -1 539 198 58 25 chr1 37990371 37990492 -244203172 - L2 LINE L2 -1 3312 3188 315 148 99 25 chr1 37990509 37990590 -244203074 - MIR SINE MIR -74 188 102 419 262 137 11 chr1 37990862 37991045 -244202619 + MIR SINE MIR 51 256 -6 1115 279 97 11 chr1 37994839 37995284 -244198380 - MLT1G1 LTR MaLR -38 557 75 240 305 49 0 chr1 37995769 37995851 -244197813 + MLT1K LTR MaLR 494 579 -9 1013 163 0 24 chr1 37995955 37996121 -244197543 - AluSg/x SINE Alu -11 301 140 322 228 38 0 chr1 37996143 37996222 -244197442 - MIR SINE MIR -71 191 110 197 205 0 0 chr1 37997007 37997046 -244196618 - L2 LINE L2 -7 3306 3268 857 204 132 56 chr1 37998076 37998510 -244195154 - MLT1B LTR MaLR -5 451 1 3284 109 124 0 chr1 37998949 37999471 -244194193 + LTR49 LTR ERV1 9 595 0 1801 203 60 18 chr1 38000339 38000787 -244192877 - MLT1C LTR MaLR 0 467 1 264 293 193 7 chr1 38000787 38000937 -244192727 - L2 LINE L2 -195 3077 2900 505 332 34 14 chr1 38001027 38001322 -244192342 - L2 LINE L2 -527 2787 2487 630 221 56 94 chr1 38002144 38002357 -244191307 - MIR SINE MIR -35 227 23 313 259 143 70 chr1 38004182 38004483 -244189181 - MLT1H LTR MaLR -16 533 211 417 39 0 0 chr1 38005000 38005051 -244188613 + (TG)n Simple_repeat Simple_repeat 2 52 0 678 273 76 32 chr1 38005692 38005766 -244187898 - MLT1I LTR MaLR -6 403 334 2560 71 0 0 chr1 38005766 38006075 -244187589 + AluY SINE Alu 3 311 0 678 273 76 32 chr1 38006075 38006353 -244187311 - MLT1I LTR MaLR -75 334 1 1628 189 22 26 chr1 38007989 38008302 -244185362 + AluJo SINE Alu 1 312 0 298 245 194 10 chr1 38008349 38008447 -244185217 + MIR SINE MIR 47 162 -100 252 250 83 10 chr1 38008470 38008566 -244185098 - L2 LINE L2 -636 2678 2576 1306 204 56 58 chr1 38008566 38008959 -244184705 - MLT2C1 LTR ERVL 0 397 6 253 214 34 45 chr1 38009216 38009305 -244184359 + MIR SINE MIR 123 210 -52 189 326 11 21 chr1 38009569 38009664 -244184000 + L2 LINE L2 2983 3076 -196 521 302 98 25 chr1 38009978 38010213 -244183451 - MIR SINE MIR -6 256 5 300 27 0 0 chr1 38010275 38010312 -244183352 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 298 19 29 chr1 38011100 38011204 -244182460 + GA-rich Low_complexity Low_complexity 4 106 0 2298 90 3 0 chr1 38011716 38012004 -244181660 + AluSc SINE Alu 1 289 -20 697 268 16 0 chr1 38012077 38012260 -244181404 - Charlie1 DNA MER1_type -2519 242 57 404 323 36 15 chr1 38014619 38014814 -244178850 + MLT1K LTR MaLR 24 222 -366 875 204 52 46 chr1 38014817 38015177 -244178487 + MSTD LTR MaLR 3 396 0 6430 206 44 109 chr1 38015179 38015954 -244177710 + MSTD-int LTR MaLR 2 826 -909 888 174 32 0 chr1 38015954 38016109 -244177555 + Tigger3(Golem) DNA MER2_type 2869 3028 -1 6430 206 44 109 chr1 38016109 38017035 -244176629 + MSTD-int LTR MaLR 826 1735 0 1747 177 102 8 chr1 38017035 38017397 -244176267 + MSTD LTR MaLR 1 396 0 322 246 46 97 chr1 38017672 38017727 -244175937 + MLT1K LTR MaLR 421 477 -111 1314 146 4 49 chr1 38017727 38017953 -244175711 + MER20 DNA MER1_type 4 219 0 322 246 46 97 chr1 38017953 38018072 -244175592 + MLT1K LTR MaLR 477 586 -2 2267 140 137 9 chr1 38018999 38019436 -244174228 + MLT1D LTR MaLR 6 498 -7 1574 139 130 50 chr1 38019531 38019837 -244173827 - MLT1A1 LTR MaLR 0 365 28 270 0 0 0 chr1 38019837 38019867 -244173797 + (TA)n Simple_repeat Simple_repeat 2 31 0 1574 139 130 50 chr1 38019867 38019898 -244173766 - MLT1A1 LTR MaLR -337 28 1 253 226 48 24 chr1 38020076 38020160 -244173504 - MIR SINE MIR -32 230 145 269 333 49 16 chr1 38020246 38020369 -244173295 - MIR SINE MIR -113 149 23 328 276 0 0 chr1 38020979 38021055 -244172609 + MLT1J LTR MaLR 124 199 -312 399 240 53 47 chr1 38021121 38021271 -244172393 + MLT1J2 LTR MaLR 297 447 -3 200 281 122 0 chr1 38022408 38022490 -244171174 + MIR SINE MIR 139 230 -32 732 210 38 21 chr1 38022499 38022685 -244170979 + MIR SINE MIR 15 203 -59 339 288 114 53 chr1 38022778 38023059 -244170605 - L1M4 LINE L1 -1990 4156 3859 1873 159 188 55 chr1 38023165 38023244 -244170420 - MLT2B1 LTR ERVL -8 512 445 1416 24 0 0 chr1 38023244 38023409 -244170255 - L1PA5 LINE L1 -8 6146 5982 1873 159 188 55 chr1 38023409 38023781 -244169883 - MLT2B1 LTR ERVL -75 445 1 239 326 36 25 chr1 38024320 38024516 -244169148 - L1M4 LINE L1 -2314 3832 3635 26 0 0 0 chr1 38024755 38024781 -244168883 + AT_rich Low_complexity Low_complexity 1 26 0 2657 52 0 0 chr1 38025065 38025374 -244168290 + AluY SINE Alu 1 309 -2 22 0 0 0 chr1 38025374 38025396 -244168268 + AT_rich Low_complexity Low_complexity 1 22 0 643 286 122 23 chr1 38026591 38027138 -244166526 - L2 LINE L2 0 3313 2690 11294 204 58 22 chr1 38027142 38030951 -244162713 + L1MDa LINE L1 18 3966 -2574 423 70 43 35 chr1 38030987 38031102 -244162562 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 762 205 29 48 chr1 38031129 38031257 -244162407 + L1MDa LINE L1 3960 4084 -2456 695 235 184 24 chr1 38031257 38031512 -244162152 + AluY SINE Alu 5 300 -1 762 205 29 48 chr1 38031512 38031593 -244162071 + L1MDa LINE L1 4084 4165 -2375 * 7027 244 33 21 chr1 38031591 38033127 -244160537 - L1MEc LINE L1 -1671 4544 2973 1755 183 24 3 chr1 38033127 38033422 -244160242 - AluJb SINE Alu -10 302 2 7027 244 33 21 chr1 38033422 38034063 -244159601 - L1MEc LINE L1 -3242 2973 2341 4334 201 31 44 chr1 38034058 38035081 -244158583 - L1MCb LINE L1 -4856 1189 649 * 2340 39 78 0 chr1 38035081 38035365 -244158299 - AluY SINE Alu -4 307 2 4334 201 31 44 chr1 38035365 38036003 -244157661 - L1MCb LINE L1 -5396 649 4 2779 186 92 38 chr1 38036022 38036992 -244156672 - L1MEc LINE L1 -3859 2356 1365 465 216 92 123 chr1 38037175 38037718 -244155946 - L1ME4a LINE L1 -210 5911 5386 332 318 9 27 chr1 38037745 38037855 -244155809 - MLT1K LTR MaLR -430 158 51 2148 118 0 37 chr1 38037910 38038233 -244155431 + AluSx SINE Alu 1 311 -1 509 295 234 13 chr1 38039363 38039739 -244153925 - L2 LINE L2 -10 3303 2845 447 282 35 12 chr1 38040895 38041065 -244152599 + MIR3 SINE MIR 14 187 -21 612 301 94 35 chr1 38041767 38042109 -244151555 - L2 LINE L2 0 3313 2952 401 285 93 31 chr1 38042895 38043088 -244150576 + MIR SINE MIR 48 252 -10 360 322 91 31 chr1 38043403 38043822 -244149842 + HAL1b LINE L1 249 692 -656 552 323 64 20 chr1 38044328 38044734 -244148930 + L1ME4a LINE L1 4441 4864 -1282 312 335 28 28 chr1 38045111 38045290 -244148374 + L1ME4a LINE L1 5255 5433 -2375 365 302 16 0 chr1 38045366 38045495 -244148169 + L1ME4a LINE L1 5586 5716 -405 542 231 15 0 chr1 38045536 38045666 -244147998 - MIR SINE MIR -13 249 118 241 232 93 121 chr1 38045670 38046067 -244147597 + L1ME4a LINE L1 5734 6119 -2 427 211 66 107 chr1 38046884 38047173 -244146491 - L2 LINE L2 -50 3263 2987 820 0 20 0 chr1 38047924 38048024 -244145640 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2182 120 0 0 chr1 38048025 38048308 -244145356 - AluSx SINE Alu -29 283 1 311 240 29 29 chr1 38048858 38048962 -244144702 - L2 LINE L2 -237 3035 2932 794 258 65 8 chr1 38048964 38049212 -244144452 + MIR SINE MIR 1 262 0 313 280 53 45 chr1 38050863 38050960 -244142704 + L2 LINE L2 3180 3280 -33 1712 152 115 93 chr1 38050960 38051454 -244142210 + MLT1D LTR MaLR 1 505 0 313 280 53 45 chr1 38051454 38051488 -244142176 + L2 LINE L2 3280 3312 -1 445 268 58 89 chr1 38051881 38052172 -244141492 - L1MC4a LINE L1 -106 6015 5732 1033 267 44 56 chr1 38053961 38054302 -244139362 + MLT1J LTR MaLR 1 337 -174 226 260 27 14 chr1 38055056 38055129 -244138535 + MLT1I LTR MaLR 63 136 -273 187 289 154 34 chr1 38055852 38056001 -244137663 + L2 LINE L2 2711 2877 -437 733 173 67 17 chr1 38056875 38057054 -244136610 + MER53 DNA DNA 2 189 0 333 177 0 0 chr1 38057154 38057216 -244136448 + MIR SINE MIR 164 225 -37 241 282 81 32 chr1 38057504 38057628 -244136036 + L2 LINE L2 3142 3271 -1 199 359 52 36 chr1 38057784 38057976 -244135688 + MIR SINE MIR 43 237 -25 215 259 53 63 chr1 38059292 38059481 -244134183 + L2 LINE L2 2550 2736 -578 330 281 0 0 chr1 38060189 38060278 -244133386 - MIR3 SINE MIR -39 169 81 577 212 77 97 chr1 38061505 38061764 -244131900 + MIR SINE MIR 4 257 -5 386 293 133 0 chr1 38062105 38062266 -244131398 + MER5A DNA MER1_type 4 188 -1 260 314 25 25 chr1 38062307 38062428 -244131236 + L2 LINE L2 3138 3258 -14 327 318 34 20 chr1 38062680 38062828 -244130836 - L3 LINE CR1 -1148 429 280 183 386 24 24 chr1 38062914 38063041 -244130623 - L3 LINE CR1 -1403 174 48 377 202 98 109 chr1 38063549 38063742 -244129922 + MLT1L LTR MaLR 2 192 -423 579 264 82 34 chr1 38063895 38064103 -244129561 + MLT1L LTR MaLR 382 599 -16 208 167 0 24 chr1 38064228 38064270 -244129394 + (CA)n Simple_repeat Simple_repeat 2 42 0 1190 242 22 72 chr1 38064744 38065190 -244128474 - LTR16A LTR ERVL 0 450 27 217 241 138 0 chr1 38065242 38065329 -244128335 + L2 LINE L2 3170 3268 -4 1465 266 147 38 chr1 38065588 38066593 -244127071 + L1ME4a LINE L1 5009 6121 0 517 60 12 24 chr1 38067286 38067369 -244126295 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 427 208 66 107 chr1 38068120 38068409 -244125255 + L2 LINE L2 2987 3263 -50 252 229 93 121 chr1 38069226 38069623 -244124041 - L1ME4a LINE L1 -2 6119 5734 542 231 15 0 chr1 38069627 38069757 -244123907 + MIR SINE MIR 118 249 -13 365 302 16 0 chr1 38069798 38069927 -244123737 - L1ME4a LINE L1 -405 5716 5586 312 335 28 28 chr1 38070003 38070182 -244123482 - L1ME4a LINE L1 -2375 5433 5255 573 320 64 20 chr1 38070559 38070965 -244122699 - L1ME4a LINE L1 -1282 4864 4441 360 322 91 31 chr1 38071471 38071890 -244121774 - HAL1b LINE L1 -656 692 249 401 285 93 31 chr1 38072205 38072398 -244121266 - MIR SINE MIR -10 252 48 612 301 94 35 chr1 38073184 38073526 -244120138 + L2 LINE L2 2952 3313 0 447 282 35 12 chr1 38074228 38074398 -244119266 - MIR3 SINE MIR -21 187 14 501 298 234 13 chr1 38075554 38075930 -244117734 + L2 LINE L2 2845 3303 -10 2148 118 0 37 chr1 38077060 38077383 -244116281 - AluSx SINE Alu -1 311 1 332 318 9 27 chr1 38077438 38077548 -244116116 + MLT1K LTR MaLR 51 158 -430 465 216 92 123 chr1 38077575 38078118 -244115546 + L1ME4a LINE L1 5386 5911 -210 1056 152 55 74 chr1 38078296 38078552 -244115112 + L1MCa LINE L1 1371 1621 -4805 1876 127 45 14 chr1 38079245 38079536 -244114128 - AluJb SINE Alu -12 300 1 322 330 51 11 chr1 38080616 38080792 -244112872 - MIR SINE MIR -35 227 45 182 280 0 0 chr1 38080844 38080894 -244112770 + L2 LINE L2 2922 2971 -343 183 216 98 0 chr1 38081100 38081151 -244112513 - MIR SINE MIR -122 140 85 615 204 53 53 chr1 38081218 38081370 -244112294 + MLT1J2 LTR MaLR 3 154 -296 523 286 74 0 chr1 38081415 38081590 -244112074 + MLT1J2 LTR MaLR 229 416 -34 3705 291 108 14 chr1 38082202 38084163 -244109501 - L2 LINE L2 0 3313 1083 518 278 121 5 chr1 38084723 38084921 -244108743 - MIR SINE MIR -38 224 4 644 290 37 22 chr1 38086623 38086892 -244106772 - L1ME4a LINE L1 -165 5956 5684 655 323 19 8 chr1 38087003 38087260 -244106404 - MIR SINE MIR 0 262 3 1005 246 95 35 chr1 38087373 38087808 -244105856 + MLT1H LTR MaLR 20 541 -8 318 50 0 0 chr1 38088469 38088509 -244105155 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 203 231 0 0 chr1 38088550 38088589 -244105075 - L2 LINE L2 -98 3174 3136 1195 99 0 117 chr1 38088687 38088894 -244104770 - AluSg/x SINE Alu 0 330 153 2646 48 0 6 chr1 38088894 38089207 -244104457 - AluY SINE Alu 0 311 1 1195 99 0 117 chr1 38089207 38089260 -244104404 - AluSg/x SINE Alu -177 153 95 475 336 44 22 chr1 38090010 38090281 -244103383 - L2 LINE L2 -480 2834 2558 * 920 251 16 16 chr1 38090276 38090523 -244103141 + MIR SINE MIR 12 258 -4 256 262 58 76 chr1 38090845 38091017 -244102647 - MIR SINE MIR -74 188 20 280 320 41 8 chr1 38091326 38091448 -244102216 - MIR SINE MIR -36 226 101 485 293 29 33 chr1 38091713 38091957 -244101707 - MIR SINE MIR 0 262 18 2213 133 0 0 chr1 38092229 38092538 -244101126 + AluSc SINE Alu 1 309 0 610 101 8 17 chr1 38092540 38092659 -244101005 + (GGAA)n Simple_repeat Simple_repeat 3 120 0 258 350 59 25 chr1 38092678 38092797 -244100867 + MIR SINE MIR 42 163 -63 435 213 91 119 chr1 38092797 38093040 -244100624 - MLT1G1 LTR MaLR -2 593 330 532 234 74 55 chr1 38093599 38093843 -244099821 - MLT1G1 LTR MaLR -366 229 2 299 296 12 0 chr1 38093866 38093947 -244099717 + MIR SINE MIR 181 262 0 789 347 60 22 chr1 38094617 38095167 -244098497 + L2 LINE L2 2736 3302 -11 1769 227 121 23 chr1 38095866 38096338 -244097326 + MLT1H LTR MaLR 5 522 -27 551 299 87 17 chr1 38097478 38097709 -244095955 + MIR SINE MIR 10 256 -6 385 327 74 26 chr1 38098078 38098347 -244095317 - MLT1J LTR MaLR 0 511 230 255 31 0 0 chr1 38098440 38098472 -244095192 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 279 206 14 14 chr1 38098581 38098654 -244095010 - MLT1L LTR MaLR -538 77 5 300 53 0 0 chr1 38099262 38099300 -244094364 + (CTG)n Simple_repeat Simple_repeat 1 38 0 751 286 124 14 chr1 38099300 38099656 -244094008 + LTR16A1 LTR ERVL 63 457 0 302 288 84 71 chr1 38099821 38100144 -244093520 + L2 LINE L2 198 524 -2790 246 296 178 49 chr1 38100165 38100513 -244093151 + L1MC4a LINE L1 5575 5967 -1841 366 206 93 21 chr1 38101237 38101334 -244092330 + MIR SINE MIR 12 115 -147 278 181 264 0 chr1 38101343 38101415 -244092249 + MER91C DNA MER1_type 20 110 -30 562 303 7 0 chr1 38101434 38101586 -244092078 + MIR SINE MIR 108 260 -2 228 271 0 0 chr1 38101587 38101646 -244092018 + (CACCAT)n Simple_repeat Simple_repeat 1 59 0 211 308 103 9 chr1 38102917 38103024 -244090640 - MIR SINE MIR -32 230 114 227 207 40 55 chr1 38103142 38103228 -244090436 + MLT1J2 LTR MaLR 83 166 -243 293 344 25 32 chr1 38103292 38103449 -244090215 + MLT1J2 LTR MaLR 264 419 -31 512 293 84 23 chr1 38104131 38104346 -244089318 - MIR SINE MIR -27 235 8 258 32 0 0 chr1 38104648 38104679 -244088985 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 442 248 77 93 chr1 38104752 38105063 -244088601 + MLT1I LTR MaLR 100 405 -4 227 256 0 0 chr1 38105539 38105582 -244088082 + L2 LINE L2 3008 3050 -263 429 299 29 15 chr1 38105988 38106125 -244087539 + L2 LINE L2 3134 3272 0 390 292 14 10 chr1 38106716 38106848 -244086816 + MIR SINE MIR 23 152 -56 1025 210 16 47 chr1 38107079 38107139 -244086525 + MIR SINE MIR 12 72 -190 1990 80 4 8 chr1 38107139 38107403 -244086261 - AluY SINE Alu 0 311 49 1025 210 16 47 chr1 38107403 38107599 -244086065 + MIR SINE MIR 72 260 -2 546 259 13 7 chr1 38108855 38109010 -244084654 + MIR SINE MIR 15 166 -62 613 302 31 47 chr1 38110615 38110933 -244082731 + MLT1K LTR MaLR 275 587 -1 195 162 0 0 chr1 38111251 38111288 -244082376 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 3583 233 50 17 chr1 38112348 38113874 -244079790 + L1ME2 LINE L1 2005 3585 -2797 2546 191 12 10 chr1 38113874 38114377 -244079287 + L1MB4 LINE L1 5677 6180 0 2632 218 57 40 chr1 38114377 38115614 -244078050 + L1ME2 LINE L1 5131 6390 -10 23 0 0 0 chr1 38115622 38115645 -244078019 + AT_rich Low_complexity Low_complexity 1 23 0 1372 314 98 39 chr1 38115670 38116722 -244076942 - L2 LINE L2 -339 2975 1862 196 341 0 24 chr1 38117073 38117155 -244076509 - L2 LINE L2 -2213 1101 1022 620 280 17 23 chr1 38117356 38117535 -244076129 + MIR3 SINE MIR 31 208 0 582 272 76 72 chr1 38118427 38118717 -244074947 - MLT1K LTR MaLR -8 580 290 258 95 0 0 chr1 38118724 38118766 -244074898 + (TC)n Simple_repeat Simple_repeat 1 42 0 487 343 42 39 chr1 38118766 38119052 -244074612 - MLT1K LTR MaLR -300 288 2 2414 134 108 5 chr1 38119879 38120267 -244073397 - MSTA LTR MaLR 0 428 1 9667 174 37 2 chr1 38120267 38121863 -244071801 - MSTA-int LTR MaLR 0 1651 1 255 91 0 0 chr1 38121864 38121897 -244071767 - MSTA LTR MaLR -395 33 1 1240 211 43 10 chr1 38122066 38122370 -244071294 + L1M4c LINE L1 4076 4389 -1993 697 199 37 0 chr1 38122370 38122506 -244071158 - MLT1A1 LTR MaLR 0 365 225 692 176 8 0 chr1 38122514 38122633 -244071031 + THE1-int LTR MaLR 1337 1456 -124 762 205 19 93 chr1 38122658 38122863 -244070801 - MLT1A1 LTR MaLR -171 194 5 3625 196 24 29 chr1 38122868 38123776 -244069888 + L1M4c LINE L1 4386 5289 -1093 278 266 36 57 chr1 38123773 38123965 -244069699 + L1MEc LINE L1 2214 2401 -4186 * 1829 262 129 36 chr1 38123969 38124552 -244069112 + L1MEc LINE L1 6 642 -5767 506 155 23 50 chr1 38124665 38124798 -244068866 + MLT1D LTR MaLR 411 503 -2 1080 258 78 50 chr1 38124811 38125295 -244068369 + L1MEc LINE L1 3863 4360 -2046 15744 229 36 12 chr1 38125307 38131620 -244062044 - L1PA16 LINE L1 0 6817 2 1681 255 44 21 chr1 38131626 38132237 -244061427 + L1MEc LINE L1 4352 4976 -1430 743 187 41 12 chr1 38132252 38132367 -244061297 + L1MD2 LINE L1 6182 6305 -54 1387 211 9 19 chr1 38132367 38132684 -244060980 - L1MA10 LINE L1 -4 6330 6017 743 187 41 12 chr1 38132684 38132739 -244060925 + L1MD2 LINE L1 6305 6357 -2 645 263 65 76 chr1 38132750 38132965 -244060699 + L1M4 LINE L1 2110 2319 -3827 1846 168 0 49 chr1 38132965 38133293 -244060371 - AluSx SINE Alu 0 312 1 645 263 65 76 chr1 38133293 38133511 -244060153 + L1M4 LINE L1 2319 2538 -3608 435 19 0 0 chr1 38133541 38133593 -244060071 + (TA)n Simple_repeat Simple_repeat 2 53 0 796 267 38 3 chr1 38133607 38133895 -244059769 + L1M4 LINE L1 2675 2972 -3174 3251 203 38 1 chr1 38133962 38134704 -244058960 + L1M4 LINE L1 1 2047 -4518 384 327 86 30 chr1 38134840 38134990 -244058674 - L2 LINE L2 -2197 1117 977 318 26 0 0 chr1 38134990 38135029 -244058635 + (TG)n Simple_repeat Simple_repeat 1 39 0 384 327 86 30 chr1 38135029 38135251 -244058413 - L2 LINE L2 -2337 977 724 2887 88 8 3 chr1 38135255 38135628 -244058036 - THE1C LTR MaLR 0 375 1 2150 141 43 27 chr1 38135641 38136017 -244057647 - MLT1B LTR MaLR -8 382 1 529 296 73 66 chr1 38136018 38136443 -244057221 - L2 LINE L2 -2592 722 295 1033 147 0 0 chr1 38136617 38136773 -244056891 - L1PA15 LINE L1 -1 6164 6009 3320 129 28 2 chr1 38137420 38137922 -244055742 - L1PA16 LINE L1 -2 6164 5650 5309 34 0 2 chr1 38138049 38138637 -244055027 - L1PA5 LINE L1 -4 6150 5564 274 250 185 9 chr1 38138664 38138772 -244054892 - L2 LINE L2 -33 3239 3113 2056 58 39 0 chr1 38139025 38139282 -244054382 + L1PA13 LINE L1 5896 6162 -1 343 322 79 0 chr1 38139427 38139604 -244054060 + L2 LINE L2 1527 1717 -1597 423 332 45 5 chr1 38139802 38140004 -244053660 + L2 LINE L2 2544 2753 -561 454 279 32 38 chr1 38140169 38140327 -244053337 - L2 LINE L2 -531 2783 2627 213 333 0 11 chr1 38140336 38140426 -244053238 - L2 LINE L2 -803 2511 2423 4791 101 1 3 chr1 38140447 38141104 -244052560 + L1PA13 LINE L1 5488 6143 -20 1033 280 91 103 chr1 38141362 38142599 -244051065 + L2 LINE L2 951 2172 -1142 942 234 25 0 chr1 38142616 38142813 -244050851 + MLT1H LTR MaLR 1 202 -347 247 328 58 87 chr1 38142975 38143286 -244050378 + L2 LINE L2 2882 3183 -89 1031 213 16 103 chr1 38144262 38144448 -244049216 + MLT1J1 LTR MaLR 1 149 -297 869 151 0 7 chr1 38144448 38144600 -244049064 + L1MB3 LINE L1 6032 6182 -1 1031 213 16 103 chr1 38144600 38144733 -244048931 + MLT1J1 LTR MaLR 149 292 -154 1693 231 75 33 chr1 38144802 38145365 -244048299 - MLT1F1 LTR MaLR -3 564 1 408 250 71 14 chr1 38146524 38146664 -244047000 - MIR3 SINE MIR -7 201 54 432 264 82 23 chr1 38146699 38146919 -244046745 - L2 LINE L2 0 3313 3081 398 253 173 13 chr1 38148007 38148157 -244045507 - MER5A DNA MER1_type -6 183 10 505 287 92 11 chr1 38148353 38148527 -244045137 + MER91A DNA MER1_type 6 193 -3 553 230 176 115 chr1 38148880 38149271 -244044393 - L2 LINE L2 0 3313 2899 476 150 0 143 chr1 38149494 38149634 -244044030 - L2 LINE L2 0 3313 3194 5734 138 42 12 chr1 38149998 38151146 -244042518 + L1MA4 LINE L1 5114 6289 -11 194 388 0 0 chr1 38151218 38151285 -244042379 + L2 LINE L2 3202 3268 -4 213 333 0 0 chr1 38151425 38151491 -244042173 + L2 LINE L2 3247 3312 -1 1054 200 42 114 chr1 38152599 38153070 -244040594 + MLT1C LTR MaLR 19 467 0 204 381 10 0 chr1 38153073 38153170 -244040494 - MIR SINE MIR -122 140 43 380 338 7 0 chr1 38153453 38153589 -244040075 + L2 LINE L2 3134 3270 -2 23 0 0 0 chr1 38153979 38154002 -244039662 + AT_rich Low_complexity Low_complexity 1 23 0 545 287 44 75 chr1 38154135 38154634 -244039030 + L1MC4a LINE L1 4903 5389 -975 1246 138 69 11 chr1 38154634 38154894 -244038770 - L1MA8 LINE L1 -2 6289 6015 545 287 44 75 chr1 38154894 38155096 -244038568 + L1MC4a LINE L1 5389 5596 -768 756 289 92 16 chr1 38155885 38156189 -244037475 + L1MC4a LINE L1 5569 5895 -1913 637 258 0 6 chr1 38158197 38158356 -244035308 + MIR SINE MIR 94 251 -11 502 241 128 27 chr1 38158404 38158591 -244035073 - MIR SINE MIR -55 207 2 794 198 44 6 chr1 38158857 38159039 -244034625 - MIR SINE MIR -71 191 3 363 265 146 13 chr1 38159289 38159440 -244034224 + MIR3 SINE MIR 33 203 -5 270 220 42 144 chr1 38159890 38160008 -244033656 - L2 LINE L2 0 3272 3167 393 39 0 0 chr1 38161346 38161397 -244032267 + (GA)n Simple_repeat Simple_repeat 2 52 0 284 208 42 14 chr1 38161404 38161476 -244032188 - MIR SINE MIR -150 112 39 1215 221 36 70 chr1 38162424 38162809 -244030855 + MLT1A2 LTR MaLR 1 372 -2 597 269 157 19 chr1 38163048 38163264 -244030400 + MIR SINE MIR 17 262 0 228 211 158 90 chr1 38163351 38163441 -244030223 + MLT1J LTR MaLR 236 339 -172 213 39 0 0 chr1 38163441 38163467 -244030197 + (TA)n Simple_repeat Simple_repeat 2 27 0 228 211 158 90 chr1 38163467 38163509 -244030155 + MLT1J LTR MaLR 339 377 -134 418 176 25 101 chr1 38163524 38163643 -244030021 - MIR SINE MIR -107 155 46 214 225 188 0 chr1 38164180 38164260 -244029404 - MIR3 SINE MIR -8 200 106 505 268 115 21 chr1 38164282 38164517 -244029147 - MIR SINE MIR -5 257 1 954 225 61 0 chr1 38165159 38165390 -244028274 + MIR SINE MIR 16 260 -2 814 193 10 51 chr1 38166292 38166489 -244027175 + MER5A DNA MER1_type 1 189 0 870 210 17 6 chr1 38166496 38166672 -244026992 + MER5B DNA MER1_type 1 178 0 194 261 0 31 chr1 38167516 38167581 -244026083 - MIR SINE MIR -14 248 186 691 243 131 63 chr1 38167632 38167999 -244025665 + MLT1I LTR MaLR 16 407 -2 2458 132 18 66 chr1 38168038 38168492 -244025172 - Tigger2a DNA MER2_type -2 432 1 424 260 124 28 chr1 38168492 38168669 -244024995 - MIR SINE MIR -62 200 7 578 299 82 0 chr1 38170045 38170252 -244023412 - MER58A DNA MER1_type 0 224 1 792 311 96 57 chr1 38170707 38171735 -244021929 + L2 LINE L2 2258 3313 0 182 118 29 0 chr1 38171783 38171817 -244021847 + CT-rich Low_complexity Low_complexity 6 40 0 1849 152 36 12 chr1 38171888 38172224 -244021440 - L1MB1 LINE L1 0 6168 5825 339 239 65 0 chr1 38172382 38172474 -244021190 + MIR SINE MIR 111 208 -54 348 239 91 0 chr1 38172595 38172683 -244020981 + L2 LINE L2 3193 3288 -25 1723 135 0 19 chr1 38172834 38173116 -244020548 + AluSx SINE Alu 42 312 0 400 315 100 85 chr1 38173747 38174087 -244019577 + L2 LINE L2 2927 3271 -1 691 306 85 20 chr1 38174153 38174447 -244019217 - MLT1I LTR MaLR -34 375 63 2284 97 0 19 chr1 38174564 38174875 -244018789 + AluSx SINE Alu 7 311 -1 372 265 23 30 chr1 38175484 38175616 -244018048 + Charlie8 DNA MER1_type 88 218 -2199 207 0 0 0 chr1 38175766 38175789 -244017875 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 43839 33 21 1 chr1 38175835 38181861 -244011803 - L1PA3 LINE L1 -1 6154 2 278 214 0 0 chr1 38183130 38183186 -244010478 + L1MEd LINE L1 1241 1296 -4909 23 33 0 0 chr1 38183362 38183392 -244010272 + AT_rich Low_complexity Low_complexity 1 30 0 851 301 79 32 chr1 38183479 38184596 -244009068 + L1MEd LINE L1 2144 3290 -2925 503 175 16 71 chr1 38184601 38184727 -244008937 - Tigger1 DNA MER2_type -2129 289 171 1673 161 81 0 chr1 38184728 38184989 -244008675 + AluJb SINE Alu 1 282 -30 1050 122 0 0 chr1 38185007 38185187 -244008477 + (TC)n Simple_repeat Simple_repeat 1 180 0 357 24 0 0 chr1 38185186 38185228 -244008436 + (CA)n Simple_repeat Simple_repeat 1 42 0 * 2059 126 0 7 chr1 38185246 38185531 -244008133 + AluSq SINE Alu 1 283 -30 1100 150 0 6 chr1 38185538 38185711 -244007953 - Tigger1 DNA MER2_type -2242 176 5 3010 163 100 9 chr1 38185722 38186262 -244007402 - MLT1D-int LTR MaLR -633 738 142 5471 166 9 4 chr1 38186262 38187181 -244006483 - MER49 LTR ERV1 0 923 1 3010 163 100 9 chr1 38187181 38187210 -244006454 - MLT1D-int LTR MaLR -1229 142 117 1411 44 0 22 chr1 38187288 38187469 -244006195 + L1PA11 LINE L1 5996 6172 -2 4040 259 66 19 chr1 38187479 38189131 -244004533 + L1ME3A LINE L1 2045 3746 -2469 1715 208 134 36 chr1 38189134 38190103 -244003561 + L1ME3A LINE L1 3883 4940 -1275 1716 209 65 51 chr1 38190103 38190595 -244003069 - MLT1D LTR MaLR 0 505 7 1289 224 84 32 chr1 38190607 38191045 -244002619 + L1ME3A LINE L1 4942 5402 -813 1959 165 0 0 chr1 38191045 38191342 -244002322 + AluSx SINE Alu 1 297 -15 774 255 67 29 chr1 38191342 38191689 -244001975 + L1ME3A LINE L1 5748 6100 -90 221 322 0 0 chr1 38191840 38191899 -244001765 - MIR SINE MIR -116 92 34 253 282 0 0 chr1 38192760 38192831 -244000833 - L2 LINE L2 -236 3036 2966 240 35 0 0 chr1 38193104 38193133 -244000531 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 71 0 0 chr1 38193135 38193191 -244000473 + AT_rich Low_complexity Low_complexity 1 56 0 233 393 72 23 chr1 38193353 38193658 -244000006 - L2 LINE L2 -557 2757 2438 2722 110 0 0 chr1 38193675 38194039 -243999625 - THE1B LTR MaLR 0 364 1 238 267 35 103 chr1 38194451 38194511 -243999153 - MIR SINE MIR -152 110 60 804 250 39 27 chr1 38194511 38194767 -243998897 - MIR SINE MIR 0 262 4 238 267 35 103 chr1 38194767 38194822 -243998842 - MIR SINE MIR -202 60 3 25 0 0 0 chr1 38195449 38195474 -243998190 + AT_rich Low_complexity Low_complexity 1 25 0 257 323 24 63 chr1 38195832 38195959 -243997705 + L2 LINE L2 2686 2807 -507 3266 126 107 44 chr1 38195987 38196575 -243997089 - MER51A LTR ERV1 -9 625 1 196 261 22 0 chr1 38196694 38196740 -243996924 + MIR SINE MIR 8 54 -208 470 345 64 16 chr1 38196741 38196990 -243996674 - MLT1K LTR MaLR -326 262 2 2061 201 22 65 chr1 38197005 38197546 -243996118 + MER113 DNA MER1_type? 4 521 0 525 332 94 28 chr1 38197788 38198258 -243995406 + L2 LINE L2 2371 2871 -443 411 281 90 77 chr1 38198326 38198636 -243995028 + L2 LINE L2 2950 3263 -9 4900 181 13 5 chr1 38199638 38200560 -243993104 - MER63C DNA MER1_type 0 930 2 819 204 92 29 chr1 38200832 38201038 -243992626 - MER20 DNA MER1_type 0 219 1 390 231 96 10 chr1 38201060 38201164 -243992500 - L2 LINE L2 0 3313 3201 351 303 59 25 chr1 38201194 38201313 -243992351 + L2 LINE L2 3141 3263 -9 2028 217 94 6 chr1 38201484 38202025 -243991639 - MLT1E3 LTR MaLR -4 620 7 204 350 103 0 chr1 38202121 38202238 -243991426 - MIR SINE MIR 0 262 134 197 159 45 0 chr1 38202232 38202276 -243991388 + L2 LINE L2 2936 2981 -332 * 2509 294 55 58 chr1 38202306 38203239 -243990425 + L1MC4 LINE L1 7112 8041 -1 229 206 16 16 chr1 38203285 38203348 -243990316 + L2 LINE L2 3103 3165 -148 * 263 222 48 16 chr1 38203327 38203390 -243990274 - MIR SINE MIR -54 208 144 212 319 43 21 chr1 38203389 38203483 -243990181 + L2 LINE L2 2935 3030 -283 * 601 225 47 0 chr1 38203500 38203629 -243990035 + L2 LINE L2 3174 3308 -5 1400 245 160 45 chr1 38203791 38204322 -243989342 + MLT1E LTR MaLR 1 592 -1 2057 126 0 0 chr1 38204521 38204814 -243988850 + AluSg SINE Alu 1 293 -17 1520 217 21 47 chr1 38205753 38206136 -243987528 - MLT1A2 LTR MaLR 0 374 2 1153 215 197 67 chr1 38206198 38206743 -243986921 + LTR50 LTR ERVL 83 793 -2 409 306 54 0 chr1 38206952 38207099 -243986565 + L2 LINE L2 3159 3313 0 222 150 0 0 chr1 38207112 38207152 -243986512 + (TGGA)n Simple_repeat Simple_repeat 3 42 0 2043 96 26 23 chr1 38207243 38207545 -243986119 + AluSc SINE Alu 1 303 -6 264 240 39 106 chr1 38207545 38207649 -243986015 - MLT1J LTR MaLR -41 470 374 342 240 20 10 chr1 38207725 38207874 -243985790 - MLT1J LTR MaLR -313 198 6 216 302 62 52 chr1 38208088 38208184 -243985480 + L3 LINE CR1 900 996 -581 426 293 134 0 chr1 38208227 38208391 -243985273 + MIR SINE MIR 77 262 0 1981 137 13 0 chr1 38208486 38208786 -243984878 + AluSx SINE Alu 1 304 -8 229 311 74 8 chr1 38208786 38208896 -243984768 + L3 LINE CR1 1111 1231 -346 2153 81 3 20 chr1 38208896 38209191 -243984473 + AluSc SINE Alu 1 290 -19 229 311 74 8 chr1 38209191 38209202 -243984462 + L3 LINE CR1 1231 1240 -337 253 250 0 0 chr1 38209323 38209375 -243984289 + L2 LINE L2 3200 3251 -62 2399 61 0 3 chr1 38209763 38210073 -243983591 + AluY SINE Alu 1 309 -2 222 229 42 0 chr1 38210087 38210135 -243983529 - L2 LINE L2 -8 3305 3256 2850 233 135 54 chr1 38210172 38211591 -243982073 - HAL1 LINE L1 -1 2506 972 332 298 71 71 chr1 38211950 38212286 -243981378 - HAL1 LINE L1 -2171 336 1 185 275 27 114 chr1 38212317 38212466 -243981198 - MIR SINE MIR -62 200 65 443 316 29 0 chr1 38212825 38212964 -243980700 + MER117 DNA MER1_type 6 148 -49 468 299 88 44 chr1 38213018 38213269 -243980395 - L3 LINE CR1 -859 718 457 180 0 0 0 chr1 38213606 38213626 -243980038 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 23 0 0 0 chr1 38214041 38214064 -243979600 + AT_rich Low_complexity Low_complexity 1 23 0 309 327 0 10 chr1 38214598 38214699 -243978965 + L2 LINE L2 2971 3070 -202 275 250 102 23 chr1 38215029 38215117 -243978547 + L2 LINE L2 3172 3266 -47 284 245 7 142 chr1 38215503 38215580 -243978084 - MER94 DNA DNA 0 134 87 1843 155 0 3 chr1 38215580 38215870 -243977794 - AluSx SINE Alu -23 289 1 284 245 7 142 chr1 38215870 38215947 -243977717 - MER94 DNA DNA -47 87 1 1898 290 111 36 chr1 38216145 38216617 -243977047 + L2 LINE L2 1940 2375 -938 2044 117 0 0 chr1 38216617 38216943 -243976721 - AluSx SINE Alu 0 326 1 1898 290 111 36 chr1 38216943 38217734 -243975930 + L2 LINE L2 2375 3313 0 347 173 27 0 chr1 38218727 38218802 -243974862 + GA-rich Low_complexity Low_complexity 4 80 0 2287 103 0 0 chr1 38218826 38219137 -243974527 + AluSq SINE Alu 2 312 -1 464 233 0 8 chr1 38219179 38219299 -243974365 - MER103 DNA DNA -46 120 2 216 149 21 43 chr1 38220494 38220541 -243973123 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 482 223 169 7 chr1 38220617 38220765 -243972899 + MIR SINE MIR 85 256 -6 861 255 30 0 chr1 38220929 38221129 -243972535 + MER3 DNA MER1_type 1 206 -3 470 262 10 0 chr1 38221268 38221371 -243972293 + L2 LINE L2 3210 3313 0 222 283 17 0 chr1 38221373 38221433 -243972231 + GA-rich Low_complexity Low_complexity 3 63 0 418 311 25 0 chr1 38221441 38221563 -243972101 - L3 LINE CR1 -110 1467 1343 2153 102 3 0 chr1 38221714 38222008 -243971656 + AluSg SINE Alu 1 295 -15 463 341 109 0 chr1 38222018 38222229 -243971435 - MIR SINE MIR -8 254 21 318 98 0 0 chr1 38223329 38223380 -243970284 + (TG)n Simple_repeat Simple_repeat 2 52 0 1004 146 27 16 chr1 38223538 38223723 -243969941 + MER53 DNA DNA 3 189 0 320 291 79 97 chr1 38223725 38224065 -243969599 + MLT1I LTR MaLR 57 390 -19 582 219 120 33 chr1 38224072 38224238 -243969426 + MIR SINE MIR 69 248 -14 399 226 78 0 chr1 38224745 38224847 -243968817 + MIR SINE MIR 32 141 -121 415 169 13 0 chr1 38225153 38225230 -243968434 + MIR SINE MIR 168 245 -17 378 0 0 0 chr1 38225361 38225403 -243968261 + (CA)n Simple_repeat Simple_repeat 2 43 0 310 257 114 84 chr1 38227024 38227261 -243966403 - MIR SINE MIR 0 262 19 753 202 0 8 chr1 38227789 38227918 -243965746 - FLAM_A SINE Alu -5 128 1 204 254 48 0 chr1 38228001 38228064 -243965600 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 500 154 0 136 chr1 38229090 38229200 -243964464 + MER2 DNA MER2_type 1 95 -250 232 162 0 0 chr1 38229197 38229234 -243964430 + MER2 DNA MER2_type 58 94 -251 * 1859 123 39 0 chr1 38229239 38229523 -243964141 + AluSx SINE Alu 1 295 -17 953 178 225 4 chr1 38229603 38229757 -243963907 + MER2 DNA MER2_type 64 183 -162 215 30 0 30 chr1 38229757 38229790 -243963874 + (TTG)n Simple_repeat Simple_repeat 2 33 0 953 178 225 4 chr1 38229790 38229866 -243963798 + MER2 DNA MER2_type 183 345 0 547 222 48 8 chr1 38229855 38229981 -243963683 + MER94 DNA DNA 2 132 -2 * 29 28 0 0 chr1 38231061 38231097 -243962567 + AT_rich Low_complexity Low_complexity 1 36 0 182 329 137 0 chr1 38231491 38231564 -243962100 - MIR SINE MIR -61 147 65 395 226 11 17 chr1 38232093 38232270 -243961394 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 218 194 32 32 chr1 38232288 38232350 -243961314 + CT-rich Low_complexity Low_complexity 1 62 0 257 311 0 0 chr1 38232391 38232452 -243961212 - L2 LINE L2 -87 3185 3125 213 276 147 71 chr1 38232530 38232910 -243960754 - L2 LINE L2 -29 3243 2835 272 358 188 0 chr1 38234522 38234687 -243958977 + MER91A DNA MER1_type 1 196 0 286 255 108 20 chr1 38235625 38235727 -243957937 + MIR SINE MIR 16 126 -82 283 303 278 0 chr1 38235930 38236092 -243957572 + MIR SINE MIR 34 240 -22 291 71 0 0 chr1 38236848 38236890 -243956774 + (CA)n Simple_repeat Simple_repeat 2 43 0 453 294 128 32 chr1 38237228 38237446 -243956218 + MIR SINE MIR 20 258 -4 725 195 47 86 chr1 38237869 38238125 -243955539 + L1MC5 LINE L1 7659 7904 -57 233 219 404 0 chr1 38238307 38238453 -243955211 + MIR SINE MIR 48 252 -10 284 318 33 45 chr1 38238882 38239118 -243954546 - MIR SINE MIR -12 250 19 974 255 16 20 chr1 38239192 38239443 -243954221 - L3 LINE CR1 -778 799 550 856 280 179 14 chr1 38239652 38240160 -243953504 + L2 LINE L2 2706 3311 -2 204 286 0 32 chr1 38241165 38241228 -243952436 + MIR SINE MIR 2 62 -200 369 165 17 113 chr1 38241317 38241432 -243952232 - MIR SINE MIR 0 262 159 227 266 0 16 chr1 38241432 38241496 -243952168 + MLT1H LTR MaLR 1 63 -486 270 192 19 0 chr1 38241567 38241619 -243952045 + MLT1H LTR MaLR 223 275 -274 650 214 29 0 chr1 38241707 38241847 -243951817 + MLT1H LTR MaLR 406 549 0 566 255 65 7 chr1 38241847 38242000 -243951664 - MIR SINE MIR -99 163 2 516 283 97 20 chr1 38242039 38242392 -243951272 - L2 LINE L2 -187 3085 2709 374 317 116 27 chr1 38242456 38242680 -243950984 - MIR SINE MIR -6 256 13 499 211 16 16 chr1 38242701 38242824 -243950840 + MIR3 SINE MIR 6 128 -80 237 220 20 10 chr1 38243306 38243406 -243950258 + (CA)n Simple_repeat Simple_repeat 1 101 0 424 244 6 6 chr1 38243478 38243638 -243950026 + (CA)n Simple_repeat Simple_repeat 1 160 0 207 216 0 0 chr1 38244152 38244189 -243949475 + MIR SINE MIR 118 154 -108 325 279 45 27 chr1 38244479 38244590 -243949074 - MER5A DNA MER1_type -20 169 57 601 301 62 18 chr1 38245547 38245773 -243947891 + MIR SINE MIR 21 256 -6 363 303 74 8 chr1 38245927 38246049 -243947615 - L2 LINE L2 -2 3270 3141 469 295 114 12 chr1 38246500 38246708 -243946956 - MIR SINE MIR -1 261 38 253 345 26 0 chr1 38246828 38246941 -243946723 - L2 LINE L2 -225 3047 2932 2308 118 0 9 chr1 38247401 38247716 -243945948 + AluSx SINE Alu 1 312 0 2389 104 0 3 chr1 38249009 38249307 -243944357 - AluSq SINE Alu -15 298 2 339 320 68 20 chr1 38249321 38249468 -243944196 + L2 LINE L2 3115 3268 -4 250 301 11 0 chr1 38249684 38249777 -243943887 + L2 LINE L2 2350 2443 -871 727 276 58 88 chr1 38250230 38250660 -243943004 + L2 LINE L2 2493 2883 -430 2042 155 0 3 chr1 38250660 38250969 -243942695 - AluJo SINE Alu -4 308 1 727 276 58 88 chr1 38250969 38251386 -243942278 + L2 LINE L2 2883 3311 -2 408 368 135 34 chr1 38251444 38251999 -243941665 + L3 LINE CR1 966 1576 -1 330 292 0 21 chr1 38252306 38252402 -243941262 + MIR SINE MIR 47 140 -122 363 308 89 24 chr1 38252659 38252828 -243940836 - MIR SINE MIR -49 213 34 264 30 0 0 chr1 38253116 38253149 -243940515 + (CAA)n Simple_repeat Simple_repeat 1 33 0 276 258 28 63 chr1 38253225 38253378 -243940286 - MIR SINE MIR -61 147 45 289 220 92 37 chr1 38253922 38254031 -243939633 + MIR SINE MIR 130 244 -18 298 333 140 14 chr1 38256151 38256373 -243937291 - MIR SINE MIR 0 262 13 242 194 65 0 chr1 38256656 38256718 -243936946 + MIR SINE MIR 48 113 -149 335 319 25 44 chr1 38256726 38256930 -243936734 - L2 LINE L2 0 3313 3114 227 59 29 0 chr1 38257098 38257132 -243936532 + MADE1 DNA Mariner 45 79 -1 190 318 35 0 chr1 38257132 38257217 -243936447 - L2 LINE L2 -206 3107 3020 290 140 0 0 chr1 38257273 38257323 -243936341 + L2 LINE L2 3264 3313 0 187 172 0 0 chr1 38257339 38257368 -243936296 + L2 LINE L2 3263 3291 -22 180 0 0 0 chr1 38257790 38257810 -243935854 + (A)n Simple_repeat Simple_repeat 1 20 0 278 261 62 51 chr1 38257908 38258084 -243935580 + MER3 DNA MER1_type 32 209 0 * 873 144 29 17 chr1 38257927 38258101 -243935563 - MER3 DNA MER1_type -6 203 28 483 263 42 94 chr1 38258113 38258197 -243935467 + MIR SINE MIR 31 118 -144 1773 162 61 24 chr1 38258197 38258573 -243935091 - MLT1B LTR MaLR 0 390 1 483 263 42 94 chr1 38258573 38258701 -243934963 + MIR SINE MIR 118 232 -30 205 366 0 12 chr1 38259081 38259163 -243934501 - L2 LINE L2 -38 3234 3154 622 254 49 5 chr1 38259233 38259418 -243934246 + MIR SINE MIR 70 262 0 492 312 87 9 chr1 38260398 38260616 -243933048 + MIR SINE MIR 14 248 -14 240 35 0 0 chr1 38261514 38261543 -243932121 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 252 297 0 0 chr1 38261548 38261612 -243932052 - L2 LINE L2 0 3272 3209 380 309 90 62 chr1 38261615 38262376 -243931288 - L2 LINE L2 -225 3047 2258 240 296 88 75 chr1 38262583 38262809 -243930855 + L2 LINE L2 3044 3272 0 260 137 78 20 chr1 38262878 38262929 -243930735 - MLT1J2 LTR MaLR -10 440 387 354 23 0 0 chr1 38263361 38263404 -243930260 + (TC)n Simple_repeat Simple_repeat 1 43 0 2177 142 18 28 chr1 38264080 38264474 -243929190 + MLT1B LTR MaLR 1 390 0 191 294 76 0 chr1 38264482 38264574 -243929090 + L2 LINE L2 2752 2850 -464 207 0 0 0 chr1 38264696 38264719 -243928945 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 681 155 0 17 chr1 38264722 38264838 -243928826 - FRAM SINE Alu -31 145 32 413 283 202 16 chr1 38264846 38265104 -243928560 + L2 LINE L2 3008 3313 0 399 145 0 0 chr1 38267335 38267418 -243926246 + (TG)n Simple_repeat Simple_repeat 1 83 0 221 226 0 19 chr1 38268003 38268056 -243925608 + (CCG)n Simple_repeat Simple_repeat 1 52 0 394 331 0 31 chr1 38268152 38268315 -243925349 + C-rich Low_complexity Low_complexity 3 160 0 183 139 0 0 chr1 38268911 38268947 -243924717 + (CGG)n Simple_repeat Simple_repeat 1 36 0 235 0 0 54 chr1 38269323 38269360 -243924304 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2456 89 0 9 chr1 38270108 38270424 -243923240 - AluSq SINE Alu 0 313 1 538 344 115 44 chr1 38270737 38270806 -243922858 + L2 LINE L2 1566 1629 -1685 2317 82 10 13 chr1 38270806 38271110 -243922554 - AluSp SINE Alu -10 303 1 538 344 115 44 chr1 38271110 38271967 -243921697 + L2 LINE L2 1629 2558 -756 257 319 43 22 chr1 38272265 38272403 -243921261 + L2 LINE L2 3171 3311 -2 696 286 92 4 chr1 38273238 38273465 -243920199 - MIR SINE MIR 0 262 16 317 331 14 42 chr1 38274117 38274259 -243919405 - MIR SINE MIR -105 157 20 222 274 0 0 chr1 38274258 38274320 -243919344 + MIR SINE MIR 201 262 0 * 208 299 10 41 chr1 38275227 38275324 -243918340 + (ATAGG)n Simple_repeat Simple_repeat 4 97 0 * 391 263 11 59 chr1 38275286 38275531 -243918133 + (GGATG)n Simple_repeat Simple_repeat 1 233 0 399 333 0 0 chr1 38277004 38277121 -243916543 + MIR SINE MIR 30 146 -62 201 214 71 43 chr1 38277269 38277339 -243916325 - L3 LINE CR1 -114 1463 1392 2418 97 0 0 chr1 38277975 38278273 -243915391 + AluSg SINE Alu 1 298 -12 571 327 37 47 chr1 38278317 38279124 -243914540 - L1ME3A LINE L1 -230 5940 5127 2389 147 14 53 chr1 38279481 38279684 -243913980 + L1MB3 LINE L1 5688 5897 -286 2149 135 0 0 chr1 38279684 38279987 -243913677 + AluSx SINE Alu 1 303 -9 2389 147 14 53 chr1 38279987 38280292 -243913372 + L1MB3 LINE L1 5897 6176 -7 196 330 54 9 chr1 38280300 38280412 -243913252 - L2 LINE L2 -189 3083 2967 1647 167 0 38 chr1 38280850 38281143 -243912521 + AluJo SINE Alu 1 282 -30 276 186 0 0 chr1 38281166 38281225 -243912439 + GA-rich Low_complexity Low_complexity 4 62 0 279 322 0 0 chr1 38281357 38281447 -243912217 + CT-rich Low_complexity Low_complexity 4 93 0 1670 179 0 24 chr1 38282060 38282356 -243911308 - AluJo SINE Alu -9 303 15 522 280 36 0 chr1 38282433 38282588 -243911076 - MIR SINE MIR -37 171 9 2149 143 0 9 chr1 38282616 38282931 -243910733 + AluJo SINE Alu 1 312 0 298 293 9 38 chr1 38282931 38283037 -243910627 + MER5A DNA MER1_type 63 165 -24 286 283 242 8 chr1 38284064 38284184 -243909480 + MER5A DNA MER1_type 41 188 -1 185 176 0 0 chr1 38284253 38284287 -243909377 + MIR SINE MIR 113 146 -62 399 221 21 11 chr1 38284389 38284484 -243909180 + L2 LINE L2 3202 3297 -16 225 0 0 0 chr1 38284485 38284510 -243909154 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 269 321 163 35 chr1 38285196 38285713 -243907951 + L2 LINE L2 1567 2016 -1298 2552 74 0 3 chr1 38285713 38286025 -243907639 - AluY SINE Alu 0 311 1 269 321 163 35 chr1 38286025 38286397 -243907267 + L2 LINE L2 2016 2570 -744 631 197 141 7 chr1 38286801 38286943 -243906721 + FRAM SINE Alu 1 160 -16 231 250 16 16 chr1 38289593 38289657 -243904007 - L2 LINE L2 -219 3053 2990 447 325 27 16 chr1 38289795 38289983 -243903681 - MIR SINE MIR -16 246 57 550 325 47 26 chr1 38290124 38290358 -243903306 - MIR SINE MIR -1 261 23 195 284 15 30 chr1 38290906 38290973 -243902691 - L2 LINE L2 -68 3204 3139 1042 271 145 22 chr1 38291003 38291773 -243901891 + L2 LINE L2 2443 3313 0 261 259 0 0 chr1 38292105 38292163 -243901501 + MIR SINE MIR 13 70 -192 388 272 99 43 chr1 38292253 38292438 -243901226 + MIR SINE MIR 21 213 -49 402 299 168 45 chr1 38292624 38292676 -243900988 + L2 LINE L2 2891 2935 -378 222 62 0 0 chr1 38292676 38292708 -243900956 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 402 299 168 45 chr1 38292708 38293030 -243900634 + L2 LINE L2 2935 3311 -2 2651 99 30 35 chr1 38293516 38293919 -243899745 - MSTC LTR MaLR -27 401 1 919 259 24 37 chr1 38294183 38294473 -243899191 + L1ME LINE L1 5482 5770 -351 406 281 37 15 chr1 38294493 38294628 -243899036 - MIR SINE MIR -73 189 52 265 347 33 8 chr1 38345510 38345631 -243848033 - L2 LINE L2 -4 3268 3145 1431 285 65 14 chr1 38345982 38346473 -243847191 - LTR33 LTR ERVL 0 521 6 1934 166 0 0 chr1 38346503 38346793 -243846871 - AluJb SINE Alu -22 290 1 268 237 10 41 chr1 38346874 38346971 -243846693 - MIR SINE MIR -112 150 57 777 144 30 30 chr1 38346973 38347105 -243846559 - FLAM_C SINE Alu 0 133 2 182 171 0 29 chr1 38348440 38348475 -243845189 - L2 LINE L2 -19 3294 3261 181 164 18 36 chr1 38349017 38349072 -243844592 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 2487 100 29 40 chr1 38349076 38349455 -243844209 + THE1C LTR MaLR 1 375 0 3384 209 1 33 chr1 38349468 38350129 -243843535 + MER82 DNA MER2_type 14 653 0 211 286 0 0 chr1 38350970 38351040 -243842624 + (TAA)n Simple_repeat Simple_repeat 2 71 0 4422 132 13 0 chr1 38351198 38351875 -243841789 + L1PA15 LINE L1 5480 6165 0 667 270 95 11 chr1 38351892 38352166 -243841498 - L1MC4 LINE L1 -27 8015 7719 2352 133 18 10 chr1 38352180 38352572 -243841092 - L1PA13 LINE L1 0 6163 5769 * 7415 55 0 7 chr1 38352564 38353880 -243839784 - L1PA8 LINE L1 -3 6169 4855 42265 36 26 2 chr1 38353980 38359083 -243834581 - L1P LINE L1 -919 5227 1 354 220 234 0 chr1 38359109 38359250 -243834414 - L2 LINE L2 -284 3029 2856 204 167 0 0 chr1 38360276 38360324 -243833340 + (CAGAGA)n Simple_repeat Simple_repeat 4 51 0 248 276 9 19 chr1 38360336 38360441 -243833223 + GA-rich Low_complexity Low_complexity 2 105 0 1692 167 0 43 chr1 38360467 38360772 -243832892 + AluJo SINE Alu 1 292 -20 296 182 136 11 chr1 38360995 38361083 -243832581 + MER97b DNA MER1_type? 1 99 -954 1577 27 6 6 chr1 38361163 38361346 -243832318 - AluY SINE Alu -128 183 1 737 150 6 50 chr1 38361348 38361508 -243832156 - L1MA8 LINE L1 -169 6122 5970 3379 193 33 68 chr1 38361512 38362491 -243831173 + MER97c DNA MER1_type? 119 1062 -28 1377 106 0 19 chr1 38362491 38362698 -243830966 + L1PB1 LINE L1 5948 6150 -1 27 0 0 0 chr1 38362698 38362725 -243830939 + AT_rich Low_complexity Low_complexity 1 27 0 803 204 63 11 chr1 38362787 38362978 -243830686 + MLT1A1 LTR MaLR 165 365 0 702 216 0 34 chr1 38363506 38363654 -243830010 + MER5A DNA MER1_type 1 143 -46 239 250 58 29 chr1 38364175 38364279 -243829385 + L3 LINE CR1 644 750 -827 225 370 35 23 chr1 38364330 38364503 -243829161 + L3 LINE CR1 63 237 -1340 540 42 0 0 chr1 38364604 38364675 -243828989 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 193 250 61 106 chr1 38365217 38365349 -243828315 + L3 LINE CR1 982 1107 -470 248 335 62 46 chr1 38365379 38365465 -243828199 + L3 LINE CR1 1179 1262 -315 1709 186 33 53 chr1 38365465 38365863 -243827801 - MLT1B LTR MaLR 0 390 1 248 335 62 46 chr1 38365863 38365970 -243827694 + L3 LINE CR1 1262 1375 -202 256 241 46 37 chr1 38365974 38365994 -243827670 - L1MA4A LINE L1 -6 6297 5991 2133 118 3 0 chr1 38365994 38366281 -243827383 + AluSq SINE Alu 2 289 -24 4668 146 44 37 chr1 38366286 38367428 -243826236 - L1PB4 LINE L1 -12 6144 4999 291 400 35 0 chr1 38367428 38367628 -243826036 + L3 LINE CR1 1365 1571 -6 745 329 71 13 chr1 38368419 38369002 -243824662 - L2 LINE L2 -1 3312 2698 481 103 0 0 chr1 38369012 38369080 -243824584 - L1MA7 LINE L1 -434 5857 5790 * 1877 151 33 101 chr1 38369075 38369381 -243824283 + L1MA7 LINE L1 5837 6162 -129 2758 10 0 10 chr1 38369381 38369684 -243823980 + AluYa5 SINE Alu 1 300 -11 1877 151 33 101 chr1 38369684 38369827 -243823837 + L1MA7 LINE L1 6162 6253 -38 1318 199 115 13 chr1 38369827 38370139 -243823525 + MER2 DNA MER2_type 1 344 0 1877 151 33 101 chr1 38370139 38370172 -243823492 + L1MA7 LINE L1 6253 6287 -4 1877 284 123 14 chr1 38370186 38371032 -243822632 - L2 LINE L2 -671 2643 1706 309 270 0 30 chr1 38371252 38371352 -243822312 - L2 LINE L2 -3 3310 3214 258 154 0 0 chr1 38371679 38371718 -243821946 + MSTB LTR MaLR 1 39 -387 1240 191 0 5 chr1 38371818 38372028 -243821636 + MSTB LTR MaLR 218 426 0 343 290 99 30 chr1 38372146 38372320 -243821344 + MLT1J LTR MaLR 31 178 -268 4499 259 77 36 chr1 38372328 38374964 -243818700 + L1ME1 LINE L1 34 2561 -3654 2198 62 0 0 chr1 38374964 38375236 -243818428 - L1PA4 LINE L1 0 6155 5884 4499 259 77 36 chr1 38375236 38375596 -243818068 + L1ME1 LINE L1 2561 2905 -3310 2511 83 0 3 chr1 38375596 38375908 -243817756 + AluY SINE Alu 1 311 0 4499 259 77 36 chr1 38375908 38376418 -243817246 + L1ME1 LINE L1 2905 3653 -2562 1464 173 4 11 chr1 38376418 38376690 -243816974 + L1P LINE L1 4533 4802 -1344 2097 237 52 10 chr1 38376705 38376775 -243816889 + L1ME1 LINE L1 4290 4356 -1859 2055 183 45 21 chr1 38376775 38377195 -243816469 - MSTB1 LTR MaLR 0 432 3 2097 237 52 10 chr1 38377195 38377783 -243815881 + L1ME1 LINE L1 4356 4981 -1234 527 0 0 16 chr1 38377783 38377847 -243815817 + (TAA)n Simple_repeat Simple_repeat 1 63 0 2097 237 52 10 chr1 38377847 38377878 -243815786 + L1ME1 LINE L1 4981 5009 -1206 286 194 30 0 chr1 38377876 38377943 -243815721 - L1M4 LINE L1 -1144 5002 4934 * 2483 209 32 41 chr1 38377941 38378470 -243815194 + L1ME1 LINE L1 5391 5914 -321 2893 91 5 0 chr1 38378470 38378875 -243814789 - L1PA13 LINE L1 0 6163 5757 2483 209 32 41 chr1 38378875 38379000 -243814664 + L1ME1 LINE L1 5914 6039 -196 2918 82 2 17 chr1 38379000 38379402 -243814262 + L1PA8A LINE L1 5709 6104 -27 22 35 0 0 chr1 38379407 38379436 -243814228 + AT_rich Low_complexity Low_complexity 1 29 0 592 212 153 6 chr1 38379457 38379628 -243814036 + L1ME1 LINE L1 6047 6246 -1 228 286 0 0 chr1 38379685 38379741 -243813923 + MLT1J LTR MaLR 283 338 -173 761 304 100 40 chr1 38379865 38380316 -243813348 - MLT1K LTR MaLR -107 481 4 407 271 85 0 chr1 38380716 38380834 -243812830 + MIR SINE MIR 62 189 -73 600 213 0 0 chr1 38382563 38382690 -243810974 + MIR SINE MIR 72 198 -64 192 145 81 113 chr1 38382726 38382760 -243810904 + MIR SINE MIR 203 236 -26 1939 175 135 16 chr1 38382760 38383211 -243810453 - MLT1D LTR MaLR 0 505 1 192 145 81 113 chr1 38383211 38383238 -243810426 + MIR SINE MIR 236 262 0 862 223 22 0 chr1 38383344 38383528 -243810136 - MER5A DNA MER1_type 0 189 2 308 228 13 0 chr1 38383550 38383629 -243810035 + L3 LINE CR1 1423 1502 -75 268 300 25 42 chr1 38383871 38383991 -243809673 + MIR SINE MIR 71 188 -74 416 303 35 0 chr1 38384431 38384573 -243809091 - MIR SINE MIR -7 255 109 225 259 167 0 chr1 38385919 38386027 -243807637 + L2 LINE L2 3179 3304 -9 685 296 100 44 chr1 38386325 38387178 -243806486 + L2 LINE L2 2357 3261 -52 209 32 0 32 chr1 38387289 38387320 -243806344 + (TAA)n Simple_repeat Simple_repeat 3 32 0 421 344 52 13 chr1 38387844 38388074 -243805590 - L3 LINE CR1 -352 1225 987 180 348 57 19 chr1 38388070 38388228 -243805436 - L2 LINE L2 -1109 2205 2042 * 225 269 199 28 chr1 38388551 38388692 -243804972 + MLT1K LTR MaLR 30 194 -394 1731 157 18 14 chr1 38389506 38389831 -243803833 - AluSx SINE Alu 0 326 1 999 197 22 0 chr1 38390355 38390533 -243803131 - MER58A DNA MER1_type 0 224 43 511 257 171 2 chr1 38390675 38390881 -243802783 + MIR SINE MIR 4 226 -36 293 326 94 33 chr1 38391126 38391519 -243802145 - L2 LINE L2 -457 2857 2441 208 155 69 69 chr1 38392631 38392689 -243800975 + MIR SINE MIR 118 175 -87 1452 189 139 16 chr1 38392717 38393034 -243800630 - L1MD3 LINE L1 -986 7009 6654 1423 79 138 5 chr1 38393160 38393363 -243800301 + MER30 DNA MER1_type 1 230 0 1246 254 83 38 chr1 38393663 38394060 -243799604 - LTR16C LTR ERVL -6 485 71 500 340 20 0 chr1 38394752 38394905 -243798759 + MER91A DNA MER1_type 1 156 -40 234 0 0 0 chr1 38394906 38394932 -243798732 + (T)n Simple_repeat Simple_repeat 1 26 0 2197 62 0 45 chr1 38395039 38395330 -243798334 - AluY SINE Alu -33 278 1 2479 146 21 5 chr1 38395496 38395880 -243797784 - MLT1B LTR MaLR 0 390 1 317 238 0 0 chr1 38396399 38396462 -243797202 + MER91 DNA MER1_type 78 140 0 1780 187 200 47 chr1 38396605 38397075 -243796589 + MLT1F LTR MaLR 1 542 0 2257 107 0 3 chr1 38397252 38397550 -243796114 - AluSg SINE Alu -13 297 1 33 25 0 0 chr1 38398289 38398329 -243795335 + AT_rich Low_complexity Low_complexity 1 40 0 244 145 79 0 chr1 38398645 38398721 -243794943 + (TA)n Simple_repeat Simple_repeat 2 83 0 237 208 56 14 chr1 38399168 38399240 -243794424 - L1MC4 LINE L1 -3 8039 7965 186 234 85 53 chr1 38399380 38399474 -243794190 - MIR SINE MIR -46 216 120 484 251 231 0 chr1 38399502 38399697 -243793967 + MIR SINE MIR 13 252 -10 1795 258 53 25 chr1 38400672 38401195 -243792469 + L1MB8 LINE L1 11 548 -6311 7965 227 38 16 chr1 38401202 38403325 -243790339 + L1MB8 LINE L1 3196 5365 -1592 3352 177 18 66 chr1 38403335 38404121 -243789543 + L1MB8 LINE L1 6241 6988 -1 5699 183 54 8 chr1 38404122 38405867 -243787797 + L1MC2 LINE L1 4514 6341 -3 541 298 34 21 chr1 38406360 38406404 -243787260 + MIR SINE MIR 18 60 -202 1664 262 125 21 chr1 38406404 38406939 -243786725 + MLT1E LTR MaLR 1 591 -2 541 298 34 21 chr1 38406939 38407079 -243786585 + MIR SINE MIR 60 208 -54 1705 169 140 29 chr1 38407079 38407464 -243786200 + MSTC LTR MaLR 1 428 0 541 298 34 21 chr1 38407464 38407516 -243786148 + MIR SINE MIR 208 258 -4 425 308 35 14 chr1 38408264 38408407 -243785257 + MER5A DNA MER1_type 44 189 0 555 179 55 21 chr1 38408459 38408604 -243785060 - MER117 DNA MER1_type -47 150 1 2686 246 184 26 chr1 38409499 38410743 -243782921 + HAL1 LINE L1 672 2111 -396 1006 241 96 30 chr1 38410936 38411343 -243782321 + HAL1 LINE L1 2047 2480 -27 2269 186 24 17 chr1 38411358 38414779 -243778885 + L1P4 LINE L1 4 3586 -3230 2200 104 10 0 chr1 38414779 38415068 -243778596 + AluSp SINE Alu 1 292 -21 2269 186 24 17 chr1 38415068 38417939 -243775725 + L1P4 LINE L1 3586 6436 -380 2518 90 0 0 chr1 38417941 38418284 -243775380 + L1P LINE L1 4471 4813 -1333 1024 321 27 25 chr1 38418392 38418808 -243774856 - L2 LINE L2 -407 2907 2488 4425 132 13 2 chr1 38418808 38419435 -243774229 + MER41B LTR ERV1 2 635 0 1024 321 27 25 chr1 38419435 38419573 -243774091 - L2 LINE L2 -826 2488 2352 979 298 109 20 chr1 38419678 38420127 -243773537 - L2 LINE L2 0 3313 2825 2873 151 4 26 chr1 38420131 38420237 -243773427 + L1MA8 LINE L1 5371 5478 -813 2276 108 16 0 chr1 38420237 38420544 -243773120 - AluSq SINE Alu 0 313 2 2873 151 4 26 chr1 38420544 38420941 -243772723 + L1MA8 LINE L1 5478 5863 -428 403 259 12 40 chr1 38421649 38421819 -243771845 - L3 LINE CR1 -1 1576 1346 3904 197 48 52 chr1 38421863 38422929 -243770735 + MER97c DNA MER1_type? 27 1087 -3 249 319 101 22 chr1 38422931 38423069 -243770595 - L3 LINE CR1 -283 1294 1146 537 308 109 10 chr1 38423074 38423308 -243770356 - MIR SINE MIR -2 260 2 230 338 58 29 chr1 38423362 38423501 -243770163 - L3 LINE CR1 -482 1095 953 765 211 15 15 chr1 38425009 38425142 -243768522 + FLAM_C SINE Alu 1 133 0 386 165 13 0 chr1 38425361 38425440 -243768224 + CT-rich Low_complexity Low_complexity 2 81 0 241 311 14 0 chr1 38425974 38426048 -243767616 + L2 LINE L2 2979 3053 -219 728 301 127 24 chr1 38426261 38426679 -243766985 - L1ME4a LINE L1 -234 5887 5427 1878 143 49 0 chr1 38427852 38428139 -243765525 + AluSx SINE Alu 1 301 -11 409 333 9 0 chr1 38428954 38429059 -243764605 + MIR SINE MIR 6 111 -151 567 309 111 5 chr1 38429424 38429631 -243764033 - MIR SINE MIR -2 260 32 413 220 39 167 chr1 38429788 38430124 -243763540 + MLT1I LTR MaLR 70 362 -47 221 167 19 0 chr1 38431988 38432042 -243761622 + GA-rich Low_complexity Low_complexity 1 55 0 321 329 7 23 chr1 38432120 38432321 -243761343 + GA-rich Low_complexity Low_complexity 1 197 0 337 245 75 47 chr1 38432587 38432693 -243760971 + MIR SINE MIR 40 148 -60 1934 182 42 13 chr1 38432702 38433086 -243760578 - L1 LINE L1 -1308 4838 4444 2762 157 8 19 chr1 38433086 38433556 -243760108 + L1PA16 LINE L1 5699 6165 -1 21 0 0 0 chr1 38433556 38433577 -243760087 + AT_rich Low_complexity Low_complexity 1 21 0 254 281 125 0 chr1 38433577 38433673 -243759991 + MIR SINE MIR 138 245 -17 23 0 0 0 chr1 38433673 38433696 -243759968 + AT_rich Low_complexity Low_complexity 1 23 0 298 235 118 0 chr1 38433696 38433781 -243759883 + MIR SINE MIR 82 176 -86 350 299 84 12 chr1 38433977 38434144 -243759520 - MIR SINE MIR -40 222 44 180 0 0 0 chr1 38434610 38434630 -243759034 + (TG)n Simple_repeat Simple_repeat 1 20 0 225 362 6 17 chr1 38434635 38434809 -243758855 + GA-rich Low_complexity Low_complexity 1 172 0 309 51 0 0 chr1 38435039 38435078 -243758586 + (TC)n Simple_repeat Simple_repeat 1 39 0 844 11 0 0 chr1 38435568 38435661 -243758003 + L1PA4 LINE L1 6061 6153 -2 591 287 104 42 chr1 38436035 38436390 -243757274 + LTR16C LTR ERVL 115 491 0 235 239 56 56 chr1 38436398 38436469 -243757195 - MIR SINE MIR -66 196 126 268 234 158 70 chr1 38436480 38436638 -243757026 - L2 LINE L2 -27 3286 3115 285 295 170 9 chr1 38436787 38436899 -243756765 - MIR SINE MIR -130 132 3 764 206 14 7 chr1 38437593 38437739 -243755925 + FRAM SINE Alu 1 146 -30 1011 155 0 6 chr1 38438485 38438646 -243755018 - AluJ SINE Alu -26 286 127 264 156 0 0 chr1 38438673 38438718 -243754946 - AluJ SINE Alu -173 129 85 413 301 54 42 chr1 38438729 38439137 -243754527 + L1M4 LINE L1 1288 1700 -4842 423 0 0 0 chr1 38439168 38439215 -243754449 + (CA)n Simple_repeat Simple_repeat 2 48 0 435 239 0 94 chr1 38439220 38439379 -243754285 + L1M4 LINE L1 1942 2085 -4740 261 349 43 59 chr1 38439546 38439699 -243753965 + L2 LINE L2 2716 2870 -402 321 89 0 0 chr1 38439699 38439744 -243753920 + (CA)n Simple_repeat Simple_repeat 2 46 0 261 349 43 59 chr1 38439744 38439919 -243753745 + L2 LINE L2 2870 3036 -236 1166 309 94 29 chr1 38439919 38440440 -243753224 + LTR67 LTR ERVL 3 557 0 261 349 43 59 chr1 38440440 38440465 -243753199 + L2 LINE L2 3036 3060 -212 287 292 54 65 chr1 38440579 38440747 -243752917 + L2 LINE L2 3145 3310 -3 16374 126 22 10 chr1 38440834 38443110 -243750554 + L1PA11 LINE L1 2605 4935 -1239 2342 103 0 3 chr1 38443110 38443421 -243750243 - AluY SINE Alu -1 310 1 16374 126 22 10 chr1 38443421 38444677 -243748987 + L1PA11 LINE L1 4935 6174 0 328 336 67 0 chr1 38444689 38444808 -243748856 + L3 LINE CR1 359 485 -1092 1733 214 45 24 chr1 38444975 38445400 -243748264 + MER63B DNA MER1_type 2 435 -1 784 274 68 28 chr1 38445550 38445798 -243747866 - MIR SINE MIR -3 259 2 1677 76 0 0 chr1 38446111 38446322 -243747342 + AluSx SINE Alu 63 273 -39 1914 170 20 12 chr1 38446634 38446975 -243746689 + MER2 DNA MER2_type 1 344 0 207 327 18 62 chr1 38447128 38447241 -243746423 + L2 LINE L2 3116 3223 -49 590 299 37 25 chr1 38448278 38448522 -243745142 - MIR SINE MIR -10 252 6 2069 108 0 3 chr1 38448758 38449055 -243744609 + AluSg SINE Alu 1 296 -14 425 273 43 56 chr1 38449390 38449551 -243744113 - MER5A DNA MER1_type -1 188 30 592 245 184 22 chr1 38449794 38450072 -243743592 + MLT1K LTR MaLR 208 530 -58 401 372 62 48 chr1 38451677 38452023 -243741641 - L1ME3A LINE L1 -230 5940 5589 656 186 45 62 chr1 38452374 38452551 -243741113 - MER5B DNA MER1_type 0 178 5 333 312 145 0 chr1 38453172 38453310 -243740354 - MIR SINE MIR -7 255 98 756 255 182 38 chr1 38453579 38453947 -243739717 - L2 LINE L2 -1 3312 2892 209 344 0 55 chr1 38453958 38454086 -243739578 + L2 LINE L2 2944 3064 -208 783 231 64 15 chr1 38455224 38455427 -243738237 - L2 LINE L2 -1 3312 3100 635 279 50 41 chr1 38455725 38456066 -243737598 + L1MEd LINE L1 561 904 -5215 685 311 98 3 chr1 38456118 38456465 -243737199 - L2 LINE L2 -250 3063 2691 1642 120 8 0 chr1 38456469 38456719 -243736945 + AluSx SINE Alu 61 312 0 664 195 0 8 chr1 38456729 38456857 -243736807 + L1PA13 LINE L1 6032 6158 -5 913 278 121 3 chr1 38457802 38458158 -243735506 - L2 LINE L2 -1202 2112 1715 1165 126 6 0 chr1 38458589 38458780 -243734884 + AluSg/x SINE Alu 115 306 0 532 264 90 0 chr1 38458871 38459038 -243734626 - MIR SINE MIR 0 262 81 287 286 19 76 chr1 38459055 38459160 -243734504 - MIR SINE MIR -157 105 7 296 310 126 35 chr1 38459506 38459737 -243733927 + MIR SINE MIR 8 254 -8 304 322 130 29 chr1 38460065 38460273 -243733391 + L2 LINE L2 2678 2906 -408 348 230 0 92 chr1 38460295 38460382 -243733282 + L2 LINE L2 3203 3281 -32 466 223 45 9 chr1 38461421 38461533 -243732131 - MIR SINE MIR -112 150 35 1528 169 49 3 chr1 38461643 38461927 -243731737 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr1 38461934 38461956 -243731708 + AT_rich Low_complexity Low_complexity 1 22 0 587 238 77 0 chr1 38462027 38462170 -243731494 - MIR3 SINE MIR -10 198 45 252 296 49 12 chr1 38463243 38463324 -243730340 - L2 LINE L2 -18 3295 3212 183 219 0 0 chr1 38463330 38463362 -243730302 + MIR SINE MIR 210 241 -21 230 246 16 33 chr1 38464205 38464266 -243729398 - L2 LINE L2 -23 3249 3190 2051 127 0 13 chr1 38464270 38464585 -243729079 + AluSx SINE Alu 1 311 -1 2111 92 10 3 chr1 38464691 38464984 -243728680 + AluSg SINE Alu 1 295 -15 619 287 13 0 chr1 38465535 38465692 -243727972 + L3 LINE CR1 1347 1505 -72 414 79 0 0 chr1 38466798 38466861 -243726803 + (CAG)n Simple_repeat Simple_repeat 1 63 0 339 192 356 0 chr1 38466862 38466897 -243726767 + MER5A DNA MER1_type 43 64 -125 2170 103 13 0 chr1 38466897 38467199 -243726465 + AluSc SINE Alu 1 306 -3 339 192 356 0 chr1 38467199 38467267 -243726397 + MER5A DNA MER1_type 64 183 -6 258 237 17 0 chr1 38467398 38467457 -243726207 + MLT1K LTR MaLR 529 588 0 1576 149 43 0 chr1 38467666 38467947 -243725717 - L1MA7 LINE L1 -5 6286 5994 1632 164 116 3 chr1 38468326 38468637 -243725027 - MER7A DNA MER2_type -1 345 2 1042 182 0 0 chr1 38469628 38469804 -243723860 + MER58A DNA MER1_type 49 224 0 2305 78 7 3 chr1 38469877 38470173 -243723491 + THE1A LTR MaLR 59 355 0 302 267 104 79 chr1 38470397 38470777 -243722887 - MLT1G LTR MaLR -4 577 16 2054 54 8 8 chr1 38470801 38471062 -243722602 + AluY SINE Alu 37 297 -14 273 98 0 0 chr1 38471704 38471745 -243721919 + (CA)n Simple_repeat Simple_repeat 2 42 0 191 299 198 14 chr1 38472508 38472725 -243720939 + L2 LINE L2 2360 2616 -698 230 372 53 0 chr1 38472740 38472834 -243720830 + L2 LINE L2 3212 3310 -3 252 317 81 16 chr1 38472883 38473006 -243720658 + MIR SINE MIR 75 205 -57 924 83 0 0 chr1 38473454 38473575 -243720089 + AluSg/x SINE Alu 171 291 -19 1369 290 65 8 chr1 38473869 38474362 -243719302 - LTR33 LTR ERVL 0 521 1 803 322 51 34 chr1 38474687 38475454 -243718210 - ERVL LTR ERVL -505 5259 4415 254 293 53 0 chr1 38475777 38475852 -243717812 - ERVL LTR ERVL -4321 1443 1365 369 43 0 0 chr1 38476630 38476677 -243716987 + (GA)n Simple_repeat Simple_repeat 1 47 0 449 185 109 0 chr1 38476749 38476841 -243716823 + MIR SINE MIR 45 146 -62 509 228 7 0 chr1 38477197 38477333 -243716331 + CT-rich Low_complexity Low_complexity 4 140 0 246 281 67 74 chr1 38477355 38477490 -243716174 - L2 LINE L2 -32 3240 3107 340 185 54 54 chr1 38477766 38477858 -243715806 + MLT1I LTR MaLR 40 131 -278 685 168 44 84 chr1 38477917 38478120 -243715544 + MER106B DNA MER1_type 397 591 -468 2117 102 0 0 chr1 38478145 38478477 -243715187 - AluSg SINE Alu 0 332 1 622 154 73 0 chr1 38478487 38478610 -243715054 - L1MB3 LINE L1 -2 6181 6050 398 274 45 45 chr1 38478633 38478812 -243714852 + MLT1J2 LTR MaLR 272 450 0 270 271 104 31 chr1 38481437 38481533 -243712131 + L2 LINE L2 3168 3270 -2 183 375 22 92 chr1 38481672 38481856 -243711808 + L2 LINE L2 3005 3175 -97 21 36 0 0 chr1 38482104 38482132 -243711532 + AT_rich Low_complexity Low_complexity 1 28 0 230 180 16 0 chr1 38482628 38482689 -243710975 + (TGAA)n Simple_repeat Simple_repeat 1 62 0 262 280 0 13 chr1 38482707 38482782 -243710882 + (TGAA)n Simple_repeat Simple_repeat 2 75 0 326 241 18 0 chr1 38482806 38482918 -243710746 + (TGAA)n Simple_repeat Simple_repeat 4 117 0 327 297 28 50 chr1 38483189 38483371 -243710293 - MER5B DNA MER1_type 0 178 1 288 0 0 0 chr1 38483502 38483534 -243710130 + (CA)n Simple_repeat Simple_repeat 2 33 0 923 231 20 0 chr1 38485041 38485240 -243708424 + MIR SINE MIR 5 207 -55 407 267 87 7 chr1 38485240 38485390 -243708274 - LTR33 LTR ERVL -359 162 1 247 261 46 0 chr1 38485476 38485541 -243708123 + MIR SINE MIR 193 260 -2 622 277 36 31 chr1 38485647 38485871 -243707793 + L2 LINE L2 2835 3059 -254 402 235 25 25 chr1 38485871 38485990 -243707674 - LTR33 LTR ERVL 0 521 403 718 266 5 22 chr1 38486059 38486243 -243707421 - LTR33 LTR ERVL -302 219 39 25 51 0 0 chr1 38486337 38486376 -243707288 + AT_rich Low_complexity Low_complexity 1 39 0 2549 58 0 0 chr1 38486388 38486697 -243706967 + AluY SINE Alu 1 309 -2 357 330 0 52 chr1 38486715 38486830 -243706834 + L2 LINE L2 3164 3272 0 666 302 21 92 chr1 38487207 38487872 -243705792 + L2 LINE L2 2656 3270 -2 188 67 33 0 chr1 38487873 38487903 -243705761 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 184 256 12 49 chr1 38488180 38488262 -243705402 - MIR SINE MIR 0 262 184 * 254 319 14 0 chr1 38488258 38488327 -243705337 - MIR SINE MIR -185 77 8 233 326 77 22 chr1 38489285 38489466 -243704198 + L2 LINE L2 2652 2842 -472 1342 239 117 18 chr1 38489641 38490084 -243703580 - MLT1D LTR MaLR 0 505 19 338 220 347 0 chr1 38490424 38490597 -243703067 + MIR SINE MIR 20 252 -10 1092 167 22 57 chr1 38491546 38491773 -243701891 + MER20 DNA MER1_type 1 219 0 1694 222 106 58 chr1 38492638 38493155 -243700509 - MLT1F LTR MaLR 0 542 1 257 333 11 11 chr1 38493217 38493304 -243700360 + L2 LINE L2 3185 3271 -1 273 140 0 0 chr1 38493307 38493364 -243700300 + (TGAA)n Simple_repeat Simple_repeat 4 60 0 392 233 150 52 chr1 38495241 38495434 -243698230 - L2 LINE L2 -1 3271 3060 589 157 104 22 chr1 38495780 38495914 -243697750 + L1MB3 LINE L1 6032 6176 -7 1459 141 122 11 chr1 38495935 38496197 -243697467 - AluSx SINE Alu -21 291 1 281 294 49 49 chr1 38496219 38496321 -243697343 - L2 LINE L2 -32 3240 3139 336 294 151 8 chr1 38496331 38496450 -243697214 + L2 LINE L2 3010 3145 -127 1695 174 23 0 chr1 38496570 38496869 -243696795 + AluSx SINE Alu 1 306 -6 186 191 0 0 chr1 38496932 38496974 -243696690 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 188 342 186 18 chr1 38497065 38497275 -243696389 - L2 LINE L2 -355 2959 2786 2205 111 0 0 chr1 38497275 38497573 -243696091 - AluSg SINE Alu -12 298 1 188 342 186 18 chr1 38497573 38497760 -243695904 - L2 LINE L2 -528 2786 2495 507 229 117 45 chr1 38497772 38497951 -243695713 - L2 LINE L2 0 3313 3122 * 930 210 0 0 chr1 38497946 38498122 -243695542 + MIR SINE MIR 86 261 -1 333 351 192 3 chr1 38498175 38498516 -243695148 - L2 LINE L2 -229 3084 2689 590 226 77 51 chr1 38498534 38498768 -243694896 + MLT1H LTR MaLR 15 254 -295 * 1975 213 53 28 chr1 38498761 38499255 -243694409 + MER74B LTR ERVL 50 555 -67 373 260 40 10 chr1 38499306 38499406 -243694258 + MLT1H LTR MaLR 245 347 -202 1552 156 0 66 chr1 38499472 38499563 -243694101 - LTR69 LTR ERVL -4 584 489 1917 112 10 23 chr1 38499563 38499866 -243693798 + AluSx SINE Alu 1 299 -13 1552 156 0 66 chr1 38499866 38500063 -243693601 - LTR69 LTR ERVL -99 489 315 2118 259 137 79 chr1 38500063 38501289 -243692375 - L2 LINE L2 -987 2327 1021 1779 144 82 25 chr1 38501289 38501644 -243692020 + THE1C LTR MaLR 1 375 0 2118 259 137 79 chr1 38501644 38501700 -243691964 - L2 LINE L2 -2293 1021 970 2778 99 0 0 chr1 38503615 38503979 -243689685 + THE1B LTR MaLR 1 364 0 232 274 39 59 chr1 38504898 38505000 -243688664 + L2 LINE L2 3208 3307 -6 1486 149 119 75 chr1 38505303 38505732 -243687932 - LTR7 LTR ERV1 -2 448 1 2453 98 48 13 chr1 38505732 38506111 -243687553 - HERVH LTR ERV1 0 7713 7322 1431 111 23 9 chr1 38506109 38506326 -243687338 - HERVH LTR ERV1 -1894 5819 5600 * 4268 155 1 3 chr1 38506330 38506989 -243686675 - HERVH LTR ERV1 -2567 5146 4489 3433 110 6 6 chr1 38506992 38507494 -243686170 - HERVH LTR ERV1 -3720 3993 3492 863 162 20 0 chr1 38507484 38507632 -243686032 - HERVH LTR ERV1 -4423 3290 3140 * 16613 93 24 12 chr1 38507626 38510057 -243683607 - HERVH LTR ERV1 -4726 2987 404 286 29 0 0 chr1 38510058 38510092 -243683572 - LTR7 LTR ERV1 -416 34 1 343 324 10 0 chr1 38510093 38510195 -243683469 - MIR SINE MIR -82 180 78 2522 219 66 57 chr1 38510334 38510626 -243683038 - MER72 LTR ERV1 -2 720 432 2669 95 17 6 chr1 38510626 38510984 -243682680 - THE1B LTR MaLR -2 362 1 2522 219 66 57 chr1 38510984 38511120 -243682544 - MER72 LTR ERV1 -290 432 299 2223 105 0 0 chr1 38511120 38511424 -243682240 - AluSq SINE Alu -9 304 1 2522 219 66 57 chr1 38511424 38511708 -243681956 - MER72 LTR ERV1 -423 299 1 420 263 90 15 chr1 38512677 38512810 -243680854 - MIR SINE MIR -108 154 12 303 28 0 0 chr1 38513495 38513531 -243680133 + (CA)n Simple_repeat Simple_repeat 2 37 0 190 333 0 29 chr1 38513938 38514007 -243679657 + L2 LINE L2 2693 2759 -555 481 276 55 0 chr1 38514053 38514180 -243679484 + MIR SINE MIR 48 181 -81 195 237 0 0 chr1 38514334 38514372 -243679292 + L2 LINE L2 3273 3310 -3 216 0 0 0 chr1 38514800 38514824 -243678840 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 624 202 9 0 chr1 38514834 38514943 -243678721 - FLAM_A SINE Alu -32 110 1 1947 147 3 3 chr1 38515116 38515429 -243678235 - AluSq SINE Alu 0 313 1 708 292 170 18 chr1 38515475 38515858 -243677806 + L2 LINE L2 2537 2977 -337 196 232 145 0 chr1 38516050 38516119 -243677545 - L2 LINE L2 -188 3084 3006 497 269 42 24 chr1 38516367 38516534 -243677130 + MIR SINE MIR 23 192 -70 477 272 69 139 chr1 38517373 38517854 -243675810 + L2 LINE L2 2821 3267 -5 650 261 22 0 chr1 38517922 38518060 -243675604 - MIR SINE MIR -114 148 8 694 225 12 0 chr1 38519807 38519967 -243673697 - MER103 DNA DNA -3 163 2 206 304 120 22 chr1 38520199 38520291 -243673373 - MIR SINE MIR -104 158 58 437 293 46 46 chr1 38520302 38520476 -243673188 + MIR SINE MIR 81 254 -8 355 286 135 28 chr1 38520492 38520744 -243672920 - L3 LINE CR1 -108 1469 1191 772 265 85 9 chr1 38521179 38521402 -243672262 - MIR SINE MIR -22 240 1 184 224 86 17 chr1 38521703 38521761 -243671903 - L2 LINE L2 -64 3249 3188 206 123 0 140 chr1 38522292 38522349 -243671315 + L2 LINE L2 3005 3053 -219 613 234 104 43 chr1 38522386 38522617 -243671047 + MIR SINE MIR 4 248 -14 192 303 15 15 chr1 38523158 38523224 -243670440 + MIR SINE MIR 34 99 -163 832 228 6 0 chr1 38523292 38523454 -243670210 + AluJb SINE Alu 133 295 -17 677 223 4 19 chr1 38523462 38523724 -243669940 + GA-rich Low_complexity Low_complexity 1 258 0 188 290 81 0 chr1 38524152 38524214 -243669450 - MIR SINE MIR -82 180 114 1841 162 3 0 chr1 38524465 38524767 -243668897 + AluSx SINE Alu 1 303 -9 2124 110 3 10 chr1 38524999 38525307 -243668357 - AluSg SINE Alu -4 306 1 334 293 100 61 chr1 38526396 38526625 -243667039 + L2 LINE L2 2810 3047 -225 357 24 0 0 chr1 38527293 38527335 -243666329 + (CA)n Simple_repeat Simple_repeat 1 42 0 203 264 135 98 chr1 38527891 38527930 -243665734 - MIR3 SINE MIR -19 189 153 718 292 10 5 chr1 38527930 38528122 -243665542 + MER117 DNA MER1_type 4 196 -1 203 264 135 98 chr1 38528122 38528245 -243665419 - MIR3 SINE MIR -55 153 21 240 258 13 142 chr1 38528817 38529050 -243664614 - L2 LINE L2 -210 3062 2860 433 292 180 0 chr1 38529132 38529293 -243664371 - MER91A DNA MER1_type -6 190 1 307 245 75 21 chr1 38529374 38529468 -243664196 - MER5A DNA MER1_type -77 112 14 253 304 135 83 chr1 38529592 38529881 -243663783 - L2 LINE L2 -31 3241 2938 1143 205 9 26 chr1 38531738 38531766 -243661898 + L1MC4 LINE L1 6663 6690 -1352 2013 86 72 0 chr1 38531766 38532045 -243661619 + AluSq SINE Alu 1 299 -14 1143 205 9 26 chr1 38532045 38532245 -243661419 + L1MC4 LINE L1 6690 6887 -1155 374 243 164 13 chr1 38532397 38532549 -243661115 + MIR SINE MIR 8 182 -80 4378 104 28 26 chr1 38533056 38533317 -243660347 + MER39B LTR ERV1 1 260 -393 1868 158 3 6 chr1 38533317 38533628 -243660036 + AluJb SINE Alu 1 310 -2 4378 104 28 26 chr1 38533628 38534018 -243659646 + MER39B LTR ERV1 260 653 0 344 158 0 14 chr1 38534680 38534746 -243658918 - Alu SINE Alu -251 51 7 851 258 34 61 chr1 38534834 38535247 -243658417 + MLT1I LTR MaLR 38 409 0 576 270 17 82 chr1 38535247 38535293 -243658371 + L2 LINE L2 2186 2233 -1081 2254 105 0 0 chr1 38535293 38535599 -243658065 - AluSx SINE Alu -6 306 1 576 270 17 82 chr1 38535599 38535785 -243657879 + L2 LINE L2 2233 2403 -911 339 308 246 20 chr1 38535813 38536008 -243657656 + L2 LINE L2 2578 2816 -498 1139 209 23 119 chr1 38536046 38536676 -243656988 + MLT2B3 LTR ERVL 6 518 -2 1458 172 12 120 chr1 38537169 38537538 -243656126 + MLT1A1 LTR MaLR 3 326 -39 1984 126 9 9 chr1 38537538 38537855 -243655809 - L1PA13 LINE L1 -7 6156 5840 1458 172 12 120 chr1 38537855 38537892 -243655772 + MLT1A1 LTR MaLR 326 365 0 351 243 136 0 chr1 38539441 38539544 -243654120 + MIR SINE MIR 43 159 -103 363 248 0 53 chr1 38539547 38539660 -243654004 - LTR33A LTR ERVL 0 523 417 333 343 22 17 chr1 38539788 38539969 -243653695 - MLT2E LTR ERVL -414 214 33 371 267 19 19 chr1 38540043 38540148 -243653516 + MIR SINE MIR 157 261 -1 270 275 0 25 chr1 38541355 38541435 -243652229 - L2 LINE L2 -76 3237 3160 259 276 13 0 chr1 38541513 38541599 -243652065 - L2 LINE L2 -328 2985 2899 186 227 0 0 chr1 38541752 38541796 -243651868 - L2 LINE L2 -357 2957 2914 3769 171 92 76 chr1 38542251 38542336 -243651328 - L1MD2 LINE L1 -3 6356 6274 2355 116 33 30 chr1 38542336 38542699 -243650965 + THE1B LTR MaLR 1 364 0 3769 171 92 76 chr1 38542699 38543751 -243649913 - L1MD2 LINE L1 -85 6274 5200 726 276 75 67 chr1 38543743 38544328 -243649336 - L1MC4a LINE L1 -345 5817 5307 * 1444 158 65 24 chr1 38544328 38544620 -243649044 - THE1C LTR MaLR 0 375 72 3134 188 56 65 chr1 38544621 38546007 -243647657 + MER52A LTR ERV1 17 1278 0 382 141 12 82 chr1 38546007 38546080 -243647584 - THE1C LTR MaLR -295 69 3 418 292 69 0 chr1 38546128 38546330 -243647334 - L1MC4a LINE L1 -868 5278 5063 580 270 153 5 chr1 38546350 38546546 -243647118 + MIR SINE MIR 11 235 -27 759 252 79 57 chr1 38546576 38547088 -243646576 - L1MC4a LINE L1 -1109 5037 4538 306 0 0 0 chr1 38547088 38547122 -243646542 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2028 112 4 0 chr1 38547126 38547404 -243646260 - AluSq SINE Alu -34 279 1 759 252 79 57 chr1 38547404 38547556 -243646108 - L1MC4a LINE L1 -1610 4536 4353 * 2403 292 46 50 chr1 38547530 38548169 -243645495 - L1M4 LINE L1 -1477 4669 4029 2424 57 0 3 chr1 38548169 38548469 -243645195 + AluY SINE Alu 1 299 -12 2403 292 46 50 chr1 38548469 38548607 -243645057 - L1M4 LINE L1 -2117 4029 3892 1630 160 216 17 chr1 38548607 38548964 -243644700 + MSTA LTR MaLR 1 428 0 2403 292 46 50 chr1 38548964 38549796 -243643868 - L1M4 LINE L1 -2254 3892 3063 1280 157 19 5 chr1 38549796 38550012 -243643652 + MER20 DNA MER1_type 1 219 0 2403 292 46 50 chr1 38550012 38550113 -243643551 - L1M4 LINE L1 -3083 3063 2963 563 207 216 29 chr1 38550116 38550324 -243643340 - L1ME1 LINE L1 -20 6146 5900 1206 178 5 5 chr1 38550324 38550537 -243643127 - AluJo SINE Alu -22 290 78 2255 200 66 28 chr1 38550567 38551141 -243642523 - L1ME1 LINE L1 -281 5885 5290 2854 222 48 30 chr1 38551158 38552248 -243641416 - L1ME1 LINE L1 -4 6162 5058 1739 141 57 42 chr1 38552246 38552580 -243641084 - MSTA-int LTR MaLR -1017 634 296 * 1081 127 55 17 chr1 38552581 38552762 -243640902 - MSTA LTR MaLR -240 188 1 7750 165 39 2 chr1 38552762 38554032 -243639632 - MSTA-int LTR MaLR 0 1651 334 1706 158 50 19 chr1 38554032 38554379 -243639285 - MSTA LTR MaLR -75 357 7 358 241 43 26 chr1 38554411 38554527 -243639137 + MIR SINE MIR 114 231 -31 214 298 0 0 chr1 38554557 38554604 -243639060 + L2 LINE L2 3231 3277 -36 317 333 32 0 chr1 38554785 38554911 -243638753 + L2 LINE L2 3125 3254 -18 290 179 0 64 chr1 38555373 38555451 -243638213 + L1MB7 LINE L1 6112 6184 0 295 261 133 8 chr1 38555973 38556099 -243637565 - MIR SINE MIR -54 208 63 1763 157 0 17 chr1 38556655 38556948 -243636716 + AluJo SINE Alu 1 288 -24 582 275 57 10 chr1 38557193 38557386 -243636278 + MIR SINE MIR 37 238 -24 243 310 130 0 chr1 38558241 38558341 -243635323 + MIR SINE MIR 136 248 -14 189 222 0 74 chr1 38558310 38558364 -243635300 + L2 LINE L2 3263 3312 -1 * 709 265 19 14 chr1 38558776 38558987 -243634677 - MLT1G LTR MaLR -347 243 32 1781 147 42 7 chr1 38558994 38559280 -243634384 - MLT1C LTR MaLR -27 440 145 1324 167 32 39 chr1 38559464 38559745 -243633919 + L1MB4 LINE L1 5902 6180 0 542 261 45 40 chr1 38559820 38559996 -243633668 - MIR SINE MIR -41 221 45 225 348 116 13 chr1 38560230 38560385 -243633279 + MIR SINE MIR 66 236 -26 3681 196 17 35 chr1 38560529 38561395 -243632269 - L1ME1 LINE L1 -5 6161 5319 473 208 119 0 chr1 38561395 38561496 -243632168 + MIR SINE MIR 72 184 -78 207 0 0 0 chr1 38561688 38561711 -243631953 + (CAGAG)n Simple_repeat Simple_repeat 3 25 0 420 216 144 18 chr1 38562305 38562472 -243631192 + MER5A DNA MER1_type 1 188 -1 462 281 131 50 chr1 38562550 38562771 -243630893 + MIR SINE MIR 10 248 -14 406 285 62 21 chr1 38562787 38562931 -243630733 - MER91B DNA MER1_type -5 185 36 494 301 27 7 chr1 38564023 38564169 -243629495 + MIR SINE MIR 7 155 -107 2162 145 39 26 chr1 38564217 38564584 -243629080 + L1MB3 LINE L1 5763 6137 -68 2044 128 7 0 chr1 38564584 38564882 -243628782 + AluSx SINE Alu 1 300 -12 2162 145 39 26 chr1 38564882 38564952 -243628712 + L1MB3 LINE L1 6137 6205 0 356 299 19 19 chr1 38565486 38565593 -243628071 + MIR SINE MIR 155 261 -1 289 246 15 0 chr1 38565692 38565757 -243627907 - MIR SINE MIR -115 147 82 296 330 21 0 chr1 38566496 38566593 -243627071 - MER91A DNA MER1_type -41 155 57 240 224 271 0 chr1 38566891 38566976 -243626688 + MIR SINE MIR 34 141 -67 348 306 43 11 chr1 38567837 38568029 -243625635 + LTR16A LTR ERVL 2 196 -254 443 275 135 34 chr1 38568281 38568488 -243625176 - L2 LINE L2 -218 3054 2827 2056 167 7 52 chr1 38568579 38568987 -243624677 - MLT1B LTR MaLR 0 390 1 306 234 196 9 chr1 38569576 38569683 -243623981 + MIR3 SINE MIR 15 141 -67 1046 256 122 48 chr1 38569803 38570236 -243623428 + L2 LINE L2 2845 3309 -4 265 321 24 0 chr1 38570586 38570670 -243622994 + MLT1K LTR MaLR 494 579 -9 1298 165 139 11 chr1 38570900 38571167 -243622497 - AluJb SINE Alu -11 301 1 187 242 10 131 chr1 38571179 38571278 -243622386 + L2 LINE L2 3148 3234 -38 423 217 93 39 chr1 38571898 38572027 -243621637 - MIR3 SINE MIR -58 150 15 193 258 97 0 chr1 38572250 38572312 -243621352 - L2 LINE L2 -1495 1819 1752 1009 249 14 5 chr1 38572424 38572637 -243621027 - MER58A DNA MER1_type 0 224 10 209 231 0 19 chr1 38573849 38573901 -243619763 - MIR SINE MIR -107 155 105 547 278 70 59 chr1 38574046 38574319 -243619345 - Charlie8 DNA MER1_type -2141 276 1 439 291 35 7 chr1 38574341 38574482 -243619182 - MIR SINE MIR -66 196 52 1176 246 81 54 chr1 38574936 38575380 -243618284 + L3 LINE CR1 486 941 -636 274 270 180 22 chr1 38575403 38575581 -243618083 + L1ME4a LINE L1 5693 5898 -223 297 246 127 27 chr1 38575743 38575853 -243617811 + L3 LINE CR1 968 1088 -489 422 290 55 75 chr1 38575890 38575931 -243617733 - MIR SINE MIR -10 252 212 2034 117 3 3 chr1 38575931 38576231 -243617433 - AluSx SINE Alu -12 300 1 422 290 55 75 chr1 38576231 38576389 -243617275 - MIR SINE MIR -50 212 57 376 277 105 50 chr1 38577077 38577315 -243616349 + L3 LINE CR1 1265 1515 -62 230 314 41 41 chr1 38577342 38577463 -243616201 + L2 LINE L2 3150 3270 -2 182 304 139 25 chr1 38577443 38577522 -243616142 + L3 LINE CR1 1487 1574 -3 * 262 188 0 62 chr1 38577574 38577638 -243616026 - MER69 DNA AcHobo -91 2435 2376 268 275 40 27 chr1 38577933 38578082 -243615582 - L1ME LINE L1 -349 5772 5622 536 296 109 30 chr1 38579384 38579614 -243614050 - MIR SINE MIR -13 249 2 1407 160 38 48 chr1 38580047 38580086 -243613578 - MER33 DNA MER1_type -2273 312 274 2193 83 10 3 chr1 38580086 38580386 -243613278 - AluSx SINE Alu -10 302 1 1407 160 38 48 chr1 38580386 38580659 -243613005 - MER33 DNA MER1_type -2311 274 3 2207 92 0 10 chr1 38580786 38581091 -243612573 + AluSx SINE Alu 5 306 -6 869 236 121 43 chr1 38581287 38581609 -243612055 - MER7A DNA MER2_type 0 346 2 503 303 98 41 chr1 38581642 38581886 -243611778 - MIR SINE MIR 0 262 5 308 323 25 38 chr1 38582157 38582315 -243611349 - L2 LINE L2 -540 2774 2619 713 253 40 8 chr1 38582886 38583088 -243610576 + MLT1L LTR MaLR 382 615 0 964 280 85 33 chr1 38583466 38583950 -243609714 - MLT1J LTR MaLR -2 473 2 188 318 206 29 chr1 38584344 38584693 -243608971 + L2 LINE L2 1706 2116 -1198 469 204 39 0 chr1 38584765 38584868 -243608796 + MIR SINE MIR 47 153 -109 790 242 161 51 chr1 38584884 38585276 -243608388 - MLT1J2 LTR MaLR 0 450 16 180 302 104 10 chr1 38585281 38585377 -243608287 + MIR SINE MIR 156 260 -2 2023 111 12 49 chr1 38586244 38586568 -243607096 - AluSx SINE Alu 0 312 1 268 287 47 118 chr1 38588205 38588543 -243605121 + L2 LINE L2 2915 3228 -44 787 282 26 18 chr1 38588566 38588793 -243604871 + MIR SINE MIR 3 231 -31 361 250 10 29 chr1 38588994 38589098 -243604566 + MIR SINE MIR 12 113 -149 304 299 82 22 chr1 38589164 38589298 -243604366 - L2 LINE L2 -199 3073 2932 253 254 42 14 chr1 38589431 38589502 -243604162 + L2 LINE L2 3241 3313 0 567 299 69 23 chr1 38590567 38590784 -243602880 + MIR SINE MIR 34 260 -2 3389 49 2 7 chr1 38590852 38591279 -243602385 - L1PA8 LINE L1 -1 6171 5747 268 268 52 21 chr1 38591546 38591643 -243602021 - MER5B DNA MER1_type -19 159 60 485 238 66 48 chr1 38591711 38591947 -243601717 - MLT1J LTR MaLR -8 503 224 455 281 30 7 chr1 38591973 38592108 -243601556 - MLT1J LTR MaLR -341 170 33 487 278 127 24 chr1 38592265 38592477 -243601187 + MIR SINE MIR 23 256 -6 354 222 55 3 chr1 38592988 38593084 -243600580 + MER5A DNA MER1_type 9 98 -80 206 339 0 0 chr1 38593467 38593529 -243600135 + MIR SINE MIR 201 262 0 * 249 254 45 0 chr1 38593521 38593588 -243600076 + MIR SINE MIR 68 137 -71 202 351 95 22 chr1 38593692 38593914 -243599750 - L2 LINE L2 -341 2973 2736 330 331 47 1 chr1 38594127 38594253 -243599411 - L2 LINE L2 0 3313 3184 346 269 150 31 chr1 38595343 38595503 -243598161 + L1ME LINE L1 5576 5754 -367 631 212 224 29 chr1 38595520 38595761 -243597903 + LTR50 LTR ERVL 1 288 -507 673 214 93 14 chr1 38595880 38596095 -243597569 + LTR33A LTR ERVL 292 523 0 453 286 94 36 chr1 38596095 38596566 -243597098 + L1ME4a LINE L1 5441 5963 -207 674 125 9 0 chr1 38596703 38596815 -243596849 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 1133 144 11 6 chr1 38596817 38596991 -243596673 - AluSg/x SINE Alu -1 311 137 269 26 26 0 chr1 38597261 38597299 -243596365 + (TG)n Simple_repeat Simple_repeat 1 39 0 475 236 28 14 chr1 38597302 38597446 -243596218 + L1ME4a LINE L1 5965 6110 -11 695 296 72 23 chr1 38597701 38598171 -243595493 + L1MC4a LINE L1 4886 5378 -768 424 248 0 83 chr1 38598181 38598338 -243595326 + L1ME3 LINE L1 6014 6157 -5 24 32 0 0 chr1 38598623 38598654 -243595010 + AT_rich Low_complexity Low_complexity 1 31 0 406 178 33 0 chr1 38598787 38598877 -243594787 - MER117 DNA MER1_type -50 147 55 345 203 25 25 chr1 38598971 38599050 -243594614 - MIR3 SINE MIR -54 154 76 453 295 167 5 chr1 38599829 38600039 -243593625 - MIR SINE MIR 0 262 19 456 321 6 19 chr1 38600070 38600229 -243593435 + MER5A DNA MER1_type 33 189 0 325 252 87 0 chr1 38600269 38600372 -243593292 - MLT1G LTR MaLR 0 590 479 * 782 234 29 0 chr1 38600369 38600540 -243593124 - MLT1G1 LTR MaLR -418 177 2 808 275 74 30 chr1 38600937 38601301 -243592363 + L1MC4a LINE L1 5549 5928 -1880 930 239 23 34 chr1 38601402 38601665 -243591999 - MIR SINE MIR 0 262 3 2246 122 7 0 chr1 38601729 38602033 -243591631 + AluSx SINE Alu 1 306 -6 227 279 22 34 chr1 38603833 38604012 -243589652 + (CA)n Simple_repeat Simple_repeat 1 177 0 938 299 130 15 chr1 38604299 38604975 -243588689 + L2 LINE L2 2396 3205 -108 844 171 36 99 chr1 38604975 38605197 -243588467 - MER3 DNA MER1_type -1 208 1 938 299 130 15 chr1 38605197 38605315 -243588349 + L2 LINE L2 3205 3308 -5 505 282 50 22 chr1 38605605 38605786 -243587878 + MIR SINE MIR 18 203 -59 2160 119 73 14 chr1 38606263 38606607 -243587057 - THE1B LTR MaLR 0 364 1 837 256 61 8 chr1 38606666 38606895 -243586769 + MIR SINE MIR 2 246 -16 2174 80 6 98 chr1 38606895 38607222 -243586442 - AluSg SINE Alu -13 297 1 837 256 61 8 chr1 38607222 38607238 -243586426 + MIR SINE MIR 246 260 -2 1672 187 199 2 chr1 38607957 38608379 -243585285 + MLT1D LTR MaLR 1 505 0 587 251 50 6 chr1 38608403 38608582 -243585082 - L2 LINE L2 -4 3309 3123 281 182 0 18 chr1 38608686 38608741 -243584923 - L2 LINE L2 -9 3263 3210 529 294 139 5 chr1 38608918 38609079 -243584585 - MIR SINE MIR -4 258 63 2177 127 0 0 chr1 38609079 38609370 -243584294 - AluSg SINE Alu -19 291 1 529 294 139 5 chr1 38609370 38609409 -243584255 - MIR SINE MIR -199 63 31 180 0 0 0 chr1 38609691 38609711 -243583953 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 221 312 13 0 chr1 38609711 38609788 -243583876 - L2 LINE L2 -13 3259 3182 208 271 197 8 chr1 38609911 38610033 -243583631 - L2 LINE L2 -260 3012 2868 2354 125 0 0 chr1 38611000 38611312 -243582352 + AluSx SINE Alu 1 312 0 950 255 9 9 chr1 38611448 38611664 -243582000 + MIR SINE MIR 47 262 0 207 189 0 0 chr1 38611777 38611830 -243581834 + (TA)n Simple_repeat Simple_repeat 2 54 0 189 298 144 29 chr1 38612002 38612106 -243581558 - MIR3 SINE MIR -9 199 84 734 181 43 53 chr1 38612841 38613029 -243580635 + MER5A DNA MER1_type 1 186 -3 523 242 38 25 chr1 38613388 38613545 -243580119 - MER5B DNA MER1_type 0 178 20 456 296 47 6 chr1 38613553 38613725 -243579939 - MIR SINE MIR -67 195 17 538 345 45 39 chr1 38614581 38614722 -243578942 - L2 LINE L2 -1 3271 3132 306 0 0 0 chr1 38614722 38614756 -243578908 + (CA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr1 38614755 38614784 -243578880 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 538 345 45 39 chr1 38614756 38614999 -243578665 - L2 LINE L2 -140 3132 2913 186 276 48 38 chr1 38616012 38616117 -243577547 + L2 LINE L2 2742 2847 -467 444 300 33 17 chr1 38616894 38617074 -243576590 - L2 LINE L2 0 3313 3131 1657 178 196 60 chr1 38617157 38617547 -243576117 + MLT1F1 LTR MaLR 1 469 -98 1226 192 30 15 chr1 38617547 38617818 -243575846 - ORSL DNA AcHobo 0 275 1 1657 178 196 60 chr1 38617818 38617906 -243575758 + MLT1F1 LTR MaLR 469 544 -23 297 261 235 17 chr1 38618018 38618137 -243575527 + MIR SINE MIR 98 242 -20 207 139 0 0 chr1 38618881 38618917 -243574747 + (CA)n Simple_repeat Simple_repeat 1 36 0 412 278 167 0 chr1 38619183 38619345 -243574319 - MIR SINE MIR -73 189 1 387 193 141 13 chr1 38619774 38619929 -243573735 + MIR SINE MIR 76 259 -3 539 164 217 13 chr1 38620231 38620383 -243573281 - L1MD3 LINE L1 0 7995 7813 429 88 0 0 chr1 38620657 38620725 -243572939 + L1PA5 LINE L1 6087 6154 0 378 263 81 0 chr1 38620725 38620824 -243572840 + MIR SINE MIR 22 128 -134 446 306 66 22 chr1 38621838 38622021 -243571643 + MIR SINE MIR 1 191 -71 617 270 88 5 chr1 38622058 38622262 -243571402 - Charlie8 DNA MER1_type -2196 221 1 1054 195 90 100 chr1 38622584 38622984 -243570680 + MSTD LTR MaLR 1 396 0 194 297 44 44 chr1 38622995 38623086 -243570578 - MIR SINE MIR -70 192 102 * 298 149 0 0 chr1 38623085 38623132 -243570532 - L2 LINE L2 -6 3307 3261 370 306 88 62 chr1 38623164 38623583 -243570081 - MLT1K LTR MaLR -18 570 141 1798 225 37 5 chr1 38623680 38624084 -243569580 - LTR16C LTR ERVL 0 491 75 385 257 53 20 chr1 38624838 38624987 -243568677 - MIR SINE MIR -55 153 45 791 148 136 12 chr1 38625160 38625322 -243568342 - MSTD LTR MaLR -214 182 1 377 319 85 48 chr1 38625586 38625727 -243567937 + L2 LINE L2 3008 3142 -171 378 0 0 0 chr1 38625727 38625769 -243567895 + (TG)n Simple_repeat Simple_repeat 2 43 0 377 319 85 48 chr1 38625769 38625922 -243567742 + L2 LINE L2 3142 3313 0 683 264 6 0 chr1 38625998 38626157 -243567507 + MIR SINE MIR 17 176 -86 3271 195 20 0 chr1 38626416 38627056 -243566608 - MER82 DNA MER2_type 0 653 1 341 305 34 0 chr1 38627301 38627419 -243566245 + L2 LINE L2 2930 3051 -221 334 190 50 60 chr1 38627591 38627691 -243565973 - L2 LINE L2 -2 3311 3213 191 254 17 17 chr1 38628103 38628162 -243565502 - MIR SINE MIR -10 252 194 500 235 140 12 chr1 38628177 38628347 -243565317 - MIR SINE MIR -21 241 43 1070 247 8 4 chr1 38629290 38629529 -243564135 + MIR SINE MIR 22 261 -1 579 295 80 21 chr1 38630566 38630803 -243562861 + MIR SINE MIR 12 262 0 206 347 65 42 chr1 38631786 38632002 -243561662 + MIR SINE MIR 31 251 -11 274 264 275 6 chr1 38632274 38632452 -243561212 + MIR SINE MIR 34 259 -3 353 292 117 15 chr1 38633517 38633654 -243560010 - L2 LINE L2 -1 3271 3121 310 317 92 14 chr1 38634453 38634595 -243559069 + MIR SINE MIR 29 181 -81 239 349 82 13 chr1 38636397 38636712 -243556952 + L2 LINE L2 2212 2548 -766 192 244 69 50 chr1 38636871 38637031 -243556633 + L2 LINE L2 2818 2980 -292 281 186 0 17 chr1 38637520 38637579 -243556085 - LTR16A1 LTR ERVL 0 457 400 584 171 90 0 chr1 38637785 38637896 -243555768 - LTR16A1 LTR ERVL -336 121 1 184 327 173 5 chr1 38638403 38638611 -243555053 + L2 LINE L2 604 846 -2468 766 300 208 15 chr1 38638634 38639417 -243554247 - L2 LINE L2 -20 3252 2315 3487 281 151 31 chr1 38639419 38641742 -243551922 + L2 LINE L2 600 3228 -85 2713 45 0 0 chr1 38641742 38642051 -243551613 + AluY SINE Alu 1 309 -2 3487 281 151 31 chr1 38642051 38642138 -243551526 + L2 LINE L2 3228 3303 -10 243 211 174 28 chr1 38642147 38642256 -243551408 - L2 LINE L2 -992 2322 2198 21 0 0 0 chr1 38642824 38642845 -243550819 + AT_rich Low_complexity Low_complexity 1 21 0 405 306 128 35 chr1 38643041 38643557 -243550107 - L2 LINE L2 -1063 2251 1688 457 347 8 0 chr1 38643770 38643894 -243549770 + L2 LINE L2 3138 3262 -10 1033 326 130 26 chr1 38643918 38644771 -243548893 + L2 LINE L2 1054 1995 -1319 382 251 52 52 chr1 38645031 38645242 -243548422 + MLT1K LTR MaLR 378 588 0 658 288 69 44 chr1 38645246 38645479 -243548185 + L2 LINE L2 2016 2261 -1053 3137 198 10 31 chr1 38645479 38645607 -243548057 - L1MB4 LINE L1 0 6180 6051 1608 111 134 15 chr1 38645607 38645869 -243547795 - AluSg SINE Alu -17 293 1 3137 198 10 31 chr1 38645869 38646422 -243547242 - L1MB4 LINE L1 -129 6051 5513 658 288 69 44 chr1 38646422 38646507 -243547157 + L2 LINE L2 2261 2342 -972 3698 55 4 0 chr1 38646722 38647176 -243546488 + L1PA8 LINE L1 5708 6163 -9 180 0 0 0 chr1 38647185 38647205 -243546459 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2054 112 16 0 chr1 38647213 38647517 -243546147 + L1PB2 LINE L1 5840 6148 -3 210 325 38 0 chr1 38647611 38647691 -243545973 + L2 LINE L2 2365 2447 -867 * 211 146 24 24 chr1 38647680 38647721 -243545943 + L3 LINE CR1 682 722 -855 3105 247 97 95 chr1 38648213 38649097 -243544567 - L2 LINE L2 0 3313 2432 2663 58 0 3 chr1 38649097 38649407 -243544257 - AluSc SINE Alu 0 309 1 3105 247 97 95 chr1 38649407 38649436 -243544228 - L2 LINE L2 -881 2432 2405 287 103 0 118 chr1 38649436 38649504 -243544160 - MER53 DNA DNA -129 60 1 3105 247 97 95 chr1 38649504 38650361 -243543303 - L2 LINE L2 -908 2405 1477 247 236 0 92 chr1 38651097 38651292 -243542372 + (CCA)n Simple_repeat Simple_repeat 3 179 0 206 305 0 26 chr1 38651327 38651478 -243542186 + (CCA)n Simple_repeat Simple_repeat 3 149 0 521 297 112 7 chr1 38651757 38652069 -243541595 - L2 LINE L2 -249 3064 2714 648 75 0 0 chr1 38652070 38652150 -243541514 + MADE1 DNA Mariner 1 80 0 1311 257 89 48 chr1 38652175 38653021 -243540643 + L1MC4a LINE L1 5039 5403 -743 810 275 269 7 chr1 38653115 38653562 -243540102 - L2 LINE L2 -1012 2302 1739 554 287 90 16 chr1 38653723 38653911 -243539753 + MIR SINE MIR 32 233 -29 451 209 45 18 chr1 38653964 38654074 -243539590 + MER94 DNA DNA 2 114 -20 575 204 84 76 chr1 38654316 38654541 -243539123 + L1MC4a LINE L1 5690 5916 -1892 366 270 124 15 chr1 38655992 38656129 -243537535 - MIR SINE MIR -98 164 13 467 185 169 79 chr1 38656406 38656595 -243537069 - L2 LINE L2 0 3313 3108 1086 165 0 0 chr1 38656599 38656769 -243536895 + AluJb SINE Alu 129 298 -14 538 253 41 20 chr1 38656799 38656945 -243536719 - L2 LINE L2 -240 3073 2925 301 245 338 0 chr1 38657002 38657141 -243536523 - L2 LINE L2 -558 2756 2571 437 304 30 0 chr1 38657504 38657639 -243536025 + MIR SINE MIR 44 182 -80 257 300 211 0 chr1 38657706 38657796 -243535868 + MIR SINE MIR 14 122 -140 208 222 0 0 chr1 38657804 38657840 -243535824 - MIR SINE MIR -3 259 224 491 279 29 7 chr1 38657863 38658003 -243535661 + MIR SINE MIR 120 262 0 736 215 74 6 chr1 38658035 38658198 -243535466 + MIR SINE MIR 75 248 -14 230 198 25 0 chr1 38659967 38660048 -243533616 + (CTGGGG)n Simple_repeat Simple_repeat 4 86 0 456 211 0 21 chr1 38660976 38661071 -243532593 - LTR33 LTR ERVL 0 521 429 433 205 291 0 chr1 38661138 38661289 -243532375 - LTR33 LTR ERVL -324 197 3 1442 163 123 21 chr1 38662029 38662354 -243531310 + MLT1A1 LTR MaLR 4 361 -4 1104 212 137 43 chr1 38662741 38663126 -243530538 + L2 LINE L2 2658 3122 -191 2484 86 0 3 chr1 38663126 38663430 -243530234 + AluSc SINE Alu 1 303 -6 1104 212 137 43 chr1 38663430 38663619 -243530045 + L2 LINE L2 3122 3292 -21 301 104 0 0 chr1 38663619 38663667 -243529997 + MADE1 DNA Mariner 33 80 0 303 277 176 85 chr1 38663709 38663806 -243529858 - L2 LINE L2 -52 3220 3133 955 144 29 0 chr1 38663806 38663980 -243529684 + L1MB2 LINE L1 5991 6169 -2 303 277 176 85 chr1 38663980 38664257 -243529407 - L2 LINE L2 -139 3133 2812 189 111 22 89 chr1 38664649 38664694 -243528970 + MER5A DNA MER1_type 86 127 -62 486 257 117 28 chr1 38665160 38665339 -243528325 - MIR SINE MIR -5 257 63 252 310 146 53 chr1 38665435 38665716 -243527948 + L2 LINE L2 2941 3247 -25 280 243 14 0 chr1 38666391 38666465 -243527199 + C-rich Low_complexity Low_complexity 3 77 0 485 290 77 0 chr1 38666735 38666904 -243526760 - MIR SINE MIR -72 190 9 212 283 100 33 chr1 38669862 38669982 -243523682 - L2 LINE L2 -225 3047 2920 341 322 130 0 chr1 38670619 38670765 -243522899 + MIR SINE MIR 84 248 -14 2547 155 44 11 chr1 38671401 38671853 -243521811 - MLT1C LTR MaLR 0 467 1 408 222 92 59 chr1 38672049 38672202 -243521462 + MIR3 SINE MIR 2 159 -49 239 313 209 36 chr1 38672708 38672880 -243520784 - L3 LINE CR1 -252 1325 1184 2484 94 0 0 chr1 38672880 38673187 -243520477 - AluSx SINE Alu -5 307 1 239 313 209 36 chr1 38673187 38673321 -243520343 - L3 LINE CR1 -393 1184 966 730 238 145 39 chr1 38673400 38673787 -243519877 - L1ME4a LINE L1 -95 6026 5599 484 257 117 11 chr1 38673868 38674047 -243519617 + HAL1 LINE L1 279 476 -2031 433 96 18 3 chr1 38674053 38674282 -243519382 + AluSx SINE Alu 1 303 -9 488 278 32 0 chr1 38674284 38674410 -243519254 + HAL1 LINE L1 489 618 -1889 455 305 51 23 chr1 38674437 38674614 -243519050 - L2 LINE L2 -189 3083 2902 273 298 24 0 chr1 38674626 38674710 -243518954 - L1ME4a LINE L1 -524 5597 5512 1859 156 0 4 chr1 38674856 38675132 -243518532 - AluJb SINE Alu -37 275 1 394 316 140 16 chr1 38675143 38675336 -243518328 - L1ME4a LINE L1 -754 5392 5176 21 0 0 0 chr1 38675410 38675431 -243518233 + AT_rich Low_complexity Low_complexity 1 21 0 302 288 141 60 chr1 38675544 38675728 -243517936 - L1ME4a LINE L1 -1213 4933 4735 1620 0 0 0 chr1 38675733 38675934 -243517730 + (GTTTG)n Simple_repeat Simple_repeat 1 201 0 1863 143 3 7 chr1 38675950 38676236 -243517428 - AluJo SINE Alu -26 286 2 607 304 15 0 chr1 38676298 38676499 -243517165 + HAL1 LINE L1 608 811 -1696 1352 121 5 15 chr1 38676613 38676819 -243516845 - L1MC1 LINE L1 -17 6316 6113 1883 218 107 52 chr1 38676823 38677577 -243516087 + HAL1 LINE L1 803 1598 -909 366 364 24 34 chr1 38677949 38678158 -243515506 - L3 LINE CR1 -653 924 718 2247 112 0 0 chr1 38678965 38679252 -243514412 + AluSx SINE Alu 1 287 -25 1224 156 45 159 chr1 38680172 38680594 -243513070 - MLT1A2 LTR MaLR 0 374 1 299 106 21 0 chr1 38680594 38680641 -243513023 - MLT1A1-int LTR MaLR 0 1735 1688 357 96 0 0 chr1 38680641 38680693 -243512971 - MADE1 DNA Mariner -28 52 1 1817 142 77 3 chr1 38680698 38681009 -243512655 - MLT1A1-int LTR MaLR -51 1684 1351 1281 128 0 0 chr1 38681009 38681173 -243512491 + AluSg SINE Alu 1 164 -146 991 113 0 0 chr1 38681314 38681447 -243512217 + AluSg SINE Alu 173 305 -7 6235 190 20 64 chr1 38681447 38682601 -243511063 - MLT1A1-int LTR MaLR -378 1357 276 1808 185 0 0 chr1 38682601 38682899 -243510765 - AluJo SINE Alu -13 299 2 6235 190 20 64 chr1 38682899 38683164 -243510500 - MLT1A1-int LTR MaLR -1459 276 1 1281 189 45 126 chr1 38683164 38683561 -243510103 - MLT1A1 LTR MaLR 0 365 1 366 291 24 16 chr1 38683588 38683715 -243509949 + LTR67 LTR ERVL 428 555 -2 222 222 19 0 chr1 38683749 38683803 -243509861 - L3 LINE CR1 -904 673 619 600 275 8 0 chr1 38683916 38684047 -243509617 - L2 LINE L2 -4 3268 3137 3957 90 19 2 chr1 38684289 38684831 -243508833 + L1PA11 LINE L1 5624 6174 0 743 279 147 92 chr1 38684834 38684981 -243508683 + L1MEd LINE L1 67 204 -5915 2098 131 7 3 chr1 38684981 38685271 -243508393 - AluSx SINE Alu -21 291 1 743 279 147 92 chr1 38685271 38685517 -243508147 + L1MEd LINE L1 204 435 -5684 2187 118 3 31 chr1 38685517 38685838 -243507826 - AluSx SINE Alu 0 312 1 743 279 147 92 chr1 38685838 38686137 -243507527 + L1MEd LINE L1 435 798 -5321 2249 116 0 0 chr1 38686168 38686501 -243507163 + AluSx SINE Alu 1 312 0 251 293 65 46 chr1 38686505 38686818 -243506846 + MLT1I LTR MaLR 1 299 -110 * 281 220 87 116 chr1 38686796 38686969 -243506695 + MLT1H LTR MaLR 359 526 -23 4447 249 60 45 chr1 38687193 38688266 -243505398 + L1ME1 LINE L1 81 1136 -5260 2539 57 0 0 chr1 38688266 38688562 -243505102 + AluY SINE Alu 7 302 -9 4447 249 60 45 chr1 38688562 38689009 -243504655 + L1ME1 LINE L1 1136 1574 -4822 1732 176 28 14 chr1 38689009 38689366 -243504298 + L1MB7 LINE L1 5818 6179 -5 4447 249 60 45 chr1 38689366 38689588 -243504076 + L1ME1 LINE L1 1574 1791 -4605 1773 183 30 0 chr1 38689588 38689888 -243503776 + AluJo SINE Alu 1 309 -3 4447 249 60 45 chr1 38689888 38690163 -243503501 + L1ME1 LINE L1 1791 2132 -4264 1430 159 25 138 chr1 38690182 38690616 -243503048 + L1MD1 LINE L1 147 531 -6009 302 205 24 12 chr1 38690612 38690695 -243502969 + L1P LINE L1 4157 4240 -1906 * 5205 187 50 37 chr1 38690681 38690835 -243502829 + L1MD1 LINE L1 4704 4855 -1781 2159 130 0 0 chr1 38690835 38691136 -243502528 + AluSx SINE Alu 10 310 -2 5205 187 50 37 chr1 38691136 38691600 -243502064 + L1MD1 LINE L1 4855 5312 -1324 324 0 0 0 chr1 38691600 38691636 -243502028 + (TAA)n Simple_repeat Simple_repeat 2 37 0 5205 187 50 37 chr1 38691636 38691937 -243501727 + L1MD1 LINE L1 5312 5608 -1028 999 176 6 0 chr1 38691937 38692096 -243501568 + FRAM SINE Alu 1 160 -6 5205 187 50 37 chr1 38692096 38692253 -243501411 + L1MD1 LINE L1 5608 5762 -874 2131 115 0 14 chr1 38692253 38692587 -243501077 + AluSx SINE Alu 1 330 0 5205 187 50 37 chr1 38692587 38693392 -243500272 + L1MD1 LINE L1 5762 6636 0 * 6842 217 100 70 chr1 38693388 38694485 -243499179 + L1ME1 LINE L1 2120 3182 -3049 1720 206 7 0 chr1 38694485 38694781 -243498883 + AluJb SINE Alu 11 308 -4 6842 217 100 70 chr1 38694781 38695317 -243498347 + L1ME1 LINE L1 3182 3700 -2531 956 168 0 19 chr1 38695317 38695478 -243498186 + AluSg/x SINE Alu 133 290 -19 6842 217 100 70 chr1 38695478 38696870 -243496794 + L1ME1 LINE L1 3700 5564 -667 684 180 27 7 chr1 38696856 38697006 -243496658 + L1ME1 LINE L1 5895 6047 -188 * 277 191 48 129 chr1 38697006 38697153 -243496511 + MIR SINE MIR 124 258 -4 755 267 124 50 chr1 38697172 38697591 -243496073 + MLT1J2 LTR MaLR 1 450 0 203 416 8 0 chr1 38697835 38697960 -243495704 + MIR3 SINE MIR 3 128 -80 443 209 64 9 chr1 38697984 38698094 -243495570 + MIR SINE MIR 117 232 -30 534 282 97 15 chr1 38698357 38698552 -243495112 - MIR SINE MIR 0 262 52 461 321 21 46 chr1 38699521 38699761 -243493903 - MIR SINE MIR -14 248 15 887 200 95 162 chr1 38699927 38700453 -243493211 - LTR16C LTR ERVL 0 491 1 892 217 11 0 chr1 38701144 38701319 -243492345 + MER97c DNA MER1_type? 1 177 -913 313 296 43 9 chr1 38701362 38701477 -243492187 - MER117 DNA MER1_type -24 173 55 504 284 85 28 chr1 38701910 38702086 -243491578 + L2 LINE L2 3122 3307 -6 362 302 14 36 chr1 38702412 38702551 -243491113 + MIR SINE MIR 79 214 -48 1250 291 74 12 chr1 38702738 38703143 -243490521 + MLT1H LTR MaLR 13 442 -107 250 288 206 12 chr1 38703265 38703425 -243490239 - L3 LINE CR1 -107 1470 1280 2188 92 53 0 chr1 38703902 38704186 -243489478 - AluSx SINE Alu -13 299 1 1236 128 55 48 chr1 38704186 38704348 -243489316 + LTR45B LTR ERV1 24 183 -306 2376 89 0 0 chr1 38704348 38704641 -243489023 + AluY SINE Alu 1 293 -18 1236 128 55 48 chr1 38704641 38704820 -243488844 + LTR45B LTR ERV1 183 409 -80 379 227 127 27 chr1 38704937 38705087 -243488577 + MER103 DNA DNA 2 166 0 222 171 24 0 chr1 38705146 38705187 -243488477 - MIR3 SINE MIR -48 160 119 366 227 49 11 chr1 38705555 38705670 -243487994 + MIR SINE MIR 23 141 -67 203 160 40 20 chr1 38705938 38705988 -243487676 - L2 LINE L2 -5 3267 3217 266 104 0 21 chr1 38705996 38706044 -243487620 + (CA)n Simple_repeat Simple_repeat 1 47 0 423 299 16 90 chr1 38706093 38706337 -243487327 + L2 LINE L2 2954 3179 -93 1883 172 78 47 chr1 38706620 38706807 -243486857 + MLT1D LTR MaLR 2 182 -323 2106 136 14 0 chr1 38706807 38707102 -243486562 + AluJb SINE Alu 1 299 -13 1883 172 78 47 chr1 38707102 38707403 -243486261 + MLT1D LTR MaLR 182 505 0 1017 175 0 0 chr1 38707541 38707707 -243485957 - FRAM SINE Alu 0 166 1 2283 117 7 0 chr1 38707723 38708032 -243485632 - AluSx SINE Alu -1 311 1 1022 247 63 0 chr1 38708212 38708451 -243485213 - MIR SINE MIR -4 258 5 318 295 40 101 chr1 38708518 38708560 -243485104 - L2 LINE L2 -50 3222 3179 1748 178 0 3 chr1 38708560 38708846 -243484818 + AluJo SINE Alu 21 305 -7 318 295 40 101 chr1 38708846 38709081 -243484583 - L2 LINE L2 -93 3179 2962 218 250 40 30 chr1 38709104 38709204 -243484460 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 2178 94 0 4 chr1 38710051 38710326 -243483338 - AluSx SINE Alu -18 294 21 201 288 12 12 chr1 38710343 38710423 -243483241 - L3 LINE CR1 -662 915 836 233 330 34 0 chr1 38710503 38710591 -243483073 + L3 LINE CR1 1439 1529 -48 2331 96 3 0 chr1 38710678 38710971 -243482693 + AluSx SINE Alu 1 294 -18 2194 105 20 3 chr1 38712331 38712626 -243481038 + AluSg SINE Alu 1 300 -10 848 125 25 0 chr1 38712627 38712787 -243480877 + GA-rich Low_complexity Low_complexity 1 164 0 701 118 8 0 chr1 38712761 38712880 -243480784 + (GAGAA)n Simple_repeat Simple_repeat 3 122 0 * 198 302 52 52 chr1 38713804 38713920 -243479744 + MIR SINE MIR 30 145 -63 649 179 259 0 chr1 38715144 38715306 -243478358 + MER3 DNA MER1_type 1 204 -5 558 292 49 5 chr1 38715477 38715662 -243478002 - MIR SINE MIR -59 203 11 370 363 58 22 chr1 38716078 38716304 -243477360 - MIR SINE MIR -6 256 23 431 310 150 18 chr1 38716967 38717241 -243476423 - L3b LINE CR1 -95 1488 1179 330 236 150 8 chr1 38717475 38717602 -243476062 - MIR SINE MIR -79 183 39 446 319 74 0 chr1 38718168 38718331 -243475333 + MIR SINE MIR 21 195 -67 1808 171 26 36 chr1 38719398 38719784 -243473880 + MLT1B LTR MaLR 9 390 0 632 248 124 5 chr1 38720252 38720470 -243473194 - MIR SINE MIR -1 261 18 338 276 163 0 chr1 38721847 38721970 -243471694 - L2 LINE L2 -1 3271 3129 447 270 123 6 chr1 38722568 38722731 -243470933 - MIR SINE MIR -34 228 47 308 292 110 67 chr1 38722702 38723048 -243470616 - L2 LINE L2 -947 2367 2007 * 2662 61 0 6 chr1 38723206 38723519 -243470145 + AluY SINE Alu 1 311 0 230 214 71 0 chr1 38724203 38724259 -243469405 - MIR SINE MIR -62 146 87 225 175 191 0 chr1 38724638 38724701 -243468963 + MIR SINE MIR 154 228 -34 631 255 93 10 chr1 38724721 38724925 -243468739 - MIR SINE MIR -40 222 2 198 0 0 0 chr1 38725969 38725991 -243467673 + (A)n Simple_repeat Simple_repeat 1 22 0 297 310 99 35 chr1 38726030 38726172 -243467492 + Charlie8 DNA MER1_type 2 152 -2265 240 213 191 32 chr1 38726211 38726305 -243467359 + Charlie8 DNA MER1_type 136 244 -2173 258 285 169 55 chr1 38726930 38727208 -243466456 + L1ME4a LINE L1 5543 5788 -333 2299 103 0 0 chr1 38727208 38727521 -243466143 + AluSg SINE Alu 1 310 0 2197 122 0 7 chr1 38727530 38727834 -243465830 + AluSx SINE Alu 2 303 -9 1605 148 16 4 chr1 38727838 38728081 -243465583 + AluJb SINE Alu 44 289 -23 258 285 169 55 chr1 38728081 38728295 -243465369 + L1ME4a LINE L1 5797 6108 -13 2126 83 72 7 chr1 38729589 38729865 -243463799 - AluSg1 SINE Alu -15 294 1 276 83 0 0 chr1 38730436 38730472 -243463192 + Alu SINE Alu 10 45 -256 1124 105 0 0 chr1 38730472 38730615 -243463049 + AluSg/x SINE Alu 156 298 -14 240 35 0 0 chr1 38730746 38730775 -243462889 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 399 239 28 46 chr1 38730922 38731031 -243462633 - MIR SINE MIR -1 261 155 2157 115 0 29 chr1 38731247 38731594 -243462070 - MER1B DNA MER1_type 0 337 1 24 0 0 0 chr1 38731612 38731636 -243462028 + AT_rich Low_complexity Low_complexity 1 24 0 478 254 74 60 chr1 38731657 38731874 -243461790 - MIR SINE MIR -23 239 20 196 298 18 0 chr1 38732283 38732340 -243461324 - L2 LINE L2 0 3272 3215 289 288 43 58 chr1 38732348 38732487 -243461177 + L2 LINE L2 3136 3272 0 490 241 92 23 chr1 38733621 38733795 -243459869 + MIR SINE MIR 77 262 0 2254 92 27 0 chr1 38734085 38734379 -243459285 - AluSp SINE Alu -11 302 1 2224 118 7 3 chr1 38734381 38734678 -243458986 - AluJb SINE Alu -14 298 1 1699 176 140 80 chr1 38734876 38735449 -243458215 - LTR48B LTR ERV1 -37 607 1 318 342 55 42 chr1 38735556 38735793 -243457871 - L2 LINE L2 -41 3231 2992 563 274 135 13 chr1 38735801 38736031 -243457633 + MIR SINE MIR 2 259 -3 270 289 24 0 chr1 38736209 38736292 -243457372 + L2 LINE L2 2591 2675 -639 1229 209 234 0 chr1 38736591 38736912 -243456752 + MSTD LTR MaLR 1 396 0 407 297 31 8 chr1 38737178 38737306 -243456358 + MIR SINE MIR 51 181 -81 184 271 34 0 chr1 38737311 38737370 -243456294 - MIR3 SINE MIR -48 160 100 236 262 155 0 chr1 38737416 38737519 -243456145 - MER5A DNA MER1_type -6 183 65 222 171 0 0 chr1 38737653 38737694 -243455970 + L2 LINE L2 2717 2757 -557 241 245 29 78 chr1 38737769 38737871 -243455793 + L2 LINE L2 2916 3012 -260 186 358 12 12 chr1 38738204 38738285 -243455379 + MIR SINE MIR 57 137 -71 30 69 0 0 chr1 38739451 38739509 -243454155 + GC_rich Low_complexity Low_complexity 1 58 0 203 189 19 19 chr1 38739554 38739607 -243454057 + (CCGGG)n Simple_repeat Simple_repeat 5 57 0 180 125 0 0 chr1 38742298 38742330 -243451334 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 2343 61 54 7 chr1 38742986 38743281 -243450383 - AluSp SINE Alu -4 309 1 246 243 14 14 chr1 38743381 38743455 -243450209 - MIR SINE MIR -176 86 13 219 228 185 54 chr1 38744320 38744412 -243449252 + MIR SINE MIR 17 120 -88 299 267 20 0 chr1 38744417 38744518 -243449146 + (TA)n Simple_repeat Simple_repeat 1 103 0 313 300 119 27 chr1 38744579 38744911 -243448753 + L2 LINE L2 2657 3038 -234 338 320 153 30 chr1 38745514 38745951 -243447713 - L2 LINE L2 -1096 2218 1728 1590 187 142 58 chr1 38746001 38746467 -243447197 + MLT1D LTR MaLR 1 505 0 416 317 56 7 chr1 38746539 38746681 -243446983 - MIR SINE MIR -10 252 104 435 241 337 0 chr1 38746878 38747044 -243446620 + MIR SINE MIR 2 223 -39 351 0 0 0 chr1 38747318 38747357 -243446307 + (TTGG)n Simple_repeat Simple_repeat 4 42 0 2214 226 20 24 chr1 38747366 38747871 -243445793 + MLT1J LTR MaLR 3 505 -6 792 125 132 7 chr1 38748828 38748980 -243444684 + MER53 DNA DNA 1 171 -18 785 320 41 68 chr1 38749283 38749652 -243444012 + L2 LINE L2 2914 3272 0 199 349 0 12 chr1 38750352 38750435 -243443229 + L2 LINE L2 2517 2598 -716 569 317 112 49 chr1 38750435 38750943 -243442721 + L1MEd LINE L1 20 559 -5560 323 250 160 37 chr1 38751285 38751491 -243442173 + L1M2 LINE L1 2644 2915 -4018 1976 123 7 7 chr1 38751527 38751836 -243441828 + AluSx SINE Alu 1 309 -3 685 283 68 11 chr1 38751836 38752203 -243441461 + L1M2 LINE L1 2935 3322 -3526 3021 101 90 62 chr1 38752229 38752297 -243441367 - MER1A DNA MER1_type -2173 527 462 2350 57 7 7 chr1 38752297 38752598 -243441066 + AluY SINE Alu 5 305 -6 3021 101 90 62 chr1 38752598 38753042 -243440622 - MER1A DNA MER1_type -2238 462 1 897 286 91 77 chr1 38753064 38753562 -243440102 + L1M2 LINE L1 3440 3930 -2918 1558 201 17 14 chr1 38753562 38753855 -243439809 - AluJo SINE Alu -8 294 1 897 286 91 77 chr1 38753855 38753953 -243439711 + L1M2 LINE L1 3930 4025 -2823 1575 100 166 8 chr1 38753953 38754212 -243439452 + AluSg1 SINE Alu 1 300 -9 897 286 91 77 chr1 38754212 38754433 -243439231 + L1M2 LINE L1 4025 4217 -2631 1530 171 14 38 chr1 38754870 38755163 -243438501 + AluJo SINE Alu 1 286 -26 381 226 0 0 chr1 38755165 38755311 -243438353 + (TA)n Simple_repeat Simple_repeat 1 146 0 315 273 181 51 chr1 38756263 38756479 -243437185 - MIR SINE MIR -8 254 11 299 313 125 9 chr1 38756887 38756999 -243436665 - L2 LINE L2 -5 3267 3143 392 343 34 14 chr1 38757237 38757383 -243436281 + L2 LINE L2 3165 3313 0 210 239 224 0 chr1 38757806 38757873 -243435791 + L3b LINE CR1 1361 1442 -141 245 286 29 0 chr1 38759091 38759161 -243434503 + MLT1L LTR MaLR 202 273 -342 939 302 121 29 chr1 38759450 38760088 -243433576 + L2 LINE L2 2594 3269 -3 449 314 5 78 chr1 38760109 38760313 -243433351 - MIR SINE MIR -54 208 20 798 231 44 35 chr1 38761119 38761348 -243432316 + MIR SINE MIR 28 258 -4 194 298 0 0 chr1 38761365 38761412 -243432252 + MIR SINE MIR 71 117 -91 981 229 121 39 chr1 38762517 38762880 -243430784 + L2 LINE L2 2921 3313 0 633 305 27 5 chr1 38763665 38763852 -243429812 + MIR SINE MIR 32 222 -40 425 309 29 0 chr1 38764268 38764404 -243429260 + MIR SINE MIR 68 207 -55 194 235 272 49 chr1 38765160 38765241 -243428423 + L2 LINE L2 3155 3253 -19 423 313 31 47 chr1 38765347 38765539 -243428125 + L3 LINE CR1 1375 1563 -14 863 219 55 5 chr1 38765554 38765755 -243427909 - MIR SINE MIR -19 243 33 1864 115 3 17 chr1 38765793 38766144 -243427520 - AluSc SINE Alu 0 347 1 1938 121 13 3 chr1 38766486 38766784 -243426880 - AluJb SINE Alu -4 308 8 198 118 0 0 chr1 38767267 38767301 -243426363 + (CAGA)n Simple_repeat Simple_repeat 1 34 0 227 337 48 0 chr1 38768560 38768643 -243425021 - L3b LINE CR1 -205 1378 1292 2081 102 0 3 chr1 38768645 38768950 -243424714 + AluSx SINE Alu 1 304 0 240 323 16 55 chr1 38769718 38769845 -243423819 + L2 LINE L2 2554 2675 -639 1021 283 170 41 chr1 38769869 38770473 -243423191 - L2 LINE L2 0 3313 2633 295 336 78 102 chr1 38770482 38770815 -243422849 + L2 LINE L2 2948 3272 0 182 91 30 0 chr1 38771668 38771701 -243421963 + (CA)n Simple_repeat Simple_repeat 1 34 0 410 321 12 6 chr1 38771732 38771897 -243421767 + (CATA)n Simple_repeat Simple_repeat 4 169 0 637 346 31 0 chr1 38772871 38773125 -243420539 + L2 LINE L2 2235 2496 -818 446 209 28 14 chr1 38773149 38773260 -243420404 + L1ME3A LINE L1 6035 6148 -16 29 47 0 0 chr1 38773292 38773335 -243420329 + AT_rich Low_complexity Low_complexity 1 43 0 1811 168 10 7 chr1 38774449 38774759 -243418905 + AluJb SINE Alu 1 311 -1 807 176 20 0 chr1 38774808 38774961 -243418703 - FAM SINE Alu -6 43 1 414 246 113 66 chr1 38775030 38775073 -243418591 + L1MEc LINE L1 1771 1810 -4405 1709 165 10 13 chr1 38775073 38775376 -243418288 + AluJb SINE Alu 1 302 -10 414 246 113 66 chr1 38775376 38775689 -243417975 + L1MEc LINE L1 1810 2109 -4106 10808 31 0 0 chr1 38775876 38777972 -243415692 + L1PA3 LINE L1 4095 6195 0 3085 35 3 11 chr1 38777974 38778349 -243415315 + L1PA5 LINE L1 5778 6149 -5 420 180 40 0 chr1 38778357 38778457 -243415207 + L1MEc LINE L1 2198 2301 -4095 1415 195 45 0 chr1 38778470 38778646 -243415018 - AluSx SINE Alu 0 312 117 184 0 62 31 chr1 38778646 38778678 -243414986 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1415 195 45 0 chr1 38778678 38778788 -243414876 - AluSx SINE Alu -195 117 13 1554 280 60 62 chr1 38779305 38779970 -243413694 + L1MEd LINE L1 26 689 -5430 2091 215 51 78 chr1 38779977 38780526 -243413138 + MLT1F1 LTR MaLR 1 559 -8 359 233 23 0 chr1 38780537 38780623 -243413041 + MLT1J1 LTR MaLR 355 442 -4 308 288 64 8 chr1 38780711 38780836 -243412828 + L1M4 LINE L1 78 209 -6333 293 183 302 6 chr1 38783217 38783386 -243410278 + MIR SINE MIR 41 259 -3 25 83 0 0 chr1 38783388 38783448 -243410216 + AT_rich Low_complexity Low_complexity 1 60 0 1285 171 89 52 chr1 38783617 38783944 -243409720 + MER58B DNA MER1_type 3 341 0 1993 110 14 10 chr1 38784038 38784328 -243409336 + AluSq SINE Alu 1 291 -22 25 65 0 0 chr1 38784529 38784575 -243409089 + AT_rich Low_complexity Low_complexity 1 46 0 390 315 50 57 chr1 38785192 38785838 -243407826 - Charlie3 DNA MER1_type -693 2017 1355 2145 282 73 46 chr1 38786280 38786642 -243407022 - L1MEc LINE L1 -4973 1423 1072 1997 121 3 0 chr1 38786642 38786948 -243406716 - AluSx SINE Alu 0 307 1 2145 282 73 46 chr1 38786948 38787338 -243406326 - L1MEc LINE L1 -5324 1072 694 1839 159 0 13 chr1 38787338 38787646 -243406018 - AluSx SINE Alu -8 304 1 2145 282 73 46 chr1 38787646 38788242 -243405422 - L1MEc LINE L1 -5702 694 36 2045 110 0 13 chr1 38788274 38788582 -243405082 + AluSg SINE Alu 1 304 -6 781 250 127 8 chr1 38788601 38788861 -243404803 + L1M4 LINE L1 4803 5093 -1053 1154 65 7 7 chr1 38788900 38789053 -243404611 - AluSp SINE Alu -159 154 2 550 265 53 30 chr1 38789054 38789318 -243404346 + L1M4 LINE L1 5079 5348 -798 25 0 0 0 chr1 38790673 38790698 -243402966 + GC_rich Low_complexity Low_complexity 1 25 0 273 57 0 0 chr1 38790739 38790774 -243402890 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 221 56 0 28 chr1 38790789 38790825 -243402839 + (CGGGGG)n Simple_repeat Simple_repeat 6 40 0 22 0 0 0 chr1 38791005 38791027 -243402637 + GC_rich Low_complexity Low_complexity 1 22 0 217 216 0 0 chr1 38791138 38791189 -243402475 + C-rich Low_complexity Low_complexity 1 51 0 713 240 23 0 chr1 38791726 38791947 -243401717 + L1M4 LINE L1 4988 5213 -933 461 143 29 0 chr1 38791953 38792023 -243401641 + MLT1B LTR MaLR 264 335 -55 1890 125 0 7 chr1 38792073 38792354 -243401310 + AluSx SINE Alu 1 279 -33 288 0 0 0 chr1 38792354 38792386 -243401278 + (CA)n Simple_repeat Simple_repeat 1 32 0 435 301 49 39 chr1 38792455 38792658 -243401006 + L1MEc LINE L1 2033 2237 -4159 229 312 57 0 chr1 38792756 38792897 -243400767 + L1MEc LINE L1 2252 2400 -3815 3188 239 101 54 chr1 38793000 38794251 -243399413 - L2 LINE L2 -144 3169 1882 486 221 6 23 chr1 38794376 38794528 -243399136 - MIR SINE MIR 0 262 49 249 347 45 36 chr1 38794598 38794820 -243398844 - MIR SINE MIR -6 256 33 2142 79 75 0 chr1 38794856 38795136 -243398528 - AluY SINE Alu -10 301 1 473 317 62 46 chr1 38796448 38796836 -243396828 - L2 LINE L2 -557 2757 2364 210 143 39 26 chr1 38796973 38797050 -243396614 + G-rich Low_complexity Low_complexity 1 78 0 2297 98 0 0 chr1 38798917 38799204 -243394460 + AluSx SINE Alu 1 287 -25 21 36 0 0 chr1 38799287 38799315 -243394349 + AT_rich Low_complexity Low_complexity 1 28 0 720 253 118 13 chr1 38799344 38799811 -243393853 - L1M4 LINE L1 -1455 4691 4176 343 270 29 35 chr1 38799813 38799987 -243393677 + L1MEc LINE L1 2515 2687 -3528 2143 204 55 44 chr1 38800062 38800312 -243393352 - MLT1F LTR MaLR 0 514 268 2999 122 16 46 chr1 38800312 38800813 -243392851 - MER66B LTR ERV1 0 486 1 2143 204 55 44 chr1 38800813 38801094 -243392570 - MLT1F LTR MaLR -246 268 1 780 254 88 18 chr1 38801094 38801433 -243392231 + L1MEc LINE L1 2768 3130 -3085 659 277 72 49 chr1 38801504 38801736 -243391928 + L1MEc LINE L1 3048 3273 -2942 821 169 0 22 chr1 38801736 38801872 -243391792 - FLAM_C SINE Alu 0 133 1 2203 122 0 3 chr1 38801875 38802179 -243391485 - AluSx SINE Alu -9 303 1 659 277 72 49 chr1 38802179 38802411 -243391253 + L1MEc LINE L1 3274 3527 -2688 1952 134 137 31 chr1 38802432 38802819 -243390845 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr1 38803051 38803075 -243390589 + (A)n Simple_repeat Simple_repeat 1 24 0 209 375 17 17 chr1 38803259 38803379 -243390285 - MIR SINE MIR -123 139 20 180 77 0 0 chr1 38804077 38804103 -243389561 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7341 59 4 32 chr1 38804103 38805335 -243388329 - SVA Other Other -799 1363 323 25 65 0 0 chr1 38805344 38805390 -243388274 + AT_rich Low_complexity Low_complexity 1 46 0 1576 146 96 21 chr1 38805417 38805698 -243387966 - AluJb SINE Alu -10 302 1 401 276 33 33 chr1 38805707 38805983 -243387681 - L1MEc LINE L1 -4967 1649 1181 2004 101 17 47 chr1 38806021 38806319 -243387345 + AluSx SINE Alu 1 289 -23 486 0 0 0 chr1 38806320 38806374 -243387290 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 333 197 128 34 chr1 38806763 38806880 -243386784 - L1M4 LINE L1 -1284 4862 4735 1138 251 362 18 chr1 38806936 38807336 -243386328 - L2 LINE L2 -563 2751 2490 1428 181 75 4 chr1 38807336 38807601 -243386063 + AluJo SINE Alu 1 284 -28 1138 251 362 18 chr1 38807601 38808028 -243385636 - L2 LINE L2 -824 2490 1639 529 239 154 72 chr1 38808031 38808422 -243385242 + L1ME2 LINE L1 5256 5614 -550 1780 142 25 25 chr1 38808422 38808724 -243384940 - AluJb SINE Alu 0 302 1 1958 148 20 3 chr1 38808731 38809029 -243384635 - AluJo SINE Alu -4 308 6 529 239 154 72 chr1 38809029 38809197 -243384467 + L1ME2 LINE L1 5619 5870 -294 1175 215 5 9 chr1 38809410 38809629 -243384035 + MER58A DNA MER1_type 1 218 -6 25 31 0 0 chr1 38810149 38810181 -243383483 + AT_rich Low_complexity Low_complexity 1 32 0 1810 147 6 35 chr1 38811384 38811698 -243381966 + AluJo SINE Alu 1 305 -7 260 322 16 16 chr1 38812604 38812725 -243380939 + MER5A DNA MER1_type 1 121 -68 1906 114 54 17 chr1 38812839 38813136 -243380528 + AluSg SINE Alu 1 308 -2 2525 210 40 39 chr1 38813376 38813604 -243380060 + Zaphod DNA AcHobo 2695 2921 -1110 2215 153 60 14 chr1 38813604 38814017 -243379647 + MSTB1 LTR MaLR 1 432 0 2525 210 40 39 chr1 38814017 38814536 -243379128 + Zaphod DNA AcHobo 2921 3443 -588 1074 194 9 18 chr1 38814520 38814742 -243378922 + Zaphod DNA AcHobo 3785 4004 -27 * 598 248 175 43 chr1 38816572 38816635 -243377029 + L1MC4 LINE L1 5482 5535 -586 2095 109 22 29 chr1 38816635 38816946 -243376718 - AluSg1 SINE Alu 0 309 1 598 248 175 43 chr1 38816946 38817250 -243376414 + L1MC4 LINE L1 5535 5775 -346 1329 125 82 0 chr1 38817379 38817587 -243376077 - AluJb SINE Alu -4 308 84 297 282 0 0 chr1 38818304 38818375 -243375289 - L2 LINE L2 -23 3249 3179 303 28 0 0 chr1 38818576 38818612 -243375052 + (TG)n Simple_repeat Simple_repeat 2 37 0 339 265 166 11 chr1 38818699 38818880 -243374784 - L2 LINE L2 -343 2971 2763 229 355 21 0 chr1 38820266 38820359 -243373305 - L2 LINE L2 -821 2493 2399 1033 95 68 16 chr1 38820571 38820761 -243372903 + Tigger7 DNA MER2_type 2208 2407 -80 272 253 35 0 chr1 38820762 38820849 -243372815 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 100 0 0 chr1 38820911 38820941 -243372723 + (TA)n Simple_repeat Simple_repeat 1 30 0 239 197 0 30 chr1 38820978 38821044 -243372620 + L1MC4 LINE L1 6640 6703 -1339 601 179 24 6 chr1 38821059 38821227 -243372437 + (TA)n Simple_repeat Simple_repeat 2 172 0 590 197 0 41 chr1 38821227 38821349 -243372315 + Tigger7 DNA MER2_type 2471 2587 0 245 98 24 0 chr1 38821418 38821459 -243372205 + MADE1 DNA Mariner 35 76 -4 22 0 0 0 chr1 38821511 38821533 -243372131 + AT_rich Low_complexity Low_complexity 1 22 0 1083 288 105 16 chr1 38821533 38822064 -243371600 + L2 LINE L2 2741 3309 -4 2434 78 0 7 chr1 38822178 38822474 -243371190 + AluY SINE Alu 1 294 -17 768 147 0 98 chr1 38822499 38822662 -243371002 + MLT1E2 LTR MaLR 1 147 -479 360 239 126 52 chr1 38822663 38822752 -243370912 - L1M4 LINE L1 -982 5164 5083 2418 97 0 3 chr1 38822752 38823062 -243370602 + AluSg SINE Alu 1 309 -1 360 239 126 52 chr1 38823062 38823202 -243370462 - L1M4 LINE L1 -1063 5083 4918 458 198 11 33 chr1 38823254 38823498 -243370166 + (TA)n Simple_repeat Simple_repeat 1 238 0 24 32 0 0 chr1 38823501 38823532 -243370132 + AT_rich Low_complexity Low_complexity 1 31 0 263 167 0 0 chr1 38823826 38823868 -243369796 - MIR SINE MIR 0 262 221 499 178 50 20 chr1 38823964 38824065 -243369599 + MLT1L LTR MaLR 132 235 -380 3005 6 0 0 chr1 38824083 38824400 -243369264 - AluYb8 SINE Alu -1 317 1 548 274 121 21 chr1 38824458 38824648 -243369016 + MLT1L LTR MaLR 349 557 -58 804 246 169 38 chr1 38825338 38825765 -243367899 + L1ME4a LINE L1 5582 6064 -57 1757 159 0 10 chr1 38826015 38826305 -243367359 + AluJb SINE Alu 24 310 -2 2021 115 3 39 chr1 38826357 38826662 -243367002 - AluSx SINE Alu -18 294 1 813 192 0 0 chr1 38829446 38829576 -243364088 + MER45A DNA AcHobo 1 130 -48 2431 83 0 13 chr1 38829628 38829941 -243363723 + AluY SINE Alu 1 309 -2 30 27 0 0 chr1 38830076 38830113 -243363551 + AT_rich Low_complexity Low_complexity 1 37 0 1480 194 32 157 chr1 38830277 38830908 -243362756 + MLT1H LTR MaLR 1 542 0 612 308 92 61 chr1 38830964 38831409 -243362255 + L1MEd LINE L1 520 978 -5394 2565 161 17 14 chr1 38831431 38831853 -243361811 + MLT2B2 LTR ERVL 1 423 -92 686 98 0 0 chr1 38831953 38832045 -243361619 - L1PA14 LINE L1 -35 6126 6035 725 167 8 0 chr1 38832052 38832172 -243361492 - AluJb SINE Alu -186 126 6 300 255 90 21 chr1 38832201 38832346 -243361318 + L1MEd LINE L1 1202 1356 -5028 552 214 36 71 chr1 38832346 38832514 -243361150 + MSTD LTR MaLR 1 162 -234 2205 78 21 0 chr1 38832514 38832797 -243360867 - AluSg SINE Alu -21 289 1 768 158 0 43 chr1 38833128 38833267 -243360397 + FLAM_C SINE Alu 1 133 0 269 298 149 0 chr1 38834083 38834224 -243359440 + MIR SINE MIR 20 181 -81 2325 79 14 0 chr1 38834253 38834544 -243359120 + AluSq SINE Alu 1 295 -18 806 169 0 0 chr1 38834993 38835123 -243358541 + FLAM_A SINE Alu 4 133 0 1921 163 0 7 chr1 38835489 38835783 -243357881 - AluSx SINE Alu -20 292 1 22 35 0 0 chr1 38836334 38836363 -243357301 + AT_rich Low_complexity Low_complexity 1 29 0 2264 99 3 23 chr1 38836777 38837081 -243356583 + AluSg SINE Alu 1 298 -12 777 168 19 71 chr1 38837135 38837290 -243356374 + AluSg/x SINE Alu 133 279 -31 654 261 48 64 chr1 38837850 38837925 -243355739 - MIR SINE MIR -16 246 171 1542 129 15 117 chr1 38837925 38838250 -243355414 + AluJo SINE Alu 5 296 -6 654 261 48 64 chr1 38838250 38838423 -243355241 - MIR SINE MIR -91 171 2 22 35 0 0 chr1 38838882 38838911 -243354753 + AT_rich Low_complexity Low_complexity 1 29 0 317 191 0 0 chr1 38839060 38839123 -243354541 + MARNA DNA Mariner 480 542 -44 1518 171 47 8 chr1 38839294 38839552 -243354112 + AluJo SINE Alu 1 268 -44 32 26 0 0 chr1 38839716 38839755 -243353909 + AT_rich Low_complexity Low_complexity 1 39 0 322 244 228 22 chr1 38839778 38839958 -243353706 - MIR SINE MIR 0 262 46 1706 172 28 10 chr1 38840855 38841146 -243352518 - AluJo SINE Alu -16 296 1 282 244 12 12 chr1 38841215 38841297 -243352367 + MER112 DNA MER1_type 1 82 -178 278 263 0 12 chr1 38841327 38841407 -243352257 + MER112 DNA MER1_type 83 161 -99 2343 113 0 0 chr1 38841745 38842047 -243351617 - AluSg SINE Alu -8 302 1 296 111 0 0 chr1 38842295 38842340 -243351324 - AluSx SINE Alu -5 296 252 2037 111 4 14 chr1 38842340 38842619 -243351045 - AluSx SINE Alu -35 277 2 1247 125 0 0 chr1 38842649 38842825 -243350839 + AluSg/x SINE Alu 135 310 0 394 220 10 0 chr1 38843335 38843435 -243350229 - MIR SINE MIR -114 148 48 2292 95 24 0 chr1 38843442 38843738 -243349926 - AluSx SINE Alu -9 303 1 940 209 51 9 chr1 39043812 39044027 -243149637 - L1MEc LINE L1 -6141 255 32 365 257 9 106 chr1 39044064 39044150 -243149514 + MER58 DNA MER1_type 1 75 -140 1686 158 10 35 chr1 39044150 39044324 -243149340 - AluJb SINE Alu -9 303 139 2460 85 0 0 chr1 39044324 39044630 -243149034 - AluY SINE Alu -5 306 1 1686 158 10 35 chr1 39044630 39044766 -243148898 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 39044766 39044792 -243148872 + MER58 DNA MER1_type 75 102 -113 792 167 8 15 chr1 39044804 39044936 -243148728 + FLAM_C SINE Alu 2 132 -1 1513 181 16 56 chr1 39044943 39045264 -243148400 + AluJb SINE Alu 5 312 0 237 221 35 23 chr1 39045264 39045350 -243148314 - L1MEc LINE L1 -2786 3429 3343 1440 135 47 0 chr1 39045350 39045593 -243148071 - AluSx SINE Alu 0 312 60 1535 208 70 89 chr1 39045621 39045973 -243147691 - L1MEc LINE L1 -2923 3292 2935 2199 108 0 3 chr1 39045973 39046270 -243147394 - AluSg SINE Alu -14 296 1 1535 208 70 89 chr1 39046270 39046397 -243147267 - L1MEc LINE L1 -3280 2935 2807 1647 170 3 38 chr1 39046397 39046715 -243146949 - AluJb SINE Alu -5 307 1 1535 208 70 89 chr1 39046715 39046792 -243146872 - L1MEc LINE L1 -3408 2807 2730 2131 124 0 0 chr1 39046792 39047090 -243146574 - AluSc SINE Alu -11 298 1 1535 208 70 89 chr1 39047090 39047348 -243146316 - L1MEc LINE L1 -3485 2730 2492 369 161 97 0 chr1 39047404 39047466 -243146198 - AluS SINE Alu -234 69 2 1743 167 3 17 chr1 39047489 39047789 -243145875 - AluJo SINE Alu -10 302 7 354 248 180 53 chr1 39047806 39048070 -243145594 - L1MEc LINE L1 -3783 2432 2178 306 226 173 42 chr1 39048087 39048255 -243145409 - L1MEc LINE L1 -4266 2130 1941 755 230 26 49 chr1 39048305 39048531 -243145133 - L1MC4 LINE L1 -959 7083 6863 198 330 11 43 chr1 39048540 39048634 -243145030 + L2 LINE L2 2716 2806 -508 244 283 7 101 chr1 39048997 39049135 -243144529 + MIR3 SINE MIR 69 193 -15 25 31 0 0 chr1 39049420 39049452 -243144212 + AT_rich Low_complexity Low_complexity 1 32 0 2545 47 0 7 chr1 39049452 39049780 -243143884 - AluY SINE Alu 0 311 1 1185 90 0 6 chr1 39049787 39049943 -243143721 - AluSg/x SINE Alu -24 288 134 2117 125 7 7 chr1 39049943 39050238 -243143426 - AluSx SINE Alu -17 295 1 188 241 74 0 chr1 39050398 39050452 -243143212 - MIR SINE MIR -111 97 40 1986 129 3 7 chr1 39050527 39050822 -243142842 + AluJb SINE Alu 4 297 -15 27 0 0 0 chr1 39051108 39051135 -243142529 + AT_rich Low_complexity Low_complexity 1 27 0 2236 121 3 0 chr1 39051345 39051652 -243142012 - AluSq SINE Alu -5 308 1 524 228 0 7 chr1 39051887 39052023 -243141641 + CT-rich Low_complexity Low_complexity 1 135 0 529 164 41 75 chr1 39052024 39052170 -243141494 - FAM SINE Alu -3 46 1 1646 175 34 10 chr1 39052270 39052562 -243141102 + AluJo SINE Alu 1 299 -13 2281 86 0 21 chr1 39052821 39053159 -243140505 - AluSq SINE Alu 0 332 1 3059 274 114 23 chr1 39053227 39054460 -243139204 + L2 LINE L2 1688 3035 -278 889 186 0 53 chr1 39054460 39054608 -243139056 + FRAM SINE Alu 1 136 -176 2395 95 3 0 chr1 39054608 39054913 -243138751 - AluSx SINE Alu -6 306 1 889 186 0 53 chr1 39054913 39054952 -243138712 + FRAM SINE Alu 136 176 0 217 268 144 31 chr1 39054952 39055049 -243138615 + L2 LINE L2 3027 3134 -179 481 173 12 0 chr1 39055522 39055603 -243138061 + MER69A DNA AcHobo 42 123 -54 180 0 0 0 chr1 39056268 39056288 -243137376 + (T)n Simple_repeat Simple_repeat 1 20 0 2287 74 3 0 chr1 39056380 39056689 -243136975 + AluY SINE Alu 1 310 0 380 206 254 0 chr1 39056698 39056824 -243136840 - MIR SINE MIR -27 235 78 214 287 138 21 chr1 39056913 39057007 -243136657 + MIR SINE MIR 38 142 -66 383 344 41 0 chr1 39057187 39057309 -243136355 + MIR3 SINE MIR 33 159 -49 261 366 87 25 chr1 39058291 39058452 -243135212 + MIR3 SINE MIR 24 194 -14 36 0 0 0 chr1 39059402 39059438 -243134226 + GC_rich Low_complexity Low_complexity 1 36 0 521 242 134 18 chr1 39060371 39060559 -243133105 - MIR SINE MIR -18 244 38 2035 76 0 82 chr1 39060777 39061093 -243132571 + AluSx SINE Alu 7 296 -16 341 50 0 0 chr1 39061619 39061659 -243132005 - LTR57-int LTR ERVL -3256 2087 2048 2182 115 0 0 chr1 39061710 39061997 -243131667 - AluSx SINE Alu -25 287 1 820 183 33 0 chr1 39062116 39062269 -243131395 + FRAM SINE Alu 4 161 -5 2402 66 0 20 chr1 39063000 39063305 -243130359 - AluY SINE Alu -12 299 1 189 121 0 0 chr1 39063559 39063592 -243130072 + (CA)n Simple_repeat Simple_repeat 1 33 0 29 0 0 0 chr1 39064316 39064345 -243129319 + AT_rich Low_complexity Low_complexity 1 29 0 1515 154 39 77 chr1 39064614 39064925 -243128739 + AluJo SINE Alu 1 299 -13 323 198 257 0 chr1 39065043 39065144 -243128520 - MIR SINE MIR -30 232 106 2217 102 44 0 chr1 39065524 39065817 -243127847 - AluSg SINE Alu -4 306 1 273 222 28 28 chr1 39066036 39066108 -243127556 + MER116 DNA Mariner 6 77 -3 404 145 0 13 chr1 39066533 39066609 -243127055 + (TCCC)n Simple_repeat Simple_repeat 2 76 0 1024 212 72 107 chr1 39066627 39066898 -243126766 - L1MC5 LINE L1 -182 7779 7500 2044 138 3 0 chr1 39066898 39067195 -243126469 - AluSq SINE Alu -15 298 1 1024 212 72 107 chr1 39067195 39067383 -243126281 - L1MC5 LINE L1 -461 7500 7337 689 278 12 6 chr1 39067383 39067556 -243126108 + MER5B DNA MER1_type 1 174 -4 1024 212 72 107 chr1 39067556 39067610 -243126054 - L1MC5 LINE L1 -624 7337 7283 420 258 47 8 chr1 39067614 39067742 -243125922 + MER94 DNA DNA 2 134 0 902 215 72 69 chr1 39067886 39068221 -243125443 - L1MC5 LINE L1 -744 7217 6882 788 211 177 34 chr1 39068240 39068600 -243125064 - MLT1C LTR MaLR -3 464 11 1841 147 22 136 chr1 39068623 39068715 -243124949 - MLT1C-int LTR MaLR -14 1357 1256 2125 116 14 0 chr1 39068715 39069009 -243124655 - AluY SINE Alu -13 298 1 1841 147 22 136 chr1 39069009 39069373 -243124291 - MLT1C-int LTR MaLR -115 1256 953 3531 198 43 41 chr1 39069543 39070373 -243123291 - MLT1C-int LTR MaLR -496 875 44 771 118 0 27 chr1 39070814 39070924 -243122740 + FRAM SINE Alu 58 164 -12 2253 84 3 29 chr1 39071041 39071351 -243122313 - AluSq SINE Alu -7 306 5 24 0 0 0 chr1 39071546 39071570 -243122094 + AT_rich Low_complexity Low_complexity 1 24 0 2239 126 3 0 chr1 39071695 39071997 -243121667 - AluSq SINE Alu -10 303 1 519 262 45 82 chr1 39072037 39072257 -243121407 - L1ME1 LINE L1 -31 6135 5925 2298 106 0 7 chr1 39072257 39072560 -243121104 + AluSq SINE Alu 1 301 -12 519 262 45 82 chr1 39072560 39072606 -243121058 - L1ME1 LINE L1 -241 5925 5879 451 183 0 0 chr1 39072663 39072734 -243120930 + AluJ/FRAM SINE Alu 222 292 -20 354 315 112 52 chr1 39072775 39073007 -243120657 - L1MEc LINE L1 -4437 2284 2039 989 178 18 0 chr1 39073007 39073170 -243120494 - FRAM SINE Alu 0 166 1 1017 189 88 47 chr1 39073178 39073496 -243120168 - L1MEc LINE L1 -4707 1833 1503 825 114 8 0 chr1 39073498 39073621 -243120043 - L1MB4 LINE L1 -3 6177 6054 403 71 12 47 chr1 39073745 39073830 -243119834 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1874 129 17 37 chr1 39073852 39074004 -243119660 - AluSx SINE Alu -24 288 143 2200 123 0 0 chr1 39074004 39074313 -243119351 - AluSx SINE Alu -3 309 1 1874 129 17 37 chr1 39074313 39074454 -243119210 - AluSx SINE Alu -169 143 1 2073 139 3 3 chr1 39074498 39074808 -243118856 - AluSx SINE Alu -2 310 1 34 42 0 0 chr1 39074897 39074945 -243118719 + AT_rich Low_complexity Low_complexity 1 48 0 1135 119 6 0 chr1 39074965 39075124 -243118540 + MER101 LTR ERV1 1 160 -314 2456 68 0 0 chr1 39075412 39075704 -243117960 - AluSx SINE Alu -20 292 1 1625 145 22 14 chr1 39075942 39076218 -243117446 + AluSx SINE Alu 35 312 0 1364 188 43 18 chr1 39076829 39077105 -243116559 + AluJo SINE Alu 14 296 -16 21 57 0 0 chr1 39077105 39077140 -243116524 + AT_rich Low_complexity Low_complexity 1 35 0 288 305 30 69 chr1 39077281 39077412 -243116252 - MIR3 SINE MIR -28 180 55 2878 184 17 9 chr1 39077487 39078014 -243115650 + Tigger6b DNA MER2_type 6 536 -1061 2357 83 0 0 chr1 39078015 39078303 -243115361 + AluSq SINE Alu 11 298 -15 2159 101 3 3 chr1 39078316 39078604 -243115060 + AluSq SINE Alu 1 288 -25 225 94 0 0 chr1 39078604 39078636 -243115028 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 3784 188 44 48 chr1 39078672 39079220 -243114444 + Tigger6b DNA MER2_type 671 1219 -378 2350 102 3 0 chr1 39079220 39079523 -243114141 - AluSx SINE Alu -8 304 1 3784 188 44 48 chr1 39079523 39079615 -243114049 + Tigger6b DNA MER2_type 1219 1310 -287 2237 120 0 7 chr1 39079615 39079923 -243113741 - AluSx SINE Alu -6 306 1 3784 188 44 48 chr1 39079923 39080052 -243113612 + Tigger6b DNA MER2_type 1310 1438 -159 2174 96 24 0 chr1 39080052 39080345 -243113319 - AluSp SINE Alu -13 300 1 3784 188 44 48 chr1 39080345 39080476 -243113188 + Tigger6b DNA MER2_type 1438 1570 -27 1840 147 14 7 chr1 39080508 39080794 -243112870 + AluJo SINE Alu 2 289 -23 3011 200 42 22 chr1 39081217 39082015 -243111649 + MER21B LTR ERV1 1 862 -1 207 0 0 0 chr1 39082754 39082777 -243110887 + (TG)n Simple_repeat Simple_repeat 2 24 0 509 237 9 9 chr1 39082784 39082898 -243110766 + MIR SINE MIR 103 216 -46 254 278 0 0 chr1 39082908 39082962 -243110702 + AluSg/x SINE Alu 133 186 -116 38 0 0 0 chr1 39082970 39083008 -243110656 + AT_rich Low_complexity Low_complexity 1 38 0 464 269 197 22 chr1 39083021 39083244 -243110420 + L1MC4a LINE L1 5614 5875 -1933 878 226 69 42 chr1 39083701 39083846 -243109818 - L2 LINE L2 -1372 1942 1802 2293 104 0 7 chr1 39083846 39084154 -243109510 - AluSg SINE Alu -4 306 1 2284 109 0 6 chr1 39084154 39084466 -243109198 - AluSx SINE Alu -1 311 1 878 226 69 42 chr1 39084466 39084580 -243109084 - L2 LINE L2 -1511 1803 1675 2375 74 0 46 chr1 39084692 39085018 -243108646 - AluY SINE Alu 0 311 1 228 237 26 70 chr1 39085248 39085362 -243108302 - HAL1 LINE L1 -1130 1377 1269 932 95 0 0 chr1 39085445 39085561 -243108103 - AluSc SINE Alu -193 116 1 689 259 104 48 chr1 39086927 39087243 -243106421 - L1ME4a LINE L1 -2 6119 5765 5522 146 30 9 chr1 39087243 39088022 -243105642 - MER6 DNA MER2_type -1 864 65 2108 130 0 3 chr1 39088022 39088323 -243105341 - AluSx SINE Alu -10 302 3 5522 146 30 9 chr1 39088323 39088390 -243105274 - MER6 DNA MER2_type -800 65 1 689 259 104 48 chr1 39088390 39088555 -243105109 - L1ME4a LINE L1 -356 5765 5611 314 246 0 15 chr1 39089019 39089084 -243104580 - MLT1K LTR MaLR -339 249 186 1627 170 16 53 chr1 39089437 39089760 -243103904 - AluJo SINE Alu -1 311 1 677 212 0 23 chr1 39090886 39091018 -243102646 - FLAM_C SINE Alu -4 129 1 21 57 0 0 chr1 39091019 39091054 -243102610 + AT_rich Low_complexity Low_complexity 1 35 0 1788 179 10 0 chr1 39091098 39091388 -243102276 + AluJo SINE Alu 1 293 -19 263 161 0 32 chr1 39091388 39091450 -243102214 + GA-rich Low_complexity Low_complexity 1 60 0 386 271 164 51 chr1 39091450 39091842 -243101822 - MLT1J LTR MaLR -69 442 1 1957 135 0 14 chr1 39092668 39093003 -243100661 + AluSx SINE Alu 1 331 0 23 54 0 0 chr1 39093239 39093276 -243100388 + AT_rich Low_complexity Low_complexity 1 37 0 1271 265 69 33 chr1 39093468 39093860 -243099804 - MLT1G LTR MaLR -16 574 169 999 217 10 10 chr1 39093871 39094078 -243099586 - AluJo SINE Alu -22 290 84 702 205 142 32 chr1 39094078 39094268 -243099396 - MLT1G LTR MaLR -380 215 5 1958 146 7 7 chr1 39094421 39094722 -243098942 - AluSx SINE Alu -11 301 1 1833 148 0 11 chr1 39095220 39095497 -243098167 + AluJo SINE Alu 23 296 -16 320 273 98 31 chr1 39095513 39095707 -243097957 - L1MC/D LINE L1 -2262 5546 5340 361 258 56 84 chr1 39096326 39096404 -243097260 - L1ME3A LINE L1 -220 5950 5871 2007 127 3 17 chr1 39096404 39096703 -243096961 - AluSg SINE Alu -15 295 1 361 258 56 84 chr1 39096703 39096802 -243096862 - L1ME3A LINE L1 -299 5871 5778 1160 138 30 35 chr1 39096804 39096835 -243096829 - L1MB2 LINE L1 -2 6169 6139 2051 78 89 4 chr1 39096835 39097116 -243096548 + AluY SINE Alu 1 305 -6 1160 138 30 35 chr1 39097116 39097315 -243096349 - L1MB2 LINE L1 -32 6139 5940 248 193 0 18 chr1 39097418 39097475 -243096189 - L1MB2 LINE L1 -339 5844 5789 287 90 13 128 chr1 39097527 39097554 -243096110 - L1M3 LINE L1 -334 5849 5820 2009 121 0 57 chr1 39097554 39097869 -243095795 - AluSq SINE Alu -16 297 1 287 90 13 128 chr1 39097869 39097919 -243095745 - L1M3 LINE L1 -363 5820 5781 1440 144 60 75 chr1 39097920 39098239 -243095425 + THE1C LTR MaLR 1 314 -61 1971 136 3 14 chr1 39098241 39098527 -243095137 + AluSx SINE Alu 1 283 -29 1405 190 50 53 chr1 39098705 39098827 -243094837 - MER58B DNA MER1_type -2079 341 220 2149 114 20 0 chr1 39098827 39099124 -243094540 + AluSx SINE Alu 1 303 -9 1405 190 50 53 chr1 39099124 39099343 -243094321 - MER58B DNA MER1_type -2200 220 1 433 136 0 0 chr1 39099435 39099494 -243094170 - MER8 DNA MER2_type 0 239 181 237 176 235 0 chr1 39099513 39099564 -243094100 - MER2 DNA MER2_type 0 345 283 * 723 195 27 76 chr1 39099542 39099727 -243093937 - MER8 DNA MER2_type -62 177 2 654 282 85 45 chr1 39099728 39100222 -243093442 - L1MB2 LINE L1 -607 5563 5090 1966 150 0 42 chr1 39100222 39100402 -243093262 - MER2 DNA MER2_type 0 344 185 2132 113 0 0 chr1 39100402 39100686 -243092978 - AluSq SINE Alu -16 297 14 1966 150 0 42 chr1 39100686 39100864 -243092800 - MER2 DNA MER2_type -159 185 1 654 282 85 45 chr1 39100864 39101448 -243092216 - L1MB2 LINE L1 -1080 5090 4447 3262 129 0 69 chr1 39101449 39102014 -243091650 - MER1A DNA MER1_type -1 526 1 428 296 166 24 chr1 39102043 39102290 -243091374 - L1M4 LINE L1 -1120 5026 4745 23 0 0 0 chr1 39102666 39102689 -243090975 + AT_rich Low_complexity Low_complexity 1 23 0 526 251 18 27 chr1 39103108 39103327 -243090337 - L1M4 LINE L1 -2540 3606 3390 1423 160 25 25 chr1 39103327 39103602 -243090062 - AluJo SINE Alu -14 298 24 1471 206 111 85 chr1 39103637 39103833 -243089831 - L1ME LINE L1 -679 5483 5294 1633 152 0 40 chr1 39103833 39104131 -243089533 - AluJb SINE Alu 0 302 16 1471 206 111 85 chr1 39104131 39104264 -243089400 - L1ME LINE L1 -868 5294 5166 204 97 0 0 chr1 39104264 39104295 -243089369 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 1471 206 111 85 chr1 39104295 39104747 -243088917 - L1ME LINE L1 -996 5166 4672 2329 86 3 0 chr1 39104747 39105048 -243088616 + AluSx SINE Alu 1 302 -10 1471 206 111 85 chr1 39105048 39105214 -243088450 - L1ME LINE L1 -1490 4672 4512 2156 122 7 0 chr1 39105214 39105518 -243088146 - AluSx SINE Alu -6 306 1 1536 254 52 31 chr1 39105518 39106191 -243087473 - L1ME LINE L1 -2010 4136 3394 440 198 83 25 chr1 39106205 39106326 -243087338 + MER3 DNA MER1_type 22 149 -60 269 108 0 0 chr1 39106326 39106363 -243087301 + U2 snRNA snRNA 1 37 -151 234 200 33 17 chr1 39106362 39106422 -243087242 + MER3 DNA MER1_type 148 208 -1 * 329 216 57 0 chr1 39106512 39106600 -243087064 - L1ME LINE L1 -2784 3362 3270 1614 172 28 7 chr1 39106621 39106911 -243086753 - AluSq SINE Alu -17 296 1 2240 170 40 7 chr1 39106946 39107399 -243086265 - L1MB2 LINE L1 -4 6167 5700 2217 131 0 0 chr1 39107538 39107844 -243085820 + AluSx SINE Alu 6 311 -1 562 235 71 18 chr1 39107975 39108145 -243085519 - MER58C DNA MER1_type -5 210 32 2236 89 0 7 chr1 39108176 39108469 -243085195 - AluSq SINE Alu -22 291 1 1979 136 27 0 chr1 39110149 39110450 -243083214 - AluSx SINE Alu -3 309 1 2255 109 0 7 chr1 39110708 39111011 -243082653 + AluSx SINE Alu 1 301 -11 36 53 0 0 chr1 39111086 39111143 -243082521 + AT_rich Low_complexity Low_complexity 1 57 0 1557 146 4 8 chr1 39111143 39111383 -243082281 - AluJo SINE Alu -25 287 49 2199 106 7 0 chr1 39111461 39111753 -243081911 - AluSx SINE Alu -18 294 1 889 175 26 7 chr1 39113283 39113437 -243080227 + AluJo SINE Alu 1 157 -155 198 0 0 0 chr1 39113438 39113460 -243080204 + (CA)n Simple_repeat Simple_repeat 1 22 0 324 200 0 3 chr1 39113462 39113536 -243080128 + AluJo SINE Alu 82 138 -164 342 0 0 0 chr1 39113537 39113575 -243080089 + (CA)n Simple_repeat Simple_repeat 1 38 0 2029 274 89 54 chr1 39113779 39114755 -243078909 + L2 LINE L2 1927 2936 -378 1799 172 19 13 chr1 39115034 39115342 -243078322 + AluJb SINE Alu 1 310 -2 648 296 103 21 chr1 39115397 39115611 -243078053 - L1MC4a LINE L1 -1926 5882 5630 2392 96 0 3 chr1 39115611 39115924 -243077740 + AluSx SINE Alu 1 312 0 648 296 103 21 chr1 39115924 39116040 -243077624 - L1MC4a LINE L1 -2178 5630 5525 476 145 0 13 chr1 39116043 39116119 -243077545 - MER58A DNA MER1_type 0 224 150 2242 84 6 43 chr1 39116201 39116523 -243077141 - AluY SINE Alu -1 310 1 1624 170 67 0 chr1 39117122 39117392 -243076272 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 39117610 39117757 -243075907 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 39117825 39117939 -243075725 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 39117950 39118021 -243075643 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 39118073 39118364 -243075300 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 39118389 39118464 -243075200 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 39119552 39119614 -243074050 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 39119631 39119854 -243073810 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 39121004 39121047 -243072617 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 39121411 39121553 -243072111 + L2 LINE L2 3102 3256 -16 27 0 0 0 chr1 39122112 39122139 -243071525 + AT_rich Low_complexity Low_complexity 1 27 0 1597 157 42 54 chr1 39123867 39124065 -243069599 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 39124065 39124339 -243069325 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 39124339 39124453 -243069211 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 39124485 39124645 -243069019 - MER20 DNA MER1_type 0 219 61 248 348 37 43 chr1 39126238 39126402 -243067262 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 39126415 39126439 -243067225 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 39127905 39128217 -243065447 + AluSq SINE Alu 1 300 -13 2055 118 0 36 chr1 39128396 39128702 -243064962 - AluSq SINE Alu -18 295 1 2006 115 39 0 chr1 39128872 39129151 -243064513 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 39129195 39129447 -243064217 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 39129741 39129963 -243063701 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 39130000 39130210 -243063454 - MER96B DNA MER1_type? -201 216 1 416 258 139 24 chr1 39130614 39130901 -243062763 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 39130911 39130963 -243062701 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 39131148 39131194 -243062470 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 297 89 0 0 chr1 39131498 39131543 -243062121 + (T)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chr1 39131903 39131925 -243061739 + (T)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr1 39132238 39132283 -243061381 + (TG)n Simple_repeat Simple_repeat 1 45 0 2280 71 0 3 chr1 39132286 39132589 -243061075 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 39133159 39133494 -243060170 - MARNA DNA Mariner -156 430 86 811 157 108 3 chr1 39133545 39133773 -243059891 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 39133794 39134028 -243059636 - MER46A DNA MER2_type 0 236 1 1791 154 0 4 chr1 39134049 39134322 -243059342 + AluSx SINE Alu 1 272 -40 255 61 0 0 chr1 39134395 39134428 -243059236 + (TA)n Simple_repeat Simple_repeat 1 33 0 1691 93 4 62 chr1 39134528 39134787 -243058877 - AluY SINE Alu -67 244 1 1078 113 0 0 chr1 39134789 39134931 -243058733 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 39135114 39135427 -243058237 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 39135613 39135729 -243057935 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 39136888 39137186 -243056478 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 39137624 39137920 -243055744 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 39138013 39138301 -243055363 - AluSx SINE Alu -24 288 1 11366 132 88 73 chr1 39138573 39140189 -243053475 - Tigger1 DNA MER2_type -1 2417 827 2103 122 0 3 chr1 39140189 39140493 -243053171 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 39140493 39140630 -243053034 - AluSq/x SINE Alu -176 136 1 11366 132 88 73 chr1 39140630 39141235 -243052429 - Tigger1 DNA MER2_type -1590 828 24 2221 82 4 0 chr1 39141393 39141720 -243051944 - AluY SINE Alu 0 328 1 344 225 78 8 chr1 39141980 39142109 -243051555 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 39142118 39142190 -243051474 - MIR SINE MIR -76 186 111 2454 86 0 0 chr1 39142957 39143259 -243050405 + AluSp SINE Alu 1 302 -11 239 227 68 11 chr1 39143261 39143349 -243050315 - L1MC4 LINE L1 -1340 6702 6610 201 147 0 0 chr1 39143349 39143383 -243050281 + (TA)n Simple_repeat Simple_repeat 1 34 0 2007 102 27 20 chr1 39143548 39143841 -243049823 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 39144337 39144384 -243049280 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 39144389 39144413 -243049251 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 39144868 39145100 -243048564 + MIR SINE MIR 12 243 -19 452 249 18 98 chr1 39145845 39145923 -243047741 - MER112 DNA MER1_type -1 255 172 2021 121 9 19 chr1 39145923 39146238 -243047426 - AluSx SINE Alu 0 312 1 452 249 18 98 chr1 39146238 39146436 -243047228 - MER112 DNA MER1_type -84 172 1 1956 136 149 8 chr1 39147330 39147705 -243045959 - MSTA LTR MaLR 0 428 1 285 289 62 0 chr1 39147954 39148051 -243045613 + L2 LINE L2 3199 3301 -12 369 165 68 29 chr1 39149207 39149289 -243044375 + MER112 DNA MER1_type 5 93 -167 2398 104 0 0 chr1 39149289 39149598 -243044066 - AluSx SINE Alu -3 309 1 369 165 68 29 chr1 39149598 39149618 -243044046 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 39149671 39149704 -243043960 + A-rich Low_complexity Low_complexity 3 37 0 853 112 15 22 chr1 39149795 39149929 -243043735 - FLAM_C SINE Alu 0 133 1 224 333 39 0 chr1 39150876 39150954 -243042710 + L2 LINE L2 3098 3178 -94 2357 108 3 0 chr1 39150959 39151266 -243042398 - AluSx SINE Alu -4 308 1 1645 138 116 8 chr1 39151397 39151665 -243041999 - AluSg1 SINE Alu -12 297 1 451 284 89 5 chr1 39151685 39151875 -243041789 + MIR SINE MIR 46 251 -11 418 242 38 147 chr1 39153186 39153224 -243040440 + MIR SINE MIR 2 43 -219 1894 158 3 16 chr1 39153224 39153528 -243040136 + AluJo SINE Alu 1 300 -12 418 242 38 147 chr1 39153528 39153614 -243040050 + MIR SINE MIR 43 137 -125 1606 173 25 62 chr1 39153614 39153625 -243040039 - AluJo SINE Alu -1 311 301 189 0 0 0 chr1 39153625 39153646 -243040018 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 411 38 0 0 chr1 39153645 39153698 -243039966 + (TG)n Simple_repeat Simple_repeat 2 54 0 1606 173 25 62 chr1 39153646 39154009 -243039655 - AluJo SINE Alu -11 301 1 418 242 38 147 chr1 39154009 39154176 -243039488 + MIR SINE MIR 137 262 0 2180 119 0 0 chr1 39154266 39154559 -243039105 - AluSx SINE Alu -19 293 1 2305 119 0 0 chr1 39155355 39155665 -243037999 - AluSx SINE Alu 0 312 3 330 243 10 39 chr1 39155679 39155782 -243037882 + L2 LINE L2 3136 3235 -37 2288 91 7 3 chr1 39156076 39156372 -243037292 + AluSq SINE Alu 1 297 -16 881 263 4 52 chr1 39156405 39156569 -243037095 - MIR SINE MIR -1 261 114 2183 128 7 0 chr1 39156569 39156867 -243036797 + AluSq SINE Alu 1 300 -13 881 263 4 52 chr1 39156867 39156972 -243036692 - MIR SINE MIR -148 114 5 248 332 39 17 chr1 39156986 39157256 -243036408 + L1ME LINE L1 5233 5514 -652 1000 179 115 12 chr1 39157277 39157592 -243036072 - L1MC4 LINE L1 -848 6960 6594 2518 77 0 0 chr1 39157748 39158059 -243035605 + AluY SINE Alu 1 311 0 2092 100 7 0 chr1 39158081 39158468 -243035196 - AluSx SINE Alu 0 389 1 264 59 0 0 chr1 39158474 39158508 -243035156 + (TTCTC)n Simple_repeat Simple_repeat 1 34 0 1737 163 0 14 chr1 39158514 39158655 -243035009 - AluSx SINE Alu -39 273 136 2087 134 0 3 chr1 39158655 39158953 -243034711 - AluSq SINE Alu -16 297 1 1737 163 0 14 chr1 39158953 39159088 -243034576 - AluSx SINE Alu -176 136 1 2343 138 13 100 chr1 39159097 39159250 -243034414 - L1MC3 LINE L1 -8 7777 7612 2080 91 4 4 chr1 39159250 39159515 -243034149 - AluSx SINE Alu -18 294 30 2343 138 13 100 chr1 39159515 39159889 -243033775 - L1MC3 LINE L1 -173 7612 7296 180 0 0 0 chr1 39159899 39159919 -243033745 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1873 153 20 0 chr1 39159928 39160228 -243033436 - AluSx SINE Alu -6 306 1 1448 189 3 39 chr1 39160416 39160701 -243032963 + AluJo SINE Alu 13 287 -25 2718 13 0 10 chr1 39160708 39161012 -243032652 + AluY SINE Alu 1 301 -10 912 188 0 0 chr1 39161015 39161237 -243032427 + FRAM SINE Alu 1 86 0 1081 243 53 88 chr1 39161237 39161607 -243032057 - MLT1J LTR MaLR -92 419 64 2220 71 7 7 chr1 39161607 39161914 -243031750 + AluY SINE Alu 1 307 0 1081 243 53 88 chr1 39161914 39161974 -243031690 - MLT1J LTR MaLR -447 64 3 2506 97 0 0 chr1 39162115 39162426 -243031238 - AluSq SINE Alu -2 311 1 1923 157 0 3 chr1 39162691 39162984 -243030680 - AluSx SINE Alu -20 292 1 299 268 113 21 chr1 39163476 39163618 -243030046 - MIR SINE MIR -16 246 92 1904 168 0 3 chr1 39163767 39164070 -243029594 - AluJb SINE Alu -2 310 9 349 290 136 18 chr1 39164121 39164290 -243029374 + MER5A DNA MER1_type 1 189 0 718 217 7 0 chr1 39164824 39164967 -243028697 - MER69 DNA AcHobo -2 2524 2381 440 141 0 0 chr1 39165113 39165177 -243028487 - MER69 DNA AcHobo -1159 67 4 753 135 88 100 chr1 39165211 39165381 -243028283 - AluJb SINE Alu -8 304 137 22 35 0 0 chr1 39165486 39165515 -243028149 + AT_rich Low_complexity Low_complexity 1 29 0 810 127 17 0 chr1 39165515 39165633 -243028031 - FLAM_C SINE Alu -23 120 1 2135 130 3 0 chr1 39165899 39166198 -243027466 - AluSx SINE Alu -12 300 1 280 289 16 55 chr1 39166323 39166451 -243027213 - MIR3 SINE MIR -45 163 41 511 289 6 6 chr1 39166621 39166777 -243026887 + L1ME LINE L1 5565 5720 -401 2140 119 0 0 chr1 39166791 39167112 -243026552 + AluSc SINE Alu 3 323 0 2075 133 0 7 chr1 39167116 39167416 -243026248 + AluSx SINE Alu 1 298 -14 26 50 0 0 chr1 39167437 39167477 -243026187 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 39167637 39167665 -243025999 + AT_rich Low_complexity Low_complexity 1 28 0 2270 101 0 14 chr1 39167665 39167962 -243025702 - AluSx SINE Alu -19 293 1 261 0 0 0 chr1 39167962 39167991 -243025673 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1861 109 4 0 chr1 39167991 39168238 -243025426 - AluSq SINE Alu -30 283 36 1405 194 0 78 chr1 39168248 39168567 -243025097 - AluJo SINE Alu -18 294 1 1199 249 128 85 chr1 39168568 39169185 -243024479 - HAL1 LINE L1 -201 2306 1634 1442 186 49 33 chr1 39169185 39169429 -243024235 + AluJb SINE Alu 1 252 -60 183 42 0 0 chr1 39169429 39169453 -243024211 + (CACTG)n Simple_repeat Simple_repeat 1 24 0 1442 186 49 33 chr1 39169453 39169515 -243024149 + AluJb SINE Alu 252 312 0 1199 249 128 85 chr1 39169515 39169838 -243023826 - HAL1 LINE L1 -873 1634 1326 2110 102 7 0 chr1 39170049 39170324 -243023340 + AluY SINE Alu 13 289 -22 2228 109 3 0 chr1 39170731 39171025 -243022639 - AluSg SINE Alu -15 295 1 762 170 17 0 chr1 39171326 39171489 -243022175 - MER51A LTR ERV1 -3 637 480 244 114 114 139 chr1 39171580 39171659 -243022005 - MER51A LTR ERV1 -383 251 175 529 290 23 12 chr1 39171700 39171880 -243021784 - MER51A LTR ERV1 -339 301 1 310 318 54 0 chr1 39171882 39172030 -243021634 - MIR SINE MIR -25 237 82 216 350 61 18 chr1 39172238 39172273 -243021391 - L2 LINE L2 -240 3032 3000 1750 123 123 0 chr1 39172273 39172542 -243021122 - AluSx SINE Alu 0 302 1 216 350 61 18 chr1 39172542 39172669 -243020995 - L2 LINE L2 -272 3000 2863 326 244 42 101 chr1 39172810 39172929 -243020735 + Charlie1 DNA MER1_type 1 112 -2649 801 178 89 0 chr1 39172986 39173132 -243020532 - FAM SINE Alu -7 42 1 630 220 23 35 chr1 39173132 39173305 -243020359 + Charlie1 DNA MER1_type 1906 2076 -685 986 187 25 5 chr1 39173332 39173530 -243020134 - L1MB2 LINE L1 -50 6121 5920 243 0 0 0 chr1 39173577 39173604 -243020060 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 1805 138 0 0 chr1 39173617 39173863 -243019801 - AluSq SINE Alu -47 266 21 2475 128 2 33 chr1 39173938 39174053 -243019611 - L1MB2 LINE L1 -240 5931 5814 2215 127 0 0 chr1 39174053 39174361 -243019303 + AluSx SINE Alu 1 308 -4 2475 128 2 33 chr1 39174361 39174644 -243019020 - L1MB2 LINE L1 -357 5814 5545 4936 174 74 61 chr1 39174645 39174764 -243018900 + Charlie1a DNA MER1_type 100 216 -2545 2329 62 10 7 chr1 39174764 39175055 -243018609 - AluY SINE Alu -19 292 1 4936 174 74 61 chr1 39175055 39175168 -243018496 + Charlie1a DNA MER1_type 216 326 -2435 2294 115 3 0 chr1 39175168 39175472 -243018192 - AluSx SINE Alu -7 305 1 4936 174 74 61 chr1 39175472 39175588 -243018076 + Charlie1a DNA MER1_type 326 439 -2322 2281 115 3 0 chr1 39175588 39175900 -243017764 - AluSq SINE Alu 0 313 1 4936 174 74 61 chr1 39175900 39176404 -243017260 + Charlie1a DNA MER1_type 439 935 -1826 1945 116 6 69 chr1 39176404 39176499 -243017165 + AluSx SINE Alu 1 100 -212 2128 131 3 3 chr1 39176499 39176804 -243016860 + AluSq SINE Alu 1 305 -8 1945 116 6 69 chr1 39176804 39177028 -243016636 + AluSx SINE Alu 100 300 -12 4936 174 74 61 chr1 39177028 39177252 -243016412 + Charlie1a DNA MER1_type 935 1201 -1560 1899 123 62 0 chr1 39177252 39177544 -243016120 + AluSx SINE Alu 1 310 -2 4936 174 74 61 chr1 39177544 39177716 -243015948 + Charlie1a DNA MER1_type 1201 1369 -86 555 124 9 53 chr1 39177725 39177741 -243015923 - AluSg/x SINE Alu -1 308 293 1905 101 28 103 chr1 39177741 39177922 -243015742 - L1MA2 LINE L1 0 6304 6168 2208 98 3 17 chr1 39177922 39178219 -243015445 - AluSp SINE Alu -20 293 1 1905 101 28 103 chr1 39178219 39178434 -243015230 - L1MA2 LINE L1 -136 6168 5938 555 124 9 53 chr1 39178434 39178530 -243015134 - AluSg/x SINE Alu -16 293 201 516 117 0 78 chr1 39178678 39178789 -243014875 - L1 LINE L1 -1903 4243 4142 264 77 0 0 chr1 39178803 39178842 -243014822 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2076 111 7 0 chr1 39178845 39179125 -243014539 - AluSq SINE Alu -31 282 1 270 204 0 0 chr1 39179127 39179181 -243014483 + Charlie1a DNA MER1_type 1398 1451 -4 202 309 62 0 chr1 39179226 39179273 -243014391 - L2 LINE L2 -609 2705 2662 210 37 0 0 chr1 39179273 39179300 -243014364 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 202 309 62 0 chr1 39179300 39179349 -243014315 - L2 LINE L2 -652 2662 2603 531 286 141 60 chr1 39179415 39179648 -243014016 + L1MC4a LINE L1 5423 5636 -2172 279 0 0 0 chr1 39179648 39179679 -243013985 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 286 141 60 chr1 39179679 39179839 -243013825 + L1MC4a LINE L1 5636 5782 -2026 1517 201 3 20 chr1 39179839 39180132 -243013532 + AluJb SINE Alu 1 288 -24 531 286 141 60 chr1 39180132 39180205 -243013459 + L1MC4a LINE L1 5782 5928 -1880 2473 62 0 38 chr1 39180216 39180536 -243013128 + AluY SINE Alu 1 308 -3 390 21 0 0 chr1 39180544 39180591 -243013073 + (TG)n Simple_repeat Simple_repeat 2 48 0 1766 133 3 58 chr1 39181169 39181463 -243012201 - AluJo SINE Alu -25 287 10 460 179 49 16 chr1 39181523 39181646 -243012018 - MIR SINE MIR -83 179 53 1769 141 8 0 chr1 39181658 39181921 -243011743 - AluSx SINE Alu -6 306 42 415 270 29 46 chr1 39181935 39182109 -243011555 + MIR3 SINE MIR 1 171 -37 1818 151 14 7 chr1 39182214 39182533 -243011131 + AluSx SINE Alu 1 321 0 2339 77 0 27 chr1 39182570 39182869 -243010795 - AluSc SINE Alu -18 291 1 476 209 108 8 chr1 39183034 39183163 -243010501 - FLAM_C SINE Alu 0 143 2 2514 62 0 3 chr1 39183509 39183814 -243009850 + AluY SINE Alu 1 304 -7 1860 180 3 0 chr1 39184059 39184365 -243009299 - AluJo SINE Alu -4 308 2 1799 187 15 12 chr1 39184422 39184765 -243008899 + MLT1E1 LTR MaLR 1 344 -310 657 156 18 0 chr1 39184769 39184901 -243008763 + AluSg/x SINE Alu 171 304 0 935 221 17 0 chr1 39184901 39185073 -243008591 + MLT1E1 LTR MaLR 339 513 -141 1694 123 0 0 chr1 39185110 39185337 -243008327 + AluSx SINE Alu 1 227 -85 767 116 16 8 chr1 39185437 39185581 -243008083 + AluY SINE Alu 161 305 0 935 221 17 0 chr1 39185581 39185753 -243007911 + MLT1E1 LTR MaLR 339 513 -141 2218 108 14 0 chr1 39185790 39186086 -243007578 + AluSx SINE Alu 1 300 -12 318 26 0 0 chr1 39186098 39186137 -243007527 + (TG)n Simple_repeat Simple_repeat 2 40 0 1147 244 145 41 chr1 39186158 39186523 -243007141 - MLT1H LTR MaLR -13 536 134 2357 211 16 2 chr1 39186525 39187031 -243006633 + L1ME2 LINE L1 5652 6164 0 183 241 241 0 chr1 39187106 39187189 -243006475 + MIR SINE MIR 70 172 -90 4506 151 24 109 chr1 39187190 39187228 -243006436 - L1MB3 LINE L1 0 6183 6143 2263 119 3 3 chr1 39187228 39187540 -243006124 + AluSx SINE Alu 1 312 0 4506 151 24 109 chr1 39187540 39187852 -243005812 - L1MB3 LINE L1 -40 6143 5806 2329 92 6 19 chr1 39187852 39188167 -243005497 - AluSq SINE Alu -2 311 1 4506 151 24 109 chr1 39188167 39188693 -243004971 - L1MB3 LINE L1 -377 5806 5237 2333 107 0 3 chr1 39188693 39189002 -243004662 - AluSx SINE Alu -4 308 1 1976 128 13 32 chr1 39189012 39189324 -243004340 - AluSx SINE Alu -6 306 1 4506 151 24 109 chr1 39189324 39189336 -243004328 - L1MB3 LINE L1 -955 5228 5217 2418 96 0 6 chr1 39189336 39189648 -243004016 - AluSg SINE Alu 0 310 1 4506 151 24 109 chr1 39189648 39189863 -243003801 - L1MB3 LINE L1 -966 5217 4985 1751 183 3 0 chr1 39189863 39190148 -243003516 - AluJb SINE Alu -23 289 4 4506 151 24 109 chr1 39190148 39190177 -243003487 - L1MB3 LINE L1 -1198 4985 5175 770 139 0 76 chr1 39190177 39190321 -243003343 - FLAM_C SINE Alu 0 133 1 4506 151 24 109 chr1 39190321 39190461 -243003203 - L1MB3 LINE L1 -1007 5176 5026 2527 47 10 7 chr1 39190461 39190762 -243002902 + AluY SINE Alu 1 302 -9 2041 73 45 42 chr1 39190891 39191177 -243002487 - AluSc SINE Alu -22 287 1 4467 203 19 63 chr1 39191177 39191741 -243001923 - L1MB3 LINE L1 -1190 4956 4368 1492 121 0 0 chr1 39191741 39191985 -243001679 - AluSg/x SINE Alu 0 310 87 4467 203 19 63 chr1 39191985 39192482 -243001182 - L1MB3 LINE L1 -1778 4368 3949 1878 155 7 17 chr1 39192482 39192779 -243000885 + AluJb SINE Alu 1 294 -18 4467 203 19 63 chr1 39192779 39192884 -243000780 - L1MB3 LINE L1 -2197 3949 3841 1030 185 0 0 chr1 39192902 39193075 -243000589 - FRAM SINE Alu -3 173 1 332 169 0 46 chr1 39193078 39193143 -243000521 - L1MB3 LINE L1 -2298 3848 3787 863 237 12 0 chr1 39193175 39193344 -243000320 + FAM SINE Alu 5 175 0 306 172 35 11 chr1 39193344 39193424 -243000240 + GA-rich Low_complexity Low_complexity 7 91 0 195 42 0 0 chr1 39193424 39193448 -243000216 + (CAAG)n Simple_repeat Simple_repeat 2 25 0 2389 208 21 51 chr1 39193448 39193632 -243000032 + MLT2B3 LTR ERVL 56 244 -310 2697 39 0 3 chr1 39193632 39193944 -242999720 - AluY SINE Alu 0 311 1 2389 208 21 51 chr1 39193944 39194273 -242999391 + MLT2B3 LTR ERVL 244 554 0 1954 192 25 102 chr1 39194274 39194942 -242998722 - L1MB3 LINE L1 -2352 3794 3178 35 41 0 0 chr1 39195034 39195083 -242998581 + AT_rich Low_complexity Low_complexity 1 49 0 2124 101 4 0 chr1 39195199 39195475 -242998189 + AluSx SINE Alu 1 277 -35 1056 101 16 53 chr1 39195592 39195730 -242997934 + L1MB3 LINE L1 6001 6132 -51 2429 48 7 7 chr1 39195730 39196025 -242997639 + AluY SINE Alu 1 295 -16 1056 101 16 53 chr1 39196025 39196075 -242997589 + L1MB3 LINE L1 6132 6182 -1 2324 72 0 78 chr1 39196087 39196421 -242997243 + AluSg SINE Alu 3 310 0 299 240 0 0 chr1 39196428 39196503 -242997161 + L1ME3A LINE L1 6095 6169 -1 846 179 92 123 chr1 39196514 39196814 -242996850 + L1ME LINE L1 5514 5793 -328 1471 107 10 0 chr1 39196815 39197011 -242996653 + AluSq SINE Alu 2 199 -114 1127 153 14 69 chr1 39197399 39197502 -242996162 - LTR47A LTR ERVL 0 452 366 867 183 6 57 chr1 39197502 39197677 -242995987 - FRAM SINE Alu 0 166 1 1127 153 14 69 chr1 39197677 39197789 -242995875 - LTR47A LTR ERVL -86 366 249 1321 152 87 4 chr1 39197945 39198175 -242995489 - LTR47A LTR ERVL -203 249 1 185 189 27 0 chr1 39198321 39198358 -242995306 + MIR SINE MIR 218 255 -7 2128 149 0 110 chr1 39198403 39198735 -242994929 - MLT2D LTR ERVL 0 414 146 2074 125 0 14 chr1 39198735 39199023 -242994641 - AluSx SINE Alu -28 284 1 2128 149 0 110 chr1 39199023 39199154 -242994510 - MLT2D LTR ERVL -268 146 2 1011 165 31 10 chr1 39199294 39199488 -242994176 - AluJb SINE Alu 0 312 115 230 308 87 19 chr1 39199905 39200009 -242993655 + Charlie8 DNA MER1_type 2 112 -2305 1759 156 62 29 chr1 39200009 39200057 -242993607 + L1MB8 LINE L1 5779 5824 -354 2198 95 7 20 chr1 39200057 39200361 -242993303 + AluSc SINE Alu 1 300 -9 1759 156 62 29 chr1 39200361 39200621 -242993043 + L1MB8 LINE L1 5824 6106 -72 2090 136 3 0 chr1 39200621 39200916 -242992748 + AluSx SINE Alu 9 304 -8 1759 156 62 29 chr1 39200916 39200986 -242992678 + L1MB8 LINE L1 6106 6172 -6 2908 116 25 2 chr1 39201000 39201447 -242992217 + L1MB2 LINE L1 5636 6092 -79 198 0 0 0 chr1 39201447 39201469 -242992195 + (T)n Simple_repeat Simple_repeat 1 22 0 265 244 85 0 chr1 39201620 39201702 -242991962 + L2 LINE L2 3225 3313 0 576 149 0 0 chr1 39201883 39201970 -242991694 - AluS SINE Alu -225 88 2 312 315 251 3 chr1 39201971 39202266 -242991398 + L2 LINE L2 2326 2693 -621 495 132 0 0 chr1 39202266 39202360 -242991304 - AluS SINE Alu 0 317 224 419 314 14 88 chr1 39202363 39202560 -242991104 + L2 LINE L2 2702 2871 -443 2563 66 0 0 chr1 39202560 39202862 -242990802 - AluY SINE Alu 0 311 10 419 314 14 88 chr1 39202862 39202960 -242990704 + L2 LINE L2 2871 2975 -339 603 92 0 0 chr1 39203211 39203298 -242990366 - Alu SINE Alu 0 310 224 1087 137 0 0 chr1 39203298 39203444 -242990220 - AluSq/x SINE Alu -167 146 1 276 248 232 8 chr1 39203444 39203569 -242990095 + L2 LINE L2 3161 3313 0 1480 199 0 36 chr1 39203714 39204016 -242989648 + AluJo SINE Alu 1 291 -21 2178 110 0 0 chr1 39204168 39204489 -242989175 - AluSx SINE Alu 0 321 1 700 186 65 0 chr1 39204598 39204722 -242988942 - FLAM_A SINE Alu -1 132 1 365 329 117 30 chr1 39204777 39205363 -242988301 + L2 LINE L2 2594 3225 -47 220 139 0 23 chr1 39206277 39206320 -242987344 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 876 108 0 0 chr1 39206645 39206775 -242986889 + (TA)n Simple_repeat Simple_repeat 1 130 0 311 340 85 16 chr1 39206839 39207145 -242986519 + L1MC4a LINE L1 5040 5366 -780 279 133 0 0 chr1 39207269 39207314 -242986350 + (TCTCCC)n Simple_repeat Simple_repeat 4 48 0 189 283 0 0 chr1 39207335 39207381 -242986283 - L2 LINE L2 0 3272 3227 394 247 11 0 chr1 39207582 39207671 -242985993 + MER91B DNA MER1_type 91 180 -10 314 291 170 28 chr1 39207763 39207945 -242985719 - MIR SINE MIR -54 208 1 1958 119 38 10 chr1 39208240 39208533 -242985131 + AluSx SINE Alu 1 301 -11 200 31 62 0 chr1 39208534 39208566 -242985098 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1804 145 10 21 chr1 39208610 39208809 -242984855 + AluJb SINE Alu 1 198 -114 2496 209 162 35 chr1 39208809 39209542 -242984122 - LTR1B LTR ERV1 0 826 1 1804 145 10 21 chr1 39209542 39209631 -242984033 + AluJb SINE Alu 198 286 -26 351 113 0 0 chr1 39209632 39209685 -242983979 + (CA)n Simple_repeat Simple_repeat 2 54 0 2120 142 0 0 chr1 39209803 39210099 -242983565 + AluSx SINE Alu 1 296 -16 259 208 0 0 chr1 39210099 39210147 -242983517 + AluJ/monomer SINE Alu 1 48 -253 1155 153 37 41 chr1 39210251 39210433 -242983231 + LTR2B LTR ERV1 250 432 -58 2646 46 0 3 chr1 39210433 39210736 -242982928 - AluY SINE Alu -8 303 2 1155 153 37 41 chr1 39210736 39210795 -242982869 + LTR2B LTR ERV1 432 490 0 4059 71 36 29 chr1 39210795 39211374 -242982290 + Harlequin LTR ERV1 1 583 -6313 462 225 33 25 chr1 39211500 39211620 -242982044 - FLAM_C SINE Alu -12 121 1 1226 268 85 20 chr1 39211622 39212114 -242981550 + L1MC4a LINE L1 5393 5916 -1892 261 71 0 0 chr1 39212781 39212823 -242980841 + Alu SINE Alu 258 299 -1 1606 156 7 78 chr1 39212868 39213000 -242980664 + AluJo SINE Alu 6 146 -166 1836 128 27 40 chr1 39213000 39213298 -242980366 - AluSg SINE Alu -16 294 1 1606 156 7 78 chr1 39213298 39213473 -242980191 + AluJo SINE Alu 146 291 -21 656 174 33 144 chr1 39213476 39213554 -242980110 + L1ME2 LINE L1 5821 5906 -258 2192 101 0 0 chr1 39213554 39213830 -242979834 + AluSg1 SINE Alu 1 276 -33 249 33 0 0 chr1 39213830 39213860 -242979804 + (CA)n Simple_repeat Simple_repeat 1 30 0 656 174 33 144 chr1 39213860 39214050 -242979614 + L1ME2 LINE L1 5904 6060 -104 1425 136 94 45 chr1 39214053 39214361 -242979303 + MER65A LTR ERV1 1 323 -122 31 0 0 0 chr1 39214652 39214683 -242978981 + AT_rich Low_complexity Low_complexity 1 31 0 826 138 17 0 chr1 39214881 39214997 -242978667 - AluJb SINE Alu -188 124 7 2051 125 0 17 chr1 39215006 39215329 -242978335 - AluSx SINE Alu 0 318 1 2065 145 0 0 chr1 39215478 39215775 -242977889 + AluSx SINE Alu 1 297 -15 1710 163 17 7 chr1 39215943 39216238 -242977426 - AluJb SINE Alu -14 298 1 2024 115 34 3 chr1 39216242 39216537 -242977127 - AluSq SINE Alu -9 304 1 739 75 150 33 chr1 39216856 39216976 -242976688 - AluSq/x SINE Alu -176 137 4 2391 63 7 0 chr1 39217102 39217388 -242976276 - AluY SINE Alu -22 289 2 868 260 109 23 chr1 39217389 39217739 -242975925 - L2 LINE L2 -1171 2143 1764 2059 134 7 16 chr1 39217742 39218049 -242975615 + AluSx SINE Alu 1 304 -8 2093 121 3 23 chr1 39218049 39218353 -242975311 + AluSg SINE Alu 1 299 -11 666 62 0 0 chr1 39218526 39218607 -242975057 - HY3 scRNA scRNA -20 81 1 215 363 38 19 chr1 39218609 39218769 -242974895 - L2 LINE L2 -1767 1547 1385 2319 95 0 3 chr1 39218769 39219065 -242974599 + AluSx SINE Alu 1 295 -17 358 255 48 58 chr1 39219097 39219305 -242974359 - L2 LINE L2 -2416 898 693 2021 118 28 3 chr1 39219306 39219594 -242974070 - AluSc SINE Alu -14 295 1 1050 78 8 0 chr1 39219596 39219725 -242973939 - AluSq/x SINE Alu -181 132 3 531 191 22 96 chr1 39219726 39219862 -242973802 + AluJb SINE Alu 186 311 -1 2283 81 3 19 chr1 39220246 39220553 -242973111 - AluSq SINE Alu -11 302 1 319 202 18 119 chr1 39221161 39221229 -242972435 + MER5A DNA MER1_type 9 64 -125 1730 143 79 4 chr1 39221229 39221509 -242972155 + AluSx SINE Alu 1 301 -11 319 202 18 119 chr1 39221509 39221549 -242972115 + MER5A DNA MER1_type 64 106 -83 280 222 86 0 chr1 39221656 39221737 -242971927 + MIR SINE MIR 175 262 0 1657 86 9 14 chr1 39221972 39222193 -242971471 - AluSg SINE Alu -90 220 1 1071 81 0 7 chr1 39222194 39222330 -242971334 - AluSq/x SINE Alu -178 135 1 228 224 0 0 chr1 39223347 39223445 -242970219 + (CCG)n Simple_repeat Simple_repeat 3 100 0 31 0 0 0 chr1 39223892 39223923 -242969741 + GC_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 39224061 39224100 -242969564 + GC_rich Low_complexity Low_complexity 1 39 0 1875 128 22 0 chr1 39225918 39226192 -242967472 - AluSx SINE Alu -32 280 1 2063 131 0 7 chr1 39226200 39226505 -242967159 - AluSq SINE Alu -10 303 1 1945 141 10 13 chr1 39227199 39227497 -242966167 - AluSx SINE Alu -15 297 1 1202 159 198 31 chr1 39227498 39227756 -242965908 - AluJo SINE Alu -1 301 1 2132 118 6 6 chr1 39228410 39228723 -242964941 - AluSq SINE Alu 0 313 1 207 0 0 0 chr1 39229230 39229253 -242964411 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 192 158 0 0 chr1 39231901 39231939 -242961725 + T-rich Low_complexity Low_complexity 1 38 0 2359 72 10 3 chr1 39232655 39232946 -242960718 + AluSg SINE Alu 1 293 -17 224 333 39 0 chr1 39236299 39236377 -242957287 + L2 LINE L2 3098 3178 -94 2358 80 0 29 chr1 39236382 39236696 -242956968 - AluSc SINE Alu -4 305 1 476 209 108 8 chr1 39236861 39236990 -242956674 - FLAM_C SINE Alu 0 143 2 2506 62 0 3 chr1 39237336 39237640 -242956024 + AluY SINE Alu 1 303 -8 1121 216 0 4 chr1 39237885 39238112 -242955552 - AluJo SINE Alu -4 308 83 464 132 15 0 chr1 39238365 39238433 -242955231 - AluSq/x SINE Alu -194 118 50 2028 149 0 0 chr1 39238705 39238993 -242954671 - AluSx SINE Alu -24 288 1 7513 87 39 29 chr1 39238994 39239238 -242954426 - MER4-int LTR ERV1 -128 6470 6230 2229 110 13 0 chr1 39239238 39239537 -242954127 + AluSp SINE Alu 1 303 -10 7513 87 39 29 chr1 39239537 39240229 -242953435 - MER4-int LTR ERV1 -368 6230 5517 2326 92 10 0 chr1 39240229 39240521 -242953143 - AluY SINE Alu -16 295 1 7513 87 39 29 chr1 39240521 39240739 -242952925 - MER4-int LTR ERV1 -1081 5517 5303 886 159 115 0 chr1 39240751 39240908 -242952756 - AluSq SINE Alu -2 311 137 918 78 8 8 chr1 39240911 39241040 -242952624 - MER4-int LTR ERV1 -5477 1121 993 375 135 0 77 chr1 39241038 39241179 -242952485 - MER4-int LTR ERV1 -5712 886 687 * 1901 138 35 73 chr1 39241204 39241794 -242951870 - MER4-int LTR ERV1 -5789 809 98 1230 132 0 37 chr1 39241898 39242087 -242951577 + AluSg/x SINE Alu 116 297 -15 2346 96 0 0 chr1 39242097 39242398 -242951266 + AluSx SINE Alu 1 301 -11 1691 168 36 7 chr1 39242406 39242709 -242950955 - AluJb SINE Alu 0 312 1 200 253 11 126 chr1 39242764 39242812 -242950852 + L2 LINE L2 2265 2301 -1013 2055 44 56 11 chr1 39242812 39243111 -242950553 + AluY SINE Alu 1 311 0 200 253 11 126 chr1 39243111 39243148 -242950516 + L2 LINE L2 2301 2341 -973 228 114 29 0 chr1 39243153 39243188 -242950476 - Alu SINE Alu -85 217 182 2370 85 3 3 chr1 39243367 39243661 -242950003 - AluSp SINE Alu -19 294 1 964 106 43 0 chr1 39243783 39243924 -242949740 - L1PA7 LINE L1 0 6154 6008 2531 50 0 7 chr1 39244120 39244419 -242949245 + AluY SINE Alu 1 297 -14 1277 82 0 0 chr1 39244430 39244588 -242949076 + AluY SINE Alu 150 307 -4 366 200 0 0 chr1 39245063 39245123 -242948541 + U4 snRNA snRNA 1 60 -85 2119 132 0 6 chr1 39245214 39245525 -242948139 + AluSg SINE Alu 1 309 -1 477 161 0 0 chr1 39245810 39245897 -242947767 + (CA)n Simple_repeat Simple_repeat 2 88 0 2188 102 0 0 chr1 39245897 39246182 -242947482 - AluSg SINE Alu -25 285 1 1728 120 0 4 chr1 39246248 39246490 -242947174 - AluSg1 SINE Alu -18 291 51 3035 173 52 83 chr1 39246613 39247419 -242946245 - Charlie1a DNA MER1_type -531 924 144 1139 205 66 4 chr1 39247435 39247679 -242945985 - L1MB5 LINE L1 -8 6166 5908 266 157 0 59 chr1 39247684 39247735 -242945929 - Alu SINE Alu -15 287 240 1547 156 3 25 chr1 39247736 39248019 -242945645 - L1MB5 LINE L1 -277 5897 5621 480 179 186 97 chr1 39248019 39248164 -242945500 - Charlie1a DNA MER1_type -1297 158 1 758 214 0 23 chr1 39248278 39248409 -242945255 + FLAM_A SINE Alu 1 128 -5 22 56 0 0 chr1 39249412 39249448 -242944216 + AT_rich Low_complexity Low_complexity 1 36 0 2397 89 0 16 chr1 39249449 39249764 -242943900 - AluY SINE Alu -1 310 1 1008 184 0 0 chr1 39249767 39249925 -242943739 - AluJo/FRAM SINE Alu -8 294 137 1310 177 40 4 chr1 39249927 39250175 -242943489 - AluJo SINE Alu 0 312 56 1766 148 16 23 chr1 39250332 39250636 -242943028 - AluJo SINE Alu -8 304 3 2485 64 0 13 chr1 39251753 39252067 -242941597 - AluY SINE Alu -1 310 1 1229 189 13 4 chr1 39252556 39252789 -242940875 - Zaphod DNA AcHobo -8 4023 3789 644 233 42 21 chr1 39252781 39252970 -242940694 - Zaphod DNA AcHobo -588 3443 3251 * 904 158 0 7 chr1 39253022 39253168 -242940496 - AluSc SINE Alu -9 300 156 807 231 39 5 chr1 39253169 39253377 -242940287 - Zaphod DNA AcHobo -782 3249 3035 1996 123 3 17 chr1 39253402 39253702 -242939962 - AluSg1 SINE Alu -13 296 1 2132 120 7 10 chr1 39253702 39254011 -242939653 - AluSx SINE Alu -4 308 1 1161 134 0 6 chr1 39254146 39254318 -242939346 - AluSp SINE Alu -14 299 129 1063 195 11 50 chr1 39254600 39254882 -242938782 - AluSx SINE Alu -41 271 1 1962 119 21 3 chr1 39254896 39255249 -242938415 - AluSx SINE Alu 0 375 18 2093 104 10 3 chr1 39255627 39255936 -242937728 - AluSx SINE Alu 0 312 1 33 43 0 0 chr1 39256771 39256818 -242936846 + AT_rich Low_complexity Low_complexity 1 47 0 1889 151 21 7 chr1 39256912 39257203 -242936461 + AluJo SINE Alu 1 295 -17 1825 148 65 0 chr1 39257567 39257858 -242935806 + AluSx SINE Alu 1 310 -2 277 316 86 11 chr1 39257858 39258032 -242935632 + MER117 DNA MER1_type 1 187 -10 25 0 0 0 chr1 39258127 39258152 -242935512 + AT_rich Low_complexity Low_complexity 1 25 0 2323 106 3 0 chr1 39258374 39258677 -242934987 + AluSg SINE Alu 1 304 -6 1259 141 21 5 chr1 39258684 39258875 -242934789 + AluJo SINE Alu 1 194 -118 722 89 20 10 chr1 39258875 39258976 -242934688 - AluSp/q SINE Alu -14 299 198 488 146 11 0 chr1 39259091 39259180 -242934484 + CT-rich Low_complexity Low_complexity 2 91 0 830 186 0 0 chr1 39259192 39259316 -242934348 - AluJb SINE Alu -187 125 2 295 146 73 0 chr1 39259316 39259371 -242934293 - MLT1C-int LTR MaLR -1312 59 1 1550 226 81 34 chr1 39259371 39259817 -242933847 - MLT1C LTR MaLR 0 467 1 27 29 0 0 chr1 39259844 39259878 -242933786 + AT_rich Low_complexity Low_complexity 1 34 0 2289 95 0 0 chr1 39259882 39260178 -242933486 + AluY SINE Alu 1 296 -15 907 174 3 37 chr1 39260219 39260522 -242933142 + L1MA7 LINE L1 5874 6279 -12 220 27 54 0 chr1 39260532 39260569 -242933095 + (TA)n Simple_repeat Simple_repeat 2 40 0 2363 158 93 7 chr1 39260571 39261033 -242932631 - L1MB4 LINE L1 -33 6147 5646 920 206 50 63 chr1 39261037 39261380 -242932284 + MSTB2 LTR MaLR 5 457 0 2165 162 17 127 chr1 39261380 39261435 -242932229 - L1MB4 LINE L1 -530 5650 5591 1774 191 0 0 chr1 39261435 39261739 -242931925 - AluJb SINE Alu -8 304 1 2165 162 17 127 chr1 39261739 39261871 -242931793 - L1MB4 LINE L1 -589 5591 5446 1784 137 0 55 chr1 39261871 39262164 -242931500 - AluSx SINE Alu 0 312 36 2165 162 17 127 chr1 39262164 39262211 -242931453 - L1MB4 LINE L1 -734 5446 5395 2507 71 3 3 chr1 39262211 39262521 -242931143 - AluY SINE Alu -1 310 1 2165 162 17 127 chr1 39262521 39262845 -242930819 - L1MB4 LINE L1 -785 5395 5198 2855 19 0 0 chr1 39262845 39263160 -242930504 - AluYb8 SINE Alu -3 315 1 2165 162 17 127 chr1 39263160 39263480 -242930184 - L1MB4 LINE L1 -982 5198 4844 1399 212 21 75 chr1 39263484 39263871 -242929793 - MLT1A2 LTR MaLR -8 366 1 1741 216 26 16 chr1 39263876 39264306 -242929358 - L1MB4 LINE L1 -1303 4843 4410 * 2131 233 16 31 chr1 39264304 39264359 -242929305 + L1 LINE L1 3843 3897 -2249 1356 143 143 78 chr1 39264359 39264681 -242928983 - MER2 DNA MER2_type 0 344 2 2131 233 16 31 chr1 39264681 39265205 -242928459 + L1 LINE L1 3897 4413 -1733 517 285 17 17 chr1 39265212 39265384 -242928280 - L1MC5 LINE L1 -1095 6866 6695 1465 165 29 70 chr1 39265480 39265795 -242927869 - AluJo SINE Alu -10 302 1 871 124 0 29 chr1 39266084 39266221 -242927443 - FLAM_C SINE Alu -1 142 10 217 0 0 57 chr1 39266448 39266483 -242927181 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2219 97 0 0 chr1 39266489 39266767 -242926897 - AluSg SINE Alu -32 278 1 458 171 24 0 chr1 39266769 39266851 -242926813 - AluJ/FRAM SINE Alu -13 299 216 220 350 142 16 chr1 39266858 39267041 -242926623 + L2 LINE L2 2381 2586 -728 191 320 120 0 chr1 39267822 39267897 -242925767 - L2 LINE L2 0 3272 3189 657 272 141 10 chr1 39268070 39268360 -242925304 - L2 LINE L2 -606 2708 2381 1206 206 14 9 chr1 39268463 39268681 -242924983 - MER20 DNA MER1_type 0 219 1 2015 136 0 0 chr1 39268808 39269129 -242924535 - AluSx SINE Alu 0 323 3 1861 137 24 10 chr1 39269303 39269595 -242924069 - AluJo SINE Alu -16 296 1 702 156 16 8 chr1 39269596 39269724 -242923940 + L1MB8 LINE L1 6045 6173 -5 523 246 18 0 chr1 39269825 39269960 -242923704 - L1ME1 LINE L1 0 6184 6039 331 189 78 22 chr1 39269960 39270050 -242923614 - L1ME1 LINE L1 -484 5682 5598 * 470 152 71 0 chr1 39270045 39270144 -242923520 - L1ME1 LINE L1 -842 5304 5199 391 196 0 72 chr1 39270147 39270244 -242923420 - FLAM_A SINE Alu -2 131 42 538 136 19 10 chr1 39270244 39270347 -242923317 - L1ME1 LINE L1 -951 5195 5092 2215 107 17 7 chr1 39270498 39270798 -242922866 - AluSq SINE Alu -10 303 1 1894 165 0 13 chr1 39271043 39271352 -242922312 - 7SLRNA srpRNA srpRNA -5 315 11 2090 120 0 7 chr1 39271371 39271662 -242922002 - AluSx SINE Alu -22 290 2 1834 172 0 14 chr1 39271868 39272164 -242921500 - AluJo SINE Alu -15 297 6 2093 123 0 10 chr1 39272179 39272481 -242921183 - AluSx SINE Alu -13 299 1 2136 86 57 0 chr1 39272734 39273014 -242920650 + AluY SINE Alu 1 296 -15 240 277 42 34 chr1 39273147 39273266 -242920398 + L1M4 LINE L1 4497 4616 -1530 1179 284 90 35 chr1 39273861 39274340 -242919324 - L2 LINE L2 -5 3308 2804 877 180 73 22 chr1 39274345 39274523 -242919141 - MER20 DNA MER1_type -30 189 3 1233 274 75 22 chr1 39274531 39275038 -242918626 - HERVL LTR ERVL -3111 1885 1347 364 291 72 64 chr1 39275332 39275597 -242918067 - HERVL LTR ERVL -4731 1033 767 269 304 0 0 chr1 39275609 39275688 -242917976 - HERVL LTR ERVL -5036 618 540 2376 102 0 3 chr1 39275705 39276019 -242917645 - AluSq SINE Alu 0 313 1 236 109 0 22 chr1 39276031 39276077 -242917587 - Alu SINE Alu 0 302 258 287 303 50 0 chr1 39276077 39276176 -242917488 - HERVL LTR ERVL -5197 567 464 627 154 185 99 chr1 39276203 39276365 -242917299 + AluJb SINE Alu 124 299 -13 806 166 43 111 chr1 39276763 39277016 -242916648 - LTR41 LTR ERVL -17 756 521 1026 189 5 25 chr1 39277095 39277291 -242916373 + AluJb SINE Alu 99 290 -22 874 194 26 11 chr1 39277530 39277728 -242915936 - LTR41 LTR ERVL -564 231 5 4347 240 64 66 chr1 39277733 39277906 -242915758 - L1MEc LINE L1 -4588 1808 1636 840 212 0 0 chr1 39277906 39278038 -242915626 - FLAM_A SINE Alu 0 133 2 4347 240 64 66 chr1 39278038 39278142 -242915522 - L1MEc LINE L1 -4760 1636 1533 3763 106 30 126 chr1 39278142 39278657 -242915007 - MER51A LTR ERV1 0 634 202 2301 97 0 3 chr1 39278657 39278966 -242914698 - AluY SINE Alu -2 309 2 3763 106 30 126 chr1 39278966 39279151 -242914513 - MER51A LTR ERV1 -432 202 1 4347 240 64 66 chr1 39279151 39280137 -242913527 - L1MEc LINE L1 -4863 1533 547 2134 131 3 0 chr1 39280137 39280435 -242913229 + AluSx SINE Alu 1 299 -13 4347 240 64 66 chr1 39280435 39280950 -242912714 - L1MEc LINE L1 -5849 547 32 365 257 9 106 chr1 39280987 39281073 -242912591 + MER58 DNA MER1_type 1 75 -140 1725 152 9 35 chr1 39281073 39281251 -242912413 - AluJb SINE Alu -5 307 139 2443 88 0 0 chr1 39281251 39281557 -242912107 - AluY SINE Alu -5 306 1 1725 152 9 35 chr1 39281557 39281693 -242911971 - AluJb SINE Alu -173 139 1 365 257 9 106 chr1 39281693 39281719 -242911945 + MER58 DNA MER1_type 75 102 -113 906 217 0 0 chr1 39281947 39282099 -242911565 - FRAM SINE Alu -14 152 1 1438 102 0 39 chr1 39282120 39282326 -242911338 - AluSc SINE Alu -111 198 1 1684 73 0 0 chr1 39282579 39282799 -242910865 - HERVH LTR ERV1 -7493 220 1 2965 87 92 5 chr1 39282801 39283213 -242910451 - LTR7 LTR ERV1 -2 448 1 24682 57 15 13 chr1 39283213 39286015 -242907649 - HERVH LTR ERV1 -1457 5439 2629 2511 84 3 0 chr1 39286015 39286325 -242907339 + AluSp SINE Alu 1 311 -2 24682 57 15 13 chr1 39286325 39286614 -242907050 - HERVH LTR ERV1 -4267 2629 2342 412 70 91 7 chr1 39289196 39289339 -242904325 + (TA)n Simple_repeat Simple_repeat 2 156 0 2251 113 0 0 chr1 39289348 39289650 -242904014 + AluSx SINE Alu 1 302 -10 203 328 0 30 chr1 39290755 39290822 -242902842 - L2 LINE L2 -17 3255 3191 2153 125 0 10 chr1 39290872 39291177 -242902487 - AluSx SINE Alu -10 302 1 26 50 0 0 chr1 39291306 39291346 -242902318 + AT_rich Low_complexity Low_complexity 1 40 0 2260 113 0 3 chr1 39291778 39292079 -242901585 + AluSq SINE Alu 1 300 -13 1679 148 13 46 chr1 39292501 39292806 -242900858 + AluJb SINE Alu 6 300 -12 1740 161 10 23 chr1 39292816 39293126 -242900538 + AluJb SINE Alu 1 306 -6 2242 108 3 7 chr1 39293174 39293480 -242900184 + AluSx SINE Alu 1 305 -7 30 0 0 0 chr1 39293679 39293709 -242899955 + AT_rich Low_complexity Low_complexity 1 30 0 1597 85 0 9 chr1 39293809 39294020 -242899644 + AluSg/x SINE Alu 91 299 -13 1018 116 236 112 chr1 39294183 39294433 -242899231 - MER4A LTR ERV1 -123 541 261 616 113 21 10 chr1 39294433 39294530 -242899134 - MER4A LTR ERV1 -566 98 1 655 169 157 0 chr1 39294754 39294932 -242898732 - L1MB4 LINE L1 -32 6148 5943 2071 181 100 31 chr1 39294934 39295392 -242898272 - LTR2B LTR ERV1 0 490 1 4439 58 0 6 chr1 39295392 39295941 -242897723 - Harlequin LTR ERV1 0 6896 6351 339 47 23 0 chr1 39295941 39295984 -242897680 + LTR7 LTR ERV1 1 44 -406 1962 135 59 3 chr1 39295988 39296328 -242897336 - HERVH LTR ERV1 -33 7680 7322 1376 139 19 0 chr1 39296326 39296542 -242897122 - HERVH LTR ERV1 -1894 5819 5600 * 8600 95 3 9 chr1 39296543 39298631 -242895033 - HERVH LTR ERV1 -1866 5225 3140 * 15442 114 2 10 chr1 39298610 39300907 -242892757 - HERVH LTR ERV1 -4718 2995 718 2040 126 0 3 chr1 39301344 39301645 -242892019 - AluSx SINE Alu -11 301 2 1177 174 4 21 chr1 39301859 39302100 -242891564 - AluSx SINE Alu -75 237 1 922 86 0 0 chr1 39302505 39302621 -242891043 + AluSg SINE Alu 1 116 -194 1439 118 0 42 chr1 39302621 39302859 -242890805 + AluY SINE Alu 68 295 -16 1923 132 7 7 chr1 39302979 39303282 -242890382 - AluSq SINE Alu -10 303 1 2018 117 3 3 chr1 39303319 39303617 -242890047 + AluSp SINE Alu 1 298 -15 2142 102 10 10 chr1 39303619 39303924 -242889740 + AluSq SINE Alu 1 305 -8 1918 66 74 0 chr1 39304103 39304374 -242889290 + AluY SINE Alu 1 291 -20 568 249 228 5 chr1 39304502 39304695 -242888969 - MIR SINE MIR -24 238 3 1965 132 7 7 chr1 39304769 39305065 -242888599 + AluSx SINE Alu 1 296 -16 1837 119 7 26 chr1 39305376 39305679 -242887985 + AluSx SINE Alu 3 299 -13 1243 153 15 0 chr1 39306168 39306370 -242887294 + AluJo SINE Alu 88 292 -20 2249 55 0 7 chr1 39306926 39307242 -242886422 + AluY SINE Alu 1 314 0 1857 143 79 16 chr1 39308145 39308460 -242885204 - MER6 DNA MER2_type -530 335 1 1790 113 10 20 chr1 39308773 39309065 -242884599 + AluSx SINE Alu 3 291 -21 388 220 73 0 chr1 39309203 39309312 -242884352 - L1MEc LINE L1 -3574 2641 2525 2187 95 3 13 chr1 39309336 39309641 -242884023 - AluSx SINE Alu -10 302 1 1355 206 22 0 chr1 39309657 39309933 -242883731 - AluJb SINE Alu -26 286 5 665 184 14 106 chr1 39309982 39310116 -242883548 - L1MEc LINE L1 -4013 2383 2238 1695 168 3 17 chr1 39310116 39310413 -242883251 + AluJb SINE Alu 1 293 -19 665 184 14 106 chr1 39310413 39310450 -242883214 - L1MEc LINE L1 -4158 2238 2233 1567 134 100 7 chr1 39310450 39310719 -242882945 - AluSq SINE Alu -19 294 1 665 184 14 106 chr1 39310719 39310763 -242882901 - L1MEc LINE L1 -4163 2233 2187 2187 91 0 10 chr1 39310863 39311159 -242882505 - AluSg SINE Alu -17 293 1 659 249 28 61 chr1 39311159 39311372 -242882292 - LTR2 LTR ERV1 -243 206 1 225 250 0 0 chr1 39311374 39311426 -242882238 - L1MB4 LINE L1 -239 5941 5890 1552 107 9 0 chr1 39311444 39311668 -242881996 - AluSg SINE Alu -84 226 1 264 30 0 0 chr1 39311673 39311706 -242881958 + (TA)n Simple_repeat Simple_repeat 2 34 0 1730 88 4 66 chr1 39311746 39312018 -242881646 - AluSq SINE Alu -48 265 11 1931 118 14 7 chr1 39312033 39312330 -242881334 - AluSc SINE Alu -10 299 1 963 167 71 5 chr1 39312332 39312542 -242881122 - L1MB4 LINE L1 -272 5908 5685 * 1642 263 57 9 chr1 39312533 39312701 -242880963 - L1MEc LINE L1 -5450 946 787 1914 140 3 7 chr1 39312701 39312994 -242880670 - AluSx SINE Alu -20 292 1 1642 263 57 9 chr1 39312994 39313354 -242880310 - L1MEc LINE L1 -5609 787 393 479 284 52 86 chr1 39313391 39313468 -242880196 + MER34 LTR ERV1 1 79 -463 1654 147 38 3 chr1 39313468 39313761 -242879903 + AluSx SINE Alu 1 303 -9 479 284 52 86 chr1 39313761 39314083 -242879581 + MER34 LTR ERV1 79 347 -195 2028 112 7 0 chr1 39314083 39314378 -242879286 + AluSx SINE Alu 1 297 -15 479 284 52 86 chr1 39314378 39314534 -242879130 + MER34 LTR ERV1 347 507 -35 1025 220 37 15 chr1 39314581 39314849 -242878815 + L1MCa LINE L1 57 330 -6096 791 158 0 15 chr1 39314856 39314989 -242878675 + FLAM_C SINE Alu 2 132 -11 989 139 0 0 chr1 39315009 39315153 -242878511 + AluSq/x SINE Alu 3 146 -167 2025 84 0 34 chr1 39315153 39315449 -242878215 + AluY SINE Alu 1 286 -25 22 0 0 0 chr1 39315458 39315480 -242878184 + AT_rich Low_complexity Low_complexity 1 22 0 1208 190 15 94 chr1 39315480 39315811 -242877853 + AluJo SINE Alu 1 305 -7 246 175 32 0 chr1 39315813 39315876 -242877788 + L1MA10 LINE L1 6262 6326 -8 784 292 87 37 chr1 39316059 39316381 -242877283 - LTR16C LTR ERVL -2 489 152 252 349 36 0 chr1 39316538 39316621 -242877043 + MIR SINE MIR 13 98 -164 2275 85 7 0 chr1 39316622 39316928 -242876736 - AluSx SINE Alu -4 308 1 220 313 0 0 chr1 39316933 39316997 -242876667 + MIR SINE MIR 182 245 -17 250 275 0 14 chr1 39317037 39317106 -242876558 + MARNA DNA Mariner 342 409 -177 2113 103 0 7 chr1 39317267 39317568 -242876096 + AluSx SINE Alu 1 299 -13 2059 98 13 25 chr1 39317797 39318114 -242875550 + AluSq SINE Alu 1 313 0 3819 61 9 11 chr1 39318115 39318657 -242875007 + Harlequin LTR ERV1 1809 2349 -4547 1672 203 73 48 chr1 39318721 39319120 -242874544 + LTR2 LTR ERV1 41 449 0 3156 145 4 119 chr1 39319120 39319808 -242873856 + HERVE LTR ERV1 1 609 -7204 3976 184 54 36 chr1 39319827 39320929 -242872735 + HERVE LTR ERV1 732 4331 -3482 1826 224 58 6 chr1 39320929 39321277 -242872387 + HERV3 LTR ERV1 1722 2087 -6339 1663 278 39 2 chr1 39321402 39321808 -242871856 + HERV3 LTR ERV1 2049 2469 -5957 496 215 67 22 chr1 39321794 39321929 -242871735 + HERV3 LTR ERV1 3684 3824 -4602 * 5443 196 22 6 chr1 39321919 39323004 -242870660 + HERV3 LTR ERV1 5148 6313 -2113 1900 218 29 15 chr1 39323060 39323769 -242869895 + HERV3 LTR ERV1 7012 7811 -2 937 208 66 73 chr1 39323844 39324132 -242869532 + LTR2 LTR ERV1 44 329 -120 26 0 0 0 chr1 39325931 39325957 -242867707 + AT_rich Low_complexity Low_complexity 1 26 0 1026 164 89 14 chr1 39327206 39327420 -242866244 + AluJb SINE Alu 1 230 -82 2008 119 3 0 chr1 39327613 39327908 -242865756 - AluSq SINE Alu -17 296 1 2137 69 7 23 chr1 39327951 39328254 -242865410 - AluY SINE Alu -13 298 1 389 169 0 90 chr1 39329044 39329133 -242864531 + Tigger7 DNA MER2_type 2411 2491 0 329 167 56 56 chr1 39329375 39329447 -242864217 - AluSg/x SINE Alu -14 286 215 818 73 0 9 chr1 39329448 39329558 -242864106 - AluSq/x SINE Alu -203 109 1 1938 100 31 3 chr1 39329837 39330128 -242863536 - AluY SINE Alu -12 299 1 193 241 383 12 chr1 39330347 39330509 -242863155 + MIR SINE MIR 3 224 -38 3353 180 103 35 chr1 39331007 39331575 -242862089 + L1MB7 LINE L1 4477 5005 -1179 1629 171 42 0 chr1 39331575 39331861 -242861803 + AluJo SINE Alu 1 298 -14 3353 180 103 35 chr1 39331861 39331894 -242861770 + L1MB7 LINE L1 5005 5034 -1150 1643 111 87 4 chr1 39331894 39332146 -242861518 + AluSx SINE Alu 16 288 -24 3353 180 103 35 chr1 39332146 39332275 -242861389 + L1MB7 LINE L1 5034 5153 -1031 1819 128 25 0 chr1 39332275 39332549 -242861115 + AluSx SINE Alu 1 281 -31 3353 180 103 35 chr1 39332549 39332765 -242860899 + L1MB7 LINE L1 5153 5353 -831 1250 177 130 16 chr1 39332765 39333019 -242860645 + AluJb SINE Alu 2 284 -28 3353 180 103 35 chr1 39333019 39333355 -242860309 + L1MB7 LINE L1 5353 5665 -519 1933 124 31 0 chr1 39333355 39333645 -242860019 + AluSx SINE Alu 1 299 -13 3353 180 103 35 chr1 39333645 39333768 -242859896 + L1MB7 LINE L1 5665 6184 0 248 211 55 83 chr1 39333774 39333796 -242859868 - L2 LINE L2 -460 2854 2833 2139 105 3 7 chr1 39333796 39334092 -242859572 + AluSx SINE Alu 1 295 -17 248 211 55 83 chr1 39334092 39334178 -242859486 - L2 LINE L2 -481 2833 2749 196 271 129 29 chr1 39334189 39334259 -242859405 + L2 LINE L2 2604 2680 -634 369 180 114 32 chr1 39334269 39334478 -242859186 - MLT1H LTR MaLR -4 545 301 1913 132 10 3 chr1 39335034 39335330 -242858334 - AluJb SINE Alu -14 298 1 2298 97 0 0 chr1 39335331 39335639 -242858025 - AluSx SINE Alu -4 308 1 1668 117 63 10 chr1 39335784 39336084 -242857580 - L1MA8 LINE L1 -12 6279 5964 1184 162 10 0 chr1 39336198 39336395 -242857269 - L1MA8 LINE L1 -367 5924 5726 2058 108 3 0 chr1 39336595 39336882 -242856782 - AluSg SINE Alu -22 288 1 3355 138 0 100 chr1 39337120 39337361 -242856303 - L1MA7 LINE L1 -32 6259 5989 1983 115 0 63 chr1 39337361 39337692 -242855972 + AluSx SINE Alu 1 310 -2 3355 138 0 100 chr1 39337692 39337914 -242855750 - L1MA7 LINE L1 -302 5989 5740 1886 140 3 40 chr1 39337914 39338099 -242855565 - AluSx SINE Alu -2 310 141 2267 70 0 13 chr1 39338099 39338398 -242855266 - AluY SINE Alu -16 295 1 1886 140 3 40 chr1 39338398 39338534 -242855130 - AluSx SINE Alu -171 141 1 1949 137 3 3 chr1 39338538 39338838 -242854826 - AluSx SINE Alu -12 300 1 2281 100 0 3 chr1 39338843 39339154 -242854510 - AluY SINE Alu -1 310 1 3355 138 0 100 chr1 39339154 39339419 -242854245 - L1MA7 LINE L1 -558 5733 5473 1921 109 36 0 chr1 39339419 39339694 -242853970 - AluSc SINE Alu -8 301 17 3355 138 0 100 chr1 39339694 39339811 -242853853 - L1MA7 LINE L1 -818 5473 5343 603 214 0 0 chr1 39339804 39339921 -242853743 + L1 LINE L1 3801 3917 -2229 * 1565 173 10 26 chr1 39339951 39340264 -242853400 - AluSx SINE Alu -4 308 1 46 0 0 0 chr1 39340283 39340329 -242853335 + AT_rich Low_complexity Low_complexity 1 46 0 1029 77 0 53 chr1 39340329 39340499 -242853165 - L1PB2 LINE L1 -3 6148 5988 252 59 0 0 chr1 39340556 39340590 -242853074 + (CA)n Simple_repeat Simple_repeat 1 34 0 402 187 9 84 chr1 39340637 39340744 -242852920 - AluJo SINE Alu -95 217 119 2094 124 0 0 chr1 39340777 39341083 -242852581 - AluSq SINE Alu -7 306 1 51 65 0 0 chr1 39341083 39341176 -242852488 + AT_rich Low_complexity Low_complexity 1 93 0 2113 125 0 0 chr1 39341224 39341529 -242852135 - AluSx SINE Alu -7 305 1 556 312 148 65 chr1 39341541 39342053 -242851611 - L1MEc LINE L1 -5516 880 303 2021 123 10 10 chr1 39342053 39342355 -242851309 + AluSx SINE Alu 1 302 -10 556 312 148 65 chr1 39342355 39342477 -242851187 - L1MEc LINE L1 -6093 303 193 1726 177 30 71 chr1 39342563 39342899 -242850765 + MLT1B LTR MaLR 1 350 -40 2346 75 3 7 chr1 39342899 39343204 -242850460 - AluSq SINE Alu -9 304 1 2248 68 0 0 chr1 39343207 39343522 -242850142 - AluY SINE Alu 0 315 1 1726 177 30 71 chr1 39343522 39343587 -242850077 + MLT1B LTR MaLR 352 390 0 251 301 10 10 chr1 39343589 39343692 -242849972 - L1MEc LINE L1 -6255 141 39 431 189 25 33 chr1 39343794 39343916 -242849748 - L1MA10 LINE L1 -7 6327 6207 644 178 0 8 chr1 39343919 39344037 -242849627 - MER65A LTR ERV1 -20 425 309 1668 142 16 0 chr1 39344037 39344291 -242849373 + AluSx SINE Alu 1 258 -54 1979 136 27 0 chr1 39394503 39394804 -242798860 + AluSx SINE Alu 1 309 -3 2236 89 0 7 chr1 39396484 39396777 -242796887 + AluSq SINE Alu 1 291 -22 562 235 71 18 chr1 39396808 39396978 -242796686 + MER58C DNA MER1_type 32 210 -5 2224 130 0 0 chr1 39397110 39397417 -242796247 - AluSx SINE Alu 0 312 6 2240 170 40 7 chr1 39397556 39398009 -242795655 + L1MB2 LINE L1 5700 6167 -4 1614 172 28 7 chr1 39398044 39398334 -242795330 + AluSq SINE Alu 1 296 -17 329 216 57 0 chr1 39398355 39398443 -242795221 + L1ME LINE L1 3270 3362 -2784 234 200 33 17 chr1 39398533 39398593 -242795071 - MER3 DNA MER1_type -1 208 148 * 269 108 0 0 chr1 39398592 39398629 -242795035 - U2 snRNA snRNA -151 37 1 440 198 83 25 chr1 39398629 39398750 -242794914 - MER3 DNA MER1_type -60 149 22 1536 254 52 31 chr1 39398764 39399437 -242794227 + L1ME LINE L1 3394 4136 -2010 1958 132 0 0 chr1 39399437 39399710 -242793954 + AluSx SINE Alu 1 273 -39 1217 201 77 98 chr1 39399821 39400264 -242793400 + L1ME LINE L1 4738 5189 -973 204 97 0 0 chr1 39400264 39400295 -242793369 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 1217 201 77 98 chr1 39400295 39400428 -242793236 + L1ME LINE L1 5189 5323 -839 1634 152 0 40 chr1 39400428 39400726 -242792938 + AluJb SINE Alu 16 302 0 1217 201 77 98 chr1 39400726 39400922 -242792742 + L1ME LINE L1 5323 5483 -679 1423 160 25 25 chr1 39400957 39401232 -242792432 + AluJo SINE Alu 24 298 -14 526 251 18 27 chr1 39401232 39401451 -242792213 + L1M4 LINE L1 3390 3606 -2540 23 0 0 0 chr1 39401870 39401893 -242791771 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr1 39402245 39402270 -242791394 + (CA)n Simple_repeat Simple_repeat 2 26 0 2078 285 112 48 chr1 39402319 39403433 -242790231 + L2 LINE L2 1752 2936 -378 1799 172 19 13 chr1 39403712 39404020 -242789644 + AluJb SINE Alu 1 310 -2 700 258 152 40 chr1 39404075 39404289 -242789375 - L1MC4a LINE L1 -1926 5882 5619 2406 93 0 3 chr1 39404289 39404602 -242789062 + AluSx SINE Alu 1 312 0 700 258 152 40 chr1 39404602 39404709 -242788955 - L1MC4a LINE L1 -2189 5619 5525 476 145 0 13 chr1 39404712 39404788 -242788876 - MER58A DNA MER1_type 0 224 150 2220 77 6 49 chr1 39404866 39405191 -242788473 - AluY SINE Alu 0 311 1 1603 174 67 0 chr1 39405790 39406060 -242787604 + AluSx SINE Alu 1 288 -24 302 279 54 48 chr1 39406278 39406425 -242787239 - L1MC4 LINE L1 -803 7239 7092 418 342 0 9 chr1 39406493 39406607 -242787057 + L2 LINE L2 3160 3272 0 193 324 14 14 chr1 39406618 39406689 -242786975 - L2 LINE L2 -557 2757 2687 1681 158 10 48 chr1 39406741 39407032 -242786632 - AluJo SINE Alu -30 282 3 231 227 187 0 chr1 39407057 39407132 -242786532 - MLT1K LTR MaLR 0 588 500 192 323 48 0 chr1 39408220 39408282 -242785382 + MIR3 SINE MIR 8 72 -136 254 323 126 36 chr1 39408299 39408522 -242785142 - MIR SINE MIR 0 262 20 36 23 0 0 chr1 39409671 39409714 -242783950 + AT_rich Low_complexity Low_complexity 1 43 0 228 387 99 7 chr1 39410078 39410220 -242783444 + L2 LINE L2 3102 3256 -16 28 0 0 0 chr1 39410779 39410807 -242782857 + AT_rich Low_complexity Low_complexity 1 28 0 1597 157 42 54 chr1 39412535 39412733 -242780931 - AluJb SINE Alu -1 311 117 1809 139 7 4 chr1 39412733 39413007 -242780657 + AluSx SINE Alu 1 275 -37 1597 157 42 54 chr1 39413007 39413121 -242780543 - AluJb SINE Alu -195 117 3 865 175 19 25 chr1 39413153 39413313 -242780351 - MER20 DNA MER1_type 0 219 61 230 354 37 43 chr1 39414903 39415067 -242778597 - MIR SINE MIR -42 220 58 216 0 0 0 chr1 39415080 39415104 -242778560 + (T)n Simple_repeat Simple_repeat 1 24 0 2052 122 0 39 chr1 39416570 39416882 -242776782 + AluSq SINE Alu 1 300 -13 2083 110 0 36 chr1 39417061 39417369 -242776295 - AluSp SINE Alu -16 297 1 2020 111 39 0 chr1 39417539 39417818 -242775846 + AluSx SINE Alu 5 294 -18 1043 163 8 119 chr1 39417862 39418114 -242775550 + MER58A DNA MER1_type 1 224 0 440 275 59 45 chr1 39418408 39418630 -242775034 + L1ME4a LINE L1 5523 5747 -374 1143 152 33 5 chr1 39418667 39418877 -242774787 - MER96B DNA MER1_type? -201 216 1 424 254 139 24 chr1 39419281 39419568 -242774096 + L1ME4a LINE L1 5791 6110 -11 31 58 0 0 chr1 39419578 39419630 -242774034 + AT_rich Low_complexity Low_complexity 1 52 0 207 196 0 0 chr1 39419815 39419861 -242773803 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 279 93 0 0 chr1 39420165 39420208 -242773456 + (T)n Simple_repeat Simple_repeat 1 43 0 216 0 0 0 chr1 39420568 39420592 -242773072 + (T)n Simple_repeat Simple_repeat 1 24 0 405 0 0 0 chr1 39420905 39420950 -242772714 + (TG)n Simple_repeat Simple_repeat 1 45 0 2246 75 0 3 chr1 39420955 39421258 -242772406 - AluY SINE Alu 0 302 1 497 319 57 27 chr1 39421828 39422163 -242771501 - MARNA DNA Mariner -156 430 86 780 162 108 3 chr1 39422214 39422442 -242771222 + L1MA8 LINE L1 5989 6223 -68 1281 145 39 30 chr1 39422463 39422697 -242770967 - MER46A DNA MER2_type 0 236 1 1993 149 0 3 chr1 39422718 39423019 -242770645 + AluSx SINE Alu 1 300 -12 234 105 0 0 chr1 39423059 39423097 -242770567 + (TA)n Simple_repeat Simple_repeat 1 38 0 2089 86 0 64 chr1 39423264 39423590 -242770074 - AluY SINE Alu -6 305 1 1078 113 0 0 chr1 39423592 39423734 -242769930 - AluY SINE Alu -169 142 1 2516 73 0 10 chr1 39423917 39424230 -242769434 - AluSp SINE Alu -2 311 2 726 155 0 9 chr1 39424416 39424532 -242769132 + FLAM_A SINE Alu 1 115 -18 1768 195 0 0 chr1 39425690 39425988 -242767676 + AluJo SINE Alu 1 298 -14 2309 84 0 14 chr1 39426426 39426722 -242766942 - AluSc SINE Alu -17 292 1 2320 90 0 0 chr1 39426815 39427103 -242766561 - AluSx SINE Alu -24 288 1 11290 132 89 73 chr1 39427375 39428989 -242764675 - Tigger1 DNA MER2_type -1 2417 830 2103 122 0 3 chr1 39428989 39429293 -242764371 - AluSc SINE Alu -6 303 1 932 102 0 7 chr1 39429293 39429430 -242764234 - AluSq/x SINE Alu -176 136 1 11290 132 89 73 chr1 39429430 39430035 -242763629 - Tigger1 DNA MER2_type -1587 831 24 2221 82 4 0 chr1 39430193 39430517 -242763147 - AluY SINE Alu 0 325 1 344 225 78 8 chr1 39430777 39430906 -242762758 - L1ME4a LINE L1 -15 6106 5969 237 292 56 0 chr1 39430915 39430987 -242762677 - MIR SINE MIR -76 186 111 2299 110 0 10 chr1 39431754 39432063 -242761601 + AluSx SINE Alu 1 306 -6 990 209 67 0 chr1 39432097 39432307 -242761357 + MER58A DNA MER1_type 1 224 0 683 182 92 152 chr1 39432308 39432406 -242761258 + LTR37B LTR ERV1 114 216 -252 589 35 12 12 chr1 39432406 39432491 -242761173 + (TA)n Simple_repeat Simple_repeat 2 86 0 683 182 92 152 chr1 39432491 39432531 -242761133 + LTR37B LTR ERV1 216 257 -211 1663 201 7 7 chr1 39432531 39432835 -242760829 + AluJo SINE Alu 1 304 -8 683 182 92 152 chr1 39432835 39433064 -242760600 + LTR37B LTR ERV1 257 460 -8 388 293 94 33 chr1 39433115 39433296 -242760368 - L3 LINE CR1 -3 1574 1383 185 321 54 0 chr1 39433505 39433561 -242760103 - L2 LINE L2 -10 3262 3204 5548 179 16 37 chr1 39433584 39434227 -242759437 + L1P LINE L1 2154 2760 -3386 2262 113 3 0 chr1 39434227 39434528 -242759136 + AluSq SINE Alu 1 302 -11 5548 179 16 37 chr1 39434528 39435156 -242758508 + L1P LINE L1 2760 3399 -2747 608 257 129 7 chr1 39435420 39435537 -242758127 + MER58B DNA MER1_type 27 128 -2292 1933 132 7 20 chr1 39435537 39435841 -242757823 + AluJb SINE Alu 1 300 -12 608 257 129 7 chr1 39435841 39436003 -242757661 + MER58B DNA MER1_type 128 340 -1 279 239 109 33 chr1 39436703 39436795 -242756869 - MER5B DNA MER1_type -78 100 2 303 28 0 0 chr1 39437631 39437667 -242755997 + (CA)n Simple_repeat Simple_repeat 2 37 0 420 158 0 0 chr1 39437668 39437744 -242755920 + (TA)n Simple_repeat Simple_repeat 1 76 0 2007 102 27 20 chr1 39437909 39438202 -242755462 - AluSx SINE Alu -17 295 1 336 21 0 0 chr1 39438698 39438745 -242754919 - L1MA3 LINE L1 0 6305 6259 24 0 0 0 chr1 39438750 39438774 -242754890 + AT_rich Low_complexity Low_complexity 1 24 0 324 339 21 24 chr1 39439229 39439461 -242754203 + MIR SINE MIR 12 243 -19 520 259 14 97 chr1 39440204 39440283 -242753381 - MER112 DNA MER1_type -5 255 171 1981 121 9 19 chr1 39440283 39440598 -242753066 - AluSx SINE Alu 0 312 1 520 259 14 97 chr1 39440598 39440796 -242752868 - MER112 DNA MER1_type -89 171 1 1911 133 149 8 chr1 39441690 39442065 -242751599 - MSTA LTR MaLR 0 428 1 323 289 62 0 chr1 39442314 39442411 -242751253 + L2 LINE L2 3199 3301 -12 364 165 68 29 chr1 39443568 39443650 -242750014 + MER112 DNA MER1_type 5 93 -167 2352 104 0 0 chr1 39443650 39443959 -242749705 - AluSx SINE Alu -3 309 1 364 165 68 29 chr1 39443959 39443979 -242749685 + MER112 DNA MER1_type 93 111 -149 196 30 61 0 chr1 39444032 39444065 -242749599 + A-rich Low_complexity Low_complexity 3 37 0 832 112 15 22 chr1 39444156 39444290 -242749374 - FLAM_C SINE Alu 0 133 1 27 62 0 0 chr1 39444756 39444804 -242748860 + AT_rich Low_complexity Low_complexity 1 48 0 2485 64 0 3 chr1 39444927 39445224 -242748440 + AluY SINE Alu 1 296 -15 243 0 0 0 chr1 39445236 39445263 -242748401 + (TG)n Simple_repeat Simple_repeat 2 28 0 2511 79 127 5 chr1 39445726 39446119 -242747545 - LTR7 LTR ERV1 -9 441 1 608 259 0 18 chr1 39446340 39446510 -242747154 + FRAM SINE Alu 1 167 -9 1656 139 170 16 chr1 39446515 39446838 -242746826 - MER83B LTR ERV1 0 378 6 2299 100 3 3 chr1 39447219 39447520 -242746144 + AluSg SINE Alu 5 305 -5 21 36 0 0 chr1 39448971 39448999 -242744665 + AT_rich Low_complexity Low_complexity 1 28 0 227 359 0 0 chr1 39449259 39449351 -242744313 - MIR SINE MIR -17 245 154 3344 195 95 54 chr1 39449509 39450274 -242743390 - L1M4b LINE L1 -6052 807 11 871 112 16 8 chr1 39450285 39450410 -242743254 + FLAM_C SINE Alu 1 126 -17 350 239 0 0 chr1 39450551 39450622 -242743042 - MER5A DNA MER1_type -104 85 15 808 161 0 8 chr1 39450768 39450898 -242742766 + FLAM_C SINE Alu 1 129 -4 1407 172 192 13 chr1 39451038 39451346 -242742318 - MER47A DNA MER2_type -3 363 1 526 293 67 29 chr1 39453427 39453666 -242739998 - MIR SINE MIR 0 262 15 1866 92 4 8 chr1 39455348 39455652 -242738012 + AluY SINE Alu 33 335 0 3920 146 34 9 chr1 39455659 39455819 -242737845 + L1MB5 LINE L1 5172 5327 -847 1412 140 184 82 chr1 39455819 39456148 -242737516 + MSTB1 LTR MaLR 1 378 -54 2482 81 0 0 chr1 39456148 39456445 -242737219 - AluSg SINE Alu -13 297 1 1412 140 184 82 chr1 39456445 39456507 -242737157 + MSTB1 LTR MaLR 378 432 0 3920 146 34 9 chr1 39456507 39457162 -242736502 + L1MB5 LINE L1 5327 5996 -178 288 0 0 0 chr1 39457330 39457362 -242736302 + (TG)n Simple_repeat Simple_repeat 2 33 0 313 252 197 37 chr1 39457611 39457829 -242735835 - L1M4 LINE L1 -2922 3224 2972 1621 247 170 9 chr1 39458171 39458713 -242734951 - L1MC4 LINE L1 -953 7089 6461 2185 110 0 10 chr1 39459127 39459427 -242734237 - AluSg SINE Alu -13 297 1 619 53 0 0 chr1 39459435 39459510 -242734154 - HY5 scRNA scRNA -8 76 2 1903 139 0 23 chr1 39459853 39460154 -242733510 - AluJo SINE Alu -18 294 1 265 261 144 31 chr1 39460272 39460529 -242733135 - HAL1 LINE L1 -1022 1485 1200 2338 93 0 7 chr1 39460691 39460993 -242732671 + AluSx SINE Alu 1 300 -12 2713 26 3 0 chr1 39461563 39461865 -242731799 - AluY SINE Alu -8 303 1 2044 96 30 0 chr1 39463435 39463705 -242729959 + AluSx SINE Alu 21 298 -14 493 133 26 53 chr1 39464295 39464408 -242729256 + MER5A DNA MER1_type 1 110 -79 196 196 245 20 chr1 39464454 39464556 -242729108 + MIR SINE MIR 17 141 -67 2400 78 7 13 chr1 39465697 39466004 -242727660 - AluSg SINE Alu -5 305 1 212 159 0 48 chr1 39468257 39468320 -242725344 + A-rich Low_complexity Low_complexity 2 61 0 234 336 84 0 chr1 39469591 39469722 -242723942 + L2 LINE L2 2566 2707 -607 216 340 70 19 chr1 39469845 39470060 -242723604 + L2 LINE L2 2339 2564 -750 1049 121 67 6 chr1 39470133 39470298 -242723366 - AluSq SINE Alu -4 309 135 1833 164 0 3 chr1 39470327 39470457 -242723207 + AluJb SINE Alu 1 130 -182 180 0 0 0 chr1 39470457 39470477 -242723187 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1833 164 0 3 chr1 39470477 39470632 -242723032 + AluJb SINE Alu 130 285 -27 374 293 251 14 chr1 39470796 39471083 -242722581 + L2 LINE L2 2886 3240 -32 965 159 0 7 chr1 39471266 39471411 -242722253 + FRAM SINE Alu 1 144 -32 313 261 57 0 chr1 39473170 39473258 -242720406 + MIR SINE MIR 54 146 -116 22 56 0 0 chr1 39473320 39473356 -242720308 + AT_rich Low_complexity Low_complexity 1 36 0 2148 123 0 3 chr1 39475007 39475325 -242718339 + AluSx SINE Alu 1 317 0 1420 171 72 31 chr1 39475325 39475617 -242718047 - Charlie4a DNA MER1_type -202 306 3 747 226 64 43 chr1 39475973 39476208 -242717456 - MIR SINE MIR -3 259 20 242 372 21 11 chr1 39476985 39477176 -242716488 + L2 LINE L2 2174 2366 -948 509 275 161 0 chr1 39477176 39477387 -242716277 - MIR SINE MIR -17 245 1 544 295 18 12 chr1 39477675 39477841 -242715823 + MER5B DNA MER1_type 12 178 0 301 339 180 25 chr1 39478044 39478859 -242714805 + L2 LINE L2 1764 2705 -609 1441 153 9 0 chr1 39479182 39479404 -242714260 - AluJo SINE Alu -3 309 86 277 161 92 35 chr1 39481195 39481282 -242712382 + MIR SINE MIR 58 149 -59 251 229 33 66 chr1 39481802 39481863 -242711801 + MIR SINE MIR 65 124 -84 252 342 0 0 chr1 39482979 39483058 -242710606 + G-rich Low_complexity Low_complexity 3 81 0 306 0 0 0 chr1 39484441 39484475 -242709189 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 402 51 153 0 chr1 39485645 39485704 -242707960 - MADE1 DNA Mariner 0 80 13 697 295 181 0 chr1 39486742 39486996 -242706668 + MER102b DNA MER1_type 11 310 -31 186 309 283 13 chr1 39487002 39487154 -242706510 - L3 LINE CR1 -105 1472 1280 2612 66 0 0 chr1 39487189 39487494 -242706170 - AluSg SINE Alu -5 305 1 592 208 163 55 chr1 39488010 39488145 -242705519 - MIR SINE MIR -6 256 137 2166 119 3 0 chr1 39488145 39488440 -242705224 + AluSx SINE Alu 1 296 -16 915 112 0 0 chr1 39488440 39488583 -242705081 + (GGAA)n Simple_repeat Simple_repeat 3 145 0 592 208 163 55 chr1 39488583 39488648 -242705016 - MIR SINE MIR -124 138 33 341 317 165 0 chr1 39488683 39488847 -242704817 - MIR SINE MIR -44 218 28 246 105 0 0 chr1 39489108 39489146 -242704518 + (A)n Simple_repeat Simple_repeat 1 38 0 2516 62 0 3 chr1 39489543 39489848 -242703816 - AluY SINE Alu -7 304 1 4915 207 79 63 chr1 39489969 39491679 -242701985 - L1ME1 LINE L1 -14 6152 4471 1901 171 0 10 chr1 39491679 39491977 -242701687 + AluJb SINE Alu 3 297 -15 4915 207 79 63 chr1 39491977 39492625 -242701039 - L1ME1 LINE L1 -1695 4471 3731 2195 128 0 0 chr1 39492625 39492929 -242700735 - AluSx SINE Alu -8 304 1 4915 207 79 63 chr1 39492929 39493302 -242700362 - L1ME1 LINE L1 -2435 3731 3365 476 121 0 0 chr1 39493310 39493376 -242700288 - AluJ/FLAM SINE Alu -245 67 2 856 232 138 24 chr1 39493382 39493406 -242700258 - L1ME1 LINE L1 -3033 3113 3093 1761 178 13 3 chr1 39493406 39493704 -242699960 - AluJo SINE Alu -11 301 1 856 232 138 24 chr1 39493704 39494049 -242699615 - L1ME1 LINE L1 -3053 3093 2702 217 244 0 0 chr1 39494191 39494232 -242699432 + MIR3 SINE MIR 147 187 -21 29 47 0 0 chr1 39494864 39494907 -242698757 + AT_rich Low_complexity Low_complexity 1 43 0 985 169 6 12 chr1 39495715 39495887 -242697777 + FRAM SINE Alu 1 171 -5 239 320 100 20 chr1 39495983 39496083 -242697581 - L2 LINE L2 0 3272 3165 345 243 54 61 chr1 39496449 39496493 -242697171 + MER103 DNA DNA 2 45 -121 2272 108 19 0 chr1 39496493 39496800 -242696864 + AluSp SINE Alu 1 313 0 345 243 54 61 chr1 39496800 39496903 -242696761 + MER103 DNA DNA 45 148 -18 204 328 151 8 chr1 39497177 39497296 -242696368 + L2 LINE L2 3137 3272 0 454 287 80 69 chr1 39497495 39497797 -242695867 + L1ME4a LINE L1 5581 5889 -232 1626 176 42 3 chr1 39497797 39498086 -242695578 + AluJo SINE Alu 1 300 -12 454 287 80 69 chr1 39498086 39498145 -242695519 + L1ME4a LINE L1 5889 5946 -175 * 4631 188 34 49 chr1 39498123 39498939 -242694725 - L1MB5 LINE L1 -13 6161 5334 1546 140 184 82 chr1 39498939 39499001 -242694663 - MSTB1 LTR MaLR 0 432 378 2459 81 0 0 chr1 39499001 39499298 -242694366 + AluSg SINE Alu 1 297 -13 1546 140 184 82 chr1 39499298 39499627 -242694037 - MSTB1 LTR MaLR -54 378 1 4631 188 34 49 chr1 39499627 39499794 -242693870 - L1MB5 LINE L1 -840 5334 5166 1971 102 3 11 chr1 39499794 39500131 -242693533 - AluY SINE Alu 0 335 1 4631 188 34 49 chr1 39500131 39500558 -242693106 - L1MB5 LINE L1 -1008 5166 4734 2021 50 0 8 chr1 39500558 39500796 -242692868 - AluY SINE Alu -75 236 1 4631 188 34 49 chr1 39500796 39501219 -242692445 - L1MB5 LINE L1 -1440 4734 4376 2084 58 43 33 chr1 39501219 39501519 -242692145 - AluY SINE Alu 0 304 2 4631 188 34 49 chr1 39501519 39501862 -242691802 - L1MB5 LINE L1 -1798 4376 4029 1558 185 4 11 chr1 39502402 39502662 -242691002 - AluJo SINE Alu -30 282 25 1015 253 93 3 chr1 39503950 39504099 -242689565 + MER58B DNA MER1_type 1 135 -2285 2013 125 3 20 chr1 39504099 39504404 -242689260 + AluJb SINE Alu 1 300 -12 1015 253 93 3 chr1 39504404 39504566 -242689098 + MER58B DNA MER1_type 135 340 -1 267 239 109 33 chr1 39505266 39505358 -242688306 - MER5B DNA MER1_type -78 100 2 21 0 0 0 chr1 39505643 39505664 -242688000 + AT_rich Low_complexity Low_complexity 1 21 0 2263 102 0 0 chr1 39505894 39506200 -242687464 - AluSx SINE Alu 0 306 1 1048 184 0 12 chr1 39506427 39506595 -242687069 + FRAM SINE Alu 1 166 0 812 172 0 62 chr1 39506903 39507048 -242686616 + FRAM SINE Alu 11 146 -30 2185 92 14 7 chr1 39507064 39507358 -242686306 + AluSq SINE Alu 1 296 -17 315 269 144 19 chr1 39507552 39507656 -242686008 + L2 LINE L2 3194 3310 -3 414 52 0 143 chr1 39508652 39508729 -242684935 + MADE1 DNA Mariner 1 66 -14 436 241 58 92 chr1 39511970 39512077 -242681587 + MIR SINE MIR 8 109 -153 2393 54 4 0 chr1 39512077 39512388 -242681276 + AluY SINE Alu 1 312 0 436 241 58 92 chr1 39512388 39512453 -242681211 + MIR SINE MIR 109 175 -87 184 143 0 95 chr1 39512451 39512493 -242681171 + L2 LINE L2 3264 3301 -12 * 2076 129 7 7 chr1 39512736 39513038 -242680626 + AluSx SINE Alu 1 302 -10 34 24 0 0 chr1 39513252 39513293 -242680371 + AT_rich Low_complexity Low_complexity 1 41 0 189 158 0 0 chr1 39514196 39514234 -242679430 - L2 LINE L2 0 3313 3276 2010 149 10 0 chr1 39514319 39514615 -242679049 + AluJb SINE Alu 1 299 -13 23 0 0 0 chr1 39514730 39514753 -242678911 + AT_rich Low_complexity Low_complexity 1 23 0 388 327 136 16 chr1 39514757 39515185 -242678479 - L2 LINE L2 -225 3047 2565 2123 121 0 13 chr1 39515204 39515502 -242678162 + AluSx SINE Alu 1 294 -18 2999 218 75 29 chr1 39515511 39516311 -242677353 - L1ME1 LINE L1 -9 6157 5321 730 195 31 0 chr1 39516315 39516474 -242677190 - L1MA10 LINE L1 -2 6332 6169 2358 71 3 10 chr1 39516519 39516830 -242676834 - AluY SINE Alu -2 309 1 1999 125 14 7 chr1 39516830 39517124 -242676540 - AluSx SINE Alu -15 297 1 414 276 60 0 chr1 39517129 39517263 -242676401 - L1MC/D LINE L1 -2032 5776 5635 226 260 20 0 chr1 39517392 39517442 -242676222 + L2 LINE L2 3263 3313 0 1407 182 4 32 chr1 39517530 39517783 -242675881 + AluJo SINE Alu 49 294 -18 2438 94 10 0 chr1 39517785 39518092 -242675572 + AluSg SINE Alu 1 310 0 186 338 0 0 chr1 39518286 39518363 -242675301 - L2 LINE L2 -2234 1080 1004 22 35 0 0 chr1 39518854 39518883 -242674781 + AT_rich Low_complexity Low_complexity 1 29 0 438 77 333 0 chr1 39519186 39519264 -242674400 - AluSc SINE Alu -11 298 195 3514 208 36 67 chr1 39519583 39519890 -242673774 + L1M4 LINE L1 4071 4386 -1760 2031 62 47 33 chr1 39519890 39520189 -242673475 + AluY SINE Alu 2 304 0 3514 208 36 67 chr1 39520189 39520609 -242673055 + L1M4 LINE L1 4386 4756 -1390 2021 50 0 8 chr1 39520609 39520847 -242672817 + AluY SINE Alu 1 236 -75 3514 208 36 67 chr1 39520847 39521211 -242672453 + L1M4 LINE L1 4756 5130 -1016 200 118 29 0 chr1 39521212 39521246 -242672418 + A-rich Low_complexity Low_complexity 5 39 0 2127 92 0 10 chr1 39521274 39521591 -242672073 + AluY SINE Alu 1 314 0 2092 103 10 30 chr1 39521759 39522059 -242671605 - AluSg SINE Alu -16 294 1 3035 230 38 28 chr1 39522059 39522368 -242671296 - L1ME1 LINE L1 -204 6460 6156 2487 70 3 0 chr1 39522368 39522666 -242670998 - AluSp SINE Alu -14 299 1 3035 230 38 28 chr1 39522666 39523645 -242670019 - L1ME1 LINE L1 -508 6156 5164 1655 183 71 53 chr1 39523663 39524082 -242669582 - MLT1C LTR MaLR 0 467 31 1483 206 40 30 chr1 39524103 39524232 -242669432 - L1ME1 LINE L1 -1644 5000 4874 765 191 24 8 chr1 39524232 39524358 -242669306 + FLAM_A SINE Alu 1 128 -5 1483 206 40 30 chr1 39524358 39524631 -242669033 - L1ME1 LINE L1 -1770 4874 4594 234 0 0 0 chr1 39524705 39524731 -242668933 + (TA)n Simple_repeat Simple_repeat 2 27 0 1792 15 0 0 chr1 39524739 39524940 -242668724 - L1HS LINE L1 0 6155 5955 653 272 96 33 chr1 39524936 39525208 -242668456 - L1ME1 LINE L1 -5342 1204 916 * 284 278 80 46 chr1 39525289 39525440 -242668224 - L1ME1 LINE L1 -5671 871 716 249 323 97 16 chr1 39525426 39525550 -242668114 - L1ME LINE L1 -5605 465 332 * 692 153 15 58 chr1 39525738 39525875 -242667789 - FLAM_A SINE Alu -2 131 1 1646 143 77 14 chr1 39526048 39526335 -242667329 + AluJb SINE Alu 5 309 -3 836 261 64 45 chr1 39526478 39526552 -242667112 - L1ME LINE L1 -5219 851 780 1526 178 19 54 chr1 39526552 39526867 -242666797 + AluJo SINE Alu 1 304 -8 836 261 64 45 chr1 39526867 39527198 -242666466 - L1ME LINE L1 -5290 780 431 1939 125 38 10 chr1 39527198 39527486 -242666178 - AluSx SINE Alu -16 296 1 836 261 64 45 chr1 39527486 39527653 -242666011 - L1ME LINE L1 -5639 431 269 630 310 63 49 chr1 39527795 39528240 -242665424 - L1ME LINE L1 -5610 460 10 515 319 114 34 chr1 39528250 39528947 -242664717 - L2 LINE L2 -774 2540 1715 1164 271 124 15 chr1 39529169 39529579 -242664085 + L1MC4a LINE L1 22 476 -5920 2246 115 3 10 chr1 39529592 39529906 -242663758 - AluSx SINE Alu 0 312 1 999 143 200 0 chr1 39529906 39530081 -242663583 - AluJb SINE Alu -17 295 86 2836 250 76 28 chr1 39530096 39530660 -242663004 + L1MC4a LINE L1 489 1024 -5372 2380 119 143 11 chr1 39530660 39531038 -242662626 + MSTA LTR MaLR 1 428 0 2836 250 76 28 chr1 39531038 39531554 -242662110 + L1MC4a LINE L1 1024 1621 -4775 2987 188 77 136 chr1 39531571 39532174 -242661490 + L1MC4a LINE L1 3198 3835 -2380 2258 102 0 0 chr1 39532174 39532492 -242661172 + AluSg SINE Alu 1 318 0 2987 188 77 136 chr1 39532492 39532818 -242660846 + L1MC4a LINE L1 3835 4162 -2053 761 200 0 0 chr1 39532818 39532948 -242660716 + FLAM_C SINE Alu 2 131 -12 2987 188 77 136 chr1 39532948 39533252 -242660412 + L1MC4a LINE L1 4162 4482 -1733 1521 159 33 0 chr1 39533534 39533779 -242659885 + AluJb SINE Alu 25 277 -35 216 0 0 0 chr1 39533782 39533806 -242659858 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2308 69 35 3 chr1 39533968 39534258 -242659406 + AluY SINE Alu 1 299 -12 1330 266 91 59 chr1 39535331 39535828 -242657836 + L1MC4a LINE L1 5421 5944 -1933 2344 97 3 0 chr1 39535828 39536126 -242657538 + AluSp SINE Alu 1 299 -14 1330 266 91 59 chr1 39536126 39536268 -242657396 + L1MC4a LINE L1 5944 6080 -1797 240 59 0 0 chr1 39536617 39536651 -242657013 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2318 118 6 59 chr1 39537454 39537810 -242655854 - MER1B DNA MER1_type 0 337 1 2496 128 11 19 chr1 39538380 39538747 -242654917 + THE1B LTR MaLR 1 364 0 12562 90 6 2 chr1 39538747 39540321 -242653343 + THE1B-int LTR MaLR 1 1580 0 2531 99 29 56 chr1 39540321 39540695 -242652969 + THE1B LTR MaLR 1 364 0 1517 151 13 0 chr1 39541476 39541708 -242651956 + AluJb SINE Alu 21 255 -57 23 54 0 0 chr1 39541974 39542011 -242651653 + AT_rich Low_complexity Low_complexity 1 37 0 384 271 85 34 chr1 39542115 39542233 -242651431 - L2 LINE L2 -2 3270 3147 2144 122 3 3 chr1 39542336 39542632 -242651032 - AluSx SINE Alu -16 296 1 361 257 30 21 chr1 39542651 39542822 -242650842 - L1ME LINE L1 -303 5818 5646 1131 300 111 24 chr1 39542839 39543433 -242650231 + L2 LINE L2 1948 2593 -721 590 322 64 13 chr1 39543438 39543671 -242649993 + MIR SINE MIR 6 250 -12 1489 152 0 0 chr1 39543672 39543889 -242649775 - AluJb SINE Alu -12 300 84 425 354 148 18 chr1 39543922 39544487 -242649177 + L2 LINE L2 2586 3270 -2 1596 193 3 17 chr1 39544520 39544816 -242648848 - AluJo SINE Alu -20 292 1 2184 151 0 0 chr1 39544854 39545165 -242648499 + AluJb SINE Alu 1 311 -1 2106 119 7 11 chr1 39546953 39547238 -242646426 - AluSx SINE Alu -28 284 1 2182 95 27 7 chr1 39547430 39547724 -242645940 - AluSx SINE Alu -12 300 1 2353 115 0 6 chr1 39547727 39548041 -242645623 - AluSx SINE Alu 0 312 1 714 318 60 0 chr1 39548843 39549076 -242644588 + MIR SINE MIR 1 247 -15 221 273 103 39 chr1 39549092 39549194 -242644470 - MIR SINE MIR -65 143 54 744 183 0 23 chr1 39549288 39549419 -242644245 + FLAM_A SINE Alu 1 128 -5 266 295 133 50 chr1 39549588 39549890 -242643774 + L2 LINE L2 1734 2060 -1254 1176 141 0 0 chr1 39550121 39550284 -242643380 - FRAM SINE Alu -14 162 1 225 327 118 45 chr1 39550478 39550698 -242642966 + L2 LINE L2 2831 3066 -206 759 195 49 24 chr1 39550798 39550962 -242642702 - MER20 DNA MER1_type 0 219 52 7089 93 6 23 chr1 39551643 39552029 -242641635 + L1MA2 LINE L1 5062 5453 -851 2636 46 0 0 chr1 39552029 39552332 -242641332 + AluY SINE Alu 1 303 -8 7089 93 6 23 chr1 39552332 39553211 -242640453 + L1MA2 LINE L1 5453 6304 0 29 0 0 0 chr1 39553212 39553241 -242640423 + AT_rich Low_complexity Low_complexity 1 29 0 192 158 0 0 chr1 39554144 39554182 -242639482 - L2 LINE L2 0 3313 3276 2007 152 10 0 chr1 39554267 39554563 -242639101 + AluJb SINE Alu 1 299 -13 225 0 0 0 chr1 39554591 39554616 -242639048 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr1 39554676 39554699 -242638965 + AT_rich Low_complexity Low_complexity 1 23 0 413 318 157 19 chr1 39554703 39555124 -242638540 - L2 LINE L2 -225 3047 2565 2132 121 0 13 chr1 39555143 39555441 -242638223 + AluSx SINE Alu 1 294 -18 2672 220 77 16 chr1 39555450 39556218 -242637446 - L1ME1 LINE L1 -9 6157 5343 2707 231 39 28 chr1 39556264 39556458 -242637206 - L1ME1 LINE L1 -5 6659 6469 2697 45 0 0 chr1 39556458 39556767 -242636897 - AluY SINE Alu -2 309 1 2707 231 39 28 chr1 39556767 39557074 -242636590 - L1ME1 LINE L1 -195 6469 6167 2479 70 3 0 chr1 39557074 39557372 -242636292 - AluSp SINE Alu -14 299 1 2707 231 39 28 chr1 39557372 39558351 -242635313 - L1ME1 LINE L1 -497 6167 5164 1485 182 71 54 chr1 39558369 39558788 -242634876 - MLT1C LTR MaLR 0 467 31 1315 208 38 35 chr1 39558817 39558938 -242634726 - L1ME1 LINE L1 -1655 4989 4870 717 191 24 8 chr1 39558938 39559064 -242634600 + FLAM_A SINE Alu 1 128 -5 1315 208 38 35 chr1 39559064 39559337 -242634327 - L1ME1 LINE L1 -1774 4870 4594 360 0 0 0 chr1 39559411 39559451 -242634213 + (TA)n Simple_repeat Simple_repeat 2 41 0 1659 0 0 0 chr1 39559451 39559644 -242634020 - L1HS LINE L1 -3 6152 5960 608 255 21 27 chr1 39559645 39559833 -242633831 - L1ME1 LINE L1 -5342 1204 1018 356 314 76 50 chr1 39559870 39560334 -242633330 - L1ME1 LINE L1 -5539 1095 716 641 153 15 58 chr1 39560447 39560584 -242633080 - FLAM_A SINE Alu -2 131 1 1670 146 76 14 chr1 39560757 39561045 -242632619 + AluJb SINE Alu 5 310 -2 744 259 53 45 chr1 39561188 39561262 -242632402 - L1ME LINE L1 -5219 851 779 1589 182 19 32 chr1 39561262 39561570 -242632094 + AluJo SINE Alu 1 304 -8 744 259 53 45 chr1 39561570 39561901 -242631763 - L1ME LINE L1 -5291 779 445 1948 125 38 10 chr1 39561901 39562189 -242631475 - AluSx SINE Alu -16 296 1 744 259 53 45 chr1 39562189 39562316 -242631348 - L1ME LINE L1 -5625 445 320 497 312 63 49 chr1 39562498 39562943 -242630721 - L1ME LINE L1 -5610 460 10 540 316 113 32 chr1 39562953 39563650 -242630014 - L2 LINE L2 -774 2540 1715 1028 281 122 12 chr1 39563872 39564282 -242629382 + L1ME1 LINE L1 22 476 -5920 2254 115 3 10 chr1 39564295 39564609 -242629055 - AluSx SINE Alu 0 312 1 1003 143 200 0 chr1 39564609 39564784 -242628880 - AluJb SINE Alu -17 295 86 2456 250 76 28 chr1 39564799 39565363 -242628301 + L1ME1 LINE L1 489 1024 -5372 2197 119 143 11 chr1 39565363 39565741 -242627923 + MSTA LTR MaLR 1 428 0 2456 250 76 28 chr1 39565741 39566257 -242627407 + L1ME1 LINE L1 1024 1621 -4775 3135 172 67 199 chr1 39566277 39566877 -242626787 + L1ME1 LINE L1 3201 3879 -2336 2269 99 0 0 chr1 39566877 39567195 -242626469 + AluSg SINE Alu 1 318 0 3135 172 67 199 chr1 39567195 39567520 -242626144 + L1ME1 LINE L1 3879 4245 -1970 711 199 0 0 chr1 39567520 39567651 -242626013 + FLAM_C SINE Alu 1 131 -12 3135 172 67 199 chr1 39567651 39568236 -242625428 + L1ME1 LINE L1 4245 4906 -1309 1557 163 32 0 chr1 39568236 39568515 -242625149 + AluJb SINE Alu 23 309 0 3135 172 67 199 chr1 39568515 39568810 -242624854 + L1ME1 LINE L1 4906 5238 -977 2147 117 0 7 chr1 39568810 39569119 -242624545 + AluSg SINE Alu 1 307 -3 3135 172 67 199 chr1 39569119 39569156 -242624508 + L1ME1 LINE L1 5238 5278 -937 1622 166 7 58 chr1 39569156 39569464 -242624200 + AluJb SINE Alu 1 292 -20 3135 172 67 199 chr1 39569464 39569734 -242623930 + L1ME1 LINE L1 5278 5098 -1117 2191 98 27 7 chr1 39569734 39570030 -242623634 + AluSx SINE Alu 1 302 -10 3135 172 67 199 chr1 39570030 39570247 -242623417 + L1ME1 LINE L1 5097 5341 -874 227 27 0 54 chr1 39570266 39570303 -242623361 + (TTTG)n Simple_repeat Simple_repeat 3 37 0 1123 168 0 0 chr1 39570307 39570468 -242623196 - AluJb SINE Alu -23 289 129 2755 184 27 65 chr1 39570476 39570781 -242622883 + L1ME1 LINE L1 5381 5696 -539 2216 131 0 0 chr1 39570781 39571087 -242622577 + AluSx SINE Alu 1 306 -6 2755 184 27 65 chr1 39571087 39571306 -242622358 + L1ME1 LINE L1 5696 5869 -366 2165 127 0 10 chr1 39571306 39571614 -242622050 + AluSx SINE Alu 2 306 -6 2755 184 27 65 chr1 39571614 39571855 -242621809 + L1ME1 LINE L1 5869 6118 -117 425 210 57 0 chr1 39571893 39572017 -242621647 + L1MB7 LINE L1 6045 6175 -9 445 256 42 30 chr1 39572017 39572285 -242621379 + L1MA10 LINE L1 5891 6327 -5 2199 106 3 7 chr1 39572694 39572997 -242620667 + AluSq SINE Alu 1 302 -11 2010 174 19 11 chr1 39573862 39574224 -242619440 + MLT1A1 LTR MaLR 1 365 0 256 136 0 99 chr1 39574393 39574474 -242619190 + (CAAAAA)n Simple_repeat Simple_repeat 5 77 0 2402 90 0 3 chr1 39576238 39576538 -242617126 + AluSp SINE Alu 1 299 -14 668 249 143 46 chr1 39576538 39576640 -242617024 + MIR SINE MIR 22 113 -149 2010 128 13 7 chr1 39576640 39576944 -242616720 + AluSc SINE Alu 1 306 -3 668 249 143 46 chr1 39576944 39577058 -242616606 + MIR SINE MIR 113 259 -3 426 39 0 0 chr1 39577065 39577117 -242616547 + (CAT)n Simple_repeat Simple_repeat 3 54 0 919 305 89 60 chr1 39577128 39578006 -242615658 + L2 LINE L2 688 1590 -1724 677 132 45 196 chr1 39578006 39578226 -242615438 + MER5A DNA MER1_type 1 187 -2 483 323 135 33 chr1 39578293 39578333 -242615331 + L2 LINE L2 2599 2633 -680 2194 168 57 19 chr1 39578333 39578526 -242615138 + Tigger2a DNA MER2_type 1 185 -2523 2216 122 0 0 chr1 39578526 39578829 -242614835 - AluSx SINE Alu -9 303 1 2373 96 0 0 chr1 39578837 39579139 -242614525 - AluY SINE Alu -9 302 1 2194 168 57 19 chr1 39579139 39579354 -242614310 + Tigger2a DNA MER2_type 191 434 0 483 323 135 33 chr1 39579354 39579943 -242613721 + L2 LINE L2 2633 3296 -17 201 298 91 58 chr1 39579945 39580066 -242613598 + L2 LINE L2 2928 3052 -220 418 288 54 18 chr1 39580187 39580298 -242613366 + L2 LINE L2 3145 3259 -13 518 275 84 39 chr1 39580363 39580541 -242613123 + MIR SINE MIR 48 233 -29 252 0 0 0 chr1 39582060 39582088 -242611576 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 838 206 24 0 chr1 39582745 39582910 -242610754 + MER96 DNA MER1_type? 7 175 0 946 301 54 9 chr1 39583538 39583963 -242609701 + L1MEc LINE L1 22 465 -5931 537 215 40 13 chr1 39583956 39584105 -242609559 + L1M4 LINE L1 2907 3059 -3087 * 830 221 25 0 chr1 39584105 39584304 -242609360 + MLT1C LTR MaLR 192 395 -72 284 133 100 0 chr1 39585020 39585080 -242608584 - AluSc SINE Alu 0 299 234 1625 178 7 4 chr1 39585229 39585551 -242608113 - AluJo SINE Alu 0 323 1 953 127 15 0 chr1 39586091 39586225 -242607439 + AluJo SINE Alu 1 136 -176 303 286 136 5 chr1 39586361 39586560 -242607104 + L1MC4a LINE L1 5689 5913 -1895 2115 136 7 0 chr1 39586631 39586941 -242606723 + AluSx SINE Alu 1 312 0 477 210 65 62 chr1 39586985 39587230 -242606434 + L1M4 LINE L1 3047 3295 -2851 2384 104 0 10 chr1 39587230 39587539 -242606125 + AluSx SINE Alu 1 306 -6 477 210 65 62 chr1 39587539 39587569 -242606095 + L1M4 LINE L1 3295 3323 -2823 984 209 67 0 chr1 39587573 39587783 -242605881 + MER58A DNA MER1_type 1 224 0 605 172 91 159 chr1 39587784 39587882 -242605782 + LTR37B LTR ERV1 114 217 -251 283 59 20 20 chr1 39587882 39587933 -242605731 + (TA)n Simple_repeat Simple_repeat 1 51 0 605 172 91 159 chr1 39587933 39587976 -242605688 + LTR37B LTR ERV1 217 261 -207 1706 201 7 7 chr1 39587976 39588280 -242605384 + AluJo SINE Alu 1 304 -8 605 172 91 159 chr1 39588280 39588509 -242605155 + LTR37B LTR ERV1 261 460 -8 402 280 111 32 chr1 39588560 39588749 -242604915 - L3 LINE CR1 -3 1574 1371 184 321 54 0 chr1 39588951 39589007 -242604657 - L2 LINE L2 -10 3262 3204 15492 152 11 16 chr1 39589031 39589674 -242603990 + L1PA14 LINE L1 2154 2799 -3362 2290 113 3 0 chr1 39589674 39589975 -242603689 + AluSq SINE Alu 1 302 -11 15492 152 11 16 chr1 39589975 39593363 -242600301 + L1PA14 LINE L1 2799 6158 -3 2154 80 98 0 chr1 39593365 39593641 -242600023 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr1 39593944 39593973 -242599691 + AT_rich Low_complexity Low_complexity 1 29 0 184 338 0 0 chr1 39594464 39594541 -242599123 + L2 LINE L2 1004 1080 -2234 2434 95 10 0 chr1 39594735 39595041 -242598623 - AluSg SINE Alu -1 309 1 1436 182 4 32 chr1 39595043 39595296 -242598368 - AluJo SINE Alu -18 294 49 224 316 18 0 chr1 39595384 39595441 -242598223 - L2 LINE L2 0 3313 3256 541 289 50 35 chr1 39595563 39595702 -242597962 + L1MC4 LINE L1 5635 5770 -2038 2032 122 14 7 chr1 39595702 39595997 -242597667 + AluSx SINE Alu 1 297 -15 2206 97 0 0 chr1 39595997 39596284 -242597380 + AluY SINE Alu 1 288 -23 541 289 50 35 chr1 39596284 39596295 -242597369 + L1MC4 LINE L1 5770 5779 -2029 275 26 51 0 chr1 39596295 39596334 -242597330 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2440 83 0 3 chr1 39596334 39596646 -242597018 + AluY SINE Alu 1 311 0 541 289 50 35 chr1 39596646 39596831 -242596833 + L1MC4 LINE L1 5778 5978 -1830 2395 100 0 0 chr1 39596912 39597221 -242596443 - AluSg SINE Alu -1 309 1 440 315 47 51 chr1 39597302 39597379 -242596285 + L2 LINE L2 2735 2811 -461 2240 92 7 10 chr1 39597379 39597682 -242595982 + AluSc SINE Alu 1 302 -7 440 315 47 51 chr1 39597682 39598058 -242595606 + L2 LINE L2 2811 3272 0 483 345 138 28 chr1 39598067 39598458 -242595206 - L2 LINE L2 -2519 795 362 6288 136 31 17 chr1 39599354 39600900 -242592764 - L1MA4A LINE L1 -7 7358 5806 249 217 24 36 chr1 39600909 39600992 -242592672 + L1MC4 LINE L1 6614 6695 -1347 252 109 0 0 chr1 39600994 39601040 -242592624 + LTR66 LTR ERVL 394 439 -171 303 250 0 0 chr1 39601040 39601096 -242592568 - L1MC4 LINE L1 -1341 6701 6646 1166 178 0 5 chr1 39601101 39601303 -242592361 - AluJo SINE Alu -24 288 88 601 92 31 0 chr1 39601328 39601426 -242592238 - L1 LINE L1 -1404 4742 4642 1116 187 0 52 chr1 39601431 39601661 -242592003 + AluJo SINE Alu 5 222 -90 8072 164 44 38 chr1 39601661 39602732 -242590932 - L1MA4A LINE L1 -2164 5044 3955 1551 161 27 0 chr1 39602732 39602993 -242590671 - AluJo SINE Alu -12 300 33 8072 164 44 38 chr1 39602993 39603709 -242589955 - L1MA4A LINE L1 -3253 3955 3245 674 148 9 9 chr1 39603714 39603822 -242589842 - FLAM_C SINE Alu -10 133 26 7785 136 51 28 chr1 39603846 39604690 -242588974 - L1MA4A LINE L1 -3956 3253 2361 1473 186 43 0 chr1 39604690 39604969 -242588695 - AluJb SINE Alu -21 291 1 7785 136 51 28 chr1 39604969 39605559 -242588105 - L1MA4A LINE L1 -4848 2361 1786 3767 213 84 28 chr1 39605531 39606436 -242587228 - L1MA4A LINE L1 -6161 1048 93 * 1761 101 72 0 chr1 39606622 39606899 -242586765 + AluSx SINE Alu 1 297 -15 2445 71 0 0 chr1 39609221 39609531 -242584133 + AluY SINE Alu 1 310 -1 1460 109 87 0 chr1 39609539 39609768 -242583896 + AluSg SINE Alu 60 308 -2 734 240 87 58 chr1 39610078 39610320 -242583344 + MIR SINE MIR 14 262 0 221 300 148 74 chr1 39610333 39610563 -242583101 + L2 LINE L2 3001 3247 -25 180 176 0 0 chr1 39612012 39612046 -242581618 + T-rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr1 39612259 39612281 -242581383 + (A)n Simple_repeat Simple_repeat 1 22 0 2145 130 0 0 chr1 39612952 39613260 -242580404 + AluSx SINE Alu 1 308 -4 440 264 25 41 chr1 39615529 39615585 -242578079 + L2 LINE L2 3153 3208 -64 1667 173 10 3 chr1 39615585 39615885 -242577779 - AluJo SINE Alu -10 302 1 440 264 25 41 chr1 39615885 39615949 -242577715 + L2 LINE L2 3208 3271 -1 2281 112 0 0 chr1 39615981 39616293 -242577371 - AluSx SINE Alu 0 312 1 493 292 156 24 chr1 39616811 39617039 -242576625 - MIR SINE MIR -8 254 3 2057 131 0 3 chr1 39618729 39619034 -242574630 + AluSx SINE Alu 1 304 -8 290 313 36 0 chr1 39619265 39619348 -242574316 - L2 LINE L2 -2 3311 3226 747 300 85 22 chr1 39619388 39619788 -242573876 + L1MEc LINE L1 35 459 -5937 779 319 119 36 chr1 39620221 39620275 -242573389 - L2 LINE L2 -810 2504 2456 1911 104 61 0 chr1 39620275 39620553 -242573111 + AluSg SINE Alu 1 295 -15 779 319 119 36 chr1 39620553 39621198 -242572466 - L2 LINE L2 -858 2456 1747 186 163 302 0 chr1 39621215 39621258 -242572406 + L2 LINE L2 3258 3313 0 1000 157 59 9 chr1 39621438 39621672 -242571992 + L1M4 LINE L1 5468 5711 -473 22 35 0 0 chr1 39621729 39621758 -242571906 + AT_rich Low_complexity Low_complexity 1 29 0 357 242 24 18 chr1 39621774 39621939 -242571725 + (TA)n Simple_repeat Simple_repeat 1 166 0 245 207 12 37 chr1 39621951 39622033 -242571631 + (TA)n Simple_repeat Simple_repeat 1 80 0 2808 120 12 0 chr1 39622034 39622458 -242571206 + L1MB7 LINE L1 5646 6074 -110 1949 138 3 0 chr1 39622483 39622779 -242570885 + AluSx SINE Alu 1 297 -15 292 201 101 59 chr1 39623165 39623334 -242570330 + Charlie7 DNA MER1_type 2434 2609 -3 362 344 106 51 chr1 39623349 39623694 -242569970 + L2 LINE L2 2770 3148 -124 1635 170 42 0 chr1 39623694 39623982 -242569682 - AluJb SINE Alu -12 300 1 362 344 106 51 chr1 39623982 39624113 -242569551 + L2 LINE L2 3148 3270 -2 409 238 90 25 chr1 39624484 39624606 -242569058 - L2 LINE L2 0 3313 3184 307 215 138 109 chr1 39625281 39625382 -242568282 - L1ME4a LINE L1 -195 5926 5829 730 142 24 31 chr1 39625382 39625509 -242568155 - FLAM_A SINE Alu -7 126 1 307 215 138 109 chr1 39625509 39625747 -242567917 - L1ME4a LINE L1 -292 5829 5577 425 275 136 31 chr1 39625757 39625952 -242567712 - L1ME4a LINE L1 -611 5510 5326 2120 113 0 3 chr1 39625952 39626262 -242567402 - AluSx SINE Alu -3 309 1 425 275 136 31 chr1 39626262 39626294 -242567370 - L1ME4a LINE L1 -795 5326 5299 2056 93 3 17 chr1 39626708 39626999 -242566665 + AluSc SINE Alu 3 289 -20 784 267 18 24 chr1 39627034 39627284 -242566380 + MIR SINE MIR 3 251 -11 1029 217 52 22 chr1 39627292 39627436 -242566228 + AluJo SINE Alu 3 141 -171 1832 134 7 49 chr1 39627436 39627742 -242565922 + AluSx SINE Alu 4 296 -16 1029 217 52 22 chr1 39627742 39627869 -242565795 + AluJo SINE Alu 141 282 -30 297 0 0 0 chr1 39628354 39628387 -242565277 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 203 273 227 38 chr1 39628600 39628732 -242564932 - MIR SINE MIR -36 226 70 331 287 10 40 chr1 39629436 39629537 -242564127 + MIR3 SINE MIR 9 106 -102 263 176 98 0 chr1 39629633 39629684 -242563980 + Charlie8 DNA MER1_type 222 277 -2140 243 88 0 0 chr1 39633062 39633096 -242560568 + (CTG)n Simple_repeat Simple_repeat 3 36 0 255 228 25 25 chr1 39633634 39633713 -242559951 + CT-rich Low_complexity Low_complexity 2 80 0 225 278 8 90 chr1 39634470 39634603 -242559061 + L3b LINE CR1 1332 1453 -130 229 343 112 28 chr1 39634685 39634863 -242558801 + L3b LINE CR1 1362 1554 -29 191 36 36 0 chr1 39636164 39636192 -242557472 + (CA)n Simple_repeat Simple_repeat 2 30 0 616 326 62 5 chr1 39637490 39637714 -242555950 - MIR SINE MIR -6 256 20 616 248 111 0 chr1 39639622 39639775 -242553889 - MIR SINE MIR -72 190 21 459 0 0 0 chr1 39641273 39641324 -242552340 + (CA)n Simple_repeat Simple_repeat 1 51 0 181 286 20 0 chr1 39641364 39641413 -242552251 + L2 LINE L2 3253 3302 -11 431 305 115 20 chr1 39641484 39641684 -242551980 - MIR SINE MIR -27 235 17 319 218 121 40 chr1 39641796 39641920 -242551744 - Charlie8 DNA MER1_type -2246 171 38 1883 159 3 0 chr1 39642262 39642570 -242551094 + AluJo SINE Alu 1 309 -3 738 309 177 29 chr1 39642691 39642904 -242550760 - L2 LINE L2 -338 2976 2796 784 169 0 8 chr1 39642904 39643034 -242550630 - FLAM_C SINE Alu -3 130 2 738 309 177 29 chr1 39643034 39643545 -242550119 - L2 LINE L2 -518 2796 2145 249 296 0 0 chr1 39644473 39644527 -242549137 - L2 LINE L2 -8 3264 3211 265 340 154 26 chr1 39644626 39644782 -242548882 - L2 LINE L2 -532 2782 2607 957 214 0 6 chr1 39644784 39644957 -242548707 - MER5A DNA MER1_type -1 188 17 335 102 2 0 chr1 39644959 39645010 -242548654 - FLAM_A SINE Alu -31 102 58 409 307 63 89 chr1 39645121 39645475 -242548189 - L2 LINE L2 -773 2541 2202 2090 124 3 0 chr1 39645475 39645774 -242547890 + AluSx SINE Alu 1 300 -12 409 307 63 89 chr1 39645774 39645927 -242547737 - L2 LINE L2 -1112 2202 2047 253 283 91 0 chr1 39646596 39646691 -242546973 - MIR SINE MIR -73 135 32 829 224 89 14 chr1 39646691 39646905 -242546759 + MIR SINE MIR 2 231 -31 221 353 121 0 chr1 39647615 39647731 -242545933 - MIR SINE MIR -63 145 16 25 31 0 0 chr1 39647891 39647923 -242545741 + GC_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 39648833 39648871 -242544793 + GC_rich Low_complexity Low_complexity 1 38 0 202 217 17 0 chr1 39650290 39650350 -242543314 + (TG)n Simple_repeat Simple_repeat 1 61 0 200 217 52 0 chr1 39651578 39651693 -242541971 + (CCCCAG)n Simple_repeat Simple_repeat 1 121 0 1401 65 0 27 chr1 39652903 39653087 -242540577 + AluSc SINE Alu 118 296 -13 566 189 81 0 chr1 39653366 39653453 -242540211 + MER96B DNA MER1_type? 5 84 -333 2325 80 40 0 chr1 39653453 39653753 -242539911 + AluSx SINE Alu 1 312 0 2362 84 0 7 chr1 39653755 39654054 -242539610 + AluSq SINE Alu 1 297 -16 1961 131 32 0 chr1 39654056 39654338 -242539326 - AluSx SINE Alu -21 291 1 566 189 81 0 chr1 39654338 39654392 -242539272 + MER96B DNA MER1_type? 84 164 -253 184 261 89 51 chr1 39654476 39654568 -242539096 - L2 LINE L2 -530 2784 2682 2360 104 0 10 chr1 39654568 39654875 -242538789 + AluSq SINE Alu 1 304 -9 184 261 89 51 chr1 39654875 39654939 -242538725 - L2 LINE L2 -632 2682 2622 458 246 0 63 chr1 39655044 39655122 -242538542 + MER5A DNA MER1_type 1 68 -121 2444 51 0 48 chr1 39655122 39655435 -242538229 + AluY SINE Alu 1 298 -13 458 246 0 63 chr1 39655435 39655498 -242538166 + MER5A DNA MER1_type 68 133 -56 3170 205 45 51 chr1 39655500 39656206 -242537458 - L1MB8 LINE L1 0 6178 5469 2423 97 3 0 chr1 39656206 39656515 -242537149 - AluSp SINE Alu -3 310 1 2225 114 0 13 chr1 39656515 39656821 -242536843 - AluSg SINE Alu -8 302 1 3170 205 45 51 chr1 39656821 39657108 -242536556 - L1MB8 LINE L1 -707 5471 5189 26 0 0 0 chr1 39657108 39657134 -242536530 + AT_rich Low_complexity Low_complexity 1 26 0 841 160 0 0 chr1 39657147 39657278 -242536386 - FLAM_C SINE Alu -4 139 9 889 188 6 61 chr1 39657282 39657463 -242536201 - FAM SINE Alu 0 175 5 682 180 0 50 chr1 39657468 39657535 -242536129 - L1MB8 LINE L1 -951 5195 5126 2313 104 10 0 chr1 39657535 39657844 -242535820 - AluSx SINE Alu 0 312 1 682 180 0 50 chr1 39657844 39657937 -242535727 - L1MB8 LINE L1 -1020 5126 5043 909 138 8 0 chr1 39657956 39658086 -242535578 - AluSq/x SINE Alu -182 131 1 351 0 0 0 chr1 39658247 39658286 -242535378 + (TG)n Simple_repeat Simple_repeat 1 39 0 1899 144 24 27 chr1 39658748 39659046 -242534618 - AluJo SINE Alu -15 297 1 1997 125 54 0 chr1 39659181 39659477 -242534187 - AluJo SINE Alu 0 312 1 429 217 75 0 chr1 39659861 39659967 -242533697 + Charlie8 DNA MER1_type 38 151 -2266 1316 140 20 120 chr1 39660118 39660406 -242533258 + MER33 DNA MER1_type 5 253 -2332 2085 131 0 14 chr1 39660406 39660703 -242532961 + AluJb SINE Alu 1 293 -19 1316 140 20 120 chr1 39660703 39660765 -242532899 + MER33 DNA MER1_type 253 320 -4 269 360 53 9 chr1 39660847 39660961 -242532703 + MIR SINE MIR 2 120 -142 211 376 40 10 chr1 39661433 39661534 -242532130 + L2 LINE L2 3153 3256 -16 731 232 111 31 chr1 39661534 39661770 -242531894 + MIR SINE MIR 4 255 -7 2513 81 3 0 chr1 39662001 39662308 -242531356 + AluSg SINE Alu 1 308 -2 387 331 9 17 chr1 39662759 39662906 -242530758 + MIR SINE MIR 5 148 -62 432 0 0 0 chr1 39663832 39663880 -242529784 + (TG)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr1 39664137 39664158 -242529506 + (TG)n Simple_repeat Simple_repeat 1 21 0 222 160 0 0 chr1 39664917 39664967 -242528697 + (TG)n Simple_repeat Simple_repeat 2 51 0 2379 90 0 3 chr1 39666330 39666631 -242527033 - AluSq SINE Alu -13 300 1 1918 151 14 3 chr1 39666649 39666941 -242526723 + AluJb SINE Alu 1 295 -17 2141 113 35 56 chr1 39666973 39667039 -242526625 - MLT1A1 LTR MaLR 0 365 299 2062 141 17 0 chr1 39667039 39667336 -242526328 - AluSx SINE Alu -10 302 1 2141 113 35 56 chr1 39667336 39667642 -242526022 - MLT1A1 LTR MaLR -66 299 1 221 146 21 0 chr1 39667658 39667706 -242525958 + GA-rich Low_complexity Low_complexity 2 50 0 1696 158 108 0 chr1 39667706 39667985 -242525679 + AluJo SINE Alu 1 309 -3 428 302 201 0 chr1 39668460 39668639 -242525025 + MIR SINE MIR 48 262 0 393 260 68 62 chr1 39668823 39668969 -242524695 + MIR SINE MIR 68 214 -48 1457 275 313 20 chr1 39670634 39671725 -242521939 + L2 LINE L2 1566 2975 -339 623 238 53 26 chr1 39672047 39672236 -242521428 - MER113 DNA MER1_type? -33 488 295 207 224 132 13 chr1 39672398 39672474 -242521190 + MIR SINE MIR 174 258 -4 215 256 105 47 chr1 39672536 39672622 -242521042 - MIR3 SINE MIR -41 167 77 2150 139 3 3 chr1 39672968 39673271 -242520393 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr1 39673271 39673294 -242520370 + AT_rich Low_complexity Low_complexity 1 23 0 261 309 150 48 chr1 39674209 39674494 -242519170 - L2 LINE L2 -443 2871 2536 1904 154 3 35 chr1 39674494 39674806 -242518858 + AluJo SINE Alu 1 302 -10 261 309 150 48 chr1 39674806 39674899 -242518765 - L2 LINE L2 -778 2536 2454 1159 182 34 19 chr1 39674899 39675163 -242518501 + L1MD3 LINE L1 7727 7994 -1 356 353 81 23 chr1 39675166 39675387 -242518277 - L2 LINE L2 -853 2461 2228 441 286 30 8 chr1 39675496 39675629 -242518035 - MIR SINE MIR -3 259 124 2457 76 0 22 chr1 39675701 39676017 -242517647 - AluSx SINE Alu -3 309 1 296 203 72 0 chr1 39676382 39676451 -242517213 + MER5A DNA MER1_type 2 75 -114 469 227 30 0 chr1 39676546 39676678 -242516986 + L1MC4a LINE L1 5760 5895 -1913 1879 155 13 13 chr1 39676694 39676998 -242516666 + AluJb SINE Alu 1 304 -8 2394 84 0 0 chr1 39677143 39677439 -242516225 - AluSc SINE Alu -13 296 1 21 0 0 0 chr1 39677515 39677536 -242516128 + AT_rich Low_complexity Low_complexity 1 21 0 526 193 128 0 chr1 39678040 39678149 -242515515 - L2 LINE L2 -6 3307 3185 1519 137 105 25 chr1 39678411 39678688 -242514976 + AluJo SINE Alu 1 299 -13 2444 68 3 3 chr1 39679145 39679439 -242514225 + AluSq SINE Alu 5 298 -15 436 263 53 58 chr1 39679447 39679637 -242514027 + MER5A DNA MER1_type 1 189 0 6181 124 44 23 chr1 39680832 39682726 -242510938 + L1MA5A LINE L1 4125 6063 -234 2345 102 0 0 chr1 39682726 39683031 -242510633 + AluSx SINE Alu 1 305 -7 6181 124 44 23 chr1 39683031 39683271 -242510393 + L1MA5A LINE L1 6063 6297 0 1383 122 0 9 chr1 39684352 39684582 -242509082 + L1MA2 LINE L1 6077 6304 0 1584 180 4 8 chr1 39684800 39685061 -242508603 + AluJo SINE Alu 1 260 -52 2420 84 0 3 chr1 39685127 39685437 -242508227 - AluSg SINE Alu -1 309 1 1011 196 0 11 chr1 39686007 39686186 -242507478 - AluJo SINE Alu -33 279 103 1985 111 4 11 chr1 39686393 39686663 -242507001 + AluSx SINE Alu 26 293 -19 180 0 0 0 chr1 39686664 39686684 -242506980 + (GA)n Simple_repeat Simple_repeat 1 20 0 752 154 0 0 chr1 39686685 39686795 -242506869 - AluJo SINE Alu -201 111 2 189 271 0 34 chr1 39687076 39687135 -242506529 + MIR SINE MIR 86 142 -120 1231 186 116 25 chr1 39688082 39688357 -242505307 + AluJo SINE Alu 1 300 -2 346 284 68 49 chr1 39688601 39688763 -242504901 + MIR SINE MIR 84 248 -14 256 143 0 82 chr1 39688857 39688906 -242504758 + L2 LINE L2 3210 3254 -18 519 233 70 8 chr1 39689785 39689914 -242503750 + MIR SINE MIR 124 260 -2 441 313 26 57 chr1 39690858 39691050 -242502614 - MIR3 SINE MIR -3 205 20 951 198 24 0 chr1 39691219 39691386 -242502278 - FAM SINE Alu 0 175 5 2198 114 3 0 chr1 39691883 39692173 -242501491 - AluSx SINE Alu -21 291 1 367 337 84 16 chr1 39694224 39694414 -242499250 + MIR SINE MIR 54 256 -6 609 144 0 0 chr1 39695330 39695420 -242498244 - AluSg/x SINE Alu -14 298 209 1191 68 14 0 chr1 39695421 39695569 -242498095 + AluY SINE Alu 150 299 -12 1725 96 0 5 chr1 39695571 39695791 -242497873 - AluSq SINE Alu -94 219 1 38 22 0 0 chr1 39695821 39695866 -242497798 + AT_rich Low_complexity Low_complexity 1 45 0 315 241 103 35 chr1 39696504 39696552 -242497112 - L1ME3A LINE L1 -1 6169 6126 2025 135 37 0 chr1 39696552 39696848 -242496816 + AluSg SINE Alu 1 307 -3 315 241 103 35 chr1 39696848 39696915 -242496749 - L1ME3A LINE L1 -44 6126 6046 252 86 0 0 chr1 39697636 39697671 -242495993 + (A)n Simple_repeat Simple_repeat 1 35 0 183 42 0 0 chr1 39698991 39699015 -242494649 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2357 119 0 0 chr1 39699296 39699606 -242494058 + AluSx SINE Alu 1 310 -2 2287 96 0 3 chr1 39699607 39699898 -242493766 + AluSc SINE Alu 2 291 -18 2457 86 0 0 chr1 39700306 39700608 -242493056 + AluY SINE Alu 1 302 -9 2124 128 0 3 chr1 39700673 39700963 -242492701 - AluSx SINE Alu -23 289 1 626 143 151 0 chr1 39701612 39701738 -242491926 + MER3 DNA MER1_type 2 146 -63 608 110 0 11 chr1 39701790 39701881 -242491783 + MER3 DNA MER1_type 120 209 0 318 135 0 19 chr1 39701837 39701889 -242491775 - MER3 DNA MER1_type -119 90 40 * 1027 133 51 6 chr1 39701950 39702108 -242491556 + AluJb SINE Alu 142 306 -6 1764 166 32 7 chr1 39702199 39702483 -242491181 + AluJb SINE Alu 1 291 -21 506 232 209 11 chr1 39702484 39702661 -242491003 - MIR SINE MIR -49 213 2 27 0 0 26 chr1 39703404 39703422 -242490242 + AT_rich Low_complexity Low_complexity 1 18 -19 324 0 0 0 chr1 39703422 39703458 -242490206 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 0 0 26 chr1 39703458 39703477 -242490187 + AT_rich Low_complexity Low_complexity 18 37 0 221 193 193 12 chr1 39704010 39704093 -242489571 - MIR SINE MIR -56 206 109 1884 168 0 7 chr1 39704363 39704666 -242488998 + AluJb SINE Alu 12 312 0 2216 110 3 23 chr1 39704712 39705020 -242488644 + AluSp SINE Alu 1 302 -11 4435 133 27 1 chr1 39705120 39705826 -242487838 + L1MC1 LINE L1 5595 6318 -15 1626 180 30 20 chr1 39706564 39706869 -242486795 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr1 39706919 39706942 -242486722 + AT_rich Low_complexity Low_complexity 1 23 0 293 250 0 12 chr1 39707313 39707397 -242486267 - MIR SINE MIR -5 257 175 1943 157 0 3 chr1 39707437 39707737 -242485927 + AluJb SINE Alu 1 299 -13 22 0 0 0 chr1 39707737 39707759 -242485905 + AT_rich Low_complexity Low_complexity 1 22 0 1986 155 0 10 chr1 39707761 39708071 -242485593 + AluSx SINE Alu 1 307 -5 187 309 138 11 chr1 39709093 39709187 -242484477 - MIR SINE MIR -64 144 39 1861 171 0 7 chr1 39709200 39709504 -242484160 - AluJo SINE Alu -10 302 1 1639 142 21 98 chr1 39709600 39709803 -242483861 - AluJo SINE Alu -1 311 143 2418 88 3 0 chr1 39709803 39710099 -242483565 + AluSp SINE Alu 1 297 -16 1639 142 21 98 chr1 39710099 39710232 -242483432 - AluJo SINE Alu -169 143 1 2585 68 0 3 chr1 39710374 39710683 -242482981 + AluSc SINE Alu 1 308 -1 2145 135 72 3 chr1 39710743 39711106 -242482558 + MLT1B LTR MaLR 1 388 -2 1943 162 12 17 chr1 39711349 39711695 -242481969 - MER2 DNA MER2_type 0 344 1 272 285 132 14 chr1 39712686 39712830 -242480834 + L1ME4a LINE L1 5949 6109 -12 22 56 0 0 chr1 39712854 39712890 -242480774 + AT_rich Low_complexity Low_complexity 1 36 0 281 301 107 0 chr1 39713221 39713324 -242480340 + MIR SINE MIR 30 143 -65 2502 84 0 0 chr1 39713797 39714108 -242479556 + AluSx SINE Alu 1 311 -1 426 257 189 6 chr1 39714702 39714877 -242478787 - MIR SINE MIR -38 224 18 458 17 17 0 chr1 39714878 39714937 -242478727 + (CTATA)n Simple_repeat Simple_repeat 4 63 0 311 289 113 25 chr1 39715108 39715267 -242478397 - MIR SINE MIR -26 236 64 2081 101 11 3 chr1 39715753 39716039 -242477625 + AluSp SINE Alu 20 307 -6 2394 48 65 0 chr1 39716776 39717070 -242476594 + AluSp SINE Alu 1 313 0 1719 94 37 4 chr1 39717433 39717678 -242475986 + AluSg SINE Alu 54 306 -4 363 226 26 0 chr1 39717678 39717793 -242475871 + L1ME1 LINE L1 5325 5442 -722 2297 95 0 3 chr1 39717945 39718241 -242475423 + AluSg SINE Alu 2 296 -14 2248 94 7 7 chr1 39718320 39718617 -242475047 + AluSq SINE Alu 1 297 -16 180 0 0 0 chr1 39719330 39719350 -242474314 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 39719579 39719600 -242474064 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 39719643 39719666 -242473998 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 461 163 12 0 chr1 39719672 39719752 -242473912 - FRAM/FAM SINE Alu -96 80 1 972 170 15 78 chr1 39719955 39720161 -242473503 - MER58A DNA MER1_type -31 193 1 203 327 93 0 chr1 39720172 39720279 -242473385 + MIR SINE MIR 30 146 -62 1279 250 80 37 chr1 39720590 39721026 -242472638 + LTR16A1 LTR ERVL 1 455 -2 622 294 52 45 chr1 39721031 39721320 -242472344 + HERV16 LTR ERVL 2 292 -4704 1266 182 101 12 chr1 39721351 39721609 -242472055 + AluJo SINE Alu 1 281 -31 261 139 0 0 chr1 39721625 39721668 -242471996 + (GA)n Simple_repeat Simple_repeat 2 44 0 1094 103 0 20 chr1 39721716 39721862 -242471802 + AluY SINE Alu 1 143 -168 2361 57 0 4 chr1 39721863 39722169 -242471495 + AluY SINE Alu 1 305 0 1518 224 55 24 chr1 39722169 39722476 -242471188 + L1MEc LINE L1 1888 2215 -4181 2512 85 0 0 chr1 39722476 39722782 -242470882 + AluY SINE Alu 1 306 -5 1518 224 55 24 chr1 39722782 39722925 -242470739 + L1MEc LINE L1 2215 2352 -4044 1464 190 114 49 chr1 39722932 39723380 -242470284 + L1ME1 LINE L1 5685 6161 -5 635 289 108 23 chr1 39723389 39723542 -242470122 + ERVL LTR ERVL 2306 2445 -3319 2184 104 7 0 chr1 39723542 39723850 -242469814 + AluSx SINE Alu 2 311 0 635 289 108 23 chr1 39723850 39724048 -242469616 + ERVL LTR ERVL 2445 2688 -3076 307 279 112 52 chr1 39724407 39724694 -242468970 + MER89-int LTR ERV1 6365 6668 -133 713 322 119 4 chr1 39725348 39725758 -242467906 + ERVL LTR ERVL 3027 3547 -2217 451 310 105 36 chr1 39725771 39726103 -242467561 + ERVL LTR ERVL 4552 5262 -90 940 230 97 53 chr1 39726219 39726570 -242467094 + LTR16A1 LTR ERVL 48 457 0 643 269 19 64 chr1 39727662 39727771 -242465893 + MIR SINE MIR 1 113 -149 2107 131 0 0 chr1 39727771 39728062 -242465602 - AluJo SINE Alu -21 291 1 643 269 19 64 chr1 39728062 39728216 -242465448 + MIR SINE MIR 113 252 -10 2418 76 0 7 chr1 39728668 39728972 -242464692 + AluSg1 SINE Alu 1 302 -7 183 162 0 0 chr1 39730648 39730685 -242462979 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 249 250 26 40 chr1 39730723 39730799 -242462865 - L2 LINE L2 -202 3070 2996 597 226 90 66 chr1 39730799 39731011 -242462653 + MIR SINE MIR 2 218 -44 501 184 55 0 chr1 39731236 39731345 -242462319 - L1MD3 LINE L1 0 7995 7881 188 369 50 14 chr1 39731360 39731501 -242462163 - L2 LINE L2 -575 2739 2594 805 258 13 26 chr1 39731985 39732218 -242461446 + MIR SINE MIR 3 232 -30 226 321 71 18 chr1 39732290 39732402 -242461262 + L2 LINE L2 3188 3305 -8 1576 180 14 34 chr1 39733125 39733267 -242460397 + AluJo SINE Alu 1 144 -168 1499 160 63 4 chr1 39733267 39733535 -242460129 + AluJb SINE Alu 14 297 -15 1576 180 14 34 chr1 39733535 39733686 -242459978 + AluJo SINE Alu 144 288 -24 243 0 0 0 chr1 39733687 39733701 -242459963 + (TG)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr1 39733701 39733728 -242459936 + (TG)n Simple_repeat Simple_repeat 2 28 0 454 284 50 11 chr1 39734175 39734376 -242459288 - MIR3 SINE MIR -53 209 3 328 287 65 0 chr1 39734968 39735076 -242458588 + MIR SINE MIR 63 177 -85 440 131 0 0 chr1 39735078 39735139 -242458525 + AluS SINE Alu 2 62 -256 348 43 0 0 chr1 39736012 39736058 -242457606 + (TG)n Simple_repeat Simple_repeat 1 46 0 1981 128 10 20 chr1 39736059 39736363 -242457301 - AluJo SINE Alu -9 303 3 204 256 0 0 chr1 39736750 39736793 -242456871 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2360 71 0 3 chr1 39736953 39737265 -242456399 - AluY SINE Alu 0 311 1 2182 225 141 82 chr1 39737342 39737469 -242456195 - HAL1 LINE L1 -5 2502 2384 2185 124 3 7 chr1 39737469 39737594 -242456070 + AluSx SINE Alu 1 125 -187 225 0 0 0 chr1 39737594 39737619 -242456045 + (CA)n Simple_repeat Simple_repeat 2 26 0 2185 124 3 7 chr1 39737619 39737800 -242455864 + AluSx SINE Alu 125 306 -6 2182 225 141 82 chr1 39737800 39738453 -242455211 - HAL1 LINE L1 -123 2384 1771 1849 155 7 10 chr1 39738453 39738750 -242454914 + AluSx SINE Alu 1 296 -16 2182 225 141 82 chr1 39738750 39738840 -242454824 - HAL1 LINE L1 -736 1771 1688 2354 106 0 0 chr1 39738840 39739143 -242454521 - AluSc SINE Alu -6 303 1 2182 225 141 82 chr1 39739143 39739459 -242454205 - HAL1 LINE L1 -819 1688 1244 1965 126 4 14 chr1 39739472 39739799 -242453865 - AluSx SINE Alu 0 334 11 305 278 110 47 chr1 39739815 39740006 -242453658 - HAL1 LINE L1 -1811 696 494 852 216 78 85 chr1 39740046 39740193 -242453471 - AluJo SINE Alu -31 281 134 2126 144 0 7 chr1 39740193 39740498 -242453166 - AluSx SINE Alu -9 303 1 189 0 0 0 chr1 39740498 39740519 -242453145 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2106 110 4 4 chr1 39740519 39740800 -242452864 - AluSc SINE Alu -28 281 1 852 216 78 85 chr1 39740800 39740933 -242452731 - AluJo SINE Alu -175 137 1 658 267 158 43 chr1 39740933 39741356 -242452308 - HAL1 LINE L1 -2034 473 2 1169 210 107 27 chr1 39742695 39742995 -242450669 + MER33 DNA MER1_type 1 324 0 198 0 0 0 chr1 39743724 39743746 -242449918 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 577 234 450 19 chr1 39744111 39744295 -242449369 - L1ME3 LINE L1 -49 6121 6017 2386 71 7 10 chr1 39744295 39744467 -242449197 - AluSp SINE Alu -6 307 135 2417 76 0 16 chr1 39744467 39744771 -242448893 - AluY SINE Alu -12 299 1 2386 71 7 10 chr1 39744771 39744906 -242448758 - AluSp SINE Alu -178 135 1 577 234 450 19 chr1 39744906 39744959 -242448705 - L1ME3 LINE L1 -153 6017 5856 1655 164 30 0 chr1 39745090 39745352 -242448312 + AluJb SINE Alu 11 280 -32 248 147 0 107 chr1 39745403 39745478 -242448186 + (TTCTCC)n Simple_repeat Simple_repeat 6 72 0 1857 145 68 70 chr1 39745622 39745799 -242447865 + MLT1C LTR MaLR 3 179 -211 324 48 0 0 chr1 39745799 39745841 -242447823 + (CA)n Simple_repeat Simple_repeat 2 43 0 1857 145 68 70 chr1 39745841 39746067 -242447597 + MLT1C LTR MaLR 179 325 -65 468 0 0 0 chr1 39746067 39746119 -242447545 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 2221 123 7 0 chr1 39746129 39746431 -242447233 - AluSx SINE Alu -7 305 2 481 193 14 7 chr1 39746432 39746572 -242447092 + CT-rich Low_complexity Low_complexity 2 142 0 1782 163 7 10 chr1 39746591 39746897 -242446767 - AluJb SINE Alu -2 310 6 299 236 28 0 chr1 39746903 39746975 -242446689 + MLT1C LTR MaLR 394 467 0 205 240 142 0 chr1 39748020 39748109 -242445555 + MIR SINE MIR 44 153 -62 2252 121 45 37 chr1 39748161 39748292 -242445372 + L1MB3 LINE L1 5776 5905 -278 2366 83 0 3 chr1 39748292 39748594 -242445070 - AluSx SINE Alu -11 301 1 2252 121 45 37 chr1 39748594 39748866 -242444798 + L1MB3 LINE L1 5905 6182 -1 233 329 188 0 chr1 39749082 39749252 -242444412 + MIR SINE MIR 1 202 -60 2150 127 0 19 chr1 39749254 39749561 -242444103 + AluSx SINE Alu 1 301 -11 2547 74 0 10 chr1 39749568 39749880 -242443784 + AluY SINE Alu 1 309 -2 1572 154 81 11 chr1 39749888 39750160 -242443504 + AluJb SINE Alu 1 291 -21 3116 147 4 0 chr1 39750369 39750838 -242442826 + MER70A LTR ERVL 1 471 -1 632 138 9 0 chr1 39750840 39750956 -242442708 + CT-rich Low_complexity Low_complexity 1 117 0 259 238 48 0 chr1 39751129 39751192 -242442472 + MIR SINE MIR 119 184 -78 181 244 0 0 chr1 39751194 39751235 -242442429 + L2 LINE L2 3265 3305 -8 953 84 8 0 chr1 39751253 39751372 -242442292 + AluSq/x SINE Alu 1 120 -193 506 318 166 28 chr1 39751399 39752164 -242441500 - L2 LINE L2 -778 2536 1648 2102 141 0 0 chr1 39752164 39752463 -242441201 + AluSx SINE Alu 1 299 -13 506 318 166 28 chr1 39752463 39752520 -242441144 - L2 LINE L2 -1666 1648 1600 714 145 0 17 chr1 39752766 39752883 -242440781 - AluJo SINE Alu -176 136 22 302 228 0 0 chr1 39752883 39752940 -242440724 - AluJ/FLAM SINE Alu -245 57 1 2362 90 3 0 chr1 39752995 39753284 -242440380 - AluSp SINE Alu -20 293 4 39 38 0 0 chr1 39753373 39753426 -242440238 + AT_rich Low_complexity Low_complexity 1 53 0 591 103 11 0 chr1 39753453 39753540 -242440124 - AluSq/x SINE Alu -209 104 17 1790 113 0 0 chr1 39754533 39754773 -242438891 - AluSg/x SINE Alu -6 304 65 2372 80 0 23 chr1 39754773 39755073 -242438591 - AluY SINE Alu -18 293 1 760 310 76 53 chr1 39755074 39755396 -242438268 + L2 LINE L2 1384 1697 -1617 1684 169 0 60 chr1 39755396 39755715 -242437949 + AluJo SINE Alu 1 300 -12 760 310 76 53 chr1 39755715 39756076 -242437588 + L2 LINE L2 1697 2083 -1231 516 88 0 0 chr1 39756140 39756220 -242437444 - Alu SINE Alu -1 311 232 1961 119 31 3 chr1 39756220 39756506 -242437158 + AluSq SINE Alu 14 307 -6 2517 69 0 22 chr1 39756509 39756826 -242436838 + AluY SINE Alu 1 310 -1 326 80 20 0 chr1 39756879 39756929 -242436735 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1357 198 81 34 chr1 39756942 39757067 -242436597 + AluJo SINE Alu 1 119 -193 2131 134 0 3 chr1 39757067 39757366 -242436298 - AluJb SINE Alu -14 298 1 1357 198 81 34 chr1 39757366 39757538 -242436126 + AluJo SINE Alu 119 312 0 2370 109 3 0 chr1 39757542 39757854 -242435810 + AluSq SINE Alu 1 313 0 453 314 20 49 chr1 39757861 39758191 -242435473 + L2 LINE L2 2723 3037 -235 332 298 165 46 chr1 39758533 39758751 -242434913 - MIR SINE MIR -2 260 17 263 252 45 81 chr1 39759519 39759630 -242434034 - MIR SINE MIR -70 192 86 702 224 6 7 chr1 39759708 39759886 -242433778 - L1MD3 LINE L1 -1 7994 7606 1946 157 0 0 chr1 39760501 39760810 -242432854 + AluSx SINE Alu 1 309 0 2022 106 50 36 chr1 39760854 39761155 -242432509 + AluSg SINE Alu 1 305 -5 894 156 21 0 chr1 39761740 39761881 -242431783 + FRAM SINE Alu 22 165 -11 681 134 183 49 chr1 39762158 39762322 -242431342 + AluJb SINE Alu 127 312 0 325 257 90 77 chr1 39762347 39762399 -242431265 - L2 LINE L2 -1284 2030 1980 1727 169 10 36 chr1 39762399 39762707 -242430957 + AluJo SINE Alu 5 304 -8 325 257 90 77 chr1 39762707 39762742 -242430922 - L2 LINE L2 -1334 1980 1947 1974 143 17 10 chr1 39762742 39763042 -242430622 + AluSx SINE Alu 1 302 -10 325 257 90 77 chr1 39763042 39763175 -242430489 - L2 LINE L2 -1367 1947 1806 219 69 0 0 chr1 39763798 39763827 -242429837 + (GA)n Simple_repeat Simple_repeat 2 30 0 2322 111 0 0 chr1 39764039 39764346 -242429318 + AluY SINE Alu 1 307 -4 561 239 0 0 chr1 39764431 39764540 -242429124 + FLAM_C SINE Alu 1 109 -34 251 254 0 0 chr1 39764545 39764604 -242429060 + (CAGA)n Simple_repeat Simple_repeat 3 61 0 1955 129 42 32 chr1 39764656 39764965 -242428699 - AluSx SINE Alu 0 312 1 1920 125 68 0 chr1 39764969 39765250 -242428414 - AluJb SINE Alu -1 311 12 2102 153 0 3 chr1 39765289 39765602 -242428062 - AluJb SINE Alu 0 312 1 629 133 0 0 chr1 39766441 39766539 -242427125 + FLAM_C SINE Alu 14 111 -32 414 0 0 0 chr1 39766554 39766600 -242427064 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1017 133 10 71 chr1 39766969 39767165 -242426499 - L1M3 LINE L1 -540 5643 5460 1021 167 65 57 chr1 39767302 39767547 -242426117 + MLT2B1 LTR ERVL 1 247 -273 1756 126 36 76 chr1 39767681 39767835 -242425829 + AluJo SINE Alu 1 139 -173 2289 104 0 7 chr1 39767835 39768143 -242425521 + AluSx SINE Alu 3 308 -4 1756 126 36 76 chr1 39768143 39768290 -242425374 + AluJo SINE Alu 139 290 -22 2506 79 0 3 chr1 39768593 39768896 -242424768 - AluSq SINE Alu -11 302 1 1801 159 13 60 chr1 39768944 39769327 -242424337 + MLT1A1 LTR MaLR 1 365 0 2050 124 0 0 chr1 39769370 39769637 -242424027 + AluSx SINE Alu 1 267 -45 675 200 74 0 chr1 39769679 39769814 -242423850 - AluJb SINE Alu -21 291 147 2348 89 27 0 chr1 39769831 39770123 -242423541 - AluSx SINE Alu -12 300 1 1103 273 63 10 chr1 39770474 39770873 -242422791 - LTR16A LTR ERVL -6 444 25 249 314 143 56 chr1 39770895 39771217 -242422447 + L2 LINE L2 2287 2636 -678 21 0 0 0 chr1 39771446 39771467 -242422197 + AT_rich Low_complexity Low_complexity 1 21 0 601 292 127 9 chr1 39771483 39771805 -242421859 + L1ME4a LINE L1 5563 5922 -199 2547 73 0 0 chr1 39772021 39772324 -242421340 + AluY SINE Alu 2 304 -7 184 128 21 21 chr1 39772418 39772465 -242421199 + (TATAA)n Simple_repeat Simple_repeat 1 47 0 2237 166 15 20 chr1 39772467 39772925 -242420739 - L1MB8 LINE L1 -336 5842 5387 971 169 12 0 chr1 39772930 39773090 -242420574 - FRAM SINE Alu 0 166 5 316 228 55 55 chr1 39773153 39773298 -242420366 - L1ME4a LINE L1 -13 6108 5964 229 232 49 37 chr1 39773396 39773478 -242420186 - L1ME4a LINE L1 -380 5786 5704 555 239 250 11 chr1 39773622 39773810 -242419854 - MIR SINE MIR -18 244 12 2165 113 51 20 chr1 39773953 39774306 -242419358 + THE1B LTR MaLR 1 364 0 276 275 156 24 chr1 39774383 39774594 -242419070 + L2 LINE L2 2641 2879 -435 2357 70 40 3 chr1 39774725 39775024 -242418640 + AluY SINE Alu 2 311 0 600 206 91 43 chr1 39775172 39775425 -242418239 - L1MC5 LINE L1 -36 7925 7661 235 209 16 126 chr1 39775457 39775698 -242417966 - L1MC4a LINE L1 0 7890 7624 1435 172 145 14 chr1 39775698 39775994 -242417670 + MER1B DNA MER1_type 1 335 -2 235 209 16 126 chr1 39775994 39776008 -242417656 - L1MC4a LINE L1 -266 7624 7674 1978 134 0 54 chr1 39776008 39776321 -242417343 - AluJo SINE Alu -16 296 1 235 209 16 126 chr1 39776321 39776390 -242417274 - L1MC4a LINE L1 -215 7675 7600 279 0 0 0 chr1 39776390 39776421 -242417243 + (TC)n Simple_repeat Simple_repeat 2 32 0 1303 159 14 5 chr1 39776461 39776668 -242416996 - AluJo SINE Alu -103 209 1 595 212 59 35 chr1 39776668 39776838 -242416826 - L1MC4 LINE L1 -408 7634 7461 271 363 0 0 chr1 39776958 39777038 -242416626 + L2 LINE L2 3141 3220 -52 206 146 0 24 chr1 39777265 39777306 -242416358 + (CCCCCA)n Simple_repeat Simple_repeat 2 41 0 358 267 30 61 chr1 39777851 39778016 -242415648 + MER20B DNA MER1_type 17 176 -607 258 105 0 0 chr1 39778070 39778108 -242415556 + (CA)n Simple_repeat Simple_repeat 1 38 0 253 274 12 12 chr1 39778195 39778279 -242415385 + MIR SINE MIR 65 148 -114 1350 174 0 5 chr1 39778281 39778494 -242415170 + AluJo SINE Alu 1 212 -100 658 135 19 0 chr1 39778503 39778641 -242415023 + AluJb SINE Alu 179 318 0 2059 104 87 0 chr1 39778733 39779020 -242414644 + AluSx SINE Alu 1 312 0 1921 135 0 38 chr1 39779532 39779961 -242413703 + AluSx SINE Alu 5 422 0 238 261 29 0 chr1 39780249 39780318 -242413346 + MIR SINE MIR 118 188 -74 1733 128 10 52 chr1 39780650 39780938 -242412726 + AluJo SINE Alu 1 276 -36 2384 87 3 0 chr1 39780945 39781233 -242412431 - AluSx SINE Alu -21 291 3 2035 105 0 0 chr1 39781519 39781786 -242411878 - AluSx SINE Alu -45 267 1 22 0 0 0 chr1 39782689 39782711 -242410953 + GC_rich Low_complexity Low_complexity 1 22 0 601 237 7 26 chr1 39783835 39783987 -242409677 - MIR SINE MIR 0 262 114 2360 113 7 0 chr1 39784803 39785105 -242408559 - AluSx SINE Alu -8 304 1 1458 172 92 8 chr1 39785242 39785504 -242408160 - AluJo SINE Alu -28 284 1 2120 116 14 7 chr1 39786090 39786384 -242407280 + AluSx SINE Alu 1 296 -16 998 257 16 8 chr1 39786459 39786704 -242406960 - MIR SINE MIR -1 261 15 2137 120 7 3 chr1 39786751 39787042 -242406622 + AluSx SINE Alu 1 292 -20 2029 72 91 0 chr1 39787275 39787572 -242406092 + AluY SINE Alu 2 322 0 1845 156 13 22 chr1 39787577 39787892 -242405772 + AluJo SINE Alu 1 312 0 369 184 30 0 chr1 39787892 39787970 -242405694 - MER2 DNA MER2_type -159 80 1 2315 108 13 0 chr1 39788071 39788378 -242405286 - AluSq SINE Alu -2 311 1 200 230 92 35 chr1 39788839 39788926 -242404738 - MIR3 SINE MIR -19 189 98 308 265 214 13 chr1 39791251 39791485 -242402179 + L2 LINE L2 1979 2259 -1055 2200 97 0 0 chr1 39791542 39791811 -242401853 + AluSx SINE Alu 3 271 -41 211 264 0 0 chr1 39791997 39792050 -242401614 + L2 LINE L2 2597 2649 -665 190 250 14 14 chr1 39792118 39792190 -242401474 + L2 LINE L2 2791 2862 -452 2687 61 0 0 chr1 39794304 39794615 -242399049 + AluSx SINE Alu 1 311 -1 2501 76 7 0 chr1 39795268 39795571 -242398093 - AluSg SINE Alu -5 305 1 241 274 14 14 chr1 39795911 39795984 -242397680 + MLT1K LTR MaLR 516 588 0 2361 107 7 0 chr1 39796213 39796513 -242397151 - AluSx SINE Alu -10 302 1 2356 115 0 6 chr1 39796682 39796995 -242396669 + AluSx SINE Alu 1 311 -1 2178 132 16 0 chr1 39797072 39797375 -242396289 - AluSx SINE Alu -4 308 1 2158 141 3 0 chr1 39797457 39797756 -242395908 - AluSx SINE Alu -12 300 1 418 312 132 55 chr1 39798407 39798539 -242395125 - L2 LINE L2 0 3272 3152 2189 123 0 0 chr1 39798539 39798824 -242394840 + AluSx SINE Alu 6 290 -22 418 312 132 55 chr1 39798824 39798932 -242394732 - L2 LINE L2 -120 3152 3054 768 168 0 8 chr1 39798932 39799063 -242394601 - FLAM_C SINE Alu -2 131 2 418 312 132 55 chr1 39799063 39799318 -242394346 - L2 LINE L2 -218 3054 2742 207 0 0 0 chr1 39800978 39801001 -242392663 + (A)n Simple_repeat Simple_repeat 1 23 0 1312 241 126 0 chr1 39801965 39802330 -242391334 - LTR16A LTR ERVL -6 444 34 287 248 111 8 chr1 39802511 39802628 -242391036 - MIR SINE MIR -6 256 128 1926 164 13 0 chr1 39802903 39803207 -242390457 - AluJb SINE Alu -4 308 1 540 0 0 0 chr1 39803747 39803807 -242389857 + (CA)n Simple_repeat Simple_repeat 2 61 0 212 285 102 51 chr1 39804652 39804789 -242388875 - MIR SINE MIR -53 209 66 337 307 32 109 chr1 39804897 39805087 -242388577 - L2 LINE L2 -2 3270 3108 2168 99 6 78 chr1 39805087 39805420 -242388244 + AluSx SINE Alu 1 309 -3 337 307 32 109 chr1 39805420 39805512 -242388152 - L2 LINE L2 -164 3108 3010 1265 117 16 21 chr1 39805513 39805701 -242387963 + AluSg/x SINE Alu 108 294 -18 2489 91 0 0 chr1 39805745 39806054 -242387610 + AluSg SINE Alu 1 309 -1 237 284 26 86 chr1 39806070 39806186 -242387478 - L2 LINE L2 -218 3054 2946 975 322 80 5 chr1 39806265 39806703 -242386961 - L2 LINE L2 -519 2795 2325 2262 110 0 10 chr1 39807784 39808093 -242385571 - AluSx SINE Alu -6 306 1 734 154 73 0 chr1 39808147 39808270 -242385394 - FLAM_C SINE Alu 0 133 2 1666 167 17 14 chr1 39808522 39808810 -242384854 + AluJo SINE Alu 1 289 -23 2189 123 10 3 chr1 39809223 39809531 -242384133 + AluSx SINE Alu 1 310 -2 2260 108 7 0 chr1 39810251 39810548 -242383116 + AluSx SINE Alu 1 299 -13 2195 122 7 3 chr1 39810763 39811066 -242382598 + AluSx SINE Alu 1 304 -8 22 56 0 0 chr1 39811662 39811698 -242381966 + AT_rich Low_complexity Low_complexity 1 36 0 251 330 43 11 chr1 39812460 39812554 -242381110 + MIR SINE MIR 2 98 -164 243 0 0 0 chr1 39812939 39812966 -242380698 + (TA)n Simple_repeat Simple_repeat 1 27 0 2313 101 0 0 chr1 39813626 39813924 -242379740 - AluSg SINE Alu -12 298 1 24 67 0 0 chr1 39814443 39814488 -242379176 + AT_rich Low_complexity Low_complexity 1 45 0 405 197 13 13 chr1 39814491 39814566 -242379098 + Tigger5 DNA MER2_type 4 78 -2245 234 189 0 0 chr1 39814566 39814603 -242379061 - Tigger5 DNA MER2_type -3 2320 2284 351 200 0 0 chr1 39814614 39814674 -242378990 + Tigger5 DNA MER2_type 2264 2323 0 578 242 112 33 chr1 39814684 39814899 -242378765 - MIR SINE MIR -18 244 13 2343 109 0 0 chr1 39815240 39815544 -242378120 - AluSx SINE Alu -8 304 1 375 327 26 7 chr1 39815736 39815889 -242377775 + L3 LINE CR1 690 845 -732 366 264 37 61 chr1 39815896 39816059 -242377605 + L1ME4a LINE L1 5788 5946 -175 1966 114 18 0 chr1 39816166 39816439 -242377225 - AluSq SINE Alu -33 280 3 2479 74 0 7 chr1 39816518 39816827 -242376837 + AluSc SINE Alu 1 307 -2 1273 134 10 5 chr1 39816827 39817021 -242376643 + AluJo SINE Alu 2 196 -116 617 197 85 37 chr1 39817076 39817198 -242376466 + MIR SINE MIR 48 184 -78 2015 105 7 62 chr1 39817198 39817503 -242376161 - AluSx SINE Alu -23 289 2 617 197 85 37 chr1 39817503 39817568 -242376096 + MIR SINE MIR 184 244 -18 1899 102 3 122 chr1 39817569 39817912 -242375752 - AluY SINE Alu -9 302 1 1591 204 14 0 chr1 39818453 39818747 -242374917 - AluJb SINE Alu -14 298 1 3925 144 67 22 chr1 39818809 39819138 -242374526 - L1MB2 LINE L1 -2 6169 5856 1709 163 46 7 chr1 39819138 39819421 -242374243 - AluJb SINE Alu -18 294 1 3925 144 67 22 chr1 39819421 39819638 -242374026 - L1MB2 LINE L1 -315 5856 5650 1953 85 12 8 chr1 39819638 39819896 -242373768 - AluSq SINE Alu -12 301 43 3925 144 67 22 chr1 39819896 39820110 -242373554 - L1MB2 LINE L1 -521 5650 5374 464 211 61 9 chr1 39820511 39820625 -242373039 - L2 LINE L2 0 3313 3194 199 234 31 16 chr1 39820671 39820735 -242372929 - MIR SINE MIR -10 252 188 2140 85 13 23 chr1 39820765 39821070 -242372594 - AluSx SINE Alu -10 302 1 1798 170 13 10 chr1 39821212 39821523 -242372141 - AluJb SINE Alu 0 312 1 2654 46 0 0 chr1 39821866 39822168 -242371496 + AluY SINE Alu 1 302 -9 2428 81 7 3 chr1 39823643 39823950 -242369714 - AluSg SINE Alu -2 308 1 805 119 0 32 chr1 39825037 39825163 -242368501 + FLAM_C SINE Alu 2 123 -10 198 0 0 0 chr1 39825174 39825196 -242368468 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2090 135 30 0 chr1 39825222 39825518 -242368146 - AluSx SINE Alu -7 305 1 24 53 0 0 chr1 39825777 39825815 -242367849 + AT_rich Low_complexity Low_complexity 1 38 0 309 242 0 0 chr1 39826086 39826177 -242367487 + CT-rich Low_complexity Low_complexity 1 91 0 917 246 150 24 chr1 39826647 39827115 -242366549 + L1MC/D LINE L1 5291 5817 -1991 2322 117 0 0 chr1 39827123 39827430 -242366234 + AluSg SINE Alu 1 307 -3 935 261 14 0 chr1 39827457 39827672 -242365992 + MIR SINE MIR 28 245 -17 1837 158 7 10 chr1 39827913 39828216 -242365448 - AluJo SINE Alu -10 302 1 2075 109 0 7 chr1 39829171 39829445 -242364219 - AluSx SINE Alu -13 299 28 1653 174 3 30 chr1 39829929 39830092 -242363572 - AluJb SINE Alu -22 290 137 2337 98 0 20 chr1 39830092 39830398 -242363266 - AluSx SINE Alu -12 300 1 1653 174 3 30 chr1 39830398 39830532 -242363132 - AluJb SINE Alu -175 137 1 1744 160 18 7 chr1 39830534 39830815 -242362849 - AluJo SINE Alu -12 300 17 390 377 10 5 chr1 39831615 39831814 -242361850 + L2 LINE L2 2630 2829 -485 343 272 192 90 chr1 39831858 39832181 -242361483 + L2 LINE L2 2917 3272 0 264 273 210 21 chr1 39832331 39832474 -242361190 + MIR SINE MIR 83 252 -10 927 178 0 41 chr1 39832989 39833158 -242360506 - AluJb SINE Alu -4 308 147 2277 104 0 13 chr1 39833188 39833486 -242360178 + AluSq SINE Alu 1 294 -19 253 313 70 50 chr1 39833560 39833624 -242360040 - MIR SINE MIR -56 206 145 774 179 8 15 chr1 39833624 39833758 -242359906 - FLAM_A SINE Alu 0 133 1 253 313 70 50 chr1 39833758 39833894 -242359770 - MIR SINE MIR -117 145 2 290 241 72 0 chr1 39833984 39834067 -242359597 - L2 LINE L2 0 3272 3184 202 293 143 23 chr1 39834307 39834440 -242359224 + L2 LINE L2 3164 3312 -1 2416 99 0 0 chr1 39834655 39834957 -242358707 - AluSg SINE Alu -8 302 1 366 301 114 8 chr1 39836191 39836314 -242357350 + MER5A DNA MER1_type 1 136 -53 482 187 77 0 chr1 39836315 39836406 -242357258 - Tigger7 DNA MER2_type 0 2587 2490 * 550 122 12 0 chr1 39836405 39836487 -242357177 - Tigger7 DNA MER2_type -2220 267 185 1920 158 3 22 chr1 39838608 39838925 -242354739 - AluJb SINE Alu -1 311 1 1695 187 57 82 chr1 39840311 39840820 -242352844 + L1MC5 LINE L1 6957 7452 -509 2338 100 3 3 chr1 39840820 39841120 -242352544 - AluSx SINE Alu -12 300 1 1695 187 57 82 chr1 39841120 39841187 -242352477 + L1MC5 LINE L1 7452 7519 -442 417 228 6 11 chr1 39841198 39841274 -242352390 + (TA)n Simple_repeat Simple_repeat 2 77 -103 2359 85 3 0 chr1 39841274 39841569 -242352095 - AluSp SINE Alu -17 296 1 417 228 6 11 chr1 39841569 39841578 -242352086 + (TA)n Simple_repeat Simple_repeat 77 85 -95 2228 105 27 0 chr1 39841578 39841872 -242351792 - AluSq SINE Alu -11 302 1 417 228 6 11 chr1 39841872 39841965 -242351699 + (TA)n Simple_repeat Simple_repeat 85 180 0 889 199 141 32 chr1 39842070 39842277 -242351387 + L1MC5 LINE L1 7610 7856 -105 2099 134 55 6 chr1 39842277 39842621 -242351043 + MER46B DNA MER2_type 1 236 0 889 199 141 32 chr1 39842621 39842690 -242350974 + L1MC5 LINE L1 7856 7916 -45 2356 102 0 0 chr1 39842913 39843206 -242350458 + AluSg SINE Alu 1 293 -17 1534 132 36 64 chr1 39843237 39843517 -242350147 - AluJb SINE Alu -16 296 25 846 218 73 73 chr1 39843709 39844067 -242349597 - MER96B DNA MER1_type? -57 360 3 233 96 0 0 chr1 39845244 39845296 -242348368 - LTR66 LTR ERVL -165 445 394 234 231 0 0 chr1 39845304 39845356 -242348308 - L1MC4 LINE L1 -1339 6703 6652 2247 72 7 46 chr1 39845366 39845673 -242347991 - AluSx SINE Alu -17 295 1 881 204 0 0 chr1 39845694 39845851 -242347813 + FRAM SINE Alu 1 157 -9 2292 107 3 3 chr1 39846022 39846330 -242347334 - AluSg SINE Alu -2 308 1 587 234 40 88 chr1 39846363 39846589 -242347075 + LTR33 LTR ERVL 1 215 -306 522 219 9 35 chr1 39846604 39846718 -242346946 - MER81 DNA DNA -1 113 3 347 266 73 8 chr1 39846969 39847093 -242346571 - MIR SINE MIR -8 254 123 667 156 0 209 chr1 39847340 39847490 -242346174 - MER5A DNA MER1_type -6 183 94 1684 139 12 0 chr1 39847490 39847734 -242345930 - AluJb SINE Alu -61 251 5 667 156 0 209 chr1 39847734 39847808 -242345856 - MER5A DNA MER1_type -95 94 6 899 134 67 86 chr1 39848059 39848176 -242345488 - L1MB2 LINE L1 -3 6168 6055 2264 114 0 16 chr1 39848176 39848492 -242345172 - AluSq SINE Alu -2 311 1 899 134 67 86 chr1 39848492 39848583 -242345081 - L1MB2 LINE L1 -116 6055 5964 2217 117 0 7 chr1 39848881 39849181 -242344483 + AluSx SINE Alu 1 298 -14 2101 111 3 29 chr1 39849826 39850132 -242343532 + AluSx SINE Alu 1 298 -14 534 86 37 12 chr1 39850251 39850332 -242343332 + AluS SINE Alu 6 88 -224 1366 137 0 0 chr1 39850417 39850607 -242343057 + AluSg/x SINE Alu 99 288 -24 2171 114 0 3 chr1 39850617 39850924 -242342740 + AluSx SINE Alu 3 308 -4 1555 169 32 14 chr1 39850958 39851237 -242342427 + AluJo SINE Alu 1 284 -28 197 229 0 0 chr1 39851254 39851295 -242342369 + L2 LINE L2 3263 3306 -7 2175 108 0 3 chr1 39851295 39851600 -242342064 + AluSg1 SINE Alu 1 304 -5 572 314 108 58 chr1 39851764 39852597 -242341067 - L2 LINE L2 -18 3254 2397 2483 55 7 0 chr1 39852827 39853135 -242340529 - AluY SINE Alu -1 310 1 1093 81 0 0 chr1 39853135 39853271 -242340393 - AluSq/x SINE Alu -177 136 1 193 265 200 41 chr1 39853793 39853963 -242339701 - L2 LINE L2 -4 3309 3113 668 242 108 139 chr1 39854064 39854195 -242339469 + MLT1H LTR MaLR 1 134 -415 1629 168 4 4 chr1 39854195 39854475 -242339189 + AluJb SINE Alu 1 280 -32 668 242 108 139 chr1 39854475 39854528 -242339136 + MLT1H LTR MaLR 134 187 -362 1085 152 0 0 chr1 39854528 39854693 -242338971 + FRAM SINE Alu 2 166 0 668 242 108 139 chr1 39854693 39854780 -242338884 + MLT1H LTR MaLR 187 275 -274 2302 87 3 0 chr1 39854780 39855078 -242338586 - AluSp SINE Alu -14 299 1 668 242 108 139 chr1 39855078 39855290 -242338374 + MLT1H LTR MaLR 275 469 -80 2257 94 0 0 chr1 39855290 39855587 -242338077 + AluSx SINE Alu 1 297 -15 668 242 108 139 chr1 39855587 39855662 -242338002 + MLT1H LTR MaLR 469 545 -4 594 272 36 49 chr1 39855667 39855891 -242337773 - MIR SINE MIR -22 240 20 1806 148 34 0 chr1 39856247 39856544 -242337120 - AluJb SINE Alu -5 307 1 559 215 30 0 chr1 39856550 39856685 -242336979 - L1MA3 LINE L1 0 6305 6167 778 241 0 0 chr1 39856763 39856937 -242336727 - AluJb SINE Alu 0 310 137 924 118 0 0 chr1 39856977 39857104 -242336560 + FLAM_C SINE Alu 1 127 -6 1592 254 64 39 chr1 39857104 39857519 -242336145 - L1MCc LINE L1 -4360 2762 2359 2198 105 0 0 chr1 39857519 39857825 -242335839 + AluSx SINE Alu 1 306 -6 1592 254 64 39 chr1 39857825 39858805 -242334859 - L1MCc LINE L1 -4763 2359 1129 1317 158 11 34 chr1 39858903 39859147 -242334517 + AluJo SINE Alu 52 291 -21 1998 134 7 0 chr1 39859147 39859452 -242334212 + AluSx SINE Alu 1 307 -5 1317 158 11 34 chr1 39859452 39859473 -242334191 + AluJo SINE Alu 291 311 -1 2064 138 0 0 chr1 39859680 39859991 -242333673 - AluSx SINE Alu -1 311 1 2181 110 3 0 chr1 39860001 39860311 -242333353 - AluSx SINE Alu -1 311 1 446 208 180 118 chr1 39860782 39861027 -242332637 + MIR SINE MIR 2 261 -1 1835 143 3 3 chr1 39861100 39861393 -242332271 + AluJb SINE Alu 1 293 -19 647 274 169 54 chr1 39861862 39862176 -242331488 + HAL1 LINE L1 16 292 -2215 2327 38 0 51 chr1 39862176 39862489 -242331175 + AluY SINE Alu 1 297 -14 647 274 169 54 chr1 39862489 39862788 -242330876 + HAL1 LINE L1 292 700 -1807 439 295 13 0 chr1 39862819 39862975 -242330689 + HAL1 LINE L1 769 926 -1581 1254 231 22 123 chr1 39862983 39863324 -242330340 + L2 LINE L2 2010 2384 -930 1840 103 4 18 chr1 39863324 39863596 -242330068 + AluSx SINE Alu 1 268 -44 1254 231 22 123 chr1 39863596 39863609 -242330055 + L2 LINE L2 2384 2397 -917 180 0 0 0 chr1 39863609 39863629 -242330035 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1254 231 22 123 chr1 39863629 39863715 -242329949 + L2 LINE L2 2397 2398 -916 2172 93 0 7 chr1 39863715 39864005 -242329659 - AluSg SINE Alu -22 288 1 1254 231 22 123 chr1 39864005 39864056 -242329608 + L2 LINE L2 2398 2453 -861 1329 254 31 25 chr1 39864082 39864440 -242329224 - LTR16C LTR ERVL -49 442 83 442 299 169 5 chr1 39864456 39864640 -242329024 + L2 LINE L2 2447 2660 -654 447 88 15 15 chr1 39864644 39864712 -242328952 - MLT1C LTR MaLR -5 462 395 1044 83 0 0 chr1 39864713 39864845 -242328819 + AluSp SINE Alu 1 132 -181 1694 165 3 7 chr1 39864848 39865139 -242328525 + AluSc SINE Alu 1 290 -19 1673 119 0 0 chr1 39865144 39865380 -242328284 + AluSq SINE Alu 1 236 -77 578 285 127 100 chr1 39865524 39866149 -242327515 - L1M4 LINE L1 -949 5197 4590 2099 114 3 0 chr1 39866149 39866456 -242327208 - AluSp SINE Alu -4 309 2 578 285 127 100 chr1 39866456 39866661 -242327003 - L1M4 LINE L1 -1556 4590 4337 2261 96 0 0 chr1 39866661 39866964 -242326700 - AluSx SINE Alu -9 303 1 578 285 127 100 chr1 39866964 39867072 -242326592 - L1M4 LINE L1 -1809 4337 4233 213 39 0 0 chr1 39867073 39867099 -242326565 + (T)n Simple_repeat Simple_repeat 1 26 0 1305 170 9 4 chr1 39867104 39867334 -242326330 - AluJb SINE Alu -81 231 1 195 42 0 0 chr1 39867337 39867361 -242326303 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1091 171 19 24 chr1 39867389 39867594 -242326070 - AluJo SINE Alu -25 287 84 2296 53 0 0 chr1 39867800 39868082 -242325582 - AluY SINE Alu -29 282 1 2129 117 0 16 chr1 39868592 39868909 -242324755 - AluSx SINE Alu 0 312 1 875 188 24 0 chr1 39868911 39869076 -242324588 - AluJo/FRAM SINE Alu -10 302 134 2175 112 0 0 chr1 39869076 39869381 -242324283 - AluSx SINE Alu -7 305 1 2342 87 0 0 chr1 39869383 39869695 -242323969 - AluSx SINE Alu 0 312 1 1857 157 3 3 chr1 39869707 39870001 -242323663 - AluSx SINE Alu -18 294 1 243 358 0 0 chr1 39870111 39870206 -242323458 + CT-rich Low_complexity Low_complexity 3 97 0 2519 221 20 42 chr1 39870297 39870417 -242323247 - MLT1G LTR MaLR 0 590 469 2173 115 0 10 chr1 39870417 39870730 -242322934 + AluSg SINE Alu 1 310 0 2519 221 20 42 chr1 39870730 39870971 -242322693 - MLT1G LTR MaLR -121 469 245 2186 88 3 0 chr1 39870971 39871267 -242322397 - AluSp SINE Alu -15 298 2 2519 221 20 42 chr1 39871267 39871498 -242322166 - MLT1G LTR MaLR -345 245 10 597 271 25 93 chr1 39871510 39871831 -242321833 + L2 LINE L2 3015 3313 0 293 311 71 20 chr1 39871854 39872050 -242321614 - L3 LINE CR1 -7 1570 1365 1169 132 4 6 chr1 39872052 39872311 -242321353 + AluJb SINE Alu 1 311 -1 540 271 40 93 chr1 39872382 39872629 -242321035 - MIR SINE MIR -12 250 17 513 116 95 175 chr1 39872867 39872981 -242320683 + L1MB5 LINE L1 4103 4224 -1922 3548 68 0 2 chr1 39872981 39873437 -242320227 - L1PA8 LINE L1 -4 6168 5714 1850 152 0 7 chr1 39873437 39873734 -242319930 - AluJb SINE Alu -17 295 1 513 116 95 175 chr1 39873734 39873776 -242319888 + L1MB5 LINE L1 4223 4245 -1901 1952 115 0 42 chr1 39873776 39874089 -242319575 + AluSg SINE Alu 1 300 -10 513 116 95 175 chr1 39874089 39874119 -242319545 + L1MB5 LINE L1 4245 4276 -1870 274 105 0 0 chr1 39874119 39874157 -242319507 - tRNA-Glu-GAG tRNA tRNA -37 38 1 4809 159 29 75 chr1 39874166 39874342 -242319322 + L1MB5 LINE L1 4265 4448 -1726 2240 88 0 0 chr1 39874342 39874639 -242319025 - AluY SINE Alu -13 298 2 4809 159 29 75 chr1 39874639 39874817 -242318847 + L1MB5 LINE L1 4448 4633 -1541 2169 94 6 28 chr1 39874817 39875136 -242318528 + AluSx SINE Alu 1 312 0 480 35 0 0 chr1 39875137 39875195 -242318469 + (CA)n Simple_repeat Simple_repeat 1 58 0 4809 159 29 75 chr1 39875195 39875449 -242318215 + L1MB5 LINE L1 4633 4897 -1277 2149 103 7 0 chr1 39875449 39875749 -242317915 - AluSx SINE Alu -9 303 2 4809 159 29 75 chr1 39875749 39875772 -242317892 + L1MB5 LINE L1 4897 4920 -1254 2096 113 33 0 chr1 39875772 39876074 -242317590 - AluSq SINE Alu 0 313 2 4809 159 29 75 chr1 39876074 39876748 -242316916 + L1MB5 LINE L1 4920 5485 -689 1684 155 0 62 chr1 39876748 39877071 -242316593 + AluJb SINE Alu 1 303 -9 4809 159 29 75 chr1 39877071 39877399 -242316265 + L1MB5 LINE L1 5485 5827 -347 857 112 0 8 chr1 39877400 39877525 -242316139 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 39878122 39878403 -242315261 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 39878615 39878707 -242314957 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 39878776 39878808 -242314856 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 39879009 39879330 -242314334 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 39879407 39879642 -242314022 - L2 LINE L2 -2853 461 218 2547 48 0 0 chr1 39879955 39880264 -242313400 - AluY SINE Alu -2 309 1 2324 67 0 0 chr1 39880423 39880720 -242312944 + AluY SINE Alu 1 297 -14 2501 42 0 13 chr1 39880778 39881089 -242312575 + AluY SINE Alu 1 307 -4 368 271 57 8 chr1 39881200 39881322 -242312342 + MIR SINE MIR 100 227 -35 2347 142 5 15 chr1 39881419 39881813 -242311851 + MLT1B LTR MaLR 1 390 0 2186 79 7 3 chr1 39882060 39882364 -242311300 - AluSx SINE Alu -7 305 1 30 97 0 0 chr1 39882880 39882973 -242310691 + GC_rich Low_complexity Low_complexity 1 93 0 234 0 0 0 chr1 39882996 39883022 -242310642 + (CGG)n Simple_repeat Simple_repeat 2 27 0 29 47 0 0 chr1 39883073 39883116 -242310548 + GC_rich Low_complexity Low_complexity 1 43 0 225 0 0 0 chr1 39883164 39883189 -242310475 + (CGG)n Simple_repeat Simple_repeat 3 27 0 25 51 0 0 chr1 39883203 39883242 -242310422 + GC_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chr1 39883280 39883323 -242310341 + GC_rich Low_complexity Low_complexity 1 43 0 519 312 35 6 chr1 39884538 39884711 -242308953 + MIR SINE MIR 75 252 -10 400 279 81 47 chr1 39885382 39885554 -242308110 - MIR SINE MIR -50 212 35 1315 152 76 76 chr1 39885683 39885985 -242307679 + AluSq SINE Alu 9 310 -3 2012 101 44 0 chr1 39886017 39886313 -242307351 + AluSx SINE Alu 1 309 -3 879 233 63 36 chr1 39886372 39886425 -242307239 - MIR SINE MIR -1 261 211 2246 81 10 0 chr1 39886425 39886723 -242306941 - AluSg1 SINE Alu -8 301 1 879 233 63 36 chr1 39886723 39886922 -242306742 - MIR SINE MIR -51 211 2 295 80 26 0 chr1 39886966 39887013 -242306651 + MLT1A1 LTR MaLR 270 344 -46 210 71 0 0 chr1 39887017 39887045 -242306619 + (A)n Simple_repeat Simple_repeat 1 28 0 256 346 63 16 chr1 39887274 39887401 -242306263 + MIR3 SINE MIR 14 146 -62 2047 124 3 0 chr1 39887418 39887717 -242305947 - AluSx SINE Alu -12 300 1 2322 81 0 0 chr1 39887953 39888251 -242305413 + AluY SINE Alu 1 298 -13 1759 132 49 23 chr1 39888300 39888604 -242305060 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 39888605 39888653 -242305011 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 39888653 39888928 -242304736 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 39888928 39888990 -242304674 + GA-rich Low_complexity Low_complexity 50 115 0 184 0 97 0 chr1 39889179 39889210 -242304454 + T-rich Low_complexity Low_complexity 2 35 0 1997 106 0 3 chr1 39889212 39889494 -242304170 - AluSg SINE Alu -29 281 1 2396 74 0 0 chr1 39889641 39889940 -242303724 - AluY SINE Alu -11 300 2 656 302 116 40 chr1 39889996 39890443 -242303221 + L2 LINE L2 2833 3313 0 257 303 247 0 chr1 39891682 39891844 -242301820 - MIR SINE MIR -14 248 47 834 228 50 0 chr1 39892418 39892598 -242301066 - MER5A DNA MER1_type 0 189 1 208 237 34 17 chr1 39892707 39892766 -242300898 - MIR SINE MIR -1 261 202 508 299 71 11 chr1 39892798 39892982 -242300682 - MIR SINE MIR -59 203 9 1964 132 7 13 chr1 39892986 39893290 -242300374 - AluSx SINE Alu -10 302 1 366 322 164 14 chr1 39893436 39893644 -242300020 - MIR SINE MIR -15 247 9 619 200 291 6 chr1 39894626 39894801 -242298863 - MIR SINE MIR -6 256 32 1935 118 0 30 chr1 39895164 39895484 -242298180 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 39897775 39897796 -242295868 + (T)n Simple_repeat Simple_repeat 1 21 0 372 103 0 0 chr1 39899073 39899131 -242294533 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 39900717 39900748 -242292916 + (CAG)n Simple_repeat Simple_repeat 2 32 0 182 336 109 17 chr1 39900921 39901040 -242292624 - L2 LINE L2 0 3272 3143 373 307 146 49 chr1 39901068 39901540 -242292124 - L2 LINE L2 -706 2608 2091 957 271 115 20 chr1 39903919 39904310 -242289354 - MLT1L LTR MaLR -62 553 126 225 224 158 43 chr1 39904378 39904506 -242289158 - MIR SINE MIR -47 161 21 308 216 145 2 chr1 39904830 39904925 -242288739 - L1M LINE L1 -756 5410 5318 1442 157 28 39 chr1 39904928 39905214 -242288450 - AluJb SINE Alu -18 294 12 664 209 135 35 chr1 39905232 39905462 -242288202 - L1M4 LINE L1 -813 5333 5081 365 236 28 57 chr1 39905651 39905757 -242287907 - L2 LINE L2 -1 3312 3210 469 279 85 0 chr1 39906464 39906593 -242287071 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 39906630 39906658 -242287006 + AT_rich Low_complexity Low_complexity 1 28 0 299 215 21 65 chr1 39906729 39906822 -242286842 - L2 LINE L2 -1 3312 3224 184 342 25 42 chr1 39906966 39907086 -242286578 - L2 LINE L2 -338 2976 2859 216 333 51 0 chr1 39907116 39907194 -242286470 - L2 LINE L2 -528 2786 2705 224 272 212 52 chr1 39909216 39909697 -242283967 - L2 LINE L2 -1242 2072 1515 180 0 0 0 chr1 39909698 39909718 -242283946 + (T)n Simple_repeat Simple_repeat 1 20 0 2003 107 23 7 chr1 39909727 39910026 -242283638 - AluSq SINE Alu -9 304 1 30 69 0 0 chr1 39910039 39910097 -242283567 + AT_rich Low_complexity Low_complexity 1 58 0 815 116 0 103 chr1 39910170 39910325 -242283339 - AluSg/x SINE Alu -17 295 157 1436 118 0 10 chr1 39910325 39910529 -242283135 - AluSq SINE Alu -111 202 1 2171 111 0 0 chr1 39910540 39910837 -242282827 - AluSx SINE Alu -15 297 1 246 191 44 0 chr1 39911060 39911128 -242282536 - L1MC/D LINE L1 -2368 5440 5370 1847 171 0 0 chr1 39911780 39912090 -242281574 - AluJb SINE Alu -2 310 1 1648 163 7 29 chr1 39912094 39912400 -242281264 - AluJo SINE Alu -3 309 11 553 243 201 0 chr1 39912516 39912660 -242281004 + MER5A DNA MER1_type 17 189 0 302 250 0 71 chr1 39913727 39913839 -242279825 - MIR3 SINE MIR -92 116 13 211 294 78 88 chr1 39915020 39915122 -242278542 - L2 LINE L2 -21 3292 3192 505 238 143 18 chr1 39916121 39916230 -242277434 + MER5A DNA MER1_type 1 140 -49 2321 78 3 0 chr1 39916230 39916524 -242277140 - AluSp SINE Alu -18 295 1 505 238 143 18 chr1 39916524 39916582 -242277082 + MER5A DNA MER1_type 140 189 0 1664 112 80 25 chr1 39916597 39916883 -242276781 - AluSx SINE Alu -10 302 1 1473 269 57 22 chr1 39917234 39917688 -242275976 - L2 LINE L2 -6 3307 2838 703 152 87 4 chr1 39917776 39917962 -242275702 + AluJb SINE Alu 12 291 -21 1744 178 27 23 chr1 39917962 39918485 -242275179 - L1MB7 LINE L1 -4 6180 5606 2315 68 3 0 chr1 39918485 39918779 -242274885 - AluY SINE Alu -16 295 1 1744 178 27 23 chr1 39918779 39918873 -242274791 - L1MB7 LINE L1 -578 5606 5514 3719 146 22 0 chr1 39919100 39919743 -242273921 - L1MB3 LINE L1 0 6183 5506 368 282 16 51 chr1 39920025 39920221 -242273443 - MIR SINE MIR -63 145 5 192 257 115 53 chr1 39920546 39920659 -242273005 - MIR SINE MIR 0 262 143 1842 136 3 3 chr1 39920671 39920958 -242272706 + AluSq SINE Alu 1 287 -26 413 129 0 0 chr1 39921103 39921165 -242272499 + Alu SINE Alu 240 301 -11 30 45 0 0 chr1 39921543 39921587 -242272077 + AT_rich Low_complexity Low_complexity 1 44 0 1993 121 17 0 chr1 39921697 39921995 -242271669 + AluSx SINE Alu 1 303 -9 2240 88 0 23 chr1 39922082 39922389 -242271275 + AluSq SINE Alu 1 300 -13 2078 119 0 0 chr1 39922463 39922756 -242270908 + AluSg SINE Alu 1 293 -17 1586 176 36 0 chr1 39922943 39923244 -242270420 + AluJb SINE Alu 1 312 0 1268 213 20 38 chr1 39923260 39923558 -242270106 + L1ME1 LINE L1 4389 4682 -1464 378 0 0 0 chr1 39923558 39923600 -242270064 + (CA)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 39923600 39923648 -242270016 + L1ME1 LINE L1 4682 4729 -1417 1539 217 104 75 chr1 39923657 39924109 -242269555 + MLT1E LTR MaLR 101 538 -55 2259 90 0 37 chr1 39924109 39924294 -242269370 - AluSx SINE Alu -2 310 120 198 0 0 0 chr1 39924294 39924316 -242269348 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1860 118 0 50 chr1 39924316 39924613 -242269051 - AluSg SINE Alu -28 282 1 2259 90 0 37 chr1 39924613 39924748 -242268916 - AluSx SINE Alu -190 122 1 1539 217 104 75 chr1 39924748 39924796 -242268868 + MLT1E LTR MaLR 538 590 -3 1258 221 54 4 chr1 39924797 39925073 -242268591 + L1ME1 LINE L1 4720 5009 -1137 1323 141 74 50 chr1 39925073 39925371 -242268293 + AluJo SINE Alu 2 306 -6 701 188 7 32 chr1 39925377 39925531 -242268133 + L1ME1 LINE L1 5676 5825 -341 810 266 25 54 chr1 39925580 39925894 -242267770 + L1ME1 LINE L1 5819 6123 -43 2174 77 27 0 chr1 39925894 39926191 -242267473 - AluSq SINE Alu -8 305 1 810 266 25 54 chr1 39926191 39926230 -242267434 + L1ME1 LINE L1 6123 6162 -4 245 348 26 9 chr1 39926472 39926587 -242267077 - L2 LINE L2 -539 2775 2659 45 19 0 0 chr1 39926622 39926674 -242266990 + AT_rich Low_complexity Low_complexity 1 52 0 195 253 172 0 chr1 39926796 39926858 -242266806 - MIR SINE MIR -105 103 42 2442 55 3 0 chr1 39926886 39927196 -242266468 - AluY SINE Alu 0 311 1 698 243 100 36 chr1 39927457 39927873 -242265791 - L1ME2 LINE L1 -207 5957 5401 2151 101 13 0 chr1 39927878 39928176 -242265488 + AluSx SINE Alu 1 302 -10 847 143 0 8 chr1 39928205 39928331 -242265333 + FLAM_C SINE Alu 3 127 -16 239 151 0 57 chr1 39928381 39928434 -242265230 + AluJo/FLAM SINE Alu 120 169 -133 2212 112 0 0 chr1 39928703 39929006 -242264658 - AluSx SINE Alu -9 303 1 1549 183 6 31 chr1 39929082 39929399 -242264265 - AluJo SINE Alu -1 311 3 270 56 0 0 chr1 39929419 39929455 -242264209 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 562 213 9 0 chr1 39929463 39929571 -242264093 - FLAM_A SINE Alu -32 110 2 13119 115 22 26 chr1 39930369 39930689 -242262975 + Tigger1 DNA MER2_type 4 324 -2094 1714 155 0 39 chr1 39930689 39930998 -242262666 - AluJb SINE Alu -15 297 1 13119 115 22 26 chr1 39930998 39931935 -242261729 + Tigger1 DNA MER2_type 324 1263 -1155 2131 114 0 0 chr1 39931935 39932233 -242261431 - AluSg SINE Alu -12 298 1 13119 115 22 26 chr1 39932233 39932776 -242260888 + Tigger1 DNA MER2_type 1263 1799 -619 2397 77 0 0 chr1 39932776 39933087 -242260577 - AluY SINE Alu 0 311 1 13119 115 22 26 chr1 39933087 39933309 -242260355 + Tigger1 DNA MER2_type 1799 2020 -398 1085 168 0 24 chr1 39933309 39933517 -242260147 - AluJo SINE Alu -17 295 93 320 354 78 39 chr1 39933778 39934035 -242259629 + L2 LINE L2 2825 3091 -181 1175 148 141 28 chr1 39934088 39934222 -242259442 + MER33 DNA MER1_type 1 118 -2467 2059 110 3 0 chr1 39934222 39934512 -242259152 - AluSg SINE Alu -19 291 1 1175 148 141 28 chr1 39934512 39934584 -242259080 + MER33 DNA MER1_type 118 180 -2405 2018 117 0 7 chr1 39934584 39934906 -242258758 - AluY SINE Alu 0 311 1 1175 148 141 28 chr1 39934906 39934989 -242258675 + MER33 DNA MER1_type 180 324 0 2218 102 7 0 chr1 39935689 39935994 -242257670 + AluSp SINE Alu 1 307 -6 1939 107 80 0 chr1 39935997 39936286 -242257378 + AluSx SINE Alu 1 312 0 237 258 68 68 chr1 39937322 39937454 -242256210 - L2 LINE L2 -8 3305 3174 677 249 74 19 chr1 39937561 39937859 -242255805 + L1ME1 LINE L1 5725 6052 -114 332 232 0 0 chr1 39937859 39937915 -242255749 - MER2 DNA MER2_type 0 345 290 467 144 39 19 chr1 39937931 39938035 -242255629 + L1MA5A LINE L1 6191 6296 -1 31 44 0 0 chr1 39938087 39938132 -242255532 + AT_rich Low_complexity Low_complexity 1 45 0 1193 105 13 110 chr1 39938218 39938290 -242255374 - MER2 DNA MER2_type -139 206 129 1236 62 152 62 chr1 39938290 39938355 -242255309 - MER30 DNA MER1_type 0 230 172 2203 106 0 6 chr1 39938355 39938666 -242254998 + AluSx SINE Alu 1 309 -3 1236 62 152 62 chr1 39938666 39938811 -242254853 - MER30 DNA MER1_type -58 172 1 1193 105 13 110 chr1 39938811 39938862 -242254802 - MER2 DNA MER2_type -216 129 75 806 171 0 0 chr1 39938862 39938985 -242254679 - FLAM_A SINE Alu -6 127 5 1193 105 13 110 chr1 39938985 39939088 -242254576 - MER2 DNA MER2_type -270 75 1 374 298 81 40 chr1 39939195 39939319 -242254345 + L2 LINE L2 3143 3271 -1 232 200 15 15 chr1 39939319 39939384 -242254280 + (CA)n Simple_repeat Simple_repeat 1 65 0 198 0 0 0 chr1 39940134 39940156 -242253508 + (TTAGG)n Simple_repeat Simple_repeat 2 23 0 301 268 99 63 chr1 39940278 39940420 -242253244 - L2 LINE L2 -1 3271 3125 219 204 0 0 chr1 39942953 39942997 -242250667 + (CCG)n Simple_repeat Simple_repeat 3 46 0 457 327 206 27 chr1 39943651 39944387 -242249277 + L2 LINE L2 1802 2669 -645 334 153 51 0 chr1 39944569 39944628 -242249036 - MER5A DNA MER1_type -1 188 127 2237 90 0 3 chr1 39944630 39944930 -242248734 + AluSx SINE Alu 1 299 -13 1759 132 49 23 chr1 39944979 39945283 -242248381 + AluJb SINE Alu 1 312 0 364 171 27 18 chr1 39945284 39945332 -242248332 + GA-rich Low_complexity Low_complexity 4 50 -65 1968 102 0 4 chr1 39945332 39945607 -242248057 + AluSg SINE Alu 35 308 -2 364 171 27 18 chr1 39945607 39945669 -242247995 + GA-rich Low_complexity Low_complexity 50 115 0 857 56 56 24 chr1 39945814 39945939 -242247725 - L1PA5 LINE L1 0 6154 6026 1280 92 0 0 chr1 39946043 39946207 -242247457 - AluSq SINE Alu -149 164 1 2868 166 39 48 chr1 39946208 39946879 -242246785 + L1MB5 LINE L1 4848 5497 -677 1684 155 0 62 chr1 39946879 39947202 -242246462 + AluJb SINE Alu 1 303 -9 2868 166 39 48 chr1 39947202 39947530 -242246134 + L1MB5 LINE L1 5497 5827 -347 857 112 0 8 chr1 39947531 39947656 -242246008 + FLAM_C SINE Alu 3 126 -17 2041 96 4 4 chr1 39948253 39948534 -242245130 - AluSx SINE Alu -11 301 21 222 359 0 22 chr1 39948746 39948838 -242244826 - MIR SINE MIR -152 110 21 203 156 0 0 chr1 39948907 39948939 -242244725 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2066 74 7 11 chr1 39949140 39949461 -242244203 - AluY SINE Alu 0 320 1 311 379 55 17 chr1 39949538 39949773 -242243891 - L2 LINE L2 -2853 461 218 2461 62 0 0 chr1 39950086 39950395 -242243269 - AluY SINE Alu -2 309 1 723 290 57 18 chr1 39950408 39950687 -242242977 - L2 LINE L2 -1124 2190 1901 238 200 25 38 chr1 39950854 39950934 -242242730 + L1MEd LINE L1 54 132 -5987 344 222 14 0 chr1 39951226 39951298 -242242366 + L1ME3A LINE L1 5486 5558 -563 1361 187 211 54 chr1 39951302 39951390 -242242274 + L1ME3A LINE L1 5628 5701 -469 2232 107 0 3 chr1 39951390 39951688 -242241976 - AluSx SINE Alu -15 297 1 1361 187 211 54 chr1 39951688 39952064 -242241600 + L1ME3A LINE L1 5701 6165 -5 1753 171 20 3 chr1 39953075 39953373 -242240291 + AluJo SINE Alu 1 303 -9 1416 183 95 0 chr1 39954390 39954664 -242239000 + AluJo SINE Alu 1 300 -12 304 322 35 0 chr1 39955052 39955139 -242238525 - L2 LINE L2 -14 3258 3169 431 65 52 52 chr1 39955316 39955393 -242238271 - L1PA5 LINE L1 -176 5978 5902 196 333 17 0 chr1 39955518 39955578 -242238086 - L2 LINE L2 -217 3055 2995 2250 107 0 0 chr1 39955712 39956012 -242237652 - AluSx SINE Alu -12 300 1 363 236 54 27 chr1 39956302 39956450 -242237214 + MER103 DNA DNA 1 152 -14 1312 154 27 32 chr1 39956499 39956719 -242236945 - MER20 DNA MER1_type 0 219 1 2347 103 0 0 chr1 39957353 39957663 -242236001 + AluSg SINE Alu 1 310 0 186 305 51 42 chr1 39957982 39958100 -242235564 + L2 LINE L2 3187 3305 -8 830 255 21 25 chr1 39958721 39958964 -242234700 - L2 LINE L2 0 3313 3072 231 309 0 0 chr1 39958985 39959069 -242234595 + L1MC4 LINE L1 6613 6696 -1346 2418 106 0 0 chr1 39959176 39959487 -242234177 + AluSx SINE Alu 1 311 -1 390 42 0 0 chr1 39959487 39959535 -242234129 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2394 221 65 169 chr1 39959538 39960143 -242233521 - L2 LINE L2 -414 2900 2234 756 208 0 8 chr1 39960143 39960273 -242233391 + AluJo/FLAM SINE Alu 4 132 -180 2071 128 0 20 chr1 39960273 39960578 -242233086 + AluSg SINE Alu 1 299 -11 422 111 0 32 chr1 39960580 39960643 -242233021 + Alu SINE Alu 238 298 -14 2394 221 65 169 chr1 39960643 39961179 -242232485 - L2 LINE L2 -1080 2234 1730 2162 131 3 0 chr1 39961179 39961484 -242232180 - AluSx SINE Alu -6 306 1 2394 221 65 169 chr1 39961484 39961627 -242232037 - L2 LINE L2 -1584 1730 1574 382 236 49 57 chr1 39961710 39961833 -242231831 - MIR SINE MIR -62 200 79 * 397 298 13 53 chr1 39961828 39961979 -242231685 + MIR SINE MIR 62 206 -56 1868 122 45 14 chr1 39962721 39963008 -242230656 - AluSx SINE Alu -16 296 1 2262 102 7 0 chr1 39963087 39963382 -242230282 - AluSp SINE Alu -16 297 1 837 97 14 41 chr1 39963882 39964027 -242229637 + L1MA4 LINE L1 6155 6295 -5 1963 119 3 66 chr1 39964081 39964248 -242229416 - AluSx SINE Alu -12 300 161 2128 113 0 16 chr1 39964248 39964559 -242229105 - AluSx SINE Alu -6 306 1 1963 119 3 66 chr1 39964559 39964710 -242228954 - AluSx SINE Alu -151 161 2 22 35 0 0 chr1 39964954 39964983 -242228681 + AT_rich Low_complexity Low_complexity 1 29 0 1873 204 74 11 chr1 39965296 39965342 -242228322 - L1MB4 LINE L1 -1 6179 6137 1633 176 14 30 chr1 39965342 39965637 -242228027 + AluJo SINE Alu 1 290 -22 1873 204 74 11 chr1 39965637 39966076 -242227588 - L1MB4 LINE L1 -43 6137 5667 816 232 27 18 chr1 39966950 39967170 -242226494 + MIR SINE MIR 31 252 -10 240 232 313 20 chr1 39967262 39967361 -242226303 + L2 LINE L2 3181 3308 -5 2214 108 0 13 chr1 39967748 39968055 -242225609 + AluSg1 SINE Alu 1 303 -6 2177 123 3 3 chr1 39968066 39968368 -242225296 + AluSx SINE Alu 1 302 -10 279 93 0 0 chr1 39968623 39968666 -242224998 - AluJo SINE Alu 0 302 260 1250 171 34 0 chr1 39968666 39968871 -242224793 - AluJo SINE Alu -100 212 1 2292 103 7 0 chr1 39969138 39969439 -242224225 + AluSq SINE Alu 1 303 -10 279 93 0 0 chr1 39969696 39969739 -242223925 - AluJo SINE Alu 0 302 260 1236 176 34 0 chr1 39969739 39969944 -242223720 - AluJo SINE Alu -100 212 1 1041 157 0 0 chr1 39970111 39970270 -242223394 - AluJo SINE Alu -69 243 85 2276 101 0 3 chr1 39970422 39970720 -242222944 - AluSq SINE Alu -16 297 1 255 250 0 0 chr1 39970991 39971035 -242222629 - MER5A DNA MER1_type -3 186 143 2251 70 26 42 chr1 39971453 39971766 -242221898 + AluSx SINE Alu 1 308 -4 1389 188 67 7 chr1 39971779 39972061 -242221603 + AluJo SINE Alu 3 301 -11 255 250 0 0 chr1 39972473 39972517 -242221147 - MER5A DNA MER1_type -3 186 143 2286 67 25 41 chr1 39972935 39973249 -242220415 + AluSx SINE Alu 1 309 -3 1667 153 64 7 chr1 39973262 39973543 -242220121 + AluJo SINE Alu 3 299 -13 30 45 0 0 chr1 39973921 39973965 -242219699 + AT_rich Low_complexity Low_complexity 1 44 0 2096 121 17 0 chr1 39974075 39974373 -242219291 + AluSx SINE Alu 1 303 -9 2205 100 36 0 chr1 39974460 39974761 -242218903 + AluSx SINE Alu 1 312 0 231 146 0 0 chr1 39975769 39975810 -242217854 + (TTC)n Simple_repeat Simple_repeat 2 42 0 2308 92 3 3 chr1 39976379 39976684 -242216980 + AluSc SINE Alu 1 305 -4 951 198 12 95 chr1 39977602 39977959 -242215705 - MLT1I LTR MaLR 0 409 14 1706 176 0 3 chr1 39978092 39978376 -242215288 - AluJo SINE Alu -29 283 1 1510 116 29 142 chr1 39978386 39978732 -242214932 - AluYb8 SINE Alu -6 312 6 2153 139 10 0 chr1 39978736 39979038 -242214626 - AluSx SINE Alu -7 305 1 320 352 16 16 chr1 39979305 39979433 -242214231 + L2 LINE L2 3182 3309 -4 419 250 128 33 chr1 39981318 39981498 -242212166 - MIR SINE MIR -49 213 17 2502 75 0 3 chr1 39981657 39981964 -242211700 - AluY SINE Alu -5 306 1 610 133 89 0 chr1 39982235 39982325 -242211339 + FLAM_A SINE Alu 4 101 -41 2180 103 7 0 chr1 39982340 39982631 -242211033 + AluSg SINE Alu 1 293 -17 2322 78 20 0 chr1 39982765 39983059 -242210605 - AluY SINE Alu -11 300 1 194 314 38 29 chr1 39983428 39983533 -242210131 - L2 LINE L2 -1654 1660 1555 289 365 55 7 chr1 39983744 39983889 -242209775 - L3 LINE CR1 -481 1096 945 1937 111 28 14 chr1 39984136 39984425 -242209239 - AluSq SINE Alu -20 293 1 234 91 0 0 chr1 39984499 39984532 -242209132 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 22 0 0 0 chr1 39984876 39984898 -242208766 + AT_rich Low_complexity Low_complexity 1 22 0 2723 207 52 90 chr1 39985087 39985506 -242208158 - L1ME3 LINE L1 -2 6160 5727 2214 70 0 4 chr1 39985506 39985777 -242207887 - AluY SINE Alu -41 270 1 2723 207 52 90 chr1 39985777 39986146 -242207518 - L1ME3 LINE L1 -435 5727 5346 2155 134 0 3 chr1 39986146 39986452 -242207212 - AluSx SINE Alu -7 305 1 1867 167 0 3 chr1 39986454 39986748 -242206916 - AluJo SINE Alu -19 293 1 2723 207 52 90 chr1 39986748 39986949 -242206715 - L1ME3 LINE L1 -817 5345 5138 1757 181 20 10 chr1 39986949 39987115 -242206549 - AluJo SINE Alu -10 302 139 183 42 0 0 chr1 39987115 39987139 -242206525 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2107 119 0 11 chr1 39987139 39987424 -242206240 - AluSx SINE Alu -30 282 1 1757 181 20 10 chr1 39987424 39987555 -242206109 - AluJo SINE Alu -172 140 1 2723 207 52 90 chr1 39987555 39987588 -242206076 - L1ME3 LINE L1 -1023 5139 5155 1616 161 4 4 chr1 39988038 39988311 -242205353 - AluJb SINE Alu -1 311 39 874 266 31 4 chr1 39988449 39988678 -242204986 + MIR SINE MIR 1 235 -27 190 237 129 21 chr1 39988729 39988822 -242204842 - L2 LINE L2 -21 3292 3190 924 163 0 0 chr1 39988916 39989051 -242204613 + AluJb SINE Alu 164 298 -14 2089 98 0 18 chr1 39989182 39989353 -242204311 - AluSx SINE Alu 0 304 139 2223 102 7 13 chr1 39989353 39989656 -242204008 - AluSx SINE Alu -11 301 1 2089 98 0 18 chr1 39989656 39989793 -242203871 - AluSx SINE Alu -165 139 1 1572 169 13 73 chr1 39989795 39990109 -242203555 - AluJo SINE Alu -17 295 1 267 103 0 0 chr1 39990992 39991031 -242202633 + (TA)n Simple_repeat Simple_repeat 2 40 0 810 169 15 42 chr1 39991343 39991587 -242202077 + MER1B DNA MER1_type 1 339 0 285 274 0 0 chr1 39991640 39991713 -242201951 + MIR SINE MIR 88 160 -102 2127 115 14 0 chr1 39991713 39992009 -242201655 + AluSx SINE Alu 1 300 -12 248 226 0 19 chr1 39992012 39992065 -242201599 + Tigger4(Zombi) DNA MER2_type 2679 2730 -1 2186 122 0 3 chr1 39992254 39992558 -242201106 - AluSq SINE Alu -10 303 1 260 237 0 26 chr1 39992725 39992801 -242200863 + L1PB4 LINE L1 6083 6156 0 21 0 0 0 chr1 39992820 39992841 -242200823 + AT_rich Low_complexity Low_complexity 1 21 0 1844 152 0 26 chr1 39993234 39993536 -242200128 - AluJb SINE Alu -18 294 1 221 334 98 64 chr1 39993568 39994388 -242199276 + L2 LINE L2 1218 2009 -1305 1817 155 3 39 chr1 39994388 39994697 -242198967 - AluSq SINE Alu -15 298 1 221 334 98 64 chr1 39994697 39994946 -242198718 + L2 LINE L2 2009 2248 -1066 967 255 163 17 chr1 39994946 39995303 -242198361 - MLT1I LTR MaLR 0 409 1 221 334 98 64 chr1 39995303 39995477 -242198187 + L2 LINE L2 2248 2504 -810 2349 73 3 0 chr1 39995506 39995793 -242197871 + AluY SINE Alu 1 288 -23 198 0 0 0 chr1 39995794 39995816 -242197848 + (TA)n Simple_repeat Simple_repeat 2 23 0 707 210 0 0 chr1 39995816 39995935 -242197729 - FLAM_C SINE Alu -14 119 1 264 216 0 0 chr1 39995937 39995988 -242197676 - L1ME1 LINE L1 -65 6101 6051 1292 98 13 94 chr1 39995988 39996087 -242197577 + MER2 DNA MER2_type 1 106 -239 868 173 0 0 chr1 39996087 39996214 -242197450 + FLAM_A SINE Alu 1 127 -6 1292 98 13 94 chr1 39996214 39996265 -242197399 + MER2 DNA MER2_type 106 130 -215 1315 62 152 62 chr1 39996265 39996410 -242197254 + MER30 DNA MER1_type 1 172 -58 2328 103 0 6 chr1 39996410 39996721 -242196943 - AluSx SINE Alu -3 309 1 1315 62 152 62 chr1 39996721 39996786 -242196878 + MER30 DNA MER1_type 172 230 0 1292 98 13 94 chr1 39996786 39996858 -242196806 + MER2 DNA MER2_type 130 206 -139 261 218 67 107 chr1 39996889 39997041 -242196623 + MER2 DNA MER2_type 130 272 -73 507 144 39 19 chr1 39997041 39997145 -242196519 - L1MA5A LINE L1 -1 6296 6191 261 218 67 107 chr1 39997145 39997217 -242196447 + MER2 DNA MER2_type 272 345 0 833 264 125 3 chr1 39997220 39997508 -242196156 - L1MD3 LINE L1 -1941 6054 5732 228 244 76 69 chr1 39997622 39997753 -242195911 + L2 LINE L2 3174 3305 -8 299 285 90 49 chr1 39998405 39998549 -242195115 - MIR3 SINE MIR -58 150 1 21 0 0 0 chr1 39998553 39998574 -242195090 + AT_rich Low_complexity Low_complexity 1 21 0 1765 174 0 13 chr1 39998586 39998890 -242194774 + AluJo SINE Alu 2 301 -11 2113 140 0 9 chr1 39999449 39999764 -242193900 + AluSx SINE Alu 1 312 0 527 341 171 16 chr1 40000741 40001128 -242192536 - L2 LINE L2 -1 3271 2825 181 340 60 10 chr1 40001172 40001272 -242192392 - L2 LINE L2 -786 2528 2424 536 292 112 26 chr1 40001519 40001824 -242191840 - L2 LINE L2 0 3313 2983 2543 46 7 3 chr1 40001920 40002224 -242191440 + AluY SINE Alu 1 305 -6 209 301 27 27 chr1 40002602 40002675 -242190989 - L2 LINE L2 -196 3076 3004 2416 56 7 10 chr1 40002789 40003095 -242190569 + AluY SINE Alu 1 305 -6 272 84 42 28 chr1 40003237 40003308 -242190356 + T-rich Low_complexity Low_complexity 4 75 0 2119 85 46 4 chr1 40006369 40006650 -242187014 + AluSq SINE Alu 1 293 -20 251 296 28 0 chr1 40008091 40008162 -242185502 - L2 LINE L2 0 3272 3200 185 179 0 0 chr1 40008233 40008261 -242185403 - L2 LINE L2 -23 3249 3222 2146 83 22 0 chr1 40008262 40008584 -242185080 - AluY SINE Alu 0 328 1 1991 150 0 13 chr1 40008586 40008899 -242184765 - AluJb SINE Alu -3 309 1 2210 102 0 3 chr1 40009204 40009489 -242184175 - AluSx SINE Alu -28 284 1 1207 113 17 6 chr1 40009794 40009971 -242183693 - FRAM SINE Alu -2 174 1 306 100 0 0 chr1 40010014 40010054 -242183610 - tRNA-Thr-ACT tRNA tRNA -37 40 1 715 169 8 32 chr1 40010066 40010190 -242183474 - FLAM_A SINE Alu -11 122 2 558 328 103 32 chr1 40010518 40010896 -242182768 - L2 LINE L2 -582 2732 2328 1144 112 17 6 chr1 40061092 40061270 -242132394 - FRAM SINE Alu -1 175 1 309 100 0 0 chr1 40061313 40061353 -242132311 - tRNA-Thr-ACT tRNA tRNA -37 40 1 669 169 8 32 chr1 40061365 40061489 -242132175 - FLAM_A SINE Alu -11 122 2 567 335 170 26 chr1 40061817 40062389 -242131275 - L2 LINE L2 -582 2732 2047 2063 103 0 0 chr1 40062389 40062696 -242130968 + AluSg SINE Alu 1 307 0 567 335 170 26 chr1 40062696 40062785 -242130879 - L2 LINE L2 -1267 2047 1972 676 161 69 0 chr1 40062791 40062921 -242130743 + MIR SINE MIR 78 216 -46 485 326 168 10 chr1 40062941 40063327 -242130337 - L2 LINE L2 -1320 1994 1548 452 211 179 47 chr1 40063366 40063556 -242130108 - L1ME3A LINE L1 0 6170 5956 * 492 91 246 18 chr1 40063543 40063653 -242130011 - L1MA10 LINE L1 -1 6333 6199 953 188 0 12 chr1 40063663 40063853 -242129811 + FAM SINE Alu 2 175 0 1262 167 9 9 chr1 40063853 40064075 -242129589 + AluJb SINE Alu 1 222 -90 2561 191 31 28 chr1 40064169 40064741 -242128923 - L1MB4 LINE L1 -282 5898 5325 1671 163 0 25 chr1 40064744 40065064 -242128600 - AluJo SINE Alu 0 312 1 411 294 113 13 chr1 40065069 40065308 -242128356 - L1MEc LINE L1 -4327 1889 1373 256 295 77 0 chr1 40065314 40065392 -242128272 + L2 LINE L2 3184 3267 -5 329 352 16 16 chr1 40065872 40066000 -242127664 - L2 LINE L2 -4 3309 3182 2086 134 10 0 chr1 40066267 40066572 -242127092 + AluSx SINE Alu 1 308 -4 2081 102 7 23 chr1 40066573 40066876 -242126788 + AluSq SINE Alu 3 300 -13 2078 119 0 0 chr1 40066950 40067243 -242126421 + AluSg SINE Alu 1 293 -17 1643 166 36 0 chr1 40067430 40067731 -242125933 + AluJb SINE Alu 1 312 0 1268 213 20 38 chr1 40067755 40068053 -242125611 + L1ME1 LINE L1 4389 4682 -1464 378 0 0 0 chr1 40068053 40068095 -242125569 + (CA)n Simple_repeat Simple_repeat 2 43 0 1268 213 20 38 chr1 40068095 40068143 -242125521 + L1ME1 LINE L1 4682 4729 -1417 1539 217 104 75 chr1 40068152 40068604 -242125060 + MLT1E LTR MaLR 101 538 -55 2267 90 0 37 chr1 40068604 40068790 -242124874 - AluSx SINE Alu -1 311 120 198 0 0 0 chr1 40068790 40068812 -242124852 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1860 118 0 50 chr1 40068812 40069109 -242124555 - AluSg SINE Alu -28 282 1 2267 90 0 37 chr1 40069109 40069244 -242124420 - AluSx SINE Alu -190 122 1 1539 217 104 75 chr1 40069244 40069292 -242124372 + MLT1E LTR MaLR 538 590 -3 1258 221 54 4 chr1 40069293 40069569 -242124095 + L1ME1 LINE L1 4720 5009 -1137 1460 129 66 56 chr1 40069569 40069872 -242123792 + AluJo SINE Alu 2 307 -5 701 188 7 32 chr1 40069878 40070032 -242123632 + L1ME1 LINE L1 5676 5825 -341 795 268 25 54 chr1 40070081 40070395 -242123269 + L1ME1 LINE L1 5819 6123 -43 2264 67 27 0 chr1 40070395 40070694 -242122970 - AluSq SINE Alu -6 307 1 795 268 25 54 chr1 40070694 40070733 -242122931 + L1ME1 LINE L1 6123 6162 -4 245 348 26 9 chr1 40070975 40071090 -242122574 - L2 LINE L2 -539 2775 2659 45 19 0 0 chr1 40071125 40071177 -242122487 + AT_rich Low_complexity Low_complexity 1 52 0 195 253 172 0 chr1 40071299 40071361 -242122303 - MIR SINE MIR -105 103 42 2442 55 3 0 chr1 40071389 40071699 -242121965 - AluY SINE Alu 0 311 1 698 243 100 36 chr1 40071960 40072376 -242121288 - L1ME2 LINE L1 -207 5957 5401 2151 101 13 0 chr1 40072381 40072679 -242120985 + AluSx SINE Alu 1 302 -10 818 127 0 8 chr1 40072718 40072836 -242120828 + FLAM_C SINE Alu 11 127 -16 2401 64 0 3 chr1 40072907 40073205 -242120459 + AluY SINE Alu 3 299 -12 2289 99 0 0 chr1 40073301 40073603 -242120061 - AluSx SINE Alu -10 302 1 1549 183 6 31 chr1 40073679 40073996 -242119668 - AluJo SINE Alu -1 311 3 291 28 0 0 chr1 40074016 40074052 -242119612 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 562 213 9 0 chr1 40074060 40074168 -242119496 - FLAM_A SINE Alu -32 110 2 13119 115 22 26 chr1 40074965 40075285 -242118379 + Tigger1 DNA MER2_type 4 324 -2094 1714 155 0 39 chr1 40075285 40075594 -242118070 - AluJb SINE Alu -15 297 1 13119 115 22 26 chr1 40075594 40076531 -242117133 + Tigger1 DNA MER2_type 324 1263 -1155 2131 114 0 0 chr1 40076531 40076829 -242116835 - AluSg SINE Alu -12 298 1 13119 115 22 26 chr1 40076829 40077372 -242116292 + Tigger1 DNA MER2_type 1263 1799 -619 2397 77 0 0 chr1 40077372 40077683 -242115981 - AluY SINE Alu 0 311 1 13119 115 22 26 chr1 40077683 40077905 -242115759 + Tigger1 DNA MER2_type 1799 2020 -398 1085 168 0 24 chr1 40077905 40078113 -242115551 - AluJo SINE Alu -17 295 93 320 354 78 39 chr1 40078374 40078631 -242115033 + L2 LINE L2 2825 3091 -181 1175 148 141 28 chr1 40078684 40078818 -242114846 + MER33 DNA MER1_type 1 118 -2467 2059 110 3 0 chr1 40078818 40079108 -242114556 - AluSg SINE Alu -19 291 1 1175 148 141 28 chr1 40079108 40079180 -242114484 + MER33 DNA MER1_type 118 180 -2405 2018 117 0 7 chr1 40079180 40079502 -242114162 - AluY SINE Alu 0 311 1 1175 148 141 28 chr1 40079502 40079585 -242114079 + MER33 DNA MER1_type 180 324 0 2218 102 7 0 chr1 40080285 40080590 -242113074 + AluSp SINE Alu 1 307 -6 1921 108 80 0 chr1 40080593 40080880 -242112784 + AluSx SINE Alu 1 310 -2 206 280 54 65 chr1 40081235 40081328 -242112336 - L2 LINE L2 -42 3271 3180 1218 183 66 4 chr1 40081421 40081505 -242112159 + AluJo SINE Alu 37 114 -198 192 77 0 0 chr1 40081505 40081531 -242112133 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1218 183 66 4 chr1 40081531 40081687 -242111977 + AluJo SINE Alu 114 292 -20 1116 185 9 50 chr1 40081748 40081766 -242111898 - MIR SINE MIR -38 224 207 2180 119 0 0 chr1 40081766 40082077 -242111587 - AluSx SINE Alu -1 311 1 1116 185 9 50 chr1 40082077 40082280 -242111384 - MIR SINE MIR -55 207 12 882 164 41 77 chr1 40082294 40082427 -242111237 + MER5A DNA MER1_type 1 126 -63 2265 99 0 3 chr1 40082427 40082739 -242110925 - AluSq SINE Alu -2 311 1 882 164 41 77 chr1 40082739 40082800 -242110864 + MER5A DNA MER1_type 126 188 -1 457 327 206 27 chr1 40082982 40083718 -242109946 - L2 LINE L2 -645 2669 1802 183 139 0 0 chr1 40084372 40084408 -242109256 + (CGG)n Simple_repeat Simple_repeat 3 38 0 301 268 99 63 chr1 40086810 40086952 -242106712 + L2 LINE L2 3125 3271 -1 198 0 0 0 chr1 40087074 40087096 -242106568 + (CCTAA)n Simple_repeat Simple_repeat 2 23 0 232 200 15 15 chr1 40087846 40087911 -242105753 + (TG)n Simple_repeat Simple_repeat 1 65 0 374 298 81 40 chr1 40087911 40088035 -242105629 - L2 LINE L2 -1 3271 3143 255 280 133 70 chr1 40089775 40090300 -242103364 - L2 LINE L2 -1242 2072 1515 180 0 0 0 chr1 40090301 40090321 -242103343 + (T)n Simple_repeat Simple_repeat 1 20 0 2003 107 23 7 chr1 40090330 40090629 -242103035 - AluSq SINE Alu -9 304 1 30 69 0 0 chr1 40090642 40090700 -242102964 + AT_rich Low_complexity Low_complexity 1 58 0 815 116 0 103 chr1 40090773 40090928 -242102736 - AluSg/x SINE Alu -17 295 157 1436 118 0 10 chr1 40090928 40091132 -242102532 - AluSq SINE Alu -111 202 1 2214 104 0 0 chr1 40091143 40091440 -242102224 - AluSx SINE Alu -15 297 1 981 283 128 16 chr1 40091521 40092020 -242101644 - L1MC4a LINE L1 -1884 5924 5370 1874 168 0 0 chr1 40092672 40092982 -242100682 - AluJb SINE Alu -2 310 1 1648 163 7 29 chr1 40092986 40093292 -242100372 - AluJo SINE Alu -3 309 11 553 243 201 0 chr1 40093408 40093552 -242100112 + MER5A DNA MER1_type 17 189 0 302 250 0 71 chr1 40094619 40094731 -242098933 - MIR3 SINE MIR -92 116 13 211 294 78 88 chr1 40095912 40096014 -242097650 - L2 LINE L2 -21 3292 3192 505 238 143 18 chr1 40097013 40097122 -242096542 + MER5A DNA MER1_type 1 140 -49 2321 78 3 0 chr1 40097122 40097416 -242096248 - AluSp SINE Alu -18 295 1 505 238 143 18 chr1 40097416 40097474 -242096190 + MER5A DNA MER1_type 140 189 0 1669 112 80 25 chr1 40097489 40097775 -242095889 - AluSx SINE Alu -10 302 1 1487 273 55 22 chr1 40098126 40098581 -242095083 - L2 LINE L2 -6 3307 2838 446 149 0 0 chr1 40098669 40098736 -242094928 + AluJ/FLAM SINE Alu 12 78 -234 703 145 137 0 chr1 40098738 40098855 -242094809 + AluJo/FRAM SINE Alu 159 291 -21 1766 175 27 23 chr1 40098855 40099378 -242094286 - L1MB7 LINE L1 -4 6180 5606 2287 71 3 0 chr1 40099378 40099672 -242093992 - AluY SINE Alu -16 295 1 1766 175 27 23 chr1 40099672 40099766 -242093898 - L1MB7 LINE L1 -578 5606 5514 3701 148 22 0 chr1 40099993 40100636 -242093028 - L1MB3 LINE L1 0 6183 5506 395 284 16 45 chr1 40100918 40101113 -242092551 - MIR SINE MIR -63 145 5 192 257 115 53 chr1 40101438 40101551 -242092113 - MIR SINE MIR 0 262 143 2066 120 3 0 chr1 40101563 40101862 -242091802 + AluSq SINE Alu 1 300 -13 1234 132 11 0 chr1 40101867 40102049 -242091615 + AluSg/x SINE Alu 121 304 -6 2137 94 38 0 chr1 40102101 40102388 -242091276 - AluSx SINE Alu -14 298 1 352 257 128 34 chr1 40103778 40103957 -242089707 - MIR SINE MIR -49 213 18 2512 75 0 3 chr1 40104117 40104423 -242089241 - AluY SINE Alu -6 305 1 572 133 89 0 chr1 40104695 40104785 -242088879 + FLAM_A SINE Alu 4 101 -41 2264 103 3 0 chr1 40104800 40105092 -242088572 + AluSg SINE Alu 1 293 -17 2367 78 20 0 chr1 40105226 40105522 -242088142 - AluY SINE Alu -9 302 1 180 322 0 22 chr1 40105906 40105996 -242087668 - L2 LINE L2 -1672 1642 1555 250 365 55 7 chr1 40106207 40106352 -242087312 - L3 LINE CR1 -481 1096 945 1959 106 28 14 chr1 40106599 40106883 -242086781 - AluSq SINE Alu -20 293 6 1790 171 17 3 chr1 40107644 40107943 -242085721 + AluJo SINE Alu 1 303 -9 1424 183 95 0 chr1 40108960 40109234 -242084430 + AluJo SINE Alu 1 300 -12 273 309 37 0 chr1 40109628 40109709 -242083955 - L2 LINE L2 -20 3252 3169 2321 103 3 0 chr1 40109934 40110235 -242083429 - AluSx SINE Alu -10 302 1 208 211 0 0 chr1 40110524 40110562 -242083102 + L2 LINE L2 3209 3246 -26 251 333 11 0 chr1 40112095 40112185 -242081479 + L3 LINE CR1 1294 1384 -193 802 153 0 0 chr1 40112207 40112325 -242081339 - AluSg/x SINE Alu -38 274 157 1331 185 211 54 chr1 40112680 40113056 -242080608 - L1ME3A LINE L1 -5 6165 5701 2250 107 0 3 chr1 40113056 40113354 -242080310 + AluSx SINE Alu 1 297 -15 1331 185 211 54 chr1 40113354 40113442 -242080222 - L1ME3A LINE L1 -469 5701 5628 339 222 14 0 chr1 40113446 40113518 -242080146 - L1ME3A LINE L1 -563 5558 5486 233 200 25 38 chr1 40113810 40113890 -242079774 - L1MEd LINE L1 -5987 132 54 888 302 40 34 chr1 40114057 40114349 -242079315 + L2 LINE L2 1901 2199 -1115 2642 49 0 7 chr1 40114349 40114657 -242079007 + AluY SINE Alu 1 306 -5 888 302 40 34 chr1 40114657 40114808 -242078856 + L2 LINE L2 2199 2347 -967 184 0 97 0 chr1 40114830 40114861 -242078803 + T-rich Low_complexity Low_complexity 2 35 0 2258 89 0 3 chr1 40114863 40115145 -242078519 - AluSg SINE Alu -29 281 1 2542 70 0 0 chr1 40115292 40115591 -242078073 - AluY SINE Alu -11 300 2 530 311 48 64 chr1 40115647 40116087 -242077577 + L2 LINE L2 2833 3265 -7 190 303 247 0 chr1 40117333 40117495 -242076169 - MIR SINE MIR -14 248 47 837 228 50 0 chr1 40118069 40118249 -242075415 - MER5A DNA MER1_type 0 189 1 187 167 0 0 chr1 40118381 40118417 -242075247 - MIR SINE MIR -25 237 202 441 299 71 11 chr1 40118449 40118633 -242075031 - MIR SINE MIR -59 203 9 2084 132 7 13 chr1 40118637 40118941 -242074723 - AluSx SINE Alu -10 302 1 194 268 28 14 chr1 40118994 40119065 -242074599 + L2 LINE L2 2716 2787 -527 312 323 157 14 chr1 40119072 40119289 -242074375 - MIR SINE MIR -6 256 9 539 200 291 6 chr1 40120271 40120446 -242073218 - MIR SINE MIR -6 256 32 2045 121 0 30 chr1 40120809 40121129 -242072535 - AluSx SINE Alu 0 312 1 180 0 0 0 chr1 40123557 40123577 -242070087 + (T)n Simple_repeat Simple_repeat 1 20 0 372 103 0 0 chr1 40124853 40124911 -242068753 + (CCTG)n Simple_repeat Simple_repeat 2 59 0 225 65 0 0 chr1 40126498 40126529 -242067135 + (CAG)n Simple_repeat Simple_repeat 2 32 0 205 311 146 49 chr1 40126849 40127321 -242066343 - L2 LINE L2 -706 2608 2091 939 284 110 15 chr1 40129551 40129942 -242063722 - MLT1L LTR MaLR -62 553 126 185 291 175 10 chr1 40130035 40130138 -242063526 - MIR SINE MIR -122 140 21 725 197 98 102 chr1 40130462 40130560 -242063104 - L1M LINE L1 -743 5403 5306 1550 140 39 49 chr1 40130560 40130846 -242062818 - AluJb SINE Alu -18 294 12 725 197 98 102 chr1 40130846 40131094 -242062570 - L1M LINE L1 -840 5306 5081 322 236 28 57 chr1 40131283 40131389 -242062275 - L2 LINE L2 -1 3312 3210 409 279 85 0 chr1 40132096 40132225 -242061439 - MIR SINE MIR -46 216 77 21 36 0 0 chr1 40132262 40132290 -242061374 + AT_rich Low_complexity Low_complexity 1 28 0 259 215 21 65 chr1 40132361 40132454 -242061210 - L2 LINE L2 -1 3312 3224 188 333 51 0 chr1 40132748 40132826 -242060838 - L2 LINE L2 -528 2786 2705 24 53 0 0 chr1 40133361 40133399 -242060265 + GC_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr1 40134827 40134857 -242058807 + AT_rich Low_complexity Low_complexity 1 30 0 2041 145 7 0 chr1 40135635 40135945 -242057719 + AluJo SINE Alu 1 312 0 2042 88 0 18 chr1 40136914 40137187 -242056477 - AluSx SINE Alu -5 307 40 409 140 0 0 chr1 40138685 40138768 -242054896 - AluSq SINE Alu 0 308 226 1012 109 0 0 chr1 40138768 40138896 -242054768 - AluSq SINE Alu -185 128 1 933 130 0 0 chr1 40139019 40139142 -242054522 - FLAM_C SINE Alu -16 127 5 1877 109 64 4 chr1 40139409 40139676 -242053988 + AluSq SINE Alu 16 298 -15 2085 137 7 0 chr1 40139685 40139978 -242053686 + AluSg SINE Alu 1 295 -15 2304 105 0 10 chr1 40140252 40140558 -242053106 - AluSx SINE Alu -9 303 1 285 229 90 62 chr1 40140568 40140712 -242052952 - L1ME4a LINE L1 0 6121 5974 268 264 83 45 chr1 40140752 40141017 -242052647 - L1ME4a LINE L1 -404 5760 5621 759 161 75 40 chr1 40141728 40141902 -242051762 + L1MC1 LINE L1 6154 6333 0 235 338 0 0 chr1 40141913 40141987 -242051677 + MIR3 SINE MIR 89 162 -46 1312 217 124 52 chr1 40142017 40142346 -242051318 - L1MC5 LINE L1 -30 7931 7627 2420 85 0 0 chr1 40142346 40142641 -242051023 - AluSx SINE Alu -17 295 1 1312 217 124 52 chr1 40142641 40142901 -242050763 - L1MC5 LINE L1 -334 7627 7300 2283 246 125 22 chr1 40142902 40143724 -242049940 + L2 LINE L2 1836 2742 -572 455 191 73 36 chr1 40143725 40143835 -242049829 + L1M4 LINE L1 4712 4825 -1321 443 201 194 22 chr1 40143849 40143983 -242049681 + MIR SINE MIR 58 214 -48 946 153 0 7 chr1 40143985 40144135 -242049529 + AluJb SINE Alu 1 149 -163 225 235 0 0 chr1 40144142 40144193 -242049471 + MIR SINE MIR 204 254 -8 197 296 82 10 chr1 40144238 40144336 -242049328 - MIR SINE MIR -97 165 61 915 255 33 24 chr1 40144535 40144868 -242048796 - L1M4 LINE L1 -2364 3782 3447 2590 156 101 63 chr1 40144988 40145279 -242048385 - L1MB2 LINE L1 0 6171 5892 1979 119 0 18 chr1 40145279 40145565 -242048099 - AluSx SINE Alu -14 298 18 2590 156 101 63 chr1 40145565 40145576 -242048088 - L1MB2 LINE L1 -279 5892 5883 2032 147 7 0 chr1 40145576 40145875 -242047789 - AluSq SINE Alu -12 301 1 1915 130 27 23 chr1 40145876 40146175 -242047489 - AluJb SINE Alu -12 300 1 2590 156 101 63 chr1 40146175 40146483 -242047181 - L1MB2 LINE L1 -287 5884 5535 537 196 143 0 chr1 40146511 40146623 -242047041 - FLAM_A SINE Alu -5 128 1 419 78 0 65 chr1 40146809 40146886 -242046778 - AluSx SINE Alu 0 310 239 1345 130 0 16 chr1 40146886 40147078 -242046586 - AluSx SINE Alu -123 189 1 1621 173 20 30 chr1 40147086 40147386 -242046278 - AluSx SINE Alu -15 297 1 493 232 0 63 chr1 40147485 40147627 -242046037 - FLAM_C SINE Alu 0 133 1 377 291 76 38 chr1 40149120 40149278 -242044386 - MIR3 SINE MIR -7 201 38 243 0 0 0 chr1 40149374 40149401 -242044263 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 206 224 66 53 chr1 40149553 40149629 -242044035 + L2 LINE L2 2203 2279 -1035 1030 152 6 0 chr1 40150204 40150368 -242043296 + FAM SINE Alu 1 48 -1 2087 95 0 51 chr1 40150491 40150806 -242042858 - AluSg SINE Alu -11 299 1 21 0 0 0 chr1 40151194 40151215 -242042449 + AT_rich Low_complexity Low_complexity 1 21 0 2300 109 3 0 chr1 40151215 40151517 -242042147 - AluSp SINE Alu -10 303 1 1469 161 58 34 chr1 40151894 40152185 -242041479 - AluJo SINE Alu -14 298 1 2369 95 0 0 chr1 40152215 40152509 -242041155 + AluSc SINE Alu 1 294 -15 2124 120 20 0 chr1 40153225 40153525 -242040139 - AluSx SINE Alu -6 306 1 1862 146 34 3 chr1 40153667 40153961 -242039703 - AluJb SINE Alu -7 305 3 4551 134 32 76 chr1 40154139 40154411 -242039253 - L1MB7 LINE L1 -10 6174 5892 2172 121 20 0 chr1 40154411 40154717 -242038947 - AluSx SINE Alu 0 312 1 4551 134 32 76 chr1 40154717 40154824 -242038840 - L1MB7 LINE L1 -292 5892 5782 1772 137 77 51 chr1 40154824 40155160 -242038504 + MER7A DNA MER2_type 4 346 0 4551 134 32 76 chr1 40155160 40155422 -242038242 - L1MB7 LINE L1 -402 5782 5510 815 179 0 15 chr1 40155422 40155556 -242038108 + FLAM_C SINE Alu 2 133 0 4551 134 32 76 chr1 40155556 40155802 -242037862 - L1MB7 LINE L1 -674 5510 5336 2039 114 53 4 chr1 40155802 40156083 -242037581 - AluSx SINE Alu -14 298 4 4551 134 32 76 chr1 40156083 40156321 -242037343 - L1MB7 LINE L1 -848 5336 5089 229 267 0 0 chr1 40156682 40156742 -242036922 - L1ME LINE L1 -294 5827 5768 256 301 68 0 chr1 40156895 40156968 -242036696 - L2 LINE L2 -9 3304 3227 477 157 101 0 chr1 40157119 40157208 -242036456 - MER7A DNA MER2_type -250 96 1 272 366 99 4 chr1 40157325 40157557 -242036107 - L2 LINE L2 -459 2855 2602 623 269 58 46 chr1 40157801 40157865 -242035799 - Charlie7 DNA MER1_type -2289 323 261 2015 145 0 10 chr1 40157865 40158169 -242035495 - AluJb SINE Alu -11 301 1 623 269 58 46 chr1 40158169 40158364 -242035300 - Charlie7 DNA MER1_type -2351 261 61 335 326 144 50 chr1 40158488 40158904 -242034760 - L2 LINE L2 -824 2490 2115 1959 128 9 35 chr1 40158904 40159223 -242034441 - AluSx SINE Alu -1 311 1 335 326 144 50 chr1 40159223 40159342 -242034322 - L2 LINE L2 -1199 2115 2009 2086 122 7 20 chr1 40159342 40159645 -242034019 + AluSx SINE Alu 1 299 -13 335 326 144 50 chr1 40159645 40159669 -242033995 - L2 LINE L2 -1305 2009 1877 2291 105 0 0 chr1 40159718 40160013 -242033651 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr1 40160025 40160053 -242033611 + AT_rich Low_complexity Low_complexity 1 28 0 1589 191 3 26 chr1 40160053 40160357 -242033307 + AluJo SINE Alu 1 297 -15 2236 115 0 0 chr1 40160375 40160671 -242032993 + AluSg SINE Alu 1 296 -14 1813 132 30 0 chr1 40160682 40160947 -242032717 + AluJb SINE Alu 30 302 -10 21 36 0 0 chr1 40161460 40161488 -242032176 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr1 40162146 40162193 -242031471 + AT_rich Low_complexity Low_complexity 1 47 0 311 250 120 20 chr1 40162241 40162341 -242031323 - MIR SINE MIR -63 145 36 873 184 0 0 chr1 40162627 40162763 -242030901 + FRAM SINE Alu 20 155 -21 852 152 0 0 chr1 40162800 40162925 -242030739 + FLAM_C SINE Alu 1 125 -18 2316 82 0 25 chr1 40163207 40163525 -242030139 - AluY SINE Alu -1 310 1 21 0 0 0 chr1 40163534 40163555 -242030109 + AT_rich Low_complexity Low_complexity 1 21 0 775 317 116 53 chr1 40163595 40164343 -242029321 - L3 LINE CR1 -80 1497 703 203 250 0 0 chr1 40164361 40164401 -242029263 - L2 LINE L2 -11 3302 3263 2563 64 0 0 chr1 40164536 40164847 -242028817 + AluY SINE Alu 1 311 0 272 167 0 0 chr1 40164853 40164907 -242028757 + L1 LINE L1 4773 4826 -1320 340 277 116 53 chr1 40165175 40165484 -242028180 + L1ME LINE L1 5387 5714 -456 26 0 0 0 chr1 40165624 40165650 -242028014 + AT_rich Low_complexity Low_complexity 1 26 0 187 284 27 14 chr1 40166097 40166171 -242027493 - L2 LINE L2 -844 2470 2396 231 275 14 0 chr1 40166359 40166428 -242027236 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 5961 92 28 1 chr1 40166428 40167273 -242026391 - L1PA13 LINE L1 -20 6143 5276 2385 94 0 0 chr1 40167484 40167793 -242025871 + AluSg SINE Alu 1 309 -1 2380 95 3 0 chr1 40168095 40168399 -242025265 - AluSp SINE Alu -8 305 1 2436 212 65 43 chr1 40169472 40169674 -242023990 - L1MC4 LINE L1 0 8042 7846 1759 170 7 7 chr1 40169674 40169989 -242023675 - AluSx SINE Alu 0 315 1 2436 212 65 43 chr1 40169989 40170535 -242023129 - L1MC4 LINE L1 -196 7846 7276 * 4297 163 69 28 chr1 40170532 40171421 -242022243 - L1MB3 LINE L1 0 6183 5259 566 172 57 0 chr1 40171514 40171636 -242022028 - L1MB3 LINE L1 -874 5272 5144 2133 213 145 126 chr1 40171636 40171912 -242021752 - L1MC4a LINE L1 -601 7207 6938 1652 148 18 115 chr1 40171912 40172296 -242021368 - MER7A DNA MER2_type 0 346 2 2133 213 145 126 chr1 40172296 40172505 -242021159 - L1MC4a LINE L1 -870 6938 6734 183 80 0 0 chr1 40172505 40172530 -242021134 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2133 213 145 126 chr1 40172530 40173000 -242020664 - L1MC4a LINE L1 -1074 6734 6274 195 42 0 0 chr1 40173000 40173024 -242020640 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1652 184 11 0 chr1 40173024 40173301 -242020363 - AluJo SINE Alu -32 280 1 2133 213 145 126 chr1 40173301 40173431 -242020233 - L1MC4a LINE L1 -1534 6274 6148 2101 123 23 0 chr1 40173431 40173733 -242019931 - AluSx SINE Alu -3 309 1 2133 213 145 126 chr1 40173733 40174149 -242019515 - L1MC4a LINE L1 -1660 6148 5674 1814 156 0 58 chr1 40174963 40175271 -242018393 - AluJb SINE Alu -22 290 1 27 29 0 0 chr1 40175395 40175429 -242018235 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 40175845 40175867 -242017797 + AT_rich Low_complexity Low_complexity 1 22 0 638 259 72 55 chr1 40176216 40176803 -242016861 - L1MC5 LINE L1 -54 7907 7311 235 236 132 19 chr1 40176970 40177076 -242016588 - L1MC4 LINE L1 -821 7221 7104 527 189 27 9 chr1 40177103 40177214 -242016450 - L1MC4 LINE L1 -1126 6916 6804 * 886 269 158 42 chr1 40177199 40177794 -242015870 - L1MC4 LINE L1 -748 5398 5197 183 42 0 0 chr1 40177816 40177840 -242015824 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 314 289 219 23 chr1 40178027 40178212 -242015452 - L1MC4 LINE L1 -1536 4610 4463 2095 115 48 0 chr1 40178212 40178507 -242015157 - AluSp SINE Alu -2 311 3 314 289 219 23 chr1 40178507 40179239 -242014425 - L1MC4 LINE L1 -1683 4463 3544 183 42 0 0 chr1 40179266 40179290 -242014374 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1209 104 31 0 chr1 40179334 40179527 -242014137 + L1MA3 LINE L1 6102 6300 -5 21 0 0 0 chr1 40179527 40179548 -242014116 + AT_rich Low_complexity Low_complexity 1 21 0 2168 133 0 0 chr1 40179666 40179967 -242013697 - AluJb SINE Alu -11 301 1 2133 87 21 7 chr1 40180479 40180766 -242012898 - AluSq SINE Alu -22 291 1 269 279 103 70 chr1 40181076 40181357 -242012307 - L1MC4 LINE L1 -3105 3041 2771 2481 51 3 0 chr1 40181357 40181650 -242012014 + AluY SINE Alu 1 294 -17 269 279 103 70 chr1 40181650 40182067 -242011597 - L1MC4 LINE L1 -3375 2771 2320 642 255 162 20 chr1 40182702 40183047 -242010617 - HAL1b LINE L1 -607 741 348 516 184 20 0 chr1 40183831 40183929 -242009735 + L1MC4 LINE L1 7943 8042 0 964 126 0 7 chr1 40184420 40184555 -242009109 + AluJo SINE Alu 1 134 -178 660 199 126 11 chr1 40184556 40184817 -242008847 + L1ME3A LINE L1 2874 3164 -2982 457 335 22 16 chr1 40184834 40185019 -242008645 - L2 LINE L2 -554 2760 2575 1549 198 55 45 chr1 40185180 40185559 -242008105 - MLT2C1 LTR ERVL -2 395 13 1442 194 19 66 chr1 40185566 40185886 -242007778 + AluJo SINE Alu 3 307 -5 239 357 107 34 chr1 40186114 40186442 -242007222 - L2 LINE L2 -958 2356 2005 1041 144 22 11 chr1 40186448 40186628 -242007036 + AluJo SINE Alu 119 300 -12 394 278 36 159 chr1 40186721 40187023 -242006641 + L2 LINE L2 2989 3253 -19 224 282 0 28 chr1 40187039 40187110 -242006554 - L2 LINE L2 -190 3082 3014 345 257 56 83 chr1 40187244 40187285 -242006379 + L1ME3A LINE L1 4569 4610 -1536 1547 182 41 3 chr1 40187285 40187576 -242006088 + AluJb SINE Alu 1 302 -10 345 257 56 83 chr1 40187576 40187678 -242005986 + L1ME3A LINE L1 4610 4708 -1438 485 242 85 122 chr1 40188133 40188680 -242004984 + L1ME3A LINE L1 5315 5874 -296 1929 154 3 0 chr1 40188693 40188986 -242004678 + AluSx SINE Alu 13 306 -6 2224 131 0 0 chr1 40188988 40189293 -242004371 + AluSx SINE Alu 1 305 -7 2230 121 0 0 chr1 40189320 40189618 -242004046 + AluSx SINE Alu 1 298 -14 1269 104 0 0 chr1 40189618 40189782 -242003882 + AluSg/x SINE Alu 132 295 -15 2445 83 0 0 chr1 40190062 40190363 -242003301 + AluSg SINE Alu 1 301 -9 4130 138 42 8 chr1 40190426 40191155 -242002509 - L1MA9 LINE L1 -5 6307 5554 804 177 29 23 chr1 40191601 40191776 -242001888 + MER104 DNA MER2_type 1 176 -4 1934 161 3 3 chr1 40191866 40192164 -242001500 + AluJb SINE Alu 1 298 -14 199 279 8 108 chr1 40192213 40192342 -242001322 - MIR SINE MIR -15 247 132 2427 55 14 0 chr1 40192501 40192790 -242000874 + AluY SINE Alu 1 293 -18 22 80 0 0 chr1 40192972 40193022 -242000642 + AT_rich Low_complexity Low_complexity 1 50 0 1993 98 39 7 chr1 40193295 40193580 -242000084 + AluSx SINE Alu 1 294 -18 243 325 0 33 chr1 40193624 40193744 -241999920 - HAL1 LINE L1 -615 1892 1777 325 223 209 14 chr1 40193768 40193810 -241999854 - HAL1 LINE L1 -806 1701 1668 235 49 49 0 chr1 40193810 40193851 -241999813 + (TA)n Simple_repeat Simple_repeat 2 44 0 325 223 209 14 chr1 40193851 40193947 -241999717 - HAL1 LINE L1 -839 1668 1536 254 105 53 18 chr1 40193945 40194002 -241999662 - L1MB7 LINE L1 0 6184 6126 * 1937 274 78 20 chr1 40193997 40194699 -241998965 - HAL1 LINE L1 -1451 1056 314 325 256 97 97 chr1 40194710 40194886 -241998778 - HAL1 LINE L1 -2328 179 4 246 301 84 0 chr1 40194897 40194980 -241998684 + L2 LINE L2 3169 3258 -14 1793 235 141 15 chr1 40195004 40195485 -241998179 - MLT1F LTR MaLR 0 542 1 1453 228 105 12 chr1 40195485 40195990 -241997674 + L1ME LINE L1 3062 3613 -2533 2261 106 7 0 chr1 40196013 40196316 -241997348 - AluSg SINE Alu -3 307 3 848 146 0 161 chr1 40196317 40196522 -241997142 - FRAM SINE Alu -4 172 1 2336 243 122 25 chr1 40196565 40197226 -241996438 + L1ME LINE L1 3880 4476 -1670 1751 120 4 12 chr1 40197226 40197484 -241996180 + AluSx SINE Alu 36 291 -21 266 0 29 0 chr1 40197484 40197518 -241996146 + (TA)n Simple_repeat Simple_repeat 1 35 0 2336 243 122 25 chr1 40197518 40197957 -241995707 + L1ME LINE L1 4475 5087 -1059 1980 142 7 3 chr1 40197957 40198253 -241995411 - AluSx SINE Alu -15 297 1 963 198 105 73 chr1 40198261 40198331 -241995333 + L1ME LINE L1 5132 5198 -966 1487 184 59 7 chr1 40198331 40198619 -241995045 + AluJo SINE Alu 1 303 -9 963 198 105 73 chr1 40198619 40198763 -241994901 + L1ME LINE L1 5198 5336 -828 2174 118 7 0 chr1 40198763 40199060 -241994604 + AluSq SINE Alu 1 299 -14 963 198 105 73 chr1 40199060 40199270 -241994394 + L1ME LINE L1 5336 5575 -589 1934 148 0 3 chr1 40199270 40199579 -241994085 + AluSx SINE Alu 1 308 0 963 198 105 73 chr1 40199579 40199610 -241994054 + L1ME LINE L1 5575 5604 -560 1845 170 156 3 chr1 40199611 40199970 -241993694 + MER47B DNA MER2_type 5 418 0 1944 94 0 0 chr1 40199982 40200236 -241993428 - AluSx SINE Alu -23 289 36 243 259 78 0 chr1 40200260 40200376 -241993288 + L1M4 LINE L1 4414 4538 -1608 411 299 40 88 chr1 40200489 40200914 -241992750 - L1ME LINE L1 -351 5819 5409 265 204 171 0 chr1 40200916 40201004 -241992660 - L1ME LINE L1 -1002 5357 5255 358 299 78 13 chr1 40201086 40201240 -241992424 - L1ME LINE L1 -1022 5124 4961 2018 88 53 18 chr1 40201345 40201629 -241992035 + AluSx SINE Alu 1 294 -18 776 267 138 54 chr1 40201632 40202425 -241991239 - L1ME LINE L1 -1459 4687 3829 26 0 0 0 chr1 40203039 40203065 -241990599 + AT_rich Low_complexity Low_complexity 1 26 0 2253 105 3 16 chr1 40203228 40203543 -241990121 + AluSx SINE Alu 1 311 -1 401 218 125 50 chr1 40203561 40203740 -241989924 + L1ME LINE L1 5644 5839 -331 1921 144 10 10 chr1 40204301 40204592 -241989072 - AluSx SINE Alu -21 291 1 2422 85 0 7 chr1 40204599 40204906 -241988758 - AluSx SINE Alu -7 305 1 551 32 0 0 chr1 40205083 40205146 -241988518 - AluY SINE Alu -234 75 13 1621 81 0 0 chr1 40205147 40205344 -241988320 + AluSg/x SINE Alu 85 281 -31 309 51 0 0 chr1 40205347 40205386 -241988278 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 241 213 83 102 chr1 40205444 40205552 -241988112 + L2 LINE L2 3206 3311 -2 2166 125 3 0 chr1 40205687 40205984 -241987680 + AluSp SINE Alu 1 298 -15 303 28 0 0 chr1 40205984 40206020 -241987644 + (TA)n Simple_repeat Simple_repeat 2 37 0 935 148 0 15 chr1 40206147 40206282 -241987382 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr1 40206870 40206899 -241986765 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 40207352 40207372 -241986292 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 1082 179 41 37 chr1 40209232 40209450 -241984214 - MER20 DNA MER1_type 0 219 1 809 183 43 38 chr1 40209644 40209689 -241983975 - MER3 DNA MER1_type -22 187 144 2039 128 17 0 chr1 40209689 40209978 -241983686 + AluSq SINE Alu 1 294 -19 809 183 43 38 chr1 40209978 40210118 -241983546 - MER3 DNA MER1_type -65 144 1 338 186 193 41 chr1 40211483 40211628 -241982036 - L1ME4a LINE L1 -86 6035 5869 2502 78 0 3 chr1 40212204 40212513 -241981151 - AluY SINE Alu -3 308 1 1955 158 7 0 chr1 40212596 40212900 -241980764 + AluSx SINE Alu 1 306 -6 2311 78 14 0 chr1 40212900 40213193 -241980471 + AluSp SINE Alu 1 297 -16 302 182 15 0 chr1 40213193 40213259 -241980405 + GA-rich Low_complexity Low_complexity 1 67 0 266 267 0 89 chr1 40213851 40213941 -241979723 + MIR SINE MIR 3 84 -178 458 289 80 52 chr1 40213978 40214227 -241979437 + MIR SINE MIR 6 261 -1 1765 150 45 3 chr1 40214340 40214627 -241979037 + AluJo SINE Alu 14 312 0 32 17 7 0 chr1 40214812 40214891 -241978773 + AT_rich Low_complexity Low_complexity 1 39 0 735 192 0 17 chr1 40215072 40215192 -241978472 + FLAM_A SINE Alu 11 128 -14 1980 157 0 7 chr1 40215214 40215513 -241978151 - AluJo SINE Alu -15 297 1 831 154 15 15 chr1 40215513 40215649 -241978015 - AluJo SINE Alu -176 136 1 2381 88 3 0 chr1 40216438 40216732 -241976932 - AluSx SINE Alu -17 295 1 2464 86 0 0 chr1 40216764 40217065 -241976599 + AluY SINE Alu 1 301 -10 4524 182 68 9 chr1 40217153 40217967 -241975697 - MER21B LTR ERV1 -1 862 1 323 345 0 0 chr1 40218013 40218126 -241975538 + MIR SINE MIR 42 154 -108 2489 149 5 34 chr1 40218131 40218457 -241975207 - MER57A LTR ERV1 0 403 90 2309 100 0 0 chr1 40218457 40218756 -241974908 - AluSx SINE Alu -13 299 1 2489 149 5 34 chr1 40218756 40218844 -241974820 - MER57A LTR ERV1 -313 90 1 643 128 21 0 chr1 40218892 40218986 -241974678 - MER57A-int LTR ERV1 -54 7483 7388 247 163 41 0 chr1 40218986 40219035 -241974629 - LTR54B LTR ERV1 -214 284 234 439 155 0 0 chr1 40219035 40219106 -241974558 - MER57A-int LTR ERV1 -202 7335 7265 767 103 26 0 chr1 40219106 40219222 -241974442 - LTR54B LTR ERV1 -377 121 3 4211 128 19 57 chr1 40219222 40219893 -241973771 - MER57A-int LTR ERV1 -391 7146 6505 1855 161 0 7 chr1 40219893 40220191 -241973473 + AluJb SINE Alu 1 296 -16 4211 128 19 57 chr1 40220191 40220268 -241973396 - MER57A-int LTR ERV1 -1032 6505 6427 1723 113 32 4 chr1 40220298 40220546 -241973118 - AluSc SINE Alu -54 255 1 3261 193 5 27 chr1 40220546 40220707 -241972957 - MER57A-int LTR ERV1 -1092 6445 6282 2154 91 47 10 chr1 40220707 40221005 -241972659 - AluSc SINE Alu 0 309 1 3261 193 5 27 chr1 40221005 40221479 -241972185 - MER57A-int LTR ERV1 -1255 6282 5824 3924 162 26 33 chr1 40221807 40222035 -241971629 - MER57A-int LTR ERV1 -1716 5821 5593 2033 119 0 11 chr1 40222035 40222346 -241971318 - AluSx SINE Alu 0 308 1 3924 162 26 33 chr1 40222346 40222876 -241970788 - MER57A-int LTR ERV1 -1944 5593 5067 1946 123 3 11 chr1 40222881 40223192 -241970472 - AluSx SINE Alu 0 309 1 2154 110 0 4 chr1 40223201 40223506 -241970158 - AluSg SINE Alu 0 304 1 370 82 0 0 chr1 40223506 40223555 -241970109 + MADE1 DNA Mariner 32 80 0 2850 141 45 50 chr1 40223587 40224203 -241969461 - MER57A-int LTR ERV1 -1830 4501 3889 3570 175 20 97 chr1 40224206 40224337 -241969327 - MER57A-int LTR ERV1 -6756 781 642 1785 165 7 10 chr1 40224337 40224628 -241969036 - AluJb SINE Alu -9 303 14 3570 175 20 97 chr1 40224628 40224924 -241968740 - MER57A-int LTR ERV1 -6895 642 325 2244 96 36 0 chr1 40224924 40225226 -241968438 + AluSq SINE Alu 1 313 0 3570 175 20 97 chr1 40225226 40225643 -241968021 - MER57A-int LTR ERV1 -7212 325 1 2556 159 18 0 chr1 40225643 40226039 -241967625 - MER57A LTR ERV1 0 403 1 1959 170 7 0 chr1 40226411 40226711 -241966953 - AluJb SINE Alu -10 302 1 807 114 0 0 chr1 40226957 40227062 -241966602 - AluSg/x SINE Alu -11 301 197 2064 143 0 10 chr1 40228030 40228331 -241965333 + AluSx SINE Alu 1 298 -14 1912 148 3 3 chr1 40228392 40228682 -241964982 - AluSx SINE Alu -22 290 1 26 30 0 0 chr1 40228689 40228722 -241964942 + AT_rich Low_complexity Low_complexity 1 33 0 315 315 21 28 chr1 40228778 40228921 -241964743 + MIR SINE MIR 57 198 -64 692 225 134 22 chr1 40228921 40229152 -241964512 - MIR SINE MIR 0 262 6 21 0 0 0 chr1 40229655 40229676 -241963988 + AT_rich Low_complexity Low_complexity 1 21 0 2354 74 0 7 chr1 40229770 40230068 -241963596 + AluY SINE Alu 1 296 -15 529 278 13 20 chr1 40230155 40230306 -241963358 + MIR SINE MIR 2 151 -111 1089 197 0 122 chr1 40230358 40230521 -241963143 - AluSp SINE Alu -55 258 145 5548 23 3 0 chr1 40230521 40231125 -241962539 - L1PA3 LINE L1 0 6155 5550 1089 197 0 122 chr1 40231125 40231255 -241962409 - AluSp SINE Alu -168 145 1 452 110 0 0 chr1 40231257 40231330 -241962334 - L1MCa LINE L1 -4108 2318 2246 514 153 24 65 chr1 40231351 40231475 -241962189 + MIR SINE MIR 143 261 -1 2501 74 0 6 chr1 40231658 40231970 -241961694 - AluY SINE Alu -1 310 1 2340 95 0 0 chr1 40231971 40232267 -241961397 - AluSx SINE Alu -16 296 1 1839 182 3 13 chr1 40232494 40232807 -241960857 + AluJb SINE Alu 1 310 -2 273 267 86 29 chr1 40232837 40232942 -241960722 + L1ME LINE L1 5456 5566 -555 633 108 21 0 chr1 40232959 40233052 -241960612 - AluJ/FLAM SINE Alu -216 96 2 1934 167 113 34 chr1 40233058 40233445 -241960219 - L1MCa LINE L1 -4112 2314 1872 917 174 23 12 chr1 40233445 40233617 -241960047 - FAM SINE Alu -1 174 1 1934 167 113 34 chr1 40233617 40233761 -241959903 - L1MCa LINE L1 -4554 1872 1741 3943 145 39 72 chr1 40233852 40234666 -241958998 - L1MB3 LINE L1 -72 6111 5323 1615 162 42 35 chr1 40234666 40234950 -241958714 - AluJo SINE Alu -22 290 5 1991 117 0 86 chr1 40234983 40235117 -241958547 + AluSx SINE Alu 2 146 -166 2264 97 0 31 chr1 40235117 40235437 -241958227 + AluSq SINE Alu 1 310 -3 1991 117 0 86 chr1 40235437 40235627 -241958037 + AluSx SINE Alu 146 298 -14 1825 146 13 23 chr1 40235632 40235933 -241957731 + AluJb SINE Alu 1 298 -14 518 72 0 60 chr1 40236828 40236911 -241956753 - MER51A LTR ERV1 -71 563 486 1288 152 0 10 chr1 40237485 40237682 -241955982 + AluJb SINE Alu 95 289 -23 208 268 18 0 chr1 40237769 40237825 -241955839 + MIR3 SINE MIR 144 200 -8 2601 56 0 3 chr1 40238025 40238328 -241955336 + AluY SINE Alu 1 302 -9 236 284 102 15 chr1 40238598 40238795 -241954869 - L1M4 LINE L1 -3371 2775 2562 2040 109 14 7 chr1 40238958 40239270 -241954394 - AluSq SINE Alu 0 314 1 2095 118 3 7 chr1 40239512 40239809 -241953855 + AluSx SINE Alu 1 296 -16 2433 81 0 3 chr1 40240520 40240829 -241952835 - AluY SINE Alu -3 308 1 2441 86 0 0 chr1 40241488 40241791 -241951873 + AluSc SINE Alu 1 303 -6 777 198 0 0 chr1 40241804 40241920 -241951744 - FLAM_A SINE Alu -17 116 1 215 0 67 0 chr1 40242017 40242047 -241951617 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2373 102 0 0 chr1 40243065 40243369 -241950295 + AluSx SINE Alu 1 304 -8 2584 65 0 0 chr1 40243505 40243815 -241949849 - AluY SINE Alu -1 310 1 727 229 43 16 chr1 40243992 40244180 -241949484 + MIR SINE MIR 65 257 -5 21 0 0 0 chr1 40244206 40244227 -241949437 + AT_rich Low_complexity Low_complexity 1 21 0 189 250 15 44 chr1 40244286 40244354 -241949310 - MIR SINE MIR -38 224 159 2004 150 13 0 chr1 40244359 40244659 -241949005 - AluSx SINE Alu -8 304 1 359 302 180 6 chr1 40245120 40245292 -241948372 + MIR SINE MIR 52 253 -9 24 0 0 0 chr1 40245426 40245450 -241948214 + AT_rich Low_complexity Low_complexity 1 24 0 582 155 0 0 chr1 40246168 40246252 -241947412 - FLAM_A SINE Alu -39 103 20 1879 159 7 17 chr1 40246337 40246638 -241947026 + AluJb SINE Alu 1 298 -14 2066 106 3 60 chr1 40246663 40247016 -241946648 - AluSx SINE Alu 0 312 1 3630 169 19 28 chr1 40247418 40247504 -241946160 + L1MA5 LINE L1 4 89 -7079 2160 123 7 0 chr1 40247504 40247796 -241945868 - AluSx SINE Alu -18 294 1 1932 131 0 81 chr1 40247796 40248117 -241945547 - AluSq SINE Alu -18 295 1 3630 169 19 28 chr1 40248117 40248662 -241945002 + L1MA5 LINE L1 87 630 -6538 1319 96 0 17 chr1 40248684 40248862 -241944802 + AluSx SINE Alu 1 175 -137 300 89 0 54 chr1 40248862 40248918 -241944746 + FAM SINE Alu 127 179 0 922 213 53 31 chr1 40248937 40249162 -241944502 + L1MA5 LINE L1 684 913 -6255 4062 160 47 117 chr1 40249188 40249237 -241944427 + L1MA5 LINE L1 2121 2172 -4996 2159 104 7 0 chr1 40249237 40249525 -241944139 + AluSp SINE Alu 1 290 -23 4062 160 47 117 chr1 40249525 40249872 -241943792 + L1MA5 LINE L1 2172 2541 -4627 1952 142 7 7 chr1 40249872 40250168 -241943496 + AluJb SINE Alu 1 296 -16 4062 160 47 117 chr1 40250168 40250466 -241943198 + L1MA5 LINE L1 2541 2858 -4310 621 156 0 0 chr1 40250466 40250556 -241943108 + FRAM SINE Alu 55 144 -32 264 30 0 0 chr1 40250556 40250589 -241943075 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 4062 160 47 117 chr1 40250589 40250987 -241942677 + L1MA5 LINE L1 2856 3223 -3945 1491 152 7 65 chr1 40250991 40251281 -241942383 - AluJo SINE Alu -39 273 1 1608 125 146 20 chr1 40251297 40251512 -241942152 + L1PA16 LINE L1 5816 6079 -87 2361 109 0 0 chr1 40251512 40251816 -241941848 + AluSc SINE Alu 1 304 -5 1608 125 146 20 chr1 40251816 40251895 -241941769 + L1PA16 LINE L1 6079 6147 -19 2925 186 5 18 chr1 40251904 40252475 -241941189 + L1MA5 LINE L1 3229 3792 -3375 2195 120 7 0 chr1 40252478 40252770 -241940894 + AluSx SINE Alu 1 294 -18 2370 90 7 7 chr1 40252785 40253085 -241940579 + AluSx SINE Alu 2 301 -11 340 78 0 0 chr1 40253090 40253141 -241940523 + (TTTTG)n Simple_repeat Simple_repeat 3 155 0 1278 189 145 8 chr1 40253141 40253389 -241940275 - AluJb SINE Alu -30 282 1 795 111 0 0 chr1 40253409 40253508 -241940156 - AluS SINE Alu -213 100 2 992 173 0 16 chr1 40253521 40253712 -241939952 + L1MA5 LINE L1 3874 4061 -3106 1495 181 98 0 chr1 40253713 40253979 -241939685 + AluJo SINE Alu 1 292 -20 5406 134 72 4 chr1 40253983 40254962 -241938702 + L1MA5 LINE L1 6275 7319 -2 1491 129 9 0 chr1 40255017 40255227 -241938437 + AluJb SINE Alu 14 225 -87 189 0 0 0 chr1 40255237 40255258 -241938406 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 300 220 130 10 chr1 40255378 40255478 -241938186 + MER103 DNA DNA 16 127 -39 1959 147 16 3 chr1 40255543 40255849 -241937815 - AluSg SINE Alu 0 310 1 1671 153 3 93 chr1 40255851 40256020 -241937644 - AluJo SINE Alu -9 303 177 1869 79 9 0 chr1 40256020 40256249 -241937415 - AluSc SINE Alu -6 303 73 1671 153 3 93 chr1 40256249 40256412 -241937252 - AluJo SINE Alu -135 177 1 1664 168 0 11 chr1 40256526 40256817 -241936847 - AluJo SINE Alu 0 321 34 2015 157 0 3 chr1 40256879 40257178 -241936486 + AluSx SINE Alu 7 304 -8 488 225 106 12 chr1 40257671 40257831 -241935833 + L1MC5 LINE L1 7737 7911 -50 219 218 0 0 chr1 40258838 40258893 -241934771 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2552 81 0 0 chr1 40259005 40259314 -241934350 - AluSc SINE Alu 0 309 1 186 209 0 0 chr1 40259613 40259656 -241934008 + (TA)n Simple_repeat Simple_repeat 2 44 0 2255 112 10 0 chr1 40259969 40260263 -241933401 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr1 40261664 40261695 -241931969 + AT_rich Low_complexity Low_complexity 1 31 0 219 211 0 0 chr1 40263458 40263496 -241930168 + (TG)n Simple_repeat Simple_repeat 2 39 0 1338 98 0 11 chr1 40264434 40264608 -241929056 - AluSg/x SINE Alu -9 303 132 23 33 0 0 chr1 40265936 40265966 -241927698 + AT_rich Low_complexity Low_complexity 1 30 0 1390 183 21 8 chr1 40266079 40266320 -241927344 - AluJo SINE Alu -68 244 1 2459 90 0 0 chr1 40266372 40266682 -241926982 + AluSq SINE Alu 1 310 -3 2314 92 0 13 chr1 40267157 40267460 -241926204 + AluSg SINE Alu 1 299 -11 2442 89 0 0 chr1 40267602 40267905 -241925759 + AluSc SINE Alu 1 303 -6 1212 111 0 0 chr1 40268095 40268248 -241925416 + AluSq SINE Alu 1 153 -160 641 74 0 0 chr1 40268248 40268329 -241925335 + AluSg/x SINE Alu 214 294 -15 2426 79 3 22 chr1 40268553 40268871 -241924793 + AluSq SINE Alu 1 312 -1 1264 91 108 0 chr1 40269702 40269878 -241923786 + AluSg SINE Alu 1 195 -115 770 124 0 0 chr1 40270016 40270129 -241923535 + AluSg SINE Alu 196 308 -1 195 69 0 0 chr1 40270380 40270409 -241923255 + (CA)n Simple_repeat Simple_repeat 1 29 0 673 212 8 8 chr1 40270658 40270790 -241922874 + FLAM_A SINE Alu 1 132 -1 421 269 38 51 chr1 40271214 40271384 -241922280 + MIR3 SINE MIR 15 181 -69 1818 155 4 4 chr1 40271384 40271662 -241922002 - AluJo SINE Alu -18 294 17 2349 113 3 0 chr1 40272049 40272359 -241921305 + AluSq SINE Alu 1 311 -2 278 26 26 0 chr1 40273465 40273504 -241920160 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 326 307 173 6 chr1 40274857 40275026 -241918638 + MIR SINE MIR 38 242 -20 22 35 0 0 chr1 40275388 40275417 -241918247 + AT_rich Low_complexity Low_complexity 1 29 0 2413 97 0 3 chr1 40275418 40275727 -241917937 - AluSg SINE Alu -2 308 1 1594 181 47 7 chr1 40275739 40276016 -241917648 - AluJo SINE Alu -24 288 1 928 202 0 12 chr1 40276035 40276203 -241917461 + FRAM SINE Alu 1 158 -18 2231 97 7 3 chr1 40276344 40276642 -241917022 - AluSx SINE Alu -13 299 1 2129 128 0 0 chr1 40276925 40277231 -241916433 - AluSx SINE Alu 0 306 1 1782 145 10 56 chr1 40277291 40277594 -241916070 + AluJb SINE Alu 1 289 -23 1778 150 41 27 chr1 40277766 40278059 -241915605 + AluJb SINE Alu 1 297 -15 1083 75 8 0 chr1 40278268 40278401 -241915263 + AluSq/x SINE Alu 1 134 -178 630 88 0 118 chr1 40278450 40278473 -241915191 + AluSc SINE Alu 110 134 -175 2613 64 0 3 chr1 40278473 40278785 -241914879 + AluY SINE Alu 1 311 0 630 88 0 118 chr1 40278785 40278863 -241914801 + AluSc SINE Alu 134 199 -110 331 75 19 19 chr1 40278863 40278916 -241914748 - AluJb SINE Alu -171 131 79 637 111 0 0 chr1 40278916 40279006 -241914658 + AluSg/x SINE Alu 207 296 -14 242 176 29 0 chr1 40279617 40279685 -241913979 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1889 128 31 17 chr1 40279921 40280210 -241913454 + AluSx SINE Alu 1 293 -19 2232 95 16 7 chr1 40280218 40280524 -241913140 + AluSx SINE Alu 1 309 -3 2445 84 0 13 chr1 40281047 40281355 -241912309 + AluSx SINE Alu 1 304 -8 2094 137 3 3 chr1 40281622 40281921 -241911743 + AluSx SINE Alu 1 299 -13 2536 83 0 3 chr1 40281932 40282244 -241911420 + AluY SINE Alu 1 311 0 2200 104 7 0 chr1 40283879 40284157 -241909507 + AluSx SINE Alu 1 280 -32 213 108 0 0 chr1 40284160 40284197 -241909467 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 607 254 29 0 chr1 40284372 40284510 -241909154 + MIR SINE MIR 31 172 -90 247 289 115 10 chr1 40284660 40284764 -241908900 + MIR SINE MIR 114 228 -34 1027 121 0 0 chr1 40284860 40285035 -241908629 - AluSg/x SINE Alu 0 319 145 226 277 20 79 chr1 40285056 40285157 -241908507 - L3 LINE CR1 -852 725 631 22 0 0 0 chr1 40285230 40285252 -241908412 + AT_rich Low_complexity Low_complexity 1 22 0 2149 118 3 0 chr1 40285255 40285542 -241908122 - AluSx SINE Alu -24 288 1 929 125 0 7 chr1 40285542 40285678 -241907986 - AluJo SINE Alu -177 135 1 540 220 0 0 chr1 40285714 40285814 -241907850 - FLAM_A SINE Alu -41 101 2 1689 158 10 20 chr1 40285867 40286165 -241907499 + AluJb SINE Alu 1 295 -17 26 0 0 0 chr1 40286643 40286669 -241906995 + GC_rich Low_complexity Low_complexity 1 26 0 204 40 0 0 chr1 40287747 40287772 -241905892 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2356 98 0 16 chr1 40287777 40288094 -241905570 - AluSx SINE Alu 0 312 1 465 291 40 0 chr1 40288430 40288578 -241905086 - MER117 DNA MER1_type -39 158 5 278 149 0 0 chr1 40291640 40291687 -241901977 - Tigger5 DNA MER2_type -35 2288 2242 250 164 0 36 chr1 40291685 40291740 -241901924 + Tigger5 DNA MER2_type 2266 2318 -5 * 348 167 69 14 chr1 40291743 40291815 -241901849 - Tigger5 DNA MER2_type -2247 76 1 272 314 177 11 chr1 40291866 40292137 -241901527 + L2 LINE L2 2660 2975 -339 226 281 113 18 chr1 40292206 40292427 -241901237 - L2 LINE L2 -1137 2177 1936 840 170 0 22 chr1 40292451 40292586 -241901078 + FLAM_A SINE Alu 2 133 0 1539 157 52 30 chr1 40292849 40293154 -241900510 + AluJb SINE Alu 1 312 0 2121 145 7 0 chr1 40293163 40293473 -241900191 + AluJo SINE Alu 1 312 0 599 302 33 58 chr1 40295040 40295282 -241898382 - MIR SINE MIR -13 249 14 230 183 366 0 chr1 40296710 40296781 -241896883 - FLAM_A SINE Alu -12 121 25 192 97 0 0 chr1 40302457 40302488 -241891176 + (CAG)n Simple_repeat Simple_repeat 1 31 0 433 291 8 0 chr1 40302913 40303030 -241890634 - MIR SINE MIR -29 233 116 2253 95 26 7 chr1 40303162 40303468 -241890196 - AluSx SINE Alu 0 312 1 184 282 127 0 chr1 40303786 40303857 -241889807 + MIR SINE MIR 20 99 -163 1301 161 64 115 chr1 40303873 40304037 -241889627 + L1MB8 LINE L1 5656 5827 -351 774 175 8 0 chr1 40304037 40304157 -241889507 + FLAM_A SINE Alu 1 121 -12 1301 161 64 115 chr1 40304157 40304171 -241889493 + L1MB8 LINE L1 5827 5840 -338 1557 143 70 18 chr1 40304171 40304443 -241889221 + AluJb SINE Alu 1 286 -26 1301 161 64 115 chr1 40304443 40304653 -241889011 + L1MB8 LINE L1 5840 6025 -153 997 136 0 7 chr1 40304653 40304800 -241888864 - AluJb SINE Alu -90 222 77 697 139 29 29 chr1 40304800 40304937 -241888727 + L1MB8 LINE L1 6033 6169 -9 2225 110 0 3 chr1 40304939 40305247 -241888417 - AluSx SINE Alu -5 307 1 1650 166 63 3 chr1 40305255 40305539 -241888125 - AluJb SINE Alu -11 301 1 2236 80 0 3 chr1 40305545 40305832 -241887832 - AluY SINE Alu -10 301 16 2195 115 0 16 chr1 40305845 40306158 -241887506 - AluSx SINE Alu -4 308 1 2122 125 0 0 chr1 40306186 40306482 -241887182 + AluSq SINE Alu 1 296 -17 2136 96 0 14 chr1 40306484 40306798 -241886866 + AluSc SINE Alu 1 309 0 2147 77 42 0 chr1 40306800 40307072 -241886592 + AluY SINE Alu 1 287 -24 201 39 0 0 chr1 40307072 40307098 -241886566 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2147 77 42 0 chr1 40307098 40307110 -241886554 + AluY SINE Alu 287 297 -14 314 316 0 0 chr1 40307484 40307560 -241886104 + MIR SINE MIR 53 128 -80 377 274 17 17 chr1 40307585 40307702 -241885962 - MIR SINE MIR -29 233 117 459 283 122 34 chr1 40307855 40307940 -241885724 - MIR SINE MIR -34 228 152 1828 162 10 16 chr1 40307940 40308254 -241885410 + AluJb SINE Alu 1 312 0 459 283 122 34 chr1 40308254 40308265 -241885399 - MIR SINE MIR -110 152 143 2083 95 37 0 chr1 40308265 40308561 -241885103 + AluSx SINE Alu 1 307 -5 459 283 122 34 chr1 40308561 40308668 -241884996 - MIR SINE MIR -119 143 6 306 256 105 60 chr1 40309258 40309391 -241884273 - MIR SINE MIR -28 234 96 1964 138 7 7 chr1 40309396 40309694 -241883970 + AluJb SINE Alu 1 298 -14 293 321 36 9 chr1 40310579 40310691 -241882973 + MIR3 SINE MIR 3 117 -91 443 268 0 0 chr1 40311721 40311818 -241881846 + MIR SINE MIR 48 144 -64 257 88 0 242 chr1 40311826 40311854 -241881810 + MER41A LTR ERV1 398 431 -123 1946 89 41 89 chr1 40311854 40312170 -241881494 - AluSc SINE Alu -8 301 1 257 88 0 242 chr1 40312170 40312195 -241881469 + MER41A LTR ERV1 431 424 -130 2428 64 0 10 chr1 40312195 40312506 -241881158 - AluY SINE Alu -3 308 1 257 88 0 242 chr1 40312506 40312542 -241881122 + MER41A LTR ERV1 423 466 -88 1783 125 0 84 chr1 40312746 40313066 -241880598 - AluSx SINE Alu -19 293 1 367 324 130 43 chr1 40313555 40313828 -241879836 + L2 LINE L2 1983 2311 -1003 1501 146 15 23 chr1 40313828 40314088 -241879576 - AluJo SINE Alu -16 296 39 367 324 130 43 chr1 40314088 40314259 -241879405 + L2 LINE L2 2311 2466 -848 2444 53 0 0 chr1 40314278 40314577 -241879087 - AluY SINE Alu -12 299 1 315 284 0 0 chr1 40314667 40314741 -241878923 - MER91A DNA MER1_type -121 75 2 223 269 0 30 chr1 40314850 40314917 -241878747 + L2 LINE L2 3201 3265 -7 520 304 65 0 chr1 40315013 40315181 -241878483 - MER5A DNA MER1_type 0 189 11 2376 73 0 3 chr1 40316311 40316611 -241877053 + AluY SINE Alu 1 299 -12 305 325 47 12 chr1 40316765 40316934 -241876730 + L2 LINE L2 2917 3091 -181 1810 139 21 10 chr1 40318059 40318347 -241875317 + AluJo SINE Alu 6 296 -16 290 331 50 8 chr1 40318911 40319032 -241874632 - L2 LINE L2 -224 3048 2923 1004 216 15 58 chr1 40319817 40320018 -241873646 - MIR SINE MIR 0 262 73 948 120 0 8 chr1 40320018 40320151 -241873513 + FLAM_C SINE Alu 2 133 0 1004 216 15 58 chr1 40320151 40320208 -241873456 - MIR SINE MIR -189 73 15 422 344 68 10 chr1 40320366 40320558 -241873106 - MIR SINE MIR -30 232 30 311 259 170 0 chr1 40321178 40321290 -241872374 + MIR SINE MIR 16 146 -116 372 329 58 7 chr1 40321299 40321436 -241872228 - MIR SINE MIR -71 191 48 364 260 10 10 chr1 40321470 40321570 -241872094 + MIR SINE MIR 162 261 -1 306 310 70 0 chr1 40322155 40322274 -241871390 - MIR SINE MIR -63 145 17 1779 120 19 0 chr1 40322483 40322742 -241870922 + AluSx SINE Alu 38 301 -11 2272 107 0 0 chr1 40322742 40323051 -241870613 + AluSg SINE Alu 1 309 -1 258 32 0 0 chr1 40323052 40323083 -241870581 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2278 101 0 0 chr1 40323083 40323380 -241870284 + AluSx SINE Alu 3 299 -13 2222 113 0 0 chr1 40323388 40323688 -241869976 + AluSg SINE Alu 6 305 -5 1981 106 50 10 chr1 40323713 40324014 -241869650 + AluSq SINE Alu 1 313 0 252 333 114 0 chr1 40324074 40324188 -241869476 + MIR SINE MIR 19 145 -63 183 245 174 31 chr1 40324375 40324473 -241869191 + MIR3 SINE MIR 5 116 -92 287 219 68 0 chr1 40324477 40324550 -241869114 - MIR SINE MIR -83 179 102 195 319 44 48 chr1 40324837 40325107 -241868557 + L2 LINE L2 2475 2743 -571 213 257 28 28 chr1 40325803 40325947 -241867717 + (TG)n Simple_repeat Simple_repeat 2 145 0 236 286 99 0 chr1 40326950 40327041 -241866623 - MIR SINE MIR -79 183 84 38 85 0 0 chr1 40327333 40327427 -241866237 + GC_rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr1 40327564 40327594 -241866070 + GC_rich Low_complexity Low_complexity 1 30 0 276 325 24 0 chr1 40327990 40328113 -241865551 - L2 LINE L2 -553 2761 2636 753 243 4 0 chr1 40328740 40329220 -241864444 + (TG)n Simple_repeat Simple_repeat 1 482 0 677 247 134 0 chr1 40329838 40330024 -241863640 + MIR SINE MIR 2 212 -50 373 260 9 49 chr1 40330650 40330795 -241862869 + MIR3 SINE MIR 45 186 -22 404 314 58 7 chr1 40330888 40331025 -241862639 + MIR SINE MIR 8 151 -111 1047 233 9 18 chr1 40331045 40331264 -241862400 - MIR SINE MIR -10 252 36 2260 85 3 0 chr1 40331316 40331610 -241862054 + AluSc SINE Alu 15 309 0 2192 68 14 0 chr1 40331621 40331922 -241861742 + AluSp SINE Alu 1 305 0 905 191 0 0 chr1 40331922 40332162 -241861502 + AluJo/FRAM SINE Alu 137 376 0 2129 123 0 0 chr1 40332164 40332464 -241861200 + AluSx SINE Alu 1 300 -12 485 231 168 0 chr1 40333295 40333438 -241860226 + MER45A DNA AcHobo 1 167 -11 1482 151 171 0 chr1 40333520 40333778 -241859886 + AluJb SINE Alu 1 302 0 2100 119 0 0 chr1 40333788 40334097 -241859567 - AluSp SINE Alu 0 309 1 381 243 37 28 chr1 40334097 40334204 -241859460 - L2 LINE L2 -12 3301 3194 585 280 91 6 chr1 40334277 40334512 -241859152 - MIR SINE MIR 0 262 4 195 262 272 0 chr1 40334521 40334624 -241859040 + L2 LINE L2 3142 3272 0 330 164 0 0 chr1 40434626 40434681 -241758983 - Alu SINE Alu -244 55 1 236 115 0 131 chr1 40434682 40434706 -241758958 + MER41B LTR ERV1 495 521 -114 2428 64 0 10 chr1 40434706 40435017 -241758647 - AluY SINE Alu -3 308 1 236 115 0 131 chr1 40435017 40435053 -241758611 + MER41B LTR ERV1 521 547 -88 1783 125 0 84 chr1 40435257 40435577 -241758087 - AluSx SINE Alu -19 293 1 367 324 130 43 chr1 40436066 40436339 -241757325 + L2 LINE L2 1983 2311 -1003 1501 146 15 23 chr1 40436339 40436599 -241757065 - AluJo SINE Alu -16 296 39 367 324 130 43 chr1 40436599 40436770 -241756894 + L2 LINE L2 2311 2466 -848 2444 53 0 0 chr1 40436789 40437088 -241756576 - AluY SINE Alu -12 299 1 315 284 0 0 chr1 40437178 40437252 -241756412 - MER91A DNA MER1_type -121 75 2 223 269 0 30 chr1 40437361 40437428 -241756236 + L2 LINE L2 3201 3265 -7 520 304 65 0 chr1 40437524 40437692 -241755972 - MER5A DNA MER1_type 0 189 11 2376 73 0 3 chr1 40438822 40439122 -241754542 + AluY SINE Alu 1 299 -12 305 325 47 12 chr1 40439276 40439445 -241754219 + L2 LINE L2 2917 3091 -181 1810 139 21 10 chr1 40440570 40440858 -241752806 + AluJo SINE Alu 6 296 -16 290 331 50 8 chr1 40441422 40441543 -241752121 - L2 LINE L2 -224 3048 2923 1004 216 15 58 chr1 40442328 40442529 -241751135 - MIR SINE MIR 0 262 73 948 120 0 8 chr1 40442529 40442662 -241751002 + FLAM_C SINE Alu 2 133 0 1004 216 15 58 chr1 40442662 40442719 -241750945 - MIR SINE MIR -189 73 15 422 344 68 10 chr1 40442877 40443069 -241750595 - MIR SINE MIR -30 232 30 311 259 170 0 chr1 40443689 40443801 -241749863 + MIR SINE MIR 16 146 -116 372 329 58 7 chr1 40443810 40443947 -241749717 - MIR SINE MIR -71 191 48 364 260 10 10 chr1 40443981 40444081 -241749583 + MIR SINE MIR 162 261 -1 306 310 70 0 chr1 40444666 40444785 -241748879 - MIR SINE MIR -63 145 17 1779 120 19 0 chr1 40444994 40445253 -241748411 + AluSx SINE Alu 38 301 -11 2272 107 0 0 chr1 40445253 40445562 -241748102 + AluSg SINE Alu 1 309 -1 258 32 0 0 chr1 40445563 40445594 -241748070 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 2278 101 0 0 chr1 40445594 40445891 -241747773 + AluSx SINE Alu 3 299 -13 2206 117 0 0 chr1 40445899 40446199 -241747465 + AluSg SINE Alu 6 305 -5 1981 106 50 10 chr1 40446224 40446525 -241747139 + AluSq SINE Alu 1 313 0 252 333 114 0 chr1 40446585 40446699 -241746965 + MIR SINE MIR 19 145 -63 183 245 174 31 chr1 40446886 40446984 -241746680 + MIR3 SINE MIR 5 116 -92 287 219 68 0 chr1 40446988 40447061 -241746603 - MIR SINE MIR -83 179 102 195 319 44 48 chr1 40447348 40447618 -241746046 + L2 LINE L2 2475 2743 -571 213 257 28 28 chr1 40448314 40448458 -241745206 + (TG)n Simple_repeat Simple_repeat 2 145 0 236 286 99 0 chr1 40449461 40449552 -241744112 - MIR SINE MIR -79 183 84 38 85 0 0 chr1 40449844 40449938 -241743726 + GC_rich Low_complexity Low_complexity 1 94 0 23 33 0 0 chr1 40450075 40450105 -241743559 + GC_rich Low_complexity Low_complexity 1 30 0 276 325 24 0 chr1 40450501 40450624 -241743040 - L2 LINE L2 -553 2761 2636 792 198 0 0 chr1 40451251 40451508 -241742156 + (TG)n Simple_repeat Simple_repeat 1 257 0 309 247 12 35 chr1 40451531 40451701 -241741963 + (TG)n Simple_repeat Simple_repeat 1 166 0 1985 110 65 0 chr1 40452059 40452350 -241741314 + AluSq SINE Alu 1 310 -3 574 268 102 21 chr1 40452745 40452980 -241740684 + L2 LINE L2 3011 3264 -49 408 256 136 37 chr1 40452993 40453148 -241740516 - MIR SINE MIR -51 211 32 754 157 0 0 chr1 40453148 40453263 -241740401 - FLAM_C SINE Alu -18 115 1 408 256 136 37 chr1 40453263 40453298 -241740366 - MIR SINE MIR -230 32 2 200 321 62 25 chr1 40453298 40453358 -241740306 + L2 LINE L2 3251 3313 0 182 386 0 0 chr1 40453361 40453431 -241740233 - L2 LINE L2 -91 3222 3153 21 36 0 0 chr1 40454286 40454314 -241739350 + AT_rich Low_complexity Low_complexity 1 28 0 2277 119 0 3 chr1 40454314 40454624 -241739040 - AluY SINE Alu -2 309 1 1982 80 3 142 chr1 40454624 40454975 -241738689 - AluSx SINE Alu -10 302 1 3124 124 53 47 chr1 40454975 40455554 -241738110 - Tigger1 DNA MER2_type -1810 608 26 184 378 27 45 chr1 40455844 40455955 -241737709 + L2 LINE L2 3077 3185 -87 420 292 65 27 chr1 40455957 40456142 -241737522 - L2 LINE L2 -5 3308 3117 343 200 0 0 chr1 40456172 40456232 -241737432 + MER58B DNA MER1_type 1 60 -281 1587 159 73 10 chr1 40456248 40456537 -241737127 - AluSg SINE Alu -2 308 2 2002 92 85 0 chr1 40456538 40456820 -241736844 - AluSx SINE Alu -6 306 1 915 164 0 0 chr1 40456821 40456961 -241736703 - FLAM_C SINE Alu -3 140 1 728 167 203 40 chr1 40456963 40457009 -241736655 + MER58B DNA MER1_type 79 116 -2304 2470 83 3 0 chr1 40457009 40457309 -241736355 + AluSp SINE Alu 1 301 -12 728 167 203 40 chr1 40457309 40457484 -241736180 + MER58B DNA MER1_type 116 336 -5 991 307 55 67 chr1 40457515 40457811 -241735853 - L2 LINE L2 -211 3061 2763 2434 58 19 13 chr1 40457811 40458119 -241735545 - AluY SINE Alu -1 310 1 991 307 55 67 chr1 40458119 40458170 -241735494 - L2 LINE L2 -509 2763 2713 2195 125 6 6 chr1 40458170 40458481 -241735183 - AluSx SINE Alu -1 311 1 991 307 55 67 chr1 40458481 40458763 -241734901 - L2 LINE L2 -559 2713 2430 1407 16 0 27 chr1 40458991 40459176 -241734488 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2402 93 10 3 chr1 40459182 40459493 -241734171 - AluSq SINE Alu 0 313 1 201 373 24 24 chr1 40459502 40459628 -241734036 + L2 LINE L2 2421 2546 -768 186 175 140 18 chr1 40459672 40459729 -241733935 + MIR SINE MIR 198 261 -1 180 268 75 153 chr1 40459781 40460102 -241733562 + L2 LINE L2 2682 2977 -337 2281 114 3 0 chr1 40460338 40460646 -241733018 + AluSx SINE Alu 2 310 -2 991 275 106 44 chr1 40460667 40461100 -241732564 + MLT1K LTR MaLR 125 584 -4 231 337 26 95 chr1 40461452 40461496 -241732168 - MER5B DNA MER1_type -1 177 132 1671 177 7 23 chr1 40461496 40461668 -241731996 - AluJo SINE Alu -7 305 139 1721 171 0 40 chr1 40461668 40461989 -241731675 - AluJo SINE Alu -2 310 3 1671 177 7 23 chr1 40461989 40462126 -241731538 - AluJo SINE Alu -173 139 1 231 337 26 95 chr1 40462126 40462271 -241731393 - MER5B DNA MER1_type -46 132 1 338 0 0 23 chr1 40462310 40462353 -241731311 + (TA)n Simple_repeat Simple_repeat 1 42 0 2247 112 3 7 chr1 40462354 40462650 -241731014 - AluSx SINE Alu -17 295 1 2533 69 0 0 chr1 40462666 40462972 -241730692 - AluY SINE Alu -5 306 1 1339 161 0 27 chr1 40463496 40463720 -241729944 + MER20 DNA MER1_type 1 218 -1 2096 148 6 3 chr1 40463779 40464090 -241729574 + AluJo SINE Alu 1 312 0 2076 143 0 3 chr1 40464090 40464390 -241729274 + AluSx SINE Alu 1 299 -13 425 271 25 25 chr1 40464637 40464755 -241728909 + MIR SINE MIR 20 137 -125 2260 116 0 0 chr1 40464964 40465267 -241728397 + AluSx SINE Alu 1 303 -9 1805 108 12 12 chr1 40465998 40466239 -241727425 + AluSq SINE Alu 1 241 -72 1932 104 121 32 chr1 40466239 40466585 -241727079 - MER51B LTR ERV1 0 377 1 307 140 0 0 chr1 40466585 40466642 -241727022 + AluSq SINE Alu 238 294 -8 2249 98 0 7 chr1 40466725 40467020 -241726644 - AluSc SINE Alu -16 293 1 1162 128 18 0 chr1 40467020 40467184 -241726480 - AluSg/x SINE Alu -7 305 139 2226 127 7 0 chr1 40467188 40467487 -241726177 - AluSx SINE Alu -11 301 1 877 245 60 9 chr1 40467487 40467720 -241725944 - MER63B DNA MER1_type -191 245 1 2516 64 0 3 chr1 40467827 40468124 -241725540 - AluY SINE Alu -13 298 3 240 133 222 0 chr1 40468309 40468354 -241725310 + L2 LINE L2 3193 3247 -66 824 181 8 106 chr1 40468521 40468758 -241724906 + MER20 DNA MER1_type 6 219 0 565 156 167 0 chr1 40469794 40469890 -241723774 + FLAM_C SINE Alu 2 113 -30 1751 126 11 7 chr1 40469929 40470199 -241723465 + AluSx SINE Alu 38 308 -4 1004 73 0 8 chr1 40470203 40470327 -241723337 + AluSq/x SINE Alu 24 146 -166 2212 121 0 3 chr1 40470328 40470634 -241723030 + AluSc SINE Alu 3 307 -2 22 0 0 0 chr1 40470634 40470656 -241723008 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 40470759 40470779 -241722885 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2254 109 0 0 chr1 40470792 40471086 -241722578 - AluSq SINE Alu -19 294 1 1964 117 8 0 chr1 40471086 40471351 -241722313 - AluSx SINE Alu -11 301 35 1772 98 0 0 chr1 40471382 40471607 -241722057 + AluSg/x SINE Alu 83 307 -3 1120 149 0 23 chr1 40471607 40471782 -241721882 + AluSc SINE Alu 139 309 0 801 162 56 22 chr1 40471849 40472028 -241721636 - MER53 DNA DNA -2 187 3 1836 157 3 31 chr1 40472087 40472405 -241721259 - AluJo SINE Alu -3 309 1 343 323 104 10 chr1 40472437 40472629 -241721035 + L2 LINE L2 2612 2821 -493 497 302 207 12 chr1 40472780 40473267 -241720397 - L2 LINE L2 -27 3245 2661 2089 110 3 45 chr1 40473446 40473754 -241719910 - AluSq SINE Alu -18 295 1 2148 116 34 0 chr1 40473814 40474108 -241719556 + AluSq SINE Alu 1 304 -9 460 197 24 231 chr1 40474115 40474409 -241719255 - MIR SINE MIR -16 246 14 1813 142 7 0 chr1 40474521 40474795 -241718869 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr1 40474797 40474823 -241718841 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 290 276 112 45 chr1 40475292 40475426 -241718238 - MER5A DNA MER1_type 0 189 47 316 119 15 30 chr1 40475717 40475784 -241717880 + AluSp/q SINE Alu 237 302 -1 460 197 24 231 chr1 40475794 40476088 -241717576 - MIR SINE MIR -16 246 14 2192 123 0 3 chr1 40476200 40476510 -241717154 + AluSx SINE Alu 1 309 -3 2068 95 0 4 chr1 40476563 40476827 -241716837 - AluSx SINE Alu -22 290 28 350 165 13 0 chr1 40476882 40476961 -241716703 + L1MB3 LINE L1 4976 5055 -1091 2345 101 87 88 chr1 40476994 40477834 -241715830 - pTR5 LTR ERV1 0 2438 66 619 177 15 15 chr1 40477808 40477938 -241715726 + pTR5 LTR ERV1 1181 1310 -1128 * 641 162 6 75 chr1 40477910 40478083 -241715581 - pTR5 LTR ERV1 -1535 903 743 1953 130 0 0 chr1 40478083 40478352 -241715312 + AluJb SINE Alu 31 299 -13 2510 73 7 0 chr1 40478376 40478679 -241714985 + AluY SINE Alu 1 305 -6 3915 147 14 29 chr1 40478680 40478915 -241714749 + L1MB3 LINE L1 5193 5430 -753 2242 112 0 10 chr1 40478915 40479218 -241714446 + AluSg SINE Alu 1 300 -10 3915 147 14 29 chr1 40479218 40479760 -241713904 + L1MB3 LINE L1 5430 5959 -224 1986 93 0 0 chr1 40479760 40480008 -241713656 + AluSx SINE Alu 42 289 -23 1177 218 3 11 chr1 40480240 40480554 -241713110 + AluY SINE Alu 1 312 0 1698 181 24 11 chr1 40480775 40481062 -241712602 - AluJo SINE Alu -21 291 1 1030 144 60 74 chr1 40481062 40481165 -241712499 - L1M4 LINE L1 -681 5493 5390 2717 42 0 3 chr1 40481165 40481472 -241712192 - AluY SINE Alu -5 306 1 1030 144 60 74 chr1 40481472 40481659 -241712005 - L1M4 LINE L1 -784 5390 5223 1929 93 31 4 chr1 40481659 40481916 -241711748 - AluSg SINE Alu -11 299 36 1030 144 60 74 chr1 40481916 40482033 -241711631 - L1M4 LINE L1 -951 5223 5106 1968 120 0 4 chr1 40482217 40482484 -241711180 + AluSx SINE Alu 28 293 -19 2282 92 10 0 chr1 40482628 40482753 -241710911 + AluY SINE Alu 1 123 -188 189 0 0 0 chr1 40482753 40482774 -241710890 + (CA)n Simple_repeat Simple_repeat 2 22 0 2282 92 10 0 chr1 40482774 40482941 -241710723 + AluY SINE Alu 123 296 -15 2533 74 0 0 chr1 40482943 40483240 -241710424 + AluY SINE Alu 3 299 -12 439 131 0 60 chr1 40483240 40483312 -241710352 - AluSp/q SINE Alu -8 305 235 1296 189 59 64 chr1 40483312 40483375 -241710289 + L1M4 LINE L1 4891 4953 -1193 1842 171 11 0 chr1 40483375 40483662 -241710002 + AluJo SINE Alu 1 290 -22 1296 189 59 64 chr1 40483662 40483880 -241709784 + L1M4 LINE L1 4953 5171 -975 2493 74 3 0 chr1 40483880 40484178 -241709486 + AluY SINE Alu 1 299 -12 1296 189 59 64 chr1 40484178 40484211 -241709453 + L1M4 LINE L1 5171 5203 -943 2206 119 0 19 chr1 40484211 40484529 -241709135 + AluSx SINE Alu 1 312 0 1296 189 59 64 chr1 40484529 40484587 -241709077 + L1M4 LINE L1 5203 5263 -883 2342 114 0 6 chr1 40484590 40484905 -241708759 - AluSq SINE Alu 0 313 1 422 109 0 0 chr1 40484910 40484974 -241708690 - AluSq SINE Alu -10 300 237 1194 136 0 0 chr1 40484974 40485136 -241708528 - AluSq SINE Alu -151 162 1 961 184 0 12 chr1 40485140 40485308 -241708356 - AluJb SINE Alu -10 302 137 1782 150 0 24 chr1 40485403 40485690 -241707974 - AluSq SINE Alu -20 293 14 1343 169 37 7 chr1 40485700 40485973 -241707691 - AluSq SINE Alu -12 301 21 7064 159 17 17 chr1 40486196 40486714 -241706950 - HERVFH21 LTR ERV1 -1468 5061 4545 2434 77 0 0 chr1 40486714 40487012 -241706652 + AluY SINE Alu 1 298 -13 7064 159 17 17 chr1 40487012 40488619 -241705045 - HERVFH21 LTR ERV1 -1984 4545 2868 3084 225 24 16 chr1 40488615 40489852 -241703812 - HERVFH21 LTR ERV1 -4686 900 74 * 1437 170 146 88 chr1 40489893 40490304 -241703360 - LTR21B LTR ERV1 -3 435 1 616 260 164 26 chr1 40490304 40490573 -241703091 + L2 LINE L2 2935 3240 -73 819 222 46 0 chr1 40490684 40490878 -241702786 + MER20B DNA MER1_type 219 421 -362 369 209 80 49 chr1 40490949 40491112 -241702552 + MER20B DNA MER1_type 610 777 -6 278 321 134 19 chr1 40491138 40491347 -241702317 + MIR SINE MIR 13 245 -17 2023 158 0 16 chr1 40491360 40491676 -241701988 - AluJb SINE Alu -1 311 1 280 281 35 26 chr1 40492059 40492173 -241701491 + (CAGG)n Simple_repeat Simple_repeat 1 115 0 777 282 232 24 chr1 40493038 40493635 -241700029 + L2 LINE L2 2086 2557 -756 2434 93 6 0 chr1 40493635 40493946 -241699718 + AluSp SINE Alu 1 313 0 777 282 232 24 chr1 40493946 40494304 -241699360 + L2 LINE L2 2557 3251 -62 2564 74 0 0 chr1 40494321 40494631 -241699033 + AluY SINE Alu 1 310 -1 1500 163 25 50 chr1 40494633 40494834 -241698830 + MER2 DNA MER2_type 6 198 -147 1861 138 35 17 chr1 40494834 40495123 -241698541 + AluJb SINE Alu 1 294 -18 1500 163 25 50 chr1 40495123 40495241 -241698423 + MER2 DNA MER2_type 198 317 -28 286 320 160 19 chr1 40496124 40496280 -241697384 + MIR SINE MIR 14 191 -71 2071 131 0 10 chr1 40496383 40496674 -241696990 + AluSg SINE Alu 23 310 0 624 316 29 4 chr1 40496682 40496960 -241696704 + L1M4 LINE L1 4068 4352 -1794 2502 62 3 10 chr1 40497050 40497355 -241696309 + AluY SINE Alu 1 303 -8 1710 171 7 17 chr1 40497378 40497677 -241695987 + AluJo SINE Alu 1 296 -16 2300 71 3 14 chr1 40497833 40498155 -241695509 + AluY SINE Alu 1 311 0 2196 115 3 10 chr1 40498166 40498480 -241695184 + AluSx SINE Alu 1 312 0 2137 125 10 7 chr1 40498746 40499043 -241694621 - AluSx SINE Alu -14 298 1 2577 80 0 0 chr1 40499121 40499432 -241694232 + AluY SINE Alu 1 311 0 937 98 8 0 chr1 40499888 40500010 -241693654 - AluSq/x SINE Alu -189 124 2 1551 126 20 31 chr1 40500598 40500852 -241692812 - AluJo SINE Alu -52 260 10 319 186 39 69 chr1 40500987 40501089 -241692575 + L1MC5 LINE L1 7831 7929 -32 1835 141 0 21 chr1 40501091 40501375 -241692289 + AluJo SINE Alu 1 278 -34 201 121 0 0 chr1 40501375 40501408 -241692256 + (CA)n Simple_repeat Simple_repeat 2 34 0 2302 96 3 10 chr1 40501556 40501859 -241691805 - AluSp SINE Alu -12 301 1 2250 120 0 0 chr1 40502266 40502558 -241691106 - AluSg SINE Alu -16 294 3 2289 106 10 10 chr1 40502560 40502872 -241690792 - AluSx SINE Alu 0 312 1 362 78 0 0 chr1 40502872 40502923 -241690741 - AluSg/x SINE Alu -166 134 84 1020 207 0 72 chr1 40502923 40503160 -241690504 - AluJo SINE Alu -92 220 1 268 319 99 11 chr1 40504004 40504095 -241689569 - L2 LINE L2 -1 3271 3173 3104 180 78 65 chr1 40504325 40504738 -241688926 + L1M4 LINE L1 3898 4304 -1842 2208 117 3 7 chr1 40504738 40505036 -241688628 + AluSx SINE Alu 1 297 -15 3104 180 78 65 chr1 40505036 40505056 -241688608 + L1M4 LINE L1 4304 4322 -1824 291 28 0 0 chr1 40505056 40505092 -241688572 + (CA)n Simple_repeat Simple_repeat 1 36 0 3104 180 78 65 chr1 40505092 40505601 -241688063 + L1M4 LINE L1 4322 4853 -1293 216 0 0 0 chr1 40505605 40505629 -241688035 + (T)n Simple_repeat Simple_repeat 1 24 0 607 122 26 95 chr1 40505914 40506103 -241687561 - SVA Other Other -553 833 658 2442 64 3 14 chr1 40506750 40507047 -241686617 - AluSg SINE Alu -16 294 1 2241 114 0 7 chr1 40507195 40507494 -241686170 - AluSx SINE Alu -13 299 3 181 167 71 24 chr1 40507664 40507706 -241685958 + L2 LINE L2 2730 2773 -541 692 221 73 29 chr1 40507960 40508164 -241685500 - MIR SINE MIR -19 243 31 1788 142 0 0 chr1 40508307 40508560 -241685104 - AluSx SINE Alu -59 253 1 2182 81 4 0 chr1 40508588 40508859 -241684805 + AluY SINE Alu 1 272 -39 275 294 56 0 chr1 40509125 40509251 -241684413 + L1M4 LINE L1 5008 5140 -1006 2346 67 3 7 chr1 40509290 40509587 -241684077 + AluY SINE Alu 12 307 -4 1666 162 56 3 chr1 40509592 40509876 -241683788 + AluJo SINE Alu 14 312 0 2353 113 0 0 chr1 40510153 40510455 -241683209 + AluSx SINE Alu 1 302 -10 495 60 0 0 chr1 40510580 40510647 -241683017 + (TA)n Simple_repeat Simple_repeat 2 68 0 2352 49 49 3 chr1 40510823 40511108 -241682556 - AluY SINE Alu -13 298 1 2067 196 22 78 chr1 40511359 40511937 -241681727 + MLT2B3 LTR ERVL 1 546 -8 239 135 0 19 chr1 40512138 40512190 -241681474 + L1MB4 LINE L1 6128 6178 -2 259 254 24 40 chr1 40512211 40512337 -241681327 + L1MC4 LINE L1 7918 8041 -1 1854 159 0 23 chr1 40512466 40512775 -241680889 + AluSx SINE Alu 1 302 -10 919 152 0 192 chr1 40512775 40512829 -241680835 + AluJo SINE Alu 83 146 -166 2035 85 103 0 chr1 40512829 40513111 -241680553 + AluY SINE Alu 1 311 0 919 152 0 192 chr1 40513111 40513332 -241680332 + AluJo SINE Alu 146 305 -7 666 222 0 8 chr1 40513765 40513891 -241679773 + FLAM_C SINE Alu 2 126 -17 1466 199 9 41 chr1 40513901 40514218 -241679446 + AluY SINE Alu 2 308 -3 2280 119 7 0 chr1 40514234 40514544 -241679120 - AluSx SINE Alu 0 312 1 2167 145 0 0 chr1 40514544 40514847 -241678817 - AluSq SINE Alu -10 303 1 2060 101 54 0 chr1 40514860 40515137 -241678527 - AluSp SINE Alu -20 293 2 412 174 0 0 chr1 40515445 40515514 -241678150 + AluJ/FLAM SINE Alu 9 77 -235 188 211 0 19 chr1 40515544 40515596 -241678068 + GA-rich Low_complexity Low_complexity 2 52 0 22 0 0 0 chr1 40515836 40515858 -241677806 + AT_rich Low_complexity Low_complexity 1 22 0 1907 174 3 6 chr1 40515858 40516169 -241677495 + AluJb SINE Alu 1 310 -2 1455 124 9 35 chr1 40516324 40516550 -241677114 - AluJb SINE Alu -5 307 88 2188 92 3 33 chr1 40516587 40516891 -241676773 - AluY SINE Alu -16 295 1 2185 90 0 4 chr1 40517028 40517306 -241676358 + AluSc SINE Alu 20 296 -13 366 279 46 156 chr1 40517626 40517800 -241675864 + L2 LINE L2 2849 3040 -232 318 26 0 0 chr1 40517800 40517839 -241675825 + (CA)n Simple_repeat Simple_repeat 1 39 0 366 279 46 156 chr1 40517839 40518030 -241675634 + L2 LINE L2 3040 3250 -22 2325 84 10 0 chr1 40518030 40518326 -241675338 + AluY SINE Alu 1 299 -12 366 279 46 156 chr1 40518326 40518337 -241675327 + L2 LINE L2 3250 3261 -11 1858 146 61 3 chr1 40518337 40518632 -241675032 + AluSx SINE Alu 1 312 0 366 279 46 156 chr1 40518632 40518729 -241674935 + L2 LINE L2 3261 3272 0 1147 144 154 0 chr1 40518864 40519072 -241674592 + AluJo SINE Alu 63 302 -10 660 197 7 35 chr1 40519081 40519223 -241674441 + AluJo SINE Alu 2 139 -173 23 0 0 0 chr1 40519308 40519331 -241674333 + AT_rich Low_complexity Low_complexity 1 23 0 2404 91 0 16 chr1 40519340 40519649 -241674015 + AluSx SINE Alu 1 304 -8 974 139 194 0 chr1 40519652 40519868 -241673796 + L1MA8 LINE L1 5997 6254 -37 2161 126 0 3 chr1 40519894 40520187 -241673477 + AluSx SINE Alu 1 292 -20 330 85 0 0 chr1 40520192 40520239 -241673425 - Alu SINE Alu -9 293 247 6015 42 0 1 chr1 40520339 40521013 -241672651 + SVA Other Other 713 1385 -1 213 39 0 0 chr1 40521037 40521063 -241672601 + (A)n Simple_repeat Simple_repeat 1 26 0 588 183 53 38 chr1 40521132 40521263 -241672401 - FLAM_C SINE Alu 0 133 1 275 294 56 0 chr1 40521303 40521429 -241672235 + L1M4 LINE L1 5008 5140 -1006 2467 70 3 0 chr1 40521464 40521766 -241671898 + AluY SINE Alu 5 307 -4 1666 162 56 3 chr1 40521771 40522055 -241671609 + AluJo SINE Alu 14 312 0 2303 102 0 0 chr1 40522332 40522627 -241671037 + AluSg SINE Alu 1 295 -15 633 245 215 71 chr1 40523051 40523374 -241670290 - L2 LINE L2 -1 3312 3037 2343 81 0 7 chr1 40523374 40523671 -241669993 + AluSp SINE Alu 1 295 -18 633 245 215 71 chr1 40523671 40523944 -241669720 - L2 LINE L2 -276 3037 2605 2491 52 0 0 chr1 40523946 40524282 -241669382 + AluY SINE Alu 1 336 0 817 231 6 6 chr1 40524290 40524459 -241669205 + AluJb SINE Alu 137 305 -7 2316 112 0 13 chr1 40524672 40524984 -241668680 - AluSx SINE Alu -4 308 1 783 148 7 22 chr1 40524989 40525124 -241668540 - FLAM_C SINE Alu 0 133 1 1556 212 103 80 chr1 40525584 40526206 -241667458 + Cheshire DNA MER1_type 4 639 -1781 346 158 0 24 chr1 40526189 40526271 -241667393 + Cheshire DNA MER1_type 1156 1235 -1185 * 272 106 85 0 chr1 40526291 40526338 -241667326 - Alu SINE Alu -10 292 242 4331 172 68 21 chr1 40526341 40526566 -241667098 + Cheshire DNA MER1_type 1385 1598 -822 1578 203 3 39 chr1 40526566 40526876 -241666788 + AluJo SINE Alu 1 299 -13 4331 172 68 21 chr1 40526876 40527490 -241666174 + Cheshire DNA MER1_type 1598 2182 -238 426 101 0 0 chr1 40527490 40527559 -241666105 + (TA)n Simple_repeat Simple_repeat 2 70 0 1678 151 22 7 chr1 40527564 40527842 -241665822 - AluSx SINE Alu -30 282 1 4331 172 68 21 chr1 40527842 40527984 -241665680 + Cheshire DNA MER1_type 2185 2419 -1 2136 132 7 0 chr1 40528044 40528354 -241665310 + AluSq SINE Alu 1 312 -1 707 270 88 22 chr1 40528513 40528739 -241664925 + MIR SINE MIR 19 259 -3 391 121 0 0 chr1 40529357 40529423 -241664241 - L1MB3 LINE L1 -24 6159 6094 1704 131 13 0 chr1 40529423 40529660 -241664004 + AluSx SINE Alu 1 240 -72 1311 128 0 0 chr1 40529760 40529939 -241663725 + AluSg/x SINE Alu 113 291 -19 596 109 20 10 chr1 40530002 40530103 -241663561 - MER2 DNA MER2_type -147 198 97 2201 123 7 0 chr1 40530111 40530413 -241663251 - AluSg SINE Alu -6 304 1 366 280 193 20 chr1 40530508 40530841 -241662823 - L1MB3 LINE L1 -546 5575 5406 2317 105 3 0 chr1 40531266 40531572 -241662092 + AluSx SINE Alu 1 307 -5 1783 162 69 0 chr1 40532144 40532434 -241661230 + AluJb SINE Alu 1 310 -2 1374 133 13 36 chr1 40532589 40532814 -241660850 - AluJb SINE Alu -5 307 88 2296 86 3 26 chr1 40532851 40533153 -241660511 - AluY SINE Alu -16 295 1 241 149 21 0 chr1 40533165 40533212 -241660452 - L1ME2 LINE L1 -18 6146 6099 418 297 39 71 chr1 40533796 40533914 -241659750 - MIR SINE MIR -79 183 72 2474 74 0 0 chr1 40533914 40534212 -241659452 - AluSc SINE Alu -11 298 1 418 297 39 71 chr1 40534212 40534275 -241659389 - MIR SINE MIR -190 72 8 3480 235 120 36 chr1 40534746 40535538 -241658126 + L2 LINE L2 1842 2751 -562 2402 80 0 0 chr1 40535538 40535837 -241657827 + AluY SINE Alu 1 299 -12 3480 235 120 36 chr1 40535837 40536195 -241657469 + L2 LINE L2 2751 3077 -236 2276 100 7 3 chr1 40536197 40536498 -241657166 + AluSx SINE Alu 1 302 -10 859 151 0 0 chr1 40536516 40536635 -241657029 + FLAM_C SINE Alu 6 124 -19 587 165 0 0 chr1 40536680 40536777 -241656887 + AluJ/FRAM SINE Alu 216 312 0 26 0 0 0 chr1 40536779 40536805 -241656859 + AT_rich Low_complexity Low_complexity 1 26 0 1838 182 3 0 chr1 40536805 40537112 -241656552 + AluJo SINE Alu 1 308 -4 563 206 222 17 chr1 40537153 40537333 -241656331 + L2 LINE L2 3097 3313 0 729 278 101 63 chr1 40537364 40538016 -241655648 + L2 LINE L2 2591 3267 -5 2016 143 13 0 chr1 40538104 40538412 -241655252 + AluJb SINE Alu 1 312 0 281 265 82 75 chr1 40539230 40539377 -241654287 + L2 LINE L2 3122 3269 -3 233 191 0 0 chr1 40539380 40539422 -241654242 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 469 325 126 5 chr1 40539579 40539770 -241653894 - MIR SINE MIR -48 214 1 429 20 0 0 chr1 40540317 40540367 -241653297 + (CA)n Simple_repeat Simple_repeat 1 50 0 814 233 61 0 chr1 40540620 40540800 -241652864 - MIR SINE MIR -34 228 38 1068 242 42 4 chr1 40541538 40541778 -241651886 + MIR SINE MIR 1 249 -13 291 347 137 19 chr1 40542396 40542658 -241651006 + L2 LINE L2 2972 3264 -8 2163 96 0 3 chr1 40542874 40543194 -241650470 + AluSg SINE Alu 1 319 0 761 292 60 9 chr1 40543196 40543429 -241650235 - MIR SINE MIR -3 259 15 424 313 37 12 chr1 40543568 40543731 -241649933 - MIR SINE MIR -66 196 30 181 81 27 27 chr1 40545172 40545209 -241648455 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 2017 99 7 32 chr1 40545691 40545975 -241647689 - AluSx SINE Alu -35 277 1 191 222 44 0 chr1 40546484 40546529 -241647135 + MIR SINE MIR 108 154 -108 26 50 0 0 chr1 40549100 40549140 -241644524 + AT_rich Low_complexity Low_complexity 1 40 0 204 40 0 0 chr1 40549562 40549587 -241644077 + (A)n Simple_repeat Simple_repeat 1 25 0 193 291 154 18 chr1 40550546 40550656 -241643008 - MIR SINE MIR -40 222 98 1610 133 4 70 chr1 40550770 40551041 -241642623 + AluSx SINE Alu 1 253 -59 181 281 115 21 chr1 40553354 40553450 -241640214 - L2 LINE L2 -35 3237 3133 2341 114 0 0 chr1 40554224 40554530 -241639134 + AluSx SINE Alu 1 306 -6 605 89 20 10 chr1 40554538 40554639 -241639025 + MER2 DNA MER2_type 97 198 -147 2159 124 0 20 chr1 40554688 40554994 -241638670 - AluSx SINE Alu -12 300 1 284 221 0 78 chr1 40554938 40555015 -241638649 - AluSq SINE Alu -112 191 121 1836 80 0 0 chr1 40555020 40555244 -241638420 + AluSg/x SINE Alu 81 304 -8 340 306 41 20 chr1 40555408 40555555 -241638109 + MARNA DNA Mariner 126 275 -311 2175 125 3 3 chr1 40556415 40556727 -241636937 + AluSx SINE Alu 1 312 0 771 92 0 0 chr1 40557048 40557157 -241636507 + (GGAA)n Simple_repeat Simple_repeat 4 112 0 2429 99 3 0 chr1 40557448 40557760 -241635904 - AluSp SINE Alu 0 313 1 243 0 0 0 chr1 40559022 40559049 -241634615 + (CA)n Simple_repeat Simple_repeat 2 28 0 2423 110 0 0 chr1 40559361 40559671 -241633993 + AluSx SINE Alu 1 310 -2 2486 78 3 0 chr1 40560120 40560428 -241633236 + AluY SINE Alu 1 309 -2 572 141 0 0 chr1 40561606 40561691 -241631973 + AluJo SINE Alu 1 85 -227 1917 138 7 0 chr1 40561928 40562204 -241631460 + AluSx SINE Alu 1 278 -34 2396 56 24 0 chr1 40562204 40562492 -241631172 + AluY SINE Alu 1 295 -16 1395 113 9 5 chr1 40564309 40564544 -241629120 + L1PB1 LINE L1 5928 6163 0 820 201 70 61 chr1 40570247 40570461 -241623203 + AluJo SINE Alu 90 305 -7 1036 167 8 114 chr1 40570463 40570601 -241623063 + AluJo SINE Alu 1 103 -209 2379 84 0 10 chr1 40570601 40570900 -241622764 - AluSp SINE Alu -17 296 1 1036 167 8 114 chr1 40570900 40571007 -241622657 + AluJo SINE Alu 103 220 -92 2307 78 11 7 chr1 40571443 40571726 -241621938 + AluSp SINE Alu 20 303 -10 624 221 0 8 chr1 40571798 40571920 -241621744 - FLAM_A SINE Alu -12 121 1 883 250 36 0 chr1 40572107 40572331 -241621333 + MER97c DNA MER1_type? 1 232 -858 2011 152 3 7 chr1 40572332 40572642 -241621022 - AluJb SINE Alu -3 309 1 1186 122 0 0 chr1 40572646 40572810 -241620854 - AluSg/x SINE Alu -17 293 130 477 130 76 53 chr1 40572810 40572870 -241620794 - MER97b DNA MER1_type? -330 723 666 2248 94 3 3 chr1 40572870 40573158 -241620506 - AluSq SINE Alu -1 312 25 477 130 76 53 chr1 40573158 40573228 -241620436 - MER97b DNA MER1_type? -387 666 590 1920 129 36 26 chr1 40573246 40573548 -241620116 - AluSx SINE Alu -7 305 1 1241 209 73 19 chr1 40573576 40573596 -241620068 - MER97c DNA MER1_type? -480 610 593 2032 167 3 0 chr1 40573596 40573901 -241619763 + AluJo SINE Alu 3 308 -4 1241 209 73 19 chr1 40573901 40574195 -241619469 - MER97c DNA MER1_type? -497 593 279 2321 114 0 3 chr1 40574197 40574505 -241619159 + AluSx SINE Alu 1 307 -5 2475 50 0 0 chr1 40574593 40574900 -241618764 + AluY SINE Alu 1 307 0 2064 104 0 31 chr1 40574911 40575236 -241618428 + AluSg1 SINE Alu 1 316 0 970 142 6 41 chr1 40575236 40575386 -241618278 + AluSg/x SINE Alu 133 278 -32 1806 71 0 0 chr1 40575386 40575598 -241618066 - AluSc SINE Alu -19 290 79 970 142 6 41 chr1 40575598 40575616 -241618048 + AluSg/x SINE Alu 278 295 -15 2166 124 0 20 chr1 40575624 40575930 -241617734 + AluSx SINE Alu 1 300 -12 974 146 19 63 chr1 40575979 40576088 -241617576 - MER2 DNA MER2_type -147 198 101 2560 82 0 0 chr1 40576088 40576394 -241617270 - AluSx SINE Alu -5 307 2 974 146 19 63 chr1 40576394 40576489 -241617175 - MER2 DNA MER2_type -244 101 3 2125 118 0 3 chr1 40576508 40576805 -241616859 - AluSx SINE Alu -16 296 1 978 212 36 61 chr1 40576809 40576856 -241616808 - MER97a DNA MER1_type? -623 271 224 2220 120 3 0 chr1 40576856 40577148 -241616516 + AluSx SINE Alu 3 295 -17 2011 152 3 7 chr1 40577152 40577462 -241616202 + AluJb SINE Alu 1 309 -3 978 212 36 61 chr1 40577462 40577687 -241615977 - MER97a DNA MER1_type? -673 221 1 624 221 0 8 chr1 40577874 40577996 -241615668 + FLAM_A SINE Alu 1 121 -12 2435 74 10 7 chr1 40578068 40578364 -241615300 - AluSp SINE Alu -10 303 7 1498 179 24 16 chr1 40578440 40578691 -241614973 + AluJb SINE Alu 1 253 -59 362 308 19 0 chr1 40578912 40579016 -241614648 - MIR SINE MIR -62 146 41 2061 126 0 17 chr1 40579725 40580019 -241613645 + AluJo SINE Alu 13 301 -11 1940 150 0 46 chr1 40580021 40580348 -241613316 + AluJb SINE Alu 1 312 0 456 320 169 12 chr1 40580395 40580714 -241612950 + L2 LINE L2 2597 2965 -349 1923 111 3 89 chr1 40580735 40580916 -241612748 - AluSg SINE Alu -22 288 144 2664 58 0 3 chr1 40580916 40581227 -241612437 - AluY SINE Alu -1 310 1 1923 111 3 89 chr1 40581227 40581360 -241612304 - AluSg SINE Alu -166 144 1 1932 149 3 7 chr1 40581396 40581684 -241611980 - AluJb SINE Alu -16 296 10 318 253 43 49 chr1 40581684 40581846 -241611818 + L2 LINE L2 3142 3302 -11 1838 184 0 22 chr1 40581853 40582030 -241611634 - AluJb SINE Alu -2 310 131 207 100 0 0 chr1 40582037 40582067 -241611597 + (TA)n Simple_repeat Simple_repeat 2 31 0 2261 75 14 10 chr1 40582067 40582352 -241611312 - AluY SINE Alu -22 289 1 2434 82 0 0 chr1 40582352 40582655 -241611009 - AluY SINE Alu -7 304 1 1838 184 0 22 chr1 40582655 40582792 -241610872 - AluJb SINE Alu -179 133 2 459 310 28 86 chr1 40582841 40583000 -241610664 + L2 LINE L2 2551 2688 -626 2106 98 0 44 chr1 40583000 40583133 -241610531 + AluSx SINE Alu 4 141 -168 2592 54 0 19 chr1 40583133 40583446 -241610218 + AluY SINE Alu 1 307 -4 2106 98 0 44 chr1 40583446 40583631 -241610033 + AluSx SINE Alu 141 309 0 459 310 28 86 chr1 40583631 40583760 -241609904 + L2 LINE L2 2688 2823 -491 2400 97 0 3 chr1 40584694 40584994 -241608670 - AluSg SINE Alu -11 299 1 2579 57 0 0 chr1 40585007 40585305 -241608359 - AluY SINE Alu -13 298 1 1907 154 0 4 chr1 40585307 40585587 -241608077 - AluJb SINE Alu -18 294 16 803 207 6 30 chr1 40585588 40585757 -241607907 - MLT1F LTR MaLR -377 165 1 2186 88 3 3 chr1 40585776 40586061 -241607603 + AluY SINE Alu 10 294 -17 643 244 65 79 chr1 40586063 40586342 -241607322 - MLT1L LTR MaLR -340 275 1 475 264 56 8 chr1 40586342 40586467 -241607197 + L2 LINE L2 3142 3272 0 216 329 0 0 chr1 40587819 40587892 -241605772 + G-rich Low_complexity Low_complexity 5 77 0 26 64 0 0 chr1 40588583 40588630 -241605034 + GC_rich Low_complexity Low_complexity 1 47 0 216 232 0 37 chr1 40588647 40588729 -241604935 + CT-rich Low_complexity Low_complexity 1 79 0 225 399 6 37 chr1 40589724 40589887 -241603777 + L2 LINE L2 3116 3273 -40 689 169 34 27 chr1 40589908 40590079 -241603585 - FRAM SINE Alu 0 172 1 345 260 13 0 chr1 40590081 40590158 -241603506 - L2 LINE L2 -9 3304 3227 188 61 61 0 chr1 40590163 40590196 -241603468 + A-rich Low_complexity Low_complexity 2 36 0 1935 135 7 23 chr1 40590200 40590504 -241603160 + AluJb SINE Alu 1 299 -13 198 191 0 0 chr1 40590708 40590755 -241602909 + CT-rich Low_complexity Low_complexity 3 49 0 621 250 104 45 chr1 40593186 40593406 -241600258 - MIR SINE MIR -2 260 28 443 211 240 39 chr1 40595293 40595497 -241598167 + MIR SINE MIR 10 254 -8 2523 82 0 3 chr1 40595497 40595801 -241597863 - AluSp SINE Alu -6 307 5 651 345 104 3 chr1 40596577 40596933 -241596731 - L2 LINE L2 -5 3267 2876 207 0 0 0 chr1 40597384 40597407 -241596257 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 719 168 0 23 chr1 40597465 40597596 -241596068 - FLAM_A SINE Alu -2 140 13 212 167 0 0 chr1 40597603 40597639 -241596025 + MIR SINE MIR 117 152 -110 2532 55 0 23 chr1 40597879 40598188 -241595476 - AluY SINE Alu -9 302 1 2386 101 0 0 chr1 40598188 40598485 -241595179 - AluSx SINE Alu -15 297 1 319 258 134 82 chr1 40598485 40598679 -241594985 - MIR SINE MIR -57 205 2 378 301 23 74 chr1 40599031 40599143 -241594521 - MIR SINE MIR -88 174 73 2490 74 0 0 chr1 40599143 40599440 -241594224 - AluSc SINE Alu -12 297 1 378 301 23 74 chr1 40599440 40599503 -241594161 - MIR SINE MIR -189 73 8 3228 235 120 36 chr1 40599974 40600766 -241592898 + L2 LINE L2 1842 2751 -562 2414 80 0 0 chr1 40600766 40601065 -241592599 + AluY SINE Alu 1 299 -12 3228 235 120 36 chr1 40601065 40601423 -241592241 + L2 LINE L2 2751 3077 -236 2281 100 7 3 chr1 40601425 40601725 -241591939 + AluSx SINE Alu 1 301 -11 860 151 0 0 chr1 40601743 40601862 -241591802 + FLAM_C SINE Alu 6 124 -19 555 165 0 0 chr1 40601907 40602004 -241591660 + AluJ/FRAM SINE Alu 216 312 0 26 0 0 0 chr1 40602006 40602032 -241591632 + AT_rich Low_complexity Low_complexity 1 26 0 1838 182 3 0 chr1 40602032 40602339 -241591325 + AluJo SINE Alu 1 308 -4 559 202 47 16 chr1 40602431 40602560 -241591104 + L2 LINE L2 3181 3313 0 642 283 100 72 chr1 40602591 40603243 -241590421 + L2 LINE L2 2591 3267 -5 2024 143 13 0 chr1 40603331 40603639 -241590025 + AluJb SINE Alu 1 312 0 260 291 73 36 chr1 40604494 40604604 -241589060 + L2 LINE L2 3156 3269 -3 233 191 0 0 chr1 40604607 40604649 -241589015 + (TGGG)n Simple_repeat Simple_repeat 1 42 0 471 309 126 5 chr1 40604806 40604997 -241588667 - MIR SINE MIR -48 214 1 411 21 0 0 chr1 40605542 40605590 -241588074 + (CA)n Simple_repeat Simple_repeat 1 48 0 759 233 61 0 chr1 40605843 40606023 -241587641 - MIR SINE MIR -34 228 38 1022 246 42 4 chr1 40606761 40607001 -241586663 + MIR SINE MIR 1 249 -13 280 378 130 11 chr1 40607620 40607882 -241585782 + L2 LINE L2 2972 3264 -8 2085 92 0 3 chr1 40608098 40608418 -241585246 + AluSg SINE Alu 1 319 0 690 313 52 0 chr1 40608420 40608653 -241585011 - MIR SINE MIR -3 259 15 412 323 30 25 chr1 40608783 40608984 -241584680 - MIR SINE MIR -57 205 4 181 81 27 27 chr1 40610396 40610433 -241583231 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr1 40611069 40611089 -241582575 + (CGG)n Simple_repeat Simple_repeat 3 22 0 198 0 0 0 chr1 40611123 40611145 -241582519 + (CCCGG)n Simple_repeat Simple_repeat 5 26 0 36 77 0 0 chr1 40611371 40611449 -241582215 + GC_rich Low_complexity Low_complexity 1 78 0 536 292 12 36 chr1 40612618 40612786 -241580878 + MIR SINE MIR 85 248 -14 189 0 0 0 chr1 40613089 40613110 -241580554 + (TGGA)n Simple_repeat Simple_repeat 3 23 0 1883 135 7 0 chr1 40613151 40613462 -241580202 + AluSx SINE Alu 1 313 0 983 186 57 38 chr1 40613696 40613906 -241579758 + MER20 DNA MER1_type 5 218 -1 1952 134 20 3 chr1 40614504 40614810 -241578854 + AluJb SINE Alu 1 311 -1 2156 88 6 31 chr1 40614843 40615163 -241578501 + AluSx SINE Alu 1 312 0 842 204 0 12 chr1 40615820 40616007 -241577657 - AluJ SINE Alu 0 304 120 258 170 19 0 chr1 40616021 40616074 -241577590 - MER41A LTR ERV1 -101 453 400 820 142 0 8 chr1 40616085 40616212 -241577452 - AluJ SINE Alu -185 127 2 206 250 200 12 chr1 40617236 40617316 -241576348 - MIR SINE MIR -148 114 20 226 180 60 0 chr1 40617477 40617527 -241576137 + L2 LINE L2 3256 3308 -5 388 293 169 27 chr1 40618374 40618599 -241575065 - MIR SINE MIR -3 259 3 2069 94 14 0 chr1 40618864 40619141 -241574523 - AluSx SINE Alu -31 281 1 976 97 8 0 chr1 40619141 40619275 -241574389 - AluSq/x SINE Alu -178 135 1 228 195 49 49 chr1 40619328 40619410 -241574254 + MIR SINE MIR 87 168 -94 355 248 37 28 chr1 40619659 40619768 -241573896 + L2 LINE L2 2958 3067 -246 1173 171 8 41 chr1 40619834 40620079 -241573585 - AluJb SINE Alu -52 260 24 1681 128 106 4 chr1 40620112 40620385 -241573279 - AluSx SINE Alu -11 301 1 493 145 12 0 chr1 40620401 40620484 -241573180 - MER51A LTR ERV1 -81 553 470 378 311 59 22 chr1 40620545 40620680 -241572984 - L2 LINE L2 -5 3267 3128 563 245 4 137 chr1 40620747 40620870 -241572794 + MIR SINE MIR 43 181 -81 2194 73 42 0 chr1 40620870 40621159 -241572505 + AluY SINE Alu 1 301 -10 1557 101 9 0 chr1 40621159 40621376 -241572288 + AluSc SINE Alu 83 301 -8 2432 46 0 16 chr1 40621376 40621680 -241571984 + AluY SINE Alu 1 299 -12 563 245 4 137 chr1 40621680 40621795 -241571869 + MIR SINE MIR 178 251 -11 2253 81 0 26 chr1 40622125 40622435 -241571229 + AluY SINE Alu 1 302 -9 294 343 6 67 chr1 40622623 40622801 -241570863 - MIR SINE MIR -50 212 46 1611 178 0 31 chr1 40622804 40623091 -241570573 - AluJb SINE Alu -34 278 1 2078 88 0 0 chr1 40623144 40623417 -241570247 - AluSq SINE Alu -9 304 32 357 326 44 28 chr1 40623486 40623667 -241569997 - MIR SINE MIR 0 262 79 213 131 0 167 chr1 40623702 40623786 -241569878 + MIR SINE MIR 114 183 -79 670 272 139 55 chr1 40623966 40624312 -241569352 + L2 LINE L2 2818 3192 -121 1641 192 3 10 chr1 40624394 40624706 -241568958 - AluJb SINE Alu -2 310 1 351 192 24 109 chr1 40625433 40625467 -241568197 + MIR SINE MIR 67 102 -160 2416 71 0 3 chr1 40625467 40625776 -241567888 - AluSc SINE Alu -1 308 1 351 192 24 109 chr1 40625776 40625900 -241567764 + MIR SINE MIR 102 210 -52 2136 94 7 7 chr1 40626282 40626579 -241567085 - AluY SINE Alu -14 297 1 463 233 74 107 chr1 40627966 40627998 -241565666 + MIR SINE MIR 2 34 -228 2220 104 0 0 chr1 40627998 40628297 -241565367 + AluSg1 SINE Alu 1 299 -10 463 233 74 107 chr1 40628297 40628387 -241565277 + MIR SINE MIR 34 125 -137 2363 88 0 16 chr1 40628387 40628704 -241564960 - AluSp SINE Alu 0 313 2 463 233 74 107 chr1 40628704 40628850 -241564814 + MIR SINE MIR 125 262 0 276 272 341 0 chr1 40631203 40631376 -241562288 - MIR SINE MIR -13 249 18 314 280 248 51 chr1 40633773 40633987 -241559677 - MIR SINE MIR -3 259 4 2132 85 0 47 chr1 40634063 40634240 -241559424 - AluSx SINE Alu -8 304 147 2023 122 0 22 chr1 40634240 40634551 -241559113 - AluSg SINE Alu -6 304 1 2132 85 0 47 chr1 40634551 40634692 -241558972 - AluSx SINE Alu -165 147 1 1949 115 14 4 chr1 40634695 40634995 -241558669 - AluSg1 SINE Alu 0 303 1 180 262 272 0 chr1 40634998 40635101 -241558563 - L2 LINE L2 0 3272 3142 582 278 89 6 chr1 40635132 40635345 -241558319 + MIR SINE MIR 31 262 0 378 250 37 28 chr1 40635417 40635525 -241558139 + L2 LINE L2 3152 3260 -12 2064 119 0 0 chr1 40635525 40635834 -241557830 + AluSp SINE Alu 1 309 0 1472 151 171 0 chr1 40635844 40636102 -241557562 - AluJb SINE Alu 0 302 1 537 231 168 0 chr1 40636184 40636327 -241557337 - MER45A DNA AcHobo -11 167 1 2085 127 0 0 chr1 40637158 40637458 -241556206 - AluSx SINE Alu -12 300 1 234 163 12 47 chr1 40637460 40637546 -241556118 + (TTA)n Simple_repeat Simple_repeat 3 85 0 881 191 0 0 chr1 40637548 40637700 -241555964 - FRAM SINE Alu -24 152 1 198 0 0 0 chr1 40637700 40637722 -241555942 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2180 65 14 0 chr1 40637722 40638001 -241555663 - AluSp SINE Alu -30 283 1 2261 82 3 0 chr1 40638011 40638304 -241555360 - AluSc SINE Alu -1 308 15 1018 233 9 18 chr1 40638356 40638575 -241555089 + MIR SINE MIR 36 252 -10 383 314 58 7 chr1 40638595 40638732 -241554932 - MIR SINE MIR -111 151 8 352 247 28 48 chr1 40638825 40638970 -241554694 - MIR3 SINE MIR -22 186 45 657 222 142 0 chr1 40639595 40639771 -241553893 - MIR SINE MIR -50 212 12 183 152 0 0 chr1 40640262 40640308 -241553356 + (CA)n Simple_repeat Simple_repeat 2 47 0 24 32 0 0 chr1 40641008 40641039 -241552625 + GC_rich Low_complexity Low_complexity 1 31 0 1128 63 0 32 chr1 40644675 40644695 -241548969 - AluSx SINE Alu -159 153 134 1951 68 46 21 chr1 40644695 40645026 -241548638 - AluY SINE Alu 0 311 1 1128 63 0 32 chr1 40645026 40645163 -241548501 - AluSx SINE Alu -178 134 1 1344 268 83 27 chr1 40645167 40645694 -241547970 + L2 LINE L2 2142 2698 -616 241 327 103 6 chr1 40645688 40645788 -241547876 - L2 LINE L2 -108 3205 3116 * 2233 99 0 3 chr1 40645788 40646092 -241547572 + AluSq SINE Alu 1 303 -10 241 327 103 6 chr1 40646092 40646156 -241547508 - L2 LINE L2 -197 3116 3025 783 294 47 17 chr1 40646292 40646527 -241547137 + MIR SINE MIR 11 252 -10 279 132 0 0 chr1 40646677 40646715 -241546949 + Alu SINE Alu 1 38 -265 233 97 0 0 chr1 40646717 40646748 -241546916 + Alu SINE Alu 10 40 -260 966 122 7 0 chr1 40646749 40646896 -241546768 + AluSp/q SINE Alu 162 309 -4 464 316 70 39 chr1 40647058 40647116 -241546548 + L1MEd LINE L1 563 618 -5501 2217 95 0 0 chr1 40647116 40647434 -241546230 + AluSx SINE Alu 1 312 0 464 316 70 39 chr1 40647434 40647732 -241545932 + L1MEd LINE L1 618 930 -5189 2289 83 0 10 chr1 40648002 40648304 -241545360 + AluSq SINE Alu 1 299 -14 696 244 0 31 chr1 40648362 40648522 -241545142 + FRAM SINE Alu 2 156 -20 2145 122 0 7 chr1 40648827 40649130 -241544534 - AluSx SINE Alu -11 301 1 2131 87 0 10 chr1 40649844 40650177 -241543487 + AluSq SINE Alu 1 330 0 812 184 11 39 chr1 40650674 40650853 -241542811 - AluJo/FRAM SINE Alu -2 310 137 2100 133 3 0 chr1 40650853 40651154 -241542510 - AluSx SINE Alu -8 304 3 1287 75 0 48 chr1 40651181 40651367 -241542297 + L1PA8 LINE L1 5989 6165 -7 198 0 0 0 chr1 40651546 40651568 -241542096 + (A)n Simple_repeat Simple_repeat 1 22 0 659 119 8 8 chr1 40651765 40651883 -241541781 + L1MC3 LINE L1 7597 7714 -71 984 186 192 48 chr1 40651883 40652217 -241541447 + MLT1B LTR MaLR 1 382 -8 216 254 297 54 chr1 40652559 40652744 -241540920 + MIR SINE MIR 23 252 -10 864 78 0 0 chr1 40652856 40652971 -241540693 + AluY SINE Alu 188 302 -9 1858 140 35 0 chr1 40653630 40653916 -241539748 + AluJb SINE Alu 3 298 -14 2125 78 3 56 chr1 40653918 40654266 -241539398 + AluY SINE Alu 1 331 0 1014 213 85 0 chr1 40654736 40655008 -241538656 + MER33 DNA MER1_type 30 324 0 2429 62 0 3 chr1 40655469 40655777 -241537887 - AluY SINE Alu -4 307 1 1268 151 5 5 chr1 40655777 40655912 -241537752 - AluSx SINE Alu -177 135 1 649 282 102 26 chr1 40655913 40656188 -241537476 + HAL1 LINE L1 1914 2167 -340 2567 54 3 0 chr1 40656188 40656486 -241537178 - AluY SINE Alu -12 299 1 649 282 102 26 chr1 40656486 40656710 -241536954 + HAL1 LINE L1 2167 2451 -56 2211 125 3 0 chr1 40656764 40657067 -241536597 - AluSx SINE Alu -8 304 1 1535 147 9 4 chr1 40657236 40657468 -241536196 - AluJo SINE Alu -2 310 78 2243 101 0 14 chr1 40658252 40658548 -241535116 + AluY SINE Alu 4 295 -16 2333 92 0 0 chr1 40658889 40659184 -241534480 + AluSg SINE Alu 1 295 -15 633 245 215 71 chr1 40659608 40659931 -241533733 - L2 LINE L2 -1 3312 3037 2343 81 0 7 chr1 40659931 40660228 -241533436 + AluSp SINE Alu 1 295 -18 633 245 215 71 chr1 40660228 40660501 -241533163 - L2 LINE L2 -276 3037 2605 2459 79 0 0 chr1 40660503 40660806 -241532858 + AluY SINE Alu 1 303 -8 2165 81 21 0 chr1 40660806 40661090 -241532574 + AluY SINE Alu 1 290 -21 1214 155 0 5 chr1 40661117 40661304 -241532360 + AluJb SINE Alu 125 310 -2 386 253 50 10 chr1 40661311 40661410 -241532254 - L2 LINE L2 -11 3302 3200 1179 186 35 4 chr1 40661802 40662033 -241531631 + AluSx SINE Alu 60 297 -15 541 164 52 9 chr1 40662035 40662151 -241531513 - L1ME1 LINE L1 -53 6113 5993 275 279 196 39 chr1 40662281 40662510 -241531154 - L2 LINE L2 -16 3297 3033 2097 133 7 7 chr1 40662686 40662980 -241530684 - AluSx SINE Alu -18 294 1 610 270 156 0 chr1 40663931 40664142 -241529522 - Charlie8 DNA MER1_type -2141 276 33 2190 98 0 41 chr1 40664350 40664495 -241529169 + AluSx SINE Alu 1 150 -162 2422 71 14 0 chr1 40664495 40664791 -241528873 + AluSp SINE Alu 1 300 -13 2190 98 0 41 chr1 40664791 40664961 -241528703 + AluSx SINE Alu 150 303 -9 2260 99 3 0 chr1 40664961 40665279 -241528385 + AluSp SINE Alu 1 319 0 258 56 0 0 chr1 40665476 40665512 -241528152 + (A)n Simple_repeat Simple_repeat 1 36 0 2171 111 3 3 chr1 40665517 40665814 -241527850 + AluY SINE Alu 1 297 -14 989 175 0 12 chr1 40665901 40666072 -241527592 - AluJo SINE Alu -17 295 127 2121 120 7 16 chr1 40666259 40666395 -241527269 + AluSx SINE Alu 1 137 -175 1995 148 10 13 chr1 40666395 40666699 -241526965 + AluSq SINE Alu 1 303 -10 2121 120 7 16 chr1 40666699 40666871 -241526793 + AluSx SINE Alu 137 306 -6 1183 102 0 0 chr1 40666874 40667031 -241526633 + AluSg/x SINE Alu 135 291 -19 410 218 0 0 chr1 40667055 40667133 -241526531 - AluJ/FRAM SINE Alu -18 294 217 2295 88 7 3 chr1 40667331 40667626 -241526038 + AluSp SINE Alu 1 296 -17 403 318 186 40 chr1 40667726 40668150 -241525514 + L2 LINE L2 2824 3309 -4 2332 99 3 0 chr1 40668355 40668658 -241525006 + AluSx SINE Alu 1 304 -8 529 304 58 12 chr1 40669382 40669553 -241524111 - MIR SINE MIR -48 214 36 317 312 47 24 chr1 40670849 40671019 -241522645 + MIR SINE MIR 35 208 -54 290 276 112 45 chr1 40671162 40671296 -241522368 + MER5A DNA MER1_type 47 189 0 234 0 0 0 chr1 40671765 40671791 -241521873 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1814 133 8 0 chr1 40671793 40672056 -241521608 - AluSx SINE Alu -36 276 12 230 367 0 13 chr1 40672083 40672162 -241521502 - L2 LINE L2 -14 3258 3181 2354 90 0 7 chr1 40672206 40672516 -241521148 + AluSx SINE Alu 1 308 -4 749 148 133 41 chr1 40672518 40672714 -241520950 - Tigger1 DNA MER2_type 0 2418 2205 608 106 24 0 chr1 40672717 40672802 -241520862 + AluSp SINE Alu 1 87 -226 2370 89 0 7 chr1 40672803 40673105 -241520559 + AluSq SINE Alu 1 300 -13 1648 88 9 9 chr1 40673105 40673320 -241520344 + AluSp SINE Alu 76 291 -22 1650 118 16 141 chr1 40673325 40673708 -241519956 - Tigger1 DNA MER2_type -219 2199 1865 1407 168 7 69 chr1 40673708 40673915 -241519749 - AluJb SINE Alu -10 302 84 243 0 0 0 chr1 40673915 40673942 -241519722 + (TA)n Simple_repeat Simple_repeat 1 27 0 2119 123 7 7 chr1 40673942 40674243 -241519421 - AluSx SINE Alu -11 301 1 1407 168 7 69 chr1 40674243 40674325 -241519339 - AluJb SINE Alu -226 86 30 702 146 0 0 chr1 40674424 40674520 -241519144 - AluS SINE Alu -215 97 2 627 120 30 0 chr1 40674521 40674621 -241519043 - Tigger1 DNA MER2_type -938 1480 1378 1997 146 7 3 chr1 40674622 40674916 -241518748 + AluSx SINE Alu 1 295 -17 6897 127 26 41 chr1 40674916 40675186 -241518478 - Tigger1 DNA MER2_type -1186 1232 960 2074 128 3 16 chr1 40675186 40675498 -241518166 + AluSx SINE Alu 1 308 -4 6897 127 26 41 chr1 40675498 40675859 -241517805 - Tigger1 DNA MER2_type -1458 960 595 2241 121 0 0 chr1 40675859 40676157 -241517507 - AluSg SINE Alu -12 298 1 6897 127 26 41 chr1 40676157 40676168 -241517496 - Tigger1 DNA MER2_type -1823 595 585 2381 75 0 23 chr1 40676168 40676476 -241517188 - AluY SINE Alu -10 301 1 2019 82 0 141 chr1 40676476 40676829 -241516835 - AluSx SINE Alu -8 304 1 6897 127 26 41 chr1 40676829 40677408 -241516256 - Tigger1 DNA MER2_type -1831 587 26 184 378 27 45 chr1 40677698 40677809 -241515855 + L2 LINE L2 3077 3185 -87 400 290 65 32 chr1 40677811 40677997 -241515667 - L2 LINE L2 -5 3308 3117 330 200 0 0 chr1 40678027 40678087 -241515577 + MER58 DNA MER1_type 1 60 -155 1520 162 72 14 chr1 40678103 40678393 -241515271 - AluSg SINE Alu -2 308 2 2002 92 85 0 chr1 40678394 40678676 -241514988 - AluSx SINE Alu -6 306 1 915 164 0 0 chr1 40678677 40678817 -241514847 - FLAM_C SINE Alu -3 140 1 608 176 146 46 chr1 40678866 40679127 -241514537 + AluSp SINE Alu 2 288 -25 1467 143 9 0 chr1 40679293 40679510 -241514154 + AluSg/x SINE Alu 84 302 -10 1689 102 102 33 chr1 40679510 40679734 -241513930 + MER46B DNA MER2_type 34 161 -2570 1795 104 123 11 chr1 40679734 40680002 -241513662 - AluSg SINE Alu -11 299 2 1689 102 102 33 chr1 40680002 40680082 -241513582 + MER46B DNA MER2_type 161 234 -2 341 47 0 0 chr1 40680400 40680443 -241513221 - L1PA16 LINE L1 -9 6157 6115 318 320 51 13 chr1 40682254 40682410 -241511254 + MIR SINE MIR 47 208 -54 270 293 113 38 chr1 40682554 40682687 -241510977 + MER5A DNA MER1_type 47 189 0 185 369 39 39 chr1 40682793 40682923 -241510741 + L2 LINE L2 3082 3211 -61 234 0 0 0 chr1 40683155 40683181 -241510483 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1683 126 15 15 chr1 40683183 40683445 -241510219 - AluSx SINE Alu -36 276 15 271 359 0 0 chr1 40683473 40683551 -241510113 - L2 LINE L2 -14 3258 3181 2271 89 7 7 chr1 40683595 40683898 -241509766 + AluSx SINE Alu 1 303 -9 2154 100 14 4 chr1 40683898 40684214 -241509450 + AluSp SINE Alu 1 319 0 258 56 0 0 chr1 40684411 40684447 -241509217 + (A)n Simple_repeat Simple_repeat 1 36 0 2206 112 3 0 chr1 40684452 40684748 -241508916 + AluY SINE Alu 1 297 -14 989 175 0 12 chr1 40684835 40685006 -241508658 - AluJo SINE Alu -17 295 127 1059 103 0 0 chr1 40685193 40685329 -241508335 + AluSq/x SINE Alu 1 136 -176 1786 145 10 24 chr1 40685329 40685619 -241508045 + AluSq SINE Alu 1 286 -27 491 236 22 28 chr1 40685745 40685923 -241507741 + AluY SINE Alu 130 306 -5 1288 130 11 0 chr1 40685923 40686107 -241507557 + AluSg/x SINE Alu 103 288 -22 515 317 169 12 chr1 40686128 40686447 -241507217 - L2 LINE L2 -349 2965 2597 1931 150 0 46 chr1 40686494 40686821 -241506843 - AluJb SINE Alu 0 312 1 2058 126 0 17 chr1 40686823 40687117 -241506547 - AluJo SINE Alu -11 301 13 384 308 19 0 chr1 40687825 40687929 -241505735 + MIR SINE MIR 41 146 -62 1491 179 24 16 chr1 40688150 40688401 -241505263 - AluJb SINE Alu -59 253 1 2331 80 10 7 chr1 40688481 40688770 -241504894 + AluSp SINE Alu 14 303 -10 675 221 0 8 chr1 40688842 40688964 -241504700 - FLAM_A SINE Alu -12 121 1 875 209 28 84 chr1 40689153 40689387 -241504277 + MER97b DNA MER1_type? 1 246 -807 1883 153 10 7 chr1 40689387 40689687 -241503977 - AluJb SINE Alu -11 301 1 2213 120 3 0 chr1 40689691 40689983 -241503681 - AluSx SINE Alu -17 295 3 875 209 28 84 chr1 40689983 40690030 -241503634 + MER97b DNA MER1_type? 249 271 -782 2225 104 0 3 chr1 40690034 40690332 -241503332 + AluSx SINE Alu 1 297 -15 2533 74 0 0 chr1 40690334 40690631 -241503033 + AluY SINE Alu 3 299 -12 469 141 0 0 chr1 40690632 40690703 -241502961 - AluSp/q SINE Alu -8 305 235 1031 196 32 54 chr1 40690703 40690766 -241502898 + L1M4 LINE L1 4891 4954 -1192 1797 171 14 0 chr1 40690766 40691052 -241502612 + AluJo SINE Alu 1 290 -22 1031 196 32 54 chr1 40691052 40691270 -241502394 + L1M4 LINE L1 4954 5167 -979 2402 84 3 0 chr1 40691270 40691568 -241502096 + AluY SINE Alu 1 299 -12 1031 196 32 54 chr1 40691568 40691601 -241502063 + L1M4 LINE L1 5167 5199 -947 2478 68 7 10 chr1 40691601 40691908 -241501756 + AluY SINE Alu 1 306 -5 616 138 9 9 chr1 40691909 40692011 -241501653 + L1M4 LINE L1 5391 5495 -689 1698 181 24 11 chr1 40692011 40692298 -241501366 + AluJo SINE Alu 1 291 -21 310 312 102 19 chr1 40692304 40692519 -241501145 + L1 LINE L1 3350 3582 -2564 927 84 0 17 chr1 40692519 40692668 -241500996 - AluSg/x SINE Alu 0 311 165 904 106 25 75 chr1 40742668 40742680 -241450984 + FRAM SINE Alu 23 34 -278 4889 188 108 112 chr1 40742680 40744442 -241449222 - MER52A LTR ERV1 0 1755 1 904 106 25 75 chr1 40744442 40744590 -241449074 + FRAM SINE Alu 34 175 -1 749 168 23 0 chr1 40744847 40744978 -241448686 - U4 snRNA snRNA -1 144 11 180 0 0 0 chr1 40745030 40745050 -241448614 + (CA)n Simple_repeat Simple_repeat 2 21 0 2225 126 7 0 chr1 40745050 40745343 -241448321 - AluSx SINE Alu -17 295 1 402 57 0 0 chr1 40745352 40745405 -241448259 + (TA)n Simple_repeat Simple_repeat 2 54 0 349 295 23 0 chr1 40745416 40745589 -241448075 + (TA)n Simple_repeat Simple_repeat 2 178 0 25 0 0 0 chr1 40745596 40745621 -241448043 + AT_rich Low_complexity Low_complexity 1 25 0 244 310 21 0 chr1 40745672 40745814 -241447850 + (TA)n Simple_repeat Simple_repeat 1 145 0 255 291 26 7 chr1 40745837 40745880 -241447784 + (TA)n Simple_repeat Simple_repeat 1 42 -112 2303 54 0 20 chr1 40745880 40746216 -241447448 - AluY SINE Alu 0 311 1 255 291 26 7 chr1 40746216 40746323 -241447341 + (TA)n Simple_repeat Simple_repeat 42 154 0 350 174 161 76 chr1 40746323 40746547 -241447117 + Charlie1 DNA MER1_type 2519 2761 0 2495 71 3 3 chr1 40746567 40746875 -241446789 - AluY SINE Alu -3 308 1 2245 123 0 10 chr1 40747508 40747818 -241445846 - AluJb SINE Alu -5 307 1 984 209 0 0 chr1 40747917 40748094 -241445570 - AluJo/FRAM SINE Alu -2 310 134 2056 112 3 27 chr1 40748094 40748388 -241445276 - AluSp SINE Alu -26 287 1 1087 67 4 20 chr1 40748608 40748871 -241444793 + (TTCC)n Simple_repeat Simple_repeat 1 258 0 2074 112 0 0 chr1 40748885 40749153 -241444511 - AluSg1 SINE Alu -15 294 27 278 283 207 28 chr1 40749153 40749298 -241444366 + MER5A DNA MER1_type 1 171 -18 1106 129 11 51 chr1 40749479 40749657 -241444007 - AluJb SINE Alu -9 303 133 1672 155 48 24 chr1 40749940 40750230 -241443434 + AluJb SINE Alu 1 297 -15 2206 103 21 0 chr1 40750232 40750523 -241443141 + AluSg SINE Alu 2 298 -12 234 167 0 0 chr1 40750600 40750642 -241443022 + LTR67 LTR ERVL 18 59 -498 415 258 25 8 chr1 40750930 40751050 -241442614 + LTR67 LTR ERVL 436 557 0 2252 128 0 0 chr1 40751099 40751411 -241442253 - AluSx SINE Alu 0 312 1 2291 106 3 0 chr1 40751426 40751718 -241441946 - AluSg SINE Alu -17 293 1 343 337 44 33 chr1 40751769 40751950 -241441714 - L3 LINE CR1 -3 1574 1392 24 0 0 0 chr1 40752265 40752289 -241441375 + AT_rich Low_complexity Low_complexity 1 24 0 2395 122 0 0 chr1 40752296 40752608 -241441056 - AluSx SINE Alu 0 312 1 2613 59 0 0 chr1 40753097 40753402 -241440262 + AluY SINE Alu 1 305 -6 999 186 22 6 chr1 40753483 40753666 -241439998 + AluJo SINE Alu 121 306 -6 1724 148 62 22 chr1 40753935 40754389 -241439275 - MER51A LTR ERV1 -16 618 122 2333 101 0 19 chr1 40754797 40755105 -241438559 - AluSx SINE Alu -10 302 1 2242 112 0 7 chr1 40755804 40756099 -241437565 + AluSx SINE Alu 1 293 -19 1682 130 134 0 chr1 40756108 40756370 -241437294 + AluJo SINE Alu 1 297 -15 1481 155 29 7 chr1 40756417 40756798 -241436866 + LOR1a LTR ERV1 40 497 0 195 356 48 0 chr1 40757172 40757276 -241436388 - MIR SINE MIR -63 145 37 610 163 0 0 chr1 40757414 40757506 -241436158 - AluJb SINE Alu -12 300 209 2536 63 3 0 chr1 40757580 40757882 -241435782 - AluY SINE Alu -8 303 1 2425 93 3 3 chr1 40758393 40758703 -241434961 - AluSp SINE Alu -3 310 1 2280 105 0 7 chr1 40759216 40759511 -241434153 - AluY SINE Alu -18 293 1 2087 127 3 36 chr1 40760886 40761194 -241432470 + AluSx SINE Alu 1 298 -14 414 344 156 19 chr1 40761398 40761758 -241431906 + L2 LINE L2 2829 3237 -35 960 199 6 0 chr1 40762053 40762224 -241431440 - FRAM SINE Alu 0 176 5 2220 107 0 7 chr1 40762229 40762527 -241431137 - AluSg SINE Alu -14 296 1 197 280 0 0 chr1 40763883 40763933 -241429731 + L2 LINE L2 3223 3272 0 218 32 32 0 chr1 40765275 40765306 -241428358 + (TAA)n Simple_repeat Simple_repeat 1 32 0 377 250 226 18 chr1 40765306 40765470 -241428194 - MIR SINE MIR -14 248 51 2416 104 0 0 chr1 40765844 40766152 -241427512 + AluY SINE Alu 1 308 -3 1755 163 21 3 chr1 40766368 40766656 -241427008 - AluJb SINE Alu -19 293 1 472 243 105 7 chr1 40766664 40766816 -241426848 - MIR SINE MIR -68 194 28 426 261 72 14 chr1 40766882 40767020 -241426644 - MIR SINE MIR -114 148 3 300 256 129 12 chr1 40767182 40767275 -241426389 + MIR3 SINE MIR 98 203 -5 2276 125 0 0 chr1 40767306 40767617 -241426047 + AluSx SINE Alu 1 311 -1 529 263 75 66 chr1 40767685 40767868 -241425796 + MIR SINE MIR 33 220 -42 2244 116 3 3 chr1 40767868 40768170 -241425494 + AluSg SINE Alu 1 302 -8 529 263 75 66 chr1 40768170 40768214 -241425450 + MIR SINE MIR 220 262 0 182 294 59 0 chr1 40768481 40768532 -241425132 + L3 LINE CR1 1517 1570 -7 204 343 32 50 chr1 40768781 40769058 -241424606 + L2 LINE L2 2134 2405 -909 194 347 21 0 chr1 40769058 40769153 -241424511 + L2 LINE L2 2561 2657 -657 2271 119 0 0 chr1 40769160 40769462 -241424202 - AluSx SINE Alu -10 302 1 2402 79 0 3 chr1 40769464 40769756 -241423908 - AluSg SINE Alu -19 291 1 1778 148 0 73 chr1 40769756 40770073 -241423591 - AluSc SINE Alu -15 294 1 26 98 0 0 chr1 40770197 40770279 -241423385 + AT_rich Low_complexity Low_complexity 1 82 0 2433 96 0 6 chr1 40770362 40770676 -241422988 + AluSx SINE Alu 1 312 0 373 233 171 8 chr1 40770961 40771090 -241422574 - MIR SINE MIR -57 205 56 2242 99 28 0 chr1 40771119 40771403 -241422261 + AluSx SINE Alu 1 292 -20 774 184 0 22 chr1 40771403 40771530 -241422134 - FLAM_A SINE Alu -176 126 1 2096 148 3 3 chr1 40771560 40771863 -241421801 + AluJo SINE Alu 1 303 -9 999 137 163 0 chr1 40771992 40772182 -241421482 - AluJb SINE Alu -5 307 87 304 153 119 0 chr1 40772210 40772269 -241421395 - AluSq SINE Alu -1 301 236 2314 70 42 0 chr1 40772269 40772553 -241421111 - AluSg SINE Alu -14 296 1 1514 177 8 0 chr1 40772554 40772797 -241420867 - AluSq SINE Alu -68 245 1 217 319 125 46 chr1 40772845 40772948 -241420716 - L2 LINE L2 -657 2657 2564 783 186 0 0 chr1 40772948 40773077 -241420587 + FLAM_C SINE Alu 5 133 0 217 319 125 46 chr1 40773077 40773106 -241420558 - L2 LINE L2 -750 2564 2539 2345 98 0 0 chr1 40773106 40773411 -241420253 - AluSx SINE Alu -7 305 1 217 319 125 46 chr1 40773411 40774022 -241419642 - L2 LINE L2 -775 2539 1854 633 209 0 0 chr1 40775166 40775295 -241418369 + MER94 DNA DNA 3 131 -3 491 276 30 34 chr1 40775333 40775544 -241418120 + MIR3 SINE MIR 2 209 -53 1254 164 0 18 chr1 40775694 40775913 -241417751 - AluJb SINE Alu 0 312 98 807 168 0 0 chr1 40775940 40776059 -241417605 - AluJ SINE Alu -183 119 1 540 234 122 47 chr1 40776108 40776245 -241417419 - MIR SINE MIR -4 258 98 2439 70 7 3 chr1 40776245 40776544 -241417120 - AluSq SINE Alu -13 300 1 540 234 122 47 chr1 40776544 40776620 -241417044 - MIR SINE MIR -164 98 29 2556 52 0 23 chr1 40776717 40777022 -241416642 - AluY SINE Alu -13 298 1 997 186 233 13 chr1 40777029 40777265 -241416399 - AluJo SINE Alu -12 290 3 2872 166 50 3 chr1 40777297 40777876 -241415788 - L1MC3 LINE L1 -144 7641 7036 249 33 0 0 chr1 40777881 40777911 -241415753 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2169 134 7 0 chr1 40778120 40778425 -241415239 - AluSx SINE Alu -1 311 5 1904 154 3 49 chr1 40778507 40778648 -241415016 + AluJo SINE Alu 3 149 -163 2549 72 3 0 chr1 40778648 40778954 -241414710 + AluSp SINE Alu 1 307 -6 1904 154 3 49 chr1 40778954 40779137 -241414527 + AluJo SINE Alu 149 312 0 202 309 15 15 chr1 40779179 40779247 -241414417 + MIR3 SINE MIR 140 207 -1 1845 140 65 7 chr1 40779851 40780144 -241413520 + AluJo SINE Alu 1 310 -2 24 32 0 0 chr1 40780174 40780205 -241413459 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 40782056 40782077 -241411587 + AT_rich Low_complexity Low_complexity 1 21 0 2424 43 7 16 chr1 40782082 40782385 -241411279 + AluY SINE Alu 4 303 -8 2484 64 7 0 chr1 40782558 40782853 -241410811 + AluSp SINE Alu 1 297 -16 489 245 54 126 chr1 40783307 40783568 -241410096 - MIR SINE MIR -3 259 18 2264 105 0 0 chr1 40783569 40783876 -241409788 - AluSx SINE Alu 0 307 1 195 42 0 0 chr1 40785069 40785093 -241408571 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 566 236 133 7 chr1 40785336 40785511 -241408153 + MIR SINE MIR 21 214 -48 2065 132 40 0 chr1 40785680 40785976 -241407688 + AluSx SINE Alu 1 308 -4 2234 92 7 0 chr1 40786315 40786625 -241407039 - AluSx SINE Alu 0 312 1 2315 102 0 0 chr1 40786630 40786935 -241406729 - AluSx SINE Alu -7 305 1 254 268 0 0 chr1 40787371 40787427 -241406237 + MIR SINE MIR 91 146 -62 644 253 170 16 chr1 40788161 40788355 -241405309 + MIR SINE MIR 22 245 -17 196 222 37 56 chr1 40788463 40788517 -241405147 + L2 LINE L2 3261 3313 0 494 309 77 10 chr1 40788665 40788872 -241404792 - MIR SINE MIR -41 221 1 201 314 12 47 chr1 40789034 40789120 -241404544 - L2 LINE L2 -9 3304 3222 337 301 49 35 chr1 40789398 40789601 -241404063 - L2 LINE L2 -452 2862 2657 2416 97 3 0 chr1 40790167 40790478 -241403186 + AluSx SINE Alu 1 312 0 380 257 169 6 chr1 40791369 40791544 -241402120 + MIR SINE MIR 3 207 -55 2592 62 3 0 chr1 40791783 40792092 -241401572 - AluSq SINE Alu -3 310 1 2325 67 3 20 chr1 40792460 40792760 -241400904 - AluSq SINE Alu -18 295 1 844 195 0 29 chr1 40792870 40793044 -241400620 - FRAM SINE Alu -10 166 1 1889 118 46 46 chr1 40793490 40793796 -241399868 + AluSx SINE Alu 1 306 -6 262 180 0 0 chr1 40793858 40793908 -241399756 + Charlie8 DNA MER1_type 1371 1420 -997 586 220 33 108 chr1 40793958 40794199 -241399465 + MIR SINE MIR 2 224 -38 1638 179 20 33 chr1 40794202 40794496 -241399168 + AluJo SINE Alu 1 292 -20 191 35 0 35 chr1 40794496 40794525 -241399139 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 239 275 187 52 chr1 40794744 40794995 -241398669 + L2 LINE L2 2010 2294 -1020 1236 187 63 71 chr1 40795086 40795450 -241398214 + MLT1A2 LTR MaLR 1 361 -13 482 317 48 0 chr1 40795454 40795599 -241398065 + L2 LINE L2 2794 2945 -369 322 375 14 14 chr1 40795916 40796124 -241397540 + L2 LINE L2 2842 3049 -223 375 283 13 78 chr1 40797117 40797291 -241396373 - MIR SINE MIR -63 145 7 373 305 104 68 chr1 40797584 40797607 -241396057 + MIR SINE MIR 5 26 -236 2351 101 0 0 chr1 40797607 40797904 -241395760 + AluY SINE Alu 1 297 -14 373 305 104 68 chr1 40797904 40798129 -241395535 + MIR SINE MIR 26 262 0 * 597 229 71 44 chr1 40798122 40798305 -241395359 - MIR SINE MIR -64 198 11 327 185 0 0 chr1 40798284 40798338 -241395326 - L2 LINE L2 0 3272 3219 * 244 251 62 73 chr1 40798790 40798848 -241394816 + L1M4 LINE L1 3975 4032 -2114 2328 92 0 0 chr1 40798848 40799141 -241394523 - AluSx SINE Alu -19 293 1 244 251 62 73 chr1 40799141 40799261 -241394403 + L1M4 LINE L1 4032 4151 -1995 1967 166 3 25 chr1 40799724 40800043 -241393621 + AluJb SINE Alu 1 312 0 2468 55 14 0 chr1 40800544 40800837 -241392827 - AluY SINE Alu -14 297 1 354 221 13 143 chr1 40800907 40801061 -241392603 - MIR SINE MIR -81 181 48 228 235 318 0 chr1 40801561 40801646 -241392018 - L2 LINE L2 -2 3270 3159 274 326 11 11 chr1 40802188 40802283 -241391381 + MIR3 SINE MIR 4 98 -110 221 314 81 32 chr1 40802964 40803088 -241390576 + L2 LINE L2 3184 3313 0 24 0 0 0 chr1 40803332 40803356 -241390308 + AT_rich Low_complexity Low_complexity 1 24 0 764 111 0 0 chr1 40803366 40803474 -241390190 - AluJo SINE Alu -175 137 30 2503 69 7 13 chr1 40803492 40803798 -241389866 - AluSx SINE Alu -8 304 1 273 269 131 51 chr1 40803802 40803977 -241389687 - MIR SINE MIR -1 261 73 29 0 0 0 chr1 40804819 40804848 -241388816 + GC_rich Low_complexity Low_complexity 1 29 0 602 248 156 28 chr1 40805294 40805512 -241388152 + MIR SINE MIR 7 252 -10 3886 161 42 6 chr1 40805541 40806226 -241387438 + MER67C LTR ERV1 1 710 0 186 125 31 0 chr1 40806322 40806354 -241387310 + L2 LINE L2 3181 3213 -100 379 47 0 47 chr1 40806403 40806467 -241387197 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 215 288 0 17 chr1 40808977 40809043 -241384621 - MIR SINE MIR -123 85 21 1785 155 41 17 chr1 40809128 40809304 -241384360 - AluJb SINE Alu -15 297 110 252 86 0 0 chr1 40809304 40809339 -241384325 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 155 41 17 chr1 40809339 40809452 -241384212 - AluJb SINE Alu -202 110 1 856 242 35 13 chr1 40810451 40810681 -241382983 + MIR SINE MIR 2 235 -27 632 216 8 84 chr1 40810694 40810747 -241382917 - MIR SINE MIR -1 261 206 309 109 0 0 chr1 40810747 40810793 -241382871 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 2180 82 0 0 chr1 40810798 40811066 -241382598 - AluSx SINE Alu -34 278 11 632 216 8 84 chr1 40811066 40811234 -241382430 - MIR SINE MIR -60 202 57 636 262 87 52 chr1 40811448 40811631 -241382033 - MIR SINE MIR 0 262 66 2436 91 0 3 chr1 40811631 40811938 -241381726 - AluSx SINE Alu -6 306 1 636 262 87 52 chr1 40811938 40812006 -241381658 - MIR SINE MIR -196 66 2 1010 248 120 22 chr1 40813446 40813805 -241379859 + L2 LINE L2 2918 3311 -2 357 294 0 29 chr1 40813816 40813986 -241379678 + (TCTCTG)n Simple_repeat Simple_repeat 4 168 0 846 289 14 5 chr1 40814755 40814963 -241378701 + MIR SINE MIR 45 254 -8 578 50 0 0 chr1 40814982 40815062 -241378602 - Alu SINE Alu -5 306 227 1140 111 0 0 chr1 40815062 40815206 -241378458 - AluSq/x SINE Alu -169 144 1 455 257 173 6 chr1 40815382 40815561 -241378103 + MIR SINE MIR 5 213 -49 2367 97 0 7 chr1 40815589 40815898 -241377766 - AluSq SINE Alu -6 307 1 831 234 78 0 chr1 40816448 40816640 -241377024 + MER63A DNA MER1_type 2 208 -2 917 274 22 4 chr1 40816804 40817034 -241376630 + MIR SINE MIR 2 235 -27 226 351 132 17 chr1 40817047 40817221 -241376443 + L2 LINE L2 2764 2957 -357 1947 153 13 29 chr1 40817247 40817560 -241376104 - AluJb SINE Alu -3 309 2 379 261 75 43 chr1 40817686 40817848 -241375816 + L2 LINE L2 3120 3290 -23 2250 96 3 13 chr1 40817848 40818151 -241375513 - AluSg SINE Alu -10 300 1 379 261 75 43 chr1 40818151 40818176 -241375488 + L2 LINE L2 3290 3313 0 304 271 0 0 chr1 40818230 40818314 -241375350 - MIR SINE MIR -63 145 72 2385 78 7 0 chr1 40818354 40818649 -241375015 - AluY SINE Alu -14 297 1 196 303 79 40 chr1 40818655 40818731 -241374933 - L3 LINE CR1 -10 1567 1489 456 193 85 108 chr1 40818741 40818838 -241374826 + MER58C DNA MER1_type 44 142 -2278 2415 100 0 0 chr1 40818838 40819148 -241374516 + AluSx SINE Alu 1 310 -2 1675 147 28 39 chr1 40819157 40819478 -241374186 + AluJb SINE Alu 1 318 0 456 193 85 108 chr1 40819478 40819545 -241374119 + MER58C DNA MER1_type 150 215 0 460 331 106 13 chr1 40819549 40819851 -241373813 - L3 LINE CR1 -83 1494 1165 556 314 87 0 chr1 40820124 40820331 -241373333 + MIR SINE MIR 15 239 -23 927 242 31 74 chr1 40820419 40820770 -241372894 - LTR16C LTR ERVL 0 491 156 554 264 107 6 chr1 40821428 40821587 -241372077 - MER91A DNA MER1_type -7 189 15 842 281 15 23 chr1 40821997 40822257 -241371407 + MIR SINE MIR 2 259 -3 1410 251 76 16 chr1 40824348 40825050 -241368614 + L2 LINE L2 2574 3311 -2 2336 125 0 0 chr1 40825225 40825537 -241368127 - AluSx SINE Alu 0 312 1 2444 102 0 6 chr1 40825558 40825872 -241367792 - AluSx SINE Alu 0 312 1 204 273 55 0 chr1 40825938 40825993 -241367671 - L2 LINE L2 -56 3216 3159 470 274 121 58 chr1 40826090 40826503 -241367161 + L2 LINE L2 2823 3261 -11 461 305 60 0 chr1 40826504 40826671 -241366993 + MIR SINE MIR 80 256 -6 204 260 78 13 chr1 40826729 40826806 -241366858 + L3b LINE CR1 1294 1375 -208 675 280 115 0 chr1 40826850 40827068 -241366596 + MIR SINE MIR 16 258 -4 395 252 28 21 chr1 40827592 40827735 -241365929 + L2 LINE L2 2887 3030 -242 2361 106 3 0 chr1 40827744 40828056 -241365608 - AluSq SINE Alu 0 313 1 293 229 22 2 chr1 40828179 40828275 -241365389 - MIR SINE MIR -73 135 53 2395 94 7 0 chr1 40828975 40829273 -241364391 + AluSq SINE Alu 1 300 -13 6171 130 34 15 chr1 40829359 40830310 -241363354 - LTR5 LTR ERVK 0 969 1 3174 92 14 0 chr1 40830310 40830754 -241362910 - HERVK LTR ERVK 0 7243 6794 * 3359 147 19 31 chr1 40830749 40831503 -241362161 - HERVK LTR ERVK -1698 5719 4995 532 118 24 0 chr1 40831505 40831590 -241362074 + AluSp/q SINE Alu 217 303 -10 810 118 8 8 chr1 40831717 40831844 -241361820 + MLT1D LTR MaLR 32 158 -347 21 0 0 0 chr1 40831887 40831908 -241361756 + AT_rich Low_complexity Low_complexity 1 21 0 1266 101 0 0 chr1 40831908 40832067 -241361597 - AluSp SINE Alu -15 298 140 2244 124 0 0 chr1 40832073 40832380 -241361284 - AluY SINE Alu -4 307 1 420 337 6 12 chr1 40832448 40832614 -241361050 + L2 LINE L2 2916 3080 -192 243 353 0 16 chr1 40833871 40833993 -241359671 + (TTCA)n Simple_repeat Simple_repeat 1 120 0 * 254 353 0 0 chr1 40833930 40833998 -241359666 + (CCCA)n Simple_repeat Simple_repeat 2 69 0 623 222 10 3 chr1 40833998 40834310 -241359354 + (TCCA)n Simple_repeat Simple_repeat 1 314 0 210 317 24 0 chr1 40834311 40834393 -241359271 - L2 LINE L2 -2 3311 3228 302 351 88 45 chr1 40834454 40834690 -241358974 + L2 LINE L2 371 596 -2718 2307 104 0 0 chr1 40834690 40834988 -241358676 - AluSq SINE Alu -13 300 3 302 351 88 45 chr1 40834988 40835367 -241358297 + L2 LINE L2 596 1012 -2302 1668 174 13 27 chr1 40835483 40835781 -241357883 - AluJb SINE Alu -18 294 1 891 187 46 121 chr1 40835908 40835948 -241357716 - L1MC4 LINE L1 -2 8040 7999 2516 73 0 3 chr1 40835948 40836249 -241357415 + AluY SINE Alu 1 300 -11 891 187 46 121 chr1 40836249 40836556 -241357108 - L1MC4 LINE L1 -43 7999 7719 903 197 94 10 chr1 40836697 40836900 -241356764 + MER58A DNA MER1_type 5 224 0 812 102 57 25 chr1 40836908 40837065 -241356599 + MER3 DNA MER1_type 1 162 -47 858 154 0 22 chr1 40837071 40837207 -241356457 - FLAM_C SINE Alu -10 133 1 206 93 47 47 chr1 40837222 40837265 -241356399 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 2055 138 7 0 chr1 40837265 40837556 -241356108 - AluJb SINE Alu -19 293 1 228 156 16 94 chr1 40837556 40837620 -241356044 + MER3 DNA MER1_type 151 209 0 1523 279 90 76 chr1 40837759 40839085 -241354579 - L1ME3A LINE L1 -230 5940 4633 518 151 11 0 chr1 40839085 40839178 -241354486 - AluJ/FRAM SINE Alu 0 312 219 731 161 0 0 chr1 40839178 40839296 -241354368 - AluJo/FLAM SINE Alu -183 119 2 1523 279 90 76 chr1 40839296 40839535 -241354129 - L1ME3A LINE L1 -1537 4633 4399 2435 106 3 0 chr1 40839535 40839847 -241353817 - AluSq SINE Alu 0 313 1 1523 279 90 76 chr1 40839847 40840072 -241353592 - L1ME3A LINE L1 -1771 4399 4178 1934 146 3 10 chr1 40840072 40840367 -241353297 + AluJo SINE Alu 1 293 -19 1523 279 90 76 chr1 40840367 40840465 -241353199 - L1ME3A LINE L1 -1992 4178 4083 990 133 5 0 chr1 40840465 40840661 -241353003 + L1MA7 LINE L1 6095 6291 0 1523 279 90 76 chr1 40840661 40840995 -241352669 - L1ME3A LINE L1 -2087 4083 3589 595 310 96 55 chr1 40841018 40841431 -241352233 - L1ME3A LINE L1 -2775 3371 2976 2382 95 7 0 chr1 40841431 40841736 -241351928 - AluSp SINE Alu -6 307 1 595 310 96 55 chr1 40841736 40841983 -241351681 - L1ME3A LINE L1 -3170 2976 2740 1551 138 22 116 chr1 40841983 40842071 -241351593 + AluJo SINE Alu 24 119 -193 2236 110 30 0 chr1 40842071 40842371 -241351293 + AluSg SINE Alu 1 309 -1 1551 138 22 116 chr1 40842371 40842600 -241351064 + AluJo SINE Alu 119 311 -1 595 310 96 55 chr1 40842600 40842957 -241350707 - L1ME3A LINE L1 -3406 2740 2296 1818 157 14 20 chr1 40842957 40843250 -241350414 - AluJo SINE Alu -21 291 1 595 310 96 55 chr1 40843250 40843422 -241350242 - L1ME3A LINE L1 -3850 2296 2132 312 264 121 44 chr1 40843511 40843693 -241349971 - L1M4 LINE L1 -2161 3968 3773 935 267 50 34 chr1 40843927 40844812 -241348852 - L1MEd LINE L1 -4649 1482 695 703 193 45 87 chr1 40844821 40845085 -241348579 - MER2 DNA MER2_type -1 344 92 964 147 6 62 chr1 40845088 40845265 -241348399 - AluJb SINE Alu -16 296 130 547 30 0 0 chr1 40845302 40845368 -241348296 - AluY SINE Alu -181 130 65 2547 76 3 0 chr1 40845550 40845854 -241347810 + AluSg SINE Alu 1 305 -5 353 284 57 14 chr1 40846187 40846328 -241347336 - MIR SINE MIR -34 228 82 370 242 47 47 chr1 40846564 40846692 -241346972 + MIR SINE MIR 22 149 -113 2409 68 3 3 chr1 40846756 40847048 -241346616 - AluSc SINE Alu -12 297 6 2313 57 57 0 chr1 40847695 40847976 -241345688 - AluY SINE Alu -14 297 1 415 339 80 30 chr1 40848057 40848396 -241345268 + L1MC4a LINE L1 5532 5887 -1921 285 343 93 11 chr1 40849235 40849515 -241344149 + L2 LINE L2 2383 2685 -629 1826 173 0 27 chr1 40849785 40850085 -241343579 - AluJo SINE Alu -20 292 1 2134 130 3 0 chr1 40850482 40850775 -241342889 - AluJb SINE Alu -18 294 1 518 264 169 5 chr1 40851044 40851245 -241342419 - MIR SINE MIR 0 262 29 2287 98 17 0 chr1 40851253 40851540 -241342124 - AluSp SINE Alu -21 292 1 2450 100 0 0 chr1 40852316 40852626 -241341038 - AluSx SINE Alu -2 310 1 1017 233 71 0 chr1 40852707 40852947 -241340717 - MIR SINE MIR 0 262 6 189 0 0 0 chr1 40852993 40853014 -241340650 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 24 0 0 0 chr1 40854185 40854209 -241339455 + GC_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr1 40854279 40854309 -241339355 + GC_rich Low_complexity Low_complexity 1 30 0 374 290 9 0 chr1 40855455 40855562 -241338102 - MIR SINE MIR -123 139 32 266 278 155 10 chr1 40855557 40855654 -241338010 + MIR SINE MIR 39 149 -113 * 258 56 0 0 chr1 40856093 40856129 -241337535 + (CA)n Simple_repeat Simple_repeat 2 37 0 453 256 149 6 chr1 40856480 40856648 -241337016 + MIR SINE MIR 1 192 -70 2280 120 0 0 chr1 40856659 40856958 -241336706 + AluSq SINE Alu 1 299 -14 401 240 70 0 chr1 40856966 40857066 -241336598 - L2 LINE L2 -5 3308 3202 1950 154 7 13 chr1 40857117 40857422 -241336242 - AluJo SINE Alu -9 303 1 482 194 0 30 chr1 40857454 40857559 -241336105 + MIR3 SINE MIR 58 160 -48 225 0 0 0 chr1 40858115 40858140 -241335524 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 422 310 189 22 chr1 40858537 40858706 -241334958 + L2 LINE L2 2837 2976 -337 1377 141 50 70 chr1 40858706 40859004 -241334660 + AluJo SINE Alu 2 293 -19 422 310 189 22 chr1 40859004 40859241 -241334423 + L2 LINE L2 2976 3311 -2 236 302 75 38 chr1 40859980 40860139 -241333525 - MER5A DNA MER1_type -12 177 13 2067 134 7 0 chr1 40860305 40860610 -241333054 - AluSx SINE Alu -5 307 1 767 149 8 30 chr1 40860697 40860831 -241332833 + FLAM_C SINE Alu 1 131 -2 1818 89 0 27 chr1 40860932 40861190 -241332474 - AluSx SINE Alu -6 306 56 436 188 248 15 chr1 40861485 40861618 -241332046 + MER5B DNA MER1_type 7 170 -8 220 279 101 0 chr1 40862619 40862698 -241330966 - MIR SINE MIR -59 203 117 624 196 0 60 chr1 40862705 40862838 -241330826 + FLAM_A SINE Alu 1 125 -8 1887 80 87 18 chr1 40862848 40863124 -241330540 + AluY SINE Alu 1 295 -16 2220 100 0 3 chr1 40863147 40863446 -241330218 + AluSq SINE Alu 1 298 -15 413 284 87 106 chr1 40863451 40863726 -241329938 + L1M4 LINE L1 4056 4325 -1821 239 250 95 0 chr1 40863727 40863811 -241329853 - MIR SINE MIR -121 141 50 2119 110 10 0 chr1 40863820 40864119 -241329545 + AluSx SINE Alu 1 302 -10 383 242 64 83 chr1 40864131 40864263 -241329401 - MER5B DNA MER1_type -3 175 45 2342 67 6 16 chr1 40864263 40864577 -241329087 + AluY SINE Alu 1 311 0 383 242 64 83 chr1 40864577 40864601 -241329063 - MER5B DNA MER1_type -133 45 22 242 237 0 191 chr1 40864605 40864778 -241328886 + MER5A DNA MER1_type 50 189 0 958 141 54 27 chr1 40864786 40864970 -241328694 - MER5A DNA MER1_type 0 189 1 2021 112 27 0 chr1 40865015 40865311 -241328353 + AluSx SINE Alu 1 304 -8 212 325 88 18 chr1 40865355 40865469 -241328195 + MIR SINE MIR 19 140 -122 1778 108 104 0 chr1 40866268 40866536 -241327128 + AluSg1 SINE Alu 1 296 -13 335 195 37 0 chr1 40866683 40866765 -241326899 - L1MC/D LINE L1 -2000 5808 5724 305 336 16 8 chr1 40866803 40866931 -241326733 - L1MC/D LINE L1 -2080 5728 5600 2248 90 0 3 chr1 40867301 40867600 -241326064 - AluSq SINE Alu -15 298 1 2257 106 0 0 chr1 40867813 40868114 -241325550 - AluSx SINE Alu -11 301 1 212 355 91 8 chr1 40868145 40868266 -241325398 - MIR SINE MIR -51 211 81 459 320 27 13 chr1 40870144 40870294 -241323370 - MIR SINE MIR -85 177 26 844 139 42 54 chr1 40870886 40871052 -241322612 - AluJo/FRAM SINE Alu -1 311 148 611 138 0 0 chr1 40871048 40871135 -241322529 - AluJ/FLAM SINE Alu -223 89 3 * 696 167 0 0 chr1 40871210 40871318 -241322346 - MER2 DNA MER2_type -4 341 234 2226 90 3 7 chr1 40871319 40871619 -241322045 - AluSx SINE Alu -7 305 7 546 89 0 0 chr1 40871626 40871705 -241321959 - AluJ/FRAM SINE Alu -2 310 232 2400 67 0 16 chr1 40871752 40872066 -241321598 - AluY SINE Alu -2 309 1 1186 126 49 54 chr1 40872067 40872160 -241321504 - MER2 DNA MER2_type -117 228 136 2039 114 7 7 chr1 40872160 40872458 -241321206 + AluSx SINE Alu 1 298 -14 1186 126 49 54 chr1 40872458 40872587 -241321077 - MER2 DNA MER2_type -209 136 7 280 287 51 81 chr1 40873511 40873807 -241319857 - L2 LINE L2 -31 3241 2955 1699 213 76 45 chr1 40874390 40874791 -241318873 - L1MC4 LINE L1 -159 7883 7461 1497 163 91 4 chr1 40874791 40875055 -241318609 + AluJb SINE Alu 5 291 -21 1699 213 76 45 chr1 40875055 40875166 -241318498 - L1MC4 LINE L1 -581 7461 7355 247 204 34 23 chr1 40875177 40875265 -241318399 - L1ME2 LINE L1 0 6164 6076 2168 112 0 40 chr1 40876191 40876514 -241317150 + AluSx SINE Alu 1 310 -2 2407 273 14 17 chr1 40927262 40927924 -241265740 - L1MEc LINE L1 -5702 694 35 1513 278 130 16 chr1 40927929 40928931 -241264733 + L2 LINE L2 2199 3313 0 209 317 83 25 chr1 40929753 40929873 -241263791 - MIR SINE MIR -68 194 68 897 266 120 36 chr1 40929967 40930324 -241263340 + L2 LINE L2 2925 3311 -2 355 262 0 0 chr1 40930905 40930989 -241262675 + MIR SINE MIR 32 115 -147 270 347 44 52 chr1 40931079 40931330 -241262334 + L2 LINE L2 2995 3243 -29 673 280 30 34 chr1 40931511 40931680 -241261984 - MIR SINE MIR -25 237 66 760 242 82 26 chr1 40931680 40931874 -241261790 + MER63A DNA MER1_type 3 207 -3 673 280 30 34 chr1 40931874 40931922 -241261742 - MIR SINE MIR -196 66 19 363 301 147 67 chr1 40931923 40932222 -241261442 + L1MC4a LINE L1 5852 6174 -1634 222 37 0 0 chr1 40932874 40932901 -241260763 + (TG)n Simple_repeat Simple_repeat 2 28 0 1764 173 0 0 chr1 40932901 40933185 -241260479 - AluJb SINE Alu -28 284 1 217 222 235 12 chr1 40933469 40933550 -241260114 + L3 LINE CR1 1352 1450 -127 797 192 6 18 chr1 40933567 40933734 -241259930 + MLT1A1 LTR MaLR 229 365 0 344 325 8 0 chr1 40934330 40934447 -241259217 - L2 LINE L2 -16 3297 3180 784 272 25 42 chr1 40934791 40935030 -241258634 - MIR SINE MIR 0 262 28 225 289 7 89 chr1 40935145 40935280 -241258384 + MIR SINE MIR 80 203 -59 511 284 74 37 chr1 40937102 40937317 -241256347 + MIR SINE MIR 5 227 -35 294 180 0 0 chr1 40937323 40937384 -241256280 + CT-rich Low_complexity Low_complexity 3 63 0 1919 138 0 22 chr1 40937825 40938136 -241255528 - AluSx SINE Alu -8 304 1 234 0 0 0 chr1 40938161 40938187 -241255477 + (TC)n Simple_repeat Simple_repeat 1 26 0 243 321 18 27 chr1 40938293 40938405 -241255259 + Charlie8 DNA MER1_type 1 111 -2306 300 234 0 0 chr1 40938505 40938569 -241255095 + Charlie8 DNA MER1_type 2354 2417 0 527 318 46 15 chr1 40939048 40939243 -241254421 + MIR SINE MIR 1 201 -61 591 270 141 0 chr1 40939251 40939414 -241254250 + MER5A DNA MER1_type 4 189 0 290 252 119 28 chr1 40939511 40939654 -241254010 + MIR SINE MIR 41 196 -66 1722 164 30 0 chr1 40939762 40940061 -241253603 - AluJo SINE Alu -4 308 1 280 366 32 8 chr1 40940061 40940184 -241253480 - MIR SINE MIR -113 149 24 235 268 0 0 chr1 40940718 40940774 -241252890 + C-rich Low_complexity Low_complexity 3 58 0 282 358 53 42 chr1 40940960 40941315 -241252349 + L2 LINE L2 2225 2583 -731 896 201 64 137 chr1 40941387 40941809 -241251855 + LTR16C LTR ERVL 101 491 0 267 279 23 12 chr1 40942726 40942812 -241250852 - L3b LINE CR1 -199 1384 1298 209 204 20 0 chr1 40943384 40943433 -241250231 + (CTGGGG)n Simple_repeat Simple_repeat 3 52 0 302 288 39 0 chr1 40943721 40943874 -241249790 + (CA)n Simple_repeat Simple_repeat 2 160 0 306 287 27 13 chr1 40943925 40944075 -241249589 + (CA)n Simple_repeat Simple_repeat 1 152 0 233 298 19 10 chr1 40944322 40944426 -241249238 + (CA)n Simple_repeat Simple_repeat 2 106 0 210 71 0 0 chr1 40944677 40944705 -241248959 + (CA)n Simple_repeat Simple_repeat 1 28 0 857 213 51 23 chr1 40944886 40945102 -241248562 - MIR SINE MIR -12 250 29 303 296 76 15 chr1 40945707 40945839 -241247825 + MIR SINE MIR 13 152 -110 345 265 8 45 chr1 40946235 40946873 -241246791 + (CAGCT)n Simple_repeat Simple_repeat 1 614 0 * 390 287 0 28 chr1 40946794 40947330 -241246334 + (CAGCC)n Simple_repeat Simple_repeat 1 521 0 345 247 49 0 chr1 40949060 40949141 -241244523 + L2 LINE L2 3188 3272 0 301 45 0 0 chr1 40949193 40949237 -241244427 - L2 LINE L2 0 3313 3270 240 262 24 36 chr1 40949916 40950000 -241243664 + (CATG)n Simple_repeat Simple_repeat 3 85 0 478 226 30 30 chr1 40950165 40950298 -241243366 - MIR3 SINE MIR -35 173 41 209 226 19 0 chr1 40950420 40950473 -241243191 - L2 LINE L2 0 3272 3219 332 280 21 0 chr1 40952546 40952639 -241241025 + MIR SINE MIR 42 136 -72 249 33 0 0 chr1 40952642 40952672 -241240992 + (TAA)n Simple_repeat Simple_repeat 2 31 0 266 254 290 41 chr1 40952683 40952852 -241240812 - MIR3 SINE MIR -17 245 35 2305 92 3 0 chr1 40952919 40953224 -241240440 - AluSp SINE Alu -7 306 1 464 146 130 24 chr1 40953297 40953420 -241240244 + MER53 DNA DNA 7 142 -47 208 256 43 77 chr1 40953567 40953684 -241239980 + MIR SINE MIR 108 220 -42 239 340 95 5 chr1 40953929 40954089 -241239575 + MIR3 SINE MIR 46 218 -35 2270 77 0 17 chr1 40955002 40955301 -241238363 - AluY SINE Alu -17 294 1 355 283 5 0 chr1 40955418 40955613 -241238051 + (CA)n Simple_repeat Simple_repeat 1 196 0 1127 97 0 0 chr1 40956066 40956220 -241237444 + AluSg/x SINE Alu 159 312 0 317 355 14 22 chr1 40956330 40956468 -241237196 + MER5A DNA MER1_type 38 185 -4 202 296 45 38 chr1 40956352 40956484 -241237180 - MER5A DNA MER1_type -56 133 1 * 283 340 49 39 chr1 40956599 40956770 -241236894 - MIR SINE MIR -14 194 21 899 276 111 8 chr1 40956774 40957136 -241236528 - MLT1I LTR MaLR -3 406 8 189 0 0 0 chr1 40957268 40957289 -241236375 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 264 306 0 54 chr1 40957345 40957456 -241236208 + MIR SINE MIR 41 145 -63 348 306 88 39 chr1 40958018 40958238 -241235426 - HAL1b LINE L1 -1 6120 1129 671 151 8 0 chr1 40958265 40958391 -241235273 + (CCCA)n Simple_repeat Simple_repeat 3 129 0 225 301 46 107 chr1 40958628 40958844 -241234820 + L2 LINE L2 3020 3222 -50 349 250 97 28 chr1 40959207 40959351 -241234313 - MIR3 SINE MIR -20 188 35 389 272 50 82 chr1 40959960 40960206 -241233458 - MIR SINE MIR -7 255 20 * 797 281 16 31 chr1 40960143 40960399 -241233265 + MIR SINE MIR 11 262 0 378 289 176 0 chr1 40960419 40960578 -241233086 - MIR SINE MIR -12 250 64 701 269 130 46 chr1 40961078 40961401 -241232263 - L2 LINE L2 0 3313 2964 349 281 94 10 chr1 40961607 40961799 -241231865 + L2 LINE L2 2836 3043 -229 287 267 35 17 chr1 40962864 40962980 -241230684 - L2 LINE L2 0 3313 3196 279 264 96 40 chr1 40963137 40963262 -241230402 + MIR SINE MIR 59 190 -72 285 315 22 0 chr1 40963353 40963442 -241230222 + L2 LINE L2 3163 3253 -19 653 241 6 0 chr1 40964558 40964720 -241228944 - MIR SINE MIR -92 170 8 599 277 55 20 chr1 40966709 40966911 -241226753 + MIR SINE MIR 54 262 0 423 254 89 62 chr1 40966959 40967183 -241226481 + MIR SINE MIR 19 248 -14 256 260 135 10 chr1 40967838 40967934 -241225730 - MIR SINE MIR -81 127 20 2396 88 0 3 chr1 40967976 40968273 -241225391 + AluSc SINE Alu 1 296 -13 2119 127 6 22 chr1 40968585 40968900 -241224764 + AluSx SINE Alu 1 310 -2 280 356 62 10 chr1 40969099 40969307 -241224357 + MIR SINE MIR 42 260 -2 204 296 42 0 chr1 40969636 40969707 -241223957 - MIR SINE MIR -103 159 86 2176 108 4 0 chr1 40969719 40969997 -241223667 + AluSq SINE Alu 11 289 -24 311 0 0 25 chr1 40970005 40970045 -241223619 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 293 299 0 11 chr1 40970214 40970301 -241223363 - MIR SINE MIR -93 115 30 264 130 0 0 chr1 40970411 40970457 -241223207 + (GGCTG)n Simple_repeat Simple_repeat 1 46 0 2262 109 3 0 chr1 40970958 40971252 -241222412 - AluSx SINE Alu -17 295 1 552 217 120 49 chr1 40972869 40973053 -241220611 - MER63A DNA MER1_type -13 197 1 645 311 55 45 chr1 40973071 40973380 -241220284 + LTR16C LTR ERVL 179 490 -1 728 238 121 4 chr1 40974743 40974974 -241218690 + MLT1J2 LTR MaLR 73 330 -120 2196 213 104 29 chr1 40974986 40975564 -241218100 + MLT1E2 LTR MaLR 6 626 0 1669 199 30 7 chr1 40975602 40975899 -241217765 + AluJo SINE Alu 1 304 -8 442 213 37 19 chr1 40976152 40976260 -241217404 - MIR3 SINE MIR -86 122 13 195 129 0 0 chr1 40976738 40976769 -241216895 + (TG)n Simple_repeat Simple_repeat 1 31 0 209 203 25 51 chr1 40978049 40978128 -241215536 + (TGG)n Simple_repeat Simple_repeat 2 78 0 277 291 32 19 chr1 40978163 40978321 -241215343 + (ATGGTG)n Simple_repeat Simple_repeat 1 160 0 552 292 73 11 chr1 40979084 40979296 -241214368 + MIR SINE MIR 7 228 -34 372 348 39 17 chr1 40979786 40979967 -241213697 + MIR SINE MIR 3 187 -75 1663 227 113 18 chr1 40979968 40980484 -241213180 + MLT1E LTR MaLR 1 615 -11 468 0 0 0 chr1 40980718 40980770 -241212894 + (CA)n Simple_repeat Simple_repeat 2 53 0 215 312 11 0 chr1 40981130 40981223 -241212441 + GA-rich Low_complexity Low_complexity 2 95 0 397 262 19 0 chr1 40982564 40982667 -241210997 + MER103 DNA DNA 58 162 -4 232 309 0 0 chr1 40982975 40983030 -241210634 + (TG)n Simple_repeat Simple_repeat 1 55 0 186 43 0 0 chr1 40983340 40983363 -241210301 + (TA)n Simple_repeat Simple_repeat 2 24 0 1689 180 122 20 chr1 40983371 40983922 -241209742 + MLT1E1 LTR MaLR 1 592 -1 254 267 50 17 chr1 40983969 40984089 -241209575 + (CATATA)n Simple_repeat Simple_repeat 6 129 0 249 108 0 0 chr1 40984097 40984134 -241209530 + (CA)n Simple_repeat Simple_repeat 2 38 0 363 184 53 0 chr1 40984231 40984307 -241209357 - MIR SINE MIR 0 262 183 950 175 16 21 chr1 40984851 40985045 -241208619 - MIR SINE MIR -5 257 65 245 272 25 12 chr1 40985950 40986031 -241207633 + (CCAA)n Simple_repeat Simple_repeat 1 82 0 239 247 117 0 chr1 40986067 40986144 -241207520 - L2 LINE L2 -50 3222 3137 673 226 55 0 chr1 40986409 40986573 -241207091 + MIR SINE MIR 89 261 -1 180 200 0 0 chr1 40988628 40988683 -241204981 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 216 0 0 chr1 40988735 40988832 -241204832 + (CA)n Simple_repeat Simple_repeat 1 97 0 290 221 0 26 chr1 40988835 40988912 -241204752 + (CATA)n Simple_repeat Simple_repeat 1 75 0 387 237 0 0 chr1 40988926 40989103 -241204561 + (CA)n Simple_repeat Simple_repeat 2 178 0 259 253 6 6 chr1 40989120 40989286 -241204378 + (CA)n Simple_repeat Simple_repeat 1 166 0 222 229 0 0 chr1 40990037 40990107 -241203557 + (TG)n Simple_repeat Simple_repeat 2 71 0 223 191 43 0 chr1 40990742 40990789 -241202875 + L2 LINE L2 3223 3271 -1 483 206 3 0 chr1 40990874 40990980 -241202684 - MIR SINE MIR -65 143 35 1427 273 112 8 chr1 40991035 40991506 -241202158 + MLT1H1 LTR MaLR 13 552 -3 200 167 24 24 chr1 40991510 40991594 -241202070 + (CA)n Simple_repeat Simple_repeat 2 85 0 201 74 0 0 chr1 40992522 40992549 -241201115 + (TG)n Simple_repeat Simple_repeat 1 27 0 1001 289 113 47 chr1 40992751 40993708 -241199956 - L2 LINE L2 -57 3256 2243 2785 174 29 15 chr1 40993848 40994395 -241199269 + L1MB3 LINE L1 5628 6182 -1 818 236 10 15 chr1 40994395 40994594 -241199070 + MIR SINE MIR 19 216 -46 612 198 0 0 chr1 40994673 40994779 -241198885 + AluJb SINE Alu 21 126 -186 442 128 96 0 chr1 40994845 40994939 -241198725 - L1MB3 LINE L1 -1 6182 6080 2363 84 20 0 chr1 40995833 40996129 -241197535 - AluSc SINE Alu -7 302 1 534 160 16 24 chr1 40996191 40996307 -241197357 - MLT1F LTR MaLR 0 542 428 3462 107 12 0 chr1 40996307 40996791 -241196873 - MER1A DNA MER1_type 0 529 40 1946 197 72 58 chr1 40996771 40997186 -241196478 - MLT1F1 LTR MaLR -77 490 83 * 1904 153 38 0 chr1 40997186 40997474 -241196190 - AluJb SINE Alu -13 299 1 1946 197 72 58 chr1 40997474 40997517 -241196147 - MLT1F1 LTR MaLR -484 83 42 2257 107 0 3 chr1 40997517 40997815 -241195849 - AluSc SINE Alu -12 297 1 1946 197 72 58 chr1 40997815 40997838 -241195826 - MLT1F1 LTR MaLR -525 42 1 481 330 47 34 chr1 40998167 40998400 -241195264 + MIR SINE MIR 3 238 -24 373 258 133 12 chr1 40999213 40999376 -241194288 + MIR SINE MIR 16 197 -59 583 181 181 0 chr1 40999619 40999774 -241193890 + MER5A DNA MER1_type 6 188 -1 262 289 13 13 chr1 41000057 41000206 -241193458 + (TG)n Simple_repeat Simple_repeat 1 149 0 201 147 0 0 chr1 41000609 41000643 -241193021 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 215 280 20 0 chr1 41001519 41001569 -241192095 - L2 LINE L2 -86 3186 3136 625 266 35 25 chr1 41001692 41001891 -241191773 + MIR SINE MIR 46 246 -16 322 316 18 26 chr1 41003003 41003117 -241190547 - MIR SINE MIR -13 249 137 402 245 211 20 chr1 41003148 41003352 -241190312 + L2 LINE L2 3011 3253 -60 1989 100 4 0 chr1 41003444 41003705 -241189959 + AluSx SINE Alu 44 305 -7 1096 234 150 28 chr1 41004512 41004896 -241188768 + LTR33 LTR ERVL 5 456 -65 2218 126 3 0 chr1 41004896 41005190 -241188474 - AluSx SINE Alu -17 295 1 1096 234 150 28 chr1 41005190 41005266 -241188398 + LTR33 LTR ERVL 456 521 0 235 114 0 0 chr1 41006342 41006377 -241187287 + MIR SINE MIR 120 154 -108 456 256 12 22 chr1 41006390 41006594 -241187070 - MIR3 SINE MIR -48 214 14 1115 278 80 44 chr1 41006630 41007401 -241186263 - L1MC4a LINE L1 -743 5403 4662 2872 19 0 0 chr1 41007401 41007711 -241185953 + AluYb8 SINE Alu 1 310 -8 507 73 0 0 chr1 41007711 41007779 -241185885 + (TA)n Simple_repeat Simple_repeat 2 69 0 1115 278 80 44 chr1 41007779 41007927 -241185737 - L1MC4a LINE L1 -1130 5016 4875 4872 130 42 37 chr1 41007935 41008278 -241185386 - L1MA9 LINE L1 -6 6306 5964 1654 298 81 39 chr1 41008278 41008445 -241185219 - L1PA10 LINE L1 -227 5941 5782 2339 104 3 3 chr1 41008445 41008754 -241184910 - AluSx SINE Alu -3 309 1 1654 298 81 39 chr1 41008754 41009451 -241184213 - L1PA10 LINE L1 -386 5782 5116 1864 155 28 0 chr1 41009451 41009735 -241183929 + AluJo SINE Alu 5 296 -16 1654 298 81 39 chr1 41009735 41010545 -241183119 - L1PA10 LINE L1 -1052 5116 3700 813 140 0 0 chr1 41010547 41010683 -241182981 + (TG)n Simple_repeat Simple_repeat 1 136 0 338 358 28 32 chr1 41010692 41010910 -241182754 - L1MC4a LINE L1 -2469 3677 3461 517 268 16 0 chr1 41012478 41012601 -241181063 - L2 LINE L2 -1 3312 3188 241 261 0 14 chr1 41012601 41012670 -241180994 - MLT1K LTR MaLR -334 254 187 372 341 55 38 chr1 41014158 41014577 -241179087 + L2 LINE L2 2550 2975 -339 635 281 19 19 chr1 41014593 41014803 -241178861 + L2 LINE L2 2355 2564 -750 600 253 93 0 chr1 41014833 41014983 -241178681 - LTR16C LTR ERVL -128 363 200 209 170 0 64 chr1 41015488 41015535 -241178129 + L2 LINE L2 3224 3267 -5 310 318 16 8 chr1 41015540 41015669 -241177995 + L2 LINE L2 2704 2833 -481 276 352 24 0 chr1 41015913 41016038 -241177626 + L2 LINE L2 2934 3061 -211 315 235 50 50 chr1 41016199 41016318 -241177346 - L1ME3 LINE L1 0 6162 6044 2108 124 17 3 chr1 41016320 41016619 -241177045 + AluSx SINE Alu 1 303 -9 453 250 16 16 chr1 41016619 41016743 -241176921 - MIR SINE MIR -63 145 22 1059 174 0 0 chr1 41016776 41016960 -241176704 + MER53 DNA DNA 5 188 -1 184 268 159 36 chr1 41016992 41017130 -241176534 + L2 LINE L2 3114 3268 -4 1988 144 20 3 chr1 41017235 41017513 -241176151 + AluJo SINE Alu 1 286 -26 243 61 0 0 chr1 41017513 41017546 -241176118 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 1988 144 20 3 chr1 41017546 41017566 -241176098 + AluJo SINE Alu 286 304 -8 277 242 11 0 chr1 41017726 41017795 -241175869 - MIR SINE MIR -63 145 94 334 276 31 0 chr1 41018382 41018480 -241175184 + (CCCCAG)n Simple_repeat Simple_repeat 6 106 0 207 264 36 100 chr1 41018896 41019006 -241174658 + L3 LINE CR1 1038 1140 -437 515 323 121 36 chr1 41019518 41019849 -241173815 - L2 LINE L2 0 3313 2955 423 341 76 9 chr1 41019962 41020185 -241173479 - MIR SINE MIR -7 255 18 2250 133 44 29 chr1 41020555 41020939 -241172725 + MLT1B LTR MaLR 1 390 0 3189 205 65 16 chr1 41021774 41022534 -241171130 - MER21B LTR ERV1 -54 809 13 605 241 7 22 chr1 41022709 41022846 -241170818 + MIR SINE MIR 47 181 -81 257 326 20 10 chr1 41022854 41022952 -241170712 - MIR SINE MIR -142 120 22 377 253 81 0 chr1 41023619 41023706 -241169958 + MIR SINE MIR 50 143 -65 1527 127 4 0 chr1 41023749 41023978 -241169686 + L1PB1 LINE L1 5922 6151 0 2212 105 30 13 chr1 41024195 41024500 -241169164 - AluSx SINE Alu -2 310 1 626 249 65 5 chr1 41024634 41024819 -241168845 + MIR SINE MIR 54 249 -13 215 319 29 68 chr1 41024841 41025048 -241168616 + L2 LINE L2 1787 1985 -1329 2474 190 26 6 chr1 41025904 41026394 -241167270 + MLT1D LTR MaLR 6 505 0 358 330 74 51 chr1 41026399 41026832 -241166832 - L2 LINE L2 -102 3170 2745 646 268 29 14 chr1 41026838 41027047 -241166617 + MLT1H LTR MaLR 13 224 -325 397 190 10 80 chr1 41027147 41027247 -241166417 + MLT1H LTR MaLR 454 546 -3 1035 232 65 127 chr1 41028001 41028193 -241165471 - L2 LINE L2 -422 2892 2690 218 54 0 27 chr1 41028193 41028230 -241165434 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 2219 73 4 4 chr1 41028230 41028503 -241165161 - AluSc SINE Alu -32 277 5 1035 232 65 127 chr1 41028503 41028764 -241164900 - L2 LINE L2 -623 2691 2503 200 86 29 0 chr1 41028764 41028799 -241164865 + (TG)n Simple_repeat Simple_repeat 1 36 0 1035 232 65 127 chr1 41028799 41029115 -241164549 - L2 LINE L2 -811 2503 2169 394 306 21 42 chr1 41029119 41029263 -241164401 + L2 LINE L2 3171 3311 -2 369 243 37 37 chr1 41030311 41030418 -241163246 + MIR SINE MIR 100 206 -56 319 253 84 0 chr1 41030422 41030505 -241163159 + MIR SINE MIR 119 208 -54 295 200 46 0 chr1 41030523 41030588 -241163076 + MIR SINE MIR 139 206 -56 340 186 43 0 chr1 41030603 41030673 -241162991 + MIR SINE MIR 134 206 -56 394 283 26 9 chr1 41030688 41030801 -241162863 + MIR SINE MIR 134 248 -14 472 223 97 0 chr1 41030979 41031082 -241162582 + MER81 DNA DNA 2 114 0 271 299 41 21 chr1 41031779 41031876 -241161788 + MIR SINE MIR 45 143 -65 608 48 12 0 chr1 41032143 41032227 -241161437 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 373 200 0 0 chr1 41032227 41032292 -241161372 - FLAM_A SINE Alu -16 117 53 271 285 85 50 chr1 41032446 41032636 -241161028 + MIR SINE MIR 2 195 -67 2319 115 0 0 chr1 41032790 41033086 -241160578 - AluSq SINE Alu -17 296 1 827 216 51 28 chr1 41033885 41034356 -241159308 + LTR33 LTR ERVL 13 521 0 392 314 109 29 chr1 41035323 41035562 -241158102 + L2 LINE L2 2542 2799 -515 223 314 89 96 chr1 41035589 41035860 -241157804 + L2 LINE L2 2992 3260 -12 * 765 226 211 64 chr1 41035834 41036241 -241157423 - L2 LINE L2 0 3313 2847 271 214 22 34 chr1 41036251 41036340 -241157324 - MER97a DNA MER1_type? -715 179 92 214 278 0 0 chr1 41036463 41036517 -241157147 + MIR SINE MIR 69 122 -140 1687 159 4 0 chr1 41036569 41036833 -241156831 - AluJb SINE Alu -46 266 2 1598 211 51 33 chr1 41037320 41037372 -241156292 - MLT1C LTR MaLR 0 467 417 375 23 0 0 chr1 41037372 41037416 -241156248 + (CA)n Simple_repeat Simple_repeat 2 45 0 1598 211 51 33 chr1 41037416 41037817 -241155847 - MLT1C LTR MaLR -50 417 6 2583 72 3 0 chr1 41038471 41038777 -241154887 + AluSc SINE Alu 1 307 -2 441 185 12 7 chr1 41038930 41039026 -241154638 - MIR SINE MIR -46 162 69 410 243 81 27 chr1 41040276 41040387 -241153277 - MIR SINE MIR -126 136 20 605 196 9 0 chr1 41043353 41043465 -241150199 - MER45A DNA AcHobo -3 175 63 451 319 128 15 chr1 41043534 41043807 -241149857 - LTR16C LTR ERVL -25 466 163 1593 162 25 32 chr1 41043808 41044122 -241149542 - AluJo SINE Alu 0 312 1 341 205 12 24 chr1 41045274 41045357 -241148307 + MLT1J2 LTR MaLR 1 82 -368 318 337 48 42 chr1 41045359 41045525 -241148139 - L2 LINE L2 -234 3038 2872 237 273 53 61 chr1 41046104 41046236 -241147428 - MIR SINE MIR -95 167 37 466 304 65 18 chr1 41046652 41046820 -241146844 + MIR SINE MIR 20 195 -67 483 304 187 38 chr1 41046872 41048294 -241145370 + L2 LINE L2 1224 3306 -7 909 238 35 5 chr1 41049029 41049231 -241144433 + MIR SINE MIR 7 214 -48 1838 86 0 16 chr1 41049399 41049644 -241144020 + AluSq SINE Alu 73 313 0 488 282 40 0 chr1 41049712 41049836 -241143828 + MIR3 SINE MIR 31 159 -49 657 230 45 28 chr1 41049845 41050023 -241143641 + MER117 DNA MER1_type 16 196 -1 673 224 25 84 chr1 41051168 41051405 -241142259 + MIR SINE MIR 37 259 -3 1250 214 135 77 chr1 41052599 41053094 -241140570 - MLT1H LTR MaLR 0 549 26 1913 221 66 17 chr1 41054289 41054759 -241138905 - MLT1D LTR MaLR -12 493 1 746 300 63 4 chr1 41054759 41055012 -241138652 + LTR16C LTR ERVL 224 491 0 190 357 36 12 chr1 41055106 41055190 -241138474 + MIR SINE MIR 1 86 -176 596 256 121 20 chr1 41055641 41055938 -241137726 + Charlie7 DNA MER1_type 43 369 -2243 1299 246 92 17 chr1 41055941 41056400 -241137264 - L1ME3A LINE L1 -5 6165 5673 682 239 173 7 chr1 41056404 41056710 -241136954 + Charlie7 DNA MER1_type 353 709 -1903 2621 82 8 45 chr1 41056783 41057071 -241136593 - L1PB1 LINE L1 -7 6144 5874 1717 79 5 0 chr1 41057071 41057286 -241136378 + AluY SINE Alu 84 299 -12 2621 82 8 45 chr1 41057286 41057398 -241136266 - L1PB1 LINE L1 -277 5874 5759 1292 232 74 6 chr1 41057447 41057770 -241135894 + MLT1I LTR MaLR 65 409 0 3063 232 52 17 chr1 41057779 41058659 -241135005 + Charlie7 DNA MER1_type 716 1626 -986 7229 26 0 5 chr1 41058651 41059605 -241134059 - L1PA4 LINE L1 0 6155 5199 7235 27 5 2 chr1 41058659 41059613 -241134051 - L1PA4 LINE L1 -8 6147 5191 2375 97 7 7 chr1 41059605 41059915 -241133749 - AluY SINE Alu -1 310 1 382 154 77 0 chr1 41059915 41059993 -241133671 + Charlie7 DNA MER1_type 1612 1695 -917 369 86 0 0 chr1 41060009 41060067 -241133597 + (TA)n Simple_repeat Simple_repeat 2 59 0 2164 124 3 3 chr1 41060067 41060373 -241133291 - AluSx SINE Alu -6 306 1 1347 155 30 4 chr1 41060380 41060645 -241133019 - L1MD3 LINE L1 0 7995 7724 2693 197 57 35 chr1 41060665 41061284 -241132380 + Charlie7 DNA MER1_type 1713 2356 -256 2044 137 0 17 chr1 41061284 41061609 -241132055 - AluSq SINE Alu 0 313 1 2693 197 57 35 chr1 41061609 41061797 -241131867 + Charlie7 DNA MER1_type 2356 2538 -74 1085 240 90 56 chr1 41062389 41062834 -241130830 + MLT1C LTR MaLR 4 463 -4 478 224 24 0 chr1 41063317 41063442 -241130222 - LTR16C LTR ERVL 0 491 364 391 182 0 30 chr1 41063460 41063559 -241130105 + G-rich Low_complexity Low_complexity 5 100 0 396 269 0 0 chr1 41063650 41063825 -241129839 + GA-rich Low_complexity Low_complexity 4 178 0 332 260 0 6 chr1 41063792 41063961 -241129703 + G-rich Low_complexity Low_complexity 4 171 0 * 269 266 0 7 chr1 41063990 41064129 -241129535 + G-rich Low_complexity Low_complexity 40 177 0 222 229 0 0 chr1 41064129 41064177 -241129487 + GA-rich Low_complexity Low_complexity 5 52 0 804 242 50 47 chr1 41064181 41064458 -241129206 - LTR16C LTR ERVL -89 402 125 323 214 0 0 chr1 41064750 41064817 -241128847 - MIR SINE MIR -61 147 104 196 320 0 13 chr1 41064994 41065072 -241128592 - MIR SINE MIR -105 157 81 704 213 55 6 chr1 41065396 41065560 -241128104 + MIR SINE MIR 16 187 -75 347 323 86 37 chr1 41066035 41066490 -241127174 + L2 LINE L2 2028 2504 -810 259 369 46 15 chr1 41066517 41066712 -241126952 + L2 LINE L2 2650 2850 -464 413 260 34 111 chr1 41067583 41067818 -241125846 - L2 LINE L2 -69 3203 2987 306 335 6 22 chr1 41068556 41068735 -241124929 + GA-rich Low_complexity Low_complexity 1 176 0 338 260 0 6 chr1 41069005 41069182 -241124482 + (CA)n Simple_repeat Simple_repeat 1 176 0 203 266 53 35 chr1 41069442 41069555 -241124109 - MIR SINE MIR -77 131 17 370 281 94 0 chr1 41070107 41070235 -241123429 - MIR SINE MIR -20 242 103 503 301 171 0 chr1 41070485 41070684 -241122980 + MIR SINE MIR 27 259 -3 861 274 48 20 chr1 41071132 41071380 -241122284 - MIR SINE MIR -2 260 6 245 275 43 0 chr1 41072071 41072140 -241121524 + MIR SINE MIR 87 158 -104 2450 81 7 0 chr1 41072205 41072512 -241121152 + AluY SINE Alu 1 309 -2 788 283 74 52 chr1 41072706 41073112 -241120552 + MLT1L LTR MaLR 201 615 0 180 222 0 0 chr1 41073793 41073829 -241119835 - L2 LINE L2 -1 3312 3277 623 345 12 4 chr1 41073839 41074088 -241119576 + MIR SINE MIR 11 261 -1 513 296 124 45 chr1 41074813 41075144 -241118520 + L2 LINE L2 2916 3272 0 1061 94 11 11 chr1 41075407 41075587 -241118077 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 815 139 6 18 chr1 41075587 41075752 -241117912 + CT-rich Low_complexity Low_complexity 3 165 0 302 78 0 20 chr1 41075755 41075806 -241117858 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 291 267 0 13 chr1 41076154 41076229 -241117435 + L2 LINE L2 2986 3059 -213 1168 304 185 5 chr1 41076600 41077228 -241116436 + L2 LINE L2 1920 2660 -654 500 282 28 7 chr1 41077266 41077408 -241116256 + MIR SINE MIR 20 164 -98 449 309 152 14 chr1 41077556 41077766 -241115898 - MIR SINE MIR -5 257 19 247 167 24 0 chr1 41077778 41077820 -241115844 - 5S rRNA rRNA -76 45 3 2168 183 26 2 chr1 41078025 41078441 -241115223 - MSTB LTR MaLR 0 426 1 265 248 217 0 chr1 41079254 41079383 -241114281 - MLT1K LTR MaLR -20 568 412 2345 77 20 0 chr1 41079837 41080135 -241113529 - AluSx SINE Alu -8 304 1 387 277 23 31 chr1 41080736 41080866 -241112798 - MIR3 SINE MIR -65 143 15 261 354 64 21 chr1 41081134 41081414 -241112250 + L2 LINE L2 2245 2536 -778 431 223 97 0 chr1 41083654 41083757 -241109907 - MER81 DNA DNA 0 114 2 377 283 26 9 chr1 41083935 41084048 -241109616 - MIR SINE MIR -14 248 134 327 186 43 0 chr1 41084063 41084133 -241109531 - MIR SINE MIR -56 206 134 285 200 46 0 chr1 41084148 41084213 -241109451 - MIR SINE MIR -56 206 139 305 253 84 0 chr1 41084231 41084314 -241109350 - MIR SINE MIR -54 208 119 353 243 37 37 chr1 41084318 41084425 -241109239 - MIR SINE MIR -56 206 100 266 256 26 0 chr1 41085344 41085422 -241108242 + MIR SINE MIR 66 145 -63 304 346 58 6 chr1 41085815 41085971 -241107693 - MIR3 SINE MIR -9 199 36 213 39 0 0 chr1 41087124 41087150 -241106514 + (TC)n Simple_repeat Simple_repeat 2 27 0 263 195 36 63 chr1 41087300 41087423 -241106241 - MIR SINE MIR -44 218 104 194 188 0 21 chr1 41088747 41088795 -241104869 + CT-rich Low_complexity Low_complexity 3 49 0 737 226 133 10 chr1 41089076 41089271 -241104393 + MIR SINE MIR 23 241 -21 836 297 9 0 chr1 41089503 41089725 -241103939 - MIR SINE MIR -35 227 4 5234 159 13 16 chr1 41089898 41090164 -241103500 + L1MB7 LINE L1 4626 4891 -1293 2413 87 3 0 chr1 41090164 41090462 -241103202 - AluSp SINE Alu -14 299 1 5234 159 13 16 chr1 41090462 41091711 -241101953 + L1MB7 LINE L1 4891 6137 -47 1625 128 28 24 chr1 41091719 41091968 -241101696 + AluJo SINE Alu 30 279 -33 272 152 0 0 chr1 41091983 41092040 -241101624 + L1MB5 LINE L1 6126 6174 0 219 298 188 14 chr1 41092071 41092296 -241101368 + L2 LINE L2 2715 2977 -336 450 271 72 12 chr1 41092687 41092853 -241100811 - MER5B DNA MER1_type 0 178 3 206 231 115 64 chr1 41092948 41093026 -241100638 - L2 LINE L2 -18 3254 3173 406 227 70 24 chr1 41093796 41093953 -241099711 + MIR SINE MIR 36 204 -41 11470 91 19 7 chr1 41093953 41095604 -241098060 - Tigger1 DNA MER2_type 0 2418 748 1200 156 5 0 chr1 41095600 41095799 -241097865 - Tigger1 DNA MER2_type -2049 369 170 * 475 166 223 36 chr1 41095868 41096007 -241097657 + MIR SINE MIR 98 262 0 240 238 105 38 chr1 41096063 41096168 -241097496 + L2 LINE L2 3143 3254 -18 296 365 34 7 chr1 41096171 41096319 -241097345 - MIR SINE MIR -75 187 36 2177 191 38 109 chr1 41096548 41097206 -241096458 - L1ME1 LINE L1 -100 6066 5456 387 343 174 0 chr1 41099312 41099513 -241094151 - MIR SINE MIR -15 247 12 203 184 0 0 chr1 41100330 41100368 -241093296 + CT-rich Low_complexity Low_complexity 1 38 0 559 321 99 25 chr1 41100391 41100952 -241092712 - L2 LINE L2 -13 3300 2684 1170 70 0 0 chr1 41101808 41101950 -241091714 - AluY SINE Alu -8 303 162 390 301 168 16 chr1 41102682 41102938 -241090726 + MER102b DNA MER1_type 47 341 0 315 232 0 14 chr1 41102976 41103045 -241090619 - MIR SINE MIR -111 151 84 517 304 37 61 chr1 41103050 41103123 -241090541 + MLT1J LTR MaLR 3 76 -435 564 209 8 16 chr1 41103123 41103252 -241090412 - FLAM_A SINE Alu -5 128 1 517 304 37 61 chr1 41103252 41103335 -241090329 + MLT1J LTR MaLR 76 159 -352 2173 129 0 3 chr1 41103335 41103629 -241090035 + AluSx SINE Alu 1 293 -19 517 304 37 61 chr1 41103629 41103837 -241089827 + MLT1J LTR MaLR 159 401 -110 242 304 76 11 chr1 41103874 41103966 -241089698 - MIR SINE MIR -152 110 13 2266 122 0 0 chr1 41104445 41104748 -241088916 + AluSg SINE Alu 1 303 -7 1155 141 69 12 chr1 41105058 41105428 -241088236 + MLT2A2 LTR ERVL 149 453 0 189 306 53 47 chr1 41105444 41105614 -241088050 + L2 LINE L2 1932 2102 -1212 238 244 0 0 chr1 41105619 41105664 -241088000 + polypyrimidine Low_complexity Low_complexity 3 47 0 911 292 49 19 chr1 41105747 41106158 -241087506 - LTR16A LTR ERVL -6 444 22 212 281 47 0 chr1 41106357 41106421 -241087243 - L2 LINE L2 0 3313 3247 838 204 26 31 chr1 41108153 41108379 -241085285 + LTR33 LTR ERVL 2 226 -295 522 324 121 33 chr1 41109052 41109416 -241084248 - L3 LINE CR1 -2 1575 1180 409 219 116 0 chr1 41109629 41109764 -241083900 + MIR SINE MIR 34 187 -69 219 326 29 58 chr1 41110050 41110188 -241083476 + MIR SINE MIR 64 197 -65 248 269 137 56 chr1 41110393 41110482 -241083182 - L3 LINE CR1 -11 1566 1486 1741 157 56 17 chr1 41110482 41110769 -241082895 - AluJo SINE Alu -14 298 1 248 269 137 56 chr1 41110769 41110928 -241082736 - L3 LINE CR1 -91 1486 1298 1116 329 122 37 chr1 41111193 41112312 -241081352 + L2 LINE L2 1447 2660 -654 255 172 0 35 chr1 41112485 41112543 -241081121 + (TG)n Simple_repeat Simple_repeat 1 56 0 2402 107 0 10 chr1 41112576 41112884 -241080780 + AluSq SINE Alu 1 305 -8 292 283 94 38 chr1 41113522 41113681 -241079983 - L2 LINE L2 -2 3270 3103 1003 219 86 9 chr1 41113796 41114029 -241079635 + MIR SINE MIR 12 262 0 338 259 54 18 chr1 41114574 41114686 -241078978 - LTR33A LTR ERVL 0 523 408 301 235 59 39 chr1 41115093 41115195 -241078469 - MIR SINE MIR -56 152 49 244 211 18 0 chr1 41115646 41115703 -241077961 - LTR67 LTR ERVL -12 545 488 456 51 0 0 chr1 41116716 41116775 -241076889 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 3523 175 31 15 chr1 41117716 41118397 -241075267 - L1MB5 LINE L1 0 6174 5483 1213 135 6 0 chr1 41118417 41118595 -241075069 - AluSg/x SINE Alu -18 294 116 587 320 11 11 chr1 41118623 41118804 -241074860 - MIR SINE MIR -74 188 8 353 285 91 0 chr1 41118866 41118993 -241074671 + MIR SINE MIR 71 211 -51 273 309 32 8 chr1 41119235 41119358 -241074306 - L1ME4a LINE L1 -3 6118 5993 277 292 130 26 chr1 41119561 41119715 -241073949 + MIR SINE MIR 36 205 -57 243 0 0 0 chr1 41119887 41119914 -241073750 + (TG)n Simple_repeat Simple_repeat 2 28 0 1350 273 24 54 chr1 41121364 41122027 -241071637 - L1ME4a LINE L1 -208 5913 5271 2086 108 34 7 chr1 41122131 41122428 -241071236 - AluSc SINE Alu 0 309 5 4206 103 39 15 chr1 41122891 41123403 -241070261 + L1PB2 LINE L1 5465 5998 -153 2181 115 0 14 chr1 41123403 41123698 -241069966 + AluSx SINE Alu 1 291 -21 4206 103 39 15 chr1 41123698 41123856 -241069808 + L1PB2 LINE L1 5998 6151 0 429 237 11 0 chr1 41124113 41124206 -241069458 + L2 LINE L2 3220 3313 0 584 328 132 14 chr1 41124232 41124589 -241069075 + L1MC/D LINE L1 4875 5273 -873 458 324 108 17 chr1 41124597 41125060 -241068604 + L1MC/D LINE L1 5285 5789 -2019 1753 213 75 19 chr1 41125062 41125409 -241068255 - Charlie4a DNA MER1_type -1454 507 126 2246 176 112 4 chr1 41125409 41125864 -241067800 - MLT1D LTR MaLR 0 505 2 1753 213 75 19 chr1 41125864 41125985 -241067679 - Charlie4a DNA MER1_type -1835 126 13 361 284 9 9 chr1 41125991 41126107 -241067557 - L1ME LINE L1 -528 5593 5478 253 214 36 0 chr1 41126107 41126163 -241067501 + GA-rich Low_complexity Low_complexity 3 60 0 2292 110 3 0 chr1 41126233 41126534 -241067130 - AluSg SINE Alu -5 305 4 989 224 22 22 chr1 41126597 41126820 -241066844 - MER58A DNA MER1_type 0 224 2 1435 171 55 7 chr1 41126829 41127138 -241066526 - MER33 DNA MER1_type 0 324 1 405 358 50 39 chr1 41127169 41127448 -241066216 - HAL1b LINE L1 -969 379 98 298 271 43 58 chr1 41127880 41128087 -241065577 - MLT1H LTR MaLR -237 312 109 2145 116 7 0 chr1 41128131 41128424 -241065240 + AluY SINE Alu 1 295 -16 945 247 31 9 chr1 41128437 41128776 -241064888 + L1ME1 LINE L1 5427 5969 -197 264 310 23 23 chr1 41130364 41130493 -241063171 - L1ME LINE L1 -417 5704 5576 639 283 92 33 chr1 41130636 41130940 -241062724 - MLT1K LTR MaLR -159 429 108 228 308 0 15 chr1 41131839 41131908 -241061756 + C-rich Low_complexity Low_complexity 1 67 0 304 340 32 19 chr1 41132438 41132594 -241061070 - MIR SINE MIR -17 245 88 437 256 0 73 chr1 41132681 41132872 -241060792 + G-rich Low_complexity Low_complexity 1 177 0 366 304 128 7 chr1 41133338 41133486 -241060178 + MIR SINE MIR 76 241 -21 1051 240 66 48 chr1 41133554 41133664 -241060000 - LTR16A LTR ERVL -96 354 247 585 229 9 0 chr1 41133664 41133773 -241059891 + MER81 DNA DNA 5 114 0 1051 240 66 48 chr1 41133773 41133995 -241059669 - LTR16A LTR ERVL -203 247 16 981 233 52 4 chr1 41134397 41134629 -241059035 - MIR SINE MIR 0 262 20 330 266 266 0 chr1 41134774 41134902 -241058762 - MIR SINE MIR -28 234 73 1634 256 42 40 chr1 41134904 41134972 -241058692 - MLT1H1 LTR MaLR 0 555 489 6455 30 3 0 chr1 41134972 41135717 -241057947 + L1PA4 LINE L1 5409 6155 0 1634 256 42 40 chr1 41135717 41136202 -241057462 - MLT1H1 LTR MaLR -66 489 1 197 318 182 0 chr1 41136675 41136823 -241056841 + L2 LINE L2 2711 2885 -429 405 144 33 0 chr1 41136914 41137004 -241056660 + GA-rich Low_complexity Low_complexity 2 94 0 364 222 72 26 chr1 41137006 41137159 -241056505 + MLT1K LTR MaLR 412 571 -17 277 196 18 0 chr1 41137276 41137332 -241056332 - MIR SINE MIR -55 153 97 502 251 29 18 chr1 41137715 41137886 -241055778 + L2 LINE L2 2861 3033 -239 2233 106 0 3 chr1 41137890 41138182 -241055482 - AluSg SINE Alu -19 291 1 341 194 111 0 chr1 41138211 41138283 -241055381 - L2 LINE L2 -6 3307 3228 486 212 0 0 chr1 41138330 41138495 -241055169 + (CA)n Simple_repeat Simple_repeat 2 166 0 612 186 0 0 chr1 41138541 41138718 -241054946 + (CA)n Simple_repeat Simple_repeat 2 178 0 434 210 0 6 chr1 41138738 41138919 -241054745 + (CA)n Simple_repeat Simple_repeat 1 180 0 349 300 86 36 chr1 41138949 41139089 -241054575 - L2 LINE L2 -221 3092 2946 2901 99 67 2 chr1 41139251 41139686 -241053978 - L1PA11 LINE L1 0 6174 5712 3039 72 16 11 chr1 41139686 41140128 -241053536 + L1PA11 LINE L1 5268 5711 -463 1055 308 133 6 chr1 41140135 41140677 -241052987 - L2 LINE L2 -575 2739 2129 599 276 23 6 chr1 41140766 41140940 -241052724 - MLT1A1 LTR MaLR -8 459 283 510 284 113 49 chr1 41141631 41141958 -241051706 - L2 LINE L2 0 3313 2966 228 67 0 0 chr1 41142479 41142509 -241051155 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 619 284 50 20 chr1 41142660 41142861 -241050803 + MER63A DNA MER1_type 3 209 -1 906 284 8 24 chr1 41142962 41143212 -241050452 + MIR SINE MIR 2 247 -15 653 226 51 0 chr1 41143268 41143445 -241050219 + L1M4 LINE L1 2375 2560 -3586 3883 29 0 0 chr1 41143472 41143920 -241049744 - L1PA3 LINE L1 0 6155 5708 513 250 0 0 chr1 41145520 41145692 -241047972 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 316 287 111 0 chr1 41145797 41145905 -241047759 + MIR SINE MIR 2 121 -141 1522 248 73 17 chr1 41146182 41146649 -241047015 + L2 LINE L2 2821 3313 0 453 263 117 0 chr1 41147160 41147297 -241046367 + L2 LINE L2 2926 3078 -235 487 287 30 30 chr1 41147374 41147541 -241046123 - MIR SINE MIR -76 186 20 1469 186 31 9 chr1 41148487 41148568 -241045096 - MER33 DNA MER1_type -2261 324 246 2485 92 0 0 chr1 41148568 41148873 -241044791 + AluSq SINE Alu 1 305 -8 1469 186 31 9 chr1 41148873 41149108 -241044556 - MER33 DNA MER1_type -2339 246 1 896 233 92 12 chr1 41149201 41149441 -241044223 + MLT1I LTR MaLR 14 272 -137 765 190 76 25 chr1 41149468 41149696 -241043968 - MLT1A1 LTR MaLR -131 243 1 186 205 26 0 chr1 41151056 41151083 -241042581 + MIR SINE MIR 66 93 -169 490 270 41 40 chr1 41151083 41151234 -241042430 + MIR SINE MIR 3 152 -61 525 282 43 21 chr1 41152376 41152596 -241041068 - MIR SINE MIR -4 258 32 227 241 19 0 chr1 41154176 41154230 -241039434 + MER63 DNA MER1_type 1 681 -381 2250 121 0 6 chr1 41154237 41154551 -241039113 + AluSx SINE Alu 1 312 0 1501 172 54 34 chr1 41154572 41154926 -241038738 + MER63 DNA MER1_type 674 1034 -28 299 316 105 0 chr1 41154962 41155076 -241038588 + L2 LINE L2 3188 3313 0 265 77 58 19 chr1 41155210 41155262 -241038402 + GA-rich Low_complexity Low_complexity 3 56 0 351 266 0 0 chr1 41155298 41155377 -241038287 + MLT1I LTR MaLR 370 448 -57 429 116 0 14 chr1 41155415 41155484 -241038180 + MLT1D LTR MaLR 438 505 0 2720 99 27 10 chr1 41155928 41156340 -241037324 - L1PA14 LINE L1 0 6161 5743 875 78 0 63 chr1 41156563 41156705 -241036959 - L1PA14 LINE L1 -409 5752 5620 753 246 85 34 chr1 41156888 41157124 -241036540 - MIR SINE MIR 0 262 15 299 210 16 0 chr1 41157151 41157213 -241036451 + MIR SINE MIR 117 179 -83 603 257 77 5 chr1 41158002 41158211 -241035453 + MIR SINE MIR 25 247 -15 257 327 87 13 chr1 41158614 41158764 -241034900 - MIR3 SINE MIR -9 199 39 407 232 94 66 chr1 41159357 41159747 -241033917 - LTR16A1 LTR ERVL -9 448 17 367 263 131 6 chr1 41159909 41160017 -241033647 - MIR SINE MIR -86 122 23 573 305 126 20 chr1 41160745 41161135 -241032529 + MLT1J2 LTR MaLR 20 450 0 664 269 6 0 chr1 41161140 41161300 -241032364 - MIR SINE MIR -12 250 90 226 143 0 71 chr1 41161304 41161346 -241032318 - L1M1 LINE L1 -5981 1584 1546 326 285 65 47 chr1 41162137 41162314 -241031350 + MIR SINE MIR 12 190 -72 275 241 269 19 chr1 41163136 41163244 -241030420 - MIR SINE MIR -55 153 19 338 299 136 16 chr1 41163311 41163495 -241030169 - MIR SINE MIR -12 250 45 396 376 45 5 chr1 41164486 41164688 -241028976 + MIR SINE MIR 36 245 -17 21 0 0 0 chr1 41164712 41164733 -241028931 + AT_rich Low_complexity Low_complexity 1 21 0 833 153 0 0 chr1 41164733 41164857 -241028807 - AluJb SINE Alu -188 124 1 504 218 35 75 chr1 41165641 41165751 -241027913 + MIR SINE MIR 35 137 -125 1383 287 117 2 chr1 41165751 41166187 -241027477 + LTR16C LTR ERVL 3 488 -3 504 218 35 75 chr1 41166187 41166250 -241027414 + MIR SINE MIR 137 201 -61 224 252 118 72 chr1 41166921 41167108 -241026556 - MIR3 SINE MIR -59 203 9 946 154 6 0 chr1 41168161 41168317 -241025347 + FRAM SINE Alu 1 154 -22 203 255 0 0 chr1 41168337 41168388 -241025276 - MIR SINE MIR -193 69 19 228 143 0 0 chr1 41169047 41169089 -241024575 + (GA)n Simple_repeat Simple_repeat 1 42 0 630 314 39 13 chr1 41169588 41169817 -241023847 - MIR SINE MIR -3 259 25 1314 105 2 4 chr1 41169818 41170621 -241023043 + (TGGA)n Simple_repeat Simple_repeat 1 844 -184 234 116 0 0 chr1 41170621 41170664 -241023000 + (TATG)n Simple_repeat Simple_repeat 1 43 0 1314 105 2 4 chr1 41170664 41170670 -241022994 + (TGGA)n Simple_repeat Simple_repeat 844 1028 0 1296 84 0 0 chr1 41170670 41170849 -241022815 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1494 53 0 0 chr1 41171002 41171265 -241022399 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 227 258 0 15 chr1 41171617 41171683 -241021981 + MLT1K LTR MaLR 186 250 -338 235 303 13 0 chr1 41171806 41171882 -241021782 + MIR SINE MIR 186 262 0 229 104 0 42 chr1 41174509 41174557 -241019107 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 146 0 21 chr1 41175691 41175739 -241017925 + (CA)n Simple_repeat Simple_repeat 1 47 0 226 262 33 0 chr1 41176846 41176907 -241016757 + (CATG)n Simple_repeat Simple_repeat 4 66 0 209 195 0 0 chr1 41177117 41177158 -241016506 + (CA)n Simple_repeat Simple_repeat 1 41 0 1086 271 118 30 chr1 41180157 41180625 -241013039 - L2 LINE L2 -1 3312 2804 2130 108 13 0 chr1 41180662 41180967 -241012697 - AluSc SINE Alu 0 309 1 586 291 25 80 chr1 41181025 41181352 -241012312 - L1ME LINE L1 -334 5787 5479 526 286 28 28 chr1 41181506 41181684 -241011980 + MER5B DNA MER1_type 1 178 0 364 178 0 84 chr1 41181759 41181866 -241011798 - L1MC5 LINE L1 -30 7931 7834 622 296 65 0 chr1 41181866 41182113 -241011551 - L2 LINE L2 -567 2747 2485 2408 77 3 0 chr1 41182895 41183205 -241010459 + AluSp SINE Alu 3 313 0 183 310 103 11 chr1 41183704 41183791 -241009873 - MIR SINE MIR -72 136 42 1017 260 29 0 chr1 41183858 41184104 -241009560 - MIR SINE MIR -8 254 2 1835 252 117 19 chr1 41185510 41186050 -241007614 + MLT1E LTR MaLR 1 593 0 620 138 9 0 chr1 41186365 41186481 -241007183 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 374 212 10 0 chr1 41186567 41186666 -241006998 + (TCCA)n Simple_repeat Simple_repeat 2 101 0 205 241 0 35 chr1 41186676 41186734 -241006930 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 619 283 83 5 chr1 41188209 41188414 -241005250 + MIR SINE MIR 30 250 -12 225 207 17 35 chr1 41188437 41188495 -241005169 + MIR SINE MIR 97 153 -109 277 247 47 0 chr1 41188526 41188611 -241005053 - MER102a DNA MER1_type -1 329 241 339 319 0 9 chr1 41188753 41188866 -241004798 - MIR SINE MIR 0 262 151 414 340 45 15 chr1 41189011 41189211 -241004453 - MIR SINE MIR -25 237 32 217 177 65 16 chr1 41190197 41190259 -241003405 - L2 LINE L2 -4 3309 3245 1113 251 0 15 chr1 41190337 41190596 -241003068 + MIR SINE MIR 8 262 0 204 270 44 66 chr1 41190721 41190858 -241002806 + MIR3 SINE MIR 6 139 -69 333 309 7 27 chr1 41191636 41191785 -241001879 + (CA)n Simple_repeat Simple_repeat 1 146 0 205 185 31 0 chr1 41191794 41191859 -241001805 + (CATA)n Simple_repeat Simple_repeat 2 68 0 235 355 0 0 chr1 41191876 41191983 -241001681 + (CA)n Simple_repeat Simple_repeat 2 108 0 293 367 0 17 chr1 41192084 41192264 -241001400 + (CA)n Simple_repeat Simple_repeat 2 178 0 979 177 10 56 chr1 41192857 41192989 -241000675 + MER5A DNA MER1_type 1 123 -66 2069 101 30 0 chr1 41192989 41193287 -241000377 - AluSg SINE Alu -3 307 1 979 177 10 56 chr1 41193287 41193352 -241000312 + MER5A DNA MER1_type 123 189 0 512 296 96 6 chr1 41193356 41193564 -241000100 + MIR SINE MIR 23 245 -17 1110 153 11 16 chr1 41194633 41194822 -240998842 + MER5A DNA MER1_type 1 188 -1 325 289 31 0 chr1 41194910 41195007 -240998657 + MIR SINE MIR 23 122 -86 226 315 45 11 chr1 41195847 41195936 -240997728 + L2 LINE L2 3206 3297 -16 216 294 132 48 chr1 41196375 41196603 -240997061 + L2 LINE L2 2419 2665 -649 609 324 54 22 chr1 41197277 41197648 -240996016 + L1MC4a LINE L1 5569 5951 -1857 897 264 41 41 chr1 41200369 41200430 -240993234 + MER102b DNA MER1_type 27 87 -1341 2523 55 3 3 chr1 41200430 41200740 -240992924 + AluY SINE Alu 1 310 -1 897 264 41 41 chr1 41200740 41200993 -240992671 + MER102b DNA MER1_type 86 341 0 492 239 46 0 chr1 41201416 41201546 -240992118 + MIR SINE MIR 46 181 -81 313 325 208 0 chr1 41202420 41202574 -240991090 + MIR SINE MIR 69 254 -8 221 333 128 0 chr1 41203538 41203640 -240990024 - L2 LINE L2 -17 3255 3141 1900 155 3 19 chr1 41203960 41204277 -240989387 + AluJb SINE Alu 1 312 0 411 317 0 0 chr1 41205099 41205200 -240988464 - L2 LINE L2 -38 3234 3134 203 246 49 0 chr1 41205672 41205733 -240987931 - L2 LINE L2 -63 3209 3146 285 341 0 0 chr1 41205744 41205829 -240987835 + L3 LINE CR1 1490 1574 -3 340 262 84 89 chr1 41205867 41205909 -240987755 - MARNA DNA Mariner -55 531 490 1746 162 87 6 chr1 41205909 41206230 -240987434 + MER7A DNA MER2_type 1 345 -1 340 262 84 89 chr1 41206230 41206389 -240987275 - MARNA DNA Mariner -96 490 331 247 139 0 174 chr1 41206885 41206971 -240986693 - MIR3 SINE MIR 0 208 138 286 351 89 12 chr1 41207737 41207905 -240985759 - MIR SINE MIR -78 184 4 1681 199 36 36 chr1 41207913 41208101 -240985563 + MLT1C LTR MaLR 1 188 -279 2330 102 0 3 chr1 41208101 41208414 -240985250 + AluSx SINE Alu 1 312 0 1681 199 36 36 chr1 41208414 41208616 -240985048 + MLT1C LTR MaLR 187 391 -76 414 316 102 36 chr1 41209131 41209198 -240984466 + L2 LINE L2 2749 2810 -503 1119 211 0 28 chr1 41209198 41209411 -240984253 + MER3 DNA MER1_type 1 207 -2 414 316 102 36 chr1 41209411 41209871 -240983793 + L2 LINE L2 2810 3313 0 417 302 8 8 chr1 41210582 41210711 -240982953 + L2 LINE L2 3183 3311 -2 428 231 104 66 chr1 41211619 41211801 -240981863 + L2 LINE L2 3125 3313 0 248 345 88 25 chr1 41212483 41212721 -240980943 + L2 LINE L2 2988 3240 -32 581 333 28 5 chr1 41215680 41215893 -240977771 - MIR SINE MIR -16 246 29 250 288 18 54 chr1 41216966 41217077 -240976587 - MIR SINE MIR -66 196 90 21 0 0 0 chr1 41217111 41217132 -240976532 + AT_rich Low_complexity Low_complexity 1 21 0 758 178 94 28 chr1 41217161 41217341 -240976323 - MIR SINE MIR -58 204 13 488 230 9 9 chr1 41217698 41217811 -240975853 + MIR SINE MIR 102 214 -48 225 258 113 52 chr1 41217899 41217996 -240975668 - MIR SINE MIR -24 238 136 1478 157 0 61 chr1 41217996 41218276 -240975388 + AluJo SINE Alu 1 263 -49 363 321 104 0 chr1 41218299 41218433 -240975231 - MIR SINE MIR -112 150 3 480 230 45 7 chr1 41218500 41218639 -240975025 - MIR SINE MIR -56 152 36 210 302 105 12 chr1 41219748 41219834 -240973830 - MIR SINE MIR -166 96 3 1079 126 11 6 chr1 41219845 41220020 -240973644 + MER5A DNA MER1_type 9 184 -5 394 293 24 36 chr1 41219871 41220038 -240973626 - MER5A DNA MER1_type -23 166 2 * 430 300 65 12 chr1 41220290 41220460 -240973204 - MIR SINE MIR -63 199 21 280 264 120 48 chr1 41220585 41220752 -240972912 - L2 LINE L2 -539 2775 2597 557 302 40 23 chr1 41220906 41221143 -240972521 - MIR SINE MIR -17 245 3 233 309 338 0 chr1 41221966 41222105 -240971559 - MER91A DNA MER1_type -10 186 1 589 193 21 14 chr1 41222186 41222326 -240971338 + MIR SINE MIR 122 262 0 507 295 82 38 chr1 41225205 41225388 -240968276 - MIR SINE MIR -69 193 3 392 341 105 54 chr1 41225781 41226450 -240967214 - L1M4 LINE L1 -1208 1299 801 183 167 0 0 chr1 41228084 41228126 -240965538 + (CAT)n Simple_repeat Simple_repeat 3 44 0 583 262 64 16 chr1 41229316 41229503 -240964161 + MER117 DNA MER1_type 1 196 -1 247 303 0 0 chr1 41229589 41229655 -240964009 + L3 LINE CR1 1416 1481 -96 418 291 242 28 chr1 41230624 41230950 -240962714 - L3 LINE CR1 -11 1566 1171 679 284 108 0 chr1 41231775 41231997 -240961667 + MIR SINE MIR 14 259 -3 787 254 73 5 chr1 41232096 41232301 -240961363 + MER58A DNA MER1_type 1 219 -5 292 298 30 38 chr1 41232378 41232556 -240961108 - MIR SINE MIR -63 145 15 383 278 0 0 chr1 41233407 41233497 -240960167 - MIR SINE MIR -65 197 108 744 280 40 13 chr1 41234525 41234750 -240958914 - MIR SINE MIR -1 261 31 375 249 144 52 chr1 41235095 41235268 -240958396 - MIR SINE MIR -73 189 1 215 323 89 8 chr1 41235441 41235565 -240958099 + L2 LINE L2 3180 3313 0 420 313 121 7 chr1 41235754 41235959 -240957705 - MIR SINE MIR -8 254 28 195 162 0 27 chr1 41235938 41235975 -240957689 + MIR SINE MIR 117 152 -110 * 481 264 28 7 chr1 41236244 41236388 -240957276 - MIR SINE MIR -43 219 73 292 242 197 7 chr1 41236477 41236624 -240957040 - MIR3 SINE MIR -63 145 15 232 288 110 34 chr1 41237197 41237315 -240956349 + L2 LINE L2 3125 3251 -21 255 224 0 17 chr1 41237325 41237383 -240956281 + GA-rich Low_complexity Low_complexity 1 57 0 1549 265 30 16 chr1 41238404 41238841 -240954823 + LTR37B LTR ERV1 21 463 -5 449 299 28 28 chr1 41239520 41239704 -240953960 - MIR SINE MIR -39 223 41 943 237 0 62 chr1 41239704 41239928 -240953736 - MER63A DNA MER1_type 0 210 1 449 299 28 28 chr1 41239928 41239956 -240953708 - MIR SINE MIR -220 42 15 449 236 54 25 chr1 41240287 41240433 -240953231 + MIR SINE MIR 105 252 -10 658 298 46 29 chr1 41240571 41240809 -240952855 - MIR SINE MIR -11 251 10 244 365 27 40 chr1 41240872 41241020 -240952644 + L2 LINE L2 2664 2809 -505 303 267 28 139 chr1 41241213 41241393 -240952271 + L2 LINE L2 3004 3163 -109 304 121 35 0 chr1 41241546 41241604 -240952060 + MADE1 DNA Mariner 2 61 -19 23 0 0 0 chr1 41242413 41242436 -240951228 + AT_rich Low_complexity Low_complexity 1 23 0 1612 167 13 23 chr1 41243448 41243754 -240949910 - AluJo SINE Alu -9 303 1 279 318 135 47 chr1 41243921 41244113 -240949551 + MIR SINE MIR 8 216 -46 761 215 105 40 chr1 41244133 41244361 -240949303 - MIR SINE MIR -14 248 6 216 135 0 0 chr1 41244410 41244447 -240949217 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 303 274 63 11 chr1 41244447 41244542 -240949122 - L2 LINE L2 0 3272 3173 270 316 94 17 chr1 41244564 41244681 -240948983 + L2 LINE L2 3147 3272 0 283 284 108 0 chr1 41244894 41244996 -240948668 - MER20B DNA MER1_type -575 208 96 723 253 96 0 chr1 41246072 41246250 -240947414 + MER63A DNA MER1_type 13 207 -3 348 353 22 0 chr1 41246261 41246397 -240947267 + L2 LINE L2 2921 3059 -213 670 279 150 0 chr1 41246920 41247146 -240946518 - MIR SINE MIR -1 261 2 294 284 18 46 chr1 41247549 41247658 -240946006 - MER5A DNA MER1_type 0 189 84 211 220 92 73 chr1 41247581 41247690 -240945974 + MER5A DNA MER1_type 44 154 -35 * 365 308 8 0 chr1 41248094 41248214 -240945450 - MER103 DNA DNA -10 156 36 393 284 110 7 chr1 41248261 41248416 -240945248 + MIR SINE MIR 32 202 -60 216 320 128 0 chr1 41248668 41248793 -240944871 - MIR SINE MIR -72 190 50 419 274 89 0 chr1 41249540 41249675 -240943989 - MIR SINE MIR -78 184 38 189 333 49 0 chr1 41250577 41250658 -240943006 + L2 LINE L2 3004 3088 -225 199 279 0 33 chr1 41250743 41250804 -240942860 + L2 LINE L2 3240 3298 -15 383 310 44 18 chr1 41251228 41251341 -240942323 + MLT1K LTR MaLR 53 168 -420 343 252 0 84 chr1 41251542 41251673 -240941991 + MLT1K LTR MaLR 432 551 -37 261 291 67 73 chr1 41252618 41252797 -240940867 - MIR SINE MIR -50 212 35 225 146 73 0 chr1 41252914 41252955 -240940709 + MLT1L LTR MaLR 1 44 -571 1061 248 194 22 chr1 41252961 41253409 -240940255 + MLT1H LTR MaLR 12 536 -13 391 277 108 14 chr1 41253485 41253633 -240940031 + MLT1L LTR MaLR 122 283 -332 1422 203 69 3 chr1 41253668 41253959 -240939705 + AluJo SINE Alu 1 310 -2 515 226 95 0 chr1 41254074 41254211 -240939453 + MLT1L LTR MaLR 466 615 0 190 158 0 35 chr1 41254450 41254507 -240939157 + (AATTG)n Simple_repeat Simple_repeat 4 58 0 317 339 82 33 chr1 41254951 41255397 -240938267 + L2 LINE L2 2600 3060 -253 264 100 0 0 chr1 41255623 41255663 -240938001 + (CAATC)n Simple_repeat Simple_repeat 4 43 0 220 280 80 22 chr1 41256065 41256202 -240937462 - MIR3 SINE MIR -4 204 59 444 300 0 8 chr1 41256252 41256382 -240937282 + MIR SINE MIR 10 138 -124 1571 162 8 4 chr1 41256789 41257055 -240936609 + AluJo SINE Alu 6 272 -40 407 204 146 80 chr1 41257659 41257796 -240935868 - MIR SINE MIR -110 152 7 286 246 15 0 chr1 41258591 41258656 -240935008 + MIR SINE MIR 105 170 -92 1956 264 103 27 chr1 41258830 41259795 -240933869 + L2 LINE L2 2208 3256 -57 278 323 96 26 chr1 41260175 41260404 -240933260 + MLT1K LTR MaLR 185 429 -159 2674 238 58 8 chr1 41260688 41261344 -240932320 - MER115 DNA AcHobo 0 693 5 316 286 7 48 chr1 41262658 41262805 -240930859 + (ATGGTG)n Simple_repeat Simple_repeat 6 146 0 389 356 11 0 chr1 41262912 41263089 -240930575 + (TGG)n Simple_repeat Simple_repeat 1 179 0 395 217 38 120 chr1 41264219 41264403 -240929261 - L1ME3 LINE L1 -1 6165 5994 609 262 39 15 chr1 41264443 41264710 -240928954 - L1ME3 LINE L1 -237 5884 5530 854 259 40 15 chr1 41264712 41265036 -240928628 + L1ME3A LINE L1 4943 5274 -872 2086 112 7 3 chr1 41265051 41265345 -240928319 + AluSq SINE Alu 5 299 -14 276 53 0 0 chr1 41265365 41265403 -240928261 + (GA)n Simple_repeat Simple_repeat 1 38 0 1744 257 69 16 chr1 41265417 41266024 -240927640 + L1ME3A LINE L1 5434 6072 -98 339 278 111 32 chr1 41266144 41266270 -240927394 + L2 LINE L2 3177 3312 -1 224 208 104 0 chr1 41266311 41266388 -240927276 + L2 LINE L2 2965 3049 -223 337 283 91 59 chr1 41266752 41267048 -240926616 - L2 LINE L2 -194 3078 2776 1961 120 21 3 chr1 41267759 41268050 -240925614 + AluSx SINE Alu 1 296 -16 491 161 87 44 chr1 41268208 41268366 -240925298 - MIR SINE MIR -22 240 28 802 288 82 71 chr1 41268827 41269581 -240924083 + L1MB3 LINE L1 3606 4350 -1771 1855 128 0 14 chr1 41269581 41269890 -240923774 - AluSq SINE Alu 0 310 6 802 288 82 71 chr1 41269890 41269926 -240923738 + L1MB3 LINE L1 4350 4384 -1737 672 230 0 15 chr1 41269926 41270061 -240923603 + FLAM_C SINE Alu 1 133 0 802 288 82 71 chr1 41270061 41271280 -240922384 + L1MB3 LINE L1 4384 5654 -467 1672 201 69 23 chr1 41271574 41272008 -240921656 - L1MB8 LINE L1 -1 6177 5724 12766 148 82 17 chr1 41272018 41275048 -240918616 + L1MCa LINE L1 12 4750 -1676 6369 85 28 56 chr1 41275047 41276062 -240917602 + L1MA2 LINE L1 5319 6304 0 * 3749 165 39 31 chr1 41276080 41276885 -240916779 + L1MCa LINE L1 4741 5551 -875 2099 145 23 20 chr1 41276898 41277292 -240916372 + L1MB3 LINE L1 5787 6181 -2 9481 202 36 28 chr1 41277303 41277929 -240915735 + L1MC1 LINE L1 2290 2909 -3424 469 198 0 0 chr1 41277929 41278015 -240915649 - FLAM_A SINE Alu -56 86 1 9481 202 36 28 chr1 41278015 41280374 -240913290 + L1MC1 LINE L1 2909 5274 -1059 1990 121 10 0 chr1 41280374 41280664 -240913000 - AluSx SINE Alu -19 293 1 9481 202 36 28 chr1 41280664 41281732 -240911932 + L1MC1 LINE L1 5274 6332 -1 596 226 38 6 chr1 41281863 41282022 -240911642 + L1ME4a LINE L1 5954 6117 -4 302 313 77 19 chr1 41282058 41282266 -240911398 + L1ME4a LINE L1 5603 5822 -299 281 303 90 8 chr1 41282339 41282461 -240911203 + L1MC5 LINE L1 7796 7927 -34 570 266 67 47 chr1 41282590 41283081 -240910583 + L1ME4a LINE L1 4256 6121 0 572 217 132 29 chr1 41283099 41283371 -240910293 + L1ME4a LINE L1 5822 6121 0 418 261 122 32 chr1 41283828 41284025 -240909639 + MIR SINE MIR 52 260 -2 732 207 8 154 chr1 41284138 41284328 -240909336 - MER58A DNA MER1_type -2199 221 73 1278 183 10 24 chr1 41284328 41284623 -240909041 + L1MA4 LINE L1 6010 6300 0 732 207 8 154 chr1 41284623 41284678 -240908986 - MER58A DNA MER1_type -2347 73 12 998 235 34 97 chr1 41285417 41285829 -240907835 + LTR16A1 LTR ERVL 72 457 0 306 0 0 0 chr1 41286343 41286377 -240907287 + (TG)n Simple_repeat Simple_repeat 2 35 0 282 309 77 62 chr1 41286492 41286686 -240906978 - MIR SINE MIR 0 262 66 665 208 36 42 chr1 41286706 41286863 -240906801 - MER63A DNA MER1_type -1478 210 53 2175 114 0 7 chr1 41286863 41287169 -240906495 - AluSx SINE Alu -8 304 1 247 290 99 118 chr1 41288329 41288591 -240905073 - L2 LINE L2 0 3272 3016 616 237 14 0 chr1 41288865 41289004 -240904660 + MIR SINE MIR 70 210 -52 569 288 31 62 chr1 41289890 41290178 -240903486 + LTR16C LTR ERVL 211 489 -2 235 336 22 45 chr1 41290272 41290406 -240903258 + L2 LINE L2 3142 3272 0 483 214 99 15 chr1 41291915 41292046 -240901618 + MER103 DNA DNA 16 157 -9 259 214 171 14 chr1 41292665 41292735 -240900929 - L2 LINE L2 -1 3312 3232 394 269 19 87 chr1 41292782 41292990 -240900674 + L2 LINE L2 3120 3313 0 2169 119 76 18 chr1 41293098 41293441 -240900223 + THE1B LTR MaLR 2 364 0 11530 104 8 2 chr1 41293441 41295011 -240898653 + THE1B-int LTR MaLR 1 1578 -2 2131 119 102 15 chr1 41295013 41295348 -240898316 + THE1B LTR MaLR 1 364 0 361 213 11 21 chr1 41295787 41295881 -240897783 - MIR SINE MIR -44 218 126 383 283 57 44 chr1 41296038 41296197 -240897467 - MIR SINE MIR -19 243 83 258 32 0 0 chr1 41296434 41296465 -240897199 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 379 297 0 0 chr1 41296470 41296561 -240897103 - L2 LINE L2 -18 3295 3205 278 313 157 24 chr1 41296843 41296898 -240896766 - L2 LINE L2 -208 3064 3018 413 152 0 38 chr1 41296898 41297037 -240896627 - L1PA10 LINE L1 0 6168 6077 278 313 157 24 chr1 41297037 41297147 -240896517 - L2 LINE L2 -254 3018 2877 351 304 164 29 chr1 41297784 41297955 -240895709 + MIR SINE MIR 33 226 -36 287 200 59 24 chr1 41298729 41298814 -240894850 + MIR SINE MIR 2 89 -173 226 194 69 69 chr1 41298851 41298923 -240894741 + MIR SINE MIR 51 122 -140 193 359 33 11 chr1 41299053 41299145 -240894519 + MIR SINE MIR 164 257 -5 642 138 32 101 chr1 41299160 41299349 -240894315 + MER104 DNA MER2_type 1 176 -4 336 282 72 46 chr1 41301084 41301279 -240892385 + MIR3 SINE MIR 7 206 -2 200 299 11 0 chr1 41302413 41302500 -240891164 + (CA)n Simple_repeat Simple_repeat 2 89 0 257 317 6 72 chr1 41302507 41302674 -240890990 - MIR SINE MIR -1 261 106 241 348 0 13 chr1 41302707 41302862 -240890802 + (CA)n Simple_repeat Simple_repeat 2 154 0 2173 109 0 0 chr1 41303966 41304259 -240889405 - AluSg SINE Alu -17 293 1 295 248 23 135 chr1 41306385 41306518 -240887146 - L2 LINE L2 -157 3115 2998 652 271 83 17 chr1 41306532 41306772 -240886892 - MIR SINE MIR -3 259 4 336 247 0 0 chr1 41307105 41307178 -240886486 + MER103 DNA DNA 4 76 -90 2450 207 52 17 chr1 41307280 41307798 -240885866 - MLT1F LTR MaLR 0 542 7 366 215 149 0 chr1 41307990 41308097 -240885567 - MIR3 SINE MIR 0 208 86 615 279 91 31 chr1 41308908 41309195 -240884469 + L2 LINE L2 2998 3301 -12 247 260 110 0 chr1 41310378 41310451 -240883213 + L2 LINE L2 3197 3277 -36 475 320 53 20 chr1 41311913 41312157 -240881507 + L2 LINE L2 2813 3064 -208 524 283 7 26 chr1 41312674 41312826 -240880838 + L2 LINE L2 3165 3313 0 215 213 21 0 chr1 41313092 41313139 -240880525 + C-rich Low_complexity Low_complexity 1 48 0 504 285 29 70 chr1 41314070 41314312 -240879352 + L2 LINE L2 3010 3241 -72 386 342 149 32 chr1 41314353 41314795 -240878869 + L3 LINE CR1 344 837 -740 200 304 101 0 chr1 41315177 41315246 -240878418 - L2 LINE L2 -58 3214 3139 249 391 31 8 chr1 41315543 41315671 -240877993 - L2 LINE L2 -6 3266 3136 393 288 52 82 chr1 41316313 41316619 -240877045 + MLT1K LTR MaLR 183 479 -109 425 257 22 22 chr1 41317537 41317673 -240875991 - L2 LINE L2 -19 3294 3159 205 231 19 0 chr1 41317726 41317778 -240875886 - MIR SINE MIR -65 143 91 325 277 17 25 chr1 41317955 41318074 -240875590 - MER94 DNA DNA -1 133 16 447 308 82 6 chr1 41319251 41319410 -240874254 - MIR SINE MIR -43 219 49 498 270 30 55 chr1 41320556 41320756 -240872908 - MIR SINE MIR -29 233 39 444 202 12 0 chr1 41321083 41321167 -240872497 + MER96 DNA MER1_type? 91 175 0 185 226 19 0 chr1 41322040 41322093 -240871571 + GA-rich Low_complexity Low_complexity 3 56 0 264 310 48 48 chr1 41322322 41322467 -240871197 + MIR SINE MIR 112 256 -6 199 302 0 0 chr1 41323027 41323080 -240870584 - MIR3 SINE MIR -9 199 147 421 302 36 7 chr1 41323262 41323401 -240870263 - MIR SINE MIR -62 200 58 289 306 36 63 chr1 41324258 41324369 -240869295 - MIR SINE MIR -50 158 50 280 319 0 0 chr1 41324605 41324696 -240868968 + GA-rich Low_complexity Low_complexity 3 93 0 439 283 208 23 chr1 41325110 41325418 -240868246 + L2 LINE L2 2949 3313 0 218 307 99 0 chr1 41326044 41326145 -240867519 - L2 LINE L2 -28 3285 3175 615 310 54 0 chr1 41327060 41327139 -240866525 - MIR SINE MIR 0 262 189 2033 113 19 16 chr1 41327139 41327449 -240866215 - AluSx SINE Alu -1 311 1 615 310 54 0 chr1 41327449 41327611 -240866053 - MIR SINE MIR -73 189 8 298 353 39 20 chr1 41327680 41327833 -240865831 - MIR SINE MIR -59 203 48 211 252 0 29 chr1 41329271 41329374 -240864290 + GA-rich Low_complexity Low_complexity 1 100 0 379 231 115 9 chr1 41329612 41329740 -240863924 - MIR SINE MIR -68 140 4 183 288 236 19 chr1 41329760 41329963 -240863701 + L2 LINE L2 2996 3248 -24 207 0 0 0 chr1 41329963 41329986 -240863678 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 298 296 0 20 chr1 41330008 41330106 -240863558 + MIR SINE MIR 48 143 -119 652 278 144 21 chr1 41330144 41330277 -240863387 - L2 LINE L2 -2 3311 3196 231 36 0 0 chr1 41330277 41330305 -240863359 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 652 278 144 21 chr1 41330305 41330505 -240863159 - L2 LINE L2 -117 3196 2937 182 235 88 78 chr1 41330658 41330760 -240862904 - L2 LINE L2 0 3272 3170 225 318 115 30 chr1 41330893 41331134 -240862530 - L2 LINE L2 -252 3061 2606 265 354 0 0 chr1 41332248 41332344 -240861320 + (CA)n Simple_repeat Simple_repeat 1 96 0 269 294 34 25 chr1 41334303 41334422 -240859242 + L1MC5 LINE L1 7810 7929 -32 228 391 23 0 chr1 41337944 41338031 -240855633 + L2 LINE L2 3224 3312 -1 204 270 40 0 chr1 41338985 41339059 -240854605 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 244 276 40 0 chr1 41339162 41339238 -240854426 + MIR3 SINE MIR 112 190 -18 339 252 36 36 chr1 41339383 41339494 -240854170 - L2 LINE L2 -25 3247 3137 333 68 0 0 chr1 41340194 41340238 -240853426 + (GA)n Simple_repeat Simple_repeat 1 44 0 1016 48 0 0 chr1 41340347 41340473 -240853191 + AluSg/x SINE Alu 176 301 -11 629 288 49 4 chr1 41341005 41341235 -240852429 - MIR SINE MIR -2 260 21 318 358 75 15 chr1 41342073 41342274 -240851390 - MIR SINE MIR -1 261 49 451 303 8 0 chr1 41342665 41342784 -240850880 + MIR3 SINE MIR 55 174 -34 329 290 9 28 chr1 41344438 41344545 -240849119 - L2 LINE L2 0 3272 3168 289 349 0 0 chr1 41344650 41344733 -240848931 - MIR SINE MIR -174 88 6 447 265 204 5 chr1 41345258 41345469 -240848195 + MIR SINE MIR 9 261 -1 180 77 0 0 chr1 41345764 41345790 -240847874 + (TC)n Simple_repeat Simple_repeat 1 26 0 414 0 0 0 chr1 41345791 41345837 -240847827 + (TG)n Simple_repeat Simple_repeat 2 47 0 301 231 39 13 chr1 41347046 41347124 -240846540 - L2 LINE L2 0 3313 3234 205 267 160 0 chr1 41348048 41348123 -240845541 + L2 LINE L2 3185 3271 -1 387 279 73 7 chr1 41348966 41349102 -240844562 + MLT1K LTR MaLR 436 580 -8 472 273 119 6 chr1 41350210 41350386 -240843278 - MIR SINE MIR -6 256 61 291 353 80 5 chr1 41350698 41350977 -240842687 + L2 LINE L2 2725 3030 -242 2236 106 0 28 chr1 41350978 41351299 -240842365 - AluSx SINE Alu 0 312 1 464 293 73 50 chr1 41351528 41351787 -240841877 + LTR16C LTR ERVL 210 474 -17 591 113 0 0 chr1 41351813 41351893 -240841771 + MADE1 DNA Mariner 1 80 0 2644 148 17 13 chr1 41351980 41352087 -240841577 + L1MB4 LINE L1 5716 5821 -359 2351 77 0 7 chr1 41352087 41352397 -240841267 + AluY SINE Alu 1 308 -3 2644 148 17 13 chr1 41352397 41352750 -240840914 + L1MB4 LINE L1 5821 6178 -2 2021 122 3 13 chr1 41352859 41353163 -240840501 - AluY SINE Alu -10 301 1 282 344 89 13 chr1 41354670 41354827 -240838837 + MIR SINE MIR 34 202 -60 326 245 108 0 chr1 41354842 41354944 -240838720 - MER103 DNA DNA -1 165 53 1834 229 67 47 chr1 41356020 41356556 -240837108 - MLT1H LTR MaLR 0 549 3 563 350 38 25 chr1 41357707 41358021 -240835643 + L2 LINE L2 2660 2977 -337 196 240 120 13 chr1 41358398 41358473 -240835191 - MIR3 SINE MIR -10 198 116 371 224 152 24 chr1 41358646 41358771 -240834893 - MIR SINE MIR -120 142 2 389 294 63 7 chr1 41359056 41359199 -240834465 - MIR SINE MIR -79 183 33 307 264 14 0 chr1 41359332 41359404 -240834260 - L2 LINE L2 -3 3310 3238 231 325 13 0 chr1 41360012 41360089 -240833575 + MER5A DNA MER1_type 4 81 -108 803 234 159 0 chr1 41361018 41361232 -240832432 - MIR SINE MIR -10 252 5 310 254 0 0 chr1 41361399 41361466 -240832198 - L2 LINE L2 0 3313 3247 226 301 0 19 chr1 41361733 41361836 -240831828 + (CA)n Simple_repeat Simple_repeat 1 101 0 1132 129 0 20 chr1 41363832 41364079 -240829585 + (TCCA)n Simple_repeat Simple_repeat 1 242 0 454 341 59 45 chr1 41364091 41364378 -240829286 - L2 LINE L2 -17 3255 2965 1247 270 25 3 chr1 41364893 41365215 -240828449 - LTR16C LTR ERVL -11 480 152 2071 134 0 0 chr1 41365579 41365877 -240827787 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr1 41366946 41366967 -240826697 + (GGA)n Simple_repeat Simple_repeat 2 22 0 523 322 0 12 chr1 41367418 41367589 -240826075 - MIR SINE MIR -5 257 89 489 274 63 3 chr1 41368641 41368830 -240824834 + MIR SINE MIR 47 250 -12 180 331 131 28 chr1 41368879 41369024 -240824640 - MIR3 SINE MIR 0 208 49 286 271 48 46 chr1 41369096 41369226 -240824438 - MIR SINE MIR -61 147 20 519 288 72 11 chr1 41370284 41370494 -240823170 - MIR SINE MIR -3 259 2 921 166 25 0 chr1 41370840 41370997 -240822667 - FRAM SINE Alu -5 161 1 222 360 18 9 chr1 41370997 41371108 -240822556 + MIR SINE MIR 77 188 -74 1103 248 54 0 chr1 41371279 41371573 -240822091 + LTR16A LTR ERVL 90 399 -51 420 311 90 0 chr1 41371731 41371908 -240821756 + MIR SINE MIR 50 242 -20 626 244 102 11 chr1 41371981 41372157 -240821507 + MIR SINE MIR 69 260 -2 401 335 10 41 chr1 41372170 41372367 -240821297 - L3 LINE CR1 -471 1106 916 204 364 66 8 chr1 41372683 41372804 -240820860 - L3 LINE CR1 -805 772 645 198 367 100 17 chr1 41373782 41373902 -240819762 + MIR SINE MIR 81 210 -52 1035 168 97 10 chr1 41374415 41374611 -240819053 + MER20 DNA MER1_type 1 213 -6 393 287 0 9 chr1 41375502 41375610 -240818054 + L2 LINE L2 3175 3281 -32 186 71 0 0 chr1 41375619 41375647 -240818017 + (ACTG)n Simple_repeat Simple_repeat 4 31 0 294 342 68 0 chr1 41375960 41376077 -240817587 + L2 LINE L2 3139 3263 -9 299 299 97 52 chr1 41376141 41376275 -240817389 - MIR SINE MIR -15 247 108 357 24 0 0 chr1 41376550 41376592 -240817072 + (TG)n Simple_repeat Simple_repeat 2 43 0 1267 101 0 0 chr1 41377415 41377583 -240816081 + AluSg/x SINE Alu 131 298 -14 455 308 50 6 chr1 41377583 41377765 -240815899 + L2 LINE L2 3122 3311 -2 496 246 36 36 chr1 41377873 41378040 -240815624 - MIR SINE MIR 0 262 96 331 161 0 0 chr1 41378062 41378118 -240815546 - MIR SINE MIR -77 131 76 * 636 299 44 20 chr1 41378117 41378321 -240815343 - MIR SINE MIR -34 228 20 1393 208 17 10 chr1 41379265 41379559 -240814105 - LTR16C LTR ERVL -2 489 194 308 266 101 0 chr1 41379708 41379877 -240813787 + Charlie7 DNA MER1_type 2427 2612 0 1496 140 140 22 chr1 41380233 41380505 -240813159 - AluSg SINE Alu 0 310 7 379 327 37 12 chr1 41381757 41381919 -240811745 + MIR SINE MIR 54 219 -43 503 266 0 8 chr1 41383280 41383408 -240810256 - L2 LINE L2 0 3313 3187 204 311 66 8 chr1 41383422 41383544 -240810120 - L2 LINE L2 -473 2841 2713 503 271 7 20 chr1 41384383 41384545 -240809119 - MIR SINE MIR -62 146 13 857 223 47 33 chr1 41384730 41384945 -240808719 - MIR SINE MIR -28 234 17 199 241 0 74 chr1 41385186 41385240 -240808424 - L2 LINE L2 -13 3259 3210 600 245 45 20 chr1 41385767 41385967 -240807697 + MIR SINE MIR 20 224 -38 967 194 97 13 chr1 41386514 41386645 -240807019 + MIR SINE MIR 17 136 -126 288 0 0 0 chr1 41386645 41386677 -240806987 + (TAA)n Simple_repeat Simple_repeat 1 32 0 967 194 97 13 chr1 41386677 41386772 -240806892 + MIR SINE MIR 136 262 0 186 43 0 0 chr1 41387166 41387189 -240806475 + (TG)n Simple_repeat Simple_repeat 1 23 0 304 324 35 47 chr1 41387708 41387878 -240805786 + MIR SINE MIR 49 216 -46 304 256 56 22 chr1 41388007 41388097 -240805567 - MIR SINE MIR -168 94 2 192 316 0 0 chr1 41388237 41388294 -240805370 + MIR SINE MIR 82 138 -70 2757 22 0 0 chr1 41388298 41388611 -240805053 - AluYb8 SINE Alu -5 313 1 433 337 96 0 chr1 41388691 41388869 -240804795 + MIR SINE MIR 3 197 -65 215 273 18 0 chr1 41388897 41388952 -240804712 - MIR SINE MIR -29 233 178 523 242 163 0 chr1 41388985 41389138 -240804526 - MIR SINE MIR -51 211 34 232 239 0 0 chr1 41390138 41390184 -240803480 - L2 LINE L2 -17 3255 3210 312 267 58 70 chr1 41390286 41390462 -240803202 + MIR SINE MIR 45 214 -48 2302 107 53 28 chr1 41390538 41390893 -240802771 - THE1B LTR MaLR 0 364 1 839 311 131 16 chr1 41391466 41391909 -240801755 + L2 LINE L2 2819 3312 -1 213 327 0 0 chr1 41391910 41391962 -240801702 + polypurine Low_complexity Low_complexity 3 54 0 354 23 0 0 chr1 41392405 41392448 -240801216 + (TTTTC)n Simple_repeat Simple_repeat 5 47 0 485 110 11 0 chr1 41392455 41392546 -240801118 + (TC)n Simple_repeat Simple_repeat 1 92 0 292 280 76 51 chr1 41393821 41393939 -240799725 + MIR3 SINE MIR 36 156 -52 364 209 145 59 chr1 41394125 41394374 -240799290 - Charlie8 DNA MER1_type -1994 423 71 2013 140 3 3 chr1 41394503 41394810 -240798854 + AluSx SINE Alu 1 307 -5 1036 98 0 0 chr1 41394822 41394955 -240798709 + FLAM_C SINE Alu 1 133 0 2375 205 8 19 chr1 41395347 41395816 -240797848 + LTR31 LTR ERV1 141 604 -15 418 366 67 0 chr1 41395837 41396031 -240797633 - L3 LINE CR1 -128 1449 1243 23 33 0 0 chr1 41396411 41396441 -240797223 + AT_rich Low_complexity Low_complexity 1 30 0 266 266 0 0 chr1 41396601 41396665 -240796999 + L3b LINE CR1 1324 1387 -196 238 271 0 14 chr1 41397198 41397268 -240796396 + L2 LINE L2 3204 3272 0 300 27 0 0 chr1 41398662 41398699 -240794965 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 0 0 0 chr1 41398698 41398724 -240794940 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 395 370 23 23 chr1 41400153 41400326 -240793338 + L3 LINE CR1 381 553 -1024 559 362 81 20 chr1 41400333 41400617 -240793047 - L2 LINE L2 0 3272 2950 2256 114 0 0 chr1 41400617 41400925 -240792739 + AluSg SINE Alu 1 308 -2 559 362 81 20 chr1 41400925 41401082 -240792582 - L2 LINE L2 -322 2950 2804 257 365 0 9 chr1 41401163 41401278 -240792386 + L3 LINE CR1 608 721 -856 553 340 12 12 chr1 41401500 41401744 -240791920 + L3 LINE CR1 797 1040 -537 612 293 153 13 chr1 41401911 41402016 -240791648 - MIR SINE MIR 0 262 173 306 0 0 0 chr1 41402016 41402050 -240791614 + (TTA)n Simple_repeat Simple_repeat 2 35 0 612 293 153 13 chr1 41402050 41402073 -240791591 - MIR SINE MIR -89 173 155 1894 107 8 0 chr1 41402073 41402336 -240791328 + AluSg SINE Alu 39 303 -7 612 293 153 13 chr1 41402336 41402435 -240791229 - MIR SINE MIR -107 155 2 556 319 0 0 chr1 41402475 41402619 -240791045 - MIR SINE MIR -75 187 44 352 305 69 56 chr1 41402666 41402848 -240790816 + L3 LINE CR1 1339 1526 -51 999 242 0 0 chr1 41402848 41403034 -240790630 + MER5A DNA MER1_type 1 186 -3 352 305 69 56 chr1 41403034 41403084 -240790580 + L3 LINE CR1 1526 1574 -3 315 294 0 0 chr1 41404100 41404185 -240789479 - MIR SINE MIR -26 236 152 374 206 27 0 chr1 41404246 41404319 -240789345 - MIR SINE MIR -57 151 77 442 232 43 14 chr1 41404369 41404507 -240789157 - MER104 DNA Tc2 -35 145 4 377 222 135 32 chr1 41405012 41405138 -240788526 + MER96 DNA MER1_type? 37 175 0 257 226 0 0 chr1 41405235 41405288 -240788376 - MIR SINE MIR -111 151 99 202 231 0 31 chr1 41405642 41405707 -240787957 + GA-rich Low_complexity Low_complexity 2 64 0 244 346 68 31 chr1 41405759 41405921 -240787743 + L3 LINE CR1 393 560 -1017 422 293 50 14 chr1 41406270 41406410 -240787254 + MIR SINE MIR 6 150 -112 200 323 0 0 chr1 41406493 41406555 -240787109 + MIR SINE MIR 188 249 -13 213 205 0 0 chr1 41408090 41408129 -240785535 + C-rich Low_complexity Low_complexity 3 41 0 322 273 29 65 chr1 41408409 41408548 -240785116 - MIR3 SINE MIR -45 163 30 24 0 0 0 chr1 41411814 41411838 -240781826 + GC_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr1 41411848 41411879 -240781785 + GC_rich Low_complexity Low_complexity 1 31 0 227 113 0 65 chr1 41411915 41411977 -240781687 + (CTCGG)n Simple_repeat Simple_repeat 3 60 0 221 202 36 36 chr1 41412120 41412204 -240781460 + C-rich Low_complexity Low_complexity 6 89 0 449 295 20 55 chr1 41414691 41414891 -240778773 - MIR SINE MIR -1 261 69 637 131 8 16 chr1 41414901 41415023 -240778641 + (TCCC)n Simple_repeat Simple_repeat 4 124 0 308 259 17 11 chr1 41416902 41417076 -240776588 + (TTCA)n Simple_repeat Simple_repeat 1 175 0 225 356 19 10 chr1 41417101 41417205 -240776459 + (CTCA)n Simple_repeat Simple_repeat 3 107 0 230 216 14 0 chr1 41417205 41417279 -240776385 + (TTCA)n Simple_repeat Simple_repeat 3 77 0 252 185 0 0 chr1 41417300 41417354 -240776310 + (CTCA)n Simple_repeat Simple_repeat 2 55 0 229 192 0 26 chr1 41417836 41417914 -240775750 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 201 186 157 88 chr1 41417916 41418018 -240775646 - MIR3 SINE MIR -97 111 3 270 0 0 0 chr1 41419207 41419237 -240774427 + (CA)n Simple_repeat Simple_repeat 1 30 0 1140 185 19 0 chr1 41419266 41419482 -240774182 + MIR SINE MIR 21 240 -22 240 35 0 0 chr1 41419597 41419626 -240774038 + (CA)n Simple_repeat Simple_repeat 1 29 0 619 209 7 7 chr1 41422150 41422289 -240771375 - L1MB7 LINE L1 0 6184 6046 1299 198 111 10 chr1 41422315 41422603 -240771061 + MSTD LTR MaLR 70 386 -10 187 103 0 0 chr1 41422668 41422697 -240770967 + L2 LINE L2 2726 2754 -560 650 267 115 9 chr1 41422830 41423047 -240770617 - MIR SINE MIR -19 243 4 2324 106 0 0 chr1 41423074 41423385 -240770279 - AluSx SINE Alu -1 311 1 265 301 83 85 chr1 41423385 41423823 -240769841 + L2 LINE L2 2815 3253 -19 279 309 21 10 chr1 41423978 41424075 -240769589 + L2 LINE L2 3172 3269 -3 207 302 48 0 chr1 41424881 41424944 -240768720 - MIR SINE MIR -37 225 160 213 260 20 0 chr1 41425848 41425898 -240767766 + L2 LINE L2 3262 3312 -1 2303 58 0 3 chr1 41425917 41426208 -240767456 + AluY SINE Alu 22 311 0 189 326 51 39 chr1 41426959 41427137 -240766527 - L2 LINE L2 -1006 2308 2129 284 269 9 46 chr1 41427188 41427345 -240766319 + (CATATA)n Simple_repeat Simple_repeat 1 151 0 256 293 72 72 chr1 41428387 41428568 -240765096 - MIR SINE MIR -78 184 4 * 391 333 101 5 chr1 41428568 41428724 -240764940 + MIR SINE MIR 84 259 -3 200 250 0 0 chr1 41428725 41428773 -240764891 - MIR SINE MIR -142 66 19 427 337 35 63 chr1 41430280 41430565 -240763099 - L2 LINE L2 0 3272 2996 293 345 9 9 chr1 41430800 41430910 -240762754 - MIR3 SINE MIR -35 173 64 498 335 88 9 chr1 41431317 41431544 -240762120 - MIR SINE MIR -1 261 17 225 318 0 0 chr1 41431609 41431675 -240761989 + Charlie4 DNA MER1_type 1888 1953 -8 222 222 0 0 chr1 41432690 41432735 -240760929 + L2 LINE L2 3266 3310 -3 1633 173 21 10 chr1 41432860 41433149 -240760515 - AluJo SINE Alu -20 292 1 512 212 35 0 chr1 41433163 41433276 -240760388 - MIR SINE MIR -59 203 87 493 357 21 30 chr1 41433397 41433632 -240760032 - MIR SINE MIR -6 256 24 201 158 53 0 chr1 41433734 41433772 -240759892 - MIR SINE MIR -109 153 114 1926 100 30 0 chr1 41434602 41434873 -240758791 - AluSx SINE Alu 0 312 34 864 187 7 0 chr1 41434962 41435112 -240758552 - MER5A DNA MER1_type -5 184 34 453 279 35 6 chr1 41435136 41435308 -240758356 + L1ME4a LINE L1 5797 5973 -148 358 273 47 8 chr1 41435441 41435569 -240758095 - L2 LINE L2 -352 2962 2830 441 274 16 0 chr1 41435582 41435706 -240757958 + MIR SINE MIR 110 235 -27 706 308 102 24 chr1 41436098 41436510 -240757154 + L2 LINE L2 2869 3312 -1 1670 70 48 4 chr1 41437292 41437521 -240756143 - L1PA8 LINE L1 -6 6166 5928 885 211 13 89 chr1 41437692 41437995 -240755669 - MER33 DNA MER1_type -1 323 44 1082 296 160 30 chr1 41438089 41439146 -240754518 + L2 LINE L2 2051 3299 -14 240 35 0 0 chr1 41439147 41439176 -240754488 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 480 235 9 9 chr1 41439176 41439285 -240754379 + MIR SINE MIR 49 157 -105 479 322 40 64 chr1 41439309 41439638 -240754026 - MLT1I LTR MaLR -26 383 63 363 229 326 0 chr1 41439687 41439831 -240753833 - MIR SINE MIR -2 260 70 560 251 58 7 chr1 41440388 41440564 -240753100 - MIR SINE MIR -62 146 17 317 309 9 0 chr1 41440721 41440831 -240752833 + (TTCA)n Simple_repeat Simple_repeat 2 112 0 619 129 0 0 chr1 41441310 41441395 -240752269 - AluSc SINE Alu -8 301 217 201 238 12 50 chr1 41442038 41442118 -240751546 + GA-rich Low_complexity Low_complexity 1 77 0 196 284 163 21 chr1 41442294 41442435 -240751229 - MIR SINE MIR -54 208 48 182 305 147 21 chr1 41443073 41443168 -240750496 - L2 LINE L2 -1 3312 3206 1291 266 147 29 chr1 41443216 41444167 -240749497 + L2 LINE L2 2233 3313 0 1056 309 32 36 chr1 41444389 41445050 -240748614 - L1ME3A LINE L1 -219 5951 5425 211 209 47 0 chr1 41446224 41446267 -240747397 + L2 LINE L2 3228 3272 0 397 341 29 67 chr1 41447004 41447453 -240746211 - L2 LINE L2 -37 3235 2804 262 288 12 12 chr1 41447499 41447579 -240746085 - MIR SINE MIR -108 154 75 192 77 0 0 chr1 41448314 41448340 -240745324 + (TG)n Simple_repeat Simple_repeat 2 27 0 281 288 177 59 chr1 41448586 41448975 -240744689 + L2 LINE L2 2867 3301 -12 233 308 0 13 chr1 41449069 41449147 -240744517 + (TG)n Simple_repeat Simple_repeat 2 78 0 200 267 70 23 chr1 41449497 41449583 -240744081 - L2 LINE L2 -3 3269 3180 358 282 19 19 chr1 41449651 41449754 -240743910 + L2 LINE L2 3138 3240 -32 192 77 0 0 chr1 41449762 41449788 -240743876 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 662 227 141 23 chr1 41450480 41450700 -240742964 - MIR SINE MIR -13 249 4 227 222 0 0 chr1 41450958 41451003 -240742661 + MIR3 SINE MIR 158 202 -6 863 207 56 0 chr1 41452170 41452349 -240741315 - MER5A DNA MER1_type 0 189 1 997 251 31 9 chr1 41452398 41452625 -240741039 + MIR SINE MIR 30 261 -1 266 220 483 0 chr1 41453522 41453640 -240740024 - MER5A DNA MER1_type -6 183 9 288 366 24 38 chr1 41454812 41455025 -240738639 - L2 LINE L2 -119 3153 2944 272 350 24 32 chr1 41455082 41455205 -240738459 - L2 LINE L2 -1 3271 3150 342 0 0 0 chr1 41456020 41456058 -240737606 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 129 0 0 chr1 41456060 41456091 -240737573 + (GA)n Simple_repeat Simple_repeat 2 32 0 778 175 6 60 chr1 41456538 41456704 -240736960 - MER20 DNA MER1_type -62 157 1 255 204 19 0 chr1 41456945 41456999 -240736665 + MIR SINE MIR 42 96 -166 1099 185 9 44 chr1 41456999 41457226 -240736438 + MER20 DNA MER1_type 1 219 0 258 218 0 0 chr1 41457250 41457305 -240736359 + AluJ/monomer SINE Alu 242 296 -5 5687 76 18 71 chr1 41457308 41458649 -240735015 + SVA Other Other 1 868 -520 6610 63 6 62 chr1 41458703 41459714 -240733950 + SVA Other Other 433 1386 0 665 237 13 19 chr1 41459918 41460074 -240733590 + MIR SINE MIR 97 251 -11 1481 238 41 43 chr1 41460567 41461030 -240732634 + MLT1C LTR MaLR 6 467 0 188 319 124 32 chr1 41462060 41462245 -240731419 + L3 LINE CR1 644 845 -732 507 309 70 0 chr1 41462343 41462544 -240731120 - MIR SINE MIR -35 227 13 204 314 114 29 chr1 41462550 41462690 -240730974 + L3 LINE CR1 960 1111 -466 261 83 0 0 chr1 41462973 41463009 -240730655 + (T)n Simple_repeat Simple_repeat 1 36 0 2456 192 15 15 chr1 41463307 41463844 -240729820 - L1MB7 LINE L1 -10 6174 5638 336 252 27 18 chr1 41463997 41464108 -240729556 + MIR SINE MIR 98 209 -53 848 208 153 9 chr1 41464108 41464363 -240729301 + MLT1E LTR MaLR 10 396 -258 1183 229 33 78 chr1 41464408 41464740 -240728924 + MLT1E LTR MaLR 277 593 0 203 343 88 5 chr1 41464893 41465097 -240728567 + L2 LINE L2 1751 1971 -1343 213 39 0 0 chr1 41465209 41465235 -240728429 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 966 313 32 27 chr1 41465242 41465928 -240727736 - L2 LINE L2 -46 3267 2578 1053 286 3 55 chr1 41465932 41466313 -240727351 - LTR16A LTR ERVL -6 444 84 435 356 70 15 chr1 41466335 41466666 -240726998 - L2 LINE L2 -733 2581 2233 604 287 242 18 chr1 41466688 41467315 -240726349 - L2 LINE L2 -1212 2102 1335 200 337 111 21 chr1 41467894 41468182 -240725482 + L2 LINE L2 2009 2322 -992 3010 153 35 9 chr1 41468278 41468853 -240724811 - L1MC1 LINE L1 -1 6332 5743 310 243 0 0 chr1 41468899 41468969 -240724695 + L2 LINE L2 3244 3313 0 330 360 68 34 chr1 41469123 41469417 -240724247 + L2 LINE L2 2436 2739 -575 239 261 43 0 chr1 41469499 41469568 -240724096 + MIR SINE MIR 189 260 -2 448 374 14 5 chr1 41469581 41469795 -240723869 + L3 LINE CR1 1204 1419 -158 483 311 50 6 chr1 41470314 41470475 -240723189 + MIR SINE MIR 25 192 -70 197 246 16 49 chr1 41470830 41470891 -240722773 + L2 LINE L2 3170 3228 -85 207 146 0 0 chr1 41471659 41471700 -240721964 + (CA)n Simple_repeat Simple_repeat 1 41 0 325 310 78 52 chr1 41472289 41472557 -240721107 - L3 LINE CR1 -125 1452 1178 590 277 33 5 chr1 41472674 41472858 -240720806 - MIR SINE MIR -5 257 69 263 279 13 25 chr1 41473117 41473196 -240720468 + MIR SINE MIR 22 99 -163 416 256 27 131 chr1 41474155 41474491 -240719173 + MLT1H LTR MaLR 64 364 -185 181 259 56 28 chr1 41474669 41474777 -240718887 - L2 LINE L2 -1208 2106 1996 492 306 55 16 chr1 41475419 41475729 -240717935 + L1ME4a LINE L1 5788 6109 -12 670 259 48 0 chr1 41476233 41476399 -240717265 + MER58C DNA MER1_type 1 174 -41 414 299 83 0 chr1 41476781 41476925 -240716739 - MIR SINE MIR -90 172 17 303 303 88 23 chr1 41477173 41477359 -240716305 - MIR SINE MIR -62 146 3 672 215 103 60 chr1 41477997 41478221 -240715443 + MLT1H LTR MaLR 30 305 -244 186 103 0 0 chr1 41478233 41478262 -240715402 + (CAGCC)n Simple_repeat Simple_repeat 2 30 0 527 227 149 5 chr1 41478369 41478635 -240715029 + MER2 DNA MER2_type 7 345 0 207 343 0 0 chr1 41478656 41478729 -240714935 + (CA)n Simple_repeat Simple_repeat 1 73 0 503 279 159 10 chr1 41479379 41479587 -240714077 + MIR SINE MIR 24 262 0 198 248 133 57 chr1 41479606 41479711 -240713953 + L2 LINE L2 3201 3313 0 182 341 110 0 chr1 41480011 41480102 -240713562 - MIR3 SINE MIR -21 187 87 1097 122 0 6 chr1 41480298 41480376 -240713288 + (GGA)n Simple_repeat Simple_repeat 1 256 0 1097 122 0 6 chr1 41480376 41480556 -240713108 + (GGA)n Simple_repeat Simple_repeat 2 180 0 358 350 43 7 chr1 41481017 41481157 -240712507 - L2 LINE L2 -3 3269 3125 2068 153 3 0 chr1 41481170 41481471 -240712193 + AluSq SINE Alu 1 302 -11 388 307 50 35 chr1 41481958 41482160 -240711504 - L2 LINE L2 -220 3052 2848 283 252 107 10 chr1 41482394 41482497 -240711167 - L2 LINE L2 -462 2852 2740 1713 278 135 16 chr1 41482517 41483281 -240710383 - L2 LINE L2 -1117 2197 1343 528 257 65 46 chr1 41483926 41484145 -240709519 - MIR SINE MIR -35 227 8 467 313 14 7 chr1 41484328 41484472 -240709192 + MIR SINE MIR 36 180 -82 347 287 193 11 chr1 41484503 41484684 -240708980 - L3 LINE CR1 -471 1106 893 187 288 68 0 chr1 41485175 41485248 -240708416 - MIR SINE MIR -67 195 118 257 150 0 0 chr1 41485908 41485948 -240707716 - MER117 DNA MER1_type -48 149 110 829 86 0 0 chr1 41488711 41488816 -240704848 + AluY SINE Alu 199 303 -8 2288 117 10 0 chr1 41488829 41489137 -240704527 + AluSx SINE Alu 1 311 -1 283 291 35 0 chr1 41489541 41489627 -240704037 + LTR67 LTR ERVL 439 527 -30 498 266 150 30 chr1 41489686 41489919 -240703745 + MIR SINE MIR 2 262 0 587 331 61 33 chr1 41490019 41490412 -240703252 + L3 LINE CR1 759 1162 -415 325 343 14 20 chr1 41490562 41490708 -240702956 - MER117 DNA MER1_type 0 197 53 1195 241 89 45 chr1 41490940 41491343 -240702321 + MLT1J2 LTR MaLR 1 421 -29 459 269 50 28 chr1 41491396 41491578 -240702086 + MER5A DNA MER1_type 3 188 -1 473 290 95 18 chr1 41492192 41492361 -240701303 + MIR SINE MIR 22 203 -59 315 224 93 9 chr1 41492512 41492619 -240701045 + MIR SINE MIR 81 196 -66 180 152 0 0 chr1 41492637 41492670 -240700994 + (TG)n Simple_repeat Simple_repeat 2 34 0 496 216 108 22 chr1 41492712 41492851 -240700813 - MIR SINE MIR -1 261 111 318 322 25 0 chr1 41493242 41493363 -240700301 + L1ME LINE L1 5610 5733 -437 1748 139 163 39 chr1 41493642 41493865 -240699799 - MSTA LTR MaLR 0 428 234 2294 138 0 0 chr1 41493865 41494176 -240699488 - AluSx SINE Alu -1 311 1 1748 139 163 39 chr1 41494176 41494333 -240699331 - MSTA LTR MaLR -194 234 1 26 30 0 0 chr1 41494376 41494409 -240699255 + AT_rich Low_complexity Low_complexity 1 33 0 2088 140 3 0 chr1 41494454 41494762 -240698902 - AluSx SINE Alu -3 309 1 598 244 65 6 chr1 41494858 41495026 -240698638 - MIR SINE MIR -3 259 82 230 203 81 54 chr1 41495130 41495204 -240698460 - MIR SINE MIR -74 188 113 182 347 53 0 chr1 41495579 41495654 -240698010 + MIR3 SINE MIR 87 165 -43 576 307 42 5 chr1 41496259 41496458 -240697206 + MLT1H1 LTR MaLR 3 249 -300 276 284 0 17 chr1 41496478 41496594 -240697070 + GA-rich Low_complexity Low_complexity 1 114 0 833 206 0 13 chr1 41498301 41498456 -240695208 - MER45A DNA AcHobo -24 154 2 362 200 252 58 chr1 41498582 41498683 -240694981 + MIR SINE MIR 77 157 -105 919 171 12 0 chr1 41498683 41498847 -240694817 + FRAM SINE Alu 1 166 0 362 200 252 58 chr1 41498847 41498900 -240694764 + MIR SINE MIR 157 261 -1 269 291 127 9 chr1 41499160 41499270 -240694394 - L2 LINE L2 0 3313 3191 568 251 70 12 chr1 41499343 41499514 -240694150 - MIR SINE MIR -14 248 68 198 351 199 0 chr1 41499513 41499644 -240694020 - L2 LINE L2 0 3272 3116 * 252 220 0 0 chr1 41499741 41499791 -240693873 + L2 LINE L2 3223 3272 0 630 282 58 16 chr1 41499808 41500135 -240693529 - L2 LINE L2 -241 3031 2687 677 279 89 68 chr1 41500154 41500638 -240693026 + MLT1H LTR MaLR 7 542 -7 682 236 89 11 chr1 41501636 41501827 -240691837 - MIR SINE MIR -3 259 54 313 312 103 59 chr1 41501828 41502351 -240691313 - LTR67 LTR ERVL -10 547 2 313 273 34 11 chr1 41502815 41502903 -240690761 + L1MCa LINE L1 1975 2064 -4362 713 277 99 5 chr1 41502916 41503129 -240690535 - MIR SINE MIR -26 236 4 389 246 51 116 chr1 41503130 41503406 -240690258 + L2 LINE L2 3015 3272 0 2263 129 0 3 chr1 41503784 41504095 -240689569 - AluJb SINE Alu 0 312 3 190 293 24 49 chr1 41504095 41504177 -240689487 + MER5A DNA MER1_type 4 83 -106 251 247 26 13 chr1 41504345 41504422 -240689242 - MIR SINE MIR -91 117 40 905 247 17 17 chr1 41505173 41505412 -240688252 - MIR SINE MIR -21 241 3 207 292 135 45 chr1 41505913 41506002 -240687662 + MIR3 SINE MIR 66 162 -46 277 342 17 8 chr1 41506627 41506744 -240686920 - L2 LINE L2 -993 2321 2204 835 306 36 59 chr1 41506852 41507505 -240686159 - L2 LINE L2 0 3272 2632 296 274 74 15 chr1 41508040 41508175 -240685489 + L2 LINE L2 2896 3038 -234 434 259 43 17 chr1 41508179 41508295 -240685369 - L2 LINE L2 -1 3271 3153 1147 72 12 0 chr1 41509305 41509472 -240684192 + (TTCC)n Simple_repeat Simple_repeat 4 172 0 2102 146 0 0 chr1 41509495 41509796 -240683868 - AluSx SINE Alu -11 301 1 207 300 70 0 chr1 41509801 41509901 -240683763 + MIR SINE MIR 117 223 -39 303 278 0 0 chr1 41510499 41510571 -240683093 + MIR SINE MIR 164 235 -27 822 244 25 5 chr1 41510596 41510797 -240682867 - MIR SINE MIR -44 218 14 219 287 11 0 chr1 41511261 41511348 -240682316 + (TG)n Simple_repeat Simple_repeat 1 88 0 235 230 58 72 chr1 41512524 41512663 -240681001 - L2 LINE L2 -211 3061 2925 459 271 90 6 chr1 41512682 41512848 -240680816 - MIR SINE MIR -2 260 81 4243 116 17 2 chr1 41513112 41513744 -240679920 - L1MA5A LINE L1 -3 6294 5653 271 298 96 0 chr1 41513850 41513954 -240679710 - MIR SINE MIR -63 145 32 195 244 0 0 chr1 41514025 41514070 -240679594 + L2 LINE L2 3267 3311 -2 266 378 56 17 chr1 41515288 41515521 -240678143 + L3b LINE CR1 1342 1583 0 485 283 80 0 chr1 41515623 41515761 -240677903 - MIR SINE MIR -3 259 111 208 248 30 30 chr1 41516348 41516449 -240677215 + (CAGAGA)n Simple_repeat Simple_repeat 3 103 0 454 206 59 0 chr1 41516531 41516633 -240677031 - L2 LINE L2 -20 3293 3186 248 0 31 0 chr1 41516779 41516811 -240676853 + (GA)n Simple_repeat Simple_repeat 2 34 0 304 289 0 0 chr1 41517005 41517109 -240676555 + (CAGA)n Simple_repeat Simple_repeat 2 105 0 515 264 47 0 chr1 41519187 41519316 -240674348 - L2 LINE L2 0 3272 3138 2282 67 3 10 chr1 41519402 41519700 -240673964 + AluY SINE Alu 1 296 -15 216 270 18 27 chr1 41520961 41521072 -240672592 + GA-rich Low_complexity Low_complexity 2 111 0 268 302 12 12 chr1 41521833 41521919 -240671745 - MIR SINE MIR -166 96 11 501 299 20 25 chr1 41522241 41522445 -240671219 - L1ME4a LINE L1 -239 5882 5680 190 361 14 14 chr1 41523285 41523357 -240670307 - MIR SINE MIR -166 96 25 212 300 217 28 chr1 41524670 41524850 -240668814 - L2 LINE L2 -1 3312 3099 314 317 99 7 chr1 41525771 41525913 -240667751 + MIR3 SINE MIR 5 159 -49 277 151 38 0 chr1 41526021 41526074 -240667590 + MIR3 SINE MIR 151 205 -3 210 324 44 0 chr1 41526161 41526229 -240667435 - L3 LINE CR1 -1106 471 401 1273 106 0 0 chr1 41526501 41526681 -240666983 - AluSc SINE Alu -10 299 120 369 113 0 0 chr1 41526681 41526734 -240666930 + AluSc SINE Alu 50 102 -197 191 335 79 6 chr1 41526998 41527162 -240666502 - L2 LINE L2 -579 2735 2560 192 339 32 0 chr1 41527225 41527287 -240666377 - L3 LINE CR1 -3 1574 1511 755 243 24 18 chr1 41528395 41528564 -240665100 - MER5B DNA MER1_type -2 176 7 230 254 32 0 chr1 41529534 41529597 -240664067 + MER91B DNA MER1_type 2 66 -124 675 283 38 115 chr1 41529692 41530169 -240663495 + L2 LINE L2 2832 3271 -1 738 256 37 21 chr1 41530541 41530732 -240662932 - MIR SINE MIR -48 214 21 306 256 102 44 chr1 41531276 41531413 -240662251 + MIR3 SINE MIR 3 147 -61 * 765 311 52 61 chr1 41531338 41531897 -240661767 + L2 LINE L2 2720 3272 0 547 295 45 22 chr1 41531907 41532131 -240661533 - LTR67 LTR ERVL -3 554 326 266 200 0 0 chr1 41532239 41532284 -240661380 - LTR67 LTR ERVL -405 152 108 3422 75 26 7 chr1 41532297 41532753 -240660911 - L1PA10 LINE L1 -2 6166 5702 330 284 69 0 chr1 41532915 41533017 -240660647 + MIR3 SINE MIR 88 196 -12 286 254 0 0 chr1 41533097 41533160 -240660504 - MLT1I LTR MaLR -2 407 345 895 239 175 69 chr1 41533417 41534027 -240659637 - L2 LINE L2 0 3313 2639 768 271 66 17 chr1 41534190 41534550 -240659114 - MLT1I LTR MaLR 0 409 32 535 239 110 0 chr1 41534962 41535125 -240658539 - MIR SINE MIR 0 262 82 387 255 46 0 chr1 41535142 41535257 -240658407 - MLT1J2 LTR MaLR -265 146 27 325 243 14 0 chr1 41535269 41535339 -240658325 - MIR SINE MIR -187 75 5 390 42 0 0 chr1 41536422 41536470 -240657194 + (CA)n Simple_repeat Simple_repeat 1 48 0 1070 281 64 46 chr1 41536529 41536985 -240656679 - LTR67 LTR ERVL -35 522 59 2351 103 24 34 chr1 41537414 41537793 -240655871 + THE1C LTR MaLR 1 375 0 231 241 54 98 chr1 41537809 41537921 -240655743 - L2 LINE L2 -493 2821 2715 442 282 108 61 chr1 41537946 41538159 -240655505 + MIR SINE MIR 36 258 -4 12466 204 37 24 chr1 41539458 41541375 -240652289 - L1MB7 LINE L1 -1 6681 4789 207 0 0 0 chr1 41541375 41541398 -240652266 + (TG)n Simple_repeat Simple_repeat 2 24 0 12466 204 37 24 chr1 41541398 41542442 -240651222 - L1MB7 LINE L1 -1893 4789 3760 2182 89 0 0 chr1 41542442 41542752 -240650912 + AluY SINE Alu 1 310 0 12466 204 37 24 chr1 41542752 41543841 -240649823 - L1MB7 LINE L1 -2922 3760 2601 216 67 0 0 chr1 41543841 41543871 -240649793 + (TTG)n Simple_repeat Simple_repeat 2 31 0 12466 204 37 24 chr1 41543871 41544426 -240649238 - L1MB7 LINE L1 -4081 2601 2054 5944 70 14 3 chr1 41544434 41545205 -240648459 - L1PA8 LINE L1 -1 6171 5392 7249 208 46 27 chr1 41545211 41545777 -240647887 - L1MB7 LINE L1 -4769 1877 1323 457 63 13 13 chr1 41545777 41545856 -240647808 + (TA)n Simple_repeat Simple_repeat 1 79 0 7249 208 46 27 chr1 41545856 41547121 -240646543 - L1MB7 LINE L1 -5323 1323 14 420 333 28 0 chr1 41548929 41549073 -240644591 - MIR SINE MIR -68 194 47 595 285 26 42 chr1 41549980 41550173 -240643491 - MIR3 SINE MIR -3 205 16 350 344 21 67 chr1 41550460 41550745 -240642919 - L2 LINE L2 -93 3220 2948 651 258 20 25 chr1 41551023 41551221 -240642443 + MIR SINE MIR 63 259 -3 694 283 172 15 chr1 41552715 41553058 -240640606 + LTR33 LTR ERVL 125 521 0 482 291 65 82 chr1 41553602 41553908 -240639756 - L2 LINE L2 0 3272 2972 210 284 131 22 chr1 41554231 41554414 -240639250 - L2 LINE L2 -1135 2179 1977 287 304 114 27 chr1 41554468 41554652 -240639012 + MIR SINE MIR 58 257 -5 209 190 17 0 chr1 41554928 41554986 -240638678 - L2 LINE L2 -340 2974 2916 1110 213 32 0 chr1 41555921 41556137 -240637527 + MER58A DNA MER1_type 2 224 0 370 321 202 6 chr1 41556227 41556395 -240637269 - MIR SINE MIR -41 221 21 389 254 49 25 chr1 41556643 41556765 -240636899 - MIR SINE MIR -70 192 68 1003 270 194 9 chr1 41557089 41557634 -240636030 + L2 LINE L2 2248 2893 -421 1043 264 92 14 chr1 41557726 41558086 -240635578 + L2 LINE L2 2910 3297 -16 209 333 33 0 chr1 41558136 41558226 -240635438 + MIR SINE MIR 64 156 -106 1562 88 10 0 chr1 41558372 41558577 -240635087 - AluSg/x SINE Alu -19 293 87 555 303 51 10 chr1 41558676 41558871 -240634793 + MIR SINE MIR 56 258 -4 229 326 128 20 chr1 41559384 41559580 -240634084 + L1MEc LINE L1 165 381 -6015 1065 268 112 51 chr1 41559699 41560458 -240633206 + L1MEc LINE L1 509 1211 -4994 * 5457 166 32 49 chr1 41560452 41561634 -240632030 + L1MC2 LINE L1 5186 6343 -1 2388 216 117 24 chr1 41561639 41561709 -240631955 + L1MEc LINE L1 1311 1373 -4842 324 0 0 0 chr1 41561709 41561745 -240631919 + (CA)n Simple_repeat Simple_repeat 2 37 0 2388 216 117 24 chr1 41561745 41562744 -240630920 + L1MEc LINE L1 1373 2474 -3741 7461 29 10 0 chr1 41562744 41563671 -240629993 + L1PA4 LINE L1 5216 6151 -4 2388 216 117 24 chr1 41563671 41563781 -240629883 + L1MEc LINE L1 2474 2572 -3643 29 28 0 0 chr1 41563805 41563841 -240629823 + AT_rich Low_complexity Low_complexity 1 36 0 387 336 15 15 chr1 41564207 41564344 -240629320 + L2 LINE L2 3136 3272 0 206 176 0 39 chr1 41564349 41564400 -240629264 + GA-rich Low_complexity Low_complexity 3 51 0 287 249 22 37 chr1 41565489 41565687 -240627977 + L1MC5 LINE L1 7609 7902 -140 2081 123 3 7 chr1 41566065 41566365 -240627299 + AluSx SINE Alu 1 299 -13 595 299 100 4 chr1 41566435 41566666 -240626998 - MIR SINE MIR -2 260 8 213 156 0 22 chr1 41567372 41567417 -240626247 + T-rich Low_complexity Low_complexity 5 48 0 423 0 0 0 chr1 41568290 41568337 -240625327 + (TC)n Simple_repeat Simple_repeat 1 47 0 421 283 52 29 chr1 41569542 41569814 -240623850 - HAL1 LINE L1 -5 2502 2225 342 294 121 88 chr1 41569894 41570439 -240623225 + MLT1K LTR MaLR 26 588 0 1145 268 102 59 chr1 41570658 41571605 -240622059 - HAL1 LINE L1 -698 1809 822 5343 141 32 35 chr1 41571719 41571854 -240621810 + L1MA7 LINE L1 4722 4856 -1435 902 122 0 23 chr1 41571854 41571985 -240621679 - FLAM_C SINE Alu -5 128 1 5343 141 32 35 chr1 41571985 41572742 -240620922 + L1MA7 LINE L1 4856 5616 -675 2250 145 29 67 chr1 41572742 41572936 -240620728 + MSTB1 LTR MaLR 1 201 -231 1508 167 74 4 chr1 41572936 41573193 -240620471 - AluJb SINE Alu -37 275 1 2250 145 29 67 chr1 41573193 41573445 -240620219 + MSTB1 LTR MaLR 201 430 -2 5343 141 32 35 chr1 41573445 41574119 -240619545 + L1MA7 LINE L1 5616 6291 0 1392 92 36 119 chr1 41574244 41574495 -240619169 - MER30 DNA MER1_type 0 230 1 245 270 58 58 chr1 41574941 41575078 -240618586 - HAL1 LINE L1 -2366 141 5 2929 199 31 9 chr1 41575973 41576627 -240617037 + L1MD2 LINE L1 5475 6142 -217 9632 160 56 21 chr1 41576638 41577590 -240616074 + L1MA9 LINE L1 3006 3923 -2389 1752 201 0 10 chr1 41577590 41577888 -240615776 + AluJo SINE Alu 4 298 -14 9632 160 56 21 chr1 41577888 41578341 -240615323 + L1MA9 LINE L1 3923 4359 -1953 2745 112 4 86 chr1 41578341 41578869 -240614795 + L1PB1 LINE L1 5659 6148 -3 9632 160 56 21 chr1 41578869 41580454 -240613210 + L1MA9 LINE L1 4359 6104 -208 493 170 0 21 chr1 41580455 41580549 -240613115 - Tigger5 DNA MER2_type -1 2322 2231 * 1312 242 34 3 chr1 41580523 41580820 -240612844 - Tigger5 DNA MER2_type -2016 307 2 302 161 0 0 chr1 41580822 41580884 -240612780 + L1MA9 LINE L1 6104 6165 -147 361 124 19 57 chr1 41580888 41580993 -240612671 + GA-rich Low_complexity Low_complexity 4 104 0 746 121 64 0 chr1 41580995 41581135 -240612529 + L1MA9 LINE L1 6162 6310 -2 641 162 0 0 chr1 41581180 41581285 -240612379 + U6 snRNA snRNA 1 105 -2 786 147 0 14 chr1 41581286 41581429 -240612235 + L1MB3 LINE L1 5555 5695 -488 * 11618 204 29 38 chr1 41581414 41584685 -240608979 + L1MA7 LINE L1 2617 5862 -1703 1815 170 14 0 chr1 41584685 41584967 -240608697 + AluJo SINE Alu 3 288 -24 11618 204 29 38 chr1 41584967 41585512 -240608152 + L1MA7 LINE L1 5862 6411 -1154 726 34 0 0 chr1 41585512 41585600 -240608064 + L1PA3 LINE L1 5 92 -6054 37540 34 3 4 chr1 41585600 41590960 -240602704 + L1PA3 LINE L1 617 5978 -177 2627 82 70 21 chr1 41590960 41591387 -240602277 - LTR7 LTR ERV1 -2 448 1 37540 34 3 4 chr1 41591387 41591565 -240602099 + L1PA3 LINE L1 5978 6155 0 1632 97 85 6 chr1 41591940 41592266 -240601398 + LTR7 LTR ERV1 1 412 -38 1265 138 0 0 chr1 41592297 41592478 -240601186 + AluSg/x SINE Alu 125 305 -7 5356 147 9 22 chr1 41592478 41593739 -240599925 + L1MA7 LINE L1 6415 7659 -51 720 162 7 59 chr1 41593739 41593875 -240599789 + FLAM_A SINE Alu 1 129 -4 5356 147 9 22 chr1 41593875 41593925 -240599739 + L1MA7 LINE L1 7659 7708 -2 2220 139 8 3 chr1 41593964 41594324 -240599340 + L1MB3 LINE L1 5815 6176 -7 9845 196 48 57 chr1 41595359 41596272 -240597392 + L1MD2 LINE L1 18 938 -5602 2444 21 4 0 chr1 41596272 41596553 -240597111 - L1PA5 LINE L1 -9 6145 5864 9845 196 48 57 chr1 41596553 41596662 -240597002 + L1MD2 LINE L1 938 1047 -5493 2106 137 3 16 chr1 41596662 41596975 -240596689 + AluSx SINE Alu 1 309 -3 9845 196 48 57 chr1 41596975 41597847 -240595817 + L1MD2 LINE L1 1047 1926 -4614 1901 165 13 0 chr1 41597847 41598150 -240595514 + AluJb SINE Alu 1 307 -5 9845 196 48 57 chr1 41598150 41598667 -240594997 + L1MD2 LINE L1 1926 2446 -4094 2248 90 10 0 chr1 41598667 41598956 -240594708 + AluSc SINE Alu 1 292 -17 9845 196 48 57 chr1 41598956 41599569 -240594095 + L1MD2 LINE L1 2446 4304 -2236 3024 179 65 120 chr1 41599549 41599932 -240593732 + L1MD2 LINE L1 5288 5691 -945 * 3837 125 7 101 chr1 41599932 41600594 -240593070 + L1MB2 LINE L1 5426 5998 -173 2051 146 24 18 chr1 41600594 41600929 -240592735 - MER1B DNA MER1_type 0 337 1 3837 125 7 101 chr1 41600929 41601088 -240592576 + L1MB2 LINE L1 5998 6170 -1 3024 179 65 120 chr1 41601088 41602060 -240591604 + L1MD2 LINE L1 5691 6626 -10 676 232 50 0 chr1 41602383 41602564 -240591100 - Charlie4 DNA MER1_type -1766 195 6 573 134 0 17 chr1 41602571 41602690 -240590974 - L1M4 LINE L1 -3150 2996 2880 389 323 53 0 chr1 41603381 41603514 -240590150 + MIR3 SINE MIR 51 190 -18 225 65 0 0 chr1 41603771 41603802 -240589862 + (CA)n Simple_repeat Simple_repeat 1 31 0 182 331 119 26 chr1 41603893 41604044 -240589620 + L3 LINE CR1 712 876 -701 202 274 96 14 chr1 41604083 41604156 -240589508 + L3 LINE CR1 813 891 -686 2028 101 0 0 chr1 41604523 41604780 -240588884 - AluSc SINE Alu -19 290 34 515 219 29 22 chr1 41605222 41605359 -240588305 + MLT1L LTR MaLR 142 279 -336 1015 180 49 88 chr1 41605517 41605823 -240587841 + MSTC LTR MaLR 135 428 0 870 309 99 6 chr1 41606167 41606510 -240587154 - L2 LINE L2 -19 3294 2920 270 322 0 0 chr1 41606524 41606611 -240587053 - MER112 DNA MER1_type -1 259 173 5291 134 32 23 chr1 41606644 41606831 -240586833 - L1MA9 LINE L1 -23 6289 6105 2390 93 14 17 chr1 41606831 41607187 -240586477 - THE1A LTR MaLR 0 355 1 5291 134 32 23 chr1 41607187 41608927 -240584737 - L1MA9 LINE L1 -207 6105 4349 2258 227 294 15 chr1 41608926 41610029 -240583635 - L1M3c LINE L1 -4850 2187 775 * 522 216 72 22 chr1 41610055 41610236 -240583428 - MER112 DNA MER1_type -70 190 1 386 282 147 20 chr1 41610297 41610645 -240583019 - L2 LINE L2 -1196 2118 1727 198 348 107 21 chr1 41610678 41610865 -240582799 + L3 LINE CR1 1034 1236 -341 374 252 74 37 chr1 41611426 41611561 -240582103 + MIR SINE MIR 110 249 -13 428 344 100 46 chr1 41611579 41611989 -240581675 + L2 LINE L2 2841 3272 0 221 265 0 20 chr1 41613104 41613153 -240580511 - MIR SINE MIR -195 67 20 749 194 72 65 chr1 41613737 41614075 -240579589 - MER31B LTR ERV1 -5 461 1 2440 135 67 0 chr1 41614306 41614707 -240578957 - MSTC LTR MaLR 0 428 1 346 296 49 25 chr1 41614827 41614989 -240578675 - MIR SINE MIR -46 216 51 293 328 41 16 chr1 41615025 41615147 -240578517 + L2 LINE L2 3140 3264 -8 * 479 310 35 20 chr1 41615144 41615389 -240578275 - MIR SINE MIR -3 259 8 462 266 38 25 chr1 41616261 41616419 -240577245 + MIR SINE MIR 25 184 -78 768 264 103 53 chr1 41616558 41617032 -240576632 + LTR33 LTR ERVL 16 513 -8 207 179 0 0 chr1 41617105 41617144 -240576520 + L2 LINE L2 3017 3055 -217 272 371 17 0 chr1 41617869 41617985 -240575679 + MIR3 SINE MIR 81 198 -10 197 235 59 0 chr1 41618169 41618220 -240575444 - MIR SINE MIR -14 248 195 296 48 24 0 chr1 41618810 41618852 -240574812 + (TG)n Simple_repeat Simple_repeat 1 43 0 338 271 93 0 chr1 41619270 41619377 -240574287 + MIR SINE MIR 55 171 -91 381 366 71 18 chr1 41619611 41619892 -240573772 + L3 LINE CR1 607 902 -675 303 345 95 16 chr1 41619894 41620146 -240573518 + L2 LINE L2 2982 3253 -19 472 273 21 21 chr1 41620171 41620314 -240573350 + L3 LINE CR1 916 1058 -519 525 298 30 6 chr1 41621519 41621687 -240571977 + MIR SINE MIR 38 209 -53 428 293 90 0 chr1 41622086 41622219 -240571445 + MIR SINE MIR 117 261 -1 315 304 73 48 chr1 41622624 41622792 -240570872 + MIR SINE MIR 33 203 -58 437 236 11 115 chr1 41622988 41623032 -240570632 - MIR SINE MIR -72 190 143 1953 178 99 15 chr1 41623032 41623498 -240570166 + MLT1D LTR MaLR 1 505 0 1958 124 23 23 chr1 41623508 41623814 -240569850 - AluJb SINE Alu -6 306 1 437 236 11 115 chr1 41623814 41623940 -240569724 - MIR SINE MIR -128 134 28 388 263 11 0 chr1 41623988 41624083 -240569581 + L3 LINE CR1 1430 1525 -52 398 279 57 14 chr1 41624943 41625083 -240568581 - L2 LINE L2 -4 3309 3164 190 274 171 7 chr1 41625640 41625786 -240567878 - L2 LINE L2 -893 2421 2252 189 0 0 0 chr1 41625819 41625840 -240567824 + (GGCTG)n Simple_repeat Simple_repeat 4 24 0 429 76 15 0 chr1 41626532 41626598 -240567066 + L1PB2 LINE L1 6082 6148 -3 2119 136 3 10 chr1 41626764 41627065 -240566599 - AluSq SINE Alu -14 299 1 821 205 11 123 chr1 41628113 41628381 -240565283 + MIR SINE MIR 25 262 0 333 284 101 35 chr1 41629562 41629731 -240563933 + MLT1H LTR MaLR 119 298 -251 1898 182 11 3 chr1 41629929 41630291 -240563373 + MLT1A1 LTR MaLR 1 365 0 720 234 33 5 chr1 41630809 41630993 -240562671 + MIR SINE MIR 61 249 -13 563 278 37 12 chr1 41631394 41631556 -240562108 + MIR SINE MIR 33 198 -64 580 298 83 9 chr1 41631560 41631778 -240561886 - MLT1J2 LTR MaLR 0 450 217 231 250 19 0 chr1 41632124 41632176 -240561488 + (CTA)n Simple_repeat Simple_repeat 2 54 0 211 218 55 0 chr1 41632192 41632247 -240561417 + MIR SINE MIR 134 191 -71 2380 80 7 3 chr1 41632356 41632656 -240561008 - AluY SINE Alu -3 308 8 610 308 47 9 chr1 41633312 41633523 -240560141 + MIR SINE MIR 31 249 -13 929 270 46 4 chr1 41633823 41634064 -240559600 - MIR SINE MIR -10 252 2 351 65 0 0 chr1 41635097 41635143 -240558521 + (TTG)n Simple_repeat Simple_repeat 2 47 0 423 296 24 24 chr1 41635294 41635463 -240558201 + CT-rich Low_complexity Low_complexity 2 170 0 210 361 12 0 chr1 41635485 41635568 -240558096 + CT-rich Low_complexity Low_complexity 1 84 0 558 259 3 16 chr1 41635612 41635994 -240557670 + CT-rich Low_complexity Low_complexity 1 376 0 393 312 0 0 chr1 41636326 41636435 -240557229 - MIR3 SINE MIR -18 190 82 478 352 101 28 chr1 41638349 41638658 -240555006 + L3 LINE CR1 919 1265 -312 813 243 6 6 chr1 41638658 41638835 -240554829 - MER5B DNA MER1_type -1 177 1 478 352 101 28 chr1 41638835 41638920 -240554744 + L3 LINE CR1 1265 1342 -235 184 348 51 17 chr1 41639537 41639655 -240554009 - MIR SINE MIR -54 208 87 237 277 0 0 chr1 41640097 41640162 -240553502 + (CA)n Simple_repeat Simple_repeat 2 66 0 479 181 69 9 chr1 41640465 41640581 -240553083 - MIR SINE MIR -66 196 74 524 270 124 17 chr1 41640683 41640861 -240552803 + L2 LINE L2 3081 3277 -36 272 269 37 37 chr1 41641583 41641691 -240551973 + L2 LINE L2 3152 3259 -13 225 0 0 0 chr1 41641691 41641716 -240551948 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 320 314 17 8 chr1 41641722 41641840 -240551824 + MIR SINE MIR 27 145 -63 198 333 26 44 chr1 41642441 41642555 -240551109 - MIR SINE MIR 0 262 151 1555 176 62 79 chr1 41642581 41643127 -240550537 + MLT1E LTR MaLR 88 593 0 466 317 7 7 chr1 41643127 41643272 -240550392 - MIR SINE MIR -109 153 9 284 263 26 0 chr1 41643838 41643914 -240549750 + MIR SINE MIR 33 110 -152 514 184 0 51 chr1 41643914 41644012 -240549652 - 5S rRNA rRNA -28 93 1 202 167 28 0 chr1 41644014 41644050 -240549614 + MIR SINE MIR 117 153 -109 229 192 279 0 chr1 41644208 41644312 -240549352 - MER104 DNA Tc2 -47 133 1 207 121 0 0 chr1 41644366 41644399 -240549265 + L2 LINE L2 3239 3271 -1 330 300 30 0 chr1 41644784 41644884 -240548780 + MIR SINE MIR 110 212 -50 476 294 156 8 chr1 41646804 41647189 -240546475 + L2 LINE L2 2632 3067 -246 * 516 220 89 21 chr1 41647182 41647362 -240546302 - MIR SINE MIR -12 250 2 343 274 12 79 chr1 41647414 41647578 -240546086 + L2 LINE L2 3159 3311 -2 1980 128 0 60 chr1 41647759 41648078 -240545586 + AluSx SINE Alu 1 300 -12 3250 77 6 54 chr1 41648326 41648847 -240544817 + L1PB1 LINE L1 5656 6151 0 599 299 27 5 chr1 41648950 41649134 -240544530 + L3 LINE CR1 918 1105 -472 2324 113 0 0 chr1 41649146 41649438 -240544226 - AluSx SINE Alu -20 292 1 297 212 106 12 chr1 41649756 41649841 -240543823 + MER5A DNA MER1_type 14 106 -83 2306 101 0 3 chr1 41650156 41650453 -240543211 + AluSq SINE Alu 1 296 -17 180 0 0 0 chr1 41650545 41650565 -240543099 + (TG)n Simple_repeat Simple_repeat 1 20 0 224 301 226 7 chr1 41651385 41651531 -240542133 + MIR SINE MIR 21 198 -64 214 308 42 56 chr1 41652181 41652324 -240541340 + MIR SINE MIR 96 236 -26 672 214 148 0 chr1 41652380 41652562 -240541102 + MIR SINE MIR 40 248 -14 353 286 38 0 chr1 41653250 41653355 -240540309 + MIR SINE MIR 36 144 -64 317 256 0 24 chr1 41653529 41653611 -240540053 + MIR SINE MIR 35 114 -148 206 178 0 44 chr1 41654407 41654452 -240539212 + G-rich Low_complexity Low_complexity 5 47 0 1347 178 54 94 chr1 41655903 41656308 -240537356 - MLT1B LTR MaLR 0 390 2 616 293 65 32 chr1 41656347 41656593 -240537071 - MIR SINE MIR -4 258 5 296 306 72 9 chr1 41656837 41656948 -240536716 - MIR SINE MIR -8 254 137 1506 164 120 18 chr1 41657027 41657302 -240536362 - AluJo SINE Alu -8 304 2 1010 270 112 28 chr1 41657349 41657786 -240535878 - L2 LINE L2 -7 3306 2833 241 273 26 13 chr1 41657841 41657918 -240535746 - L3b LINE CR1 -203 1380 1303 248 216 0 0 chr1 41658480 41658531 -240535133 - L2 LINE L2 0 3313 3263 1042 287 70 54 chr1 41658553 41659068 -240534596 - LTR33A LTR ERVL 0 523 1 1061 247 132 37 chr1 41659713 41660146 -240533518 + MLT1J LTR MaLR 38 511 0 625 283 12 0 chr1 41660169 41660342 -240533322 - MIR SINE MIR -56 206 32 1085 251 143 16 chr1 41660866 41661463 -240532201 + L2 LINE L2 2636 3297 -16 453 108 11 21 chr1 41661463 41661556 -240532108 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 223 275 0 22 chr1 41661724 41661815 -240531849 + G-rich Low_complexity Low_complexity 1 89 0 226 347 6 29 chr1 41661914 41662098 -240531566 + GA-rich Low_complexity Low_complexity 2 304 0 211 189 0 0 chr1 41662128 41662165 -240531499 + G-rich Low_complexity Low_complexity 1 37 0 229 257 158 26 chr1 41662170 41662322 -240531342 + L3b LINE CR1 1254 1425 -158 410 302 42 37 chr1 41662933 41663148 -240530516 + L1ME4a LINE L1 5304 5519 -2289 388 282 107 0 chr1 41663603 41663734 -240529930 + L1ME4a LINE L1 5475 5619 -502 2736 253 45 20 chr1 41664266 41665097 -240528567 - L1ME3 LINE L1 -1 6161 5311 807 279 106 16 chr1 41665053 41665545 -240528119 + L1ME4a LINE L1 5586 6121 0 * 491 171 114 29 chr1 41665891 41665996 -240527668 + L2 LINE L2 3200 3313 0 513 306 19 19 chr1 41666008 41666217 -240527447 - MARNA DNA Mariner -22 564 356 198 326 156 21 chr1 41666467 41666608 -240527056 + L2 LINE L2 2720 2879 -435 293 259 82 12 chr1 41666790 41666875 -240526789 - MER5B DNA MER1_type 0 178 88 1008 264 99 8 chr1 41666912 41667264 -240526400 + MLT1J1 LTR MaLR 63 446 0 561 195 70 16 chr1 41667264 41667392 -240526272 - MER5B DNA MER1_type -40 138 4 524 284 170 23 chr1 41668420 41668726 -240524938 + L2 LINE L2 2936 3286 -27 821 239 45 61 chr1 41668728 41669111 -240524553 + MLT1H LTR MaLR 39 533 -16 534 259 111 12 chr1 41669589 41669751 -240523913 - MIR3 SINE MIR -11 197 20 201 214 24 0 chr1 41669998 41670040 -240523624 - L2 LINE L2 -19 3253 3211 208 330 9 0 chr1 41670278 41670387 -240523277 + CT-rich Low_complexity Low_complexity 1 110 0 196 250 33 17 chr1 41670798 41670858 -240522806 + MIR SINE MIR 77 137 -71 199 324 28 14 chr1 41671691 41671762 -240521902 - MIR SINE MIR -163 99 28 323 236 56 22 chr1 41672023 41672112 -240521552 + MIR SINE MIR 45 136 -126 229 269 15 0 chr1 41672112 41672179 -240521485 + MIR SINE MIR 100 167 -95 524 286 19 0 chr1 41673309 41673463 -240520201 + MIR SINE MIR 77 233 -29 2209 98 3 48 chr1 41673475 41673790 -240519874 - AluSq SINE Alu -12 301 1 370 331 69 59 chr1 41673841 41674161 -240519503 - L2 LINE L2 -36 3236 2914 187 209 47 0 chr1 41674271 41674314 -240519350 - L2 LINE L2 -569 2745 2701 207 167 0 0 chr1 41674603 41674645 -240519019 + GA-rich Low_complexity Low_complexity 2 43 0 395 244 24 24 chr1 41674946 41675073 -240518591 + MIR SINE MIR 21 147 -61 243 157 157 0 chr1 41675683 41675734 -240517930 + MER5A DNA MER1_type 41 99 -90 * 355 290 71 41 chr1 41675698 41675867 -240517797 + MIR SINE MIR 15 188 -74 280 229 124 38 chr1 41676768 41676873 -240516791 - MIR SINE MIR -72 136 23 415 303 63 69 chr1 41676981 41677459 -240516205 + L2 LINE L2 2831 3305 -8 * 1452 257 217 3 chr1 41677431 41678182 -240515482 - L2 LINE L2 -1 3312 2420 265 231 15 0 chr1 41678183 41678248 -240515416 + MLT1K LTR MaLR 500 565 -23 399 328 85 0 chr1 41678560 41678737 -240514927 - MIR SINE MIR -24 238 47 245 283 33 0 chr1 41678797 41678889 -240514775 + MIR3 SINE MIR 72 166 -42 240 289 0 0 chr1 41679743 41679795 -240513869 + L2 LINE L2 3262 3313 0 375 132 0 0 chr1 41679958 41680026 -240513638 + (TC)n Simple_repeat Simple_repeat 1 68 0 565 291 15 34 chr1 41680442 41680648 -240513016 - L2 LINE L2 0 3313 3112 706 295 119 38 chr1 41680649 41681019 -240512645 + LTR33 LTR ERVL 1 400 -121 239 245 0 0 chr1 41681585 41681638 -240512026 - MIR SINE MIR -133 129 77 642 300 170 8 chr1 41681651 41682051 -240511613 - LTR33 LTR ERVL -53 468 4 342 296 15 15 chr1 41683033 41683165 -240510499 - MIR SINE MIR -119 143 12 234 320 0 0 chr1 41683730 41683805 -240509859 - MIR SINE MIR -89 119 45 375 284 142 8 chr1 41683929 41684063 -240509601 + MIR SINE MIR 60 211 -51 432 276 135 12 chr1 41684400 41684563 -240509101 + MIR SINE MIR 80 262 0 202 391 36 7 chr1 41684591 41684729 -240508935 + MIR SINE MIR 106 247 -15 250 290 32 0 chr1 41684836 41684898 -240508766 + L3 LINE CR1 1419 1482 -95 497 320 17 17 chr1 41686248 41686429 -240507235 - MIR SINE MIR -65 197 17 267 239 94 17 chr1 41686641 41686758 -240506906 - L2 LINE L2 -22 3250 3125 436 238 12 62 chr1 41686996 41687156 -240506508 + GA-rich Low_complexity Low_complexity 1 152 0 184 372 32 0 chr1 41688630 41688724 -240504940 + MIR3 SINE MIR 82 178 -30 405 207 35 0 chr1 41689001 41689088 -240504576 - MIR SINE MIR -80 182 93 * 916 274 116 25 chr1 41689086 41689841 -240503823 + L2 LINE L2 2443 3270 -2 200 205 0 0 chr1 41689842 41689881 -240503783 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 276 77 0 0 chr1 41690134 41690173 -240503491 + (CA)n Simple_repeat Simple_repeat 1 39 0 2188 90 21 0 chr1 41690574 41690863 -240502801 - AluY SINE Alu -13 298 4 252 0 0 0 chr1 41691684 41691712 -240501952 + (CA)n Simple_repeat Simple_repeat 1 28 0 966 137 0 0 chr1 41692357 41692488 -240501176 + FLAM_C SINE Alu 1 131 -12 534 130 28 0 chr1 41693630 41693738 -240499926 + CT-rich Low_complexity Low_complexity 1 111 0 281 315 90 39 chr1 41693803 41693981 -240499683 + L2 LINE L2 2684 2870 -444 234 371 78 31 chr1 41694034 41694328 -240499336 + L2 LINE L2 2999 3306 -7 189 0 0 0 chr1 41694328 41694349 -240499315 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 620 300 94 13 chr1 41695588 41695821 -240497843 + MIR SINE MIR 1 252 -10 471 228 69 0 chr1 41695866 41695967 -240497697 + L2 LINE L2 3203 3310 -3 329 196 0 0 chr1 41695994 41696050 -240497614 + L2 LINE L2 3254 3309 -4 575 288 93 13 chr1 41696468 41696704 -240496960 + MIR SINE MIR 8 262 0 310 367 9 9 chr1 41696908 41697017 -240496647 - MIR SINE MIR -66 142 34 379 392 13 0 chr1 41697501 41697654 -240496010 + MIR SINE MIR 11 165 -97 245 242 0 0 chr1 41698718 41698780 -240494884 + (TG)n Simple_repeat Simple_repeat 2 63 0 253 241 12 0 chr1 41698798 41698968 -240494696 + (TG)n Simple_repeat Simple_repeat 2 173 0 282 247 0 0 chr1 41698984 41699146 -240494518 + (TG)n Simple_repeat Simple_repeat 2 163 0 300 53 0 0 chr1 41699253 41699291 -240494373 + (TG)n Simple_repeat Simple_repeat 1 38 0 2952 131 2 12 chr1 41700284 41700774 -240492890 + L1MA4 LINE L1 5536 6020 -280 199 247 82 0 chr1 41701326 41701399 -240492265 - MIR SINE MIR -165 97 19 436 325 63 5 chr1 41701715 41701906 -240491758 - MIR SINE MIR -13 249 48 453 296 64 71 chr1 41702472 41702752 -240490912 + L2 LINE L2 2993 3270 -2 329 322 0 0 chr1 41702923 41703010 -240490654 + L1MC4 LINE L1 6617 6703 -1339 525 259 24 30 chr1 41703034 41703200 -240490464 + Charlie8 DNA MER1_type 117 281 -2136 241 284 14 0 chr1 41703188 41703262 -240490402 + Charlie8 DNA MER1_type 2341 2415 -2 * 2345 106 0 3 chr1 41703800 41704103 -240489561 + AluSg SINE Alu 1 302 -8 475 286 51 63 chr1 41704337 41704592 -240489072 - MIR SINE MIR -6 256 5 2494 92 0 0 chr1 41706576 41706882 -240486782 + AluSx SINE Alu 1 306 -6 377 295 86 0 chr1 41706882 41707021 -240486643 - MIR SINE MIR -79 183 33 186 194 28 0 chr1 41707505 41707541 -240486123 + MIR SINE MIR 37 73 -135 919 257 4 42 chr1 41707598 41707817 -240485847 + MIR SINE MIR 8 217 -45 2274 108 0 3 chr1 41707817 41708124 -240485540 + AluSx SINE Alu 1 306 -6 919 257 4 42 chr1 41708124 41708169 -240485495 + MIR SINE MIR 217 262 0 522 301 117 12 chr1 41708477 41708726 -240484938 - L2 LINE L2 -3 3310 3036 41 66 0 0 chr1 41708750 41708826 -240484838 + AT_rich Low_complexity Low_complexity 1 76 0 265 242 0 0 chr1 41708846 41708912 -240484752 - L2 LINE L2 -333 2980 2915 509 306 28 0 chr1 41709472 41709616 -240484048 - MIR SINE MIR -21 241 94 2276 98 0 14 chr1 41709618 41709904 -240483760 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr1 41709904 41709929 -240483735 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 542 274 58 49 chr1 41710095 41710318 -240483346 - MIR SINE MIR -10 252 28 571 221 16 0 chr1 41710374 41710496 -240483168 + MIR3 SINE MIR 33 156 -52 2276 94 0 3 chr1 41710821 41711107 -240482557 - AluSq SINE Alu -19 294 10 225 307 11 34 chr1 41711839 41711927 -240481737 + L2 LINE L2 3227 3312 -1 337 250 74 34 chr1 41712471 41712619 -240481045 + L1ME4a LINE L1 5968 6121 0 258 302 0 12 chr1 41712636 41712722 -240480942 + GA-rich Low_complexity Low_complexity 2 86 0 525 276 20 60 chr1 41713231 41713430 -240480234 + MIR SINE MIR 59 249 -13 180 121 0 61 chr1 41713941 41713974 -240479690 - L3 LINE CR1 -401 1176 1146 183 244 22 0 chr1 41714101 41714146 -240479518 - L2 LINE L2 -1 3271 3226 297 275 189 73 chr1 41714261 41714748 -240478916 + L2 LINE L2 2717 3268 -4 3046 51 3 3 chr1 41714753 41715127 -240478537 + L1PA8A LINE L1 5731 6104 -27 253 164 16 98 chr1 41715128 41715189 -240478475 + L1PA8A LINE L1 6076 6131 0 531 45 0 0 chr1 41715191 41715257 -240478407 + (TA)n Simple_repeat Simple_repeat 2 67 0 473 307 116 16 chr1 41715307 41715558 -240478106 + L1MC2 LINE L1 5387 5662 -459 1947 243 72 33 chr1 41715576 41715613 -240478051 - MLT1E LTR MaLR 0 593 559 1704 156 3 7 chr1 41715613 41715896 -240477768 + AluJb SINE Alu 1 282 -30 234 0 0 0 chr1 41715905 41715931 -240477733 + (CA)n Simple_repeat Simple_repeat 1 26 0 1947 243 72 33 chr1 41715931 41716454 -240477210 - MLT1E LTR MaLR -41 552 1 234 193 0 0 chr1 41716454 41716511 -240477153 + (TG)n Simple_repeat Simple_repeat 1 57 0 275 275 131 64 chr1 41717689 41717925 -240475739 - L2 LINE L2 -208 3064 2813 25 0 0 0 chr1 41718119 41718144 -240475520 + AT_rich Low_complexity Low_complexity 1 25 0 547 280 227 5 chr1 41718186 41718393 -240475271 - MIR SINE MIR -1 261 9 469 304 42 28 chr1 41718416 41718633 -240475031 + L3 LINE CR1 666 885 -692 4556 43 0 7 chr1 41718999 41719557 -240474107 - L1PA5 LINE L1 0 6154 5601 1761 128 4 12 chr1 41719794 41720017 -240473647 + MLT1A1 LTR MaLR 110 332 -33 2403 137 6 0 chr1 41720017 41720381 -240473283 + MER47A DNA MER2_type 1 366 0 1761 128 4 12 chr1 41720381 41720415 -240473249 + MLT1A1 LTR MaLR 332 365 0 457 264 0 0 chr1 41720470 41720580 -240473084 - MIR SINE MIR -3 259 150 569 249 208 41 chr1 41720582 41721012 -240472652 + MLT1J LTR MaLR 3 457 -7 321 286 109 17 chr1 41721012 41721131 -240472533 - MIR SINE MIR -118 144 15 1728 161 19 16 chr1 41721158 41721480 -240472184 + L1MC2 LINE L1 5712 6034 -310 1631 151 82 0 chr1 41721533 41721825 -240471839 + L1MC2 LINE L1 6020 6335 -9 488 170 40 0 chr1 41721909 41722009 -240471655 - MIR SINE MIR -69 193 90 201 222 0 0 chr1 41722400 41722463 -240471201 + (CA)n Simple_repeat Simple_repeat 2 64 0 369 235 196 50 chr1 41723101 41723280 -240470384 + MIR SINE MIR 44 248 -14 704 264 23 6 chr1 41723310 41723484 -240470180 - MIR3 SINE MIR -23 185 9 1386 215 11 0 chr1 41724415 41724536 -240469128 + AluJo SINE Alu 1 119 -193 197 33 33 0 chr1 41724536 41724566 -240469098 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1386 215 11 0 chr1 41724566 41724723 -240468941 + AluJo SINE Alu 119 282 -30 2204 95 3 0 chr1 41725106 41725400 -240468264 + AluSg1 SINE Alu 1 295 -14 431 135 14 0 chr1 41726547 41726621 -240467043 - L1PB1 LINE L1 -125 6026 5952 791 106 0 16 chr1 41726621 41726742 -240466922 + L1PB1 LINE L1 6031 6151 0 935 137 0 0 chr1 41727296 41727442 -240466222 - AluJb SINE Alu -30 282 137 520 267 119 0 chr1 41727963 41728139 -240465525 - MIR SINE MIR -35 227 31 2071 107 4 0 chr1 41728560 41728840 -240464824 + AluSx SINE Alu 1 281 -31 338 0 24 0 chr1 41728843 41728885 -240464779 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1742 151 36 88 chr1 41729175 41729559 -240464105 + THE1B LTR MaLR 1 364 0 880 241 35 65 chr1 41729803 41730093 -240463571 - Charlie8 DNA MER1_type -2135 282 2 267 298 58 68 chr1 41730101 41730292 -240463372 + L3 LINE CR1 1045 1233 -344 685 160 8 40 chr1 41730318 41730443 -240463221 - L1MC1 LINE L1 -14 6319 6199 926 116 192 62 chr1 41730684 41730908 -240462756 - L1MC1 LINE L1 -141 6192 5940 355 150 17 0 chr1 41730963 41731023 -240462641 - MLT1G1 LTR MaLR 0 595 535 1212 131 5 45 chr1 41731032 41731253 -240462411 + AluJo SINE Alu 89 300 -12 1133 169 5 0 chr1 41731259 41731454 -240462210 + L1MB4 LINE L1 5985 6180 0 292 263 175 44 chr1 41731651 41731811 -240461853 - MLT1H LTR MaLR -245 304 162 * 1553 246 57 15 chr1 41731809 41732359 -240461305 - MLT2E LTR ERVL -9 619 1 499 241 68 23 chr1 41732548 41732681 -240460983 + MIR SINE MIR 37 175 -87 266 314 132 19 chr1 41732839 41732998 -240460666 + L3 LINE CR1 1334 1510 -67 1189 210 83 7 chr1 41733101 41733391 -240460273 + L1ME4a LINE L1 5526 5837 -284 384 223 178 6 chr1 41734257 41734330 -240459334 + L1ME4a LINE L1 5849 5908 -213 333 82 0 0 chr1 41734330 41734379 -240459285 + (CA)n Simple_repeat Simple_repeat 2 50 0 384 223 178 6 chr1 41734379 41734462 -240459202 + L1ME4a LINE L1 5908 6032 -89 473 217 0 8 chr1 41734771 41734891 -240458773 + GA-rich Low_complexity Low_complexity 1 119 0 495 244 194 28 chr1 41735318 41735498 -240458166 - MIR SINE MIR -14 248 39 2229 146 30 6 chr1 41736645 41737009 -240456655 + THE1C LTR MaLR 3 375 0 192 194 0 28 chr1 41737826 41737862 -240455802 + MIR SINE MIR 223 257 -5 415 272 125 0 chr1 41738712 41738848 -240454816 - MIR3 SINE MIR -26 182 30 233 359 119 40 chr1 41739808 41740162 -240453502 - L3 LINE CR1 -338 1239 858 323 283 58 36 chr1 41740539 41740677 -240452987 + MIR SINE MIR 29 169 -93 349 264 72 123 chr1 41740784 41741076 -240452588 + L2 LINE L2 2992 3268 -4 585 269 16 83 chr1 41741176 41741418 -240452246 - MIR SINE MIR 0 262 37 2741 200 34 19 chr1 41741438 41741765 -240451899 - L1MD3 LINE L1 -10 7985 7645 1938 113 7 55 chr1 41741765 41742074 -240451590 - AluSq SINE Alu -19 294 1 2741 200 34 19 chr1 41742074 41742312 -240451352 - L1MD3 LINE L1 -350 7645 7412 241 298 43 78 chr1 41742933 41743074 -240450590 + L2 LINE L2 3128 3263 -9 306 343 36 14 chr1 41743421 41743561 -240450103 + L3 LINE CR1 940 1082 -495 319 344 56 14 chr1 41743610 41743848 -240449816 - L2 LINE L2 -275 2997 2749 426 20 0 0 chr1 41743905 41743956 -240449708 + (CA)n Simple_repeat Simple_repeat 2 52 0 267 31 0 0 chr1 41743955 41743987 -240449677 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 529 287 64 40 chr1 41744512 41744714 -240448950 - LTR67 LTR ERVL -254 303 97 2797 86 47 5 chr1 41744773 41745157 -240448507 + MLT2A1 LTR ERVL 1 400 -44 277 82 115 33 chr1 41745215 41745266 -240448398 + Ricksha DNA DNA 847 902 -1144 46122 66 4 6 chr1 41745266 41750932 -240442732 + HERVL-A1-A1 LTR ERVL 1 5654 0 2895 78 54 60 chr1 41750932 41751379 -240442285 + MLT2A1 LTR ERVL 1 444 0 299 283 183 29 chr1 41752942 41753107 -240440557 + MIR SINE MIR 3 192 -70 785 165 0 0 chr1 41753699 41753814 -240439850 + FLAM_C SINE Alu 2 116 -27 909 181 118 13 chr1 41754264 41754502 -240439162 + L1ME2 LINE L1 5742 6004 -160 1061 178 49 4 chr1 41754520 41754759 -240438905 + MER33 DNA MER1_type 1 212 -80 39350 80 5 10 chr1 41754762 41760936 -240432728 - L1PA6 LINE L1 0 6154 11 480 134 25 67 chr1 41760948 41760976 -240432688 + MER33 DNA MER1_type 250 278 -2346 1962 143 0 10 chr1 41760976 41761283 -240432381 - AluSg SINE Alu -6 304 1 480 134 25 67 chr1 41761283 41761373 -240432291 + MER33 DNA MER1_type 278 363 0 437 171 90 54 chr1 41761376 41761487 -240432177 + L1ME2 LINE L1 6048 6162 -2 337 237 11 54 chr1 41761487 41761580 -240432084 - L2 LINE L2 -14 3258 3170 248 160 20 20 chr1 41762677 41762727 -240430937 - L2 LINE L2 -16 3256 3207 475 298 0 21 chr1 41762751 41762892 -240430772 + L2 LINE L2 2650 2787 -527 229 167 0 24 chr1 41762901 41762943 -240430721 - MLT1H LTR MaLR -1 548 508 241 316 181 30 chr1 41763053 41763290 -240430374 - MLT1H LTR MaLR -270 279 7 884 325 44 41 chr1 41763319 41763731 -240429933 + L2 LINE L2 2837 3249 -23 194 286 107 36 chr1 41763746 41763830 -240429834 - L2 LINE L2 -239 3033 2944 994 152 5 101 chr1 41763837 41763918 -240429746 + MER5A DNA MER1_type 1 88 -101 2156 121 0 0 chr1 41763918 41764202 -240429462 + AluSg SINE Alu 1 447 0 1120 98 0 0 chr1 41764202 41764365 -240429299 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 994 152 5 101 chr1 41764365 41764489 -240429175 + MER5A DNA MER1_type 88 189 0 891 186 108 20 chr1 41764497 41764701 -240428963 - MER58A DNA MER1_type 0 224 3 2394 84 0 26 chr1 41764737 41764909 -240428755 - AluSx SINE Alu -11 301 139 2333 109 0 3 chr1 41764909 41765220 -240428444 - AluSq SINE Alu -3 310 1 2394 84 0 26 chr1 41765220 41765356 -240428308 - AluSx SINE Alu -173 139 1 2317 88 0 14 chr1 41765368 41765665 -240427999 - AluSx SINE Alu -14 298 6 531 264 104 0 chr1 41765830 41765993 -240427671 - MIR SINE MIR -6 256 77 1740 159 55 7 chr1 41766204 41766494 -240427170 + AluJo SINE Alu 1 304 -8 2383 91 3 0 chr1 41768076 41768372 -240425292 - AluSp SINE Alu -16 297 1 271 206 298 15 chr1 41768637 41768768 -240424896 + MIR3 SINE MIR 11 178 -30 1090 177 10 20 chr1 41769136 41769339 -240424325 - MIR SINE MIR -12 250 50 256 232 36 0 chr1 41770456 41770512 -240423152 + L2 LINE L2 3256 3313 0 271 315 180 9 chr1 41770522 41770633 -240423031 + L3 LINE CR1 1298 1427 -150 764 242 82 46 chr1 41770633 41770852 -240422812 - MIR SINE MIR -10 252 26 203 268 27 71 chr1 41770861 41770973 -240422691 + L3 LINE CR1 1430 1536 -41 292 325 125 12 chr1 41772185 41772345 -240421319 + MIR SINE MIR 13 190 -72 190 185 92 62 chr1 41772311 41772376 -240421288 - L2 LINE L2 -560 2754 2688 * 2088 140 3 0 chr1 41772379 41772679 -240420985 + AluJo SINE Alu 3 303 -9 1028 199 12 49 chr1 41772818 41773064 -240420600 + MIR SINE MIR 5 241 -21 282 250 15 15 chr1 41773084 41773152 -240420512 + L2 LINE L2 3244 3311 -2 181 274 98 0 chr1 41773155 41773206 -240420458 + L2 LINE L2 3200 3255 -17 699 276 136 5 chr1 41774043 41774264 -240419400 + MIR SINE MIR 13 262 0 2399 106 0 0 chr1 41776635 41776937 -240416727 + AluSx SINE Alu 2 303 -9 200 260 0 0 chr1 41777455 41777505 -240416159 + (TG)n Simple_repeat Simple_repeat 1 50 0 468 245 28 42 chr1 41777703 41777846 -240415818 + MIR3 SINE MIR 35 175 -33 842 129 129 0 chr1 41777993 41778125 -240415539 + AluSg/x SINE Alu 149 297 -15 1162 173 26 26 chr1 41778178 41778404 -240415260 + L1MB5 LINE L1 5941 6166 -8 1121 113 0 0 chr1 41778408 41778559 -240415105 - AluSc SINE Alu -7 302 152 223 217 109 33 chr1 41779146 41779238 -240414426 + L2 LINE L2 3124 3222 -50 925 311 8 0 chr1 41779265 41779509 -240414155 + MIR SINE MIR 17 262 0 410 231 11 0 chr1 41779588 41779679 -240413985 - MIR SINE MIR -62 146 55 403 132 88 79 chr1 41780058 41780172 -240413492 + L2 LINE L2 3181 3295 -18 201 329 0 37 chr1 41781133 41781215 -240412449 + MIR SINE MIR 66 144 -64 407 294 73 7 chr1 41781262 41781398 -240412266 - MIR3 SINE MIR -62 146 2 189 219 0 0 chr1 41781398 41781429 -240412235 - L2 LINE L2 -18 3254 3224 951 130 8 0 chr1 41782031 41782162 -240411502 + FLAM_C SINE Alu 2 133 -10 1869 160 0 4 chr1 41782169 41782450 -240411214 + AluJb SINE Alu 1 280 -32 631 253 81 41 chr1 41782459 41782680 -240410984 - MIR SINE MIR 0 262 33 180 278 229 0 chr1 41782822 41782966 -240410698 + L2 LINE L2 2340 2516 -798 189 282 70 0 chr1 41783169 41783240 -240410424 + MIR SINE MIR 63 138 -124 210 352 145 19 chr1 41783431 41783590 -240410074 - MIR SINE MIR 0 262 84 496 222 8 26 chr1 41783716 41783833 -240409831 + MIR SINE MIR 105 219 -43 2185 124 56 12 chr1 41784023 41784346 -240409318 - MER1B DNA MER1_type 0 337 1 2588 13 13 3 chr1 41785437 41785740 -240407924 + L1PA3 LINE L1 5850 6155 0 739 200 58 37 chr1 41786057 41786247 -240407417 + MER117 DNA MER1_type 4 197 0 1476 149 12 40 chr1 41786895 41787144 -240406520 + AluJo SINE Alu 59 300 -12 1754 179 24 3 chr1 41787557 41787848 -240405816 + AluJo SINE Alu 1 297 -15 485 255 65 38 chr1 41787915 41788099 -240405565 + L2 LINE L2 3120 3308 -5 261 139 0 0 chr1 41788111 41788154 -240405510 + (TGGA)n Simple_repeat Simple_repeat 1 43 0 814 212 62 17 chr1 41788286 41788465 -240405199 + MIR SINE MIR 63 249 -13 249 69 35 35 chr1 41788654 41788712 -240404952 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 590 242 15 8 chr1 41789769 41789901 -240403763 + MIR3 SINE MIR 30 162 -46 2664 147 29 2 chr1 41791273 41791687 -240401977 + MSTB LTR MaLR 2 426 0 254 261 11 0 chr1 41791749 41791824 -240401840 + MIR SINE MIR 59 137 -71 376 289 0 26 chr1 41792072 41792186 -240401478 - MIR SINE MIR -145 117 7 355 274 57 51 chr1 41792527 41792684 -240400980 - MER5A DNA MER1_type 0 189 32 493 281 0 44 chr1 41792818 41792953 -240400711 - MIR3 SINE MIR -41 167 39 654 154 34 69 chr1 41793460 41793635 -240400029 + MER3 DNA MER1_type 1 122 -87 892 139 29 46 chr1 41793635 41793786 -240399878 - MIR SINE MIR -81 181 32 1880 161 55 0 chr1 41793786 41794078 -240399586 - AluJb SINE Alu -4 308 1 892 139 29 46 chr1 41794078 41794099 -240399565 - MIR SINE MIR -230 32 12 2332 110 3 0 chr1 41794927 41795236 -240398428 + AluSx SINE Alu 1 310 -2 713 289 138 17 chr1 41796150 41796448 -240397216 - L2 LINE L2 0 3313 2980 3887 118 34 114 chr1 41796448 41796684 -240396980 + Tigger3b DNA MER2_type 1 254 -2774 2316 103 3 0 chr1 41796684 41796985 -240396679 + AluSq SINE Alu 5 306 -7 3887 118 34 114 chr1 41796985 41797649 -240396015 + Tigger3b DNA MER2_type 254 829 -402 2199 120 0 16 chr1 41797649 41797966 -240395698 + AluSx SINE Alu 1 312 0 411 281 59 26 chr1 41797996 41798149 -240395515 - L2 LINE L2 -317 2996 2839 494 204 51 98 chr1 41798163 41798368 -240395296 - MIR SINE MIR -61 147 7 749 245 33 27 chr1 41799039 41799223 -240394441 - MIR SINE MIR -58 204 20 2362 108 0 0 chr1 41799360 41799667 -240393997 + AluSc SINE Alu 1 307 -2 245 313 31 23 chr1 41799667 41799785 -240393879 + GA-rich Low_complexity Low_complexity 13 134 0 2182 142 0 0 chr1 41799939 41800241 -240393423 - AluJb SINE Alu -10 302 1 327 244 24 83 chr1 41800297 41800465 -240393199 + L2 LINE L2 2904 3061 -211 1114 233 54 24 chr1 41800577 41800908 -240392756 + MER2 DNA MER2_type 4 344 0 2157 91 37 14 chr1 41800970 41801267 -240392397 + AluSx SINE Alu 1 304 -8 287 361 60 17 chr1 41801415 41801717 -240391947 - L1MC/D LINE L1 -401 5720 5449 250 128 43 21 chr1 41801717 41801764 -240391900 + MIR SINE MIR 153 200 -62 394 323 18 48 chr1 41801899 41802066 -240391598 + MIR SINE MIR 47 208 -54 1306 132 148 23 chr1 41802239 41802565 -240391099 - MSTA LTR MaLR 0 428 30 213 65 0 0 chr1 41852569 41852600 -240341064 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 28 48 0 0 chr1 41852877 41852919 -240340745 + GC_rich Low_complexity Low_complexity 1 42 0 249 83 0 0 chr1 41853763 41853799 -240339865 + (TG)n Simple_repeat Simple_repeat 1 36 0 353 303 78 43 chr1 41853943 41854174 -240339490 - L1ME3A LINE L1 -6 6164 5926 468 246 91 30 chr1 41854209 41854512 -240339152 - L1ME3A LINE L1 -214 5950 5630 188 271 34 0 chr1 41855049 41855108 -240338556 - MIR SINE MIR -1 261 201 232 301 74 61 chr1 41855110 41855339 -240338325 + L2 LINE L2 2923 3154 -118 2370 69 0 53 chr1 41856011 41856331 -240337333 - AluY SINE Alu -8 303 1 2078 190 57 124 chr1 41856510 41856753 -240336911 + L1MD3 LINE L1 6763 7021 -1021 1879 141 17 27 chr1 41856753 41857052 -240336612 - AluJo SINE Alu -16 296 1 2078 190 57 124 chr1 41857052 41857148 -240336516 + L1MD3 LINE L1 7021 7122 -920 316 204 11 80 chr1 41857148 41857236 -240336428 + MLT1F1 LTR MaLR 44 125 -442 2078 190 57 124 chr1 41857236 41857865 -240335799 + L1MD3 LINE L1 7122 7791 -251 1772 104 25 12 chr1 41857865 41858144 -240335520 + AluSx SINE Alu 44 312 0 2078 190 57 124 chr1 41858144 41858172 -240335492 + L1MD3 LINE L1 7791 7819 -223 300 111 0 0 chr1 41858172 41858217 -240335447 + (TA)n Simple_repeat Simple_repeat 1 45 0 2078 190 57 124 chr1 41858217 41858350 -240335314 + L1MD3 LINE L1 7819 8037 -5 23 54 0 0 chr1 41858357 41858394 -240335270 + AT_rich Low_complexity Low_complexity 1 37 0 398 271 34 90 chr1 41858601 41858662 -240335002 - MIR3 SINE MIR 0 208 145 2259 126 0 13 chr1 41858662 41858972 -240334692 - AluSx SINE Alu -6 306 1 398 271 34 90 chr1 41858972 41859087 -240334577 - MIR3 SINE MIR -63 145 42 270 242 164 0 chr1 41859666 41859794 -240333870 + L2 LINE L2 3121 3269 -3 2184 108 0 56 chr1 41860369 41860693 -240332971 - AluSg SINE Alu -2 308 3 2005 163 0 3 chr1 41860709 41861015 -240332649 - AluSx SINE Alu -7 305 1 493 266 166 69 chr1 41861015 41861334 -240332330 + MLT1K LTR MaLR 170 519 -69 249 300 56 22 chr1 41861496 41861586 -240332078 - MIR3 SINE MIR -45 163 71 1945 128 0 76 chr1 41861618 41861946 -240331718 - AluSx SINE Alu -9 303 1 336 310 46 29 chr1 41862066 41862225 -240331439 - MIR3 SINE MIR -62 146 1 402 216 198 0 chr1 41862583 41862699 -240330965 - MER91C DNA MER1_type 0 140 2 2187 118 0 0 chr1 41863147 41863427 -240330237 + AluSq SINE Alu 1 280 -33 2422 75 3 0 chr1 41863584 41863877 -240329787 - AluY SINE Alu -17 294 1 234 297 117 8 chr1 41866414 41866542 -240327122 - L3 LINE CR1 -43 1534 1393 186 307 68 11 chr1 41867005 41867093 -240326571 - L2 LINE L2 -330 2942 2850 688 211 0 0 chr1 41867795 41867928 -240325736 + FLAM_A SINE Alu 1 133 0 1853 162 78 50 chr1 41868915 41868957 -240324707 + MSTD LTR MaLR 3 42 -354 2264 121 28 6 chr1 41868957 41869313 -240324351 + THE1B LTR MaLR 1 364 0 1853 162 78 50 chr1 41869313 41869446 -240324218 + MSTD LTR MaLR 42 170 -226 2472 91 0 0 chr1 41869446 41869743 -240323921 + AluSg SINE Alu 1 297 -13 1853 162 78 50 chr1 41869743 41869949 -240323715 + MSTD LTR MaLR 170 396 0 214 250 17 0 chr1 41870075 41870135 -240323529 - MIR SINE MIR -30 232 172 3214 151 45 10 chr1 41870346 41870947 -240322717 + LTR26E LTR ERV1 1 622 0 757 264 119 3 chr1 41871125 41871428 -240322236 + L2 LINE L2 2849 3186 -127 2040 217 140 70 chr1 41871448 41872161 -240321503 + MER21B LTR ERV1 40 802 -61 315 339 31 0 chr1 41872171 41872298 -240321366 + L2 LINE L2 3183 3313 0 314 207 198 36 chr1 41872724 41872835 -240320829 + L2 LINE L2 3182 3310 -3 2303 101 7 3 chr1 41873092 41873388 -240320276 - AluSg SINE Alu -13 297 1 36 0 0 0 chr1 41873390 41873426 -240320238 + AT_rich Low_complexity Low_complexity 1 36 0 2300 97 16 3 chr1 41876026 41876334 -240317330 + AluSx SINE Alu 1 312 0 646 297 57 85 chr1 41876589 41877340 -240316324 + HAL1 LINE L1 1 730 -1777 2207 131 0 0 chr1 41877352 41877650 -240316014 + AluSx SINE Alu 1 298 -14 246 215 52 148 chr1 41877676 41877760 -240315904 + HAL1 LINE L1 743 811 -1696 1750 193 0 7 chr1 41877760 41878055 -240315609 - AluJo SINE Alu -19 293 1 246 215 52 148 chr1 41878055 41878105 -240315559 + HAL1 LINE L1 811 864 -1643 575 88 0 78 chr1 41878120 41878222 -240315442 + AluJb SINE Alu 212 305 -7 800 263 206 50 chr1 41878245 41878461 -240315203 + HAL1 LINE L1 899 1080 -1427 2420 81 3 0 chr1 41878461 41878757 -240314907 + AluSp SINE Alu 1 297 -16 800 263 206 50 chr1 41878757 41878811 -240314853 + HAL1 LINE L1 1080 1124 -1383 2506 84 0 3 chr1 41878811 41879121 -240314543 + AluSc SINE Alu 1 309 0 800 263 206 50 chr1 41879121 41879329 -240314335 + HAL1 LINE L1 1124 1453 -1054 1055 165 0 29 chr1 41879335 41879505 -240314159 + FRAM SINE Alu 1 157 -19 1165 264 188 25 chr1 41879512 41880102 -240313562 + HAL1 LINE L1 1470 2155 -352 662 68 11 0 chr1 41880102 41880190 -240313474 + MER72 LTR ERV1 606 694 -28 367 254 107 78 chr1 41880301 41880506 -240313158 + HAL1 LINE L1 2250 2460 -47 217 238 0 48 chr1 41880557 41880620 -240313044 - L2 LINE L2 -246 3067 3008 2402 76 10 10 chr1 41880855 41881158 -240312506 - AluSg SINE Alu -7 303 1 1155 131 0 0 chr1 41881163 41881323 -240312341 - FRAM SINE Alu -19 157 1 525 354 94 0 chr1 41884954 41885177 -240308487 + MIR SINE MIR 9 252 -10 1852 138 7 27 chr1 41885305 41885602 -240308062 - AluJo SINE Alu -21 291 1 1297 161 42 113 chr1 41885610 41885946 -240307718 - AluJo SINE Alu 0 312 1 248 130 0 74 chr1 41885946 41886000 -240307664 - FRAM SINE Alu -167 4294967295 1 467 198 69 0 chr1 41886149 41886250 -240307414 + MIR SINE MIR 37 144 -118 2334 90 0 32 chr1 41886464 41886637 -240307027 - AluSg SINE Alu -8 302 142 2070 72 28 0 chr1 41886637 41886888 -240306776 - AluSq SINE Alu -45 268 11 2334 90 0 32 chr1 41886888 41887026 -240306638 - AluSg SINE Alu -168 142 1 381 259 0 0 chr1 41887026 41887107 -240306557 - MER94 DNA DNA -53 81 1 392 135 16 48 chr1 41888048 41888174 -240305490 + CT-rich Low_complexity Low_complexity 3 124 0 225 277 52 87 chr1 41888776 41889007 -240304657 - L2 LINE L2 -23 3249 3027 2587 72 0 0 chr1 41889488 41889795 -240303869 - AluY SINE Alu -4 307 1 246 240 51 13 chr1 41890444 41890547 -240303117 - MIR SINE MIR -88 120 4 1948 150 7 7 chr1 41891475 41891775 -240301889 + AluJb SINE Alu 2 301 -11 456 291 385 8 chr1 41891916 41892513 -240301151 - L3 LINE CR1 -112 1465 644 454 244 0 35 chr1 41892616 41892731 -240300933 - MIR SINE MIR -28 234 124 2440 106 0 0 chr1 41893206 41893517 -240300147 + AluSx SINE Alu 1 311 -1 440 266 71 7 chr1 41893656 41893810 -240299854 + MER69A DNA AcHobo 1 164 -13 293 310 40 10 chr1 41893815 41893915 -240299749 - MIR SINE MIR -110 152 50 1142 89 204 0 chr1 41893921 41894025 -240299639 + MER30 DNA MER1_type 1 82 -148 198 103 0 0 chr1 41894025 41894054 -240299610 + (CA)n Simple_repeat Simple_repeat 2 30 0 1142 89 204 0 chr1 41894054 41894140 -240299524 + MER30 DNA MER1_type 82 230 0 2301 85 0 33 chr1 41894191 41894498 -240299166 - AluY SINE Alu -14 297 1 2211 112 3 0 chr1 41894498 41894792 -240298872 - AluY SINE Alu -16 295 1 2280 126 3 0 chr1 41894914 41895224 -240298440 - AluSp SINE Alu -1 312 2 2131 147 3 0 chr1 41895342 41895641 -240298023 + AluJb SINE Alu 11 310 -2 1250 278 70 45 chr1 41895708 41895790 -240297874 + L1MC/D LINE L1 5254 5332 -2476 2150 135 0 3 chr1 41895790 41896101 -240297563 + AluSg SINE Alu 1 310 0 1250 278 70 45 chr1 41896101 41896303 -240297361 + L1MC/D LINE L1 5332 5527 -2281 1615 192 24 10 chr1 41896303 41896594 -240297070 - AluJb SINE Alu -17 295 1 1250 278 70 45 chr1 41896594 41896662 -240297002 + L1MC/D LINE L1 5527 5592 -2216 2394 156 79 0 chr1 41896662 41897093 -240296571 + MLT1C LTR MaLR 1 465 -2 1250 278 70 45 chr1 41897093 41897295 -240296369 + L1MC/D LINE L1 5592 5824 -1984 504 288 30 13 chr1 41897275 41897296 -240296368 + L1MC4a LINE L1 5703 5722 -2086 * 2217 96 13 38 chr1 41897296 41897437 -240296227 + AluJb SINE Alu 1 144 -168 2171 137 0 0 chr1 41897437 41897736 -240295928 + AluSx SINE Alu 1 299 -13 2217 96 13 38 chr1 41897736 41897908 -240295756 + AluJb SINE Alu 144 306 -6 504 288 30 13 chr1 41897908 41898119 -240295545 + L1MC4a LINE L1 5722 5939 -1869 2451 83 20 0 chr1 41898427 41898728 -240294936 - AluSp SINE Alu -6 307 1 2416 101 13 0 chr1 41898971 41899279 -240294385 - AluSx SINE Alu 0 312 1 402 216 198 0 chr1 41899727 41899843 -240293821 - MER91C DNA MER1_type -1 139 1 336 310 46 29 chr1 41900201 41900360 -240293304 + MIR3 SINE MIR 1 157 -62 1945 128 0 76 chr1 41900480 41900808 -240292856 + AluSx SINE Alu 1 303 -9 249 300 56 22 chr1 41900840 41900930 -240292734 + MIR3 SINE MIR 71 163 -45 493 266 166 69 chr1 41901092 41901411 -240292253 - MLT1K LTR MaLR -69 519 170 2005 163 0 3 chr1 41901411 41901717 -240291947 + AluSx SINE Alu 1 305 -7 2184 108 0 56 chr1 41901733 41902057 -240291607 + AluSg SINE Alu 3 308 -2 270 242 164 0 chr1 41902632 41902760 -240290904 - L2 LINE L2 -3 3269 3121 398 271 34 90 chr1 41903339 41903454 -240290210 + MIR3 SINE MIR 42 145 -63 2259 126 0 13 chr1 41903454 41903764 -240289900 + AluSx SINE Alu 1 306 -6 398 271 34 90 chr1 41903764 41903825 -240289839 + MIR3 SINE MIR 145 208 0 23 54 0 0 chr1 41904032 41904069 -240289595 + AT_rich Low_complexity Low_complexity 1 37 0 2078 186 61 125 chr1 41904076 41904209 -240289455 - L1MD3 LINE L1 -5 8037 7897 300 111 0 0 chr1 41904209 41904254 -240289410 + (TA)n Simple_repeat Simple_repeat 1 45 0 2078 186 61 125 chr1 41904254 41904282 -240289382 - L1MD3 LINE L1 -145 7897 7869 1772 104 25 12 chr1 41904282 41904561 -240289103 - AluSx SINE Alu 0 312 44 2078 186 61 125 chr1 41904561 41905190 -240288474 - L1MD3 LINE L1 -173 7869 7201 316 204 11 80 chr1 41905190 41905278 -240288386 - MLT1K LTR MaLR -442 125 44 2078 186 61 125 chr1 41905278 41905374 -240288290 - L1MD3 LINE L1 -841 7201 7100 1879 141 17 27 chr1 41905374 41905673 -240287991 + AluJo SINE Alu 1 296 -16 2078 186 61 125 chr1 41905673 41905916 -240287748 - L1MD3 LINE L1 -942 7100 6763 2370 69 0 53 chr1 41906095 41906415 -240287249 + AluY SINE Alu 1 303 -8 232 301 74 61 chr1 41907087 41907316 -240286348 - L2 LINE L2 -118 3154 2923 188 271 34 0 chr1 41907318 41907377 -240286287 + MIR SINE MIR 201 261 -1 468 246 91 30 chr1 41907914 41908217 -240285447 + L1ME3A LINE L1 5630 5950 -214 353 303 78 43 chr1 41908252 41908483 -240285181 + L1ME3A LINE L1 5926 6164 -6 249 83 0 0 chr1 41908627 41908663 -240285001 + (CA)n Simple_repeat Simple_repeat 1 36 0 29 47 0 0 chr1 41909507 41909550 -240284114 + GC_rich Low_complexity Low_complexity 1 43 0 342 91 0 0 chr1 41909828 41909883 -240283781 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 423 317 41 0 chr1 41910328 41910473 -240283191 + MIR SINE MIR 48 198 -64 202 277 0 15 chr1 41911220 41911285 -240282379 - MIR SINE MIR -168 94 31 355 300 9 0 chr1 41913318 41913428 -240280236 - L2 LINE L2 -176 3096 2986 377 290 97 47 chr1 41913730 41913975 -240279689 + MIR SINE MIR 10 262 0 553 295 7 52 chr1 41915822 41916093 -240277571 + MIR SINE MIR 2 260 -2 1845 148 17 24 chr1 41920136 41920434 -240273230 + AluJo SINE Alu 1 296 -16 241 233 68 27 chr1 41921053 41921126 -240272538 + MIR SINE MIR 90 165 -97 275 244 116 0 chr1 41921167 41921253 -240272411 + MIR SINE MIR 35 130 -78 1787 167 3 20 chr1 41923013 41923313 -240270351 - AluJb SINE Alu -17 295 1 1349 125 134 112 chr1 41923315 41923620 -240270044 - AluJo SINE Alu 0 312 1 757 271 68 7 chr1 41923621 41923901 -240269763 + L1MC4a LINE L1 5630 5926 -1882 1617 168 28 99 chr1 41924073 41924230 -240269434 + MLT1A1 LTR MaLR 1 168 -197 973 114 0 0 chr1 41924230 41924362 -240269302 + FLAM_C SINE Alu 2 133 0 1617 168 28 99 chr1 41924362 41924377 -240269287 + MLT1A1 LTR MaLR 168 182 -183 1517 198 17 17 chr1 41924377 41924665 -240268999 + AluJb SINE Alu 1 288 -24 1617 168 28 99 chr1 41924665 41924884 -240268780 + MLT1A1 LTR MaLR 182 365 0 21 0 0 0 chr1 41924893 41924914 -240268750 + AT_rich Low_complexity Low_complexity 1 21 0 254 188 87 14 chr1 41925062 41925131 -240268533 - MER116 DNA Mariner -4 76 3 923 225 0 12 chr1 41925666 41925835 -240267829 - FAM SINE Alu -8 167 1 2187 128 0 7 chr1 41925869 41926174 -240267490 + AluSg SINE Alu 1 303 -7 1480 129 0 0 chr1 41926348 41926550 -240267114 + AluSx SINE Alu 2 203 -109 1519 152 7 45 chr1 41926552 41926821 -240266843 + AluJo SINE Alu 22 280 -32 338 56 0 19 chr1 41926821 41926875 -240266789 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 474 64 39 39 chr1 41927033 41927111 -240266553 - AluJ/FRAM SINE Alu -6 306 229 2498 65 0 0 chr1 41927159 41927452 -240266212 - AluY SINE Alu -18 293 1 189 0 0 0 chr1 41927685 41927706 -240265958 + (A)n Simple_repeat Simple_repeat 1 21 0 702 160 139 21 chr1 41927962 41928106 -240265558 + MER5B DNA MER1_type 2 162 -16 203 262 0 0 chr1 41928744 41928805 -240264859 + A-rich Low_complexity Low_complexity 7 67 0 2386 96 7 3 chr1 41929358 41929661 -240264003 + AluSq SINE Alu 1 304 -9 1883 162 0 10 chr1 41929673 41929981 -240263683 + AluJb SINE Alu 1 305 -7 2329 75 7 0 chr1 41930177 41930505 -240263159 + AluSg SINE Alu 1 330 0 1600 160 78 17 chr1 41930545 41930839 -240262825 + AluJb SINE Alu 1 312 0 25 31 0 0 chr1 41931469 41931501 -240262163 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 41932147 41932183 -240261481 + AT_rich Low_complexity Low_complexity 1 36 0 839 56 0 9 chr1 41932352 41932488 -240261176 - AluYa5/8 SINE Alu 0 308 174 2319 101 0 0 chr1 41932701 41933016 -240260648 - AluSq SINE Alu 0 315 1 1590 153 45 28 chr1 41933527 41933855 -240259809 - AluJo SINE Alu 0 312 1 21 36 0 0 chr1 41933964 41933992 -240259672 + AT_rich Low_complexity Low_complexity 1 28 0 1875 156 14 10 chr1 41933994 41934289 -240259375 + AluJb SINE Alu 1 296 -16 238 171 73 0 chr1 41934372 41934413 -240259251 + L2 LINE L2 3261 3304 -9 1949 123 48 0 chr1 41935149 41935442 -240258222 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr1 41935500 41935528 -240258136 + AT_rich Low_complexity Low_complexity 1 28 0 638 203 8 16 chr1 41937369 41937497 -240256167 - FLAM_A SINE Alu -4 129 3 1941 164 0 7 chr1 41937740 41938044 -240255620 - AluJb SINE Alu -10 302 1 1641 164 22 36 chr1 41938051 41938350 -240255314 - AluJo SINE Alu 0 306 12 1783 159 10 36 chr1 41938498 41938806 -240254858 + AluJo SINE Alu 6 305 -7 1759 149 28 10 chr1 41938806 41939094 -240254570 + AluSx SINE Alu 1 293 -19 2062 132 48 40 chr1 41939103 41939475 -240254189 + THE1C LTR MaLR 1 375 0 2307 115 0 3 chr1 41939613 41939918 -240253746 + AluSq SINE Alu 1 304 -9 243 0 0 0 chr1 41939925 41939952 -240253712 + (CA)n Simple_repeat Simple_repeat 2 28 0 2170 124 0 7 chr1 41940010 41940308 -240253356 - AluSx SINE Alu -16 296 1 1497 101 55 0 chr1 41940504 41940722 -240252942 - MER30 DNA MER1_type 0 230 1 1568 201 63 3 chr1 41940821 41941115 -240252549 + L1M4 LINE L1 4745 5069 -1077 2334 96 0 0 chr1 41941115 41941408 -240252256 + AluSg SINE Alu 1 293 -17 1568 201 63 3 chr1 41941408 41941492 -240252172 + L1M4 LINE L1 5069 5146 -1000 1535 163 74 18 chr1 41941496 41941663 -240252001 - AluJo SINE Alu -8 304 113 216 0 0 0 chr1 41941663 41941687 -240251977 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1535 163 74 18 chr1 41941687 41941802 -240251862 - AluJo SINE Alu -199 113 6 180 0 0 0 chr1 41941815 41941835 -240251829 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 780 124 97 0 chr1 41941835 41941948 -240251716 - FRAM SINE Alu -33 143 20 2292 121 0 0 chr1 41942162 41942468 -240251196 + AluSq SINE Alu 1 306 -7 847 163 143 0 chr1 41942824 41942971 -240250693 + AluSg/x SINE Alu 137 304 -8 1880 159 13 19 chr1 41943395 41943709 -240249955 - AluJo SINE Alu 0 312 1 1681 186 7 0 chr1 41943949 41944218 -240249446 + AluJo SINE Alu 11 281 -31 2110 128 0 10 chr1 41944876 41945199 -240248465 - AluSx SINE Alu 0 312 3 2138 116 3 20 chr1 41945202 41945505 -240248159 - AluSg SINE Alu -12 298 1 2215 120 13 0 chr1 41945506 41945806 -240247858 - AluSx SINE Alu -8 304 1 23 55 0 18 chr1 41945838 41945857 -240247807 + AT_rich Low_complexity Low_complexity 1 19 -35 2364 77 11 0 chr1 41945857 41946144 -240247520 - AluSp SINE Alu -23 290 1 23 55 0 18 chr1 41946144 41946179 -240247485 + AT_rich Low_complexity Low_complexity 19 54 0 818 230 5 20 chr1 41946224 41946420 -240247244 + L1MC4a LINE L1 6711 6903 -905 864 274 111 51 chr1 41946449 41947213 -240246451 + L1MC4 LINE L1 7095 7904 -138 564 241 72 17 chr1 41947209 41947499 -240246165 + L1MD2 LINE L1 5999 6355 -4 * 263 277 31 8 chr1 41947520 41947650 -240246014 + L1MC4 LINE L1 7904 8036 -6 286 200 0 43 chr1 41947661 41947731 -240245933 - MER113 DNA MER1_type? -421 100 34 1673 191 10 17 chr1 41947732 41948031 -240245633 + AluJo SINE Alu 1 297 -15 1431 89 6 0 chr1 41948033 41948213 -240245451 + AluSx SINE Alu 1 181 -131 213 196 71 0 chr1 41948313 41948369 -240245295 - MIR SINE MIR -73 189 130 220 260 0 40 chr1 41949490 41949590 -240244074 + C-rich Low_complexity Low_complexity 3 98 0 26 0 0 0 chr1 41949662 41949688 -240243976 + GC_rich Low_complexity Low_complexity 1 26 0 284 359 115 29 chr1 41950094 41950504 -240243160 + L2 LINE L2 2323 2767 -547 604 290 69 30 chr1 41950521 41950752 -240242912 + MIR SINE MIR 3 242 -20 345 242 157 29 chr1 41950821 41951091 -240242573 - L1MEd LINE L1 -4867 1252 1027 1012 233 47 58 chr1 41951093 41951342 -240242322 - L1M4 LINE L1 -1827 4319 4074 2428 51 7 10 chr1 41951342 41951635 -240242029 + AluY SINE Alu 1 292 -19 1012 233 47 58 chr1 41951635 41951746 -240241918 - L1M4 LINE L1 -2072 4074 3963 2043 85 37 4 chr1 41951783 41952077 -240241587 + AluSg SINE Alu 3 305 0 2307 95 3 3 chr1 41952081 41952376 -240241288 + AluSq SINE Alu 1 295 -18 3366 97 38 75 chr1 41952376 41952555 -240241109 - MER51-int LTR ERV1 -4870 2946 2762 286 26 26 0 chr1 41952555 41952593 -240241071 - U2 snRNA snRNA -149 39 1 3366 97 38 75 chr1 41952593 41953006 -240240658 - MER51-int LTR ERV1 -5054 2762 2340 479 143 83 0 chr1 41953006 41953090 -240240574 - AluSp/q SINE Alu -5 308 218 499 125 34 0 chr1 41953105 41953193 -240240471 - MSTB1-int LTR MaLR -1508 143 53 3344 129 91 142 chr1 41953193 41954684 -240238980 + pTR5 LTR ERV1 743 2606 0 270 161 0 0 chr1 41954684 41954740 -240238924 - MSTB1-int LTR MaLR -1595 56 1 1517 162 251 3 chr1 41954740 41955086 -240238578 - MSTB1 LTR MaLR 0 432 1 1881 149 0 0 chr1 41955145 41955413 -240238251 + AluSx SINE Alu 1 268 -44 2059 116 10 36 chr1 41955425 41955727 -240237937 + AluSq SINE Alu 1 294 -19 2202 77 0 4 chr1 41955730 41956003 -240237661 + AluSp SINE Alu 1 272 -41 698 115 0 0 chr1 41956004 41956100 -240237564 + AluSp/q SINE Alu 205 300 -13 317 246 63 42 chr1 41956106 41956248 -240237416 - L1MEd LINE L1 -5084 1035 891 680 193 9 0 chr1 41956337 41956446 -240237218 + FLAM_A SINE Alu 10 119 -23 336 297 68 8 chr1 41956469 41956587 -240237077 - L1MEd LINE L1 -5286 833 709 2531 76 3 6 chr1 41956647 41956961 -240236703 - AluSp SINE Alu 0 313 1 1391 175 51 35 chr1 41957014 41957329 -240236335 + MER65A LTR ERV1 1 320 -125 359 164 0 15 chr1 41957335 41957402 -240236262 + LTR19C LTR ERV1 619 684 -95 2168 113 7 0 chr1 41957404 41957696 -240235968 + AluSg SINE Alu 1 294 -16 2332 107 7 0 chr1 41957696 41958006 -240235658 + AluSx SINE Alu 1 312 0 604 191 6 32 chr1 41958006 41958163 -240235501 + MER65A LTR ERV1 293 445 0 647 235 68 73 chr1 41958169 41958709 -240234955 + MER65A-int LTR ERV1 11 616 -4255 310 106 0 0 chr1 41958710 41958757 -240234907 + MER41B LTR ERV1 479 525 -110 2140 114 7 10 chr1 41958770 41959090 -240234574 + AluSq SINE Alu 1 313 0 1579 187 13 45 chr1 41959099 41959230 -240234434 + AluJo SINE Alu 1 135 -167 1770 96 31 50 chr1 41959230 41959346 -240234318 - AluSx SINE Alu -57 255 138 2413 84 7 0 chr1 41959346 41959655 -240234009 - AluY SINE Alu 0 311 1 1770 96 31 50 chr1 41959655 41959798 -240233866 - AluSx SINE Alu -174 138 1 1579 187 13 45 chr1 41959798 41959976 -240233688 + AluJo SINE Alu 135 300 -2 1160 257 74 26 chr1 41960005 41960307 -240233357 + MER65A-int LTR ERV1 613 938 -3933 2237 96 6 25 chr1 41960307 41960489 -240233175 - AluSx SINE Alu -2 310 135 2258 110 3 0 chr1 41960489 41960788 -240232876 - AluSp SINE Alu -13 300 1 2237 96 6 25 chr1 41960788 41960919 -240232745 - AluSx SINE Alu -177 135 3 1160 257 74 26 chr1 41960919 41960993 -240232671 + MER65A-int LTR ERV1 938 1007 -3864 2300 110 0 0 chr1 41960995 41961286 -240232378 - AluSx SINE Alu -21 291 1 258 176 27 95 chr1 41961308 41961382 -240232282 + LTR49-int LTR ERV1 2404 2472 -2464 1597 189 46 0 chr1 41961506 41961786 -240231878 + AluJb SINE Alu 1 293 -19 2124 118 7 3 chr1 41961788 41962084 -240231580 + AluSx SINE Alu 1 297 -15 2089 124 0 10 chr1 41962086 41962377 -240231287 + AluSq SINE Alu 1 288 -25 35 24 0 0 chr1 41962377 41962419 -240231245 + AT_rich Low_complexity Low_complexity 1 42 0 257 132 0 113 chr1 41962455 41962518 -240231146 + FLAM SINE Alu 83 133 0 311 0 26 0 chr1 41962581 41962620 -240231044 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 937 179 0 0 chr1 41962626 41962766 -240230898 - FRAM SINE Alu -37 139 1 622 170 24 55 chr1 41962935 41963100 -240230564 + LTR49-int LTR ERV1 3567 3726 -2872 1021 191 71 63 chr1 41963200 41963408 -240230256 + LTR49-int LTR ERV1 2480 2685 -2251 1839 106 98 18 chr1 41963408 41963682 -240229982 - AluSx SINE Alu -16 296 1 1021 191 71 63 chr1 41963682 41964055 -240229609 + LTR49-int LTR ERV1 2685 2967 -1969 255 81 0 0 chr1 41964065 41964102 -240229562 - MER41B LTR ERV1 -118 517 481 1329 210 114 88 chr1 41964204 41964523 -240229141 + LTR49-int LTR ERV1 3301 3610 -1326 2369 82 3 0 chr1 41964523 41964815 -240228849 - AluSp SINE Alu -20 293 1 2355 101 0 0 chr1 41964815 41965112 -240228552 - AluSq SINE Alu -4 309 13 1329 210 114 88 chr1 41965112 41965135 -240228529 + LTR49-int LTR ERV1 3610 3631 -1305 1835 185 7 3 chr1 41965135 41965437 -240228227 - AluJb SINE Alu -9 303 1 1329 210 114 88 chr1 41965437 41965488 -240228176 + LTR49-int LTR ERV1 3631 3679 -1257 2447 91 0 7 chr1 41965488 41965796 -240227868 + AluSg SINE Alu 1 306 -4 1329 210 114 88 chr1 41965796 41966243 -240227421 + LTR49-int LTR ERV1 3679 3822 -1114 271 108 0 0 chr1 41966287 41966606 -240227058 + AluJb SINE Alu 2 320 0 251 130 152 0 chr1 41966691 41966737 -240226927 + LTR49-int LTR ERV1 5337 5389 -942 1756 155 0 19 chr1 41966765 41967075 -240226589 - AluJb SINE Alu -8 304 1 1436 179 32 11 chr1 41967105 41967229 -240226435 + AluJo SINE Alu 7 127 -185 2352 71 0 0 chr1 41967229 41967526 -240226138 + AluY SINE Alu 1 297 -14 1436 179 32 11 chr1 41967526 41967680 -240225984 + AluJo SINE Alu 127 291 -21 1414 146 94 22 chr1 41967693 41967968 -240225696 + AluJb SINE Alu 6 300 -12 1491 152 19 4 chr1 41967984 41968248 -240225416 + AluJo SINE Alu 20 287 -25 2051 94 45 3 chr1 41968259 41968547 -240225117 + AluSg SINE Alu 1 300 -10 703 179 121 85 chr1 41968554 41968777 -240224887 + MIR SINE MIR 32 262 0 219 359 58 10 chr1 41969032 41969135 -240224529 + MIR SINE MIR 16 123 -85 907 159 0 0 chr1 41969285 41969417 -240224247 - FLAM_A SINE Alu -1 132 1 1957 104 0 68 chr1 41970214 41970540 -240223124 + AluSg SINE Alu 1 304 -6 2238 81 7 10 chr1 41970937 41971232 -240222432 - AluSx SINE Alu -14 298 5 2341 66 0 3 chr1 41973351 41973654 -240220010 + AluY SINE Alu 1 302 -9 376 265 46 80 chr1 41973816 41973893 -240219771 + MIR3 SINE MIR 1 72 -136 3617 108 21 23 chr1 41973893 41974421 -240219243 + MER1A DNA MER1_type 1 527 0 376 265 46 80 chr1 41974421 41974494 -240219170 + MIR3 SINE MIR 72 146 -62 2158 99 3 0 chr1 41974554 41974846 -240218818 + AluSg SINE Alu 1 293 -17 920 178 0 12 chr1 41974922 41975091 -240218573 + AluJb SINE Alu 130 296 -16 530 305 85 37 chr1 41976126 41976480 -240217184 + L1ME4a LINE L1 4158 4528 -1618 2314 86 3 0 chr1 41976505 41976807 -240216857 + AluSq SINE Alu 1 303 -10 3705 165 83 20 chr1 41976844 41977534 -240216130 - MER44D DNA MER2_type 0 605 1 1904 154 3 3 chr1 41977582 41977888 -240215776 + AluJb SINE Alu 1 306 -6 1542 172 79 0 chr1 41977920 41978199 -240215465 + AluJo SINE Alu 1 301 -11 821 241 141 38 chr1 41978216 41978669 -240214995 + L1ME4a LINE L1 5379 5878 -243 1895 112 13 23 chr1 41978983 41979287 -240214377 + AluSx SINE Alu 1 301 -11 2211 96 0 6 chr1 41979289 41979601 -240214063 + AluSg SINE Alu 1 310 0 186 271 0 86 chr1 41979970 41980040 -240213624 - L3 LINE CR1 -1070 507 444 189 74 0 0 chr1 41980595 41980622 -240213042 + (A)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr1 41980759 41980788 -240212876 + AT_rich Low_complexity Low_complexity 1 29 0 1772 149 18 4 chr1 41980788 41980800 -240212864 + L1M3 LINE L1 5406 5416 -755 847 106 0 63 chr1 41980800 41980942 -240212722 + FLAM_C SINE Alu 1 133 0 1772 149 18 4 chr1 41980942 41981258 -240212406 + L1M3 LINE L1 5416 5738 -433 602 226 30 8 chr1 41981378 41981511 -240212153 + L2 LINE L2 16 151 -3163 2101 148 0 0 chr1 41981516 41981827 -240211837 + AluSx SINE Alu 1 311 -1 1520 236 96 2 chr1 41981847 41982254 -240211410 + L2 LINE L2 1804 2248 -1066 516 221 117 0 chr1 41982258 41982403 -240211261 + MLT1C LTR MaLR 75 236 -231 2055 131 7 0 chr1 41982580 41982886 -240210778 + AluSx SINE Alu 5 312 0 857 157 102 76 chr1 41982922 41982989 -240210675 + MER2 DNA MER2_type 2 66 -279 2267 74 0 22 chr1 41982989 41983300 -240210364 + AluY SINE Alu 1 304 -7 857 157 102 76 chr1 41983300 41983429 -240210235 + MER2 DNA MER2_type 66 203 -142 2112 88 28 0 chr1 41983450 41983734 -240209930 - AluSx SINE Alu -20 292 1 1053 75 34 0 chr1 41983738 41983885 -240209779 + AluSg/x SINE Alu 156 307 -3 1046 124 37 26 chr1 41983923 41984120 -240209544 + THE1B LTR MaLR 171 364 0 3428 193 85 57 chr1 41984122 41984544 -240209120 + L1MD1 LINE L1 4150 4559 -1617 1713 130 27 34 chr1 41984544 41984836 -240208828 - AluJb SINE Alu -22 290 1 3428 193 85 57 chr1 41984836 41985163 -240208501 + L1MD1 LINE L1 4559 4875 -1301 316 0 22 22 chr1 41985163 41985208 -240208456 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 3428 193 85 57 chr1 41985208 41985547 -240208117 + L1MD1 LINE L1 4875 5203 -973 2158 112 0 6 chr1 41985547 41985859 -240207805 + AluSq SINE Alu 1 310 -3 3428 193 85 57 chr1 41985859 41985938 -240207726 + L1MD1 LINE L1 5203 5278 -898 1893 107 0 4 chr1 41985938 41986199 -240207465 + AluSg SINE Alu 1 260 -50 303 49 0 0 chr1 41986199 41986240 -240207424 + (CA)n Simple_repeat Simple_repeat 2 42 0 3428 193 85 57 chr1 41986240 41986286 -240207378 + L1MD1 LINE L1 5277 5428 -748 948 81 0 0 chr1 41986286 41986409 -240207255 + AluSg/x SINE Alu 175 297 -15 4525 138 45 22 chr1 41986409 41986558 -240207106 + L1MD1 LINE L1 5413 5557 -685 1471 204 92 33 chr1 41986558 41986926 -240206738 + MLT1B LTR MaLR 1 390 0 4525 138 45 22 chr1 41986926 41987585 -240206079 + L1MD1 LINE L1 5557 6239 -3 221 268 222 26 chr1 41988018 41988171 -240205493 + L2 LINE L2 2245 2427 -887 711 292 147 26 chr1 41988203 41988684 -240204980 + L2 LINE L2 2776 3313 0 1998 101 20 0 chr1 41989567 41989864 -240203800 + AluSx SINE Alu 1 303 -9 233 265 29 0 chr1 41989884 41989952 -240203712 + L1MC/D LINE L1 5688 5757 -2051 725 145 178 22 chr1 41990196 41990419 -240203245 + LTR29 LTR ERV1 1 188 -434 1491 151 54 7 chr1 41990419 41990717 -240202947 + AluJo SINE Alu 1 312 0 725 145 178 22 chr1 41990717 41990829 -240202835 + LTR29 LTR ERV1 188 423 -199 * 1000 124 34 23 chr1 41990824 41991001 -240202663 + LTR49 LTR ERV1 416 594 -1 2271 60 0 0 chr1 41991037 41991319 -240202345 + AluSg SINE Alu 1 282 -28 200 314 63 35 chr1 41991776 41991892 -240201772 - MIR SINE MIR -61 147 33 329 295 151 6 chr1 41992375 41992541 -240201123 + L3 LINE CR1 1300 1489 -88 2353 274 84 8 chr1 41993041 41993841 -240199823 + L2 LINE L2 2154 3016 -297 3587 201 26 49 chr1 41994811 41995789 -240197875 - LTR5 LTR ERVK -14 955 1 180 0 0 0 chr1 41995969 41995989 -240197675 + (TCCA)n Simple_repeat Simple_repeat 3 22 0 768 219 77 0 chr1 41998014 41998183 -240195481 + MER5A DNA MER1_type 8 189 0 1969 118 0 0 chr1 41998619 41998898 -240194766 - AluSq SINE Alu -17 296 18 1951 125 4 0 chr1 41999076 41999355 -240194309 + AluSq SINE Alu 1 280 -33 2267 75 3 0 chr1 41999512 41999805 -240193859 - AluY SINE Alu -17 294 1 247 297 117 8 chr1 42002342 42002470 -240191194 - L3 LINE CR1 -43 1534 1393 205 239 114 57 chr1 42002933 42003021 -240190643 - L2 LINE L2 -330 2942 2850 714 211 0 0 chr1 42003723 42003856 -240189808 + FLAM_A SINE Alu 1 133 0 1949 159 78 50 chr1 42004843 42004885 -240188779 + MSTD LTR MaLR 3 42 -354 2384 121 28 6 chr1 42004885 42005241 -240188423 + THE1B LTR MaLR 1 364 0 1949 159 78 50 chr1 42005241 42005374 -240188290 + MSTD LTR MaLR 42 170 -226 2315 91 0 0 chr1 42005374 42005671 -240187993 + AluSg SINE Alu 1 297 -13 1949 159 78 50 chr1 42005671 42005877 -240187787 + MSTD LTR MaLR 170 396 0 225 250 17 0 chr1 42006003 42006063 -240187601 - MIR SINE MIR -30 232 172 3388 151 45 10 chr1 42006274 42006875 -240186789 + LTR26E LTR ERV1 1 622 0 805 261 119 3 chr1 42007053 42007356 -240186308 + L2 LINE L2 2849 3186 -127 2166 213 140 70 chr1 42007376 42008089 -240185575 + MER21B LTR ERV1 40 802 -61 319 339 31 0 chr1 42008099 42008226 -240185438 + L2 LINE L2 3183 3313 0 347 271 196 0 chr1 42008656 42008763 -240184901 + L2 LINE L2 3142 3269 -3 2150 101 7 3 chr1 42009020 42009316 -240184348 - AluSg SINE Alu -13 297 1 36 0 0 0 chr1 42009318 42009354 -240184310 + AT_rich Low_complexity Low_complexity 1 36 0 184 274 98 29 chr1 42010141 42010243 -240183421 + MIR SINE MIR 35 143 -119 2141 97 16 3 chr1 42011954 42012262 -240181402 + AluSx SINE Alu 1 312 0 670 278 69 98 chr1 42012517 42013269 -240180395 + HAL1 LINE L1 1 730 -1777 2052 131 0 0 chr1 42013281 42013579 -240180085 + AluSx SINE Alu 1 298 -14 290 215 52 148 chr1 42013605 42013689 -240179975 + HAL1 LINE L1 743 811 -1696 1599 193 0 7 chr1 42013689 42013984 -240179680 - AluJo SINE Alu -19 293 1 290 215 52 148 chr1 42013984 42014034 -240179630 + HAL1 LINE L1 811 864 -1643 607 88 0 78 chr1 42014049 42014151 -240179513 + AluJb SINE Alu 212 305 -7 814 235 212 68 chr1 42014174 42014390 -240179274 + HAL1 LINE L1 899 1082 -1425 2264 81 3 0 chr1 42014390 42014686 -240178978 + AluSp SINE Alu 1 297 -16 814 235 212 68 chr1 42014686 42014740 -240178924 + HAL1 LINE L1 1082 1127 -1380 2350 79 0 3 chr1 42014740 42015045 -240178619 + AluSc SINE Alu 1 304 -5 814 235 212 68 chr1 42015045 42015258 -240178406 + HAL1 LINE L1 1127 1453 -1054 964 165 0 29 chr1 42015264 42015434 -240178230 + FRAM SINE Alu 1 157 -19 1216 256 191 29 chr1 42015441 42016031 -240177633 + HAL1 LINE L1 1470 2155 -352 694 68 11 0 chr1 42016031 42016119 -240177545 + MER72 LTR ERV1 606 694 -28 395 249 107 78 chr1 42016230 42016435 -240177229 + HAL1 LINE L1 2250 2460 -47 228 219 31 47 chr1 42016485 42016549 -240177115 - L2 LINE L2 -243 3070 3008 2372 75 10 0 chr1 42016794 42017087 -240176577 - AluSg SINE Alu -14 296 1 1135 131 0 0 chr1 42017092 42017252 -240176412 - FRAM SINE Alu -19 157 1 22 0 0 0 chr1 42018135 42018157 -240175507 + AT_rich Low_complexity Low_complexity 1 22 0 228 330 32 0 chr1 42018582 42018676 -240174988 + MIR3 SINE MIR 66 162 -46 2465 134 6 70 chr1 42019201 42019296 -240174368 + L1MB3 LINE L1 5740 5839 -344 2022 136 7 13 chr1 42019296 42019605 -240174059 + AluJb SINE Alu 6 312 0 2465 134 6 70 chr1 42019605 42019925 -240173739 + L1MB3 LINE L1 5839 6178 -5 1850 91 12 8 chr1 42019925 42020167 -240173497 + AluSq SINE Alu 1 243 -70 2465 134 6 70 chr1 42020167 42020184 -240173480 + L1MB3 LINE L1 6178 6144 -39 2301 97 3 0 chr1 42020184 42020483 -240173181 - AluSx SINE Alu -12 300 1 2465 134 6 70 chr1 42020483 42020518 -240173146 + L1MB3 LINE L1 6143 6179 -4 313 294 88 34 chr1 42021010 42021272 -240172392 + L1ME LINE L1 5530 5805 -316 1374 146 78 0 chr1 42021315 42021534 -240172130 - AluJo SINE Alu -76 236 1 2078 143 3 3 chr1 42022109 42022417 -240171247 + AluSx SINE Alu 1 308 -4 2347 79 7 10 chr1 42024425 42024729 -240168935 - AluY SINE Alu -8 303 1 338 300 121 40 chr1 42025141 42025235 -240168429 - MIR SINE MIR -15 247 162 2216 101 7 7 chr1 42025235 42025531 -240168133 - AluSp SINE Alu -17 296 1 338 300 121 40 chr1 42025531 42025659 -240168005 - MIR SINE MIR -100 162 7 617 237 43 65 chr1 42026581 42026629 -240167035 - MIR SINE MIR -25 237 189 2317 103 0 3 chr1 42026629 42026931 -240166733 - AluSx SINE Alu -11 301 1 617 237 43 65 chr1 42026931 42027068 -240166596 - MIR SINE MIR -73 189 56 758 216 39 0 chr1 42027369 42027522 -240166142 - MER58A DNA MER1_type 0 159 1 993 248 77 19 chr1 42027583 42027946 -240165718 - L2 LINE L2 0 3313 2930 1161 320 60 4 chr1 42079195 42079676 -240113988 + MLT1K LTR MaLR 81 588 0 1227 173 15 38 chr1 42080003 42080269 -240113395 - Tigger1 DNA MER2_type 0 2418 2159 201 94 0 0 chr1 42080420 42080452 -240113212 + (TG)n Simple_repeat Simple_repeat 1 32 0 910 220 92 51 chr1 42081623 42081937 -240111727 + MLT1D LTR MaLR 2 328 -177 416 335 51 4 chr1 42082285 42082542 -240111122 + MER113 DNA MER1_type? 161 429 -92 2323 104 0 0 chr1 42082863 42083161 -240110503 + AluSx SINE Alu 1 298 -14 1432 258 52 8 chr1 42083164 42083644 -240110020 - Charlie4a DNA MER1_type -6 502 2 243 240 149 7 chr1 42083853 42084007 -240109657 + L1ME LINE L1 5599 5774 -347 1216 143 45 20 chr1 42084145 42084389 -240109275 - L1MC2 LINE L1 -146 6198 5949 599 254 73 17 chr1 42084415 42084592 -240109072 - MIR SINE MIR -68 194 8 230 386 114 6 chr1 42084803 42084979 -240108685 - L3 LINE CR1 -153 1424 1230 2206 135 0 0 chr1 42084980 42085292 -240108372 - AluSx SINE Alu 0 312 1 1194 119 12 0 chr1 42085491 42085651 -240108013 + AluSg/x SINE Alu 129 290 -20 2190 117 7 0 chr1 42085651 42085942 -240107722 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr1 42085956 42085984 -240107680 + GC_rich Low_complexity Low_complexity 1 28 0 2822 84 38 90 chr1 42086035 42086535 -240107129 + SVA Other Other 393 866 -520 577 97 8 37 chr1 42086553 42086687 -240106977 + SVA Other Other 665 794 -592 25 51 0 0 chr1 42086803 42086842 -240106822 + AT_rich Low_complexity Low_complexity 1 39 0 1711 199 0 10 chr1 42086842 42087134 -240106530 - AluJo SINE Alu -23 289 1 1875 172 0 34 chr1 42087167 42087487 -240106177 - AluJb SINE Alu -3 309 1 6942 61 8 51 chr1 42087524 42088522 -240105142 - SVA Other Other 0 1386 432 361 349 93 26 chr1 42088857 42089126 -240104538 - L2 LINE L2 0 3272 2986 300 70 0 0 chr1 42089211 42089254 -240104410 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 253 254 0 0 chr1 42089347 42089402 -240104262 + L2 LINE L2 3257 3311 -2 693 289 10 10 chr1 42089570 42089767 -240103897 - MIR SINE MIR 0 262 66 237 234 75 43 chr1 42089818 42089912 -240103752 - MIR SINE MIR -74 188 92 195 42 0 0 chr1 42090919 42090943 -240102721 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 306 293 103 72 chr1 42090943 42091119 -240102545 - L2 LINE L2 0 3272 3103 1026 162 66 0 chr1 42091119 42091316 -240102348 - MER6B DNA MER2_type 0 210 1 306 293 103 72 chr1 42091316 42091487 -240102177 - L2 LINE L2 -169 3103 2914 514 160 0 17 chr1 42092674 42092793 -240100871 + CT-rich Low_complexity Low_complexity 2 118 0 693 177 0 17 chr1 42092814 42092989 -240100675 + CT-rich Low_complexity Low_complexity 3 174 0 346 273 172 15 chr1 42093254 42093452 -240100212 + L2 LINE L2 2434 2662 -652 208 315 63 0 chr1 42093457 42093584 -240100080 + L2 LINE L2 2804 2938 -376 287 173 0 0 chr1 42093606 42093658 -240100006 - Charlie1 DNA MER1_type 0 2761 2710 1400 123 0 107 chr1 42093662 42093905 -240099759 + AluJb SINE Alu 1 217 -95 1818 171 11 0 chr1 42093930 42094216 -240099448 + AluJo SINE Alu 1 289 -23 337 168 40 59 chr1 42094218 42094319 -240099345 - Charlie1 DNA MER1_type -41 2720 2622 660 200 0 15 chr1 42094330 42094465 -240099199 + FLAM_A SINE Alu 1 133 0 699 231 81 0 chr1 42094469 42094642 -240099022 - Charlie1 DNA MER1_type -2535 226 40 579 257 92 81 chr1 42094670 42094831 -240098833 + L2 LINE L2 2975 3133 -180 1633 177 3 44 chr1 42094831 42095125 -240098539 - AluJb SINE Alu -30 282 1 579 257 92 81 chr1 42095125 42095298 -240098366 + L2 LINE L2 3133 3313 0 534 182 15 116 chr1 42095308 42095506 -240098158 + MER5B DNA MER1_type 1 178 0 386 333 61 0 chr1 42096099 42096231 -240097433 - MIR SINE MIR -36 226 87 361 257 125 53 chr1 42096223 42096375 -240097289 + MIR SINE MIR 33 195 -67 * 185 0 40 0 chr1 42096501 42096526 -240097138 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2085 126 0 18 chr1 42096527 42096813 -240096851 - AluJo SINE Alu -31 281 1 317 298 83 17 chr1 42096817 42097020 -240096644 - MIR SINE MIR -46 216 12 311 336 30 8 chr1 42097483 42097614 -240096050 - MIR SINE MIR -1 261 128 21 0 0 0 chr1 42097930 42097951 -240095713 + AT_rich Low_complexity Low_complexity 1 21 0 382 212 0 0 chr1 42097951 42098017 -240095647 + AluJb SINE Alu 1 66 -236 716 164 0 0 chr1 42098041 42098157 -240095507 - FLAM_C SINE Alu -17 116 1 446 88 11 99 chr1 42098164 42098255 -240095409 + AluJb SINE Alu 54 136 -176 534 171 226 7 chr1 42098803 42098949 -240094715 - MER45A DNA AcHobo 0 178 1 317 210 37 12 chr1 42100566 42100647 -240093017 + MER5A DNA MER1_type 50 132 -57 355 328 85 10 chr1 42101076 42101277 -240092387 + MIR SINE MIR 33 248 -14 474 215 118 21 chr1 42101339 42101483 -240092181 - MIR SINE MIR -70 192 35 559 211 101 25 chr1 42102120 42102319 -240091345 + L1MC4a LINE L1 5724 5937 -1871 1471 213 118 55 chr1 42102330 42102642 -240091022 - MLT1F LTR MaLR 0 542 251 180 0 0 0 chr1 42102642 42102662 -240091002 + (GA)n Simple_repeat Simple_repeat 2 21 0 1471 213 118 55 chr1 42102662 42102754 -240090910 - MLT1F LTR MaLR -291 251 166 2498 70 0 7 chr1 42102754 42103055 -240090609 + AluSc SINE Alu 1 299 -10 1471 213 118 55 chr1 42103055 42103156 -240090508 - MLT1F LTR MaLR -376 166 4 723 188 129 0 chr1 42103243 42103413 -240090251 - AluJo SINE Alu -119 193 2 2156 124 7 0 chr1 42103473 42103764 -240089900 + AluSx SINE Alu 1 293 -19 191 250 0 0 chr1 42104146 42104186 -240089478 + L2 LINE L2 3217 3256 -16 * 261 328 99 26 chr1 42104167 42104359 -240089305 + L2 LINE L2 2890 3095 -177 388 157 157 0 chr1 42104422 42104505 -240089159 + MER5A DNA MER1_type 11 106 -83 599 195 65 0 chr1 42105005 42105128 -240088536 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr1 42105675 42105696 -240087968 + AT_rich Low_complexity Low_complexity 1 21 0 2161 106 58 0 chr1 42107415 42107707 -240085957 + AluSq SINE Alu 1 309 -4 660 191 8 8 chr1 42107938 42108069 -240085595 + FLAM_C SINE Alu 1 131 -2 382 245 26 53 chr1 42108092 42108243 -240085421 + L2 LINE L2 2622 2768 -546 833 168 0 39 chr1 42108280 42108435 -240085229 - AluJb SINE Alu -27 285 137 2100 131 0 26 chr1 42108441 42108747 -240084917 - AluJb SINE Alu -12 300 3 1052 275 64 12 chr1 42108749 42109189 -240084475 + L2 LINE L2 2776 3311 -2 888 221 9 44 chr1 42109564 42109790 -240083874 - MER20 DNA MER1_type -1 218 1 1823 110 59 7 chr1 42109849 42110121 -240083543 + AluSx SINE Alu 1 286 -26 342 45 0 0 chr1 42110121 42110165 -240083499 + (TG)n Simple_repeat Simple_repeat 2 45 0 2374 95 0 0 chr1 42110338 42110633 -240083031 + AluSx SINE Alu 1 295 -17 1111 197 176 7 chr1 42110680 42110975 -240082689 - MER7A DNA MER2_type -3 343 1 324 274 15 67 chr1 42110991 42111126 -240082538 + L1ME4a LINE L1 5920 6047 -74 488 198 30 0 chr1 42111148 42111249 -240082415 + U13 snRNA snRNA 1 104 0 1328 166 132 4 chr1 42111527 42111792 -240081872 - AluJo SINE Alu -3 299 1 2393 94 7 0 chr1 42111870 42112209 -240081455 + AluY SINE Alu 1 341 0 2176 122 3 0 chr1 42112247 42112535 -240081129 + AluSx SINE Alu 11 299 -13 2319 95 0 10 chr1 42112539 42112835 -240080829 + AluSc SINE Alu 1 293 -16 305 309 6 62 chr1 42113008 42113170 -240080494 + HAL1b LINE L1 536 688 -660 22 0 0 0 chr1 42113866 42113888 -240079776 + GC_rich Low_complexity Low_complexity 1 22 0 249 272 64 16 chr1 42114566 42114691 -240078973 + G-rich Low_complexity Low_complexity 2 132 0 963 76 0 0 chr1 42115512 42115630 -240078034 + AluJb SINE Alu 1 118 -194 342 182 119 113 chr1 42115646 42115712 -240077952 - MIR SINE MIR -57 205 141 2067 144 20 7 chr1 42115712 42116018 -240077646 - AluSx SINE Alu -2 310 1 342 182 119 113 chr1 42116018 42116110 -240077554 - MIR SINE MIR -121 141 46 192 158 0 0 chr1 42116226 42116264 -240077400 + (CA)n Simple_repeat Simple_repeat 2 39 0 438 276 167 14 chr1 42116437 42116658 -240077006 + MIR SINE MIR 8 262 0 187 274 16 16 chr1 42117065 42117127 -240076537 + MIR3 SINE MIR 14 75 -133 240 320 84 87 chr1 42117448 42117736 -240075928 - L3 LINE CR1 -31 1546 1258 1872 147 13 16 chr1 42117736 42118042 -240075622 - AluJo SINE Alu -7 305 1 240 320 84 87 chr1 42118042 42118122 -240075542 - L3 LINE CR1 -319 1258 1179 192 77 0 0 chr1 42118577 42118603 -240075061 + (TC)n Simple_repeat Simple_repeat 1 26 0 316 220 154 0 chr1 42118640 42118731 -240074933 - L2 LINE L2 0 3313 3209 228 364 21 29 chr1 42118741 42118980 -240074684 + L2 LINE L2 1380 1616 -1698 659 242 25 12 chr1 42118985 42119146 -240074518 + MER97b DNA MER1_type? 17 179 -874 767 341 190 15 chr1 42119196 42120322 -240073342 + L2 LINE L2 1649 2971 -343 214 377 44 9 chr1 42120449 42120563 -240073101 - L2 LINE L2 -5 3267 3150 744 219 0 7 chr1 42120572 42120727 -240072937 + FAM SINE Alu 21 174 -11 283 302 47 0 chr1 42121101 42121187 -240072477 + L2 LINE L2 3141 3230 -42 271 265 117 66 chr1 42121381 42121577 -240072087 - L3 LINE CR1 -19 1558 1353 395 251 79 2 chr1 42121585 42121706 -240071958 + MIR SINE MIR 27 153 -66 2306 105 0 13 chr1 42121717 42122022 -240071642 + AluSx SINE Alu 1 301 -11 583 313 15 10 chr1 42123107 42123302 -240070362 - MIR3 SINE MIR -9 199 4 2239 177 40 24 chr1 42123977 42124474 -240069190 - MLT1D LTR MaLR 0 505 1 414 0 0 0 chr1 42126584 42126630 -240067034 + (CA)n Simple_repeat Simple_repeat 1 46 0 2259 119 3 0 chr1 42129315 42129610 -240064054 - AluSx SINE Alu -16 296 1 332 287 90 8 chr1 42129707 42129829 -240063835 + MIR SINE MIR 102 233 -29 2091 130 13 3 chr1 42129928 42130227 -240063437 + AluSq SINE Alu 3 304 -9 235 300 0 0 chr1 42130247 42130327 -240063337 + GA-rich Low_complexity Low_complexity 2 81 0 213 39 0 0 chr1 42130876 42130902 -240062762 + (TC)n Simple_repeat Simple_repeat 2 27 0 441 156 0 0 chr1 42130905 42130982 -240062682 + (CA)n Simple_repeat Simple_repeat 2 78 0 1633 155 47 22 chr1 42130998 42131276 -240062388 - AluJo SINE Alu -27 285 1 264 342 11 54 chr1 42131520 42131704 -240061960 + MLT1L LTR MaLR 1 176 -439 251 295 78 23 chr1 42131745 42131874 -240061790 + MLT1L LTR MaLR 258 393 -222 256 281 62 0 chr1 42131892 42131988 -240061676 - MLT1K LTR MaLR -6 582 481 1302 278 96 63 chr1 42132060 42132225 -240061439 + L1MEc LINE L1 1011 1169 -5227 7259 29 0 4 chr1 42132225 42133307 -240060357 + L1PA4 LINE L1 5071 6148 -7 1302 278 96 63 chr1 42133307 42133518 -240060146 + L1MEc LINE L1 1169 1372 -5024 2022 129 24 3 chr1 42133518 42133805 -240059859 - AluSx SINE Alu -19 293 1 1302 278 96 63 chr1 42133805 42133933 -240059731 + L1MEc LINE L1 1372 1494 -4902 2296 112 0 0 chr1 42133933 42134227 -240059437 + AluSx SINE Alu 5 298 -14 300 53 0 0 chr1 42134227 42134265 -240059399 + (CA)n Simple_repeat Simple_repeat 2 39 0 1707 173 14 14 chr1 42134275 42134559 -240059105 + AluJo SINE Alu 1 284 -28 1302 278 96 63 chr1 42134559 42134579 -240059085 + L1MEc LINE L1 1502 1520 -4876 1909 167 3 10 chr1 42134579 42134884 -240058780 + AluJb SINE Alu 1 303 -9 1302 278 96 63 chr1 42134884 42135592 -240058072 + L1MEc LINE L1 1520 2299 -4097 1882 148 7 7 chr1 42135592 42135910 -240057754 + AluJb SINE Alu 1 318 0 1763 80 4 22 chr1 42136400 42136626 -240057038 - AluSp SINE Alu -91 222 1 34 24 0 0 chr1 42136626 42136667 -240056997 + AT_rich Low_complexity Low_complexity 1 41 0 1451 181 85 3 chr1 42136667 42136949 -240056715 + AluJo SINE Alu 4 308 -4 1080 171 4 70 chr1 42136988 42137216 -240056448 - AluJo SINE Alu -99 213 1 1977 128 35 3 chr1 42137253 42137542 -240056122 - AluSx SINE Alu -14 298 1 256 287 165 37 chr1 42137662 42137826 -240055838 + L2 LINE L2 3129 3313 0 1545 147 0 0 chr1 42137963 42138181 -240055483 + AluJb SINE Alu 86 303 -9 477 301 101 18 chr1 42138263 42138482 -240055182 + MIR SINE MIR 1 237 -25 2020 48 126 7 chr1 42139210 42139479 -240054185 - AluSg SINE Alu -9 301 1 289 271 93 0 chr1 42142296 42142403 -240051261 + L2 LINE L2 3011 3127 -186 609 199 48 68 chr1 42142430 42142585 -240051079 - MER58 DNA MER1_type -55 2365 2208 2112 114 0 32 chr1 42142585 42142893 -240050771 - AluSx SINE Alu -14 298 1 609 199 48 68 chr1 42142893 42142943 -240050721 - MER58 DNA MER1_type -212 2208 85 2471 65 0 7 chr1 42143050 42143344 -240050320 + AluSp SINE Alu 1 292 -21 397 325 61 15 chr1 42143572 42143769 -240049895 - L2 LINE L2 -3 3310 3105 604 268 105 26 chr1 42143783 42144011 -240049653 - MIR SINE MIR -16 246 1 943 135 104 154 chr1 42144265 42144583 -240049081 + AluJo SINE Alu 1 302 0 1146 161 65 5 chr1 42144589 42144788 -240048876 + AluJb SINE Alu 86 296 -16 24 32 0 0 chr1 42144788 42144819 -240048845 + AT_rich Low_complexity Low_complexity 1 31 0 230 309 79 22 chr1 42144830 42144969 -240048695 - L2 LINE L2 -239 3033 2887 885 222 35 5 chr1 42145611 42145814 -240047850 - MER3 DNA MER1_type 0 209 1 2746 164 74 4 chr1 42146377 42146902 -240046762 - MER68 LTR ERV1 0 562 1 391 294 48 20 chr1 42146958 42147104 -240046560 - MER117 DNA MER1_type -1 196 47 634 309 88 9 chr1 42147335 42147655 -240046009 + L1ME3 LINE L1 5486 5830 -332 564 213 58 13 chr1 42148486 42148641 -240045023 + MER113 DNA MER1_type? 286 447 -74 919 129 0 0 chr1 42148644 42148776 -240044888 + FLAM_C SINE Alu 1 132 -1 360 64 0 0 chr1 42148777 42148824 -240044840 + (GGAAA)n Simple_repeat Simple_repeat 4 50 0 2504 64 0 3 chr1 42148832 42149128 -240044536 + AluY SINE Alu 1 295 -16 219 293 0 0 chr1 42151130 42151188 -240042476 - MIR3 SINE MIR -1 207 150 1988 100 8 0 chr1 42151232 42151492 -240042172 - AluSp SINE Alu -10 303 42 2477 94 0 0 chr1 42151864 42152162 -240041502 + AluSx SINE Alu 1 298 -14 564 338 48 5 chr1 42152164 42152371 -240041293 + MIR SINE MIR 27 242 -20 2295 120 0 0 chr1 42152628 42152927 -240040737 + AluSx SINE Alu 1 299 -13 1661 162 67 17 chr1 42153132 42153429 -240040235 - AluJb SINE Alu 0 312 1 247 259 0 0 chr1 42153455 42153509 -240040155 + L1ME LINE L1 5518 5571 -550 2531 100 0 0 chr1 42153831 42154142 -240039522 - AluSx SINE Alu -1 311 1 2408 80 0 19 chr1 42154988 42155299 -240038365 - AluSc SINE Alu 0 309 5 2419 103 0 0 chr1 42155302 42155602 -240038062 - AluSx SINE Alu -12 300 1 832 210 0 6 chr1 42156868 42157030 -240036634 + FRAM SINE Alu 1 161 -5 222 37 0 0 chr1 42158160 42158187 -240035477 + (TCC)n Simple_repeat Simple_repeat 3 29 0 180 0 0 0 chr1 42159705 42159725 -240033939 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 2171 97 29 0 chr1 42159725 42160004 -240033660 - AluSq SINE Alu -26 287 1 304 230 101 28 chr1 42160218 42160429 -240033235 + MER102a DNA MER1_type 77 320 -10 2052 148 16 3 chr1 42161535 42161840 -240031824 + AluSx SINE Alu 1 309 -3 303 71 0 0 chr1 42162653 42162695 -240030969 + (TAA)n Simple_repeat Simple_repeat 1 42 0 510 183 159 8 chr1 42163113 42163239 -240030425 + MER104 DNA Tc2 36 180 0 1395 181 28 113 chr1 42163732 42164158 -240029506 + MLT1B LTR MaLR 1 390 0 2060 134 34 0 chr1 42164226 42164524 -240029140 - AluSx SINE Alu -4 308 1 509 312 46 8 chr1 42164632 42164895 -240028769 + L2 LINE L2 2153 2425 -889 206 289 12 0 chr1 42165834 42165917 -240027747 + L2 LINE L2 2887 2970 -302 214 143 41 20 chr1 42166629 42166678 -240026986 + MIR3 SINE MIR 109 158 -50 474 114 0 0 chr1 42168863 42168942 -240024722 + (CA)n Simple_repeat Simple_repeat 1 79 0 2456 78 0 28 chr1 42170332 42170652 -240023012 + AluY SINE Alu 1 311 0 1570 124 0 0 chr1 42171125 42171335 -240022329 + AluSg/x SINE Alu 83 292 -20 189 310 60 35 chr1 42171337 42171453 -240022211 + MIR SINE MIR 29 147 -115 361 295 18 10 chr1 42171776 42171924 -240021740 - MIR SINE MIR -63 145 31 267 278 273 35 chr1 42173152 42173803 -240019861 - L2 LINE L2 -506 2808 2003 204 285 203 8 chr1 42173957 42174080 -240019584 + MIR SINE MIR 17 163 -99 219 320 97 29 chr1 42174123 42174298 -240019366 - L2 LINE L2 -1685 1629 1443 2194 135 0 6 chr1 42174417 42174728 -240018936 + AluSx SINE Alu 1 309 -3 196 333 49 0 chr1 42174747 42174870 -240018794 - L2 LINE L2 -2521 793 665 633 280 43 70 chr1 42176780 42177037 -240016627 - MIR SINE MIR 0 262 13 210 163 0 23 chr1 42177076 42177119 -240016545 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 185 266 6 96 chr1 42177361 42177538 -240016126 - L2 LINE L2 -414 2900 2740 1100 278 137 21 chr1 42178114 42178596 -240015068 + MLT1F LTR MaLR 5 542 0 828 136 0 50 chr1 42178634 42178774 -240014890 + FLAM_C SINE Alu 1 133 0 1833 163 28 0 chr1 42178793 42179082 -240014582 + AluJb SINE Alu 1 297 -15 305 222 0 0 chr1 42179828 42179891 -240013773 - L1MB8 LINE L1 -5 6173 6111 2357 102 0 0 chr1 42179891 42180186 -240013478 - AluSx SINE Alu -17 295 1 220 251 53 6 chr1 42181261 42181336 -240012328 - MIR SINE MIR -64 144 84 232 304 130 0 chr1 42181341 42181456 -240012208 - MIR SINE MIR -6 256 127 238 206 73 73 chr1 42181671 42181739 -240011925 + MLT1K LTR MaLR 182 249 -339 2366 102 0 10 chr1 42182072 42182385 -240011279 - AluSx SINE Alu 0 312 3 1958 128 12 38 chr1 42182394 42182713 -240010951 - AluJb SINE Alu -1 311 1 386 284 114 90 chr1 42182835 42183257 -240010407 + L2 LINE L2 2066 2497 -817 916 192 77 51 chr1 42183271 42183446 -240010218 - MER63D DNA MER1_type -518 543 374 2123 130 0 0 chr1 42183446 42183756 -240009908 + AluSq SINE Alu 1 310 0 916 192 77 51 chr1 42183756 42184047 -240009617 - MER63D DNA MER1_type -687 374 3 313 192 13 51 chr1 42184107 42184185 -240009479 + MER69 DNA AcHobo 2450 2524 -2 2793 171 10 137 chr1 42185006 42185322 -240008342 + L1MB2 LINE L1 3952 4306 -1840 582 132 0 0 chr1 42185322 42185413 -240008251 + AluY SINE Alu 2 92 -226 2793 171 10 137 chr1 42185413 42185432 -240008232 + L1MB2 LINE L1 4306 4326 -1820 1827 122 11 8 chr1 42185432 42185694 -240007970 + AluSq SINE Alu 44 306 -7 1856 79 0 4 chr1 42185694 42185919 -240007745 + AluSc SINE Alu 71 296 -13 2793 171 10 137 chr1 42185919 42186361 -240007303 + L1MB2 LINE L1 4324 4711 -1435 819 160 0 8 chr1 42186361 42186486 -240007178 + FLAM_C SINE Alu 1 124 -19 2636 211 29 3 chr1 42186528 42187119 -240006545 + L1MB2 LINE L1 4705 5310 -836 234 0 0 0 chr1 42187126 42187152 -240006512 + (T)n Simple_repeat Simple_repeat 1 26 0 628 85 21 0 chr1 42187152 42187246 -240006418 - HY3 scRNA scRNA -4 97 2 4316 166 16 4 chr1 42187247 42187278 -240006386 + L1PA6 LINE L1 5336 5365 -789 2213 123 3 0 chr1 42187278 42187579 -240006085 + AluSx SINE Alu 1 302 -10 4316 166 16 4 chr1 42187579 42188354 -240005310 + L1PA6 LINE L1 5365 6152 -2 1117 161 32 0 chr1 42188367 42188585 -240005079 + L1MB2 LINE L1 5762 5986 -182 2015 158 0 7 chr1 42188606 42188904 -240004760 + AluSx SINE Alu 10 305 -7 612 163 68 109 chr1 42188904 42189017 -240004647 + L1MB2 LINE L1 5960 6061 -110 1576 159 69 7 chr1 42189017 42189294 -240004370 + AluJo SINE Alu 15 308 -4 612 163 68 109 chr1 42189294 42189401 -240004263 + L1MB2 LINE L1 6061 6171 0 429 188 16 109 chr1 42189405 42189472 -240004192 + MER5B DNA MER1_type 61 112 -66 2423 72 0 0 chr1 42189472 42189797 -240003867 - AluY SINE Alu 0 311 1 429 188 16 109 chr1 42189797 42189857 -240003807 + MER5B DNA MER1_type 112 176 -2 362 324 123 10 chr1 42189953 42190246 -240003418 - L2 LINE L2 -998 2316 1991 413 282 47 41 chr1 42190251 42190421 -240003243 + MIR SINE MIR 59 229 -33 1274 236 124 43 chr1 42191507 42191896 -240001768 + MLT1L LTR MaLR 132 564 -51 1604 171 7 41 chr1 42191896 42192222 -240001442 + AluJo SINE Alu 1 316 0 1274 236 124 43 chr1 42192222 42192275 -240001389 + MLT1L LTR MaLR 564 611 -4 1391 158 39 15 chr1 42192815 42193075 -240000589 + Tigger5 DNA MER2_type 2058 2323 0 591 163 74 0 chr1 42193289 42193424 -240000240 + L1MB7 LINE L1 5023 5167 -979 1833 107 79 36 chr1 42193424 42193704 -239999960 + AluSg SINE Alu 1 292 -18 1168 162 0 0 chr1 42193704 42193877 -239999787 + AluSg/x SINE Alu 133 305 -5 375 227 11 0 chr1 42193878 42193966 -239999698 + L1MB7 LINE L1 5163 5251 -895 1336 198 141 49 chr1 42193970 42194395 -239999269 + MLT1C LTR MaLR 4 467 0 1274 179 30 0 chr1 42194460 42194695 -239998969 + L1MB7 LINE L1 5379 5620 -564 2076 144 7 3 chr1 42194759 42195065 -239998599 + AluSx SINE Alu 1 307 -5 1157 196 63 92 chr1 42195068 42195280 -239998384 - MLT1B LTR MaLR -16 374 176 2380 101 13 0 chr1 42195280 42195587 -239998077 - AluSp SINE Alu 0 313 3 1157 196 63 92 chr1 42195587 42195756 -239997908 - MLT1B LTR MaLR -214 176 4 2650 152 32 42 chr1 42195756 42196321 -239997343 + L1MB7 LINE L1 5613 6171 -13 1920 149 10 17 chr1 42196461 42196763 -239996901 + AluSx SINE Alu 1 300 -12 1151 163 0 0 chr1 42196797 42196981 -239996683 + AluSg/x SINE Alu 118 301 -9 2016 134 14 0 chr1 42197271 42197574 -239996090 + AluSx SINE Alu 3 309 0 645 267 90 28 chr1 42197659 42198015 -239995649 + L1M4 LINE L1 3589 3966 -2180 205 232 0 36 chr1 42198021 42198077 -239995587 + MIR SINE MIR 5 58 -204 2459 90 3 3 chr1 42198103 42198415 -239995249 - AluSx SINE Alu 0 312 1 1159 209 0 14 chr1 42198457 42198668 -239994996 - AluJo SINE Alu -104 208 1 1839 178 0 34 chr1 42198701 42199021 -239994643 - AluJb SINE Alu -3 309 1 2246 113 23 0 chr1 42199072 42199373 -239994291 + AluSp SINE Alu 1 308 -5 2175 123 7 0 chr1 42199509 42199802 -239993862 - AluSx SINE Alu -17 295 1 1297 109 11 6 chr1 42199802 42199977 -239993687 - AluSg/x SINE Alu -21 291 116 4576 175 40 7 chr1 42200580 42201415 -239992249 - MER21B LTR ERV1 -1 862 1 2655 56 0 7 chr1 42202965 42203270 -239990394 - AluY SINE Alu -8 303 1 369 246 96 24 chr1 42203524 42203691 -239989973 - HAL1 LINE L1 0 2507 2329 353 224 26 0 chr1 42203937 42204013 -239989651 + MIR SINE MIR 107 184 -78 748 196 0 0 chr1 42204187 42204320 -239989344 + FLAM_C SINE Alu 1 133 0 180 321 37 25 chr1 42204323 42204404 -239989260 - L2 LINE L2 -362 2951 2870 234 62 0 0 chr1 42205311 42205343 -239988321 + (CAGG)n Simple_repeat Simple_repeat 3 34 0 33 0 0 0 chr1 42206205 42206238 -239987426 + AT_rich Low_complexity Low_complexity 1 33 0 1454 165 0 5 chr1 42206261 42206479 -239987185 - AluJo SINE Alu -93 219 3 208 265 59 0 chr1 42206721 42206789 -239986875 + MIR3 SINE MIR 136 207 -1 2321 105 3 0 chr1 42206909 42207204 -239986460 + AluSg SINE Alu 1 296 -14 1033 224 114 0 chr1 42207211 42207466 -239986198 + AluJo SINE Alu 2 285 -17 291 109 0 36 chr1 42207510 42207565 -239986099 - FLAM_A SINE Alu 0 133 81 595 285 81 20 chr1 42207686 42207932 -239985732 + L2 LINE L2 2904 3164 -149 2260 111 3 3 chr1 42208034 42208332 -239985332 + AluSx SINE Alu 1 298 -14 2407 88 0 13 chr1 42208338 42208643 -239985021 + AluSx SINE Alu 1 301 -11 1814 121 12 0 chr1 42208673 42208921 -239984743 - AluSx SINE Alu -61 251 1 674 257 158 30 chr1 42208928 42209193 -239984471 - HAL1 LINE L1 -577 1930 1632 1347 175 9 0 chr1 42209194 42209411 -239984253 + AluJb SINE Alu 78 296 -16 24 0 0 51 chr1 42209426 42209443 -239984221 + AT_rich Low_complexity Low_complexity 1 17 -20 2425 88 3 0 chr1 42209443 42209749 -239983915 - AluY SINE Alu -4 307 1 24 0 0 51 chr1 42209749 42209770 -239983894 + AT_rich Low_complexity Low_complexity 17 37 0 751 220 194 7 chr1 42209799 42210108 -239983556 - HAL1 LINE L1 -881 1626 1260 371 198 11 102 chr1 42210129 42210306 -239983358 - HAL1 LINE L1 -1351 1156 996 975 188 18 0 chr1 42210360 42210525 -239983139 - AluJb SINE Alu -10 302 135 474 261 34 40 chr1 42210564 42210740 -239982924 - HAL1 LINE L1 -1595 912 738 2330 116 0 0 chr1 42210884 42211185 -239982479 + AluSx SINE Alu 1 301 -11 1083 147 0 0 chr1 42211187 42211343 -239982321 + AluSg/x SINE Alu 133 288 -22 648 163 73 24 chr1 42211360 42211483 -239982181 - FLAM_A SINE Alu -4 129 1 383 315 71 25 chr1 42211501 42211698 -239981966 - HAL1 LINE L1 -1884 623 418 578 298 53 9 chr1 42211836 42212061 -239981603 + MLT1L LTR MaLR 177 411 -204 443 209 150 85 chr1 42212195 42212246 -239981418 + MER5A DNA MER1_type 26 72 -117 1886 185 0 6 chr1 42212246 42212560 -239981104 + AluJb SINE Alu 1 312 0 443 209 150 85 chr1 42212560 42212661 -239981003 + MER5A DNA MER1_type 72 188 -1 434 172 172 39 chr1 42212795 42212923 -239980741 + MLT1E2 LTR MaLR 6 150 -474 28 0 0 0 chr1 42212923 42212951 -239980713 + AT_rich Low_complexity Low_complexity 1 28 0 1070 188 129 73 chr1 42212952 42213224 -239980440 - AluJo SINE Alu -25 287 1 1846 241 54 26 chr1 42213231 42213733 -239979931 + MLT1E2 LTR MaLR 111 626 0 533 345 94 18 chr1 42213822 42214161 -239979503 + LTR16C LTR ERVL 100 464 -27 1925 147 3 11 chr1 42214343 42214658 -239979006 - AluJb SINE Alu 0 314 2 2196 113 7 7 chr1 42215092 42215427 -239978237 - AluSx SINE Alu 0 335 1 313 335 58 30 chr1 42215512 42215915 -239977749 + MLT1L LTR MaLR 146 606 -9 236 269 154 54 chr1 42216020 42216150 -239977514 - L2 LINE L2 0 3313 3171 293 235 71 0 chr1 42216373 42216458 -239977206 - MIR SINE MIR -11 251 161 913 258 54 0 chr1 42216490 42216711 -239976953 + MLT1E2 LTR MaLR 290 522 -104 221 57 29 0 chr1 42217054 42217089 -239976575 + (CCCCCG)n Simple_repeat Simple_repeat 5 40 0 22 0 0 0 chr1 42217400 42217422 -239976242 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 42217478 42217500 -239976164 + GC_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr1 42217675 42217700 -239975964 + (CCG)n Simple_repeat Simple_repeat 2 26 0 324 224 120 8 chr1 42219680 42219805 -239973859 - MER117 DNA MER1_type -58 139 1 280 313 62 0 chr1 42220235 42220331 -239973333 + MIR SINE MIR 11 112 -150 2353 66 0 0 chr1 42220435 42220706 -239972958 + AluSx SINE Alu 24 294 -18 1988 89 23 0 chr1 42220718 42220975 -239972689 + AluSq SINE Alu 1 263 -50 874 92 0 0 chr1 42221082 42221191 -239972473 - AluSq SINE Alu -84 229 121 761 210 0 0 chr1 42221197 42221321 -239972343 + FRAM SINE Alu 1 121 -55 855 126 0 0 chr1 42221321 42221432 -239972232 - AluSq SINE Alu -202 111 1 1536 168 18 29 chr1 42221432 42221712 -239971952 + AluJo SINE Alu 29 305 -7 499 321 130 57 chr1 42221717 42221988 -239971676 - L2 LINE L2 -22 3291 3041 1899 168 19 10 chr1 42221988 42222297 -239971367 + AluJo SINE Alu 1 312 0 2074 127 3 40 chr1 42222299 42222621 -239971043 + AluSx SINE Alu 3 312 0 499 321 130 57 chr1 42222621 42222801 -239970863 - L2 LINE L2 -272 3041 2804 383 269 19 0 chr1 42222812 42222920 -239970744 - L2 LINE L2 -641 2673 2564 245 239 228 0 chr1 42224296 42224388 -239969276 - L2 LINE L2 -5 3267 3155 2579 41 0 3 chr1 42224807 42225101 -239968563 + AluY SINE Alu 1 293 -18 2179 99 33 0 chr1 42225113 42225415 -239968249 + AluSx SINE Alu 1 312 0 774 145 48 0 chr1 42225620 42225744 -239967920 + AluJo/FLAM SINE Alu 2 131 -171 2029 138 14 10 chr1 42225746 42226043 -239967621 + AluSx SINE Alu 1 298 -14 250 305 191 14 chr1 42226342 42226552 -239967112 + L1ME LINE L1 5511 5757 -364 21 57 0 0 chr1 42226631 42226666 -239966998 + AT_rich Low_complexity Low_complexity 1 35 0 835 154 0 22 chr1 42226909 42227045 -239966619 - FLAM_C SINE Alu 0 133 1 226 289 178 44 chr1 42228297 42228432 -239965232 + MIR3 SINE MIR 44 196 -12 2014 102 40 14 chr1 42228523 42228822 -239964842 + AluSx SINE Alu 1 306 0 286 294 42 8 chr1 42229623 42229742 -239963922 + MIR3 SINE MIR 9 131 -77 2064 147 0 3 chr1 42229742 42230042 -239963622 - AluSx SINE Alu -13 299 1 311 361 31 26 chr1 42231012 42231203 -239962461 + L2 LINE L2 3107 3298 -15 180 275 75 12 chr1 42231185 42231265 -239962399 + MIR SINE MIR 45 129 -79 * 22 0 0 0 chr1 42231582 42231604 -239962060 + GC_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 42235097 42235125 -239958539 + AT_rich Low_complexity Low_complexity 1 28 0 2348 85 14 0 chr1 42236539 42236832 -239956832 + AluSp SINE Alu 1 297 -16 24 0 0 0 chr1 42237535 42237559 -239956105 + AT_rich Low_complexity Low_complexity 1 24 0 206 118 0 0 chr1 42238460 42238494 -239955170 + (T)n Simple_repeat Simple_repeat 1 34 0 195 328 159 11 chr1 42239334 42239523 -239954141 + L2 LINE L2 2806 3022 -250 1674 153 6 61 chr1 42239795 42239933 -239953731 + AluJo SINE Alu 6 150 -162 2391 119 0 0 chr1 42239933 42240245 -239953419 + AluSx SINE Alu 1 312 0 1674 153 6 61 chr1 42240245 42240419 -239953245 + AluJo SINE Alu 150 301 -11 459 318 32 37 chr1 42240425 42240614 -239953050 + MIR3 SINE MIR 14 201 -7 539 253 41 20 chr1 42241514 42241660 -239952004 + MIR SINE MIR 4 152 -110 2282 114 87 51 chr1 42241661 42241843 -239951821 + MSTC LTR MaLR 1 175 -253 631 217 25 25 chr1 42241843 42241963 -239951701 + FLAM_A SINE Alu 4 123 -10 2502 65 0 0 chr1 42241963 42242253 -239951411 + AluY SINE Alu 1 290 -21 2466 70 3 0 chr1 42242253 42242551 -239951113 + AluY SINE Alu 1 299 -12 2282 114 87 51 chr1 42242551 42242779 -239950885 + MSTC LTR MaLR 174 428 0 299 247 157 0 chr1 42242789 42242878 -239950786 + MIR SINE MIR 157 259 -3 700 47 0 0 chr1 42242883 42242968 -239950696 + AluS SINE Alu 3 87 -226 2543 90 0 0 chr1 42243210 42243522 -239950142 + AluSx SINE Alu 1 312 0 238 362 126 23 chr1 42243522 42243696 -239949968 + L3 LINE CR1 1230 1421 -156 644 254 73 17 chr1 42243909 42244086 -239949578 + MIR SINE MIR 8 194 -68 1445 140 39 18 chr1 42244112 42244391 -239949273 + L1MC2 LINE L1 5949 6233 -111 1723 162 15 4 chr1 42244436 42244702 -239948962 + AluJb SINE Alu 1 269 -43 189 0 0 0 chr1 42244712 42244733 -239948931 + (TAA)n Simple_repeat Simple_repeat 3 23 0 254 193 105 0 chr1 42244733 42244790 -239948874 + L1MC2 LINE L1 6227 6289 -55 204 240 0 40 chr1 42245057 42245107 -239948557 + L2 LINE L2 3200 3247 -25 1835 169 3 32 chr1 42246693 42247007 -239946657 + AluJb SINE Alu 1 305 -7 825 164 0 27 chr1 42247540 42247686 -239945978 - FLAM_C SINE Alu -1 142 1 984 225 61 9 chr1 42247702 42247915 -239945749 + MER58A DNA MER1_type 1 224 0 2286 98 10 0 chr1 42247955 42248251 -239945413 + AluSx SINE Alu 1 299 -13 484 262 87 66 chr1 42248596 42248779 -239944885 - MER102a DNA MER1_type -1087 330 152 1914 155 3 14 chr1 42248779 42249076 -239944588 - AluJo SINE Alu -18 294 1 484 262 87 66 chr1 42249076 42249129 -239944535 - MER102a DNA MER1_type -1265 152 102 2339 131 24 71 chr1 42249129 42249580 -239944084 + Tigger2a DNA MER2_type 1 430 -4 484 262 87 66 chr1 42249580 42249628 -239944036 - MER102a DNA MER1_type -1315 102 39 1452 171 69 18 chr1 42249837 42250112 -239943552 - AluJo SINE Alu -23 289 1 2059 140 0 0 chr1 42250236 42250521 -239943143 + AluSx SINE Alu 1 285 -27 638 206 99 66 chr1 42250582 42250825 -239942839 + MER112 DNA MER1_type 3 253 -3 2267 87 0 17 chr1 42250873 42251201 -239942463 - AluY SINE Alu 0 323 1 319 91 0 0 chr1 42251201 42251245 -239942419 - Alu SINE Alu -258 44 1 497 29 143 0 chr1 42251328 42251398 -239942266 + MADE1 DNA Mariner 1 80 0 1621 210 32 86 chr1 42251408 42251835 -239941829 + L1ME3A LINE L1 5648 6032 -138 2367 113 0 0 chr1 42251835 42252144 -239941520 - AluSq SINE Alu -4 309 1 1621 210 32 86 chr1 42252144 42252275 -239941389 + L1ME3A LINE L1 6032 6169 -1 899 138 94 0 chr1 42252648 42252786 -239940878 - AluJ SINE Alu -3 309 159 23 0 0 0 chr1 42252823 42252846 -239940818 + AT_rich Low_complexity Low_complexity 1 23 0 973 145 7 0 chr1 42252854 42252999 -239940665 - AluJ SINE Alu -160 152 7 2520 61 0 10 chr1 42253040 42253350 -239940314 + AluY SINE Alu 1 307 -4 225 215 185 0 chr1 42253671 42253736 -239939928 - L3 LINE CR1 -13 1564 1488 2798 229 47 52 chr1 42253788 42254789 -239938875 - L1ME LINE L1 -5069 1001 6 214 354 30 10 chr1 42254810 42254909 -239938755 + MER5A DNA MER1_type 60 160 -29 196 250 125 0 chr1 42254918 42254966 -239938698 - L3 LINE CR1 -76 1501 1448 28 0 0 0 chr1 42255325 42255353 -239938311 + AT_rich Low_complexity Low_complexity 1 28 0 313 293 160 0 chr1 42255435 42255541 -239938123 + L2 LINE L2 3149 3271 -1 1096 89 19 6 chr1 42256023 42256180 -239937484 - L1PA5 LINE L1 -3 6151 5993 2295 109 0 6 chr1 42256264 42256575 -239937089 + AluSg SINE Alu 1 309 -1 299 224 112 60 chr1 42256771 42256905 -239936759 - MIR SINE MIR -114 148 8 1394 259 78 12 chr1 42257062 42257483 -239936181 - L2 LINE L2 0 3313 2840 1536 195 47 3 chr1 42257483 42257781 -239935883 + AluJb SINE Alu 1 311 -1 1394 259 78 12 chr1 42257781 42257886 -239935778 - L2 LINE L2 -473 2840 2743 367 97 0 48 chr1 42257886 42257948 -239935716 + Alu SINE Alu 1 55 -244 31 26 0 0 chr1 42257994 42258032 -239935632 + AT_rich Low_complexity Low_complexity 1 38 0 1374 266 106 31 chr1 42258032 42258484 -239935180 - L2 LINE L2 -557 2757 2272 2460 68 3 0 chr1 42259346 42259638 -239934026 - AluY SINE Alu -18 293 1 199 316 193 12 chr1 42260115 42260286 -239933378 + L2 LINE L2 3112 3313 0 1854 156 14 0 chr1 42260608 42260883 -239932781 - AluJb SINE Alu -20 292 14 2192 145 0 0 chr1 42261034 42261345 -239932319 - AluSx SINE Alu -1 311 1 199 354 143 62 chr1 42261726 42261935 -239931729 + L2 LINE L2 3044 3269 -3 2456 84 3 0 chr1 42262334 42262643 -239931021 - AluSq SINE Alu -3 310 1 464 289 15 18 chr1 42262770 42262973 -239930691 + MIR SINE MIR 3 262 0 1824 163 19 29 chr1 42265287 42265600 -239928064 + AluJo SINE Alu 1 310 -2 918 178 7 7 chr1 42265646 42265792 -239927872 + AluJb SINE Alu 122 267 -45 23 54 0 0 chr1 42265843 42265880 -239927784 + AT_rich Low_complexity Low_complexity 1 37 0 423 319 101 4 chr1 42266282 42266520 -239927144 - L2 LINE L2 -1265 2049 1789 1574 181 71 0 chr1 42266559 42266840 -239926824 - AluJo SINE Alu -11 301 1 1265 190 119 19 chr1 42267037 42267347 -239926317 - MER58B DNA MER1_type 0 341 1 206 163 0 23 chr1 42267499 42267542 -239926122 + L2 LINE L2 3268 3309 -4 2000 116 68 0 chr1 42467619 42467911 -239725753 - AluSx SINE Alu 0 312 1 922 179 32 55 chr1 42468194 42468412 -239725252 + L1MC/D LINE L1 5452 5664 -2121 739 160 30 30 chr1 42468416 42468547 -239725117 + FLAM_A SINE Alu 1 131 -2 6036 70 20 54 chr1 42468550 42469654 -239724010 + SVA Other Other 1 868 -531 217 80 40 40 chr1 42469928 42469978 -239723686 + T-rich Low_complexity Low_complexity 2 51 0 223 266 47 16 chr1 42470298 42470362 -239723302 + MIR SINE MIR 184 249 -13 2322 100 3 0 chr1 42470405 42470704 -239722960 + AluSp SINE Alu 1 300 -13 236 102 82 0 chr1 42470833 42470882 -239722782 + Alu SINE Alu 248 300 0 2284 76 3 14 chr1 42470902 42471231 -239722433 + AluSp SINE Alu 1 326 0 251 60 80 20 chr1 42471360 42471410 -239722254 + Alu SINE Alu 250 302 0 2335 97 3 10 chr1 42471426 42471735 -239721929 + AluSp SINE Alu 1 307 -6 2044 116 0 17 chr1 42471911 42472213 -239721451 + AluSx SINE Alu 1 297 -15 659 184 9 0 chr1 42472328 42472442 -239721222 + AluJb SINE Alu 186 300 -12 1566 74 0 15 chr1 42472670 42472872 -239720792 - AluYa5 SINE Alu -15 296 98 680 106 89 16 chr1 42473150 42473273 -239720391 + MER119 DNA MER1_type 402 533 -50 2232 106 7 10 chr1 42473273 42473576 -239720088 - AluSp SINE Alu -11 302 1 3337 163 29 39 chr1 42473576 42473660 -239720004 - L1MC3 LINE L1 -1393 6392 6309 2298 89 17 0 chr1 42473660 42473953 -239719711 - AluSp SINE Alu -13 300 3 3337 163 29 39 chr1 42473953 42474146 -239719518 - L1MC3 LINE L1 -1476 6309 6115 2299 77 3 10 chr1 42474146 42474445 -239719219 - AluY SINE Alu -14 297 1 3337 163 29 39 chr1 42474445 42474903 -239718761 - L1MC3 LINE L1 -1670 6115 5664 888 201 0 29 chr1 42474918 42475092 -239718572 - AluJo SINE Alu -23 289 121 29 0 0 0 chr1 42475092 42475121 -239718543 + AT_rich Low_complexity Low_complexity 1 29 0 6841 67 17 35 chr1 42475123 42476248 -239717416 - SVA Other Other -633 1375 430 2246 112 0 19 chr1 42476438 42476612 -239717052 - AluSq SINE Alu -6 307 140 2434 89 0 0 chr1 42476612 42476914 -239716750 - AluSq SINE Alu -10 303 2 2246 112 0 19 chr1 42476914 42477052 -239716612 - AluSq SINE Alu -173 140 1 796 216 106 37 chr1 42477172 42477390 -239716274 + MIR SINE MIR 20 252 -10 260 320 0 0 chr1 42477413 42477491 -239716173 - MIR SINE MIR -5 257 180 26 0 0 0 chr1 42477491 42477517 -239716147 + AT_rich Low_complexity Low_complexity 1 26 0 2202 96 11 4 chr1 42477523 42477838 -239715826 - AluSg SINE Alu 0 317 1 2049 131 0 35 chr1 42477838 42478014 -239715650 - AluSq SINE Alu -11 302 140 2170 105 3 7 chr1 42478014 42478349 -239715315 - AluSx SINE Alu 0 312 1 2049 131 0 35 chr1 42478349 42478485 -239715179 - AluSq SINE Alu -173 140 1 2217 105 0 3 chr1 42478496 42478805 -239714859 - AluSg SINE Alu 0 308 1 563 296 23 29 chr1 42478809 42478969 -239714695 - MIR SINE MIR -70 192 32 803 125 0 76 chr1 42478969 42479113 -239714551 + FLAM_C SINE Alu 1 133 0 563 296 23 29 chr1 42479113 42479124 -239714540 - MIR SINE MIR -230 32 22 1960 105 62 4 chr1 42479223 42479499 -239714165 - AluSq SINE Alu -21 292 1 2524 72 0 0 chr1 42479749 42480053 -239713611 - AluY SINE Alu -7 304 1 204 67 0 0 chr1 42481689 42481719 -239711945 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2034 112 3 25 chr1 42481724 42481873 -239711791 - AluSx SINE Alu -32 280 138 2536 74 3 3 chr1 42481873 42482184 -239711480 - AluY SINE Alu 0 311 1 2034 112 3 25 chr1 42482184 42482320 -239711344 - AluSx SINE Alu -174 138 1 1992 107 10 24 chr1 42482320 42482611 -239711053 - AluSx SINE Alu -21 291 5 2491 75 7 0 chr1 42482622 42482929 -239710735 - AluSp SINE Alu -4 309 1 29 0 0 0 chr1 42483333 42483362 -239710302 + AT_rich Low_complexity Low_complexity 1 29 0 2208 99 0 17 chr1 42483362 42483664 -239710000 - AluSx SINE Alu -11 301 5 1564 171 4 4 chr1 42483854 42484111 -239709553 - AluJb SINE Alu -47 265 9 820 182 0 0 chr1 42484275 42484407 -239709257 - FLAM_C SINE Alu 0 133 2 2228 125 7 0 chr1 42484407 42484711 -239708953 - AluSx SINE Alu -2 310 5 2029 111 0 14 chr1 42484968 42485248 -239708416 - AluSx SINE Alu -13 299 24 2343 95 3 7 chr1 42485391 42485697 -239707967 - AluSc SINE Alu -4 305 1 2016 101 0 18 chr1 42486136 42486412 -239707252 - AluSg SINE Alu -39 271 1 505 239 68 91 chr1 42486433 42486609 -239707055 + MIR SINE MIR 86 257 -5 180 292 56 14 chr1 42486739 42486811 -239706853 + MIR3 SINE MIR 118 192 -16 189 149 0 134 chr1 42486974 42487041 -239706623 + L2 LINE L2 2454 2511 -803 * 290 204 0 0 chr1 42487024 42487078 -239706586 - L2 LINE L2 -2 3311 3258 2302 68 0 10 chr1 42487101 42487394 -239706270 + AluY SINE Alu 1 290 -21 1907 113 0 0 chr1 42488071 42488327 -239705337 - AluSx SINE Alu -3 309 54 688 122 10 0 chr1 42488329 42488427 -239705237 + AluSc SINE Alu 150 248 -61 1154 163 9 37 chr1 42488427 42488642 -239705022 + AluJo SINE Alu 85 293 -19 2065 149 0 7 chr1 42488677 42488986 -239704678 + AluJb SINE Alu 1 307 -5 958 167 73 21 chr1 42489473 42489665 -239703999 - MER105 DNA DNA -1 203 2 1028 203 212 0 chr1 42490434 42490675 -239702989 + AluSg SINE Alu 2 293 -7 2180 117 7 3 chr1 42491226 42491526 -239702138 + AluSx SINE Alu 1 301 -11 2262 73 3 17 chr1 42491728 42492016 -239701648 + AluSp SINE Alu 10 293 -20 196 178 89 0 chr1 42492481 42492526 -239701138 - L2 LINE L2 -1 3312 3264 317 161 16 16 chr1 42492756 42492818 -239700846 - AluS SINE Alu -232 71 10 306 85 0 21 chr1 42494105 42494151 -239699513 + AluJb SINE Alu 1 45 -257 328 227 0 23 chr1 42494151 42494239 -239699425 + AluY SINE Alu 1 86 -222 286 122 40 81 chr1 42494396 42494470 -239699194 + AluJb SINE Alu 55 125 -177 2472 65 0 3 chr1 42494470 42494761 -239698903 + AluY SINE Alu 1 290 -21 2360 73 3 10 chr1 42494761 42495063 -239698601 + AluY SINE Alu 1 300 -11 1451 145 9 0 chr1 42495064 42495292 -239698372 + MSTC LTR MaLR 199 428 0 299 247 157 0 chr1 42495302 42495391 -239698273 + MIR SINE MIR 157 259 -3 700 47 0 0 chr1 42495396 42495481 -239698183 + AluS SINE Alu 3 87 -225 2508 89 0 3 chr1 42495723 42496036 -239697628 + AluSx SINE Alu 1 312 0 211 360 126 29 chr1 42496037 42496212 -239697452 + L3 LINE CR1 1230 1421 -156 644 254 73 17 chr1 42496426 42496603 -239697061 + MIR SINE MIR 8 194 -68 1438 143 39 18 chr1 42496629 42496908 -239696756 + L1MC2 LINE L1 5949 6233 -111 1723 162 15 4 chr1 42496955 42497221 -239696443 + AluJb SINE Alu 1 269 -43 189 0 0 0 chr1 42497231 42497252 -239696412 + (TAA)n Simple_repeat Simple_repeat 3 23 0 247 207 86 0 chr1 42497252 42497310 -239696354 + L1MC2 LINE L1 6227 6289 -55 204 240 0 40 chr1 42497580 42497630 -239696034 + L2 LINE L2 3200 3247 -25 1677 174 0 50 chr1 42499239 42499560 -239694104 + AluJb SINE Alu 1 305 -7 764 163 0 41 chr1 42500097 42500244 -239693420 - FLAM_C SINE Alu -1 142 2 975 234 56 9 chr1 42500262 42500476 -239693188 + MER58A DNA MER1_type 1 224 0 2072 92 10 20 chr1 42500529 42500821 -239692843 + AluSx SINE Alu 11 299 -13 494 271 57 80 chr1 42501168 42501352 -239692312 - MER102b DNA MER1_type -1087 341 154 1849 145 3 21 chr1 42501352 42501641 -239692023 - AluJo SINE Alu -18 294 11 494 271 57 80 chr1 42501641 42501706 -239691958 - MER102b DNA MER1_type -1274 154 98 1985 140 19 104 chr1 42501706 42502176 -239691488 + Tigger2a DNA MER2_type 1 430 -4 494 271 57 80 chr1 42502176 42502224 -239691440 - MER102b DNA MER1_type -1330 98 50 1382 175 63 26 chr1 42502436 42502705 -239690959 - AluJo SINE Alu -23 289 11 1870 151 0 21 chr1 42502840 42503131 -239690533 + AluSx SINE Alu 1 285 -27 626 207 89 69 chr1 42503192 42503438 -239690226 + MER112 DNA MER1_type 3 253 -3 2197 87 0 24 chr1 42503487 42503817 -239689847 - AluY SINE Alu 0 323 1 293 56 0 0 chr1 42503817 42503853 -239689811 - Alu SINE Alu -258 44 9 429 44 147 15 chr1 42503946 42504014 -239689650 + MADE1 DNA Mariner 1 77 -3 1596 208 25 92 chr1 42504067 42504459 -239689205 + L1ME3A LINE L1 5676 6024 -146 2281 114 0 7 chr1 42504459 42504767 -239688897 - AluSq SINE Alu -4 309 4 1596 208 25 92 chr1 42504767 42504904 -239688760 + L1ME3A LINE L1 6024 6169 -1 898 144 93 0 chr1 42505278 42505417 -239688247 - AluJ SINE Alu -2 310 159 23 0 0 0 chr1 42505454 42505477 -239688187 + AT_rich Low_complexity Low_complexity 1 23 0 973 145 7 0 chr1 42505485 42505630 -239688034 - AluJ SINE Alu -160 152 7 655 229 14 50 chr1 42505774 42505992 -239687672 + AluY SINE Alu 73 282 -29 278 271 14 14 chr1 42506338 42506408 -239687256 - MIR SINE MIR -165 97 28 367 306 31 57 chr1 42507329 42507522 -239686142 - MIR3 SINE MIR -7 201 14 1633 161 6 67 chr1 42507528 42507705 -239685959 - AluJo SINE Alu -10 302 151 2328 118 0 6 chr1 42507705 42508019 -239685645 - AluSx SINE Alu 0 312 1 1633 161 6 67 chr1 42508019 42508157 -239685507 - AluJo SINE Alu -161 151 6 181 295 174 32 chr1 42508432 42508622 -239685042 - L2 LINE L2 -250 3022 2806 206 118 0 0 chr1 42509467 42509501 -239684163 + (A)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr1 42510410 42510434 -239683230 + AT_rich Low_complexity Low_complexity 1 24 0 2208 84 14 14 chr1 42511140 42511437 -239682227 - AluSp SINE Alu -16 297 1 21 36 0 0 chr1 42512869 42512897 -239680767 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 42516426 42516448 -239677216 + GC_rich Low_complexity Low_complexity 1 22 0 180 275 75 12 chr1 42516768 42516848 -239676816 - MIR SINE MIR -79 129 45 * 307 350 36 46 chr1 42516830 42517024 -239676640 - L2 LINE L2 -15 3298 3107 1862 147 0 11 chr1 42518004 42518303 -239675361 + AluSx SINE Alu 6 282 -30 293 308 33 8 chr1 42518303 42518423 -239675241 - MIR3 SINE MIR -77 131 9 1850 91 42 15 chr1 42519230 42519519 -239674145 - AluSx SINE Alu 0 306 11 224 324 162 37 chr1 42519626 42519762 -239673902 - MIR3 SINE MIR -12 196 44 800 139 0 23 chr1 42521031 42521160 -239672504 + FLAM_C SINE Alu 9 134 -9 21 57 0 0 chr1 42521404 42521439 -239672225 + AT_rich Low_complexity Low_complexity 1 35 0 271 302 175 26 chr1 42521518 42521786 -239671878 - L1ME LINE L1 -364 5757 5450 1791 143 13 20 chr1 42522030 42522330 -239671334 - AluSx SINE Alu -14 298 1 758 145 48 0 chr1 42522333 42522457 -239671207 - AluJo/FLAM SINE Alu -171 131 2 1943 112 33 3 chr1 42522663 42522966 -239670698 - AluSx SINE Alu 0 312 1 2412 41 0 7 chr1 42522982 42523277 -239670387 - AluY SINE Alu -18 293 1 244 239 228 0 chr1 42523696 42523788 -239669876 + L2 LINE L2 3155 3267 -5 375 269 19 0 chr1 42525173 42525281 -239668383 + L2 LINE L2 2564 2673 -641 214 293 102 78 chr1 42525292 42525472 -239668192 + L2 LINE L2 2804 2978 -335 1883 127 3 43 chr1 42525472 42525795 -239667869 - AluSx SINE Alu 0 312 3 1276 229 16 10 chr1 42525797 42526107 -239667557 - AluJo SINE Alu 0 312 1 214 293 102 78 chr1 42526107 42526179 -239667485 + L2 LINE L2 2978 3065 -248 2206 63 0 17 chr1 42526383 42526683 -239666981 + AluY SINE Alu 13 307 -4 220 212 167 0 chr1 42527005 42527071 -239666593 - L3 LINE CR1 -13 1564 1488 2975 229 45 54 chr1 42527119 42528130 -239665534 - L1ME LINE L1 -5064 1006 6 192 370 20 10 chr1 42528152 42528252 -239665412 + MER5A DNA MER1_type 60 160 -29 199 250 125 0 chr1 42528261 42528309 -239665355 - L3 LINE CR1 -76 1501 1448 27 35 0 0 chr1 42528674 42528703 -239664961 + AT_rich Low_complexity Low_complexity 1 29 0 320 293 160 0 chr1 42528785 42528891 -239664773 + L2 LINE L2 3149 3271 -1 1088 94 19 12 chr1 42529375 42529535 -239664129 - L1PA5 LINE L1 -1 6153 5993 2069 90 0 14 chr1 42529628 42529917 -239663747 + AluSg SINE Alu 9 293 -17 261 231 124 58 chr1 42530130 42530251 -239663413 - MIR SINE MIR -63 145 20 1370 266 64 21 chr1 42530425 42530846 -239662818 - L2 LINE L2 0 3313 2849 1305 181 47 37 chr1 42530846 42531145 -239662519 + AluJb SINE Alu 1 302 0 1370 266 64 21 chr1 42531145 42531257 -239662407 - L2 LINE L2 -464 2849 2743 391 153 0 0 chr1 42531257 42531316 -239662348 + AluJ/FLAM SINE Alu 1 59 -243 31 26 0 0 chr1 42531369 42531407 -239662257 + AT_rich Low_complexity Low_complexity 1 38 0 1297 270 103 35 chr1 42531407 42531862 -239661802 - L2 LINE L2 -557 2757 2272 2216 68 3 10 chr1 42532733 42533028 -239660636 - AluY SINE Alu -18 293 1 204 216 20 20 chr1 42533630 42533681 -239659983 + L2 LINE L2 3222 3272 0 1405 151 14 35 chr1 42534004 42534289 -239659375 - AluJb SINE Alu -20 292 14 1817 145 0 22 chr1 42534440 42534758 -239658906 - AluSx SINE Alu -1 311 1 181 351 142 71 chr1 42535143 42535354 -239658310 + L2 LINE L2 3044 3269 -3 2250 84 3 6 chr1 42535760 42536071 -239657593 - AluSq SINE Alu -3 310 1 455 289 15 18 chr1 42536198 42536401 -239657263 + MIR SINE MIR 3 262 0 212 197 0 61 chr1 42538705 42538728 -239654936 + A-rich Low_complexity Low_complexity 2 25 -38 1665 165 19 32 chr1 42538728 42539043 -239654621 + AluJo SINE Alu 1 311 -1 212 197 0 61 chr1 42539043 42539085 -239654579 + A-rich Low_complexity Low_complexity 25 63 0 816 177 7 14 chr1 42539089 42539236 -239654428 + AluJb SINE Alu 122 267 -45 23 54 0 0 chr1 42539288 42539325 -239654339 + AT_rich Low_complexity Low_complexity 1 37 0 413 318 100 8 chr1 42539732 42539971 -239653693 - L2 LINE L2 -1265 2049 1789 1404 184 71 3 chr1 42540010 42540293 -239653371 - AluJo SINE Alu -10 302 1 1247 190 119 19 chr1 42540491 42540801 -239652863 - MER58B DNA MER1_type 0 341 1 209 163 0 23 chr1 42540955 42540998 -239652666 + L2 LINE L2 3268 3309 -4 467 286 32 0 chr1 42542043 42542169 -239651495 + L2 LINE L2 3183 3312 -1 255 309 221 38 chr1 42542231 42542493 -239651171 - L2 LINE L2 -1304 2010 1701 186 103 0 0 chr1 42542501 42542530 -239651134 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1471 190 18 11 chr1 42542532 42542811 -239650853 - AluJb SINE Alu -31 281 1 216 331 100 81 chr1 42543129 42543389 -239650275 - L2 LINE L2 -36 3236 2972 180 0 0 0 chr1 42543398 42543418 -239650246 + (A)n Simple_repeat Simple_repeat 1 20 0 591 302 121 14 chr1 42544270 42544485 -239649179 + MIR SINE MIR 9 246 -16 1392 127 123 36 chr1 42544719 42544995 -239648669 + AluJb SINE Alu 1 300 -2 486 264 127 61 chr1 42545242 42545439 -239648225 - MIR SINE MIR -6 256 47 2137 116 0 0 chr1 42546159 42546460 -239647204 + AluSx SINE Alu 1 301 -11 622 209 99 29 chr1 42546740 42546912 -239646752 + AluJo SINE Alu 116 299 -13 1510 175 33 13 chr1 42546979 42547282 -239646382 + AluJb SINE Alu 1 309 -3 850 201 0 30 chr1 42547348 42547517 -239646147 + FRAM SINE Alu 13 176 0 359 171 13 0 chr1 42547534 42547610 -239646054 + GA-rich Low_complexity Low_complexity 2 78 0 319 222 71 79 chr1 42548308 42548434 -239645230 + L3 LINE CR1 585 709 -868 325 214 90 34 chr1 42548642 42548731 -239644933 - MER103 DNA DNA -71 95 2 22 0 0 0 chr1 42548878 42548900 -239644764 + AT_rich Low_complexity Low_complexity 1 22 0 1911 145 0 3 chr1 42549662 42549959 -239643705 - AluSx SINE Alu -16 296 1 319 305 83 72 chr1 42550116 42550383 -239643281 + L2 LINE L2 2614 2886 -386 988 226 23 9 chr1 42550383 42550600 -239643064 + MER58A DNA MER1_type 2 221 -3 319 305 83 72 chr1 42550600 42550807 -239642857 + L2 LINE L2 2886 3089 -183 1605 283 99 38 chr1 42550989 42551044 -239642620 + L3 LINE CR1 766 816 -761 2134 104 0 16 chr1 42551044 42551352 -239642312 - AluSq SINE Alu -10 303 1 1605 283 99 38 chr1 42551352 42551440 -239642224 + L3 LINE CR1 816 897 -680 1006 216 53 5 chr1 42551440 42551648 -239642016 - MER20 DNA MER1_type 0 219 2 1605 283 99 38 chr1 42551648 42551822 -239641842 + L3 LINE CR1 897 1059 -518 2271 83 3 3 chr1 42551822 42552123 -239641541 + AluSp SINE Alu 1 301 -12 1605 283 99 38 chr1 42552123 42552537 -239641127 + L3 LINE CR1 1059 1544 -33 1853 101 0 4 chr1 42552721 42552969 -239640695 + AluSx SINE Alu 1 247 -65 1717 143 25 56 chr1 42553214 42553536 -239640128 - AluSx SINE Alu 0 312 1 2203 96 0 7 chr1 42553540 42553841 -239639823 - AluSx SINE Alu -4 308 10 888 121 0 23 chr1 42554963 42555095 -239638569 + FLAM_C SINE Alu 5 133 0 442 344 113 5 chr1 42555340 42555535 -239638129 + MIR SINE MIR 20 235 -27 229 284 11 45 chr1 42555721 42555809 -239637855 + L2 LINE L2 3187 3271 -1 1528 173 0 27 chr1 42557927 42558228 -239635436 - AluJo SINE Alu -19 293 1 2180 100 0 13 chr1 42558545 42558854 -239634810 + AluSq SINE Alu 2 306 -7 1988 121 3 13 chr1 42558854 42559168 -239634496 + AluSx SINE Alu 1 311 -1 1500 133 72 23 chr1 42559584 42559848 -239633816 - MER7A DNA MER2_type -1 345 69 804 147 0 28 chr1 42559849 42559992 -239633672 + AluSq SINE Alu 1 139 -174 180 0 0 0 chr1 42560370 42560390 -239633274 + (A)n Simple_repeat Simple_repeat 1 20 0 2231 63 0 3 chr1 42560390 42560674 -239632990 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr1 42560674 42560697 -239632967 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 871 129 0 0 chr1 42560698 42560822 -239632842 + AluSq SINE Alu 136 259 -54 204 40 0 0 chr1 42560846 42560871 -239632793 + (CA)n Simple_repeat Simple_repeat 1 25 0 362 232 37 0 chr1 42560887 42560969 -239632695 - MER7A DNA MER2_type -262 84 2 2167 104 0 0 chr1 42560973 42561271 -239632393 - AluSx SINE Alu -14 298 1 185 288 113 12 chr1 42561606 42561686 -239631978 - L2 LINE L2 -2 3311 3224 2087 90 14 10 chr1 42562068 42562358 -239631306 + AluSx SINE Alu 5 295 -17 182 319 11 43 chr1 42562361 42562455 -239631209 + MER5A DNA MER1_type 97 187 -2 351 297 23 51 chr1 42562679 42562854 -239630810 - L2 LINE L2 -814 2500 2331 751 175 0 36 chr1 42563277 42563414 -239630250 + AluJb SINE Alu 87 218 -94 198 0 0 0 chr1 42563557 42563579 -239630085 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 270 0 0 0 chr1 42563578 42563608 -239630056 + (CA)n Simple_repeat Simple_repeat 1 30 0 1881 123 3 3 chr1 42564127 42564411 -239629253 + AluSc SINE Alu 4 287 -22 596 262 178 14 chr1 42564566 42564780 -239628884 + MIR SINE MIR 3 251 -11 1806 100 93 7 chr1 42565230 42565510 -239628154 + AluSq SINE Alu 1 304 -9 209 246 35 18 chr1 42566089 42566146 -239627518 + MIR3 SINE MIR 14 71 -137 2206 89 3 16 chr1 42566159 42566473 -239627191 - AluSx SINE Alu -2 310 1 802 155 0 23 chr1 42566492 42566621 -239627043 - FLAM_C SINE Alu -3 130 5 1990 88 3 14 chr1 42566641 42566963 -239626701 - AluSg SINE Alu 0 319 1 294 346 19 9 chr1 42566964 42567071 -239626593 + MIR3 SINE MIR 62 169 -39 933 232 36 27 chr1 42567374 42567598 -239626066 - AluJo SINE Alu -86 226 1 2216 167 0 6 chr1 42567622 42567981 -239625683 + MLT1A1 LTR MaLR 1 357 -8 625 251 117 82 chr1 42568023 42568061 -239625603 + MLT1H LTR MaLR 71 106 -443 2143 109 7 13 chr1 42568061 42568365 -239625299 + AluSx SINE Alu 1 302 -10 2063 113 0 7 chr1 42568365 42568675 -239624989 + AluSx SINE Alu 1 308 0 2014 131 0 32 chr1 42568677 42568812 -239624852 + AluSx SINE Alu 1 139 -173 2148 116 24 0 chr1 42568812 42569104 -239624560 + AluSx SINE Alu 1 299 -13 2014 131 0 32 chr1 42569104 42569282 -239624382 + AluSx SINE Alu 139 304 -8 2450 82 0 10 chr1 42569285 42569589 -239624075 + AluSp SINE Alu 4 304 -9 625 251 117 82 chr1 42569589 42570004 -239623660 + MLT1H LTR MaLR 107 549 0 2017 131 7 7 chr1 42571734 42572032 -239621632 + AluSx SINE Alu 8 305 -7 2467 79 0 0 chr1 42572492 42572784 -239620880 - AluY SINE Alu -19 292 1 1811 167 3 14 chr1 42573325 42573618 -239620046 - AluJo SINE Alu -10 302 13 1146 175 0 149 chr1 42573668 42573807 -239619857 + AluJb SINE Alu 14 172 -140 2196 45 0 77 chr1 42573807 42574118 -239619546 + AluY SINE Alu 5 291 -20 1146 175 0 149 chr1 42574118 42574315 -239619349 + AluJb SINE Alu 172 299 -13 1858 109 85 11 chr1 42574315 42574598 -239619066 + AluSg SINE Alu 1 304 -6 898 285 80 31 chr1 42574625 42575138 -239618526 + L1MC4a LINE L1 5405 5942 -1866 209 56 0 28 chr1 42575872 42575908 -239617756 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1152 128 0 6 chr1 42575913 42576069 -239617595 - AluSg/x SINE Alu -30 282 128 21 0 0 0 chr1 42576231 42576252 -239617412 + GC_rich Low_complexity Low_complexity 1 21 0 2206 81 0 55 chr1 42576386 42576695 -239616969 + AluSc SINE Alu 1 292 -17 729 241 78 22 chr1 42576700 42576932 -239616732 + MIR SINE MIR 15 259 -3 1840 127 39 0 chr1 42576933 42577192 -239616472 + AluSx SINE Alu 36 304 -8 2217 82 9 41 chr1 42577809 42577841 -239615823 - AluSg SINE Alu -5 305 274 279 0 0 0 chr1 42577841 42577872 -239615792 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2217 82 9 41 chr1 42577872 42578154 -239615510 - AluSg SINE Alu -36 274 1 1545 185 31 7 chr1 42578159 42578446 -239615218 - AluJo SINE Alu -18 294 1 446 211 208 7 chr1 42578622 42578762 -239614902 + MIR SINE MIR 65 231 -31 2095 137 0 19 chr1 42579251 42579565 -239614099 + AluSg SINE Alu 1 308 -2 205 256 24 0 chr1 42581758 42581840 -239611824 + CT-rich Low_complexity Low_complexity 2 85 0 1177 197 0 10 chr1 42581842 42582040 -239611624 - AluJo SINE Alu -116 196 1 2220 109 0 16 chr1 42582128 42582439 -239611225 + AluSg SINE Alu 1 306 -4 601 93 0 12 chr1 42582486 42582572 -239611092 + U6 snRNA snRNA 1 85 -22 21 0 0 0 chr1 42582572 42582593 -239611071 + AT_rich Low_complexity Low_complexity 1 21 0 2386 93 0 6 chr1 42582596 42582907 -239610757 + AluY SINE Alu 1 309 -2 2390 86 0 0 chr1 42583366 42583669 -239609995 + AluSg1 SINE Alu 1 303 -6 533 113 0 0 chr1 42583806 42583877 -239609787 - AluS SINE Alu -228 84 14 203 276 195 43 chr1 42585057 42585242 -239608422 - MIR SINE MIR -3 259 47 1388 205 53 20 chr1 42586458 42586760 -239606904 + AluJo SINE Alu 1 312 0 183 206 123 27 chr1 42586834 42586907 -239606757 + L2 LINE L2 3193 3272 0 344 269 134 15 chr1 42587443 42587577 -239606087 - MIR3 SINE MIR -1 207 58 1758 148 97 4 chr1 42587594 42587872 -239605792 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 42587963 42587985 -239605679 + AT_rich Low_complexity Low_complexity 1 22 0 612 250 145 10 chr1 42588237 42588437 -239605227 + MIR SINE MIR 36 262 0 2146 117 3 7 chr1 42588449 42588748 -239604916 + AluSp SINE Alu 1 298 -15 2402 78 3 0 chr1 42588999 42589314 -239604350 + AluSp SINE Alu 1 316 0 254 356 144 21 chr1 42589551 42589745 -239603919 + MIR SINE MIR 19 236 -26 1374 159 35 64 chr1 42590231 42590545 -239603119 + MLT1A1 LTR MaLR 1 305 -60 1903 136 37 10 chr1 42590599 42590893 -239602771 - AluJb SINE Alu 0 312 11 429 121 30 0 chr1 42590905 42590971 -239602693 + MLT1A1 LTR MaLR 297 364 -1 595 351 80 18 chr1 42590983 42591319 -239602345 + L2 LINE L2 2504 2860 -454 381 240 18 146 chr1 42591397 42591449 -239602215 + L2 LINE L2 2970 3027 -245 1590 209 82 3 chr1 42591449 42591765 -239601899 - MER58B DNA MER1_type 0 341 1 381 240 18 146 chr1 42591765 42591987 -239601677 + L2 LINE L2 3027 3209 -63 1230 196 136 8 chr1 42592275 42592540 -239601124 + AluJo SINE Alu 1 299 -3 2053 140 0 19 chr1 42592545 42592860 -239600804 + AluSx SINE Alu 3 311 -1 23 33 0 0 chr1 42593057 42593087 -239600577 + AT_rich Low_complexity Low_complexity 1 30 0 612 153 81 9 chr1 42593087 42593198 -239600466 - FLAM_A SINE Alu -14 119 1 1862 99 31 27 chr1 42593963 42594257 -239599407 - AluSc SINE Alu -13 296 2 1548 171 0 40 chr1 42594685 42594989 -239598675 + AluSc SINE Alu 1 292 -17 2520 67 0 13 chr1 42595208 42595523 -239598141 - AluY SINE Alu 0 311 1 1981 117 7 33 chr1 42595862 42596028 -239597636 - AluSg SINE Alu -18 292 136 2012 101 24 34 chr1 42596028 42596349 -239597315 - AluSc SINE Alu 0 309 1 1981 117 7 33 chr1 42596349 42596482 -239597182 - AluSg SINE Alu -174 136 1 2187 106 0 10 chr1 42596822 42597114 -239596550 - AluSg SINE Alu -17 293 5 2273 101 0 3 chr1 42597448 42597745 -239595919 - AluSx SINE Alu -16 296 1 964 172 35 6 chr1 42597764 42597933 -239595731 - FAM SINE Alu -1 174 1 25 0 0 0 chr1 42597937 42597962 -239595702 + AT_rich Low_complexity Low_complexity 1 25 0 399 230 30 0 chr1 42599081 42599181 -239594483 - MIR SINE MIR -72 136 34 436 217 81 131 chr1 42599966 42600091 -239593573 - MIR SINE MIR -7 255 144 2391 77 3 10 chr1 42600091 42600402 -239593262 - AluY SINE Alu -2 309 1 436 217 81 131 chr1 42600402 42600497 -239593167 - MIR SINE MIR -118 144 46 195 308 0 31 chr1 42600784 42600849 -239592815 + MIR3 SINE MIR 13 75 -133 2025 123 0 7 chr1 42601015 42601308 -239592356 + AluY SINE Alu 14 304 -7 1065 147 0 0 chr1 42601308 42601512 -239592152 + AluSg/x SINE Alu 134 312 0 969 188 12 12 chr1 42601630 42601851 -239591813 - AluSg/x SINE Alu 0 312 121 849 253 3 0 chr1 42602089 42602382 -239591282 - AluSc SINE Alu -5 294 1 908 178 12 12 chr1 42602384 42602553 -239591111 - FRAM SINE Alu -15 161 1 252 301 27 0 chr1 42603809 42603882 -239589782 - L2 LINE L2 -38 3234 3160 1602 148 76 55 chr1 42604009 42604300 -239589364 + AluJb SINE Alu 1 297 -15 2806 16 0 0 chr1 42604301 42604604 -239589060 + AluY SINE Alu 1 303 -8 207 0 0 0 chr1 42604617 42604640 -239589024 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 494 301 87 61 chr1 42604644 42604792 -239588872 + MIR SINE MIR 28 186 -76 2475 53 0 20 chr1 42604792 42605096 -239588568 + AluY SINE Alu 1 298 -13 494 301 87 61 chr1 42605096 42605176 -239588488 + MIR SINE MIR 186 262 0 883 236 0 9 chr1 42605273 42605489 -239588175 + AluSq SINE Alu 1 214 -99 271 419 0 0 chr1 42605515 42605675 -239587989 + C-rich Low_complexity Low_complexity 1 160 0 711 158 65 7 chr1 42605785 42605924 -239587740 - AluSg SINE Alu -135 175 29 330 259 166 26 chr1 42605970 42606212 -239587452 - L2 LINE L2 -225 3047 2775 329 253 55 0 chr1 42606859 42606950 -239586714 + MIR3 SINE MIR 84 179 -29 208 222 37 0 chr1 42606973 42607027 -239586637 + MIR SINE MIR 69 124 -138 684 157 60 52 chr1 42607088 42607222 -239586442 - AluJo SINE Alu -176 136 2 1682 128 39 119 chr1 42607262 42607599 -239586065 - AluJo SINE Alu -2 310 1 789 217 26 0 chr1 42607669 42607821 -239585843 + FRAM SINE Alu 2 157 -9 1961 137 7 10 chr1 42607829 42608128 -239585536 + AluSq SINE Alu 1 298 -15 296 363 0 0 chr1 42608129 42608220 -239585444 - MIR SINE MIR -171 91 1 416 271 113 0 chr1 42608688 42608821 -239584843 + MIR SINE MIR 109 256 -6 412 317 21 21 chr1 42610146 42610288 -239583376 - MIR SINE MIR -112 150 9 336 235 37 0 chr1 42610422 42610503 -239583161 + MIR3 SINE MIR 78 161 -47 1328 136 104 23 chr1 42610524 42610745 -239582919 + AluJo SINE Alu 1 239 -73 432 206 14 71 chr1 42612979 42613120 -239580544 - Alu SINE Alu -9 302 170 1776 112 7 33 chr1 42613318 42613623 -239580041 + AluY SINE Alu 5 301 -10 280 160 2 5 chr1 42614576 42614642 -239579022 + AluY SINE Alu 43 86 -222 1464 187 42 18 chr1 42615789 42616072 -239577592 + AluJo SINE Alu 2 291 -21 2219 116 7 3 chr1 42616291 42616594 -239577070 + AluSx SINE Alu 1 304 -8 2095 105 0 23 chr1 42616683 42616987 -239576677 + AluSx SINE Alu 1 297 -15 198 359 132 60 chr1 42617011 42617490 -239576174 + L2 LINE L2 2417 2929 -385 208 239 15 60 chr1 42617566 42617633 -239576031 + L2 LINE L2 3205 3268 -4 1893 62 59 18 chr1 42618043 42618348 -239575316 - AluY SINE Alu 0 316 1 1012 152 6 18 chr1 42618384 42618555 -239575109 - AluSg/x SINE Alu -24 286 118 1696 135 0 115 chr1 42618558 42618731 -239574933 - AluSx SINE Alu -1 301 184 1806 105 15 83 chr1 42618731 42619056 -239574608 - AluSx SINE Alu -7 305 3 1696 135 0 115 chr1 42619056 42619222 -239574442 - AluSx SINE Alu -118 184 1 410 279 168 24 chr1 42619584 42619659 -239574005 - MIR SINE MIR -12 250 187 2073 94 0 13 chr1 42619659 42619967 -239573697 - AluY SINE Alu -7 304 1 410 279 168 24 chr1 42619967 42620099 -239573565 - MIR SINE MIR -75 187 13 2099 116 0 6 chr1 42620100 42620411 -239573253 - AluSx SINE Alu -3 309 1 1152 197 63 8 chr1 42620588 42620827 -239572837 + MIR SINE MIR 5 256 -6 1873 95 3 42 chr1 42620827 42621139 -239572525 - AluSx SINE Alu 0 309 9 512 252 16 24 chr1 42621722 42621849 -239571815 + MIR SINE MIR 28 153 -109 308 304 106 43 chr1 42621966 42622127 -239571537 - MIR SINE MIR -10 252 82 286 208 0 0 chr1 42622965 42623013 -239570651 + MER3 DNA MER1_type 41 88 -121 648 152 0 40 chr1 42623013 42623138 -239570526 - FLAM_C SINE Alu -3 140 21 2217 108 0 6 chr1 42623182 42623497 -239570167 + AluSq SINE Alu 1 313 0 2018 134 0 0 chr1 42623513 42623811 -239569853 + AluSx SINE Alu 9 306 -6 312 259 86 0 chr1 42623980 42624061 -239569603 - MIR SINE MIR -84 178 91 295 161 94 114 chr1 42624129 42624278 -239569386 - L1ME4a LINE L1 -50 6071 5926 1345 244 3 24 chr1 42624361 42624701 -239568963 + MER46C DNA MER2_type 5 337 -1 224 279 112 115 chr1 42625015 42625442 -239568222 - L2 LINE L2 -20 3252 2827 1544 88 8 34 chr1 42625509 42625734 -239567930 - MER41A LTR ERV1 0 554 336 751 183 106 56 chr1 42625734 42626122 -239567542 - LTR7 LTR ERV1 0 450 1 3591 118 5 26 chr1 42626122 42626626 -239567038 - HERVH LTR ERV1 0 7713 7221 2258 104 0 0 chr1 42626626 42626935 -239566729 - AluY SINE Alu -2 309 1 3591 118 5 26 chr1 42626935 42626999 -239566665 - HERVH LTR ERV1 -492 7221 7157 * 6700 116 12 8 chr1 42626992 42627994 -239565670 - HERVH LTR ERV1 -1697 6016 5011 4198 150 4 10 chr1 42627992 42629024 -239564640 - HERVH LTR ERV1 -2287 4242 3357 * 12921 134 5 15 chr1 42629024 42631074 -239562590 - HERVH LTR ERV1 -4883 2830 800 1653 170 81 79 chr1 42631134 42631338 -239562326 - HERVH LTR ERV1 -7254 459 257 873 103 0 22 chr1 42631338 42631474 -239562190 - FLAM_C SINE Alu 0 133 1 1653 170 81 79 chr1 42631474 42631727 -239561937 - HERVH LTR ERV1 -7456 257 1 810 176 98 53 chr1 42631727 42632116 -239561548 - LTR7 LTR ERV1 0 450 1 2265 127 3 6 chr1 42632116 42632454 -239561210 - MER41A LTR ERV1 -217 337 1 12843 96 17 21 chr1 42632454 42633047 -239560617 - MER41A-int LTR ERV1 -3 5943 5349 2006 138 0 22 chr1 42633047 42633366 -239560298 - AluSx SINE Alu 0 312 1 12843 96 17 21 chr1 42633366 42634514 -239559150 - MER41A-int LTR ERV1 -597 5349 4198 1890 120 0 24 chr1 42634514 42634828 -239558836 - AluSx SINE Alu 0 307 1 12843 96 17 21 chr1 42634828 42635057 -239558607 - MER41A-int LTR ERV1 -1748 4198 3970 2092 90 3 13 chr1 42635057 42635357 -239558307 - AluSp SINE Alu -16 297 1 12843 96 17 21 chr1 42635357 42635600 -239558064 - MER41A-int LTR ERV1 -1976 3970 3728 1917 138 6 10 chr1 42635600 42635911 -239557753 - AluSg SINE Alu 0 310 1 12843 96 17 21 chr1 42635911 42635981 -239557683 - MER41A-int LTR ERV1 -2218 3728 2856 621 74 0 21 chr1 42635968 42636063 -239557601 - MER41A-int LTR ERV1 -3000 2946 2854 * 800 163 72 13 chr1 42636064 42636217 -239557447 - AluSg/x SINE Alu -17 295 134 2259 70 0 10 chr1 42636217 42636515 -239557149 - AluY SINE Alu -16 295 1 2696 92 8 8 chr1 42636515 42636897 -239556767 - MER41A LTR ERV1 -172 382 1 1469 172 46 40 chr1 42636954 42637141 -239556523 - AluJb SINE Alu -3 309 118 1887 106 0 0 chr1 42637141 42637397 -239556267 + AluSp SINE Alu 36 291 -22 1469 172 46 40 chr1 42637397 42637512 -239556152 - AluJb SINE Alu -194 118 5 1771 134 3 17 chr1 42637677 42637975 -239555689 + AluSx SINE Alu 1 294 -18 429 250 29 0 chr1 42638612 42638716 -239554948 - MIR SINE MIR -62 146 40 268 307 26 26 chr1 42638746 42638860 -239554804 - L2 LINE L2 -52 3261 3148 2028 115 0 19 chr1 42638867 42639179 -239554485 + AluSg SINE Alu 5 310 0 1080 153 0 22 chr1 42639179 42639362 -239554302 + AluSg/x SINE Alu 134 312 0 2242 98 3 0 chr1 42639422 42639727 -239553937 + AluSg SINE Alu 1 306 -4 1069 131 0 28 chr1 42639727 42639903 -239553761 + AluSg/x SINE Alu 134 304 -8 2133 82 14 3 chr1 42639963 42640257 -239553407 + AluY SINE Alu 1 297 -14 319 245 112 0 chr1 42640301 42640399 -239553265 + MER119 DNA MER1_type 427 535 -48 737 281 18 18 chr1 42640415 42640689 -239552975 - AluSp SINE Alu -28 285 12 1462 132 143 12 chr1 42691688 42691946 -239501718 - AluY SINE Alu -19 292 1 180 197 91 61 chr1 42694023 42694089 -239499575 + MIR SINE MIR 16 83 -125 384 103 0 0 chr1 42694130 42694188 -239499476 + (TG)n Simple_repeat Simple_repeat 2 59 0 205 338 0 0 chr1 42696527 42696598 -239497066 - MIR SINE MIR -116 146 76 2192 107 0 16 chr1 42697124 42697441 -239496223 + AluSx SINE Alu 1 312 0 1912 93 0 46 chr1 42697443 42697588 -239496076 + AluSx SINE Alu 1 128 -184 1883 110 88 4 chr1 42697588 42697861 -239495803 + AluSx SINE Alu 1 296 -16 1912 93 0 46 chr1 42697861 42697995 -239495669 + AluSx SINE Alu 128 267 -45 2037 152 0 3 chr1 42698254 42698557 -239495107 - AluJo SINE Alu -8 304 3 2243 85 6 16 chr1 42698576 42698892 -239494772 - AluSq SINE Alu 0 313 1 234 286 14 14 chr1 42699533 42699603 -239494061 + (CTGGGG)n Simple_repeat Simple_repeat 2 71 0 330 265 0 24 chr1 42700604 42700687 -239492977 - MIR SINE MIR -60 148 68 1604 152 4 36 chr1 42700877 42701154 -239492510 + AluJo SINE Alu 1 268 -44 477 244 17 0 chr1 42701454 42701630 -239492034 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 232 284 53 11 chr1 42702010 42702105 -239491559 + L2 LINE L2 2956 3054 -218 279 378 0 22 chr1 42702231 42702366 -239491298 + MIR SINE MIR 66 197 -65 959 277 24 8 chr1 42702459 42702712 -239490952 - MIR SINE MIR -4 258 2 392 297 80 22 chr1 42703107 42703327 -239490337 + MIR SINE MIR 28 256 -6 2152 102 0 31 chr1 42703391 42703713 -239489951 + AluSx SINE Alu 1 312 0 639 322 44 0 chr1 42703732 42703937 -239489727 - MIR SINE MIR -41 221 8 204 179 0 0 chr1 42704952 42704991 -239488673 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 206 286 0 0 chr1 42705113 42705162 -239488502 + (TG)n Simple_repeat Simple_repeat 2 50 0 327 49 0 0 chr1 42705658 42705699 -239487965 + (TG)n Simple_repeat Simple_repeat 1 41 0 312 27 0 0 chr1 42705698 42705735 -239487929 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 29 28 0 0 chr1 42709155 42709191 -239484473 + AT_rich Low_complexity Low_complexity 1 36 0 207 125 0 0 chr1 42709783 42709823 -239483841 + (T)n Simple_repeat Simple_repeat 1 40 0 29 0 0 0 chr1 42710552 42710581 -239483083 + GC_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 42710625 42710655 -239483009 + GC_rich Low_complexity Low_complexity 1 30 0 23 86 0 0 chr1 42711223 42711281 -239482383 + GC_rich Low_complexity Low_complexity 1 58 0 205 154 0 58 chr1 42711390 42711442 -239482222 + (CCG)n Simple_repeat Simple_repeat 2 50 0 201 159 0 0 chr1 42711608 42711652 -239482012 + (CCG)n Simple_repeat Simple_repeat 2 45 0 246 32 0 0 chr1 42711824 42711855 -239481809 + (CCG)n Simple_repeat Simple_repeat 3 33 0 292 175 10 125 chr1 42711942 42712142 -239481522 + (CCCCG)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr1 42712250 42712271 -239481393 + GC_rich Low_complexity Low_complexity 1 21 0 198 372 21 84 chr1 42714005 42714196 -239479468 + MIR SINE MIR 46 224 -38 333 250 29 100 chr1 42714215 42714355 -239479309 + MIR3 SINE MIR 79 208 0 515 108 0 32 chr1 42714464 42714557 -239479107 - L1PA8 LINE L1 0 6172 6083 208 276 218 35 chr1 42714582 42714669 -239478995 - MIR SINE MIR -88 174 72 399 331 32 18 chr1 42714889 42715053 -239478611 + MIR SINE MIR 41 205 -57 252 0 0 0 chr1 42715449 42715477 -239478187 + (CA)n Simple_repeat Simple_repeat 1 28 0 250 296 153 6 chr1 42716892 42717074 -239476590 + MIR3 SINE MIR 18 216 -41 222 37 0 0 chr1 42717898 42717925 -239475739 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1170 96 0 0 chr1 42720146 42720347 -239473317 - AluY SINE Alu 0 329 129 622 319 94 49 chr1 42720399 42720804 -239472860 + L2 LINE L2 2844 3266 -6 197 288 197 15 chr1 42720927 42721059 -239472605 + L3 LINE CR1 526 681 -896 778 216 11 16 chr1 42721675 42721865 -239471799 - MIR SINE MIR 0 262 74 2088 118 7 0 chr1 42721981 42722286 -239471378 - AluSq SINE Alu -6 307 1 248 273 101 0 chr1 42722368 42722467 -239471197 - L1M1 LINE L1 -491 5813 5705 282 352 212 5 chr1 42722478 42722671 -239470993 + L3 LINE CR1 1282 1514 -63 239 157 78 20 chr1 42722774 42722815 -239470849 + MIR SINE MIR 106 149 -113 418 284 54 14 chr1 42722815 42722963 -239470701 + MIR SINE MIR 1 154 -108 1752 143 7 25 chr1 42722985 42723271 -239470393 - AluJo SINE Alu -26 286 6 2228 83 0 20 chr1 42723306 42723608 -239470056 - AluSx SINE Alu -16 296 1 806 285 92 38 chr1 42723639 42724119 -239469545 - L2 LINE L2 -54 3259 2760 188 234 21 0 chr1 42724118 42724165 -239469499 + MIR SINE MIR 154 201 -61 * 1528 269 70 15 chr1 42724165 42724623 -239469041 - LTR16C LTR ERVL -7 484 2 256 161 62 74 chr1 42724741 42724822 -239468842 - MIR SINE MIR 0 262 183 722 257 33 9 chr1 42725820 42726034 -239467630 - MIR SINE MIR -29 233 15 409 284 142 16 chr1 42725982 42726165 -239467499 + MIR SINE MIR 46 251 -11 * 267 31 0 0 chr1 42726452 42726484 -239467180 + (TG)n Simple_repeat Simple_repeat 2 33 0 468 272 9 0 chr1 42726588 42726702 -239466962 - L2 LINE L2 -293 3020 2906 334 143 171 0 chr1 42726790 42726860 -239466804 - L2 LINE L2 0 3272 3191 294 244 37 12 chr1 42726856 42726938 -239466726 - MIR SINE MIR -21 241 158 * 278 184 0 0 chr1 42727770 42727819 -239465845 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 627 108 0 0 chr1 42727821 42727932 -239465732 + (TTCC)n Simple_repeat Simple_repeat 1 111 0 1934 110 59 3 chr1 42728444 42728734 -239464930 + AluSq SINE Alu 1 306 -7 247 229 59 34 chr1 42728985 42729103 -239464561 + GA-rich Low_complexity Low_complexity 4 124 0 1089 252 17 58 chr1 42729584 42729979 -239463685 + LTR16A LTR ERVL 1 393 -64 313 207 98 0 chr1 42730696 42730778 -239462886 + MIR SINE MIR 9 98 -164 530 277 57 110 chr1 42731506 42731618 -239462046 + L2 LINE L2 2556 2672 -641 1442 196 65 7 chr1 42731618 42731924 -239461740 + MER33 DNA MER1_type 1 324 0 530 277 57 110 chr1 42731924 42732019 -239461645 + L2 LINE L2 2672 2770 -543 2120 121 3 3 chr1 42732019 42732325 -239461339 - AluSx SINE Alu -6 306 1 892 182 0 40 chr1 42732327 42732503 -239461161 - FAM SINE Alu -3 172 4 530 277 57 110 chr1 42732503 42732835 -239460829 + L2 LINE L2 2771 3069 -244 393 290 16 32 chr1 42732915 42733039 -239460625 - MIR3 SINE MIR -2 206 85 474 294 142 28 chr1 42733050 42733268 -239460396 - MIR SINE MIR 0 262 20 354 156 0 0 chr1 42733959 42734023 -239459641 + (TG)n Simple_repeat Simple_repeat 2 65 0 210 128 0 0 chr1 42734027 42734066 -239459598 + (GA)n Simple_repeat Simple_repeat 1 39 0 880 182 39 5 chr1 42734294 42734480 -239459184 - MER63B DNA MER1_type -9 1053 7 2052 129 0 10 chr1 42734536 42734845 -239458819 - AluJb SINE Alu -6 306 1 747 251 91 37 chr1 42734952 42735195 -239458469 - MIR SINE MIR -1 261 6 210 319 120 37 chr1 42735227 42735443 -239458221 + L2 LINE L2 3033 3266 -6 1052 268 85 42 chr1 42735549 42736020 -239457644 - L2 LINE L2 -6 3307 2817 459 283 94 47 chr1 42737019 42737231 -239456433 - MIR SINE MIR -6 256 35 392 372 7 7 chr1 42737502 42737639 -239456025 + L2 LINE L2 3136 3272 0 236 421 6 6 chr1 42737788 42737947 -239455717 + (CCCCAG)n Simple_repeat Simple_repeat 6 164 0 * 375 333 14 7 chr1 42737844 42737991 -239455673 + (CCCCAA)n Simple_repeat Simple_repeat 2 149 0 806 271 61 20 chr1 42738669 42739133 -239454531 - LTR33 LTR ERVL -7 514 3 228 284 0 0 chr1 42739169 42739236 -239454428 + GA-rich Low_complexity Low_complexity 1 67 0 385 247 31 13 chr1 42739652 42739764 -239453900 - MIR SINE MIR -63 145 40 818 264 44 3 chr1 42739982 42740220 -239453444 - MIR SINE MIR -13 249 3 1944 124 0 0 chr1 42740273 42740548 -239453116 + AluSg SINE Alu 1 275 -35 258 337 21 0 chr1 42741244 42741339 -239452325 + MIR3 SINE MIR 82 178 -30 212 362 32 0 chr1 42741540 42741634 -239452030 - MIR SINE MIR -17 245 149 703 306 113 62 chr1 42742418 42742994 -239450670 - L3 LINE CR1 -46 1531 927 787 254 22 107 chr1 42743006 42743261 -239450403 + MLT1I LTR MaLR 73 289 -120 2274 104 3 0 chr1 42743261 42743570 -239450094 - AluSq SINE Alu -3 310 1 787 254 22 107 chr1 42743570 42743680 -239449984 + MLT1I LTR MaLR 289 407 -2 287 337 171 10 chr1 42743958 42744157 -239449507 + MIR SINE MIR 31 261 -1 364 229 176 15 chr1 42744744 42744925 -239448739 - MIR SINE MIR -6 256 19 1181 117 0 11 chr1 42744927 42745107 -239448557 - AluSg/x SINE Alu -1 309 132 2250 85 0 16 chr1 42745107 42745414 -239448250 - AluY SINE Alu -9 302 1 2086 119 3 13 chr1 42745468 42745771 -239447893 - AluSq SINE Alu -13 300 1 364 302 10 10 chr1 42746234 42746317 -239447347 + L1MC4 LINE L1 6614 6699 -1343 2075 104 0 3 chr1 42746317 42746605 -239447059 - AluSx SINE Alu -25 287 1 364 302 10 10 chr1 42746605 42746617 -239447047 + L1MC4 LINE L1 6698 6709 -1333 374 268 173 0 chr1 42746639 42746766 -239446898 + MIR SINE MIR 112 260 -2 397 226 84 39 chr1 42746770 42746925 -239446739 - MIR SINE MIR 0 262 101 810 174 0 0 chr1 42746925 42747063 -239446601 + FLAM_C SINE Alu 1 138 -5 346 289 0 10 chr1 42747074 42747178 -239446486 - MIR SINE MIR -93 115 13 415 263 25 93 chr1 42747209 42747337 -239446327 - MIR SINE MIR 0 262 156 1966 125 0 44 chr1 42747337 42747658 -239446006 - AluSx SINE Alu -5 307 1 415 263 25 93 chr1 42747658 42747765 -239445899 - MIR SINE MIR -106 156 43 2120 135 0 0 chr1 42750358 42750669 -239442995 + AluSx SINE Alu 1 311 -1 319 262 48 0 chr1 42750739 42750823 -239442841 - MIR SINE MIR -71 191 104 210 241 69 0 chr1 42751561 42751619 -239442045 - L2 LINE L2 -92 3221 3160 1034 217 18 9 chr1 42751650 42751871 -239441793 - MIR SINE MIR 0 262 40 1917 115 52 11 chr1 42751873 42752160 -239441504 - AluSx SINE Alu -9 303 5 188 299 225 27 chr1 42752240 42752427 -239441237 - L2 LINE L2 -553 2761 2538 271 309 105 20 chr1 42752708 42752860 -239440804 + MIR SINE MIR 23 187 -75 373 324 15 15 chr1 42753185 42753321 -239440343 - L2 LINE L2 0 3272 3137 591 282 68 13 chr1 42753548 42753782 -239439882 - L2 LINE L2 -417 2897 2651 296 337 6 17 chr1 42754594 42754624 -239439040 + (TG)n Simple_repeat Simple_repeat 2 31 -149 1497 123 0 0 chr1 42754624 42754836 -239438828 - AluSq SINE Alu -101 212 1 296 337 6 17 chr1 42754836 42754986 -239438678 + (TG)n Simple_repeat Simple_repeat 31 180 0 330 294 0 0 chr1 42755053 42755155 -239438509 + (TG)n Simple_repeat Simple_repeat 1 102 0 216 332 34 71 chr1 42755731 42755999 -239437665 - L2 LINE L2 -741 2573 2316 230 268 18 0 chr1 42756410 42756466 -239437198 - L2 LINE L2 -93 3179 3123 309 125 0 0 chr1 42756490 42756538 -239437126 + L2 LINE L2 3264 3311 -2 369 278 160 31 chr1 42756606 42756943 -239436721 - L2 LINE L2 -213 3059 2685 186 282 35 35 chr1 42756877 42756962 -239436702 + L3 LINE CR1 1442 1526 -51 * 1669 130 0 87 chr1 42757046 42757368 -239436296 - AluJo SINE Alu -7 305 12 282 402 0 0 chr1 42757405 42757532 -239436132 + MIR3 SINE MIR 28 154 -54 906 247 65 73 chr1 42758167 42758616 -239435048 - L1ME4a LINE L1 -16 6105 5661 244 228 6 177 chr1 42758616 42758774 -239434890 - L2 LINE L2 -3 3310 3180 253 282 83 39 chr1 42758914 42759070 -239434594 - L2 LINE L2 -167 3105 2943 331 286 36 0 chr1 42759097 42759209 -239434455 - L1ME4a LINE L1 -452 5669 5554 201 273 109 0 chr1 42761282 42761337 -239432327 - MIR SINE MIR -112 150 90 2062 116 0 0 chr1 42761663 42761998 -239431666 - AluSx SINE Alu 0 312 9 275 177 165 13 chr1 42762019 42762098 -239431566 + MIR SINE MIR 79 169 -93 236 162 0 15 chr1 42762303 42762371 -239431293 + GA-rich Low_complexity Low_complexity 2 68 0 235 228 0 0 chr1 42763290 42763347 -239430317 + (TG)n Simple_repeat Simple_repeat 2 58 0 334 295 14 7 chr1 42763619 42763758 -239429906 + (TG)n Simple_repeat Simple_repeat 2 141 0 753 228 13 80 chr1 42763906 42764143 -239429521 + L2 LINE L2 3093 3313 0 388 273 43 151 chr1 42764154 42764230 -239429434 + L2 LINE L2 3000 3083 -230 1964 45 0 16 chr1 42764230 42764472 -239429192 + AluY SINE Alu 56 293 -18 388 273 43 151 chr1 42764472 42764569 -239429095 + L2 LINE L2 3083 3189 -124 2019 133 7 0 chr1 42764569 42764878 -239428786 - AluSx SINE Alu -1 311 1 388 273 43 151 chr1 42764878 42765055 -239428609 + L2 LINE L2 3189 3313 0 1846 154 0 16 chr1 42765156 42765468 -239428196 - AluSx SINE Alu -5 307 1 391 291 24 16 chr1 42766394 42766521 -239427143 + MIR SINE MIR 60 187 -75 273 266 115 9 chr1 42766549 42766662 -239427002 + L3 LINE CR1 839 963 -614 473 260 199 17 chr1 42766807 42766988 -239426676 - MIR SINE MIR -13 249 36 618 312 202 12 chr1 42767013 42767503 -239426161 + L3 LINE CR1 444 1026 -551 401 278 184 14 chr1 42768527 42768739 -239424925 - MIR SINE MIR -12 250 3 595 253 19 12 chr1 42769161 42769323 -239424341 + MIR3 SINE MIR 19 181 -27 222 353 0 0 chr1 42769386 42769454 -239424210 - MIR3 SINE MIR -6 202 135 504 312 101 76 chr1 42769506 42769615 -239424049 - L2 LINE L2 -337 2977 2872 2198 114 37 0 chr1 42769615 42769912 -239423752 + AluSx SINE Alu 1 308 -4 504 312 101 76 chr1 42769912 42770447 -239423217 - L2 LINE L2 -442 2872 2317 253 170 0 0 chr1 42770459 42770506 -239423158 - L2 LINE L2 -2 3311 3265 2131 118 6 29 chr1 42770807 42771120 -239422544 - AluSg SINE Alu -4 306 1 931 199 55 0 chr1 42771184 42771365 -239422299 - MER63A DNA MER1_type -10 200 10 656 262 29 49 chr1 42771647 42771891 -239421773 + MIR SINE MIR 17 255 -7 225 65 0 0 chr1 42772423 42772454 -239421210 + (TG)n Simple_repeat Simple_repeat 1 31 0 266 184 0 0 chr1 42772486 42772535 -239421129 + MIR SINE MIR 74 122 -140 329 307 176 29 chr1 42772932 42773245 -239420419 + MLT1K LTR MaLR 184 542 -46 243 0 0 0 chr1 42773577 42773604 -239420060 + (TA)n Simple_repeat Simple_repeat 1 27 0 319 344 87 22 chr1 42773670 42773853 -239419811 - MIR SINE MIR -60 202 8 546 319 107 30 chr1 42773938 42774692 -239418972 + L1ME4a LINE L1 4041 4904 -1242 1825 174 3 7 chr1 42774692 42774990 -239418674 - AluJb SINE Alu -15 297 1 546 319 107 30 chr1 42774990 42775314 -239418350 + L1ME4a LINE L1 4904 5202 -944 465 66 0 0 chr1 42775318 42775379 -239418285 + (TA)n Simple_repeat Simple_repeat 1 61 0 1409 294 74 34 chr1 42775402 42776226 -239417438 + L1ME4a LINE L1 5265 6121 0 408 279 101 6 chr1 42776918 42777097 -239416567 - MER117 DNA MER1_type -1 196 1 239 305 199 36 chr1 42777456 42777787 -239415877 + L3 LINE CR1 818 1202 -375 428 183 108 11 chr1 42777928 42778021 -239415643 - MER103 DNA DNA -62 104 3 381 304 83 28 chr1 42778071 42778288 -239415376 + L3 LINE CR1 1274 1502 -75 235 286 0 0 chr1 42779805 42779854 -239413810 + polypyrimidine Low_complexity Low_complexity 1 49 0 241 346 8 8 chr1 42780483 42780616 -239413048 + (TG)n Simple_repeat Simple_repeat 2 134 0 213 94 0 0 chr1 42780816 42780848 -239412816 + (TG)n Simple_repeat Simple_repeat 2 33 0 342 304 118 0 chr1 42781482 42781617 -239412047 + MIR SINE MIR 17 167 -95 2321 85 4 0 chr1 42781691 42781972 -239411692 + AluSq SINE Alu 1 282 -31 180 0 0 0 chr1 42781975 42781995 -239411669 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 569 264 21 0 chr1 42782114 42782258 -239411406 + MER117 DNA MER1_type 4 150 -47 361 269 184 0 chr1 42782304 42782445 -239411219 + MIR SINE MIR 20 186 -76 199 309 131 0 chr1 42782494 42782578 -239411086 - MIR SINE MIR -72 190 96 252 195 11 35 chr1 42783825 42783912 -239409752 + CT-rich Low_complexity Low_complexity 3 87 0 203 135 0 77 chr1 42784670 42784722 -239408942 + (TAAAAA)n Simple_repeat Simple_repeat 3 50 0 295 214 57 0 chr1 42784947 42785017 -239408647 + MIR SINE MIR 109 182 -80 2102 113 50 0 chr1 42785039 42785321 -239408343 + AluSg SINE Alu 1 296 -14 585 42 0 0 chr1 42785321 42785392 -239408272 - AluS SINE Alu -219 94 24 1618 114 0 0 chr1 42785392 42785602 -239408062 + AluSg/x SINE Alu 99 308 -2 1380 220 78 29 chr1 42785646 42786316 -239407348 + L2 LINE L2 2521 3313 0 385 120 67 0 chr1 42787138 42787213 -239406451 + MADE1 DNA Mariner 1 80 0 200 194 0 0 chr1 42787213 42787249 -239406415 + T-rich Low_complexity Low_complexity 4 39 0 429 141 74 99 chr1 42787405 42787469 -239406195 - Charlie4 DNA MER1_type -3 1958 1897 1895 155 3 38 chr1 42787469 42787786 -239405878 - AluJo SINE Alu -2 310 5 429 141 74 99 chr1 42787786 42787842 -239405822 - Charlie4 DNA MER1_type -64 1897 1841 198 222 97 14 chr1 42788080 42788152 -239405512 + L3 LINE CR1 1412 1489 -88 337 268 64 51 chr1 42788629 42788786 -239404878 - MIR3 SINE MIR -32 176 18 651 249 12 24 chr1 42789977 42790142 -239403522 + MER5B DNA MER1_type 13 175 -3 558 259 35 12 chr1 42790165 42790335 -239403329 + MER5A DNA MER1_type 10 183 -6 186 118 0 29 chr1 42790375 42790409 -239403255 + MER5A DNA MER1_type 133 165 -24 691 152 0 0 chr1 42790409 42790521 -239403143 - MER5A DNA MER1_type -77 112 1 206 240 0 40 chr1 42790538 42790613 -239403051 + GA-rich Low_complexity Low_complexity 3 74 0 242 279 13 25 chr1 42793307 42793386 -239400278 + GA-rich Low_complexity Low_complexity 6 83 0 2040 142 10 0 chr1 42793476 42793771 -239399893 + AluJo SINE Alu 1 298 -14 452 297 64 29 chr1 42795201 42795566 -239398098 - LTR33 LTR ERVL -92 429 17 251 311 142 16 chr1 42795580 42795763 -239397901 - MIR SINE MIR -1 261 56 720 207 71 0 chr1 42796576 42796764 -239396900 - MIR SINE MIR -6 256 46 356 277 127 60 chr1 42797033 42797434 -239396230 - L2 LINE L2 -460 2854 2427 1872 150 24 0 chr1 42797793 42798080 -239395584 - AluSx SINE Alu -18 294 1 596 276 33 6 chr1 42798125 42798306 -239395358 + MIR SINE MIR 11 196 -66 208 242 0 30 chr1 42799202 42799268 -239394396 + G-rich Low_complexity Low_complexity 4 67 0 636 56 83 0 chr1 42799367 42799475 -239394189 + GA-rich Low_complexity Low_complexity 1 117 0 236 29 0 29 chr1 42801269 42801303 -239392361 + (TC)n Simple_repeat Simple_repeat 1 33 0 533 322 61 37 chr1 42802199 42802525 -239391139 + L2 LINE L2 2896 3229 -43 236 321 74 43 chr1 42804459 42804621 -239389043 + MIR3 SINE MIR 17 183 -25 209 194 0 0 chr1 42804674 42804710 -239388954 + MIR SINE MIR 118 153 -109 1385 242 180 28 chr1 42805955 42806675 -239386989 + L2 LINE L2 2312 3124 -189 1200 249 78 17 chr1 42806712 42807122 -239386542 - LTR16A LTR ERVL 0 450 16 561 196 30 65 chr1 42807171 42807193 -239386471 + L2 LINE L2 3152 3173 -140 2055 129 14 0 chr1 42807193 42807492 -239386172 + AluSx SINE Alu 3 305 0 561 196 30 65 chr1 42807492 42807636 -239386028 + L2 LINE L2 3173 3313 0 605 291 16 15 chr1 42807684 42807896 -239385768 + MIR SINE MIR 49 262 0 216 264 212 43 chr1 42808255 42808486 -239385178 + L2 LINE L2 1780 2049 -1265 601 301 25 42 chr1 42808691 42808927 -239384737 + LTR16A LTR ERVL 218 449 -1 2085 291 32 15 chr1 42808931 42809584 -239384080 + HERV16 LTR ERVL 1 664 -4332 2879 69 67 9 chr1 42809595 42809975 -239383689 + MLT2A1 LTR ERVL 1 409 -35 230 56 28 0 chr1 42809975 42810011 -239383653 + (TA)n Simple_repeat Simple_repeat 2 38 0 2879 69 67 9 chr1 42810011 42810050 -239383614 + MLT2A1 LTR ERVL 409 444 0 44494 60 5 2 chr1 42810050 42815690 -239377974 + HERVL-A1-A1 LTR ERVL 1 5654 0 2926 69 46 21 chr1 42815690 42816123 -239377541 + MLT2A1 LTR ERVL 1 444 0 319 213 0 0 chr1 42816214 42816275 -239377389 + HERV16 LTR ERVL 747 807 -4189 243 301 108 23 chr1 42816338 42816514 -239377150 + L2 LINE L2 2596 2786 -528 367 315 58 52 chr1 42816702 42817010 -239376654 + LTR16A LTR ERVL 18 327 -123 765 260 132 37 chr1 42817162 42817606 -239376058 - MLT1H LTR MaLR 0 567 34 1590 253 46 0 chr1 42818063 42818454 -239375210 + MLT1I LTR MaLR 1 409 0 793 332 106 19 chr1 42819169 42819807 -239373857 + L2 LINE L2 2576 3255 -58 242 304 0 0 chr1 42820202 42820258 -239373406 + polypyrimidine Low_complexity Low_complexity 2 57 0 673 223 86 17 chr1 42820686 42820861 -239372803 - MLT1J2 LTR MaLR 0 450 264 2680 327 83 15 chr1 42821234 42823480 -239370184 + HERV16 LTR ERVL 1250 3662 -1926 1976 302 93 73 chr1 42823573 42824742 -239368922 + ERVL LTR ERVL 3483 5028 -531 689 290 42 34 chr1 42824928 42825190 -239368474 - L2 LINE L2 -540 2774 2511 303 229 33 0 chr1 42826118 42826179 -239367485 + L2 LINE L2 3242 3304 -9 915 253 34 0 chr1 42826518 42826751 -239366913 + MIR SINE MIR 12 252 -10 309 257 105 57 chr1 42826854 42827006 -239366658 - MIR3 SINE MIR -66 142 14 270 291 261 8 chr1 42827403 42827537 -239366127 + MIR3 SINE MIR 33 200 -8 1214 174 9 48 chr1 42828182 42828299 -239365365 + MER58A DNA MER1_type 4 109 -2311 2048 122 3 3 chr1 42828299 42828611 -239365053 - AluSx SINE Alu 0 312 1 1214 174 9 48 chr1 42828611 42828723 -239364941 + MER58A DNA MER1_type 109 224 0 799 266 31 18 chr1 42828816 42829045 -239364619 - MIR SINE MIR 0 262 31 310 277 180 2 chr1 42829049 42829214 -239364450 - MIR3 SINE MIR -19 189 1 287 319 71 0 chr1 42829300 42829413 -239364251 + L2 LINE L2 522 642 -2672 663 308 176 41 chr1 42829586 42830408 -239363256 + L2 LINE L2 1684 2616 -698 1095 278 92 36 chr1 42830414 42830987 -239362677 - L2 LINE L2 -1 3312 2667 1962 118 33 10 chr1 42830987 42831292 -239362372 + AluSx SINE Alu 1 312 0 1095 278 92 36 chr1 42831292 42831519 -239362145 - L2 LINE L2 -646 2667 2454 437 234 45 0 chr1 42831950 42832061 -239361603 + MIR SINE MIR 69 184 -78 1202 223 45 57 chr1 42832392 42832706 -239360958 - MER102b DNA MER1_type -25 316 7 195 184 0 0 chr1 42832968 42833006 -239360658 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 2220 70 0 3 chr1 42833105 42833414 -239360250 + AluY SINE Alu 1 308 0 231 269 77 13 chr1 42833519 42833597 -239360067 - L2 LINE L2 -213 3059 2977 1898 191 87 3 chr1 42833658 42834050 -239359614 + MLT2B1 LTR ERVL 3 427 -93 235 239 60 0 chr1 42834805 42834872 -239358792 + L1ME4a LINE L1 5730 5800 -321 224 30 30 0 chr1 42834932 42834965 -239358699 + (CA)n Simple_repeat Simple_repeat 2 35 0 552 145 0 51 chr1 42834967 42835084 -239358580 + L1ME4a LINE L1 5964 6074 -47 202 184 0 0 chr1 42835084 42835113 -239358551 + CT-rich Low_complexity Low_complexity 4 35 -6 1795 110 99 0 chr1 42835113 42835395 -239358269 - AluSp SINE Alu -3 310 1 258 273 13 26 chr1 42836425 42836502 -239357162 + L3 LINE CR1 1176 1251 -326 230 298 101 62 chr1 42836808 42836986 -239356678 + MLT1K LTR MaLR 247 431 -157 1041 274 92 57 chr1 42837318 42837828 -239355836 - MLT1G1 LTR MaLR 0 595 68 277 255 157 20 chr1 42837950 42838052 -239355612 - MIR SINE MIR -47 215 100 2068 106 10 7 chr1 42838089 42838392 -239355272 + AluSx SINE Alu 1 304 -8 281 286 55 0 chr1 42838432 42838523 -239355141 - MIR3 SINE MIR -15 193 98 237 302 94 27 chr1 42838530 42838679 -239354985 - MLT1L LTR MaLR -41 574 416 703 228 178 18 chr1 42838860 42839079 -239354585 - MLT1L LTR MaLR -361 254 1 288 203 17 0 chr1 42839219 42839278 -239354386 + MLT1K LTR MaLR 525 584 -4 591 254 60 0 chr1 42839452 42839586 -239354078 - MER117 DNA MER1_type -50 147 6 230 319 55 0 chr1 42839614 42839705 -239353959 + MIR3 SINE MIR 98 193 -15 558 316 56 12 chr1 42839984 42840234 -239353430 + MIR SINE MIR 2 262 0 192 289 139 48 chr1 42840428 42840636 -239353028 + L3 LINE CR1 1092 1318 -259 235 241 0 0 chr1 42842062 42842120 -239351544 + (TA)n Simple_repeat Simple_repeat 1 58 0 313 279 135 9 chr1 42842377 42842488 -239351176 + L2 LINE L2 3148 3272 0 1770 94 116 4 chr1 42842615 42842891 -239350773 - AluSc SINE Alu -2 307 1 1892 75 0 0 chr1 42842968 42843209 -239350455 - AluSq SINE Alu -5 308 68 2072 89 0 0 chr1 42843266 42843535 -239350129 - AluY SINE Alu -15 296 28 1831 152 0 31 chr1 42843965 42844287 -239349377 + AluJb SINE Alu 1 312 0 1108 253 80 25 chr1 42844641 42845064 -239348600 + LTR16A LTR ERVL 2 450 0 1171 249 129 21 chr1 42845549 42845571 -239348093 + LTR33A LTR ERVL 60 78 -445 2527 140 3 3 chr1 42845571 42845935 -239347729 + THE1B LTR MaLR 1 364 0 1171 249 129 21 chr1 42845935 42846330 -239347334 + LTR33A LTR ERVL 78 522 -1 1876 122 43 0 chr1 42846548 42846826 -239346838 - AluSq SINE Alu -23 290 1 1880 108 0 0 chr1 42846909 42847168 -239346496 - AluSx SINE Alu -16 296 38 238 363 0 0 chr1 42847413 42847504 -239346160 + MIR SINE MIR 166 256 -6 1747 136 0 0 chr1 42847573 42847838 -239345826 + AluY SINE Alu 36 300 -11 727 287 79 3 chr1 42848650 42848978 -239344686 - L1MC4 LINE L1 0 8042 7690 1370 169 60 11 chr1 42849059 42849326 -239344338 + AluJo SINE Alu 27 306 -6 363 280 0 47 chr1 42849346 42849539 -239344125 - L1MC5 LINE L1 -476 7485 7302 195 372 132 0 chr1 42849635 42849764 -239343900 - MIR SINE MIR -6 256 111 246 283 117 33 chr1 42849846 42849966 -239343698 - MIR SINE MIR -61 147 18 253 244 71 9 chr1 42850308 42850413 -239343251 - MIR SINE MIR -76 132 25 1365 165 41 19 chr1 42850631 42850897 -239342767 - AluSx SINE Alu -4 308 37 310 259 92 46 chr1 42850948 42851122 -239342542 + L2 LINE L2 2557 2738 -576 351 217 249 118 chr1 42851126 42851571 -239342093 - MLT1H LTR MaLR 0 549 1 343 360 43 0 chr1 42851709 42851848 -239341816 + L2 LINE L2 2912 3056 -216 433 317 39 39 chr1 42851950 42852055 -239341609 + MIR SINE MIR 14 121 -141 1902 158 0 0 chr1 42852055 42852365 -239341299 - AluJb SINE Alu -2 310 1 433 317 39 39 chr1 42852365 42852467 -239341197 + MIR SINE MIR 120 221 -41 328 318 18 0 chr1 42853495 42853605 -239340059 + GA-rich Low_complexity Low_complexity 1 112 0 614 298 6 6 chr1 42853659 42853817 -239339847 + MIR SINE MIR 7 164 -98 1719 233 82 37 chr1 42853819 42854340 -239339324 - MLT1E LTR MaLR 0 593 1 604 300 90 0 chr1 42854374 42854574 -239339090 - MIR SINE MIR -39 223 6 2119 177 33 77 chr1 42854892 42855055 -239338609 - MLT1D LTR MaLR -7 498 329 1947 143 0 0 chr1 42855055 42855356 -239338308 + AluSx SINE Alu 1 301 -11 2119 177 33 77 chr1 42855356 42855713 -239337951 - MLT1D LTR MaLR -176 329 1 213 264 38 0 chr1 42856111 42856164 -239337500 - MER91A DNA MER1_type -134 62 8 * 232 312 0 26 chr1 42856154 42856231 -239337433 + L2 LINE L2 3232 3306 -7 257 258 90 0 chr1 42857178 42857267 -239336397 + MIR SINE MIR 153 249 -13 403 277 22 36 chr1 42857281 42857418 -239336246 - MIR SINE MIR -12 250 116 186 189 27 0 chr1 42857497 42857534 -239336130 + L2 LINE L2 3269 3306 -7 1100 158 0 0 chr1 42857682 42857847 -239335817 + FRAM SINE Alu 2 166 0 355 250 89 26 chr1 42857867 42858033 -239335631 - MIR SINE MIR -65 143 11 334 217 60 24 chr1 42858152 42858235 -239335429 - MIR SINE MIR -78 184 99 464 253 100 13 chr1 42858363 42858513 -239335151 - L2 LINE L2 -213 3059 2897 673 315 141 18 chr1 42858945 42859524 -239334140 - L2 LINE L2 0 3313 2659 373 235 0 0 chr1 42860881 42860949 -239332715 + MIR SINE MIR 87 154 -108 330 296 96 0 chr1 42861373 42861488 -239332176 - L2 LINE L2 0 3313 3188 2101 111 0 29 chr1 42862006 42862321 -239331343 + AluSx SINE Alu 1 306 -6 9508 92 6 6 chr1 42864431 42864480 -239329184 + HSMAR2 DNA Mariner 2 50 -1252 1824 169 0 13 chr1 42864480 42864794 -239328870 + AluJb SINE Alu 3 312 0 9508 92 6 6 chr1 42864794 42866044 -239327620 + HSMAR2 DNA Mariner 49 1301 -1 568 184 28 0 chr1 42866111 42866220 -239327444 - MSTD LTR MaLR -11 385 274 * 1164 163 30 29 chr1 42866219 42866535 -239327129 - MSTD LTR MaLR -28 368 3 571 238 14 14 chr1 42866550 42866697 -239326967 + MER103 DNA DNA 13 159 -7 675 327 104 12 chr1 42866849 42867176 -239326488 + MLT1K LTR MaLR 71 427 -161 405 297 266 18 chr1 42867178 42867901 -239325763 - L2 LINE L2 -601 2713 1812 1045 253 19 12 chr1 42867928 42868185 -239325479 - MIR SINE MIR 0 262 4 908 311 166 50 chr1 42868201 42869522 -239324142 - L2 LINE L2 -1521 1793 319 280 246 31 0 chr1 42869811 42869876 -239323788 + Charlie8 DNA MER1_type 198 264 -2153 808 285 59 5 chr1 42869958 42870179 -239323485 + MIR SINE MIR 15 247 -15 * 869 202 49 82 chr1 42870174 42870441 -239323223 - MIR SINE MIR 0 262 5 215 273 36 0 chr1 42871333 42871388 -239322276 + L2 LINE L2 3249 3305 -8 1059 282 0 0 chr1 42871445 42871697 -239321967 - MIR SINE MIR 0 262 11 248 286 64 41 chr1 42871731 42871902 -239321762 - MLT1K LTR MaLR -21 567 393 418 214 87 15 chr1 42872131 42872260 -239321404 - MIR SINE MIR -68 140 13 970 259 73 35 chr1 42873875 42874083 -239319581 + LTR16C LTR ERVL 79 278 -213 1185 205 0 0 chr1 42874083 42874307 -239319357 - MER58A DNA MER1_type 0 224 1 970 259 73 35 chr1 42874307 42874496 -239319168 + LTR16C LTR ERVL 278 491 0 239 258 15 0 chr1 42874498 42874564 -239319100 - MIR SINE MIR -114 148 82 390 228 134 0 chr1 42874874 42875001 -239318663 - MIR3 SINE MIR -23 185 42 333 333 64 19 chr1 42875129 42875285 -239318379 - MIR3 SINE MIR -3 205 43 452 297 40 28 chr1 42875916 42876130 -239317534 + MIR SINE MIR 35 256 -6 466 277 163 0 chr1 42876143 42876327 -239317337 + MIR SINE MIR 46 259 -3 2058 254 136 36 chr1 42876377 42877471 -239316193 + L2 LINE L2 2041 3270 -43 226 346 39 0 chr1 42877593 42877720 -239315944 - L2 LINE L2 -217 3055 2924 575 240 57 42 chr1 42878096 42878288 -239315376 - MIR SINE MIR -27 235 41 223 353 69 0 chr1 42879267 42879383 -239314281 + MIR SINE MIR 127 250 -12 387 304 64 16 chr1 42879799 42879978 -239313686 + MIR3 SINE MIR 17 211 -43 759 238 132 26 chr1 42880393 42880666 -239312998 + L2 LINE L2 3010 3311 -2 260 241 25 13 chr1 42880687 42880766 -239312898 - MIR SINE MIR -11 251 172 2221 114 7 10 chr1 42880949 42881255 -239312409 - AluSp SINE Alu -8 305 1 480 181 43 0 chr1 42881462 42881556 -239312108 + MIR SINE MIR 75 172 -90 512 229 0 17 chr1 42881597 42881715 -239311949 + MIR SINE MIR 49 164 -98 454 270 81 7 chr1 42882056 42882204 -239311460 - L2 LINE L2 -1 3312 3154 642 279 29 19 chr1 42882217 42882425 -239311239 - MIR SINE MIR -23 239 30 1318 254 74 78 chr1 42883156 42883807 -239309857 - MLT2F LTR ERVL -8 655 8 372 167 39 13 chr1 42883813 42883891 -239309773 + MIR3 SINE MIR 77 156 -52 246 70 14 99 chr1 42883916 42883987 -239309677 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 249 344 67 18 chr1 42884475 42884757 -239308907 - L2 LINE L2 -173 3099 2804 384 318 0 0 chr1 42885178 42885285 -239308379 - MER63 DNA MER1_type -329 733 1 378 0 0 0 chr1 42885489 42885531 -239308133 + (CA)n Simple_repeat Simple_repeat 2 43 0 1401 138 12 29 chr1 42885534 42885572 -239308092 + MLT2B1 LTR ERVL 279 316 -204 4759 103 4 11 chr1 42885572 42886268 -239307396 + LTR8 LTR ERV1 1 691 0 1401 138 12 29 chr1 42886268 42886475 -239307189 + MLT2B1 LTR ERVL 316 520 0 2207 98 72 23 chr1 42886480 42886827 -239306837 - THE1B LTR MaLR 0 364 1 192 321 9 28 chr1 42886827 42886933 -239306731 + MIR SINE MIR 159 262 0 482 282 141 28 chr1 42886996 42887032 -239306632 - L3 LINE CR1 -3 1574 1543 1015 237 0 9 chr1 42887032 42887256 -239306408 + MER58A DNA MER1_type 2 223 -1 482 282 141 28 chr1 42887256 42887432 -239306232 - L3 LINE CR1 -34 1543 1338 197 279 29 15 chr1 42887464 42887532 -239306132 - MIR SINE MIR -145 117 49 552 307 66 25 chr1 42887806 42888050 -239305614 + MIR SINE MIR 8 261 -1 335 299 19 71 chr1 42889655 42889809 -239303855 - HAL1b LINE L1 -8 1340 1195 225 0 0 0 chr1 42889810 42889835 -239303829 + (CA)n Simple_repeat Simple_repeat 2 26 0 2447 88 0 0 chr1 42890425 42890721 -239302943 - AluSg SINE Alu -1 309 14 211 279 59 0 chr1 42890957 42891025 -239302639 + MIR SINE MIR 111 182 -80 358 344 87 18 chr1 42891317 42891535 -239302129 - L2 LINE L2 0 3272 3040 310 143 0 24 chr1 42891954 42892038 -239301626 + (TA)n Simple_repeat Simple_repeat 2 83 0 506 278 0 8 chr1 42892162 42892288 -239301376 - MIR SINE MIR -130 132 8 464 345 41 0 chr1 42892340 42892534 -239301130 + MIR SINE MIR 55 256 -6 1959 103 72 0 chr1 42892673 42892959 -239300705 + AluSg SINE Alu 1 305 0 348 322 25 0 chr1 42893292 42893413 -239300251 - MIR SINE MIR -7 255 132 233 309 123 0 chr1 42893483 42893564 -239300100 - MIR SINE MIR -155 107 17 483 275 138 21 chr1 42893570 42893759 -239299905 + L2 LINE L2 2487 2697 -617 671 179 0 4 chr1 42893759 42893900 -239299764 - L1ME1 LINE L1 0 6334 6039 441 239 26 26 chr1 42893902 42894019 -239299645 + L2 LINE L2 2687 2803 -511 513 325 42 30 chr1 42894019 42894284 -239299380 + MLT1J2 LTR MaLR 1 268 -182 245 194 0 48 chr1 42894322 42894384 -239299280 + MLT1J2 LTR MaLR 388 446 -4 1746 194 95 21 chr1 42894416 42894838 -239298826 + MLT1D LTR MaLR 47 499 -6 798 249 86 69 chr1 42894844 42895206 -239298458 + L2 LINE L2 2946 3313 0 324 288 196 18 chr1 42896198 42896417 -239297247 - MIR SINE MIR 0 262 5 1615 195 13 6 chr1 42896531 42896824 -239296840 + Tigger7 DNA MER2_type 32 329 -404 2307 113 0 0 chr1 42896824 42897125 -239296539 + AluSx SINE Alu 3 303 -9 1615 195 13 6 chr1 42897125 42897144 -239296520 + Tigger7 DNA MER2_type 329 346 -387 729 205 27 49 chr1 42897141 42897349 -239296315 + Charlie4 DNA MER1_type 1742 1946 -15 * 1981 155 7 0 chr1 42897349 42897640 -239296024 + AluSx SINE Alu 1 293 -19 729 205 27 49 chr1 42897640 42897655 -239296009 + Charlie4 DNA MER1_type 1946 1960 -1 260 315 157 42 chr1 42897673 42897889 -239295775 + L2 LINE L2 3032 3272 0 281 291 108 27 chr1 42897958 42898106 -239295558 - MIR SINE MIR -11 251 92 1511 239 83 35 chr1 42898423 42898916 -239294748 - LTR33A LTR ERVL 0 523 7 2417 260 95 28 chr1 42899089 42899680 -239293984 + L2 LINE L2 2126 2676 -637 2358 86 10 10 chr1 42899680 42899983 -239293681 + AluSc SINE Alu 1 303 -6 2417 260 95 28 chr1 42899983 42900464 -239293200 + L2 LINE L2 2676 3267 -46 240 238 238 0 chr1 42900547 42900648 -239293016 + MLT2F LTR ERVL 38 162 -501 188 268 54 0 chr1 42900893 42900949 -239292715 + L2 LINE L2 3254 3312 -1 551 251 47 31 chr1 42901376 42901567 -239292097 - MIR SINE MIR -21 241 48 1999 123 14 3 chr1 42901710 42901995 -239291669 + AluJo SINE Alu 1 288 -24 2190 253 49 60 chr1 42902048 42902898 -239290766 + L2 LINE L2 60 900 -2414 334 349 93 19 chr1 42902960 42903281 -239290383 - HERV16 LTR ERVL -4345 651 307 2659 102 0 8 chr1 42903769 42904142 -239289522 + THE1C LTR MaLR 1 370 -5 978 265 106 9 chr1 42904613 42905098 -239288566 + L2 LINE L2 2783 3313 0 266 259 9 46 chr1 42905370 42905478 -239288186 + LTR67 LTR ERVL 441 544 -13 453 19 0 0 chr1 42906351 42906405 -239287259 + (CA)n Simple_repeat Simple_repeat 1 54 0 277 287 40 87 chr1 42906508 42906658 -239287006 + MIR SINE MIR 117 259 -3 251 308 60 8 chr1 42907198 42907331 -239286333 - L2 LINE L2 -192 3080 2941 1889 161 10 30 chr1 42908045 42908350 -239285314 - AluJo SINE Alu -13 299 1 246 296 83 15 chr1 42908985 42909117 -239284547 + MIR3 SINE MIR 18 158 -50 2245 164 45 47 chr1 42909118 42909582 -239284082 + MLT1C LTR MaLR 1 463 -4 440 249 136 19 chr1 42910202 42910381 -239283283 - MIR SINE MIR -48 214 25 722 239 142 51 chr1 42911299 42911630 -239282034 - LTR16C LTR ERVL -30 461 101 2427 109 0 0 chr1 42911763 42912075 -239281589 - AluSx SINE Alu 0 312 1 261 297 0 0 chr1 42914348 42914412 -239279252 - MIR SINE MIR -66 142 79 238 312 0 58 chr1 42915239 42915428 -239278236 + CT-rich Low_complexity Low_complexity 1 178 0 254 310 121 17 chr1 42915479 42915595 -239278069 + L2 LINE L2 2632 2759 -555 207 0 0 0 chr1 42915665 42915688 -239277976 + (TG)n Simple_repeat Simple_repeat 2 24 0 242 132 19 0 chr1 42915773 42915826 -239277838 + GA-rich Low_complexity Low_complexity 1 54 0 446 250 242 37 chr1 42916722 42917098 -239276566 - MLT1H LTR MaLR -25 524 72 245 286 11 11 chr1 42917187 42917278 -239276386 - L2 LINE L2 -2660 654 564 204 158 0 0 chr1 42917306 42917344 -239276320 + (TG)n Simple_repeat Simple_repeat 1 38 0 434 208 151 0 chr1 42917571 42917677 -239275987 - L2 LINE L2 -1 3271 3150 859 160 0 8 chr1 42917892 42918023 -239275641 - FLAM_C SINE Alu -1 132 3 22 0 0 0 chr1 42918166 42918188 -239275476 + AT_rich Low_complexity Low_complexity 1 22 0 2298 94 0 3 chr1 42918379 42918678 -239274986 - AluY SINE Alu 0 311 14 224 279 59 0 chr1 42918914 42918982 -239274682 + MIR SINE MIR 111 182 -80 401 344 87 18 chr1 42919274 42919492 -239274172 - L2 LINE L2 0 3272 3040 292 146 0 24 chr1 42919911 42919993 -239273671 + (TA)n Simple_repeat Simple_repeat 2 81 0 931 99 8 0 chr1 42919996 42920117 -239273547 - AluSq/x SINE Alu -181 132 11 565 110 0 0 chr1 42920307 42920389 -239273275 + AluSg/x SINE Alu 219 300 -12 919 260 57 7 chr1 42920633 42921010 -239272654 - LTR16A LTR ERVL -6 444 1 360 329 163 29 chr1 42921010 42921515 -239272149 - L2 LINE L2 -224 3048 2484 941 182 51 0 chr1 42921515 42921691 -239271973 - MIR SINE MIR -43 219 35 440 333 120 21 chr1 42921857 42922232 -239271432 - L2 LINE L2 -980 2334 1923 195 204 0 0 chr1 42922740 42922784 -239270880 + (CA)n Simple_repeat Simple_repeat 1 44 0 334 260 20 40 chr1 42922847 42922947 -239270717 + MIR SINE MIR 48 145 -117 838 284 9 9 chr1 42922996 42923218 -239270446 - MIR SINE MIR -21 241 20 201 337 43 38 chr1 42923214 42923398 -239270266 + L2 LINE L2 2639 2823 -491 * 382 289 112 69 chr1 42923669 42923929 -239269735 - L2 LINE L2 -13 3259 2989 345 360 98 19 chr1 42924139 42924403 -239269261 + L2 LINE L2 2986 3270 -2 752 249 71 10 chr1 42925428 42925625 -239268039 + MIR SINE MIR 48 256 -6 350 297 43 36 chr1 42926225 42926363 -239267301 + MIR3 SINE MIR 2 140 -68 305 218 27 9 chr1 42926768 42926878 -239266786 + CT-rich Low_complexity Low_complexity 2 113 0 381 282 90 47 chr1 42927060 42927318 -239266346 + L2 LINE L2 2777 3053 -219 371 249 26 7 chr1 42928339 42928476 -239265188 + MIR3 SINE MIR 60 201 -7 520 273 16 8 chr1 42928628 42928749 -239264915 + MIR SINE MIR 28 149 -113 221 192 58 0 chr1 42928884 42928936 -239264728 + L2 LINE L2 3213 3267 -5 1988 134 31 3 chr1 42928991 42929281 -239264383 - AluJb SINE Alu -14 298 1 363 264 182 7 chr1 42929314 42929462 -239264202 - MIR SINE MIR -76 186 13 290 279 19 97 chr1 42931157 42931311 -239262353 - MIR3 SINE MIR -53 155 14 210 196 65 0 chr1 42931452 42931498 -239262166 + MIR SINE MIR 47 95 -167 591 200 11 11 chr1 42931604 42931779 -239261885 + GA-rich Low_complexity Low_complexity 2 176 0 311 266 108 43 chr1 42932251 42932390 -239261274 - L1MCa LINE L1 -4361 2065 1918 224 175 75 85 chr1 42932759 42932851 -239260813 - MIR SINE MIR -45 163 69 * 1584 260 142 47 chr1 42932832 42933841 -239259823 - L2 LINE L2 -7 3306 2203 270 245 186 10 chr1 42934890 42934992 -239258672 + L2 LINE L2 3153 3272 0 2271 95 26 3 chr1 42935242 42935546 -239258118 - AluY SINE Alu 0 311 1 282 192 29 0 chr1 42935850 42935921 -239257743 + MIR SINE MIR 102 174 -88 207 100 0 0 chr1 42936270 42936300 -239257364 + (CAG)n Simple_repeat Simple_repeat 3 32 0 2207 88 25 0 chr1 42937581 42937864 -239255800 - AluSg SINE Alu -3 307 18 265 280 65 65 chr1 42937925 42938093 -239255571 - LTR16A1 LTR ERVL -68 389 222 542 268 45 39 chr1 42938494 42938673 -239254991 - MIR SINE MIR -40 222 43 315 326 91 0 chr1 42938831 42938963 -239254701 - MIR3 SINE MIR 0 208 65 192 97 0 0 chr1 42939328 42939359 -239254305 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2374 98 50 31 chr1 42939803 42940160 -239253504 - THE1B LTR MaLR 0 364 1 588 298 79 21 chr1 42941312 42941547 -239252117 + MIR SINE MIR 15 260 -2 454 188 0 0 chr1 42941559 42941639 -239252025 - MER116 DNA Mariner 0 80 1 639 304 119 4 chr1 42941677 42941904 -239251760 + MIR SINE MIR 5 257 -5 2544 68 0 3 chr1 42942286 42942594 -239251070 + AluY SINE Alu 1 307 -4 3349 207 63 57 chr1 42942620 42943366 -239250298 - L1ME1 LINE L1 -47 6119 5379 201 39 0 0 chr1 42943366 42943392 -239250272 + (TTG)n Simple_repeat Simple_repeat 1 26 0 3349 207 63 57 chr1 42943392 42943717 -239249947 - L1ME1 LINE L1 -787 5379 5058 2189 113 7 0 chr1 42943717 42944009 -239249655 - AluSp SINE Alu -19 294 1 3349 207 63 57 chr1 42944009 42944953 -239248711 - L1ME1 LINE L1 -1108 5058 4104 834 290 214 22 chr1 42944956 42945645 -239248019 + L2 LINE L2 2461 3303 -10 1857 177 7 7 chr1 42945753 42946063 -239247601 - AluJb SINE Alu -2 310 1 288 358 123 22 chr1 42946063 42946379 -239247285 + L2 LINE L2 1789 2136 -1178 454 328 0 0 chr1 42946432 42946551 -239247113 - L2 LINE L2 -5 3267 3149 343 287 148 0 chr1 42946549 42946650 -239247014 + L2 LINE L2 3198 3313 0 * 822 287 107 28 chr1 42946827 42947322 -239246342 - L2 LINE L2 -1812 1502 969 407 223 63 76 chr1 42947346 42947584 -239246080 + MLT1J LTR MaLR 72 306 -205 718 280 62 30 chr1 42947656 42947992 -239245672 - MLT1H LTR MaLR -165 384 38 2260 124 0 3 chr1 42948223 42948529 -239245135 + AluSx SINE Alu 1 305 -7 227 307 174 14 chr1 42948562 42948774 -239244890 - L2 LINE L2 -2393 921 676 207 315 115 31 chr1 42948862 42948992 -239244672 - L2 LINE L2 -2677 637 497 * 333 342 133 15 chr1 42948990 42949402 -239244262 + L2 LINE L2 2225 2685 -629 293 278 9 43 chr1 42949947 42950062 -239243602 + (CCCCAG)n Simple_repeat Simple_repeat 6 116 0 622 228 129 16 chr1 42950210 42950403 -239243261 + MER58C DNA MER1_type 1 215 0 372 298 45 7 chr1 42950841 42950987 -239242677 + MIR SINE MIR 34 185 -62 243 0 0 0 chr1 42951029 42951056 -239242608 + (A)n Simple_repeat Simple_repeat 1 27 0 200 315 96 0 chr1 42951109 42951182 -239242482 + MIR SINE MIR 21 100 -108 485 314 54 25 chr1 42952120 42952362 -239241302 - MIR SINE MIR -8 254 6 367 265 0 0 chr1 42952413 42952481 -239241183 + MIR SINE MIR 8 75 -187 845 287 90 19 chr1 42952527 42952837 -239240827 + MER115 DNA AcHobo 10 341 -352 427 234 234 23 chr1 42952857 42953032 -239240632 + MER115 DNA AcHobo 477 688 -5 769 228 87 16 chr1 42953056 42953240 -239240424 + MIR SINE MIR 45 241 -21 197 289 56 33 chr1 42953250 42953340 -239240324 + L3 LINE CR1 1243 1334 -243 * 487 261 100 33 chr1 42953315 42953536 -239240128 + MIR SINE MIR 7 235 -27 358 239 23 0 chr1 42953682 42953770 -239239894 - MIR SINE MIR -67 141 52 220 301 226 0 chr1 42954465 42954558 -239239106 - L2 LINE L2 -15 3257 3144 1657 193 48 0 chr1 42954584 42954705 -239238959 + AluJb SINE Alu 1 115 -197 306 0 0 0 chr1 42954705 42954739 -239238925 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1657 193 48 0 chr1 42954739 42954907 -239238757 + AluJb SINE Alu 115 304 -8 600 297 178 10 chr1 42954987 42955398 -239238266 - L2 LINE L2 -584 2730 2251 241 228 18 0 chr1 42955404 42955461 -239238203 - MER5B DNA MER1_type -45 133 76 636 250 107 36 chr1 42955683 42955907 -239237757 - MIR SINE MIR -19 243 4 1740 179 3 22 chr1 42956402 42956715 -239236949 - AluJb SINE Alu 0 312 6 538 271 11 53 chr1 42956761 42956949 -239236715 + MER5A DNA MER1_type 9 188 -1 237 277 8 92 chr1 42957452 42957571 -239236093 - MIR3 SINE MIR -44 164 56 298 337 153 11 chr1 42958313 42958595 -239235069 + L2 LINE L2 2910 3231 -41 2337 145 8 18 chr1 42958646 42959040 -239234624 - MLT1B LTR MaLR 0 390 1 1223 211 187 7 chr1 42959096 42959433 -239234231 - MLT1G LTR MaLR -65 525 152 897 149 88 176 chr1 42959452 42959617 -239234047 - MLT1A2 LTR MaLR -12 362 184 5334 99 18 6 chr1 42959617 42960406 -239233258 - L1MA2 LINE L1 0 6304 5507 897 149 88 176 chr1 42960406 42960637 -239233027 - MLT1A2 LTR MaLR -190 184 1 387 127 0 0 chr1 42960684 42960747 -239232917 + (TG)n Simple_repeat Simple_repeat 2 64 0 947 200 0 6 chr1 42960747 42960912 -239232752 - AluJo SINE Alu -148 164 1 418 151 12 47 chr1 42960931 42961017 -239232647 - MLT1G LTR MaLR -510 85 3 356 320 40 0 chr1 42962122 42962222 -239231442 + L2 LINE L2 3200 3303 -10 526 301 117 31 chr1 42962251 42962577 -239231087 + L2 LINE L2 2813 3166 -106 643 303 106 46 chr1 42962669 42963036 -239230628 + MLT1J2 LTR MaLR 57 445 -5 2913 175 8 4 chr1 42963425 42963894 -239229770 + MER70A LTR ERVL 2 472 0 229 297 0 44 chr1 42964289 42964380 -239229284 + L2 LINE L2 3006 3092 -180 252 319 89 19 chr1 42964390 42964547 -239229117 - LTR16C LTR ERVL -2 489 322 194 260 237 59 chr1 42964840 42965009 -239228655 + L2 LINE L2 3070 3268 -4 791 303 35 14 chr1 42965189 42965439 -239228225 - MIR SINE MIR 0 262 7 1204 285 117 8 chr1 42965717 42966222 -239227442 + L1ME4a LINE L1 5339 5898 -223 747 257 124 19 chr1 42966286 42966496 -239227168 + MIR SINE MIR 7 238 -24 270 316 164 13 chr1 42967050 42967202 -239226462 - MIR3 SINE MIR -3 205 31 2375 89 3 16 chr1 42967301 42967617 -239226047 - AluSx SINE Alu 0 312 1 328 293 233 0 chr1 42967628 42967778 -239225886 + L3 LINE CR1 1381 1565 -12 2981 150 59 19 chr1 42967831 42968410 -239225254 + Tigger7 DNA MER2_type 1 2487 0 659 282 101 23 chr1 42968680 42969140 -239224524 - L1MC4 LINE L1 -497 5665 5413 657 255 47 47 chr1 42969205 42969460 -239224204 - L1MC4 LINE L1 -2052 4094 3840 24 0 0 0 chr1 42969477 42969501 -239224163 + AT_rich Low_complexity Low_complexity 1 24 0 534 288 111 20 chr1 42969721 42970163 -239223501 - L1ME3A LINE L1 -303 5818 5360 204 179 26 0 chr1 42970163 42970202 -239223462 + (TA)n Simple_repeat Simple_repeat 2 41 0 231 202 119 48 chr1 42970233 42970317 -239223347 + L1MC4 LINE L1 6614 6703 -1339 5205 142 20 35 chr1 42970411 42971634 -239222030 + L1MA7 LINE L1 4988 6192 -99 285 167 90 13 chr1 42971637 42971715 -239221949 - L1ME3A LINE L1 -874 5272 5189 * 472 263 53 57 chr1 42971711 42971920 -239221744 - L1ME3A LINE L1 -1 6169 5962 1259 278 46 8 chr1 42971974 42972363 -239221301 - L1ME3A LINE L1 -208 5962 5559 610 275 91 28 chr1 42972363 42972727 -239220937 - L1ME3A LINE L1 -935 5211 4825 718 274 87 18 chr1 42972754 42973251 -239220413 - L1ME3A LINE L1 -2659 3487 2957 489 281 27 67 chr1 42973550 42973708 -239219956 - L1ME3A LINE L1 -3417 2729 2566 2098 132 0 7 chr1 42973708 42974011 -239219653 - AluSx SINE Alu -11 301 1 489 281 27 67 chr1 42974011 42974371 -239219293 - L1ME3A LINE L1 -3580 2566 2232 235 229 0 0 chr1 42975000 42975048 -239218616 + T-rich Low_complexity Low_complexity 4 51 0 1532 162 208 105 chr1 42975482 42975992 -239217672 - L1MD3 LINE L1 -2 7993 7537 354 277 0 0 chr1 42975992 42976086 -239217578 - MLT1F1 LTR MaLR -439 128 35 1532 162 208 105 chr1 42976086 42976513 -239217151 - L1MD3 LINE L1 -458 7537 6605 1850 168 11 0 chr1 42976517 42976802 -239216862 + AluJb SINE Alu 1 288 -24 1510 203 49 115 chr1 42976825 42977372 -239216292 - MLT2B1 LTR ERVL 0 520 10 6048 133 17 24 chr1 42977393 42978936 -239214728 + L1PA16 LINE L1 4625 6145 -21 1910 182 94 7 chr1 42978973 42979407 -239214257 - L1MC3 LINE L1 -1181 7022 6551 1154 83 0 6 chr1 42979407 42979587 -239214077 + AluY SINE Alu 127 305 0 10132 200 36 34 chr1 42979587 42980644 -239213020 - L1MC3 LINE L1 -743 5821 4767 5015 168 48 14 chr1 42980644 42981479 -239212185 + MER21B LTR ERV1 1 863 0 10132 200 36 34 chr1 42981479 42984153 -239209511 - L1MC3 LINE L1 -1797 4767 2825 3994 223 111 76 chr1 42984122 42984217 -239209447 - L1MC3 LINE L1 -4103 2461 2371 * 2364 88 0 0 chr1 42984217 42984511 -239209153 + AluSq SINE Alu 1 294 -19 3994 223 111 76 chr1 42984511 42984661 -239209003 - L1MC3 LINE L1 -4193 2371 2228 1928 168 44 14 chr1 42984661 42985025 -239208639 - THE1C LTR MaLR 0 375 1 3994 223 111 76 chr1 42985025 42987101 -239206563 - L1MC3 LINE L1 -4336 2228 1 446 314 103 28 chr1 42987118 42987624 -239206040 - HAL1 LINE L1 -851 1656 1113 185 328 251 0 chr1 42987651 42987822 -239205842 - L3 LINE CR1 -160 1417 1204 357 361 111 38 chr1 42988271 42988755 -239204909 - L2 LINE L2 -63 3209 2698 449 305 88 29 chr1 42988818 42989090 -239204574 - L2 LINE L2 -811 2503 2216 776 229 112 142 chr1 42989635 42990078 -239203586 + MLT1H LTR MaLR 1 425 -124 1972 122 72 0 chr1 42990078 42990357 -239203307 + AluSx SINE Alu 1 299 -13 776 229 112 142 chr1 42990357 42990477 -239203187 + MLT1H LTR MaLR 425 547 -2 2006 172 26 3 chr1 42990923 42991266 -239202398 - MLT1B LTR MaLR -39 351 1 447 242 60 38 chr1 42991724 42991887 -239201777 + MIR SINE MIR 1 179 -60 180 77 0 0 chr1 42994315 42994341 -239199323 + (CA)n Simple_repeat Simple_repeat 1 26 0 225 292 118 35 chr1 42994542 42994686 -239198978 - MIR3 SINE MIR -20 188 33 2864 7 0 0 chr1 42994725 42995031 -239198633 + AluYb8 SINE Alu 1 306 -12 239 190 0 69 chr1 42995229 42995287 -239198377 - MIR3 SINE MIR -53 155 102 1753 208 64 33 chr1 42995676 42996095 -239197569 - MER63B DNA MER1_type 0 436 5 433 267 17 72 chr1 42996108 42996154 -239197510 - MIR SINE MIR -73 189 142 2221 80 11 3 chr1 42996154 42996441 -239197223 - AluSq SINE Alu -24 289 1 433 267 17 72 chr1 42996441 42996574 -239197090 - MIR SINE MIR -120 142 20 459 299 108 26 chr1 42996798 42996992 -239196672 + MIR SINE MIR 47 256 -6 627 315 162 42 chr1 42997701 42998879 -239194785 + L2 LINE L2 1596 2914 -400 431 254 16 40 chr1 42998893 42999019 -239194645 + L2 LINE L2 3191 3313 0 237 273 15 15 chr1 42999175 42999241 -239194423 + L2 LINE L2 3204 3269 -3 224 314 162 0 chr1 43002674 43002779 -239190885 - MIR3 SINE MIR -22 186 65 488 251 144 6 chr1 43003223 43003390 -239190274 + Charlie8 DNA MER1_type 56 245 -2172 345 383 59 15 chr1 43003747 43004084 -239189580 + L2 LINE L2 2625 2976 -338 676 296 152 37 chr1 43004101 43004503 -239189161 + L2 LINE L2 2862 3309 -4 202 354 24 0 chr1 43004506 43004588 -239189076 - MIR3 SINE MIR -10 198 115 408 273 168 12 chr1 43004619 43004877 -239188787 + L1ME LINE L1 5354 5659 -511 397 274 51 71 chr1 43004910 43005107 -239188557 - L2 LINE L2 -1 3312 3120 212 250 104 21 chr1 43005282 43005378 -239188286 - L2 LINE L2 -88 3225 3122 192 304 188 0 chr1 43005539 43005608 -239188056 - L2 LINE L2 -5 3267 3186 591 85 0 0 chr1 43005613 43005695 -239187969 + (TTCC)n Simple_repeat Simple_repeat 2 83 0 1639 146 12 0 chr1 43005720 43005967 -239187697 - L1PB2 LINE L1 0 6151 5902 781 272 123 29 chr1 43005969 43006142 -239187522 - L2 LINE L2 -92 3221 3066 2266 101 3 0 chr1 43006142 43006439 -239187225 + AluSc SINE Alu 1 298 -11 781 272 123 29 chr1 43006439 43006647 -239187017 - L2 LINE L2 -247 3066 2804 259 294 106 31 chr1 43007226 43007386 -239186278 + L2 LINE L2 2920 3091 -181 2219 226 40 18 chr1 43007781 43008285 -239185379 - LTR40a LTR ERVL 0 519 5 1334 201 272 18 chr1 43008421 43008859 -239184805 - MLT1H LTR MaLR 0 549 1 278 354 71 0 chr1 43008859 43008986 -239184678 + L2 LINE L2 3137 3272 0 231 322 80 45 chr1 43009136 43009422 -239184242 + L2 LINE L2 2553 2848 -466 408 67 0 0 chr1 43009701 43009761 -239183903 + (GA)n Simple_repeat Simple_repeat 2 61 0 251 189 21 21 chr1 43009750 43009845 -239183819 + GA-rich Low_complexity Low_complexity 2 96 0 * 375 228 87 60 chr1 43010204 43010353 -239183311 - L1ME4a LINE L1 -19 6102 5950 918 181 60 72 chr1 43010880 43011223 -239182441 - MSTC LTR MaLR -38 388 4 384 257 50 21 chr1 43011233 43011373 -239182291 - L1ME4a LINE L1 -340 5822 5679 228 299 94 24 chr1 43011515 43011642 -239182022 + MLT1K LTR MaLR 69 204 -384 527 239 104 8 chr1 43012598 43012732 -239180932 - MIR SINE MIR -70 192 46 1952 185 78 16 chr1 43012981 43013354 -239180310 - MSTD LTR MaLR 0 396 1 324 351 26 13 chr1 43013413 43013567 -239180097 - MIR SINE MIR -79 183 28 404 167 0 0 chr1 43013860 43013926 -239179738 + MER94 DNA DNA 66 131 -3 573 298 110 4 chr1 43013939 43014194 -239179470 + L2 LINE L2 2807 3088 -225 926 264 89 44 chr1 43014201 43014697 -239178967 - MLT1F1 LTR MaLR 0 567 50 270 300 125 17 chr1 43014765 43014885 -239178779 + L2 LINE L2 3181 3313 0 1300 179 44 88 chr1 43015358 43015677 -239177987 - MLT2D LTR ERVL -8 406 102 2291 143 70 5 chr1 43015764 43016164 -239177500 - MSTA LTR MaLR -2 426 1 2177 119 21 58 chr1 43018601 43018762 -239174902 + THE1B LTR MaLR 1 166 -198 2079 106 3 64 chr1 43018762 43019091 -239174573 - AluSp SINE Alu -4 309 1 2177 119 21 58 chr1 43019091 43019307 -239174357 + THE1B LTR MaLR 166 364 0 353 320 8 0 chr1 43019632 43019760 -239173904 + MER94 DNA DNA 6 134 0 23 0 0 0 chr1 43020470 43020493 -239173171 + AT_rich Low_complexity Low_complexity 1 23 0 1893 192 96 193 chr1 43020499 43021008 -239172656 - L1ME2 LINE L1 -9 6155 5643 965 153 0 7 chr1 43021008 43021152 -239172512 + FRAM SINE Alu 10 152 -24 1893 192 96 193 chr1 43021152 43021503 -239172161 - L1ME2 LINE L1 -521 5643 5259 1552 194 26 23 chr1 43021517 43021868 -239171796 - L1ME2 LINE L1 -1090 5056 4705 376 307 15 10 chr1 43022642 43022786 -239170878 + MIR SINE MIR 32 146 -62 1593 228 92 34 chr1 43022930 43023400 -239170264 - MLT1D LTR MaLR 0 505 9 216 260 0 0 chr1 43023403 43023453 -239170211 + (TG)n Simple_repeat Simple_repeat 1 50 0 290 209 151 12 chr1 43023614 43023700 -239169964 + MER58B DNA MER1_type 1 98 -243 * 457 188 24 0 chr1 43023667 43023752 -239169912 + MER58B DNA MER1_type 248 334 -7 331 294 17 25 chr1 43023761 43023880 -239169784 - MIR3 SINE MIR -50 158 41 204 75 125 0 chr1 43024025 43024065 -239169599 + L3 LINE CR1 1444 1488 -89 563 236 83 32 chr1 43025032 43025256 -239168408 - MIR SINE MIR -1 261 22 502 266 19 19 chr1 43025346 43025500 -239168164 + MER5B DNA MER1_type 1 154 -24 2644 126 0 0 chr1 43025572 43025936 -239167728 - THE1B LTR MaLR 0 364 1 201 301 19 29 chr1 43026130 43026233 -239167431 - L2 LINE L2 -264 3008 2907 2057 239 114 0 chr1 43026234 43026707 -239166957 + MLT1E LTR MaLR 3 529 -64 996 140 0 0 chr1 43026713 43026856 -239166808 - FLAM_C SINE Alu 0 143 1 346 191 0 0 chr1 43026856 43026919 -239166745 + MLT1E LTR MaLR 592 654 0 2486 177 135 43 chr1 43026922 43027647 -239166017 + LTR48 LTR ERV1 3 707 0 345 298 94 39 chr1 43027868 43028049 -239165615 - L2 LINE L2 -586 2728 2538 224 355 38 21 chr1 43028788 43028974 -239164690 - L2 LINE L2 -448 2866 2678 232 139 0 0 chr1 43029181 43029217 -239164447 - L1MA9 LINE L1 -2 6310 6275 7745 243 99 35 chr1 43029221 43031976 -239161688 - L1M4 LINE L1 -1031 5115 2183 181 294 35 24 chr1 43031976 43032061 -239161603 + MIR3 SINE MIR 116 201 -7 345 242 32 0 chr1 43032557 43032652 -239161012 - MIR SINE MIR -77 185 88 2249 113 0 0 chr1 43032764 43033055 -239160609 - AluSx SINE Alu -21 291 1 468 258 59 50 chr1 43033325 43033546 -239160118 + MLT1L LTR MaLR 388 610 -5 349 318 0 23 chr1 43033667 43033796 -239159868 - MIR SINE MIR -62 146 21 2027 141 7 3 chr1 43034602 43034901 -239158763 - AluJo SINE Alu -8 304 5 638 266 16 47 chr1 43035335 43035527 -239158137 - MER91A DNA MER1_type 0 196 11 1246 259 58 52 chr1 43035761 43036093 -239157571 - L2 LINE L2 -352 2962 2624 4229 161 44 9 chr1 43036093 43036846 -239156818 - MER4E LTR ERV1 0 779 1 1246 259 58 52 chr1 43036846 43037046 -239156618 - L2 LINE L2 -690 2624 2427 294 106 0 0 chr1 43037290 43037337 -239156327 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 358 42 21 0 chr1 43037347 43037395 -239156269 + MADE1 DNA Mariner 32 80 0 327 281 21 10 chr1 43037395 43037491 -239156173 - L2 LINE L2 -18 3295 3199 1524 194 90 153 chr1 43038055 43038814 -239154850 - LTR8A LTR ERV1 -16 711 1 581 263 72 10 chr1 43039414 43039623 -239154041 + MIR SINE MIR 31 252 -10 301 203 31 0 chr1 43039763 43039827 -239153837 + MER53 DNA DNA 2 67 -122 296 182 23 68 chr1 43089993 43090081 -239103583 + MIR SINE MIR 60 143 -65 346 302 141 20 chr1 43090100 43090249 -239103415 + MIR SINE MIR 12 178 -84 183 222 0 0 chr1 43090982 43091027 -239102637 + G-rich Low_complexity Low_complexity 3 47 0 282 199 113 93 chr1 43091948 43092099 -239101565 - L2 LINE L2 0 3313 3160 554 249 171 28 chr1 43092730 43092947 -239100717 - MIR SINE MIR -2 260 13 231 154 0 39 chr1 43092947 43092999 -239100665 + CT-rich Low_complexity Low_complexity 2 51 0 230 237 205 64 chr1 43093184 43093340 -239100324 - MIR3 SINE MIR -7 201 24 392 288 7 50 chr1 43093816 43093955 -239099709 + MIR SINE MIR 117 249 -13 4886 159 17 8 chr1 43094125 43094985 -239098679 - L1MB5 LINE L1 -23 6151 5284 2151 114 10 0 chr1 43095094 43095401 -239098263 + AluSg SINE Alu 1 310 0 208 324 132 39 chr1 43095527 43095731 -239097933 + MIR SINE MIR 28 250 -12 292 175 200 25 chr1 43096299 43096379 -239097285 - MIR SINE MIR -3 259 166 656 215 106 28 chr1 43096379 43096682 -239096982 + MLT1B LTR MaLR 1 390 0 501 234 89 0 chr1 43096682 43096806 -239096858 - MIR SINE MIR -92 170 36 1062 196 39 20 chr1 43096994 43097198 -239096466 - MER63A DNA MER1_type -1 209 2 576 216 24 0 chr1 43097319 43097444 -239096220 - MIR3 SINE MIR 0 208 81 1343 275 145 36 chr1 43098295 43099150 -239094514 + L2 LINE L2 2118 3054 -259 278 293 60 9 chr1 43099538 43099654 -239094010 + L2 LINE L2 3148 3269 -3 208 301 97 26 chr1 43099726 43099839 -239093825 + L2 LINE L2 3188 3308 -5 414 154 0 0 chr1 43100518 43100596 -239093068 + (CAT)n Simple_repeat Simple_repeat 1 78 0 481 228 309 0 chr1 43100598 43100734 -239092930 - MIR SINE MIR -11 251 74 390 378 24 12 chr1 43100864 43101028 -239092636 + MIR SINE MIR 7 172 -90 634 255 19 12 chr1 43101074 43101235 -239092429 - MIR SINE MIR -5 257 96 208 353 167 6 chr1 43101236 43101392 -239092272 + MIR SINE MIR 25 205 -57 835 302 39 49 chr1 43102366 43102777 -239090887 - MLT1I LTR MaLR -2 407 1 255 79 0 0 chr1 43103003 43103041 -239090623 + (TG)n Simple_repeat Simple_repeat 2 39 0 473 307 21 42 chr1 43103406 43103598 -239090066 - MIR SINE MIR -55 207 20 191 345 23 35 chr1 43104316 43104403 -239089261 + L2 LINE L2 3186 3271 -1 393 22 0 0 chr1 43105080 43105126 -239088538 + (CA)n Simple_repeat Simple_repeat 2 47 0 1851 191 113 53 chr1 43105411 43105823 -239087841 - MLT2B1 LTR ERVL -4 516 69 414 0 0 0 chr1 43105823 43105869 -239087795 + (CA)n Simple_repeat Simple_repeat 2 47 0 1851 191 113 53 chr1 43105869 43105943 -239087721 - MLT2B1 LTR ERVL -451 69 1 2414 111 24 11 chr1 43105973 43106343 -239087321 - THE1C LTR MaLR 0 375 1 240 321 60 60 chr1 43107211 43107395 -239086269 - L3 LINE CR1 -3 1574 1391 564 257 153 50 chr1 43107423 43107645 -239086019 - MIR SINE MIR 0 262 18 783 327 60 34 chr1 43107686 43108218 -239085446 - L3 LINE CR1 -227 1350 805 315 268 10 41 chr1 43108372 43108469 -239085195 + MIR SINE MIR 19 112 -96 875 252 9 37 chr1 43108518 43108732 -239084932 + MIR SINE MIR 24 231 -31 345 196 0 69 chr1 43109680 43109782 -239083882 - L1ME4a LINE L1 -37 6084 5990 360 0 0 0 chr1 43109793 43109833 -239083831 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 89 0 0 chr1 43110178 43110234 -239083430 + AT_rich Low_complexity Low_complexity 1 56 0 251 158 53 45 chr1 43110691 43110824 -239082840 + (TTATA)n Simple_repeat Simple_repeat 1 134 0 666 255 76 66 chr1 43110824 43110876 -239082788 - L1ME4a LINE L1 -157 5964 5914 2200 133 40 0 chr1 43110876 43111223 -239082441 - MER46B DNA MER2_type 0 236 1 666 255 76 66 chr1 43111223 43111507 -239082157 - L1ME4a LINE L1 -207 5914 5627 1961 116 0 44 chr1 43111507 43111825 -239081839 - AluSq SINE Alu -5 308 5 666 255 76 66 chr1 43111825 43112047 -239081617 - L1ME4a LINE L1 -494 5627 5409 330 301 73 61 chr1 43112064 43112310 -239081354 - L1ME4a LINE L1 -805 5341 5093 374 249 196 87 chr1 43112383 43112612 -239081052 - MLT1K LTR MaLR 0 588 335 225 351 0 27 chr1 43112943 43113017 -239080647 + MIR SINE MIR 4 75 -187 1577 200 106 6 chr1 43113048 43113408 -239080256 - MSTD LTR MaLR 0 396 1 233 228 99 99 chr1 43113537 43113615 -239080049 + L2 LINE L2 3169 3249 -23 2119 127 0 16 chr1 43113615 43113930 -239079734 + AluSx SINE Alu 1 310 -2 233 228 99 99 chr1 43113930 43113952 -239079712 + L2 LINE L2 3248 3269 -3 804 276 53 22 chr1 43114185 43114413 -239079251 + MIR SINE MIR 18 252 -10 242 315 126 0 chr1 43114625 43114736 -239078928 + MIR3 SINE MIR 58 182 -26 327 283 14 65 chr1 43115228 43115366 -239078298 - MIR SINE MIR -112 150 20 373 281 52 0 chr1 43115371 43115467 -239078197 - MER112 DNA MER1_type -1 259 159 225 65 0 0 chr1 43115569 43115600 -239078064 + (TG)n Simple_repeat Simple_repeat 2 32 0 332 270 11 11 chr1 43115632 43115721 -239077943 - MER112 DNA MER1_type -171 89 1 714 259 63 17 chr1 43115746 43115985 -239077679 - MIR SINE MIR 0 262 13 2070 133 0 10 chr1 43116041 43116334 -239077330 - AluSx SINE Alu -20 292 3 635 169 253 0 chr1 43116800 43116966 -239076698 + L1ME4a LINE L1 5881 6088 -33 611 246 35 0 chr1 43117471 43117613 -239076051 - MIR SINE MIR -73 189 43 789 266 34 8 chr1 43118253 43118490 -239075174 + MIR SINE MIR 20 262 0 220 361 76 0 chr1 43118515 43118634 -239075030 + L2 LINE L2 3145 3272 0 1813 233 65 31 chr1 43121420 43121962 -239071702 - MLT1F1 LTR MaLR -1 566 1 210 214 143 0 chr1 43122013 43122083 -239071581 - MIR SINE MIR -163 99 20 2204 108 16 16 chr1 43122761 43123067 -239070597 - AluSx SINE Alu -6 306 1 1003 232 19 0 chr1 43123920 43124131 -239069533 - MIR SINE MIR -23 239 25 3666 205 7 62 chr1 43124304 43124351 -239069313 + L1MB8 LINE L1 4855 4903 -1275 2431 89 0 3 chr1 43124351 43124655 -239069009 - AluSc SINE Alu -6 303 1 3666 205 7 62 chr1 43124655 43125981 -239067683 + L1MB8 LINE L1 4903 6153 -25 29 28 0 0 chr1 43126758 43126794 -239066870 + AT_rich Low_complexity Low_complexity 1 36 0 2346 47 43 0 chr1 43126985 43127263 -239066401 - AluY SINE Alu -21 290 1 621 226 48 7 chr1 43127495 43127641 -239066023 - MER3 DNA MER1_type -57 152 1 341 332 99 43 chr1 43127647 43127879 -239065785 + L2 LINE L2 2986 3230 -42 778 283 77 25 chr1 43128234 43128520 -239065144 - L3 LINE CR1 -3 1574 1274 370 254 149 0 chr1 43128954 43128992 -239064672 - MIR SINE MIR 0 262 231 270 0 0 0 chr1 43128992 43129022 -239064642 + (TA)n Simple_repeat Simple_repeat 2 31 0 370 254 149 0 chr1 43129022 43129117 -239064547 - MIR SINE MIR -31 231 109 288 312 41 14 chr1 43129253 43129412 -239064252 - MIR SINE MIR -66 142 22 841 275 202 5 chr1 43130102 43130528 -239063136 - L2 LINE L2 0 3313 2804 2177 116 3 3 chr1 43131021 43131323 -239062341 + AluSx SINE Alu 1 302 -10 3225 181 41 6 chr1 43131840 43131862 -239061802 - L1MB7 LINE L1 -24 6147 6127 2276 123 19 45 chr1 43131862 43132236 -239061428 + THE1B LTR MaLR 1 364 0 3225 181 41 6 chr1 43132236 43133464 -239060200 - L1MB7 LINE L1 -44 6127 4841 180 261 0 0 chr1 43133542 43133588 -239060076 + L2 LINE L2 3249 3294 -19 447 261 70 65 chr1 43137999 43138214 -239055450 + L3 LINE CR1 1246 1461 -116 5048 157 45 17 chr1 43138362 43139871 -239053793 - L1MB3 LINE L1 -1 6182 4642 1879 100 111 7 chr1 43140244 43140421 -239053243 - AluSg SINE Alu -1 309 91 198 0 0 0 chr1 43140421 43140443 -239053221 + (TG)n Simple_repeat Simple_repeat 1 22 0 1879 100 111 7 chr1 43140443 43140545 -239053119 - AluSg SINE Alu -219 91 1 478 262 111 38 chr1 43140592 43140936 -239052728 - L2 LINE L2 -1 3312 2944 294 295 45 26 chr1 43141433 43141589 -239052075 + L1ME4a LINE L1 5729 5887 -234 7665 38 0 0 chr1 43141745 43142686 -239050978 + L1PA4 LINE L1 5214 6154 -1 2762 138 41 19 chr1 43143023 43143509 -239050155 - L1MB2 LINE L1 -2 6169 5673 1020 110 7 0 chr1 43143796 43143932 -239049732 + AluSq/x SINE Alu 1 137 -175 2276 99 3 0 chr1 43143932 43144256 -239049408 + AluSx SINE Alu 1 325 0 770 302 69 42 chr1 43144813 43145136 -239048528 - L2 LINE L2 -2 3311 2998 2273 120 0 0 chr1 43145136 43145445 -239048219 + AluSx SINE Alu 1 309 -3 770 302 69 42 chr1 43145445 43145774 -239047890 - L2 LINE L2 -315 2998 2642 213 345 68 0 chr1 43145926 43146074 -239047590 - MER5B DNA MER1_type 0 178 21 2292 117 0 0 chr1 43146134 43146443 -239047221 + AluSc SINE Alu 1 309 0 1662 194 19 62 chr1 43148276 43148647 -239045017 - MLT1B LTR MaLR -35 355 1 248 211 53 0 chr1 43148729 43148786 -239044878 + MIR SINE MIR 128 187 -75 392 224 0 0 chr1 43149208 43149284 -239044380 + MER116 DNA Mariner 1 76 -4 827 145 0 0 chr1 43150652 43150769 -239042895 - AluSq/x SINE Alu -196 117 1 906 161 0 19 chr1 43150810 43150965 -239042699 + FRAM SINE Alu 11 162 -14 1761 166 34 3 chr1 43151032 43151327 -239042337 + AluJb SINE Alu 1 304 -8 474 123 0 0 chr1 43151454 43151519 -239042145 + AluS SINE Alu 2 66 -244 204 40 0 0 chr1 43151519 43151544 -239042120 + (A)n Simple_repeat Simple_repeat 1 25 0 257 310 219 7 chr1 43151735 43151890 -239041774 - MIR3 SINE MIR -7 201 14 2111 120 130 38 chr1 43153067 43153419 -239040245 + MSTA LTR MaLR 1 394 -34 2258 117 0 16 chr1 43153419 43153735 -239039929 - AluSx SINE Alu -1 311 1 2111 120 130 38 chr1 43153735 43153774 -239039890 + MSTA LTR MaLR 394 428 0 186 348 22 0 chr1 43154743 43154835 -239038829 - L2 LINE L2 -1162 2152 2059 2077 157 91 85 chr1 43155310 43155827 -239037837 + MLT2B1 LTR ERVL 1 520 0 210 105 0 0 chr1 43157223 43157261 -239036403 + (A)n Simple_repeat Simple_repeat 1 38 0 324 0 0 0 chr1 43158930 43158966 -239034698 + (CA)n Simple_repeat Simple_repeat 1 36 0 196 250 0 0 chr1 43159328 43159376 -239034288 - L2 LINE L2 -16 3297 3250 576 261 14 7 chr1 43159391 43159533 -239034131 - MIR SINE MIR -114 148 6 385 329 91 57 chr1 43159785 43160168 -239033496 + L2 LINE L2 2873 3268 -4 425 232 22 80 chr1 43160497 43160635 -239033029 + L2 LINE L2 3183 3312 -1 1714 210 48 46 chr1 43161047 43161504 -239032160 - MLT1C LTR MaLR -9 458 1 183 119 95 0 chr1 43161525 43161567 -239032097 - L2 LINE L2 -9 3263 3218 313 383 114 3 chr1 43162015 43162331 -239031333 + L2 LINE L2 2902 3252 -20 198 313 69 23 chr1 43162306 43162437 -239031227 - L2 LINE L2 -590 2724 2588 * 211 303 0 15 chr1 43163501 43163567 -239030097 + CT-rich Low_complexity Low_complexity 4 68 0 260 274 155 34 chr1 43163964 43164146 -239029518 - MIR SINE MIR -50 212 9 833 306 31 58 chr1 43164783 43165074 -239028590 - L2 LINE L2 0 3272 2990 1063 184 11 5 chr1 43166826 43167011 -239026653 - MER5A DNA MER1_type 0 189 4 2154 80 0 0 chr1 43167157 43167432 -239026232 + AluSq SINE Alu 13 287 -26 272 275 235 13 chr1 43167830 43167979 -239025685 + MIR3 SINE MIR 16 197 -11 300 233 113 60 chr1 43168760 43168910 -239024754 + L1ME4a LINE L1 5960 6117 -4 329 256 178 0 chr1 43169871 43169961 -239023703 - L2 LINE L2 -4 3309 3204 * 332 362 0 0 chr1 43169959 43170075 -239023589 - MIR3 SINE MIR -16 192 77 341 296 104 85 chr1 43170131 43170391 -239023273 + L2 LINE L2 2959 3223 -49 691 284 58 9 chr1 43170399 43170624 -239023040 - MIR SINE MIR -7 255 20 399 250 0 0 chr1 43170641 43170713 -239022951 + L2 LINE L2 3161 3232 -40 387 297 9 9 chr1 43170719 43170830 -239022834 - MLT1F LTR MaLR -429 113 3 196 236 0 36 chr1 43172603 43172658 -239021006 + L2 LINE L2 2904 2956 -316 1028 59 0 52 chr1 43172937 43173111 -239020553 + AluY SINE Alu 155 311 0 368 303 28 21 chr1 43173125 43173270 -239020394 - MIR3 SINE MIR -3 205 60 356 212 203 17 chr1 43173501 43173619 -239020045 - MIR SINE MIR -46 216 77 193 238 48 0 chr1 43173684 43173726 -239019938 - MIR SINE MIR -123 85 42 1918 154 3 3 chr1 43173730 43174041 -239019623 - AluJb SINE Alu -1 311 1 556 214 0 0 chr1 43174325 43174451 -239019213 - L1M4 LINE L1 -1057 5089 4964 266 236 0 0 chr1 43174467 43174522 -239019142 + MLT1C LTR MaLR 413 467 0 3054 194 2 11 chr1 43174690 43175315 -239018349 - L1M4 LINE L1 -3177 2969 2351 240 111 0 0 chr1 43175497 43175533 -239018131 + (A)n Simple_repeat Simple_repeat 1 36 0 1760 188 93 19 chr1 43177199 43177629 -239016035 - MLT1C LTR MaLR 0 467 6 287 376 23 35 chr1 43177854 43178027 -239015637 - MIR SINE MIR -70 192 22 343 306 37 46 chr1 43178168 43178276 -239015388 - L2 LINE L2 -50 3222 3116 621 217 58 116 chr1 43178437 43178659 -239015005 + L1MC4 LINE L1 7687 7880 -162 198 103 0 0 chr1 43178659 43178688 -239014976 + (TG)n Simple_repeat Simple_repeat 2 30 0 621 217 58 116 chr1 43178688 43178843 -239014821 + L1MC4 LINE L1 7880 8042 0 250 255 202 45 chr1 43179047 43179290 -239014374 - L2 LINE L2 -284 2988 2721 314 291 111 60 chr1 43180037 43180262 -239013402 - L2 LINE L2 -906 2408 2161 2391 49 0 0 chr1 43180262 43180550 -239013114 + AluY SINE Alu 21 308 -3 314 291 111 60 chr1 43180550 43180640 -239013024 - L2 LINE L2 -1153 2161 2077 760 267 63 121 chr1 43181317 43181782 -239011882 + MLT1J LTR MaLR 1 433 -78 2199 103 7 0 chr1 43181782 43182083 -239011581 - AluSg1 SINE Alu -6 303 1 760 267 63 121 chr1 43182083 43182153 -239011511 + MLT1J LTR MaLR 433 505 -6 261 340 54 14 chr1 43182166 43182313 -239011351 - L2 LINE L2 -336 2977 2825 2348 171 17 12 chr1 43182446 43182860 -239010804 + MER47B DNA MER2_type 3 418 0 204 361 41 33 chr1 43183123 43183245 -239010419 + L2 LINE L2 3179 3301 -12 282 287 107 33 chr1 43185235 43185357 -239008307 - MIR SINE MIR -51 211 81 1266 148 14 31 chr1 43185454 43185677 -239007987 - MER20 DNA MER1_type 0 219 1 262 304 185 22 chr1 43186088 43186223 -239007441 + MIR SINE MIR 56 212 -50 2067 113 0 0 chr1 43186293 43186621 -239007043 - AluSx SINE Alu 0 328 1 587 271 149 61 chr1 43186650 43187335 -239006329 + L1MC4a LINE L1 5317 6061 -1747 367 295 64 52 chr1 43188200 43188375 -239005289 - MIR SINE MIR -56 206 30 1914 151 0 7 chr1 43188789 43189094 -239004570 + AluY SINE Alu 1 303 -8 1546 239 68 7 chr1 43189155 43189594 -239004070 - MLT1C LTR MaLR 0 467 2 225 0 0 0 chr1 43189980 43190005 -239003659 + (T)n Simple_repeat Simple_repeat 1 25 0 1916 100 24 0 chr1 43191264 43191553 -239002111 - AluSg SINE Alu -14 296 1 273 224 30 0 chr1 43191957 43192024 -239001640 - MIR3 SINE MIR -24 184 116 187 264 45 129 chr1 43192083 43192238 -239001426 - L2 LINE L2 -58 3214 3073 280 215 13 51 chr1 43194187 43194266 -238999398 - MIR3 SINE MIR -35 173 98 796 211 28 22 chr1 43195670 43195850 -238997814 + AluJo SINE Alu 120 300 -12 910 214 124 9 chr1 43196036 43196246 -238997418 + MIR SINE MIR 29 262 0 655 267 115 58 chr1 43196435 43197001 -238996663 - MLT1L LTR MaLR 0 615 18 359 281 20 60 chr1 43197005 43197276 -238996388 - L1MC4a LINE L1 -349 5822 5670 204 158 0 0 chr1 43197354 43197392 -238996272 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 307 331 79 31 chr1 43197477 43197604 -238996060 - MIR3 SINE MIR -61 147 15 260 317 252 9 chr1 43197863 43198093 -238995571 - L3 LINE CR1 -11 1566 1281 336 273 67 147 chr1 43198209 43198384 -238995280 + L2 LINE L2 2902 3033 -239 2177 107 10 0 chr1 43198384 43198683 -238994981 - AluSx SINE Alu -10 302 1 336 273 67 147 chr1 43198683 43198881 -238994783 + L2 LINE L2 3033 3245 -27 237 323 0 11 chr1 43198920 43199013 -238994651 + A-rich Low_complexity Low_complexity 2 93 0 746 218 66 105 chr1 43199485 43199865 -238993799 - L2 LINE L2 0 3313 2949 682 286 67 19 chr1 43200161 43200371 -238993293 + MIR SINE MIR 8 227 -35 707 209 163 77 chr1 43200371 43200696 -238992968 + MLT1A1 LTR MaLR 1 353 -12 344 261 87 9 chr1 43200939 43201054 -238992610 - L1MC4a LINE L1 -1127 5019 4896 346 213 85 123 chr1 43201055 43201290 -238992374 + L2 LINE L2 3088 3313 0 255 327 0 26 chr1 43252273 43252429 -238941235 + GA-rich Low_complexity Low_complexity 1 152 0 193 274 141 52 chr1 43252942 43253077 -238940587 + MIR3 SINE MIR 4 150 -58 * 259 177 25 89 chr1 43253044 43253123 -238940541 + MIR SINE MIR 117 190 -72 653 230 152 6 chr1 43253207 43253372 -238940292 - MIR SINE MIR -50 212 24 307 355 16 16 chr1 43253386 43253507 -238940157 - MIR SINE MIR -97 165 45 194 250 141 31 chr1 43253521 43253585 -238940079 + MIR SINE MIR 20 90 -118 208 167 0 48 chr1 43253663 43253705 -238939959 + L2 LINE L2 3267 3306 -7 * 772 308 203 10 chr1 43253679 43254331 -238939333 - L2 LINE L2 -7 3306 2530 260 327 18 0 chr1 43255404 43255514 -238938150 + L2 LINE L2 2869 2980 -333 564 303 75 45 chr1 43255759 43256092 -238937572 + L3 LINE CR1 687 1029 -548 1689 129 23 4 chr1 43256260 43256516 -238937148 + AluJo SINE Alu 28 288 -24 365 232 95 11 chr1 43256518 43256613 -238937051 + L3 LINE CR1 1396 1498 -79 1030 259 241 30 chr1 43256618 43256795 -238936869 + L2 LINE L2 2821 2959 -354 6251 71 37 7 chr1 43256795 43257877 -238935787 + L1PA13 LINE L1 5048 6163 0 1030 259 241 30 chr1 43257877 43258105 -238935559 + L2 LINE L2 2959 3312 -1 184 243 54 54 chr1 43258309 43258383 -238935281 - MIR SINE MIR -60 202 129 182 280 220 0 chr1 43258797 43258915 -238934749 - MIR3 SINE MIR -32 176 33 180 125 62 0 chr1 43259643 43259675 -238933989 - MIR SINE MIR -8 254 221 605 169 28 63 chr1 43259816 43259958 -238933706 + L2 LINE L2 3172 3308 -5 302 220 34 0 chr1 43260029 43260088 -238933576 + L2 LINE L2 3195 3255 -17 845 188 74 0 chr1 43260639 43260815 -238932849 - MER20 DNA MER1_type 0 219 31 336 305 116 42 chr1 43261056 43261246 -238932418 - L2 LINE L2 -8 3264 3061 281 308 15 0 chr1 43261240 43261305 -238932359 + L2 LINE L2 3193 3258 -14 * 418 333 78 21 chr1 43261460 43261686 -238931978 - L2 LINE L2 -340 2974 2727 2280 99 3 0 chr1 43261686 43261978 -238931686 + AluSg SINE Alu 1 293 -17 418 333 78 21 chr1 43261978 43262033 -238931631 - L2 LINE L2 -587 2727 2677 445 276 66 17 chr1 43262418 43262599 -238931065 + Charlie2 DNA MER1_type 57 246 -2616 2472 77 3 0 chr1 43262755 43263052 -238930612 + AluY SINE Alu 1 298 -13 1141 82 0 0 chr1 43263067 43263202 -238930462 + AluSq/x SINE Alu 1 135 -178 1609 96 0 0 chr1 43263202 43263401 -238930263 + AluSq SINE Alu 2 200 -113 1421 129 26 34 chr1 43263514 43263747 -238929917 + AluSg/x SINE Alu 67 297 -13 2230 101 3 10 chr1 43264022 43264329 -238929335 + AluSc SINE Alu 1 305 -4 2424 86 3 0 chr1 43264480 43264781 -238928883 + AluSx SINE Alu 1 302 -10 525 141 0 0 chr1 43264792 43264870 -238928794 + AluS SINE Alu 2 79 -234 1942 89 0 0 chr1 43264871 43265108 -238928556 - AluSq SINE Alu -76 237 1 1685 196 0 13 chr1 43265241 43265552 -238928112 + AluJb SINE Alu 1 307 -5 240 263 66 0 chr1 43267843 43267919 -238925745 + MIR SINE MIR 150 230 -32 623 249 62 51 chr1 43269939 43270105 -238923559 - L2 LINE L2 -49 3264 3092 1543 162 70 3 chr1 43270105 43270389 -238923275 + AluJb SINE Alu 1 303 -9 623 249 62 51 chr1 43270389 43270479 -238923185 - L2 LINE L2 -221 3092 3005 1835 121 4 4 chr1 43270594 43270851 -238922813 - AluSx SINE Alu -47 265 9 3018 3 0 0 chr1 43270988 43271305 -238922359 - AluYb8 SINE Alu -1 317 1 578 215 74 0 chr1 43271320 43271441 -238922223 - FLAM_C SINE Alu -3 130 1 1587 167 44 15 chr1 43271467 43271619 -238922045 - AluJb SINE Alu -23 289 124 2533 68 0 13 chr1 43271619 43271930 -238921734 - AluY SINE Alu -4 307 1 1587 167 44 15 chr1 43271930 43272047 -238921617 - AluJb SINE Alu -188 124 12 2391 101 3 0 chr1 43272429 43272735 -238920929 + AluSp SINE Alu 1 307 -6 2356 67 0 3 chr1 43272875 43273193 -238920471 - AluY SINE Alu 0 317 1 363 304 54 22 chr1 43273508 43273692 -238919972 + L2 LINE L2 2509 2698 -616 396 360 36 28 chr1 43273876 43274126 -238919538 + L2 LINE L2 2999 3250 -22 2094 127 0 7 chr1 43274352 43274652 -238919012 - AluSg SINE Alu -12 298 1 2273 105 0 26 chr1 43275244 43275550 -238918114 + AluSg SINE Alu 1 298 -12 2380 96 3 0 chr1 43275611 43275914 -238917750 + AluSq SINE Alu 1 304 -9 202 365 0 16 chr1 43276040 43276103 -238917561 + MER91 DNA MER1_type 78 139 -1 1577 187 17 10 chr1 43276143 43276442 -238917222 - AluJb SINE Alu -11 301 1 353 307 59 20 chr1 43276549 43276702 -238916962 - MIR SINE MIR -41 221 63 443 261 14 29 chr1 43278294 43278432 -238915232 + MIR SINE MIR 71 206 -56 186 337 0 53 chr1 43279114 43279209 -238914455 + L3 LINE CR1 436 525 -1052 231 140 60 0 chr1 43279275 43279325 -238914339 + L3 LINE CR1 633 685 -892 222 291 87 39 chr1 43279361 43279488 -238914176 + MIR SINE MIR 104 236 -26 243 265 133 60 chr1 43279520 43279686 -238913978 + L3 LINE CR1 689 866 -711 539 219 158 27 chr1 43279921 43279984 -238913680 - MER3 DNA MER1_type 0 209 156 2449 82 0 0 chr1 43279984 43280288 -238913376 + AluSc SINE Alu 5 308 -1 539 219 158 27 chr1 43280288 43280407 -238913257 - MER3 DNA MER1_type -53 156 3 531 279 152 19 chr1 43280410 43280570 -238913094 + L3 LINE CR1 1180 1317 -260 2577 30 0 17 chr1 43280570 43280870 -238912794 - AluY SINE Alu -16 295 1 531 279 152 19 chr1 43280870 43281031 -238912633 + L3 LINE CR1 1317 1544 -33 190 208 21 21 chr1 43281005 43281053 -238912611 + MIR3 SINE MIR 146 193 -15 * 217 222 0 16 chr1 43282178 43282241 -238911423 + G-rich Low_complexity Low_complexity 2 63 0 23 33 0 0 chr1 43282389 43282419 -238911245 + GC_rich Low_complexity Low_complexity 1 30 0 2253 82 7 13 chr1 43283015 43283318 -238910346 - AluSx SINE Alu -11 301 1 2158 118 3 0 chr1 43283759 43284056 -238909608 - AluSx SINE Alu -12 300 3 27 0 0 0 chr1 43285125 43285152 -238908512 + AT_rich Low_complexity Low_complexity 1 27 0 190 191 0 0 chr1 43285264 43285306 -238908358 - L2 LINE L2 -10 3303 3262 490 239 69 0 chr1 43285423 43285553 -238908111 - MIR SINE MIR -67 195 57 21 0 0 0 chr1 43285603 43285624 -238908040 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 43285793 43285814 -238907850 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr1 43287037 43287088 -238906576 + AT_rich Low_complexity Low_complexity 1 51 0 2377 99 0 3 chr1 43287368 43287670 -238905994 + AluSx SINE Alu 1 301 -11 2439 76 0 3 chr1 43287971 43288272 -238905392 - AluSp SINE Alu -13 300 1 517 270 72 36 chr1 43288589 43288867 -238904797 - L2 LINE L2 -18 3295 3008 615 219 31 0 chr1 43290770 43290898 -238902766 + FLAM_C SINE Alu 1 132 -1 297 0 0 0 chr1 43291194 43291227 -238902437 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2286 79 0 17 chr1 43291227 43291511 -238902153 - AluY SINE Alu -32 279 1 2236 108 0 7 chr1 43291511 43291816 -238901848 - AluSg SINE Alu -7 303 1 2328 98 3 3 chr1 43292028 43292334 -238901330 - AluSx SINE Alu -6 306 1 693 146 0 102 chr1 43292375 43292512 -238901152 + FRAM SINE Alu 1 119 -57 1367 150 0 75 chr1 43292512 43292617 -238901047 - AluJb SINE Alu -78 234 123 1510 175 113 0 chr1 43292617 43292891 -238900773 - AluJb SINE Alu -7 305 1 1367 150 0 75 chr1 43292891 43293038 -238900626 - AluJb SINE Alu -189 123 1 1710 146 49 3 chr1 43293689 43293976 -238899688 - AluJb SINE Alu -12 300 1 190 146 36 55 chr1 43294054 43294109 -238899555 + MIR SINE MIR 135 188 -74 279 0 0 0 chr1 43294278 43294309 -238899355 + (TG)n Simple_repeat Simple_repeat 2 32 0 633 167 0 0 chr1 43294312 43294408 -238899256 - AluJ/FLAM SINE Alu -211 101 6 2099 119 12 35 chr1 43294601 43294920 -238898744 - AluSx SINE Alu 0 312 1 7109 62 18 0 chr1 43296105 43297071 -238896593 - L1PA7 LINE L1 -3 6151 5183 23 0 0 0 chr1 43297921 43297944 -238895720 + AT_rich Low_complexity Low_complexity 1 23 0 2432 64 7 0 chr1 43298007 43298302 -238895362 - AluY SINE Alu -14 297 1 1278 209 57 14 chr1 43298409 43298692 -238894972 - AluJo SINE Alu -17 295 1 971 284 67 37 chr1 43298794 43299332 -238894332 - L1ME1 LINE L1 -234 5932 5379 2343 90 0 0 chr1 43299446 43299746 -238893918 - AluY SINE Alu -7 304 5 1201 71 0 0 chr1 43299746 43299886 -238893778 - AluY SINE Alu -171 140 1 421 198 0 11 chr1 43299898 43299989 -238893675 - FLAM_C SINE Alu -3 140 51 585 155 0 0 chr1 43300091 43300220 -238893444 + T-rich Low_complexity Low_complexity 1 129 0 1466 155 13 4 chr1 43300229 43300461 -238893203 + AluJo SINE Alu 65 298 -14 908 182 153 37 chr1 43300609 43300989 -238892675 - L1MC5 LINE L1 -30 7931 7508 2449 82 0 7 chr1 43301660 43301965 -238891699 - AluY SINE Alu -8 303 1 281 281 73 0 chr1 43304325 43304421 -238889243 + MER94 DNA DNA 1 103 -31 210 261 0 0 chr1 43304878 43304924 -238888740 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 2403 83 3 16 chr1 43305259 43305573 -238888091 - AluSp SINE Alu -1 312 3 399 282 190 0 chr1 43305676 43305839 -238887825 - MIR SINE MIR -42 220 27 488 235 54 13 chr1 43305940 43306089 -238887575 - MER103 DNA DNA -2 164 10 2039 127 10 16 chr1 43306938 43307245 -238886419 - AluJo SINE Alu -7 305 1 2284 103 0 3 chr1 43307566 43307858 -238885806 - AluSx SINE Alu -21 291 1 495 250 78 29 chr1 43309173 43309377 -238884287 - MIR SINE MIR -18 244 31 1064 274 102 18 chr1 43309535 43309918 -238883746 + MLT1J2 LTR MaLR 36 450 0 262 210 86 0 chr1 43310698 43310779 -238882885 - MER34 LTR ERV1 0 542 455 3455 143 48 51 chr1 43310812 43310874 -238882790 - MER39 LTR ERV1 -64 643 582 2344 94 3 7 chr1 43310874 43311182 -238882482 + AluSq SINE Alu 1 307 -6 3455 143 48 51 chr1 43311182 43311602 -238882062 - MER39 LTR ERV1 -125 582 161 1623 143 92 27 chr1 43311602 43311895 -238881769 - AluJb SINE Alu 0 312 1 3455 143 48 51 chr1 43311895 43312056 -238881608 - MER39 LTR ERV1 -546 161 1 462 252 9 0 chr1 43312388 43312503 -238881161 - L2 LINE L2 0 3313 3198 264 224 0 30 chr1 43312530 43312597 -238881067 - MIR SINE MIR -70 138 74 2386 85 7 3 chr1 43312812 43313106 -238880558 - AluSq SINE Alu -18 295 1 360 287 70 0 chr1 43313229 43313358 -238880306 + L1ME LINE L1 5394 5531 -590 326 214 24 48 chr1 43313785 43313869 -238879795 + MER5B DNA MER1_type 2 83 -95 1930 150 61 3 chr1 43313870 43314197 -238879467 - MER7A DNA MER2_type -1 345 2 237 108 0 0 chr1 43314704 43314741 -238878923 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 203 279 15 29 chr1 43317299 43317367 -238876297 - MIR SINE MIR -88 120 54 553 282 25 98 chr1 43317421 43317607 -238876057 + MIR SINE MIR 6 204 -58 2212 79 0 55 chr1 43317607 43317935 -238875729 - AluSg SINE Alu 0 310 1 2063 112 10 3 chr1 43317938 43318243 -238875421 - AluSx SINE Alu -5 307 1 553 282 25 98 chr1 43318243 43318329 -238875335 + MIR SINE MIR 206 262 0 234 228 35 18 chr1 43318347 43318404 -238875260 - MIR SINE MIR -65 197 140 438 252 126 8 chr1 43320703 43320822 -238872842 - MIR3 SINE MIR -35 173 41 335 262 62 49 chr1 43321026 43321230 -238872434 - L1ME3 LINE L1 -1 6161 5963 405 184 122 0 chr1 43321272 43321370 -238872294 - L1ME3 LINE L1 -208 5962 5853 239 298 96 19 chr1 43321700 43321804 -238871860 + L2 LINE L2 3197 3308 -5 27 0 0 0 chr1 43322434 43322461 -238871203 + AT_rich Low_complexity Low_complexity 1 27 0 194 167 42 0 chr1 43324570 43324618 -238869046 - MIR SINE MIR -73 135 86 909 284 34 0 chr1 43326375 43326614 -238867050 - MIR SINE MIR -14 248 2 295 330 128 16 chr1 43327867 43328055 -238865609 + MIR SINE MIR 4 212 -50 1482 87 5 0 chr1 43328910 43329145 -238864519 + AluSc SINE Alu 86 321 0 1265 149 60 16 chr1 43329233 43329482 -238864182 - L1MB3 LINE L1 -47 6136 5877 1171 117 22 6 chr1 43329483 43329663 -238864001 - LTR1B LTR ERV1 -361 465 283 1192 123 0 0 chr1 43329663 43329842 -238863822 - L1MB3 LINE L1 -318 5865 5687 3656 147 45 47 chr1 43329854 43330616 -238863048 - LTR1B LTR ERV1 -2 783 1 943 183 0 0 chr1 43330751 43330915 -238862749 + FRAM SINE Alu 1 164 -2 511 280 65 35 chr1 43330916 43331116 -238862548 - MIR SINE MIR -56 206 1 180 297 87 80 chr1 43331175 43331461 -238862203 - L2 LINE L2 -160 3112 2825 200 262 33 16 chr1 43331507 43331568 -238862096 - MIR SINE MIR -117 145 84 1854 136 35 0 chr1 43331936 43332223 -238861441 - AluSx SINE Alu -15 297 1 27 0 0 0 chr1 43332228 43332255 -238861409 + AT_rich Low_complexity Low_complexity 1 27 0 1777 163 3 3 chr1 43332266 43332566 -238861098 + AluJb SINE Alu 1 300 -12 227 297 109 18 chr1 43332615 43332809 -238860855 + MIR SINE MIR 4 262 0 240 246 33 0 chr1 43333048 43333109 -238860555 - L2 LINE L2 -1 3312 3250 307 266 48 16 chr1 43334288 43334412 -238859252 - L2 LINE L2 -212 3060 2933 384 232 75 70 chr1 43334559 43334806 -238858858 + L2 LINE L2 2747 2994 -278 2369 61 0 26 chr1 43334806 43335117 -238858547 - AluY SINE Alu -8 303 1 4301 172 86 9 chr1 43335196 43336510 -238857154 - L1MB5 LINE L1 -19 6155 4735 332 275 153 37 chr1 43336933 43337122 -238856542 - MIR SINE MIR -31 231 21 231 36 0 0 chr1 43337348 43337376 -238856288 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 670 258 62 58 chr1 43338283 43338335 -238855329 - MIR SINE MIR -17 245 195 2036 86 41 0 chr1 43338335 43338625 -238855039 - AluSx SINE Alu -10 302 1 670 258 62 58 chr1 43338625 43338797 -238854867 - MIR SINE MIR -67 195 20 292 200 40 0 chr1 43339191 43339266 -238854398 - L1MC4a LINE L1 -1918 5890 5813 7903 160 11 116 chr1 43339318 43341133 -238852531 - MER52A LTR ERV1 0 1755 133 * 14015 117 73 30 chr1 43341132 43342835 -238850829 + Tigger1 DNA MER2_type 14 1845 -573 909 96 22 0 chr1 43342835 43342971 -238850693 - L1MA3 LINE L1 0 6305 6167 14015 117 73 30 chr1 43342971 43343572 -238850092 + Tigger1 DNA MER2_type 1845 2418 0 564 267 84 99 chr1 43343730 43343962 -238849702 - L1MC4a LINE L1 -382 5739 5505 2159 108 0 3 chr1 43343962 43344268 -238849396 + AluSq SINE Alu 1 305 -8 564 267 84 99 chr1 43344268 43344561 -238849103 - L1MC4a LINE L1 -616 5505 5257 434 307 49 36 chr1 43344761 43345274 -238848390 - L1MC4a LINE L1 -1082 5064 4542 2162 86 3 13 chr1 43345274 43345576 -238848088 - AluY SINE Alu -12 299 1 434 307 49 36 chr1 43345576 43345593 -238848071 - L1MC4a LINE L1 -1604 4542 4527 545 305 54 24 chr1 43345621 43346007 -238847657 + MLT1I LTR MaLR 1 409 0 417 330 88 22 chr1 43346010 43346237 -238847427 - L1MC4a LINE L1 -1669 4477 4236 267 79 0 0 chr1 43346552 43346590 -238847074 + (T)n Simple_repeat Simple_repeat 1 38 0 247 339 9 0 chr1 43346629 43346738 -238846926 - L1MC4a LINE L1 -2006 4140 4031 337 250 33 8 chr1 43346759 43346879 -238846785 - L1MC4 LINE L1 -1 8041 7919 899 227 12 51 chr1 43347037 43347293 -238846371 - L1ME2 LINE L1 -10 6154 5909 1406 206 50 39 chr1 43347318 43347346 -238846318 - L1ME2 LINE L1 -343 5821 5795 1749 220 13 24 chr1 43347346 43347724 -238845940 + MLT1A2 LTR MaLR 1 374 0 1406 206 50 39 chr1 43347724 43348055 -238845609 - L1ME2 LINE L1 -369 5795 5458 761 178 0 0 chr1 43348080 43348198 -238845466 - FLAM_C SINE Alu -15 118 1 326 325 35 60 chr1 43348229 43348632 -238845032 - L1MC4a LINE L1 -2148 3998 3606 503 214 78 140 chr1 43348781 43349038 -238844626 + MIR SINE MIR 3 243 -19 210 91 0 0 chr1 43349470 43349503 -238844161 + (CTTAT)n Simple_repeat Simple_repeat 5 37 0 390 304 0 16 chr1 43349599 43349724 -238843940 + L3 LINE CR1 1415 1537 -40 519 299 51 11 chr1 43349762 43349939 -238843725 + MIR SINE MIR 28 211 -51 356 121 36 48 chr1 43353863 43353946 -238839718 - MER3 DNA MER1_type 0 209 128 2030 114 0 0 chr1 43353986 43354276 -238839388 - AluSx SINE Alu -22 290 1 2505 235 12 24 chr1 43354295 43354870 -238838794 + MER74B LTR ERVL 55 622 0 1798 70 106 4 chr1 43354870 43355156 -238838508 - AluY SINE Alu 0 312 1 252 315 115 36 chr1 43355241 43355406 -238838258 - L2 LINE L2 -199 3073 2896 778 218 245 58 chr1 43355679 43356183 -238837481 + MLT1G LTR MaLR 1 590 0 1800 177 0 0 chr1 43356744 43357054 -238836610 - AluJo SINE Alu -2 310 1 484 238 107 30 chr1 43357064 43357232 -238836432 - MIR SINE MIR -13 249 69 203 162 0 27 chr1 43357414 43357451 -238836213 + MIR SINE MIR 83 118 -90 278 320 21 10 chr1 43360149 43360246 -238833418 - L2 LINE L2 -602 2712 2615 307 300 33 8 chr1 43360326 43360446 -238833218 - L2 LINE L2 -867 2447 2325 538 241 48 21 chr1 43360454 43360599 -238833065 + MER45A DNA AcHobo 4 152 -26 345 317 74 15 chr1 43360612 43360814 -238832850 - L2 LINE L2 -996 2318 2105 197 71 0 0 chr1 43361051 43361079 -238832585 - L2 LINE L2 0 3313 3286 1011 98 0 0 chr1 43361079 43361212 -238832452 + FLAM_C SINE Alu 1 133 0 742 188 5 92 chr1 43361226 43361433 -238832231 - L2 LINE L2 -12 3301 3113 281 319 110 26 chr1 43361544 43361735 -238831929 - MLT1K LTR MaLR -180 408 202 399 316 57 19 chr1 43361745 43361903 -238831761 - MIR SINE MIR -76 186 23 363 291 92 35 chr1 43362057 43362198 -238831466 - MIR3 SINE MIR 0 208 60 715 297 16 39 chr1 43362414 43362670 -238830994 - MIR SINE MIR 0 262 13 2316 74 7 0 chr1 43362711 43363010 -238830654 + AluY SINE Alu 1 301 -10 684 70 10 30 chr1 43362918 43363018 -238830646 + AluY SINE Alu 209 306 -5 515 272 39 115 chr1 43363390 43363669 -238829995 - MIR SINE MIR -1 261 4 226 305 76 9 chr1 43363699 43363804 -238829860 - MIR SINE MIR -77 131 20 662 261 48 45 chr1 43364191 43364429 -238829235 - MIR SINE MIR -6 256 12 2027 134 0 0 chr1 43364429 43364727 -238828937 - AluJb SINE Alu -9 303 6 707 304 18 84 chr1 43364973 43365308 -238828356 - L2 LINE L2 -7 3265 2953 198 238 119 0 chr1 43365325 43365367 -238828297 - L3 LINE CR1 -134 1443 1397 208 246 323 0 chr1 43365371 43365436 -238828228 - MIR SINE MIR -160 102 17 714 277 27 5 chr1 43365441 43365629 -238828035 + MLT1L LTR MaLR 310 501 -114 2343 75 0 3 chr1 43365646 43365941 -238827723 - AluY SINE Alu -17 294 1 584 247 37 74 chr1 43365973 43366205 -238827459 + MIR SINE MIR 39 260 -2 288 287 38 64 chr1 43366363 43366520 -238827144 - L2 LINE L2 -224 3048 2896 410 248 54 40 chr1 43366688 43366837 -238826827 - MER103 DNA DNA -8 158 8 243 318 0 0 chr1 43367302 43367365 -238826299 + CT-rich Low_complexity Low_complexity 3 65 0 2099 114 0 16 chr1 43367534 43367881 -238825783 + AluSx SINE Alu 1 342 0 938 275 60 16 chr1 43368439 43368690 -238824974 - MIR SINE MIR 0 262 1 190 194 0 0 chr1 43368695 43368726 -238824938 - L2 LINE L2 -40 3232 3202 437 267 40 67 chr1 43368734 43368884 -238824780 - MIR SINE MIR -111 151 6 23 0 0 0 chr1 43368889 43368912 -238824752 + AT_rich Low_complexity Low_complexity 1 23 0 704 228 16 37 chr1 43369686 43369875 -238823789 + MIR SINE MIR 13 197 -65 695 137 0 0 chr1 43369878 43369980 -238823684 - FLAM_A SINE Alu -40 102 1 292 344 96 18 chr1 43370036 43370370 -238823294 + L2 LINE L2 1824 2183 -1131 685 201 47 53 chr1 43370375 43370544 -238823120 - AluJb SINE Alu -9 303 136 18426 30 0 0 chr1 43370558 43373492 -238820172 - L1PA4 LINE L1 0 6155 3219 190 333 29 0 chr1 43373492 43373591 -238820073 + L2 LINE L2 2191 2292 -1022 2121 195 25 39 chr1 43373766 43373965 -238819699 + MLT1D LTR MaLR 1 201 -304 2184 109 0 0 chr1 43373965 43374278 -238819386 + AluSq SINE Alu 1 313 0 2121 195 25 39 chr1 43374278 43374590 -238819074 + MLT1D LTR MaLR 201 505 0 1935 118 7 16 chr1 43374705 43375009 -238818655 - AluJb SINE Alu -11 301 1 667 84 0 0 chr1 43375084 43375167 -238818497 + AluJb SINE Alu 42 124 -188 295 239 34 11 chr1 43375349 43375437 -238818227 + AluSq/x SINE Alu 28 117 -186 433 149 0 120 chr1 43375455 43375630 -238818034 + AluSq SINE Alu 2 155 -158 180 0 26 79 chr1 43376124 43376162 -238817502 + (TAAAAA)n Simple_repeat Simple_repeat 3 38 0 1566 184 36 0 chr1 43376170 43376448 -238817216 + AluJb SINE Alu 1 288 -24 1819 171 0 3 chr1 43376459 43376763 -238816901 + AluJb SINE Alu 1 303 -9 923 281 12 24 chr1 43376763 43377012 -238816652 - MIR SINE MIR -14 248 3 975 175 5 25 chr1 43377085 43377285 -238816379 + Charlie2a DNA MER1_type 1467 1662 -1200 2070 118 0 7 chr1 43377400 43377696 -238815968 - AluSg SINE Alu -16 294 1 1936 100 10 23 chr1 43377697 43377997 -238815667 - AluSg SINE Alu -14 296 1 1859 153 10 3 chr1 43377998 43378305 -238815359 - AluSx SINE Alu -2 310 2 1960 136 3 0 chr1 43378350 43378645 -238815019 + AluSx SINE Alu 7 302 -10 215 247 101 56 chr1 43378726 43378815 -238814849 - MIR SINE MIR -96 112 20 832 286 113 38 chr1 43378879 43379438 -238814226 - L2 LINE L2 -86 3227 2621 1239 212 30 177 chr1 43379562 43379617 -238814047 - MLT1H1 LTR MaLR -9 546 485 1794 167 0 0 chr1 43379617 43379917 -238813747 + AluJb SINE Alu 6 305 -7 1239 212 30 177 chr1 43379917 43380499 -238813165 - MLT1H1 LTR MaLR -70 485 3 183 242 102 78 chr1 43380764 43380820 -238812844 - MER5A DNA MER1_type -11 178 125 2402 70 0 6 chr1 43380820 43381133 -238812531 - AluY SINE Alu 0 311 1 183 242 102 78 chr1 43381133 43381191 -238812473 - MER5A DNA MER1_type -64 125 61 388 302 195 0 chr1 43381191 43381340 -238812324 - MER5B DNA MER1_type 0 178 1 464 179 137 0 chr1 43381407 43381502 -238812162 - MER81 DNA DNA -1 113 6 317 322 110 7 chr1 43381938 43382084 -238811580 + MIR SINE MIR 24 184 -78 1719 147 0 43 chr1 43383268 43383594 -238810070 - AluJo SINE Alu 0 312 1 29 0 0 0 chr1 43383595 43383624 -238810040 + AT_rich Low_complexity Low_complexity 1 29 0 2110 92 4 0 chr1 43383627 43383930 -238809734 + AluSp SINE Alu 1 304 0 2296 83 0 6 chr1 43383931 43384244 -238809420 + AluY SINE Alu 1 311 0 284 173 0 0 chr1 43384265 43384317 -238809347 - Alu SINE Alu -3 299 248 627 304 63 5 chr1 43384413 43384620 -238809044 + MIR SINE MIR 28 246 -16 291 318 37 28 chr1 43384616 43384723 -238808941 - MIR SINE MIR -42 220 113 * 2455 50 0 0 chr1 43384928 43385228 -238808436 - AluY SINE Alu -11 300 1 274 288 0 0 chr1 43385291 43385350 -238808314 + polypyrimidine Low_complexity Low_complexity 1 59 0 728 117 0 10 chr1 43385401 43385504 -238808160 - U6 snRNA snRNA -5 102 1 1914 118 0 11 chr1 43385532 43385819 -238807845 - AluSx SINE Alu -28 284 1 560 236 40 117 chr1 43385821 43386147 -238807517 - LTR67 LTR ERVL -6 551 251 2092 92 0 60 chr1 43386843 43387158 -238806506 - AluSx SINE Alu -16 296 1 2014 138 7 0 chr1 43387406 43387710 -238805954 + AluSp SINE Alu 1 306 -7 2329 77 0 0 chr1 43387874 43388173 -238805491 - AluY SINE Alu -12 299 1 514 254 0 8 chr1 43388256 43388378 -238805286 + FLAM_C SINE Alu 16 136 -7 315 292 97 9 chr1 43388992 43389105 -238804559 + L3 LINE CR1 1285 1407 -170 486 274 80 20 chr1 43389113 43389372 -238804292 - L1MC/D LINE L1 -374 5747 5482 1336 191 7 10 chr1 43389387 43389680 -238803984 - AluSq SINE Alu -21 292 1 1780 153 3 7 chr1 43389932 43390227 -238803437 + AluJb SINE Alu 9 302 -10 185 116 0 70 chr1 43391001 43391044 -238802620 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 551 232 7 70 chr1 43391049 43391095 -238802569 - MIR SINE MIR 0 262 215 1546 137 111 7 chr1 43391095 43391366 -238802298 - AluSx SINE Alu -13 299 1 551 232 7 70 chr1 43391366 43391461 -238802203 - MIR SINE MIR -47 215 130 2261 152 112 68 chr1 43391462 43391579 -238802085 + L1MB5 LINE L1 5577 5687 -493 2379 64 0 29 chr1 43391579 43391892 -238801772 + AluY SINE Alu 2 305 -6 2261 152 112 68 chr1 43391892 43392025 -238801639 + L1MB5 LINE L1 5687 5813 -367 2130 111 3 3 chr1 43392025 43392331 -238801333 + AluSx SINE Alu 1 306 -6 2261 152 112 68 chr1 43392331 43392619 -238801045 + L1MB5 LINE L1 5813 6115 -65 1616 93 130 22 chr1 43392619 43392889 -238800775 + AluSg1 SINE Alu 1 299 -10 2261 152 112 68 chr1 43392889 43392959 -238800705 + L1MB5 LINE L1 6115 6180 0 238 309 10 72 chr1 43392964 43393061 -238800603 - MIR SINE MIR -136 126 36 334 208 88 56 chr1 43394005 43394130 -238799534 - MIR3 SINE MIR -48 160 32 2062 147 38 57 chr1 43394276 43394698 -238798966 - MLT2D LTR ERVL 0 414 1 325 175 0 25 chr1 43395096 43395176 -238798488 - L1MD3 LINE L1 0 7995 7918 2166 94 3 3 chr1 43395176 43395474 -238798190 + AluY SINE Alu 1 298 -13 264 346 6 25 chr1 43395640 43395802 -238797862 + CT-rich Low_complexity Low_complexity 3 161 0 1905 128 0 23 chr1 43396593 43396898 -238796766 + AluSx SINE Alu 15 312 0 268 197 23 98 chr1 43397131 43397263 -238796401 + Charlie7 DNA MER1_type 36 157 -2455 3660 166 33 68 chr1 43397263 43397868 -238795796 - L1MD1 LINE L1 -44 6198 5574 212 31 62 0 chr1 43397876 43397908 -238795756 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 1962 116 4 0 chr1 43397908 43398176 -238795488 - AluSg SINE Alu -19 291 20 3660 166 33 68 chr1 43398176 43398325 -238795339 - L1MD1 LINE L1 -668 5574 5421 4427 126 47 18 chr1 43398325 43399086 -238794578 + LTR1 LTR ERV1 3 785 0 3660 166 33 68 chr1 43399086 43399117 -238794547 - L1MD1 LINE L1 -821 5421 5439 2371 85 3 0 chr1 43399117 43399424 -238794240 - AluSp SINE Alu -5 308 1 3660 166 33 68 chr1 43399424 43399478 -238794186 - L1MD1 LINE L1 -802 5440 5386 3416 239 122 30 chr1 43399522 43399893 -238793771 - L1MD1 LINE L1 -746 5400 5065 835 189 0 57 chr1 43399893 43400068 -238793596 - FRAM SINE Alu -1 165 1 3416 239 122 30 chr1 43400068 43400082 -238793582 - L1MD1 LINE L1 -1081 5065 5054 2281 95 0 6 chr1 43400082 43400397 -238793267 - AluSq SINE Alu 0 313 1 3416 239 122 30 chr1 43400397 43400966 -238792698 - L1MD1 LINE L1 -1092 5054 4539 2327 74 0 0 chr1 43400966 43401262 -238792402 - AluY SINE Alu -15 296 1 3416 239 122 30 chr1 43401262 43401571 -238792093 - L1MD1 LINE L1 -1607 4539 4018 2131 111 0 3 chr1 43401571 43401869 -238791795 - AluSg SINE Alu -13 297 1 1823 151 17 10 chr1 43401888 43402187 -238791477 - AluSx SINE Alu -11 301 1 908 187 24 6 chr1 43402290 43402456 -238791208 + AluJo SINE Alu 1 169 -143 710 80 0 0 chr1 43402456 43402544 -238791120 - AluS SINE Alu -223 89 2 37 23 0 0 chr1 43402577 43402621 -238791043 + AT_rich Low_complexity Low_complexity 1 44 0 1225 138 10 0 chr1 43402724 43402919 -238790745 + AluJb SINE Alu 100 296 -16 237 263 168 0 chr1 43403283 43403378 -238790286 + L2 LINE L2 2933 3043 -270 213 233 163 47 chr1 43403984 43404070 -238789594 + L2 LINE L2 3218 3313 0 237 229 21 0 chr1 43405093 43405141 -238788523 - L2 LINE L2 -40 3232 3184 2130 47 0 0 chr1 43405217 43405472 -238788192 + AluY SINE Alu 55 309 -2 240 35 0 0 chr1 43405619 43405648 -238788016 + (TG)n Simple_repeat Simple_repeat 2 30 0 185 250 0 0 chr1 43406438 43406482 -238787182 - L2 LINE L2 -16 3256 3213 228 35 0 0 chr1 43406618 43406647 -238787017 + (CCA)n Simple_repeat Simple_repeat 3 31 0 182 356 34 0 chr1 43406663 43406722 -238786942 - L2 LINE L2 -16 3297 3237 266 258 25 83 chr1 43406724 43406772 -238786892 - MIR SINE MIR -11 251 202 2037 125 10 0 chr1 43406772 43407075 -238786589 - AluSx SINE Alu -6 306 1 266 258 25 83 chr1 43407075 43407121 -238786543 - MIR SINE MIR -60 202 163 2197 180 51 28 chr1 43407121 43407615 -238786049 + MLT1D LTR MaLR 1 505 0 266 258 25 83 chr1 43407615 43407639 -238786025 - MIR SINE MIR -99 163 139 660 179 57 0 chr1 43407654 43407777 -238785887 - MER31B LTR ERV1 0 466 337 2046 116 17 0 chr1 43407902 43408203 -238785461 - AluSc SINE Alu -3 306 1 562 174 18 9 chr1 43408204 43408313 -238785351 - MLT2D LTR ERVL -52 362 253 1984 177 14 49 chr1 43408567 43408932 -238784732 + MLT2D LTR ERVL 1 351 -63 2137 101 0 3 chr1 43408932 43409251 -238784413 + AluSx SINE Alu 1 318 0 1984 177 14 49 chr1 43409251 43409313 -238784351 + MLT2D LTR ERVL 351 414 0 228 388 8 8 chr1 43410029 43410158 -238783506 - L2 LINE L2 -419 2895 2767 2056 129 3 0 chr1 43411097 43411399 -238782265 - AluSx SINE Alu -9 303 1 213 315 19 0 chr1 43411476 43411530 -238782134 + MIR SINE MIR 30 84 -124 311 311 104 0 chr1 43411552 43411658 -238782006 - L2 LINE L2 -1 3271 3155 1282 219 72 53 chr1 43412638 43412999 -238780665 - MLT2F LTR ERVL -36 627 260 866 181 0 0 chr1 43413030 43413174 -238780490 - MLT2F LTR ERVL -517 146 3 893 183 82 82 chr1 43413177 43413276 -238780388 - LTR16C LTR ERVL -39 452 354 1761 117 87 0 chr1 43413276 43413542 -238780122 + AluSx SINE Alu 5 293 -19 2196 104 0 0 chr1 43413544 43413841 -238779823 + AluSx SINE Alu 1 297 -15 893 183 82 82 chr1 43413841 43414006 -238779658 - LTR16C LTR ERVL -137 354 185 377 298 50 66 chr1 43414555 43414736 -238778928 - MIR3 SINE MIR -7 201 24 766 293 56 9 chr1 43414918 43415150 -238778514 + MIR SINE MIR 20 262 0 2445 153 64 12 chr1 43415343 43415748 -238777916 - MSTB LTR MaLR 0 426 1 232 243 43 0 chr1 43415801 43415871 -238777793 - L1ME4a LINE L1 -44 6077 6005 294 251 153 12 chr1 43415894 43416057 -238777607 - L1ME4a LINE L1 -179 5942 5757 268 247 14 14 chr1 43416065 43416138 -238777526 + LTR33 LTR ERVL 1 73 -448 520 318 45 9 chr1 43416405 43416609 -238777055 - MIR SINE MIR -47 215 10 340 185 18 6 chr1 43416765 43416843 -238776821 - MLT1H LTR MaLR -414 135 16 219 323 185 28 chr1 43416909 43417272 -238776392 + L2 LINE L2 2611 3032 -240 2007 232 50 51 chr1 43417368 43418029 -238775635 + HsTC2a DNA MER2_type 1 662 -1238 1489 148 99 42 chr1 43418029 43418312 -238775352 - AluJb SINE Alu -12 300 2 2007 232 50 51 chr1 43418312 43418392 -238775272 + HsTC2a DNA MER2_type 662 741 -3 347 279 99 27 chr1 43418544 43418655 -238775009 - MIR SINE MIR -73 135 17 1083 239 118 17 chr1 43418661 43419156 -238774508 - MLT1L LTR MaLR -2 613 17 717 262 127 0 chr1 43419728 43419949 -238773715 + MIR SINE MIR 2 250 -12 577 283 88 81 chr1 43420220 43420854 -238772810 - L2 LINE L2 -67 3205 2561 355 329 48 12 chr1 43421154 43421321 -238772343 + MIR SINE MIR 86 258 -4 368 298 24 16 chr1 43421488 43421612 -238772052 + MIR3 SINE MIR 12 136 -72 423 171 11 23 chr1 43423229 43423317 -238770347 + MLT1I LTR MaLR 323 409 0 307 222 12 37 chr1 43423503 43423584 -238770080 - MLT1K LTR MaLR -352 236 158 2073 116 0 3 chr1 43424128 43424429 -238769235 + AluSq SINE Alu 1 300 -13 225 173 19 19 chr1 43424531 43424583 -238769081 - MLT1K LTR MaLR -342 246 195 1166 144 21 159 chr1 43424708 43425048 -238768616 - MLT1A1 LTR MaLR 0 365 73 2184 154 62 20 chr1 43425279 43425669 -238767995 - MSTB LTR MaLR 0 426 21 363 275 69 62 chr1 43425852 43426012 -238767652 + MIR3 SINE MIR 12 172 -36 771 268 23 57 chr1 43426041 43426306 -238767358 + MIR SINE MIR 2 257 -5 465 246 86 102 chr1 43427336 43427446 -238766218 - MIR SINE MIR -10 252 142 2149 106 0 0 chr1 43427446 43427748 -238765916 - AluSx SINE Alu -10 302 1 465 246 86 102 chr1 43427748 43427893 -238765771 - MIR SINE MIR -120 142 1 354 279 114 88 chr1 43427897 43428284 -238765380 + L2 LINE L2 2827 3223 -49 1583 99 63 16 chr1 43429717 43429969 -238763695 + L1PA11 LINE L1 5911 6174 0 193 196 82 103 chr1 43430158 43430255 -238763409 + L2 LINE L2 2968 3062 -251 390 207 27 54 chr1 43430814 43430925 -238762739 + MIR SINE MIR 91 198 -64 203 182 55 73 chr1 43431421 43431476 -238762188 - MER5B DNA MER1_type -35 143 90 350 322 18 18 chr1 43431697 43431868 -238761796 + L1ME4a LINE L1 5694 5864 -257 2408 51 0 26 chr1 43431944 43432257 -238761407 - AluY SINE Alu -6 305 1 204 304 167 14 chr1 43434101 43434239 -238759425 + L2 LINE L2 2590 2748 -566 284 333 62 8 chr1 43434332 43434461 -238759203 + L2 LINE L2 2924 3059 -213 253 306 57 62 chr1 43434467 43434537 -238759127 - L2 LINE L2 0 3313 3244 2905 114 16 21 chr1 43434537 43434967 -238758697 + MSTA LTR MaLR 1 428 0 253 306 57 62 chr1 43434967 43435105 -238758559 - L2 LINE L2 -69 3244 3106 261 207 11 58 chr1 43435685 43435772 -238757892 + LTR67 LTR ERVL 475 557 0 23 0 0 0 chr1 43436745 43436768 -238756896 + AT_rich Low_complexity Low_complexity 1 23 0 415 278 23 38 chr1 43437042 43437175 -238756489 - L2 LINE L2 0 3313 3183 * 889 284 108 13 chr1 43437173 43437554 -238756110 - L2 LINE L2 -571 2743 2327 317 311 10 10 chr1 43437912 43438015 -238755649 + MIR SINE MIR 10 112 -150 611 197 197 7 chr1 43438764 43438916 -238754748 - MER5A DNA MER1_type 0 189 9 377 176 77 33 chr1 43439022 43439113 -238754551 - MER103 DNA DNA -70 96 2 303 279 178 39 chr1 43439282 43439411 -238754253 + MIR SINE MIR 9 155 -107 905 98 30 12 chr1 43440280 43440444 -238753220 + CT-rich Low_complexity Low_complexity 2 168 0 1978 105 25 0 chr1 43440446 43440723 -238752941 - AluSx SINE Alu -28 284 1 282 241 138 44 chr1 43441164 43441338 -238752326 - MIR SINE MIR -50 212 30 275 71 24 0 chr1 43441930 43441972 -238751692 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 668 319 43 24 chr1 43443080 43443333 -238750331 - MIR SINE MIR -2 260 4 293 330 10 10 chr1 43443477 43443574 -238750090 + MIR3 SINE MIR 104 200 -8 272 301 189 20 chr1 43443958 43444111 -238749553 + MIR SINE MIR 46 224 -38 4822 47 5 10 chr1 43444126 43444720 -238748944 - LTR10C LTR ERV1 0 591 1 523 258 53 36 chr1 43444828 43445034 -238748630 + MIR SINE MIR 1 209 -53 219 273 30 0 chr1 43445125 43445191 -238748473 - MIR SINE MIR -57 205 138 460 308 102 32 chr1 43446185 43446524 -238747140 - L2 LINE L2 -255 3058 2708 2073 156 42 67 chr1 43446538 43447094 -238746570 + MLT2A2 LTR ERVL 1 554 0 183 156 0 0 chr1 43447946 43447978 -238745686 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 2020 90 7 24 chr1 43448145 43448435 -238745229 + AluSc SINE Alu 2 286 -23 818 244 64 30 chr1 43448478 43448712 -238744952 + MIR SINE MIR 20 261 -1 220 148 49 25 chr1 43448935 43449016 -238744648 + GA-rich Low_complexity Low_complexity 4 86 0 2274 46 0 0 chr1 43450105 43450432 -238743232 - AluY SINE Alu 0 327 1 435 283 123 32 chr1 43450633 43450852 -238742812 - MIR SINE MIR -22 240 2 414 258 186 43 chr1 43451020 43451465 -238742199 + L1ME4a LINE L1 5609 6117 -4 569 275 11 39 chr1 43452202 43452384 -238741280 + MIR SINE MIR 51 227 -35 1681 92 0 0 chr1 43452502 43452719 -238740945 + AluSx SINE Alu 20 236 -76 207 0 0 0 chr1 43452720 43452743 -238740921 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 559 271 101 19 chr1 43453021 43453228 -238740436 - MIR SINE MIR -27 235 12 343 280 160 80 chr1 43453360 43453573 -238740091 + MIR SINE MIR 14 248 -14 331 279 117 9 chr1 43453575 43453686 -238739978 + L2 LINE L2 3191 3313 0 323 291 64 21 chr1 43454818 43454959 -238738705 - MIR SINE MIR -96 166 20 396 0 0 0 chr1 43455271 43455315 -238738349 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1461 193 51 0 chr1 43456394 43456668 -238736996 - AluJb SINE Alu -24 288 1 912 281 146 21 chr1 43456689 43457066 -238736598 + LTR16B LTR ERVL 41 464 0 264 274 60 0 chr1 43457787 43457871 -238735793 + L2 LINE L2 1902 1990 -1324 2945 227 45 8 chr1 43457874 43458721 -238734943 - L1MEc LINE L1 -2403 3812 2935 216 0 0 0 chr1 43458727 43458751 -238734913 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 899 165 49 31 chr1 43461289 43461513 -238732151 - L1MEc LINE L1 -3274 2941 2714 3974 250 62 46 chr1 43461544 43461690 -238731974 - L1MEc LINE L1 -3967 2429 2287 2089 111 17 0 chr1 43461690 43461987 -238731677 - AluSx SINE Alu -10 302 1 3974 250 62 46 chr1 43461987 43462175 -238731489 - L1MEc LINE L1 -4109 2287 2103 303 54 429 0 chr1 43462175 43462231 -238731433 + MADE1 DNA Mariner 1 80 0 3974 250 62 46 chr1 43462231 43462720 -238730944 - L1MEc LINE L1 -4293 2103 1623 2326 102 10 7 chr1 43462720 43463023 -238730641 + AluSq SINE Alu 1 304 -9 3974 250 62 46 chr1 43463023 43464530 -238729134 - L1MEc LINE L1 -4773 1623 37 1645 297 81 54 chr1 43464530 43464929 -238728735 + L2 LINE L2 1980 2367 -946 2001 168 13 43 chr1 43464929 43465305 -238728359 - MLT1A1 LTR MaLR 0 365 1 1645 297 81 54 chr1 43465305 43465967 -238727697 + L2 LINE L2 2367 3068 -245 1400 217 93 31 chr1 43466039 43466510 -238727154 + MLT1H LTR MaLR 10 546 -3 278 248 34 26 chr1 43466578 43466695 -238726969 + L2 LINE L2 3127 3244 -69 181 304 127 0 chr1 43467452 43467531 -238726133 + L2 LINE L2 3225 3313 0 182 326 0 0 chr1 43467856 43467905 -238725759 - L2 LINE L2 -11 3261 3213 * 525 212 188 12 chr1 43467873 43468038 -238725626 - MIR SINE MIR -22 240 47 2301 119 3 0 chr1 43469127 43469429 -238724235 - AluSq SINE Alu -10 303 1 1143 183 68 52 chr1 43470743 43471159 -238722505 + MLT2B1 LTR ERVL 1 482 -38 543 31 0 0 chr1 43471159 43471224 -238722440 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1143 183 68 52 chr1 43471224 43471247 -238722417 + MLT2B1 LTR ERVL 482 503 -17 446 199 37 105 chr1 43471262 43471453 -238722211 - MER5B DNA MER1_type 0 178 1 306 341 16 28 chr1 43471530 43471712 -238721952 - MIR SINE MIR -56 206 27 233 234 0 0 chr1 43472045 43472092 -238721572 + L2 LINE L2 3221 3267 -5 252 282 126 0 chr1 43472131 43472234 -238721430 - MIR3 SINE MIR -89 119 4 590 260 68 6 chr1 43472305 43472482 -238721182 + MER117 DNA MER1_type 10 197 0 290 269 83 9 chr1 43472689 43472797 -238720867 + MIR SINE MIR 74 189 -73 627 263 42 5 chr1 43472859 43473049 -238720615 + MLT1H LTR MaLR 12 208 -341 368 225 21 84 chr1 43474770 43474857 -238718807 - MIR3 SINE MIR -63 145 69 1539 189 47 80 chr1 43474857 43475244 -238718420 + MLT1A2 LTR MaLR 1 374 0 368 225 21 84 chr1 43475244 43475298 -238718366 - MIR3 SINE MIR -139 69 13 187 0 121 0 chr1 43476182 43476215 -238717449 + CT-rich Low_complexity Low_complexity 5 41 0 1941 149 0 3 chr1 43477094 43477399 -238716265 - AluSx SINE Alu 0 304 1 4652 215 55 29 chr1 43477413 43478785 -238714879 - L1ME2 LINE L1 -10 6154 4702 2909 162 33 35 chr1 43478785 43479335 -238714329 + MER44D DNA MER2_type 1 604 -1 4652 215 55 29 chr1 43479335 43480105 -238713559 - L1ME2 LINE L1 -1462 4702 3954 783 271 82 36 chr1 43480226 43480886 -238712778 + L1ME LINE L1 5010 5698 -423 1810 114 0 0 chr1 43480912 43481149 -238712515 + AluSx SINE Alu 1 237 -75 218 256 0 0 chr1 43481354 43481397 -238712267 + L2 LINE L2 3211 3253 -19 311 161 60 31 chr1 43481422 43481527 -238712137 + HAL1b LINE L1 1232 1314 -34 546 109 43 11 chr1 43481533 43481625 -238712039 - L1MA4 LINE L1 -30 6270 6176 184 323 0 0 chr1 43481695 43481760 -238711904 - L2 LINE L2 -791 2523 2459 1724 133 4 0 chr1 43481883 43482146 -238711518 + L1PA13 LINE L1 5893 6156 -7 295 343 100 35 chr1 43482191 43482841 -238710823 - L2 LINE L2 -1021 2293 1602 381 275 35 49 chr1 43484429 43484571 -238709093 + L2 LINE L2 3133 3272 0 229 307 45 0 chr1 43484838 43484926 -238708738 + MIR SINE MIR 117 208 -54 2201 129 3 0 chr1 43484936 43485245 -238708419 - AluSx SINE Alu -2 310 1 522 248 66 7 chr1 43485453 43485590 -238708074 + MIR SINE MIR 6 150 -112 1904 278 60 51 chr1 43485612 43486419 -238707245 + L1ME3A LINE L1 4158 4956 -1214 2108 129 7 23 chr1 43486419 43486729 -238706935 - AluSx SINE Alu -7 305 1 1904 278 60 51 chr1 43486729 43487412 -238706252 + L1ME3A LINE L1 4956 5630 -540 1712 183 7 3 chr1 43487412 43487701 -238705963 + AluJb SINE Alu 1 290 -22 1904 278 60 51 chr1 43487701 43488224 -238705440 + L1ME3A LINE L1 5630 6147 -23 180 0 0 0 chr1 43488226 43488246 -238705418 + (TAA)n Simple_repeat Simple_repeat 3 22 0 296 238 183 24 chr1 43488686 43488812 -238704852 - MIR3 SINE MIR -30 178 33 1732 160 7 10 chr1 43489218 43489506 -238704158 - AluJo SINE Alu -20 292 6 1791 226 40 32 chr1 43489590 43490089 -238703575 - MLT1D LTR MaLR -2 503 1 1094 214 108 51 chr1 43490381 43490847 -238702817 - MLT1G1 LTR MaLR -9 540 1 289 259 9 60 chr1 43490854 43490970 -238702694 + L2 LINE L2 3153 3262 -10 765 270 5 5 chr1 43490996 43491196 -238702468 - MIR SINE MIR -48 214 15 202 297 63 45 chr1 43491491 43491602 -238702062 - L2 LINE L2 -468 2846 2734 362 296 40 24 chr1 43491889 43492014 -238701650 - MIR SINE MIR -111 151 25 822 228 6 0 chr1 43492148 43492306 -238701358 - MER45A DNA AcHobo -2 176 18 226 276 171 0 chr1 43493172 43493248 -238700416 - MIR SINE MIR 0 262 174 1995 142 0 0 chr1 43493339 43493645 -238700019 - AluSx SINE Alu 0 306 1 1943 190 6 33 chr1 43493664 43494027 -238699637 + MLT1A1 LTR MaLR 1 353 -12 249 301 27 0 chr1 43494063 43494136 -238699528 - L2 LINE L2 -64 3208 3134 931 130 4 146 chr1 43496018 43496272 -238697392 + LTR41 LTR ERVL 550 767 -6 497 254 165 22 chr1 43496324 43496548 -238697116 + LTR16C LTR ERVL 224 479 -12 1822 157 31 10 chr1 43496676 43496969 -238696695 - AluSg SINE Alu -11 299 1 207 337 12 0 chr1 43497311 43497394 -238696270 - MIR SINE MIR -14 248 165 266 145 113 0 chr1 43497478 43497540 -238696124 - MER104 DNA Tc2 -84 96 28 402 320 16 8 chr1 43497545 43497670 -238695994 - MIR SINE MIR -112 150 25 260 269 159 6 chr1 43498073 43498255 -238695409 - MIR SINE MIR -30 232 23 207 0 0 0 chr1 43498301 43498324 -238695340 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 186 297 58 113 chr1 43498747 43499111 -238694553 - L2 LINE L2 -11 3261 2918 965 268 107 9 chr1 43500468 43500804 -238692860 + MLT1J2 LTR MaLR 82 450 0 191 280 140 57 chr1 43501006 43501163 -238692501 + MIR SINE MIR 47 216 -46 266 287 154 7 chr1 43502324 43502460 -238691204 - L2 LINE L2 0 3272 3117 4066 20 0 0 chr1 43502639 43503175 -238690489 - L1PA3 LINE L1 -441 5714 5179 4180 21 0 2 chr1 43503175 43503649 -238690015 + L1PA3 LINE L1 5682 6155 0 3846 195 67 15 chr1 43503691 43504705 -238688959 - L1MD2 LINE L1 -218 6141 5092 1237 146 51 67 chr1 43504705 43504938 -238688726 - MER33 DNA MER1_type -2288 297 69 2368 107 3 0 chr1 43504938 43505246 -238688418 - AluSc SINE Alu 0 309 1 1237 146 51 67 chr1 43505246 43505325 -238688339 - MER33 DNA MER1_type -2516 69 1 940 302 43 41 chr1 43507431 43507795 -238685869 + LTR16B LTR ERVL 1 368 -96 2220 112 3 3 chr1 43507795 43508090 -238685574 - AluSx SINE Alu -17 295 1 940 302 43 41 chr1 43508090 43508188 -238685476 + LTR16B LTR ERVL 368 464 0 710 204 50 6 chr1 43508333 43508514 -238685150 + MIR SINE MIR 51 239 -23 403 268 110 77 chr1 43508840 43509232 -238684432 + MLT1K LTR MaLR 181 585 -3 2472 87 0 0 chr1 43509897 43510207 -238683457 - AluY SINE Alu -1 310 1 414 186 0 0 chr1 43510207 43510293 -238683371 + MER96B DNA MER1_type? 97 182 -235 812 271 50 76 chr1 43510359 43510820 -238682844 + MLT1J2 LTR MaLR 2 450 0 307 138 17 17 chr1 43510824 43510882 -238682782 + MLT1J2-int LTR MaLR 5 62 -1309 826 271 28 35 chr1 43511535 43511852 -238681812 + L1ME4a LINE L1 5555 5869 -252 252 250 96 51 chr1 43511887 43512043 -238681621 + L1ME4a LINE L1 5952 6114 -7 297 279 202 8 chr1 43512160 43512289 -238681375 + MIR3 SINE MIR 43 196 -12 704 337 31 64 chr1 43513281 43513732 -238679932 + L2 LINE L2 2837 3272 0 555 282 173 0 chr1 43514919 43515121 -238678543 + MIR SINE MIR 18 254 -8 488 283 8 0 chr1 43515136 43515256 -238678408 + L2 LINE L2 3189 3309 -4 1997 106 61 7 chr1 43515304 43515597 -238678067 - AluSx SINE Alu -3 309 1 229 313 130 0 chr1 43515816 43515931 -238677733 - L2 LINE L2 -2 3270 3141 1064 119 42 186 chr1 43516330 43516691 -238676973 - L1MC3 LINE L1 0 7785 7477 1720 157 30 36 chr1 43516702 43517034 -238676630 - MLT1A1 LTR MaLR -35 330 1 2925 148 40 16 chr1 43517034 43517581 -238676083 - L1MC3 LINE L1 -303 7482 6923 255 321 29 66 chr1 43518135 43518272 -238675392 + MIR SINE MIR 22 153 -55 447 288 153 18 chr1 43518323 43518493 -238675171 - MIR SINE MIR -19 243 51 1902 145 3 7 chr1 43518493 43518796 -238674868 - AluJb SINE Alu -10 302 1 921 135 41 6 chr1 43518817 43518987 -238674677 + BC200 scRNA scRNA 1 176 -24 1036 195 19 5 chr1 43518987 43519202 -238674462 - L1MB3 LINE L1 -7 6176 5959 223 266 230 18 chr1 43519230 43519343 -238674321 + MIR SINE MIR 27 163 -99 231 266 0 85 chr1 43520291 43520385 -238673279 + MER5B DNA MER1_type 2 87 -91 485 325 51 69 chr1 43520523 43520898 -238672766 - L2 LINE L2 0 3272 2905 461 284 148 12 chr1 43520907 43521076 -238672588 - MIR SINE MIR -40 222 31 7250 49 5 16 chr1 43521601 43523159 -238670505 - SVA Other Other -799 1385 1 363 106 0 0 chr1 43523159 43523225 -238670439 + (GGGAGA)n Simple_repeat Simple_repeat 2 67 0 386 290 130 30 chr1 43523785 43523954 -238669710 - MER91A DNA MER1_type -10 186 1 553 236 241 6 chr1 43524029 43524203 -238669461 + MIR SINE MIR 29 243 -19 2710 195 24 6 chr1 43524254 43524784 -238668880 - MER74A LTR ERVL 0 558 16 2304 99 3 0 chr1 43524784 43525096 -238668568 + AluSq SINE Alu 1 313 0 2710 195 24 6 chr1 43525096 43525113 -238668551 - MER74A LTR ERVL -542 16 1 252 130 0 0 chr1 43525471 43525517 -238668147 + (TG)n Simple_repeat Simple_repeat 2 47 0 486 203 13 105 chr1 43525604 43525757 -238667907 + MER5B DNA MER1_type 3 141 -37 2278 45 41 7 chr1 43525757 43526047 -238667617 + AluY SINE Alu 1 300 -11 597 207 90 94 chr1 43526074 43526330 -238667334 - MER112 DNA MER1_type -1 255 1 2598 184 41 22 chr1 43526740 43527228 -238666436 - MLT1D LTR MaLR -8 497 1 285 269 135 10 chr1 43527245 43527349 -238666315 + L2 LINE L2 3158 3274 -39 398 277 25 25 chr1 43527390 43527509 -238666155 - MIR SINE MIR -58 150 32 3716 187 29 57 chr1 43527704 43528553 -238665111 + LTR1B LTR ERV1 1 826 0 1494 231 144 44 chr1 43528562 43528598 -238665066 - MLT1H LTR MaLR 0 549 518 2861 153 53 4 chr1 43528598 43528636 -238665028 - MLT2B2 LTR ERVL -1 514 479 350 57 19 0 chr1 43528636 43528689 -238664975 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2861 153 53 4 chr1 43528689 43529139 -238664525 - MLT2B2 LTR ERVL -36 479 2 1494 231 144 44 chr1 43529139 43529601 -238664063 - MLT1H LTR MaLR -31 518 1 529 230 101 7 chr1 43529606 43529754 -238663910 + MIR SINE MIR 86 247 -15 270 261 0 0 chr1 43529788 43529857 -238663807 + (TTA)n Simple_repeat Simple_repeat 1 69 0 2070 145 124 18 chr1 43529967 43530354 -238663310 + MSTA LTR MaLR 1 428 0 4093 154 23 16 chr1 43530354 43531044 -238662620 - MER39 LTR ERV1 -12 695 1 573 329 52 24 chr1 43531144 43531396 -238662268 + MIR SINE MIR 3 261 -1 2299 192 142 57 chr1 43532368 43532419 -238661245 - L1ME1 LINE L1 -5 6161 6116 1997 130 0 3 chr1 43532419 43532720 -238660944 - AluY SINE Alu -11 300 1 2299 192 142 57 chr1 43532720 43533393 -238660271 - L1ME1 LINE L1 -50 6116 5375 1954 242 41 10 chr1 43533761 43534253 -238659411 + MLT1J LTR MaLR 3 509 -2 39046 83 6 13 chr1 43534569 43540768 -238652896 + L1PA6 LINE L1 1 6154 0 845 147 43 18 chr1 43541385 43541548 -238652116 - MIR SINE MIR -29 233 67 223 49 49 24 chr1 43541769 43541810 -238651854 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1835 109 40 0 chr1 43541923 43542198 -238651466 + AluSq SINE Alu 9 294 -19 2101 110 3 7 chr1 43542381 43542682 -238650982 + AluSx SINE Alu 1 300 -12 382 183 29 0 chr1 43542907 43543011 -238650653 + (TTCA)n Simple_repeat Simple_repeat 3 109 0 186 225 38 0 chr1 43543946 43544026 -238649638 + CT-rich Low_complexity Low_complexity 2 84 0 334 307 40 57 chr1 43544313 43544489 -238649175 - L2 LINE L2 -213 3059 2887 327 250 0 0 chr1 43545560 43545624 -238648040 - MIR SINE MIR -1 261 198 399 345 49 0 chr1 43546123 43546349 -238647315 - LTR16A LTR ERVL -75 375 139 219 285 122 65 chr1 43546732 43546855 -238646809 - MIR3 SINE MIR -70 138 9 1476 246 97 14 chr1 43546965 43547396 -238646268 - MLT1C LTR MaLR 0 467 1 588 309 67 32 chr1 43547672 43548047 -238645617 - L2 LINE L2 -1321 1993 1606 199 105 0 79 chr1 43548346 43548384 -238645280 + L2 LINE L2 3279 3313 0 234 0 0 0 chr1 43548581 43548607 -238645057 + (TG)n Simple_repeat Simple_repeat 1 26 0 195 100 0 0 chr1 43548755 43548785 -238644879 + (TG)n Simple_repeat Simple_repeat 1 30 0 649 126 35 161 chr1 43549226 43549327 -238644337 + MER3 DNA MER1_type 34 146 -63 1894 151 0 3 chr1 43549327 43549626 -238644038 - AluJb SINE Alu -14 298 1 649 126 35 161 chr1 43549626 43549644 -238644020 + MER3 DNA MER1_type 146 165 -44 2367 85 3 0 chr1 43549644 43549951 -238643713 - AluSp SINE Alu -5 308 1 649 126 35 161 chr1 43549951 43550029 -238643635 + MER3 DNA MER1_type 165 207 -2 273 180 20 0 chr1 43549989 43550039 -238643625 - MER3 DNA MER1_type -119 90 40 * 262 259 12 25 chr1 43550059 43550140 -238643524 + L2 LINE L2 3193 3272 0 184 316 35 0 chr1 43550523 43550580 -238643084 - L3 LINE CR1 -5 1572 1514 184 311 54 54 chr1 43550648 43550796 -238642868 - L3 LINE CR1 -605 972 825 423 287 0 0 chr1 43550826 43550934 -238642730 + MIR SINE MIR 155 262 0 2291 68 7 3 chr1 43551260 43551555 -238642109 - AluSp SINE Alu -17 296 1 279 273 0 0 chr1 43551939 43552005 -238641659 + L2 LINE L2 3246 3311 -2 * 521 223 128 53 chr1 43551992 43552180 -238641484 + MIR3 SINE MIR 4 205 -3 1523 195 95 24 chr1 43552319 43552689 -238640975 - MSTD LTR MaLR 0 396 1 332 288 8 48 chr1 43553371 43553496 -238640168 + MIR SINE MIR 87 206 -56 827 218 165 4 chr1 43554055 43554303 -238639361 - L2 LINE L2 -1 3312 3025 261 277 134 0 chr1 43556100 43556212 -238637452 + MIR3 SINE MIR 64 190 -18 312 273 52 77 chr1 43556738 43557029 -238636635 + MLT1H LTR MaLR 50 295 -114 291 247 46 30 chr1 43557075 43557187 -238636477 + MLT1E2 LTR MaLR 432 602 -2 1682 106 109 4 chr1 43557188 43557475 -238636189 + AluSx SINE Alu 1 314 0 467 316 36 10 chr1 43558429 43558622 -238635042 + MIR SINE MIR 38 235 -27 259 290 65 0 chr1 43558826 43558919 -238634745 - MIR SINE MIR -116 146 48 1109 237 37 108 chr1 43559175 43559481 -238634183 + HsTC2a DNA Tc2 3 329 -1571 1743 141 23 16 chr1 43559481 43559786 -238633878 + AluJb SINE Alu 1 307 -5 840 147 12 6 chr1 43559795 43559958 -238633706 + L1MA4 LINE L1 6137 6300 0 1109 237 37 108 chr1 43559958 43560096 -238633568 + HsTC2a DNA Tc2 337 425 -319 403 312 65 9 chr1 43560083 43560298 -238633366 + LTR1B LTR ERV1 24 250 -576 * 820 187 163 57 chr1 43560343 43560589 -238633075 + LTR1B LTR ERV1 343 614 -212 280 309 43 32 chr1 43560582 43560770 -238632894 + LTR28 LTR ERV1 831 1020 0 * 751 188 170 59 chr1 43560777 43561065 -238632599 + HsTC2a DNA Tc2 420 739 -3 326 233 132 57 chr1 43561263 43561437 -238632227 - MER20B DNA MER1_type -28 191 1 477 210 20 0 chr1 43562380 43562480 -238631184 + MIR SINE MIR 48 149 -113 747 229 145 92 chr1 43562775 43563123 -238630541 - MLT1H1 LTR MaLR 0 555 167 333 0 0 0 chr1 43563123 43563160 -238630504 + (CA)n Simple_repeat Simple_repeat 1 37 0 747 229 145 92 chr1 43563160 43563315 -238630349 - MLT1H1 LTR MaLR -388 167 22 219 88 0 0 chr1 43563762 43563796 -238629868 + (TCTCTG)n Simple_repeat Simple_repeat 3 36 0 213 338 0 0 chr1 43564436 43564507 -238629157 + L3 LINE CR1 1408 1478 -99 2431 88 0 3 chr1 43565373 43565681 -238627983 + AluSg SINE Alu 1 307 -3 219 348 0 0 chr1 43565794 43565883 -238627781 + (CA)n Simple_repeat Simple_repeat 2 90 0 788 234 10 10 chr1 43565986 43566178 -238627486 + MIR SINE MIR 51 242 -20 214 333 43 51 chr1 43566198 43566336 -238627328 + MIR3 SINE MIR 3 139 -69 424 258 187 19 chr1 43566857 43567246 -238626418 + L2 LINE L2 2682 3140 -173 800 99 41 0 chr1 43567277 43567398 -238626266 - L1MA4A LINE L1 -4 6299 6174 2020 101 0 0 chr1 43567424 43567682 -238625982 + AluSq SINE Alu 44 301 -12 184 232 0 71 chr1 43567749 43567805 -238625859 + L2 LINE L2 3262 3313 0 198 0 0 0 chr1 43567924 43567946 -238625718 + (A)n Simple_repeat Simple_repeat 1 22 0 385 325 53 14 chr1 43568727 43568873 -238624791 + MIR3 SINE MIR 1 145 -63 640 243 127 111 chr1 43569445 43570109 -238623555 + L1ME4a LINE L1 5283 5956 -165 1079 274 66 23 chr1 43570519 43571025 -238622639 - L2 LINE L2 0 3313 2776 345 273 35 21 chr1 43571026 43571043 -238622621 - L1MA10 LINE L1 0 6334 6318 1891 212 91 6 chr1 43571043 43571699 -238621965 - L1ME2 LINE L1 -6 6160 5422 674 247 30 0 chr1 43571700 43571866 -238621798 + MIR SINE MIR 78 248 -14 2338 100 7 3 chr1 43572151 43572460 -238621204 + AluSg SINE Alu 1 310 0 226 229 0 49 chr1 43573401 43573462 -238620202 + MIR SINE MIR 183 240 -22 338 296 144 7 chr1 43573478 43573633 -238620031 - MIR SINE MIR -62 146 19 1372 114 68 14 chr1 43573653 43573873 -238619791 - AluSg/x SINE Alu 0 312 81 293 321 105 24 chr1 43573886 43574095 -238619569 - L3 LINE CR1 -123 1454 1229 230 224 0 0 chr1 43574121 43574170 -238619494 - MIR SINE MIR -162 100 52 1400 239 68 25 chr1 43574174 43574594 -238619070 - MLT1C LTR MaLR 0 467 19 2112 95 0 86 chr1 43575287 43575614 -238618050 + AluY SINE Alu 2 300 -11 732 263 112 21 chr1 43575855 43576185 -238617479 + LTR33 LTR ERVL 1 360 -161 1004 217 52 63 chr1 43576185 43576535 -238617129 + MLT1C LTR MaLR 1 462 -5 29 47 0 0 chr1 43576930 43576973 -238616691 + AT_rich Low_complexity Low_complexity 1 43 0 204 245 0 0 chr1 43576995 43577048 -238616616 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 773 297 99 30 chr1 43577338 43578522 -238615142 + L1M4 LINE L1 3075 4339 -1807 314 292 75 19 chr1 43578652 43578813 -238614851 + L1M4 LINE L1 4312 4481 -1665 852 144 0 8 chr1 43578971 43579103 -238614561 - FLAM_C SINE Alu -2 131 1 267 303 125 26 chr1 43579250 43579402 -238614262 - L1ME3A LINE L1 -271 5899 5733 1917 151 3 0 chr1 43582173 43582480 -238611184 - AluJb SINE Alu 0 308 1 22 25 0 25 chr1 43582948 43582968 -238610696 + AT_rich Low_complexity Low_complexity 1 20 -19 2764 23 0 3 chr1 43582968 43583276 -238610388 - AluY SINE Alu -4 307 1 22 25 0 25 chr1 43583276 43583295 -238610369 + AT_rich Low_complexity Low_complexity 20 39 0 223 70 23 23 chr1 43583302 43583345 -238610319 + (TA)n Simple_repeat Simple_repeat 1 43 0 708 206 15 0 chr1 43583347 43583478 -238610186 - AluJb SINE Alu -178 134 2 2806 183 49 87 chr1 43583505 43583533 -238610131 - L1M4 LINE L1 -1031 5115 5087 2365 89 3 13 chr1 43583533 43583837 -238609827 - AluSg SINE Alu -9 301 1 2806 183 49 87 chr1 43583837 43584586 -238609078 - L1M4 LINE L1 -1059 5087 4378 2414 85 0 0 chr1 43584586 43584881 -238608783 + AluSq SINE Alu 1 295 -18 2806 183 49 87 chr1 43584881 43585043 -238608621 - L1M4 LINE L1 -1768 4378 4211 1545 192 35 66 chr1 43585043 43585174 -238608490 - L1MEc LINE L1 -3219 2996 2862 1452 136 35 119 chr1 43585174 43585306 -238608358 + AluYb8 SINE Alu 1 143 -175 2332 112 0 6 chr1 43585306 43585618 -238608046 + AluSg SINE Alu 1 310 0 1452 136 35 119 chr1 43585618 43585830 -238607834 + AluYb8 SINE Alu 143 316 -2 1545 192 35 66 chr1 43585830 43586152 -238607512 - L1MEc LINE L1 -3353 2862 2557 279 0 0 0 chr1 43586153 43586184 -238607480 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2222 89 18 0 chr1 43586186 43586467 -238607197 - AluSx SINE Alu -22 290 5 180 0 0 0 chr1 43586467 43586487 -238607177 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 327 192 214 155 chr1 43586518 43586534 -238607130 - L1MEc LINE L1 -5554 842 828 2163 135 3 0 chr1 43586534 43586845 -238606819 - AluSx SINE Alu 0 312 1 327 192 214 155 chr1 43586845 43586942 -238606722 - L1MEc LINE L1 -5568 828 738 2096 131 0 0 chr1 43586942 43587260 -238606404 - AluSx SINE Alu 0 318 1 327 192 214 155 chr1 43587260 43587271 -238606393 - L1MEc LINE L1 -5658 738 729 2130 130 0 34 chr1 43587271 43587390 -238606274 - AluSx SINE Alu -1 311 189 2078 132 7 3 chr1 43587390 43587686 -238605978 - AluSx SINE Alu -15 297 1 2130 130 0 34 chr1 43587686 43587888 -238605776 - AluSx SINE Alu -123 189 1 327 192 214 155 chr1 43587888 43588031 -238605633 - L1MEc LINE L1 -5667 729 556 980 278 129 21 chr1 43589157 43589592 -238604072 - L1MEc LINE L1 -5869 527 46 1069 163 0 0 chr1 43589713 43589873 -238603791 - AluSc SINE Alu -18 291 132 2348 88 0 10 chr1 43589873 43590179 -238603485 - AluSq SINE Alu -10 303 1 1403 173 14 42 chr1 43590320 43590603 -238603061 - AluJo SINE Alu -37 275 1 2576 57 0 0 chr1 43590628 43590924 -238602740 + AluY SINE Alu 1 296 -15 252 242 15 0 chr1 43591324 43591390 -238602274 + MER117 DNA MER1_type 56 122 -75 622 51 13 0 chr1 43591454 43591533 -238602131 - MADE1 DNA Mariner 0 80 1 550 256 25 12 chr1 43591548 43591708 -238601956 - MIR SINE MIR -27 235 74 1981 162 3 0 chr1 43592198 43592506 -238601158 - AluJb SINE Alu -3 309 1 21 0 0 0 chr1 43592670 43592691 -238600973 + AT_rich Low_complexity Low_complexity 1 21 0 498 69 14 0 chr1 43592691 43592763 -238600901 - MER41A LTR ERV1 -86 468 396 387 317 91 15 chr1 43592824 43593023 -238600641 - L1MC4a LINE L1 -1906 5902 5689 2473 94 0 0 chr1 43593023 43593330 -238600334 + AluSc SINE Alu 1 307 -2 2353 79 0 0 chr1 43593407 43593713 -238599951 + AluSc SINE Alu 1 306 0 373 192 27 0 chr1 43593889 43593962 -238599702 - MER112 DNA MER1_type -185 75 1 350 102 0 85 chr1 43594262 43594321 -238599343 + AluJ/FRAM SINE Alu 228 277 -25 186 43 0 0 chr1 43594543 43594566 -238599098 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 21 0 0 0 chr1 43594631 43594652 -238599012 + AT_rich Low_complexity Low_complexity 1 21 0 2078 160 45 60 chr1 43594939 43595407 -238598257 - MER65C LTR ERV1 0 461 1 2196 113 27 0 chr1 43596786 43597087 -238596577 - AluSx SINE Alu -3 309 1 1199 171 43 5 chr1 43597156 43597367 -238596297 + AluJb SINE Alu 77 295 -17 2050 105 60 0 chr1 43597754 43598039 -238595625 + AluY SINE Alu 1 302 -9 995 256 22 18 chr1 43598552 43598678 -238594986 + L2 LINE L2 2589 2713 -601 2059 120 0 30 chr1 43598678 43598979 -238594685 + AluSx SINE Alu 7 298 -14 995 256 22 18 chr1 43598979 43599129 -238594535 + L2 LINE L2 2713 2866 -448 245 77 26 0 chr1 43599134 43599173 -238594491 - MER5A DNA MER1_type -27 162 123 634 216 7 14 chr1 43599272 43599411 -238594253 - MER5A DNA MER1_type -51 138 1 * 1079 272 62 43 chr1 43599411 43599845 -238593819 + L2 LINE L2 2872 3313 0 480 169 73 8 chr1 43599843 43599967 -238593697 + MIR SINE MIR 131 262 0 * 2353 89 7 0 chr1 43600351 43600643 -238593021 + AluSg SINE Alu 1 294 -16 1110 167 0 6 chr1 43600691 43600865 -238592799 + AluJb SINE Alu 134 306 -6 2302 76 0 14 chr1 43601819 43602108 -238591556 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr1 43602108 43602131 -238591533 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1807 162 64 6 chr1 43603662 43603989 -238589675 + MER7A DNA MER2_type 2 345 -1 296 192 26 51 chr1 43603996 43604074 -238589590 + MER5B DNA MER1_type 102 177 -1 360 287 70 0 chr1 43604501 43604630 -238589034 - L1ME LINE L1 -590 5531 5394 2386 85 7 3 chr1 43604753 43605047 -238588617 + AluSq SINE Alu 1 295 -18 264 224 0 30 chr1 43605262 43605329 -238588335 + MIR SINE MIR 74 138 -70 462 252 9 0 chr1 43605356 43605471 -238588193 + L2 LINE L2 3198 3313 0 3455 143 48 51 chr1 43605803 43605964 -238587700 + MER39 LTR ERV1 1 161 -546 1658 144 92 24 chr1 43605964 43606256 -238587408 + AluJb SINE Alu 1 312 0 3455 143 48 51 chr1 43606256 43606676 -238586988 + MER39 LTR ERV1 161 582 -125 2344 94 3 7 chr1 43606676 43606984 -238586680 - AluSq SINE Alu -6 307 1 3455 143 48 51 chr1 43606984 43607046 -238586618 + MER39 LTR ERV1 582 643 -64 262 210 86 0 chr1 43607079 43607160 -238586504 + MER34 LTR ERV1 455 542 0 1064 274 102 18 chr1 43607940 43608323 -238585341 - MLT1J2 LTR MaLR 0 450 36 495 250 78 29 chr1 43608481 43608685 -238584979 + MIR SINE MIR 31 244 -18 2363 95 0 0 chr1 43610000 43610296 -238583368 + AluSg SINE Alu 1 296 -14 474 222 183 40 chr1 43610345 43610723 -238582941 + L1ME4a LINE L1 5690 6121 0 922 206 29 5 chr1 43611114 43611318 -238582346 + MER3 DNA MER1_type 1 209 0 602 56 9 28 chr1 43611797 43611904 -238581760 + (TA)n Simple_repeat Simple_repeat 1 105 0 261 128 0 0 chr1 43711978 43712025 -238481639 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2044 147 0 0 chr1 43712024 43712336 -238481328 + AluSx SINE Alu 1 312 0 6216 140 14 33 chr1 43712342 43712802 -238480862 + L1PB1 LINE L1 4358 4825 -1326 2075 102 0 3 chr1 43712802 43713124 -238480540 + AluSx SINE Alu 1 321 0 6216 140 14 33 chr1 43713124 43713814 -238479850 + L1PB1 LINE L1 4825 5526 -625 2133 62 7 7 chr1 43713814 43714151 -238479513 + AluY SINE Alu 1 311 0 2030 128 0 3 chr1 43714151 43714455 -238479209 + AluSx SINE Alu 4 306 -6 6216 140 14 33 chr1 43714455 43714749 -238478915 + L1PB1 LINE L1 5525 5823 -328 2185 83 0 13 chr1 43714749 43715050 -238478614 + AluSg SINE Alu 3 299 -11 6216 140 14 33 chr1 43715050 43715425 -238478239 + L1PB1 LINE L1 5823 6145 -6 2261 78 3 10 chr1 43717115 43717424 -238476240 - AluSg1 SINE Alu -2 307 1 198 204 0 45 chr1 43717598 43717642 -238476022 + L2 LINE L2 3140 3181 -91 354 287 184 11 chr1 43717953 43718214 -238475450 + LTR52 LTR ERVL 16 321 -100 2158 97 3 0 chr1 43718220 43718519 -238475145 - AluSc SINE Alu -9 300 1 923 103 0 0 chr1 43718538 43718664 -238475000 - AluSq/x SINE Alu -187 126 1 240 193 171 11 chr1 43718669 43718757 -238474907 + LTR52 LTR ERVL 319 420 -1 1985 90 30 33 chr1 43719085 43719386 -238474278 + AluSq SINE Alu 1 300 -13 589 180 20 0 chr1 43719431 43719531 -238474133 - FRAM SINE Alu -16 160 59 2302 76 3 0 chr1 43719783 43720074 -238473590 - AluSp SINE Alu -21 292 1 2452 56 0 3 chr1 43720448 43720753 -238472911 - AluY SINE Alu -7 304 1 2418 55 10 10 chr1 43721263 43721572 -238472092 + AluY SINE Alu 1 309 -2 571 203 128 8 chr1 43721666 43721799 -238471865 + FRAM SINE Alu 17 165 -11 2231 84 0 23 chr1 43721834 43722143 -238471521 + AluSq SINE Alu 1 302 -11 1460 166 58 22 chr1 43722161 43722439 -238471225 - AluJb SINE Alu -24 288 1 2154 118 0 3 chr1 43722754 43723067 -238470597 + AluSx SINE Alu 1 312 0 2080 91 14 10 chr1 43723248 43723544 -238470120 - AluSq SINE Alu -16 297 1 1774 139 24 3 chr1 43724475 43724763 -238468901 + AluSg SINE Alu 5 298 -12 2101 117 10 0 chr1 43724891 43725191 -238468473 + AluSq SINE Alu 1 303 -10 2201 103 3 0 chr1 43725751 43726052 -238467612 - AluSp SINE Alu -11 302 1 630 207 81 46 chr1 43726090 43726264 -238467400 - MER58A DNA MER1_type 0 224 45 339 296 44 49 chr1 43726515 43726762 -238466902 - MIR SINE MIR -8 254 10 1880 99 18 7 chr1 43726816 43727098 -238466566 - AluSq SINE Alu -18 295 11 2217 83 3 7 chr1 43728711 43729011 -238464653 - AluSq SINE Alu -14 299 1 220 184 0 0 chr1 43729614 43729652 -238464012 + (CA)n Simple_repeat Simple_repeat 2 39 0 755 244 52 33 chr1 43730295 43730516 -238463148 + MIR SINE MIR 15 231 -31 2361 70 0 0 chr1 43731288 43731586 -238462078 - AluY SINE Alu -13 298 1 344 225 0 0 chr1 43731606 43731677 -238461987 - MER103 DNA DNA -75 91 21 425 226 23 53 chr1 43732331 43732464 -238461200 + FLAM_C SINE Alu 3 131 -2 1857 103 82 7 chr1 43732469 43732751 -238460913 + AluSp SINE Alu 1 303 -10 1954 121 34 0 chr1 43733088 43733386 -238460278 + AluSp SINE Alu 1 308 -5 1984 108 9 19 chr1 43733386 43733702 -238459962 + AluSp SINE Alu 1 313 0 1966 114 23 13 chr1 43733852 43734189 -238459475 + AluSx SINE Alu 1 340 0 201 325 96 75 chr1 43734434 43734545 -238459119 + L3 LINE CR1 1230 1337 -240 862 233 5 9 chr1 43734545 43734755 -238458909 - L1MB5 LINE L1 -9 6165 5957 201 325 96 75 chr1 43734755 43734975 -238458689 + L3 LINE CR1 1337 1568 -9 796 161 37 101 chr1 43735020 43735148 -238458516 + MER3 DNA MER1_type 6 116 -93 1607 113 121 15 chr1 43735148 43735413 -238458251 - AluSg SINE Alu -17 293 1 796 161 37 101 chr1 43735413 43735502 -238458162 + MER3 DNA MER1_type 116 209 0 210 262 12 36 chr1 43735841 43735925 -238457739 + MER5C DNA MER1_type 131 212 -112 543 156 62 0 chr1 43736400 43736496 -238457168 + FLAM_A SINE Alu 23 124 -18 251 200 191 57 chr1 43736944 43737049 -238456615 + MIR SINE MIR 57 175 -87 2007 125 0 10 chr1 43737206 43737518 -238456146 + AluSc SINE Alu 1 309 0 697 111 137 0 chr1 43737532 43737649 -238456015 + FLAM_C SINE Alu 1 133 0 1873 88 38 0 chr1 43737659 43737922 -238455742 + AluSx SINE Alu 11 283 -29 2019 128 0 0 chr1 43738485 43738783 -238454881 - AluSq SINE Alu -15 298 1 2218 86 0 16 chr1 43739301 43739615 -238454049 + AluSg SINE Alu 1 309 -1 2107 103 0 0 chr1 43739621 43739912 -238453752 + AluSx SINE Alu 9 299 -13 2199 83 0 43 chr1 43739915 43740239 -238453425 + AluY SINE Alu 1 310 -1 245 322 0 46 chr1 43740266 43740353 -238453311 + MIR3 SINE MIR 3 85 -123 1720 148 14 7 chr1 43740376 43740660 -238453004 - AluJb SINE Alu -26 286 1 778 126 27 0 chr1 43740686 43740797 -238452867 - FLAM_C SINE Alu -15 118 5 1663 173 11 0 chr1 43740812 43741095 -238452569 - AluJo SINE Alu -25 287 2 355 239 142 18 chr1 43741098 43741211 -238452453 + MIR3 SINE MIR 71 197 -11 574 263 11 46 chr1 43741296 43741401 -238452263 - MIR SINE MIR -37 225 127 1843 100 4 21 chr1 43741401 43741682 -238451982 + AluSq SINE Alu 36 311 -2 574 263 11 46 chr1 43741682 43741751 -238451913 - MIR SINE MIR -135 127 57 1822 98 0 4 chr1 43741857 43742111 -238451553 - AluSq SINE Alu -52 261 9 1864 108 19 46 chr1 43742743 43742880 -238450784 + AluSx SINE Alu 1 140 -172 2208 121 0 0 chr1 43742880 43743193 -238450471 + AluSq SINE Alu 1 313 0 1864 108 19 46 chr1 43743193 43743362 -238450302 + AluSx SINE Alu 140 299 -13 790 150 150 62 chr1 43743568 43743761 -238449903 - MER46A DNA MER2_type 0 236 27 2173 95 3 10 chr1 43743777 43744082 -238449582 - AluSp SINE Alu -10 303 1 825 146 0 0 chr1 43744091 43744214 -238449450 - FLAM_C SINE Alu -20 123 1 1130 133 22 49 chr1 43744218 43744444 -238449220 - AluSq SINE Alu -9 304 85 810 105 128 8 chr1 43744470 43744603 -238449061 - AluSc SINE Alu -159 150 2 1276 103 0 16 chr1 43745383 43745567 -238448097 - AluSx SINE Alu -131 181 1 2256 100 3 6 chr1 43745597 43745908 -238447756 + AluSx SINE Alu 1 310 -2 225 0 0 0 chr1 43745952 43745977 -238447687 + (A)n Simple_repeat Simple_repeat 1 25 0 938 113 33 13 chr1 43745984 43746135 -238447529 + FRAM SINE Alu 8 161 -15 2060 83 0 10 chr1 43746349 43746639 -238447025 + AluSp SINE Alu 5 291 -22 182 320 173 15 chr1 43746884 43747081 -238446583 - L2 LINE L2 -339 2975 2748 1691 149 3 21 chr1 43747486 43747774 -238445890 + AluJb SINE Alu 1 283 -29 200 185 19 0 chr1 43747778 43747832 -238445832 + GA-rich Low_complexity Low_complexity 1 55 0 639 261 41 98 chr1 43748001 43748062 -238445602 + MIR SINE MIR 12 75 -187 2251 84 0 6 chr1 43748062 43748373 -238445291 + AluSc SINE Alu 1 309 0 639 261 41 98 chr1 43748373 43748556 -238445108 + MIR SINE MIR 75 242 -20 516 16 0 0 chr1 43748758 43748819 -238444845 + (TA)n Simple_repeat Simple_repeat 2 62 0 828 179 12 25 chr1 43748827 43748989 -238444675 - AluJb SINE Alu -26 286 127 1609 143 10 47 chr1 43749000 43749154 -238444510 - AluJo SINE Alu -22 290 151 2231 98 0 13 chr1 43749154 43749459 -238444205 - AluSc SINE Alu -8 301 1 1609 143 10 47 chr1 43749459 43749605 -238444059 - AluJo SINE Alu -161 151 1 294 143 41 0 chr1 43749625 43749674 -238443990 - LTR43 LTR ERV1 -147 455 405 * 5236 105 33 29 chr1 43749666 43749746 -238443918 - HSMAR2 DNA Mariner -173 1129 1051 2187 106 0 3 chr1 43749746 43750049 -238443615 + AluSq SINE Alu 1 302 -11 5236 105 33 29 chr1 43750049 43750751 -238442913 - HSMAR2 DNA Mariner -251 1051 341 2096 121 0 3 chr1 43750751 43751056 -238442608 - AluSx SINE Alu -8 304 1 5236 105 33 29 chr1 43751056 43751069 -238442595 - HSMAR2 DNA Mariner -961 341 330 1542 71 0 5 chr1 43751143 43751341 -238442323 + AluSq SINE Alu 1 197 -116 2071 142 0 0 chr1 43751994 43752303 -238441361 - AluSx SINE Alu -3 309 1 2110 124 10 0 chr1 43752505 43752812 -238440852 - AluSg SINE Alu 0 310 1 863 159 6 0 chr1 43752812 43752969 -238440695 - AluJb SINE Alu -11 301 144 1949 98 11 0 chr1 43753139 43753403 -238440261 - AluSg SINE Alu -25 285 19 2036 120 0 40 chr1 43753433 43753757 -238439907 - AluSx SINE Alu -1 311 1 1496 175 30 0 chr1 43753778 43754046 -238439618 - AluJb SINE Alu -24 288 13 1618 147 31 27 chr1 43754072 43754364 -238439300 - AluSx SINE Alu -19 293 1 1971 141 0 0 chr1 43754388 43754687 -238438977 + AluSq SINE Alu 1 299 -14 1751 149 36 0 chr1 43754715 43754996 -238438668 + AluJb SINE Alu 3 293 -19 796 189 44 132 chr1 43754996 43755235 -238438429 + L1ME LINE L1 4649 4847 -1299 1805 113 85 0 chr1 43755235 43755518 -238438146 - AluSx SINE Alu 0 312 6 796 189 44 132 chr1 43755518 43755643 -238438021 + L1ME LINE L1 4847 4981 -1165 682 254 74 47 chr1 43755710 43755947 -238437717 + L1ME LINE L1 531 760 -5310 2050 122 7 0 chr1 43755947 43756241 -238437423 + AluSx SINE Alu 1 296 -16 682 254 74 47 chr1 43756241 43756392 -238437272 + L1ME LINE L1 760 905 -5165 2558 49 0 0 chr1 43756392 43756699 -238436965 + AluY SINE Alu 1 307 -4 2309 88 7 0 chr1 43756706 43757012 -238436652 + AluSx SINE Alu 1 308 -4 682 254 74 47 chr1 43757012 43757087 -238436577 + L1ME LINE L1 910 1016 -5054 715 248 20 47 chr1 43757174 43757422 -238436242 + L1ME2 LINE L1 5866 6119 -47 1998 129 3 0 chr1 43757422 43757724 -238435940 - AluSp SINE Alu -10 303 1 715 248 20 47 chr1 43757724 43757741 -238435923 + L1ME2 LINE L1 6119 6135 -31 1774 149 14 3 chr1 43757897 43758192 -238435472 + AluSx SINE Alu 1 298 -14 1945 193 28 65 chr1 43758193 43758367 -238435297 + L1ME LINE L1 5163 5342 -822 1973 108 7 20 chr1 43758367 43758662 -238435002 - AluSp SINE Alu -22 291 1 1945 193 28 65 chr1 43758662 43759074 -238434590 + L1ME LINE L1 5342 5723 -441 2009 122 3 0 chr1 43759097 43759384 -238434280 - AluSx SINE Alu -24 288 1 1471 121 67 40 chr1 43759390 43759566 -238434098 - L1MA8 LINE L1 0 6291 6102 2268 94 0 3 chr1 43759566 43759865 -238433799 + AluSx SINE Alu 1 298 -14 1471 121 67 40 chr1 43759865 43759986 -238433678 - L1MA8 LINE L1 -189 6102 5986 644 124 0 0 chr1 43760379 43760476 -238433188 + AluJ/FRAM SINE Alu 216 312 0 2134 115 0 6 chr1 43760552 43760864 -238432800 - AluSq SINE Alu -3 310 1 457 158 17 45 chr1 43761044 43761194 -238432470 + GA-rich Low_complexity Low_complexity 1 147 -25 1732 118 15 0 chr1 43761194 43761457 -238432207 + AluSg SINE Alu 39 305 -5 457 158 17 45 chr1 43761457 43761483 -238432181 + GA-rich Low_complexity Low_complexity 147 172 0 554 194 0 0 chr1 43761483 43761586 -238432078 - AluSg/x SINE Alu -10 302 200 318 115 31 52 chr1 43761586 43761630 -238432034 + GA-rich Low_complexity Low_complexity 6 49 -50 1794 102 128 0 chr1 43761630 43761896 -238431768 + AluSg SINE Alu 1 300 0 318 115 31 52 chr1 43761896 43761947 -238431717 + GA-rich Low_complexity Low_complexity 49 99 0 1338 104 6 0 chr1 43762047 43762229 -238431435 - AluSc SINE Alu -126 183 1 709 91 0 0 chr1 43762232 43762320 -238431344 - AluSq/x SINE Alu -178 134 47 1118 128 34 6 chr1 43762320 43762499 -238431165 - AluSx SINE Alu -128 184 1 247 387 0 35 chr1 43762499 43762537 -238431127 + MIR SINE MIR 112 150 -112 2273 88 0 7 chr1 43762537 43762845 -238430819 - AluSc SINE Alu -3 306 1 247 387 0 35 chr1 43762845 43762948 -238430716 + MIR SINE MIR 150 248 -14 1063 151 170 54 chr1 43764350 43764480 -238429184 - AluJb SINE Alu -13 289 175 2290 47 0 10 chr1 43764480 43764779 -238428885 - AluY SINE Alu -15 296 1 1063 151 170 54 chr1 43764779 43764907 -238428757 - AluJb SINE Alu -127 175 1 1535 193 29 52 chr1 43764953 43765240 -238428424 + L1MDa LINE L1 15 307 -6233 1336 170 101 11 chr1 43765240 43765392 -238428272 - AluJb SINE Alu -10 302 165 2137 86 3 20 chr1 43765392 43765695 -238427969 - AluSq SINE Alu -15 298 1 191 59 0 29 chr1 43765702 43765736 -238427928 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1336 170 101 11 chr1 43765736 43765851 -238427813 - AluJb SINE Alu -152 160 2 1535 193 29 52 chr1 43765851 43765911 -238427753 + L1MDa LINE L1 307 354 -6186 816 93 0 86 chr1 43765913 43766064 -238427600 - AluSx SINE Alu 0 310 173 465 167 0 0 chr1 43766066 43766138 -238427526 - AluSx SINE Alu -240 73 2 6366 187 91 42 chr1 43766139 43766589 -238427075 + L1MDa LINE L1 342 769 -5771 1636 161 10 28 chr1 43766589 43766880 -238426784 + AluJo SINE Alu 1 286 -26 6366 187 91 42 chr1 43766880 43767541 -238426123 + L1MDa LINE L1 769 1396 -5144 2176 108 0 7 chr1 43767541 43767846 -238425818 - AluSx SINE Alu -9 303 1 6366 187 91 42 chr1 43767846 43767963 -238425701 + L1MDa LINE L1 1396 1506 -5034 2063 93 7 7 chr1 43767963 43768253 -238425411 - AluSg SINE Alu -20 290 1 6366 187 91 42 chr1 43768253 43768704 -238424960 + L1MDa LINE L1 1506 2294 -4246 288 152 0 0 chr1 43768719 43768765 -238424899 + L1MDa LINE L1 2258 2303 -4237 498 169 11 0 chr1 43768765 43768854 -238424810 + AluJ/FRAM SINE Alu 223 312 0 1092 66 0 0 chr1 43768925 43769061 -238424603 + AluSq/x SINE Alu 1 136 -176 1946 117 9 19 chr1 43769061 43769377 -238424287 + AluSq SINE Alu 1 313 0 2147 222 45 50 chr1 43769433 43770048 -238423616 + L1MDa LINE L1 2991 3608 -2932 1726 151 28 0 chr1 43770048 43770332 -238423332 - AluJb SINE Alu -12 300 9 2147 222 45 50 chr1 43770332 43770385 -238423279 + L1MDa LINE L1 3608 3660 -2880 1807 151 7 20 chr1 43770385 43770684 -238422980 + AluSx SINE Alu 1 295 -17 816 132 0 8 chr1 43770688 43770809 -238422855 - FLAM_C SINE Alu -9 124 5 2147 222 45 50 chr1 43770809 43770896 -238422768 + L1MDa LINE L1 3663 3748 -2792 1974 112 11 0 chr1 43770915 43771202 -238422462 - AluSg SINE Alu -20 290 1 4520 211 70 68 chr1 43771231 43771626 -238422038 + L1MDa LINE L1 3756 4149 -2391 1836 96 0 11 chr1 43771626 43771887 -238421777 + AluSx SINE Alu 1 258 -54 4520 211 70 68 chr1 43771887 43771898 -238421766 + L1MDa LINE L1 4149 4158 -2382 252 0 0 0 chr1 43771898 43771926 -238421738 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2179 80 0 48 chr1 43771934 43772068 -238421596 + AluSp SINE Alu 1 140 -173 2206 103 0 0 chr1 43772068 43772370 -238421294 + AluSg SINE Alu 1 302 -8 2179 80 0 48 chr1 43772370 43772547 -238421117 + AluSp SINE Alu 140 297 -16 4520 211 70 68 chr1 43772547 43773457 -238420207 + L1MDa LINE L1 4164 5071 -1469 1720 148 6 60 chr1 43773457 43773626 -238420038 - AluJo SINE Alu -10 302 156 2153 86 3 7 chr1 43773626 43773927 -238419737 - AluY SINE Alu -11 300 1 1720 148 6 60 chr1 43773927 43774075 -238419589 - AluJo SINE Alu -156 156 2 4520 211 70 68 chr1 43774075 43774100 -238419564 + L1MDa LINE L1 5071 5094 -1446 1456 159 151 0 chr1 43774100 43774351 -238419313 - AluJo SINE Alu -13 289 1 4520 211 70 68 chr1 43774351 43774378 -238419286 + L1MDa LINE L1 5094 5119 -1421 2021 104 16 32 chr1 43774378 43774686 -238418978 + AluSq SINE Alu 1 303 -10 2267 90 0 0 chr1 43774686 43774985 -238418679 + AluSg SINE Alu 1 299 -11 4520 211 70 68 chr1 43774985 43775184 -238418480 + L1MDa LINE L1 5118 5340 -1200 2150 90 7 0 chr1 43775311 43775600 -238418064 + AluY SINE Alu 3 293 -18 810 171 35 65 chr1 43775606 43775776 -238417888 + MLT2D LTR ERVL 188 352 -62 1365 173 0 9 chr1 43775807 43776033 -238417631 + AluSx SINE Alu 1 224 -88 1534 184 16 75 chr1 43776089 43776447 -238417217 + L1MDa LINE L1 5336 5714 -905 2064 129 0 0 chr1 43776447 43776750 -238416914 + AluSx SINE Alu 1 303 -9 1870 90 32 22 chr1 43776750 43777063 -238416601 + AluY SINE Alu 1 316 0 1534 184 16 75 chr1 43777063 43777266 -238416398 + L1MDa LINE L1 5712 5874 -745 1282 122 0 16 chr1 43777270 43777459 -238416205 + AluSx SINE Alu 1 186 -126 24 32 0 0 chr1 43777978 43778009 -238415655 + GC_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 43778075 43778099 -238415565 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 43778229 43778250 -238415414 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 43778330 43778351 -238415313 + GC_rich Low_complexity Low_complexity 1 21 0 532 146 0 27 chr1 43779109 43779219 -238414445 + (GGGGA)n Simple_repeat Simple_repeat 5 111 0 458 46 15 0 chr1 43779209 43779274 -238414390 + (GA)n Simple_repeat Simple_repeat 1 66 0 * 463 152 0 0 chr1 43779327 43779393 -238414271 + FLAM SINE Alu 60 125 -18 2442 252 87 20 chr1 43779399 43780212 -238413452 + HAL1 LINE L1 1541 2421 -86 1594 177 0 10 chr1 43780212 43780506 -238413158 + AluJo SINE Alu 3 293 -19 2442 252 87 20 chr1 43780506 43780589 -238413075 + HAL1 LINE L1 2421 2497 -10 1136 99 12 0 chr1 43780690 43780852 -238412812 + AluSc SINE Alu 135 298 -11 189 0 0 0 chr1 43780873 43780894 -238412770 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 441 0 0 0 chr1 43780893 43780942 -238412722 + (GA)n Simple_repeat Simple_repeat 2 50 0 960 171 24 18 chr1 43781598 43781768 -238411896 - FAM SINE Alu -4 171 1 2321 77 0 3 chr1 43781793 43782103 -238411561 - AluY SINE Alu -1 310 2 4881 175 36 59 chr1 43783729 43784941 -238408723 - L1MB7 LINE L1 0 6184 5035 2211 103 0 0 chr1 43784941 43785241 -238408423 - AluSg SINE Alu -10 300 1 4881 175 36 59 chr1 43785241 43785748 -238407916 - L1MB7 LINE L1 -1149 5035 4518 1752 151 3 7 chr1 43785904 43786196 -238407468 + AluSx SINE Alu 1 291 -21 2014 120 0 0 chr1 43786495 43786778 -238406886 - AluSx SINE Alu -29 283 1 2195 103 0 13 chr1 43787076 43787378 -238406286 - AluSx SINE Alu -13 299 2 837 191 71 37 chr1 43787496 43787723 -238405941 - MIR SINE MIR -17 245 16 682 10 0 62 chr1 43788831 43788927 -238404737 + L1PA8 LINE L1 6083 6172 0 1951 94 49 0 chr1 43789690 43789978 -238403686 + AluSp SINE Alu 1 302 -11 290 316 29 44 chr1 43790245 43790381 -238403283 + MIR3 SINE MIR 4 137 -71 1939 113 0 45 chr1 43790819 43790984 -238402680 - AluSx SINE Alu -15 297 151 2318 64 0 42 chr1 43790984 43791296 -238402368 - AluY SINE Alu -12 299 1 1939 113 0 45 chr1 43791296 43791440 -238402224 - AluSx SINE Alu -161 151 2 813 213 43 47 chr1 43792718 43792929 -238400735 - MIR SINE MIR -10 252 43 2095 111 7 3 chr1 43793744 43794050 -238399614 - AluSc SINE Alu -2 307 1 303 104 62 0 chr1 43794719 43794767 -238398897 + L2 LINE L2 3263 3313 0 1379 192 51 88 chr1 43795065 43795185 -238398479 + L1MB5 LINE L1 5693 5816 -358 2273 62 3 3 chr1 43795185 43795477 -238398187 + AluY SINE Alu 1 292 -19 1379 192 51 88 chr1 43795477 43795848 -238397816 + L1MB5 LINE L1 5816 6166 -8 315 49 0 0 chr1 43795870 43795911 -238397753 + (CA)n Simple_repeat Simple_repeat 2 42 0 392 283 62 18 chr1 43796360 43796473 -238397191 + L2 LINE L2 3192 3309 -4 410 244 150 8 chr1 43796600 43796727 -238396937 + L2 LINE L2 3169 3313 0 234 286 67 34 chr1 43796896 43797015 -238396649 - L2 LINE L2 -203 3069 2947 2345 63 0 28 chr1 43797030 43797349 -238396315 + AluY SINE Alu 1 310 -1 1613 162 3 32 chr1 43797489 43797797 -238395867 - AluJo SINE Alu -13 299 1 433 329 39 42 chr1 43797876 43798159 -238395505 - L2 LINE L2 -660 2654 2373 727 144 8 8 chr1 43798183 43798301 -238395363 + FLAM_C SINE Alu 1 118 -15 622 245 48 7 chr1 43798332 43798479 -238395185 - MIR SINE MIR -56 206 54 871 33 33 33 chr1 43798479 43798599 -238395065 + BC200 scRNA scRNA 2 121 -79 200 241 17 17 chr1 43798627 43798685 -238394979 - MIR SINE MIR -203 59 2 372 282 61 18 chr1 43798692 43798855 -238394809 - L2 LINE L2 -1180 2134 1965 1991 109 9 47 chr1 43799210 43799385 -238394279 - AluSx SINE Alu -4 308 149 2322 84 3 0 chr1 43799385 43799684 -238393980 - AluSp SINE Alu -12 301 2 1991 109 9 47 chr1 43799684 43799828 -238393836 - AluSx SINE Alu -163 149 1 1856 157 0 0 chr1 43799851 43800138 -238393526 - AluJo SINE Alu -24 288 2 1704 156 3 14 chr1 43800163 43800451 -238393213 - AluJo SINE Alu -24 288 4 233 222 0 19 chr1 43800793 43800847 -238392817 + (TATG)n Simple_repeat Simple_repeat 4 56 0 728 215 121 45 chr1 43801818 43802041 -238391623 + MIR SINE MIR 23 262 0 187 286 13 78 chr1 43802192 43802269 -238391395 + L2 LINE L2 3189 3260 -12 1511 181 0 7 chr1 43803061 43803337 -238390327 + AluJo SINE Alu 1 274 -38 300 120 0 0 chr1 43803343 43803393 -238390271 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 1927 143 40 3 chr1 43803412 43803737 -238389927 + AluSx SINE Alu 1 336 0 2019 104 44 0 chr1 43803923 43804220 -238389444 + AluSq SINE Alu 1 310 -3 249 33 0 0 chr1 43804245 43804275 -238389389 + (TC)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr1 43804410 43804431 -238389233 + GC_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr1 43805069 43805101 -238388563 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 400 343 6 56 chr1 43805101 43805279 -238388385 - L2 LINE L2 -13 3259 3091 222 372 11 11 chr1 43805270 43805364 -238388300 - MIR SINE MIR -95 113 20 * 2165 69 0 7 chr1 43805442 43805718 -238387946 + AluSp SINE Alu 1 274 -39 387 60 0 0 chr1 43805726 43805776 -238387888 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 204 366 12 12 chr1 43805880 43805962 -238387702 - L2 LINE L2 -682 2632 2551 1016 282 16 0 chr1 43806028 43806280 -238387384 - MIR SINE MIR -6 256 1 1175 80 11 70 chr1 43806494 43806535 -238387129 + L1MA8 LINE L1 5791 5833 -458 1718 139 6 61 chr1 43806535 43806865 -238386799 + AluJo SINE Alu 1 312 0 1175 80 11 70 chr1 43806865 43807010 -238386654 + L1MA8 LINE L1 5833 5966 -325 2317 81 0 0 chr1 43807010 43807307 -238386357 + AluSx SINE Alu 1 297 -15 1207 104 0 0 chr1 43807307 43807470 -238386194 + AluSg/x SINE Alu 132 294 -16 2171 109 3 0 chr1 43807491 43807795 -238385869 + AluSx SINE Alu 2 306 -6 1025 164 0 0 chr1 43808094 43808259 -238385405 - AluY SINE Alu -14 297 133 2275 83 7 0 chr1 43808259 43808561 -238385103 - AluSx SINE Alu -8 304 1 1582 172 0 47 chr1 43808879 43809199 -238384465 - AluJb SINE Alu -7 305 1 286 106 191 0 chr1 43809209 43809256 -238384408 - FLAM SINE Alu -7 126 71 452 273 49 35 chr1 43809271 43809414 -238384250 + L2 LINE L2 3169 3313 0 639 254 152 22 chr1 43809648 43809676 -238383988 - MIR SINE MIR -5 257 234 2379 81 0 0 chr1 43809676 43809983 -238383681 + AluSg SINE Alu 1 307 -3 639 254 152 22 chr1 43809983 43810178 -238383486 - MIR SINE MIR -28 234 5 1112 103 19 0 chr1 43810289 43810445 -238383219 - MER5A DNA MER1_type -14 175 17 910 237 75 13 chr1 43810448 43810676 -238382988 + MIR SINE MIR 4 245 -17 2186 91 3 44 chr1 43812805 43813123 -238380541 - AluY SINE Alu 0 311 7 2444 83 0 0 chr1 43813123 43813423 -238380241 - AluSx SINE Alu -12 300 1 842 114 0 45 chr1 43813699 43813831 -238379833 - FLAM_C SINE Alu -12 131 6 286 320 8 81 chr1 43814758 43814992 -238378672 + L2 LINE L2 2143 2359 -955 4728 101 34 11 chr1 43814994 43815207 -238378457 + L1MA2 LINE L1 5558 5765 -539 2288 119 0 22 chr1 43815207 43815526 -238378138 + AluSx SINE Alu 1 312 0 4728 101 34 11 chr1 43815526 43816038 -238377626 + L1MA2 LINE L1 5765 6300 -4 416 273 22 7 chr1 43816052 43816326 -238377338 + CT-rich Low_complexity Low_complexity 1 278 0 552 158 5 63 chr1 43816326 43816516 -238377148 + T-rich Low_complexity Low_complexity 2 180 0 241 163 0 23 chr1 43816522 43816565 -238377099 + CT-rich Low_complexity Low_complexity 1 42 0 838 176 18 6 chr1 43816565 43816730 -238376934 - AluJo/FRAM SINE Alu -8 304 138 516 181 0 0 chr1 43816730 43816813 -238376851 - AluJ/FLAM SINE Alu -228 84 2 34 0 0 0 chr1 43817470 43817504 -238376160 + AT_rich Low_complexity Low_complexity 1 34 0 610 276 82 21 chr1 43817606 43817936 -238375728 - L1ME4a LINE L1 -220 5901 5552 1993 118 36 16 chr1 43818300 43818605 -238375059 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr1 43818605 43818631 -238375033 + AT_rich Low_complexity Low_complexity 1 26 0 1759 150 31 7 chr1 43819074 43819361 -238374303 - AluSx SINE Alu -17 295 2 696 307 140 33 chr1 43819678 43820257 -238373407 + L2 LINE L2 1852 2492 -822 338 345 112 36 chr1 43820633 43820937 -238372727 + L2 LINE L2 2946 3272 0 2277 108 7 0 chr1 43821019 43821315 -238372349 - AluSq SINE Alu -14 299 2 314 227 13 0 chr1 43821324 43821399 -238372265 - L1MC/D LINE L1 -2149 5659 5584 684 111 0 0 chr1 43823250 43823340 -238370324 - 5S rRNA rRNA -31 90 1 225 302 0 0 chr1 43823401 43823464 -238370200 + L2 LINE L2 3249 3311 -2 1531 156 0 23 chr1 43824764 43824933 -238368731 - AluSq SINE Alu -14 299 136 2366 56 42 0 chr1 43824933 43825218 -238368446 - AluY SINE Alu -14 297 1 1531 156 0 23 chr1 43825218 43825304 -238368360 - AluSq SINE Alu -177 136 50 1294 161 0 9 chr1 43825795 43826012 -238367652 + AluSq SINE Alu 85 299 -14 225 302 0 0 chr1 43827311 43827374 -238366290 - L2 LINE L2 -2 3311 3249 684 111 0 0 chr1 43827435 43827525 -238366139 + 5S rRNA rRNA 1 90 -31 314 227 13 0 chr1 43829375 43829450 -238364214 + L1MC/D LINE L1 5584 5659 -2149 2277 108 7 0 chr1 43829459 43829755 -238363909 + AluSq SINE Alu 2 299 -14 338 345 112 36 chr1 43829837 43830141 -238363523 - L2 LINE L2 0 3272 2946 696 307 140 33 chr1 43830517 43831096 -238362568 - L2 LINE L2 -822 2492 1852 1744 153 31 7 chr1 43831413 43831700 -238361964 + AluSx SINE Alu 2 295 -17 1993 118 36 16 chr1 43832150 43832479 -238361185 - AluSx SINE Alu 0 335 1 610 276 82 21 chr1 43832843 43833173 -238360491 + L1ME4a LINE L1 5552 5901 -220 34 0 0 0 chr1 43833275 43833309 -238360355 + AT_rich Low_complexity Low_complexity 1 34 0 516 181 0 0 chr1 43833966 43834049 -238359615 + AluJ/FLAM SINE Alu 2 84 -228 838 176 18 6 chr1 43834049 43834214 -238359450 + AluJo/FRAM SINE Alu 138 304 -8 241 163 0 23 chr1 43834214 43834257 -238359407 + GA-rich Low_complexity Low_complexity 1 42 0 552 222 11 42 chr1 43834263 43834618 -238359046 + A-rich Low_complexity Low_complexity 1 344 0 473 203 21 14 chr1 43834583 43834726 -238358938 + GA-rich Low_complexity Low_complexity 1 144 0 * 4795 98 35 10 chr1 43834740 43835251 -238358413 - L1MA2 LINE L1 -4 6300 5764 2288 119 0 22 chr1 43835251 43835570 -238358094 - AluSx SINE Alu 0 312 1 4795 98 35 10 chr1 43835570 43835783 -238357881 - L1MA2 LINE L1 -540 5764 5558 286 320 8 81 chr1 43835785 43836019 -238357645 - L2 LINE L2 -955 2359 2143 905 116 0 31 chr1 43836945 43837074 -238356590 + FLAM_C SINE Alu 6 130 -13 2444 83 0 0 chr1 43837350 43837650 -238356014 + AluSx SINE Alu 1 300 -12 2186 91 3 44 chr1 43837650 43837968 -238355696 + AluY SINE Alu 7 311 0 812 237 75 13 chr1 43840094 43840322 -238353342 - MIR SINE MIR -17 245 4 1042 103 19 0 chr1 43840325 43840481 -238353183 + MER5A DNA MER1_type 17 175 -14 564 231 174 20 chr1 43840592 43840787 -238352877 + MIR SINE MIR 5 229 -33 2511 81 0 0 chr1 43840787 43841094 -238352570 - AluSg SINE Alu -1 309 3 267 196 59 0 chr1 43841163 43841214 -238352450 - L2 LINE L2 -8 3305 3252 420 262 107 17 chr1 43841434 43841477 -238352187 + MIR SINE MIR 17 55 -197 1777 186 3 10 chr1 43841477 43841784 -238351880 + AluJo SINE Alu 2 306 -6 420 262 107 17 chr1 43841784 43841925 -238351739 + MIR SINE MIR 55 219 -33 192 296 113 28 chr1 43842005 43842147 -238351517 - L2 LINE L2 -202 3070 2917 1489 110 0 0 chr1 43842211 43842402 -238351262 + AluSq SINE Alu 38 228 -85 2455 78 0 0 chr1 43842766 43843059 -238350605 + AluSx SINE Alu 1 293 -19 6544 59 17 57 chr1 43843176 43844307 -238349357 + SVA Other Other 432 1386 0 2406 90 3 0 chr1 43844756 43845088 -238348576 + AluSp SINE Alu 1 333 0 1173 186 0 5 chr1 43845094 43845340 -238348324 + AluJo SINE Alu 89 333 0 473 356 37 13 chr1 43845494 43845792 -238347872 - L2 LINE L2 -1120 2194 1890 53 49 0 0 chr1 43845918 43845999 -238347665 + AT_rich Low_complexity Low_complexity 1 81 0 195 42 0 0 chr1 43846048 43846072 -238347592 + (TAA)n Simple_repeat Simple_repeat 2 25 0 225 267 128 0 chr1 43846093 43846179 -238347485 + L1ME3A LINE L1 6037 6133 -37 35 19 0 19 chr1 43846227 43846246 -238347418 + AT_rich Low_complexity Low_complexity 1 19 -33 771 147 0 0 chr1 43846246 43846362 -238347302 + FLAM_C SINE Alu 3 118 -15 35 19 0 19 chr1 43846362 43846395 -238347269 + AT_rich Low_complexity Low_complexity 19 52 0 849 120 8 0 chr1 43846573 43846690 -238346974 + FLAM_C SINE Alu 1 118 -25 204 40 0 0 chr1 43846694 43846719 -238346945 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1447 142 38 31 chr1 43848053 43848341 -238345323 + AluSx SINE Alu 9 298 -14 207 276 17 0 chr1 43848861 43848919 -238344745 - L3 LINE CR1 -30 1547 1489 2332 95 3 0 chr1 43849126 43849421 -238344243 + AluSx SINE Alu 1 296 -16 292 351 0 45 chr1 43849494 43849648 -238344016 - L3 LINE CR1 -779 798 652 2039 100 7 4 chr1 43849752 43850031 -238343633 - AluSq SINE Alu -13 300 21 244 330 142 17 chr1 43850264 43850503 -238343161 - L2 LINE L2 -364 2950 2682 849 217 0 0 chr1 43850867 43851024 -238342640 + FRAM SINE Alu 1 157 -19 23 33 0 0 chr1 43851221 43851251 -238342413 + AT_rich Low_complexity Low_complexity 1 30 0 2410 88 0 0 chr1 43851441 43851737 -238341927 + AluSg SINE Alu 1 296 -14 2958 16 0 0 chr1 43852564 43852882 -238340782 + AluYb8 SINE Alu 1 318 0 1791 193 3 0 chr1 43852891 43853186 -238340478 - AluJo SINE Alu -16 296 1 387 321 88 8 chr1 43853478 43853727 -238339937 + L2 LINE L2 1806 2074 -1240 419 276 141 0 chr1 43853953 43854138 -238339526 + L2 LINE L2 2164 2374 -940 1839 153 7 17 chr1 43854272 43854573 -238339091 + AluSx SINE Alu 1 298 -14 303 275 254 11 chr1 43854574 43854763 -238338901 - MIR SINE MIR -5 257 23 262 280 174 8 chr1 43854883 43855015 -238338649 + L2 LINE L2 2897 3050 -222 183 224 0 20 chr1 43855364 43855413 -238338251 - L2 LINE L2 -98 3215 3168 1896 163 7 0 chr1 43855664 43855953 -238337711 + AluJb SINE Alu 1 291 -21 2157 116 3 10 chr1 43857304 43857607 -238336057 + AluSx SINE Alu 1 301 -11 2252 104 10 0 chr1 43857616 43857904 -238335760 + AluSx SINE Alu 1 291 -21 2177 103 0 7 chr1 43858036 43858327 -238335337 + AluSx SINE Alu 1 289 -23 341 307 149 19 chr1 43858590 43858805 -238334859 - MIR SINE MIR -9 253 11 2295 107 0 16 chr1 43859009 43859317 -238334347 + AluSx SINE Alu 2 304 -8 439 273 73 0 chr1 43859584 43859694 -238333970 - MIR SINE MIR -64 144 27 192 186 70 0 chr1 43859715 43859758 -238333906 + MIR SINE MIR 101 146 -62 24 0 0 0 chr1 43859771 43859795 -238333869 + AT_rich Low_complexity Low_complexity 1 24 0 2511 72 0 0 chr1 43859884 43860188 -238333476 - AluY SINE Alu -7 304 1 1788 125 36 50 chr1 43860190 43860493 -238333171 - AluJb SINE Alu -13 299 1 25 0 0 0 chr1 43860542 43860567 -238333097 + AT_rich Low_complexity Low_complexity 1 25 0 1621 142 0 0 chr1 43860572 43860797 -238332867 + AluSx SINE Alu 58 334 0 469 0 0 0 chr1 43860797 43860849 -238332815 + (TAAAA)n Simple_repeat Simple_repeat 1 145 0 248 261 125 0 chr1 43860852 43860940 -238332724 + MIR SINE MIR 158 256 -6 229 287 85 54 chr1 43861062 43861191 -238332473 - MIR SINE MIR -128 134 2 211 251 15 15 chr1 43861990 43862056 -238331608 - MIR SINE MIR -58 150 84 2075 126 7 16 chr1 43864452 43864761 -238328903 + AluSx SINE Alu 1 306 -6 320 262 44 66 chr1 43864825 43865008 -238328656 - MIR SINE MIR 0 262 84 2039 132 0 10 chr1 43865163 43865466 -238328198 + AluSx SINE Alu 1 300 -12 2182 124 0 0 chr1 43866196 43866487 -238327177 - AluSg SINE Alu -18 292 2 806 91 8 16 chr1 43866521 43866642 -238327022 + AluJb SINE Alu 1 120 -192 34 0 0 0 chr1 43866646 43866680 -238326984 + AT_rich Low_complexity Low_complexity 1 34 0 2095 125 7 3 chr1 43866822 43867109 -238326555 + AluSx SINE Alu 1 288 -24 383 118 0 15 chr1 43867109 43867177 -238326487 + (GGGA)n Simple_repeat Simple_repeat 1 67 0 419 203 146 32 chr1 43867190 43867348 -238326316 - MIR SINE MIR -82 180 5 257 265 210 19 chr1 43867380 43867542 -238326122 - MIR3 SINE MIR 0 208 16 545 194 74 0 chr1 43867591 43867699 -238325965 + FLAM_A SINE Alu 1 116 -17 444 325 28 73 chr1 43867838 43867981 -238325683 + L3 LINE CR1 684 809 -768 2227 126 0 3 chr1 43867981 43868283 -238325381 - AluSx SINE Alu -11 301 1 444 325 28 73 chr1 43868283 43868425 -238325239 + L3 LINE CR1 809 956 -621 300 296 0 23 chr1 43868536 43868624 -238325040 - MIR3 SINE MIR -14 194 109 1674 102 121 15 chr1 43868856 43869120 -238324544 - AluSg1 SINE Alu -17 292 1 2257 92 0 0 chr1 43869186 43869469 -238324195 + AluSg SINE Alu 20 302 -8 1092 164 0 0 chr1 43869469 43869634 -238324030 + AluY SINE Alu 133 297 -14 2313 115 3 0 chr1 43869933 43870238 -238323426 - AluSx SINE Alu -6 306 1 239 191 0 0 chr1 43870286 43870328 -238323336 - 5S rRNA rRNA -79 42 1 2325 102 3 6 chr1 43870510 43870823 -238322841 + AluSp SINE Alu 1 312 -1 26 30 0 0 chr1 43871240 43871273 -238322391 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 43872279 43872304 -238321360 + AT_rich Low_complexity Low_complexity 1 25 0 312 146 4 22 chr1 43873797 43873856 -238319808 + Alu SINE Alu 1 44 -258 1774 128 0 0 chr1 43873856 43874098 -238319566 - AluSx SINE Alu -70 242 1 2471 185 44 4 chr1 43874102 43874582 -238319082 + L1ME1 LINE L1 5610 6108 -58 1536 194 3 28 chr1 43874585 43874873 -238318791 + AluJo SINE Alu 1 281 -31 693 219 58 102 chr1 43875209 43875442 -238318222 - L2 LINE L2 -5 3308 3091 2321 99 0 0 chr1 43875442 43875735 -238317929 - AluSg SINE Alu -17 293 1 693 219 58 102 chr1 43875735 43875826 -238317838 - L2 LINE L2 -222 3091 2998 250 170 0 19 chr1 43875934 43875987 -238317677 + AluSp/q SINE Alu 252 303 0 201 74 0 0 chr1 43875989 43876016 -238317648 + (CA)n Simple_repeat Simple_repeat 1 27 0 464 273 27 20 chr1 43876129 43876279 -238317385 + MER117 DNA MER1_type 4 154 -43 2388 72 0 3 chr1 43876536 43876827 -238316837 - AluY SINE Alu -21 290 1 189 74 0 0 chr1 43876893 43876920 -238316744 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2314 102 3 0 chr1 43877033 43877337 -238316327 - AluSx SINE Alu -7 305 1 25 0 0 0 chr1 43877441 43877466 -238316198 + AT_rich Low_complexity Low_complexity 1 25 0 1740 188 7 0 chr1 43877467 43877759 -238315905 + AluJo SINE Alu 5 298 -14 1922 163 3 0 chr1 43877759 43878041 -238315623 + AluSx SINE Alu 1 286 -26 219 36 0 0 chr1 43878041 43878069 -238315595 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 1922 163 3 0 chr1 43878069 43878080 -238315584 + AluSx SINE Alu 286 295 -17 292 292 0 0 chr1 43879048 43879120 -238314544 + (TATG)n Simple_repeat Simple_repeat 4 75 0 1947 129 32 7 chr1 43879591 43879870 -238313794 + AluSg SINE Alu 1 286 -24 2825 111 25 7 chr1 43879920 43880361 -238313303 + L1MB3 LINE L1 5735 6183 0 496 251 62 56 chr1 43880414 43880593 -238313071 - MIR SINE MIR -27 235 56 2579 48 0 19 chr1 43880783 43881092 -238312572 + AluY SINE Alu 1 303 -8 1095 137 159 4 chr1 43881320 43881553 -238312111 + L1MA9 LINE L1 6044 6312 0 266 85 0 21 chr1 43881569 43881616 -238312048 + (GGA)n Simple_repeat Simple_repeat 3 48 0 657 198 0 0 chr1 43883184 43883327 -238310337 + FLAM_A SINE Alu 4 146 0 253 347 73 8 chr1 43883478 43883602 -238310062 - L2 LINE L2 -4 3268 3137 1902 144 3 38 chr1 43883655 43883975 -238309689 + AluJo SINE Alu 2 310 -2 2277 87 3 34 chr1 43883975 43884296 -238309368 + AluSq SINE Alu 1 311 -2 228 263 0 18 chr1 43886055 43886112 -238307552 - L2 LINE L2 -4 3268 3213 2353 69 21 10 chr1 43886415 43886706 -238306958 - AluY SINE Alu -17 294 1 878 190 74 0 chr1 43886753 43886916 -238306748 + FAM SINE Alu 1 175 0 277 195 65 130 chr1 43887044 43887213 -238306451 + L1ME4a LINE L1 5964 6121 0 676 268 54 25 chr1 43887511 43887750 -238305914 + MIR SINE MIR 3 248 -14 1804 139 38 7 chr1 43887889 43888177 -238305487 - AluSx SINE Alu -15 297 1 2231 104 9 25 chr1 43888305 43888621 -238305043 - AluSx SINE Alu -1 311 1 1952 161 133 3 chr1 43888631 43889023 -238304641 + MLT1C LTR MaLR 1 443 -24 248 61 30 0 chr1 43889036 43889069 -238304595 - Alu SINE Alu -186 116 83 2145 87 0 4 chr1 43889122 43889397 -238304267 - AluSx SINE Alu -18 294 21 670 253 47 11 chr1 43889641 43889831 -238303833 - MIR SINE MIR -16 246 50 394 261 35 9 chr1 43890038 43890153 -238303511 - MIR SINE MIR -57 151 34 833 243 47 19 chr1 43890195 43890409 -238303255 + MIR SINE MIR 21 240 -22 231 233 0 0 chr1 43890661 43890704 -238302960 - HsTC2 DNA Tc2 -4 1894 1852 545 235 59 12 chr1 43890705 43890875 -238302789 - MIR SINE MIR -71 191 14 1929 123 0 69 chr1 43890941 43891087 -238302577 + AluJb SINE Alu 1 115 -197 2108 110 3 58 chr1 43891087 43891413 -238302251 + AluSg SINE Alu 1 308 -2 1929 123 0 69 chr1 43891413 43891583 -238302081 + AluJb SINE Alu 115 295 -17 2303 109 7 0 chr1 43891619 43891923 -238301741 + AluSx SINE Alu 1 306 -6 2277 110 0 3 chr1 43892574 43892874 -238300790 + AluSg1 SINE Alu 1 299 -10 522 252 70 18 chr1 43893201 43893379 -238300285 + MIR SINE MIR 19 222 -40 1967 127 10 3 chr1 43893379 43893697 -238299967 + AluSx SINE Alu 1 312 0 522 252 70 18 chr1 43893697 43893734 -238299930 + MIR SINE MIR 222 256 -6 341 256 60 17 chr1 43893966 43894083 -238299581 - L2 LINE L2 0 3313 3192 676 125 29 0 chr1 43894083 43894187 -238299477 + U6 snRNA snRNA 1 107 0 1791 46 17 8 chr1 43894199 43894436 -238299228 + L1MA1 LINE L1 6064 6302 0 2060 108 11 0 chr1 43894465 43894743 -238298921 + AluSg SINE Alu 1 281 -29 2358 93 3 13 chr1 43894943 43895254 -238298410 + AluSp SINE Alu 1 308 -5 203 353 0 44 chr1 43895372 43895508 -238298156 - L2 LINE L2 -880 2434 2305 207 0 0 0 chr1 43895685 43895708 -238297956 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2399 64 7 3 chr1 43895789 43896087 -238297577 - AluSp SINE Alu -10 303 5 306 0 0 0 chr1 43897560 43897594 -238296070 + (CA)n Simple_repeat Simple_repeat 2 35 0 366 107 0 0 chr1 43898696 43898752 -238294912 + (CA)n Simple_repeat Simple_repeat 2 57 0 582 293 167 65 chr1 43898753 43900502 -238293162 + L2 LINE L2 1353 3262 -10 833 103 19 0 chr1 43900549 43900656 -238293008 - FRAM SINE Alu -44 132 24 289 81 0 0 chr1 43900821 43900858 -238292806 - tRNA-Glu-GAG tRNA tRNA -38 37 1 2294 113 0 0 chr1 43901079 43901372 -238292292 - AluSx SINE Alu -19 293 1 920 158 0 0 chr1 43902126 43902265 -238291399 - FRAM SINE Alu -13 163 25 1688 159 19 11 chr1 43902432 43902702 -238290962 - AluSx SINE Alu -17 295 24 2314 101 7 3 chr1 43902742 43903038 -238290626 + AluSg SINE Alu 1 297 -13 1142 204 47 58 chr1 43903329 43903446 -238290218 + AluJo SINE Alu 18 135 -177 2427 50 4 0 chr1 43903446 43903725 -238289939 + AluY SINE Alu 2 281 -30 279 0 0 0 chr1 43903728 43903759 -238289905 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1142 204 47 58 chr1 43903759 43903912 -238289752 + AluJo SINE Alu 137 289 -23 2006 144 0 10 chr1 43904588 43904894 -238288770 + AluJb SINE Alu 1 303 -9 22 35 0 0 chr1 43905039 43905068 -238288596 + AT_rich Low_complexity Low_complexity 1 29 0 180 77 0 0 chr1 43905081 43905107 -238288557 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2105 112 0 24 chr1 43905551 43905863 -238287801 + AluSg SINE Alu 1 305 0 354 220 85 50 chr1 43905892 43906033 -238287631 - MIR SINE MIR -68 194 49 815 75 9 0 chr1 43906512 43906619 -238287045 + AluY SINE Alu 196 303 -8 215 261 15 52 chr1 43909638 43909772 -238283892 + (CCCCG)n Simple_repeat Simple_repeat 2 130 0 21 0 0 0 chr1 43909783 43909804 -238283860 + GC_rich Low_complexity Low_complexity 1 21 0 684 261 99 50 chr1 43912558 43912880 -238280784 + L2 LINE L2 2920 3257 -15 439 122 12 12 chr1 43912896 43912934 -238280730 + (TC)n Simple_repeat Simple_repeat 1 38 -44 2471 47 13 3 chr1 43912934 43913234 -238280430 - AluY SINE Alu -8 303 1 439 122 12 12 chr1 43913234 43913277 -238280387 + (TC)n Simple_repeat Simple_repeat 37 82 0 2410 81 0 10 chr1 43913279 43913586 -238280078 - AluY SINE Alu -7 304 1 850 138 0 0 chr1 43913606 43913722 -238279942 + FLAM_C SINE Alu 7 122 -21 237 132 0 0 chr1 43913722 43913760 -238279904 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 2439 91 0 0 chr1 43913760 43914057 -238279607 - AluSx SINE Alu -15 297 1 864 138 0 0 chr1 43914077 43914193 -238279471 + FLAM_C SINE Alu 7 122 -21 188 22 0 89 chr1 43914233 43914278 -238279386 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2212 93 0 0 chr1 43914281 43914560 -238279104 - AluSx SINE Alu -33 279 1 1733 172 0 47 chr1 43914878 43915198 -238278466 - AluJb SINE Alu -7 305 1 266 106 191 0 chr1 43915208 43915255 -238278409 - FLAM SINE Alu -7 126 71 448 273 49 35 chr1 43915270 43915413 -238278251 + L2 LINE L2 3169 3313 0 2401 88 0 3 chr1 43915675 43915971 -238277693 + AluSq SINE Alu 1 295 -18 502 302 117 0 chr1 43916743 43916922 -238276742 + MIR SINE MIR 59 258 -4 1889 176 0 0 chr1 43917397 43917686 -238275978 - AluJb SINE Alu -17 295 7 2449 90 0 0 chr1 43917955 43918256 -238275408 + AluSx SINE Alu 1 301 -11 599 151 0 0 chr1 43918399 43918485 -238275179 + FRAM SINE Alu 72 157 -19 1174 135 6 0 chr1 43918525 43918688 -238274976 - AluSg/x SINE Alu -14 296 133 1798 159 69 134 chr1 43918734 43918928 -238274736 + MER21A LTR ERV1 17 222 -709 1810 165 0 48 chr1 43918928 43919244 -238274420 - AluJb SINE Alu -11 301 1 1806 143 28 7 chr1 43919245 43919532 -238274132 - AluJo SINE Alu -19 293 1 2578 68 0 7 chr1 43919542 43919849 -238273815 - AluSc SINE Alu -4 305 1 1798 159 69 134 chr1 43919849 43920208 -238273456 + MER21A LTR ERV1 231 546 -385 952 183 6 0 chr1 43920220 43920384 -238273280 - AluJo/FRAM SINE Alu -1 301 137 2494 69 13 0 chr1 43920387 43920690 -238272974 - AluSp SINE Alu -6 307 1 1349 158 174 19 chr1 43920708 43920967 -238272697 - AluSg SINE Alu -1 299 1 358 176 27 40 chr1 43920970 43921044 -238272620 + MER21B LTR ERV1 565 637 -226 2200 90 35 0 chr1 43921052 43921340 -238272324 + AluSx SINE Alu 1 298 -14 2523 83 0 0 chr1 43921346 43921648 -238272016 + AluSc SINE Alu 1 302 -7 1289 117 0 0 chr1 43921648 43921827 -238271837 + AluSp SINE Alu 134 312 -1 1053 157 43 24 chr1 43921828 43922038 -238271626 + MER21B LTR ERV1 628 841 -22 2318 97 0 10 chr1 43922047 43922358 -238271306 + AluSg1 SINE Alu 2 309 0 409 150 80 40 chr1 43922392 43922492 -238271172 + L1MC5 LINE L1 7805 7908 -53 207 313 71 18 chr1 43922560 43922672 -238270992 + MER91C DNA MER1_type 23 140 0 * 401 254 286 0 chr1 43922672 43922738 -238270926 + MIR SINE MIR 116 217 -45 202 329 0 0 chr1 43923230 43923303 -238270361 + (TGAA)n Simple_repeat Simple_repeat 3 75 0 2182 87 24 21 chr1 43923336 43923624 -238270040 + AluSc SINE Alu 1 289 -20 474 313 65 14 chr1 43923624 43923841 -238269823 - MIR SINE MIR -15 247 20 313 261 0 0 chr1 43925274 43925339 -238268325 - MIR SINE MIR -108 154 90 295 158 0 53 chr1 43925366 43925423 -238268241 + L2 LINE L2 3219 3272 0 680 159 93 0 chr1 43925928 43926035 -238267629 - AluJb SINE Alu -194 118 2 200 328 172 0 chr1 43926046 43926162 -238267502 + L2 LINE L2 3137 3272 0 625 176 0 50 chr1 43926226 43926345 -238267319 - MER91B DNA MER1_type -52 138 26 2310 94 0 36 chr1 43926739 43926856 -238266808 + AluSx SINE Alu 1 121 -191 2281 72 7 36 chr1 43926856 43927162 -238266502 + AluY SINE Alu 1 297 -14 2310 94 0 36 chr1 43927162 43927352 -238266312 + AluSx SINE Alu 121 297 -15 245 217 217 12 chr1 43927353 43927436 -238266228 + MIR SINE MIR 25 124 -84 204 311 140 6 chr1 43929280 43929444 -238264220 - L2 LINE L2 -428 2886 2701 612 329 69 9 chr1 43929843 43930059 -238263605 - MIR SINE MIR -32 230 2 318 278 62 87 chr1 43930246 43930487 -238263177 + L1MEc LINE L1 976 1210 -5186 285 241 43 86 chr1 43931046 43931162 -238262502 + MIR SINE MIR 108 218 -44 861 240 36 48 chr1 43931224 43931474 -238262190 + MIR SINE MIR 16 262 0 189 351 0 0 chr1 43931486 43931543 -238262121 + MIR SINE MIR 156 212 -50 717 240 62 40 chr1 43931659 43931884 -238261780 + MIR SINE MIR 27 256 -6 22 80 0 0 chr1 43933096 43933146 -238260518 + GC_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 43933379 43933401 -238260263 + GC_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr1 43933454 43933500 -238260164 + GC_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr1 43933630 43933654 -238260010 + GC_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr1 43933720 43933751 -238259913 + GC_rich Low_complexity Low_complexity 1 31 0 265 277 11 43 chr1 43933791 43933975 -238259689 + C-rich Low_complexity Low_complexity 3 180 0 21 0 0 0 chr1 43934060 43934081 -238259583 + GC_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr1 43934719 43934751 -238258913 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 406 343 6 56 chr1 43934751 43934929 -238258735 - L2 LINE L2 -13 3259 3091 227 372 11 11 chr1 43934920 43935014 -238258650 - MIR SINE MIR -95 113 20 * 2306 74 0 11 chr1 43935092 43935376 -238258288 + AluSp SINE Alu 1 281 -32 387 60 0 0 chr1 43935376 43935426 -238258238 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 208 366 12 12 chr1 43935530 43935612 -238258052 - L2 LINE L2 -682 2632 2551 1015 282 16 0 chr1 43935678 43935930 -238257734 - MIR SINE MIR -6 256 1 1117 80 11 70 chr1 43936144 43936185 -238257479 + L1MA8 LINE L1 5791 5833 -458 1872 139 6 61 chr1 43936185 43936515 -238257149 + AluJo SINE Alu 1 312 0 1117 80 11 70 chr1 43936515 43936660 -238257004 + L1MA8 LINE L1 5833 5966 -325 2462 81 0 0 chr1 43936660 43936957 -238256707 + AluSx SINE Alu 1 297 -15 1320 111 0 0 chr1 43936957 43937129 -238256535 + AluSg/x SINE Alu 132 303 -7 2428 83 3 10 chr1 43937141 43937455 -238256209 + AluSp SINE Alu 2 313 0 2161 87 22 0 chr1 43937536 43937835 -238255829 + AluSq SINE Alu 2 306 0 638 235 0 22 chr1 43937846 43937982 -238255682 + FLAM_C SINE Alu 8 140 -3 250 287 57 41 chr1 43938486 43938608 -238255056 - L2 LINE L2 -5 3267 3144 691 79 0 206 chr1 43938844 43939009 -238254655 + AluSg SINE Alu 2 132 -178 2516 68 0 0 chr1 43939010 43939317 -238254347 + AluY SINE Alu 1 307 -4 741 113 61 104 chr1 43939318 43939492 -238254172 + PABL_A-int LTR ERV1 1986 2151 -4607 2325 106 3 0 chr1 43939492 43939794 -238253870 + AluSx SINE Alu 1 303 -9 741 113 61 104 chr1 43939794 43939831 -238253833 + PABL_A-int LTR ERV1 2151 2188 -4570 * 6072 74 51 63 chr1 43939828 43939948 -238253716 + PABL_A-int LTR ERV1 3918 4038 -2560 2392 85 0 3 chr1 43939948 43940242 -238253422 + AluSq SINE Alu 1 293 -20 6072 74 51 63 chr1 43940242 43940345 -238253319 + PABL_A-int LTR ERV1 4038 4141 -2457 2279 96 3 0 chr1 43940345 43940638 -238253026 + AluSp SINE Alu 3 296 -17 6072 74 51 63 chr1 43940638 43940872 -238252792 + PABL_A-int LTR ERV1 4141 4376 -2222 2454 76 0 3 chr1 43940872 43941176 -238252488 - AluY SINE Alu -8 303 1 6072 74 51 63 chr1 43941176 43941803 -238251861 + PABL_A-int LTR ERV1 4376 4991 -1607 1982 128 6 42 chr1 43941803 43941974 -238251690 - AluSc SINE Alu -7 302 145 2351 82 0 3 chr1 43941974 43942268 -238251396 - AluY SINE Alu -18 293 1 1982 128 6 42 chr1 43942268 43942409 -238251255 - AluSc SINE Alu -164 145 1 2306 120 3 0 chr1 43942409 43942717 -238250947 - AluSx SINE Alu -3 309 1 447 90 0 30 chr1 43942717 43942784 -238250880 - AluSq/x SINE Alu -176 136 72 1299 145 0 0 chr1 43942786 43942972 -238250692 - AluSx SINE Alu -116 196 11 5751 86 40 8 chr1 43942984 43943864 -238249800 + PABL_A-int LTR ERV1 3493 4400 -615 563 156 4 3 chr1 43943869 43944097 -238249567 + AluSc SINE Alu 7 308 -1 2271 122 0 3 chr1 43944414 43944726 -238248938 - AluSx SINE Alu 0 312 2 1156 257 57 61 chr1 43944738 43944976 -238248688 + L2 LINE L2 2228 2465 -849 2436 103 0 0 chr1 43944976 43945278 -238248386 - AluSq SINE Alu -11 302 1 1156 257 57 61 chr1 43945278 43945529 -238248135 + L2 LINE L2 2465 2715 -599 529 129 0 0 chr1 43945531 43945601 -238248063 + AluS SINE Alu 2 71 -241 2327 99 3 0 chr1 43945603 43945905 -238247759 + AluSp SINE Alu 1 303 -10 583 315 116 14 chr1 43945929 43946311 -238247353 + L2 LINE L2 2752 3184 -129 1601 201 20 3 chr1 43946377 43946670 -238246994 - AluJo SINE Alu -14 298 1 2082 134 0 0 chr1 43946681 43947011 -238246653 - AluSx SINE Alu 0 330 1 2589 71 0 0 chr1 43947062 43947371 -238246293 + AluY SINE Alu 1 309 -2 1294 232 43 0 chr1 43947411 43947713 -238245951 + L1MC1 LINE L1 5963 6277 -56 328 212 18 26 chr1 43947737 43947801 -238245863 - Charlie5 DNA MER1_type -122 2502 2438 2339 81 7 0 chr1 43947801 43948097 -238245567 + AluY SINE Alu 1 298 -13 328 212 18 26 chr1 43948097 43948145 -238245519 - Charlie5 DNA MER1_type -186 2438 2391 1948 104 0 68 chr1 43948156 43948282 -238245382 + AluSx SINE Alu 12 145 -167 2309 120 0 0 chr1 43948282 43948590 -238245074 + AluSg SINE Alu 2 309 -1 1948 104 0 68 chr1 43948590 43948770 -238244894 + AluSx SINE Alu 145 297 -15 190 318 108 16 chr1 43949098 43949227 -238244437 - L2 LINE L2 -14 3258 3118 1269 98 10 36 chr1 43949651 43949844 -238243820 - AluSg/x SINE Alu 0 312 125 440 206 151 8 chr1 43949851 43949977 -238243687 - L1ME1 LINE L1 0 6166 6023 2226 102 0 23 chr1 43949977 43950150 -238243514 - AluSg SINE Alu -9 301 136 2321 107 3 7 chr1 43950150 43950460 -238243204 - AluSx SINE Alu -3 309 1 2226 102 0 23 chr1 43950460 43950590 -238243074 - AluSg SINE Alu -174 136 5 2191 109 3 16 chr1 43950590 43950893 -238242771 - AluSg SINE Alu -11 299 1 862 148 0 22 chr1 43950895 43951030 -238242634 - AluJo/FLAM SINE Alu -169 133 2 1219 191 89 39 chr1 43951034 43951526 -238242138 - L1MD2 LINE L1 -1 6358 5792 775 230 137 32 chr1 43951526 43951804 -238241860 - MLT1C LTR MaLR 0 467 161 913 152 5 99 chr1 43951809 43951958 -238241706 + AluJo SINE Alu 1 130 -182 2078 129 7 0 chr1 43951958 43952253 -238241411 + AluSx SINE Alu 1 297 -15 913 152 5 99 chr1 43952253 43952294 -238241370 + AluJo SINE Alu 130 173 -139 530 168 36 90 chr1 43952319 43952413 -238241251 - MLT1C LTR MaLR -328 177 94 2250 88 20 0 chr1 43952413 43952709 -238240955 - AluSp SINE Alu -11 302 1 530 168 36 90 chr1 43952709 43952781 -238240883 - MLT1C LTR MaLR -411 94 20 1128 151 5 154 chr1 43952802 43953018 -238240646 - L1MD2 LINE L1 -565 5794 5548 1506 174 0 23 chr1 43953018 43953277 -238240387 + AluJo SINE Alu 1 253 -59 1128 151 5 154 chr1 43953277 43953382 -238240282 - L1MD2 LINE L1 -811 5548 5536 2458 86 3 0 chr1 43953382 43953684 -238239980 + AluSg SINE Alu 1 303 -7 1128 151 5 154 chr1 43953684 43953744 -238239920 - L1MD2 LINE L1 -823 5536 5469 2930 233 72 142 chr1 43953910 43953970 -238239694 - L2 LINE L2 -250 3063 3000 2485 84 0 0 chr1 43953970 43954280 -238239384 + AluY SINE Alu 1 310 -1 2930 233 72 142 chr1 43954280 43954584 -238239080 - L2 LINE L2 -313 3000 2676 2233 80 18 7 chr1 43954584 43954870 -238238794 + AluSc SINE Alu 1 289 -20 2930 233 72 142 chr1 43954870 43955309 -238238355 - L2 LINE L2 -637 2676 2208 865 123 0 8 chr1 43955309 43955439 -238238225 - AluJb SINE Alu -179 133 5 2930 233 72 142 chr1 43955439 43955512 -238238152 - L2 LINE L2 -1105 2208 2131 2399 101 0 0 chr1 43955512 43955819 -238237845 - AluSx SINE Alu -5 307 1 2930 233 72 142 chr1 43955819 43956363 -238237301 - L2 LINE L2 -1182 2131 1622 448 284 126 6 chr1 43956552 43956735 -238236929 - MIR SINE MIR -6 256 52 879 163 0 21 chr1 43956735 43956876 -238236788 - FLAM_C SINE Alu -5 138 1 2536 61 0 0 chr1 43956951 43957246 -238236418 + AluY SINE Alu 1 295 -16 1976 123 13 47 chr1 43957389 43957560 -238236104 - AluSx SINE Alu -6 306 149 2457 69 7 16 chr1 43957560 43957864 -238235800 - AluSq SINE Alu -11 302 2 1976 123 13 47 chr1 43957864 43958009 -238235655 - AluSx SINE Alu -163 149 1 1998 157 0 0 chr1 43958032 43958319 -238235345 - AluJo SINE Alu -24 288 2 1846 156 3 14 chr1 43958344 43958632 -238235032 - AluJo SINE Alu -24 288 4 233 222 0 19 chr1 43958974 43959028 -238234636 + (TATG)n Simple_repeat Simple_repeat 4 56 0 712 216 122 45 chr1 43959986 43960220 -238233444 + MIR SINE MIR 8 262 0 190 286 13 78 chr1 43960371 43960448 -238233216 + L2 LINE L2 3189 3260 -12 1582 185 0 7 chr1 43961240 43961516 -238232148 + AluJo SINE Alu 1 274 -38 333 100 0 0 chr1 43961522 43961572 -238232092 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 2007 129 40 7 chr1 43961591 43961893 -238231771 + AluSx SINE Alu 1 312 0 2125 104 44 0 chr1 43962094 43962391 -238231273 + AluSq SINE Alu 1 310 -3 249 33 0 0 chr1 43962416 43962446 -238231218 + (TC)n Simple_repeat Simple_repeat 2 31 0 523 297 113 0 chr1 43962471 43962656 -238231008 + MIR SINE MIR 36 241 -21 2024 93 58 21 chr1 43963093 43963384 -238230280 - AluSq SINE Alu -11 302 1 2131 116 41 0 chr1 43964054 43964346 -238229318 - AluSx SINE Alu -8 304 1 216 97 0 0 chr1 43965008 43965039 -238228625 + (A)n Simple_repeat Simple_repeat 1 31 0 2154 100 28 0 chr1 43965214 43965504 -238228160 - AluSx SINE Alu -9 303 6 1036 149 6 12 chr1 43965597 43965765 -238227899 + AluJb SINE Alu 9 175 -137 192 40 0 0 chr1 43965830 43965855 -238227809 + (CA)n Simple_repeat Simple_repeat 2 26 0 268 233 16 23 chr1 43965855 43965984 -238227680 + GA-rich Low_complexity Low_complexity 3 130 0 393 327 80 0 chr1 43966145 43966295 -238227369 + MIR3 SINE MIR 44 205 -3 192 308 39 160 chr1 43966305 43966662 -238227002 - L2 LINE L2 -40 3232 2919 653 225 98 98 chr1 43966781 43967119 -238226545 + HAL1 LINE L1 20 357 -2150 1075 91 0 0 chr1 43967189 43967321 -238226343 + AluSq/x SINE Alu 1 132 -181 1732 118 98 0 chr1 43967323 43967578 -238226086 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr1 43967578 43967603 -238226061 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 456 159 59 141 chr1 43967775 43967801 -238225863 + HAL1 LINE L1 798 825 -1682 1605 144 115 4 chr1 43967801 43968071 -238225593 - AluJb SINE Alu -12 300 1 456 159 59 141 chr1 43968071 43968214 -238225450 + HAL1 LINE L1 825 953 -1554 246 62 0 0 chr1 43968217 43968249 -238225415 + (GGGGA)n Simple_repeat Simple_repeat 5 36 0 2254 114 0 0 chr1 43968404 43968710 -238224954 + AluY SINE Alu 6 311 0 2151 102 7 3 chr1 43968728 43969011 -238224653 + AluSg SINE Alu 1 284 -26 360 233 173 20 chr1 43969028 43969178 -238224486 + HAL1 LINE L1 1289 1461 -1046 275 224 78 35 chr1 43969208 43969324 -238224340 + L1ME1 LINE L1 6046 6166 0 * 860 252 90 11 chr1 43969320 43969427 -238224237 + HAL1 LINE L1 1475 1572 -935 1908 142 3 14 chr1 43969427 43969753 -238223911 + AluSx SINE Alu 4 312 0 860 252 90 11 chr1 43969753 43969923 -238223741 + HAL1 LINE L1 1572 1774 -733 485 210 154 69 chr1 43969934 43970167 -238223497 + HAL1 LINE L1 1832 2084 -423 1872 93 112 7 chr1 43970176 43970454 -238223210 + AluSg1 SINE Alu 1 307 -2 23 33 0 0 chr1 43970455 43970485 -238223179 + AT_rich Low_complexity Low_complexity 1 30 0 956 251 229 10 chr1 43970502 43970904 -238222760 - L2 LINE L2 0 3313 2824 1320 136 5 0 chr1 43971128 43971319 -238222345 + MSTA LTR MaLR 237 428 0 204 271 0 0 chr1 43973860 43973908 -238219756 + CT-rich Low_complexity Low_complexity 1 48 0 679 264 14 46 chr1 43974760 43974904 -238218760 - MIR SINE MIR -2 260 124 1952 142 7 13 chr1 43974904 43975206 -238218458 + AluSx SINE Alu 1 300 -12 679 264 14 46 chr1 43975206 43975277 -238218387 - MIR SINE MIR -138 124 52 246 62 0 0 chr1 43975818 43975850 -238217814 + (A)n Simple_repeat Simple_repeat 1 32 0 375 326 122 15 chr1 43976397 43976593 -238217071 + MIR SINE MIR 20 236 -26 1636 157 44 27 chr1 43976669 43976963 -238216701 + MER47A DNA MER2_type 2 300 -66 2851 13 0 3 chr1 43977465 43977779 -238215885 + AluYb8 SINE Alu 1 313 -5 266 274 41 0 chr1 43977785 43977858 -238215806 + MIR SINE MIR 77 152 -110 494 249 146 12 chr1 43977928 43978093 -238215571 - L2 LINE L2 0 3313 3127 266 222 118 42 chr1 43978115 43978259 -238215405 + L1ME LINE L1 5555 5709 -412 2626 71 0 0 chr1 43978366 43978676 -238214988 + AluY SINE Alu 2 311 0 213 39 0 0 chr1 43980013 43980039 -238213625 + (T)n Simple_repeat Simple_repeat 1 26 0 1793 101 8 0 chr1 43980141 43980378 -238213286 + AluSq SINE Alu 54 292 -21 2091 91 29 4 chr1 43980600 43980921 -238212743 + AluSq SINE Alu 1 328 0 2156 116 3 0 chr1 43980974 43981267 -238212397 + AluSx SINE Alu 5 298 -14 486 294 147 4 chr1 43983047 43983319 -238210345 + L1ME4a LINE L1 5589 5899 -222 768 240 180 77 chr1 43983670 43983969 -238209695 - MARNA DNA Mariner -22 564 201 2100 90 47 17 chr1 43983969 43984268 -238209396 - AluSc SINE Alu 0 309 2 768 240 180 77 chr1 43984268 43984423 -238209241 - MARNA DNA Mariner -385 201 63 320 307 45 0 chr1 43984442 43984530 -238209134 - L2 LINE L2 -14 3299 3208 370 253 120 20 chr1 43984542 43984692 -238208972 - MIR SINE MIR -8 254 90 229 319 22 44 chr1 43984837 43984972 -238208692 - L2 LINE L2 -225 3047 2916 1592 124 0 9 chr1 43985037 43985263 -238208401 + AluSx SINE Alu 1 224 -88 1405 167 31 49 chr1 43985278 43985432 -238208232 - AluJo SINE Alu -30 282 127 2251 90 0 40 chr1 43985432 43985755 -238207909 - AluY SINE Alu -1 310 1 1405 167 31 49 chr1 43985755 43985766 -238207898 - AluJo SINE Alu -185 127 117 185 62 0 31 chr1 43985766 43985798 -238207866 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1405 167 31 49 chr1 43985798 43985918 -238207746 - AluJo SINE Alu -195 117 1 1228 185 0 14 chr1 43987096 43987307 -238206357 - AluJo SINE Alu -104 208 1 1382 156 0 5 chr1 43989416 43989628 -238204036 + AluJb SINE Alu 85 295 -17 199 309 25 25 chr1 43989638 43989719 -238203945 - MIR SINE MIR -95 113 33 1833 188 0 0 chr1 43990070 43990373 -238203291 + AluJo SINE Alu 1 303 -9 195 255 43 0 chr1 43990640 43990687 -238202977 + MIR SINE MIR 41 89 -119 1988 153 3 0 chr1 43990702 43991002 -238202662 - AluJb SINE Alu -11 301 1 269 308 0 0 chr1 43991031 43991135 -238202529 + AluSq/x SINE Alu 1 104 -199 1176 84 0 18 chr1 43993390 43993557 -238200107 - AluSg/x SINE Alu -14 296 133 2361 67 27 0 chr1 43993844 43994141 -238199523 - AluY SINE Alu -6 305 1 21 36 0 0 chr1 43994148 43994176 -238199488 + AT_rich Low_complexity Low_complexity 1 28 0 1043 210 69 7 chr1 43994176 43994452 -238199212 + L1MC5 LINE L1 7637 7929 -32 240 200 25 38 chr1 43994472 43994552 -238199112 + A-rich Low_complexity Low_complexity 2 80 0 1638 152 71 50 chr1 43994591 43994914 -238198750 - MER2 DNA MER2_type 0 345 16 923 221 36 5 chr1 43994939 43995134 -238198530 + MIR SINE MIR 5 205 -57 733 282 29 53 chr1 43995182 43995331 -238198333 + L1ME LINE L1 5290 5441 -721 2365 67 3 13 chr1 43995331 43995629 -238198035 - AluY SINE Alu -13 298 4 749 172 166 7 chr1 43995632 43995777 -238197887 - FAM SINE Alu -7 168 1 733 282 29 53 chr1 43995777 43996002 -238197662 + L1ME LINE L1 5443 5659 -503 1811 182 3 0 chr1 43996165 43996473 -238197191 - AluJo SINE Alu -3 309 1 275 364 158 20 chr1 43997879 43998132 -238195532 + L2 LINE L2 2969 3256 -16 22 35 0 0 chr1 43999194 43999223 -238194441 + AT_rich Low_complexity Low_complexity 1 29 0 2112 141 0 3 chr1 44000070 44000375 -238193289 + AluSx SINE Alu 2 305 -7 596 275 13 13 chr1 44000496 44000645 -238193019 + MIR3 SINE MIR 35 183 -25 2164 117 3 7 chr1 44000759 44001057 -238192607 + AluSx SINE Alu 1 297 -15 1638 164 66 7 chr1 44001163 44001450 -238192214 + AluJb SINE Alu 1 304 -8 771 158 9 0 chr1 44001456 44001570 -238192094 + FLAM_C SINE Alu 1 115 -18 1742 191 47 3 chr1 44001590 44001930 -238191734 - L1M4 LINE L1 -480 5704 5350 1764 186 0 3 chr1 44002099 44002395 -238191269 - AluJo SINE Alu -17 295 1 207 363 52 15 chr1 44002455 44002590 -238191074 + MIR3 SINE MIR 3 142 -66 1847 135 3 46 chr1 44002771 44002959 -238190705 - AluSx SINE Alu 0 312 117 2188 129 0 3 chr1 44002959 44003268 -238190396 - AluSg SINE Alu -2 308 1 2115 125 3 3 chr1 44003269 44003566 -238190098 - AluSx SINE Alu -15 297 1 1847 135 3 46 chr1 44003566 44003701 -238189963 - AluSx SINE Alu -194 118 1 1735 163 37 0 chr1 44003972 44004266 -238189398 - AluSx SINE Alu -6 306 2 781 183 0 0 chr1 44004295 44004410 -238189254 + FLAM_C SINE Alu 2 116 -27 270 81 0 0 chr1 44004425 44004462 -238189202 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 598 307 104 43 chr1 44004603 44005182 -238188482 + L2 LINE L2 1846 2459 -855 2212 101 0 3 chr1 44005197 44005483 -238188181 - AluSq SINE Alu -13 300 16 533 167 24 0 chr1 44005512 44005596 -238188068 - MER63 DNA MER1_type -3 1059 974 1173 124 12 0 chr1 44005596 44005757 -238187907 - AluSg/x SINE Alu -16 294 132 2653 36 3 0 chr1 44005757 44006060 -238187604 - AluY SINE Alu -7 304 1 2051 182 11 5 chr1 44006060 44006440 -238187224 - MER63 DNA MER1_type -84 977 596 2112 101 33 0 chr1 44006440 44006716 -238186948 + AluSc SINE Alu 1 285 -24 657 212 0 53 chr1 44007169 44007301 -238186363 - FRAM SINE Alu -51 125 1 228 262 226 42 chr1 44007328 44007496 -238186168 - L3 LINE CR1 -12 1565 1367 1597 162 7 68 chr1 44007536 44007845 -238185819 - AluJo SINE Alu -21 291 2 279 250 115 68 chr1 44007872 44008020 -238185644 + MIR SINE MIR 39 193 -69 656 256 149 0 chr1 44008042 44008237 -238185427 + MIR SINE MIR 5 228 -34 22 0 0 0 chr1 44009993 44010015 -238183649 + AT_rich Low_complexity Low_complexity 1 22 0 1740 173 13 20 chr1 44012309 44012615 -238181049 - AluSx SINE Alu -8 304 1 551 301 65 11 chr1 44013801 44013987 -238179677 - MIR3 SINE MIR -9 199 4 299 341 81 8 chr1 44014414 44014537 -238179127 + L2 LINE L2 3137 3268 -4 191 316 0 0 chr1 44015177 44015234 -238178430 - MIR SINE MIR -114 148 92 236 267 100 22 chr1 44015246 44015336 -238178328 - L2 LINE L2 -2885 429 333 391 230 81 0 chr1 44015414 44015501 -238178163 - MER81 DNA DNA -19 95 2 228 198 161 0 chr1 44015639 44015720 -238177944 + LTR2B LTR ERV1 1 94 -396 2283 204 90 39 chr1 44015781 44016106 -238177558 + L1ME1 LINE L1 5532 5839 -327 2492 68 0 0 chr1 44016106 44016401 -238177263 - AluY SINE Alu -16 295 1 2283 204 90 39 chr1 44016401 44016664 -238177000 + L1ME1 LINE L1 5839 6150 -16 1951 124 50 0 chr1 44018078 44018361 -238175303 - AluSq SINE Alu -16 297 1 2254 102 20 0 chr1 44018411 44018716 -238174948 - AluSp SINE Alu -2 311 1 907 230 60 102 chr1 44018752 44019152 -238174512 - L1MC5 LINE L1 -811 6997 6581 2207 112 26 0 chr1 44019152 44019457 -238174207 - AluSp SINE Alu 0 313 1 907 230 60 102 chr1 44019457 44019522 -238174142 - L1MC5 LINE L1 -1227 6581 6602 180 0 0 0 chr1 44019522 44019542 -238174122 + (CAA)n Simple_repeat Simple_repeat 2 21 0 907 230 60 102 chr1 44019542 44019688 -238173976 - L1MC5 LINE L1 -1205 6603 6452 267 197 129 88 chr1 44019843 44020036 -238173628 - L1MC4a LINE L1 -1571 6237 6037 3138 202 70 15 chr1 44020109 44020832 -238172832 - L1MB7 LINE L1 -2 6182 5420 2130 118 20 7 chr1 44020919 44021223 -238172441 + AluSx SINE Alu 1 308 -4 407 267 69 8 chr1 44021358 44021489 -238172175 - MIR SINE MIR -53 209 71 21 36 0 0 chr1 44021554 44021582 -238172082 + AT_rich Low_complexity Low_complexity 1 28 0 808 159 0 38 chr1 44021751 44021883 -238171781 - FLAM_C SINE Alu -6 127 1 216 87 0 65 chr1 44021890 44021936 -238171728 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 217 301 43 11 chr1 44022075 44022168 -238171496 - L3 LINE CR1 -104 1473 1378 180 0 0 0 chr1 44022251 44022271 -238171393 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2214 115 0 0 chr1 44022276 44022563 -238171101 - AluSx SINE Alu -25 287 1 208 259 138 26 chr1 44022668 44022784 -238170880 - MIR SINE MIR -6 256 128 483 226 130 138 chr1 44022864 44023176 -238170488 - L1ME4a LINE L1 -2 6119 5806 2893 3 0 0 chr1 44023176 44023483 -238170181 - AluYb8 SINE Alu -11 307 1 1003 203 0 0 chr1 44023488 44023651 -238170013 - FRAM SINE Alu -2 164 2 483 226 130 138 chr1 44023651 44024070 -238169594 - L1ME4a LINE L1 -319 5802 5388 842 264 183 17 chr1 44024517 44024866 -238168798 - L2 LINE L2 -48 3265 2859 1818 164 4 4 chr1 44028028 44028309 -238165355 - AluJb SINE Alu -31 281 1 331 280 114 38 chr1 44028365 44028456 -238165208 - MIR3 SINE MIR -39 169 64 1821 150 7 0 chr1 44028456 44028736 -238164928 - AluSg SINE Alu -6 304 23 331 280 114 38 chr1 44028736 44028776 -238164888 - MIR3 SINE MIR -144 64 28 1700 114 0 0 chr1 44028944 44029172 -238164492 - AluSg/x SINE Alu 0 310 83 795 195 0 0 chr1 44029673 44029801 -238163863 - FLAM_A SINE Alu -5 128 1 21 0 0 0 chr1 44030008 44030029 -238163635 + AT_rich Low_complexity Low_complexity 1 21 0 6780 124 45 21 chr1 44030029 44030213 -238163451 - L1MA2 LINE L1 -6 6298 6120 2387 85 0 0 chr1 44030213 44030508 -238163156 + AluY SINE Alu 2 296 -15 1686 167 30 10 chr1 44030513 44030812 -238162852 + AluJb SINE Alu 1 305 -7 6780 124 45 21 chr1 44030812 44031702 -238161962 - L1MA2 LINE L1 -187 6117 5160 2315 79 33 3 chr1 44031702 44032005 -238161659 - AluSx SINE Alu 0 312 1 6780 124 45 21 chr1 44032005 44032604 -238161060 - L1MA2 LINE L1 -1144 5160 4577 2359 88 0 19 chr1 44032669 44032976 -238160688 - AluSq SINE Alu -12 301 1 2298 84 0 17 chr1 44032981 44033277 -238160387 - AluSx SINE Alu -20 292 2 324 305 133 20 chr1 44034203 44034354 -238159310 - MIR SINE MIR -75 187 20 539 229 167 0 chr1 44035875 44036019 -238157645 + MIR SINE MIR 2 169 -93 889 220 152 67 chr1 44038008 44038463 -238155201 - MLT1H LTR MaLR 0 549 12 2203 128 13 0 chr1 44038504 44038810 -238154854 + AluSx SINE Alu 1 310 -2 606 106 35 9 chr1 44038810 44038923 -238154741 + GA-rich Low_complexity Low_complexity 1 116 0 2381 58 0 14 chr1 44038989 44039283 -238154381 - AluY SINE Alu -21 290 1 23 33 0 0 chr1 44040681 44040711 -238152953 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr1 44041793 44041821 -238151843 + AT_rich Low_complexity Low_complexity 1 28 0 898 165 88 6 chr1 44042953 44043123 -238150541 + AluSc SINE Alu 109 292 -17 2334 70 0 20 chr1 44043198 44043521 -238150143 - AluY SINE Alu 0 311 1 2212 112 0 0 chr1 44043523 44043819 -238149845 - AluY SINE Alu -14 297 2 234 321 73 9 chr1 44043849 44043958 -238149706 + L2 LINE L2 2723 2838 -476 267 212 9 159 chr1 44044048 44044077 -238149587 + L2 LINE L2 3177 3209 -63 1783 170 0 7 chr1 44044077 44044413 -238149251 - AluJb SINE Alu 0 334 1 267 212 9 159 chr1 44044413 44044494 -238149170 + L2 LINE L2 3209 3272 0 1520 113 5 14 chr1 44045466 44045679 -238147985 + AluSg/x SINE Alu 82 292 -18 2058 91 0 78 chr1 44045684 44046004 -238147660 + AluSx SINE Alu 1 295 -17 1097 32 0 0 chr1 44046134 44046259 -238147405 - L1PA5 LINE L1 0 6154 6030 781 11 0 0 chr1 44046689 44046780 -238146884 - L1PA5 LINE L1 -147 6007 5917 2429 87 3 0 chr1 44047061 44047371 -238146293 - AluY SINE Alu 0 311 1 612 274 37 12 chr1 44047470 44047634 -238146030 - MIR3 SINE MIR -6 202 35 2365 108 0 0 chr1 44047755 44048061 -238145603 - AluSx SINE Alu -6 306 1 2290 95 3 3 chr1 44048641 44048936 -238144728 + AluSp SINE Alu 1 295 -18 692 190 58 0 chr1 44049388 44049509 -238144155 + FLAM_C SINE Alu 1 128 -5 208 121 0 0 chr1 44049513 44049546 -238144118 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 2147 100 4 0 chr1 44050119 44050440 -238143224 - AluSx SINE Alu 0 322 1 396 283 19 47 chr1 44051728 44051923 -238141741 + MIR SINE MIR 1 187 -59 394 378 110 20 chr1 44051982 44052381 -238141283 - L2 LINE L2 -12 3260 2826 1997 129 24 3 chr1 44052485 44052779 -238140885 + AluSg SINE Alu 1 300 -10 254 332 125 55 chr1 44052832 44053121 -238140543 - L2 LINE L2 -76 3196 2888 735 239 58 34 chr1 44053192 44053397 -238140267 + MIR SINE MIR 16 225 -37 1535 196 7 11 chr1 44053402 44053683 -238139981 + AluJo SINE Alu 1 280 -32 212 376 85 16 chr1 44053765 44053954 -238139710 - L2 LINE L2 -683 2631 2430 698 117 131 15 chr1 44054005 44054142 -238139522 + SVA Other Other 109 261 -1125 1734 104 0 0 chr1 44054260 44054482 -238139182 + AluSq SINE Alu 80 301 -12 228 271 17 0 chr1 44054482 44054541 -238139123 + (CATATA)n Simple_repeat Simple_repeat 1 60 0 1092 225 79 21 chr1 44054542 44054624 -238139040 - L1MC4 LINE L1 -1239 6569 6493 360 0 0 0 chr1 44054624 44054664 -238139000 + (CA)n Simple_repeat Simple_repeat 1 40 0 1092 225 79 21 chr1 44054664 44055499 -238138165 - L1MC4 LINE L1 -1315 6493 5711 368 301 19 45 chr1 44056884 44057040 -238136624 - MIR SINE MIR -64 198 47 206 196 65 0 chr1 44058837 44058883 -238134781 + L3 LINE CR1 1523 1571 -6 27 62 0 0 chr1 44058910 44058958 -238134706 + AT_rich Low_complexity Low_complexity 1 48 0 762 259 22 49 chr1 44059085 44059305 -238134359 + MIR SINE MIR 4 217 -45 513 143 0 0 chr1 44059305 44059382 -238134282 + MER5A DNA MER1_type 2 78 -111 736 214 8 0 chr1 44059382 44059513 -238134151 + FLAM_C SINE Alu 2 133 -10 1427 296 50 31 chr1 44060055 44060448 -238133216 + L2 LINE L2 2305 2712 -602 687 206 28 50 chr1 44060448 44060628 -238133036 - MER104 DNA MER2_type -4 176 1 1427 296 50 31 chr1 44060628 44060754 -238132910 + L2 LINE L2 2712 2834 -480 1691 184 17 17 chr1 44060783 44061082 -238132582 + AluJb SINE Alu 1 299 -13 470 299 26 19 chr1 44061093 44061247 -238132417 + L2 LINE L2 3154 3308 -5 381 330 141 0 chr1 44061292 44061477 -238132187 + MIR SINE MIR 49 259 -3 230 343 81 30 chr1 44061581 44061779 -238131885 - L2 LINE L2 -341 2973 2766 494 179 147 0 chr1 44061779 44061874 -238131790 + MER5A DNA MER1_type 4 112 -77 257 311 29 91 chr1 44061942 44062151 -238131513 - L2 LINE L2 -565 2749 2554 470 234 114 44 chr1 44064104 44064262 -238129402 + MIR SINE MIR 22 190 -72 2010 102 57 7 chr1 44064976 44065259 -238128405 - AluSg SINE Alu -13 297 1 324 120 0 0 chr1 44065324 44065374 -238128290 + (T)n Simple_repeat Simple_repeat 1 50 0 1417 169 4 8 chr1 44067299 44067535 -238126129 + AluJb SINE Alu 59 293 -19 2004 139 3 3 chr1 44067700 44067995 -238125669 + AluSx SINE Alu 1 295 -17 2252 96 3 0 chr1 44067995 44068287 -238125377 + AluY SINE Alu 1 293 -18 2485 71 0 0 chr1 44068435 44068732 -238124932 - AluY SINE Alu -14 297 1 207 0 0 0 chr1 44069756 44069779 -238123885 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1608 150 21 28 chr1 44071560 44071846 -238121818 - AluJo SINE Alu -26 286 3 550 303 47 103 chr1 44071876 44072343 -238121321 - L2 LINE L2 -51 3221 2782 1508 99 19 28 chr1 44073070 44073282 -238120382 - AluSg/x SINE Alu -18 292 83 2207 131 0 3 chr1 44073495 44073801 -238119863 - AluSx SINE Alu -7 305 1 1531 153 0 8 chr1 44074436 44074678 -238118986 - AluSx SINE Alu -17 295 56 807 312 149 54 chr1 44075159 44076247 -238117417 + L2 LINE L2 1856 3047 -225 1865 150 22 0 chr1 44076297 44076593 -238117071 - AluSx SINE Alu 0 312 20 195 255 85 0 chr1 44076784 44076831 -238116833 - L2 LINE L2 0 3272 3222 658 182 318 42 chr1 44077357 44077374 -238116290 - AluJo SINE Alu 0 312 301 2510 69 3 0 chr1 44077374 44077677 -238115987 - AluSc SINE Alu -5 304 1 658 182 318 42 chr1 44077677 44077873 -238115791 - AluJo SINE Alu -11 301 40 2223 112 0 3 chr1 44078290 44078584 -238115080 - AluSc SINE Alu -16 293 1 345 301 34 29 chr1 44078680 44078855 -238114809 + MIR SINE MIR 42 216 -46 181 295 16 0 chr1 44079066 44079127 -238114537 + L3 LINE CR1 771 832 -745 182 257 203 14 chr1 44081272 44081346 -238112318 - L2 LINE L2 -39 3274 3187 302 95 0 0 chr1 44081559 44081601 -238112063 + L1MA8 LINE L1 6071 6112 -179 2401 65 0 52 chr1 44081602 44081927 -238111737 + AluY SINE Alu 1 308 -3 229 65 0 0 chr1 44081928 44081974 -238111690 - LTR66 LTR ERVL -171 439 394 216 200 0 0 chr1 44081974 44082019 -238111645 + (CA)n Simple_repeat Simple_repeat 2 46 0 831 103 0 0 chr1 44082020 44082136 -238111528 + L1MA8 LINE L1 6100 6215 -76 741 196 0 0 chr1 44082470 44082582 -238111082 + FLAM_C SINE Alu 3 114 -29 207 0 0 0 chr1 44082585 44082608 -238111056 + (TAA)n Simple_repeat Simple_repeat 3 25 0 36 0 0 0 chr1 44082608 44082644 -238111020 + AT_rich Low_complexity Low_complexity 1 36 0 223 315 90 18 chr1 44083646 44083757 -238109907 - MIR SINE MIR -6 256 138 255 275 28 73 chr1 44083757 44083866 -238109798 - MLT1I LTR MaLR -62 347 244 515 270 27 40 chr1 44083916 44084064 -238109600 - MLT1I LTR MaLR -263 146 1 431 297 83 44 chr1 44084064 44084293 -238109371 - L1ME LINE L1 -512 5650 5413 341 266 11 0 chr1 44084291 44084385 -238109279 - L1MC4 LINE L1 0 8042 7948 * 4166 257 105 49 chr1 44084426 44085506 -238108158 - L1MC4a LINE L1 -744 5402 4384 2156 110 9 35 chr1 44085506 44085825 -238107839 - AluSq SINE Alu -2 311 1 4166 257 105 49 chr1 44085825 44086409 -238107255 - L1MC4a LINE L1 -1762 4384 3834 2669 27 0 0 chr1 44086409 44086705 -238106959 - AluY SINE Alu -15 296 1 4166 257 105 49 chr1 44086705 44086945 -238106719 - L1MC4a LINE L1 -2312 3834 3609 1265 126 40 89 chr1 44086945 44086993 -238106671 + MER46A DNA MER2_type 2 51 -2680 2287 95 3 3 chr1 44086993 44087289 -238106375 - AluY SINE Alu -15 296 1 1265 126 40 89 chr1 44087289 44087487 -238106177 + MER46A DNA MER2_type 51 236 0 4166 257 105 49 chr1 44087487 44087582 -238106082 - L1MC4a LINE L1 -2537 3609 4804 2359 108 0 0 chr1 44087582 44087889 -238105775 - AluSx SINE Alu -5 307 1 4166 257 105 49 chr1 44087889 44088132 -238105532 - L1MC4a LINE L1 -1341 4805 4577 1073 139 12 24 chr1 44088245 44088410 -238105254 - FRAM SINE Alu 0 166 4 784 124 0 0 chr1 44088610 44088715 -238104949 - AluSx SINE Alu -14 296 192 1054 128 0 0 chr1 44088716 44088857 -238104807 - AluSx SINE Alu -172 141 1 2210 125 3 0 chr1 44088857 44089160 -238104504 - AluSx SINE Alu -8 304 1 247 247 99 0 chr1 44089174 44089255 -238104409 - L1MC4a LINE L1 -1924 4222 4134 31 26 0 0 chr1 44089256 44089294 -238104370 + AT_rich Low_complexity Low_complexity 1 38 0 825 136 0 0 chr1 44089294 44089412 -238104252 - AluJb SINE Alu -194 118 1 326 258 55 47 chr1 44089444 44089572 -238104092 - MIR SINE MIR -102 160 32 1224 128 0 21 chr1 44089720 44089907 -238103757 + AluSq SINE Alu 124 306 -7 2187 129 0 0 chr1 44090413 44090715 -238102949 - AluSx SINE Alu -10 302 1 842 152 8 15 chr1 44090917 44091049 -238102615 - FLAM_C SINE Alu 0 133 3 186 306 0 0 chr1 44091495 44091544 -238102120 + MIR SINE MIR 87 135 -73 350 220 68 51 chr1 44092400 44092518 -238101146 - L3 LINE CR1 -11 1566 1447 513 237 0 103 chr1 44092691 44092847 -238100817 - MER119 DNA MER1_type 0 583 444 308 231 108 0 chr1 44092834 44092899 -238100765 - MER119 DNA MER1_type -449 134 63 * 2269 99 0 10 chr1 44092951 44093254 -238100410 + AluSg1 SINE Alu 1 300 -9 2159 119 0 16 chr1 44093721 44094032 -238099632 - AluSx SINE Alu -6 306 1 338 254 14 0 chr1 44094199 44094270 -238099394 + L2 LINE L2 3242 3313 0 1549 114 8 61 chr1 44094865 44094938 -238098726 + AluSg SINE Alu 62 137 -173 2271 66 45 14 chr1 44094938 44095225 -238098439 + AluY SINE Alu 1 296 -15 1549 114 8 61 chr1 44095225 44095414 -238098250 + AluSg SINE Alu 137 310 0 2225 118 0 0 chr1 44095484 44095781 -238097883 + AluSx SINE Alu 1 297 -15 2273 114 0 0 chr1 44095873 44096180 -238097484 + AluSx SINE Alu 1 307 -5 1084 205 51 28 chr1 44096431 44096646 -238097018 - MER58A DNA MER1_type -3 221 2 2450 60 0 13 chr1 44096743 44097063 -238096601 + AluY SINE Alu 2 311 0 2503 85 0 0 chr1 44097207 44097514 -238096150 - AluY SINE Alu -4 307 1 183 264 33 44 chr1 44098443 44098534 -238095130 - MIR3 SINE MIR -115 93 4 1324 183 95 39 chr1 44098629 44098913 -238094751 - AluJo SINE Alu -12 300 1 2077 118 3 7 chr1 44098921 44099225 -238094439 - AluSx SINE Alu -9 303 1 2305 117 0 0 chr1 44099635 44099935 -238093729 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr1 44102373 44102402 -238091262 + AT_rich Low_complexity Low_complexity 1 29 0 1795 159 3 20 chr1 44102538 44102834 -238090830 + AluJo SINE Alu 1 291 -21 22 0 0 0 chr1 44102957 44102979 -238090685 + AT_rich Low_complexity Low_complexity 1 22 0 2414 65 7 0 chr1 44102979 44103270 -238090394 - AluSp SINE Alu -20 293 1 1505 167 4 34 chr1 44103270 44103533 -238090131 - AluJo SINE Alu -8 304 50 1446 146 13 0 chr1 44103534 44103760 -238089904 + AluJo SINE Alu 73 301 -11 291 232 39 40 chr1 44104092 44104185 -238089479 + MIR SINE MIR 36 127 -81 1876 121 81 0 chr1 44104336 44104609 -238089055 + AluY SINE Alu 1 295 -16 2122 122 7 0 chr1 44104752 44105047 -238088617 + AluSq SINE Alu 1 297 -16 1725 157 103 42 chr1 44105268 44105509 -238088155 - Charlie1b DNA MER1_type -2242 519 294 2432 72 0 0 chr1 44105509 44105802 -238087862 + AluY SINE Alu 1 293 -18 1725 157 103 42 chr1 44105802 44105988 -238087676 - Charlie1b DNA MER1_type -2467 294 66 964 212 31 5 chr1 44106292 44106485 -238087179 - MIR SINE MIR -48 214 17 2130 122 0 0 chr1 44106986 44107281 -238086383 - AluSx SINE Alu -17 295 1 1902 122 0 59 chr1 44108159 44108341 -238085323 - AluJo SINE Alu -11 301 145 2409 90 0 0 chr1 44108341 44108641 -238085023 - AluSg SINE Alu -8 302 3 1902 122 0 59 chr1 44108641 44108778 -238084886 - AluJo SINE Alu -167 145 1 21 0 0 0 chr1 44108823 44108844 -238084820 + AT_rich Low_complexity Low_complexity 1 21 0 212 292 31 31 chr1 44108910 44109006 -238084658 + MIR SINE MIR 161 256 -6 2183 120 13 3 chr1 44110780 44111089 -238082575 - AluJb SINE Alu 0 312 1 2310 114 0 0 chr1 44111265 44111573 -238082091 - AluSx SINE Alu -4 308 1 2525 54 0 13 chr1 44112739 44113037 -238080627 + AluY SINE Alu 1 294 -17 252 0 0 0 chr1 44115110 44115138 -238078526 + (TA)n Simple_repeat Simple_repeat 2 29 0 1570 188 17 10 chr1 44115440 44115738 -238077926 + AluJb SINE Alu 1 300 -12 402 180 30 0 chr1 44115741 44115841 -238077823 + GA-rich Low_complexity Low_complexity 2 104 0 354 23 0 0 chr1 44116153 44116196 -238077468 + (ATTG)n Simple_repeat Simple_repeat 1 43 0 2225 113 0 3 chr1 44116253 44116555 -238077109 + AluSx SINE Alu 1 301 -11 246 94 0 0 chr1 44116946 44116978 -238076686 - MER20 DNA MER1_type -2 217 186 783 150 288 0 chr1 44117033 44117186 -238076478 - MER20 DNA MER1_type -19 200 4 2095 97 66 3 chr1 44117972 44118261 -238075403 + AluSc SINE Alu 1 307 -2 2105 144 19 25 chr1 44119096 44119193 -238074471 - MER47A DNA MER2_type -1957 366 270 2396 85 7 0 chr1 44119193 44119488 -238074176 + AluSq SINE Alu 1 297 -16 2105 144 19 25 chr1 44119488 44119757 -238073907 - MER47A DNA MER2_type -2053 270 2 403 272 41 29 chr1 44119842 44119995 -238073669 - MIR SINE MIR -27 181 23 1931 164 7 3 chr1 44120053 44120352 -238073312 - AluJb SINE Alu -12 300 1 491 197 145 34 chr1 44120354 44120471 -238073193 + MER20 DNA MER1_type 57 186 -33 2408 88 0 7 chr1 44121285 44121590 -238072074 - AluSx SINE Alu -9 303 1 624 282 14 29 chr1 44122087 44122296 -238071368 + MIR SINE MIR 1 206 -56 2032 141 0 7 chr1 44122396 44122709 -238070955 - AluJb SINE Alu 0 312 13 203 271 0 0 chr1 44123005 44123064 -238070600 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2217 112 3 0 chr1 44123843 44124130 -238069534 + AluSx SINE Alu 1 288 -24 193 267 17 17 chr1 44124241 44124301 -238069363 + L2 LINE L2 3018 3077 -195 285 242 15 0 chr1 44124332 44124398 -238069266 + L2 LINE L2 3246 3312 -1 243 306 104 12 chr1 44124385 44124558 -238069106 - L2 LINE L2 -1146 2168 1980 * 200 280 136 51 chr1 44124565 44124952 -238068712 + L2 LINE L2 1811 2237 -1077 2238 96 0 3 chr1 44124952 44125312 -238068352 - AluSx SINE Alu 0 359 1 200 280 136 51 chr1 44125312 44125334 -238068330 + L2 LINE L2 2237 2256 -1058 2150 107 7 0 chr1 44125760 44126099 -238067565 + AluSx SINE Alu 1 341 0 1720 144 82 17 chr1 44126127 44126419 -238067245 + AluSx SINE Alu 2 312 0 1507 204 29 4 chr1 44126419 44126698 -238066966 - AluJo SINE Alu -26 286 1 2006 103 27 20 chr1 44128371 44128672 -238064992 + AluSx SINE Alu 1 303 -9 597 300 143 22 chr1 44128933 44129303 -238064361 - L3 LINE CR1 -2 1575 1161 182 71 0 95 chr1 44130834 44130876 -238062788 + (CCCCCG)n Simple_repeat Simple_repeat 4 41 0 28 29 0 0 chr1 44130924 44130959 -238062705 + GC_rich Low_complexity Low_complexity 1 35 0 416 283 41 21 chr1 44137109 44137239 -238056425 + MIR3 SINE MIR 54 189 -19 2206 54 6 108 chr1 44137239 44137574 -238056090 - AluY SINE Alu -10 301 1 416 283 41 21 chr1 44137574 44137588 -238056076 + MIR3 SINE MIR 189 201 -7 779 169 8 0 chr1 44138279 44138409 -238055255 + FLAM_C SINE Alu 3 133 0 283 181 42 28 chr1 44138537 44138609 -238055055 + MIR3 SINE MIR 111 183 -25 1675 137 21 97 chr1 44139462 44139791 -238053873 - AluYb8 SINE Alu -14 304 1 353 193 121 50 chr1 44139796 44139936 -238053728 - L2 LINE L2 -15 3298 3149 641 291 110 54 chr1 44139964 44140482 -238053182 - L2 LINE L2 -725 2589 2043 2099 139 3 3 chr1 44140494 44140789 -238052875 + AluSx SINE Alu 1 295 -17 1433 143 0 9 chr1 44141285 44141502 -238052162 + MER46A DNA MER2_type 22 236 0 1977 133 30 0 chr1 44141537 44141712 -238051952 - AluSq SINE Alu -4 309 120 396 0 0 0 chr1 44141712 44141756 -238051908 + (TG)n Simple_repeat Simple_repeat 2 45 0 1977 133 30 0 chr1 44141756 44141880 -238051784 - AluSq SINE Alu -193 120 1 805 216 95 0 chr1 44141905 44142095 -238051569 + MER3 DNA MER1_type 2 209 0 2527 70 0 0 chr1 44142778 44143078 -238050586 - AluY SINE Alu -11 300 1 2511 60 0 3 chr1 44143706 44144007 -238049657 + AluY SINE Alu 1 300 -11 769 131 6 50 chr1 44145215 44145267 -238048397 - L1MA9 LINE L1 0 6312 6259 2609 53 0 0 chr1 44145267 44145566 -238048098 + AluY SINE Alu 1 299 -12 769 131 6 50 chr1 44145566 44145673 -238047991 - L1MA9 LINE L1 -53 6259 6160 271 217 0 0 chr1 44147363 44147409 -238046255 - tRNA-Met-e tRNA tRNA -29 46 1 32 43 0 0 chr1 44148019 44148065 -238045599 + AT_rich Low_complexity Low_complexity 1 46 0 209 265 0 0 chr1 44148264 44148313 -238045351 + L2 LINE L2 3215 3263 -9 1649 166 4 11 chr1 44153618 44153889 -238039775 + AluJo SINE Alu 14 282 -30 2260 101 0 0 chr1 44155711 44155998 -238037666 + AluSx SINE Alu 1 287 -25 338 260 100 33 chr1 44156112 44156262 -238037402 - L1ME4a LINE L1 -11 6110 5951 2339 103 0 3 chr1 44159214 44159525 -238034139 - AluSx SINE Alu -2 310 1 2094 112 25 11 chr1 44160423 44160709 -238032955 + AluSx SINE Alu 8 297 -15 2369 97 0 3 chr1 44160714 44161022 -238032642 + AluSx SINE Alu 1 307 -5 2035 126 41 0 chr1 44161525 44161819 -238031845 - AluSx SINE Alu -6 306 1 314 324 72 0 chr1 44161843 44161982 -238031682 - L1ME4a LINE L1 -4 6117 5969 1950 145 23 0 chr1 44161990 44162319 -238031345 - AluJb SINE Alu 0 336 1 203 139 47 0 chr1 44162711 44162754 -238030910 + (TA)n Simple_repeat Simple_repeat 2 46 0 2577 51 0 3 chr1 44165967 44166261 -238027403 + AluY SINE Alu 1 293 -18 26 0 0 0 chr1 44166279 44166305 -238027359 + AT_rich Low_complexity Low_complexity 1 26 0 215 224 61 0 chr1 44167357 44167406 -238026258 - L2 LINE L2 -3 3310 3259 1751 169 14 7 chr1 44167591 44167887 -238025777 + AluJo SINE Alu 1 298 -14 223 340 150 7 chr1 44167918 44168065 -238025599 + L3 LINE CR1 1306 1473 -104 24 100 0 0 chr1 44168169 44168249 -238025415 + AT_rich Low_complexity Low_complexity 1 80 0 21 57 0 0 chr1 44168384 44168419 -238025245 + AT_rich Low_complexity Low_complexity 1 35 0 632 215 64 23 chr1 44171087 44171259 -238022405 - MIR SINE MIR -71 191 13 2563 63 0 0 chr1 44171310 44171610 -238022054 - AluY SINE Alu -10 301 2 1597 166 51 20 chr1 44171611 44171773 -238021891 - AluJo SINE Alu -7 305 128 2139 119 0 13 chr1 44171773 44172075 -238021589 - AluSg SINE Alu -12 298 1 1597 166 51 20 chr1 44172075 44172208 -238021456 - AluJo SINE Alu -184 128 1 285 295 105 0 chr1 44172210 44172305 -238021359 - MIR3 SINE MIR -51 157 53 2648 56 0 0 chr1 44172520 44172824 -238020840 - AluY SINE Alu -7 304 1 239 333 90 0 chr1 44173661 44173772 -238019892 - MIR SINE MIR -105 157 37 900 118 0 29 chr1 44173785 44173921 -238019743 - FLAM_C SINE Alu -1 132 1 879 185 25 163 chr1 44176034 44176310 -238017354 - MER8 DNA MER2_type 0 239 2 1953 130 10 7 chr1 44176432 44176732 -238016932 + AluSx SINE Alu 1 301 -11 1443 243 3 12 chr1 44177081 44177414 -238016250 - MLT1E3 LTR MaLR 0 624 295 571 194 105 8 chr1 44177465 44177589 -238016075 - MLT1E3 LTR MaLR -518 136 1 1609 133 142 47 chr1 44177886 44177965 -238015699 + MER47A DNA MER2_type 20 90 -2233 2209 117 0 0 chr1 44177965 44178256 -238015408 + AluSx SINE Alu 1 291 -21 1609 133 142 47 chr1 44178256 44178493 -238015171 + MER47A DNA MER2_type 90 366 0 511 309 181 41 chr1 44178756 44179605 -238014059 + L2 LINE L2 1914 2881 -433 2509 151 26 10 chr1 44179719 44180137 -238013527 - MSTB LTR MaLR 0 426 2 942 149 43 14 chr1 44182656 44182868 -238010796 + AluJb SINE Alu 1 300 -12 194 323 16 0 chr1 44182885 44182947 -238010717 - L2 LINE L2 -573 2741 2679 2370 100 0 10 chr1 44183273 44183584 -238010080 + AluSx SINE Alu 1 308 -4 1678 189 3 29 chr1 44184188 44184494 -238009170 + AluJb SINE Alu 1 298 -14 2327 80 3 13 chr1 44184969 44185271 -238008393 + AluSp SINE Alu 1 299 -14 2132 103 13 20 chr1 44186391 44186692 -238006972 + AluSx SINE Alu 1 299 -13 202 182 171 23 chr1 44187851 44187939 -238005725 - MIR SINE MIR -64 144 44 2527 66 3 0 chr1 44188850 44189155 -238004509 + AluY SINE Alu 1 306 -5 2036 123 10 3 chr1 44189874 44190167 -238003497 + AluSq SINE Alu 1 295 -18 796 245 80 13 chr1 44191591 44191828 -238001836 - MIR SINE MIR -5 257 5 1529 183 39 25 chr1 44192135 44192419 -238001245 + AluJo SINE Alu 1 288 -24 628 148 148 13 chr1 44193592 44193747 -237999917 - L1MB3 LINE L1 0 6183 6008 220 321 60 12 chr1 44195553 44195637 -237998027 - L2 LINE L2 -58 3214 3127 724 179 0 0 chr1 44195739 44195856 -237997808 + FLAM_C SINE Alu 1 117 -16 2057 136 0 7 chr1 44195874 44196176 -237997488 + AluSg SINE Alu 1 300 -10 2125 132 7 0 chr1 44196181 44196485 -237997179 + AluSx SINE Alu 1 306 -6 310 194 23 0 chr1 44196494 44196569 -237997095 + Alu SINE Alu 243 291 -11 1290 118 6 6 chr1 44197075 44197253 -237996411 + AluJb SINE Alu 122 299 -13 2329 88 0 10 chr1 44198055 44198361 -237995303 + AluSc SINE Alu 1 303 -6 270 203 146 44 chr1 44198361 44198519 -237995145 + L1ME LINE L1 5645 5818 -303 506 120 0 0 chr1 44198576 44198651 -237995013 + AluS SINE Alu 1 75 -238 218 121 0 86 chr1 44198780 44198838 -237994826 + (TA)n Simple_repeat Simple_repeat 2 54 0 416 283 41 21 chr1 44202743 44202873 -237990791 + MIR3 SINE MIR 54 189 -19 2228 51 6 110 chr1 44202873 44203209 -237990455 - AluY SINE Alu -10 301 1 416 283 41 21 chr1 44203209 44203223 -237990441 + MIR3 SINE MIR 189 201 -7 779 169 8 0 chr1 44203914 44204044 -237989620 + FLAM_C SINE Alu 3 133 0 283 181 42 28 chr1 44204172 44204244 -237989420 + MIR3 SINE MIR 111 183 -25 515 154 118 27 chr1 44208146 44208256 -237985408 + MER20 DNA MER1_type 99 218 -1 2533 49 0 40 chr1 44209379 44209703 -237983961 + AluY SINE Alu 1 311 0 295 262 119 0 chr1 44209847 44209931 -237983733 + MER5B DNA MER1_type 62 155 -23 817 152 25 71 chr1 44211738 44211810 -237981854 + MER5A DNA MER1_type 2 76 -113 2613 59 7 0 chr1 44211810 44212116 -237981548 + AluY SINE Alu 1 308 -3 817 152 25 71 chr1 44212116 44212240 -237981424 + MER5A DNA MER1_type 76 189 0 186 167 0 0 chr1 44212916 44212946 -237980718 + MIR SINE MIR 122 151 -111 281 241 22 24 chr1 44214133 44214252 -237979412 + L1ME4a LINE L1 1190 6035 -41 201 310 0 52 chr1 44215300 44215358 -237978306 + L2 LINE L2 3192 3246 -26 1500 169 60 15 chr1 44215445 44215711 -237977953 + AluJo SINE Alu 5 282 -30 1880 137 14 17 chr1 44217219 44217512 -237976152 - AluSx SINE Alu -20 292 1 2133 106 17 7 chr1 44217578 44217880 -237975784 + AluSp SINE Alu 8 312 -1 2106 109 3 33 chr1 44217939 44218243 -237975421 + AluSx SINE Alu 2 296 -16 405 196 0 33 chr1 44218551 44218643 -237975021 - AluS SINE Alu -219 94 6 2523 64 3 10 chr1 44218788 44219101 -237974563 + AluY SINE Alu 1 311 0 1162 301 39 41 chr1 44219115 44219428 -237974236 + LTR16B LTR ERVL 1 314 -150 2396 113 124 27 chr1 44219428 44219464 -237974200 + MER31A LTR ERV1 1 32 -453 2332 108 0 3 chr1 44219464 44219770 -237973894 - AluSx SINE Alu -7 305 1 2396 113 124 27 chr1 44219770 44220175 -237973489 + MER31A LTR ERV1 32 485 0 1162 301 39 41 chr1 44220175 44220326 -237973338 + LTR16B LTR ERVL 314 464 0 2227 107 0 0 chr1 44220377 44220668 -237972996 - AluSc SINE Alu -12 297 7 1832 125 10 74 chr1 44220677 44220852 -237972812 - AluJo SINE Alu -20 292 144 2185 125 0 0 chr1 44220852 44221148 -237972516 + AluSx SINE Alu 1 296 -16 1832 125 10 74 chr1 44221148 44221284 -237972380 - AluJo SINE Alu -168 144 1 2327 64 4 4 chr1 44221580 44221891 -237971773 + AluSc SINE Alu 1 311 0 809 284 87 47 chr1 44222011 44222502 -237971162 + L2 LINE L2 2766 3272 0 217 333 60 18 chr1 44222700 44222868 -237970796 - L2 LINE L2 -1613 1701 1527 226 293 49 0 chr1 44223021 44223103 -237970561 + L2 LINE L2 1936 2021 -1293 439 297 55 8 chr1 44223129 44223257 -237970407 - L2 LINE L2 -5 3267 3134 460 204 129 83 chr1 44223393 44223469 -237970195 + MER5A DNA MER1_type 1 87 -102 2525 73 0 0 chr1 44223469 44223772 -237969892 + AluY SINE Alu 1 303 -8 460 204 129 83 chr1 44223772 44223827 -237969837 + MER5A DNA MER1_type 87 138 -51 721 182 0 0 chr1 44223852 44223962 -237969702 - FLAM_A SINE Alu -32 110 1 322 167 0 0 chr1 44223962 44224016 -237969648 + MER5A DNA MER1_type 125 178 -11 256 287 199 6 chr1 44224038 44224219 -237969445 + L2 LINE L2 2174 2389 -925 349 330 165 22 chr1 44224303 44224661 -237969003 + L2 LINE L2 2867 3275 -38 925 126 28 7 chr1 44224766 44224909 -237968755 - AluJo SINE Alu -166 146 1 2330 102 7 0 chr1 44224937 44225231 -237968433 + AluSc SINE Alu 1 296 -13 398 197 159 8 chr1 44225289 44225421 -237968243 - L2 LINE L2 -720 2594 2443 1024 87 14 7 chr1 44225828 44225966 -237967698 - AluSp/q SINE Alu -13 300 162 230 279 35 47 chr1 44226012 44226098 -237967566 - L2 LINE L2 -1 3312 3228 1781 58 27 0 chr1 44226433 44226658 -237967006 + AluY SINE Alu 76 306 -5 1363 183 102 3 chr1 44226658 44226937 -237966727 + MSTD LTR MaLR 90 396 0 239 204 23 0 chr1 44226937 44226981 -237966683 - MIR SINE MIR -8 254 210 2175 101 4 0 chr1 44227283 44227585 -237966079 - AluSg SINE Alu 0 303 1 187 170 57 38 chr1 44227610 44227663 -237966001 - L2 LINE L2 -213 3059 3006 811 156 39 0 chr1 44227673 44227801 -237965863 - FLAM_C SINE Alu -10 133 1 223 226 66 16 chr1 44227868 44227942 -237965722 + MIR SINE MIR 69 134 -74 199 286 63 0 chr1 44228244 44228307 -237965357 - L2 LINE L2 -27 3286 3220 469 157 0 12 chr1 44228366 44228449 -237965215 + AluJo SINE Alu 60 141 -171 814 93 51 0 chr1 44228449 44228567 -237965097 + AluSp SINE Alu 1 124 -189 2394 96 0 0 chr1 44228827 44229128 -237964536 - AluSc SINE Alu -8 301 1 2250 109 3 0 chr1 44229128 44229430 -237964234 - AluSx SINE Alu -8 304 1 1476 122 169 156 chr1 44229434 44229908 -237963756 + LTR12 LTR ERV1 1 480 -234 316 286 90 16 chr1 44229973 44230162 -237963502 - L1M4 LINE L1 -1837 4309 4107 350 294 109 17 chr1 44230200 44230605 -237963059 - L1M4 LINE L1 -2098 4048 3607 1284 207 150 63 chr1 44230637 44230649 -237963015 - MLT2B1 LTR ERVL 0 520 510 1983 146 3 0 chr1 44230649 44230944 -237962720 + AluSx SINE Alu 1 296 -16 1284 207 150 63 chr1 44230944 44230982 -237962682 - MLT2B1 LTR ERVL -10 510 477 2335 104 0 0 chr1 44230982 44231289 -237962375 - AluSg SINE Alu -3 307 1 1284 207 150 63 chr1 44231289 44231711 -237961953 - MLT2B1 LTR ERVL -43 477 6 2597 11 0 0 chr1 44232141 44232420 -237961244 + AluYa5 SINE Alu 21 299 -12 2287 113 0 3 chr1 44232447 44232758 -237960906 + AluSx SINE Alu 3 312 0 2454 81 0 7 chr1 44232821 44233130 -237960534 + AluY SINE Alu 1 307 -4 1888 154 6 25 chr1 44233147 44233465 -237960199 + AluJb SINE Alu 1 312 0 181 354 12 24 chr1 44233467 44233549 -237960115 - MIR SINE MIR -161 101 21 2424 73 0 3 chr1 44233602 44233904 -237959760 + AluY SINE Alu 1 301 -10 685 285 105 4 chr1 44233922 44234114 -237959550 + MIR SINE MIR 2 222 -40 2376 70 3 3 chr1 44234114 44234412 -237959252 + AluY SINE Alu 1 298 -13 685 285 105 4 chr1 44234412 44234447 -237959217 + MIR SINE MIR 222 252 -10 659 321 64 52 chr1 44234460 44234883 -237958781 - L2 LINE L2 -2 3311 2884 1766 155 93 21 chr1 44234883 44235269 -237958395 + MLT2C2 LTR ERVL 1 414 -50 540 312 103 26 chr1 44235290 44235899 -237957765 - L2 LINE L2 -425 2889 2234 5090 144 48 88 chr1 44236327 44237510 -237956154 - pTR5 LTR ERV1 -1 2437 136 2403 67 3 0 chr1 44237957 44238291 -237955373 - AluY SINE Alu 0 311 1 180 292 46 62 chr1 44238491 44238535 -237955129 + L2 LINE L2 2730 2773 -541 2097 117 7 20 chr1 44238535 44238835 -237954829 - AluSq SINE Alu -11 302 7 180 292 46 62 chr1 44238835 44238920 -237954744 + L2 LINE L2 2773 2857 -457 182 284 148 0 chr1 44239046 44239127 -237954537 + L2 LINE L2 3143 3235 -37 190 205 26 0 chr1 44239411 44239450 -237954214 + MIR SINE MIR 2 41 -221 1410 181 19 27 chr1 44239507 44239767 -237953897 + AluJo SINE Alu 47 304 -8 351 280 120 67 chr1 44240106 44240331 -237953333 + L2 LINE L2 2550 2786 -528 225 170 0 0 chr1 44240462 44240515 -237953149 - MER113 DNA MER1_type? -406 115 63 424 269 172 31 chr1 44240583 44240966 -237952698 + L2 LINE L2 2852 3288 -25 360 203 0 0 chr1 44241101 44241165 -237952499 + MER45 DNA AcHobo 1518 1581 0 309 248 145 8 chr1 44241542 44241659 -237952005 - L1ME4a LINE L1 -40 6081 5949 1701 154 52 67 chr1 44241800 44241971 -237951693 + L1MB7 LINE L1 5696 5868 -316 2145 133 0 0 chr1 44241971 44242273 -237951391 - AluJb SINE Alu -6 306 5 1701 154 52 67 chr1 44242273 44242504 -237951160 + L1MB7 LINE L1 5868 6092 -92 316 226 10 29 chr1 44242520 44242622 -237951042 - L1M3 LINE L1 -338 5830 5731 255 152 0 0 chr1 44242636 44242682 -237950982 + L1MB4 LINE L1 6109 6154 -26 1057 224 30 0 chr1 44242687 44242950 -237950714 - L1MB2 LINE L1 -16 6155 5885 2412 82 0 54 chr1 44242950 44243281 -237950383 - AluSq SINE Alu 0 313 1 1260 177 83 0 chr1 44243282 44243547 -237950117 + L1MB5 LINE L1 5850 6136 -38 3402 176 21 40 chr1 44243572 44244298 -237949366 - L1MB2 LINE L1 -16 6155 5444 2212 114 13 0 chr1 44244459 44244765 -237948899 - AluSx SINE Alu -2 310 1 198 131 66 33 chr1 44244810 44244871 -237948793 + CT-rich Low_complexity Low_complexity 3 65 0 2209 110 0 0 chr1 44244906 44245206 -237948458 - AluSg SINE Alu -10 300 1 318 314 16 21 chr1 44245209 44245400 -237948264 - L1M4 LINE L1 -1479 4667 4478 * 1261 138 75 109 chr1 44245389 44245709 -237947955 - L1MC1 LINE L1 -12 6321 6013 531 125 0 0 chr1 44245712 44245784 -237947880 + AluSx SINE Alu 2 73 -239 1766 196 114 65 chr1 44245784 44245893 -237947771 - LTR12 LTR ERV1 -133 581 479 2096 71 14 7 chr1 44245893 44246173 -237947491 + AluY SINE Alu 1 282 -29 1766 196 114 65 chr1 44246173 44246210 -237947454 - LTR12 LTR ERV1 -235 479 445 450 0 0 0 chr1 44246210 44246260 -237947404 + (TA)n Simple_repeat Simple_repeat 2 51 0 1766 196 114 65 chr1 44246260 44246662 -237947002 - LTR12 LTR ERV1 -269 445 5 1249 158 0 0 chr1 44246662 44246846 -237946818 + AluSx SINE Alu 65 248 -64 243 0 0 0 chr1 44246846 44246873 -237946791 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 840 142 0 0 chr1 44246895 44247036 -237946628 - L1MC1 LINE L1 -314 6019 5879 367 250 36 0 chr1 44247168 44247252 -237946412 + L1MC4 LINE L1 6617 6703 -1339 * 371 308 0 11 chr1 44247204 44247295 -237946369 - L1MC4 LINE L1 -1339 6703 6614 329 250 0 100 chr1 44247222 44247322 -237946342 + L1MC4 LINE L1 6614 6703 -1339 * 261 0 0 0 chr1 44247322 44247351 -237946313 + (CA)n Simple_repeat Simple_repeat 2 30 0 1846 182 7 0 chr1 44247417 44247719 -237945945 - AluJb SINE Alu -8 304 1 332 194 204 0 chr1 44247747 44247845 -237945819 - L2 LINE L2 -1404 1910 1793 212 275 229 18 chr1 44247889 44247998 -237945666 + MIR3 SINE MIR 15 146 -62 2401 102 0 0 chr1 44248196 44248499 -237945165 - AluSx SINE Alu -9 303 1 339 259 155 36 chr1 44248573 44248762 -237944902 - MIR3 SINE MIR 0 208 3 1849 134 9 64 chr1 44250526 44250855 -237942809 + AluJo SINE Alu 1 311 -1 219 36 0 0 chr1 44252703 44252731 -237940933 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1607 105 18 0 chr1 44252793 44253012 -237940652 + AluSg/x SINE Alu 81 303 -7 1839 124 102 4 chr1 44253027 44253302 -237940362 + AluJb SINE Alu 1 302 -10 195 306 0 47 chr1 44253450 44253535 -237940129 - L2 LINE L2 -2 3311 3231 521 257 40 107 chr1 44253545 44253798 -237939866 - L2 LINE L2 -253 3060 2825 2440 79 0 7 chr1 44254057 44254360 -237939304 + AluY SINE Alu 1 301 -10 282 295 189 0 chr1 44255548 44255643 -237938021 - MIR3 SINE MIR -14 194 82 22 0 0 0 chr1 44256381 44256403 -237937261 + AT_rich Low_complexity Low_complexity 1 22 0 1783 190 3 0 chr1 44257352 44257647 -237936017 + AluJb SINE Alu 1 296 -16 473 318 29 29 chr1 44257800 44257970 -237935694 - MIR3 SINE MIR -9 199 30 1140 158 11 0 chr1 44258485 44258662 -237935002 - AluSg/x SINE Alu 0 310 132 2320 111 7 0 chr1 44258759 44259065 -237934599 + AluSq SINE Alu 1 308 -5 468 259 95 7 chr1 44259150 44259297 -237934367 - MIR SINE MIR 0 262 103 511 277 90 11 chr1 44260617 44260805 -237932859 + MIR SINE MIR 60 262 0 280 154 19 0 chr1 44260821 44260873 -237932791 + L2 LINE L2 2925 2977 -336 28 48 0 0 chr1 44261716 44261758 -237931906 + GC_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr1 44262234 44262271 -237931393 + GC_rich Low_complexity Low_complexity 1 37 0 33 66 0 0 chr1 44262343 44262404 -237931260 + GC_rich Low_complexity Low_complexity 1 61 0 191 280 140 0 chr1 44263048 44263141 -237930523 + L2 LINE L2 3160 3265 -7 457 294 50 7 chr1 44263464 44263633 -237930031 - MIR SINE MIR -62 146 24 231 275 63 0 chr1 44264176 44264268 -237929396 + MIR SINE MIR 81 153 -55 246 62 0 0 chr1 44264487 44264519 -237929145 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1980 152 0 13 chr1 44264528 44264844 -237928820 - AluJo SINE Alu 0 312 1 187 231 0 0 chr1 44264918 44264957 -237928707 - MIR SINE MIR -89 119 81 410 300 56 28 chr1 44265694 44265874 -237927790 + MIR3 SINE MIR 20 204 -4 232 317 50 0 chr1 44266207 44266308 -237927356 + MIR SINE MIR 19 124 -84 576 211 35 14 chr1 44266353 44266495 -237927169 - L2 LINE L2 0 3313 3169 402 316 28 77 chr1 44266564 44266760 -237926904 + MIR SINE MIR 8 199 -62 257 246 15 0 chr1 44266835 44266900 -237926764 - MIR SINE MIR -67 141 76 721 162 138 32 chr1 44267132 44267385 -237926279 - L1ME2 LINE L1 -150 6014 5735 303 364 33 0 chr1 44267429 44267550 -237926114 + MIR SINE MIR 50 174 -88 210 280 215 0 chr1 44268275 44268382 -237925282 + MIR3 SINE MIR 59 188 -20 439 266 156 12 chr1 44270235 44270408 -237923256 + L2 LINE L2 2808 3005 -308 1190 193 9 18 chr1 44270483 44270701 -237922963 + MER20 DNA MER1_type 1 216 -3 1562 189 50 101 chr1 44270767 44270841 -237922823 - MSTB1 LTR MaLR 0 432 356 2200 109 0 3 chr1 44270841 44271143 -237922521 - AluSx SINE Alu -11 301 1 1562 189 50 101 chr1 44271143 44271523 -237922141 - MSTB1 LTR MaLR -76 356 1 845 192 86 50 chr1 44271550 44271748 -237921916 - AluJb SINE Alu -6 306 102 273 167 0 0 chr1 44271766 44271808 -237921856 - AluSg/x SINE Alu -47 255 214 801 188 7 0 chr1 44271808 44271952 -237921712 - AluJo SINE Alu -167 145 1 399 248 76 9 chr1 44271960 44272065 -237921599 - L1MC/D LINE L1 -2167 5641 5530 2277 98 7 0 chr1 44272147 44272452 -237921212 + AluSg SINE Alu 1 307 -3 2071 200 70 14 chr1 44272459 44272669 -237920995 + L1MD3 LINE L1 6562 6759 -1236 183 80 0 0 chr1 44272669 44272694 -237920970 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2071 200 70 14 chr1 44272694 44272952 -237920712 + L1MD3 LINE L1 6759 7068 -927 2033 129 3 19 chr1 44272952 44273263 -237920401 + AluSx SINE Alu 1 306 -6 2071 200 70 14 chr1 44273263 44273348 -237920316 + L1MD3 LINE L1 7068 7147 -848 1012 157 74 60 chr1 44273348 44273565 -237920099 + AluJb SINE Alu 85 304 -8 1276 170 112 47 chr1 44273572 44273695 -237919969 + AluJo SINE Alu 13 127 -185 2108 134 3 0 chr1 44273695 44274002 -237919662 - AluSc SINE Alu -1 308 1 1276 170 112 47 chr1 44274002 44274154 -237919510 + AluJo SINE Alu 127 306 -6 743 199 24 6 chr1 44274154 44274320 -237919344 + L1MC4a LINE L1 7199 7367 -441 1462 169 30 97 chr1 44274323 44274726 -237918938 - LTR5 LTR ERVK 0 969 594 434 97 0 0 chr1 44274726 44274788 -237918876 + tRNA-Lys-AAG tRNA tRNA 15 76 0 1444 162 40 89 chr1 44274790 44275185 -237918479 - LTR5 LTR ERVK 0 969 594 434 97 0 0 chr1 44275185 44275247 -237918417 + tRNA-Lys-AAG tRNA tRNA 15 76 0 4819 167 28 40 chr1 44275249 44276230 -237917434 - LTR5 LTR ERVK 0 969 1 1385 193 34 80 chr1 44276230 44276348 -237917316 + L1MD3 LINE L1 7541 7663 -332 1918 155 3 16 chr1 44276348 44276658 -237917006 + AluJo SINE Alu 1 306 -6 1385 193 34 80 chr1 44276658 44276853 -237916811 + L1MD3 LINE L1 7663 7827 -168 2330 90 0 0 chr1 44276853 44277154 -237916510 - AluSg1 SINE Alu -4 305 5 1385 193 34 80 chr1 44277154 44277316 -237916348 + L1MD3 LINE L1 7827 7995 0 354 371 17 22 chr1 44277330 44277562 -237916102 + L2 LINE L2 3083 3313 0 253 284 78 17 chr1 44278487 44278603 -237915061 - MIR SINE MIR -121 141 19 2466 71 0 0 chr1 44278622 44278933 -237914731 + AluY SINE Alu 1 311 0 183 292 77 0 chr1 44279095 44279160 -237914504 - MIR SINE MIR -87 175 106 181 343 76 59 chr1 44280886 44281175 -237912489 + L2 LINE L2 2923 3216 -56 304 203 152 0 chr1 44282178 44282257 -237911407 + MIR SINE MIR 48 138 -70 250 357 47 0 chr1 44282807 44282936 -237910728 + MIR SINE MIR 13 147 -115 230 261 109 0 chr1 44283185 44283277 -237910387 + MLT1F1 LTR MaLR 7 108 -459 1555 266 27 10 chr1 44283308 44283797 -237909867 + L1MC3 LINE L1 7225 7721 -64 809 144 0 0 chr1 44283801 44283919 -237909745 - FRAM SINE Alu -17 159 42 1374 310 143 20 chr1 44283970 44285042 -237908622 - L2 LINE L2 -597 2717 1515 21 36 0 0 chr1 44286040 44286068 -237907596 + GC_rich Low_complexity Low_complexity 1 28 0 1637 172 16 41 chr1 44287627 44287947 -237905717 - AluJb SINE Alu 0 312 1 1724 158 30 30 chr1 44287969 44288266 -237905398 - AluSx SINE Alu -15 297 1 200 275 0 0 chr1 44288747 44288787 -237904877 + (CGTG)n Simple_repeat Simple_repeat 4 43 0 399 267 35 0 chr1 44289505 44289621 -237904043 + MIR3 SINE MIR 58 177 -31 254 322 0 11 chr1 44290413 44290500 -237903164 + (TG)n Simple_repeat Simple_repeat 1 86 0 1642 162 54 17 chr1 44290790 44291086 -237902578 - AluJb SINE Alu -5 307 1 208 286 0 16 chr1 44291344 44291407 -237902257 + MIR SINE MIR 14 75 -187 431 173 269 0 chr1 44294533 44294637 -237899027 + FLAM_C SINE Alu 1 132 -1 285 98 0 0 chr1 44294637 44294678 -237898986 + (CA)n Simple_repeat Simple_repeat 2 42 0 469 297 179 14 chr1 44295124 44295846 -237897818 - L2 LINE L2 -313 3000 2146 2230 101 3 0 chr1 44297001 44297299 -237896365 - AluSx SINE Alu -13 299 1 279 211 110 9 chr1 44297524 44297633 -237896031 - MER117 DNA MER1_type -31 166 47 490 308 71 0 chr1 44298370 44298552 -237895112 + MIR3 SINE MIR 1 195 -13 252 342 128 32 chr1 44299311 44299361 -237894303 + MIR SINE MIR 21 65 -197 1763 124 12 81 chr1 44299361 44299683 -237893981 - AluJo SINE Alu -12 300 1 252 342 128 32 chr1 44299683 44299819 -237893845 + MIR SINE MIR 65 225 -37 490 246 102 41 chr1 44300249 44300542 -237893122 - L1ME4a LINE L1 -2 6119 5809 1871 106 42 4 chr1 44301306 44301571 -237892093 + AluSq SINE Alu 31 305 -8 1984 183 49 32 chr1 44302717 44303175 -237890489 + L1MB8 LINE L1 3802 4271 -1875 2423 76 0 0 chr1 44303175 44303477 -237890187 + AluY SINE Alu 1 302 -9 1984 183 49 32 chr1 44303477 44303525 -237890139 + L1MB8 LINE L1 4271 4317 -1829 764 201 0 15 chr1 44303529 44303663 -237890001 - FLAM_C SINE Alu -11 132 1 502 181 20 20 chr1 44303663 44303812 -237889852 - L1M4 LINE L1 -1676 4470 4322 2335 84 0 0 chr1 44303822 44304120 -237889544 + AluY SINE Alu 1 298 -13 335 164 16 0 chr1 44304149 44304210 -237889454 - AluJ/FRAM SINE Alu -13 289 228 939 206 5 25 chr1 44304211 44304410 -237889254 + AluJo SINE Alu 115 309 -3 285 200 0 0 chr1 44304411 44304471 -237889193 + L1M4 LINE L1 5225 5284 -862 * 3828 211 33 25 chr1 44304449 44304473 -237889191 + L1MB8 LINE L1 4431 4453 -1725 856 156 0 22 chr1 44304473 44304608 -237889056 + FLAM_C SINE Alu 2 133 0 3828 211 33 25 chr1 44304608 44305340 -237888324 + L1MB8 LINE L1 4453 5178 -1000 1858 161 0 10 chr1 44305340 44305644 -237888020 + AluJo SINE Alu 1 301 -11 3828 211 33 25 chr1 44305644 44305662 -237888002 + L1MB8 LINE L1 5178 5194 -984 1698 164 59 0 chr1 44305662 44305948 -237887716 + AluJo SINE Alu 1 303 -9 3828 211 33 25 chr1 44305948 44306222 -237887442 + L1MB8 LINE L1 5194 5464 -714 2363 61 0 3 chr1 44306222 44306515 -237887149 + AluY SINE Alu 6 297 -14 3828 211 33 25 chr1 44306515 44306578 -237887086 + L1MB8 LINE L1 5464 5525 -653 1641 133 103 0 chr1 44306578 44306849 -237886815 + AluSx SINE Alu 1 299 -13 3828 211 33 25 chr1 44306849 44307055 -237886609 + L1MB8 LINE L1 5525 5728 -450 2388 75 13 0 chr1 44307055 44307362 -237886302 + AluY SINE Alu 1 311 0 3828 211 33 25 chr1 44307362 44307740 -237885924 + L1MB8 LINE L1 5728 6178 0 210 227 0 0 chr1 44307867 44307911 -237885753 - L2 LINE L2 -224 3048 3005 1876 155 3 7 chr1 44307916 44308226 -237885438 + AluJb SINE Alu 1 309 -3 1943 147 20 0 chr1 44308359 44308653 -237885011 - AluJb SINE Alu -14 298 1 2304 87 0 7 chr1 44308719 44309006 -237884658 - AluSx SINE Alu -21 291 7 1137 280 153 12 chr1 44309035 44309929 -237883735 - L2 LINE L2 -14 3299 2264 1277 258 164 16 chr1 44310020 44310586 -237883078 + MER20B DNA MER1_type 5 654 -129 1993 150 0 3 chr1 44310591 44310884 -237882780 - AluJb SINE Alu -20 292 1 180 268 124 10 chr1 44311007 44311104 -237882560 - L2 LINE L2 -1135 2179 2072 568 336 73 23 chr1 44311124 44311466 -237882198 - L2 LINE L2 -1779 1535 1177 830 254 12 64 chr1 44311674 44312016 -237881648 + L1MC4 LINE L1 7719 8042 0 1227 115 0 0 chr1 44312613 44312770 -237880894 + AluSx SINE Alu 3 159 -153 729 174 0 23 chr1 44312975 44313107 -237880557 + AluJo/FLAM SINE Alu 1 129 -183 2291 112 0 3 chr1 44313109 44313405 -237880259 + AluSq SINE Alu 1 295 -18 316 267 0 0 chr1 44313414 44313504 -237880160 + L1MC4 LINE L1 6614 6703 -1339 213 39 0 0 chr1 44313504 44313530 -237880134 + (TG)n Simple_repeat Simple_repeat 2 27 0 198 0 0 0 chr1 44313529 44313551 -237880113 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 2117 96 0 0 chr1 44313825 44314085 -237879579 + AluSq SINE Alu 1 260 -53 291 267 133 56 chr1 44314091 44314271 -237879393 + HAL1 LINE L1 2310 2503 -4 736 158 24 16 chr1 44314446 44314573 -237879091 + FLAM_C SINE Alu 1 128 -5 2545 73 0 3 chr1 44314581 44314883 -237878781 + AluY SINE Alu 1 301 -10 1350 157 0 14 chr1 44314887 44315097 -237878567 + AluJb SINE Alu 90 296 -16 1805 219 71 73 chr1 44315105 44315753 -237877911 + L1MC4 LINE L1 7327 7975 -67 2035 169 3 6 chr1 44315753 44316066 -237877598 - AluJo SINE Alu 0 312 1 1805 219 71 73 chr1 44316066 44316133 -237877531 + L1MC4 LINE L1 7975 8041 -1 2322 106 3 0 chr1 44317135 44317436 -237876228 - AluSg SINE Alu -8 302 1 1783 156 13 23 chr1 44317519 44317821 -237875843 + AluJb SINE Alu 1 299 -13 185 306 0 0 chr1 44317834 44317883 -237875781 - L2 LINE L2 -82 3190 3142 867 237 59 14 chr1 44317890 44318109 -237875555 + MIR SINE MIR 10 238 -24 218 311 0 0 chr1 44318076 44318137 -237875527 + L2 LINE L2 3251 3311 -2 * 312 380 13 20 chr1 44318217 44318367 -237875297 - L2 LINE L2 -175 3097 2949 606 357 120 31 chr1 44318430 44319181 -237874483 - L2 LINE L2 -468 2846 2029 2123 149 3 0 chr1 44320088 44320384 -237873280 + AluSx SINE Alu 1 297 -15 2130 165 54 56 chr1 44321233 44321730 -237871934 + MLT1D LTR MaLR 1 496 -9 23 0 0 0 chr1 44321744 44321767 -237871897 + AT_rich Low_complexity Low_complexity 1 23 0 2263 121 0 0 chr1 44321767 44322065 -237871599 + AluSx SINE Alu 1 298 -14 697 167 16 16 chr1 44322066 44322192 -237871472 - AluJo/FLAM SINE Alu -185 127 2 2141 120 0 0 chr1 44322392 44322667 -237870997 + AluSx SINE Alu 1 275 -37 252 86 0 0 chr1 44322672 44322707 -237870957 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 602 201 108 59 chr1 44322753 44322907 -237870757 - MER58C DNA MER1_type -2206 214 46 1614 171 8 4 chr1 44322907 44323170 -237870494 + AluJb SINE Alu 34 297 -15 602 201 108 59 chr1 44323170 44323219 -237870445 - MER58C DNA MER1_type -2374 46 1 2264 117 3 0 chr1 44323310 44323609 -237870055 + AluSx SINE Alu 5 304 -8 1668 156 98 67 chr1 44324186 44324271 -237869393 + MLT1C LTR MaLR 6 87 -380 1893 183 7 3 chr1 44324271 44324577 -237869087 + AluJo SINE Alu 1 307 -5 1668 156 98 67 chr1 44324577 44324939 -237868725 + MLT1C LTR MaLR 87 467 0 2101 149 0 0 chr1 44325258 44325545 -237868119 + AluSx SINE Alu 1 290 -22 186 43 0 0 chr1 44325545 44325568 -237868096 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2057 126 31 3 chr1 44325845 44326139 -237867525 + AluSx SINE Alu 1 302 -10 611 142 22 75 chr1 44326194 44326328 -237867336 + FLAM_C SINE Alu 1 127 -6 2021 122 31 14 chr1 44326332 44326620 -237867044 + AluSg SINE Alu 1 293 -17 2194 101 29 13 chr1 44326923 44327230 -237866434 + AluSx SINE Alu 1 312 0 691 122 22 72 chr1 44327286 44327425 -237866239 + AluJo/FLAM SINE Alu 1 132 -170 2426 92 0 7 chr1 44327428 44327734 -237865930 + AluSg SINE Alu 6 309 -1 185 237 0 0 chr1 44327770 44327808 -237865856 - MIR SINE MIR -120 88 51 2474 57 0 7 chr1 44328057 44328357 -237865307 + AluY SINE Alu 1 298 -13 628 276 89 29 chr1 44328376 44328568 -237865096 + MIR SINE MIR 2 214 -48 2397 70 3 3 chr1 44328568 44328866 -237864798 + AluY SINE Alu 1 298 -13 628 276 89 29 chr1 44328866 44328919 -237864745 + MIR SINE MIR 214 262 0 596 324 64 52 chr1 44328914 44329337 -237864327 - L2 LINE L2 -2 3311 2884 * 1800 155 93 21 chr1 44329337 44329723 -237863941 + MLT2C2 LTR ERVL 1 414 -50 534 310 100 25 chr1 44329744 44330354 -237863310 - L2 LINE L2 -425 2889 2234 5247 143 47 89 chr1 44330783 44331981 -237861683 - pTR5 LTR ERV1 -1 2437 136 2469 67 0 0 chr1 44332414 44332749 -237860915 - AluY SINE Alu 0 311 1 2156 125 0 3 chr1 44332930 44333234 -237860430 + AluSx SINE Alu 1 303 -9 1880 176 13 0 chr1 44333284 44333591 -237860073 - AluJb SINE Alu -1 311 1 4312 44 38 49 chr1 44333733 44334342 -237859322 - LTR66 LTR ERVL -8 602 1 29 28 0 0 chr1 44334460 44334496 -237859168 + AT_rich Low_complexity Low_complexity 1 36 0 814 178 7 0 chr1 44334496 44334631 -237859033 - AluJo SINE Alu -176 136 1 1416 226 62 36 chr1 44334768 44334971 -237858693 + L1ME1 LINE L1 5734 5930 -236 2413 110 0 0 chr1 44334971 44335280 -237858384 + AluSg SINE Alu 1 309 -1 1416 226 62 36 chr1 44335280 44335492 -237858172 + L1ME1 LINE L1 5930 6160 -6 2497 72 0 0 chr1 44335724 44336030 -237857634 - AluY SINE Alu 0 311 6 276 361 58 19 chr1 44336050 44336084 -237857580 - L2 LINE L2 -2167 1147 1116 1161 206 64 138 chr1 44336084 44336507 -237857157 - MLT1E LTR MaLR 0 593 231 2333 95 7 3 chr1 44336507 44336803 -237856861 - AluSc SINE Alu -12 297 1 1161 206 64 138 chr1 44336803 44337019 -237856645 - MLT1E LTR MaLR -362 231 1 276 361 58 19 chr1 44337019 44337344 -237856320 - L2 LINE L2 -2198 1116 774 528 274 187 13 chr1 44337530 44337920 -237855744 + L2 LINE L2 2851 3308 -5 547 292 20 26 chr1 44338104 44338299 -237855365 + MIR SINE MIR 64 257 -5 2399 98 0 3 chr1 44338359 44338664 -237855000 - AluSq SINE Alu -9 304 1 801 128 0 8 chr1 44338682 44338799 -237854865 - FLAM_C SINE Alu -16 117 2 362 284 0 58 chr1 44338800 44338955 -237854709 + MIR SINE MIR 71 216 -46 2276 102 23 3 chr1 44339058 44339363 -237854301 - AluSq SINE Alu 0 313 3 420 296 84 56 chr1 44340297 44340411 -237853253 + MLT1J LTR MaLR 61 170 -298 1678 166 25 47 chr1 44340411 44340730 -237852934 + AluJb SINE Alu 1 312 0 420 296 84 56 chr1 44340730 44341008 -237852656 + MLT1J LTR MaLR 170 458 -10 433 322 17 11 chr1 44341171 44341351 -237852313 + MIR SINE MIR 36 216 -46 236 250 18 0 chr1 44341508 44341564 -237852100 - L2 LINE L2 -16 3297 3241 274 271 51 102 chr1 44341713 44341775 -237851889 + MER5B DNA MER1_type 59 116 -62 2341 97 0 0 chr1 44341775 44342098 -237851566 - AluSg SINE Alu 0 323 1 274 271 51 102 chr1 44342098 44342151 -237851513 + MER5B DNA MER1_type 116 170 -8 2412 87 7 0 chr1 44342200 44342500 -237851164 - AluSx SINE Alu -10 302 1 290 266 79 45 chr1 44342641 44342818 -237850846 - MIR SINE MIR -2 260 78 228 338 0 0 chr1 44342767 44342844 -237850820 + MIR SINE MIR 186 262 0 * 356 295 0 41 chr1 44342832 44342954 -237850710 - MIR SINE MIR -100 162 46 1057 287 109 18 chr1 44343580 44344296 -237849368 - L2 LINE L2 -1 3312 2511 200 59 29 0 chr1 44344649 44344683 -237848981 + (GGA)n Simple_repeat Simple_repeat 3 37 0 383 295 96 0 chr1 44347361 44347527 -237846137 + MIR SINE MIR 14 195 -67 808 257 28 14 chr1 44347775 44347989 -237845675 + MIR SINE MIR 2 218 -44 219 349 28 18 chr1 44348298 44348407 -237845257 + MIR3 SINE MIR 7 116 -92 2425 94 3 0 chr1 44348416 44348724 -237844940 - AluSx SINE Alu -3 309 1 2562 70 0 16 chr1 44348731 44349047 -237844617 - AluY SINE Alu 0 311 1 606 188 121 7 chr1 44349080 44349229 -237844435 - MIR SINE MIR -48 214 49 248 282 12 24 chr1 44349279 44349364 -237844300 + MIR SINE MIR 137 220 -42 202 350 24 24 chr1 44349489 44349612 -237844052 - MER5A DNA MER1_type 0 189 67 * 362 335 66 0 chr1 44349504 44349656 -237844008 + MER5A DNA MER1_type 26 187 -2 244 235 294 0 chr1 44350244 44350346 -237843318 + L2 LINE L2 3139 3270 -2 193 272 97 9 chr1 44350614 44350728 -237842936 + L2 LINE L2 1932 2055 -1259 598 247 18 42 chr1 44351308 44351474 -237842190 + MIR SINE MIR 57 218 -44 278 275 0 0 chr1 44351532 44351601 -237842063 - MER117 DNA MER1_type -125 72 4 522 247 67 15 chr1 44351757 44351958 -237841706 - MIR3 SINE MIR -32 230 28 414 209 35 35 chr1 44352215 44352330 -237841334 - MIR SINE MIR -62 146 32 697 284 46 0 chr1 44352478 44352696 -237840968 - MIR SINE MIR -1 261 34 31 68 0 0 chr1 44353164 44353223 -237840441 + GC_rich Low_complexity Low_complexity 1 59 0 31 26 0 0 chr1 44353284 44353322 -237840342 + GC_rich Low_complexity Low_complexity 1 38 0 649 302 126 17 chr1 44353872 44354230 -237839434 + L2 LINE L2 2361 2757 -557 2272 107 3 10 chr1 44354232 44354540 -237839124 - AluSx SINE Alu -6 306 1 492 320 87 18 chr1 44354746 44355021 -237838643 + L2 LINE L2 2995 3288 -25 291 306 19 0 chr1 44355769 44355877 -237837787 - MIR SINE MIR -118 144 35 305 239 167 7 chr1 44356258 44356396 -237837268 - MIR3 SINE MIR -7 201 42 2494 88 0 7 chr1 44356404 44356711 -237836953 - AluSc SINE Alu -4 305 1 419 266 123 39 chr1 44357037 44357240 -237836424 - MIR SINE MIR -9 253 34 213 267 0 0 chr1 44357273 44357318 -237836346 + L2 LINE L2 3214 3258 -14 923 192 11 28 chr1 44358443 44358620 -237835044 + FRAM SINE Alu 1 166 -10 463 233 8 42 chr1 44358711 44358831 -237834833 - MIR SINE MIR -62 146 31 497 259 19 38 chr1 44358869 44359027 -237834637 - MIR SINE MIR -30 232 78 38 22 0 0 chr1 44359829 44359874 -237833790 + GC_rich Low_complexity Low_complexity 1 45 0 765 278 115 10 chr1 44361272 44361567 -237832097 - L2 LINE L2 -835 2479 2154 812 246 40 9 chr1 44361576 44361800 -237831864 - MIR SINE MIR -3 259 29 1589 176 3 48 chr1 44361853 44362018 -237831646 - AluJo SINE Alu -31 281 133 2587 62 0 3 chr1 44362018 44362324 -237831340 + AluY SINE Alu 2 306 -5 1589 176 3 48 chr1 44362324 44362448 -237831216 - AluJo SINE Alu -179 133 5 1191 195 58 19 chr1 44362498 44362814 -237830850 + MER33 DNA MER1_type 1 323 -1 1150 177 23 9 chr1 44362823 44363038 -237830626 - MER20 DNA MER1_type 0 219 2 425 206 19 9 chr1 44363177 44363284 -237830380 + L2 LINE L2 2692 2799 -515 320 182 0 0 chr1 44363301 44363356 -237830308 + MER94 DNA DNA 28 82 -52 684 245 68 19 chr1 44363512 44363777 -237829887 - L2 LINE L2 -130 3183 2906 2347 89 69 8 chr1 44363788 44364149 -237829515 + MSTA LTR MaLR 1 383 -45 585 202 9 0 chr1 44364149 44364258 -237829406 - MIR SINE MIR -140 122 13 960 181 0 0 chr1 44364852 44365018 -237828646 + FRAM SINE Alu 1 166 0 317 346 39 0 chr1 44365538 44365665 -237827999 + L2 LINE L2 3134 3265 -7 263 320 0 0 chr1 44365873 44365951 -237827713 - MIR SINE MIR -76 132 55 482 256 68 30 chr1 44365952 44366085 -237827579 + MIR SINE MIR 105 242 -20 417 300 59 6 chr1 44366077 44366247 -237827417 + L2 LINE L2 2122 2300 -1014 * 361 197 0 0 chr1 44367319 44367385 -237826279 + MIR SINE MIR 107 172 -90 257 291 136 36 chr1 44367448 44367668 -237825996 + L2 LINE L2 2841 3082 -190 188 279 63 25 chr1 44368039 44368118 -237825546 - MIR SINE MIR -97 111 30 1175 292 69 12 chr1 44368428 44368836 -237824828 - LTR16B LTR ERVL 0 464 34 535 124 0 65 chr1 44369031 44369100 -237824564 + L1PA10 LINE L1 6036 6108 -60 2328 92 3 16 chr1 44369100 44369429 -237824235 + AluSx SINE Alu 1 312 0 535 124 0 65 chr1 44369429 44369463 -237824201 + L1PA10 LINE L1 6108 6146 -22 225 0 0 0 chr1 44369463 44369488 -237824176 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 535 124 0 65 chr1 44369488 44369506 -237824158 + L1PA10 LINE L1 6146 6164 -4 632 154 36 0 chr1 44369513 44369623 -237824041 + MLT1A1 LTR MaLR 1 114 -251 1254 58 0 32 chr1 44369630 44369784 -237823880 - AluSc SINE Alu -160 149 1 2283 194 75 2 chr1 44370528 44370967 -237822697 + MLT1F LTR MaLR 1 471 -71 2572 77 0 3 chr1 44371893 44372204 -237821460 + AluSx SINE Alu 1 310 -2 660 199 196 72 chr1 44372351 44372642 -237821022 + MER102a DNA MER1_type 1 327 -3 398 246 119 8 chr1 44373080 44373206 -237820458 + MER91C DNA MER1_type 1 140 0 581 259 0 7 chr1 44374059 44374194 -237819470 + MER117 DNA MER1_type 2 135 -62 1063 152 54 54 chr1 44374919 44375068 -237818596 - MER58A DNA MER1_type -2196 224 73 2509 85 0 0 chr1 44375068 44375373 -237818291 - AluSc SINE Alu -4 305 1 1063 152 54 54 chr1 44375373 44375447 -237818217 - MER58A DNA MER1_type -2346 74 1 521 263 0 9 chr1 44375709 44375823 -237817841 + MIR SINE MIR 2 114 -148 221 206 48 63 chr1 44377873 44377936 -237815728 - L3 LINE CR1 -103 1474 1413 512 320 2 5 chr1 44378497 44378723 -237814941 + MER91A DNA MER1_type 2 190 0 278 292 62 0 chr1 44378804 44378900 -237814764 - MIR SINE MIR -73 135 34 256 196 18 18 chr1 44383832 44383888 -237809776 + MLT1K LTR MaLR 187 242 -346 2063 65 33 7 chr1 44384268 44384543 -237809121 - AluY SINE Alu -2 309 28 2235 42 8 0 chr1 44384644 44384904 -237808760 - AluY SINE Alu -49 262 1 2749 45 0 0 chr1 44384993 44385304 -237808360 - AluY SINE Alu 0 311 1 2551 47 3 7 chr1 44386679 44386980 -237806684 - AluY SINE Alu -11 300 1 484 154 118 27 chr1 44388103 44388213 -237805451 - MER20 DNA MER1_type -1 218 99 749 197 0 0 chr1 44392309 44392436 -237801228 + AluJo/FLAM SINE Alu 1 127 -175 2352 90 0 13 chr1 44392437 44392815 -237800849 + AluSg SINE Alu 1 310 0 275 262 119 0 chr1 44392902 44392986 -237800678 + MER5B DNA MER1_type 62 155 -23 772 152 25 71 chr1 44394793 44394865 -237798799 + MER5A DNA MER1_type 2 76 -113 2626 59 7 0 chr1 44394865 44395171 -237798493 + AluY SINE Alu 1 308 -3 772 152 25 71 chr1 44395171 44395295 -237798369 + MER5A DNA MER1_type 76 189 0 286 241 22 24 chr1 44397188 44397307 -237796357 + L1ME4a LINE L1 1190 6035 -41 183 310 0 52 chr1 44398355 44398413 -237795251 + L2 LINE L2 3192 3246 -26 1510 169 60 15 chr1 44398500 44398766 -237794898 + AluJo SINE Alu 5 282 -30 2277 119 3 3 chr1 44400426 44400738 -237792926 + AluSq SINE Alu 1 312 -1 355 300 12 0 chr1 44402426 44402526 -237791138 - MIR SINE MIR -103 105 4 228 227 36 27 chr1 44403319 44403429 -237790235 + (CGGGG)n Simple_repeat Simple_repeat 2 112 0 260 136 23 0 chr1 44403664 44403708 -237789956 - AluSp SINE Alu -124 179 135 2326 97 0 0 chr1 44403708 44403997 -237789667 - AluSc SINE Alu -20 289 1 2236 122 3 0 chr1 44403997 44404300 -237789364 - AluSx SINE Alu -8 304 1 2494 70 0 3 chr1 44404306 44404608 -237789056 - AluY SINE Alu -2 309 9 813 212 24 24 chr1 44404613 44404778 -237788886 - AluJo SINE Alu -21 291 127 24 85 0 0 chr1 44405135 44405194 -237788470 + GC_rich Low_complexity Low_complexity 1 59 0 1007 262 61 45 chr1 44405245 44405364 -237788300 - MER20B DNA MER1_type -23 760 644 2254 77 7 17 chr1 44405364 44405662 -237788002 + AluY SINE Alu 1 295 -16 1007 262 61 45 chr1 44405662 44406073 -237787591 - MER20B DNA MER1_type -139 644 173 2334 88 3 3 chr1 44406073 44406368 -237787296 + AluSp SINE Alu 1 295 -18 1007 262 61 45 chr1 44406368 44406503 -237787161 - MER20B DNA MER1_type -610 173 42 303 296 56 7 chr1 44406570 44406712 -237786952 - L2 LINE L2 0 3313 3165 2313 93 7 0 chr1 44406714 44407003 -237786661 + AluSx SINE Alu 1 291 -21 279 281 71 92 chr1 44407037 44407233 -237786431 + L2 LINE L2 3031 3222 -91 1229 159 19 42 chr1 44407275 44407489 -237786175 + AluJo SINE Alu 1 209 -103 243 173 19 0 chr1 44607937 44607989 -237585675 - L2 LINE L2 -336 2977 2925 481 286 34 11 chr1 44608025 44608203 -237585461 - MIR SINE MIR -21 241 60 26 30 0 0 chr1 44608419 44608452 -237585212 + AT_rich Low_complexity Low_complexity 1 33 0 30 27 0 0 chr1 44608527 44608564 -237585100 + AT_rich Low_complexity Low_complexity 1 37 0 330 227 0 34 chr1 44608670 44608758 -237584906 - MIR SINE MIR -97 165 81 480 295 90 82 chr1 44608840 44609131 -237584533 - L1MC4a LINE L1 -1871 5937 5641 1939 134 29 0 chr1 44609131 44609406 -237584258 - AluSx SINE Alu -11 301 19 480 295 90 82 chr1 44609406 44609470 -237584194 - L1MC4a LINE L1 -2167 5641 5579 226 233 83 125 chr1 44609483 44609603 -237584061 - L1MC4a LINE L1 -591 5530 5416 223 318 65 17 chr1 44609624 44609887 -237583777 + L2 LINE L2 1985 2305 -1009 370 236 71 8 chr1 44610212 44610290 -237583374 - MER103 DNA DNA -27 139 49 290 25 0 25 chr1 44610290 44610330 -237583334 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 370 236 71 8 chr1 44610330 44610378 -237583286 - MER103 DNA DNA -117 49 5 2502 62 0 46 chr1 44610495 44610820 -237582844 - AluY SINE Alu -1 310 1 267 366 96 37 chr1 44610856 44611233 -237582431 + L2 LINE L2 2865 3263 -9 2274 103 3 0 chr1 44611609 44611901 -237581763 + AluSx SINE Alu 3 295 -17 402 195 0 0 chr1 44611901 44611988 -237581676 + GA-rich Low_complexity Low_complexity 1 87 0 2589 51 0 0 chr1 44612373 44612668 -237580996 + AluY SINE Alu 1 295 -16 2048 126 40 10 chr1 44612679 44612980 -237580684 + AluSx SINE Alu 1 310 -2 602 204 9 0 chr1 44612996 44613109 -237580555 + FLAM_A SINE Alu 10 123 -19 730 198 9 40 chr1 44613112 44613339 -237580325 + L1M4 LINE L1 2183 2402 -3744 2131 114 0 0 chr1 44613521 44613793 -237579871 + AluSx SINE Alu 20 291 -21 2804 152 8 57 chr1 44613793 44614387 -237579277 + L1MB3 LINE L1 5599 6163 -20 1668 152 53 28 chr1 44614388 44614671 -237578993 - AluJo SINE Alu -22 290 1 1550 148 70 33 chr1 44614688 44614959 -237578705 + AluJo SINE Alu 23 303 -9 1464 104 45 0 chr1 44614978 44615198 -237578466 + MER30 DNA MER1_type 1 230 0 2187 112 20 0 chr1 44615413 44615707 -237577957 + AluSg SINE Alu 1 300 -10 274 267 141 7 chr1 44615707 44615842 -237577822 + MIR SINE MIR 22 174 -88 292 291 20 47 chr1 44616362 44616510 -237577154 + MIR3 SINE MIR 33 176 -32 492 258 23 0 chr1 44616629 44616761 -237576903 + MIR SINE MIR 81 215 -47 345 229 160 23 chr1 44616960 44617091 -237576573 - L1M4 LINE L1 -2913 3233 3085 1097 210 30 0 chr1 44617117 44617379 -237576285 - L1MB7 LINE L1 -9 6175 5906 344 323 78 55 chr1 44617509 44617726 -237575938 - L1M4 LINE L1 -3046 3100 2879 3178 115 87 6 chr1 44617727 44617946 -237575718 + MER49 LTR ERV1 1 201 -722 2449 96 0 3 chr1 44617946 44618247 -237575417 + AluSx SINE Alu 1 300 -12 3178 115 87 6 chr1 44618247 44618557 -237575107 + MER49 LTR ERV1 201 573 -350 409 145 0 0 chr1 44618658 44618720 -237574944 - AluJ/FLAM SINE Alu -240 62 1 210 259 49 0 chr1 44618787 44618861 -237574803 + MIR SINE MIR 69 134 -74 185 286 63 0 chr1 44619163 44619226 -237574438 - L2 LINE L2 -27 3286 3220 1466 152 0 64 chr1 44619285 44619367 -237574297 + AluJo SINE Alu 60 146 -166 2256 97 17 7 chr1 44619367 44619665 -237573999 + AluSp SINE Alu 1 301 -12 1466 152 0 64 chr1 44619665 44619846 -237573818 + AluJo SINE Alu 146 306 -6 278 309 58 50 chr1 44619863 44619875 -237573789 - MIR SINE MIR -57 205 195 2456 92 0 6 chr1 44619875 44620189 -237573475 - AluSq SINE Alu -1 312 1 278 309 58 50 chr1 44620189 44620315 -237573349 - MIR SINE MIR -67 195 66 2664 58 0 6 chr1 44620332 44620645 -237573019 + AluY SINE Alu 1 311 0 1250 296 39 43 chr1 44620659 44620973 -237572691 + LTR16B LTR ERVL 1 314 -150 2276 113 122 27 chr1 44620973 44621010 -237572654 + MER31A LTR ERV1 1 33 -452 2322 111 0 3 chr1 44621010 44621316 -237572348 - AluSx SINE Alu -7 305 1 2276 113 122 27 chr1 44621316 44621721 -237571943 + MER31A LTR ERV1 33 485 0 1250 296 39 43 chr1 44621721 44621872 -237571792 + LTR16B LTR ERVL 314 464 0 2236 102 0 3 chr1 44621923 44622216 -237571448 - AluSc SINE Alu -11 298 7 1839 125 10 74 chr1 44622225 44622400 -237571264 - AluJo SINE Alu -20 292 144 2197 125 0 0 chr1 44622400 44622696 -237570968 + AluSx SINE Alu 1 296 -16 1839 125 10 74 chr1 44622696 44622832 -237570832 - AluJo SINE Alu -168 144 1 2346 64 4 4 chr1 44623128 44623449 -237570215 + AluSc SINE Alu 1 321 0 718 300 88 33 chr1 44623457 44623932 -237569732 + L2 LINE L2 2776 3272 0 206 363 42 0 chr1 44624130 44624298 -237569366 - L2 LINE L2 -1613 1701 1527 210 293 49 0 chr1 44624451 44624533 -237569131 + L2 LINE L2 1936 2021 -1293 402 297 55 8 chr1 44624559 44624687 -237568977 - L2 LINE L2 -5 3267 3134 421 220 106 61 chr1 44624823 44624899 -237568765 + MER5A DNA MER1_type 1 87 -102 2529 76 0 0 chr1 44624899 44625203 -237568461 + AluY SINE Alu 1 304 -7 421 220 106 61 chr1 44625203 44625258 -237568406 + MER5A DNA MER1_type 87 138 -51 670 182 0 0 chr1 44625283 44625393 -237568271 - FLAM_A SINE Alu -32 110 1 307 167 0 0 chr1 44625393 44625447 -237568217 + MER5A DNA MER1_type 125 178 -11 253 277 40 30 chr1 44625469 44625570 -237568094 + L2 LINE L2 2174 2275 -1039 361 346 156 19 chr1 44625734 44626107 -237567557 + L2 LINE L2 2867 3290 -23 2536 76 3 9 chr1 44626337 44626652 -237567012 - AluSp SINE Alu 0 313 1 1305 189 120 4 chr1 44626677 44626794 -237566870 + AluJo SINE Alu 1 103 -209 270 0 0 0 chr1 44626794 44626824 -237566840 + (CA)n Simple_repeat Simple_repeat 1 30 0 1305 189 120 4 chr1 44626824 44626965 -237566699 + AluJo SINE Alu 103 289 -23 218 190 0 35 chr1 44626965 44627023 -237566641 + (TATG)n Simple_repeat Simple_repeat 2 57 0 2168 121 3 19 chr1 44627091 44627398 -237566266 - AluSq SINE Alu -11 302 1 197 209 0 0 chr1 44627532 44627575 -237566089 + L2 LINE L2 3015 3057 -215 196 250 0 0 chr1 44627783 44627831 -237565833 - L2 LINE L2 -2791 523 476 180 205 26 0 chr1 44627969 44628008 -237565656 + MIR SINE MIR 2 41 -221 1412 181 19 27 chr1 44628065 44628325 -237565339 + AluJo SINE Alu 47 304 -8 334 305 98 59 chr1 44628686 44628889 -237564775 + L2 LINE L2 2576 2786 -528 370 276 169 31 chr1 44629141 44629525 -237564139 + L2 LINE L2 2852 3288 -25 371 203 0 0 chr1 44629661 44629725 -237563939 + MER45 DNA AcHobo 1518 1581 0 304 254 143 8 chr1 44630093 44630219 -237563445 - L1ME4a LINE L1 -30 6091 5949 1718 154 52 65 chr1 44630360 44630530 -237563134 + L1MB7 LINE L1 5696 5867 -317 2177 129 0 0 chr1 44630530 44630832 -237562832 - AluJb SINE Alu -6 306 5 1718 154 52 65 chr1 44630832 44631063 -237562601 + L1MB7 LINE L1 5867 6092 -92 322 226 10 29 chr1 44631079 44631181 -237562483 - L1M3 LINE L1 -338 5830 5731 252 152 0 0 chr1 44631195 44631241 -237562423 + L1MB4 LINE L1 6109 6154 -26 1075 224 30 0 chr1 44631246 44631509 -237562155 - L1MB2 LINE L1 -16 6155 5885 2410 82 0 55 chr1 44631509 44631839 -237561825 - AluSq SINE Alu -1 312 1 1277 177 83 0 chr1 44631840 44632105 -237561559 + L1MB5 LINE L1 5850 6136 -38 3185 182 19 39 chr1 44632130 44632856 -237560808 - L1MB2 LINE L1 -16 6155 5444 2225 114 13 0 chr1 44633017 44633323 -237560341 - AluSx SINE Alu -2 310 1 198 131 66 33 chr1 44633368 44633429 -237560235 + CT-rich Low_complexity Low_complexity 3 65 0 2219 110 0 0 chr1 44633464 44633764 -237559900 - AluSg SINE Alu -10 300 1 330 314 16 21 chr1 44633767 44633958 -237559706 - L1M4 LINE L1 -1479 4667 4478 * 1262 141 75 109 chr1 44633947 44634267 -237559397 - L1MC1 LINE L1 -12 6321 6013 497 125 0 0 chr1 44634270 44634342 -237559322 + AluSx SINE Alu 2 73 -240 2029 169 16 91 chr1 44634343 44634451 -237559213 - LTR12 LTR ERV1 -234 480 365 2365 68 13 7 chr1 44634451 44634760 -237558904 + AluY SINE Alu 1 311 0 216 0 0 0 chr1 44634762 44634786 -237558878 + (TA)n Simple_repeat Simple_repeat 2 25 0 2029 169 16 91 chr1 44634786 44635189 -237558475 - LTR12 LTR ERV1 -350 364 5 1253 158 0 0 chr1 44635189 44635373 -237558291 + AluSx SINE Alu 65 248 -64 243 0 0 0 chr1 44635373 44635400 -237558264 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2419 127 25 30 chr1 44635415 44635557 -237558107 - L1MC1 LINE L1 -304 6029 5888 2175 124 20 0 chr1 44635557 44635856 -237557808 - AluSx SINE Alu -7 305 1 2419 127 25 30 chr1 44635856 44636153 -237557511 - L1MC1 LINE L1 -445 5888 5592 2400 96 0 0 chr1 44636319 44636620 -237557044 - AluSc SINE Alu -8 301 1 2294 106 3 0 chr1 44636620 44636922 -237556742 - AluSx SINE Alu -8 304 1 1436 119 96 46 chr1 44636926 44637187 -237556477 + LTR12 LTR ERV1 1 274 -440 313 253 11 0 chr1 44637212 44637299 -237556365 + LTR30 LTR ERV1 556 643 -79 736 100 0 0 chr1 44637301 44637401 -237556263 + LTR12 LTR ERV1 615 714 0 327 286 90 16 chr1 44637465 44637654 -237556010 - L1M4 LINE L1 -1837 4309 4107 390 294 109 17 chr1 44637692 44638097 -237555567 - L1M4 LINE L1 -2098 4048 3607 1368 209 148 61 chr1 44638129 44638141 -237555523 - MLT2B1 LTR ERVL 0 520 510 2126 135 0 0 chr1 44638141 44638437 -237555227 + AluSx SINE Alu 1 296 -16 1368 209 148 61 chr1 44638437 44638475 -237555189 - MLT2B1 LTR ERVL -10 510 477 2397 98 0 0 chr1 44638475 44638782 -237554882 - AluSg SINE Alu -3 307 1 1368 209 148 61 chr1 44638782 44639204 -237554460 - MLT2B1 LTR ERVL -43 477 6 2613 11 0 0 chr1 44639634 44639913 -237553751 + AluYa5 SINE Alu 21 299 -12 2300 113 0 3 chr1 44639939 44640250 -237553414 + AluSx SINE Alu 3 312 0 2463 81 0 7 chr1 44640314 44640623 -237553041 + AluY SINE Alu 1 307 -4 1895 154 6 25 chr1 44640640 44640958 -237552706 + AluJb SINE Alu 1 312 0 2399 77 0 3 chr1 44641095 44641394 -237552270 + AluY SINE Alu 1 298 -13 628 276 89 29 chr1 44641413 44641605 -237552059 + MIR SINE MIR 2 214 -48 2397 70 3 3 chr1 44641605 44641903 -237551761 + AluY SINE Alu 1 298 -13 628 276 89 29 chr1 44641903 44641956 -237551708 + MIR SINE MIR 214 262 0 596 324 64 52 chr1 44641951 44642374 -237551290 - L2 LINE L2 -2 3311 2884 * 1800 155 93 21 chr1 44642374 44642760 -237550904 + MLT2C2 LTR ERVL 1 414 -50 534 310 100 25 chr1 44642781 44643391 -237550273 - L2 LINE L2 -425 2889 2234 5247 143 47 89 chr1 44643820 44645018 -237548646 - pTR5 LTR ERV1 -1 2437 136 2469 67 0 0 chr1 44645451 44645786 -237547878 - AluY SINE Alu 0 311 1 2156 125 0 3 chr1 44645967 44646271 -237547393 + AluSx SINE Alu 1 303 -9 1880 176 13 0 chr1 44646321 44646628 -237547036 - AluJb SINE Alu -1 311 1 4312 44 38 49 chr1 44646770 44647379 -237546285 - LTR66 LTR ERVL -8 602 1 29 28 0 0 chr1 44647497 44647533 -237546131 + AT_rich Low_complexity Low_complexity 1 36 0 814 178 7 0 chr1 44647533 44647668 -237545996 - AluJo SINE Alu -176 136 1 1416 226 62 36 chr1 44647805 44648008 -237545656 + L1ME1 LINE L1 5734 5930 -236 2413 110 0 0 chr1 44648008 44648317 -237545347 + AluSg SINE Alu 1 309 -1 1416 226 62 36 chr1 44648317 44648529 -237545135 + L1ME1 LINE L1 5930 6160 -6 2497 72 0 0 chr1 44648761 44649067 -237544597 - AluY SINE Alu 0 311 6 276 361 58 19 chr1 44649087 44649121 -237544543 - L2 LINE L2 -2167 1147 1116 1161 206 64 138 chr1 44649121 44649544 -237544120 - MLT1E LTR MaLR 0 593 231 2333 95 7 3 chr1 44649544 44649840 -237543824 - AluSc SINE Alu -12 297 1 1161 206 64 138 chr1 44649840 44650056 -237543608 - MLT1E LTR MaLR -362 231 1 276 361 58 19 chr1 44650056 44650381 -237543283 - L2 LINE L2 -2198 1116 774 528 274 187 13 chr1 44650567 44650957 -237542707 + L2 LINE L2 2851 3308 -5 547 292 20 26 chr1 44651141 44651336 -237542328 + MIR SINE MIR 64 257 -5 2399 98 0 3 chr1 44651396 44651701 -237541963 - AluSq SINE Alu -9 304 1 801 128 0 8 chr1 44651719 44651836 -237541828 - FLAM_C SINE Alu -16 117 2 362 284 0 58 chr1 44651837 44651992 -237541672 + MIR SINE MIR 71 216 -46 2276 102 23 3 chr1 44652095 44652400 -237541264 - AluSq SINE Alu 0 313 3 420 296 84 56 chr1 44653334 44653448 -237540216 + MLT1J LTR MaLR 61 170 -298 1678 166 25 47 chr1 44653448 44653767 -237539897 + AluJb SINE Alu 1 312 0 420 296 84 56 chr1 44653767 44654045 -237539619 + MLT1J LTR MaLR 170 458 -10 433 322 17 11 chr1 44654208 44654388 -237539276 + MIR SINE MIR 36 216 -46 236 250 18 0 chr1 44654545 44654601 -237539063 - L2 LINE L2 -16 3297 3241 274 271 51 102 chr1 44654750 44654812 -237538852 + MER5B DNA MER1_type 59 116 -62 2341 97 0 0 chr1 44654812 44655135 -237538529 - AluSg SINE Alu 0 323 1 274 271 51 102 chr1 44655135 44655188 -237538476 + MER5B DNA MER1_type 116 170 -8 2412 87 7 0 chr1 44655237 44655537 -237538127 - AluSx SINE Alu -10 302 1 290 266 79 45 chr1 44655678 44655855 -237537809 - MIR SINE MIR -2 260 78 228 338 0 0 chr1 44655804 44655881 -237537783 + MIR SINE MIR 186 262 0 * 356 295 0 41 chr1 44655869 44655991 -237537673 - MIR SINE MIR -100 162 46 1057 287 109 18 chr1 44656617 44657333 -237536331 - L2 LINE L2 -1 3312 2511 200 59 29 0 chr1 44657686 44657720 -237535944 + (GGA)n Simple_repeat Simple_repeat 3 37 0 409 295 96 0 chr1 44660398 44660564 -237533100 + MIR SINE MIR 14 195 -67 816 257 28 14 chr1 44660812 44661026 -237532638 + MIR SINE MIR 2 218 -44 229 360 26 18 chr1 44661335 44661449 -237532215 + MIR3 SINE MIR 7 121 -87 2288 94 3 0 chr1 44661453 44661761 -237531903 - AluSx SINE Alu -3 309 1 2420 70 0 16 chr1 44661768 44662084 -237531580 - AluY SINE Alu 0 311 1 600 188 121 7 chr1 44662117 44662266 -237531398 - MIR SINE MIR -48 214 49 246 282 12 24 chr1 44662316 44662401 -237531263 + MIR SINE MIR 137 220 -42 376 329 120 0 chr1 44662526 44662693 -237530971 + MER5A DNA MER1_type 1 187 -2 251 235 294 0 chr1 44663281 44663383 -237530281 + L2 LINE L2 3139 3270 -2 205 272 97 9 chr1 44663651 44663765 -237529899 + L2 LINE L2 1932 2055 -1259 602 247 18 42 chr1 44664345 44664511 -237529153 + MIR SINE MIR 57 218 -44 288 275 0 0 chr1 44664569 44664638 -237529026 - MER117 DNA MER1_type -125 72 4 526 247 67 15 chr1 44664794 44664995 -237528669 - MIR3 SINE MIR -32 230 28 424 209 35 35 chr1 44665252 44665367 -237528297 - MIR SINE MIR -62 146 32 709 284 46 0 chr1 44665515 44665733 -237527931 - MIR SINE MIR -1 261 34 31 68 0 0 chr1 44666201 44666260 -237527404 + GC_rich Low_complexity Low_complexity 1 59 0 31 26 0 0 chr1 44666321 44666359 -237527305 + GC_rich Low_complexity Low_complexity 1 38 0 688 315 109 31 chr1 44666909 44667269 -237526395 + L2 LINE L2 2361 2758 -556 2135 107 3 10 chr1 44667269 44667577 -237526087 - AluSx SINE Alu -6 306 1 688 315 109 31 chr1 44667577 44667629 -237526035 + L2 LINE L2 2758 2805 -509 506 320 87 18 chr1 44667783 44668058 -237525606 + L2 LINE L2 2995 3288 -25 312 306 19 0 chr1 44668806 44668914 -237524750 - MIR SINE MIR -118 144 35 309 261 159 0 chr1 44669295 44669433 -237524231 - MIR3 SINE MIR -7 201 42 2348 88 0 7 chr1 44669441 44669748 -237523916 - AluSc SINE Alu -4 305 1 426 271 123 39 chr1 44670074 44670277 -237523387 - MIR SINE MIR -9 253 34 217 302 0 0 chr1 44670310 44670363 -237523301 + L2 LINE L2 3214 3266 -6 200 340 68 0 chr1 44670630 44670733 -237522931 + L2 LINE L2 3155 3264 -8 861 192 11 28 chr1 44671480 44671657 -237522007 + FRAM SINE Alu 1 166 -10 473 233 8 42 chr1 44671748 44671868 -237521796 - MIR SINE MIR -62 146 31 499 259 19 38 chr1 44671906 44672064 -237521600 - MIR SINE MIR -30 232 78 38 22 0 0 chr1 44672866 44672911 -237520753 + GC_rich Low_complexity Low_complexity 1 45 0 787 278 115 10 chr1 44674309 44674604 -237519060 - L2 LINE L2 -835 2479 2154 804 246 40 9 chr1 44674613 44674837 -237518827 - MIR SINE MIR -3 259 29 1476 176 3 48 chr1 44674890 44675055 -237518609 - AluJo SINE Alu -31 281 133 2459 59 0 3 chr1 44675055 44675361 -237518303 + AluY SINE Alu 2 306 -5 1476 176 3 48 chr1 44675361 44675485 -237518179 - AluJo SINE Alu -179 133 5 1180 200 61 19 chr1 44675541 44675851 -237517813 + MER33 DNA MER1_type 1 323 -1 1251 177 23 9 chr1 44675860 44676075 -237517589 - MER20 DNA MER1_type 0 219 2 183 341 112 6 chr1 44676075 44676245 -237517419 - L2 LINE L2 -1178 2136 1949 * 428 234 9 0 chr1 44676214 44676321 -237517343 + L2 LINE L2 2692 2799 -515 323 182 0 0 chr1 44676338 44676393 -237517271 + MER94 DNA DNA 28 82 -52 689 249 68 19 chr1 44676549 44676814 -237516850 - L2 LINE L2 -130 3183 2906 2364 94 67 6 chr1 44676825 44677186 -237516478 + MSTA LTR MaLR 1 383 -45 582 202 9 0 chr1 44677186 44677295 -237516369 - MIR SINE MIR -140 122 13 1023 181 0 0 chr1 44677889 44678055 -237515609 + FRAM SINE Alu 1 166 0 319 347 33 20 chr1 44678552 44678702 -237514962 + L2 LINE L2 3114 3265 -7 190 320 0 0 chr1 44678910 44678988 -237514676 - MIR SINE MIR -76 132 55 * 487 267 80 27 chr1 44678972 44679122 -237514542 + MIR SINE MIR 85 242 -20 421 300 59 6 chr1 44679114 44679284 -237514380 + L2 LINE L2 2122 2300 -1014 * 364 197 0 0 chr1 44680356 44680422 -237513242 + MIR SINE MIR 107 172 -90 268 300 136 36 chr1 44680485 44680705 -237512959 + L2 LINE L2 2841 3082 -190 194 279 63 25 chr1 44681076 44681155 -237512509 - MIR SINE MIR -97 111 30 1254 291 62 38 chr1 44681465 44681918 -237511746 - LTR16B LTR ERVL 0 464 1 539 124 0 65 chr1 44682068 44682137 -237511527 + L1PA10 LINE L1 6036 6108 -60 2187 92 3 16 chr1 44682137 44682466 -237511198 + AluSx SINE Alu 1 312 0 539 124 0 65 chr1 44682466 44682500 -237511164 + L1PA10 LINE L1 6108 6146 -22 225 0 0 0 chr1 44682500 44682525 -237511139 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 539 124 0 65 chr1 44682525 44682543 -237511121 + L1PA10 LINE L1 6146 6164 -4 630 154 36 0 chr1 44682550 44682660 -237511004 + MLT1A1 LTR MaLR 1 114 -251 1181 58 0 32 chr1 44682667 44682821 -237510843 - AluSc SINE Alu -160 149 1 2315 194 75 2 chr1 44683565 44684004 -237509660 + MLT1F LTR MaLR 1 471 -71 2459 73 0 3 chr1 44684930 44685243 -237508421 + AluSx SINE Alu 1 312 0 797 199 196 72 chr1 44685400 44685691 -237507973 + MER102a DNA MER1_type 1 327 -3 453 246 119 8 chr1 44686129 44686255 -237507409 + MER91C DNA MER1_type 1 140 0 601 259 0 7 chr1 44687108 44687243 -237506421 + MER117 DNA MER1_type 2 135 -62 1155 156 54 54 chr1 44687968 44688117 -237505547 - MER58A DNA MER1_type -2196 224 73 2371 85 0 0 chr1 44688117 44688422 -237505242 - AluSc SINE Alu -4 305 1 1155 156 54 54 chr1 44688422 44688496 -237505168 - MER58A DNA MER1_type -2346 74 1 511 272 0 9 chr1 44688758 44688872 -237504792 + MIR SINE MIR 2 114 -148 224 206 48 63 chr1 44690922 44690985 -237502679 - L3 LINE CR1 -103 1474 1413 527 343 0 6 chr1 44691546 44691712 -237501952 + MER91A DNA MER1_type 2 166 -30 241 289 0 0 chr1 44691720 44691772 -237501892 + MER91A DNA MER1_type 139 190 0 287 292 62 0 chr1 44691853 44691949 -237501715 - MIR SINE MIR -73 135 34 2146 72 30 7 chr1 44697324 44697628 -237496036 - AluY SINE Alu 0 311 1 240 35 0 0 chr1 44697673 44697702 -237495962 + (TCTCC)n Simple_repeat Simple_repeat 1 29 0 1933 101 19 0 chr1 44697703 44697971 -237495693 - AluSx SINE Alu -39 273 1 257 333 95 8 chr1 44698264 44698390 -237495274 - MIR SINE MIR -50 212 76 535 251 80 45 chr1 44698392 44698591 -237495073 - MER63A DNA MER1_type -4 206 1 447 281 35 0 chr1 44698968 44699082 -237494582 + MER91A DNA MER1_type 22 139 -57 297 218 0 0 chr1 44699187 44699242 -237494422 + MER91A DNA MER1_type 142 196 0 450 287 213 16 chr1 44699836 44700146 -237493518 + L2 LINE L2 2236 2606 -708 1185 111 0 0 chr1 44700377 44700539 -237493125 - AluSq SINE Alu -6 307 146 258 346 131 0 chr1 44700799 44700906 -237492758 - L2 LINE L2 -1 3312 3192 674 185 167 12 chr1 44700941 44701103 -237492561 + MER3 DNA MER1_type 2 188 -21 225 281 164 23 chr1 44701690 44701818 -237491846 - MIR3 SINE MIR -61 147 2 275 336 112 8 chr1 44702992 44703117 -237490547 + L2 LINE L2 2617 2754 -560 24 0 0 0 chr1 44703291 44703315 -237490349 + AT_rich Low_complexity Low_complexity 1 24 0 247 309 213 16 chr1 44703944 44704193 -237489471 + L2 LINE L2 2965 3262 -10 21 0 0 0 chr1 44705363 44705384 -237488280 + GC_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr1 44705418 44705443 -237488221 + (CTG)n Simple_repeat Simple_repeat 1 25 0 1220 241 113 45 chr1 44706448 44706994 -237486670 + MLT1H1 LTR MaLR 3 554 -1 815 243 196 45 chr1 44707664 44708042 -237485622 + MLT1K LTR MaLR 154 588 0 2209 90 0 17 chr1 44708139 44708439 -237485225 + AluSg SINE Alu 1 295 -15 2471 61 0 3 chr1 44708865 44709176 -237484488 - AluY SINE Alu -1 310 1 255 237 0 75 chr1 44709223 44709316 -237484348 + MIR3 SINE MIR 9 94 -114 219 136 0 45 chr1 44709321 44709346 -237484318 + (A)n Simple_repeat Simple_repeat 1 25 -17 2396 77 3 0 chr1 44709346 44709658 -237484006 + AluSp SINE Alu 1 313 0 219 136 0 45 chr1 44709658 44709676 -237483988 + (A)n Simple_repeat Simple_repeat 25 42 0 196 319 154 44 chr1 44709811 44710175 -237483489 - L2 LINE L2 -337 2977 2574 628 279 13 19 chr1 44710575 44710729 -237482935 + MER91A DNA MER1_type 24 176 -20 379 242 91 10 chr1 44710728 44710827 -237482837 + MER91A DNA MER1_type 90 196 0 * 1970 85 69 62 chr1 44711307 44711612 -237482052 - AluSc SINE Alu -2 307 1 389 280 65 48 chr1 44713421 44713589 -237480075 + MIR SINE MIR 46 216 -46 218 324 213 0 chr1 44715116 44715224 -237478440 + L2 LINE L2 3140 3270 -2 2285 109 0 0 chr1 44716072 44716366 -237477298 - AluSq SINE Alu -19 294 1 484 293 157 6 chr1 44716419 44716805 -237476859 + L2 LINE L2 2771 3221 -92 186 327 0 18 chr1 44716829 44716884 -237476780 + MIR SINE MIR 7 60 -202 300 270 27 0 chr1 44718325 44718399 -237475265 - L2 LINE L2 0 3313 3238 226 313 16 0 chr1 44718536 44718600 -237475064 - L2 LINE L2 -3 3310 3246 1635 181 0 65 chr1 44718634 44718780 -237474884 + AluJb SINE Alu 1 155 -157 2351 84 0 3 chr1 44718780 44719076 -237474588 + AluY SINE Alu 1 295 -16 2571 63 0 0 chr1 44719082 44719384 -237474280 + AluY SINE Alu 1 302 -9 1635 181 0 65 chr1 44719384 44719551 -237474113 + AluJb SINE Alu 160 300 -12 298 290 216 4 chr1 44719589 44719834 -237473830 - L2 LINE L2 -662 2652 2356 245 309 9 27 chr1 44720187 44720297 -237473367 + MIR SINE MIR 42 149 -59 1471 165 4 4 chr1 44720874 44721110 -237472554 + AluJb SINE Alu 72 307 -5 401 250 181 7 chr1 44721118 44721262 -237472402 - MIR3 SINE MIR -15 193 25 217 364 31 31 chr1 44722254 44722383 -237471281 - L3 LINE CR1 -129 1448 1320 205 378 10 20 chr1 44722640 44722738 -237470926 - MIR SINE MIR -63 145 49 277 276 77 65 chr1 44723387 44723557 -237470107 - MIR3 SINE MIR -4 204 33 228 184 0 0 chr1 44724170 44724219 -237469445 + (TG)n Simple_repeat Simple_repeat 2 50 0 272 303 79 0 chr1 44726309 44726398 -237467266 + MIR SINE MIR 58 153 -55 1074 216 3 107 chr1 44726519 44726810 -237466854 - MIR SINE MIR 0 262 2 1571 136 92 7 chr1 44727013 44727286 -237466378 + AluSx SINE Alu 17 312 0 263 311 8 41 chr1 44727510 44727632 -237466032 - MIR SINE MIR 0 262 145 504 276 45 0 chr1 44727886 44728020 -237465644 - MIR SINE MIR -110 152 13 301 121 12 48 chr1 44728585 44728668 -237464996 + (GAA)n Simple_repeat Simple_repeat 1 80 0 1019 206 5 58 chr1 44728785 44728939 -237464725 + MIR SINE MIR 9 149 -113 2091 134 0 7 chr1 44728939 44729071 -237464593 + AluSx SINE Alu 1 132 -180 2296 84 3 7 chr1 44729071 44729400 -237464264 + AluSx SINE Alu 1 328 0 2091 134 0 7 chr1 44729400 44729573 -237464091 + AluSx SINE Alu 132 305 -7 1019 206 5 58 chr1 44729573 44729641 -237464023 + MIR SINE MIR 149 219 -43 303 93 0 0 chr1 44729725 44729768 -237463896 + (TC)n Simple_repeat Simple_repeat 1 43 0 1123 303 53 13 chr1 44730031 44730483 -237463181 - MLT1K LTR MaLR -2 474 5 1201 262 86 43 chr1 44730609 44731075 -237462589 - LTR33 LTR ERVL -24 497 12 246 95 0 0 chr1 44731079 44731121 -237462543 + (TA)n Simple_repeat Simple_repeat 2 43 0 360 202 226 8 chr1 44731151 44731275 -237462389 + MIR SINE MIR 87 237 -25 596 273 156 28 chr1 44731318 44731607 -237462057 - MLT1J2 LTR MaLR 0 450 125 300 254 79 55 chr1 44731608 44731773 -237461891 - LTR33A LTR ERVL -22 501 333 326 298 80 17 chr1 44732124 44732320 -237461344 - LTR33A LTR ERVL -343 182 2 721 257 20 15 chr1 44732796 44732924 -237460740 + MER3 DNA MER1_type 7 138 -71 2335 105 0 0 chr1 44732924 44733220 -237460444 - AluY SINE Alu -15 296 1 721 257 20 15 chr1 44733220 44733293 -237460371 + MER3 DNA MER1_type 138 209 0 2224 115 147 41 chr1 44734167 44734583 -237459081 - LTR46 LTR ERV1 0 460 1 423 0 0 0 chr1 44734758 44734805 -237458859 + (CA)n Simple_repeat Simple_repeat 1 47 0 579 259 68 32 chr1 44735347 44735604 -237458060 + MIR SINE MIR 3 262 0 399 286 130 12 chr1 44736131 44736292 -237457372 + MIR SINE MIR 7 186 -76 207 241 121 24 chr1 44736320 44736403 -237457261 + MIR SINE MIR 166 256 -6 685 156 148 0 chr1 44736609 44736737 -237456927 + MER45A DNA AcHobo 10 156 -22 2214 103 24 0 chr1 44736863 44737153 -237456511 - AluSx SINE Alu -15 297 1 353 74 0 19 chr1 44737613 44737667 -237455997 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 430 315 46 8 chr1 44737729 44737967 -237455697 - L1ME4a LINE L1 -286 5835 5589 2105 74 63 4 chr1 44738276 44738571 -237455093 - AluY SINE Alu 0 311 1 24 0 0 0 chr1 44738572 44738596 -237455068 + AT_rich Low_complexity Low_complexity 1 24 0 243 222 101 30 chr1 44738610 44738709 -237454955 - L1ME4a LINE L1 -2 6119 6014 319 313 85 21 chr1 44738952 44739233 -237454431 - L1ME4a LINE L1 -565 5556 5258 198 0 0 0 chr1 44739394 44739416 -237454248 + (TTCC)n Simple_repeat Simple_repeat 1 22 0 2204 118 14 0 chr1 44739416 44739704 -237453960 - AluSx SINE Alu -20 292 1 328 284 0 0 chr1 44739704 44739785 -237453879 - L1ME4a LINE L1 -1123 5023 4943 1025 150 11 53 chr1 44739985 44740172 -237453492 + AluJo SINE Alu 104 282 -30 337 92 154 0 chr1 44741045 44741110 -237452554 + MADE1 DNA Mariner 1 75 -5 21 36 0 0 chr1 44741226 44741254 -237452410 + AT_rich Low_complexity Low_complexity 1 28 0 1745 142 42 42 chr1 44741254 44741565 -237452099 + AluJo SINE Alu 1 311 -1 364 202 128 0 chr1 44741874 44741968 -237451696 - MLT2F LTR ERVL 0 663 558 353 232 108 10 chr1 44741955 44742094 -237451570 - MLT1G3 LTR MaLR -95 495 267 * 1053 242 100 21 chr1 44742107 44742437 -237451227 + MLT1J2 LTR MaLR 87 442 -8 2137 103 3 10 chr1 44742630 44742942 -237450722 + THE1C LTR MaLR 1 310 -65 1059 163 108 44 chr1 44743043 44743098 -237450566 - MLT2C2 LTR ERVL 0 464 414 2228 96 0 4 chr1 44743098 44743410 -237450254 - AluSg SINE Alu 0 311 1 1059 163 108 44 chr1 44743410 44743604 -237450060 - MLT2C2 LTR ERVL -50 414 198 2038 151 0 0 chr1 44743604 44743903 -237449761 - AluJb SINE Alu -13 299 1 921 202 83 24 chr1 44743921 44744173 -237449491 - MER74A LTR ERVL -251 307 41 716 121 44 126 chr1 44744156 44744246 -237449418 - MLT2C2 LTR ERVL -275 189 124 * 785 222 76 0 chr1 44744246 44744390 -237449274 + FRAM SINE Alu 1 155 -11 716 121 44 126 chr1 44744390 44744505 -237449159 - MLT2C2 LTR ERVL -340 124 1 187 255 64 0 chr1 44744505 44744552 -237449112 + L2 LINE L2 2885 2934 -380 673 150 114 0 chr1 44744824 44744964 -237448700 + LTR50 LTR ERVL 1 156 -639 2165 208 22 28 chr1 44744989 44745533 -237448131 - MER74A LTR ERVL -17 541 1 1191 205 74 80 chr1 44745538 44746012 -237447652 + LTR50 LTR ERVL 151 621 -174 1150 174 5 24 chr1 44746044 44746256 -237447408 - AluJo SINE Alu -30 282 75 189 171 0 0 chr1 44746261 44746296 -237447368 + T-rich Low_complexity Low_complexity 1 35 0 2372 89 3 13 chr1 44746463 44746778 -237446886 - AluSx SINE Alu 0 312 1 1159 233 169 12 chr1 44747355 44747602 -237446062 + LTR50 LTR ERVL 1 208 -587 2318 188 24 44 chr1 44747602 44748098 -237445566 + MER66B LTR ERV1 1 486 0 1159 233 169 12 chr1 44748098 44748258 -237445406 + LTR50 LTR ERVL 208 472 -323 2268 92 0 3 chr1 44748259 44748573 -237445091 - AluSg SINE Alu 0 313 1 372 147 41 5 chr1 44748596 44748674 -237444990 + LTR50 LTR ERVL 448 795 0 302 257 109 20 chr1 44748745 44748846 -237444818 - MIR SINE MIR -2 260 151 6107 73 14 35 chr1 44749052 44749209 -237444455 - L1MA3 LINE L1 0 6305 6146 2338 86 0 13 chr1 44749209 44749512 -237444152 - AluSq SINE Alu -14 299 1 6107 73 14 35 chr1 44749512 44750299 -237443365 - L1MA3 LINE L1 -159 6146 5381 431 253 32 0 chr1 44750795 44750890 -237442774 - MIR SINE MIR -110 152 55 237 265 0 0 chr1 44750982 44751031 -237442633 - MIR SINE MIR -212 50 2 206 306 0 0 chr1 44751038 44751087 -237442577 + polypurine Low_complexity Low_complexity 1 49 0 21 57 0 0 chr1 44753156 44753191 -237440473 + AT_rich Low_complexity Low_complexity 1 35 0 295 270 9 43 chr1 44753216 44753331 -237440333 + MIR SINE MIR 66 176 -86 669 170 36 0 chr1 44753687 44753851 -237439813 + FLAM_C SINE Alu 2 169 0 299 146 0 0 chr1 44753975 44754023 -237439641 + LTR65 LTR ERV1 339 386 -283 957 265 88 19 chr1 44754106 44754528 -237439136 + L1M4 LINE L1 3826 4276 -1870 327 284 63 47 chr1 44754574 44754873 -237438791 + L1M4 LINE L1 4406 4709 -1437 1318 229 103 37 chr1 44754978 44755481 -237438183 + L2 LINE L2 2781 3313 0 1114 209 40 0 chr1 44755610 44755811 -237437853 + MER63A DNA MER1_type 2 210 0 388 262 168 0 chr1 44755857 44755964 -237437700 + L2 LINE L2 3189 3313 0 479 220 102 58 chr1 44756013 44756131 -237437533 - MER97c DNA MER1_type? -1 1089 978 2395 80 0 0 chr1 44756131 44756442 -237437222 + AluSq SINE Alu 1 311 0 479 220 102 58 chr1 44756442 44756635 -237437029 - MER97c DNA MER1_type? -112 978 763 307 203 17 0 chr1 44756749 44756808 -237436856 - U7 snRNA snRNA -1 62 3 1864 125 3 62 chr1 44757284 44757589 -237436075 - AluSx SINE Alu -11 301 15 2173 210 81 13 chr1 44757736 44758331 -237435333 - L1ME1 LINE L1 -5 6972 6338 1247 175 76 0 chr1 44758342 44758458 -237435206 - AluJb SINE Alu -57 255 149 522 0 0 0 chr1 44758458 44758516 -237435148 + (TG)n Simple_repeat Simple_repeat 2 59 0 1247 175 76 0 chr1 44758516 44758622 -237435042 - AluJb SINE Alu -163 149 16 587 206 0 93 chr1 44758630 44758760 -237434904 - L1ME1 LINE L1 -738 6251 6143 2192 138 0 0 chr1 44758760 44759072 -237434592 - AluSx SINE Alu 0 312 1 587 206 0 93 chr1 44759072 44759135 -237434529 - L1ME1 LINE L1 -846 6143 6076 * 1015 238 44 19 chr1 44759123 44759488 -237434176 - L1ME1 LINE L1 -3759 3198 2874 1461 137 0 0 chr1 44759516 44759720 -237433944 - AluSg/x SINE Alu -12 298 95 1163 99 0 0 chr1 44759728 44759879 -237433785 + AluSg/x SINE Alu 155 305 -5 216 0 0 0 chr1 44759881 44759905 -237433759 + (CA)n Simple_repeat Simple_repeat 1 24 0 2032 237 38 22 chr1 44759919 44760636 -237433028 - L1ME1 LINE L1 -4839 2016 1289 977 186 10 44 chr1 44760645 44760849 -237432815 - AluJb SINE Alu -14 298 102 3833 126 44 61 chr1 44760849 44761648 -237432016 - LTR1 LTR ERV1 0 785 1 2211 75 11 4 chr1 44761668 44761969 -237431695 + AluSg SINE Alu 1 303 0 658 164 0 0 chr1 44762006 44762110 -237431554 - AluJb SINE Alu -208 104 1 440 239 88 102 chr1 44762219 44762562 -237431102 - L1ME1 LINE L1 -5566 1289 952 582 291 70 17 chr1 44762852 44763082 -237430582 - L1ME1 LINE L1 -6607 252 11 832 158 18 29 chr1 44763101 44763221 -237430443 - L1MB4 LINE L1 -1 6179 6060 2108 177 59 14 chr1 44763221 44763662 -237430002 + LOR1b LTR ERV1 1 461 0 832 158 18 29 chr1 44763662 44763712 -237429952 - L1MB4 LINE L1 -120 6060 6011 1938 160 11 0 chr1 44763717 44764073 -237429591 - L1MB4 LINE L1 -251 5923 5564 879 141 56 0 chr1 44764074 44764275 -237429389 + L1M3 LINE L1 5221 5431 -745 1553 177 35 1 chr1 44764276 44764750 -237428914 - L1MB4 LINE L1 -622 5558 5073 1411 219 75 71 chr1 44764903 44765273 -237428391 - MER97a DNA MER1_type? -393 501 134 2356 116 0 0 chr1 44765273 44765574 -237428090 - AluSx SINE Alu -9 303 3 315 0 0 0 chr1 44765576 44765611 -237428053 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1828 140 32 14 chr1 44765613 44765891 -237427773 - AluJb SINE Alu -29 283 1 1411 219 75 71 chr1 44765891 44765993 -237427671 - MER97a DNA MER1_type? -760 134 21 902 216 11 0 chr1 44766022 44766207 -237427457 + MER5A DNA MER1_type 2 188 -1 240 328 57 16 chr1 44766717 44766839 -237426825 - L2 LINE L2 -5 3267 3141 1965 111 16 63 chr1 44766898 44767213 -237426451 + AluJb SINE Alu 1 300 -12 203 277 188 0 chr1 44767620 44767721 -237425943 + MIR SINE MIR 71 190 -72 2112 146 0 10 chr1 44767845 44768154 -237425510 - AluSx SINE Alu -6 306 1 1873 179 0 0 chr1 44768164 44768449 -237425215 - AluSx SINE Alu -24 288 4 1368 254 18 18 chr1 44768913 44769252 -237424412 - MER21B LTR ERV1 -427 436 98 397 194 54 21 chr1 44769291 44769384 -237424280 - MER21B LTR ERV1 -767 96 1 2073 137 0 35 chr1 44769955 44770270 -237423394 + AluJb SINE Alu 1 304 -8 287 309 174 13 chr1 44770300 44770530 -237423134 + L2 LINE L2 2588 2854 -460 222 264 73 73 chr1 44770591 44770701 -237422963 + L2 LINE L2 2991 3100 -213 3235 77 22 9 chr1 44770733 44771149 -237422515 + LTR46 LTR ERV1 1 425 -35 243 0 0 0 chr1 44771149 44771176 -237422488 + (TG)n Simple_repeat Simple_repeat 2 28 0 3235 77 22 9 chr1 44771176 44771213 -237422451 + LTR46 LTR ERV1 425 460 0 1109 172 76 73 chr1 44771214 44771422 -237422242 - MER58B DNA MER1_type -2082 338 127 2265 90 0 0 chr1 44771422 44771711 -237421953 - AluSq SINE Alu -24 289 1 1109 172 76 73 chr1 44771711 44771805 -237421859 - MER58B DNA MER1_type -2293 127 35 440 309 78 11 chr1 44772967 44773158 -237420506 - L2 LINE L2 -519 2795 2592 305 315 42 21 chr1 44773948 44774091 -237419573 + MIR3 SINE MIR 53 198 -10 261 83 0 0 chr1 44775660 44775696 -237417968 + (T)n Simple_repeat Simple_repeat 1 36 0 278 253 105 16 chr1 44775697 44775798 -237417866 - FRAM/FAM SINE Alu -88 87 12 210 310 99 28 chr1 44777795 44777937 -237415727 + L2 LINE L2 2301 2452 -862 802 232 187 41 chr1 44779108 44779547 -237414117 - HAL1 LINE L1 -27 2480 1978 1389 250 123 11 chr1 44779587 44780043 -237413621 - HAL1 LINE L1 -1911 596 90 3110 186 68 21 chr1 44780079 44780633 -237413031 - L1MB4 LINE L1 -119 6061 5464 2399 92 0 16 chr1 44780633 44780948 -237412716 - AluSg SINE Alu 0 310 1 3110 186 68 21 chr1 44780948 44781110 -237412554 - L1MB4 LINE L1 -716 5464 5311 737 212 0 0 chr1 44781111 44781257 -237412407 - FRAM SINE Alu -8 168 23 824 242 57 8 chr1 44781270 44781534 -237412130 - L1MB4 LINE L1 -847 5299 5023 235 282 55 45 chr1 44781507 44781617 -237412047 - HAL1 LINE L1 -2382 125 15 * 2033 144 10 0 chr1 44781638 44781930 -237411734 + AluSq SINE Alu 1 295 -18 1678 295 136 38 chr1 44782454 44783035 -237410629 + L2 LINE L2 974 1496 -1818 2376 94 3 0 chr1 44783035 44783333 -237410331 + AluSp SINE Alu 2 300 -13 1678 295 136 38 chr1 44783333 44783598 -237410066 + L2 LINE L2 1496 1734 -1580 1232 142 78 0 chr1 44783598 44783817 -237409847 - MER46A DNA MER2_type 0 236 1 1678 295 136 38 chr1 44783817 44783971 -237409693 + L2 LINE L2 1734 1871 -1443 1563 251 85 59 chr1 44783971 44784531 -237409133 - MER20B DNA MER1_type -3 781 237 1917 164 13 13 chr1 44784531 44784842 -237408822 - AluJb SINE Alu -1 311 1 1563 251 85 59 chr1 44784842 44784985 -237408679 - MER20B DNA MER1_type -547 237 54 1609 166 13 58 chr1 44784985 44785293 -237408371 + AluJb SINE Alu 1 294 -18 1563 251 85 59 chr1 44785293 44785349 -237408315 - MER20B DNA MER1_type -730 54 1 1678 295 136 38 chr1 44785349 44785631 -237408033 + L2 LINE L2 1871 2468 -846 276 170 0 0 chr1 44785631 44785684 -237407980 + (CA)n Simple_repeat Simple_repeat 2 54 0 368 285 114 13 chr1 44785716 44785874 -237407790 + L2 LINE L2 3099 3272 0 880 207 26 60 chr1 44787269 44787440 -237406224 + MER58A DNA MER1_type 1 163 -2257 2327 124 36 29 chr1 44787440 44787761 -237405903 - MLT2D LTR ERVL 0 414 88 1771 168 14 7 chr1 44787761 44788053 -237405611 + AluJb SINE Alu 1 294 -18 2327 124 36 29 chr1 44788053 44788142 -237405522 - MLT2D LTR ERVL -326 88 1 880 207 26 60 chr1 44788142 44788202 -237405462 + MER58A DNA MER1_type 163 224 0 277 167 131 24 chr1 44789015 44789099 -237404565 - MIR SINE MIR -81 127 35 191 346 128 23 chr1 44790433 44790566 -237403098 - MIR SINE MIR 0 262 116 1905 144 17 7 chr1 44791418 44791709 -237401955 - AluSx SINE Alu -18 294 1 295 337 145 0 chr1 44792602 44792768 -237400896 + MER117 DNA MER1_type 5 194 -3 305 255 32 0 chr1 44794307 44794401 -237399263 + L2 LINE L2 2249 2345 -969 439 277 76 32 chr1 44794501 44794934 -237398730 + L2 LINE L2 2560 3001 -312 425 152 267 0 chr1 44795416 44795521 -237398143 - FLAM_C SINE Alu 0 133 1 190 276 0 17 chr1 44798624 44798682 -237394982 - MIR SINE MIR -187 75 19 1715 162 54 17 chr1 44798945 44799241 -237394423 + AluJb SINE Alu 1 307 -5 243 322 0 11 chr1 44799531 44799618 -237394046 + (CA)n Simple_repeat Simple_repeat 1 86 0 370 267 35 0 chr1 44800410 44800526 -237393138 - MIR3 SINE MIR -31 177 58 180 0 0 0 chr1 44801265 44801285 -237392379 + (CA)n Simple_repeat Simple_repeat 1 20 0 1840 152 30 30 chr1 44801761 44802057 -237391607 + AluSx SINE Alu 1 296 -16 1692 172 16 41 chr1 44802079 44802399 -237391265 + AluJb SINE Alu 1 312 0 21 36 0 0 chr1 44803976 44804004 -237389660 + GC_rich Low_complexity Low_complexity 1 28 0 985 309 144 19 chr1 44805026 44806055 -237387609 + L2 LINE L2 1544 2700 -614 815 144 0 0 chr1 44806126 44806244 -237387420 + FRAM SINE Alu 42 159 -17 1603 264 28 10 chr1 44806248 44806744 -237386920 - L1MC3 LINE L1 -64 7721 7217 236 239 120 11 chr1 44806768 44806860 -237386804 - MLT1F1 LTR MaLR -459 108 7 219 345 43 0 chr1 44807109 44807225 -237386439 - MIR SINE MIR -115 147 27 271 215 152 0 chr1 44807789 44807868 -237385796 - MIR SINE MIR -70 138 48 348 288 109 53 chr1 44809965 44810250 -237383414 - L2 LINE L2 -5 3308 3008 285 230 348 7 chr1 44810254 44810389 -237383275 + L1MC/D LINE L1 5522 5702 -2106 1014 237 79 6 chr1 44812972 44813435 -237380229 - MLT1F1 LTR MaLR 0 567 3 353 326 51 15 chr1 44813437 44813601 -237380063 - MIR SINE MIR -69 139 9 1864 150 0 14 chr1 44813792 44814078 -237379586 + AluJb SINE Alu 1 282 -30 525 204 129 0 chr1 44814579 44814726 -237378938 - MIR SINE MIR 0 262 97 599 217 54 98 chr1 44814837 44815061 -237378603 - LTR16A LTR ERVL -125 325 119 2282 101 20 0 chr1 44815061 44815357 -237378307 + AluSq SINE Alu 5 306 -7 599 217 54 98 chr1 44815357 44815471 -237378193 - LTR16A LTR ERVL -331 119 1 2390 94 0 3 chr1 44815642 44815951 -237377713 - AluSq SINE Alu -5 308 1 1232 143 148 14 chr1 44816012 44816229 -237377435 - AluSx SINE Alu -16 296 51 463 315 21 0 chr1 44816252 44816395 -237377269 - MIR SINE MIR -109 153 8 270 263 13 13 chr1 44816471 44816547 -237377117 + MIR SINE MIR 87 162 -100 1835 186 0 7 chr1 44816809 44817104 -237376560 + AluJo SINE Alu 2 294 -18 201 299 15 0 chr1 44817270 44817337 -237376327 + MIR SINE MIR 80 147 -115 401 302 79 0 chr1 44817405 44817544 -237376120 - MIR SINE MIR -63 199 50 566 211 35 14 chr1 44817670 44817812 -237375852 + L2 LINE L2 3169 3313 0 335 300 56 28 chr1 44818291 44818471 -237375193 - MIR3 SINE MIR -4 204 20 344 49 0 131 chr1 44818867 44818928 -237374736 + AluSp SINE Alu 143 195 -108 183 200 0 0 chr1 44819256 44819296 -237374368 + MIR SINE MIR 80 119 -143 247 253 58 0 chr1 44819582 44819682 -237373982 - MIR SINE MIR -55 153 74 385 294 50 7 chr1 44820217 44820386 -237373278 + MIR SINE MIR 24 197 -62 21 57 0 0 chr1 44821361 44821396 -237372268 + GC_rich Low_complexity Low_complexity 1 35 0 30 69 0 0 chr1 44821445 44821503 -237372161 + GC_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr1 44821578 44821615 -237372049 + GC_rich Low_complexity Low_complexity 1 37 0 210 170 21 0 chr1 44821757 44821804 -237371860 + (CGGGG)n Simple_repeat Simple_repeat 2 49 0 208 231 0 26 chr1 44822105 44822183 -237371481 + G-rich Low_complexity Low_complexity 2 77 0 243 173 19 0 chr1 44822847 44822899 -237370765 - L2 LINE L2 -336 2977 2925 480 286 34 11 chr1 44822935 44823113 -237370551 - MIR SINE MIR -21 241 60 26 30 0 0 chr1 44823329 44823362 -237370302 + AT_rich Low_complexity Low_complexity 1 33 0 30 27 0 0 chr1 44823437 44823474 -237370190 + AT_rich Low_complexity Low_complexity 1 37 0 330 227 0 34 chr1 44823580 44823668 -237369996 - MIR SINE MIR -97 165 81 480 295 90 82 chr1 44823750 44824041 -237369623 - L1MC4a LINE L1 -1871 5937 5641 1931 135 29 0 chr1 44824041 44824315 -237369349 - AluSx SINE Alu -12 300 19 480 295 90 82 chr1 44824315 44824379 -237369285 - L1MC4a LINE L1 -2167 5641 5579 226 233 83 125 chr1 44824392 44824512 -237369152 - L1MC4a LINE L1 -591 5530 5416 216 322 65 17 chr1 44824533 44824796 -237368868 + L2 LINE L2 1985 2305 -1009 370 236 71 8 chr1 44825121 44825199 -237368465 - MER103 DNA DNA -27 139 49 290 25 0 25 chr1 44825199 44825239 -237368425 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 370 236 71 8 chr1 44825239 44825287 -237368377 - MER103 DNA DNA -117 49 5 2514 62 0 40 chr1 44825404 44825727 -237367937 - AluY SINE Alu -1 310 1 267 366 96 37 chr1 44825763 44826140 -237367524 + L2 LINE L2 2865 3263 -9 2264 103 3 0 chr1 44826516 44826807 -237366857 + AluSx SINE Alu 3 294 -18 414 195 0 0 chr1 44826807 44826894 -237366770 + GA-rich Low_complexity Low_complexity 1 87 0 2603 48 0 0 chr1 44827279 44827574 -237366090 + AluY SINE Alu 1 295 -16 2061 123 40 10 chr1 44827585 44827886 -237365778 + AluSx SINE Alu 1 310 -2 555 220 9 0 chr1 44827905 44828014 -237365650 + FLAM_A SINE Alu 14 123 -19 720 203 9 40 chr1 44828017 44828244 -237365420 + L1MB3 LINE L1 2183 2402 -3744 2171 114 0 0 chr1 44828426 44828706 -237364958 + AluSx SINE Alu 20 299 -13 1887 98 0 42 chr1 44829218 44829483 -237364181 - AluSc SINE Alu -8 301 48 4312 164 13 63 chr1 44829484 44829943 -237363721 + L1MB3 LINE L1 5175 5655 -528 2329 96 3 7 chr1 44829943 44830235 -237363429 + AluSx SINE Alu 1 291 -21 4312 164 13 63 chr1 44830235 44830829 -237362835 + L1MB3 LINE L1 5655 6163 -20 1682 148 53 32 chr1 44830830 44831114 -237362550 - AluJo SINE Alu -22 290 1 1535 149 71 34 chr1 44831131 44831400 -237362264 + AluJo SINE Alu 23 301 -11 1489 100 45 0 chr1 44831419 44831639 -237362025 + MER30 DNA MER1_type 1 230 0 2186 109 20 0 chr1 44831854 44832148 -237361516 + AluSg SINE Alu 1 300 -10 274 267 141 7 chr1 44832148 44832283 -237361381 + MIR SINE MIR 22 174 -88 313 284 20 47 chr1 44832803 44832951 -237360713 + MIR3 SINE MIR 33 176 -32 492 258 23 0 chr1 44833070 44833202 -237360462 + MIR SINE MIR 81 215 -47 345 229 160 23 chr1 44833401 44833532 -237360132 - L1MEc LINE L1 -2913 3302 3154 1097 210 30 0 chr1 44833558 44833820 -237359844 - L1MB7 LINE L1 -9 6175 5906 344 323 78 55 chr1 44833950 44834167 -237359497 - L1MEc LINE L1 -3046 3169 2948 3477 111 73 51 chr1 44834168 44834387 -237359277 + MER49 LTR ERV1 1 214 -709 2433 96 0 3 chr1 44834387 44834688 -237358976 + AluSx SINE Alu 1 300 -12 3477 111 73 51 chr1 44834688 44835032 -237358632 + MER49 LTR ERV1 214 549 -374 2178 136 7 3 chr1 44835032 44835342 -237358322 - AluSx SINE Alu -1 311 1 3477 111 73 51 chr1 44835342 44835381 -237358283 + MER49 LTR ERV1 549 586 -337 2393 72 27 0 chr1 44835381 44835673 -237357991 + AluSx SINE Alu 1 300 -12 3477 111 73 51 chr1 44835673 44835700 -237357964 + MER49 LTR ERV1 586 646 -277 342 325 80 17 chr1 44835956 44836193 -237357471 + L2 LINE L2 872 1123 -2191 1665 159 27 33 chr1 44836195 44836463 -237357201 + AluJo SINE Alu 4 271 -41 2490 82 0 0 chr1 44836463 44836769 -237356895 - AluY SINE Alu -5 306 1 1665 159 27 33 chr1 44836769 44836801 -237356863 + AluJo SINE Alu 271 302 -10 1928 143 0 42 chr1 44837257 44837565 -237356099 - AluSx SINE Alu -17 295 1 265 217 43 0 chr1 44837571 44837640 -237356024 - L2 LINE L2 -234 3079 3008 1044 175 6 0 chr1 44837642 44837802 -237355862 - AluJo SINE Alu -151 161 1 910 284 10 0 chr1 44838038 44838242 -237355422 + LTR33 LTR ERVL 10 215 -306 384 277 9 45 chr1 44838290 44838402 -237355262 + LTR33 LTR ERVL 312 419 -102 488 237 40 61 chr1 44838402 44838626 -237355038 - L1ME3A LINE L1 -193 5969 5734 445 270 58 0 chr1 44838638 44838775 -237354889 - L1ME3A LINE L1 -499 5671 5527 182 37 37 0 chr1 44838853 44838880 -237354784 + (TTTCC)n Simple_repeat Simple_repeat 4 31 0 1073 182 24 0 chr1 44838886 44839056 -237354608 - AluJb SINE Alu -10 302 129 654 199 28 92 chr1 44839062 44839196 -237354468 - L1MEc LINE L1 -3579 2636 2495 504 187 45 52 chr1 44839196 44839330 -237354334 - FLAM_A SINE Alu 0 133 1 654 199 28 92 chr1 44839330 44839382 -237354282 - L1MEc LINE L1 -3720 2495 2441 2069 90 52 0 chr1 44839382 44839694 -237353970 - AluSg SINE Alu 0 327 2 2457 62 0 19 chr1 44839702 44840011 -237353653 - AluY SINE Alu -8 303 1 654 199 28 92 chr1 44840011 44840130 -237353534 - L1MEc LINE L1 -3781 2434 2340 670 210 62 83 chr1 44840138 44840476 -237353188 - L1MC4 LINE L1 0 8042 7712 2046 141 0 17 chr1 44840476 44840775 -237352889 + AluJb SINE Alu 1 294 -18 214 0 0 98 chr1 44840776 44840827 -237352837 + (TCTCCC)n Simple_repeat Simple_repeat 5 50 0 9514 65 78 20 chr1 44840828 44842137 -237351527 + SVA Other Other 2 1386 0 190 0 32 32 chr1 44842140 44842171 -237351493 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 3260 210 82 47 chr1 44842275 44842724 -237350940 - L1MC4 LINE L1 -412 7630 7198 2274 126 0 0 chr1 44842724 44843033 -237350631 - AluSx SINE Alu -3 309 1 3260 210 82 47 chr1 44843033 44843508 -237350156 - L1MC4 LINE L1 -844 7198 6673 2288 108 0 0 chr1 44843518 44843815 -237349849 - AluSx SINE Alu -15 297 1 510 326 17 9 chr1 44843815 44844045 -237349619 - L1MEc LINE L1 -4603 1793 1562 356 200 43 14 chr1 44844045 44844115 -237349549 - MER2 DNA MER2_type 0 345 274 2234 121 0 0 chr1 44844115 44844420 -237349244 + AluSx SINE Alu 1 305 -7 27 73 0 0 chr1 44844427 44844482 -237349182 + AT_rich Low_complexity Low_complexity 1 55 0 647 164 10 0 chr1 44844493 44844597 -237349067 + FLAM_C SINE Alu 3 107 -36 239 175 0 0 chr1 44844638 44844678 -237348986 - MER2 DNA MER2_type -305 40 1 366 271 65 10 chr1 44844679 44844794 -237348870 - L1M2 LINE L1 -4406 1810 1703 1815 133 3 90 chr1 44844794 44845117 -237348547 + AluJb SINE Alu 1 295 -17 366 271 65 10 chr1 44845117 44845200 -237348464 - L1M2 LINE L1 -4513 1703 1353 234 0 0 0 chr1 44845200 44845226 -237348438 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 2146 142 7 0 chr1 44845227 44845536 -237348128 - AluSx SINE Alu 0 312 2 993 190 67 5 chr1 44845541 44845722 -237347942 - AluJb SINE Alu 0 313 117 200 31 62 0 chr1 44845722 44845754 -237347910 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 993 190 67 5 chr1 44845754 44845787 -237347877 - AluJb SINE Alu -196 117 87 355 119 0 17 chr1 44845788 44845847 -237347817 - AluY SINE Alu -51 250 193 1676 62 0 14 chr1 44845862 44846071 -237347593 - AluY SINE Alu -100 211 6 241 238 49 74 chr1 44846097 44846219 -237347445 - L1MEc LINE L1 -5049 1347 1229 235 282 26 0 chr1 44846463 44846541 -237347123 + LTR40c LTR ERVL 217 296 -169 219 186 0 0 chr1 44846577 44846620 -237347044 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 303 236 0 28 chr1 44846622 44846694 -237346970 + L1MCa LINE L1 1995 2064 -4362 * 336 344 0 0 chr1 44846663 44846753 -237346911 + L1MC4 LINE L1 6894 6983 -1339 2158 83 21 31 chr1 44846756 44847045 -237346619 - AluSx SINE Alu -26 286 1 2119 100 3 55 chr1 44847053 44847364 -237346300 - AluSx SINE Alu -13 299 5 2424 75 7 0 chr1 44847602 44847896 -237345768 + AluSc SINE Alu 1 296 -13 800 252 98 68 chr1 44848057 44848447 -237345217 + L1MC4a LINE L1 5682 6090 -1718 1753 181 10 7 chr1 44848447 44848740 -237344924 - AluJb SINE Alu -18 294 1 800 252 98 68 chr1 44848740 44848818 -237344846 + L1MC4a LINE L1 6090 6164 -1644 210 179 0 0 chr1 44849434 44849473 -237344191 - MIR SINE MIR -118 144 106 510 287 39 6 chr1 44849918 44850099 -237343565 - MIR SINE MIR 0 262 76 319 284 20 47 chr1 44850244 44850392 -237343272 - MIR3 SINE MIR -32 176 33 1739 135 83 0 chr1 44850860 44851126 -237342538 - AluJo SINE Alu -20 292 5 358 301 40 40 chr1 44851719 44851895 -237341769 + MER91A DNA MER1_type 21 196 0 529 234 13 136 chr1 44853130 44853365 -237340299 + MIR SINE MIR 56 261 -1 2090 114 6 56 chr1 44854327 44854651 -237339013 + AluSx SINE Alu 1 308 -4 195 42 0 0 chr1 44854651 44854675 -237338989 + (GGGGA)n Simple_repeat Simple_repeat 1 24 0 414 57 0 0 chr1 44854679 44854732 -237338932 + (GAAAA)n Simple_repeat Simple_repeat 3 55 0 2153 109 0 39 chr1 44854837 44855148 -237338516 + AluSx SINE Alu 13 311 -1 2015 158 3 0 chr1 44856057 44856368 -237337296 - AluJo SINE Alu 0 312 1 2252 126 0 0 chr1 44856459 44856761 -237336903 + AluJb SINE Alu 2 303 -9 597 116 9 18 chr1 44856766 44856878 -237336786 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 230 290 97 11 chr1 44856878 44856971 -237336693 - MIR SINE MIR -128 134 34 2290 95 0 36 chr1 44856972 44857278 -237336386 + AluSx SINE Alu 1 295 -17 207 327 64 9 chr1 44857510 44857620 -237336044 - L2 LINE L2 -643 2671 2556 961 199 55 30 chr1 44857652 44858054 -237335610 + MLT1D LTR MaLR 28 471 -34 868 204 102 14 chr1 44858054 44858270 -237335394 + MER8 DNA MER2_type 2 236 -3 961 199 55 30 chr1 44858270 44858306 -237335358 + MLT1D LTR MaLR 471 505 0 2054 135 30 3 chr1 44859370 44859674 -237333990 + AluJb SINE Alu 1 312 0 1003 276 77 56 chr1 44860604 44860767 -237332897 + L2 LINE L2 2636 2794 -519 2206 112 0 31 chr1 44860767 44861088 -237332576 + AluSx SINE Alu 1 311 -1 1003 276 77 56 chr1 44861088 44861360 -237332304 + L2 LINE L2 2794 3059 -254 2072 116 0 11 chr1 44861360 44861636 -237332028 + AluSx SINE Alu 1 273 -39 1003 276 77 56 chr1 44861636 44861649 -237332015 + L2 LINE L2 3059 3070 -243 366 23 0 0 chr1 44861649 44861692 -237331972 + (CA)n Simple_repeat Simple_repeat 1 43 0 1003 276 77 56 chr1 44861692 44861895 -237331769 + L2 LINE L2 3070 3312 -1 799 293 27 34 chr1 44861922 44862185 -237331479 + MIR SINE MIR 2 262 0 573 207 18 0 chr1 44862657 44862768 -237330896 + MER81 DNA DNA 2 114 0 305 308 155 11 chr1 44862866 44863175 -237330489 + L2 LINE L2 1647 1993 -1321 702 284 110 19 chr1 44863205 44863578 -237330086 + L2 LINE L2 2130 2536 -778 1133 141 238 13 chr1 44863779 44864026 -237329638 - AluSg1 SINE Alu 0 298 1 390 318 143 27 chr1 44864036 44864259 -237329405 + L2 LINE L2 3020 3268 -4 404 297 6 55 chr1 44864402 44864567 -237329097 + MIR3 SINE MIR 16 172 -36 670 68 9 12 chr1 44864840 44865074 -237328590 + AluSx SINE Alu 2 310 -2 1493 155 113 0 chr1 44865259 44865524 -237328140 + AluJo SINE Alu 1 295 -17 252 333 0 0 chr1 44866242 44866323 -237327341 + MLT1K LTR MaLR 490 570 -18 240 238 71 48 chr1 44866719 44866803 -237326861 + MLT1K LTR MaLR 182 267 -321 3421 134 53 73 chr1 44866879 44867107 -237326557 - L1MB2 LINE L1 -45 6126 5895 1006 139 238 4 chr1 44867107 44867351 -237326313 - AluJb SINE Alu -1 301 1 3421 134 53 73 chr1 44867351 44867471 -237326193 - L1MB2 LINE L1 -276 5895 5774 1897 158 0 20 chr1 44867471 44867768 -237325896 - AluJo SINE Alu -21 291 1 3421 134 53 73 chr1 44867768 44867779 -237325885 - L1MB2 LINE L1 -397 5774 5764 2343 100 10 0 chr1 44867779 44868080 -237325584 - AluSx SINE Alu -8 304 1 3421 134 53 73 chr1 44868080 44868413 -237325251 - L1MB2 LINE L1 -407 5764 5446 457 171 57 24 chr1 44868982 44869009 -237324655 + L1MA9 LINE L1 6186 6211 -101 417 39 0 0 chr1 44869009 44869060 -237324604 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 457 171 57 24 chr1 44869060 44869155 -237324509 + L1MA9 LINE L1 6211 6312 0 274 247 59 12 chr1 44869195 44869280 -237324384 - L2 LINE L2 -25 3288 3200 208 295 105 9 chr1 44869345 44869450 -237324214 + MIR SINE MIR 132 246 -16 715 179 122 46 chr1 44869638 44869834 -237323830 + MIR SINE MIR 23 233 -29 342 349 14 7 chr1 44869882 44870028 -237323636 - L2 LINE L2 -191 3081 2935 292 252 172 7 chr1 44870277 44870428 -237323236 - MIR SINE MIR -12 250 75 847 227 39 128 chr1 44870842 44871326 -237322338 + MLT1J2 LTR MaLR 10 450 0 1553 188 20 10 chr1 44871655 44871827 -237321837 - AluJb SINE Alu -15 297 119 219 114 0 0 chr1 44871827 44871862 -237321802 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1553 188 20 10 chr1 44871862 44871981 -237321683 - AluJb SINE Alu -193 119 3 215 247 176 0 chr1 44872527 44872612 -237321052 + MIR SINE MIR 42 141 -67 297 282 203 5 chr1 44873146 44873348 -237320316 + MIR SINE MIR 2 243 -19 677 170 109 0 chr1 44873821 44873968 -237319696 + L1MB4 LINE L1 6000 6162 -18 367 286 117 13 chr1 44875295 44875449 -237318215 - MIR SINE MIR -19 243 74 447 274 142 19 chr1 44879691 44879903 -237313761 + MIR SINE MIR 13 250 -12 260 304 0 13 chr1 44880884 44880963 -237312701 - MIR3 SINE MIR -23 185 108 2394 78 3 0 chr1 44881726 44882019 -237311645 + AluSg SINE Alu 1 294 -16 788 269 32 28 chr1 44882313 44882562 -237311102 - MIR SINE MIR -12 250 1 303 350 56 7 chr1 44882731 44882874 -237310790 + L2 LINE L2 3123 3272 0 242 311 0 0 chr1 44883178 44883252 -237310412 - MIR SINE MIR -2 260 187 566 221 25 16 chr1 44883560 44883682 -237309982 + FLAM_A SINE Alu 1 123 -10 22 56 0 0 chr1 44883810 44883846 -237309818 + AT_rich Low_complexity Low_complexity 1 36 0 310 174 207 107 chr1 44884722 44884843 -237308821 + MER106B DNA MER1_type 1 133 -926 1763 161 13 33 chr1 44884843 44885148 -237308516 + AluJo SINE Alu 1 299 -13 224 222 79 0 chr1 44886086 44886149 -237307515 - L2 LINE L2 -5 3267 3200 23 68 0 0 chr1 44886527 44886571 -237307093 + AT_rich Low_complexity Low_complexity 1 44 0 2205 71 13 62 chr1 44886586 44886894 -237306770 - AluSx SINE Alu -19 293 1 290 232 248 0 chr1 44887794 44887919 -237305745 + MIR SINE MIR 90 245 -17 1809 152 3 36 chr1 44888031 44888334 -237305330 - AluJb SINE Alu -19 293 1 1301 131 112 9 chr1 44888623 44888837 -237304827 - MER46A DNA MER2_type 0 236 1 182 234 0 117 chr1 44888996 44889073 -237304591 + MIR SINE MIR 85 152 -56 1815 163 16 10 chr1 44889078 44889207 -237304457 + AluJb SINE Alu 1 128 -184 2292 111 0 3 chr1 44889207 44889514 -237304150 + AluSg SINE Alu 1 306 -4 1815 163 16 10 chr1 44889514 44889691 -237303973 + AluJb SINE Alu 128 309 -3 230 313 20 70 chr1 44889928 44890129 -237303535 - MIR SINE MIR -60 202 12 590 242 153 0 chr1 44890132 44890289 -237303375 - MER5A DNA MER1_type 0 189 9 974 219 25 13 chr1 44891479 44891716 -237301948 + MIR SINE MIR 1 240 -22 2335 94 0 31 chr1 44892153 44892473 -237301191 + AluSg SINE Alu 1 310 0 1886 162 10 0 chr1 44892486 44892794 -237300870 + AluJb SINE Alu 1 311 -1 1076 186 5 5 chr1 44893569 44893762 -237299902 + MER46A DNA MER2_type 44 236 0 418 241 59 35 chr1 44893784 44893954 -237299710 + L1MC5 LINE L1 7737 7910 -51 2214 105 3 0 chr1 44893980 44894265 -237299399 + AluSg SINE Alu 1 286 -24 1632 223 9 119 chr1 44894276 44894433 -237299231 + L1ME1 LINE L1 5444 5617 -549 573 178 110 25 chr1 44894433 44894551 -237299113 + FLAM_C SINE Alu 5 132 -1 1632 223 9 119 chr1 44894551 44895331 -237298333 + L1ME1 LINE L1 5617 6003 -163 3148 152 24 40 chr1 44894569 44894826 -237298838 + L1MB3 LINE L1 5570 5830 -353 2325 116 7 0 chr1 44894826 44895136 -237298528 + AluSx SINE Alu 1 312 0 3148 152 24 40 chr1 44895136 44895502 -237298162 + L1MB3 LINE L1 5830 6183 0 236 200 0 20 chr1 44896271 44896321 -237297343 - L2 LINE L2 0 3272 3224 1772 160 21 7 chr1 44896366 44896653 -237297011 + AluJo SINE Alu 1 291 -21 301 279 0 0 chr1 44896915 44897019 -237296645 + A-rich Low_complexity Low_complexity 1 104 0 879 161 21 106 chr1 44897066 44897112 -237296552 + MER20 DNA MER1_type 4 52 -167 1895 117 23 0 chr1 44897112 44897368 -237296296 - AluSq SINE Alu -51 262 1 879 161 21 106 chr1 44897368 44897510 -237296154 + MER20 DNA MER1_type 52 171 -48 2487 52 38 0 chr1 44897510 44897801 -237295863 + AluY SINE Alu 1 302 -9 879 161 21 106 chr1 44897801 44897847 -237295817 + MER20 DNA MER1_type 171 219 0 383 278 77 75 chr1 44898338 44898687 -237294977 + L2 LINE L2 1961 2310 -1004 1486 170 11 53 chr1 44898740 44899023 -237294641 + AluJb SINE Alu 4 274 -38 658 179 29 8 chr1 44899070 44899315 -237294349 + GA-rich Low_complexity Low_complexity 1 250 0 1126 138 23 6 chr1 44899367 44899541 -237294123 - AluSg/x SINE Alu -20 292 116 1656 147 32 70 chr1 44899872 44900184 -237293480 + AluJo SINE Alu 1 300 -12 2364 93 3 0 chr1 44900325 44900627 -237293037 - AluSp SINE Alu -10 303 1 2015 53 0 8 chr1 44901128 44901371 -237292293 - AluY SINE Alu -13 298 58 4658 193 89 94 chr1 44901375 44901543 -237292121 + L1MD3 LINE L1 5114 5281 -2701 2306 106 0 3 chr1 44901543 44901845 -237291819 + AluSq SINE Alu 1 301 -12 4658 193 89 94 chr1 44901845 44901960 -237291704 + L1MD3 LINE L1 5281 5395 -2587 2371 79 0 0 chr1 44901960 44902250 -237291414 + AluSq SINE Alu 1 290 -23 10574 62 5 57 chr1 44902251 44903713 -237289951 + SVA Other Other 1 1386 0 4658 193 89 94 chr1 44903713 44904096 -237289568 + L1MD3 LINE L1 5395 5779 -2203 2251 106 3 0 chr1 44904096 44904388 -237289276 + AluSp SINE Alu 3 295 -18 4658 193 89 94 chr1 44904388 44904493 -237289171 + L1MD3 LINE L1 5779 5883 -2099 1801 130 48 0 chr1 44904493 44904762 -237288902 + AluJb SINE Alu 1 282 -30 4658 193 89 94 chr1 44904762 44905097 -237288567 + L1MD3 LINE L1 5883 6218 -1764 1608 186 7 30 chr1 44905097 44905393 -237288271 - AluJb SINE Alu -23 289 1 4658 193 89 94 chr1 44905393 44905935 -237287729 + L1MD3 LINE L1 6218 6762 -1220 261 0 0 0 chr1 44905935 44905964 -237287700 + (CA)n Simple_repeat Simple_repeat 2 30 0 4658 193 89 94 chr1 44905964 44906196 -237287468 + L1MD3 LINE L1 6762 6994 -988 501 274 0 0 chr1 44906196 44906313 -237287351 + MLT1F1 LTR MaLR 1 117 -450 4658 193 89 94 chr1 44906313 44906923 -237286741 + L1MD3 LINE L1 6994 7972 -10 2194 107 30 0 chr1 44906924 44907223 -237286441 + AluSp SINE Alu 1 308 -5 580 181 11 0 chr1 44907252 44907346 -237286318 + FLAM_A SINE Alu 21 115 -27 21 36 0 0 chr1 44907358 44907386 -237286278 + AT_rich Low_complexity Low_complexity 1 28 0 1098 197 34 0 chr1 44907391 44907599 -237286065 - MER20 DNA MER1_type -4 215 1 233 267 175 0 chr1 44907719 44907839 -237285825 + HAL1b LINE L1 1193 1333 -15 2425 94 0 7 chr1 44907843 44908150 -237285514 - AluSp SINE Alu -8 305 1 228 304 113 26 chr1 44908189 44908383 -237285281 + L2 LINE L2 2472 2682 -632 2381 92 0 0 chr1 44908390 44908682 -237284982 + AluSg SINE Alu 1 292 -18 258 279 58 0 chr1 44909048 44909134 -237284530 + MIR SINE MIR 142 232 -30 285 51 0 0 chr1 44909711 44909750 -237283914 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 2352 88 0 7 chr1 44909827 44910133 -237283531 + AluY SINE Alu 1 304 -7 225 0 0 0 chr1 44910202 44910227 -237283437 + (A)n Simple_repeat Simple_repeat 1 25 0 738 146 46 23 chr1 44910397 44910527 -237283137 + AluJo SINE Alu 1 133 -169 220 264 95 66 chr1 44910945 44911070 -237282594 + MIR3 SINE MIR 27 157 -51 273 128 0 0 chr1 44911313 44911352 -237282312 + MER4E LTR ERV1 667 705 -74 2005 96 44 7 chr1 44912170 44912467 -237281197 + AluSc SINE Alu 1 307 0 29 0 0 0 chr1 44912661 44912690 -237280974 + AT_rich Low_complexity Low_complexity 1 29 0 787 137 74 103 chr1 44912695 44912775 -237280889 + AluJo SINE Alu 142 223 -89 2196 116 7 0 chr1 44912775 44913077 -237280587 + AluSq SINE Alu 2 305 -8 2141 114 0 0 chr1 44913077 44913358 -237280306 + AluSc SINE Alu 1 281 -28 202 39 0 0 chr1 44913358 44913384 -237280280 + (CAA)n Simple_repeat Simple_repeat 2 180 0 787 137 74 103 chr1 44913384 44913476 -237280188 + AluJo SINE Alu 221 311 -1 2412 103 0 0 chr1 44913701 44914011 -237279653 + AluSg SINE Alu 1 310 0 2383 87 6 31 chr1 44914118 44914439 -237279225 + AluSq SINE Alu 1 313 0 762 109 0 0 chr1 44914750 44914860 -237278804 - HY1 scRNA scRNA -1 111 2 535 309 73 0 chr1 44915183 44915361 -237278303 - MIR SINE MIR -18 244 54 390 326 94 6 chr1 44915862 44916036 -237277628 - MIR SINE MIR -45 217 30 592 361 19 5 chr1 44916175 44916380 -237277284 + MIR SINE MIR 49 256 -6 2265 95 3 3 chr1 44916846 44917152 -237276512 - AluSx SINE Alu -6 306 1 436 266 220 19 chr1 44917174 44917388 -237276276 + L2 LINE L2 3052 3308 -5 1993 116 32 3 chr1 44917543 44917849 -237275815 + AluSq SINE Alu 1 313 0 2157 113 7 0 chr1 44917978 44918270 -237275394 + AluSp SINE Alu 1 294 -19 2221 98 23 10 chr1 44918271 44918577 -237275087 + AluSg SINE Alu 1 310 0 533 265 119 41 chr1 44918666 44918755 -237274909 + MIR SINE MIR 18 99 -163 1569 168 10 45 chr1 44918755 44919064 -237274600 - AluJo SINE Alu -14 298 1 533 265 119 41 chr1 44919064 44919193 -237274471 + MIR SINE MIR 99 253 -9 2492 60 0 7 chr1 44919343 44919643 -237274021 + AluY SINE Alu 1 298 -13 2497 64 13 0 chr1 44921461 44921759 -237271905 + AluSp SINE Alu 1 302 -11 768 187 0 0 chr1 44921976 44922099 -237271565 - AluSq/x SINE Alu -188 125 3 601 173 53 133 chr1 44922217 44922281 -237271383 - MLT1C LTR MaLR 0 467 399 1685 142 56 40 chr1 44922281 44922584 -237271080 + AluSg SINE Alu 1 308 -2 601 173 53 133 chr1 44922584 44922744 -237270920 - MLT1C LTR MaLR -68 399 261 1376 73 0 0 chr1 44922744 44922908 -237270756 - AluSg SINE Alu -144 166 3 1048 214 123 43 chr1 44922913 44923029 -237270635 - AluJo SINE Alu -4 298 193 2439 106 0 0 chr1 44923029 44923341 -237270323 + AluSx SINE Alu 1 312 0 1048 214 123 43 chr1 44923341 44923500 -237270164 - AluJo SINE Alu -109 193 1 247 382 40 7 chr1 44923503 44923655 -237270009 + L2 LINE L2 2216 2372 -942 205 234 91 52 chr1 44923674 44923751 -237269913 - MIR3 SINE MIR -15 193 114 878 186 0 24 chr1 44924132 44924299 -237269365 - MIR SINE MIR -26 236 74 1569 141 19 83 chr1 44924309 44924641 -237269023 - AluJo SINE Alu 0 312 1 181 114 200 0 chr1 44924768 44924803 -237268861 + MER5A DNA MER1_type 55 96 -93 2329 75 7 0 chr1 44924813 44925105 -237268559 - AluSg SINE Alu -16 294 1 187 200 0 29 chr1 44925114 44925149 -237268515 + MER5A DNA MER1_type 156 189 0 471 240 44 37 chr1 44925513 44925720 -237267944 - MIR SINE MIR 0 262 8 384 288 27 9 chr1 44926608 44926719 -237266945 + MIR SINE MIR 75 187 -75 187 229 300 0 chr1 44927003 44927073 -237266591 + MIR SINE MIR 41 131 -131 337 284 55 16 chr1 44927491 44927618 -237266046 + MIR SINE MIR 6 137 -125 2118 131 0 0 chr1 44927782 44928072 -237265592 - AluJb SINE Alu -22 290 1 424 265 146 7 chr1 44928229 44928402 -237265262 - MIR SINE MIR -50 212 17 350 303 110 7 chr1 44932646 44932791 -237260873 - MIR3 SINE MIR -48 160 1 278 243 14 14 chr1 44933233 44933307 -237260357 + L2 LINE L2 3233 3306 -7 192 167 28 0 chr1 44933523 44933559 -237260105 + MIR SINE MIR 110 146 -116 31 0 0 0 chr1 44934886 44934917 -237258747 + GC_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr1 44935104 44935129 -237258535 + GC_rich Low_complexity Low_complexity 1 25 0 426 180 60 30 chr1 44935726 44935826 -237257838 + MIR SINE MIR 102 204 -58 846 181 7 0 chr1 44936110 44936259 -237257405 - FRAM SINE Alu -21 155 6 267 257 36 100 chr1 44936899 44936945 -237256719 - LTR67 LTR ERVL 0 557 510 2384 60 0 4 chr1 44936945 44937262 -237256402 + AluY SINE Alu 1 316 0 267 257 36 100 chr1 44937262 44937354 -237256310 - LTR67 LTR ERVL -47 510 427 503 260 16 8 chr1 44937524 44937651 -237256013 + L2 LINE L2 3167 3294 -19 1328 103 10 16 chr1 44937673 44937867 -237255797 - AluSx SINE Alu 0 312 120 1169 46 33 0 chr1 44937891 44938044 -237255620 - L1PA5 LINE L1 0 6154 5997 736 95 0 0 chr1 44938046 44938141 -237255523 - AluSx SINE Alu -179 133 39 1860 149 28 10 chr1 44938141 44938430 -237255234 - AluJo SINE Alu -10 302 9 1934 170 50 22 chr1 44938468 44938832 -237254832 - THE1C LTR MaLR 0 375 2 23 86 0 0 chr1 44939401 44939459 -237254205 + AT_rich Low_complexity Low_complexity 1 58 0 504 171 0 0 chr1 44939553 44939641 -237254023 - AluSg SINE Alu 0 312 225 838 139 0 0 chr1 44939661 44939776 -237253888 - AluSg SINE Alu -154 156 42 2380 114 0 9 chr1 44939842 44940157 -237253507 - AluSx SINE Alu 0 312 1 186 133 0 0 chr1 44940158 44940188 -237253476 + (T)n Simple_repeat Simple_repeat 1 30 0 1635 153 31 75 chr1 44940257 44940577 -237253087 - AluJb SINE Alu -4 308 3 2685 227 25 17 chr1 44940578 44941286 -237252378 - HAL1 LINE L1 -418 2089 1376 1336 231 42 130 chr1 44941301 44942060 -237251604 + MER21B LTR ERV1 23 714 -149 207 0 0 0 chr1 44942093 44942116 -237251548 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2340 85 3 0 chr1 44942118 44942411 -237251253 - AluY SINE Alu -17 294 1 2000 151 0 10 chr1 44942412 44942711 -237250953 - AluSx SINE Alu -16 296 1 681 134 7 141 chr1 44942887 44943036 -237250628 - FLAM_C SINE Alu -13 130 2 1211 231 68 138 chr1 44943068 44943383 -237250281 - HAL1 LINE L1 -1389 1118 782 698 191 56 0 chr1 44943383 44943509 -237250155 + FLAM_A SINE Alu 1 133 0 1211 231 68 138 chr1 44943509 44943705 -237249959 - HAL1 LINE L1 -1725 782 574 2207 102 0 35 chr1 44943705 44943885 -237249779 - AluSq SINE Alu -1 312 146 2430 69 0 30 chr1 44943885 44944189 -237249475 - AluY SINE Alu -16 295 1 2207 102 0 35 chr1 44944189 44944321 -237249343 - AluSq SINE Alu -167 146 11 1211 231 68 138 chr1 44944321 44944887 -237248777 - HAL1 LINE L1 -1933 574 116 266 164 14 41 chr1 44944884 44944957 -237248707 - L1MB3 LINE L1 0 6183 6113 * 1424 186 43 75 chr1 44944957 44945092 -237248572 + AluJb SINE Alu 1 139 -173 2177 110 0 3 chr1 44945092 44945384 -237248280 + AluSx SINE Alu 7 297 -15 1424 186 43 75 chr1 44945384 44945570 -237248094 + AluJb SINE Alu 139 312 0 7573 45 4 40 chr1 44945625 44945658 -237248006 - SVA Other Other -799 1386 1353 185 0 40 0 chr1 44945658 44945683 -237247981 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7573 45 4 40 chr1 44945683 44947248 -237246416 - SVA Other Other -832 1353 3 300 27 0 0 chr1 44947248 44947285 -237246379 + (GGGAGA)n Simple_repeat Simple_repeat 2 38 0 2217 107 0 19 chr1 44947295 44947603 -237246061 - AluSx SINE Alu -7 305 4 658 116 35 168 chr1 44947603 44947696 -237245968 - L1M4 LINE L1 -682 5496 5392 1833 151 0 77 chr1 44947696 44947894 -237245770 - AluSx SINE Alu 0 312 100 2179 122 0 7 chr1 44947894 44948209 -237245455 - AluSq SINE Alu 0 313 1 2037 130 7 3 chr1 44948211 44948504 -237245160 - AluSx SINE Alu -18 294 1 1833 151 0 77 chr1 44948504 44948640 -237245024 - AluSx SINE Alu -213 99 1 658 116 35 168 chr1 44948640 44948756 -237244908 - L1M4 LINE L1 -786 5392 5325 981 184 0 30 chr1 44948765 44948933 -237244731 - AluJb SINE Alu -14 298 136 1708 157 10 39 chr1 44948936 44949099 -237244565 - AluJo SINE Alu -16 296 145 1995 158 0 3 chr1 44949099 44949396 -237244268 - AluSx SINE Alu -16 296 1 1708 157 10 39 chr1 44949396 44949537 -237244127 - AluJo SINE Alu -167 145 1 308 145 72 0 chr1 44949542 44949611 -237244053 - L1M4 LINE L1 -847 5327 5254 27 0 0 0 chr1 44949615 44949642 -237244022 + AT_rich Low_complexity Low_complexity 1 27 0 2033 105 56 14 chr1 44949690 44949975 -237243689 - AluSx SINE Alu -14 298 2 243 275 75 12 chr1 44950021 44950101 -237243563 - HAL1 LINE L1 -2421 86 2 1713 183 11 0 chr1 44950128 44950407 -237243257 - AluSx SINE Alu -28 284 3 635 135 0 9 chr1 44950444 44950555 -237243109 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 1941 143 34 0 chr1 44950557 44950851 -237242813 - AluSc SINE Alu -5 304 1 204 328 0 0 chr1 44950965 44951029 -237242635 + GA-rich Low_complexity Low_complexity 4 67 0 2391 102 3 3 chr1 44951269 44951582 -237242082 + AluSq SINE Alu 1 313 0 346 266 156 0 chr1 44951608 44951762 -237241902 + MIR SINE MIR 79 256 -6 2291 123 0 0 chr1 44951765 44952074 -237241590 - AluSc SINE Alu 0 309 1 269 261 76 59 chr1 44952113 44952232 -237241432 - L2 LINE L2 -508 2806 2686 495 99 0 0 chr1 44952677 44952748 -237240916 - MER41A LTR ERV1 -86 468 398 852 208 67 122 chr1 44953012 44953120 -237240544 - MER63B DNA MER1_type -626 436 324 1867 156 10 16 chr1 44953120 44953434 -237240230 + AluJo SINE Alu 1 312 0 2495 85 0 0 chr1 44953435 44953741 -237239923 + AluY SINE Alu 1 306 -5 852 208 67 122 chr1 44953741 44953844 -237239820 - MER63B DNA MER1_type -738 324 217 2005 167 3 0 chr1 44953844 44954149 -237239515 + AluJb SINE Alu 1 306 -6 852 208 67 122 chr1 44954149 44954255 -237239409 - MER63B DNA MER1_type -845 217 145 2191 106 0 3 chr1 44954255 44954573 -237239091 - AluSq SINE Alu 0 317 1 852 208 67 122 chr1 44954573 44954711 -237238953 - MER63B DNA MER1_type -917 145 1 383 329 40 36 chr1 44955144 44955369 -237238295 + MIR SINE MIR 37 262 0 203 189 0 0 chr1 44955893 44955930 -237237734 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 507 103 0 0 chr1 44955993 44956061 -237237603 - PABL_A LTR ERV1 -342 318 251 1912 107 96 14 chr1 44956062 44956342 -237237322 - AluSx SINE Alu -7 305 3 287 213 27 0 chr1 44956347 44956422 -237237242 + Charlie8 DNA MER1_type 83 159 -2258 2405 97 0 0 chr1 44956468 44956767 -237236897 + AluSx SINE Alu 1 299 -13 25 51 0 0 chr1 44956792 44956831 -237236833 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr1 44956947 44956973 -237236691 + AT_rich Low_complexity Low_complexity 1 26 0 1795 149 39 3 chr1 44956995 44957277 -237236387 - AluJb SINE Alu -20 292 1 189 0 0 0 chr1 44957334 44957355 -237236309 + (TTCTCC)n Simple_repeat Simple_repeat 3 23 0 741 180 8 0 chr1 44957357 44957479 -237236185 - AluJo SINE Alu -33 279 157 * 784 124 9 9 chr1 44957474 44957587 -237236077 - AluJo SINE Alu -199 113 1 410 273 187 11 chr1 44957758 44958036 -237235628 - L2 LINE L2 -744 2570 2244 780 127 0 0 chr1 44958162 44958272 -237235392 + AluSq/x SINE Alu 2 111 -201 282 116 0 0 chr1 44958272 44958315 -237235349 + AluSp/q SINE Alu 253 295 -8 1867 134 10 43 chr1 44958326 44958631 -237235033 + AluJb SINE Alu 3 297 -15 534 255 130 10 chr1 44959214 44959422 -237234242 - MIR SINE MIR -9 253 21 396 309 72 58 chr1 44959473 44959958 -237233706 + L2 LINE L2 2449 2940 -374 386 315 194 0 chr1 44960642 44960807 -237232857 + MIR SINE MIR 51 247 -15 206 283 17 44 chr1 44961298 44961478 -237232186 + (TATG)n Simple_repeat Simple_repeat 3 177 0 * 257 212 0 76 chr1 44961368 44961500 -237232164 + (TG)n Simple_repeat Simple_repeat 1 122 0 2394 123 0 18 chr1 44961558 44961900 -237231764 + MER1B DNA MER1_type 1 336 -1 194 358 15 0 chr1 44962735 44962802 -237230862 + L2 LINE L2 2981 3048 -224 588 267 56 15 chr1 44962810 44963005 -237230659 + MLT1J LTR MaLR 9 211 -300 766 215 76 0 chr1 44963128 44963300 -237230364 + AluJb SINE Alu 120 304 -8 658 178 29 8 chr1 44963325 44963566 -237230098 + GA-rich Low_complexity Low_complexity 1 246 0 1145 138 23 6 chr1 44963618 44963792 -237229872 - AluSg/x SINE Alu -20 290 114 1688 147 32 70 chr1 44964123 44964435 -237229229 + AluJo SINE Alu 1 300 -12 2384 93 3 0 chr1 44964576 44964878 -237228786 - AluSp SINE Alu -10 303 1 196 306 179 22 chr1 44965117 44965251 -237228413 - MIR3 SINE MIR -47 161 7 1911 53 0 8 chr1 44965379 44965622 -237228042 - AluY SINE Alu -13 298 58 1051 195 46 28 chr1 44965626 44965794 -237227870 + L1M4 LINE L1 5114 5290 -856 2178 106 0 3 chr1 44965794 44966096 -237227568 + AluSq SINE Alu 1 301 -12 1051 195 46 28 chr1 44966096 44966209 -237227455 + L1M4 LINE L1 5290 5400 -746 2229 75 27 0 chr1 44966211 44966503 -237227161 + AluSx SINE Alu 1 300 -12 372 325 80 17 chr1 44966786 44967023 -237226641 + L2 LINE L2 872 1123 -2191 1481 150 30 11 chr1 44967025 44967291 -237226373 + AluJo SINE Alu 4 274 -38 2318 82 0 0 chr1 44967293 44967599 -237226065 - AluY SINE Alu -5 306 1 1781 138 0 43 chr1 44968087 44968392 -237225272 - AluSx SINE Alu -20 292 1 269 232 43 0 chr1 44968398 44968467 -237225197 - L2 LINE L2 -234 3079 3008 931 178 6 0 chr1 44968472 44968629 -237225035 - AluJo SINE Alu -154 158 1 927 281 10 0 chr1 44968870 44969069 -237224595 + LTR33 LTR ERVL 15 215 -306 400 277 9 45 chr1 44969117 44969229 -237224435 + LTR33 LTR ERVL 312 419 -102 515 229 45 65 chr1 44969229 44969455 -237224209 - L1ME3A LINE L1 -193 5969 5732 477 283 51 0 chr1 44969464 44969602 -237224062 - L1ME3A LINE L1 -499 5671 5527 182 37 37 0 chr1 44969680 44969707 -237223957 + (TTTCC)n Simple_repeat Simple_repeat 4 31 0 959 188 24 0 chr1 44969713 44969883 -237223781 - AluJb SINE Alu -10 302 129 713 203 25 97 chr1 44969889 44970024 -237223640 - L1M4 LINE L1 -3579 2567 2424 539 164 60 67 chr1 44970024 44970158 -237223506 - FLAM_A SINE Alu 0 133 1 713 203 25 97 chr1 44970158 44970212 -237223452 - L1M4 LINE L1 -3722 2424 2368 2128 89 0 0 chr1 44970212 44970520 -237223144 - AluSg SINE Alu 0 309 2 2343 55 0 19 chr1 44970528 44970839 -237222825 - AluY SINE Alu -6 305 1 713 203 25 97 chr1 44970839 44970958 -237222706 - L1M4 LINE L1 -3785 2361 2271 723 210 62 83 chr1 44970966 44971304 -237222360 - L1MC4 LINE L1 0 8042 7712 1908 141 0 7 chr1 44971304 44971595 -237222069 + AluJb SINE Alu 1 289 -23 214 0 0 98 chr1 44971604 44971655 -237222009 + (TCTCCC)n Simple_repeat Simple_repeat 5 50 0 184 53 53 26 chr1 44971817 44971855 -237221809 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 1423 262 44 25 chr1 44971995 44972630 -237221034 + MER20B DNA MER1_type 1 677 -106 1533 114 0 0 chr1 44972630 44972840 -237220824 + AluSx SINE Alu 1 210 -102 927 286 38 26 chr1 44972946 44973415 -237220249 - L1 LINE L1 -2919 3227 2753 735 311 6 6 chr1 44973923 44974254 -237219410 - L1P LINE L1 -3378 2768 2438 339 306 50 33 chr1 44976042 44976222 -237217442 + L1 LINE L1 2864 3046 -3100 33 25 0 0 chr1 44976386 44976426 -237217238 + AT_rich Low_complexity Low_complexity 1 40 0 455 290 70 3 chr1 44976450 44976736 -237216928 + L1 LINE L1 3040 3344 -2802 32 0 0 0 chr1 44976957 44976989 -237216675 + AT_rich Low_complexity Low_complexity 1 32 0 32 0 0 0 chr1 44979147 44979179 -237214485 + AT_rich Low_complexity Low_complexity 1 32 0 940 251 34 22 chr1 44979446 44979769 -237213895 + L1MA9 LINE L1 5605 5931 -381 26 0 0 0 chr1 44980427 44980453 -237213211 + AT_rich Low_complexity Low_complexity 1 26 0 314 272 95 16 chr1 44982439 44982674 -237210990 + HERVK14 LTR ERVK 2140 2193 -3723 701 278 35 38 chr1 44982829 44983154 -237210510 + HERVK14 LTR ERVK 2358 2935 -3010 374 274 101 84 chr1 44983255 44983551 -237210113 + L1MA1 LINE L1 5721 6021 -145 28 29 0 0 chr1 44983615 44983650 -237210014 + AT_rich Low_complexity Low_complexity 1 35 0 1254 267 15 7 chr1 44985174 44985578 -237208086 - L1 LINE L1 -2196 3950 3544 534 310 34 81 chr1 44987572 44988137 -237205527 + L1 LINE L1 1672 2209 -4640 362 234 106 8 chr1 44988461 44988610 -237205054 - AluSq/x SINE Alu -198 105 4 198 0 0 0 chr1 44988842 44988864 -237204800 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1614 236 0 0 chr1 44989135 44989508 -237204156 + L1 LINE L1 4187 4559 -2289 231 186 0 0 chr1 44989648 44989691 -237203973 + L2 LINE L2 1730 1772 -1542 1832 214 103 66 chr1 44989713 44989760 -237203904 - L2 LINE L2 -1465 1849 1805 1881 155 7 0 chr1 44989760 44990070 -237203594 + AluJb SINE Alu 1 312 0 1832 214 103 66 chr1 44990070 44990297 -237203367 - L2 LINE L2 -1509 1805 1588 2121 99 3 0 chr1 44990297 44990626 -237203038 + AluSg SINE Alu 1 330 0 1832 214 103 66 chr1 44990626 44991000 -237202664 - L2 LINE L2 -1726 1588 1175 426 151 0 0 chr1 44993654 44993727 -237199937 - FLAM_C SINE Alu -1 142 70 274 296 237 18 chr1 44993819 44993988 -237199676 + L3 LINE CR1 1347 1552 -25 1664 163 24 0 chr1 44994206 44994577 -237199087 + AluJo SINE Alu 11 388 0 1795 89 29 4 chr1 44994601 44994847 -237198817 + AluSx SINE Alu 1 252 -60 306 0 0 0 chr1 44996746 44996780 -237196884 + (TCTG)n Simple_repeat Simple_repeat 2 35 0 230 167 0 0 chr1 44996797 44996833 -237196831 + MLT2A1 LTR ERVL 403 438 -6 311 200 37 82 chr1 44996970 44997105 -237196559 + L2 LINE L2 3138 3266 -6 663 186 0 9 chr1 44997823 44997936 -237195728 - FLAM_A SINE Alu -23 119 8 388 93 0 0 chr1 44997936 44997990 -237195674 - L1MB3 LINE L1 -41 6142 6089 246 271 0 0 chr1 44998047 44998106 -237195558 - LTR24B LTR ERV1 -248 328 270 2018 118 3 3 chr1 44998106 44998403 -237195261 - AluSx SINE Alu -15 297 1 647 178 56 0 chr1 44998403 44998583 -237195081 - L1MB3 LINE L1 -78 6105 5798 303 321 46 0 chr1 44998607 44998716 -237194948 + L2 LINE L2 3175 3288 -25 312 240 54 70 chr1 44998721 44998850 -237194814 - MIR SINE MIR -128 134 8 391 167 35 11 chr1 44999002 44999176 -237194488 + (TG)n Simple_repeat Simple_repeat 1 178 0 23 0 0 0 chr1 45000890 45000913 -237192751 + AT_rich Low_complexity Low_complexity 1 23 0 863 304 13 13 chr1 45002584 45002972 -237190692 - L1 LINE L1 -744 5402 5015 327 25 0 0 chr1 45003006 45003046 -237190618 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1718 271 14 8 chr1 45003716 45004206 -237189458 - L1MA2 LINE L1 -374 5930 5438 2216 256 13 7 chr1 45007152 45007764 -237185900 - L1MA2 LINE L1 -374 5930 5315 541 237 8 8 chr1 45008261 45008392 -237185272 + L1P2 LINE L1 5449 5579 -576 21 0 0 0 chr1 45010260 45010281 -237183383 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 45010810 45010835 -237182829 + GC_rich Low_complexity Low_complexity 1 25 0 2231 109 0 3 chr1 45011039 45011350 -237182314 + AluSq SINE Alu 1 310 -3 478 226 94 19 chr1 45012932 45013091 -237180573 - FRAM SINE Alu -6 170 1 2416 247 25 21 chr1 45017729 45018628 -237175036 - L1MA9 LINE L1 -381 5931 5030 7473 278 10 7 chr1 45018905 45021433 -237172231 + L1M1 LINE L1 3520 6052 -1513 339 25 0 0 chr1 45023971 45024011 -237169653 + (CA)n Simple_repeat Simple_repeat 1 40 0 371 187 67 0 chr1 45024500 45024575 -237169089 + Tigger7 DNA MER2_type 28 107 -626 249 174 105 105 chr1 45024782 45024868 -237168796 + Tigger7 DNA MER2_type 420 505 -228 287 299 28 0 chr1 45025154 45025261 -237168403 + L1MEc LINE L1 1564 1673 -4723 189 0 0 0 chr1 45026129 45026150 -237167514 + (CCCCCT)n Simple_repeat Simple_repeat 2 22 0 425 237 70 9 chr1 45026407 45026521 -237167143 + FLAM_C SINE Alu 11 131 -12 2107 105 3 3 chr1 45026752 45027046 -237166618 + AluSx SINE Alu 1 294 -18 342 0 0 0 chr1 45027385 45027423 -237166241 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 0 0 0 chr1 45027422 45027444 -237166220 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 280 330 10 0 chr1 45027730 45027827 -237165837 + MIR SINE MIR 37 134 -128 2158 105 0 10 chr1 45027882 45028195 -237165469 + AluSg SINE Alu 1 310 0 293 240 27 0 chr1 45028665 45028740 -237164924 - MER91A DNA MER1_type 0 196 120 1843 282 12 11 chr1 45029645 45030591 -237163073 + L1M1 LINE L1 6128 7075 -644 575 288 72 51 chr1 45030594 45031231 -237162433 - L1PBa LINE L1 -4322 2061 1292 3082 145 54 18 chr1 45032359 45032862 -237160802 - MER21-int LTR ERV1 -1313 2878 2358 1605 185 0 3 chr1 45032864 45033150 -237160514 + AluJo SINE Alu 1 285 -27 1861 139 13 3 chr1 45033166 45033467 -237160197 + AluSx SINE Alu 3 306 -6 1603 130 13 4 chr1 45033521 45033759 -237159905 - MER21-int LTR ERV1 -1821 2370 2131 731 162 0 22 chr1 45034095 45034231 -237159433 - FLAM_C SINE Alu 0 133 1 27 0 0 0 chr1 45034431 45034458 -237159206 + GC_rich Low_complexity Low_complexity 1 27 0 2289 80 3 0 chr1 45034458 45034757 -237158907 - AluY SINE Alu -11 300 1 745 144 17 0 chr1 45034801 45034919 -237158745 - FLAM_C SINE Alu -13 120 1 801 288 82 20 chr1 45035199 45035568 -237158096 + L2 LINE L2 2767 3167 -146 23 33 0 0 chr1 45037469 45037499 -237156165 + AT_rich Low_complexity Low_complexity 1 30 0 226 250 83 0 chr1 45037518 45037578 -237156086 - tRNA-Ala-GCG tRNA tRNA -9 66 2 225 304 27 9 chr1 45037733 45037845 -237155819 - HAL1 LINE L1 -854 1653 1540 291 258 57 32 chr1 45037848 45037972 -237155692 - HAL1 LINE L1 -1161 1346 1220 416 283 9 0 chr1 45038007 45038113 -237155551 - FLAM_A SINE Alu -22 120 14 445 281 0 47 chr1 45040864 45040992 -237152672 - MIR SINE MIR -114 148 27 426 151 0 0 chr1 45040999 45041072 -237152592 - FLAM_C SINE Alu -1 142 70 207 302 105 0 chr1 45041169 45041255 -237152409 - MIR SINE MIR -58 150 56 1352 101 56 0 chr1 45042625 45042823 -237150841 + AluSp SINE Alu 86 294 -19 711 295 35 60 chr1 45042824 45043288 -237150376 - L2 LINE L2 -343 2971 2520 2271 110 0 0 chr1 45043327 45043636 -237150028 - AluSc SINE Alu 0 309 1 647 168 18 0 chr1 45043640 45043753 -237149911 - AluJ SINE Alu -6 306 192 842 156 0 0 chr1 45043753 45043894 -237149770 - AluJ SINE Alu -170 142 2 2221 93 3 7 chr1 45044088 45044390 -237149274 - AluSp SINE Alu -12 301 1 24 0 0 0 chr1 45044494 45044518 -237149146 + AT_rich Low_complexity Low_complexity 1 24 0 731 185 23 8 chr1 45044519 45044649 -237149015 - AluJb SINE Alu -179 133 2 302 340 0 0 chr1 45044652 45044805 -237148859 + L1 LINE L1 4192 4344 -1802 21 0 0 0 chr1 45044855 45044876 -237148788 + AT_rich Low_complexity Low_complexity 1 21 0 3520 98 6 10 chr1 45044881 45045371 -237148293 - LTR10D LTR ERV1 0 513 26 1029 271 14 34 chr1 45045471 45045763 -237147901 + L2 LINE L2 2416 2701 -613 2064 96 0 13 chr1 45045788 45046089 -237147575 + AluSx SINE Alu 1 297 -15 790 132 0 9 chr1 45046089 45046203 -237147461 - MLT1B LTR MaLR -32 358 246 510 171 0 0 chr1 45046203 45046285 -237147379 - AluS SINE Alu -226 87 6 1013 141 22 43 chr1 45046287 45046472 -237147192 - MLT1B LTR MaLR -208 182 2 3551 91 11 0 chr1 45046497 45046968 -237146696 - PABL_B LTR ERV1 0 667 192 2459 55 7 7 chr1 45046968 45047277 -237146387 + AluY SINE Alu 1 309 -2 6278 184 19 28 chr1 45047277 45047580 -237146084 + MER21-int LTR ERV1 1228 1532 -2659 1769 93 100 4 chr1 45047580 45047849 -237145815 + AluSx SINE Alu 1 295 -17 6278 184 19 28 chr1 45047849 45047861 -237145803 + MER21-int LTR ERV1 1532 1543 -2648 1703 172 0 13 chr1 45047861 45048164 -237145500 + AluJo SINE Alu 1 299 -13 6278 184 19 28 chr1 45048164 45049000 -237144664 + MER21-int LTR ERV1 1543 2370 -1821 1391 102 0 53 chr1 45049054 45049280 -237144384 - AluSg/x SINE Alu -6 306 93 1055 271 4 8 chr1 45049511 45049762 -237143902 - MIR SINE MIR -1 261 12 2323 90 0 0 chr1 45050074 45050375 -237143289 - AluSx SINE Alu -11 301 1 1681 174 0 16 chr1 45050503 45050808 -237142856 - AluJo SINE Alu -12 300 1 2211 117 0 0 chr1 45050817 45051125 -237142539 - AluSx SINE Alu -4 308 1 2049 127 0 13 chr1 45051130 45051438 -237142226 - AluSq SINE Alu -9 304 1 193 174 22 43 chr1 45051931 45051977 -237141687 - L2 LINE L2 -82 3190 3146 1747 157 7 7 chr1 45052003 45052302 -237141362 + AluJb SINE Alu 1 299 -13 2184 119 0 0 chr1 45052316 45052626 -237141038 + AluSx SINE Alu 1 310 -2 290 284 63 21 chr1 45052760 45052855 -237140809 - MLT1J LTR MaLR -91 420 322 300 237 107 46 chr1 45053559 45053690 -237139974 - L2 LINE L2 -1 3271 3133 1956 157 89 197 chr1 45053692 45053825 -237139839 + MER82 DNA MER2_type 1 147 -506 429 71 0 0 chr1 45053825 45053881 -237139783 - AluSx SINE Alu -15 297 242 4452 114 8 22 chr1 45053882 45054504 -237139160 - LTR9B LTR ERV1 0 644 30 2226 81 13 3 chr1 45054504 45054802 -237138862 - AluSp SINE Alu -12 301 1 4452 114 8 22 chr1 45054802 45054828 -237138836 - LTR9B LTR ERV1 -614 30 5 1558 154 0 4 chr1 45054830 45055077 -237138587 - AluSx SINE Alu -66 246 1 1956 157 89 197 chr1 45055077 45055252 -237138412 + MER82 DNA MER2_type 148 340 -313 1165 206 141 28 chr1 45055252 45055607 -237138057 - MSTD LTR MaLR 0 396 2 1956 157 89 197 chr1 45055607 45055834 -237137830 + MER82 DNA MER2_type 340 590 -63 1584 97 5 0 chr1 45055834 45056083 -237137581 + L1PB1 LINE L1 5928 6177 0 2206 110 0 0 chr1 45056088 45056388 -237137276 + AluSx SINE Alu 1 300 -12 1956 157 89 197 chr1 45056388 45056515 -237137149 + MER82 DNA MER2_type 594 653 0 6098 203 20 30 chr1 45056695 45057881 -237135783 - MER21A-int LTR ERV1 -3016 1175 1 2810 184 42 33 chr1 45057881 45058423 -237135241 - MER21A LTR ERV1 0 931 385 1528 110 40 4 chr1 45058425 45058652 -237135012 - AluSc SINE Alu -74 235 1 1010 141 0 52 chr1 45058668 45058743 -237134921 + FRAM SINE Alu 1 78 -234 2114 132 10 75 chr1 45058743 45058895 -237134769 - THE1C LTR MaLR 0 375 215 2040 123 10 0 chr1 45058895 45059197 -237134467 - AluSx SINE Alu -7 305 1 2114 132 10 75 chr1 45059197 45059445 -237134219 - THE1C LTR MaLR -160 215 1 1010 141 0 52 chr1 45059445 45059561 -237134103 + FRAM SINE Alu 78 174 -2 191 236 0 73 chr1 45059630 45059685 -237133979 + MIR SINE MIR 180 230 -32 9973 280 12 11 chr1 45060251 45065025 -237128639 + L1MA9 LINE L1 1788 6633 -381 481 274 173 5 chr1 45065569 45065766 -237127898 - MIR SINE MIR 0 262 33 188 247 0 96 chr1 45065915 45065988 -237127676 - MIR3 SINE MIR -53 155 90 2774 165 32 8 chr1 45067153 45067680 -237125984 - MER50 LTR ERV1 -193 541 2 521 162 126 0 chr1 45067853 45067964 -237125700 + FLAM_C SINE Alu 14 138 -5 2552 143 89 32 chr1 45068074 45068578 -237125086 - MER21A LTR ERV1 0 931 399 881 113 44 25 chr1 45068585 45068745 -237124919 - MER21A LTR ERV1 -768 163 1 3773 133 63 65 chr1 45068857 45068961 -237124703 - MER21A-int LTR ERV1 -52 4139 4036 658 178 23 0 chr1 45068961 45069090 -237124574 - FLAM_C SINE Alu -1 132 1 3773 133 63 65 chr1 45069090 45069481 -237124183 - MER21A-int LTR ERV1 -155 4036 3646 2335 89 7 7 chr1 45069481 45069783 -237123881 - AluSq SINE Alu -11 302 1 3773 133 63 65 chr1 45069783 45070297 -237123367 - MER21A-int LTR ERV1 -545 3646 3072 22 0 0 0 chr1 45070298 45070320 -237123344 + AT_rich Low_complexity Low_complexity 1 22 0 740 75 37 0 chr1 45070327 45070434 -237123230 - HY1 scRNA scRNA -1 111 1 448 250 19 9 chr1 45070438 45070530 -237123134 - MER21A-int LTR ERV1 -1109 3082 2987 2172 123 3 0 chr1 45070530 45070822 -237122842 - AluSx SINE Alu -18 294 2 448 250 19 9 chr1 45070822 45070837 -237122827 - MER21A-int LTR ERV1 -1204 2987 2974 1240 277 6 119 chr1 45070838 45071166 -237122498 - AluSx SINE Alu -11 291 1 10316 32 12 155 chr1 45071489 45073106 -237120558 + SVA Other Other 1 1386 0 2326 108 0 0 chr1 45073127 45073422 -237120242 + AluSx SINE Alu 1 295 -17 577 181 0 47 chr1 45073631 45073651 -237120013 - MER69A DNA AcHobo -2404 122 103 2253 105 7 3 chr1 45073651 45073956 -237119708 + AluSq SINE Alu 3 308 -5 577 181 0 47 chr1 45073956 45074062 -237119602 - MER69A DNA AcHobo -2423 103 2 25 0 0 0 chr1 45074446 45074471 -237119193 + AT_rich Low_complexity Low_complexity 1 25 0 1522 129 5 0 chr1 45074567 45074777 -237118887 - AluSg/x SINE Alu -17 293 83 464 285 22 0 chr1 45074812 45074949 -237118715 - L2 LINE L2 -590 2724 2585 236 200 106 0 chr1 45075065 45075150 -237118514 - L2 LINE L2 -236 3036 2943 280 293 26 43 chr1 45075252 45075368 -237118296 - L2 LINE L2 -529 2785 2672 2533 83 0 6 chr1 45075502 45075815 -237117849 + AluSp SINE Alu 3 313 0 1748 154 7 11 chr1 45075839 45076118 -237117546 + AluJo SINE Alu 20 297 -15 761 181 8 0 chr1 45076188 45076315 -237117349 + FLAM_A SINE Alu 1 128 -5 228 320 31 21 chr1 45076378 45076475 -237117189 - MIR3 SINE MIR -40 168 71 180 0 0 0 chr1 45077174 45077194 -237116470 + (GGCTG)n Simple_repeat Simple_repeat 4 23 0 2458 66 3 0 chr1 45078974 45079262 -237114402 - AluSp SINE Alu -3 310 22 186 336 172 15 chr1 45079524 45079658 -237114006 - MIR3 SINE MIR -47 161 7 578 345 17 0 chr1 45079965 45080139 -237113525 + MER91A DNA MER1_type 2 178 -18 349 196 185 0 chr1 45080827 45080919 -237112745 - L2 LINE L2 -5 3308 3200 * 400 325 78 5 chr1 45080917 45081108 -237112556 - MIR SINE MIR -43 219 15 1251 165 98 13 chr1 45081994 45082230 -237111434 - AluJb SINE Alu -56 256 1 210 345 60 9 chr1 45082251 45082367 -237111297 - MIR SINE MIR -63 145 24 400 264 52 26 chr1 45082670 45082825 -237110839 + MER63A DNA MER1_type 52 210 0 249 301 54 0 chr1 45082850 45082943 -237110721 - MIR3 SINE MIR -7 201 104 707 246 42 51 chr1 45083057 45083293 -237110371 - MIR SINE MIR -17 245 12 23 0 0 0 chr1 45083517 45083540 -237110124 + AT_rich Low_complexity Low_complexity 1 23 0 2376 83 6 13 chr1 45083546 45083860 -237109804 + AluSx SINE Alu 1 312 0 1223 126 0 6 chr1 45083862 45084037 -237109627 + AluSg/x SINE Alu 128 301 -9 1723 175 10 3 chr1 45084234 45084526 -237109138 + AluJo SINE Alu 3 296 -16 2000 161 3 0 chr1 45085350 45085661 -237108003 - AluJo SINE Alu 0 312 1 2252 126 0 0 chr1 45085752 45086054 -237107610 + AluJb SINE Alu 2 303 -9 597 116 9 18 chr1 45086059 45086171 -237107493 + (GAAA)n Simple_repeat Simple_repeat 4 114 0 230 290 97 11 chr1 45086171 45086264 -237107400 - MIR SINE MIR -128 134 34 1993 116 0 44 chr1 45086265 45086588 -237107076 + AluSc SINE Alu 1 310 0 488 82 59 0 chr1 45086595 45086680 -237106984 + AluJ/FRAM SINE Alu 222 311 -1 2424 103 0 0 chr1 45086905 45087215 -237106449 + AluSg SINE Alu 1 310 0 2411 90 3 31 chr1 45087322 45087644 -237106020 + AluSq SINE Alu 1 313 0 722 109 0 0 chr1 45087955 45088065 -237105599 - HY1 scRNA scRNA -1 111 2 500 309 73 0 chr1 45088388 45088566 -237105098 - MIR SINE MIR -18 244 54 367 337 57 2 chr1 45089067 45089241 -237104423 - MIR SINE MIR -45 217 30 569 361 19 5 chr1 45089380 45089585 -237104079 + MIR SINE MIR 49 256 -6 2285 95 3 3 chr1 45090051 45090357 -237103307 - AluSx SINE Alu -6 306 1 395 271 220 19 chr1 45090379 45090593 -237103071 + L2 LINE L2 3052 3308 -5 2006 116 32 3 chr1 45090748 45091054 -237102610 + AluSq SINE Alu 1 313 0 660 326 133 9 chr1 45091241 45091572 -237102092 + L3 LINE CR1 708 1079 -498 402 256 31 50 chr1 45091627 45091706 -237101958 - MIR SINE MIR -36 226 150 2304 97 0 3 chr1 45091706 45092005 -237101659 - AluSg SINE Alu -12 298 1 402 256 31 50 chr1 45092005 45092085 -237101579 - MIR SINE MIR -112 150 70 307 342 102 5 chr1 45092146 45092342 -237101322 - L2 LINE L2 -12 3260 3046 354 287 132 17 chr1 45092900 45093074 -237100590 + MIR SINE MIR 5 198 -64 1998 72 0 0 chr1 45095296 45095533 -237098131 + AluY SINE Alu 72 308 -3 208 241 56 0 chr1 45096865 45096919 -237096745 - MIR SINE MIR -92 170 114 205 119 24 24 chr1 45097743 45097785 -237095879 + MIR SINE MIR 13 54 -208 2239 123 0 16 chr1 45097822 45098139 -237095525 - AluJo SINE Alu 0 312 1 472 205 151 42 chr1 45098140 45098306 -237095358 + MIR SINE MIR 44 227 -35 1251 170 14 0 chr1 45098507 45098719 -237094945 - AluJb SINE Alu -1 311 97 426 52 0 0 chr1 45198723 45198781 -236994883 - Alu SINE Alu -260 58 1 930 171 0 0 chr1 45198936 45199076 -236994588 + FRAM SINE Alu 1 140 -36 403 202 10 48 chr1 45199189 45199293 -236994371 - MIR SINE MIR 0 262 163 461 238 168 0 chr1 45199321 45199464 -236994200 - MIR SINE MIR -41 221 55 21 36 0 0 chr1 45199472 45199500 -236994164 + AT_rich Low_complexity Low_complexity 1 28 0 4817 157 42 48 chr1 45200014 45200565 -236993099 + L1MB2 LINE L1 4613 5166 -1005 2284 92 7 0 chr1 45200565 45200860 -236992804 + AluSp SINE Alu 1 297 -16 4817 157 42 48 chr1 45200860 45201012 -236992652 + L1MB2 LINE L1 5166 5317 -854 2192 120 3 3 chr1 45201012 45201320 -236992344 + AluY SINE Alu 1 308 -3 4817 157 42 48 chr1 45201320 45201563 -236992101 + L1MB2 LINE L1 5317 5560 -611 2596 77 0 0 chr1 45201563 45201876 -236991788 + AluSq SINE Alu 1 313 0 4817 157 42 48 chr1 45201876 45202495 -236991169 + L1MB2 LINE L1 5560 6170 -1 260 187 67 60 chr1 45202498 45202632 -236991032 - L1MC4 LINE L1 -6 8036 7902 354 80 0 0 chr1 45202632 45202682 -236990982 + (CA)n Simple_repeat Simple_repeat 2 51 0 619 187 53 0 chr1 45202683 45202833 -236990831 - L1MC4 LINE L1 -797 7245 7088 2164 117 13 0 chr1 45202837 45203136 -236990528 - AluSx SINE Alu -8 304 2 268 192 0 55 chr1 45203175 45203248 -236990416 + L1MC4 LINE L1 7830 7898 -144 243 213 107 13 chr1 45203556 45203631 -236990033 - MIR SINE MIR 0 262 181 225 333 108 47 chr1 45203767 45203896 -236989768 - L2 LINE L2 -20 3252 3116 468 279 96 46 chr1 45203900 45204119 -236989545 - MIR SINE MIR -16 246 17 333 296 56 84 chr1 45204624 45204766 -236988898 + MER5B DNA MER1_type 4 141 -37 1042 275 38 14 chr1 45204766 45205133 -236988531 + L1MC4a LINE L1 5511 5886 -1922 26 50 0 0 chr1 45205285 45205325 -236988339 + AT_rich Low_complexity Low_complexity 1 40 0 648 0 0 0 chr1 45205404 45205476 -236988188 + (CA)n Simple_repeat Simple_repeat 2 73 0 411 211 263 0 chr1 45205701 45205815 -236987849 + MER5A DNA MER1_type 46 189 0 2600 46 0 3 chr1 45205955 45206259 -236987405 + AluY SINE Alu 1 303 -8 381 183 0 37 chr1 45206427 45206509 -236987155 + MER103 DNA DNA 2 80 -86 422 294 72 33 chr1 45206609 45206789 -236986875 + MIR SINE MIR 76 262 0 23 68 0 0 chr1 45206900 45206944 -236986720 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 45207258 45207287 -236986377 + AT_rich Low_complexity Low_complexity 1 29 0 1911 122 0 4 chr1 45207721 45207984 -236985680 - AluSx SINE Alu -7 305 44 1353 103 0 0 chr1 45207987 45208162 -236985502 + AluSq SINE Alu 116 290 -23 711 288 81 46 chr1 45208440 45208646 -236985018 + L2 LINE L2 855 1077 -2237 2049 71 71 7 chr1 45208646 45208926 -236984738 - AluSg SINE Alu -12 298 1 711 288 81 46 chr1 45208926 45209042 -236984622 + L2 LINE L2 1077 1188 -2126 1402 163 7 69 chr1 45209061 45209337 -236984327 - AluJo SINE Alu -53 259 1 1119 273 48 51 chr1 45209337 45209770 -236983894 + L2 LINE L2 1272 1703 -1611 836 119 5 139 chr1 45209785 45209979 -236983685 + AluSg/x SINE Alu 138 305 -7 242 364 18 30 chr1 45209984 45210094 -236983570 + L2 LINE L2 1712 1821 -1493 2474 65 0 7 chr1 45210094 45210402 -236983262 - AluY SINE Alu -5 306 1 242 364 18 30 chr1 45210402 45210456 -236983208 + L2 LINE L2 1821 1874 -1440 1035 268 67 121 chr1 45210478 45211834 -236981830 + L2 LINE L2 2036 3313 0 372 293 210 20 chr1 45211961 45212217 -236981447 - L3 LINE CR1 -814 763 441 2006 134 13 16 chr1 45212217 45212522 -236981142 - AluSx SINE Alu -8 304 1 372 293 210 20 chr1 45212522 45212565 -236981099 - L3 LINE CR1 -1136 441 407 400 307 101 28 chr1 45213054 45213144 -236980520 - MIR SINE MIR -10 252 170 1972 138 3 10 chr1 45213144 45213441 -236980223 + AluJb SINE Alu 1 295 -17 400 307 101 28 chr1 45213441 45213568 -236980096 - MIR SINE MIR -92 170 19 525 354 87 0 chr1 45213843 45214038 -236979626 + MIR SINE MIR 37 248 -14 2177 121 0 7 chr1 45214207 45214505 -236979159 + AluSg SINE Alu 1 296 -14 195 344 22 50 chr1 45215310 45215490 -236978174 - L2 LINE L2 -798 2516 2342 776 239 33 0 chr1 45215612 45215796 -236977868 + MER58A DNA MER1_type 35 224 0 284 294 44 75 chr1 45215839 45215999 -236977665 - MIR3 SINE MIR -45 163 9 2176 102 3 25 chr1 45216226 45216540 -236977124 - AluSq SINE Alu -6 307 1 180 345 138 0 chr1 45218591 45218678 -236974986 + L2 LINE L2 2603 2701 -613 315 169 0 0 chr1 45218691 45218756 -236974908 - L1MD2 LINE L1 -7 6352 6288 207 268 239 0 chr1 45218761 45218832 -236974832 - L2 LINE L2 -1 3271 3184 389 123 62 25 chr1 45218934 45219015 -236974649 + L1M4 LINE L1 89 172 -6370 842 235 17 22 chr1 45219018 45219197 -236974467 + MER82 DNA MER2_type 468 645 -8 949 174 47 19 chr1 45219204 45219249 -236974415 + L1M4 LINE L1 1194 1236 -5306 1747 153 26 23 chr1 45219249 45219557 -236974107 + AluJb SINE Alu 1 309 -3 949 174 47 19 chr1 45219557 45219724 -236973940 + L1M4 LINE L1 1236 1412 -5130 1844 213 61 5 chr1 45219737 45220179 -236973485 + L1M4 LINE L1 2959 3425 -3219 992 182 0 6 chr1 45220181 45220357 -236973307 - FRAM SINE Alu -1 175 1 2396 196 126 16 chr1 45220359 45220811 -236972853 + L1M4 LINE L1 3418 3977 -2667 2199 119 0 19 chr1 45220811 45221129 -236972535 + AluSq SINE Alu 1 312 -1 2396 196 126 16 chr1 45221129 45221384 -236972280 + L1M4 LINE L1 3977 4203 -2441 2091 112 20 0 chr1 45221384 45221678 -236971986 + AluSx SINE Alu 1 300 -12 1529 195 0 17 chr1 45221795 45222082 -236971582 + AluJb SINE Alu 1 282 -30 2013 100 14 4 chr1 45222101 45222407 -236971257 + AluSx SINE Alu 1 309 0 276 237 104 15 chr1 45222531 45222666 -236970998 + L1ME4a LINE L1 5947 6093 -28 418 231 154 39 chr1 45222885 45223015 -236970649 - MER91A DNA MER1_type -44 152 8 559 221 53 15 chr1 45223366 45223497 -236970167 - L2 LINE L2 -5 3308 3173 205 344 48 40 chr1 45223909 45224034 -236969630 - L2 LINE L2 -10 3262 3137 2015 95 67 7 chr1 45224576 45224861 -236968803 + AluSg SINE Alu 1 302 -8 386 325 82 93 chr1 45224922 45225298 -236968366 + L2 LINE L2 2874 3245 -27 1492 193 3 26 chr1 45225456 45225767 -236967897 + AluJb SINE Alu 1 304 -8 262 328 0 0 chr1 45226037 45226104 -236967560 - L2 LINE L2 -202 3070 3004 2475 80 0 0 chr1 45226230 45226541 -236967123 + AluY SINE Alu 1 311 0 303 252 37 82 chr1 45228348 45228483 -236965181 - MIR SINE MIR -64 144 16 1963 101 124 0 chr1 45228918 45229185 -236964479 - AluSg SINE Alu 0 300 1 326 118 0 66 chr1 45229190 45229266 -236964398 + (T)n Simple_repeat Simple_repeat 1 71 0 2503 216 130 5 chr1 45229394 45230057 -236963607 - L2 LINE L2 -530 2784 2039 224 295 90 0 chr1 45230074 45230152 -236963512 - L2 LINE L2 -1544 1770 1686 * 299 295 89 0 chr1 45230149 45230261 -236963403 + MIR SINE MIR 138 259 -3 2370 99 0 3 chr1 45230325 45230628 -236963036 + AluY SINE Alu 1 302 -9 225 0 0 0 chr1 45230867 45230892 -236962772 + (T)n Simple_repeat Simple_repeat 1 25 0 1947 118 52 0 chr1 45231137 45231424 -236962240 + AluSq SINE Alu 1 302 -11 248 279 38 0 chr1 45231612 45231691 -236961973 + MARNA DNA Mariner 27 108 -478 2335 97 0 0 chr1 45231726 45232025 -236961639 + AluSx SINE Alu 1 299 -13 2448 65 3 13 chr1 45232025 45232334 -236961330 + AluY SINE Alu 1 307 -4 924 194 6 6 chr1 45232334 45232504 -236961160 + AluSg/x SINE Alu 137 306 -6 185 295 105 21 chr1 45232941 45233036 -236960628 + L2 LINE L2 3133 3235 -37 198 118 0 0 chr1 45233265 45233299 -236960365 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1715 113 4 4 chr1 45233302 45233540 -236960124 - AluSq SINE Alu -21 292 55 25 0 0 0 chr1 45233640 45233665 -236959999 + AT_rich Low_complexity Low_complexity 1 25 0 1922 136 0 0 chr1 45234152 45234431 -236959233 + AluSg SINE Alu 1 279 -31 2080 113 0 4 chr1 45234452 45234727 -236958937 + AluSx SINE Alu 21 294 -18 2173 83 13 23 chr1 45234727 45235026 -236958638 + AluSx SINE Alu 1 297 -15 792 192 15 0 chr1 45235084 45235214 -236958450 - FRAM SINE Alu -44 132 1 1154 199 87 59 chr1 45235227 45235514 -236958150 - AluJo SINE Alu -7 295 1 2466 93 0 0 chr1 45235872 45236182 -236957482 - AluSg SINE Alu 0 310 1 2402 91 3 0 chr1 45236263 45236571 -236957093 + AluSp SINE Alu 2 310 -3 2193 114 0 16 chr1 45236850 45237166 -236956498 - AluSx SINE Alu -1 311 1 2225 97 0 29 chr1 45238355 45238663 -236955001 + AluSx SINE Alu 1 299 -13 1064 240 93 30 chr1 45238755 45239088 -236954576 - MLT1E3 LTR MaLR -1 623 270 1644 162 14 40 chr1 45239144 45239440 -236954224 - AluJo SINE Alu -21 291 4 800 90 0 0 chr1 45239440 45239540 -236954124 + AluSg/x SINE Alu 197 296 -14 418 246 36 36 chr1 45239996 45240134 -236953530 + MLT1J LTR MaLR 374 511 0 788 74 28 9 chr1 45240174 45240282 -236953382 + HY1 scRNA scRNA 2 111 -1 1923 146 0 3 chr1 45240385 45240679 -236952985 - AluSx SINE Alu -19 293 1 295 295 53 11 chr1 45240687 45240782 -236952882 + MIR SINE MIR 53 151 -111 341 251 141 68 chr1 45240995 45241158 -236952506 - MIR SINE MIR -71 191 17 2316 71 34 3 chr1 45241485 45241782 -236951882 - AluSp SINE Alu -7 306 1 21 0 0 0 chr1 45247443 45247464 -236946200 + AT_rich Low_complexity Low_complexity 1 21 0 1110 150 0 0 chr1 45247485 45247652 -236946012 - AluSp SINE Alu -7 306 140 2319 75 3 7 chr1 45248398 45248692 -236944972 - AluSg1 SINE Alu -16 293 1 2222 96 3 0 chr1 45249213 45249506 -236944158 + AluY SINE Alu 1 294 -17 2176 119 3 7 chr1 45249599 45249902 -236943762 + AluSp SINE Alu 1 302 -11 523 246 140 35 chr1 45250437 45250608 -236943056 + MER5A DNA MER1_type 1 189 0 246 281 201 7 chr1 45250651 45250790 -236942874 - MIR SINE MIR -46 216 51 837 172 22 8 chr1 45251098 45251232 -236942432 - AluJo SINE Alu -175 137 2 212 242 182 30 chr1 45251558 45251657 -236942007 - L2 LINE L2 -14 3258 3145 1979 110 4 11 chr1 45251657 45251938 -236941726 + AluSx SINE Alu 1 279 -33 362 295 67 62 chr1 45251948 45252141 -236941523 - L2 LINE L2 -94 3178 2985 797 140 0 0 chr1 45252148 45252262 -236941402 + FAM SINE Alu 22 135 -50 314 321 80 58 chr1 45252268 45252492 -236941172 - L2 LINE L2 -337 2977 2749 2129 130 10 0 chr1 45252513 45252812 -236940852 + AluSx SINE Alu 1 302 -10 2412 82 0 19 chr1 45252940 45253256 -236940408 + AluSg SINE Alu 1 310 0 2240 106 0 3 chr1 45253288 45253590 -236940074 + AluSx SINE Alu 2 302 -10 727 197 169 0 chr1 45253697 45253744 -236939920 - MER3 DNA MER1_type 0 209 171 2173 113 28 0 chr1 45253744 45254035 -236939629 - AluSx SINE Alu -13 299 1 727 197 169 0 chr1 45254035 45254165 -236939499 - MER3 DNA MER1_type -38 171 2 218 298 64 32 chr1 45255241 45255335 -236938329 - MIR SINE MIR -82 180 84 277 271 178 34 chr1 45255487 45255605 -236938059 - MIR SINE MIR -77 185 51 423 0 0 0 chr1 45255685 45255732 -236937932 + (TG)n Simple_repeat Simple_repeat 2 48 0 1498 72 21 16 chr1 45255824 45256017 -236937647 + AluSg/x SINE Alu 100 293 -17 2299 103 0 7 chr1 45256093 45256403 -236937261 - AluSx SINE Alu -3 309 2 1741 143 0 38 chr1 45256414 45256707 -236936957 - AluJo SINE Alu 0 312 31 39 0 0 0 chr1 45256724 45256763 -236936901 + AT_rich Low_complexity Low_complexity 1 39 0 985 168 65 0 chr1 45256769 45256924 -236936740 - FAM SINE Alu -9 166 2 238 299 30 0 chr1 45257001 45257068 -236936596 + MIR SINE MIR 30 98 -164 2478 83 0 0 chr1 45257285 45257586 -236936078 + AluY SINE Alu 1 301 -10 191 305 17 0 chr1 45258545 45258604 -236935060 - L2 LINE L2 -9 3263 3204 2167 134 0 0 chr1 45258691 45258998 -236934666 - AluSx SINE Alu -5 307 1 1710 145 93 0 chr1 45259351 45259620 -236934044 + AluJo SINE Alu 1 294 -18 2297 88 0 3 chr1 45259886 45260191 -236933473 - AluSq SINE Alu -9 304 1 2419 63 0 0 chr1 45260215 45260502 -236933162 - AluY SINE Alu -24 287 1 1709 103 36 75 chr1 45260734 45261015 -236932649 - AluSq SINE Alu -43 270 1 867 181 0 0 chr1 45261226 45261359 -236932305 - FLAM_C SINE Alu 0 133 1 242 179 54 36 chr1 45261493 45261549 -236932115 + L2 LINE L2 2557 2613 -701 1275 243 131 30 chr1 45261588 45262224 -236931440 + L2 LINE L2 2603 3313 0 583 251 137 26 chr1 45262322 45262549 -236931115 - MIR SINE MIR -3 259 8 3328 209 210 5 chr1 45262637 45263754 -236929910 - Charlie2a DNA MER1_type -37 2825 1479 681 262 68 5 chr1 45263832 45264053 -236929611 - Charlie2b DNA MER1_type -2130 652 418 2290 97 0 0 chr1 45265305 45265604 -236928060 + AluSq SINE Alu 1 299 -14 187 27 27 54 chr1 45265735 45265772 -236927892 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 455 89 0 0 chr1 45265778 45265834 -236927830 - AluSc SINE Alu -36 273 218 981 91 0 0 chr1 45265914 45266035 -236927629 - AluSc SINE Alu -106 203 83 1379 177 47 25 chr1 45266048 45266325 -236927339 - AluJo SINE Alu -26 286 4 1846 161 13 10 chr1 45266485 45266790 -236926874 - AluJb SINE Alu -6 306 1 938 184 13 0 chr1 45267781 45267939 -236925725 - AluSg/x SINE Alu -12 298 139 261 174 0 43 chr1 45267940 45267986 -236925678 - Alu SINE Alu -258 44 1 218 261 174 0 chr1 45268037 45268106 -236925558 + L2 LINE L2 3187 3267 -5 2271 94 3 7 chr1 45268129 45268438 -236925226 - AluSc SINE Alu -1 308 1 21 0 0 0 chr1 45268955 45268976 -236924688 + AT_rich Low_complexity Low_complexity 1 21 0 309 265 74 105 chr1 45269746 45269908 -236923756 - MIR SINE MIR -56 206 50 256 246 9 105 chr1 45270433 45270479 -236923185 + MIR SINE MIR 104 153 -109 2101 123 0 7 chr1 45270479 45270789 -236922875 + AluSx SINE Alu 1 308 -4 256 246 9 105 chr1 45270789 45270856 -236922808 + MIR SINE MIR 153 206 -56 250 229 0 200 chr1 45270878 45271023 -236922641 + MIR SINE MIR 72 178 -84 1673 174 10 16 chr1 45271023 45271333 -236922331 + AluJb SINE Alu 1 308 -4 250 229 0 200 chr1 45271333 45271362 -236922302 + MIR SINE MIR 178 211 -51 1303 215 72 0 chr1 45271863 45272142 -236921522 + AluJo SINE Alu 1 299 -13 784 173 148 0 chr1 45272152 45272314 -236921350 - MER5A DNA MER1_type 0 189 4 282 331 0 0 chr1 45272350 45272477 -236921187 + L1MD2 LINE L1 5477 5603 -567 302 253 58 0 chr1 45272485 45272572 -236921092 + L1MD2 LINE L1 5848 5939 -420 259 316 42 21 chr1 45273121 45273191 -236920473 + MIR SINE MIR 30 104 -158 1899 147 10 3 chr1 45273191 45273497 -236920167 - AluJb SINE Alu -4 308 1 259 316 42 21 chr1 45273497 45273521 -236920143 + MIR SINE MIR 104 126 -136 278 103 0 179 chr1 45273566 45273644 -236920020 - L1MB8 LINE L1 0 6178 6115 1557 170 4 18 chr1 45273750 45274090 -236919574 - AluJb SINE Alu 0 345 10 419 286 82 18 chr1 45274436 45274607 -236919057 - MLT1J2 LTR MaLR 0 450 269 282 336 30 37 chr1 45274661 45274795 -236918869 + L2 LINE L2 3171 3303 -10 2368 65 10 0 chr1 45275225 45275531 -236918133 + AluY SINE Alu 1 309 -2 1768 165 14 3 chr1 45275544 45275841 -236917823 + AluJb SINE Alu 1 300 -12 1533 191 0 20 chr1 45275896 45276195 -236917469 - AluJb SINE Alu -19 293 1 392 308 6 35 chr1 45276966 45277208 -236916456 + CT-rich Low_complexity Low_complexity 1 234 0 840 165 0 0 chr1 45277266 45277393 -236916271 + FLAM_C SINE Alu 1 127 -16 1029 178 0 6 chr1 45277486 45277655 -236916009 - FAM SINE Alu -4 171 4 197 267 221 0 chr1 45278132 45278218 -236915446 - L2 LINE L2 -1 3312 3208 22 94 0 0 chr1 45278528 45278592 -236915072 + AT_rich Low_complexity Low_complexity 1 64 0 330 286 0 0 chr1 45279210 45279280 -236914384 + MIR SINE MIR 57 126 -82 1264 183 29 0 chr1 45279305 45279513 -236914151 - MER58A DNA MER1_type -10 214 1 2238 83 7 3 chr1 45279665 45279967 -236913697 + AluSq SINE Alu 1 303 -10 288 0 0 0 chr1 45279967 45279999 -236913665 + (TA)n Simple_repeat Simple_repeat 2 33 0 199 236 36 18 chr1 45280380 45280435 -236913229 - L2 LINE L2 -243 3070 3015 191 289 0 0 chr1 45280495 45280533 -236913131 + MIR SINE MIR 37 74 -134 355 164 151 0 chr1 45280544 45280617 -236913047 + FLAM_A SINE Alu 1 84 -49 204 288 68 0 chr1 45280619 45280678 -236912986 + MIR SINE MIR 76 138 -124 1362 299 128 11 chr1 45280957 45281489 -236912175 - L2 LINE L2 -405 2909 2316 468 260 47 97 chr1 45281502 45281567 -236912097 - LTR67 LTR ERVL -22 535 468 2001 100 0 47 chr1 45281567 45281889 -236911775 + AluSx SINE Alu 1 308 0 2320 101 0 0 chr1 45281899 45282207 -236911457 + AluSq SINE Alu 1 308 -5 468 260 47 97 chr1 45282207 45282508 -236911156 - LTR67 LTR ERVL -98 459 97 954 252 199 3 chr1 45282626 45282943 -236910721 - L2 LINE L2 -986 2328 1950 1591 156 21 103 chr1 45283080 45283459 -236910205 - MER7A DNA MER2_type 0 346 1 2381 69 0 3 chr1 45283512 45283815 -236909849 - AluY SINE Alu -9 302 1 669 228 96 12 chr1 45283815 45283982 -236909682 - MER5A DNA MER1_type -1 188 8 35 0 0 0 chr1 45284073 45284108 -236909556 + AT_rich Low_complexity Low_complexity 1 35 0 2248 89 13 0 chr1 45284116 45284418 -236909246 + AluSx SINE Alu 1 306 -6 2224 8 0 0 chr1 45284768 45285016 -236908648 + AluY SINE Alu 63 310 -1 568 259 139 6 chr1 45285019 45285185 -236908479 - MIR SINE MIR -67 195 8 287 238 57 66 chr1 45285197 45285296 -236908368 - L1ME4a LINE L1 -32 6089 5990 1818 141 35 0 chr1 45285296 45285580 -236908084 + AluJo SINE Alu 1 294 -18 287 238 57 66 chr1 45285580 45285602 -236908062 - L1ME4a LINE L1 -131 5990 5969 319 264 119 62 chr1 45285656 45285764 -236907900 - L1ME4a LINE L1 -67 6054 5954 9731 82 8 14 chr1 45285764 45286850 -236906814 - HSMAR1 DNA Mariner 0 1287 209 2085 112 0 3 chr1 45286850 45287153 -236906511 - AluSx SINE Alu -8 304 3 9731 82 8 14 chr1 45287153 45287361 -236906303 - HSMAR1 DNA Mariner -1078 209 1 319 264 119 62 chr1 45287361 45287445 -236906219 - L1ME4a LINE L1 -167 5954 5851 385 216 184 8 chr1 45287598 45287723 -236905941 + L1ME LINE L1 5511 5657 -464 222 118 0 0 chr1 45288237 45288271 -236905393 + (TA)n Simple_repeat Simple_repeat 1 34 0 267 257 46 46 chr1 45288375 45288484 -236905180 + MIR SINE MIR 34 142 -120 * 320 326 76 28 chr1 45288454 45288598 -236905066 - L2 LINE L2 -1 3271 3121 333 274 20 92 chr1 45288889 45288929 -236904735 + MIR SINE MIR 71 112 -150 675 158 18 0 chr1 45288929 45289071 -236904593 - FLAM_C SINE Alu 0 144 1 333 274 20 92 chr1 45289071 45289116 -236904548 + MIR SINE MIR 112 159 -103 913 164 40 76 chr1 45289116 45289341 -236904323 - MER20 DNA MER1_type -1 218 2 333 274 20 92 chr1 45289341 45289405 -236904259 + MIR SINE MIR 159 212 -50 1878 144 3 7 chr1 45289651 45289949 -236903715 + AluSx SINE Alu 1 297 -15 532 255 104 83 chr1 45289986 45290361 -236903303 - HAL1 LINE L1 -1043 1464 1073 2068 91 9 56 chr1 45290361 45290681 -236902983 - AluSg SINE Alu -5 305 1 532 255 104 83 chr1 45290681 45290834 -236902830 - HAL1 LINE L1 -1434 1073 925 2055 113 0 0 chr1 45290906 45291189 -236902475 + AluSq SINE Alu 8 290 -23 370 211 106 95 chr1 45291194 45291357 -236902307 - L1ME4a LINE L1 -111 6010 5850 1833 158 0 20 chr1 45291357 45291523 -236902141 - AluSx SINE Alu -14 298 130 261 0 0 0 chr1 45291523 45291552 -236902112 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1535 160 14 14 chr1 45291552 45291833 -236901831 - AluSg SINE Alu -28 282 2 1833 158 0 20 chr1 45291833 45291969 -236901695 - AluSx SINE Alu -180 132 1 370 211 106 95 chr1 45291969 45292089 -236901575 - L1ME4a LINE L1 -271 5850 5724 324 310 17 43 chr1 45292109 45292225 -236901439 + L2 LINE L2 3150 3262 -10 228 282 13 0 chr1 45292249 45292327 -236901337 - L1ME4a LINE L1 -455 5666 5588 881 231 104 0 chr1 45292549 45292761 -236900903 + MIR SINE MIR 27 260 -2 23 0 0 0 chr1 45292837 45292860 -236900804 + AT_rich Low_complexity Low_complexity 1 23 0 2105 108 0 0 chr1 45292860 45293146 -236900518 - AluSx SINE Alu -22 290 5 2258 86 0 13 chr1 45293158 45293461 -236900203 - AluSp SINE Alu -14 299 1 1958 143 0 6 chr1 45293484 45293798 -236899866 - AluJb SINE Alu 0 312 1 2175 90 10 0 chr1 45293830 45294120 -236899544 + AluSx SINE Alu 6 298 -14 1703 153 20 7 chr1 45294329 45294623 -236899041 + AluJo SINE Alu 6 303 -9 2529 289 60 29 chr1 45294624 45295853 -236897811 - ERVL LTR ERVL -1142 4622 3313 604 257 45 39 chr1 45295919 45296098 -236897566 - ERVL LTR ERVL -2497 3157 2978 2068 87 3 7 chr1 45296531 45296820 -236896844 + AluY SINE Alu 1 288 -23 2561 45 0 6 chr1 45296880 45297191 -236896473 - AluY SINE Alu -2 309 1 2246 93 0 3 chr1 45298269 45298571 -236895093 - AluSx SINE Alu -11 301 1 514 183 21 0 chr1 45298571 45298664 -236895000 - MER46A DNA MER2_type -140 96 2 21 0 0 0 chr1 45300408 45300429 -236893235 + AT_rich Low_complexity Low_complexity 1 21 0 1594 86 0 5 chr1 45301448 45301670 -236891994 - AluSp SINE Alu -8 305 85 1561 123 0 58 chr1 45301672 45301797 -236891867 - AluSg SINE Alu -64 246 142 1952 137 3 0 chr1 45301797 45302103 -236891561 - AluSx SINE Alu -4 308 2 1561 123 0 58 chr1 45302103 45302238 -236891426 - AluSg SINE Alu -168 142 1 213 244 123 7 chr1 45302748 45302834 -236890830 + MIR SINE MIR 45 137 -71 794 226 92 52 chr1 45302842 45303025 -236890639 - L2 LINE L2 -40 3273 3072 2182 108 10 0 chr1 45303025 45303331 -236890333 - AluSx SINE Alu -3 309 1 794 226 92 52 chr1 45303331 45303452 -236890212 - L2 LINE L2 -241 3072 2957 2807 210 124 4 chr1 45303453 45304149 -236889515 - L2 LINE L2 -497 2817 2039 229 295 90 0 chr1 45304166 45304244 -236889420 - L2 LINE L2 -1544 1770 1686 * 331 309 79 0 chr1 45304227 45304353 -236889311 + MIR SINE MIR 124 259 -3 2392 75 0 3 chr1 45304417 45304723 -236888941 + AluY SINE Alu 1 305 -6 207 0 0 0 chr1 45304955 45304978 -236888686 + (T)n Simple_repeat Simple_repeat 1 23 0 678 262 287 21 chr1 45305164 45305605 -236888059 - L2 LINE L2 -4 3309 2730 213 231 15 15 chr1 45306179 45306244 -236887420 + G-rich Low_complexity Low_complexity 4 68 0 213 349 75 9 chr1 45306468 45306574 -236887090 + L2 LINE L2 3133 3245 -27 183 256 33 67 chr1 45306575 45306665 -236886999 - L2 LINE L2 -15 3257 3171 547 274 83 42 chr1 45308535 45308776 -236884888 - MIR SINE MIR -4 258 8 216 0 0 0 chr1 45309241 45309265 -236884399 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 220 312 86 11 chr1 45309380 45309473 -236884191 - MIR SINE MIR -76 132 33 208 256 12 37 chr1 45310112 45310194 -236883470 + G-rich Low_complexity Low_complexity 2 81 0 193 266 170 78 chr1 45311333 45311487 -236882177 + L2 LINE L2 2984 3165 -148 2260 61 40 0 chr1 45311487 45311783 -236881881 - AluY SINE Alu -2 309 2 193 266 170 78 chr1 45311783 45311846 -236881818 + L2 LINE L2 3165 3221 -92 183 247 134 31 chr1 45311976 45312073 -236881591 - MIR SINE MIR -59 149 43 241 389 24 40 chr1 45313176 45313274 -236880390 + L2 LINE L2 3148 3245 -27 2126 127 0 0 chr1 45313274 45313574 -236880090 - AluSx SINE Alu -12 300 1 241 389 24 40 chr1 45313574 45313601 -236880063 + L2 LINE L2 3245 3271 -1 335 211 46 64 chr1 45314444 45314553 -236879111 - MIR SINE MIR -60 148 42 587 258 42 86 chr1 45314963 45315370 -236878294 + L1MC5 LINE L1 7519 7907 -54 2031 87 22 0 chr1 45315394 45315693 -236877971 + AluSq SINE Alu 2 306 0 38 68 0 0 chr1 45315718 45315791 -236877873 + AT_rich Low_complexity Low_complexity 1 73 0 277 206 16 0 chr1 45315798 45315861 -236877803 + L1MC2 LINE L1 6272 6335 -9 557 165 0 34 chr1 45316061 45316293 -236877371 + (CA)n Simple_repeat Simple_repeat 1 224 0 189 350 52 10 chr1 45316863 45316960 -236876704 - MIR SINE MIR -67 141 41 201 250 0 0 chr1 45317219 45317263 -236876401 + (CAGA)n Simple_repeat Simple_repeat 1 44 0 219 333 13 0 chr1 45319372 45319447 -236874217 - MIR SINE MIR -77 185 110 191 35 0 35 chr1 45319554 45319583 -236874081 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2042 138 0 10 chr1 45319586 45319898 -236873766 - AluSx SINE Alu -3 309 1 328 303 101 34 chr1 45322205 45322413 -236871251 - MIR SINE MIR -6 256 35 21 36 0 0 chr1 45323079 45323107 -236870557 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 45323747 45323772 -236869892 + GC_rich Low_complexity Low_complexity 1 25 0 555 263 43 67 chr1 45324624 45324725 -236868939 + MIR SINE MIR 53 155 -107 180 0 0 0 chr1 45324725 45324745 -236868919 + (TA)n Simple_repeat Simple_repeat 2 21 0 1817 117 46 18 chr1 45324745 45325027 -236868637 - AluSx SINE Alu -21 291 2 555 263 43 67 chr1 45325027 45325133 -236868531 + MIR SINE MIR 153 256 -6 860 238 95 134 chr1 45325627 45326136 -236867528 - MLT1G1 LTR MaLR 0 595 68 2139 83 0 51 chr1 45326136 45326450 -236867214 - AluSg SINE Alu -12 298 1 860 238 95 134 chr1 45326450 45326501 -236867163 - MLT1G1 LTR MaLR -527 68 17 1518 177 9 54 chr1 45326501 45326670 -236866994 - AluJo SINE Alu -10 302 127 195 42 0 0 chr1 45326670 45326694 -236866970 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2177 92 0 0 chr1 45326694 45326976 -236866688 - AluSx SINE Alu -30 282 1 1518 177 9 54 chr1 45326976 45327121 -236866543 - AluJo SINE Alu -183 129 1 860 238 95 134 chr1 45327121 45327178 -236866486 - MLT1G1 LTR MaLR -578 17 1 2210 93 3 3 chr1 45327250 45327552 -236866112 + AluSp SINE Alu 1 302 -11 396 0 0 0 chr1 45327553 45327597 -236866067 + (TA)n Simple_repeat Simple_repeat 1 44 0 609 135 0 0 chr1 45327680 45327769 -236865895 - FRAM SINE Alu -54 122 34 1458 182 36 13 chr1 45327861 45328163 -236865501 + AluJo SINE Alu 1 309 -3 632 146 52 0 chr1 45328177 45328273 -236865391 + AluJ/FLAM SINE Alu 2 102 -210 357 316 83 64 chr1 45328371 45328697 -236864967 + L1M4 LINE L1 4913 5244 -902 191 149 54 0 chr1 45328772 45328846 -236864818 + (TA)n Simple_repeat Simple_repeat 1 78 0 498 270 19 42 chr1 45328923 45328949 -236864715 + L1M4 LINE L1 3548 3573 -2573 2197 94 3 3 chr1 45328949 45329258 -236864406 + AluSq SINE Alu 1 309 -4 498 270 19 42 chr1 45329258 45329446 -236864218 + L1M4 LINE L1 3573 3757 -2389 1868 140 0 0 chr1 45329447 45329719 -236863945 + AluSx SINE Alu 1 272 -40 710 162 0 17 chr1 45330152 45330269 -236863395 - FLAM_A SINE Alu -17 125 11 509 287 46 133 chr1 45330470 45330771 -236862893 + L2 LINE L2 190 515 -2799 1385 153 67 25 chr1 45330771 45331053 -236862611 - AluJo SINE Alu -18 294 1 509 287 46 133 chr1 45331053 45331132 -236862532 + L2 LINE L2 515 599 -2715 2296 87 0 0 chr1 45331132 45331432 -236862232 - AluSg SINE Alu -10 300 1 509 287 46 133 chr1 45331432 45331584 -236862080 + L2 LINE L2 599 763 -2551 1509 157 87 7 chr1 45331584 45331870 -236861794 - AluJo SINE Alu -3 309 1 2081 125 0 3 chr1 45331878 45332190 -236861474 - AluSp SINE Alu -2 311 1 509 287 46 133 chr1 45332190 45332206 -236861458 + L2 LINE L2 770 689 -2625 2335 73 0 10 chr1 45332206 45332519 -236861145 + AluY SINE Alu 1 310 -1 509 287 46 133 chr1 45332519 45332606 -236861058 + L2 LINE L2 688 781 -2533 1025 229 33 65 chr1 45332685 45332991 -236860673 + MLT1H1 LTR MaLR 214 509 -46 3249 242 99 83 chr1 45332991 45333421 -236860243 - L1MD2 LINE L1 -32 7138 6716 2357 78 0 10 chr1 45333421 45333729 -236859935 - AluY SINE Alu -6 305 1 3249 242 99 83 chr1 45333729 45334022 -236859642 - L1MD2 LINE L1 -454 6716 6429 1476 138 0 22 chr1 45334022 45334283 -236859381 - AluJb SINE Alu 0 310 55 667 133 0 0 chr1 45334283 45334373 -236859291 - AluJ/FLAM SINE Alu -221 91 2 2124 119 0 0 chr1 45334383 45334678 -236858986 - AluSx SINE Alu -17 295 1 3249 242 99 83 chr1 45334678 45334828 -236858836 - L1MD2 LINE L1 -749 6421 6275 2035 125 0 0 chr1 45334828 45335125 -236858539 - AluSx SINE Alu -15 297 1 3249 242 99 83 chr1 45335125 45335548 -236858116 - L1MD2 LINE L1 -895 6275 5860 2156 100 3 0 chr1 45335548 45335861 -236857803 + AluSp SINE Alu 1 314 0 3249 242 99 83 chr1 45335861 45336483 -236857181 - L1MD2 LINE L1 -1310 5860 5112 1718 166 0 11 chr1 45336488 45336807 -236856857 - AluJb SINE Alu 0 316 1 545 125 0 0 chr1 45336807 45336887 -236856777 - L1M3 LINE L1 -693 5490 5411 528 290 23 28 chr1 45336886 45337103 -236856561 - L1MD2 LINE L1 -4366 2772 2557 * 372 300 33 33 chr1 45337194 45337344 -236856320 - L1M3d LINE L1 -5738 153 4 1078 277 47 76 chr1 45337363 45337661 -236856003 - L1MD2 LINE L1 -4542 2596 2291 1820 167 0 7 chr1 45337661 45337966 -236855698 - AluSx SINE Alu -9 303 1 1078 277 47 76 chr1 45337966 45338086 -236855578 - L1MD2 LINE L1 -4847 2291 2169 2314 98 0 0 chr1 45338086 45338393 -236855271 - AluSg SINE Alu -3 307 1 1078 277 47 76 chr1 45338393 45338790 -236854874 - L1MD2 LINE L1 -4969 2169 1803 2006 122 0 0 chr1 45338790 45339111 -236854553 + AluSg SINE Alu 1 321 0 1078 277 47 76 chr1 45339111 45339202 -236854462 - L1MD2 LINE L1 -5335 1803 1711 334 255 21 96 chr1 45340056 45340362 -236853302 - L1MD2 LINE L1 -5308 1639 1281 2001 106 3 3 chr1 45340402 45340721 -236852943 - AluSq SINE Alu 0 319 1 983 299 24 45 chr1 45340941 45341403 -236852261 - L1MD2 LINE L1 -5616 1331 880 304 227 141 86 chr1 45341420 45341548 -236852116 - L2 LINE L2 -12 3260 3126 1996 105 27 3 chr1 45341621 45341916 -236851748 + AluSq SINE Alu 1 302 -11 765 203 0 0 chr1 45342060 45342193 -236851471 - FLAM_C SINE Alu 0 133 1 188 179 0 64 chr1 45342202 45342280 -236851384 + T-rich Low_complexity Low_complexity 4 76 0 197 200 60 0 chr1 45342457 45342507 -236851157 - L2 LINE L2 0 3313 3261 396 40 0 0 chr1 45342564 45342614 -236851050 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2017 102 4 0 chr1 45342622 45342896 -236850768 - AluSx SINE Alu -37 275 1 1923 117 10 3 chr1 45342931 45343222 -236850442 - AluY SINE Alu -18 293 1 242 262 16 0 chr1 45343287 45343348 -236850316 - MARNA DNA Mariner -237 349 288 2161 87 0 7 chr1 45343409 45343698 -236849966 - AluSx SINE Alu -24 288 2 2804 144 65 8 chr1 45343720 45344199 -236849465 + MLT2B2 LTR ERVL 10 515 0 22 35 0 0 chr1 45344214 45344243 -236849421 + AT_rich Low_complexity Low_complexity 1 29 0 461 223 33 16 chr1 45344249 45344370 -236849294 - MIR SINE MIR -4 258 136 959 112 0 0 chr1 45344373 45344507 -236849157 - AluJo SINE Alu -178 134 1 337 234 0 0 chr1 45344510 45344574 -236849090 - MIR SINE MIR -62 146 83 216 0 0 0 chr1 45344835 45344859 -236848805 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1763 105 11 15 chr1 45344876 45345143 -236848521 - AluSx SINE Alu -46 266 1 596 246 56 0 chr1 45345474 45345600 -236848064 + MIR SINE MIR 21 153 -109 1105 104 6 0 chr1 45345678 45345841 -236847823 - AluSq SINE Alu -18 295 132 835 278 165 35 chr1 45346279 45346848 -236846816 + L2 LINE L2 2017 2659 -655 1382 181 64 50 chr1 45346860 45347041 -236846623 - MLT1D LTR MaLR -140 365 188 2172 98 10 0 chr1 45347041 45347337 -236846327 - AluSq SINE Alu -14 299 1 1382 181 64 50 chr1 45347337 45347515 -236846149 - MLT1D LTR MaLR -317 188 1 2319 229 30 109 chr1 45347517 45348295 -236845369 - MLT1D-int LTR MaLR -2 1369 654 1355 176 37 7 chr1 45348322 45348485 -236845179 - AluJo SINE Alu -16 296 120 261 0 0 0 chr1 45348485 45348514 -236845150 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1355 176 37 7 chr1 45348514 45348622 -236845042 - AluJo SINE Alu -192 120 17 2275 197 49 68 chr1 45348651 45348911 -236844753 - MLT1D-int LTR MaLR -710 661 398 2057 129 3 0 chr1 45348911 45349222 -236844442 - AluSx SINE Alu 0 312 1 2275 197 49 68 chr1 45349222 45349611 -236844053 - MLT1D-int LTR MaLR -973 398 24 2150 172 26 97 chr1 45349619 45349689 -236843975 - MLT1D LTR MaLR 0 505 432 2331 91 0 0 chr1 45349689 45349997 -236843667 + AluSc SINE Alu 1 308 -1 2150 172 26 97 chr1 45349997 45350462 -236843202 - MLT1D LTR MaLR -73 432 8 315 316 24 60 chr1 45350466 45350716 -236842948 + L2 LINE L2 2656 2896 -418 424 293 93 7 chr1 45350953 45351093 -236842571 + L2 LINE L2 3162 3313 0 425 133 13 0 chr1 45351357 45351432 -236842232 + CT-rich Low_complexity Low_complexity 1 76 0 1581 135 78 11 chr1 45351551 45351832 -236841832 + AluJo SINE Alu 1 300 -12 848 131 7 51 chr1 45351918 45352055 -236841609 - FLAM_C SINE Alu -2 131 1 675 37 0 0 chr1 45352281 45352363 -236841301 + (TTATA)n Simple_repeat Simple_repeat 3 84 0 771 159 30 23 chr1 45352409 45352541 -236841123 - FLAM_C SINE Alu 0 133 1 398 294 51 101 chr1 45352699 45352805 -236840859 - L1ME LINE L1 -403 5718 5608 1797 160 0 0 chr1 45352805 45353093 -236840571 - AluJo SINE Alu -18 294 7 398 294 51 101 chr1 45353093 45353262 -236840402 - L1ME LINE L1 -513 5608 5457 847 169 38 0 chr1 45353284 45353444 -236840220 - FRAM SINE Alu -11 165 1 1625 123 7 67 chr1 45353449 45353640 -236840024 - AluSx SINE Alu 0 324 156 246 32 0 0 chr1 45353640 45353671 -236839993 + (TG)n Simple_repeat Simple_repeat 2 32 0 1625 123 7 67 chr1 45353671 45353803 -236839861 - AluSx SINE Alu -168 156 18 340 258 97 21 chr1 45353815 45353908 -236839756 - L1ME LINE L1 -681 5440 5341 1070 157 0 0 chr1 45353924 45354096 -236839568 - AluSg/x SINE Alu -4 306 135 201 39 0 0 chr1 45354283 45354309 -236839355 + (TG)n Simple_repeat Simple_repeat 1 26 0 870 139 0 0 chr1 45354444 45354573 -236839091 + FLAM_C SINE Alu 1 129 -14 24 32 0 0 chr1 45354573 45354604 -236839060 + AT_rich Low_complexity Low_complexity 1 31 0 359 268 60 66 chr1 45354604 45354787 -236838877 - L1ME LINE L1 -437 5684 5503 1729 118 65 18 chr1 45354842 45355121 -236838543 + AluSx SINE Alu 1 292 -20 1922 119 14 0 chr1 45355195 45355499 -236838165 - AluSx SINE Alu 0 308 1 747 178 113 38 chr1 45355703 45355888 -236837776 - MIR SINE MIR 0 262 64 2131 105 7 7 chr1 45355942 45356248 -236837416 - AluSc SINE Alu -3 306 1 2017 115 10 0 chr1 45357927 45358231 -236835433 - AluSq SINE Alu -6 307 1 900 128 0 0 chr1 45358242 45358367 -236835297 - AluSq/x SINE Alu -187 125 1 536 83 0 0 chr1 45358470 45358542 -236835122 - MER41B LTR ERV1 -85 550 479 21 36 0 0 chr1 45358573 45358601 -236835063 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 45358936 45358961 -236834703 + AT_rich Low_complexity Low_complexity 1 25 0 1578 174 41 3 chr1 45358962 45359256 -236834408 - AluJo SINE Alu -6 306 2 557 247 68 39 chr1 45359528 45359743 -236833921 + MLT1L LTR MaLR 110 394 -200 740 137 21 215 chr1 45359753 45359801 -236833863 - MER5A DNA MER1_type 0 189 133 2009 105 0 4 chr1 45359801 45360078 -236833586 - AluSq SINE Alu -16 297 22 740 137 21 215 chr1 45360078 45360187 -236833477 - MER5A DNA MER1_type -56 133 89 813 165 0 8 chr1 45360187 45360320 -236833344 - FLAM_C SINE Alu -1 132 1 740 137 21 215 chr1 45360320 45360394 -236833270 - MER5A DNA MER1_type -100 89 2 560 228 86 20 chr1 45360403 45360600 -236833064 + MLT1L LTR MaLR 404 613 -2 2206 93 7 7 chr1 45360756 45361066 -236832598 - AluSg SINE Alu 0 310 1 1874 109 0 25 chr1 45361197 45361482 -236832182 - AluSx SINE Alu -3 309 32 241 108 0 0 chr1 45361567 45361604 -236832060 - MADE1 DNA Mariner -12 68 32 7305 119 17 30 chr1 45361836 45362060 -236831604 - L1MA3 LINE L1 0 7724 7499 1565 165 47 7 chr1 45362060 45362339 -236831325 - AluJb SINE Alu -21 291 2 7305 119 17 30 chr1 45362339 45362828 -236830836 - L1MA3 LINE L1 -225 7499 7005 2322 88 0 0 chr1 45362828 45363133 -236830531 - AluY SINE Alu 0 311 7 7305 119 17 30 chr1 45363133 45363659 -236830005 - L1MA3 LINE L1 -719 7005 6474 1768 109 0 8 chr1 45363659 45363916 -236829748 + AluSx SINE Alu 58 312 0 7305 119 17 30 chr1 45363916 45364690 -236828974 - L1MA3 LINE L1 -1250 6474 5735 1916 135 0 3 chr1 45364690 45364992 -236828672 + AluSx SINE Alu 1 301 0 318 128 23 0 chr1 45365000 45365052 -236828612 - Alu SINE Alu -261 41 1 3293 150 30 8 chr1 45365053 45365531 -236828133 - L1MA3 LINE L1 -3396 4169 3703 2136 118 0 0 chr1 45365531 45365828 -236827836 - AluSx SINE Alu -11 301 5 3293 150 30 8 chr1 45365828 45366343 -236827321 - L1MA3 LINE L1 -3862 3703 3158 * 8691 137 25 21 chr1 45366337 45366424 -236827240 + L1M1 LINE L1 129 214 -7351 2485 65 0 0 chr1 45366424 45366732 -236826932 - AluY SINE Alu 0 311 4 2097 118 3 0 chr1 45366735 45367032 -236826632 - AluSx SINE Alu -14 298 1 8691 137 25 21 chr1 45367032 45368286 -236825378 + L1M1 LINE L1 215 1480 -6085 1144 306 47 37 chr1 45368333 45368842 -236824822 - LTR33 LTR ERVL -7 514 1 1264 193 20 16 chr1 45368842 45369147 -236824517 - HAL1 LINE L1 -835 1672 1367 2403 221 70 29 chr1 45369212 45369936 -236823728 + HAL1 LINE L1 1754 2507 0 2676 139 17 5 chr1 45369954 45370358 -236823306 + L1M1 LINE L1 14 422 -7143 758 135 9 0 chr1 45370747 45370858 -236822806 + FLAM_C SINE Alu 11 122 -21 2015 138 0 3 chr1 45370890 45371188 -236822476 + AluJb SINE Alu 1 297 -15 691 181 0 26 chr1 45371625 45371741 -236821923 + FLAM_C SINE Alu 14 126 -17 183 80 0 0 chr1 45371777 45371802 -236821862 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 822 31 0 0 chr1 45371957 45372054 -236821610 + L1PA2 LINE L1 2 98 -6048 * 38326 25 0 0 chr1 45372052 45377299 -236816365 + L1PA2 LINE L1 908 6155 0 2254 86 3 3 chr1 45377322 45377612 -236816052 + AluSc SINE Alu 1 290 -19 956 273 102 13 chr1 45377833 45378207 -236815457 - MLT1I LTR MaLR 0 409 3 1037 231 0 45 chr1 45378208 45378450 -236815214 - MIR SINE MIR -26 236 6 180 0 0 0 chr1 45378702 45378722 -236814942 + (TTG)n Simple_repeat Simple_repeat 2 21 0 611 231 0 0 chr1 45378761 45378869 -236814795 - FLAM_A SINE Alu -33 109 2 265 193 35 18 chr1 45379199 45379256 -236814408 + L2 LINE L2 2678 2735 -579 207 269 0 0 chr1 45379243 45379295 -236814369 + L2 LINE L2 3200 3251 -21 * 231 36 0 0 chr1 45379307 45379335 -236814329 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 533 172 0 10 chr1 45379805 45379904 -236813760 + MIR SINE MIR 164 261 -1 355 274 71 127 chr1 45380080 45380712 -236812952 - L1M2 LINE L1 -5723 1126 530 327 104 0 0 chr1 45381007 45381055 -236812609 + (TG)n Simple_repeat Simple_repeat 1 48 0 2463 75 10 0 chr1 45382372 45382680 -236810984 - AluSq SINE Alu -2 311 1 1855 152 0 32 chr1 45383433 45383748 -236809916 + AluJb SINE Alu 1 305 -7 2102 144 3 52 chr1 45384267 45384552 -236809112 + MER2 DNA MER2_type 1 266 -79 1091 152 6 0 chr1 45384552 45384717 -236808947 - FRAM SINE Alu 0 166 1 2102 144 3 52 chr1 45384717 45384793 -236808871 + MER2 DNA MER2_type 266 344 -1 747 167 9 0 chr1 45384926 45385040 -236808624 - FLAM_C SINE Alu -27 116 2 2210 112 26 0 chr1 45385396 45385701 -236807963 - AluSq SINE Alu 0 313 1 1840 113 109 0 chr1 45385985 45386260 -236807404 - AluSx SINE Alu -6 306 2 2268 90 7 3 chr1 45386959 45387258 -236806406 - AluSx SINE Alu -12 300 1 550 285 79 69 chr1 45387620 45387978 -236805686 - L2 LINE L2 -6 3266 2907 675 144 32 16 chr1 45389182 45389307 -236804357 + L2 LINE L2 3187 3313 0 1025 256 193 7 chr1 45389441 45389882 -236803782 - LTR33A LTR ERVL 0 523 1 1879 155 0 16 chr1 45390320 45390629 -236803035 - AluSx SINE Alu -6 306 3 22 0 0 0 chr1 45391326 45391348 -236802316 + AT_rich Low_complexity Low_complexity 1 22 0 1854 162 13 7 chr1 45393280 45393582 -236800082 - AluJb SINE Alu -8 304 1 315 304 166 0 chr1 45393613 45393794 -236799870 - L1ME4a LINE L1 -201 5920 5710 5700 108 241 96 chr1 45394099 45395582 -236798082 + pTR5 LTR ERV1 741 2438 0 265 218 205 0 chr1 45395758 45395836 -236797828 + L2 LINE L2 3144 3237 -35 420 314 79 0 chr1 45397156 45397296 -236796368 + MIR3 SINE MIR 52 202 -6 1087 142 50 46 chr1 45397400 45397618 -236796046 - MER20 DNA MER1_type 0 219 1 221 0 0 33 chr1 45398214 45398244 -236795420 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2150 104 0 10 chr1 45399247 45399544 -236794120 + AluY SINE Alu 1 294 -17 844 187 139 12 chr1 45399590 45399756 -236793908 + AluJo SINE Alu 114 300 -12 2314 99 3 0 chr1 45399971 45400274 -236793390 - AluSx SINE Alu -8 304 1 393 155 14 0 chr1 45401176 45401247 -236792417 - L1MA9 LINE L1 -18 6294 6223 898 132 0 0 chr1 45401829 45401950 -236791714 + FLAM_C SINE Alu 1 121 -22 207 0 0 0 chr1 45401950 45401973 -236791691 + (TAA)n Simple_repeat Simple_repeat 2 24 0 207 225 0 0 chr1 45402087 45402127 -236791537 - MIR SINE MIR -97 111 72 389 299 145 42 chr1 45402616 45402857 -236790807 + L3 LINE CR1 1310 1575 -2 669 304 75 31 chr1 45403671 45403964 -236789700 - L3 LINE CR1 -24 1553 1248 428 334 112 45 chr1 45404022 45404336 -236789328 - L2 LINE L2 -4 3268 2934 245 298 126 13 chr1 45404503 45404654 -236789010 - L1ME4a LINE L1 -3 6118 5951 180 0 0 0 chr1 45404655 45404675 -236788989 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 871 211 6 19 chr1 45404678 45404839 -236788825 - AluJo SINE Alu -32 280 122 871 178 0 0 chr1 45405102 45405231 -236788433 - FLAM_A SINE Alu -3 130 2 300 369 0 0 chr1 45405271 45405374 -236788290 - L2 LINE L2 -31 3241 3139 851 162 0 0 chr1 45405437 45405554 -236788110 + AluJo SINE Alu 1 117 -185 2067 116 0 47 chr1 45405569 45405889 -236787775 - AluSx SINE Alu -7 305 1 252 143 0 0 chr1 45405891 45405933 -236787731 + (T)n Simple_repeat Simple_repeat 1 42 0 1213 170 5 0 chr1 45405958 45406158 -236787506 + AluJo SINE Alu 109 309 -3 879 159 106 34 chr1 45406199 45406406 -236787258 + L1MC5 LINE L1 7690 7911 -50 568 280 116 72 chr1 45406456 45407138 -236786526 - L2 LINE L2 -206 3066 2339 180 244 58 35 chr1 45407165 45407251 -236786413 - L2 LINE L2 -541 2773 2686 284 303 34 50 chr1 45407285 45407404 -236786260 + L2 LINE L2 3197 3313 0 2395 73 0 13 chr1 45407407 45407720 -236785944 + AluY SINE Alu 1 309 -2 215 192 68 41 chr1 45407742 45407815 -236785849 - L2 LINE L2 -748 2566 2492 1854 164 19 25 chr1 45408628 45408875 -236784789 - L1MA4 LINE L1 -6 6294 6048 1572 109 9 5 chr1 45408875 45409095 -236784569 - AluSg/x SINE Alu -6 304 84 1854 164 19 25 chr1 45409095 45409213 -236784451 - L1MA4 LINE L1 -252 6048 5931 433 39 0 0 chr1 45409218 45409269 -236784395 + L1MA4 LINE L1 5834 5884 -416 2108 126 3 0 chr1 45409653 45409955 -236783709 + AluSx SINE Alu 1 303 -9 403 294 34 0 chr1 45410117 45410236 -236783428 - MIR SINE MIR -93 169 47 1713 184 3 7 chr1 45410246 45410551 -236783113 + AluJo SINE Alu 1 304 -8 1832 137 13 16 chr1 45411636 45411942 -236781722 + AluJo SINE Alu 1 305 -7 1367 160 8 42 chr1 45412729 45412991 -236780673 + L1MB7 LINE L1 5876 6128 -56 1890 156 3 19 chr1 45413632 45413940 -236779724 + AluJo SINE Alu 1 303 -9 29 47 0 0 chr1 45414127 45414170 -236779494 + AT_rich Low_complexity Low_complexity 1 43 0 201 333 65 0 chr1 45414976 45415069 -236778595 + MIR3 SINE MIR 110 208 0 301 229 72 0 chr1 45415735 45415818 -236777846 + MER5A DNA MER1_type 51 139 -50 1652 178 3 14 chr1 45416390 45416677 -236776987 + AluJb SINE Alu 1 284 -28 234 220 0 17 chr1 45416861 45416920 -236776744 + (TA)n Simple_repeat Simple_repeat 1 58 0 696 233 92 62 chr1 45418380 45418780 -236774884 - L1ME4a LINE L1 -218 5903 5492 894 219 103 13 chr1 45420864 45421097 -236772567 + MIR SINE MIR 1 254 -8 327 310 84 84 chr1 45422131 45422344 -236771320 - MIR SINE MIR -2 260 48 581 289 88 54 chr1 45424765 45425522 -236768142 + HAL1b LINE L1 53 835 -513 2460 85 0 13 chr1 45425698 45426014 -236767650 - AluSx SINE Alu 0 312 1 1111 250 157 43 chr1 45426719 45427645 -236766019 + L1MC4 LINE L1 6898 8036 -6 261 98 0 0 chr1 45429312 45429353 -236764311 + (TG)n Simple_repeat Simple_repeat 2 42 0 246 339 17 17 chr1 45430013 45430131 -236763533 - MIR SINE MIR -71 137 20 359 258 247 5 chr1 45430432 45430626 -236763038 + MIR SINE MIR 3 243 -19 455 237 301 0 chr1 45430670 45430932 -236762732 - L2 LINE L2 -6 3307 2967 352 284 142 37 chr1 45430909 45431071 -236762593 - L2 LINE L2 -1035 2279 2101 * 504 316 97 50 chr1 45431070 45431143 -236762521 - L2 LINE L2 -65 3207 3139 1955 137 20 3 chr1 45431143 45431443 -236762221 - AluJo SINE Alu -7 305 1 504 316 97 50 chr1 45431443 45431730 -236761934 - L2 LINE L2 -133 3139 2830 1263 94 128 15 chr1 45432204 45432321 -236761343 + MER30 DNA MER1_type 1 103 -127 1819 123 60 26 chr1 45432321 45432623 -236761041 - AluSx SINE Alu 0 312 1 1263 94 128 15 chr1 45432623 45432708 -236760956 + MER30 DNA MER1_type 103 226 -4 708 303 86 60 chr1 45432712 45433411 -236760253 - L2 LINE L2 -781 2533 1817 2182 59 50 23 chr1 45433490 45433793 -236759871 + AluY SINE Alu 1 311 0 2129 112 10 0 chr1 45434055 45434349 -236759315 + AluSq SINE Alu 2 298 -15 1776 102 0 24 chr1 45434372 45434618 -236759046 + AluSc SINE Alu 21 260 -49 823 108 0 0 chr1 45434627 45434738 -236758926 + AluSc SINE Alu 1 111 -198 336 176 40 0 chr1 45434742 45434816 -236758848 - L1M4 LINE L1 -1449 4697 4621 1343 135 5 5 chr1 45434849 45435056 -236758608 + AluSg/x SINE Alu 103 309 -3 1529 174 33 7 chr1 45435075 45435384 -236758280 + AluJb SINE Alu 1 316 0 260 265 70 94 chr1 45435476 45435635 -236758029 + L1ME3A LINE L1 2236 2386 -3760 2154 119 77 3 chr1 45435635 45435971 -236757693 + MER46B DNA MER2_type 1 236 0 260 265 70 94 chr1 45435971 45436098 -236757566 + L1ME3A LINE L1 2386 2515 -3631 459 100 0 0 chr1 45436135 45436205 -236757459 + (TG)n Simple_repeat Simple_repeat 1 70 0 1689 223 102 53 chr1 45436205 45436227 -236757437 + L1ME3A LINE L1 4624 4643 -1527 2339 101 0 3 chr1 45436227 45436533 -236757131 + AluSg SINE Alu 2 306 -4 1689 223 102 53 chr1 45436533 45436612 -236757052 + L1ME3A LINE L1 4643 4717 -1453 2245 92 3 0 chr1 45436612 45436927 -236756737 + AluSp SINE Alu 1 316 0 1689 223 102 53 chr1 45436927 45437189 -236756475 + L1ME3A LINE L1 4717 4965 -1205 2006 142 0 0 chr1 45437189 45437477 -236756187 + AluSx SINE Alu 1 288 -24 1689 223 102 53 chr1 45437477 45437912 -236755752 + L1ME3A LINE L1 4965 5377 -793 279 0 0 0 chr1 45437912 45437943 -236755721 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1689 223 102 53 chr1 45437943 45438306 -236755358 + L1ME3A LINE L1 5377 5834 -336 250 241 0 0 chr1 45438546 45438604 -236755060 + L1MC5 LINE L1 7301 7358 -603 2240 104 3 3 chr1 45438616 45438914 -236754750 - AluSx SINE Alu -14 298 1 563 252 35 58 chr1 45438956 45439233 -236754431 - L1MC4 LINE L1 -178 7724 7381 263 301 41 20 chr1 45439508 45439654 -236754010 + HERVL LTR ERVL 1189 1337 -4317 851 146 67 67 chr1 45439730 45439894 -236753770 - FRAM SINE Alu -9 167 4 1281 309 70 71 chr1 45440008 45440421 -236753243 + HERVL LTR ERVL 1635 2047 -3717 2014 148 0 16 chr1 45440421 45440738 -236752926 - AluSx SINE Alu 0 312 1 1281 309 70 71 chr1 45440738 45441422 -236752242 + HERVL LTR ERVL 2047 2731 -3033 1359 246 125 57 chr1 45441425 45441672 -236751992 + MLT1G1 LTR MaLR 1 230 -365 1988 112 33 43 chr1 45441672 45441975 -236751689 - AluSq SINE Alu -13 300 1 1359 246 125 57 chr1 45441975 45442239 -236751425 + MLT1G1 LTR MaLR 230 547 -48 434 333 96 16 chr1 45442309 45442558 -236751106 + HERVL LTR ERVL 2885 3153 -2501 1071 223 64 199 chr1 45442749 45443136 -236750528 - HAL1 LINE L1 -1759 748 310 186 43 0 0 chr1 45443136 45443159 -236750505 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2325 65 0 7 chr1 45443164 45443455 -236750209 - AluY SINE Alu -22 289 1 1026 105 0 0 chr1 45443457 45443590 -236750074 - AluSq/x SINE Alu -179 133 1 1071 223 64 199 chr1 45443590 45443923 -236749741 - HAL1 LINE L1 -2202 305 4 311 244 0 13 chr1 45444552 45444630 -236749034 - L1ME3A LINE L1 0 6170 6094 1106 249 48 7 chr1 45444801 45445090 -236748574 - LTR16C LTR ERVL -3 488 188 2399 80 0 0 chr1 45446092 45446381 -236747283 + AluSc SINE Alu 1 289 -20 1066 133 44 28 chr1 45446672 45446853 -236746811 - AluJb SINE Alu -9 303 120 2333 87 3 0 chr1 45446872 45447160 -236746504 - AluSp SINE Alu -24 289 1 566 167 10 0 chr1 45447160 45447256 -236746408 - FLAM_A SINE Alu -3 139 43 1877 115 72 7 chr1 45447346 45447624 -236746040 - AluSx SINE Alu -16 296 1 354 213 0 38 chr1 45448045 45448069 -236745595 - MER116 DNA Mariner -3 77 54 2141 108 14 0 chr1 45448069 45448365 -236745299 - AluSx SINE Alu -12 300 1 354 213 0 38 chr1 45448365 45448420 -236745244 - MER116 DNA Mariner -26 54 1 384 278 74 23 chr1 45448524 45448700 -236744964 - L1ME3A LINE L1 -2012 5796 5612 1018 168 12 0 chr1 45448755 45448916 -236744748 + AluJb SINE Alu 134 296 -16 1869 152 0 10 chr1 45448929 45449218 -236744446 + AluJb SINE Alu 13 298 -14 2146 122 3 0 chr1 45449411 45449706 -236743958 - AluSg SINE Alu -14 296 1 348 85 0 0 chr1 45449709 45449756 -236743908 - Alu SINE Alu -2 300 254 256 260 0 0 chr1 45449785 45449858 -236743806 + HsTC2 DNA Tc2 1824 1896 -2 374 288 77 81 chr1 45450033 45450323 -236743341 - L1ME3A LINE L1 -1117 5029 4740 1641 197 113 3 chr1 45450323 45450678 -236742986 + MSTD LTR MaLR 1 394 -2 374 288 77 81 chr1 45450678 45451072 -236742592 - L1ME3A LINE L1 -1406 4740 4346 2026 151 0 3 chr1 45451072 45451376 -236742288 - AluSg SINE Alu -7 303 1 374 288 77 81 chr1 45451376 45451609 -236742055 - L1ME3A LINE L1 -1800 4346 4114 1900 144 84 29 chr1 45451722 45451926 -236741738 - MLT1A1 LTR MaLR 0 365 133 3595 104 43 8 chr1 45451926 45452414 -236741250 + LTR10B LTR ERV1 1 505 0 1900 144 84 29 chr1 45452414 45452555 -236741109 - MLT1A1 LTR MaLR -232 133 1 400 315 74 21 chr1 45452660 45452990 -236740674 - L1ME3A LINE L1 -2195 3951 3607 1612 173 35 36 chr1 45453616 45454006 -236739658 + MLT1B LTR MaLR 1 466 -1 253 316 88 57 chr1 45454013 45454333 -236739331 - L1M4 LINE L1 -1206 4940 4596 2281 121 0 0 chr1 45454333 45454631 -236739033 - AluSx SINE Alu -14 298 1 253 316 88 57 chr1 45454631 45454833 -236738831 - L1M4 LINE L1 -1550 4596 4402 770 220 85 11 chr1 45454958 45455135 -236738529 + MIR SINE MIR 35 224 -38 449 159 43 116 chr1 45455161 45455228 -236738436 - MLT1A2 LTR MaLR 0 390 335 1993 96 7 4 chr1 45455228 45455536 -236738128 + AluSx SINE Alu 1 309 0 449 159 43 116 chr1 45455536 45455605 -236738059 - MLT1A2 LTR MaLR -55 335 263 464 198 27 54 chr1 45455619 45455730 -236737934 - MLT1A2 LTR MaLR -266 108 1 277 266 87 62 chr1 45455830 45456071 -236737593 + L1ME4a LINE L1 5875 6121 0 300 241 107 134 chr1 45456340 45456780 -236736884 - L1M2 LINE L1 -5982 867 440 191 324 61 68 chr1 45457718 45457866 -236735798 - MIR SINE MIR -57 205 59 564 221 110 66 chr1 45457875 45458249 -236735415 + L1MC4 LINE L1 6774 7146 -815 1978 114 0 47 chr1 45458258 45458580 -236735084 + AluSx SINE Alu 1 308 0 871 270 119 71 chr1 45458621 45459321 -236734343 + L1MC4 LINE L1 7238 7970 -72 2077 92 50 0 chr1 45459405 45459688 -236733976 - AluSg SINE Alu -13 297 1 1127 133 0 48 chr1 45460151 45460339 -236733325 + AluSg/x SINE Alu 133 311 -1 2521 70 3 6 chr1 45460814 45461126 -236732538 - AluY SINE Alu 0 311 1 266 0 29 0 chr1 45462013 45462047 -236731617 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6349 49 1 0 chr1 45462050 45462782 -236730882 - L1PA7 LINE L1 -13 6141 5409 236 178 22 0 chr1 45463635 45463680 -236729984 + (CTCTG)n Simple_repeat Simple_repeat 2 47 0 279 335 52 26 chr1 45464509 45464664 -236729000 - MIR SINE MIR -100 162 4 2175 130 0 10 chr1 45464942 45465249 -236728415 - AluSx SINE Alu -8 304 1 679 287 84 54 chr1 45465260 45465595 -236728069 - MLT1J2 LTR MaLR -105 345 1 244 255 117 0 chr1 45466475 45466569 -236727095 + L1ME LINE L1 5433 5537 -2271 352 290 86 16 chr1 45466587 45466773 -236726891 + L1ME LINE L1 5621 5819 -302 617 235 8 0 chr1 45466782 45466901 -236726763 + FLAM_A SINE Alu 1 120 -22 25 31 0 0 chr1 45466901 45466933 -236726731 + AT_rich Low_complexity Low_complexity 1 32 0 2211 119 0 10 chr1 45466992 45467130 -236726534 + AluSx SINE Alu 1 139 -173 2293 110 0 0 chr1 45467130 45467429 -236726235 + AluSc SINE Alu 1 299 -10 2211 119 0 10 chr1 45467429 45467593 -236726071 + AluSx SINE Alu 139 300 -12 2053 132 7 7 chr1 45467944 45468233 -236725431 + AluJb SINE Alu 3 291 -21 1450 155 117 11 chr1 45468350 45468487 -236725177 - AluJo SINE Alu -20 292 171 291 28 0 0 chr1 45468487 45468523 -236725141 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1450 155 117 11 chr1 45468523 45468649 -236725015 - AluJo SINE Alu -141 171 1 2198 101 24 0 chr1 45470262 45470559 -236723105 - AluSx SINE Alu -8 304 1 1443 187 75 0 chr1 45470583 45470734 -236722930 - AluJo SINE Alu -24 288 150 402 21 0 0 chr1 45470734 45470781 -236722883 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1443 187 75 0 chr1 45470781 45470897 -236722767 - AluJo SINE Alu -162 150 1 844 244 27 36 chr1 45471229 45471362 -236722302 - MER58A DNA MER1_type -2196 224 92 1158 177 9 58 chr1 45471362 45471588 -236722076 - MER20 DNA MER1_type -4 215 1 844 244 27 36 chr1 45471588 45471679 -236721985 - MER58A DNA MER1_type -2328 92 2 408 208 0 28 chr1 45471904 45472010 -236721654 - L1MC5 LINE L1 -216 7745 7643 493 205 87 0 chr1 45472644 45472771 -236720893 + L2 LINE L2 2154 2291 -1023 916 223 45 45 chr1 45472809 45473119 -236720545 + L2 LINE L2 2997 3306 -7 353 206 0 0 chr1 45473336 45473404 -236720260 - AluJ/monomer SINE Alu -1 301 234 1669 137 3 43 chr1 45673404 45673704 -236519960 - AluJb SINE Alu -24 288 1 684 214 104 45 chr1 45673705 45673815 -236519849 - MER58A DNA MER1_type -2207 213 111 1952 118 7 0 chr1 45673815 45674122 -236519542 + AluSx SINE Alu 1 309 0 684 214 104 45 chr1 45674122 45674209 -236519455 - MER58A DNA MER1_type -2309 111 1 244 320 10 31 chr1 45675086 45675183 -236518481 - MIR3 SINE MIR -99 109 15 4615 117 44 48 chr1 45675533 45675823 -236517841 - Tigger1 DNA MER2_type -44 2374 2084 225 65 0 0 chr1 45675823 45675854 -236517810 + (TG)n Simple_repeat Simple_repeat 2 32 0 2225 89 0 0 chr1 45675854 45676145 -236517519 - AluSq SINE Alu -22 291 1 4615 117 44 48 chr1 45676145 45676171 -236517493 - Tigger1 DNA MER2_type -333 2085 2060 1568 154 4 29 chr1 45676171 45676444 -236517220 - AluJb SINE Alu -46 266 1 4615 117 44 48 chr1 45676444 45676921 -236516743 - Tigger1 DNA MER2_type -358 2060 1582 243 79 0 0 chr1 45676928 45676966 -236516698 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 956 185 0 0 chr1 45676966 45677122 -236516542 - AluJb SINE Alu -27 285 130 3148 151 50 22 chr1 45677501 45677743 -236515921 - MER6A DNA MER2_type -263 602 368 2052 103 0 39 chr1 45677743 45678054 -236515610 + AluSc SINE Alu 1 299 -10 2064 101 14 0 chr1 45678054 45678342 -236515322 + AluSx SINE Alu 1 292 -20 3148 151 50 22 chr1 45678342 45678654 -236515010 - MER6A DNA MER2_type -496 369 31 337 125 0 0 chr1 45678995 45679043 -236514621 + Tigger1 DNA MER2_type 6 53 -2365 * 823 122 149 0 chr1 45679038 45679186 -236514478 + Tigger1 DNA MER2_type 320 489 -1929 1128 158 57 108 chr1 45679186 45679483 -236514181 + AluJo SINE Alu 1 282 -30 4915 99 129 21 chr1 45679493 45679551 -236514113 + Tigger1 DNA MER2_type 476 526 -1892 2110 97 0 10 chr1 45679551 45679850 -236513814 + AluSx SINE Alu 1 296 -16 4915 99 129 21 chr1 45679850 45680592 -236513072 + Tigger1 DNA MER2_type 526 1362 -1056 2212 94 0 0 chr1 45680592 45680890 -236512774 + AluSx SINE Alu 1 298 -14 413 302 26 0 chr1 45681023 45681139 -236512525 + L2 LINE L2 3195 3313 0 219 258 30 0 chr1 45683394 45683460 -236510204 + L3b LINE CR1 1316 1383 -200 252 260 27 0 chr1 45683976 45684049 -236509615 + MIR3 SINE MIR 91 165 -43 259 282 0 51 chr1 45684194 45684272 -236509392 - MIR SINE MIR -76 132 59 190 244 174 35 chr1 45684282 45684368 -236509296 - L2 LINE L2 -18 3254 3157 293 287 65 0 chr1 45684901 45685009 -236508655 - MIR SINE MIR -54 208 94 387 0 0 0 chr1 45685045 45685088 -236508576 + (TG)n Simple_repeat Simple_repeat 2 44 0 339 232 75 33 chr1 45685302 45685452 -236508212 + MIR3 SINE MIR 1 153 -79 2418 56 0 3 chr1 45685788 45686093 -236507571 - AluY SINE Alu -2 309 6 27 0 0 0 chr1 45686812 45686839 -236506825 + AT_rich Low_complexity Low_complexity 1 27 0 1925 134 3 3 chr1 45686839 45687131 -236506533 - AluSx SINE Alu -20 292 1 1092 287 72 65 chr1 45687758 45688483 -236505181 + HAL1 LINE L1 964 1693 -814 354 202 124 39 chr1 45689039 45689168 -236504496 + MIR SINE MIR 76 215 -47 232 133 0 0 chr1 45689172 45689236 -236504428 - AluJb SINE Alu 0 318 255 1499 127 0 0 chr1 45689240 45689453 -236504211 - AluJb SINE Alu -99 213 1 2428 58 0 16 chr1 45689777 45690090 -236503574 + AluSc SINE Alu 1 308 -1 241 274 185 7 chr1 45690157 45690303 -236503361 - L2 LINE L2 -1 3271 3100 401 310 26 0 chr1 45690378 45690494 -236503170 + L2 LINE L2 3195 3313 0 405 311 21 24 chr1 45691336 45691506 -236502158 + MIR SINE MIR 25 186 -76 1692 144 0 18 chr1 45693364 45693642 -236500022 + AluJb SINE Alu 1 273 -39 21 36 0 0 chr1 45694316 45694344 -236499320 + AT_rich Low_complexity Low_complexity 1 28 0 540 270 38 13 chr1 45695685 45695844 -236497820 + MIR3 SINE MIR 35 197 -11 215 344 16 0 chr1 45696149 45696213 -236497451 + MIR SINE MIR 174 238 -24 290 122 0 41 chr1 45697270 45697319 -236496345 - L2 LINE L2 0 3272 3226 1994 112 13 13 chr1 45697433 45697736 -236495928 - AluSx SINE Alu -9 303 1 2096 104 3 10 chr1 45701783 45702082 -236491582 + AluSx SINE Alu 1 297 -15 401 182 0 43 chr1 45702127 45702314 -236491350 + (TA)n Simple_repeat Simple_repeat 1 179 0 330 233 0 0 chr1 45704601 45704661 -236489003 + L2 LINE L2 3213 3272 0 2191 86 7 3 chr1 45704699 45704991 -236488673 - AluSg SINE Alu -17 293 1 787 168 0 0 chr1 45705020 45705145 -236488519 - FLAM_C SINE Alu -8 125 1 1421 177 8 4 chr1 45705297 45705557 -236488107 + AluJo SINE Alu 30 290 -22 317 292 100 23 chr1 45705718 45705848 -236487816 + L2 LINE L2 2915 3054 -218 356 190 13 0 chr1 45705889 45705968 -236487696 + (CA)n Simple_repeat Simple_repeat 2 81 0 1765 157 3 7 chr1 45705968 45706262 -236487402 - AluJb SINE Alu -11 301 9 772 201 52 13 chr1 45706273 45706427 -236487237 - FRAM SINE Alu -11 165 6 413 323 81 0 chr1 45706504 45706628 -236487036 + L2 LINE L2 3137 3270 -2 330 303 91 48 chr1 45706963 45707128 -236486536 - MIR3 SINE MIR -14 194 23 388 305 108 35 chr1 45708536 45708739 -236484925 + L2 LINE L2 3055 3272 0 516 262 16 8 chr1 45711391 45711513 -236482151 + L2 LINE L2 3191 3313 0 203 171 0 0 chr1 45711743 45711784 -236481880 + A-rich Low_complexity Low_complexity 1 41 0 368 250 74 19 chr1 45712578 45712686 -236480978 - MIR SINE MIR -105 157 44 297 252 168 28 chr1 45712761 45712868 -236480796 + MIR SINE MIR 123 244 -18 440 231 16 66 chr1 45713022 45713143 -236480521 + MIR SINE MIR 84 198 -64 1729 146 10 27 chr1 45713482 45713783 -236479881 + AluJb SINE Alu 1 296 -16 2033 112 17 0 chr1 45713783 45714077 -236479587 + AluSq SINE Alu 1 299 -14 223 387 80 7 chr1 45716218 45716368 -236477296 - L2 LINE L2 -212 3060 2900 602 262 11 78 chr1 45717513 45717621 -236476043 + MER5B DNA MER1_type 1 92 -86 1728 115 166 27 chr1 45717621 45717917 -236475747 - MER1B DNA MER1_type 0 337 1 602 262 11 78 chr1 45717917 45717999 -236475665 + MER5B DNA MER1_type 92 178 0 492 207 149 32 chr1 45718010 45718174 -236475490 + MER5A DNA MER1_type 4 189 0 303 232 0 0 chr1 45719218 45719274 -236474390 - L2 LINE L2 -14 3299 3244 1553 183 142 60 chr1 45719546 45719713 -236473951 + L1MB1 LINE L1 5666 5818 -350 1442 169 26 52 chr1 45719713 45720020 -236473644 + AluJo SINE Alu 1 299 -13 2067 136 0 3 chr1 45720020 45720330 -236473334 + AluJb SINE Alu 1 309 -3 1553 183 142 60 chr1 45720330 45720408 -236473256 + L1MB1 LINE L1 5818 5888 -280 2163 145 6 11 chr1 45720408 45720773 -236472891 - MER47A DNA MER2_type 0 366 4 1553 183 142 60 chr1 45720773 45720990 -236472674 + L1MB1 LINE L1 5888 6168 0 609 272 75 6 chr1 45721482 45721655 -236472009 + L2 LINE L2 3129 3313 0 323 325 86 13 chr1 45721963 45722114 -236471550 + L2 LINE L2 2871 3032 -240 191 306 51 71 chr1 45722139 45722237 -236471427 + L2 LINE L2 3173 3268 -4 1378 122 19 9 chr1 45722304 45722517 -236471147 + MER20 DNA MER1_type 1 215 -4 682 217 8 0 chr1 45723592 45723721 -236469943 + FLAM_A SINE Alu 1 130 -3 2696 10 0 0 chr1 45723722 45724030 -236469634 + AluYa5 SINE Alu 1 300 -11 1707 95 0 0 chr1 45724295 45724517 -236469147 + AluSq SINE Alu 1 222 -91 216 0 0 0 chr1 45724953 45724977 -236468687 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 422 328 102 8 chr1 45725500 45725744 -236467920 + L2 LINE L2 2453 2719 -595 1774 166 10 10 chr1 45725744 45726046 -236467618 + AluJo SINE Alu 1 302 -10 2116 151 58 43 chr1 45726052 45726159 -236467505 + L1MC2 LINE L1 5873 5977 -367 2190 114 3 0 chr1 45726159 45726465 -236467199 + AluSx SINE Alu 1 307 -5 2116 151 58 43 chr1 45726465 45726822 -236466842 + L1MC2 LINE L1 5977 6344 0 735 288 181 4 chr1 45726822 45727312 -236466352 + L2 LINE L2 2712 3310 -3 376 191 0 0 chr1 45727444 45727512 -236466152 + MIR SINE MIR 1 68 -194 1989 142 0 3 chr1 45727512 45727821 -236465843 + AluJo SINE Alu 1 308 -4 567 276 29 6 chr1 45728101 45728271 -236465393 - MIR SINE MIR -42 220 47 676 194 8 16 chr1 45728472 45728601 -236465063 + FLAM_A SINE Alu 1 128 -5 186 358 156 0 chr1 45728604 45728713 -236464951 + MIR SINE MIR 131 256 -6 368 215 68 110 chr1 45729363 45729408 -236464256 + MIR SINE MIR 92 137 -125 2038 118 14 0 chr1 45729408 45729704 -236463960 - AluSx SINE Alu -12 300 1 368 215 68 110 chr1 45729704 45729821 -236463843 + MIR SINE MIR 137 247 -15 3101 107 14 0 chr1 45729827 45730249 -236463415 - MSTA LTR MaLR 0 428 1 483 244 17 17 chr1 45730519 45730638 -236463026 - MER103 DNA DNA -45 121 3 198 238 0 0 chr1 45731132 45731174 -236462490 + L2 LINE L2 3219 3260 -12 307 284 74 0 chr1 45731178 45731259 -236462405 - L2 LINE L2 -3 3310 3224 904 272 16 29 chr1 45731283 45731529 -236462135 + MIR SINE MIR 20 262 0 1571 183 0 7 chr1 45731605 45731914 -236461750 - AluJo SINE Alu 0 307 1 780 312 82 7 chr1 45732015 45732601 -236461063 - L2 LINE L2 -219 3053 2417 644 154 0 10 chr1 45732827 45732968 -236460696 - FLAM_C SINE Alu 0 143 25 277 262 158 49 chr1 45733242 45733406 -236460258 - L2 LINE L2 -111 3202 3021 823 201 111 24 chr1 45733407 45733695 -236459969 + MER69 DNA AcHobo 1501 1813 -713 705 157 0 9 chr1 45733699 45733807 -236459857 + AluJo SINE Alu 5 111 -201 32 0 0 0 chr1 45733813 45733845 -236459819 + AT_rich Low_complexity Low_complexity 1 32 0 353 156 13 52 chr1 45733893 45733970 -236459694 + AluJo SINE Alu 120 193 -109 340 226 12 12 chr1 45734072 45734156 -236459508 + MIR3 SINE MIR 114 197 -11 539 283 96 28 chr1 45734177 45734428 -236459236 + L2 LINE L2 3046 3313 0 817 194 0 7 chr1 45734796 45734951 -236458713 - FRAM SINE Alu -16 160 7 300 330 162 11 chr1 45735536 45735715 -236457949 - MLT1I LTR MaLR -123 286 81 687 304 81 39 chr1 45735764 45736123 -236457541 + LTR16A LTR ERVL 65 438 -12 1191 148 0 0 chr1 45736568 45736757 -236456907 + MLT1B LTR MaLR 1 189 -201 5189 117 27 19 chr1 45736757 45737622 -236456042 + L1PA16 LINE L1 5294 6165 -1 192 77 0 0 chr1 45737646 45737672 -236455992 + (GGA)n Simple_repeat Simple_repeat 2 27 0 813 178 8 128 chr1 45737674 45737932 -236455732 + MLT1B LTR MaLR 164 390 0 968 247 52 94 chr1 45738231 45738558 -236455106 + MLT1H LTR MaLR 185 495 -54 1920 130 10 7 chr1 45738558 45738881 -236454783 - AluSx SINE Alu 0 312 1 968 247 52 94 chr1 45738881 45738934 -236454730 + MLT1H LTR MaLR 495 549 0 299 262 74 60 chr1 45739055 45739204 -236454460 + L2 LINE L2 3121 3271 -1 490 339 31 39 chr1 45739215 45739652 -236454012 + L2 LINE L2 2580 3011 -261 1826 316 19 5 chr1 45739652 45740231 -236453433 + ERVL LTR ERVL 3818 4404 -1360 * 2058 263 50 51 chr1 45740223 45740304 -236453360 + ERVL LTR ERVL 4763 4843 -921 1968 220 73 27 chr1 45740304 45740786 -236452878 - MLT1D LTR MaLR -1 504 1 2058 263 50 51 chr1 45740786 45741202 -236452462 + ERVL LTR ERVL 4843 5261 -503 2291 97 0 0 chr1 45741202 45741500 -236452164 + AluSc SINE Alu 1 298 -11 2058 263 50 51 chr1 45741500 45741764 -236451900 + ERVL LTR ERVL 5261 5524 -240 760 238 137 38 chr1 45742028 45742589 -236451075 + LTR50 LTR ERVL 16 795 0 566 239 143 61 chr1 45742603 45742833 -236450831 + MLT1K LTR MaLR 340 588 0 1667 165 9 22 chr1 45745963 45746279 -236447385 + AluJb SINE Alu 1 312 0 3890 234 150 6 chr1 45746491 45747812 -236445852 + L2 LINE L2 1809 3313 0 894 115 0 34 chr1 45748794 45748942 -236444722 - FLAM_C SINE Alu 0 143 1 200 274 24 36 chr1 45748951 45749035 -236444629 - L2 LINE L2 -607 2707 2625 284 250 62 31 chr1 45749101 45749197 -236444467 - L2 LINE L2 -844 2470 2372 1702 165 3 41 chr1 45749375 45749690 -236443974 - AluJb SINE Alu -9 303 1 295 128 0 0 chr1 45749938 45749985 -236443679 + MER112 DNA MER1_type 1 47 -213 1790 91 8 4 chr1 45749985 45750228 -236443436 - AluSq SINE Alu -19 294 51 423 321 7 7 chr1 45751218 45751358 -236442306 - MIR3 SINE MIR -15 193 54 357 254 132 0 chr1 45751494 45751608 -236442056 + MIR SINE MIR 119 247 -15 1044 241 53 0 chr1 45751650 45751878 -236441786 - MIR SINE MIR -13 249 10 246 266 151 0 chr1 45751937 45752060 -236441604 - MIR3 SINE MIR -63 145 6 245 214 135 0 chr1 45752982 45753071 -236440593 - MER91C DNA MER1_type -7 133 33 327 270 102 22 chr1 45754308 45754445 -236439219 + L3 LINE CR1 1424 1571 -6 454 322 70 12 chr1 45754711 45754882 -236438782 - MIR SINE MIR -62 200 20 669 199 250 6 chr1 45754916 45755092 -236438572 + MER20 DNA MER1_type 1 219 0 425 240 0 32 chr1 45755572 45755699 -236437965 - MIR SINE MIR -65 143 44 253 318 0 0 chr1 45756157 45756223 -236437441 + L2 LINE L2 3186 3251 -21 515 309 13 0 chr1 45756354 45756503 -236437161 - MIR3 SINE MIR -17 191 41 569 286 29 11 chr1 45756920 45757095 -236436569 - MER5A DNA MER1_type -5 184 7 738 270 57 9 chr1 45761320 45761550 -236432114 + MIR SINE MIR 5 245 -17 337 263 164 13 chr1 45761585 45761737 -236431927 + L2 LINE L2 3132 3306 -7 259 279 29 37 chr1 45762598 45762734 -236430930 + L2 LINE L2 2025 2159 -1155 181 369 0 0 chr1 45762976 45763041 -236430623 + MIR SINE MIR 58 122 -140 243 125 0 0 chr1 45764241 45764281 -236429383 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 361 309 29 57 chr1 45766815 45766990 -236426674 - MIR3 SINE MIR -7 201 32 271 308 84 9 chr1 45767507 45767614 -236426050 + MIR SINE MIR 33 147 -61 2334 90 0 6 chr1 45768137 45768448 -236425216 - AluSc SINE Alu 0 309 1 1768 135 32 0 chr1 45768671 45768977 -236424687 - AluJb SINE Alu 0 312 1 2269 101 0 0 chr1 45769053 45769360 -236424304 + AluSq SINE Alu 1 307 -6 2390 84 0 0 chr1 45769360 45769670 -236423994 + AluY SINE Alu 1 310 -1 1097 298 122 22 chr1 45769751 45770526 -236423138 + L2 LINE L2 2258 3133 -180 1816 134 3 27 chr1 45770850 45771148 -236422516 + AluJb SINE Alu 6 296 -16 415 256 34 26 chr1 45771177 45771294 -236422370 - MIR SINE MIR -62 146 29 960 204 33 0 chr1 45772017 45772198 -236421466 - MER5A DNA MER1_type -2 187 1 307 330 85 0 chr1 45772408 45772526 -236421138 - MIR SINE MIR -24 238 111 693 133 0 0 chr1 45772535 45772640 -236421024 + L1MB7 LINE L1 6073 6177 -7 1369 319 139 32 chr1 45773300 45773513 -236420151 - L2 LINE L2 -337 2977 2788 2321 62 17 0 chr1 45773513 45773804 -236419860 - AluSx SINE Alu -16 296 1 1369 319 139 32 chr1 45773804 45775111 -236418553 - L2 LINE L2 -526 2788 1294 1194 165 62 9 chr1 45775467 45775691 -236417973 - AluJo SINE Alu -17 295 60 216 301 0 48 chr1 45776229 45776312 -236417352 + MIR3 SINE MIR 116 194 -14 284 227 45 11 chr1 45776540 45776628 -236417036 - MER91A DNA MER1_type -105 91 1 2469 51 0 0 chr1 45777446 45777742 -236415922 + AluY SINE Alu 1 296 -15 918 230 63 99 chr1 45778048 45778408 -236415256 - L2 LINE L2 -356 2958 2587 182 36 0 36 chr1 45778408 45778436 -236415228 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2152 131 0 0 chr1 45778436 45778741 -236414923 - 7SLRNA srpRNA srpRNA -12 308 4 1999 126 0 7 chr1 45778749 45779042 -236414622 - AluJb SINE Alu -10 302 12 918 230 63 99 chr1 45779042 45779115 -236414549 - L2 LINE L2 -733 2581 2531 621 258 45 7 chr1 45779120 45779275 -236414389 - MIR3 SINE MIR -27 181 21 241 309 97 48 chr1 45780142 45780307 -236413357 + MIR3 SINE MIR 4 176 -32 322 226 121 16 chr1 45780640 45780764 -236412900 + MIR3 SINE MIR 38 174 -34 357 252 15 0 chr1 45781391 45781503 -236412161 + MIR SINE MIR 83 148 -60 421 216 52 0 chr1 45781992 45782089 -236411575 + L2 LINE L2 3195 3296 -17 216 97 0 0 chr1 45782089 45782120 -236411544 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1899 228 111 23 chr1 45783061 45783582 -236410082 - MER115 DNA AcHobo 0 693 127 181 265 24 48 chr1 45783870 45783953 -236409711 + L3 LINE CR1 1372 1452 -125 416 270 97 0 chr1 45784944 45785101 -236408563 + MIR SINE MIR 21 192 -70 268 243 126 36 chr1 45785362 45785473 -236408191 + MIR3 SINE MIR 48 168 -40 635 293 75 54 chr1 45785916 45786509 -236407155 + L2 LINE L2 2621 3231 -41 333 0 0 0 chr1 45786633 45786670 -236406994 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2096 96 0 4 chr1 45786670 45786951 -236406713 - AluSx SINE Alu -32 280 1 929 233 54 21 chr1 45787032 45787272 -236406392 + MIR SINE MIR 14 261 -1 575 272 43 0 chr1 45787542 45787704 -236405960 + MIR SINE MIR 70 238 -24 1964 163 0 0 chr1 45788024 45788330 -236405334 + AluJo SINE Alu 1 306 -6 383 308 9 61 chr1 45788351 45788565 -236405099 - MIR SINE MIR -43 219 17 515 315 20 25 chr1 45789038 45789235 -236404429 + MIR SINE MIR 18 213 -49 192 224 20 0 chr1 45789396 45789445 -236404219 + L2 LINE L2 2921 2970 -343 194 277 0 0 chr1 45789568 45789615 -236404049 - L2 LINE L2 -9 3263 3217 335 264 24 91 chr1 45789645 45789853 -236403811 - L2 LINE L2 -136 3136 2943 1433 158 26 11 chr1 45790325 45790591 -236403073 + AluJo SINE Alu 43 312 0 530 329 7 7 chr1 45790632 45790781 -236402883 + MIR SINE MIR 2 150 -112 238 207 69 0 chr1 45791055 45791113 -236402551 + MIR SINE MIR 85 146 -62 213 240 0 51 chr1 45792333 45792411 -236401253 - MIR SINE MIR -63 145 102 272 326 33 0 chr1 45792967 45793059 -236400605 + MIR SINE MIR 117 211 -51 798 219 92 13 chr1 45793252 45793480 -236400184 - MIR SINE MIR 0 262 17 395 325 18 17 chr1 45794212 45794388 -236399276 + MIR3 SINE MIR 7 181 -27 397 263 45 38 chr1 45795005 45795138 -236398526 + MIR SINE MIR 108 241 -21 1486 175 74 11 chr1 45796194 45796479 -236397185 - AluJo SINE Alu -9 303 1 193 372 64 11 chr1 45796770 45796958 -236396706 - MIR SINE MIR 0 262 65 249 345 30 6 chr1 45797835 45798000 -236395664 + (CAGA)n Simple_repeat Simple_repeat 3 171 0 * 298 354 7 0 chr1 45797974 45798118 -236395546 + (CAGG)n Simple_repeat Simple_repeat 1 145 0 182 37 37 0 chr1 45798512 45798539 -236395125 + (CAGGG)n Simple_repeat Simple_repeat 4 31 0 26 88 0 0 chr1 45799320 45799388 -236394276 + GC_rich Low_complexity Low_complexity 1 68 0 2083 108 4 0 chr1 45799724 45800045 -236393619 - AluSq SINE Alu 0 324 3 27 29 0 0 chr1 45800047 45800081 -236393583 + AT_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr1 45800112 45800156 -236393508 + AT_rich Low_complexity Low_complexity 1 44 0 544 120 0 0 chr1 45800156 45800231 -236393433 - AluJ/FLAM SINE Alu -236 76 2 230 344 23 31 chr1 45800996 45801124 -236392540 - MIR SINE MIR -70 192 66 250 279 120 51 chr1 45801187 45801345 -236392319 + MIR SINE MIR 20 188 -74 447 174 0 0 chr1 45801636 45801722 -236391942 + (ATG)n Simple_repeat Simple_repeat 1 86 0 280 286 14 0 chr1 45801849 45801919 -236391745 + MER96 DNA MER1_type? 1 71 -104 2075 129 3 0 chr1 45802002 45802311 -236391353 + AluSx SINE Alu 3 312 0 1501 253 64 13 chr1 45802317 45802708 -236390956 + LTR16A LTR ERVL 40 450 0 464 270 27 0 chr1 45802810 45802921 -236390743 - MIR SINE MIR -21 241 128 244 194 0 16 chr1 45802968 45803030 -236390634 + HAL1b LINE L1 604 664 -684 210 143 24 0 chr1 45803757 45803799 -236389865 - MIR SINE MIR -111 151 109 2061 70 12 0 chr1 45804735 45804994 -236388670 - AluSc SINE Alu -16 293 32 23 0 0 0 chr1 45806118 45806141 -236387523 + GC_rich Low_complexity Low_complexity 1 23 0 36 87 0 0 chr1 45806317 45806409 -236387255 + GC_rich Low_complexity Low_complexity 1 92 0 25 51 0 0 chr1 45806524 45806563 -236387101 + GC_rich Low_complexity Low_complexity 1 39 0 321 298 0 0 chr1 45807542 45807626 -236386038 + L2 LINE L2 3189 3272 0 469 262 52 17 chr1 45807636 45807780 -236385884 + MIR SINE MIR 103 251 -11 2502 33 0 7 chr1 45807808 45808111 -236385553 - AluY SINE Alu -10 301 1 238 253 53 29 chr1 45808222 45808305 -236385359 - MIR SINE MIR -62 146 72 600 172 0 0 chr1 45808605 45808698 -236384966 - AluJ/FLAM SINE Alu -218 94 2 187 261 22 0 chr1 45808700 45808746 -236384918 + MIR SINE MIR 44 90 -118 221 290 0 103 chr1 45808746 45808853 -236384811 + MIR SINE MIR 65 160 -102 1390 187 16 0 chr1 45809076 45809327 -236384337 + AluJo SINE Alu 35 289 -23 1535 175 87 0 chr1 45809337 45809623 -236384041 + AluJb SINE Alu 1 311 -1 2269 104 3 0 chr1 45809743 45810052 -236383612 + AluSx SINE Alu 1 310 -2 2197 118 0 0 chr1 45810151 45810455 -236383209 + AluSx SINE Alu 1 304 -8 604 231 24 53 chr1 45810482 45810651 -236383013 + MER5A DNA MER1_type 1 164 -25 259 211 18 0 chr1 45810773 45810830 -236382834 - L2 LINE L2 -571 2743 2686 311 316 68 0 chr1 45810865 45810982 -236382682 + L2 LINE L2 2886 3010 -303 3410 101 112 0 chr1 45811038 45811602 -236382062 + Tigger3b DNA MER2_type 1 627 -604 1791 170 0 7 chr1 45811604 45811904 -236381760 + AluJo SINE Alu 1 298 -14 373 116 0 29 chr1 45811905 45811974 -236381690 + AluS SINE Alu 1 67 -235 4851 140 66 34 chr1 45812077 45813007 -236380657 - Tigger1 DNA MER2_type -1120 1298 340 1082 156 24 24 chr1 45813006 45813218 -236380446 - Tigger1 DNA MER2_type -2205 213 2 * 1517 185 3 14 chr1 45813265 45813552 -236380112 + AluJb SINE Alu 2 285 -27 29 28 0 0 chr1 45813553 45813589 -236380075 + AT_rich Low_complexity Low_complexity 1 36 0 389 330 98 19 chr1 45813590 45813900 -236379764 - L2 LINE L2 -214 3099 2767 1486 106 144 8 chr1 45814028 45814292 -236379372 - MSTA LTR MaLR 0 428 129 5430 140 24 6 chr1 45814417 45815478 -236378186 + L1PA16 LINE L1 5080 6157 -9 372 290 32 0 chr1 45815501 45815625 -236378039 + MLT1I LTR MaLR 269 396 -13 658 203 0 0 chr1 45815990 45816108 -236377556 + FLAM_C SINE Alu 1 118 -15 237 322 41 16 chr1 45816210 45816331 -236377333 - MIR SINE MIR -59 203 80 255 407 63 18 chr1 45816966 45817457 -236376207 + L2 LINE L2 2226 2738 -576 264 212 20 0 chr1 45817976 45818032 -236375632 - AluJ/monomer SINE Alu -251 50 1 909 296 81 15 chr1 45818114 45818523 -236375141 + MLT1J LTR MaLR 21 456 -55 502 330 104 24 chr1 45818703 45818832 -236374832 - L1ME4a LINE L1 -187 5934 5817 2318 96 0 0 chr1 45818832 45819134 -236374530 - AluSx SINE Alu -1 311 10 502 330 104 24 chr1 45819134 45819292 -236374372 - L1ME4a LINE L1 -304 5817 5624 186 43 0 0 chr1 45819496 45819519 -236374145 + (TC)n Simple_repeat Simple_repeat 1 23 0 696 291 39 0 chr1 45819545 45819727 -236373937 + MIR SINE MIR 12 200 -62 529 277 100 32 chr1 45819726 45819946 -236373718 - MIR SINE MIR 0 262 28 * 644 313 43 0 chr1 45820117 45820328 -236373336 - MIR SINE MIR -3 259 40 526 275 44 22 chr1 45820858 45821054 -236372610 - MIR SINE MIR -38 170 17 670 315 16 31 chr1 45821177 45821431 -236372233 + MIR SINE MIR 13 262 0 1692 184 3 0 chr1 45821433 45821742 -236371922 + AluJb SINE Alu 3 312 0 520 295 28 47 chr1 45822203 45822456 -236371208 + MIR SINE MIR 3 252 -10 1156 149 0 0 chr1 45822715 45822889 -236370775 - AluJb SINE Alu -8 304 131 261 139 0 0 chr1 45822919 45822962 -236370702 + (TG)n Simple_repeat Simple_repeat 2 44 0 670 111 0 0 chr1 45822983 45823073 -236370591 - AluJb SINE Alu -192 120 31 526 259 90 38 chr1 45823226 45823438 -236370226 + L2 LINE L2 3073 3295 -18 2169 92 0 0 chr1 45824456 45824737 -236368927 + AluSx SINE Alu 1 281 -31 1015 113 0 0 chr1 45824604 45824737 -236368927 + AluSg/x SINE Alu 147 313 0 307 0 0 0 chr1 45824737 45824771 -236368893 + (CAAA)n Simple_repeat Simple_repeat 1 76 0 270 248 37 55 chr1 45825025 45825134 -236368530 + MIR SINE MIR 106 212 -50 433 304 94 10 chr1 45825470 45825671 -236367993 - MIR SINE MIR -16 246 29 198 368 73 15 chr1 45825666 45825802 -236367862 - L3 LINE CR1 -39 1538 1395 * 2391 101 0 0 chr1 45825802 45826100 -236367564 - AluY SINE Alu -13 298 1 25 0 0 0 chr1 45826107 45826132 -236367532 + AT_rich Low_complexity Low_complexity 1 25 0 867 122 0 8 chr1 45826143 45826266 -236367398 - FLAM_C SINE Alu -16 127 6 376 274 157 10 chr1 45826568 45826772 -236366892 + L2 LINE L2 1190 1423 -1891 248 327 27 36 chr1 45827175 45827285 -236366379 + MER5A DNA MER1_type 25 133 -56 725 165 15 15 chr1 45827735 45827868 -236365796 - FLAM_C SINE Alu 0 133 1 198 262 33 33 chr1 45827868 45827929 -236365735 - MIR SINE MIR -61 147 87 1908 132 12 73 chr1 45829200 45829631 -236364033 - AluSx SINE Alu 0 411 1 2312 102 26 0 chr1 45829653 45829958 -236363706 - AluSq SINE Alu 0 313 1 866 150 0 0 chr1 45829980 45830107 -236363557 - FLAM_C SINE Alu -16 127 1 23 68 0 0 chr1 45830902 45830946 -236362718 + AT_rich Low_complexity Low_complexity 1 44 0 2608 58 0 3 chr1 45831024 45831335 -236362329 - AluY SINE Alu -1 310 1 3133 137 88 2 chr1 45831366 45831876 -236361788 - MER41C LTR ERV1 0 554 1 745 239 8 106 chr1 45832201 45832258 -236361406 + MIR SINE MIR 33 94 -168 2258 120 0 16 chr1 45832258 45832574 -236361090 - AluSx SINE Alu -1 311 1 745 239 8 106 chr1 45832574 45832585 -236361079 + MIR SINE MIR 94 104 -158 2385 93 3 0 chr1 45832585 45832886 -236360778 - AluSg SINE Alu -8 302 1 745 239 8 106 chr1 45832886 45833071 -236360593 + MIR SINE MIR 104 262 0 239 333 43 0 chr1 45833086 45833179 -236360485 - MIR SINE MIR 0 262 166 1647 171 49 7 chr1 45833351 45833638 -236360026 + AluJo SINE Alu 1 299 -13 2267 98 3 0 chr1 45833639 45833926 -236359738 + AluSp SINE Alu 1 288 -25 3347 164 75 86 chr1 45834331 45834987 -236358677 - MER21A LTR ERV1 -9 922 260 2207 120 7 3 chr1 45834987 45835296 -236358368 - AluSx SINE Alu -2 310 1 1815 157 13 23 chr1 45835299 45835598 -236358066 - AluJb SINE Alu -16 296 1 3347 164 75 86 chr1 45835598 45835869 -236357795 - MER21A LTR ERV1 -673 258 1 480 204 10 0 chr1 45836161 45836259 -236357405 + L1MD3 LINE L1 7173 7271 -724 596 205 8 0 chr1 45836264 45836381 -236357283 + MLT1F1 LTR MaLR 3 120 -447 1882 173 32 80 chr1 45836384 45836632 -236357032 + L1MD3 LINE L1 7408 7666 -329 2168 130 3 0 chr1 45836632 45836974 -236356690 + AluSx SINE Alu 1 312 0 1290 228 43 33 chr1 45836983 45837286 -236356378 + AluJo SINE Alu 1 306 -6 1882 173 32 80 chr1 45837286 45837489 -236356175 + L1MD3 LINE L1 7674 7847 -148 933 195 13 0 chr1 45837489 45837643 -236356021 - FRAM SINE Alu -21 155 1 641 152 68 0 chr1 45837645 45837777 -236355887 + L1MD3 LINE L1 7839 7979 -16 1803 169 24 0 chr1 45837799 45837918 -236355746 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr1 45837918 45837946 -236355718 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1803 169 24 0 chr1 45837946 45838122 -236355542 + AluJo SINE Alu 116 303 -9 1900 162 0 30 chr1 45838337 45838639 -236355025 - AluJb SINE Alu -18 294 2 250 153 28 69 chr1 45838824 45838896 -236354768 + MIR SINE MIR 183 251 -11 2242 95 0 3 chr1 45838896 45839204 -236354460 - AluSx SINE Alu 0 308 2 207 317 37 0 chr1 45839241 45839323 -236354341 - MIR SINE MIR -12 250 166 818 228 217 16 chr1 45840202 45840575 -236353089 + LTR50 LTR ERVL 2 449 -346 297 206 40 150 chr1 45840590 45840843 -236352821 + LTR50 LTR ERVL 571 795 0 1175 172 63 120 chr1 45841281 45841570 -236352094 - L1MD3 LINE L1 0 8028 7724 788 150 0 16 chr1 45841570 45841697 -236351967 + FLAM_C SINE Alu 1 125 -8 2353 86 3 0 chr1 45841704 45841994 -236351670 + AluSq SINE Alu 1 291 -22 1175 172 63 120 chr1 45841994 45842148 -236351516 - L1MD3 LINE L1 -310 7718 7630 388 284 57 21 chr1 45842415 45842556 -236351108 + MIR SINE MIR 1 146 -116 358 319 9 9 chr1 45842566 45842679 -236350985 + MIR SINE MIR 32 144 -118 1949 153 10 0 chr1 45842759 45843054 -236350610 - AluJb SINE Alu -14 298 1 306 241 149 0 chr1 45843088 45843175 -236350489 + MIR SINE MIR 93 192 -70 320 288 107 63 chr1 45843847 45844052 -236349612 - MIR SINE MIR -27 235 22 268 247 14 41 chr1 45844405 45844478 -236349186 - MIR3 SINE MIR -52 156 86 222 118 0 0 chr1 45844924 45844958 -236348706 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 211 227 102 109 chr1 45845164 45845292 -236348372 + MIR3 SINE MIR 82 208 0 992 111 0 7 chr1 45845554 45845689 -236347975 + AluJo SINE Alu 1 134 -178 2107 110 53 7 chr1 45845705 45846004 -236347660 + AluSq SINE Alu 1 313 0 230 257 62 44 chr1 45846546 45846659 -236347005 + LTR67 LTR ERVL 443 557 0 365 278 90 15 chr1 45846862 45846995 -236346669 + MIR SINE MIR 119 261 -1 522 308 66 0 chr1 45847099 45847281 -236346383 + L3 LINE CR1 875 1068 -509 270 180 0 0 chr1 45847448 45847498 -236346166 + L1M4 LINE L1 4747 4796 -1350 * 389 176 47 0 chr1 45847494 45847579 -236346085 + L1M4 LINE L1 5153 5241 -905 1757 159 43 60 chr1 45847579 45847949 -236345715 + THE1B LTR MaLR 1 364 0 10132 124 28 34 chr1 45847951 45849535 -236344129 + THE1B-int LTR MaLR 3 1576 -4 1385 180 52 51 chr1 45849539 45849882 -236343782 + THE1B LTR MaLR 1 360 -68 2268 119 0 3 chr1 45849882 45850193 -236343471 - AluSg SINE Alu 0 310 1 1385 180 52 51 chr1 45850193 45850263 -236343401 + THE1B LTR MaLR 360 428 0 448 223 50 0 chr1 45850263 45850384 -236343280 + L1M4 LINE L1 5237 5363 -783 882 210 13 0 chr1 45850393 45850550 -236343114 + AluJo SINE Alu 140 298 -14 197 342 8 83 chr1 45850556 45850676 -236342988 - L2 LINE L2 -74 3198 3088 558 277 51 36 chr1 45850755 45850950 -236342714 - MIR SINE MIR -44 218 21 860 127 0 0 chr1 45851067 45851185 -236342479 - FLAM_C SINE Alu -25 118 1 26 50 0 0 chr1 45851192 45851232 -236342432 + AT_rich Low_complexity Low_complexity 1 40 0 188 352 113 28 chr1 45851271 45851413 -236342251 + L2 LINE L2 3032 3185 -87 2258 117 13 0 chr1 45851489 45851662 -236342002 - AluSx SINE Alu -8 304 124 423 0 0 0 chr1 45851662 45851709 -236341955 + (TG)n Simple_repeat Simple_repeat 2 48 0 2258 117 13 0 chr1 45851709 45851835 -236341829 - AluSx SINE Alu -188 124 1 422 333 43 16 chr1 45851848 45852034 -236341630 - MIR SINE MIR -1 261 71 1879 163 0 3 chr1 45852603 45852886 -236340778 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr1 45852890 45852912 -236340752 + (TA)n Simple_repeat Simple_repeat 2 23 0 891 152 0 26 chr1 45852921 45853072 -236340592 + MER5A DNA MER1_type 43 189 0 2377 87 3 3 chr1 45853157 45853456 -236340208 - AluSx SINE Alu -13 299 1 190 265 20 0 chr1 45853742 45853791 -236339873 - MIR SINE MIR -52 210 161 373 198 12 25 chr1 45853909 45853990 -236339674 + MIR SINE MIR 48 127 -135 2061 252 95 64 chr1 45854015 45854277 -236339387 - L2 LINE L2 -7 3306 3053 1928 150 0 10 chr1 45854277 45854577 -236339087 - AluJo SINE Alu -15 297 1 2061 252 95 64 chr1 45854577 45855398 -236338266 - L2 LINE L2 -260 3053 2196 363 231 213 0 chr1 45855374 45855482 -236338182 + MIR SINE MIR 130 260 -2 * 255 285 42 104 chr1 45855515 45855824 -236337840 + L2 LINE L2 2640 2929 -385 193 324 78 0 chr1 45855908 45856010 -236337654 + L2 LINE L2 3132 3241 -31 244 244 81 60 chr1 45856052 45856190 -236337474 - MIR SINE MIR -87 121 25 258 81 0 0 chr1 45856230 45856267 -236337397 + (CA)n Simple_repeat Simple_repeat 2 38 0 786 134 8 0 chr1 45856402 45856521 -236337143 - FLAM_C SINE Alu -22 121 2 225 196 0 0 chr1 45856526 45856582 -236337082 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 228 286 55 11 chr1 45856724 45856815 -236336849 - L2 LINE L2 -260 3012 2918 1888 70 4 0 chr1 45857188 45857418 -236336246 - AluY SINE Alu 0 311 81 1783 137 12 73 chr1 45857436 45857613 -236336051 - AluJo SINE Alu -2 310 161 2341 89 0 10 chr1 45857613 45857917 -236335747 - AluSq SINE Alu -12 301 1 1783 137 12 73 chr1 45857917 45858068 -236335596 - AluJo SINE Alu -151 161 2 270 206 0 0 chr1 45858965 45859028 -236334636 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 180 205 0 0 chr1 45859063 45859102 -236334562 + MIR SINE MIR 123 161 -101 2279 93 0 3 chr1 45859102 45859393 -236334271 + AluSg SINE Alu 1 290 -20 27 0 0 0 chr1 45859408 45859435 -236334229 + AT_rich Low_complexity Low_complexity 1 27 0 285 305 109 8 chr1 45859493 45859621 -236334043 - MIR SINE MIR -31 231 91 23 68 0 0 chr1 45859703 45859747 -236333917 + AT_rich Low_complexity Low_complexity 1 44 0 1072 175 0 26 chr1 45859773 45859962 -236333702 + AluJb SINE Alu 125 308 -4 22 0 0 0 chr1 45859985 45860007 -236333657 + AT_rich Low_complexity Low_complexity 1 22 0 954 240 40 24 chr1 45860008 45860258 -236333406 - MIR SINE MIR 0 262 9 2497 67 0 3 chr1 45860280 45860577 -236333087 + AluY SINE Alu 1 296 -15 198 200 25 0 chr1 45860766 45860806 -236332858 + MIR SINE MIR 105 145 -63 2020 175 7 0 chr1 45860934 45861271 -236332393 - AluJb SINE Alu 0 339 1 523 198 66 0 chr1 45861317 45861423 -236332241 + MER81 DNA DNA 1 113 -1 221 288 63 45 chr1 45861727 45861838 -236331826 + MIR3 SINE MIR 58 170 -38 272 237 92 0 chr1 45862031 45862107 -236331557 + MIR SINE MIR 110 192 -70 741 170 0 15 chr1 45862342 45862477 -236331187 + FLAM_C SINE Alu 1 133 0 193 143 163 0 chr1 45863210 45863259 -236330405 + MIR3 SINE MIR 125 181 -27 1334 178 30 26 chr1 45863331 45863407 -236330257 + MER33 DNA MER1_type 6 80 -2505 1972 104 54 4 chr1 45863407 45863687 -236329977 + AluSq SINE Alu 1 294 -19 1334 178 30 26 chr1 45863687 45863914 -236329750 + MER33 DNA MER1_type 80 310 -14 712 139 0 22 chr1 45863917 45864054 -236329610 + (TTCC)n Simple_repeat Simple_repeat 2 135 0 1556 172 43 60 chr1 45864070 45864372 -236329292 - AluSg SINE Alu -13 297 1 1644 181 0 52 chr1 45864644 45864969 -236328695 + AluJo SINE Alu 1 308 -4 221 253 121 48 chr1 45865411 45865494 -236328170 + MIR SINE MIR 9 97 -165 409 368 24 24 chr1 45865497 45865706 -236327958 - L3 LINE CR1 -178 1399 1191 894 211 31 49 chr1 45865780 45866003 -236327661 + MIR SINE MIR 12 230 -32 243 226 32 0 chr1 45866068 45866130 -236327534 + MLT1K LTR MaLR 201 264 -324 491 211 149 57 chr1 45866368 45866562 -236327102 - MLT1H LTR MaLR -15 534 323 180 263 0 0 chr1 45866573 45866611 -236327053 - L2 LINE L2 -16 3256 3219 615 282 56 44 chr1 45866630 45866882 -236326782 - MIR SINE MIR -6 256 2 255 31 0 0 chr1 45866938 45866970 -236326694 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 212 372 58 0 chr1 45867050 45867136 -236326528 - L2 LINE L2 -3 3269 3179 189 0 0 0 chr1 45867139 45867160 -236326504 + (CAG)n Simple_repeat Simple_repeat 3 23 0 871 172 0 0 chr1 45867352 45867486 -236326178 + FLAM_C SINE Alu 1 134 -9 661 198 189 31 chr1 45867539 45867761 -236325903 - LTR16A1 LTR ERVL -197 260 4 569 193 0 37 chr1 45867859 45867968 -236325696 + FLAM_C SINE Alu 39 143 0 282 56 0 0 chr1 45867980 45868016 -236325648 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 615 106 48 39 chr1 45868016 45868120 -236325544 + AluJo SINE Alu 120 224 -88 1088 148 0 40 chr1 45868245 45868421 -236325243 - AluSx SINE Alu -138 174 6 252 0 0 0 chr1 45868740 45868768 -236324896 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 382 323 45 8 chr1 45868911 45869044 -236324620 + MIR3 SINE MIR 10 147 -61 272 258 91 54 chr1 45869660 45869846 -236323818 - MLT1L LTR MaLR -37 578 386 532 233 0 9 chr1 45869858 45869974 -236323690 + MIR SINE MIR 148 262 0 1421 172 0 4 chr1 45870110 45870348 -236323316 - L1MB5 LINE L1 -7 6167 5931 981 213 0 6 chr1 45870484 45870667 -236322997 - AluJb SINE Alu -13 299 118 358 253 141 10 chr1 45870667 45870766 -236322898 + L2 LINE L2 3166 3277 -36 1774 193 0 0 chr1 45870806 45871102 -236322562 - AluJb SINE Alu -16 296 1 588 210 137 0 chr1 45871212 45871336 -236322328 + FRAM SINE Alu 6 146 -30 216 0 0 0 chr1 45871337 45871361 -236322303 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3158 168 35 1 chr1 45871457 45871469 -236322195 - MLT1F1 LTR MaLR 0 557 547 1701 172 26 40 chr1 45871469 45871556 -236322108 - MER2 DNA MER2_type 0 344 257 1758 157 64 7 chr1 45871556 45871836 -236321828 + AluJb SINE Alu 1 296 -16 1701 172 26 40 chr1 45871836 45872096 -236321568 - MER2 DNA MER2_type -87 257 2 3158 168 35 1 chr1 45872096 45872634 -236321030 - MLT1F1 LTR MaLR -10 547 1 1231 64 0 0 chr1 45872819 45872960 -236320704 - AluSg SINE Alu -169 141 1 1455 71 16 0 chr1 45873168 45873391 -236320273 - AluY SINE Alu 0 322 97 1788 128 7 25 chr1 45873402 45873683 -236319981 + AluJo SINE Alu 23 298 -14 273 291 63 0 chr1 45874256 45874335 -236319329 + L2 LINE L2 3229 3312 -1 1937 137 3 17 chr1 45874364 45874656 -236319008 - AluJo SINE Alu -22 290 3 307 344 38 19 chr1 45875262 45875453 -236318211 - MIR SINE MIR -41 221 20 2406 57 4 0 chr1 45876074 45876387 -236317277 + AluSc SINE Alu 1 314 0 258 314 12 23 chr1 45877667 45877753 -236315911 + Charlie7 DNA MER1_type 126 210 -2402 341 265 20 0 chr1 45878500 45878598 -236315066 - MIR SINE MIR -1 261 162 216 326 38 53 chr1 45878652 45878916 -236314748 + L2 LINE L2 2718 2977 -337 1510 160 6 97 chr1 45879699 45879835 -236313829 + AluJo SINE Alu 1 148 -164 1868 119 80 7 chr1 45879835 45880121 -236313543 - AluSx SINE Alu -5 307 1 2353 66 0 7 chr1 45880127 45880444 -236313220 - AluY SINE Alu 0 315 1 1510 160 6 97 chr1 45880444 45880629 -236313035 + AluJo SINE Alu 153 301 -11 259 329 55 14 chr1 45881492 45881638 -236312026 + MIR3 SINE MIR 31 182 -26 226 133 0 0 chr1 45882230 45882260 -236311404 + AluJo SINE Alu 5 34 -266 1763 105 0 115 chr1 45882261 45882584 -236311080 + AluJo SINE Alu 21 306 -6 265 291 105 27 chr1 45883152 45883371 -236310293 - MIR SINE MIR 0 262 24 666 184 0 102 chr1 45886766 45886913 -236306751 + MER2 DNA MER2_type 1 132 -213 802 216 31 0 chr1 45886913 45887075 -236306589 - FAM SINE Alu -18 167 1 1063 139 75 0 chr1 45887076 45887263 -236306401 + MER2 DNA MER2_type 120 320 -25 1622 121 3 136 chr1 45887373 45887719 -236305945 - AluJb SINE Alu 0 302 3 1975 125 50 0 chr1 45887748 45888027 -236305637 - AluSx SINE Alu -15 297 5 2147 137 0 0 chr1 45888056 45888355 -236305309 - AluSx SINE Alu -13 299 1 201 132 53 0 chr1 45888882 45888920 -236304744 - L2 LINE L2 -19 3253 3214 * 226 291 199 14 chr1 45888887 45889028 -236304636 - MIR SINE MIR -19 243 77 1979 160 3 0 chr1 45889197 45889497 -236304167 + AluJb SINE Alu 1 301 -11 452 276 152 5 chr1 45890006 45890223 -236303441 + MIR SINE MIR 2 250 -12 2185 87 24 0 chr1 45890872 45891161 -236302503 + AluY SINE Alu 1 296 -15 453 237 107 29 chr1 45891255 45891449 -236302215 + MIR SINE MIR 39 251 -11 281 296 41 59 chr1 45891632 45891745 -236301919 - Charlie8 DNA MER1_type -2156 261 150 1867 145 41 10 chr1 45891745 45892035 -236301629 - AluJb SINE Alu -13 299 1 281 296 41 59 chr1 45892035 45892090 -236301574 - Charlie8 DNA MER1_type -2267 150 96 2294 94 0 0 chr1 45892126 45892414 -236301250 + AluSx SINE Alu 1 288 -24 377 230 25 113 chr1 45892464 45892601 -236301063 + MARNA DNA Mariner 278 393 -193 2214 110 0 7 chr1 45892601 45892901 -236300763 + AluSc SINE Alu 1 298 -11 377 230 25 113 chr1 45892901 45892967 -236300697 + MARNA DNA Mariner 393 463 -123 212 281 146 0 chr1 45893153 45893249 -236300415 + L3 LINE CR1 1390 1499 -78 247 330 18 9 chr1 45893287 45893396 -236300268 + MIR SINE MIR 20 129 -133 238 281 149 41 chr1 45893436 45893557 -236300107 - L2 LINE L2 -1 3271 3138 1934 91 50 64 chr1 45893842 45894140 -236299524 + AluSx SINE Alu 1 294 -18 30 45 0 0 chr1 45894493 45894537 -236299127 + AT_rich Low_complexity Low_complexity 1 44 0 1670 193 0 31 chr1 45894597 45894919 -236298745 + AluJo SINE Alu 1 312 0 413 246 33 25 chr1 45895259 45895381 -236298283 - MER103 DNA DNA -3 163 41 2284 90 7 13 chr1 45896050 45896360 -236297304 - AluSg SINE Alu -2 308 1 1722 118 0 4 chr1 45896556 45896793 -236296871 + AluSx SINE Alu 42 277 -35 2194 121 3 0 chr1 45896864 45897162 -236296502 - AluSx SINE Alu -13 299 1 362 217 212 33 chr1 45898030 45898214 -236295450 - MIR SINE MIR -12 250 34 232 345 18 18 chr1 45898662 45898772 -236294892 + MIR SINE MIR 16 125 -83 2221 104 0 7 chr1 45898920 45899218 -236294446 + AluSg SINE Alu 1 296 -14 479 202 163 39 chr1 45899235 45899413 -236294251 + MIR SINE MIR 52 251 -11 2165 101 0 4 chr1 45899522 45899799 -236293865 + AluSx SINE Alu 1 276 -36 194 31 0 62 chr1 45899803 45899835 -236293829 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1810 147 49 0 chr1 45899986 45900272 -236293392 - AluSx SINE Alu -12 300 1 590 264 45 0 chr1 45901499 45901654 -236292010 + MIR SINE MIR 12 173 -89 435 232 0 10 chr1 45904201 45904300 -236289364 - MIR SINE MIR -102 160 63 199 283 104 9 chr1 45904663 45904769 -236288895 + MIR SINE MIR 97 212 -50 407 174 0 0 chr1 45904807 45904876 -236288788 + AluJ/FRAM SINE Alu 227 295 -17 939 199 70 73 chr1 45905621 45905663 -236288001 + MLT1I LTR MaLR 109 150 -259 2298 100 0 0 chr1 45905663 45905962 -236287702 + AluSg SINE Alu 1 299 -11 939 199 70 73 chr1 45905962 45906221 -236287443 + MLT1I LTR MaLR 150 409 0 2426 89 0 0 chr1 45906980 45907273 -236286391 + AluSg SINE Alu 1 293 -17 223 274 32 0 chr1 45907354 45907416 -236286248 - L2 LINE L2 -214 3058 2995 2324 101 0 0 chr1 45907617 45907923 -236285741 - AluSq SINE Alu -7 306 1 735 180 118 0 chr1 45907927 45908088 -236285576 - L1MB3 LINE L1 -44 6139 5960 * 1244 117 5 48 chr1 45908081 45908287 -236285377 - L1MB3 LINE L1 -445 5738 5542 2343 78 0 16 chr1 45908566 45908872 -236284792 - AluY SINE Alu -10 301 1 2256 103 0 17 chr1 45909081 45909381 -236284283 - AluSq SINE Alu -18 295 1 1101 275 29 52 chr1 45909457 45909842 -236283822 + LTR16B LTR ERVL 5 380 -84 285 105 63 0 chr1 45909861 45909956 -236283708 + (TA)n Simple_repeat Simple_repeat 2 102 0 279 232 29 0 chr1 45909968 45910037 -236283627 + LTR16B LTR ERVL 392 462 -2 685 269 121 24 chr1 45910753 45911002 -236282662 + MLT1K LTR MaLR 193 465 -123 967 206 80 30 chr1 45911436 45911602 -236282062 + MER3 DNA MER1_type 1 180 -29 1652 187 45 45 chr1 45911602 45911998 -236281666 - MSTD LTR MaLR 0 396 1 967 206 80 30 chr1 45911998 45912030 -236281634 + MER3 DNA MER1_type 180 209 0 2129 106 50 0 chr1 45912218 45912501 -236281163 + AluSg SINE Alu 1 297 -13 186 323 104 10 chr1 45912896 45912992 -236280672 + L2 LINE L2 3191 3295 -18 216 0 0 0 chr1 45913014 45913038 -236280626 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2081 145 0 0 chr1 45913109 45913413 -236280251 + AluSq SINE Alu 1 304 -9 425 255 36 99 chr1 45913606 45913798 -236279866 - MIR SINE MIR -61 201 22 223 279 153 58 chr1 45914139 45914329 -236279335 - L2 LINE L2 -1655 1659 1452 413 219 75 113 chr1 45914392 45914612 -236279052 - MER112 DNA MER1_type 0 256 46 2190 137 0 0 chr1 45914612 45914912 -236278752 + AluSx SINE Alu 2 301 -11 413 219 75 113 chr1 45914912 45914956 -236278708 - MER112 DNA MER1_type -210 46 2 817 129 0 15 chr1 45915042 45915229 -236278435 - FLAM_C SINE Alu 0 186 2 340 252 27 18 chr1 45915488 45915599 -236278065 - MLT1K LTR MaLR -317 271 160 387 241 126 72 chr1 45915805 45916012 -236277652 + LTR33A LTR ERVL 1 218 -305 358 294 93 5 chr1 45916200 45916404 -236277260 + LTR33A LTR ERVL 302 523 0 2272 120 0 0 chr1 45916816 45917117 -236276547 - AluSx SINE Alu -11 301 1 2511 73 0 0 chr1 45917524 45917826 -236275838 - AluY SINE Alu -9 302 1 235 246 0 0 chr1 45917850 45917907 -236275757 + MIR SINE MIR 54 110 -98 2265 99 3 20 chr1 45917939 45918241 -236275423 + AluSx SINE Alu 1 297 -15 217 198 302 12 chr1 45918954 45919040 -236274624 - MIR3 SINE MIR -24 184 74 1845 166 7 14 chr1 45919306 45919464 -236274200 - AluJb SINE Alu -19 293 136 2418 99 0 0 chr1 45919464 45919767 -236273897 - AluSq SINE Alu -10 303 1 1845 166 7 14 chr1 45919767 45919903 -236273761 - AluJb SINE Alu -176 136 1 1518 189 6 47 chr1 45919945 45920262 -236273402 - AluJb SINE Alu -6 306 3 1622 160 63 104 chr1 45920334 45920747 -236272917 - MSTD LTR MaLR 0 396 1 348 240 263 22 chr1 45921284 45921463 -236272201 - MIR SINE MIR -32 230 9 250 184 66 13 chr1 45921713 45921789 -236271875 + MER96 DNA MER1_type? 96 175 0 198 361 0 14 chr1 45921966 45922038 -236271626 + L2 LINE L2 2994 3064 -208 1924 135 3 43 chr1 45922054 45922358 -236271306 - AluSx SINE Alu -20 292 1 864 214 19 0 chr1 45922358 45922517 -236271147 - FRAM SINE Alu -9 167 6 216 286 91 0 chr1 45922532 45922609 -236271055 + L2 LINE L2 3187 3270 -2 192 228 0 168 chr1 45922695 45922745 -236270919 - MIR3 SINE MIR -6 202 176 2629 53 0 0 chr1 45922745 45923048 -236270616 + AluY SINE Alu 1 303 -8 192 228 0 168 chr1 45923048 45923098 -236270566 - MIR3 SINE MIR -32 176 119 2939 98 9 30 chr1 45923117 45923185 -236270479 - MSTA LTR MaLR 0 428 360 2178 113 23 19 chr1 45923185 45923494 -236270170 + AluSx SINE Alu 1 310 -2 2939 98 9 30 chr1 45923494 45923862 -236269802 - MSTA LTR MaLR -68 360 1 305 306 157 28 chr1 45923876 45924336 -236269328 + L2 LINE L2 2239 2757 -557 22 0 0 0 chr1 45924337 45924359 -236269305 + AT_rich Low_complexity Low_complexity 1 22 0 1903 116 52 0 chr1 45924365 45924633 -236269031 + AluSg SINE Alu 1 282 -28 315 0 0 0 chr1 45924633 45924668 -236268996 + (TA)n Simple_repeat Simple_repeat 2 36 0 407 226 165 0 chr1 45924669 45924802 -236268862 - MIR SINE MIR 0 262 108 254 349 123 10 chr1 45925080 45925372 -236268292 - L2 LINE L2 -562 2752 2428 504 258 48 36 chr1 45925927 45926094 -236267570 + MIR SINE MIR 94 262 0 1566 171 47 24 chr1 45926798 45926971 -236266693 - AluJb SINE Alu -7 305 121 2375 83 0 0 chr1 45926971 45927272 -236266392 - AluSc SINE Alu -8 301 1 1566 171 47 24 chr1 45927272 45927396 -236266268 - AluJb SINE Alu -191 121 1 295 344 62 5 chr1 45927401 45927625 -236266039 - L1M4 LINE L1 -1273 4873 4637 192 271 43 43 chr1 45928016 45928086 -236265578 + MIR SINE MIR 58 127 -81 1958 134 14 0 chr1 45928206 45928497 -236265167 - AluSx SINE Alu -17 295 1 1206 168 33 9 chr1 45928775 45928989 -236264675 - MER20 DNA MER1_type 0 219 1 266 224 82 41 chr1 45929102 45929200 -236264464 + MIR3 SINE MIR 91 192 -16 180 0 0 0 chr1 45929212 45929232 -236264432 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 45929501 45929529 -236264135 + GC_rich Low_complexity Low_complexity 1 28 0 416 292 124 17 chr1 45931196 45931374 -236262290 + MIR SINE MIR 47 243 -19 203 245 19 0 chr1 45931344 45931397 -236262267 + L2 LINE L2 3217 3270 -2 * 335 323 29 55 chr1 45932288 45932551 -236261113 + MIR SINE MIR 9 256 -6 355 286 99 61 chr1 45932732 45933026 -236260638 - L2 LINE L2 -91 3181 2877 239 300 56 0 chr1 45933058 45933148 -236260516 - L2 LINE L2 -511 2803 2709 377 277 28 21 chr1 45933397 45933538 -236260126 + MIR SINE MIR 13 154 -108 789 167 45 0 chr1 45933698 45933830 -236259834 + MER45A DNA AcHobo 34 171 -7 831 209 143 0 chr1 45933940 45934150 -236259514 - MIR SINE MIR 0 262 23 2043 117 0 47 chr1 45934550 45934867 -236258797 + AluJb SINE Alu 1 302 -10 981 320 128 28 chr1 45934905 45935725 -236257939 + L2 LINE L2 2309 3271 -1 626 265 106 59 chr1 45935737 45936311 -236257353 + L2 LINE L2 2609 3219 -53 299 291 110 71 chr1 45936319 45936700 -236256964 - MLT1K LTR MaLR 0 588 193 341 179 179 0 chr1 45937191 45937297 -236256367 - MIR SINE MIR -2 260 136 834 179 86 0 chr1 45937321 45937472 -236256192 - AluJb SINE Alu -15 297 134 1853 163 0 3 chr1 45937472 45937779 -236255885 - AluJb SINE Alu -6 306 1 271 257 40 0 chr1 45938054 45938128 -236255536 + MIR SINE MIR 77 153 -109 980 223 36 109 chr1 45938341 45938438 -236255226 - MER113 DNA MER1_type? -80 441 338 2357 76 3 0 chr1 45938438 45938741 -236254923 - AluSp SINE Alu -9 304 1 980 223 36 109 chr1 45938741 45938995 -236254669 - MER113 DNA MER1_type? -183 338 67 882 213 0 0 chr1 45938995 45939155 -236254509 - FRAM SINE Alu -6 160 1 980 223 36 109 chr1 45939155 45939207 -236254457 - MER113 DNA MER1_type? -454 67 70 2041 115 13 26 chr1 45939207 45939520 -236254144 - AluSx SINE Alu -3 309 1 980 223 36 109 chr1 45939520 45939563 -236254101 - MER113 DNA MER1_type? -450 71 26 189 200 0 0 chr1 45939621 45939656 -236254008 + MIR3 SINE MIR 149 183 -25 225 282 19 10 chr1 45940316 45940419 -236253245 + (TG)n Simple_repeat Simple_repeat 2 105 0 285 257 13 26 chr1 45940477 45940629 -236253035 + (TG)n Simple_repeat Simple_repeat 1 150 0 316 103 15 15 chr1 45941062 45941130 -236252534 + (GGGGA)n Simple_repeat Simple_repeat 1 68 0 538 256 16 0 chr1 45941344 45941473 -236252191 - MER94 DNA DNA 0 134 4 459 226 263 0 chr1 45942844 45942981 -236250683 + MER5A DNA MER1_type 17 189 0 351 229 164 25 chr1 45943393 45943515 -236250149 - L1ME4a LINE L1 0 6121 5983 507 295 58 73 chr1 45943523 45943687 -236249977 - L2 LINE L2 0 3272 3107 2581 179 26 4 chr1 45943687 45944144 -236249520 - MLT1C LTR MaLR 0 467 1 507 295 58 73 chr1 45944144 45944349 -236249315 - L2 LINE L2 -165 3107 2920 1902 141 10 13 chr1 45944349 45944662 -236249002 - AluJb SINE Alu 0 312 1 507 295 58 73 chr1 45944662 45944873 -236248791 - L2 LINE L2 -352 2920 2707 246 105 0 0 chr1 45946023 45946061 -236247603 + (TG)n Simple_repeat Simple_repeat 1 38 0 470 276 53 24 chr1 45946690 45946860 -236246804 - MIR SINE MIR -86 176 2 223 287 43 64 chr1 45946921 45947015 -236246649 - MIR SINE MIR -112 150 59 260 229 33 0 chr1 45947241 45947302 -236246362 - MIR SINE MIR -121 141 79 363 331 16 16 chr1 45947637 45947764 -236245900 + MIR3 SINE MIR 33 159 -49 446 286 102 0 chr1 45947766 45947913 -236245751 + MER117 DNA MER1_type 2 163 -34 2378 78 0 0 chr1 45948064 45948360 -236245304 + AluSg SINE Alu 1 296 -14 331 257 14 91 chr1 45949061 45949185 -236244479 - MIR3 SINE MIR -3 205 87 451 309 46 0 chr1 45949793 45949945 -236243719 + MIR SINE MIR 34 192 -70 404 294 86 45 chr1 45950635 45950856 -236242808 + L2 LINE L2 3077 3306 -7 432 225 49 18 chr1 45950944 45951088 -236242576 - MLT1L LTR MaLR -4 611 328 180 152 0 0 chr1 45951142 45951175 -236242489 + GA-rich Low_complexity Low_complexity 1 33 0 283 297 209 0 chr1 45951235 45951383 -236242281 - MLT1L LTR MaLR -431 184 6 597 232 166 82 chr1 45951383 45951464 -236242200 + L1ME4a LINE L1 5612 5685 -436 2112 126 0 7 chr1 45951464 45951774 -236241890 + AluSx SINE Alu 1 308 -4 597 232 166 82 chr1 45951774 45951810 -236241854 + L1ME4a LINE L1 5685 5717 -404 1966 125 26 10 chr1 45951810 45952138 -236241526 + AluSx SINE Alu 1 312 0 597 232 166 82 chr1 45952138 45952272 -236241392 + L1ME4a LINE L1 5717 5838 -283 2347 77 0 0 chr1 45952272 45952569 -236241095 - AluSx SINE Alu -15 297 1 597 232 166 82 chr1 45952569 45952742 -236240922 + L1ME4a LINE L1 5838 6074 -47 496 326 63 25 chr1 45952823 45953062 -236240602 - MIR SINE MIR 0 262 15 326 190 13 38 chr1 45953172 45953251 -236240413 - MIR SINE MIR -87 121 45 536 326 149 14 chr1 45953635 45953856 -236239808 - MIR SINE MIR -11 251 1 829 145 8 8 chr1 45953972 45954103 -236239561 + FLAM_C SINE Alu 2 132 -1 258 350 21 0 chr1 45955415 45955512 -236238152 - MIR3 SINE MIR 0 208 110 * 722 265 43 39 chr1 45955498 45955754 -236237910 + MIR SINE MIR 5 262 0 258 307 20 0 chr1 45956186 45956287 -236237377 + L2 LINE L2 2571 2673 -641 456 206 103 16 chr1 45956332 45956458 -236237206 + MIR3 SINE MIR 56 192 -16 242 226 316 65 chr1 45957006 45957161 -236236503 + MIR3 SINE MIR 15 208 0 192 311 9 94 chr1 45959700 45959755 -236233909 + L3b LINE CR1 1485 1528 -55 610 219 150 52 chr1 45959755 45959988 -236233676 - MER112 DNA MER1_type 0 256 1 192 311 9 94 chr1 45959988 45960038 -236233626 + L3b LINE CR1 1528 1581 -2 2157 96 27 0 chr1 45960275 45960576 -236233088 - AluSp SINE Alu -4 309 1 616 304 11 31 chr1 45960585 45960776 -236232888 - MIR SINE MIR -71 191 5 458 291 42 18 chr1 45961339 45961504 -236232160 + MIR SINE MIR 94 262 0 182 333 81 24 chr1 45961550 45961673 -236231991 - L3 LINE CR1 -544 1033 904 378 235 0 0 chr1 45962277 45962358 -236231306 + MIR SINE MIR 74 154 -108 519 143 0 0 chr1 45962539 45962616 -236231048 - MER2 DNA MER2_type -1 344 268 436 188 207 24 chr1 45962729 45962779 -236230885 - Tigger3(Golem) DNA MER2_type -55 2973 2933 435 52 0 0 chr1 45962779 45962837 -236230827 + (TA)n Simple_repeat Simple_repeat 2 59 0 436 188 207 24 chr1 45962837 45963021 -236230643 - Tigger3(Golem) DNA MER2_type -95 2933 7 737 88 0 219 chr1 45963027 45963060 -236230604 - MER2 DNA MER2_type -193 152 113 841 149 0 22 chr1 45963060 45963194 -236230470 + FLAM_A SINE Alu 1 131 -2 737 88 0 219 chr1 45963194 45963238 -236230426 - MER2 DNA MER2_type -232 113 61 1851 147 23 16 chr1 45963238 45963545 -236230119 - AluSg SINE Alu -1 309 1 1673 114 8 27 chr1 45963549 45963811 -236229853 - AluSx SINE Alu -14 298 42 737 88 0 219 chr1 45963811 45963919 -236229745 - MER2 DNA MER2_type -287 58 3 2084 118 16 0 chr1 45965143 45965448 -236228216 - AluY SINE Alu -1 310 1 442 259 121 17 chr1 45966499 45966673 -236226991 - MIR SINE MIR -12 250 59 370 367 57 0 chr1 45966707 45966865 -236226799 - MIR SINE MIR -8 254 88 224 313 38 12 chr1 45966941 45967021 -236226643 - MIR SINE MIR -80 182 101 213 315 48 11 chr1 45967014 45967180 -236226484 + MIR SINE MIR 5 261 -1 * 1696 177 3 13 chr1 45967338 45967648 -236226016 + AluJo SINE Alu 1 307 -5 2384 63 0 0 chr1 45967715 45968002 -236225662 + AluY SINE Alu 1 287 -24 276 324 45 9 chr1 45968019 45968130 -236225534 - MIR SINE MIR -76 132 18 605 276 51 32 chr1 45968158 45968375 -236225289 + MIR SINE MIR 29 249 -13 264 122 0 0 chr1 45968881 45968922 -236224742 + (TG)n Simple_repeat Simple_repeat 1 41 0 460 240 120 33 chr1 45973499 45973682 -236219982 + MIR3 SINE MIR 8 206 -2 1647 176 0 0 chr1 45975702 45975974 -236217690 + AluJo SINE Alu 1 272 -40 300 341 57 0 chr1 45976149 45976360 -236217304 + L1M4 LINE L1 4259 4481 -1665 * 3025 138 36 2 chr1 45976350 45976373 -236217291 + L1MB8 LINE L1 5471 5492 -686 2329 100 0 0 chr1 45976373 45976680 -236216984 + AluY SINE Alu 1 299 -12 3025 138 36 2 chr1 45976680 45977163 -236216501 + L1MB8 LINE L1 5492 5991 -187 975 237 126 38 chr1 45977166 45977673 -236215991 + L1ME LINE L1 1667 2218 -4178 * 1288 218 96 35 chr1 45977663 45977715 -236215949 + L1ME LINE L1 3946 3993 -2242 2069 74 99 0 chr1 45977715 45977998 -236215666 + AluY SINE Alu 1 311 0 1288 218 96 35 chr1 45977998 45978931 -236214733 + L1ME LINE L1 3993 4867 -1368 2535 87 0 0 chr1 45978931 45979243 -236214421 - AluSx SINE Alu 0 312 1 1288 218 96 35 chr1 45979243 45979922 -236213742 + L1ME LINE L1 4867 5809 -426 317 125 0 0 chr1 45979897 45979953 -236213711 + L1ME1 LINE L1 5326 5381 -979 * 236 182 0 0 chr1 45979952 45979996 -236213668 + L1ME1 LINE L1 5774 5817 -418 * 368 117 78 0 chr1 45980000 45980077 -236213587 - LTR41 LTR ERVL -2 771 689 2115 192 29 67 chr1 45980077 45980436 -236213228 + L1MA9 LINE L1 4930 5301 -1011 2351 92 7 0 chr1 45980436 45980728 -236212936 + AluSx SINE Alu 1 294 -18 2115 192 29 67 chr1 45980728 45981047 -236212617 + L1MA9 LINE L1 5301 5630 -682 2529 54 0 7 chr1 45981047 45981372 -236212292 + AluY SINE Alu 1 311 0 2115 192 29 67 chr1 45981372 45982115 -236211549 + L1MA9 LINE L1 5630 6282 -30 250 301 124 13 chr1 45982116 45982269 -236211395 - LTR41 LTR ERVL -58 715 546 583 253 56 6 chr1 45982734 45982912 -236210752 - LTR41 LTR ERVL -586 187 1 294 195 35 23 chr1 45982912 45982999 -236210665 + L1ME1 LINE L1 5748 5835 -329 1222 199 81 29 chr1 45983002 45983110 -236210554 - MER2 DNA MER2_type 0 345 244 2069 108 41 0 chr1 45983110 45983405 -236210259 + AluSx SINE Alu 6 312 0 1222 199 81 29 chr1 45983405 45983603 -236210061 - MER2 DNA MER2_type -101 244 23 1120 229 72 22 chr1 45983608 45983937 -236209727 + L1ME1 LINE L1 5831 6333 -1 783 188 0 8 chr1 45983949 45984082 -236209582 + AluJo SINE Alu 3 134 -178 2473 116 111 5 chr1 45984086 45984491 -236209173 + MER83 LTR ERV1 1 448 0 2200 174 139 116 chr1 45984722 45985570 -236208094 - LTR28 LTR ERV1 -1 1019 1 271 255 105 52 chr1 45985652 45985805 -236207859 + L1M1 LINE L1 5621 5781 -523 2247 108 0 0 chr1 45986444 45986739 -236206925 + AluY SINE Alu 1 295 -16 2088 202 26 19 chr1 45986749 45987164 -236206500 + LOR1b LTR ERV1 44 461 0 266 305 8 30 chr1 45987694 45987825 -236205839 + G-rich Low_complexity Low_complexity 4 131 0 207 279 0 16 chr1 45988210 45988271 -236205393 - MIR3 SINE MIR -25 183 124 1093 173 0 0 chr1 45988275 45988443 -236205221 + 7SLRNA srpRNA srpRNA 1 168 -152 336 24 0 0 chr1 45988504 45988545 -236205119 + (TG)n Simple_repeat Simple_repeat 2 42 0 1987 128 21 7 chr1 45988545 45988827 -236204837 - AluSx SINE Alu -26 286 1 652 154 94 26 chr1 45988923 45989061 -236204603 - FLAM_C SINE Alu 0 143 6 2044 138 3 0 chr1 45989432 45989722 -236203942 - AluJb SINE Alu -21 291 1 2412 99 0 0 chr1 45989811 45990123 -236203541 - AluSx SINE Alu 0 312 1 294 104 21 0 chr1 45990144 45990192 -236203472 - MLT2D LTR ERVL 0 464 416 1578 167 17 69 chr1 45990266 45990626 -236203038 - MLT2D LTR ERVL -71 343 3 2351 84 37 0 chr1 45990627 45990925 -236202739 + AluY SINE Alu 1 309 -2 306 278 103 51 chr1 45991058 45991331 -236202333 - L1M4 LINE L1 -753 5393 5107 738 291 51 0 chr1 45991422 45991656 -236202008 + MIR SINE MIR 11 256 -6 1581 155 49 4 chr1 45991749 45992014 -236201650 + AluJo SINE Alu 12 288 -24 2217 113 0 0 chr1 45992055 45992347 -236201317 - AluSg SINE Alu -18 292 1 369 227 84 42 chr1 45992349 45992468 -236201196 - L2 LINE L2 -8 3305 3182 873 185 112 5 chr1 45992475 45992680 -236200984 - MIR SINE MIR -11 251 25 192 209 0 0 chr1 45992838 45992881 -236200783 - L2 LINE L2 -54 3218 3176 185 303 8 76 chr1 45992980 45993112 -236200552 - L2 LINE L2 -236 3036 2914 2027 119 60 0 chr1 45993136 45993421 -236200243 + AluSx SINE Alu 1 302 -10 199 330 0 21 chr1 45993530 45993627 -236200037 - L2 LINE L2 -568 2746 2652 317 98 0 0 chr1 45993636 45993677 -236199987 - MSTA LTR MaLR 0 428 388 2219 88 0 7 chr1 45993677 45993999 -236199665 + AluSc SINE Alu 1 320 0 1226 129 0 0 chr1 45993999 45994169 -236199495 + AluSg/x SINE Alu 133 302 -10 387 269 0 0 chr1 45994213 45994321 -236199343 - L2 LINE L2 -1212 2102 1995 4843 146 30 26 chr1 45994322 45995406 -236198258 + L1MB3 LINE L1 4804 5908 -275 2066 106 0 76 chr1 45995406 45995736 -236197928 + AluSq SINE Alu 1 305 -8 4843 146 30 26 chr1 45995736 45995856 -236197808 + L1MB3 LINE L1 5908 6026 -157 1865 119 11 83 chr1 45995857 45996011 -236197653 - MER44D DNA MER2_type -1883 608 444 7018 74 0 10 chr1 45996011 45997301 -236196363 + L1PA11 LINE L1 4892 6173 -1 1865 119 11 83 chr1 45997301 45997506 -236196158 - MER44D DNA MER2_type -2047 444 5 408 225 108 0 chr1 45997506 45997617 -236196047 + L1MB3 LINE L1 6024 6146 -37 1764 132 4 22 chr1 45997619 45997794 -236195870 - AluJb SINE Alu -6 306 136 2090 148 0 7 chr1 45997794 45998098 -236195566 - AluSx SINE Alu -10 302 1 1764 132 4 22 chr1 45998098 45998195 -236195469 - AluJb SINE Alu -176 136 39 506 181 0 0 chr1 45998195 45998278 -236195386 - AluJ/FLAM SINE Alu -224 88 6 1513 183 3 26 chr1 45998342 45998648 -236195016 + AluJo SINE Alu 5 303 -9 2184 125 24 0 chr1 45998937 45999266 -236194398 - MER1B DNA MER1_type 0 337 1 683 193 0 50 chr1 45999596 45999736 -236193928 + FLAM_A SINE Alu 1 133 0 201 179 75 45 chr1 46000147 46000214 -236193450 - L2 LINE L2 -97 3216 3148 728 191 27 7 chr1 46000254 46000401 -236193263 - FRAM SINE Alu -17 159 10 1196 208 97 50 chr1 46001893 46002025 -236191639 - MER66B LTR ERV1 -3 483 359 1858 203 46 102 chr1 46002025 46002612 -236191052 - MLT2B3 LTR ERVL 0 554 1 1196 208 97 50 chr1 46002612 46002906 -236190758 - MER66B LTR ERV1 -127 359 97 234 265 34 51 chr1 46003120 46003237 -236190427 + HsTC2 DNA Tc2 171 285 -1613 2565 62 7 0 chr1 46003402 46003709 -236189955 - AluY SINE Alu -2 309 1 280 322 82 38 chr1 46003800 46003905 -236189759 - L2 LINE L2 -1670 1644 1545 2467 84 0 0 chr1 46003905 46004203 -236189461 - AluSx SINE Alu -14 298 1 280 322 82 38 chr1 46004203 46004364 -236189300 - L2 LINE L2 -1769 1545 1366 2299 95 10 0 chr1 46004433 46004727 -236188937 - AluSx SINE Alu -15 297 1 402 271 76 95 chr1 46004729 46004843 -236188821 - MIR SINE MIR -17 245 135 2472 75 3 3 chr1 46004843 46005151 -236188513 + AluSg SINE Alu 1 308 -2 402 271 76 95 chr1 46005151 46005246 -236188418 - MIR SINE MIR -127 135 40 2052 154 0 3 chr1 46005356 46005668 -236187996 + AluJo SINE Alu 1 311 -1 2319 92 3 0 chr1 46005881 46006175 -236187489 + AluSc SINE Alu 1 295 -14 213 265 0 0 chr1 46006470 46006519 -236187145 + L2 LINE L2 3217 3265 -7 241 235 61 41 chr1 46007545 46007643 -236186021 + MER21B LTR ERV1 1 100 -763 1751 219 34 8 chr1 46007643 46008000 -236185664 + MER21B LTR ERV1 43 408 -455 2099 211 26 12 chr1 46008069 46008490 -236185174 + MER21B LTR ERV1 415 841 -22 2246 89 10 0 chr1 46009015 46009308 -236184356 - AluSx SINE Alu -16 296 1 269 276 26 26 chr1 46009727 46009843 -236183821 + MER5A DNA MER1_type 74 189 0 1783 134 75 14 chr1 46009967 46010259 -236183405 - AluSx SINE Alu -2 310 1 773 159 0 36 chr1 46010718 46010744 -236182920 - FLAM_C SINE Alu -179 133 108 2234 111 26 34 chr1 46010744 46011122 -236182542 + THE1C LTR MaLR 1 375 0 773 159 0 36 chr1 46011122 46011233 -236182431 - FLAM_C SINE Alu -204 108 1 314 256 83 25 chr1 46011241 46011362 -236182302 + MER5A DNA MER1_type 51 178 -11 2134 82 68 3 chr1 46011712 46012004 -236181660 - AluSx SINE Alu -1 311 1 2316 95 0 16 chr1 46013086 46013391 -236180273 + AluSc SINE Alu 1 300 -9 2082 142 14 38 chr1 46013524 46013869 -236179795 - MER1B DNA MER1_type 0 337 1 2000 90 101 0 chr1 46014367 46014645 -236179019 - AluSq SINE Alu -7 306 1 2119 131 0 0 chr1 46014795 46015085 -236178579 - AluSx SINE Alu -22 290 1 230 354 40 56 chr1 46015085 46015283 -236178381 + MIR SINE MIR 47 241 -21 1949 121 61 0 chr1 46015300 46015580 -236178084 - AluSx SINE Alu -15 297 1 428 193 12 0 chr1 46015824 46015907 -236177757 - L1ME1 LINE L1 -163 6003 5920 2743 69 21 51 chr1 46015907 46016106 -236177558 + MER51B LTR ERV1 1 184 -193 7959 54 4 1 chr1 46016106 46017880 -236175784 - L1PA6 LINE L1 0 6154 4380 2743 69 21 51 chr1 46017880 46018069 -236175595 + MER51B LTR ERV1 184 377 0 2195 180 35 24 chr1 46018069 46018339 -236175325 - L1ME1 LINE L1 -243 5923 5644 1615 77 39 4 chr1 46018339 46018572 -236175092 - L1PA8 LINE L1 -3 6169 5929 2195 180 35 24 chr1 46018572 46018762 -236174902 - L1ME1 LINE L1 -522 5644 5458 1422 188 88 153 chr1 46018774 46019396 -236174268 + MLT1E LTR MaLR 3 584 -9 690 211 11 11 chr1 46019402 46019577 -236174087 - L1ME1 LINE L1 -887 5457 5283 744 210 6 12 chr1 46019586 46019748 -236173916 - FRAM SINE Alu -15 161 1 401 244 64 41 chr1 46019768 46019787 -236173877 - L1ME1 LINE L1 -875 5271 5254 2226 128 141 3 chr1 46019787 46019850 -236173814 - MSTA LTR MaLR 0 428 375 2091 97 8 0 chr1 46019850 46020118 -236173546 + AluSg SINE Alu 41 310 0 2226 128 141 3 chr1 46020118 46020430 -236173234 - MSTA LTR MaLR -53 375 1 401 244 64 41 chr1 46020430 46020582 -236173082 - L1ME1 LINE L1 -892 5254 5096 676 175 18 0 chr1 46020594 46020708 -236172956 + FLAM_A SINE Alu 12 127 -15 343 179 11 32 chr1 46020711 46020806 -236172858 - L1ME1 LINE L1 -1062 5084 4992 2440 93 0 0 chr1 46020806 46021118 -236172546 - AluSx SINE Alu 0 312 1 3117 158 20 24 chr1 46021134 46021203 -236172461 - L1MB8 LINE L1 0 6178 6110 2377 111 0 0 chr1 46021203 46021510 -236172154 - AluSx SINE Alu -5 307 1 3117 158 20 24 chr1 46021510 46022033 -236171631 - L1MB8 LINE L1 -68 6110 5588 1949 128 0 24 chr1 46022133 46022248 -236171416 - AluSx SINE Alu 0 312 196 7986 70 2 2 chr1 46022248 46023217 -236170447 - LTR5 LTR ERVK 0 969 1 1949 128 0 24 chr1 46023217 46023397 -236170267 - AluSx SINE Alu -116 196 24 1896 216 95 73 chr1 46023402 46023598 -236170066 - L1ME1 LINE L1 -2300 3846 3656 2348 103 0 10 chr1 46023598 46023910 -236169754 - AluSq SINE Alu -2 311 3 1896 216 95 73 chr1 46023910 46024412 -236169252 - L1ME1 LINE L1 -2490 3656 3127 1982 100 48 7 chr1 46024412 46024702 -236168962 - AluSx SINE Alu -10 302 1 1896 216 95 73 chr1 46024702 46024767 -236168897 - L1ME1 LINE L1 -3019 3127 3065 180 77 0 0 chr1 46024835 46024861 -236168803 + (A)n Simple_repeat Simple_repeat 1 26 0 1892 102 28 4 chr1 46024933 46025188 -236168476 + AluY SINE Alu 34 294 -17 2160 117 0 0 chr1 46025272 46025591 -236168073 + AluSx SINE Alu 3 321 0 477 212 20 0 chr1 46025635 46025734 -236167930 + MLT1A1 LTR MaLR 214 314 -51 1949 240 102 54 chr1 46025873 46026412 -236167252 - L1MC4a LINE L1 -747 5399 5443 1770 139 16 0 chr1 46026412 46026670 -236166994 + AluY SINE Alu 23 284 -27 294 45 0 23 chr1 46026670 46026714 -236166950 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 1949 240 102 54 chr1 46026714 46026963 -236166701 - L1MC4a LINE L1 -702 5444 5209 580 269 50 34 chr1 46027351 46027671 -236165993 - L1ME4a LINE L1 -246 5875 5551 1671 186 0 16 chr1 46027788 46028095 -236165569 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr1 46028147 46028168 -236165496 + AT_rich Low_complexity Low_complexity 1 21 0 2380 81 0 7 chr1 46028315 46028610 -236165054 + AluSq SINE Alu 1 293 -20 2792 122 33 4 chr1 46028612 46029071 -236164593 - L1MC1 LINE L1 -66 6267 5796 2285 116 0 0 chr1 46029071 46029374 -236164290 - AluSq SINE Alu -10 303 1 21 57 0 0 chr1 46029462 46029497 -236164167 + AT_rich Low_complexity Low_complexity 1 35 0 4280 31 8 0 chr1 46029551 46030029 -236163635 - L1PA4 LINE L1 0 6155 5674 1920 194 80 2 chr1 46030030 46030431 -236163233 - L1MD2 LINE L1 -183 6176 5745 816 249 79 44 chr1 46030447 46030789 -236162875 - L2 LINE L2 -595 2719 2366 251 329 116 0 chr1 46030792 46030947 -236162717 + L1ME LINE L1 5418 5590 -531 294 315 0 0 chr1 46030953 46031045 -236162619 + L1ME LINE L1 5616 5707 -414 301 176 27 0 chr1 46031045 46031119 -236162545 + GA-rich Low_complexity Low_complexity 1 76 0 1469 163 100 0 chr1 46031168 46031419 -236162245 - AluJo SINE Alu -36 276 1 774 262 82 57 chr1 46031899 46032072 -236161592 + L1ME LINE L1 5258 5425 -696 2373 89 3 0 chr1 46032072 46032376 -236161288 + AluSp SINE Alu 1 305 -8 774 262 82 57 chr1 46032376 46032590 -236161074 + L1ME LINE L1 5425 5652 -469 954 256 132 114 chr1 46032592 46033263 -236160401 + L2 LINE L2 1888 2576 -738 1767 173 0 13 chr1 46033263 46033399 -236160265 + AluJo SINE Alu 2 138 -174 2175 91 34 3 chr1 46033399 46033697 -236159967 + AluSp SINE Alu 1 307 -6 1767 173 0 13 chr1 46033697 46033861 -236159803 + AluJo SINE Alu 138 298 -14 954 256 132 114 chr1 46033861 46033963 -236159701 + L2 LINE L2 2576 2675 -639 363 315 135 22 chr1 46033963 46034185 -236159479 + L2 LINE L2 2093 2339 -975 489 284 102 0 chr1 46034487 46034614 -236159050 + MER5B DNA MER1_type 39 178 0 2503 90 0 0 chr1 46034656 46034968 -236158696 + AluSx SINE Alu 1 312 0 2088 86 15 4 chr1 46035638 46035907 -236157757 + AluSx SINE Alu 1 272 -40 6779 122 35 87 chr1 46035907 46037803 -236155861 + pTR5 LTR ERV1 844 2438 0 1735 136 16 0 chr1 46037806 46038057 -236155607 - AluSp SINE Alu -58 255 1 2123 133 0 9 chr1 46038124 46038439 -236155225 - AluJo SINE Alu 0 312 1 2124 108 4 0 chr1 46039013 46039321 -236154343 + AluSg SINE Alu 1 309 0 2346 95 3 0 chr1 46040276 46040582 -236153082 + AluSq SINE Alu 1 307 -6 2382 109 0 0 chr1 46040606 46040919 -236152745 + AluSq SINE Alu 1 313 0 25 0 0 0 chr1 46040992 46041017 -236152647 + AT_rich Low_complexity Low_complexity 1 25 0 1639 156 0 8 chr1 46041036 46041293 -236152371 + AluJb SINE Alu 1 255 -57 603 129 0 0 chr1 46041326 46041411 -236152253 + AluJ/FRAM SINE Alu 219 303 -9 1941 103 4 4 chr1 46042291 46042552 -236151112 - AluSx SINE Alu -7 305 45 543 162 50 0 chr1 46042593 46042692 -236150972 - L1MB4 LINE L1 -6 6174 6071 3737 148 21 17 chr1 46042945 46043336 -236150328 + L1MB1 LINE L1 5479 5876 -292 1607 171 41 17 chr1 46043336 46043457 -236150207 + AluJo SINE Alu 1 118 -194 225 0 0 0 chr1 46043457 46043482 -236150182 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1607 171 41 17 chr1 46043482 46043653 -236150011 + AluJo SINE Alu 118 300 -12 3737 148 21 17 chr1 46043653 46043925 -236149739 + L1MB1 LINE L1 5876 6145 -23 1408 168 38 41 chr1 46044154 46044445 -236149219 - AluJb SINE Alu -18 294 5 451 293 64 21 chr1 46045271 46045459 -236148205 - MARNA DNA Mariner -348 238 43 189 0 0 0 chr1 46045847 46045868 -236147796 + (A)n Simple_repeat Simple_repeat 1 21 0 1538 174 3 42 chr1 46045870 46046157 -236147507 + AluJo SINE Alu 22 297 -15 1160 53 0 0 chr1 46046157 46046288 -236147376 + AluY SINE Alu 1 131 -180 2257 88 0 41 chr1 46046290 46046608 -236147056 + AluY SINE Alu 1 305 -6 2236 120 0 0 chr1 46046706 46047015 -236146649 + AluSg SINE Alu 1 309 -1 22 35 0 0 chr1 46047085 46047114 -236146550 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr1 46047478 46047505 -236146159 + AT_rich Low_complexity Low_complexity 1 27 0 2382 107 0 0 chr1 46049022 46049331 -236144333 + AluSc SINE Alu 1 309 0 2102 97 65 0 chr1 46050593 46050883 -236142781 + AluSc SINE Alu 1 309 0 2443 73 0 0 chr1 46051487 46051789 -236141875 + AluY SINE Alu 1 302 -9 1024 165 0 6 chr1 46052067 46052231 -236141433 + FRAM SINE Alu 1 156 -20 608 295 95 5 chr1 46052970 46053180 -236140484 - MIR SINE MIR 0 262 34 2180 83 38 17 chr1 46053760 46054050 -236139614 + AluY SINE Alu 1 296 -15 1460 139 171 0 chr1 46054191 46054443 -236139221 - AluJo SINE Alu -9 303 9 2038 184 21 58 chr1 46054847 46055364 -236138300 + L1M4 LINE L1 4867 5364 -782 226 207 58 46 chr1 46055356 46055443 -236138221 + L1MC4 LINE L1 6613 6700 -1342 * 261 200 0 0 chr1 46055424 46055469 -236138195 + L1M LINE L1 5356 5400 -766 * 3012 148 34 108 chr1 46055438 46055713 -236137951 + L1MB7 LINE L1 5304 5598 -586 1532 147 6 92 chr1 46055713 46055914 -236137750 - AluJo SINE Alu -3 309 145 2350 87 0 0 chr1 46055914 46056202 -236137462 + AluY SINE Alu 1 288 -23 1532 147 6 92 chr1 46056202 46056327 -236137337 - AluJo SINE Alu -167 145 11 3012 148 34 108 chr1 46056327 46056392 -236137272 + L1MB7 LINE L1 5598 5666 -518 1706 112 140 0 chr1 46056392 46056667 -236136997 - AluSx SINE Alu 0 310 1 3012 148 34 108 chr1 46056667 46056950 -236136714 + L1MB7 LINE L1 5666 5968 -216 1429 189 143 4 chr1 46056950 46057215 -236136449 + AluJb SINE Alu 1 302 0 3012 148 34 108 chr1 46057215 46057488 -236136176 + L1MB7 LINE L1 5968 6111 -73 2172 121 0 10 chr1 46057488 46057785 -236135879 - AluSx SINE Alu -18 294 1 3012 148 34 108 chr1 46057785 46057854 -236135810 + L1MB7 LINE L1 6111 6184 0 6546 22 3 0 chr1 46058014 46058729 -236134935 + L1PA3 LINE L1 5438 6154 -1 2631 48 0 3 chr1 46058822 46059131 -236134533 - AluY SINE Alu -3 308 1 807 204 171 0 chr1 46059253 46059434 -236134230 + MER58A DNA MER1_type 1 212 -12 481 127 0 25 chr1 46059741 46059820 -236133844 + Tigger2 DNA MER2_type 1 77 -2641 743 254 0 43 chr1 46059846 46060031 -236133633 - MER8 DNA MER2_type -62 177 1 459 239 99 89 chr1 46060031 46060246 -236133418 + L1M4 LINE L1 4107 4318 -1828 1631 185 35 0 chr1 46060246 46060532 -236133132 - AluJo SINE Alu -16 296 1 459 239 99 89 chr1 46060532 46060702 -236132962 + L1M4 LINE L1 4318 4501 -1645 2510 82 3 0 chr1 46060702 46061006 -236132658 + AluSq SINE Alu 1 305 -8 459 239 99 89 chr1 46061006 46061112 -236132552 + L1M4 LINE L1 4501 4604 -1542 2303 101 7 10 chr1 46061116 46061422 -236132242 + AluSx SINE Alu 1 305 -7 518 286 52 7 chr1 46062876 46063030 -236130634 + MIR SINE MIR 20 180 -82 2355 229 57 97 chr1 46063913 46064361 -236129303 - L2 LINE L2 -1203 2111 1647 1728 172 17 3 chr1 46064361 46064658 -236129006 + AluJb SINE Alu 1 301 -11 2355 229 57 97 chr1 46064658 46064704 -236128960 - L2 LINE L2 -1667 1647 1601 2325 80 0 0 chr1 46064704 46064993 -236128671 + AluSx SINE Alu 1 289 -23 2355 229 57 97 chr1 46064993 46065333 -236128331 - L2 LINE L2 -1713 1601 1314 739 147 77 24 chr1 46065333 46065503 -236128161 + MER104 DNA MER2_type 1 179 -1 2355 229 57 97 chr1 46065503 46065591 -236128073 - L2 LINE L2 -2000 1314 1224 294 30 0 0 chr1 46065592 46065625 -236128039 + U2 snRNA snRNA 1 33 -155 276 77 0 0 chr1 46065687 46065726 -236127938 + (TCCCC)n Simple_repeat Simple_repeat 4 42 0 722 163 85 19 chr1 46065899 46066163 -236127501 - L1MC5 LINE L1 -52 7909 7605 579 222 30 44 chr1 46066189 46066324 -236127340 + AluJo SINE Alu 112 244 -68 1765 198 62 75 chr1 46066328 46066863 -236126801 - L1MC5 LINE L1 -774 7187 6660 670 286 0 6 chr1 46066898 46067073 -236126591 + MIR SINE MIR 12 185 -77 2617 114 30 94 chr1 46067078 46067577 -236126087 - L1MA5A LINE L1 -10 6287 5821 1657 83 0 0 chr1 46067585 46067790 -236125874 - L1PA5 LINE L1 -5 6149 5945 1697 181 3 0 chr1 46068333 46068667 -236124997 - AluJb SINE Alu 0 335 1 9197 115 20 6 chr1 46069023 46070293 -236123371 + HSMAR1 DNA Mariner 1 1287 0 364 289 25 31 chr1 46072565 46072724 -236120940 + L1ME3A LINE L1 5963 6120 -50 946 237 53 0 chr1 46072741 46072948 -236120716 - MER20 DNA MER1_type 0 219 2 294 273 0 0 chr1 46073437 46073514 -236120150 + A-rich Low_complexity Low_complexity 1 77 0 930 269 123 44 chr1 46073768 46074158 -236119506 - MLT1J2 LTR MaLR 0 450 30 2993 217 59 13 chr1 46074722 46075509 -236118155 + L1ME1 LINE L1 5356 6334 0 1201 273 82 9 chr1 46075532 46075957 -236117707 + L1MC4 LINE L1 7443 7898 -144 1652 223 52 23 chr1 46076006 46076470 -236117194 + L1ME LINE L1 5261 5729 -437 499 364 83 26 chr1 46077322 46077781 -236115883 - MLT1K LTR MaLR -64 524 40 2117 117 3 0 chr1 46078426 46078724 -236114940 - AluSq SINE Alu -14 299 1 412 262 277 38 chr1 46078915 46079362 -236114302 + L2 LINE L2 1942 2495 -819 507 243 10 0 chr1 46079387 46079490 -236114174 + MLT1J LTR MaLR 31 134 -377 592 231 253 9 chr1 46079518 46079739 -236113925 + MLT1J LTR MaLR 234 508 -3 279 353 58 23 chr1 46079799 46080142 -236113522 + L2 LINE L2 2623 2977 -337 393 246 30 75 chr1 46080176 46080310 -236113354 - MIR SINE MIR -41 221 94 2123 89 24 0 chr1 46080363 46080654 -236113010 - AluSx SINE Alu -12 300 3 221 271 19 2 chr1 46080708 46080768 -236112896 + MIR SINE MIR 25 85 -123 519 268 76 4 chr1 46080776 46080960 -236112704 + MLT1J LTR MaLR 1 164 -286 270 244 90 0 chr1 46081077 46081155 -236112509 + MLT1J LTR MaLR 278 362 -149 1638 141 72 4 chr1 46081220 46081496 -236112168 + AluJo SINE Alu 1 295 -17 205 333 0 0 chr1 46081526 46081604 -236112060 - MIR SINE MIR -2 260 183 * 298 241 12 48 chr1 46081603 46081686 -236111978 + MIR SINE MIR 74 153 -109 236 263 88 29 chr1 46082054 46082191 -236111473 - L3 LINE CR1 -316 1261 1117 373 280 97 27 chr1 46082236 46082422 -236111242 - MIR SINE MIR -16 246 48 753 125 27 0 chr1 46082608 46082720 -236110944 + AluJb SINE Alu 2 116 -196 695 107 10 0 chr1 46082800 46082903 -236110761 - AluSp/q SINE Alu -10 303 200 1201 147 10 0 chr1 46083003 46083201 -236110463 + AluSg/x SINE Alu 112 311 -1 3328 121 62 41 chr1 46083202 46083502 -236110162 + Tigger3(Golem) DNA MER2_type 2437 2729 -299 2027 141 0 0 chr1 46083502 46083814 -236109850 - AluSx SINE Alu 0 312 1 3328 121 62 41 chr1 46083814 46084093 -236109571 + Tigger3(Golem) DNA MER2_type 2729 3028 0 432 300 23 8 chr1 46084109 46084239 -236109425 + L2 LINE L2 3182 3313 0 190 129 0 0 chr1 46084341 46084372 -236109292 - MIR SINE MIR -67 141 111 872 142 88 14 chr1 46085140 46085288 -236108376 + FRAM SINE Alu 4 162 -4 637 285 62 0 chr1 46085330 46085523 -236108141 - MIR SINE MIR 0 262 58 774 104 17 0 chr1 46135548 46135663 -236058001 + FRAM SINE Alu 58 174 -2 636 307 75 64 chr1 46135668 46136271 -236057393 + L2 LINE L2 2710 3311 -2 217 262 112 19 chr1 46136280 46136387 -236057277 + L2 LINE L2 3153 3269 -44 1922 152 3 10 chr1 46136430 46136732 -236056932 + AluJo SINE Alu 3 302 -10 254 156 16 47 chr1 46137227 46137291 -236056373 + (CATA)n Simple_repeat Simple_repeat 1 62 0 1772 165 71 34 chr1 46137291 46137642 -236056022 + MLT1A1 LTR MaLR 1 364 -1 291 160 53 27 chr1 46137651 46137726 -236055938 + L2 LINE L2 3141 3217 -96 576 251 42 124 chr1 46137789 46138120 -236055544 - L2 LINE L2 -373 2941 2584 2433 77 0 3 chr1 46138120 46138418 -236055246 + AluSg SINE Alu 1 297 -13 576 251 42 124 chr1 46138418 46138432 -236055232 - L2 LINE L2 -730 2584 2632 1737 166 35 14 chr1 46138432 46138721 -236054943 + AluJb SINE Alu 1 295 -17 576 251 42 124 chr1 46138721 46138784 -236054880 - L2 LINE L2 -681 2633 2566 262 310 60 0 chr1 46138835 46138935 -236054729 - MIR SINE MIR -64 198 93 204 241 130 55 chr1 46139449 46139598 -236054066 - MIR SINE MIR -65 143 51 284 265 167 96 chr1 46139711 46139738 -236053926 + L2 LINE L2 355 379 -2935 2469 97 0 0 chr1 46139738 46140049 -236053615 - AluY SINE Alu 0 311 1 284 265 167 96 chr1 46140049 46140530 -236053134 + L2 LINE L2 379 899 -2415 806 323 110 39 chr1 46141222 46142074 -236051590 + L2 LINE L2 1826 2738 -576 206 348 76 43 chr1 46142174 46142358 -236051306 + L2 LINE L2 2892 3081 -191 226 200 0 0 chr1 46142723 46142763 -236050901 + GA-rich Low_complexity Low_complexity 4 43 0 295 356 44 11 chr1 46143053 46143233 -236050431 + MIR3 SINE MIR 16 201 -7 408 252 0 19 chr1 46144265 46144372 -236049292 + MIR SINE MIR 42 146 -62 1684 157 44 37 chr1 46144902 46145196 -236048468 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 46145374 46145395 -236048269 + AT_rich Low_complexity Low_complexity 1 21 0 273 303 10 40 chr1 46145606 46145705 -236047959 - L2 LINE L2 -12 3301 3206 473 276 155 93 chr1 46145734 46146005 -236047659 + L3 LINE CR1 1084 1397 -180 2522 83 3 0 chr1 46146005 46146317 -236047347 + AluSp SINE Alu 1 313 0 473 276 155 93 chr1 46146317 46146509 -236047155 + L3 LINE CR1 1397 1576 -1 240 367 83 0 chr1 46146700 46146820 -236046844 - L2 LINE L2 -2 3270 3141 2366 90 10 0 chr1 46147678 46147968 -236045696 - AluSx SINE Alu -19 293 1 295 296 51 0 chr1 46148177 46148275 -236045389 + L2 LINE L2 3201 3303 -10 758 183 40 198 chr1 46148283 46148529 -236045135 + L1MC4 LINE L1 7537 7820 -222 2159 125 0 0 chr1 46148529 46148816 -236044848 - AluSx SINE Alu -25 287 1 758 183 40 198 chr1 46148816 46148849 -236044815 + L1MC4 LINE L1 7820 7857 -185 2399 69 0 36 chr1 46148849 46149155 -236044509 - AluY SINE Alu -16 295 1 758 183 40 198 chr1 46149155 46149474 -236044190 + L1MC4 LINE L1 7857 8041 -1 303 71 0 0 chr1 46149853 46149895 -236043769 + (CAGG)n Simple_repeat Simple_repeat 2 43 0 2435 81 0 16 chr1 46152815 46153124 -236040540 - AluSx SINE Alu -8 304 1 256 254 18 0 chr1 46153321 46153376 -236040288 + L2 LINE L2 3208 3263 -9 219 69 0 0 chr1 46154733 46154762 -236038902 + (TG)n Simple_repeat Simple_repeat 2 30 0 30 45 0 0 chr1 46154864 46154908 -236038756 + AT_rich Low_complexity Low_complexity 1 44 0 2227 85 10 0 chr1 46154912 46155206 -236038458 + AluSg SINE Alu 1 297 -13 1828 154 43 0 chr1 46155208 46155488 -236038176 + AluJo SINE Alu 5 296 -16 286 289 33 0 chr1 46155832 46155922 -236037742 + MIR3 SINE MIR 110 202 -6 631 261 69 23 chr1 46156064 46156324 -236037340 + HAL1 LINE L1 99 370 -2137 606 194 23 0 chr1 46156393 46156522 -236037142 + L1ME2 LINE L1 5652 5783 -379 6949 123 68 15 chr1 46156522 46157604 -236036060 + Tigger3b DNA MER2_type 1 1150 -1878 2129 147 3 26 chr1 46157604 46157945 -236035719 + MER1B DNA MER1_type 1 333 -4 6949 123 68 15 chr1 46157945 46158032 -236035632 + Tigger3b DNA MER2_type 1150 1231 0 1277 213 82 3 chr1 46158032 46158337 -236035327 + L1ME2 LINE L1 5782 6110 -54 1620 89 0 0 chr1 46158340 46158542 -236035122 - AluSg/x SINE Alu -12 300 99 460 97 0 0 chr1 46158542 46158604 -236035060 - Alu SINE Alu -246 63 2 262 213 0 33 chr1 46158604 46158665 -236034999 + L1ME3 LINE L1 6102 6160 -2 477 237 246 25 chr1 46158762 46159097 -236034567 + MLT1G1 LTR MaLR 156 595 0 241 291 12 12 chr1 46159097 46159183 -236034481 + MLT1H1-int LTR MaLR 1 86 -1285 443 276 80 53 chr1 46159230 46159255 -236034409 + MLT1H1-int LTR MaLR 253 276 -1095 2541 39 0 0 chr1 46159255 46159566 -236034098 - AluY SINE Alu 0 311 1 443 276 80 53 chr1 46159566 46159803 -236033861 + MLT1H1-int LTR MaLR 276 523 -848 1697 162 3 14 chr1 46160221 46160505 -236033159 - AluJo SINE Alu -31 281 1 226 338 0 0 chr1 46160519 46160596 -236033068 + MLT1H1-int LTR MaLR 806 882 -489 499 257 28 134 chr1 46160759 46160777 -236032887 + MLT1H1-int LTR MaLR 1028 1046 -325 2256 69 61 0 chr1 46160777 46161054 -236032610 - AluY SINE Alu -17 294 1 499 257 28 134 chr1 46161054 46161393 -236032271 + MLT1H1-int LTR MaLR 1046 1347 -24 908 204 52 21 chr1 46161417 46161668 -236031996 + MLT1H1 LTR MaLR 4 302 -293 5414 146 77 65 chr1 46161940 46162665 -236030999 + L1MCa LINE L1 34 749 -5677 1845 92 92 43 chr1 46162665 46162972 -236030692 - AluSx SINE Alu 0 312 1 5414 146 77 65 chr1 46162972 46163267 -236030397 + L1MCa LINE L1 749 1070 -5356 1698 168 36 10 chr1 46163267 46163571 -236030093 + AluJb SINE Alu 1 312 0 5414 146 77 65 chr1 46163571 46163642 -236030022 + L1MCa LINE L1 1070 1139 -5287 3444 153 66 41 chr1 46163644 46163794 -236029870 - LTR34 LTR ERV1 0 699 554 2373 97 7 0 chr1 46163794 46164102 -236029562 - AluY SINE Alu -1 310 1 3444 153 66 41 chr1 46164102 46164588 -236029076 - LTR34 LTR ERV1 -145 554 42 4393 132 127 15 chr1 46164588 46165331 -236028333 + LTR1B LTR ERV1 1 826 0 3444 153 66 41 chr1 46165331 46165375 -236028289 - LTR34 LTR ERV1 -657 42 1 3249 137 174 14 chr1 46165392 46166062 -236027602 + L1MCa LINE L1 1151 1937 -4489 1432 150 9 138 chr1 46166062 46166409 -236027255 - AluJb SINE Alu 0 302 1 3249 137 174 14 chr1 46166409 46166433 -236027231 + L1MCa LINE L1 1937 1956 -4470 2196 73 4 0 chr1 46166433 46166706 -236026958 + LTR8A LTR ERV1 1 274 -453 6083 268 75 40 chr1 46166720 46167271 -236026393 + L1 LINE L1 2481 3011 -3415 1967 151 0 22 chr1 46167271 46167588 -236026076 - AluJb SINE Alu -2 310 1 6083 268 75 40 chr1 46167588 46167744 -236025920 + L1 LINE L1 3011 3160 -3266 2224 114 0 23 chr1 46167744 46167882 -236025782 + AluSx SINE Alu 1 141 -171 2409 94 3 0 chr1 46167882 46168191 -236025473 + AluSg SINE Alu 1 310 0 2224 114 0 23 chr1 46168191 46168358 -236025306 + AluSx SINE Alu 141 299 -13 6083 268 75 40 chr1 46168358 46168614 -236025050 + L1 LINE L1 3160 3406 -3020 2239 112 0 3 chr1 46168614 46168918 -236024746 + AluSg SINE Alu 1 303 -7 6083 268 75 40 chr1 46168918 46168985 -236024679 + L1 LINE L1 3406 3469 -2957 269 26 0 26 chr1 46168985 46169024 -236024640 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 6083 268 75 40 chr1 46169024 46170056 -236023608 + L1 LINE L1 3469 4464 -1962 1684 162 30 27 chr1 46170056 46170352 -236023312 + AluJo SINE Alu 1 297 -15 6083 268 75 40 chr1 46170352 46170623 -236023041 + L1 LINE L1 4464 4724 -1702 1660 144 55 4 chr1 46170623 46170880 -236022784 + AluJo SINE Alu 1 270 -42 6083 268 75 40 chr1 46170880 46171350 -236022314 + L1 LINE L1 4724 5386 -1040 2075 228 34 17 chr1 46171523 46171992 -236021672 - L1M2 LINE L1 -6358 491 15 1754 153 0 50 chr1 46171992 46172312 -236021352 - AluJb SINE Alu -8 304 1 4682 135 12 15 chr1 46172317 46172585 -236021079 + L1MC1 LINE L1 5560 5828 -505 2412 88 0 22 chr1 46172585 46172903 -236020761 + AluY SINE Alu 1 311 0 4682 135 12 15 chr1 46172903 46173411 -236020253 + L1MC1 LINE L1 5828 6333 0 353 249 214 29 chr1 46173612 46173832 -236019832 + HAL1 LINE L1 1069 1247 -1260 2014 159 0 0 chr1 46173832 46174128 -236019536 - AluSx SINE Alu -16 296 1 353 249 214 29 chr1 46174128 46174252 -236019412 + HAL1 LINE L1 1247 1477 -1030 1678 237 78 24 chr1 46174358 46174948 -236018716 + HAL1 LINE L1 1886 2507 0 341 265 49 0 chr1 46175040 46175142 -236018522 - MIR3 SINE MIR -19 189 83 24 0 0 0 chr1 46175887 46175911 -236017753 + AT_rich Low_complexity Low_complexity 1 24 0 1784 175 7 10 chr1 46177094 46177386 -236016278 - AluJb SINE Alu -21 291 1 354 318 34 34 chr1 46177836 46177984 -236015680 - MIR SINE MIR -113 149 2 1902 161 3 13 chr1 46178002 46178313 -236015351 + AluJo SINE Alu 1 308 -4 751 291 135 25 chr1 46178513 46178877 -236014787 - L3 LINE CR1 -5 1572 1169 432 150 0 0 chr1 46179041 46179121 -236014543 + (TCCA)n Simple_repeat Simple_repeat 3 82 0 182 125 0 25 chr1 46179250 46179290 -236014374 + (CAAA)n Simple_repeat Simple_repeat 3 41 0 23 0 0 0 chr1 46179495 46179518 -236014146 + AT_rich Low_complexity Low_complexity 1 23 0 517 299 79 27 chr1 46179669 46179906 -236013758 + MIR SINE MIR 1 245 -17 2428 51 0 7 chr1 46180294 46180586 -236013078 - AluY SINE Alu -21 290 1 315 366 71 16 chr1 46181167 46181350 -236012314 - MIR3 SINE MIR -5 203 11 1239 255 130 28 chr1 46181829 46182500 -236011164 - L2 LINE L2 -7 3306 2559 1422 272 70 68 chr1 46183145 46184911 -236008753 + L1MC4a LINE L1 1182 3160 -3962 933 135 153 0 chr1 46185080 46185243 -236008421 + AluJo SINE Alu 79 266 -46 258 278 97 0 chr1 46185256 46185432 -236008232 - L1MDb LINE L1 -5051 1358 1166 4173 223 61 64 chr1 46185592 46186962 -236006702 + L1M4 LINE L1 3429 4793 -1353 1714 186 3 10 chr1 46186962 46187253 -236006411 + AluJo SINE Alu 5 293 -19 4173 223 61 64 chr1 46187253 46187662 -236006002 + L1M4 LINE L1 4793 5202 -944 3017 42 0 0 chr1 46187657 46188041 -236005623 + L1PA3 LINE L1 1657 2040 -4106 * 14495 34 1 0 chr1 46188052 46190604 -236003060 + L1PA3 LINE L1 3645 6197 0 2398 252 98 70 chr1 46190615 46191029 -236002635 + L1MC4a LINE L1 4583 4984 -1957 1442 154 62 10 chr1 46191029 46191261 -236002403 + MER33 DNA MER1_type 2 255 -2330 2357 100 0 0 chr1 46191261 46191561 -236002103 - AluSg SINE Alu -10 300 1 1442 154 62 10 chr1 46191561 46191633 -236002031 + MER33 DNA MER1_type 255 322 -2 2398 252 98 70 chr1 46191633 46192047 -236001617 + L1MC4a LINE L1 4984 5385 -1556 878 229 96 39 chr1 46192047 46192327 -236001337 + AluJo SINE Alu 3 298 -4 2398 252 98 70 chr1 46192327 46193360 -236000304 + L1MC4a LINE L1 5385 5707 -1234 252 0 0 0 chr1 46193360 46193388 -236000276 + (TG)n Simple_repeat Simple_repeat 2 29 0 2398 252 98 70 chr1 46193388 46193895 -235999769 + L1MC4a LINE L1 5707 6198 -743 917 191 0 24 chr1 46193895 46194063 -235999601 - FRAM SINE Alu -17 159 1 510 214 112 10 chr1 46194066 46194262 -235999402 + L1MC4a LINE L1 7025 7240 -1363 301 205 18 107 chr1 46194316 46194397 -235999267 + L2 LINE L2 2105 2175 -1139 675 145 262 0 chr1 46194397 46194542 -235999122 - MER5A DNA MER1_type -1 188 6 * 2067 281 89 14 chr1 46194541 46195206 -235998458 + L2 LINE L2 2172 2886 -428 2234 135 0 0 chr1 46195210 46195514 -235998150 - AluSx SINE Alu -8 304 1 5956 162 50 67 chr1 46195532 46195954 -235997710 - Charlie1a DNA MER1_type -1307 1454 1026 713 121 7 21 chr1 46195954 46196094 -235997570 + L1MA4 LINE L1 6158 6295 -5 5956 162 50 67 chr1 46196094 46196180 -235997484 - Charlie1a DNA MER1_type -1735 1026 940 2492 66 0 0 chr1 46196180 46196482 -235997182 + AluY SINE Alu 1 302 -9 13582 45 2 0 chr1 46196491 46198956 -235994708 + L1PA5 LINE L1 3673 6154 0 5956 162 50 67 chr1 46198956 46199914 -235993750 - Charlie1a DNA MER1_type -1829 932 2 23 33 0 0 chr1 46199999 46200029 -235993635 + AT_rich Low_complexity Low_complexity 1 30 0 2118 131 3 0 chr1 46200030 46200327 -235993337 + AluSx SINE Alu 1 298 -14 571 262 119 56 chr1 46200345 46200631 -235993033 + L2 LINE L2 3010 3313 0 534 308 145 21 chr1 46201114 46201501 -235992163 + L1ME4a LINE L1 5572 6006 -115 371 343 21 7 chr1 46201626 46201769 -235991895 - MIR3 SINE MIR -9 199 55 595 250 61 6 chr1 46201782 46201946 -235991718 + MIR SINE MIR 82 254 -8 1234 133 0 0 chr1 46202893 46203059 -235990605 - FRAM SINE Alu -14 162 1 401 347 5 41 chr1 46203084 46203280 -235990384 + L2 LINE L2 2566 2754 -560 191 303 76 30 chr1 46203733 46203799 -235989865 + MIR3 SINE MIR 91 159 -49 626 178 138 29 chr1 46203800 46203974 -235989690 - MIR SINE MIR -3 259 67 203 233 0 0 chr1 46204164 46204207 -235989457 + C-rich Low_complexity Low_complexity 1 43 0 227 280 76 25 chr1 46205159 46205277 -235988387 + MIR SINE MIR 103 226 -36 281 128 0 0 chr1 46205699 46205746 -235987918 + FLAM SINE Alu 87 133 0 2354 107 0 0 chr1 46205976 46206286 -235987378 - AluSg SINE Alu 0 310 1 184 398 12 0 chr1 46206302 46206385 -235987279 + L3 LINE CR1 1019 1102 -475 555 320 221 11 chr1 46206460 46206826 -235986838 + L3 LINE CR1 1132 1574 -3 1095 208 92 17 chr1 46206924 46207218 -235986446 - Charlie1 DNA MER1_type -748 2013 1698 444 276 94 8 chr1 46207218 46207345 -235986319 - MIR SINE MIR -123 139 2 2097 129 0 32 chr1 46208555 46208864 -235984800 - AluSx SINE Alu -13 299 1 904 97 19 13 chr1 46209897 46210052 -235983612 + L1MA4 LINE L1 6144 6299 -1 2147 118 3 30 chr1 46210382 46210686 -235982978 - AluSq SINE Alu -17 296 1 421 301 98 53 chr1 46211080 46211300 -235982364 + L2 LINE L2 2510 2719 -595 2462 77 0 0 chr1 46211300 46211597 -235982067 - AluSx SINE Alu -15 297 1 1916 134 153 5 chr1 46211606 46211979 -235981685 + MSTA LTR MaLR 1 428 0 421 301 98 53 chr1 46211979 46212104 -235981560 + L2 LINE L2 2726 2881 -433 2337 101 0 0 chr1 46212104 46212410 -235981254 - AluSg SINE Alu -4 306 1 2461 75 0 0 chr1 46212945 46213240 -235980424 - AluSc SINE Alu -14 295 1 29 0 0 0 chr1 46213683 46213712 -235979952 + AT_rich Low_complexity Low_complexity 1 29 0 300 271 205 33 chr1 46214239 46214390 -235979274 - MIR3 SINE MIR -13 195 19 238 261 54 45 chr1 46214589 46214700 -235978964 + MIR SINE MIR 96 207 -55 187 226 38 0 chr1 46215614 46215667 -235977997 + L2 LINE L2 2555 2609 -705 4110 164 57 3 chr1 46215718 46216602 -235977062 - L1MB7 LINE L1 0 6184 5254 894 264 50 121 chr1 46216603 46216771 -235976893 + L2 LINE L2 2686 2864 -449 2193 110 0 3 chr1 46216771 46217063 -235976601 - AluSx SINE Alu -21 291 1 894 264 50 121 chr1 46217063 46217299 -235976365 + L2 LINE L2 2864 3034 -279 600 242 6 0 chr1 46217299 46217456 -235976208 + L1MA10 LINE L1 6177 6334 0 894 264 50 121 chr1 46217456 46217718 -235975946 + L2 LINE L2 3034 3313 0 232 104 0 78 chr1 46217968 46218045 -235975619 + (TATAA)n Simple_repeat Simple_repeat 2 72 0 624 302 73 25 chr1 46218056 46218301 -235975363 - MIR SINE MIR -4 258 2 27 73 0 0 chr1 46219077 46219132 -235974532 + AT_rich Low_complexity Low_complexity 1 55 0 643 282 59 42 chr1 46219302 46219728 -235973936 - L1ME3A LINE L1 -224 5946 5514 597 229 105 23 chr1 46219778 46220084 -235973580 - L1ME3A LINE L1 -1329 4817 4487 198 0 0 0 chr1 46220084 46220106 -235973558 + (TC)n Simple_repeat Simple_repeat 1 22 0 2047 132 0 10 chr1 46220106 46220402 -235973262 - AluSx SINE Alu -19 293 1 22 56 0 0 chr1 46220523 46220559 -235973105 + AT_rich Low_complexity Low_complexity 1 36 0 304 287 14 34 chr1 46220645 46220854 -235972810 - L1ME3A LINE L1 -3557 2589 2385 1387 176 0 8 chr1 46220859 46221097 -235972567 - AluJo SINE Alu -11 301 66 25 31 0 0 chr1 46221206 46221238 -235972426 + AT_rich Low_complexity Low_complexity 1 32 0 265 162 88 0 chr1 46221267 46221335 -235972329 - L1ME3A LINE L1 -3863 2283 2210 544 274 39 7 chr1 46221801 46221954 -235971710 + MIR SINE MIR 50 207 -55 8151 38 33 1 chr1 46222489 46223172 -235970492 + LTR13 LTR ERVK 1 726 -281 212 0 36 0 chr1 46223172 46223200 -235970464 + (TC)n Simple_repeat Simple_repeat 2 30 0 8151 38 33 1 chr1 46223200 46223492 -235970172 + LTR13 LTR ERVK 726 1007 0 360 329 37 12 chr1 46223542 46223706 -235969958 - MIR3 SINE MIR -1 207 40 219 281 62 107 chr1 46224028 46224206 -235969458 - MIR3 SINE MIR -35 173 4 721 241 97 32 chr1 46224340 46224556 -235969108 - MIR SINE MIR -15 247 18 183 42 0 0 chr1 46224861 46224885 -235968779 + (A)n Simple_repeat Simple_repeat 1 24 0 229 274 134 78 chr1 46225133 46225312 -235968352 + MLT1K LTR MaLR 366 554 -34 573 289 123 21 chr1 46225710 46225945 -235967719 - MIR SINE MIR -1 261 3 526 266 41 32 chr1 46226099 46226291 -235967373 - MIR3 SINE MIR -1 207 6 919 245 56 13 chr1 46226425 46226658 -235967006 + MIR SINE MIR 20 262 0 535 268 16 0 chr1 46226650 46226773 -235966891 - MIR SINE MIR -107 155 31 * 1598 260 176 44 chr1 46226978 46227938 -235965726 + L2 LINE L2 2104 3210 -103 362 277 84 79 chr1 46227968 46228170 -235965494 - MIR SINE MIR -12 250 48 1703 182 0 7 chr1 46228360 46228646 -235965018 + AluJo SINE Alu 1 284 -28 693 244 73 6 chr1 46228890 46229054 -235964610 - MER5B DNA MER1_type 0 178 4 259 333 8 49 chr1 46229305 46229428 -235964236 - MER5A DNA MER1_type 0 189 72 30 0 0 0 chr1 46229462 46229492 -235964172 + AT_rich Low_complexity Low_complexity 1 30 0 2207 228 102 56 chr1 46229492 46230013 -235963651 - L1MC4 LINE L1 -1 8041 7545 1508 174 47 18 chr1 46230013 46230322 -235963342 - AluJo SINE Alu 0 317 1 2207 228 102 56 chr1 46230322 46230649 -235963015 - L1MC4 LINE L1 -497 7545 7146 1827 162 0 3 chr1 46230649 46230939 -235962725 - AluJb SINE Alu -23 289 1 2207 228 102 56 chr1 46230939 46230993 -235962671 - L1MC4 LINE L1 -896 7146 7096 1739 154 4 18 chr1 46231001 46231281 -235962383 - AluJb SINE Alu -18 294 19 2314 213 147 98 chr1 46231287 46233027 -235960637 - L1MC4a LINE L1 -757 5458 4944 1175 221 35 104 chr1 46233032 46233426 -235960238 + MLT1A2 LTR MaLR 3 369 -5 283 321 21 26 chr1 46233468 46233661 -235960003 - L1MC4a LINE L1 -1312 4903 4712 2485 234 71 28 chr1 46233681 46234609 -235959055 - L1MC4a LINE L1 -4614 1782 815 2976 131 36 70 chr1 46234609 46235226 -235958438 - L1MB3 LINE L1 -1 6182 5587 699 115 0 0 chr1 46235233 46235329 -235958335 - FLAM_A SINE Alu -32 110 15 1489 174 48 58 chr1 46235354 46236018 -235957646 - L1MB3 LINE L1 -623 5557 4915 976 194 13 44 chr1 46236058 46236285 -235957379 - L1MB7 LINE L1 -29 6155 5936 * 2816 183 80 3 chr1 46236279 46236901 -235956763 - L1MB7 LINE L1 -920 5226 4557 265 189 0 0 chr1 46236914 46236967 -235956697 - L1M4 LINE L1 -909 5306 5254 7427 74 9 0 chr1 46236983 46238749 -235954915 - L1PA6 LINE L1 -7 6147 4367 9379 71 13 2 chr1 46238749 46240023 -235953641 + L1P LINE L1 3029 4316 -1830 369 210 60 0 chr1 46240019 46240119 -235953545 - L1M4 LINE L1 -942 5273 5168 * 405 299 106 55 chr1 46240230 46240664 -235953000 - L1MDa LINE L1 -2096 4119 3664 748 231 39 48 chr1 46240667 46240708 -235952956 - MER3 DNA MER1_type -3 206 166 2586 88 11 19 chr1 46240708 46241082 -235952582 + THE1C LTR MaLR 5 375 0 748 231 39 48 chr1 46241082 46241248 -235952416 - MER3 DNA MER1_type -43 166 1 1868 181 0 7 chr1 46241364 46241668 -235951996 - AluJb SINE Alu -10 302 1 2320 98 13 0 chr1 46241789 46242094 -235951570 - AluSc SINE Alu 0 309 1 1728 189 3 13 chr1 46242196 46242503 -235951161 - AluJo SINE Alu -8 304 1 429 254 47 36 chr1 46242531 46242807 -235950857 - L1MDa LINE L1 -2991 3224 2946 222 194 0 0 chr1 46242851 46242887 -235950777 + (CA)n Simple_repeat Simple_repeat 2 37 0 1118 204 131 44 chr1 46243009 46243407 -235950257 + LTR41 LTR ERVL 347 795 0 337 232 72 48 chr1 46243585 46243710 -235949954 - HAL1b LINE L1 -935 413 286 200 111 28 0 chr1 46243823 46243859 -235949805 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 186 103 0 0 chr1 46245114 46245143 -235948521 + (CA)n Simple_repeat Simple_repeat 2 30 0 2906 251 63 69 chr1 46245203 46245718 -235947946 + L1MC5 LINE L1 6061 6578 -1383 2209 105 0 3 chr1 46245718 46246013 -235947651 - AluSc SINE Alu -15 294 1 2906 251 63 69 chr1 46246013 46246642 -235947022 + L1MC5 LINE L1 6578 7209 -752 772 236 111 0 chr1 46246642 46246841 -235946823 + MER58A DNA MER1_type 1 221 -3 2906 251 63 69 chr1 46246841 46247543 -235946121 + L1MC5 LINE L1 7209 7911 -50 1364 211 129 51 chr1 46249078 46249529 -235944135 - L1ME2 LINE L1 -80 6084 5599 * 4349 193 49 55 chr1 46249526 46251100 -235942564 - L1MB7 LINE L1 -28 6156 4606 5979 136 107 15 chr1 46251100 46252226 -235941438 + Tigger3b DNA MER2_type 2 1230 -1 4349 193 49 55 chr1 46252226 46252911 -235940753 - L1MB7 LINE L1 -1578 4606 3919 1037 199 144 82 chr1 46252913 46253482 -235940182 - L1MDa LINE L1 -3447 2768 2169 6096 233 83 29 chr1 46253486 46254203 -235939461 - L1MDa LINE L1 -4317 2079 1402 2070 113 0 3 chr1 46254203 46254513 -235939151 - AluY SINE Alu 0 309 1 6096 233 83 29 chr1 46254513 46255643 -235938021 - L1MDa LINE L1 -4994 1402 118 2024 128 0 0 chr1 46255643 46255948 -235937716 + AluSx SINE Alu 1 305 0 6096 233 83 29 chr1 46255948 46256036 -235937628 - L1MDa LINE L1 -6278 118 36 2522 68 0 3 chr1 46256077 46256385 -235937279 + AluY SINE Alu 1 307 -4 965 180 77 0 chr1 46258626 46258820 -235934844 + MER3 DNA MER1_type 1 209 0 896 246 18 14 chr1 46259344 46259564 -235934100 - MER58A DNA MER1_type -3 221 1 386 275 31 15 chr1 46259604 46259734 -235933930 - MER5A DNA MER1_type -45 144 2 336 303 78 0 chr1 46259759 46259889 -235933775 + MIR SINE MIR 32 175 -62 335 278 125 34 chr1 46259895 46260071 -235933593 - L2 LINE L2 0 3313 3122 417 274 236 19 chr1 46260267 46260530 -235933134 - L2 LINE L2 -2 3311 2992 541 203 143 15 chr1 46260727 46260860 -235932804 - L2 LINE L2 0 3313 3164 234 0 0 0 chr1 46260882 46260908 -235932756 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 243 0 0 0 chr1 46260930 46260957 -235932707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 271 264 9 100 chr1 46261028 46261122 -235932542 - L2 LINE L2 -208 3105 3021 2412 91 0 10 chr1 46261122 46261430 -235932234 + AluSx SINE Alu 1 305 -7 271 264 9 100 chr1 46261430 46261445 -235932219 - L2 LINE L2 -292 3021 3006 * 311 271 132 28 chr1 46261441 46261585 -235932079 - L3 LINE CR1 -98 1479 1321 1870 147 0 14 chr1 46261858 46262150 -235931514 - AluJb SINE Alu -13 299 12 642 193 18 0 chr1 46262260 46262374 -235931290 - FLAM_C SINE Alu -15 128 13 1186 201 14 0 chr1 46262376 46262590 -235931074 - AluJo SINE Alu -9 303 87 276 341 121 8 chr1 46262590 46262854 -235930810 - L1MC/D LINE L1 -2255 5553 5260 258 339 83 9 chr1 46263286 46263395 -235930269 + L2 LINE L2 3196 3312 -1 364 342 97 25 chr1 46263406 46263602 -235930062 + L3 LINE CR1 1024 1233 -344 447 262 106 114 chr1 46263610 46263969 -235929695 - L2 LINE L2 -3 3269 2914 377 303 83 8 chr1 46264125 46264257 -235929407 - L2 LINE L2 -620 2694 2553 207 342 130 57 chr1 46264144 46264545 -235929119 + L3 LINE CR1 1136 1565 -12 * 589 249 79 34 chr1 46264878 46265055 -235928609 - MIR SINE MIR -58 204 20 604 206 126 65 chr1 46265307 46265506 -235928158 - MIR SINE MIR -46 216 6 227 341 34 23 chr1 46266530 46266618 -235927046 - MIR SINE MIR -87 121 33 469 268 140 25 chr1 46266913 46267227 -235926437 + L1ME4a LINE L1 5573 5922 -199 391 177 25 13 chr1 46267258 46267337 -235926327 + MLT1B LTR MaLR 2 81 -309 3673 220 107 56 chr1 46267337 46268913 -235924751 + MER52A LTR ERV1 1 1749 -6 1625 158 61 27 chr1 46268899 46269229 -235924435 + MLT1B LTR MaLR 50 390 0 * 293 261 25 51 chr1 46269246 46269403 -235924261 + L1ME4a LINE L1 5963 6115 -6 1270 280 30 106 chr1 46269433 46270162 -235923502 + L2 LINE L2 950 1623 -1691 10328 167 33 23 chr1 46270166 46273148 -235920516 - L1MA6 LINE L1 0 6886 3880 8220 207 81 67 chr1 46273124 46275733 -235917931 - L1MA6 LINE L1 -4156 2577 3 * 394 365 30 15 chr1 46275704 46275967 -235917697 - L1M3d LINE L1 -5616 1037 771 * 289 246 44 113 chr1 46275968 46276171 -235917493 + L2 LINE L2 1621 1809 -1505 425 303 51 20 chr1 46276272 46276467 -235917197 + L2 LINE L2 2226 2426 -888 2772 140 44 69 chr1 46276477 46276998 -235916666 + ERVL-B1 LTR ERVL 4180 4687 -1077 1433 206 49 0 chr1 46277004 46277330 -235916334 + L1MA5 LINE L1 2662 3003 -3143 1942 130 27 3 chr1 46277332 46277624 -235916040 + AluJb SINE Alu 1 299 -13 6020 135 30 29 chr1 46277626 46279652 -235914012 + L1MA5 LINE L1 4248 6295 -5 22 0 0 0 chr1 46279682 46279704 -235913960 + AT_rich Low_complexity Low_complexity 1 22 0 4509 150 52 5 chr1 46279704 46280458 -235913206 + ERVL-B1 LTR ERVL 4964 5752 -12 2595 147 50 74 chr1 46280461 46280986 -235912678 + MLT2B1 LTR ERVL 1 512 -8 445 336 137 19 chr1 46280992 46281254 -235912410 + L2 LINE L2 2685 2977 -337 31 82 0 0 chr1 46281326 46281399 -235912265 + AT_rich Low_complexity Low_complexity 1 73 0 309 130 19 0 chr1 46281557 46281654 -235912010 + Alu SINE Alu 254 351 0 43779 44 9 0 chr1 46281687 46287785 -235905879 + L1PA4 LINE L1 1 6155 0 1665 179 27 7 chr1 46287866 46288163 -235905501 + AluJo SINE Alu 10 312 0 265 347 151 29 chr1 46288541 46288780 -235904884 + L2 LINE L2 2479 2746 -568 846 156 24 18 chr1 46289367 46289534 -235904130 + L1MB4 LINE L1 5998 6165 -15 25 0 0 0 chr1 46289538 46289563 -235904101 + AT_rich Low_complexity Low_complexity 1 25 0 501 202 84 17 chr1 46289878 46289997 -235903667 - L2 LINE L2 0 3313 3187 315 238 176 105 chr1 46290060 46290270 -235903394 + L3 LINE CR1 1342 1566 -11 1023 189 0 6 chr1 46290725 46290905 -235902759 - AluJo SINE Alu -129 183 5 469 154 0 0 chr1 46290909 46290987 -235902677 + Charlie5 DNA MER1_type 2541 2618 0 2129 93 39 0 chr1 46291059 46291338 -235902326 - AluSp SINE Alu -14 299 10 311 332 67 43 chr1 46291552 46291692 -235901972 + MIR SINE MIR 9 153 -55 1662 194 47 52 chr1 46291993 46292375 -235901289 + MLT1B LTR MaLR 1 380 -10 2189 115 10 13 chr1 46292603 46292915 -235900749 + AluSx SINE Alu 1 311 -1 310 266 47 55 chr1 46292915 46293043 -235900621 + MIR SINE MIR 87 213 -49 617 170 0 21 chr1 46293093 46293187 -235900477 + FLAM_C SINE Alu 20 111 -32 1317 152 37 41 chr1 46293192 46293435 -235900229 + AluJb SINE Alu 71 312 0 485 284 44 85 chr1 46294517 46294880 -235898784 + L1MEd LINE L1 666 1013 -5106 946 266 90 39 chr1 46294975 46295441 -235898223 + LTR16C LTR ERVL 2 491 0 1377 259 78 58 chr1 46295442 46295534 -235898130 - MLT1J LTR MaLR -43 468 379 2292 77 3 26 chr1 46295534 46295844 -235897820 + AluY SINE Alu 1 303 -8 1377 259 78 58 chr1 46295844 46296096 -235897568 - MLT1J LTR MaLR -132 379 110 2437 91 0 0 chr1 46296096 46296393 -235897271 - AluSq SINE Alu -16 297 1 1377 259 78 58 chr1 46296393 46296498 -235897166 - MLT1J LTR MaLR -401 110 9 309 288 85 20 chr1 46296551 46296789 -235896875 + L1MEd LINE L1 1127 1473 -1017 315 342 67 0 chr1 46297156 46297276 -235896388 + MIR3 SINE MIR 81 208 0 22 0 0 0 chr1 46297397 46297419 -235896245 + AT_rich Low_complexity Low_complexity 1 22 0 711 250 110 26 chr1 46297896 46298124 -235895540 - MIR SINE MIR -7 255 9 1692 113 40 0 chr1 46298178 46298426 -235895238 - Tigger2 DNA MER2_type 0 2718 2461 4928 117 14 27 chr1 46298480 46298983 -235894681 - Tigger2 DNA MER2_type -1961 757 266 1789 150 0 20 chr1 46298983 46299283 -235894381 - AluJo SINE Alu -8 304 11 4928 117 14 27 chr1 46299283 46299546 -235894118 - Tigger2 DNA MER2_type -2452 266 1 302 314 12 12 chr1 46299912 46299998 -235893666 - L2 LINE L2 -190 3082 2997 17920 161 24 26 chr1 46300024 46301966 -235891698 - L1PA14 LINE L1 0 7599 5653 2551 70 0 6 chr1 46301966 46302279 -235891385 + AluY SINE Alu 1 311 0 17920 161 24 26 chr1 46302279 46303971 -235889693 - L1PA14 LINE L1 -1946 5653 3958 2839 6 0 16 chr1 46303971 46304286 -235889378 + AluYa5 SINE Alu 1 310 -1 17920 161 24 26 chr1 46304286 46304605 -235889059 - L1PA14 LINE L1 -3641 3958 3640 242 209 341 0 chr1 46304605 46304696 -235888968 - FLAM_C SINE Alu -3 130 9 17920 161 24 26 chr1 46304696 46308000 -235885664 - L1PA14 LINE L1 -3959 3640 1 215 205 26 0 chr1 46308391 46308430 -235885234 + MIR SINE MIR 32 71 -137 1972 223 22 98 chr1 46308560 46308772 -235884892 + MLT1E LTR MaLR 1 227 -366 2372 76 0 3 chr1 46308772 46309074 -235884590 + AluY SINE Alu 1 301 -10 1972 223 22 98 chr1 46309074 46309485 -235884179 + MLT1E LTR MaLR 227 577 -16 2132 174 153 20 chr1 46309630 46310045 -235883619 + MLT2B1 LTR ERVL 1 484 -36 892 18 18 0 chr1 46310045 46310159 -235883505 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 2132 174 153 20 chr1 46310159 46310202 -235883462 + MLT2B1 LTR ERVL 484 520 0 383 257 125 35 chr1 46310422 46310566 -235883098 - MIR SINE MIR -72 190 34 350 317 106 14 chr1 46310900 46311042 -235882622 - MER5A DNA MER1_type 0 189 35 1096 204 14 19 chr1 46311185 46311396 -235882268 + MER63A DNA MER1_type 1 210 0 256 143 24 0 chr1 46311423 46311465 -235882199 + MIR SINE MIR 103 145 -63 395 213 28 56 chr1 46311676 46311784 -235881880 + MIR SINE MIR 88 192 -70 451 198 66 25 chr1 46312076 46312197 -235881467 - MER90 LTR ERV1 0 614 489 1341 230 24 24 chr1 46312205 46312388 -235881276 - MER90 LTR ERV1 -194 381 199 2245 110 0 10 chr1 46312388 46312717 -235880947 - AluSx SINE Alu 0 312 1 1341 230 24 24 chr1 46312717 46312912 -235880752 - MER90 LTR ERV1 -375 200 3 545 215 94 47 chr1 46312957 46313149 -235880515 - MIR SINE MIR -57 205 7 2384 88 0 0 chr1 46314120 46314417 -235879247 - AluSc SINE Alu -12 297 1 242 312 220 0 chr1 46314687 46314796 -235878868 - MIR3 SINE MIR -38 170 38 227 320 93 90 chr1 46314894 46315172 -235878492 - L2 LINE L2 -42 3230 2952 305 366 0 10 chr1 46315266 46315367 -235878297 + MIR SINE MIR 36 135 -73 1002 206 5 0 chr1 46315404 46315598 -235878066 - MER3 DNA MER1_type 0 209 15 216 0 0 0 chr1 46315598 46315622 -235878042 + (GGCTG)n Simple_repeat Simple_repeat 1 24 0 248 224 20 0 chr1 46315895 46315944 -235877720 - MIR3 SINE MIR -50 158 109 2090 130 3 0 chr1 46316220 46316539 -235877125 - AluSx SINE Alu 0 312 1 569 207 148 39 chr1 46316577 46316780 -235876884 - MIR SINE MIR -25 237 13 411 316 21 57 chr1 46316806 46316999 -235876665 - MIR3 SINE MIR -9 199 14 293 240 136 32 chr1 46317108 46317233 -235876431 + MIR SINE MIR 47 184 -78 311 282 205 6 chr1 46317662 46317818 -235875846 - MIR SINE MIR -56 206 20 914 271 68 32 chr1 46317924 46318157 -235875507 + L2 LINE L2 2560 2783 -530 805 230 99 0 chr1 46318157 46318348 -235875316 + MER63A DNA MER1_type 1 210 0 914 271 68 32 chr1 46318348 46318651 -235875013 + L2 LINE L2 2783 3109 -204 757 133 6 82 chr1 46318751 46318909 -235874755 - Charlie5 DNA MER1_type -228 2384 2239 180 0 0 0 chr1 46318934 46318954 -235874710 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 753 228 12 94 chr1 46319024 46319088 -235874576 - MIR SINE MIR -10 252 184 4139 81 8 4 chr1 46319088 46319597 -235874067 + MER9 LTR ERVK 1 511 0 753 228 12 94 chr1 46319597 46319787 -235873877 - MIR SINE MIR -78 184 19 1155 265 152 17 chr1 46319929 46320461 -235873203 + L2 LINE L2 2708 3308 -5 17163 93 33 27 chr1 46320654 46321050 -235872614 + L1HS LINE L1 12 404 -5751 353 43 0 21 chr1 46321050 46321097 -235872567 + MER9 LTR ERVK 381 426 -85 17163 93 33 27 chr1 46321097 46324019 -235869645 + L1HS LINE L1 404 6155 0 21292 61 7 3 chr1 46324033 46326391 -235867273 + L1PA6 LINE L1 2716 5090 -1064 2186 119 0 0 chr1 46326391 46326685 -235866979 - AluSg SINE Alu -16 294 1 21292 61 7 3 chr1 46326685 46327748 -235865916 + L1PA6 LINE L1 5090 6148 -6 27 0 0 0 chr1 46328383 46328410 -235865254 + AT_rich Low_complexity Low_complexity 1 27 0 284 250 0 0 chr1 46328413 46328469 -235865195 + AluJ/monomer SINE Alu 241 296 -4 1130 236 93 42 chr1 46328965 46329452 -235864212 + MER39 LTR ERV1 53 707 0 214 262 0 0 chr1 46329659 46329701 -235863963 + (CA)n Simple_repeat Simple_repeat 2 43 0 225 269 222 9 chr1 46330632 46330740 -235862924 - MIR SINE MIR -79 183 53 496 279 68 84 chr1 46330788 46331039 -235862625 + L2 LINE L2 2609 2855 -459 717 191 99 12 chr1 46332380 46332542 -235861122 - MLT1C LTR MaLR -6 461 286 4521 195 49 54 chr1 46332561 46333812 -235859852 + MLT1C-int LTR MaLR 1 1363 -8 1410 192 127 17 chr1 46333821 46334237 -235859427 + MLT1C LTR MaLR 6 467 0 378 287 0 0 chr1 46334243 46334344 -235859320 - MIR SINE MIR 0 262 162 1707 254 75 63 chr1 46334425 46335110 -235858554 + MER21B LTR ERV1 24 716 -147 2171 110 7 10 chr1 46335225 46335525 -235858139 + AluSx SINE Alu 1 299 -13 230 219 0 47 chr1 46336053 46336117 -235857547 + L2 LINE L2 3169 3229 -84 218 301 58 29 chr1 46336521 46336624 -235857040 + MIR SINE MIR 88 193 -69 1439 134 20 4 chr1 46336723 46336976 -235856688 + L1MB3 LINE L1 5887 6143 -40 638 179 0 0 chr1 46336977 46337083 -235856581 + FLAM_C SINE Alu 30 135 -8 22 35 0 0 chr1 46337090 46337119 -235856545 + AT_rich Low_complexity Low_complexity 1 29 0 2200 114 0 19 chr1 46337185 46337500 -235856164 + AluSx SINE Alu 3 311 -1 199 158 42 53 chr1 46337728 46337823 -235855841 + GA-rich Low_complexity Low_complexity 5 98 0 663 189 81 107 chr1 46338739 46339121 -235854543 + LTR37A LTR ERV1 53 424 -2 256 368 40 40 chr1 46339394 46339595 -235854069 + L2 LINE L2 2657 2857 -457 323 399 68 40 chr1 46339644 46339922 -235853742 + L2 LINE L2 2937 3222 -50 431 243 72 33 chr1 46340155 46340307 -235853357 - MIR SINE MIR -37 225 68 288 339 24 44 chr1 46340377 46340556 -235853108 - MIR SINE MIR -69 139 20 21 36 0 0 chr1 46340704 46340732 -235852932 + AT_rich Low_complexity Low_complexity 1 28 0 188 367 185 23 chr1 46340995 46341303 -235852361 - L2 LINE L2 -4 3268 2911 723 204 193 8 chr1 46341609 46341873 -235851791 + MER5C DNA MER1_type 4 316 -8 26 0 0 0 chr1 46342179 46342205 -235851459 + AT_rich Low_complexity Low_complexity 1 26 0 477 353 49 65 chr1 46342236 46342542 -235851122 - L2 LINE L2 -52 3220 2920 591 249 134 20 chr1 46342628 46342917 -235850747 + L2 LINE L2 2713 3036 -236 1901 123 46 59 chr1 46342976 46343192 -235850472 + L1MB3 LINE L1 5799 6009 -174 2000 97 153 38 chr1 46343192 46343277 -235850387 - MER83B LTR ERV1 0 378 304 2088 115 10 29 chr1 46343277 46343589 -235850075 + AluSg SINE Alu 1 306 -4 2000 97 153 38 chr1 46343589 46343842 -235849822 - MER83B LTR ERV1 -74 304 1 1901 123 46 59 chr1 46343842 46344014 -235849650 + L1MB3 LINE L1 6009 6182 -1 1226 197 148 8 chr1 46344078 46344342 -235849322 + AluSx SINE Alu 1 301 -11 429 326 17 6 chr1 46344350 46344522 -235849142 - L2 LINE L2 -579 2735 2562 1811 126 0 23 chr1 46344529 46344792 -235848872 + AluSq SINE Alu 39 295 -18 879 304 175 26 chr1 46344797 46344878 -235848786 - L2 LINE L2 0 3313 3245 3652 51 0 0 chr1 46344878 46345328 -235848336 + L1PA6 LINE L1 5703 6152 -2 879 304 175 26 chr1 46345328 46345976 -235847688 - L2 LINE L2 -68 3245 2447 1609 175 0 28 chr1 46345976 46346262 -235847402 + AluJo SINE Alu 28 305 -7 879 304 175 26 chr1 46346262 46346347 -235847317 - L2 LINE L2 -866 2447 2376 381 320 19 39 chr1 46346338 46346494 -235847170 - MER5B DNA MER1_type -25 153 1 * 2146 150 49 20 chr1 46346966 46347318 -235846346 - L1MC3 LINE L1 0 7785 7416 2077 106 7 10 chr1 46347318 46347619 -235846045 + AluSg SINE Alu 1 300 -10 2146 150 49 20 chr1 46347619 46347714 -235845950 - L1MC3 LINE L1 -369 7416 7325 421 313 62 8 chr1 46348119 46348247 -235845417 + MIR SINE MIR 20 154 -108 188 278 74 0 chr1 46348480 46348534 -235845130 + L2 LINE L2 3205 3262 -10 231 253 275 11 chr1 46348553 46348644 -235845020 + MIR SINE MIR 30 144 -64 189 268 0 0 chr1 46348650 46348691 -235844973 - L3 LINE CR1 -5 1572 1532 241 250 47 0 chr1 46348703 46348767 -235844897 - MIR SINE MIR -108 100 34 235 219 62 78 chr1 46349262 46349390 -235844274 + L2 LINE L2 1919 2044 -1270 523 235 42 0 chr1 46349413 46349532 -235844132 + MIR SINE MIR 3 126 -136 970 156 100 163 chr1 46349730 46350031 -235843633 + AluJo SINE Alu 1 282 -30 2450 66 0 25 chr1 46350033 46350351 -235843313 - AluY SINE Alu 0 311 2 966 158 0 0 chr1 46350507 46350653 -235843011 - AluJb SINE Alu -162 150 5 248 207 24 49 chr1 46350693 46350775 -235842889 + MER116 DNA Mariner 1 80 0 2028 100 15 0 chr1 46350910 46351179 -235842485 + AluSg SINE Alu 38 310 0 700 298 52 2 chr1 46351415 46351743 -235841921 - L1ME3A LINE L1 -207 5914 5575 327 362 105 46 chr1 46351778 46352082 -235841582 - L2 LINE L2 -2781 533 212 1570 123 73 26 chr1 46352192 46352494 -235841170 + MER2 DNA MER2_type 30 345 0 214 316 63 0 chr1 46352592 46352671 -235840993 - MIR SINE MIR -8 254 171 210 271 246 57 chr1 46352658 46352780 -235840884 - MIR3 SINE MIR -36 172 28 * 583 306 83 6 chr1 46353576 46353756 -235839908 - MIR SINE MIR -61 201 8 463 311 83 35 chr1 46354009 46354404 -235839260 + L2 LINE L2 493 906 -2408 271 271 34 34 chr1 46354469 46354587 -235839077 + L2 LINE L2 2397 2514 -800 23 0 0 0 chr1 46354681 46354704 -235838960 + AT_rich Low_complexity Low_complexity 1 23 0 603 355 38 64 chr1 46354742 46355195 -235838469 + L2 LINE L2 2815 3255 -17 1604 177 37 24 chr1 46355219 46355513 -235838151 - AluJo SINE Alu -14 298 1 311 279 284 44 chr1 46356474 46356858 -235836806 + L3 LINE CR1 1098 1573 -4 443 276 162 76 chr1 46357197 46358130 -235835534 - L1M2 LINE L1 -5448 1401 527 945 181 0 0 chr1 46358453 46358613 -235835051 - FRAM SINE Alu -6 160 1 1409 210 134 64 chr1 46359191 46359771 -235833893 - MLT1E3 LTR MaLR -2 622 2 2418 81 0 0 chr1 46360027 46360322 -235833342 - AluY SINE Alu -16 295 1 204 67 0 0 chr1 46360857 46360887 -235832777 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 437 265 50 123 chr1 46361059 46361319 -235832345 + L2 LINE L2 3029 3269 -3 240 309 0 15 chr1 46361680 46361748 -235831916 + L3 LINE CR1 868 934 -643 229 245 160 0 chr1 46361811 46361917 -235831747 + MIR SINE MIR 126 248 -14 722 249 50 96 chr1 46361950 46362231 -235831433 + L3 LINE CR1 1034 1301 -276 479 279 80 97 chr1 46362224 46362818 -235830846 - L2 LINE L2 -4 3268 2632 * 418 325 80 36 chr1 46362804 46363029 -235830635 + MIR SINE MIR 17 250 -12 * 304 279 0 35 chr1 46363168 46363254 -235830410 + L3 LINE CR1 1495 1577 0 2160 87 35 0 chr1 46363845 46364131 -235829533 + AluSq SINE Alu 1 296 -17 25 0 0 0 chr1 46364364 46364389 -235829275 + AT_rich Low_complexity Low_complexity 1 25 0 190 250 75 25 chr1 46364740 46364820 -235828844 - MIR3 SINE MIR -27 181 98 23 0 0 0 chr1 46365465 46365488 -235828176 + AT_rich Low_complexity Low_complexity 1 23 0 338 0 24 0 chr1 46365639 46365681 -235827983 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2249 76 10 10 chr1 46365695 46365983 -235827681 - AluY SINE Alu -23 288 1 1407 150 32 12 chr1 46366300 46366553 -235827111 - L1PA16 LINE L1 -16 6150 5893 1125 211 69 16 chr1 46366722 46367025 -235826639 + L1ME3A LINE L1 5848 6166 -4 199 347 74 32 chr1 46367702 46367797 -235825867 - L2 LINE L2 -40 3232 3134 503 241 107 75 chr1 46368021 46368208 -235825456 - MIR SINE MIR -21 241 49 6657 182 43 19 chr1 46368479 46370874 -235822790 - L1MB4 LINE L1 0 6180 3725 523 183 126 109 chr1 46370883 46371020 -235822644 + MER58A DNA MER1_type 47 189 -2231 2081 127 37 0 chr1 46371020 46371320 -235822344 - AluSp SINE Alu -2 311 1 523 183 126 109 chr1 46371320 46371357 -235822307 + MER58A DNA MER1_type 189 224 0 187 341 207 7 chr1 46372042 46372177 -235821487 - MIR SINE MIR -100 162 1 236 324 25 131 chr1 46372574 46372895 -235820769 + L2 LINE L2 2985 3271 -1 1162 198 14 5 chr1 46373082 46373299 -235820365 + MER58A DNA MER1_type 6 224 0 980 214 70 9 chr1 46373605 46373654 -235820010 - MIR SINE MIR -6 256 211 270 0 0 0 chr1 46373654 46373684 -235819980 + (TG)n Simple_repeat Simple_repeat 2 31 0 980 214 70 9 chr1 46373684 46373849 -235819815 - MIR SINE MIR -51 211 29 226 241 0 17 chr1 46374163 46374221 -235819443 + L3 LINE CR1 1237 1293 -284 21 36 0 0 chr1 46374418 46374446 -235819218 + AT_rich Low_complexity Low_complexity 1 28 0 235 339 0 0 chr1 46374549 46374614 -235819050 + L3 LINE CR1 1513 1577 0 21 36 0 0 chr1 46374802 46374830 -235818834 + AT_rich Low_complexity Low_complexity 1 28 0 1891 170 0 7 chr1 46375005 46375294 -235818370 + AluJo SINE Alu 1 287 -25 213 225 0 0 chr1 46375473 46375513 -235818151 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1346 296 88 61 chr1 46375577 46376120 -235817544 - L3 LINE CR1 -13 1564 1007 2200 111 0 6 chr1 46376728 46377043 -235816621 + AluSq SINE Alu 1 313 0 191 288 34 17 chr1 46377319 46377378 -235816286 + MIR SINE MIR 203 262 0 847 155 39 11 chr1 46377601 46377782 -235815882 - MER3 DNA MER1_type 0 209 24 2012 73 14 42 chr1 46377786 46378072 -235815592 + AluSp SINE Alu 36 313 0 2750 166 4 17 chr1 46378072 46378589 -235815075 + THE1-int LTR MaLR 488 997 -583 213 175 0 0 chr1 46378645 46378685 -235814979 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 439 262 110 21 chr1 46379185 46379376 -235814288 - MLT1K LTR MaLR -7 581 374 487 267 114 23 chr1 46379421 46379597 -235814067 - MLT1K LTR MaLR -395 193 2 2566 59 0 0 chr1 46379675 46379978 -235813686 - AluY SINE Alu -8 303 1 190 316 51 10 chr1 46380508 46380606 -235813058 + MIR SINE MIR 34 135 -127 363 241 271 8 chr1 46380715 46380848 -235812816 + MIR SINE MIR 74 241 -21 259 132 0 0 chr1 46381044 46381082 -235812582 - Alu SINE Alu -264 38 1 335 294 129 12 chr1 46381387 46381557 -235812107 + MIR3 SINE MIR 16 205 -3 246 254 151 38 chr1 46381690 46381864 -235811800 - MIR3 SINE MIR -56 152 8 870 203 0 0 chr1 46381933 46382091 -235811573 + FRAM SINE Alu 1 158 -18 2210 90 13 10 chr1 46382132 46382443 -235811221 + AluSx SINE Alu 1 312 0 236 91 23 0 chr1 46382813 46382857 -235810807 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 187 277 12 0 chr1 46384377 46384441 -235809223 + MIR SINE MIR 25 92 -116 207 318 119 8 chr1 46385429 46385555 -235808109 + MIR SINE MIR 103 242 -20 2075 109 0 22 chr1 46386643 46386954 -235806710 - AluSx SINE Alu -8 304 1 1859 145 0 23 chr1 46386956 46387260 -235806404 - AluJb SINE Alu -15 297 1 352 302 103 0 chr1 46387265 46387381 -235806283 - MIR SINE MIR -120 142 15 448 289 94 20 chr1 46387988 46388189 -235805475 + MIR SINE MIR 47 262 0 751 276 235 8 chr1 46388555 46388823 -235804841 + LTR16A LTR ERVL 73 401 -56 1025 136 19 0 chr1 46388823 46388999 -235804665 - AluSp SINE Alu 0 313 142 261 254 17 0 chr1 46388999 46389058 -235804606 + LTR16A LTR ERVL 391 450 0 1083 224 100 54 chr1 46389623 46390049 -235803615 - LTR27 LTR ERV1 0 636 202 882 190 11 17 chr1 46390025 46390204 -235803460 - LTR28 LTR ERV1 -842 178 1 * 1826 253 78 67 chr1 46390207 46390852 -235802812 + HERV16 LTR ERVL 572 1223 -3773 9567 184 18 23 chr1 46440924 46441785 -235751879 + L1PA14 LINE L1 3317 4181 -1980 2443 82 0 13 chr1 46441785 46442100 -235751564 - AluY SINE Alu 0 311 1 9567 184 18 23 chr1 46442100 46444042 -235749622 + L1PA14 LINE L1 4181 6161 0 276 314 12 12 chr1 46444068 46444154 -235749510 + L2 LINE L2 2997 3082 -190 4893 117 14 27 chr1 46444520 46444783 -235748881 + Tigger2 DNA MER2_type 1 266 -2452 1805 150 0 20 chr1 46444783 46445083 -235748581 + AluJo SINE Alu 11 304 -8 4893 117 14 27 chr1 46445083 46445586 -235748078 + Tigger2 DNA MER2_type 266 757 -1961 1680 113 40 0 chr1 46445640 46445888 -235747776 + Tigger2 DNA MER2_type 2461 2718 0 653 233 123 7 chr1 46445965 46446170 -235747494 + MIR SINE MIR 30 255 -7 541 283 100 43 chr1 46446748 46447376 -235746288 + L1 LINE L1 2547 3210 -2936 1075 292 114 15 chr1 46447611 46448077 -235745587 + MLT1K LTR MaLR 2 513 -75 300 328 39 53 chr1 46448097 46448381 -235745283 + L1 LINE L1 3631 3910 -2236 1328 222 69 32 chr1 46448428 46448806 -235744858 + MLT2C1 LTR ERVL 4 395 -2 1931 140 125 55 chr1 46448920 46449279 -235744385 - MSTA LTR MaLR 0 428 37 2775 98 16 0 chr1 46449279 46449647 -235744017 + THE1C LTR MaLR 1 374 -1 1931 140 125 55 chr1 46449647 46449687 -235743977 - MSTA LTR MaLR -391 37 1 1156 199 71 31 chr1 46449725 46450148 -235743516 + MLT1D LTR MaLR 10 505 0 684 292 64 19 chr1 46450148 46450495 -235743169 - L2 LINE L2 -278 3035 2678 1591 247 84 11 chr1 46450502 46450883 -235742781 + MER69 DNA AcHobo 3 411 -815 1537 174 41 72 chr1 46450883 46451182 -235742482 + MER69 DNA AcHobo 1920 2202 -324 2217 118 0 16 chr1 46451182 46451488 -235742176 + AluSx SINE Alu 1 301 -11 1537 174 41 72 chr1 46451488 46451630 -235742034 + MER69 DNA AcHobo 2202 2347 -179 2157 107 45 0 chr1 46451942 46452231 -235741433 - AluSg SINE Alu -8 302 1 233 242 0 0 chr1 46452359 46452425 -235741239 - L1M4c LINE L1 -3951 2433 2368 362 282 68 6 chr1 46452812 46452975 -235740689 - HAL1 LINE L1 -763 1744 1572 29 0 0 0 chr1 46453120 46453149 -235740515 + AT_rich Low_complexity Low_complexity 1 29 0 350 304 144 32 chr1 46453203 46453542 -235740122 - HAL1 LINE L1 -1320 1187 811 685 214 108 74 chr1 46453853 46454337 -235739327 - MLT1H1 LTR MaLR 0 550 29 226 291 0 25 chr1 46455069 46455148 -235738516 - MIR SINE MIR -115 93 17 270 0 0 0 chr1 46455837 46455867 -235737797 + (CA)n Simple_repeat Simple_repeat 2 31 0 559 323 107 18 chr1 46456602 46456930 -235736734 + L3 LINE CR1 1213 1569 -8 2881 137 17 20 chr1 46457514 46457974 -235735690 - LTR32 LTR ERVL 0 471 13 1200 258 68 40 chr1 46458844 46459376 -235734288 + L2 LINE L2 1927 2473 -841 276 231 77 11 chr1 46459386 46459477 -235734187 + L2 LINE L2 2583 2679 -635 216 0 0 0 chr1 46459758 46459782 -235733882 + (A)n Simple_repeat Simple_repeat 1 24 0 212 324 169 0 chr1 46459915 46460051 -235733613 - MIR SINE MIR -70 192 34 267 277 9 54 chr1 46460121 46460233 -235733431 - MIR SINE MIR -59 149 43 228 329 0 0 chr1 46461542 46461618 -235732046 - MIR SINE MIR -114 148 73 309 333 0 0 chr1 46461966 46462080 -235731584 - MIR SINE MIR -62 146 33 2549 63 3 0 chr1 46462897 46463196 -235730468 - AluSp SINE Alu -13 300 1 229 277 15 0 chr1 46463563 46463628 -235730036 - MIR3 SINE MIR -29 179 114 235 265 46 60 chr1 46463787 46463938 -235729726 + MIR3 SINE MIR 46 194 -14 211 239 0 0 chr1 46464334 46464380 -235729284 - MIR SINE MIR -117 145 100 354 263 18 0 chr1 46464756 46464879 -235728785 + MIR SINE MIR 22 153 -55 351 305 81 61 chr1 46465289 46465584 -235728080 - L2 LINE L2 -8 3305 3005 910 124 0 0 chr1 46465589 46465710 -235727954 + FRAM SINE Alu 26 146 -30 201 74 0 0 chr1 46465738 46465765 -235727899 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 371 271 23 8 chr1 46465806 46465935 -235727729 - L2 LINE L2 -470 2844 2714 682 218 117 0 chr1 46465961 46466158 -235727506 + L1M4 LINE L1 3437 3656 -2490 723 264 11 19 chr1 46466165 46466537 -235727127 - MLT1G LTR MaLR -6 584 143 1243 156 55 9 chr1 46466545 46466785 -235726879 - AluSg/x SINE Alu 0 310 81 735 268 48 75 chr1 46466787 46467031 -235726633 - L2 LINE L2 -872 2442 2212 1463 167 72 0 chr1 46467031 46467384 -235726280 + AluJb SINE Alu 2 373 0 735 268 48 75 chr1 46467384 46467577 -235726087 - L2 LINE L2 -1102 2212 2015 525 276 94 0 chr1 46467619 46467811 -235725853 - MIR SINE MIR -5 257 48 226 274 216 0 chr1 46467894 46467996 -235725668 + MIR SINE MIR 125 248 -14 198 167 0 0 chr1 46468721 46468757 -235724907 + (TG)n Simple_repeat Simple_repeat 1 36 0 242 275 0 0 chr1 46470659 46470728 -235722936 - MIR SINE MIR -11 251 183 232 233 0 0 chr1 46471459 46471502 -235722162 + polypurine Low_complexity Low_complexity 3 45 0 927 239 36 5 chr1 46471991 46472213 -235721451 + MIR SINE MIR 34 262 0 1940 147 17 95 chr1 46472353 46472610 -235721054 - MLT1B LTR MaLR 0 390 114 2030 138 0 3 chr1 46472610 46472918 -235720746 + AluSx SINE Alu 1 307 0 1940 147 17 95 chr1 46472918 46473047 -235720617 - MLT1B LTR MaLR -276 114 34 2397 100 0 13 chr1 46473047 46473358 -235720306 + AluSx SINE Alu 1 307 -5 1940 147 17 95 chr1 46473358 46473389 -235720275 - MLT1B LTR MaLR -356 34 2 306 256 85 68 chr1 46473395 46473571 -235720093 + L2 LINE L2 2920 3098 -174 347 253 69 95 chr1 46473628 46473917 -235719747 + MLT1K LTR MaLR 2 349 -239 803 264 131 47 chr1 46474037 46474221 -235719443 - L1MC4a LINE L1 -1631 6177 6010 2245 95 3 58 chr1 46474221 46474548 -235719116 + AluSc SINE Alu 1 309 0 803 264 131 47 chr1 46474548 46474852 -235718812 - L1MC4a LINE L1 -1798 6010 5648 1046 122 87 10 chr1 46474852 46475048 -235718616 + L1MB8 LINE L1 5286 5496 -688 907 197 5 13 chr1 46475048 46475255 -235718409 - MLT1A2 LTR MaLR 0 374 187 21 89 0 0 chr1 46475309 46475365 -235718299 + AT_rich Low_complexity Low_complexity 1 56 0 2886 161 14 4 chr1 46475631 46476128 -235717536 - L1MB3 LINE L1 -3 6249 5748 506 176 78 59 chr1 46476130 46476283 -235717381 - MLT1A2 LTR MaLR -213 161 6 3432 160 30 18 chr1 46476294 46476961 -235716703 + L1MB8 LINE L1 5504 6178 0 343 218 10 2 chr1 46476969 46477044 -235716620 - L1MB3 LINE L1 -462 5728 5651 262 296 139 9 chr1 46477082 46477190 -235716474 - MIR SINE MIR -120 142 21 6220 224 54 40 chr1 46477250 46478202 -235715462 - L1MB3 LINE L1 -2936 3279 2342 1889 139 66 0 chr1 46478202 46478489 -235715175 - AluSx SINE Alu -6 306 1 6220 224 54 40 chr1 46478489 46479937 -235713727 - L1MB3 LINE L1 -3873 2342 916 186 43 0 0 chr1 46479937 46479960 -235713704 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1965 126 44 4 chr1 46479962 46480232 -235713432 - AluSx SINE Alu -31 281 1 6220 224 54 40 chr1 46480232 46481031 -235712633 - L1MB3 LINE L1 -5299 916 43 267 200 71 24 chr1 46481049 46481134 -235712530 - MIR SINE MIR -72 190 102 699 247 46 21 chr1 46481158 46481352 -235712312 + MIR SINE MIR 3 201 -61 329 89 0 0 chr1 46481483 46481528 -235712136 - MLT2F LTR ERVL 0 663 619 * 538 108 12 0 chr1 46481526 46481609 -235712055 - MLT2F LTR ERVL -579 84 1 286 270 212 7 chr1 46481610 46481747 -235711917 + MIR SINE MIR 96 260 -2 185 294 35 35 chr1 46481754 46481839 -235711825 - MIR SINE MIR -165 97 13 284 319 101 0 chr1 46481845 46481964 -235711700 - L2 LINE L2 -40 3273 3143 566 268 43 0 chr1 46482085 46482249 -235711415 - MIR SINE MIR -29 233 63 525 271 109 45 chr1 46482740 46482961 -235710703 + MIR SINE MIR 28 262 0 715 279 93 8 chr1 46483163 46483400 -235710264 - L3 LINE CR1 -155 1422 1166 185 391 26 0 chr1 46483454 46483569 -235710095 - L3 LINE CR1 -402 1175 1058 325 239 0 0 chr1 46483602 46483669 -235709995 - MER33 DNA MER1_type -2 361 295 911 181 0 0 chr1 46483670 46483814 -235709850 + FRAM SINE Alu 1 137 -39 897 254 101 58 chr1 46483923 46484157 -235709507 + MLT1J LTR MaLR 128 381 -130 2344 77 3 26 chr1 46484157 46484467 -235709197 - AluY SINE Alu -8 303 1 897 254 101 58 chr1 46484467 46484559 -235709105 + MLT1J LTR MaLR 381 468 -43 951 273 88 36 chr1 46484560 46485026 -235708638 - LTR16C LTR ERVL 0 491 2 651 289 58 78 chr1 46485037 46485484 -235708180 - L1MEd LINE L1 -5016 1103 666 230 174 22 0 chr1 46486315 46486361 -235707303 + L3 LINE CR1 1373 1419 -158 392 177 13 0 chr1 46487277 46487356 -235706308 - MIR SINE MIR -63 145 66 1762 168 30 34 chr1 46487589 46488053 -235705611 - L1MD2 LINE L1 -15 6227 5800 2677 43 0 0 chr1 46488248 46488547 -235705117 + AluY SINE Alu 1 299 -12 442 294 75 0 chr1 46488754 46488914 -235704750 - MIR SINE MIR -57 205 34 353 206 214 8 chr1 46489730 46489856 -235703808 + MIR SINE MIR 14 165 -97 227 207 17 0 chr1 46490092 46490150 -235703514 + MIR SINE MIR 71 129 -79 652 244 67 5 chr1 46491024 46491232 -235702432 + MIR SINE MIR 23 243 -19 522 292 65 16 chr1 46492910 46493095 -235700569 + MIR SINE MIR 21 214 -48 932 216 5 46 chr1 46493137 46493355 -235700309 - MER63A DNA MER1_type 0 210 2 1926 166 0 25 chr1 46493425 46493707 -235699957 + AluJo SINE Alu 1 275 -71 198 0 0 0 chr1 46493707 46493729 -235699935 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1926 166 0 25 chr1 46493729 46493800 -235699864 + AluJo SINE Alu 275 346 0 186 43 0 0 chr1 46495007 46495030 -235698634 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 582 306 148 7 chr1 46495032 46495323 -235698341 - L2 LINE L2 -13 3300 2969 458 236 64 35 chr1 46495359 46495562 -235698102 - L2 LINE L2 -480 2834 2626 256 244 89 41 chr1 46496186 46496309 -235697355 + MIR SINE MIR 8 136 -126 279 298 107 0 chr1 46496516 46496647 -235697017 - MIR3 SINE MIR -19 189 45 * 297 312 9 9 chr1 46496621 46496730 -235696934 + MIR3 SINE MIR 10 118 -90 2046 104 8 4 chr1 46497127 46497426 -235696238 + AluSx SINE Alu 22 321 0 373 257 117 35 chr1 46497453 46497624 -235696040 + MIR SINE MIR 71 255 -7 221 315 94 7 chr1 46498136 46498285 -235695379 + MIR SINE MIR 16 150 -58 351 299 115 14 chr1 46498386 46498603 -235695061 - MIR SINE MIR -4 258 20 194 250 36 0 chr1 46498870 46498926 -235694738 + MIR SINE MIR 89 146 -62 292 284 12 0 chr1 46499714 46499795 -235693869 - MER33 DNA MER1_type -240 84 3 245 379 52 0 chr1 46499905 46500021 -235693643 + MIR3 SINE MIR 33 154 -54 239 306 56 19 chr1 46500606 46500714 -235692950 + MIR SINE MIR 81 192 -70 2536 71 7 0 chr1 46501095 46501404 -235692260 - AluY SINE Alu 0 311 1 241 274 75 28 chr1 46501586 46501692 -235691972 - MIR SINE MIR -71 191 81 354 284 113 58 chr1 46501907 46502234 -235691430 + L2 LINE L2 1933 2277 -1037 585 211 48 24 chr1 46502340 46502548 -235691116 + MER69 DNA AcHobo 2314 2526 0 919 236 154 46 chr1 46502602 46503056 -235690608 + LTR33A LTR ERVL 17 519 -4 2139 239 166 28 chr1 46503059 46503886 -235689778 - L2 LINE L2 -652 2662 1722 221 176 0 20 chr1 46503920 46503971 -235689693 + (CATA)n Simple_repeat Simple_repeat 3 52 0 889 253 59 27 chr1 46503972 46504337 -235689327 - L1ME3A LINE L1 -4 6166 5760 1927 131 0 4 chr1 46504337 46504611 -235689053 - AluSx SINE Alu -1 311 39 889 253 59 27 chr1 46504611 46504787 -235688877 - L1ME3A LINE L1 -410 5760 5591 9031 90 10 7 chr1 46504787 46506042 -235687622 + HSMAR1 DNA Mariner 25 1282 -5 727 256 70 13 chr1 46506043 46506273 -235687391 - L1ME3A LINE L1 -595 5569 5327 1777 270 89 11 chr1 46506273 46506839 -235686825 - L2 LINE L2 -1975 1339 716 1456 159 150 47 chr1 46506839 46506917 -235686747 - MSTD LTR MaLR 0 396 327 2148 122 7 3 chr1 46506917 46507212 -235686452 + AluSx SINE Alu 9 304 -8 1456 159 150 47 chr1 46507212 46507492 -235686172 - MSTD LTR MaLR -69 327 1 1777 270 89 11 chr1 46507492 46507565 -235686099 - L2 LINE L2 -2598 716 650 251 356 28 5 chr1 46507693 46507909 -235685755 + L1MC4a LINE L1 4883 5103 -1043 742 236 39 11 chr1 46507931 46508109 -235685555 - MIR SINE MIR -2 260 78 741 164 34 0 chr1 46508241 46508387 -235685277 - L1MA10 LINE L1 0 6334 6184 251 241 129 9 chr1 46508428 46508544 -235685120 + L1P LINE L1 5270 5399 -767 1825 153 0 0 chr1 46508545 46508800 -235684864 + AluSx SINE Alu 26 280 -32 413 255 133 127 chr1 46508826 46508949 -235684715 + L1MC4a LINE L1 5382 5503 -2305 2493 71 0 0 chr1 46508949 46509244 -235684420 + AluY SINE Alu 1 295 -16 413 255 133 127 chr1 46509244 46509586 -235684078 + L1MC4a LINE L1 5503 5850 -1958 209 283 55 76 chr1 46509780 46509962 -235683702 - L2 LINE L2 -70 3243 2996 1904 147 0 36 chr1 46509962 46510268 -235683396 + AluJo SINE Alu 5 299 -13 209 283 55 76 chr1 46510268 46510381 -235683283 - L2 LINE L2 -317 2996 2882 1840 222 44 30 chr1 46510460 46510956 -235682708 - L1ME1 LINE L1 -14 6152 5650 703 246 23 0 chr1 46511780 46511951 -235681713 + MIR SINE MIR 88 262 0 1619 214 54 14 chr1 46512185 46512611 -235681053 + LTR47B LTR ERVL 1 443 0 214 289 44 22 chr1 46512837 46512927 -235680737 - MIR SINE MIR -68 140 49 324 248 10 59 chr1 46513387 46513488 -235680176 + L2 LINE L2 3200 3295 -18 299 348 120 31 chr1 46513588 46513816 -235679848 - L2 LINE L2 -8 3264 3058 829 201 94 24 chr1 46513816 46513876 -235679788 + ORSL DNA AcHobo 1 55 -220 330 67 0 0 chr1 46513876 46513921 -235679743 + (CA)n Simple_repeat Simple_repeat 2 46 0 829 201 94 24 chr1 46513921 46513978 -235679686 + ORSL DNA AcHobo 55 107 -168 2143 131 3 0 chr1 46513978 46514268 -235679396 - AluSx SINE Alu -21 291 1 829 201 94 24 chr1 46514268 46514403 -235679261 + ORSL DNA AcHobo 107 272 -3 299 348 120 31 chr1 46514403 46514565 -235679099 - L2 LINE L2 -214 3058 2839 251 257 146 49 chr1 46515113 46515257 -235678407 - MIR SINE MIR -77 185 28 886 178 112 0 chr1 46515596 46515793 -235677871 - MER20 DNA MER1_type 0 219 1 530 253 232 53 chr1 46516539 46517032 -235676632 - L2 LINE L2 0 3313 2722 314 23 0 23 chr1 46517246 46517290 -235676374 + (CCCTAA)n Simple_repeat Simple_repeat 6 48 0 892 129 0 8 chr1 46517461 46517585 -235676079 - FLAM_C SINE Alu -20 123 1 2238 107 0 0 chr1 46517585 46517874 -235675790 - AluSx SINE Alu -23 289 1 196 297 54 14 chr1 46517945 46518019 -235675645 + MIR SINE MIR 17 93 -115 212 186 85 0 chr1 46518462 46518521 -235675143 - MIR SINE MIR -59 149 86 198 242 117 19 chr1 46518785 46518958 -235674706 + MIR3 SINE MIR 37 193 -15 253 254 84 14 chr1 46519013 46519084 -235674580 + MIR3 SINE MIR 117 192 -16 332 214 20 31 chr1 46519344 46519442 -235674222 + MARNA DNA Mariner 292 388 -198 430 320 92 15 chr1 46519478 46519711 -235673953 - MIR SINE MIR -12 250 5 345 211 41 65 chr1 46519855 46519978 -235673686 - MIR SINE MIR -63 145 26 230 257 14 14 chr1 46519999 46520069 -235673595 + MIR3 SINE MIR 91 160 -48 205 279 218 20 chr1 46520703 46520850 -235672814 + MIR SINE MIR 15 190 -72 210 330 0 0 chr1 46521440 46521546 -235672118 + (TG)n Simple_repeat Simple_repeat 2 107 0 893 248 15 0 chr1 46522114 46522312 -235671352 + MLT1E LTR MaLR 377 577 -16 1841 176 153 20 chr1 46522457 46522872 -235670792 + MLT2B1 LTR ERVL 1 484 -36 892 18 18 0 chr1 46522872 46522986 -235670678 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 1841 176 153 20 chr1 46522986 46523029 -235670635 + MLT2B1 LTR ERVL 484 520 0 367 285 111 21 chr1 46523249 46523393 -235670271 - MIR SINE MIR -72 190 34 330 317 106 14 chr1 46523727 46523869 -235669795 - MER5A DNA MER1_type 0 189 35 979 204 14 19 chr1 46524012 46524223 -235669441 + MER63A DNA MER1_type 1 210 0 248 143 24 0 chr1 46524250 46524292 -235669372 + MIR SINE MIR 103 145 -63 377 213 28 56 chr1 46524503 46524611 -235669053 + MIR SINE MIR 88 192 -70 428 273 39 0 chr1 46524903 46525031 -235668633 - MER90 LTR ERV1 0 614 482 1329 235 24 24 chr1 46525032 46525215 -235668449 - MER90 LTR ERV1 -194 381 199 2283 110 0 10 chr1 46525215 46525544 -235668120 - AluSx SINE Alu 0 312 1 1329 235 24 24 chr1 46525544 46525739 -235667925 - MER90 LTR ERV1 -375 200 3 518 226 88 41 chr1 46525784 46525976 -235667688 - MIR SINE MIR -57 205 7 2444 84 0 0 chr1 46526947 46527244 -235666420 - AluSc SINE Alu -12 297 1 225 312 220 0 chr1 46527514 46527623 -235666041 - MIR3 SINE MIR -38 170 38 283 366 0 10 chr1 46528093 46528194 -235665470 + MIR SINE MIR 36 135 -73 960 206 5 0 chr1 46528231 46528425 -235665239 - MER3 DNA MER1_type 0 209 15 216 0 0 0 chr1 46528425 46528449 -235665215 + (GGCTG)n Simple_repeat Simple_repeat 1 24 0 238 224 20 0 chr1 46528722 46528771 -235664893 - MIR3 SINE MIR -50 158 109 2139 130 3 0 chr1 46529047 46529366 -235664298 - AluSx SINE Alu 0 312 1 539 222 151 40 chr1 46529382 46529607 -235664057 - MIR SINE MIR 0 262 13 400 316 21 57 chr1 46529633 46529826 -235663838 - MIR3 SINE MIR -9 199 14 279 296 104 0 chr1 46529935 46530060 -235663604 + MIR SINE MIR 47 184 -78 305 148 37 28 chr1 46530647 46530755 -235662909 + (CA)n Simple_repeat Simple_repeat 1 109 0 471 84 56 56 chr1 46530781 46530960 -235662704 + (CA)n Simple_repeat Simple_repeat 1 179 0 194 141 65 11 chr1 46530980 46531072 -235662592 + (CA)n Simple_repeat Simple_repeat 2 98 0 231 238 89 40 chr1 46531999 46532100 -235661564 - MIR SINE MIR -96 166 61 226 270 0 22 chr1 46532762 46532851 -235660813 + C-rich Low_complexity Low_complexity 3 89 0 980 116 5 95 chr1 46533381 46533570 -235660094 + AluJo SINE Alu 85 256 -56 1742 114 71 7 chr1 46533570 46533850 -235659814 + AluSg SINE Alu 13 310 0 194 345 95 15 chr1 46533874 46534074 -235659590 + L2 LINE L2 1733 1948 -1366 516 205 8 33 chr1 46534091 46534213 -235659451 - MIR SINE MIR -80 182 64 210 333 45 0 chr1 46534365 46534431 -235659233 + MIR SINE MIR 193 261 -1 217 159 32 32 chr1 46534444 46534507 -235659157 + (CATA)n Simple_repeat Simple_repeat 4 66 0 317 276 92 8 chr1 46535334 46535510 -235658154 + MIR SINE MIR 20 254 -8 * 584 272 15 48 chr1 46535474 46535680 -235657984 - MIR SINE MIR -33 229 31 234 226 32 16 chr1 46535721 46535783 -235657881 + GA-rich Low_complexity Low_complexity 5 67 0 12169 161 20 35 chr1 46536366 46538706 -235654958 + L1PA12 LINE L1 1241 3614 -3970 248 209 341 0 chr1 46538706 46538797 -235654867 + FLAM_C SINE Alu 9 130 -3 12169 161 20 35 chr1 46538797 46539116 -235654548 + L1PA12 LINE L1 3614 3936 -3648 2735 6 0 16 chr1 46539116 46539431 -235654233 - AluYa5 SINE Alu -1 310 1 12169 161 20 35 chr1 46539431 46539798 -235653866 + L1PA12 LINE L1 3936 4302 -3282 1648 136 29 45 chr1 46541006 46541316 -235652348 - AluJo SINE Alu -7 305 1 195 291 0 0 chr1 46541499 46541554 -235652110 + MIR SINE MIR 83 137 -71 233 275 25 38 chr1 46542064 46542144 -235651520 + A-rich Low_complexity Low_complexity 4 82 0 313 335 128 48 chr1 46542144 46542496 -235651168 - L1M4c LINE L1 -4181 2203 1824 320 363 47 16 chr1 46544328 46544521 -235649143 + MIR3 SINE MIR 1 199 -9 235 270 16 16 chr1 46544608 46544671 -235648993 + MIR SINE MIR 28 90 -172 359 340 82 31 chr1 46545024 46545315 -235648349 - L2 LINE L2 -4 3268 2963 235 342 17 0 chr1 46547021 46547138 -235646526 - MIR SINE MIR -57 205 87 279 0 0 0 chr1 46547237 46547268 -235646396 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 333 136 8 chr1 46547967 46548099 -235645565 + MIR3 SINE MIR 36 184 -24 187 296 42 70 chr1 46548142 46548284 -235645380 - L2 LINE L2 -212 3060 2923 305 370 0 0 chr1 46548409 46548517 -235645147 + L2 LINE L2 3204 3311 -2 760 186 108 6 chr1 46548599 46548766 -235644898 + MER5A DNA MER1_type 1 184 -5 202 242 48 16 chr1 46548832 46548894 -235644770 - MIR3 SINE MIR -134 74 11 26 50 0 0 chr1 46549136 46549176 -235644488 + AT_rich Low_complexity Low_complexity 1 40 0 1351 239 53 102 chr1 46549299 46549867 -235643797 + MLT1F LTR MaLR 3 542 0 2052 108 7 0 chr1 46550473 46550752 -235642912 + AluSq SINE Alu 1 281 -32 288 0 0 0 chr1 46550753 46550785 -235642879 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 338 264 36 50 chr1 46551248 46551388 -235642276 - L2 LINE L2 0 3313 3176 1545 98 4 17 chr1 46551857 46552091 -235641573 - L1P4 LINE L1 -419 5749 5519 509 239 54 88 chr1 46552472 46552544 -235641120 - MIR SINE MIR -45 217 144 2166 104 0 13 chr1 46552544 46552853 -235640811 - AluSx SINE Alu -7 305 1 509 239 54 88 chr1 46552853 46552985 -235640679 - MIR SINE MIR -118 144 20 254 340 46 46 chr1 46553096 46553337 -235640327 - MIR SINE MIR 0 262 22 1779 185 30 0 chr1 46553424 46553727 -235639937 - AluJb SINE Alu 0 312 1 563 289 134 0 chr1 46554020 46554221 -235639443 - MIR SINE MIR -21 241 14 219 320 53 0 chr1 46554409 46554484 -235639180 - MIR SINE MIR -67 195 117 365 316 71 61 chr1 46555110 46555322 -235638342 - HAL1b LINE L1 -16 1332 1119 1849 132 38 7 chr1 46555576 46555865 -235637799 - AluJb SINE Alu -14 298 1 1743 194 137 43 chr1 46556179 46556614 -235637050 + MLT2B1 LTR ERVL 1 484 -36 598 65 11 11 chr1 46556614 46556707 -235636957 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1743 194 137 43 chr1 46556707 46556739 -235636925 + MLT2B1 LTR ERVL 484 512 -8 213 258 137 14 chr1 46557344 46557461 -235636203 - MIR SINE MIR -71 137 18 222 238 0 0 chr1 46557665 46557707 -235635957 - MIR SINE MIR -3 259 218 * 330 265 73 33 chr1 46557703 46557854 -235635810 + MIR SINE MIR 106 262 0 1513 173 60 3 chr1 46557862 46558145 -235635519 - AluSg SINE Alu 0 300 2 638 139 120 0 chr1 46558147 46558255 -235635409 - AluJb SINE Alu -177 135 15 * 784 100 0 0 chr1 46558254 46558354 -235635310 - AluS SINE Alu -211 101 2 213 39 0 0 chr1 46558359 46558385 -235635279 + (TTA)n Simple_repeat Simple_repeat 3 28 0 324 343 110 0 chr1 46558385 46558531 -235635133 - MIR SINE MIR -80 182 21 253 299 146 0 chr1 46559180 46559324 -235634340 + MIR SINE MIR 77 241 -21 1917 174 48 8 chr1 46559347 46559698 -235633966 - MLT1A1 LTR MaLR 0 365 1 377 229 128 0 chr1 46559751 46559860 -235633804 + MIR SINE MIR 116 238 -24 275 305 123 6 chr1 46560104 46560236 -235633428 - MIR SINE MIR -62 146 56 292 231 161 46 chr1 46560526 46560656 -235633008 - MIR3 SINE MIR -21 187 43 303 300 113 33 chr1 46560784 46560934 -235632730 - MIR SINE MIR -69 193 32 1922 203 31 61 chr1 46560964 46561441 -235632223 + MLT1C LTR MaLR 5 467 0 321 208 0 28 chr1 46561625 46561697 -235631967 - MIR3 SINE MIR -52 156 87 290 209 47 47 chr1 46561762 46561848 -235631816 + MIR SINE MIR 95 180 -82 419 314 16 0 chr1 46561859 46561983 -235631681 - L2 LINE L2 0 3313 3188 180 385 52 0 chr1 46562692 46562788 -235630876 + MIR SINE MIR 28 128 -80 343 360 124 0 chr1 46563930 46564108 -235629556 - L3 LINE CR1 -117 1460 1261 192 274 36 24 chr1 46564169 46564253 -235629411 + L2 LINE L2 2859 2943 -371 193 270 63 0 chr1 46564467 46564530 -235629134 + L2 LINE L2 3200 3266 -6 369 323 76 25 chr1 46564851 46565009 -235628655 - MIR SINE MIR -68 194 29 193 316 116 0 chr1 46565169 46565264 -235628400 - MIR SINE MIR -52 210 105 510 234 16 8 chr1 46565404 46565528 -235628136 - MIR SINE MIR -72 190 66 185 281 157 11 chr1 46567143 46567232 -235626432 - MIR SINE MIR -114 148 47 384 242 229 0 chr1 46567353 46567510 -235626154 + MIR SINE MIR 2 194 -68 227 330 72 0 chr1 46567627 46567724 -235625940 + L2 LINE L2 3168 3271 -1 512 204 152 43 chr1 46568067 46568257 -235625407 + MLT1B LTR MaLR 1 194 -171 287 217 43 0 chr1 46568307 46568376 -235625288 + MLT1B LTR MaLR 299 370 -20 187 218 109 0 chr1 46568387 46568442 -235625222 - MIR SINE MIR -159 103 43 256 257 150 18 chr1 46569253 46569366 -235624298 + MIR SINE MIR 20 147 -61 195 350 43 17 chr1 46569686 46569803 -235623861 + MIR SINE MIR 35 154 -108 2324 277 65 16 chr1 46570121 46570950 -235622714 - L2 LINE L2 -347 2967 2098 637 285 24 14 chr1 46571127 46571349 -235622315 + MIR SINE MIR 3 226 -36 228 324 0 0 chr1 46571712 46571780 -235621884 + CT-rich Low_complexity Low_complexity 6 73 0 1179 296 57 6 chr1 46572580 46573070 -235620594 - L1ME4a LINE L1 -4 6117 5603 809 252 22 14 chr1 46573097 46573319 -235620345 + MIR SINE MIR 36 259 -3 325 283 108 41 chr1 46573379 46573435 -235620229 - L1ME4a LINE L1 -2267 5541 5490 1806 151 4 0 chr1 46573435 46573743 -235619921 + AluSx SINE Alu 3 311 0 325 283 108 41 chr1 46573743 46573954 -235619710 - L1ME4a LINE L1 -2318 5490 5255 507 351 92 18 chr1 46573995 46574277 -235619387 - L1ME4a LINE L1 -963 5183 4881 27 29 0 0 chr1 46575904 46575938 -235617726 + GC_rich Low_complexity Low_complexity 1 34 0 32 81 0 0 chr1 46576068 46576142 -235617522 + GC_rich Low_complexity Low_complexity 1 74 0 27 29 0 0 chr1 46576174 46576208 -235617456 + GC_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr1 46576336 46576372 -235617292 + GC_rich Low_complexity Low_complexity 1 36 0 264 308 39 0 chr1 46577608 46577712 -235615952 - MIR SINE MIR -59 203 96 408 326 81 0 chr1 46577756 46577928 -235615736 + MIR SINE MIR 40 225 -37 561 295 125 42 chr1 46577929 46578359 -235615305 - L2 LINE L2 0 3272 2813 383 313 39 56 chr1 46578389 46578622 -235615042 - L2 LINE L2 -704 2610 2382 271 309 48 0 chr1 46579029 46579113 -235614551 + MIR SINE MIR 108 195 -67 219 133 0 0 chr1 46579517 46579562 -235614102 + (TG)n Simple_repeat Simple_repeat 2 46 0 222 37 0 0 chr1 46579637 46579664 -235614000 + (TG)n Simple_repeat Simple_repeat 1 27 0 270 213 32 0 chr1 46580243 46580337 -235613327 + CT-rich Low_complexity Low_complexity 1 97 0 228 67 0 0 chr1 46581133 46581163 -235612501 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 231 348 0 0 chr1 46581164 46581233 -235612431 - L2 LINE L2 -13 3300 3232 23 0 0 0 chr1 46582012 46582035 -235611629 + AT_rich Low_complexity Low_complexity 1 23 0 328 298 51 51 chr1 46582268 46582426 -235611238 + MIR3 SINE MIR 2 159 -49 655 221 38 6 chr1 46582977 46583135 -235610529 - MIR SINE MIR -51 211 49 380 219 65 8 chr1 46584407 46584516 -235609148 + MIR SINE MIR 63 176 -32 222 164 0 0 chr1 46585793 46585848 -235607816 + (TG)n Simple_repeat Simple_repeat 1 55 0 326 246 78 27 chr1 46586134 46586295 -235607369 - MIR SINE MIR -62 146 8 335 324 117 0 chr1 46586491 46586636 -235607028 - MIR SINE MIR -1 261 100 2201 116 0 0 chr1 46586640 46586943 -235606721 - AluSx SINE Alu -9 303 1 235 301 14 0 chr1 46587151 46587224 -235606440 - MIR SINE MIR -71 191 118 371 21 21 0 chr1 46587818 46587866 -235605798 + (GA)n Simple_repeat Simple_repeat 2 50 0 270 0 0 0 chr1 46589177 46589207 -235604457 + (TG)n Simple_repeat Simple_repeat 2 31 0 270 322 7 7 chr1 46589290 46589433 -235604231 + (CA)n Simple_repeat Simple_repeat 2 144 0 210 241 12 12 chr1 46589518 46589601 -235604063 + (CA)n Simple_repeat Simple_repeat 2 84 0 342 282 92 73 chr1 46589761 46590034 -235603630 + L2 LINE L2 2945 3222 -50 422 281 61 57 chr1 46590102 46590316 -235603348 - MIR SINE MIR -41 167 6 354 298 57 0 chr1 46590605 46590729 -235602935 - MIR SINE MIR -44 218 88 291 190 76 13 chr1 46590816 46590895 -235602769 + MLT1K LTR MaLR 174 257 -331 1752 134 37 0 chr1 46590901 46591227 -235602437 - AluSg SINE Alu 0 336 1 290 264 143 0 chr1 46591673 46591764 -235601900 + L2 LINE L2 3210 3313 0 471 275 14 50 chr1 46593614 46593734 -235599930 + MIR SINE MIR 44 156 -106 1935 221 131 8 chr1 46593734 46594222 -235599442 + MLT1H LTR MaLR 2 549 0 471 275 14 50 chr1 46594222 46594311 -235599353 + MIR SINE MIR 156 247 -15 250 234 15 175 chr1 46594448 46594508 -235599156 - MIR SINE MIR 0 262 194 190 0 32 32 chr1 46594508 46594539 -235599125 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1955 145 7 0 chr1 46594544 46594840 -235598824 - AluJb SINE Alu -14 298 1 250 234 15 175 chr1 46594840 46594910 -235598754 - MIR SINE MIR -72 190 148 860 145 8 0 chr1 46594944 46595075 -235598589 - AluJo SINE Alu -178 134 3 275 284 0 45 chr1 46595079 46595168 -235598496 - MIR SINE MIR -60 148 63 237 131 66 16 chr1 46595324 46595385 -235598279 + (CACCC)n Simple_repeat Simple_repeat 3 66 0 249 279 25 0 chr1 46596244 46596323 -235597341 + MLT1K LTR MaLR 500 580 -8 1690 176 0 34 chr1 46596514 46596837 -235596827 + AluJb SINE Alu 1 312 0 354 358 70 52 chr1 46596855 46597255 -235596409 + L2 LINE L2 2444 2850 -464 383 269 123 41 chr1 46597432 46597603 -235596061 + L2 LINE L2 3129 3313 0 207 316 13 66 chr1 46597813 46597889 -235595775 - MIR3 SINE MIR -47 161 90 336 271 208 7 chr1 46598615 46598759 -235594905 - MIR SINE MIR -70 192 20 191 336 53 23 chr1 46598869 46599000 -235594664 + MIR3 SINE MIR 20 154 -54 351 306 30 30 chr1 46600485 46600619 -235593045 - MIR3 SINE MIR -51 157 24 385 335 128 11 chr1 46600934 46601122 -235592542 + MIR SINE MIR 18 227 -35 679 267 106 0 chr1 46601953 46602133 -235591531 - MIR SINE MIR 0 262 64 279 279 193 16 chr1 46602194 46602504 -235591160 + L2 LINE L2 2753 3136 -177 649 306 93 33 chr1 46602519 46602852 -235590812 + MLT1I LTR MaLR 3 355 -54 399 255 43 0 chr1 46602912 46603006 -235590658 + L2 LINE L2 3203 3300 -13 180 0 0 0 chr1 46603006 46603026 -235590638 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 297 334 113 0 chr1 46603052 46603237 -235590427 - MIR SINE MIR -39 223 16 180 246 275 0 chr1 46603901 46603970 -235589694 + MIR3 SINE MIR 91 178 -30 507 334 149 16 chr1 46604134 46604636 -235589028 - L2 LINE L2 -2 3270 2703 1695 146 9 57 chr1 46604638 46604954 -235588710 - AluJb SINE Alu -11 301 1 2058 129 3 0 chr1 46605382 46605693 -235587971 + AluSx SINE Alu 1 312 0 472 299 180 27 chr1 46605942 46606270 -235587394 - L2 LINE L2 -1 3312 2935 374 283 75 13 chr1 46606754 46606913 -235586751 + MIR SINE MIR 46 214 -48 237 357 7 19 chr1 46607263 46607417 -235586247 + (CA)n Simple_repeat Simple_repeat 1 152 0 * 297 338 52 0 chr1 46607341 46607495 -235586169 + (CATG)n Simple_repeat Simple_repeat 3 164 0 217 254 28 28 chr1 46607675 46607746 -235585918 - MIR SINE MIR -143 119 49 213 298 202 20 chr1 46608806 46609004 -235584660 + MIR SINE MIR 9 242 -20 418 225 53 107 chr1 46609278 46609447 -235584217 - MIR SINE MIR -74 188 29 272 192 33 15 chr1 46610427 46610501 -235583163 + MIR SINE MIR 76 150 -63 277 311 89 24 chr1 46610870 46611060 -235582604 - MIR SINE MIR 0 262 8 422 301 0 0 chr1 46611174 46611277 -235582387 - MIR3 SINE MIR -21 187 85 186 222 0 0 chr1 46611642 46611678 -235581986 - L2 LINE L2 -96 3217 3182 532 245 92 10 chr1 46611714 46611910 -235581754 + L1ME3 LINE L1 5951 6162 0 220 319 71 18 chr1 46612377 46612490 -235581174 - MIR3 SINE MIR 0 208 90 462 314 120 59 chr1 46612610 46613439 -235580225 + L2 LINE L2 2334 3255 -17 447 265 103 15 chr1 46613563 46613699 -235579965 + MIR3 SINE MIR 33 180 -28 261 339 45 0 chr1 46613713 46613825 -235579839 - L2 LINE L2 -223 3049 2933 559 248 35 79 chr1 46665453 46665539 -235528125 - MIR SINE MIR -69 193 105 2380 74 3 3 chr1 46665539 46665849 -235527815 + AluY SINE Alu 1 310 -1 559 248 35 79 chr1 46665849 46665964 -235527700 - MIR SINE MIR -157 105 1 194 322 123 14 chr1 46666532 46666678 -235526986 - L2 LINE L2 -9 3263 3102 704 135 0 75 chr1 46666744 46666877 -235526787 - FLAM_A SINE Alu -7 135 13 575 283 69 0 chr1 46666887 46667046 -235526618 - MIR SINE MIR -62 200 31 856 295 188 35 chr1 46667680 46669062 -235524602 - L2 LINE L2 -33 3239 1632 268 255 20 31 chr1 46669449 46669547 -235524117 + MIR3 SINE MIR 1 97 -111 311 311 156 0 chr1 46670596 46670763 -235522901 + MIR3 SINE MIR 1 193 -15 2155 96 3 7 chr1 46670953 46671256 -235522408 + AluSc SINE Alu 1 302 -7 322 284 0 0 chr1 46671373 46671447 -235522217 + MIR SINE MIR 108 181 -81 273 197 16 16 chr1 46671547 46671608 -235522056 + MIR SINE MIR 33 93 -169 647 257 79 14 chr1 46671613 46671885 -235521779 + L2 LINE L2 2989 3313 0 473 277 196 5 chr1 46672482 46672666 -235520998 + MIR SINE MIR 36 254 -8 573 109 40 0 chr1 46672711 46672812 -235520852 - MER20 DNA MER1_type 0 219 115 192 200 0 0 chr1 46673883 46673928 -235519736 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 269 340 134 47 chr1 46673942 46674195 -235519469 - L2 LINE L2 -1 3271 2997 637 201 101 17 chr1 46674354 46674533 -235519131 - L2 LINE L2 -13 3300 3107 234 304 56 8 chr1 46676378 46676503 -235517161 - MLT1L LTR MaLR -7 608 478 670 264 95 33 chr1 46677416 46677784 -235515880 - MLT1D LTR MaLR -113 392 2 1517 158 20 56 chr1 46678319 46678476 -235515188 - AluJb SINE Alu -19 293 151 1536 100 0 0 chr1 46678476 46678676 -235514988 - AluSc SINE Alu -109 200 1 1517 158 20 56 chr1 46678676 46678822 -235514842 - AluJb SINE Alu -161 151 1 334 358 22 8 chr1 46678901 46679035 -235514629 - L1MC4a LINE L1 -1876 5932 5797 552 212 0 18 chr1 46679054 46679167 -235514497 - FRAM SINE Alu -11 165 55 1197 133 0 0 chr1 46679288 46679903 -235513761 + (CCA)n Simple_repeat Simple_repeat 1 615 0 334 265 2 17 chr1 46680033 46680129 -235513535 + MIR SINE MIR 2 95 -113 315 250 23 11 chr1 46680651 46680751 -235512913 - MIR SINE MIR -84 124 23 434 273 36 0 chr1 46681112 46681222 -235512442 - MIR SINE MIR -79 183 70 189 297 135 0 chr1 46681517 46681628 -235512036 - L2 LINE L2 -285 2987 2862 245 333 36 50 chr1 46681971 46682190 -235511474 + L2 LINE L2 2842 3057 -215 354 291 30 22 chr1 46682284 46682418 -235511246 - MIR SINE MIR -44 218 84 249 161 0 0 chr1 46682552 46682608 -235511056 - L1MB3 LINE L1 0 6183 6128 2114 104 3 7 chr1 46682611 46682909 -235510755 - AluSq SINE Alu -16 297 1 18943 59 12 5 chr1 46682917 46686258 -235507406 - L1PA6 LINE L1 0 6154 2824 813 174 8 0 chr1 46686370 46686502 -235507162 - FLAM_C SINE Alu 0 133 1 1083 280 70 20 chr1 46687017 46687477 -235506187 - MLT1K LTR MaLR 0 588 106 1913 148 6 6 chr1 46687501 46687812 -235505852 - AluJo SINE Alu -1 311 1 865 278 43 30 chr1 46688949 46689176 -235504488 + LTR16C LTR ERVL 186 419 -72 1605 160 55 87 chr1 46689176 46689577 -235504087 + MLT1B LTR MaLR 1 388 -2 865 278 43 30 chr1 46689577 46689651 -235504013 + LTR16C LTR ERVL 419 491 0 1690 279 36 0 chr1 46689653 46690179 -235503485 + L1ME3A LINE L1 5393 5937 -233 872 266 68 0 chr1 46690177 46690485 -235503179 - L1ME3A LINE L1 -17 6153 5825 * 701 229 32 11 chr1 46690486 46690698 -235502966 - L1ME3A LINE L1 -393 5777 5551 236 318 16 0 chr1 46691269 46691332 -235502332 - MIR SINE MIR -118 144 81 563 154 0 0 chr1 46691553 46691644 -235502020 - 5S rRNA rRNA -29 92 2 185 375 54 0 chr1 46691685 46691797 -235501867 - MIR3 SINE MIR -6 202 85 757 232 80 33 chr1 46692281 46692557 -235501107 - LTR16C LTR ERVL 0 491 203 226 329 102 15 chr1 46692749 46692886 -235500778 + MIR SINE MIR 102 250 -12 274 280 76 53 chr1 46693017 46693149 -235500515 - L2 LINE L2 -2 3270 3136 274 321 18 37 chr1 46694679 46694788 -235498876 - MIR SINE MIR -61 147 41 231 329 115 42 chr1 46695246 46695716 -235497948 + L1ME4a LINE L1 5456 5969 -152 1946 120 10 10 chr1 46695757 46696056 -235497608 - AluSq SINE Alu -14 299 1 236 301 105 35 chr1 46696148 46696291 -235497373 - MIR3 SINE MIR -40 168 16 633 250 73 0 chr1 46696639 46696803 -235496861 + MIR SINE MIR 2 177 -85 1825 168 14 16 chr1 46696810 46697180 -235496484 + L1MB7 LINE L1 5728 6096 -88 693 198 126 16 chr1 46697182 46697364 -235496300 + MER6B DNA MER2_type 1 202 -8 378 182 0 0 chr1 46697364 46697430 -235496234 + L1MB7 LINE L1 6100 6165 -19 1106 225 37 128 chr1 46697514 46698110 -235495554 - MER34 LTR ERV1 0 542 1 205 309 60 0 chr1 46698223 46698307 -235495357 + MIR SINE MIR 174 262 0 * 268 276 34 29 chr1 46698248 46698397 -235495267 - MIR SINE MIR -17 245 97 216 276 26 60 chr1 46698432 46698548 -235495116 + MIR SINE MIR 20 131 -131 181 204 0 23 chr1 46698869 46698913 -235494751 + MIR SINE MIR 87 129 -79 728 271 30 67 chr1 46698923 46699192 -235494472 + MIR SINE MIR 2 260 -2 352 294 92 0 chr1 46700202 46700321 -235493343 + L2 LINE L2 2930 3059 -213 729 247 95 18 chr1 46700370 46700590 -235493074 + MIR SINE MIR 22 262 0 210 276 184 0 chr1 46700610 46700686 -235492978 + L2 LINE L2 3122 3211 -61 487 330 22 6 chr1 46701223 46701402 -235492262 - MER115 DNA AcHobo -503 190 9 1743 168 0 26 chr1 46702204 46702514 -235491150 - AluJo SINE Alu -10 302 1 369 372 14 7 chr1 46702711 46702859 -235490805 - MIR SINE MIR -34 228 80 244 253 113 98 chr1 46704582 46704776 -235488888 + MIR3 SINE MIR 1 197 -11 592 293 18 49 chr1 46705007 46705232 -235488432 - MIR SINE MIR -37 225 8 463 208 164 1 chr1 46705490 46705626 -235488038 + MIR SINE MIR 3 146 -62 2236 84 3 7 chr1 46706160 46706459 -235487205 - AluSq SINE Alu -15 298 1 267 366 10 0 chr1 46706531 46706657 -235487007 - MIR SINE MIR -60 148 20 254 333 38 9 chr1 46706713 46706818 -235486846 + MIR SINE MIR 30 137 -71 213 154 0 0 chr1 46707245 46707284 -235486380 + GA-rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr1 46707743 46707765 -235485899 + (TG)n Simple_repeat Simple_repeat 2 23 0 211 237 93 108 chr1 46708148 46708287 -235485377 + MIR SINE MIR 126 262 0 343 272 70 26 chr1 46708354 46708468 -235485196 + MIR SINE MIR 67 185 -77 206 164 91 0 chr1 46709772 46709827 -235483837 + MIR SINE MIR 81 140 -68 187 298 95 24 chr1 46709936 46710020 -235483644 + MIR SINE MIR 51 140 -68 271 251 196 43 chr1 46710857 46711020 -235482644 - MIR SINE MIR -6 256 69 263 286 52 0 chr1 46712207 46712284 -235481380 - MIR3 SINE MIR -37 171 91 928 242 25 12 chr1 46713727 46713967 -235479697 - MIR SINE MIR -4 258 16 288 200 0 0 chr1 46714145 46714210 -235479454 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 806 153 6 0 chr1 46714233 46714396 -235479268 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 890 146 6 0 chr1 46714419 46714590 -235479074 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 261 281 12 0 chr1 46714617 46714699 -235478965 + (TCCA)n Simple_repeat Simple_repeat 2 84 0 186 371 24 48 chr1 46715893 46716017 -235477647 + MIR SINE MIR 61 181 -81 306 0 0 0 chr1 46716163 46716197 -235477467 + (TG)n Simple_repeat Simple_repeat 2 35 0 233 315 85 15 chr1 46716625 46716755 -235476909 + L2 LINE L2 2917 3055 -217 230 363 22 22 chr1 46716834 46716969 -235476695 + MIR3 SINE MIR 10 144 -64 407 222 67 89 chr1 46717239 46717419 -235476245 - MIR SINE MIR -1 261 86 243 221 274 11 chr1 46717511 46717606 -235476058 - MIR SINE MIR -108 154 35 193 241 96 24 chr1 46718213 46718296 -235475368 + MIR SINE MIR 56 144 -118 265 316 0 0 chr1 46718477 46718553 -235475111 + MIR SINE MIR 76 151 -111 278 300 186 0 chr1 46719133 46719303 -235474361 - MIR SINE MIR -32 230 21 185 241 86 0 chr1 46719307 46719365 -235474299 - L2 LINE L2 -6 3266 3204 635 226 23 104 chr1 46720525 46720746 -235472918 + MIR SINE MIR 29 231 -31 753 92 8 25 chr1 46722210 46722330 -235471334 - FRAM SINE Alu 0 176 59 223 295 179 0 chr1 46723073 46723168 -235470496 + MIR SINE MIR 107 218 -44 318 164 0 16 chr1 46724275 46724336 -235469328 - MIR SINE MIR -140 122 63 386 290 16 16 chr1 46724542 46724666 -235468998 - MIR SINE MIR -5 257 134 602 202 16 8 chr1 46724715 46724844 -235468820 - MIR SINE MIR -106 156 27 407 304 149 6 chr1 46725726 46725887 -235467777 + MIR SINE MIR 9 192 -70 231 36 0 0 chr1 46726573 46726601 -235467063 + (CCCG)n Simple_repeat Simple_repeat 2 29 0 268 208 0 0 chr1 46726736 46726789 -235466875 + MIR SINE MIR 87 139 -69 222 258 45 0 chr1 46726958 46727024 -235466640 + MIR SINE MIR 47 115 -147 228 254 113 0 chr1 46727030 46727101 -235466563 + MIR SINE MIR 86 164 -98 372 302 88 26 chr1 46727960 46728152 -235465512 + MIR SINE MIR 35 238 -24 581 331 39 19 chr1 46728502 46728813 -235464851 + MLT1I LTR MaLR 91 407 -2 183 347 196 9 chr1 46729163 46729480 -235464184 + L2 LINE L2 1131 1506 -1808 251 203 0 94 chr1 46729712 46729776 -235463888 - L2 LINE L2 0 3313 3256 280 287 157 0 chr1 46730047 46730162 -235463502 + L2 LINE L2 3173 3305 -8 743 214 40 17 chr1 46730237 46730410 -235463254 - MIR SINE MIR -15 247 71 1145 200 17 4 chr1 46730535 46730775 -235462889 + MLT1C LTR MaLR 225 467 0 275 260 110 0 chr1 46730848 46730948 -235462716 + MIR3 SINE MIR 81 191 -17 242 73 24 0 chr1 46731209 46731250 -235462414 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 228 67 0 0 chr1 46734436 46734466 -235459198 + (A)n Simple_repeat Simple_repeat 1 30 0 294 234 27 63 chr1 46735927 46736038 -235457626 - MIR SINE MIR -72 136 30 320 274 23 46 chr1 46736477 46736652 -235457012 + (ATGGTG)n Simple_repeat Simple_repeat 2 172 0 2430 144 65 5 chr1 46736763 46737166 -235456498 + MSTA LTR MaLR 1 427 -1 233 276 35 0 chr1 46737254 46737312 -235456352 + L2 LINE L2 3252 3311 -2 267 368 0 9 chr1 46738430 46738536 -235455128 + MIR SINE MIR 108 212 -50 698 260 60 0 chr1 46738543 46738743 -235454921 - MIR SINE MIR 0 262 51 279 0 0 0 chr1 46738761 46738792 -235454872 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 282 314 73 36 chr1 46738806 46738943 -235454721 + MIR SINE MIR 75 216 -46 500 253 218 0 chr1 46740293 46740463 -235453201 + MIR SINE MIR 42 248 -14 399 298 21 37 chr1 46741022 46741213 -235452451 + L2 LINE L2 2380 2567 -747 385 311 138 37 chr1 46741290 46741724 -235451940 + L2 LINE L2 2836 3313 0 297 322 89 14 chr1 46741884 46742030 -235451634 + MIR SINE MIR 82 238 -24 349 324 9 9 chr1 46742606 46742711 -235450953 + MIR SINE MIR 154 258 -4 249 213 21 0 chr1 46742726 46742773 -235450891 - L2 LINE L2 -3 3269 3222 277 277 0 50 chr1 46742910 46743029 -235450635 + GA-rich Low_complexity Low_complexity 5 117 0 320 301 70 80 chr1 46744350 46744636 -235449028 + L1MEd LINE L1 956 1238 -4881 248 350 0 24 chr1 46744636 46744759 -235448905 + (TGGA)n Simple_repeat Simple_repeat 3 122 0 182 352 0 0 chr1 46745399 46745453 -235448211 - MIR3 SINE MIR -10 198 145 210 296 28 0 chr1 46745568 46745639 -235448025 - MIR SINE MIR -99 109 37 614 275 73 15 chr1 46745666 46745876 -235447788 + MIR SINE MIR 17 238 -24 416 299 17 0 chr1 46746390 46746507 -235447157 + MIR SINE MIR 66 184 -78 215 259 0 0 chr1 46747222 46747280 -235446384 - MIR SINE MIR -76 132 75 222 282 0 12 chr1 46748171 46748256 -235445408 + CT-rich Low_complexity Low_complexity 1 84 0 310 306 28 0 chr1 46748749 46748857 -235444807 - MIR SINE MIR -4 258 148 346 228 15 73 chr1 46748863 46748999 -235444665 - L1ME3A LINE L1 -4 6166 6039 647 191 8 6 chr1 46748999 46749137 -235444527 - MIR SINE MIR -63 145 14 234 306 99 8 chr1 46749153 46749274 -235444390 - L2 LINE L2 -192 3080 2949 292 247 67 34 chr1 46749639 46749728 -235443936 - MIR SINE MIR -163 99 8 351 301 157 19 chr1 46749882 46750098 -235443566 - L3 LINE CR1 -30 1547 1302 395 276 276 11 chr1 46751342 46751625 -235442039 + L3 LINE CR1 1148 1505 -72 236 316 38 0 chr1 46752807 46752886 -235440778 + L2 LINE L2 3187 3268 -4 251 306 45 18 chr1 46753617 46753728 -235439936 - MIR3 SINE MIR -12 196 83 211 254 0 51 chr1 46753710 46753769 -235439895 + MIR SINE MIR 50 105 -157 * 1005 244 31 16 chr1 46753842 46754100 -235439564 + MIR SINE MIR 1 262 0 351 264 128 34 chr1 46754100 46754248 -235439416 + Charlie8 DNA MER1_type 115 276 -2141 267 319 53 47 chr1 46754571 46754740 -235438924 - L3 LINE CR1 -103 1474 1305 389 269 55 35 chr1 46754947 46755092 -235438572 + MIR SINE MIR 37 184 -78 316 283 113 0 chr1 46755679 46755785 -235437879 + MIR SINE MIR 74 191 -71 294 322 50 0 chr1 46755823 46755944 -235437720 - MIR3 SINE MIR -75 133 7 410 351 148 18 chr1 46756662 46757163 -235436501 - L2 LINE L2 -696 2618 2053 477 234 11 43 chr1 46758457 46758641 -235435023 + CT-rich Low_complexity Low_complexity 3 180 0 181 200 7 50 chr1 46758690 46758830 -235434834 + CT-rich Low_complexity Low_complexity 3 136 0 445 220 6 53 chr1 46758849 46759194 -235434470 + CT-rich Low_complexity Low_complexity 1 328 0 391 239 0 61 chr1 46759141 46759321 -235434343 + C-rich Low_complexity Low_complexity 4 172 0 * 400 229 0 58 chr1 46759277 46759465 -235434199 + CT-rich Low_complexity Low_complexity 4 180 0 230 169 6 79 chr1 46759477 46759654 -235434010 + CT-rich Low_complexity Low_complexity 2 165 0 412 268 19 0 chr1 46760664 46760990 -235432674 + (TG)n Simple_repeat Simple_repeat 1 332 0 270 240 11 69 chr1 46761015 46761190 -235432474 + G-rich Low_complexity Low_complexity 6 170 0 386 319 98 12 chr1 46761929 46762145 -235431519 - MIR SINE MIR -14 248 19 552 261 139 14 chr1 46762549 46762764 -235430900 - MIR SINE MIR -13 249 8 544 291 33 0 chr1 46762992 46763143 -235430521 - L3 LINE CR1 -106 1471 1316 1110 229 23 16 chr1 46763349 46763607 -235430057 + MIR SINE MIR 2 261 -1 453 296 114 6 chr1 46763954 46764130 -235429534 - MIR3 SINE MIR -3 205 11 334 203 13 0 chr1 46764601 46764675 -235428989 + MIR SINE MIR 21 95 -113 286 321 75 0 chr1 46764735 46764869 -235428795 - L2 LINE L2 -1 3312 3169 387 290 69 14 chr1 46764905 46765050 -235428614 + MIR SINE MIR 59 211 -51 261 311 48 19 chr1 46767006 46767109 -235426555 + MIR SINE MIR 49 154 -108 599 183 44 15 chr1 46767797 46767941 -235425723 - MLT1I LTR MaLR -270 139 6 508 359 134 2 chr1 46768501 46768905 -235424759 + L2 LINE L2 2147 2603 -711 1465 315 118 8 chr1 46769762 46770189 -235423475 + L2 LINE L2 1557 2086 -1228 2094 123 40 35 chr1 46770189 46770562 -235423102 - THE1C LTR MaLR 0 375 1 1465 315 118 8 chr1 46770562 46770801 -235422863 + L2 LINE L2 2086 2297 -1017 195 218 36 18 chr1 46771180 46771235 -235422429 + MIR3 SINE MIR 100 155 -53 276 316 28 46 chr1 46775025 46775178 -235418486 - MIR SINE MIR -27 181 26 321 268 9 18 chr1 46775893 46776005 -235417659 + C-rich Low_complexity Low_complexity 1 111 0 * 508 263 6 0 chr1 46775929 46776108 -235417556 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 265 4 30 chr1 46776023 46776560 -235417104 + C-rich Low_complexity Low_complexity 1 523 0 * 2036 91 18 3 chr1 46776795 46777126 -235416538 - L1PA3 LINE L1 -229 5926 5591 226 35 0 0 chr1 46777127 46777156 -235416508 + L1P1 LINE L1 5449 5477 -678 * 17446 105 17 14 chr1 46777152 46779972 -235413692 - L1P LINE L1 -3305 2841 11 3763 162 18 28 chr1 46779982 46780746 -235412918 - L1MB3 LINE L1 -47 6136 5380 1167 253 236 3 chr1 46780946 46781656 -235412008 + L2 LINE L2 2415 3313 0 1204 300 138 32 chr1 46782376 46783304 -235410360 - L2 LINE L2 -701 2613 1588 225 0 0 0 chr1 46784139 46784164 -235409500 + (TG)n Simple_repeat Simple_repeat 2 26 0 397 252 24 132 chr1 46784171 46784421 -235409243 - HAL1 LINE L1 -5 2502 2280 3279 245 96 56 chr1 46784493 46785469 -235408195 - HAL1 LINE L1 -379 2128 1192 1843 122 0 4 chr1 46785469 46785746 -235407918 - AluSc SINE Alu 0 309 35 3279 245 96 56 chr1 46785746 46786312 -235407352 - HAL1 LINE L1 -1315 1192 650 2239 115 10 16 chr1 46786312 46786626 -235407038 - AluSx SINE Alu 0 312 1 3279 245 96 56 chr1 46786626 46787014 -235406650 - HAL1 LINE L1 -1857 650 100 723 175 6 18 chr1 46787027 46787193 -235406471 + GA-rich Low_complexity Low_complexity 2 165 0 302 291 129 25 chr1 46787456 46787628 -235406036 + MIR SINE MIR 54 252 -10 227 123 53 53 chr1 46787641 46787698 -235405966 + CT-rich Low_complexity Low_complexity 1 57 0 1879 136 7 55 chr1 46787891 46788201 -235405463 + AluJb SINE Alu 1 295 -17 216 158 347 6 chr1 46788434 46788538 -235405126 + MIR SINE MIR 19 144 -64 476 259 185 6 chr1 46789408 46789570 -235404094 + MIR SINE MIR 47 237 -25 729 303 51 17 chr1 46789674 46789908 -235403756 + MIR SINE MIR 21 262 0 283 281 42 31 chr1 46789887 46789983 -235403681 - MIR3 SINE MIR -3 205 109 * 386 202 22 0 chr1 46790292 46790381 -235403283 + L1MC4 LINE L1 7811 7901 -141 403 248 124 0 chr1 46791640 46791769 -235401895 + MIR SINE MIR 38 182 -80 249 261 189 0 chr1 46798767 46798878 -235394786 + MIR SINE MIR 34 165 -97 571 176 23 15 chr1 46800548 46800679 -235392985 + MER94 DNA DNA 2 133 -1 453 260 53 47 chr1 46800802 46800952 -235392712 - MIR3 SINE MIR -38 170 20 421 174 98 23 chr1 46803410 46803542 -235390122 + MLT1J LTR MaLR 1 142 -369 589 285 98 14 chr1 46804008 46804222 -235389442 + MIR SINE MIR 31 262 0 510 211 53 0 chr1 46805407 46805521 -235388143 + MIR3 SINE MIR 82 201 -7 609 283 100 17 chr1 46806489 46806789 -235386875 - L1MC4a LINE L1 -1976 5832 5508 2319 173 67 15 chr1 46806854 46807334 -235386330 - MLT1D LTR MaLR 0 505 1 2194 123 3 0 chr1 46807359 46807660 -235386004 - AluSx SINE Alu -10 302 1 311 218 30 40 chr1 46808024 46808125 -235385539 - L1P LINE L1 -1147 4999 4900 211 371 70 7 chr1 46808139 46808282 -235385382 - MER5A DNA MER1_type -26 163 12 3275 62 81 0 chr1 46808727 46809146 -235384518 + MLT2A2 LTR ERVL 1 453 0 24 0 0 0 chr1 46809739 46809763 -235383901 + AT_rich Low_complexity Low_complexity 1 24 0 231 226 194 11 chr1 46809818 46809911 -235383753 - MIR SINE MIR -115 147 38 782 238 133 0 chr1 46810583 46810764 -235382900 - MIR SINE MIR -19 243 39 1344 219 40 67 chr1 46811828 46811945 -235381719 + L1ME3 LINE L1 4739 4858 -1288 243 0 0 0 chr1 46811945 46811972 -235381692 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1927 164 0 4 chr1 46811974 46812255 -235381409 - AluJb SINE Alu -32 280 1 1344 219 40 67 chr1 46812255 46812659 -235381005 + L1ME3 LINE L1 4859 5249 -897 3983 176 57 19 chr1 46812710 46813844 -235379820 + L1MB2 LINE L1 4979 6164 -7 251 73 24 0 chr1 46813914 46813955 -235379709 - L1M4 LINE L1 -1076 5070 5029 * 10479 189 32 27 chr1 46813953 46816195 -235377469 - L1 LINE L1 -1074 5072 2843 2240 118 0 3 chr1 46816195 46816508 -235377156 - AluSx SINE Alu 0 312 1 2186 117 7 0 chr1 46816510 46816800 -235376864 - AluSx SINE Alu -20 292 1 10479 189 32 27 chr1 46816800 46817070 -235376594 - L1 LINE L1 -3303 2843 2544 1682 229 66 19 chr1 46817067 46817582 -235376082 + L1ME3 LINE L1 5377 5915 -247 * 816 188 47 46 chr1 46817631 46817893 -235375771 + MSTD LTR MaLR 86 391 -5 261 186 0 43 chr1 46817893 46817963 -235375701 + L1ME3 LINE L1 5910 5976 -194 1992 167 0 3 chr1 46817964 46818270 -235375394 + AluJo SINE Alu 3 307 -5 479 133 22 0 chr1 46818270 46818360 -235375304 + GA-rich Low_complexity Low_complexity 1 92 0 439 187 59 103 chr1 46818374 46818495 -235375169 + L1ME3 LINE L1 5963 6073 -89 408 88 0 0 chr1 46818495 46818552 -235375112 + (CA)n Simple_repeat Simple_repeat 2 58 0 439 187 59 103 chr1 46818552 46818633 -235375031 + L1ME3 LINE L1 6073 6156 -6 331 200 105 71 chr1 46819352 46819551 -235374113 - HAL1b LINE L1 -149 2358 763 657 265 101 116 chr1 46819907 46820127 -235373537 - HAL1 LINE L1 -938 1569 1347 798 162 7 29 chr1 46820127 46820263 -235373401 - FLAM_C SINE Alu 0 133 1 657 265 101 116 chr1 46820263 46820604 -235373060 - HAL1 LINE L1 -1160 1347 1016 353 263 124 0 chr1 46820906 46821043 -235372621 - MLT1J LTR MaLR -52 459 306 442 258 164 0 chr1 46821096 46821255 -235372409 - MLT1J LTR MaLR -313 198 14 1893 95 91 46 chr1 46821930 46822215 -235371449 + AluSq SINE Alu 1 298 -15 361 317 50 78 chr1 46822874 46822954 -235370710 + L2 LINE L2 2939 3020 -252 2030 159 46 48 chr1 46822954 46823368 -235370296 + MLT2D LTR ERVL 2 414 0 361 317 50 78 chr1 46823368 46823568 -235370096 + L2 LINE L2 3020 3211 -61 224 179 0 71 chr1 46824302 46824358 -235369306 + (TGAA)n Simple_repeat Simple_repeat 4 55 0 503 296 89 9 chr1 46824551 46824764 -235368900 - MIR SINE MIR -20 242 13 204 259 142 80 chr1 46824838 46825000 -235368664 + MIR3 SINE MIR 30 201 -7 333 218 59 20 chr1 46825630 46825731 -235367933 - MIR SINE MIR -79 183 79 283 305 180 23 chr1 46826524 46826652 -235367012 + L2 LINE L2 3125 3272 0 1302 152 14 18 chr1 46826832 46827132 -235366532 - L1MB7 LINE L1 -18 6166 5822 273 323 89 0 chr1 46828566 46828690 -235364974 - MIR3 SINE MIR -21 187 53 270 0 0 0 chr1 46828957 46828987 -235364677 + (T)n Simple_repeat Simple_repeat 1 30 0 29 47 0 0 chr1 46829045 46829088 -235364576 + AT_rich Low_complexity Low_complexity 1 43 0 214 267 33 0 chr1 46829582 46829642 -235364022 - L3 LINE CR1 -1 1576 1515 741 192 0 8 chr1 46829762 46829892 -235363772 - FLAM_A SINE Alu -2 131 3 853 269 71 8 chr1 46829982 46830220 -235363444 - MIR SINE MIR -8 254 2 325 270 130 40 chr1 46830253 46830453 -235363211 - L1MB7 LINE L1 -303 5818 5601 462 270 138 0 chr1 46830504 46830663 -235363001 - L3 LINE CR1 -229 1348 1168 382 232 61 0 chr1 46831855 46831937 -235361727 - MIR3 SINE MIR -31 177 91 437 265 262 2 chr1 46831979 46832407 -235361257 + L2 LINE L2 2473 3022 -291 224 138 138 0 chr1 46832616 46832674 -235360990 + L2 LINE L2 3169 3234 -79 201 300 50 0 chr1 46833976 46834036 -235359628 - L2 LINE L2 -4 3309 3247 241 268 36 89 chr1 46834098 46834210 -235359454 + MIR SINE MIR 31 136 -72 182 271 35 24 chr1 46834390 46834475 -235359189 - MER5A DNA MER1_type -97 92 7 1429 213 13 19 chr1 46834645 46834959 -235358705 - AluJo SINE Alu 0 312 1 829 211 83 0 chr1 46835646 46835826 -235357838 + MER58A DNA MER1_type 30 224 0 218 319 45 32 chr1 46835837 46835994 -235357670 - L2 LINE L2 -559 2755 2597 683 230 86 5 chr1 46836030 46836217 -235357447 - MIR SINE MIR -13 249 48 2426 100 3 0 chr1 46838048 46838357 -235355307 + AluSg SINE Alu 1 310 0 656 219 224 0 chr1 46838459 46838642 -235355022 - MER58A DNA MER1_type 0 224 1 1038 163 0 34 chr1 46838740 46838918 -235354746 + FRAM SINE Alu 1 163 -13 353 272 14 2 chr1 46840065 46840172 -235353492 + MIR SINE MIR 63 172 -36 402 248 28 99 chr1 46840411 46840552 -235353112 - MIR SINE MIR -85 177 47 193 194 247 32 chr1 46840934 46841027 -235352637 - MER5A DNA MER1_type -5 184 72 285 109 0 0 chr1 46841027 46841073 -235352591 + (TCCC)n Simple_repeat Simple_repeat 4 49 0 198 342 13 0 chr1 46841271 46841347 -235352317 + MER5B DNA MER1_type 57 133 -45 1773 199 112 53 chr1 46842311 46842470 -235351194 + MLT1E3 LTR MaLR 1 149 -475 5751 116 12 1 chr1 46842470 46843594 -235350070 + L1PA16 LINE L1 5029 6157 -9 1773 199 112 53 chr1 46843594 46844023 -235349641 + MLT1E3 LTR MaLR 149 624 0 403 315 108 26 chr1 46844354 46844586 -235349078 + MIR SINE MIR 2 252 -10 396 319 42 33 chr1 46844580 46844793 -235348871 - L3 LINE CR1 -479 1098 884 * 219 301 0 105 chr1 46845038 46845181 -235348483 + L2 LINE L2 2893 3020 -252 529 96 0 0 chr1 46845619 46845692 -235347972 - Alu SINE Alu -231 78 6 1836 119 0 4 chr1 46845693 46845945 -235347719 + AluSc SINE Alu 55 305 -4 916 246 117 24 chr1 46846696 46847100 -235346564 + MER110A LTR ERV1 71 491 0 1495 313 118 30 chr1 46847584 46848633 -235345031 + L1MDa LINE L1 2417 3561 -2979 246 284 0 0 chr1 46848640 46848728 -235344936 + L1MC4 LINE L1 6615 6702 -1340 233 272 0 22 chr1 46848689 46848781 -235344883 - L1MC4 LINE L1 -1339 6703 6614 * 247 293 13 60 chr1 46848741 46848891 -235344773 + L1MC4 LINE L1 6614 6756 -1286 339 326 161 17 chr1 46848905 46849135 -235344529 + L1MDa LINE L1 3655 3917 -2623 944 232 27 39 chr1 46849192 46849451 -235344213 - L2 LINE L2 -1 3312 3057 675 304 95 40 chr1 46849454 46849895 -235343769 + L1MB3 LINE L1 4968 5442 -854 2073 77 0 0 chr1 46849895 46850143 -235343521 + AluSq SINE Alu 56 303 -10 675 304 95 40 chr1 46850143 46850253 -235343411 + L1MB3 LINE L1 5442 5545 -751 333 226 30 68 chr1 46850340 46850473 -235343191 + L1PB4 LINE L1 5674 5801 -364 483 229 20 13 chr1 46850936 46851082 -235342582 + L1MB3 LINE L1 5909 6057 -117 1711 157 10 0 chr1 46851084 46851421 -235342243 + L1PB4 LINE L1 5860 6199 0 238 139 0 0 chr1 46851378 46851602 -235342062 + (GAAA)n Simple_repeat Simple_repeat 4 227 0 630 127 17 0 chr1 46851616 46851734 -235341930 + L1MB3 LINE L1 6061 6180 -3 242 271 165 53 chr1 46853492 46853625 -235340039 - MIR SINE MIR -8 254 107 211 324 78 0 chr1 46853699 46853801 -235339863 + MIR SINE MIR 81 190 -72 642 294 57 13 chr1 46854622 46854850 -235338814 + MIR SINE MIR 18 255 -7 238 302 26 52 chr1 46855153 46855269 -235338395 + L2 LINE L2 2943 3055 -217 2033 143 10 0 chr1 46856670 46856964 -235336700 - AluJb SINE Alu -14 298 2 363 343 7 0 chr1 46857101 46857238 -235336426 + MIR3 SINE MIR 46 183 -25 191 111 0 0 chr1 46857470 46857497 -235336167 + (T)n Simple_repeat Simple_repeat 1 27 0 257 308 111 0 chr1 46857504 46857621 -235336043 - MIR SINE MIR -86 176 47 409 296 48 21 chr1 46858345 46858531 -235335133 + L2 LINE L2 3122 3312 -1 336 184 122 31 chr1 46858599 46858697 -235334967 + MIR SINE MIR 45 151 -57 369 209 0 35 chr1 46858711 46858797 -235334867 + MER96 DNA MER1_type? 93 175 0 1664 195 47 70 chr1 46859522 46860035 -235333629 - MLT1D LTR MaLR -4 501 1 310 318 152 24 chr1 46861059 46861270 -235332394 - MIR SINE MIR -22 240 3 264 229 29 14 chr1 46861491 46861561 -235332103 - MIR3 SINE MIR -51 157 87 215 331 128 12 chr1 46861886 46862058 -235331606 + MIR SINE MIR 20 211 -51 285 279 82 70 chr1 46862062 46862220 -235331444 - MER5A DNA MER1_type -23 166 7 355 353 60 14 chr1 46862514 46862732 -235330932 + L3 LINE CR1 603 830 -747 368 264 0 41 chr1 46863195 46863316 -235330348 - MIR SINE MIR -10 252 137 552 277 172 26 chr1 46863571 46863829 -235329835 - L1MC4a LINE L1 -1925 5883 5664 1115 223 60 24 chr1 46863829 46863906 -235329758 - MER2 DNA MER2_type 0 344 271 2393 101 0 3 chr1 46863906 46864212 -235329452 + AluSq SINE Alu 1 305 -8 1115 223 60 24 chr1 46864212 46864466 -235329198 - MER2 DNA MER2_type -73 271 1 552 277 172 26 chr1 46864466 46864702 -235328962 - L1MC4a LINE L1 -2144 5664 5317 268 234 0 16 chr1 46864835 46864899 -235328765 - MIR SINE MIR -119 143 81 219 69 0 0 chr1 46865953 46865982 -235327682 + (TG)n Simple_repeat Simple_repeat 2 30 0 275 204 194 0 chr1 46866105 46866203 -235327461 - MER103 DNA DNA -49 117 1 198 288 34 17 chr1 46866556 46866615 -235327049 - MIR3 SINE MIR -31 177 118 261 0 0 0 chr1 46866700 46866729 -235326935 + (A)n Simple_repeat Simple_repeat 1 29 0 1344 144 87 4 chr1 46867205 46867469 -235326195 - L1MD3 LINE L1 0 7995 7710 261 333 80 25 chr1 46867593 46867755 -235325909 + MIR SINE MIR 46 216 -46 669 249 11 119 chr1 46867963 46868047 -235325617 + L2 LINE L2 2996 3087 -226 2300 124 0 0 chr1 46868047 46868354 -235325310 + AluSx SINE Alu 1 307 -5 669 249 11 119 chr1 46868354 46868623 -235325041 + L2 LINE L2 3087 3311 -2 397 292 68 6 chr1 46869018 46869179 -235324485 - MIR3 SINE MIR -2 206 36 345 335 50 3 chr1 46869419 46869626 -235324038 - MIR SINE MIR -48 214 1 338 310 9 0 chr1 46869683 46869796 -235323868 - MIR SINE MIR -83 179 66 247 301 91 14 chr1 46870415 46870558 -235323106 - MIR SINE MIR -90 172 19 190 285 120 32 chr1 46870673 46870831 -235322833 + MER5B DNA MER1_type 7 178 0 259 313 71 10 chr1 46871040 46871139 -235322525 + MIR SINE MIR 6 110 -152 191 276 0 71 chr1 46871130 46871228 -235322436 - L2 LINE L2 -8 3305 3215 * 186 378 78 5 chr1 46871254 46871447 -235322217 - MIR SINE MIR 0 262 56 190 261 123 31 chr1 46871642 46871707 -235321957 - MIR3 SINE MIR -4 204 134 702 316 93 23 chr1 46871874 46872260 -235321404 + L2 LINE L2 2884 3296 -17 245 254 16 0 chr1 46872318 46872381 -235321283 - L2 LINE L2 -3 3310 3247 242 342 0 8 chr1 46872835 46872952 -235320712 + (TG)n Simple_repeat Simple_repeat 1 116 0 199 200 154 15 chr1 46873195 46873260 -235320404 + MIR SINE MIR 22 95 -113 * 253 333 67 17 chr1 46873246 46873397 -235320267 + MIR SINE MIR 48 204 -4 492 239 14 7 chr1 46873468 46873606 -235320058 + MER103 DNA DNA 26 164 -2 26 0 0 0 chr1 46874843 46874869 -235318795 + GC_rich Low_complexity Low_complexity 1 26 0 246 116 0 0 chr1 46874906 46874949 -235318715 + (GGCTG)n Simple_repeat Simple_repeat 1 43 0 180 125 0 0 chr1 46874986 46875018 -235318646 + (CTCGG)n Simple_repeat Simple_repeat 5 36 0 22 0 0 0 chr1 46875231 46875253 -235318411 + GC_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 46875436 46875479 -235318185 + GC_rich Low_complexity Low_complexity 1 43 0 442 205 0 0 chr1 46876082 46876160 -235317504 + MER96 DNA MER1_type? 5 82 -93 297 0 0 0 chr1 46878453 46878486 -235315178 + (CA)n Simple_repeat Simple_repeat 2 34 0 375 78 0 0 chr1 46878858 46878909 -235314755 + (TG)n Simple_repeat Simple_repeat 1 51 0 366 284 52 9 chr1 46879095 46879211 -235314453 + MIR SINE MIR 14 134 -128 322 304 109 24 chr1 46879594 46879841 -235313823 + L2 LINE L2 2824 3091 -181 252 309 103 72 chr1 46880414 46880608 -235313056 + MIR SINE MIR 49 248 -14 182 289 0 0 chr1 46881619 46881664 -235312000 + MIR SINE MIR 204 248 -14 * 189 206 0 0 chr1 46881632 46881666 -235311998 + L2 LINE L2 3262 3295 -18 2335 199 9 63 chr1 46882117 46882656 -235311008 + MLT2B1 LTR ERVL 1 510 -10 231 329 25 0 chr1 46882827 46882906 -235310758 + L2 LINE L2 3233 3313 0 203 186 0 0 chr1 46883008 46883051 -235310613 - MIR SINE MIR -112 150 108 1128 281 27 52 chr1 46883176 46883578 -235310086 - L2 LINE L2 0 3313 2922 199 326 47 23 chr1 46883578 46883664 -235310000 - L2 LINE L2 -498 2816 2729 243 364 65 24 chr1 46884494 46884741 -235308923 - L2 LINE L2 -167 3105 2849 395 223 172 53 chr1 46885248 46885430 -235308234 - MIR SINE MIR -37 225 30 229 343 37 28 chr1 46886114 46886222 -235307442 - MIR SINE MIR -37 225 117 245 361 113 0 chr1 46886898 46886995 -235306669 + L2 LINE L2 3165 3272 0 228 308 33 8 chr1 46887514 46887634 -235306030 - MER103 DNA DNA -2 164 42 390 309 120 34 chr1 46887887 46888350 -235305314 + L2 LINE L2 2730 3229 -43 2289 108 7 0 chr1 46888788 46889094 -235304570 - AluSg SINE Alu -1 309 2 264 339 17 26 chr1 46889176 46889291 -235304373 + MIR SINE MIR 34 147 -61 313 254 89 146 chr1 46889381 46889874 -235303790 + MLT1K LTR MaLR 10 474 -114 328 276 0 11 chr1 46889989 46890076 -235303588 - MIR SINE MIR -19 243 158 616 284 37 9 chr1 46890120 46890332 -235303332 + MIR SINE MIR 35 256 -6 405 39 0 0 chr1 46891829 46891880 -235301784 + (TC)n Simple_repeat Simple_repeat 1 51 0 1881 178 43 51 chr1 46892002 46892178 -235301486 + MER31A LTR ERV1 1 177 -308 1619 177 113 0 chr1 46892178 46892506 -235301158 - MLT1A1 LTR MaLR 0 365 1 1881 178 43 51 chr1 46892506 46892817 -235300847 + MER31A LTR ERV1 177 484 -1 2263 112 0 13 chr1 46892935 46893248 -235300416 + AluSc SINE Alu 1 309 0 678 231 19 13 chr1 46893579 46893735 -235299929 - MIR SINE MIR -93 169 13 21 0 0 0 chr1 46893861 46893882 -235299782 + AT_rich Low_complexity Low_complexity 1 21 0 942 267 17 8 chr1 46895433 46895673 -235297991 + MIR SINE MIR 12 253 -9 272 132 0 5 chr1 46895675 46895728 -235297936 + AluSp SINE Alu 123 170 -133 1068 151 0 0 chr1 46895728 46895880 -235297784 + AluSg/x SINE Alu 141 292 -20 393 137 71 0 chr1 46895882 46896050 -235297614 + (TA)n Simple_repeat Simple_repeat 1 180 0 270 290 43 43 chr1 46896050 46896081 -235297583 - MIR SINE MIR -94 168 138 207 69 0 0 chr1 46896081 46896110 -235297554 + (CA)n Simple_repeat Simple_repeat 2 30 0 270 290 43 43 chr1 46896110 46896216 -235297448 - MIR SINE MIR -123 139 31 1311 145 4 40 chr1 46896216 46896443 -235297221 - MER20 DNA MER1_type 0 219 1 2017 157 0 10 chr1 46896659 46896971 -235296693 - AluJb SINE Alu -3 309 1 536 212 35 34 chr1 46899091 46899229 -235294435 + MIR SINE MIR 22 162 -46 458 132 99 0 chr1 46899251 46899342 -235294322 + L1PA16 LINE L1 6066 6165 -1 327 321 147 32 chr1 46899370 46899588 -235294076 + L2 LINE L2 3003 3245 -27 * 1170 219 12 12 chr1 46899567 46899818 -235293846 - MIR SINE MIR -6 256 6 204 300 218 9 chr1 46899874 46899984 -235293680 + MIR SINE MIR 75 207 -55 196 132 40 26 chr1 46900588 46900664 -235293000 + (TG)n Simple_repeat Simple_repeat 1 77 0 495 87 69 29 chr1 46900678 46900851 -235292813 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 177 79 0 chr1 46900865 46901121 -235292543 + (TG)n Simple_repeat Simple_repeat 1 276 0 2275 64 19 55 chr1 46901457 46901768 -235291896 + AluY SINE Alu 1 300 -11 841 214 40 0 chr1 46901807 46901980 -235291684 + MER3 DNA MER1_type 29 208 -1 231 195 168 17 chr1 46902285 46902359 -235291305 + MIR SINE MIR 28 112 -96 4176 223 55 19 chr1 46902359 46903064 -235290600 - MER69B DNA AcHobo -1300 1226 459 2472 97 3 0 chr1 46903064 46903373 -235290291 - AluSp SINE Alu -1 312 3 4176 223 55 19 chr1 46903373 46903845 -235289819 - MER69B DNA AcHobo -2067 459 6 343 293 71 14 chr1 46903845 46903985 -235289679 + MIR SINE MIR 102 249 -13 481 225 7 14 chr1 46903986 46904128 -235289536 + GA-rich Low_complexity Low_complexity 2 142 0 1924 147 20 0 chr1 46904129 46904421 -235289243 - AluSx SINE Alu -14 298 1 393 309 11 0 chr1 46905103 46905197 -235288467 + MIR3 SINE MIR 108 202 -6 2059 135 0 10 chr1 46905544 46905833 -235287831 + AluSx SINE Alu 6 291 -21 188 237 0 0 chr1 46907067 46907105 -235286559 - MIR SINE MIR 0 262 225 412 318 66 25 chr1 46908375 46908573 -235285091 + MIR SINE MIR 13 218 -44 865 274 12 39 chr1 46909390 46909462 -235284202 + MIR SINE MIR 15 87 -175 1662 143 75 11 chr1 46909462 46909741 -235283923 + AluJo SINE Alu 1 297 -15 865 274 12 39 chr1 46909741 46909923 -235283741 + MIR SINE MIR 87 262 0 696 173 0 23 chr1 46910926 46911147 -235282517 + GA-rich Low_complexity Low_complexity 1 216 0 221 179 0 18 chr1 46913199 46913255 -235280409 + (TAA)n Simple_repeat Simple_repeat 1 55 0 1093 212 9 23 chr1 46913270 46913487 -235280177 - MIR SINE MIR -29 233 20 689 276 79 69 chr1 46913831 46914491 -235279173 - L2 LINE L2 -72 3200 2533 190 212 24 129 chr1 46915014 46915099 -235278565 + MIR3 SINE MIR 108 183 -25 205 195 24 0 chr1 46916054 46916095 -235277569 + CT-rich Low_complexity Low_complexity 4 45 0 2469 186 32 49 chr1 46916830 46917278 -235276386 + L1ME2 LINE L1 5579 6016 -148 2817 109 35 9 chr1 46917278 46917701 -235275963 + MER57B LTR ERV1 1 434 0 2469 186 32 49 chr1 46917701 46917839 -235275825 + L1ME2 LINE L1 6016 6155 -9 952 295 23 12 chr1 46918759 46919017 -235274647 - MIR SINE MIR 0 262 2 479 323 31 0 chr1 46919266 46919396 -235274268 - L2 LINE L2 -3 3269 3136 194 233 0 0 chr1 46919464 46919507 -235274157 + L2 LINE L2 3269 3311 -2 204 319 0 55 chr1 46919545 46919636 -235274028 - L2 LINE L2 -222 3050 2965 23 0 0 0 chr1 46919856 46919879 -235273785 + AT_rich Low_complexity Low_complexity 1 23 0 866 153 23 28 chr1 46919971 46920147 -235273517 - L1MA10 LINE L1 -1 6333 6159 274 387 9 0 chr1 46920759 46920865 -235272799 + MIR SINE MIR 41 147 -61 587 288 39 39 chr1 46920873 46921102 -235272562 - MIR SINE MIR -13 249 21 256 246 121 92 chr1 46921464 46921671 -235271993 - L2 LINE L2 -3 3310 3098 * 362 280 196 30 chr1 46921663 46921999 -235271665 - L2 LINE L2 -417 2897 2506 527 168 8 64 chr1 46922357 46922482 -235271182 + MER58 DNA MER1_type 3 120 -221 234 158 0 0 chr1 46922494 46922532 -235271132 + MER58 DNA MER1_type 2383 2420 0 329 336 36 15 chr1 46925933 46926070 -235267594 - MIR3 SINE MIR -9 199 60 386 236 1 1 chr1 46926070 46926184 -235267480 - L1ME2 LINE L1 -6 6160 6046 206 314 0 14 chr1 46927261 46927331 -235266333 + G-rich Low_complexity Low_complexity 3 71 0 * 208 237 0 0 chr1 46927294 46927332 -235266332 + polypurine Low_complexity Low_complexity 3 40 0 317 366 113 11 chr1 46929767 46929953 -235263711 - L3 LINE CR1 -3 1574 1370 357 306 104 17 chr1 46929958 46930131 -235263533 + L1ME LINE L1 5333 5520 -601 253 240 13 40 chr1 46930140 46930215 -235263449 + L1ME LINE L1 5562 5634 -487 265 333 14 0 chr1 46930235 46930307 -235263357 - MIR SINE MIR -188 74 2 326 304 101 29 chr1 46930495 46930633 -235263031 - L2 LINE L2 -3 3310 3163 269 303 204 0 chr1 46930646 46930808 -235262856 - MIR SINE MIR -12 250 56 421 319 191 29 chr1 46930825 46931245 -235262419 + L2 LINE L2 2826 3313 0 270 224 51 31 chr1 46931429 46931527 -235262137 + Charlie7 DNA MER1_type 2513 2612 0 306 0 0 0 chr1 46931798 46931832 -235261832 + (GA)n Simple_repeat Simple_repeat 1 34 0 349 307 111 18 chr1 46932000 46932171 -235261493 + MIR SINE MIR 9 191 -63 538 229 64 25 chr1 46933572 46933729 -235259935 + Charlie8 DNA MER1_type 31 193 -2224 1029 129 0 7 chr1 46933774 46933914 -235259750 + AluSc SINE Alu 143 281 -28 356 130 19 0 chr1 46934017 46934071 -235259593 + Charlie8 DNA MER1_type 1360 1414 -1003 2006 29 0 0 chr1 46934255 46934500 -235259164 - L1HS LINE L1 -796 5350 5106 * 7246 2 1 0 chr1 46934499 46935291 -235258373 + L1HS LINE L1 5363 6155 0 336 148 0 0 chr1 46935650 46935711 -235257953 + (GA)n Simple_repeat Simple_repeat 1 61 0 2046 113 49 40 chr1 46936188 46936558 -235257106 + THE1C LTR MaLR 1 373 -2 2379 108 0 0 chr1 46938217 46938523 -235255141 + AluSc SINE Alu 3 308 -1 520 300 102 23 chr1 46938565 46938908 -235254756 - L2 LINE L2 0 3313 2944 216 296 51 41 chr1 46939349 46939447 -235254217 + MIR3 SINE MIR 93 191 -17 884 217 22 0 chr1 46939607 46939791 -235253873 + MER5A DNA MER1_type 1 188 -1 2223 103 14 0 chr1 46939826 46940117 -235253547 + AluSg SINE Alu 1 295 -15 245 355 46 0 chr1 46942508 46942660 -235251004 - L1ME LINE L1 -327 5794 5636 222 382 41 0 chr1 46942966 46943089 -235250575 - L2 LINE L2 -1 3271 3144 2229 120 10 0 chr1 46943725 46944026 -235249638 - AluSx SINE Alu -8 304 1 465 19 0 0 chr1 46944352 46944406 -235249258 + (TG)n Simple_repeat Simple_repeat 2 55 0 943 277 83 13 chr1 46944461 46944833 -235248831 - L2 LINE L2 0 3313 2916 254 374 17 40 chr1 46945098 46945272 -235248392 + MIR3 SINE MIR 17 186 -22 1718 57 0 26 chr1 46945822 46946050 -235247614 + L1PA4 LINE L1 5929 6150 -5 2188 109 3 10 chr1 46947709 46948003 -235245661 - AluSx SINE Alu -20 292 1 184 313 31 0 chr1 46948099 46948163 -235245501 - MIR SINE MIR -124 138 73 2070 184 58 22 chr1 46949198 46949644 -235244020 - MLT1C LTR MaLR 0 467 6 358 258 165 0 chr1 46949806 46949903 -235243761 + MER3 DNA MER1_type 94 206 -3 272 185 62 37 chr1 46950276 46950357 -235243307 - L2 LINE L2 -179 3093 3011 230 266 16 0 chr1 46950683 46950747 -235242917 - MIR SINE MIR -72 136 72 321 276 79 24 chr1 46951006 46951133 -235242531 - MIR SINE MIR -22 240 107 524 188 114 27 chr1 46951400 46951549 -235242115 + L1MD1 LINE L1 5936 6097 -145 491 125 2 2 chr1 46951677 46951754 -235241910 + MLT1C LTR MaLR 238 416 -51 1477 175 31 89 chr1 46952487 46952870 -235240794 + MLT1A1 LTR MaLR 5 365 0 184 318 34 0 chr1 46952911 46952999 -235240665 + L2 LINE L2 2969 3059 -213 479 301 3 111 chr1 46953139 46953445 -235240219 - L2 LINE L2 -8 3264 2992 252 0 0 0 chr1 46953803 46953831 -235239833 + (CA)n Simple_repeat Simple_repeat 1 28 0 1126 200 126 143 chr1 46954148 46954521 -235239143 - MLT1F1 LTR MaLR -6 561 198 189 74 0 0 chr1 46954521 46954548 -235239116 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 1126 200 126 143 chr1 46954548 46954683 -235238981 - MLT1F1 LTR MaLR -369 198 62 488 281 151 57 chr1 46955400 46955459 -235238205 + L2 LINE L2 2811 2863 -409 324 0 0 0 chr1 46955459 46955495 -235238169 + (CA)n Simple_repeat Simple_repeat 2 37 0 488 281 151 57 chr1 46955495 46955820 -235237844 + L2 LINE L2 2863 3231 -41 1147 253 16 68 chr1 46955931 46956314 -235237350 + LTR16A LTR ERVL 83 445 -5 1021 183 66 6 chr1 46957618 46957988 -235235676 + MLT1C LTR MaLR 56 467 0 192 77 0 0 chr1 46958390 46958416 -235235248 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 1879 156 68 27 chr1 46959250 46959616 -235234048 + MLT1B LTR MaLR 9 389 -1 354 236 79 0 chr1 46959637 46959726 -235233938 - L2 LINE L2 0 3313 3218 606 241 114 0 chr1 46960023 46960189 -235233475 + MER5A DNA MER1_type 5 189 0 318 277 43 0 chr1 46960360 46960454 -235233210 - MIR SINE MIR -112 150 53 2666 220 59 5 chr1 46961024 46961688 -235231976 + L1MB7 LINE L1 5484 6183 -1 223 275 69 46 chr1 46962491 46962622 -235231042 + MIR SINE MIR 59 192 -70 307 214 32 117 chr1 46963565 46963719 -235229945 + L3 LINE CR1 561 701 -876 265 203 119 0 chr1 46963780 46963839 -235229825 + L2 LINE L2 3243 3308 -5 1732 131 91 13 chr1 46963884 46964182 -235229482 - MER1B DNA MER1_type 0 339 19 1450 184 32 32 chr1 46964961 46965243 -235228421 - AluJo SINE Alu -30 282 1 390 302 150 43 chr1 46965785 46966005 -235227659 - L2 LINE L2 -40 3273 3078 249 108 0 0 chr1 46966005 46966042 -235227622 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 390 302 150 43 chr1 46966042 46966268 -235227396 - L2 LINE L2 -235 3078 2781 1702 149 61 38 chr1 46966281 46966623 -235227041 - MLT1A1 LTR MaLR -2 363 14 252 286 44 11 chr1 46967056 46967147 -235226517 + MIR3 SINE MIR 97 190 -18 2468 70 0 0 chr1 46967408 46967709 -235225955 - AluY SINE Alu -10 301 1 445 257 44 7 chr1 46968019 46968155 -235225509 - L2 LINE L2 0 3313 3173 5908 151 39 28 chr1 46968155 46968259 -235225405 + L1MA8 LINE L1 4530 4631 -1660 638 73 0 31 chr1 46968259 46968355 -235225309 + L1PA8 LINE L1 6079 6171 -1 5908 151 39 28 chr1 46968355 46968679 -235224985 + L1MA8 LINE L1 4631 4950 -1341 1970 108 108 17 chr1 46968679 46969023 -235224641 - THE1C LTR MaLR 0 375 1 5908 151 39 28 chr1 46969023 46970343 -235223321 + L1MA8 LINE L1 4950 6288 -3 345 345 50 0 chr1 46970354 46970554 -235223110 - L2 LINE L2 -137 3176 2967 5403 33 2 0 chr1 46970693 46971335 -235222329 - L1PA3 LINE L1 -3797 2349 1707 26031 23 0 0 chr1 46971335 46975133 -235218531 + L1PA3 LINE L1 2353 6155 0 917 263 114 72 chr1 46975151 46975343 -235218321 + L1MEd LINE L1 614 796 -5379 2028 158 124 16 chr1 46975343 46975729 -235217935 + MSTA LTR MaLR 1 428 0 917 263 114 72 chr1 46975729 46976572 -235217092 + L1MEd LINE L1 796 1731 -4444 1295 230 66 92 chr1 46976922 46977083 -235216581 - MLT1G LTR MaLR -18 572 408 1599 183 21 7 chr1 46977083 46977372 -235216292 + AluJo SINE Alu 3 295 -17 1295 230 66 92 chr1 46977372 46977640 -235216024 - MLT1G LTR MaLR -182 408 164 2530 171 64 21 chr1 46977640 46978124 -235215540 - MLT1D LTR MaLR 0 505 1 1295 230 66 92 chr1 46978124 46978283 -235215381 - MLT1G LTR MaLR -426 164 2 2425 105 0 0 chr1 46979858 46980162 -235213502 - AluSc SINE Alu -5 304 1 255 275 44 0 chr1 46980169 46980260 -235213404 - L1ME4a LINE L1 -2 6119 6025 907 275 48 94 chr1 46980936 46981477 -235212187 - MLT1K LTR MaLR -2 586 71 567 267 205 0 chr1 46981884 46982094 -235211570 - MIR SINE MIR -6 256 4 295 265 29 39 chr1 46982538 46982640 -235211024 - L2 LINE L2 -8 3305 3205 37 0 0 0 chr1 46983082 46983119 -235210545 + AT_rich Low_complexity Low_complexity 1 37 0 238 263 111 10 chr1 46983550 46983649 -235210015 - MER5A DNA MER1_type -5 184 76 21 57 0 0 chr1 46984020 46984055 -235209609 + AT_rich Low_complexity Low_complexity 1 35 0 2322 101 0 10 chr1 46984061 46984368 -235209296 - AluSx SINE Alu -4 308 5 866 233 17 0 chr1 46985699 46985871 -235207793 + MER5A DNA MER1_type 1 175 -14 331 190 209 44 chr1 46986008 46986166 -235207498 + L2 LINE L2 2878 3061 -252 183 129 0 0 chr1 46986312 46986343 -235207321 + (CA)n Simple_repeat Simple_repeat 2 32 0 238 227 0 93 chr1 46986344 46986441 -235207223 - L1MC4 LINE L1 -1339 6703 6616 2763 159 33 27 chr1 46987342 46987856 -235205808 - Charlie1b DNA MER1_type 0 523 7 226 291 85 57 chr1 46987883 46988024 -235205640 - MIR SINE MIR -68 140 5 499 290 37 33 chr1 46989512 46989726 -235203938 - HAL1 LINE L1 -698 1809 1595 426 279 102 24 chr1 46989845 46990141 -235203523 + MLT1L LTR MaLR 169 522 -93 341 293 48 24 chr1 46990149 46990316 -235203348 - HAL1 LINE L1 -910 1597 1427 429 262 199 22 chr1 46990626 46990893 -235202771 - HAL1 LINE L1 -1077 1430 1117 352 146 18 0 chr1 46990945 46991000 -235202664 - AluJo SINE Alu -21 281 226 1289 158 0 0 chr1 46991000 46991190 -235202474 - AluJo SINE Alu -122 190 1 298 239 109 0 chr1 46991261 46991353 -235202311 - HAL1 LINE L1 -1564 943 842 333 258 0 43 chr1 46993180 46993273 -235200391 + HsTC2 DNA Tc2 1 89 -1809 1808 171 52 35 chr1 46993273 46993435 -235200229 + MLT1A2 LTR MaLR 1 159 -215 1828 147 4 4 chr1 46993435 46993714 -235199950 + AluSx SINE Alu 33 311 -1 1808 171 52 35 chr1 46993714 46993919 -235199745 + MLT1A2 LTR MaLR 159 374 0 2167 128 40 77 chr1 46993976 46994381 -235199283 - MLT1B LTR MaLR 0 390 1 456 19 0 0 chr1 46996258 46996311 -235197353 + (GA)n Simple_repeat Simple_repeat 1 53 0 1692 111 0 4 chr1 46997725 46997978 -235195686 - AluSq SINE Alu 0 313 60 490 232 119 20 chr1 46998077 46998228 -235195436 - MIR SINE MIR -65 197 32 332 343 56 0 chr1 46998524 46998667 -235194997 + MIR SINE MIR 109 259 -3 548 270 20 0 chr1 46998741 46998893 -235194771 - MER97b DNA MER1_type? -870 183 29 517 326 158 32 chr1 46999061 47000068 -235193596 - L2 LINE L2 -342 2972 1839 577 261 43 51 chr1 47000104 47000338 -235193326 + L2 LINE L2 3081 3312 -1 589 302 43 79 chr1 47000574 47001044 -235192620 - LTR16A1 LTR ERVL -3 454 2 183 100 0 0 chr1 47001410 47001440 -235192224 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 233 234 0 0 chr1 47001447 47001494 -235192170 - L2 LINE L2 -11 3261 3215 380 296 15 30 chr1 47001671 47001806 -235191858 + MIR SINE MIR 109 241 -21 2002 153 16 0 chr1 47002220 47002527 -235191137 - AluSx SINE Alu 0 312 1 228 286 57 19 chr1 47002579 47002679 -235190985 + MIR SINE MIR 38 141 -67 482 229 37 0 chr1 47002679 47002788 -235190876 + MER5B DNA MER1_type 2 114 -64 786 179 159 0 chr1 47003875 47004026 -235189638 - MIR SINE MIR -87 175 1 2266 189 32 30 chr1 47004251 47004358 -235189306 + L1ME1 LINE L1 5673 5778 -388 2223 106 0 3 chr1 47004358 47004651 -235189013 + AluSg SINE Alu 1 292 -18 2266 189 32 30 chr1 47004651 47005036 -235188628 + L1ME1 LINE L1 5778 6166 0 227 227 15 0 chr1 47005145 47005211 -235188453 + CT-rich Low_complexity Low_complexity 1 67 0 216 0 0 0 chr1 47006387 47006411 -235187253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 256 274 85 24 chr1 47006952 47007116 -235186548 + L1ME3 LINE L1 89 262 -5943 546 271 76 65 chr1 47007196 47007628 -235186036 + L1ME3 LINE L1 1294 1730 -4666 2461 277 119 26 chr1 47007641 47009194 -235184470 + L1ME3 LINE L1 2381 4077 -2138 1027 247 53 78 chr1 47009301 47010084 -235183580 + L1ME3 LINE L1 5169 5926 -305 302 140 18 0 chr1 47010350 47010407 -235183257 + L1ME3 LINE L1 5962 6019 -212 1513 194 17 17 chr1 47011731 47012024 -235181640 - AluJo SINE Alu -19 293 1 234 0 0 0 chr1 47016435 47016461 -235177203 + (CCG)n Simple_repeat Simple_repeat 2 27 0 256 175 32 0 chr1 47017410 47017473 -235176191 + (TA)n Simple_repeat Simple_repeat 1 65 0 197 283 17 17 chr1 47019149 47019209 -235174455 - L3b LINE CR1 -218 1365 1306 2970 88 3 3 chr1 47019586 47019950 -235173714 + THE1B LTR MaLR 1 364 0 531 266 80 87 chr1 47020224 47020235 -235173429 + HAL1b LINE L1 334 344 -1004 238 50 50 0 chr1 47020235 47020275 -235173389 + (CA)n Simple_repeat Simple_repeat 1 42 0 531 266 80 87 chr1 47020275 47020980 -235172684 + HAL1b LINE L1 344 800 -548 340 70 18 18 chr1 47021113 47021170 -235172494 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 363 291 113 45 chr1 47021267 47021621 -235172043 + L1M4 LINE L1 4608 4985 -1161 2866 132 8 37 chr1 47021638 47022122 -235171542 + L1MA7 LINE L1 5822 6291 0 227 105 92 53 chr1 47022225 47022301 -235171363 + L1MA7 LINE L1 6212 6290 -1 192 161 0 0 chr1 47022429 47022460 -235171204 - L3 LINE CR1 -96 1481 1451 923 208 112 8 chr1 47022462 47022889 -235170775 + MLT1D LTR MaLR 1 500 -5 669 239 53 23 chr1 47023027 47023227 -235170437 + MIR SINE MIR 44 250 -12 544 308 88 26 chr1 47023232 47023537 -235170127 - L3 LINE CR1 -185 1392 1069 817 192 96 62 chr1 47023547 47023711 -235169953 + MER58C DNA MER1_type 1 175 -2245 2637 129 45 26 chr1 47023711 47024137 -235169527 - Tigger2a DNA MER2_type 0 434 1 817 192 96 62 chr1 47024137 47024180 -235169484 + MER58C DNA MER1_type 175 215 0 185 339 0 0 chr1 47024188 47024250 -235169414 - L3 LINE CR1 -565 1012 951 1051 264 84 12 chr1 47024276 47024713 -235168951 + MLT1J LTR MaLR 9 511 0 449 317 45 27 chr1 47024725 47024946 -235168718 - L3 LINE CR1 -660 917 693 213 214 0 0 chr1 47025116 47025158 -235168506 - L2 LINE L2 -21 3292 3251 2339 93 0 3 chr1 47026279 47026580 -235167084 + AluSg SINE Alu 1 300 -10 665 201 27 13 chr1 47026864 47027013 -235166651 - L1MD2 LINE L1 -15 6344 6194 7705 233 114 53 chr1 47027015 47027368 -235166296 - L1MD3 LINE L1 -166 8624 8294 449 136 0 15 chr1 47027368 47027434 -235166230 + AluJ/FLAM SINE Alu 6 70 -242 7705 233 114 53 chr1 47027434 47030787 -235162877 - L1MD3 LINE L1 -496 8294 4612 5061 241 27 12 chr1 47030775 47030795 -235162869 - L1MD3 LINE L1 -2617 4324 4306 * 210 37 0 0 chr1 47030795 47030822 -235162842 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5061 241 27 12 chr1 47030822 47032265 -235161399 - L1MD3 LINE L1 -2635 4306 2878 316 297 8 55 chr1 47032261 47032389 -235161275 - L1MD3 LINE L1 -5484 939 818 * 315 336 77 71 chr1 47032584 47033051 -235160613 - L1MD3 LINE L1 -5938 1003 534 22 0 0 0 chr1 47033599 47033621 -235160043 + AT_rich Low_complexity Low_complexity 1 22 0 205 354 199 6 chr1 47033629 47033810 -235159854 - MIR SINE MIR -3 259 44 260 37 74 0 chr1 47034221 47034275 -235159389 + (TA)n Simple_repeat Simple_repeat 1 58 0 402 210 118 8 chr1 47035300 47035419 -235158245 + MER94 DNA DNA 3 134 0 248 350 58 40 chr1 47035741 47035940 -235157724 + MLT1K LTR MaLR 110 312 -276 1042 170 27 0 chr1 47035940 47036144 -235157520 + MER33 DNA MER1_type 1 186 -95 394 243 43 29 chr1 47036192 47036332 -235157332 + MLT1K LTR MaLR 447 588 0 187 278 14 56 chr1 47036387 47036459 -235157205 - L3 LINE CR1 -460 1117 1049 696 334 50 24 chr1 47036539 47036916 -235156748 + L2 LINE L2 2920 3306 -7 24 32 0 0 chr1 47037666 47037697 -235155967 + AT_rich Low_complexity Low_complexity 1 31 0 248 351 0 11 chr1 47038216 47038310 -235155354 - MIR3 SINE MIR -2 206 114 245 189 11 56 chr1 47038368 47038458 -235155206 + T-rich Low_complexity Low_complexity 2 87 0 201 220 102 17 chr1 47038955 47039014 -235154650 - L2 LINE L2 0 3272 3209 188 211 0 18 chr1 47039346 47039403 -235154261 + GA-rich Low_complexity Low_complexity 2 57 0 1863 290 136 15 chr1 47039403 47040250 -235153414 - L2 LINE L2 -1201 2113 1165 376 242 20 10 chr1 47040303 47040402 -235153262 - MER5A DNA MER1_type -81 108 9 30 0 0 0 chr1 47040490 47040520 -235153144 + AT_rich Low_complexity Low_complexity 1 30 0 291 287 255 20 chr1 47040607 47040854 -235152810 + L2 LINE L2 2140 2444 -870 1578 266 107 32 chr1 47040871 47041394 -235152270 + L1MC4a LINE L1 5397 5989 -1819 2313 68 3 26 chr1 47041394 47041705 -235151959 - AluY SINE Alu -7 304 1 1578 266 107 32 chr1 47041705 47041906 -235151758 + L1MC4a LINE L1 5989 6174 -1634 2531 140 22 11 chr1 47042358 47042802 -235150862 + L1MB3 LINE L1 5733 6181 -2 16707 67 15 1 chr1 47042955 47045075 -235148589 + HERV17 LTR ERV1 1566 3716 -4910 1246 156 68 52 chr1 47045343 47045650 -235148014 - MER33 DNA MER1_type 0 324 13 2228 150 35 56 chr1 47047044 47047088 -235146576 - L1MB3 LINE L1 0 6183 6140 2241 95 0 0 chr1 47047088 47047384 -235146280 - AluSg SINE Alu -14 296 1 2228 150 35 56 chr1 47047384 47047818 -235145846 - L1MB3 LINE L1 -43 6140 5715 284 302 123 42 chr1 47047926 47048138 -235145526 - L2 LINE L2 -210 3062 2834 385 264 123 25 chr1 47049820 47049983 -235143681 - MIR SINE MIR -71 191 13 1892 152 0 13 chr1 47050042 47050351 -235143313 + AluSx SINE Alu 1 305 -7 807 240 80 13 chr1 47050368 47050593 -235143071 - MIR SINE MIR -10 252 13 1016 241 147 25 chr1 47050827 47051221 -235142443 + L2 LINE L2 2872 3313 0 234 341 45 0 chr1 47052020 47052108 -235141556 + MIR SINE MIR 169 260 -2 229 308 58 19 chr1 47052782 47052886 -235140778 + MIR3 SINE MIR 7 114 -94 1964 85 41 4 chr1 47054058 47054374 -235139290 + AluSx SINE Alu 1 326 0 1831 131 3 24 chr1 47054736 47055066 -235138598 + AluJb SINE Alu 1 324 0 348 286 71 58 chr1 47055477 47055785 -235137879 - MLT1I LTR MaLR 0 409 98 340 279 44 44 chr1 47056027 47056163 -235137501 + MIR3 SINE MIR 15 150 -58 435 323 130 8 chr1 47056506 47056739 -235136925 + MIR3 SINE MIR 3 249 -13 232 280 0 0 chr1 47056849 47056899 -235136765 + MIR SINE MIR 195 244 -18 2095 113 13 0 chr1 47056909 47057211 -235136453 - AluSx SINE Alu -6 306 1 265 148 0 125 chr1 47057386 47057466 -235136198 - MLT1L LTR MaLR -1 603 530 2160 103 13 7 chr1 47057874 47058176 -235135488 + AluSg SINE Alu 1 304 -6 2094 164 186 198 chr1 47058612 47058665 -235134999 - L1MD3 LINE L1 -19 7976 7924 926 162 60 51 chr1 47058665 47058899 -235134765 - MER106A DNA MER1_type 0 236 1 2094 164 186 198 chr1 47058899 47059354 -235134310 - L1MD3 LINE L1 -71 7924 7465 582 231 35 0 chr1 47059354 47059497 -235134167 - MLT1F1 LTR MaLR -419 148 1 2094 164 186 198 chr1 47059497 47059588 -235134076 - L1MD3 LINE L1 -530 7465 7374 2139 52 0 19 chr1 47059588 47059884 -235133780 + AluY SINE Alu 23 313 0 2094 164 186 198 chr1 47059884 47060356 -235133308 - L1MD3 LINE L1 -621 7374 6774 2230 128 36 25 chr1 47061369 47061728 -235131936 + THE1B LTR MaLR 2 364 0 236 244 61 49 chr1 47061992 47062074 -235131590 + L3 LINE CR1 1493 1575 -2 834 277 10 0 chr1 47063200 47063406 -235130258 + MIR SINE MIR 55 262 0 1211 136 36 45 chr1 47063424 47063645 -235130019 - MER20 DNA MER1_type 0 219 1 232 255 0 0 chr1 47064082 47064129 -235129535 - L2 LINE L2 -21 3292 3246 180 293 69 17 chr1 47064466 47064524 -235129140 + L3b LINE CR1 1418 1478 -105 379 321 70 37 chr1 47064995 47065182 -235128482 + L2 LINE L2 3075 3267 -5 277 307 43 21 chr1 47065816 47065956 -235127708 + L2 LINE L2 2917 3059 -213 264 193 248 35 chr1 47066093 47066238 -235127426 - Charlie7 DNA MER1_type -6 2606 2431 225 194 90 60 chr1 47066685 47066752 -235126912 - MIR3 SINE MIR -54 154 86 3733 211 122 54 chr1 47066992 47068010 -235125654 - LTR28 LTR ERV1 -5 1750 1 249 356 10 0 chr1 47068014 47068115 -235125549 + (CA)n Simple_repeat Simple_repeat 1 102 0 256 294 6 11 chr1 47068119 47068296 -235125368 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 435 315 0 0 chr1 47068303 47068631 -235125033 + (CA)n Simple_repeat Simple_repeat 1 328 0 241 284 111 12 chr1 47069227 47069308 -235124356 - L2 LINE L2 0 3313 3225 421 229 74 91 chr1 47069565 47069644 -235124020 - MIR SINE MIR -41 221 142 923 196 0 18 chr1 47069644 47069812 -235123852 - FAM SINE Alu -10 165 1 421 229 74 91 chr1 47069812 47069907 -235123757 - MIR SINE MIR -120 142 50 2483 113 7 44 chr1 47070209 47070616 -235123048 + L1MB5 LINE L1 5568 5959 -215 182 258 28 165 chr1 47070910 47071092 -235122572 + MER5B DNA MER1_type 5 161 -17 1922 120 7 0 chr1 47071580 47071896 -235121768 + AluSp SINE Alu 1 318 0 1224 164 68 64 chr1 47071998 47072175 -235121489 - AluJo SINE Alu 0 312 131 2225 59 0 11 chr1 47072175 47072501 -235121163 + AluY SINE Alu 1 323 0 1224 164 68 64 chr1 47072501 47072633 -235121031 - AluJo SINE Alu -181 131 1 611 228 0 8 chr1 47072695 47072818 -235120846 - L2 LINE L2 0 3313 3192 441 282 55 51 chr1 47072873 47073128 -235120536 - L1ME4a LINE L1 -238 5883 5628 3075 207 34 39 chr1 47073209 47074614 -235119050 - L1MD2 LINE L1 -98 6068 4662 691 239 44 19 chr1 47074613 47074818 -235118846 - L1ME4a LINE L1 -506 5615 5406 * 936 249 134 61 chr1 47075100 47075825 -235117839 + L2 LINE L2 2523 3312 -1 2091 98 0 23 chr1 47075871 47076214 -235117450 - AluSq SINE Alu 0 313 1 745 241 72 34 chr1 47076216 47076481 -235117183 - L1ME LINE L1 -382 5739 5465 815 144 144 36 chr1 47076856 47077023 -235116641 - MER5A DNA MER1_type -4 185 1 251 326 92 0 chr1 47077468 47077566 -235116098 - MIR3 SINE MIR -52 156 50 180 0 0 0 chr1 47078248 47078268 -235115396 + (A)n Simple_repeat Simple_repeat 1 20 0 245 299 88 42 chr1 47078367 47078546 -235115118 - MIR SINE MIR -60 202 25 1992 92 7 52 chr1 47078584 47078889 -235114775 + AluSx SINE Alu 6 296 -16 282 269 239 0 chr1 47079031 47079161 -235114503 + MER5A DNA MER1_type 23 183 -6 540 283 116 10 chr1 47079322 47079520 -235114144 - MIR SINE MIR -8 254 36 308 319 9 60 chr1 47079820 47079936 -235113728 - MIR3 SINE MIR -52 156 47 181 308 133 8 chr1 47079883 47080003 -235113661 - L2 LINE L2 -475 2839 2705 * 252 0 0 0 chr1 47080160 47080188 -235113476 + (CA)n Simple_repeat Simple_repeat 1 28 0 336 250 142 14 chr1 47080694 47080842 -235112822 - MIR SINE MIR -77 185 19 445 270 95 15 chr1 47080891 47081028 -235112636 + MIR SINE MIR 105 252 -10 358 245 35 63 chr1 47081643 47081786 -235111878 - L1ME LINE L1 -454 5667 5529 295 299 96 16 chr1 47081763 47081950 -235111714 + L1ME4a LINE L1 5691 5892 -229 * 517 188 161 20 chr1 47081979 47082128 -235111536 + L1ME4a LINE L1 5951 6120 -1 291 160 60 0 chr1 47082522 47082572 -235111092 + MIR SINE MIR 118 170 -92 215 263 35 0 chr1 47083626 47083683 -235109981 - L2 LINE L2 0 3313 3255 261 289 112 27 chr1 47084600 47084787 -235108877 + L2 LINE L2 2966 3168 -145 197 204 68 0 chr1 47084846 47084890 -235108774 + L2 LINE L2 3192 3238 -75 2270 74 3 10 chr1 47085254 47085553 -235108111 + AluSc SINE Alu 1 297 -12 346 279 0 74 chr1 47086120 47086142 -235107522 - L2 LINE L2 -3 3269 3247 198 0 0 0 chr1 47086142 47086164 -235107500 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 346 279 0 74 chr1 47086164 47086263 -235107401 - L2 LINE L2 -25 3247 3157 278 290 61 10 chr1 47086327 47086459 -235107205 - MER20B DNA MER1_type 0 219 80 638 258 71 6 chr1 47086568 47086750 -235106914 - MIR SINE MIR -65 197 4 520 228 0 6 chr1 47087296 47087454 -235106210 + (TGGA)n Simple_repeat Simple_repeat 1 157 0 252 342 198 20 chr1 47087690 47087892 -235105772 - MIR SINE MIR -3 259 22 322 289 196 21 chr1 47088395 47088582 -235105082 + MIR3 SINE MIR 34 249 -13 235 283 62 35 chr1 47088743 47088856 -235104808 - MIR3 SINE MIR -89 119 4 187 241 35 17 chr1 47088940 47088998 -235104666 + L2 LINE L2 3210 3268 -4 534 191 62 0 chr1 47089448 47089593 -235104071 + MIR SINE MIR 1 148 -62 333 338 26 26 chr1 47089787 47089938 -235103726 + MIR SINE MIR 89 239 -23 230 363 9 26 chr1 47089996 47090109 -235103555 + MIR SINE MIR 35 145 -63 392 323 0 15 chr1 47090822 47090955 -235102709 - MIR SINE MIR -56 152 22 320 296 26 35 chr1 47091881 47091996 -235101668 + MIR3 SINE MIR 49 162 -46 506 299 32 11 chr1 47092289 47092476 -235101188 - MIR SINE MIR -54 208 18 212 310 136 39 chr1 47092768 47092923 -235100741 + L2 LINE L2 3098 3267 -5 253 232 0 0 chr1 47094217 47094273 -235099391 + (CAT)n Simple_repeat Simple_repeat 1 56 0 458 305 56 24 chr1 47094345 47094558 -235099106 + MIR SINE MIR 20 239 -23 256 257 124 29 chr1 47095281 47095386 -235098278 - MIR SINE MIR -117 145 31 412 282 60 13 chr1 47096000 47096149 -235097515 + MIR3 SINE MIR 24 179 -29 330 281 24 0 chr1 47096579 47096661 -235097003 - L2 LINE L2 -1 3271 3188 434 264 91 0 chr1 47097213 47097323 -235096341 + MIR SINE MIR 47 166 -96 2110 218 116 4 chr1 47097680 47098161 -235095503 - MLT1F LTR MaLR -4 538 4 356 316 68 17 chr1 47098470 47098587 -235095077 + L3 LINE CR1 1380 1502 -75 357 240 144 16 chr1 47099231 47099356 -235094308 - MIR3 SINE MIR -43 165 25 325 322 25 0 chr1 47099513 47099631 -235094033 + MIR SINE MIR 31 151 -111 379 288 14 29 chr1 47099880 47100019 -235093645 + MIR3 SINE MIR 40 176 -32 232 261 102 0 chr1 47100217 47100305 -235093359 - MIR SINE MIR -67 141 45 541 279 57 0 chr1 47101299 47101457 -235092207 - MIR SINE MIR -70 192 26 359 287 58 23 chr1 47101671 47101845 -235091819 - MIR SINE MIR -63 199 20 341 261 127 22 chr1 47102323 47102457 -235091207 + MIR SINE MIR 101 248 -14 303 321 51 31 chr1 47102642 47102838 -235090826 - L3 LINE CR1 -33 1544 1345 376 313 17 0 chr1 47102965 47103080 -235090584 + MIR SINE MIR 2 118 -144 305 270 45 11 chr1 47103773 47103862 -235089802 + MIR SINE MIR 86 177 -85 462 284 7 21 chr1 47104467 47104608 -235089056 + MIR SINE MIR 47 185 -77 182 293 52 0 chr1 47105065 47105123 -235088541 + MIR SINE MIR 83 143 -65 192 77 0 0 chr1 47105755 47105781 -235087883 + (CCCTAA)n Simple_repeat Simple_repeat 3 28 0 350 57 19 0 chr1 47106062 47106115 -235087549 + (TG)n Simple_repeat Simple_repeat 1 54 0 466 291 112 44 chr1 47106371 47106667 -235086997 + L2 LINE L2 2553 2868 -446 220 184 0 0 chr1 47106680 47106718 -235086946 + CT-rich Low_complexity Low_complexity 1 38 0 325 271 45 121 chr1 47106746 47106945 -235086719 + L2 LINE L2 2999 3182 -90 792 170 0 22 chr1 47107006 47107188 -235086476 + GA-rich Low_complexity Low_complexity 1 178 0 217 254 14 42 chr1 47107264 47107335 -235086329 - L2 LINE L2 -11 3261 3193 864 298 11 30 chr1 47107746 47108011 -235085653 + MIR SINE MIR 1 260 -2 2163 93 7 20 chr1 47108086 47108387 -235085277 + AluSq SINE Alu 1 297 -16 4309 121 20 0 chr1 47108387 47109023 -235084641 - L1MB1 LINE L1 -6 6162 5514 313 309 30 36 chr1 47109671 47109836 -235083828 + MIR SINE MIR 28 191 -71 211 256 38 90 chr1 47110314 47110447 -235083217 + L2 LINE L2 2924 3049 -223 345 82 0 0 chr1 47110777 47110826 -235082838 + (TG)n Simple_repeat Simple_repeat 1 49 0 180 125 0 0 chr1 47110828 47110860 -235082804 + (GA)n Simple_repeat Simple_repeat 2 33 0 464 221 48 0 chr1 47111147 47111251 -235082413 - MIR SINE MIR -48 214 106 348 279 16 39 chr1 47111614 47111743 -235081921 + L2 LINE L2 3186 3311 -2 272 333 21 0 chr1 47111841 47111934 -235081730 + MIR SINE MIR 38 132 -76 1067 254 113 47 chr1 47111959 47112341 -235081323 + L2 LINE L2 2905 3311 -2 215 337 48 0 chr1 47113872 47113955 -235079709 - MIR SINE MIR -144 118 32 388 373 76 0 chr1 47115025 47115250 -235078414 + MIR SINE MIR 9 250 -12 272 303 18 28 chr1 47115252 47115361 -235078303 + CT-rich Low_complexity Low_complexity 1 108 0 507 263 26 7 chr1 47115792 47115944 -235077720 + L3 LINE CR1 1350 1504 -73 185 260 100 0 chr1 47116081 47116131 -235077533 - MIR SINE MIR -160 102 48 457 274 73 54 chr1 47117094 47117298 -235076366 + L2 LINE L2 3103 3310 -3 239 260 31 52 chr1 47117498 47117594 -235076070 + MIR3 SINE MIR 106 199 -9 473 321 85 40 chr1 47117938 47118162 -235075502 - MIR SINE MIR -21 241 8 489 298 77 32 chr1 47118530 47118764 -235074900 + MIR SINE MIR 4 247 -15 183 205 26 0 chr1 47119175 47119214 -235074450 - MIR3 SINE MIR -7 201 162 309 180 16 0 chr1 47120278 47120339 -235073325 - MLT1L LTR MaLR -7 608 547 261 233 88 138 chr1 47120529 47120688 -235072976 - MLT1L LTR MaLR -299 316 166 436 285 0 8 chr1 47120879 47121002 -235072662 - LTR67 LTR ERVL -8 549 428 715 274 66 8 chr1 47121716 47121957 -235071707 - MIR SINE MIR -4 258 4 1985 135 26 0 chr1 47123014 47123318 -235070346 + AluSx SINE Alu 1 312 0 1049 145 11 6 chr1 47123330 47123509 -235070155 + L1PA16 LINE L1 5953 6132 -34 386 214 0 0 chr1 47123589 47123659 -235070005 - MER58A DNA MER1_type -21 86 17 354 345 12 36 chr1 47123790 47123955 -235069709 - L1ME LINE L1 -459 5662 5502 336 284 65 24 chr1 47124415 47124584 -235069080 + MIR SINE MIR 82 257 -5 196 250 0 0 chr1 47124666 47124718 -235068946 + L2 LINE L2 3262 3313 0 * 334 282 120 8 chr1 47124709 47124826 -235068838 + MIR SINE MIR 15 144 -118 220 309 44 0 chr1 47124854 47124922 -235068742 - MIR SINE MIR -124 138 68 542 242 103 36 chr1 47125490 47125655 -235068009 - MIR SINE MIR -72 190 15 226 351 0 21 chr1 47125872 47125966 -235067698 - L2 LINE L2 0 3313 3222 * 1136 216 38 1 chr1 47125961 47126215 -235067449 - MIR SINE MIR 0 262 1 314 296 53 65 chr1 47126397 47126566 -235067098 + MIR SINE MIR 40 206 -56 201 74 0 0 chr1 47126641 47126668 -235066996 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 251 328 50 17 chr1 47126821 47126940 -235066724 - L2 LINE L2 -9 3263 3141 528 317 43 5 chr1 47126983 47127191 -235066473 - MIR SINE MIR 0 262 47 195 204 0 0 chr1 47127368 47127417 -235066247 + (ATG)n Simple_repeat Simple_repeat 2 50 0 401 359 48 0 chr1 47127428 47127595 -235066069 - MIR SINE MIR -12 250 76 239 282 0 28 chr1 47127657 47127728 -235065936 + L2 LINE L2 3204 3272 0 231 146 21 0 chr1 47128205 47128253 -235065411 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 404 286 43 21 chr1 47128898 47129038 -235064626 + MIR3 SINE MIR 20 162 -46 562 315 107 47 chr1 47129319 47129617 -235064047 - L2 LINE L2 -18 3254 2939 870 231 57 13 chr1 47131460 47131689 -235061975 - MIR SINE MIR -1 261 23 307 317 20 10 chr1 47132314 47132430 -235061234 + MIR SINE MIR 33 149 -63 304 238 228 11 chr1 47132696 47132885 -235060779 - L1ME4a LINE L1 -3 6118 5889 384 297 20 11 chr1 47133505 47133692 -235059972 - MIR3 SINE MIR -60 202 14 226 315 54 18 chr1 47134046 47134157 -235059507 + L2 LINE L2 3182 3296 -17 321 269 228 6 chr1 47134677 47134848 -235058816 + MIR SINE MIR 28 236 -26 189 107 0 0 chr1 47135121 47135149 -235058515 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 205 316 137 0 chr1 47135154 47135249 -235058415 - L2 LINE L2 -14 3258 3151 618 324 88 45 chr1 47135589 47136210 -235057454 + L1ME LINE L1 4773 5427 -756 286 304 72 7 chr1 47136271 47136409 -235057255 + L1ME LINE L1 5510 5656 -465 762 267 116 4 chr1 47136436 47136668 -235056996 + MIR SINE MIR 2 259 -3 383 200 0 33 chr1 47136674 47136764 -235056900 + L1ME LINE L1 5683 5769 -352 309 201 111 118 chr1 47136912 47136933 -235056731 + HAL1b LINE L1 1196 1216 -132 2762 219 18 70 chr1 47136933 47137459 -235056205 + MER82 DNA MER2_type 5 488 -165 1786 90 5 0 chr1 47137459 47137681 -235055983 + AluSx SINE Alu 3 225 -87 2762 219 18 70 chr1 47137681 47137839 -235055825 + MER82 DNA MER2_type 488 653 0 309 201 111 118 chr1 47137839 47137854 -235055810 + HAL1b LINE L1 1216 1230 -118 2032 189 22 6 chr1 47137854 47138213 -235055451 - MLT1A1 LTR MaLR 0 365 1 309 201 111 118 chr1 47138213 47138319 -235055345 + HAL1b LINE L1 1230 1338 -10 1045 183 46 54 chr1 47138413 47138654 -235055010 - MIR SINE MIR 0 262 24 2513 87 0 0 chr1 47138654 47138965 -235054699 - AluSq SINE Alu -2 311 1 183 303 30 0 chr1 47139479 47139545 -235054119 + L2 LINE L2 3246 3313 0 213 121 0 0 chr1 47141594 47141627 -235052037 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 289 216 68 0 chr1 47141737 47141811 -235051853 + Charlie4 DNA MER1_type 1883 1961 0 725 248 228 23 chr1 47142277 47142646 -235051018 + L2 LINE L2 2709 3153 -160 247 307 30 20 chr1 47142750 47142851 -235050813 - MIR SINE MIR -56 206 105 2245 112 0 10 chr1 47143227 47143563 -235050101 + AluSx SINE Alu 1 312 0 229 303 0 15 chr1 47144131 47144197 -235049467 - L2 LINE L2 -91 3181 3117 182 292 0 0 chr1 47144523 47144571 -235049093 - MIR SINE MIR -171 91 44 392 204 87 19 chr1 47144720 47144823 -235048841 + MIR SINE MIR 111 220 -42 365 244 167 42 chr1 47144873 47145041 -235048623 - MIR SINE MIR -65 197 9 405 247 88 9 chr1 47145401 47145545 -235048119 + MIR3 SINE MIR 10 173 -35 225 326 31 61 chr1 47146456 47146652 -235047012 + L2 LINE L2 2870 3059 -213 392 275 97 43 chr1 47147154 47147361 -235046303 - L2 LINE L2 -27 3245 3028 1578 185 0 0 chr1 47148213 47148462 -235045202 + AluJo SINE Alu 7 255 -57 288 0 0 0 chr1 47148479 47148511 -235045153 + (CA)n Simple_repeat Simple_repeat 2 33 0 559 233 68 27 chr1 47148558 47148704 -235044960 + MIR SINE MIR 111 262 0 684 202 30 36 chr1 47148770 47148938 -235044726 - L1MB1 LINE L1 -1 6167 6001 394 255 24 4 chr1 47150214 47150339 -235043325 + MIR SINE MIR 20 146 -62 595 287 19 15 chr1 47152021 47152286 -235041378 + L1ME4a LINE L1 5676 5941 -180 2283 99 3 7 chr1 47152309 47152603 -235041061 + AluSq SINE Alu 1 293 -20 619 280 50 41 chr1 47152697 47152915 -235040749 + MIR SINE MIR 37 256 -6 1147 212 18 14 chr1 47153068 47153290 -235040374 + MER58A DNA MER1_type 2 224 0 594 191 38 33 chr1 47153298 47153340 -235040324 - Charlie5 DNA MER1_type 0 2624 2584 2259 128 0 0 chr1 47153340 47153646 -235040018 - AluSx SINE Alu -6 306 1 594 191 38 33 chr1 47153646 47153786 -235039878 - Charlie5 DNA MER1_type -40 2584 2441 758 239 60 5 chr1 47153789 47153990 -235039674 - Charlie5 DNA MER1_type -2354 258 47 1605 173 45 45 chr1 47154117 47154429 -235039235 - AluJo SINE Alu 0 312 1 203 218 91 0 chr1 47154963 47155018 -235038646 - MIR SINE MIR -72 136 77 596 262 8 0 chr1 47155842 47155968 -235037696 + MIR SINE MIR 78 204 -58 230 143 0 0 chr1 47156050 47156085 -235037579 - U2 snRNA snRNA -153 35 1 268 308 103 20 chr1 47156307 47156453 -235037211 - MIR3 SINE MIR -48 160 3 483 192 45 107 chr1 47156637 47156699 -235036965 + MIR SINE MIR 29 93 -169 2200 152 113 0 chr1 47156699 47157087 -235036577 + MSTB1 LTR MaLR 1 432 0 483 192 45 107 chr1 47157087 47157201 -235036463 + MIR SINE MIR 93 194 -68 432 0 0 0 chr1 47157716 47157764 -235035900 + (CA)n Simple_repeat Simple_repeat 2 49 0 241 421 13 0 chr1 47157773 47157925 -235035739 + L2 LINE L2 2871 3024 -248 878 256 48 63 chr1 47157962 47158360 -235035304 + MLT1J LTR MaLR 120 511 0 235 339 83 58 chr1 47158381 47158829 -235034835 + L2 LINE L2 2809 3267 -5 215 292 133 25 chr1 47159535 47159655 -235034009 + L3 LINE CR1 1200 1332 -245 239 269 90 0 chr1 47160157 47160235 -235033429 - L2 LINE L2 0 3313 3229 727 279 65 34 chr1 47160394 47160652 -235033012 - L1ME4a LINE L1 -31 6090 5841 2289 119 31 6 chr1 47160652 47161004 -235032660 - THE1B LTR MaLR 0 364 4 727 279 65 34 chr1 47161004 47161178 -235032486 - L1ME4a LINE L1 -280 5841 5674 233 29 29 0 chr1 47161178 47161212 -235032452 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 727 279 65 34 chr1 47161212 47161376 -235032288 - L1ME4a LINE L1 -447 5674 5321 691 170 15 0 chr1 47161395 47161530 -235032134 - L1MD3 LINE L1 -10 7985 7849 537 176 0 0 chr1 47161530 47161615 -235032049 - AluJ/FRAM SINE Alu -14 298 214 2167 186 79 80 chr1 47161657 47162087 -235031577 - L1MD3 LINE L1 -137 7858 7429 493 165 19 29 chr1 47162087 47162190 -235031474 - MLT1F1 LTR MaLR -429 138 37 2167 186 79 80 chr1 47162190 47162237 -235031427 - L1MD3 LINE L1 -566 7429 7383 225 65 0 0 chr1 47162237 47162268 -235031396 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2167 186 79 80 chr1 47162268 47162781 -235030883 - L1MD3 LINE L1 -612 7383 6503 1143 181 75 31 chr1 47163428 47163720 -235029944 + L1MD1 LINE L1 5936 6240 -2 1027 299 131 16 chr1 47164025 47164211 -235029453 - L2 LINE L2 -17 3296 3133 2350 112 3 0 chr1 47164211 47164523 -235029141 + AluSp SINE Alu 1 313 0 1027 299 131 16 chr1 47164523 47165103 -235028561 - L2 LINE L2 -180 3133 2447 247 206 15 29 chr1 47166055 47166123 -235027541 + MER5A DNA MER1_type 55 121 -68 1417 186 61 72 chr1 47166275 47166652 -235027012 + MLT1A2 LTR MaLR 2 374 0 864 269 147 12 chr1 47166759 47167222 -235026442 + L2 LINE L2 2705 3312 -1 214 328 60 0 chr1 47167349 47167416 -235026248 - L2 LINE L2 0 3272 3202 388 292 68 21 chr1 47168240 47168395 -235025269 + MIR SINE MIR 7 168 -63 231 264 0 0 chr1 47168487 47168540 -235025124 + L3 LINE CR1 1507 1559 -18 338 278 235 11 chr1 47168963 47169150 -235024514 + MIR SINE MIR 23 251 -11 248 240 0 20 chr1 47169134 47169184 -235024480 - L2 LINE L2 -16 3256 3208 * 1869 148 0 11 chr1 47169292 47169575 -235024089 - AluJo SINE Alu -17 295 16 200 301 68 19 chr1 47169575 47169678 -235023986 - MIR SINE MIR -85 123 16 411 242 20 0 chr1 47169690 47169789 -235023875 + MER5A DNA MER1_type 9 109 -80 593 260 48 39 chr1 47169808 47170016 -235023648 + MIR SINE MIR 1 210 -52 706 333 5 0 chr1 47170422 47170608 -235023056 - MIR3 SINE MIR -6 202 16 640 302 94 18 chr1 47170630 47170971 -235022693 - L2 LINE L2 0 3313 2947 1003 285 66 17 chr1 47171007 47171413 -235022251 - LTR16A LTR ERVL 0 457 1 240 336 67 27 chr1 47171512 47171661 -235022003 - L2 LINE L2 0 3313 3159 43 20 0 0 chr1 47172217 47172267 -235021397 + AT_rich Low_complexity Low_complexity 1 50 0 228 316 3 0 chr1 47173091 47173168 -235020496 + MIR SINE MIR 68 146 -62 263 267 151 49 chr1 47173291 47173516 -235020148 - MARNA DNA Mariner -166 420 173 217 180 40 0 chr1 47173875 47173925 -235019739 + CT-rich Low_complexity Low_complexity 4 55 0 287 263 172 0 chr1 47174846 47174945 -235018719 + MIR SINE MIR 81 196 -66 892 238 43 0 chr1 47175084 47175294 -235018370 + HERVH LTR ERV1 1760 1978 -5735 943 113 0 8 chr1 47175295 47175428 -235018236 + AluSp/q SINE Alu 174 305 -8 379 224 13 13 chr1 47175767 47175843 -235017821 + MER91B DNA MER1_type 1 76 -114 1989 146 0 7 chr1 47175930 47176218 -235017446 + AluJb SINE Alu 3 288 -24 1153 106 12 12 chr1 47176265 47176426 -235017238 + AluSq SINE Alu 1 161 -152 585 208 7 28 chr1 47176668 47176812 -235016852 + LTR7 LTR ERV1 303 443 -7 855 141 8 0 chr1 47176817 47176945 -235016719 + AluSq SINE Alu 155 283 -30 608 76 0 29 chr1 47176945 47177050 -235016614 + (TC)n Simple_repeat Simple_repeat 1 102 0 387 0 0 0 chr1 47177050 47177093 -235016571 + (TA)n Simple_repeat Simple_repeat 2 44 0 352 287 28 56 chr1 47177641 47177784 -235015880 + MIR SINE MIR 83 221 -41 403 271 88 24 chr1 47178333 47178503 -235015161 + MIR SINE MIR 7 187 -75 1620 209 56 26 chr1 47178524 47178902 -235014762 - MLT1B LTR MaLR 0 390 2 636 257 115 71 chr1 47179420 47179871 -235013793 + MLT1H LTR MaLR 75 545 -4 522 246 41 8 chr1 47180962 47181084 -235012580 - L2 LINE L2 -1 3312 3187 279 258 21 32 chr1 47181315 47181408 -235012256 + MER94 DNA DNA 2 93 -41 340 217 12 24 chr1 47181411 47181494 -235012170 + MER94 DNA DNA 52 133 -1 492 298 38 13 chr1 47181495 47181730 -235011934 + L1M4 LINE L1 2381 2621 -3525 807 179 6 73 chr1 47181756 47181935 -235011729 + MER58A DNA MER1_type 24 190 -34 882 261 99 81 chr1 47181954 47182545 -235011119 + L1M4 LINE L1 2635 3298 -2848 360 277 146 15 chr1 47182701 47182831 -235010833 + MIR SINE MIR 22 168 -94 508 278 109 38 chr1 47183379 47183791 -235009873 - L1M4 LINE L1 -527 5651 5211 297 268 12 12 chr1 47183836 47183918 -235009746 - MIR SINE MIR -161 101 20 442 341 77 74 chr1 47184685 47185008 -235008656 - L2 LINE L2 -10 3262 2939 252 0 0 0 chr1 47185123 47185151 -235008513 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1974 123 30 0 chr1 47185157 47185426 -235008238 - AluSx SINE Alu -35 277 1 266 250 0 15 chr1 47185685 47185753 -235007911 + MIR SINE MIR 13 79 -183 954 135 0 7 chr1 47185926 47186074 -235007590 + AluSg/x SINE Alu 164 310 0 446 278 172 57 chr1 47186144 47186330 -235007334 + L2 LINE L2 2751 2914 -399 1944 149 13 0 chr1 47186330 47186638 -235007026 - AluJo SINE Alu 0 312 1 446 278 172 57 chr1 47186638 47186791 -235006873 + L2 LINE L2 2914 3048 -265 186 43 0 0 chr1 47186791 47186814 -235006850 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 446 278 172 57 chr1 47186814 47186973 -235006691 + L2 LINE L2 3048 3310 -3 409 284 110 13 chr1 47187308 47187463 -235006201 + MIR SINE MIR 35 204 -58 231 244 268 0 chr1 47188582 47188664 -235005000 + MIR SINE MIR 49 152 -56 810 109 0 0 chr1 47188665 47188812 -235004852 + AluSg/x SINE Alu 172 318 0 288 330 85 0 chr1 47189171 47189277 -235004387 - L3 LINE CR1 -430 1147 1033 930 185 12 0 chr1 47189378 47189540 -235004124 - FRAM SINE Alu -2 164 1 199 211 0 0 chr1 47189885 47189923 -235003741 + MIR SINE MIR 109 146 -62 509 283 173 18 chr1 47190166 47190392 -235003272 + MIR SINE MIR 2 262 0 787 285 25 8 chr1 47192741 47192976 -235000688 + MIR SINE MIR 12 250 -12 825 231 62 37 chr1 47193563 47193806 -234999858 + MIR SINE MIR 13 261 -1 200 176 0 0 chr1 47194362 47194396 -234999268 + CT-rich Low_complexity Low_complexity 3 36 0 294 303 83 14 chr1 47195290 47195435 -234998229 - MIR SINE MIR -105 157 3 228 276 41 41 chr1 47196224 47196322 -234997342 - MIR SINE MIR -79 183 86 2090 118 0 10 chr1 47196470 47196775 -234996889 - AluSx SINE Alu -10 302 1 332 286 79 40 chr1 47197308 47197434 -234996230 + MIR SINE MIR 62 192 -70 21 36 0 0 chr1 47197761 47197789 -234995875 + AT_rich Low_complexity Low_complexity 1 28 0 259 215 315 32 chr1 47199059 47199186 -234994478 - MIR SINE MIR -3 259 99 1738 170 3 3 chr1 47199314 47199614 -234994050 + AluJo SINE Alu 1 300 -12 1186 107 6 0 chr1 47200058 47200236 -234993428 - AluY SINE Alu -2 309 131 1315 229 99 50 chr1 47201173 47201648 -234992016 - MLT1H LTR MaLR 0 549 52 297 297 77 46 chr1 47202372 47202618 -234991046 - L2 LINE L2 -274 2998 2754 401 147 101 92 chr1 47202687 47202796 -234990868 - MER103 DNA DNA -2 164 55 2471 34 3 0 chr1 47203528 47203819 -234989845 - L1PA5 LINE L1 0 6154 5863 1995 109 26 10 chr1 47203819 47204123 -234989541 - AluSc SINE Alu 0 309 1 249 122 85 37 chr1 47205080 47205162 -234988502 - L1ME4a LINE L1 0 6121 6036 526 246 41 8 chr1 47205508 47205630 -234988034 + L2 LINE L2 3187 3312 -1 758 248 100 55 chr1 47206721 47207172 -234986492 - MLT1H LTR MaLR -4 545 75 1591 209 56 26 chr1 47207690 47208068 -234985596 + MLT1B LTR MaLR 2 390 0 396 271 88 24 chr1 47208089 47208259 -234985405 - MIR SINE MIR -75 187 7 327 294 28 56 chr1 47208808 47208951 -234984713 - MIR SINE MIR -41 221 83 225 0 0 0 chr1 47209499 47209524 -234984140 + (TA)n Simple_repeat Simple_repeat 1 25 0 395 89 0 38 chr1 47209524 47209603 -234984061 + (GA)n Simple_repeat Simple_repeat 1 76 0 851 125 8 0 chr1 47209603 47209731 -234983933 - AluSq SINE Alu -30 283 155 599 249 76 30 chr1 47209736 47209933 -234983731 - LTR7 LTR ERV1 -7 443 238 1075 106 12 12 chr1 47210122 47210283 -234983381 - AluSq SINE Alu -152 161 1 1846 146 0 7 chr1 47210328 47210616 -234983048 - AluJb SINE Alu -24 288 3 376 224 13 13 chr1 47210703 47210779 -234982885 - MER91B DNA MER1_type -114 76 1 2270 85 3 3 chr1 47211118 47211423 -234982241 - AluSq SINE Alu -8 305 1 883 217 22 0 chr1 47211458 47211642 -234982022 - MER5A DNA MER1_type -1 188 1 215 343 50 43 chr1 47211800 47211940 -234981724 - MIR3 SINE MIR -17 191 51 642 297 102 23 chr1 47212339 47212682 -234980982 + L2 LINE L2 2944 3313 0 2255 108 0 0 chr1 47212726 47213033 -234980631 - AluSc SINE Alu 0 309 3 219 258 273 15 chr1 47213370 47213502 -234980162 + MIR SINE MIR 97 262 0 18807 50 11 0 chr1 47214824 47217063 -234976601 + HERV17 LTR ERV1 3757 6019 -2607 9356 48 11 3 chr1 47217055 47218164 -234975500 + HERV17 LTR ERV1 7509 8626 0 * 2751 50 6 0 chr1 47218164 47218486 -234975178 + LTR17 LTR ERV1 1 324 -456 242 29 29 0 chr1 47218486 47218521 -234975143 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 594 185 41 20 chr1 47218849 47218995 -234974669 + L1MC2 LINE L1 6196 6344 0 186 315 89 48 chr1 47219273 47219419 -234974245 + L3b LINE CR1 1340 1491 -92 690 269 31 41 chr1 47219438 47219728 -234973936 + L1ME3A LINE L1 5846 6132 -38 2249 118 50 19 chr1 47219734 47220098 -234973566 - THE1C LTR MaLR 0 375 1 270 0 0 0 chr1 47220599 47220629 -234973035 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 332 232 61 40 chr1 47220890 47220989 -234972675 - L1ME4a LINE L1 -12 6109 6009 275 347 61 24 chr1 47221165 47221378 -234972286 + L2 LINE L2 2813 3033 -239 986 244 32 20 chr1 47221438 47221688 -234971976 + MIR SINE MIR 9 261 -1 237 108 0 0 chr1 47221811 47221848 -234971816 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 200 210 0 16 chr1 47221930 47221992 -234971672 + GA-rich Low_complexity Low_complexity 3 63 0 684 273 39 47 chr1 47222856 47223112 -234970552 + MIR SINE MIR 9 262 0 445 258 36 30 chr1 47223213 47223380 -234970284 - MIR SINE MIR -1 261 94 241 265 108 59 chr1 47225607 47225709 -234967955 + MIR SINE MIR 34 140 -122 250 308 16 0 chr1 47226202 47226286 -234967378 + MIR SINE MIR 60 145 -63 938 351 34 2 chr1 47226291 47226738 -234966926 + MERVL LTR ERVL 3046 3506 -1979 1908 354 41 18 chr1 47226892 47227975 -234965689 + MERVL LTR ERVL 3751 4858 -796 1085 239 28 0 chr1 47228643 47228890 -234964774 + LTR16A1 LTR ERVL 187 440 -17 1180 218 25 78 chr1 47229037 47229582 -234964082 + MLT1G1 LTR MaLR 1 538 -4 906 200 9 64 chr1 47231016 47231181 -234962483 - MER20 DNA MER1_type 0 219 67 2412 65 0 0 chr1 47231181 47231489 -234962175 - AluY SINE Alu -3 308 1 906 200 9 64 chr1 47231489 47231543 -234962121 - MER20 DNA MER1_type -152 67 12 755 55 0 0 chr1 47231543 47231634 -234962030 - L1PA5 LINE L1 -258 5897 5807 1914 29 0 29 chr1 47231634 47231863 -234961801 + L1PA5 LINE L1 5921 6151 -3 566 179 41 32 chr1 47232152 47232275 -234961389 + MLT1C LTR MaLR 1 124 -343 15826 153 22 55 chr1 47232290 47234782 -234958882 + L1PA8A LINE L1 1 2574 -3557 2163 91 0 26 chr1 47234782 47235090 -234958574 - AluY SINE Alu -11 300 1 15826 153 22 55 chr1 47235090 47238401 -234955263 + L1PA8A LINE L1 2574 5545 -586 253 327 69 45 chr1 47238837 47239039 -234954625 + MIR SINE MIR 8 214 -48 276 316 129 36 chr1 47239169 47239308 -234954356 + L2 LINE L2 3161 3312 -1 339 316 18 9 chr1 47239652 47239766 -234953898 - MIR SINE MIR -130 132 18 1745 208 98 21 chr1 47239984 47240451 -234953213 - MLT1D LTR MaLR -2 503 1 242 320 26 0 chr1 47241626 47241704 -234951960 + MIR SINE MIR 83 162 -100 333 301 76 47 chr1 47241830 47242106 -234951558 + L1ME4a LINE L1 5599 5882 -239 2272 99 3 3 chr1 47242159 47242471 -234951193 + AluSx SINE Alu 1 312 0 253 379 23 29 chr1 47244363 47244537 -234949127 + MIR SINE MIR 20 192 -70 891 221 51 8 chr1 47245888 47246123 -234947541 - L1MC3 LINE L1 -21 7764 7520 1052 259 54 41 chr1 47246391 47246754 -234946910 + L1M4b LINE L1 11 504 -6355 * 2561 208 56 20 chr1 47246749 47247389 -234946275 + L1MB8 LINE L1 5511 6173 -5 378 0 0 0 chr1 47248290 47248332 -234945332 + (TA)n Simple_repeat Simple_repeat 1 42 0 30 59 0 0 chr1 47248374 47248425 -234945239 + AT_rich Low_complexity Low_complexity 1 51 0 251 241 12 72 chr1 47248572 47248655 -234945009 + MIR SINE MIR 160 237 -25 215 255 0 0 chr1 47248769 47248820 -234944844 - MIR SINE MIR -108 154 104 21 0 0 0 chr1 47248979 47249000 -234944664 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 47249231 47249260 -234944404 + AT_rich Low_complexity Low_complexity 1 29 0 474 318 123 36 chr1 47249823 47250213 -234943451 + MLT1J1 LTR MaLR 15 438 -8 1525 215 96 108 chr1 47252847 47253795 -234939869 + LTR1B LTR ERV1 1 1019 -1 308 289 104 35 chr1 47255012 47255185 -234938479 - MIR SINE MIR -29 233 49 544 297 77 102 chr1 47255298 47255739 -234937925 - LTR67 LTR ERVL -12 545 116 241 315 81 9 chr1 47256230 47256341 -234937323 - L2 LINE L2 -2 3311 3193 360 297 103 19 chr1 47256578 47256733 -234936931 + MIR SINE MIR 60 227 -35 1808 282 34 30 chr1 47257648 47258079 -234935585 - L1MEc LINE L1 -5515 881 445 1845 151 13 0 chr1 47258079 47258377 -234935287 - AluSx SINE Alu -7 305 4 1808 282 34 30 chr1 47258377 47258584 -234935080 - L1MEc LINE L1 -5951 445 240 1797 224 25 43 chr1 47258586 47259024 -234934640 + MLT2B3 LTR ERVL 1 430 -124 1306 284 61 33 chr1 47259042 47260258 -234933406 - L1MEc LINE L1 -3379 2750 1533 1473 143 74 0 chr1 47260258 47260489 -234933175 + Tigger3b DNA MER2_type 1 248 -983 1697 225 40 30 chr1 47260576 47260981 -234932683 + LTR2 LTR ERV1 41 449 0 * 5092 135 39 16 chr1 47260981 47261923 -234931741 + Tigger3b DNA MER2_type 249 1212 -19 21 36 0 0 chr1 47262556 47262584 -234931080 + AT_rich Low_complexity Low_complexity 1 28 0 4283 149 18 7 chr1 47262803 47263543 -234930121 - L1MC1 LINE L1 -1 6332 5585 321 304 52 52 chr1 47263745 47263936 -234929728 - L1MEc LINE L1 -4869 1250 1060 266 251 27 104 chr1 47263963 47264222 -234929442 - L1MEc LINE L1 -5140 979 741 190 300 0 70 chr1 47266347 47266447 -234927217 - L2 LINE L2 -80 3233 3141 805 294 57 64 chr1 47267003 47267604 -234926060 - L2 LINE L2 -12 3301 2650 183 292 106 80 chr1 47267754 47267867 -234925797 - L2 LINE L2 -577 2737 2622 341 386 14 0 chr1 47267952 47268092 -234925572 - MLT1J LTR MaLR -110 401 260 24 32 0 0 chr1 47268308 47268339 -234925325 + AT_rich Low_complexity Low_complexity 1 31 0 1751 176 206 16 chr1 47268598 47269098 -234924566 + LTR49 LTR ERV1 1 595 0 392 200 0 0 chr1 47269952 47270012 -234923652 - MER2 DNA MER2_type -2 343 284 24 0 0 0 chr1 47270219 47270243 -234923421 + AT_rich Low_complexity Low_complexity 1 24 0 608 182 33 8 chr1 47271169 47271290 -234922374 - MER5A DNA MER1_type 0 189 66 1984 141 7 0 chr1 47271290 47271594 -234922070 - AluSx SINE Alu -6 306 1 319 308 72 67 chr1 47271598 47271793 -234921871 + L2 LINE L2 3116 3311 -2 195 100 0 0 chr1 47273755 47273785 -234919879 + (CA)n Simple_repeat Simple_repeat 1 30 0 274 203 0 17 chr1 47273992 47274051 -234919613 - MSTA LTR MaLR 0 428 371 1903 260 126 37 chr1 47274171 47274744 -234918920 - L1ME2 LINE L1 -182 5982 5461 1940 37 0 12 chr1 47274744 47274988 -234918676 - L1PA5 LINE L1 0 6154 5914 1903 260 126 37 chr1 47274988 47276152 -234917512 - L1ME2 LINE L1 -703 5461 4114 551 195 34 105 chr1 47276183 47276450 -234917214 - L1ME2 LINE L1 -2228 3918 3671 22 0 0 0 chr1 47276627 47276649 -234917015 + AT_rich Low_complexity Low_complexity 1 22 0 887 201 6 0 chr1 47276655 47276814 -234916850 - AluSg/x SINE Alu -29 281 122 227 284 0 0 chr1 47278044 47278111 -234915553 + (TA)n Simple_repeat Simple_repeat 1 67 0 243 343 75 14 chr1 47278129 47278275 -234915389 + MER112 DNA MER1_type 105 259 -1 385 283 78 58 chr1 47278404 47278662 -234915002 + Charlie2 DNA MER1_type 83 345 -2517 818 249 92 66 chr1 47278824 47279042 -234914622 - Charlie2a DNA MER1_type -386 2476 2265 1479 185 46 0 chr1 47279042 47279323 -234914341 - AluJo SINE Alu -18 294 1 818 249 92 66 chr1 47279323 47279738 -234913926 - Charlie2a DNA MER1_type -597 2265 1827 416 222 90 21 chr1 47279844 47279988 -234913676 - Charlie2a DNA MER1_type -1288 1574 1421 254 280 114 8 chr1 47280078 47280314 -234913350 - L1ME2 LINE L1 -3131 3015 2755 1478 213 66 17 chr1 47280532 47280880 -234912784 - MLT1A1 LTR MaLR 0 365 1 468 182 0 0 chr1 47281609 47281697 -234911967 + L1MA8 LINE L1 5866 5953 -338 446 278 68 47 chr1 47281992 47282183 -234911481 - MIR SINE MIR -65 197 3 204 358 66 75 chr1 47282402 47282737 -234910927 - L2 LINE L2 -1 3271 2940 606 354 4 34 chr1 47282742 47283005 -234910659 + MIR SINE MIR 8 262 0 693 221 27 0 chr1 47283159 47283308 -234910356 + L1MDa LINE L1 26 178 -6362 2035 189 57 5 chr1 47283312 47283719 -234909945 + MSTA LTR MaLR 1 428 0 7146 221 34 8 chr1 47283719 47285329 -234908335 + MSTA-int LTR MaLR 1 1651 0 1409 232 180 3 chr1 47285329 47285691 -234907973 + MSTB LTR MaLR 1 426 0 341 202 17 118 chr1 47285693 47285812 -234907852 + L1MDa LINE L1 180 286 -6254 4735 231 49 15 chr1 47285836 47286811 -234906853 + L1PA13 LINE L1 1 1008 -5779 7499 231 15 6 chr1 47286916 47288982 -234904682 + L1PA13 LINE L1 1955 4051 -2746 259 169 0 51 chr1 47289012 47289071 -234904593 + L1PA13 LINE L1 3996 4051 -2746 6081 181 17 26 chr1 47289083 47290368 -234903296 + L1P LINE L1 3194 4466 -1680 * 7392 166 8 41 chr1 47290367 47291766 -234901898 - THE1C-int LTR MaLR -224 1356 4 1428 183 78 36 chr1 47291769 47292129 -234901535 - THE1C LTR MaLR 0 375 1 509 254 8 0 chr1 47292131 47292249 -234901415 - MLT1A2 LTR MaLR -252 122 4 6288 247 69 39 chr1 47292283 47293180 -234900484 + L1MDa LINE L1 364 1233 -5307 2223 138 8 13 chr1 47293180 47293557 -234900107 - THE1C LTR MaLR 0 375 1 6288 247 69 39 chr1 47293557 47294589 -234899075 + L1MDa LINE L1 1233 2392 -4148 2746 148 14 18 chr1 47294589 47295094 -234898570 + L1MA8 LINE L1 5784 6286 -5 6288 247 69 39 chr1 47295094 47295742 -234897922 + L1MDa LINE L1 2392 3019 -3521 269 172 17 0 chr1 47295750 47295808 -234897856 + L1MD1 LINE L1 1888 1946 -4594 2074 269 40 19 chr1 47295896 47296800 -234896864 + L1MD1 LINE L1 3039 3961 -2579 1903 182 48 42 chr1 47296832 47297372 -234896292 - MLT2A2 LTR ERVL 0 554 1 4084 266 62 13 chr1 47297372 47299902 -234893762 + L1MD1 LINE L1 3973 6636 0 2147 116 0 26 chr1 47300000 47300311 -234893353 - AluSx SINE Alu -7 305 3 353 328 153 6 chr1 47301011 47301188 -234892476 + MIR SINE MIR 1 203 -59 340 288 179 14 chr1 47302174 47302386 -234891278 + MIR SINE MIR 6 252 -10 314 284 64 18 chr1 47302372 47302481 -234891183 - L2 LINE L2 -8 3305 3192 * 217 137 98 20 chr1 47302536 47302587 -234891077 + L2 LINE L2 3255 3309 -4 186 103 0 0 chr1 47303875 47303904 -234889760 + (CA)n Simple_repeat Simple_repeat 2 30 0 921 222 21 0 chr1 47304028 47304217 -234889447 - ERVL LTR ERVL -371 5393 5201 24 0 0 0 chr1 47305040 47305064 -234888600 + AT_rich Low_complexity Low_complexity 1 24 0 1450 265 147 41 chr1 47305083 47306136 -234887528 - Charlie7 DNA MER1_type -304 2308 1144 227 180 80 0 chr1 47306541 47306591 -234887073 + HsTC2 DNA Tc2 772 825 -1073 551 237 78 23 chr1 47306701 47307034 -234886630 - L1MB8 LINE L1 -7 6171 5782 233 238 95 0 chr1 47307225 47307288 -234886376 + L1MC/D LINE L1 5529 5597 -736 363 23 0 0 chr1 47307589 47307633 -234886031 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 242 347 0 0 chr1 47308625 47308697 -234884967 - MIR SINE MIR -18 244 173 1081 168 1 6 chr1 47309518 47309705 -234883959 - MLT1A2 LTR MaLR 0 626 189 856 152 0 7 chr1 47309801 47309952 -234883712 - L1PA7 LINE L1 -5 6149 6000 8986 216 28 27 chr1 47310094 47313363 -234880301 - L1PA12 LINE L1 -3330 4254 191 10862 173 21 4 chr1 47313470 47315509 -234878155 - L1P LINE L1 -1617 4529 2456 233 206 0 16 chr1 47315509 47315572 -234878092 + (TG)n Simple_repeat Simple_repeat 1 62 0 1572 106 9 4 chr1 47315601 47315827 -234877837 - AluSq SINE Alu -19 294 68 341 200 0 27 chr1 47315927 47316002 -234877662 - Tigger1 DNA MER2_type -2343 75 3 946 292 13 39 chr1 47316071 47316379 -234877285 + MLT1I LTR MaLR 102 401 -8 357 43 0 0 chr1 47319109 47319156 -234874508 + (TATG)n Simple_repeat Simple_repeat 2 48 0 970 217 32 14 chr1 47319322 47319603 -234874061 + L1MB7 LINE L1 5107 5392 -754 903 127 38 6 chr1 47320241 47320399 -234873265 + L1PA16 LINE L1 5985 6147 -19 1693 243 30 2 chr1 47320638 47321111 -234872553 + L1MC3 LINE L1 4849 5334 -812 3195 228 117 25 chr1 47321116 47322154 -234871510 + L1MC3 LINE L1 5432 6564 -1221 1209 239 88 37 chr1 47322291 47322668 -234870996 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr1 47322809 47322837 -234870827 + AT_rich Low_complexity Low_complexity 1 28 0 182 71 107 18 chr1 47323116 47323172 -234870492 + (TTAAA)n Simple_repeat Simple_repeat 3 63 0 227 245 32 53 chr1 47323632 47323726 -234869938 - MLT1J1 LTR MaLR -354 92 1 293 300 145 29 chr1 47323785 47323940 -234869724 - MIR SINE MIR -57 205 34 198 0 0 0 chr1 47324074 47324096 -234869568 + (A)n Simple_repeat Simple_repeat 1 22 0 1868 156 68 27 chr1 47374478 47374844 -234818820 - MLT1B LTR MaLR -1 389 9 192 77 0 0 chr1 47375678 47375704 -234817960 + (CAGG)n Simple_repeat Simple_repeat 2 27 0 652 235 114 0 chr1 47376217 47376383 -234817281 + MER5A DNA MER1_type 5 189 0 357 266 43 0 chr1 47376554 47376648 -234817016 - MIR SINE MIR -112 150 53 2701 220 59 5 chr1 47377218 47377882 -234815782 + L1MB7 LINE L1 5484 6183 -1 259 275 69 46 chr1 47378686 47378817 -234814847 + MIR SINE MIR 59 192 -70 351 214 32 117 chr1 47379760 47379914 -234813750 + L3 LINE CR1 561 701 -876 284 203 119 0 chr1 47379975 47380034 -234813630 + L2 LINE L2 3243 3308 -5 1724 131 91 13 chr1 47380079 47380377 -234813287 - MER1B DNA MER1_type 0 339 19 1435 181 32 32 chr1 47381156 47381438 -234812226 - AluJo SINE Alu -30 282 1 507 302 150 43 chr1 47381980 47382200 -234811464 - L2 LINE L2 -40 3273 3078 249 108 0 0 chr1 47382200 47382237 -234811427 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 507 302 150 43 chr1 47382237 47382463 -234811201 - L2 LINE L2 -235 3078 2781 1702 149 61 38 chr1 47382476 47382818 -234810846 - MLT1A1 LTR MaLR -2 363 14 285 299 36 60 chr1 47383177 47383344 -234810320 + MIR3 SINE MIR 28 190 -18 2438 67 0 0 chr1 47383605 47383904 -234809760 - AluY SINE Alu -12 299 1 489 257 44 7 chr1 47384214 47384350 -234809314 - L2 LINE L2 0 3313 3173 5979 150 39 28 chr1 47384350 47384454 -234809210 + L1MA8 LINE L1 4530 4631 -1660 669 73 0 31 chr1 47384454 47384550 -234809114 + L1PA8 LINE L1 6079 6171 -1 5979 150 39 28 chr1 47384550 47384874 -234808790 + L1MA8 LINE L1 4631 4950 -1341 2096 108 108 17 chr1 47384874 47385218 -234808446 - THE1C LTR MaLR 0 375 1 5979 150 39 28 chr1 47385218 47386538 -234807126 + L1MA8 LINE L1 4950 6288 -3 393 345 50 0 chr1 47386549 47386749 -234806915 - L2 LINE L2 -137 3176 2967 5468 33 0 0 chr1 47386888 47387532 -234806132 - L1PA3 LINE L1 -3797 2349 1706 * 26145 22 1 0 chr1 47387531 47391229 -234802435 + L1PA3 LINE L1 2353 6055 -100 238 265 108 59 chr1 47393384 47393486 -234800178 + MIR SINE MIR 34 140 -122 246 308 16 0 chr1 47393979 47394063 -234799601 + MIR SINE MIR 60 145 -63 1056 319 43 11 chr1 47394069 47394514 -234799150 + ERVL LTR ERVL 3086 3544 -2220 1800 347 43 20 chr1 47394669 47395752 -234797912 + ERVL LTR ERVL 3751 4858 -796 1082 239 28 0 chr1 47396419 47396666 -234796998 + LTR16A1 LTR ERVL 187 440 -17 1166 218 25 78 chr1 47396813 47397358 -234796306 + MLT1G1 LTR MaLR 1 538 -4 892 193 9 76 chr1 47398791 47398959 -234794705 - MER20 DNA MER1_type 0 219 68 2530 59 0 0 chr1 47398959 47399264 -234794400 - AluY SINE Alu -6 305 1 892 193 9 76 chr1 47399264 47399318 -234794346 - MER20 DNA MER1_type -151 68 12 762 55 0 0 chr1 47399318 47399409 -234794255 - L1PA5 LINE L1 -258 5897 5807 1991 34 0 29 chr1 47399409 47399638 -234794026 + L1PA5 LINE L1 5921 6151 -3 572 179 41 32 chr1 47399927 47400050 -234793614 + MLT1C LTR MaLR 1 124 -343 26253 157 24 42 chr1 47400065 47402426 -234791238 + L1PA10 LINE L1 1 2403 -3765 2258 91 0 26 chr1 47402426 47402733 -234790931 - AluY SINE Alu -12 299 1 26253 157 24 42 chr1 47402733 47406640 -234787024 + L1PA10 LINE L1 2403 6145 -23 1017 177 126 59 chr1 47406640 47406948 -234786716 + MLT1C LTR MaLR 93 416 -51 217 364 42 14 chr1 47407257 47407400 -234786264 + L2 LINE L2 2731 2877 -437 1590 172 31 89 chr1 47407683 47408066 -234785598 + MLT1A1 LTR MaLR 5 365 0 208 318 34 0 chr1 47408107 47408195 -234785469 + L2 LINE L2 2969 3059 -213 543 299 12 117 chr1 47408335 47408676 -234784988 - L2 LINE L2 -8 3264 2960 186 214 48 0 chr1 47408718 47408760 -234784904 + L2 LINE L2 3219 3262 -10 197 369 64 37 chr1 47408910 47408999 -234784665 - L2 LINE L2 -251 3021 2936 306 0 0 0 chr1 47408999 47409033 -234784631 + (CA)n Simple_repeat Simple_repeat 1 34 0 197 369 64 37 chr1 47409033 47409130 -234784534 - L2 LINE L2 -336 2936 2830 1202 207 123 133 chr1 47409132 47409507 -234784157 - MLT1F1 LTR MaLR 0 567 197 189 74 0 0 chr1 47409507 47409534 -234784130 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 1202 207 123 133 chr1 47409534 47409669 -234783995 - MLT1F1 LTR MaLR -370 197 62 604 283 146 52 chr1 47410386 47410445 -234783219 + L2 LINE L2 2811 2863 -409 342 0 0 0 chr1 47410445 47410483 -234783181 + (CA)n Simple_repeat Simple_repeat 2 39 0 604 283 146 52 chr1 47410483 47410808 -234782856 + L2 LINE L2 2863 3231 -41 1123 253 16 68 chr1 47410919 47411302 -234782362 + LTR16A LTR ERVL 83 445 -5 200 263 88 62 chr1 47411368 47411448 -234782216 + L2 LINE L2 3191 3272 0 14455 22 0 0 chr1 47412671 47415029 -234778635 + L1PA3 LINE L1 3797 6155 0 889 259 124 71 chr1 47415047 47415239 -234778425 + L1MEd LINE L1 614 794 -5516 2164 158 124 16 chr1 47415239 47415625 -234778039 + MSTA LTR MaLR 1 428 0 889 259 124 71 chr1 47415625 47416468 -234777196 + L1MEd LINE L1 794 1731 -4579 1226 231 71 91 chr1 47416818 47416979 -234776685 - MLT1G LTR MaLR -18 572 409 1595 183 21 7 chr1 47416979 47417268 -234776396 + AluJo SINE Alu 3 295 -17 1226 231 71 91 chr1 47417268 47417536 -234776128 - MLT1G LTR MaLR -181 409 160 2725 174 62 19 chr1 47417536 47418020 -234775644 - MLT1D LTR MaLR 0 505 1 1226 231 71 91 chr1 47418020 47418176 -234775488 - MLT1G LTR MaLR -430 160 2 2438 104 0 0 chr1 47419749 47420056 -234773608 - AluSc SINE Alu -2 307 1 262 275 44 0 chr1 47420063 47420154 -234773510 - L1ME4a LINE L1 -2 6119 6025 945 268 52 98 chr1 47420830 47421371 -234772293 - MLT1K LTR MaLR -2 586 71 632 267 205 0 chr1 47421778 47421988 -234771676 - MIR SINE MIR -6 256 4 336 272 19 39 chr1 47422404 47422507 -234771157 - L2 LINE L2 -8 3305 3205 37 0 0 0 chr1 47422948 47422985 -234770679 + AT_rich Low_complexity Low_complexity 1 37 0 321 167 125 10 chr1 47423416 47423512 -234770152 + MER5B DNA MER1_type 6 112 -66 21 57 0 0 chr1 47423885 47423920 -234769744 + AT_rich Low_complexity Low_complexity 1 35 0 2234 105 3 10 chr1 47423926 47424232 -234769432 - AluSx SINE Alu -4 308 5 866 233 17 0 chr1 47425563 47425735 -234767929 + MER5A DNA MER1_type 1 175 -14 331 190 209 44 chr1 47425872 47426030 -234767634 + L2 LINE L2 2878 3061 -252 183 129 0 0 chr1 47426176 47426207 -234767457 + (CA)n Simple_repeat Simple_repeat 2 32 0 238 227 0 93 chr1 47426208 47426305 -234767359 - L1MC4 LINE L1 -1339 6703 6616 2763 159 33 27 chr1 47427206 47427720 -234765944 - Charlie1b DNA MER1_type 0 523 7 226 291 85 57 chr1 47427747 47427888 -234765776 - MIR SINE MIR -68 140 5 499 290 37 33 chr1 47429386 47429600 -234764064 - HAL1 LINE L1 -698 1809 1595 426 279 102 24 chr1 47429719 47430015 -234763649 + MLT1L LTR MaLR 169 522 -93 341 293 48 24 chr1 47430023 47430190 -234763474 - HAL1 LINE L1 -910 1597 1427 429 262 199 22 chr1 47430500 47430767 -234762897 - HAL1 LINE L1 -1077 1430 1117 352 146 18 0 chr1 47430819 47430874 -234762790 - AluJo SINE Alu -21 281 226 1289 158 0 0 chr1 47430874 47431064 -234762600 - AluJo SINE Alu -122 190 1 298 239 109 0 chr1 47431135 47431227 -234762437 - HAL1 LINE L1 -1564 943 842 227 250 0 56 chr1 47433055 47433127 -234760537 + HsTC2 DNA Tc2 1 68 -1830 1747 177 52 35 chr1 47433149 47433311 -234760353 + MLT1A2 LTR MaLR 1 159 -215 1802 151 4 4 chr1 47433311 47433590 -234760074 + AluSx SINE Alu 33 311 -1 1747 177 52 35 chr1 47433590 47433795 -234759869 + MLT1A2 LTR MaLR 159 374 0 2167 128 40 77 chr1 47433852 47434257 -234759407 - MLT1B LTR MaLR 0 390 1 532 244 112 112 chr1 47437285 47437974 -234755690 - L1ME4a LINE L1 -4 6100 5407 992 191 32 9 chr1 47438186 47438406 -234755258 - L1ME3A LINE L1 -10 6160 5936 5627 252 58 25 chr1 47438408 47439448 -234754216 - L1ME3A LINE L1 -277 5893 4888 1633 211 133 43 chr1 47439448 47439959 -234753705 + MER34B LTR ERV1 5 561 -4 5627 252 58 25 chr1 47439959 47441393 -234752271 - L1ME3A LINE L1 -1282 4888 3338 2324 278 146 25 chr1 47441513 47442634 -234751030 - L2 LINE L2 -6 3307 2054 249 250 0 38 chr1 47442787 47442867 -234750797 - MLT1K LTR MaLR -130 458 382 194 267 67 67 chr1 47443393 47443543 -234750121 + L2 LINE L2 3161 3310 -3 326 226 0 0 chr1 47443745 47443798 -234749866 - L2 LINE L2 -64 3208 3156 1855 132 86 0 chr1 47443899 47444179 -234749485 - AluSx SINE Alu -8 304 1 2623 120 31 5 chr1 47444317 47444699 -234748965 + MSTA LTR MaLR 1 392 -36 651 288 70 19 chr1 47444701 47445014 -234748650 - L1ME4a LINE L1 -1146 4983 4655 265 271 94 0 chr1 47445017 47445113 -234748551 - L1ME4a LINE L1 -3597 2532 2428 241 269 185 0 chr1 47445140 47445270 -234748394 - L1ME4a LINE L1 -3756 2373 2220 812 260 164 65 chr1 47445530 47446560 -234747104 - L1MEd LINE L1 -4579 1731 568 359 322 114 88 chr1 47446565 47446660 -234747004 - L1MEd LINE L1 -5537 582 491 1947 139 10 7 chr1 47446660 47446961 -234746703 + AluJb SINE Alu 1 302 -10 359 322 114 88 chr1 47446961 47447287 -234746377 - L1MEd LINE L1 -5628 491 150 21 36 0 0 chr1 47447307 47447335 -234746329 + AT_rich Low_complexity Low_complexity 1 28 0 1676 261 58 23 chr1 47448027 47448505 -234745159 + L2 LINE L2 2444 2965 -348 3058 57 11 0 chr1 47448505 47448856 -234744808 - THE1A LTR MaLR 0 355 1 1676 261 58 23 chr1 47448856 47449201 -234744463 + L2 LINE L2 2965 3296 -17 1128 269 48 21 chr1 47449659 47449990 -234743674 - MER102b DNA MER1_type -1 340 1 346 187 40 0 chr1 47450271 47450346 -234743318 + MIR SINE MIR 103 180 -82 1420 89 133 0 chr1 47451035 47451238 -234742426 - MER30 DNA MER1_type 0 230 1 1057 241 9 9 chr1 47452321 47452537 -234741127 - MER20 DNA MER1_type -2 217 2 252 333 118 20 chr1 47453619 47453823 -234739841 + L2 LINE L2 2538 2761 -553 276 267 0 17 chr1 47453988 47454048 -234739616 + MIR3 SINE MIR 143 201 -7 368 331 24 8 chr1 47454464 47454591 -234739073 - MIR3 SINE MIR -43 165 37 573 232 216 6 chr1 47454696 47454877 -234738787 + MIR SINE MIR 2 220 -42 23 0 0 0 chr1 47455145 47455168 -234738496 + AT_rich Low_complexity Low_complexity 1 23 0 310 277 176 57 chr1 47456468 47456764 -234736900 - L1M2 LINE L1 -5742 1107 777 2956 146 58 10 chr1 47457567 47457753 -234735911 + L1MB7 LINE L1 5620 5796 -388 2504 64 0 13 chr1 47457753 47458066 -234735598 + AluY SINE Alu 1 309 -2 2956 146 58 10 chr1 47458066 47458400 -234735264 + L1MB7 LINE L1 5796 6165 -19 29 0 0 0 chr1 47458423 47458452 -234735212 + AT_rich Low_complexity Low_complexity 1 29 0 181 292 282 10 chr1 47458836 47459141 -234734523 + L2 LINE L2 2306 2693 -621 181 382 73 13 chr1 47459567 47459800 -234733864 + L2 LINE L2 2728 2974 -340 286 265 15 0 chr1 47460435 47460503 -234733161 + MIR SINE MIR 37 105 -103 649 291 99 76 chr1 47460508 47461074 -234732590 + MLT1K LTR MaLR 3 581 -7 2173 104 7 0 chr1 47462758 47463055 -234730609 + AluSx SINE Alu 1 299 -13 234 0 0 0 chr1 47463055 47463081 -234730583 + (TA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr1 47463716 47463743 -234729921 + AT_rich Low_complexity Low_complexity 1 27 0 706 305 147 13 chr1 47464882 47465331 -234728333 - LTR33 LTR ERVL -3 518 10 536 294 62 12 chr1 47465705 47465972 -234727692 - ERVL LTR ERVL -281 5246 4910 474 321 50 14 chr1 47466011 47466232 -234727432 - ERVL LTR ERVL -888 4876 4648 378 286 49 59 chr1 47466240 47466443 -234727221 + MLT1J1 LTR MaLR 246 446 0 955 241 40 36 chr1 47466862 47467136 -234726528 + L1MB5 LINE L1 5899 6173 -1 565 207 75 94 chr1 47467770 47467983 -234725681 + LTR67 LTR ERVL 340 548 -9 225 0 0 0 chr1 47468094 47468119 -234725545 + (TG)n Simple_repeat Simple_repeat 2 26 0 275 202 172 40 chr1 47468177 47468276 -234725388 + MIR3 SINE MIR 5 116 -92 924 239 60 0 chr1 47468572 47468773 -234724891 - MIR SINE MIR -22 240 28 234 0 0 0 chr1 47468781 47468807 -234724857 + (TG)n Simple_repeat Simple_repeat 1 26 0 385 160 13 0 chr1 47468807 47468882 -234724782 - L1MB4 LINE L1 -14 6166 6091 221 324 81 85 chr1 47469098 47469370 -234724294 - L3b LINE CR1 -45 1538 1268 191 267 67 27 chr1 47469377 47469452 -234724212 - MIR SINE MIR 0 262 185 197 246 66 33 chr1 47469519 47469580 -234724084 - L2 LINE L2 -2 3270 3208 309 296 136 40 chr1 47469909 47470085 -234723579 - L2 LINE L2 -3 3269 3077 840 233 133 16 chr1 47470924 47471317 -234722347 + LTR33 LTR ERVL 47 513 -8 855 256 95 46 chr1 47471537 47472016 -234721648 + MLT1K LTR MaLR 5 588 0 315 295 10 36 chr1 47472181 47472298 -234721366 - MIR SINE MIR -90 118 2 241 246 0 0 chr1 47472298 47472355 -234721309 + (CAT)n Simple_repeat Simple_repeat 3 59 0 2593 62 0 0 chr1 47473753 47474061 -234719603 + AluY SINE Alu 1 308 -3 7008 102 20 4 chr1 47474174 47476013 -234717651 - L1PA10 LINE L1 0 6168 4301 720 299 27 31 chr1 47476188 47476449 -234717215 - MIR SINE MIR -1 261 2 301 91 0 23 chr1 47476589 47476633 -234717031 + U6 snRNA snRNA 1 43 -64 22 70 0 0 chr1 47476697 47476740 -234716924 + AT_rich Low_complexity Low_complexity 1 43 0 1656 182 14 3 chr1 47476747 47477038 -234716626 + AluJo SINE Alu 1 294 -18 297 0 0 0 chr1 47477733 47477766 -234715898 + (CA)n Simple_repeat Simple_repeat 1 33 0 2292 90 0 10 chr1 47478082 47478381 -234715283 + AluY SINE Alu 1 296 -15 342 305 49 40 chr1 47478383 47478609 -234715055 + L1ME3A LINE L1 934 1161 -4958 634 305 60 26 chr1 47478722 47479073 -234714591 + HAL1 LINE L1 1403 1765 -742 2349 89 0 0 chr1 47479152 47479466 -234714198 + AluY SINE Alu 1 314 0 2179 121 0 0 chr1 47479583 47479873 -234713791 + AluY SINE Alu 1 290 -21 315 299 14 14 chr1 47480005 47480152 -234713512 + L1ME3A LINE L1 2116 2262 -3867 41425 66 12 2 chr1 47480155 47486259 -234707405 + L1PA4 LINE L1 1 6154 -1 298 302 44 16 chr1 47486339 47486591 -234707073 + L1ME3A LINE L1 2345 2603 -3526 439 228 14 145 chr1 47486621 47486823 -234706841 + MER112 DNA MER1_type 8 162 -98 2538 99 37 6 chr1 47486823 47487175 -234706489 + L1PA10 LINE L1 5801 6163 -5 439 228 14 145 chr1 47487175 47487261 -234706403 + MER112 DNA MER1_type 162 258 -2 1727 290 86 29 chr1 47487313 47487960 -234705704 + L1ME3A LINE L1 3999 4608 -1545 2114 93 10 7 chr1 47487960 47488251 -234705413 + AluSc SINE Alu 1 290 -19 231 0 33 0 chr1 47488251 47488281 -234705383 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1727 290 86 29 chr1 47488281 47489471 -234704193 + L1ME3A LINE L1 4608 5945 -208 306 253 74 8 chr1 47490126 47490347 -234703317 - L1ME4a LINE L1 -181 5940 5699 24 53 0 0 chr1 47490881 47490919 -234702745 + AT_rich Low_complexity Low_complexity 1 38 0 247 321 54 18 chr1 47491050 47491274 -234702390 + L1MC/D LINE L1 5678 5909 -1899 10066 210 58 16 chr1 47492084 47495259 -234698405 - L1MC/D LINE L1 -719 5894 2574 13552 171 39 14 chr1 47495322 47498689 -234694975 - L1MA4A LINE L1 -119 6886 3404 2863 58 0 0 chr1 47498689 47499045 -234694619 + L1PA5 LINE L1 5792 6153 -1 13552 171 39 14 chr1 47499045 47499578 -234694086 - L1MA4A LINE L1 -3601 3404 2885 376 161 25 0 chr1 47499580 47499661 -234694003 + (TA)n Simple_repeat Simple_repeat 2 84 0 2232 121 0 0 chr1 47499661 47499950 -234693714 - AluSx SINE Alu -23 289 1 11016 170 35 116 chr1 47499950 47500749 -234692915 - L1MA4A LINE L1 -3957 2892 2031 207 0 0 0 chr1 47500749 47500772 -234692892 + (CTATT)n Simple_repeat Simple_repeat 3 25 0 11016 170 35 116 chr1 47500772 47501483 -234692181 - L1MA4A LINE L1 -4818 2031 1265 1732 180 143 11 chr1 47501483 47501861 -234691803 - MSTA LTR MaLR 0 428 1 11016 170 35 116 chr1 47501861 47502567 -234691097 - L1MA4A LINE L1 -5584 1265 998 183 80 0 0 chr1 47502567 47502592 -234691072 + (CAG)n Simple_repeat Simple_repeat 3 27 0 11016 170 35 116 chr1 47502592 47503513 -234690151 - L1MA4A LINE L1 -5851 998 5 11035 143 58 60 chr1 47503514 47506038 -234687626 - L1MCa LINE L1 -3948 2478 20 301 258 15 0 chr1 47507415 47507481 -234686183 + MER69 DNA AcHobo 1 67 -110 1054 16 0 0 chr1 47507643 47507765 -234685899 - AluYb8 SINE Alu 0 318 197 302 216 69 60 chr1 47507766 47507882 -234685782 + MER69 DNA AcHobo 2391 2507 -19 332 285 66 56 chr1 47508291 47508610 -234685054 - L1ME4a LINE L1 -11 6110 5789 983 225 123 3 chr1 47508610 47508903 -234684761 - MER58B DNA MER1_type -10 331 4 269 258 31 0 chr1 47508906 47509003 -234684661 - L1ME4a LINE L1 -326 5795 5696 636 295 57 40 chr1 47510052 47510726 -234682938 + L1MEc LINE L1 792 1488 -4908 1785 243 70 33 chr1 47510726 47511269 -234682395 + MLT1F1 LTR MaLR 5 567 0 636 295 57 40 chr1 47511269 47511549 -234682115 + L1MEc LINE L1 1488 1762 -4634 578 279 34 49 chr1 47511593 47512059 -234681605 + L1MEc LINE L1 1874 2332 -4064 1645 281 90 20 chr1 47512068 47512951 -234680713 + L1MEc LINE L1 2719 3698 -2517 261 0 0 0 chr1 47512951 47512980 -234680684 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1645 281 90 20 chr1 47512980 47513212 -234680452 + L1MEc LINE L1 3698 3912 -2303 2753 121 7 2 chr1 47513224 47513647 -234680017 - MSTB1 LTR MaLR -7 425 1 4202 171 69 54 chr1 47513647 47514603 -234679061 - MSTB1-int LTR MaLR 0 1651 682 2171 152 18 23 chr1 47514611 47514999 -234678665 - MSTB LTR MaLR 0 426 41 27 0 0 0 chr1 47514999 47515026 -234678638 + AT_rich Low_complexity Low_complexity 1 27 0 7927 30 0 4 chr1 47515038 47516759 -234676905 - L1PA3 LINE L1 0 6155 4439 267 83 0 0 chr1 47516759 47516795 -234676869 - MSTB LTR MaLR -390 36 1 3215 183 31 2 chr1 47516804 47517449 -234676215 - MSTB1-int LTR MaLR -983 668 5 2238 136 40 54 chr1 47517464 47517890 -234675774 - MSTB1 LTR MaLR -12 420 1 645 312 52 21 chr1 47517892 47518315 -234675349 + L1MEc LINE L1 3915 4350 -1865 * 1261 254 12 51 chr1 47518309 47518462 -234675202 + L1M4 LINE L1 10 167 -6375 261 0 0 0 chr1 47518462 47518491 -234675173 + (CA)n Simple_repeat Simple_repeat 2 30 0 1261 254 12 51 chr1 47518491 47518746 -234674918 + L1M4 LINE L1 167 402 -6140 * 2993 93 16 2 chr1 47518744 47519183 -234674481 + L1PA10 LINE L1 5682 6126 -42 1224 72 0 0 chr1 47519167 47519333 -234674331 + L1P4 LINE L1 5412 5577 -591 * 315 102 0 17 chr1 47519333 47519391 -234674273 + L1PA10 LINE L1 6111 6168 0 4016 148 28 11 chr1 47519421 47520172 -234673492 + L1MA10 LINE L1 5568 6331 -3 5557 205 39 17 chr1 47520207 47521766 -234671898 + L1M4 LINE L1 3725 5318 -1326 448 157 74 0 chr1 47521764 47521872 -234671792 + L1MB7 LINE L1 5981 6096 -88 * 428 83 0 0 chr1 47521937 47522006 -234671658 + L1MB7 LINE L1 6103 6172 -2 684 162 17 89 chr1 47522017 47522196 -234671468 + L1MB3 LINE L1 6015 6180 -3 1387 223 82 36 chr1 47522235 47522319 -234671345 + L1ME3A LINE L1 4280 4359 -1787 964 16 0 16 chr1 47522319 47522441 -234671223 + L1PA4 LINE L1 6036 6155 0 1387 223 82 36 chr1 47522441 47522962 -234670702 + L1ME3A LINE L1 4359 4913 -1233 2632 259 35 22 chr1 47522987 47524000 -234669664 + L1ME3A LINE L1 5127 6161 -9 180 0 0 0 chr1 47524421 47524441 -234669223 + (A)n Simple_repeat Simple_repeat 1 20 0 367 261 168 31 chr1 47524445 47524606 -234669058 + MIR SINE MIR 47 229 -33 436 288 32 8 chr1 47524908 47525033 -234668631 - L2 LINE L2 0 3272 3145 695 256 6 11 chr1 47525887 47526067 -234667597 + MER97b DNA MER1_type? 1 179 -874 1611 61 0 0 chr1 47526313 47526509 -234667155 + L1PA7 LINE L1 5946 6141 -13 184 313 60 24 chr1 47526509 47526592 -234667072 - L3 LINE CR1 -171 1406 1321 24 53 0 0 chr1 47526856 47526894 -234666770 + AT_rich Low_complexity Low_complexity 1 38 0 951 309 23 35 chr1 47527469 47527644 -234666020 - L1MC4a LINE L1 -1879 5929 5753 1989 129 0 29 chr1 47527644 47527954 -234665710 + AluJb SINE Alu 1 301 -11 951 309 23 35 chr1 47527954 47528264 -234665400 - L1MC4a LINE L1 -2055 5753 5450 2142 96 0 45 chr1 47528278 47528591 -234665073 - AluSq SINE Alu -14 299 1 924 266 66 80 chr1 47528611 47529127 -234664537 + MLT1J LTR MaLR 1 509 -2 1940 91 0 0 chr1 47529497 47529749 -234663915 - AluY SINE Alu -4 307 56 279 252 78 39 chr1 47530226 47530329 -234663335 + L3 LINE CR1 1412 1518 -59 1136 185 129 67 chr1 47530442 47530815 -234662849 + MSTD LTR MaLR 1 396 0 1543 151 117 0 chr1 47530928 47531049 -234662615 + AluSx SINE Alu 1 106 -206 504 0 0 0 chr1 47531049 47531105 -234662559 + (TA)n Simple_repeat Simple_repeat 2 57 0 1543 151 117 0 chr1 47531105 47531248 -234662416 + AluSx SINE Alu 106 296 -16 226 355 52 19 chr1 47531890 47532045 -234661619 - MIR3 SINE MIR -45 163 4 610 281 42 26 chr1 47532401 47532593 -234661071 + MER63A DNA MER1_type 1 195 -15 392 373 76 27 chr1 47532660 47532990 -234660674 - L2 LINE L2 -22 3250 2905 2375 90 0 3 chr1 47533075 47533375 -234660289 + AluSq SINE Alu 1 299 -14 390 254 199 11 chr1 47534126 47534307 -234659357 - L2 LINE L2 -407 2907 2693 362 253 53 41 chr1 47534613 47534783 -234658881 + L1ME4a LINE L1 5733 5904 -217 313 172 0 47 chr1 47535102 47535166 -234658498 + MIR SINE MIR 87 147 -61 252 318 35 0 chr1 47535209 47535294 -234658370 + MIR SINE MIR 56 143 -119 249 198 79 158 chr1 47535858 47535961 -234657703 - L2 LINE L2 0 3313 3227 2198 92 4 4 chr1 47535961 47536262 -234657402 + AluSg SINE Alu 1 301 0 249 198 79 158 chr1 47536262 47536334 -234657330 - L2 LINE L2 -86 3227 3151 232 232 60 23 chr1 47536477 47536565 -234657099 - L1ME LINE L1 -547 5574 5484 2915 247 154 60 chr1 47536853 47537074 -234656590 - L2 LINE L2 -338 2976 2777 2016 145 7 0 chr1 47537074 47537371 -234656293 - AluSx SINE Alu -13 299 1 2915 247 154 60 chr1 47537371 47538704 -234654960 - L2 LINE L2 -537 2777 1276 401 262 188 9 chr1 47538945 47539129 -234654535 - MIR SINE MIR -48 214 1 730 194 44 58 chr1 47539938 47540144 -234653520 - MER3 DNA MER1_type -5 204 2 1581 200 32 0 chr1 47540862 47541147 -234652517 + AluJb SINE Alu 1 294 -18 239 221 38 43 chr1 47541472 47541598 -234652066 - L1MC3 LINE L1 -1025 6760 6613 810 269 5 40 chr1 47542018 47542241 -234651423 + MER58C DNA MER1_type 1 215 0 302 302 44 38 chr1 47542268 47542427 -234651237 + L1ME3A LINE L1 694 853 -5266 703 298 120 29 chr1 47542484 47542931 -234650733 + L1ME3A LINE L1 914 1452 -4858 2304 109 0 0 chr1 47542931 47543224 -234650440 - AluSx SINE Alu -19 293 1 703 298 120 29 chr1 47543224 47543494 -234650170 + L1ME3A LINE L1 1452 1696 -4614 * 2992 204 29 22 chr1 47543493 47544173 -234649491 + L1ME1 LINE L1 5477 6161 -5 232 242 110 0 chr1 47544197 47544288 -234649376 + L1 LINE L1 4390 4490 -1656 979 244 157 29 chr1 47544301 47544784 -234648880 + MLT1H1 LTR MaLR 3 547 -8 1034 250 60 75 chr1 47544790 47545103 -234648561 + L1ME3A LINE L1 4488 4804 -1356 441 66 0 0 chr1 47545103 47545164 -234648500 + (TG)n Simple_repeat Simple_repeat 2 62 0 1034 250 60 75 chr1 47545164 47545522 -234648142 + L1ME3A LINE L1 4804 5140 -1020 1982 143 3 0 chr1 47545522 47545808 -234647856 + AluJb SINE Alu 13 299 -13 1034 250 60 75 chr1 47545808 47546106 -234647558 + L1ME3A LINE L1 5140 5441 -719 322 67 0 0 chr1 47546153 47546198 -234647466 + MADE1 DNA Mariner 2 46 -34 734 240 45 42 chr1 47546198 47546506 -234647158 + L1ME3A LINE L1 5648 5956 -197 373 264 43 82 chr1 47546557 47546765 -234646899 + L1ME3A LINE L1 5945 6144 -9 910 263 139 16 chr1 47546786 47547166 -234646498 + HAL1 LINE L1 1491 1917 -590 238 238 88 68 chr1 47547392 47547539 -234646125 + HAL1b LINE L1 742 891 -457 338 319 50 71 chr1 47547582 47547905 -234645759 + L2 LINE L2 2827 3142 -130 1331 217 147 37 chr1 47547918 47548401 -234645263 - MLT1H LTR MaLR -13 536 1 337 338 8 23 chr1 47548406 47548539 -234645125 + L2 LINE L2 3162 3292 -21 308 345 36 16 chr1 47548541 47548793 -234644871 - L1MEd LINE L1 -5297 822 566 351 320 135 23 chr1 47549825 47550084 -234643580 + L2 LINE L2 2584 2871 -443 452 225 296 12 chr1 47550115 47550284 -234643380 + MIR SINE MIR 8 224 -38 2241 99 0 0 chr1 47550381 47550665 -234642999 - AluSx SINE Alu -28 284 1 251 369 134 7 chr1 47550728 47550877 -234642787 + L2 LINE L2 3102 3269 -3 2037 112 0 87 chr1 47551810 47552132 -234641532 + AluY SINE Alu 1 294 -17 321 208 104 0 chr1 47552899 47552995 -234640669 + MLT1K LTR MaLR 361 466 -122 2016 161 0 0 chr1 47553149 47553460 -234640204 + AluSx SINE Alu 1 311 -1 514 192 56 40 chr1 47553623 47553748 -234639916 + L2 LINE L2 3187 3313 0 327 330 0 0 chr1 47553754 47553857 -234639807 + MIR SINE MIR 160 262 0 22 35 0 0 chr1 47553944 47553973 -234639691 + AT_rich Low_complexity Low_complexity 1 29 0 990 222 38 9 chr1 47555074 47555286 -234638378 - MER58A DNA MER1_type -3 221 4 397 324 58 7 chr1 47555585 47555724 -234637940 + L2 LINE L2 2630 2775 -539 650 261 73 33 chr1 47555782 47556027 -234637637 + MLT1L LTR MaLR 119 373 -242 862 210 67 50 chr1 47557076 47557314 -234636350 - MIR SINE MIR -2 260 19 217 323 102 32 chr1 47557386 47557572 -234636092 + L2 LINE L2 2778 2976 -338 308 242 0 11 chr1 47557572 47557663 -234636001 + CT-rich Low_complexity Low_complexity 1 90 0 1273 199 65 10 chr1 47557825 47558132 -234635532 - MER33 DNA MER1_type 0 324 1 718 210 15 56 chr1 47558215 47558410 -234635254 + MER20 DNA MER1_type 1 187 -32 3040 193 74 46 chr1 47559423 47559628 -234634036 - L1ME1 LINE L1 -5 6161 5963 2767 99 3 3 chr1 47559628 47559992 -234633672 + THE1B LTR MaLR 1 364 0 3040 193 74 46 chr1 47559992 47560772 -234632892 - L1ME1 LINE L1 -203 5963 5149 692 176 34 47 chr1 47560939 47561087 -234632577 + MIR SINE MIR 107 252 -10 469 239 105 0 chr1 47561232 47561377 -234632287 - MIR SINE MIR -62 146 25 2331 98 0 3 chr1 47561588 47561893 -234631771 + AluY SINE Alu 4 307 -4 1987 135 3 3 chr1 47562352 47562648 -234631016 - AluSg1 SINE Alu -2 307 12 651 246 86 67 chr1 47562753 47562997 -234630667 - MIR SINE MIR -11 251 8 299 324 19 19 chr1 47563150 47563258 -234630406 - L2 LINE L2 -3 3310 3203 1600 158 7 11 chr1 47563582 47563867 -234629797 - AluSg1 SINE Alu -25 284 1 651 246 86 67 chr1 47563962 47564206 -234629458 - MIR SINE MIR -11 251 8 299 324 19 19 chr1 47564359 47564467 -234629197 - L2 LINE L2 -3 3310 3203 242 394 56 0 chr1 47564602 47564782 -234628882 - L2 LINE L2 -313 3000 2811 608 271 170 35 chr1 47564954 47565437 -234628227 - MLT1H LTR MaLR 0 549 2 353 272 59 15 chr1 47565510 47565646 -234628018 - MLT1J2 LTR MaLR -224 226 85 215 281 85 0 chr1 47567603 47567685 -234625979 + MIR SINE MIR 95 183 -79 288 293 9 9 chr1 47568215 47568544 -234625120 + (CA)n Simple_repeat Simple_repeat 1 329 0 223 203 34 0 chr1 47568563 47568622 -234625042 + (CA)n Simple_repeat Simple_repeat 1 61 0 303 28 0 0 chr1 47569231 47569267 -234624397 + (TG)n Simple_repeat Simple_repeat 2 37 0 1835 268 146 9 chr1 47569620 47570314 -234623350 + L2 LINE L2 1807 2595 -719 251 206 175 21 chr1 47570313 47570410 -234623254 + L2 LINE L2 3200 3311 -2 * 185 292 21 0 chr1 47570502 47570550 -234623114 - L2 LINE L2 -12 3260 3212 * 205 341 24 0 chr1 47570545 47570627 -234623037 - MIR SINE MIR -128 134 51 917 274 183 10 chr1 47570633 47571163 -234622501 - L2 LINE L2 0 3313 2650 2125 153 35 20 chr1 47571180 47571379 -234622285 + MLT2C2 LTR ERVL 1 196 -268 1999 93 0 0 chr1 47571379 47571650 -234622014 + AluSx SINE Alu 36 306 0 2125 153 35 20 chr1 47571650 47571853 -234621811 + MLT2C2 LTR ERVL 196 410 -54 244 258 298 7 chr1 47571892 47572043 -234621621 - L2 LINE L2 -37 3276 3082 225 136 23 0 chr1 47572056 47572100 -234621564 + MLT2C2 LTR ERVL 84 128 -336 307 111 19 0 chr1 47572130 47572184 -234621480 + (TG)n Simple_repeat Simple_repeat 2 56 0 1314 274 217 20 chr1 47572211 47572769 -234620895 - L2 LINE L2 -684 2630 1963 302 306 95 14 chr1 47573329 47573476 -234620188 - MIR SINE MIR -80 182 24 597 203 17 81 chr1 47573641 47573829 -234619835 - MIR SINE MIR -39 169 30 308 258 219 8 chr1 47573931 47574059 -234619605 + MIR SINE MIR 108 262 0 444 319 53 18 chr1 47574649 47574818 -234618846 - MIR SINE MIR -80 182 8 432 264 32 46 chr1 47575084 47575310 -234618354 + MIR SINE MIR 18 242 -20 361 271 47 13 chr1 47576009 47576137 -234617527 - L2 LINE L2 -220 3052 2921 255 222 184 22 chr1 47576471 47576595 -234617069 - MIR SINE MIR -72 136 4 192 289 48 12 chr1 47577234 47577317 -234616347 - L2 LINE L2 -249 3064 2979 421 263 222 30 chr1 47577323 47577521 -234616143 - MIR SINE MIR -5 257 22 1646 216 0 0 chr1 47578481 47578777 -234614887 + AluJo SINE Alu 2 297 -15 1953 135 57 0 chr1 47578782 47579078 -234614586 + AluSq SINE Alu 1 313 0 716 272 48 28 chr1 47579095 47579345 -234614319 - MIR SINE MIR -1 261 7 6040 143 45 45 chr1 47580114 47580646 -234613018 - L1MA8 LINE L1 -267 6024 5493 689 206 0 37 chr1 47580646 47580662 -234613002 - FLAM_A SINE Alu -171 131 116 414 0 0 0 chr1 47580662 47580708 -234612956 + (TG)n Simple_repeat Simple_repeat 2 47 0 189 0 0 0 chr1 47580707 47580728 -234612936 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 * 689 206 0 37 chr1 47580708 47580847 -234612817 - FLAM_A SINE Alu -186 116 1 6040 143 45 45 chr1 47580847 47581005 -234612659 - L1MA8 LINE L1 -798 5493 5336 2426 93 0 0 chr1 47581005 47581306 -234612358 + AluSx SINE Alu 3 303 -9 6040 143 45 45 chr1 47581306 47581640 -234612024 - L1MA8 LINE L1 -955 5336 5003 665 211 23 0 chr1 47581640 47581768 -234611896 - FLAM_A SINE Alu 0 133 3 6040 143 45 45 chr1 47581768 47582734 -234610930 - L1MA8 LINE L1 -1288 5003 4033 1537 183 63 3 chr1 47582725 47583107 -234610557 - L1MA8 LINE L1 -2869 3277 2873 * 846 270 14 5 chr1 47583112 47583327 -234610337 - MIR SINE MIR -45 217 1 412 237 184 16 chr1 47583327 47583500 -234610164 - MIR SINE MIR -60 202 7 542 242 99 21 chr1 47583883 47584070 -234609594 - MIR SINE MIR -12 250 51 416 281 130 10 chr1 47586292 47586484 -234607180 + MIR SINE MIR 35 249 -13 457 269 9 88 chr1 47587388 47587615 -234606049 + MIR SINE MIR 43 251 -11 289 248 14 23 chr1 47588200 47588422 -234605242 + (TG)n Simple_repeat Simple_repeat 1 219 0 240 385 0 11 chr1 47588498 47588672 -234604992 + (TATG)n Simple_repeat Simple_repeat 3 174 0 * 403 218 21 51 chr1 47588547 47589143 -234604521 + (TG)n Simple_repeat Simple_repeat 1 578 0 355 190 33 54 chr1 47589213 47589397 -234604267 + (TG)n Simple_repeat Simple_repeat 1 180 0 326 289 23 26 chr1 47589420 47589752 -234603912 + (TG)n Simple_repeat Simple_repeat 1 331 0 280 278 26 46 chr1 47589794 47589945 -234603719 + G-rich Low_complexity Low_complexity 5 152 0 204 359 28 0 chr1 47590210 47590352 -234603312 + (TTGGGG)n Simple_repeat Simple_repeat 2 147 0 250 290 169 24 chr1 47591162 47591222 -234602442 + MIR SINE MIR 14 64 -198 2113 96 0 7 chr1 47591222 47591494 -234602170 + AluSg SINE Alu 1 270 -40 250 290 169 24 chr1 47591494 47591557 -234602107 + MIR SINE MIR 64 155 -107 379 267 72 92 chr1 47591565 47591816 -234601848 + L2 LINE L2 3021 3266 -6 215 271 34 0 chr1 47591859 47591918 -234601746 - MIR SINE MIR -6 256 196 292 170 70 81 chr1 47592343 47592450 -234601214 - MIR SINE MIR -19 189 84 342 224 0 53 chr1 47592450 47592526 -234601138 + MER91A DNA MER1_type 1 72 -124 338 213 147 44 chr1 47592776 47592912 -234600752 - MIR SINE MIR -90 172 23 226 258 45 68 chr1 47593542 47593674 -234599990 - L2 LINE L2 -522 2792 2664 371 236 114 21 chr1 47593849 47593989 -234599675 - MIR SINE MIR -19 243 91 252 0 0 0 chr1 47594546 47594574 -234599090 + (CA)n Simple_repeat Simple_repeat 1 28 0 324 183 98 41 chr1 47594825 47594969 -234598695 + MIR SINE MIR 16 171 -90 522 266 61 109 chr1 47595698 47595927 -234597737 + MIR SINE MIR 1 218 -44 328 331 33 0 chr1 47596554 47596675 -234596989 + MIR SINE MIR 107 231 -31 515 248 22 15 chr1 47596692 47596829 -234596835 + MIR3 SINE MIR 61 198 -10 260 114 0 0 chr1 47596871 47596906 -234596758 - U2 snRNA snRNA -153 35 1 405 214 111 40 chr1 47597281 47597407 -234596257 + MIR SINE MIR 6 140 -122 200 325 130 0 chr1 47597931 47598008 -234595656 + L2 LINE L2 3169 3255 -17 359 343 50 14 chr1 47598127 47598267 -234595397 + MIR SINE MIR 20 164 -98 577 283 18 18 chr1 47598301 47598467 -234595197 - MIR SINE MIR -24 238 73 269 115 0 19 chr1 47599845 47599897 -234593767 + (CA)n Simple_repeat Simple_repeat 2 52 0 2082 125 3 3 chr1 47600591 47600888 -234592776 + AluSx SINE Alu 1 297 -15 455 292 129 10 chr1 47601971 47602175 -234591489 - MIR SINE MIR -6 256 30 808 186 93 10 chr1 47602827 47603020 -234590644 - MIR SINE MIR -25 237 29 375 255 193 14 chr1 47603234 47603379 -234590285 + MIR3 SINE MIR 19 189 -19 372 298 56 19 chr1 47603646 47603807 -234589857 - L3 LINE CR1 -2 1575 1409 264 30 0 0 chr1 47603954 47603987 -234589677 + (CA)n Simple_repeat Simple_repeat 1 33 0 527 214 43 24 chr1 47604415 47604588 -234589076 - MIR SINE MIR -56 206 36 2280 104 0 0 chr1 47604598 47604886 -234588778 - AluSx SINE Alu -24 288 1 1230 198 57 20 chr1 47604887 47605241 -234588423 - L1 LINE L1 -2643 4205 3839 807 224 14 31 chr1 47605243 47605466 -234588198 - AluJo SINE Alu -8 304 86 9869 190 142 36 chr1 47605467 47608871 -234584793 - L1 LINE L1 -3015 3833 32 2777 213 43 15 chr1 47608874 47609549 -234584115 - L1M4 LINE L1 -946 5200 4507 1717 181 34 17 chr1 47609915 47610269 -234583395 + Looper DNA T2_type 1009 1368 -190 3235 218 104 81 chr1 47610273 47610939 -234582725 + L1MB3 LINE L1 3853 4502 -1644 1555 167 76 4 chr1 47610939 47611215 -234582449 + AluJb SINE Alu 1 296 -16 3235 218 104 81 chr1 47611215 47611454 -234582210 + L1MB3 LINE L1 4502 4734 -1412 1739 146 24 10 chr1 47611454 47611748 -234581916 + AluSx SINE Alu 6 303 -9 3235 218 104 81 chr1 47611748 47611817 -234581847 + L1MB3 LINE L1 4734 4800 -1346 324 102 0 0 chr1 47611817 47611866 -234581798 + (TG)n Simple_repeat Simple_repeat 2 50 0 3235 218 104 81 chr1 47611866 47612286 -234581378 + L1MB3 LINE L1 4800 5209 -937 735 116 0 0 chr1 47612286 47612398 -234581266 + (TA)n Simple_repeat Simple_repeat 2 113 0 2224 91 0 0 chr1 47612398 47612684 -234580980 - AluY SINE Alu -25 286 1 3235 218 104 81 chr1 47612684 47612733 -234580931 + L1MB3 LINE L1 5208 5334 -812 865 259 40 7 chr1 47612725 47613022 -234580642 + L1ME1 LINE L1 5262 5555 -611 * 539 268 120 29 chr1 47613025 47613275 -234580389 + L1ME1 LINE L1 5903 6332 -2 1252 213 7 28 chr1 47613287 47613573 -234580091 + AluJo SINE Alu 5 284 -28 900 135 8 8 chr1 47613789 47613922 -234579742 + AluJb SINE Alu 1 133 -179 1954 120 43 0 chr1 47613926 47614225 -234579439 + AluSx SINE Alu 1 312 0 11523 78 4 6 chr1 47614226 47615738 -234577926 + L1P LINE L1 3 1511 -4635 * 12669 29 10 0 chr1 47615716 47617949 -234575715 + L1PA4 LINE L1 3883 6134 -21 255 170 21 0 chr1 47618899 47618946 -234574718 - L2 LINE L2 -3 3310 3263 437 326 83 71 chr1 47619384 47619807 -234573857 + L2 LINE L2 2836 3263 -9 2011 196 25 10 chr1 47620678 47620756 -234572908 + L1MB3 LINE L1 5422 5497 -686 2122 151 34 8 chr1 47620756 47621108 -234572556 - MER46B DNA MER2_type 0 236 1 2011 196 25 10 chr1 47621108 47621433 -234572231 + L1MB3 LINE L1 5497 5831 -352 2287 84 0 34 chr1 47621433 47621754 -234571910 + AluY SINE Alu 1 310 -1 1528 169 47 0 chr1 47621772 47622051 -234571613 + L1MB3 LINE L1 5881 6172 -11 368 233 64 39 chr1 47622077 47622202 -234571462 - AluJb SINE Alu -52 250 138 12794 31 3 3 chr1 47622202 47624404 -234569260 - L1PA4 LINE L1 0 6155 3947 7644 33 1 19 chr1 47624408 47625153 -234568511 + L1P LINE L1 3017 3743 -2403 2607 37 3 0 chr1 47625153 47625453 -234568211 + AluY SINE Alu 1 301 -10 7644 33 1 19 chr1 47625453 47625671 -234567993 + L1P LINE L1 3743 3963 -2183 715 273 93 59 chr1 47625664 47626308 -234567356 - L1MEc LINE L1 -4640 1756 1091 * 1754 93 85 8 chr1 47626340 47626587 -234567077 - AluSp SINE Alu -8 305 40 283 377 45 67 chr1 47627276 47627499 -234566165 + L2 LINE L2 3042 3259 -13 3613 109 22 4 chr1 47627921 47628427 -234565237 + L1PA8 LINE L1 5658 6172 0 3399 191 66 44 chr1 47628569 47628606 -234565058 - L1MB7 LINE L1 -16 6168 6133 2467 58 0 0 chr1 47628606 47628900 -234564764 - AluY SINE Alu -17 294 1 3399 191 66 44 chr1 47628900 47629852 -234563812 - L1MB7 LINE L1 -51 6133 5154 * 5643 142 35 35 chr1 47629843 47631215 -234562449 - L1MA4A LINE L1 -5 6298 4910 10023 199 106 54 chr1 47631215 47631969 -234561695 - L1 LINE L1 -1883 4965 4251 2214 81 46 0 chr1 47631969 47632252 -234561412 - AluSg SINE Alu -14 296 1 10023 199 106 54 chr1 47632252 47632609 -234561055 - L1 LINE L1 -2597 4251 3914 807 224 14 31 chr1 47632609 47632832 -234560832 - AluJo SINE Alu -8 304 86 10023 199 106 54 chr1 47632832 47636241 -234557423 - L1 LINE L1 -2934 3914 32 2789 213 43 15 chr1 47636244 47636919 -234556745 - L1M4 LINE L1 -946 5200 4507 1717 181 34 17 chr1 47637285 47637639 -234556025 + Looper DNA T2_type 1009 1368 -190 3254 221 109 71 chr1 47637643 47638309 -234555355 + L1ME1 LINE L1 3853 4492 -1654 1555 167 76 4 chr1 47638309 47638585 -234555079 + AluJb SINE Alu 1 296 -16 3254 221 109 71 chr1 47638585 47638820 -234554844 + L1ME1 LINE L1 4492 4717 -1429 1923 139 13 10 chr1 47638820 47639122 -234554542 + AluSx SINE Alu 1 303 -9 3254 221 109 71 chr1 47639122 47639191 -234554473 + L1ME1 LINE L1 4717 4782 -1364 288 111 0 0 chr1 47639191 47639236 -234554428 + (TG)n Simple_repeat Simple_repeat 2 46 0 3254 221 109 71 chr1 47639236 47639645 -234554019 + L1ME1 LINE L1 4782 5287 -859 331 311 0 0 chr1 47639656 47639746 -234553918 + L1MC4 LINE L1 6614 6703 -1339 317 322 0 0 chr1 47639670 47639760 -234553904 - L1MC4 LINE L1 -1339 6703 6614 * 2198 98 0 0 chr1 47639761 47640048 -234553616 - AluY SINE Alu -24 287 1 763 255 41 0 chr1 47640143 47640386 -234553278 + L1ME1 LINE L1 5303 5555 -611 438 262 121 30 chr1 47640389 47640639 -234553025 + L1ME1 LINE L1 5903 6332 -2 1322 210 7 28 chr1 47640651 47640937 -234552727 + AluJo SINE Alu 5 284 -28 912 135 8 8 chr1 47641153 47641286 -234552378 + AluJb SINE Alu 1 133 -179 2072 120 36 0 chr1 47641290 47641591 -234552073 + AluSx SINE Alu 1 312 0 10816 77 4 6 chr1 47641592 47643100 -234550564 + L1P LINE L1 3 1507 -4639 12498 27 1 6 chr1 47643100 47645352 -234548312 + L1PA4 LINE L1 3906 6154 -1 738 262 94 84 chr1 47645358 47646113 -234547551 + L1ME2 LINE L1 1731 2496 -3900 2291 99 0 3 chr1 47646113 47646405 -234547259 + AluSg SINE Alu 2 292 -18 738 262 94 84 chr1 47646405 47646434 -234547230 + L1ME2 LINE L1 2496 2523 -3873 2479 202 86 17 chr1 47646457 47647353 -234546311 + L1ME2 LINE L1 5037 6004 -229 1982 129 3 69 chr1 47647796 47648129 -234545535 + AluSx SINE Alu 1 311 -1 1135 243 92 6 chr1 47649392 47649738 -234543926 + L1ME1 LINE L1 5770 6145 -21 265 304 130 43 chr1 47650285 47650607 -234543057 - L3b LINE CR1 -132 1451 1102 1206 167 138 30 chr1 47650788 47651057 -234542607 + AluJo SINE Alu 6 303 -9 545 270 81 11 chr1 47652428 47652602 -234541062 + MLT1K LTR MaLR 291 476 -112 233 310 148 39 chr1 47652641 47652796 -234540868 + MIR3 SINE MIR 28 199 -9 2107 126 0 0 chr1 47652931 47653245 -234540419 + AluSx SINE Alu 1 314 0 27 49 0 0 chr1 47653654 47653695 -234539969 + AT_rich Low_complexity Low_complexity 1 41 0 359 272 81 29 chr1 47654123 47654259 -234539405 - L2 LINE L2 0 3313 3171 234 0 0 0 chr1 47654295 47654321 -234539343 + (T)n Simple_repeat Simple_repeat 1 26 0 537 302 109 82 chr1 47655545 47656566 -234537098 + L1M2 LINE L1 445 1478 -5371 215 275 66 44 chr1 47657014 47657105 -234536559 - MIR3 SINE MIR -15 193 101 1127 245 78 37 chr1 47657788 47658318 -234535346 - L2 LINE L2 -43 3270 2709 312 369 39 93 chr1 47658316 47658476 -234535188 + L2 LINE L2 2978 3114 -158 * 2171 66 0 11 chr1 47658476 47658749 -234534915 - AluY SINE Alu -7 304 35 312 369 39 93 chr1 47658749 47658900 -234534764 + L2 LINE L2 3114 3272 0 343 367 7 27 chr1 47659154 47659301 -234534363 + MIR3 SINE MIR 35 178 -30 2246 106 0 0 chr1 47660070 47660371 -234533293 - AluSx SINE Alu -11 301 1 390 256 123 10 chr1 47662798 47662919 -234530745 - MIR SINE MIR -60 148 31 274 342 67 17 chr1 47663740 47663860 -234529804 - MIR3 SINE MIR -43 165 40 392 310 9 17 chr1 47664119 47664235 -234529429 + MIR SINE MIR 31 145 -117 2265 101 75 19 chr1 47665387 47665763 -234527901 - LTR10E LTR ERV1 -236 397 1 466 204 120 19 chr1 47666504 47666612 -234527052 - MIR3 SINE MIR -48 160 42 221 263 0 35 chr1 47666913 47666970 -234526694 + L2 LINE L2 3190 3244 -69 1250 182 84 95 chr1 47666996 47667365 -234526299 + MLT1A1 LTR MaLR 1 365 0 409 310 21 0 chr1 47667798 47667940 -234525724 - MER117 DNA MER1_type -52 145 1 334 311 97 0 chr1 47668475 47668627 -234525037 - MIR3 SINE MIR -32 176 12 1087 271 59 65 chr1 47669022 47669528 -234524136 + REP3 LTR ERV 3 505 -57 2117 130 0 3 chr1 47669635 47669934 -234523730 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 47670207 47670229 -234523435 + AT_rich Low_complexity Low_complexity 1 22 0 362 284 39 54 chr1 47670242 47670446 -234523218 - HAL1b LINE L1 -733 615 415 744 185 7 22 chr1 47670446 47670581 -234523083 + FLAM_C SINE Alu 1 133 0 876 153 102 31 chr1 47670696 47670892 -234522772 + MER2 DNA MER2_type 1 210 -135 201 74 0 0 chr1 47670898 47670925 -234522739 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1178 148 184 0 chr1 47670930 47671153 -234522511 - AluJo SINE Alu -38 274 11 365 194 0 15 chr1 47671214 47671281 -234522383 + MER2 DNA MER2_type 280 345 0 23 33 0 0 chr1 47672847 47672877 -234520787 + AT_rich Low_complexity Low_complexity 1 30 0 682 47 0 0 chr1 47673169 47673254 -234520410 + AluSc SINE Alu 218 302 -7 386 231 22 11 chr1 47673285 47673376 -234520288 - Charlie1 DNA MER1_type -2669 92 1 326 188 126 1 chr1 47673454 47673544 -234520120 - L1ME3 LINE L1 -174 5996 5896 347 249 72 114 chr1 47673660 47673700 -234519964 - L1M4 LINE L1 -1419 4727 4687 2212 101 0 19 chr1 47673700 47674008 -234519656 - AluSg SINE Alu -8 302 1 347 249 72 114 chr1 47674008 47674204 -234519460 - L1M4 LINE L1 -1459 4687 4501 744 297 113 3 chr1 47674319 47674646 -234519018 - L1M4 LINE L1 -1812 4334 3972 278 227 67 0 chr1 47674658 47674733 -234518931 + Charlie1 DNA MER1_type 1612 1691 -1070 921 300 64 9 chr1 47674759 47675306 -234518358 - L1M4 LINE L1 -2301 3845 3269 703 201 100 20 chr1 47675331 47675630 -234518034 - L1MEc LINE L1 -5230 1166 844 473 231 20 14 chr1 47675721 47675868 -234517796 + L1MEc LINE L1 1761 1908 -4488 859 163 0 7 chr1 47675925 47676060 -234517604 - AluSq/x SINE Alu -178 134 1 375 231 0 50 chr1 47676213 47676373 -234517291 - L1MEd LINE L1 -5019 1100 949 2312 107 0 0 chr1 47676938 47677237 -234516427 + AluSx SINE Alu 1 299 -13 180 330 0 75 chr1 47677815 47677909 -234515755 - MER5A DNA MER1_type -32 157 71 256 316 0 0 chr1 47678193 47678272 -234515392 + GA-rich Low_complexity Low_complexity 2 80 0 827 282 61 48 chr1 47679348 47679806 -234513858 + MLT1J LTR MaLR 1 464 -47 1603 170 58 25 chr1 47679827 47680046 -234513618 - L1MA4 LINE L1 -2 6298 6088 180 0 0 0 chr1 47680046 47680066 -234513598 + (TTC)n Simple_repeat Simple_repeat 2 21 0 2018 126 14 3 chr1 47680067 47680352 -234513312 - AluSx SINE Alu -24 288 1 1603 170 58 25 chr1 47680352 47680525 -234513139 - L1MA4 LINE L1 -211 6089 5891 412 314 51 13 chr1 47681278 47681434 -234512230 + MIR SINE MIR 80 241 -21 3161 157 14 29 chr1 47681507 47681941 -234511723 + L1 LINE L1 3735 4157 -1989 2008 160 34 11 chr1 47681941 47682297 -234511367 - MER47A DNA MER2_type -1 365 2 3161 157 14 29 chr1 47682297 47682519 -234511145 + L1 LINE L1 4157 4381 -1765 2930 278 35 78 chr1 47682534 47684233 -234509431 + L1PBa LINE L1 3 1629 -5234 * 4821 170 32 34 chr1 47684208 47685195 -234508469 + L1PBb LINE L1 1 985 -5219 2016 119 18 0 chr1 47685198 47685475 -234508189 + AluSx SINE Alu 3 284 -28 3785 202 99 30 chr1 47685484 47686807 -234506857 + L1PBb LINE L1 1131 2543 -3660 1880 164 166 7 chr1 47686828 47687279 -234506385 + L1MA7 LINE L1 5769 6291 0 1820 231 105 72 chr1 47687973 47689099 -234504565 + L1ME LINE L1 282 1370 -4752 703 160 48 8 chr1 47689099 47689224 -234504440 + FLAM_C SINE Alu 1 130 -3 1820 231 105 72 chr1 47689224 47689461 -234504203 + L1ME LINE L1 1370 1598 -4524 2726 3 0 0 chr1 47689461 47689755 -234503909 + AluY SINE Alu 2 295 -16 1820 231 105 72 chr1 47689755 47690269 -234503395 + L1ME LINE L1 1598 2232 -3890 1001 236 70 21 chr1 47690285 47690472 -234503192 + L1M4 LINE L1 4180 4357 -1789 2264 89 0 0 chr1 47690472 47690763 -234502901 + AluSc SINE Alu 1 291 -18 1001 236 70 21 chr1 47690763 47690948 -234502716 + L1M4 LINE L1 4357 4570 -1576 283 239 101 7 chr1 47690978 47691116 -234502548 + L1MA10 LINE L1 6184 6334 0 1184 246 36 36 chr1 47691815 47692149 -234501515 + L2 LINE L2 2614 2947 -367 1297 201 72 4 chr1 47692288 47692552 -234501112 + Tigger7 DNA MER2_type 1 282 -451 1064 72 48 6 chr1 47692553 47692720 -234500944 + Tigger7 DNA MER2_type 2414 2587 0 1112 196 113 11 chr1 47692887 47693152 -234500512 + AluJb SINE Alu 2 293 -9 903 268 155 14 chr1 47693731 47694093 -234499571 + LTR16C LTR ERVL 79 491 0 953 169 143 29 chr1 47694186 47694493 -234499171 - Charlie1b DNA MER1_type -138 385 44 1100 167 8 33 chr1 47694681 47694934 -234498730 - AluJo SINE Alu -15 297 9 822 141 7 22 chr1 47695052 47695187 -234498477 + FLAM_C SINE Alu 1 133 0 328 26 0 0 chr1 47695190 47695228 -234498436 + (AGGGGG)n Simple_repeat Simple_repeat 5 42 0 600 53 0 0 chr1 47695228 47695304 -234498360 + (GAA)n Simple_repeat Simple_repeat 3 78 0 234 323 54 31 chr1 47695415 47695545 -234498119 + L2 LINE L2 2967 3099 -173 244 256 100 0 chr1 47695564 47695654 -234498010 + MER94 DNA DNA 5 103 -31 259 264 198 11 chr1 47695674 47695765 -234497899 + L2 LINE L2 3136 3243 -29 449 273 9 27 chr1 47695938 47696048 -234497616 + L2 LINE L2 3182 3289 -24 259 293 0 71 chr1 47696243 47696342 -234497322 + L2 LINE L2 3180 3271 -1 484 298 229 5 chr1 47697048 47697236 -234496428 + MIR SINE MIR 3 232 -30 304 275 12 12 chr1 47697279 47697359 -234496305 - MIR SINE MIR -124 138 59 1548 126 5 5 chr1 47697648 47697871 -234495793 + AluSg/x SINE Alu 85 307 -5 1741 145 40 20 chr1 47697998 47698295 -234495369 + AluJb SINE Alu 1 303 -9 2144 110 14 0 chr1 47699523 47699814 -234493850 + AluSx SINE Alu 1 295 -17 382 341 72 0 chr1 47700160 47700298 -234493366 - L2 LINE L2 -4 3268 3121 256 170 21 0 chr1 47701695 47701742 -234491922 - L2 LINE L2 -3 3310 3263 467 326 83 71 chr1 47702178 47702601 -234491063 + L2 LINE L2 2836 3263 -9 1815 196 27 10 chr1 47703472 47703550 -234490114 + L1MB3 LINE L1 5422 5497 -686 1959 148 34 8 chr1 47703550 47703902 -234489762 - MER46B DNA MER2_type 0 236 1 1815 196 27 10 chr1 47703902 47704226 -234489438 + L1MB3 LINE L1 5497 5831 -352 2269 84 0 37 chr1 47704226 47704548 -234489116 + AluY SINE Alu 1 310 -1 1400 169 47 0 chr1 47704566 47704845 -234488819 + L1MB3 LINE L1 5881 6172 -11 332 257 79 1 chr1 47704871 47704989 -234488675 - AluJb SINE Alu -52 250 140 12327 33 3 0 chr1 47704996 47707235 -234486429 - L1PA4 LINE L1 0 6155 3906 10816 77 4 6 chr1 47707235 47708743 -234484921 - L1P LINE L1 -4639 1507 3 2098 113 36 0 chr1 47708744 47709045 -234484619 - AluSx SINE Alu 0 312 1 912 135 8 8 chr1 47709049 47709182 -234484482 - AluJb SINE Alu -179 133 1 1295 213 7 28 chr1 47709398 47709684 -234483980 - AluJo SINE Alu -28 284 5 230 278 9 26 chr1 47709696 47709716 -234483948 - L1MA10 LINE L1 -2 6332 6313 448 261 130 30 chr1 47709716 47709946 -234483718 - L1ME1 LINE L1 -11 6155 5903 763 255 41 0 chr1 47709949 47710192 -234483472 - L1ME1 LINE L1 -611 5555 5303 2663 221 104 78 chr1 47710238 47710287 -234483377 - L1ME1 LINE L1 -812 5334 5288 2210 91 0 0 chr1 47710287 47710573 -234483091 + AluY SINE Alu 1 286 -25 735 116 0 0 chr1 47710573 47710685 -234482979 + (TA)n Simple_repeat Simple_repeat 2 113 0 2663 221 104 78 chr1 47710685 47711105 -234482559 - L1ME1 LINE L1 -858 5288 4881 324 102 0 0 chr1 47711105 47711154 -234482510 + (CA)n Simple_repeat Simple_repeat 2 50 0 2663 221 104 78 chr1 47711154 47711223 -234482441 - L1ME1 LINE L1 -1265 4881 4815 1940 139 13 10 chr1 47711223 47711525 -234482139 - AluSx SINE Alu -9 303 1 2663 221 104 78 chr1 47711525 47711760 -234481904 - L1ME1 LINE L1 -1331 4815 4588 1570 167 76 4 chr1 47711760 47712036 -234481628 - AluJb SINE Alu -16 296 1 2663 221 104 78 chr1 47712036 47712702 -234480962 - L1ME1 LINE L1 -1558 4588 3853 1548 181 34 17 chr1 47712706 47713060 -234480604 - Looper DNA T2_type -190 1368 1009 2492 207 44 15 chr1 47713438 47714101 -234479563 + L1M4 LINE L1 4519 5200 -946 9047 190 147 34 chr1 47714104 47717512 -234476152 + L1MA4A LINE L1 32 3833 -3015 836 224 14 31 chr1 47717513 47717736 -234475928 + AluJo SINE Alu 86 304 -8 4518 187 33 16 chr1 47717738 47718093 -234475571 + L1MA4A LINE L1 3839 4186 -2662 2250 77 45 0 chr1 47718093 47718379 -234475285 + AluSg SINE Alu 1 299 -11 4518 187 33 16 chr1 47718379 47719130 -234474534 + L1MA4A LINE L1 4186 4964 -1884 5134 141 35 35 chr1 47719131 47720503 -234473161 + L1MA4A LINE L1 5612 7000 -5 3009 192 66 44 chr1 47720494 47721446 -234472218 + L1MB7 LINE L1 5154 6133 -51 * 2501 57 0 0 chr1 47721446 47721746 -234471918 + AluY SINE Alu 1 300 -11 3009 192 66 44 chr1 47721746 47721783 -234471881 + L1MB7 LINE L1 6133 6168 -16 3360 109 22 4 chr1 47721927 47722433 -234471231 - L1PA8 LINE L1 0 6172 5658 297 359 54 76 chr1 47722855 47723078 -234470586 - L2 LINE L2 -13 3259 3042 1760 93 85 8 chr1 47723767 47724014 -234469650 + AluSp SINE Alu 40 305 -8 563 244 111 81 chr1 47724014 47724687 -234468977 + L1ME2 LINE L1 1333 2183 -4549 * 7373 32 1 18 chr1 47724682 47724900 -234468764 - L1P LINE L1 -2183 3963 3743 2669 35 3 0 chr1 47724900 47725210 -234468454 - AluY SINE Alu 0 311 1 7373 32 1 18 chr1 47725210 47725982 -234467682 - L1P LINE L1 -2403 3743 2990 12066 26 1 4 chr1 47725983 47728174 -234465490 + L1PA3 LINE L1 3967 6155 0 737 262 94 84 chr1 47728180 47728935 -234464729 + L1ME2 LINE L1 2160 2925 -3900 2291 99 0 3 chr1 47728935 47729227 -234464437 + AluSg SINE Alu 2 292 -18 737 262 94 84 chr1 47729227 47729256 -234464408 + L1ME2 LINE L1 2925 2952 -3873 2406 199 85 26 chr1 47729279 47730183 -234463481 + L1ME2 LINE L1 5466 6433 -229 1964 130 3 70 chr1 47730627 47730958 -234462706 + AluSx SINE Alu 1 309 -3 1135 243 92 6 chr1 47732221 47732567 -234461097 + L1ME1 LINE L1 5770 6145 -21 272 304 130 43 chr1 47733114 47733436 -234460228 - L3b LINE CR1 -132 1451 1102 1206 167 138 30 chr1 47733617 47733886 -234459778 + AluJo SINE Alu 6 303 -9 545 270 81 11 chr1 47735257 47735431 -234458233 + MLT1K LTR MaLR 291 476 -112 223 333 178 0 chr1 47735496 47735625 -234458039 + MIR3 SINE MIR 48 199 -9 2107 126 0 0 chr1 47735760 47736074 -234457590 + AluSx SINE Alu 1 314 0 27 49 0 0 chr1 47736483 47736524 -234457140 + AT_rich Low_complexity Low_complexity 1 41 0 359 272 81 29 chr1 47736952 47737088 -234456576 - L2 LINE L2 0 3313 3171 252 0 0 0 chr1 47737124 47737152 -234456512 + (T)n Simple_repeat Simple_repeat 1 28 0 396 274 126 46 chr1 47738580 47738905 -234454759 + L1ME4a LINE L1 5769 6119 -2 2467 259 88 56 chr1 47739481 47741949 -234451715 + L1MCc LINE L1 23 2771 -4351 1734 169 34 39 chr1 47741959 47742315 -234451349 + MLT1A1 LTR MaLR 10 363 -2 365 196 23 30 chr1 47742315 47742448 -234451216 + L1MCc LINE L1 2770 2901 -4221 1109 339 113 10 chr1 47742587 47743297 -234450367 + L2 LINE L2 2080 2862 -452 264 182 0 73 chr1 47743536 47743591 -234450073 + L2 LINE L2 3180 3230 -83 295 337 83 18 chr1 47743903 47744072 -234449592 + MER5A DNA MER1_type 1 180 -9 473 294 102 33 chr1 47744410 47744774 -234448890 - L1MC4a LINE L1 -1543 6265 5877 1702 138 52 31 chr1 47744836 47745125 -234448539 - AluJo SINE Alu -5 307 13 21 0 0 0 chr1 47745617 47745638 -234448026 + AT_rich Low_complexity Low_complexity 1 21 0 205 237 158 26 chr1 47745704 47745780 -234447884 + L3b LINE CR1 1483 1568 -15 191 323 110 39 chr1 47746419 47746546 -234447118 + L2 LINE L2 3118 3253 -19 2183 128 0 3 chr1 47746585 47746889 -234446775 + AluSx SINE Alu 1 303 -9 315 320 113 36 chr1 47746919 47747166 -234446498 + Charlie8 DNA MER1_type 1 266 -2151 22 35 0 0 chr1 47747591 47747620 -234446044 + AT_rich Low_complexity Low_complexity 1 29 0 757 263 47 51 chr1 47747643 47747898 -234445766 + MIR SINE MIR 9 262 0 195 283 25 100 chr1 47748252 47748372 -234445292 - L2 LINE L2 -5 3267 3157 1148 164 136 50 chr1 47748615 47748895 -234444769 + AluJo SINE Alu 9 312 0 1520 213 113 68 chr1 47748947 47749267 -234444397 + L1MC4a LINE L1 6735 7039 -769 2215 110 3 0 chr1 47749267 47749557 -234444107 + AluSq SINE Alu 1 291 -22 1520 213 113 68 chr1 47749557 47749662 -234444002 + L1MC4a LINE L1 7039 7138 -670 760 195 126 21 chr1 47749662 47749852 -234443812 + MER6B DNA MER2_type 1 210 0 1520 213 113 68 chr1 47749852 47750088 -234443576 + L1MC4a LINE L1 7138 7427 -381 580 202 0 0 chr1 47750103 47750202 -234443462 - AluJ/FLAM SINE Alu -211 101 3 676 178 20 0 chr1 47750204 47750350 -234443314 + L1MD3 LINE L1 7846 7994 -1 953 174 0 0 chr1 47750355 47750510 -234443154 + AluJo SINE Alu 1 155 -157 234 128 0 43 chr1 47750523 47750570 -234443094 + Alu SINE Alu 89 133 0 2456 65 0 16 chr1 47750574 47750709 -234442955 + AluY SINE Alu 1 137 -174 2883 3 0 0 chr1 47750709 47751020 -234442644 + AluYa5 SINE Alu 1 311 0 2456 65 0 16 chr1 47751020 47751193 -234442471 + AluY SINE Alu 137 304 -7 471 314 48 27 chr1 47753158 47753346 -234440318 + MIR SINE MIR 13 204 -58 252 0 0 0 chr1 47753632 47753660 -234440004 + (A)n Simple_repeat Simple_repeat 1 28 0 388 264 126 31 chr1 47753749 47753908 -234439756 - MIR3 SINE MIR -6 202 29 295 219 295 29 chr1 47753926 47754031 -234439633 + MIR SINE MIR 127 259 -3 191 338 37 7 chr1 47754412 47754548 -234439116 - L2 LINE L2 -81 3232 3093 2403 103 0 0 chr1 47754970 47755280 -234438384 + AluSx SINE Alu 1 310 -2 231 279 139 12 chr1 47755867 47755953 -234437711 + L2 LINE L2 2950 3046 -226 284 214 43 0 chr1 47757008 47757078 -234436586 + MLT1J LTR MaLR 1 73 -438 425 211 34 132 chr1 47757096 47757300 -234436364 + MLT1J LTR MaLR 237 420 -91 1507 192 58 32 chr1 47757947 47758296 -234435368 + Charlie4a DNA MER1_type 49 413 -1548 1309 83 6 0 chr1 47758296 47758476 -234435188 - L1PA11 LINE L1 -1 6173 5993 1507 192 58 32 chr1 47758476 47758559 -234435105 + Charlie4a DNA MER1_type 413 492 -16 1208 210 21 0 chr1 47759542 47759775 -234433889 + MIR SINE MIR 6 243 -19 2337 81 3 3 chr1 47759830 47760127 -234433537 - AluSx SINE Alu -15 297 1 334 343 79 32 chr1 47760161 47760251 -234433413 - L3b LINE CR1 -118 1465 1381 2233 101 0 7 chr1 47760251 47760547 -234433117 + AluSg SINE Alu 1 294 -16 334 343 79 32 chr1 47760547 47760797 -234432867 - L3b LINE CR1 -202 1381 1109 1940 151 0 16 chr1 47760872 47761177 -234432487 + AluJb SINE Alu 1 300 -12 1582 146 83 117 chr1 47761808 47762303 -234431361 + Charlie1b DNA MER1_type 1 478 -45 224 258 21 10 chr1 47762353 47762450 -234431214 + (TA)n Simple_repeat Simple_repeat 1 98 0 425 267 236 51 chr1 47762455 47762650 -234431014 + MIR SINE MIR 20 250 -12 1665 217 85 8 chr1 47764112 47764219 -234429445 + L1MC4 LINE L1 4713 4810 -1336 654 49 0 0 chr1 47764219 47764301 -234429363 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 1665 217 85 8 chr1 47764301 47764700 -234428964 + L1MC4 LINE L1 4810 5258 -888 1245 187 91 0 chr1 47764726 47764967 -234428697 + AluJo SINE Alu 14 276 -36 372 226 47 0 chr1 47765002 47765108 -234428556 + L1MC4 LINE L1 5254 5364 -980 1208 205 112 17 chr1 47765293 47765962 -234427702 + L1MC4 LINE L1 5349 6114 -52 338 211 211 16 chr1 47765872 47766000 -234427664 + L1MA10 LINE L1 6181 6333 -1 * 1916 160 3 3 chr1 47766012 47766312 -234427352 + AluJb SINE Alu 1 300 -12 742 172 99 7 chr1 47766486 47766712 -234426952 + L1ME LINE L1 5254 5495 -675 2263 99 0 10 chr1 47767670 47767972 -234425692 + AluSq SINE Alu 1 299 -14 10738 211 53 57 chr1 47768269 47768713 -234424951 - L1PB4 LINE L1 -14 6845 6401 2065 134 7 0 chr1 47768713 47769020 -234424644 - AluSx SINE Alu -3 309 1 10738 211 53 57 chr1 47769020 47771145 -234422519 - L1PB4 LINE L1 -458 6401 4269 2379 113 39 3 chr1 47771145 47771507 -234422157 + THE1C LTR MaLR 1 375 0 10738 211 53 57 chr1 47771507 47772819 -234420845 - L1PB4 LINE L1 -2590 4269 2953 1894 161 3 3 chr1 47772819 47773105 -234420559 + AluSx SINE Alu 1 286 -26 2001 132 7 0 chr1 47773115 47773402 -234420262 + AluSg SINE Alu 1 289 -21 10738 211 53 57 chr1 47773402 47773687 -234419977 - L1PB4 LINE L1 -3915 2944 2659 1818 163 7 10 chr1 47773687 47773981 -234419683 + AluJo SINE Alu 1 293 -19 10738 211 53 57 chr1 47773981 47774385 -234419279 - L1PB4 LINE L1 -4200 2659 2255 1953 142 0 22 chr1 47774385 47774696 -234418968 - AluSx SINE Alu -8 304 1 10738 211 53 57 chr1 47774696 47775859 -234417805 - L1PB4 LINE L1 -4604 2255 1117 789 242 102 5 chr1 47776351 47776566 -234417098 + MIR SINE MIR 2 237 -25 6086 132 48 10 chr1 47777101 47779199 -234414465 + L1MA3 LINE L1 4125 6305 0 2421 81 7 3 chr1 47779486 47779795 -234413869 - AluSg SINE Alu 0 310 1 1621 232 175 22 chr1 47780101 47780787 -234412877 + LTR50 LTR ERVL 3 793 -2 1212 248 67 42 chr1 47782452 47782884 -234410780 + L2 LINE L2 2869 3311 -2 2256 99 7 3 chr1 47783343 47783635 -234410029 - AluSc SINE Alu -14 295 3 2356 98 0 7 chr1 47783637 47783943 -234409721 - AluSx SINE Alu -8 304 1 252 0 0 0 chr1 47784844 47784872 -234408792 + (TAG)n Simple_repeat Simple_repeat 2 29 0 373 275 28 123 chr1 47784886 47785137 -234408527 + MIR SINE MIR 20 246 -16 558 253 39 69 chr1 47785241 47785433 -234408231 - Charlie8 DNA MER1_type -2152 265 80 801 153 0 0 chr1 47785433 47785551 -234408113 - FLAM_C SINE Alu -15 118 1 558 253 39 69 chr1 47785551 47785591 -234408073 - Charlie8 DNA MER1_type -2337 80 40 538 314 62 18 chr1 47786178 47786246 -234407418 + L1MEd LINE L1 456 520 -5599 2397 90 0 7 chr1 47786246 47786546 -234407118 + AluSq SINE Alu 1 298 -15 538 314 62 18 chr1 47786546 47786814 -234406850 + L1MEd LINE L1 520 807 -5312 322 283 165 61 chr1 47787044 47787274 -234406390 + L2 LINE L2 2182 2435 -879 1944 117 13 20 chr1 47787447 47787745 -234405919 - AluSq SINE Alu -17 296 1 2626 145 43 76 chr1 47787944 47788565 -234405099 + L1MB7 LINE L1 5582 6182 -2 1671 196 0 14 chr1 47789368 47789664 -234404000 - AluJo SINE Alu -20 292 1 338 271 114 29 chr1 47789749 47789889 -234403775 + MIR SINE MIR 29 180 -82 2082 53 15 0 chr1 47789961 47790225 -234403439 + L1PB1 LINE L1 5884 6151 0 44 20 0 0 chr1 47790214 47790265 -234403399 + AT_rich Low_complexity Low_complexity 1 51 0 189 0 0 0 chr1 47790708 47790729 -234402935 + (A)n Simple_repeat Simple_repeat 1 21 0 280 194 468 0 chr1 47791100 47791224 -234402440 + L2 LINE L2 3132 3313 0 4296 169 47 46 chr1 47791373 47791540 -234402124 + L1MB8 LINE L1 5257 5422 -756 2254 107 0 10 chr1 47791540 47791838 -234401826 - AluSq SINE Alu -18 295 1 4296 169 47 46 chr1 47791838 47792142 -234401522 + L1MB8 LINE L1 5422 5724 -454 1669 171 7 0 chr1 47792142 47792416 -234401248 + AluJo SINE Alu 1 276 -36 225 0 0 0 chr1 47792416 47792441 -234401223 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 4296 169 47 46 chr1 47792441 47792888 -234400776 + L1MB8 LINE L1 5723 6178 0 229 273 141 30 chr1 47794338 47794437 -234399227 - MER5B DNA MER1_type -68 110 1 296 234 0 0 chr1 47794449 47794513 -234399151 + MER117 DNA MER1_type 16 79 -118 541 291 60 21 chr1 47795372 47795728 -234397936 + L1MC5 LINE L1 7505 7996 -46 617 214 28 195 chr1 47795971 47796330 -234397334 + L3 LINE CR1 931 1229 -348 227 221 135 10 chr1 47796428 47796532 -234397132 + MER103 DNA DNA 44 160 -6 435 207 0 0 chr1 47796534 47796616 -234397048 - L2 LINE L2 0 3313 3232 269 323 32 32 chr1 47796855 47796948 -234396716 + L2 LINE L2 3174 3266 -6 * 342 302 50 29 chr1 47796924 47797063 -234396601 + L3 LINE CR1 1226 1367 -210 488 100 18 67 chr1 47797207 47797547 -234396117 + (TA)n Simple_repeat Simple_repeat 1 323 0 3707 128 73 5 chr1 47797637 47798201 -234395463 - MER7C DNA MER2_type 0 602 1 195 338 84 0 chr1 47798218 47798289 -234395375 - L2 LINE L2 -27 3245 3169 222 301 129 21 chr1 47798575 47798668 -234394996 + L2 LINE L2 3137 3239 -33 2066 104 36 0 chr1 47799115 47799395 -234394269 + AluSx SINE Alu 1 290 -22 200 321 102 28 chr1 47800035 47800142 -234393522 + MIR SINE MIR 35 148 -72 23 33 0 0 chr1 47800582 47800612 -234393052 + AT_rich Low_complexity Low_complexity 1 30 0 1512 186 17 17 chr1 47801151 47801446 -234392218 + AluJo SINE Alu 1 295 -17 1879 152 45 0 chr1 47801813 47802103 -234391561 - AluSx SINE Alu -9 303 1 590 206 44 15 chr1 47803038 47803174 -234390490 + MIR SINE MIR 1 140 -122 22 0 0 0 chr1 47803242 47803264 -234390400 + AT_rich Low_complexity Low_complexity 1 22 0 298 218 92 0 chr1 47803264 47803351 -234390313 + MIR SINE MIR 168 262 0 2072 140 7 0 chr1 47803492 47803800 -234389864 + AluJb SINE Alu 1 310 -2 255 316 202 6 chr1 47803880 47804048 -234389616 + MIR SINE MIR 2 202 -60 255 234 0 0 chr1 47804097 47804144 -234389520 + L2 LINE L2 3186 3232 -40 2058 115 0 3 chr1 47804235 47804521 -234389143 + AluSx SINE Alu 1 285 -27 1945 147 88 43 chr1 47804529 47804972 -234388692 + L1MB8 LINE L1 5716 6178 0 184 83 0 0 chr1 47805488 47805512 -234388152 - MIR SINE MIR -152 110 87 293 185 136 12 chr1 47805530 47805611 -234388053 + MIR SINE MIR 172 262 0 22 56 0 0 chr1 47806301 47806337 -234387327 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr1 47808152 47808189 -234385475 + GC_rich Low_complexity Low_complexity 1 37 0 228 238 95 16 chr1 47809402 47809465 -234384199 - L2 LINE L2 -4 3268 3201 1355 248 101 33 chr1 47809521 47809771 -234383893 - L2 LINE L2 0 3313 3081 2162 84 25 7 chr1 47809771 47810057 -234383607 - AluSx SINE Alu -21 291 1 1355 248 101 33 chr1 47810057 47810510 -234383154 - L2 LINE L2 -232 3081 2567 774 160 0 38 chr1 47810536 47810667 -234382997 + FLAM_A SINE Alu 1 126 -7 1411 170 49 0 chr1 47810690 47810955 -234382709 + AluJo SINE Alu 29 306 -6 345 150 0 50 chr1 47811007 47811067 -234382597 - FLAM SINE Alu -11 122 72 525 209 81 47 chr1 47811285 47811457 -234382207 + L1MA9 LINE L1 6093 6270 -42 249 108 0 0 chr1 47811488 47811525 -234382139 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 921 136 0 0 chr1 47811532 47811664 -234382000 + FLAM_C SINE Alu 1 132 -1 316 365 36 7 chr1 47811731 47811868 -234381796 + MIR SINE MIR 21 161 -101 318 303 68 114 chr1 47812588 47812955 -234380709 - L2 LINE L2 -7 3265 2916 189 294 283 22 chr1 47813768 47813952 -234379712 - MIR SINE MIR -3 259 28 1243 257 88 8 chr1 47814102 47814464 -234379200 + MLT1I LTR MaLR 19 409 0 597 161 0 131 chr1 47814617 47814703 -234378961 + FLAM_C SINE Alu 2 62 -253 2322 105 0 0 chr1 47814703 47814997 -234378667 + AluSx SINE Alu 2 295 -17 597 161 0 131 chr1 47814997 47815073 -234378591 + FLAM_C SINE Alu 62 146 -169 853 196 0 14 chr1 47815203 47815346 -234378318 - FLAM_C SINE Alu -1 142 2 22 0 0 0 chr1 47815564 47815586 -234378078 + AT_rich Low_complexity Low_complexity 1 22 0 662 92 11 0 chr1 47815839 47815926 -234377738 + AluJ/FLAM SINE Alu 2 89 -223 870 211 0 6 chr1 47815926 47816082 -234377582 + AluJo/FRAM SINE Alu 138 292 -10 1807 134 58 0 chr1 47816379 47816655 -234377009 + AluJb SINE Alu 1 292 -20 193 209 154 38 chr1 47816760 47816840 -234376824 - MIR3 SINE MIR -28 180 115 198 314 81 0 chr1 47816889 47816975 -234376689 - L3b LINE CR1 -201 1382 1290 308 292 0 0 chr1 47817500 47817572 -234376092 - L2 LINE L2 0 3313 3242 928 203 22 87 chr1 47817596 47817638 -234376026 + MIR SINE MIR 2 45 -217 2242 85 0 55 chr1 47817638 47817945 -234375719 + AluSq SINE Alu 7 296 -17 928 203 22 87 chr1 47817945 47818074 -234375590 + MIR SINE MIR 45 151 -111 1947 186 87 23 chr1 47818074 47818467 -234375197 + MER47B DNA MER2_type 1 418 0 928 203 22 87 chr1 47818467 47818570 -234375094 + MIR SINE MIR 151 259 -3 546 159 0 53 chr1 47818640 47818753 -234374911 - AluSg/x SINE Alu -1 309 203 439 274 30 91 chr1 47818865 47819128 -234374536 + LTR16A LTR ERVL 204 450 0 2142 118 0 3 chr1 47819175 47819481 -234374183 + AluY SINE Alu 1 305 -6 2100 91 0 0 chr1 47819788 47820051 -234373613 - AluSx SINE Alu -3 309 47 1329 235 37 68 chr1 47820051 47820530 -234373134 - L1MC5 LINE L1 -133 7828 7366 2065 137 0 3 chr1 47820530 47820843 -234372821 - AluSx SINE Alu 0 312 1 1329 235 37 68 chr1 47820843 47820908 -234372756 - L1MC5 LINE L1 -595 7366 7301 365 270 93 75 chr1 47821202 47821428 -234372236 - MIR SINE MIR -2 260 31 369 355 75 25 chr1 47822172 47822223 -234371441 + L2 LINE L2 2009 2056 -1258 527 42 0 14 chr1 47822223 47822294 -234371370 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 2062 103 4 0 chr1 47822299 47822572 -234371092 - AluSx SINE Alu -38 274 1 369 355 75 25 chr1 47822572 47822667 -234370997 + L2 LINE L2 2059 2148 -1166 1311 153 64 71 chr1 47822667 47822993 -234370671 + MER33 DNA MER1_type 1 324 0 369 355 75 25 chr1 47822993 47823200 -234370464 + L2 LINE L2 2148 2387 -927 2293 167 38 44 chr1 47823225 47823705 -234369959 - MLT1D LTR MaLR 0 505 29 216 321 0 48 chr1 47824088 47824172 -234369492 + L2 LINE L2 3226 3305 -8 509 247 47 18 chr1 47824503 47824673 -234368991 + L1ME3A LINE L1 3806 3980 -2166 2413 74 0 3 chr1 47824749 47825046 -234368618 - AluSx SINE Alu -13 299 4 719 278 71 77 chr1 47825055 47825145 -234368519 + L1ME3A LINE L1 4256 4345 -1801 1028 200 0 6 chr1 47825145 47825320 -234368344 - FAM SINE Alu -1 174 1 719 278 71 77 chr1 47825320 47825721 -234367943 + L1ME3A LINE L1 4345 4744 -1402 2279 114 0 0 chr1 47825721 47826027 -234367637 - AluSx SINE Alu -6 306 1 719 278 71 77 chr1 47826027 47826197 -234367467 + L1ME3A LINE L1 4744 4914 -1232 1318 263 66 43 chr1 47826854 47827163 -234366501 + L1ME3A LINE L1 4942 5242 -928 2084 100 4 4 chr1 47827163 47827484 -234366180 - AluSg SINE Alu 0 322 2 1318 263 66 43 chr1 47827484 47827710 -234365954 + L1ME3A LINE L1 5242 5461 -709 2418 59 3 7 chr1 47827710 47828017 -234365647 + AluY SINE Alu 1 306 -5 1318 263 66 43 chr1 47828017 47828458 -234365206 + L1ME3A LINE L1 5461 5940 -230 2442 78 0 0 chr1 47828461 47828754 -234364910 + AluSc SINE Alu 1 293 -16 334 273 0 0 chr1 47829088 47829165 -234364499 + MER34 LTR ERV1 1 77 -465 1974 148 3 0 chr1 47829168 47829466 -234364198 + AluJo SINE Alu 6 304 -8 2018 119 4 0 chr1 47829502 47829791 -234363873 - AluSq SINE Alu 0 302 13 262 328 24 24 chr1 47829873 47829998 -234363666 + MER34 LTR ERV1 138 262 -280 430 290 97 27 chr1 47830174 47830360 -234363304 + MER34 LTR ERV1 315 513 -29 231 88 0 0 chr1 47830451 47830485 -234363179 + (A)n Simple_repeat Simple_repeat 1 34 0 307 340 0 7 chr1 47831930 47832074 -234361590 - L1M4 LINE L1 -2323 3823 3681 2190 125 0 13 chr1 47832279 47832582 -234361082 + AluSx SINE Alu 1 299 -13 1733 144 43 7 chr1 47833280 47833557 -234360107 + AluJb SINE Alu 1 287 -25 387 0 0 0 chr1 47833557 47833600 -234360064 + (GA)n Simple_repeat Simple_repeat 2 44 0 788 251 121 55 chr1 47833813 47834159 -234359505 + MLT1J LTR MaLR 108 476 -35 1821 162 7 0 chr1 47834231 47834521 -234359143 + AluJo SINE Alu 20 311 -1 213 94 0 0 chr1 47834521 47834553 -234359111 + (GA)n Simple_repeat Simple_repeat 1 32 0 190 308 125 58 chr1 47834563 47834667 -234358997 - MIR SINE MIR -132 130 20 2425 175 54 42 chr1 47835608 47835772 -234357892 + MLT1D LTR MaLR 1 162 -343 2498 121 132 5 chr1 47835772 47836152 -234357512 + MSTA LTR MaLR 1 428 0 2425 175 54 42 chr1 47836152 47836484 -234357180 + MLT1D LTR MaLR 162 503 -2 1951 144 3 3 chr1 47836595 47836887 -234356777 - AluSx SINE Alu -20 292 1 1109 138 17 145 chr1 47836944 47837234 -234356430 + L1MD3 LINE L1 6777 7029 -966 979 143 22 16 chr1 47837331 47837513 -234356151 + L1MC3 LINE L1 6999 7181 -604 1129 122 0 50 chr1 47837513 47837693 -234355971 - AluJo SINE Alu -141 171 1 591 180 0 36 chr1 47838040 47838151 -234355513 - FLAM_A SINE Alu -11 131 25 275 241 107 45 chr1 47838580 47838664 -234355000 - MIR3 SINE MIR -5 203 109 2186 113 10 0 chr1 47838664 47838974 -234354690 - AluSq SINE Alu 0 313 1 275 241 107 45 chr1 47838974 47839001 -234354663 - MIR3 SINE MIR -99 109 85 1984 123 7 7 chr1 47839120 47839396 -234354268 + AluSx SINE Alu 1 276 -36 450 0 0 0 chr1 47839401 47839451 -234354213 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 373 377 58 19 chr1 47839671 47839825 -234353839 - MER91A DNA MER1_type -22 174 15 493 333 82 51 chr1 47840216 47840630 -234353034 + MLT1K LTR MaLR 162 588 0 303 200 0 0 chr1 47841096 47841151 -234352513 + L1MC4 LINE L1 6649 6703 -1339 229 65 0 0 chr1 47841123 47841169 -234352495 + LTR66 LTR ERVL 394 439 -171 * 785 194 0 0 chr1 47891456 47891590 -234302074 + FRAM SINE Alu 22 155 -21 465 192 0 93 chr1 47891683 47891800 -234301864 + L1ME4a LINE L1 5964 6062 -59 2208 112 10 10 chr1 47891800 47892112 -234301552 - AluSx SINE Alu 0 312 1 465 192 0 93 chr1 47892112 47892166 -234301498 + L1ME4a LINE L1 6062 6119 -2 2325 75 0 4 chr1 47892176 47892478 -234301186 - AluSc SINE Alu 0 301 1 23 0 0 0 chr1 47892945 47892968 -234300696 + AT_rich Low_complexity Low_complexity 1 23 0 2231 89 10 7 chr1 47893362 47893694 -234299970 + AluY SINE Alu 1 311 0 2391 72 26 10 chr1 47894547 47894853 -234298811 + AluSq SINE Alu 2 312 -1 1696 193 7 7 chr1 47896031 47896327 -234297337 + AluJo SINE Alu 3 298 -14 457 200 57 9 chr1 47896672 47896777 -234296887 - L2 LINE L2 0 3313 3204 324 275 50 8 chr1 47896781 47896901 -234296763 - L3 LINE CR1 -258 1319 1195 563 200 196 22 chr1 47897020 47897245 -234296419 - L1ME4a LINE L1 -4 6117 5854 1914 164 7 0 chr1 47897281 47897580 -234296084 + AluJb SINE Alu 7 307 -5 412 313 71 73 chr1 47898402 47898770 -234294894 - L2 LINE L2 -2 3270 2904 932 288 74 50 chr1 47898891 47899485 -234294179 - L2 LINE L2 -559 2755 2148 279 91 109 0 chr1 47899486 47899541 -234294123 + L1MB3 LINE L1 6112 6172 -11 2067 116 42 36 chr1 47899574 47899909 -234293755 - MER1B DNA MER1_type 0 337 1 534 202 40 0 chr1 47899953 47900052 -234293612 + FRAM SINE Alu 59 161 -15 259 336 128 36 chr1 47900061 47900499 -234293165 - L2 LINE L2 -1240 2074 1597 1852 170 31 102 chr1 47900771 47901180 -234292484 + MLT1D LTR MaLR 1 364 -141 2012 153 0 3 chr1 47901180 47901481 -234292183 - AluJb SINE Alu -12 300 1 1852 170 31 102 chr1 47901481 47901613 -234292051 + MLT1D LTR MaLR 364 504 -1 2105 199 196 54 chr1 47902247 47902819 -234290845 - MLT1E1 LTR MaLR -1 653 1 183 257 99 112 chr1 47903355 47903507 -234290157 + L2 LINE L2 2596 2745 -569 281 331 39 28 chr1 47903627 47903808 -234289856 + L2 LINE L2 2877 3059 -213 363 117 0 0 chr1 47904199 47904259 -234289405 + Alu SINE Alu 243 302 0 484 199 76 15 chr1 47904648 47904779 -234288885 - L2 LINE L2 -14 3299 3161 2708 173 27 34 chr1 47904809 47905272 -234288392 - L1MB7 LINE L1 -23 6161 5696 183 42 0 0 chr1 47905272 47905296 -234288368 + (TATG)n Simple_repeat Simple_repeat 1 24 0 2708 173 27 34 chr1 47905296 47905512 -234288152 - L1MB7 LINE L1 -488 5696 5480 1815 152 50 0 chr1 47905512 47905795 -234287869 - AluJb SINE Alu -15 297 1 2708 173 27 34 chr1 47905795 47906331 -234287333 - L1MB7 LINE L1 -704 5480 4730 2105 125 3 7 chr1 47907005 47907310 -234286354 - AluSp SINE Alu -9 304 1 2412 92 20 0 chr1 47907515 47907820 -234285844 + AluSx SINE Alu 1 311 -1 182 271 17 17 chr1 47908818 47908877 -234284787 - L2 LINE L2 -7 3306 3248 1788 172 0 23 chr1 47909636 47909939 -234283725 + AluJo SINE Alu 1 296 -16 923 141 31 31 chr1 47909996 47910159 -234283505 - AluJo SINE Alu -149 163 1 182 220 0 60 chr1 47910234 47910284 -234283380 - L2 LINE L2 -1 3312 3266 444 217 114 36 chr1 47910291 47910457 -234283207 - L1ME LINE L1 -395 5726 5548 845 285 120 71 chr1 47912307 47912799 -234280865 + MARNA DNA Mariner 9 524 -62 2121 87 76 0 chr1 47913778 47914055 -234279609 + AluY SINE Alu 1 298 -13 190 271 104 21 chr1 47916885 47916981 -234276683 + MIR SINE MIR 36 139 -123 2134 177 55 12 chr1 47917779 47918197 -234275467 - MER63B DNA MER1_type 0 436 1 1358 205 123 16 chr1 47920123 47920498 -234273166 + L1MC4 LINE L1 7619 8033 -9 522 277 67 46 chr1 47920498 47920666 -234272998 + L2 LINE L2 2076 2239 -1075 2113 123 0 7 chr1 47920666 47920985 -234272679 - AluSx SINE Alu 0 312 1 522 277 67 46 chr1 47920985 47921144 -234272520 + L2 LINE L2 2239 2410 -904 2530 62 0 10 chr1 47922249 47922554 -234271110 - AluY SINE Alu -9 302 1 270 259 77 24 chr1 47922975 47923145 -234270519 + L1MEc LINE L1 2059 2237 -4159 340 194 30 0 chr1 47923310 47923377 -234270287 + FLAM_A SINE Alu 50 118 -15 413 246 0 59 chr1 47923436 47923554 -234270110 - LTR33A LTR ERVL -1 522 412 338 300 23 31 chr1 47923617 47923747 -234269917 - MLT2E LTR ERVL -468 160 32 768 250 118 47 chr1 47923816 47923999 -234269665 + L1MEc LINE L1 2382 2551 -3664 2236 94 35 0 chr1 47923999 47924286 -234269378 + AluSg SINE Alu 1 297 -13 350 73 0 18 chr1 47924286 47924341 -234269323 + (TA)n Simple_repeat Simple_repeat 2 55 0 768 250 118 47 chr1 47924341 47924821 -234268843 + L1MEc LINE L1 2550 3123 -3092 231 230 0 14 chr1 47924818 47924892 -234268772 + L1M4 LINE L1 1062 1134 -5408 * 2469 73 0 13 chr1 47924897 47925211 -234268453 + AluY SINE Alu 1 310 -1 261 255 128 43 chr1 47925998 47926124 -234267540 - MIR SINE MIR -114 94 9 475 240 126 14 chr1 47926297 47926569 -234267095 - L1MEc LINE L1 -4024 2388 2070 638 256 100 62 chr1 47927487 47927808 -234265856 - L2 LINE L2 -1 3312 2980 185 217 22 0 chr1 47928077 47928123 -234265541 + L2 LINE L2 3225 3271 -1 465 303 97 22 chr1 47928166 47928250 -234265414 + L2 LINE L2 3025 3101 -212 1869 161 3 19 chr1 47928250 47928567 -234265097 - AluJo SINE Alu 0 312 1 465 303 97 22 chr1 47928567 47928749 -234264915 + L2 LINE L2 3101 3311 -2 628 261 17 6 chr1 47928783 47928963 -234264701 + MIR SINE MIR 68 249 -13 3574 124 4 28 chr1 47930627 47931167 -234262497 + MER1A DNA MER1_type 1 527 0 418 236 68 27 chr1 47931881 47932029 -234261635 - MIR SINE MIR -78 184 31 236 192 19 0 chr1 47932484 47932536 -234261128 + MIR SINE MIR 81 133 -75 3803 176 112 4 chr1 47932786 47933645 -234260019 + L1MB7 LINE L1 5227 6171 -13 351 0 0 0 chr1 47933646 47933685 -234259979 + (TG)n Simple_repeat Simple_repeat 2 40 0 2189 98 3 36 chr1 47933722 47933893 -234259771 - AluSg SINE Alu -15 295 137 2220 94 21 0 chr1 47933893 47934181 -234259483 - AluSx SINE Alu -18 294 1 2189 98 3 36 chr1 47934181 47934314 -234259350 - AluSg SINE Alu -173 137 1 1524 229 30 76 chr1 47934409 47934910 -234258754 - LTR33 LTR ERVL 0 521 44 370 294 73 59 chr1 47935305 47935477 -234258187 - MIR SINE MIR -50 212 35 2343 79 3 3 chr1 47935477 47935769 -234257895 - AluSc SINE Alu -17 292 1 370 294 73 59 chr1 47935769 47935800 -234257864 - MIR SINE MIR -227 35 6 1698 145 3 86 chr1 47936344 47936695 -234256969 + L1MB7 LINE L1 5674 5995 -189 829 149 0 85 chr1 47936733 47936868 -234256796 + L1MB7 LINE L1 5994 6110 -74 2078 134 13 0 chr1 47936868 47937173 -234256491 - AluSx SINE Alu -3 309 1 829 149 0 85 chr1 47937173 47937225 -234256439 + L1MB7 LINE L1 6110 6165 -19 358 331 16 0 chr1 47937423 47937550 -234256114 - L2 LINE L2 -248 3024 2896 1215 155 0 0 chr1 47937565 47937758 -234255906 + MER2 DNA MER2_type 18 210 -135 2669 14 0 0 chr1 47937815 47938125 -234255539 - AluYa5 SINE Alu 0 310 1 22 0 0 0 chr1 47938159 47938181 -234255483 + AT_rich Low_complexity Low_complexity 1 22 0 280 339 77 21 chr1 47938246 47938479 -234255185 - L2 LINE L2 -425 2889 2644 184 318 82 24 chr1 47939825 47939910 -234253754 - MIR SINE MIR -13 249 160 190 259 70 42 chr1 47939946 47940089 -234253575 - L2 LINE L2 0 3313 3167 1392 174 13 13 chr1 47940132 47940368 -234253296 - AluJo SINE Alu -76 236 1 321 325 35 9 chr1 47940370 47940484 -234253180 - L2 LINE L2 -248 3024 2908 191 292 10 42 chr1 47940454 47940550 -234253114 - MIR SINE MIR -85 123 31 * 309 304 9 27 chr1 47940829 47940941 -234252723 - L2 LINE L2 -27 3245 3136 2190 68 0 14 chr1 47941005 47941284 -234252380 - AluY SINE Alu -7 304 30 1905 143 0 0 chr1 47941384 47941657 -234252007 + AluSx SINE Alu 27 299 -13 354 282 120 89 chr1 47941657 47942104 -234251560 - L2 LINE L2 -193 3079 2576 212 283 168 9 chr1 47942079 47942192 -234251472 - MIR3 SINE MIR -73 135 5 * 1581 236 113 29 chr1 47942452 47942582 -234251082 + L1MC4 LINE L1 6511 6629 -1413 2104 117 21 0 chr1 47942582 47942872 -234250792 + AluSx SINE Alu 1 296 -16 1581 236 113 29 chr1 47942872 47943736 -234249928 + L1MC4 LINE L1 6629 7736 -306 213 359 194 0 chr1 47945019 47945122 -234248542 + L2 LINE L2 3150 3272 0 2046 146 20 55 chr1 47945538 47945942 -234247722 + MLT1B LTR MaLR 1 390 0 204 205 0 0 chr1 47946005 47946044 -234247620 - L2 LINE L2 -86 3227 3189 1818 194 36 132 chr1 47946519 47947567 -234246097 - L1 LINE L1 -2773 3373 2452 742 145 32 0 chr1 47947677 47947801 -234245863 - MER58B DNA MER1_type -1 340 213 2212 84 0 7 chr1 47948648 47948932 -234244732 + AluSg SINE Alu 22 303 -7 442 180 149 6 chr1 47949024 47949185 -234244479 + L1ME4a LINE L1 5938 6121 0 183 231 77 46 chr1 47949583 47949648 -234244016 - L2 LINE L2 -27 3245 3179 445 335 126 9 chr1 47950114 47950514 -234243150 - L2 LINE L2 -118 3195 2740 330 312 27 97 chr1 47950511 47950697 -234242967 - L2 LINE L2 -63 3209 3037 * 221 270 180 43 chr1 47950679 47950890 -234242774 + L2 LINE L2 2613 2852 -462 * 1415 77 0 0 chr1 47950911 47951081 -234242583 - AluSp SINE Alu -14 299 130 395 214 144 79 chr1 47951085 47951300 -234242364 + MER112 DNA MER1_type 27 255 -5 2190 58 0 4 chr1 47951504 47951780 -234241884 - AluSq SINE Alu -38 275 1 335 350 42 14 chr1 47951780 47951923 -234241741 + L2 LINE L2 3123 3269 -3 586 255 63 74 chr1 47953653 47953879 -234239785 - L2 LINE L2 -53 3219 2995 2426 57 0 25 chr1 47953879 47954197 -234239467 + AluSq SINE Alu 3 312 -1 586 255 63 74 chr1 47954197 47954241 -234239423 - L2 LINE L2 -277 2995 2952 430 225 176 22 chr1 47954657 47954839 -234238825 - L2 LINE L2 -16 3297 3088 2025 135 14 3 chr1 47955362 47955658 -234238006 - AluJb SINE Alu -6 306 8 253 271 14 14 chr1 47956470 47956540 -234237124 - L2 LINE L2 -14 3299 3230 455 275 158 36 chr1 47956875 47957097 -234236567 + MIR SINE MIR 14 262 0 1207 206 0 0 chr1 47957551 47957755 -234235909 - AluJo SINE Alu -22 290 87 2265 75 7 0 chr1 47957756 47958050 -234235614 - AluY SINE Alu -15 296 1 231 284 102 45 chr1 47958478 47958654 -234235010 - L2 LINE L2 -208 3105 2920 220 307 47 60 chr1 47958992 47959142 -234234522 - MIR3 SINE MIR -37 171 24 1336 139 5 10 chr1 47961319 47961528 -234232136 + AluJb SINE Alu 87 294 -18 2131 102 3 3 chr1 47961547 47961870 -234231794 - AluSp SINE Alu 0 323 1 857 194 97 0 chr1 47961898 47962084 -234231580 + MER20 DNA MER1_type 16 219 0 2322 92 0 0 chr1 47962753 47963057 -234230607 - AluSx SINE Alu -8 304 1 504 345 127 23 chr1 47963233 47963792 -234229872 - L2 LINE L2 -347 2967 2351 1450 279 75 10 chr1 47964329 47964809 -234228855 - MLT1J LTR MaLR 0 511 1 506 335 28 6 chr1 47964894 47965076 -234228588 - MIR SINE MIR -70 192 7 216 333 39 39 chr1 47965078 47965258 -234228406 - L2 LINE L2 -1153 2161 1982 1344 169 8 21 chr1 47965302 47965539 -234228125 + AluJo SINE Alu 1 234 -78 886 348 116 35 chr1 47965552 47966471 -234227193 - L2 LINE L2 -1407 1907 882 3696 145 42 17 chr1 47966471 47967190 -234226474 + L1MB4 LINE L1 5444 6180 0 886 348 116 35 chr1 47967190 47967371 -234226293 - L2 LINE L2 -2432 882 717 327 235 222 39 chr1 47967605 47967758 -234225906 - L1ME4a LINE L1 -111 6010 5830 1844 94 4 0 chr1 47968236 47968471 -234225193 + AluSx SINE Alu 60 295 -17 658 337 57 0 chr1 47970548 47970794 -234222870 + MIR SINE MIR 2 261 -1 526 295 109 0 chr1 47971002 47971195 -234222469 + MIR SINE MIR 19 232 -30 2086 149 144 20 chr1 47972213 47972670 -234220994 - MER34 LTR ERV1 -2 540 27 2102 105 4 0 chr1 47972798 47973074 -234220590 + AluSp SINE Alu 31 307 -6 183 42 0 0 chr1 47973243 47973267 -234220397 + (T)n Simple_repeat Simple_repeat 1 24 0 259 263 12 12 chr1 47973477 47973557 -234220107 - L1MEd LINE L1 -6035 84 5 2180 92 0 3 chr1 47973585 47973867 -234219797 - AluSc SINE Alu -8 301 21 273 344 97 0 chr1 47974134 47974288 -234219376 - L2 LINE L2 -159 3113 2945 400 316 84 21 chr1 47974495 47974685 -234218979 - L2 LINE L2 -557 2757 2556 1961 165 0 0 chr1 47974836 47975145 -234218519 + AluJb SINE Alu 1 309 -3 1281 176 20 52 chr1 47975293 47975453 -234218211 + L1MB7 LINE L1 4613 4777 -1369 2175 126 0 0 chr1 47975453 47975747 -234217917 + AluSx SINE Alu 1 294 -18 1281 176 20 52 chr1 47975747 47975933 -234217731 + L1MB7 LINE L1 4777 4948 -1198 1273 204 36 32 chr1 47975971 47976279 -234217385 - LTR53 LTR ERVL -22 497 189 225 136 0 0 chr1 47976467 47976511 -234217153 + L1MB7 LINE L1 4963 5006 -1140 409 214 31 51 chr1 47976564 47976760 -234216904 - L1M4 LINE L1 -1678 4468 4277 638 207 17 0 chr1 47976828 47976944 -234216720 - AluJb SINE Alu -57 255 138 1752 156 38 14 chr1 47977197 47977485 -234216179 + AluJo SINE Alu 1 295 -17 2327 112 0 3 chr1 47977653 47977958 -234215706 + AluSx SINE Alu 1 304 -8 260 270 113 0 chr1 47978173 47978288 -234215376 + L1ME LINE L1 5696 5823 -298 2046 119 0 20 chr1 47978295 47978598 -234215066 + AluSg SINE Alu 1 297 -13 293 179 51 26 chr1 47978772 47978850 -234214814 - MER116 DNA Mariner 0 80 1 282 73 0 0 chr1 47978860 47978901 -234214763 + (CA)n Simple_repeat Simple_repeat 2 42 0 765 231 159 37 chr1 47979397 47980110 -234213554 - L1ME3A LINE L1 -119 6051 5254 25 0 0 0 chr1 47980329 47980354 -234213310 + AT_rich Low_complexity Low_complexity 1 25 0 610 199 22 15 chr1 47980554 47980690 -234212974 + L1ME1 LINE L1 6025 6161 -5 714 158 179 20 chr1 47981212 47981509 -234212155 + L1MC5 LINE L1 7441 7784 -177 345 88 18 0 chr1 47981510 47981567 -234212097 + L1M4 LINE L1 4960 5017 -1129 1492 188 32 0 chr1 47981675 47982020 -234211644 + L1MB7 LINE L1 4977 5332 -814 933 158 68 0 chr1 47982021 47982167 -234211497 + FRAM SINE Alu 1 156 -20 3324 181 43 66 chr1 47982168 47982258 -234211406 + L1MB7 LINE L1 5322 5413 -771 837 129 7 0 chr1 47982258 47982389 -234211275 + L1MA7 LINE L1 6146 6286 -5 3324 181 43 66 chr1 47982389 47982779 -234210885 + L1MB7 LINE L1 5413 5810 -374 2836 177 56 9 chr1 47982779 47983315 -234210349 + MER68 LTR ERV1 1 561 -1 3324 181 43 66 chr1 47983315 47983499 -234210165 + L1MB7 LINE L1 5810 5965 -219 639 203 14 51 chr1 47983499 47983637 -234210027 + FLAM_A SINE Alu 1 133 0 3324 181 43 66 chr1 47983637 47983844 -234209820 + L1MB7 LINE L1 5965 6175 -9 384 228 15 52 chr1 47983858 47983870 -234209794 + L1MC5 LINE L1 7783 7794 -167 3105 191 6 50 chr1 47983870 47984523 -234209141 + MLT1E3 LTR MaLR 1 624 0 384 228 15 52 chr1 47984523 47984646 -234209018 + L1MC5 LINE L1 7794 7913 -48 1587 186 44 3 chr1 47984818 47985114 -234208550 - AluJo SINE Alu -4 308 1 514 301 40 0 chr1 47985679 47985827 -234207837 + MIR SINE MIR 31 180 -65 242 281 162 38 chr1 47986412 47986597 -234207067 - L2 LINE L2 -116 3156 2949 654 210 123 0 chr1 47986774 47986912 -234206752 + FRAM SINE Alu 1 153 -23 204 164 0 60 chr1 47986928 47986995 -234206669 + (TATAA)n Simple_repeat Simple_repeat 1 63 0 318 180 0 0 chr1 47987015 47987076 -234206588 + (CTA)n Simple_repeat Simple_repeat 2 62 0 329 184 92 0 chr1 47987076 47987152 -234206512 - MIR SINE MIR -7 255 173 230 163 23 0 chr1 47987152 47987195 -234206469 + 5S rRNA rRNA 1 44 -77 382 338 73 13 chr1 47987195 47987346 -234206318 - MIR SINE MIR -81 181 22 565 221 64 17 chr1 47987639 47987811 -234205853 + L1MB3 LINE L1 2548 2727 -3419 2600 84 15 17 chr1 47987814 47988218 -234205446 + L1MA2 LINE L1 5850 6252 -52 1265 224 61 114 chr1 47989030 47989162 -234204502 + L1MB3 LINE L1 2728 2865 -3281 2281 97 3 0 chr1 47989162 47989452 -234204212 - AluSg SINE Alu -19 291 1 1265 224 61 114 chr1 47989452 47989815 -234203849 + L1MB3 LINE L1 2865 3164 -2982 2229 95 7 3 chr1 47989815 47990109 -234203555 + AluSc SINE Alu 1 295 -14 1265 224 61 114 chr1 47990109 47990437 -234203227 + L1MB3 LINE L1 3164 3508 -2638 1833 133 15 89 chr1 47990439 47990570 -234203094 + AluSx SINE Alu 1 140 -172 7856 16 0 0 chr1 47990570 47992024 -234201640 + L1PA3 LINE L1 4697 6152 -3 1833 133 15 89 chr1 47992024 47992229 -234201435 + AluSx SINE Alu 140 312 0 567 206 26 39 chr1 47992232 47992387 -234201277 + L1MB3 LINE L1 3496 3648 -2498 290 286 88 23 chr1 47992445 47992616 -234201048 + L1MC4a LINE L1 5743 5924 -1884 306 0 0 0 chr1 47992630 47992664 -234201000 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr1 47992956 47992985 -234200679 + AT_rich Low_complexity Low_complexity 1 29 0 306 220 150 30 chr1 47993118 47993218 -234200446 + L1MB3 LINE L1 4702 4813 -1333 3902 134 28 46 chr1 47994252 47994992 -234198672 + L1MB3 LINE L1 5454 6180 -3 336 256 98 5 chr1 47995804 47995960 -234197704 - L1M2 LINE L1 -727 5435 5295 1649 198 19 13 chr1 47995969 47996277 -234197387 - AluJb SINE Alu -2 310 1 2504 70 0 0 chr1 47996916 47997216 -234196448 - AluY SINE Alu -11 300 1 610 217 22 22 chr1 47997257 47997395 -234196269 - FLAM_C SINE Alu -5 138 1 1300 239 47 31 chr1 47997395 47997905 -234195759 - L1M4 LINE L1 -864 5282 4765 7721 100 12 19 chr1 47997942 47999116 -234194548 - L1P LINE L1 -4980 1166 1 1170 186 32 50 chr1 47999127 47999407 -234194257 - L1MB7 LINE L1 -124 6060 5786 1661 174 51 7 chr1 47999407 47999683 -234193981 - AluJo SINE Alu -20 292 5 3385 155 5 53 chr1 47999692 48000331 -234193333 - LTR9 LTR ERV1 0 612 5 997 144 62 36 chr1 48000335 48000367 -234193297 - HUERS-P3 LTR ERV1 -1 8918 8888 3439 96 22 25 chr1 48000367 48000876 -234192788 - MER9 LTR ERVK -4 507 1 997 144 62 36 chr1 48000876 48001037 -234192627 - HUERS-P3 LTR ERV1 -31 8888 8720 946 140 6 6 chr1 48001219 48001397 -234192267 - PABL_A-int LTR ERV1 -2450 2565 2388 21143 138 25 37 chr1 48001405 48003440 -234190224 - PABL_A-int LTR ERV1 -473 6945 4974 2150 128 0 0 chr1 48003440 48003730 -234189934 - AluSq SINE Alu -23 290 1 21143 138 25 37 chr1 48003730 48005611 -234188053 - PABL_A-int LTR ERV1 -2444 4974 3073 2002 181 78 2 chr1 48005611 48006020 -234187644 + LTR8 LTR ERV1 1 440 -251 644 76 11 0 chr1 48006021 48006113 -234187551 - HUERS-P3b LTR ERV1 -4776 2642 2550 3258 174 48 5 chr1 48056113 48056612 -234137052 - MSTB-int LTR MaLR -1002 649 116 1737 171 21 0 chr1 48056612 48056899 -234136765 - AluJb SINE Alu -19 293 1 3258 174 48 5 chr1 48056899 48057021 -234136643 - MSTB-int LTR MaLR -1535 116 1 2422 172 57 7 chr1 48057021 48057427 -234136237 - MSTB LTR MaLR 0 426 1 447 203 0 28 chr1 48057653 48057779 -234135885 + LTR33A LTR ERVL 447 519 -4 288 258 34 22 chr1 48058220 48058309 -234135355 - MIR SINE MIR -70 192 103 262 243 131 75 chr1 48058517 48058624 -234135040 + LTR48 LTR ERV1 5 117 -670 * 1195 221 95 33 chr1 48058613 48059066 -234134598 + LTR29 LTR ERV1 137 595 0 2322 159 116 2 chr1 48059096 48059510 -234134154 + LOR1b LTR ERV1 1 461 0 1851 162 14 10 chr1 48060062 48060359 -234133305 + AluJb SINE Alu 1 298 -14 317 281 35 26 chr1 48060497 48060611 -234133053 + L2 LINE L2 2651 2765 -549 1337 177 63 41 chr1 48060764 48061063 -234132601 + AluJo SINE Alu 6 310 0 261 314 48 9 chr1 48061067 48061172 -234132492 + L2 LINE L2 2799 2907 -407 3126 215 28 43 chr1 48061490 48061959 -234131705 + L1M4 LINE L1 2806 3256 -2890 787 195 0 0 chr1 48061959 48062077 -234131587 + FLAM_C SINE Alu 1 118 -15 3126 215 28 43 chr1 48062077 48062547 -234131117 + L1M4 LINE L1 3256 3731 -2415 247 330 9 46 chr1 48062553 48062662 -234131002 + L2 LINE L2 2790 2894 -420 1925 132 0 48 chr1 48062741 48063052 -234130612 - AluSq SINE Alu -17 296 1 23 78 0 0 chr1 48063052 48063103 -234130561 + AT_rich Low_complexity Low_complexity 1 51 0 2597 208 112 15 chr1 48063105 48063693 -234129971 + MLT2F LTR ERVL 5 649 -14 263 233 195 19 chr1 48063731 48063890 -234129774 + L1ME4a LINE L1 5718 5904 -217 7519 112 11 14 chr1 48064082 48065124 -234128540 + HSMAR2 DNA Mariner 202 1242 -60 1746 169 0 27 chr1 48065124 48065420 -234128244 - AluJo SINE Alu -24 288 1 7519 112 11 14 chr1 48065420 48065481 -234128183 + HSMAR2 DNA Mariner 1242 1302 0 191 316 42 21 chr1 48065601 48065696 -234127968 - L2 LINE L2 -77 3236 3140 24 32 0 0 chr1 48066135 48066166 -234127498 + AT_rich Low_complexity Low_complexity 1 31 0 1286 122 0 11 chr1 48066219 48066407 -234127257 + AluJb SINE Alu 1 186 -126 401 149 55 32 chr1 48066417 48066514 -234127150 - L1ME LINE L1 -527 5594 5499 351 197 0 0 chr1 48066803 48066864 -234126800 + L2 LINE L2 3253 3313 0 1244 168 10 0 chr1 48067442 48067639 -234126025 - AluJo SINE Alu -107 205 7 345 82 0 0 chr1 48067647 48067696 -234125968 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1243 164 5 0 chr1 48067704 48067899 -234125765 - AluSp SINE Alu -9 304 109 413 115 0 125 chr1 48067899 48067995 -234125669 - L1MA5A LINE L1 -59 6238 6155 6644 176 31 3 chr1 48068214 48069375 -234124289 + MSTB-int LTR MaLR 459 1651 0 2318 151 43 69 chr1 48069375 48069556 -234124108 + MSTB LTR MaLR 1 185 -241 1643 171 3 35 chr1 48069556 48069871 -234123793 + AluJb SINE Alu 1 305 -7 2318 151 43 69 chr1 48069871 48070126 -234123538 + MSTB LTR MaLR 185 426 0 3605 221 31 23 chr1 48070126 48070922 -234122742 - MER21B LTR ERV1 -60 803 1 245 330 19 10 chr1 48070937 48071040 -234122624 - LTR33A LTR ERVL -361 162 59 1701 157 30 30 chr1 48071361 48071660 -234122004 + AluJo SINE Alu 1 299 -13 818 236 7 0 chr1 48071691 48071839 -234121825 + FAM SINE Alu 14 162 -23 32 57 0 0 chr1 48071865 48071918 -234121746 + AT_rich Low_complexity Low_complexity 1 53 0 1422 304 70 76 chr1 48071946 48072399 -234121265 - ERVL LTR ERVL -913 4851 4404 2417 104 0 0 chr1 48072399 48072708 -234120956 + AluSx SINE Alu 1 309 -3 1422 304 70 76 chr1 48072708 48073059 -234120605 - ERVL LTR ERVL -1360 4404 4052 8005 155 48 31 chr1 48073066 48073867 -234119797 + L1MCa LINE L1 4 790 -5636 219 36 0 0 chr1 48073867 48073895 -234119769 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8005 155 48 31 chr1 48073895 48074661 -234119003 + L1MCa LINE L1 790 1598 -4828 937 147 86 37 chr1 48074661 48074824 -234118840 + AluJb SINE Alu 1 171 -141 438 63 95 0 chr1 48074826 48074889 -234118775 - L1MCa LINE L1 -4205 2221 2153 783 158 0 8 chr1 48074889 48075009 -234118655 + AluJb SINE Alu 174 292 -20 1716 124 4 38 chr1 48075011 48075277 -234118387 + AluJo SINE Alu 2 258 -54 497 111 42 0 chr1 48075297 48075369 -234118295 + L1MCa LINE L1 1588 1662 -4764 1219 199 35 9 chr1 48075369 48075543 -234118121 + AluJb SINE Alu 1 184 -128 191 86 0 29 chr1 48075543 48075578 -234118086 + (TGGGGG)n Simple_repeat Simple_repeat 1 34 0 1219 199 35 9 chr1 48075578 48075629 -234118035 + AluJb SINE Alu 184 232 -80 1210 127 19 9 chr1 48075629 48075842 -234117822 + L1MCa LINE L1 2263 2477 -3949 465 117 0 0 chr1 48075842 48075902 -234117762 + AluJb SINE Alu 233 292 -20 965 133 0 0 chr1 48075913 48076048 -234117616 + AluJo SINE Alu 1 135 -177 3598 192 42 27 chr1 48076054 48076934 -234116730 + L1MCa LINE L1 1743 2608 -3818 1822 179 137 16 chr1 48076934 48077314 -234116350 - MSTB LTR MaLR 0 426 1 3598 192 42 27 chr1 48077314 48077745 -234115919 + L1MCa LINE L1 2608 3089 -3337 2092 115 73 126 chr1 48077745 48078197 -234115467 + MSTA LTR MaLR 1 428 0 3598 192 42 27 chr1 48078197 48078435 -234115229 + L1MCa LINE L1 3089 3322 -3104 * 4321 175 25 14 chr1 48078434 48079275 -234114389 + L1M3f LINE L1 360 1209 -4119 3209 212 30 70 chr1 48079269 48080181 -234113483 + L1MCa LINE L1 3315 4185 -2241 * 1671 184 8 99 chr1 48080181 48080583 -234113081 - MLT1A1 LTR MaLR 0 365 1 3209 212 30 70 chr1 48080583 48080667 -234112997 + L1MCa LINE L1 4185 4271 -2155 2391 123 16 19 chr1 48080649 48081023 -234112641 + L1MC/D LINE L1 5381 5753 -580 * 1429 166 53 53 chr1 48081079 48081362 -234112302 + AluJo SINE Alu 7 289 -23 299 114 0 0 chr1 48081365 48081409 -234112255 + Tigger2 DNA MER2_type 1013 1056 -1662 2042 315 37 62 chr1 48081500 48082624 -234111040 - ERVL LTR ERVL -3501 2263 1171 1863 148 0 27 chr1 48082624 48082922 -234110742 - AluJb SINE Alu -22 290 1 2042 315 37 62 chr1 48082922 48083014 -234110650 - ERVL LTR ERVL -4593 1171 1078 12547 119 72 141 chr1 48083014 48083412 -234110252 + Tigger2 DNA MER2_type 1 425 -2293 1722 139 4 0 chr1 48083412 48083670 -234109994 - AluSx SINE Alu -10 302 44 12547 119 72 141 chr1 48083670 48084272 -234109392 + Tigger2 DNA MER2_type 425 1067 -1651 800 187 0 0 chr1 48084272 48084395 -234109269 + FRAM SINE Alu 31 153 -23 12547 119 72 141 chr1 48084395 48084572 -234109092 + Tigger2 DNA MER2_type 1067 1255 -1463 990 135 0 0 chr1 48084572 48084705 -234108959 + FLAM_C SINE Alu 1 133 0 12547 119 72 141 chr1 48084705 48085555 -234108109 + Tigger2 DNA MER2_type 1255 1901 -817 2304 44 3 53 chr1 48085555 48085876 -234107788 + AluY SINE Alu 1 305 -6 12547 119 72 141 chr1 48085876 48086638 -234107026 + Tigger2 DNA MER2_type 1901 2714 -4 1713 181 0 3 chr1 48087545 48087860 -234105804 - AluJb SINE Alu 0 314 1 216 97 0 0 chr1 48088689 48088720 -234104944 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1391 166 92 26 chr1 48088821 48089092 -234104572 - AluJb SINE Alu -21 291 3 29 60 0 0 chr1 48090052 48090102 -234103562 + AT_rich Low_complexity Low_complexity 1 50 0 3633 123 17 32 chr1 48090150 48090378 -234103286 - MER41B LTR ERV1 0 635 405 2246 53 14 11 chr1 48090378 48090689 -234102975 - AluY SINE Alu 0 312 1 3633 123 17 32 chr1 48090689 48091059 -234102605 - MER41B LTR ERV1 -230 405 45 1141 186 5 0 chr1 48091284 48091472 -234102192 + AluSg/x SINE Alu 109 297 -15 457 229 88 88 chr1 48091472 48091628 -234102036 - L1ME1 LINE L1 -110 6056 5898 3281 151 6 42 chr1 48091628 48091966 -234101698 - LTR26B LTR ERV1 -1 530 218 2077 121 0 23 chr1 48091966 48092273 -234101391 - AluSx SINE Alu -12 300 1 3281 151 6 42 chr1 48092273 48092484 -234101180 - LTR26B LTR ERV1 -313 218 1 457 229 88 88 chr1 48092484 48092519 -234101145 - L1ME1 LINE L1 -267 5899 5865 2362 108 0 0 chr1 48092579 48092886 -234100778 - AluSx SINE Alu -5 307 1 404 303 0 25 chr1 48092981 48093100 -234100564 + MER5B DNA MER1_type 60 175 -3 444 303 21 0 chr1 48093534 48093679 -234099985 + L1ME4a LINE L1 5740 5887 -234 27 51 0 17 chr1 48093801 48093827 -234099837 + AT_rich Low_complexity Low_complexity 1 26 -32 756 153 32 0 chr1 48093827 48093951 -234099713 + FLAM_C SINE Alu 1 128 -5 27 51 0 17 chr1 48093951 48093983 -234099681 + AT_rich Low_complexity Low_complexity 26 58 0 4019 132 61 33 chr1 48094081 48094753 -234098911 - LTR8 LTR ERV1 0 691 1 2489 82 3 0 chr1 48094894 48095200 -234098464 - AluSp SINE Alu -6 307 1 676 269 164 29 chr1 48095371 48095609 -234098055 - MLT1J LTR MaLR -118 393 124 514 211 77 45 chr1 48095630 48095786 -234097878 - MLT1J LTR MaLR -341 170 10 3079 131 93 52 chr1 48096016 48096587 -234097077 - LTR49 LTR ERV1 -1 594 1 1535 116 27 0 chr1 48096841 48097065 -234096599 + L1PA14 LINE L1 5930 6159 -2 767 196 38 19 chr1 48097274 48097432 -234096232 - MER77 LTR ERV1 -4 601 441 * 1199 206 24 28 chr1 48097407 48097654 -234096010 - MER21B LTR ERV1 -339 524 279 998 130 7 7 chr1 48097654 48097808 -234095856 - LTR23 LTR ERV1 0 437 284 17953 156 50 29 chr1 48097813 48097971 -234095693 - L1MA4A LINE L1 -1 7721 7568 1808 153 13 16 chr1 48097971 48098147 -234095517 - AluJo SINE Alu 0 312 136 2296 74 3 3 chr1 48098147 48098475 -234095189 - AluY SINE Alu 0 311 1 1808 153 13 16 chr1 48098475 48098611 -234095053 - AluJo SINE Alu -176 136 1 17953 156 50 29 chr1 48098611 48099202 -234094462 - L1MA4A LINE L1 -154 7568 6991 1473 109 21 63 chr1 48099202 48099441 -234094223 - AluSx SINE Alu -83 229 1 17953 156 50 29 chr1 48099441 48101143 -234092521 - L1MA4A LINE L1 -731 6991 5326 1664 198 3 3 chr1 48101143 48101436 -234092228 - AluJo SINE Alu -11 301 9 17953 156 50 29 chr1 48101436 48103234 -234090430 - L1MA4A LINE L1 -2396 5326 3567 2780 84 6 8 chr1 48103234 48103590 -234090074 + THE1A LTR MaLR 1 355 0 12337 96 13 1 chr1 48103590 48105151 -234088513 + THE1A-int LTR MaLR 1 1580 0 2831 93 3 0 chr1 48105151 48105505 -234088159 + THE1A LTR MaLR 1 355 0 17953 156 50 29 chr1 48105505 48106288 -234087376 - L1MA4A LINE L1 -4155 3567 2802 2146 88 56 0 chr1 48106288 48106572 -234087092 - AluSg SINE Alu -2 308 9 17953 156 50 29 chr1 48106572 48106636 -234087028 - L1MA4A LINE L1 -4920 2802 2741 2239 125 0 0 chr1 48106636 48106941 -234086723 - AluSx SINE Alu -7 305 1 17953 156 50 29 chr1 48106941 48107037 -234086627 - L1MA4A LINE L1 -4981 2741 2648 2252 125 3 0 chr1 48107037 48107348 -234086316 - AluSx SINE Alu 0 312 1 17953 156 50 29 chr1 48107348 48108988 -234084676 - L1MA4A LINE L1 -5074 2648 754 1052 157 0 0 chr1 48108990 48109137 -234084527 + AluSg/x SINE Alu 138 284 -26 2348 86 13 0 chr1 48109148 48109449 -234084215 + AluSp SINE Alu 1 305 -8 1993 139 10 0 chr1 48109488 48109776 -234083888 - AluSx SINE Alu -21 291 1 1180 140 18 70 chr1 48109777 48110005 -234083659 - LTR23 LTR ERV1 -221 216 1 1065 192 82 78 chr1 48110005 48110286 -234083378 - MER21B LTR ERV1 -581 282 1 1156 201 0 43 chr1 48110294 48110446 -234083218 + AluJo SINE Alu 1 141 -171 2701 107 21 19 chr1 48110446 48110820 -234082844 - THE1C LTR MaLR 0 375 1 1156 201 0 43 chr1 48110820 48110901 -234082763 + AluJo SINE Alu 141 224 -88 237 33 0 0 chr1 48110916 48110946 -234082718 + (A)n Simple_repeat Simple_repeat 1 30 0 984 182 24 0 chr1 48110966 48111136 -234082528 + MER20 DNA MER1_type 35 208 -11 4106 141 50 38 chr1 48111348 48111717 -234081947 - L1MB8 LINE L1 0 6178 5815 2233 95 34 0 chr1 48111717 48112012 -234081652 - AluSx SINE Alu -7 305 1 4106 141 50 38 chr1 48112012 48112194 -234081470 - L1MB8 LINE L1 -363 5815 5637 2415 78 3 0 chr1 48112194 48112490 -234081174 + AluY SINE Alu 1 297 -14 4106 141 50 38 chr1 48112490 48112738 -234080926 - L1MB8 LINE L1 -541 5637 5368 1641 148 58 7 chr1 48112814 48113091 -234080573 + AluJo SINE Alu 11 301 -11 2454 92 0 0 chr1 48113354 48113659 -234080005 + AluSg SINE Alu 3 307 -3 1011 208 0 17 chr1 48114874 48115047 -234078617 + FAM SINE Alu 1 170 -5 207 100 0 0 chr1 48115226 48115256 -234078408 + (A)n Simple_repeat Simple_repeat 1 30 0 2155 131 0 6 chr1 48115258 48115593 -234078071 + AluSq SINE Alu 1 313 0 1623 209 150 15 chr1 48115742 48116149 -234077515 + MLT1C LTR MaLR 6 467 0 487 246 193 53 chr1 48116245 48116432 -234077232 + MIR SINE MIR 20 232 -30 1048 161 6 0 chr1 48116486 48116647 -234077017 + AluSp SINE Alu 137 298 -15 186 326 0 0 chr1 48116681 48116730 -234076934 + L3 LINE CR1 1173 1221 -356 2049 138 7 0 chr1 48117274 48117564 -234076100 + AluSq SINE Alu 1 292 -21 793 178 0 0 chr1 48117637 48117755 -234075909 + AluJo SINE Alu 2 119 -193 23 33 0 0 chr1 48117755 48117785 -234075879 + AT_rich Low_complexity Low_complexity 1 30 0 821 469 70 15 chr1 48117785 48117878 -234075786 - AluJo SINE Alu -13 289 203 369 0 0 0 chr1 48117878 48117919 -234075745 + (TG)n Simple_repeat Simple_repeat 2 42 0 821 469 70 15 chr1 48117919 48118098 -234075566 - AluJo SINE Alu -99 203 2 1225 162 5 0 chr1 48118104 48118302 -234075362 + AluJo SINE Alu 114 312 0 1928 143 43 0 chr1 48118306 48118606 -234075058 + AluSq SINE Alu 1 313 0 2324 95 3 3 chr1 48118665 48118969 -234074695 + AluY SINE Alu 1 304 -7 762 233 117 10 chr1 48119865 48120071 -234073593 - MIR SINE MIR -3 259 32 266 158 0 0 chr1 48120381 48120419 -234073245 - MIR SINE MIR -58 150 113 257 254 70 0 chr1 48120425 48120496 -234073168 + MIR SINE MIR 149 224 -38 2781 94 28 5 chr1 48120859 48121254 -234072410 - MLT2A1 LTR ERVL -40 404 1 278 331 191 0 chr1 48121767 48121924 -234071740 + L2 LINE L2 3086 3272 0 281 311 203 0 chr1 48122509 48122657 -234071007 - L2 LINE L2 0 3313 3136 3341 179 72 43 chr1 48122869 48123542 -234070122 + L1MA7 LINE L1 6 702 -4626 2183 107 17 7 chr1 48123542 48123841 -234069823 + AluSx SINE Alu 1 302 -10 3341 179 72 43 chr1 48123841 48123871 -234069793 + L1MA7 LINE L1 702 730 -4598 * 8156 210 57 73 chr1 48123852 48124654 -234069010 + L1MA7 LINE L1 2354 3167 -3306 2343 101 3 0 chr1 48124654 48124961 -234068703 - AluSp SINE Alu -5 308 1 8156 210 57 73 chr1 48124961 48125276 -234068388 + L1MA7 LINE L1 3167 3486 -2987 2313 108 0 0 chr1 48125276 48125581 -234068083 + AluY SINE Alu 1 305 -6 8156 210 57 73 chr1 48125581 48127088 -234066576 + L1MA7 LINE L1 3486 5016 -1457 1605 134 48 58 chr1 48127088 48127379 -234066285 + AluJo SINE Alu 1 288 -24 8156 210 57 73 chr1 48127379 48127693 -234065971 + L1MA7 LINE L1 5016 5334 -1139 1670 169 8 4 chr1 48127693 48127959 -234065705 - AluJo SINE Alu -45 267 1 8156 210 57 73 chr1 48127959 48128613 -234065051 + L1MA7 LINE L1 5334 5855 -618 1668 171 10 43 chr1 48128613 48128918 -234064746 + AluJo SINE Alu 1 295 -17 8156 210 57 73 chr1 48128918 48129517 -234064147 + L1MA7 LINE L1 5855 6462 -11 3123 157 9 4 chr1 48129564 48130100 -234063564 + L1MB7 LINE L1 5646 6184 0 225 118 59 59 chr1 48130184 48130252 -234063412 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1922 84 92 4 chr1 48131439 48131700 -234061964 + AluY SINE Alu 2 285 -26 2179 87 0 7 chr1 48131744 48132020 -234061644 - AluSx SINE Alu -15 297 24 2090 103 0 17 chr1 48132290 48132608 -234061056 + AluSx SINE Alu 1 313 0 276 272 83 39 chr1 48132843 48132892 -234060772 - L1ME LINE L1 -330 5791 5746 1580 169 42 26 chr1 48132892 48133199 -234060465 - AluJb SINE Alu 0 312 1 276 272 83 39 chr1 48133199 48133329 -234060335 - L1ME LINE L1 -375 5746 5604 1954 150 3 0 chr1 48133379 48133666 -234059998 + AluSx SINE Alu 1 288 -24 32 26 0 0 chr1 48133666 48133705 -234059959 + AT_rich Low_complexity Low_complexity 1 39 0 638 224 103 6 chr1 48133727 48133883 -234059781 + MIR SINE MIR 92 262 0 450 285 97 111 chr1 48134254 48134941 -234058723 - L2 LINE L2 -4 3309 2643 412 168 159 37 chr1 48134989 48135096 -234058568 - L2 LINE L2 -17 3255 3136 322 295 41 8 chr1 48137087 48137209 -234056455 - MIR SINE MIR -74 188 63 2370 104 0 0 chr1 48137452 48137760 -234055904 - AluSx SINE Alu -4 308 1 572 239 84 62 chr1 48138852 48139078 -234054586 + MER102b DNA MER1_type 109 339 -2 1569 153 20 54 chr1 48139305 48139600 -234054064 + AluJo SINE Alu 14 298 -14 482 225 149 41 chr1 48139706 48140075 -234053589 - L1ME4a LINE L1 -1 6120 5712 446 254 103 38 chr1 48140246 48140431 -234053233 - MIR SINE MIR -18 244 48 2204 84 7 17 chr1 48140434 48140730 -234052934 - AluSx SINE Alu -19 293 1 386 299 30 15 chr1 48140993 48141127 -234052537 + MIR SINE MIR 84 219 -43 375 282 109 30 chr1 48141250 48141452 -234052212 - MLT1K LTR MaLR -191 397 180 2349 84 0 3 chr1 48142162 48142461 -234051203 + AluSq SINE Alu 13 310 -3 1377 139 8 53 chr1 48142586 48142830 -234050834 + AluJo SINE Alu 1 233 -79 270 293 13 0 chr1 48142831 48142906 -234050758 + L2 LINE L2 3188 3263 -9 325 295 62 16 chr1 48143378 48143507 -234050157 + MIR3 SINE MIR 36 170 -38 656 286 61 100 chr1 48143830 48144334 -234049330 + L2 LINE L2 2782 3270 -2 394 281 65 5 chr1 48144516 48144688 -234048976 + MIR SINE MIR 3 192 -32 212 146 0 21 chr1 48145393 48145441 -234048223 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 452 217 301 10 chr1 48145453 48145656 -234048008 - L1MC4 LINE L1 -141 7901 7640 1924 131 44 7 chr1 48145954 48146251 -234047413 + AluJo SINE Alu 1 308 -4 1051 123 111 0 chr1 48146265 48146436 -234047228 + MER46B DNA MER2_type 1 65 -171 1096 129 49 6 chr1 48146450 48146613 -234047051 - AluSx SINE Alu -138 174 5 254 242 50 110 chr1 48146706 48146987 -234046677 - L1M4 LINE L1 -958 5188 4925 191 227 23 0 chr1 48147053 48147097 -234046567 + L2 LINE L2 3227 3271 -1 793 166 26 127 chr1 48147680 48147812 -234045852 + MER3 DNA MER1_type 1 145 -64 2222 128 0 0 chr1 48147812 48148124 -234045540 - AluSx SINE Alu 0 312 1 793 166 26 127 chr1 48148124 48148175 -234045489 + MER3 DNA MER1_type 145 160 -49 2016 134 3 0 chr1 48148175 48148489 -234045175 + AluSx SINE Alu 1 315 0 793 166 26 127 chr1 48148489 48148532 -234045132 + MER3 DNA MER1_type 160 206 -3 2400 94 0 3 chr1 48148902 48149211 -234044453 - AluSg SINE Alu -2 308 1 476 220 174 0 chr1 48149214 48149346 -234044318 - MER5A DNA MER1_type 0 189 35 2222 114 0 7 chr1 48149679 48149977 -234043687 - AluSx SINE Alu -16 296 1 1936 135 35 0 chr1 48150031 48150313 -234043351 - AluJb SINE Alu -20 292 1 363 282 17 34 chr1 48150582 48150699 -234042965 - MER5A DNA MER1_type -30 159 45 242 338 41 35 chr1 48150583 48150728 -234042936 + MER5A DNA MER1_type 43 188 -1 * 299 207 135 18 chr1 48150842 48150953 -234042711 - MER113 DNA MER1_type? -397 124 1 530 312 103 40 chr1 48151043 48151472 -234042192 - L2 LINE L2 -4 3268 2813 293 246 215 31 chr1 48151635 48151765 -234041899 - L2 LINE L2 -562 2752 2599 247 260 98 16 chr1 48152003 48152126 -234041538 + L1MC4a LINE L1 5790 5922 -1886 223 319 142 15 chr1 48152885 48153058 -234040606 + MIR3 SINE MIR 5 198 -63 2437 77 0 3 chr1 48153216 48153515 -234040149 + AluSc SINE Alu 1 298 -11 420 282 107 32 chr1 48153632 48153943 -234039721 - L1ME LINE L1 -358 5806 5461 949 223 92 25 chr1 48154007 48154290 -234039374 - L1ME3 LINE L1 -18 6144 5843 637 94 18 176 chr1 48154457 48154566 -234039098 + L1MA5A LINE L1 6155 6230 -67 2428 57 0 0 chr1 48154566 48154872 -234038792 + AluY SINE Alu 1 306 0 637 94 18 176 chr1 48154872 48154931 -234038733 + L1MA5A LINE L1 6230 6297 0 464 241 22 56 chr1 48155712 48155944 -234037720 + L2 LINE L2 1821 2120 -1194 838 319 146 38 chr1 48156025 48156837 -234036827 + L2 LINE L2 2347 3235 -78 2429 87 0 3 chr1 48156844 48157153 -234036511 - AluY SINE Alu -3 308 1 561 226 14 27 chr1 48157478 48157624 -234036040 + MIR SINE MIR 104 247 -15 2888 250 63 74 chr1 48157906 48159593 -234034071 + L1ME3A LINE L1 3163 4830 -1316 2047 119 3 7 chr1 48159603 48159924 -234033740 + AluSx SINE Alu 1 320 0 848 253 53 30 chr1 48159932 48160400 -234033264 + L1ME3A LINE L1 5055 5547 -617 396 272 18 0 chr1 48160411 48160541 -234033123 + L1P4 LINE L1 5597 5729 -432 602 265 52 20 chr1 48161605 48161854 -234031810 + L1ME3A LINE L1 5705 5961 -209 460 119 0 0 chr1 48162185 48162244 -234031420 - Alu SINE Alu -20 292 234 1024 143 0 0 chr1 48162344 48162522 -234031142 + AluSg/x SINE Alu 136 313 0 256 167 0 0 chr1 48162523 48162565 -234031099 + Charlie5 DNA MER1_type 165 206 -2406 2400 94 0 3 chr1 48162935 48163244 -234030420 - AluSg SINE Alu -2 308 1 476 220 174 0 chr1 48163247 48163379 -234030285 - MER5A DNA MER1_type 0 189 35 2222 114 0 7 chr1 48163712 48164010 -234029654 - AluSx SINE Alu -16 296 1 1936 135 35 0 chr1 48164064 48164346 -234029318 - AluJb SINE Alu -20 292 1 363 282 17 34 chr1 48164615 48164732 -234028932 - MER5A DNA MER1_type -30 159 45 242 338 41 35 chr1 48164616 48164761 -234028903 + MER5A DNA MER1_type 43 188 -1 * 299 207 135 18 chr1 48164875 48164986 -234028678 - MER113 DNA MER1_type? -397 124 1 530 312 103 40 chr1 48165076 48165505 -234028159 - L2 LINE L2 -4 3268 2813 293 246 215 31 chr1 48165668 48165798 -234027866 - L2 LINE L2 -562 2752 2599 247 260 98 16 chr1 48166036 48166159 -234027505 + L1MC4a LINE L1 5790 5922 -1886 223 319 142 15 chr1 48166918 48167091 -234026573 + MIR3 SINE MIR 5 198 -63 2247 111 0 0 chr1 48167249 48167546 -234026118 + AluSg SINE Alu 1 297 -13 2020 103 24 10 chr1 48168253 48168543 -234025121 + AluSx SINE Alu 1 294 -18 1435 182 7 61 chr1 48168588 48168885 -234024779 + AluJo SINE Alu 1 281 -31 411 153 0 187 chr1 48169418 48169461 -234024203 + L2 LINE L2 3190 3239 -74 2273 104 0 0 chr1 48169461 48169760 -234023904 - AluY SINE Alu -12 299 1 411 153 0 187 chr1 48169760 48169866 -234023798 + L2 LINE L2 3239 3311 -2 275 272 79 26 chr1 48169902 48170016 -234023648 - L2 LINE L2 -225 3047 2928 2056 114 25 0 chr1 48170263 48170544 -234023120 - AluSx SINE Alu -24 288 1 306 261 78 59 chr1 48170694 48170847 -234022817 - MARNA DNA Mariner -89 497 342 182 350 10 30 chr1 48171132 48171232 -234022432 - L2 LINE L2 -222 3050 2953 393 348 55 10 chr1 48171549 48171750 -234021914 - L2 LINE L2 -507 2807 2598 357 209 109 40 chr1 48171764 48171963 -234021701 + MER58B DNA MER1_type 47 340 -1 382 207 170 7 chr1 48172109 48172244 -234021420 + L2 LINE L2 2609 2765 -549 223 319 42 0 chr1 48172596 48172668 -234020996 + MIR SINE MIR 117 191 -71 26 0 0 0 chr1 48173657 48173683 -234019981 + GC_rich Low_complexity Low_complexity 1 26 0 31 44 0 0 chr1 48174082 48174127 -234019537 + GC_rich Low_complexity Low_complexity 1 45 0 314 272 299 14 chr1 48176020 48176167 -234017497 - MER5A DNA MER1_type 0 189 1 391 299 166 33 chr1 48177388 48177689 -234015975 + MER102b DNA MER1_type 1 341 0 341 264 223 31 chr1 48177867 48178060 -234015604 - MIR SINE MIR -32 230 1 229 224 0 0 chr1 48178384 48178433 -234015231 + MER58 DNA MER1_type 50 98 -117 2288 73 10 0 chr1 48178435 48178723 -234014941 - AluSq SINE Alu -22 291 1 453 198 12 12 chr1 48178796 48178882 -234014782 - FLAM_C SINE Alu -27 116 31 2916 161 204 8 chr1 48179325 48179952 -234013712 + Tigger2 DNA MER2_type 4 753 -1965 945 179 118 5 chr1 48179982 48180194 -234013470 + Tigger2 DNA MER2_type 2461 2696 -22 204 324 189 0 chr1 48181130 48181204 -234012460 - MIR SINE MIR -63 145 58 948 140 45 6 chr1 48181204 48181361 -234012303 + AluSg/x SINE Alu 127 289 -21 189 107 0 0 chr1 48181374 48181402 -234012262 + (T)n Simple_repeat Simple_repeat 1 28 0 499 165 13 0 chr1 48182515 48182594 -234011070 - AluJo SINE Alu -30 282 203 288 130 22 0 chr1 48182603 48182649 -234011015 - AluJo SINE Alu -159 143 97 1708 120 124 4 chr1 48183000 48183267 -234010397 - AluSg SINE Alu -9 301 3 251 351 155 6 chr1 48183926 48184100 -234009564 + L2 LINE L2 2439 2638 -676 381 188 0 12 chr1 48184103 48184183 -234009481 - L1MC1 LINE L1 -160 6173 6095 413 239 97 11 chr1 48186451 48186590 -234007074 + MIR SINE MIR 10 154 -63 470 287 308 20 chr1 48190063 48190757 -234002907 - L2 LINE L2 -1442 1872 979 634 176 118 8 chr1 48190768 48190887 -234002777 - AluJb SINE Alu -179 133 2 228 337 96 0 chr1 48191230 48191313 -234002351 - L2 LINE L2 -2987 327 237 1275 207 19 8 chr1 48191474 48191735 -234001929 + AluJo SINE Alu 14 277 -35 2157 121 3 0 chr1 48194075 48194365 -233999299 - AluSc SINE Alu -18 291 1 371 260 0 0 chr1 48194831 48194908 -233998756 - Tigger5 DNA MER2_type -2235 88 12 337 210 62 12 chr1 48194925 48195006 -233998658 + Tigger5 DNA MER2_type 2239 2323 0 1442 108 0 9 chr1 48195954 48196167 -233997497 + AluSc SINE Alu 1 211 -98 972 78 0 0 chr1 48196166 48196295 -233997369 + AluSc SINE Alu 161 289 -20 * 348 240 94 0 chr1 48196352 48196448 -233997216 - L2 LINE L2 -1955 1359 1255 338 265 72 0 chr1 48196448 48196531 -233997133 - L2 LINE L2 -2172 1142 1054 768 85 127 0 chr1 48196533 48196651 -233997013 - Tigger3b DNA MER2_type -128 1103 971 280 191 70 2 chr1 48196653 48196762 -233996902 + AluJo SINE Alu 1 141 -161 1921 91 76 0 chr1 48196785 48197060 -233996604 - AluSg SINE Alu -14 296 1 1714 174 110 23 chr1 48197206 48197597 -233996067 - Tigger3b DNA MER2_type -736 495 71 4823 156 61 46 chr1 48197598 48197929 -233995735 - L1MA4A LINE L1 -7 6998 6673 2107 85 10 13 chr1 48197929 48198235 -233995429 - AluSx SINE Alu -7 305 1 4823 156 61 46 chr1 48198235 48198476 -233995188 - L1MA4A LINE L1 -332 6673 6437 1698 171 0 13 chr1 48198476 48198786 -233994878 - AluJo SINE Alu -6 306 1 4823 156 61 46 chr1 48198786 48199413 -233994251 - L1MA4A LINE L1 -568 6437 5771 886 154 322 9 chr1 48199418 48199645 -233994019 - AluJo SINE Alu -14 298 1 11014 170 39 75 chr1 48199645 48199733 -233993931 - L1MA4A LINE L1 -1092 5756 5666 2186 100 7 3 chr1 48199733 48200032 -233993632 - AluSc SINE Alu -9 300 1 11014 170 39 75 chr1 48200032 48200242 -233993422 - L1MA4A LINE L1 -1182 5666 5450 378 0 0 0 chr1 48200242 48200284 -233993380 + (TA)n Simple_repeat Simple_repeat 2 43 0 2286 69 9 38 chr1 48200285 48200605 -233993059 - AluY SINE Alu 0 311 1 11014 170 39 75 chr1 48200605 48201270 -233992394 - L1MA4A LINE L1 -1398 5450 4763 699 224 0 0 chr1 48201270 48201404 -233992260 + AluSq/x SINE Alu 2 135 -178 11014 170 39 75 chr1 48201404 48201608 -233992056 - L1MA4A LINE L1 -2085 4763 4553 2256 104 0 0 chr1 48201608 48201917 -233991747 - AluSc SINE Alu 0 309 1 11014 170 39 75 chr1 48201917 48201998 -233991666 - L1MA4A LINE L1 -2295 4553 4471 2159 118 0 0 chr1 48201998 48202302 -233991362 - AluSx SINE Alu -8 304 1 11014 170 39 75 chr1 48202302 48202647 -233991017 - L1MA4A LINE L1 -2377 4471 4115 2309 84 0 0 chr1 48202647 48202945 -233990719 - AluSx SINE Alu -14 298 1 11014 170 39 75 chr1 48202945 48203819 -233989845 - L1MA4A LINE L1 -2733 4115 3212 2221 112 3 0 chr1 48203819 48204131 -233989533 - AluSp SINE Alu 0 313 1 11014 170 39 75 chr1 48204131 48205406 -233988258 - L1MA4A LINE L1 -3636 3212 1893 1451 161 96 0 chr1 48205406 48205667 -233987997 - AluJo SINE Alu -16 286 1 11014 170 39 75 chr1 48205667 48205840 -233987824 - L1MA4A LINE L1 -4955 1893 1715 2023 129 7 0 chr1 48205840 48206143 -233987521 - AluSp SINE Alu -8 305 1 11014 170 39 75 chr1 48206143 48206418 -233987246 - L1MA4A LINE L1 -5133 1715 1432 1903 140 14 0 chr1 48206418 48206704 -233986960 - AluSx SINE Alu -18 294 5 11014 170 39 75 chr1 48206704 48207373 -233986291 - L1MA4A LINE L1 -5416 1432 931 580 157 0 0 chr1 48207384 48207467 -233986197 - Tigger3b DNA MER2_type -1148 83 1 919 291 148 36 chr1 48207476 48207847 -233985817 - L2 LINE L2 -2415 899 571 1684 166 7 10 chr1 48207847 48208143 -233985521 + AluJb SINE Alu 9 303 -9 919 291 148 36 chr1 48208143 48208520 -233985144 - L2 LINE L2 -2743 571 67 189 299 85 76 chr1 48208854 48209065 -233984599 - L2 LINE L2 -1208 2106 1894 981 251 236 17 chr1 48209133 48209906 -233983758 + L2 LINE L2 2378 3313 0 818 188 15 74 chr1 48209982 48210184 -233983480 - MLT1A2 LTR MaLR 0 374 185 188 184 79 0 chr1 48210189 48210227 -233983437 + MIR SINE MIR 22 62 -146 206 221 263 0 chr1 48210338 48210433 -233983231 + MIR SINE MIR 137 256 -6 1701 146 26 56 chr1 48210433 48210567 -233983097 + AluJb SINE Alu 1 137 -175 2205 73 45 0 chr1 48210567 48210856 -233982808 + AluSg SINE Alu 1 302 -8 1701 146 26 56 chr1 48210856 48211023 -233982641 + AluJb SINE Alu 137 293 -19 365 313 82 0 chr1 48211389 48211523 -233982141 + LTR16B LTR ERVL 320 464 0 2117 118 0 6 chr1 48211554 48211867 -233981797 + AluSx SINE Alu 1 311 -1 5881 153 56 53 chr1 48211879 48212895 -233980769 + L1M4c LINE L1 18 1029 -5355 2109 99 3 7 chr1 48212895 48213197 -233980467 + AluSp SINE Alu 1 301 -12 5881 153 56 53 chr1 48213197 48213244 -233980420 + L1M4c LINE L1 1029 1074 -5310 709 221 0 0 chr1 48213244 48213375 -233980289 + FLAM_C SINE Alu 3 133 0 5881 153 56 53 chr1 48213375 48213579 -233980085 + L1M4c LINE L1 1074 1290 -5094 450 65 0 65 chr1 48213585 48213662 -233980002 + Alu SINE Alu 239 310 -1 1669 135 28 71 chr1 48213666 48213770 -233979894 + L1M4c LINE L1 1273 1380 -5004 2322 85 0 3 chr1 48213770 48214075 -233979589 + AluSx SINE Alu 1 304 -8 2143 69 3 56 chr1 48214075 48214394 -233979270 + AluY SINE Alu 1 303 -8 1669 135 28 71 chr1 48214394 48214652 -233979012 + L1M4c LINE L1 1378 1620 -4764 1294 180 67 25 chr1 48214652 48214935 -233978729 + AluJb SINE Alu 1 295 -17 706 217 0 0 chr1 48214994 48215123 -233978541 + FLAM_A SINE Alu 1 129 -4 2114 117 10 0 chr1 48215166 48215473 -233978191 + AluSx SINE Alu 1 310 -2 2170 225 55 52 chr1 48215474 48216108 -233977556 + L1M4c LINE L1 2534 3164 -3218 1700 168 3 32 chr1 48216108 48216319 -233977345 + AluJb SINE Alu 1 202 -110 2414 75 0 0 chr1 48216319 48216624 -233977040 + AluSq SINE Alu 1 305 -8 1700 168 3 32 chr1 48216624 48216728 -233976936 + AluJb SINE Alu 202 307 -5 2170 225 55 52 chr1 48216728 48216946 -233976718 + L1M4c LINE L1 3164 3392 -2990 1942 153 0 6 chr1 48216946 48217260 -233976404 + AluJb SINE Alu 1 312 0 2170 225 55 52 chr1 48217260 48217338 -233976326 + L1M4c LINE L1 3392 3468 -2914 1389 199 116 10 chr1 48217318 48217705 -233975959 + L1ME2 LINE L1 5540 5967 -197 * 1909 159 0 0 chr1 48217708 48218004 -233975660 + AluSx SINE Alu 1 296 -16 1007 194 0 5 chr1 48218849 48219040 -233974624 + AluJb SINE Alu 120 309 -3 675 183 73 22 chr1 48219040 48219177 -233974487 - FRAM SINE Alu -32 144 1 2035 125 3 0 chr1 48219376 48219671 -233973993 - AluSq SINE Alu -17 296 1 1795 231 167 33 chr1 48219676 48220276 -233973388 - L1MC4 LINE L1 0 8042 7523 2390 87 3 0 chr1 48220276 48220588 -233973076 + AluSp SINE Alu 1 313 0 195 42 0 0 chr1 48220592 48220616 -233973048 + (TA)n Simple_repeat Simple_repeat 2 25 0 1795 231 167 33 chr1 48220616 48220669 -233972995 - L1MC4 LINE L1 -521 7521 7296 2406 215 109 16 chr1 48220670 48221292 -233972372 - L1MC4 LINE L1 -904 7138 6459 2105 118 3 0 chr1 48221627 48221931 -233971733 - AluSx SINE Alu -7 305 1 729 164 55 23 chr1 48221955 48222083 -233971581 - FLAM_C SINE Alu -10 133 2 600 196 170 0 chr1 48222257 48222410 -233971254 - MER5A DNA MER1_type -2 187 9 356 256 167 39 chr1 48222566 48222722 -233970942 - L1MC5 LINE L1 -137 7824 7649 2180 102 0 13 chr1 48223893 48224196 -233969468 - AluSg SINE Alu -11 299 1 2217 107 3 0 chr1 48224205 48224514 -233969150 - AluSx SINE Alu -2 310 1 553 242 99 0 chr1 48224588 48224749 -233968915 + MER5B DNA MER1_type 2 178 0 472 245 88 19 chr1 48228661 48228820 -233964844 - MIR SINE MIR -36 226 57 2179 100 0 0 chr1 48228834 48229123 -233964541 - AluSx SINE Alu -23 289 1 261 241 72 0 chr1 48230470 48230553 -233963111 + (CATG)n Simple_repeat Simple_repeat 2 90 0 316 325 117 8 chr1 48230676 48230796 -233962868 - MIR SINE MIR -102 160 28 351 298 20 53 chr1 48233976 48234127 -233959537 + MIR SINE MIR 46 191 -71 362 355 81 5 chr1 48235287 48235498 -233958166 - MIR SINE MIR -16 246 20 250 219 16 0 chr1 48235584 48235648 -233958016 + L2 LINE L2 1642 1706 -1608 698 197 15 0 chr1 48235664 48235796 -233957868 - AluJo SINE Alu -177 135 2 604 195 0 0 chr1 48235818 48235936 -233957728 - AluSp/q SINE Alu -2 311 194 370 299 166 33 chr1 48236515 48236816 -233956848 + MER102b DNA MER1_type 1 341 0 353 264 228 36 chr1 48236994 48237187 -233956477 - MIR SINE MIR -32 230 1 226 224 0 0 chr1 48237511 48237560 -233956104 + MER58 DNA MER1_type 50 98 -117 2189 73 10 0 chr1 48237562 48237850 -233955814 - AluSq SINE Alu -22 291 1 434 215 0 0 chr1 48237923 48238002 -233955662 - FLAM SINE Alu -27 116 38 2861 161 204 8 chr1 48238452 48239079 -233954585 + Tigger2 DNA MER2_type 4 753 -1965 918 179 118 5 chr1 48239109 48239321 -233954343 + Tigger2 DNA MER2_type 2461 2696 -22 207 324 189 0 chr1 48240257 48240331 -233953333 - MIR SINE MIR -63 145 58 887 140 45 6 chr1 48240331 48240488 -233953176 + AluSg/x SINE Alu 129 291 -21 189 107 0 0 chr1 48240500 48240528 -233953136 + (T)n Simple_repeat Simple_repeat 1 28 0 468 158 26 0 chr1 48241641 48241717 -233951947 - AluJo SINE Alu -30 282 205 286 130 22 0 chr1 48241729 48241775 -233951889 - AluJo SINE Alu -159 143 97 1612 120 124 4 chr1 48242126 48242393 -233951271 - AluSg SINE Alu -9 301 3 276 351 155 6 chr1 48243052 48243226 -233950438 + L2 LINE L2 2439 2638 -676 395 200 0 12 chr1 48243229 48243314 -233950350 - L1MC1 LINE L1 -160 6173 6090 418 240 97 11 chr1 48245577 48245716 -233947948 + MIR SINE MIR 10 154 -63 513 282 308 20 chr1 48249191 48249885 -233943779 - L2 LINE L2 -1442 1872 979 586 172 121 9 chr1 48249896 48250012 -233943652 - AluJb SINE Alu -179 133 5 231 337 96 0 chr1 48250358 48250441 -233943223 - L2 LINE L2 -2987 327 237 1188 207 19 8 chr1 48250602 48250863 -233942801 + AluJo SINE Alu 14 277 -35 2054 121 3 0 chr1 48253203 48253493 -233940171 - AluSc SINE Alu -18 291 1 371 260 0 0 chr1 48253959 48254036 -233939628 - Tigger5 DNA MER2_type -2235 88 12 337 210 62 12 chr1 48254053 48254134 -233939530 + Tigger5 DNA MER2_type 2239 2323 0 1442 108 0 9 chr1 48255082 48255295 -233938369 + AluSc SINE Alu 1 211 -98 972 78 0 0 chr1 48255294 48255423 -233938241 + AluSc SINE Alu 161 289 -20 * 348 240 94 0 chr1 48255480 48255576 -233938088 - L2 LINE L2 -1955 1359 1255 338 265 72 0 chr1 48255576 48255659 -233938005 - L2 LINE L2 -2172 1142 1054 768 85 127 0 chr1 48255661 48255779 -233937885 - Tigger3b DNA MER2_type -128 1113 981 280 191 70 2 chr1 48255781 48255890 -233937774 + AluJo SINE Alu 1 141 -161 1921 91 76 0 chr1 48255913 48256188 -233937476 - AluSg SINE Alu -14 296 1 1714 174 110 23 chr1 48256334 48256725 -233936939 - Tigger3b DNA MER2_type -736 495 71 1257 151 121 51 chr1 48256726 48257057 -233936607 - L1MA4A LINE L1 -7 6296 5943 2113 85 7 10 chr1 48257057 48257352 -233936312 - AluSx SINE Alu -7 305 12 1231 191 85 0 chr1 48257363 48257635 -233936029 - AluJo SINE Alu -17 295 1 403 129 71 0 chr1 48257642 48257712 -233935952 + L2 LINE L2 2461 2535 -779 826 181 30 0 chr1 48257742 48257908 -233935756 - FRAM SINE Alu -9 167 1 181 286 18 0 chr1 48257911 48257967 -233935697 + L2 LINE L2 2848 2904 -410 315 0 0 0 chr1 48258012 48258047 -233935617 + (CA)n Simple_repeat Simple_repeat 2 36 0 354 250 192 17 chr1 48258048 48258168 -233935496 + L2 LINE L2 3167 3307 -6 351 289 50 56 chr1 48258476 48258656 -233935008 - MIR SINE MIR -50 212 34 195 100 0 0 chr1 48262130 48262160 -233931504 + (TTG)n Simple_repeat Simple_repeat 1 30 0 215 344 169 16 chr1 48262344 48262527 -233931137 + L2 LINE L2 3033 3243 -29 2261 116 18 60 chr1 48262747 48262929 -233930735 + THE1B LTR MaLR 1 160 -204 5800 45 12 7 chr1 48262929 48263709 -233929955 + SVA Other Other 645 1386 0 2261 116 18 60 chr1 48263709 48263906 -233929758 + THE1B LTR MaLR 160 364 0 210 348 79 11 chr1 48264887 48264976 -233928688 + MIR3 SINE MIR 3 97 -111 551 266 40 68 chr1 48265015 48265263 -233928401 + MIR SINE MIR 21 261 -1 2084 112 0 16 chr1 48265720 48266024 -233927640 + AluSg SINE Alu 1 299 -11 866 169 0 0 chr1 48266598 48266728 -233926936 - FLAM_A SINE Alu 0 133 4 419 257 84 45 chr1 48268095 48268274 -233925390 - MIR SINE MIR -37 225 40 184 200 0 25 chr1 48268722 48268762 -233924902 - MIR SINE MIR -62 200 162 521 259 39 69 chr1 48268831 48269063 -233924601 + MIR SINE MIR 32 256 -6 1959 112 42 0 chr1 48271676 48271961 -233921703 - AluSx SINE Alu -15 297 1 2204 96 3 0 chr1 48272061 48272363 -233921301 - AluSp SINE Alu -10 303 1 180 0 0 0 chr1 48272418 48272438 -233921226 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1880 129 39 0 chr1 48272446 48272726 -233920938 - AluSx SINE Alu -21 291 1 2019 122 0 0 chr1 48272738 48273032 -233920632 - AluSg SINE Alu -16 294 1 2057 108 27 0 chr1 48273053 48273349 -233920315 - AluSx SINE Alu -8 304 1 446 234 47 6 chr1 48273503 48273674 -233919990 + L1ME4a LINE L1 5707 5884 -237 1924 155 0 0 chr1 48273683 48273992 -233919672 + AluJo SINE Alu 1 309 -3 284 247 75 41 chr1 48274038 48274184 -233919480 + L1ME4a LINE L1 5970 6120 -1 920 166 0 18 chr1 48274219 48274382 -233919282 + FRAM SINE Alu 16 175 -1 1726 153 24 0 chr1 48274890 48275177 -233918487 + AluJb SINE Alu 2 295 -17 2308 90 0 3 chr1 48275469 48275780 -233917884 + AluSx SINE Alu 1 310 -2 1690 119 54 0 chr1 48275942 48276219 -233917445 + AluSq SINE Alu 1 292 -21 2062 100 16 23 chr1 48276222 48276532 -233917132 + AluSc SINE Alu 1 308 -1 447 263 53 47 chr1 48276572 48276762 -233916902 + MIR SINE MIR 71 261 -1 289 279 0 0 chr1 48276831 48276899 -233916765 + MIR SINE MIR 78 145 -63 282 304 174 28 chr1 48277196 48277449 -233916215 + L2 LINE L2 2811 3100 -172 391 221 11 53 chr1 48277832 48277927 -233915737 + MIR SINE MIR 136 226 -36 228 135 0 0 chr1 48277942 48277979 -233915685 + (CACCAT)n Simple_repeat Simple_repeat 5 41 0 193 226 16 65 chr1 48279775 48279837 -233913827 - MIR SINE MIR -80 182 124 269 237 21 75 chr1 48279948 48280041 -233913623 - MIR SINE MIR -51 211 124 552 296 69 1 chr1 48280228 48280405 -233913259 + MIR3 SINE MIR 11 205 -3 1842 118 72 0 chr1 48281061 48281340 -233912324 + AluSx SINE Alu 1 299 -13 1818 121 28 7 chr1 48281343 48281633 -233912031 + AluSx SINE Alu 1 296 -16 2054 117 0 3 chr1 48281641 48281932 -233911732 + AluSg SINE Alu 1 290 -20 493 283 99 31 chr1 48281996 48282219 -233911445 + MIR SINE MIR 18 255 -7 2248 101 3 0 chr1 48282503 48282809 -233910855 - AluSp SINE Alu -4 309 3 331 321 25 36 chr1 48282809 48283041 -233910623 + L2 LINE L2 2757 3049 -264 558 168 0 26 chr1 48283328 48283441 -233910223 + MER3 DNA MER1_type 64 126 -83 1317 144 55 140 chr1 48283441 48283775 -233909889 + MER3 DNA MER1_type 2234 2526 -98 1980 122 14 3 chr1 48283775 48284071 -233909593 + AluSx SINE Alu 1 299 -13 1317 144 55 140 chr1 48284071 48284158 -233909506 + MER3 DNA MER1_type 2526 2619 -5 436 311 25 8 chr1 48284164 48284286 -233909378 + L2 LINE L2 3149 3272 0 526 281 51 15 chr1 48284440 48284578 -233909086 - HsTC2 DNA Tc2 -1217 681 533 1946 136 3 0 chr1 48284578 48284872 -233908792 + AluSq SINE Alu 1 295 -18 526 281 51 15 chr1 48284872 48284929 -233908735 - HsTC2 DNA Tc2 -1365 533 479 252 269 26 0 chr1 48284917 48284995 -233908669 - HsTC2 DNA Tc2 -1599 299 220 * 238 279 43 71 chr1 48285413 48285553 -233908111 - L2 LINE L2 -189 3083 2948 1826 98 0 0 chr1 48285894 48286162 -233907502 - AluSq SINE Alu 0 308 41 1637 178 21 3 chr1 48286316 48286602 -233907062 - AluSx SINE Alu -21 291 1 216 0 0 0 chr1 48287842 48287866 -233905798 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 97 0 0 chr1 48287970 48288001 -233905663 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1916 229 79 62 chr1 48288953 48289168 -233904496 - MLT1E LTR MaLR -24 569 359 1861 138 27 0 chr1 48289168 48289466 -233904198 - AluSc SINE Alu -3 306 1 1916 229 79 62 chr1 48289466 48289810 -233903854 - MLT1E LTR MaLR -234 359 1 279 262 65 19 chr1 48289926 48290033 -233903631 + L2 LINE L2 2620 2731 -583 282 294 52 99 chr1 48290314 48290525 -233903139 - L2 LINE L2 -51 3221 3021 507 220 50 14 chr1 48291070 48291175 -233902489 + MER104 DNA Tc2 35 148 -1750 2406 73 0 0 chr1 48291175 48291475 -233902189 + AluY SINE Alu 1 300 -11 507 220 50 14 chr1 48291475 48291510 -233902154 + MER104 DNA Tc2 148 180 0 389 284 147 18 chr1 48291877 48292095 -233901569 - MIR SINE MIR -1 261 16 1337 166 12 20 chr1 48292177 48292424 -233901240 - AluJo SINE Alu -5 307 63 1470 282 175 31 chr1 48292689 48293363 -233900301 + L2 LINE L2 1961 2536 -777 2376 57 0 0 chr1 48293363 48293660 -233900004 + AluY SINE Alu 1 297 -14 1470 282 175 31 chr1 48293660 48294148 -233899516 + L2 LINE L2 2536 3302 -11 2185 118 0 3 chr1 48294148 48294461 -233899203 + AluSx SINE Alu 1 312 0 1470 282 175 31 chr1 48294461 48294475 -233899189 + L2 LINE L2 3302 3313 0 1378 121 79 68 chr1 48294533 48294632 -233899032 - MER33 DNA MER1_type -2272 313 217 2032 148 0 0 chr1 48294632 48294923 -233898741 + AluJo SINE Alu 3 293 -19 1378 121 79 68 chr1 48294923 48295134 -233898530 - MER33 DNA MER1_type -2368 217 1 331 246 67 8 chr1 48295352 48295460 -233898204 - MIR SINE MIR -46 162 52 2230 96 3 20 chr1 48295516 48295818 -233897846 - AluSc SINE Alu -12 297 1 213 344 104 0 chr1 48295960 48296085 -233897579 + MIR SINE MIR 29 166 -96 222 174 141 66 chr1 48296659 48296780 -233896884 - L2 LINE L2 -2 3311 3182 296 277 148 10 chr1 48298998 48299099 -233894565 + MIR SINE MIR 32 146 -62 245 280 59 19 chr1 48299263 48299391 -233894273 + MIR SINE MIR 23 152 -62 2976 9 0 0 chr1 48299400 48299717 -233893947 + AluYb8 SINE Alu 1 317 -1 318 255 85 25 chr1 48300777 48300931 -233892733 + MIR SINE MIR 10 175 -59 2394 93 0 3 chr1 48301004 48301304 -233892360 - AluSx SINE Alu -13 299 1 292 314 51 0 chr1 48302494 48302612 -233891052 + MIR3 SINE MIR 85 208 0 959 128 0 0 chr1 48302679 48302812 -233890852 - FLAM_C SINE Alu 0 133 1 3396 242 37 12 chr1 48303156 48303798 -233889866 + L1M4 LINE L1 2467 3144 -3002 2256 107 7 0 chr1 48303798 48304096 -233889568 + AluSx SINE Alu 1 300 -12 3396 242 37 12 chr1 48304096 48304446 -233889218 + L1M4 LINE L1 3144 3484 -2662 474 237 17 8 chr1 48304446 48304564 -233889100 - MIR3 SINE MIR -49 159 41 226 238 71 32 chr1 48305109 48305235 -233888429 + MIR3 SINE MIR 6 136 -72 216 308 37 9 chr1 48305424 48305531 -233888133 - MIR3 SINE MIR -51 157 48 237 230 40 100 chr1 48306135 48306235 -233887429 - MIR SINE MIR -71 137 44 471 223 116 51 chr1 48306752 48306967 -233886697 + L2 LINE L2 3078 3306 -7 347 276 159 75 chr1 48306975 48307665 -233885999 - L2 LINE L2 -9 3263 2514 357 309 74 6 chr1 48308083 48308245 -233885419 + MIR SINE MIR 47 219 -43 737 150 9 0 chr1 48308668 48308781 -233884883 - FLAM_C SINE Alu -24 119 6 2947 148 67 28 chr1 48309254 48309795 -233883869 - MER68 LTR ERV1 0 562 1 2647 32 0 6 chr1 48310814 48311125 -233882539 - AluY SINE Alu -2 309 1 284 289 171 13 chr1 48311761 48311913 -233881751 + MARNA DNA Mariner 10 185 -401 339 320 39 16 chr1 48312124 48312252 -233881412 - MARNA DNA Mariner -406 180 50 451 226 51 82 chr1 48312694 48312889 -233880775 + MIR SINE MIR 66 254 -8 258 227 80 0 chr1 48313020 48313095 -233880569 - MIR SINE MIR -25 237 157 6138 160 86 25 chr1 48313112 48313178 -233880486 + Charlie1a DNA MER1_type 1 62 -2699 1745 82 142 37 chr1 48313178 48313446 -233880218 - AluY SINE Alu -8 303 8 6138 160 86 25 chr1 48313446 48313691 -233879973 + Charlie1a DNA MER1_type 62 291 -2470 2375 93 0 3 chr1 48313691 48313992 -233879672 - AluSq SINE Alu -13 300 1 6138 160 86 25 chr1 48313992 48314970 -233878694 + Charlie1a DNA MER1_type 291 1370 -85 2046 118 38 3 chr1 48315028 48315315 -233878349 + AluSx SINE Alu 1 297 -15 1718 134 92 18 chr1 48315653 48315937 -233877727 + AluJo SINE Alu 1 305 -7 460 168 44 35 chr1 48316017 48316130 -233877534 + MER112 DNA MER1_type 17 130 -130 220 0 27 54 chr1 48316135 48316172 -233877492 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2072 64 14 46 chr1 48316172 48316273 -233877391 - AluY SINE Alu -37 274 171 3832 89 2 8 chr1 48316273 48316787 -233876877 - MER9 LTR ERVK 0 511 1 2072 64 14 46 chr1 48316787 48316968 -233876696 - AluY SINE Alu -140 171 1 1903 160 47 71 chr1 48317236 48317582 -233876082 + MSTD LTR MaLR 1 354 -42 1698 148 10 28 chr1 48317582 48317873 -233875791 + AluJb SINE Alu 1 286 -26 180 0 0 0 chr1 48317873 48317893 -233875771 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 1903 160 47 71 chr1 48317893 48317951 -233875713 + MSTD LTR MaLR 352 396 0 208 286 36 62 chr1 48317971 48318083 -233875581 - MIR SINE MIR -75 187 79 23 0 0 0 chr1 48319235 48319258 -233874406 + AT_rich Low_complexity Low_complexity 1 23 0 328 39 0 39 chr1 48320231 48320283 -233873381 + (TA)n Simple_repeat Simple_repeat 1 50 0 224 58 13 142 chr1 48320423 48320578 -233873086 + (TA)n Simple_repeat Simple_repeat 2 136 0 305 116 14 82 chr1 48320647 48320793 -233872871 + (TA)n Simple_repeat Simple_repeat 1 136 0 2129 116 0 0 chr1 48320793 48321078 -233872586 - AluSx SINE Alu -27 285 1 470 264 108 32 chr1 48321417 48321758 -233871906 + L1M4 LINE L1 3122 3488 -2658 453 36 0 0 chr1 48322177 48322232 -233871432 + (CA)n Simple_repeat Simple_repeat 2 56 0 2199 88 11 3 chr1 48322236 48322521 -233871143 - AluSc SINE Alu -20 289 3 200 328 0 0 chr1 48322561 48322622 -233871042 - L2 LINE L2 -5 3267 3207 2244 93 7 0 chr1 48322940 48323230 -233870434 + AluSx SINE Alu 6 297 -15 208 324 19 0 chr1 48323429 48323534 -233870130 + MIR SINE MIR 135 241 -21 519 267 50 68 chr1 48323669 48323890 -233869774 - MIR SINE MIR -1 261 45 24 0 0 0 chr1 48324939 48324963 -233868701 + AT_rich Low_complexity Low_complexity 1 24 0 456 225 56 21 chr1 48326032 48326155 -233867509 + L2 LINE L2 3163 3293 -20 2247 82 37 3 chr1 48326155 48326449 -233867215 - AluSc SINE Alu -5 304 1 456 225 56 21 chr1 48326449 48326467 -233867197 + L2 LINE L2 3293 3309 -4 873 76 0 17 chr1 48326575 48326683 -233866981 + AluSg/x SINE Alu 186 293 -17 6549 29 0 3 chr1 48326683 48327437 -233866227 + L1PA5 LINE L1 5403 6154 0 322 271 110 61 chr1 48327467 48327779 -233865885 + L1MC4a LINE L1 5569 5805 -316 242 300 13 0 chr1 48328283 48328371 -233865293 + MIR SINE MIR 63 140 -68 180 0 0 0 chr1 48328665 48328685 -233864979 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 302 299 67 0 chr1 48328743 48328877 -233864787 + MIR3 SINE MIR 3 145 -63 1437 45 28 6 chr1 48329006 48329183 -233864481 + MLT2A2 LTR ERVL 263 443 -10 1734 184 8 50 chr1 48329184 48329537 -233864127 + L1MB1 LINE L1 5783 6119 -49 2345 100 0 3 chr1 48329537 48329836 -233863828 + AluSq SINE Alu 1 298 -15 1734 184 8 50 chr1 48329836 48329884 -233863780 + L1MB1 LINE L1 6119 6167 -1 9869 153 12 12 chr1 48330884 48333519 -233860145 - L1PA15 LINE L1 -32 6784 4154 1238 125 0 0 chr1 48333522 48333698 -233859966 - AluSp SINE Alu 0 313 138 7930 222 41 16 chr1 48333826 48334098 -233859566 - L1PA15 LINE L1 -2688 4109 3846 408 40 0 0 chr1 48334098 48334148 -233859516 + (TG)n Simple_repeat Simple_repeat 2 51 0 7930 222 41 16 chr1 48334148 48336673 -233856991 - L1PA15 LINE L1 -2951 3846 1235 752 304 34 8 chr1 48336700 48336966 -233856698 + L1MEd LINE L1 115 387 -5732 579 146 0 0 chr1 48337324 48337413 -233856251 + AluJ/FLAM SINE Alu 12 100 -212 892 155 19 13 chr1 48337414 48337569 -233856095 + AluJo/FRAM SINE Alu 157 312 0 437 275 100 9 chr1 48337578 48337807 -233855857 + L1MEd LINE L1 2194 2443 -3686 821 268 14 38 chr1 48337807 48338016 -233855648 + MLT1I LTR MaLR 134 337 -72 2539 84 0 0 chr1 48338016 48338324 -233855340 + AluY SINE Alu 1 308 -3 982 198 27 85 chr1 48338373 48338702 -233854962 - L1ME1 LINE L1 -54 6112 5803 665 241 6 0 chr1 48338810 48338980 -233854684 - L1ME1 LINE L1 -332 5834 5664 7532 169 109 26 chr1 48338980 48340521 -233853143 - MER52A LTR ERV1 0 1755 1 610 164 29 22 chr1 48340521 48340785 -233852879 - L1ME1 LINE L1 -499 5667 5285 636 194 28 14 chr1 48340828 48341110 -233852554 + L1MD2 LINE L1 6015 6349 -10 869 296 60 21 chr1 48341169 48341403 -233852261 + L1ME LINE L1 4944 5167 -1003 2333 115 0 0 chr1 48341403 48341715 -233851949 + AluSx SINE Alu 1 312 0 869 296 60 21 chr1 48341715 48342226 -233851438 + L1ME LINE L1 5167 5719 -451 214 149 43 0 chr1 48342327 48342374 -233851290 + (CCCCG)n Simple_repeat Simple_repeat 1 49 0 24 32 0 0 chr1 48342591 48342622 -233851042 + GC_rich Low_complexity Low_complexity 1 31 0 187 109 0 43 chr1 48342700 48342746 -233850918 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 197 264 0 69 chr1 48342870 48342957 -233850707 + MIR SINE MIR 112 192 -70 649 213 41 35 chr1 48343122 48343319 -233850345 - MIR SINE MIR -1 261 64 331 265 0 12 chr1 48343463 48343546 -233850118 + L1MB2 LINE L1 5526 5607 -514 * 981 185 31 9 chr1 48343528 48343738 -233849926 + L1MB2 LINE L1 5855 6076 -95 1759 147 33 39 chr1 48343740 48344047 -233849617 - AluJo SINE Alu -7 305 1 333 0 0 0 chr1 48344447 48344484 -233849180 + (TG)n Simple_repeat Simple_repeat 1 37 0 305 273 71 7 chr1 48344781 48344935 -233848729 - HAL1 LINE L1 -337 2170 2007 349 183 17 0 chr1 48344963 48345023 -233848641 - FLAM_A SINE Alu -61 72 12 1724 234 82 30 chr1 48345043 48345662 -233848002 - HAL1 LINE L1 -585 1922 1170 850 137 0 43 chr1 48345662 48345801 -233847863 - FLAM_C SINE Alu 0 133 1 1724 234 82 30 chr1 48345801 48346131 -233847533 - HAL1 LINE L1 -1337 1170 859 338 239 0 0 chr1 48346150 48346221 -233847443 - MIR SINE MIR -33 229 159 318 278 66 84 chr1 48346360 48346587 -233847077 - HAL1 LINE L1 -2284 223 1 251 200 347 0 chr1 48346829 48346904 -233846760 + L1ME3 LINE L1 5548 5648 -514 4939 169 74 37 chr1 48346905 48347006 -233846658 - Charlie1a DNA MER1_type -1328 1433 1337 2042 137 6 16 chr1 48347006 48347320 -233846344 + AluJo SINE Alu 1 311 -1 4939 169 74 37 chr1 48347320 48347465 -233846199 - Charlie1a DNA MER1_type -1424 1337 1199 2211 122 0 0 chr1 48347465 48347760 -233845904 - AluSx SINE Alu -17 295 1 2957 113 34 19 chr1 48347768 48348246 -233845418 - L1MA5A LINE L1 -5 6292 5808 4939 169 74 37 chr1 48348246 48349093 -233844571 - Charlie1a DNA MER1_type -1568 1193 289 963 172 101 0 chr1 48349080 48349278 -233844386 - Charlie1a DNA MER1_type -1237 218 1 * 2542 47 0 13 chr1 48349339 48349640 -233844024 + AluY SINE Alu 1 297 -14 444 269 62 31 chr1 48349640 48349800 -233843864 + L1ME3 LINE L1 5696 5860 -302 653 255 113 74 chr1 48349801 48350272 -233843392 - LTR16C LTR ERVL 0 491 3 235 237 0 0 chr1 48351244 48351303 -233842361 - MIR SINE MIR 0 262 204 363 257 43 100 chr1 48351575 48351785 -233841879 + L1ME4a LINE L1 5403 5600 -521 247 270 16 0 chr1 48351785 48351848 -233841816 - MIR SINE MIR -63 145 82 2362 98 0 0 chr1 48351852 48352147 -233841517 + AluSc SINE Alu 1 295 -14 284 208 52 81 chr1 48352224 48352446 -233841218 + L1ME4a LINE L1 5697 5912 -209 1111 158 24 0 chr1 48352457 48352622 -233841042 - AluJb SINE Alu -23 289 121 702 119 20 0 chr1 48352728 48352829 -233840835 - FLAM_C SINE Alu -38 105 3 741 238 42 21 chr1 48353658 48353847 -233839817 - MIR SINE MIR -50 212 20 2073 137 3 10 chr1 48353857 48354156 -233839508 - AluJb SINE Alu -15 297 1 506 280 73 14 chr1 48355018 48355236 -233838428 - MIR SINE MIR 0 262 32 445 277 50 6 chr1 48355546 48355705 -233837959 - MIR SINE MIR -66 196 31 1739 164 37 13 chr1 48356934 48357233 -233836431 - AluJo SINE Alu -4 308 3 195 114 0 0 chr1 48357332 48357367 -233836297 + (CAACC)n Simple_repeat Simple_repeat 3 37 0 1258 101 6 6 chr1 48357538 48357717 -233835947 - AluSq SINE Alu -1 312 134 2453 88 3 0 chr1 48357717 48358025 -233835639 - AluSp SINE Alu -4 309 1 857 277 96 35 chr1 48358583 48359071 -233834593 - L1ME4a LINE L1 -2 6119 5602 777 191 0 0 chr1 48359083 48359214 -233834450 - AluJb SINE Alu -180 132 2 714 140 0 19 chr1 48359246 48359353 -233834311 + AluSg/x SINE Alu 81 185 -127 235 308 15 23 chr1 48359355 48359485 -233834179 - MIR SINE MIR -54 208 80 2102 116 3 0 chr1 48359902 48360213 -233833451 - AluSq SINE Alu 0 312 1 323 252 106 73 chr1 48360833 48361051 -233832613 - L3 LINE CR1 -7 1570 1346 249 239 42 90 chr1 48361171 48361338 -233832326 - L1MEd LINE L1 -5304 815 657 439 333 0 8 chr1 48361363 48361495 -233832169 - L2 LINE L2 -1 3271 3141 1908 132 8 0 chr1 48361901 48362166 -233831498 + AluSx SINE Alu 1 267 -45 340 152 182 0 chr1 48362181 48362247 -233831417 + AluS SINE Alu 221 298 -4 258 329 82 0 chr1 48362256 48362426 -233831238 - L2 LINE L2 -620 2694 2511 463 277 24 21 chr1 48363302 48363475 -233830189 + MIR SINE MIR 20 190 -65 2259 110 7 0 chr1 48364657 48364958 -233828706 + AluSq SINE Alu 1 303 -10 719 213 13 13 chr1 48366723 48366873 -233826791 + FAM SINE Alu 1 40 -9 713 238 30 0 chr1 48366949 48367113 -233826551 - MIR SINE MIR -65 197 29 1234 233 42 60 chr1 48367178 48367581 -233826083 - MSTD LTR MaLR 0 396 1 1637 224 83 34 chr1 48369757 48370253 -233823411 - MLT2B1 LTR ERVL 0 520 1 212 98 0 49 chr1 48370600 48370641 -233823023 + (CATA)n Simple_repeat Simple_repeat 2 40 0 230 281 0 52 chr1 48370642 48370738 -233822926 - L1MC4 LINE L1 -1338 6704 6614 230 243 26 10 chr1 48370744 48370835 -233822829 - L1MCa LINE L1 -1339 6983 2004 * 252 221 158 11 chr1 48370811 48370906 -233822758 + L1MC4 LINE L1 6615 6723 -1319 243 239 0 0 chr1 48370977 48371044 -233822620 + (TA)n Simple_repeat Simple_repeat 1 67 0 23 0 0 0 chr1 48371226 48371249 -233822415 + AT_rich Low_complexity Low_complexity 1 23 0 229 274 0 0 chr1 48371420 48371482 -233822182 + MIR3 SINE MIR 141 202 -6 690 191 13 67 chr1 48373051 48373235 -233820429 + MIR SINE MIR 2 180 -28 271 200 57 71 chr1 48373275 48373345 -233820319 - L2 LINE L2 -37 3235 3167 458 249 109 70 chr1 48373916 48374173 -233819491 - L2 LINE L2 0 3313 3047 867 181 35 55 chr1 48374291 48374490 -233819174 + MER58A DNA MER1_type 30 224 0 277 347 77 10 chr1 48374663 48374859 -233818805 - MIR SINE MIR -12 250 42 285 263 29 12 chr1 48375229 48375575 -233818089 + (TG)n Simple_repeat Simple_repeat 1 352 0 343 321 126 23 chr1 48377977 48378192 -233815472 - MIR SINE MIR -6 256 20 1089 157 0 0 chr1 48378357 48378516 -233815148 - AluJb SINE Alu -17 295 137 215 280 189 21 chr1 48378989 48379132 -233814532 - MIR SINE MIR -44 218 52 266 294 250 5 chr1 48379331 48379535 -233814129 - MIR SINE MIR 0 262 9 2479 91 3 0 chr1 48379628 48379937 -233813727 - AluSp SINE Alu -3 310 1 2261 82 41 0 chr1 48380056 48380348 -233813316 - AluSx SINE Alu -8 304 1 257 284 28 18 chr1 48380442 48380551 -233813113 + CT-rich Low_complexity Low_complexity 4 113 0 2590 66 0 0 chr1 48380753 48381057 -233812607 + AluY SINE Alu 1 304 -7 195 307 18 70 chr1 48381357 48381471 -233812193 - L2 LINE L2 -565 2749 2642 1153 160 16 0 chr1 48381849 48382037 -233811627 - AluJ SINE Alu -12 300 110 2095 143 50 27 chr1 48382043 48382482 -233811182 + LTR7 LTR ERV1 1 449 -1 948 220 45 51 chr1 48382502 48382941 -233810723 + HERVH LTR ERV1 17 446 -7267 3743 239 16 54 chr1 48383054 48384768 -233808896 + HERVH LTR ERV1 802 2265 -4389 2160 155 48 20 chr1 48384778 48385216 -233808448 + LTR7 LTR ERV1 1 450 0 730 133 0 0 chr1 48385216 48385321 -233808343 - AluJ SINE Alu -206 106 2 561 308 89 65 chr1 48385465 48385848 -233807816 + L1M4c LINE L1 415 806 -5497 243 352 38 50 chr1 48385950 48386109 -233807555 + L1M4c LINE L1 650 806 -5497 255 222 0 0 chr1 48386346 48386391 -233807273 + L1M4c LINE L1 1130 1174 -5129 * 4049 223 125 11 chr1 48386380 48386984 -233806680 + L1M4c LINE L1 971 1505 -4879 180 0 0 0 chr1 48386984 48387004 -233806660 + (CA)n Simple_repeat Simple_repeat 2 21 0 4049 223 125 11 chr1 48387004 48387059 -233806605 + L1M4c LINE L1 1505 1552 -4832 1309 211 82 4 chr1 48387059 48387176 -233806488 + AluJo SINE Alu 1 107 -205 249 108 0 0 chr1 48387176 48387213 -233806451 + (CA)n Simple_repeat Simple_repeat 2 38 0 1309 211 82 4 chr1 48387213 48387374 -233806290 + AluJo SINE Alu 107 301 -11 4049 223 125 11 chr1 48387374 48388033 -233805631 + L1M4c LINE L1 1552 2441 -3943 1531 167 70 4 chr1 48388022 48388292 -233805372 + L1MCa LINE L1 9 296 -6130 * 885 230 162 0 chr1 48388529 48388751 -233804913 + L1M2b LINE L1 520 777 -6432 5119 191 183 32 chr1 48388753 48389379 -233804285 + L1M2b LINE L1 1544 2074 -5134 2618 42 7 3 chr1 48389379 48389689 -233803975 + AluY SINE Alu 1 311 0 5119 191 183 32 chr1 48389689 48389724 -233803940 + L1M2b LINE L1 2074 2102 -5106 2136 147 0 6 chr1 48389724 48390038 -233803626 + AluSx SINE Alu 1 312 0 5119 191 183 32 chr1 48390038 48391218 -233802446 + L1M2b LINE L1 2102 3673 -3535 981 116 0 0 chr1 48391459 48391597 -233802067 - MLT2A1 LTR ERVL -81 363 226 26475 69 7 0 chr1 48391597 48394825 -233798839 + HERVL LTR ERVL 2104 5353 -301 338 269 154 10 chr1 48395005 48395109 -233798555 - L1ME3A LINE L1 -293 5877 5759 1865 107 0 4 chr1 48395160 48395413 -233798251 - AluSg SINE Alu -7 303 52 277 313 117 23 chr1 48395416 48395716 -233797948 + L1M2b LINE L1 4588 4915 -2293 479 176 0 0 chr1 48395919 48396004 -233797660 - AluS SINE Alu -5 304 220 2113 104 0 7 chr1 48395939 48396228 -233797436 - AluSx SINE Alu -25 287 1 1601 248 26 7 chr1 48396456 48396875 -233796789 + L1MC4 LINE L1 7157 7583 -459 224 278 19 0 chr1 48396875 48396929 -233796735 + (TG)n Simple_repeat Simple_repeat 2 56 0 743 197 0 30 chr1 48396981 48397113 -233796551 + FLAM_C SINE Alu 6 133 -10 795 257 73 19 chr1 48397116 48397505 -233796159 + L1MC4 LINE L1 7608 8022 -20 2084 119 3 3 chr1 48397505 48397815 -233795849 - AluSx SINE Alu -2 310 1 795 257 73 19 chr1 48397815 48397838 -233795826 + L1MC4 LINE L1 8022 8042 0 339 295 96 75 chr1 48400657 48401045 -233792619 + L1M2b LINE L1 4906 5301 -1907 1825 139 0 23 chr1 48401064 48401367 -233792297 - AluJb SINE Alu -16 296 1 309 161 25 205 chr1 48401367 48401528 -233792136 - MIR SINE MIR 0 262 131 375 284 254 0 chr1 48404337 48404471 -233789193 - MIR SINE MIR -94 168 1 617 191 22 44 chr1 48404580 48404716 -233788948 + MER5B DNA MER1_type 1 133 -45 1922 128 35 0 chr1 48404744 48405033 -233788631 + AluSx SINE Alu 1 299 -13 37 23 0 0 chr1 48405832 48405876 -233787788 + AT_rich Low_complexity Low_complexity 1 44 0 15542 192 32 5 chr1 48405876 48406055 -233787609 - L1PB1 LINE L1 -8 6859 6686 2338 82 0 0 chr1 48406055 48406359 -233787305 - AluY SINE Alu -7 304 1 15542 192 32 5 chr1 48406359 48412695 -233780969 - L1PB1 LINE L1 -181 6686 15 26 0 0 0 chr1 48413018 48413044 -233780620 + AT_rich Low_complexity Low_complexity 1 26 0 254 263 0 0 chr1 48413124 48413181 -233780483 - MIR SINE MIR -103 159 103 767 290 89 25 chr1 48413369 48413759 -233779905 - MLT1K LTR MaLR -53 535 63 1004 158 6 0 chr1 48414213 48414378 -233779286 + AluJb SINE Alu 136 301 -11 27 73 0 0 chr1 48416365 48416420 -233777244 + AT_rich Low_complexity Low_complexity 1 55 0 2249 230 23 52 chr1 48416866 48417171 -233776493 - MLT2B3 LTR ERVL -55 499 214 2007 136 3 0 chr1 48417171 48417479 -233776185 - AluSg SINE Alu -1 309 1 2249 230 23 52 chr1 48417479 48417687 -233775977 - MLT2B3 LTR ERVL -340 214 1 15558 133 20 22 chr1 48417687 48420129 -233773535 - ERVL-B3-B3 LTR ERVL -7 5757 3321 1804 141 82 3 chr1 48420136 48420440 -233773224 + MER7A DNA MER2_type 21 346 0 16723 169 60 43 chr1 48420440 48422275 -233771389 - ERVL-B3-B3 LTR ERVL -2442 3322 1406 1775 131 0 28 chr1 48422275 48422558 -233771106 - AluSx SINE Alu -14 298 24 16723 169 60 43 chr1 48422558 48423988 -233769676 - ERVL-B3-B3 LTR ERVL -4358 1406 2 2378 233 14 37 chr1 48423989 48424556 -233769108 - MLT2B3 LTR ERVL 0 554 1 573 228 14 41 chr1 48424724 48424869 -233768795 + Charlie2 DNA MER1_type 7 147 -2715 580 285 99 65 chr1 48424870 48425224 -233768440 + L1M4 LINE L1 241 606 -5525 254 239 23 0 chr1 48425241 48425329 -233768335 + L1MC4 LINE L1 6614 6703 -1339 246 128 0 0 chr1 48425331 48425370 -233768294 + (TA)n Simple_repeat Simple_repeat 1 39 0 304 196 0 0 chr1 48425371 48425422 -233768242 - L1MC4 LINE L1 -1339 6703 6653 1511 238 47 32 chr1 48425612 48425958 -233767706 + L1M4 LINE L1 915 1076 -5065 884 143 0 0 chr1 48425958 48426091 -233767573 + FLAM_C SINE Alu 1 133 0 1511 238 47 32 chr1 48426091 48426556 -233767108 + L1M4 LINE L1 1076 1533 -4608 * 2455 195 71 52 chr1 48426554 48426880 -233766784 + L1MCa LINE L1 24 368 -6058 1793 155 3 7 chr1 48426880 48427176 -233766488 + AluJo SINE Alu 1 295 -17 2455 195 71 52 chr1 48427176 48427458 -233766206 + L1MCa LINE L1 368 643 -5783 967 221 0 15 chr1 48427486 48427685 -233765979 + L1MCa LINE L1 573 768 -5658 878 188 53 39 chr1 48427688 48427895 -233765769 - AluJo SINE Alu -16 296 87 789 176 11 43 chr1 48427895 48428082 -233765582 + L1MCa LINE L1 757 937 -5489 4684 150 150 46 chr1 48428085 48429516 -233764148 - pTR5 LTR ERV1 0 2438 744 3363 135 44 18 chr1 48429516 48430198 -233763466 + L1MCa LINE L1 933 1632 -4794 4161 190 25 112 chr1 48430206 48430973 -233762691 + L1M4 LINE L1 3170 4002 -2208 2112 117 3 0 chr1 48430973 48431281 -233762383 + AluSx SINE Alu 1 309 -3 4161 190 25 112 chr1 48431281 48431353 -233762311 + L1M4 LINE L1 4002 4079 -2131 2299 92 0 0 chr1 48431353 48431659 -233762005 + AluY SINE Alu 1 306 -5 4161 190 25 112 chr1 48431659 48431758 -233761906 + L1M4 LINE L1 4079 4185 -2025 2250 103 7 0 chr1 48431758 48432068 -233761596 + AluSx SINE Alu 1 312 0 4161 190 25 112 chr1 48432068 48432594 -233761070 + L1M4 LINE L1 4185 4509 -1701 651 212 38 55 chr1 48432612 48432693 -233760971 + Charlie2 DNA MER1_type 2630 2711 -151 1872 136 3 13 chr1 48432693 48433002 -233760662 + AluSx SINE Alu 1 306 -6 651 212 38 55 chr1 48433002 48433107 -233760557 + Charlie2 DNA MER1_type 2711 2814 -48 1954 147 0 13 chr1 48433107 48433413 -233760251 - AluJb SINE Alu -10 302 1 651 212 38 55 chr1 48433413 48433461 -233760203 + Charlie2 DNA MER1_type 2814 2861 -1 245 130 0 0 chr1 48433947 48433993 -233759671 + Alu SINE Alu 258 303 0 2145 96 0 26 chr1 48434014 48434326 -233759338 + AluSg1 SINE Alu 1 304 -5 373 294 35 19 chr1 48434428 48434571 -233759093 - MIR SINE MIR -71 137 20 386 301 125 28 chr1 48435224 48435583 -233758081 - L2 LINE L2 -356 2958 2565 219 69 0 0 chr1 48435875 48435904 -233757760 + (CCCCCG)n Simple_repeat Simple_repeat 2 30 0 321 47 0 0 chr1 48436860 48436903 -233756761 + (CACCC)n Simple_repeat Simple_repeat 4 46 0 295 282 100 36 chr1 48437384 48437494 -233756170 - L2 LINE L2 -16 3297 3181 241 293 47 57 chr1 48439203 48439309 -233754355 + MIR SINE MIR 17 121 -87 184 94 0 62 chr1 48439943 48439975 -233753689 + MIR SINE MIR 115 144 -64 317 254 206 12 chr1 48440392 48440557 -233753107 + MIR SINE MIR 7 203 -59 351 195 52 0 chr1 48442165 48442242 -233751422 + MIR SINE MIR 111 191 -71 354 292 58 17 chr1 48443294 48443414 -233750250 + MIR3 SINE MIR 61 185 -23 1903 136 10 16 chr1 48443533 48443842 -233749822 + AluSx SINE Alu 1 307 -5 425 371 29 6 chr1 48444951 48445126 -233748538 + MIR SINE MIR 13 191 -71 274 297 94 16 chr1 48447703 48447831 -233745833 + L3 LINE CR1 1328 1465 -112 649 222 102 12 chr1 48447850 48448017 -233745647 - MER58C DNA MER1_type -8 207 26 180 0 0 0 chr1 48448635 48448655 -233745009 + (CAGGC)n Simple_repeat Simple_repeat 2 21 0 878 182 130 5 chr1 48448892 48449084 -233744580 + MER20 DNA MER1_type 4 219 0 801 312 30 4 chr1 48449509 48449746 -233743918 + MIR SINE MIR 10 252 -10 285 299 79 30 chr1 48449857 48450021 -233743643 + MIR3 SINE MIR 30 201 -7 253 270 95 42 chr1 48450279 48450437 -233743227 + MIR SINE MIR 12 182 -58 331 270 9 70 chr1 48450976 48451091 -233742573 + L2 LINE L2 3201 3308 -5 2077 130 0 16 chr1 48451656 48451963 -233741701 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 48452104 48452125 -233741539 + AT_rich Low_complexity Low_complexity 1 21 0 392 191 21 43 chr1 48452382 48452476 -233741188 - L2 LINE L2 -27 3286 3195 819 113 14 57 chr1 48452593 48452734 -233740930 - AluJo SINE Alu -176 136 2 198 301 77 56 chr1 48453298 48453441 -233740223 + L2 LINE L2 2794 2939 -375 526 188 59 0 chr1 48453569 48453670 -233739994 + MER5B DNA MER1_type 1 107 -71 363 283 41 60 chr1 48454168 48454334 -233739330 + MIR3 SINE MIR 3 168 -65 209 254 45 30 chr1 48454420 48454487 -233739177 + MIR3 SINE MIR 125 192 -16 332 309 42 37 chr1 48454663 48454854 -233738810 + MIR SINE MIR 15 206 -56 182 312 26 97 chr1 48455716 48455870 -233737794 + MIR SINE MIR 1 143 -119 227 238 135 40 chr1 48455905 48456031 -233737633 - MIR3 SINE MIR -47 161 24 621 183 0 0 chr1 48457279 48457383 -233736281 + FRAM SINE Alu 67 170 -6 316 252 203 70 chr1 48457383 48457484 -233736180 + L1MC4a LINE L1 5891 5977 -1831 1651 117 139 0 chr1 48457484 48457757 -233735907 + AluSx SINE Alu 1 311 -1 316 252 203 70 chr1 48457757 48457897 -233735767 + L1MC4a LINE L1 5977 6164 -1644 394 304 55 45 chr1 48458494 48458714 -233734950 - L2 LINE L2 -176 3096 2875 290 215 46 0 chr1 48458913 48458978 -233734686 + MIR SINE MIR 111 178 -84 843 233 80 50 chr1 48459453 48459715 -233733949 + AluSx SINE Alu 25 294 -18 202 262 0 0 chr1 48459981 48460023 -233733641 + MIR SINE MIR 31 72 -190 1790 146 7 32 chr1 48460636 48460773 -233732891 + AluSx SINE Alu 1 140 -172 2370 61 3 13 chr1 48460773 48461083 -233732581 + AluY SINE Alu 1 307 -4 1790 146 7 32 chr1 48461083 48461254 -233732410 + AluSx SINE Alu 140 301 -11 185 326 98 23 chr1 48461315 48461447 -233732217 - MIR3 SINE MIR -65 143 2 1146 210 49 19 chr1 48462074 48462341 -233731323 + MER58B DNA MER1_type 67 341 0 225 241 83 90 chr1 48462619 48462680 -233730984 + MIR3 SINE MIR 40 100 -108 2353 58 0 7 chr1 48462680 48462973 -233730691 + AluSq SINE Alu 1 291 -22 225 241 83 90 chr1 48462973 48463044 -233730620 + MIR3 SINE MIR 100 171 -37 297 280 112 14 chr1 48463063 48463206 -233730458 - L2 LINE L2 -37 3276 3120 383 285 93 93 chr1 48463228 48463442 -233730222 + L1MC4a LINE L1 5772 5985 -1823 2245 79 0 20 chr1 48466225 48466530 -233727134 + AluSp SINE Alu 1 299 -14 324 228 65 0 chr1 48466571 48466663 -233727001 + MIR3 SINE MIR 89 186 -22 1833 143 44 3 chr1 48467315 48467608 -233726056 + AluSx SINE Alu 1 305 -7 2183 63 0 106 chr1 48468254 48468602 -233725062 + AluSp SINE Alu 1 311 -2 371 208 13 0 chr1 48468840 48468917 -233724747 + MIR SINE MIR 46 123 -139 212 204 45 0 chr1 48469109 48469153 -233724511 - MIR SINE MIR -67 141 96 184 222 0 22 chr1 48469617 48469662 -233724002 + L2 LINE L2 3261 3304 -9 34 24 0 0 chr1 48470167 48470208 -233723456 + GC_rich Low_complexity Low_complexity 1 41 0 208 282 14 0 chr1 48470478 48470549 -233723115 - SUBTEL_sa Satellite Satellite -90 84 13 21 0 0 0 chr1 48471008 48471029 -233722635 + GC_rich Low_complexity Low_complexity 1 21 0 249 295 0 13 chr1 48471091 48471169 -233722495 + MIR SINE MIR 77 153 -55 423 267 50 0 chr1 48471252 48471372 -233722292 + MIR SINE MIR 132 257 -5 189 309 74 0 chr1 48471476 48471557 -233722107 + L2 LINE L2 2974 3060 -212 2223 87 3 10 chr1 48471724 48472035 -233721629 - AluSg1 SINE Alu 0 309 1 553 157 0 0 chr1 48472201 48472284 -233721380 - FLAM_A SINE Alu -54 88 6 317 250 42 42 chr1 48473569 48473689 -233719975 - L2 LINE L2 -221 3051 2932 309 279 40 44 chr1 48473764 48473927 -233719737 + MIR SINE MIR 45 214 -48 213 39 0 0 chr1 48474810 48474836 -233718828 + (TGG)n Simple_repeat Simple_repeat 2 27 0 530 296 101 8 chr1 48475287 48475534 -233718130 + L2 LINE L2 2258 2527 -787 511 218 163 14 chr1 48475694 48475841 -233717823 + L1ME3A LINE L1 5836 6004 -166 980 150 22 114 chr1 48475879 48476152 -233717512 + MER96B DNA MER1_type? 170 417 0 503 183 30 30 chr1 48476153 48476284 -233717380 + L1ME3A LINE L1 6038 6168 -2 189 0 0 0 chr1 48476284 48476305 -233717359 + (T)n Simple_repeat Simple_repeat 1 21 0 284 281 31 0 chr1 48476329 48476425 -233717239 + L2 LINE L2 3174 3272 0 472 264 43 14 chr1 48476433 48476475 -233717189 - MIR SINE MIR -66 196 157 2244 101 7 0 chr1 48476475 48476782 -233716882 - AluSc SINE Alu 0 309 1 472 264 43 14 chr1 48476782 48476879 -233716785 - MIR SINE MIR -105 157 53 861 171 0 0 chr1 48476890 48477019 -233716645 + FLAM_A SINE Alu 1 129 -4 2100 116 0 28 chr1 48477021 48477339 -233716325 + AluSg SINE Alu 1 309 -1 214 283 164 40 chr1 48477491 48477643 -233716021 + L2 LINE L2 3102 3272 0 552 291 91 0 chr1 48477710 48477885 -233715779 + MIR SINE MIR 72 262 0 272 258 133 25 chr1 48478040 48478160 -233715504 + MIR SINE MIR 22 154 -108 2243 86 0 10 chr1 48478161 48478463 -233715201 - AluSq SINE Alu -14 299 1 937 143 0 0 chr1 48478763 48478896 -233714768 - FLAM_A SINE Alu 0 133 1 360 263 28 61 chr1 48478913 48479112 -233714552 - MIR SINE MIR -42 220 33 379 268 89 30 chr1 48479421 48479589 -233714075 + MIR3 SINE MIR 10 187 -21 442 269 97 57 chr1 48479624 48479851 -233713813 - MIR SINE MIR -1 261 26 2366 68 0 0 chr1 48479867 48480160 -233713504 + AluSg SINE Alu 1 293 -17 822 178 127 5 chr1 48480202 48480416 -233713248 - L1MB7 LINE L1 -20 6164 5921 213 274 147 32 chr1 48480491 48480586 -233713078 + MIR SINE MIR 40 145 -117 196 118 29 0 chr1 48480833 48480867 -233712797 - L2 LINE L2 -88 3225 3191 2106 91 0 4 chr1 48481129 48481405 -233712259 - AluSq SINE Alu -17 296 22 1548 199 0 16 chr1 48481439 48481750 -233711914 + AluJo SINE Alu 5 310 -2 2039 113 0 0 chr1 48481752 48482057 -233711607 + AluSx SINE Alu 1 305 0 32 26 0 0 chr1 48482057 48482096 -233711568 + AT_rich Low_complexity Low_complexity 1 39 0 2243 83 3 0 chr1 48482550 48482838 -233710826 + AluSp SINE Alu 1 289 -24 192 238 0 0 chr1 48482908 48482950 -233710714 - L2 LINE L2 0 3313 3272 2158 127 0 9 chr1 48483156 48483291 -233710373 + AluSx SINE Alu 1 136 -176 2014 117 0 7 chr1 48483291 48483591 -233710073 + AluSc SINE Alu 1 298 -11 2158 127 0 9 chr1 48483591 48483770 -233709894 + AluSx SINE Alu 136 312 0 408 214 171 36 chr1 48483783 48483923 -233709741 - MLT1H1 LTR MaLR -28 527 369 362 253 0 0 chr1 48483957 48484032 -233709632 - MLT1H1 LTR MaLR -296 299 225 1488 168 3 56 chr1 48484155 48484458 -233709206 - AluJo SINE Alu -13 299 13 805 150 0 8 chr1 48484477 48484604 -233709060 - FLAM_C SINE Alu -7 126 1 2165 104 3 0 chr1 48484614 48484912 -233708752 - AluSp SINE Alu -14 299 1 503 328 141 12 chr1 48484937 48485257 -233708407 - L1MB7 LINE L1 -2023 5785 5425 332 340 73 11 chr1 48485795 48485956 -233707708 + MIR SINE MIR 34 201 -7 * 473 239 36 14 chr1 48485949 48486087 -233707577 - MIR SINE MIR -76 186 46 1635 180 3 23 chr1 48486193 48486493 -233707171 + AluJb SINE Alu 1 294 -18 297 320 41 16 chr1 48487366 48487488 -233706176 + MIR SINE MIR 19 143 -119 658 223 37 43 chr1 48487506 48487694 -233705970 + MIR SINE MIR 33 219 -43 285 51 0 0 chr1 48487722 48487761 -233705903 + (CAT)n Simple_repeat Simple_repeat 2 40 0 3041 136 42 41 chr1 48487939 48488151 -233705513 - LTR49 LTR ERV1 0 595 385 1990 104 43 3 chr1 48488151 48488450 -233705214 + AluSq SINE Alu 3 313 0 3041 136 42 41 chr1 48488450 48488825 -233704839 - LTR49 LTR ERV1 -210 385 7 2244 95 0 3 chr1 48489067 48489373 -233704291 - AluSg SINE Alu -5 305 1 315 314 21 80 chr1 48489379 48489502 -233704162 - MER5B DNA MER1_type -1 177 67 3069 88 21 12 chr1 48489502 48489934 -233703730 - L1PA11 LINE L1 -3 6171 5736 315 314 21 80 chr1 48489934 48489998 -233703666 - MER5B DNA MER1_type -111 67 1 192 298 138 21 chr1 48490250 48490344 -233703320 - L2 LINE L2 -1 3312 3208 311 293 155 41 chr1 48491231 48491453 -233702211 - L2 LINE L2 -343 2971 2776 2175 61 54 3 chr1 48491453 48491747 -233701917 - AluSg SINE Alu -1 309 1 311 293 155 41 chr1 48491747 48491886 -233701778 - L2 LINE L2 -538 2776 2569 698 262 97 59 chr1 48492544 48493070 -233700594 + LTR48 LTR ERV1 1 542 0 233 371 29 40 chr1 48493149 48493324 -233700340 - L2 LINE L2 -2 3270 3098 663 247 121 29 chr1 48493455 48493694 -233699970 + MIR SINE MIR 2 262 0 23 0 0 0 chr1 48493793 48493816 -233699848 + AT_rich Low_complexity Low_complexity 1 23 0 403 297 78 0 chr1 48493906 48494034 -233699630 - MER91C DNA MER1_type 0 140 3 357 116 0 14 chr1 48494170 48494239 -233699425 + L1PA4 LINE L1 6084 6151 -4 29 0 0 0 chr1 48494240 48494269 -233699395 + AT_rich Low_complexity Low_complexity 1 29 0 446 248 8 26 chr1 48494717 48494834 -233698830 - L3 LINE CR1 -3 1574 1460 1982 118 3 23 chr1 48494915 48495219 -233698445 - AluSp SINE Alu -15 298 1 730 164 20 20 chr1 48495656 48495802 -233697862 - LTR48B LTR ERV1 0 644 499 2109 254 12 4 chr1 48495810 48496373 -233697291 - L1MCa LINE L1 -3332 3094 2527 27 0 0 0 chr1 48496373 48496400 -233697264 + AT_rich Low_complexity Low_complexity 1 27 0 269 303 20 20 chr1 48496617 48496716 -233696948 - MIR SINE MIR -59 149 51 427 248 153 13 chr1 48496882 48497039 -233696625 + MIR SINE MIR 1 179 -83 2361 106 0 0 chr1 48497698 48498001 -233695663 - AluSx SINE Alu -9 303 1 985 157 52 34 chr1 48498381 48498409 -233695255 - L1MCa LINE L1 -3948 2478 2452 2318 72 0 0 chr1 48498409 48498728 -233694936 + AluSc SINE Alu 1 319 0 2453 92 0 0 chr1 48498732 48499036 -233694628 + AluSx SINE Alu 1 304 -8 985 157 52 34 chr1 48499036 48499293 -233694371 - L1MCa LINE L1 -3976 2450 2261 1494 74 0 74 chr1 48499311 48499527 -233694137 - AluSg/x SINE Alu -5 307 108 191 235 162 0 chr1 48499588 48499656 -233694008 - MIR SINE MIR -90 118 40 276 177 48 73 chr1 48500075 48500199 -233693465 - MER58 DNA MER1_type -140 201 81 1346 145 83 0 chr1 48500360 48500773 -233692891 - L1MCa LINE L1 -4191 2235 1735 2173 48 107 0 chr1 48500777 48501047 -233692617 + AluSp SINE Alu 1 299 -14 387 250 57 86 chr1 48501050 48501093 -233692571 - L1M4 LINE L1 -2253 3893 3850 2334 115 0 0 chr1 48501093 48501397 -233692267 - AluSx SINE Alu -8 304 1 387 250 57 86 chr1 48501397 48501493 -233692171 - L1M4 LINE L1 -2296 3850 3758 2078 122 3 10 chr1 48501499 48501794 -233691870 - AluSx SINE Alu -19 293 1 734 197 0 8 chr1 48501797 48501924 -233691740 - FLAM_A SINE Alu -6 127 2 3312 148 25 116 chr1 48501925 48502295 -233691369 - L1MCa LINE L1 -4764 1662 1260 237 33 0 0 chr1 48502295 48502325 -233691339 + (GA)n Simple_repeat Simple_repeat 1 30 0 3312 148 25 116 chr1 48502325 48502381 -233691283 - L1MCa LINE L1 -5166 1260 1200 2178 95 0 30 chr1 48502381 48502685 -233690979 + AluSx SINE Alu 2 296 -16 3312 148 25 116 chr1 48502685 48503220 -233690444 - L1MCa LINE L1 -5226 1200 788 2063 200 57 90 chr1 48503220 48503504 -233690160 + LTR48B LTR ERV1 1 293 -351 1593 82 19 5 chr1 48503504 48503712 -233689952 - AluSc SINE Alu -17 292 82 2063 200 57 90 chr1 48503712 48503880 -233689784 + LTR48B LTR ERV1 293 465 -179 840 93 0 0 chr1 48503880 48503987 -233689677 + U6 snRNA snRNA 1 107 0 2063 200 57 90 chr1 48503987 48504135 -233689529 + LTR48B LTR ERV1 465 580 -64 2302 114 0 0 chr1 48504135 48504433 -233689231 - AluSq SINE Alu -15 298 1 2063 200 57 90 chr1 48504433 48504496 -233689168 + LTR48B LTR ERV1 580 644 0 3721 168 60 12 chr1 48504496 48505234 -233688430 - L1MCa LINE L1 -5635 791 19 605 281 78 37 chr1 48505235 48505411 -233688253 - MIR SINE MIR -7 255 65 2485 73 7 0 chr1 48505411 48505713 -233687951 + AluY SINE Alu 1 304 -7 605 281 78 37 chr1 48505713 48505778 -233687886 - MIR SINE MIR -197 65 4 199 269 8 37 chr1 48505943 48506079 -233687585 + MIR SINE MIR 54 262 0 464 309 133 62 chr1 48506498 48506867 -233686797 + L1MEc LINE L1 35 429 -5967 2505 45 7 0 chr1 48506879 48507167 -233686497 - AluSp SINE Alu -23 290 1 212 307 71 81 chr1 48507344 48507640 -233686024 - L2 LINE L2 -160 3112 2820 288 295 32 11 chr1 48507701 48507796 -233685868 - MER5A DNA MER1_type -27 162 66 996 173 6 22 chr1 48507799 48507978 -233685686 - AluJb SINE Alu -5 307 132 2073 138 23 0 chr1 48507978 48508283 -233685381 - AluSx SINE Alu 0 312 1 298 0 0 45 chr1 48508290 48508334 -233685330 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2141 114 0 26 chr1 48508385 48508692 -233684972 + AluSx SINE Alu 1 299 -13 181 311 0 0 chr1 48508693 48508738 -233684926 + MER5A DNA MER1_type 145 189 0 989 227 58 0 chr1 48508923 48509165 -233684499 + L1ME1 LINE L1 5579 5834 -332 655 185 40 7 chr1 48509166 48509317 -233684347 + L1MA10 LINE L1 6177 6332 -2 525 278 12 43 chr1 48509366 48509528 -233684136 - MIR SINE MIR -17 245 89 415 145 0 0 chr1 48509705 48509767 -233683897 - Alu SINE Alu -15 296 235 2291 70 0 4 chr1 48509767 48510037 -233683627 - AluSg SINE Alu -41 269 1 1801 138 3 89 chr1 48510064 48510391 -233683273 - AluJo SINE Alu -13 299 1 2277 103 6 13 chr1 48510485 48510797 -233682867 - AluSp SINE Alu -3 310 1 2039 113 44 20 chr1 48511210 48511503 -233682161 - AluSg SINE Alu -10 300 1 180 0 0 0 chr1 48511672 48511692 -233681972 + (GA)n Simple_repeat Simple_repeat 1 20 0 197 236 73 0 chr1 48511774 48511829 -233681835 - L2 LINE L2 0 3313 3255 2268 95 10 7 chr1 48512230 48512525 -233681139 - AluSx SINE Alu -16 296 1 273 170 0 0 chr1 48512530 48512577 -233681087 - L1M4 LINE L1 -960 5186 5140 504 224 0 0 chr1 48512688 48512786 -233680878 - MER20 DNA MER1_type 0 219 122 1077 147 319 11 chr1 48512788 48513061 -233680603 + MLT1F1 LTR MaLR 211 567 0 501 211 26 67 chr1 48513061 48513111 -233680553 - L1M4 LINE L1 -1695 4451 4400 2353 96 3 0 chr1 48513111 48513413 -233680251 - AluSp SINE Alu -10 303 1 501 211 26 67 chr1 48513413 48513556 -233680108 - L1M4 LINE L1 -1746 4400 4266 2008 163 54 11 chr1 48514068 48514418 -233679246 - MLT1A1 LTR MaLR 0 365 1 450 280 95 30 chr1 48514779 48514947 -233678717 - MIR3 SINE MIR -20 188 10 1187 268 101 14 chr1 48515223 48515648 -233678016 - MLT1D LTR MaLR 0 505 44 1978 143 3 38 chr1 48515660 48515975 -233677689 - AluJo SINE Alu -4 308 5 480 275 37 63 chr1 48516183 48516372 -233677292 - MIR SINE MIR -56 206 23 390 275 42 42 chr1 48516660 48516690 -233676974 + MIR3 SINE MIR 33 62 -146 2200 121 26 42 chr1 48516690 48516758 -233676906 - THE1C LTR MaLR -1 374 306 2320 108 0 0 chr1 48516758 48517063 -233676601 + AluSg SINE Alu 1 305 -5 2200 121 26 42 chr1 48517063 48517374 -233676290 - THE1C LTR MaLR -69 306 1 390 275 42 42 chr1 48517374 48517510 -233676154 + MIR3 SINE MIR 61 199 -9 317 321 18 18 chr1 48517814 48517926 -233675738 - MIR SINE MIR -88 174 63 2569 58 0 3 chr1 48519241 48519549 -233674115 - AluY SINE Alu -4 307 1 202 114 0 29 chr1 48520107 48520142 -233673522 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 181 271 51 34 chr1 48520861 48520920 -233672744 - MIR SINE MIR -44 218 159 828 267 140 8 chr1 48521553 48522025 -233671639 + L1ME4a LINE L1 5414 5947 -174 378 205 109 96 chr1 48522155 48522292 -233671372 + L1ME4a LINE L1 5934 6075 -46 2215 104 20 0 chr1 48522292 48522590 -233671074 - AluSq SINE Alu -9 304 1 378 205 109 96 chr1 48522590 48522608 -233671056 + L1ME4a LINE L1 6075 6091 -30 1700 194 39 65 chr1 48522709 48523005 -233670659 - MLT1C LTR MaLR -2 465 184 2378 88 3 16 chr1 48523005 48523322 -233670342 - AluSq SINE Alu 0 313 1 1700 194 39 65 chr1 48523322 48523483 -233670181 - MLT1C LTR MaLR -283 184 20 306 239 216 30 chr1 48523734 48523868 -233669796 + MIR SINE MIR 20 178 -84 2441 173 127 11 chr1 48524227 48524782 -233668882 + MER39 LTR ERV1 1 667 -40 2382 100 3 0 chr1 48524782 48525082 -233668582 + AluSx SINE Alu 6 306 -6 2441 173 127 11 chr1 48525082 48525117 -233668547 + MER39 LTR ERV1 667 697 -10 343 349 64 32 chr1 48525121 48525370 -233668294 + L1ME LINE L1 5527 5783 -338 259 283 183 50 chr1 48525391 48525610 -233668054 - L2 LINE L2 -9 3263 3016 701 315 169 22 chr1 48525662 48526490 -233667174 - L2 LINE L2 -401 2913 1964 5039 83 20 25 chr1 48526497 48527014 -233666650 + L1PB2 LINE L1 5420 5935 -216 2151 138 0 0 chr1 48527014 48527310 -233666354 + AluSg SINE Alu 1 296 -14 5039 83 20 25 chr1 48527310 48527525 -233666139 + L1PB2 LINE L1 5935 6149 -2 1563 143 4 42 chr1 48528228 48528487 -233665177 + AluJb SINE Alu 11 259 -53 2259 107 0 0 chr1 48528499 48528789 -233664875 + AluSg SINE Alu 1 290 -20 236 225 81 54 chr1 48528797 48528908 -233664756 + L2 LINE L2 1779 1892 -1422 1158 208 64 111 chr1 48528918 48529036 -233664628 + MLT1C LTR MaLR 6 128 -339 2242 99 3 0 chr1 48529036 48529350 -233664314 + AluSp SINE Alu 1 315 0 1158 208 64 111 chr1 48529350 48529639 -233664025 + MLT1C LTR MaLR 128 390 -77 2451 93 0 0 chr1 48529639 48529949 -233663715 + AluSg SINE Alu 1 310 0 1158 208 64 111 chr1 48529949 48530024 -233663640 + MLT1C LTR MaLR 390 467 0 310 232 0 0 chr1 48530032 48530088 -233663576 - MIR SINE MIR 0 262 207 269 286 67 52 chr1 48530257 48530376 -233663288 - MIR SINE MIR -67 141 35 828 288 105 39 chr1 48531054 48531436 -233662228 - LTR16C LTR ERVL 0 491 85 2356 108 0 0 chr1 48532024 48532329 -233661335 - AluSx SINE Alu -2 310 6 230 258 194 0 chr1 48532429 48532553 -233661111 + L2 LINE L2 3166 3313 0 289 291 0 0 chr1 48532557 48532636 -233661028 - MIR SINE MIR -1 261 183 2348 119 0 0 chr1 48532658 48532970 -233660694 + AluSx SINE Alu 1 312 0 621 290 27 16 chr1 48532974 48533384 -233660280 - MLT1K LTR MaLR -18 570 111 403 239 85 39 chr1 48533452 48533582 -233660082 - MIR SINE MIR -107 155 20 535 223 8 8 chr1 48533667 48533788 -233659876 + MER5C DNA MER1_type 1 121 -203 314 321 65 30 chr1 48534619 48534787 -233658877 + MIR SINE MIR 39 212 -50 428 310 121 6 chr1 48534873 48535047 -233658617 + MIR SINE MIR 63 256 -6 * 712 297 84 62 chr1 48535042 48535748 -233657916 - L2 LINE L2 -2 3270 2545 265 359 11 0 chr1 48535825 48535917 -233657747 - L2 LINE L2 -919 2395 2303 512 135 202 0 chr1 48535981 48536070 -233657594 - U6 snRNA snRNA 0 107 1 351 306 111 81 chr1 48536072 48536134 -233657530 - L2 LINE L2 -1412 1902 1843 708 218 13 0 chr1 48536134 48536290 -233657374 + L1MA10 LINE L1 6177 6334 0 351 306 111 81 chr1 48536290 48536431 -233657233 - L2 LINE L2 -1471 1843 1708 2311 111 0 0 chr1 48536431 48536728 -233656936 + AluSx SINE Alu 1 297 -15 351 306 111 81 chr1 48536728 48537616 -233656048 - L2 LINE L2 -1606 1708 777 1593 173 65 0 chr1 48537754 48538031 -233655633 - AluJo SINE Alu -17 295 1 201 317 0 17 chr1 48538040 48538100 -233655564 + L2 LINE L2 3004 3062 -210 388 351 64 6 chr1 48538252 48538423 -233655241 - MIR SINE MIR -12 250 70 548 294 80 55 chr1 48538582 48538653 -233655011 - L3 LINE CR1 -3 1574 1506 1372 181 42 125 chr1 48538653 48538809 -233654855 + MLT1A2 LTR MaLR 1 168 -206 2266 93 7 0 chr1 48538809 48539098 -233654566 + AluSp SINE Alu 1 291 -22 1372 181 42 125 chr1 48539098 48539116 -233654548 + MLT1A2 LTR MaLR 168 186 -188 2131 128 3 13 chr1 48539116 48539252 -233654412 + AluSx SINE Alu 1 137 -175 2416 58 3 3 chr1 48539252 48539573 -233654091 + AluY SINE Alu 1 311 0 2131 128 3 13 chr1 48539573 48539742 -233653922 + AluSx SINE Alu 137 303 -9 1372 181 42 125 chr1 48539742 48539974 -233653690 + MLT1A2 LTR MaLR 186 374 0 548 294 80 55 chr1 48539974 48539993 -233653671 - L3 LINE CR1 -71 1506 1489 2166 120 6 22 chr1 48539993 48540310 -233653354 - AluSx SINE Alu 0 312 1 548 294 80 55 chr1 48540310 48540545 -233653119 - L3 LINE CR1 -88 1489 1240 349 360 0 0 chr1 48540562 48540676 -233652988 + L2 LINE L2 3199 3312 -1 231 260 27 14 chr1 48540689 48540762 -233652902 - L3 LINE CR1 -355 1222 1149 2152 133 0 3 chr1 48540971 48541279 -233652385 + AluSq SINE Alu 1 307 -6 311 281 62 31 chr1 48541366 48541494 -233652170 + MIR3 SINE MIR 3 134 -74 516 301 53 14 chr1 48541619 48541828 -233651836 + MIR SINE MIR 5 221 -41 237 231 19 0 chr1 48542044 48542096 -233651568 + CT-rich Low_complexity Low_complexity 1 53 0 277 200 88 100 chr1 48542125 48542205 -233651459 + L2 LINE L2 3235 3313 0 487 249 134 55 chr1 48542279 48542644 -233651020 - L1ME4a LINE L1 -4 6117 5724 2477 88 0 0 chr1 48542651 48542956 -233650708 - AluSg SINE Alu -5 305 1 2043 153 3 10 chr1 48542964 48543278 -233650386 - AluSx SINE Alu 0 312 1 828 198 47 82 chr1 48543290 48543406 -233650258 - MIR SINE MIR -14 248 129 2516 67 0 0 chr1 48543406 48543704 -233649960 - AluY SINE Alu -12 299 2 828 198 47 82 chr1 48543704 48543844 -233649820 - MIR SINE MIR -133 129 1 352 289 9 18 chr1 48543875 48543989 -233649675 - L1ME4a LINE L1 -436 5685 5573 2548 72 3 0 chr1 48544433 48544737 -233648927 - AluSq SINE Alu -8 305 1 2271 93 7 0 chr1 48544755 48545044 -233648620 - AluSp SINE Alu -22 291 1 567 233 82 0 chr1 48545054 48545200 -233648464 - MLT1A2 LTR MaLR -216 158 1 388 351 64 6 chr1 48545430 48545601 -233648063 + MIR SINE MIR 70 250 -12 201 317 0 17 chr1 48545752 48545812 -233647852 - L2 LINE L2 -210 3062 3004 1624 170 65 0 chr1 48545821 48546098 -233647566 + AluJo SINE Alu 1 295 -17 247 308 110 82 chr1 48546236 48547124 -233646540 + L2 LINE L2 777 1639 -1675 2313 112 0 0 chr1 48547124 48547420 -233646244 - AluSx SINE Alu -16 296 1 247 308 110 82 chr1 48547420 48547561 -233646103 + L2 LINE L2 1639 1843 -1471 677 218 13 0 chr1 48547561 48547717 -233645947 - L1MA10 LINE L1 0 6334 6177 247 308 110 82 chr1 48547717 48547779 -233645885 + L2 LINE L2 1843 1902 -1412 478 135 202 0 chr1 48547781 48547870 -233645794 + U6 snRNA snRNA 1 107 0 248 359 11 0 chr1 48547934 48548026 -233645638 + L2 LINE L2 2303 2395 -919 603 297 84 62 chr1 48548103 48548809 -233644855 + L2 LINE L2 2545 3270 -2 415 315 116 6 chr1 48548804 48548985 -233644679 - MIR SINE MIR -6 256 56 * 275 333 65 30 chr1 48549064 48549232 -233644432 - MIR SINE MIR -50 212 39 306 267 0 11 chr1 48550063 48550153 -233643511 - MER5C DNA MER1_type -203 121 33 225 100 0 0 chr1 48550154 48550184 -233643480 - Charlie1 DNA MER1_type -2731 30 1 367 239 85 39 chr1 48550269 48550399 -233643265 + MIR SINE MIR 20 155 -107 664 295 27 16 chr1 48550467 48550877 -233642787 + MLT1K LTR MaLR 111 570 -18 2360 119 0 0 chr1 48550881 48551193 -233642471 - AluSx SINE Alu 0 312 1 277 291 0 0 chr1 48551215 48551294 -233642370 + MIR SINE MIR 183 261 -1 200 258 194 0 chr1 48551298 48551422 -233642242 - L2 LINE L2 0 3313 3166 2346 112 0 0 chr1 48551522 48551827 -233641837 + AluSx SINE Alu 6 310 -2 1164 162 5 11 chr1 48552106 48552291 -233641373 + AluJo SINE Alu 113 296 -16 1858 175 3 3 chr1 48552341 48552633 -233641031 + AluJo SINE Alu 1 292 -20 361 336 19 0 chr1 48552985 48553089 -233640575 - MIR SINE MIR -110 152 47 202 284 30 0 chr1 48553356 48553423 -233640241 + CT-rich Low_complexity Low_complexity 4 72 0 524 297 89 21 chr1 48553560 48553796 -233639868 - MIR SINE MIR -9 253 2 293 286 29 25 chr1 48553878 48554014 -233639650 + MIR SINE MIR 19 157 -51 2098 158 0 0 chr1 48554246 48554550 -233639114 - AluSx SINE Alu -8 304 1 208 194 45 15 chr1 48555713 48555780 -233637884 + L2 LINE L2 2828 2896 -418 972 217 20 5 chr1 48555780 48555983 -233637681 + MLT2C2 LTR ERVL 192 397 -67 921 172 0 0 chr1 48555984 48556164 -233637500 + (CA)n Simple_repeat Simple_repeat 1 180 0 352 289 124 0 chr1 48556355 48556476 -233637188 - MIR SINE MIR -95 167 32 435 308 49 16 chr1 48556894 48557043 -233636621 + MIR SINE MIR 65 223 -39 2443 88 3 0 chr1 48557043 48557340 -233636324 + AluSp SINE Alu 1 298 -15 435 308 49 16 chr1 48557340 48557375 -233636289 + MIR SINE MIR 223 255 -7 243 0 0 0 chr1 48557982 48558009 -233635655 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 212 267 0 0 chr1 48558603 48558663 -233635001 + A-rich Low_complexity Low_complexity 4 63 0 846 227 54 57 chr1 48558770 48558938 -233634726 - LTR37A LTR ERV1 -16 410 243 1741 192 7 10 chr1 48558938 48559230 -233634434 + AluJb SINE Alu 1 291 -21 846 227 54 57 chr1 48559230 48559272 -233634392 - LTR37A LTR ERV1 -183 243 202 2166 122 7 3 chr1 48559272 48559576 -233634088 + AluSp SINE Alu 2 306 -7 846 227 54 57 chr1 48559576 48559695 -233633969 - LTR37A LTR ERV1 -224 202 81 1042 160 0 48 chr1 48560404 48560591 -233633073 + FRAM SINE Alu 1 173 -3 2130 167 62 20 chr1 48561231 48561679 -233631985 - MLT1C LTR MaLR 0 467 1 581 314 30 34 chr1 48561731 48562013 -233631651 + LTR16B LTR ERVL 108 445 -5 602 288 60 14 chr1 48562041 48562256 -233631408 + HERV16 LTR ERVL 57 281 -4715 907 236 5 14 chr1 48562336 48562544 -233631120 + HERV16 LTR ERVL 2031 2236 -2760 1332 198 0 13 chr1 48562649 48562886 -233630778 + Tigger7 DNA MER2_type 1 234 -471 498 143 0 159 chr1 48562887 48562909 -233630755 + Tigger7 DNA MER2_type 2482 2506 -81 2144 127 10 3 chr1 48562909 48563216 -233630448 + AluSx SINE Alu 1 309 -3 498 143 0 159 chr1 48563216 48563319 -233630345 + Tigger7 DNA MER2_type 2506 2587 0 734 183 15 0 chr1 48563408 48563545 -233630119 + FLAM_C SINE Alu 2 140 -3 2213 315 18 15 chr1 48563566 48564519 -233629145 + HERV16 LTR ERVL 2388 3096 -1900 369 269 60 75 chr1 48564651 48564785 -233628879 + HERV16 LTR ERVL 3237 3368 -1628 719 346 50 20 chr1 48564788 48565146 -233628518 + HERV16 LTR ERVL 4688 5056 -708 272 267 78 22 chr1 48565205 48565295 -233628369 + HERV16 LTR ERVL 4602 4696 -300 508 268 52 7 chr1 48565882 48566035 -233627629 + MIR SINE MIR 50 209 -53 829 235 35 26 chr1 48566196 48566426 -233627238 + MIR SINE MIR 31 262 0 451 208 0 30 chr1 48566549 48566650 -233627014 - MIR SINE MIR -65 143 46 1448 78 54 0 chr1 48566993 48567198 -233626466 - MER30 DNA MER1_type -14 216 1 209 296 61 51 chr1 48567203 48567301 -233626363 + MIR SINE MIR 37 135 -73 408 227 52 36 chr1 48567515 48567665 -233625999 - MIR SINE MIR -6 256 102 189 371 40 16 chr1 48568717 48568841 -233624823 + L3 LINE CR1 304 430 -1147 307 341 39 8 chr1 48569252 48569381 -233624283 + L3 LINE CR1 445 577 -1000 618 271 6 12 chr1 48569623 48569789 -233623875 + MIR SINE MIR 8 172 -90 528 233 50 93 chr1 48569794 48570052 -233623612 + MER112 DNA MER1_type 1 247 -13 2547 84 0 0 chr1 48570063 48570371 -233623293 + AluSx SINE Alu 1 308 -4 249 324 0 0 chr1 48570424 48570492 -233623172 + L3 LINE CR1 1083 1150 -427 190 348 148 13 chr1 48570599 48570835 -233622829 + L3 LINE CR1 1204 1471 -106 534 245 174 7 chr1 48571685 48571840 -233621824 - MER5A DNA MER1_type 0 189 9 1922 140 4 4 chr1 48572588 48572860 -233620804 + AluSq SINE Alu 24 295 -18 2162 120 7 0 chr1 48572926 48573217 -233620447 - AluSg SINE Alu -17 293 1 2225 100 7 0 chr1 48573457 48573770 -233619894 - AluSp SINE Alu 0 315 1 362 335 29 0 chr1 48574209 48574379 -233619285 + MIR3 SINE MIR 25 199 -9 2433 97 0 0 chr1 48574429 48574738 -233618926 - AluSx SINE Alu -3 309 1 263 315 9 63 chr1 48574822 48574933 -233618731 - L2 LINE L2 -49 3223 3119 224 294 110 6 chr1 48574958 48575121 -233618543 - L2 LINE L2 -296 3017 2838 197 350 25 0 chr1 48575846 48575926 -233617738 - MIR SINE MIR -94 114 33 504 295 6 22 chr1 48576595 48576778 -233616886 + (TGG)n Simple_repeat Simple_repeat 1 180 0 216 292 11 60 chr1 48576807 48576992 -233616672 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 282 329 7 21 chr1 48577068 48577208 -233616456 + (TGG)n Simple_repeat Simple_repeat 3 140 0 180 0 0 0 chr1 48577573 48577593 -233616071 + (CTGGGG)n Simple_repeat Simple_repeat 6 25 0 487 314 135 0 chr1 48578017 48578246 -233615418 + MIR SINE MIR 3 262 0 326 294 56 31 chr1 48578245 48578405 -233615259 + MIR SINE MIR 68 231 -31 * 238 167 0 83 chr1 48578711 48578771 -233614893 + CT-rich Low_complexity Low_complexity 4 58 0 360 64 0 0 chr1 48578777 48578824 -233614840 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 249 337 7 113 chr1 48579502 48579610 -233614054 - L2 LINE L2 -172 3100 2982 2235 74 0 89 chr1 48579610 48579935 -233613729 + AluSp SINE Alu 1 296 -17 2365 78 3 0 chr1 48579941 48580235 -233613429 + AluY SINE Alu 5 299 -12 249 337 7 113 chr1 48580235 48580410 -233613254 - L2 LINE L2 -295 2977 2841 248 189 162 27 chr1 48580420 48580494 -233613170 - MIR SINE MIR -12 250 167 650 129 0 26 chr1 48580499 48580615 -233613049 + MER4A LTR ERV1 1 113 -551 1438 87 0 0 chr1 48580615 48580788 -233612876 + AluSq SINE Alu 1 173 -140 494 150 267 64 chr1 48580789 48580976 -233612688 + MER4A LTR ERV1 118 342 -322 461 197 228 0 chr1 48581071 48581198 -233612466 + MER4C LTR ERV1 300 455 -10 469 248 117 0 chr1 48581214 48581351 -233612313 - MIR SINE MIR -104 158 6 201 281 62 0 chr1 48581499 48581595 -233612069 + (CGTG)n Simple_repeat Simple_repeat 4 105 0 416 289 8 0 chr1 48582237 48582358 -233611306 - MIR3 SINE MIR -38 170 49 279 0 0 0 chr1 48582611 48582642 -233611022 + (TG)n Simple_repeat Simple_repeat 1 31 0 180 0 0 0 chr1 48583147 48583167 -233610497 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1571 156 25 44 chr1 48583167 48583432 -233610232 - AluJo SINE Alu -31 281 20 202 273 0 0 chr1 48583628 48583672 -233609992 + L2 LINE L2 3227 3270 -2 293 343 17 6 chr1 48584535 48584713 -233608951 + (TG)n Simple_repeat Simple_repeat 1 180 0 1415 79 5 8 chr1 48584891 48585107 -233608557 - AluSq SINE Alu -15 298 1 183 143 0 29 chr1 48585108 48585143 -233608521 + MIR3 SINE MIR 157 190 -18 434 342 61 5 chr1 48585213 48585415 -233608249 + MIR SINE MIR 22 230 -32 279 133 0 0 chr1 48585430 48585475 -233608189 + (TG)n Simple_repeat Simple_repeat 2 46 0 213 306 35 0 chr1 48586034 48586119 -233607545 - L2 LINE L2 -251 3021 2934 348 304 47 7 chr1 48586188 48586336 -233607328 - MIR3 SINE MIR -32 176 23 33 25 0 0 chr1 48587328 48587368 -233606296 + GC_rich Low_complexity Low_complexity 1 40 0 195 330 11 23 chr1 48587633 48587721 -233605943 - MIR SINE MIR -123 139 53 302 316 30 23 chr1 48587757 48587890 -233605774 - MIR SINE MIR -97 165 32 205 284 30 15 chr1 48589041 48589108 -233604556 + MIR3 SINE MIR 138 205 -3 403 272 74 12 chr1 48589167 48589329 -233604335 - MIR3 SINE MIR -6 202 31 595 221 46 122 chr1 48589640 48589798 -233603866 + MIR SINE MIR 5 137 -125 783 178 0 15 chr1 48589798 48589933 -233603731 + FLAM_C SINE Alu 1 133 0 595 221 46 122 chr1 48589933 48590037 -233603627 + MIR SINE MIR 137 247 -15 278 222 63 13 chr1 48590895 48591003 -233602661 - MIR SINE MIR -63 145 32 180 0 0 0 chr1 48591041 48591061 -233602603 + (CA)n Simple_repeat Simple_repeat 2 21 0 509 303 90 7 chr1 48591070 48591347 -233602317 - L1ME4a LINE L1 -6 6115 5816 230 274 122 51 chr1 48591432 48591611 -233602053 + MIR3 SINE MIR 2 188 -37 2092 140 13 10 chr1 48591644 48591952 -233601712 + AluSx SINE Alu 2 310 -2 2186 135 0 0 chr1 48592062 48592358 -233601306 - AluSx SINE Alu -16 296 1 620 280 40 18 chr1 48592386 48592611 -233601053 - MIR SINE MIR -27 235 6 243 347 33 0 chr1 48592990 48593111 -233600553 + L1ME3A LINE L1 6038 6162 -8 1300 287 41 55 chr1 48593392 48593904 -233599760 - ERVL LTR ERVL -2668 3096 2592 332 360 25 0 chr1 48593897 48594058 -233599606 - ERVL LTR ERVL -4462 1302 1138 * 2372 86 33 0 chr1 48594225 48594527 -233599137 - AluSx SINE Alu 0 312 1 2327 106 49 10 chr1 48594535 48594847 -233598817 - L1PB4 LINE L1 0 6156 5825 2585 71 0 0 chr1 48594847 48595157 -233598507 - AluY SINE Alu -1 310 1 2327 106 49 10 chr1 48595157 48595232 -233598432 - L1PB4 LINE L1 -331 5825 5754 488 226 0 0 chr1 48595973 48596066 -233597598 - Tigger4(Zombi) DNA MER2_type -2607 124 32 267 287 25 51 chr1 48596472 48596629 -233597035 + LTR16C LTR ERVL 339 491 0 1709 127 136 22 chr1 48596870 48597194 -233596470 + MER46B DNA MER2_type 1 236 0 2185 210 114 10 chr1 48597194 48597703 -233595961 + MLT1F1 LTR MaLR 5 567 0 333 226 157 43 chr1 48597734 48597849 -233595815 + MIR SINE MIR 110 237 -25 531 0 0 0 chr1 48598147 48598206 -233595458 + (TA)n Simple_repeat Simple_repeat 2 60 0 464 46 31 0 chr1 48598206 48598271 -233595393 - AluY SINE Alu -4 306 240 358 272 75 69 chr1 48598274 48598448 -233595216 - L1ME LINE L1 -513 5608 5434 283 59 0 0 chr1 48598457 48598491 -233595173 - MSTA LTR MaLR 0 428 395 2224 93 3 62 chr1 48598495 48598817 -233594847 + AluSx SINE Alu 1 303 -9 2377 106 43 61 chr1 48598841 48598897 -233594767 - MSTA LTR MaLR -20 401 346 2207 107 3 3 chr1 48598897 48599186 -233594478 + AluSq SINE Alu 1 289 -24 2377 106 43 61 chr1 48599186 48599548 -233594116 - MSTA LTR MaLR -75 346 1 280 227 53 0 chr1 48599549 48599624 -233594040 - L1ME LINE L1 -745 5425 5347 432 51 0 0 chr1 48600271 48600330 -233593334 + (TG)n Simple_repeat Simple_repeat 2 60 0 1052 188 19 39 chr1 48600330 48600576 -233593088 - L1MC4 LINE L1 -143 7899 7657 2320 110 0 0 chr1 48600586 48600887 -233592777 - AluY SINE Alu -10 301 1 2304 101 3 0 chr1 48600892 48601189 -233592475 - AluSg SINE Alu -12 298 1 1919 117 58 3 chr1 48601195 48601486 -233592178 - AluSg SINE Alu -2 308 2 1970 173 81 39 chr1 48601550 48602008 -233591656 - MLT1D LTR MaLR 0 505 29 548 160 10 10 chr1 48602018 48602118 -233591546 - L1MC4 LINE L1 -490 7552 7453 493 267 116 34 chr1 48602104 48602482 -233591182 - L1ME LINE L1 -1812 4334 3926 * 537 294 65 103 chr1 48602482 48602744 -233590920 - HERV16 LTR ERVL -2166 2830 2579 700 226 51 62 chr1 48602978 48603230 -233590434 - LTR49-int LTR ERV1 -2969 1967 1717 2359 73 0 26 chr1 48603230 48603533 -233590131 - AluY SINE Alu -16 295 1 700 226 51 62 chr1 48603533 48603572 -233590092 - LTR49-int LTR ERV1 -3219 1717 1679 998 204 49 31 chr1 48603581 48603979 -233589685 - LTR49-int LTR ERV1 -3523 1413 1198 535 237 0 50 chr1 48604037 48604176 -233589488 - LTR49-int LTR ERV1 -4507 429 298 269 208 0 0 chr1 48604210 48604263 -233589401 - LTR49-int LTR ERV1 -4688 1643 1591 251 286 0 0 chr1 48604267 48604323 -233589341 - MER67B LTR ERV1 -459 202 147 2438 85 160 5 chr1 48604510 48604898 -233588766 + LTR7 LTR ERV1 1 448 -2 20988 95 15 14 chr1 48604900 48607885 -233585779 + HERVH LTR ERV1 1 2987 -4726 876 155 20 0 chr1 48607879 48608027 -233585637 + HERVH LTR ERV1 3140 3290 -4423 * 3745 83 0 6 chr1 48608017 48608522 -233585142 + HERVH LTR ERV1 3492 3993 -3720 4241 122 49 0 chr1 48608524 48609155 -233584509 + HERVH LTR ERV1 4488 5149 -2564 1414 115 23 9 chr1 48609156 48609373 -233584291 + HERVH LTR ERV1 5600 5819 -1894 * 2470 87 48 13 chr1 48609371 48609750 -233583914 + HERVH LTR ERV1 7322 7713 0 2024 82 44 7 chr1 48609750 48610136 -233583528 + LTR7 LTR ERV1 1 448 -2 1256 63 74 0 chr1 48610261 48610436 -233583228 + LTR7 LTR ERV1 261 448 -2 731 178 16 76 chr1 48610521 48610706 -233582958 - MER65-int LTR ERV1 -6747 790 617 417 274 12 95 chr1 48610706 48610874 -233582790 - MER65-int LTR ERV1 -4017 854 701 271 88 53 35 chr1 48611084 48611141 -233582523 - MER65-int LTR ERV1 -4267 604 547 806 280 19 90 chr1 48611423 48611562 -233582102 - MER65A LTR ERV1 0 445 298 2232 102 3 0 chr1 48611562 48611855 -233581809 - AluSx SINE Alu -14 298 5 806 280 19 90 chr1 48611855 48612194 -233581470 - MER65A LTR ERV1 -147 298 1 * 967 215 129 50 chr1 48612194 48612549 -233581115 + HsTC2 DNA Tc2 1515 1898 0 9336 90 6 18 chr1 48613216 48613260 -233580404 + L1PA7 LINE L1 1809 1852 -4294 2487 93 3 0 chr1 48613260 48613571 -233580093 - AluSp SINE Alu -1 312 1 9336 90 6 18 chr1 48613571 48614884 -233578780 + L1PA7 LINE L1 1852 3150 -2996 7035 61 5 0 chr1 48614885 48616337 -233577327 + L1PA7 LINE L1 4680 6124 -30 189 0 0 0 chr1 48616337 48616358 -233577306 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 336 24 0 0 chr1 48616357 48616398 -233577266 + (TG)n Simple_repeat Simple_repeat 2 42 0 7035 61 5 0 chr1 48616358 48616402 -233577262 + L1PA7 LINE L1 6124 6140 -14 5674 159 35 0 chr1 48616403 48618246 -233575418 + L1PB4 LINE L1 4250 6154 -2 196 359 43 34 chr1 48618249 48618366 -233575298 - MIR SINE MIR -128 134 17 1001 114 0 0 chr1 48618822 48618962 -233574702 - AluSg/x SINE Alu -11 299 160 911 193 0 0 chr1 48619583 48619759 -233573905 - AluJb SINE Alu 0 311 136 291 267 20 0 chr1 48620060 48620161 -233573503 - L1M4 LINE L1 -2168 3978 3876 5932 208 49 68 chr1 48620296 48622054 -233571610 - MER52A LTR ERV1 -2 1742 29 2524 73 0 6 chr1 48622324 48622637 -233571027 + AluY SINE Alu 1 311 0 316 305 126 22 chr1 48622738 48622856 -233570808 - MIR SINE MIR 0 262 158 1932 134 70 22 chr1 48622856 48623214 -233570450 - THE1C LTR MaLR 0 375 1 316 305 126 22 chr1 48623214 48623318 -233570346 - MIR SINE MIR -104 158 17 2351 102 0 0 chr1 48623894 48624187 -233569477 - AluSc SINE Alu -16 293 1 2257 111 13 0 chr1 48624215 48624521 -233569143 - LTR22A LTR ERVK 0 458 149 1714 169 25 6 chr1 48624524 48624945 -233568719 - L1M4 LINE L1 -728 5456 5029 477 0 0 0 chr1 48624960 48625013 -233568651 + (TG)n Simple_repeat Simple_repeat 2 54 0 991 183 12 0 chr1 48625020 48625189 -233568475 - AluJb SINE Alu -7 305 135 451 176 0 0 chr1 48625190 48625275 -233568389 - L1M4 LINE L1 -1105 5041 4957 1715 128 164 10 chr1 48625275 48625580 -233568084 - MSTA LTR MaLR 0 428 77 5057 87 219 113 chr1 48625584 48626730 -233566934 - pTR5 LTR ERV1 0 2438 1172 188 204 82 0 chr1 48626889 48626938 -233566726 - MIR SINE MIR -81 181 129 1907 121 68 16 chr1 48627104 48627426 -233566238 - MER44D DNA MER2_type 0 609 1 239 229 0 0 chr1 48627444 48627492 -233566172 + (CTCA)n Simple_repeat Simple_repeat 4 51 0 6474 42 8 0 chr1 48627511 48628276 -233565388 - L1PA5 LINE L1 -2 6152 5382 191 290 110 10 chr1 48628281 48628381 -233565283 - L2 LINE L2 -13 3300 3191 1522 158 106 17 chr1 48628711 48629003 -233564661 - MER7A DNA MER2_type 0 346 31 264 140 20 0 chr1 48629898 48629948 -233563716 - L1MD3 LINE L1 -19 7976 7926 2828 243 51 79 chr1 48629953 48630054 -233563610 + L1M4b LINE L1 11 113 -6746 1404 193 91 4 chr1 48630054 48630329 -233563335 + AluJb SINE Alu 1 299 -13 2828 243 51 79 chr1 48630329 48631200 -233562464 + L1M4b LINE L1 113 956 -5903 249 211 39 0 chr1 48631440 48631492 -233562172 + L1M4b LINE L1 1170 1223 -5636 2269 220 84 35 chr1 48631713 48631893 -233561771 + L1M4b LINE L1 1190 1360 -5495 207 0 0 0 chr1 48631893 48631916 -233561748 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2269 220 84 35 chr1 48631916 48632529 -233561135 + L1M4b LINE L1 1360 2022 -4833 2286 89 0 0 chr1 48632556 48632838 -233560826 + AluSc SINE Alu 1 282 -27 750 260 16 47 chr1 48632853 48633111 -233560553 - L1M4 LINE L1 -2412 4694 4445 2163 104 0 0 chr1 48633115 48633423 -233560241 - AluY SINE Alu 0 308 1 1652 153 0 33 chr1 48633506 48633806 -233559858 - AluSx SINE Alu -4 308 19 333 213 0 0 chr1 48633907 48633982 -233559682 + MIR SINE MIR 177 251 -11 229 220 101 46 chr1 48634121 48634230 -233559434 - L1M4 LINE L1 -6085 945 831 345 250 23 0 chr1 48634571 48634659 -233559005 + L1MB3 LINE L1 5632 5721 -400 298 224 56 19 chr1 48634675 48634782 -233558882 + LTR16A1 LTR ERVL 57 167 -290 2202 204 25 12 chr1 48634854 48635340 -233558324 + L1MB3 LINE L1 5690 6181 -2 23 0 0 0 chr1 48635754 48635777 -233557887 + AT_rich Low_complexity Low_complexity 1 23 0 2410 87 0 0 chr1 48635781 48636081 -233557583 + AluY SINE Alu 2 301 -10 833 314 70 16 chr1 48636101 48636473 -233557191 - L1ME4a LINE L1 -150 5971 5580 831 193 52 149 chr1 48636512 48636900 -233556764 - L1MD2 LINE L1 -8 6234 5885 2029 122 19 53 chr1 48636900 48637144 -233556520 - L1MA4A LINE L1 -5 6298 6070 2178 115 6 13 chr1 48637144 48637457 -233556207 + AluSx SINE Alu 1 311 -1 2029 122 19 53 chr1 48637457 48637588 -233556076 - L1MA4A LINE L1 -233 6070 5936 1162 128 0 0 chr1 48637590 48637746 -233555918 - AluSg/x SINE Alu -22 290 135 4465 99 12 50 chr1 48637747 48638381 -233555283 - L1MA4A LINE L1 -355 5948 5343 2207 108 3 0 chr1 48638381 48638678 -233554986 - AluSq SINE Alu -15 298 1 4465 99 12 50 chr1 48638678 48638880 -233554784 - L1MA4A LINE L1 -960 5343 5135 3435 166 14 19 chr1 48638879 48639517 -233554147 - L1MD2 LINE L1 -354 5888 5254 * 220 208 21 0 chr1 48640223 48640271 -233553393 + L2 LINE L2 3250 3298 -15 461 314 63 0 chr1 48640289 48640464 -233553200 - MIR SINE MIR -70 192 7 265 248 119 46 chr1 48640651 48640760 -233552904 - L2 LINE L2 -20 3252 3136 228 254 30 15 chr1 48641319 48641386 -233552278 - L2 LINE L2 -19 3253 3186 327 242 30 20 chr1 48641929 48642028 -233551636 - L2 LINE L2 -6 3307 3208 2165 117 3 25 chr1 48642811 48643127 -233550537 + AluJo SINE Alu 1 309 -3 567 284 38 50 chr1 48643327 48643644 -233550020 - L2 LINE L2 -2 3311 2999 1745 135 85 0 chr1 48644188 48644479 -233549185 + AluSx SINE Alu 1 313 0 300 207 36 54 chr1 48644592 48644703 -233548961 + L1ME4a LINE L1 5982 6090 -31 1527 211 4 0 chr1 48644938 48645217 -233548447 + AluJb SINE Alu 3 282 -30 239 319 0 0 chr1 48645359 48645428 -233548236 - L2 LINE L2 0 3272 3204 202 301 32 11 chr1 48646190 48646283 -233547381 + MIR SINE MIR 32 126 -136 237 286 42 17 chr1 48646897 48647016 -233546648 - L2 LINE L2 -85 3228 3107 413 305 71 9 chr1 48648817 48649027 -233544637 - MIR SINE MIR -6 256 34 377 243 159 9 chr1 48649376 48649483 -233544181 + MIR SINE MIR 70 192 -70 243 0 0 0 chr1 48649544 48649571 -233544093 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1019 234 28 0 chr1 48649778 48649996 -233543668 - MER58A DNA MER1_type 0 224 1 1757 226 79 56 chr1 48650318 48650371 -233543293 - MLT1G LTR MaLR 0 590 540 2140 106 3 0 chr1 48650371 48650663 -233543001 + AluSx SINE Alu 1 293 -19 1757 226 79 56 chr1 48650663 48651217 -233542447 - MLT1G LTR MaLR -50 540 12 230 296 178 15 chr1 48652010 48652145 -233541519 - L2 LINE L2 -518 2796 2640 1196 250 198 9 chr1 48652274 48652901 -233540763 + L2 LINE L2 2346 3106 -207 1648 194 33 42 chr1 48653207 48653568 -233540096 - MLT1A1 LTR MaLR -7 358 1 1018 190 10 25 chr1 48654188 48654388 -233539276 - MER20 DNA MER1_type 0 219 23 475 291 87 56 chr1 48654732 48655145 -233538519 + L2 LINE L2 2540 2965 -349 16634 96 6 16 chr1 48655250 48657628 -233536036 + HERVH LTR ERV1 635 2987 -4726 829 169 20 0 chr1 48657622 48657770 -233535894 + HERVH LTR ERV1 3140 3290 -4423 * 1871 60 0 4 chr1 48657760 48657993 -233535671 + HERVH LTR ERV1 3492 3723 -3990 470 274 125 49 chr1 48658244 48658783 -233534881 + L2 LINE L2 2640 3220 -93 402 196 0 0 chr1 48661432 48661524 -233532140 + C-rich Low_complexity Low_complexity 2 93 0 482 211 121 30 chr1 48663793 48663959 -233529705 - L1M4 LINE L1 -2993 3153 2973 2274 76 3 0 chr1 48664194 48664483 -233529181 + AluSp SINE Alu 1 290 -23 986 85 0 0 chr1 48664491 48664620 -233529044 + AluSg/x SINE Alu 169 297 -15 456 323 169 19 chr1 48664671 48665102 -233528562 + L2 LINE L2 1897 2392 -922 205 363 120 17 chr1 48665144 48665378 -233528286 + L2 LINE L2 2626 2883 -431 1818 166 0 7 chr1 48665591 48665898 -233527766 - AluJo SINE Alu 0 312 8 594 298 123 53 chr1 48665899 48666564 -233527100 + L2 LINE L2 2520 3231 -41 931 238 34 51 chr1 48668687 48668718 -233524946 - L1ME4a LINE L1 -254 5867 5837 2180 69 0 14 chr1 48668718 48669036 -233524628 - AluY SINE Alu 0 314 1 931 238 34 51 chr1 48669036 48669355 -233524309 - L1ME4a LINE L1 -284 5837 5521 697 111 0 0 chr1 48669600 48669690 -233523974 - 5S rRNA rRNA -31 90 1 192 343 37 0 chr1 48669752 48669860 -233523804 + L2 LINE L2 1597 1708 -1606 714 328 38 8 chr1 48669868 48670130 -233523534 + L2 LINE L2 1135 1404 -1910 470 288 74 80 chr1 48670357 48670561 -233523103 - L1MC4a LINE L1 -1913 5895 5691 2349 82 3 0 chr1 48670561 48670865 -233522799 - AluSc SINE Alu -4 305 1 470 288 74 80 chr1 48670865 48671149 -233522515 - L1MC4a LINE L1 -2117 5691 5410 2260 269 50 26 chr1 48671183 48672225 -233521439 + L1M4c LINE L1 913 2129 -4434 12589 205 49 29 chr1 48672230 48673153 -233520511 + L1MB7 LINE L1 1730 2633 -3620 2237 93 0 10 chr1 48673153 48673464 -233520200 - AluSp SINE Alu -5 308 1 2184 105 0 3 chr1 48673464 48673767 -233519897 - AluSp SINE Alu -10 303 1 12589 205 49 29 chr1 48673767 48674500 -233519164 + L1MB7 LINE L1 2633 3350 -2903 2357 76 0 0 chr1 48674500 48674801 -233518863 - AluY SINE Alu -10 301 1 12589 205 49 29 chr1 48674801 48675537 -233518127 + L1MB7 LINE L1 3350 4070 -2183 2468 59 0 0 chr1 48675537 48675840 -233517824 + AluY SINE Alu 1 303 -8 12589 205 49 29 chr1 48675840 48676054 -233517610 + L1MB7 LINE L1 4070 4278 -1975 2546 134 50 29 chr1 48676054 48676471 -233517193 + MSTB LTR MaLR 1 426 0 12589 205 49 29 chr1 48676471 48678002 -233515662 + L1MB7 LINE L1 4278 5918 -335 1856 165 0 0 chr1 48678002 48678299 -233515365 + AluJb SINE Alu 1 297 -15 12589 205 49 29 chr1 48678299 48678642 -233515022 + L1MB7 LINE L1 5918 6253 0 460 237 121 9 chr1 48678647 48678879 -233514785 - L1M4 LINE L1 -3579 2567 2310 290 288 52 11 chr1 48678905 48679083 -233514581 - L1ME LINE L1 -422 5699 5519 2471 62 0 0 chr1 48679467 48679776 -233513888 - AluY SINE Alu -2 309 1 931 190 0 0 chr1 48679850 48680013 -233513651 - AluJb SINE Alu -16 296 134 1594 123 72 47 chr1 48680013 48680164 -233513500 - AluSx SINE Alu -16 296 133 1757 110 0 0 chr1 48680164 48680409 -233513255 - AluSg SINE Alu -6 304 60 1594 123 72 47 chr1 48680409 48680534 -233513130 - AluSx SINE Alu -179 133 13 21 0 0 0 chr1 48681336 48681357 -233512307 + AT_rich Low_complexity Low_complexity 1 21 0 848 276 44 9 chr1 48681433 48681661 -233512003 + MIR SINE MIR 1 236 -26 303 321 124 50 chr1 48681935 48682153 -233511511 + L1ME4a LINE L1 5808 6041 -80 685 170 83 29 chr1 48682945 48683230 -233510434 - Tigger5 DNA MER2_type -4 2319 1 181 318 0 0 chr1 48683310 48683354 -233510310 + L2 LINE L2 3262 3305 -8 860 211 76 17 chr1 48683983 48684213 -233509451 + MIR SINE MIR 15 262 0 2021 114 7 0 chr1 48684731 48685021 -233508643 + AluSx SINE Alu 1 292 -20 560 161 161 50 chr1 48685657 48685837 -233507827 - ORSL DNA AcHobo -12 263 64 258 98 33 16 chr1 48685841 48685890 -233507774 + (TA)n Simple_repeat Simple_repeat 2 54 -9 2176 94 3 0 chr1 48685890 48686178 -233507486 - AluSp SINE Alu -24 289 1 258 98 33 16 chr1 48686178 48686189 -233507475 + (TA)n Simple_repeat Simple_repeat 54 63 0 222 348 107 17 chr1 48686287 48686465 -233507199 - L2 LINE L2 -924 2390 2197 240 306 90 18 chr1 48686595 48686706 -233506958 + L2 LINE L2 3138 3256 -16 502 273 37 42 chr1 48686743 48686806 -233506858 + L2 LINE L2 1968 2030 -1284 7522 37 8 0 chr1 48686806 48688059 -233505605 - L1PA5 LINE L1 -6 6148 4891 502 273 37 42 chr1 48688059 48688211 -233505453 + L2 LINE L2 2030 2182 -1132 1620 125 85 44 chr1 48688234 48688506 -233505158 + MER1B DNA MER1_type 57 339 0 1925 272 100 17 chr1 48688506 48689542 -233504122 + L2 LINE L2 2176 3313 0 235 226 19 28 chr1 48689549 48689629 -233504035 - MIR SINE MIR -75 187 110 799 331 151 29 chr1 48689698 48690082 -233503582 + MER115 DNA AcHobo 1 431 -262 384 294 0 34 chr1 48690093 48690270 -233503394 + L1ME3A LINE L1 1004 1174 -5031 1483 185 22 4 chr1 48690294 48690570 -233503094 + AluJo SINE Alu 2 282 -30 208 0 62 0 chr1 48690574 48690606 -233503058 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 313 191 56 45 chr1 48690757 48690846 -233502818 + L1MC4 LINE L1 6614 6703 -1339 313 246 219 46 chr1 48690881 48691210 -233502454 + L1ME3A LINE L1 1432 1817 -4579 2165 104 0 3 chr1 48691265 48691563 -233502101 - AluSc SINE Alu -12 297 1 358 290 78 6 chr1 48691564 48691784 -233501880 + L1ME3A LINE L1 4157 4408 -1807 673 252 53 54 chr1 48691810 48692528 -233501136 + L1ME3A LINE L1 5201 5973 -266 234 298 48 16 chr1 48692544 48692668 -233500996 + L1ME3A LINE L1 6106 6233 -6 200 118 20 59 chr1 48693399 48693450 -233500214 + (CCCCG)n Simple_repeat Simple_repeat 5 53 0 360 217 0 0 chr1 48693456 48693548 -233500116 + C-rich Low_complexity Low_complexity 2 93 0 303 200 120 20 chr1 48695669 48695769 -233497895 + MIR3 SINE MIR 54 163 -45 545 189 119 55 chr1 48695855 48696056 -233497608 - MER2 DNA MER2_type 0 345 132 1997 146 9 67 chr1 48696062 48696404 -233497260 - MER1B DNA MER1_type -17 322 1 798 178 7 7 chr1 48696406 48696541 -233497123 - MER2 DNA MER2_type -207 138 4 202 264 240 8 chr1 48696854 48696979 -233496685 + MIR3 SINE MIR 21 174 -34 258 239 185 0 chr1 48697363 48697430 -233496234 + MIR3 SINE MIR 86 169 -39 271 346 132 19 chr1 48697430 48697589 -233496075 + MER5B DNA MER1_type 2 178 0 973 221 19 24 chr1 48698126 48698339 -233495325 + MER20 DNA MER1_type 7 218 -1 448 250 167 13 chr1 48698530 48698686 -233494978 + MIR SINE MIR 2 181 -81 1841 160 14 0 chr1 48699493 48699780 -233493884 - AluSx SINE Alu -17 295 5 424 275 99 21 chr1 48699872 48700014 -233493650 + MIR SINE MIR 40 192 -70 299 254 72 86 chr1 48700169 48700378 -233493286 - L2 LINE L2 -218 3054 2849 277 325 95 46 chr1 48700537 48700820 -233492844 - L2 LINE L2 -705 2609 2313 317 286 244 31 chr1 48701854 48702141 -233491523 - HAL1 LINE L1 -189 2318 1971 444 269 28 7 chr1 48702214 48702359 -233491305 - HAL1 LINE L1 -731 1776 1629 2412 97 10 0 chr1 48702480 48702789 -233490875 - AluSx SINE Alu 0 312 1 418 284 107 26 chr1 48703014 48703218 -233490446 + MIR SINE MIR 9 230 -32 1733 160 38 10 chr1 48704054 48704225 -233489439 - AluJo SINE Alu -16 296 112 378 0 0 0 chr1 48704225 48704267 -233489397 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1733 160 38 10 chr1 48704267 48704383 -233489281 - AluJo SINE Alu -200 112 1 1810 153 75 16 chr1 48704458 48704831 -233488833 + Tigger6a DNA MER2_type 22 416 -667 2553 39 0 0 chr1 48704831 48705117 -233488547 + AluY SINE Alu 5 290 -21 961 172 18 6 chr1 48705137 48705300 -233488364 + FRAM SINE Alu 1 161 -15 2338 191 56 82 chr1 48705308 48705848 -233487816 + Tigger6a DNA MER2_type 409 962 -635 2483 78 0 0 chr1 48705848 48706155 -233487509 - AluY SINE Alu -4 307 1 2096 62 4 0 chr1 48706165 48706424 -233487240 - AluY SINE Alu -3 308 49 2338 191 56 82 chr1 48706424 48706564 -233487100 + Tigger6a DNA MER2_type 971 1082 -1 2256 91 16 3 chr1 48706926 48707235 -233486429 - AluSq SINE Alu 0 313 1 23 33 0 0 chr1 48707958 48707988 -233485676 + AT_rich Low_complexity Low_complexity 1 30 0 2418 80 7 0 chr1 48708213 48708514 -233485150 - AluY SINE Alu -8 303 1 346 291 148 33 chr1 48709166 48709348 -233484316 - HAL1 LINE L1 -1920 587 385 348 268 0 0 chr1 48710140 48710211 -233483453 + L2 LINE L2 3243 3313 0 1893 189 15 57 chr1 48710958 48711418 -233482246 + MER31A LTR ERV1 2 442 -43 26 0 0 0 chr1 48711422 48711448 -233482216 + AT_rich Low_complexity Low_complexity 1 26 0 299 179 15 0 chr1 48711673 48711740 -233481924 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 40 37 0 0 chr1 48711750 48711804 -233481860 + AT_rich Low_complexity Low_complexity 1 54 0 65 14 0 0 chr1 48712273 48712345 -233481319 + AT_rich Low_complexity Low_complexity 1 72 0 2150 121 3 0 chr1 48712345 48712634 -233481030 - AluSx SINE Alu -22 290 1 221 315 112 11 chr1 48712645 48712734 -233480930 - MIR SINE MIR -67 141 44 853 192 83 10 chr1 48712762 48712955 -233480709 - MIR SINE MIR -21 241 35 724 275 195 19 chr1 48713287 48713698 -233479966 - L2 LINE L2 0 3313 2831 266 231 156 29 chr1 48713778 48713932 -233479732 + MIR SINE MIR 18 191 -60 516 262 278 0 chr1 48714644 48714831 -233478833 - MIR SINE MIR -7 255 17 41 0 0 0 chr1 48714918 48714959 -233478705 + AT_rich Low_complexity Low_complexity 1 41 0 224 276 106 112 chr1 48715293 48715389 -233478275 - L2 LINE L2 -18 3254 3158 962 228 15 10 chr1 48715389 48715595 -233478069 - MER3 DNA MER1_type -2 207 1 224 276 106 112 chr1 48715595 48715668 -233477996 - L2 LINE L2 -114 3158 3086 463 290 241 20 chr1 48715705 48716053 -233477611 - L2 LINE L2 -58 3255 2831 366 204 80 18 chr1 48716066 48716179 -233477485 - Charlie7 DNA MER1_type 0 2612 2493 21 57 0 0 chr1 48717595 48717630 -233476034 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 48718181 48718204 -233475460 + GC_rich Low_complexity Low_complexity 1 23 0 998 156 134 22 chr1 48718579 48718803 -233474861 - L1MB2 LINE L1 -2 6169 5921 2444 76 3 0 chr1 48718825 48719127 -233474537 + AluSx SINE Alu 2 304 -8 204 125 0 0 chr1 48719215 48719247 -233474417 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 331 304 140 8 chr1 48719302 48719552 -233474112 - L1M4 LINE L1 -825 5321 5039 877 224 58 4 chr1 48719555 48719796 -233473868 - Charlie5 DNA MER1_type 0 2624 2371 1231 269 49 21 chr1 48719832 48720301 -233473363 - L1M4 LINE L1 -1104 5042 4561 617 371 45 20 chr1 48722440 48722842 -233470822 + L2 LINE L2 120 531 -2783 1068 121 61 0 chr1 48722852 48723017 -233470647 + L1PA15 LINE L1 5987 6161 -4 224 250 35 21 chr1 48723027 48723171 -233470493 + (TA)n Simple_repeat Simple_repeat 1 146 0 279 0 0 0 chr1 48723663 48723694 -233469970 + (TG)n Simple_repeat Simple_repeat 2 32 0 5052 143 53 38 chr1 48723727 48724784 -233468880 - L1MA6 LINE L1 0 6300 5217 380 335 87 4 chr1 48724803 48725045 -233468619 + L2 LINE L2 772 1033 -2281 481 204 26 9 chr1 48725071 48725184 -233468480 - LTR13 LTR ERVK -141 866 752 22 0 0 0 chr1 48725441 48725463 -233468201 + AT_rich Low_complexity Low_complexity 1 22 0 2790 246 31 31 chr1 48725476 48726217 -233467447 + L1ME3A LINE L1 5198 5945 -225 4406 170 48 60 chr1 48726217 48727183 -233466481 - LTR13 LTR ERVK 0 954 1 2790 246 31 31 chr1 48727183 48727287 -233466377 + L1ME3A LINE L1 5945 6047 -123 514 268 134 29 chr1 48727705 48727914 -233465750 + MIR SINE MIR 32 262 0 363 276 0 0 chr1 48727929 48728016 -233465648 - MLT1I LTR MaLR -3 406 320 390 214 124 0 chr1 48728383 48728472 -233465192 - Charlie8 DNA MER1_type -2203 214 115 887 67 109 0 chr1 48728483 48728602 -233465062 - AluY SINE Alu -179 132 1 188 341 159 0 chr1 48728726 48728852 -233464812 - MIR3 SINE MIR -48 160 15 257 282 67 13 chr1 48729036 48729192 -233464472 - L1M4 LINE L1 -765 5381 5221 4110 111 0 7 chr1 48729600 48730158 -233463506 + MER41A LTR ERV1 1 554 0 1014 277 33 3 chr1 48730935 48731242 -233462422 + L1M4 LINE L1 2468 2783 -3363 1445 145 22 128 chr1 48731242 48731861 -233461803 - MER4C LTR ERV1 0 465 3 656 199 149 3 chr1 48731863 48732184 -233461480 + L1M4 LINE L1 2780 3192 -2954 3133 216 60 7 chr1 48732207 48732969 -233460695 + L1M4 LINE L1 3433 4235 -1911 477 264 126 56 chr1 48734664 48735200 -233458464 - L2 LINE L2 -93 3220 2640 267 279 44 29 chr1 48735705 48735841 -233457823 + (ATGGTG)n Simple_repeat Simple_repeat 1 138 0 * 323 280 34 17 chr1 48735759 48735934 -233457730 + (ATG)n Simple_repeat Simple_repeat 3 180 0 399 127 0 0 chr1 48736998 48737061 -233456603 + (TG)n Simple_repeat Simple_repeat 2 64 0 2201 55 4 0 chr1 48737081 48737141 -233456523 + L1P3 LINE L1 5338 5396 -758 2408 90 0 0 chr1 48737141 48737452 -233456212 + AluY SINE Alu 1 311 0 2201 55 4 0 chr1 48737452 48737712 -233455952 + L1P3 LINE L1 5396 5664 -490 1847 166 3 3 chr1 48737712 48738008 -233455656 + AluJb SINE Alu 17 312 0 921 256 68 37 chr1 48738012 48738299 -233455365 + L1ME2 LINE L1 989 1266 -5044 2390 146 18 83 chr1 48738299 48738384 -233455280 + LOR1b LTR ERV1 1 90 -371 2365 91 0 13 chr1 48738384 48738691 -233454973 - AluY SINE Alu -8 303 1 2390 146 18 83 chr1 48738691 48739098 -233454566 + LOR1b LTR ERV1 90 461 0 921 256 68 37 chr1 48739098 48739335 -233454329 + L1ME2 LINE L1 1266 1581 -4729 1915 141 7 3 chr1 48739381 48739665 -233453999 - AluJo SINE Alu -27 285 1 269 308 74 82 chr1 48739924 48740327 -233453337 + L1ME2 LINE L1 3365 3764 -2365 1049 144 6 52 chr1 48740364 48740538 -233453126 + FRAM SINE Alu 1 166 0 571 332 36 0 chr1 48740575 48740825 -233452839 + L1ME2 LINE L1 3962 4220 -1909 614 314 76 14 chr1 48740961 48741381 -233452283 + L1ME2 LINE L1 4781 5226 -903 609 287 92 18 chr1 48741603 48741875 -233451789 + HAL1 LINE L1 1745 2036 -471 400 274 42 37 chr1 48741907 48742124 -233451540 + L1ME2 LINE L1 5729 5946 -207 198 71 0 0 chr1 48742355 48742383 -233451281 + (CA)n Simple_repeat Simple_repeat 2 29 0 2029 125 9 67 chr1 48742917 48743062 -233450602 + MER44D DNA MER2_type 5 157 -2334 279 0 0 0 chr1 48743062 48743093 -233450571 + (TG)n Simple_repeat Simple_repeat 2 32 0 2171 101 7 0 chr1 48743096 48743382 -233450282 - AluSx SINE Alu -24 288 1 2029 125 9 67 chr1 48743382 48743576 -233450088 + MER44D DNA MER2_type 159 598 -11 333 234 255 14 chr1 48743605 48743746 -233449918 - MIR SINE MIR -46 216 42 2053 133 0 3 chr1 48743923 48744217 -233449447 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr1 48744333 48744357 -233449307 + (T)n Simple_repeat Simple_repeat 1 24 0 2899 192 32 16 chr1 48744731 48745352 -233448312 + L1MB3 LINE L1 4011 4641 -1505 24323 34 7 2 chr1 48745432 48751427 -233442237 + L1PA2 LINE L1 2 6154 -1 4503 164 28 22 chr1 48751421 48752036 -233441628 + L1MB3 LINE L1 4692 5302 -881 * 2131 134 3 0 chr1 48752036 48752335 -233441329 + AluSq SINE Alu 1 300 -13 4503 164 28 22 chr1 48752335 48753067 -233440597 + L1MB3 LINE L1 5302 6053 -130 1922 105 7 18 chr1 48753185 48753470 -233440194 + AluY SINE Alu 1 282 -29 491 208 117 8 chr1 48753552 48753715 -233439949 + FLAM_A SINE Alu 1 176 0 240 35 0 0 chr1 48753714 48753743 -233439921 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 1816 255 27 18 chr1 48753745 48754335 -233439329 + L1ME LINE L1 5218 5809 -353 2876 216 63 19 chr1 48754339 48754947 -233438717 + L1M4 LINE L1 4131 4784 -1362 2445 86 0 0 chr1 48754947 48755249 -233438415 + AluY SINE Alu 1 302 -9 2876 216 63 19 chr1 48755249 48755436 -233438228 + L1M4 LINE L1 4784 4961 -1185 2124 139 131 11 chr1 48755436 48755818 -233437846 + MSTA LTR MaLR 1 428 0 9098 154 12 42 chr1 48755819 48756354 -233437310 + MSTA-int LTR MaLR 3 553 -1027 2143 138 39 33 chr1 48756354 48756716 -233436948 - THE1B LTR MaLR 0 364 1 9098 154 12 42 chr1 48756716 48757807 -233435857 + MSTA-int LTR MaLR 553 1580 0 471 148 11 34 chr1 48757807 48757895 -233435769 + MSTA LTR MaLR 1 86 -342 2171 141 18 37 chr1 48757895 48758350 -233435314 + pTR5 LTR ERV1 753 1198 -1240 208 156 67 0 chr1 48758858 48758903 -233434761 - L2 LINE L2 0 3313 3266 2053 96 3 56 chr1 48759325 48759628 -233434036 + AluSx SINE Alu 3 289 -23 356 310 6 63 chr1 48760717 48760875 -233432789 - MIR3 SINE MIR -19 189 41 2326 99 0 0 chr1 48760959 48761253 -233432411 + AluSg SINE Alu 3 296 -14 290 303 49 27 chr1 48763088 48763273 -233430391 + MIR SINE MIR 60 248 -14 2340 61 3 20 chr1 48763302 48763599 -233430065 + AluY SINE Alu 1 292 -19 534 326 69 37 chr1 48764035 48764412 -233429252 - L2 LINE L2 -1 3271 2883 222 91 0 0 chr1 48765899 48765932 -233427732 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 208 263 0 0 chr1 48766670 48766727 -233426937 - L2 LINE L2 -2 3311 3255 2356 123 48 6 chr1 48766894 48767252 -233426412 - LTR57 LTR ERVL -38 373 1 2418 153 30 17 chr1 48767391 48767599 -233426065 - MSTB LTR MaLR -15 411 207 2243 69 0 4 chr1 48767599 48767873 -233425791 - AluY SINE Alu -38 273 1 2418 153 30 17 chr1 48767873 48768068 -233425596 - MSTB LTR MaLR -219 207 3 276 183 97 54 chr1 48768413 48768506 -233425158 + MER5A DNA MER1_type 9 105 -84 359 288 109 73 chr1 48768738 48769179 -233424485 + L2 LINE L2 2804 3260 -12 300 70 0 0 chr1 48769180 48769223 -233424441 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 719 148 70 0 chr1 48769549 48769691 -233423973 + MIR SINE MIR 3 154 -108 27 0 0 0 chr1 48769725 48769752 -233423912 + AT_rich Low_complexity Low_complexity 1 27 0 836 208 82 3 chr1 48770419 48770671 -233422993 - MER46C DNA MER2_type 0 338 1 328 235 57 0 chr1 48771195 48771319 -233422345 + L1MD3 LINE L1 6256 6357 -2 2453 84 0 3 chr1 48771495 48771804 -233421860 + AluSc SINE Alu 1 308 -1 1835 133 6 60 chr1 48771900 48772217 -233421447 + AluJo SINE Alu 1 300 -12 602 219 81 0 chr1 48772601 48772724 -233420940 + HAL1 LINE L1 246 378 -2129 425 248 33 33 chr1 48772719 48772872 -233420792 + HAL1 LINE L1 1342 1494 -1013 * 3646 198 46 7 chr1 48772871 48773690 -233419974 + L1MC4a LINE L1 4292 5142 -1004 524 99 0 0 chr1 48773712 48773783 -233419881 - LOR1-int LTR ERV1 -5792 2328 2258 * 2256 118 80 3 chr1 48773779 48774153 -233419511 - LOR1-int LTR ERV1 -4814 3306 2904 * 3812 144 47 27 chr1 48774147 48774854 -233418810 - LOR1-int LTR ERV1 -5436 2684 1964 2371 75 0 45 chr1 48774854 48775162 -233418502 + AluY SINE Alu 1 294 -17 482 135 38 44 chr1 48775312 48775466 -233418198 + MER47B DNA MER2_type 174 414 -4 754 276 44 9 chr1 48776750 48776978 -233416686 - MIR SINE MIR -26 236 1 261 0 0 0 chr1 48777049 48777078 -233416586 + (T)n Simple_repeat Simple_repeat 1 29 0 1711 122 72 47 chr1 48777880 48778005 -233415659 + AluSx SINE Alu 13 133 -179 1856 110 0 0 chr1 48778005 48778250 -233415414 + AluSg SINE Alu 60 304 -6 1711 122 72 47 chr1 48778250 48778402 -233415262 + AluSx SINE Alu 133 297 -15 993 190 0 0 chr1 48778402 48778565 -233415099 + AluJb SINE Alu 134 296 -16 2544 63 0 0 chr1 48778639 48778941 -233414723 + AluY SINE Alu 1 302 -9 3935 231 44 38 chr1 48778995 48779675 -233413989 - L1MEc LINE L1 -2917 3298 2623 2313 105 0 3 chr1 48779675 48779979 -233413685 + AluSp SINE Alu 1 303 -10 2332 93 0 13 chr1 48779979 48780290 -233413374 + AluSp SINE Alu 1 308 -5 3935 231 44 38 chr1 48780290 48781213 -233412451 - L1MEc LINE L1 -3591 2624 1730 2282 267 51 28 chr1 48781218 48782261 -233411403 - L1M4c LINE L1 -4434 2129 913 484 282 76 82 chr1 48782295 48782579 -233411085 + L1MC4a LINE L1 5410 5691 -2117 2411 82 3 7 chr1 48782579 48782885 -233410779 + AluSc SINE Alu 1 305 -4 484 282 76 82 chr1 48782885 48783089 -233410575 + L1MC4a LINE L1 5691 5895 -1913 609 321 0 9 chr1 48783316 48783537 -233410127 - L2 LINE L2 -1910 1404 1186 695 111 0 0 chr1 48783756 48783846 -233409818 + 5S rRNA rRNA 1 90 -31 962 232 34 54 chr1 48784092 48784412 -233409252 + L1ME4a LINE L1 5521 5837 -284 2311 69 0 14 chr1 48784412 48784730 -233408934 + AluY SINE Alu 1 314 0 962 232 34 54 chr1 48784730 48784761 -233408903 + L1ME4a LINE L1 5837 5867 -254 240 283 22 33 chr1 48786885 48786977 -233406687 - L2 LINE L2 -41 3231 3141 351 303 123 18 chr1 48787317 48787545 -233406119 - L2 LINE L2 -473 2841 2590 6575 125 80 16 chr1 48787718 48787783 -233405881 - LOR1b-int LTR ERV1 -6720 1400 1341 2310 86 0 46 chr1 48787783 48788108 -233405556 - AluSx SINE Alu -2 310 1 6575 125 80 16 chr1 48788108 48789168 -233404496 - LOR1b-int LTR ERV1 -6779 1341 203 2021 122 93 15 chr1 48789178 48789521 -233404143 - LOR1b-int LTR ERV1 -7749 371 2 1900 174 115 14 chr1 48789522 48789941 -233403723 - LOR1b LTR ERV1 0 461 1 1410 217 90 43 chr1 48789941 48790430 -233403234 + HAL1 LINE L1 1996 2507 0 1670 270 79 67 chr1 48790586 48791463 -233402201 + L1MEd LINE L1 367 1253 -4866 244 261 62 31 chr1 48792194 48792259 -233401405 + L2 LINE L2 3192 3258 -14 2059 75 86 0 chr1 48792972 48793239 -233400425 - AluY SINE Alu -21 290 1 1156 110 0 0 chr1 48793239 48793384 -233400280 - AluSq/x SINE Alu -168 145 1 449 325 10 10 chr1 48794535 48794741 -233398923 + L2 LINE L2 2853 3058 -214 219 282 58 10 chr1 48794846 48794949 -233398715 - L2 LINE L2 -656 2658 2551 1908 177 147 2 chr1 48796635 48797037 -233396627 - LOR1b LTR ERV1 0 461 2 350 148 0 0 chr1 48797038 48797092 -233396572 - LOR1b-int LTR ERV1 0 8120 8067 5101 172 59 10 chr1 48847092 48847173 -233346491 - L1MB7 LINE L1 -241 5943 5867 1633 205 0 0 chr1 48847173 48847470 -233346194 - AluJb SINE Alu -15 297 1 5101 172 59 10 chr1 48847470 48849001 -233344663 - L1MB7 LINE L1 -317 5867 4257 891 119 37 0 chr1 48849001 48849135 -233344529 - MSTA LTR MaLR 0 428 290 392 262 0 19 chr1 48849240 48849347 -233344317 - L1M4b LINE L1 -5550 1309 1205 251 211 39 0 chr1 48849567 48849619 -233344045 - L1M4b LINE L1 -5636 1223 1170 2852 249 44 73 chr1 48849859 48850730 -233342934 - L1M4b LINE L1 -5903 956 114 1299 193 91 4 chr1 48850730 48851005 -233342659 - AluJb SINE Alu -13 299 1 2852 249 44 73 chr1 48851005 48851107 -233342557 - L1M4b LINE L1 -6745 114 11 260 140 20 0 chr1 48851112 48851162 -233342502 + L1MD3 LINE L1 7926 7976 -19 1510 161 106 17 chr1 48852057 48852349 -233341315 + MER7A DNA MER2_type 31 346 0 233 290 110 10 chr1 48852679 48852779 -233340885 + L2 LINE L2 3191 3300 -13 6451 40 8 0 chr1 48852784 48853543 -233340121 + L1PA5 LINE L1 5382 6146 -8 624 227 22 67 chr1 48853676 48853911 -233339753 + L1ME4a LINE L1 5611 5836 -285 2181 69 0 14 chr1 48853911 48854229 -233339435 + AluY SINE Alu 1 314 0 624 227 22 67 chr1 48854229 48854260 -233339404 + L1ME4a LINE L1 5836 5867 -254 594 298 123 53 chr1 48856384 48857049 -233336615 - L2 LINE L2 -41 3231 2520 1842 163 0 7 chr1 48857050 48857357 -233336307 + AluJo SINE Alu 8 312 0 2071 114 0 13 chr1 48858392 48858691 -233334973 - AluSg SINE Alu -15 295 1 4330 92 43 40 chr1 48858692 48859473 -233334191 - LOR1-int LTR ERV1 -6005 2115 1332 2194 97 10 6 chr1 48859495 48859806 -233333858 - AluSx SINE Alu 0 312 1 27 49 0 0 chr1 48859866 48859907 -233333757 + AT_rich Low_complexity Low_complexity 1 41 0 326 253 13 0 chr1 48859934 48860013 -233333651 + L1M4 LINE L1 3718 3797 -2349 371 159 0 0 chr1 48860014 48860077 -233333587 + L1M4 LINE L1 5228 5290 -856 180 0 0 0 chr1 48860083 48860103 -233333561 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 241 208 21 0 chr1 48860868 48860916 -233332748 + L2 LINE L2 3250 3298 -15 529 314 63 0 chr1 48860934 48861109 -233332555 - MIR SINE MIR -70 192 7 303 248 119 46 chr1 48861296 48861405 -233332259 - L2 LINE L2 -20 3252 3136 186 316 109 71 chr1 48861964 48862258 -233331406 - L2 LINE L2 -19 3253 2949 373 270 32 16 chr1 48862574 48862700 -233330964 - L2 LINE L2 -6 3307 3180 254 301 96 59 chr1 48862688 48863043 -233330621 + L2 LINE L2 2449 2816 -498 * 2035 118 3 25 chr1 48863456 48863771 -233329893 + AluJo SINE Alu 1 308 -4 684 284 38 50 chr1 48863971 48864288 -233329376 - L2 LINE L2 -2 3311 2999 1629 135 85 0 chr1 48864832 48865123 -233328541 + AluSx SINE Alu 1 313 0 285 207 36 54 chr1 48865236 48865347 -233328317 + L1ME4a LINE L1 5982 6090 -31 1426 209 4 0 chr1 48865582 48865859 -233327805 + AluJb SINE Alu 3 280 -32 264 319 0 0 chr1 48866004 48866073 -233327591 - L2 LINE L2 0 3272 3204 193 250 0 0 chr1 48866372 48866416 -233327248 + MIR SINE MIR 212 255 -7 1967 244 51 95 chr1 48866821 48868572 -233325092 - L1M4 LINE L1 -3811 2571 913 390 315 13 55 chr1 48868605 48868840 -233324824 + L1ME LINE L1 5412 5636 -528 271 319 69 9 chr1 48869005 48869121 -233324543 + MIR SINE MIR 32 154 -108 336 300 174 16 chr1 48869649 48869839 -233323825 - L2 LINE L2 -3 3310 3091 413 305 71 9 chr1 48871632 48871842 -233321822 - MIR SINE MIR -6 256 34 377 243 159 9 chr1 48872120 48872227 -233321437 + MIR SINE MIR 70 192 -70 351 0 0 0 chr1 48872288 48872327 -233321337 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1033 229 28 0 chr1 48872534 48872752 -233320912 - MER58A DNA MER1_type 0 224 1 1757 226 79 56 chr1 48873074 48873127 -233320537 - MLT1G LTR MaLR 0 590 540 2140 106 3 0 chr1 48873127 48873419 -233320245 + AluSx SINE Alu 1 293 -19 1757 226 79 56 chr1 48873419 48873973 -233319691 - MLT1G LTR MaLR -50 540 12 230 296 178 15 chr1 48874766 48874901 -233318763 - L2 LINE L2 -518 2796 2640 1207 249 198 9 chr1 48875030 48875657 -233318007 + L2 LINE L2 2346 3106 -207 1648 194 33 42 chr1 48875963 48876324 -233317340 - MLT1A1 LTR MaLR -7 358 1 1018 190 10 25 chr1 48876944 48877144 -233316520 - MER20 DNA MER1_type 0 219 23 489 258 76 76 chr1 48877488 48877940 -233315724 + L2 LINE L2 2540 3009 -263 225 236 55 0 chr1 48878343 48878398 -233315266 - L2 LINE L2 0 3272 3215 1908 95 3 65 chr1 48878810 48879116 -233314548 + AluSx SINE Alu 3 289 -23 395 321 6 62 chr1 48880201 48880363 -233313301 - MIR3 SINE MIR -15 193 41 2182 99 0 0 chr1 48880447 48880739 -233312925 + AluSg SINE Alu 3 294 -16 366 306 49 25 chr1 48883637 48883834 -233309830 + MIR SINE MIR 46 248 -14 180 0 0 0 chr1 48883834 48883854 -233309810 + (A)n Simple_repeat Simple_repeat 1 20 0 2200 61 3 20 chr1 48883864 48884160 -233309504 + AluY SINE Alu 1 291 -20 642 325 85 35 chr1 48884596 48884996 -233308668 - L2 LINE L2 -1 3271 2852 222 91 0 0 chr1 48886460 48886493 -233307171 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 235 263 0 0 chr1 48887168 48887225 -233306439 - L2 LINE L2 -2 3311 3255 2394 120 48 6 chr1 48887392 48887750 -233305914 - LTR57 LTR ERVL -38 373 1 2431 153 30 17 chr1 48887889 48888097 -233305567 - MSTB LTR MaLR -15 411 207 2156 70 0 0 chr1 48888097 48888370 -233305294 - AluY SINE Alu -38 273 1 2431 153 30 17 chr1 48888370 48888565 -233305099 - MSTB LTR MaLR -219 207 3 320 185 109 54 chr1 48888910 48889002 -233304662 + MER5A DNA MER1_type 9 105 -84 495 293 104 68 chr1 48889234 48889675 -233303989 + L2 LINE L2 2804 3260 -12 336 64 0 0 chr1 48889676 48889723 -233303941 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 789 173 76 46 chr1 48889916 48890113 -233303551 + MIR SINE MIR 3 205 -57 839 208 82 3 chr1 48890787 48891039 -233302625 - MER46C DNA MER2_type 0 338 1 327 235 57 0 chr1 48891563 48891687 -233301977 + L1MD3 LINE L1 6256 6357 -2 2323 84 0 3 chr1 48891863 48892172 -233301492 + AluSc SINE Alu 1 308 -1 1805 130 3 57 chr1 48892268 48892583 -233301081 + AluJo SINE Alu 1 298 -14 236 271 9 28 chr1 48892690 48892797 -233300867 - L1MC5 LINE L1 -60 7901 7797 680 208 87 0 chr1 48892806 48892955 -233300709 + HAL1 LINE L1 217 378 -2129 420 248 33 33 chr1 48892950 48893103 -233300561 + HAL1 LINE L1 1342 1494 -1013 * 3604 198 46 7 chr1 48893102 48893921 -233299743 + L1M4 LINE L1 4292 5142 -1004 521 99 0 0 chr1 48893943 48894014 -233299650 - LOR1-int LTR ERV1 -5792 2328 2258 * 2231 118 80 3 chr1 48894010 48894384 -233299280 - LOR1-int LTR ERV1 -4814 3306 2904 * 4257 135 63 44 chr1 48894353 48895085 -233298579 - LOR1-int LTR ERV1 -5415 2705 1952 2290 76 0 44 chr1 48895085 48895401 -233298263 + AluY SINE Alu 1 302 -9 4257 135 63 44 chr1 48895401 48895551 -233298113 - LOR1-int LTR ERV1 -6168 1952 1806 184 301 127 53 chr1 48895662 48895961 -233297703 - L2 LINE L2 -2293 1021 701 1046 191 43 19 chr1 48895967 48896176 -233297488 - MER58A DNA MER1_type -4 220 7 474 180 391 0 chr1 48896195 48896323 -233297341 + MER5A DNA MER1_type 6 183 -6 185 327 100 13 chr1 48896356 48896506 -233297158 - L2 LINE L2 -2660 654 492 259 278 37 37 chr1 48900258 48900485 -233293179 + (GTGTG)n Simple_repeat Simple_repeat 1 227 0 229 309 59 0 chr1 48905648 48905716 -233287948 + L2 LINE L2 3182 3253 -60 236 276 17 0 chr1 48905853 48905911 -233287753 + L2 LINE L2 2219 2277 -1037 443 149 0 6 chr1 48906111 48906365 -233287299 + AluJb SINE Alu 16 312 0 198 356 165 0 chr1 48908969 48909084 -233284580 + MIR SINE MIR 59 192 -70 2028 117 10 0 chr1 48910382 48910673 -233282991 + AluSx SINE Alu 1 294 -18 774 223 102 0 chr1 48910676 48910873 -233282791 - MIR SINE MIR -1 261 45 355 318 107 40 chr1 48911620 48911872 -233281792 - L2 LINE L2 -46 3267 2999 490 317 64 25 chr1 48912310 48912670 -233280994 - L2 LINE L2 -1330 1984 1611 551 326 39 9 chr1 48915239 48915472 -233278192 - MIR SINE MIR -6 256 17 805 200 53 24 chr1 48917600 48917770 -233275894 + FAM SINE Alu 1 175 0 429 278 192 0 chr1 48917837 48918035 -233275629 - MIR SINE MIR -25 237 2 23 0 0 0 chr1 48919220 48919243 -233274421 + GC_rich Low_complexity Low_complexity 1 23 0 1294 137 10 5 chr1 48921265 48921469 -233272195 - AluSx SINE Alu -107 205 1 225 235 276 0 chr1 48922778 48922876 -233270788 + MIR SINE MIR 20 144 -64 477 242 185 0 chr1 48926130 48926287 -233267377 + MER5A DNA MER1_type 4 189 0 292 267 38 9 chr1 48927999 48928104 -233265560 + MIR SINE MIR 44 151 -57 190 342 201 0 chr1 48929996 48930145 -233263519 + L2 LINE L2 2902 3080 -192 231 296 26 26 chr1 48931307 48931422 -233262242 - L1ME4a LINE L1 -180 5941 5827 314 262 126 0 chr1 48932103 48932206 -233261458 - L1ME4a LINE L1 -470 5651 5536 889 266 100 19 chr1 48933170 48933539 -233260125 + L1ME3A LINE L1 5398 5796 -366 398 223 10 0 chr1 48933662 48933765 -233259899 + L1ME3A LINE L1 5848 5951 -219 1804 132 11 7 chr1 48934254 48934569 -233259095 + AluJb SINE Alu 11 326 0 6140 196 17 3 chr1 48934569 48935881 -233257783 + L1PB1 LINE L1 3235 4564 -1582 2009 106 0 0 chr1 48935882 48936156 -233257508 + AluSx SINE Alu 1 274 -38 3649 138 15 1 chr1 48936158 48937104 -233256560 + L1PB1 LINE L1 4838 5793 -358 270 237 13 0 chr1 48937107 48937183 -233256481 + L1ME3A LINE L1 5875 5951 -219 326 157 12 0 chr1 48937275 48937358 -233256306 + (TA)n Simple_repeat Simple_repeat 1 84 0 2036 141 83 3 chr1 48937374 48937722 -233255942 + L1PB1 LINE L1 5776 6151 0 2112 121 7 0 chr1 48937734 48938039 -233255625 + AluSx SINE Alu 1 307 -5 1665 245 86 19 chr1 48938087 48938303 -233255361 + MLT1F1 LTR MaLR 69 269 -298 1024 198 77 135 chr1 48938303 48938717 -233254947 + MLT1B LTR MaLR 1 390 0 1665 245 86 19 chr1 48938717 48938966 -233254698 + MLT1F1 LTR MaLR 269 565 -2 270 279 0 0 chr1 48939068 48939129 -233254535 + MLT1K LTR MaLR 180 240 -348 2594 49 0 0 chr1 48939340 48939648 -233254016 - AluY SINE Alu -3 308 1 21 0 0 0 chr1 48939832 48939853 -233253811 + AT_rich Low_complexity Low_complexity 1 21 0 662 332 82 28 chr1 48940985 48941053 -233252611 - L1MC4a LINE L1 -350 5771 5708 2204 117 0 0 chr1 48941053 48941361 -233252303 + AluSx SINE Alu 1 308 -4 662 332 82 28 chr1 48941361 48941816 -233251848 - L1MC4a LINE L1 -413 5708 5357 1631 167 66 3 chr1 48941889 48942177 -233251487 - AluJo SINE Alu -6 306 1 555 243 21 14 chr1 48942692 48942836 -233250828 - LTR33 LTR ERVL 0 521 377 738 279 72 11 chr1 48942886 48943148 -233250516 - LTR33 LTR ERVL -243 278 1 3217 176 43 16 chr1 48943350 48943958 -233249706 + MLT1E3 LTR MaLR 1 624 0 1650 171 7 7 chr1 48943970 48944256 -233249408 + AluJb SINE Alu 18 303 -9 901 313 91 15 chr1 48944299 48944963 -233248701 - ERVL LTR ERVL -383 5381 4611 7624 174 115 42 chr1 48944968 48946603 -233247061 - MER52A LTR ERV1 0 1755 1 867 309 20 0 chr1 48946615 48946861 -233246803 - ERVL LTR ERVL -1167 4597 4347 2854 323 72 31 chr1 48946947 48948389 -233245275 - ERVL LTR ERVL -2769 2924 1368 199 216 0 0 chr1 48948491 48948528 -233245136 + MER5A DNA MER1_type 153 189 0 312 237 93 21 chr1 48948591 48948688 -233244976 - MER5A DNA MER1_type -77 112 9 1105 168 0 0 chr1 48948766 48948945 -233244719 - MER5A DNA MER1_type -4 185 7 251 376 35 21 chr1 48949074 48949215 -233244449 - ERVL LTR ERVL -4857 907 765 765 271 69 32 chr1 48949827 48950104 -233243560 - LTR33 LTR ERVL 0 521 235 483 200 37 58 chr1 48950368 48950558 -233243106 - L1MEd LINE L1 -4164 2146 1961 423 161 18 71 chr1 48950564 48950676 -233242988 + L1MC3 LINE L1 6543 6648 -1137 241 245 32 43 chr1 48950617 48950711 -233242953 - L1MC4 LINE L1 -1336 6706 6614 * 3939 145 135 122 chr1 48950692 48951156 -233242508 + L1MC3 LINE L1 6600 7056 -729 286 261 0 33 chr1 48951156 48951248 -233242416 + MLT1F1 LTR MaLR 35 123 -444 3939 145 135 122 chr1 48951248 48951861 -233241803 + L1MC3 LINE L1 7056 7784 -1 2320 111 0 0 chr1 48951999 48952306 -233241358 - AluSx SINE Alu -5 307 1 212 245 0 43 chr1 48952367 48952461 -233241203 + (TA)n Simple_repeat Simple_repeat 2 91 0 2073 139 7 0 chr1 48952481 48952782 -233240882 + AluJb SINE Alu 1 303 -9 591 277 73 19 chr1 48952986 48953192 -233240472 + LTR33 LTR ERVL 305 521 0 529 218 192 13 chr1 48953806 48953962 -233239702 + MER63A DNA MER1_type 27 210 0 2929 201 44 16 chr1 48953999 48954728 -233238936 - L1ME1 LINE L1 0 6178 5405 1825 176 3 7 chr1 48954837 48955144 -233238520 - AluJb SINE Alu -6 306 1 1280 184 144 0 chr1 48955415 48955519 -233238145 + AluJb SINE Alu 1 89 -223 189 0 0 0 chr1 48955519 48955540 -233238124 + (CA)n Simple_repeat Simple_repeat 2 22 0 1280 184 144 0 chr1 48955540 48955685 -233237979 + AluJb SINE Alu 89 286 -26 189 107 0 0 chr1 48955686 48955714 -233237950 + (TA)n Simple_repeat Simple_repeat 1 28 0 2220 127 0 6 chr1 48955947 48956261 -233237403 - AluSx SINE Alu 0 312 1 631 208 106 48 chr1 48956266 48956656 -233237008 - L1MEd LINE L1 -4840 1470 1010 332 280 52 71 chr1 48956791 48957002 -233236662 - L1MEd LINE L1 -5311 808 602 2008 138 6 31 chr1 48957009 48957355 -233236309 - AluSx SINE Alu 0 338 1 343 318 122 33 chr1 48957481 48957843 -233235821 - L1MEd LINE L1 -5683 436 43 1551 149 86 19 chr1 48958162 48958453 -233235211 + AluJb SINE Alu 1 312 0 2229 122 7 3 chr1 48959099 48959402 -233234262 - AluSx SINE Alu -8 304 1 1417 272 15 54 chr1 48959402 48959620 -233234044 - L1MEc LINE L1 -4562 2263 2038 1765 178 0 7 chr1 48959620 48959912 -233233752 + AluJb SINE Alu 1 290 -22 1417 272 15 54 chr1 48959912 48959928 -233233736 - L1MEc LINE L1 -4787 2038 2023 2485 53 0 0 chr1 48959928 48960254 -233233410 + AluY SINE Alu 1 326 0 1417 272 15 54 chr1 48960254 48960582 -233233082 - L1MEc LINE L1 -4802 2023 1571 1724 97 0 4 chr1 48960593 48960819 -233232845 + AluSg1 SINE Alu 1 225 -84 800 174 0 0 chr1 48960843 48960975 -233232689 - FLAM_C SINE Alu -11 132 1 2094 135 10 0 chr1 48960981 48961284 -233232380 - AluSx SINE Alu -6 306 1 339 266 22 106 chr1 48961310 48961536 -233232128 - L1MEc LINE L1 -5103 1722 1516 10223 184 30 82 chr1 48961542 48962091 -233231573 - L1MB7 LINE L1 -16 6666 6090 1740 161 68 0 chr1 48962091 48962263 -233231401 - AluJo SINE Alu -3 309 109 216 0 0 0 chr1 48962263 48962287 -233231377 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1740 161 68 0 chr1 48962287 48962394 -233231270 - AluJo SINE Alu -203 109 11 10223 184 30 82 chr1 48962394 48962700 -233230964 - L1MB7 LINE L1 -592 6090 5770 1470 222 0 29 chr1 48962700 48963006 -233230658 - AluJb SINE Alu -15 297 1 10223 184 30 82 chr1 48963006 48963338 -233230326 - L1MB7 LINE L1 -912 5770 5422 845 141 0 0 chr1 48963338 48963466 -233230198 + FLAM_C SINE Alu 5 132 -1 10223 184 30 82 chr1 48963466 48964014 -233229650 - L1MB7 LINE L1 -1260 5422 4847 2704 106 3 5 chr1 48964014 48964390 -233229274 - THE1C LTR MaLR 0 375 1 10223 184 30 82 chr1 48964390 48964528 -233229136 - L1MB7 LINE L1 -1835 4847 4703 1887 159 10 7 chr1 48964528 48964823 -233228841 + AluSx SINE Alu 1 296 -16 10223 184 30 82 chr1 48964823 48965920 -233227744 - L1MB7 LINE L1 -1979 4703 3551 2207 101 42 0 chr1 48965920 48966208 -233227456 - AluSc SINE Alu -9 300 1 10223 184 30 82 chr1 48966208 48966643 -233227021 - L1MB7 LINE L1 -3131 3551 3095 2309 120 0 0 chr1 48966643 48966952 -233226712 - AluY SINE Alu -2 309 1 10223 184 30 82 chr1 48966952 48967031 -233226633 - L1MB7 LINE L1 -3587 3095 3013 602 244 0 0 chr1 48967031 48967158 -233226506 - FLAM_A SINE Alu -6 127 1 10223 184 30 82 chr1 48967158 48967629 -233226035 - L1MB7 LINE L1 -3669 3013 2519 1685 190 11 3 chr1 48967629 48967913 -233225751 + AluSx SINE Alu 1 286 -26 10223 184 30 82 chr1 48967913 48968421 -233225243 - L1MB7 LINE L1 -4163 2519 1986 279 54 0 0 chr1 48968421 48968458 -233225206 + (TG)n Simple_repeat Simple_repeat 2 38 0 10223 184 30 82 chr1 48968458 48968470 -233225194 - L1MB7 LINE L1 -4696 1986 1975 2106 137 3 0 chr1 48968470 48968770 -233224894 - AluSg SINE Alu -9 301 1 10223 184 30 82 chr1 48968770 48969049 -233224615 - L1MB7 LINE L1 -4707 1975 1683 351 0 0 0 chr1 48969049 48969088 -233224576 + (TG)n Simple_repeat Simple_repeat 2 40 0 10223 184 30 82 chr1 48969088 48969118 -233224546 - L1MB7 LINE L1 -4999 1683 494 33 0 0 0 chr1 48969221 48969254 -233224410 + GC_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr1 48969399 48969419 -233224245 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 612 200 0 0 chr1 48969435 48969540 -233224124 - FLAM_A SINE Alu -36 106 2 2441 168 7 21 chr1 48969548 48969983 -233223681 - LTR3 LTR ERVK 0 429 1 1450 167 133 4 chr1 48970044 48970307 -233223357 - AluJo SINE Alu -5 297 1 366 138 18 128 chr1 48970317 48970426 -233223238 - L1MB8 LINE L1 0 6178 6082 * 552 252 121 59 chr1 48970425 48970783 -233222881 - L1MEc LINE L1 -5220 1759 1312 798 286 47 80 chr1 48970902 48971316 -233222348 - L1MEc LINE L1 -5550 1397 1002 267 31 0 0 chr1 48971316 48971348 -233222316 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 798 286 47 80 chr1 48971348 48971460 -233222204 - L1MEc LINE L1 -5945 1002 888 21 36 0 0 chr1 48971592 48971620 -233222044 + AT_rich Low_complexity Low_complexity 1 28 0 754 265 115 47 chr1 48971795 48972292 -233221372 - L2 LINE L2 0 3313 2786 738 260 113 27 chr1 48972949 48973422 -233220242 - L1MC/D LINE L1 -330 5791 5260 364 228 54 11 chr1 48973637 48973729 -233219935 - MIR SINE MIR -150 112 17 292 229 0 14 chr1 48974254 48974324 -233219340 + MLT1K LTR MaLR 517 585 -3 1017 111 49 31 chr1 48976643 48976805 -233216859 + AluSg/x SINE Alu 126 290 -22 255 21 21 64 chr1 48976808 48976855 -233216809 - L1MA1 LINE L1 0 6305 6259 1175 92 0 0 chr1 48976955 48977097 -233216567 - AluSq/x SINE Alu -165 147 6 6614 89 11 35 chr1 48977101 48977690 -233215974 - L1MA3 LINE L1 -112 6193 5591 180 0 0 0 chr1 48977690 48977710 -233215954 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1964 106 68 0 chr1 48977713 48977978 -233215686 - AluSg SINE Alu -27 283 1 6614 89 11 35 chr1 48977978 48978512 -233215152 - L1MA3 LINE L1 -716 5589 5082 1614 172 38 0 chr1 48978512 48978779 -233214885 + AluJo SINE Alu 1 277 -35 2436 91 0 3 chr1 48979021 48979328 -233214336 + AluSg SINE Alu 2 307 -3 5775 125 30 15 chr1 48980430 48980519 -233213145 - L1MA3 LINE L1 -1053 5093 5007 2376 87 0 13 chr1 48980519 48980828 -233212836 - AluSg SINE Alu -5 305 1 5775 125 30 15 chr1 48980828 48981691 -233211973 - L1MA3 LINE L1 -1139 5007 4126 484 227 61 56 chr1 48982332 48982530 -233211134 + L1ME4a LINE L1 5691 5889 -232 1850 169 3 17 chr1 48982533 48982834 -233210830 + AluJo SINE Alu 1 297 -15 2491 76 0 0 chr1 48982967 48983271 -233210393 + AluY SINE Alu 1 304 -7 316 174 116 12 chr1 48983325 48983411 -233210253 + L1ME4a LINE L1 6006 6100 -21 704 207 0 0 chr1 48983426 48983547 -233210117 - FLAM_A SINE Alu -16 126 6 1831 157 7 46 chr1 48983571 48983877 -233209787 - AluSx SINE Alu -18 294 1 838 226 88 8 chr1 48984175 48984414 -233209250 - MIR SINE MIR -2 260 3 370 305 34 111 chr1 48984602 48984701 -233208963 + L2 LINE L2 2935 3040 -232 2082 129 0 32 chr1 48984701 48985011 -233208653 + AluSx SINE Alu 1 300 -12 370 305 34 111 chr1 48985011 48985262 -233208402 + L2 LINE L2 3040 3258 -14 2119 103 45 0 chr1 48985789 48985909 -233207755 + AluSq SINE Alu 3 116 -197 198 0 0 0 chr1 48985909 48985931 -233207733 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2119 103 45 0 chr1 48985931 48986100 -233207564 + AluSq SINE Alu 116 305 -8 1782 164 11 0 chr1 48986896 48987171 -233206493 - AluJb SINE Alu -34 278 1 21 0 0 0 chr1 48987639 48987660 -233206004 + AT_rich Low_complexity Low_complexity 1 21 0 234 323 71 10 chr1 48988180 48988279 -233205385 + L2 LINE L2 3140 3244 -28 2505 69 3 19 chr1 48989313 48989630 -233204034 + AluSx SINE Alu 1 312 0 650 305 20 12 chr1 48989639 48989874 -233203790 + MIR SINE MIR 12 251 -11 1743 178 3 10 chr1 48989874 48990167 -233203497 + AluJb SINE Alu 1 291 -21 2425 84 0 0 chr1 48990210 48990509 -233203155 - AluSq SINE Alu -14 299 1 1841 177 3 7 chr1 48990859 48991169 -233202495 + AluJb SINE Alu 1 309 -3 2454 58 31 0 chr1 48991338 48991632 -233202032 + AluY SINE Alu 1 303 -8 2331 103 0 0 chr1 48991999 48992299 -233201365 - AluSg SINE Alu -10 300 1 334 235 37 12 chr1 48992712 48992793 -233200871 + L2 LINE L2 3190 3272 0 294 262 29 91 chr1 48993223 48993270 -233200394 + L2 LINE L2 3117 3165 -148 2038 120 0 42 chr1 48993270 48993578 -233200086 + AluSx SINE Alu 1 295 -17 294 262 29 91 chr1 48993578 48993651 -233200013 + L2 LINE L2 3165 3221 -92 2048 134 20 0 chr1 48993651 48993949 -233199715 - AluSx SINE Alu -8 304 1 294 262 29 91 chr1 48993949 48994037 -233199627 + L2 LINE L2 3221 3313 0 619 322 57 37 chr1 48994676 48994974 -233198690 - L3 LINE CR1 -217 1360 1057 183 325 124 4 chr1 48995010 48995244 -233198420 - L3 LINE CR1 -659 918 657 390 252 53 58 chr1 48995273 48995479 -233198185 - L2 LINE L2 0 3313 3109 1800 168 0 11 chr1 48995498 48995784 -233197880 + AluJb SINE Alu 1 283 -29 2436 89 3 3 chr1 48996189 48996502 -233197162 - AluSp SINE Alu 0 313 1 345 232 48 56 chr1 48996601 48996726 -233196938 + MER5A DNA MER1_type 3 126 -63 1250 115 0 0 chr1 48996727 48996892 -233196772 + AluSg/x SINE Alu 136 300 -10 294 250 42 0 chr1 48996897 48996969 -233196695 + MER5A DNA MER1_type 115 189 0 467 296 44 0 chr1 48997061 48997233 -233196431 + MIR SINE MIR 10 188 -62 485 331 23 6 chr1 48997600 48997775 -233195889 + MIR SINE MIR 14 191 -71 317 299 91 19 chr1 48997840 48997994 -233195670 + L2 LINE L2 2885 3049 -223 248 261 25 109 chr1 48998106 48998225 -233195439 + L2 LINE L2 3162 3270 -2 2490 64 3 0 chr1 48998386 48998684 -233194980 + AluY SINE Alu 1 299 -12 1061 188 52 52 chr1 48998743 48998985 -233194679 + MER33 DNA MER1_type 1 245 -2340 2810 22 0 10 chr1 48998985 48999299 -233194365 - AluY SINE Alu 0 311 1 1061 188 52 52 chr1 48999299 48999380 -233194284 + MER33 DNA MER1_type 244 324 0 632 261 86 21 chr1 48999687 48999770 -233193894 + MIR SINE MIR 15 91 -171 2301 88 10 0 chr1 48999770 49000064 -233193600 - AluSp SINE Alu -16 297 1 632 261 86 21 chr1 49000064 49000220 -233193444 + MIR SINE MIR 91 262 0 218 266 0 38 chr1 49000334 49000413 -233193251 + MIR SINE MIR 67 142 -120 264 245 209 36 chr1 49000509 49000648 -233193016 - MIR SINE MIR -64 198 36 887 188 69 4 chr1 49006145 49006367 -233187297 + MIR SINE MIR 16 256 -6 230 271 0 0 chr1 49009446 49009494 -233184170 + MIR SINE MIR 89 136 -72 1906 128 6 67 chr1 49010101 49010428 -233183236 - AluJo SINE Alu -5 307 1 452 333 144 41 chr1 49010486 49011465 -233182199 + L2 LINE L2 1674 2753 -561 1239 169 0 5 chr1 49011575 49011770 -233181894 - AluSq SINE Alu -12 301 108 1772 174 10 0 chr1 49011910 49012204 -233181460 - AluJb SINE Alu -15 297 1 326 329 59 0 chr1 49012441 49012593 -233181071 + L2 LINE L2 2873 3033 -239 1969 160 23 0 chr1 49012602 49012902 -233180762 + AluJo SINE Alu 6 312 0 217 253 15 15 chr1 49013054 49013121 -233180543 + MIR SINE MIR 37 102 -108 1032 270 28 0 chr1 49013223 49013475 -233180189 + MIR SINE MIR 1 259 -3 364 296 43 0 chr1 49014453 49014568 -233179096 + MIR SINE MIR 52 171 -91 225 336 119 7 chr1 49015142 49015285 -233178379 + L2 LINE L2 2216 2374 -940 182 392 40 50 chr1 49015347 49015485 -233178179 + L2 LINE L2 2550 2688 -626 2116 134 10 3 chr1 49015485 49015791 -233177873 - AluSx SINE Alu -4 308 1 182 392 40 50 chr1 49015791 49015857 -233177807 + L2 LINE L2 2688 2753 -561 2623 57 0 0 chr1 49015857 49016155 -233177509 + AluY SINE Alu 1 298 -13 182 392 40 50 chr1 49016155 49016277 -233177387 + L2 LINE L2 2753 2875 -439 2109 101 0 104 chr1 49016277 49016653 -233177011 + MER1B DNA MER1_type 1 337 0 182 392 40 50 chr1 49016653 49016747 -233176917 + L2 LINE L2 2875 2968 -346 239 309 62 31 chr1 49016762 49016859 -233176805 + MIR SINE MIR 73 172 -90 391 210 34 59 chr1 49018515 49018634 -233175030 + MER5B DNA MER1_type 60 175 -3 300 304 71 110 chr1 49018638 49018849 -233174815 + L2 LINE L2 2765 2967 -305 2311 109 0 10 chr1 49018849 49019162 -233174502 - AluSq SINE Alu -3 310 1 300 304 71 110 chr1 49019162 49019362 -233174302 + L2 LINE L2 2967 3173 -99 185 250 0 0 chr1 49019553 49019593 -233174071 - L2 LINE L2 0 3272 3233 496 248 224 0 chr1 49019883 49020044 -233173620 - MIR SINE MIR -37 225 29 281 333 79 0 chr1 49020224 49020350 -233173314 - L2 LINE L2 -3 3269 3134 1671 171 33 4 chr1 49020714 49021015 -233172649 - AluJb SINE Alu 0 309 1 1625 100 8 37 chr1 49021037 49021278 -233172386 - AluSg/x SINE Alu -5 305 72 2488 74 0 0 chr1 49021279 49021577 -233172087 - AluSx SINE Alu -14 298 1 2686 46 10 0 chr1 49021577 49021881 -233171783 - AluY SINE Alu -4 307 1 360 65 0 0 chr1 49021906 49021952 -233171712 - MER66A LTR ERV1 -146 332 287 21 100 0 0 chr1 49022954 49023024 -233170640 + GC_rich Low_complexity Low_complexity 1 70 0 27 0 0 0 chr1 49023029 49023056 -233170608 + GC_rich Low_complexity Low_complexity 1 27 0 255 114 0 0 chr1 49023235 49023279 -233170385 + (CAGCC)n Simple_repeat Simple_repeat 5 48 0 215 382 0 0 chr1 49023351 49023461 -233170203 + C-rich Low_complexity Low_complexity 1 110 0 201 74 0 0 chr1 49024486 49024513 -233169151 + (CTGGGG)n Simple_repeat Simple_repeat 1 27 0 219 289 13 0 chr1 49024972 49025048 -233168616 + GA-rich Low_complexity Low_complexity 4 80 0 218 230 40 0 chr1 49025185 49025259 -233168405 + GA-rich Low_complexity Low_complexity 1 77 0 2316 79 21 3 chr1 49028226 49028516 -233165148 - AluY SINE Alu -16 295 1 623 197 85 0 chr1 49028532 49028824 -233164840 - L1MB7 LINE L1 -10 6174 5824 451 246 32 32 chr1 49029127 49029253 -233164411 - MIR SINE MIR -111 151 26 315 304 96 44 chr1 49029608 49029858 -233163806 - L2 LINE L2 -924 2390 2128 207 139 0 0 chr1 49032350 49032386 -233161278 + (CGGGG)n Simple_repeat Simple_repeat 5 40 0 190 298 18 0 chr1 49032756 49032813 -233160851 - MIR SINE MIR -64 144 87 318 213 176 28 chr1 49032977 49033085 -233160579 - MIR SINE MIR -62 146 23 448 255 92 48 chr1 49033142 49033197 -233160467 - MIR SINE MIR 0 262 211 2598 51 0 0 chr1 49033197 49033493 -233160171 + AluY SINE Alu 1 296 -15 448 255 92 48 chr1 49033493 49033688 -233159976 - MIR SINE MIR -51 211 1 2015 135 7 0 chr1 49034106 49034394 -233159270 + AluSx SINE Alu 13 302 -10 211 323 48 36 chr1 49034463 49034630 -233159034 - L2 LINE L2 -1359 1955 1787 2337 143 71 7 chr1 49034656 49035062 -233158602 - MLT1C LTR MaLR 0 467 36 1987 132 3 64 chr1 49035064 49035205 -233158459 + AluJo SINE Alu 1 149 -163 2382 79 3 7 chr1 49035205 49035508 -233158156 + AluY SINE Alu 7 308 -3 1987 132 3 64 chr1 49035508 49035693 -233157971 + AluJo SINE Alu 149 307 -5 656 162 0 0 chr1 49035708 49035819 -233157845 - AluSg/x SINE Alu -68 244 134 480 326 0 7 chr1 49035890 49036037 -233157627 - LTR33 LTR ERVL -375 146 1 1144 234 53 36 chr1 49036099 49036458 -233157206 + LTR33 LTR ERVL 157 521 0 490 236 35 35 chr1 49036633 49036777 -233156887 - L2 LINE L2 -1 3312 3169 207 289 105 26 chr1 49036764 49036878 -233156786 - L2 LINE L2 -1007 2307 2185 * 833 237 80 18 chr1 49036975 49037199 -233156465 - MIR SINE MIR -13 249 12 2174 111 3 29 chr1 49037207 49037348 -233156316 + AluSx SINE Alu 1 144 -168 2182 109 16 0 chr1 49037348 49037651 -233156013 + AluSc SINE Alu 1 308 -1 2174 111 3 29 chr1 49037651 49037815 -233155849 + AluSx SINE Alu 144 298 -14 331 294 90 39 chr1 49037842 49038097 -233155567 - L2 LINE L2 -1297 2017 1750 206 216 409 11 chr1 49039120 49039208 -233154456 + L2 LINE L2 2947 3069 -244 2613 142 40 7 chr1 49039210 49039703 -233153961 - MER44D DNA MER2_type 0 609 1 659 266 39 30 chr1 49039714 49039947 -233153717 + L2 LINE L2 3079 3313 0 2410 65 0 14 chr1 49040038 49040372 -233153292 - AluY SINE Alu 0 311 1 267 306 45 18 chr1 49040653 49040764 -233152900 - L2 LINE L2 -181 3091 2978 216 196 36 18 chr1 49040841 49040897 -233152767 - L2 LINE L2 -2 3311 3255 353 344 151 11 chr1 49041075 49041360 -233152304 - L2 LINE L2 -340 2974 2650 238 162 14 68 chr1 49041976 49042050 -233151614 + (CCCCG)n Simple_repeat Simple_repeat 5 74 0 218 330 168 39 chr1 49042730 49042909 -233150755 - L2 LINE L2 -11 3261 3060 785 244 85 4 chr1 49043154 49043400 -233150264 + L1ME3 LINE L1 5896 6161 -1 206 291 55 0 chr1 49043403 49043458 -233150206 - L2 LINE L2 -933 2381 2324 427 302 75 6 chr1 49043548 49043707 -233149957 - MIR SINE MIR -5 257 88 358 327 68 36 chr1 49043729 49044010 -233149654 - L2 LINE L2 -1060 2254 1965 208 182 23 0 chr1 49044809 49044853 -233148811 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 458 219 38 19 chr1 49044982 49045087 -233148577 + MIR SINE MIR 82 188 -74 345 297 17 34 chr1 49045180 49045298 -233148366 + L2 LINE L2 2608 2723 -591 911 321 98 22 chr1 49045329 49045949 -233147715 + L2 LINE L2 2562 3236 -77 2236 102 10 16 chr1 49045949 49046253 -233147411 - AluSq SINE Alu -11 302 1 911 321 98 22 chr1 49046253 49046338 -233147326 + L2 LINE L2 3236 3313 0 503 305 137 32 chr1 49046401 49046686 -233146978 - L2 LINE L2 -3 3269 2955 584 350 38 38 chr1 49046767 49047227 -233146437 - L2 LINE L2 -462 2852 2390 2356 99 0 3 chr1 49047227 49047529 -233146135 - AluSx SINE Alu -10 302 2 584 350 38 38 chr1 49047529 49047573 -233146091 - L2 LINE L2 -923 2391 2348 318 338 81 20 chr1 49047587 49047735 -233145929 + L1MC4a LINE L1 5773 5929 -1879 2393 98 0 3 chr1 49047745 49048042 -233145622 + AluSx SINE Alu 1 296 -16 1320 199 0 27 chr1 49048068 49048330 -233145334 + AluJo SINE Alu 41 295 -17 311 187 67 13 chr1 49048333 49048408 -233145256 + L1ME4a LINE L1 5931 6009 -112 1907 159 17 0 chr1 49048534 49048823 -233144841 - AluJo SINE Alu -18 294 1 2492 71 10 13 chr1 49048906 49049216 -233144448 + AluY SINE Alu 1 309 -2 738 328 92 27 chr1 49049279 49049628 -233144036 - L2 LINE L2 -214 3058 2657 2153 116 13 10 chr1 49049628 49049929 -233143735 + AluSx SINE Alu 1 302 -10 738 328 92 27 chr1 49049929 49050140 -233143524 - L2 LINE L2 -615 2657 2461 370 287 70 0 chr1 49052039 49052154 -233141510 + L2 LINE L2 3150 3272 0 581 277 182 5 chr1 49053575 49053795 -233139869 - MIR SINE MIR -3 259 1 569 264 141 0 chr1 49053968 49054131 -233139533 + MER5A DNA MER1_type 4 189 0 1765 70 0 0 chr1 49054161 49054390 -233139274 + LTR13 LTR ERVK 779 1007 0 2033 135 0 7 chr1 49054502 49054805 -233138859 + AluSx SINE Alu 1 301 -11 1733 281 59 51 chr1 49055279 49055425 -233138239 + L2 LINE L2 2188 2331 -983 2210 91 0 19 chr1 49055425 49055732 -233137932 - AluSq SINE Alu -11 302 2 1733 281 59 51 chr1 49055732 49056296 -233137368 + L2 LINE L2 2331 2904 -410 371 297 209 30 chr1 49056319 49056750 -233136914 + L2 LINE L2 1991 2498 -816 213 39 0 0 chr1 49056951 49056977 -233136687 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 2090 108 0 0 chr1 49056979 49057258 -233136406 - AluSg SINE Alu -31 279 1 567 258 8 0 chr1 49057542 49057674 -233135990 + MER63A DNA MER1_type 54 186 -24 245 276 39 70 chr1 49057802 49057836 -233135828 - L1MC/D LINE L1 -2222 5586 5552 2151 82 3 0 chr1 49057836 49058160 -233135504 + AluSp SINE Alu 1 325 0 245 276 39 70 chr1 49058160 49058226 -233135438 - L1MC/D LINE L1 -2256 5552 5489 2232 93 0 13 chr1 49058226 49058536 -233135128 - AluSx SINE Alu -6 306 1 245 276 39 70 chr1 49058536 49058589 -233135075 - L1MC/D LINE L1 -2319 5489 5436 2156 120 0 0 chr1 49059631 49059931 -233133733 - AluSg SINE Alu -10 300 1 565 284 132 5 chr1 49060043 49060247 -233133417 - MIR SINE MIR -20 242 13 920 218 58 58 chr1 49061217 49061284 -233132380 + MIR SINE MIR 2 68 -194 1977 124 0 13 chr1 49061284 49061583 -233132081 + AluJo SINE Alu 1 295 -17 920 218 58 58 chr1 49061583 49061776 -233131888 + MIR SINE MIR 67 262 0 2143 91 9 35 chr1 49061995 49062314 -233131350 + AluY SINE Alu 1 311 0 7708 178 40 38 chr1 49062320 49062683 -233130981 - L1MB8 LINE L1 -9 6169 5808 1847 169 0 0 chr1 49062683 49062978 -233130686 - AluJb SINE Alu -17 295 1 7708 178 40 38 chr1 49062978 49064155 -233129509 - L1MB8 LINE L1 -370 5808 4634 2125 67 46 11 chr1 49064155 49064440 -233129224 + AluY SINE Alu 1 295 -16 2280 107 0 0 chr1 49064449 49064757 -233128907 - AluSc SINE Alu -1 308 1 7708 178 40 38 chr1 49064757 49065990 -233127674 - L1MB8 LINE L1 -1551 4627 3371 552 316 144 12 chr1 49065997 49066444 -233127220 + L2 LINE L2 2637 3142 -130 663 269 97 18 chr1 49066706 49066933 -233126731 - MIR SINE MIR -17 245 1 2381 67 0 0 chr1 49067619 49067919 -233125745 - AluY SINE Alu -11 300 1 225 299 17 29 chr1 49068807 49068981 -233124683 + (TTTA)n Simple_repeat Simple_repeat 4 175 0 * 244 335 0 20 chr1 49068865 49069017 -233124647 + (TTCA)n Simple_repeat Simple_repeat 4 152 0 1614 145 71 17 chr1 49070036 49070197 -233123467 - AluJb SINE Alu 0 312 161 2346 57 0 10 chr1 49070197 49070528 -233123136 - AluY SINE Alu 0 311 1 1614 145 71 17 chr1 49070528 49070662 -233123002 - AluJb SINE Alu -151 161 1 1007 221 57 16 chr1 49070663 49070907 -233122757 - MIR SINE MIR -6 256 3 253 278 8 60 chr1 49072120 49072253 -233121411 + C-rich Low_complexity Low_complexity 6 131 0 2262 106 0 0 chr1 49072295 49072597 -233121067 + AluSx SINE Alu 1 302 -10 330 305 89 30 chr1 49072630 49072833 -233120831 + L2 LINE L2 2097 2311 -1003 309 282 38 30 chr1 49074159 49074290 -233119374 + L3 LINE CR1 1290 1421 -156 213 241 93 0 chr1 49074393 49074447 -233119217 - L2 LINE L2 -17 3255 3197 1207 177 0 27 chr1 49075024 49075244 -233118420 - AluJo SINE Alu -14 298 85 1705 106 26 43 chr1 49075475 49075777 -233117887 + L1MA4A LINE L1 5652 5948 -355 1111 132 0 0 chr1 49075778 49075937 -233117727 + AluSg/x SINE Alu 133 291 -19 2049 117 18 73 chr1 49075937 49076066 -233117598 + L1MA4A LINE L1 5936 6071 -232 2063 112 3 13 chr1 49076066 49076370 -233117294 - AluSx SINE Alu 0 312 12 2049 117 18 73 chr1 49076370 49076624 -233117040 + L1MA4A LINE L1 6071 6298 -5 800 232 84 4 chr1 49076624 49076861 -233116803 + L1MD2 LINE L1 5885 6140 -219 572 224 28 0 chr1 49076869 49077012 -233116652 + L1MD2 LINE L1 6203 6349 -10 817 315 82 16 chr1 49077051 49077419 -233116245 + L1ME4a LINE L1 5580 5971 -150 2264 91 0 0 chr1 49077439 49077737 -233115927 - AluY SINE Alu -12 299 2 23 0 0 0 chr1 49077741 49077764 -233115900 + AT_rich Low_complexity Low_complexity 1 23 0 2019 109 3 14 chr1 49078289 49078582 -233115082 - AluSg SINE Alu -20 290 1 2288 113 0 0 chr1 49079113 49079424 -233114240 - AluSx SINE Alu -1 311 1 207 0 0 0 chr1 49079893 49079916 -233113748 + (CA)n Simple_repeat Simple_repeat 2 24 0 369 274 108 25 chr1 49082713 49082870 -233110794 - MIR SINE MIR -53 209 40 201 175 0 0 chr1 49083051 49083091 -233110573 + GA-rich Low_complexity Low_complexity 3 42 0 186 286 107 0 chr1 49083355 49083439 -233110225 - L2 LINE L2 -1037 2277 2185 764 304 39 0 chr1 49083452 49083682 -233109982 - MIR SINE MIR 0 262 24 185 143 29 0 chr1 49085906 49085941 -233107723 + L2 LINE L2 3187 3222 -91 331 369 119 6 chr1 49087267 49087755 -233105909 + L2 LINE L2 2435 2977 -337 181 339 164 0 chr1 49089379 49089550 -233104114 + L2 LINE L2 1699 1897 -1417 847 142 0 8 chr1 49089735 49089869 -233103795 + FLAM_C SINE Alu 1 133 0 206 293 74 94 chr1 49089979 49090331 -233103333 - L2 LINE L2 -98 3174 2830 847 142 0 8 chr1 49090762 49090896 -233102768 + FLAM_C SINE Alu 1 133 0 216 293 74 94 chr1 49091006 49091358 -233102306 - L2 LINE L2 -98 3174 2830 186 264 165 0 chr1 49091745 49091836 -233101828 + L2 LINE L2 2366 2471 -843 798 271 129 0 chr1 49091843 49092068 -233101596 - MIR SINE MIR -1 261 8 308 306 28 0 chr1 49092664 49092772 -233100892 - MIR SINE MIR -25 237 127 296 266 0 0 chr1 49092796 49092860 -233100804 + L2 LINE L2 3248 3311 -2 441 181 0 113 chr1 49093072 49093113 -233100551 - L1MB4 LINE L1 0 6180 6136 2196 79 7 0 chr1 49093113 49093404 -233100260 - AluSg SINE Alu -16 294 2 441 181 0 113 chr1 49093404 49093495 -233100169 - L1MB4 LINE L1 -44 6136 6063 812 144 0 0 chr1 49093537 49093655 -233100009 - FLAM_C SINE Alu -15 118 1 508 128 64 0 chr1 49093696 49093790 -233099874 - L1MB2 LINE L1 -123 6048 5949 391 278 134 43 chr1 49094493 49094680 -233098984 - MIR3 SINE MIR -4 204 1 2240 97 0 3 chr1 49096260 49096568 -233097096 + AluSx SINE Alu 1 307 -5 1450 260 65 22 chr1 49096579 49097071 -233096593 + L1MC4a LINE L1 5440 5952 -1856 1905 133 118 0 chr1 49097086 49097409 -233096255 - MER46B DNA MER2_type 0 236 1 2146 127 0 6 chr1 49098098 49098412 -233095252 + AluSx SINE Alu 1 312 0 324 0 0 0 chr1 49099110 49099146 -233094518 + (TG)n Simple_repeat Simple_repeat 2 37 0 1715 88 73 36 chr1 49099618 49099920 -233093744 - AluSx SINE Alu 0 312 1 290 252 244 9 chr1 49099927 49100042 -233093622 - MIR SINE MIR -106 156 15 1079 126 0 0 chr1 49100544 49100723 -233092941 - FRAM SINE Alu 0 178 1 1929 145 20 33 chr1 49102112 49102416 -233091248 - AluJb SINE Alu -12 300 1 311 261 0 0 chr1 49102700 49102765 -233090899 + MLT1K LTR MaLR 16 80 -508 231 265 60 36 chr1 49102899 49102982 -233090682 + MIR SINE MIR 28 82 -126 196 239 0 0 chr1 49103059 49103105 -233090559 + L2 LINE L2 786 831 -2483 1682 143 64 0 chr1 49103108 49103373 -233090291 + AluJo SINE Alu 1 282 -30 183 42 0 0 chr1 49103379 49103403 -233090261 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2389 91 3 10 chr1 49103410 49103719 -233089945 + AluSc SINE Alu 1 307 -2 4437 263 93 34 chr1 49103722 49104724 -233088940 + L2 LINE L2 825 1766 -1547 2461 93 0 3 chr1 49104724 49105036 -233088628 + AluY SINE Alu 1 311 0 4437 263 93 34 chr1 49105036 49105054 -233088610 + L2 LINE L2 1766 1781 -1532 2266 118 20 0 chr1 49105054 49105359 -233088305 + AluSx SINE Alu 2 312 0 4437 263 93 34 chr1 49105359 49106604 -233087060 + L2 LINE L2 1781 3226 -87 391 292 146 0 chr1 49106637 49106808 -233086856 + MER91A DNA MER1_type 1 196 0 244 273 52 0 chr1 49106899 49106976 -233086688 + MIR SINE MIR 104 184 -78 1204 191 42 39 chr1 49106976 49107259 -233086405 + L1MB5 LINE L1 5873 6156 -18 263 235 0 0 chr1 49107294 49107345 -233086319 + L2 LINE L2 3255 3305 -8 2316 106 10 0 chr1 49107715 49108018 -233085646 + AluSx SINE Alu 1 306 -6 1996 150 3 0 chr1 49108192 49108485 -233085179 - AluJo SINE Alu -18 294 1 298 301 159 21 chr1 49110302 49110541 -233083123 - L2 LINE L2 -556 2758 2487 371 268 10 0 chr1 49111251 49111348 -233082316 + MIR SINE MIR 87 184 -78 206 331 96 28 chr1 49112351 49112602 -233081062 + L2 LINE L2 2709 2976 -338 2419 88 3 0 chr1 49112700 49112997 -233080667 - AluSx SINE Alu -14 298 1 191 328 127 42 chr1 49113163 49113227 -233080437 + L2 LINE L2 3018 3075 -197 2286 121 0 10 chr1 49113227 49113540 -233080124 - AluSq SINE Alu -3 310 1 1785 154 18 3 chr1 49113543 49113829 -233079835 - AluJo SINE Alu -2 310 21 191 328 127 42 chr1 49113829 49113949 -233079715 + L2 LINE L2 3076 3222 -50 293 294 93 36 chr1 49114489 49114683 -233078981 - L2 LINE L2 -479 2835 2631 2679 52 0 0 chr1 49115916 49116226 -233077438 + AluY SINE Alu 1 310 -1 728 201 40 0 chr1 49116290 49116439 -233077225 + MIR SINE MIR 45 199 -63 2212 101 0 17 chr1 49116700 49116996 -233076668 - AluSx SINE Alu -21 291 1 186 259 0 37 chr1 49117030 49117084 -233076580 - MIR SINE MIR -119 143 92 286 361 0 0 chr1 49117779 49117887 -233075777 + L2 LINE L2 2919 3026 -246 981 112 0 8 chr1 49118322 49118456 -233075208 - FLAM_C SINE Alu -10 133 1 1151 138 0 0 chr1 49119130 49119297 -233074367 + AluSg/x SINE Alu 132 298 -14 353 137 0 5 chr1 49119629 49119690 -233073974 + Alu SINE Alu 1 52 -251 219 339 213 5 chr1 49122920 49123141 -233070523 + L2 LINE L2 2167 2433 -881 217 285 19 0 chr1 49123647 49123722 -233069942 + MIR SINE MIR 105 181 -62 398 317 0 30 chr1 49124529 49124696 -233068968 + (CCCCAG)n Simple_repeat Simple_repeat 5 166 0 319 304 6 39 chr1 49124709 49124890 -233068774 + (CCCCAA)n Simple_repeat Simple_repeat 5 179 0 533 265 79 92 chr1 49125178 49125506 -233068158 + L2 LINE L2 2947 3270 -2 2159 105 4 0 chr1 49125997 49126274 -233067390 + AluSg SINE Alu 2 279 -31 869 94 0 47 chr1 49126473 49126601 -233067063 - FLAM_C SINE Alu -9 134 13 341 263 8 51 chr1 49126602 49126720 -233066944 - MER33 DNA MER1_type -207 117 5 950 266 154 17 chr1 49127396 49127612 -233066052 + L2 LINE L2 2635 2820 -493 186 43 0 0 chr1 49127612 49127635 -233066029 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 950 266 154 17 chr1 49127635 49127927 -233065737 + L2 LINE L2 2820 3313 0 556 249 85 28 chr1 49127925 49128102 -233065562 + MIR SINE MIR 11 197 -65 * 2263 121 0 3 chr1 49128104 49128410 -233065254 + AluSx SINE Alu 1 305 -7 234 360 45 0 chr1 49128413 49128524 -233065140 - L2 LINE L2 -4 3268 3153 1054 114 18 12 chr1 49128752 49128919 -233064745 + LOR1-int LTR ERV1 204 371 -7749 6006 121 70 4 chr1 49128929 49129950 -233063714 + LOR1-int LTR ERV1 203 1290 -6830 2343 93 0 13 chr1 49129956 49130258 -233063406 - AluY SINE Alu -13 298 1 7895 110 62 79 chr1 49130258 49130518 -233063146 - LOR1b-int LTR ERV1 -6307 1813 1550 2321 78 0 62 chr1 49130518 49130840 -233062824 - AluY SINE Alu -9 302 1 7895 110 62 79 chr1 49130840 49131158 -233062506 - LOR1b-int LTR ERV1 -6570 1550 1228 2343 86 0 46 chr1 49131158 49131483 -233062181 - AluSx SINE Alu -2 310 1 7895 110 62 79 chr1 49131483 49132543 -233061121 - LOR1b-int LTR ERV1 -6892 1228 203 1929 122 93 15 chr1 49132553 49132896 -233060768 - LOR1b-int LTR ERV1 -7749 371 2 1787 174 115 14 chr1 49132897 49133316 -233060348 - LOR1b LTR ERV1 0 461 1 1296 237 84 37 chr1 49133316 49133805 -233059859 + HAL1 LINE L1 1996 2507 0 1557 299 62 50 chr1 49133961 49134838 -233058826 + L1MEd LINE L1 367 1253 -4866 254 271 57 29 chr1 49135567 49135637 -233058027 + L2 LINE L2 3192 3263 -9 2211 69 83 0 chr1 49136335 49136612 -233057052 - AluY SINE Alu -11 300 1 1168 110 0 0 chr1 49136612 49136757 -233056907 - AluSq/x SINE Alu -168 145 1 478 335 5 5 chr1 49137789 49137995 -233055669 + L2 LINE L2 2853 3058 -214 238 282 58 10 chr1 49138100 49138203 -233055461 - L2 LINE L2 -656 2658 2551 208 320 82 33 chr1 49138425 49138547 -233055117 - MIR SINE MIR -127 135 8 1825 174 147 2 chr1 49139888 49140290 -233053374 - LOR1b LTR ERV1 0 461 2 590 143 0 0 chr1 49140291 49140382 -233053282 - LOR1b-int LTR ERV1 0 8120 8030 * 1801 110 4 4 chr1 49140381 49140645 -233053019 - LOR1-int LTR ERV1 -2056 6064 5801 1749 92 28 78 chr1 49140635 49140756 -233052908 - LOR1-int LTR ERV1 -2596 5524 5398 * 2519 79 0 3 chr1 49140756 49141061 -233052603 + AluY SINE Alu 1 304 -7 2350 95 0 13 chr1 49141071 49141377 -233052287 + AluY SINE Alu 1 302 -9 1749 92 28 78 chr1 49141377 49141602 -233052062 - LOR1-int LTR ERV1 -2731 5389 5185 780 76 92 0 chr1 49141722 49141841 -233051823 - LOR1-int LTR ERV1 -2942 5178 5049 1563 150 29 8 chr1 49141841 49142087 -233051577 - AluSx SINE Alu -61 251 1 618 100 0 0 chr1 49142088 49142178 -233051486 - LOR1-int LTR ERV1 -3945 4175 4086 13859 113 46 33 chr1 49142178 49142596 -233051068 - LOR1-int LTR ERV1 -4229 3891 3480 4654 62 85 133 chr1 49142596 49143370 -233050294 + LTR12 LTR ERV1 1 731 -95 2470 88 7 0 chr1 49143370 49143675 -233049989 + AluY SINE Alu 1 307 -4 4654 62 85 133 chr1 49143675 49143767 -233049897 + LTR12 LTR ERV1 731 826 0 13859 113 46 33 chr1 49143767 49145091 -233048573 - LOR1-int LTR ERV1 -4640 3480 2102 2375 119 0 0 chr1 49145091 49145403 -233048261 - AluSq SINE Alu -1 312 1 13859 113 46 33 chr1 49145403 49146185 -233047479 - LOR1-int LTR ERV1 -6018 2102 1332 1233 102 0 0 chr1 49146207 49146364 -233047300 - AluSg/x SINE Alu 0 312 156 402 313 60 68 chr1 49147007 49147369 -233046295 - HAL1b LINE L1 -610 738 374 2184 112 0 33 chr1 49147369 49147674 -233045990 - AluSg SINE Alu -15 295 1 402 313 60 68 chr1 49147674 49147709 -233045955 - HAL1b LINE L1 -974 374 340 1945 138 0 36 chr1 49147709 49148014 -233045650 - AluJo SINE Alu -14 298 5 402 313 60 68 chr1 49148014 49148084 -233045580 - HAL1b LINE L1 -1008 340 274 2306 107 7 0 chr1 49148423 49148732 -233044932 - AluSx SINE Alu -1 311 1 292 307 128 18 chr1 49148931 49149209 -233044455 + L2 LINE L2 2748 3059 -213 594 184 8 48 chr1 49149247 49149372 -233044292 - L2 LINE L2 -2 3311 3192 444 291 40 46 chr1 49149375 49149550 -233044114 + L2 LINE L2 3116 3289 -24 462 320 79 86 chr1 49149575 49150019 -233043645 - MLT1K LTR MaLR -6 582 142 321 68 0 0 chr1 49150146 49150190 -233043474 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 6806 49 8 29 chr1 49150379 49151250 -233042414 + SVA Other Other 534 1386 0 875 277 15 23 chr1 49151859 49152119 -233041545 - MER20B DNA MER1_type -502 281 24 946 240 53 75 chr1 49152227 49152599 -233041065 + MER20B DNA MER1_type 319 680 -103 2236 113 3 0 chr1 49152599 49152909 -233040755 - AluSx SINE Alu -1 311 1 946 240 53 75 chr1 49152909 49153006 -233040658 + MER20B DNA MER1_type 680 778 -5 1558 111 67 91 chr1 49153079 49153376 -233040288 - AluSx SINE Alu -22 290 1 802 324 55 38 chr1 49155449 49155922 -233037742 - LTR16C LTR ERVL -10 481 1 1026 140 6 6 chr1 49156518 49156682 -233036982 + AluSx SINE Alu 36 199 -113 535 211 0 0 chr1 49156755 49156845 -233036819 + AluSx SINE Alu 201 290 -19 621 215 35 64 chr1 49157327 49157461 -233036203 - MLT1K LTR MaLR -10 578 449 1355 190 9 0 chr1 49157461 49157682 -233035982 + MER58A DNA MER1_type 2 224 0 621 215 35 64 chr1 49157682 49157719 -233035945 - MLT1K LTR MaLR -139 449 412 1603 168 23 29 chr1 49159226 49159536 -233034128 + AluJb SINE Alu 1 308 -4 816 219 63 149 chr1 49159678 49160122 -233033542 + MLT1K LTR MaLR 69 474 -114 1139 347 31 24 chr1 49161043 49161585 -233032079 + ERVL LTR ERVL 1970 2515 -3249 1573 165 53 0 chr1 49162004 49162097 -233031567 + AluJb SINE Alu 25 112 -200 230 0 33 0 chr1 49162097 49162127 -233031537 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1573 165 53 0 chr1 49162127 49162299 -233031365 + AluJb SINE Alu 112 304 -8 1036 179 67 0 chr1 49163784 49163979 -233029685 + MER3 DNA MER1_type 1 208 -1 2007 134 13 3 chr1 49164053 49164360 -233029304 + AluSx SINE Alu 1 310 -2 916 190 5 27 chr1 49164679 49164863 -233028801 - AluSg/x SINE Alu -2 308 129 317 356 20 12 chr1 49165100 49165465 -233028199 + GA-rich Low_complexity Low_complexity 1 367 0 955 196 0 11 chr1 49165524 49165708 -233027956 - AluSg SINE Alu -128 182 1 3775 175 44 7 chr1 49165718 49166472 -233027192 - L1MB7 LINE L1 -78 6106 5325 2056 133 0 0 chr1 49166476 49166770 -233026894 - AluSx SINE Alu -15 297 4 27 29 0 0 chr1 49166775 49166809 -233026855 + AT_rich Low_complexity Low_complexity 1 34 0 665 216 0 22 chr1 49166810 49166949 -233026715 - AluSc SINE Alu 0 309 174 2096 97 0 39 chr1 49166953 49167263 -233026401 - AluSq SINE Alu -15 298 1 2615 183 28 9 chr1 49167271 49167850 -233025814 - L1MB7 LINE L1 -822 5324 4735 260 309 146 36 chr1 49169363 49169583 -233024081 - L2 LINE L2 -2761 553 310 450 256 125 42 chr1 49169755 49170004 -233023660 - MIR SINE MIR 0 262 3 752 241 91 39 chr1 49170383 49170669 -233022995 - L2 LINE L2 0 3313 3013 648 264 82 50 chr1 49170744 49171160 -233022504 + LTR16A1 LTR ERVL 65 457 0 194 232 36 0 chr1 49171160 49171216 -233022448 - L2 LINE L2 -298 3015 2958 285 303 0 13 chr1 49171373 49171449 -233022215 - MIR SINE MIR 0 262 188 295 331 142 8 chr1 49171548 49171937 -233021727 - L2 LINE L2 -201 3071 2623 1462 157 64 0 chr1 49172684 49172933 -233020731 + L1PB3 LINE L1 5883 6147 -7 839 164 0 8 chr1 49172958 49173092 -233020572 + AluJo SINE Alu 2 134 -178 454 327 117 43 chr1 49173107 49173897 -233019767 - L2 LINE L2 -1617 1697 850 355 317 57 51 chr1 49173998 49174100 -233019564 - L2 LINE L2 -1339 1975 1875 2285 93 0 6 chr1 49174100 49174411 -233019253 + AluSx SINE Alu 1 309 -3 355 317 57 51 chr1 49174411 49174820 -233018844 - L2 LINE L2 -1439 1875 1372 791 158 0 24 chr1 49174890 49175017 -233018647 + AluJb SINE Alu 2 125 -187 24 0 0 0 chr1 49175017 49175041 -233018623 + AT_rich Low_complexity Low_complexity 1 24 0 445 314 17 47 chr1 49176520 49176692 -233016972 - L2 LINE L2 -1 3271 3105 1966 106 40 33 chr1 49176767 49177070 -233016594 - AluSx SINE Alu -7 305 1 411 274 230 8 chr1 49177363 49177615 -233016049 - L2 LINE L2 -1014 2300 1993 246 220 11 44 chr1 49179368 49179459 -233014205 + G-rich Low_complexity Low_complexity 1 88 0 186 143 0 0 chr1 49179460 49179495 -233014169 + (CGG)n Simple_repeat Simple_repeat 3 37 0 205 281 0 0 chr1 49179504 49179561 -233014103 + (TTCGGG)n Simple_repeat Simple_repeat 6 62 0 237 65 0 0 chr1 49181235 49181266 -233012398 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 248 295 31 47 chr1 49181602 49181731 -233011933 + MIR SINE MIR 62 188 -74 223 294 145 78 chr1 49182225 49182789 -233010875 - L2 LINE L2 -466 2848 2247 688 254 99 14 chr1 49182854 49183067 -233010597 + MIR SINE MIR 11 241 -21 1799 160 20 0 chr1 49183828 49184128 -233009536 - AluJb SINE Alu -6 306 1 701 304 82 43 chr1 49185502 49185917 -233007747 - L2 LINE L2 0 3272 2842 373 287 30 0 chr1 49185976 49186077 -233007587 + L2 LINE L2 3208 3311 -2 371 260 109 0 chr1 49186481 49186673 -233006991 - L2 LINE L2 -707 2607 2395 1199 174 14 18 chr1 49187150 49187368 -233006296 - MER20 DNA MER1_type -2 217 1 200 284 54 81 chr1 49187406 49187554 -233006110 - L2 LINE L2 -210 3062 2919 722 301 102 19 chr1 49193772 49194293 -232999371 + L2 LINE L2 2331 2894 -420 209 186 0 0 chr1 49246973 49247016 -232946648 + (TG)n Simple_repeat Simple_repeat 2 44 0 279 258 22 34 chr1 49247056 49247234 -232946430 + (TG)n Simple_repeat Simple_repeat 2 177 0 180 0 0 0 chr1 49247359 49247379 -232946285 + (TG)n Simple_repeat Simple_repeat 2 21 0 2184 108 0 0 chr1 49249366 49249661 -232944003 - AluY SINE Alu -16 295 1 2095 99 0 20 chr1 49249671 49249965 -232943699 - AluSx SINE Alu -24 288 1 440 334 137 27 chr1 49249968 49250149 -232943515 - L2 LINE L2 -575 2739 2579 2189 115 0 0 chr1 49250149 49250453 -232943211 + AluSx SINE Alu 1 304 -8 440 334 137 27 chr1 49250453 49250893 -232942771 - L2 LINE L2 -735 2579 2050 399 285 148 49 chr1 49253556 49253782 -232939882 + MIR SINE MIR 4 252 -10 1450 303 3 68 chr1 49255404 49255728 -232937936 + AluSq SINE Alu 5 307 -6 303 364 96 21 chr1 49255845 49256032 -232937632 - MIR SINE MIR -6 256 56 1956 129 51 0 chr1 49258564 49258858 -232934806 - AluSx SINE Alu -2 310 2 625 224 69 0 chr1 49258881 49259055 -232934609 - L2 LINE L2 -610 2704 2519 3867 177 40 18 chr1 49259082 49260121 -232933543 + L1MB7 LINE L1 5102 6165 -19 186 257 57 14 chr1 49260122 49260192 -232933472 + MIR SINE MIR 185 257 -5 2199 113 7 0 chr1 49260207 49260517 -232933147 - AluSq SINE Alu -1 312 1 2267 88 0 0 chr1 49260526 49260820 -232932844 - AluY SINE Alu -17 294 1 212 186 47 0 chr1 49260876 49260919 -232932745 - L2 LINE L2 -30 3242 3198 713 166 166 25 chr1 49261073 49261230 -232932434 - AluJo SINE Alu -17 295 117 222 260 14 27 chr1 49261235 49261308 -232932356 + L2 LINE L2 3172 3243 -70 456 285 105 13 chr1 49261381 49261609 -232932055 + MLT1L LTR MaLR 359 607 -8 469 290 81 32 chr1 49261750 49261971 -232931693 - L2 LINE L2 -869 2445 2214 223 233 0 0 chr1 49262044 49262087 -232931577 - L2 LINE L2 -2 3270 3228 * 415 225 126 89 chr1 49262054 49262245 -232931419 - MIR SINE MIR -6 256 59 192 77 0 0 chr1 49262270 49262296 -232931368 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 1450 149 0 5 chr1 49262296 49262518 -232931146 + AluJb SINE Alu 82 302 -10 27 49 0 0 chr1 49262594 49262635 -232931029 + AT_rich Low_complexity Low_complexity 1 41 0 612 185 37 9 chr1 49262699 49262807 -232930857 + AluJo/FLAM SINE Alu 1 111 -201 1074 142 0 0 chr1 49262809 49262971 -232930693 - AluSp SINE Alu -14 299 138 212 329 174 23 chr1 49263812 49264162 -232929502 + L2 LINE L2 1904 2306 -1008 283 260 90 40 chr1 49264511 49264611 -232929053 + MIR SINE MIR 44 148 -114 1673 156 46 71 chr1 49266596 49266673 -232926991 - Charlie1b DNA MER1_type -2250 511 434 2349 93 3 0 chr1 49266673 49266985 -232926679 - AluSp SINE Alu 0 313 1 1673 156 46 71 chr1 49266985 49267387 -232926277 - Charlie1b DNA MER1_type -2327 434 44 262 249 67 85 chr1 49267511 49267676 -232925988 + MIR SINE MIR 36 197 -65 406 327 154 9 chr1 49269252 49269472 -232924192 + MIR SINE MIR 5 256 -6 2259 77 28 0 chr1 49272483 49272770 -232920894 + AluSc SINE Alu 1 295 -14 672 165 50 0 chr1 49274538 49274659 -232919005 - MER20 DNA MER1_type -6 213 87 234 313 0 0 chr1 49274877 49274941 -232918723 + MIR SINE MIR 183 246 -16 193 273 55 0 chr1 49276682 49276737 -232916927 - L2 LINE L2 -181 3091 3034 817 306 67 9 chr1 49279272 49279599 -232914065 - MLT1K LTR MaLR -26 562 217 300 313 25 68 chr1 49279975 49280138 -232913526 - L2 LINE L2 -668 2646 2491 266 275 22 44 chr1 49280142 49280233 -232913431 + MIR3 SINE MIR 111 199 -9 323 209 63 95 chr1 49281031 49281189 -232912475 + MIR3 SINE MIR 15 167 -41 640 269 24 12 chr1 49281964 49282131 -232911533 - MIR SINE MIR -90 172 4 1639 147 13 46 chr1 49282267 49282573 -232911091 + AluJo SINE Alu 1 296 -16 434 325 5 57 chr1 49282575 49282769 -232910895 + L2 LINE L2 2622 2805 -509 493 318 153 18 chr1 49282806 49283133 -232910531 + L2 LINE L2 2940 3310 -3 183 80 0 0 chr1 49285337 49285362 -232908302 + (CA)n Simple_repeat Simple_repeat 2 26 0 2111 115 7 3 chr1 49286395 49286699 -232906965 + AluSq SINE Alu 1 305 -8 318 336 30 0 chr1 49286724 49286855 -232906809 + L2 LINE L2 3134 3268 -4 241 364 20 0 chr1 49286910 49287009 -232906655 + L2 LINE L2 2966 3066 -206 1006 115 0 0 chr1 49287140 49287279 -232906385 + AluSp/q SINE Alu 159 297 -16 308 341 20 45 chr1 49287279 49287525 -232906139 - L2 LINE L2 -165 3107 2868 472 303 153 8 chr1 49287580 49287947 -232905717 - L2 LINE L2 -622 2692 2273 679 334 162 20 chr1 49287956 49288275 -232905389 - L2 LINE L2 -1230 2084 1811 2011 85 0 34 chr1 49288275 49288604 -232905060 - AluY SINE Alu 0 319 1 679 334 162 20 chr1 49288604 49289471 -232904193 - L2 LINE L2 -1503 1811 729 215 224 0 15 chr1 49290552 49290619 -232903045 + (TG)n Simple_repeat Simple_repeat 1 66 0 262 179 0 0 chr1 49292190 49292246 -232901418 - AluSq SINE Alu 0 303 248 1577 109 0 0 chr1 49292246 49292456 -232901208 - AluSq SINE Alu -99 214 5 239 312 11 45 chr1 49293789 49293984 -232899680 + CT-rich Low_complexity Low_complexity 1 188 0 526 256 23 15 chr1 49294624 49294757 -232898907 + MER94 DNA DNA 1 134 0 1122 196 92 39 chr1 49303412 49303610 -232890054 - MLT1G3 LTR MaLR 0 542 356 878 214 17 60 chr1 49303610 49303680 -232889984 + MER58A DNA MER1_type 1 72 -2348 1985 128 55 0 chr1 49303680 49303969 -232889695 + AluSq SINE Alu 1 305 -8 878 214 17 60 chr1 49303969 49304132 -232889532 + MER58A DNA MER1_type 72 224 0 1122 196 92 39 chr1 49304132 49304304 -232889360 - MLT1G3 LTR MaLR -186 356 144 388 301 59 52 chr1 49304562 49304851 -232888813 - L2 LINE L2 -470 2844 2554 180 345 85 21 chr1 49304926 49305207 -232888457 - L2 LINE L2 -1003 2311 2013 255 352 0 0 chr1 49305985 49306076 -232887588 + C-rich Low_complexity Low_complexity 1 91 0 789 283 34 0 chr1 49307140 49307373 -232886291 - MIR SINE MIR -1 261 21 2191 123 0 19 chr1 49307651 49307967 -232885697 + AluSx SINE Alu 1 310 -2 197 286 14 14 chr1 49308045 49308115 -232885549 + L2 LINE L2 3184 3253 -19 2529 62 16 0 chr1 49308641 49308947 -232884717 - AluY SINE Alu 0 311 1 422 256 72 16 chr1 49309290 49309415 -232884249 + MIR SINE MIR 130 261 -1 491 333 153 8 chr1 49309425 49310080 -232883584 - L2 LINE L2 -545 2769 2020 873 194 0 0 chr1 49314448 49314587 -232879077 + FRAM SINE Alu 5 143 -33 216 0 0 0 chr1 49314592 49314616 -232879048 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 212 136 0 45 chr1 49315925 49315991 -232877673 + (A)n Simple_repeat Simple_repeat 1 63 0 288 300 63 67 chr1 49317376 49317437 -232876227 - L2 LINE L2 -220 3052 2992 2255 113 3 3 chr1 49317437 49317738 -232875926 - AluSx SINE Alu -11 301 1 288 300 63 67 chr1 49317738 49317899 -232875765 - L2 LINE L2 -280 2992 2831 197 233 66 0 chr1 49318038 49318113 -232875551 + L2 LINE L2 3152 3276 -37 268 282 73 18 chr1 49318352 49318462 -232875202 - MIR SINE MIR -127 135 20 263 310 74 50 chr1 49318884 49318967 -232874697 + L2 LINE L2 2827 2906 -366 2343 96 10 3 chr1 49318967 49319269 -232874395 - AluSx SINE Alu -8 304 1 263 310 74 50 chr1 49319269 49319427 -232874237 + L2 LINE L2 2906 3074 -198 949 274 130 24 chr1 49319518 49319706 -232873958 - L2 LINE L2 0 3313 3146 1743 103 130 11 chr1 49319706 49319968 -232873696 + AluSg SINE Alu 1 293 -17 949 274 130 24 chr1 49319968 49320239 -232873425 - L2 LINE L2 -167 3146 2805 752 199 74 11 chr1 49320266 49320442 -232873222 - L2 LINE L2 -750 2564 2378 217 298 97 24 chr1 49320411 49320535 -232873129 - MIR3 SINE MIR -73 135 3 * 2351 91 0 3 chr1 49320578 49320874 -232872790 + AluSc SINE Alu 1 295 -14 2196 112 30 3 chr1 49321003 49321307 -232872357 - AluSx SINE Alu 0 312 1 350 68 0 17 chr1 49321318 49321377 -232872287 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 2134 97 0 4 chr1 49321385 49321654 -232872010 - AluSx SINE Alu -44 268 1 30 27 0 0 chr1 49321663 49321700 -232871964 + AT_rich Low_complexity Low_complexity 1 37 0 266 278 111 34 chr1 49321769 49321946 -232871718 - L1ME4a LINE L1 -97 6024 5823 2413 61 14 0 chr1 49321946 49322239 -232871425 - AluY SINE Alu -14 297 1 266 278 111 34 chr1 49322239 49322295 -232871369 - L1ME4a LINE L1 -298 5823 5773 2311 99 3 0 chr1 49322370 49322672 -232870992 + AluSp SINE Alu 1 303 -10 2489 59 0 39 chr1 49322679 49322986 -232870678 + AluY SINE Alu 1 295 -16 2322 95 3 0 chr1 49323250 49323545 -232870119 - AluSp SINE Alu -17 296 1 339 261 98 13 chr1 49323579 49323732 -232869932 - HAL1b LINE L1 -437 911 746 382 289 61 41 chr1 49323912 49324009 -232869655 - HAL1 LINE L1 -766 1741 1647 2554 60 0 3 chr1 49324009 49324308 -232869356 - AluY SINE Alu -13 298 1 382 289 61 41 chr1 49324308 49324407 -232869257 - HAL1 LINE L1 -860 1647 1541 2420 101 0 0 chr1 49324496 49324794 -232868870 - AluSg SINE Alu -12 298 1 1304 120 0 0 chr1 49324794 49324969 -232868695 - AluSg/x SINE Alu -14 298 124 258 257 86 13 chr1 49325615 49325767 -232867897 + L1P5 LINE L1 5284 5446 -705 466 155 0 0 chr1 49325767 49325838 -232867826 - MER2 DNA MER2_type -2 343 273 2071 112 45 7 chr1 49325838 49326125 -232867539 + AluSx SINE Alu 1 298 -14 297 0 0 0 chr1 49326125 49326158 -232867506 + (TA)n Simple_repeat Simple_repeat 2 34 0 210 71 0 0 chr1 49326157 49326185 -232867479 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 355 307 23 0 chr1 49326202 49326290 -232867374 + L1MC4 LINE L1 6614 6703 -1339 337 337 0 20 chr1 49326248 49326346 -232867318 - L1MC4 LINE L1 -1339 6703 6608 * 1643 136 12 0 chr1 49326350 49326607 -232867057 - MER2 DNA MER2_type -85 260 1 520 261 128 23 chr1 49326620 49326877 -232866787 + L1ME LINE L1 5453 5738 -383 312 217 0 43 chr1 49326925 49326975 -232866689 + MER5A DNA MER1_type 27 75 -114 2320 92 10 10 chr1 49326975 49327280 -232866384 + AluSx SINE Alu 1 305 -7 312 217 0 43 chr1 49327280 49327298 -232866366 + MER5A DNA MER1_type 75 92 -97 294 283 226 0 chr1 49327329 49327435 -232866229 + MER5A DNA MER1_type 60 189 0 342 278 158 0 chr1 49327826 49327959 -232865705 + L2 LINE L2 3116 3269 -3 2195 112 0 16 chr1 49328258 49328563 -232865101 + AluSx SINE Alu 1 300 -12 807 190 0 60 chr1 49328568 49328622 -232865042 + FAM SINE Alu 1 57 -254 1749 104 148 0 chr1 49328622 49328892 -232864772 + AluSq SINE Alu 1 310 -3 807 190 0 60 chr1 49328892 49329021 -232864643 + FAM SINE Alu 57 173 -2 487 304 79 21 chr1 49329247 49329487 -232864177 - MIR SINE MIR 0 262 9 356 200 75 0 chr1 49329544 49329624 -232864040 - L2 LINE L2 -17 3296 3211 2240 105 10 3 chr1 49329624 49329920 -232863744 - AluSx SINE Alu -14 298 1 1447 151 0 5 chr1 49330377 49330595 -232863069 - AluJb SINE Alu -11 301 85 782 285 118 29 chr1 49330596 49330919 -232862745 - L2 LINE L2 -601 2713 2349 2274 95 3 3 chr1 49330919 49331215 -232862449 - AluSx SINE Alu -16 296 1 782 285 118 29 chr1 49331215 49331274 -232862390 - L2 LINE L2 -965 2349 2297 5899 23 3 0 chr1 49331340 49332042 -232861622 + L1PA5 LINE L1 5442 6145 -9 189 0 0 0 chr1 49332042 49332063 -232861601 + (TA)n Simple_repeat Simple_repeat 2 22 0 2104 110 41 3 chr1 49332275 49332565 -232861099 - AluSx SINE Alu -11 301 1 2390 92 3 0 chr1 49332714 49333009 -232860655 - AluSx SINE Alu -16 296 1 1835 164 6 26 chr1 49333420 49333731 -232859933 - AluJb SINE Alu -7 305 1 341 284 20 10 chr1 49333774 49333876 -232859788 + MIR SINE MIR 96 198 -64 605 198 51 19 chr1 49333878 49334035 -232859629 - L2 LINE L2 0 3313 3152 2178 112 0 10 chr1 49334197 49334492 -232859172 + AluSx SINE Alu 1 292 -20 1036 129 71 0 chr1 49334492 49334647 -232859017 + AluSg/x SINE Alu 134 299 -13 371 258 0 0 chr1 49334650 49334743 -232858921 - L2 LINE L2 -534 2780 2688 2523 80 0 0 chr1 49334743 49335042 -232858622 + AluSc SINE Alu 1 299 -10 878 118 8 0 chr1 49335050 49335169 -232858495 + AluSq/x SINE Alu 1 120 -192 381 21 0 0 chr1 49335269 49335316 -232858348 - AluY SINE Alu -254 49 3 396 298 86 20 chr1 49335324 49335616 -232858048 + L1MC4a LINE L1 4520 4830 -1316 1612 132 7 78 chr1 49335890 49336171 -232857493 + AluJo SINE Alu 40 300 -12 529 315 33 12 chr1 49336241 49336482 -232857182 + L1MC4a LINE L1 5538 5783 -338 1268 292 54 23 chr1 49336497 49336980 -232856684 - LTR33 LTR ERVL -3 518 21 306 219 31 70 chr1 49336988 49337116 -232856548 + L1MC4a LINE L1 5789 5911 -1897 1459 179 9 83 chr1 49337174 49337320 -232856344 + AluJb SINE Alu 1 111 -191 2207 108 0 16 chr1 49337320 49337455 -232856209 + AluY SINE Alu 1 137 -174 2499 57 0 41 chr1 49337455 49337773 -232855891 + AluY SINE Alu 1 305 -6 2207 108 0 16 chr1 49337773 49337942 -232855722 + AluY SINE Alu 137 300 -11 1459 179 9 83 chr1 49337942 49338120 -232855544 + AluJb SINE Alu 111 301 -1 1665 188 83 0 chr1 49338305 49338593 -232855071 + AluJo SINE Alu 1 312 0 1001 228 117 28 chr1 49339154 49339478 -232854186 + L1MC4 LINE L1 5473 5825 -1983 610 194 18 12 chr1 49339608 49339773 -232853891 + L1MC4 LINE L1 6455 6620 -1422 1821 152 47 14 chr1 49339774 49340071 -232853593 + AluJb SINE Alu 3 309 -3 1086 202 0 0 chr1 49340073 49340266 -232853398 + AluJb SINE Alu 112 304 -8 264 200 0 0 chr1 49340272 49340327 -232853337 + (TG)n Simple_repeat Simple_repeat 2 56 0 308 353 23 40 chr1 49340327 49340400 -232853264 + L1MC4 LINE L1 6615 6688 -1354 1710 168 21 21 chr1 49340400 49340685 -232852979 - AluJo SINE Alu -23 289 5 308 353 23 40 chr1 49340685 49340784 -232852880 + L1MC4 LINE L1 6688 6784 -1258 597 117 0 0 chr1 49340788 49340882 -232852782 - AluSp/q SINE Alu -6 307 214 292 133 0 0 chr1 49340883 49340928 -232852736 + L1MC4 LINE L1 6775 6819 -1223 2028 126 14 6 chr1 49340929 49341278 -232852386 + L1PA16 LINE L1 5806 6157 -9 1903 190 132 16 chr1 49341857 49342259 -232851405 + L1MC4 LINE L1 6806 7160 -882 2075 141 3 3 chr1 49342259 49342558 -232851106 + AluSx SINE Alu 1 299 -13 1870 180 0 13 chr1 49342567 49342883 -232850781 + AluJo SINE Alu 1 312 0 1903 190 132 16 chr1 49342883 49342964 -232850700 + L1MC4 LINE L1 7167 7356 -686 380 237 0 21 chr1 49342957 49343054 -232850610 + L1MD3 LINE L1 7891 7985 -10 * 306 295 90 57 chr1 49343079 49343201 -232850463 + L1ME4a LINE L1 5762 5887 -234 1924 160 7 0 chr1 49343209 49343496 -232850168 + AluJb SINE Alu 1 289 -23 25 0 0 0 chr1 49343496 49343521 -232850143 + AT_rich Low_complexity Low_complexity 1 25 0 2101 122 26 0 chr1 49343656 49343960 -232849704 + AluSq SINE Alu 1 312 -1 222 351 48 24 chr1 49344179 49344347 -232849317 + L2 LINE L2 1807 1978 -1336 226 288 30 0 chr1 49344381 49344447 -232849217 + L2 LINE L2 2997 3064 -208 1591 161 0 29 chr1 49344655 49344951 -232848713 + AluJb SINE Alu 21 308 0 201 191 71 0 chr1 49345039 49345081 -232848583 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 2334 117 0 0 chr1 49345242 49345542 -232848122 + AluSx SINE Alu 1 300 -12 1946 145 84 24 chr1 49345569 49345745 -232847919 - MSTB1 LTR MaLR -26 406 242 2421 95 0 0 chr1 49345745 49346040 -232847624 + AluSx SINE Alu 1 295 -17 1946 145 84 24 chr1 49346040 49346242 -232847422 - MSTB1 LTR MaLR -190 242 5 847 304 139 55 chr1 49346249 49347210 -232846454 + L2 LINE L2 2232 3270 -2 2151 115 17 0 chr1 49347254 49347549 -232846115 + AluSq SINE Alu 1 300 -13 2089 117 7 10 chr1 49347550 49347840 -232845824 + AluSx SINE Alu 1 289 -23 342 0 0 0 chr1 49347840 49347878 -232845786 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 479 262 12 76 chr1 49347894 49347956 -232845708 - L1ME3A LINE L1 -70 6100 6036 2301 101 7 0 chr1 49347956 49348254 -232845410 + AluSq SINE Alu 2 301 -12 479 262 12 76 chr1 49348254 49348363 -232845301 - L1ME3A LINE L1 -134 6036 5940 2195 66 51 11 chr1 49348392 49348701 -232844963 + AluSq SINE Alu 1 320 0 436 284 134 75 chr1 49348769 49349089 -232844575 + LTR67 LTR ERVL 140 478 -79 193 287 138 0 chr1 49349312 49349399 -232844265 - MIR SINE MIR -59 203 105 2475 58 7 19 chr1 49349715 49350025 -232843639 - AluSp SINE Alu -7 306 1 330 263 30 10 chr1 49350103 49350202 -232843462 + MER81 DNA DNA 13 113 -1 650 305 63 8 chr1 49351141 49351380 -232842284 - MIR SINE MIR -3 259 8 248 224 104 15 chr1 49351509 49351576 -232842088 - L2 LINE L2 -16 3256 3184 571 148 0 0 chr1 49351594 49351682 -232841982 + MER69 DNA AcHobo 60 147 -2379 274 247 0 37 chr1 49351677 49351758 -232841906 + MER69 DNA AcHobo 2449 2526 0 * 184 333 17 0 chr1 49351839 49351899 -232841765 + MIR SINE MIR 122 182 -80 374 74 0 19 chr1 49352621 49352675 -232840989 - Alu SINE Alu -247 53 1 879 125 0 0 chr1 49353013 49353133 -232840531 - FLAM_C SINE Alu -9 124 5 2466 89 0 6 chr1 49353157 49353472 -232840192 - AluSq SINE Alu 0 313 1 28 0 0 0 chr1 49353577 49353605 -232840059 + AT_rich Low_complexity Low_complexity 1 28 0 210 143 0 0 chr1 49354938 49354973 -232838691 + (T)n Simple_repeat Simple_repeat 1 35 0 354 23 0 0 chr1 49355186 49355229 -232838435 + (TG)n Simple_repeat Simple_repeat 2 44 0 2243 110 7 0 chr1 49355339 49355638 -232838026 - AluSq SINE Alu -12 301 1 2327 117 0 0 chr1 49356817 49357125 -232836539 - AluSx SINE Alu -4 308 1 1563 66 10 20 chr1 49357219 49357417 -232836247 - AluSq SINE Alu -17 296 101 1381 167 84 24 chr1 49357424 49357675 -232835989 - AluJb SINE Alu -46 266 1 2446 87 0 0 chr1 49357689 49357988 -232835676 - AluSc SINE Alu -10 299 1 1680 84 35 9 chr1 49358227 49358453 -232835211 - AluSg/x SINE Alu -1 311 80 2283 97 7 7 chr1 49358559 49358858 -232834806 - AluSx SINE Alu -13 299 1 2110 120 3 0 chr1 49358990 49359289 -232834375 - AluY SINE Alu -11 300 1 895 161 44 0 chr1 49359290 49359427 -232834237 - AluJb SINE Alu -169 143 1 24 0 0 0 chr1 49359446 49359470 -232834194 + AT_rich Low_complexity Low_complexity 1 24 0 1625 196 14 4 chr1 49359502 49359778 -232833886 + AluJo SINE Alu 1 279 -33 1950 127 3 29 chr1 49359799 49360106 -232833558 - AluSx SINE Alu -13 299 1 214 290 48 0 chr1 49360831 49360893 -232832771 - MER91 DNA MER1_type -80 110 46 211 271 0 0 chr1 49360961 49361009 -232832655 + L2 LINE L2 3266 3313 0 2422 93 3 3 chr1 49361451 49361762 -232831902 - AluSp SINE Alu -2 311 1 2371 90 10 13 chr1 49361814 49362126 -232831538 + AluY SINE Alu 1 311 0 1801 160 13 29 chr1 49362380 49362687 -232830977 - AluJo SINE Alu -10 302 1 2266 103 0 0 chr1 49362815 49363115 -232830549 + AluSg1 SINE Alu 1 300 -9 2050 136 0 32 chr1 49364111 49364421 -232829243 - AluJo SINE Alu -12 300 1 272 341 68 56 chr1 49364440 49364689 -232828975 - L2 LINE L2 -56 3216 2965 1195 68 14 0 chr1 49364772 49364919 -232828745 + AluSq/x SINE Alu 1 149 -164 228 229 0 21 chr1 49365926 49365974 -232827690 + L2 LINE L2 3267 3313 0 273 272 110 52 chr1 49366774 49366910 -232826754 - MIR3 SINE MIR -2 206 63 217 346 69 0 chr1 49367300 49367401 -232826263 - MIR SINE MIR -65 143 36 2524 65 7 0 chr1 49368605 49368912 -232824752 - AluY SINE Alu -2 309 1 503 307 85 0 chr1 49369289 49369478 -232824186 - MIR SINE MIR -12 250 46 2201 108 0 26 chr1 49370137 49370443 -232823221 - AluSx SINE Alu -13 299 2 561 207 39 45 chr1 49370840 49370891 -232822773 - L1MA8 LINE L1 -2 6289 6239 1539 174 47 44 chr1 49370891 49371044 -232822620 - AluJo SINE Alu -13 299 143 2343 95 3 3 chr1 49371044 49371348 -232822316 - AluSc SINE Alu -5 304 1 1539 174 47 44 chr1 49371348 49371492 -232822172 - AluJo SINE Alu -169 143 1 561 207 39 45 chr1 49371492 49371619 -232822045 - L1MA8 LINE L1 -52 6239 6112 451 295 150 5 chr1 49371717 49371930 -232821734 - MIR3 SINE MIR -15 247 3 2265 105 3 3 chr1 49372679 49372974 -232820690 - AluSg SINE Alu -15 295 1 2612 65 0 0 chr1 49372974 49373281 -232820383 - AluY SINE Alu -4 307 1 1871 164 0 3 chr1 49374431 49374723 -232818941 - AluJb SINE Alu -14 298 8 2083 92 31 20 chr1 49375004 49375296 -232818368 - AluSg SINE Alu -15 295 1 2210 108 6 29 chr1 49376278 49376594 -232817070 + AluSq SINE Alu 1 309 -4 779 255 0 0 chr1 49376631 49376784 -232816880 + AluJb SINE Alu 137 289 -23 2298 94 0 0 chr1 49376818 49377106 -232816558 - AluSg1 SINE Alu -21 288 1 1132 170 68 4 chr1 49377201 49377466 -232816198 - L1MA4 LINE L1 -3 6297 6016 590 253 53 69 chr1 49377467 49377551 -232816113 - L1MC5 LINE L1 -178 7783 7699 2374 105 3 0 chr1 49377551 49377857 -232815807 + AluSx SINE Alu 1 307 -5 590 253 53 69 chr1 49377857 49378132 -232815532 - L1MC5 LINE L1 -262 7699 7430 313 252 135 18 chr1 49378222 49378333 -232815331 + L1ME4a LINE L1 5991 6114 -7 2017 154 7 0 chr1 49379075 49379373 -232814291 - AluJb SINE Alu -12 300 1 526 177 0 18 chr1 49379377 49379490 -232814174 - L1MB3 LINE L1 -1 6182 6072 214 389 76 16 chr1 49380159 49380344 -232813320 + L3 LINE CR1 913 1108 -469 1884 202 69 23 chr1 49380947 49381428 -232812236 - MLT1D LTR MaLR 0 505 3 272 242 98 15 chr1 49382257 49382389 -232811275 + Charlie7 DNA MER1_type 2432 2574 -38 1532 161 96 4 chr1 49382470 49382731 -232810933 - AluJb SINE Alu -27 285 1 291 184 0 0 chr1 49383069 49383118 -232810546 + L2 LINE L2 3262 3310 -3 210 372 53 18 chr1 49384579 49384692 -232808972 - L2 LINE L2 -31 3241 3125 2214 105 3 0 chr1 49384710 49385004 -232808660 + AluY SINE Alu 1 295 -16 554 264 175 48 chr1 49385019 49385481 -232808183 - L2 LINE L2 -354 2960 2440 2360 93 7 0 chr1 49385974 49386274 -232807390 + AluY SINE Alu 1 302 -9 368 305 141 34 chr1 49386452 49386629 -232807035 - L1ME4a LINE L1 -47 6074 5879 964 152 0 84 chr1 49386632 49386823 -232806841 - AluSg/x SINE Alu -1 311 137 2430 83 0 17 chr1 49386824 49387126 -232806538 - AluSx SINE Alu -15 297 1 298 205 39 0 chr1 49387298 49387376 -232806288 - L1ME3 LINE L1 -2 6160 6080 432 304 159 24 chr1 49389919 49390126 -232803538 - MIR SINE MIR -6 256 22 21 36 0 0 chr1 49390126 49390154 -232803510 + AT_rich Low_complexity Low_complexity 1 28 0 2074 155 0 3 chr1 49390572 49390881 -232802783 - AluJb SINE Alu -4 308 1 337 267 68 41 chr1 49390998 49391144 -232802520 - MIR SINE MIR -13 249 100 1939 127 38 10 chr1 49391306 49391598 -232802066 - AluJb SINE Alu -12 300 1 298 205 39 0 chr1 49391770 49391848 -232801816 - L1ME3 LINE L1 -2 6160 6080 316 178 136 51 chr1 49392916 49393024 -232800640 - MER58C DNA MER1_type -2226 194 74 1106 139 12 17 chr1 49393024 49393197 -232800467 + FAM SINE Alu 1 172 -3 335 80 0 0 chr1 49395292 49395342 -232798322 - AluSx SINE Alu -7 293 244 1293 117 0 0 chr1 49395342 49395513 -232798151 - AluSx SINE Alu -141 171 1 484 334 137 48 chr1 49397979 49398440 -232795224 - L3 LINE CR1 -45 1532 1031 2322 103 3 0 chr1 49399200 49399500 -232794164 + AluSx SINE Alu 1 301 -11 230 357 114 7 chr1 49400075 49400215 -232793449 + L2 LINE L2 3115 3269 -3 226 295 129 81 chr1 49400468 49400950 -232792714 - L2 LINE L2 -452 2862 2358 1025 276 149 26 chr1 49401797 49402221 -232791443 - L2 LINE L2 -4 3309 2834 280 314 105 12 chr1 49403272 49403358 -232790306 + MIR SINE MIR 21 114 -148 1894 149 0 0 chr1 49403752 49404054 -232789610 - AluJb SINE Alu -10 302 1 1507 189 3 23 chr1 49404057 49404364 -232789300 - AluJo SINE Alu -11 301 1 240 273 40 30 chr1 49404373 49404472 -232789192 - MIR SINE MIR -13 249 150 936 175 114 49 chr1 49404472 49404689 -232788975 - Charlie1a DNA MER1_type -1313 1448 1246 2271 63 0 27 chr1 49404689 49404988 -232788676 - AluY SINE Alu -14 297 7 936 175 114 49 chr1 49404988 49405093 -232788571 - Charlie1a DNA MER1_type -1515 1246 1149 1573 177 7 7 chr1 49405093 49405392 -232788272 - AluJb SINE Alu -13 299 1 936 175 114 49 chr1 49405392 49405478 -232788186 - Charlie1a DNA MER1_type -1612 1149 958 875 127 146 6 chr1 49405529 49405687 -232787977 - AluJo SINE Alu -131 181 2 3499 194 101 39 chr1 49405687 49405892 -232787772 - Charlie1a DNA MER1_type -1796 965 774 2261 72 7 0 chr1 49405892 49406184 -232787480 - AluSc SINE Alu -15 294 1 3499 194 101 39 chr1 49406184 49406436 -232787228 - Charlie1a DNA MER1_type -1987 774 539 1576 133 29 57 chr1 49406436 49406752 -232786912 - AluJb SINE Alu -5 307 1 3499 194 101 39 chr1 49406752 49407201 -232786463 - Charlie1a DNA MER1_type -2222 539 1 1778 119 0 0 chr1 49407714 49407967 -232785697 + AluSx SINE Alu 1 253 -59 1835 88 0 0 chr1 49407967 49408207 -232785457 - AluY SINE Alu -71 240 1 252 86 0 0 chr1 49409736 49409771 -232783893 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 202 195 0 0 chr1 49412562 49412603 -232781061 + (CCG)n Simple_repeat Simple_repeat 2 42 0 35 63 0 0 chr1 49412720 49412783 -232780881 + GC_rich Low_complexity Low_complexity 1 63 0 1410 155 52 65 chr1 49414349 49414598 -232779066 - AluJo SINE Alu -7 305 59 1622 69 9 26 chr1 49414598 49414831 -232778833 + AluSq SINE Alu 75 303 -10 1410 155 52 65 chr1 49414831 49414890 -232778774 - AluJo SINE Alu -253 59 1 216 349 25 92 chr1 49414930 49415060 -232778604 + L2 LINE L2 2431 2539 -775 1962 136 0 0 chr1 49415060 49415347 -232778317 - AluSx SINE Alu -25 287 1 216 349 25 92 chr1 49415347 49415454 -232778210 + L2 LINE L2 2539 2652 -662 1244 277 38 30 chr1 49416090 49416483 -232777181 - MLT1I LTR MaLR -12 397 2 674 248 144 10 chr1 49416976 49417178 -232776486 + MIR SINE MIR 15 243 -19 537 295 89 78 chr1 49417392 49417971 -232775693 - L2 LINE L2 -6 3266 2687 366 298 76 29 chr1 49418171 49418342 -232775322 + MIR SINE MIR 36 214 -48 1717 153 0 32 chr1 49418488 49418801 -232774863 - AluJb SINE Alu -9 303 1 2190 100 0 7 chr1 49418947 49419248 -232774416 + AluSq SINE Alu 1 299 -14 1933 103 3 58 chr1 49419272 49419583 -232774081 + AluSx SINE Alu 2 295 -17 558 187 90 13 chr1 49419953 49420106 -232773558 - Charlie7 DNA MER1_type -535 2077 1913 398 231 58 8 chr1 49420106 49420227 -232773437 - Charlie1 DNA MER1_type -1 2760 2634 1892 144 0 7 chr1 49420257 49420555 -232773109 + AluJb SINE Alu 1 296 -16 1185 165 10 0 chr1 49420558 49420758 -232772906 + AluJo SINE Alu 86 287 -25 1086 208 27 18 chr1 49420759 49420980 -232772684 - Charlie1 DNA MER1_type -2538 223 1 841 231 93 84 chr1 49420980 49421430 -232772234 - Charlie7 DNA MER1_type -694 1918 1465 570 72 205 0 chr1 49421434 49421517 -232772147 + U6 snRNA snRNA 3 102 -5 368 260 63 24 chr1 49421601 49421728 -232771936 - Charlie7 DNA MER1_type -2330 282 151 266 326 151 12 chr1 49421853 49422025 -232771639 + L2 LINE L2 2605 2800 -514 1803 149 3 37 chr1 49422451 49422773 -232770891 - AluJb SINE Alu -1 311 1 2287 86 0 10 chr1 49422837 49423138 -232770526 - AluSp SINE Alu -15 298 1 2411 63 0 0 chr1 49423151 49423451 -232770213 - AluY SINE Alu -8 303 4 23 0 0 0 chr1 49423487 49423510 -232770154 + AT_rich Low_complexity Low_complexity 1 23 0 2188 121 0 0 chr1 49423645 49423952 -232769712 - AluSx SINE Alu -5 307 1 353 176 56 70 chr1 49424089 49424231 -232769433 - LTR41 LTR ERVL -6 767 628 468 252 19 0 chr1 49424233 49424340 -232769324 + L1MB8 LINE L1 5395 5503 -677 1945 117 7 13 chr1 49424344 49424642 -232769022 + AluSq SINE Alu 1 296 -17 2018 98 0 0 chr1 49424653 49424927 -232768737 + AluSx SINE Alu 39 312 0 1384 189 55 0 chr1 49424934 49425209 -232768455 + AluJb SINE Alu 9 298 -14 1591 143 51 98 chr1 49425210 49425360 -232768304 + L1MB8 LINE L1 5494 5650 -528 1926 158 102 11 chr1 49425360 49425722 -232767942 - MSTD LTR MaLR 0 396 2 1591 143 51 98 chr1 49425722 49425927 -232767737 + L1MB8 LINE L1 5650 5832 -346 1821 160 6 6 chr1 49425927 49426239 -232767425 + AluJo SINE Alu 1 312 0 2318 88 3 0 chr1 49426260 49426568 -232767096 - AluSp SINE Alu -4 309 1 1991 115 17 0 chr1 49426569 49426864 -232766800 - AluSq SINE Alu -13 300 1 928 301 135 58 chr1 49426908 49427869 -232765795 - L2 LINE L2 -2 3270 2232 2063 145 84 24 chr1 49427876 49428078 -232765586 + MSTB1 LTR MaLR 5 193 -239 2263 95 0 0 chr1 49428078 49428373 -232765291 - AluSx SINE Alu -17 295 1 2063 145 84 24 chr1 49428373 49428549 -232765115 + MSTB1 LTR MaLR 193 406 -26 2179 117 0 0 chr1 49428576 49428876 -232764788 - AluSx SINE Alu -12 300 1 201 191 71 0 chr1 49429037 49429079 -232764585 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1460 161 0 29 chr1 49429167 49429463 -232764201 - AluJb SINE Alu 0 308 21 244 288 30 0 chr1 49429671 49429737 -232763927 - L2 LINE L2 -208 3064 2997 238 333 54 27 chr1 49429792 49429939 -232763725 - L2 LINE L2 -1357 1957 1807 1945 122 26 0 chr1 49430158 49430462 -232763202 - AluSq SINE Alu -1 312 1 25 0 0 0 chr1 49430597 49430622 -232763042 + AT_rich Low_complexity Low_complexity 1 25 0 1772 160 7 0 chr1 49430622 49430909 -232762755 - AluJb SINE Alu -23 289 1 395 207 0 23 chr1 49431064 49431151 -232762513 - L1MD3 LINE L1 -10 7985 7901 862 186 66 45 chr1 49431154 49431247 -232762417 - L1MC4 LINE L1 -686 7356 7266 1751 181 0 0 chr1 49431247 49431551 -232762113 - AluJo SINE Alu -8 304 1 1956 141 3 0 chr1 49431560 49431858 -232761806 - AluSx SINE Alu -13 299 1 862 186 66 45 chr1 49431858 49432260 -232761404 - L1MC4 LINE L1 -783 7259 6806 2137 126 14 6 chr1 49432838 49433187 -232760477 - L1PA16 LINE L1 -9 6157 5806 306 133 0 0 chr1 49433188 49433233 -232760431 - L1MC4 LINE L1 -1223 6819 6775 625 117 0 0 chr1 49433234 49433328 -232760336 + AluSp/q SINE Alu 214 307 -6 307 333 11 0 chr1 49433332 49433422 -232760242 - L1MC4a LINE L1 -1109 6699 6609 1554 164 0 22 chr1 49433431 49433700 -232759964 + AluJo SINE Alu 5 267 -45 351 247 21 21 chr1 49433769 49433866 -232759798 - L1MCa LINE L1 -4351 2075 1979 999 183 0 0 chr1 49433868 49434043 -232759621 - AluJb SINE Alu -26 286 112 1673 150 48 14 chr1 49434048 49434342 -232759322 - AluJb SINE Alu -6 306 3 649 194 18 12 chr1 49434343 49434508 -232759156 - L1MC4 LINE L1 -1422 6620 6455 1056 228 117 28 chr1 49434638 49434962 -232758702 - L1MC4 LINE L1 -1983 5825 5473 1521 188 83 0 chr1 49435523 49435811 -232757853 - AluJo SINE Alu 0 312 1 1536 175 9 83 chr1 49435996 49436174 -232757490 - AluJb SINE Alu -1 301 156 2050 108 0 16 chr1 49436174 49436343 -232757321 - AluY SINE Alu -11 300 137 2342 57 0 41 chr1 49436343 49436661 -232757003 - AluY SINE Alu -6 305 1 2050 108 0 16 chr1 49436661 49436796 -232756868 - AluY SINE Alu -174 137 1 1536 175 9 83 chr1 49436796 49436942 -232756722 - AluJb SINE Alu -146 156 1 323 219 31 70 chr1 49437000 49437128 -232756536 - L1MC4a LINE L1 -1897 5911 5789 1302 263 72 41 chr1 49437136 49437619 -232756045 + LTR33 LTR ERVL 21 518 -3 537 315 33 12 chr1 49437634 49437875 -232755789 - L1MC4a LINE L1 -338 5783 5538 1476 132 7 78 chr1 49437945 49438226 -232755438 - AluJo SINE Alu -12 300 40 346 276 81 86 chr1 49438500 49438800 -232754864 - L1MC4a LINE L1 -1316 4830 4530 2062 71 20 34 chr1 49438800 49439094 -232754570 + AluSg SINE Alu 3 292 -18 346 276 81 86 chr1 49439094 49439259 -232754405 - L1MC4a LINE L1 -1616 4530 4366 1885 162 0 16 chr1 49439259 49439574 -232754090 - AluJb SINE Alu -2 310 1 346 276 81 86 chr1 49439574 49439802 -232753862 - L1MC4a LINE L1 -1780 4366 4140 289 319 142 39 chr1 49439963 49440148 -232753516 - L2 LINE L2 -377 2937 2773 2665 202 63 20 chr1 49440148 49440748 -232752916 + MLT1E2 LTR MaLR 1 626 0 289 319 142 39 chr1 49440748 49441054 -232752610 - L2 LINE L2 -541 2773 2395 447 304 159 24 chr1 49442800 49443007 -232750657 - MIR SINE MIR -6 256 22 21 36 0 0 chr1 49443007 49443035 -232750629 + AT_rich Low_complexity Low_complexity 1 28 0 1922 155 0 3 chr1 49443453 49443762 -232749902 - AluJb SINE Alu -4 308 1 344 267 68 41 chr1 49443879 49444025 -232749639 - MIR SINE MIR -13 249 100 1718 151 38 10 chr1 49444187 49444479 -232749185 - AluJb SINE Alu -12 300 1 29 0 0 0 chr1 49444931 49444960 -232748704 + AT_rich Low_complexity Low_complexity 1 29 0 1951 70 88 4 chr1 49445046 49445318 -232748346 + AluSc SINE Alu 1 295 -14 25 0 0 0 chr1 49445435 49445460 -232748204 + AT_rich Low_complexity Low_complexity 1 25 0 1316 200 0 88 chr1 49445469 49445809 -232747855 + AluJo SINE Alu 2 311 -1 507 215 0 0 chr1 49445809 49445930 -232747734 + GA-rich Low_complexity Low_complexity 2 122 0 1712 145 0 34 chr1 49446009 49446306 -232747358 + AluJo SINE Alu 1 287 -25 608 342 35 33 chr1 49446626 49447053 -232746611 + L1MEc LINE L1 40 467 -5929 677 264 140 24 chr1 49447476 49447853 -232745811 + L1MEc LINE L1 585 917 -5298 1670 61 37 0 chr1 49447853 49448067 -232745597 + AluSc SINE Alu 72 293 -16 677 264 140 24 chr1 49448067 49448306 -232745358 + L1MEc LINE L1 917 1398 -4817 2019 106 32 0 chr1 49449219 49449503 -232744161 - AluSx SINE Alu -18 294 2 525 86 0 0 chr1 49449549 49449671 -232743993 + AluY SINE Alu 215 336 0 1829 130 50 13 chr1 49449683 49449984 -232743680 + AluSx SINE Alu 1 312 0 456 110 164 0 chr1 49449993 49450066 -232743598 + AluS SINE Alu 14 98 -214 529 298 28 18 chr1 49450070 49450288 -232743376 + L1MEc LINE L1 1764 1983 -4413 328 204 32 11 chr1 49450382 49450475 -232743189 + L1MEc LINE L1 1997 2091 -4305 922 141 14 84 chr1 49450482 49450608 -232743056 + MER7A DNA MER2_type 1 134 -2904 1788 162 0 0 chr1 49450608 49450892 -232742772 - AluSx SINE Alu -28 284 1 922 141 14 84 chr1 49450892 49451052 -232742612 + MER7A DNA MER2_type 134 345 -1 1876 150 34 26 chr1 49451095 49451426 -232742238 + L1MB3 LINE L1 5798 6125 -58 2360 84 0 0 chr1 49451426 49451725 -232741939 - AluY SINE Alu -12 299 1 1980 120 7 13 chr1 49451728 49452029 -232741635 - AluSx SINE Alu -13 299 1 1876 150 34 26 chr1 49452029 49452073 -232741591 + L1MB3 LINE L1 6126 6180 -3 2103 98 0 14 chr1 49452091 49452386 -232741278 + AluSg SINE Alu 1 291 -19 1459 223 122 57 chr1 49452387 49452525 -232741139 - MER21B LTR ERV1 -418 445 317 2165 94 0 44 chr1 49452525 49452844 -232740820 - AluSx SINE Alu -7 305 1 1459 223 122 57 chr1 49452844 49453123 -232740541 - MER21B LTR ERV1 -546 317 1 2138 192 118 121 chr1 49453123 49453387 -232740277 + L1ME LINE L1 4308 4571 -1575 1592 174 33 13 chr1 49453387 49453686 -232739978 - AluJb SINE Alu -7 305 1 402 159 0 80 chr1 49453692 49453780 -232739884 - AluJb SINE Alu -176 136 56 2138 192 118 121 chr1 49453780 49454449 -232739215 + L1ME LINE L1 4576 5328 -818 612 146 19 10 chr1 49454450 49454553 -232739111 + FLAM_C SINE Alu 33 136 -7 1615 213 93 21 chr1 49454564 49454632 -232739032 + L1ME LINE L1 5317 5379 -785 1405 182 5 132 chr1 49454632 49455050 -232738614 + MLT1A1 LTR MaLR 1 365 0 1615 213 93 21 chr1 49455050 49455409 -232738255 + L1ME LINE L1 5379 5775 -389 1371 168 77 42 chr1 49455571 49455857 -232737807 + AluJo SINE Alu 1 296 -16 547 273 157 42 chr1 49455966 49456512 -232737152 + L1MC4a LINE L1 5255 5818 -303 2074 107 23 0 chr1 49456780 49457080 -232736584 - AluSq SINE Alu -6 307 1 371 221 105 58 chr1 49457083 49457255 -232736409 - MIR SINE MIR -13 249 70 1664 148 38 14 chr1 49457466 49457757 -232735907 - AluJb SINE Alu -14 298 1 1946 137 3 10 chr1 49459157 49459450 -232734214 - AluSx SINE Alu -16 296 6 1154 191 133 4 chr1 49459669 49459910 -232733754 + AluJb SINE Alu 32 303 -9 819 309 66 8 chr1 49459979 49460456 -232733208 + L1MB7 LINE L1 5127 5629 -537 229 227 120 0 chr1 49460713 49460788 -232732876 + L1ME1 LINE L1 5079 5162 -984 1676 155 18 25 chr1 49460808 49461092 -232732572 + AluJo SINE Alu 29 310 -2 797 288 83 9 chr1 49461115 49461441 -232732223 + L1ME1 LINE L1 5812 6161 -5 201 74 0 0 chr1 49461512 49461539 -232732125 + (CA)n Simple_repeat Simple_repeat 2 28 0 3107 184 55 87 chr1 49461754 49461871 -232731793 + L1MC4a LINE L1 4441 4560 -1618 2143 121 3 3 chr1 49461871 49462169 -232731495 - AluSx SINE Alu -14 298 1 3107 184 55 87 chr1 49462169 49463092 -232730572 + L1MC4a LINE L1 4560 5449 -729 1822 165 3 7 chr1 49463226 49463511 -232730153 - AluJo SINE Alu -23 289 6 1641 175 6 54 chr1 49463709 49464023 -232729641 + AluJo SINE Alu 1 299 -13 378 0 0 0 chr1 49464030 49464072 -232729592 + (CA)n Simple_repeat Simple_repeat 1 42 0 2367 101 0 0 chr1 49464128 49464434 -232729230 + AluSg SINE Alu 1 306 -4 994 218 47 26 chr1 49464598 49464832 -232728832 + Charlie1a DNA MER1_type 105 343 -1112 429 158 184 0 chr1 49464847 49464923 -232728741 + FLAM_A SINE Alu 34 123 -19 2541 192 24 14 chr1 49464927 49465438 -232728226 + Charlie1a DNA MER1_type 353 868 -587 2292 92 0 3 chr1 49465438 49465732 -232727932 + AluY SINE Alu 1 293 -18 1438 158 35 50 chr1 49465732 49466049 -232727615 + L1MB7 LINE L1 5696 6007 -177 379 225 91 109 chr1 49466296 49466625 -232727039 + L1MC5 LINE L1 7608 7930 -31 2629 51 0 3 chr1 49466633 49466944 -232726720 + AluY SINE Alu 1 310 -1 1918 131 36 23 chr1 49466948 49467253 -232726411 + AluJo SINE Alu 1 309 -3 216 236 55 42 chr1 49467750 49467915 -232725749 - L2 LINE L2 -1113 2201 2035 1057 226 30 64 chr1 49467952 49468248 -232725416 + L1MC4a LINE L1 5603 5888 -1920 191 320 0 51 chr1 49468878 49468956 -232724708 + MIR SINE MIR 2 75 -187 1272 214 28 89 chr1 49469406 49469831 -232723833 - LTR16A LTR ERVL 0 450 52 23 54 0 0 chr1 49469960 49469997 -232723667 + AT_rich Low_complexity Low_complexity 1 37 0 747 232 50 89 chr1 49470020 49470400 -232723264 - MLT1J2 LTR MaLR -7 443 79 450 65 0 0 chr1 49470692 49470754 -232722910 + (TG)n Simple_repeat Simple_repeat 1 62 0 205 152 0 0 chr1 49470754 49470787 -232722877 + (CG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr1 49471372 49471400 -232722264 + AT_rich Low_complexity Low_complexity 1 28 0 320 296 99 12 chr1 49471942 49472104 -232721560 - L2 LINE L2 -508 2806 2631 2480 254 47 87 chr1 49472427 49472642 -232721022 + L1M4 LINE L1 2719 2941 -3205 1376 38 13 0 chr1 49472642 49472801 -232720863 + L1PA7 LINE L1 5994 6154 0 2480 254 47 87 chr1 49472801 49473120 -232720544 + L1M4 LINE L1 2941 3271 -2875 1772 174 0 20 chr1 49473120 49473424 -232720240 + AluJo SINE Alu 2 299 -13 2480 254 47 87 chr1 49473424 49474387 -232719277 + L1M4 LINE L1 3271 4158 -1988 193 346 13 0 chr1 49474575 49474653 -232719011 - MIR SINE MIR -8 254 176 517 98 0 33 chr1 49475158 49475250 -232718414 + (GGAGA)n Simple_repeat Simple_repeat 2 90 0 739 165 0 31 chr1 49475522 49475649 -232718015 - FLAM_A SINE Alu -4 138 16 286 265 15 15 chr1 49475743 49475811 -232717853 - L2 LINE L2 -2 3270 3203 225 300 44 22 chr1 49475862 49475952 -232717712 + L2 LINE L2 2757 2848 -466 2447 60 7 0 chr1 49476325 49476623 -232717041 - AluY SINE Alu -11 300 1 369 0 0 0 chr1 49476697 49476738 -232716926 + (TG)n Simple_repeat Simple_repeat 2 42 0 2189 85 6 63 chr1 49476997 49477314 -232716350 - AluSp SINE Alu -14 299 1 827 141 7 0 chr1 49477479 49477614 -232716050 - FRAM SINE Alu -1 175 40 2285 96 0 7 chr1 49477710 49478013 -232715651 - AluSc SINE Alu -8 301 1 479 253 109 53 chr1 49478396 49478520 -232715144 - L1MC4 LINE L1 -1 8041 7925 307 60 40 0 chr1 49478520 49478570 -232715094 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 479 253 109 53 chr1 49478570 49478730 -232714934 - L1MC4 LINE L1 -117 7925 7741 975 266 28 29 chr1 49478771 49479152 -232714512 + L1MC4 LINE L1 7271 7649 -163 317 270 0 0 chr1 49479745 49479808 -232713856 - L2 LINE L2 -6 3266 3204 607 178 74 80 chr1 49480156 49480200 -232713464 - Charlie8 DNA MER1_type -167 163 120 2236 114 3 0 chr1 49480200 49480499 -232713165 - AluSq SINE Alu -13 300 1 607 178 74 80 chr1 49480499 49480617 -232713047 - Charlie8 DNA MER1_type -210 120 2 21 36 0 0 chr1 49480788 49480816 -232712848 + AT_rich Low_complexity Low_complexity 1 28 0 3413 137 32 79 chr1 49480988 49481683 -232711981 - L1MB8 LINE L1 -5 6173 5512 438 280 47 10 chr1 49482087 49482280 -232711384 - L1MC5 LINE L1 -186 7775 7576 * 3284 136 39 0 chr1 49482270 49482806 -232710858 + L1PA11 LINE L1 4667 5223 -923 4648 83 34 3 chr1 49482806 49483410 -232710254 + L1PA11 LINE L1 5542 6173 -1 2653 45 0 6 chr1 49483600 49483913 -232709751 - AluY SINE Alu 0 311 1 2162 116 3 0 chr1 49483914 49484208 -232709456 - AluSq SINE Alu -18 295 1 303 282 14 14 chr1 49484270 49484341 -232709323 + MIR SINE MIR 35 105 -157 4537 228 106 35 chr1 49484346 49485917 -232707747 - HAL1 LINE L1 -1 2506 825 634 237 144 9 chr1 49485929 49486144 -232707520 - HAL1 LINE L1 -2169 338 95 853 205 51 79 chr1 49486205 49486291 -232707373 + MER58C DNA MER1_type 5 92 -2328 1915 134 10 17 chr1 49486291 49486589 -232707075 + AluSx SINE Alu 1 296 -16 853 205 51 79 chr1 49486589 49486717 -232706947 + MER58C DNA MER1_type 92 213 -2 204 319 42 42 chr1 49487006 49487172 -232706492 + L2 LINE L2 1851 2016 -1298 317 301 108 67 chr1 49487187 49487593 -232706071 + L2 LINE L2 2469 2891 -423 441 178 34 76 chr1 49487617 49487735 -232705929 - MIR SINE MIR 0 262 150 892 244 80 15 chr1 49487784 49488046 -232705618 + MER46C DNA MER2_type 59 337 -1 447 300 21 14 chr1 49488053 49488193 -232705471 - MIR SINE MIR -118 144 4 2401 103 0 0 chr1 49489193 49489505 -232704159 + AluSx SINE Alu 1 312 0 995 301 93 47 chr1 49490885 49491751 -232701913 + L2 LINE L2 2429 3312 -1 322 162 276 0 chr1 49493056 49493161 -232700503 - L1ME4a LINE L1 -18 6103 5970 357 352 82 48 chr1 49493636 49493906 -232699758 - L2 LINE L2 0 3272 2994 217 354 115 18 chr1 49494012 49494238 -232699426 - L2 LINE L2 -474 2840 2593 1180 175 58 0 chr1 49494242 49494482 -232699182 + L1MB7 LINE L1 5930 6183 -1 1585 195 0 23 chr1 49494555 49494857 -232698807 + AluJo SINE Alu 1 295 -17 271 324 27 0 chr1 49495172 49495246 -232698418 - L2 LINE L2 -58 3255 3180 2261 86 3 23 chr1 49495600 49495902 -232697762 - AluSc SINE Alu -13 296 1 552 306 83 55 chr1 49495995 49496380 -232697284 + L2 LINE L2 2909 3304 -9 273 29 0 0 chr1 49496384 49496418 -232697246 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 216 277 36 144 chr1 49498086 49498197 -232695467 - MIR SINE MIR -7 255 172 1693 118 0 0 chr1 49498197 49498435 -232695229 - L1MA3 LINE L1 0 6305 6068 216 277 36 144 chr1 49498435 49498518 -232695146 - MIR SINE MIR -90 172 82 2344 232 45 56 chr1 49498686 49498771 -232694893 + L1ME3A LINE L1 5127 5211 -959 1788 155 10 23 chr1 49498771 49499081 -232694583 + AluJo SINE Alu 5 310 -2 2344 232 45 56 chr1 49499081 49499841 -232693823 + L1ME3A LINE L1 5211 5956 -214 253 271 102 76 chr1 49500761 49500986 -232692678 + L1ME4a LINE L1 117 347 -6193 1039 269 123 42 chr1 49501498 49501868 -232691796 + L1ME4a LINE L1 930 1325 -5218 1802 138 7 56 chr1 49501868 49502173 -232691491 + AluJo SINE Alu 1 290 -22 1039 269 123 42 chr1 49502173 49502417 -232691247 + L1ME4a LINE L1 1325 1548 -4995 * 2137 228 107 10 chr1 49502414 49503023 -232690641 + L1ME4a LINE L1 4186 4853 -1687 1068 289 116 30 chr1 49503047 49503847 -232689817 + L2 LINE L2 2420 3309 -4 569 266 83 63 chr1 49503858 49504253 -232689411 + L1ME4a LINE L1 6112 6514 -1 2025 193 17 6 chr1 49504316 49504673 -232688991 - MLT1A1 LTR MaLR 0 365 5 317 261 218 12 chr1 49505576 49505741 -232687923 + MIR SINE MIR 58 256 -6 23 0 0 0 chr1 49506598 49506621 -232687043 + AT_rich Low_complexity Low_complexity 1 23 0 1557 122 6 145 chr1 49506638 49506999 -232686665 + AluJb SINE Alu 1 312 0 839 130 45 19 chr1 49507649 49507803 -232685861 + Charlie1 DNA MER1_type 1772 1929 -832 2242 110 23 0 chr1 49507890 49508190 -232685474 - AluSg SINE Alu -3 307 1 757 177 23 0 chr1 49508228 49508358 -232685306 + FLAM_A SINE Alu 1 133 0 183 80 0 0 chr1 49509778 49509803 -232683861 + (GGGAGA)n Simple_repeat Simple_repeat 5 29 0 274 157 72 60 chr1 49510043 49510126 -232683538 - LTR67 LTR ERVL -17 540 457 2302 103 7 0 chr1 49510699 49510999 -232682665 - AluSg SINE Alu -7 303 2 1859 160 0 7 chr1 49511661 49511955 -232681709 - AluJb SINE Alu -18 294 3 625 341 46 70 chr1 49511957 49512101 -232681563 - L2 LINE L2 -340 2974 2828 2246 88 3 0 chr1 49512101 49512435 -232681229 + AluSx SINE Alu 1 335 0 625 341 46 70 chr1 49512435 49513004 -232680660 - L2 LINE L2 -486 2828 2276 2213 110 0 7 chr1 49513004 49513304 -232680360 + AluSg SINE Alu 1 298 -12 625 341 46 70 chr1 49513304 49513347 -232680317 - L2 LINE L2 -1038 2276 2234 3415 219 128 31 chr1 49513453 49514402 -232679262 + L1MEc LINE L1 100 955 -5441 1830 154 20 10 chr1 49514402 49514694 -232678970 + AluJo SINE Alu 1 295 -17 2426 97 7 0 chr1 49514695 49515005 -232678659 + AluSx SINE Alu 1 312 0 3415 219 128 31 chr1 49515005 49515224 -232678440 + L1MEc LINE L1 954 1384 -5012 221 143 24 0 chr1 49517078 49517120 -232676544 - L2 LINE L2 -7 3306 3264 936 228 113 92 chr1 49517138 49517478 -232676186 + Charlie8 DNA MER1_type 49 380 -2037 1516 187 4 15 chr1 49517478 49517746 -232675918 - AluJo SINE Alu -47 265 1 936 228 113 92 chr1 49517746 49517850 -232675814 + Charlie8 DNA MER1_type 380 480 -1937 201 74 0 0 chr1 49517850 49517877 -232675787 + (TG)n Simple_repeat Simple_repeat 1 27 0 936 228 113 92 chr1 49517877 49518032 -232675632 + Charlie8 DNA MER1_type 480 662 -1755 279 136 51 68 chr1 49518061 49518120 -232675544 + Charlie8 DNA MER1_type 1367 1424 -993 624 27 0 0 chr1 49518844 49518918 -232674746 + (CA)n Simple_repeat Simple_repeat 2 75 0 545 234 53 47 chr1 49520550 49520721 -232672943 + MIR SINE MIR 18 189 -73 489 17 0 0 chr1 49520863 49520921 -232672743 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 243 327 71 30 chr1 49522063 49522231 -232671433 + MIR SINE MIR 20 194 -68 972 98 0 33 chr1 49522341 49522359 -232671305 + (TTC)n Simple_repeat Simple_repeat 1 195 0 972 98 0 33 chr1 49522359 49522543 -232671121 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1044 114 0 22 chr1 49522709 49522893 -232670771 + (TCC)n Simple_repeat Simple_repeat 1 180 0 824 162 0 22 chr1 49522908 49523044 -232670620 - FLAM_C SINE Alu 0 133 1 403 218 117 46 chr1 49523044 49523223 -232670441 - L1MEd LINE L1 -4910 1462 1266 691 265 58 88 chr1 49523388 49523909 -232669755 + L1MEd LINE L1 527 1031 -5088 1484 206 20 49 chr1 49523917 49524113 -232669551 - MER58B DNA MER1_type -2080 340 157 2212 104 3 0 chr1 49524113 49524401 -232669263 - AluSp SINE Alu -23 290 2 1484 206 20 49 chr1 49524401 49524553 -232669111 - MER58B DNA MER1_type -2263 157 2 1785 134 46 0 chr1 49524654 49524937 -232668727 - L1PA16 LINE L1 -24 6142 5847 * 2996 201 15 0 chr1 49524933 49525545 -232668119 + L1P LINE L1 4603 5223 -923 287 287 139 16 chr1 49525803 49525932 -232667732 + MIR SINE MIR 15 159 -103 182 238 0 0 chr1 49526045 49526087 -232667577 - L2 LINE L2 0 3313 3272 428 310 98 22 chr1 49526298 49526482 -232667182 - L2 LINE L2 -2816 498 301 454 277 206 19 chr1 49526875 49527142 -232666522 - L2 LINE L2 -2 3311 2995 213 273 0 0 chr1 49527655 49527699 -232665965 - L2 LINE L2 -15 3257 3214 2400 259 95 17 chr1 49527726 49528787 -232664877 + L2 LINE L2 2172 3313 0 332 307 43 14 chr1 49528792 49528932 -232664732 - MIR SINE MIR -87 175 32 389 314 0 8 chr1 49529008 49529129 -232664535 + L2 LINE L2 3190 3309 -4 922 198 11 6 chr1 49529760 49529937 -232663727 - MER5B DNA MER1_type 0 178 1 388 269 28 19 chr1 49530055 49530163 -232663501 - MER5B DNA MER1_type -66 112 4 318 350 18 27 chr1 49530599 49530819 -232662845 - L2 LINE L2 -474 2840 2623 7813 194 41 50 chr1 49530819 49530993 -232662671 + L1MC4 LINE L1 3153 3327 -2819 1828 158 33 7 chr1 49530993 49531296 -232662368 + AluJo SINE Alu 1 311 -1 7813 194 41 50 chr1 49531296 49532532 -232661132 + L1MC4 LINE L1 3327 4086 -2060 1707 149 38 35 chr1 49532532 49532821 -232660843 - AluJb SINE Alu -22 290 1 7813 194 41 50 chr1 49532821 49534120 -232659544 + L1MC4 LINE L1 4086 5395 -751 245 254 254 21 chr1 49534186 49534375 -232659289 + MIR SINE MIR 25 257 -5 217 143 0 24 chr1 49534490 49534532 -232659132 + L2 LINE L2 2718 2758 -556 300 368 0 0 chr1 49534595 49534712 -232658952 + L2 LINE L2 2866 2982 -290 1652 135 20 106 chr1 49535005 49535346 -232658318 - AluJb SINE Alu 0 312 1 247 240 192 24 chr1 49536043 49536168 -232657496 - MIR SINE MIR -76 186 41 466 277 49 49 chr1 49538456 49538680 -232654984 - MIR SINE MIR -5 257 34 1109 274 87 26 chr1 49538905 49538972 -232654692 + L2 LINE L2 1534 1596 -1718 1604 121 0 0 chr1 49538972 49539195 -232654469 + AluSg/x SINE Alu 83 305 -5 1109 274 87 26 chr1 49539195 49539657 -232654007 + L2 LINE L2 1596 2095 -1219 319 288 153 0 chr1 49541001 49541171 -232652493 + MIR SINE MIR 17 212 -50 233 247 14 14 chr1 49541444 49541517 -232652147 - L2 LINE L2 -20 3252 3180 273 276 102 0 chr1 49541854 49541952 -232651712 - MIR SINE MIR -61 147 40 452 270 53 119 chr1 49542048 49542367 -232651297 - L2 LINE L2 -30 3242 2945 867 142 0 8 chr1 49542700 49542827 -232650837 + FLAM_C SINE Alu 2 127 -6 1278 28 0 0 chr1 49543007 49543151 -232650513 + AluY SINE Alu 163 306 -5 2565 145 7 39 chr1 49544654 49545037 -232648627 - MSTA LTR MaLR 0 428 59 2000 147 7 0 chr1 49545037 49545344 -232648320 - AluJb SINE Alu 0 312 4 2565 145 7 39 chr1 49545344 49545402 -232648262 - MSTA LTR MaLR -369 59 1 646 167 0 9 chr1 49545402 49545516 -232648148 - MSTA-int LTR MaLR 0 1651 1539 2693 33 0 0 chr1 49545518 49545825 -232647839 + MER11C LTR ERVK 765 1071 0 9298 174 12 1 chr1 49545827 49547353 -232646311 - MSTA-int LTR MaLR -107 1544 2 234 163 0 23 chr1 49547354 49547397 -232646267 - MSTA LTR MaLR 0 428 387 * 956 124 62 0 chr1 49547396 49547541 -232646123 + MSTA LTR MaLR 248 401 -27 2231 99 24 3 chr1 49547545 49547838 -232645826 + AluSc SINE Alu 1 299 -10 874 179 48 0 chr1 49547850 49548018 -232645646 - L1MEc LINE L1 -1200 5015 4840 2851 207 44 27 chr1 49548022 49548723 -232644941 - L1MEc LINE L1 -1913 4302 3590 3165 195 136 31 chr1 49548731 49549464 -232644200 - MER21B LTR ERV1 -11 852 43 319 294 0 0 chr1 49549469 49549537 -232644127 - MER21B LTR ERV1 -774 89 22 2362 55 0 51 chr1 49549549 49549860 -232643804 + AluY SINE Alu 1 295 -16 1934 161 16 0 chr1 49549998 49550302 -232643362 - AluSx SINE Alu -3 309 1 2967 238 75 23 chr1 49550322 49551486 -232642178 - L1MEc LINE L1 -2647 3568 2345 274 70 0 0 chr1 49551486 49551529 -232642135 + MADE1 DNA Mariner 1 43 -37 1319 187 0 0 chr1 49551615 49551818 -232641846 - AluJo SINE Alu -109 203 1 24 0 0 0 chr1 49551842 49551866 -232641798 + AT_rich Low_complexity Low_complexity 1 24 0 5279 149 32 10 chr1 49551867 49552827 -232640837 + L1MB2 LINE L1 5191 6168 -3 1785 259 33 70 chr1 49552844 49553309 -232640355 - L1MEc LINE L1 -4561 1835 1419 2458 82 3 19 chr1 49553309 49553625 -232640039 - AluSq SINE Alu -2 311 1 1785 259 33 70 chr1 49553625 49554089 -232639575 - L1MEc LINE L1 -4977 1419 940 326 242 53 61 chr1 49554155 49554287 -232639377 - L1M4 LINE L1 -1091 5055 4925 21 57 0 0 chr1 49554467 49554502 -232639162 + AT_rich Low_complexity Low_complexity 1 35 0 271 340 104 21 chr1 49557474 49557618 -232636046 + L2 LINE L2 3117 3272 0 713 296 19 19 chr1 49558311 49558527 -232635137 - MIR SINE MIR 0 262 47 1002 291 143 39 chr1 49559235 49560067 -232633597 + L2 LINE L2 1784 2702 -612 325 316 26 9 chr1 49560089 49560203 -232633461 - L2 LINE L2 -39 3274 3159 207 186 0 0 chr1 49560212 49560250 -232633414 - L2 LINE L2 -18 3294 3217 3068 144 33 70 chr1 49560283 49560348 -232633316 - Ricksha DNA DNA -13 3241 3175 2232 117 0 16 chr1 49560348 49560664 -232633000 + AluSx SINE Alu 1 311 -1 3068 144 33 70 chr1 49560664 49561339 -232632325 - Ricksha DNA DNA -79 3175 2604 377 245 203 28 chr1 49561341 49561484 -232632180 - MIR SINE MIR -80 182 15 197 203 78 16 chr1 49562306 49562370 -232631294 + MER5C DNA MER1_type 80 147 -177 269 224 17 0 chr1 49562370 49562428 -232631236 + AluYb8 SINE Alu 117 175 -133 587 193 47 20 chr1 49562461 49562491 -232631173 + MER5C DNA MER1_type 166 194 -130 1294 57 6 6 chr1 49562491 49562668 -232630996 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 2239 101 0 0 chr1 49562668 49562946 -232630718 - AluSx SINE Alu -34 278 1 587 193 47 20 chr1 49562946 49563064 -232630600 + MER5C DNA MER1_type 193 319 -5 218 154 0 0 chr1 49563112 49563151 -232630513 + MIR SINE MIR 99 137 -125 191 235 153 47 chr1 49564050 49564135 -232629529 - L2 LINE L2 -1045 2269 2176 1767 83 5 0 chr1 49564390 49564608 -232629056 + AluSg/x SINE Alu 83 301 -11 645 281 55 42 chr1 49566157 49566374 -232627290 + MIR SINE MIR 21 240 -22 27 0 0 0 chr1 49566593 49566620 -232627044 + AT_rich Low_complexity Low_complexity 1 27 0 2454 91 3 0 chr1 49566758 49567067 -232626597 + AluSp SINE Alu 1 310 -3 240 227 247 21 chr1 49567202 49567299 -232626365 + L2 LINE L2 2934 3052 -220 1891 158 0 27 chr1 49567637 49567934 -232625730 + AluJb SINE Alu 1 289 -23 278 284 239 0 chr1 49568058 49568167 -232625497 - L2 LINE L2 -1 3271 3137 2306 114 3 0 chr1 49569007 49569313 -232624351 + AluSq SINE Alu 1 307 -6 327 331 23 8 chr1 49569355 49569488 -232624176 - L2 LINE L2 -173 3099 2965 224 333 94 22 chr1 49569559 49569697 -232623967 - L2 LINE L2 -510 2804 2657 317 360 17 12 chr1 49569789 49569961 -232623703 - L2 LINE L2 -836 2478 2306 2569 50 0 7 chr1 49570031 49570329 -232623335 - AluY SINE Alu -15 296 1 249 330 105 77 chr1 49570505 49570714 -232622950 - L2 LINE L2 -20 3252 3038 188 309 101 71 chr1 49571204 49571313 -232622351 - L2 LINE L2 -154 3118 3001 1877 153 7 23 chr1 49571313 49571614 -232622050 + AluJb SINE Alu 6 301 -11 188 309 101 71 chr1 49571614 49571672 -232621992 - L2 LINE L2 -271 3001 2946 205 368 0 23 chr1 49571774 49571861 -232621803 - L2 LINE L2 -482 2832 2748 2289 99 0 0 chr1 49571861 49572153 -232621511 + AluSg SINE Alu 1 292 -18 1197 110 0 0 chr1 49572154 49572318 -232621346 - THE1B LTR MaLR -200 164 1 534 265 88 6 chr1 49572401 49572571 -232621093 - L2 LINE L2 -923 2391 2208 300 212 0 0 chr1 49572738 49572804 -232620860 + Charlie8 DNA MER1_type 2341 2406 -11 283 285 88 40 chr1 49572949 49573223 -232620441 + L1ME LINE L1 5563 5849 -272 267 277 101 8 chr1 49573337 49573456 -232620208 + L2 LINE L2 1891 2020 -1294 666 307 40 9 chr1 49574155 49574383 -232619281 - L3 LINE CR1 -124 1453 1219 213 338 50 62 chr1 49574719 49574879 -232618785 - L3 LINE CR1 -808 769 612 415 298 69 21 chr1 49575068 49575256 -232618408 + MIR SINE MIR 20 216 -46 202 206 44 12 chr1 49576504 49576664 -232617000 + (GGATG)n Simple_repeat Simple_repeat 1 165 0 442 217 46 17 chr1 49576692 49576946 -232616718 + (GGATG)n Simple_repeat Simple_repeat 1 261 0 358 285 30 12 chr1 49576984 49577149 -232616515 + G-rich Low_complexity Low_complexity 6 173 0 427 333 0 0 chr1 49577212 49577374 -232616290 + G-rich Low_complexity Low_complexity 1 162 0 364 235 12 0 chr1 49577544 49577629 -232616035 - MIR SINE MIR -44 218 133 * 5181 249 149 39 chr1 49577626 49578509 -232615155 - L2 LINE L2 -3 3310 2526 2116 140 0 19 chr1 49578509 49578839 -232614825 + AluSx SINE Alu 1 312 0 5181 249 149 39 chr1 49578839 49579122 -232614542 - L2 LINE L2 -787 2526 2276 533 271 23 0 chr1 49579122 49579251 -232614413 + MER94 DNA DNA 2 133 -1 5181 249 149 39 chr1 49579251 49580421 -232613243 - L2 LINE L2 -1037 2276 734 2078 107 82 23 chr1 49580461 49580815 -232612849 + THE1C LTR MaLR 1 375 0 333 0 0 0 chr1 49580904 49580941 -232612723 + (TTC)n Simple_repeat Simple_repeat 2 38 0 1850 169 16 3 chr1 49580945 49581252 -232612412 - AluJb SINE Alu -1 311 1 246 278 159 48 chr1 49581825 49581951 -232611713 - L2 LINE L2 0 3272 3133 429 328 66 5 chr1 49582464 49582662 -232611002 - L2 LINE L2 -890 2424 2215 755 252 100 19 chr1 49582982 49583291 -232610373 - MLT1D LTR MaLR -68 437 104 695 256 168 15 chr1 49583292 49583709 -232609955 - L2 LINE L2 -107 3206 2745 810 294 129 31 chr1 49583822 49584605 -232609059 - L2 LINE L2 -6 3307 2450 237 172 62 47 chr1 49584664 49584728 -232608936 - L2 LINE L2 -818 2496 2432 189 229 0 0 chr1 49585112 49585147 -232608517 - L2 LINE L2 -13 3259 3225 247 305 165 36 chr1 49585333 49585782 -232607882 + L2 LINE L2 1426 1932 -1382 334 271 68 17 chr1 49585785 49585903 -232607761 + MIR SINE MIR 139 262 0 304 299 134 24 chr1 49585937 49585997 -232607667 + L2 LINE L2 3116 3168 -104 2433 99 0 0 chr1 49585997 49586299 -232607365 - AluSx SINE Alu -10 302 1 304 299 134 24 chr1 49586299 49586365 -232607299 + L2 LINE L2 3168 3256 -16 415 343 129 20 chr1 49586976 49587416 -232606248 - L2 LINE L2 -13 3259 2762 907 193 99 15 chr1 49587594 49587796 -232605868 - MER58A DNA MER1_type -2 222 4 1900 148 0 24 chr1 49587928 49588266 -232605398 - AluJo SINE Alu 0 331 1 299 242 133 8 chr1 49588268 49588388 -232605276 - MLT1K LTR MaLR -366 222 88 231 309 134 54 chr1 49589003 49589152 -232604512 + L2 LINE L2 3146 3306 -7 1927 105 52 37 chr1 49590893 49591096 -232602568 + L1MA5A LINE L1 5963 6174 -123 2324 101 0 3 chr1 49591096 49591394 -232602270 + AluSx SINE Alu 1 297 -15 1927 105 52 37 chr1 49591394 49591515 -232602149 + L1MA5A LINE L1 6174 6292 -5 243 0 0 0 chr1 49591840 49591867 -232601797 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 264 329 51 0 chr1 49593176 49593334 -232600330 + L1MC4a LINE L1 4982 5147 -999 183 42 0 0 chr1 49593336 49593360 -232600304 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1913 221 99 42 chr1 49593547 49594201 -232599463 + L1MC4a LINE L1 5265 5965 -1843 324 0 0 0 chr1 49594201 49594237 -232599427 + (CA)n Simple_repeat Simple_repeat 2 37 0 1913 221 99 42 chr1 49594237 49594298 -232599366 + L1MC4a LINE L1 5965 6021 -1787 524 311 94 78 chr1 49594303 49594762 -232598902 + L1MC4a LINE L1 6057 6522 -1286 1261 189 5 0 chr1 49594922 49595128 -232598536 + AluJo SINE Alu 85 291 -21 693 168 37 104 chr1 49595128 49595425 -232598239 + L1MC5 LINE L1 7651 7927 -34 1708 166 0 36 chr1 49595595 49595872 -232597792 + AluJo SINE Alu 1 267 -45 253 289 36 0 chr1 49595874 49595957 -232597707 + L1MC5 LINE L1 7360 7445 -516 1520 180 40 108 chr1 49596007 49596291 -232597373 + L1MC5 LINE L1 6649 6884 -1077 2322 116 3 0 chr1 49596291 49596601 -232597063 + AluSq SINE Alu 1 311 -2 1520 180 40 108 chr1 49596601 49596837 -232596827 + L1MC5 LINE L1 6884 7134 -827 247 191 0 0 chr1 49596839 49596886 -232596778 + L1MC5 LINE L1 7181 7227 -734 2142 112 3 10 chr1 49596952 49597246 -232596418 - AluSx SINE Alu -20 292 1 905 162 0 0 chr1 49597268 49597404 -232596260 - AluJb SINE Alu -19 293 158 316 161 138 35 chr1 49597481 49597568 -232596096 + L1ME4a LINE L1 5985 6080 -41 1586 140 87 19 chr1 49599629 49599925 -232593739 - AluJb SINE Alu 0 314 1 242 342 25 0 chr1 49599958 49600037 -232593627 - L2 LINE L2 -47 3225 3145 521 304 61 6 chr1 49600408 49600589 -232593075 + MIR SINE MIR 6 196 -66 193 303 159 20 chr1 49601109 49601304 -232592360 + L2 LINE L2 1750 1971 -1343 305 314 100 52 chr1 49601332 49601561 -232592103 - L1ME3 LINE L1 -1 6161 5922 1916 148 3 3 chr1 49601563 49601846 -232591818 - AluJb SINE Alu -27 285 3 26 0 0 0 chr1 49601869 49601895 -232591769 + AT_rich Low_complexity Low_complexity 1 26 0 218 54 0 54 chr1 49601937 49601974 -232591690 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 432 335 48 35 chr1 49601991 49602307 -232591357 - L1ME3 LINE L1 -302 5868 5549 354 346 160 0 chr1 49602309 49602497 -232591167 - MIR SINE MIR -44 218 1 1855 79 91 0 chr1 49804951 49805216 -232388448 - AluY SINE Alu -22 289 1 1888 129 89 4 chr1 49805216 49805496 -232388168 - AluSc SINE Alu -5 304 1 229 163 0 0 chr1 49805496 49805539 -232388125 - MER53 DNA DNA -133 56 14 255 136 136 71 chr1 49806627 49806767 -232386897 + AluSg/x SINE Alu 143 291 -9 359 262 93 47 chr1 49806964 49807169 -232386495 - L1MC5 LINE L1 -32 7929 7706 2311 86 20 10 chr1 49807169 49807472 -232386192 + AluSp SINE Alu 1 306 -7 359 262 93 47 chr1 49807472 49807545 -232386119 - L1MC5 LINE L1 -255 7706 7638 829 255 132 26 chr1 49807763 49808104 -232385560 - L2 LINE L2 -2662 652 276 349 235 12 0 chr1 49808730 49808815 -232384849 - MIR SINE MIR -44 218 133 * 3447 250 161 43 chr1 49808812 49809695 -232383969 - L2 LINE L2 -3 3310 2532 2122 140 0 19 chr1 49809695 49810025 -232383639 + AluSx SINE Alu 1 312 0 3447 250 161 43 chr1 49810025 49810308 -232383356 - L2 LINE L2 -781 2532 2284 496 271 23 0 chr1 49810308 49810437 -232383227 + MER94 DNA DNA 2 133 -1 3447 250 161 43 chr1 49810437 49811439 -232382225 - L2 LINE L2 -1029 2284 881 1517 98 137 27 chr1 49811568 49811904 -232381760 + THE1C LTR MaLR 3 375 0 333 0 0 0 chr1 49811993 49812030 -232381634 + (TTC)n Simple_repeat Simple_repeat 2 38 0 1762 171 23 3 chr1 49812034 49812339 -232381325 - AluJb SINE Alu -1 311 1 981 305 138 17 chr1 49813235 49813888 -232379776 + L2 LINE L2 1784 2515 -799 300 316 26 9 chr1 49814089 49814203 -232379461 - L2 LINE L2 -39 3274 3159 196 176 0 0 chr1 49814213 49814247 -232379417 - L2 LINE L2 -19 3294 3261 3082 142 33 70 chr1 49814283 49814348 -232379316 - Ricksha DNA DNA -13 3233 3167 2278 111 0 16 chr1 49814348 49814664 -232379000 + AluSx SINE Alu 1 311 -1 3082 142 33 70 chr1 49814664 49815339 -232378325 - Ricksha DNA DNA -79 3167 2596 344 252 203 28 chr1 49815341 49815484 -232378180 - MIR SINE MIR -80 182 15 189 203 78 16 chr1 49816306 49816370 -232377294 + MER5C DNA MER1_type 80 147 -177 278 224 17 0 chr1 49816370 49816428 -232377236 + AluYb8 SINE Alu 117 175 -133 565 193 47 20 chr1 49816461 49816491 -232377173 + MER5C DNA MER1_type 166 194 -130 1216 69 6 6 chr1 49816491 49816664 -232377000 + (TTCC)n Simple_repeat Simple_repeat 4 176 0 2275 97 0 0 chr1 49816664 49816942 -232376722 - AluSx SINE Alu -34 278 1 565 193 47 20 chr1 49816942 49817060 -232376604 + MER5C DNA MER1_type 193 319 -5 209 154 0 0 chr1 49817108 49817147 -232376517 + MIR SINE MIR 99 137 -125 1752 87 5 0 chr1 49818307 49818525 -232375139 + AluSg/x SINE Alu 81 299 -11 515 316 105 25 chr1 49822410 49822733 -232370931 - L2 LINE L2 0 3272 2924 188 65 0 32 chr1 49823044 49823075 -232370589 + (TCC)n Simple_repeat Simple_repeat 3 32 0 289 366 52 24 chr1 49823352 49823565 -232370099 + MIR SINE MIR 1 219 -43 197 343 82 34 chr1 49824019 49824165 -232369499 + L2 LINE L2 355 507 -2807 455 235 0 6 chr1 49824319 49824481 -232369183 + CT-rich Low_complexity Low_complexity 3 163 0 624 210 0 7 chr1 49824501 49824783 -232368881 + CT-rich Low_complexity Low_complexity 1 279 0 704 209 36 7 chr1 49824886 49825055 -232368609 - MIR SINE MIR -54 208 37 274 305 0 0 chr1 49825174 49825256 -232368408 - MIR SINE MIR -34 228 147 225 333 0 0 chr1 49826133 49826193 -232367471 - L2 LINE L2 -10 3262 3203 210 314 59 63 chr1 49826210 49826465 -232367199 + L2 LINE L2 2437 2692 -622 698 195 54 32 chr1 49826465 49826650 -232367014 + MER5A DNA MER1_type 1 189 0 210 314 59 63 chr1 49826650 49826732 -232366932 + L2 LINE L2 2692 2773 -541 2249 106 3 17 chr1 49826732 49827034 -232366630 - AluSx SINE Alu -14 298 1 210 314 59 63 chr1 49827034 49827087 -232366577 + L2 LINE L2 2773 2890 -424 208 241 19 19 chr1 49828263 49828317 -232365347 + CT-rich Low_complexity Low_complexity 1 54 0 1771 83 5 0 chr1 49829906 49830124 -232363540 + AluSg/x SINE Alu 83 301 -11 600 281 55 42 chr1 49831673 49831890 -232361774 + MIR SINE MIR 21 240 -22 27 0 0 0 chr1 49832109 49832136 -232361528 + AT_rich Low_complexity Low_complexity 1 27 0 2424 97 3 0 chr1 49832274 49832583 -232361081 + AluSp SINE Alu 1 310 -3 242 184 0 20 chr1 49832766 49832815 -232360849 + L2 LINE L2 3005 3052 -220 1902 159 0 24 chr1 49833153 49833449 -232360215 + AluJb SINE Alu 1 289 -23 254 284 239 0 chr1 49833573 49833682 -232359982 - L2 LINE L2 -1 3271 3137 2319 114 3 0 chr1 49834522 49834828 -232358836 + AluSq SINE Alu 1 307 -6 297 331 23 8 chr1 49834870 49835003 -232358661 - L2 LINE L2 -173 3099 2965 205 333 94 22 chr1 49835074 49835212 -232358452 - L2 LINE L2 -510 2804 2657 299 360 17 12 chr1 49835304 49835476 -232358188 - L2 LINE L2 -836 2478 2306 2574 50 0 7 chr1 49835546 49835843 -232357821 - AluY SINE Alu -16 295 1 200 336 99 76 chr1 49836017 49836228 -232357436 - L2 LINE L2 -19 3253 3038 1884 153 7 23 chr1 49836826 49837127 -232356537 + AluJb SINE Alu 6 301 -11 192 368 0 23 chr1 49837287 49837374 -232356290 - L2 LINE L2 -482 2832 2748 2301 99 0 0 chr1 49837374 49837666 -232355998 + AluSg SINE Alu 1 292 -18 1208 110 0 0 chr1 49837667 49837831 -232355833 - THE1B LTR MaLR -200 164 1 499 265 88 6 chr1 49837914 49838084 -232355580 - L2 LINE L2 -923 2391 2208 306 212 0 0 chr1 49838251 49838317 -232355347 + Charlie8 DNA MER1_type 2341 2406 -11 309 288 88 40 chr1 49838462 49838736 -232354928 + L1ME LINE L1 5563 5849 -272 243 286 101 8 chr1 49838850 49838969 -232354695 + L2 LINE L2 1891 2020 -1294 628 316 40 9 chr1 49839668 49839896 -232353768 - L3 LINE CR1 -124 1453 1219 191 331 50 62 chr1 49840232 49840392 -232353272 - L3 LINE CR1 -808 769 612 382 298 69 21 chr1 49840581 49840769 -232352895 + MIR SINE MIR 20 216 -46 325 258 0 45 chr1 49841929 49842061 -232351603 + G-rich Low_complexity Low_complexity 6 131 0 436 219 54 3 chr1 49842062 49842438 -232351226 + (GGATG)n Simple_repeat Simple_repeat 1 394 0 246 282 28 21 chr1 49842399 49842541 -232351123 + G-rich Low_complexity Low_complexity 6 148 0 * 195 162 0 0 chr1 49843286 49843323 -232350341 + G-rich Low_complexity Low_complexity 1 37 0 2393 278 116 8 chr1 49843915 49844772 -232348892 - L2 LINE L2 -1632 1682 734 1899 108 85 23 chr1 49844812 49845165 -232348499 + THE1C LTR MaLR 1 375 0 1862 168 16 10 chr1 49845255 49845595 -232348069 - AluJb SINE Alu 0 312 1 209 224 190 0 chr1 49846168 49846226 -232347438 - L2 LINE L2 0 3313 3245 386 318 71 10 chr1 49846807 49847005 -232346659 - L2 LINE L2 -890 2424 2215 798 275 91 10 chr1 49847325 49847634 -232346030 - MLT1D LTR MaLR -68 437 104 631 266 166 13 chr1 49847635 49848052 -232345612 - L2 LINE L2 -107 3206 2745 715 298 129 31 chr1 49848165 49848948 -232344716 - L2 LINE L2 -6 3307 2450 215 175 63 32 chr1 49849007 49849070 -232344594 - L2 LINE L2 -818 2496 2432 182 261 0 0 chr1 49849452 49849498 -232344166 - L2 LINE L2 -13 3259 3214 228 339 146 23 chr1 49849644 49850122 -232343542 + L2 LINE L2 1396 1932 -1382 319 305 51 0 chr1 49850125 49850243 -232343421 + MIR SINE MIR 139 262 0 274 299 134 24 chr1 49850277 49850337 -232343327 + L2 LINE L2 3116 3168 -104 2458 96 0 0 chr1 49850337 49850639 -232343025 - AluSx SINE Alu -10 302 1 274 299 134 24 chr1 49850639 49850705 -232342959 + L2 LINE L2 3168 3256 -16 208 171 0 0 chr1 49851315 49851350 -232342314 - L2 LINE L2 -13 3259 3225 352 359 35 25 chr1 49851441 49851755 -232341909 - L2 LINE L2 -184 3088 2762 835 193 99 15 chr1 49851933 49852135 -232341529 - MER58A DNA MER1_type -2 222 4 1890 149 0 24 chr1 49852267 49852596 -232341068 - AluJo SINE Alu 0 322 1 324 242 133 8 chr1 49852598 49852718 -232340946 - MLT1K LTR MaLR -366 222 88 206 302 134 54 chr1 49853333 49853482 -232340182 + L2 LINE L2 3146 3306 -7 1812 108 52 37 chr1 49855223 49855426 -232338238 + L1MA5A LINE L1 5963 6174 -123 2336 101 0 3 chr1 49855426 49855724 -232337940 + AluSx SINE Alu 1 297 -15 1812 108 52 37 chr1 49855724 49855845 -232337819 + L1MA5A LINE L1 6174 6292 -5 303 301 103 7 chr1 49855999 49856145 -232337519 - L2 LINE L2 -1426 1888 1729 243 0 0 0 chr1 49856170 49856197 -232337467 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 277 327 47 0 chr1 49857512 49857662 -232336002 + L1MC4a LINE L1 4991 5147 -999 183 42 0 0 chr1 49857664 49857688 -232335976 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1917 224 98 41 chr1 49857867 49858529 -232335135 + L1MC4a LINE L1 5257 5965 -1843 270 0 0 0 chr1 49858529 49858559 -232335105 + (CA)n Simple_repeat Simple_repeat 2 31 0 1917 224 98 41 chr1 49858559 49858620 -232335044 + L1MC4a LINE L1 5965 6021 -1787 520 314 93 79 chr1 49858641 49859084 -232334580 + L1MC4a LINE L1 6074 6522 -1286 1256 189 5 0 chr1 49859244 49859450 -232334214 + AluJo SINE Alu 85 291 -21 684 168 37 104 chr1 49859450 49859747 -232333917 + L1MC5 LINE L1 7651 7927 -34 1717 166 0 36 chr1 49859917 49860194 -232333470 + AluJo SINE Alu 1 267 -45 263 289 36 0 chr1 49860196 49860279 -232333385 + L1MC5 LINE L1 7360 7445 -516 1555 188 111 92 chr1 49860282 49860613 -232333051 + L1MC5 LINE L1 6616 6949 -1012 2325 116 3 0 chr1 49860613 49860923 -232332741 + AluSq SINE Alu 1 311 -2 1555 188 111 92 chr1 49860923 49861208 -232332456 + L1MC5 LINE L1 6949 7227 -734 2159 112 3 10 chr1 49861274 49861568 -232332096 - AluSx SINE Alu -20 292 1 910 162 0 0 chr1 49861590 49861726 -232331938 - AluJb SINE Alu -19 293 158 311 216 103 60 chr1 49861774 49861890 -232331774 + L1ME4a LINE L1 5960 6080 -41 1590 140 87 19 chr1 49863952 49864248 -232329416 - AluJb SINE Alu 0 314 1 222 342 25 0 chr1 49864281 49864360 -232329304 - L2 LINE L2 -47 3225 3145 484 304 61 6 chr1 49864731 49864912 -232328752 + MIR SINE MIR 6 196 -66 1924 148 3 3 chr1 49865838 49866121 -232327543 - AluJb SINE Alu -27 285 3 26 0 0 0 chr1 49866144 49866170 -232327494 + AT_rich Low_complexity Low_complexity 1 26 0 377 319 49 64 chr1 49866177 49866582 -232327082 - L1ME3A LINE L1 -223 5947 5549 318 351 160 0 chr1 49866584 49866772 -232326892 - MIR SINE MIR -44 218 1 515 316 105 25 chr1 49872082 49872405 -232321259 - L2 LINE L2 0 3272 2924 188 65 0 32 chr1 49872717 49872748 -232320916 + (TCC)n Simple_repeat Simple_repeat 3 32 0 301 361 52 24 chr1 49873025 49873238 -232320426 + MIR SINE MIR 1 219 -43 201 181 0 48 chr1 49873943 49874026 -232319638 + CT-rich Low_complexity Low_complexity 1 79 0 600 255 0 0 chr1 49874039 49874487 -232319177 + CT-rich Low_complexity Low_complexity 1 448 0 561 224 0 6 chr1 49874501 49874848 -232318816 + CT-rich Low_complexity Low_complexity 1 344 0 391 251 0 16 chr1 49874868 49875051 -232318613 + CT-rich Low_complexity Low_complexity 1 180 0 612 214 0 0 chr1 49875104 49875282 -232318382 + CT-rich Low_complexity Low_complexity 3 180 0 704 209 36 7 chr1 49875385 49875554 -232318110 - MIR SINE MIR -54 208 37 274 305 0 0 chr1 49875673 49875755 -232317909 - MIR SINE MIR -34 228 147 225 333 0 0 chr1 49876632 49876692 -232316972 - L2 LINE L2 -10 3262 3203 210 314 59 63 chr1 49876709 49876964 -232316700 + L2 LINE L2 2437 2692 -622 698 195 54 32 chr1 49876964 49877149 -232316515 + MER5A DNA MER1_type 1 189 0 210 314 59 63 chr1 49877149 49877231 -232316433 + L2 LINE L2 2692 2773 -541 2249 106 3 17 chr1 49877231 49877533 -232316131 - AluSx SINE Alu -14 298 1 210 314 59 63 chr1 49877533 49877586 -232316078 + L2 LINE L2 2773 2890 -424 193 294 128 20 chr1 49877647 49877749 -232315915 + L2 LINE L2 3183 3295 -18 245 282 218 0 chr1 49877751 49877861 -232315803 - MIR3 SINE MIR -72 136 3 408 369 67 24 chr1 49878388 49878686 -232314978 + L1ME LINE L1 5288 5598 -523 221 231 31 15 chr1 49878986 49879051 -232314613 + MIR SINE MIR 104 169 -93 529 267 121 43 chr1 49879414 49879740 -232313924 + MER115 DNA AcHobo 3 384 -309 1107 152 0 76 chr1 49879744 49879954 -232313710 - AluJb SINE Alu -14 298 105 253 183 43 97 chr1 49880002 49880095 -232313569 + MER115 DNA AcHobo 465 552 -141 615 247 0 0 chr1 49880095 49880419 -232313245 + (TA)n Simple_repeat Simple_repeat 1 324 0 1645 162 0 7 chr1 49880460 49880732 -232312932 - AluJb SINE Alu -15 297 28 391 156 8 148 chr1 49880733 49880855 -232312809 + Zaphod DNA AcHobo 3920 4024 -7 320 325 67 29 chr1 49880975 49881184 -232312480 - MIR SINE MIR 0 262 46 230 309 204 6 chr1 49881225 49881387 -232312277 - L2 LINE L2 -557 2757 2564 450 323 78 5 chr1 49882032 49882247 -232311417 - MIR SINE MIR -1 261 34 246 267 44 53 chr1 49883008 49883152 -232310512 + MIR3 SINE MIR 40 185 -23 249 414 6 13 chr1 49883234 49883391 -232310273 + MIR3 SINE MIR 8 163 -45 306 330 123 22 chr1 49884121 49884300 -232309364 - MIR SINE MIR -52 210 14 2129 89 0 0 chr1 49884606 49884865 -232308799 + AluSq SINE Alu 1 259 -54 185 238 24 0 chr1 49884887 49884929 -232308735 + L2 LINE L2 3230 3272 0 198 283 0 17 chr1 49884973 49885033 -232308631 - L2 LINE L2 -36 3236 3178 289 233 27 0 chr1 49885285 49885358 -232308306 + L1ME LINE L1 5726 5800 -321 1727 171 28 14 chr1 49885361 49885648 -232308016 - AluJo SINE Alu -21 291 1 498 299 130 28 chr1 49885649 49886073 -232307591 - L1ME4a LINE L1 -282 5839 5373 304 189 36 117 chr1 49886204 49886315 -232307349 - L1MCa LINE L1 -4371 2055 1954 352 0 125 0 chr1 49886318 49886406 -232307258 + (TA)n Simple_repeat Simple_repeat 1 99 0 1972 130 11 7 chr1 49886406 49886690 -232306974 - AluSx SINE Alu -27 285 1 1899 161 6 10 chr1 49886836 49887147 -232306517 - AluJb SINE Alu -2 310 1 384 288 80 19 chr1 49887433 49887697 -232305967 - L1ME4a LINE L1 -1499 4647 4368 2523 87 0 3 chr1 49887799 49888110 -232305554 - AluSx SINE Alu -2 310 1 190 263 132 26 chr1 49888544 49888620 -232305044 - MIR SINE MIR -118 144 61 326 295 131 38 chr1 49890543 49890815 -232302849 + L2 LINE L2 1815 2060 -1254 1942 123 6 63 chr1 49890815 49890951 -232302713 + AluJb SINE Alu 1 143 -169 2277 102 3 0 chr1 49890951 49891245 -232302419 + AluSq SINE Alu 1 295 -18 2357 93 10 0 chr1 49891250 49891551 -232302113 + AluSx SINE Alu 1 304 -8 2297 87 42 0 chr1 49891551 49891839 -232301825 + AluY SINE Alu 1 300 -11 1942 123 6 63 chr1 49891839 49892012 -232301652 + AluJb SINE Alu 145 299 -13 326 295 131 38 chr1 49892012 49892112 -232301552 + L2 LINE L2 2060 2222 -1092 1974 134 13 58 chr1 49892131 49892354 -232301310 - MLT1A1 LTR MaLR -2 363 162 1956 161 7 3 chr1 49892354 49892645 -232301019 - AluJo SINE Alu -20 292 1 1974 134 13 58 chr1 49892645 49892801 -232300863 - MLT1A1 LTR MaLR -203 162 1 277 289 133 41 chr1 49893160 49893430 -232300234 - L2 LINE L2 -465 2849 2555 2387 102 0 22 chr1 49893738 49894053 -232299611 + AluSx SINE Alu 1 308 -4 439 258 129 0 chr1 49894089 49894244 -232299420 + MIR SINE MIR 87 261 -1 425 330 88 48 chr1 49894461 49894861 -232298803 - L2 LINE L2 -1192 2122 1707 238 330 66 0 chr1 49894867 49894973 -232298691 - L2 LINE L2 -1046 2268 2156 2233 64 3 100 chr1 49895048 49895377 -232298287 + AluSp SINE Alu 1 297 -16 636 236 74 57 chr1 49895605 49895805 -232297859 - L1MC5 LINE L1 -36 7925 7717 2376 98 16 0 chr1 49895805 49896112 -232297552 + AluSp SINE Alu 1 312 -1 636 236 74 57 chr1 49896112 49896208 -232297456 - L1MC5 LINE L1 -244 7717 7624 198 111 83 0 chr1 49896398 49896434 -232297230 - L2 LINE L2 -5 3308 3270 919 253 111 56 chr1 49896451 49896882 -232296782 - L2 LINE L2 -2660 654 200 570 219 81 0 chr1 49896911 49897034 -232296630 - FLAM_A SINE Alu 0 133 1 2212 118 0 0 chr1 49897076 49897373 -232296291 + AluY SINE Alu 1 297 -14 2355 100 3 3 chr1 49897386 49897695 -232295969 + AluSq SINE Alu 3 311 -2 262 104 42 0 chr1 49897877 49897925 -232295739 - L1MA7 LINE L1 -160 6131 6082 * 663 108 155 0 chr1 49897922 49898051 -232295613 + L1MA7 LINE L1 6138 6286 -5 2482 76 7 0 chr1 49898056 49898359 -232295305 - AluSg SINE Alu -5 305 1 207 311 0 0 chr1 49900832 49900893 -232292771 - MER91B DNA MER1_type -129 61 1 424 289 94 0 chr1 49901090 49901239 -232292425 - MER5B DNA MER1_type -3 175 13 385 321 65 5 chr1 49901247 49901462 -232292202 + L2 LINE L2 2164 2391 -923 207 287 74 9 chr1 49901648 49901756 -232291908 + L2 LINE L2 2643 2757 -557 350 257 44 44 chr1 49904101 49904237 -232289427 + MIR SINE MIR 84 219 -43 41 58 0 0 chr1 49905158 49905227 -232288437 + GC_rich Low_complexity Low_complexity 1 69 0 492 228 71 62 chr1 49906649 49906860 -232286804 - L2 LINE L2 0 3313 3101 385 297 113 22 chr1 49907061 49907283 -232286381 - L2 LINE L2 -963 2351 2110 565 111 16 40 chr1 49908001 49908127 -232285537 + (GGGA)n Simple_repeat Simple_repeat 3 125 0 743 287 108 101 chr1 49908243 49908668 -232284996 + L2 LINE L2 1881 2382 -932 287 194 0 0 chr1 49908668 49908735 -232284929 + LTR33 LTR ERVL 3 69 -452 743 287 108 101 chr1 49908735 49909047 -232284617 + L2 LINE L2 2382 2690 -624 522 161 55 106 chr1 49909177 49909223 -232284441 - MER53 DNA DNA 0 189 142 2271 93 0 0 chr1 49909223 49909513 -232284151 + AluSc SINE Alu 1 290 -19 522 161 55 106 chr1 49909513 49909541 -232284123 - MER53 DNA DNA -47 142 114 1660 168 0 55 chr1 49909541 49909851 -232283813 - AluJo SINE Alu -19 293 1 522 161 55 106 chr1 49909851 49909911 -232283753 - MER53 DNA DNA -75 114 53 1743 142 89 4 chr1 49909911 49910192 -232283472 + AluJo SINE Alu 1 305 -7 2222 68 46 0 chr1 49910192 49910473 -232283191 + AluY SINE Alu 1 294 -17 522 161 55 106 chr1 49910473 49910507 -232283157 - MER53 DNA DNA -135 54 27 2060 97 45 0 chr1 49910507 49910795 -232282869 + AluSg SINE Alu 1 301 -9 522 161 55 106 chr1 49910795 49910821 -232282843 - MER53 DNA DNA -162 27 1 369 218 83 122 chr1 49911120 49911237 -232282427 + LTR41 LTR ERVL 547 652 -121 237 65 0 0 chr1 49911237 49911268 -232282396 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 369 218 83 122 chr1 49911268 49911379 -232282285 + LTR41 LTR ERVL 652 766 -7 597 346 228 11 chr1 49911386 49912252 -232281412 - L2 LINE L2 -343 2971 1919 340 320 26 106 chr1 49912252 49912744 -232280920 + L1MEd LINE L1 11 430 -5689 2248 99 20 0 chr1 49912744 49913048 -232280616 - AluSg SINE Alu 0 310 1 340 320 26 106 chr1 49913048 49913271 -232280393 + L1MEd LINE L1 430 669 -5450 244 268 37 37 chr1 49913658 49913740 -232279924 - MIR SINE MIR -168 94 13 184 326 163 32 chr1 49913869 49914090 -232279574 + L2 LINE L2 2624 2873 -441 2535 55 0 0 chr1 49914126 49914435 -232279229 - AluY SINE Alu -2 309 1 208 191 131 12 chr1 49914512 49914596 -232279068 + L2 LINE L2 2971 3064 -208 282 279 103 55 chr1 49914792 49914957 -232278707 + MIR SINE MIR 66 238 -24 403 254 104 15 chr1 49918970 49919104 -232274560 - L2 LINE L2 0 3313 3168 708 329 159 5 chr1 49919124 49919559 -232274105 + L2 LINE L2 2460 2961 -353 201 256 279 0 chr1 49919687 49919773 -232273891 + L2 LINE L2 3203 3312 -1 462 341 100 41 chr1 49919928 49920248 -232273416 - L2 LINE L2 -9 3263 2925 322 333 21 35 chr1 49920297 49920438 -232273226 - L2 LINE L2 -476 2838 2700 417 359 66 6 chr1 49920544 49920725 -232272939 + MIR SINE MIR 6 197 -65 2265 106 0 0 chr1 49920927 49921228 -232272436 - AluSx SINE Alu -11 301 1 225 178 0 0 chr1 49921381 49921426 -232272238 + (TA)n Simple_repeat Simple_repeat 2 46 0 963 320 32 48 chr1 49923412 49923937 -232269727 + L2 LINE L2 2065 2581 -733 2255 178 50 24 chr1 49924104 49924559 -232269105 - MLT1C LTR MaLR 0 467 1 424 180 8 109 chr1 49924559 49924647 -232269017 - MLT1C-int LTR MaLR 0 1371 1298 812 133 15 30 chr1 49924647 49924782 -232268882 + FLAM_A SINE Alu 1 133 0 424 180 8 109 chr1 49924782 49924821 -232268843 - MLT1C-int LTR MaLR -73 1298 1257 572 299 60 17 chr1 49930352 49930586 -232263078 + MIR SINE MIR 13 256 -6 644 317 126 45 chr1 49930947 49931707 -232261957 + L2 LINE L2 2443 3270 -2 282 145 174 0 chr1 49931905 49931974 -232261690 - MIR SINE MIR -112 150 70 486 262 16 16 chr1 49934056 49934178 -232259486 - L2 LINE L2 -2 3311 3190 189 315 90 0 chr1 49937510 49937599 -232256065 + MIR SINE MIR 40 136 -72 452 291 89 28 chr1 49937905 49938118 -232255546 - MIR SINE MIR -3 259 34 1673 164 39 0 chr1 49938138 49938424 -232255240 + AluJb SINE Alu 1 297 -15 1325 139 48 0 chr1 49941660 49941869 -232251795 - MER20 DNA MER1_type 0 219 1 861 146 168 38 chr1 49941881 49942066 -232251598 - MER3 DNA MER1_type 0 209 1 331 311 104 22 chr1 49942530 49942665 -232250999 - L2 LINE L2 -17 3255 3110 981 280 125 12 chr1 49942680 49943222 -232250442 - L2 LINE L2 -2 3311 2691 205 202 48 12 chr1 49947881 49947965 -232245699 + (CGGG)n Simple_repeat Simple_repeat 2 88 0 31 26 0 0 chr1 49948043 49948081 -232245583 + GC_rich Low_complexity Low_complexity 1 38 0 252 0 0 0 chr1 49948096 49948124 -232245540 + (CGG)n Simple_repeat Simple_repeat 3 30 0 26 74 0 0 chr1 49948131 49948185 -232245479 + GC_rich Low_complexity Low_complexity 1 54 0 198 0 0 0 chr1 49950094 49950116 -232243548 + (CAG)n Simple_repeat Simple_repeat 2 23 0 1160 326 151 23 chr1 49951326 49952502 -232241162 - L2 LINE L2 -341 2973 1648 219 282 129 25 chr1 49953305 49953468 -232240196 - L2 LINE L2 -344 2970 2791 274 308 145 60 chr1 49954944 49955178 -232238486 - L2 LINE L2 -12 3260 3007 585 303 56 4 chr1 49956211 49956442 -232237222 + L2 LINE L2 2418 2660 -654 380 311 8 30 chr1 49956728 49956860 -232236804 + L2 LINE L2 3171 3299 -14 2048 110 0 52 chr1 49956998 49957138 -232236526 + AluSx SINE Alu 12 129 -183 1901 103 16 62 chr1 49957138 49957459 -232236205 + AluSx SINE Alu 5 310 -2 1263 107 17 0 chr1 49957449 49957626 -232236038 + AluSg/x SINE Alu 124 303 -9 2048 110 0 52 chr1 49957459 49957626 -232236038 + AluSx SINE Alu 129 303 -9 5279 146 34 56 chr1 49957799 49957823 -232235841 - MER49 LTR ERV1 0 923 900 1848 119 97 0 chr1 49957823 49958101 -232235563 + AluSq SINE Alu 1 305 -8 5279 146 34 56 chr1 49958101 49959020 -232234644 - MER49 LTR ERV1 -23 900 1 265 259 6 0 chr1 49959471 49959560 -232234104 + MIR SINE MIR 43 135 -73 321 324 73 16 chr1 49961549 49961796 -232231868 - L2 LINE L2 -173 3099 2839 224 224 104 15 chr1 49961853 49961920 -232231744 - MIR SINE MIR -70 192 120 1899 143 13 10 chr1 49961921 49962221 -232231443 + AluJo SINE Alu 1 301 -11 1314 157 32 0 chr1 49962221 49962437 -232231227 + AluJb SINE Alu 88 310 -2 285 307 97 26 chr1 49962437 49962551 -232231113 - MIR SINE MIR -139 123 2 1397 167 91 19 chr1 49962926 49963189 -232230475 + AluJb SINE Alu 1 282 -30 2367 93 0 3 chr1 49963191 49963503 -232230161 - AluY SINE Alu 0 311 1 709 272 33 5 chr1 49968761 49968945 -232224719 + MIR SINE MIR 24 212 -50 1789 137 3 49 chr1 49970490 49970797 -232222867 - AluJb SINE Alu -19 293 1 2164 93 33 3 chr1 49972237 49972537 -232221127 + AluSq SINE Alu 1 309 -4 183 216 0 0 chr1 49972621 49972658 -232221006 - L2 LINE L2 -36 3277 3241 2207 88 7 3 chr1 49972763 49973058 -232220606 - AluSx SINE Alu -16 296 1 2066 133 0 0 chr1 49973108 49973408 -232220256 - AluJb SINE Alu -12 300 1 329 308 170 6 chr1 49973777 49973936 -232219728 - MIR SINE MIR -47 215 31 198 103 26 51 chr1 49974476 49974515 -232219149 + MIR SINE MIR 210 247 -15 298 280 110 0 chr1 49974967 49975067 -232218597 + L2 LINE L2 3184 3294 -19 2396 81 3 0 chr1 49975068 49975377 -232218287 + AluSx SINE Alu 1 310 -2 185 340 84 42 chr1 49975707 49975922 -232217742 + L2 LINE L2 2748 2971 -343 313 223 165 0 chr1 49976025 49976146 -232217518 + L2 LINE L2 3129 3269 -3 2037 50 109 32 chr1 49976644 49976927 -232216737 - AluY SINE Alu -6 305 1 2383 61 0 46 chr1 49977453 49977779 -232215885 - AluY SINE Alu 0 311 1 2299 71 3 37 chr1 49977779 49977979 -232215685 - AluSp SINE Alu -5 308 119 2194 99 0 13 chr1 49977979 49978283 -232215381 - AluY SINE Alu -11 300 1 2299 71 3 37 chr1 49978283 49978399 -232215265 - AluSp SINE Alu -194 119 1 195 69 0 0 chr1 49981271 49981300 -232212364 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 312 242 158 0 chr1 49981310 49981405 -232212259 - L2 LINE L2 -19 3253 3144 192 125 0 0 chr1 49983201 49983233 -232210431 + (CA)n Simple_repeat Simple_repeat 2 33 0 280 336 89 20 chr1 49983490 49983636 -232210028 + MIR3 SINE MIR 11 166 -42 309 93 0 0 chr1 49983639 49983682 -232209982 - 5S rRNA rRNA -78 43 1 344 234 90 36 chr1 49983852 49983963 -232209701 - L1ME4a LINE L1 0 6121 6005 351 0 0 0 chr1 49986129 49986168 -232207496 + (CA)n Simple_repeat Simple_repeat 2 40 0 2099 92 10 14 chr1 49987069 49987412 -232206252 + AluSq SINE Alu 1 313 0 1657 186 28 0 chr1 49987418 49987709 -232205955 + AluJo SINE Alu 5 303 -9 453 280 61 37 chr1 49987712 49987926 -232205738 + MIR SINE MIR 7 225 -37 216 259 56 0 chr1 49987906 49987960 -232205704 - L2 LINE L2 -15 3298 3242 * 348 286 25 25 chr1 49988025 49988144 -232205520 - MIR SINE MIR -55 207 89 185 250 0 0 chr1 49989209 49989245 -232204419 - L2 LINE L2 -25 3288 3253 2118 107 43 0 chr1 49991473 49991772 -232201892 - AluSx SINE Alu 0 312 1 2252 100 3 7 chr1 49992127 49992436 -232201228 + AluSx SINE Alu 1 308 -4 226 337 69 76 chr1 49993681 49993972 -232199692 + L2 LINE L2 2980 3268 -4 474 108 0 0 chr1 49994213 49994278 -232199386 + Alu SINE Alu 233 297 -12 2293 100 0 0 chr1 49994286 49994586 -232199078 + AluSx SINE Alu 1 300 -12 2186 124 0 0 chr1 49995145 49995452 -232198212 + AluSx SINE Alu 1 307 -5 669 253 45 11 chr1 49995970 49996148 -232197516 + MIR SINE MIR 2 185 -77 429 316 80 92 chr1 49996311 49996462 -232197202 - L2 LINE L2 0 3313 3162 2183 109 3 3 chr1 49996462 49996765 -232196899 + AluSq SINE Alu 1 303 -10 429 316 80 92 chr1 49996765 49997241 -232196423 - L2 LINE L2 -151 3162 2648 2173 120 10 0 chr1 49997241 49997550 -232196114 + AluSp SINE Alu 1 312 -1 429 316 80 92 chr1 49997550 49997894 -232195770 - L2 LINE L2 -665 2648 2301 366 336 67 26 chr1 49998213 49998525 -232195139 + L2 LINE L2 2920 3244 -28 24 0 0 0 chr1 49999064 49999088 -232194576 + GC_rich Low_complexity Low_complexity 1 24 0 227 177 89 13 chr1 49999128 49999207 -232194457 + (CCCGG)n Simple_repeat Simple_repeat 4 88 0 294 29 0 0 chr1 49999934 49999969 -232193695 + (CA)n Simple_repeat Simple_repeat 1 35 0 192 302 0 0 chr1 50000924 50000967 -232192697 + MIR3 SINE MIR 115 157 -51 327 314 48 0 chr1 50004006 50004111 -232189553 - L2 LINE L2 0 3272 3163 656 289 69 26 chr1 50005061 50005293 -232188371 + MIR SINE MIR 2 243 -19 321 332 114 10 chr1 50005569 50005762 -232187902 - MIR SINE MIR -32 230 18 297 0 0 0 chr1 50006088 50006121 -232187543 + (TG)n Simple_repeat Simple_repeat 2 34 0 1130 211 12 80 chr1 50006479 50006760 -232186904 + Charlie1a DNA MER1_type 1 258 -2503 2030 138 0 0 chr1 50006760 50007072 -232186592 - AluSx SINE Alu 0 312 1 1130 211 12 80 chr1 50007072 50007125 -232186539 + Charlie1a DNA MER1_type 258 313 -1142 2358 232 82 26 chr1 50007146 50007943 -232185721 - L1PA6 LINE L1 0 6154 5260 1783 154 33 13 chr1 50007943 50008242 -232185422 - AluJo SINE Alu -7 305 1 2358 232 82 26 chr1 50008242 50008684 -232184980 - L1PA6 LINE L1 -894 5260 4844 819 142 0 16 chr1 50008694 50008821 -232184843 + FLAM_C SINE Alu 9 133 -10 2251 105 3 0 chr1 50008885 50009191 -232184473 + AluSp SINE Alu 1 307 -6 251 125 83 0 chr1 50009204 50009252 -232184412 - L1M4 LINE L1 -1343 4803 4752 4482 156 129 25 chr1 50009264 50010118 -232183546 + Charlie1a DNA MER1_type 286 1266 -1495 2201 101 0 0 chr1 50010118 50010414 -232183250 + AluSq SINE Alu 1 296 -17 4482 156 129 25 chr1 50010414 50010579 -232183085 + Charlie1a DNA MER1_type 1266 1412 -43 198 0 0 0 chr1 50010973 50010995 -232182669 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1485 121 46 68 chr1 50011000 50011281 -232182383 - AluJb SINE Alu -37 275 1 620 214 0 0 chr1 50011324 50011441 -232182223 - MIR SINE MIR -43 219 103 599 270 6 6 chr1 50013265 50013424 -232180240 + MER20 DNA MER1_type 29 187 -32 394 226 258 31 chr1 50013432 50013591 -232180073 + MIR SINE MIR 28 222 -40 544 295 62 9 chr1 50014077 50014304 -232179360 + L2 LINE L2 1954 2192 -1122 558 219 47 0 chr1 50014305 50014433 -232179231 - MER63 DNA MER1_type -76 760 1 351 0 0 0 chr1 50014895 50014934 -232178730 + (TAA)n Simple_repeat Simple_repeat 3 41 0 868 260 45 5 chr1 50014942 50014985 -232178679 - MIR SINE MIR -11 251 211 1591 155 7 30 chr1 50014985 50015289 -232178375 - AluJo SINE Alu -15 297 1 327 25 0 0 chr1 50015297 50015337 -232178327 + (CA)n Simple_repeat Simple_repeat 2 41 0 868 260 45 5 chr1 50015337 50015507 -232178157 - MIR SINE MIR -57 205 20 2130 100 0 19 chr1 50015507 50015816 -232177848 + AluSx SINE Alu 1 303 -9 411 21 0 0 chr1 50016760 50016808 -232176856 + (TG)n Simple_repeat Simple_repeat 1 48 0 1217 243 81 73 chr1 50017632 50017734 -232175930 - L1ME3A LINE L1 -5 6165 6065 2171 164 8 11 chr1 50017734 50018106 -232175558 - MLT1A2 LTR MaLR 0 374 4 1217 243 81 73 chr1 50018106 50018255 -232175409 - L1ME3A LINE L1 -105 6065 5919 1733 180 0 0 chr1 50018255 50018550 -232175114 - AluJb SINE Alu -17 295 1 1217 243 81 73 chr1 50018550 50018926 -232174738 - L1ME3A LINE L1 -251 5919 5532 482 198 94 9 chr1 50018927 50019033 -232174631 - MER63 DNA MER1_type -95 741 1 2283 156 32 56 chr1 50019044 50019402 -232174262 + MER66A LTR ERV1 27 373 -105 2183 109 0 0 chr1 50019402 50019695 -232173969 + AluSx SINE Alu 1 293 -19 2283 156 32 56 chr1 50019695 50019799 -232173865 + MER66A LTR ERV1 373 478 0 3520 190 92 40 chr1 50019821 50020746 -232172918 + MER66A-int LTR ERV1 13 1025 -5651 521 329 22 13 chr1 50020740 50020968 -232172696 + MER66B-int LTR ERV1 6143 6372 -2254 * 289 92 123 92 chr1 50020979 50021044 -232172620 + MER66B-int LTR ERV1 1048 1114 -5562 695 206 28 7 chr1 50021137 50021278 -232172386 + MER66B-int LTR ERV1 2959 3102 -3574 9124 270 34 31 chr1 50021368 50021671 -232171993 + MER66B-int LTR ERV1 1210 1510 -6246 2063 114 10 3 chr1 50021671 50021968 -232171696 - AluSx SINE Alu -13 299 1 9124 270 34 31 chr1 50021968 50023246 -232170418 + MER66B-int LTR ERV1 1510 2782 -4974 2333 80 0 3 chr1 50023246 50023548 -232170116 - AluY SINE Alu -10 301 1 2239 103 0 0 chr1 50023548 50023847 -232169817 - AluY SINE Alu -11 300 1 9124 270 34 31 chr1 50023847 50027050 -232166614 + MER66B-int LTR ERV1 2782 5768 -1988 2204 101 0 3 chr1 50027050 50027357 -232166307 - AluSg SINE Alu -4 306 1 9124 270 34 31 chr1 50027357 50027441 -232166223 + MER66B-int LTR ERV1 5768 5850 -1906 664 40 20 30 chr1 50027443 50027542 -232166122 - AluY SINE Alu 0 311 214 14378 117 13 40 chr1 50027543 50028956 -232164708 + MER66B-int LTR ERV1 4608 5762 -914 2094 107 7 0 chr1 50028956 50029246 -232164418 + AluSx SINE Alu 1 292 -20 14378 117 13 40 chr1 50029246 50030138 -232163526 + MER66B-int LTR ERV1 5762 6676 0 2536 188 18 26 chr1 50030138 50030404 -232163260 + MER66B LTR ERV1 1 263 -223 2048 114 3 0 chr1 50030404 50030693 -232162971 + AluSx SINE Alu 1 290 -22 2536 188 18 26 chr1 50030693 50030916 -232162748 + MER66B LTR ERV1 263 486 0 1462 148 29 65 chr1 50031192 50031502 -232162162 + AluJo SINE Alu 2 300 -12 2552 227 52 11 chr1 50031515 50032149 -232161515 + L1ME3 LINE L1 5500 6159 -3 236 264 14 14 chr1 50032531 50032603 -232161061 - LTR65 LTR ERV1 -20 649 578 339 202 12 24 chr1 50032639 50032723 -232160941 - MER90 LTR ERV1 -149 426 344 280 243 108 40 chr1 50033033 50033181 -232160483 - HAL1b LINE L1 -6 1342 1185 2306 68 0 3 chr1 50033775 50034067 -232159597 + AluSg SINE Alu 1 291 -19 1954 133 3 0 chr1 50034174 50034475 -232159189 - AluSx SINE Alu -10 302 1 924 258 80 112 chr1 50034587 50034801 -232158863 + L1ME3A LINE L1 5256 5475 -695 1630 182 7 13 chr1 50034801 50035103 -232158561 + AluJb SINE Alu 1 300 -12 924 258 80 112 chr1 50035103 50035159 -232158505 + L1ME3A LINE L1 5475 5531 -639 938 128 0 0 chr1 50035159 50035292 -232158372 - FLAM_C SINE Alu 0 133 1 924 258 80 112 chr1 50035292 50035682 -232157982 + L1ME3A LINE L1 5531 5889 -281 27 49 0 0 chr1 50035843 50035884 -232157780 + AT_rich Low_complexity Low_complexity 1 41 0 936 221 89 4 chr1 50036186 50036421 -232157243 - LTR16A1 LTR ERVL -2 455 201 1875 142 27 0 chr1 50036789 50037084 -232156580 - AluSx SINE Alu -9 303 1 2082 128 123 10 chr1 50038056 50038236 -232155428 - MSTB LTR MaLR 0 426 268 360 0 0 0 chr1 50038236 50038276 -232155388 + (GA)n Simple_repeat Simple_repeat 1 40 0 2082 128 123 10 chr1 50038276 50038478 -232155186 - MSTB LTR MaLR -158 268 1 1943 174 3 6 chr1 50038957 50039308 -232154356 - L1PB4 LINE L1 -1 6155 5806 802 115 41 0 chr1 50039351 50039473 -232154191 - FRAM SINE Alu -2 174 48 39 68 0 0 chr1 50039637 50039711 -232153953 + AT_rich Low_complexity Low_complexity 1 74 0 614 302 235 18 chr1 50039788 50040520 -232153144 + L2 LINE L2 1812 2702 -612 3095 250 76 42 chr1 50040780 50041171 -232152493 - L2 LINE L2 -704 2610 2234 1460 156 87 3 chr1 50041171 50041288 -232152376 + AluJo SINE Alu 1 107 -205 261 0 0 0 chr1 50041288 50041317 -232152347 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1460 156 87 3 chr1 50041317 50041487 -232152177 + AluJo SINE Alu 107 312 0 3095 250 76 42 chr1 50041487 50041957 -232151707 - L2 LINE L2 -1080 2234 1704 2152 122 3 0 chr1 50041957 50042268 -232151396 - AluSx SINE Alu 0 312 1 3095 250 76 42 chr1 50042268 50042453 -232151211 - L2 LINE L2 -1610 1704 1527 773 302 101 18 chr1 50042416 50042803 -232150861 + L2 LINE L2 2895 3313 0 * 664 147 0 0 chr1 50043776 50043871 -232149793 + AluS SINE Alu 5 99 -213 294 29 0 0 chr1 50043876 50043911 -232149753 + (CA)n Simple_repeat Simple_repeat 1 35 0 889 273 7 22 chr1 50044517 50044788 -232148876 - L1ME LINE L1 -382 5788 5522 247 243 131 9 chr1 50045160 50045267 -232148397 + LTR16C LTR ERVL 362 481 -10 514 251 76 14 chr1 50045276 50045481 -232148183 - L1ME LINE L1 -638 5526 5304 1660 165 6 38 chr1 50045481 50045797 -232147867 - AluJo SINE Alu -6 306 1 514 251 76 14 chr1 50045797 50045814 -232147850 - L1ME LINE L1 -860 5304 5290 2172 113 0 0 chr1 50045836 50046137 -232147527 + AluSx SINE Alu 12 312 0 1814 246 52 28 chr1 50046152 50046733 -232146931 - MLT1G LTR MaLR 0 590 1 602 274 70 15 chr1 50046737 50046996 -232146668 - L1ME LINE L1 -868 5278 5006 697 262 0 12 chr1 50047014 50047182 -232146482 + LTR41 LTR ERVL 13 178 -595 1964 123 10 19 chr1 50047188 50047498 -232146166 - AluSc SINE Alu -2 307 1 407 94 0 0 chr1 50047694 50047747 -232145917 - Alu SINE Alu -249 53 1 321 241 125 27 chr1 50047791 50047903 -232145761 - L1 LINE L1 -2152 3994 3872 652 206 0 85 chr1 50047928 50048054 -232145610 + LTR41 LTR ERVL 585 689 -84 1655 147 22 26 chr1 50048054 50048366 -232145298 - AluJo SINE Alu -1 311 1 652 206 0 85 chr1 50048366 50048438 -232145226 + LTR41 LTR ERVL 689 766 -7 514 262 37 26 chr1 50048475 50048666 -232144998 - L1ME LINE L1 -1163 4983 4791 2252 107 0 0 chr1 50048689 50048989 -232144675 - AluSg SINE Alu -10 300 1 2285 80 0 0 chr1 50048999 50049300 -232144364 - AluY SINE Alu -10 301 1 350 213 105 29 chr1 50049345 50049474 -232144190 - L1ME LINE L1 -2152 3994 3849 1784 169 10 0 chr1 50049476 50049772 -232143892 - AluJb SINE Alu -9 303 5 621 160 28 0 chr1 50049898 50050004 -232143660 + AluSg/x SINE Alu 194 302 -10 1887 142 10 16 chr1 50050179 50050482 -232143182 - AluSx SINE Alu -11 301 1 250 319 55 18 chr1 50050522 50050685 -232142979 - L1MEd LINE L1 -5948 171 3 1747 153 13 32 chr1 50051701 50052009 -232141655 - AluJo SINE Alu -10 302 1 2041 120 3 0 chr1 50052276 50052575 -232141089 + AluSg SINE Alu 1 300 -10 1357 191 37 43 chr1 50053158 50053457 -232140207 + AluJo SINE Alu 2 298 -14 884 125 0 28 chr1 50053556 50053700 -232139964 + FLAM_C SINE Alu 4 143 0 257 150 0 0 chr1 50053807 50053847 -232139817 - L2 LINE L2 -1 3312 3273 324 192 219 0 chr1 50053847 50053920 -232139744 + L1MC4 LINE L1 6614 6702 -1340 872 236 48 62 chr1 50053920 50054229 -232139435 - L2 LINE L2 -51 3262 2958 1877 145 3 41 chr1 50054276 50054594 -232139070 + AluJo SINE Alu 5 310 -2 2368 237 182 42 chr1 50054638 50054950 -232138714 - L2 LINE L2 -1202 2112 1845 2105 89 4 0 chr1 50054950 50055272 -232138392 + AluSp SINE Alu 5 327 0 2368 237 182 42 chr1 50055272 50055929 -232137735 - L2 LINE L2 -1469 1845 1006 577 201 79 127 chr1 50055929 50056007 -232137657 - MLT1B LTR MaLR 0 390 310 1702 169 0 29 chr1 50056007 50056321 -232137343 - AluJb SINE Alu -7 305 1 577 201 79 127 chr1 50056321 50056471 -232137193 - MLT1B LTR MaLR -80 310 157 433 224 16 0 chr1 50056473 50056598 -232137066 + (TA)n Simple_repeat Simple_repeat 2 128 0 1764 139 21 7 chr1 50056861 50057168 -232136496 - AluJb SINE Alu 0 311 1 711 205 70 29 chr1 50057323 50057494 -232136170 - MLT1B LTR MaLR -212 178 1 1267 245 103 5 chr1 50057497 50057893 -232135771 - L2 LINE L2 -2315 999 565 1465 253 106 2 chr1 50057975 50058382 -232135282 - LTR16A LTR ERVL -1 449 1 492 190 190 87 chr1 50058509 50058637 -232135027 + MER58A DNA MER1_type 1 157 -2263 1478 134 130 4 chr1 50058637 50058898 -232134766 + AluJb SINE Alu 5 298 -14 492 190 190 87 chr1 50058898 50058964 -232134700 + MER58A DNA MER1_type 157 215 -9 545 131 243 0 chr1 50058965 50059095 -232134569 + FLAM_C SINE Alu 1 156 0 510 125 0 0 chr1 50059663 50059743 -232133921 + (CA)n Simple_repeat Simple_repeat 1 80 0 2055 158 39 65 chr1 50059759 50060142 -232133522 - Charlie1b DNA MER1_type -2238 523 156 1874 131 69 0 chr1 50060142 50060432 -232133232 + AluSx SINE Alu 1 310 -2 2055 158 39 65 chr1 50060432 50060585 -232133079 - Charlie1b DNA MER1_type -2605 156 1 649 138 0 49 chr1 50060590 50060713 -232132951 + FRAM SINE Alu 59 175 -1 198 0 0 0 chr1 50060733 50060755 -232132909 + (TC)n Simple_repeat Simple_repeat 2 23 0 2132 88 3 14 chr1 50060824 50061118 -232132546 + AluSp SINE Alu 1 291 -22 700 152 0 0 chr1 50061398 50061503 -232132161 - FLAM_A SINE Alu -9 133 29 483 275 28 0 chr1 50061509 50061651 -232132013 + L1PB4 LINE L1 6029 6303 0 241 217 98 65 chr1 50061934 50062026 -232131638 - MER34 LTR ERV1 -5 537 443 2189 102 0 0 chr1 50062161 50062454 -232131210 - AluSq SINE Alu -16 297 5 740 225 106 0 chr1 50062732 50062883 -232130781 - MER8 DNA MER2_type -1 238 72 6272 144 12 66 chr1 50062883 50063654 -232130010 - L1 LINE L1 -770 5376 4565 2274 91 7 3 chr1 50063654 50063963 -232129701 - AluY SINE Alu -1 310 1 2194 118 3 0 chr1 50063973 50064277 -232129387 - AluSp SINE Alu -8 305 1 6272 144 12 66 chr1 50064277 50064692 -232128972 - L1 LINE L1 -1590 4556 4256 2074 131 0 0 chr1 50064692 50065004 -232128660 - AluSx SINE Alu 0 312 1 6272 144 12 66 chr1 50065004 50065141 -232128523 - L1 LINE L1 -1890 4256 4113 2305 83 0 6 chr1 50065149 50065462 -232128202 - AluY SINE Alu 0 311 1 42 0 0 0 chr1 50065467 50065509 -232128155 + AT_rich Low_complexity Low_complexity 1 42 0 4735 72 31 60 chr1 50065509 50066247 -232127417 - L1P LINE L1 -896 5250 4534 916 76 0 0 chr1 50066247 50066363 -232127301 + L1PA7 LINE L1 6034 6151 -3 1918 161 9 6 chr1 50066402 50066750 -232126914 - L1 LINE L1 -2018 4128 3780 926 149 39 7 chr1 50066750 50066904 -232126760 - AluJo SINE Alu -25 287 129 1420 183 35 3 chr1 50066911 50067250 -232126414 - L1 LINE L1 -2680 3466 3117 2373 82 0 0 chr1 50067308 50067612 -232126052 - AluY SINE Alu -7 304 1 803 159 0 0 chr1 50067659 50067785 -232125879 - AluJo SINE Alu -181 131 6 1035 153 40 195 chr1 50067791 50067884 -232125780 + L1MC4a LINE L1 5857 5963 -1845 1580 193 0 0 chr1 50067884 50068158 -232125506 + AluJo SINE Alu 1 274 -38 1035 153 40 195 chr1 50068158 50068260 -232125404 + L1MC4a LINE L1 5963 6079 -1729 1748 104 0 110 chr1 50068260 50068681 -232124983 + AluSx SINE Alu 1 386 0 1035 153 40 195 chr1 50068681 50068709 -232124955 + L1MC4a LINE L1 6079 6110 -1698 1992 111 50 0 chr1 50068709 50068834 -232124830 + AluSx SINE Alu 1 118 -194 369 0 0 0 chr1 50068834 50068875 -232124789 + (CA)n Simple_repeat Simple_repeat 2 42 0 1992 111 50 0 chr1 50068875 50069046 -232124618 + AluSx SINE Alu 118 312 0 1035 153 40 195 chr1 50069046 50069347 -232124317 + L1MC4a LINE L1 6110 6302 -1506 1031 149 6 6 chr1 50069375 50069577 -232124087 - AluSg/x SINE Alu 0 336 135 505 78 65 0 chr1 50069578 50069655 -232124009 - L1MC1 LINE L1 -227 6106 6025 594 159 60 46 chr1 50069655 50069806 -232123858 - Charlie2 DNA MER1_type -62 2800 2648 2236 181 107 38 chr1 50069820 50070446 -232123218 - L1MC4 LINE L1 -12 7856 7199 1014 126 94 4 chr1 50070457 50070502 -232123162 + L1MCa LINE L1 2278 2318 -4197 1452 158 28 84 chr1 50070502 50070824 -232122840 + AluJb SINE Alu 1 304 -8 1014 126 94 4 chr1 50070824 50071009 -232122655 + L1MCa LINE L1 2318 2568 -3947 2015 113 0 58 chr1 50071009 50071308 -232122356 + AluSq SINE Alu 1 281 -32 480 35 0 0 chr1 50071308 50071366 -232122298 + (CA)n Simple_repeat Simple_repeat 1 58 0 2015 113 0 58 chr1 50071366 50071395 -232122269 + AluSq SINE Alu 281 310 -3 1188 177 23 5 chr1 50071397 50071612 -232122052 + L1MC1 LINE L1 6098 6316 -17 25 51 0 0 chr1 50071632 50071671 -232121993 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr1 50071793 50071814 -232121850 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 509 223 222 5 chr1 50073440 50073659 -232120005 + L1ME3A LINE L1 5683 5948 -222 690 192 41 20 chr1 50073661 50073807 -232119857 + AluJo SINE Alu 87 235 -77 275 184 61 129 chr1 50073924 50074071 -232119593 + L1ME3A LINE L1 5935 6071 -99 485 215 215 13 chr1 50074443 50074592 -232119072 - MER5A DNA MER1_type 0 189 11 814 129 0 0 chr1 50074633 50074749 -232118915 + FLAM_C SINE Alu 1 116 -27 254 140 0 20 chr1 50074749 50074799 -232118865 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 2142 103 0 0 chr1 50075866 50076156 -232117508 - AluSq SINE Alu -23 290 1 2935 160 37 28 chr1 50076176 50076721 -232116943 + MER44D DNA MER2_type 1 605 0 2279 93 7 3 chr1 50077412 50077722 -232115942 - AluSq SINE Alu -2 311 1 405 223 0 64 chr1 50077951 50078108 -232115556 + MER31-int LTR ERV1 1164 1310 -3626 2196 101 3 19 chr1 50078644 50078961 -232114703 - AluSx SINE Alu 0 312 1 23 0 0 0 chr1 50079120 50079143 -232114521 + AT_rich Low_complexity Low_complexity 1 23 0 2001 106 0 42 chr1 50079163 50079503 -232114161 + AluSp SINE Alu 1 313 0 854 91 8 8 chr1 50079599 50079720 -232113944 + FLAM_C SINE Alu 6 126 -17 1601 171 3 33 chr1 50079745 50080050 -232113614 - AluJo SINE Alu -16 296 1 189 0 0 0 chr1 50080218 50080239 -232113425 + (T)n Simple_repeat Simple_repeat 1 21 0 1421 109 60 64 chr1 50080248 50080388 -232113276 - L1MD3 LINE L1 0 7995 7856 1879 94 0 0 chr1 50080388 50080642 -232113022 + AluY SINE Alu 21 274 -37 180 0 0 0 chr1 50080646 50080666 -232112998 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1421 109 60 64 chr1 50080666 50080787 -232112877 - L1MD3 LINE L1 -142 7853 7730 359 236 95 27 chr1 50080777 50080972 -232112692 - L1ME1 LINE L1 -288 5878 5675 * 1669 168 3 16 chr1 50081135 50081451 -232112213 - AluJo SINE Alu 0 312 1 214 333 0 0 chr1 50081603 50081660 -232112004 - L2 LINE L2 -5 3267 3211 * 473 274 172 15 chr1 50081659 50081863 -232111801 + L2 LINE L2 2128 2363 -951 561 157 0 0 chr1 50081863 50081946 -232111718 + AluJ/FLAM SINE Alu 2 84 -228 369 212 91 30 chr1 50081946 50082045 -232111619 - MER5C DNA MER1_type -217 107 3 202 250 0 0 chr1 50083241 50083285 -232110379 + L2 LINE L2 3269 3312 -1 186 250 50 17 chr1 50083273 50083333 -232110331 - L2 LINE L2 -265 3007 2946 * 1477 202 60 40 chr1 50083372 50083904 -232109760 + MER97c DNA MER1_type? 4 613 -440 2343 65 0 34 chr1 50083904 50084226 -232109438 + AluY SINE Alu 1 311 0 1477 202 60 40 chr1 50084226 50084491 -232109173 + MER97c DNA MER1_type? 613 871 -182 22 35 0 0 chr1 50084610 50084639 -232109025 + AT_rich Low_complexity Low_complexity 1 29 0 285 191 59 0 chr1 50084754 50084822 -232108842 + MER97c DNA MER1_type? 1004 1075 -15 1209 273 306 21 chr1 50085045 50085821 -232107843 + L2 LINE L2 1491 2045 -1269 1895 154 3 10 chr1 50085821 50086132 -232107532 - 7SLRNA srpRNA srpRNA -2 318 10 1209 273 306 21 chr1 50086132 50086174 -232107490 + L2 LINE L2 2045 2074 -1240 2160 84 3 0 chr1 50086174 50086532 -232107132 - AluSq SINE Alu 0 359 1 1209 273 306 21 chr1 50086532 50086807 -232106857 + L2 LINE L2 2074 2898 -416 526 296 78 29 chr1 50086862 50087068 -232106596 + L2 LINE L2 3093 3308 -5 366 224 0 83 chr1 50087777 50087969 -232105695 + G-rich Low_complexity Low_complexity 3 178 0 209 219 24 98 chr1 50088162 50088244 -232105420 - L2 LINE L2 -15 3298 3223 532 311 174 50 chr1 50088530 50089475 -232104189 - L2 LINE L2 -537 2777 1716 318 313 12 0 chr1 50089490 50089573 -232104091 - L2 LINE L2 -7 3265 3182 911 202 0 22 chr1 50089575 50089753 -232103911 + FAM SINE Alu 1 174 -1 316 277 94 57 chr1 50089782 50089863 -232103801 - L1MC4 LINE L1 -210 7832 7755 1698 156 10 7 chr1 50089863 50090152 -232103512 - AluSx SINE Alu -22 290 1 316 277 94 57 chr1 50090152 50090544 -232103120 - L1MC4 LINE L1 -287 7755 7244 240 250 0 0 chr1 50090903 50090963 -232102701 + CT-rich Low_complexity Low_complexity 6 65 0 2076 113 0 13 chr1 50091333 50091635 -232102029 - AluSx SINE Alu -13 299 2 306 140 0 0 chr1 50091646 50091703 -232101961 - L1MC4 LINE L1 -878 7164 7108 308 146 0 0 chr1 50091835 50091876 -232101788 + AluJ/FRAM SINE Alu 216 256 -46 849 153 13 32 chr1 50091910 50092067 -232101597 - AluJo SINE Alu -126 186 33 1685 222 134 65 chr1 50092077 50092829 -232100835 - L1M4c LINE L1 -2714 3668 2865 497 141 256 34 chr1 50092834 50093068 -232100596 - L1M4c LINE L1 -3885 2499 2214 1135 120 6 11 chr1 50093068 50093232 -232100432 - AluSg/x SINE Alu -14 298 134 2152 83 7 7 chr1 50093232 50093532 -232100132 - AluY SINE Alu -11 300 1 3508 146 157 27 chr1 50093543 50094215 -232099449 - L1M4c LINE L1 -4169 2215 1431 1945 128 38 0 chr1 50094215 50094504 -232099160 - AluSq SINE Alu -13 300 1 3508 146 157 27 chr1 50094504 50094597 -232099067 - L1M4c LINE L1 -4953 1431 1351 1923 193 79 33 chr1 50094595 50094741 -232098923 - L1M4c LINE L1 -5916 468 330 * 2049 101 0 7 chr1 50094741 50095061 -232098603 - AluY SINE Alu 0 318 1 1923 193 79 33 chr1 50095061 50095333 -232098331 - L1M4c LINE L1 -6054 330 30 663 253 91 25 chr1 50095344 50095585 -232098079 - L1MC4 LINE L1 -1094 6948 6692 1585 172 0 43 chr1 50095642 50095944 -232097720 - AluJb SINE Alu -22 290 2 319 211 192 96 chr1 50095966 50096122 -232097542 - L1ME3A LINE L1 -12 6158 5988 384 77 0 0 chr1 50096238 50096290 -232097374 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 304 54 0 0 chr1 50096290 50096327 -232097337 - AluS SINE Alu -220 83 47 326 273 125 61 chr1 50096330 50096722 -232096942 - L1MEd LINE L1 -1230 1260 785 1395 161 135 11 chr1 50096800 50097067 -232096597 - AluJo SINE Alu 0 302 3 2368 76 3 0 chr1 50097452 50097754 -232095910 + AluSp SINE Alu 1 303 -10 2160 104 3 0 chr1 50099509 50099817 -232093847 - AluY SINE Alu -2 309 1 185 267 50 17 chr1 50100071 50100131 -232093533 + L2 LINE L2 2717 2778 -536 * 342 298 89 0 chr1 50100122 50100246 -232093418 + MIR SINE MIR 19 153 -109 1959 150 0 0 chr1 50100424 50100717 -232092947 - AluSx SINE Alu -19 293 1 2104 104 7 3 chr1 50100747 50101036 -232092628 + AluSg SINE Alu 1 290 -20 229 194 204 21 chr1 50101609 50101702 -232091962 - MIR SINE MIR -133 129 20 240 263 88 0 chr1 50102887 50102944 -232090720 - L2 LINE L2 -68 3245 3184 1953 117 13 0 chr1 50102971 50103269 -232090395 + AluSx SINE Alu 1 302 -10 215 246 29 29 chr1 50103290 50103359 -232090305 + MIR SINE MIR 53 121 -141 344 235 296 5 chr1 50103417 50103613 -232090051 - L2 LINE L2 -623 2691 2439 221 171 0 0 chr1 50103745 50103786 -232089878 + A-rich Low_complexity Low_complexity 1 41 0 276 150 233 0 chr1 50103791 50103851 -232089813 + AluJb SINE Alu 57 130 -172 343 304 46 26 chr1 50104037 50104231 -232089433 - L1M4 LINE L1 -4879 1663 1466 2116 105 13 0 chr1 50104237 50104542 -232089122 - AluSp SINE Alu -2 311 3 393 183 14 14 chr1 50105126 50105197 -232088467 + MER76 LTR ERV 112 182 -506 1548 161 43 12 chr1 50105200 50105455 -232088209 - MER70A LTR ERVL 0 472 210 1930 132 3 14 chr1 50105728 50106024 -232087640 - AluJo SINE Alu -16 296 4 248 294 39 26 chr1 50106828 50106981 -232086683 + GA-rich Low_complexity Low_complexity 1 155 0 304 301 125 0 chr1 50110465 50110601 -232083063 + L2 LINE L2 2553 2705 -609 333 307 53 9 chr1 50110775 50110889 -232082775 - MIR SINE MIR -56 206 88 1293 213 31 19 chr1 50111045 50111303 -232082361 + MLT1A1 LTR MaLR 1 261 -104 219 133 0 0 chr1 50111440 50111485 -232082179 + (TATG)n Simple_repeat Simple_repeat 2 46 0 259 96 39 0 chr1 50111905 50111957 -232081707 + (TA)n Simple_repeat Simple_repeat 2 55 0 708 215 0 0 chr1 50112182 50112312 -232081352 - FLAM_A SINE Alu 0 133 4 1615 103 5 0 chr1 50112358 50112572 -232081092 + AluSg SINE Alu 1 215 -95 335 118 0 0 chr1 50112572 50112623 -232081041 + AluSg SINE Alu 249 299 -3 3395 223 59 18 chr1 50112630 50112909 -232080755 + L1 LINE L1 2838 3104 -3042 1540 168 32 48 chr1 50112909 50113219 -232080445 + AluJo SINE Alu 1 305 -7 3395 223 59 18 chr1 50113219 50113899 -232079765 + L1 LINE L1 3104 3837 -2309 509 129 0 35 chr1 50113901 50113986 -232079678 - Tigger2 DNA MER2_type -2633 85 4 1984 123 35 63 chr1 50113988 50114385 -232079279 + L1MB3 LINE L1 5781 6166 -17 544 207 8 33 chr1 50114488 50114609 -232079055 + FLAM_A SINE Alu 18 135 -7 1814 145 0 38 chr1 50114931 50115221 -232078443 + AluSx SINE Alu 1 279 -33 219 36 0 0 chr1 50115221 50115249 -232078415 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 395 333 75 5 chr1 50116006 50116192 -232077472 - MIR SINE MIR -50 212 14 236 30 30 0 chr1 50116346 50116379 -232077285 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 396 138 46 0 chr1 50116438 50116525 -232077139 + CT-rich Low_complexity Low_complexity 2 92 0 430 143 0 88 chr1 50116548 50116639 -232077025 - AluJo SINE Alu -7 305 223 945 158 0 0 chr1 50116640 50116779 -232076885 - AluJo SINE Alu -173 139 1 2009 121 4 4 chr1 50116909 50117220 -232076444 - AluSx SINE Alu 0 311 1 637 53 0 0 chr1 50117391 50117466 -232076198 - Alu SINE Alu -16 295 221 794 188 7 29 chr1 50117677 50117815 -232075849 + AluJo SINE Alu 2 136 -176 2064 113 0 14 chr1 50117815 50118106 -232075558 + AluSx SINE Alu 1 287 -25 241 277 255 0 chr1 50118303 50118397 -232075267 - L1ME LINE L1 -383 5738 5621 288 318 87 0 chr1 50118739 50118865 -232074799 - L1ME LINE L1 -1998 4148 4012 1924 129 18 0 chr1 50118882 50119184 -232074480 - AluSx SINE Alu 0 307 1 798 175 0 0 chr1 50119383 50119509 -232074155 - FLAM_C SINE Alu -6 127 2 1603 184 23 7 chr1 50121083 50121388 -232072276 - AluJo SINE Alu -2 310 1 30 0 0 0 chr1 50121705 50121735 -232071929 + AT_rich Low_complexity Low_complexity 1 30 0 1644 43 7 164 chr1 50121737 50122017 -232071647 - L1PA5 LINE L1 -1 6153 5918 695 118 0 0 chr1 50122111 50122204 -232071460 - HY4 scRNA scRNA 0 93 1 521 224 80 16 chr1 50122825 50122950 -232070714 - FLAM_C SINE Alu 0 133 1 2221 125 0 10 chr1 50124068 50124380 -232069284 + AluSx SINE Alu 4 312 0 1686 119 100 11 chr1 50124495 50124792 -232068872 + AluSx SINE Alu 1 320 0 284 259 0 0 chr1 50124812 50124870 -232068794 - MER5A DNA MER1_type -12 177 120 2193 109 10 3 chr1 50124875 50125169 -232068495 + AluSx SINE Alu 1 296 -16 1823 150 0 35 chr1 50125361 50125674 -232067990 - AluJo SINE Alu -10 302 1 638 202 0 40 chr1 50125748 50125872 -232067792 + FLAM_C SINE Alu 2 120 -23 2213 93 0 0 chr1 50125895 50126198 -232067466 - AluSc SINE Alu 0 303 1 503 241 27 0 chr1 50126239 50126351 -232067313 - FLAM_A SINE Alu -20 122 8 1136 171 86 117 chr1 50126940 50127076 -232066588 + L1MD3 LINE L1 7482 7621 -374 2216 109 0 7 chr1 50127076 50127369 -232066295 + AluSx SINE Alu 1 291 -21 1136 171 86 117 chr1 50127369 50127618 -232066046 + L1MD3 LINE L1 7621 7855 -140 670 244 31 4 chr1 50127569 50127794 -232065870 - L1MDa LINE L1 -2888 3652 3422 * 7561 183 183 43 chr1 50127765 50127878 -232065786 - L1 LINE L1 -2955 3427 3331 1665 172 38 3 chr1 50127878 50128169 -232065495 - AluJb SINE Alu -11 301 1 7561 183 183 43 chr1 50128169 50128716 -232064948 - L1 LINE L1 -3051 3331 2862 2099 117 3 31 chr1 50128716 50129033 -232064631 - AluSx SINE Alu -4 308 1 7561 183 183 43 chr1 50129033 50129672 -232063992 - L1 LINE L1 -3520 2862 2314 2086 115 14 0 chr1 50129672 50129973 -232063691 - AluSx SINE Alu 0 305 1 7561 183 183 43 chr1 50129973 50130211 -232063453 - L1 LINE L1 -4068 2314 2111 866 182 0 0 chr1 50130211 50130343 -232063321 - FLAM_C SINE Alu -1 132 1 7561 183 183 43 chr1 50130343 50131790 -232061874 - L1 LINE L1 -4271 2111 26 1631 160 27 37 chr1 50131809 50132103 -232061561 - AluJb SINE Alu -21 291 1 1802 165 14 7 chr1 50132185 50132470 -232061194 - AluJo SINE Alu -21 291 5 309 294 6 53 chr1 50132696 50132866 -232060798 - L1MDa LINE L1 -3932 2450 2289 1300 254 84 10 chr1 50132889 50133303 -232060361 - MLT2F LTR ERVL -17 646 202 339 227 21 62 chr1 50133313 50133410 -232060254 - MLT2F LTR ERVL -564 99 7 369 0 0 0 chr1 50133412 50133453 -232060211 + (TG)n Simple_repeat Simple_repeat 2 42 0 321 237 21 62 chr1 50133463 50133560 -232060104 - MLT2F LTR ERVL -564 99 7 23 0 0 0 chr1 50133653 50133676 -232059988 + AT_rich Low_complexity Low_complexity 1 23 0 1001 120 0 0 chr1 50133691 50133816 -232059848 - FLAM_C SINE Alu -8 125 1 2177 123 10 10 chr1 50133854 50134164 -232059500 + AluSx SINE Alu 2 311 -1 2311 79 0 13 chr1 50134377 50134692 -232058972 - AluY SINE Alu 0 311 1 286 304 133 15 chr1 50134693 50134956 -232058708 - HAL1b LINE L1 -525 823 530 10888 198 45 95 chr1 50135047 50135113 -232058551 - L1 LINE L1 -3810 3038 2970 2313 118 0 0 chr1 50135113 50135426 -232058238 - AluSq SINE Alu 0 313 1 10888 198 45 95 chr1 50135426 50135453 -232058211 - L1 LINE L1 -3878 2970 2943 2483 88 0 0 chr1 50135453 50135760 -232057904 - AluSx SINE Alu -5 307 1 10888 198 45 95 chr1 50135760 50136386 -232057278 - L1 LINE L1 -3905 2943 2287 848 155 35 52 chr1 50136386 50136560 -232057104 - FAM SINE Alu -2 47 1 10888 198 45 95 chr1 50136560 50138804 -232054860 - L1 LINE L1 -4561 2287 1 2959 215 34 81 chr1 50139131 50139983 -232053681 + MER21B LTR ERV1 1 812 -51 470 226 69 38 chr1 50140849 50141008 -232052656 - MIR SINE MIR -78 184 21 24 0 0 0 chr1 50141470 50141494 -232052170 + AT_rich Low_complexity Low_complexity 1 24 0 412 262 28 62 chr1 50141561 50141851 -232051813 - L1MC5 LINE L1 -36 7925 7646 1887 126 6 44 chr1 50141851 50142207 -232051457 - MER4A LTR ERV1 0 664 264 654 131 0 10 chr1 50142210 50142309 -232051355 - MER4A LTR ERV1 -566 98 1 15684 117 61 27 chr1 50142314 50143351 -232050313 - MER4A-int LTR ERV1 -1 6597 5597 207 0 0 0 chr1 50143351 50143374 -232050290 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 15684 117 61 27 chr1 50143374 50143847 -232049817 - MER4A-int LTR ERV1 -1001 5597 5142 2346 94 0 10 chr1 50143847 50144155 -232049509 + AluSc SINE Alu 1 305 -4 15684 117 61 27 chr1 50144155 50145140 -232048524 - MER4A-int LTR ERV1 -1456 5142 4002 2214 92 31 3 chr1 50145140 50145433 -232048231 + AluSp SINE Alu 1 301 -12 15684 117 61 27 chr1 50145433 50145605 -232048059 - MER4A-int LTR ERV1 -2596 4002 3837 3113 165 81 83 chr1 50145613 50145889 -232047775 - MER4A-int LTR ERV1 -2370 4306 4031 2296 99 0 0 chr1 50145889 50146181 -232047483 + AluY SINE Alu 1 292 -19 3113 165 81 83 chr1 50146181 50147033 -232046631 - MER4A-int LTR ERV1 -2645 4031 1514 4949 143 77 37 chr1 50147038 50147768 -232045896 - MER4A-int LTR ERV1 -4293 2305 1520 2171 121 0 0 chr1 50147768 50148090 -232045574 + AluSx SINE Alu 1 322 0 4949 143 77 37 chr1 50148090 50148388 -232045276 - MER4A-int LTR ERV1 -5078 1520 1235 2400 54 7 7 chr1 50148392 50148687 -232044977 - AluY SINE Alu -14 297 3 709 34 0 11 chr1 50148709 50148797 -232044867 + LTR7 LTR ERV1 364 450 0 1691 123 114 13 chr1 50148797 50149025 -232044639 - MER4A-int LTR ERV1 -6250 348 78 2452 33 3 17 chr1 50149025 50149325 -232044339 + AluY SINE Alu 1 296 -15 1691 123 114 13 chr1 50149325 50149412 -232044252 - MER4A-int LTR ERV1 -6520 78 1 1843 132 8 41 chr1 50149414 50149769 -232043895 - MER4A LTR ERV1 0 664 263 405 157 181 0 chr1 50149769 50149852 -232043812 - MER4A LTR ERV1 -566 98 1 325 242 101 71 chr1 50149867 50150065 -232043599 - L1MC5 LINE L1 -332 7629 7426 2286 117 0 0 chr1 50150081 50150389 -232043275 - AluSx SINE Alu 0 312 5 2387 84 3 3 chr1 50150585 50150893 -232042771 - AluY SINE Alu -3 308 1 2354 56 0 3 chr1 50151202 50151510 -232042154 - AluY SINE Alu 0 307 1 1603 186 38 81 chr1 50151510 50151896 -232041768 - MER65A LTR ERV1 -19 426 60 1813 171 10 0 chr1 50151896 50152194 -232041470 - AluJo SINE Alu -11 301 1 1603 186 38 81 chr1 50152194 50152252 -232041412 - MER65A LTR ERV1 -385 60 1 35 24 0 0 chr1 50152262 50152304 -232041360 + AT_rich Low_complexity Low_complexity 1 42 0 843 144 0 8 chr1 50152309 50152427 -232041237 - FLAM_C SINE Alu -16 117 1 1602 294 47 7 chr1 50152428 50152659 -232041005 - MER65A-int LTR ERV1 -17 4854 4634 2237 62 0 49 chr1 50152659 50152964 -232040700 - AluY SINE Alu -1 310 21 1602 294 47 7 chr1 50152964 50153307 -232040357 - MER65A-int LTR ERV1 -237 4634 4257 30 0 0 0 chr1 50153307 50153337 -232040327 + AT_rich Low_complexity Low_complexity 1 30 0 1294 176 115 0 chr1 50153337 50153485 -232040179 - AluJo SINE Alu -16 296 166 204 40 0 0 chr1 50153485 50153510 -232040154 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1294 176 115 0 chr1 50153510 50153622 -232040042 - AluJo SINE Alu -146 166 6 1708 180 0 31 chr1 50153667 50153989 -232039675 - AluJo SINE Alu 0 312 1 832 259 83 98 chr1 50153989 50154507 -232039157 - MER65A-int LTR ERV1 -752 4119 3610 488 256 71 34 chr1 50154662 50154900 -232038764 - LTR49-int LTR ERV1 -1114 3822 3576 1187 157 5 20 chr1 50154910 50155114 -232038550 - AluJo SINE Alu -25 287 87 1653 162 9 64 chr1 50155149 50155476 -232038188 - AluJo SINE Alu -1 311 3 676 151 0 0 chr1 50155566 50155659 -232038005 - FLAM_C SINE Alu -25 118 26 587 268 129 14 chr1 50155668 50155994 -232037670 - LTR49-int LTR ERV1 -1515 4816 3149 1027 220 0 0 chr1 50155994 50156203 -232037461 + L1P LINE L1 2837 3045 -3101 866 218 52 0 chr1 50156215 50156389 -232037275 - AluJo SINE Alu -129 183 1 58 106 0 0 chr1 50156392 50156618 -232037046 + AT_rich Low_complexity Low_complexity 1 226 0 1509 187 47 7 chr1 50157382 50157682 -232035982 - AluJb SINE Alu 0 312 1 367 194 56 138 chr1 50157827 50158023 -232035641 - L1MC5 LINE L1 -439 7522 7343 1174 160 10 10 chr1 50158024 50158218 -232035446 - MLT2B2 LTR ERVL 0 515 322 27 29 0 0 chr1 50158635 50158669 -232034995 + AT_rich Low_complexity Low_complexity 1 34 0 1830 233 72 62 chr1 50158772 50158901 -232034763 - L1MC5 LINE L1 -1839 5969 5843 2334 104 0 0 chr1 50158901 50159200 -232034464 - AluSx SINE Alu -13 299 1 1830 233 72 62 chr1 50159200 50159727 -232033937 - L1MC5 LINE L1 -1965 5843 5307 308 176 0 0 chr1 50160150 50160201 -232033463 - MSTB LTR MaLR 0 426 376 2013 143 0 7 chr1 50160201 50160509 -232033155 - AluJb SINE Alu -6 306 1 225 250 54 0 chr1 50160589 50160645 -232033019 + MER5C DNA MER1_type 2 60 -264 497 258 79 107 chr1 50160850 50161096 -232032568 + L1M4 LINE L1 2671 2922 -3224 2506 87 0 0 chr1 50161096 50161405 -232032259 + AluSx SINE Alu 1 309 -3 2090 118 4 0 chr1 50161415 50161695 -232031969 + AluSx SINE Alu 1 281 -31 497 258 79 107 chr1 50161695 50161964 -232031700 + L1M4 LINE L1 2931 3185 -2961 2238 104 0 0 chr1 50161980 50162260 -232031404 - AluSx SINE Alu -32 280 1 267 341 41 6 chr1 50162415 50162585 -232031079 + L1M4 LINE L1 3357 3532 -2614 964 236 82 38 chr1 50162595 50162913 -232030751 + MER21B LTR ERV1 408 739 -124 238 262 59 96 chr1 50162981 50163299 -232030365 + L1M4 LINE L1 4151 4479 -1667 2075 130 9 22 chr1 50163299 50163615 -232030049 + AluSx SINE Alu 1 312 0 238 262 59 96 chr1 50163615 50163691 -232029973 + L1M4 LINE L1 4479 4556 -1590 2497 53 20 10 chr1 50163691 50163993 -232029671 + AluY SINE Alu 1 305 -6 238 262 59 96 chr1 50163993 50164139 -232029525 + L1M4 LINE L1 4556 4672 -1474 2051 136 0 3 chr1 50164146 50164448 -232029216 + AluJb SINE Alu 11 311 -1 322 208 45 51 chr1 50164453 50164563 -232029101 + MER41B LTR ERV1 207 341 -251 * 1187 166 72 103 chr1 50164538 50164858 -232028806 + MER66A LTR ERV1 169 478 0 196 100 50 0 chr1 50165012 50165052 -232028612 + (TA)n Simple_repeat Simple_repeat 1 42 0 438 100 143 10 chr1 50165100 50165330 -232028334 + AluSq SINE Alu 1 298 -15 2163 122 7 0 chr1 50165731 50166035 -232027629 + AluSq SINE Alu 1 306 -7 858 150 0 0 chr1 50166091 50166211 -232027453 - FLAM_C SINE Alu -23 120 1 486 301 89 71 chr1 50166219 50166602 -232027062 - HAL1b LINE L1 -534 814 439 2252 107 0 3 chr1 50166602 50166900 -232026764 - AluSx SINE Alu -15 297 1 486 301 89 71 chr1 50166900 50167258 -232026406 - HAL1b LINE L1 -909 439 60 2383 88 0 7 chr1 50167258 50167555 -232026109 - AluSx SINE Alu -8 304 10 328 232 101 124 chr1 50167556 50167842 -232025822 - HAL1b LINE L1 -1084 966 766 1649 186 10 10 chr1 50167842 50168133 -232025531 + AluJb SINE Alu 1 291 -21 328 232 101 124 chr1 50168133 50168180 -232025484 - HAL1b LINE L1 -1284 766 719 2354 99 0 0 chr1 50168411 50168703 -232024961 + AluSx SINE Alu 11 302 -10 2535 57 7 0 chr1 50168787 50169087 -232024577 - AluY SINE Alu -9 302 1 1019 285 65 3 chr1 50169616 50169925 -232023739 + LTR16A LTR ERVL 115 442 -8 440 141 24 0 chr1 50169972 50170057 -232023607 - LTR54 LTR ERV1 -17 493 407 1906 174 3 19 chr1 50170289 50170605 -232023059 + AluJo SINE Alu 1 311 -1 2482 74 3 0 chr1 50170733 50171029 -232022635 - AluSp SINE Alu -16 297 1 404 315 61 30 chr1 50171511 50171617 -232022047 - L1M4 LINE L1 -2142 4004 3888 2095 146 0 13 chr1 50171617 50171933 -232021731 - AluJb SINE Alu 0 312 1 404 315 61 30 chr1 50171933 50172023 -232021641 - L1M4 LINE L1 -2258 3888 3802 968 284 79 44 chr1 50172023 50172649 -232021015 - L1M4 LINE L1 -1710 4436 3834 2201 137 0 0 chr1 50172649 50172948 -232020716 - AluSx SINE Alu -13 299 1 968 284 79 44 chr1 50172948 50172980 -232020684 - L1M4 LINE L1 -2312 3834 3805 1578 188 24 13 chr1 50172980 50173278 -232020386 - AluJo SINE Alu -11 301 1 968 284 79 44 chr1 50173278 50173415 -232020249 - L1M4 LINE L1 -2341 3805 3606 1446 161 96 31 chr1 50173415 50173707 -232019957 - AluJo SINE Alu -1 311 1 968 284 79 44 chr1 50173707 50173757 -232019907 - L1M4 LINE L1 -2540 3606 3559 1899 86 41 0 chr1 50173870 50174143 -232019521 + AluSq SINE Alu 31 313 0 619 163 6 6 chr1 50175055 50175201 -232018463 - MER8 DNA MER2_type 0 239 4 437 109 16 0 chr1 50175373 50175437 -232018227 + AluSg/x SINE Alu 214 278 -32 613 0 26 0 chr1 50175437 50175514 -232018150 + (TAAAA)n Simple_repeat Simple_repeat 1 79 0 1483 139 53 4 chr1 50175714 50175958 -232017706 + AluJo SINE Alu 50 305 -7 186 133 0 0 chr1 50175958 50175988 -232017676 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 805 181 27 110 chr1 50175992 50176195 -232017469 + L1M4 LINE L1 2505 2678 -3468 2311 90 21 0 chr1 50176195 50176484 -232017180 - AluSx SINE Alu -17 295 1 805 181 27 110 chr1 50176484 50176572 -232017092 + L1M4 LINE L1 2678 2772 -3374 1869 177 3 19 chr1 50176575 50176891 -232016773 + AluJo SINE Alu 1 311 -1 341 255 66 0 chr1 50176907 50177013 -232016651 + L1M4 LINE L1 2937 3049 -3097 1102 317 72 40 chr1 50177014 50177174 -232016490 - ERVL LTR ERVL -2258 3506 3352 1925 154 7 10 chr1 50177174 50177467 -232016197 - AluJo SINE Alu -18 294 3 1102 317 72 40 chr1 50177467 50177851 -232015813 - ERVL LTR ERVL -2412 3352 2945 1979 163 0 0 chr1 50178391 50178680 -232014984 - AluJb SINE Alu -23 289 1 2808 212 47 7 chr1 50178877 50179556 -232014108 - L1ME3 LINE L1 -2 6160 5455 931 271 73 54 chr1 50179716 50180332 -232013332 + L1M4 LINE L1 3596 4223 -1923 201 386 40 0 chr1 50180356 50180457 -232013207 + L2 LINE L2 2560 2664 -650 207 214 0 0 chr1 50180469 50180511 -232013153 + CT-rich Low_complexity Low_complexity 1 42 0 326 244 319 0 chr1 50180512 50180647 -232013017 - L1ME4a LINE L1 -3 6118 5941 530 231 113 65 chr1 50180653 50180882 -232012782 + L2 LINE L2 3038 3277 -36 229 288 34 0 chr1 50181741 50181800 -232011864 + L2 LINE L2 3192 3252 -20 371 254 164 22 chr1 50181846 50181980 -232011684 - MIR SINE MIR -31 231 79 480 333 128 32 chr1 50183789 50184225 -232009439 + L2 LINE L2 2033 2510 -804 211 264 82 110 chr1 50184235 50184417 -232009247 - L2 LINE L2 -120 3193 3017 184 309 75 11 chr1 50184429 50184523 -232009141 + L2 LINE L2 2491 2590 -724 184 287 87 26 chr1 50184495 50184610 -232009054 - MIR3 SINE MIR -45 163 42 371 280 127 0 chr1 50184783 50184901 -232008763 + L2 LINE L2 3139 3271 -1 183 205 103 0 chr1 50184905 50184944 -232008720 + L2 LINE L2 3139 3181 -91 2049 146 0 0 chr1 50184963 50185265 -232008399 - AluJb SINE Alu -10 302 1 389 280 134 43 chr1 50185311 50185543 -232008121 - L2 LINE L2 -188 3084 2832 782 216 271 0 chr1 50185756 50186011 -232007653 - MER5C DNA MER1_type 0 324 1 758 266 136 16 chr1 50186011 50186379 -232007285 - L2 LINE L2 -610 2704 2293 352 318 253 14 chr1 50192517 50193153 -232000511 + L2 LINE L2 2127 2914 -400 247 331 145 7 chr1 50193157 50193302 -232000362 + MIR SINE MIR 28 192 -70 208 284 83 55 chr1 50193547 50193656 -232000008 - MIR SINE MIR -70 138 27 778 158 72 59 chr1 50194035 50194187 -231999477 - AluSg/x SINE Alu -38 274 121 254 256 77 68 chr1 50194599 50194716 -231998948 - L2 LINE L2 0 3272 3155 316 312 110 52 chr1 50194935 50195454 -231998210 - L2 LINE L2 -433 2881 2333 405 0 0 0 chr1 50195514 50195559 -231998105 + (CA)n Simple_repeat Simple_repeat 2 46 0 332 243 89 37 chr1 50195562 50195775 -231997889 - L1 LINE L1 -1089 5057 4836 251 106 82 106 chr1 50196284 50196369 -231997295 + MER53 DNA DNA 107 189 0 246 94 219 94 chr1 50196291 50196387 -231997277 - MER53 DNA DNA -81 108 1 * 625 200 41 113 chr1 50196508 50196703 -231996961 + MIR SINE MIR 44 224 -38 256 170 0 21 chr1 50199289 50199336 -231994328 - MIR SINE MIR -123 139 94 1947 115 44 21 chr1 50199686 50200024 -231993640 - MER46B DNA MER2_type -15 221 1 235 200 18 0 chr1 50199977 50200032 -231993632 + MER46A DNA MER2_type 97 152 -84 * 1369 188 105 0 chr1 50200124 50200390 -231993274 - AluJo SINE Alu -18 294 1 1467 249 75 9 chr1 50200484 50200925 -231992739 + MLT1L LTR MaLR 146 615 0 917 228 3 104 chr1 50201251 50201567 -231992097 - MLT1J LTR MaLR -128 383 100 636 265 99 67 chr1 50201691 50202065 -231991599 + L2 LINE L2 1017 1402 -1912 1345 94 0 0 chr1 50202147 50202317 -231991347 - AluSg/x SINE Alu -11 301 132 645 299 170 28 chr1 50202328 50202947 -231990717 + L2 LINE L2 1530 2236 -1078 294 213 311 30 chr1 50202962 50203126 -231990538 + L2 LINE L2 2533 2742 -572 2128 96 18 4 chr1 50203127 50203436 -231990228 + AluSg SINE Alu 1 313 0 279 164 0 0 chr1 50203446 50203501 -231990163 + L1MD3 LINE L1 7757 7811 -184 1020 134 7 0 chr1 50203502 50203651 -231990013 - AluSg/x SINE Alu -26 284 135 581 201 151 0 chr1 50203669 50203808 -231989856 + L1MD3 LINE L1 7828 7987 -8 708 288 76 53 chr1 50204976 50205463 -231988201 - L2 LINE L2 -4 3309 2812 206 232 36 18 chr1 50206012 50206068 -231987596 + L2 LINE L2 3214 3270 -2 217 203 0 62 chr1 50208516 50208580 -231985084 + GA-rich Low_complexity Low_complexity 3 62 0 436 330 71 9 chr1 50209223 50209447 -231984217 + MIR SINE MIR 10 247 -15 198 191 0 0 chr1 50210160 50210207 -231983457 + (CA)n Simple_repeat Simple_repeat 1 47 0 440 35 17 0 chr1 50210539 50210597 -231983067 + (CATA)n Simple_repeat Simple_repeat 4 62 0 248 218 0 13 chr1 50210609 50210687 -231982977 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 799 228 67 16 chr1 50212624 50212817 -231980847 + MIR SINE MIR 10 212 -50 387 284 17 17 chr1 50213198 50213314 -231980350 + L2 LINE L2 3156 3271 -1 252 238 32 0 chr1 50214668 50214731 -231978933 + (TTCA)n Simple_repeat Simple_repeat 3 67 0 432 293 30 18 chr1 50214973 50215137 -231978527 + L2 LINE L2 2898 3063 -209 183 244 49 0 chr1 50215484 50215525 -231978139 + L2 LINE L2 3180 3222 -91 321 109 0 0 chr1 50217417 50217472 -231976192 + (TG)n Simple_repeat Simple_repeat 1 55 0 238 297 55 0 chr1 50217738 50217829 -231975835 - MIR SINE MIR -62 146 51 398 274 39 0 chr1 50221996 50222098 -231971566 + MIR SINE MIR 60 165 -97 485 260 20 47 chr1 50222250 50222532 -231971132 + MLT1F1 LTR MaLR 1 300 -289 606 220 12 46 chr1 50222594 50222767 -231970897 + MLT1F1 LTR MaLR 395 561 -6 676 171 8 16 chr1 50223729 50223858 -231969806 + MIR SINE MIR 100 227 -35 247 288 13 85 chr1 50224576 50224729 -231968935 + L2 LINE L2 2914 3055 -217 507 250 31 0 chr1 50227234 50227362 -231966302 - L2 LINE L2 -2 3270 3139 187 324 88 0 chr1 50227463 50227565 -231966099 - L2 LINE L2 -1040 2274 2164 272 170 38 0 chr1 50227774 50227827 -231965837 - L2 LINE L2 0 3272 3218 204 135 0 0 chr1 50228008 50228045 -231965619 + (GCTG)n Simple_repeat Simple_repeat 4 40 0 1563 187 29 15 chr1 50228304 50228426 -231965238 + AluJb SINE Alu 1 120 -192 480 18 0 0 chr1 50228426 50228483 -231965181 + (CA)n Simple_repeat Simple_repeat 2 58 0 1563 187 29 15 chr1 50228483 50228633 -231965031 + AluJb SINE Alu 120 277 -35 528 93 0 0 chr1 50228634 50228709 -231964955 + (TAGA)n Simple_repeat Simple_repeat 1 75 0 297 197 66 0 chr1 50229394 50229470 -231964194 + MIR3 SINE MIR 112 192 -16 230 214 18 89 chr1 50230221 50230333 -231963331 + GA-rich Low_complexity Low_complexity 2 105 0 370 226 129 24 chr1 50234184 50234308 -231959356 - L2 LINE L2 0 3272 3136 1994 161 80 32 chr1 50234335 50234808 -231958856 + L1MB8 LINE L1 5677 6172 -6 282 343 36 15 chr1 50234968 50235105 -231958559 - L2 LINE L2 -211 3061 2922 513 237 15 23 chr1 50235330 50235461 -231958203 + L2 LINE L2 3184 3313 0 227 306 45 54 chr1 50235541 50235652 -231958012 + L2 LINE L2 3192 3301 -12 183 420 49 0 chr1 50236934 50237015 -231956649 + L2 LINE L2 3123 3207 -65 291 193 28 128 chr1 50237954 50238063 -231955601 - MIR3 SINE MIR -11 197 100 282 279 95 68 chr1 50238593 50238740 -231954924 + MIR SINE MIR 112 262 0 201 246 46 0 chr1 50239679 50239744 -231953920 - MIR SINE MIR -33 229 162 852 218 114 0 chr1 50240241 50240443 -231953221 + MIR SINE MIR 2 226 -36 396 332 0 37 chr1 50240400 50240587 -231953077 - MIR SINE MIR -57 205 26 * 539 317 24 6 chr1 50240878 50241045 -231952619 - MIR SINE MIR -72 190 21 298 295 63 11 chr1 50241072 50241167 -231952497 - MIR SINE MIR -142 120 21 1996 138 7 0 chr1 50241322 50241652 -231952012 + AluSx SINE Alu 1 332 0 327 240 66 66 chr1 50242111 50242232 -231951432 + MIR SINE MIR 19 139 -123 390 361 102 27 chr1 50242296 50242709 -231950955 - L2 LINE L2 -8 3264 2821 2035 144 62 31 chr1 50244624 50245040 -231948624 - MSTB1 LTR MaLR -3 429 1 218 295 42 11 chr1 50245118 50245213 -231948451 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 1934 308 101 22 chr1 50245216 50246507 -231947157 + L2 LINE L2 691 2082 -1232 525 296 12 24 chr1 50246522 50246691 -231946973 + MIR SINE MIR 48 214 -48 1582 146 66 30 chr1 50246693 50246964 -231946700 - Charlie5 DNA MER1_type 0 2624 2335 1946 168 10 0 chr1 50246964 50247267 -231946397 + AluSx SINE Alu 2 307 -5 1582 146 66 30 chr1 50247267 50247358 -231946306 - Charlie5 DNA MER1_type -289 2335 2249 2167 108 0 20 chr1 50247375 50247670 -231945994 - AluSx SINE Alu -23 289 1 611 200 8 0 chr1 50247678 50247808 -231945856 - MER3 DNA MER1_type -41 168 38 590 308 107 37 chr1 50247844 50247998 -231945666 + L2 LINE L2 2070 2212 -1102 2024 153 17 3 chr1 50247998 50248293 -231945371 - AluJo SINE Alu -13 299 1 590 308 107 37 chr1 50248293 50248541 -231945123 + L2 LINE L2 2212 2500 -814 283 333 0 11 chr1 50249117 50249210 -231944454 + L2 LINE L2 2535 2626 -688 344 264 89 65 chr1 50249216 50249410 -231944254 + MER20B DNA MER1_type 3 195 -24 421 270 173 58 chr1 50249436 50249662 -231944002 + L2 LINE L2 2630 2881 -433 * 525 240 25 0 chr1 50249661 50249782 -231943882 - L2 LINE L2 0 3313 3190 290 190 35 0 chr1 50250011 50250069 -231943595 + L2 LINE L2 3242 3301 -12 2041 168 0 0 chr1 50250073 50250371 -231943293 + AluJo SINE Alu 1 298 -14 203 0 37 0 chr1 50250371 50250398 -231943266 + (TA)n Simple_repeat Simple_repeat 2 29 0 411 73 0 0 chr1 50250638 50250693 -231942971 + (TG)n Simple_repeat Simple_repeat 2 56 0 287 369 101 39 chr1 50252003 50252361 -231941303 - L2 LINE L2 -6 3266 2887 244 200 0 62 chr1 50253455 50253535 -231940129 + A-rich Low_complexity Low_complexity 3 77 0 586 275 140 5 chr1 50253916 50254123 -231939541 - MIR SINE MIR -8 254 20 461 280 8 0 chr1 50254923 50255041 -231938623 - MER97c DNA MER1_type? -970 120 2 322 272 50 109 chr1 50255114 50255353 -231938311 - L2 LINE L2 -960 2354 2130 534 300 74 12 chr1 50255409 50255666 -231937998 - L3 LINE CR1 -134 1443 1171 455 356 14 18 chr1 50255869 50256088 -231937576 - L2 LINE L2 -1332 1982 1765 307 301 32 19 chr1 50257277 50257428 -231936236 - MIR SINE MIR -71 137 31 181 239 0 22 chr1 50258838 50258884 -231934780 + L2 LINE L2 2440 2484 -830 383 343 7 0 chr1 50262387 50262524 -231931140 - MIR SINE MIR -121 141 4 522 220 15 68 chr1 50266856 50266988 -231926676 + L2 LINE L2 3189 3313 0 1387 215 21 67 chr1 50267243 50267390 -231926274 + L1ME3 LINE L1 5743 5895 -267 1648 173 0 15 chr1 50267390 50267661 -231926003 + AluJb SINE Alu 1 267 -45 1387 215 21 67 chr1 50267661 50267945 -231925719 + L1ME3 LINE L1 5895 6154 -8 1685 178 24 34 chr1 50267945 50268243 -231925421 - AluJo SINE Alu -17 295 1 893 262 21 13 chr1 50271577 50271810 -231921854 + MIR SINE MIR 14 248 -14 345 227 13 0 chr1 50272194 50272269 -231921395 - L2 LINE L2 -2 3311 3236 1053 284 139 68 chr1 50272411 50273261 -231920403 - L2 LINE L2 -431 2883 1974 261 75 0 0 chr1 50276164 50276204 -231917460 + (CA)n Simple_repeat Simple_repeat 2 41 0 628 209 251 0 chr1 50276552 50276715 -231916949 + MIR SINE MIR 2 205 -57 2164 139 10 0 chr1 50277970 50278279 -231915385 + AluSx SINE Alu 1 312 0 2272 53 4 0 chr1 50278357 50278620 -231915044 - AluY SINE Alu -47 264 1 440 225 99 115 chr1 50278647 50278838 -231914826 + MIR SINE MIR 10 197 -65 378 258 156 23 chr1 50279109 50279237 -231914427 + L2 LINE L2 3168 3312 -1 315 0 0 0 chr1 50279721 50279756 -231913908 + (CA)n Simple_repeat Simple_repeat 1 35 0 224 284 47 76 chr1 50280665 50280964 -231912700 - L3 LINE CR1 -22 1555 1196 427 319 8 0 chr1 50283472 50283591 -231910073 - L2 LINE L2 -1 3312 3193 762 165 9 0 chr1 50284612 50284727 -231908937 + FLAM_C SINE Alu 2 117 -26 337 222 0 0 chr1 50284845 50284908 -231908756 - L3b LINE CR1 -200 1383 1321 243 0 0 0 chr1 50285884 50285911 -231907753 + (CA)n Simple_repeat Simple_repeat 1 27 0 471 347 184 0 chr1 50286266 50286554 -231907110 - L2 LINE L2 0 3272 2932 224 220 93 54 chr1 50287676 50287808 -231905856 + MIR SINE MIR 25 143 -65 24 0 0 0 chr1 50289554 50289578 -231904086 + AT_rich Low_complexity Low_complexity 1 24 0 205 310 84 42 chr1 50291927 50292069 -231901595 - L2 LINE L2 -3 3269 3122 197 314 81 0 chr1 50292223 50292309 -231901355 - L2 LINE L2 -12 3301 3209 639 258 112 0 chr1 50292397 50292575 -231901089 - MIR SINE MIR -12 250 53 199 255 85 57 chr1 50292823 50292929 -231900735 + L2 LINE L2 3163 3271 -1 314 310 53 26 chr1 50292994 50293107 -231900557 - MIR3 SINE MIR -87 121 6 2581 59 0 3 chr1 50293220 50293526 -231900138 - AluY SINE Alu -6 305 1 2371 81 3 3 chr1 50293820 50294117 -231899547 - AluSg SINE Alu -13 297 1 1980 141 45 0 chr1 50294400 50294691 -231898973 - AluSx SINE Alu -8 304 1 1033 263 40 0 chr1 50296160 50296411 -231897253 - MIR SINE MIR 0 262 2 796 170 13 46 chr1 50297104 50297257 -231896407 + MER5A DNA MER1_type 42 189 0 446 189 78 0 chr1 50297364 50297454 -231896210 - MER5A DNA MER1_type -83 106 10 213 284 88 20 chr1 50298723 50298825 -231894839 + L2 LINE L2 2554 2662 -652 353 294 30 99 chr1 50300612 50300813 -231892851 + L2 LINE L2 3042 3228 -44 1871 156 3 49 chr1 50303801 50304127 -231889537 + AluJb SINE Alu 2 312 0 2095 92 27 76 chr1 50304220 50304548 -231889116 + AluSp SINE Alu 1 312 -1 236 288 140 42 chr1 50304618 50304903 -231888761 - L3b LINE CR1 -168 1415 1103 686 355 88 36 chr1 50305217 50305603 -231888061 - L3 LINE CR1 -1132 445 40 2715 185 15 17 chr1 50306925 50307461 -231886203 - MLT1F LTR MaLR -7 535 1 312 91 0 0 chr1 50308082 50308126 -231885538 + (A)n Simple_repeat Simple_repeat 1 44 0 748 217 113 35 chr1 50309893 50310108 -231883556 + MIR SINE MIR 37 262 0 1849 144 4 11 chr1 50310346 50310623 -231883041 + AluJo SINE Alu 1 275 -37 261 0 0 0 chr1 50310631 50310660 -231883004 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2006 185 161 20 chr1 50311102 50311388 -231882276 + L1MC4 LINE L1 6459 6703 -1339 1830 167 0 39 chr1 50311388 50311554 -231882110 - AluJo SINE Alu -12 300 150 342 0 0 0 chr1 50311554 50311592 -231882072 + (TA)n Simple_repeat Simple_repeat 2 39 0 1830 167 0 39 chr1 50311592 50311737 -231881927 - AluJo SINE Alu -162 150 1 2006 185 161 20 chr1 50311737 50311995 -231881669 + L1MC4 LINE L1 6703 7080 -962 2841 175 92 7 chr1 50311998 50312608 -231881056 + L1MC4 LINE L1 7240 7901 -141 1933 141 18 0 chr1 50312685 50313008 -231880656 + AluSx SINE Alu 1 328 0 262 292 143 13 chr1 50314491 50314645 -231879019 - MIR3 SINE MIR -13 195 22 268 240 124 16 chr1 50315516 50315637 -231878027 + MIR SINE MIR 129 262 0 275 308 77 8 chr1 50315657 50315787 -231877877 - MIR SINE MIR -6 256 118 23 33 0 0 chr1 50315996 50316026 -231877638 + AT_rich Low_complexity Low_complexity 1 30 0 274 362 43 0 chr1 50316193 50316331 -231877333 + L2 LINE L2 2917 3060 -212 261 0 0 0 chr1 50316607 50316636 -231877028 + (TG)n Simple_repeat Simple_repeat 2 30 0 432 261 87 0 chr1 50316683 50316798 -231876866 + L2 LINE L2 3148 3272 0 213 197 0 0 chr1 50316943 50317004 -231876660 + GA-rich Low_complexity Low_complexity 2 62 0 367 276 18 49 chr1 50317552 50317755 -231875909 + MIR SINE MIR 59 250 -12 2078 103 3 29 chr1 50317878 50318190 -231875474 - AluSx SINE Alu -8 304 1 24 32 0 0 chr1 50318388 50318419 -231875245 + AT_rich Low_complexity Low_complexity 1 31 0 452 197 172 0 chr1 50318440 50318562 -231875102 - MIR SINE MIR -38 224 82 2242 105 0 0 chr1 50318995 50319291 -231874373 - AluSx SINE Alu -16 296 1 559 193 109 0 chr1 50319495 50319614 -231874050 - FLAM_C SINE Alu -10 133 2 457 257 20 72 chr1 50319680 50319766 -231873898 + L2 LINE L2 2614 2690 -624 2214 101 3 0 chr1 50319766 50320062 -231873602 - AluSx SINE Alu -15 297 1 457 257 20 72 chr1 50320062 50320127 -231873537 + L2 LINE L2 2690 2757 -557 936 172 65 51 chr1 50320145 50320360 -231873304 + MER58A DNA MER1_type 1 218 -6 565 283 9 87 chr1 50320619 50320849 -231872815 + L2 LINE L2 3027 3238 -34 513 196 78 0 chr1 50321033 50321135 -231872529 + FLAM_A SINE Alu 1 110 -32 429 20 0 0 chr1 50321135 50321185 -231872479 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 27 49 0 0 chr1 50323837 50323878 -231869786 + GC_rich Low_complexity Low_complexity 1 41 0 397 333 40 0 chr1 50324954 50325128 -231868536 + L2 LINE L2 3131 3311 -2 289 324 46 9 chr1 50325248 50325356 -231868308 - L2 LINE L2 -2 3311 3200 1326 186 0 4 chr1 50325372 50325609 -231868055 + AluJb SINE Alu 1 236 -76 870 159 0 0 chr1 50326082 50326214 -231867450 + FLAM_C SINE Alu 1 132 -1 635 188 7 51 chr1 50326293 50326431 -231867233 + FLAM_A SINE Alu 1 132 -1 2378 89 0 0 chr1 50327021 50327325 -231866339 - AluSp SINE Alu -9 304 1 604 265 196 0 chr1 50327561 50327765 -231865899 + MIR SINE MIR 19 262 0 1566 161 43 43 chr1 50328988 50329293 -231864371 - AluJb SINE Alu -7 305 1 2395 67 3 0 chr1 50329414 50329714 -231863950 + AluSg SINE Alu 1 301 -9 297 256 107 50 chr1 50329799 50329920 -231863744 + MIR SINE MIR 8 135 -127 267 116 47 0 chr1 50330066 50330109 -231863555 + MIR SINE MIR 106 150 -112 2159 107 3 0 chr1 50330595 50330903 -231862761 + AluSp SINE Alu 1 309 -4 209 292 148 44 chr1 50331783 50332033 -231861631 + L2 LINE L2 2831 3106 -166 906 337 51 56 chr1 50332241 50332793 -231860871 - L2 LINE L2 -1 3271 2728 564 239 168 0 chr1 50332793 50332948 -231860716 - MER5A DNA MER1_type 0 189 9 953 296 28 8 chr1 50333522 50333769 -231859895 + MIR SINE MIR 11 262 0 240 346 0 10 chr1 50335214 50335318 -231858346 + MIR SINE MIR 35 137 -71 210 256 12 37 chr1 50336276 50336358 -231857306 + GA-rich Low_complexity Low_complexity 4 83 0 201 289 94 25 chr1 50337420 50337579 -231856085 - L2 LINE L2 -188 3084 2915 291 347 0 0 chr1 50337803 50337901 -231855763 + MIR SINE MIR 158 255 -7 2042 70 0 94 chr1 50337902 50338231 -231855433 - AluSx SINE Alu -14 298 1 183 80 0 0 chr1 50338911 50338936 -231854728 + (CATA)n Simple_repeat Simple_repeat 1 25 0 787 259 67 9 chr1 50338984 50339208 -231854456 + MIR SINE MIR 1 237 -25 834 145 23 0 chr1 50339375 50339506 -231854158 + AluJo SINE Alu 1 134 -178 1964 339 53 20 chr1 50339510 50340719 -231852945 + HERVL LTR ERVL 3390 4662 -992 372 175 0 0 chr1 50340734 50340791 -231852873 + MER20 DNA MER1_type 4 60 -159 2100 96 7 7 chr1 50340849 50341140 -231852524 + AluSg SINE Alu 1 291 -19 2015 141 0 3 chr1 50341140 50341446 -231852218 + AluSq SINE Alu 1 305 -8 750 145 52 93 chr1 50341448 50341620 -231852044 + MER20 DNA MER1_type 55 219 0 417 298 97 0 chr1 50341621 50341745 -231851919 + HERVL LTR ERVL 4669 4804 -850 2302 97 3 0 chr1 50342360 50342669 -231850995 + AluSx SINE Alu 1 310 -2 1561 254 61 20 chr1 50342734 50343143 -231850521 + LTR16A LTR ERVL 25 450 0 1899 106 19 162 chr1 50343166 50343592 -231850072 + MLT1A1 LTR MaLR 1 365 0 932 236 33 97 chr1 50343592 50344054 -231849610 - L2 LINE L2 -93 3220 2802 2234 83 7 0 chr1 50344054 50344355 -231849309 - AluSp SINE Alu -10 303 1 932 236 33 97 chr1 50344355 50344381 -231849283 - L2 LINE L2 -511 2802 2776 341 278 12 116 chr1 50344438 50344611 -231849053 + L2 LINE L2 3030 3184 -88 1969 121 0 35 chr1 50345021 50345336 -231848328 - AluSq SINE Alu -9 304 1 205 241 35 0 chr1 50345565 50345623 -231848041 + L2 LINE L2 3246 3305 -8 767 311 24 12 chr1 50345663 50345914 -231847750 + MIR SINE MIR 2 255 -7 1422 18 0 0 chr1 50348482 50348645 -231845019 - L1PA2 LINE L1 0 6155 5993 873 280 98 0 chr1 50348688 50348924 -231844740 + MIR SINE MIR 4 262 0 1790 214 151 30 chr1 50349940 50350266 -231843398 + Charlie7 DNA MER1_type 44 329 -2283 2354 68 0 3 chr1 50350266 50350561 -231843103 + AluSq SINE Alu 4 297 -16 1790 214 151 30 chr1 50350561 50350809 -231842855 + Charlie7 DNA MER1_type 329 688 -1924 386 185 118 25 chr1 50350778 50350897 -231842767 + Charlie7 DNA MER1_type 2482 2611 -1 * 22 0 0 0 chr1 50351114 50351136 -231842528 + AT_rich Low_complexity Low_complexity 1 22 0 222 259 56 0 chr1 50351416 50351470 -231842194 + L2 LINE L2 2605 2661 -653 691 282 106 41 chr1 50352290 50352734 -231840930 + L1ME LINE L1 5004 5480 -748 1309 172 133 53 chr1 50352748 50353086 -231840578 - MLT1A1 LTR MaLR 0 365 1 328 280 32 0 chr1 50353111 50353204 -231840460 + L1ME LINE L1 5476 5571 -550 370 266 37 9 chr1 50353215 50353324 -231840340 - HAL1b LINE L1 -799 549 438 1219 249 71 57 chr1 50353348 50353628 -231840036 - HAL1b LINE L1 -698 650 376 198 0 0 0 chr1 50353628 50353650 -231840014 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2399 45 3 0 chr1 50353650 50353938 -231839726 - L1PA3 LINE L1 -18 6137 5849 1219 249 71 57 chr1 50353938 50354097 -231839567 - HAL1b LINE L1 -972 376 221 2314 75 3 0 chr1 50354097 50354405 -231839259 + AluY SINE Alu 2 310 -1 1219 249 71 57 chr1 50354405 50354480 -231839184 - HAL1b LINE L1 -1127 221 123 1884 143 13 0 chr1 50354480 50354788 -231838876 - AluJo SINE Alu 0 312 1 1219 249 71 57 chr1 50354788 50354819 -231838845 - HAL1b LINE L1 -1225 123 94 343 328 72 25 chr1 50354828 50355034 -231838630 - L1MEc LINE L1 -5190 1206 986 1753 102 0 0 chr1 50355034 50355269 -231838395 - AluSx SINE Alu -77 235 1 343 328 72 25 chr1 50355269 50355297 -231838367 - L1MEc LINE L1 -5410 986 961 209 274 19 47 chr1 50355324 50355430 -231838234 + CT-rich Low_complexity Low_complexity 3 105 0 636 285 36 40 chr1 50355765 50356042 -231837622 + L2 LINE L2 3021 3296 -17 441 272 82 64 chr1 50356042 50356119 -231837545 - L1ME LINE L1 -382 5739 5665 1290 51 0 0 chr1 50356119 50356277 -231837387 - L1PA8 LINE L1 -14 6158 6001 441 272 82 64 chr1 50356277 50356502 -231837162 - L1ME LINE L1 -456 5665 5434 302 264 151 48 chr1 50356511 50356974 -231836690 - L1ME LINE L1 -755 5391 4881 247 276 66 0 chr1 50356975 50357051 -231836613 - MIR SINE MIR -10 252 172 2863 169 24 4 chr1 50357126 50357594 -231836070 - MLT2B2 LTR ERVL -38 477 1 181 182 236 0 chr1 50357663 50357718 -231835946 + L2 LINE L2 3241 3308 -5 669 322 162 32 chr1 50357723 50358192 -231835472 - L2 LINE L2 -703 2611 2082 764 302 206 16 chr1 50358198 50358996 -231834668 - L2 LINE L2 -2148 1166 218 627 102 31 20 chr1 50359444 50359542 -231834122 + U6 snRNA snRNA 7 105 -2 2152 97 3 16 chr1 50359563 50359874 -231833790 - AluSg SINE Alu -3 307 1 451 122 14 0 chr1 50360466 50360540 -231833124 + HsTC2 DNA Tc2 1 75 -1823 264 244 61 24 chr1 50360569 50360651 -231833013 + L2 LINE L2 3227 3311 -2 2049 125 23 0 chr1 50360798 50361103 -231832561 + AluSx SINE Alu 1 312 0 22 56 0 0 chr1 50361137 50361173 -231832491 + AT_rich Low_complexity Low_complexity 1 36 0 2053 84 0 45 chr1 50361906 50362214 -231831450 - AluSc SINE Alu -15 294 1 291 272 72 48 chr1 50362256 50362381 -231831283 + MIR SINE MIR 64 191 -71 2267 92 3 0 chr1 50362459 50362763 -231830901 + AluSp SINE Alu 1 305 -8 396 241 86 35 chr1 50362879 50362995 -231830669 + MER94 DNA DNA 2 123 -11 285 359 31 8 chr1 50363289 50363417 -231830247 - L2 LINE L2 -1 3312 3182 1713 141 10 27 chr1 50363439 50363736 -231829928 + AluJb SINE Alu 21 312 0 1112 327 179 35 chr1 50363911 50364388 -231829276 - L2 LINE L2 -10 3262 2855 2016 106 10 0 chr1 50364388 50364680 -231828984 - AluSp SINE Alu -3 310 16 1112 327 179 35 chr1 50364680 50364836 -231828828 - L2 LINE L2 -417 2855 2723 2315 100 27 0 chr1 50364836 50365136 -231828528 + AluSp SINE Alu 1 308 -5 1112 327 179 35 chr1 50365136 50366138 -231827526 - L2 LINE L2 -549 2723 1394 655 261 138 0 chr1 50366520 50366738 -231826926 - MIR SINE MIR -12 250 3 2364 26 0 0 chr1 50366895 50367191 -231826473 + L1PA3 LINE L1 5871 6166 0 409 181 202 0 chr1 50368098 50368192 -231825472 - L2 LINE L2 -1 3271 3159 198 390 8 0 chr1 50368397 50368515 -231825149 + L2 LINE L2 2626 2744 -570 274 291 86 34 chr1 50368515 50368632 -231825032 - L2 LINE L2 0 3272 3150 236 246 46 15 chr1 50368872 50368937 -231824727 - L2 LINE L2 -220 3052 2986 308 333 52 0 chr1 50369392 50369488 -231824176 + L2 LINE L2 2929 3029 -243 332 336 164 0 chr1 50369678 50369800 -231823864 + L2 LINE L2 3123 3264 -8 539 310 61 0 chr1 50370374 50370587 -231823077 - L1ME4a LINE L1 -90 6031 5806 701 324 74 39 chr1 50371162 50371619 -231822045 + L2 LINE L2 2446 2918 -396 199 216 118 0 chr1 50371605 50371656 -231822008 + L2 LINE L2 3216 3272 0 * 429 306 0 8 chr1 50371673 50371807 -231821857 - MER94 DNA DNA 0 134 2 218 250 0 0 chr1 50371844 50371884 -231821780 + L2 LINE L2 3137 3176 -96 245 330 217 0 chr1 50371904 50372010 -231821654 - L2 LINE L2 -1 3271 3143 2083 128 34 0 chr1 50372098 50372396 -231821268 + AluSx SINE Alu 1 308 -4 1800 74 66 4 chr1 50372765 50373009 -231820655 - AluSg SINE Alu -11 299 41 410 226 129 24 chr1 50376200 50376324 -231817340 - L2 LINE L2 0 3272 3136 1984 162 80 34 chr1 50376351 50376825 -231816839 + L1MB8 LINE L1 5677 6172 -6 312 343 36 15 chr1 50376985 50377122 -231816542 - L2 LINE L2 -211 3061 2922 545 237 15 23 chr1 50377347 50377478 -231816186 + L2 LINE L2 3184 3313 0 241 306 45 54 chr1 50377558 50377669 -231815995 + L2 LINE L2 3192 3301 -12 200 420 49 0 chr1 50378951 50379032 -231814632 + L2 LINE L2 3123 3207 -65 321 193 28 128 chr1 50379981 50380090 -231813574 - MIR3 SINE MIR -11 197 100 310 303 146 54 chr1 50380582 50380767 -231812897 + MIR SINE MIR 61 262 0 215 246 46 0 chr1 50381706 50381771 -231811893 - MIR SINE MIR -33 229 162 208 320 136 0 chr1 50382072 50382219 -231811445 + L2 LINE L2 2892 3058 -214 910 218 114 0 chr1 50382268 50382470 -231811194 + MIR SINE MIR 2 226 -36 460 267 22 44 chr1 50382479 50382614 -231811050 - MIR SINE MIR -105 157 26 577 317 24 6 chr1 50382905 50383072 -231810592 - MIR SINE MIR -72 190 21 325 295 63 11 chr1 50383099 50383194 -231810470 - MIR SINE MIR -142 120 21 1982 138 7 0 chr1 50383349 50383674 -231809990 + AluSx SINE Alu 1 327 0 354 231 68 68 chr1 50384133 50384250 -231809414 + MIR SINE MIR 19 135 -127 472 336 117 28 chr1 50384318 50384760 -231808904 - L2 LINE L2 -8 3264 2798 2229 139 62 31 chr1 50386646 50387062 -231806602 - MSTB1 LTR MaLR -3 429 1 218 295 42 11 chr1 50387140 50387235 -231806429 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 2149 308 101 22 chr1 50387238 50388529 -231805135 + L2 LINE L2 691 2082 -1232 394 319 21 21 chr1 50388544 50388688 -231804976 + MIR SINE MIR 48 191 -71 1508 153 66 36 chr1 50388716 50388989 -231804675 - Charlie5 DNA MER1_type 0 2624 2336 1944 168 10 0 chr1 50388989 50389292 -231804372 + AluSx SINE Alu 2 307 -5 1508 153 66 36 chr1 50389292 50389383 -231804281 - Charlie5 DNA MER1_type -288 2336 2249 2158 108 0 20 chr1 50389400 50389695 -231803969 - AluSx SINE Alu -23 289 1 608 200 8 0 chr1 50389703 50389833 -231803831 - MER3 DNA MER1_type -41 168 38 662 308 107 37 chr1 50389869 50390023 -231803641 + L2 LINE L2 2070 2212 -1102 2021 153 17 3 chr1 50390023 50390318 -231803346 - AluJo SINE Alu -13 299 1 662 308 107 37 chr1 50390318 50390566 -231803098 + L2 LINE L2 2212 2500 -814 302 333 0 11 chr1 50391142 50391235 -231802429 + L2 LINE L2 2535 2626 -688 324 258 89 65 chr1 50391241 50391435 -231802229 + MER20B DNA MER1_type 3 195 -24 482 270 173 58 chr1 50391461 50391687 -231801977 + L2 LINE L2 2630 2881 -433 * 557 240 25 0 chr1 50391686 50391807 -231801857 - L2 LINE L2 0 3313 3190 318 260 264 48 chr1 50391867 50392094 -231801570 + L2 LINE L2 2985 3260 -12 2053 167 0 0 chr1 50392098 50392398 -231801266 + AluJo SINE Alu 1 300 -12 275 0 29 0 chr1 50392398 50392433 -231801231 + (TA)n Simple_repeat Simple_repeat 2 37 0 519 60 0 0 chr1 50392673 50392740 -231800924 + (TG)n Simple_repeat Simple_repeat 2 68 0 354 310 124 70 chr1 50394050 50394453 -231799211 - L2 LINE L2 -6 3266 2842 244 200 0 62 chr1 50395502 50395582 -231798082 + A-rich Low_complexity Low_complexity 3 77 0 636 275 140 5 chr1 50395963 50396170 -231797494 - MIR SINE MIR -8 254 20 180 342 40 0 chr1 50396706 50396782 -231796882 - L2 LINE L2 -600 2714 2636 438 280 8 0 chr1 50396970 50397088 -231796576 - MER97c DNA MER1_type? -970 120 2 343 272 50 109 chr1 50397161 50397400 -231796264 - L2 LINE L2 -960 2354 2130 569 294 77 12 chr1 50397456 50397704 -231795960 - L3 LINE CR1 -134 1443 1180 489 329 32 36 chr1 50397916 50398135 -231795529 - L2 LINE L2 -1332 1982 1765 352 287 97 21 chr1 50399328 50399479 -231794185 - MIR3 SINE MIR -29 179 31 189 239 0 22 chr1 50400889 50400935 -231792729 + L2 LINE L2 2440 2484 -830 432 336 7 0 chr1 50404438 50404575 -231789089 - MIR SINE MIR -121 141 4 522 220 15 68 chr1 50408907 50409039 -231784625 + L2 LINE L2 3189 3313 0 1403 213 21 67 chr1 50409294 50409441 -231784223 + L1ME3 LINE L1 5743 5895 -267 1635 177 0 15 chr1 50409441 50409712 -231783952 + AluJb SINE Alu 1 267 -45 1403 213 21 67 chr1 50409712 50409996 -231783668 + L1ME3 LINE L1 5895 6154 -8 1685 178 24 34 chr1 50409996 50410294 -231783370 - AluJo SINE Alu -17 295 1 893 262 21 13 chr1 50413628 50413861 -231779803 + MIR SINE MIR 14 248 -14 360 227 13 0 chr1 50414245 50414320 -231779344 - L2 LINE L2 -2 3311 3236 1053 284 139 68 chr1 50414462 50415312 -231778352 - L2 LINE L2 -431 2883 1974 261 75 0 0 chr1 50418215 50418255 -231775409 + (CA)n Simple_repeat Simple_repeat 2 41 0 618 215 251 0 chr1 50418603 50418766 -231774898 + MIR SINE MIR 2 205 -57 2242 134 0 0 chr1 50420021 50420327 -231773337 + AluSp SINE Alu 1 306 -7 858 150 0 0 chr1 50420383 50420503 -231773161 - FLAM_C SINE Alu -23 120 1 486 301 89 71 chr1 50420511 50420894 -231772770 - HAL1b LINE L1 -534 814 439 2252 107 0 3 chr1 50420894 50421192 -231772472 - AluSx SINE Alu -15 297 1 486 301 89 71 chr1 50421192 50421550 -231772114 - HAL1b LINE L1 -909 439 60 2392 87 0 7 chr1 50421550 50421848 -231771816 - AluSx SINE Alu -7 305 10 328 232 101 124 chr1 50421849 50422135 -231771529 - HAL1b LINE L1 -1084 966 766 1649 186 10 10 chr1 50422135 50422426 -231771238 + AluJb SINE Alu 1 291 -21 328 232 101 124 chr1 50422426 50422473 -231771191 - HAL1b LINE L1 -1284 766 719 2379 96 0 0 chr1 50422704 50422997 -231770667 + AluSx SINE Alu 11 303 -9 2526 57 7 0 chr1 50423081 50423380 -231770284 - AluY SINE Alu -10 301 1 1019 285 65 3 chr1 50423909 50424218 -231769446 + LTR16A LTR ERVL 115 442 -8 440 141 24 0 chr1 50424265 50424350 -231769314 - LTR54 LTR ERV1 -17 493 407 1877 174 3 19 chr1 50424582 50424898 -231768766 + AluJo SINE Alu 1 311 -1 2482 74 3 0 chr1 50425026 50425322 -231768342 - AluSp SINE Alu -16 297 1 404 315 61 30 chr1 50425803 50425909 -231767755 - L1M4 LINE L1 -2142 4004 3888 2105 146 10 0 chr1 50425909 50426218 -231767446 - AluJb SINE Alu 0 312 1 404 315 61 30 chr1 50426218 50426308 -231767356 - L1M4 LINE L1 -2258 3888 3802 968 284 79 44 chr1 50426308 50426934 -231766730 - L1M4 LINE L1 -1710 4436 3834 2201 137 0 0 chr1 50426934 50427233 -231766431 - AluSx SINE Alu -13 299 1 968 284 79 44 chr1 50427233 50427265 -231766399 - L1M4 LINE L1 -2312 3834 3805 1578 188 24 13 chr1 50427265 50427563 -231766101 - AluJo SINE Alu -11 301 1 968 284 79 44 chr1 50427563 50427700 -231765964 - L1M4 LINE L1 -2341 3805 3606 1446 161 96 31 chr1 50427700 50427992 -231765672 - AluJo SINE Alu -1 311 1 968 284 79 44 chr1 50427992 50428042 -231765622 - L1M4 LINE L1 -2540 3606 3559 1913 82 41 0 chr1 50428155 50428428 -231765236 + AluSq SINE Alu 31 313 0 619 163 6 6 chr1 50429340 50429486 -231764178 - MER8 DNA MER2_type 0 239 4 437 109 16 0 chr1 50429658 50429722 -231763942 + AluSg/x SINE Alu 216 280 -32 703 0 23 0 chr1 50429722 50429809 -231763855 + (TAAAA)n Simple_repeat Simple_repeat 1 89 0 1475 140 53 4 chr1 50430009 50430252 -231763412 + AluJo SINE Alu 50 304 -8 186 133 0 0 chr1 50430252 50430282 -231763382 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 805 181 27 110 chr1 50430286 50430489 -231763175 + L1M4 LINE L1 2505 2678 -3468 2311 90 21 0 chr1 50430489 50430778 -231762886 - AluSx SINE Alu -17 295 1 805 181 27 110 chr1 50430778 50430866 -231762798 + L1M4 LINE L1 2678 2772 -3374 1869 177 3 19 chr1 50430869 50431185 -231762479 + AluJo SINE Alu 1 311 -1 341 255 66 0 chr1 50431201 50431307 -231762357 + L1M4 LINE L1 2937 3049 -3097 1102 317 72 40 chr1 50431308 50431468 -231762196 - ERVL LTR ERVL -2258 3506 3352 1925 154 7 10 chr1 50431468 50431761 -231761903 - AluJo SINE Alu -18 294 3 1102 317 72 40 chr1 50431761 50432145 -231761519 - ERVL LTR ERVL -2412 3352 2945 27 29 0 0 chr1 50432856 50432890 -231760774 + AT_rich Low_complexity Low_complexity 1 34 0 270 180 0 0 chr1 50433280 50433341 -231760323 + (TG)n Simple_repeat Simple_repeat 2 62 0 288 154 0 0 chr1 50433494 50433546 -231760118 + (CCG)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr1 50436025 50436046 -231757618 + GC_rich Low_complexity Low_complexity 1 21 0 203 200 0 0 chr1 50437983 50438018 -231755646 + A-rich Low_complexity Low_complexity 1 35 0 209 328 0 0 chr1 50440025 50440086 -231753578 + CT-rich Low_complexity Low_complexity 5 65 0 180 0 0 0 chr1 50443614 50443634 -231750030 + (CA)n Simple_repeat Simple_repeat 2 21 0 24 67 0 0 chr1 50443713 50443758 -231749906 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 50447628 50447650 -231746014 + AT_rich Low_complexity Low_complexity 1 22 0 640 261 113 17 chr1 50448748 50448986 -231744678 + MIR SINE MIR 2 262 0 2353 119 0 0 chr1 50500987 50501299 -231692365 + AluSx SINE Alu 1 312 0 978 213 58 0 chr1 50501557 50501782 -231691882 - MIR SINE MIR 0 262 25 237 156 0 44 chr1 50501856 50501901 -231691763 - MIR SINE MIR -24 238 196 219 278 72 41 chr1 50501996 50502093 -231691571 + L2 LINE L2 3141 3240 -32 607 222 6 42 chr1 50502232 50502399 -231691265 + MIR SINE MIR 102 262 0 533 336 71 25 chr1 50504244 50504598 -231689066 + L1MC4a LINE L1 5478 5847 -1961 23 78 0 0 chr1 50504809 50504860 -231688804 + AT_rich Low_complexity Low_complexity 1 51 0 924 139 94 6 chr1 50504861 50505041 -231688623 + L1MC3 LINE L1 7544 7739 -46 1104 97 0 69 chr1 50505148 50505323 -231688341 + AluSg/x SINE Alu 140 302 -7 2226 121 3 0 chr1 50506063 50506369 -231687295 - AluSx SINE Alu -5 307 1 1012 172 0 0 chr1 50506382 50506533 -231687131 - FAM SINE Alu -27 158 8 2646 187 70 90 chr1 50506543 50506744 -231686920 + MER97a DNA MER1_type? 113 317 -577 2075 105 0 32 chr1 50506744 50507029 -231686635 - AluSx SINE Alu -36 276 1 2646 187 70 90 chr1 50507029 50507488 -231686176 + MER97a DNA MER1_type? 317 758 -136 1855 146 33 0 chr1 50507488 50507787 -231685877 + AluSx SINE Alu 1 308 0 2646 187 70 90 chr1 50507787 50507909 -231685755 + MER97a DNA MER1_type? 758 881 -13 516 300 67 43 chr1 50507978 50508226 -231685438 - L2 LINE L2 -361 2953 2694 2425 53 7 30 chr1 50508226 50508529 -231685135 + AluY SINE Alu 1 296 -15 516 300 67 43 chr1 50508529 50508607 -231685057 - L2 LINE L2 -620 2694 2619 1343 157 4 34 chr1 50508607 50508842 -231684822 + AluJo SINE Alu 69 296 -16 458 306 64 34 chr1 50509011 50509246 -231684418 + MIR SINE MIR 20 261 -1 2219 122 26 0 chr1 50509447 50509750 -231683914 + AluSx SINE Alu 1 311 -1 376 203 118 52 chr1 50511610 50511763 -231681901 + MIR SINE MIR 18 180 -82 1840 163 17 23 chr1 50511931 50512232 -231681432 - AluJo SINE Alu -13 299 1 465 241 45 0 chr1 50512306 50512418 -231681246 - L2 LINE L2 0 3313 3197 739 311 164 22 chr1 50512564 50513241 -231680423 - L1ME4a LINE L1 -103 6018 5255 210 136 0 0 chr1 50513332 50513376 -231680288 + (TTTTA)n Simple_repeat Simple_repeat 5 48 0 332 133 0 0 chr1 50513377 50513422 -231680242 - MER66B LTR ERV1 -147 339 295 334 355 30 0 chr1 50513741 50513907 -231679757 - L2 LINE L2 -183 3089 2919 180 97 0 0 chr1 50513951 50513982 -231679682 + (TTAAA)n Simple_repeat Simple_repeat 2 32 0 676 217 0 0 chr1 50513982 50514111 -231679553 - MER3 DNA MER1_type -80 129 1 202 325 0 24 chr1 50514121 50514204 -231679460 - L2 LINE L2 -397 2917 2837 484 241 76 14 chr1 50514324 50514492 -231679172 - MIR SINE MIR -62 146 1 373 333 64 7 chr1 50515572 50515713 -231677951 - L2 LINE L2 -2 3270 3122 413 303 5 43 chr1 50515808 50515936 -231677728 + L2 LINE L2 2204 2335 -979 1810 158 3 48 chr1 50515936 50516252 -231677412 - AluJb SINE Alu -10 302 1 413 303 5 43 chr1 50516252 50516324 -231677340 + L2 LINE L2 2335 2398 -916 1907 162 0 10 chr1 50516324 50516626 -231677038 - AluJb SINE Alu -13 299 1 208 369 27 0 chr1 50516659 50516770 -231676894 + L2 LINE L2 2376 2489 -825 211 391 109 9 chr1 50516903 50517363 -231676301 + L2 LINE L2 2257 2762 -552 484 234 66 82 chr1 50517495 50517618 -231676046 - L1ME3A LINE L1 0 6170 6050 2327 78 0 0 chr1 50517618 50517900 -231675764 + AluSx SINE Alu 1 305 0 187 43 0 0 chr1 50517900 50517923 -231675741 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 484 234 66 82 chr1 50517923 50518042 -231675622 - L1ME3A LINE L1 -120 6050 5931 1615 293 42 11 chr1 50518080 50518238 -231675426 - L1ME3A LINE L1 -220 5950 5798 1954 167 3 3 chr1 50518238 50518550 -231675114 - AluJb SINE Alu 0 312 1 1615 293 42 11 chr1 50518550 50519029 -231674635 - L1ME3A LINE L1 -372 5798 5293 230 250 105 26 chr1 50519658 50519734 -231673930 + L2 LINE L2 3160 3241 -31 184 291 18 0 chr1 50519703 50519758 -231673906 + MIR SINE MIR 207 262 0 * 190 359 84 15 chr1 50519998 50520129 -231673535 + L3 LINE CR1 768 907 -670 2536 64 3 0 chr1 50520369 50520664 -231673000 - AluSg SINE Alu -14 296 1 303 324 171 6 chr1 50521012 50521188 -231672476 + MIR SINE MIR 20 224 -38 253 357 14 7 chr1 50521186 50521326 -231672338 + L2 LINE L2 2522 2662 -652 * 368 323 114 5 chr1 50521438 50521639 -231672025 - MIR SINE MIR -19 243 21 1990 106 39 3 chr1 50521828 50522110 -231671554 + AluSx SINE Alu 1 292 -20 226 287 9 43 chr1 50522761 50522876 -231670788 + L2 LINE L2 2246 2356 -958 187 273 122 0 chr1 50522904 50523003 -231670661 + MIR SINE MIR 2 105 -103 1179 183 10 0 chr1 50523202 50523410 -231670254 - AluJo SINE Alu -98 214 5 211 320 13 13 chr1 50523446 50523524 -231670140 - L2 LINE L2 -4 3268 3191 2341 72 10 3 chr1 50523631 50523923 -231669741 + AluSp SINE Alu 1 294 -19 845 270 80 90 chr1 50524051 50524615 -231669049 - L1MC4a LINE L1 -22 6099 5531 2485 61 0 0 chr1 50524615 50524912 -231668752 + AluY SINE Alu 11 307 -4 845 270 80 90 chr1 50524912 50525311 -231668353 - L1MC4a LINE L1 -590 5531 5142 2259 97 6 10 chr1 50525311 50525622 -231668042 - AluSg SINE Alu 0 310 1 845 270 80 90 chr1 50525622 50525782 -231667882 - L1MC4a LINE L1 -979 5142 4982 274 246 27 64 chr1 50525851 50525961 -231667703 - L1MC4a LINE L1 -1310 4836 4731 1072 90 0 0 chr1 50525975 50526109 -231667555 + AluSq/x SINE Alu 1 134 -178 1080 97 0 0 chr1 50526210 50526354 -231667310 + AluSg/x SINE Alu 162 305 -5 1017 104 0 8 chr1 50526413 50526547 -231667117 - AluSq/x SINE Alu -180 133 1 558 308 121 33 chr1 50526588 50527564 -231666100 - L1MC4a LINE L1 -1444 4702 3641 623 154 100 8 chr1 50527568 50527698 -231665966 - Charlie1 DNA MER1_type 0 2761 2620 * 1082 203 20 49 chr1 50527682 50527928 -231665736 - Charlie1 DNA MER1_type -2522 239 1 416 301 86 61 chr1 50527984 50528426 -231665238 - L1MC4a LINE L1 -2579 3567 3115 884 210 51 2 chr1 50528451 50528902 -231664762 - L1ME1 LINE L1 -5 6161 5567 233 307 13 0 chr1 50529100 50529175 -231664489 + A-rich Low_complexity Low_complexity 5 80 0 605 179 0 0 chr1 50530258 50530364 -231663300 - L2 LINE L2 -8 3305 3200 263 383 17 23 chr1 50530416 50530591 -231663073 + L2 LINE L2 2649 2822 -492 207 258 32 0 chr1 50530756 50530849 -231662815 + (TTG)n Simple_repeat Simple_repeat 1 96 0 268 219 32 49 chr1 50530879 50531002 -231662662 + T-rich Low_complexity Low_complexity 2 122 0 201 259 0 0 chr1 50531217 50531271 -231662393 - L2 LINE L2 -4 3268 3215 2158 138 0 0 chr1 50531336 50531641 -231662023 - AluJo SINE Alu -7 305 1 284 248 75 63 chr1 50531868 50532198 -231661466 - L1ME4a LINE L1 -123 5998 5648 2369 76 13 3 chr1 50532346 50532649 -231661015 - AluSp SINE Alu -7 306 1 287 277 13 101 chr1 50532732 50532891 -231660773 + L2 LINE L2 3030 3174 -98 2112 118 0 35 chr1 50533315 50533630 -231660034 - AluSq SINE Alu -9 304 1 660 299 28 16 chr1 50533957 50534208 -231659456 + MIR SINE MIR 2 255 -7 331 21 0 0 chr1 50536825 50536872 -231656792 - L1PA3 LINE L1 -116 6039 5993 782 285 23 0 chr1 50536915 50537129 -231656535 + MIR SINE MIR 4 222 -40 1830 212 151 30 chr1 50538167 50538493 -231655171 + Charlie7 DNA MER1_type 44 329 -2283 2489 68 0 3 chr1 50538493 50538788 -231654876 + AluSq SINE Alu 4 297 -16 1830 212 151 30 chr1 50538788 50539036 -231654628 + Charlie7 DNA MER1_type 329 688 -1924 396 185 118 25 chr1 50539005 50539124 -231654540 + Charlie7 DNA MER1_type 2482 2611 -1 * 22 0 0 0 chr1 50539341 50539363 -231654301 + AT_rich Low_complexity Low_complexity 1 22 0 203 259 56 0 chr1 50539643 50539697 -231653967 + L2 LINE L2 2605 2661 -653 490 283 114 38 chr1 50540517 50540884 -231652780 + L1ME LINE L1 5004 5398 -748 1308 172 133 53 chr1 50540975 50541313 -231652351 - MLT1A1 LTR MaLR 0 365 1 334 280 32 0 chr1 50541338 50541431 -231652233 + L1ME LINE L1 5476 5571 -550 373 266 37 9 chr1 50541442 50541551 -231652113 - HAL1b LINE L1 -799 549 438 1194 237 88 42 chr1 50541575 50541855 -231651809 - HAL1b LINE L1 -698 650 384 198 0 0 0 chr1 50541855 50541877 -231651787 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2400 45 3 0 chr1 50541877 50542165 -231651499 - L1PA3 LINE L1 -18 6137 5849 1194 237 88 42 chr1 50542165 50542313 -231651351 - HAL1b LINE L1 -963 385 201 2032 87 4 0 chr1 50542327 50542593 -231651071 + AluY SINE Alu 6 272 -39 354 218 0 13 chr1 50542712 50542790 -231650874 + L2 LINE L2 3192 3268 -45 450 272 82 64 chr1 50542817 50542894 -231650770 - L1ME LINE L1 -382 5739 5665 1289 51 0 0 chr1 50542894 50543052 -231650612 - L1PA8 LINE L1 -14 6158 6001 450 272 82 64 chr1 50543052 50543277 -231650387 - L1ME LINE L1 -456 5665 5434 333 264 151 48 chr1 50543286 50543749 -231649915 - L1ME LINE L1 -755 5391 4881 217 276 66 0 chr1 50543750 50543826 -231649838 - MIR SINE MIR -10 252 172 2860 169 24 4 chr1 50543901 50544369 -231649295 - MLT2B2 LTR ERVL -38 477 1 652 333 143 28 chr1 50544503 50545043 -231648621 - L2 LINE L2 -710 2604 2003 609 294 208 17 chr1 50545051 50545771 -231647893 - L2 LINE L2 -2239 1075 218 627 102 31 20 chr1 50546219 50546317 -231647347 + U6 snRNA snRNA 7 105 -2 2306 93 3 16 chr1 50546338 50546649 -231647015 - AluSg SINE Alu -3 307 1 458 122 14 0 chr1 50547241 50547315 -231646349 + HsTC2 DNA Tc2 1 75 -1823 213 225 62 38 chr1 50547347 50547427 -231646237 + L2 LINE L2 3230 3311 -2 2172 125 23 0 chr1 50547574 50547879 -231645785 + AluSx SINE Alu 1 312 0 22 56 0 0 chr1 50547913 50547949 -231645715 + AT_rich Low_complexity Low_complexity 1 36 0 2179 84 0 45 chr1 50548682 50548990 -231644674 - AluSc SINE Alu -15 294 1 248 272 72 48 chr1 50549032 50549157 -231644507 + MIR SINE MIR 64 191 -71 2245 109 3 0 chr1 50549235 50549539 -231644125 + AluSp SINE Alu 1 305 -8 398 241 86 35 chr1 50549655 50549771 -231643893 + MER94 DNA DNA 2 123 -11 257 345 0 11 chr1 50550065 50550152 -231643512 - L2 LINE L2 -1 3312 3227 1818 141 10 30 chr1 50550215 50550513 -231643151 + AluJb SINE Alu 21 312 0 331 335 126 24 chr1 50550687 50551163 -231642501 - L2 LINE L2 -10 3262 2749 2080 116 10 0 chr1 50551163 50551456 -231642208 - AluSp SINE Alu -2 311 16 727 313 158 48 chr1 50551616 50552609 -231641055 - L2 LINE L2 -819 2495 1394 572 271 138 0 chr1 50552991 50553209 -231640455 - MIR SINE MIR -12 250 3 2360 26 0 0 chr1 50553366 50553662 -231640002 + L1PA3 LINE L1 5871 6166 0 370 181 202 0 chr1 50554569 50554663 -231639001 - L2 LINE L2 -1 3271 3159 185 384 9 0 chr1 50554874 50554986 -231638678 + L2 LINE L2 2632 2744 -570 230 291 86 34 chr1 50554986 50555103 -231638561 - L2 LINE L2 0 3272 3150 213 246 46 15 chr1 50555343 50555408 -231638256 - L2 LINE L2 -220 3052 2986 292 330 41 0 chr1 50555863 50555960 -231637704 + L2 LINE L2 2929 3029 -243 308 296 185 0 chr1 50556282 50556390 -231637274 + L2 LINE L2 3137 3264 -8 561 297 59 9 chr1 50556958 50557177 -231636487 - L1ME4a LINE L1 -86 6035 5806 584 303 73 21 chr1 50557816 50558146 -231635518 + L2 LINE L2 2508 2854 -460 181 216 118 0 chr1 50558195 50558246 -231635418 + L2 LINE L2 3216 3272 0 413 306 0 8 chr1 50558263 50558397 -231635267 - MER94 DNA DNA 0 134 2 208 179 0 0 chr1 50558435 50558474 -231635190 + L2 LINE L2 3179 3217 -96 228 405 0 0 chr1 50558526 50558600 -231635064 - L2 LINE L2 -56 3216 3143 2055 128 34 0 chr1 50558688 50558986 -231634678 + AluSx SINE Alu 1 308 -4 2199 78 49 0 chr1 50559354 50559638 -231634026 - AluSg SINE Alu -12 298 1 362 296 62 11 chr1 50559713 50559889 -231633775 + MIR SINE MIR 72 256 -6 27 29 0 0 chr1 50560052 50560086 -231633578 + AT_rich Low_complexity Low_complexity 1 34 0 270 180 0 0 chr1 50560475 50560536 -231633128 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 111 28 0 chr1 50560684 50560720 -231632944 + (CTG)n Simple_repeat Simple_repeat 3 39 0 21 0 0 0 chr1 50563224 50563245 -231630419 + GC_rich Low_complexity Low_complexity 1 21 0 203 200 0 0 chr1 50565182 50565217 -231628447 + A-rich Low_complexity Low_complexity 1 35 0 209 328 0 0 chr1 50567224 50567285 -231626379 + CT-rich Low_complexity Low_complexity 5 65 0 180 0 0 0 chr1 50570815 50570835 -231622829 + (CA)n Simple_repeat Simple_repeat 2 21 0 24 67 0 0 chr1 50570914 50570959 -231622705 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 50574829 50574851 -231618813 + AT_rich Low_complexity Low_complexity 1 22 0 617 261 113 17 chr1 50576006 50576244 -231617420 + MIR SINE MIR 2 262 0 658 358 21 18 chr1 50578311 50578590 -231615074 - L2 LINE L2 -1 3271 2992 312 299 0 11 chr1 50578893 50578980 -231614684 + L2 LINE L2 3185 3270 -2 202 235 59 0 chr1 50579393 50579444 -231614220 - L2 LINE L2 -10 3262 3209 344 272 29 52 chr1 50579708 50579844 -231613820 + MER5A DNA MER1_type 56 188 -1 936 217 171 0 chr1 50580696 50580913 -231612751 + MIR SINE MIR 6 259 -3 412 309 138 25 chr1 50581818 50582174 -231611490 - L2 LINE L2 -978 2336 1941 214 269 19 0 chr1 50582174 50582226 -231611438 + L2 LINE L2 3261 3313 0 1295 243 134 21 chr1 50582270 50582703 -231610961 - LTR16C LTR ERVL -3 488 7 189 359 99 0 chr1 50582717 50582848 -231610816 - L2 LINE L2 -1432 1882 1739 353 259 104 44 chr1 50583377 50583512 -231610152 + L2 LINE L2 3171 3313 0 2696 235 89 52 chr1 50583588 50584254 -231609410 + MER69 DNA AcHobo 2 705 -1821 2141 102 6 22 chr1 50584254 50584569 -231609095 - AluSx SINE Alu 0 312 3 2696 235 89 52 chr1 50584569 50584709 -231608955 + MER69 DNA AcHobo 705 838 -1688 2106 186 88 47 chr1 50584699 50585085 -231608579 + MER69 DNA AcHobo 1865 2234 -292 * 2262 94 3 0 chr1 50585085 50585393 -231608271 + AluY SINE Alu 1 309 -2 2307 88 7 0 chr1 50585393 50585701 -231607963 + AluSp SINE Alu 1 310 -3 2106 186 88 47 chr1 50585701 50585947 -231607717 + MER69 DNA AcHobo 2233 2524 -2 250 220 0 0 chr1 50586391 50586441 -231607223 + L3 LINE CR1 1174 1223 -354 267 378 10 0 chr1 50587126 50587224 -231606440 + L2 LINE L2 2591 2689 -625 452 356 31 6 chr1 50587269 50587432 -231606232 + L2 LINE L2 3106 3272 0 23 0 0 0 chr1 50587703 50587726 -231605938 + AT_rich Low_complexity Low_complexity 1 23 0 275 216 98 20 chr1 50587726 50587778 -231605886 + L1MC/D LINE L1 5372 5419 -2389 742 194 16 0 chr1 50587778 50587907 -231605757 - FLAM_A SINE Alu -2 131 1 275 216 98 20 chr1 50587907 50587956 -231605708 + L1MC/D LINE L1 5419 5481 -2327 10995 108 23 1 chr1 50587966 50589543 -231604121 - Tigger1 DNA MER2_type 0 2418 808 2361 88 0 3 chr1 50589543 50589850 -231603814 - AluSp SINE Alu -7 306 1 604 265 196 0 chr1 50590086 50590290 -231603374 + MIR SINE MIR 19 262 0 1542 164 43 43 chr1 50591513 50591818 -231601846 - AluJb SINE Alu -7 305 1 2387 67 3 0 chr1 50591939 50592238 -231601426 + AluSg SINE Alu 1 300 -10 297 256 107 50 chr1 50592323 50592444 -231601220 + MIR SINE MIR 8 135 -127 267 116 47 0 chr1 50592590 50592633 -231601031 + MIR SINE MIR 106 150 -112 2152 107 3 0 chr1 50593119 50593427 -231600237 + AluSp SINE Alu 1 309 -4 209 292 148 44 chr1 50594307 50594557 -231599107 + L2 LINE L2 2831 3106 -166 898 338 50 56 chr1 50594771 50595317 -231598347 - L2 LINE L2 -8 3264 2728 564 239 168 0 chr1 50595317 50595472 -231598192 - MER5A DNA MER1_type 0 189 9 953 296 28 8 chr1 50596046 50596293 -231597371 + MIR SINE MIR 11 262 0 240 346 0 10 chr1 50597738 50597842 -231595822 + MIR SINE MIR 35 137 -71 210 256 12 37 chr1 50598800 50598882 -231594782 + GA-rich Low_complexity Low_complexity 4 83 0 201 289 94 25 chr1 50599943 50600102 -231593562 - L2 LINE L2 -188 3084 2915 291 347 0 0 chr1 50600326 50600424 -231593240 + MIR SINE MIR 158 255 -7 2023 73 0 97 chr1 50600425 50600755 -231592909 - AluSx SINE Alu -14 298 1 183 80 0 0 chr1 50601697 50601722 -231591942 + (CATA)n Simple_repeat Simple_repeat 1 25 0 785 264 44 22 chr1 50601767 50601994 -231591670 + MIR SINE MIR 6 237 -25 834 145 23 0 chr1 50602161 50602292 -231591372 + AluJo SINE Alu 1 134 -178 1988 336 53 21 chr1 50602296 50603505 -231590159 + HERVL LTR ERVL 3390 4701 -1063 372 175 0 0 chr1 50603520 50603577 -231590087 + MER20 DNA MER1_type 4 60 -159 2100 96 7 7 chr1 50603635 50603926 -231589738 + AluSg SINE Alu 1 291 -19 2039 137 0 3 chr1 50603926 50604232 -231589432 + AluSq SINE Alu 1 305 -8 750 145 52 93 chr1 50604234 50604406 -231589258 + MER20 DNA MER1_type 55 219 0 417 298 97 0 chr1 50604407 50604531 -231589133 + HERVL LTR ERVL 4669 4804 -850 2298 100 3 0 chr1 50605146 50605457 -231588207 + AluSx SINE Alu 1 312 0 1538 257 61 20 chr1 50605519 50605928 -231587736 + LTR16A LTR ERVL 25 450 0 1899 106 19 162 chr1 50605951 50606377 -231587287 + MLT1A1 LTR MaLR 1 365 0 932 238 33 97 chr1 50606377 50606839 -231586825 - L2 LINE L2 -93 3220 2802 2234 83 7 0 chr1 50606839 50607140 -231586524 - AluSp SINE Alu -10 303 1 932 238 33 97 chr1 50607140 50607166 -231586498 - L2 LINE L2 -511 2802 2776 293 79 0 0 chr1 50607289 50607327 -231586337 - Alu SINE Alu -263 39 2 4082 114 44 2 chr1 50607328 50608056 -231585608 - Tigger1 DNA MER2_type -1602 816 1 511 215 3 1 chr1 50608056 50608154 -231585510 + L1MC4a LINE L1 5497 5592 -578 245 261 69 54 chr1 50608153 50608283 -231585381 + L1MC4a LINE L1 5827 5958 -1850 * 2013 124 0 10 chr1 50608449 50608747 -231584917 + AluSx SINE Alu 1 295 -17 276 251 116 5 chr1 50608758 50608957 -231584707 + L1M4 LINE L1 5178 5398 -748 254 323 24 73 chr1 50608996 50609160 -231584504 + L3 LINE CR1 1419 1574 -3 284 219 31 0 chr1 50609249 50609313 -231584351 - L3 LINE CR1 -5 1572 1507 189 0 0 0 chr1 50609378 50609399 -231584265 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 211 184 0 0 chr1 50609401 50609439 -231584225 - L2 LINE L2 -15 3257 3220 375 282 158 56 chr1 50609565 50609987 -231583677 - L2 LINE L2 -252 3020 2551 397 333 40 0 chr1 50610671 50610845 -231582819 + L2 LINE L2 3131 3311 -2 289 324 46 9 chr1 50610965 50611073 -231582591 - L2 LINE L2 -2 3311 3200 1326 186 0 4 chr1 50611089 50611326 -231582338 + AluJb SINE Alu 1 236 -76 870 159 0 0 chr1 50611799 50611931 -231581733 + FLAM_C SINE Alu 1 132 -1 635 188 7 51 chr1 50612010 50612148 -231581516 + FLAM_A SINE Alu 1 132 -1 1652 75 0 5 chr1 50612738 50612951 -231580713 - AluSp SINE Alu -9 304 93 205 363 117 6 chr1 50613102 50613273 -231580391 + L2 LINE L2 711 900 -2414 763 143 8 0 chr1 50613489 50613608 -231580056 + FRAM SINE Alu 43 162 -14 2173 98 0 3 chr1 50613645 50613941 -231579723 + AluSx SINE Alu 1 295 -17 3914 162 15 37 chr1 50613941 50614043 -231579621 - L1MB7 LINE L1 -61 6123 6020 2159 115 3 3 chr1 50614043 50614355 -231579309 + AluSq SINE Alu 1 312 -1 3914 162 15 37 chr1 50614355 50615043 -231578621 - L1MB7 LINE L1 -164 6020 5350 318 382 31 5 chr1 50615050 50615241 -231578423 + L2 LINE L2 2695 2890 -424 1259 211 81 12 chr1 50616496 50616593 -231577071 - MER2 DNA MER2_type 0 344 255 2230 91 0 0 chr1 50616593 50616925 -231576739 + AluSx SINE Alu 1 332 0 1856 158 0 7 chr1 50616925 50617235 -231576429 + AluJo SINE Alu 1 308 -4 1259 211 81 12 chr1 50617235 50617457 -231576207 - MER2 DNA MER2_type -88 256 1 23 33 0 0 chr1 50617753 50617783 -231575881 + AT_rich Low_complexity Low_complexity 1 30 0 2387 63 7 0 chr1 50617788 50618089 -231575575 + AluSx SINE Alu 1 303 -9 2054 115 41 0 chr1 50618231 50618526 -231575138 + AluSc SINE Alu 1 307 -2 271 214 0 14 chr1 50618528 50618598 -231575066 + L1ME3A LINE L1 5883 5951 -219 580 307 170 8 chr1 50619670 50620028 -231573636 - L2 LINE L2 0 3313 2898 2003 112 0 4 chr1 50620475 50620742 -231572922 - AluSx SINE Alu -9 303 38 2162 146 0 0 chr1 50620940 50621249 -231572415 + AluSx SINE Alu 2 310 -2 2488 64 0 3 chr1 50621617 50621915 -231571749 - AluY SINE Alu -14 297 1 1741 166 14 11 chr1 50622623 50622907 -231570757 + AluJb SINE Alu 1 285 -27 198 0 0 0 chr1 50622907 50622929 -231570735 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 724 308 107 17 chr1 50622941 50623119 -231570545 - L2 LINE L2 -1122 2192 2031 1988 112 60 0 chr1 50623119 50623416 -231570248 + AluSx SINE Alu 1 313 0 724 308 107 17 chr1 50623416 50623639 -231570025 - L2 LINE L2 -1283 2031 1754 1687 156 0 11 chr1 50623640 50623903 -231569761 + AluJo SINE Alu 1 260 -52 1683 83 4 4 chr1 50623906 50624147 -231569517 + L1PA8A LINE L1 5863 6103 -28 554 290 85 31 chr1 50624191 50624450 -231569214 - L2 LINE L2 -1548 1766 1494 509 333 111 4 chr1 50624492 50624726 -231568938 - MIR SINE MIR 0 262 4 2097 140 3 0 chr1 50625127 50625420 -231568244 - AluSx SINE Alu -18 294 1 1943 184 0 0 chr1 50625420 50625730 -231567934 - AluJo SINE Alu -2 310 1 213 336 95 17 chr1 50626003 50626119 -231567545 - L2 LINE L2 -2 3270 3146 660 248 119 5 chr1 50626697 50626907 -231566757 - MLT1J2 LTR MaLR -179 271 38 636 132 103 132 chr1 50627217 50627361 -231566303 + MER105 DNA DNA 1 139 -65 2151 106 31 0 chr1 50627361 50627653 -231566011 + AluY SINE Alu 1 301 -10 636 132 103 132 chr1 50627653 50627712 -231565952 + MER105 DNA DNA 139 198 -6 203 271 0 0 chr1 50628522 50628581 -231565083 + T-rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr1 50628922 50628951 -231564713 + AT_rich Low_complexity Low_complexity 1 29 0 1032 243 15 31 chr1 50629214 50629473 -231564191 + MIR SINE MIR 8 262 0 2214 121 0 0 chr1 50629555 50629890 -231563774 + AluSx SINE Alu 3 312 0 2145 111 14 0 chr1 50630047 50630169 -231563495 + AluSx SINE Alu 1 120 -195 447 19 0 0 chr1 50630169 50630221 -231563443 + (TAA)n Simple_repeat Simple_repeat 2 53 0 2145 111 14 0 chr1 50630221 50630409 -231563255 + AluSx SINE Alu 120 315 0 1301 132 0 66 chr1 50630471 50630634 -231563030 - AluJb SINE Alu -17 295 148 2368 75 27 3 chr1 50630634 50630927 -231562737 - AluSx SINE Alu -12 300 1 1301 132 0 66 chr1 50630927 50630976 -231562688 - AluJb SINE Alu -164 148 97 858 170 7 0 chr1 50630978 50631113 -231562551 - AluJo SINE Alu -176 136 1 384 232 203 23 chr1 50631124 50631219 -231562445 + MER112 DNA MER1_type 31 108 -152 2180 126 3 3 chr1 50631219 50631529 -231562135 - AluSx SINE Alu -2 310 1 384 232 203 23 chr1 50631529 50631610 -231562054 + MER112 DNA MER1_type 108 239 -21 267 235 0 0 chr1 50631987 50632038 -231561626 - L2 LINE L2 0 3313 3263 516 278 45 45 chr1 50632118 50632341 -231561323 - MLT1K LTR MaLR -286 302 80 2227 108 0 25 chr1 50632684 50632998 -231560666 + AluSq SINE Alu 1 306 -7 4618 206 54 23 chr1 50633002 50634161 -231559503 + L1MB8 LINE L1 2894 4097 -2049 2207 136 0 0 chr1 50634161 50634462 -231559202 - AluSx SINE Alu -11 301 1 4618 206 54 23 chr1 50634462 50634566 -231559098 + L1MB8 LINE L1 4097 4196 -1950 3817 189 23 5 chr1 50634564 50635343 -231558321 + L1MB8 LINE L1 5285 6077 -101 * 2014 128 31 22 chr1 50635364 50635420 -231558244 + MER46B DNA MER2_type 1 55 -2676 751 191 0 29 chr1 50635420 50635556 -231558108 - FLAM_A SINE Alu -1 132 1 2014 128 31 22 chr1 50635556 50635733 -231557931 + MER46B DNA MER2_type 55 117 -2614 2326 78 0 3 chr1 50635733 50636050 -231557614 + AluSg SINE Alu 1 316 0 2014 128 31 22 chr1 50636050 50636172 -231557492 + MER46B DNA MER2_type 117 236 0 808 152 8 23 chr1 50636193 50636325 -231557339 + FLAM_A SINE Alu 1 130 -3 298 163 12 50 chr1 50636332 50636412 -231557252 + L1MB8 LINE L1 6102 6178 0 2266 104 10 3 chr1 50636425 50636724 -231556940 + AluSq SINE Alu 3 303 -10 252 257 72 60 chr1 50636872 50637202 -231556462 + L1ME4a LINE L1 5648 5998 -123 2194 138 0 0 chr1 50637429 50637734 -231555930 + AluJo SINE Alu 1 305 -7 219 259 0 0 chr1 50637799 50637853 -231555811 + L2 LINE L2 3215 3268 -4 1343 103 0 0 chr1 50638067 50638232 -231555432 - AluSg SINE Alu -145 165 1 346 280 65 11 chr1 50638317 50638410 -231555254 + L2 LINE L2 3201 3298 -15 189 107 0 0 chr1 50638412 50638440 -231555224 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 354 215 92 123 chr1 50638442 50638670 -231554994 - L2 LINE L2 -461 2853 2633 431 303 79 22 chr1 50638679 50638907 -231554757 - L2 LINE L2 -922 2392 2152 207 0 0 0 chr1 50639837 50639860 -231553804 + (CA)n Simple_repeat Simple_repeat 2 24 0 307 265 108 80 chr1 50640770 50640931 -231552733 + L2 LINE L2 39 211 -3103 526 257 16 49 chr1 50640931 50641114 -231552550 - MER5B DNA MER1_type -1 177 1 307 265 108 80 chr1 50641114 50641174 -231552490 + L2 LINE L2 211 267 -3047 840 219 27 21 chr1 50641174 50641361 -231552303 - MER5A DNA MER1_type 0 189 2 * 875 253 108 29 chr1 50641361 50641649 -231552015 + L2 LINE L2 714 1026 -2288 2994 251 197 16 chr1 50641653 50643110 -231550554 + L2 LINE L2 1598 3313 0 234 0 0 0 chr1 50643540 50643566 -231550098 + (TGGGGG)n Simple_repeat Simple_repeat 6 31 0 414 0 0 0 chr1 50644547 50644593 -231549071 + (CA)n Simple_repeat Simple_repeat 2 47 0 234 0 0 0 chr1 50644627 50644653 -231549011 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 332 77 19 0 chr1 50644652 50644704 -231548960 + (CA)n Simple_repeat Simple_repeat 1 53 0 360 329 67 13 chr1 50645001 50645150 -231548514 - L2 LINE L2 -4 3268 3112 1159 164 0 34 chr1 50645242 50645484 -231548180 - AluJo SINE Alu 0 320 86 1860 122 0 0 chr1 50645549 50645787 -231547877 + AluSx SINE Alu 1 238 -74 238 93 0 0 chr1 50645888 50645931 -231547733 + Alu SINE Alu 260 302 0 825 155 63 75 chr1 50646307 50646429 -231547235 + MER5A DNA MER1_type 6 127 -62 2086 118 10 3 chr1 50646429 50646725 -231546939 - AluSc SINE Alu -11 298 1 825 155 63 75 chr1 50646725 50646776 -231546888 + MER5A DNA MER1_type 127 177 -12 623 257 42 42 chr1 50647589 50647803 -231545861 - MIR SINE MIR -35 227 14 396 243 42 106 chr1 50649275 50649464 -231544200 + MIR SINE MIR 21 197 -65 189 191 24 24 chr1 50651475 50651517 -231542147 - MIR SINE MIR -117 145 104 2491 90 0 0 chr1 50651846 50652157 -231541507 + AluY SINE Alu 1 311 0 2129 140 10 0 chr1 50652181 50652518 -231541146 + AluSx SINE Alu 1 340 0 1899 143 14 3 chr1 50652543 50652829 -231540835 + AluJo SINE Alu 19 307 -5 275 217 29 14 chr1 50652829 50652898 -231540766 + GA-rich Low_complexity Low_complexity 3 72 0 313 273 116 16 chr1 50653291 50653412 -231540252 + L2 LINE L2 3180 3312 -1 447 19 0 0 chr1 50654475 50654527 -231539137 + (TG)n Simple_repeat Simple_repeat 2 53 0 219 286 0 0 chr1 50655233 50655289 -231538375 + L3b LINE CR1 1177 1232 -351 181 163 41 0 chr1 50655969 50656018 -231537646 + CT-rich Low_complexity Low_complexity 2 52 0 204 279 0 0 chr1 50656359 50656402 -231537262 + (CGTG)n Simple_repeat Simple_repeat 4 46 0 506 290 43 0 chr1 50656697 50656835 -231536829 + L2 LINE L2 3123 3266 -6 196 296 0 0 chr1 50657363 50657417 -231536247 - L3 LINE CR1 -4 1573 1520 188 333 0 18 chr1 50658104 50658161 -231535503 - L2 LINE L2 -3 3269 3214 245 364 63 73 chr1 50658755 50659041 -231534623 - L2 LINE L2 -49 3223 2941 217 253 36 24 chr1 50659167 50659250 -231534414 + GA-rich Low_complexity Low_complexity 5 88 0 188 169 254 0 chr1 50659250 50659309 -231534355 - MIR SINE MIR -6 256 183 660 304 140 14 chr1 50659410 50659825 -231533839 + L2 LINE L2 2243 2709 -605 260 252 74 132 chr1 50659898 50660223 -231533441 + L2 LINE L2 2926 3231 -82 2198 104 7 0 chr1 50660404 50660713 -231532951 + AluSx SINE Alu 1 311 0 1850 155 3 14 chr1 50660723 50661014 -231532650 + AluJo SINE Alu 1 288 -24 2482 81 3 0 chr1 50661174 50661482 -231532182 + AluY SINE Alu 1 309 -2 316 297 0 0 chr1 50661521 50661595 -231532069 + L2 LINE L2 3240 3313 0 218 306 92 41 chr1 50661588 50661686 -231531978 - L2 LINE L2 -837 2477 2375 * 642 341 100 47 chr1 50661823 50662163 -231531501 - L2 LINE L2 0 3272 2915 329 322 48 57 chr1 50662347 50662574 -231531090 - L2 LINE L2 -431 2883 2659 450 0 0 0 chr1 50662666 50662716 -231530948 + (TG)n Simple_repeat Simple_repeat 1 50 0 249 33 0 0 chr1 50662715 50662745 -231530919 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 2277 86 0 13 chr1 50662769 50663070 -231530594 + AluY SINE Alu 1 297 -14 210 379 141 29 chr1 50663124 50663430 -231530234 + L2 LINE L2 2917 3256 -16 1692 173 4 7 chr1 50663499 50663777 -231529887 - AluJo SINE Alu -27 285 9 331 200 80 13 chr1 50663779 50663854 -231529810 + L3 LINE CR1 795 874 -703 460 371 48 28 chr1 50663860 50664151 -231529513 - L2 LINE L2 -4 3268 2972 406 258 53 107 chr1 50664207 50664451 -231529213 + L2 LINE L2 3027 3257 -15 339 25 0 0 chr1 50664453 50664493 -231529171 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 321 315 0 11 chr1 50664653 50664745 -231528919 + L3 LINE CR1 1028 1118 -459 564 304 119 5 chr1 50664805 50664999 -231528665 + MIR SINE MIR 36 251 -11 210 191 0 0 chr1 50667552 50667594 -231526070 + A-rich Low_complexity Low_complexity 3 44 0 244 229 0 49 chr1 50667946 50668007 -231525657 + L2 LINE L2 3212 3269 -3 354 330 159 48 chr1 50668131 50669844 -231523820 + L2 LINE L2 482 2383 -931 282 116 0 0 chr1 50669946 50669989 -231523675 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 643 246 0 0 chr1 50670065 50670179 -231523485 + FLAM_A SINE Alu 1 114 -19 2412 112 0 0 chr1 50670232 50670544 -231523120 + AluSx SINE Alu 1 312 0 1127 263 83 45 chr1 50670615 50670898 -231522766 + L1ME4a LINE L1 5147 5418 -703 2445 78 0 0 chr1 50670898 50671193 -231522471 - AluY SINE Alu -16 295 1 1127 263 83 45 chr1 50671193 50671208 -231522456 + L1ME4a LINE L1 5418 5431 -690 2285 124 3 0 chr1 50671208 50671506 -231522158 - AluSx SINE Alu -13 299 1 1127 263 83 45 chr1 50671506 50671914 -231521750 + L1ME4a LINE L1 5431 5881 -240 300 27 0 0 chr1 50671941 50671978 -231521686 + (CA)n Simple_repeat Simple_repeat 2 38 0 2028 128 0 14 chr1 50671980 50672270 -231521394 - AluSx SINE Alu -26 286 1 4050 101 4 63 chr1 50672270 50672385 -231521279 - Ricksha DNA DNA -121 3125 3005 2032 111 0 27 chr1 50672385 50672683 -231520981 + AluSx SINE Alu 23 312 0 4050 101 4 63 chr1 50672683 50673277 -231520387 - Ricksha DNA DNA -241 3005 2458 2135 113 7 14 chr1 50673285 50673595 -231520069 + AluSg SINE Alu 7 310 0 666 154 32 8 chr1 50673604 50673727 -231519937 - Ricksha DNA DNA -1920 126 1 325 280 65 28 chr1 50674089 50674196 -231519468 + L2 LINE L2 3186 3296 -17 777 273 168 90 chr1 50674285 50674988 -231518676 - L3 LINE CR1 -14 1563 806 315 306 54 66 chr1 50674997 50675230 -231518434 - MIR SINE MIR -8 254 16 240 346 0 0 chr1 50675288 50675369 -231518295 - MIR SINE MIR -18 244 164 2091 138 16 3 chr1 50675803 50676108 -231517556 + AluJo SINE Alu 1 309 -3 387 333 163 33 chr1 50676150 50676549 -231517115 - L2 LINE L2 -15 3257 2807 1725 182 3 17 chr1 50676577 50676874 -231516790 - AluJb SINE Alu -19 293 1 1155 65 7 7 chr1 50676883 50677073 -231516591 - L1PA4 LINE L1 0 6155 6001 2385 100 3 3 chr1 50677724 50678033 -231515631 - AluSg SINE Alu -1 309 1 264 308 67 39 chr1 50679852 50679956 -231513708 - L3 LINE CR1 -101 1476 1370 1136 311 197 18 chr1 50680120 50680883 -231512781 - L3 LINE CR1 -199 1378 480 228 331 85 72 chr1 50680857 50681228 -231512436 + L2 LINE L2 1615 1980 -1334 * 2316 112 0 0 chr1 50681228 50681533 -231512131 + AluSx SINE Alu 1 305 -7 2224 103 0 0 chr1 50681533 50681839 -231511825 + AluSx SINE Alu 1 306 0 228 331 85 72 chr1 50681839 50682017 -231511647 + L2 LINE L2 1979 2173 -1141 200 354 24 12 chr1 50682207 50682289 -231511375 - L2 LINE L2 -207 3065 2983 720 268 29 96 chr1 50683556 50683748 -231509916 - MIR SINE MIR -1 261 92 2147 148 0 0 chr1 50683748 50684046 -231509618 + AluSx SINE Alu 9 306 -6 720 268 29 96 chr1 50684046 50684133 -231509531 - MIR SINE MIR -170 92 1 265 283 126 81 chr1 50684158 50684381 -231509283 - L3 LINE CR1 -2 1575 1343 22 0 0 0 chr1 50684469 50684491 -231509173 + AT_rich Low_complexity Low_complexity 1 22 0 226 214 0 0 chr1 50686129 50686171 -231507493 + GA-rich Low_complexity Low_complexity 6 47 0 770 275 64 4 chr1 50686882 50687115 -231506549 + MIR SINE MIR 4 250 -12 469 306 0 8 chr1 50687545 50687669 -231505995 - L2 LINE L2 -1 3312 3190 302 320 145 11 chr1 50687946 50688153 -231505511 - MIR SINE MIR -16 246 6 1560 83 5 0 chr1 50688353 50688545 -231505119 - AluSp SINE Alu -13 300 108 748 304 169 21 chr1 50689803 50690483 -231503181 + L2 LINE L2 1686 2466 -848 350 384 80 19 chr1 50690492 50690977 -231502687 + L2 LINE L2 2271 2785 -529 1834 157 26 20 chr1 50691083 50691388 -231502276 - AluJo SINE Alu -5 307 1 1913 152 37 7 chr1 50691514 50691811 -231501853 + AluSg SINE Alu 1 306 -4 302 267 27 0 chr1 50691862 50691937 -231501727 + L2 LINE L2 3232 3308 -5 210 301 14 0 chr1 50693568 50693641 -231500023 + L2 LINE L2 2310 2383 -931 2339 91 27 0 chr1 50693716 50694012 -231499652 - AluSx SINE Alu -8 304 1 724 268 71 11 chr1 50694016 50694285 -231499379 - L1ME LINE L1 -392 5729 5445 1425 177 94 14 chr1 50694835 50695123 -231498541 + AluJb SINE Alu 2 312 0 699 288 77 79 chr1 50695125 50695162 -231498502 + L2 LINE L2 2736 2772 -500 2631 46 3 0 chr1 50695162 50695469 -231498195 - AluY SINE Alu -3 308 1 699 288 77 79 chr1 50695469 50695972 -231497692 + L2 LINE L2 2772 3264 -8 297 0 0 0 chr1 50695976 50696009 -231497655 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 938 274 127 17 chr1 50696405 50696759 -231496905 - LTR33 LTR ERVL -114 407 15 577 320 56 80 chr1 50697423 50697677 -231495987 + L2 LINE L2 2554 2813 -459 1900 153 3 0 chr1 50697677 50697964 -231495700 - AluJo SINE Alu -24 288 1 577 320 56 80 chr1 50697964 50698083 -231495581 + L2 LINE L2 2813 2933 -339 2448 62 0 3 chr1 50698083 50698371 -231495293 - AluY SINE Alu -24 287 1 577 320 56 80 chr1 50698371 50698630 -231495034 + L2 LINE L2 2933 3163 -109 2115 138 3 0 chr1 50698630 50698928 -231494736 - AluSx SINE Alu -11 301 3 577 320 56 80 chr1 50698928 50699036 -231494628 + L2 LINE L2 3163 3272 0 2324 68 10 3 chr1 50699162 50699455 -231494209 - AluY SINE Alu -16 295 1 232 167 0 0 chr1 50699677 50699731 -231493933 + L1MC4 LINE L1 6652 6705 -1337 322 247 117 0 chr1 50699731 50699808 -231493856 - L1MC4 LINE L1 -1342 6700 6615 742 144 23 38 chr1 50699835 50699967 -231493697 + FLAM_C SINE Alu 1 130 -3 412 149 0 23 chr1 50699975 50700062 -231493602 + (GGAA)n Simple_repeat Simple_repeat 3 87 0 234 91 0 0 chr1 50700153 50700186 -231493478 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 806 255 52 35 chr1 50701120 50701351 -231492313 - MIR SINE MIR -16 246 12 556 346 63 13 chr1 50701469 50701706 -231491958 + L2 LINE L2 3004 3252 -20 2210 114 10 0 chr1 50703161 50703460 -231490204 - AluSx SINE Alu -10 302 1 184 320 62 0 chr1 50703460 50703557 -231490107 - L2 LINE L2 -9 3304 3202 291 326 231 0 chr1 50703600 50703821 -231489843 - L2 LINE L2 0 3272 3001 2222 74 4 0 chr1 50703829 50704099 -231489565 + AluSg SINE Alu 1 271 -39 1855 175 0 0 chr1 50704233 50704519 -231489145 + AluJb SINE Alu 1 286 -26 193 265 44 15 chr1 50706091 50706159 -231487505 + L2 LINE L2 1962 2031 -1283 467 311 47 33 chr1 50706167 50706379 -231487285 + MIR SINE MIR 5 219 -43 184 378 9 18 chr1 50706491 50706602 -231487062 + L2 LINE L2 2223 2332 -982 261 303 78 35 chr1 50706647 50706789 -231486875 - L2 LINE L2 -1868 1446 1299 * 444 262 32 109 chr1 50706784 50706885 -231486779 + L2 LINE L2 2531 2638 -676 750 199 17 39 chr1 50706885 50707066 -231486598 - MER5B DNA MER1_type 0 178 2 2030 127 17 7 chr1 50707071 50707371 -231486293 + AluSx SINE Alu 1 303 -9 444 262 32 109 chr1 50707371 50707484 -231486180 + L2 LINE L2 2642 2734 -580 287 300 90 0 chr1 50707469 50707569 -231486095 + L2 LINE L2 3123 3231 -41 * 220 306 28 0 chr1 50707659 50707731 -231485933 + L2 LINE L2 3199 3272 0 201 74 0 0 chr1 50707886 50707913 -231485751 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 249 274 95 0 chr1 50710361 50710445 -231483219 - L2 LINE L2 -102 3170 3079 280 276 103 19 chr1 50710478 50710634 -231483030 + L2 LINE L2 2250 2418 -896 623 241 108 33 chr1 50710690 50710931 -231482733 + L2 LINE L2 2656 2914 -400 360 266 44 95 chr1 50710964 50711122 -231482542 + L2 LINE L2 3123 3272 0 246 302 64 74 chr1 50711291 50711493 -231482171 + MIR3 SINE MIR 6 205 -3 185 381 83 0 chr1 50713082 50713166 -231480498 - MIR SINE MIR -76 132 42 * 1041 298 160 13 chr1 50713160 50713390 -231480274 + L2 LINE L2 2472 2667 -646 2222 135 0 0 chr1 50713390 50713693 -231479971 + AluSx SINE Alu 1 303 -9 1041 298 160 13 chr1 50713693 50714191 -231479473 + L2 LINE L2 2667 3313 0 952 297 122 21 chr1 50714190 50714708 -231478956 + L2 LINE L2 2144 2713 -601 * 404 223 132 33 chr1 50714836 50714957 -231478707 + L2 LINE L2 3133 3265 -7 210 64 21 43 chr1 50715669 50715716 -231477948 + (TATAA)n Simple_repeat Simple_repeat 1 46 0 339 271 0 68 chr1 50715728 50715846 -231477818 - MIR SINE MIR 0 262 153 292 286 140 18 chr1 50716131 50716302 -231477362 - L2 LINE L2 -927 2387 2196 291 272 7 130 chr1 50716330 50716431 -231477233 + L2 LINE L2 2793 2844 -428 1730 141 45 21 chr1 50716431 50716707 -231476957 + AluJb SINE Alu 1 286 -26 471 113 0 0 chr1 50716707 50716778 -231476886 + (TGAA)n Simple_repeat Simple_repeat 3 73 0 1730 141 45 21 chr1 50716778 50716792 -231476872 + AluJb SINE Alu 286 298 -14 291 272 7 130 chr1 50716792 50716945 -231476719 + L2 LINE L2 2844 3014 -258 271 256 26 13 chr1 50717315 50717393 -231476271 + L2 LINE L2 3019 3097 -175 3723 100 54 31 chr1 50717466 50718074 -231475590 - L1MA4A LINE L1 0 6303 5682 2568 82 21 0 chr1 50718076 50718452 -231475212 + L1MA4A LINE L1 5322 5705 -598 279 333 43 17 chr1 50718487 50718604 -231475060 - L2 LINE L2 -3 3269 3150 232 229 0 0 chr1 50719451 50719499 -231474165 + (CACCT)n Simple_repeat Simple_repeat 3 50 0 270 292 0 21 chr1 50719912 50720008 -231473656 + C-rich Low_complexity Low_complexity 4 97 0 330 306 180 22 chr1 50720097 50720280 -231473384 - L2 LINE L2 0 3313 3102 1030 101 0 0 chr1 50720282 50720411 -231473253 + AluSq/x SINE Alu 3 131 -182 692 130 0 0 chr1 50720514 50720606 -231473058 - FLAM_C SINE Alu -17 126 35 2070 114 47 3 chr1 50720671 50720970 -231472694 - AluSx SINE Alu 0 312 1 547 259 44 92 chr1 50721333 50721418 -231472246 - MIR SINE MIR 0 262 174 2176 100 33 3 chr1 50721418 50721720 -231471944 + AluY SINE Alu 1 309 -2 547 259 44 92 chr1 50721720 50721860 -231471804 - MIR SINE MIR -88 174 46 1817 135 54 7 chr1 50722295 50722645 -231471019 + AluJb SINE Alu 1 364 0 327 356 0 9 chr1 50722688 50722803 -231470861 - MIR SINE MIR -129 133 20 948 343 46 3 chr1 50722864 50723211 -231470453 + L3 LINE CR1 1138 1499 -78 435 289 64 64 chr1 50724881 50725011 -231468653 - L2 LINE L2 -1191 2123 1994 2282 90 0 0 chr1 50725011 50725310 -231468354 + AluSx SINE Alu 2 300 -12 1826 80 76 4 chr1 50725311 50725562 -231468102 + AluSq SINE Alu 34 302 -11 435 289 64 64 chr1 50725562 50725678 -231467986 - L2 LINE L2 -1319 1995 1875 277 274 74 0 chr1 50725785 50725880 -231467784 - L2 LINE L2 -2 3311 3210 209 250 0 88 chr1 50726341 50726409 -231467255 + L2 LINE L2 3211 3272 0 608 252 75 9 chr1 50726483 50726713 -231466951 - MIR SINE MIR -7 255 10 2292 99 0 0 chr1 50727223 50727535 -231466129 - AluSx SINE Alu 0 312 1 283 318 24 29 chr1 50727975 50728145 -231465519 + L2 LINE L2 1802 1970 -1344 553 225 256 0 chr1 50728214 50728405 -231465259 + MIR SINE MIR 3 242 -20 185 326 34 11 chr1 50728421 50728510 -231465154 - MIR SINE MIR -102 106 16 243 342 32 21 chr1 50728656 50728846 -231464818 - L2 LINE L2 -894 2420 2229 2272 103 3 0 chr1 50729672 50729983 -231463681 - AluSx SINE Alu 0 312 1 358 265 34 48 chr1 50730250 50730397 -231463267 + MIR SINE MIR 102 246 -16 491 259 9 0 chr1 50731755 50731867 -231461797 + MIR SINE MIR 53 165 -97 2475 60 0 0 chr1 50731869 50732171 -231461493 + AluY SINE Alu 1 302 -9 197 326 76 11 chr1 50732201 50732293 -231461371 - MIR SINE MIR -63 199 102 215 286 268 24 chr1 50733405 50733476 -231460188 - L2 LINE L2 -228 3044 2992 2051 97 32 0 chr1 50733476 50733789 -231459875 - AluSq SINE Alu 0 322 1 215 286 268 24 chr1 50733789 50733884 -231459780 - L2 LINE L2 -280 2992 2836 202 286 55 33 chr1 50733948 50734039 -231459625 + MIR SINE MIR 54 146 -62 210 250 73 0 chr1 50734172 50734240 -231459424 + MIR3 SINE MIR 118 190 -18 204 286 0 0 chr1 50734643 50734699 -231458965 + GA-rich Low_complexity Low_complexity 1 56 0 273 337 17 17 chr1 50735231 50735384 -231458280 - MIR SINE MIR -62 146 3 1741 135 29 0 chr1 50735980 50736261 -231457403 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr1 50736261 50736289 -231457375 + AT_rich Low_complexity Low_complexity 1 28 0 2292 86 0 7 chr1 50736337 50736638 -231457026 + AluSx SINE Alu 1 299 -13 216 273 0 30 chr1 50736799 50736865 -231456799 + CT-rich Low_complexity Low_complexity 3 66 0 419 242 20 0 chr1 50737572 50737671 -231455993 + MER5A DNA MER1_type 9 109 -80 2357 77 0 3 chr1 50738290 50738600 -231455064 - AluY SINE Alu -2 309 1 2135 109 10 0 chr1 50738816 50739110 -231454554 + AluSq SINE Alu 1 297 -16 247 281 0 24 chr1 50739502 50739584 -231454080 + GA-rich Low_complexity Low_complexity 1 80 0 349 328 38 43 chr1 50739669 50739810 -231453854 - MIR SINE MIR -46 216 75 189 107 0 0 chr1 50739810 50739838 -231453826 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 349 328 38 43 chr1 50739838 50739882 -231453782 - MIR SINE MIR -187 75 32 387 0 0 0 chr1 50740005 50740048 -231453616 + (CA)n Simple_repeat Simple_repeat 1 43 0 216 67 0 0 chr1 50740502 50740532 -231453132 + (TC)n Simple_repeat Simple_repeat 2 31 0 190 294 98 29 chr1 50741564 50741666 -231451998 - L2 LINE L2 -6 3266 3158 386 96 0 0 chr1 50741672 50741724 -231451940 + MER66A LTR ERV1 287 338 -140 24 0 0 0 chr1 50741724 50741748 -231451916 + AT_rich Low_complexity Low_complexity 1 24 0 1538 173 60 0 chr1 50741928 50742212 -231451452 + AluJo SINE Alu 1 301 -11 563 311 147 25 chr1 50742389 50742872 -231450792 - L2 LINE L2 -557 2757 2216 356 248 135 21 chr1 50742929 50743070 -231450594 + MIR SINE MIR 2 158 -104 2235 98 0 0 chr1 50743076 50743372 -231450292 + AluSq SINE Alu 1 296 -17 422 265 125 29 chr1 50743569 50743705 -231449959 + L2 LINE L2 3124 3272 0 438 348 109 30 chr1 50743724 50744521 -231449143 - L2 LINE L2 -1405 1909 1050 2254 92 7 0 chr1 50747557 50747860 -231445804 + AluSc SINE Alu 1 305 -4 540 304 34 71 chr1 50748047 50748313 -231445351 - L2 LINE L2 -35 3237 2982 1492 294 91 63 chr1 50749038 50750020 -231443644 + L2 LINE L2 1932 2885 -387 2475 46 0 10 chr1 50750020 50750324 -231443340 - AluY SINE Alu -10 301 1 1492 294 91 63 chr1 50750324 50750461 -231443203 + L2 LINE L2 2885 3017 -255 2083 104 7 7 chr1 50750461 50750758 -231442906 - AluJo SINE Alu -15 297 1 1492 294 91 63 chr1 50750758 50750926 -231442738 + L2 LINE L2 3017 3264 -8 192 158 0 0 chr1 50750939 50750977 -231442687 + (TAGG)n Simple_repeat Simple_repeat 1 38 0 446 301 120 14 chr1 50750986 50751195 -231442469 + MIR SINE MIR 32 262 0 300 267 20 20 chr1 50751195 50751296 -231442368 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 521 240 33 0 chr1 50751497 50751618 -231442046 - MIR SINE MIR -71 191 67 202 283 0 0 chr1 50751698 50751744 -231441920 + (CA)n Simple_repeat Simple_repeat 2 47 0 233 330 78 0 chr1 50752376 50752479 -231441185 - MIR3 SINE MIR -89 119 9 263 296 37 0 chr1 50753222 50753303 -231440361 + L3 LINE CR1 1480 1563 -14 271 333 78 23 chr1 50754259 50754388 -231439276 + L2 LINE L2 3137 3272 0 257 301 60 0 chr1 50754428 50754511 -231439153 + MIR3 SINE MIR 109 196 -12 755 151 28 142 chr1 50755150 50755362 -231438302 + MER53 DNA DNA 2 189 0 822 147 21 21 chr1 50755934 50756077 -231437587 + AluJb SINE Alu 2 144 -168 1857 130 0 17 chr1 50756079 50756371 -231437293 + AluSx SINE Alu 25 311 -1 2331 218 62 15 chr1 50757334 50757915 -231435749 - MLT1G LTR MaLR -20 575 2 325 302 63 59 chr1 50758014 50758236 -231435428 - L2 LINE L2 -49 3223 3001 2363 164 108 52 chr1 50758241 50758654 -231435010 - MLT1F1 LTR MaLR -4 563 114 210 71 0 0 chr1 50758654 50758682 -231434982 + (CTATT)n Simple_repeat Simple_repeat 4 31 0 2363 164 108 52 chr1 50758682 50758787 -231434877 - MLT1F1 LTR MaLR -453 114 16 1071 225 54 12 chr1 50758804 50759044 -231434620 - MIR SINE MIR 0 262 13 23 0 0 0 chr1 50759719 50759742 -231433922 + GC_rich Low_complexity Low_complexity 1 23 0 200 222 0 0 chr1 50760184 50760229 -231433435 - MIR SINE MIR -65 143 99 398 257 14 35 chr1 50760309 50760453 -231433211 + C-rich Low_complexity Low_complexity 2 142 0 241 281 0 12 chr1 50760714 50760796 -231432868 + (CA)n Simple_repeat Simple_repeat 1 81 0 243 281 73 39 chr1 50762606 50762806 -231430858 + MIR SINE MIR 8 256 -6 2426 75 0 0 chr1 50763371 50763676 -231429988 - AluSq SINE Alu -8 305 1 1026 135 49 43 chr1 50763831 50764016 -231429648 - MER20 DNA MER1_type 0 219 34 180 179 0 0 chr1 50765062 50765101 -231428563 + (GGCTG)n Simple_repeat Simple_repeat 3 41 0 198 71 0 0 chr1 50765675 50765703 -231427961 + (TG)n Simple_repeat Simple_repeat 2 29 0 451 318 101 19 chr1 50766106 50766414 -231427250 - L2 LINE L2 -1114 2200 1868 255 211 22 56 chr1 50767079 50767169 -231426495 + GA-rich Low_complexity Low_complexity 3 89 0 267 79 0 0 chr1 50767478 50767516 -231426148 + (GA)n Simple_repeat Simple_repeat 2 39 0 2413 88 0 0 chr1 50769211 50769519 -231424145 + AluSc SINE Alu 1 308 -1 2380 78 0 0 chr1 50769519 50769825 -231423839 + AluSg SINE Alu 1 306 -4 330 268 91 101 chr1 50770243 50770441 -231423223 - MER91A DNA MER1_type 0 196 1 349 374 92 0 chr1 50771174 50771369 -231422295 + L2 LINE L2 2917 3129 -143 838 208 92 72 chr1 50771376 50771815 -231421849 - MLT1H LTR MaLR 0 595 1 876 159 0 0 chr1 50772010 50772142 -231421522 + AluSq/x SINE Alu 1 132 -181 815 146 0 0 chr1 50772556 50772679 -231420985 - FLAM_C SINE Alu -7 136 14 373 314 124 7 chr1 50772740 50772893 -231420771 - MIR SINE MIR -65 197 27 241 322 78 54 chr1 50773788 50774030 -231419634 - L2 LINE L2 -799 2515 2268 213 135 19 39 chr1 50774856 50774908 -231418756 + CT-rich Low_complexity Low_complexity 1 51 0 378 312 58 29 chr1 50775678 50775851 -231417813 - MIR SINE MIR -78 184 7 422 309 103 16 chr1 50776699 50776893 -231416771 + MIR SINE MIR 34 244 -18 204 269 108 54 chr1 50777401 50777494 -231416170 + MIR3 SINE MIR 97 194 -14 21 0 0 0 chr1 50780678 50780699 -231412965 + GC_rich Low_complexity Low_complexity 1 21 0 2282 97 0 22 chr1 50782225 50782544 -231411120 - AluSx SINE Alu 0 312 1 210 368 63 25 chr1 50785735 50785974 -231407690 - L2 LINE L2 -341 2973 2726 219 69 0 0 chr1 50788172 50788201 -231405463 + (CCTG)n Simple_repeat Simple_repeat 4 32 0 749 238 81 5 chr1 50790634 50790844 -231402820 + MIR SINE MIR 34 259 -3 220 282 0 39 chr1 50793308 50793386 -231400278 + (CATA)n Simple_repeat Simple_repeat 3 77 0 * 241 293 0 0 chr1 50793331 50793389 -231400275 + (CA)n Simple_repeat Simple_repeat 1 58 0 241 143 20 20 chr1 50795702 50795751 -231397913 - L2 LINE L2 -6 3307 3259 260 146 21 0 chr1 50796285 50796333 -231397331 + L1MA9 LINE L1 6014 6062 -250 228 234 37 75 chr1 50796320 50796427 -231397237 + L1MB1 LINE L1 6026 6128 -61 * 918 176 0 0 chr1 50796432 50796617 -231397047 + AluJb SINE Alu 134 318 0 478 300 32 50 chr1 50798576 50798796 -231394868 + MIR SINE MIR 33 248 -14 1211 121 5 34 chr1 50799137 50799186 -231394478 + AluJo SINE Alu 87 136 -176 2121 129 0 0 chr1 50799186 50799496 -231394168 + AluSg SINE Alu 1 310 0 1211 121 5 34 chr1 50799496 50799653 -231394011 + AluJo SINE Alu 136 287 -25 308 316 26 26 chr1 50799664 50799819 -231393845 + L1MC4 LINE L1 7595 7749 -293 286 224 164 20 chr1 50799848 50799983 -231393681 + L1ME4a LINE L1 5877 6039 -82 1734 167 0 11 chr1 50799983 50800291 -231393373 - AluJb SINE Alu 0 309 5 286 224 164 20 chr1 50800291 50800306 -231393358 + L1ME4a LINE L1 6039 6050 -71 380 239 97 7 chr1 50800546 50800701 -231392963 + L2 LINE L2 2029 2197 -1117 180 315 71 48 chr1 50800714 50801011 -231392653 + L2 LINE L2 2384 2692 -622 2081 122 0 3 chr1 50801011 50801306 -231392358 - AluSx SINE Alu -18 294 1 180 315 71 48 chr1 50801306 50801360 -231392304 + L2 LINE L2 2692 2743 -571 1757 75 9 0 chr1 50802310 50802538 -231391126 - AluSg/x SINE Alu -8 304 75 1777 168 62 3 chr1 50803047 50803157 -231390507 + MER58B DNA MER1_type 1 103 -2317 2033 98 37 0 chr1 50803157 50803452 -231390212 + AluY SINE Alu 1 306 -5 1777 168 62 3 chr1 50803452 50803663 -231390001 + MER58B DNA MER1_type 103 341 0 1461 150 0 39 chr1 50803695 50803955 -231389709 - AluSx SINE Alu -22 290 41 391 216 128 0 chr1 50804065 50804167 -231389497 - MIR SINE MIR -58 204 90 1063 151 0 11 chr1 50805500 50805679 -231387985 - AluJb SINE Alu -5 307 131 2040 103 7 0 chr1 50805689 50805994 -231387670 - AluSq SINE Alu 0 307 1 269 325 21 32 chr1 50806014 50806202 -231387462 + L2 LINE L2 472 657 -2657 655 265 84 37 chr1 50806295 50806350 -231387314 - MIR SINE MIR -31 231 180 1737 153 33 0 chr1 50806350 50806624 -231387040 + AluJb SINE Alu 18 300 -12 2272 86 0 3 chr1 50806624 50806924 -231386740 + AluSp SINE Alu 1 300 -13 655 265 84 37 chr1 50806924 50807082 -231386582 - MIR SINE MIR -81 181 7 610 247 23 15 chr1 50807210 50807395 -231386269 - MIR SINE MIR -36 172 9 180 326 45 38 chr1 50807388 50807520 -231386144 + L2 LINE L2 2922 3054 -218 * 232 284 11 11 chr1 50807651 50807739 -231385925 - L2 LINE L2 -677 2637 2550 2100 105 7 0 chr1 50807810 50808106 -231385558 + AluSq SINE Alu 2 299 -14 4671 161 32 28 chr1 50808167 50809296 -231384368 + L1MB7 LINE L1 4974 6115 -69 2049 136 7 0 chr1 50809296 50809597 -231384067 - AluJb SINE Alu -9 303 1 4671 161 32 28 chr1 50809597 50809668 -231383996 + L1MB7 LINE L1 6115 6184 0 382 272 103 76 chr1 50809668 50809759 -231383905 + L1ME4a LINE L1 5861 5948 -173 2230 96 13 0 chr1 50809759 50810062 -231383602 - AluSx SINE Alu -5 307 1 382 272 103 76 chr1 50810062 50810194 -231383470 + L1ME4a LINE L1 5948 6090 -31 2082 86 65 0 chr1 50810615 50810907 -231382757 + AluY SINE Alu 1 311 0 1973 147 0 3 chr1 50810997 50811297 -231382367 - AluJo SINE Alu -13 299 1 594 252 145 30 chr1 50811340 50811574 -231382090 + MIR SINE MIR 2 262 0 641 253 99 12 chr1 50811624 50811877 -231381787 - L1ME4a LINE L1 -193 5928 5654 414 269 50 14 chr1 50811975 50812116 -231381548 + MIR SINE MIR 88 233 -29 2363 80 3 0 chr1 50812252 50812552 -231381112 - AluSp SINE Alu -12 301 1 435 152 139 0 chr1 50812841 50812920 -231380744 - 5S rRNA rRNA -31 90 1 766 222 0 7 chr1 50813935 50814070 -231379594 + AluJo SINE Alu 2 135 -177 2215 103 0 0 chr1 50814101 50814393 -231379271 + AluSx SINE Alu 1 292 -20 212 274 236 0 chr1 50814683 50814789 -231378875 + L3 LINE CR1 1179 1309 -268 316 296 204 25 chr1 50814947 50815143 -231378521 + L3 LINE CR1 1332 1562 -15 436 103 26 26 chr1 50815164 50815242 -231378422 + Alu SINE Alu 224 301 -11 520 292 70 14 chr1 50815282 50815491 -231378173 - MIR SINE MIR -21 241 26 183 262 96 70 chr1 50815728 50815915 -231377749 - L2 LINE L2 -549 2765 2574 565 276 25 12 chr1 50816141 50816304 -231377360 - MIR SINE MIR -85 177 13 330 26 0 0 chr1 50817402 50817441 -231376223 + (TGGA)n Simple_repeat Simple_repeat 1 39 0 1803 141 17 20 chr1 50817834 50818133 -231375531 + AluJo SINE Alu 2 299 -13 2218 95 0 0 chr1 50818133 50818427 -231375237 + AluSx SINE Alu 1 295 -17 2862 319 150 16 chr1 50818455 50820649 -231373015 - L2 LINE L2 -663 2651 162 540 328 28 11 chr1 50822271 50822448 -231371216 - L2 LINE L2 -3 3269 3090 1971 102 33 0 chr1 50822621 50822928 -231370736 - AluSg SINE Alu 0 316 1 201 337 12 23 chr1 50823176 50823262 -231370402 - L2 LINE L2 -1850 1464 1380 280 337 174 5 chr1 50823264 50823448 -231370216 + L2 LINE L2 2454 2668 -646 2567 54 0 3 chr1 50823451 50823749 -231369915 - AluY SINE Alu -14 297 1 1031 202 5 5 chr1 50823749 50823937 -231369727 + AluJo SINE Alu 102 289 -23 378 316 99 0 chr1 50824426 50824578 -231369086 + L2 LINE L2 3106 3272 0 192 380 0 0 chr1 50824634 50824705 -231368959 - L2 LINE L2 -9 3263 3193 1089 298 156 45 chr1 50825014 50825098 -231368566 - L2 LINE L2 -541 2773 2700 2109 125 0 44 chr1 50825098 50825418 -231368246 + AluJo SINE Alu 1 306 -6 1089 298 156 45 chr1 50825418 50826173 -231367491 - L2 LINE L2 -614 2700 1841 459 312 75 23 chr1 50826140 50826313 -231367351 + MIR SINE MIR 7 188 -74 * 895 137 0 0 chr1 50826325 50826456 -231367208 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr1 50826690 50826711 -231366953 + AT_rich Low_complexity Low_complexity 1 21 0 490 329 66 84 chr1 50826796 50827461 -231366203 + HAL1 LINE L1 23 675 -1832 509 234 170 0 chr1 50827549 50827737 -231365927 + HAL1 LINE L1 1300 1519 -988 1694 161 27 34 chr1 50827767 50828065 -231365599 - AluJo SINE Alu -16 296 1 2679 62 0 0 chr1 50828072 50828380 -231365284 - AluSc SINE Alu -1 308 1 932 269 89 53 chr1 50828463 50828849 -231364815 + HAL1 LINE L1 1715 2085 -422 2164 134 0 0 chr1 50828849 50829148 -231364516 + AluSx SINE Alu 2 300 -12 932 269 89 53 chr1 50829148 50829250 -231364414 + HAL1 LINE L1 2085 2182 -325 1102 178 0 0 chr1 50829250 50829424 -231364240 + FAM SINE Alu 2 175 0 932 269 89 53 chr1 50829424 50829502 -231364162 + HAL1 LINE L1 2182 2256 -251 2520 154 3 0 chr1 50829502 50829891 -231363773 - MLT1B LTR MaLR 0 390 1 932 269 89 53 chr1 50829891 50830005 -231363659 + HAL1 LINE L1 2256 2422 -85 289 213 98 0 chr1 50830037 50830098 -231363566 - MIR SINE MIR -183 79 13 2192 104 16 7 chr1 50831508 50831817 -231361847 - AluSx SINE Alu 0 312 1 2431 90 0 0 chr1 50832394 50832694 -231360970 + AluSg SINE Alu 3 302 -8 761 311 119 75 chr1 50832792 50833128 -231360536 + L2 LINE L2 1403 1723 -1591 1873 134 87 0 chr1 50833128 50833405 -231360259 - AluSg SINE Alu -7 303 3 761 311 119 75 chr1 50833405 50833432 -231360232 + L2 LINE L2 1723 1747 -1567 2239 81 7 0 chr1 50833432 50833716 -231359948 + AluSx SINE Alu 1 286 -26 761 311 119 75 chr1 50833716 50834230 -231359434 + L2 LINE L2 1747 2320 -994 258 351 60 0 chr1 50834232 50834366 -231359298 - L2 LINE L2 -850 2464 2323 889 223 0 0 chr1 50834568 50834725 -231358939 + FRAM SINE Alu 6 162 -14 705 297 60 63 chr1 50834725 50835025 -231358639 + L2 LINE L2 2972 3270 -2 1756 161 0 34 chr1 50835182 50835497 -231358167 - AluJo SINE Alu 0 305 1 462 247 82 71 chr1 50835498 50835680 -231357984 - MER5A DNA MER1_type -5 184 1 708 155 37 91 chr1 50835851 50835898 -231357766 + MER96B DNA MER1_type? 241 289 -128 1663 176 6 42 chr1 50835898 50836210 -231357454 - AluJo SINE Alu -11 301 1 708 155 37 91 chr1 50836210 50836349 -231357315 + MER96B DNA MER1_type? 289 417 0 266 381 62 11 chr1 50836423 50836599 -231357065 + L2 LINE L2 3087 3271 -1 2474 88 0 19 chr1 50836952 50837270 -231356394 - AluSx SINE Alu 0 312 1 463 311 139 5 chr1 50837270 50837479 -231356185 - MIR SINE MIR -16 246 10 717 277 45 17 chr1 50837575 50837808 -231355856 + MIR SINE MIR 5 241 -21 748 172 8 22 chr1 50837962 50838096 -231355568 + FLAM_C SINE Alu 2 133 0 2013 151 0 17 chr1 50838117 50838416 -231355248 + AluJo SINE Alu 6 299 -13 609 199 14 85 chr1 50839823 50840034 -231353630 - MLT1K LTR MaLR -3 585 390 323 315 8 16 chr1 50840078 50840205 -231353459 - MLT1K LTR MaLR -289 299 174 2325 102 0 7 chr1 50840983 50841286 -231352378 + AluSp SINE Alu 1 301 -12 1069 96 7 0 chr1 50841320 50841455 -231352209 + AluSq/x SINE Alu 1 136 -176 2270 96 6 16 chr1 50841455 50841768 -231351896 + AluSg SINE Alu 1 310 0 412 268 58 22 chr1 50841784 50841902 -231351762 - L2 LINE L2 -21 3292 3167 2247 117 0 7 chr1 50841902 50842202 -231351462 - AluSx SINE Alu -10 302 5 412 268 58 22 chr1 50842202 50842221 -231351443 - L2 LINE L2 -146 3167 3150 2347 110 0 0 chr1 50842274 50842583 -231351081 - AluSx SINE Alu -2 310 2 316 305 63 0 chr1 50842656 50842751 -231350913 + MIR SINE MIR 108 208 -54 2261 104 0 3 chr1 50842790 50843089 -231350575 + AluSc SINE Alu 1 298 -11 2008 141 17 0 chr1 50844101 50844391 -231349273 + AluSx SINE Alu 1 295 -17 1126 139 0 29 chr1 50844394 50844567 -231349097 + AluJo SINE Alu 123 290 -22 469 276 69 57 chr1 50844615 50844861 -231348803 - MIR SINE MIR -12 250 2 2530 85 3 0 chr1 50844886 50845193 -231348471 + AluSg SINE Alu 1 308 -2 2017 115 3 21 chr1 50845895 50846181 -231347483 + AluSx SINE Alu 1 281 -31 2404 70 23 0 chr1 50846181 50846480 -231347184 - AluY SINE Alu -4 307 1 1987 163 0 0 chr1 50846972 50847266 -231346398 - AluJo SINE Alu -18 294 1 183 224 20 0 chr1 50847273 50847289 -231346375 - L2 LINE L2 -1 3312 3298 2548 67 0 3 chr1 50847289 50847589 -231346075 - AluY SINE Alu -12 299 1 183 224 20 0 chr1 50847589 50847621 -231346043 - L2 LINE L2 -15 3298 3263 * 250 192 178 0 chr1 50847590 50847663 -231346001 - MIR SINE MIR -13 249 164 2167 131 0 7 chr1 50847663 50847968 -231345696 + AluSx SINE Alu 1 303 -9 191 235 59 20 chr1 50847995 50848046 -231345618 + L2 LINE L2 3217 3269 -3 366 252 150 16 chr1 50848050 50848177 -231345487 - MIR SINE MIR -102 160 17 232 374 24 24 chr1 50848232 50848438 -231345226 - L2 LINE L2 -184 3088 2883 261 0 0 0 chr1 50849702 50849731 -231343933 + (TGAG)n Simple_repeat Simple_repeat 1 29 0 286 293 155 0 chr1 50849769 50849885 -231343779 + L2 LINE L2 3134 3267 -5 1695 185 28 0 chr1 50849889 50850176 -231343488 - AluJo SINE Alu -17 295 1 200 208 0 75 chr1 50850390 50850443 -231343221 + L2 LINE L2 3224 3272 0 323 258 0 0 chr1 50850861 50850923 -231342741 - L2 LINE L2 -5 3267 3206 182 326 87 51 chr1 50850946 50851084 -231342580 - L2 LINE L2 -2800 514 372 351 264 189 31 chr1 50851197 50851424 -231342240 + L2 LINE L2 1441 1703 -1611 233 98 49 0 chr1 50851435 50851476 -231342188 + L1MC5 LINE L1 7493 7535 -426 291 268 206 16 chr1 50851516 50851759 -231341905 + L2 LINE L2 1901 2189 -1125 348 216 159 0 chr1 50851759 50851847 -231341817 + L2 LINE L2 2308 2409 -905 2364 82 3 0 chr1 50851848 50852142 -231341522 + AluY SINE Alu 4 298 -13 1198 94 6 6 chr1 50852142 50852301 -231341363 + AluSg/x SINE Alu 134 292 -20 2733 55 0 0 chr1 50852782 50853093 -231340571 + AluY SINE Alu 1 311 0 4763 146 68 18 chr1 50853135 50854126 -231339538 - L1MB5 LINE L1 -1 6173 5129 265 302 79 0 chr1 50854143 50854206 -231339458 - L2 LINE L2 -45 3227 3160 1008 240 31 0 chr1 50854268 50854493 -231339171 - MIR SINE MIR -28 234 3 873 135 113 7 chr1 50854561 50854631 -231339033 + AluSx SINE Alu 18 79 -233 2014 122 4 0 chr1 50854631 50854910 -231338754 + AluSq SINE Alu 1 280 -33 873 135 113 7 chr1 50854910 50854980 -231338684 + AluSx SINE Alu 79 173 -139 198 0 0 0 chr1 50854990 50855012 -231338652 + (A)n Simple_repeat Simple_repeat 1 22 0 2339 118 0 0 chr1 50855109 50855413 -231338251 - AluSx SINE Alu -3 309 6 493 95 0 0 chr1 50855476 50855539 -231338125 - Alu SINE Alu -17 294 232 2148 139 7 0 chr1 50855552 50855853 -231337811 - AluSx SINE Alu -9 303 1 2400 54 30 7 chr1 50856450 50856747 -231336917 + AluY SINE Alu 1 304 -7 2511 64 3 0 chr1 50856758 50857055 -231336609 + AluSp SINE Alu 1 298 -15 1075 161 115 21 chr1 50857131 50857323 -231336341 - AluJb SINE Alu -21 291 82 775 190 43 37 chr1 50857337 50857500 -231336164 - FRAM SINE Alu -13 163 1 330 346 81 7 chr1 50857799 50857935 -231335729 + MIR3 SINE MIR 63 208 0 2304 107 0 10 chr1 50858018 50858317 -231335347 - AluSx SINE Alu -16 296 1 298 253 101 0 chr1 50858320 50858399 -231335265 + L2 LINE L2 3225 3311 -2 227 332 79 29 chr1 50858421 50858698 -231334966 + L2 LINE L2 1933 2223 -1091 494 265 133 0 chr1 50858726 50858877 -231334787 - MIR SINE MIR 0 262 92 404 329 174 21 chr1 50858867 50859247 -231334417 + L2 LINE L2 2256 2693 -621 * 396 329 99 6 chr1 50859251 50859296 -231334368 + MIR SINE MIR 2 41 -221 2340 108 0 0 chr1 50859296 50859603 -231334061 - AluSg SINE Alu -3 307 1 396 329 99 6 chr1 50859603 50859718 -231333946 + MIR SINE MIR 41 177 -85 339 304 51 76 chr1 50859854 50860170 -231333494 + L2 LINE L2 2965 3272 0 187 322 33 22 chr1 50860810 50860900 -231332764 + L3 LINE CR1 831 921 -656 2202 118 10 3 chr1 50861197 50861502 -231332162 + AluSp SINE Alu 1 307 -6 2508 81 0 7 chr1 50862367 50862675 -231330989 + AluSq SINE Alu 1 306 -7 262 310 63 103 chr1 50862900 50863200 -231330464 - L2 LINE L2 -9 3263 2976 2311 109 0 3 chr1 50863208 50863530 -231330134 + AluSx SINE Alu 1 312 0 389 306 101 25 chr1 50863635 50863962 -231329702 + L1MEd LINE L1 481 832 -5287 502 204 0 0 chr1 50864078 50864166 -231329498 + AluJb SINE Alu 178 265 -47 691 123 0 18 chr1 50864240 50864354 -231329310 - U5 snRNA snRNA -1 115 4 1023 161 5 73 chr1 50864727 50864932 -231328732 + AluJo SINE Alu 3 193 -119 1706 96 65 19 chr1 50864949 50865209 -231328455 + AluSq SINE Alu 33 304 -9 2326 58 0 55 chr1 50865234 50865543 -231328121 + AluSg SINE Alu 3 294 -16 199 250 58 0 chr1 50865762 50865814 -231327850 + L2 LINE L2 3234 3288 -25 401 278 131 0 chr1 50865953 50866129 -231327535 + MIR SINE MIR 59 257 -5 573 223 0 0 chr1 50868149 50868261 -231325403 + FLAM_A SINE Alu 9 120 -22 2262 88 3 47 chr1 50868263 50868582 -231325082 + AluSx SINE Alu 1 305 -7 920 171 17 11 chr1 50868845 50869021 -231324643 + LTR28 LTR ERV1 2 178 -842 * 1178 189 88 92 chr1 50868989 50869433 -231324231 + LTR27 LTR ERV1 188 629 -7 692 67 0 0 chr1 50869608 50869697 -231323967 - AluSc SINE Alu -3 306 218 1473 103 0 0 chr1 50869697 50869882 -231323782 - AluSg1 SINE Alu -124 185 1 1984 138 13 20 chr1 50869882 50870186 -231323478 - AluJb SINE Alu -9 303 1 1364 234 207 77 chr1 50870207 50870656 -231323008 + L2 LINE L2 2077 2466 -847 2086 160 0 3 chr1 50870656 50870968 -231322696 - AluSx SINE Alu -1 311 1 1364 234 207 77 chr1 50870968 50871204 -231322460 + L2 LINE L2 2466 2670 -643 2540 58 0 13 chr1 50871204 50871514 -231322150 + AluY SINE Alu 1 306 -5 1364 234 207 77 chr1 50871514 50871790 -231321874 + L2 LINE L2 2670 3225 -88 2401 75 3 13 chr1 50872059 50872394 -231321270 - AluSg SINE Alu 0 310 1 392 0 21 0 chr1 50872400 50872448 -231321216 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2201 71 4 21 chr1 50872452 50872733 -231320931 - AluSx SINE Alu -32 280 5 229 258 0 0 chr1 50872761 50872827 -231320837 + T-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr1 50872935 50872956 -231320708 + AT_rich Low_complexity Low_complexity 1 21 0 706 165 17 0 chr1 50872998 50873113 -231320551 + FRAM SINE Alu 39 155 -21 212 54 54 0 chr1 50873120 50873157 -231320507 + A-rich Low_complexity Low_complexity 2 40 0 1038 173 126 0 chr1 50873162 50873353 -231320311 + AluSg SINE Alu 7 221 -89 673 172 0 9 chr1 50873508 50873624 -231320040 - U5 snRNA snRNA -1 115 1 21 0 0 0 chr1 50874004 50874025 -231319639 + AT_rich Low_complexity Low_complexity 1 21 0 2336 78 10 3 chr1 50874048 50874344 -231319320 + AluSc SINE Alu 1 298 -11 505 238 65 38 chr1 50874497 50874764 -231318900 + MER39 LTR ERV1 1 471 -236 2282 72 14 3 chr1 50874766 50875056 -231318608 - AluY SINE Alu -17 294 2 2060 158 0 0 chr1 50875057 50875360 -231318304 - AluJo SINE Alu -9 303 1 1754 97 55 4 chr1 50875545 50875782 -231317882 + AluSg SINE Alu 49 297 -13 457 234 37 133 chr1 50875807 50876161 -231317503 - MLT1J LTR MaLR -88 423 104 358 233 96 114 chr1 50876270 50876489 -231317175 - L1MDb LINE L1 -5064 1345 1131 2061 108 69 14 chr1 50876493 50876781 -231316883 - AluSq SINE Alu -9 304 1 1849 156 0 4 chr1 50876841 50877116 -231316548 + AluSq SINE Alu 1 274 -39 938 114 8 0 chr1 50877121 50877252 -231316412 + AluSg/x SINE Alu 162 293 -19 2175 103 7 0 chr1 50877658 50877949 -231315715 - AluY SINE Alu -18 293 1 1905 152 14 24 chr1 50877949 50878246 -231315418 - AluSx SINE Alu -18 294 1 1855 179 0 7 chr1 50878250 50878551 -231315113 - AluJo SINE Alu -13 299 1 1160 225 92 32 chr1 50878551 50878920 -231314744 - MSTD LTR MaLR -5 391 1 2373 279 77 38 chr1 50878935 50879791 -231313873 + L2 LINE L2 1821 2725 -589 2491 91 3 0 chr1 50879791 50880099 -231313565 + AluSp SINE Alu 1 309 -4 2373 279 77 38 chr1 50880099 50880263 -231313401 + L2 LINE L2 2725 2881 -433 445 147 73 0 chr1 50880290 50880358 -231313306 + AluS SINE Alu 2 74 -235 372 161 0 0 chr1 50880364 50880426 -231313238 + AluJ/FLAM SINE Alu 1 62 -240 919 159 0 0 chr1 50930427 50930559 -231263105 - FRAM SINE Alu -52 124 1 2218 119 3 0 chr1 50930568 50930861 -231262803 - AluSx SINE Alu -18 294 1 304 282 77 8 chr1 50930874 50930991 -231262673 + L2 LINE L2 1764 1888 -1426 294 208 64 150 chr1 50931003 50931025 -231262639 + L2 LINE L2 3156 3178 -135 2269 119 0 3 chr1 50931025 50931327 -231262337 - AluSx SINE Alu -11 301 1 294 208 64 150 chr1 50931327 50931400 -231262264 + L2 LINE L2 3178 3256 -57 2118 125 0 49 chr1 50931400 50931727 -231261937 - AluSx SINE Alu -1 311 1 2344 87 10 10 chr1 50931731 50932031 -231261633 - AluSq SINE Alu -9 304 5 294 208 64 150 chr1 50932031 50932102 -231261562 + L2 LINE L2 3259 3313 0 216 178 0 22 chr1 50932662 50932707 -231260957 + G-rich Low_complexity Low_complexity 3 46 0 478 275 47 12 chr1 50934632 50934803 -231258861 - MIR SINE MIR -1 261 85 378 43 0 0 chr1 50936287 50936334 -231257330 + AluY SINE Alu 1 47 -256 1133 99 93 0 chr1 50936336 50936497 -231257167 + AluSg/x SINE Alu 125 300 -10 1734 158 0 76 chr1 50939322 50939651 -231254013 - AluJo SINE Alu -8 304 1 369 42 0 0 chr1 50939685 50939733 -231253931 - AluY SINE Alu -250 49 2 639 151 0 0 chr1 50939733 50939826 -231253838 - AluJ/FLAM SINE Alu -218 94 2 2392 83 0 10 chr1 50940012 50940312 -231253352 - AluSq SINE Alu -16 297 1 403 253 169 7 chr1 50940681 50940835 -231252829 + MIR SINE MIR 84 262 0 2068 113 50 0 chr1 50940963 50941246 -231252418 - AluJb SINE Alu -15 297 1 285 319 141 19 chr1 50941259 50941529 -231252135 + L1ME LINE L1 5347 5649 -472 259 209 191 18 chr1 50941532 50941642 -231252022 - L2 LINE L2 -521 2793 2665 711 221 40 40 chr1 50941963 50942212 -231251452 + MLT1L LTR MaLR 42 290 -325 1623 159 48 55 chr1 50942222 50942317 -231251347 + AluJo SINE Alu 4 98 -214 2188 109 10 29 chr1 50942317 50942628 -231251036 + AluSg SINE Alu 1 305 -5 1623 159 48 55 chr1 50942628 50942663 -231251001 + AluJo SINE Alu 98 132 -180 228 35 0 0 chr1 50942663 50942692 -231250972 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1623 159 48 55 chr1 50942692 50942869 -231250795 + AluJo SINE Alu 132 310 -2 571 286 107 39 chr1 50942894 50943128 -231250536 + MLT1L LTR MaLR 357 606 -9 2095 135 10 3 chr1 50943141 50943444 -231250220 - AluSx SINE Alu -7 305 1 855 159 0 35 chr1 50943444 50943589 -231250075 - FLAM_C SINE Alu -3 140 1 2334 86 0 13 chr1 50943687 50943990 -231249674 + AluY SINE Alu 2 300 -11 2075 100 4 0 chr1 50944161 50944430 -231249234 - AluSq SINE Alu -43 270 1 2163 108 22 29 chr1 50944604 50944918 -231248746 - AluSx SINE Alu 0 312 1 2076 95 46 7 chr1 50944994 50945279 -231248385 + AluSg SINE Alu 13 308 -2 1844 103 8 0 chr1 50945991 50946234 -231247430 - AluSg SINE Alu -11 299 55 2657 53 0 0 chr1 50946335 50946637 -231247027 - AluY SINE Alu -9 302 1 2104 123 7 19 chr1 50946637 50946945 -231246719 - AluSx SINE Alu -7 305 2 2223 122 0 3 chr1 50946959 50947255 -231246409 - AluSq SINE Alu -18 295 1 476 244 34 54 chr1 50947255 50947460 -231246204 - HAL1 LINE L1 -175 2332 2132 * 1043 256 80 58 chr1 50947429 50947630 -231246034 - HAL1 LINE L1 -172 2335 2140 2422 90 0 7 chr1 50947630 50947931 -231245733 + AluSx SINE Alu 1 299 -13 1043 256 80 58 chr1 50947931 50948267 -231245397 - HAL1 LINE L1 -367 2140 1786 2220 109 0 16 chr1 50948280 50948584 -231245080 - AluSc SINE Alu -10 299 1 697 119 9 0 chr1 50948593 50948702 -231244962 - AluSg/x SINE Alu -5 304 195 244 288 0 0 chr1 50948709 50948789 -231244875 - HAL1 LINE L1 -739 1768 1689 6737 118 13 11 chr1 50948804 50950453 -231243211 - L1MA2 LINE L1 0 6304 4652 1923 118 32 25 chr1 50950464 50950777 -231242887 - AluSx SINE Alu 0 315 1 1992 123 20 0 chr1 50951410 50951702 -231241962 - AluSx SINE Alu -14 298 1 198 103 0 0 chr1 50951713 50951742 -231241922 + (T)n Simple_repeat Simple_repeat 1 29 0 246 304 13 0 chr1 50952003 50952082 -231241582 + L2 LINE L2 2638 2717 -597 1970 161 3 0 chr1 50952261 50952559 -231241105 - AluJb SINE Alu -13 299 1 283 200 114 0 chr1 50952801 50952871 -231240793 + LTR33 LTR ERVL 442 519 -2 535 223 0 0 chr1 50953080 50953192 -231240472 - L1ME LINE L1 -461 5660 5549 1844 136 70 0 chr1 50953422 50953709 -231239955 + AluJo SINE Alu 6 312 0 2007 123 3 23 chr1 50954447 50954749 -231238915 - AluJb SINE Alu -16 296 1 180 116 93 23 chr1 50955023 50955066 -231238598 + MIR SINE MIR 181 226 -36 2315 95 0 3 chr1 50955389 50955683 -231237981 - AluSq SINE Alu -19 294 2 301 345 0 9 chr1 50957225 50957341 -231236323 - MIR3 SINE MIR -13 195 81 2481 78 0 0 chr1 50958927 50959222 -231234442 - AluSq SINE Alu -18 295 1 348 164 45 0 chr1 50959597 50959664 -231234000 + MIR SINE MIR 127 196 -66 2140 97 3 52 chr1 50959811 50960120 -231233544 - AluSx SINE Alu -18 294 1 2317 102 3 3 chr1 50960355 50960658 -231233006 + AluSq SINE Alu 2 304 -9 180 303 30 0 chr1 50960669 50960735 -231232929 + L2 LINE L2 3168 3235 -37 367 371 63 17 chr1 50960748 50961096 -231232568 - L2 LINE L2 -2487 827 464 1774 168 17 3 chr1 50961186 50961478 -231232186 + AluJb SINE Alu 1 296 -16 2348 103 3 0 chr1 50961852 50962152 -231231512 - AluSx SINE Alu -3 309 9 2360 97 3 3 chr1 50962447 50962745 -231230919 - AluSp SINE Alu -15 298 1 2327 115 0 0 chr1 50963418 50963714 -231229950 - AluSx SINE Alu -16 296 1 254 275 58 70 chr1 50964017 50964090 -231229574 - MIR SINE MIR -66 196 124 1956 171 0 13 chr1 50964090 50964406 -231229258 + AluSx SINE Alu 1 312 0 254 275 58 70 chr1 50964406 50964503 -231229161 - MIR SINE MIR -138 124 28 1641 178 68 0 chr1 50964658 50964939 -231228725 - AluJo SINE Alu -7 305 6 471 287 54 18 chr1 50965029 50965107 -231228557 - L1MC/D LINE L1 -468 5653 5579 2269 95 14 3 chr1 50965107 50965401 -231228263 + AluSp SINE Alu 2 298 -15 471 287 54 18 chr1 50965401 50965556 -231228108 - L1MC/D LINE L1 -542 5579 5419 1112 132 30 12 chr1 50965929 50966096 -231227568 - FRAM SINE Alu -11 165 1 2068 129 28 0 chr1 50966336 50966623 -231227041 - AluSx SINE Alu -17 295 1 626 231 16 0 chr1 50966630 50966751 -231226913 - FLAM_A SINE Alu -10 123 1 1803 174 0 7 chr1 50966875 50967162 -231226502 + AluJb SINE Alu 1 285 -27 2299 131 0 3 chr1 50967233 50967547 -231226117 + AluSq SINE Alu 1 313 0 211 271 0 0 chr1 50967551 50967599 -231226065 - MIR SINE MIR -4 258 211 1718 100 0 5 chr1 50967639 50967859 -231225805 - AluSx SINE Alu -36 276 58 564 168 197 22 chr1 50967863 50968000 -231225664 - FRAM SINE Alu -5 161 1 1160 149 0 0 chr1 50968014 50968175 -231225489 - AluJ SINE Alu -18 294 134 344 311 83 8 chr1 50968372 50968504 -231225160 - MIR SINE MIR -117 145 4 322 302 29 58 chr1 50970423 50970483 -231223181 - MIR SINE MIR -6 256 196 1892 114 103 4 chr1 50970483 50970755 -231222909 - AluSg SINE Alu -11 299 1 322 302 29 58 chr1 50970755 50970866 -231222798 - MIR SINE MIR -66 196 90 36 23 0 0 chr1 50971219 50971262 -231222402 + AT_rich Low_complexity Low_complexity 1 43 0 804 171 8 0 chr1 50971268 50971391 -231222273 - AluJ SINE Alu -187 125 2 2141 115 11 0 chr1 50972142 50972429 -231221235 + AluSx SINE Alu 2 291 -21 459 219 7 103 chr1 50972691 50972794 -231220870 - HAL1b LINE L1 -836 512 427 2374 97 7 3 chr1 50972794 50973092 -231220572 + AluSx SINE Alu 1 299 -13 459 219 7 103 chr1 50973092 50973143 -231220521 - HAL1b LINE L1 -921 427 373 1594 122 27 0 chr1 50973712 50973933 -231219731 + AluSc SINE Alu 66 292 -17 2542 84 0 0 chr1 50974292 50974603 -231219061 - AluY SINE Alu 0 311 1 2391 108 0 0 chr1 50974821 50975126 -231218538 + AluSx SINE Alu 1 305 -7 262 103 0 0 chr1 50975449 50975488 -231218176 - L1MB7 LINE L1 -50 6134 6096 232 254 60 30 chr1 50976010 50976077 -231217587 + MIR SINE MIR 86 154 -108 1975 152 0 13 chr1 50977191 50977494 -231216170 + AluJo SINE Alu 1 299 -13 213 300 50 25 chr1 50977508 50977588 -231216076 + L2 LINE L2 2973 3054 -218 690 273 82 5 chr1 50977784 50977978 -231215686 - MER63A DNA MER1_type -1 209 1 1912 248 65 26 chr1 50978027 50978411 -231215253 - HAL1 LINE L1 -30 2477 2109 1374 131 12 45 chr1 50978411 50978455 -231215209 - MER46A DNA MER2_type -2495 236 192 2351 100 0 28 chr1 50978455 50978776 -231214888 - AluSx SINE Alu 0 312 1 1374 131 12 45 chr1 50978776 50978975 -231214689 - MER46A DNA MER2_type -2539 192 1 1912 248 65 26 chr1 50978975 50979485 -231214179 - HAL1 LINE L1 -398 2109 1518 521 100 0 0 chr1 50979968 50980038 -231213626 + Alu SINE Alu 231 300 -10 5609 70 61 23 chr1 50980577 50981572 -231212092 + SVA Other Other 1 866 -571 5961 29 0 3 chr1 50981999 50982648 -231211016 + SVA Other Other 740 1386 0 2416 100 0 0 chr1 50983701 50984002 -231209662 - AluSx SINE Alu -11 301 1 1882 156 0 27 chr1 50984197 50984498 -231209166 - AluJb SINE Alu -17 295 3 372 309 165 33 chr1 50984531 50984803 -231208861 + L2 LINE L2 200 507 -2807 866 167 0 0 chr1 50985522 50985654 -231208010 - FLAM_A SINE Alu -1 132 1 355 284 98 71 chr1 50986026 50986120 -231207544 - MIR SINE MIR -74 188 98 2533 53 3 0 chr1 50986120 50986421 -231207243 + AluY SINE Alu 1 302 -9 355 284 98 71 chr1 50986421 50986509 -231207155 - MIR SINE MIR -164 98 1 263 287 11 35 chr1 50986515 50986602 -231207062 - L2 LINE L2 -4 3309 3225 200 298 309 0 chr1 50987565 50987649 -231206015 - L2 LINE L2 -16 3256 3147 894 131 29 0 chr1 50987737 50987874 -231205790 + LTR8A LTR ERV1 1 141 -586 1080 106 6 78 chr1 50987878 50988058 -231205606 - AluSg/x SINE Alu -12 298 132 2030 138 10 3 chr1 50988058 50988354 -231205310 - AluSx SINE Alu -14 298 1 2050 134 3 28 chr1 50988357 50988677 -231204987 - AluSx SINE Alu 0 312 1 2537 155 90 43 chr1 50988690 50989245 -231204419 + LTR8A LTR ERV1 147 727 0 2032 150 0 0 chr1 50989285 50989578 -231204086 - AluJo SINE Alu -19 293 1 260 318 91 11 chr1 50989578 50989747 -231203917 - L2 LINE L2 -561 2753 2568 586 259 119 72 chr1 50990773 50991192 -231202472 + L1ME4a LINE L1 5408 5806 -315 2047 92 44 44 chr1 50991192 50991485 -231202179 - AluSg SINE Alu -17 293 1 586 259 119 72 chr1 50991485 50991540 -231202124 + L1ME4a LINE L1 5806 5857 -264 2014 100 50 7 chr1 50991540 50991820 -231201844 - AluSg SINE Alu -18 292 1 586 259 119 72 chr1 50991820 50991939 -231201725 + L1ME4a LINE L1 5857 6030 -91 2867 124 11 16 chr1 50991941 50992377 -231201287 + MER57B LTR ERV1 1 434 0 6171 115 45 11 chr1 50992377 50993099 -231200565 + MER57B-int LTR ERV1 1 764 -6773 1593 114 149 20 chr1 50993099 50993354 -231200310 + AluSg1 SINE Alu 1 288 -21 6171 115 45 11 chr1 50993354 50993565 -231200099 + MER57B-int LTR ERV1 764 966 -6571 * 6219 128 56 21 chr1 50993558 50993916 -231199748 + MER41-int LTR ERV1 723 1067 -4879 243 0 0 0 chr1 50993916 50993943 -231199721 + (TC)n Simple_repeat Simple_repeat 2 28 0 6219 128 56 21 chr1 50993943 50994694 -231198970 + MER41-int LTR ERV1 1067 1975 -3971 2104 132 0 3 chr1 50994694 50994990 -231198674 + AluSx SINE Alu 1 295 -17 1470 116 35 0 chr1 50995071 50995269 -231198395 - AluSx SINE Alu -107 205 1 279 57 0 0 chr1 50995269 50995304 -231198360 + MER41-int LTR ERV1 2595 2629 -4908 * 941 116 0 0 chr1 50995300 50995429 -231198235 + MER41-int LTR ERV1 2781 2909 -4628 4331 92 58 14 chr1 50995429 50996063 -231197601 + MER41-int LTR ERV1 2405 3066 -2880 1293 179 8 17 chr1 50996063 50996298 -231197366 + LTR47B LTR ERVL 211 443 0 467 335 29 10 chr1 50996304 50996513 -231197151 + L2 LINE L2 2473 2685 -629 1645 119 15 122 chr1 50996531 50996867 -231196797 - AluJo SINE Alu -12 300 1 456 248 28 28 chr1 50996993 50997138 -231196526 + L1ME3A LINE L1 5968 6112 -58 869 167 0 0 chr1 50997347 50997479 -231196185 - FLAM_C SINE Alu -11 132 1 363 271 43 29 chr1 50997479 50997619 -231196045 - MIR SINE MIR -118 144 3 1956 124 3 23 chr1 50997738 50998037 -231195627 + AluJo SINE Alu 1 293 -19 949 152 0 51 chr1 50998493 50998671 -231194993 - AluJ SINE Alu -10 302 134 357 269 163 0 chr1 50998945 50999086 -231194578 + MIR SINE MIR 78 241 -21 191 125 25 0 chr1 51000971 51001011 -231192653 + (TA)n Simple_repeat Simple_repeat 1 41 0 689 185 21 130 chr1 51001035 51001273 -231192391 + L1MC5 LINE L1 7702 7913 -48 410 273 25 25 chr1 51001538 51001659 -231192005 + L2 LINE L2 3151 3271 -1 2136 130 10 0 chr1 51003179 51003479 -231190185 - AluSx SINE Alu -9 303 1 427 284 100 66 chr1 51003651 51003922 -231189742 + L2 LINE L2 2993 3272 0 1658 166 6 51 chr1 51004121 51004435 -231189229 - AluJo SINE Alu -12 300 1 669 206 40 0 chr1 51004437 51004563 -231189101 - AluJ SINE Alu -180 132 2 246 62 0 0 chr1 51004572 51004604 -231189060 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 676 260 0 73 chr1 51004604 51004787 -231188877 - L1MB7 LINE L1 -12 6172 6010 5186 125 29 33 chr1 51004787 51005608 -231188056 + L1PA16 LINE L1 5154 5972 -194 2047 143 3 0 chr1 51005608 51005909 -231187755 + AluSx SINE Alu 3 304 -8 5186 125 29 33 chr1 51005909 51006100 -231187564 + L1PA16 LINE L1 5972 6162 -4 676 260 0 73 chr1 51006100 51006162 -231187502 - L1MB7 LINE L1 -174 6010 5945 1012 157 52 13 chr1 51006166 51006395 -231187269 - L1MB7 LINE L1 -704 5474 5264 1371 169 70 50 chr1 51006396 51006561 -231187103 - AluJo SINE Alu -5 307 132 2352 98 0 0 chr1 51006561 51006856 -231186808 - AluSq SINE Alu -18 295 1 1371 169 70 50 chr1 51006856 51006991 -231186673 - AluJo SINE Alu -180 132 1 1915 146 7 10 chr1 51006991 51007300 -231186364 - AluJb SINE Alu -4 308 1 1793 246 15 7 chr1 51007367 51007826 -231185838 - L1MB7 LINE L1 -1112 5034 4572 653 154 0 32 chr1 51007845 51007968 -231185696 + FRAM SINE Alu 58 176 0 1885 166 0 22 chr1 51007980 51008299 -231185365 + AluJo SINE Alu 1 312 0 2169 122 6 10 chr1 51009236 51009547 -231184117 + AluSx SINE Alu 1 310 -2 2499 72 0 0 chr1 51009964 51010256 -231183408 - AluY SINE Alu -19 292 1 485 229 134 69 chr1 51010758 51010989 -231182675 + MLT2F LTR ERVL 400 645 -18 1052 170 5 5 chr1 51011098 51011286 -231182378 - MLT2C1 LTR ERVL -209 188 1 433 163 11 43 chr1 51011607 51011699 -231181965 + MLT1H LTR MaLR 65 153 -396 2317 68 7 4 chr1 51011862 51012141 -231181523 - AluSq SINE Alu -31 282 3 788 291 158 9 chr1 51012253 51012720 -231180944 + L2 LINE L2 2214 2750 -564 2244 108 0 0 chr1 51012721 51013016 -231180648 + AluSc SINE Alu 1 295 -14 789 200 21 53 chr1 51013038 51013062 -231180602 + MLT1H LTR MaLR 5 28 -521 2362 71 37 0 chr1 51013062 51013359 -231180305 + AluSp SINE Alu 1 308 -5 789 200 21 53 chr1 51013359 51013524 -231180140 + MLT1H LTR MaLR 28 188 -361 374 309 104 58 chr1 51013626 51013904 -231179760 - L2 LINE L2 -6 3266 2976 231 289 0 26 chr1 51014573 51014649 -231179015 + GA-rich Low_complexity Low_complexity 3 76 0 1153 248 21 17 chr1 51014684 51014974 -231178690 + HAL1 LINE L1 4 294 -2213 497 209 108 23 chr1 51014965 51015094 -231178570 + HAL1 LINE L1 615 754 -1753 * 409 209 87 43 chr1 51015650 51015765 -231177899 - MIR3 SINE MIR -16 192 73 920 108 0 43 chr1 51016084 51016223 -231177441 - FLAM_C SINE Alu 0 133 1 782 111 17 0 chr1 51016298 51016415 -231177249 - L1PB1 LINE L1 -3 6148 6030 208 0 62 0 chr1 51017127 51017159 -231176505 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3980 5 2 0 chr1 51017160 51017597 -231176067 - L1PA3 LINE L1 -11 6144 5707 192 357 119 0 chr1 51018386 51018512 -231175152 + MIR3 SINE MIR 62 202 -6 387 118 0 140 chr1 51018518 51018611 -231175053 - MADE1 DNA Mariner 0 80 1 256 194 32 48 chr1 51018889 51018951 -231174713 + MER58 DNA MER1_type 3 63 -161 1482 170 40 22 chr1 51018966 51019242 -231174422 - AluJo SINE Alu -31 281 1 1766 165 7 14 chr1 51019274 51019571 -231174093 - AluSq SINE Alu -18 295 1 2251 113 3 3 chr1 51019603 51019903 -231173761 - AluSq SINE Alu -13 300 1 266 71 0 24 chr1 51020101 51020143 -231173521 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 2297 87 0 3 chr1 51020143 51020430 -231173234 - AluSg SINE Alu -24 286 1 731 119 9 0 chr1 51020439 51020548 -231173116 - AluSg/x SINE Alu -5 307 198 256 288 0 0 chr1 51020555 51020635 -231173029 - HAL1 LINE L1 -739 1768 1689 1825 104 27 14 chr1 51020649 51020946 -231172718 - L1MA3 LINE L1 0 6305 6005 283 310 0 0 chr1 51021053 51021124 -231172540 - MIR SINE MIR -186 76 6 187 260 39 26 chr1 51021132 51021209 -231172455 - MIR SINE MIR -136 126 49 1770 125 106 0 chr1 51021218 51021482 -231172182 - AluJb SINE Alu -19 293 2 1150 142 0 20 chr1 51021495 51021692 -231171972 - AluSg/x SINE Alu -5 307 115 2333 110 0 0 chr1 51021692 51022002 -231171662 + AluSg SINE Alu 1 310 0 232 333 23 67 chr1 51022004 51022015 -231171649 + HAL1b LINE L1 234 244 -1104 1618 186 13 16 chr1 51022015 51022321 -231171343 + AluJb SINE Alu 1 305 -7 232 333 23 67 chr1 51022321 51022552 -231171112 + HAL1b LINE L1 244 459 -889 2386 75 14 0 chr1 51022552 51022846 -231170818 + AluSq SINE Alu 1 298 -15 232 333 23 67 chr1 51022846 51022947 -231170717 + HAL1b LINE L1 459 563 -785 1606 189 154 78 chr1 51023027 51023683 -231169981 + L1MC5 LINE L1 7205 7910 -51 2235 66 48 3 chr1 51025037 51025326 -231168338 + AluY SINE Alu 1 302 -9 502 167 26 88 chr1 51025618 51025686 -231167978 + L1MB3 LINE L1 5420 5480 -691 2304 104 3 7 chr1 51025686 51025994 -231167670 + AluSg SINE Alu 1 307 -3 502 167 26 88 chr1 51025994 51026039 -231167625 + L1MB3 LINE L1 5480 5526 -645 955 104 8 0 chr1 51026042 51026167 -231167497 + FLAM_C SINE Alu 1 126 -7 480 117 0 0 chr1 51026168 51026245 -231167419 + (CA)n Simple_repeat Simple_repeat 2 78 0 2404 90 3 0 chr1 51026258 51026558 -231167106 + AluSp SINE Alu 3 303 -10 306 0 0 0 chr1 51026559 51026593 -231167071 + (CA)n Simple_repeat Simple_repeat 2 35 0 1060 168 6 0 chr1 51026614 51026781 -231166883 - AluJb SINE Alu -23 289 122 1173 202 5 14 chr1 51026783 51027006 -231166658 + AluJb SINE Alu 92 312 0 3500 149 28 10 chr1 51027006 51027392 -231166272 + L1MB3 LINE L1 5515 5917 -266 1671 158 0 23 chr1 51027392 51027658 -231166006 + AluSx SINE Alu 42 301 -11 3500 149 28 10 chr1 51027658 51027874 -231165790 + L1MB3 LINE L1 5917 6128 -55 240 158 0 0 chr1 51028071 51028109 -231165555 + L1ME2 LINE L1 4115 4152 -1994 1734 168 10 13 chr1 51028127 51028437 -231165227 + AluJb SINE Alu 1 309 -3 953 151 12 48 chr1 51028437 51028603 -231165061 + AluJo/FRAM SINE Alu 134 293 -19 815 204 156 36 chr1 51028621 51028868 -231164796 + L1ME2 LINE L1 4163 4456 -1690 1705 153 24 20 chr1 51028868 51029162 -231164502 + AluJo SINE Alu 1 295 -17 815 204 156 36 chr1 51029162 51029222 -231164442 + L1ME2 LINE L1 4456 4507 -1639 2103 110 59 0 chr1 51029226 51029572 -231164092 - MER7A DNA MER2_type 0 346 2 230 156 67 0 chr1 51029574 51029619 -231164045 + L1ME2 LINE L1 4511 4558 -1588 1695 150 9 84 chr1 51029624 51029957 -231163707 + AluSx SINE Alu 1 308 -4 1808 212 95 6 chr1 51029958 51030949 -231162715 + L1ME2 LINE L1 5049 6155 -9 237 108 0 0 chr1 51030916 51030953 -231162711 + L1ME1 LINE L1 6126 6162 -4 * 395 269 74 0 chr1 51031271 51031379 -231162285 - L1ME2 LINE L1 -136 6028 5913 2205 117 17 0 chr1 51031404 51031695 -231161969 - AluSx SINE Alu -16 296 1 1323 181 40 4 chr1 51031893 51032141 -231161523 + AluSx SINE Alu 1 257 -55 6374 66 37 7 chr1 51032242 51033111 -231160553 + L1PA7 LINE L1 5258 6152 -2 201 147 0 0 chr1 51033235 51033269 -231160395 + (TA)n Simple_repeat Simple_repeat 1 34 0 1339 108 0 54 chr1 51033469 51033672 -231159992 - AluSq SINE Alu -121 192 1 2142 114 4 0 chr1 51033683 51033990 -231159674 - AluSx SINE Alu 0 308 1 2401 87 3 7 chr1 51033993 51034302 -231159362 - AluSq SINE Alu -5 308 1 234 154 0 0 chr1 51034317 51034356 -231159308 - Alu SINE Alu -11 291 253 1501 170 41 0 chr1 51034377 51034671 -231158993 + L1MA7 LINE L1 5984 6289 -2 2321 74 7 0 chr1 51034689 51035001 -231158663 + AluSp SINE Alu 1 314 0 523 225 8 8 chr1 51035009 51035129 -231158535 - MIR SINE MIR -134 128 9 2333 97 29 29 chr1 51035204 51035422 -231158242 + L1MA2 LINE L1 5923 6140 -164 2207 104 18 0 chr1 51035422 51035702 -231157962 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 51035702 51035724 -231157940 + (CAAAC)n Simple_repeat Simple_repeat 2 23 0 2333 97 29 29 chr1 51035724 51035886 -231157778 + L1MA2 LINE L1 6138 6304 0 1800 144 12 38 chr1 51035899 51036218 -231157446 + AluJb SINE Alu 1 311 -1 2408 75 3 0 chr1 51036232 51036526 -231157138 + AluSp SINE Alu 1 295 -18 557 270 74 21 chr1 51036670 51036859 -231156805 + MIR SINE MIR 29 227 -35 319 289 181 38 chr1 51036916 51037182 -231156482 + L1ME LINE L1 5281 5584 -537 275 287 15 46 chr1 51037194 51037389 -231156275 + L1ME LINE L1 5636 5824 -297 2204 71 4 0 chr1 51037392 51037658 -231156006 + AluSx SINE Alu 1 267 -45 22 0 0 0 chr1 51037665 51037687 -231155977 + AT_rich Low_complexity Low_complexity 1 22 0 371 291 43 35 chr1 51038077 51038218 -231155446 + L2 LINE L2 3171 3312 -1 1714 158 25 0 chr1 51038812 51039097 -231154567 - AluJb SINE Alu -16 296 5 1236 193 41 4 chr1 51039120 51039364 -231154300 + AluJo SINE Alu 16 268 -44 234 0 0 0 chr1 51039367 51039393 -231154271 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 928 92 8 0 chr1 51041168 51041288 -231152376 - AluSq/x SINE Alu -188 125 5 931 197 6 6 chr1 51041294 51041460 -231152204 - AluJb SINE Alu -11 301 133 2280 98 7 26 chr1 51041460 51041766 -231151898 - AluSq SINE Alu -13 300 1 931 197 6 6 chr1 51041766 51041782 -231151882 - AluJb SINE Alu -178 134 119 923 173 17 17 chr1 51041803 51041982 -231151682 + Charlie1 DNA MER1_type 1632 1810 -951 608 146 0 0 chr1 51042614 51042710 -231150954 + Charlie1 DNA MER1_type 1865 1960 -801 2423 81 0 3 chr1 51042713 51043021 -231150643 - AluY SINE Alu -4 307 1 3281 145 55 59 chr1 51043380 51043980 -231149684 + L1MB2 LINE L1 5507 6108 -63 2132 111 7 3 chr1 51043980 51044269 -231149395 + AluSg SINE Alu 1 290 -20 3281 145 55 59 chr1 51044269 51044283 -231149381 + L1MB2 LINE L1 6108 6121 -50 2357 88 7 10 chr1 51044283 51044578 -231149086 + AluSx SINE Alu 1 296 -16 223 57 0 29 chr1 51044578 51044613 -231149051 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 2357 88 7 10 chr1 51044613 51044624 -231149040 + AluSx SINE Alu 296 306 -6 3281 145 55 59 chr1 51044624 51044665 -231148999 + L1MB2 LINE L1 6121 6160 -11 2469 71 0 7 chr1 51045189 51045498 -231148166 + AluY SINE Alu 5 311 0 1186 118 6 29 chr1 51045499 51045669 -231147995 + AluSg/x SINE Alu 127 292 -18 1794 164 136 24 chr1 51045701 51046084 -231147580 - MSTB LTR MaLR 0 426 1 662 204 123 32 chr1 51046127 51046347 -231147317 + L1MC4 LINE L1 7672 7911 -131 1544 197 43 0 chr1 51046401 51046680 -231146984 + AluJb SINE Alu 1 291 -21 2217 95 3 10 chr1 51046682 51046976 -231146688 + AluSx SINE Alu 1 292 -20 954 197 42 5 chr1 51047397 51047610 -231146054 + MIR SINE MIR 1 221 -41 198 71 0 0 chr1 51048667 51048695 -231144969 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 407 207 69 0 chr1 51048754 51048841 -231144823 + L1M4 LINE L1 3624 3716 -2430 961 272 17 31 chr1 51048865 51049153 -231144511 + MLT1H LTR MaLR 5 331 -218 2241 109 20 0 chr1 51049160 51049454 -231144210 - AluSx SINE Alu -12 300 1 1896 224 149 10 chr1 51049503 51049986 -231143678 + MLT1E LTR MaLR 30 579 -14 462 284 17 8 chr1 51050006 51050143 -231143521 + MLT1H LTR MaLR 421 542 -7 228 231 19 0 chr1 51050144 51050196 -231143468 + L1M4 LINE L1 3766 3818 -2328 536 196 38 8 chr1 51050212 51050345 -231143319 + L1M4 LINE L1 3880 4016 -2130 1275 197 22 0 chr1 51050355 51050578 -231143086 + AluSq SINE Alu 2 229 -84 1775 123 6 41 chr1 51050696 51050785 -231142879 - L1 LINE L1 -1488 4658 4567 2392 98 0 0 chr1 51050785 51051091 -231142573 + AluSx SINE Alu 1 306 -6 1775 123 6 41 chr1 51051091 51051317 -231142347 - L1 LINE L1 -1579 4567 4354 1232 138 0 0 chr1 51051317 51051498 -231142166 - AluSg/x SINE Alu -3 309 129 1673 158 18 0 chr1 51051498 51051776 -231141888 - L1 LINE L1 -1786 4360 4078 995 240 207 15 chr1 51051762 51052158 -231141506 - HAL1 LINE L1 -801 1706 1235 * 189 107 0 0 chr1 51052244 51052272 -231141392 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 827 163 0 0 chr1 51052274 51052403 -231141261 - AluJb SINE Alu -2 310 182 2564 75 0 0 chr1 51052412 51052720 -231140944 - AluY SINE Alu -3 308 1 2068 115 48 0 chr1 51052871 51053166 -231140498 - AluSc SINE Alu 0 309 1 3275 144 55 61 chr1 51053525 51054125 -231139539 + L1MB2 LINE L1 5507 6109 -62 2132 111 7 3 chr1 51054125 51054414 -231139250 + AluSg SINE Alu 1 290 -20 3275 144 55 61 chr1 51054414 51054428 -231139236 + L1MB2 LINE L1 6109 6122 -49 2340 88 7 10 chr1 51054428 51054724 -231138940 + AluSx SINE Alu 1 297 -15 236 51 0 26 chr1 51054724 51054763 -231138901 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 3275 144 55 61 chr1 51054771 51054813 -231138851 + L1MB2 LINE L1 6122 6160 -11 2146 109 3 17 chr1 51055337 51055631 -231138033 + AluSx SINE Alu 5 294 -18 1794 164 136 24 chr1 51055663 51056046 -231137618 - MSTB LTR MaLR 0 426 1 684 206 123 27 chr1 51056089 51056308 -231137356 + L1MC4 LINE L1 7672 7911 -131 1578 190 43 0 chr1 51056362 51056641 -231137023 + AluJb SINE Alu 1 291 -21 2217 95 3 10 chr1 51056643 51056937 -231136727 + AluSx SINE Alu 1 292 -20 954 197 42 5 chr1 51057358 51057571 -231136093 + MIR SINE MIR 1 221 -41 198 71 0 0 chr1 51058628 51058656 -231135008 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 407 207 69 0 chr1 51058715 51058802 -231134862 + L1M4 LINE L1 3624 3716 -2430 961 272 17 31 chr1 51058826 51059114 -231134550 + MLT1H LTR MaLR 5 331 -218 2241 109 20 0 chr1 51059121 51059415 -231134249 - AluSx SINE Alu -12 300 1 1896 224 149 10 chr1 51059464 51059947 -231133717 + MLT1E LTR MaLR 30 579 -14 462 284 17 8 chr1 51059967 51060104 -231133560 + MLT1H LTR MaLR 421 542 -7 228 231 19 0 chr1 51060105 51060157 -231133507 + L1M4 LINE L1 3766 3818 -2328 876 226 45 65 chr1 51060160 51060316 -231133348 + L1M4 LINE L1 3859 4016 -2130 1785 169 25 0 chr1 51060316 51060594 -231133070 + AluSx SINE Alu 2 286 -26 216 0 0 0 chr1 51060597 51060621 -231133043 + (CA)n Simple_repeat Simple_repeat 2 25 0 876 226 45 65 chr1 51060621 51060770 -231132894 + L1M4 LINE L1 4018 4162 -1984 603 176 78 0 chr1 51060803 51060905 -231132759 + 5S rRNA rRNA 1 110 -11 207 0 0 0 chr1 51060907 51060930 -231132734 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 849 86 57 21 chr1 51060940 51061080 -231132584 + L1MA8 LINE L1 6007 6151 -140 1870 238 72 39 chr1 51061084 51061216 -231132448 + HAL1 LINE L1 1413 1539 -968 261 0 0 0 chr1 51061216 51061245 -231132419 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1870 238 72 39 chr1 51061245 51062127 -231131537 + HAL1 LINE L1 1539 2507 0 290 250 12 25 chr1 51062144 51062224 -231131440 + MIR SINE MIR 20 98 -164 2226 88 4 0 chr1 51062321 51062595 -231131069 + AluSp SINE Alu 1 275 -38 2063 123 0 7 chr1 51062596 51062904 -231130760 + AluSg SINE Alu 1 306 0 26 30 0 0 chr1 51062937 51062970 -231130694 + AT_rich Low_complexity Low_complexity 1 33 0 2335 99 10 13 chr1 51062970 51063284 -231130380 - AluSq SINE Alu 0 313 1 2198 114 3 7 chr1 51063982 51064281 -231129383 - AluSx SINE Alu -14 298 1 2210 100 0 37 chr1 51064778 51065078 -231128586 + AluSx SINE Alu 1 289 -23 357 276 134 43 chr1 51065292 51065524 -231128140 - MIR SINE MIR 0 262 10 489 261 39 0 chr1 51065777 51065907 -231127757 - L2 LINE L2 -7 3306 3172 2795 19 0 3 chr1 51066082 51066394 -231127270 + AluY SINE Alu 1 311 0 617 186 0 97 chr1 51066848 51066959 -231126705 + FLAM_A SINE Alu 3 123 -179 207 0 0 0 chr1 51066959 51066982 -231126682 + (TC)n Simple_repeat Simple_repeat 2 24 0 1620 161 43 18 chr1 51066983 51067263 -231126401 - AluJb SINE Alu -21 291 5 617 186 0 97 chr1 51067263 51067294 -231126370 + FLAM_A SINE Alu 122 133 -169 2029 147 0 13 chr1 51067296 51067610 -231126054 + AluJb SINE Alu 1 310 -2 296 158 49 49 chr1 51067817 51067899 -231125765 + L1MC4 LINE L1 6936 7017 -1025 1038 144 19 5 chr1 51067940 51068148 -231125516 + L1MA7 LINE L1 6081 6291 0 1159 133 6 0 chr1 51068966 51069132 -231124532 + AluSg SINE Alu 1 167 -143 2303 86 0 0 chr1 51069423 51069703 -231123961 - AluSg SINE Alu -30 280 1 253 312 43 21 chr1 51069868 51069961 -231123703 + L2 LINE L2 3173 3267 -5 218 269 0 0 chr1 51070797 51070849 -231122815 + L2 LINE L2 3262 3313 0 369 0 0 0 chr1 51070896 51070937 -231122727 + (TA)n Simple_repeat Simple_repeat 1 41 0 2142 153 0 0 chr1 51070937 51071245 -231122419 - AluJb SINE Alu -1 311 4 247 265 15 0 chr1 51071288 51071356 -231122308 - MIR SINE MIR 0 262 194 2333 67 0 7 chr1 51071356 51071677 -231121987 - AluY SINE Alu 0 319 1 39 0 0 0 chr1 51071677 51071716 -231121948 + AT_rich Low_complexity Low_complexity 1 39 0 704 125 23 94 chr1 51071716 51071844 -231121820 - FLAM_C SINE Alu -23 120 2 2095 127 0 13 chr1 51071927 51072226 -231121438 - AluJo SINE Alu -17 295 1 2106 136 7 0 chr1 51072366 51072667 -231120997 + AluSx SINE Alu 1 303 -9 516 248 0 0 chr1 51072851 51072964 -231120700 + FRAM SINE Alu 1 113 -63 245 265 27 124 chr1 51073822 51073895 -231119769 - MIR SINE MIR -6 256 177 1853 104 108 4 chr1 51073895 51074154 -231119510 - AluSg SINE Alu -24 286 1 245 265 27 124 chr1 51074154 51074265 -231119399 - MIR SINE MIR -85 177 90 37 23 0 0 chr1 51074618 51074662 -231119002 + AT_rich Low_complexity Low_complexity 1 44 0 782 171 8 0 chr1 51074668 51074791 -231118873 - FLAM_C SINE Alu -18 125 2 2109 115 11 0 chr1 51075542 51075829 -231117835 + AluSx SINE Alu 2 291 -21 482 219 7 103 chr1 51076091 51076194 -231117470 - HAL1b LINE L1 -836 512 427 2349 97 7 3 chr1 51076194 51076492 -231117172 + AluSx SINE Alu 1 299 -13 482 219 7 103 chr1 51076492 51076543 -231117121 - HAL1b LINE L1 -921 427 373 2013 106 53 3 chr1 51076842 51077126 -231116538 - AluSp SINE Alu -15 298 1 29 0 0 0 chr1 51077141 51077170 -231116494 + AT_rich Low_complexity Low_complexity 1 29 0 2095 135 0 7 chr1 51077374 51077678 -231115986 + AluSg SINE Alu 1 302 -8 2307 108 0 0 chr1 51077817 51078113 -231115551 - AluSx SINE Alu -16 296 1 1027 174 20 35 chr1 51079095 51079296 -231114368 + AluJo SINE Alu 85 282 -30 2481 71 0 0 chr1 51079375 51079683 -231113981 + AluY SINE Alu 1 308 -3 781 152 7 51 chr1 51079754 51079892 -231113772 - FLAM_C SINE Alu -1 132 1 237 316 13 13 chr1 51080149 51080225 -231113439 + MIR3 SINE MIR 125 200 -8 21 0 0 0 chr1 51080404 51080425 -231113239 + AT_rich Low_complexity Low_complexity 1 21 0 2032 126 7 0 chr1 51080453 51080747 -231112917 + AluSx SINE Alu 1 296 -16 425 198 50 0 chr1 51080747 51080848 -231112816 - MIR SINE MIR -54 208 103 1119 118 0 28 chr1 51080851 51081029 -231112635 - AluSg/x SINE Alu -9 303 131 217 254 51 34 chr1 51081047 51081106 -231112558 - MIR SINE MIR -182 80 21 1137 200 171 0 chr1 51081197 51081437 -231112227 + AluSg SINE Alu 5 285 -15 279 0 0 0 chr1 51081437 51081468 -231112196 + (GA)n Simple_repeat Simple_repeat 2 32 0 268 287 126 24 chr1 51081505 51081672 -231111992 + L2 LINE L2 2243 2426 -888 404 302 114 90 chr1 51081672 51081915 -231111749 + L2 LINE L2 1983 2219 -1095 1885 115 14 17 chr1 51081915 51082210 -231111454 - AluSg SINE Alu -16 294 1 404 302 114 90 chr1 51082210 51082811 -231110853 + L2 LINE L2 2219 2847 -467 566 283 196 11 chr1 51082832 51083097 -231110567 - L2 LINE L2 0 3313 3000 821 195 92 0 chr1 51083137 51083301 -231110363 - AluSg/x SINE Alu -9 303 125 1551 206 0 0 chr1 51083310 51083596 -231110068 - AluJb SINE Alu -26 286 1 1411 137 160 11 chr1 51083739 51084002 -231109662 + AluJb SINE Alu 1 302 0 1208 178 7 84 chr1 51084122 51084409 -231109255 + AluJb SINE Alu 33 297 -15 1920 129 0 7 chr1 51084417 51084696 -231108968 + AluSx SINE Alu 1 277 -35 1985 95 0 49 chr1 51084918 51085222 -231108442 + AluSc SINE Alu 1 289 -20 231 291 47 12 chr1 51085305 51085391 -231108273 + L2 LINE L2 3148 3236 -36 275 343 34 82 chr1 51086145 51086352 -231107312 - L2 LINE L2 -95 3177 2981 1881 147 0 22 chr1 51086389 51086708 -231106956 + AluJb SINE Alu 1 312 0 2039 94 11 0 chr1 51087042 51087328 -231106336 - AluSq SINE Alu -20 293 5 1567 161 13 45 chr1 51087334 51087500 -231106164 - AluJb SINE Alu -11 301 148 2174 102 0 23 chr1 51087500 51087805 -231105859 - AluSp SINE Alu -15 298 1 1567 161 13 45 chr1 51087805 51087949 -231105715 - AluJb SINE Alu -164 148 1 1875 107 0 61 chr1 51088325 51088454 -231105210 + AluSx SINE Alu 1 136 -176 2035 104 21 3 chr1 51088454 51088743 -231104921 - AluSq SINE Alu -19 294 1 1875 107 0 61 chr1 51088743 51088940 -231104724 + AluSx SINE Alu 136 307 -5 1654 125 106 0 chr1 51088953 51089217 -231104447 + AluJb SINE Alu 2 293 -19 225 260 40 25 chr1 51089217 51089304 -231104360 + MIR SINE MIR 39 128 -80 880 267 9 14 chr1 51089312 51089529 -231104135 + MIR SINE MIR 8 223 -39 2783 7 0 0 chr1 51089533 51089841 -231103823 - AluYb8 SINE Alu -10 308 1 185 375 69 14 chr1 51089928 51090072 -231103592 + L2 LINE L2 2909 3060 -212 1040 104 0 13 chr1 51090861 51091015 -231102649 - AluSg/x SINE Alu 0 310 159 194 301 0 41 chr1 51091019 51091092 -231102572 + MIR3 SINE MIR 120 189 -19 228 35 0 0 chr1 51091735 51091764 -231101900 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2416 27 0 13 chr1 51091766 51092066 -231101598 - AluY SINE Alu -15 296 1 1627 140 25 14 chr1 51092126 51092404 -231101260 + AluJo SINE Alu 1 281 -31 2011 79 3 120 chr1 51092539 51092881 -231100783 + AluSx SINE Alu 1 302 0 1576 190 14 0 chr1 51093538 51093833 -231099831 + AluJb SINE Alu 1 299 -3 332 219 14 0 chr1 51093853 51093926 -231099738 + MLT1H1 LTR MaLR 482 555 0 2002 104 17 0 chr1 51094003 51094292 -231099372 - AluSc SINE Alu -15 294 1 664 198 8 0 chr1 51094396 51094517 -231099147 - FLAM_A SINE Alu -9 133 12 308 167 39 90 chr1 51094529 51094607 -231099057 - L2 LINE L2 -9 3304 3231 2986 188 178 16 chr1 51095002 51095123 -231098541 - Charlie1a DNA MER1_type -1306 1455 1355 2218 83 3 3 chr1 51095123 51095413 -231098251 - AluSp SINE Alu -23 290 1 2986 188 178 16 chr1 51095413 51095973 -231097691 - Charlie1a DNA MER1_type -1406 1355 632 2307 81 0 3 chr1 51095973 51096281 -231097383 + AluY SINE Alu 1 307 -4 2986 188 178 16 chr1 51096281 51096370 -231097294 - Charlie1a DNA MER1_type -2129 632 559 2174 163 9 144 chr1 51097002 51097219 -231096445 - Charlie1a DNA MER1_type -2257 504 259 2340 95 0 0 chr1 51097219 51097523 -231096141 + AluSg SINE Alu 1 304 -6 2174 163 9 144 chr1 51097523 51097610 -231096054 - Charlie1a DNA MER1_type -2502 259 162 2309 76 3 25 chr1 51097610 51097927 -231095737 - AluY SINE Alu -1 310 1 2022 115 17 0 chr1 51097929 51098217 -231095447 - AluSx SINE Alu -19 293 1 797 203 52 0 chr1 51098219 51098372 -231095292 - FRAM SINE Alu -5 161 1 2174 163 9 144 chr1 51098372 51098643 -231095021 - Charlie1a DNA MER1_type -2601 160 1 370 309 122 0 chr1 51098705 51098844 -231094820 + L2 LINE L2 3113 3268 -4 201 121 0 0 chr1 51099098 51099131 -231094533 + (TG)n Simple_repeat Simple_repeat 2 34 0 1764 149 0 14 chr1 51099413 51099701 -231093963 - AluJb SINE Alu -28 284 1 830 238 0 11 chr1 51100005 51100186 -231093478 + AluJb SINE Alu 131 309 -3 1646 177 59 3 chr1 51100201 51100523 -231093141 + L1MA7 LINE L1 5598 5937 -354 1610 176 4 0 chr1 51100527 51100806 -231092858 + AluJb SINE Alu 1 280 -32 1936 115 3 30 chr1 51100849 51101154 -231092510 - AluSx SINE Alu -14 298 2 309 299 42 69 chr1 51101179 51101323 -231092341 + MIR3 SINE MIR 3 142 -66 302 346 54 8 chr1 51101338 51101468 -231092196 - L2 LINE L2 -6 3307 3172 1071 153 25 44 chr1 51101469 51101672 -231091992 - AluJo SINE Alu -113 199 1 347 135 0 0 chr1 51101675 51101727 -231091937 - L1MC4a LINE L1 -1927 5881 5830 1440 135 90 11 chr1 51101728 51101995 -231091669 - AluJo SINE Alu -9 303 16 28 29 0 0 chr1 51102049 51102084 -231091580 + AT_rich Low_complexity Low_complexity 1 35 0 1190 214 49 55 chr1 51102204 51102407 -231091257 + MER2 DNA MER2_type 1 203 -141 2210 76 3 7 chr1 51102407 51102708 -231090956 - AluSg SINE Alu -10 300 1 1190 214 49 55 chr1 51102708 51102850 -231090814 + MER2 DNA MER2_type 203 344 0 21 36 0 0 chr1 51102993 51103021 -231090643 + AT_rich Low_complexity Low_complexity 1 28 0 884 174 0 23 chr1 51103516 51103688 -231089976 - AluJo SINE Alu -23 289 122 1245 191 146 85 chr1 51104981 51105288 -231088376 - L1MC4a LINE L1 -2025 5783 5435 2004 126 0 0 chr1 51105288 51105573 -231088091 - AluSx SINE Alu -13 299 15 1245 191 146 85 chr1 51105573 51105746 -231087918 - L1MC4a LINE L1 -2373 5435 5274 401 263 45 28 chr1 51105764 51105802 -231087862 - L1MC4a LINE L1 -942 5204 5168 1624 173 7 17 chr1 51105802 51106103 -231087561 - AluJb SINE Alu -14 298 1 401 263 45 28 chr1 51106103 51106377 -231087287 - L1MC4a LINE L1 -978 5168 4882 201 147 0 0 chr1 51106428 51106462 -231087202 + (TA)n Simple_repeat Simple_repeat 1 34 0 6859 46 16 1 chr1 51106586 51107998 -231085666 - L1PA7 LINE L1 -2 6152 4708 6353 85 27 1 chr1 51107998 51108881 -231084783 + L1PA7 LINE L1 3787 4692 -1454 248 290 90 0 chr1 51108942 51109097 -231084567 - L1MC4a LINE L1 -3689 2457 2289 517 283 105 19 chr1 51109253 51109283 -231084381 - L2 LINE L2 -1337 1977 1951 1763 141 0 52 chr1 51109283 51109589 -231084075 - AluJb SINE Alu -21 291 2 517 283 105 19 chr1 51109589 51109816 -231083848 - L2 LINE L2 -1363 1951 1698 217 256 44 33 chr1 51109957 51110047 -231083617 - L2 LINE L2 -1611 1703 1613 304 256 80 40 chr1 51110054 51110179 -231083485 - L2 LINE L2 -2 3311 3182 * 1825 276 82 37 chr1 51110167 51110234 -231083430 - L2 LINE L2 -1728 1586 1523 2453 41 7 0 chr1 51110234 51110528 -231083136 + AluY SINE Alu 1 296 -15 1825 276 82 37 chr1 51110528 51110685 -231082979 - L2 LINE L2 -1791 1523 1374 2128 100 0 17 chr1 51110685 51110822 -231082842 + AluSx SINE Alu 1 139 -173 2736 13 0 3 chr1 51110822 51111133 -231082531 + AluYa5 SINE Alu 1 310 -1 2128 100 0 17 chr1 51111133 51111296 -231082368 + AluSx SINE Alu 139 296 -16 1825 276 82 37 chr1 51111296 51111769 -231081895 - L2 LINE L2 -1940 1374 857 417 219 105 9 chr1 51111759 51111873 -231081791 + L2 LINE L2 3189 3313 0 * 355 291 0 8 chr1 51111870 51112004 -231081660 - L2 LINE L2 -2449 865 733 * 1950 154 0 3 chr1 51112100 51112405 -231081259 + AluSx SINE Alu 1 304 -8 261 267 122 28 chr1 51112459 51112639 -231081025 - HAL1 LINE L1 -7 2500 2304 1805 172 7 3 chr1 51112640 51112948 -231080716 - AluJo SINE Alu -3 309 1 210 306 185 9 chr1 51113619 51113727 -231079937 - L2 LINE L2 -13 3259 3133 1727 135 0 47 chr1 51113919 51114244 -231079420 + AluSx SINE Alu 1 311 0 24 0 0 0 chr1 51114524 51114548 -231079116 + AT_rich Low_complexity Low_complexity 1 24 0 836 130 0 30 chr1 51115083 51115199 -231078465 + FLAM_C SINE Alu 2 115 -197 240 35 0 0 chr1 51115199 51115228 -231078436 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 836 130 0 30 chr1 51115228 51115242 -231078422 + FLAM_C SINE Alu 115 128 -184 1616 145 6 85 chr1 51116331 51116649 -231077015 + AluJo SINE Alu 1 293 -19 2321 68 0 0 chr1 51117524 51117818 -231075846 - AluY SINE Alu -15 296 3 1311 170 3 113 chr1 51118253 51118582 -231075082 - AluJo SINE Alu -19 293 1 871 203 0 0 chr1 51118582 51118745 -231074919 - FRAM SINE Alu -13 163 1 1973 139 7 0 chr1 51118929 51119230 -231074434 - AluSx SINE Alu -9 303 1 1974 127 0 13 chr1 51119369 51119668 -231073996 + AluJo SINE Alu 1 295 -17 1415 135 9 132 chr1 51119750 51119918 -231073746 + AluSx SINE Alu 1 109 -203 2279 73 0 7 chr1 51119918 51120218 -231073446 + AluY SINE Alu 1 298 -13 1415 135 9 132 chr1 51120218 51120382 -231073282 + AluSx SINE Alu 109 292 -20 35 41 0 0 chr1 51120518 51120567 -231073097 + AT_rich Low_complexity Low_complexity 1 49 0 2078 113 3 7 chr1 51120610 51120912 -231072752 - AluSx SINE Alu -11 301 1 354 264 119 15 chr1 51120912 51121113 -231072551 + HAL1 LINE L1 2114 2335 -172 * 632 246 38 111 chr1 51121082 51121292 -231072372 + HAL1 LINE L1 2132 2356 -151 2068 113 0 3 chr1 51121292 51121583 -231072081 + AluSq SINE Alu 6 295 -18 632 246 38 111 chr1 51121583 51121597 -231072067 + HAL1 LINE L1 2356 2369 -138 1935 124 7 20 chr1 51121597 51121903 -231071761 + AluSx SINE Alu 2 303 -9 2506 50 0 0 chr1 51121903 51122204 -231071460 + AluY SINE Alu 1 301 -10 632 246 38 111 chr1 51122204 51122372 -231071292 + HAL1 LINE L1 2367 2497 -10 707 209 84 145 chr1 51122399 51122441 -231071223 + HAL1b LINE L1 210 253 -1095 2061 118 3 3 chr1 51122441 51122747 -231070917 - AluSp SINE Alu -6 307 2 707 209 84 145 chr1 51122747 51123124 -231070540 + HAL1b LINE L1 253 602 -746 1693 155 40 7 chr1 51123124 51123421 -231070243 - AluJb SINE Alu -5 307 1 707 209 84 145 chr1 51123421 51123454 -231070210 + HAL1b LINE L1 602 635 -713 235 337 0 21 chr1 51126943 51127038 -231066626 + L2 LINE L2 2568 2660 -654 22 0 0 0 chr1 51129688 51129710 -231063954 + AT_rich Low_complexity Low_complexity 1 22 0 196 277 92 35 chr1 51130488 51130629 -231063035 + L2 LINE L2 3165 3313 0 232 315 14 28 chr1 51132629 51132772 -231060892 + (CATA)n Simple_repeat Simple_repeat 4 144 0 250 320 21 0 chr1 51132893 51132990 -231060674 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 1941 64 4 0 chr1 51136439 51136673 -231056991 - AluY SINE Alu -18 293 59 2360 94 3 7 chr1 51137135 51137444 -231056220 + AluSq SINE Alu 1 308 -5 2204 100 7 3 chr1 51137447 51137736 -231055928 + AluSq SINE Alu 1 290 -23 606 192 42 0 chr1 51137737 51137857 -231055807 + Charlie1 DNA MER1_type 2637 2761 0 278 147 40 93 chr1 51138255 51138330 -231055334 + L2 LINE L2 3234 3304 -9 648 207 8 0 chr1 51138342 51138463 -231055201 + FLAM_A SINE Alu 12 133 -9 2003 114 18 0 chr1 51138567 51138847 -231054817 + AluSc SINE Alu 1 285 -24 1558 167 15 7 chr1 51139044 51139313 -231054351 - AluJb SINE Alu -41 271 1 2521 70 0 0 chr1 51140472 51140772 -231052892 - AluY SINE Alu -11 300 1 650 113 284 0 chr1 51140935 51141076 -231052588 - L1MC2 LINE L1 0 6344 6164 1165 188 148 30 chr1 51141080 51141383 -231052281 + MER2 DNA MER2_type 7 345 0 4304 173 36 98 chr1 51141392 51142520 -231051144 - L1MC2 LINE L1 -135 6603 5407 2357 93 0 6 chr1 51142520 51142833 -231050831 - AluSx SINE Alu -1 311 1 4304 173 36 98 chr1 51142833 51142996 -231050668 - L1MC2 LINE L1 -1331 5407 5236 2340 103 0 0 chr1 51142996 51143296 -231050368 - AluSx SINE Alu -12 300 1 4304 173 36 98 chr1 51143296 51144133 -231049531 - L1MC2 LINE L1 -1502 5236 4349 253 250 0 0 chr1 51144133 51144185 -231049479 + Tigger5 DNA MER2_type 4 55 -2268 * 368 164 27 14 chr1 51144154 51144227 -231049437 + Tigger5 DNA MER2_type 2250 2323 0 * 4304 173 36 98 chr1 51144227 51144391 -231049273 - L1MC2 LINE L1 -2430 4308 4409 1670 175 7 7 chr1 51144407 51144676 -231048988 - AluJo SINE Alu -43 269 1 3204 219 36 46 chr1 51144678 51145693 -231047971 - L1MC2 LINE L1 -2119 4421 3417 39 0 0 0 chr1 51145710 51145749 -231047915 + AT_rich Low_complexity Low_complexity 1 39 0 2057 117 25 0 chr1 51145749 51146032 -231047632 - AluSx SINE Alu -22 290 1 931 185 13 0 chr1 51146034 51146185 -231047479 - AluJb SINE Alu -24 288 136 2274 114 3 0 chr1 51146186 51146492 -231047172 - AluSx SINE Alu -5 307 1 991 185 0 15 chr1 51146494 51146694 -231046970 - L1M4 LINE L1 -944 5202 5006 352 157 114 0 chr1 51146700 51146770 -231046894 - L1MC2 LINE L1 -3999 2722 2645 2099 139 3 0 chr1 51146823 51147126 -231046538 + AluSx SINE Alu 9 312 0 841 156 0 8 chr1 51147142 51147270 -231046394 + FLAM_C SINE Alu 1 127 -16 1094 211 81 13 chr1 51147273 51147995 -231045669 - L1MD3 LINE L1 -1 7994 7201 1569 122 101 7 chr1 51147998 51148276 -231045388 - L1MB4 LINE L1 -239 5941 5638 1644 158 45 0 chr1 51148309 51148574 -231045090 - AluJo SINE Alu -24 288 12 2216 96 4 0 chr1 51148607 51148888 -231044776 - AluSx SINE Alu -30 282 1 740 274 12 8 chr1 51148893 51149134 -231044530 - L1M4 LINE L1 -2696 3450 3209 314 153 15 0 chr1 51149260 51149321 -231044343 - Alu SINE Alu -255 45 4 758 216 121 41 chr1 51149321 51149379 -231044285 - L1M4 LINE L1 -3019 3127 3075 2308 92 0 7 chr1 51149379 51149682 -231043982 + AluY SINE Alu 1 301 -10 758 216 121 41 chr1 51149682 51149938 -231043726 - L1M4 LINE L1 -3071 3075 2788 1829 167 0 14 chr1 51149958 51150252 -231043412 - AluJo SINE Alu -22 290 1 551 258 43 47 chr1 51150256 51150305 -231043359 - L1MC2 LINE L1 -4620 1920 1872 2235 115 3 3 chr1 51150305 51150609 -231043055 - AluSx SINE Alu -8 304 1 551 258 43 47 chr1 51150609 51150858 -231042806 - L1MC2 LINE L1 -4668 1872 1623 414 223 83 31 chr1 51150944 51151137 -231042527 - L1MC/D LINE L1 -2322 5486 5284 21 0 0 0 chr1 51151208 51151229 -231042435 + AT_rich Low_complexity Low_complexity 1 21 0 269 248 19 57 chr1 51151476 51151581 -231042083 - MIR SINE MIR -65 197 97 2387 46 35 0 chr1 51151690 51151974 -231041690 - AluY SINE Alu -17 294 1 2078 134 0 20 chr1 51152604 51152910 -231040754 - AluJb SINE Alu -12 300 1 2238 124 0 0 chr1 51154170 51154477 -231039187 - AluSx SINE Alu -5 307 1 1930 161 0 23 chr1 51154613 51154923 -231038741 - AluJb SINE Alu -9 303 1 2427 89 0 0 chr1 51154931 51155233 -231038431 - AluSx SINE Alu -10 302 1 331 360 40 0 chr1 51155727 51155852 -231037812 - L2 LINE L2 -2 3270 3141 1813 147 39 7 chr1 51156427 51156712 -231036952 - AluJb SINE Alu -12 300 7 1058 156 0 108 chr1 51157148 51157217 -231036447 - AluJo SINE Alu -123 189 114 2049 138 3 0 chr1 51157217 51157506 -231036158 - AluSx SINE Alu -21 291 2 207 0 0 0 chr1 51157508 51157531 -231036133 + (TTTAA)n Simple_repeat Simple_repeat 4 26 0 2385 72 3 3 chr1 51157536 51157827 -231035837 - AluSp SINE Alu -22 291 1 1058 156 0 108 chr1 51157827 51157960 -231035704 - AluJo SINE Alu -203 109 1 220 277 69 54 chr1 51158000 51158130 -231035534 - MIR SINE MIR -75 187 56 247 328 35 43 chr1 51158693 51158809 -231034855 - L2 LINE L2 -2 3311 3197 2272 105 0 3 chr1 51159364 51159660 -231034004 - AluSx SINE Alu -17 295 1 1058 259 78 56 chr1 51159662 51160229 -231033435 - L1ME4a LINE L1 -184 5937 5359 248 212 45 30 chr1 51161313 51161379 -231032285 - L2 LINE L2 -607 2707 2641 1919 157 0 20 chr1 51161734 51162040 -231031624 + AluJo SINE Alu 11 310 -2 1760 171 3 26 chr1 51162128 51162264 -231031400 + AluJb SINE Alu 1 139 -173 2603 52 0 3 chr1 51162264 51162569 -231031095 + AluY SINE Alu 1 304 -7 762 48 0 0 chr1 51162569 51162672 -231030992 + (TA)n Simple_repeat Simple_repeat 2 104 0 1760 171 3 26 chr1 51162672 51162844 -231030820 + AluJb SINE Alu 137 303 -9 6237 244 64 76 chr1 51163525 51164457 -231029207 - L2 LINE L2 0 3313 2372 261 0 0 0 chr1 51164457 51164486 -231029178 + (TG)n Simple_repeat Simple_repeat 2 30 0 6237 244 64 76 chr1 51164486 51164566 -231029098 - L2 LINE L2 -941 2372 2293 2202 104 30 0 chr1 51164566 51164865 -231028799 + AluSq SINE Alu 1 308 -5 6237 244 64 76 chr1 51164865 51165905 -231027759 - L2 LINE L2 -1020 2293 1243 1214 180 172 12 chr1 51165905 51166161 -231027503 - AluSc SINE Alu -1 298 2 6237 244 64 76 chr1 51166161 51166667 -231026997 - L2 LINE L2 -2070 1243 698 1839 146 0 39 chr1 51166667 51166976 -231026688 + AluJb SINE Alu 7 303 -9 6237 244 64 76 chr1 51166976 51167309 -231026355 - L2 LINE L2 -2615 698 363 1945 120 19 0 chr1 51167359 51167625 -231026039 + AluSx SINE Alu 1 271 -41 2172 112 0 10 chr1 51167895 51168198 -231025466 + AluSx SINE Alu 2 301 -11 389 198 228 0 chr1 51169342 51169443 -231024221 - L2 LINE L2 -12 3260 3137 411 262 0 0 chr1 51169616 51169723 -231023941 + MIR SINE MIR 129 235 -27 1973 111 0 80 chr1 51169824 51170148 -231023516 - AluSq SINE Alu -15 298 1 1768 152 52 10 chr1 51170310 51170599 -231023065 + AluJb SINE Alu 1 301 -11 2323 104 0 3 chr1 51170666 51170974 -231022690 + AluSp SINE Alu 5 311 -2 2203 132 0 3 chr1 51171302 51171606 -231022058 + AluSx SINE Alu 1 303 -9 1486 209 27 0 chr1 51171823 51172119 -231021545 + AluJo SINE Alu 1 304 -8 2180 113 3 3 chr1 51172122 51172423 -231021241 + AluSx SINE Alu 1 301 -11 35 41 0 0 chr1 51172466 51172515 -231021149 + AT_rich Low_complexity Low_complexity 1 49 0 1590 253 40 149 chr1 51172611 51172651 -231021013 - L2 LINE L2 -825 2489 2446 2095 113 0 30 chr1 51172651 51172815 -231020849 - AluSx SINE Alu -20 292 140 2429 77 3 0 chr1 51172815 51173112 -231020552 - AluY SINE Alu -13 298 1 2095 113 0 30 chr1 51173112 51173248 -231020416 - AluSx SINE Alu -172 140 1 1590 253 40 149 chr1 51173248 51173680 -231019984 - L2 LINE L2 -868 2446 1969 805 134 0 0 chr1 51173680 51173792 -231019872 + FLAM_C SINE Alu 12 123 -20 1590 253 40 149 chr1 51173792 51174138 -231019526 - L2 LINE L2 -1345 1969 1723 2184 94 0 58 chr1 51174138 51174446 -231019218 + AluSx SINE Alu 6 295 -17 1590 253 40 149 chr1 51174446 51174750 -231018914 - L2 LINE L2 -1591 1723 1388 1164 124 68 0 chr1 51174929 51175106 -231018558 + MER5A DNA MER1_type 1 189 0 4041 135 25 45 chr1 51176764 51177521 -231016143 + L1MB8 LINE L1 5433 6174 -4 23 33 0 0 chr1 51178212 51178242 -231015422 + AT_rich Low_complexity Low_complexity 1 30 0 1718 148 7 25 chr1 51178496 51178779 -231014885 - AluJb SINE Alu -14 298 21 29 0 0 0 chr1 51178858 51178887 -231014777 + AT_rich Low_complexity Low_complexity 1 29 0 408 168 0 168 chr1 51179143 51179193 -231014471 - L1MA7 LINE L1 -23 6268 6211 2258 116 0 0 chr1 51179193 51179487 -231014177 - AluSx SINE Alu -14 298 5 408 168 0 168 chr1 51179487 51179603 -231014061 - L1MA7 LINE L1 -80 6211 6130 1133 107 0 0 chr1 51179706 51179855 -231013809 + AluSg/x SINE Alu 157 305 -7 1341 142 9 0 chr1 51179855 51180081 -231013583 - L1 LINE L1 -1565 4581 4354 1245 133 0 0 chr1 51180081 51180261 -231013403 - AluSg/x SINE Alu -4 306 127 1673 158 18 0 chr1 51180261 51180539 -231013125 - L1 LINE L1 -1786 4360 4078 952 251 199 13 chr1 51180525 51180923 -231012741 - HAL1 LINE L1 -801 1706 1235 * 189 107 0 0 chr1 51181009 51181037 -231012627 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 827 163 0 0 chr1 51181039 51181168 -231012496 - AluJb SINE Alu -2 310 182 2562 75 0 0 chr1 51181177 51181485 -231012179 - AluY SINE Alu -3 308 1 1574 251 35 152 chr1 51181513 51181918 -231011746 - L2 LINE L2 -896 2418 1967 805 134 0 0 chr1 51181918 51182030 -231011634 + FLAM_C SINE Alu 12 123 -20 1574 251 35 152 chr1 51182030 51182376 -231011288 - L2 LINE L2 -1347 1967 1726 2184 94 0 58 chr1 51182376 51182684 -231010980 + AluSx SINE Alu 6 295 -17 1574 251 35 152 chr1 51182684 51182988 -231010676 - L2 LINE L2 -1588 1726 1388 1164 124 68 0 chr1 51183167 51183344 -231010320 + MER5A DNA MER1_type 1 189 0 654 127 19 89 chr1 51185107 51185203 -231008461 - L1MA7 LINE L1 -97 6194 6112 2003 156 3 0 chr1 51185203 51185498 -231008166 + AluSx SINE Alu 1 296 -16 654 127 19 89 chr1 51185498 51185558 -231008106 - L1MA7 LINE L1 -179 6112 6049 215 385 11 0 chr1 51185558 51185649 -231008015 - L3 LINE CR1 -964 613 522 1860 152 10 20 chr1 51185896 51186198 -231007466 - AluJo SINE Alu -13 299 1 3691 128 32 4 chr1 51186216 51186779 -231006885 - L1PA16 LINE L1 -9 6157 5579 224 316 82 35 chr1 51186780 51186951 -231006713 + L2 LINE L2 2703 2881 -433 2335 70 35 0 chr1 51187110 51187395 -231006269 + AluY SINE Alu 6 300 -11 197 245 19 0 chr1 51187779 51187832 -231005832 + L2 LINE L2 3219 3272 0 518 211 70 0 chr1 51187998 51188112 -231005552 + L2 LINE L2 3188 3309 -4 266 282 173 0 chr1 51188119 51188275 -231005389 - MIR SINE MIR -77 185 3 202 379 0 29 chr1 51188461 51188564 -231005100 - MER5A DNA MER1_type 0 189 90 2976 39 0 3 chr1 51189259 51189617 -231004047 - L1PA4 LINE L1 -3 6152 5796 471 289 233 32 chr1 51189667 51189920 -231003744 - L2 LINE L2 -1 3271 2968 622 344 89 32 chr1 51190071 51190551 -231003113 - L2 LINE L2 -497 2817 2238 2054 156 0 6 chr1 51190551 51190865 -231002799 + AluJo SINE Alu 1 312 0 622 344 89 32 chr1 51190865 51191005 -231002659 - L2 LINE L2 -1076 2238 2107 2360 105 0 10 chr1 51191487 51191801 -231001863 - AluSx SINE Alu -1 311 1 584 93 0 0 chr1 51191829 51191904 -231001760 + AluSp/q SINE Alu 221 295 -18 533 306 78 0 chr1 51191931 51192150 -231001514 - L1M4 LINE L1 -1045 5101 4866 1918 135 12 35 chr1 51192188 51192507 -231001157 - AluJo SINE Alu 0 312 1 412 220 69 96 chr1 51192512 51192540 -231001124 - HAL1 LINE L1 -1165 1342 1315 2489 73 0 0 chr1 51192540 51192840 -231000824 + AluY SINE Alu 1 300 -11 412 220 69 96 chr1 51192840 51193029 -231000635 - HAL1 LINE L1 -1192 1315 1131 623 203 86 17 chr1 51193856 51194088 -230999576 - HAL1 LINE L1 -1381 1126 879 216 305 63 21 chr1 51194229 51194324 -230999340 - L2 LINE L2 -5 3308 3210 22599 142 24 12 chr1 51194376 51194850 -230998814 - L1MA2 LINE L1 0 7723 7256 2091 146 0 10 chr1 51194850 51195159 -230998505 - AluJb SINE Alu -6 306 1 22599 142 24 12 chr1 51195159 51196650 -230997014 - L1MA2 LINE L1 -467 7256 5784 2248 111 7 3 chr1 51196650 51196956 -230996708 - AluSq SINE Alu -6 307 1 22599 142 24 12 chr1 51196956 51200634 -230993030 - L1MA2 LINE L1 -1939 5784 2151 9242 39 2 1 chr1 51200634 51201704 -230991960 - MER11C LTR ERVK 0 1071 1 22599 142 24 12 chr1 51201704 51202300 -230991364 - L1MA2 LINE L1 -5572 2151 1563 3257 86 4 9 chr1 51202300 51202752 -230990912 + LTR7 LTR ERV1 1 450 0 22599 142 24 12 chr1 51202752 51204128 -230989536 - L1MA2 LINE L1 -6160 1563 13 252 0 0 0 chr1 51204636 51204664 -230989000 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 5630 38 2 16 chr1 51204664 51205741 -230987923 + SVA Other Other 1 1386 0 1640 189 36 7 chr1 51206645 51206947 -230986717 - AluJo SINE Alu -1 311 1 2169 98 161 29 chr1 51207094 51207300 -230986364 - MSTA LTR MaLR 0 428 251 1708 199 3 0 chr1 51207300 51207607 -230986057 - AluJb SINE Alu -4 308 1 2169 98 161 29 chr1 51207607 51207778 -230985886 - MSTA LTR MaLR -177 251 1 8618 156 64 20 chr1 51207778 51209359 -230984305 - MSTA-int LTR MaLR 0 1651 1 2018 147 124 18 chr1 51209359 51209746 -230983918 - MSTA LTR MaLR 0 428 1 2051 72 4 0 chr1 51209928 51210192 -230983472 + L1PA6 LINE L1 5890 6154 0 2345 116 0 0 chr1 51210279 51210581 -230983083 - AluSx SINE Alu -10 302 1 291 271 165 23 chr1 51210651 51210784 -230982880 + L2 LINE L2 3162 3313 0 1283 171 3 77 chr1 51212381 51212679 -230980985 - AluJb SINE Alu -36 276 1 556 254 138 0 chr1 51212814 51213003 -230980661 - MIR SINE MIR -11 251 37 890 183 6 18 chr1 51213093 51213262 -230980402 + AluJo SINE Alu 7 173 -139 1463 147 6 121 chr1 51213866 51214020 -230979644 + AluJo SINE Alu 2 97 -205 260 51 0 26 chr1 51214020 51214059 -230979605 + (TAAAA)n Simple_repeat Simple_repeat 1 38 0 1463 147 6 121 chr1 51214059 51214244 -230979420 + AluJo SINE Alu 97 302 0 1756 153 4 21 chr1 51214782 51215063 -230978601 + AluJo SINE Alu 11 286 -26 275 65 22 0 chr1 51215066 51215112 -230978552 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 190 196 18 36 chr1 51215274 51215330 -230978334 + L2 LINE L2 3192 3246 -67 300 296 11 0 chr1 51215377 51215465 -230978199 + MIR3 SINE MIR 115 203 -5 303 222 14 0 chr1 51215572 51215644 -230978020 - MIR SINE MIR -14 248 176 1989 116 0 31 chr1 51215677 51216001 -230977663 - AluSg SINE Alu 0 315 1 1904 176 56 21 chr1 51216002 51216338 -230977326 + MLT2C1 LTR ERVL 4 356 -41 225 0 0 0 chr1 51216338 51216363 -230977301 + (TCTA)n Simple_repeat Simple_repeat 3 27 0 1904 176 56 21 chr1 51216363 51216401 -230977263 + MLT2C1 LTR ERVL 356 391 -6 686 248 0 13 chr1 51216401 51216558 -230977106 - MIR SINE MIR -106 156 2 1375 161 0 68 chr1 51217245 51217412 -230976252 - AluJb SINE Alu -15 297 120 465 34 0 0 chr1 51217412 51217471 -230976193 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2151 117 0 0 chr1 51217471 51217752 -230975912 - AluSc SINE Alu -28 281 1 1375 161 0 68 chr1 51217752 51217832 -230975832 - AluJb SINE Alu -190 122 66 588 132 11 0 chr1 51217860 51217951 -230975713 + AluJ/FLAM SINE Alu 2 93 -219 1568 154 57 50 chr1 51217978 51218277 -230975387 + AluJb SINE Alu 1 301 -11 744 186 183 64 chr1 51218280 51218529 -230975135 - L1MC5 LINE L1 -72 7889 7582 1925 163 7 0 chr1 51218529 51218823 -230974841 - AluJb SINE Alu -16 296 1 744 186 183 64 chr1 51218823 51218933 -230974731 - L1MC5 LINE L1 -379 7582 7487 268 318 59 29 chr1 51218975 51219145 -230974519 - L1MC4a LINE L1 -393 7415 7241 249 249 0 0 chr1 51219139 51219217 -230974447 - L1MC4 LINE L1 -728 7233 7180 * 271 264 25 37 chr1 51219415 51219578 -230974086 + (CACCC)n Simple_repeat Simple_repeat 5 165 0 4420 143 56 23 chr1 51219731 51221244 -230972420 + SVA Other Other 107 868 -535 243 88 0 0 chr1 51221586 51221620 -230972044 + (CA)n Simple_repeat Simple_repeat 2 35 0 359 71 0 18 chr1 51221740 51221796 -230971868 + (TG)n Simple_repeat Simple_repeat 2 56 0 351 0 0 0 chr1 51221849 51221888 -230971776 + (CA)n Simple_repeat Simple_repeat 2 40 0 180 224 121 0 chr1 51222626 51222684 -230970980 + L2 LINE L2 2969 3033 -239 245 204 41 0 chr1 51222829 51222878 -230970786 - MIR SINE MIR -64 144 94 1243 121 0 0 chr1 51223012 51223178 -230970486 - AluSg/x SINE Alu -12 298 133 204 213 0 0 chr1 51223395 51223442 -230970222 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 269 353 105 19 chr1 51223565 51223823 -230969841 + L2 LINE L2 2450 2729 -585 22116 52 6 0 chr1 51223832 51227363 -230966301 + L1PA6 LINE L1 2612 6154 0 427 340 104 64 chr1 51227501 51227951 -230965713 + L2 LINE L2 2805 3272 0 198 0 0 0 chr1 51228163 51228185 -230965479 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1604 166 7 42 chr1 51228194 51228483 -230965181 - AluJb SINE Alu -33 279 1 913 274 4 38 chr1 51228566 51228829 -230964835 - MIR SINE MIR -6 256 3 5818 111 57 20 chr1 51230329 51232536 -230961128 + SVA Other Other 107 1383 -3 2344 71 0 23 chr1 51232667 51232976 -230960688 + AluY SINE Alu 1 302 -9 1857 164 3 29 chr1 51233093 51233405 -230960259 - AluJo SINE Alu -2 310 7 230 250 16 0 chr1 51233961 51234025 -230959639 + MIR SINE MIR 194 258 -4 1976 107 10 13 chr1 51234776 51235074 -230958590 + AluSg SINE Alu 1 297 -13 1812 177 3 10 chr1 51235181 51235480 -230958184 - AluJb SINE Alu -15 297 1 388 298 136 58 chr1 51236257 51236515 -230957149 - L2 LINE L2 0 3272 2995 2385 192 22 31 chr1 51236750 51237260 -230956404 - MLT1D LTR MaLR 0 505 1 189 340 0 0 chr1 51237261 51237311 -230956353 + MIR SINE MIR 15 64 -198 593 218 7 7 chr1 51237313 51237460 -230956204 - L1MA10 LINE L1 0 6334 6188 388 192 160 26 chr1 51237465 51237621 -230956043 - L1ME2 LINE L1 -144 6020 5844 479 174 7 116 chr1 51237621 51237776 -230955888 + MIR SINE MIR 67 204 -58 183 232 107 0 chr1 51238354 51238410 -230955254 + MIR SINE MIR 201 262 0 461 336 61 67 chr1 51238522 51238685 -230954979 - L2 LINE L2 -400 2914 2752 849 169 0 0 chr1 51238685 51238815 -230954849 - FLAM_A SINE Alu -3 130 1 461 336 61 67 chr1 51238815 51238993 -230954671 - L2 LINE L2 -562 2752 2575 414 278 119 36 chr1 51239019 51239271 -230954393 + L2 LINE L2 2222 2494 -820 941 216 31 8 chr1 51239628 51239887 -230953777 + L1M4 LINE L1 2317 2581 -3565 182 261 11 91 chr1 51239900 51239956 -230953708 - L3 LINE CR1 -294 1283 1235 7371 80 43 125 chr1 51239956 51241453 -230952211 - SVA Other Other -1 1385 11 182 261 11 91 chr1 51241453 51241484 -230952180 - L3 LINE CR1 -342 1235 1203 1769 178 14 0 chr1 51242705 51242991 -230950673 + AluJb SINE Alu 1 290 -22 552 153 24 48 chr1 51243302 51243426 -230950238 + AluSg/x SINE Alu 170 290 -19 1864 143 20 3 chr1 51243776 51244077 -230949587 + AluJb SINE Alu 5 310 -2 806 304 63 13 chr1 51244110 51244413 -230949251 - L2 LINE L2 -6 3307 2990 188 238 0 125 chr1 51244423 51244503 -230949161 - L2 LINE L2 -559 2755 2686 226 279 47 58 chr1 51245008 51245094 -230948570 + L2 LINE L2 3148 3232 -40 1815 132 30 0 chr1 51245373 51245638 -230948026 + AluSx SINE Alu 1 273 -39 1641 151 0 48 chr1 51245792 51246084 -230947580 - AluJo SINE Alu -34 278 1 2356 73 3 7 chr1 51246257 51246559 -230947105 - AluY SINE Alu -10 301 1 241 294 137 0 chr1 51246766 51246868 -230946796 + L2 LINE L2 2272 2387 -927 1825 168 47 0 chr1 51246899 51247197 -230946467 - AluJo SINE Alu 0 312 1 929 262 46 4 chr1 51247458 51247695 -230945969 + MIR SINE MIR 1 247 -15 6976 191 113 84 chr1 51247739 51250818 -230942846 + L1MD1 LINE L1 26 3015 -3525 1962 92 48 4 chr1 51250818 51251089 -230942575 + AluSq SINE Alu 18 300 -13 1811 161 3 55 chr1 51251093 51251422 -230942242 + AluJo SINE Alu 1 312 0 6976 191 113 84 chr1 51251422 51251930 -230941734 + L1MD1 LINE L1 3017 3509 -3031 775 173 0 8 chr1 51251930 51252063 -230941601 + FLAM_C SINE Alu 2 133 0 6976 191 113 84 chr1 51252063 51252165 -230941499 + L1MD1 LINE L1 3509 3607 -2933 827 206 0 0 chr1 51252165 51252311 -230941353 - FRAM SINE Alu -30 146 1 6976 191 113 84 chr1 51252311 51252751 -230940913 + L1MD1 LINE L1 3607 4033 -2507 1488 141 57 53 chr1 51252751 51253034 -230940630 - AluJo SINE Alu -15 297 14 6976 191 113 84 chr1 51253034 51253566 -230940098 + L1MD1 LINE L1 4033 4548 -1992 1481 129 12 33 chr1 51253566 51253807 -230939857 - AluJo SINE Alu -76 236 1 6976 191 113 84 chr1 51253807 51253933 -230939731 + L1MD1 LINE L1 4548 5254 -1286 1848 160 27 42 chr1 51253941 51254348 -230939316 - L1MC2 LINE L1 -192 6152 5752 664 217 17 78 chr1 51254342 51254463 -230939201 - L1MC2 LINE L1 -1586 4560 4433 * 2449 73 10 0 chr1 51254463 51254765 -230938899 - AluY SINE Alu -6 305 1 664 217 17 78 chr1 51254765 51254938 -230938726 - L1MC2 LINE L1 -1713 4433 4284 4236 166 61 45 chr1 51254943 51255210 -230938454 + L1MD1 LINE L1 5246 5507 -1129 2308 105 0 0 chr1 51255210 51255505 -230938159 - AluSx SINE Alu -16 296 2 4236 166 61 45 chr1 51255505 51255674 -230937990 + L1MD1 LINE L1 5507 5672 -964 261 0 0 0 chr1 51255674 51255703 -230937961 + (CA)n Simple_repeat Simple_repeat 2 30 0 4236 166 61 45 chr1 51255703 51256643 -230937021 + L1MD1 LINE L1 5672 6636 0 1990 161 0 3 chr1 51256750 51257055 -230936609 + AluSx SINE Alu 1 304 -8 316 322 25 8 chr1 51257071 51257189 -230936475 - MIR SINE MIR -75 187 68 59 38 0 0 chr1 51257346 51257426 -230936238 + AT_rich Low_complexity Low_complexity 1 80 0 233 163 0 0 chr1 51257468 51257517 -230936147 + L1MA9 LINE L1 6225 6273 -39 353 302 0 0 chr1 51257597 51257693 -230935971 + MIR3 SINE MIR 109 204 -4 7417 38 5 0 chr1 51257920 51259554 -230934110 - L1PA5 LINE L1 0 6154 4518 31 76 0 0 chr1 51259584 51259650 -230934014 + AT_rich Low_complexity Low_complexity 1 66 0 2098 173 26 7 chr1 51260104 51260532 -230933132 - L1MB2 LINE L1 -226 5942 5507 1067 148 46 0 chr1 51260534 51260730 -230932934 + L1MB2 LINE L1 5949 6153 -18 2058 140 0 0 chr1 51261175 51261467 -230932197 - AluJb SINE Alu -20 292 1 25 83 0 0 chr1 51261587 51261647 -230932017 + AT_rich Low_complexity Low_complexity 1 60 0 244 88 0 0 chr1 51261683 51261717 -230931947 - Alu SINE Alu -269 34 1 1453 167 120 0 chr1 51262389 51262647 -230931017 - AluJo SINE Alu -15 297 9 1364 280 67 21 chr1 51262683 51263320 -230930344 - L2 LINE L2 -99 3214 2549 430 169 11 22 chr1 51263410 51263499 -230930165 - MER8 DNA MER2_type -4 235 148 2301 108 0 3 chr1 51263528 51263842 -230929822 + AluSq SINE Alu 1 313 0 490 235 0 0 chr1 51263846 51263944 -230929720 - MER8 DNA MER2_type -79 160 63 693 189 12 61 chr1 51263944 51264108 -230929556 - MER21B LTR ERV1 -565 298 143 2161 110 36 0 chr1 51264186 51264487 -230929177 - AluSx SINE Alu 0 312 1 789 218 11 17 chr1 51264488 51264667 -230928997 - AluJ SINE Alu -15 297 120 478 182 18 0 chr1 51264671 51264781 -230928883 + CT-rich Low_complexity Low_complexity 1 112 0 630 184 45 78 chr1 51264781 51264960 -230928704 - AluJo SINE Alu -11 301 129 224 140 40 20 chr1 51264960 51265010 -230928654 + T-rich Low_complexity Low_complexity 2 52 0 889 134 0 15 chr1 51265010 51265144 -230928520 - AluJo SINE Alu -169 133 2 2064 222 51 8 chr1 51265150 51265483 -230928181 + L1MEc LINE L1 1704 2021 -4375 1243 189 18 9 chr1 51265483 51265705 -230927959 + MER58A DNA MER1_type 1 224 0 2064 222 51 8 chr1 51265705 51266023 -230927641 + L1MEc LINE L1 2021 2383 -4013 233 333 49 42 chr1 51266046 51266310 -230927354 + L1MD2 LINE L1 34 299 -6241 491 205 19 83 chr1 51266930 51267135 -230926529 + L1MD2 LINE L1 2620 2811 -3729 262 200 35 35 chr1 51267193 51267278 -230926386 - L1M4 LINE L1 -3728 2418 2334 1424 192 0 15 chr1 51267281 51267541 -230926123 + AluJb SINE Alu 49 304 -8 4926 225 83 36 chr1 51267562 51267653 -230926011 + L1MD2 LINE L1 3765 3850 -2903 1599 175 93 4 chr1 51267653 51267933 -230925731 - AluJb SINE Alu -7 305 1 4926 225 83 36 chr1 51267933 51268196 -230925468 + L1MD2 LINE L1 3850 4099 -2654 2046 144 10 13 chr1 51268196 51268508 -230925156 + AluJb SINE Alu 2 312 0 4926 225 83 36 chr1 51268508 51269552 -230924112 + L1MD2 LINE L1 4099 5092 -1661 1595 166 3 31 chr1 51269552 51269842 -230923822 + AluJo SINE Alu 1 282 -30 4926 225 83 36 chr1 51269842 51271076 -230922588 + L1MD2 LINE L1 5092 6526 -227 1539 248 118 0 chr1 51271155 51271586 -230922078 - L2 LINE L2 -1211 2103 1622 2152 89 7 0 chr1 51271739 51272009 -230921655 - AluSx SINE Alu -2 310 39 936 179 6 6 chr1 51272385 51272547 -230921117 - AluJb SINE Alu -16 296 135 198 103 0 0 chr1 51272891 51272920 -230920744 + (A)n Simple_repeat Simple_repeat 1 29 0 1344 196 60 47 chr1 51274293 51274594 -230919070 + AluJo SINE Alu 1 305 -7 1169 184 38 8 chr1 51275172 51275198 -230918466 + L1M3 LINE L1 5319 5343 -821 1884 164 10 13 chr1 51275198 51275509 -230918155 + AluJo SINE Alu 3 312 0 1169 184 38 8 chr1 51275509 51275783 -230917881 + L1M3 LINE L1 5343 5628 -536 211 381 0 0 chr1 51276004 51276067 -230917597 + L2 LINE L2 3116 3178 -94 509 245 129 7 chr1 51276281 51276420 -230917244 + L2 LINE L2 51 206 -3108 497 265 4 119 chr1 51276446 51276706 -230916958 + L2 LINE L2 3084 3313 0 23 0 0 0 chr1 51276854 51276877 -230916787 + AT_rich Low_complexity Low_complexity 1 23 0 405 181 18 175 chr1 51277069 51277240 -230916424 - L1MA10 LINE L1 -6 6324 6163 555 320 56 19 chr1 51277481 51277750 -230915914 - L2 LINE L2 -559 2755 2477 2893 154 15 31 chr1 51277750 51278546 -230915118 + L1PA16 LINE L1 4830 5607 -559 1904 144 55 7 chr1 51278546 51278837 -230914827 + AluSx SINE Alu 1 305 -7 2893 154 15 31 chr1 51278837 51279016 -230914648 + L1PA16 LINE L1 5607 5787 -379 5590 154 21 13 chr1 51279016 51279907 -230913757 + L1PB1 LINE L1 4104 4987 -1164 2054 141 3 3 chr1 51279907 51280205 -230913459 + AluSq SINE Alu 1 298 -15 5590 154 21 13 chr1 51280205 51281349 -230912315 + L1PB1 LINE L1 4987 6149 -2 2314 119 47 18 chr1 51281387 51281774 -230911890 + L1PA16 LINE L1 5769 6166 0 527 271 59 25 chr1 51281781 51281984 -230911680 - L2 LINE L2 -832 2482 2273 535 263 42 15 chr1 51282072 51282304 -230911360 + L1M4 LINE L1 4138 4379 -1767 * 2519 192 74 52 chr1 51282301 51282502 -230911162 - L1ME2 LINE L1 -105 6059 5864 1826 125 29 7 chr1 51282502 51282782 -230910882 - AluJb SINE Alu -26 286 1 2519 192 74 52 chr1 51282782 51283408 -230910256 - L1ME2 LINE L1 -300 5864 5215 2100 120 7 19 chr1 51283468 51283776 -230909888 - AluSx SINE Alu -8 304 1 620 268 107 5 chr1 51283818 51284023 -230909641 + MIR SINE MIR 31 256 -6 431 268 121 56 chr1 51284603 51284801 -230908863 + MIR SINE MIR 52 262 0 2266 99 0 0 chr1 51284904 51285196 -230908468 - AluSx SINE Alu -20 292 1 559 193 0 8 chr1 51285314 51285433 -230908231 + Charlie1 DNA MER1_type 2637 2754 -7 2916 128 57 8 chr1 51285468 51285974 -230907690 - L1MA4A LINE L1 -4 6299 5769 983 159 0 6 chr1 51285974 51286131 -230907533 - AluSp SINE Alu -24 289 134 2125 93 10 17 chr1 51286131 51286433 -230907231 - AluSx SINE Alu -12 300 1 2264 146 5 2 chr1 51286433 51286831 -230906833 - L1MA4A LINE L1 -516 5787 5389 183 286 119 65 chr1 51287237 51287422 -230906242 + L2 LINE L2 2531 2725 -589 974 93 7 22 chr1 51287517 51287656 -230906008 + AluSx SINE Alu 1 137 -176 39733 60 5 4 chr1 51287658 51293792 -230899872 + L1PA5 LINE L1 2 6143 -11 1521 84 0 0 chr1 51293812 51294002 -230899662 + AluSx SINE Alu 119 308 -2 646 241 77 65 chr1 51294028 51294289 -230899375 + MER102a DNA MER1_type 60 323 -7 306 197 15 0 chr1 51294605 51294671 -230898993 + MIR SINE MIR 185 251 -11 302 314 36 90 chr1 51294637 51294860 -230898804 - MIR SINE MIR -51 211 1 * 180 316 51 25 chr1 51294883 51294962 -230898702 + L2 LINE L2 2677 2757 -557 1916 145 0 14 chr1 51295736 51296019 -230897645 - AluJo SINE Alu -14 298 20 765 183 0 80 chr1 51296020 51296195 -230897469 - AluJo SINE Alu -151 161 1 23 0 0 0 chr1 51297747 51297770 -230895894 + AT_rich Low_complexity Low_complexity 1 23 0 1885 153 0 4 chr1 51298205 51298479 -230895185 + AluJo SINE Alu 15 287 -25 702 268 100 9 chr1 51298864 51299095 -230894569 + MIR SINE MIR 11 262 0 2079 141 3 0 chr1 51299302 51299600 -230894064 + AluSx SINE Alu 1 299 -13 1700 133 24 51 chr1 51299770 51300064 -230893600 + AluSx SINE Alu 11 296 -16 337 119 0 0 chr1 51300082 51300141 -230893523 - L1MC4 LINE L1 0 8042 7984 1898 231 138 13 chr1 51300147 51300768 -230892896 - L1MC4 LINE L1 -95 7713 7171 1900 153 0 7 chr1 51300768 51301062 -230892602 - AluJb SINE Alu -20 292 1 1898 231 138 13 chr1 51301062 51301444 -230892220 - L1MC4 LINE L1 -637 7171 6838 208 0 62 0 chr1 51301444 51301476 -230892188 + (TA)n Simple_repeat Simple_repeat 2 35 0 1898 231 138 13 chr1 51301476 51301564 -230892100 - L1MC4 LINE L1 -970 6838 6762 2166 122 3 3 chr1 51301564 51301875 -230891789 - AluSx SINE Alu -1 311 1 1898 231 138 13 chr1 51301875 51301956 -230891708 - L1MC4 LINE L1 -1046 6762 6444 235 240 16 96 chr1 51302928 51303053 -230890611 + LTR16C LTR ERVL 305 419 -72 757 101 0 0 chr1 51303246 51303345 -230890319 - AluS SINE Alu -214 99 1 332 221 105 0 chr1 51303346 51303432 -230890232 - MER2 DNA MER2_type -250 95 1 1711 170 7 0 chr1 51303455 51303755 -230889909 + AluSx SINE Alu 2 303 -9 25 0 0 0 chr1 51304225 51304250 -230889414 + AT_rich Low_complexity Low_complexity 1 25 0 620 184 6 42 chr1 51304250 51304418 -230889246 + L1MB8 LINE L1 4272 4433 -1713 * 2348 163 45 45 chr1 51304416 51304930 -230888734 + L1PA16 LINE L1 5653 6166 0 413 152 50 30 chr1 51304927 51305026 -230888638 + L1MB8 LINE L1 4457 4557 -1589 * 1052 168 118 14 chr1 51305026 51305246 -230888418 + MLT1D LTR MaLR 3 245 -260 42353 36 1 4 chr1 51305255 51307445 -230886219 + L1PA3 LINE L1 3 2198 -3957 2406 40 40 0 chr1 51307445 51307744 -230885920 + AluY SINE Alu 1 311 0 42353 36 1 4 chr1 51307744 51311724 -230881940 + L1PA3 LINE L1 2198 6155 0 843 165 78 112 chr1 51311785 51311903 -230881761 + MLT1D LTR MaLR 270 378 -127 1685 144 59 7 chr1 51311903 51312201 -230881463 - AluSx SINE Alu 0 312 1 843 165 78 112 chr1 51312201 51312323 -230881341 + MLT1D LTR MaLR 378 503 -2 4394 172 32 17 chr1 51312324 51313928 -230879736 + L1MB8 LINE L1 4550 6173 -5 2011 142 0 3 chr1 51314341 51314655 -230879009 + AluSx SINE Alu 1 313 0 1774 185 7 3 chr1 51314784 51315087 -230878577 + AluJb SINE Alu 1 304 -8 1806 163 0 36 chr1 51315342 51315643 -230878021 + AluJb SINE Alu 2 291 -21 236 322 11 11 chr1 51315919 51316009 -230877655 + LTR16A1 LTR ERVL 43 132 -325 819 298 59 54 chr1 51316016 51316246 -230877418 - LTR16A LTR ERVL -5 445 211 2169 57 47 3 chr1 51316246 51316544 -230877120 - AluY SINE Alu 0 311 1 819 298 59 54 chr1 51316544 51316756 -230876908 - LTR16A LTR ERVL -239 211 1 439 251 104 29 chr1 51316825 51316962 -230876702 + LTR16A LTR ERVL 235 387 -70 540 145 0 0 chr1 51316964 51317047 -230876617 - MIR SINE MIR -133 129 47 1182 136 75 64 chr1 51317149 51317429 -230876235 - L1MB7 LINE L1 -7 6177 5895 4465 147 51 21 chr1 51317432 51317815 -230875849 - L1MB3 LINE L1 -2 6181 5811 204 40 0 0 chr1 51317815 51317840 -230875824 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 4465 147 51 21 chr1 51317840 51318357 -230875307 - L1MB3 LINE L1 -372 5811 5254 190 290 16 16 chr1 51318379 51318441 -230875223 - L2 LINE L2 -978 2336 2275 277 371 57 18 chr1 51318758 51319038 -230874626 - L2 LINE L2 -1262 2052 1762 646 211 28 0 chr1 51319045 51319187 -230874477 - MIR SINE MIR 0 262 117 237 237 0 0 chr1 51319224 51319283 -230874381 + (TA)n Simple_repeat Simple_repeat 2 60 0 2511 58 0 0 chr1 51319907 51320201 -230873463 + AluY SINE Alu 1 294 -17 1850 152 17 10 chr1 51320545 51320842 -230872822 - AluJb SINE Alu -11 301 3 1889 150 6 26 chr1 51321173 51321486 -230872178 - AluJb SINE Alu -5 307 1 635 247 11 56 chr1 51321512 51321690 -230871974 - MER5B DNA MER1_type -6 172 3 2454 75 0 3 chr1 51321696 51322001 -230871663 - AluY SINE Alu -7 304 1 493 202 104 27 chr1 51322016 51322166 -230871498 - L1ME1 LINE L1 0 6334 6015 2366 148 34 5 chr1 51322175 51322613 -230871051 + MER101 LTR ERV1 24 474 0 2252 180 36 52 chr1 51322647 51322952 -230870712 - L1ME1 LINE L1 -193 5973 5680 8583 105 13 12 chr1 51322952 51324246 -230869418 + HSMAR2 DNA Mariner 5 1300 -2 2252 180 36 52 chr1 51324246 51324522 -230869142 - L1ME1 LINE L1 -486 5680 5401 2286 74 27 10 chr1 51324605 51324901 -230868763 - AluSc SINE Alu -8 301 1 223 135 0 0 chr1 51325431 51325468 -230868196 - L2 LINE L2 0 3272 3236 2273 156 30 46 chr1 51326179 51326654 -230867010 + MLT1C LTR MaLR 1 467 0 183 300 0 33 chr1 51327259 51327319 -230866345 - L2 LINE L2 -1 3271 3214 21 0 0 0 chr1 51327475 51327496 -230866168 + AT_rich Low_complexity Low_complexity 1 21 0 201 184 41 0 chr1 51329361 51329410 -230864254 + (CCCG)n Simple_repeat Simple_repeat 3 53 0 356 229 211 18 chr1 51329920 51330029 -230863635 + L2 LINE L2 3163 3292 -21 186 237 51 34 chr1 51330373 51330432 -230863232 + MIR SINE MIR 129 188 -74 1037 198 46 0 chr1 51330453 51330650 -230863014 - AluJo SINE Alu -22 290 85 1726 174 3 22 chr1 51330718 51331034 -230862630 + AluJo SINE Alu 1 310 -2 433 277 44 29 chr1 51331211 51331348 -230862316 + L2 LINE L2 3134 3272 0 1504 92 0 24 chr1 51331377 51331583 -230862081 - AluSc SINE Alu -5 304 104 538 148 50 0 chr1 51331583 51331684 -230861980 + AluSg/x SINE Alu 199 304 -5 471 300 113 13 chr1 51332092 51332242 -230861422 + MER91A DNA MER1_type 32 196 0 23 0 0 0 chr1 51332597 51332620 -230861044 + AT_rich Low_complexity Low_complexity 1 23 0 1711 173 71 0 chr1 51332746 51333029 -230860635 - AluJo SINE Alu -9 303 1 2379 115 0 0 chr1 51333074 51333379 -230860285 - AluSq SINE Alu -8 305 1 237 330 34 11 chr1 51333452 51333540 -230860124 + MLT1K LTR MaLR 132 221 -367 497 310 66 68 chr1 51333547 51333912 -230859752 + MLT1K LTR MaLR 168 531 -57 2297 67 53 0 chr1 51333962 51334247 -230859417 + AluSg SINE Alu 2 301 -9 228 146 0 24 chr1 51334280 51334321 -230859343 - L1ME3 LINE L1 -30 6132 6093 585 258 41 13 chr1 51334342 51334656 -230859008 - L1ME3 LINE L1 -60 6102 5736 1216 269 82 32 chr1 51334662 51335074 -230858590 - LTR16B LTR ERVL -31 433 1 2121 328 60 53 chr1 51335074 51335984 -230857680 - ERVL LTR ERVL 0 5375 4474 1597 216 96 14 chr1 51335984 51336350 -230857314 - MSTD LTR MaLR 0 396 1 2121 328 60 53 chr1 51336350 51338166 -230855498 - ERVL LTR ERVL -901 4474 2655 1560 206 32 81 chr1 51338170 51338578 -230855086 + MLT2B1 LTR ERVL 1 388 -132 818 268 30 67 chr1 51338645 51338968 -230854696 - ERVL LTR ERVL -2395 2601 2297 235 354 117 9 chr1 51339082 51339293 -230854371 - LTR16B LTR ERVL -237 227 30 282 278 60 75 chr1 51339313 51339579 -230854085 - HAL1 LINE L1 -2156 351 90 436 134 0 15 chr1 51339600 51339667 -230853997 - MER58 DNA MER1_type 0 2420 2355 494 271 185 0 chr1 51339721 51339872 -230853792 + MER5A DNA MER1_type 11 189 0 275 271 0 14 chr1 51339873 51339943 -230853721 - HAL1 LINE L1 -2438 69 1 315 310 26 9 chr1 51340026 51340139 -230853525 + MIR3 SINE MIR 90 204 -4 294 205 0 0 chr1 51340270 51340332 -230853332 + MER69 DNA AcHobo 2 63 -114 2267 116 0 22 chr1 51340336 51340655 -230853009 - AluSx SINE Alu 0 312 1 2046 147 3 0 chr1 51340687 51340986 -230852678 - AluSx SINE Alu -12 300 1 482 231 29 0 chr1 51341007 51341111 -230852553 + MER69 DNA AcHobo 2418 2524 -2 2145 93 3 23 chr1 51341165 51341467 -230852197 + AluSg SINE Alu 1 296 -14 2800 245 86 48 chr1 51341910 51342882 -230850782 + HAL1 LINE L1 280 1294 -1213 1722 195 0 16 chr1 51342882 51343195 -230850469 + AluJo SINE Alu 1 308 -4 2800 245 86 48 chr1 51343195 51343246 -230850418 + HAL1 LINE L1 1294 1342 -1165 192 363 18 0 chr1 51343299 51343412 -230850252 - L2 LINE L2 -505 2809 2695 234 321 149 38 chr1 51343578 51344027 -230849637 - L2 LINE L2 -826 2488 1990 704 214 10 65 chr1 51344415 51344616 -230849048 - LTR41 LTR ERVL -583 190 1 8090 162 35 21 chr1 51344801 51344913 -230848751 + HSMAR1 DNA Mariner 7 116 -1171 207 0 0 0 chr1 51344913 51344936 -230848728 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8090 162 35 21 chr1 51344936 51345239 -230848425 + HSMAR1 DNA Mariner 116 413 -874 3435 14 0 0 chr1 51345239 51345642 -230848022 + SVA Other Other 1012 1414 0 8090 162 35 21 chr1 51345642 51345977 -230847687 + HSMAR1 DNA Mariner 413 742 -545 2113 105 40 7 chr1 51345977 51346273 -230847391 - AluSx SINE Alu -6 306 1 8090 162 35 21 chr1 51346273 51346783 -230846881 + HSMAR1 DNA Mariner 742 1287 0 405 254 109 12 chr1 51346871 51347036 -230846628 - ERVL LTR ERVL -279 5485 5305 2135 138 6 0 chr1 51347158 51347469 -230846195 + AluSq SINE Alu 1 313 0 379 194 32 8 chr1 51347470 51347594 -230846070 + GA-rich Low_complexity Low_complexity 2 128 0 215 74 0 0 chr1 51347594 51347621 -230846043 + (GGGAA)n Simple_repeat Simple_repeat 4 30 0 603 317 55 6 chr1 51347621 51348052 -230845612 - ERVL LTR ERVL -615 5149 4638 901 240 61 57 chr1 51348063 51348122 -230845542 - ERVL LTR ERVL -3230 2424 2367 2322 109 3 3 chr1 51348122 51348434 -230845230 - AluSx SINE Alu 0 312 1 901 240 61 57 chr1 51348434 51349061 -230844603 - ERVL LTR ERVL -3287 2367 1679 2059 160 5 47 chr1 51349129 51349510 -230844154 + MLT1A1 LTR MaLR 1 365 0 281 361 28 21 chr1 51349567 51349711 -230843953 - ERVL LTR ERVL -4200 1564 1420 537 350 49 40 chr1 51349797 51350166 -230843498 - ERVL LTR ERVL -4448 1316 939 2276 119 137 8 chr1 51350166 51350545 -230843119 + MSTA LTR MaLR 1 428 0 537 350 49 40 chr1 51350545 51350726 -230842938 - ERVL LTR ERVL -4825 939 761 784 273 92 72 chr1 51350828 51351187 -230842477 - MLT1J LTR MaLR -145 366 1 380 349 56 11 chr1 51351477 51351835 -230841829 + L1ME LINE L1 3543 3916 -2230 302 306 0 18 chr1 51352155 51352266 -230841398 + L1ME LINE L1 5559 5667 -454 2266 92 7 23 chr1 51352778 51353082 -230840582 + AluSp SINE Alu 1 299 -14 2226 109 0 0 chr1 51353207 51353500 -230840164 + AluSx SINE Alu 2 294 -18 581 51 26 0 chr1 51353969 51354047 -230839617 - MADE1 DNA Mariner 0 80 1 2230 98 24 3 chr1 51354446 51354741 -230838923 - AluSg SINE Alu -9 301 1 1751 197 19 71 chr1 51355476 51355518 -230838146 + L1ME2 LINE L1 4345 4388 -1758 2264 122 0 0 chr1 51355518 51355814 -230837850 + AluSx SINE Alu 1 296 -16 1751 197 19 71 chr1 51355814 51356218 -230837446 + L1ME2 LINE L1 4388 4761 -1385 2075 146 0 13 chr1 51356218 51356534 -230837130 + AluJb SINE Alu 1 312 0 1751 197 19 71 chr1 51356534 51356618 -230837046 + L1ME2 LINE L1 4761 4848 -1298 2399 151 53 17 chr1 51356631 51357042 -230836622 + MSTB LTR MaLR 1 426 0 8533 175 45 7 chr1 51357046 51357232 -230836432 + MSTB-int LTR MaLR 5 183 -1468 2308 97 0 7 chr1 51357232 51357531 -230836133 + AluSg SINE Alu 1 297 -13 180 0 0 0 chr1 51357531 51357551 -230836113 + (GA)n Simple_repeat Simple_repeat 2 21 0 8533 175 45 7 chr1 51357551 51358950 -230834714 + MSTB-int LTR MaLR 182 1651 0 2041 144 45 41 chr1 51358950 51359419 -230834245 + MSTB LTR MaLR 1 424 -2 3097 192 96 54 chr1 51359425 51359722 -230833942 + L1ME2 LINE L1 4872 5155 -1009 1939 176 0 3 chr1 51359722 51360029 -230833635 + AluJo SINE Alu 1 306 -6 3097 192 96 54 chr1 51360029 51360318 -230833346 + L1ME2 LINE L1 5155 5430 -734 2257 86 21 3 chr1 51360318 51360609 -230833055 + AluSp SINE Alu 1 296 -17 3097 192 96 54 chr1 51360609 51361266 -230832398 + L1ME2 LINE L1 5430 6154 -10 964 120 8 0 chr1 51361278 51361411 -230832253 + AluJ SINE Alu 1 134 -178 22 70 0 0 chr1 51361666 51361709 -230831955 + AT_rich Low_complexity Low_complexity 1 43 0 2124 137 73 12 chr1 51361863 51362206 -230831458 - THE1B LTR MaLR 0 364 1 11479 92 28 7 chr1 51362206 51362495 -230831169 - THE1B-int LTR MaLR 0 1580 1299 2182 131 0 3 chr1 51362495 51362800 -230830864 - AluSx SINE Alu -8 304 1 11479 92 28 7 chr1 51362800 51364052 -230829612 - THE1B-int LTR MaLR -281 1299 6 2517 112 31 11 chr1 51364057 51364414 -230829250 - THE1B LTR MaLR 0 364 1 4001 129 26 16 chr1 51364564 51364718 -230828946 + L1MA4A LINE L1 4644 4795 -1508 1597 193 0 0 chr1 51364718 51364982 -230828682 + AluJb SINE Alu 16 279 -33 306 0 0 0 chr1 51364984 51365018 -230828646 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 4001 129 26 16 chr1 51365018 51365818 -230827846 + L1MA4A LINE L1 4795 5610 -693 847 201 7 0 chr1 51365818 51365962 -230827702 + AluJ SINE Alu 138 282 -30 210 37 0 0 chr1 51365968 51365995 -230827669 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4492 116 14 11 chr1 51365995 51366705 -230826959 + L1MA4A LINE L1 5592 6303 0 2002 220 11 15 chr1 51366717 51367186 -230826478 + L1MD3 LINE L1 7062 7737 -253 712 192 0 16 chr1 51367233 51367358 -230826306 + FLAM_C SINE Alu 2 124 -19 414 306 190 18 chr1 51367563 51367952 -230825712 - L2 LINE L2 -1036 2278 1823 392 273 0 58 chr1 51368000 51368121 -230825543 + ERVL LTR ERVL 1346 1459 -4305 2266 115 19 36 chr1 51368121 51368485 -230825179 + THE1B LTR MaLR 1 358 -6 441 270 36 77 chr1 51368485 51368718 -230824946 + ERVL LTR ERVL 2617 2841 -2813 1708 173 2 112 chr1 51368718 51369128 -230824536 + MLT1A1 LTR MaLR 1 365 0 441 270 36 77 chr1 51369128 51369142 -230824522 + ERVL LTR ERVL 2841 2854 -2800 7520 69 12 71 chr1 51369181 51370294 -230823370 + SVA Other Other 1 1047 -339 630 254 49 22 chr1 51370300 51370485 -230823179 + ERVL LTR ERVL 2831 3034 -2634 286 150 25 113 chr1 51370457 51370537 -230823127 - ERVL LTR ERVL -1594 4170 4098 * 2088 138 0 0 chr1 51370581 51370878 -230822786 - AluSx SINE Alu -15 297 1 1086 159 12 0 chr1 51370899 51371069 -230822595 - FAM SINE Alu -1 174 3 1067 297 100 41 chr1 51371072 51371839 -230821825 + ERVL LTR ERVL 3049 3941 -1823 1420 124 62 0 chr1 51371854 51371951 -230821713 - AluJo SINE Alu -81 231 141 267 31 0 0 chr1 51371951 51371983 -230821681 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1420 124 62 0 chr1 51371983 51372094 -230821570 - AluJo SINE Alu -171 141 10 800 140 184 0 chr1 51372109 51372245 -230821419 + AluJo SINE Alu 121 281 -31 249 211 0 0 chr1 51372247 51372304 -230821360 + GA-rich Low_complexity Low_complexity 1 57 0 495 209 29 0 chr1 51372388 51372527 -230821137 + GA-rich Low_complexity Low_complexity 4 146 0 493 208 40 0 chr1 51372560 51372661 -230821003 + MLT1C-int LTR MaLR 1267 1371 0 1939 172 34 13 chr1 51372702 51373085 -230820579 + MLT1C LTR MaLR 59 449 -18 444 275 92 13 chr1 51373106 51373553 -230820111 - L1M4 LINE L1 -868 5278 4743 1289 145 33 9 chr1 51373553 51373767 -230819897 + MER20 DNA MER1_type 1 219 0 542 281 0 20 chr1 51373798 51373944 -230819720 - MIR SINE MIR -60 202 60 326 339 51 8 chr1 51374044 51374162 -230819502 - L2 LINE L2 -16 3256 3134 2517 68 0 0 chr1 51375114 51375408 -230818256 - AluSg SINE Alu -16 294 1 254 279 144 0 chr1 51375644 51375755 -230817909 - L2 LINE L2 -2 3311 3185 262 181 7 219 chr1 51375840 51375935 -230817729 - L2 LINE L2 -14 3258 3207 2041 116 49 0 chr1 51375935 51376220 -230817444 + AluSx SINE Alu 1 299 -13 262 181 7 219 chr1 51376220 51376279 -230817385 - L2 LINE L2 -65 3207 3137 216 289 62 58 chr1 51376307 51376515 -230817149 - L2 LINE L2 -240 3032 2824 426 305 18 74 chr1 51376617 51376815 -230816849 - L2 LINE L2 -863 2451 2243 965 232 87 128 chr1 51376815 51377266 -230816398 - LTR8A LTR ERV1 0 727 259 2178 125 3 0 chr1 51377266 51377563 -230816101 + AluSq SINE Alu 1 298 -15 965 232 87 128 chr1 51377563 51377826 -230815838 - LTR8A LTR ERV1 -468 259 43 2093 145 0 16 chr1 51377826 51378137 -230815527 + AluSx SINE Alu 1 306 -6 965 232 87 128 chr1 51378137 51378179 -230815485 - LTR8A LTR ERV1 -684 43 1 426 305 18 74 chr1 51378179 51378265 -230815399 - L2 LINE L2 -1071 2243 2183 1717 175 11 4 chr1 51378408 51378682 -230814982 - AluJb SINE Alu -33 279 4 402 208 0 0 chr1 51378786 51378863 -230814801 + L1MC3 LINE L1 7208 7284 -501 2791 133 34 0 chr1 51378863 51379277 -230814387 + MSTA LTR MaLR 1 428 0 9602 164 26 14 chr1 51379277 51380676 -230812988 + MSTA-int LTR MaLR 1 1424 -227 1363 118 90 5 chr1 51380676 51380888 -230812776 + MER30 DNA MER1_type 1 230 0 9602 164 26 14 chr1 51380888 51381119 -230812545 + MSTA-int LTR MaLR 1424 1651 0 2753 119 44 5 chr1 51381119 51381530 -230812134 + MSTA LTR MaLR 1 427 -1 2510 223 20 25 chr1 51381652 51382200 -230811464 + LTR31 LTR ERV1 75 619 0 2158 196 38 19 chr1 51382200 51382669 -230810995 + L1MD3 LINE L1 7516 7993 -2 345 292 106 42 chr1 51382885 51383098 -230810566 + L1ME LINE L1 4761 4959 -1187 2279 101 0 10 chr1 51383098 51383396 -230810268 + AluSx SINE Alu 1 295 -17 345 292 106 42 chr1 51383396 51383559 -230810105 + L1ME LINE L1 4959 5161 -985 * 551 182 33 16 chr1 51383557 51383678 -230809986 + L1ME LINE L1 5415 5537 -629 1258 269 76 8 chr1 51383754 51384137 -230809527 + LTR16C LTR ERVL 83 491 0 1548 137 122 7 chr1 51384688 51384958 -230808706 + AluSg1 SINE Alu 1 301 -8 671 303 11 16 chr1 51385054 51385239 -230808425 + MIR SINE MIR 1 184 -78 568 256 89 42 chr1 51386088 51386279 -230807385 + MIR SINE MIR 9 208 -54 335 208 146 21 chr1 51386289 51386385 -230807279 + L2 LINE L2 3206 3313 0 396 262 269 0 chr1 51386633 51386778 -230806886 - MER5A DNA MER1_type -2 187 4 1055 273 14 0 chr1 51386790 51387010 -230806654 - MER58A DNA MER1_type -1 223 1 219 299 58 46 chr1 51387244 51387331 -230806333 - MER91C DNA MER1_type -18 122 35 2080 145 0 3 chr1 51387435 51387746 -230805918 - AluJb SINE Alu -2 310 1 2566 115 193 28 chr1 51387825 51388329 -230805335 - LTR18B LTR ERVL -27 587 1 2416 91 0 7 chr1 51388846 51389153 -230804511 + AluSq SINE Alu 1 305 -8 258 347 41 8 chr1 51389165 51389286 -230804378 - LTR67 LTR ERVL -76 481 357 290 320 41 10 chr1 51389562 51389659 -230804005 - LTR67 LTR ERVL -352 205 106 192 265 60 60 chr1 51389976 51390059 -230803605 - L2 LINE L2 0 3272 3190 3006 68 6 0 chr1 51390085 51390438 -230803226 + THE1A LTR MaLR 1 355 0 12655 84 4 15 chr1 51390438 51390812 -230802852 + THE1A-int LTR MaLR 1 378 -1202 2126 108 0 14 chr1 51390812 51391126 -230802538 - AluSx SINE Alu 0 310 1 12655 84 4 15 chr1 51391126 51392348 -230801316 + THE1A-int LTR MaLR 378 1580 0 2682 92 20 3 chr1 51392348 51392697 -230800967 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr1 51392912 51392934 -230800730 + AT_rich Low_complexity Low_complexity 1 22 0 2314 155 10 56 chr1 51393223 51393278 -230800386 + MSTD LTR MaLR 1 57 -339 2232 116 0 0 chr1 51393278 51393572 -230800092 + AluSq SINE Alu 1 294 -19 2314 155 10 56 chr1 51393572 51393882 -230799782 + MSTD LTR MaLR 57 349 -47 1954 160 0 0 chr1 51393882 51394244 -230799420 + AluJb SINE Alu 1 362 0 2314 155 10 56 chr1 51394244 51394288 -230799376 + MSTD LTR MaLR 349 393 -3 1213 206 81 16 chr1 51394372 51394620 -230799044 - MLT1F LTR MaLR -4 538 275 473 206 39 10 chr1 51394620 51394722 -230798942 + L1M4 LINE L1 2467 2571 -3575 1177 34 13 27 chr1 51394802 51394951 -230798713 - SVA Other Other -1 1385 1239 431 187 11 11 chr1 51395092 51395183 -230798481 + MLT1G1 LTR MaLR 499 589 -6 308 122 0 0 chr1 51395272 51395313 -230798351 - MSTD LTR MaLR 0 396 356 933 212 30 52 chr1 51395332 51395542 -230798122 - MLT1F LTR MaLR -322 245 39 1821 127 0 89 chr1 51395542 51395866 -230797798 + AluSg SINE Alu 1 295 -15 933 212 30 52 chr1 51395866 51395886 -230797778 - MLT1F LTR MaLR -528 39 20 458 99 0 28 chr1 51395886 51395957 -230797707 - AluJo SINE Alu -9 303 235 1583 152 0 4 chr1 51395994 51396225 -230797439 - AluJo SINE Alu -82 230 1 342 293 225 38 chr1 51396250 51396619 -230797045 - L2 LINE L2 -32 3281 2844 4689 142 60 44 chr1 51397035 51397939 -230795725 + L1M4c LINE L1 2 919 -5465 818 185 0 116 chr1 51397939 51398009 -230795655 - FAM SINE Alu -149 172 95 843 146 7 36 chr1 51398009 51398146 -230795518 - AluJo/FLAM SINE Alu -169 133 1 818 185 0 116 chr1 51398146 51398264 -230795400 - FAM SINE Alu -226 95 6 7259 129 37 36 chr1 51398271 51398978 -230794686 + L1M4c LINE L1 914 1618 -4766 2060 134 3 0 chr1 51398978 51399281 -230794383 + AluSq SINE Alu 1 304 0 7259 129 37 36 chr1 51399281 51399516 -230794148 + L1M4c LINE L1 1618 1851 -4533 1670 200 0 29 chr1 51399516 51399831 -230793833 - AluJo SINE Alu -6 306 1 7259 129 37 36 chr1 51399831 51399890 -230793774 + L1M4c LINE L1 1851 1908 -4476 2084 127 14 0 chr1 51399890 51400174 -230793490 + AluSx SINE Alu 1 288 -24 7259 129 37 36 chr1 51400174 51400479 -230793185 + L1M4c LINE L1 1908 2225 -4159 1026 181 0 12 chr1 51400482 51400653 -230793011 + FRAM SINE Alu 1 169 -7 517 206 81 0 chr1 51400663 51400799 -230792865 + L1M4c LINE L1 2452 2598 -3784 877 194 19 7 chr1 51400818 51400973 -230792691 - FRAM SINE Alu -27 149 1 910 194 6 17 chr1 51400985 51401252 -230792412 + AluJb SINE Alu 112 376 0 4946 185 38 51 chr1 51401254 51402407 -230791257 + L1 LINE L1 3519 4656 -1490 630 270 0 0 chr1 51402409 51402535 -230791129 + FRAM SINE Alu 1 126 -50 799 157 7 27 chr1 51402612 51402759 -230790905 - AluSc SINE Alu 0 309 166 23 0 0 29 chr1 51402785 51402800 -230790864 + AT_rich Low_complexity Low_complexity 1 15 -18 2215 129 3 0 chr1 51402800 51403109 -230790555 + AluSx SINE Alu 1 310 -2 23 0 0 29 chr1 51403109 51403127 -230790537 + AT_rich Low_complexity Low_complexity 15 33 0 1862 166 3 16 chr1 51403129 51403436 -230790228 + AluJo SINE Alu 1 303 -9 2116 93 38 0 chr1 51403801 51404090 -230789574 + AluSq SINE Alu 1 300 -13 184 257 34 68 chr1 51404201 51404349 -230789315 + L2 LINE L2 2897 3039 -233 854 78 21 14 chr1 51405163 51405305 -230788359 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 1664 138 16 85 chr1 51405307 51405478 -230788186 - AluJo SINE Alu -26 286 144 2194 119 0 0 chr1 51405478 51405772 -230787892 + AluSx SINE Alu 1 294 -18 1664 138 16 85 chr1 51405772 51405905 -230787759 - AluJo SINE Alu -168 144 3 259 167 19 0 chr1 51405907 51405961 -230787703 - L1M LINE L1 -958 5333 5279 1018 259 102 3 chr1 51405961 51406305 -230787359 - Tigger8 DNA MER2_type -191 475 98 1760 79 4 29 chr1 51406318 51406559 -230787105 + AluY SINE Alu 1 235 -76 2607 102 54 15 chr1 51406660 51406939 -230786725 - HSMAR1 DNA Mariner -874 413 113 207 0 0 0 chr1 51406939 51406962 -230786702 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2607 102 54 15 chr1 51406962 51407074 -230786590 - HSMAR1 DNA Mariner -1174 113 7 708 214 10 65 chr1 51407259 51407460 -230786204 + LTR41 LTR ERVL 1 190 -583 294 331 164 37 chr1 51407849 51408577 -230785087 + L2 LINE L2 1990 2809 -505 2851 245 86 48 chr1 51408630 51408681 -230784983 - HAL1 LINE L1 -1165 1342 1294 1708 195 0 16 chr1 51408681 51408994 -230784670 - AluJo SINE Alu -4 308 1 2851 245 86 48 chr1 51408994 51409966 -230783698 - HAL1 LINE L1 -1213 1294 280 1958 92 30 27 chr1 51410409 51410704 -230782960 - AluSg SINE Alu -14 296 1 222 135 0 0 chr1 51411234 51411271 -230782393 - L2 LINE L2 0 3272 3236 2495 156 30 46 chr1 51411982 51412457 -230781207 + MLT1C LTR MaLR 1 467 0 254 181 83 14 chr1 51412562 51412634 -230781030 - L1MD2 LINE L1 -219 6140 6064 21 0 0 0 chr1 51413278 51413299 -230780365 + AT_rich Low_complexity Low_complexity 1 21 0 1393 38 0 11 chr1 51466673 51466856 -230726808 + L1PA4 LINE L1 5975 6155 0 207 167 0 0 chr1 51466872 51466914 -230726750 + (TA)n Simple_repeat Simple_repeat 2 43 0 2118 113 7 14 chr1 51467032 51467324 -230726340 + AluSx SINE Alu 1 290 -22 441 282 228 39 chr1 51467401 51467756 -230725908 - MLT1J LTR MaLR -46 465 44 300 265 15 0 chr1 51467828 51467896 -230725768 + L1MCa LINE L1 1996 2064 -4362 1008 170 29 58 chr1 51467896 51468102 -230725562 - MLT2B1 LTR ERVL -39 481 282 431 323 43 0 chr1 51468153 51468314 -230725350 - MIR SINE MIR -70 192 25 477 261 8 0 chr1 51468698 51468817 -230724847 - MIR SINE MIR -51 211 92 800 236 0 6 chr1 51468818 51468992 -230724672 + FRAM SINE Alu 1 173 -3 1898 165 22 8 chr1 51469088 51469446 -230724218 + MLT1A1 LTR MaLR 1 363 -2 886 295 99 75 chr1 51469447 51470152 -230723512 - L2 LINE L2 -362 2952 2231 288 235 74 0 chr1 51470159 51470239 -230723425 - ORSL DNA AcHobo 0 275 190 2489 108 19 60 chr1 51470239 51470613 -230723051 + MSTA LTR MaLR 1 358 -70 858 129 0 50 chr1 51470613 51470753 -230722911 - FLAM_C SINE Alu 0 133 1 2489 108 19 60 chr1 51470753 51470796 -230722868 + MSTA LTR MaLR 358 401 -27 1416 153 0 42 chr1 51470803 51471039 -230722625 - AluSg/x SINE Alu -2 308 83 2284 106 0 0 chr1 51471117 51471429 -230722235 - AluSx SINE Alu 0 312 1 887 154 42 0 chr1 51471436 51471579 -230722085 - FRAM SINE Alu -30 146 1 431 134 54 71 chr1 51471579 51471663 -230722001 - ORSL DNA AcHobo -124 151 68 2341 110 0 0 chr1 51471663 51471964 -230721700 + AluSg SINE Alu 1 301 -9 431 134 54 71 chr1 51471964 51471991 -230721673 - ORSL DNA AcHobo -207 68 42 533 284 153 24 chr1 51472009 51472343 -230721321 - MLT1L LTR MaLR 0 615 239 670 138 118 26 chr1 51472344 51472496 -230721168 + MLT1A1 LTR MaLR 1 166 -199 1018 127 7 0 chr1 51472496 51472646 -230721018 - AluJo SINE Alu -5 307 157 643 179 0 0 chr1 51472647 51472753 -230720911 - AluJo SINE Alu -205 107 2 1148 158 29 10 chr1 51472753 51472962 -230720702 + MLT1A1 LTR MaLR 152 364 -1 393 314 0 0 chr1 51472962 51473063 -230720601 - MLT1L LTR MaLR -373 242 142 184 289 26 0 chr1 51473125 51473201 -230720463 - L2 LINE L2 -1096 2218 2141 372 216 45 0 chr1 51473369 51473457 -230720207 + MIR SINE MIR 48 139 -123 193 337 0 23 chr1 51473525 51473611 -230720053 - L2 LINE L2 -555 2759 2676 822 216 78 23 chr1 51474257 51474475 -230719189 + MIR SINE MIR 33 262 0 572 254 85 11 chr1 51474491 51474668 -230718996 - MIR SINE MIR -59 203 14 490 262 157 14 chr1 51475908 51476118 -230717546 + MIR SINE MIR 20 259 -3 503 200 17 43 chr1 51476325 51476440 -230717224 - MER81 DNA DNA -2 112 1 317 356 78 31 chr1 51476740 51477127 -230716537 - L2 LINE L2 -209 3063 2652 537 200 0 0 chr1 51477130 51477245 -230716419 + AluJb SINE Alu 195 309 -3 379 155 86 86 chr1 51477358 51477373 -230716291 + AluJb SINE Alu 120 134 -168 2548 75 0 0 chr1 51477373 51477681 -230715983 + AluY SINE Alu 1 308 -3 379 155 86 86 chr1 51477681 51477781 -230715883 + AluJb SINE Alu 133 235 -67 213 258 0 0 chr1 51477881 51477974 -230715690 + G-rich Low_complexity Low_complexity 1 93 0 311 109 0 18 chr1 51477976 51478031 -230715633 + AluJb SINE Alu 244 297 -5 264 328 204 14 chr1 51478040 51478324 -230715340 - L2 LINE L2 -780 2534 2197 726 268 64 8 chr1 51478369 51478619 -230715045 - L2 LINE L2 -1264 2050 1787 399 269 113 46 chr1 51478650 51478888 -230714776 + L1ME LINE L1 5567 5820 -301 1977 126 35 0 chr1 51478897 51479183 -230714481 + AluSx SINE Alu 1 296 -16 1783 106 92 7 chr1 51479192 51479465 -230714199 + AluSx SINE Alu 1 296 -16 2086 123 3 3 chr1 51479505 51479798 -230713866 - AluJb SINE Alu -19 293 1 21 0 0 0 chr1 51480435 51480456 -230713208 + GC_rich Low_complexity Low_complexity 1 21 0 698 126 24 31 chr1 51482658 51482785 -230710879 + L2 LINE L2 3187 3312 -1 760 113 14 14 chr1 51483563 51483706 -230709958 + L1PB1 LINE L1 5929 6078 -76 286 151 4 7 chr1 51483838 51484081 -230709583 + AluSp SINE Alu 1 299 -4 1735 109 98 12 chr1 51484083 51484457 -230709207 + MER4-int LTR ERV1 2749 3166 -3432 2188 131 0 28 chr1 51484457 51484777 -230708887 + AluSx SINE Alu 1 311 -1 1735 109 98 12 chr1 51484777 51484832 -230708832 + MER4-int LTR ERV1 3166 3215 -3383 1849 107 0 0 chr1 51484837 51485070 -230708594 - AluSx SINE Alu -79 233 1 3233 99 64 53 chr1 51485072 51485516 -230708148 + MER4-int LTR ERV1 3960 4414 -2184 2528 73 0 0 chr1 51485516 51485818 -230707846 + AluY SINE Alu 1 302 -9 3233 99 64 53 chr1 51485818 51485979 -230707685 + MER4-int LTR ERV1 4414 4572 -2026 1834 82 16 0 chr1 51486079 51486324 -230707340 - AluY SINE Alu -62 249 1 2066 128 3 0 chr1 51486324 51486627 -230707037 - AluSx SINE Alu 0 304 1 1395 100 89 7 chr1 51486652 51486921 -230706743 - MER4-int LTR ERV1 -3571 3027 2737 1227 142 21 0 chr1 51486921 51487111 -230706553 + LTR8 LTR ERV1 1 194 -497 1105 108 9 1 chr1 51487111 51487287 -230706377 - MER4-int LTR ERV1 -4109 2489 1455 964 102 15 7 chr1 51487407 51487567 -230706097 - AluSg/x SINE Alu 0 306 146 1849 117 111 31 chr1 51487567 51487948 -230705716 - MER4-int LTR ERV1 -3621 2160 1811 2112 121 34 0 chr1 51487948 51488245 -230705419 + AluSp SINE Alu 1 307 -6 1849 117 111 31 chr1 51488245 51488281 -230705383 - MER4-int LTR ERV1 -3970 1811 948 2352 78 7 3 chr1 51488402 51488695 -230704969 + AluSq SINE Alu 7 300 -13 2477 76 0 3 chr1 51488732 51489033 -230704631 + AluSq SINE Alu 2 301 -12 1528 134 0 0 chr1 51489041 51489250 -230704414 + AluSx SINE Alu 1 209 -103 1821 169 0 0 chr1 51489520 51489838 -230703826 - AluJb SINE Alu 0 318 1 621 151 0 0 chr1 51490145 51490238 -230703426 - AluJ/FLAM SINE Alu -218 94 2 1910 127 4 4 chr1 51490303 51490570 -230703094 + AluSx SINE Alu 1 267 -45 2122 123 10 3 chr1 51490582 51490716 -230702948 + AluSx SINE Alu 1 133 -179 2402 91 10 0 chr1 51490716 51491012 -230702652 + AluSg SINE Alu 1 299 -11 2122 123 10 3 chr1 51491012 51491185 -230702479 + AluSx SINE Alu 133 310 -2 2149 193 56 20 chr1 51492098 51492543 -230701121 - MLT1C LTR MaLR 0 467 7 692 247 137 4 chr1 51492681 51492908 -230700756 - MIR SINE MIR -4 258 2 301 354 16 67 chr1 51493063 51493417 -230700247 - L2 LINE L2 -251 3021 2602 1778 174 35 0 chr1 51493685 51493802 -230699862 + AluJo SINE Alu 1 112 -200 315 71 0 0 chr1 51493802 51493844 -230699820 + (TAA)n Simple_repeat Simple_repeat 3 44 0 1778 174 35 0 chr1 51493844 51494014 -230699650 + AluJo SINE Alu 112 298 -14 1240 175 27 109 chr1 51494112 51494443 -230699221 - AluYb8 SINE Alu -13 305 2 242 293 61 10 chr1 51494598 51494697 -230698967 - L2 LINE L2 -542 2772 2669 464 250 62 31 chr1 51494726 51494918 -230698746 - MIR SINE MIR 0 262 65 2453 92 87 63 chr1 51494947 51495171 -230698493 - MSTC LTR MaLR 0 428 211 1546 197 28 24 chr1 51495171 51495461 -230698203 - AluJo SINE Alu -21 291 1 2453 92 87 63 chr1 51495461 51495573 -230698091 - MSTC LTR MaLR -217 211 78 2639 50 0 0 chr1 51495573 51495875 -230697789 + AluY SINE Alu 1 302 -9 2453 92 87 63 chr1 51495875 51495951 -230697713 - MSTC LTR MaLR -350 78 5 962 206 72 0 chr1 51495955 51496135 -230697529 - MER58A DNA MER1_type -5 219 27 2364 100 0 3 chr1 51496846 51497146 -230696518 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 51497412 51497434 -230696230 + AT_rich Low_complexity Low_complexity 1 22 0 763 324 77 45 chr1 51497521 51498018 -230695646 - L2 LINE L2 0 3272 2736 448 120 130 30 chr1 51498029 51498129 -230695535 + L1MB2 LINE L1 4745 4854 -1292 3801 145 8 21 chr1 51498154 51498715 -230694949 + L1MB2 LINE L1 5414 5966 -205 2079 127 7 13 chr1 51498715 51499015 -230694649 + AluJb SINE Alu 1 298 -14 3801 145 8 21 chr1 51499015 51499103 -230694561 + L1MB2 LINE L1 5966 6054 -117 1743 168 16 26 chr1 51499103 51499412 -230694252 + AluJo SINE Alu 1 306 -6 2253 97 7 3 chr1 51499429 51499729 -230693935 + AluSx SINE Alu 1 301 -11 636 181 90 45 chr1 51499757 51499890 -230693774 + FRAM SINE Alu 27 165 -11 2417 73 36 0 chr1 51499890 51500192 -230693472 + AluSp SINE Alu 1 313 0 459 145 36 48 chr1 51500194 51500306 -230693358 + L1MB2 LINE L1 6057 6132 -39 226 200 20 0 chr1 51500564 51500614 -230693050 - L2 LINE L2 0 3313 3263 212 232 188 0 chr1 51501381 51501450 -230692214 - L2 LINE L2 -1 3312 3231 411 248 117 51 chr1 51501479 51501693 -230691971 + MIR SINE MIR 19 246 -16 2011 229 72 58 chr1 51501866 51502556 -230691108 + L2 LINE L2 2301 3004 -309 751 135 71 8 chr1 51502749 51502875 -230690789 + AluJo SINE Alu 1 134 -178 416 216 62 0 chr1 51502912 51503009 -230690655 + L2 LINE L2 3211 3313 0 21 0 0 0 chr1 51503202 51503223 -230690441 + AT_rich Low_complexity Low_complexity 1 21 0 2074 131 7 10 chr1 51503347 51503652 -230690012 - AluSx SINE Alu -8 304 1 1953 156 0 17 chr1 51504071 51504372 -230689292 + AluJo SINE Alu 1 296 -16 1193 116 12 0 chr1 51504554 51504718 -230688946 - AluSg/x SINE Alu -12 298 133 9777 148 11 34 chr1 51504843 51507789 -230685875 + HERVH LTR ERV1 305 3587 -4126 3051 190 22 38 chr1 51507783 51508519 -230685145 + HERVH LTR ERV1 3806 4529 -3184 * 1034 194 5 0 chr1 51508519 51508715 -230684949 + HERVH LTR ERV1 6489 6685 -1028 1506 147 13 4 chr1 51508715 51508940 -230684724 - AluSx SINE Alu -85 227 1 3328 144 83 23 chr1 51508940 51509628 -230684036 - MER4-int LTR ERV1 -4877 1721 993 247 159 0 45 chr1 51509649 51509693 -230683971 - LTR49 LTR ERV1 -283 312 271 253 174 14 58 chr1 51509705 51509774 -230683890 - MER4-int LTR ERV1 -5848 750 685 2269 94 79 8 chr1 51509864 51510239 -230683425 - LTR7 LTR ERV1 -2 448 1 702 84 25 42 chr1 51510239 51510358 -230683306 - HERVH LTR ERV1 0 7713 7597 249 304 20 20 chr1 51510358 51510460 -230683204 - MLT1A1 LTR MaLR -262 103 2 237 309 144 0 chr1 51510838 51510935 -230682729 + MIR3 SINE MIR 67 177 -31 206 198 20 119 chr1 51511839 51511940 -230681724 - L2 LINE L2 -227 3045 2955 237 330 26 17 chr1 51512026 51512141 -230681523 - L2 LINE L2 -661 2653 2538 2512 52 7 16 chr1 51512196 51512504 -230681160 + AluSq SINE Alu 1 305 -8 1741 138 31 50 chr1 51512647 51512965 -230680699 + AluJb SINE Alu 1 312 0 218 277 128 0 chr1 51513036 51513130 -230680534 - L2 LINE L2 0 3313 3208 226 337 84 12 chr1 51513258 51513424 -230680240 - L2 LINE L2 -244 3028 2851 555 256 269 36 chr1 51513545 51513932 -230679732 + L2 LINE L2 2804 3280 -33 1178 174 118 81 chr1 51514102 51514534 -230679130 - LTR7 LTR ERV1 -2 448 1 880 122 8 0 chr1 51514563 51514686 -230678978 - FLAM_C SINE Alu -19 124 1 1583 147 138 3 chr1 51514718 51515051 -230678613 - LTR29 LTR ERV1 -228 394 17 1246 113 209 42 chr1 51515051 51515313 -230678351 - AluSg1 SINE Alu 0 302 1 392 307 60 0 chr1 51515562 51515712 -230677952 + MIR SINE MIR 93 251 -11 283 376 8 0 chr1 51515842 51515967 -230677697 + MIR3 SINE MIR 56 181 -27 800 242 78 20 chr1 51516660 51516904 -230676760 - MLT1J2 LTR MaLR -192 258 1 1795 123 0 19 chr1 51517007 51517276 -230676388 - AluSx SINE Alu -1 311 48 182 271 60 60 chr1 51517312 51517374 -230676290 + MIR SINE MIR 130 191 -71 1863 168 3 7 chr1 51517374 51517672 -230675992 + AluJo SINE Alu 1 297 -15 182 271 60 60 chr1 51517672 51517742 -230675922 + MIR SINE MIR 190 262 0 243 353 37 0 chr1 51518005 51518141 -230675523 - L2 LINE L2 -444 2870 2730 1220 181 28 4 chr1 51518209 51518457 -230675207 + MIR SINE MIR 3 256 -6 2265 109 0 26 chr1 51518464 51518777 -230674887 + AluSx SINE Alu 1 305 -7 2426 88 0 0 chr1 51518794 51519088 -230674576 + AluSx SINE Alu 1 294 -18 227 108 27 0 chr1 51519123 51519160 -230674504 + L2 LINE L2 3262 3299 -14 1956 128 61 7 chr1 51519187 51519483 -230674181 + AluSx SINE Alu 1 312 0 609 160 0 0 chr1 51519497 51519614 -230674050 + FRAM SINE Alu 54 170 0 1156 158 0 6 chr1 51519811 51519988 -230673676 + FRAM SINE Alu 1 176 0 205 350 26 0 chr1 51520028 51520077 -230673587 - L2 LINE L2 -236 3036 2990 2200 144 15 0 chr1 51520077 51520416 -230673248 + MER7A DNA MER2_type 1 342 -4 205 350 26 0 chr1 51520416 51520483 -230673181 - L2 LINE L2 -282 2990 2917 2311 97 13 7 chr1 51520593 51520903 -230672761 + AluSx SINE Alu 1 312 0 411 191 36 12 chr1 51520985 51521069 -230672595 + MER5A DNA MER1_type 16 101 -88 1373 139 11 96 chr1 51521159 51521440 -230672224 + AluJb SINE Alu 36 292 -20 2368 85 7 3 chr1 51521833 51522128 -230671536 - AluSc SINE Alu -13 296 1 859 128 16 0 chr1 51522746 51522871 -230670793 + AluJo/FLAM SINE Alu 1 127 -175 748 174 0 0 chr1 51522871 51522986 -230670678 - AluSp/q SINE Alu -14 299 185 23034 25 2 0 chr1 51523086 51526380 -230667284 + L1PA4 LINE L1 2690 5989 -166 811 240 205 59 chr1 51526600 51527009 -230666655 + MLT1H1 LTR MaLR 87 555 0 183 232 73 61 chr1 51527011 51527093 -230666571 + L2 LINE L2 3186 3268 -4 1522 203 10 14 chr1 51527448 51527744 -230665920 - AluJo SINE Alu -17 295 1 2135 110 0 44 chr1 51528159 51528477 -230665187 - AluSx SINE Alu -8 304 1 235 307 108 30 chr1 51528919 51529085 -230664579 + MLT1L LTR MaLR 429 607 -8 305 301 128 13 chr1 51529290 51529446 -230664218 + MIR SINE MIR 88 261 -1 281 306 73 8 chr1 51529690 51529814 -230663850 + MLT1H LTR MaLR 31 162 -387 357 241 144 43 chr1 51529962 51530149 -230663515 + MLT1H LTR MaLR 344 549 0 1742 171 9 29 chr1 51530267 51530582 -230663082 - AluJo SINE Alu -3 309 1 1927 175 0 0 chr1 51530660 51530946 -230662718 - AluJb SINE Alu -24 288 3 2380 65 10 10 chr1 51530998 51531291 -230662373 + AluSp SINE Alu 1 293 -20 28 0 0 0 chr1 51531623 51531651 -230662013 + AT_rich Low_complexity Low_complexity 1 28 0 458 136 73 18 chr1 51532245 51532355 -230661309 + L1ME3A LINE L1 6049 6164 -6 229 310 80 0 chr1 51532456 51532569 -230661095 - MIR SINE MIR -3 259 138 * 449 180 57 16 chr1 51532555 51532677 -230660987 + L2 LINE L2 1957 2083 -1231 237 314 23 0 chr1 51532734 51532820 -230660844 - L1MC4 LINE L1 -1339 6703 6616 210 37 0 0 chr1 51532820 51532847 -230660817 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 1437 155 0 96 chr1 51532847 51533118 -230660546 - AluJo SINE Alu -30 282 38 262 147 27 120 chr1 51533156 51533231 -230660433 - MIR SINE MIR -89 173 106 187 387 92 14 chr1 51533549 51533691 -230659973 - MER5A DNA MER1_type -4 185 33 233 167 0 21 chr1 51534058 51534106 -230659558 + L1PA7 LINE L1 6093 6139 -15 255 31 0 0 chr1 51534223 51534255 -230659409 + (CA)n Simple_repeat Simple_repeat 2 33 0 1489 144 35 35 chr1 51534264 51534521 -230659143 - AluJo SINE Alu -26 286 30 590 194 113 25 chr1 51535161 51535321 -230658343 + MIR SINE MIR 19 192 -70 26 0 0 0 chr1 51535369 51535395 -230658269 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr1 51535406 51535428 -230658236 + AT_rich Low_complexity Low_complexity 1 22 0 2203 79 69 3 chr1 51535437 51535728 -230657936 + AluSq SINE Alu 1 310 -3 1038 161 0 7 chr1 51535729 51535884 -230657780 - FRAM SINE Alu -22 154 1 574 156 0 10 chr1 51536051 51536147 -230657517 + MER4A LTR ERV1 4 98 -566 2789 84 144 16 chr1 51536156 51536260 -230657404 - LTR19A LTR ERV1 -1 485 396 271 0 0 0 chr1 51536260 51536290 -230657374 + (TTTA)n Simple_repeat Simple_repeat 1 180 0 2138 82 11 14 chr1 51536290 51536570 -230657094 - AluSc SINE Alu -30 279 1 2789 84 144 16 chr1 51536570 51536894 -230656770 - LTR19A LTR ERV1 -89 397 1 2123 119 0 19 chr1 51536928 51537066 -230656598 + AluSq SINE Alu 1 140 -173 2580 41 0 0 chr1 51537066 51537360 -230656304 + AluY SINE Alu 1 294 -17 2123 119 0 19 chr1 51537360 51537532 -230656132 + AluSq SINE Alu 140 305 -8 259 114 0 0 chr1 51537533 51537568 -230656096 + Alu SINE Alu 1 35 -264 3454 136 30 5 chr1 51537574 51538141 -230655523 - L1MA4A LINE L1 -230 6073 5493 1837 157 3 31 chr1 51538142 51538179 -230655485 - AluJb SINE Alu -2 310 273 216 67 0 0 chr1 51538179 51538209 -230655455 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1837 157 3 31 chr1 51538209 51538490 -230655174 - AluJb SINE Alu -39 273 1 1010 185 32 0 chr1 51538492 51538681 -230654983 - AluJo SINE Alu -13 299 105 1690 133 17 87 chr1 51538681 51539145 -230654519 - L1MA4A LINE L1 -743 5403 5043 1933 166 0 10 chr1 51539145 51539324 -230654340 - AluJo SINE Alu 0 312 136 1896 174 0 7 chr1 51539324 51539622 -230654042 - AluJb SINE Alu -16 296 1 1933 166 0 10 chr1 51539622 51539750 -230653914 - AluJo SINE Alu -176 136 8 1956 70 8 0 chr1 51539756 51540000 -230653664 - AluSp SINE Alu -5 308 63 1951 50 0 0 chr1 51540100 51540322 -230653342 - AluY SINE Alu -87 224 3 552 90 0 0 chr1 51540322 51540400 -230653264 + L1MA4A LINE L1 6110 6187 -116 526 176 0 0 chr1 51540400 51540485 -230653179 + AluJ/FLAM SINE Alu 2 86 -226 283 186 243 0 chr1 51540487 51540557 -230653107 - AluJo SINE Alu -121 181 95 1432 150 0 14 chr1 51540557 51540770 -230652894 - AluJb SINE Alu -102 210 1 365 364 20 15 chr1 51540854 51541052 -230652612 + L2 LINE L2 2871 3069 -203 641 87 87 29 chr1 51541071 51541175 -230652489 - MER46A DNA MER2_type -1 235 126 2265 98 0 7 chr1 51541301 51541597 -230652067 - AluSc SINE Alu -15 294 1 357 233 0 0 chr1 51542015 51542088 -230651576 - LTR49-int LTR ERV1 -4147 2184 2112 602 209 109 87 chr1 51542102 51542219 -230651445 - LTR49-int LTR ERV1 -4189 2142 2029 1824 165 7 10 chr1 51542219 51542522 -230651142 - AluJb SINE Alu -6 306 5 602 209 109 87 chr1 51542522 51542634 -230651030 - LTR49-int LTR ERV1 -4302 2029 1908 1844 191 40 74 chr1 51542642 51543167 -230650497 - LTR54 LTR ERV1 0 510 4 1671 107 13 9 chr1 51543318 51543551 -230650113 - AluSg/x SINE Alu -12 300 67 1019 51 8 0 chr1 51543613 51543731 -230649933 + AluYa5/8 SINE Alu 1 119 -192 1171 179 0 5 chr1 51543831 51544021 -230649643 - AluSx SINE Alu -123 189 1 6888 129 21 23 chr1 51544203 51544400 -230649264 + L1MA3 LINE L1 4271 4467 -1838 1476 119 9 0 chr1 51544400 51544610 -230649054 - AluSg/x SINE Alu -14 296 85 6888 129 21 23 chr1 51544610 51544951 -230648713 + L1MA3 LINE L1 4467 4807 -1498 2031 142 0 16 chr1 51544951 51545260 -230648404 + AluJo SINE Alu 1 304 -8 6888 129 21 23 chr1 51545260 51546269 -230647395 + L1MA3 LINE L1 4807 5817 -488 2530 61 0 0 chr1 51546269 51546566 -230647098 + AluY SINE Alu 2 298 -13 6888 129 21 23 chr1 51546566 51547055 -230646609 + L1MA3 LINE L1 5817 6305 0 325 244 122 8 chr1 51547336 51547459 -230646205 + MIR3 SINE MIR 28 155 -53 810 174 93 0 chr1 51547466 51547627 -230646037 - AluSg/x SINE Alu -9 301 126 752 165 25 0 chr1 51547683 51547804 -230645860 + AluJb SINE Alu 2 125 -187 186 271 68 59 chr1 51547909 51548027 -230645637 + MIR3 SINE MIR 50 168 -40 26 0 0 0 chr1 51548053 51548079 -230645585 + AT_rich Low_complexity Low_complexity 1 26 0 823 171 0 0 chr1 51548124 51548247 -230645417 + FRAM SINE Alu 3 125 -51 2146 123 0 19 chr1 51548288 51548606 -230645058 - AluSq SINE Alu -1 312 1 2151 141 28 11 chr1 51548610 51548965 -230644699 - L1PA16 LINE L1 0 6166 5806 1068 366 3 68 chr1 51548990 51549299 -230644365 - AluJo SINE Alu -13 289 1 831 165 0 0 chr1 51549300 51549427 -230644237 - FLAM_C SINE Alu -9 134 8 305 80 0 20 chr1 51549439 51549489 -230644175 - FAM SINE Alu 0 179 131 5609 139 31 76 chr1 51549537 51549598 -230644066 - L1 LINE L1 -1092 5054 4992 332 160 0 0 chr1 51549598 51549670 -230643994 - Alu SINE Alu 0 305 234 5609 139 31 76 chr1 51549670 51550049 -230643615 - L1 LINE L1 -1154 4992 4597 2368 93 20 0 chr1 51550049 51550349 -230643315 - AluSx SINE Alu -6 306 1 2473 78 7 0 chr1 51550349 51550658 -230643006 - AluSp SINE Alu -2 311 1 5609 139 31 76 chr1 51550658 51550670 -230642994 - L1 LINE L1 -1548 4598 4587 2083 129 14 3 chr1 51550670 51550965 -230642699 - AluSx SINE Alu -14 298 1 5609 139 31 76 chr1 51550965 51551662 -230642002 - L1 LINE L1 -1559 4587 3906 2138 118 0 0 chr1 51552084 51552363 -230641301 + AluSx SINE Alu 1 279 -33 1796 71 41 38 chr1 51552396 51552662 -230641002 - L1PA13 LINE L1 0 6163 5897 257 295 101 27 chr1 51553187 51553336 -230640328 + MIR SINE MIR 98 257 -5 618 247 123 0 chr1 51553349 51553543 -230640121 - MIR SINE MIR 0 262 47 1511 204 0 11 chr1 51553543 51553818 -230639846 + AluJo SINE Alu 1 272 -40 618 247 123 0 chr1 51553818 51553834 -230639830 - MIR SINE MIR -215 47 34 1770 164 31 0 chr1 51553835 51554121 -230639543 - AluSx SINE Alu -17 295 1 2088 126 0 7 chr1 51554302 51554618 -230639046 + AluSx SINE Alu 1 314 0 1305 254 68 31 chr1 51554660 51555014 -230638650 + MLT1E LTR MaLR 198 564 -29 2232 108 3 22 chr1 51555032 51555347 -230638317 - AluSx SINE Alu -3 309 1 847 163 8 0 chr1 51555349 51555478 -230638186 - AluJo/FLAM SINE Alu -182 130 1 2256 101 7 16 chr1 51555485 51555791 -230637873 - AluSx SINE Alu -8 304 2 2125 117 3 0 chr1 51555799 51556106 -230637558 - AluSp SINE Alu 0 308 1 304 152 0 0 chr1 51556108 51556174 -230637490 + L1MB7 LINE L1 6114 6179 -5 1985 137 24 0 chr1 51556659 51556951 -230636713 - AluSx SINE Alu -13 299 1 331 143 39 52 chr1 51557000 51557077 -230636587 + AluJ/FLAM SINE Alu 23 98 -204 2143 121 6 19 chr1 51557153 51557466 -230636198 + AluSx SINE Alu 1 309 -3 452 122 10 112 chr1 51557710 51557767 -230635897 - MER58B DNA MER1_type -2079 341 296 1763 189 10 3 chr1 51557767 51558063 -230635601 + AluJo SINE Alu 1 298 -14 452 122 10 112 chr1 51558063 51558103 -230635561 - MER58B DNA MER1_type -2124 296 254 343 322 39 74 chr1 51558388 51558561 -230635103 + L1MC2 LINE L1 498 676 -5443 2152 220 28 102 chr1 51558561 51559307 -230634357 + LTR8 LTR ERV1 1 691 0 343 322 39 74 chr1 51559307 51559375 -230634289 + L1MC2 LINE L1 676 730 -5389 1668 187 3 30 chr1 51559375 51559680 -230633984 + AluJb SINE Alu 1 297 -15 343 322 39 74 chr1 51559680 51559720 -230633944 + L1MC2 LINE L1 730 770 -5349 329 314 128 13 chr1 51559813 51560039 -230633625 + L1M4 LINE L1 3375 3626 -2520 262 140 60 0 chr1 51560039 51560089 -230633575 - FLAM_A SINE Alu -3 130 78 1424 160 4 34 chr1 51560094 51560362 -230633302 + AluJo SINE Alu 47 306 -6 406 306 23 19 chr1 51560362 51560578 -230633086 + L1MC2 LINE L1 2979 3195 -2934 1613 197 10 3 chr1 51560806 51561101 -230632563 + AluJo SINE Alu 1 297 -15 3797 141 43 6 chr1 51561119 51561772 -230631892 - Tigger3b DNA MER2_type -541 690 14 484 197 0 26 chr1 51561776 51561884 -230631780 + L1MC2 LINE L1 4418 4524 -1605 189 0 0 0 chr1 51561884 51561905 -230631759 + (TG)n Simple_repeat Simple_repeat 2 22 0 1266 171 0 9 chr1 51561927 51562138 -230631526 + AluJo SINE Alu 104 312 0 2942 139 40 43 chr1 51562141 51562233 -230631431 + L1MC2 LINE L1 5287 5378 -949 2616 145 14 19 chr1 51562233 51562660 -230631004 - MSTB LTR MaLR 0 426 2 2942 139 40 43 chr1 51562660 51562813 -230630851 + L1MC2 LINE L1 5378 5530 -797 2140 134 0 0 chr1 51562813 51563118 -230630546 + AluSg1 SINE Alu 1 305 -4 2942 139 40 43 chr1 51563118 51563424 -230630240 + L1MC2 LINE L1 5530 5837 -490 207 0 0 0 chr1 51563427 51563450 -230630214 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 419 167 52 31 chr1 51563458 51563554 -230630110 - HsTC2 DNA Tc2 -343 1555 1282 349 347 53 11 chr1 51563802 51564087 -230629577 + L1M4 LINE L1 4768 5064 -1082 2165 105 0 0 chr1 51564100 51564376 -230629288 + AluSx SINE Alu 1 276 -36 267 148 364 17 chr1 51564401 51564519 -230629145 + HsTC2 DNA Tc2 1739 1897 -1 458 118 0 108 chr1 51564639 51564741 -230628923 - L1PA10 LINE L1 0 6168 6078 631 157 0 0 chr1 51564741 51564830 -230628834 - AluJ/FLAM SINE Alu -215 97 9 973 144 34 0 chr1 51564984 51565261 -230628403 + AluSg/x SINE Alu 142 423 0 288 245 82 40 chr1 51565399 51565635 -230628029 + L1ME LINE L1 5647 5889 -275 49 45 0 11 chr1 51565727 51565776 -230627888 + AT_rich Low_complexity Low_complexity 1 50 -37 1836 151 3 14 chr1 51565776 51565907 -230627757 + AluJb SINE Alu 4 135 -177 2385 85 3 3 chr1 51565907 51566212 -230627452 + AluSc SINE Alu 1 305 -4 1836 151 3 14 chr1 51566212 51566365 -230627299 + AluJb SINE Alu 135 285 -27 49 45 0 11 chr1 51566365 51566403 -230627261 + AT_rich Low_complexity Low_complexity 50 87 0 518 282 41 64 chr1 51566411 51566677 -230626987 + MIR SINE MIR 2 261 -1 279 128 0 0 chr1 51566845 51566884 -230626780 + tRNA-Ser-AGC tRNA tRNA 1 39 -46 2087 109 46 0 chr1 51567058 51567342 -230626322 - AluSg SINE Alu -13 297 1 1900 149 0 10 chr1 51567612 51567901 -230625763 + AluJb SINE Alu 13 298 -14 609 149 113 50 chr1 51568451 51568592 -230625072 + MER20 DNA MER1_type 70 219 0 360 341 95 0 chr1 51569049 51569228 -230624436 - MIR SINE MIR -26 236 41 219 259 0 74 chr1 51570348 51570429 -230623235 - L3 LINE CR1 -9 1568 1494 700 261 111 13 chr1 51570493 51570660 -230623004 - MIR SINE MIR -13 249 53 2181 124 0 3 chr1 51570660 51570951 -230622713 + AluSc SINE Alu 1 290 -19 700 261 111 13 chr1 51570951 51571009 -230622655 - MIR SINE MIR -209 53 2 1290 111 11 6 chr1 51571125 51571306 -230622358 - AluSg/x SINE Alu -20 290 109 1022 95 0 0 chr1 51571407 51571533 -230622131 - AluSc SINE Alu -179 130 5 595 155 95 17 chr1 51571624 51571740 -230621924 - FAM SINE Alu -20 165 41 2584 48 0 3 chr1 51571801 51572096 -230621568 + AluY SINE Alu 1 294 -17 2353 97 0 0 chr1 51572107 51572405 -230621259 + AluSq SINE Alu 3 300 -13 412 305 112 18 chr1 51572462 51572685 -230620979 - L2 LINE L2 -850 2464 2221 2207 74 13 55 chr1 51572685 51572996 -230620668 + AluY SINE Alu 2 299 -12 391 59 0 0 chr1 51573216 51573267 -230620397 - MADE1 DNA Mariner -29 51 1 327 253 74 32 chr1 51573375 51573470 -230620194 - L3 LINE CR1 -108 1469 1371 1021 179 0 6 chr1 51573627 51573795 -230619869 - FRAM SINE Alu -14 162 1 1770 126 85 11 chr1 51573895 51574166 -230619498 + AluSx SINE Alu 1 291 -21 765 155 0 0 chr1 51574174 51574290 -230619374 + FLAM_C SINE Alu 2 117 -26 21 36 0 0 chr1 51574290 51574318 -230619346 + AT_rich Low_complexity Low_complexity 1 28 0 1044 96 6 32 chr1 51574419 51574576 -230619088 - AluSx SINE Alu -159 153 1 2150 129 0 3 chr1 51574670 51574980 -230618684 + AluSx SINE Alu 2 310 -2 2411 87 0 0 chr1 51575534 51575834 -230617830 - AluSg SINE Alu -10 300 1 695 156 0 0 chr1 51575867 51575976 -230617688 + AluJo/FLAM SINE Alu 6 114 -198 2216 104 0 3 chr1 51575976 51576288 -230617376 - AluSc SINE Alu 0 309 2 1880 144 7 23 chr1 51576318 51576624 -230617040 - AluSx SINE Alu -11 301 1 1069 162 22 70 chr1 51576713 51576942 -230616722 - AluJb SINE Alu -10 302 85 2097 105 3 7 chr1 51577028 51577324 -230616340 - AluSq SINE Alu -18 295 1 1092 98 0 0 chr1 51577881 51578024 -230615640 + AluSg/x SINE Alu 162 304 -8 382 215 0 0 chr1 51578040 51578119 -230615545 - AluJ/FRAM SINE Alu -6 296 218 6256 65 35 48 chr1 51578228 51579066 -230614598 + MER61-int LTR ERV1 2162 3010 -2207 2358 67 0 3 chr1 51579066 51579350 -230614314 - AluY SINE Alu -13 298 16 6256 65 35 48 chr1 51579350 51579389 -230614275 + MER61-int LTR ERV1 3010 3048 -2169 2674 7 0 0 chr1 51579389 51579705 -230613959 - AluYa5 SINE Alu 0 316 1 6256 65 35 48 chr1 51579705 51579773 -230613891 + MER61-int LTR ERV1 3048 3096 -2121 225 163 0 20 chr1 51579786 51579835 -230613829 - AluSq SINE Alu -2 298 251 7796 89 8 20 chr1 51579835 51580919 -230612745 - MER11C LTR ERVK 0 1071 1 2131 89 0 0 chr1 51580919 51581177 -230612487 - AluSq SINE Alu -55 258 1 7358 141 64 66 chr1 51581177 51581436 -230612228 + MER61B-int LTR ERV1 3082 3340 -1877 2181 108 0 26 chr1 51581436 51581741 -230611923 - AluY SINE Alu -14 297 1 7358 141 64 66 chr1 51581741 51582134 -230611530 + MER61B-int LTR ERV1 3340 3732 -1485 2221 83 22 0 chr1 51582134 51582431 -230611233 - AluSc SINE Alu 0 303 1 7358 141 64 66 chr1 51582431 51583876 -230609788 + MER61B-int LTR ERV1 3732 5217 0 1466 143 50 15 chr1 51583876 51584169 -230609495 + MER61B LTR ERV1 1 396 -29 6024 123 18 1 chr1 51584308 51585676 -230607988 + L1M1 LINE L1 4349 5737 -567 563 164 30 112 chr1 51585677 51585771 -230607893 + AluJo/FLAM SINE Alu 2 83 -229 2097 107 0 3 chr1 51585771 51586060 -230607604 + AluSx SINE Alu 14 301 -11 563 164 30 112 chr1 51586060 51586099 -230607565 + AluJo/FLAM SINE Alu 83 124 -188 341 283 43 0 chr1 51586513 51586605 -230607059 + L2 LINE L2 3213 3308 -5 206 237 0 0 chr1 51587765 51587803 -230605861 - L2 LINE L2 -18 3254 3217 * 387 241 23 0 chr1 51587801 51587888 -230605776 - MIR SINE MIR -118 144 56 2589 63 0 0 chr1 51589469 51589771 -230603893 - AluY SINE Alu -9 302 1 2366 74 3 62 chr1 51590891 51591215 -230602449 + AluSq SINE Alu 3 307 -6 800 169 0 22 chr1 51591402 51591538 -230602126 + FLAM_C SINE Alu 1 133 0 2196 130 0 9 chr1 51591542 51591857 -230601807 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 51591866 51591887 -230601777 + AT_rich Low_complexity Low_complexity 1 21 0 2552 78 3 0 chr1 51591887 51592194 -230601470 + AluSp SINE Alu 1 308 -5 2436 76 0 0 chr1 51592195 51592511 -230601153 + AluY SINE Alu 1 316 0 30 27 0 0 chr1 51592511 51592548 -230601116 + AT_rich Low_complexity Low_complexity 1 37 0 2408 97 3 0 chr1 51593501 51593809 -230599855 - AluSp SINE Alu -4 309 1 2271 122 0 10 chr1 51593885 51594197 -230599467 - AluSg SINE Alu -1 309 1 917 125 37 0 chr1 51594201 51594337 -230599327 - FRAM SINE Alu -18 158 18 820 133 8 8 chr1 51594491 51594611 -230599053 - FLAM_C SINE Alu -23 120 1 2324 105 0 0 chr1 51594639 51594935 -230598729 + AluSx SINE Alu 1 296 -16 1223 135 0 0 chr1 51594948 51595118 -230598546 + AluJb SINE Alu 142 311 -1 192 258 227 61 chr1 51595158 51595321 -230598343 - L2 LINE L2 -6 3266 3077 2171 124 0 0 chr1 51595746 51596028 -230597636 + AluSx SINE Alu 2 283 -29 2473 82 0 0 chr1 51596422 51596726 -230596938 + AluY SINE Alu 1 304 -7 1471 199 11 0 chr1 51596832 51597108 -230596556 - AluJo SINE Alu -23 289 11 243 255 31 102 chr1 51597111 51597163 -230596501 - MIR3 SINE MIR -54 154 111 2065 122 10 3 chr1 51597163 51597457 -230596207 + AluSx SINE Alu 1 296 -16 243 255 31 102 chr1 51597457 51597502 -230596162 - MIR3 SINE MIR -97 111 64 2471 79 0 16 chr1 51597502 51597817 -230595847 + AluSg SINE Alu 1 310 0 219 362 0 53 chr1 51598359 51598453 -230595211 - L2 LINE L2 -223 3049 2961 1966 140 16 16 chr1 51598619 51598751 -230594913 + AluSx SINE Alu 1 132 -180 2394 93 0 3 chr1 51598751 51599053 -230594611 + AluSg SINE Alu 1 301 -9 1966 140 16 16 chr1 51599053 51599228 -230594436 + AluSx SINE Alu 131 308 -4 2231 104 3 23 chr1 51599233 51599541 -230594123 + AluSx SINE Alu 1 302 -10 2363 117 0 0 chr1 51600233 51600541 -230593123 - AluSq SINE Alu -5 308 1 2401 91 7 0 chr1 51600545 51600852 -230592812 - AluSq SINE Alu -4 309 1 2187 107 10 3 chr1 51600856 51601147 -230592517 - AluSx SINE Alu -18 294 2 330 234 75 0 chr1 51601505 51601599 -230592065 + L2 LINE L2 2260 2360 -954 208 324 14 14 chr1 51601610 51601684 -230591980 + MIR SINE MIR 2 75 -187 1056 171 148 42 chr1 51601746 51601948 -230591716 + MER2 DNA MER2_type 2 250 -95 2474 71 3 0 chr1 51601948 51602243 -230591421 - AluSp SINE Alu -17 296 1 1056 171 148 42 chr1 51602243 51602350 -230591314 + MER2 DNA MER2_type 250 344 -1 1793 190 0 3 chr1 51602463 51602758 -230590906 + AluJb SINE Alu 7 300 -12 1633 147 102 4 chr1 51602860 51603000 -230590664 - AluJo SINE Alu -20 292 167 1779 188 0 3 chr1 51603000 51603304 -230590360 - AluJb SINE Alu -9 303 1 1633 147 102 4 chr1 51603304 51603429 -230590235 - AluJo SINE Alu -145 167 1 2520 57 0 7 chr1 51603440 51603737 -230589927 - AluY SINE Alu -16 295 1 2367 90 0 0 chr1 51604018 51604307 -230589357 - AluSc SINE Alu -20 289 1 2337 97 0 10 chr1 51604307 51604606 -230589058 - AluSx SINE Alu -16 296 1 785 176 95 179 chr1 51604944 51605240 -230588424 + AluJo SINE Alu 3 273 -39 180 0 0 0 chr1 51605264 51605284 -230588380 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 378 0 0 0 chr1 51605427 51605469 -230588195 + (CATA)n Simple_repeat Simple_repeat 1 42 0 343 289 111 28 chr1 51605998 51606212 -230587452 - MIR3 SINE MIR -6 256 11 213 321 25 12 chr1 51606808 51606889 -230586775 - MIR3 SINE MIR -17 191 110 263 292 0 0 chr1 51606998 51607063 -230586601 - MIR SINE MIR -30 232 168 2388 60 7 10 chr1 51607079 51607377 -230586287 - AluSg1 SINE Alu -12 297 1 183 80 0 0 chr1 51607455 51607480 -230586184 + (T)n Simple_repeat Simple_repeat 1 25 0 337 210 101 87 chr1 51607593 51607731 -230585933 - MIR SINE MIR -83 179 40 2586 63 3 0 chr1 51607963 51608265 -230585399 + AluSp SINE Alu 1 303 -10 1306 97 0 0 chr1 51608268 51608444 -230585220 + AluSc SINE Alu 134 309 0 947 117 0 0 chr1 51608444 51608572 -230585092 + AluSg/x SINE Alu 131 258 -54 2193 110 7 0 chr1 51608593 51608883 -230584781 + AluSp SINE Alu 1 292 -21 2131 100 58 0 chr1 51608885 51609176 -230584488 + AluSg SINE Alu 1 308 -2 1723 209 0 0 chr1 51609182 51609464 -230584200 + AluJo SINE Alu 1 282 -30 2328 104 0 16 chr1 51609519 51609835 -230583829 + AluSx SINE Alu 1 311 -1 239 284 158 53 chr1 51609934 51610091 -230583573 - L2 LINE L2 -1386 1928 1789 2020 149 6 16 chr1 51610091 51610406 -230583258 + AluJb SINE Alu 1 312 0 239 284 158 53 chr1 51610406 51610551 -230583113 - L2 LINE L2 -1525 1789 1594 2246 131 0 6 chr1 51610551 51610865 -230582799 + AluSx SINE Alu 1 312 0 203 317 0 0 chr1 51610896 51610956 -230582708 - L2 LINE L2 -2 3270 3211 1009 110 7 0 chr1 51610973 51611109 -230582555 + AluSx SINE Alu 1 137 -175 400 144 146 7 chr1 51611109 51611209 -230582455 + THE1C LTR MaLR 187 293 -73 1014 139 81 17 chr1 51611486 51611658 -230582006 + AluSx SINE Alu 118 300 -12 1799 167 3 11 chr1 51612584 51612871 -230580793 - AluJb SINE Alu -17 295 11 219 277 138 0 chr1 51612881 51612975 -230580689 + MIR SINE MIR 156 262 0 201 349 0 0 chr1 51613145 51613211 -230580453 + (CA)n Simple_repeat Simple_repeat 1 66 0 204 160 20 80 chr1 51613561 51613611 -230580053 - L2 LINE L2 0 3313 3267 1274 147 156 0 chr1 51613767 51613998 -230579666 + AluJo SINE Alu 44 310 -2 304 227 91 18 chr1 51614065 51614175 -230579489 + L1ME4a LINE L1 5569 5686 -435 877 119 0 0 chr1 51614199 51614317 -230579347 + FLAM_C SINE Alu 1 118 -25 349 246 65 111 chr1 51614328 51614527 -230579137 + L1ME4a LINE L1 5711 5900 -221 1328 204 0 26 chr1 51615024 51615047 -230578617 - AluJo SINE Alu -11 301 279 1936 132 0 78 chr1 51615047 51615380 -230578284 - AluSg SINE Alu -3 307 1 1328 204 0 26 chr1 51615380 51615620 -230578044 - AluJo SINE Alu -33 279 45 2202 110 0 71 chr1 51615663 51616000 -230577664 - AluSp SINE Alu 0 313 1 215 132 38 0 chr1 51616000 51616053 -230577611 + T-rich Low_complexity Low_complexity 1 55 0 1823 157 0 60 chr1 51616054 51616386 -230577278 - AluJb SINE Alu 0 312 1 1844 113 98 4 chr1 51617018 51617293 -230576371 + AluY SINE Alu 1 301 -10 2367 92 3 0 chr1 51617304 51617598 -230576066 + AluSp SINE Alu 1 295 -18 2419 88 0 0 chr1 51617608 51617903 -230575761 + AluY SINE Alu 1 295 -16 1262 129 0 0 chr1 51617903 51618073 -230575591 + AluSg/x SINE Alu 132 301 -9 21 0 0 0 chr1 51618284 51618305 -230575359 + AT_rich Low_complexity Low_complexity 1 21 0 2374 43 4 4 chr1 51618400 51618722 -230574942 - AluY SINE Alu 0 322 1 1985 145 0 26 chr1 51618876 51619179 -230574485 + AluSx SINE Alu 1 295 -17 2300 121 0 0 chr1 51619180 51619477 -230574187 + AluSq SINE Alu 1 297 -16 2270 108 3 3 chr1 51619477 51619784 -230573880 + AluSc SINE Alu 1 307 -2 340 313 87 0 chr1 51619858 51619973 -230573691 - L2 LINE L2 0 3272 3148 217 263 62 0 chr1 51620450 51620530 -230573134 + L3 LINE CR1 1155 1239 -338 725 171 9 10 chr1 51621337 51621480 -230572184 + MER20 DNA MER1_type 69 214 -5 2387 102 0 0 chr1 51621920 51622215 -230571449 + AluSc SINE Alu 1 295 -14 22 0 0 0 chr1 51622232 51622254 -230571410 + AT_rich Low_complexity Low_complexity 1 22 0 806 169 6 101 chr1 51622290 51622439 -230571225 + FRAM SINE Alu 1 132 -170 1742 187 7 3 chr1 51622439 51622738 -230570926 - AluJb SINE Alu -12 300 1 806 169 6 101 chr1 51622738 51622766 -230570898 + FRAM SINE Alu 132 161 -5 2005 114 36 4 chr1 51622766 51623047 -230570617 + AluSx SINE Alu 1 290 -22 1989 132 11 0 chr1 51623047 51623347 -230570317 + AluSx SINE Alu 1 303 0 894 155 0 0 chr1 51623366 51623495 -230570169 + FLAM_C SINE Alu 1 129 -4 27 49 0 0 chr1 51623510 51623551 -230570113 + AT_rich Low_complexity Low_complexity 1 41 0 262 116 0 0 chr1 51623551 51623594 -230570070 - FLAM_A SINE Alu -7 126 84 1663 113 0 0 chr1 51623649 51623871 -230569793 + AluSc SINE Alu 14 235 -74 573 197 0 8 chr1 51623936 51624045 -230569619 + FLAM_C SINE Alu 23 132 -180 2533 67 0 0 chr1 51624045 51624342 -230569322 - AluY SINE Alu -14 297 1 573 197 0 8 chr1 51624342 51624354 -230569310 + FLAM_C SINE Alu 132 143 -169 1983 114 53 4 chr1 51624361 51624642 -230569022 + AluSq SINE Alu 1 295 -18 1164 152 0 0 chr1 51624652 51624823 -230568841 + FRAM SINE Alu 1 165 -11 2298 104 3 13 chr1 51624912 51625221 -230568443 - AluSx SINE Alu -5 307 2 195 186 0 0 chr1 51625321 51625364 -230568300 + CT-rich Low_complexity Low_complexity 3 45 0 2297 103 0 3 chr1 51625511 51625813 -230567851 - AluSg SINE Alu -9 301 1 2427 83 0 7 chr1 51626105 51626407 -230567257 + AluSx SINE Alu 1 300 -12 2047 104 66 7 chr1 51626631 51626919 -230566745 - AluSx SINE Alu -7 305 1 1727 187 3 35 chr1 51626936 51627251 -230566413 - AluJb SINE Alu -7 305 1 2386 82 10 3 chr1 51627263 51627568 -230566096 - AluSp SINE Alu -6 307 1 2025 166 3 0 chr1 51627841 51628148 -230565516 + AluSx SINE Alu 3 310 -2 1792 153 3 59 chr1 51628177 51628380 -230565284 - AluJb SINE Alu -8 304 124 8726 45 0 0 chr1 51628380 51629346 -230564318 - LTR5 LTR ERVK 0 969 4 1792 153 3 59 chr1 51629346 51629463 -230564201 - AluJb SINE Alu -188 124 2 2158 105 7 39 chr1 51629743 51630048 -230563616 - AluSx SINE Alu -16 296 2 2334 100 0 0 chr1 51630049 51630349 -230563315 - AluSq SINE Alu -13 300 1 429 344 122 9 chr1 51630368 51630705 -230562959 + L2 LINE L2 2372 2746 -568 185 229 62 0 chr1 51630714 51630762 -230562902 - MIR SINE MIR -10 252 202 721 198 0 0 chr1 51631060 51631186 -230562478 - FLAM_A SINE Alu -5 137 12 2374 110 0 0 chr1 51631224 51631534 -230562130 - AluSg SINE Alu 0 310 1 2361 98 0 0 chr1 51631534 51631829 -230561835 - AluSg SINE Alu -14 296 1 236 390 44 15 chr1 51632310 51632446 -230561218 - L2 LINE L2 -4 3268 3129 2229 105 0 3 chr1 51632623 51632917 -230560747 + AluSq SINE Alu 1 293 -20 321 259 224 0 chr1 51632986 51633133 -230560531 - MIR SINE MIR 0 262 83 2211 86 18 0 chr1 51633181 51633461 -230560203 - AluSp SINE Alu -28 285 1 242 228 0 0 chr1 51633509 51633566 -230560098 + T-rich Low_complexity Low_complexity 1 57 0 1039 165 93 165 chr1 51633850 51633983 -230559681 - LTR34 LTR ERV1 -88 611 470 1828 85 24 4 chr1 51633983 51634231 -230559433 - AluSc SINE Alu -19 290 38 1039 165 93 165 chr1 51634231 51634404 -230559260 - LTR34 LTR ERV1 -229 470 286 2065 109 3 17 chr1 51634404 51634697 -230558967 + AluSx SINE Alu 1 289 -23 1039 165 93 165 chr1 51634697 51635048 -230558616 - LTR34 LTR ERV1 -413 286 1 24 0 0 0 chr1 51635434 51635458 -230558206 + GC_rich Low_complexity Low_complexity 1 24 0 1083 128 0 6 chr1 51636538 51636694 -230556970 - AluSg/x SINE Alu -24 288 134 2489 67 0 3 chr1 51636694 51637007 -230556657 - AluSx SINE Alu 0 312 1 2268 102 0 3 chr1 51637222 51637517 -230556147 - AluSg SINE Alu -8 302 9 2024 112 4 7 chr1 51637657 51637935 -230555729 + AluSp SINE Alu 5 281 -32 201 94 0 0 chr1 51637938 51637970 -230555694 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1651 149 13 44 chr1 51638876 51639059 -230554605 - AluJo SINE Alu -6 306 136 2373 77 0 13 chr1 51639059 51639369 -230554295 - AluSp SINE Alu -7 306 1 1651 149 13 44 chr1 51639369 51639501 -230554163 - AluJo SINE Alu -176 136 1 2343 72 0 3 chr1 51639745 51640049 -230553615 - AluY SINE Alu -8 303 1 1808 127 3 39 chr1 51640510 51640817 -230552847 - AluSq SINE Alu -12 301 6 243 103 0 0 chr1 51641023 51641062 -230552602 + (TC)n Simple_repeat Simple_repeat 2 40 0 794 151 16 0 chr1 51641081 51641207 -230552457 - FLAM_A SINE Alu -5 128 1 2290 89 0 0 chr1 51641927 51642231 -230551433 - AluY SINE Alu -7 304 1 6920 84 22 7 chr1 51643083 51644038 -230549626 - LTR5 LTR ERVK 0 969 1 660 99 0 20 chr1 51644384 51644485 -230549179 - AluSg/x SINE Alu -6 304 206 1082 138 0 0 chr1 51645004 51645163 -230548501 - AluSg/x SINE Alu -19 291 133 692 138 24 16 chr1 51645263 51645386 -230548278 - AluSq SINE Alu -65 248 125 * 761 54 0 0 chr1 51645383 51645475 -230548189 + AluY SINE Alu 158 249 -62 1275 109 63 32 chr1 51645475 51645696 -230547968 + AluSg/x SINE Alu 83 310 0 205 198 12 111 chr1 51645907 51645988 -230547676 + L3 LINE CR1 1201 1273 -304 538 208 9 0 chr1 51647242 51647348 -230546316 - FLAM_C SINE Alu -35 108 2 277 189 211 33 chr1 51647580 51647670 -230545994 - MIR SINE MIR -2 260 155 1972 123 10 0 chr1 51647670 51647963 -230545701 - AluSg SINE Alu -14 296 1 1992 125 3 3 chr1 51648051 51648346 -230545318 + AluSg SINE Alu 1 295 -15 1977 132 0 3 chr1 51650591 51650880 -230542784 - AluSx SINE Alu -24 288 1 224 284 158 53 chr1 51650880 51651025 -230542639 + L2 LINE L2 1594 1722 -1592 1865 149 6 16 chr1 51651025 51651340 -230542324 - AluJb SINE Alu 0 312 1 224 284 158 53 chr1 51651340 51651497 -230542167 + L2 LINE L2 1722 1928 -1386 2172 104 0 16 chr1 51651596 51651912 -230541752 - AluSx SINE Alu -1 311 1 1577 209 0 0 chr1 51651967 51652249 -230541415 - AluJo SINE Alu -30 282 1 1998 83 62 0 chr1 51652270 51652546 -230541118 - AluSg SINE Alu -17 293 1 2049 110 7 0 chr1 51652548 51652838 -230540826 - AluSp SINE Alu -21 292 1 930 117 0 0 chr1 51652859 51652987 -230540677 - AluSg/x SINE Alu -54 258 131 1223 97 0 0 chr1 51652987 51653163 -230540501 - AluSc SINE Alu 0 309 134 2438 63 3 0 chr1 51653166 51653468 -230540196 - AluSp SINE Alu -10 303 1 342 210 101 87 chr1 51653700 51653838 -230539826 + MIR SINE MIR 40 179 -83 183 80 0 0 chr1 51653951 51653976 -230539688 + (A)n Simple_repeat Simple_repeat 1 25 0 2225 64 7 10 chr1 51654054 51654352 -230539312 + AluSg1 SINE Alu 1 297 -12 281 292 0 0 chr1 51654368 51654433 -230539231 + MIR SINE MIR 168 232 -30 2231 88 10 10 chr1 51654695 51655003 -230538661 + AluSp SINE Alu 1 308 -5 21 0 0 0 chr1 51655087 51655108 -230538556 + AT_rich Low_complexity Low_complexity 1 21 0 1345 171 114 14 chr1 51655158 51655439 -230538225 + AluJo SINE Alu 1 309 -3 586 306 128 20 chr1 51655442 51655889 -230537775 - L2 LINE L2 -364 2950 2456 388 214 31 31 chr1 51656018 51656116 -230537548 + LTR45 LTR ERV1 428 525 0 2377 62 3 3 chr1 51656812 51657117 -230536547 - AluSq SINE Alu -8 305 1 6741 80 17 31 chr1 51659295 51660962 -230532702 - SVA Other Other -518 1386 322 1947 98 0 104 chr1 51661256 51661603 -230532061 - AluSq SINE Alu -2 311 1 2264 89 30 0 chr1 51662524 51662826 -230530838 + AluSx SINE Alu 1 311 -1 1638 85 58 0 chr1 51663584 51663807 -230529857 - AluSx SINE Alu -76 236 1 1732 158 0 35 chr1 51664000 51664311 -230529353 - AluJb SINE Alu -12 300 1 516 261 12 18 chr1 51664431 51664596 -230529068 + MER112 DNA MER1_type 1 164 -96 1720 179 0 3 chr1 51664673 51664975 -230528689 - AluJb SINE Alu -11 301 1 705 180 8 8 chr1 51664988 51665116 -230528548 - FLAM_C SINE Alu -5 128 1 1580 179 16 13 chr1 51665429 51665736 -230527928 - AluJo SINE Alu -4 308 1 2188 93 0 3 chr1 51665739 51666041 -230527623 - AluSc SINE Alu -8 301 1 1695 138 6 25 chr1 51666294 51666612 -230527052 + AluJb SINE Alu 1 312 0 241 302 121 50 chr1 51668267 51668449 -230525215 - L2 LINE L2 -527 2787 2593 256 231 0 0 chr1 51668554 51668606 -230525058 + 5S rRNA rRNA 1 52 -69 468 316 126 36 chr1 51668610 51668667 -230524997 - L2 LINE L2 -927 2387 2337 2090 108 7 0 chr1 51668667 51668973 -230524691 - AluSx SINE Alu -4 308 1 468 316 126 36 chr1 51668973 51669331 -230524333 - L2 LINE L2 -977 2337 1903 1282 159 122 15 chr1 51669331 51669601 -230524063 - AluSg SINE Alu -11 299 1 468 316 126 36 chr1 51669601 51669763 -230523901 - L2 LINE L2 -1411 1903 1757 236 285 211 16 chr1 51669775 51669898 -230523766 - MIR SINE MIR -6 256 110 1534 153 58 24 chr1 51670261 51670555 -230523109 + AluJb SINE Alu 1 304 -8 2262 73 0 20 chr1 51671352 51671653 -230522011 + AluSp SINE Alu 1 295 -18 330 87 0 0 chr1 51671653 51671699 -230521965 + (TG)n Simple_repeat Simple_repeat 1 46 0 30 0 0 0 chr1 51672690 51672720 -230520944 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 51672755 51672783 -230520881 + AT_rich Low_complexity Low_complexity 1 28 0 2318 87 0 0 chr1 51672853 51673152 -230520512 - AluSx SINE Alu -13 299 1 371 285 46 26 chr1 51673167 51673318 -230520346 + MIR SINE MIR 108 261 -1 239 269 15 0 chr1 51674156 51674223 -230519441 - L1ME4a LINE L1 -105 6016 5949 21 36 0 0 chr1 51674236 51674264 -230519400 + AT_rich Low_complexity Low_complexity 1 28 0 552 194 120 0 chr1 51674315 51674423 -230519241 + FLAM_A SINE Alu 1 121 -12 1337 278 70 58 chr1 51674425 51674888 -230518776 + L2 LINE L2 1242 1698 -1616 2256 110 0 0 chr1 51674888 51675198 -230518466 - AluSx SINE Alu -2 310 1 275 26 51 0 chr1 51675198 51675237 -230518427 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1832 139 0 11 chr1 51675237 51675524 -230518140 - AluJb SINE Alu -28 284 1 1337 278 70 58 chr1 51675524 51675644 -230518020 + L2 LINE L2 1697 1834 -1480 2826 156 48 7 chr1 51675656 51675844 -230517820 - L1MB4 LINE L1 -1 6179 6000 3480 146 42 10 chr1 51675844 51676447 -230517217 - LTR26E LTR ERV1 0 622 1 2826 156 48 7 chr1 51676447 51676816 -230516848 - L1MB4 LINE L1 -180 6000 5599 804 155 0 0 chr1 51676857 51676973 -230516691 + FLAM_C SINE Alu 2 117 -26 233 29 0 29 chr1 51676979 51677014 -230516650 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1371 137 19 44 chr1 51677028 51677298 -230516366 - L1MB2 LINE L1 -37 6134 5872 * 2296 185 40 13 chr1 51677290 51678062 -230515602 - L1MB4 LINE L1 -553 5621 4824 1826 141 27 10 chr1 51678071 51678370 -230515294 - AluJb SINE Alu -8 304 1 1473 205 24 3 chr1 51678372 51678665 -230514999 - AluJo SINE Alu -13 299 1 675 161 7 51 chr1 51678669 51678806 -230514858 - FLAM_C SINE Alu 0 133 3 419 174 35 23 chr1 51678808 51678894 -230514770 - FLAM_A SINE Alu -18 124 38 2165 108 3 0 chr1 51679387 51679683 -230513981 - AluSx SINE Alu -15 297 1 1837 121 0 7 chr1 51680506 51680786 -230512878 + AluSx SINE Alu 25 302 -10 239 52 0 86 chr1 51680824 51680882 -230512782 + (GGAAA)n Simple_repeat Simple_repeat 2 54 0 1142 123 5 68 chr1 51680945 51681075 -230512589 - L1PB2 LINE L1 0 6151 6039 2313 84 0 0 chr1 51681075 51681372 -230512292 - AluSc SINE Alu -12 297 1 1142 123 5 68 chr1 51681372 51681460 -230512204 - L1PB2 LINE L1 -112 6039 5947 246 338 66 37 chr1 51681595 51681731 -230511933 + MIR3 SINE MIR 5 144 -64 22 56 0 0 chr1 51681758 51681794 -230511870 + AT_rich Low_complexity Low_complexity 1 36 0 260 289 58 58 chr1 51681978 51682082 -230511582 + L2 LINE L2 3163 3266 -6 1963 107 0 0 chr1 51682172 51682442 -230511222 + AluSx SINE Alu 28 297 -15 2065 93 111 27 chr1 51682483 51682816 -230510848 - L1PA8A LINE L1 -1 6130 5770 181 254 0 75 chr1 51683141 51683208 -230510456 + L2 LINE L2 1357 1418 -1896 1423 174 12 4 chr1 51683626 51683879 -230509785 - AluJb SINE Alu -23 289 35 2483 56 0 0 chr1 51684087 51684391 -230509273 + AluY SINE Alu 1 304 -7 1772 166 0 3 chr1 51684403 51684704 -230508960 + AluJb SINE Alu 1 300 -12 329 293 66 9 chr1 51684705 51684811 -230508853 - L1M4 LINE L1 -3615 2531 2420 823 272 18 18 chr1 51684891 51685108 -230508556 + MIR SINE MIR 46 262 0 7028 169 48 19 chr1 51685153 51685944 -230507720 - L1MA3 LINE L1 -2 6303 5537 1930 117 31 3 chr1 51685944 51686234 -230507430 - AluSx SINE Alu -14 298 1 7028 169 48 19 chr1 51686234 51687023 -230506641 - L1MA3 LINE L1 -768 5537 4773 2134 100 3 26 chr1 51687023 51687332 -230506332 - AluSx SINE Alu -10 302 1 7028 169 48 19 chr1 51687332 51687526 -230506138 - L1MA3 LINE L1 -1532 4773 4586 1949 134 7 7 chr1 51687526 51687824 -230505840 - AluJo SINE Alu -14 298 1 7028 169 48 19 chr1 51687824 51688495 -230505169 - L1MA3 LINE L1 -1719 4586 3772 2263 105 0 16 chr1 51689603 51689917 -230503747 - AluY SINE Alu -2 309 1 2034 81 0 0 chr1 51690164 51690458 -230503206 + AluSg SINE Alu 40 310 0 2332 103 0 0 chr1 51690470 51690761 -230502903 + AluSx SINE Alu 1 291 -21 2067 93 111 27 chr1 51690808 51691141 -230502523 - L1PA8A LINE L1 -1 6130 5770 1503 178 12 4 chr1 51691951 51692204 -230501460 - AluJb SINE Alu -23 289 35 2309 71 0 71 chr1 51692326 51692649 -230501015 + AluSc SINE Alu 1 300 -9 1765 158 3 58 chr1 51692657 51692967 -230500697 + AluJb SINE Alu 1 293 -19 264 197 140 43 chr1 51692985 51693079 -230500585 - 7SLRNA srpRNA srpRNA -12 308 223 2358 89 0 3 chr1 51693398 51693691 -230499973 - AluSq SINE Alu -21 292 1 2371 92 0 0 chr1 51693941 51694233 -230499431 + AluSc SINE Alu 3 294 -15 448 188 0 0 chr1 51694294 51694379 -230499285 - L1MA3 LINE L1 -1 6304 6220 442 229 33 26 chr1 51694999 51695152 -230498512 - L1ME4a LINE L1 -1 6120 5967 472 189 158 0 chr1 51695285 51695325 -230498339 + L1 LINE L1 5014 5046 -1100 2517 81 0 0 chr1 51695325 51695634 -230498030 + AluY SINE Alu 2 310 -1 472 189 158 0 chr1 51695634 51695720 -230497944 + L1 LINE L1 5046 5160 -986 1942 102 15 4 chr1 51695722 51695988 -230497676 + AluSp SINE Alu 39 307 -6 1956 109 32 124 chr1 51695990 51696129 -230497535 + L1MA7 LINE L1 5830 5980 -311 2394 81 0 7 chr1 51696129 51696424 -230497240 + AluSc SINE Alu 1 293 -16 1956 109 32 124 chr1 51696424 51696726 -230496938 + L1MA7 LINE L1 5980 6230 -61 650 160 0 9 chr1 51696785 51696891 -230496773 + AluJb SINE Alu 11 115 -197 1219 173 0 0 chr1 51696944 51697141 -230496523 + AluJb SINE Alu 113 309 -3 1538 107 36 13 chr1 51697153 51697377 -230496287 + MER30 DNA MER1_type 2 230 0 870 226 113 9 chr1 51697382 51697594 -230496070 + MIR SINE MIR 29 262 0 213 39 0 0 chr1 51697643 51697669 -230495995 + (TTG)n Simple_repeat Simple_repeat 2 27 0 188 231 0 0 chr1 51698255 51698294 -230495370 - L2 LINE L2 0 3313 3275 822 184 134 0 chr1 51698332 51698511 -230495153 + MER3 DNA MER1_type 5 207 -2 335 119 0 17 chr1 51699589 51699648 -230494016 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 1494 159 101 8 chr1 51700221 51700478 -230493186 - AluJo SINE Alu -31 281 1 228 309 62 0 chr1 51701147 51701228 -230492436 + MIR SINE MIR 62 147 -115 443 156 13 13 chr1 51701260 51701337 -230492327 + AluJ/FLAM SINE Alu 2 78 -234 1024 144 148 61 chr1 51701347 51701607 -230492057 - LTR8A LTR ERV1 -11 716 434 2340 119 12 29 chr1 51701607 51701952 -230491712 + MER1B DNA MER1_type 1 339 0 1521 178 8 89 chr1 51702005 51702364 -230491300 - LTR8A LTR ERV1 -349 378 49 187 53 26 26 chr1 51702435 51702473 -230491191 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2300 105 0 3 chr1 51702597 51702893 -230490771 - AluSq SINE Alu -18 295 1 2081 112 32 0 chr1 51703050 51703327 -230490337 - AluSx SINE Alu -21 291 6 650 303 247 22 chr1 51703436 51704099 -230489565 + L2 LINE L2 2422 3258 -55 494 308 107 68 chr1 51704131 51704570 -230489094 + HAL1 LINE L1 239 694 -1813 23 33 0 0 chr1 51704616 51704646 -230489018 + AT_rich Low_complexity Low_complexity 1 30 0 2169 238 143 59 chr1 51704732 51705373 -230488291 + HAL1 LINE L1 1309 1895 -612 2593 102 17 0 chr1 51705373 51705725 -230487939 - THE1B LTR MaLR -2 362 5 2169 238 143 59 chr1 51705725 51705855 -230487809 + HAL1 LINE L1 1895 2013 -494 1306 171 126 27 chr1 51705855 51706118 -230487546 + AluJo SINE Alu 1 289 -23 2169 238 143 59 chr1 51706118 51706438 -230487226 + HAL1 LINE L1 2013 2493 -14 303 253 58 0 chr1 51706448 51706535 -230487129 - L2 LINE L2 -685 2629 2538 1863 144 3 35 chr1 51706535 51706847 -230486817 - AluJo SINE Alu -6 306 5 1659 181 3 30 chr1 51706976 51707274 -230486390 - AluJo SINE Alu -22 290 1 1111 143 0 18 chr1 51707332 51707500 -230486164 - AluJb SINE Alu -21 291 127 194 194 15 0 chr1 51707509 51707576 -230486088 + (TA)n Simple_repeat Simple_repeat 1 68 0 889 155 0 0 chr1 51707576 51707705 -230485959 - AluJb SINE Alu -183 129 1 21 57 0 0 chr1 51707797 51707832 -230485832 + AT_rich Low_complexity Low_complexity 1 35 0 366 188 350 6 chr1 51707854 51708014 -230485650 - L2 LINE L2 -852 2462 2248 * 371 325 12 12 chr1 51708012 51708172 -230485492 + MIR SINE MIR 63 222 -40 567 263 89 11 chr1 51708292 51708372 -230485292 + MIR SINE MIR 60 132 -130 2237 115 3 6 chr1 51708372 51708685 -230484979 + AluSx SINE Alu 1 312 0 567 263 89 11 chr1 51708685 51708783 -230484881 + MIR SINE MIR 132 252 -10 219 232 0 0 chr1 51709925 51709981 -230483683 + T-rich Low_complexity Low_complexity 1 56 0 1434 166 31 0 chr1 51709984 51710213 -230483451 - AluJb SINE Alu -76 236 1 2352 100 3 0 chr1 51710433 51710734 -230482930 + AluSp SINE Alu 1 302 -11 1808 171 9 22 chr1 51710790 51711106 -230482558 - AluJo SINE Alu 0 312 1 192 77 0 0 chr1 51711106 51711132 -230482532 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 240 315 171 0 chr1 51711484 51711595 -230482069 + MIR SINE MIR 21 150 -112 2310 122 0 0 chr1 51711788 51712099 -230481565 - AluSq SINE Alu -2 311 1 2265 117 0 13 chr1 51712167 51712475 -230481189 - AluSx SINE Alu -8 304 1 2294 174 47 53 chr1 51712731 51713237 -230480427 - MLT1D LTR MaLR -2 503 1 319 226 241 8 chr1 51713275 51713408 -230480256 - Charlie7 DNA MER1_type -2448 164 1 1734 130 4 26 chr1 51713462 51713600 -230480064 + AluJb SINE Alu 1 132 -180 2290 114 0 0 chr1 51713600 51713899 -230479765 + AluSp SINE Alu 1 299 -14 1734 130 4 26 chr1 51713899 51714029 -230479635 + AluJb SINE Alu 132 263 -49 1291 174 0 5 chr1 51714538 51714745 -230478919 - MLT1A1 LTR MaLR 0 365 160 236 146 0 0 chr1 51714766 51714807 -230478857 - L1MB4 LINE L1 0 6180 6140 829 135 0 0 chr1 51714807 51714933 -230478731 - FLAM_C SINE Alu -7 126 1 2303 91 3 3 chr1 51715671 51715969 -230477695 + AluSx SINE Alu 1 298 -14 1987 154 0 0 chr1 51716902 51717207 -230476457 - AluSx SINE Alu -7 305 1 2338 96 0 0 chr1 51717219 51717511 -230476153 - AluSx SINE Alu -20 292 1 238 307 42 60 chr1 51717513 51717679 -230475985 - MIR SINE MIR -55 207 45 771 237 25 90 chr1 51717900 51718041 -230475623 + MIR SINE MIR 2 118 -144 430 198 73 0 chr1 51718041 51718137 -230475527 + U13 snRNA snRNA 2 104 0 771 237 25 90 chr1 51718137 51718274 -230475390 + MIR SINE MIR 118 262 0 844 184 6 13 chr1 51718303 51718461 -230475203 - AluJb SINE Alu -22 290 134 2415 85 0 0 chr1 51718461 51718755 -230474909 - AluY SINE Alu -15 296 3 2207 91 7 10 chr1 51718757 51719054 -230474610 - AluSp SINE Alu -6 307 12 710 169 0 0 chr1 51719073 51719191 -230474473 - AluJb SINE Alu -161 151 34 195 42 0 0 chr1 51719205 51719229 -230474435 + (T)n Simple_repeat Simple_repeat 1 24 0 203 333 146 51 chr1 51719274 51719524 -230474140 + L2 LINE L2 1767 1992 -1322 189 0 0 0 chr1 51719524 51719545 -230474119 + (CATA)n Simple_repeat Simple_repeat 4 24 0 2191 109 0 7 chr1 51719546 51719877 -230473787 - AluSq SINE Alu 0 329 1 203 333 146 51 chr1 51719877 51720152 -230473512 + L2 LINE L2 1992 2239 -1075 1549 151 77 25 chr1 51720152 51720437 -230473227 - AluJo SINE Alu -12 300 1 203 333 146 51 chr1 51720437 51720813 -230472851 + L2 LINE L2 2239 2758 -556 22 0 0 0 chr1 51721099 51721121 -230472543 + AT_rich Low_complexity Low_complexity 1 22 0 194 295 211 11 chr1 51721133 51721228 -230472436 + L2 LINE L2 3138 3251 -21 1354 190 139 0 chr1 51721625 51721883 -230471781 - AluSx SINE Alu -14 298 5 306 0 0 0 chr1 51721939 51721973 -230471691 + (TA)n Simple_repeat Simple_repeat 2 35 0 1678 154 18 78 chr1 51721973 51722171 -230471493 - AluJb SINE Alu -1 311 139 2038 113 4 4 chr1 51722171 51722445 -230471219 - AluSq SINE Alu -39 274 1 1678 154 18 78 chr1 51722445 51722577 -230471087 - AluJb SINE Alu -173 139 1 2335 104 7 0 chr1 51723591 51723900 -230469764 + AluSx SINE Alu 1 311 -1 2263 100 7 13 chr1 51726747 51727047 -230466617 - AluSx SINE Alu -14 298 1 212 286 155 0 chr1 51727098 51727182 -230466482 - L2 LINE L2 -5 3267 3171 306 295 57 9 chr1 51728554 51728659 -230465005 + L2 LINE L2 3174 3283 -30 2122 116 38 0 chr1 51729331 51729623 -230464041 - AluSx SINE Alu -9 303 1 1515 94 0 10 chr1 51731269 51731471 -230462193 - AluSg/x SINE Alu -35 277 78 21 57 0 0 chr1 51732082 51732117 -230461547 + AT_rich Low_complexity Low_complexity 1 35 0 2235 118 0 6 chr1 51732118 51732431 -230461233 + AluSx SINE Alu 1 311 -1 2452 71 3 0 chr1 51732452 51732762 -230460902 + AluY SINE Alu 1 311 0 2577 53 0 0 chr1 51732858 51732871 -230460793 - AluY SINE Alu -8 303 291 187 31 62 0 chr1 51732871 51732903 -230460761 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 2577 53 0 0 chr1 51732903 51733192 -230460472 - AluY SINE Alu -19 292 1 2090 112 14 3 chr1 51733193 51733488 -230460176 - AluSx SINE Alu -14 298 1 2406 100 0 0 chr1 51733533 51733843 -230459821 + AluSq SINE Alu 1 310 -3 337 176 22 121 chr1 51733860 51733927 -230459737 - Tigger2 DNA MER2_type 0 2708 2651 1567 190 7 20 chr1 51733927 51734227 -230459437 - AluJo SINE Alu -16 296 1 337 176 22 121 chr1 51734227 51734250 -230459414 - Tigger2 DNA MER2_type -57 2651 2627 2226 101 20 7 chr1 51734322 51734628 -230459036 - AluSq SINE Alu -3 310 1 2353 100 0 7 chr1 51734632 51734942 -230458722 - AluY SINE Alu -1 310 3 2294 110 0 0 chr1 51734945 51735244 -230458420 - AluSq SINE Alu -14 299 1 232 128 0 26 chr1 51735244 51735283 -230458381 - Tigger2 DNA MER2_type -69 2649 2612 4175 145 65 7 chr1 51735287 51735399 -230458265 - Tigger2 DNA MER2_type -1893 825 721 1771 158 24 7 chr1 51735399 51735697 -230457967 - AluJo SINE Alu -9 303 1 4175 145 65 7 chr1 51735697 51736322 -230457342 - Tigger2 DNA MER2_type -1997 721 45 622 200 0 0 chr1 51736331 51736436 -230457228 + FAM SINE Alu 20 124 -61 380 104 0 0 chr1 51736436 51736484 -230457180 + MER8 DNA MER2_type 192 239 0 2550 52 0 0 chr1 51736567 51736858 -230456806 - AluY SINE Alu -20 291 1 262 198 48 63 chr1 51736858 51736947 -230456717 - L1MC/D LINE L1 -1928 5880 5790 2298 105 0 0 chr1 51736947 51737232 -230456432 - AluSx SINE Alu -23 289 5 262 198 48 63 chr1 51737232 51737257 -230456407 - L1MC/D LINE L1 -2018 5790 5766 * 879 188 37 8 chr1 51737255 51737463 -230456201 - L1MB8 LINE L1 -339 5839 5627 2318 107 3 0 chr1 51737463 51737763 -230455901 - AluSg SINE Alu -9 301 1 2369 86 3 19 chr1 51737818 51738131 -230455533 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr1 51738312 51738343 -230455321 + AT_rich Low_complexity Low_complexity 1 31 0 1075 120 19 6 chr1 51738349 51738507 -230455157 + AluSp SINE Alu 137 296 -17 371 209 43 123 chr1 51738799 51738918 -230454746 - L1ME4a LINE L1 0 6121 6021 2285 109 0 13 chr1 51738918 51739220 -230454444 + AluSx SINE Alu 1 298 -14 371 209 43 123 chr1 51739220 51739287 -230454377 - L1ME4a LINE L1 -100 6021 5950 311 304 0 0 chr1 51739289 51739368 -230454296 + L2 LINE L2 3194 3272 0 1882 111 4 0 chr1 51740306 51740559 -230453105 - AluSx SINE Alu -9 303 50 1356 110 0 86 chr1 51740686 51740931 -230452733 - AluSg/x SINE Alu 0 310 87 406 264 0 0 chr1 51740931 51741022 -230452642 + AluJo SINE Alu 76 166 -146 * 443 162 27 0 chr1 51741019 51741093 -230452571 - AluJ/FLAM SINE Alu -236 76 1 2036 116 0 0 chr1 51741099 51741392 -230452272 - AluY SINE Alu -18 293 1 357 206 15 168 chr1 51741394 51741459 -230452205 - L1MC4a LINE L1 -1980 5828 5791 1642 164 4 4 chr1 51741459 51741733 -230451931 - AluSx SINE Alu -38 274 1 357 206 15 168 chr1 51741733 51741798 -230451866 - L1MC4a LINE L1 -2017 5791 5718 2107 230 52 56 chr1 51741799 51742355 -230451309 - MLT2B3 LTR ERVL 0 554 1 2242 88 19 10 chr1 51742448 51742756 -230450908 + AluSx SINE Alu 1 311 -1 287 100 0 0 chr1 51742881 51742931 -230450733 - AluSc SINE Alu 0 299 250 1841 129 13 32 chr1 51743187 51743498 -230450166 + AluSg SINE Alu 1 305 -5 2338 83 0 13 chr1 51743600 51743912 -230449752 - AluSx SINE Alu -4 308 1 2002 113 0 3 chr1 51743917 51744225 -230449439 - AluSc SINE Alu 0 307 1 2215 76 10 3 chr1 51744230 51744534 -230449130 - AluSx SINE Alu -6 306 1 1896 140 7 0 chr1 51744546 51744839 -230448825 - AluSx SINE Alu -17 295 1 24 0 0 0 chr1 51744839 51744863 -230448801 + AT_rich Low_complexity Low_complexity 1 24 0 300 291 146 0 chr1 51744863 51744966 -230448698 + L2 LINE L2 3155 3272 0 273 306 106 61 chr1 51745081 51745261 -230448403 - MIR SINE MIR -12 250 63 1686 66 0 0 chr1 51745590 51745802 -230447862 - AluSg/x SINE Alu -16 294 83 2179 67 3 13 chr1 51745814 51746114 -230447550 - AluSg SINE Alu -13 297 1 1340 164 91 7 chr1 51748733 51749008 -230444656 - AluJo SINE Alu -14 298 1 322 179 60 0 chr1 51749237 51749304 -230444360 - AluJb SINE Alu -20 282 212 676 0 24 0 chr1 51749309 51749393 -230444271 + (TG)n Simple_repeat Simple_repeat 2 87 0 1408 162 0 11 chr1 51749393 51749658 -230444006 - AluJb SINE Alu -50 262 1 679 168 0 46 chr1 51749935 51750066 -230443598 - FLAM_A SINE Alu -8 125 1 1450 115 177 4 chr1 51750255 51750515 -230443149 - AluSx SINE Alu -7 305 1 973 107 190 0 chr1 51750515 51750731 -230442933 - Tigger2 DNA MER2_type -2356 362 106 243 0 0 0 chr1 51750731 51750758 -230442906 + (TA)n Simple_repeat Simple_repeat 2 28 0 754 189 0 0 chr1 51750763 51750895 -230442769 - AluSg/x SINE Alu -23 289 158 708 108 285 8 chr1 51750897 51751027 -230442637 + AluSg/x SINE Alu 124 289 -20 943 171 6 0 chr1 51751028 51751192 -230442472 + AluSx SINE Alu 1 165 -147 1906 130 0 0 chr1 51751195 51751471 -230442193 - AluSx SINE Alu -34 278 3 535 182 55 27 chr1 51751495 51751605 -230442059 - FLAM_C SINE Alu -17 126 14 1963 54 79 22 chr1 51751727 51752005 -230441659 + AluY SINE Alu 1 294 -17 243 0 0 0 chr1 51752027 51752054 -230441610 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1539 195 13 3 chr1 51752196 51752494 -230441170 - AluJo SINE Alu -11 301 1 1937 118 7 3 chr1 51752687 51752983 -230440681 + AluSx SINE Alu 1 297 -15 703 247 50 11 chr1 51753048 51753230 -230440434 + MER5A DNA MER1_type 1 189 0 2048 64 13 32 chr1 51753332 51753646 -230440018 + AluY SINE Alu 1 308 -3 244 26 0 0 chr1 51753753 51753792 -230439872 - Alu SINE Alu 0 300 262 252 231 44 22 chr1 51753805 51753896 -230439768 + MER5C DNA MER1_type 232 324 0 1503 201 7 10 chr1 51754411 51754720 -230438944 - AluJo SINE Alu -1 311 4 1458 184 16 26 chr1 51754889 51755060 -230438604 - AluJo SINE Alu -11 301 133 1986 106 10 7 chr1 51755060 51755352 -230438312 - AluSq SINE Alu -16 297 5 1458 184 16 26 chr1 51755352 51755484 -230438180 - AluJo SINE Alu -179 133 1 2286 93 0 0 chr1 51755585 51755886 -230437778 - AluSx SINE Alu -11 301 1 2992 116 52 24 chr1 51755963 51756323 -230437341 + MER75 DNA T2_type 1 380 -134 2172 102 3 10 chr1 51756323 51756627 -230437037 + AluSx SINE Alu 1 302 -10 2992 116 52 24 chr1 51756627 51756766 -230436898 + MER75 DNA T2_type 380 514 0 1499 166 0 72 chr1 51756794 51757125 -230436539 + AluJo SINE Alu 1 307 -5 1940 95 65 10 chr1 51757128 51757422 -230436242 + AluSq SINE Alu 1 310 -3 1333 175 52 16 chr1 51757615 51757866 -230435798 - AluJb SINE Alu -51 261 2 463 257 144 113 chr1 51757917 51758063 -230435601 + L2 LINE L2 1169 1309 -2005 901 212 178 19 chr1 51758063 51758201 -230435463 - AluJo SINE Alu -1 301 186 531 0 0 0 chr1 51758201 51758260 -230435404 + (TG)n Simple_repeat Simple_repeat 2 60 0 901 212 178 19 chr1 51758260 51758380 -230435284 - AluJo SINE Alu -116 186 2 463 257 144 113 chr1 51758380 51758587 -230435077 + L2 LINE L2 1309 1533 -1781 3175 192 173 88 chr1 51758588 51759293 -230434371 + Charlie1a DNA MER1_type 1 644 -2117 1812 133 85 3 chr1 51759293 51759623 -230434041 - L1MB2 LINE L1 -2 6169 5813 3175 192 173 88 chr1 51759623 51759782 -230433882 + Charlie1a DNA MER1_type 644 788 -1973 1890 133 30 3 chr1 51759782 51760083 -230433581 + AluSg SINE Alu 1 309 -1 3175 192 173 88 chr1 51760083 51760099 -230433565 + Charlie1a DNA MER1_type 788 801 -1960 1968 96 11 0 chr1 51760099 51760371 -230433293 + AluSx SINE Alu 1 275 -37 3175 192 173 88 chr1 51760371 51760811 -230432853 + Charlie1a DNA MER1_type 801 1436 -19 1026 315 143 44 chr1 51760816 51761244 -230432420 + L2 LINE L2 1521 1905 -1409 1531 101 5 0 chr1 51761244 51761452 -230432212 - AluSg/x SINE Alu -14 296 88 1026 315 143 44 chr1 51761452 51761849 -230431815 + L2 LINE L2 1905 2428 -886 212 152 63 89 chr1 51761897 51761976 -230431688 + MIR SINE MIR 120 196 -66 209 225 216 63 chr1 51762009 51762120 -230431544 + L2 LINE L2 2430 2557 -757 634 157 20 0 chr1 51762190 51762320 -230431344 - FRAM SINE Alu 0 174 43 1374 179 84 11 chr1 51762637 51762911 -230430753 - AluJo SINE Alu -18 294 1 2213 99 0 6 chr1 51762920 51763232 -230430432 - AluSg SINE Alu 0 310 1 329 285 108 32 chr1 51763296 51763454 -230430210 + L2 LINE L2 2807 2976 -338 198 0 0 0 chr1 51763458 51763480 -230430184 + (T)n Simple_repeat Simple_repeat 1 22 0 189 236 101 56 chr1 51763522 51763611 -230430053 + L2 LINE L2 3179 3271 -1 3497 201 65 19 chr1 51763725 51765065 -230428599 - L1ME1 LINE L1 -12 6154 4759 2415 53 10 0 chr1 51765250 51765552 -230428112 - AluY SINE Alu -2 309 5 1467 121 103 40 chr1 51766249 51766521 -230427143 - AluJb SINE Alu -19 293 5 267 329 41 0 chr1 51766527 51766600 -230427064 - MER81 DNA DNA -31 83 8 2189 89 3 3 chr1 51767200 51767503 -230426161 - AluSp SINE Alu -10 303 1 783 270 36 36 chr1 51767911 51768163 -230425501 - MIR SINE MIR -2 260 9 2246 89 3 0 chr1 51769063 51769356 -230424308 - AluSx SINE Alu -18 294 1 2116 116 3 0 chr1 51769369 51769670 -230423994 - AluSp SINE Alu -11 302 1 326 271 131 0 chr1 51773504 51773626 -230420038 - MIR SINE MIR -41 221 84 1928 131 3 10 chr1 51773742 51774039 -230419625 + AluSg SINE Alu 1 295 -15 292 203 198 8 chr1 51774136 51774274 -230419390 - MIR SINE MIR -40 168 1 704 222 13 20 chr1 51774426 51774579 -230419085 - AluJo/FRAM SINE Alu -16 296 145 1649 134 8 8 chr1 51774580 51774841 -230418823 - AluSx SINE Alu -51 261 1 2289 94 0 0 chr1 51775280 51775588 -230418076 - AluY SINE Alu -2 309 2 2209 69 0 44 chr1 51775679 51775996 -230417668 - AluY SINE Alu -8 303 1 838 181 18 41 chr1 51777106 51777277 -230416387 - AluJb SINE Alu -15 297 131 1159 216 24 50 chr1 51777315 51777612 -230416052 - AluJo SINE Alu -13 289 1 2303 86 0 0 chr1 51778370 51778672 -230414992 - AluSg SINE Alu -8 302 1 449 195 195 16 chr1 51779437 51779560 -230414104 + MIR SINE MIR 7 151 -111 1027 158 60 6 chr1 51779560 51779743 -230413921 - MER46A DNA MER2_type 0 236 44 757 176 0 0 chr1 51780276 51780395 -230413269 + FLAM_C SINE Alu 13 131 -12 2110 109 0 0 chr1 51780684 51780978 -230412686 - AluSg SINE Alu -16 294 1 1635 136 70 11 chr1 51782778 51783051 -230410613 - AluSq SINE Alu -24 289 1 346 236 319 16 chr1 51784306 51784497 -230409167 + MIR SINE MIR 12 260 -2 2257 70 7 13 chr1 51788556 51788857 -230404807 - AluY SINE Alu -12 299 1 2156 75 7 39 chr1 51788868 51789029 -230404635 - AluY SINE Alu -13 298 150 2255 80 0 7 chr1 51789029 51789331 -230404333 - AluY SINE Alu -11 300 1 2156 75 7 39 chr1 51789331 51789477 -230404187 - AluY SINE Alu -161 150 1 364 214 58 10 chr1 51789704 51789807 -230403857 + Tigger5 DNA MER2_type 10 117 -2206 767 175 0 16 chr1 51789867 51789993 -230403671 - FRAM SINE Alu -46 130 7 1147 169 12 58 chr1 51790005 51790166 -230403498 - AluSg/x SINE Alu -14 298 150 2236 76 10 7 chr1 51790166 51790470 -230403194 - AluY SINE Alu -6 305 1 1147 169 12 58 chr1 51790470 51790550 -230403114 - AluSg/x SINE Alu -162 150 68 239 241 0 35 chr1 51790598 51790656 -230403008 + L2 LINE L2 3201 3256 -16 342 0 0 0 chr1 51993228 51993266 -230200398 + (A)n Simple_repeat Simple_repeat 1 38 0 951 191 79 23 chr1 51993608 51993823 -230199841 + MIR SINE MIR 34 260 -2 1938 165 7 0 chr1 51994511 51994814 -230198850 + AluJo SINE Alu 1 305 -7 2064 142 20 0 chr1 51994954 51995257 -230198407 - AluSx SINE Alu -3 309 1 1046 168 93 45 chr1 51995257 51995548 -230198116 + MER41B LTR ERV1 331 635 0 2181 111 10 13 chr1 51996229 51996535 -230197129 - AluSq SINE Alu -8 305 1 554 217 9 17 chr1 51996887 51997002 -230196662 + FLAM_C SINE Alu 2 115 -18 519 221 38 30 chr1 51997363 51997494 -230196170 - FLAM_C SINE Alu -10 133 2 1960 159 0 7 chr1 51997785 51998093 -230195571 + AluSx SINE Alu 1 306 -6 2168 91 42 0 chr1 51998431 51998718 -230194946 + AluSq SINE Alu 1 299 -14 1619 190 3 11 chr1 51999091 51999398 -230194266 + AluJb SINE Alu 1 305 0 349 302 67 0 chr1 51999750 51999899 -230193765 - MLT1J2 LTR MaLR -12 438 280 630 250 58 32 chr1 51999932 52000226 -230193438 - L1MC4 LINE L1 -733 7228 6957 1050 186 92 20 chr1 52000296 52000602 -230193062 - L1MC5 LINE L1 -25 7936 7609 2374 77 10 0 chr1 52000629 52000926 -230192738 + AluSq SINE Alu 1 300 -13 440 288 69 12 chr1 52000926 52001080 -230192584 - L1MDa LINE L1 -2481 4059 3897 1163 193 9 5 chr1 52001082 52001294 -230192370 - AluJb SINE Alu -16 296 84 321 290 0 22 chr1 52001318 52001456 -230192208 - L1MDa LINE L1 -2665 3875 3741 1845 148 3 18 chr1 52001459 52001595 -230192069 + AluJb SINE Alu 1 137 -175 2347 96 0 0 chr1 52001595 52001888 -230191776 + AluSc SINE Alu 1 293 -16 1845 148 3 18 chr1 52001888 52002034 -230191630 + AluJb SINE Alu 137 279 -33 380 167 111 0 chr1 52002139 52002247 -230191417 + MLT1D LTR MaLR 379 498 -7 362 265 59 29 chr1 52002254 52002390 -230191274 + L1MEc LINE L1 1806 1945 -4451 2450 176 29 88 chr1 52002402 52002637 -230191027 + LTR8 LTR ERV1 1 248 -443 2224 129 48 28 chr1 52002637 52002994 -230190670 + THE1B LTR MaLR 1 364 0 2450 176 29 88 chr1 52002994 52003405 -230190259 + LTR8 LTR ERV1 248 609 -82 1294 89 18 0 chr1 52003405 52003574 -230190090 - AluSg/x SINE Alu -7 305 134 2119 117 0 29 chr1 52003574 52003747 -230189917 - AluSq SINE Alu -13 300 138 2336 105 0 0 chr1 52003747 52004041 -230189623 - AluSx SINE Alu -18 294 1 2119 117 0 29 chr1 52004041 52004176 -230189488 - AluSq SINE Alu -175 138 1 939 216 60 22 chr1 52004183 52004387 -230189277 - L1MDa LINE L1 -3699 2841 2622 1757 190 7 3 chr1 52004387 52004692 -230188972 + AluJb SINE Alu 1 306 -6 939 216 60 22 chr1 52004692 52004841 -230188823 - L1MDa LINE L1 -3918 2622 2480 1159 197 71 29 chr1 52004848 52005139 -230188525 + L1MEc LINE L1 2636 2946 -3269 2097 145 3 0 chr1 52005139 52005436 -230188228 + AluJb SINE Alu 1 298 -14 1159 197 71 29 chr1 52005436 52005494 -230188170 + L1MEc LINE L1 2946 3000 -3215 2260 116 0 0 chr1 52005523 52005816 -230187848 + AluSx SINE Alu 1 293 -19 331 307 201 33 chr1 52005851 52006275 -230187389 + L2 LINE L2 1428 1922 -1392 203 348 52 0 chr1 52006358 52006473 -230187191 + L2 LINE L2 2142 2262 -1052 195 349 38 30 chr1 52006520 52006652 -230187012 + L2 LINE L2 2373 2505 -809 425 113 31 52 chr1 52006925 52007022 -230186642 + AluSp/q SINE Alu 208 302 -11 1497 152 37 81 chr1 52007022 52007179 -230186485 - AluJo SINE Alu -28 284 145 2393 83 0 7 chr1 52007179 52007479 -230186185 - AluY SINE Alu -13 298 1 1497 152 37 81 chr1 52007479 52007618 -230186046 - AluJo SINE Alu -167 145 1 725 191 66 109 chr1 52007620 52007774 -230185890 + L1MEc LINE L1 2991 3150 -3065 1803 152 26 33 chr1 52007774 52008077 -230185587 + AluJb SINE Alu 1 301 -11 2275 115 0 16 chr1 52008077 52008417 -230185247 + AluSx SINE Alu 1 312 0 725 191 66 109 chr1 52008417 52008466 -230185198 + L1MEc LINE L1 3149 3199 -3016 1899 175 10 0 chr1 52008466 52008774 -230184890 + AluJo SINE Alu 1 311 -1 725 191 66 109 chr1 52008774 52008991 -230184673 + L1MEc LINE L1 3199 3395 -2820 2045 134 0 7 chr1 52009118 52009425 -230184239 + AluSx SINE Alu 1 305 0 27 0 0 0 chr1 52009425 52009452 -230184212 + AT_rich Low_complexity Low_complexity 1 27 0 2216 93 0 3 chr1 52009454 52009785 -230183879 + AluY SINE Alu 1 330 0 1921 163 0 3 chr1 52009931 52010231 -230183433 + AluJo SINE Alu 7 305 -7 2168 89 21 3 chr1 52010466 52010748 -230182916 + AluSx SINE Alu 1 287 -25 1887 118 8 0 chr1 52010748 52011002 -230182662 + AluSc SINE Alu 1 256 -53 326 269 65 78 chr1 52011004 52011249 -230182415 + L1M2 LINE L1 1774 2015 -4834 2054 116 0 7 chr1 52011252 52011563 -230182101 + AluJb SINE Alu 1 309 0 645 266 81 26 chr1 52011567 52011666 -230181998 + L1MC5 LINE L1 7154 7246 -715 2111 139 3 0 chr1 52011666 52011967 -230181697 - AluSx SINE Alu -6 306 5 645 266 81 26 chr1 52011967 52012175 -230181489 + L1MC5 LINE L1 7246 7478 -483 2127 123 3 31 chr1 52012181 52012498 -230181166 + AluSx SINE Alu 1 308 -4 1050 188 0 0 chr1 52012502 52012683 -230180981 + AluJb SINE Alu 127 307 -5 2223 80 21 3 chr1 52012741 52013030 -230180634 + AluSq SINE Alu 1 294 -19 634 149 8 58 chr1 52013042 52013163 -230180501 + AluSq/x SINE Alu 2 116 -197 1453 214 20 10 chr1 52013413 52013707 -230179957 + AluJo SINE Alu 1 297 -15 2380 86 3 0 chr1 52013707 52013999 -230179665 - AluSx SINE Alu -19 293 1 24 32 0 0 chr1 52014084 52014115 -230179549 + AT_rich Low_complexity Low_complexity 1 31 0 244 163 0 0 chr1 52014519 52014562 -230179102 + MLT1D LTR MaLR 22 64 -441 744 142 18 0 chr1 52014570 52014683 -230178981 - FLAM_A SINE Alu -16 126 12 1815 191 85 26 chr1 52014690 52015115 -230178549 + MLT1D LTR MaLR 53 502 -3 182 292 108 15 chr1 52015219 52015284 -230178380 + MIR SINE MIR 31 101 -161 2112 123 0 3 chr1 52015594 52015911 -230177753 + AluSx SINE Alu 1 316 0 1937 144 14 3 chr1 52017144 52017436 -230176228 + AluJb SINE Alu 1 295 -17 2299 122 3 0 chr1 52017438 52017749 -230175915 + AluSx SINE Alu 1 312 0 1825 158 29 29 chr1 52018902 52019213 -230174451 + AluJb SINE Alu 1 311 -1 1695 146 0 41 chr1 52019940 52020233 -230173431 + AluJb SINE Alu 26 307 0 617 320 120 9 chr1 52021075 52021300 -230172364 + MIR SINE MIR 11 260 -2 2372 97 7 0 chr1 52021342 52021641 -230172023 - AluSp SINE Alu -12 301 1 205 289 89 0 chr1 52021981 52022071 -230171593 + L2 LINE L2 2703 2800 -514 1717 163 62 3 chr1 52022244 52022532 -230171132 - AluJo SINE Alu -7 305 1 3816 212 71 60 chr1 52022535 52022778 -230170886 - HAL1 LINE L1 0 2507 2268 2184 127 0 3 chr1 52022778 52023077 -230170587 - AluSq SINE Alu -13 300 3 3816 212 71 60 chr1 52023077 52023657 -230170007 - HAL1 LINE L1 -239 2268 1696 2271 136 11 8 chr1 52023657 52024011 -230169653 + L1PA16 LINE L1 5800 6154 -12 1744 185 10 0 chr1 52024011 52024303 -230169361 + AluJb SINE Alu 1 295 -17 2624 52 7 0 chr1 52024306 52024615 -230169049 + AluY SINE Alu 1 311 0 3816 212 71 60 chr1 52024615 52024742 -230168922 - HAL1 LINE L1 -812 1695 1571 1779 164 10 14 chr1 52024742 52025035 -230168629 - AluJo SINE Alu -20 292 1 3816 212 71 60 chr1 52025035 52025408 -230168256 - HAL1 LINE L1 -936 1571 1159 2449 94 0 0 chr1 52025408 52025707 -230167957 - AluY SINE Alu -12 299 1 3816 212 71 60 chr1 52025707 52025719 -230167945 - HAL1 LINE L1 -1348 1159 1149 2054 101 22 0 chr1 52025839 52026151 -230167513 - AluSx SINE Alu 0 318 1 353 318 81 91 chr1 52027343 52027500 -230166164 + L2 LINE L2 2870 3027 -245 2081 127 17 7 chr1 52027500 52027780 -230165884 + AluSx SINE Alu 1 286 -26 188 35 35 0 chr1 52027780 52027809 -230165855 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 353 318 81 91 chr1 52027819 52028045 -230165619 + L2 LINE L2 3027 3249 -23 * 355 304 17 9 chr1 52028041 52028156 -230165508 + MIR3 SINE MIR 82 197 -11 207 298 128 11 chr1 52028734 52028828 -230164836 - L3 LINE CR1 -227 1350 1246 * 499 341 0 0 chr1 52028800 52028935 -230164729 + MIR SINE MIR 19 153 -109 229 221 0 52 chr1 52029183 52029260 -230164404 - MIR SINE MIR -71 137 65 2151 109 3 3 chr1 52030038 52030347 -230163317 - AluSq SINE Alu 0 309 1 197 214 107 0 chr1 52031876 52031932 -230161732 + MIR SINE MIR 110 171 -91 454 100 0 0 chr1 52031979 52032039 -230161625 + AluJ/FLAM SINE Alu 9 68 -234 613 128 43 21 chr1 52032039 52032133 -230161531 - AluSg/x SINE Alu -51 259 164 878 188 32 38 chr1 52032133 52032319 -230161345 + AluJo SINE Alu 104 288 -24 2016 159 0 0 chr1 52032344 52032646 -230161018 + AluSx SINE Alu 11 312 0 386 305 19 0 chr1 52032954 52033059 -230160605 + L2 LINE L2 3139 3245 -27 301 305 0 9 chr1 52033413 52033518 -230160146 + (CA)n Simple_repeat Simple_repeat 1 104 0 351 303 0 0 chr1 52033566 52033688 -230159976 + (TG)n Simple_repeat Simple_repeat 2 123 0 212 281 20 41 chr1 52033733 52033879 -230159785 + (TATG)n Simple_repeat Simple_repeat 1 143 0 2436 76 0 10 chr1 52035496 52035798 -230157866 - AluY SINE Alu -12 299 1 695 252 103 29 chr1 52036371 52036496 -230157168 - MIR SINE MIR 0 262 148 3131 194 45 30 chr1 52036496 52036676 -230156988 + MER82 DNA MER2_type 1 177 -476 2402 101 0 0 chr1 52036676 52036973 -230156691 + AluSq SINE Alu 1 297 -16 354 23 0 0 chr1 52036975 52037018 -230156646 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 3131 194 45 30 chr1 52037018 52037477 -230156187 + MER82 DNA MER2_type 177 653 0 695 252 103 29 chr1 52037477 52037593 -230156071 - MIR SINE MIR -114 148 3 220 280 0 0 chr1 52037590 52037640 -230156024 - L2 LINE L2 0 3272 3223 * 2280 96 10 0 chr1 52037700 52037991 -230155673 + AluSx SINE Alu 3 296 -16 202 337 11 0 chr1 52037995 52038084 -230155580 + CT-rich Low_complexity Low_complexity 3 92 0 845 237 33 19 chr1 52038341 52038556 -230155108 + MIR SINE MIR 1 218 -44 1667 171 49 0 chr1 52038667 52038954 -230154710 + AluJo SINE Alu 1 301 -11 271 292 8 50 chr1 52039099 52039219 -230154445 - MIR SINE MIR -128 134 20 252 254 28 0 chr1 52039385 52039456 -230154208 + GA-rich Low_complexity Low_complexity 6 78 0 321 47 0 0 chr1 52039551 52039587 -230154077 + (TG)n Simple_repeat Simple_repeat 1 79 0 321 47 0 0 chr1 52039587 52039630 -230154034 + (TG)n Simple_repeat Simple_repeat 1 43 0 410 295 198 14 chr1 52041238 52041455 -230152209 - L2 LINE L2 -2 3270 3014 2153 255 58 71 chr1 52041867 52042204 -230151460 + MER115 DNA AcHobo 9 349 -344 1775 172 50 62 chr1 52042204 52042641 -230151023 + MSTB1 LTR MaLR 1 432 0 2153 255 58 71 chr1 52042641 52042810 -230150854 + MER115 DNA AcHobo 349 519 -174 2328 105 7 0 chr1 52042810 52043114 -230150550 - AluSp SINE Alu -7 306 1 2153 255 58 71 chr1 52043114 52043174 -230150490 + MER115 DNA AcHobo 519 578 -115 2336 102 0 0 chr1 52043174 52043469 -230150195 - AluSc SINE Alu -14 295 1 2153 255 58 71 chr1 52043469 52043594 -230150070 + MER115 DNA AcHobo 578 693 0 1540 107 113 47 chr1 52043978 52044175 -230149489 + L1MA4A LINE L1 5965 6192 -111 1436 156 12 127 chr1 52044175 52044514 -230149150 + AluJb SINE Alu 1 300 -12 1540 107 113 47 chr1 52044514 52044634 -230149030 + L1MA4A LINE L1 6192 6303 0 184 313 122 59 chr1 52045020 52045230 -230148434 + L2 LINE L2 2658 2892 -422 2724 45 0 0 chr1 52045230 52045541 -230148123 - AluY SINE Alu 0 311 1 184 313 122 59 chr1 52045541 52045618 -230148046 + L2 LINE L2 2892 2963 -351 2302 74 3 3 chr1 52046387 52046703 -230146961 + AluSx SINE Alu 1 316 0 1668 186 21 117 chr1 52046732 52046798 -230146866 - MLT1C LTR MaLR 0 467 396 1979 155 7 3 chr1 52046798 52047107 -230146557 + AluJo SINE Alu 1 310 -2 1668 186 21 117 chr1 52047107 52047552 -230146112 - MLT1C LTR MaLR -71 396 5 1807 127 3 53 chr1 52047670 52047969 -230145695 + AluJo SINE Alu 6 289 -23 2312 105 0 3 chr1 52048350 52048656 -230145008 + AluSq SINE Alu 1 305 -8 1795 149 14 3 chr1 52049290 52049578 -230144086 - AluJo SINE Alu -21 291 1 211 339 0 0 chr1 52050148 52050210 -230143454 - L2 LINE L2 -2 3270 3209 279 307 112 88 chr1 52050507 52050758 -230142906 + L2 LINE L2 3016 3272 0 568 267 24 7 chr1 52050768 52050962 -230142702 + MIR3 SINE MIR 3 198 -63 2310 104 0 0 chr1 52051909 52052208 -230141456 - AluSg SINE Alu -11 299 1 209 224 41 0 chr1 52054715 52054764 -230138900 + CT-rich Low_complexity Low_complexity 2 52 0 188 65 0 32 chr1 52056311 52056342 -230137322 + (TGGGGG)n Simple_repeat Simple_repeat 5 34 0 224 329 12 0 chr1 52058325 52058407 -230135257 + L2 LINE L2 2571 2653 -661 387 0 0 0 chr1 52058511 52058554 -230135110 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2182 108 34 0 chr1 52058860 52059157 -230134507 - AluSx SINE Alu -5 307 1 1926 159 0 7 chr1 52059495 52059803 -230133861 - AluSx SINE Alu -6 306 1 530 225 29 29 chr1 52060094 52060232 -230133432 + FLAM_C SINE Alu 2 139 -4 1926 151 0 26 chr1 52060599 52060904 -230132760 - AluJb SINE Alu -15 297 1 738 125 56 12 chr1 52060999 52061159 -230132505 - Charlie1b DNA MER1_type -1 522 356 540 126 0 11 chr1 52061176 52061263 -230132401 - FLAM_A SINE Alu -17 125 40 1294 198 55 52 chr1 52061285 52061404 -230132260 - Charlie1b DNA MER1_type -2416 345 228 2200 121 3 0 chr1 52061404 52061701 -230131963 - AluSq SINE Alu -15 298 1 1294 198 55 52 chr1 52061701 52061897 -230131767 - Charlie1b DNA MER1_type -2533 228 26 2491 73 0 3 chr1 52061897 52062200 -230131464 + AluY SINE Alu 1 302 -9 1294 198 55 52 chr1 52062200 52062226 -230131438 - Charlie1b DNA MER1_type -2735 26 2 29 0 0 0 chr1 52062821 52062850 -230130814 + AT_rich Low_complexity Low_complexity 1 29 0 2182 106 0 7 chr1 52062850 52063142 -230130522 - AluSx SINE Alu -22 290 1 2403 86 3 0 chr1 52063142 52063443 -230130221 - AluSp SINE Alu -11 302 1 279 312 200 10 chr1 52063593 52063798 -230129866 + MIR SINE MIR 8 251 -11 533 225 197 19 chr1 52064098 52064311 -230129353 - MIR SINE MIR 0 262 12 859 159 135 0 chr1 52064866 52065029 -230128635 - AluJ SINE Alu -8 304 120 2343 79 7 0 chr1 52065291 52065581 -230128083 + AluSx SINE Alu 1 292 -20 836 170 151 0 chr1 52065853 52066012 -230127652 - AluJ SINE Alu -1 311 129 33 25 0 0 chr1 52066277 52066317 -230127347 + AT_rich Low_complexity Low_complexity 1 40 0 830 155 0 16 chr1 52066317 52066446 -230127218 - AluJ SINE Alu -185 127 1 762 245 157 50 chr1 52066752 52067135 -230126529 - MLT1L LTR MaLR -13 602 179 2327 82 10 0 chr1 52067372 52067663 -230126001 - AluSc SINE Alu -15 294 1 1605 132 0 0 chr1 52067965 52068185 -230125479 + AluJb SINE Alu 85 304 -8 564 222 26 0 chr1 52068202 52068319 -230125345 + FLAM_A SINE Alu 12 131 -11 797 289 37 0 chr1 52068419 52068661 -230125003 + MIR SINE MIR 2 252 -10 1184 234 138 53 chr1 52068677 52069103 -230124561 - L2 LINE L2 0 3313 2925 2358 103 0 0 chr1 52069103 52069404 -230124260 + AluSx SINE Alu 1 301 -11 1184 234 138 53 chr1 52069404 52069699 -230123965 - L2 LINE L2 -388 2925 2535 1464 188 20 40 chr1 52069868 52070171 -230123493 - AluJo SINE Alu -5 297 1 1208 166 5 0 chr1 52070183 52070376 -230123288 - AluJb SINE Alu 0 312 119 1880 171 7 0 chr1 52070516 52070808 -230122856 - AluJo SINE Alu -18 294 1 362 264 181 31 chr1 52071043 52071236 -230122428 + MIR SINE MIR 4 225 -37 31 0 0 0 chr1 52071248 52071279 -230122385 + AT_rich Low_complexity Low_complexity 1 31 0 1123 66 7 0 chr1 52071284 52071421 -230122243 - AluSg/x SINE Alu -16 294 157 1609 176 0 28 chr1 52071440 52071730 -230121934 - AluJo SINE Alu -30 282 1 513 83 0 0 chr1 52072434 52072506 -230121158 - MER53 DNA DNA -116 73 2 458 291 137 64 chr1 52072600 52072979 -230120685 - MLT1K LTR MaLR -10 578 161 868 206 5 78 chr1 52072979 52073043 -230120621 - MER5A DNA MER1_type 0 189 122 1778 154 16 36 chr1 52073043 52073348 -230120316 + AluJb SINE Alu 1 299 -13 868 206 5 78 chr1 52073348 52073487 -230120177 - MER5A DNA MER1_type -67 122 1 458 291 137 64 chr1 52073487 52073544 -230120120 - MLT1K LTR MaLR -427 161 110 508 315 42 38 chr1 52073608 52073821 -230119843 + MLT1K LTR MaLR 4 217 -371 415 312 14 28 chr1 52074077 52074218 -230119446 + L2 LINE L2 3172 3310 -3 1789 147 41 10 chr1 52074364 52074656 -230119008 + AluJo SINE Alu 1 301 -11 323 355 165 16 chr1 52074660 52075085 -230118579 - L2 LINE L2 -452 2862 2375 410 309 161 25 chr1 52075417 52075770 -230117894 + L1MC4a LINE L1 5530 5930 -1878 394 245 135 20 chr1 52075859 52076059 -230117605 - L2 LINE L2 -64 3249 3027 2034 127 4 0 chr1 52076221 52076496 -230117168 - AluSx SINE Alu -22 290 15 21 36 0 0 chr1 52076728 52076756 -230116908 + AT_rich Low_complexity Low_complexity 1 28 0 187 256 0 0 chr1 52076802 52076845 -230116819 + L2 LINE L2 3221 3263 -9 415 300 58 106 chr1 52077234 52077532 -230116132 - L2 LINE L2 -8 3264 3005 1978 139 0 32 chr1 52077532 52077842 -230115822 + AluSx SINE Alu 1 300 -12 415 300 58 106 chr1 52077842 52078082 -230115582 - L2 LINE L2 -267 3005 2755 303 306 113 53 chr1 52078127 52078172 -230115492 - L2 LINE L2 -1234 2080 2039 2163 110 7 3 chr1 52078172 52078472 -230115192 + AluSg SINE Alu 1 301 -9 303 306 113 53 chr1 52078472 52078769 -230114895 - L2 LINE L2 -1275 2039 1708 2540 62 0 13 chr1 52078769 52079075 -230114589 - AluY SINE Alu -9 302 1 303 306 113 53 chr1 52079075 52079129 -230114535 - L2 LINE L2 -1606 1708 1659 228 296 76 8 chr1 52079667 52079799 -230113865 + L1ME LINE L1 5745 5885 -236 223 281 156 0 chr1 52079925 52080021 -230113643 - MIR SINE MIR -41 167 57 588 95 0 24 chr1 52080367 52080475 -230113189 - AluSg/x SINE Alu 0 312 206 1924 97 42 48 chr1 52080576 52080865 -230112799 - AluSx SINE Alu -11 301 15 2096 92 60 0 chr1 52080892 52081174 -230112490 + AluSp SINE Alu 1 299 -14 1608 187 3 11 chr1 52081547 52081854 -230111810 + AluJb SINE Alu 1 305 0 1775 127 3 90 chr1 52082097 52082419 -230111245 - AluSq SINE Alu -19 294 1 2092 96 11 18 chr1 52082430 52082731 -230110933 - AluSg SINE Alu 0 299 1 2039 118 20 10 chr1 52083008 52083312 -230110352 - AluSx SINE Alu -5 307 1 250 289 44 26 chr1 52083582 52083696 -230109968 + L1ME3A LINE L1 3422 3537 -2609 2108 133 3 10 chr1 52083733 52084034 -230109630 + AluSx SINE Alu 3 301 -11 2392 81 3 3 chr1 52084065 52084361 -230109303 + AluSg SINE Alu 1 296 -14 1605 275 64 62 chr1 52084365 52084421 -230109243 - MER115 DNA AcHobo -120 573 519 2342 102 7 0 chr1 52084421 52084725 -230108939 + AluSp SINE Alu 1 306 -7 1605 275 64 62 chr1 52084725 52084894 -230108770 - MER115 DNA AcHobo -174 519 352 1785 170 50 60 chr1 52084894 52085330 -230108334 - MSTB1 LTR MaLR 0 432 1 1605 275 64 62 chr1 52085330 52085667 -230107997 - MER115 DNA AcHobo -341 352 9 306 197 49 0 chr1 52086090 52086151 -230107513 - LTR67 LTR ERVL -490 67 4 621 0 0 0 chr1 52086263 52086332 -230107332 + (CA)n Simple_repeat Simple_repeat 2 70 0 2151 108 16 10 chr1 52086674 52086981 -230106683 - AluSx SINE Alu -3 309 1 2218 78 13 26 chr1 52086991 52087298 -230106366 - AluY SINE Alu -8 303 1 227 276 17 0 chr1 52087723 52087781 -230105883 + PABL_A LTR ERV1 353 411 -249 1126 251 195 24 chr1 52087804 52088230 -230105434 - MLT1K LTR MaLR -1 587 89 1007 125 0 0 chr1 52088330 52088490 -230105174 + AluSg/x SINE Alu 144 303 0 1841 125 39 4 chr1 52088503 52088783 -230104881 - AluSq SINE Alu -23 290 1 3365 138 36 62 chr1 52088783 52089474 -230104190 - L1MB2 LINE L1 -41 6130 5458 256 254 61 9 chr1 52089471 52089585 -230104079 + L1ME3A LINE L1 3517 3636 -2510 * 420 87 0 0 chr1 52089726 52089795 -230103869 - L1MB8 LINE L1 0 6178 6110 2671 26 7 3 chr1 52089795 52090099 -230103565 + AluY SINE Alu 1 305 -6 1858 181 88 7 chr1 52090136 52090544 -230103120 - L1MB4 LINE L1 0 6180 5740 2111 100 3 44 chr1 52090544 52090865 -230102799 - AluSc SINE Alu 0 309 2 1928 139 49 0 chr1 52090887 52091174 -230102490 - AluSg SINE Alu -9 301 1 799 264 169 47 chr1 52091248 52092545 -230101119 + L1ME3A LINE L1 4418 5881 -289 2659 158 26 28 chr1 52092920 52093080 -230100584 - L1MB7 LINE L1 -24 6160 6001 1720 181 17 3 chr1 52093080 52093372 -230100292 + AluJo SINE Alu 1 296 -16 2659 158 26 28 chr1 52093372 52093403 -230100261 - L1MB7 LINE L1 -183 6001 5678 1440 241 142 9 chr1 52093403 52093939 -230099725 - L1MD2 LINE L1 -379 5980 5374 1318 203 72 37 chr1 52093922 52094172 -230099492 - L1MD2 LINE L1 -1744 4402 4127 * 2452 76 0 3 chr1 52094172 52094474 -230099190 - AluSq SINE Alu -12 301 1 1318 203 72 37 chr1 52094474 52094682 -230098982 - L1MD2 LINE L1 -2019 4127 3928 769 182 8 0 chr1 52094684 52094816 -230098848 - AluJb SINE Alu -177 135 3 1329 166 12 55 chr1 52094818 52095161 -230098503 - L1MD2 LINE L1 -2205 3941 3614 1039 133 0 0 chr1 52095210 52095360 -230098304 - AluSx SINE Alu -1 309 160 606 155 19 0 chr1 52095360 52095463 -230098201 - AluSx SINE Alu -208 105 1 211 213 254 33 chr1 52095665 52095787 -230097877 - MIR3 SINE MIR 0 208 60 832 168 0 0 chr1 52095997 52096128 -230097536 + FLAM_C SINE Alu 2 132 -1 4259 74 21 43 chr1 52096402 52097034 -230096630 - L1PA11 LINE L1 -5 6169 5552 1378 157 0 0 chr1 52097999 52098209 -230095455 - AluJo SINE Alu -17 295 86 1604 129 133 11 chr1 52098209 52098473 -230095191 - AluSg1 SINE Alu -13 296 1 272 316 124 53 chr1 52098974 52099418 -230094246 - L2 LINE L2 -1969 1345 862 2232 78 0 3 chr1 52099418 52099729 -230093935 + AluSg SINE Alu 1 310 0 272 316 124 53 chr1 52099729 52099758 -230093906 - L2 LINE L2 -2452 862 837 318 330 8 34 chr1 52099759 52099877 -230093787 + MER5B DNA MER1_type 3 117 -61 356 207 0 0 chr1 52099906 52099988 -230093676 - L1MC3 LINE L1 -1622 6163 6082 1194 191 71 54 chr1 52100034 52100370 -230093294 - MER2 DNA MER2_type -2 343 2 390 145 0 0 chr1 52100507 52100569 -230093095 - MER58B DNA MER1_type -13 328 267 276 30 0 0 chr1 52100580 52100613 -230093051 + (TG)n Simple_repeat Simple_repeat 2 34 0 2367 109 0 0 chr1 52100640 52100942 -230092722 + AluSx SINE Alu 1 302 -10 747 165 0 23 chr1 52100950 52101083 -230092581 + FLAM_A SINE Alu 1 130 -3 1351 201 76 46 chr1 52101145 52101448 -230092216 + MER63 DNA MER1_type 653 973 -88 1977 117 7 11 chr1 52101448 52101768 -230091896 + AluSg SINE Alu 1 319 0 1351 201 76 46 chr1 52101768 52101857 -230091807 + MER63 DNA MER1_type 973 1058 -3 204 295 128 39 chr1 52101858 52101936 -230091728 - MIR SINE MIR -80 128 44 3261 229 122 37 chr1 52101937 52102346 -230091318 - HAL1 LINE L1 0 2507 2134 2343 103 0 0 chr1 52102346 52102647 -230091017 - AluY SINE Alu -10 301 1 3261 229 122 37 chr1 52102647 52103765 -230089899 - HAL1 LINE L1 -373 2134 850 238 94 19 19 chr1 52103773 52103826 -230089838 - L1MB3 LINE L1 -3 6180 6128 806 196 0 0 chr1 52103845 52103978 -230089686 - FLAM_C SINE Alu -10 133 1 1617 150 13 13 chr1 52103980 52104287 -230089377 - L1MB3 LINE L1 -43 6140 5834 432 256 58 95 chr1 52104271 52104348 -230089316 - HAL1 LINE L1 -1706 801 723 * 860 128 8 15 chr1 52104348 52104481 -230089183 + FLAM_C SINE Alu 2 133 0 432 256 58 95 chr1 52104481 52104750 -230088914 - HAL1 LINE L1 -1784 723 468 2224 65 3 3 chr1 52104804 52105096 -230088568 - L1PA5 LINE L1 -2 6152 5861 227 0 0 0 chr1 52105096 52105123 -230088541 + L1PA5 LINE L1 5830 5856 -298 471 319 16 28 chr1 52105123 52105371 -230088293 - HAL1 LINE L1 -2019 488 244 2022 107 7 0 chr1 52105372 52105642 -230088022 - AluSx SINE Alu -19 293 22 810 188 0 0 chr1 52105643 52105771 -230087893 - FAM SINE Alu -57 128 1 753 141 8 8 chr1 52106040 52106161 -230087503 + FLAM_C SINE Alu 1 121 -22 229 287 119 50 chr1 52106699 52106800 -230086864 + L2 LINE L2 3192 3299 -14 4513 151 47 34 chr1 52107653 52108974 -230084690 - L1MB8 LINE L1 -9 6169 4845 2181 103 3 44 chr1 52108980 52109300 -230084364 - AluSx SINE Alu -5 307 1 2406 225 129 22 chr1 52109435 52110060 -230083604 - L1MC4 LINE L1 -95 7713 7156 225 0 0 0 chr1 52110060 52110085 -230083579 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2406 225 129 22 chr1 52110085 52110428 -230083236 - L1MC4 LINE L1 -652 7156 6851 1561 150 112 38 chr1 52110428 52110742 -230082922 - MER1B DNA MER1_type 0 337 1 2406 225 129 22 chr1 52110742 52110873 -230082791 - L1MC4 LINE L1 -957 6851 6535 581 196 32 2 chr1 52110880 52111021 -230082643 - L1MA9 LINE L1 -82 6218 6066 798 179 46 20 chr1 52111523 52111674 -230081990 + FRAM SINE Alu 1 155 -11 2025 116 3 19 chr1 52111721 52112032 -230081632 + AluSx SINE Alu 1 306 -6 2301 109 0 0 chr1 52112120 52112414 -230081250 - AluSx SINE Alu -18 294 1 278 298 18 53 chr1 52112582 52112696 -230080968 - MER5A DNA MER1_type -76 113 4 2505 138 56 26 chr1 52113006 52113507 -230080157 - L1MB3 LINE L1 -80 6103 5588 2057 118 3 17 chr1 52113532 52113829 -230079835 - AluSx SINE Alu -19 293 1 909 213 6 11 chr1 52115226 52115409 -230078255 - MIR SINE MIR -44 218 37 631 231 311 14 chr1 52115592 52115878 -230077786 + L2 LINE L2 1839 2209 -1105 2829 126 87 45 chr1 52115882 52116414 -230077250 + MLT2B3 LTR ERVL 1 554 0 1890 142 7 26 chr1 52116449 52116751 -230076913 - AluJo SINE Alu -16 296 1 6975 205 58 23 chr1 52116752 52117766 -230075898 + ERVL-B3 LTR ERVL 24 1002 -4762 2516 49 10 3 chr1 52117766 52118073 -230075591 - AluY SINE Alu -2 309 1 6975 205 58 23 chr1 52118073 52118147 -230075517 + ERVL-B3 LTR ERVL 1002 1072 -4692 2109 97 3 52 chr1 52118147 52118456 -230075208 + AluSg SINE Alu 1 294 -16 6975 205 58 23 chr1 52118456 52118932 -230074732 + ERVL-B3 LTR ERVL 1072 1643 -4121 318 311 48 10 chr1 52118982 52119085 -230074579 + L2 LINE L2 3180 3286 -27 186 71 0 0 chr1 52119101 52119129 -230074535 + (TA)n Simple_repeat Simple_repeat 2 29 0 1475 139 77 29 chr1 52119134 52119408 -230074256 - AluJo SINE Alu -25 287 1 431 148 12 0 chr1 52119483 52119564 -230074100 - L1MB3 LINE L1 -353 5830 5749 180 345 73 0 chr1 52119593 52119648 -230074016 + L2 LINE L2 3252 3310 -3 185 333 0 0 chr1 52119680 52119728 -230073936 - L2 LINE L2 -221 3051 3004 204 314 76 43 chr1 52119982 52120192 -230073472 - L2 LINE L2 -229 3043 2827 234 0 0 0 chr1 52120316 52120342 -230073322 + (TC)n Simple_repeat Simple_repeat 2 27 0 2331 86 10 7 chr1 52120359 52120663 -230073001 - AluSx SINE Alu 0 312 8 23 0 0 0 chr1 52120811 52120834 -230072830 + AT_rich Low_complexity Low_complexity 1 23 0 298 226 65 32 chr1 52121171 52121264 -230072400 - L2 LINE L2 -8 3264 3169 * 5798 270 74 44 chr1 52121247 52122548 -230071116 + L2 LINE L2 988 2391 -922 2186 117 3 0 chr1 52122548 52122846 -230070818 - AluSx SINE Alu -13 299 1 5798 270 74 44 chr1 52122846 52123798 -230069866 + L2 LINE L2 2391 3313 0 279 0 0 0 chr1 52124805 52124836 -230068828 + (TA)n Simple_repeat Simple_repeat 2 32 0 1417 175 126 0 chr1 52125287 52125550 -230068114 - AluJo SINE Alu -4 298 3 1081 235 127 61 chr1 52126212 52126684 -230066980 - MLT1J LTR MaLR 0 511 9 753 221 133 5 chr1 52127132 52127517 -230066147 - L1M4 LINE L1 -2963 3183 2750 2327 83 0 0 chr1 52127542 52127831 -230065833 - AluSx SINE Alu -23 289 1 2132 137 0 31 chr1 52127838 52128160 -230065504 - AluSx SINE Alu 0 312 1 205 254 0 36 chr1 52128875 52128930 -230064734 + L2 LINE L2 2994 3046 -226 486 227 10 0 chr1 52129140 52129237 -230064427 + FLAM_A SINE Alu 1 98 -44 2340 97 3 0 chr1 52129502 52129802 -230063862 - AluSx SINE Alu -11 301 1 599 340 72 25 chr1 52130312 52130630 -230063034 + L2 LINE L2 2936 3268 -4 381 314 190 43 chr1 52130634 52131102 -230062562 - L2 LINE L2 -622 2692 2156 201 314 35 12 chr1 52131105 52131191 -230062473 - L2 LINE L2 -1391 1923 1836 434 274 232 0 chr1 52131420 52131584 -230062080 + MIR SINE MIR 49 250 -12 1955 111 18 7 chr1 52131588 52131890 -230061774 - AluSq SINE Alu 0 305 1 2334 98 0 0 chr1 52131973 52132278 -230061386 - AluSx SINE Alu -7 305 1 1487 143 90 19 chr1 52132280 52132546 -230061118 - AluJo SINE Alu -10 302 18 840 251 26 67 chr1 52132669 52132793 -230060871 - MIR SINE MIR -4 258 130 1971 134 11 62 chr1 52132793 52133167 -230060497 - THE1A LTR MaLR 0 355 1 12075 80 12 0 chr1 52133167 52134728 -230058936 - THE1B-int LTR MaLR 0 1580 1 2003 137 16 46 chr1 52134731 52135103 -230058561 - THE1B LTR MaLR -3 361 1 840 251 26 67 chr1 52135103 52135240 -230058424 - MIR SINE MIR -133 129 3 916 283 102 55 chr1 52135273 52135726 -230057938 - MLT1K LTR MaLR -113 475 2 2353 101 0 0 chr1 52135747 52136043 -230057621 + AluSx SINE Alu 3 298 -14 2272 96 3 10 chr1 52136686 52136989 -230056675 + AluSx SINE Alu 1 301 -11 1483 83 34 5 chr1 52136989 52137191 -230056473 + AluSq SINE Alu 96 305 -8 2196 142 0 7 chr1 52137674 52137984 -230055680 - AluSx SINE Alu -4 308 1 2059 152 28 25 chr1 52138335 52138696 -230054968 - MLT1A1 LTR MaLR 0 365 4 255 172 23 35 chr1 52138743 52138856 -230054808 + (CAA)n Simple_repeat Simple_repeat 1 111 0 816 215 56 0 chr1 52139380 52139613 -230054051 + L1ME3 LINE L1 5910 6155 -7 1598 128 50 34 chr1 52139779 52139933 -230053731 + MER44D DNA MER2_type 13 163 -2328 2189 62 0 11 chr1 52139933 52140205 -230053459 - AluY SINE Alu -8 303 35 1598 128 50 34 chr1 52140205 52140370 -230053294 + MER44D DNA MER2_type 163 607 -2 2401 96 0 0 chr1 52140534 52140835 -230052829 + AluSx SINE Alu 1 301 -11 2623 176 40 13 chr1 52140874 52141426 -230052238 - L1MB8 LINE L1 -3 6175 5609 240 111 0 0 chr1 52141435 52141471 -230052193 - L1P5 LINE L1 -583 5568 5533 2382 97 0 0 chr1 52141513 52141812 -230051852 - AluSq SINE Alu -14 299 1 2382 92 0 3 chr1 52141954 52142257 -230051407 - AluSq SINE Alu -11 302 1 25 0 0 0 chr1 52142266 52142291 -230051373 + AT_rich Low_complexity Low_complexity 1 25 0 487 269 63 121 chr1 52143866 52144014 -230049650 - L2 LINE L2 -11 3302 3147 2181 121 0 0 chr1 52144014 52144303 -230049361 + AluSx SINE Alu 1 289 -23 487 269 63 121 chr1 52144303 52144518 -230049146 - L2 LINE L2 -166 3147 2960 2367 119 0 0 chr1 52144627 52144939 -230048725 - AluSx SINE Alu 0 312 1 243 0 0 0 chr1 52146448 52146475 -230047189 + (A)n Simple_repeat Simple_repeat 1 27 0 951 191 79 23 chr1 52146817 52147032 -230046632 + MIR SINE MIR 34 260 -2 2008 157 7 0 chr1 52147719 52148024 -230045640 + AluJo SINE Alu 1 307 -5 218 329 116 48 chr1 52152619 52152765 -230040899 + L2 LINE L2 2184 2339 -975 2366 92 0 0 chr1 52152775 52153068 -230040596 + AluSx SINE Alu 1 293 -19 342 306 198 33 chr1 52153103 52153528 -230040136 + L2 LINE L2 1428 1922 -1392 299 327 207 18 chr1 52153651 52154052 -230039612 + L2 LINE L2 2240 2716 -598 304 295 194 40 chr1 52154269 52154496 -230039168 + L2 LINE L2 2511 2772 -542 254 278 206 24 chr1 52155470 52155596 -230038068 + MIR3 SINE MIR 36 184 -24 * 282 219 93 125 chr1 52155575 52155927 -230037737 + L2 LINE L2 2804 3235 -37 189 0 0 0 chr1 52157565 52157586 -230036078 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 2247 98 0 60 chr1 52158638 52158803 -230034861 - AluSx SINE Alu -14 298 159 2057 120 28 3 chr1 52158803 52159094 -230034570 - AluSx SINE Alu -12 300 3 2247 98 0 60 chr1 52159094 52159245 -230034419 - AluSx SINE Alu -153 159 1 649 291 81 5 chr1 52160112 52160335 -230033329 - MIR SINE MIR -21 241 2 674 115 135 0 chr1 52164025 52164129 -230029535 - FLAM_C SINE Alu -23 120 3 319 280 152 24 chr1 52164798 52165009 -230028655 + L2 LINE L2 2158 2395 -919 358 326 36 45 chr1 52165028 52165249 -230028415 - MIR SINE MIR -30 232 14 393 297 75 70 chr1 52165467 52165796 -230027868 + L2 LINE L2 2666 2997 -275 188 274 253 0 chr1 52165825 52165920 -230027744 + L2 LINE L2 3137 3255 -17 2301 105 28 39 chr1 52166533 52166698 -230026966 + THE1B LTR MaLR 1 166 -198 2351 114 0 0 chr1 52166698 52167004 -230026660 - AluSx SINE Alu -6 306 1 2301 105 28 39 chr1 52167004 52167199 -230026465 + THE1B LTR MaLR 166 357 -7 281 89 22 0 chr1 52167290 52167335 -230026329 - MADE1 DNA Mariner -34 46 1 224 211 0 0 chr1 52170505 52170543 -230023121 - L2 LINE L2 -14 3258 3221 198 286 0 0 chr1 52170574 52170623 -230023041 - L2 LINE L2 -14 3258 3210 * 285 321 75 22 chr1 52170616 52170750 -230022914 - MIR3 SINE MIR -43 165 25 1067 247 35 32 chr1 52171138 52171507 -230022157 + L1ME1 LINE L1 5791 6160 -6 420 257 53 136 chr1 52171694 52172033 -230021631 + L2 LINE L2 2961 3271 -1 499 254 30 15 chr1 52172807 52172941 -230020723 - L2 LINE L2 -580 2734 2599 642 308 117 34 chr1 52173662 52174140 -230019524 - L2 LINE L2 -998 2316 1799 23888 24 8 2 chr1 52174141 52177449 -230016215 - L1PA3 LINE L1 -431 5724 2405 3717 21 0 0 chr1 52177449 52177866 -230015798 + L1PA3 LINE L1 5734 6155 0 22 0 0 0 chr1 52178026 52178048 -230015616 + AT_rich Low_complexity Low_complexity 1 22 0 333 281 44 37 chr1 52178282 52178335 -230015329 + L2 LINE L2 3136 3187 -85 2412 101 3 0 chr1 52178335 52178641 -230015023 - AluSp SINE Alu -6 307 1 333 281 44 37 chr1 52178641 52178722 -230014942 + L2 LINE L2 3187 3271 -1 2468 60 3 3 chr1 52179790 52180091 -230013573 - AluY SINE Alu -10 301 1 320 225 11 45 chr1 52181274 52181363 -230012301 - MLT1J LTR MaLR -50 461 376 1856 160 3 3 chr1 52181519 52181806 -230011858 + AluJo SINE Alu 5 291 -21 779 265 84 61 chr1 52181894 52182269 -230011395 + L2 LINE L2 2817 3205 -108 1830 165 3 22 chr1 52182269 52182585 -230011079 + AluJo SINE Alu 3 312 0 779 265 84 61 chr1 52182585 52182650 -230011014 + L2 LINE L2 3205 3267 -46 1929 158 0 46 chr1 52182668 52182991 -230010673 - AluJb SINE Alu -4 308 1 24 0 0 0 chr1 52182991 52183015 -230010649 + AT_rich Low_complexity Low_complexity 1 24 0 976 163 181 0 chr1 52183027 52183248 -230010416 + MER58B DNA MER1_type 81 341 0 1688 84 9 5 chr1 52183492 52183707 -230009957 + AluSg/x SINE Alu 84 299 -11 1734 189 3 3 chr1 52184366 52184662 -230009002 - AluJb SINE Alu -16 296 1 308 293 158 50 chr1 52185230 52185822 -230007842 + L2 LINE L2 2505 3162 -110 2207 107 0 3 chr1 52186034 52186358 -230007306 + AluSg SINE Alu 1 310 0 342 261 60 8 chr1 52186373 52186507 -230007157 + L2 LINE L2 3069 3209 -104 277 183 155 0 chr1 52186490 52186561 -230007103 - MIR SINE MIR -152 110 29 * 241 303 57 33 chr1 52186577 52186699 -230006965 + L3 LINE CR1 1270 1394 -183 267 31 0 0 chr1 52186964 52186996 -230006668 + (CA)n Simple_repeat Simple_repeat 1 32 0 206 406 77 12 chr1 52187432 52187602 -230006062 + L3 LINE CR1 1396 1576 -1 821 215 179 57 chr1 52187660 52188079 -230005585 - MLT1K LTR MaLR -2 474 5 756 234 32 91 chr1 52188316 52188338 -230005326 + L1ME LINE L1 5452 5474 -647 1872 142 24 10 chr1 52188338 52188626 -230005038 - AluJo SINE Alu -20 292 1 756 234 32 91 chr1 52188626 52188817 -230004847 + L1ME LINE L1 5474 5675 -446 986 223 0 0 chr1 52188817 52188992 -230004672 + FAM SINE Alu 1 175 0 756 234 32 91 chr1 52188992 52189039 -230004625 + L1ME LINE L1 5675 5723 -398 2633 50 0 0 chr1 52189039 52189337 -230004327 + AluY SINE Alu 1 298 -13 756 234 32 91 chr1 52189337 52189416 -230004248 + L1ME LINE L1 5723 5773 -348 1814 130 52 4 chr1 52189440 52189710 -230003954 + AluJb SINE Alu 11 293 -19 2188 141 0 3 chr1 52189847 52190151 -230003513 - AluSx SINE Alu -9 303 1 259 121 0 17 chr1 52190184 52190242 -230003422 + L1ME4a LINE L1 6047 6103 -18 212 191 0 0 chr1 52190818 52190860 -230002804 + L2 LINE L2 3016 3057 -215 262 200 40 0 chr1 52191020 52191070 -230002594 + MIR SINE MIR 102 153 -109 536 285 107 14 chr1 52191403 52191694 -230001970 + L2 LINE L2 2342 2659 -655 923 62 0 0 chr1 52191762 52191875 -230001789 + AluSp/q SINE Alu 188 300 -13 1275 166 72 13 chr1 52192073 52192308 -230001356 - AluJo SINE Alu -23 289 41 247 301 32 21 chr1 52192314 52192407 -230001257 + L2 LINE L2 2968 3061 -211 504 233 98 18 chr1 52192463 52192522 -230001142 - MIR SINE MIR -40 222 169 2387 93 6 3 chr1 52192522 52192833 -230000831 - AluSp SINE Alu -1 312 1 504 233 98 18 chr1 52192833 52192936 -230000728 - MIR SINE MIR -93 169 47 2691 32 3 13 chr1 52192987 52193301 -230000363 - AluY SINE Alu 0 311 1 304 28 0 0 chr1 52193433 52193469 -230000195 + (TTTTC)n Simple_repeat Simple_repeat 5 40 0 2072 101 22 0 chr1 52193469 52193745 -229999919 - AluSx SINE Alu -1 317 1 273 331 75 86 chr1 52194944 52195101 -229998563 + L2 LINE L2 2870 3027 -245 2098 124 17 7 chr1 52195101 52195381 -229998283 + AluSx SINE Alu 1 286 -26 188 35 35 0 chr1 52195381 52195410 -229998254 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 273 331 75 86 chr1 52195420 52195646 -229998018 + L2 LINE L2 3027 3249 -23 * 340 304 17 9 chr1 52195642 52195757 -229997907 + MIR3 SINE MIR 82 197 -11 187 318 15 15 chr1 52196335 52196401 -229997263 - L3 LINE CR1 -227 1350 1285 473 341 0 0 chr1 52196401 52196536 -229997128 + MIR SINE MIR 19 153 -109 212 234 0 52 chr1 52196784 52196861 -229996803 - MIR SINE MIR -71 137 64 2286 99 0 0 chr1 52197639 52197948 -229995716 - AluSq SINE Alu 0 309 1 199 288 121 0 chr1 52198310 52198376 -229995288 + L2 LINE L2 3239 3312 -1 2338 95 7 0 chr1 52198691 52198987 -229994677 - AluSx SINE Alu -14 298 1 400 316 57 79 chr1 52199899 52200127 -229993537 + L2 LINE L2 3050 3272 0 228 273 128 0 chr1 52200618 52200713 -229992951 + MIR SINE MIR 43 143 -65 2227 106 7 0 chr1 52203689 52203981 -229989683 + AluSg SINE Alu 1 294 -16 202 337 11 0 chr1 52203985 52204074 -229989590 + CT-rich Low_complexity Low_complexity 3 92 0 789 237 33 19 chr1 52204331 52204546 -229989118 + MIR SINE MIR 1 218 -44 1667 171 49 0 chr1 52204657 52204944 -229988720 + AluJo SINE Alu 1 301 -11 232 268 0 37 chr1 52205089 52205171 -229988493 - MIR SINE MIR -128 134 56 252 254 28 0 chr1 52205375 52205446 -229988218 + GA-rich Low_complexity Low_complexity 6 78 0 321 47 0 0 chr1 52205541 52205577 -229988087 + (TG)n Simple_repeat Simple_repeat 1 79 0 321 47 0 0 chr1 52205577 52205620 -229988044 + (TG)n Simple_repeat Simple_repeat 1 43 0 361 295 198 14 chr1 52207228 52207445 -229986219 - L2 LINE L2 -2 3270 3014 185 345 191 16 chr1 52207795 52207989 -229985675 - L2 LINE L2 -1054 2260 2033 2132 104 0 0 chr1 52208040 52208308 -229985356 + AluSx SINE Alu 1 268 -44 219 36 0 0 chr1 52208402 52208430 -229985234 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1801 138 21 41 chr1 52208432 52208722 -229984942 - AluJb SINE Alu -23 289 6 2379 86 3 43 chr1 52212091 52212269 -229981395 - AluSq SINE Alu -1 312 151 2524 49 13 3 chr1 52212269 52212574 -229981090 - AluY SINE Alu -3 308 1 2379 86 3 43 chr1 52212574 52212720 -229980944 - AluSq SINE Alu -162 151 1 253 267 42 67 chr1 52212736 52212856 -229980808 - MIR SINE MIR -49 159 43 454 97 0 0 chr1 52213070 52213132 -229980532 - MER58 DNA MER1_type 0 2420 2359 309 180 0 0 chr1 52215791 52215841 -229977823 + MER45A DNA AcHobo 58 107 -71 * 379 50 0 17 chr1 52215839 52215892 -229977772 - AluY SINE Alu -1 299 246 1787 31 0 0 chr1 52215892 52216085 -229977579 - AluY SINE Alu -118 193 1 301 214 57 0 chr1 52216085 52216155 -229977509 + MER45A DNA AcHobo 98 171 -7 707 238 101 44 chr1 52217267 52217375 -229976289 - MIR SINE MIR 0 262 162 2530 73 0 0 chr1 52217375 52217675 -229975989 - AluY SINE Alu -11 300 1 707 238 101 44 chr1 52217675 52217814 -229975850 - MIR SINE MIR -100 162 1 235 214 18 0 chr1 52218787 52218843 -229974821 - MIR SINE MIR -112 150 94 186 239 230 35 chr1 52220783 52220896 -229972768 - MIR SINE MIR -56 206 72 * 1470 246 57 36 chr1 52220892 52221403 -229972261 + L2 LINE L2 2779 3309 -4 190 335 65 80 chr1 52221948 52222211 -229971453 + L2 LINE L2 3014 3272 0 280 244 298 0 chr1 52222264 52222395 -229971269 - MIR SINE MIR -50 212 43 2245 80 0 22 chr1 52224163 52224476 -229969188 - AluY SINE Alu -5 306 1 23 0 0 0 chr1 52224486 52224509 -229969155 + AT_rich Low_complexity Low_complexity 1 23 0 829 144 23 23 chr1 52224509 52224641 -229969023 - AluJo SINE Alu -178 134 3 2197 128 0 7 chr1 52224681 52224985 -229968679 + AluSx SINE Alu 1 302 -10 267 176 65 39 chr1 52224985 52225138 -229968526 + GA-rich Low_complexity Low_complexity 2 158 0 2450 60 10 10 chr1 52225988 52226290 -229967374 - AluSq SINE Alu -11 302 1 301 261 0 14 chr1 52226297 52226366 -229967298 - L1MC4a LINE L1 -1894 5914 5847 368 261 180 9 chr1 52226388 52226610 -229967054 - L1MC4a LINE L1 -2171 5637 5378 1918 134 27 20 chr1 52226613 52226912 -229966752 - AluJb SINE Alu -11 301 1 21 36 0 0 chr1 52226924 52226952 -229966712 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 52226990 52227011 -229966653 + AT_rich Low_complexity Low_complexity 1 21 0 2195 98 6 50 chr1 52227167 52227484 -229966180 - AluSq SINE Alu -10 303 1 557 306 86 5 chr1 52227508 52227717 -229965947 + MIR SINE MIR 2 227 -35 235 245 206 0 chr1 52227749 52227851 -229965813 - L3 LINE CR1 -103 1474 1352 799 249 96 22 chr1 52227854 52228083 -229965581 + MIR SINE MIR 1 246 -16 238 312 54 11 chr1 52228117 52228210 -229965454 - L3 LINE CR1 -232 1345 1249 2220 132 0 0 chr1 52228246 52228550 -229965114 + AluSx SINE Alu 1 304 -8 363 214 0 0 chr1 52228553 52228623 -229965041 - L1M3 LINE L1 -714 5466 5397 1113 70 0 0 chr1 52228982 52229110 -229964554 + AluSq/x SINE Alu 6 133 -179 180 0 0 0 chr1 52229110 52229130 -229964534 + (A)n Simple_repeat Simple_repeat 1 20 0 713 152 228 6 chr1 52229920 52230078 -229963586 - MER66A LTR ERV1 -3 475 283 216 243 57 0 chr1 52230082 52230152 -229963512 - MIR SINE MIR -105 157 84 2218 118 10 0 chr1 52230160 52230465 -229963199 - AluJb SINE Alu -4 308 1 1102 249 36 0 chr1 52230662 52230911 -229962753 + MLT1H LTR MaLR 24 281 -268 447 181 37 21 chr1 52230974 52231075 -229962589 + MLT1H LTR MaLR 425 521 -28 21 0 0 0 chr1 52231078 52231099 -229962565 + AT_rich Low_complexity Low_complexity 1 21 0 829 169 0 0 chr1 52231171 52231295 -229962369 + FLAM_C SINE Alu 1 124 -19 234 370 37 41 chr1 52231510 52231753 -229961911 + L2 LINE L2 3017 3258 -14 * 346 311 122 44 chr1 52231741 52232293 -229961371 - L2 LINE L2 -16 3297 2709 592 328 75 3 chr1 52232454 52232747 -229960917 + L3 LINE CR1 1091 1404 -173 471 293 7 20 chr1 52232797 52232944 -229960720 + MLT1I LTR MaLR 1 145 -264 180 0 0 0 chr1 52232945 52232965 -229960699 + (T)n Simple_repeat Simple_repeat 1 20 0 574 175 49 35 chr1 52233341 52233484 -229960180 - MIR SINE MIR -50 212 68 2085 99 34 17 chr1 52233537 52233696 -229959968 - AluSg SINE Alu -11 299 131 2491 84 0 3 chr1 52233696 52234007 -229959657 - AluY SINE Alu -1 310 1 2085 99 34 17 chr1 52234007 52234141 -229959523 - AluSg SINE Alu -179 131 1 1530 178 7 41 chr1 52234141 52234434 -229959230 - MSTB LTR MaLR -143 283 1 2593 220 36 53 chr1 52234434 52234536 -229959128 - MSTC-int LTR MaLR -1027 708 606 2396 91 0 10 chr1 52234536 52234844 -229958820 - AluY SINE Alu -6 305 1 2593 220 36 53 chr1 52234844 52235110 -229958554 - MSTC-int LTR MaLR -1129 606 337 2115 124 11 0 chr1 52235110 52235422 -229958242 - AluSx SINE Alu 0 315 1 2593 220 36 53 chr1 52235422 52235769 -229957895 - MSTC-int LTR MaLR -1398 337 2 2169 135 6 116 chr1 52235771 52236252 -229957412 - MSTC LTR MaLR 0 428 1 742 106 29 158 chr1 52236256 52236406 -229957258 + L1MA8 LINE L1 5929 6097 -194 2442 94 3 0 chr1 52236406 52236715 -229956949 + AluSp SINE Alu 1 310 -3 742 106 29 158 chr1 52236715 52236729 -229956935 + L1MA8 LINE L1 6097 6111 -180 2218 125 0 10 chr1 52236729 52237042 -229956622 + AluSg SINE Alu 1 310 0 742 106 29 158 chr1 52237042 52237122 -229956542 + L1MA8 LINE L1 6111 6142 -149 686 128 0 146 chr1 52237143 52237307 -229956357 + FRAM SINE Alu 25 164 -12 551 140 140 0 chr1 52237307 52237443 -229956221 + L1MA8 LINE L1 6132 6286 -5 367 252 78 0 chr1 52237451 52237554 -229956110 + L1M4 LINE L1 3185 3295 -2851 2258 118 3 0 chr1 52237555 52237852 -229955812 + AluSp SINE Alu 1 298 -15 1858 182 3 10 chr1 52237853 52238161 -229955503 + AluJb SINE Alu 1 306 -6 635 292 24 32 chr1 52238465 52238723 -229954941 + MIR SINE MIR 1 261 -1 216 265 29 0 chr1 52242681 52242749 -229950915 + GA-rich Low_complexity Low_complexity 1 70 0 283 170 0 0 chr1 52243550 52243597 -229950067 + MER69 DNA AcHobo 1 47 -2479 2563 43 20 0 chr1 52243598 52243898 -229949766 + AluY SINE Alu 1 306 -5 1532 93 31 0 chr1 52243900 52244126 -229949538 + MER41A LTR ERV1 322 554 0 182 306 9 54 chr1 52244136 52244247 -229949417 + L2 LINE L2 2626 2731 -583 273 254 0 0 chr1 52244271 52244338 -229949326 - MER69 DNA AcHobo -12 2514 2448 563 94 0 12 chr1 52244412 52244496 -229949168 - Charlie1 DNA MER1_type -830 1931 1849 1984 100 36 0 chr1 52244496 52244797 -229948867 + AluSq SINE Alu 1 312 -1 1871 139 3 7 chr1 52244797 52245092 -229948572 + AluSx SINE Alu 1 294 -18 413 283 130 0 chr1 52245096 52245234 -229948430 + L1M4 LINE L1 3336 3491 -2655 323 192 77 0 chr1 52245300 52245378 -229948286 - MER112 DNA MER1_type -90 170 87 315 0 0 0 chr1 52245384 52245419 -229948245 + (TG)n Simple_repeat Simple_repeat 2 36 0 2054 127 3 0 chr1 52245439 52245730 -229947934 - AluSx SINE Alu -20 292 1 2151 123 0 0 chr1 52245730 52246023 -229947641 - AluSx SINE Alu -19 293 1 592 241 53 18 chr1 52246391 52246561 -229947103 - MIR SINE MIR -21 241 66 832 102 55 24 chr1 52246738 52246865 -229946799 - FLAM_C SINE Alu -2 131 1 1932 136 14 0 chr1 52246875 52247169 -229946495 - AluSx SINE Alu -14 298 1 240 331 31 23 chr1 52247169 52247290 -229946374 + MIR SINE MIR 22 146 -62 1787 224 113 30 chr1 52247299 52247804 -229945860 - MLT1H LTR MaLR 0 549 3 1526 204 8 79 chr1 52247964 52248007 -229945657 - MLT1A1 LTR MaLR 0 365 321 2043 117 0 3 chr1 52248007 52248289 -229945375 + AluSc SINE Alu 1 283 -26 213 65 0 0 chr1 52248289 52248320 -229945344 + (CCAA)n Simple_repeat Simple_repeat 2 32 0 1526 204 8 79 chr1 52248328 52248677 -229944987 - MLT1A1 LTR MaLR -44 321 1 1084 235 21 8 chr1 52249234 52249472 -229944192 - MIR SINE MIR -6 256 16 517 278 103 68 chr1 52249534 52249786 -229943878 - MIR SINE MIR 0 262 2 183 190 172 17 chr1 52249946 52250004 -229943660 + L2 LINE L2 3202 3268 -4 233 304 25 13 chr1 52250380 52250459 -229943205 - MIR SINE MIR -92 116 37 239 154 19 19 chr1 52250732 52250784 -229942880 - L2 LINE L2 -1 3312 3261 22 35 0 0 chr1 52251168 52251197 -229942467 + AT_rich Low_complexity Low_complexity 1 29 0 327 248 16 58 chr1 52251215 52251275 -229942389 + MIR SINE MIR 96 150 -112 2114 121 7 0 chr1 52251275 52251573 -229942091 - AluSx SINE Alu -12 300 1 327 248 16 58 chr1 52251573 52251633 -229942031 + MIR SINE MIR 150 211 -51 2592 39 0 0 chr1 52252120 52252426 -229941238 - AluY SINE Alu -5 306 1 1889 139 175 47 chr1 52252433 52252920 -229940744 - LTR10A LTR ERV1 0 609 12 1462 245 8 22 chr1 52252929 52253292 -229940372 - LTR10A-int LTR ERV1 -2 6647 6290 * 7297 116 16 0 chr1 52253291 52254454 -229939210 - Harlequin LTR ERV1 -3910 2986 1806 2611 46 3 0 chr1 52254453 52254776 -229938888 - LTR17 LTR ERV1 -456 324 1 * 2251 71 3 0 chr1 52254780 52255076 -229938588 - HERV17 LTR ERV1 -5 8621 6836 22149 51 1 1 chr1 52255090 52257817 -229935847 - HERV17 LTR ERV1 -2609 6017 3291 400 141 0 16 chr1 52257962 52258026 -229935638 - AluJ/FLAM SINE Alu -243 69 7 1250 209 72 22 chr1 52258102 52258380 -229935284 + AluJo SINE Alu 1 292 -10 831 172 0 0 chr1 52258380 52258508 -229935156 + FLAM_C SINE Alu 2 129 -4 2033 111 7 10 chr1 52258525 52258823 -229934841 + AluSx SINE Alu 1 297 -15 860 73 12 38 chr1 52258828 52259067 -229934597 + AluY SINE Alu 35 302 -9 1818 86 12 12 chr1 52259067 52259311 -229934353 + AluSp SINE Alu 1 244 -69 1133 112 85 5 chr1 52259335 52259523 -229934141 + AluSq SINE Alu 3 205 -108 1062 147 6 0 chr1 52259534 52259711 -229933953 + AluSg/x SINE Alu 130 307 -5 2208 107 3 7 chr1 52259736 52260044 -229933620 + AluSq SINE Alu 1 307 -6 1093 212 16 4 chr1 52260045 52260300 -229933364 + L1ME2 LINE L1 5666 5923 -243 1717 137 29 11 chr1 52260680 52260983 -229932681 - AluSx SINE Alu 0 308 1 1727 139 0 87 chr1 52261024 52261356 -229932308 - AluJo SINE Alu -9 303 1 390 322 51 8 chr1 52261364 52261482 -229932182 + L1ME2 LINE L1 6042 6164 0 1742 57 8 28 chr1 52262175 52262422 -229931242 - AluY SINE Alu -69 242 1 306 302 54 8 chr1 52262461 52262590 -229931074 + MIR SINE MIR 52 186 -76 2402 79 3 3 chr1 52262597 52262915 -229930749 - AluYb8 SINE Alu 0 318 1 10891 38 4 1 chr1 52262915 52264248 -229929416 - HERV17 LTR ERV1 -5337 3289 1953 278 143 0 0 chr1 52264236 52264278 -229929386 - HERV17 LTR ERV1 -8583 43 2 * 3029 58 63 0 chr1 52264278 52264676 -229928988 - LTR17 LTR ERV1 0 780 358 507 275 59 85 chr1 52264792 52265564 -229928100 + L1ME LINE L1 529 1319 -4942 2125 116 0 3 chr1 52265592 52265894 -229927770 + AluSg SINE Alu 1 301 -9 251 187 19 0 chr1 52266260 52266324 -229927340 + MIR SINE MIR 96 146 -62 27 29 0 0 chr1 52266324 52266358 -229927306 + AT_rich Low_complexity Low_complexity 1 34 0 796 154 0 0 chr1 52266358 52266475 -229927189 - AluJb SINE Alu -194 118 2 500 266 114 0 chr1 52267086 52267244 -229926420 - MIR SINE MIR -4 258 83 308 249 68 89 chr1 52267838 52267992 -229925672 + MIR3 SINE MIR 21 180 -28 200 373 0 0 chr1 52268061 52268136 -229925528 - MIR SINE MIR -4 258 184 21 89 0 0 chr1 52268592 52268648 -229925016 + GC_rich Low_complexity Low_complexity 1 56 0 43 64 0 0 chr1 52268807 52268885 -229924779 + GC_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr1 52269067 52269088 -229924576 + GC_rich Low_complexity Low_complexity 1 21 0 1900 156 0 3 chr1 52272037 52272338 -229921326 - AluJb SINE Alu -12 300 1 771 284 162 36 chr1 52272356 52273141 -229920523 - L2 LINE L2 0 3313 2422 359 255 132 0 chr1 52273474 52273580 -229920084 + L2 LINE L2 3192 3311 -2 201 208 38 19 chr1 52275370 52275423 -229918241 + G-rich Low_complexity Low_complexity 4 57 0 231 314 111 7 chr1 52277505 52277658 -229916006 - MIR3 SINE MIR 0 208 40 243 290 28 35 chr1 52277827 52277972 -229915692 - L2 LINE L2 -190 3082 2939 494 290 112 0 chr1 52278016 52278185 -229915479 + L3 LINE CR1 1285 1472 -105 1945 148 0 3 chr1 52278514 52278805 -229914859 + AluJb SINE Alu 1 290 -22 207 195 0 0 chr1 52279311 52279352 -229914312 + (CA)n Simple_repeat Simple_repeat 2 42 0 302 314 29 10 chr1 52279642 52279783 -229913881 - MIR SINE MIR -57 205 57 838 165 0 0 chr1 52280129 52280262 -229913402 + FLAM_C SINE Alu 1 133 0 480 264 34 7 chr1 52280274 52280422 -229913242 - MIR SINE MIR 0 262 111 2101 119 0 13 chr1 52280636 52280948 -229912716 + AluSq SINE Alu 1 308 -5 852 161 90 0 chr1 52280962 52281117 -229912547 - MER45A DNA AcHobo -3 175 7 218 259 12 12 chr1 52281552 52281637 -229912027 + (TG)n Simple_repeat Simple_repeat 1 85 0 2115 95 3 3 chr1 52282187 52282481 -229911183 + AluSq SINE Alu 9 302 -11 219 262 179 0 chr1 52282650 52282757 -229910907 - MIR3 SINE MIR -48 160 34 838 187 58 44 chr1 52282872 52283056 -229910608 + MIR SINE MIR 10 199 -63 2078 129 0 0 chr1 52283056 52283365 -229910299 - AluSg SINE Alu -1 309 1 838 187 58 44 chr1 52283365 52283405 -229910259 + MIR SINE MIR 199 237 -25 228 329 134 29 chr1 52283427 52283844 -229909820 + L2 LINE L2 2297 2757 -557 364 351 119 31 chr1 52283872 52284154 -229909510 + L2 LINE L2 2815 3147 -125 2114 99 10 29 chr1 52284154 52284468 -229909196 - AluSx SINE Alu 0 312 5 364 351 119 31 chr1 52284468 52284604 -229909060 + L2 LINE L2 3147 3270 -2 267 299 23 0 chr1 52285340 52285427 -229908237 - L3 LINE CR1 -103 1474 1386 219 200 31 62 chr1 52286418 52286483 -229907181 + L2 LINE L2 432 494 -2820 214 149 0 64 chr1 52286660 52286707 -229906957 - L2 LINE L2 -210 3062 3019 320 161 215 0 chr1 52287754 52287847 -229905817 - MIR3 SINE MIR -15 193 81 2017 114 34 0 chr1 52287847 52288144 -229905520 - AluSx SINE Alu -5 307 1 226 285 26 46 chr1 52288952 52289103 -229904561 + (CAGAGA)n Simple_repeat Simple_repeat 1 148 0 * 271 318 0 32 chr1 52289024 52289178 -229904486 + GA-rich Low_complexity Low_complexity 1 149 0 21 0 0 0 chr1 52289209 52289230 -229904434 + AT_rich Low_complexity Low_complexity 1 21 0 2024 84 30 30 chr1 52292720 52293017 -229900647 + AluSq SINE Alu 1 297 -16 428 301 37 15 chr1 52294146 52294282 -229899382 - MIR SINE MIR -16 246 108 370 287 98 44 chr1 52294280 52294526 -229899138 + MIR SINE MIR 6 262 0 * 506 302 52 21 chr1 52294553 52294745 -229898919 + MIR SINE MIR 45 242 -20 227 213 0 0 chr1 52295248 52295295 -229898369 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 674 243 135 27 chr1 52295310 52295532 -229898132 + MIR SINE MIR 16 261 -1 218 337 0 0 chr1 52295541 52295630 -229898034 + (TTCA)n Simple_repeat Simple_repeat 1 89 0 189 298 18 0 chr1 52295630 52295687 -229897977 - L2 LINE L2 -2 3311 3254 2425 88 0 0 chr1 52295727 52296034 -229897630 + AluSx SINE Alu 1 307 -5 248 307 16 55 chr1 52296115 52296242 -229897422 - MIR SINE MIR -65 197 76 6551 15 0 0 chr1 52296321 52297141 -229896523 - L1PA3 LINE L1 0 6155 5336 * 7074 21 0 0 chr1 52297137 52298057 -229895607 + L1PA3 LINE L1 4421 5340 -806 1796 253 60 61 chr1 52298654 52299176 -229894488 - L2 LINE L2 -79 3234 2705 1655 156 36 11 chr1 52299176 52299480 -229894184 - AluJo SINE Alu 0 311 1 1796 253 60 61 chr1 52299480 52299961 -229893703 - L2 LINE L2 -608 2705 2225 454 305 101 48 chr1 52300217 52300267 -229893397 + L1ME4a LINE L1 5256 5302 -819 886 168 0 0 chr1 52300267 52300398 -229893266 + FLAM_A SINE Alu 1 131 -2 454 305 101 48 chr1 52300398 52300518 -229893146 + L1ME4a LINE L1 5302 5414 -707 1642 104 68 12 chr1 52300518 52300768 -229892896 + AluSx SINE Alu 1 264 -48 953 129 0 6 chr1 52300768 52300931 -229892733 + (GAAA)n Simple_repeat Simple_repeat 4 165 0 454 305 101 48 chr1 52300931 52301522 -229892142 + L1ME4a LINE L1 5413 6065 -56 266 306 14 49 chr1 52301942 52302086 -229891578 + L2 LINE L2 2915 3053 -219 218 367 33 17 chr1 52302181 52302301 -229891363 - MIR SINE MIR 0 262 141 * 301 309 20 59 chr1 52302279 52302431 -229891233 + L2 LINE L2 3127 3272 0 406 290 31 43 chr1 52302442 52302604 -229891060 - MIR SINE MIR -42 220 61 2217 88 20 0 chr1 52302750 52303055 -229890609 + AluSx SINE Alu 2 312 0 202 264 0 19 chr1 52303580 52303633 -229890031 + GA-rich Low_complexity Low_complexity 1 52 0 310 281 0 34 chr1 52303653 52303742 -229889922 + L2 LINE L2 3184 3269 -3 794 273 16 0 chr1 52304731 52304954 -229888710 - MIR SINE MIR 0 262 35 208 225 22 214 chr1 52305326 52305504 -229888160 + L3 LINE CR1 1424 1567 -10 287 333 87 0 chr1 52305525 52305651 -229888013 - MIR SINE MIR -29 233 97 210 388 12 0 chr1 52306319 52306404 -229887260 - MIR SINE MIR -98 164 79 527 289 129 10 chr1 52306509 52306703 -229886961 - MIR SINE MIR -14 248 32 218 244 26 35 chr1 52311943 52312058 -229881606 + (TCTCTG)n Simple_repeat Simple_repeat 3 116 0 28 0 0 0 chr1 52312287 52312315 -229881349 + GC_rich Low_complexity Low_complexity 1 28 0 215 59 0 29 chr1 52312344 52312378 -229881286 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 240 86 0 0 chr1 52314002 52314037 -229879627 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 450 0 0 0 chr1 52315849 52315899 -229877765 + (TCTG)n Simple_repeat Simple_repeat 3 52 0 31 82 0 0 chr1 52316269 52316342 -229877322 + GC_rich Low_complexity Low_complexity 1 73 0 186 43 0 0 chr1 52316488 52316511 -229877153 + (CCCCCA)n Simple_repeat Simple_repeat 1 23 0 2142 125 0 13 chr1 52317260 52317571 -229876093 - AluSx SINE Alu -5 307 1 2142 195 54 71 chr1 52319551 52320126 -229873538 - MLT1F1 LTR MaLR -2 565 1 873 181 70 130 chr1 52320296 52320566 -229873098 + MIR SINE MIR 9 262 0 276 311 34 34 chr1 52321548 52321667 -229871997 + MIR3 SINE MIR 49 167 -41 24 32 0 0 chr1 52323586 52323617 -229870047 + AT_rich Low_complexity Low_complexity 1 31 0 1701 134 3 96 chr1 52325533 52325877 -229867787 - AluJb SINE Alu 0 312 1 1915 125 57 10 chr1 52326094 52326391 -229867273 - AluSx SINE Alu 0 312 2 184 211 105 63 chr1 52326444 52326539 -229867125 - MIR3 SINE MIR -104 104 6 239 345 6 18 chr1 52327897 52328062 -229865602 + (CCA)n Simple_repeat Simple_repeat 3 165 0 764 203 154 26 chr1 52328063 52328290 -229865374 + MIR SINE MIR 7 262 0 214 306 0 0 chr1 52328300 52328362 -229865302 + (CACCAT)n Simple_repeat Simple_repeat 6 67 0 2047 89 3 83 chr1 52328378 52328734 -229864930 + AluSx SINE Alu 1 330 0 924 242 35 13 chr1 52328736 52328974 -229864690 - MIR SINE MIR 0 262 14 518 309 54 25 chr1 52330402 52330606 -229863058 - MIR SINE MIR -32 230 21 2193 129 0 0 chr1 52330896 52331205 -229862459 + AluSx SINE Alu 1 309 -3 212 89 0 44 chr1 52331332 52331377 -229862287 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 708 238 109 0 chr1 52332716 52332909 -229860755 - MIR SINE MIR -18 244 31 279 0 0 0 chr1 52333554 52333585 -229860079 + (CA)n Simple_repeat Simple_repeat 1 31 0 853 148 8 0 chr1 52333828 52333956 -229859708 - FLAM_C SINE Alu 0 133 5 333 0 0 0 chr1 52334031 52334068 -229859596 + (TG)n Simple_repeat Simple_repeat 2 38 0 221 163 0 0 chr1 52334668 52334711 -229858953 + (CA)n Simple_repeat Simple_repeat 1 43 0 21 36 0 0 chr1 52335346 52335374 -229858290 + GC_rich Low_complexity Low_complexity 1 28 0 208 224 0 17 chr1 52335520 52335578 -229858086 + (CGGGG)n Simple_repeat Simple_repeat 1 57 0 280 252 36 79 chr1 52335664 52335803 -229857861 - MIR SINE MIR -22 240 108 692 317 107 18 chr1 52335818 52336156 -229857508 - L2 LINE L2 -27 3286 2919 214 313 0 15 chr1 52336148 52336215 -229857449 - MIR SINE MIR -113 95 30 * 1597 178 3 31 chr1 52336377 52336700 -229856964 - AluJb SINE Alu 0 315 1 195 380 66 0 chr1 52337071 52337192 -229856472 - MIR3 SINE MIR -74 134 6 318 356 0 17 chr1 52337953 52338133 -229855531 + GA-rich Low_complexity Low_complexity 3 179 0 1785 164 7 29 chr1 52338183 52338493 -229855171 - AluJb SINE Alu -9 303 1 784 247 58 73 chr1 52338505 52338875 -229854789 + L1M4 LINE L1 5477 5840 -309 2175 115 3 6 chr1 52338962 52339275 -229854389 + AluSx SINE Alu 1 312 0 213 39 0 0 chr1 52340754 52340780 -229852884 + (TCC)n Simple_repeat Simple_repeat 2 27 0 658 301 92 17 chr1 52342235 52342594 -229851070 - LTR16A LTR ERVL -46 404 19 353 293 36 14 chr1 52343373 52343513 -229850151 - L2 LINE L2 -442 2872 2730 208 326 63 17 chr1 52344276 52344419 -229849245 - MIR SINE MIR -60 202 56 250 309 154 41 chr1 52344459 52344582 -229849082 + MIR SINE MIR 2 138 -124 201 143 0 0 chr1 52346906 52346941 -229846723 + (TG)n Simple_repeat Simple_repeat 2 36 0 430 316 194 14 chr1 52347204 52347665 -229845999 - L2 LINE L2 -2 3311 2709 826 169 0 7 chr1 52347671 52347807 -229845857 - FAM SINE Alu -5 44 1 180 0 0 0 chr1 52348131 52348151 -229845513 + (CTCTG)n Simple_repeat Simple_repeat 2 21 0 252 217 9 17 chr1 52348738 52348853 -229844811 + CT-rich Low_complexity Low_complexity 2 115 0 211 267 0 0 chr1 52349002 52349047 -229844617 + G-rich Low_complexity Low_complexity 4 48 0 188 67 33 0 chr1 52349160 52349190 -229844474 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 240 312 75 11 chr1 52349408 52349501 -229844163 - MIR SINE MIR -86 122 24 292 272 0 70 chr1 52349854 52349968 -229843696 + MIR SINE MIR 48 153 -109 643 276 105 25 chr1 52350596 52350835 -229842829 + MIR SINE MIR 4 261 -1 512 150 406 0 chr1 52351858 52351991 -229841673 - AluSx SINE Alu -125 187 1 301 194 65 0 chr1 52351996 52352058 -229841606 - MIR SINE MIR -65 143 78 1572 184 10 10 chr1 52352593 52352892 -229840772 + AluJo SINE Alu 2 300 -12 36 62 0 0 chr1 52353731 52353795 -229839869 + GC_rich Low_complexity Low_complexity 1 64 0 758 243 15 29 chr1 52356078 52356284 -229837380 - MIR3 SINE MIR -1 207 5 749 183 0 0 chr1 52356599 52356719 -229836945 - FLAM_C SINE Alu -13 120 1 607 257 108 28 chr1 52357416 52357630 -229836034 + MIR SINE MIR 31 261 -1 192 152 0 0 chr1 52357759 52357792 -229835872 + CT-rich Low_complexity Low_complexity 1 33 0 374 300 19 44 chr1 52357869 52358029 -229835635 - MIR SINE MIR -2 260 105 1299 117 0 11 chr1 52358118 52358129 -229835535 + AluSg/x SINE Alu 122 132 -178 2092 126 0 7 chr1 52358129 52358430 -229835234 + AluSx SINE Alu 1 299 -13 1299 117 0 11 chr1 52358430 52358606 -229835058 + AluSg/x SINE Alu 132 307 -3 1055 138 0 6 chr1 52358616 52358797 -229834867 + (GGA)n Simple_repeat Simple_repeat 1 180 0 475 289 64 37 chr1 52359396 52359583 -229834081 - MIR SINE MIR -25 237 46 2312 105 0 9 chr1 52359944 52360259 -229833405 + AluSx SINE Alu 1 312 0 1145 138 51 99 chr1 52360277 52360589 -229833075 + L1ME1 LINE L1 5865 6161 -5 660 213 19 0 chr1 52360612 52360772 -229832892 + L1MB5 LINE L1 6012 6174 0 224 213 16 0 chr1 52361801 52361862 -229831802 + (CCCCAA)n Simple_repeat Simple_repeat 2 63 0 182 196 36 0 chr1 52361886 52361942 -229831722 + (CCCCAA)n Simple_repeat Simple_repeat 3 60 0 1911 143 7 0 chr1 52362000 52362294 -229831370 - AluSx SINE Alu -16 296 1 1780 152 7 14 chr1 52362839 52363135 -229830529 - AluJo SINE Alu -12 300 7 310 313 216 6 chr1 52364044 52364220 -229829444 - MIR SINE MIR -3 259 47 227 261 0 17 chr1 52364987 52365106 -229828558 + (TGGG)n Simple_repeat Simple_repeat 4 120 0 491 283 150 5 chr1 52365398 52365585 -229828079 + MIR SINE MIR 28 241 -21 350 385 6 18 chr1 52365592 52365761 -229827903 - MIR3 SINE MIR 0 208 42 2246 102 3 0 chr1 52366229 52366534 -229827130 - AluSx SINE Alu -5 307 2 190 234 0 0 chr1 52367186 52367233 -229826431 + L2 LINE L2 3005 3051 -221 680 176 6 0 chr1 52367461 52367626 -229826038 + (TGGA)n Simple_repeat Simple_repeat 3 168 0 262 266 16 105 chr1 52367634 52367758 -229825906 + L2 LINE L2 3197 3309 -4 344 345 17 6 chr1 52367760 52367937 -229825727 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 297 312 37 9 chr1 52368742 52368851 -229824813 - MIR3 SINE MIR -6 202 91 232 382 59 0 chr1 52369250 52369352 -229824312 + MIR SINE MIR 2 109 -153 446 307 298 7 chr1 52370820 52371361 -229822303 + L2 LINE L2 1802 2499 -815 204 273 13 39 chr1 52371380 52371457 -229822207 - MIR SINE MIR -1 261 187 704 172 23 31 chr1 52371471 52371599 -229822065 + FRAM SINE Alu 38 164 -12 591 251 66 18 chr1 52371608 52371775 -229821889 - MIR SINE MIR -74 188 14 220 236 41 122 chr1 52371852 52371975 -229821689 + L2 LINE L2 2599 2711 -603 551 269 120 26 chr1 52372105 52372339 -229821325 - MIR SINE MIR -5 257 2 231 296 176 28 chr1 52373274 52373294 -229820370 - MIR SINE MIR 0 262 246 2001 168 106 23 chr1 52373294 52373388 -229820276 + MER47B DNA MER2_type 1 86 -2237 2406 78 0 0 chr1 52373388 52373695 -229819969 + AluSx SINE Alu 1 307 -5 2001 168 106 23 chr1 52373695 52373986 -229819678 + MER47B DNA MER2_type 86 418 0 231 296 176 28 chr1 52373986 52374107 -229819557 - MIR SINE MIR -16 246 100 550 143 0 0 chr1 52374119 52374203 -229819461 + AluJ/FLAM SINE Alu 2 85 -227 191 315 22 22 chr1 52374216 52374305 -229819359 - MIR SINE MIR -170 92 4 2070 103 29 29 chr1 52374631 52374941 -229818723 + AluSq SINE Alu 1 310 -3 2410 72 13 0 chr1 52374941 52375246 -229818418 + AluSp SINE Alu 1 309 -4 2122 102 0 3 chr1 52375469 52375762 -229817902 + AluSc SINE Alu 1 292 -17 190 343 22 44 chr1 52375962 52376099 -229817565 + L2 LINE L2 2948 3081 -191 274 331 69 6 chr1 52377263 52377423 -229816241 - MIR3 SINE MIR -22 186 17 228 282 98 61 chr1 52377755 52378000 -229815664 - L2 LINE L2 -9 3263 3010 209 335 54 42 chr1 52379065 52379232 -229814432 - L2 LINE L2 -877 2437 2269 249 356 34 34 chr1 52379434 52379580 -229814084 + L2 LINE L2 3075 3220 -93 779 145 99 15 chr1 52379582 52379713 -229813951 + AluJo SINE Alu 1 142 -170 183 300 20 0 chr1 52379750 52379800 -229813864 + L2 LINE L2 3263 3313 0 292 341 80 14 chr1 52379853 52380184 -229813480 + L2 LINE L2 1645 2057 -1257 282 323 64 36 chr1 52380159 52380379 -229813285 + L2 LINE L2 3010 3235 -78 * 209 222 0 0 chr1 52380475 52380520 -229813144 + MIR SINE MIR 108 152 -110 2028 106 0 4 chr1 52380770 52381045 -229812619 + AluSx SINE Alu 29 302 -10 318 292 0 0 chr1 52381175 52381247 -229812417 - L2 LINE L2 0 3272 3201 276 271 47 28 chr1 52381426 52381533 -229812131 + L3 LINE CR1 616 724 -853 271 345 43 9 chr1 52381826 52381942 -229811722 + MIR SINE MIR 32 151 -111 2029 131 0 7 chr1 52381943 52382248 -229811416 + AluSx SINE Alu 1 303 -9 2015 104 18 0 chr1 52382248 52382548 -229811116 + AluSx SINE Alu 1 305 0 372 332 88 18 chr1 52382727 52383069 -229810595 - L2 LINE L2 -266 3006 2622 2294 88 3 0 chr1 52383069 52383366 -229810298 + AluSp SINE Alu 1 298 -15 372 332 88 18 chr1 52383366 52383390 -229810274 - L2 LINE L2 -650 2622 2601 502 249 166 10 chr1 52383538 52383731 -229809933 + MIR SINE MIR 40 262 0 339 244 64 0 chr1 52383841 52383919 -229809745 + L2 LINE L2 3146 3228 -44 247 323 75 11 chr1 52383954 52384047 -229809617 - L2 LINE L2 -37 3235 3137 2361 90 3 0 chr1 52384096 52384408 -229809256 + AluSp SINE Alu 1 313 0 2047 96 58 0 chr1 52384434 52384727 -229808937 + AluSg SINE Alu 1 310 0 1953 138 27 0 chr1 52384739 52385037 -229808627 + AluSg SINE Alu 4 309 -1 229 352 0 0 chr1 52385098 52385169 -229808495 - L2 LINE L2 -346 2968 2898 2182 93 0 17 chr1 52385172 52385473 -229808191 + AluSg SINE Alu 1 296 -14 1211 119 0 0 chr1 52385474 52385642 -229808022 + AluSc SINE Alu 133 300 -9 1193 136 5 11 chr1 52385697 52385881 -229807783 - AluSx SINE Alu -129 183 1 580 288 41 6 chr1 52385881 52386051 -229807613 - L2 LINE L2 -600 2714 2539 2115 73 9 76 chr1 52386759 52387087 -229806577 + AluSp SINE Alu 1 306 -7 199 338 84 36 chr1 52387369 52387594 -229806070 + L2 LINE L2 2829 3064 -208 1978 138 10 3 chr1 52389252 52389556 -229804108 - AluJo SINE Alu -6 306 1 198 309 0 0 chr1 52389634 52389689 -229803975 - L3 LINE CR1 -111 1466 1412 224 295 152 0 chr1 52390609 52390714 -229802950 - MIR3 SINE MIR -52 156 36 315 329 39 32 chr1 52392420 52392575 -229801089 - MIR3 SINE MIR -15 193 38 299 258 20 133 chr1 52393818 52393969 -229799695 - MIR SINE MIR -115 147 14 334 121 61 0 chr1 52394283 52394349 -229799315 + MER110A LTR ERV1 25 94 -374 588 196 141 83 chr1 52394646 52394922 -229798742 + MER110A LTR ERV1 177 468 0 2292 39 3 72 chr1 52395180 52395514 -229798150 + AluY SINE Alu 1 311 0 205 109 65 43 chr1 52396214 52396260 -229797404 - MIR SINE MIR -84 124 78 252 318 47 20 chr1 52397400 52397548 -229796116 - MIR3 SINE MIR -46 162 11 241 339 103 63 chr1 52398157 52398458 -229795206 - L2 LINE L2 -9 3263 2951 1762 105 132 4 chr1 52398688 52398946 -229794718 + AluSx SINE Alu 1 291 -21 2195 88 6 82 chr1 52398951 52399092 -229794572 + AluSq SINE Alu 1 106 -207 2288 117 0 0 chr1 52399092 52399390 -229794274 + AluSx SINE Alu 1 298 -14 2195 88 6 82 chr1 52399390 52399567 -229794097 + AluSq SINE Alu 106 295 -18 205 161 0 0 chr1 52399669 52399700 -229793964 + (CA)n Simple_repeat Simple_repeat 1 31 0 872 169 0 0 chr1 52400190 52400320 -229793344 - FLAM_A SINE Alu -3 130 1 210 208 75 38 chr1 52400411 52400464 -229793200 - MIR SINE MIR -101 161 107 664 91 0 0 chr1 52400656 52400744 -229792920 - pTR5 LTR ERV1 -2046 392 305 201 341 98 0 chr1 52400745 52400827 -229792837 - L2 LINE L2 -268 3045 2956 521 176 27 43 chr1 52400911 52401256 -229792408 + C-rich Low_complexity Low_complexity 1 339 0 268 224 15 0 chr1 52402274 52402341 -229791323 - L1MC4a LINE L1 -1875 5933 5866 2337 91 0 3 chr1 52403252 52403548 -229790116 + AluSx SINE Alu 3 297 -15 2311 96 3 3 chr1 52403850 52404152 -229789512 + AluSq SINE Alu 1 302 -11 433 145 29 0 chr1 52404152 52404221 -229789443 + AluSq/x SINE Alu 75 145 -167 2519 71 0 3 chr1 52404222 52404532 -229789132 + AluSx SINE Alu 1 309 -3 4883 161 36 46 chr1 52405242 52406221 -229787443 + LTR5 LTR ERVK 1 969 0 224 150 33 67 chr1 52406291 52406351 -229787313 + MIR SINE MIR 22 79 -129 206 327 55 42 chr1 52406735 52406852 -229786812 + MIR3 SINE MIR 36 157 -51 2225 88 26 3 chr1 52406852 52407157 -229786507 + AluSx SINE Alu 1 312 0 206 327 55 42 chr1 52407157 52407204 -229786460 + MIR3 SINE MIR 157 202 -6 1558 181 117 32 chr1 52408110 52408577 -229785087 + LTR10A LTR ERV1 1 563 -46 956 216 73 151 chr1 52408577 52409284 -229784380 + LTR10A-int LTR ERV1 1 649 -6064 258 176 132 77 chr1 52409329 52409420 -229784244 + LTR10A-int LTR ERV1 975 1070 -5579 5531 94 4 36 chr1 52409483 52409571 -229784093 + HERV17 LTR ERV1 703 792 -6104 2486 58 0 3 chr1 52409571 52409863 -229783801 + AluY SINE Alu 1 291 -20 5531 94 4 36 chr1 52409863 52410742 -229782922 + HERV17 LTR ERV1 792 1686 -5210 3811 53 50 4 chr1 52410758 52411263 -229782401 + LTR17 LTR ERV1 253 780 0 270 143 0 0 chr1 52411263 52411305 -229782359 + HERV17 LTR ERV1 2 43 -8583 * 33187 45 2 4 chr1 52411293 52412626 -229781038 + HERV17 LTR ERV1 1953 3287 -5339 2409 83 3 13 chr1 52412626 52412928 -229780736 + AluY SINE Alu 1 299 -12 33187 45 2 4 chr1 52412928 52415666 -229777998 + HERV17 LTR ERV1 3287 6017 -2609 2227 71 3 0 chr1 52415680 52415976 -229777688 + HERV17 LTR ERV1 6836 8621 -5 2610 46 3 0 chr1 52415980 52416303 -229777361 + LTR17 LTR ERV1 1 324 -456 * 7393 115 16 1 chr1 52416302 52417465 -229776199 + LTR10A-int LTR ERV1 1806 2986 -3910 1406 234 11 25 chr1 52417464 52417827 -229775837 + LTR10A-int LTR ERV1 6290 6647 -2 * 1873 140 174 41 chr1 52417836 52418323 -229775341 + LTR10A LTR ERV1 12 609 0 2723 39 0 0 chr1 52418330 52418636 -229775028 + AluY SINE Alu 1 306 -5 354 248 16 58 chr1 52419123 52419183 -229774481 - MIR SINE MIR -51 211 157 2247 121 7 0 chr1 52419183 52419481 -229774183 + AluSx SINE Alu 1 300 -12 354 248 16 58 chr1 52419481 52419541 -229774123 - MIR SINE MIR -105 157 96 22 35 0 0 chr1 52419559 52419588 -229774076 + AT_rich Low_complexity Low_complexity 1 29 0 253 158 18 35 chr1 52419968 52420025 -229773639 + L2 LINE L2 3216 3271 -1 256 304 25 13 chr1 52420298 52420377 -229773287 + MIR SINE MIR 37 116 -92 201 190 172 17 chr1 52420753 52420811 -229772853 - L2 LINE L2 -4 3268 3202 567 278 103 68 chr1 52420971 52421223 -229772441 + MIR SINE MIR 2 262 0 1146 235 21 8 chr1 52421285 52421523 -229772141 + MIR SINE MIR 16 256 -6 1474 204 8 79 chr1 52422080 52422429 -229771235 + MLT1A1 LTR MaLR 1 321 -44 213 65 0 0 chr1 52422437 52422468 -229771196 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2164 117 0 3 chr1 52422468 52422750 -229770914 - AluSc SINE Alu -26 283 1 1474 204 8 79 chr1 52422750 52422793 -229770871 + MLT1A1 LTR MaLR 321 365 0 1745 218 113 30 chr1 52422953 52423458 -229770206 + MLT1H LTR MaLR 3 549 0 252 331 31 23 chr1 52423467 52423588 -229770076 - MIR SINE MIR -62 146 22 2061 136 14 0 chr1 52423588 52423883 -229769781 + AluSx SINE Alu 1 299 -13 835 102 55 24 chr1 52423893 52424020 -229769644 + FLAM_C SINE Alu 1 131 -2 630 235 53 18 chr1 52424197 52424367 -229769297 + MIR SINE MIR 66 241 -21 2284 123 0 0 chr1 52424735 52425028 -229768636 + AluSx SINE Alu 1 293 -19 2179 127 3 0 chr1 52425028 52425319 -229768345 + AluSx SINE Alu 1 292 -20 297 0 0 0 chr1 52425339 52425372 -229768292 + (CA)n Simple_repeat Simple_repeat 2 34 0 330 192 77 0 chr1 52425378 52425456 -229768208 + MER112 DNA MER1_type 87 170 -90 254 207 93 133 chr1 52425546 52425664 -229768000 - L1M4 LINE L1 -2685 3461 3340 1992 132 14 7 chr1 52425664 52425959 -229767705 - AluSx SINE Alu -15 297 1 2447 60 37 0 chr1 52425961 52426260 -229767404 - AluSp SINE Alu -3 310 1 254 207 93 133 chr1 52426260 52426319 -229767345 - L1M4 LINE L1 -2807 3339 3279 1959 175 0 10 chr1 52426319 52426633 -229767031 - AluJb SINE Alu -1 311 1 2255 118 3 0 chr1 52426634 52426931 -229766733 - AluSp SINE Alu -15 298 1 254 207 93 133 chr1 52426931 52427017 -229766647 - L1M4 LINE L1 -2866 3280 3203 561 140 140 0 chr1 52427043 52427179 -229766485 - L1MA8 LINE L1 -5 6286 6132 745 128 0 146 chr1 52427179 52427343 -229766321 - FRAM SINE Alu -12 164 25 744 85 57 187 chr1 52427364 52427444 -229766220 - L1MA8 LINE L1 -149 6142 6053 2215 125 0 10 chr1 52427444 52427757 -229765907 - AluSg SINE Alu 0 310 1 744 85 57 187 chr1 52427757 52427771 -229765893 - L1MA8 LINE L1 -238 6053 6039 2417 97 3 0 chr1 52427771 52428080 -229765584 - AluSp SINE Alu -3 310 1 744 85 57 187 chr1 52428080 52428230 -229765434 - L1MA8 LINE L1 -252 6039 5929 2135 135 6 116 chr1 52428234 52428715 -229764949 + MSTC LTR MaLR 1 428 0 2527 220 36 53 chr1 52428717 52429064 -229764600 + MSTC-int LTR MaLR 2 353 -1382 2108 124 11 0 chr1 52429064 52429376 -229764288 + AluSx SINE Alu 1 315 0 2527 220 36 53 chr1 52429376 52429642 -229764022 + MSTC-int LTR MaLR 353 606 -1129 2383 91 0 10 chr1 52429642 52429950 -229763714 + AluY SINE Alu 1 305 -6 2527 220 36 53 chr1 52429950 52430052 -229763612 + MSTC-int LTR MaLR 606 708 -1027 1490 178 7 41 chr1 52430052 52430345 -229763319 + MSTB LTR MaLR 1 283 -143 2079 99 34 17 chr1 52430345 52430479 -229763185 + AluSg SINE Alu 1 131 -179 2484 84 0 3 chr1 52430479 52430790 -229762874 + AluY SINE Alu 1 310 -1 2079 99 34 17 chr1 52430790 52430949 -229762715 + AluSg SINE Alu 131 299 -11 612 175 49 35 chr1 52431002 52431145 -229762519 + MIR SINE MIR 68 212 -50 442 287 7 21 chr1 52431545 52431688 -229761976 - MLT1I LTR MaLR -268 141 1 645 314 85 14 chr1 52431738 52432031 -229761633 - L3 LINE CR1 -173 1404 1091 425 330 71 65 chr1 52432192 52432734 -229760930 + L2 LINE L2 2709 3247 -25 280 311 150 56 chr1 52432732 52433038 -229760626 - L2 LINE L2 -14 3258 2924 * 825 169 0 0 chr1 52433190 52433314 -229760350 - FLAM_C SINE Alu -19 124 1 21 0 0 0 chr1 52433386 52433407 -229760257 + AT_rich Low_complexity Low_complexity 1 21 0 440 179 37 21 chr1 52433410 52433511 -229760153 - MLT1H LTR MaLR -28 532 425 1042 253 36 0 chr1 52433574 52433823 -229759841 - MLT1H LTR MaLR -268 281 24 2206 118 10 0 chr1 52434020 52434325 -229759339 + AluJb SINE Alu 1 308 -4 233 243 57 0 chr1 52434333 52434403 -229759261 + MIR SINE MIR 84 157 -105 694 158 228 6 chr1 52434407 52434565 -229759099 + MER66B LTR ERV1 291 483 -3 180 0 0 0 chr1 52435355 52435375 -229758289 + (T)n Simple_repeat Simple_repeat 1 20 0 1110 70 0 0 chr1 52435375 52435503 -229758161 - AluSq/x SINE Alu -179 133 6 2266 202 17 26 chr1 52435862 52435935 -229757729 + L1ME1 LINE L1 5394 5466 -700 2173 141 0 0 chr1 52435935 52436239 -229757425 - AluSx SINE Alu -8 304 1 2266 202 17 26 chr1 52436239 52436443 -229757221 + L1ME1 LINE L1 5466 5670 -496 2347 110 3 7 chr1 52436443 52436751 -229756913 + AluSq SINE Alu 1 307 -6 2266 202 17 26 chr1 52436751 52437007 -229756657 + L1ME1 LINE L1 5670 5923 -243 1824 137 29 11 chr1 52437387 52437690 -229755974 - AluSx SINE Alu 0 308 1 1895 133 0 87 chr1 52437731 52438063 -229755601 - AluJo SINE Alu -9 303 1 272 276 52 0 chr1 52438071 52438187 -229755477 + L1ME1 LINE L1 6045 6166 0 990 281 45 8 chr1 52438201 52438553 -229755111 - L1ME3 LINE L1 -237 5925 5561 23 33 0 0 chr1 52439086 52439116 -229754548 + AT_rich Low_complexity Low_complexity 1 30 0 1244 142 0 0 chr1 52440913 52441089 -229752575 - AluSg/x SINE Alu -5 307 132 268 342 27 9 chr1 52441503 52441614 -229752050 + L3 LINE CR1 442 554 -1023 1226 170 9 36 chr1 52441631 52441804 -229751860 - AluJo SINE Alu -8 304 128 258 32 0 0 chr1 52441804 52441835 -229751829 + (TA)n Simple_repeat Simple_repeat 1 31 0 2616 60 0 0 chr1 52441835 52442137 -229751527 - AluY SINE Alu -9 302 1 1226 170 9 36 chr1 52442137 52442186 -229751478 - AluJo SINE Alu -182 130 87 458 128 47 70 chr1 52442263 52442349 -229751315 + AluJo SINE Alu 86 169 -143 1420 103 0 0 chr1 52442349 52442533 -229751131 + AluSg/x SINE Alu 114 297 -13 933 167 0 30 chr1 52442537 52442705 -229750959 + FRAM SINE Alu 1 163 -3 2185 134 0 7 chr1 52442804 52443109 -229750555 - AluSx SINE Alu -9 303 1 347 123 46 0 chr1 52443165 52443230 -229750434 - HY1 scRNA scRNA -11 101 34 2447 93 0 0 chr1 52443386 52443686 -229749978 + AluSc SINE Alu 2 301 -8 2369 76 0 7 chr1 52443689 52444003 -229749661 + AluSx SINE Alu 1 312 0 1181 127 12 0 chr1 52444003 52444169 -229749495 + AluSg/x SINE Alu 132 299 -11 374 304 104 10 chr1 52444171 52444380 -229749284 + L1MEc LINE L1 2211 2403 -3812 1679 149 0 15 chr1 52444640 52444901 -229748763 + AluJb SINE Alu 39 295 -17 2431 71 7 3 chr1 52445364 52445674 -229747990 - AluY SINE Alu 0 311 1 2093 155 3 0 chr1 52445714 52446011 -229747653 + AluJb SINE Alu 1 298 -14 2479 74 3 0 chr1 52446055 52446352 -229747312 - AluSq SINE Alu -15 298 1 260 269 75 32 chr1 52446388 52446481 -229747183 + L3 LINE CR1 1249 1345 -232 856 249 96 22 chr1 52446515 52446744 -229746920 - MIR SINE MIR -16 246 1 257 245 206 0 chr1 52446747 52446849 -229746815 + L3 LINE CR1 1352 1474 -103 602 306 86 5 chr1 52446881 52447090 -229746574 - MIR SINE MIR -35 227 2 2220 92 6 50 chr1 52447114 52447431 -229746233 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr1 52447587 52447608 -229746056 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 52447646 52447674 -229745990 + AT_rich Low_complexity Low_complexity 1 28 0 1906 134 27 20 chr1 52447686 52447985 -229745679 + AluJb SINE Alu 1 301 -11 354 261 180 9 chr1 52447988 52448210 -229745454 + L1MC4a LINE L1 5378 5637 -2171 310 197 0 79 chr1 52448232 52448308 -229745356 + L1MC4a LINE L1 5847 5916 -1892 2432 60 10 10 chr1 52448308 52448610 -229745054 + AluSq SINE Alu 1 302 -11 267 176 65 39 chr1 52449460 52449613 -229744051 + CT-rich Low_complexity Low_complexity 2 158 0 2211 132 0 3 chr1 52449613 52449916 -229743748 - AluSx SINE Alu -10 302 1 827 144 23 23 chr1 52449956 52450088 -229743576 + AluJo SINE Alu 3 134 -178 23 0 0 0 chr1 52450088 52450111 -229743553 + AT_rich Low_complexity Low_complexity 1 23 0 2536 69 0 0 chr1 52450121 52450425 -229743239 + AluY SINE Alu 1 304 -7 771 165 0 0 chr1 52450425 52450540 -229743124 - AluJo/FLAM SINE Alu -196 116 2 708 210 46 115 chr1 52450632 52450727 -229742937 + MLT1J LTR MaLR 26 126 -385 2348 51 7 0 chr1 52450727 52451001 -229742663 - AluSp SINE Alu -37 276 1 708 210 46 115 chr1 52451001 52451210 -229742454 + MLT1J LTR MaLR 126 309 -202 473 250 75 19 chr1 52451295 52451455 -229742209 + MLT1J LTR MaLR 337 505 -6 428 208 59 0 chr1 52451460 52451561 -229742103 - Charlie8 DNA MER1_type -2016 401 295 742 128 30 45 chr1 52451704 52451837 -229741827 - FLAM_C SINE Alu -2 131 1 384 361 89 0 chr1 52451901 52452070 -229741594 + MIR3 SINE MIR 17 200 -8 2556 67 0 10 chr1 52452646 52452959 -229740705 + AluY SINE Alu 2 311 0 2317 112 10 0 chr1 52452972 52453276 -229740388 + AluSq SINE Alu 1 307 -6 2422 92 16 3 chr1 52453348 52453654 -229740010 - AluSq SINE Alu -3 310 1 2462 83 0 10 chr1 52453905 52454219 -229739445 + AluY SINE Alu 1 311 0 2165 129 0 0 chr1 52454627 52454929 -229738735 - AluSx SINE Alu -10 302 1 1131 131 6 18 chr1 52455362 52455510 -229738154 - AluSq SINE Alu -32 281 134 2437 88 0 7 chr1 52455510 52455817 -229737847 - AluSx SINE Alu -7 305 1 1131 131 6 18 chr1 52455817 52455836 -229737828 - AluSq SINE Alu -179 134 116 204 212 374 20 chr1 52455837 52455914 -229737750 + L2 LINE L2 3180 3229 -84 2397 96 0 3 chr1 52455914 52456217 -229737447 - AluSx SINE Alu -10 302 1 204 212 374 20 chr1 52456217 52456238 -229737426 + L2 LINE L2 3229 3313 0 674 292 24 32 chr1 52456591 52456849 -229736815 + MIR SINE MIR 1 261 -1 216 265 29 0 chr1 52460806 52460874 -229732790 + GA-rich Low_complexity Low_complexity 1 70 0 205 314 154 30 chr1 52461503 52461672 -229731992 - L2 LINE L2 -178 3094 2905 279 170 0 0 chr1 52461675 52461722 -229731942 + MER69 DNA AcHobo 1 47 -2479 2544 43 20 0 chr1 52461723 52462023 -229731641 + AluY SINE Alu 1 306 -5 1516 106 31 0 chr1 52462025 52462251 -229731413 + MER41A LTR ERV1 322 554 0 183 297 18 63 chr1 52462261 52462372 -229731292 + L2 LINE L2 2626 2731 -583 265 254 0 0 chr1 52462396 52462463 -229731201 - MER69 DNA AcHobo -12 2514 2448 566 63 0 13 chr1 52462537 52462616 -229731048 - Charlie1 DNA MER1_type -830 1931 1854 2149 110 7 0 chr1 52462621 52462911 -229730753 + AluSx SINE Alu 1 292 -20 2142 227 22 67 chr1 52462913 52463387 -229730277 - L1M4 LINE L1 -1803 4343 3849 2139 103 37 0 chr1 52463387 52463687 -229729977 - AluSx SINE Alu -1 311 1 2142 227 22 67 chr1 52463687 52463799 -229729865 - L1M4 LINE L1 -2297 3849 3733 2195 126 0 0 chr1 52463799 52464093 -229729571 - AluSx SINE Alu -18 294 1 2142 227 22 67 chr1 52464093 52464151 -229729513 - L1M4 LINE L1 -2413 3733 3674 2235 63 0 0 chr1 52464151 52464421 -229729243 - AluY SINE Alu -15 296 27 2142 227 22 67 chr1 52464421 52464549 -229729115 - L1M4 LINE L1 -2472 3674 3604 1784 70 0 46 chr1 52464549 52464790 -229728874 - AluSq SINE Alu 0 313 84 2432 17 7 17 chr1 52464796 52465084 -229728580 - AluY SINE Alu 0 311 27 1439 126 25 18 chr1 52465084 52465357 -229728307 - L1MA4 LINE L1 -9 6291 6017 2439 69 10 10 chr1 52465359 52465664 -229728000 - AluY SINE Alu -6 305 1 2341 93 7 3 chr1 52465664 52465966 -229727698 - AluSp SINE Alu -10 303 1 963 158 56 36 chr1 52465992 52466188 -229727476 + MER20 DNA MER1_type 19 218 -1 2259 117 7 0 chr1 52466246 52466544 -229727120 - AluSx SINE Alu -12 300 1 666 255 40 50 chr1 52466559 52466655 -229727009 - L1M4 LINE L1 -2734 3412 3317 593 212 217 16 chr1 52466655 52466839 -229726825 + MER58A DNA MER1_type 4 224 0 666 255 40 50 chr1 52466839 52467040 -229726624 - L1M4 LINE L1 -2829 3317 3118 1027 155 44 129 chr1 52467053 52467175 -229726489 - MER65A LTR ERV1 0 445 314 2026 152 3 10 chr1 52467175 52467485 -229726179 - AluJb SINE Alu -4 308 1 1027 155 44 129 chr1 52467485 52467704 -229725960 - MER65A LTR ERV1 -131 314 133 1042 189 27 112 chr1 52467705 52467810 -229725854 - MER66A LTR ERV1 -1 477 365 1797 178 0 0 chr1 52467810 52468091 -229725573 - AluJo SINE Alu -21 291 11 1042 189 27 112 chr1 52468091 52468323 -229725341 - MER66A LTR ERV1 -113 365 169 231 256 310 16 chr1 52468299 52468428 -229725236 - MER41B LTR ERV1 -295 340 174 * 2075 152 0 43 chr1 52468483 52468527 -229725137 - MER65A-int LTR ERV1 -1 6675 6631 1878 151 14 0 chr1 52468527 52468811 -229724853 + AluSx SINE Alu 1 288 -24 2075 152 0 43 chr1 52468811 52469134 -229724530 - MER65A-int LTR ERV1 -45 6631 6324 2640 37 0 0 chr1 52469209 52469503 -229724161 - AluY SINE Alu -17 294 1 4153 43 4 2 chr1 52469527 52470016 -229723648 + LTR2B LTR ERV1 1 490 0 5536 92 50 36 chr1 52470016 52470849 -229722815 + Harlequin LTR ERV1 1 848 -6048 2420 64 0 20 chr1 52470849 52471147 -229722517 + AluY SINE Alu 1 292 -19 5536 92 50 36 chr1 52471147 52471201 -229722463 + Harlequin LTR ERV1 848 900 -5996 2430 68 65 11 chr1 52471187 52471569 -229722095 + Harlequin LTR ERV1 1572 1974 -4922 * 5821 97 1 7 chr1 52471569 52472322 -229721342 - LTR5 LTR ERVK 0 969 221 1354 51 0 0 chr1 52472329 52472524 -229721140 + Harlequin LTR ERV1 2380 2574 -4322 * 23562 118 12 6 chr1 52472523 52476045 -229717619 + Harlequin LTR ERV1 3352 6896 0 4205 43 0 4 chr1 52476045 52476537 -229717127 + LTR2B LTR ERV1 1 490 0 1020 143 9 71 chr1 52476537 52476715 -229716949 - LOR1-int LTR ERV1 -1867 4809 4644 248 81 0 0 chr1 52476717 52476754 -229716910 + AluSx SINE Alu 264 300 -8 1074 72 0 22 chr1 52476810 52476949 -229716715 + AluY SINE Alu 3 138 -173 2200 103 3 3 chr1 52476950 52477242 -229716422 + AluSp SINE Alu 7 298 -15 2315 85 0 0 chr1 52477244 52477563 -229716101 + AluY SINE Alu 1 319 0 686 227 74 30 chr1 52477563 52477629 -229716035 - LOR1-int LTR ERV1 -6144 1976 1914 360 0 0 0 chr1 52477629 52477669 -229715995 + (TG)n Simple_repeat Simple_repeat 2 41 0 2324 96 0 10 chr1 52477670 52477973 -229715691 - AluSc SINE Alu -9 300 1 686 227 74 30 chr1 52477973 52478039 -229715625 - LOR1-int LTR ERV1 -6206 1914 1852 2386 101 0 7 chr1 52478039 52478347 -229715317 - AluSp SINE Alu -7 306 1 686 227 74 30 chr1 52478347 52478384 -229715280 - LOR1-int LTR ERV1 -6268 1852 1818 1650 186 41 0 chr1 52478384 52478679 -229714985 - AluJo SINE Alu -5 307 1 686 227 74 30 chr1 52478679 52478844 -229714820 - LOR1-int LTR ERV1 -6302 1818 1623 2083 126 27 0 chr1 52478850 52479144 -229714520 - AluY SINE Alu -9 302 1 425 222 46 9 chr1 52479157 52479265 -229714399 - LOR1-int LTR ERV1 -6626 1494 1383 26 0 0 0 chr1 52479295 52479321 -229714343 + AT_rich Low_complexity Low_complexity 1 26 0 263 186 0 0 chr1 52479382 52479425 -229714239 + MSTA LTR MaLR 6 48 -380 * 1006 84 155 70 chr1 52479409 52479443 -229714221 + MSTA LTR MaLR 164 194 -234 1991 113 36 43 chr1 52479443 52479745 -229713919 + AluSg SINE Alu 1 300 -10 1006 84 155 70 chr1 52479745 52479923 -229713741 + MSTA LTR MaLR 194 394 -34 2464 77 0 0 chr1 52479923 52480222 -229713442 - AluY SINE Alu -12 299 1 204 125 0 0 chr1 52480232 52480264 -229713400 + (T)n Simple_repeat Simple_repeat 1 32 0 1242 137 26 31 chr1 52480304 52480531 -229713133 - THE1B LTR MaLR -138 226 1 324 164 33 0 chr1 52480607 52480668 -229712996 - Alu SINE Alu -4 298 236 1314 163 48 78 chr1 52480687 52480821 -229712843 - THE1C LTR MaLR -28 347 210 7831 78 6 5 chr1 52480821 52481789 -229711875 - LTR5 LTR ERVK 0 969 1 1314 163 48 78 chr1 52481789 52481986 -229711678 - THE1C LTR MaLR -165 210 26 2357 74 0 17 chr1 52481986 52482285 -229711379 + AluY SINE Alu 1 294 -17 716 158 0 42 chr1 52482285 52482405 -229711259 - AluSq/x SINE Alu -196 116 2 936 140 33 13 chr1 52482421 52482571 -229711093 + FRAM SINE Alu 1 145 -31 2482 93 0 3 chr1 52482623 52482935 -229710729 - AluSx SINE Alu -1 311 1 1128 147 6 0 chr1 52482960 52483137 -229710527 - AluY SINE Alu -5 306 129 1205 112 85 5 chr1 52483148 52483336 -229710328 - AluSq SINE Alu -108 205 3 1930 86 12 12 chr1 52483360 52483604 -229710060 - AluSp SINE Alu -69 244 1 936 45 8 61 chr1 52483604 52483727 -229709937 - AluY SINE Alu -9 302 185 825 95 17 9 chr1 52483727 52483843 -229709821 - AluY SINE Alu -160 151 35 2138 114 7 10 chr1 52483848 52484146 -229709518 - AluSx SINE Alu -15 297 1 835 172 0 0 chr1 52484163 52484291 -229709373 - FLAM_C SINE Alu -4 129 2 1217 205 72 22 chr1 52484291 52484569 -229709095 - AluJo SINE Alu -20 292 1 1412 169 32 47 chr1 52484645 52484764 -229708900 + AluJo SINE Alu 7 126 -186 2408 84 0 0 chr1 52484764 52485062 -229708602 - AluSg SINE Alu -12 298 1 1412 169 32 47 chr1 52485062 52485220 -229708444 + AluJo SINE Alu 126 280 -32 22 70 0 0 chr1 52485255 52485298 -229708366 + AT_rich Low_complexity Low_complexity 1 43 0 381 253 182 24 chr1 52485840 52486010 -229707654 - L2 LINE L2 -4 3309 3113 271 333 140 0 chr1 52486096 52486210 -229707454 + L2 LINE L2 3137 3266 -6 586 164 8 31 chr1 52486268 52486396 -229707268 - L1MB8 LINE L1 -229 5949 5825 2284 149 54 88 chr1 52486407 52486452 -229707212 - L1MB3 LINE L1 -7 6176 6131 1905 110 31 77 chr1 52486452 52486640 -229707024 - AluSx SINE Alu 0 312 144 2310 64 43 0 chr1 52486640 52486922 -229706742 - AluSp SINE Alu -19 294 1 1905 110 31 77 chr1 52486922 52487060 -229706604 - AluSx SINE Alu -168 144 1 2284 149 54 88 chr1 52487060 52487394 -229706270 - L1MB3 LINE L1 -52 6131 5787 2196 126 0 7 chr1 52487394 52487696 -229705968 - AluSp SINE Alu -13 300 1 2303 87 20 3 chr1 52487698 52487996 -229705668 - AluY SINE Alu -8 303 1 2284 149 54 88 chr1 52487996 52488223 -229705441 - L1MB3 LINE L1 -397 5786 5587 1924 149 0 36 chr1 52488228 52488397 -229705267 - AluJb SINE Alu -14 298 125 438 20 0 0 chr1 52488397 52488448 -229705216 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2439 55 0 3 chr1 52488449 52488738 -229704926 - AluY SINE Alu -23 288 1 1924 149 0 36 chr1 52488738 52488875 -229704789 - AluJb SINE Alu -186 126 1 1967 154 53 19 chr1 52488876 52489253 -229704411 - L1MB8 LINE L1 -427 5757 5368 717 170 7 37 chr1 52489368 52489503 -229704161 - AluJb SINE Alu -180 132 2 1687 173 6 58 chr1 52489534 52489680 -229703984 + AluJb SINE Alu 1 124 -188 2338 97 0 29 chr1 52489680 52489990 -229703674 + AluSx SINE Alu 1 301 -11 1687 173 6 58 chr1 52489990 52490156 -229703508 + AluJb SINE Alu 124 297 -15 1850 98 21 113 chr1 52490156 52490484 -229703180 + AluYb8 SINE Alu 1 298 -20 1757 54 8 73 chr1 52490546 52490805 -229702859 - AluY SINE Alu -69 242 1 330 279 62 16 chr1 52490844 52490973 -229702691 + MIR SINE MIR 52 186 -76 2794 32 0 3 chr1 52490980 52491295 -229702369 - AluYb8 SINE Alu 0 318 5 1638 166 20 43 chr1 52491313 52491614 -229702050 + AluJo SINE Alu 1 294 -18 2106 100 78 0 chr1 52492394 52492675 -229700989 - AluSp SINE Alu -10 303 1 1699 240 35 59 chr1 52493079 52493256 -229700408 + MER74B LTR ERVL 58 238 -384 1543 153 106 18 chr1 52493256 52493530 -229700134 - AluJo SINE Alu -14 298 1 1699 240 35 59 chr1 52493530 52493931 -229699733 + MER74B LTR ERVL 238 622 0 1346 159 64 9 chr1 52494666 52494740 -229698924 + AluJo SINE Alu 45 113 -199 2105 116 10 0 chr1 52494740 52495032 -229698632 + AluSx SINE Alu 1 295 -17 1346 159 64 9 chr1 52495032 52495190 -229698474 + AluJo SINE Alu 113 290 -22 2287 90 23 0 chr1 52495413 52495712 -229697952 + AluSc SINE Alu 1 306 -3 2112 64 50 7 chr1 52495993 52496273 -229697391 + AluSg SINE Alu 1 292 -18 2074 54 9 132 chr1 52496300 52496656 -229697008 - AluY SINE Alu 0 311 1 1864 120 67 23 chr1 52496754 52497053 -229696611 - AluJb SINE Alu 0 312 1 720 264 18 66 chr1 52497205 52497400 -229696264 + MIR SINE MIR 4 188 -74 2371 74 0 3 chr1 52497400 52497697 -229695967 + AluSg SINE Alu 1 296 -14 720 264 18 66 chr1 52497697 52497728 -229695936 + MIR SINE MIR 188 219 -43 32 57 0 0 chr1 52499001 52499054 -229694610 + GC_rich Low_complexity Low_complexity 1 53 0 222 318 216 6 chr1 52501386 52501562 -229692102 - L2 LINE L2 -512 2802 2590 1633 180 0 24 chr1 52501738 52502027 -229691637 - AluJo SINE Alu -15 297 16 539 246 78 70 chr1 52502072 52502177 -229691487 - MIR SINE MIR 0 262 159 2173 122 0 0 chr1 52502177 52502486 -229691178 - AluSx SINE Alu 0 313 5 1520 144 25 103 chr1 52502492 52502812 -229690852 - AluJo SINE Alu -17 295 1 539 246 78 70 chr1 52502812 52502953 -229690711 - MIR SINE MIR -107 155 5 205 342 89 35 chr1 52503113 52503370 -229690294 - L2 LINE L2 -214 3058 2796 1070 204 64 28 chr1 52504111 52504361 -229689303 - MIR SINE MIR -2 260 2 1257 291 247 37 chr1 52504614 52505457 -229688207 + L3 LINE CR1 554 1573 -4 180 368 15 15 chr1 52505536 52505604 -229688060 - L2 LINE L2 -5 3267 3200 2302 81 0 7 chr1 52505633 52505951 -229687713 - AluSp SINE Alu 0 317 2 430 235 0 0 chr1 52506580 52506661 -229687003 - L2 LINE L2 -13 3259 3179 2036 150 0 7 chr1 52506724 52507030 -229686634 + AluJb SINE Alu 1 304 -8 2365 109 0 0 chr1 52507192 52507495 -229686169 + AluSg SINE Alu 1 303 -7 762 214 65 7 chr1 52507522 52507676 -229685988 + FRAM SINE Alu 1 163 -3 1903 156 24 0 chr1 52507677 52507972 -229685692 + AluJb SINE Alu 1 302 -10 1705 131 57 47 chr1 52508027 52508348 -229685316 + AluSx SINE Alu 4 312 0 1103 130 17 11 chr1 52508348 52508525 -229685139 + AluSg/x SINE Alu 132 309 -1 1439 185 46 20 chr1 52508540 52508842 -229684822 + AluJo SINE Alu 1 310 -2 2542 68 0 0 chr1 52508886 52509180 -229684484 - AluSc SINE Alu -15 294 1 389 255 104 61 chr1 52509196 52509474 -229684190 + L1ME LINE L1 5106 5395 -751 278 325 50 0 chr1 52509557 52509677 -229683987 + L1ME LINE L1 5479 5604 -517 752 189 8 0 chr1 52509688 52509810 -229683854 + AluJ SINE Alu 2 124 -188 494 103 0 0 chr1 52509810 52509878 -229683786 - Alu SINE Alu -15 295 228 1289 126 23 0 chr1 52509878 52510052 -229683612 - AluSq SINE Alu -135 178 1 860 161 63 0 chr1 52510065 52510208 -229683456 + AluJ SINE Alu 129 280 -32 2619 75 0 0 chr1 52510224 52510531 -229683133 + AluSx SINE Alu 1 307 -5 1191 197 0 14 chr1 52510531 52510744 -229682920 + AluJo SINE Alu 85 294 -18 2357 104 10 0 chr1 52510860 52511167 -229682497 + AluSx SINE Alu 1 310 -2 1887 137 48 10 chr1 52511176 52511468 -229682196 + AluSx SINE Alu 1 303 -9 1616 181 11 11 chr1 52511672 52511953 -229681711 - AluJb SINE Alu -26 286 6 198 232 107 0 chr1 52512245 52512301 -229681363 + MIR3 SINE MIR 133 194 -14 2437 51 3 3 chr1 52512312 52512604 -229681060 - AluY SINE Alu -19 292 1 749 301 34 0 chr1 52512685 52512891 -229680773 - MIR SINE MIR -48 214 2 418 194 102 20 chr1 52513662 52513760 -229679904 - MIR SINE MIR -50 212 107 467 322 17 33 chr1 52513886 52514066 -229679598 + MER5B DNA MER1_type 1 177 -1 2290 132 0 0 chr1 52514194 52514505 -229679159 - AluSx SINE Alu -1 311 1 713 271 138 28 chr1 52514506 52514831 -229678833 - HAL1 LINE L1 -1586 921 561 874 173 30 18 chr1 52514841 52515009 -229678655 - AluJo SINE Alu -22 290 121 256 250 0 17 chr1 52515016 52515076 -229678588 - HAL1 LINE L1 -1987 520 462 309 324 29 0 chr1 52515085 52515190 -229678474 - MER7A DNA MER2_type -1 336 229 23 33 0 0 chr1 52515190 52515220 -229678444 + AT_rich Low_complexity Low_complexity 1 30 0 235 210 129 0 chr1 52515312 52515374 -229678290 - MER7A DNA MER2_type -266 80 13 299 273 0 20 chr1 52515400 52515499 -229678165 + (TA)n Simple_repeat Simple_repeat 1 97 0 2061 79 0 26 chr1 52515527 52515823 -229677841 + AluY SINE Alu 25 313 0 1189 130 0 0 chr1 52515823 52515985 -229677679 + AluSg/x SINE Alu 132 293 -19 2471 70 0 3 chr1 52515988 52516287 -229677377 + AluY SINE Alu 1 298 -13 2252 98 11 0 chr1 52516507 52516793 -229676871 + AluSx SINE Alu 1 289 -23 257 320 124 49 chr1 52516813 52517038 -229676626 + MIR SINE MIR 18 259 -3 4182 170 69 38 chr1 52517074 52517087 -229676577 + MER21A LTR ERV1 7 18 -913 378 0 0 0 chr1 52517087 52517129 -229676535 + (TG)n Simple_repeat Simple_repeat 1 42 0 4182 170 69 38 chr1 52517129 52517489 -229676175 + MER21A LTR ERV1 18 365 -566 1762 183 0 17 chr1 52517489 52517790 -229675874 + AluJb SINE Alu 1 296 -16 4182 170 69 38 chr1 52517790 52518268 -229675396 + MER21A LTR ERV1 365 886 -45 267 190 0 0 chr1 52518685 52518743 -229674921 + CT-rich Low_complexity Low_complexity 2 59 0 1472 97 11 0 chr1 52518758 52518944 -229674720 + AluSq SINE Alu 1 188 -125 663 87 0 0 chr1 52518944 52519036 -229674628 + AluSg/x SINE Alu 219 310 0 1185 237 44 36 chr1 52519042 52519250 -229674414 - HAL1 LINE L1 -2048 459 245 2181 103 20 0 chr1 52519250 52519542 -229674122 + AluSp SINE Alu 1 298 -15 1185 237 44 36 chr1 52519542 52519696 -229673968 - HAL1 LINE L1 -2262 245 94 2409 91 10 0 chr1 52519698 52520007 -229673657 - AluSx SINE Alu 0 312 1 369 211 0 40 chr1 52520045 52520121 -229673543 + L2 LINE L2 2998 3070 -202 218 331 136 26 chr1 52520125 52520279 -229673385 - L2 LINE L2 0 3272 3102 714 195 8 0 chr1 52520282 52520410 -229673254 + FLAM_C SINE Alu 6 134 -9 2193 111 27 0 chr1 52520414 52520712 -229672952 + AluSq SINE Alu 6 311 -2 2590 71 0 0 chr1 52520731 52521040 -229672624 + AluY SINE Alu 1 309 -2 369 287 60 90 chr1 52521086 52521193 -229672471 - L2 LINE L2 -173 3099 2997 1995 159 3 3 chr1 52521193 52521489 -229672175 + AluSx SINE Alu 5 300 -12 369 287 60 90 chr1 52521489 52521548 -229672116 - L2 LINE L2 -275 2997 2938 203 260 156 0 chr1 52521643 52521720 -229671944 + L2 LINE L2 3128 3216 -97 313 272 12 130 chr1 52522228 52522390 -229671274 - MIR3 SINE MIR -15 193 51 328 228 98 0 chr1 52523157 52523249 -229670415 + MIR SINE MIR 34 134 -128 228 67 0 0 chr1 52523254 52523284 -229670380 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 2104 108 0 24 chr1 52523294 52523589 -229670075 - AluJo SINE Alu -20 292 5 391 216 186 0 chr1 52523590 52523692 -229669972 + MIR SINE MIR 111 231 -31 26 0 0 0 chr1 52525242 52525268 -229668396 + GC_rich Low_complexity Low_complexity 1 26 0 251 250 33 0 chr1 52525424 52525484 -229668180 + L2 LINE L2 3206 3267 -5 342 0 0 0 chr1 52525610 52525648 -229668016 + (CA)n Simple_repeat Simple_repeat 2 39 0 523 176 126 148 chr1 52525746 52525844 -229667820 - MER5A DNA MER1_type -3 186 92 2465 80 0 13 chr1 52525844 52526158 -229667506 - AluSx SINE Alu -2 310 1 523 176 126 148 chr1 52526158 52526241 -229667423 - MER5A DNA MER1_type -97 92 9 771 163 49 0 chr1 52526607 52526730 -229666934 - FLAM_A SINE Alu -4 129 1 2560 68 3 3 chr1 52526860 52527168 -229666496 - AluSg SINE Alu -2 308 1 927 101 0 39 chr1 52527227 52527356 -229666308 - FLAM_C SINE Alu -9 124 1 2082 120 21 0 chr1 52527439 52527730 -229665934 - AluSx SINE Alu -14 298 2 365 250 12 0 chr1 52527987 52528067 -229665597 - L2 LINE L2 -9 3263 3183 512 258 209 23 chr1 52528082 52528384 -229665280 - L2 LINE L2 -833 2481 2124 2027 136 27 0 chr1 52528393 52528694 -229664970 - AluSx SINE Alu -3 309 1 432 331 39 0 chr1 52528871 52529001 -229664663 + L2 LINE L2 2628 2762 -552 884 164 26 0 chr1 52529005 52529157 -229664507 + MER5A DNA MER1_type 34 189 0 493 242 141 30 chr1 52529228 52529356 -229664308 + MIR SINE MIR 2 161 -101 2384 83 0 3 chr1 52529356 52529656 -229664008 + AluSx SINE Alu 7 305 -7 493 242 141 30 chr1 52529656 52529725 -229663939 + MIR SINE MIR 161 221 -41 294 73 0 0 chr1 52530029 52530070 -229663594 + (CCG)n Simple_repeat Simple_repeat 2 42 0 2328 110 0 0 chr1 52531159 52531469 -229662195 - AluSg SINE Alu 0 310 1 2478 67 7 0 chr1 52531471 52531768 -229661896 - AluSg SINE Alu -11 299 1 804 206 34 0 chr1 52531780 52531926 -229661738 + AluJb SINE Alu 130 280 -32 22 70 0 0 chr1 52531961 52532004 -229661660 + AT_rich Low_complexity Low_complexity 1 43 0 381 253 182 24 chr1 52532546 52532716 -229660948 - L2 LINE L2 -4 3309 3113 271 333 140 0 chr1 52532802 52532916 -229660748 + L2 LINE L2 3137 3266 -6 586 164 8 31 chr1 52532974 52533102 -229660562 - L1MB8 LINE L1 -229 5949 5825 2284 149 54 88 chr1 52533113 52533158 -229660506 - L1MB3 LINE L1 -7 6176 6131 1905 110 31 77 chr1 52533158 52533346 -229660318 - AluSx SINE Alu 0 312 144 2310 64 43 0 chr1 52533346 52533628 -229660036 - AluSp SINE Alu -19 294 1 1905 110 31 77 chr1 52533628 52533766 -229659898 - AluSx SINE Alu -168 144 1 2284 149 54 88 chr1 52533766 52534100 -229659564 - L1MB3 LINE L1 -52 6131 5787 2196 126 0 7 chr1 52534100 52534402 -229659262 - AluSp SINE Alu -13 300 1 2303 87 20 3 chr1 52534404 52534702 -229658962 - AluY SINE Alu -8 303 1 2284 149 54 88 chr1 52534702 52534929 -229658735 - L1MB3 LINE L1 -397 5786 5587 1924 149 0 36 chr1 52534934 52535103 -229658561 - AluJb SINE Alu -14 298 125 438 20 0 0 chr1 52535103 52535154 -229658510 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2439 55 0 3 chr1 52535155 52535444 -229658220 - AluY SINE Alu -23 288 1 1924 149 0 36 chr1 52535444 52535581 -229658083 - AluJb SINE Alu -186 126 1 1967 154 53 19 chr1 52535582 52535959 -229657705 - L1MB8 LINE L1 -427 5757 5368 717 170 7 37 chr1 52536074 52536209 -229657455 - AluJb SINE Alu -180 132 2 1687 173 6 58 chr1 52536240 52536386 -229657278 + AluJb SINE Alu 1 124 -188 2338 97 0 29 chr1 52536386 52536696 -229656968 + AluSx SINE Alu 1 301 -11 1687 173 6 58 chr1 52536696 52536862 -229656802 + AluJb SINE Alu 124 297 -15 1850 98 21 113 chr1 52536862 52537190 -229656474 + AluYb8 SINE Alu 1 298 -20 1720 65 8 32 chr1 52537252 52537500 -229656164 - AluY SINE Alu -69 242 1 330 279 62 16 chr1 52537539 52537668 -229655996 + MIR SINE MIR 52 186 -76 2818 29 0 3 chr1 52537675 52537990 -229655674 - AluYb8 SINE Alu 0 318 5 1638 166 20 43 chr1 52538008 52538309 -229655355 + AluJo SINE Alu 1 294 -18 2106 100 78 0 chr1 52539089 52539370 -229654294 - AluSp SINE Alu -10 303 1 1699 240 35 59 chr1 52539774 52539951 -229653713 + MER74B LTR ERVL 58 238 -384 1393 175 106 18 chr1 52539951 52540225 -229653439 - AluJo SINE Alu -14 298 1 1699 240 35 59 chr1 52540225 52540626 -229653038 + MER74B LTR ERVL 238 622 0 1346 159 64 9 chr1 52541361 52541435 -229652229 + AluJo SINE Alu 45 113 -199 2105 116 10 0 chr1 52541435 52541727 -229651937 + AluSx SINE Alu 1 295 -17 1346 159 64 9 chr1 52541727 52541885 -229651779 + AluJo SINE Alu 113 290 -22 2287 90 23 0 chr1 52542108 52542407 -229651257 + AluSc SINE Alu 1 306 -3 2112 64 50 7 chr1 52542688 52542968 -229650696 + AluSg SINE Alu 1 292 -18 2192 60 8 125 chr1 52542995 52543347 -229650317 - AluY SINE Alu 0 311 1 1864 120 67 23 chr1 52543445 52543744 -229649920 - AluJb SINE Alu 0 312 1 720 264 18 66 chr1 52543896 52544091 -229649573 + MIR SINE MIR 4 188 -74 2361 74 0 3 chr1 52544091 52544387 -229649277 + AluSg SINE Alu 1 295 -15 720 264 18 66 chr1 52544387 52544418 -229649246 + MIR SINE MIR 188 219 -43 32 57 0 0 chr1 52545692 52545745 -229647919 + GC_rich Low_complexity Low_complexity 1 53 0 2464 55 0 0 chr1 52546099 52546388 -229647276 + AluY SINE Alu 1 289 -22 2006 128 57 0 chr1 52546404 52546686 -229646978 + AluSx SINE Alu 1 298 -14 647 185 206 0 chr1 52546756 52546902 -229646762 + MIR SINE MIR 19 194 -68 449 288 309 5 chr1 52548570 52548955 -229644709 + L2 LINE L2 1064 1565 -1749 354 248 59 20 chr1 52549124 52549225 -229644439 - MIR SINE MIR -151 111 7 206 292 340 21 chr1 52549226 52549543 -229644121 + L2 LINE L2 1637 1852 -1462 1672 106 158 0 chr1 52549543 52549797 -229643867 + AluSg SINE Alu 1 294 -16 206 292 340 21 chr1 52549797 52549990 -229643674 + L2 LINE L2 1852 2310 -1004 851 187 0 0 chr1 52550035 52550169 -229643495 - AluSq/x SINE Alu -178 134 1 280 262 95 119 chr1 52550169 52550421 -229643243 + L2 LINE L2 2522 2767 -547 2075 116 34 7 chr1 52550465 52550757 -229642907 - AluSx SINE Alu -12 300 1 216 288 121 0 chr1 52551032 52551098 -229642566 + L2 LINE L2 3239 3312 -1 2336 94 7 0 chr1 52551413 52551710 -229641954 - AluSx SINE Alu -13 299 1 455 316 57 79 chr1 52552622 52552850 -229640814 + L2 LINE L2 3050 3272 0 251 277 123 4 chr1 52553326 52553436 -229640228 + MIR SINE MIR 30 143 -65 558 329 182 40 chr1 52556009 52556412 -229637252 - L2 LINE L2 -4 3268 2924 2141 112 20 0 chr1 52556412 52556706 -229636958 + AluSq SINE Alu 1 300 -13 558 329 182 40 chr1 52556706 52557046 -229636618 - L2 LINE L2 -348 2924 2634 1424 165 94 22 chr1 52557046 52557313 -229636351 + AluJo SINE Alu 1 286 -26 558 329 182 40 chr1 52557313 52557481 -229636183 - L2 LINE L2 -638 2634 2220 684 158 44 9 chr1 52557539 52557653 -229636011 - FRAM SINE Alu -16 160 43 33 0 0 0 chr1 52559419 52559452 -229634212 + AT_rich Low_complexity Low_complexity 1 33 0 2495 89 0 0 chr1 52561164 52561477 -229632187 + AluSq SINE Alu 1 313 0 2012 122 3 7 chr1 52561839 52562134 -229631530 - AluSx SINE Alu -18 294 1 291 267 10 0 chr1 52563031 52563132 -229630532 + L1ME3A LINE L1 2208 2309 -4087 2121 101 28 3 chr1 52563132 52563420 -229630244 - AluSg SINE Alu -15 295 1 1461 162 121 15 chr1 52563422 52563687 -229629977 - AluSg SINE Alu -17 293 1 1213 239 24 72 chr1 52563691 52563946 -229629718 + L1ME3A LINE L1 4544 4765 -1450 1732 136 24 0 chr1 52563946 52564197 -229629467 + AluJb SINE Alu 42 298 -14 1213 239 24 72 chr1 52564197 52564443 -229629221 + L1ME3A LINE L1 4765 5021 -1194 1678 201 17 0 chr1 52564443 52564731 -229628933 + AluJo SINE Alu 1 293 -19 930 211 122 36 chr1 52564743 52565047 -229628617 + L1ME3A LINE L1 5839 6168 -71 407 127 0 0 chr1 52565185 52565240 -229628424 - AluJo SINE Alu -25 287 233 927 172 33 0 chr1 52565240 52565391 -229628273 - AluJo SINE Alu -128 184 29 567 122 128 27 chr1 52565391 52565539 -229628125 + L1MB3 LINE L1 5990 6152 -31 1703 141 12 0 chr1 52566144 52566393 -229627271 + AluJb SINE Alu 1 252 -60 347 125 0 7 chr1 52566393 52566442 -229627222 - AluJ/F(R)AM SINE Alu -125 186 144 687 249 86 30 chr1 52567495 52567728 -229625936 - MIR SINE MIR -8 254 9 194 256 188 34 chr1 52567777 52567894 -229625770 + L2 LINE L2 3179 3313 0 1188 124 0 0 chr1 52567938 52568091 -229625573 + AluSx SINE Alu 5 157 -155 1459 171 0 0 chr1 52568091 52568307 -229625357 - AluSx SINE Alu -96 216 1 22 35 0 0 chr1 52568310 52568339 -229625325 + AT_rich Low_complexity Low_complexity 1 29 0 376 283 36 22 chr1 52568706 52568844 -229624820 + MIR3 SINE MIR 3 142 -66 304 306 103 6 chr1 52568885 52569052 -229624612 - MIR SINE MIR -44 218 38 2061 141 10 3 chr1 52569412 52569718 -229623946 + AluSx SINE Alu 1 308 -4 880 268 31 4 chr1 52570432 52570660 -229623004 - MIR SINE MIR -3 259 26 682 158 255 84 chr1 52570664 52570962 -229622702 + MER4C LTR ERV1 1 349 -315 2283 100 17 0 chr1 52571075 52571376 -229622288 - AluSg SINE Alu -4 306 1 1608 152 54 22 chr1 52571385 52571662 -229622002 - AluJb SINE Alu -26 286 1 767 155 52 13 chr1 52571662 52571817 -229621847 + MER4C LTR ERV1 305 465 0 2335 87 3 10 chr1 52573718 52574017 -229619647 - AluSq SINE Alu -16 297 1 831 138 0 43 chr1 52574192 52574330 -229619334 + FLAM_C SINE Alu 2 133 0 915 145 0 15 chr1 52575330 52575461 -229618203 + FLAM_C SINE Alu 1 129 -14 26 0 0 0 chr1 52575461 52575487 -229618177 + AT_rich Low_complexity Low_complexity 1 26 0 609 267 102 15 chr1 52575499 52575705 -229617959 - MIR SINE MIR -30 232 9 2439 108 0 13 chr1 52576330 52576646 -229617018 - AluSx SINE Alu 0 312 1 717 178 15 139 chr1 52576859 52577061 -229616603 - AluJo SINE Alu -15 297 121 1605 166 35 28 chr1 52577135 52577424 -229616240 + AluJo SINE Alu 7 297 -15 2233 105 10 7 chr1 52577711 52578015 -229615649 + AluSx SINE Alu 2 306 -6 534 254 262 39 chr1 52578220 52578620 -229615044 + L2 LINE L2 1616 1926 -1388 1826 183 7 0 chr1 52578620 52578921 -229614743 + AluJo SINE Alu 3 305 -7 534 254 262 39 chr1 52578921 52579135 -229614529 + L2 LINE L2 1926 2367 -947 526 164 137 55 chr1 52579136 52579230 -229614434 + ORSL DNA AcHobo 1 86 -189 2096 152 0 0 chr1 52579230 52579540 -229614124 + AluSx SINE Alu 1 310 -2 526 164 137 55 chr1 52579540 52579628 -229614036 + ORSL DNA AcHobo 86 198 -77 436 143 0 36 chr1 52579702 52579786 -229613878 + AluS SINE Alu 225 305 -7 2191 89 22 35 chr1 52579858 52580173 -229613491 - AluY SINE Alu 0 311 1 1888 157 14 3 chr1 52580423 52580716 -229612948 - AluJb SINE Alu -16 296 1 415 290 166 32 chr1 52580830 52581488 -229612176 + L2 LINE L2 2360 3091 -181 1948 153 0 14 chr1 52581581 52581876 -229611788 - AluJb SINE Alu -17 295 5 341 234 210 42 chr1 52581965 52582132 -229611532 + L1ME2 LINE L1 5907 6101 -63 2350 101 0 10 chr1 52582170 52582478 -229611186 - AluSq SINE Alu -8 305 1 2199 118 20 0 chr1 52582506 52582812 -229610852 - AluSx SINE Alu 0 312 1 245 210 49 28 chr1 52582944 52583016 -229610648 + MIR SINE MIR 88 163 -45 596 311 38 0 chr1 52583558 52583746 -229609918 - MIR SINE MIR 0 262 66 263 186 0 0 chr1 52584754 52584797 -229608867 + L2 LINE L2 3221 3263 -9 203 152 22 0 chr1 52586132 52586178 -229607486 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 224 262 16 0 chr1 52586204 52586265 -229607399 + (CGGGG)n Simple_repeat Simple_repeat 3 64 0 384 322 49 0 chr1 52586672 52586815 -229606849 + MIR SINE MIR 98 247 -15 609 208 107 6 chr1 52586830 52586989 -229606675 - MIR SINE MIR -13 249 75 349 76 0 165 chr1 52586995 52587028 -229606636 + LTR26B LTR ERV1 3 40 -491 1820 150 28 3 chr1 52587028 52587314 -229606350 + AluJb SINE Alu 1 293 -19 2613 40 3 0 chr1 52587319 52587617 -229606047 + AluY SINE Alu 1 299 -12 349 76 0 165 chr1 52587617 52587656 -229606008 + LTR26B LTR ERV1 44 68 -463 1941 100 4 0 chr1 52587656 52587915 -229605749 + AluSx SINE Alu 39 298 -14 373 282 13 47 chr1 52587929 52588078 -229605586 + L1ME LINE L1 10 153 -5917 229 222 93 0 chr1 52588525 52588579 -229605085 + L1ME LINE L1 517 575 -5495 1592 183 36 7 chr1 52588602 52588881 -229604783 - AluJb SINE Alu -25 287 1 2064 159 0 0 chr1 52588949 52589250 -229604414 - AluJo SINE Alu -11 301 1 22 0 0 0 chr1 52589250 52589272 -229604392 + AT_rich Low_complexity Low_complexity 1 22 0 1048 165 6 11 chr1 52589356 52589369 -229604295 + AluJb SINE Alu 120 132 -180 1877 156 31 0 chr1 52589369 52589657 -229604007 + AluJb SINE Alu 1 297 -15 1048 165 6 11 chr1 52589657 52589819 -229603845 + AluJb SINE Alu 132 294 -18 2065 132 3 6 chr1 52589821 52590132 -229603532 + AluSg SINE Alu 1 310 0 1857 134 7 24 chr1 52590238 52590528 -229603136 + AluJo SINE Alu 11 295 -17 252 192 26 64 chr1 52590530 52590608 -229603056 + MLT1E2 LTR MaLR 33 107 -519 4755 28 0 0 chr1 52590629 52591136 -229602528 - SVA Other Other 0 1386 880 1626 220 27 86 chr1 52591238 52591564 -229602100 - L1M4 LINE L1 -1953 4193 3849 2139 103 37 0 chr1 52591564 52591864 -229601800 - AluSx SINE Alu -1 311 1 1626 220 27 86 chr1 52591864 52591976 -229601688 - L1M4 LINE L1 -2297 3849 3732 2045 139 0 3 chr1 52591976 52592271 -229601393 - AluSx SINE Alu -18 294 1 1626 220 27 86 chr1 52592271 52592329 -229601335 - L1M4 LINE L1 -2414 3732 3672 2226 63 0 0 chr1 52592329 52592598 -229601066 - AluY SINE Alu -16 295 27 1626 220 27 86 chr1 52592598 52592726 -229600938 - L1M4 LINE L1 -2474 3672 3604 1784 70 0 46 chr1 52592726 52592967 -229600697 - AluSq SINE Alu 0 313 84 2432 17 7 17 chr1 52592971 52593259 -229600405 - AluY SINE Alu 0 311 27 1448 128 26 15 chr1 52593259 52593532 -229600132 - L1MA4 LINE L1 -8 6292 6017 2400 69 13 10 chr1 52593534 52593838 -229599826 - AluY SINE Alu -6 305 1 2332 93 7 3 chr1 52593838 52594139 -229599525 - AluSp SINE Alu -11 302 1 963 158 56 36 chr1 52594165 52594361 -229599303 + MER20 DNA MER1_type 19 218 -1 2259 117 7 0 chr1 52594419 52594717 -229598947 - AluSx SINE Alu -12 300 1 666 255 40 50 chr1 52594732 52594828 -229598836 - L1M4 LINE L1 -2734 3412 3317 593 212 217 16 chr1 52594828 52595012 -229598652 + MER58A DNA MER1_type 4 224 0 666 255 40 50 chr1 52595012 52595213 -229598451 - L1M4 LINE L1 -2829 3317 3118 1027 155 44 129 chr1 52595226 52595348 -229598316 - MER65A LTR ERV1 0 445 314 2026 152 3 10 chr1 52595348 52595658 -229598006 - AluJb SINE Alu -4 308 1 1027 155 44 129 chr1 52595658 52595877 -229597787 - MER65A LTR ERV1 -131 314 133 1042 189 27 112 chr1 52595878 52595983 -229597681 - MER66A LTR ERV1 -1 477 365 1797 178 0 0 chr1 52595983 52596264 -229597400 - AluJo SINE Alu -21 291 11 1042 189 27 112 chr1 52596264 52596496 -229597168 - MER66A LTR ERV1 -113 365 169 231 256 310 16 chr1 52596472 52596601 -229597063 - MER41B LTR ERV1 -295 340 174 * 2075 152 0 43 chr1 52596656 52596700 -229596964 - MER65A-int LTR ERV1 -1 6675 6631 1891 148 14 0 chr1 52596700 52596984 -229596680 + AluSx SINE Alu 1 288 -24 2075 152 0 43 chr1 52596984 52597307 -229596357 - MER65A-int LTR ERV1 -45 6631 6324 2621 41 0 0 chr1 52597382 52597676 -229595988 - AluY SINE Alu -17 294 1 261 216 0 0 chr1 52597641 52597692 -229595972 - AluSg/x SINE Alu -132 170 120 437 239 83 53 chr1 52597694 52597736 -229595928 - LOR1-int LTR ERV1 -2874 3802 3763 2386 101 0 6 chr1 52597736 52598050 -229595614 - AluSp SINE Alu -7 306 1 437 239 83 53 chr1 52598050 52598087 -229595577 - LOR1-int LTR ERV1 -2913 3763 3729 1650 186 41 0 chr1 52598087 52598382 -229595282 - AluJo SINE Alu -5 307 1 437 239 83 53 chr1 52598382 52598553 -229595111 - LOR1-int LTR ERV1 -2947 3729 3565 1977 122 27 3 chr1 52598553 52598847 -229594817 - AluSg SINE Alu -9 301 1 437 239 83 53 chr1 52598847 52598973 -229594691 - LOR1-int LTR ERV1 -3111 3565 1623 26 0 0 0 chr1 52598998 52599024 -229594640 + AT_rich Low_complexity Low_complexity 1 26 0 268 186 0 0 chr1 52599085 52599128 -229594536 + MSTA LTR MaLR 6 48 -380 * 1021 84 155 70 chr1 52599112 52599146 -229594518 + MSTA LTR MaLR 164 194 -234 1873 113 36 43 chr1 52599146 52599448 -229594216 + AluSg SINE Alu 1 300 -10 1021 84 155 70 chr1 52599448 52599626 -229594038 + MSTA LTR MaLR 194 394 -34 2340 77 0 0 chr1 52599626 52599925 -229593739 - AluY SINE Alu -12 299 1 204 125 0 0 chr1 52599935 52599967 -229593697 + (T)n Simple_repeat Simple_repeat 1 32 0 1270 137 26 31 chr1 52600007 52600234 -229593430 - THE1B LTR MaLR -138 226 1 329 161 37 49 chr1 52600310 52600391 -229593273 - AluSp/q SINE Alu -4 299 220 * 1379 169 47 76 chr1 52600390 52600524 -229593140 - THE1C LTR MaLR -28 347 211 7448 78 6 5 chr1 52600524 52601492 -229592172 - LTR5 LTR ERVK 0 969 1 1379 169 47 76 chr1 52601492 52601689 -229591975 - THE1C LTR MaLR -164 211 24 2228 79 0 16 chr1 52601689 52601992 -229591672 + AluY SINE Alu 1 298 -13 306 0 0 0 chr1 52602127 52602161 -229591503 + (CA)n Simple_repeat Simple_repeat 1 34 0 216 311 8 16 chr1 52602269 52602391 -229591273 + (CA)n Simple_repeat Simple_repeat 1 121 0 288 252 19 48 chr1 52602582 52602685 -229590979 + MIR3 SINE MIR 95 194 -14 235 202 64 46 chr1 52603085 52603194 -229590470 + L2 LINE L2 712 822 -2492 2005 88 39 7 chr1 52603324 52603609 -229590055 - AluSc SINE Alu -15 294 1 626 284 34 29 chr1 52603609 52603817 -229589847 - MIR SINE MIR -52 210 2 226 405 78 0 chr1 52603929 52604161 -229589503 + L2 LINE L2 1037 1286 -2028 528 279 152 7 chr1 52604218 52604508 -229589156 + L2 LINE L2 1686 2017 -1297 288 320 113 68 chr1 52604801 52605110 -229588554 + L2 LINE L2 2947 3269 -3 194 313 46 30 chr1 52607845 52607976 -229585688 + MIR3 SINE MIR 4 136 -72 199 333 83 8 chr1 52608073 52608193 -229585471 - L2 LINE L2 -143 3129 3001 186 286 48 0 chr1 52608662 52608725 -229584939 - L2 LINE L2 -360 2954 2889 180 247 45 79 chr1 52609629 52609718 -229583946 + L3 LINE CR1 1298 1383 -194 806 263 18 13 chr1 52609744 52609968 -229583696 + MIR SINE MIR 2 226 -36 201 158 0 26 chr1 52610323 52610361 -229583303 + G-rich Low_complexity Low_complexity 1 37 0 2439 74 3 0 chr1 52610581 52610890 -229582774 + AluSp SINE Alu 1 310 -3 222 37 0 0 chr1 52612263 52612290 -229581374 + (AGGTG)n Simple_repeat Simple_repeat 3 29 0 1620 145 40 4 chr1 52615510 52615786 -229577878 + AluJb SINE Alu 27 312 0 198 0 0 0 chr1 52616663 52616685 -229576979 + (CTGGGG)n Simple_repeat Simple_repeat 6 27 0 279 229 62 21 chr1 52616901 52616997 -229576667 - MIR3 SINE MIR -106 102 3 1605 150 121 19 chr1 52617218 52617525 -229576139 - MER44D DNA MER2_type 0 609 2 967 190 43 9 chr1 52617540 52617751 -229575913 - MIR SINE MIR -1 261 44 688 243 64 5 chr1 52617768 52617970 -229575694 + MIR SINE MIR 41 254 -8 184 266 160 0 chr1 52620874 52620968 -229572696 + L2 LINE L2 3160 3268 -4 278 310 166 14 chr1 52621226 52621371 -229572293 + MIR SINE MIR 80 246 -16 1002 136 7 0 chr1 52621371 52621526 -229572138 - AluSg/x SINE Alu -22 290 135 284 244 78 35 chr1 52622184 52622299 -229571365 + L2 LINE L2 2940 3059 -213 204 299 140 37 chr1 52623663 52623830 -229569834 + L2 LINE L2 2826 3021 -251 2374 75 0 3 chr1 52623830 52624138 -229569526 + AluY SINE Alu 1 307 -4 204 299 140 37 chr1 52624138 52624184 -229569480 + L2 LINE L2 3021 3061 -211 270 360 65 20 chr1 52625007 52625160 -229568504 - MIR3 SINE MIR -15 193 34 2542 53 0 0 chr1 52625479 52625783 -229567881 + AluY SINE Alu 1 304 -7 2323 90 6 0 chr1 52626185 52626496 -229567168 - AluSp SINE Alu 0 313 1 597 212 0 34 chr1 52627274 52627392 -229566272 - MER81 DNA DNA 0 114 1 238 270 16 16 chr1 52627613 52627676 -229565988 + CT-rich Low_complexity Low_complexity 3 65 0 4799 150 26 24 chr1 52627681 52628690 -229564974 - L1MB4 LINE L1 -2 6178 5172 255 174 0 22 chr1 52628698 52628744 -229564920 - FAM SINE Alu -8 171 127 1322 151 5 5 chr1 52628744 52628956 -229564708 - AluJo SINE Alu -92 220 9 411 152 61 0 chr1 52628999 52629065 -229564599 - AluJ/FRAM SINE Alu -20 292 223 412 255 184 0 chr1 52629071 52629212 -229564452 + MIR SINE MIR 96 262 0 1980 151 0 3 chr1 52629560 52629858 -229563806 + AluJb SINE Alu 1 297 -15 668 176 38 23 chr1 52630812 52630943 -229562721 - AluJo SINE Alu -178 134 2 216 232 36 18 chr1 52632596 52632652 -229561012 + MIR SINE MIR 201 257 -5 1915 133 10 7 chr1 52632983 52633291 -229560373 + AluJo SINE Alu 1 309 -3 2094 92 3 24 chr1 52633944 52634239 -229559425 - AluSg SINE Alu -21 289 1 199 333 13 27 chr1 52634313 52634388 -229559276 + L2 LINE L2 3194 3267 -5 665 301 29 42 chr1 52634708 52634947 -229558717 - MIR SINE MIR -3 259 24 2280 94 3 0 chr1 52635455 52635754 -229557910 - AluSx SINE Alu -12 300 1 967 258 12 27 chr1 52635808 52636064 -229557600 - MIR SINE MIR -2 260 9 2005 112 7 7 chr1 52638918 52639233 -229554431 + AluSx SINE Alu 1 315 0 316 307 86 7 chr1 52639810 52639950 -229553714 + L3 LINE CR1 1355 1505 -72 1031 162 0 32 chr1 52640308 52640478 -229553186 - AluSg/x SINE Alu -11 301 136 2075 84 17 14 chr1 52640478 52640775 -229552889 - AluSx SINE Alu -14 298 1 1031 162 0 32 chr1 52640775 52640789 -229552875 - AluSg/x SINE Alu -176 136 123 187 365 0 14 chr1 52641096 52641170 -229552494 - MER5A DNA MER1_type -3 186 114 784 247 39 0 chr1 52641259 52641441 -229552223 - MER5A DNA MER1_type 0 189 1 296 300 73 9 chr1 52641481 52641591 -229552073 - MIR3 SINE MIR -86 122 6 281 350 61 18 chr1 52641742 52641905 -229551759 - MIR SINE MIR -61 201 32 189 232 54 18 chr1 52641932 52641988 -229551676 - L2 LINE L2 -5 3308 3251 * 1090 185 38 0 chr1 52641956 52642167 -229551497 - MIR SINE MIR -25 237 19 195 268 0 0 chr1 52642593 52642634 -229551030 - L2 LINE L2 -8 3305 3265 805 167 0 0 chr1 52642662 52642782 -229550882 + FLAM_C SINE Alu 2 121 -22 226 329 86 0 chr1 52642792 52642862 -229550802 - L2 LINE L2 -89 3183 3108 2259 101 3 0 chr1 52642952 52643260 -229550404 + AluSc SINE Alu 1 309 0 332 228 51 0 chr1 52643315 52643394 -229550270 - L2 LINE L2 -4 3268 3186 222 62 0 0 chr1 52643910 52643942 -229549722 + (CA)n Simple_repeat Simple_repeat 2 33 0 210 71 0 0 chr1 52646211 52646239 -229547425 + (T)n Simple_repeat Simple_repeat 1 28 0 2328 91 3 0 chr1 52646690 52646998 -229546666 + AluSx SINE Alu 1 309 -3 198 304 65 11 chr1 52648178 52648270 -229545394 + L2 LINE L2 3158 3254 -18 2250 109 13 7 chr1 52648500 52648804 -229544860 - AluSx SINE Alu -6 306 1 368 239 16 65 chr1 52649045 52649229 -229544435 + MIR SINE MIR 12 191 -63 2496 77 3 0 chr1 52649230 52649529 -229544135 + AluSp SINE Alu 1 300 -13 400 253 73 79 chr1 52649690 52649882 -229543782 - MIR SINE MIR -55 207 15 345 176 176 0 chr1 52649889 52649974 -229543690 + L1ME4a LINE L1 6006 6105 -16 22 0 0 0 chr1 52650188 52650210 -229543454 + AT_rich Low_complexity Low_complexity 1 22 0 2684 27 0 3 chr1 52650220 52650520 -229543144 + AluY SINE Alu 1 299 -12 343 315 0 57 chr1 52650587 52650744 -229542920 + MIR SINE MIR 64 210 -52 347 317 134 61 chr1 52650749 52651159 -229542505 - L2 LINE L2 0 3272 2833 1011 213 54 67 chr1 52652085 52652324 -229541340 - MIR SINE MIR -24 238 3 1412 248 123 37 chr1 52653398 52653653 -229540011 - Charlie1a DNA MER1_type -2257 504 272 2124 155 0 0 chr1 52653653 52653957 -229539707 + AluSx SINE Alu 1 304 -8 1412 248 123 37 chr1 52653957 52654165 -229539499 - Charlie1a DNA MER1_type -2489 272 1 221 208 113 0 chr1 52654451 52654504 -229539160 + L2 LINE L2 3162 3220 -52 1290 160 10 0 chr1 52654908 52655108 -229538556 - AluJb SINE Alu -26 286 85 196 301 108 0 chr1 52655132 52655215 -229538449 + L2 LINE L2 3170 3261 -11 2365 101 10 0 chr1 52655271 52655579 -229538085 + AluSx SINE Alu 1 311 -1 297 136 0 0 chr1 52656144 52656188 -229537476 - FLAM SINE Alu -7 126 83 1788 145 30 0 chr1 52656407 52656676 -229536988 + AluJb SINE Alu 1 277 -35 287 287 128 0 chr1 52657173 52657267 -229536397 + L2 LINE L2 3163 3268 -4 1882 145 14 0 chr1 52657466 52657742 -229535922 - AluJb SINE Alu -32 280 1 1470 221 30 3 chr1 52657815 52658146 -229535518 - MER58B DNA MER1_type -1 340 1 809 295 27 18 chr1 52658233 52658457 -229535207 + MIR SINE MIR 21 246 -16 193 301 53 53 chr1 52659118 52659231 -229534433 + L2 LINE L2 2709 2821 -493 328 271 98 16 chr1 52659364 52659486 -229534178 + L2 LINE L2 3141 3272 0 417 296 35 98 chr1 52659573 52659860 -229533804 + L3b LINE CR1 1110 1378 -205 22 35 0 0 chr1 52660233 52660262 -229533402 + AT_rich Low_complexity Low_complexity 1 29 0 1172 193 81 0 chr1 52660266 52660489 -229533175 - MIR SINE MIR -11 251 11 566 259 23 8 chr1 52660638 52660769 -229532895 + MIR SINE MIR 130 262 0 563 249 112 43 chr1 52661364 52661597 -229532067 + MIR SINE MIR 7 255 -7 239 284 140 138 chr1 52661719 52662068 -229531596 + L2 LINE L2 2919 3268 -4 251 229 0 49 chr1 52662467 52662528 -229531136 + MIR SINE MIR 204 261 -1 232 278 49 111 chr1 52662556 52662615 -229531049 + MIR3 SINE MIR 37 98 -110 2401 84 0 0 chr1 52662615 52662899 -229530765 - AluSx SINE Alu -17 295 12 232 278 49 111 chr1 52662899 52663001 -229530663 + MIR3 SINE MIR 98 188 -20 355 300 101 74 chr1 52663464 52663823 -229529841 - L2 LINE L2 0 3272 2897 2345 107 0 0 chr1 52663823 52664121 -229529543 + AluSx SINE Alu 1 298 -14 355 300 101 74 chr1 52664121 52664218 -229529446 - L2 LINE L2 -375 2897 2804 1380 85 134 0 chr1 52664254 52664455 -229529209 - MER30 DNA MER1_type -2 228 1 575 323 86 13 chr1 52665112 52665344 -229528320 - MIR SINE MIR 0 262 14 1976 144 17 0 chr1 52667298 52667597 -229526067 - AluJb SINE Alu -8 304 1 235 243 186 0 chr1 52667948 52668018 -229525646 + L3 LINE CR1 1381 1463 -114 263 283 0 0 chr1 52668169 52668229 -229525435 + MIR SINE MIR 182 241 -21 243 250 119 69 chr1 52668251 52668411 -229525253 - MIR3 SINE MIR -8 200 33 2658 61 0 3 chr1 52668783 52669095 -229524569 + AluY SINE Alu 1 311 0 411 289 40 20 chr1 52669890 52670042 -229523622 + MIR3 SINE MIR 39 193 -15 249 213 0 0 chr1 52670818 52670865 -229522799 - L2 LINE L2 0 3313 3267 2217 114 23 0 chr1 52672053 52672359 -229521305 - AluSp SINE Alu 0 313 1 390 303 70 32 chr1 52672842 52673027 -229520637 - MIR SINE MIR -30 232 41 200 174 22 22 chr1 52673427 52673473 -229520191 + MIR SINE MIR 102 147 -61 1840 110 51 0 chr1 52674105 52674359 -229519305 + AluSq SINE Alu 47 313 0 336 230 68 27 chr1 52674377 52674488 -229519176 + MIR SINE MIR 19 153 -62 198 267 0 0 chr1 52675793 52675838 -229517826 - L2 LINE L2 -7 3306 3262 345 211 3 0 chr1 52675950 52676029 -229517635 + MIR SINE MIR 11 91 -117 215 228 0 141 chr1 52677095 52677187 -229516477 + L2 LINE L2 3170 3248 -24 437 197 20 132 chr1 52677207 52677359 -229516305 - MIR3 SINE MIR -14 194 60 25 65 0 0 chr1 52678538 52678584 -229515080 + GC_rich Low_complexity Low_complexity 1 46 0 297 276 138 0 chr1 52678868 52678955 -229514709 + L2 LINE L2 3174 3272 0 2201 124 9 12 chr1 52679540 52679878 -229513786 + L1PA15 LINE L1 5825 6161 -4 587 249 106 21 chr1 52680235 52680678 -229512986 - LTR33 LTR ERVL 0 521 22 471 263 39 6 chr1 52680726 52680905 -229512759 - L1M4 LINE L1 -3190 2956 2772 294 247 14 0 chr1 52681552 52681625 -229512039 + MIR SINE MIR 74 147 -61 364 277 45 11 chr1 52682093 52682228 -229511436 + MIR SINE MIR 72 206 -56 196 380 28 0 chr1 52682263 52682334 -229511330 + L3 LINE CR1 1246 1318 -259 2073 121 48 0 chr1 52683145 52683435 -229510229 + AluSx SINE Alu 1 304 -8 308 177 0 65 chr1 52683501 52683563 -229510101 - L2 LINE L2 0 3272 3215 280 280 65 11 chr1 52683696 52683789 -229509875 - MIR3 SINE MIR -19 189 92 2234 88 32 3 chr1 52684538 52684823 -229508841 - AluSx SINE Alu -19 293 1 213 246 33 0 chr1 52684871 52684932 -229508732 - MIR SINE MIR -143 119 57 1716 165 4 8 chr1 52684937 52685203 -229508461 + AluSx SINE Alu 11 275 -37 513 0 0 0 chr1 52685215 52685272 -229508392 + (CAAG)n Simple_repeat Simple_repeat 2 58 0 337 238 25 25 chr1 52686439 52686519 -229507145 + MIR SINE MIR 68 147 -61 364 313 11 67 chr1 52686536 52686594 -229507070 + MER5A DNA MER1_type 19 79 -110 418 96 96 0 chr1 52686594 52686667 -229506997 - MADE1 DNA Mariner 0 80 1 364 313 11 67 chr1 52686667 52686787 -229506877 + MER5A DNA MER1_type 79 187 -2 593 299 46 0 chr1 52687266 52687440 -229506224 - MIR SINE MIR -45 217 36 233 176 24 153 chr1 52687461 52687497 -229506167 + MIR SINE MIR 118 138 -124 2390 87 6 3 chr1 52687497 52687809 -229505855 + AluSq SINE Alu 1 313 0 233 176 24 153 chr1 52687809 52687857 -229505807 + MIR SINE MIR 138 191 -71 189 303 112 45 chr1 52688270 52688359 -229505305 + L3 LINE CR1 710 804 -773 491 330 90 41 chr1 52688562 52689028 -229504636 + L3 LINE CR1 1044 1532 -45 1989 109 69 0 chr1 52689216 52689492 -229504172 - AluSc SINE Alu -14 295 1 2264 81 39 0 chr1 52689507 52689791 -229503873 - AluSx SINE Alu -17 295 1 2340 70 3 3 chr1 52689800 52690085 -229503579 - AluY SINE Alu -16 295 11 356 347 129 29 chr1 52690427 52690832 -229502832 - L2 LINE L2 -16 3256 2777 2170 130 10 0 chr1 52691321 52691620 -229502044 - AluSx SINE Alu -10 302 1 470 172 81 0 chr1 52691700 52691799 -229501865 + MIR SINE MIR 156 262 0 6359 113 98 34 chr1 52691813 52692746 -229500918 - Tigger3b DNA MER2_type -1798 1230 207 2066 145 0 7 chr1 52692746 52693042 -229500622 - AluJo SINE Alu -18 294 1 6359 113 98 34 chr1 52693042 52693264 -229500400 - Tigger3b DNA MER2_type -2821 207 1 658 287 234 12 chr1 52693571 52693905 -229499759 + L2 LINE L2 2903 3310 -3 205 365 104 0 chr1 52694144 52694240 -229499424 + L2 LINE L2 3159 3264 -8 453 221 157 0 chr1 52694443 52694583 -229499081 - L2 LINE L2 -4 3309 3148 468 281 10 85 chr1 52694705 52694904 -229498760 + MER5A DNA MER1_type 1 184 -5 490 266 43 69 chr1 52695045 52695233 -229498431 - MIR SINE MIR -73 189 7 2023 136 7 19 chr1 52696014 52696324 -229497340 + AluSx SINE Alu 1 306 -6 180 251 151 136 chr1 52697739 52697990 -229495674 + L2 LINE L2 3018 3272 0 1902 191 144 39 chr1 52698191 52698319 -229495345 + MLT1F1 LTR MaLR 1 114 -453 543 189 180 0 chr1 52698319 52698430 -229495234 + FLAM_A SINE Alu 1 131 -2 1902 191 144 39 chr1 52698430 52698814 -229494850 + MLT1F1 LTR MaLR 114 567 0 1147 157 0 0 chr1 52698911 52699083 -229494581 + FRAM SINE Alu 1 166 -10 524 251 49 77 chr1 52699453 52699636 -229494028 - MIR3 SINE MIR -13 195 18 2384 53 7 17 chr1 52700018 52700318 -229493346 + AluY SINE Alu 1 297 -14 278 363 27 54 chr1 52700550 52700883 -229492781 + L2 LINE L2 2464 2787 -527 252 86 0 0 chr1 52700902 52700937 -229492727 + (CA)n Simple_repeat Simple_repeat 2 36 0 364 293 60 40 chr1 52700948 52701098 -229492566 + L2 LINE L2 2899 3051 -221 477 216 250 17 chr1 52701706 52701882 -229491782 + L2 LINE L2 860 1076 -2238 699 176 71 109 chr1 52701885 52702011 -229491653 - MER58 DNA MER1_type -2191 229 114 2025 101 0 78 chr1 52702011 52702354 -229491310 + AluSx SINE Alu 1 319 0 699 176 71 109 chr1 52702354 52702464 -229491200 - MER58 DNA MER1_type -2306 114 1 3535 216 126 28 chr1 52702464 52702754 -229490910 + L2 LINE L2 1304 1564 -1750 1940 170 0 3 chr1 52702754 52703066 -229490598 - AluSx SINE Alu -1 311 1 3535 216 126 28 chr1 52703066 52703797 -229489867 + L2 LINE L2 1564 2425 -889 1035 185 108 77 chr1 52704381 52704706 -229488958 - MER46C DNA MER2_type -3 335 1 333 219 146 0 chr1 52705837 52705919 -229487745 + L2 LINE L2 3182 3275 -38 611 225 188 9 chr1 52705923 52706136 -229487528 + MIR SINE MIR 10 260 -2 26 101 0 0 chr1 52706304 52706393 -229487271 + AT_rich Low_complexity Low_complexity 1 89 0 1767 162 10 7 chr1 52707061 52707357 -229486307 - AluJo SINE Alu -15 297 1 1590 154 124 4 chr1 52707587 52707846 -229485818 + AluJo SINE Alu 1 290 -12 355 271 91 20 chr1 52707853 52708052 -229485612 - L1ME3A LINE L1 -215 5955 5743 3218 225 66 24 chr1 52708386 52708699 -229484965 - L1ME1 LINE L1 -5 6161 5863 1652 214 73 31 chr1 52708699 52709124 -229484540 + LTR47B LTR ERVL 1 443 0 3218 225 66 24 chr1 52709124 52709191 -229484473 - L1ME1 LINE L1 -303 5863 5800 252 86 0 0 chr1 52709191 52709226 -229484438 + (CA)n Simple_repeat Simple_repeat 2 36 0 3218 225 66 24 chr1 52709226 52709703 -229483961 - L1ME1 LINE L1 -366 5800 5267 305 125 35 138 chr1 52709703 52709791 -229483873 - L1M3 LINE L1 -425 5746 5657 2040 147 0 0 chr1 52709804 52710103 -229483561 - AluSx SINE Alu -9 303 5 877 182 216 0 chr1 52710109 52710285 -229483379 - AluJb SINE Alu -17 295 82 290 289 0 0 chr1 52710285 52710382 -229483282 - L1ME1 LINE L1 -1017 5129 5033 1723 174 3 7 chr1 52710391 52710684 -229482980 + AluSx SINE Alu 1 292 -20 1306 118 21 0 chr1 52710686 52710873 -229482791 + AluSg/x SINE Alu 112 302 -10 1442 191 52 10 chr1 52710874 52711183 -229482481 - L1ME1 LINE L1 -1129 5017 4696 369 143 0 0 chr1 52711287 52711343 -229482321 + (TG)n Simple_repeat Simple_repeat 1 56 0 578 300 25 10 chr1 52712026 52712226 -229481438 + MIR SINE MIR 12 214 -48 227 211 0 14 chr1 52712356 52712427 -229481237 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 253 250 16 16 chr1 52712837 52712901 -229480763 + MIR3 SINE MIR 112 175 -33 460 270 88 7 chr1 52713091 52713239 -229480425 - MLT1I LTR MaLR -249 160 1 182 136 296 0 chr1 52713738 52713782 -229479882 - L2 LINE L2 -2 3270 3214 * 590 260 71 31 chr1 52713780 52713976 -229479688 + MIR SINE MIR 16 219 -43 337 265 49 37 chr1 52714023 52714185 -229479479 + L1ME LINE L1 2 165 -5905 536 253 73 95 chr1 52714422 52715194 -229478470 + L1ME LINE L1 529 1319 -4942 2005 143 0 3 chr1 52715222 52715515 -229478149 + AluSx SINE Alu 1 292 -20 1306 118 21 0 chr1 52715517 52715704 -229477960 + AluSg/x SINE Alu 112 302 -10 2093 193 47 50 chr1 52715705 52716174 -229477490 - L1M4 LINE L1 -1129 5017 4549 1661 197 0 7 chr1 52716174 52716474 -229477190 + AluJo SINE Alu 6 303 -9 2093 193 47 50 chr1 52716474 52716558 -229477106 - L1M4 LINE L1 -1597 4549 4466 726 175 0 0 chr1 52716790 52716904 -229476760 + FLAM_C SINE Alu 22 135 -8 4055 103 42 15 chr1 52716904 52717516 -229476148 + L1MA5 LINE L1 5497 6125 -175 6464 19 0 0 chr1 52717526 52718219 -229475445 - L1PA3 LINE L1 0 6155 5463 2096 19 0 3 chr1 52718219 52718543 -229475121 + L1PA3 LINE L1 5152 5474 -681 1349 92 16 0 chr1 52718543 52718723 -229474941 + L1MA5 LINE L1 6111 6298 -2 2096 19 0 3 chr1 52718723 52718742 -229474922 + L1P1 LINE L1 5474 5492 -663 524 304 98 18 chr1 52720761 52720985 -229472679 + MIR SINE MIR 21 262 0 2616 97 21 34 chr1 52720991 52721043 -229472621 - THE1C LTR MaLR 0 375 324 3198 65 10 0 chr1 52721043 52721460 -229472204 - L1PA6 LINE L1 0 6154 5763 2616 97 21 34 chr1 52721460 52721787 -229471877 - THE1C LTR MaLR -51 324 1 288 234 139 15 chr1 52721992 52722129 -229471535 - L1ME4a LINE L1 -40 6081 5928 287 385 41 18 chr1 52722189 52722358 -229471306 + L2 LINE L2 2915 3087 -185 196 265 255 0 chr1 52722464 52722566 -229471098 + L2 LINE L2 3180 3307 -6 512 290 37 55 chr1 52722844 52723061 -229470603 - L3 LINE CR1 -432 1145 933 211 330 155 10 chr1 52723407 52723504 -229470160 + L2 LINE L2 3160 3270 -2 683 251 112 11 chr1 52723566 52723753 -229469911 + MIR SINE MIR 36 241 -21 203 281 18 0 chr1 52724026 52724083 -229469581 - L2 LINE L2 -3 3310 3253 * 1023 234 39 4 chr1 52724049 52724280 -229469384 - MIR SINE MIR -21 241 3 21 0 0 0 chr1 52724748 52724769 -229468895 + AT_rich Low_complexity Low_complexity 1 21 0 24 78 0 13 chr1 52725386 52725437 -229468227 + AT_rich Low_complexity Low_complexity 1 52 -24 2298 103 0 3 chr1 52725437 52725747 -229467917 + AluSg SINE Alu 1 309 -1 24 78 0 13 chr1 52725747 52725772 -229467892 + AT_rich Low_complexity Low_complexity 52 76 0 2200 117 3 3 chr1 52726494 52726801 -229466863 - AluSx SINE Alu -2 310 4 499 159 123 88 chr1 52727012 52727182 -229466482 - MER104 DNA MER2_type -4 176 1 1289 234 161 84 chr1 52727250 52727604 -229466060 + MER20B DNA MER1_type 23 348 -435 2227 91 3 14 chr1 52727604 52727901 -229465763 - AluSx SINE Alu -16 296 3 1289 234 161 84 chr1 52727901 52728250 -229465414 + MER20B DNA MER1_type 348 780 -3 2493 69 0 0 chr1 52728417 52728721 -229464943 - AluY SINE Alu -7 304 1 2064 109 0 0 chr1 52728986 52729253 -229464411 - AluSq SINE Alu -45 268 2 7937 34 24 0 chr1 52729307 52730226 -229463438 - L1PA4 LINE L1 -1 6154 5235 798 208 51 23 chr1 52730471 52730687 -229462977 - MER112 DNA MER1_type -38 222 1 1019 239 65 8 chr1 52730756 52731003 -229462661 - MIR SINE MIR 0 262 2 1046 240 0 0 chr1 52731205 52731401 -229462263 + MER58A DNA MER1_type 29 224 0 259 312 97 0 chr1 52732188 52732281 -229461383 - L3 LINE CR1 -31 1546 1445 381 265 51 10 chr1 52732982 52733080 -229460584 - L2 LINE L2 -49 3223 3122 206 315 45 34 chr1 52733122 52733211 -229460453 + L2 LINE L2 2898 2987 -285 * 209 266 6 107 chr1 52733206 52733375 -229460289 - L2 LINE L2 -1525 1789 1638 235 360 29 14 chr1 52733634 52733773 -229459891 - L2 LINE L2 -613 2701 2561 288 235 148 26 chr1 52733988 52734103 -229459561 + MIR3 SINE MIR 36 164 -44 280 222 102 82 chr1 52734186 52734331 -229459333 + MIR3 SINE MIR 46 179 -29 501 254 8 0 chr1 52734394 52734520 -229459144 + MIR SINE MIR 56 182 -80 23 0 0 0 chr1 52734892 52734915 -229458749 + GC_rich Low_complexity Low_complexity 1 23 0 340 209 77 44 chr1 52735332 52735423 -229458241 - MIR SINE MIR -90 172 79 321 289 209 24 chr1 52735893 52736104 -229457560 + L2 LINE L2 2897 3146 -167 2725 237 115 9 chr1 52736131 52736568 -229457096 - L2 LINE L2 -103 3210 2821 657 193 9 18 chr1 52736568 52736682 -229456982 - MER81 DNA DNA -1 113 1 2725 237 115 9 chr1 52736682 52737265 -229456399 - L2 LINE L2 -492 2821 2020 427 259 100 24 chr1 52737301 52737471 -229456193 + L3 LINE CR1 1260 1442 -135 289 273 40 57 chr1 52737620 52737847 -229455817 - L2 LINE L2 -219 3053 2831 1924 131 0 0 chr1 52738770 52739038 -229454626 - AluSx SINE Alu -14 298 31 180 0 0 0 chr1 52745344 52745364 -229448300 + (A)n Simple_repeat Simple_repeat 1 20 0 784 168 0 0 chr1 52745365 52745478 -229448186 + FLAM_C SINE Alu 2 114 -29 289 261 8 149 chr1 52745752 52745825 -229447839 - MIR SINE MIR -78 130 48 1967 141 0 7 chr1 52745825 52746123 -229447541 - AluSx SINE Alu -13 299 4 1844 133 21 4 chr1 52746124 52746403 -229447261 - AluSx SINE Alu 0 312 29 289 261 8 149 chr1 52746403 52746461 -229447203 - MIR SINE MIR -159 49 16 4196 146 17 46 chr1 52746515 52747280 -229446384 + L1MB7 LINE L1 5426 6168 -16 1960 130 46 3 chr1 52747497 52747782 -229445882 - AluJo SINE Alu -15 297 1 345 188 260 0 chr1 52748596 52748692 -229444972 - L2 LINE L2 0 3313 3193 269 346 103 19 chr1 52749097 52749204 -229444460 + L2 LINE L2 3139 3254 -18 1744 143 12 4 chr1 52749265 52749523 -229444141 + AluSx SINE Alu 1 260 -52 597 259 184 15 chr1 52749533 52749734 -229443930 + MIR SINE MIR 20 254 -8 200 300 50 67 chr1 52751144 52751264 -229442400 + L2 LINE L2 3196 3313 0 397 354 45 32 chr1 52752908 52753154 -229440510 + L2 LINE L2 3012 3260 -12 269 196 20 0 chr1 52754310 52754361 -229439303 + MIR3 SINE MIR 121 172 -36 290 248 90 60 chr1 52754611 52754744 -229438920 + MIR SINE MIR 65 201 -61 267 257 43 14 chr1 52757203 52757273 -229436391 - MIR SINE MIR -117 91 20 572 161 124 27 chr1 52757711 52757892 -229435772 - MLT1H LTR MaLR -2 547 340 448 202 71 10 chr1 52757951 52758050 -229435614 + MLT1H1 LTR MaLR 443 547 -8 2535 214 65 51 chr1 52758496 52759239 -229434425 - L1ME1 LINE L1 -9 6157 5405 304 192 14 41 chr1 52760290 52760363 -229433301 + L2 LINE L2 3202 3272 0 7897 36 9 0 chr1 52760387 52761755 -229431909 + L1PA5 LINE L1 4776 6152 -2 1506 174 0 0 chr1 52762268 52762503 -229431161 - AluJb SINE Alu -77 235 1 299 205 27 80 chr1 52762503 52762615 -229431049 - L1ME LINE L1 -598 5572 5467 262 208 139 0 chr1 52764098 52764170 -229429494 - L2 LINE L2 -18 3254 3173 483 251 112 28 chr1 52764177 52764356 -229429308 - L2 LINE L2 0 3313 3120 2069 131 7 3 chr1 52764378 52764676 -229428988 - AluSx SINE Alu -13 299 1 696 300 116 56 chr1 52764886 52765610 -229428054 - L2 LINE L2 -75 3238 2440 306 288 30 30 chr1 52765878 52766010 -229427654 + L2 LINE L2 3117 3248 -65 261 273 45 73 chr1 52766203 52766226 -229427438 + MIR SINE MIR 153 175 -87 2549 186 106 12 chr1 52766226 52766743 -229426921 + MLT1F1 LTR MaLR 2 567 0 261 273 45 73 chr1 52766743 52766829 -229426835 + MIR SINE MIR 175 259 -3 535 291 39 25 chr1 52767027 52767300 -229426364 + L1MC/D LINE L1 5476 5758 -474 198 0 0 0 chr1 52767480 52767502 -229426162 + (GA)n Simple_repeat Simple_repeat 1 22 0 243 103 0 0 chr1 52767502 52767541 -229426123 + (TG)n Simple_repeat Simple_repeat 1 39 0 581 272 52 12 chr1 52768982 52769190 -229424474 + MIR SINE MIR 46 258 -4 245 259 0 0 chr1 52769190 52769244 -229424420 + (CAT)n Simple_repeat Simple_repeat 1 54 0 384 291 62 116 chr1 52769462 52769509 -229424155 + L2 LINE L2 2897 2945 -327 3063 213 34 28 chr1 52769509 52769637 -229424027 + MER82 DNA MER2_type 2 128 -525 2424 78 0 3 chr1 52769637 52769931 -229423733 - AluSg SINE Alu -17 293 1 3063 213 34 28 chr1 52769931 52770450 -229423214 + MER82 DNA MER2_type 128 653 0 384 291 62 116 chr1 52770450 52770694 -229422970 + L2 LINE L2 2945 3172 -100 1775 144 6 80 chr1 52770696 52771022 -229422642 + AluJb SINE Alu 3 304 -8 928 164 148 26 chr1 52771024 52771213 -229422451 + MLT1A1 LTR MaLR 154 365 0 266 236 79 22 chr1 52771472 52771561 -229422103 + MLT1L LTR MaLR 520 613 -2 3233 160 65 24 chr1 52771917 52772388 -229421276 + MER6A DNA MER2_type 2 503 -362 1976 149 0 7 chr1 52772388 52772690 -229420974 - AluJo SINE Alu -12 300 1 3233 160 65 24 chr1 52772690 52772798 -229420866 + MER6A DNA MER2_type 503 605 0 559 249 51 28 chr1 52773318 52773495 -229420169 - MER112 DNA MER1_type -79 181 1 569 244 101 21 chr1 52774804 52775009 -229418655 + MIR SINE MIR 28 246 -16 24 32 0 0 chr1 52775673 52775704 -229417960 + AT_rich Low_complexity Low_complexity 1 31 0 387 344 138 40 chr1 52775749 52776147 -229417517 + L2 LINE L2 2824 3260 -12 2107 117 0 17 chr1 52776229 52776550 -229417114 + AluSx SINE Alu 1 312 0 4009 112 53 40 chr1 52776739 52777084 -229416580 - L1MA5A LINE L1 -10 6287 5929 1690 166 17 3 chr1 52777084 52777373 -229416291 - AluJo SINE Alu -17 295 3 4009 112 53 40 chr1 52777373 52777673 -229415991 - L1MA5A LINE L1 -368 5929 5634 258 301 187 24 chr1 52778359 52778525 -229415139 - L2 LINE L2 0 3272 3080 424 285 32 32 chr1 52778554 52778677 -229414987 - MIR SINE MIR -67 141 19 2076 115 0 31 chr1 52779249 52779572 -229414092 + AluSq SINE Alu 1 313 0 189 250 21 0 chr1 52779958 52780006 -229413658 + L2 LINE L2 3262 3310 -3 180 0 0 0 chr1 52780953 52780973 -229412691 + (A)n Simple_repeat Simple_repeat 1 20 0 1598 156 25 56 chr1 52781033 52781353 -229412311 + AluJb SINE Alu 1 310 -2 230 252 329 19 chr1 52781862 52782017 -229411647 + MIR SINE MIR 60 262 0 2288 108 3 7 chr1 52782490 52782797 -229410867 + AluSx SINE Alu 2 307 -5 192 97 0 0 chr1 52785566 52785597 -229408067 + (CGG)n Simple_repeat Simple_repeat 2 32 0 1271 208 256 58 chr1 52786025 52786142 -229407522 - L2 LINE L2 0 3313 3220 1028 167 16 16 chr1 52786142 52786328 -229407336 + MER53 DNA DNA 3 188 -1 1271 208 256 58 chr1 52786328 52786733 -229406931 - L2 LINE L2 -93 3220 2897 2229 115 3 0 chr1 52786733 52787091 -229406573 + AluSc SINE Alu 1 309 0 1271 208 256 58 chr1 52787091 52787485 -229406179 - L2 LINE L2 -416 2897 2203 447 277 60 42 chr1 52787685 52787851 -229405813 + MIR SINE MIR 2 170 -92 741 200 65 45 chr1 52787922 52788122 -229405542 - MER3 DNA MER1_type 0 209 6 220 232 37 37 chr1 52788818 52788900 -229404764 + MIR SINE MIR 85 166 -96 197 234 223 32 chr1 52789126 52789220 -229404444 - MIR SINE MIR -76 132 21 375 258 0 97 chr1 52789250 52789374 -229404290 + MIR SINE MIR 48 159 -103 418 222 30 9 chr1 52789374 52789535 -229404129 - MER45C DNA AcHobo 0 953 732 1306 242 0 30 chr1 52789657 52789926 -229403738 - MER45C DNA AcHobo -692 261 1 259 195 0 0 chr1 52789963 52790004 -229403660 + MIR SINE MIR 219 259 -3 382 276 0 64 chr1 52790287 52790443 -229403221 - MIR3 SINE MIR -62 146 1 473 256 44 31 chr1 52791334 52791494 -229402170 + MIR SINE MIR 28 189 -73 318 50 0 0 chr1 52792067 52792107 -229401557 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 40 0 0 chr1 52792201 52792226 -229401438 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 550 268 156 28 chr1 52792238 52792488 -229401176 - L2 LINE L2 -33 3280 2999 2490 262 52 57 chr1 52792509 52793992 -229399672 + L1MEc LINE L1 59 1656 -4740 3814 96 14 4 chr1 52793992 52794511 -229399153 + L1PA13 LINE L1 5640 6163 0 2490 262 52 57 chr1 52794511 52794522 -229399142 + L1MEc LINE L1 1656 1666 -4730 32001 99 15 61 chr1 52794572 52797960 -229395704 + L1PA7 LINE L1 12 2929 -3225 1225 35 0 0 chr1 52797960 52798101 -229395563 + L1PA6 LINE L1 6008 6149 -5 32001 99 15 61 chr1 52798101 52801180 -229392484 + L1PA7 LINE L1 2929 6147 -7 3751 136 16 5 chr1 52801168 52801815 -229391849 + L1 LINE L1 4395 5048 -1098 * 347 219 36 88 chr1 52801858 52801995 -229391669 - L2 LINE L2 -1107 2207 2078 315 304 103 47 chr1 52802779 52802936 -229390728 + L2 LINE L2 2857 3004 -268 16310 113 30 23 chr1 52802936 52803879 -229389785 - Tigger1 DNA MER2_type 0 2418 1483 1863 186 0 0 chr1 52803879 52804191 -229389473 - AluJb SINE Alu 0 312 1 16310 113 30 23 chr1 52804191 52805234 -229388430 - Tigger1 DNA MER2_type -935 1483 410 2075 130 0 0 chr1 52805234 52805519 -229388145 - AluSx SINE Alu -27 285 1 16310 113 30 23 chr1 52805519 52805932 -229387732 - Tigger1 DNA MER2_type -2008 410 1 315 304 103 47 chr1 52805932 52805988 -229387676 + L2 LINE L2 3004 3082 -190 252 218 35 0 chr1 52806084 52806171 -229387493 + CT-rich Low_complexity Low_complexity 2 91 0 1330 306 30 36 chr1 52806362 52807000 -229386664 - L1ME3A LINE L1 -219 5951 5318 2226 121 3 0 chr1 52807031 52807337 -229386327 - AluSg SINE Alu -1 309 3 1167 265 162 21 chr1 52807370 52808073 -229385591 - L1ME3A LINE L1 -880 5266 4465 920 276 84 51 chr1 52808085 52808596 -229385068 - L1MC4 LINE L1 -2 8040 7513 2287 96 7 0 chr1 52810106 52810398 -229383266 + AluSq SINE Alu 1 294 -19 439 219 104 67 chr1 52810712 52810876 -229382788 - L1MC4 LINE L1 -529 7513 7344 * 530 325 16 32 chr1 52810866 52811180 -229382484 - L1ME3A LINE L1 -1662 4484 4176 294 312 46 0 chr1 52811452 52811561 -229382103 - MIR SINE MIR -115 147 34 26 30 0 0 chr1 52811662 52811695 -229381969 + AT_rich Low_complexity Low_complexity 1 33 0 220 229 16 0 chr1 52811780 52811841 -229381823 - MIR SINE MIR -56 206 145 753 211 21 14 chr1 52811875 52812017 -229381647 - AluJb SINE Alu -38 274 132 449 214 104 32 chr1 52813012 52813166 -229380498 - MER103 DNA DNA 0 166 2 209 271 75 45 chr1 52813850 52813983 -229379681 + L2 LINE L2 3078 3214 -58 415 298 77 17 chr1 52814070 52814251 -229379413 - MIR SINE MIR -2 260 69 373 346 101 0 chr1 52814509 52814717 -229378947 - MIR SINE MIR 0 262 34 249 279 57 8 chr1 52815646 52815768 -229377896 + L2 LINE L2 3163 3290 -23 1100 241 30 32 chr1 52817055 52817435 -229376229 + MLT1G3 LTR MaLR 1 401 -166 936 96 19 45 chr1 52817931 52818087 -229375577 - MLT1A1 LTR MaLR -213 152 1 209 204 0 23 chr1 52819136 52819180 -229374484 - L2 LINE L2 -252 3061 3019 5290 60 3 3 chr1 52819680 52820311 -229373353 - L1PA7 LINE L1 -13 6141 5511 442 206 62 0 chr1 52820706 52820803 -229372861 + MIR SINE MIR 37 139 -69 234 224 0 69 chr1 52820829 52820887 -229372777 + MIR3 SINE MIR 127 180 -28 340 236 164 24 chr1 52820962 52821127 -229372537 + MIR SINE MIR 1 188 -74 3821 62 51 0 chr1 52821181 52821668 -229371996 + LTR10D LTR ERV1 1 512 -1 5666 54 12 5 chr1 52821856 52822518 -229371146 + PABL_B LTR ERV1 1 667 0 231 305 172 7 chr1 52822874 52823025 -229370639 + L2 LINE L2 1653 1828 -1486 7734 40 30 0 chr1 52823037 52823908 -229369756 + MER11D LTR ERVK 1 897 0 204 120 40 20 chr1 52825343 52825393 -229368271 + (TTAAA)n Simple_repeat Simple_repeat 3 53 0 990 285 85 24 chr1 52825540 52825868 -229367796 - L1MEc LINE L1 -4573 1823 1517 1630 171 29 4 chr1 52825868 52826143 -229367521 + AluJo SINE Alu 9 290 -22 990 285 85 24 chr1 52826143 52826580 -229367084 - L1MEc LINE L1 -4879 1517 1011 308 118 0 20 chr1 52826619 52826670 -229366994 + LTR54B LTR ERV1 1 50 -448 * 918 211 22 6 chr1 52826655 52826835 -229366829 + MSTA LTR MaLR 246 428 0 368 311 137 21 chr1 52826846 52827232 -229366432 + L2 LINE L2 1493 1923 -1391 928 333 116 35 chr1 52827323 52828360 -229365304 - L2 LINE L2 -52 3220 2096 1131 235 80 114 chr1 52828360 52828610 -229365054 + MLT1F LTR MaLR 1 258 -284 1658 174 13 44 chr1 52828610 52828927 -229364737 - AluJb SINE Alu 0 312 6 1131 235 80 114 chr1 52828927 52829237 -229364427 + MLT1F LTR MaLR 258 542 0 928 333 116 35 chr1 52829237 52829278 -229364386 - L2 LINE L2 -1176 2096 2060 2240 225 21 29 chr1 52829304 52829828 -229363836 + MLT2B1 LTR ERVL 1 520 0 181 195 24 0 chr1 52830846 52830887 -229362777 + MIR SINE MIR 31 72 -136 2138 125 3 3 chr1 52831479 52831782 -229361882 - AluSq SINE Alu -9 304 2 242 336 34 0 chr1 52832020 52832169 -229361495 - L1ME LINE L1 -286 5878 5725 216 0 0 0 chr1 52832169 52832193 -229361471 + (T)n Simple_repeat Simple_repeat 1 24 0 1137 279 152 12 chr1 52832193 52833282 -229360382 - L1ME LINE L1 -511 5653 4485 482 255 19 9 chr1 52833576 52833682 -229359982 - MER81 DNA DNA -3 111 5 393 257 28 9 chr1 52834098 52834207 -229359457 - MIR3 SINE MIR -54 154 44 452 280 0 38 chr1 52834624 52834756 -229358908 - MIR SINE MIR -48 214 88 352 298 86 32 chr1 52835572 52835861 -229357803 - LTR16C LTR ERVL 0 491 156 274 345 86 22 chr1 52836084 52836223 -229357441 - MIR3 SINE MIR -27 181 34 181 150 50 0 chr1 52836451 52836491 -229357173 + L2 LINE L2 3271 3312 -1 208 191 48 32 chr1 52837347 52837410 -229356254 - MER5B DNA MER1_type -113 65 2 731 82 0 10 chr1 52837716 52837814 -229355850 + MER4A LTR ERV1 1 97 -567 * 1932 109 154 91 chr1 52837811 52838195 -229355469 + MER4A LTR ERV1 257 664 0 2585 107 59 44 chr1 52838198 52838689 -229354975 + MER4A-int LTR ERV1 1 563 -6035 280 98 0 59 chr1 52838769 52838820 -229354844 + MER4A-int LTR ERV1 761 808 -5790 1304 201 53 11 chr1 52838924 52839187 -229354477 + MER4A-int LTR ERV1 1851 2124 -4207 2225 98 54 17 chr1 52839189 52839632 -229354032 + MER4-int LTR ERV1 532 1026 -5732 * 6656 92 83 22 chr1 52839631 52840439 -229353225 + MER4-int LTR ERV1 4167 5138 -1460 2883 3 0 0 chr1 52840439 52840745 -229352919 - AluYb8 SINE Alu -12 306 1 6656 92 83 22 chr1 52840745 52841285 -229352379 + MER4-int LTR ERV1 5138 5644 -954 5810 109 38 27 chr1 52841303 52842274 -229351390 - MER4A-int LTR ERV1 -1477 5121 4140 2249 139 14 14 chr1 52842291 52842644 -229351020 - L1PB1 LINE L1 -3 6864 6509 835 88 29 0 chr1 52842644 52842814 -229350850 + (TA)n Simple_repeat Simple_repeat 1 175 0 2249 139 14 14 chr1 52842814 52842827 -229350837 - L1PB1 LINE L1 -357 6510 6498 30 0 0 0 chr1 52842827 52842857 -229350807 + AT_rich Low_complexity Low_complexity 1 30 0 542 126 42 0 chr1 52842857 52843024 -229350640 + (TA)n Simple_repeat Simple_repeat 1 174 0 374 122 41 0 chr1 52843038 52843136 -229350528 + (TA)n Simple_repeat Simple_repeat 1 102 0 3916 125 4 4 chr1 52843136 52843911 -229349753 - L1PB1 LINE L1 -360 6507 5733 5889 103 104 117 chr1 52843917 52845498 -229348166 - pTR5 LTR ERV1 0 2438 743 14447 182 61 13 chr1 52845498 52849268 -229344396 - L1PB1 LINE L1 -1129 5733 1680 2122 137 3 0 chr1 52849268 52849567 -229344097 - AluSx SINE Alu -12 300 1 14447 182 61 13 chr1 52849567 52850570 -229343094 - L1PB1 LINE L1 -5182 1680 727 1905 120 20 32 chr1 52850553 52850895 -229342769 - MER4A-int LTR ERV1 -2424 4174 3837 * 13412 116 152 109 chr1 52850894 52852894 -229340770 - MER4A-int LTR ERV1 -2917 3681 1465 2064 88 42 0 chr1 52852894 52853179 -229340485 - AluSp SINE Alu -16 297 1 13412 116 152 109 chr1 52853179 52854707 -229338957 - MER4A-int LTR ERV1 -5133 1465 3 1568 136 4 0 chr1 52854711 52854939 -229338725 - MER4A LTR ERV1 0 664 436 429 118 6 163 chr1 52854941 52854997 -229338667 - MER4A LTR ERV1 -203 461 398 4822 146 38 44 chr1 52854997 52855958 -229337706 + LTR5 LTR ERVK 1 955 -14 429 118 6 163 chr1 52855958 52856070 -229337594 - MER4A LTR ERV1 -266 398 261 623 153 0 0 chr1 52856070 52856168 -229337496 - MER4A LTR ERV1 -566 98 1 873 217 48 34 chr1 52856582 52856789 -229336875 + MER63A DNA MER1_type 1 210 0 222 273 0 18 chr1 52856840 52856895 -229336769 + L3 LINE CR1 1296 1349 -228 190 278 79 88 chr1 52857244 52857460 -229336204 + L2 LINE L2 2569 2782 -532 357 196 82 21 chr1 52857854 52857951 -229335713 - MLT1K LTR MaLR -18 570 468 5438 140 48 12 chr1 52857951 52858054 -229335610 + L1PA16 LINE L1 5084 5182 -984 2368 84 3 0 chr1 52858054 52858363 -229335301 + AluY SINE Alu 1 310 -1 5438 140 48 12 chr1 52858363 52859341 -229334323 + L1PA16 LINE L1 5182 6166 0 275 305 95 68 chr1 52859347 52859642 -229334022 - MLT1K LTR MaLR -108 480 178 19391 49 2 4 chr1 52860037 52863208 -229330456 - L1PA5 LINE L1 -15 6139 2968 6156 44 0 1 chr1 52863208 52863961 -229329703 + L1PA5 LINE L1 2208 2959 -3187 536 294 158 29 chr1 52864294 52864641 -229329023 + LTR33 LTR ERVL 54 445 -76 264 311 93 20 chr1 52864691 52864842 -229328822 + MIR3 SINE MIR 41 202 -6 346 217 57 57 chr1 52865047 52865153 -229328511 + MIR SINE MIR 113 218 -44 207 259 156 67 chr1 52866382 52866517 -229327147 - MER5B DNA MER1_type -25 153 7 869 139 33 4 chr1 52866539 52866756 -229326908 + CT-rich Low_complexity Low_complexity 1 223 0 2051 123 3 0 chr1 52866760 52867060 -229326604 - AluSx SINE Alu -11 301 1 359 361 49 7 chr1 52867407 52867551 -229326113 + L2 LINE L2 3102 3251 -21 226 329 21 12 chr1 52868134 52868260 -229325404 - MIR SINE MIR -61 147 28 201 39 0 0 chr1 52868611 52868637 -229325027 + (TG)n Simple_repeat Simple_repeat 2 27 0 329 326 49 14 chr1 52868801 52868945 -229324719 + MIR SINE MIR 84 232 -30 335 256 106 33 chr1 52869220 52869400 -229324264 - L2 LINE L2 -183 3089 2897 603 263 94 20 chr1 52869453 52869708 -229323956 - L2 LINE L2 -436 2878 2605 199 305 97 97 chr1 52870320 52870589 -229323075 - L2 LINE L2 -922 2392 2124 646 262 98 67 chr1 52870746 52871193 -229322471 - L2 LINE L2 -1498 1816 1356 549 191 162 38 chr1 52871274 52871509 -229322155 + L2 LINE L2 3012 3275 -38 186 164 328 49 chr1 52871753 52871814 -229321850 + MIR SINE MIR 21 98 -164 427 332 120 17 chr1 52872340 52872581 -229321083 + L3 LINE CR1 1197 1462 -115 191 242 132 71 chr1 52872860 52873042 -229320622 + MIR3 SINE MIR 1 193 -15 209 260 20 0 chr1 52873755 52873805 -229319859 + L3 LINE CR1 1524 1574 -3 1051 119 132 100 chr1 52874356 52874607 -229319057 - MSTB1 LTR MaLR 0 432 174 3256 9 0 0 chr1 52874607 52875028 -229318636 - L1PA2 LINE L1 -536 5619 5199 4636 21 0 6 chr1 52875028 52875563 -229318101 + L1PA2 LINE L1 5624 6155 0 231 61 0 0 chr1 52875604 52875637 -229318027 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 905 134 55 24 chr1 52875639 52875803 -229317861 - MSTB1 LTR MaLR -253 173 5 634 221 117 0 chr1 52875940 52876085 -229317579 + MIR SINE MIR 99 260 -2 299 223 0 26 chr1 52876181 52876258 -229317406 + L1MC/D LINE L1 5754 5826 -301 968 264 111 19 chr1 52876460 52876839 -229316825 + L2 LINE L2 2894 3307 -6 198 296 30 30 chr1 52876939 52877074 -229316590 - L2 LINE L2 -624 2690 2556 199 281 10 83 chr1 52877863 52877959 -229315705 - L2 LINE L2 -221 3051 2963 213 39 0 0 chr1 52878120 52878146 -229315518 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 250 337 190 0 chr1 52879495 52879700 -229313964 - L3 LINE CR1 -11 1566 1323 216 0 0 0 chr1 52881027 52881051 -229312613 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 397 275 84 94 chr1 52881062 52881360 -229312304 - L2 LINE L2 0 3272 2978 216 0 0 0 chr1 52883000 52883024 -229310640 + (CA)n Simple_repeat Simple_repeat 2 25 0 537 292 85 34 chr1 52883687 52883857 -229309807 + MIR SINE MIR 15 202 -60 453 204 204 0 chr1 52883857 52883970 -229309694 + MER91C DNA MER1_type 1 136 -4 537 292 85 34 chr1 52883970 52884035 -229309629 + MIR SINE MIR 202 262 0 248 235 0 0 chr1 52885445 52885496 -229308168 - L2 LINE L2 0 3272 3222 576 214 34 130 chr1 52887410 52887543 -229306121 + MSTB1 LTR MaLR 6 103 -329 7745 18 10 1 chr1 52887543 52888654 -229305010 + L1PA4 LINE L1 5037 6155 0 576 214 34 130 chr1 52888654 52888782 -229304882 + MSTB1 LTR MaLR 103 242 -190 5733 161 56 4 chr1 52888895 52889888 -229303776 - L1PBa LINE L1 -5816 1047 3 1515 100 0 17 chr1 52890793 52891023 -229302641 + L1PA13 LINE L1 5937 6162 -1 2181 164 27 0 chr1 52891209 52891574 -229302090 + L1PBa LINE L1 128 502 -6361 * 38982 83 3 10 chr1 52891572 52897805 -229295859 - L1PA5 LINE L1 0 6153 11 367 214 0 0 chr1 52897815 52897885 -229295779 - MER77 LTR ERV1 -535 70 1 7706 175 34 25 chr1 52897963 52897992 -229295672 - L1MC3 LINE L1 -2 7783 7756 1810 155 27 0 chr1 52897992 52898288 -229295376 - AluJb SINE Alu -8 304 1 7706 175 34 25 chr1 52898288 52898822 -229294842 - L1MC3 LINE L1 -29 7756 7228 1993 135 0 0 chr1 52898822 52899125 -229294539 - AluSc SINE Alu -6 303 1 7706 175 34 25 chr1 52899125 52900111 -229293553 - L1MC3 LINE L1 -557 7228 6219 4111 135 8 57 chr1 52900123 52900168 -229293496 - L1MB2 LINE L1 -4 6167 6121 2150 98 3 16 chr1 52900168 52900474 -229293190 - AluSc SINE Alu -7 302 1 4111 135 8 57 chr1 52900474 52900951 -229292713 - L1MB2 LINE L1 -50 6121 5622 1329 209 10 17 chr1 52900951 52901252 -229292412 - AluJo SINE Alu -9 303 5 4111 135 8 57 chr1 52901252 52901432 -229292232 - L1MB2 LINE L1 -549 5622 5435 234 45 68 0 chr1 52901432 52901476 -229292188 + T-rich Low_complexity Low_complexity 2 48 0 2102 124 0 0 chr1 52901478 52901760 -229291904 - AluSx SINE Alu -30 282 1 4111 135 8 57 chr1 52901760 52901810 -229291854 - L1MB2 LINE L1 -673 5498 5447 2191 142 46 18 chr1 52901881 52902269 -229291395 - MSTA LTR MaLR -2 426 28 1932 21 15 0 chr1 52902269 52902557 -229291107 - L1PA4 LINE L1 -724 5431 5141 6390 20 0 0 chr1 52902557 52903288 -229290376 + L1PA4 LINE L1 5417 6147 -8 4663 259 69 22 chr1 52903374 52904137 -229289527 - L1MEc LINE L1 -1973 4242 3517 1807 162 3 0 chr1 52904137 52904421 -229289243 - AluJo SINE Alu -8 304 20 4663 259 69 22 chr1 52904421 52905935 -229287729 - L1MEc LINE L1 -2698 3517 1900 227 98 66 0 chr1 52905935 52905996 -229287668 + (TA)n Simple_repeat Simple_repeat 2 66 0 224 302 0 0 chr1 52906087 52906140 -229287524 + (TATG)n Simple_repeat Simple_repeat 2 54 0 635 144 0 0 chr1 52906197 52906308 -229287356 - L1 LINE L1 -1297 4849 4739 6048 181 29 4 chr1 52906308 52908526 -229285138 - L1PA16 LINE L1 -42 6124 3853 347 299 62 21 chr1 52908536 52908680 -229284984 - L1MEc LINE L1 -3760 2455 2306 309 244 33 103 chr1 52908693 52908906 -229284758 - L1MEc LINE L1 -4086 2310 2113 1165 137 0 12 chr1 52910127 52910295 -229283369 - AluSx SINE Alu -146 166 1 312 280 96 71 chr1 52912332 52912614 -229281050 - L2 LINE L2 -14 3258 2970 38444 66 6 13 chr1 52912629 52917390 -229276274 + L1PA5 LINE L1 1 4708 -1446 2367 103 0 0 chr1 52917390 52917701 -229275963 + AluY SINE Alu 1 311 0 38444 66 6 13 chr1 52917701 52919138 -229274526 + L1PA5 LINE L1 4708 6154 0 588 144 189 0 chr1 52919685 52919796 -229273868 - FLAM_C SINE Alu -11 132 1 445 322 101 8 chr1 52919806 52920064 -229273600 - L1 LINE L1 -2368 3778 3497 691 319 106 40 chr1 52920283 52920927 -229272737 - L1 LINE L1 -2977 3169 2470 2140 119 7 0 chr1 52920927 52921220 -229272444 + AluY SINE Alu 1 295 -16 691 319 106 40 chr1 52921220 52921299 -229272365 - L1 LINE L1 -3676 2470 2398 1000 155 0 0 chr1 52921844 52921986 -229271678 - FRAM SINE Alu -23 153 12 198 0 0 0 chr1 52922280 52922302 -229271362 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 21 71 0 0 chr1 52922896 52922938 -229270726 + AT_rich Low_complexity Low_complexity 1 42 0 181 325 60 48 chr1 52923673 52923756 -229269908 + L2 LINE L2 3188 3271 -1 196 306 80 55 chr1 52923971 52924170 -229269494 - L2 LINE L2 -2114 1200 997 619 248 113 57 chr1 52925058 52925288 -229268376 + MIR SINE MIR 5 247 -15 187 274 105 74 chr1 52925747 52925937 -229267727 + L2 LINE L2 2869 3064 -208 505 299 84 14 chr1 52926932 52927146 -229266518 + L1M4 LINE L1 3075 3303 -2843 301 315 50 77 chr1 52927624 52927846 -229265818 + L1MEd LINE L1 592 807 -5312 33 25 0 0 chr1 52927897 52927937 -229265727 + AT_rich Low_complexity Low_complexity 1 40 0 1798 145 0 0 chr1 52927942 52928224 -229265440 + L1M2 LINE L1 5 286 -6563 10586 180 43 10 chr1 52928325 52929262 -229264402 + L1M2 LINE L1 818 1722 -5126 1936 120 3 30 chr1 52929262 52929562 -229264102 + AluSq SINE Alu 1 292 -21 10586 180 43 10 chr1 52929562 52929673 -229263991 + L1M2 LINE L1 1722 1828 -5020 1818 179 17 7 chr1 52929673 52929970 -229263694 + AluJo SINE Alu 11 310 -2 10586 180 43 10 chr1 52929970 52932231 -229261433 + L1M2 LINE L1 1828 4237 -2611 714 107 19 0 chr1 52932253 52932356 -229261308 - Tigger7 DNA MER2_type 0 2487 2383 * 1819 185 19 0 chr1 52932355 52932680 -229260984 - Tigger7 DNA MER2_type -2156 331 1 344 284 124 5 chr1 52932697 52932915 -229260749 + L1ME3A LINE L1 5725 5968 -202 356 235 105 88 chr1 52932935 52933173 -229260491 + L1ME3A LINE L1 5924 6165 -5 1280 40 7 0 chr1 52933501 52933649 -229260015 + AluY SINE Alu 1 149 -162 871 100 41 0 chr1 52933754 52934098 -229259566 + (TA)n Simple_repeat Simple_repeat 1 358 0 2100 135 6 6 chr1 52934103 52934451 -229259213 + L1PB1 LINE L1 5801 6148 -3 5314 109 38 26 chr1 52934468 52935438 -229258226 + MER4-int LTR ERV1 4140 5121 -1477 3459 91 37 7 chr1 52935456 52935996 -229257668 - MER41-int LTR ERV1 -993 4953 4398 2811 3 0 0 chr1 52935996 52936299 -229257365 + AluYb8 SINE Alu 1 303 -15 692 274 58 9 chr1 52936903 52937228 -229256436 + L1ME4a LINE L1 5573 5913 -208 3230 175 59 17 chr1 52937381 52937697 -229255967 + L1PA11 LINE L1 4338 4639 -1507 2125 125 0 26 chr1 52937697 52938010 -229255654 + AluSx SINE Alu 1 305 -7 3230 175 59 17 chr1 52938010 52938060 -229255604 + L1PA11 LINE L1 4639 4685 -1461 180 0 0 0 chr1 52938060 52938080 -229255584 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3230 175 59 17 chr1 52938080 52938420 -229255244 + L1PA11 LINE L1 4685 5075 -1071 1524 23 0 0 chr1 52938420 52938597 -229255067 + L1PA4 LINE L1 5976 6152 -3 6517 82 15 12 chr1 52938607 52939536 -229254128 + L1PA11 LINE L1 5098 6030 -144 1999 138 10 10 chr1 52939536 52939840 -229253824 + AluSx SINE Alu 1 304 -8 6517 82 15 12 chr1 52939840 52939985 -229253679 + L1PA11 LINE L1 6030 6173 -1 1376 208 59 0 chr1 52940040 52940328 -229253336 - AluJo SINE Alu -6 306 2 225 319 29 0 chr1 52940721 52940790 -229252874 + MIR SINE MIR 58 128 -80 33 66 0 0 chr1 52940866 52940927 -229252737 + AT_rich Low_complexity Low_complexity 1 61 0 185 219 98 0 chr1 52941093 52941134 -229252530 - L2 LINE L2 -42 3230 3186 577 230 171 7 chr1 52941159 52941311 -229252353 - MER5A DNA MER1_type -6 183 7 29 47 0 0 chr1 52941472 52941515 -229252149 + AT_rich Low_complexity Low_complexity 1 43 0 1495 139 5 0 chr1 52941534 52941749 -229251915 - AluSx SINE Alu -96 216 1 245 298 122 0 chr1 52942087 52942218 -229251446 + MIR SINE MIR 86 232 -30 1136 209 4 0 chr1 52942367 52942602 -229251062 + L1 LINE L1 4042 4277 -1869 6197 164 25 12 chr1 52942605 52944692 -229248972 + MER83B-int LTR ERV1 794 3281 -5638 681 264 0 0 chr1 52944688 52944832 -229248832 + MER83B-int LTR ERV1 4539 4682 -4237 * 3991 125 49 5 chr1 52944833 52945481 -229248183 + MER83B-int LTR ERV1 4901 5577 -3342 * 4015 189 18 3 chr1 52945466 52946206 -229247458 + MER83B-int LTR ERV1 6162 6912 -2007 383 226 10 20 chr1 52946217 52946319 -229247345 + MER83B-int LTR ERV1 6846 6934 -484 757 147 24 8 chr1 52946331 52946513 -229247151 + MER83B-int LTR ERV1 3954 4323 -557 1131 188 2 14 chr1 52946617 52946856 -229246808 - HUERS-P3 LTR ERV1 -18 8901 7168 313 39 19 39 chr1 52947122 52947174 -229246490 + L1PA10 LINE L1 6117 6167 -1 482 214 36 150 chr1 52947398 52947564 -229246100 + L1MEc LINE L1 2187 2370 -3845 1940 164 0 16 chr1 52947564 52947881 -229245783 + AluJb SINE Alu 1 312 0 482 214 36 150 chr1 52947881 52947907 -229245757 + L1MEc LINE L1 2370 2397 -3818 16957 44 5 0 chr1 52947907 52950783 -229242881 + L1PA5 LINE L1 3267 6152 -2 482 214 36 150 chr1 52950783 52951010 -229242654 + L1MEc LINE L1 2397 2518 -3697 944 124 0 0 chr1 52952838 52952967 -229240697 - AluSq/x SINE Alu -183 129 1 344 293 48 54 chr1 52952968 52953115 -229240549 + MIR SINE MIR 80 225 -37 217 313 36 45 chr1 52953560 52953672 -229239992 + L2 LINE L2 2945 3055 -217 273 287 149 0 chr1 52953782 52953876 -229239788 - L2 LINE L2 0 3313 3206 315 317 116 18 chr1 52954407 52954571 -229239093 - MER5A DNA MER1_type -9 180 1 1950 171 168 8 chr1 52955439 52955808 -229237856 + MSTA LTR MaLR 1 428 0 222 37 0 0 chr1 52956590 52956617 -229237047 + (TC)n Simple_repeat Simple_repeat 2 28 0 1230 305 105 39 chr1 52957017 52957781 -229235883 + L1MB5 LINE L1 2 815 -5727 204 255 0 0 chr1 52957784 52957831 -229235833 + T-rich Low_complexity Low_complexity 1 47 0 2173 202 47 13 chr1 52957833 52958383 -229235281 + L1MB5 LINE L1 1031 1599 -4943 4069 212 38 22 chr1 52958384 52958562 -229235102 + L1MB5 LINE L1 2417 2591 -4053 1703 194 10 3 chr1 52958562 52958871 -229234793 + AluJo SINE Alu 1 311 -1 4069 212 38 22 chr1 52958871 52959615 -229234049 + L1MB5 LINE L1 2591 3374 -3270 2533 56 0 0 chr1 52959615 52959917 -229233747 - AluY SINE Alu -9 302 1 4069 212 38 22 chr1 52959917 52960407 -229233257 + L1MB5 LINE L1 3374 3855 -2789 1092 215 96 7 chr1 52961702 52961972 -229231692 + L1MB5 LINE L1 5202 5495 -1149 2040 146 6 9 chr1 52961985 52962346 -229231318 + L1PA16 LINE L1 5814 6173 0 1523 192 41 61 chr1 52962374 52962826 -229230838 + L1MB5 LINE L1 5490 5929 -743 1479 132 18 5 chr1 52962839 52963059 -229230605 + AluSx SINE Alu 1 223 -89 2207 177 52 22 chr1 52963104 52963551 -229230113 + L1MB5 LINE L1 6203 6662 -10 516 369 9 18 chr1 52963559 52963781 -229229883 + LTR40a LTR ERVL 182 401 -118 437 291 117 16 chr1 52963896 52964143 -229229521 + L2 LINE L2 2514 2785 -529 322 230 60 0 chr1 52964186 52964286 -229229378 + L1MC4 LINE L1 6964 7069 -973 220 319 0 0 chr1 52964288 52964360 -229229304 + GA-rich Low_complexity Low_complexity 2 73 0 269 51 26 0 chr1 52964474 52964513 -229229151 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 1925 177 14 9 chr1 52964525 52965033 -229228631 + L1MB3 LINE L1 4964 5476 -695 2162 137 0 10 chr1 52965058 52965365 -229228299 - AluSx SINE Alu -8 304 1 741 161 59 0 chr1 52965366 52965484 -229228180 - AluSp SINE Alu -179 134 10 21 0 0 0 chr1 52965488 52965509 -229228155 + AT_rich Low_complexity Low_complexity 1 21 0 4508 139 14 3 chr1 52965512 52966201 -229227463 + L1MB3 LINE L1 5483 6179 -4 225 325 221 0 chr1 52968113 52968276 -229225388 + MIR SINE MIR 49 247 -15 444 321 16 38 chr1 52968517 52968701 -229224963 + MIR SINE MIR 13 192 -70 858 190 50 17 chr1 52969386 52969565 -229224099 - L1MC1 LINE L1 -7 6326 6142 10763 149 43 8 chr1 52969565 52972101 -229221563 - L1PBa LINE L1 -1717 5145 2253 2277 87 7 10 chr1 52972101 52972401 -229221263 + AluSc SINE Alu 1 299 -10 10763 149 43 8 chr1 52972401 52974080 -229219584 - L1PBa LINE L1 -4609 2253 634 1145 132 37 0 chr1 52974082 52974272 -229219392 - L1PBa LINE L1 -6665 198 2 10091 199 19 1 chr1 52974276 52976278 -229217386 - L1MDa LINE L1 -1982 4558 2521 24 67 0 0 chr1 52977262 52977307 -229216357 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chr1 52978191 52978221 -229215443 + AT_rich Low_complexity Low_complexity 1 30 0 1053 251 58 65 chr1 52978503 52979076 -229214588 + L1ME LINE L1 521 1089 -4981 411 21 0 0 chr1 52979098 52979146 -229214518 + (TA)n Simple_repeat Simple_repeat 2 49 0 30392 35 1 0 chr1 52979165 52983564 -229210100 + L1PA4 LINE L1 1754 6155 0 277 61 20 20 chr1 52983659 52983708 -229209956 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 924 45 0 0 chr1 52985089 52985200 -229208464 - AluSg/x SINE Alu -16 294 184 2366 38 14 0 chr1 52985200 52985628 -229208036 - L1P2 LINE L1 -613 5542 5111 360 251 220 18 chr1 52985642 52985869 -229207795 + L1MC4a LINE L1 5724 5998 -123 1320 189 94 10 chr1 52987128 52987425 -229206239 - MER33 DNA MER1_type -1 323 2 1478 208 7 23 chr1 52988213 52988521 -229205143 - AluJo SINE Alu -9 303 1 1975 136 11 0 chr1 52988585 52988872 -229204792 + AluSg SINE Alu 1 290 -20 2281 95 0 0 chr1 52989510 52989816 -229203848 - L1P3 LINE L1 -5364 1097 792 1117 121 0 0 chr1 52989816 52989973 -229203691 - AluY SINE Alu -7 304 148 5739 110 5 0 chr1 52989973 52990757 -229202907 - L1P3 LINE L1 -5670 791 4 225 0 0 0 chr1 52990765 52990790 -229202874 + (T)n Simple_repeat Simple_repeat 1 25 0 583 270 75 69 chr1 52990790 52991138 -229202526 + L1PA12 LINE L1 54 403 -7178 7543 56 2 1 chr1 52991248 52992230 -229201434 + L1PA6 LINE L1 5171 6154 0 4058 295 35 55 chr1 52992248 52994463 -229199201 - L1PA12 LINE L1 -4816 2765 54 225 0 0 0 chr1 52994463 52994488 -229199176 + (A)n Simple_repeat Simple_repeat 1 25 0 3259 146 8 0 chr1 52994496 52994977 -229198687 + L1P3 LINE L1 4 488 -5973 12163 71 0 0 chr1 52995077 52996571 -229197093 + HERV17 LTR ERV1 4526 6019 -2607 303 51 0 0 chr1 52996564 52996603 -229197061 + HERV17 LTR ERV1 7510 7548 -1078 * 2271 89 0 3 chr1 52996593 52996886 -229196778 + HERV17 LTR ERV1 8335 8626 0 2652 65 3 0 chr1 52996886 52997211 -229196453 + LTR17 LTR ERV1 1 326 -454 210 143 0 0 chr1 52997211 52997246 -229196418 + (A)n Simple_repeat Simple_repeat 1 35 0 5450 161 39 24 chr1 52997249 52999285 -229194379 + L1MA5A LINE L1 4233 6294 -3 224 311 51 34 chr1 52999401 52999578 -229194086 - L2 LINE L2 -624 2690 2511 2072 127 10 7 chr1 53000414 53000721 -229192943 - AluSq SINE Alu -5 308 1 383 236 72 120 chr1 53002531 53002739 -229190925 - L2 LINE L2 -95 3177 2980 5982 150 29 7 chr1 53003111 53004892 -229188772 - L1MA4 LINE L1 -9 7710 5884 6842 103 12 20 chr1 53004905 53006179 -229187485 - L1PB1 LINE L1 0 6151 4900 2122 228 45 29 chr1 53006181 53007190 -229186474 - L1MA4 LINE L1 -3649 3916 2893 2290 87 3 10 chr1 53007265 53007565 -229186099 - AluSp SINE Alu -15 298 1 360 262 12 0 chr1 53009220 53009304 -229184360 - MIR SINE MIR -103 105 21 606 278 94 34 chr1 53009876 53010110 -229183554 - MIR SINE MIR -2 260 13 242 279 93 12 chr1 53010184 53010270 -229183394 - L1MEd LINE L1 -6024 95 3 1942 145 0 0 chr1 53010496 53010815 -229182849 - AluSx SINE Alu 0 319 1 234 282 0 39 chr1 53010984 53011062 -229182602 + L3 LINE CR1 1042 1116 -461 2706 13 3 3 chr1 53011143 53011443 -229182221 - AluYa5 SINE Alu -11 300 1 341 276 34 24 chr1 53011763 53011899 -229181765 - MIR SINE MIR -62 146 25 542 323 129 22 chr1 53012062 53012418 -229181246 + L2 LINE L2 2894 3287 -26 1117 219 15 8 chr1 53012418 53012678 -229180986 + L1 LINE L1 3977 4238 -1908 3304 121 54 10 chr1 53012683 53013186 -229180478 + LTR17 LTR ERV1 256 780 0 12661 107 8 40 chr1 53013186 53015110 -229178554 + HERV17 LTR ERV1 1 1864 -6762 2286 140 6 0 chr1 53015107 53015443 -229178221 + HERV17 LTR ERV1 1679 2016 -6610 * 15940 66 1 23 chr1 53015426 53017470 -229176194 + HERV17 LTR ERV1 2430 4428 -4198 21919 70 6 6 chr1 53017596 53020411 -229173253 - L1P LINE L1 -3331 2815 1 4693 256 45 20 chr1 53020419 53021736 -229171928 - L1PA12 LINE L1 -5169 2415 6 776 269 75 24 chr1 53021752 53022005 -229171659 + ERVL-C1 LTR ERVL 5490 5755 -9 911 227 16 0 chr1 53022006 53022200 -229171464 + MLT2C1 LTR ERVL 1 197 -200 692 219 109 6 chr1 53022201 53022384 -229171280 + MLT1D LTR MaLR 304 505 0 203 278 65 0 chr1 53022566 53022674 -229170990 + (CAGG)n Simple_repeat Simple_repeat 2 116 0 264 30 0 0 chr1 53023689 53023722 -229169942 + (TGAG)n Simple_repeat Simple_repeat 3 35 0 2224 176 31 12 chr1 53023993 53024407 -229169257 + MSTB LTR MaLR 1 422 -4 15603 218 16 27 chr1 53025935 53029964 -229163700 - L1PA15 LINE L1 -7 6860 2788 1187 204 5 0 chr1 53029964 53030185 -229163479 - L1MA2 LINE L1 0 6304 6083 15603 218 16 27 chr1 53030185 53030999 -229162665 - L1PA15 LINE L1 -4079 2788 1966 38049 93 4 8 chr1 53031022 53036262 -229157402 + L1P LINE L1 11 5228 -918 29142 96 5 10 chr1 53036369 53041422 -229152242 + L1PA7 LINE L1 1125 6153 -1 432 306 63 34 chr1 53041742 53041948 -229151716 - L3b LINE CR1 -95 1488 1277 198 281 158 44 chr1 53042226 53042340 -229151324 + MIR SINE MIR 126 252 -10 1487 137 0 39 chr1 53042393 53042627 -229151037 + AluSx SINE Alu 1 225 -87 2663 230 26 3 chr1 53042627 53043283 -229150381 - L1MB4 LINE L1 -25 6155 5485 8031 29 0 0 chr1 53043307 53044719 -229148945 - L1PA4 LINE L1 -6 6149 4735 357 294 42 8 chr1 53045120 53045239 -229148425 - L2 LINE L2 -1 3312 3190 216 248 91 42 chr1 53045465 53045613 -229148051 + MIR3 SINE MIR 12 173 -61 573 285 66 29 chr1 53046428 53046670 -229146994 - MIR SINE MIR -2 260 10 237 238 107 24 chr1 53046740 53046824 -229146840 - L1MEd LINE L1 -6024 95 5 349 239 94 0 chr1 53046892 53047009 -229146655 + L1ME4a LINE L1 5808 5935 -186 4465 165 48 8 chr1 53047602 53048439 -229145225 - L1PA16 LINE L1 -20 6146 5270 1329 169 4 37 chr1 53048531 53048773 -229144891 - AluJo SINE Alu -7 305 72 1450 315 29 79 chr1 53048774 53049438 -229144226 - L1MB4 LINE L1 -816 5330 4705 369 0 0 0 chr1 53049438 53049479 -229144185 + (TG)n Simple_repeat Simple_repeat 2 42 0 1450 315 29 79 chr1 53049479 53049548 -229144116 - L1MB4 LINE L1 -1441 4705 4634 * 2039 224 35 14 chr1 53049533 53050110 -229143554 - L1MB4 LINE L1 -2544 3602 3014 235 189 94 0 chr1 53050182 53050235 -229143429 - L1M4 LINE L1 -1165 4981 4924 972 74 13 20 chr1 53050275 53050424 -229143240 + THE1C-int LTR MaLR 1433 1580 0 1794 164 57 46 chr1 53050424 53050795 -229142869 + THE1C LTR MaLR 1 375 0 699 264 55 0 chr1 53050809 53051010 -229142654 + MLT1D LTR MaLR 287 498 -7 242 323 23 15 chr1 53051021 53051151 -229142513 + (CAGG)n Simple_repeat Simple_repeat 1 131 0 253 282 68 60 chr1 53052595 53052712 -229140952 + L2 LINE L2 3150 3267 -5 2023 176 83 23 chr1 53053857 53054255 -229139409 - MSTB LTR MaLR -4 422 1 400 165 0 25 chr1 53054288 53054358 -229139306 - MSTB-int LTR MaLR -19 1632 1563 2654 90 22 80 chr1 53054358 53054758 -229138906 + MER51B LTR ERV1 1 377 0 12626 141 32 11 chr1 53054767 53056858 -229136806 + MER51B-int LTR ERV1 10 2146 -5670 42531 61 5 8 chr1 53056858 53063032 -229130632 + L1PA5 LINE L1 2 6152 -2 187 358 0 0 chr1 53063173 53063254 -229130410 + MIR SINE MIR 126 206 -56 625 92 11 0 chr1 53063584 53063671 -229129993 - MER41A LTR ERV1 -86 468 381 294 253 226 0 chr1 53063795 53063941 -229129723 + MIR SINE MIR 84 262 0 2183 111 0 38 chr1 53064223 53064538 -229129126 - AluSx SINE Alu -9 303 1 271 355 86 38 chr1 53064866 53065238 -229128426 + L2 LINE L2 1715 2104 -1210 193 333 53 13 chr1 53065470 53065545 -229128119 + MIR3 SINE MIR 113 190 -18 757 179 17 0 chr1 53066103 53066220 -229127444 + AluJb SINE Alu 170 288 -24 2315 83 0 13 chr1 53066788 53067090 -229126574 - AluY SINE Alu 0 311 14 4681 76 100 3 chr1 53067092 53067751 -229125913 - L1MA2 LINE L1 -12 6292 5570 544 135 31 10 chr1 53068007 53068103 -229125561 + MER4A LTR ERV1 1 98 -566 1787 148 3 35 chr1 53068103 53068460 -229125204 + MER4A LTR ERV1 261 664 0 1325 95 0 6 chr1 53068570 53068749 -229124915 - PABL_A LTR ERV1 0 660 483 1146 90 0 0 chr1 53068750 53068894 -229124770 - PABL_A LTR ERV1 -516 144 1 3206 108 25 0 chr1 53068894 53069331 -229124333 - PABL_A-int LTR ERV1 0 5015 4568 316 184 0 0 chr1 53069330 53069379 -229124285 - PABL_B-int LTR ERV1 -7061 61 13 * 386 214 15 92 chr1 53069380 53069391 -229124273 + L2 LINE L2 2556 2566 -748 5506 69 9 1 chr1 53069391 53070046 -229123618 - PABL_A LTR ERV1 0 660 1 386 214 15 92 chr1 53070046 53070165 -229123499 + L2 LINE L2 2566 2676 -638 * 517 294 124 9 chr1 53070163 53070381 -229123283 + MIR SINE MIR 10 252 -10 270 274 42 11 chr1 53070434 53070529 -229123135 + L2 LINE L2 2719 2816 -498 448 315 8 0 chr1 53070721 53070848 -229122816 + L2 LINE L2 3186 3313 0 200 236 0 124 chr1 53071008 53071097 -229122567 + L2 LINE L2 3189 3266 -6 234 0 0 0 chr1 53071605 53071631 -229122033 + (A)n Simple_repeat Simple_repeat 1 26 0 2592 56 0 0 chr1 53072747 53073052 -229120612 - AluSc SINE Alu -4 305 1 246 105 0 0 chr1 53073252 53073290 -229120374 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 857 187 187 44 chr1 53073389 53073478 -229120186 - MER63B DNA MER1_type -774 288 213 668 242 97 24 chr1 53073478 53073643 -229120021 + MER45A DNA AcHobo 2 178 0 857 187 187 44 chr1 53073643 53073804 -229119860 - MER63B DNA MER1_type -849 213 2 375 259 125 44 chr1 53075372 53075478 -229118186 - HAL1 LINE L1 -117 2390 2294 2257 154 54 47 chr1 53075478 53075907 -229117757 + MSTB1 LTR MaLR 1 432 0 375 259 125 44 chr1 53075907 53076143 -229117521 - HAL1 LINE L1 -213 2294 2020 2112 171 27 83 chr1 53076294 53076396 -229117268 - L1M4 LINE L1 -1261 4885 4779 2570 67 35 9 chr1 53076396 53076737 -229116927 + L1MA1 LINE L1 5953 6302 0 2112 171 27 83 chr1 53076737 53077061 -229116603 - L1M4 LINE L1 -1367 4779 4491 2415 88 3 0 chr1 53077061 53077368 -229116296 - AluSg SINE Alu -2 308 1 2112 171 27 83 chr1 53077368 53077460 -229116204 - L1M4 LINE L1 -1655 4491 4395 1292 132 84 0 chr1 53077717 53077944 -229115720 - L1MA4A LINE L1 -7 6296 6051 761 256 83 26 chr1 53078134 53078400 -229115264 + L2 LINE L2 3033 3313 0 186 43 0 0 chr1 53078517 53078540 -229115124 + (TG)n Simple_repeat Simple_repeat 1 23 0 820 274 31 31 chr1 53078580 53078835 -229114829 + MIR SINE MIR 5 259 -3 239 345 36 36 chr1 53079097 53079207 -229114457 + L2 LINE L2 3163 3272 0 1915 143 3 33 chr1 53081263 53081570 -229112094 + AluSx SINE Alu 1 298 -14 523 277 48 41 chr1 53081772 53081965 -229111699 + MIR SINE MIR 10 203 -59 709 171 65 0 chr1 53083156 53083279 -229110385 - LTR47A LTR ERVL 0 452 322 23 54 0 0 chr1 53084466 53084503 -229109161 + AT_rich Low_complexity Low_complexity 1 37 0 641 244 70 0 chr1 53084808 53084980 -229108684 + MIR SINE MIR 62 245 -17 1222 118 29 0 chr1 53085375 53085545 -229108119 - AluSg/x SINE Alu -9 303 129 510 249 57 88 chr1 53085547 53085637 -229108027 - L1M4 LINE L1 -981 5234 5143 892 212 111 5 chr1 53085637 53085835 -229107829 - MER20 DNA MER1_type 0 219 1 510 249 57 88 chr1 53085835 53086166 -229107498 - L1M4 LINE L1 -1072 5143 4826 502 124 22 11 chr1 53086181 53086270 -229107394 - L1MC2 LINE L1 0 6344 6255 239 254 0 18 chr1 53087458 53087513 -229106151 - MLT1D LTR MaLR -451 54 1 546 249 48 14 chr1 53087518 53087727 -229105937 - L1MEc LINE L1 -3697 2518 2303 436 267 58 32 chr1 53087708 53087745 -229105919 - L1MEc LINE L1 -3838 2377 2342 * 18187 43 2 1 chr1 53087745 53090628 -229103036 - L1PA5 LINE L1 -2 6152 3267 436 267 58 32 chr1 53090628 53090654 -229103010 - L1MEc LINE L1 -3873 2342 2318 1921 164 0 16 chr1 53090654 53090971 -229102693 - AluJb SINE Alu 0 312 1 436 267 58 32 chr1 53090971 53091192 -229102472 - L1MEc LINE L1 -3897 2318 2119 347 57 0 38 chr1 53091363 53091416 -229102248 - L1PA10 LINE L1 -1 6167 6117 278 274 0 0 chr1 53091416 53091489 -229102175 - HUERS-P3b LTR ERV1 -2033 6886 6814 1230 185 2 16 chr1 53091670 53091920 -229101744 + HUERS-P3 LTR ERV1 7158 8901 -18 780 141 23 51 chr1 53092019 53092196 -229101468 - HUERS-P3b LTR ERV1 -549 4331 4160 409 248 0 53 chr1 53092208 53092321 -229101343 - HUERS-P3b LTR ERV1 -466 6952 6846 * 4347 191 21 7 chr1 53092311 53093072 -229100592 - HUERS-P3b LTR ERV1 -1986 6933 6162 4323 125 49 5 chr1 53093057 53093705 -229099959 - HUERS-P3b LTR ERV1 -3342 5577 4901 * 710 234 21 28 chr1 53093706 53093851 -229099813 - HUERS-P3b LTR ERV1 -4237 4682 4539 * 6723 178 29 16 chr1 53093844 53095933 -229097731 - HUERS-P3b LTR ERV1 -5314 2104 794 1246 215 0 0 chr1 53095936 53096173 -229097491 - L1 LINE L1 -1869 4979 4743 254 283 94 0 chr1 53096321 53096427 -229097237 - MIR SINE MIR -30 232 117 1475 144 5 0 chr1 53096776 53096991 -229096673 + AluSx SINE Alu 1 216 -96 197 95 0 48 chr1 53097013 53097055 -229096609 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 559 224 171 7 chr1 53097218 53097370 -229096294 + MER5A DNA MER1_type 7 183 -6 184 219 98 0 chr1 53097395 53097436 -229096228 + L2 LINE L2 3186 3230 -42 33 66 0 0 chr1 53097602 53097663 -229096001 + AT_rich Low_complexity Low_complexity 1 61 0 219 319 29 0 chr1 53097739 53097808 -229095856 - MIR SINE MIR -80 128 58 1332 211 55 0 chr1 53098187 53098476 -229095188 + AluJo SINE Alu 2 306 -6 4481 71 12 25 chr1 53098531 53098676 -229094988 - L1PA11 LINE L1 -1 6173 6028 2237 106 10 7 chr1 53098676 53098979 -229094685 - AluSx SINE Alu -8 304 1 4481 71 12 25 chr1 53098979 53099423 -229094241 - L1PA11 LINE L1 -146 6028 5592 3907 171 41 12 chr1 53099424 53099795 -229093869 - L1P LINE L1 -1052 5094 4735 252 0 0 0 chr1 53099795 53099823 -229093841 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3907 171 41 12 chr1 53099823 53099870 -229093794 - L1P LINE L1 -1411 4735 4691 2048 128 14 3 chr1 53099870 53100166 -229093498 - AluSx SINE Alu -13 299 1 3907 171 41 12 chr1 53100166 53100482 -229093182 - L1P LINE L1 -1455 4691 4338 495 244 108 18 chr1 53100570 53100849 -229092815 - L1ME4a LINE L1 -135 5986 5683 248 267 98 67 chr1 53101877 53102102 -229091562 - L1ME3A LINE L1 -15 6155 5924 483 263 104 50 chr1 53102122 53102357 -229091307 - L1ME3A LINE L1 -202 5968 5716 3423 162 16 6 chr1 53102357 53102901 -229090763 + MER44D DNA MER2_type 1 605 0 483 263 104 50 chr1 53102901 53102924 -229090740 - L1ME3A LINE L1 -454 5716 5696 * 16006 181 26 36 chr1 53102923 53105235 -229088429 - L1 LINE L1 -2611 4237 1903 1868 149 11 11 chr1 53105235 53105517 -229088147 - AluJo SINE Alu -20 292 11 16006 181 26 36 chr1 53105517 53105631 -229088033 - L1 LINE L1 -4945 1903 1789 2200 127 0 3 chr1 53105631 53105945 -229087719 - AluSq SINE Alu 0 313 1 16006 181 26 36 chr1 53105945 53106967 -229086697 - L1 LINE L1 -5059 1789 762 627 68 0 0 chr1 53106967 53107041 -229086623 - AluSp/q SINE Alu -20 293 220 16006 181 26 36 chr1 53107041 53107790 -229085874 - L1 LINE L1 -6086 762 7 629 249 92 72 chr1 53109152 53109401 -229084263 - MIR SINE MIR -2 260 7 209 301 80 55 chr1 53110291 53110490 -229083174 + L2 LINE L2 997 1200 -2114 180 362 72 0 chr1 53110719 53110788 -229082876 - L2 LINE L2 -11 3261 3188 21 71 0 0 chr1 53111523 53111565 -229082099 + AT_rich Low_complexity Low_complexity 1 42 0 957 169 0 0 chr1 53112471 53112613 -229081051 + FRAM SINE Alu 12 153 -23 716 308 86 53 chr1 53113158 53113241 -229080423 + L1 LINE L1 2398 2477 -3669 2079 124 7 0 chr1 53113241 53113532 -229080132 - AluY SINE Alu -18 293 1 716 308 86 53 chr1 53113532 53114196 -229079468 + L1 LINE L1 2477 3169 -2977 276 295 82 68 chr1 53114273 53114688 -229078976 + L1 LINE L1 3349 3775 -2371 600 139 213 0 chr1 53114688 53114796 -229078868 + FLAM_C SINE Alu 1 131 -2 276 295 82 68 chr1 53114796 53114926 -229078738 + L1 LINE L1 3775 3902 -2244 335 291 95 75 chr1 53115195 53115594 -229078070 + L2 LINE L2 2857 3263 -9 9449 34 0 0 chr1 53115674 53117508 -229076156 + L1PA4 LINE L1 4320 6154 -1 231 36 0 0 chr1 53118620 53118648 -229075016 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1167 143 0 12 chr1 53119518 53119686 -229073978 + AluSq SINE Alu 1 166 -147 6649 178 22 20 chr1 53121344 53123611 -229070053 + L1PA16 LINE L1 3852 6124 -42 696 144 0 0 chr1 53123611 53123722 -229069942 + L1 LINE L1 4739 4849 -1297 265 229 42 141 chr1 53123732 53123924 -229069740 + L1MEc LINE L1 1741 1913 -4483 351 92 83 0 chr1 53123925 53124034 -229069630 + (TA)n Simple_repeat Simple_repeat 1 118 0 1570 250 69 71 chr1 53124042 53124997 -229068667 + L1MEc LINE L1 1831 2754 -3461 11174 36 1 0 chr1 53124997 53127026 -229066638 - L1PA4 LINE L1 -1 6154 4125 1570 250 69 71 chr1 53127026 53127227 -229066437 + L1MEc LINE L1 2754 2954 -3261 713 110 25 17 chr1 53127404 53127522 -229066142 - L1PA4 LINE L1 0 6155 6037 * 11282 36 3 0 chr1 53127496 53129553 -229064111 + L1PA4 LINE L1 4093 6152 -3 219 309 0 36 chr1 53129682 53129766 -229063898 - L3 LINE CR1 -455 1122 1042 1788 167 0 0 chr1 53129934 53130241 -229063423 + AluSx SINE Alu 1 307 0 682 315 60 4 chr1 53130627 53130862 -229062802 + MIR SINE MIR 13 260 -2 490 81 0 0 chr1 53131720 53131782 -229061882 + AluY SINE Alu 21 82 -228 9431 105 10 51 chr1 53131863 53133342 -229060322 - HERV17 LTR ERV1 -6823 1803 385 1428 99 0 0 chr1 53133342 53133534 -229060130 + L1PA5 LINE L1 5959 6150 -4 2002 129 57 40 chr1 53133534 53133874 -229059790 + L1PA16 LINE L1 5812 6166 0 4985 64 23 0 chr1 53133880 53134061 -229059603 + L1PA16 LINE L1 4824 4985 -1181 1861 97 0 0 chr1 53134061 53134298 -229059366 + AluY SINE Alu 1 237 -74 4985 64 23 0 chr1 53134298 53134603 -229059061 + L1PA16 LINE L1 4985 5258 -908 9359 82 18 2 chr1 53134603 53135224 -229058440 - L1PA7 LINE L1 -6 6148 5539 3468 207 19 78 chr1 53135224 53136253 -229057411 + LTR5 LTR ERVK 1 969 0 9359 82 18 2 chr1 53136253 53137645 -229056019 - L1PA7 LINE L1 -615 5539 4120 4985 64 23 0 chr1 53137645 53138492 -229055172 + L1PA16 LINE L1 5258 6166 0 421 215 37 28 chr1 53139196 53139303 -229054361 + L2 LINE L2 3193 3300 -13 1612 118 36 5 chr1 53140569 53140790 -229052874 - MER30 DNA MER1_type 0 230 3 224 315 143 42 chr1 53141094 53141310 -229052354 + L2 LINE L2 2846 3083 -189 302 298 84 105 chr1 53141463 53141701 -229051963 + L2 LINE L2 3038 3270 -2 294 304 29 68 chr1 53141871 53142153 -229051511 - L2 LINE L2 -226 3046 2776 355 335 28 51 chr1 53147440 53147616 -229046048 + MIR SINE MIR 32 203 -59 355 274 48 7 chr1 53150892 53151038 -229042626 + (CCTG)n Simple_repeat Simple_repeat 1 152 0 4931 56 37 5 chr1 53151048 53151637 -229042027 + LTR14B LTR ERVK 1 608 0 203 274 32 0 chr1 53151666 53151728 -229041936 + (CCTG)n Simple_repeat Simple_repeat 1 64 0 1541 235 94 34 chr1 53151732 53152208 -229041456 - MLT1D LTR MaLR 0 505 1 1328 215 52 79 chr1 53152692 53153134 -229040530 - MSTB1 LTR MaLR 0 432 3 3101 203 61 14 chr1 53154219 53155096 -229038568 + L1MB4 LINE L1 5167 6093 -87 16043 143 74 35 chr1 53155103 53159186 -229034478 + L1PA8 LINE L1 5 4390 -2071 7457 36 5 1 chr1 53159186 53160202 -229033462 + L1PA3 LINE L1 5173 6155 0 21 36 0 0 chr1 53160202 53160230 -229033434 + AT_rich Low_complexity Low_complexity 1 28 0 8904 102 9 0 chr1 53160230 53162337 -229031327 + L1PA8 LINE L1 4383 6486 -1 320 197 0 0 chr1 53162502 53162573 -229031091 + L1MB3 LINE L1 6092 6162 -21 201 274 14 55 chr1 53162914 53162987 -229030677 - L3 LINE CR1 -466 1111 1042 668 271 85 34 chr1 53163525 53163761 -229029903 + MIR SINE MIR 13 260 -2 1485 247 36 38 chr1 53164650 53165152 -229028512 - MLT1D LTR MaLR -4 501 1 407 228 46 70 chr1 53165152 53165397 -229028267 - MLT1D-int LTR MaLR 0 1734 1238 900 237 13 0 chr1 53165465 53165697 -229027967 - MLT1D-int LTR MaLR -1136 235 1 665 226 8 8 chr1 53165748 53165881 -229027783 + FLAM_A SINE Alu 1 133 0 363 136 0 0 chr1 53165891 53165950 -229027714 + (GA)n Simple_repeat Simple_repeat 2 60 0 1114 237 103 19 chr1 53165968 53166386 -229027278 - MLT1D LTR MaLR -52 453 1 362 274 81 0 chr1 53166386 53166510 -229027154 - MLT1D-int LTR MaLR 0 1371 1238 207 162 0 0 chr1 53166899 53166936 -229026728 + CT-rich Low_complexity Low_complexity 4 40 0 2254 118 16 0 chr1 53166947 53167251 -229026413 - AluSq SINE Alu -4 309 1 2194 120 3 3 chr1 53167265 53167573 -229026091 - AluSg SINE Alu -2 308 1 42054 44 2 1 chr1 53167974 53174112 -229019552 + L1PA4 LINE L1 2 6148 -7 39 0 0 0 chr1 53174118 53174157 -229019507 + AT_rich Low_complexity Low_complexity 1 39 0 283 245 110 60 chr1 53174207 53174407 -229019257 - L1MCc LINE L1 -4935 1488 1279 584 196 29 7 chr1 53174827 53174965 -229018699 - MLT1A1 LTR MaLR -5 360 220 244 165 13 114 chr1 53174975 53175054 -229018610 - MLT1A1 LTR MaLR -73 317 247 1417 191 14 17 chr1 53175063 53175356 -229018308 - MLT1A1 LTR MaLR -73 292 1 2422 83 0 3 chr1 53176098 53176399 -229017265 + AluSg SINE Alu 1 300 -10 236 256 13 128 chr1 53176535 53176691 -229016973 + L1ME LINE L1 5528 5665 -456 263 189 94 0 chr1 53177317 53177370 -229016294 - L2 LINE L2 0 3272 3215 318 280 154 33 chr1 53177655 53177837 -229015827 - MIR SINE MIR -55 207 4 288 309 291 4 chr1 53177890 53178168 -229015496 - L2 LINE L2 -615 2699 2342 265 310 47 47 chr1 53178507 53178678 -229014986 - L2 LINE L2 -1371 1943 1773 181 284 164 0 chr1 53178703 53178770 -229014894 + L2 LINE L2 3133 3210 -62 405 0 0 0 chr1 53178773 53178818 -229014846 + (CA)n Simple_repeat Simple_repeat 1 45 0 440 280 87 13 chr1 53178858 53179008 -229014656 + MIR SINE MIR 32 192 -70 4052 83 45 21 chr1 53179067 53179208 -229014456 + L1PA10 LINE L1 5546 5682 -486 2144 116 0 32 chr1 53179208 53179519 -229014145 + AluSx SINE Alu 1 301 -11 4052 83 45 21 chr1 53179519 53179981 -229013683 + L1PA10 LINE L1 5682 6163 -5 245 309 0 12 chr1 53180070 53180154 -229013510 + C-rich Low_complexity Low_complexity 3 85 0 220 355 28 35 chr1 53180340 53180481 -229013183 + MIR3 SINE MIR 62 201 -7 513 294 97 13 chr1 53180538 53180766 -229012898 - MIR SINE MIR -3 259 13 319 256 99 41 chr1 53180960 53181081 -229012583 - MER91A DNA MER1_type 0 196 69 293 0 27 0 chr1 53181149 53181186 -229012478 + (TC)n Simple_repeat Simple_repeat 1 38 0 269 344 117 13 chr1 53181906 53182060 -229011604 - MIR SINE MIR -79 183 14 189 0 0 0 chr1 53182078 53182099 -229011565 + (A)n Simple_repeat Simple_repeat 1 21 0 290 286 10 50 chr1 53182949 53183137 -229010527 + GA-rich Low_complexity Low_complexity 1 296 0 275 358 17 0 chr1 53184260 53184380 -229009284 - MIR SINE MIR -71 137 16 288 343 37 0 chr1 53184860 53184968 -229008696 - MIR SINE MIR -67 141 30 2333 92 10 0 chr1 53188192 53188497 -229005167 + AluSq SINE Alu 1 308 -5 330 290 69 30 chr1 53188663 53188794 -229004870 - MER91A DNA MER1_type -2 194 59 295 294 126 41 chr1 53188837 53189106 -229004558 + L2 LINE L2 2921 3212 -60 212 297 121 55 chr1 53189247 53189412 -229004252 + MIR3 SINE MIR 5 180 -28 947 138 0 7 chr1 53190331 53190469 -229003195 - AluJo SINE Alu -175 137 1 436 226 26 22 chr1 53191478 53191619 -229002045 - MIR SINE MIR -63 145 47 611 13 13 0 chr1 53193548 53193624 -229000040 + (TG)n Simple_repeat Simple_repeat 2 78 0 306 311 151 62 chr1 53193886 53194597 -228999067 - L2 LINE L2 -571 2743 1970 2157 112 14 0 chr1 53195609 53195904 -228997760 - AluSx SINE Alu -13 299 1 384 298 119 68 chr1 53196079 53196492 -228997172 + L2 LINE L2 2836 3269 -3 251 261 14 0 chr1 53196495 53196564 -228997100 + L2 LINE L2 3202 3271 -1 183 224 145 40 chr1 53196569 53196645 -228997019 + L2 LINE L2 3122 3205 -67 244 290 40 48 chr1 53196673 53196797 -228996867 + L3 LINE CR1 1382 1504 -73 1146 227 15 66 chr1 53196797 53197132 -228996532 - MLT1A1 LTR MaLR 0 365 48 1312 112 0 6 chr1 53197134 53197313 -228996351 - AluSq SINE Alu -4 309 132 247 200 36 0 chr1 53197313 53197368 -228996296 - MLT1A1 LTR MaLR -308 57 1 1385 161 95 129 chr1 53197556 53197643 -228996021 + Charlie4a DNA MER1_type 22 110 -1851 2353 110 3 0 chr1 53197643 53197953 -228995711 + AluSq SINE Alu 1 311 -2 1385 161 95 129 chr1 53197953 53198250 -228995414 + Charlie4a DNA MER1_type 110 388 -1573 2095 128 0 3 chr1 53198250 53198538 -228995126 + AluSx SINE Alu 1 287 -25 1385 161 95 129 chr1 53198538 53198648 -228995016 + Charlie4a DNA MER1_type 388 500 -8 506 349 47 0 chr1 53199137 53199329 -228994335 - MIR3 SINE MIR -6 202 2 187 139 111 0 chr1 53199377 53199413 -228994251 - L2 LINE L2 0 3313 3274 2106 124 8 51 chr1 53199426 53199654 -228994010 - MER46B DNA MER2_type -2502 229 146 1971 101 36 22 chr1 53199654 53199966 -228993698 - AluSp SINE Alu 0 316 1 2106 124 8 51 chr1 53199966 53200106 -228993558 - MER46B DNA MER2_type -2585 146 1 352 111 37 62 chr1 53200035 53200116 -228993548 + MER46A DNA MER2_type 75 153 -83 * 1326 211 201 32 chr1 53200252 53201185 -228992479 - L2 LINE L2 0 3313 2232 2515 89 0 0 chr1 53201754 53202067 -228991597 - AluSq SINE Alu 0 313 1 211 259 19 0 chr1 53202134 53202188 -228991476 - L2 LINE L2 -2 3270 3216 286 327 9 0 chr1 53202309 53202416 -228991248 - L2 LINE L2 -1005 2309 2202 460 343 134 12 chr1 53202701 53202955 -228990709 + L3 LINE CR1 1183 1467 -110 554 294 85 55 chr1 53203632 53203867 -228989797 - MIR SINE MIR -20 242 1 377 257 0 0 chr1 53203968 53204042 -228989622 - L2 LINE L2 -213 3059 2986 431 208 87 77 chr1 53204114 53204321 -228989343 + L1MC5 LINE L1 7730 7938 -23 2098 124 17 0 chr1 53204339 53204638 -228989026 + AluSx SINE Alu 1 304 -8 206 174 22 0 chr1 53204735 53204781 -228988883 + GA-rich Low_complexity Low_complexity 4 50 0 5379 145 28 6 chr1 53204799 53206545 -228987119 + L1MA4A LINE L1 4358 6136 -167 256 132 0 0 chr1 53206546 53206584 -228987080 + AluSq SINE Alu 2 39 -263 800 311 76 33 chr1 53206592 53207042 -228986622 + L2 LINE L2 1995 2463 -851 1995 105 4 0 chr1 53207042 53207299 -228986365 + AluSq SINE Alu 39 296 -17 1180 71 6 0 chr1 53207299 53207468 -228986196 + L1MA4A LINE L1 6133 6302 -1 460 346 32 9 chr1 53207487 53207704 -228985960 + MIR SINE MIR 1 222 -40 1469 254 116 54 chr1 53207733 53208208 -228985456 + L2 LINE L2 2203 2647 -666 1900 157 33 0 chr1 53208208 53208508 -228985156 + AluJo SINE Alu 1 310 -2 1469 254 116 54 chr1 53208508 53208857 -228984807 + L2 LINE L2 2647 2973 -340 399 21 0 0 chr1 53208857 53208905 -228984759 + (CA)n Simple_repeat Simple_repeat 2 49 0 1469 254 116 54 chr1 53208905 53209084 -228984580 + L2 LINE L2 2973 3265 -48 1659 37 0 0 chr1 53209084 53209273 -228984391 + AluY SINE Alu 122 310 -1 1469 254 116 54 chr1 53209273 53209313 -228984351 + L2 LINE L2 3265 3301 -12 1470 244 81 9 chr1 53209505 53209960 -228983704 - Charlie4a DNA MER1_type 0 508 21 369 262 87 24 chr1 53212020 53212146 -228981518 + MIR SINE MIR 16 149 -113 267 233 172 17 chr1 53212680 53212796 -228980868 + L2 LINE L2 2625 2758 -556 343 310 103 17 chr1 53212822 53213054 -228980610 + L2 LINE L2 2834 3085 -187 842 183 18 105 chr1 53213178 53213258 -228980406 - MER3 DNA MER1_type 0 209 124 1960 128 31 0 chr1 53213258 53213547 -228980117 + AluSq SINE Alu 1 298 -15 842 183 18 105 chr1 53213547 53213695 -228979969 - MER3 DNA MER1_type -85 124 1 550 269 134 0 chr1 53214874 53215045 -228978619 - MIR SINE MIR -49 213 20 309 315 47 8 chr1 53215314 53215441 -228978223 + MIR3 SINE MIR 33 164 -44 229 325 78 19 chr1 53216443 53216597 -228977067 + MIR3 SINE MIR 33 195 -13 602 282 61 30 chr1 53216703 53216965 -228976699 + L2 LINE L2 1813 2082 -1232 628 217 14 118 chr1 53217339 53217551 -228976113 + L2 LINE L2 3119 3308 -5 225 184 40 105 chr1 53217661 53217737 -228975927 + AluJo SINE Alu 64 134 -168 1606 187 3 28 chr1 53219260 53219549 -228974115 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr1 53219550 53219574 -228974090 + (CA)n Simple_repeat Simple_repeat 1 24 0 186 103 0 0 chr1 53222057 53222086 -228971578 + (CCCCCA)n Simple_repeat Simple_repeat 5 33 0 244 411 51 21 chr1 53222422 53222658 -228971006 + L2 LINE L2 2956 3198 -74 541 283 34 25 chr1 53222695 53222914 -228970750 + MIR SINE MIR 42 262 0 469 151 57 28 chr1 53222941 53223047 -228970617 - L2 LINE L2 -42 3271 3163 220 242 16 16 chr1 53223862 53223924 -228969740 - MIR3 SINE MIR -29 179 118 598 256 85 0 chr1 53224494 53224658 -228969006 + MIR SINE MIR 78 255 -7 225 65 0 0 chr1 53226401 53226432 -228967232 + (CA)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr1 53226566 53226592 -228967072 + (CA)n Simple_repeat Simple_repeat 2 27 0 25 0 0 0 chr1 53227645 53227670 -228965994 + GC_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 53227733 53227763 -228965901 + GC_rich Low_complexity Low_complexity 1 30 0 31 58 0 0 chr1 53227838 53227890 -228965774 + GC_rich Low_complexity Low_complexity 1 52 0 218 226 11 54 chr1 53228280 53228373 -228965291 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 180 0 0 0 chr1 53228689 53228709 -228964955 + (CA)n Simple_repeat Simple_repeat 1 20 0 218 278 0 0 chr1 53231540 53231594 -228962070 + GA-rich Low_complexity Low_complexity 1 54 0 229 205 12 24 chr1 53232179 53232262 -228961402 + GA-rich Low_complexity Low_complexity 4 85 0 245 184 26 40 chr1 53233454 53233530 -228960134 + C-rich Low_complexity Low_complexity 2 76 0 205 192 19 0 chr1 53234387 53234439 -228959225 + C-rich Low_complexity Low_complexity 4 56 0 473 291 109 6 chr1 53235147 53235322 -228958342 - MIR SINE MIR -41 221 29 310 225 125 0 chr1 53235526 53235606 -228958058 + MIR SINE MIR 98 187 -75 253 355 47 0 chr1 53235715 53235846 -228957818 - MIR SINE MIR -69 139 2 243 326 0 22 chr1 53236183 53236272 -228957392 + MIR SINE MIR 34 120 -88 216 304 22 72 chr1 53236317 53236514 -228957150 - L2 LINE L2 -262 3051 2871 426 330 51 29 chr1 53236623 53236795 -228956869 - L2 LINE L2 -641 2673 2506 2405 93 0 0 chr1 53236795 53237096 -228956568 + AluSc SINE Alu 1 301 -8 426 330 51 29 chr1 53237096 53237274 -228956390 - L2 LINE L2 -808 2506 2315 767 237 100 5 chr1 53238091 53238281 -228955383 - MIR SINE MIR -22 240 33 412 293 29 40 chr1 53238303 53238477 -228955187 + MIR SINE MIR 21 192 -70 757 165 118 12 chr1 53238686 53238856 -228954808 + MER5A DNA MER1_type 1 188 -1 2316 111 0 7 chr1 53238922 53239085 -228954579 - AluSx SINE Alu -16 296 134 2344 115 0 3 chr1 53239085 53239389 -228954275 - AluSx SINE Alu -9 303 1 2316 111 0 7 chr1 53239389 53239523 -228954141 - AluSx SINE Alu -178 134 1 181 246 87 14 chr1 53239903 53239972 -228953692 - MIR SINE MIR -75 187 114 2624 202 77 30 chr1 53240139 53240696 -228952968 + L1ME2 LINE L1 5353 5957 -207 2133 92 82 0 chr1 53240696 53240977 -228952687 - AluSq SINE Alu -9 304 1 2624 202 77 30 chr1 53240977 53241185 -228952479 + L1ME2 LINE L1 5957 6154 -10 209 283 9 38 chr1 53241598 53241704 -228951960 + (TCTCTG)n Simple_repeat Simple_repeat 6 108 0 503 224 58 45 chr1 53242048 53242204 -228951460 + MIR SINE MIR 1 158 -104 1838 87 0 4 chr1 53242208 53242438 -228951226 + AluSx SINE Alu 1 229 -83 1440 102 16 0 chr1 53242462 53242649 -228951015 - AluSq SINE Alu -92 221 32 622 74 0 0 chr1 53242692 53242773 -228950891 - AluSg/x SINE Alu -15 295 215 207 157 39 20 chr1 53242780 53242831 -228950833 + MIR SINE MIR 94 145 -63 214 215 77 31 chr1 53242846 53242911 -228950753 - L2 LINE L2 -1 3271 3204 2476 73 3 0 chr1 53243074 53243374 -228950290 - AluY SINE Alu -10 301 1 386 232 27 36 chr1 53244276 53244388 -228949276 + MIR SINE MIR 21 131 -131 868 152 0 0 chr1 53244434 53244559 -228949105 + AluJb SINE Alu 1 125 -187 652 247 123 14 chr1 53244560 53244779 -228948885 + MIR SINE MIR 20 262 0 213 274 0 41 chr1 53245218 53245291 -228948373 + L2 LINE L2 3188 3257 -15 195 211 0 77 chr1 53245308 53245360 -228948304 - L2 LINE L2 -76 3196 3149 341 42 0 21 chr1 53245412 53245460 -228948204 + (TTTTC)n Simple_repeat Simple_repeat 2 48 0 1105 152 83 46 chr1 53245460 53245677 -228947987 - AluJo SINE Alu -87 225 1 416 299 84 7 chr1 53245977 53246131 -228947533 + MIR3 SINE MIR 33 198 -10 336 294 200 12 chr1 53246689 53246849 -228946815 - MIR3 SINE MIR -3 205 16 245 311 176 0 chr1 53247111 53247230 -228946434 + L2 LINE L2 3127 3266 -6 189 276 69 69 chr1 53247309 53247483 -228946181 + MIR SINE MIR 48 221 -41 203 250 0 19 chr1 53247879 53247931 -228945733 + L2 LINE L2 3015 3065 -207 334 261 85 46 chr1 53248014 53248067 -228945597 + MIR SINE MIR 92 141 -121 2558 118 38 14 chr1 53248067 53248285 -228945379 - MSTC LTR MaLR 0 428 217 1958 96 118 0 chr1 53248285 53248556 -228945108 - AluSc SINE Alu -6 303 1 2558 118 38 14 chr1 53248556 53248754 -228944910 - MSTC LTR MaLR -211 217 2 334 261 85 46 chr1 53248754 53248853 -228944811 + MIR SINE MIR 141 250 -12 2273 105 7 0 chr1 53249337 53249631 -228944033 - AluSx SINE Alu -16 296 1 470 127 0 0 chr1 53249719 53249790 -228943874 - MSTB LTR MaLR 0 428 358 772 171 123 48 chr1 53249814 53250001 -228943663 - MSTB LTR MaLR -227 201 1 2307 96 7 7 chr1 53250159 53250461 -228943203 + AluSx SINE Alu 1 302 -10 1478 198 56 72 chr1 53251160 53251449 -228942215 + L1MD3 LINE L1 5818 6110 -1885 2188 107 7 0 chr1 53251449 53251730 -228941934 + AluSg SINE Alu 9 291 -19 2069 148 3 0 chr1 53251736 53252039 -228941625 + AluSx SINE Alu 1 304 -8 1478 198 56 72 chr1 53252039 53252270 -228941394 + L1MD3 LINE L1 6115 7976 -19 2315 86 7 0 chr1 53252700 53252991 -228940673 + AluSp SINE Alu 1 293 -20 1937 181 0 9 chr1 53254261 53254576 -228939088 + AluJo SINE Alu 1 312 0 414 0 0 0 chr1 53254941 53254987 -228938677 + (CA)n Simple_repeat Simple_repeat 2 47 0 536 166 16 171 chr1 53255091 53255278 -228938386 - FRAM SINE Alu -18 158 1 255 211 42 28 chr1 53255285 53255356 -228938308 - MIR SINE MIR -15 247 176 467 236 84 118 chr1 53255356 53255652 -228938012 + L2 LINE L2 3027 3312 -1 334 243 122 27 chr1 53255656 53255804 -228937860 - MIR SINE MIR -100 162 1 2458 89 0 6 chr1 53256059 53256373 -228937291 + AluSx SINE Alu 1 312 0 1985 144 10 23 chr1 53256692 53256997 -228936667 - AluJb SINE Alu -11 301 1 654 183 16 32 chr1 53257173 53257299 -228936365 + FLAM_A SINE Alu 3 126 -7 1242 141 26 5 chr1 53257540 53257731 -228935933 + AluJb SINE Alu 108 302 -10 2308 99 0 0 chr1 53258508 53258802 -228934862 + AluSg SINE Alu 6 299 -11 2073 90 4 14 chr1 53258875 53259153 -228934511 + AluSp SINE Alu 1 275 -38 250 336 42 56 chr1 53259164 53259307 -228934357 - L2 LINE L2 -211 3061 2921 827 192 6 84 chr1 53259518 53259685 -228933979 + FRAM SINE Alu 9 162 -14 358 274 86 115 chr1 53259845 53260079 -228933585 + L2 LINE L2 3046 3272 0 313 248 124 20 chr1 53260134 53260287 -228933377 + L1ME LINE L1 5561 5729 -392 866 269 100 19 chr1 53260394 53260714 -228932950 + L1MC4a LINE L1 5520 5865 -1943 1793 157 16 19 chr1 53260749 53261062 -228932602 + AluJo SINE Alu 1 312 0 2408 75 7 0 chr1 53261155 53261448 -228932216 - AluY SINE Alu -16 295 1 2225 86 7 16 chr1 53261448 53261751 -228931913 - AluSg SINE Alu -10 300 1 21 71 0 0 chr1 53261850 53261892 -228931772 + AT_rich Low_complexity Low_complexity 1 42 0 37 0 0 0 chr1 53262384 53262421 -228931243 + AT_rich Low_complexity Low_complexity 1 37 0 1752 154 33 23 chr1 53262753 53263058 -228930606 + AluJo SINE Alu 1 308 -4 2214 126 0 0 chr1 53263268 53263577 -228930087 + AluSx SINE Alu 1 309 -3 2163 116 3 20 chr1 53263624 53263925 -228929739 + AluSx SINE Alu 4 299 -13 1177 123 25 0 chr1 53263925 53264087 -228929577 + AluSg/x SINE Alu 134 299 -13 1429 211 24 7 chr1 53265427 53265725 -228927939 + AluJo SINE Alu 1 303 -9 2413 101 0 0 chr1 53265907 53266215 -228927449 - AluSx SINE Alu -4 308 1 950 204 11 5 chr1 53266306 53266492 -228927172 + MLT1A1 LTR MaLR 133 319 -46 22 0 0 0 chr1 53266575 53266597 -228927067 + AT_rich Low_complexity Low_complexity 1 22 0 2179 132 0 0 chr1 53267120 53267423 -228926241 + AluSx SINE Alu 5 307 -5 1558 163 66 28 chr1 53267629 53267661 -228926003 - AluJb SINE Alu -11 301 272 2299 93 6 16 chr1 53267661 53267973 -228925691 + AluSx SINE Alu 1 309 -3 1558 163 66 28 chr1 53267973 53268229 -228925435 - AluJb SINE Alu -40 272 2 1103 205 4 31 chr1 53268524 53268753 -228924911 - AluJo SINE Alu -16 296 74 992 302 99 27 chr1 53268818 53269549 -228924115 + L2 LINE L2 2521 3305 -8 1566 134 131 8 chr1 53269585 53269853 -228923811 + AluSg1 SINE Alu 1 301 -8 1010 143 0 0 chr1 53269871 53270038 -228923626 - AluSg/x SINE Alu 0 299 133 487 241 123 9 chr1 53270095 53270307 -228923357 - L1MC5 LINE L1 -48 7913 7678 2035 127 3 3 chr1 53270334 53270633 -228923031 + AluSx SINE Alu 8 306 -6 2011 133 0 11 chr1 53270635 53270963 -228922701 + AluSq SINE Alu 1 325 0 2271 64 27 14 chr1 53270975 53271270 -228922394 + AluY SINE Alu 2 300 -11 1058 166 58 0 chr1 53271544 53271749 -228921915 + L1MA7 LINE L1 6070 6286 -5 1914 118 45 14 chr1 53272117 53272405 -228921259 + AluJb SINE Alu 1 297 -15 351 0 0 0 chr1 53272418 53272457 -228921207 + (CA)n Simple_repeat Simple_repeat 2 40 0 1995 162 0 3 chr1 53272833 53273141 -228920523 - AluJb SINE Alu -5 307 1 248 324 0 0 chr1 53273338 53273406 -228920258 + MER113 DNA MER1_type? 454 521 0 2036 110 45 17 chr1 53273451 53273741 -228919923 + AluSg SINE Alu 3 300 -10 1066 160 0 31 chr1 53273806 53274000 -228919664 + AluSg/x SINE Alu 122 309 -1 1493 174 0 16 chr1 53274611 53274869 -228918795 - AluJb SINE Alu -15 297 44 462 293 56 60 chr1 53275128 53275343 -228918321 - MIR SINE MIR 0 262 49 3018 154 36 8 chr1 53275367 53275888 -228917776 - L1MB7 LINE L1 -19 6165 5630 259 304 157 10 chr1 53276063 53276165 -228917499 + MIR SINE MIR 11 127 -135 314 280 53 60 chr1 53276209 53276359 -228917305 - MIR SINE MIR -13 249 101 2198 63 60 11 chr1 53276495 53276779 -228916885 - AluY SINE Alu -13 298 1 1918 130 22 0 chr1 53277033 53277331 -228916333 + AluSx SINE Alu 2 305 0 2333 71 0 0 chr1 53277490 53277791 -228915873 + AluY SINE Alu 2 302 0 1817 176 0 7 chr1 53277793 53278089 -228915575 - AluJb SINE Alu -18 294 1 2307 100 3 0 chr1 53278165 53278464 -228915200 - AluSx SINE Alu -12 300 1 234 91 0 0 chr1 53278559 53278592 -228915072 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 2221 108 3 19 chr1 53278688 53279002 -228914662 + AluSq SINE Alu 1 309 -4 270 293 104 47 chr1 53279159 53279265 -228914399 - L2 LINE L2 -1 3271 3160 805 314 48 57 chr1 53279300 53279868 -228913796 - L2 LINE L2 -298 3015 2403 284 221 47 12 chr1 53279885 53279971 -228913693 - MIR SINE MIR 0 262 174 282 246 16 0 chr1 53280052 53280113 -228913551 - MIR SINE MIR -114 148 87 7234 88 5 9 chr1 53280213 53281180 -228912484 + HERV17 LTR ERV1 841 1803 -6823 490 81 0 0 chr1 53281261 53281323 -228912341 - AluY SINE Alu -229 82 21 682 315 60 4 chr1 53282180 53282415 -228911249 - MIR SINE MIR -2 260 13 1787 167 0 0 chr1 53282801 53283108 -228910556 - AluSx SINE Alu 0 307 1 219 309 0 36 chr1 53283276 53283360 -228910304 + L3 LINE CR1 1042 1122 -455 44027 48 3 1 chr1 53283489 53289627 -228904037 - L1PA4 LINE L1 -3 6152 2 2151 116 3 3 chr1 53290028 53290330 -228903334 + AluSg SINE Alu 1 302 -8 2210 118 16 0 chr1 53290350 53290654 -228903010 + AluSq SINE Alu 1 309 -4 207 162 0 0 chr1 53290665 53290702 -228902962 + GA-rich Low_complexity Low_complexity 4 40 0 382 258 81 0 chr1 53291091 53291215 -228902449 + MLT1-int LTR MaLR 1238 1371 0 1234 237 103 19 chr1 53291215 53291633 -228902031 + MLT1D LTR MaLR 1 453 -52 363 136 0 0 chr1 53291651 53291710 -228901954 + (TC)n Simple_repeat Simple_repeat 2 60 0 702 226 8 8 chr1 53291720 53291853 -228901811 - FLAM_A SINE Alu 0 133 1 986 237 13 0 chr1 53291904 53292136 -228901528 + MLT1D-int LTR MaLR 1 235 -1136 441 228 46 70 chr1 53292204 53292449 -228901215 + MLT1D-int LTR MaLR 1238 1371 0 1593 243 36 38 chr1 53292449 53292951 -228900713 + MLT1D LTR MaLR 1 501 -4 637 271 85 34 chr1 53293840 53294076 -228899588 - MIR SINE MIR -2 260 13 10412 37 2 8 chr1 53294590 53295902 -228897762 - L1P LINE L1 -726 5429 4125 373 188 153 0 chr1 53295917 53296002 -228897662 + L1M4 LINE L1 2680 2777 -3369 23 68 0 0 chr1 53296079 53296123 -228897541 + AT_rich Low_complexity Low_complexity 1 44 0 713 110 25 17 chr1 53296280 53296398 -228897266 - L1PA4 LINE L1 0 6155 6037 10796 28 2 2 chr1 53296400 53298208 -228895456 + L1PA5 LINE L1 4121 5928 -226 2398 81 3 0 chr1 53398241 53398548 -228795116 - AluY SINE Alu -3 308 1 1719 189 0 10 chr1 53399178 53399480 -228794184 + AluJo SINE Alu 7 305 -7 762 160 24 0 chr1 53399638 53399763 -228793901 + MSTD LTR MaLR 1 128 -268 2133 132 7 0 chr1 53399801 53400105 -228793559 + AluSq SINE Alu 1 306 -7 322 170 0 0 chr1 53400165 53400212 -228793452 + MSTD LTR MaLR 235 281 -115 570 275 71 75 chr1 53400214 53400318 -228793346 + L1MC4a LINE L1 4410 4513 -1633 2494 63 0 13 chr1 53400318 53400620 -228793044 + AluY SINE Alu 1 298 -13 1981 157 0 0 chr1 53400624 53400917 -228792747 + AluSx SINE Alu 1 293 -19 570 275 71 75 chr1 53400917 53401633 -228792031 + L1MC4a LINE L1 4516 5232 -914 2133 120 7 10 chr1 53401680 53401972 -228791692 + AluSx SINE Alu 1 291 -21 1775 120 124 0 chr1 53401972 53402239 -228791425 + AluSg SINE Alu 1 300 0 2096 132 17 0 chr1 53402239 53402526 -228791138 + AluSx SINE Alu 1 292 -20 554 258 136 48 chr1 53402588 53402973 -228790691 + L1MC4a LINE L1 5461 5786 -335 1735 153 14 28 chr1 53403254 53403542 -228790122 - AluJo SINE Alu -28 284 1 2173 110 0 0 chr1 53403568 53403859 -228789805 + AluSx SINE Alu 1 291 -21 2344 154 59 39 chr1 53405240 53405421 -228788243 + L1MB4 LINE L1 5143 5319 -861 2173 139 0 3 chr1 53405421 53405731 -228787933 - AluSx SINE Alu -3 309 1 2344 154 59 39 chr1 53405731 53406206 -228787458 + L1MB4 LINE L1 5319 5870 -310 246 280 182 15 chr1 53406453 53406585 -228787079 + MIR3 SINE MIR 34 187 -21 1783 165 58 15 chr1 53407193 53407520 -228786144 + MER58B DNA MER1_type 1 341 0 181 245 94 0 chr1 53408263 53408316 -228785348 - L2 LINE L2 -64 3208 3151 835 192 42 26 chr1 53408332 53408525 -228785139 + MER63A DNA MER1_type 15 210 0 384 315 19 37 chr1 53408584 53408746 -228784918 - L2 LINE L2 -160 3112 2954 504 228 153 97 chr1 53409055 53409323 -228784341 + MLT1I LTR MaLR 109 391 -18 199 260 96 48 chr1 53409711 53409815 -228783849 - L2 LINE L2 -45 3227 3119 591 311 25 42 chr1 53410178 53410419 -228783245 + MIR SINE MIR 6 242 -20 587 283 125 48 chr1 53411046 53411438 -228782226 + L2 LINE L2 2851 3272 0 391 228 105 74 chr1 53411669 53411831 -228781833 - MIR3 SINE MIR -2 206 40 221 333 39 20 chr1 53412040 53412142 -228781522 + MIR SINE MIR 50 153 -55 239 180 100 0 chr1 53412154 53412204 -228781460 + MER117 DNA MER1_type 7 61 -136 402 308 182 0 chr1 53412682 53412825 -228780839 + MIR SINE MIR 46 214 -48 1986 142 44 0 chr1 53412862 53413157 -228780507 + AluSx SINE Alu 5 312 0 690 262 33 28 chr1 53414472 53414686 -228778978 + MIR SINE MIR 48 262 0 411 258 0 0 chr1 53416801 53416894 -228776770 - MIR3 SINE MIR -18 190 98 223 258 92 129 chr1 53417297 53417568 -228776096 + L3 LINE CR1 1143 1403 -174 229 305 164 6 chr1 53417646 53417823 -228775841 - L3 LINE CR1 -530 1047 843 188 263 0 0 chr1 53417939 53417977 -228775687 - L3 LINE CR1 -952 625 588 350 174 340 14 chr1 53418625 53418769 -228774895 - MIR3 SINE MIR -13 195 5 1608 163 7 0 chr1 53418844 53419121 -228774543 - MLT1C LTR MaLR -2 465 187 243 267 11 22 chr1 53419127 53419217 -228774447 + (TTCA)n Simple_repeat Simple_repeat 4 92 0 999 298 70 36 chr1 53419250 53419636 -228774028 - L2 LINE L2 0 3313 2915 2052 143 36 0 chr1 53419687 53419988 -228773676 + AluSx SINE Alu 1 312 0 204 40 0 0 chr1 53419991 53420016 -228773648 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 605 271 188 3 chr1 53420062 53420398 -228773266 - LTR33 LTR ERVL -112 409 12 237 206 99 154 chr1 53420908 53421056 -228772608 + MIR SINE MIR 16 153 -70 588 223 91 114 chr1 53421109 53421450 -228772214 + MLT1J2 LTR MaLR 1 333 -117 2056 136 7 16 chr1 53422089 53422398 -228771266 + AluJb SINE Alu 1 306 -6 327 252 29 29 chr1 53422562 53422665 -228770999 + MLT1J2 LTR MaLR 347 449 -1 213 211 19 0 chr1 53422711 53422771 -228770893 - L2 LINE L2 -415 2857 2798 196 363 104 37 chr1 53423139 53423274 -228770390 - MIR3 SINE MIR -9 199 56 238 269 56 22 chr1 53423275 53423432 -228770232 + MIR SINE MIR 33 246 -16 311 208 0 21 chr1 53423661 53423757 -228769907 + GA-rich Low_complexity Low_complexity 3 96 0 180 236 127 0 chr1 53424744 53424799 -228768865 - L2 LINE L2 -7 3265 3204 335 333 0 10 chr1 53425100 53425196 -228768468 - L2 LINE L2 -218 3054 2960 362 285 118 28 chr1 53425284 53425428 -228768236 - MIR3 SINE MIR -21 187 31 359 260 31 170 chr1 53426420 53426643 -228767021 - MER91A DNA MER1_type -1 195 4 203 159 0 68 chr1 53426605 53426649 -228767015 + MER91 DNA MER1_type 100 140 0 * 359 252 128 24 chr1 53427277 53427445 -228766219 - MIR3 SINE MIR -76 186 4 586 304 96 63 chr1 53427651 53428049 -228765615 + L2 LINE L2 2830 3240 -32 183 222 0 0 chr1 53428081 53428126 -228765538 + (TGGA)n Simple_repeat Simple_repeat 4 48 0 2409 107 0 0 chr1 53428266 53428576 -228765088 + AluSx SINE Alu 1 310 -2 233 348 0 22 chr1 53428679 53428771 -228764893 - L2 LINE L2 -494 2820 2731 2180 141 36 30 chr1 53428933 53429295 -228764369 - THE1B LTR MaLR 0 364 1 12365 81 15 0 chr1 53429295 53430852 -228762812 - THE1B-int LTR MaLR 0 1580 1 2072 150 39 28 chr1 53430852 53431212 -228762452 - THE1B LTR MaLR 0 364 1 1532 254 134 24 chr1 53431526 53431573 -228762091 - MLT2F LTR ERVL -15 648 608 1581 198 13 3 chr1 53431573 53431876 -228761788 + AluJb SINE Alu 5 310 -2 1532 254 134 24 chr1 53431876 53432410 -228761254 - MLT2F LTR ERVL -55 608 3 314 289 67 0 chr1 53432411 53432515 -228761149 - L2 LINE L2 -31 3282 3172 409 241 190 36 chr1 53432594 53432789 -228760875 - MLT1J LTR MaLR 0 511 287 873 100 0 0 chr1 53432827 53432937 -228760727 + AluSg/x SINE Alu 167 276 -36 659 271 106 0 chr1 53432948 53433136 -228760528 - MLT1J LTR MaLR -286 225 18 293 290 121 10 chr1 53433155 53433283 -228760381 + MIR SINE MIR 11 151 -57 762 212 13 13 chr1 53433284 53433435 -228760229 - MIR SINE MIR -26 236 86 407 256 70 23 chr1 53433436 53433565 -228760099 - L2 LINE L2 -1 3271 3137 3851 78 33 0 chr1 53433668 53434184 -228759480 - L1PA10 LINE L1 -1 6167 5635 355 218 0 46 chr1 53434445 53434532 -228759132 - MIR SINE MIR -105 157 75 2251 80 3 7 chr1 53436247 53436536 -228757128 - AluSc SINE Alu -21 288 1 379 279 157 7 chr1 53436546 53436693 -228756971 + MIR SINE MIR 32 200 -62 315 341 24 0 chr1 53437024 53437147 -228756517 - L2 LINE L2 -227 3045 2920 233 320 13 27 chr1 53437492 53437567 -228756097 + MIR SINE MIR 26 99 -109 300 193 35 0 chr1 53437729 53437786 -228755878 - MIR3 SINE MIR -41 167 109 345 312 142 10 chr1 53437829 53438034 -228755630 - L2 LINE L2 -224 3048 2817 234 291 112 8 chr1 53438599 53438733 -228754931 + MIR SINE MIR 44 191 -71 187 177 10 52 chr1 53439035 53439131 -228754533 + C-rich Low_complexity Low_complexity 2 93 0 184 167 9 61 chr1 53439514 53439628 -228754036 + GA-rich Low_complexity Low_complexity 2 109 0 215 359 22 0 chr1 53439776 53439868 -228753796 - MIR SINE MIR -81 127 34 250 354 128 35 chr1 53440079 53440336 -228753328 - L2 LINE L2 -2 3270 2990 200 118 373 0 chr1 53440644 53440695 -228752969 - MIR SINE MIR -112 150 81 341 181 0 48 chr1 53440714 53440797 -228752867 - MIR SINE MIR -12 250 172 449 260 74 60 chr1 53440948 53441356 -228752308 - MLT1J LTR MaLR -32 479 18 311 294 16 80 chr1 53441360 53441459 -228752205 + L2 LINE L2 2989 3072 -200 2213 126 3 0 chr1 53441459 53441761 -228751903 - AluSx SINE Alu -9 303 1 311 294 16 80 chr1 53441761 53441848 -228751816 + L2 LINE L2 3072 3163 -109 191 237 0 0 chr1 53441883 53441921 -228751743 - L2 LINE L2 -22 3250 3213 288 0 0 0 chr1 53441931 53441963 -228751701 + (TTG)n Simple_repeat Simple_repeat 2 33 0 943 116 0 0 chr1 53441964 53442085 -228751579 - AluJb SINE Alu -190 122 2 182 239 22 0 chr1 53442088 53442134 -228751530 - MIR SINE MIR -48 214 168 * 322 333 96 32 chr1 53442108 53442264 -228751400 + MIR SINE MIR 97 262 0 1132 164 161 33 chr1 53442456 53442760 -228750904 - MER2 DNA MER2_type 0 344 2 643 305 74 26 chr1 53443476 53443866 -228749798 + HsTC2 DNA Tc2 482 890 -1008 201 74 0 0 chr1 53444179 53444206 -228749458 + (TAA)n Simple_repeat Simple_repeat 3 29 0 435 258 174 6 chr1 53444214 53444381 -228749283 - MIR SINE MIR 0 262 68 264 329 20 7 chr1 53444425 53444577 -228749087 + CT-rich Low_complexity Low_complexity 2 155 0 280 195 0 24 chr1 53444654 53444736 -228748928 + CT-rich Low_complexity Low_complexity 5 84 0 206 261 209 30 chr1 53445088 53445222 -228748442 + MIR SINE MIR 100 257 -5 774 240 88 64 chr1 53445333 53445470 -228748194 + MLT1H LTR MaLR 17 149 -400 1569 85 28 24 chr1 53445470 53445717 -228747947 + L1PB2 LINE L1 5904 6151 0 774 240 88 64 chr1 53445717 53445918 -228747746 + MLT1H LTR MaLR 149 344 -205 1851 201 92 72 chr1 53445918 53446449 -228747215 - MLT1F LTR MaLR 0 542 1 774 240 88 64 chr1 53446449 53446587 -228747077 + MLT1H LTR MaLR 344 549 0 192 356 20 40 chr1 53447081 53447182 -228746482 - MIR SINE MIR -93 115 17 318 333 39 58 chr1 53447467 53447623 -228746041 - L3 LINE CR1 -5 1572 1420 500 297 62 26 chr1 53447638 53447830 -228745834 + MIR SINE MIR 32 230 -32 1770 193 3 0 chr1 53448245 53448550 -228745114 + AluJb SINE Alu 6 311 -1 231 259 37 0 chr1 53448939 53449020 -228744644 + LTR33 LTR ERVL 11 94 -427 537 241 0 70 chr1 53449148 53449275 -228744389 + LTR33 LTR ERVL 344 455 -66 1454 159 8 4 chr1 53449275 53449527 -228744137 + L1MB3 LINE L1 5931 6183 0 537 241 0 70 chr1 53449527 53449586 -228744078 + LTR33 LTR ERVL 455 517 -4 1788 171 13 69 chr1 53449760 53450152 -228743512 + MLT1A2 LTR MaLR 1 370 -4 405 209 136 0 chr1 53450305 53450415 -228743249 + MIR SINE MIR 27 151 -57 567 284 93 23 chr1 53451445 53451660 -228742004 - MIR SINE MIR -16 246 17 425 311 24 2 chr1 53452068 53452234 -228741430 + MIR3 SINE MIR 15 183 -64 221 366 40 0 chr1 53452820 53452921 -228740743 - MIR SINE MIR -72 190 86 224 234 156 13 chr1 53453065 53453142 -228740522 - L2 LINE L2 -85 3187 3100 315 154 26 51 chr1 53453210 53453288 -228740376 - L1ME2 LINE L1 -145 6019 5944 2100 128 6 10 chr1 53453293 53453606 -228740058 - AluSx SINE Alu 0 312 1 595 329 20 20 chr1 53453780 53454029 -228739635 - MIR SINE MIR -10 252 4 207 177 76 127 chr1 53454029 53454100 -228739564 + L2 LINE L2 3247 3313 0 2095 161 33 35 chr1 53454171 53454537 -228739127 - MLT1A1 LTR MaLR 0 365 1 233 329 51 37 chr1 53454548 53454764 -228738900 - L2 LINE L2 -237 3035 2817 181 315 92 31 chr1 53454837 53454967 -228738697 - L2 LINE L2 -997 2317 2180 341 368 71 0 chr1 53455056 53455211 -228738453 - MIR SINE MIR -78 184 19 182 179 205 0 chr1 53455478 53455517 -228738147 + L3 LINE CR1 1425 1471 -106 2235 122 0 0 chr1 53455981 53456277 -228737387 + AluSx SINE Alu 1 296 -16 1648 100 90 21 chr1 53456277 53456567 -228737097 - THE1C LTR MaLR -65 310 1 364 267 37 44 chr1 53456662 53456797 -228736867 - L2 LINE L2 -213 3059 2926 205 277 0 75 chr1 53456903 53456997 -228736667 + MIR3 SINE MIR 107 193 -15 869 222 6 0 chr1 53457779 53457946 -228735718 + MIR SINE MIR 73 240 -22 343 214 51 60 chr1 53457945 53458062 -228735602 - MIR3 SINE MIR -91 117 2 * 604 225 130 0 chr1 53458287 53458456 -228735208 - MLT1H1 LTR MaLR -107 448 258 240 235 15 44 chr1 53458490 53458558 -228735106 - MLT1H1 LTR MaLR -288 267 202 1156 216 232 35 chr1 53458600 53459053 -228734611 + MLT1E LTR MaLR 1 481 -112 909 134 25 13 chr1 53459055 53459212 -228734452 - MSTB2 LTR MaLR -298 159 1 187 333 53 35 chr1 53459574 53459688 -228733976 + MIR SINE MIR 35 150 -112 586 271 182 0 chr1 53459931 53460178 -228733486 + L2 LINE L2 3022 3313 0 253 257 18 0 chr1 53460527 53460636 -228733028 + (TGAA)n Simple_repeat Simple_repeat 3 113 0 * 288 217 29 17 chr1 53460611 53460786 -228732878 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 381 312 93 19 chr1 53460787 53461056 -228732608 + L3 LINE CR1 1133 1421 -156 655 256 78 0 chr1 53461429 53461609 -228732055 + MIR SINE MIR 57 250 -12 349 283 126 37 chr1 53463049 53463240 -228730424 - MIR SINE MIR -29 233 26 31 68 0 0 chr1 53464254 53464313 -228729351 + GC_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr1 53464600 53464628 -228729036 + GC_rich Low_complexity Low_complexity 1 28 0 221 189 38 88 chr1 53465087 53465195 -228728469 + MIR SINE MIR 18 155 -107 203 237 0 0 chr1 53465227 53465265 -228728399 + MIR SINE MIR 222 259 -3 219 250 96 29 chr1 53465424 53465528 -228728136 - L2 LINE L2 -285 2987 2877 254 351 0 0 chr1 53465698 53465792 -228727872 + (TG)n Simple_repeat Simple_repeat 1 94 0 214 355 25 41 chr1 53466199 53466320 -228727344 + MIR3 SINE MIR 1 119 -89 521 228 49 8 chr1 53466492 53466615 -228727049 + L2 LINE L2 3186 3313 0 310 321 164 16 chr1 53466757 53467068 -228726596 + L2 LINE L2 1211 1567 -1747 622 258 16 66 chr1 53467128 53467218 -228726446 - MER112 DNA MER1_type -11 249 156 2018 145 0 7 chr1 53467218 53467508 -228726156 + AluJo SINE Alu 5 292 -20 622 258 16 66 chr1 53467508 53467673 -228725991 - MER112 DNA MER1_type -104 156 7 3636 19 0 0 chr1 53467749 53468166 -228725498 + L1PA4 LINE L1 5737 6153 -2 479 278 197 50 chr1 53468297 53468403 -228725261 + L2 LINE L2 1697 1786 -1528 2306 119 3 0 chr1 53468403 53468705 -228724959 + AluSq SINE Alu 1 303 -10 479 278 197 50 chr1 53468705 53469421 -228724243 + L2 LINE L2 1786 2640 -674 393 267 130 19 chr1 53469923 53470084 -228723580 + MIR3 SINE MIR 6 184 -24 853 133 31 71 chr1 53470182 53470346 -228723318 - MER53 DNA DNA 0 189 33 194 0 0 37 chr1 53470346 53470373 -228723291 + (TTA)n Simple_repeat Simple_repeat 2 27 0 853 133 31 71 chr1 53470373 53470404 -228723260 - MER53 DNA DNA -156 33 2 349 254 67 67 chr1 53470503 53470696 -228722968 - L2 LINE L2 -290 3023 2831 425 289 60 7 chr1 53471236 53471385 -228722279 - MIR SINE MIR -57 205 49 826 161 7 0 chr1 53471389 53471572 -228722092 + AluJb SINE Alu 147 330 0 347 283 98 9 chr1 53471776 53471956 -228721708 + MIR SINE MIR 10 212 -50 481 237 200 0 chr1 53472140 53472275 -228721389 - L2 LINE L2 0 3272 3111 420 187 216 30 chr1 53472413 53472547 -228721117 - L2 LINE L2 0 3313 3155 210 325 25 94 chr1 53472649 53472852 -228720812 - L2 LINE L2 -135 3178 2990 2686 260 82 20 chr1 53472854 53473666 -228719998 + L1ME2 LINE L1 2936 3833 -2313 492 72 0 0 chr1 53473666 53473735 -228719929 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2686 260 82 20 chr1 53473735 53474004 -228719660 + L1ME2 LINE L1 3833 4084 -2062 1549 218 65 14 chr1 53474002 53474448 -228719216 + L1ME2 LINE L1 4722 5190 -956 * 2657 155 115 116 chr1 53475024 53475294 -228718370 + L1ME2 LINE L1 5255 5524 -640 1662 185 13 45 chr1 53475294 53475607 -228718057 + AluJo SINE Alu 1 303 -9 2657 155 115 116 chr1 53475607 53476034 -228717630 + L1ME2 LINE L1 5524 5953 -211 2329 101 0 0 chr1 53476034 53476332 -228717332 + AluSx SINE Alu 1 298 -14 2657 155 115 116 chr1 53476332 53476544 -228717120 + L1ME2 LINE L1 5953 6164 0 930 195 0 6 chr1 53476556 53476720 -228716944 + FRAM SINE Alu 1 163 -13 180 305 0 17 chr1 53476772 53476831 -228716833 - L2 LINE L2 -248 3065 3008 269 246 16 0 chr1 53477090 53477151 -228716513 + L2 LINE L2 3202 3263 -9 519 242 96 45 chr1 53477986 53478184 -228715480 + MER63A DNA MER1_type 3 210 0 269 241 0 0 chr1 53478253 53478307 -228715357 - L2 LINE L2 -5 3267 3214 639 232 125 0 chr1 53478340 53478508 -228715156 - MIR SINE MIR 0 262 74 852 291 162 19 chr1 53478554 53478973 -228714691 + LTR67 LTR ERVL 71 549 -8 263 365 28 0 chr1 53479048 53479155 -228714509 - MIR SINE MIR -71 191 82 266 182 212 0 chr1 53479155 53479221 -228714443 + MER116 DNA Mariner 1 80 0 311 307 61 31 chr1 53479587 53479815 -228713849 - L2 LINE L2 -161 3111 2877 812 311 106 78 chr1 53479857 53481006 -228712658 - L2 LINE L2 0 3313 2126 1057 263 55 53 chr1 53481605 53481985 -228711679 + L2 LINE L2 2921 3301 -12 293 276 124 2 chr1 53482004 53482135 -228711529 + MIR SINE MIR 3 145 -63 212 321 9 28 chr1 53482620 53482726 -228710938 + L2 LINE L2 2951 3054 -218 397 271 8 49 chr1 53482815 53482937 -228710727 - L2 LINE L2 0 3313 3197 219 272 0 37 chr1 53482972 53483053 -228710611 + L2 LINE L2 3133 3210 -62 220 345 0 0 chr1 53483264 53483322 -228710342 + L2 LINE L2 3255 3312 -1 522 212 172 13 chr1 53483449 53483600 -228710064 + MER5A DNA MER1_type 13 187 -2 484 289 31 86 chr1 53484856 53485147 -228708517 - L2 LINE L2 -2 3270 2996 468 294 55 0 chr1 53485185 53485348 -228708316 + L1MC4a LINE L1 5367 5538 -628 404 295 107 43 chr1 53485584 53485818 -228707846 + L1MC4a LINE L1 5834 6082 -1726 207 337 16 73 chr1 53485966 53486212 -228707452 - L2 LINE L2 -350 2964 2733 187 328 0 15 chr1 53486247 53486314 -228707350 - MIR3 SINE MIR 0 208 143 234 293 16 73 chr1 53486373 53486496 -228707168 - MIR SINE MIR -51 211 96 454 261 67 0 chr1 53486648 53486767 -228706897 - L2 LINE L2 -5 3267 3141 997 222 78 87 chr1 53486792 53486956 -228706708 + L2 LINE L2 2863 3027 -286 1831 161 46 20 chr1 53486956 53487260 -228706404 - AluJo SINE Alu 0 312 1 997 222 78 87 chr1 53487260 53487282 -228706382 + L2 LINE L2 3027 3048 -265 1598 157 4 8 chr1 53487282 53487537 -228706127 - AluJb SINE Alu -58 254 1 997 222 78 87 chr1 53487537 53487652 -228706012 + L2 LINE L2 3048 3163 -150 195 100 0 0 chr1 53487652 53487682 -228705982 + (CA)n Simple_repeat Simple_repeat 1 30 0 997 222 78 87 chr1 53487682 53487815 -228705849 + L2 LINE L2 3163 3295 -18 433 289 58 0 chr1 53487936 53488057 -228705607 - L2 LINE L2 -4 3309 3182 271 366 0 0 chr1 53488066 53488167 -228705497 + (AGTTG)n Simple_repeat Simple_repeat 1 101 0 * 308 393 6 0 chr1 53488104 53488267 -228705397 + (AGCTG)n Simple_repeat Simple_repeat 5 168 0 226 322 11 0 chr1 53488225 53488312 -228705352 + (AGTTG)n Simple_repeat Simple_repeat 5 92 0 * 216 324 17 28 chr1 53488369 53488545 -228705119 + (AGTTG)n Simple_repeat Simple_repeat 4 177 0 648 283 72 81 chr1 53489974 53490334 -228703330 + L2 LINE L2 2916 3272 0 232 299 62 21 chr1 53490357 53490454 -228703210 - MIR SINE MIR -65 143 43 583 258 129 19 chr1 53490859 53491068 -228702596 - MIR SINE MIR -24 238 7 2121 106 35 0 chr1 53491171 53491454 -228702210 - AluSg SINE Alu -17 293 1 1090 244 131 38 chr1 53491925 53492458 -228701206 + L1MC4 LINE L1 7459 8041 -1 249 216 0 0 chr1 53492732 53492820 -228700844 + GA-rich Low_complexity Low_complexity 1 88 0 606 257 78 81 chr1 53493295 53493538 -228700126 - L2 LINE L2 -49 3264 3021 2455 63 0 17 chr1 53493538 53493838 -228699826 - AluY SINE Alu -16 295 1 606 257 78 81 chr1 53493838 53493940 -228699724 - L2 LINE L2 -292 3021 2920 578 230 84 52 chr1 53494032 53494245 -228699419 - L2 LINE L2 -619 2695 2476 510 218 20 68 chr1 53495178 53495254 -228698410 + MIR SINE MIR 68 135 -127 2796 147 69 11 chr1 53495254 53495731 -228697933 + MLT1D LTR MaLR 1 505 0 510 218 20 68 chr1 53495731 53495801 -228697863 + MIR SINE MIR 135 207 -55 226 103 0 132 chr1 53495836 53495904 -228697760 - LTR66 LTR ERVL -171 439 381 283 357 107 0 chr1 53496011 53496151 -228697513 + L2 LINE L2 3101 3255 -17 264 59 0 0 chr1 53496151 53496185 -228697479 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1986 153 0 0 chr1 53496393 53496687 -228696977 - AluJb SINE Alu -18 294 1 489 265 165 48 chr1 53496841 53497071 -228696593 - MIR SINE MIR -4 258 2 323 277 195 52 chr1 53497176 53497672 -228695992 - L2 LINE L2 -6 3266 2691 964 241 20 12 chr1 53497675 53497931 -228695733 - MIR SINE MIR -3 259 6 421 191 11 34 chr1 53498444 53498533 -228695131 + MIR SINE MIR 98 184 -78 3181 153 46 51 chr1 53498708 53499379 -228694285 - L1MA9 LINE L1 -25 6287 5620 576 240 99 14 chr1 53499485 53499662 -228694002 - MIR SINE MIR -62 146 3 1008 207 138 0 chr1 53499786 53500003 -228693661 - MIR SINE MIR 0 262 16 303 71 0 0 chr1 53500054 53500096 -228693568 + (CA)n Simple_repeat Simple_repeat 2 43 0 214 288 136 64 chr1 53501021 53501146 -228692518 + MIR3 SINE MIR 13 146 -62 185 0 40 0 chr1 53501880 53501905 -228691759 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2229 103 0 7 chr1 53501913 53502215 -228691449 - AluSg SINE Alu -10 300 1 445 322 189 17 chr1 53502789 53503090 -228690574 + L2 LINE L2 2919 3271 -1 548 53 13 0 chr1 53504521 53504597 -228689067 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 817 177 0 0 chr1 53504597 53504727 -228688937 + FLAM_C SINE Alu 2 131 -2 23 0 0 0 chr1 53504727 53504750 -228688914 + AT_rich Low_complexity Low_complexity 1 23 0 285 142 52 15 chr1 53504770 53504904 -228688760 + (TAGA)n Simple_repeat Simple_repeat 3 141 0 271 280 79 147 chr1 53504908 53505336 -228688328 - L2 LINE L2 -32 3240 2842 22 0 0 0 chr1 53505368 53505390 -228688274 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr1 53505580 53505621 -228688043 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 186 222 0 0 chr1 53505720 53505774 -228687890 + GA-rich Low_complexity Low_complexity 1 54 0 2413 106 0 0 chr1 53506013 53506325 -228687339 - AluSq SINE Alu -1 312 1 259 303 128 0 chr1 53507135 53507244 -228686420 + MIR SINE MIR 78 200 -62 390 272 81 29 chr1 53507520 53507656 -228686008 - MIR SINE MIR -109 153 11 2547 40 7 7 chr1 53507862 53508160 -228685504 + AluY SINE Alu 1 298 -13 23 0 0 0 chr1 53508342 53508365 -228685299 + AT_rich Low_complexity Low_complexity 1 23 0 194 0 0 37 chr1 53508424 53508451 -228685213 + (TAA)n Simple_repeat Simple_repeat 2 27 0 662 306 85 0 chr1 53508453 53508652 -228685012 - MIR SINE MIR -14 248 33 327 290 42 31 chr1 53509264 53509457 -228684207 + L2 LINE L2 2826 3020 -252 214 266 177 13 chr1 53509461 53509540 -228684124 - L2 LINE L2 -13 3259 3168 277 330 0 9 chr1 53511617 53511723 -228681941 + L1MC4 LINE L1 7928 8032 -10 1636 178 7 4 chr1 53511737 53512007 -228681657 - AluJo SINE Alu -41 271 1 475 255 141 27 chr1 53512214 53512457 -228681207 + MIR SINE MIR 2 262 0 244 217 67 0 chr1 53512872 53512932 -228680732 - MIR SINE MIR -5 257 194 354 274 73 50 chr1 53513003 53513176 -228680488 - MIR SINE MIR -69 139 15 2157 85 0 25 chr1 53514371 53514654 -228679010 + AluSx SINE Alu 23 298 -14 2557 51 0 0 chr1 53515106 53515400 -228678264 + AluY SINE Alu 1 294 -17 216 284 62 12 chr1 53515675 53515756 -228677908 + MIR SINE MIR 128 212 -50 1868 158 3 20 chr1 53515803 53516101 -228677563 + AluJb SINE Alu 1 293 -19 2323 105 2 60 chr1 53516239 53516409 -228677255 - L1MA6 LINE L1 -367 5933 5755 402 21 0 0 chr1 53516409 53516456 -228677208 + (TG)n Simple_repeat Simple_repeat 2 48 0 2087 117 14 0 chr1 53516456 53516737 -228676927 - AluSx SINE Alu -27 285 1 2323 105 2 60 chr1 53516737 53516966 -228676698 - L1MA6 LINE L1 -543 5757 5556 2340 91 0 10 chr1 53517013 53517311 -228676353 + AluY SINE Alu 1 295 -16 248 151 14 123 chr1 53517405 53517478 -228676186 - L2 LINE L2 0 3313 3249 2458 106 0 0 chr1 53517952 53518264 -228675400 - AluSx SINE Alu 0 312 1 464 224 39 26 chr1 53518265 53518421 -228675243 + Charlie4 DNA MER1_type 1789 1946 -15 388 274 12 83 chr1 53518451 53518619 -228675045 + MLT1J2 LTR MaLR 264 419 -31 234 286 0 61 chr1 53518747 53518845 -228674819 + L2 LINE L2 2968 3059 -213 1571 158 27 8 chr1 53519985 53520245 -228673419 + AluJo SINE Alu 39 303 -9 183 156 0 0 chr1 53520488 53520520 -228673144 + GA-rich Low_complexity Low_complexity 1 32 0 459 271 56 0 chr1 53520947 53521091 -228672573 + L2 LINE L2 3158 3309 -4 221 298 105 40 chr1 53523057 53523181 -228670483 - MIR3 SINE MIR -62 146 15 408 40 0 0 chr1 53523314 53523364 -228670300 + (CA)n Simple_repeat Simple_repeat 2 51 0 1367 141 12 0 chr1 53524012 53524253 -228669411 + L1MA5 LINE L1 6026 6269 -31 314 189 95 14 chr1 53525414 53525488 -228668176 + L2 LINE L2 3233 3312 -1 198 191 0 0 chr1 53528469 53528516 -228665148 + (AAATG)n Simple_repeat Simple_repeat 2 48 0 432 0 0 0 chr1 53529330 53529378 -228664286 + (CA)n Simple_repeat Simple_repeat 1 48 0 288 0 0 0 chr1 53529589 53529621 -228664043 + (CA)n Simple_repeat Simple_repeat 1 32 0 207 0 0 0 chr1 53531881 53531904 -228661760 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 53532830 53532852 -228660812 + GC_rich Low_complexity Low_complexity 1 22 0 222 242 16 40 chr1 53532920 53533044 -228660620 + (CGG)n Simple_repeat Simple_repeat 2 122 0 22 0 0 0 chr1 53533125 53533147 -228660517 + GC_rich Low_complexity Low_complexity 1 22 0 59 59 0 0 chr1 53533519 53533620 -228660044 + GC_rich Low_complexity Low_complexity 1 101 0 21 0 0 0 chr1 53533731 53533752 -228659912 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 53534603 53534632 -228659032 + GC_rich Low_complexity Low_complexity 1 29 0 221 276 125 33 chr1 53535377 53535529 -228658135 + MIR SINE MIR 1 166 -96 * 479 247 89 7 chr1 53535502 53535648 -228658016 + MIR SINE MIR 9 166 -96 259 336 19 19 chr1 53535757 53535864 -228657800 - MIR3 SINE MIR -51 157 51 2244 96 10 16 chr1 53536435 53536749 -228656915 - AluSp SINE Alu -1 312 1 255 289 107 16 chr1 53537044 53537165 -228656499 - MIR3 SINE MIR -67 141 10 504 210 34 25 chr1 53539907 53540026 -228653638 - MIR SINE MIR -66 142 23 1944 132 0 74 chr1 53540851 53541006 -228652658 - MER1B DNA MER1_type -2373 337 172 2108 119 0 7 chr1 53541006 53541317 -228652347 + AluSx SINE Alu 1 309 0 1944 132 0 74 chr1 53541317 53541524 -228652140 - MER1B DNA MER1_type -2538 172 1 584 189 0 16 chr1 53541577 53541704 -228651960 + MIR SINE MIR 124 248 -14 2344 107 0 19 chr1 53541704 53541840 -228651824 + AluSx SINE Alu 1 138 -174 2287 109 0 0 chr1 53541840 53542142 -228651522 + AluSc SINE Alu 1 302 -7 2344 107 0 19 chr1 53542142 53542323 -228651341 + AluSx SINE Alu 138 312 0 270 309 25 0 chr1 53542349 53542430 -228651234 + L2 LINE L2 3190 3272 0 699 275 50 18 chr1 53543189 53543411 -228650253 + MLT1K LTR MaLR 334 562 -26 618 205 60 70 chr1 53543426 53543611 -228650053 + MLT1J LTR MaLR 329 511 0 394 282 173 25 chr1 53543612 53543896 -228649768 + L3 LINE CR1 1154 1479 -98 234 279 165 0 chr1 53543950 53544029 -228649635 + MIR SINE MIR 48 139 -123 324 328 62 16 chr1 53544260 53544388 -228649276 + MIR SINE MIR 36 148 -60 257 213 0 0 chr1 53544385 53544432 -228649232 - MIR SINE MIR -212 50 4 * 779 268 62 58 chr1 53545228 53545457 -228648207 + L1MC4a LINE L1 5629 5862 -1946 2260 117 7 0 chr1 53545457 53545766 -228647898 - AluSx SINE Alu -1 311 1 779 268 62 58 chr1 53545766 53545936 -228647728 + L1MC4a LINE L1 5862 6030 -1778 181 240 80 53 chr1 53546942 53547017 -228646647 + L2 LINE L2 3158 3234 -38 228 253 202 10 chr1 53547050 53547149 -228646515 - MIR3 SINE MIR -85 123 6 471 229 45 15 chr1 53547733 53547880 -228645784 + MIR SINE MIR 13 162 -68 388 297 89 26 chr1 53547907 53548176 -228645488 - L1M4 LINE L1 -2318 3828 3543 317 256 51 8 chr1 53548462 53548579 -228645085 + L2 LINE L2 2550 2671 -643 394 281 54 70 chr1 53548590 53548775 -228644889 - L1M4 LINE L1 -3128 3018 2837 2322 92 20 0 chr1 53548785 53549077 -228644587 - AluSp SINE Alu -15 298 1 1316 182 39 84 chr1 53549542 53549850 -228643814 + AluJb SINE Alu 1 294 -18 710 192 0 0 chr1 53549859 53549979 -228643685 + FLAM_C SINE Alu 5 124 -19 2309 98 3 3 chr1 53549988 53550283 -228643381 + AluSx SINE Alu 1 295 -17 234 0 0 0 chr1 53550320 53550346 -228643318 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr1 53550381 53550404 -228643260 + AT_rich Low_complexity Low_complexity 1 23 0 271 217 217 52 chr1 53550671 53550786 -228642878 - MIR3 SINE MIR -43 165 32 644 222 65 52 chr1 53552054 53552163 -228641501 + MER119 DNA MER1_type 43 149 -434 1988 133 0 18 chr1 53552163 53552483 -228641181 + AluSx SINE Alu 1 315 0 644 222 65 52 chr1 53552483 53552585 -228641079 + MER119 DNA MER1_type 149 261 -322 1655 181 4 0 chr1 53552585 53552855 -228640809 + AluJo SINE Alu 1 271 -41 644 222 65 52 chr1 53552855 53552871 -228640793 + MER119 DNA MER1_type 261 275 -308 563 172 0 9 chr1 53552878 53552994 -228640670 + GA-rich Low_complexity Low_complexity 2 116 0 1600 108 28 0 chr1 53553011 53553224 -228640440 + AluSq SINE Alu 1 219 -94 192 200 0 0 chr1 53553226 53553271 -228640393 + G-rich Low_complexity Low_complexity 5 49 0 2240 126 3 0 chr1 53553291 53553601 -228640063 + AluSx SINE Alu 1 311 -1 522 168 84 0 chr1 53553625 53553732 -228639932 + MER119 DNA MER1_type 264 379 -204 2268 89 0 38 chr1 53553734 53554050 -228639614 + AluSg SINE Alu 1 304 -6 2019 129 42 0 chr1 53554050 53554337 -228639327 + AluSq SINE Alu 1 299 -14 557 103 0 0 chr1 53554338 53554416 -228639248 + AluY SINE Alu 2 79 -232 1561 76 0 0 chr1 53554416 53554601 -228639063 + AluY SINE Alu 116 300 -11 795 210 20 20 chr1 53554626 53554821 -228638843 + MER119 DNA MER1_type 388 582 -1 2154 104 0 4 chr1 53554876 53555154 -228638510 + AluSx SINE Alu 1 277 -35 186 43 0 0 chr1 53555160 53555183 -228638481 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 208 238 12 71 chr1 53555206 53555290 -228638374 - L2 LINE L2 -83 3230 3152 2435 107 3 0 chr1 53555296 53555606 -228638058 + AluSx SINE Alu 1 311 -1 273 284 10 49 chr1 53555790 53555892 -228637772 + L2 LINE L2 2995 3092 -180 516 169 0 0 chr1 53556010 53556099 -228637565 - FRAM SINE Alu -14 162 74 180 0 0 0 chr1 53556215 53556235 -228637429 + (TA)n Simple_repeat Simple_repeat 1 20 0 2184 93 0 7 chr1 53556237 53556543 -228637121 - AluSc SINE Alu 0 304 1 933 249 111 87 chr1 53557357 53558113 -228635551 + HAL1 LINE L1 1709 2482 -25 2263 104 7 10 chr1 53558122 53558421 -228635243 - AluSx SINE Alu -14 298 1 230 306 91 25 chr1 53559455 53559576 -228634088 - L2 LINE L2 -26 3246 3118 463 169 190 70 chr1 53559704 53559784 -228633880 - MER5A DNA MER1_type -22 167 98 692 181 0 23 chr1 53559784 53559917 -228633747 - FLAM_C SINE Alu -3 130 1 463 169 190 70 chr1 53559917 53559978 -228633686 - MER5A DNA MER1_type -91 98 9 368 279 27 9 chr1 53560016 53560127 -228633537 + L2 LINE L2 3164 3276 -37 21 0 0 0 chr1 53560556 53560577 -228633087 + AT_rich Low_complexity Low_complexity 1 21 0 210 249 18 53 chr1 53561386 53561555 -228632109 + (CGGGG)n Simple_repeat Simple_repeat 1 163 0 23 0 0 0 chr1 53561661 53561684 -228631980 + GC_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 53561706 53561741 -228631923 + GC_rich Low_complexity Low_complexity 1 35 0 2241 81 3 3 chr1 53562154 53562462 -228631202 - AluY SINE Alu -3 308 1 3107 114 49 45 chr1 53562837 53563409 -228630255 + MER4B LTR ERV1 1 574 -36 35 19 0 19 chr1 53565741 53565762 -228627902 + AT_rich Low_complexity Low_complexity 1 21 -31 2167 97 0 0 chr1 53565762 53566050 -228627614 + AluSx SINE Alu 1 288 -24 35 19 0 19 chr1 53566050 53566081 -228627583 + AT_rich Low_complexity Low_complexity 21 52 0 25 31 0 0 chr1 53566193 53566225 -228627439 + AT_rich Low_complexity Low_complexity 1 32 0 29 70 0 0 chr1 53566280 53566337 -228627327 + AT_rich Low_complexity Low_complexity 1 57 0 411 175 361 0 chr1 53566865 53566962 -228626702 - FLAM_C SINE Alu 0 133 2 2055 120 23 0 chr1 53568021 53568321 -228625343 + AluSx SINE Alu 1 307 -5 2211 96 10 0 chr1 53568560 53568863 -228624801 - AluSx SINE Alu -6 306 1 204 125 0 0 chr1 53569552 53569584 -228624080 + (A)n Simple_repeat Simple_repeat 1 32 0 357 199 37 137 chr1 53569584 53569745 -228623919 + L1ME4a LINE L1 5964 6108 -13 831 328 111 32 chr1 53570055 53570068 -228623596 - L2 LINE L2 -706 2608 2597 1533 98 0 9 chr1 53570068 53570293 -228623371 + AluSg/x SINE Alu 82 304 -5 831 328 111 32 chr1 53570293 53571133 -228622531 - L2 LINE L2 -717 2597 1687 1845 110 0 66 chr1 53571394 53571719 -228621945 - AluSg SINE Alu 0 307 3 2055 120 0 7 chr1 53571722 53572021 -228621643 - AluSx SINE Alu -15 297 1 2217 84 0 28 chr1 53572271 53572591 -228621073 + AluY SINE Alu 1 311 0 22 0 0 0 chr1 53572603 53572625 -228621039 + AT_rich Low_complexity Low_complexity 1 22 0 2362 80 0 6 chr1 53572628 53572939 -228620725 + AluSc SINE Alu 1 309 0 1608 165 14 7 chr1 53573182 53573481 -228620183 + AluJb SINE Alu 1 301 0 1283 185 133 15 chr1 53573538 53573808 -228619856 - AluJb SINE Alu 0 302 1 302 195 23 81 chr1 53574075 53574162 -228619502 + L1ME4a LINE L1 6040 6121 0 2185 90 20 0 chr1 53574244 53574545 -228619119 + AluSg SINE Alu 1 307 -3 993 189 0 16 chr1 53574548 53574733 -228618931 + AluJb SINE Alu 129 310 -2 711 178 34 0 chr1 53575318 53575436 -228618228 + FLAM_C SINE Alu 2 123 -20 2158 103 0 3 chr1 53575462 53575754 -228617910 + AluSx SINE Alu 1 291 -21 1935 127 28 0 chr1 53576285 53576576 -228617088 - AluSx SINE Alu -13 299 1 1894 167 0 0 chr1 53576837 53577136 -228616528 - AluJb SINE Alu -13 299 1 1484 191 38 0 chr1 53577427 53577715 -228615949 + AluJo SINE Alu 1 299 -13 288 148 90 19 chr1 53577716 53577871 -228615793 + (TA)n Simple_repeat Simple_repeat 2 167 0 2237 74 10 3 chr1 53577871 53578169 -228615495 + AluY SINE Alu 1 300 -11 1963 128 0 0 chr1 53578532 53578820 -228614844 - AluSg SINE Alu -17 293 6 191 36 36 0 chr1 53578820 53578848 -228614816 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1838 99 14 48 chr1 53578848 53579142 -228614522 - AluSx SINE Alu -28 284 1 485 167 13 0 chr1 53579175 53579253 -228614411 + Tigger5 DNA MER2_type 1 79 -2244 278 169 65 78 chr1 53579255 53579332 -228614332 - Tigger5 DNA MER2_type -6 2317 2242 * 427 192 0 0 chr1 53579330 53579403 -228614261 + Tigger5 DNA MER2_type 2251 2323 0 1238 72 0 0 chr1 53579865 53580018 -228613646 + AluSq SINE Alu 131 283 -30 2206 84 10 3 chr1 53580020 53580318 -228613346 + AluSq SINE Alu 1 300 -13 2208 94 10 0 chr1 53580318 53580616 -228613048 + AluSp SINE Alu 1 301 -12 3785 119 66 38 chr1 53580717 53581077 -228612587 + LTR51 LTR ERV1 1 389 -282 2144 101 0 3 chr1 53581077 53581375 -228612289 - AluSc SINE Alu -8 301 5 3785 119 66 38 chr1 53581375 53581667 -228611997 + LTR51 LTR ERV1 389 671 0 186 264 94 0 chr1 53581741 53581794 -228611870 - L2 LINE L2 -10 3262 3205 639 133 0 0 chr1 53582677 53582767 -228610897 + AluS SINE Alu 2 91 -222 977 99 7 14 chr1 53582799 53582941 -228610723 + AluSq/x SINE Alu 1 141 -171 249 83 0 0 chr1 53583954 53583990 -228609674 + (CA)n Simple_repeat Simple_repeat 1 36 0 550 218 136 0 chr1 53584293 53584440 -228609224 + MER96 DNA MER1_type? 1 167 -8 668 281 83 16 chr1 53584591 53584783 -228608881 - MIR SINE MIR -1 261 57 333 325 56 77 chr1 53584913 53585304 -228608360 + L2 LINE L2 2258 2640 -674 2075 117 3 0 chr1 53585517 53585817 -228607847 - AluSx SINE Alu -11 301 1 280 219 151 62 chr1 53585942 53586088 -228607576 + MIR SINE MIR 79 237 -25 180 226 194 11 chr1 53587739 53587832 -228605832 - L2 LINE L2 -5 3267 3158 353 344 45 72 chr1 53587987 53588208 -228605456 + L2 LINE L2 3057 3271 -1 287 294 22 0 chr1 53588305 53588397 -228605267 + MIR SINE MIR 168 261 -1 309 329 114 23 chr1 53588423 53588642 -228605022 - L2 LINE L2 -454 2860 2622 301 283 248 16 chr1 53588744 53589183 -228604481 + L2 LINE L2 2401 2941 -373 201 74 0 0 chr1 53589711 53589738 -228603926 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 193 277 141 4 chr1 53590090 53590195 -228603469 + MIR SINE MIR 4 122 -88 302 279 39 29 chr1 53590512 53590616 -228603048 - MIR3 SINE MIR -52 156 52 428 216 103 17 chr1 53590666 53590782 -228602882 - L2 LINE L2 -3 3310 3185 834 217 66 25 chr1 53591361 53591559 -228602105 - MER63A DNA MER1_type -3 207 2 203 314 105 0 chr1 53591741 53591827 -228601837 - MIR SINE MIR -32 230 136 1004 226 147 15 chr1 53591846 53592240 -228601424 + L1ME4a LINE L1 5610 6055 -66 252 260 0 14 chr1 53592262 53592335 -228601329 + L1ME3A LINE L1 6098 6169 -1 2276 98 0 0 chr1 53592382 53592688 -228600976 + AluSg SINE Alu 1 306 -4 21 57 0 0 chr1 53592805 53592840 -228600824 + AT_rich Low_complexity Low_complexity 1 35 0 229 197 79 40 chr1 53592893 53592969 -228600695 - MIR SINE MIR -115 147 69 328 337 113 61 chr1 53593931 53594260 -228599404 + L2 LINE L2 2925 3270 -2 242 210 148 12 chr1 53594296 53594377 -228599287 - MIR3 SINE MIR -13 195 104 2323 84 7 0 chr1 53594437 53594747 -228598917 + AluSp SINE Alu 1 312 -1 510 283 112 0 chr1 53595166 53595318 -228598346 - MIR SINE MIR -7 255 87 381 265 30 30 chr1 53595322 53595454 -228598210 - MIR3 SINE MIR -23 185 54 480 312 152 36 chr1 53596349 53596711 -228596953 + L2 LINE L2 2869 3272 0 230 236 18 0 chr1 53596859 53596914 -228596750 + (TG)n Simple_repeat Simple_repeat 1 56 0 267 348 135 6 chr1 53597332 53597510 -228596154 - MIR SINE MIR -12 250 50 250 295 40 47 chr1 53597709 53597858 -228595806 + L2 LINE L2 3104 3251 -62 1249 220 148 36 chr1 53597862 53598431 -228595233 - L2 LINE L2 -1 3312 2667 1502 137 149 15 chr1 53598438 53598700 -228594964 + AluJo SINE Alu 2 298 -4 199 355 109 45 chr1 53598868 53599088 -228594576 + L3 LINE CR1 1337 1570 -7 269 226 0 0 chr1 53599646 53599699 -228593965 - MIR SINE MIR -57 151 99 293 140 40 0 chr1 53599910 53599960 -228593704 + MLT1L LTR MaLR 1 52 -563 * 758 235 95 107 chr1 53599954 53600146 -228593518 + MLT1L LTR MaLR 168 361 -254 2271 109 3 0 chr1 53600146 53600457 -228593207 + AluSx SINE Alu 1 312 0 758 235 95 107 chr1 53600457 53600532 -228593132 + MLT1L LTR MaLR 361 435 -180 1214 248 102 60 chr1 53600532 53601101 -228592563 - MLT1G1 LTR MaLR 0 595 3 758 235 95 107 chr1 53601101 53601222 -228592442 + MLT1L LTR MaLR 435 554 -61 2318 74 0 0 chr1 53601222 53601519 -228592145 + AluY SINE Alu 1 297 -14 758 235 95 107 chr1 53601519 53601549 -228592115 + MLT1L LTR MaLR 554 583 -32 760 243 62 26 chr1 53601643 53601869 -228591795 + MIR SINE MIR 29 262 0 207 221 116 0 chr1 53601978 53602064 -228591600 + L3 LINE CR1 1434 1529 -48 570 231 9 0 chr1 53602250 53602358 -228591306 - MER81 DNA DNA 0 114 6 232 207 30 152 chr1 53603036 53603153 -228590511 + HAL1 LINE L1 65 158 -2349 1701 138 46 46 chr1 53603153 53603458 -228590206 + AluJb SINE Alu 1 305 -7 232 207 30 152 chr1 53603458 53603504 -228590160 + HAL1 LINE L1 158 208 -2299 1731 243 118 54 chr1 53603818 53604131 -228589533 + HAL1 LINE L1 799 1091 -1416 2263 98 0 0 chr1 53604131 53604428 -228589236 + AluSx SINE Alu 1 297 -15 1731 243 118 54 chr1 53604428 53605169 -228588495 + HAL1 LINE L1 1091 1920 -587 2286 87 0 0 chr1 53605248 53605546 -228588118 + AluSx SINE Alu 1 298 -14 1088 110 0 0 chr1 53605593 53605747 -228587917 + MER41B LTR ERV1 482 635 0 489 124 56 56 chr1 53605747 53605836 -228587828 + MER41B-int LTR ERV1 1 89 -5857 * 1018 124 6 90 chr1 53605833 53606010 -228587654 + MER50-int LTR ERV1 5383 5544 -1661 1205 213 16 20 chr1 53606043 53606292 -228587372 + LTR8 LTR ERV1 338 585 -106 334 141 42 0 chr1 53606296 53606367 -228587297 + GA-rich Low_complexity Low_complexity 2 75 0 2134 119 39 36 chr1 53606702 53606751 -228586913 - L1MB3 LINE L1 0 6183 6136 1989 139 0 0 chr1 53606751 53607045 -228586619 - AluSx SINE Alu -18 294 1 2134 119 39 36 chr1 53607045 53607381 -228586283 - L1MB3 LINE L1 -47 6136 5797 1688 206 104 39 chr1 53607493 53607652 -228586012 - MLT1E2 LTR MaLR -2 624 477 2289 77 0 0 chr1 53607652 53607949 -228585715 + AluSx SINE Alu 1 297 -15 1688 206 104 39 chr1 53607949 53608249 -228585415 - MLT1E2 LTR MaLR -149 477 135 270 200 176 12 chr1 53608276 53608361 -228585303 - MLT1E2 LTR MaLR -555 99 1 2007 197 115 48 chr1 53608391 53608861 -228584803 + MLT1E2 LTR MaLR 53 565 -61 1997 112 7 10 chr1 53608861 53609164 -228584500 - AluSc SINE Alu -5 304 3 2007 197 115 48 chr1 53609164 53609231 -228584433 + MLT1E2 LTR MaLR 565 626 0 217 243 252 0 chr1 53609571 53609674 -228583990 + L3 LINE CR1 1376 1504 -73 1164 113 13 0 chr1 53609755 53609914 -228583750 - AluSg/x SINE Alu -15 297 137 373 263 233 9 chr1 53611841 53612073 -228581591 - L3 LINE CR1 -81 1496 1213 2151 131 3 3 chr1 53612073 53612371 -228581293 - AluSx SINE Alu -14 298 1 2774 118 45 2 chr1 53612645 53613111 -228580553 - L1PA16 LINE L1 -1 6165 5680 2262 69 7 0 chr1 53613284 53613584 -228580080 + AluSc SINE Alu 1 302 0 2072 132 11 0 chr1 53613586 53613890 -228579774 + AluSx SINE Alu 1 307 0 228 185 0 56 chr1 53613892 53613946 -228579718 + MER5B DNA MER1_type 83 133 -45 1344 138 145 60 chr1 53614091 53614373 -228579291 + AluJb SINE Alu 1 306 -6 334 304 0 0 chr1 53614388 53614480 -228579184 + MIR SINE MIR 24 115 -93 471 221 157 29 chr1 53615133 53615337 -228578327 - L2 LINE L2 -1 3312 3083 2215 107 21 0 chr1 53615403 53615693 -228577971 - AluSx SINE Alu -16 296 1 329 317 36 30 chr1 53615714 53615881 -228577783 + MIR SINE MIR 39 206 -56 252 149 0 0 chr1 53616641 53616688 -228576976 + (A)n Simple_repeat Simple_repeat 1 47 0 2312 85 0 3 chr1 53617036 53617339 -228576325 - AluSx SINE Alu 0 302 1 2564 35 0 0 chr1 53618711 53618999 -228574665 + AluY SINE Alu 1 288 -23 501 273 11 96 chr1 53619190 53619377 -228574287 - MER91A DNA MER1_type -20 176 6 212 331 39 17 chr1 53619601 53619782 -228573882 + L2 LINE L2 1320 1504 -1810 280 284 47 61 chr1 53620286 53620434 -228573230 - MIR3 SINE MIR -17 191 46 237 65 0 0 chr1 53620730 53620761 -228572903 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 0 0 0 chr1 53621523 53621546 -228572118 + (TG)n Simple_repeat Simple_repeat 1 23 0 284 215 23 23 chr1 53621564 53621871 -228571793 + (TG)n Simple_repeat Simple_repeat 1 307 0 418 231 30 24 chr1 53621884 53622053 -228571611 + (TG)n Simple_repeat Simple_repeat 2 171 0 241 126 23 35 chr1 53622102 53622189 -228571475 + (TG)n Simple_repeat Simple_repeat 1 86 0 458 216 35 12 chr1 53622205 53622376 -228571288 + (TG)n Simple_repeat Simple_repeat 1 175 0 213 291 163 0 chr1 53622865 53622951 -228570713 + MIR SINE MIR 19 118 -90 235 234 0 0 chr1 53623251 53623298 -228570366 - MER91 DNA MER1_type 0 190 144 187 217 33 65 chr1 53624032 53624124 -228569540 + MIR SINE MIR 29 117 -91 312 276 23 11 chr1 53624413 53624500 -228569164 + L3 LINE CR1 1407 1494 -83 182 401 26 26 chr1 53624859 53625011 -228568653 - MIR3 SINE MIR -32 176 25 282 288 91 45 chr1 53625049 53625181 -228568483 + MIR SINE MIR 55 192 -70 380 263 76 8 chr1 53625577 53625695 -228567969 + MIR SINE MIR 73 198 -64 421 306 84 89 chr1 53625762 53626177 -228567487 - L2 LINE L2 0 3272 2860 348 24 0 0 chr1 53626276 53626317 -228567347 + (ATG)n Simple_repeat Simple_repeat 1 41 0 197 299 23 46 chr1 53628187 53628274 -228565390 + MIR3 SINE MIR 12 96 -112 283 308 27 48 chr1 53628589 53628735 -228564929 - MIR3 SINE MIR -14 194 52 303 292 21 10 chr1 53628991 53629087 -228564577 - MIR SINE MIR 0 262 166 291 270 16 54 chr1 53629705 53629890 -228563774 + (CAACT)n Simple_repeat Simple_repeat 3 180 0 188 298 96 0 chr1 53629892 53629986 -228563678 - L2 LINE L2 -307 2965 2863 229 263 74 42 chr1 53630385 53630480 -228563184 + MIR SINE MIR 39 136 -126 425 268 141 35 chr1 53630669 53630867 -228562797 + MIR SINE MIR 42 260 -2 618 311 35 29 chr1 53632304 53632648 -228561016 - L2 LINE L2 -1164 2150 1805 502 238 214 24 chr1 53632947 53633157 -228560507 + MIR SINE MIR 12 261 -1 243 292 195 0 chr1 53633214 53633327 -228560337 + MIR SINE MIR 48 182 -80 410 309 64 16 chr1 53633362 53633550 -228560114 - MIR SINE MIR -55 207 11 225 250 150 0 chr1 53633943 53634023 -228559641 - L2 LINE L2 -38 3234 3143 780 258 100 0 chr1 53634349 53634539 -228559125 + MIR SINE MIR 2 210 -52 1635 173 33 21 chr1 53634551 53634886 -228558778 + MER44D DNA MER2_type 1 609 0 273 278 19 46 chr1 53634982 53635090 -228558574 + MIR SINE MIR 105 209 -53 269 343 0 0 chr1 53635280 53635353 -228558311 + LTR67 LTR ERVL 152 224 -333 276 267 6 12 chr1 53635522 53635694 -228557970 + CT-rich Low_complexity Low_complexity 1 171 0 384 106 30 15 chr1 53635694 53635760 -228557904 + LTR67 LTR ERVL 491 557 0 320 357 14 28 chr1 53635824 53635967 -228557697 - MIR3 SINE MIR -19 189 49 426 210 10 0 chr1 53636346 53636446 -228557218 + MIR SINE MIR 45 145 -63 312 261 122 82 chr1 53636604 53636907 -228556757 + L3 LINE CR1 1190 1504 -73 371 283 20 10 chr1 53637297 53637396 -228556268 - L2 LINE L2 -6 3307 3208 518 244 69 19 chr1 53637490 53637774 -228555890 - MLT1I LTR MaLR 0 409 82 767 257 24 5 chr1 53637819 53638025 -228555639 - MIR SINE MIR -51 211 2 421 301 30 84 chr1 53639081 53639147 -228554517 - MIR SINE MIR -35 227 159 2413 85 0 19 chr1 53639147 53639463 -228554201 + AluSg SINE Alu 1 310 0 421 301 30 84 chr1 53639463 53639599 -228554065 - MIR SINE MIR -103 159 36 406 211 0 0 chr1 53640331 53640402 -228553262 - L2 LINE L2 -50 3222 3152 212 352 45 0 chr1 53640439 53640527 -228553137 + L2 LINE L2 3217 3308 -5 34 24 0 0 chr1 53640554 53640595 -228553069 + AT_rich Low_complexity Low_complexity 1 41 0 479 282 49 22 chr1 53641185 53641378 -228552286 - MIR SINE MIR -50 212 17 1867 160 3 10 chr1 53641441 53641741 -228551923 - AluJb SINE Alu -14 298 1 300 306 156 20 chr1 53641786 53641985 -228551679 - MIR SINE MIR -16 246 21 357 333 125 7 chr1 53642047 53642191 -228551473 - L2 LINE L2 -8 3264 3104 241 270 79 74 chr1 53642372 53642587 -228551077 + L2 LINE L2 2826 3041 -231 183 316 0 0 chr1 53642599 53642656 -228551008 + L3 LINE CR1 1421 1477 -100 276 289 13 0 chr1 53642665 53642741 -228550923 + MIR SINE MIR 94 170 -92 191 253 80 0 chr1 53642760 53642835 -228550829 - L2 LINE L2 -160 3112 3032 898 264 60 4 chr1 53642866 53643101 -228550563 - MIR SINE MIR -2 260 13 338 129 16 0 chr1 53643489 53643551 -228550113 + CT-rich Low_complexity Low_complexity 4 66 0 351 286 22 11 chr1 53643644 53643735 -228549929 + MIR3 SINE MIR 15 106 -102 717 188 0 0 chr1 53643837 53643981 -228549683 + (TCCA)n Simple_repeat Simple_repeat 4 147 0 191 146 24 0 chr1 53644043 53644084 -228549580 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 225 333 39 0 chr1 53644550 53644628 -228549036 - MIR SINE MIR -86 122 42 203 59 0 29 chr1 53645120 53645154 -228548510 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 544 296 44 15 chr1 53645595 53645801 -228547863 - MIR SINE MIR -41 221 10 431 306 99 31 chr1 53646184 53646406 -228547258 - MIR SINE MIR -1 261 25 391 286 118 65 chr1 53647411 53647750 -228545914 + L2 LINE L2 2916 3272 0 244 200 82 35 chr1 53647916 53648001 -228545663 + MIR SINE MIR 73 161 -101 286 317 106 28 chr1 53648216 53648427 -228545237 + MIR SINE MIR 37 262 0 320 254 127 32 chr1 53648939 53649035 -228544629 + MIR SINE MIR 46 158 -104 1085 254 24 9 chr1 53649035 53649366 -228544298 - MER46C DNA MER2_type -2 336 1 320 254 127 32 chr1 53649366 53649395 -228544269 + MIR SINE MIR 158 183 -79 459 226 34 41 chr1 53649469 53649615 -228544049 + MER5B DNA MER1_type 5 149 -29 4299 182 43 10 chr1 53649632 53650862 -228542802 - L1MB7 LINE L1 0 6184 4919 267 103 0 0 chr1 53650972 53651011 -228542653 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 418 357 67 39 chr1 53651126 53651661 -228542003 - L3 LINE CR1 -103 1474 925 447 299 172 0 chr1 53651753 53651974 -228541690 - MIR SINE MIR -2 260 2 354 267 20 0 chr1 53652652 53652753 -228540911 + (TTCA)n Simple_repeat Simple_repeat 1 103 0 650 293 141 10 chr1 53652753 53653057 -228540607 + L2 LINE L2 2970 3313 0 570 326 100 14 chr1 53653930 53654209 -228539455 + L3 LINE CR1 1255 1557 -20 1006 238 28 77 chr1 53654358 53654678 -228538986 + L1MC5 LINE L1 7120 7415 -546 2753 36 0 0 chr1 53654678 53654983 -228538681 - AluY SINE Alu -6 305 1 1006 238 28 77 chr1 53654983 53655090 -228538574 + L1MC5 LINE L1 7415 7526 -435 2174 99 28 0 chr1 53655197 53655479 -228538185 + AluY SINE Alu 6 295 -16 274 304 113 26 chr1 53655479 53655663 -228538001 + L1ME3A LINE L1 5967 6170 0 324 0 0 0 chr1 53656362 53656398 -228537266 + (TG)n Simple_repeat Simple_repeat 2 37 0 318 301 21 49 chr1 53656497 53656640 -228537024 + MIR3 SINE MIR 64 202 -6 348 207 35 47 chr1 53656980 53657149 -228536515 + (CACCC)n Simple_repeat Simple_repeat 4 170 0 309 200 33 61 chr1 53657064 53657244 -228536420 + C-rich Low_complexity Low_complexity 2 176 0 * 271 251 115 12 chr1 53658077 53658203 -228535461 + MIR SINE MIR 8 150 -58 2367 162 29 0 chr1 53658996 53659409 -228534255 + MSTB LTR MaLR 1 425 -1 327 293 27 11 chr1 53659507 53659626 -228534038 + MIR SINE MIR 37 155 -64 680 211 54 18 chr1 53659654 53659820 -228533844 - MER5A DNA MER1_type 0 189 18 1937 148 110 55 chr1 53659862 53660262 -228533402 - MSTA LTR MaLR -6 422 1 2431 59 10 0 chr1 53660814 53661118 -228532546 + L1PA10 LINE L1 5858 6164 -4 2231 74 3 10 chr1 53661142 53661440 -228532224 + AluY SINE Alu 1 296 -15 238 259 170 0 chr1 53661699 53661811 -228531853 - MIR SINE MIR -13 249 119 229 267 105 0 chr1 53661909 53661995 -228531669 + MIR3 SINE MIR 86 180 -28 507 304 23 58 chr1 53663601 53664082 -228529582 + L1MC4a LINE L1 1942 2405 -3991 1609 282 68 32 chr1 53664121 53665131 -228528533 + L1M4 LINE L1 3756 4802 -1344 6477 108 1 86 chr1 53666199 53667269 -228526395 + L1P LINE L1 1 979 -5167 8664 48 0 3 chr1 53667269 53669150 -228524514 + L1PA5 LINE L1 4305 6186 0 558 288 17 68 chr1 53669294 53669589 -228524075 + HAL1b LINE L1 296 575 -773 242 314 8 25 chr1 53669863 53669984 -228523680 + HAL1b LINE L1 787 905 -443 306 0 0 0 chr1 53670077 53670111 -228523553 + (CA)n Simple_repeat Simple_repeat 1 34 0 1109 215 21 29 chr1 53670473 53670715 -228522949 - MLT1F1 LTR MaLR -2 565 326 315 267 68 87 chr1 53670747 53670908 -228522756 - MLT1F1 LTR MaLR -342 200 43 258 252 26 35 chr1 53670918 53671033 -228522631 + L1MC4a LINE L1 2502 2615 -3600 29 28 0 0 chr1 53671207 53671243 -228522421 + AT_rich Low_complexity Low_complexity 1 36 0 634 146 0 0 chr1 53671251 53671354 -228522310 + L1MA4 LINE L1 6148 6250 -50 311 240 37 106 chr1 53671397 53671467 -228522197 + L1MC4a LINE L1 2854 2927 -3288 1796 156 60 38 chr1 53671467 53671832 -228521832 - THE1C LTR MaLR -2 373 1 8844 198 14 34 chr1 53671832 53673516 -228520148 - MSTA-int LTR MaLR 0 1651 1 1870 133 180 14 chr1 53673516 53673883 -228519781 - MSTA LTR MaLR 0 428 1 311 240 37 106 chr1 53673883 53674027 -228519637 + L1MC4a LINE L1 2924 3055 -3160 1213 293 84 36 chr1 53674208 53675948 -228517716 + L1MC4a LINE L1 4201 5427 -788 767 278 44 65 chr1 53676032 53676176 -228517488 + L1ME3A LINE L1 4722 4868 -1302 3568 123 2 31 chr1 53676176 53676719 -228516945 + MER1A DNA MER1_type 1 527 0 767 278 44 65 chr1 53676719 53677569 -228516095 + L1ME3A LINE L1 4868 5735 -435 1778 90 0 0 chr1 53677569 53677803 -228515861 + AluSc SINE Alu 1 234 -75 767 278 44 65 chr1 53677803 53678014 -228515650 + L1ME3A LINE L1 5735 5891 -279 227 56 56 0 chr1 53678014 53678050 -228515614 + A-rich Low_complexity Low_complexity 2 39 0 767 278 44 65 chr1 53678050 53678116 -228515548 + L1ME3A LINE L1 5891 5957 -213 2561 0 0 0 chr1 53678450 53678765 -228514899 - AluYa5 SINE Alu 0 315 1 359 296 168 0 chr1 53678772 53678951 -228514713 + L1M4 LINE L1 4384 4592 -1554 237 65 0 0 chr1 53679216 53679247 -228514417 + (TG)n Simple_repeat Simple_repeat 1 31 0 195 42 0 0 chr1 53679246 53679270 -228514394 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2109 158 46 44 chr1 53679736 53680191 -228513473 - MER31B LTR ERV1 -10 456 1 451 287 31 77 chr1 53680623 53680818 -228512846 - MIR SINE MIR -71 191 6 597 288 125 50 chr1 53681615 53682038 -228511626 + L2 LINE L2 2804 3258 -14 195 42 0 0 chr1 53682038 53682062 -228511602 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 1078 238 16 12 chr1 53682080 53682324 -228511340 + MIR SINE MIR 18 262 0 239 330 68 0 chr1 53682377 53682465 -228511199 - L2 LINE L2 -12 3301 3208 688 318 41 0 chr1 53682949 53683169 -228510495 - MIR SINE MIR -20 242 14 433 325 83 18 chr1 53683287 53683456 -228510208 - MIR SINE MIR -12 250 71 1550 276 139 18 chr1 53683804 53684573 -228509091 - L2 LINE L2 -313 3000 2141 186 103 0 0 chr1 53685249 53685278 -228508386 + (TG)n Simple_repeat Simple_repeat 2 30 0 583 211 44 0 chr1 53685278 53685392 -228508272 - FLAM_C SINE Alu -14 119 1 201 364 93 0 chr1 53685788 53685906 -228507758 + L2 LINE L2 3138 3266 -6 306 253 25 0 chr1 53686382 53686461 -228507203 + MIR SINE MIR 65 145 -117 347 258 258 39 chr1 53686728 53686883 -228506781 - MIR3 SINE MIR -17 191 3 206 327 0 0 chr1 53687998 53688053 -228505611 - MIR SINE MIR -159 103 49 1018 213 21 21 chr1 53688171 53688406 -228505258 - MIR SINE MIR -23 239 5 952 288 127 36 chr1 53688618 53689146 -228504518 + L2 LINE L2 2385 2960 -354 214 326 171 16 chr1 53689209 53689396 -228504268 + L2 LINE L2 3098 3313 0 2492 120 19 5 chr1 53689626 53689994 -228503670 + THE1C LTR MaLR 3 375 0 310 278 61 35 chr1 53690009 53690124 -228503540 - MIR SINE MIR -114 148 31 533 207 11 77 chr1 53690225 53690413 -228503251 - MER5A DNA MER1_type -1 188 1 267 269 57 90 chr1 53690416 53690628 -228503036 + L2 LINE L2 2770 2974 -340 547 263 29 0 chr1 53690740 53690877 -228502787 - MIR3 SINE MIR -6 202 62 217 333 185 0 chr1 53691158 53691266 -228502398 - MIR SINE MIR -2 260 133 221 300 79 51 chr1 53691303 53691556 -228502108 - L2 LINE L2 -181 3091 2832 215 336 15 7 chr1 53691891 53692028 -228501636 + (TG)n Simple_repeat Simple_repeat 1 138 0 187 250 0 19 chr1 53692484 53692536 -228501128 - L2 LINE L2 -15 3298 3248 334 361 144 35 chr1 53693107 53693481 -228500183 + L2 LINE L2 2446 2860 -454 325 281 159 33 chr1 53693703 53694041 -228499623 - L2 LINE L2 -214 3058 2674 410 245 88 0 chr1 53694539 53694641 -228499023 - L2 LINE L2 -8 3264 3154 567 320 124 11 chr1 53695040 53695402 -228498262 - L2 LINE L2 0 3272 2870 617 273 101 93 chr1 53695403 53695560 -228498104 + MLT1I LTR MaLR 22 176 -233 2151 103 10 6 chr1 53695560 53695871 -228497793 - AluSx SINE Alu 0 312 1 617 273 101 93 chr1 53695871 53696098 -228497566 + MLT1I LTR MaLR 176 409 0 617 339 50 18 chr1 53696122 53696618 -228497046 - L2 LINE L2 -556 2758 2247 383 267 229 24 chr1 53698986 53699327 -228494337 - L2 LINE L2 -15 3257 2847 223 284 62 25 chr1 53699973 53700054 -228493610 + MIR3 SINE MIR 71 154 -54 251 204 102 23 chr1 53700150 53700238 -228493426 + MIR SINE MIR 30 124 -84 732 309 150 11 chr1 53700363 53700810 -228492854 + L2 LINE L2 2804 3312 -1 256 253 53 0 chr1 53700826 53700901 -228492763 - MIR SINE MIR -93 169 91 213 290 112 9 chr1 53701674 53701781 -228491883 + L3 LINE CR1 1306 1423 -154 414 76 0 30 chr1 53702939 53703005 -228490659 - L1MA3 LINE L1 0 6305 6242 268 288 186 8 chr1 53703391 53703509 -228490155 - MIR3 SINE MIR -15 193 55 334 277 95 36 chr1 53703610 53703747 -228489917 + MIR SINE MIR 15 159 -103 292 175 163 38 chr1 53703770 53703850 -228489814 - MER5C DNA MER1_type -6 318 229 364 259 52 26 chr1 53703864 53703980 -228489684 - MER5C DNA MER1_type -200 124 6 252 317 19 29 chr1 53705749 53705853 -228487811 + L3 LINE CR1 1418 1520 -57 456 35 0 0 chr1 53706251 53706309 -228487355 + (TG)n Simple_repeat Simple_repeat 2 59 0 463 310 89 79 chr1 53706589 53706692 -228486972 + L2 LINE L2 2943 3043 -229 1904 114 20 0 chr1 53706692 53706990 -228486674 - AluSc SINE Alu -5 304 1 463 310 89 79 chr1 53706990 53707124 -228486540 + L2 LINE L2 3043 3186 -86 1226 194 78 58 chr1 53707124 53707506 -228486158 - MLT1B LTR MaLR 0 390 1 463 310 89 79 chr1 53707506 53707570 -228486094 + L2 LINE L2 3186 3248 -24 227 300 91 45 chr1 53707817 53707938 -228485726 - MIR SINE MIR -76 132 16 595 289 153 5 chr1 53708450 53708640 -228485024 + MIR SINE MIR 23 240 -22 202 353 128 0 chr1 53709892 53709994 -228483670 - L2 LINE L2 0 3272 3158 670 298 75 13 chr1 53711283 53711511 -228482153 - MIR SINE MIR 0 262 21 428 217 148 9 chr1 53711563 53711678 -228481986 + MIR SINE MIR 95 225 -37 218 354 57 19 chr1 53711855 53712013 -228481651 - L2 LINE L2 -2 3270 3107 319 280 152 0 chr1 53712064 53712189 -228481475 + L2 LINE L2 2920 3063 -209 531 285 86 27 chr1 53712500 53712721 -228480943 + MIR SINE MIR 22 255 -7 200 369 45 45 chr1 53713029 53713205 -228480459 + L2 LINE L2 3128 3303 -10 774 246 153 29 chr1 53713278 53713697 -228479967 + L1ME4a LINE L1 5358 5828 -293 23 0 0 0 chr1 53713762 53713785 -228479879 + AT_rich Low_complexity Low_complexity 1 23 0 302 279 112 19 chr1 53713843 53714004 -228479660 + L1ME4a LINE L1 5571 5746 -375 727 217 0 4 chr1 53714279 53714423 -228479241 + MIR SINE MIR 3 142 -66 1079 225 161 10 chr1 53714608 53715025 -228478639 - LTR33 LTR ERVL -5 516 37 283 278 87 26 chr1 53715036 53715151 -228478513 + MIR SINE MIR 140 261 -1 28 47 0 31 chr1 53715208 53715224 -228478440 + AT_rich Low_complexity Low_complexity 1 16 -46 2471 68 0 3 chr1 53715224 53715517 -228478147 + AluSc SINE Alu 1 292 -17 28 47 0 31 chr1 53715517 53715564 -228478100 + AT_rich Low_complexity Low_complexity 16 62 0 488 264 65 58 chr1 53715575 53715800 -228477864 + L1ME4a LINE L1 5827 6056 -65 1055 144 6 40 chr1 53715800 53715974 -228477690 - FAM SINE Alu -7 168 1 488 264 65 58 chr1 53715974 53716040 -228477624 + L1ME4a LINE L1 6056 6120 -1 526 281 22 7 chr1 53716118 53716257 -228477407 - MIR SINE MIR -109 153 13 332 345 47 5 chr1 53716371 53716562 -228477102 + L2 LINE L2 2892 3090 -182 758 274 79 17 chr1 53716681 53716973 -228476691 + MER102b DNA MER1_type 6 315 -26 846 169 246 26 chr1 53717001 53717273 -228476391 - MLT1H LTR MaLR -1 548 217 253 208 0 0 chr1 53717273 53717321 -228476343 - L2 LINE L2 -268 3045 2998 508 252 65 7 chr1 53717492 53717631 -228476033 - MLT1H LTR MaLR -390 159 13 226 176 0 39 chr1 53717661 53717712 -228475952 + L2 LINE L2 3223 3271 -1 194 317 102 60 chr1 53718275 53718388 -228475276 + MIR3 SINE MIR 30 154 -54 2319 122 0 0 chr1 53718388 53718700 -228474964 - AluSq SINE Alu -1 312 1 194 317 102 60 chr1 53718700 53718753 -228474911 + MIR3 SINE MIR 154 203 -5 288 0 0 0 chr1 53718753 53718785 -228474879 + (CA)n Simple_repeat Simple_repeat 2 33 0 812 222 75 75 chr1 53718864 53719198 -228474466 + L2 LINE L2 2980 3313 0 288 225 42 28 chr1 53719352 53719423 -228474241 - MIR SINE MIR -112 150 79 431 310 64 29 chr1 53719748 53719919 -228473745 + MLT1K LTR MaLR 173 349 -239 453 234 9 18 chr1 53720085 53720196 -228473468 + MLT1K LTR MaLR 470 579 -9 2065 116 58 3 chr1 53720483 53720776 -228472888 - AluSx SINE Alu -3 309 1 1729 162 15 89 chr1 53720884 53721278 -228472386 + MLT1A1 LTR MaLR 1 365 0 716 309 23 39 chr1 53721427 53721686 -228471978 + MIR SINE MIR 8 262 0 293 376 62 10 chr1 53721696 53721890 -228471774 - MIR SINE MIR -11 251 48 490 254 163 12 chr1 53722192 53722389 -228471275 - MIR SINE MIR -15 247 23 248 340 80 0 chr1 53722483 53722583 -228471081 + L2 LINE L2 3175 3282 -31 2476 268 68 30 chr1 53722729 53722927 -228470737 - L1ME3A LINE L1 -2 6237 6048 2127 137 3 0 chr1 53722927 53723234 -228470430 + AluSx SINE Alu 1 308 -4 2476 268 68 30 chr1 53723234 53724852 -228468812 - L1ME3A LINE L1 -191 6048 4351 1120 188 14 116 chr1 53724924 53725269 -228468395 - MLT1A1 LTR MaLR 0 365 56 668 267 8 11 chr1 53725289 53725551 -228468113 - L1ME3A LINE L1 -3984 2412 2152 544 290 94 48 chr1 53725561 53726644 -228467020 - L1MDa LINE L1 -4312 2084 939 1403 113 39 0 chr1 53726644 53726875 -228466789 - L1MA5A LINE L1 -5 6292 6053 544 290 94 48 chr1 53726875 53726941 -228466723 - L1MDa LINE L1 -5457 939 878 3296 193 89 17 chr1 53727625 53728492 -228465172 + MER63C DNA MER1_type 1 929 -1 368 376 32 0 chr1 53728507 53728664 -228465000 - MIR SINE MIR -22 240 79 674 284 200 24 chr1 53729159 53729868 -228463796 + L2 LINE L2 2466 3309 -4 231 303 15 15 chr1 53730640 53730772 -228462892 + (TCTCTG)n Simple_repeat Simple_repeat 6 137 0 292 293 125 105 chr1 53731598 53731704 -228461960 - L2 LINE L2 0 3272 3170 2427 92 3 0 chr1 53731704 53732008 -228461656 + AluSx SINE Alu 1 305 -7 292 293 125 105 chr1 53732008 53732358 -228461306 - L2 LINE L2 -102 3170 2807 572 243 104 0 chr1 53732537 53732681 -228460983 + MIR SINE MIR 49 207 -55 181 318 12 24 chr1 53734114 53734199 -228459465 - L2 LINE L2 -4 3268 3185 1785 161 105 0 chr1 53734213 53734566 -228459098 - MLT1B LTR MaLR 0 390 1 920 178 18 6 chr1 53735097 53735266 -228458398 + MIR SINE MIR 80 250 -12 450 317 86 47 chr1 53735384 53736163 -228457501 + L2 LINE L2 2455 3271 -1 286 344 32 0 chr1 53736169 53736262 -228457402 - MIR SINE MIR -90 172 77 394 301 251 5 chr1 53736282 53736485 -228457179 + L2 LINE L2 2934 3186 -86 292 271 0 0 chr1 53736921 53736980 -228456684 + MIR3 SINE MIR 113 171 -37 435 316 102 6 chr1 53737231 53737408 -228456256 + L3 LINE CR1 897 1090 -487 959 325 44 6 chr1 53737418 53737760 -228455904 + L3 LINE CR1 1218 1572 -5 243 313 69 46 chr1 53737783 53737914 -228455750 - L2 LINE L2 -50 3222 3089 657 170 314 0 chr1 53738013 53738172 -228455492 + MER3 DNA MER1_type 1 209 0 273 125 0 0 chr1 53738179 53738219 -228455445 - MER3 DNA MER1_type -169 40 1 265 254 90 0 chr1 53738338 53738405 -228455259 + MIR SINE MIR 74 146 -62 201 167 28 0 chr1 53738848 53738884 -228454780 + GA-rich Low_complexity Low_complexity 4 40 0 203 152 0 0 chr1 53739467 53739500 -228454164 + (CA)n Simple_repeat Simple_repeat 2 34 0 304 254 0 0 chr1 53739710 53739769 -228453895 + MIR3 SINE MIR 113 171 -37 21 36 0 0 chr1 53743236 53743264 -228450400 + AT_rich Low_complexity Low_complexity 1 28 0 201 361 0 0 chr1 53743547 53743608 -228450056 - MIR3 SINE MIR -4 204 144 288 0 0 0 chr1 53743621 53743653 -228450011 + (CA)n Simple_repeat Simple_repeat 1 32 0 5613 53 0 50 chr1 53744809 53745564 -228448100 - L1PA7 LINE L1 0 6154 5438 2354 100 10 0 chr1 53745572 53745873 -228447791 - AluSp SINE Alu -9 304 1 276 301 24 0 chr1 53746048 53746131 -228447533 + MIR3 SINE MIR 81 165 -43 299 211 21 63 chr1 53746475 53746570 -228447094 + MIR3 SINE MIR 97 187 -21 211 259 0 0 chr1 53747748 53747802 -228445862 - L3b LINE CR1 -188 1395 1342 292 304 57 25 chr1 53748390 53748548 -228445116 + MIR SINE MIR 89 251 -11 181 133 200 0 chr1 53748643 53748688 -228444976 + MIR SINE MIR 176 229 -33 352 298 132 5 chr1 53749214 53749419 -228444245 + L3 LINE CR1 1305 1535 -42 * 500 287 77 26 chr1 53749416 53749611 -228444053 + MIR SINE MIR 19 223 -39 998 204 73 9 chr1 53749736 53749956 -228443708 - MIR SINE MIR -5 257 24 860 147 157 26 chr1 53750074 53750265 -228443399 - MER58A DNA MER1_type -8 216 1 239 308 55 34 chr1 53750956 53751102 -228442562 + MIR3 SINE MIR 8 156 -52 287 292 71 52 chr1 53751926 53752080 -228441584 - MIR3 SINE MIR -27 181 25 381 186 0 35 chr1 53752292 53752378 -228441286 + MIR SINE MIR 71 153 -109 331 261 70 35 chr1 53753565 53753680 -228439984 - L2 LINE L2 -15 3298 3180 235 314 25 8 chr1 53753751 53753872 -228439792 + (TGAA)n Simple_repeat Simple_repeat 3 125 0 1242 100 12 0 chr1 53754138 53754298 -228439366 - AluSg/x SINE Alu -15 297 136 2364 81 3 50 chr1 53754300 53754620 -228439044 - AluSx SINE Alu -7 305 1 1351 270 49 55 chr1 53754743 53755298 -228438366 + L2 LINE L2 2772 3313 0 420 335 54 30 chr1 53756094 53756297 -228437367 - MIR SINE MIR -9 253 46 532 320 72 22 chr1 53757913 53758094 -228435570 + MIR SINE MIR 22 211 -51 1904 171 37 40 chr1 53758245 53758620 -228435044 - MLT1A2 LTR MaLR 0 374 1 241 270 81 45 chr1 53759979 53760090 -228433574 - MER5B DNA MER1_type -22 156 42 28 0 0 0 chr1 53760112 53760140 -228433524 + AT_rich Low_complexity Low_complexity 1 28 0 1701 205 0 10 chr1 53760203 53760510 -228433154 - AluJb SINE Alu -8 304 1 287 304 33 0 chr1 53760695 53760787 -228432877 - MIR3 SINE MIR -42 166 72 226 167 0 0 chr1 53760812 53760848 -228432816 + MIR SINE MIR 226 261 -1 234 232 61 20 chr1 53761923 53762022 -228431642 + (CAGAGA)n Simple_repeat Simple_repeat 3 105 0 225 257 154 11 chr1 53764003 53764139 -228429525 - MIR3 SINE MIR -82 126 2 282 264 179 57 chr1 53764535 53764675 -228428989 - MIR SINE MIR -71 191 35 377 307 92 7 chr1 53764725 53764878 -228428786 + MIR SINE MIR 18 183 -79 616 196 98 7 chr1 53765355 53765498 -228428166 - MER5A DNA MER1_type 0 189 34 636 233 148 31 chr1 53766461 53766693 -228426971 - MIR SINE MIR 0 262 6 261 180 0 0 chr1 53766711 53766761 -228426903 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 330 296 201 37 chr1 53766768 53766957 -228426707 - MIR SINE MIR -6 256 37 584 225 35 47 chr1 53767369 53767538 -228426126 + MIR SINE MIR 26 192 -70 243 0 0 0 chr1 53767907 53767934 -228425730 + (TG)n Simple_repeat Simple_repeat 2 28 0 430 248 32 51 chr1 53767997 53768154 -228425510 - L2 LINE L2 -7 3306 3153 301 263 136 25 chr1 53768148 53768266 -228425398 + MIR SINE MIR 54 184 -78 * 314 355 12 6 chr1 53768847 53769019 -228424645 + (CAACC)n Simple_repeat Simple_repeat 3 175 0 280 265 59 0 chr1 53769271 53769373 -228424291 - L1MC5 LINE L1 -46 7915 7808 325 291 48 6 chr1 53769555 53769720 -228423944 + LTR67 LTR ERVL 373 544 -13 265 359 6 12 chr1 53769769 53769936 -228423728 + (CAACC)n Simple_repeat Simple_repeat 2 167 0 220 291 0 13 chr1 53769990 53770069 -228423595 + (CAACC)n Simple_repeat Simple_repeat 5 82 0 2288 228 52 15 chr1 53770427 53771019 -228422645 + MLT1E2 LTR MaLR 11 624 -2 567 286 121 18 chr1 53771095 53771319 -228422345 + MIR SINE MIR 6 252 -10 180 147 88 0 chr1 53771289 53771323 -228422341 + L2 LINE L2 3224 3260 -12 * 576 259 79 5 chr1 53772053 53772242 -228421422 - MER63A DNA MER1_type -2 208 6 749 270 31 18 chr1 53772590 53772812 -228420852 + MIR SINE MIR 29 253 -9 242 309 29 0 chr1 53772827 53772895 -228420769 + L2 LINE L2 3190 3259 -13 310 240 40 0 chr1 53773069 53773144 -228420520 - L2 LINE L2 -6 3266 3189 200 269 54 94 chr1 53773281 53773430 -228420234 + MIR SINE MIR 31 173 -89 283 204 58 18 chr1 53773531 53773629 -228420035 - MIR SINE MIR -61 147 49 367 301 147 19 chr1 53774173 53774329 -228419335 - L2 LINE L2 -1 3271 3096 381 282 153 0 chr1 53774349 53774512 -228419152 - MIR SINE MIR -12 250 63 263 306 99 8 chr1 53774587 53774708 -228418956 - L2 LINE L2 -222 3050 2919 698 313 128 60 chr1 53774748 53775856 -228417808 + L2 LINE L2 2059 3248 -24 276 295 137 0 chr1 53776012 53776107 -228417557 + MIR3 SINE MIR 58 165 -43 312 220 30 60 chr1 53776513 53776613 -228417051 - MIR SINE MIR -59 149 53 262 244 104 26 chr1 53776697 53776812 -228416852 + MIR3 SINE MIR 13 136 -72 433 287 8 0 chr1 53777543 53777665 -228415999 + MIR3 SINE MIR 47 169 -39 363 264 0 11 chr1 53777822 53777913 -228415751 + MIR SINE MIR 51 140 -122 252 0 0 0 chr1 53777913 53777941 -228415723 + (A)n Simple_repeat Simple_repeat 1 28 0 226 328 70 16 chr1 53778297 53778425 -228415239 - MIR3 SINE MIR -54 154 20 22 0 0 0 chr1 53778958 53778980 -228414684 + GC_rich Low_complexity Low_complexity 1 22 0 295 293 140 24 chr1 53779199 53779363 -228414301 + MIR SINE MIR 46 228 -34 612 333 43 16 chr1 53780236 53780491 -228413173 - MIR SINE MIR 0 262 1 586 323 138 5 chr1 53781264 53781481 -228412183 - MIR SINE MIR -15 247 2 1249 266 57 52 chr1 53781884 53782324 -228411340 + MER65A-int LTR ERV1 4430 4871 0 2221 144 47 7 chr1 53782324 53782491 -228411173 + MER65A LTR ERV1 1 160 -285 351 0 0 0 chr1 53782491 53782530 -228411134 + (CA)n Simple_repeat Simple_repeat 2 40 0 2221 144 47 7 chr1 53782530 53782765 -228410899 + MER65A LTR ERV1 160 419 -26 2054 152 36 30 chr1 53782765 53783127 -228410537 + THE1B LTR MaLR 1 364 0 1156 276 116 16 chr1 53783146 53783585 -228410079 + MLT1H1 LTR MaLR 73 555 0 35 83 0 0 chr1 53783633 53783717 -228409947 + AT_rich Low_complexity Low_complexity 1 84 0 2604 58 0 3 chr1 53783881 53784190 -228409474 - AluY SINE Alu -3 308 1 317 294 28 96 chr1 53785144 53785467 -228408197 - L1MC4 LINE L1 -981 7061 6761 270 73 0 0 chr1 53786421 53786462 -228407202 + (CA)n Simple_repeat Simple_repeat 2 42 0 29 60 0 0 chr1 53786711 53786761 -228406903 + AT_rich Low_complexity Low_complexity 1 50 0 1194 112 0 6 chr1 53786969 53787156 -228406508 + AluSg/x SINE Alu 125 310 0 1448 273 69 28 chr1 53787156 53787766 -228405898 - L1MC4 LINE L1 -594 5560 5296 1960 129 0 52 chr1 53787985 53788294 -228405370 - AluSx SINE Alu -19 293 1 625 332 93 23 chr1 53788410 53789150 -228404514 - L1MC4 LINE L1 -1043 5103 4312 545 283 39 14 chr1 53789910 53790196 -228403468 - L1MC4 LINE L1 -2191 3955 3663 489 263 44 0 chr1 53790318 53790432 -228403232 - MIR SINE MIR -74 188 70 475 319 0 0 chr1 53790576 53790711 -228402953 + MIR SINE MIR 58 192 -70 365 301 13 13 chr1 53791229 53791382 -228402282 - L1MA9 LINE L1 -202 6110 5958 319 352 53 11 chr1 53791588 53791852 -228401812 - L1ME4a LINE L1 -178 5943 5669 288 0 0 0 chr1 53792508 53792540 -228401124 + (CA)n Simple_repeat Simple_repeat 2 33 0 207 350 90 34 chr1 53792640 53792874 -228400790 - L2 LINE L2 0 3272 3026 357 258 296 23 chr1 53793349 53793609 -228400055 - L2 LINE L2 -985 2329 1999 8317 170 7 9 chr1 53793609 53795878 -228397786 + L1PA14 LINE L1 3888 6159 -2 487 249 108 16 chr1 53796072 53796257 -228397407 - L2 LINE L2 -1340 1974 1773 301 279 13 0 chr1 53796272 53796351 -228397313 + LTR67 LTR ERVL 2 81 -476 647 201 7 0 chr1 53796626 53796780 -228396884 + (TGG)n Simple_repeat Simple_repeat 2 156 0 903 161 0 0 chr1 53796798 53796978 -228396686 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1005 175 0 11 chr1 53796992 53797633 -228396031 + (TGG)n Simple_repeat Simple_repeat 1 633 0 279 0 0 0 chr1 53797712 53797743 -228395921 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1524 231 35 54 chr1 53797750 53798234 -228395430 - L1ME1 LINE L1 -32 6134 5660 418 173 0 12 chr1 53798234 53798315 -228395349 + LTR67 LTR ERVL 473 552 -5 901 347 69 10 chr1 53798321 53798917 -228394747 - L2 LINE L2 -1549 1765 1135 207 300 12 25 chr1 53798960 53799040 -228394624 + L2 LINE L2 3235 3313 0 391 319 18 31 chr1 53799058 53799221 -228394443 - MIR3 SINE MIR -29 179 19 258 306 0 0 chr1 53799241 53799303 -228394361 + MIR SINE MIR 46 107 -155 895 56 71 24 chr1 53799355 53799481 -228394183 - L1PA8 LINE L1 -7 6165 6034 191 238 0 0 chr1 53799485 53799527 -228394137 - MIR SINE MIR -120 142 101 235 232 37 61 chr1 53799979 53800061 -228393603 + MLT1H LTR MaLR 454 533 -16 320 266 83 46 chr1 53800068 53800177 -228393487 - L2 LINE L2 -16 3256 3144 279 254 136 18 chr1 53800692 53800802 -228392862 + MIR SINE MIR 108 230 -32 225 204 23 0 chr1 53800881 53800925 -228392739 + MIR SINE MIR 96 140 -68 198 379 32 11 chr1 53800951 53801046 -228392618 + L2 LINE L2 3146 3242 -30 561 55 22 11 chr1 53801373 53801464 -228392200 + (TCTA)n Simple_repeat Simple_repeat 3 94 0 1732 178 0 7 chr1 53801472 53801753 -228391911 - AluJb SINE Alu -33 279 1 1830 277 112 23 chr1 53801826 53802898 -228390766 - L2 LINE L2 -3 3310 2133 22 0 0 0 chr1 53802898 53802920 -228390744 + AT_rich Low_complexity Low_complexity 1 22 0 289 317 109 33 chr1 53803137 53803320 -228390344 + MIR SINE MIR 14 210 -52 440 269 144 24 chr1 53804747 53804914 -228388750 + MIR SINE MIR 76 262 0 710 273 16 27 chr1 53805057 53805244 -228388420 - MIR SINE MIR -65 197 13 226 338 54 20 chr1 53805759 53805907 -228387757 - L2 LINE L2 -214 3058 2906 451 346 6 6 chr1 53807103 53807259 -228386405 - MIR3 SINE MIR -2 206 51 433 342 37 0 chr1 53807410 53807571 -228386093 - MIR SINE MIR -50 212 46 2428 253 48 24 chr1 53807744 53808508 -228385156 - MER20B DNA MER1_type 0 784 2 234 254 142 47 chr1 53809387 53809556 -228384108 + MIR3 SINE MIR 8 192 -16 259 260 73 31 chr1 53810014 53810110 -228383554 - MIR SINE MIR -77 185 86 237 324 9 9 chr1 53810371 53810476 -228383188 - MIR SINE MIR -50 212 108 317 331 8 0 chr1 53810862 53810995 -228382669 + CT-rich Low_complexity Low_complexity 2 135 0 439 246 43 71 chr1 53812139 53812308 -228381356 - MIR3 SINE MIR -27 181 23 651 274 128 5 chr1 53812918 53813147 -228380517 + MIR SINE MIR 4 256 -6 208 338 155 39 chr1 53813675 53814255 -228379409 - L2 LINE L2 -184 3088 2447 337 231 39 0 chr1 53815140 53815218 -228378446 - MIR SINE MIR -62 146 66 456 399 26 9 chr1 53815616 53815844 -228377820 - L3 LINE CR1 -1 1576 1345 205 113 0 57 chr1 53815844 53815897 -228377767 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 420 350 182 3 chr1 53815899 53816185 -228377479 - L2 LINE L2 -1 3271 2935 243 254 15 30 chr1 53816914 53816981 -228376683 + MIR SINE MIR 70 135 -73 455 227 24 78 chr1 53818738 53818940 -228374724 + MIR SINE MIR 17 212 -50 305 278 56 9 chr1 53819126 53819234 -228374430 + MIR3 SINE MIR 44 156 -52 415 294 81 20 chr1 53820567 53820719 -228372945 - MIR SINE MIR -1 261 96 540 291 79 11 chr1 53821451 53821640 -228372024 - MIR SINE MIR -16 246 45 312 261 11 22 chr1 53822658 53822750 -228370914 + MIR SINE MIR 172 262 0 202 264 23 58 chr1 53822791 53822878 -228370786 - MIR SINE MIR 0 262 179 180 77 0 0 chr1 53823175 53823201 -228370463 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 315 314 64 14 chr1 53823787 53823927 -228369737 + MIR3 SINE MIR 36 182 -26 271 216 194 29 chr1 53824515 53824654 -228369010 - MIR3 SINE MIR -5 203 42 278 231 64 0 chr1 53826152 53826230 -228367434 + MIR SINE MIR 62 144 -118 2456 93 30 35 chr1 53827411 53827777 -228365887 + THE1B LTR MaLR 1 364 0 378 304 12 8 chr1 53828076 53828222 -228365442 - MER5A DNA MER1_type 0 178 29 262 319 83 25 chr1 53828682 53828839 -228364825 - L3 LINE CR1 -9 1568 1403 799 286 103 6 chr1 53829640 53829951 -228363713 - L2 LINE L2 0 3313 2973 607 272 52 21 chr1 53829958 53830170 -228363494 + MIR SINE MIR 46 260 -2 639 281 95 4 chr1 53830247 53830478 -228363186 + MIR SINE MIR 3 254 -8 719 236 61 11 chr1 53831460 53831686 -228361978 + MIR SINE MIR 23 258 -4 188 286 102 0 chr1 53831807 53831905 -228361759 - L2 LINE L2 -21 3251 3144 686 192 254 5 chr1 53832689 53832882 -228360782 + MIR SINE MIR 2 242 -20 262 301 12 12 chr1 53833396 53833479 -228360185 - L2 LINE L2 0 3272 3190 234 254 93 51 chr1 53834197 53834315 -228359349 + MIR SINE MIR 20 142 -66 297 311 94 67 chr1 53834432 53834792 -228358872 - L2 LINE L2 -18 3254 2885 224 403 0 18 chr1 53834856 53835013 -228358651 + MIR SINE MIR 41 192 -63 201 246 232 0 chr1 53835740 53835809 -228357855 + MER91C DNA MER1_type 36 120 -20 309 323 267 10 chr1 53835904 53836406 -228357258 + L2 LINE L2 2022 2652 -662 354 288 63 0 chr1 53836453 53836564 -228357100 + L2 LINE L2 3155 3272 0 222 96 39 19 chr1 53837080 53837132 -228356532 + GA-rich Low_complexity Low_complexity 2 54 0 436 301 17 0 chr1 53837201 53837374 -228356290 + GA-rich Low_complexity Low_complexity 1 176 0 329 365 29 15 chr1 53837676 53837813 -228355851 - MER91A DNA MER1_type -13 183 45 236 352 104 33 chr1 53837849 53838031 -228355633 + MIR3 SINE MIR 11 205 -3 536 236 72 16 chr1 53838075 53838262 -228355402 - MIR SINE MIR -54 208 5 242 333 167 6 chr1 53839235 53839391 -228354273 + L3 LINE CR1 1345 1525 -52 238 239 15 15 chr1 53839574 53839641 -228354023 - MIR SINE MIR -151 111 45 330 280 32 40 chr1 53840148 53840273 -228353391 - MIR SINE MIR -123 139 16 1535 177 32 29 chr1 53840702 53841013 -228352651 - AluJo SINE Alu 0 312 1 194 158 0 0 chr1 53841227 53841265 -228352399 + L2 LINE L2 3027 3064 -208 198 396 0 21 chr1 53841306 53841402 -228352262 - MIR3 SINE MIR -6 202 109 270 0 0 0 chr1 53841781 53841811 -228351853 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 185 345 67 50 chr1 53841970 53842089 -228351575 + L3 LINE CR1 1457 1577 0 210 204 0 93 chr1 53842800 53842854 -228350810 - L3 LINE CR1 -5 1572 1524 180 333 0 0 chr1 53843248 53843302 -228350362 + L2 LINE L2 1147 1200 -2114 400 298 28 28 chr1 53843351 53843532 -228350132 - MER117 DNA MER1_type -6 191 11 480 315 59 51 chr1 53843571 53843962 -228349702 + L2 LINE L2 1315 1708 -1606 330 263 159 6 chr1 53844654 53844828 -228348836 + MIR SINE MIR 33 241 -21 536 301 37 1 chr1 53844893 53845063 -228348601 - MIR SINE MIR -67 141 6 244 387 42 0 chr1 53845897 53846039 -228347625 + MIR3 SINE MIR 46 193 -15 195 139 0 0 chr1 53846270 53846306 -228347358 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 292 341 30 15 chr1 53847197 53847329 -228346335 - MIR3 SINE MIR -52 156 23 236 208 0 0 chr1 53847660 53847708 -228345956 + MLT1I LTR MaLR 309 356 -53 206 271 0 17 chr1 53847790 53847849 -228345815 + GA-rich Low_complexity Low_complexity 4 61 0 195 256 152 114 chr1 53848003 53848214 -228345450 - MIR SINE MIR -15 247 29 219 333 114 0 chr1 53848427 53848532 -228345132 + MIR SINE MIR 37 153 -55 1535 158 93 7 chr1 53848801 53849079 -228344585 - AluJo SINE Alu 0 302 1 201 250 202 0 chr1 53849154 53849258 -228344406 - MIR SINE MIR -14 248 124 253 375 10 0 chr1 53849362 53849466 -228344198 + L2 LINE L2 3145 3249 -23 335 307 0 0 chr1 53849555 53849630 -228344034 + MIR SINE MIR 80 154 -108 298 310 0 0 chr1 53850681 53850752 -228342912 - MER91B DNA MER1_type -119 71 1 596 257 66 82 chr1 53851056 53851313 -228342351 + MIR SINE MIR 8 260 -2 300 353 24 48 chr1 53852023 53852230 -228341434 - L2 LINE L2 -3 3269 3068 226 254 119 51 chr1 53853529 53853647 -228340017 - L2 LINE L2 -3 3269 3144 246 32 0 0 chr1 53854013 53854044 -228339620 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1307 277 49 37 chr1 53854044 53854640 -228339024 - L2 LINE L2 0 3313 2707 446 303 0 0 chr1 53855291 53855413 -228338251 + MIR SINE MIR 65 186 -76 203 114 57 0 chr1 53856385 53856420 -228337244 - MIR SINE MIR -56 152 116 186 43 0 0 chr1 53856420 53856443 -228337221 + (GGGAA)n Simple_repeat Simple_repeat 5 27 0 334 344 89 32 chr1 53856703 53857196 -228336468 + L2 LINE L2 2570 3086 -186 522 229 254 31 chr1 53857215 53857569 -228336095 + MLT1H LTR MaLR 2 434 -115 325 314 59 8 chr1 53857669 53857787 -228335877 + L2 LINE L2 3148 3271 -42 243 289 13 0 chr1 53858657 53858733 -228334931 + MIR SINE MIR 181 257 -5 195 186 93 0 chr1 53858765 53858808 -228334856 - L3 LINE CR1 -7 1570 1524 406 269 40 48 chr1 53859044 53859201 -228334463 - MIR3 SINE MIR -46 162 14 228 264 38 65 chr1 53859328 53859459 -228334205 - MIR SINE MIR -69 139 35 682 248 90 26 chr1 53859718 53859952 -228333712 - MIR SINE MIR -9 253 5 312 339 54 0 chr1 53859992 53860122 -228333542 - MIR SINE MIR -111 151 15 433 239 7 97 chr1 53860993 53861148 -228332516 - L2 LINE L2 -31 3282 3142 4226 148 47 1 chr1 53861149 53861633 -228332031 + ERVL-D LTR ERVL 4933 5468 -296 210 37 0 0 chr1 53861633 53861660 -228332004 + (TG)n Simple_repeat Simple_repeat 2 28 0 4226 148 47 1 chr1 53861660 53861964 -228331700 + ERVL-D LTR ERVL 5468 5757 -7 1189 143 27 9 chr1 53861964 53862187 -228331477 + MLT2D LTR ERVL 1 227 -187 829 226 23 36 chr1 54062191 54062412 -228131252 + MLT1A2 LTR MaLR 141 358 -16 289 277 60 0 chr1 54062752 54062835 -228130829 + L2 LINE L2 3226 3313 0 279 315 89 76 chr1 54063852 54064154 -228129510 + L2 LINE L2 2965 3270 -2 1397 122 99 23 chr1 54064353 54064616 -228129048 + MER44D DNA MER2_type 10 562 -47 1934 161 0 3 chr1 54064650 54065014 -228128650 - AluJo SINE Alu 0 363 1 259 314 82 25 chr1 54065019 54065178 -228128486 - MIR SINE MIR -78 184 17 365 318 123 18 chr1 54066319 54066489 -228127175 - MIR SINE MIR -41 221 34 199 356 50 10 chr1 54066495 54066596 -228127068 - L2 LINE L2 -25 3247 3143 202 255 21 0 chr1 54067018 54067065 -228126599 + MIR SINE MIR 99 146 -62 1201 262 49 31 chr1 54067068 54067457 -228126207 + MSTD LTR MaLR 1 396 0 275 271 153 0 chr1 54067462 54067547 -228126117 - MIR3 SINE MIR -3 205 108 813 153 9 135 chr1 54067640 54067869 -228125795 + MER20 DNA MER1_type 1 200 -19 7237 188 43 38 chr1 54067871 54069828 -228123836 + L1MC1 LINE L1 3268 5246 -1087 198 0 0 0 chr1 54069828 54069850 -228123814 + (TA)n Simple_repeat Simple_repeat 1 22 0 7237 188 43 38 chr1 54069850 54070931 -228122733 + L1MC1 LINE L1 5246 6320 -13 192 40 0 0 chr1 54071531 54071556 -228122108 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 248 262 71 12 chr1 54072165 54072249 -228121415 + MIR3 SINE MIR 106 194 -14 379 281 184 10 chr1 54072379 54072575 -228121089 + MIR SINE MIR 32 261 -1 191 283 0 0 chr1 54073934 54073980 -228119684 + MIR SINE MIR 169 214 -48 263 384 89 0 chr1 54074723 54074835 -228118829 + L2 LINE L2 3150 3271 -1 186 191 0 0 chr1 54074837 54074884 -228118780 + GA-rich Low_complexity Low_complexity 3 49 0 2220 129 3 40 chr1 54074925 54075273 -228118391 + MER1B DNA MER1_type 3 337 0 442 311 63 63 chr1 54076829 54077163 -228116501 - L2 LINE L2 -15 3257 2924 762 138 156 12 chr1 54077262 54077429 -228116235 - MIR SINE MIR -7 255 65 357 295 72 14 chr1 54077880 54078019 -228115645 - MIR3 SINE MIR -55 153 7 208 250 0 0 chr1 54078628 54078676 -228114988 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1802 156 18 87 chr1 54079111 54079503 -228114161 - MLT1A1 LTR MaLR 0 365 1 38 22 0 0 chr1 54080458 54080503 -228113161 + AT_rich Low_complexity Low_complexity 1 45 0 291 263 183 10 chr1 54080952 54081101 -228112563 + MIR3 SINE MIR 7 183 -67 373 289 247 18 chr1 54081171 54081552 -228112112 - L3 LINE CR1 -13 1564 1097 246 105 0 0 chr1 54081838 54081876 -228111788 + (CA)n Simple_repeat Simple_repeat 2 39 0 512 268 71 40 chr1 54082138 54082337 -228111327 + MIR SINE MIR 1 212 -50 347 132 242 33 chr1 54082333 54082424 -228111240 - MIR SINE MIR -54 208 99 * 234 241 35 0 chr1 54083146 54083204 -228110460 - L3 LINE CR1 -89 1488 1429 183 269 0 75 chr1 54083432 54083499 -228110165 - MIR3 SINE MIR -33 175 114 285 307 71 16 chr1 54083761 54083888 -228109776 + MIR SINE MIR 94 227 -35 364 311 141 24 chr1 54084083 54084289 -228109375 - MIR SINE MIR -12 250 21 287 216 23 23 chr1 54084709 54084797 -228108867 - MIR SINE MIR -66 142 55 564 239 9 14 chr1 54085404 54085547 -228108117 + MIR3 SINE MIR 11 154 -54 226 289 144 22 chr1 54085556 54085646 -228108018 + L2 LINE L2 3169 3269 -3 24 32 0 0 chr1 54085878 54085909 -228107755 + AT_rich Low_complexity Low_complexity 1 31 0 36 62 0 0 chr1 54085977 54086041 -228107623 + AT_rich Low_complexity Low_complexity 1 64 0 2132 137 3 0 chr1 54086158 54086451 -228107213 - AluJo SINE Alu -18 294 1 187 269 179 0 chr1 54086923 54087001 -228106663 + MIR SINE MIR 24 115 -147 218 252 65 65 chr1 54087609 54087732 -228105932 + MIR SINE MIR 118 240 -22 397 305 120 38 chr1 54089450 54089867 -228103797 + L2 LINE L2 2821 3271 -1 294 211 167 44 chr1 54090000 54090114 -228103550 + MIR SINE MIR 20 147 -61 279 221 0 59 chr1 54091458 54091526 -228102138 - L2 LINE L2 0 3313 3250 2219 99 3 3 chr1 54091726 54092019 -228101645 + AluY SINE Alu 1 293 -18 222 333 0 0 chr1 54092051 54092123 -228101541 + MIR SINE MIR 86 157 -105 192 213 43 0 chr1 54092148 54092195 -228101469 + L2 LINE L2 3222 3270 -2 327 293 47 123 chr1 54092342 54092595 -228101069 - L2 LINE L2 -13 3259 3026 5871 186 43 33 chr1 54093456 54094238 -228099426 + L1M4 LINE L1 5 807 -5735 327 49 0 0 chr1 54094238 54094279 -228099385 + (CA)n Simple_repeat Simple_repeat 2 42 0 5871 186 43 33 chr1 54094279 54094817 -228098847 + L1M4 LINE L1 807 1338 -5204 2815 3 0 23 chr1 54094933 54095243 -228098421 - AluYb8 SINE Alu -15 303 1 1300 203 19 61 chr1 54095243 54095554 -228098110 - AluJo SINE Alu -14 298 1 190 306 0 0 chr1 54095558 54095607 -228098057 - MIR SINE MIR -61 147 99 1987 154 40 0 chr1 54096076 54096401 -228097263 + AluJo SINE Alu 1 337 0 246 301 53 18 chr1 54096835 54096948 -228096716 + MIR SINE MIR 86 202 -60 233 323 0 0 chr1 54097456 54097521 -228096143 - L2 LINE L2 -1 3271 3207 784 273 79 94 chr1 54097548 54098028 -228095636 - L2 LINE L2 -2 3311 2839 376 308 71 24 chr1 54098187 54098440 -228095224 + L1ME4a LINE L1 5550 5814 -307 427 162 54 0 chr1 54098440 54098514 -228095150 + AluSq/x SINE Alu 55 132 -181 1849 110 0 4 chr1 54098614 54098859 -228094805 + AluSx SINE Alu 33 276 -36 397 332 55 14 chr1 54098922 54099139 -228094525 + L1ME3 LINE L1 5733 5958 -204 1612 216 0 26 chr1 54099364 54099669 -228093995 + AluJb SINE Alu 1 297 -15 369 264 236 33 chr1 54099736 54099789 -228093875 + L1ME4a LINE L1 5903 5944 -177 1759 144 49 55 chr1 54099789 54100137 -228093527 + MER7A DNA MER2_type 2 345 -1 369 264 236 33 chr1 54100137 54100265 -228093399 + L1ME4a LINE L1 5944 6121 0 1872 145 3 49 chr1 54100577 54100902 -228092762 + AluSx SINE Alu 1 310 -2 328 155 59 14 chr1 54100998 54101080 -228092584 + MLT1E LTR MaLR 507 653 -1 800 268 12 33 chr1 54101940 54102183 -228091481 - MIR SINE MIR 0 262 25 600 307 37 29 chr1 54103594 54103838 -228089826 - MIR SINE MIR 0 262 17 700 249 14 24 chr1 54104659 54104868 -228088796 + MLT1I LTR MaLR 2 208 -201 774 264 32 14 chr1 54105708 54105928 -228087736 - MIR SINE MIR -24 238 15 266 330 26 9 chr1 54106402 54106517 -228087147 + MIR3 SINE MIR 67 183 -25 194 368 35 0 chr1 54106600 54106714 -228086950 - MIR3 SINE MIR -9 199 82 247 305 23 61 chr1 54108008 54108139 -228085525 - L2 LINE L2 -1 3271 3146 2086 127 40 7 chr1 54108300 54108599 -228085065 - AluSg1 SINE Alu 0 309 1 237 202 226 12 chr1 54109119 54109203 -228084461 + MIR SINE MIR 38 139 -69 1203 255 246 21 chr1 54109269 54110319 -228083345 - L2 LINE L2 -68 3245 1957 923 259 26 0 chr1 54111939 54112171 -228081493 - MIR SINE MIR -15 247 10 413 295 98 0 chr1 54112391 54112503 -228081161 + L2 LINE L2 3145 3267 -5 246 318 99 13 chr1 54112994 54113167 -228080497 + MIR SINE MIR 36 218 -44 360 64 0 0 chr1 54113421 54113468 -228080196 + (CA)n Simple_repeat Simple_repeat 2 48 0 180 302 0 0 chr1 54113951 54113994 -228079670 + L2 LINE L2 3190 3232 -40 305 305 16 23 chr1 54114077 54114205 -228079459 - MIR SINE MIR -59 149 23 1925 175 8 48 chr1 54115673 54116072 -228077592 + MLT1B LTR MaLR 8 390 0 358 360 101 0 chr1 54116843 54117021 -228076643 + L3 LINE CR1 1367 1562 -15 2314 128 12 6 chr1 54117353 54117688 -228075976 - MER1B DNA MER1_type 0 337 1 195 129 0 0 chr1 54118045 54118076 -228075588 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 191 319 72 0 chr1 54118218 54118287 -228075377 + MIR SINE MIR 120 193 -69 590 329 70 0 chr1 54118315 54118528 -228075136 - MIR SINE MIR -25 237 10 290 187 119 127 chr1 54119227 54119361 -228074303 - MIR SINE MIR -44 218 86 507 296 57 57 chr1 54120204 54120609 -228073055 + L2 LINE L2 2454 2858 -456 413 257 235 6 chr1 54120617 54120796 -228072868 + MIR SINE MIR 5 224 -38 268 336 45 0 chr1 54121236 54121346 -228072318 - MIR SINE MIR -122 140 26 354 308 23 15 chr1 54121432 54121562 -228072102 + MIR SINE MIR 21 151 -111 367 316 71 0 chr1 54122021 54122189 -228071475 - L1ME3A LINE L1 -229 5941 5762 600 143 176 0 chr1 54122196 54122315 -228071349 + MLT1A1 LTR MaLR 1 140 -225 224 279 10 39 chr1 54122554 54122658 -228071006 - L3 LINE CR1 -130 1447 1347 205 325 35 59 chr1 54123309 54123478 -228070186 + MIR3 SINE MIR 21 185 -23 430 227 24 78 chr1 54125883 54126085 -228067579 + MIR SINE MIR 17 212 -50 262 282 59 0 chr1 54126271 54126356 -228067308 + MIR SINE MIR 44 133 -75 1521 177 32 26 chr1 54127685 54127995 -228065669 - AluJo SINE Alu 0 312 1 194 158 0 0 chr1 54128209 54128247 -228065417 + L2 LINE L2 3027 3064 -208 270 0 0 0 chr1 54128763 54128793 -228064871 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 217 189 0 75 chr1 54129782 54129835 -228063829 - L3 LINE CR1 -5 1572 1524 447 298 28 28 chr1 54130331 54130512 -228063152 - MER117 DNA MER1_type -6 191 11 435 315 59 51 chr1 54130551 54130942 -228062722 + L2 LINE L2 1315 1708 -1606 315 263 159 6 chr1 54131634 54131808 -228061856 + MIR SINE MIR 33 241 -21 513 299 39 0 chr1 54131873 54132027 -228061637 - MIR SINE MIR -83 179 20 211 359 49 7 chr1 54132877 54133019 -228060645 + MIR3 SINE MIR 46 193 -15 195 139 0 0 chr1 54133250 54133286 -228060378 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 265 324 36 0 chr1 54134177 54134288 -228059376 - MIR3 SINE MIR -52 156 42 392 278 96 20 chr1 54135310 54135462 -228058202 - MIR SINE MIR -1 261 96 501 290 77 11 chr1 54136194 54136377 -228057287 - MIR SINE MIR -16 246 52 298 314 64 14 chr1 54137398 54137538 -228056126 + MIR3 SINE MIR 36 182 -26 250 216 194 29 chr1 54138126 54138265 -228055399 - MIR3 SINE MIR -5 203 42 270 231 64 0 chr1 54139763 54139841 -228053823 + MIR SINE MIR 62 144 -118 2467 93 30 35 chr1 54141022 54141388 -228052276 + THE1B LTR MaLR 1 364 0 365 295 8 8 chr1 54141711 54141833 -228051831 - MER5A DNA MER1_type -28 161 40 234 319 83 25 chr1 54142293 54142450 -228051214 - L3 LINE CR1 -9 1568 1403 748 280 106 10 chr1 54143251 54143562 -228050102 - L2 LINE L2 0 3313 2973 585 264 39 22 chr1 54143569 54143781 -228049883 + MIR SINE MIR 46 260 -2 624 281 94 5 chr1 54143865 54144089 -228049575 + MIR SINE MIR 11 254 -8 699 233 72 6 chr1 54145118 54145298 -228048366 + MIR SINE MIR 67 258 -4 671 192 254 5 chr1 54146301 54146494 -228047170 + MIR SINE MIR 2 242 -20 250 301 12 12 chr1 54147008 54147091 -228046573 - L2 LINE L2 0 3272 3190 231 229 102 59 chr1 54147809 54147927 -228045737 + MIR SINE MIR 20 142 -66 285 224 93 98 chr1 54148190 54148404 -228045260 - L2 LINE L2 -175 3097 2885 199 403 0 18 chr1 54148467 54148624 -228045040 + MIR SINE MIR 41 192 -63 349 318 163 4 chr1 54149515 54149773 -228043891 + L2 LINE L2 2022 2320 -994 229 295 0 26 chr1 54149939 54150017 -228043647 + L2 LINE L2 2577 2652 -662 348 288 63 0 chr1 54150064 54150175 -228043489 + L2 LINE L2 3155 3272 0 200 333 114 0 chr1 54151208 54151313 -228042351 + MIR SINE MIR 37 153 -55 1385 179 93 11 chr1 54151582 54151861 -228041803 - AluJo SINE Alu 0 302 1 198 250 202 0 chr1 54151936 54152040 -228041624 - MIR SINE MIR -14 248 124 238 375 10 0 chr1 54152144 54152248 -228041416 + L2 LINE L2 3145 3249 -23 310 320 0 0 chr1 54152337 54152412 -228041252 + MIR SINE MIR 80 154 -108 293 310 0 0 chr1 54153463 54153534 -228040130 - MER91B DNA MER1_type -119 71 1 584 256 67 59 chr1 54153855 54154093 -228039571 + MIR SINE MIR 21 260 -2 266 354 24 48 chr1 54154799 54155008 -228038656 - L2 LINE L2 -1 3271 3068 250 201 37 149 chr1 54155008 54155142 -228038522 - MER94 DNA DNA 0 134 16 430 303 0 0 chr1 54155789 54155911 -228037753 + MIR SINE MIR 65 186 -76 201 114 57 0 chr1 54156882 54156917 -228036747 - MIR SINE MIR -56 152 116 186 43 0 0 chr1 54156917 54156940 -228036724 + (GGGAA)n Simple_repeat Simple_repeat 5 27 0 320 325 85 35 chr1 54157200 54157693 -228035971 + L2 LINE L2 2570 3086 -186 353 247 12 0 chr1 54157712 54157797 -228035867 + MLT1H LTR MaLR 2 87 -462 295 200 53 13 chr1 54157881 54157956 -228035708 + MLT1H LTR MaLR 214 291 -258 299 322 59 8 chr1 54158107 54158225 -228035439 + L2 LINE L2 3148 3271 -42 239 289 13 0 chr1 54159095 54159171 -228034493 + MIR SINE MIR 181 257 -5 188 186 93 0 chr1 54159203 54159246 -228034418 - L3 LINE CR1 -7 1570 1524 382 269 40 48 chr1 54159482 54159639 -228034025 - MIR3 SINE MIR -46 162 14 217 264 38 65 chr1 54159766 54159897 -228033767 - MIR SINE MIR -69 139 35 684 248 90 26 chr1 54160156 54160390 -228033274 - MIR SINE MIR -9 253 5 281 297 59 8 chr1 54160442 54160560 -228033104 - MIR SINE MIR -124 138 15 463 168 32 0 chr1 54161189 54161284 -228032380 + ERVL-D LTR ERVL 5660 5757 -7 1966 164 33 63 chr1 54161284 54161619 -228032045 + MLT2D LTR ERVL 1 322 -92 180 0 0 0 chr1 54161619 54161639 -228032025 + (TG)n Simple_repeat Simple_repeat 2 21 0 1966 164 33 63 chr1 54161639 54161730 -228031934 + MLT2D LTR ERVL 322 414 0 349 298 127 19 chr1 54161771 54161929 -228031735 - L2 LINE L2 -344 2970 2796 401 256 77 39 chr1 54161947 54162103 -228031561 - MIR SINE MIR -81 181 20 278 356 38 30 chr1 54162579 54162711 -228030953 + L2 LINE L2 3140 3272 0 284 294 64 9 chr1 54163128 54163237 -228030427 + MIR SINE MIR 30 144 -64 798 227 32 28 chr1 54163248 54163464 -228030200 - L2 LINE L2 -3 3310 3094 186 227 0 0 chr1 54163464 54163508 -228030156 + (TG)n Simple_repeat Simple_repeat 2 45 0 826 223 0 17 chr1 54163520 54163695 -228029969 - AluJb SINE Alu -4 308 137 530 235 173 21 chr1 54163708 54163900 -228029764 - L2 LINE L2 -243 3070 2909 335 213 223 115 chr1 54163900 54164370 -228029294 - LTR33 LTR ERVL 0 521 1 530 235 173 21 chr1 54164370 54164488 -228029176 - L2 LINE L2 -404 2909 2723 200 349 0 0 chr1 54165313 54165379 -228028285 - MIR SINE MIR -46 216 151 1674 192 30 0 chr1 54165827 54166129 -228027535 + AluJo SINE Alu 1 311 -1 232 312 109 22 chr1 54167420 54167802 -228025862 - L2 LINE L2 -226 3046 2635 298 219 31 31 chr1 54168356 54168452 -228025212 - MIR SINE MIR -60 148 53 180 204 108 65 chr1 54169523 54169616 -228024048 - L2 LINE L2 -32 3240 3144 246 32 0 0 chr1 54169982 54170013 -228023651 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1195 264 68 28 chr1 54170013 54170609 -228023055 - L2 LINE L2 0 3313 2707 186 104 42 21 chr1 54171213 54171261 -228022403 + GA-rich Low_complexity Low_complexity 2 50 0 357 282 17 17 chr1 54171330 54171504 -228022160 + GA-rich Low_complexity Low_complexity 1 174 0 301 350 36 22 chr1 54171806 54171943 -228021721 - MER91A DNA MER1_type -13 183 45 190 214 36 36 chr1 54172037 54172093 -228021571 + MIR SINE MIR 76 131 -131 493 236 72 16 chr1 54172205 54172392 -228021272 - MIR SINE MIR -54 208 5 201 327 40 10 chr1 54173419 54173520 -228020144 + L3 LINE CR1 1422 1525 -52 214 239 15 15 chr1 54173703 54173770 -228019894 - MIR SINE MIR -151 111 45 260 273 40 40 chr1 54174303 54174402 -228019262 - MIR SINE MIR -148 114 16 866 324 67 31 chr1 54174798 54175245 -228018419 + L2 LINE L2 2810 3272 0 216 163 0 0 chr1 54176369 54176412 -228017252 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 234 207 0 35 chr1 54176445 54176503 -228017161 - L2 LINE L2 -40 3232 3177 257 266 219 0 chr1 54176692 54176817 -228016847 + MIR3 SINE MIR 2 153 -63 673 193 42 66 chr1 54176882 54177095 -228016569 - MIR SINE MIR -48 214 7 216 338 38 0 chr1 54178246 54178326 -228015338 + L2 LINE L2 2986 3068 -245 556 254 124 10 chr1 54178332 54178533 -228015131 + MLT1J2 LTR MaLR 2 225 -225 361 328 73 6 chr1 54178723 54178900 -228014764 + L2 LINE L2 3082 3270 -2 339 263 19 45 chr1 54178960 54179125 -228014539 + MIR SINE MIR 26 191 -64 354 338 18 38 chr1 54179475 54179685 -228013979 + MIR SINE MIR 44 249 -13 207 175 25 0 chr1 54180474 54180514 -228013150 - L2 LINE L2 -3 3310 3270 252 227 247 0 chr1 54180732 54180829 -228012835 + MIR3 SINE MIR 7 127 -81 * 274 252 37 47 chr1 54180811 54180918 -228012746 + MIR SINE MIR 153 258 -4 1930 258 159 26 chr1 54180922 54181246 -228012418 - L2 LINE L2 -37 3276 2996 1812 191 0 16 chr1 54181246 54181601 -228012063 + AluJb SINE Alu 1 312 0 1930 258 159 26 chr1 54181601 54182486 -228011178 - L2 LINE L2 -317 2996 1894 183 42 0 0 chr1 54182969 54182993 -228010671 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 226 296 12 12 chr1 54183793 54183874 -228009790 - L2 LINE L2 -1 3271 3191 961 214 34 30 chr1 54183917 54184151 -228009513 + MIR SINE MIR 28 262 0 622 228 105 9 chr1 54184150 54184369 -228009295 - L2 LINE L2 -68 3245 3006 * 545 260 156 5 chr1 54186438 54186630 -228007034 + MIR SINE MIR 22 242 -20 718 227 204 49 chr1 54186645 54187094 -228006570 - L2 LINE L2 -12 3301 2786 180 244 0 0 chr1 54187784 54187829 -228005835 + L2 LINE L2 3228 3272 0 1064 197 132 27 chr1 54188321 54188616 -228005048 + MER46C DNA MER2_type 12 337 -1 294 132 0 0 chr1 54188650 54188703 -228004961 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 188 324 40 0 chr1 54189326 54189400 -228004264 - L2 LINE L2 -213 3059 2983 583 283 183 16 chr1 54189497 54189879 -228003785 + LTR16A LTR ERVL 1 446 -4 399 315 31 17 chr1 54190092 54190284 -228003380 - MIR SINE MIR -20 242 45 207 326 47 23 chr1 54191319 54191405 -228002259 - L2 LINE L2 -68 3204 3117 275 335 101 17 chr1 54191469 54191648 -228002016 - L2 LINE L2 -73 3199 3006 1706 175 32 0 chr1 54192234 54192519 -228001145 - AluJo SINE Alu -18 294 1 662 125 100 0 chr1 54192540 54192660 -228001004 + MER3 DNA MER1_type 78 209 0 302 186 51 0 chr1 54192607 54192666 -228000998 - MER3 DNA MER1_type -106 103 42 * 252 304 156 70 chr1 54192682 54192939 -228000725 + L2 LINE L2 2896 3174 -98 207 222 83 14 chr1 54193194 54193266 -228000398 + L2 LINE L2 3202 3278 -35 219 297 48 61 chr1 54193891 54194056 -227999608 - L2 LINE L2 -213 3059 2897 216 293 13 13 chr1 54194900 54194975 -227998689 + MIR SINE MIR 183 257 -5 236 200 14 0 chr1 54195388 54195458 -227998206 + CT-rich Low_complexity Low_complexity 2 72 0 344 242 0 111 chr1 54195710 54195863 -227997801 - MIR3 SINE MIR -38 170 35 632 200 21 68 chr1 54195994 54196184 -227997480 - MIR SINE MIR -67 195 15 307 329 63 28 chr1 54197209 54197352 -227996312 - MIR3 SINE MIR -60 148 1 367 277 28 80 chr1 54197802 54198051 -227995613 + L1ME4a LINE L1 5805 6040 -81 310 288 81 9 chr1 54198133 54198244 -227995420 + MIR SINE MIR 76 194 -68 470 377 49 9 chr1 54198782 54199005 -227994659 + MIR SINE MIR 20 251 -11 504 275 81 0 chr1 54199588 54199737 -227993927 + MIR SINE MIR 58 218 -44 909 201 0 0 chr1 54199770 54200075 -227993589 + (CACCAT)n Simple_repeat Simple_repeat 1 305 0 327 264 0 11 chr1 54200075 54200162 -227993502 - MIR SINE MIR -55 153 68 209 299 8 60 chr1 54200840 54200957 -227992707 + MIR3 SINE MIR 4 114 -94 189 0 0 0 chr1 54201498 54201519 -227992145 + (CAGAGA)n Simple_repeat Simple_repeat 4 24 0 454 322 44 10 chr1 54202015 54202220 -227991444 - MIR SINE MIR -1 261 50 305 237 2 14 chr1 54202236 54202317 -227991347 - MIR SINE MIR -64 144 77 288 261 43 43 chr1 54202401 54202516 -227991148 + L2 LINE L2 2607 2721 -593 194 274 0 20 chr1 54202879 54202930 -227990734 + L2 LINE L2 3138 3187 -85 225 238 96 15 chr1 54202962 54203106 -227990558 - MIR SINE MIR -76 132 16 196 306 139 29 chr1 54203653 54203826 -227989838 - MIR3 SINE MIR -12 196 5 246 310 0 0 chr1 54203869 54204011 -227989653 + (CA)n Simple_repeat Simple_repeat 1 142 0 277 319 73 35 chr1 54204045 54204226 -227989438 + MIR3 SINE MIR 10 192 -68 1051 216 9 9 chr1 54204295 54204522 -227989142 + MIR SINE MIR 31 257 -5 251 191 0 0 chr1 54204563 54204610 -227989054 + L2 LINE L2 3224 3270 -2 691 251 72 48 chr1 54205208 54205459 -227988205 - MIR SINE MIR -2 260 4 434 328 61 35 chr1 54205560 54205789 -227987875 + MIR SINE MIR 20 254 -8 262 242 136 68 chr1 54206050 54206182 -227987482 - MIR3 SINE MIR -32 176 36 387 0 0 0 chr1 54206314 54206357 -227987307 + (CA)n Simple_repeat Simple_repeat 2 44 0 209 344 0 42 chr1 54206433 54206529 -227987135 - MIR SINE MIR -10 252 161 182 132 26 0 chr1 54206855 54206893 -227986771 + L2 LINE L2 3275 3313 0 556 309 27 23 chr1 54206968 54207224 -227986440 - LTR16B LTR ERVL -16 448 192 3324 212 57 11 chr1 54207977 54208868 -227984796 - L1ME1 LINE L1 0 6166 5230 1861 195 34 31 chr1 54208864 54209341 -227984323 - L1ME1 LINE L1 -2060 4086 3609 * 302 387 95 0 chr1 54209523 54209745 -227983919 - MIR SINE MIR 0 262 20 352 319 70 0 chr1 54209767 54209924 -227983740 - MIR SINE MIR -7 255 88 270 304 113 9 chr1 54210382 54210497 -227983167 - MIR SINE MIR -61 147 21 454 288 7 14 chr1 54211496 54211635 -227982029 - MIR SINE MIR -73 189 52 527 207 124 21 chr1 54211714 54211859 -227981805 - MIR SINE MIR -24 238 79 445 88 0 0 chr1 54211952 54212020 -227981644 - Alu SINE Alu 0 312 245 185 364 10 20 chr1 54212148 54212247 -227981417 + L2 LINE L2 3031 3128 -144 200 281 0 16 chr1 54212256 54212320 -227981344 + L3 LINE CR1 1385 1447 -130 193 281 47 0 chr1 54212473 54212537 -227981127 + MIR SINE MIR 81 147 -61 823 270 189 8 chr1 54212554 54212924 -227980740 + MLT1J LTR MaLR 1 437 -74 230 196 0 0 chr1 54212980 54213026 -227980638 + MIR SINE MIR 162 207 -55 647 220 119 0 chr1 54213551 54213710 -227979954 - MER45A DNA AcHobo 0 178 1 180 325 188 12 chr1 54214804 54215059 -227978605 - L3 LINE CR1 -165 1412 1113 531 200 84 52 chr1 54215627 54215805 -227977859 - MIR SINE MIR -46 216 34 191 136 17 119 chr1 54216649 54216708 -227976956 - L2 LINE L2 -44 3228 3176 293 242 0 77 chr1 54216873 54216964 -227976700 + L2 LINE L2 3228 3311 -2 371 290 65 0 chr1 54217315 54217439 -227976225 - MIR SINE MIR -118 144 13 286 337 108 75 chr1 54218082 54218509 -227975155 - L2 LINE L2 0 3272 2832 571 293 58 16 chr1 54218697 54218885 -227974779 - MIR SINE MIR -21 241 46 2010 139 0 41 chr1 54219241 54219558 -227974106 + AluJo SINE Alu 1 304 -8 440 289 92 7 chr1 54220191 54220343 -227973321 - MIR SINE MIR -90 172 8 211 322 109 28 chr1 54220742 54220953 -227972711 + L2 LINE L2 2967 3194 -78 302 330 0 0 chr1 54220953 54221101 -227972563 + (TAAA)n Simple_repeat Simple_repeat 1 148 0 367 237 43 21 chr1 54221330 54221423 -227972241 + MIR3 SINE MIR 65 159 -49 219 337 23 0 chr1 54221898 54221984 -227971680 + MIR SINE MIR 135 222 -40 323 256 47 0 chr1 54222003 54222089 -227971575 - MIR SINE MIR -97 165 76 290 312 112 16 chr1 54222483 54222608 -227971056 + L2 LINE L2 3136 3272 0 * 341 321 87 38 chr1 54222596 54222780 -227970884 - MIR3 SINE MIR 0 208 16 551 293 116 18 chr1 54223670 54223895 -227969769 - MIR SINE MIR -8 254 8 330 307 39 17 chr1 54224302 54224456 -227969208 + MIR SINE MIR 18 179 -29 * 655 313 62 65 chr1 54224439 54225247 -227968417 + L2 LINE L2 2459 3272 0 2313 130 61 15 chr1 54225349 54225702 -227967962 + MLT2D LTR ERVL 3 377 -37 597 28 0 0 chr1 54225702 54225773 -227967891 + (CA)n Simple_repeat Simple_repeat 2 72 0 2313 130 61 15 chr1 54225773 54225810 -227967854 + MLT2D LTR ERVL 377 411 -3 205 227 168 84 chr1 54226808 54226927 -227966737 - L3 LINE CR1 -33 1544 1416 333 279 86 43 chr1 54227281 54227421 -227966243 - MIR SINE MIR 0 262 117 309 282 100 9 chr1 54227522 54227632 -227966032 - MIR SINE MIR -19 243 124 301 315 93 3 chr1 54227691 54227980 -227965684 - L1M4 LINE L1 -1628 4518 4204 239 216 20 0 chr1 54229536 54229587 -227964077 + MIR SINE MIR 96 147 -61 661 213 156 6 chr1 54229738 54229898 -227963766 + MER5A DNA MER1_type 6 189 0 354 264 11 11 chr1 54229916 54230007 -227963657 - MIR SINE MIR -57 151 61 662 270 30 30 chr1 54230016 54230216 -227963448 + MIR SINE MIR 2 201 -61 194 342 63 0 chr1 54230613 54230692 -227962972 + L2 LINE L2 2972 3055 -217 364 270 36 36 chr1 54230823 54230934 -227962730 + L2 LINE L2 2919 3029 -243 714 236 64 0 chr1 54230956 54231113 -227962551 - MER96 DNA MER1_type? 0 175 9 367 322 48 39 chr1 54231122 54231330 -227962334 + L2 LINE L2 3046 3255 -17 420 276 8 16 chr1 54232588 54232715 -227960949 - MIR SINE MIR -61 147 22 597 229 26 33 chr1 54232797 54232950 -227960714 + L2 LINE L2 3162 3313 0 197 241 17 35 chr1 54233060 54233118 -227960546 - MIR3 SINE MIR -6 202 146 840 263 121 16 chr1 54233218 54233671 -227959993 + MLT1H1 LTR MaLR 55 555 0 203 281 198 16 chr1 54233673 54233794 -227959870 - L2 LINE L2 -168 3145 3003 466 196 40 181 chr1 54233809 54234135 -227959529 - L2 LINE L2 -899 2415 2136 573 280 113 16 chr1 54234147 54234458 -227959206 - L2 LINE L2 -1426 1888 1548 385 265 229 0 chr1 54234523 54234676 -227958988 + MIR SINE MIR 42 214 -39 227 280 114 107 chr1 54234890 54234910 -227958754 + L2 LINE L2 2814 2832 -440 2293 99 0 23 chr1 54234910 54235214 -227958450 - AluY SINE Alu -14 297 1 227 280 114 107 chr1 54235214 54235464 -227958200 + L2 LINE L2 2832 3086 -186 981 194 55 20 chr1 54235618 54235819 -227957845 + MER3 DNA MER1_type 1 208 -1 202 221 174 47 chr1 54235859 54235945 -227957719 - MIR SINE MIR -15 247 151 265 278 104 17 chr1 54236848 54236963 -227956701 + L2 LINE L2 2930 3054 -218 648 292 98 17 chr1 54237043 54237279 -227956385 - MIR SINE MIR 0 262 8 195 42 0 0 chr1 54237631 54237655 -227956009 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 263 323 152 34 chr1 54237695 54237801 -227955863 - L2 LINE L2 -104 3209 3117 2487 77 3 3 chr1 54237801 54238112 -227955552 + AluY SINE Alu 1 311 0 263 323 152 34 chr1 54238112 54238361 -227955303 - L2 LINE L2 -196 3117 2812 214 280 13 61 chr1 54238574 54238660 -227955004 + MIR SINE MIR 67 147 -67 217 289 0 0 chr1 54238773 54238825 -227954839 + L2 LINE L2 3218 3269 -3 201 74 0 0 chr1 54238985 54239012 -227954652 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 238 317 37 5 chr1 54239609 54239703 -227953961 - MIR SINE MIR -60 148 56 194 302 155 26 chr1 54239710 54239826 -227953838 - MIR SINE MIR -114 148 18 254 230 239 58 chr1 54240266 54240492 -227953172 + L2 LINE L2 2907 3173 -99 397 263 50 61 chr1 54241388 54241586 -227952078 + MIR SINE MIR 67 262 0 231 299 167 59 chr1 54242158 54242446 -227951218 - L2 LINE L2 -17 3296 2978 189 121 0 0 chr1 54242448 54242481 -227951183 + (TG)n Simple_repeat Simple_repeat 2 34 0 39707 65 6 3 chr1 54244035 54250173 -227943491 + L1PA5 LINE L1 4 6154 0 839 251 148 5 chr1 54250351 54250574 -227943090 - MIR SINE MIR 0 262 8 220 328 62 0 chr1 54252572 54252636 -227941028 - MIR3 SINE MIR -46 162 95 243 161 0 0 chr1 54252991 54253047 -227940617 + G-rich Low_complexity Low_complexity 1 56 0 201 171 24 0 chr1 54253344 54253385 -227940279 + (CCCCAG)n Simple_repeat Simple_repeat 1 42 0 2086 138 0 0 chr1 54254419 54254747 -227938917 + AluSx SINE Alu 1 328 0 497 289 127 13 chr1 54254847 54255075 -227938589 - L3 LINE CR1 -73 1504 1251 333 0 0 0 chr1 54255133 54255170 -227938494 + (CA)n Simple_repeat Simple_repeat 2 38 0 497 282 18 64 chr1 54256516 54256736 -227936928 + L2 LINE L2 3099 3308 -5 312 259 78 0 chr1 54256812 54256928 -227936736 - MER117 DNA MER1_type -49 148 24 241 207 52 0 chr1 54257294 54257352 -227936312 - MIR SINE MIR -64 144 84 245 244 98 12 chr1 54257368 54257450 -227936214 + L2 LINE L2 3148 3236 -36 287 250 11 65 chr1 54257974 54258066 -227935598 - L2 LINE L2 0 3313 3227 214 327 60 48 chr1 54258066 54258317 -227935347 + L2 LINE L2 2618 2871 -443 479 245 82 14 chr1 54258364 54258511 -227935153 - MLT1H LTR MaLR 0 549 393 312 298 102 31 chr1 54258523 54258748 -227934916 - MLT1I LTR MaLR -101 308 68 239 318 47 37 chr1 54258992 54259099 -227934565 - L2 LINE L2 -1 3271 3164 208 147 0 0 chr1 54259902 54259936 -227933728 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1630 177 25 47 chr1 54260144 54260506 -227933158 + MLT1A1 LTR MaLR 1 354 -11 197 286 20 0 chr1 54260832 54260881 -227932783 + L2 LINE L2 3254 3303 -10 725 296 137 55 chr1 54261312 54261616 -227932048 + L2 LINE L2 2373 2651 -662 1751 171 0 18 chr1 54261616 54261902 -227931762 + AluJb SINE Alu 1 281 -31 725 296 137 55 chr1 54261902 54262471 -227931193 + L2 LINE L2 2651 3303 -10 3526 154 53 8 chr1 54262476 54263111 -227930553 + L1MC3 LINE L1 7121 7784 -1 239 300 121 29 chr1 54263872 54264012 -227929652 + L2 LINE L2 3160 3312 -1 667 278 95 16 chr1 54264239 54264491 -227929173 - L2 LINE L2 -7 3306 3035 1297 96 100 43 chr1 54264622 54264852 -227928812 - L1MD2 LINE L1 -1 6358 6116 1849 168 13 10 chr1 54264863 54265166 -227928498 - AluSx SINE Alu -8 304 1 382 268 101 39 chr1 54265254 54265433 -227928231 - MIR SINE MIR -36 226 37 351 287 11 0 chr1 54265667 54265761 -227927903 + MIR SINE MIR 59 153 -55 1831 169 17 36 chr1 54265834 54266190 -227927474 + MLT1A1 LTR MaLR 17 365 0 218 333 18 0 chr1 54267125 54267182 -227926482 - L2 LINE L2 -93 3179 3122 209 321 64 9 chr1 54267821 54267930 -227925734 + L2 LINE L2 2745 2859 -455 2156 135 6 16 chr1 54268797 54269108 -227924556 - AluSx SINE Alu -4 308 1 823 259 44 5 chr1 54269138 54269343 -227924321 + MIR SINE MIR 17 229 -33 597 246 154 5 chr1 54270108 54270303 -227923361 - MIR SINE MIR -4 258 35 244 294 182 21 chr1 54270337 54270480 -227923184 + MIR SINE MIR 77 242 -20 3536 102 21 4 chr1 54270770 54271290 -227922374 + L1PA14 LINE L1 5633 6161 0 204 40 0 0 chr1 54271543 54271568 -227922096 + (A)n Simple_repeat Simple_repeat 1 25 0 262 267 95 17 chr1 54272651 54272767 -227920897 + L2 LINE L2 3180 3304 -9 478 199 227 7 chr1 54272808 54272949 -227920715 - MIR SINE MIR -6 256 85 287 279 0 0 chr1 54273676 54273755 -227919909 - L2 LINE L2 -270 3002 2924 272 305 35 64 chr1 54274411 54274552 -227919112 - L2 LINE L2 -204 3068 2932 185 203 78 78 chr1 54275020 54275084 -227918580 + L3 LINE CR1 1513 1576 -1 237 143 107 18 chr1 54276077 54276133 -227917531 + MIR SINE MIR 111 171 -91 407 297 28 14 chr1 54276519 54276664 -227917000 - MIR3 SINE MIR -10 198 52 1734 201 30 0 chr1 54276686 54277025 -227916639 + MLT1A1 LTR MaLR 1 349 -16 349 272 11 11 chr1 54277399 54277491 -227916173 + MARNA DNA Mariner 138 229 -357 336 24 0 0 chr1 54277544 54277585 -227916079 + (CA)n Simple_repeat Simple_repeat 2 42 0 360 385 54 14 chr1 54277637 54277858 -227915806 + MIR SINE MIR 21 250 -12 576 0 0 0 chr1 54278565 54278629 -227915035 + (TA)n Simple_repeat Simple_repeat 1 64 0 372 249 195 38 chr1 54278909 54279104 -227914560 + MIR SINE MIR 5 233 -29 610 280 0 32 chr1 54279111 54279268 -227914396 - MIR3 SINE MIR -6 202 51 810 262 30 21 chr1 54282512 54282745 -227910919 + MIR SINE MIR 14 248 -14 330 87 0 0 chr1 54283287 54283333 -227910331 + (TG)n Simple_repeat Simple_repeat 2 47 0 26 0 0 0 chr1 54285107 54285133 -227908531 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 54285252 54285273 -227908391 + GC_rich Low_complexity Low_complexity 1 21 0 212 75 0 25 chr1 54285275 54285315 -227908349 + (CCGGG)n Simple_repeat Simple_repeat 3 41 0 200 100 25 0 chr1 54285380 54285420 -227908244 + (CTCG)n Simple_repeat Simple_repeat 2 42 0 230 208 38 0 chr1 54285491 54285544 -227908120 + C-rich Low_complexity Low_complexity 3 57 0 238 284 107 95 chr1 54286205 54286532 -227907132 - L2 LINE L2 -107 3165 2835 219 286 11 33 chr1 54286684 54286775 -227906889 - MIR3 SINE MIR -117 91 3 364 206 0 0 chr1 54286949 54287017 -227906647 - MER116 DNA Mariner -11 69 2 1880 178 40 58 chr1 54287675 54288272 -227905392 + L1MB8 LINE L1 5630 6177 -3 258 316 17 109 chr1 54288381 54288555 -227905109 + MIR3 SINE MIR 20 177 -31 2222 117 3 3 chr1 54289241 54289549 -227904115 + AluSg SINE Alu 1 308 -2 353 305 88 67 chr1 54289748 54290076 -227903588 - L2 LINE L2 -107 3165 2831 1072 153 0 5 chr1 54290396 54290585 -227903079 - L1M2 LINE L1 -594 5718 5531 332 113 48 0 chr1 54290592 54290654 -227903010 + L1MA9 LINE L1 6014 6078 -234 341 201 13 94 chr1 54290655 54290755 -227902909 + L1MA9 LINE L1 6176 6262 -50 2412 78 3 3 chr1 54290755 54291051 -227902613 - AluSq SINE Alu -17 296 1 341 201 13 94 chr1 54291051 54291099 -227902565 + L1MA9 LINE L1 6262 6312 0 367 313 36 0 chr1 54291506 54291618 -227902046 - MIR SINE MIR -86 176 61 311 0 26 0 chr1 54291712 54291751 -227901913 + (CA)n Simple_repeat Simple_repeat 2 41 0 465 300 30 14 chr1 54292137 54292313 -227901351 + MIR SINE MIR 3 179 -62 809 168 139 0 chr1 54292318 54292491 -227901173 + MER20 DNA MER1_type 23 219 0 752 241 51 10 chr1 54292517 54292712 -227900952 - MIR SINE MIR 0 262 60 333 243 166 18 chr1 54292828 54292997 -227900667 - L2 LINE L2 0 3313 3120 347 289 19 19 chr1 54293004 54293163 -227900501 - L2 LINE L2 -262 3010 2852 677 172 0 0 chr1 54293165 54293281 -227900383 - AluSg/x SINE Alu -8 302 187 2164 279 164 38 chr1 54293283 54294450 -227899214 - L2 LINE L2 -452 2862 1510 2267 103 0 29 chr1 54294450 54294761 -227898903 - AluSc SINE Alu -7 302 1 2164 279 164 38 chr1 54294761 54294900 -227898764 - L2 LINE L2 -1804 1510 1390 1963 167 6 6 chr1 54295541 54295853 -227897811 + AluJb SINE Alu 1 312 0 240 326 33 22 chr1 54295904 54295996 -227897668 - L3 LINE CR1 -56 1521 1429 428 286 0 18 chr1 54296017 54296129 -227897535 + MIR SINE MIR 103 212 -50 483 261 146 18 chr1 54296319 54296484 -227897180 + MER91A DNA MER1_type 1 186 -10 607 322 99 17 chr1 54296722 54297076 -227896588 - L3 LINE CR1 -56 1521 1139 249 250 0 0 chr1 54297171 54297227 -227896437 - MIR SINE MIR -79 129 73 1673 169 16 41 chr1 54297468 54297788 -227895876 + AluJo SINE Alu 1 312 0 1550 215 25 12 chr1 54298126 54298246 -227895418 - L1ME LINE L1 -630 5536 5419 1780 157 9 49 chr1 54298246 54298571 -227895093 - AluJo SINE Alu 0 312 1 1550 215 25 12 chr1 54298571 54299019 -227894645 - L1ME LINE L1 -747 5419 4960 246 203 14 43 chr1 54299048 54299186 -227894478 + CT-rich Low_complexity Low_complexity 2 135 0 784 227 60 2 chr1 54299674 54299909 -227893755 - L1MDa LINE L1 -1192 5348 5092 2132 160 46 3 chr1 54299914 54300121 -227893543 + MSTB LTR MaLR 1 197 -229 195 42 0 0 chr1 54300121 54300145 -227893519 + (TC)n Simple_repeat Simple_repeat 2 25 0 2132 160 46 3 chr1 54300145 54300325 -227893339 + MSTB LTR MaLR 197 405 -21 987 247 72 13 chr1 54300329 54300705 -227892959 - L1MDa LINE L1 -1463 5077 4680 3436 235 78 9 chr1 54300734 54301918 -227891746 - L1MDa LINE L1 -2826 3714 2474 293 315 11 0 chr1 54301976 54302068 -227891596 + CT-rich Low_complexity Low_complexity 3 95 0 248 227 0 30 chr1 54302130 54302196 -227891468 + CT-rich Low_complexity Low_complexity 1 64 0 1579 295 62 78 chr1 54302508 54303323 -227890341 - L1ME LINE L1 -512 5658 4859 818 266 181 44 chr1 54303323 54303781 -227889883 - LTR33 LTR ERVL 0 521 1 1579 295 62 78 chr1 54303781 54304293 -227889371 - L1ME LINE L1 -1311 4859 4340 445 312 36 7 chr1 54304335 54304473 -227889191 - L2 LINE L2 -14 3258 3117 233 250 62 0 chr1 54304630 54304694 -227888970 + MIR3 SINE MIR 110 177 -31 191 343 126 30 chr1 54304846 54305044 -227888620 - L2 LINE L2 -1023 2291 2075 305 247 39 13 chr1 54305274 54305351 -227888313 + MIR SINE MIR 116 194 -68 198 103 0 0 chr1 54306380 54306409 -227887255 + (T)n Simple_repeat Simple_repeat 1 29 0 267 354 10 10 chr1 54306568 54306667 -227886997 - MIR SINE MIR -84 124 26 345 303 141 14 chr1 54307232 54307374 -227886290 - MIR SINE MIR 0 262 103 420 283 33 57 chr1 54307412 54307583 -227886081 - MIR3 SINE MIR -59 149 1 220 287 138 11 chr1 54308003 54308090 -227885574 + MIR3 SINE MIR 83 180 -28 283 326 62 118 chr1 54308559 54308905 -227884759 - L2 LINE L2 0 3272 2959 2734 51 3 0 chr1 54308905 54309236 -227884428 + L1PA5 LINE L1 5820 6151 -3 283 326 62 118 chr1 54309236 54309371 -227884293 - L2 LINE L2 -313 2959 2818 583 274 23 34 chr1 54309429 54309604 -227884060 - MER5A DNA MER1_type -5 184 12 469 259 252 19 chr1 54309611 54309904 -227883760 - L2 LINE L2 -164 3149 2800 338 257 54 86 chr1 54310397 54310619 -227883045 + MIR SINE MIR 29 243 -19 228 323 105 0 chr1 54311281 54311405 -227882259 - L2 LINE L2 0 3272 3136 232 215 127 38 chr1 54311521 54311600 -227882064 - L2 LINE L2 0 3272 3187 21 0 0 0 chr1 54311601 54311622 -227882042 + AT_rich Low_complexity Low_complexity 1 21 0 213 344 70 16 chr1 54313233 54313361 -227880303 + MIR SINE MIR 48 182 -80 848 193 32 27 chr1 54313372 54313559 -227880105 - MER5A DNA MER1_type 0 189 2 256 342 136 20 chr1 54313643 54313842 -227879822 - L3 LINE CR1 -377 1200 979 263 242 32 40 chr1 54314614 54314738 -227878926 + MER103 DNA DNA 25 147 -19 382 331 56 0 chr1 54314873 54315015 -227878649 + MIR SINE MIR 102 251 -11 224 278 175 32 chr1 54315679 54315805 -227877859 - MIR SINE MIR -6 256 113 800 236 25 66 chr1 54316822 54316865 -227876799 + L2 LINE L2 2513 2556 -758 2137 102 28 3 chr1 54316865 54317149 -227876515 - AluSg SINE Alu -19 291 1 800 236 25 66 chr1 54317149 54317347 -227876317 + L2 LINE L2 2556 2744 -570 736 151 0 17 chr1 54317352 54317471 -227876193 + FRAM SINE Alu 58 174 -2 715 266 157 40 chr1 54317541 54317969 -227875695 + L2 LINE L2 2836 3313 0 344 292 189 41 chr1 54318657 54319023 -227874641 - L3 LINE CR1 -37 1540 1121 2910 164 48 5 chr1 54319118 54319659 -227874005 + L1MB4 LINE L1 5530 6105 -61 1781 155 24 20 chr1 54319659 54319956 -227873708 - AluJo SINE Alu -14 298 1 2910 164 48 5 chr1 54319956 54320018 -227873646 + L1MB4 LINE L1 6105 6163 -3 2524 58 7 0 chr1 54320020 54320311 -227873353 - AluY SINE Alu -18 293 1 392 328 164 5 chr1 54320484 54320673 -227872991 - MIR SINE MIR -36 226 8 264 167 0 0 chr1 54320715 54320763 -227872901 + (CA)n Simple_repeat Simple_repeat 2 49 0 183 222 0 0 chr1 54320927 54320963 -227872701 - L2 LINE L2 -226 3046 3011 278 280 53 0 chr1 54321644 54321719 -227871945 - MER91C DNA MER1_type -30 110 32 785 251 38 5 chr1 54321922 54322140 -227871524 + MIR SINE MIR 36 257 -5 373 316 33 20 chr1 54322228 54322380 -227871284 + MIR3 SINE MIR 44 197 -11 346 287 66 59 chr1 54322991 54323127 -227870537 - MIR3 SINE MIR -35 173 37 196 275 159 0 chr1 54323221 54323290 -227870374 - L2 LINE L2 -4 3268 3189 422 269 34 94 chr1 54324300 54324534 -227869130 + L3 LINE CR1 1297 1516 -61 237 252 158 93 chr1 54324590 54324729 -227868935 + L2 LINE L2 3125 3272 0 1064 129 6 0 chr1 54325681 54325844 -227867820 + L1PA10 LINE L1 6005 6168 0 340 328 74 15 chr1 54325958 54326115 -227867549 - MIR SINE MIR -52 210 38 682 214 14 0 chr1 54326578 54326723 -227866941 - MIR SINE MIR 0 262 116 243 361 77 0 chr1 54328288 54328418 -227865246 + MIR SINE MIR 117 256 -6 237 272 128 24 chr1 54328510 54328635 -227865029 - L2 LINE L2 -45 3227 3090 249 243 48 0 chr1 54328642 54328725 -227864939 - MIR SINE MIR -61 147 101 361 309 106 64 chr1 54328802 54328990 -227864674 + L2 LINE L2 3068 3263 -9 670 252 8 33 chr1 54329882 54330077 -227863587 + MIR SINE MIR 3 192 -62 295 268 103 21 chr1 54330599 54330696 -227862968 + L2 LINE L2 3209 3313 0 372 239 128 9 chr1 54331213 54331322 -227862342 + L3 LINE CR1 1344 1465 -112 223 331 25 50 chr1 54331380 54331501 -227862163 + MIR SINE MIR 20 137 -71 810 283 127 9 chr1 54332107 54332446 -227861218 + MLT2F LTR ERVL 1 379 -284 751 203 21 16 chr1 54332480 54332667 -227860997 + MLT2F LTR ERVL 469 656 -7 250 355 51 90 chr1 54332674 54332743 -227860921 + L2 LINE L2 2824 2894 -378 2070 123 40 3 chr1 54332743 54333044 -227860620 - AluSx SINE Alu 0 312 1 250 355 51 90 chr1 54333044 54333212 -227860452 + L2 LINE L2 2894 3067 -205 6176 28 0 0 chr1 54333212 54333924 -227859740 - L1PA4 LINE L1 0 6155 5444 250 355 51 90 chr1 54333924 54334152 -227859512 + L2 LINE L2 3067 3272 0 241 218 35 0 chr1 54334152 54334239 -227859425 + GA-rich Low_complexity Low_complexity 1 90 0 212 226 32 0 chr1 54334359 54334421 -227859243 + L2 LINE L2 3165 3228 -85 248 295 145 18 chr1 54334516 54334682 -227858982 + L2 LINE L2 2854 3040 -232 346 278 118 94 chr1 54335159 54335633 -227858031 - L2 LINE L2 -50 3222 2735 365 253 11 132 chr1 54335695 54335869 -227857795 + MIR3 SINE MIR 54 206 -2 21 0 0 0 chr1 54335879 54335900 -227857764 + AT_rich Low_complexity Low_complexity 1 21 0 232 390 6 37 chr1 54335940 54336104 -227857560 - L2 LINE L2 -112 3160 3002 328 299 114 6 chr1 54336401 54336568 -227857096 - MIR SINE MIR -28 234 50 351 256 110 78 chr1 54337063 54337278 -227856386 + MIR SINE MIR 16 241 -21 506 217 217 29 chr1 54337314 54337489 -227856175 + MIR SINE MIR 34 241 -21 182 273 0 0 chr1 54337821 54337865 -227855799 - MIR3 SINE MIR -7 201 158 296 260 23 107 chr1 54338338 54338515 -227855149 + L2 LINE L2 2544 2705 -609 330 337 53 76 chr1 54338682 54338985 -227854679 - L2 LINE L2 0 3272 2977 319 330 84 29 chr1 54339024 54339089 -227854575 + L2 LINE L2 3016 3076 -196 755 193 112 6 chr1 54339089 54339250 -227854414 + MER45A DNA AcHobo 1 178 0 319 330 84 29 chr1 54339250 54339423 -227854241 + L2 LINE L2 3076 3267 -5 357 62 0 0 chr1 54340151 54340199 -227853465 + (CA)n Simple_repeat Simple_repeat 2 49 0 795 226 113 22 chr1 54340756 54340986 -227852678 + MIR SINE MIR 2 252 -10 347 290 160 29 chr1 54341225 54341463 -227852201 - L3 LINE CR1 -94 1483 1215 206 294 0 0 chr1 54341687 54341738 -227851926 + (TG)n Simple_repeat Simple_repeat 1 51 0 617 291 23 6 chr1 54342126 54342301 -227851363 + MER91A DNA MER1_type 11 188 -8 207 282 121 40 chr1 54342395 54342519 -227851145 - L2 LINE L2 -20 3252 3119 545 266 29 90 chr1 54344056 54344185 -227849479 + MIR SINE MIR 34 143 -119 695 204 8 0 chr1 54344185 54344317 -227849347 - MER94 DNA DNA -1 133 1 545 266 29 90 chr1 54344317 54344431 -227849233 + MIR SINE MIR 143 262 0 310 332 94 42 chr1 54344812 54344979 -227848685 - L2 LINE L2 -458 2856 2668 1731 203 0 7 chr1 54344979 54345280 -227848384 + AluJo SINE Alu 1 299 -13 310 332 94 42 chr1 54345280 54345377 -227848287 - L2 LINE L2 -646 2668 2578 690 277 68 34 chr1 54345491 54345726 -227847938 - MIR SINE MIR -13 249 7 329 297 7 134 chr1 54347189 54347465 -227846199 + L2 LINE L2 2946 3186 -86 200 108 0 27 chr1 54348077 54348114 -227845550 + (TAA)n Simple_repeat Simple_repeat 3 38 0 352 220 0 110 chr1 54348199 54348317 -227845347 - MIR SINE MIR -86 122 18 303 253 77 22 chr1 54348479 54348570 -227845094 + MIR3 SINE MIR 59 154 -54 371 234 131 15 chr1 54348582 54348719 -227844945 + MIR SINE MIR 104 256 -6 334 376 8 8 chr1 54349926 54350051 -227843613 - MIR SINE MIR -62 146 22 541 285 78 6 chr1 54350812 54350991 -227842673 + MIR SINE MIR 21 212 -50 328 354 31 8 chr1 54352339 54352466 -227841198 - MIR3 SINE MIR -64 144 15 1200 91 0 0 chr1 54352564 54352740 -227840924 + (TCCA)n Simple_repeat Simple_repeat 1 176 0 276 349 62 62 chr1 54352743 54353015 -227840649 - L2 LINE L2 -4 3268 2997 240 164 41 96 chr1 54353399 54353472 -227840192 + L2 LINE L2 3240 3308 -5 329 250 173 0 chr1 54354195 54354299 -227839365 + L2 LINE L2 3142 3263 -9 357 233 117 46 chr1 54354438 54354604 -227839060 + MIR SINE MIR 20 192 -62 238 333 14 0 chr1 54355023 54355095 -227838569 - L3 LINE CR1 -3 1574 1502 185 293 73 0 chr1 54355210 54355292 -227838372 + MIR SINE MIR 125 212 -50 237 299 79 39 chr1 54355563 54355690 -227837974 + L2 LINE L2 2928 3059 -213 509 262 53 59 chr1 54355893 54356087 -227837577 + MIR SINE MIR 4 195 -57 280 320 41 10 chr1 54356505 54356602 -227837062 + L2 LINE L2 3209 3308 -5 472 311 169 14 chr1 54359260 54359479 -227834185 + MIR SINE MIR 9 261 -1 394 265 80 13 chr1 54359504 54359655 -227834009 + MIR SINE MIR 47 207 -55 2367 73 0 20 chr1 54359801 54360104 -227833560 - AluY SINE Alu -14 297 1 226 329 102 60 chr1 54360405 54360545 -227833119 + MIR3 SINE MIR 21 171 -37 1277 186 69 106 chr1 54360545 54360922 -227832742 + MLT1A1 LTR MaLR 3 365 0 226 329 102 60 chr1 54360922 54360948 -227832716 + MIR3 SINE MIR 171 194 -14 254 275 125 0 chr1 54361189 54361269 -227832395 + L2 LINE L2 3183 3272 0 430 281 19 70 chr1 54361594 54361815 -227831849 - MIR SINE MIR -22 186 6 816 261 115 0 chr1 54362418 54362652 -227831012 + MIR SINE MIR 1 261 -1 1244 195 102 47 chr1 54363297 54363641 -227830023 - MLT1A1 LTR MaLR -2 363 1 243 0 0 0 chr1 54363843 54363870 -227829794 + (TA)n Simple_repeat Simple_repeat 1 27 0 297 290 65 0 chr1 54364731 54364824 -227828840 - MIR SINE MIR -88 174 76 188 291 139 0 chr1 54365282 54365361 -227828303 + L2 LINE L2 3179 3268 -4 352 333 55 20 chr1 54366142 54366373 -227827291 + MIR SINE MIR 15 256 -6 544 261 39 28 chr1 54366376 54366556 -227827108 + L2 LINE L2 3132 3313 0 394 335 91 28 chr1 54366636 54366812 -227826852 - MIR3 SINE MIR -21 187 1 230 145 32 0 chr1 54366912 54366974 -227826690 + (CAGA)n Simple_repeat Simple_repeat 2 65 0 463 206 24 109 chr1 54367278 54367443 -227826221 - MIR SINE MIR -1 261 111 192 323 201 20 chr1 54367632 54367886 -227825778 - L2 LINE L2 -39 3233 2934 1717 127 87 0 chr1 54369458 54369733 -227823931 + AluJo SINE Alu 14 312 0 243 356 9 39 chr1 54370111 54370262 -227823402 - MIR3 SINE MIR -77 131 4 1740 171 9 19 chr1 54371091 54371406 -227822258 - AluJb SINE Alu 0 312 1 1235 257 87 14 chr1 54371406 54371519 -227822145 - MLT1J2 LTR MaLR -66 384 281 1333 177 23 5 chr1 54371519 54371734 -227821930 + MER20 DNA MER1_type 1 219 0 1235 257 87 14 chr1 54371734 54371978 -227821686 - MLT1J2 LTR MaLR -169 281 1 264 305 51 42 chr1 54372384 54372502 -227821162 + MIR3 SINE MIR 6 124 -84 1270 166 18 14 chr1 54373046 54373269 -227820395 + MER30 DNA MER1_type 7 230 0 493 257 50 21 chr1 54374334 54374351 -227819313 - L1MA10 LINE L1 -1 6333 6317 6476 206 53 51 chr1 54374351 54376641 -227817023 - L1ME1 LINE L1 -6 6229 3933 536 130 74 19 chr1 54376641 54376749 -227816915 - L1MB2 LINE L1 -4 6167 6054 6476 206 53 51 chr1 54376749 54377146 -227816518 - L1ME1 LINE L1 -2302 3933 3538 454 304 34 94 chr1 54377559 54377996 -227815668 + L2 LINE L2 2855 3265 -7 286 42 42 0 chr1 54378000 54378048 -227815616 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 3271 260 68 16 chr1 54378070 54379463 -227814201 - L1ME1 LINE L1 -2699 3516 35 1314 128 19 14 chr1 54380104 54380315 -227813349 - AluSg/x SINE Alu -4 308 97 361 280 37 9 chr1 54380638 54380745 -227812919 - MIR SINE MIR -39 223 114 443 306 19 13 chr1 54381029 54381186 -227812478 + MIR SINE MIR 77 234 -28 252 0 0 0 chr1 54381414 54381442 -227812222 + (T)n Simple_repeat Simple_repeat 1 28 0 400 311 18 24 chr1 54381726 54381893 -227811771 - MER5A DNA MER1_type -23 166 1 205 211 0 0 chr1 54381994 54382032 -227811632 - L3 LINE CR1 -7 1570 1533 207 0 0 0 chr1 54382348 54382371 -227811293 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 8133 25 3 0 chr1 54382374 54383844 -227809820 - L1PA3 LINE L1 -3 6152 4680 2836 22 0 0 chr1 54383844 54384168 -227809496 + L1PA3 LINE L1 4363 4686 -1460 203 259 52 0 chr1 54384288 54384346 -227809318 + MIR SINE MIR 89 149 -113 316 325 97 7 chr1 54384462 54384616 -227809048 - MIR3 SINE MIR -22 186 19 187 245 61 102 chr1 54384843 54384941 -227808723 - L2 LINE L2 -3 3269 3176 629 296 132 62 chr1 54385104 54385792 -227807872 + L2 LINE L2 2063 2826 -446 2411 182 32 22 chr1 54385792 54386254 -227807410 + MLT1C LTR MaLR 1 467 0 629 296 132 62 chr1 54386254 54386440 -227807224 + L2 LINE L2 2826 2998 -274 5399 37 0 0 chr1 54387533 54388130 -227805534 - L1PA5 LINE L1 -4 6150 5554 248 313 0 0 chr1 54388135 54388199 -227805465 + MIR SINE MIR 78 141 -67 204 67 0 0 chr1 54388202 54388232 -227805432 + (A)n Simple_repeat Simple_repeat 1 30 0 312 306 45 60 chr1 54388442 54388576 -227805088 - L2 LINE L2 -9 3263 3132 336 302 55 55 chr1 54388681 54388893 -227804771 - MIR SINE MIR -46 216 5 209 279 96 58 chr1 54388996 54389100 -227804564 + MER5A DNA MER1_type 58 165 -24 438 192 7 157 chr1 54389777 54389862 -227803802 + MIR SINE MIR 25 69 -193 2015 148 3 0 chr1 54389862 54390165 -227803499 - AluSx SINE Alu -6 306 3 438 192 7 157 chr1 54390165 54390281 -227803383 + MIR SINE MIR 69 201 -61 * 667 264 48 14 chr1 54390260 54390468 -227803196 - MIR SINE MIR -47 215 1 226 254 17 17 chr1 54390680 54390739 -227802925 + MIR SINE MIR 9 67 -195 317 169 145 24 chr1 54391127 54391210 -227802454 - L2 LINE L2 -9 3263 3171 367 214 6 6 chr1 54391247 54391420 -227802244 + (TG)n Simple_repeat Simple_repeat 2 174 0 416 225 0 11 chr1 54391435 54391617 -227802047 + (TG)n Simple_repeat Simple_repeat 1 180 0 212 214 71 0 chr1 54392274 54392330 -227801334 + L3 LINE CR1 1209 1268 -309 199 286 0 0 chr1 54393289 54393338 -227800326 + L2 LINE L2 3265 3313 0 690 237 35 12 chr1 54393554 54393723 -227799941 - MER5B DNA MER1_type -2 176 4 22 70 0 0 chr1 54393777 54393820 -227799844 + AT_rich Low_complexity Low_complexity 1 43 0 189 179 26 0 chr1 54394633 54394672 -227798992 - MIR SINE MIR 0 262 223 1990 141 3 0 chr1 54394921 54395224 -227798440 - AluSx SINE Alu 0 304 1 2027 151 49 22 chr1 54395332 54395697 -227797967 - THE1C LTR MaLR 0 375 1 2002 154 3 0 chr1 54395831 54396129 -227797535 - AluSx SINE Alu -13 299 1 190 213 43 21 chr1 54396194 54396241 -227797423 - MIR SINE MIR -58 204 157 1863 139 10 48 chr1 54396353 54396662 -227797002 + AluSq SINE Alu 1 297 -16 376 259 36 71 chr1 54396672 54396849 -227796815 - MIR SINE MIR -65 143 17 619 320 97 19 chr1 54398210 54398519 -227795145 - L2 LINE L2 -5 3308 2976 210 71 0 0 chr1 54398762 54398790 -227794874 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 817 163 17 47 chr1 54399272 54399444 -227794220 + MLT1B LTR MaLR 217 383 -7 363 215 64 47 chr1 54399575 54399747 -227793917 + L1MEd LINE L1 1024 1198 -4921 * 2627 211 78 21 chr1 54399740 54400615 -227793049 - L1ME1 LINE L1 -229 5937 5016 * 5089 161 34 10 chr1 54400611 54401836 -227791828 - L1MB1 LINE L1 0 6168 4912 215 0 67 0 chr1 54401837 54401867 -227791797 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1443 203 0 29 chr1 54401872 54402153 -227791511 - AluJo SINE Alu -32 280 8 3492 171 30 11 chr1 54402189 54402820 -227790844 + L1M1 LINE L1 19 661 -6904 641 228 31 0 chr1 54402791 54402918 -227790746 + L1M1 LINE L1 219 349 -7216 * 3465 191 60 10 chr1 54402915 54403594 -227790070 + L1M1 LINE L1 882 1594 -5971 406 252 28 59 chr1 54403594 54403850 -227789814 + LTR25 LTR ERV1 1 353 -397 277 211 0 84 chr1 54403832 54403903 -227789761 + MER61E LTR ERV1 99 163 -406 * 1452 120 42 0 chr1 54404039 54404256 -227789408 + MER61E LTR ERV1 341 566 -3 10475 132 49 6 chr1 54404261 54405928 -227787736 + L1M1 LINE L1 1591 3328 -4237 13481 26 1 1 chr1 54405928 54408205 -227785459 - L1PA4 LINE L1 0 6155 3881 21 0 0 0 chr1 54408736 54408757 -227784907 + AT_rich Low_complexity Low_complexity 1 21 0 230 250 97 28 chr1 54409855 54409927 -227783737 - MIR SINE MIR -160 102 26 227 391 14 14 chr1 54411115 54411130 -227782534 + L2 LINE L2 332 346 -2968 2292 198 12 14 chr1 54411130 54411545 -227782119 + MLT2D LTR ERVL 1 414 0 227 391 14 14 chr1 54411545 54411667 -227781997 + L2 LINE L2 345 469 -2845 189 310 78 43 chr1 54411862 54411978 -227781686 + MIR SINE MIR 143 262 0 1179 221 66 0 chr1 54412244 54412516 -227781148 - L1P LINE L1 -1006 5140 4851 1471 141 36 0 chr1 54412533 54412911 -227780753 + L1P4 LINE L1 5104 5490 -675 2030 128 10 0 chr1 54412912 54413202 -227780462 + AluSx SINE Alu 1 293 -19 334 307 26 0 chr1 54413210 54413324 -227780340 + L1MC3 LINE L1 6427 6543 -1242 4118 148 13 0 chr1 54413324 54413961 -227779703 + L1PA16 LINE L1 5476 6120 -46 3966 192 29 7 chr1 54413957 54415587 -227778077 + L1MA9 LINE L1 4104 5949 -363 * 1776 172 36 39 chr1 54415781 54416142 -227777522 + L1MA9 LINE L1 5953 6312 0 470 333 53 41 chr1 54417076 54417394 -227776270 - ERVL LTR ERVL -358 5406 5085 1831 339 59 29 chr1 54417422 54418544 -227775120 - ERVL LTR ERVL -740 5024 3869 4648 177 32 15 chr1 54418580 54419243 -227774421 - L1PB4 LINE L1 0 6156 5506 1879 126 4 4 chr1 54419243 54419513 -227774151 - AluSx SINE Alu -9 303 34 4648 177 32 15 chr1 54419513 54420345 -227773319 - L1PB4 LINE L1 -650 5506 4642 2286 71 7 3 chr1 54420356 54420652 -227773012 - AluY SINE Alu -14 297 1 23991 82 6 1 chr1 54420670 54424955 -227768709 - L1PA7 LINE L1 -4 6465 2165 227 32 32 0 chr1 54424968 54424999 -227768665 - L1PA7 LINE L1 -5299 1162 1131 4001 151 19 13 chr1 54425004 54425685 -227767979 - L1P LINE L1 -5274 1187 503 367 187 23 0 chr1 54425687 54425774 -227767890 + LOR1-int LTR ERV1 423 526 -4366 660 232 18 50 chr1 54426126 54426346 -227767318 + LOR1-int LTR ERV1 677 889 -6927 11404 148 58 47 chr1 54426430 54429057 -227764607 + LOR1-int LTR ERV1 455 3069 -5051 382 325 20 10 chr1 54429344 54429541 -227764123 - HERV15 LTR ERV1 -4415 4320 4122 504 266 0 0 chr1 54429544 54429679 -227763985 + HERVFH19I LTR ERV1 7264 7385 -334 1399 191 30 0 chr1 54429790 54430057 -227763607 + HERVFH19I LTR ERV1 7542 7816 0 346 256 12 12 chr1 54430064 54430150 -227763514 + MER51A LTR ERV1 10 95 -539 820 158 15 79 chr1 54430281 54430483 -227763181 + MER51A LTR ERV1 446 634 0 462 192 87 0 chr1 54430483 54430587 -227763077 + MER57A LTR ERV1 287 399 -4 248 305 79 79 chr1 54430624 54430801 -227762863 - L2 LINE L2 -478 2836 2660 1895 238 44 0 chr1 54430807 54431240 -227762424 + L1M4c LINE L1 18 469 -5915 * 2289 102 28 3 chr1 54431238 54431601 -227762063 + L1PA14 LINE L1 2188 2559 -5022 682 102 0 0 chr1 54431601 54431709 -227761955 + AluY SINE Alu 204 311 0 5301 234 20 8 chr1 54431741 54433461 -227760203 + L1PA14 LINE L1 2590 4323 -3261 10572 189 11 27 chr1 54433462 54436663 -227757001 + L1PA14 LINE L1 4376 7592 -7 3288 216 31 12 chr1 54436679 54437520 -227756144 - L1 LINE L1 -795 5351 4495 1892 149 72 0 chr1 54437533 54437622 -227756042 + L1MA4A LINE L1 5392 5473 -830 198 0 0 0 chr1 54437622 54437644 -227756020 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1892 149 72 0 chr1 54437644 54437916 -227755748 + L1MA4A LINE L1 5473 5779 -524 41008 32 21 1 chr1 54437918 54443950 -227749714 + L1PA2 LINE L1 1 6155 0 2202 171 73 0 chr1 54443954 54444433 -227749231 + L1MA4A LINE L1 5769 6282 -21 2168 224 38 13 chr1 54444454 54445215 -227748449 + L1MB3 LINE L1 4695 5477 -697 252 214 28 22 chr1 54445225 54445403 -227748261 + (TA)n Simple_repeat Simple_repeat 1 179 0 3183 198 18 3 chr1 54445407 54446079 -227747585 + L1MB3 LINE L1 5493 6174 -9 370 337 199 0 chr1 54446285 54446466 -227747198 + MIR SINE MIR 45 261 -1 405 357 28 8 chr1 54448022 54448271 -227745393 + MIR SINE MIR 1 254 -8 253 314 151 16 chr1 54448390 54448575 -227745089 + L3 LINE CR1 1165 1374 -203 1448 212 10 29 chr1 54449945 54450251 -227743413 - AluJb SINE Alu -12 300 1 1925 291 79 52 chr1 54450782 54451857 -227741807 - L2 LINE L2 -6 3307 2187 1775 95 22 25 chr1 54451857 54452080 -227741584 + L1PA13 LINE L1 5889 6112 -51 207 0 0 0 chr1 54452080 54452103 -227741561 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1775 95 22 25 chr1 54452103 54452153 -227741511 + L1PA13 LINE L1 6112 6161 -2 1925 291 79 52 chr1 54452153 54452346 -227741318 - L2 LINE L2 -1126 2187 2001 225 353 86 9 chr1 54452954 54453070 -227740594 - L2 LINE L2 0 3313 3189 1003 205 19 0 chr1 54453332 54453537 -227740127 + MER3 DNA MER1_type 1 209 0 411 68 0 0 chr1 54454683 54454742 -227738922 + (CA)n Simple_repeat Simple_repeat 1 59 0 1856 113 23 15 chr1 54454843 54455109 -227738555 + AluSx SINE Alu 41 308 -4 4007 61 4 0 chr1 54455239 54455749 -227737915 - L1PA7 LINE L1 -8 6146 5635 27984 119 30 63 chr1 54455751 54461461 -227732203 - L1PA7 LINE L1 -645 5527 12 236 275 8 25 chr1 54461592 54461712 -227731952 - L1MEd LINE L1 -4876 1243 1126 2195 84 3 64 chr1 54461993 54462148 -227731516 + LTR8 LTR ERV1 11 174 -517 5260 92 16 16 chr1 54462148 54462920 -227730744 + SVA Other Other 615 1386 0 2195 84 3 64 chr1 54462920 54463122 -227730542 + LTR8 LTR ERV1 174 346 -345 22 35 0 0 chr1 54463152 54463181 -227730483 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 54463630 54463653 -227730011 + AT_rich Low_complexity Low_complexity 1 23 0 3203 192 96 3 chr1 54464100 54464979 -227728685 + L1MC2 LINE L1 5140 6094 -250 1671 212 52 39 chr1 54464984 54465517 -227728147 - LTR55 LTR ERV -8 540 1 1160 139 23 64 chr1 54465517 54465783 -227727881 + L1MC2 LINE L1 6089 6343 -1 413 296 59 9 chr1 54466164 54466384 -227727280 + L1ME LINE L1 5522 5752 -418 332 261 11 0 chr1 54467126 54467214 -227726450 - MER53 DNA DNA 0 189 101 586 304 44 18 chr1 54468167 54468394 -227725270 + MIR SINE MIR 3 235 -27 259 336 86 0 chr1 54468571 54468699 -227724965 + LTR33 LTR ERVL 314 452 -69 411 300 29 41 chr1 54469215 54469328 -227724336 + ERVL LTR ERVL 4393 4506 -1258 2944 167 25 11 chr1 54469328 54469848 -227723816 - MER1A DNA MER1_type 0 527 1 411 300 29 41 chr1 54469848 54469977 -227723687 + ERVL LTR ERVL 4506 4632 -1132 432 271 15 21 chr1 54470915 54471245 -227722419 + (TA)n Simple_repeat Simple_repeat 1 328 0 681 240 99 5 chr1 54471286 54471478 -227722186 + MER2 DNA MER2_type 1 210 -135 408 125 0 38 chr1 54471516 54471596 -227722068 - L1PA15 LINE L1 0 6165 6089 2949 215 111 5 chr1 54471596 54472696 -227720968 + L1ME2 LINE L1 4948 6164 0 185 265 20 0 chr1 54473147 54473196 -227720468 - L2 LINE L2 0 3313 3264 2053 276 46 19 chr1 54473227 54474136 -227719528 + L1M4 LINE L1 3120 4053 -2093 3357 182 22 17 chr1 54474141 54474779 -227718885 - MER50 LTR ERV1 -93 641 1 6187 159 6 7 chr1 54474779 54475795 -227717869 - MER50-int LTR ERV1 -8 7197 6183 3164 159 22 23 chr1 54475785 54476676 -227716988 - MER50-int LTR ERV1 -804 4076 3384 * 2810 159 6 10 chr1 54476681 54477160 -227716504 - MER50-int LTR ERV1 -3399 1481 1005 9670 156 42 26 chr1 54477197 54478931 -227714733 - MER50-int LTR ERV1 -5444 1761 1 1905 201 36 5 chr1 54478932 54479316 -227714348 - MER50 LTR ERV1 -23 711 316 402 171 0 13 chr1 54479339 54479415 -227714249 - MER50 LTR ERV1 -599 135 61 322 230 23 0 chr1 54479416 54479503 -227714161 + L1P LINE L1 5004 5092 -1054 417 20 0 0 chr1 54479503 54479553 -227714111 + (TCTCCC)n Simple_repeat Simple_repeat 1 50 0 5601 66 41 53 chr1 54479558 54480395 -227713269 + SVA Other Other 38 864 -522 3317 92 23 68 chr1 54480455 54481099 -227712565 + SVA Other Other 433 1047 -339 463 226 43 92 chr1 54481100 54481116 -227712548 + L1M4 LINE L1 4156 4171 -1975 5838 107 23 16 chr1 54481116 54482194 -227711470 + L1PA14 LINE L1 5073 6161 0 463 226 43 92 chr1 54482194 54482341 -227711323 + L1M4 LINE L1 4171 4311 -1835 243 161 18 0 chr1 54482343 54482399 -227711265 + L1MD3 LINE L1 7926 7982 -13 22 0 0 0 chr1 54482575 54482597 -227711067 + AT_rich Low_complexity Low_complexity 1 22 0 690 249 53 6 chr1 54482706 54482875 -227710789 - MER5A DNA MER1_type -6 183 7 1015 217 126 136 chr1 54483477 54483849 -227709815 + MER34 LTR ERV1 1 353 -212 1164 162 210 104 chr1 54483849 54484004 -227709660 + LTR29 LTR ERV1 1 138 -484 933 81 0 22 chr1 54484004 54484140 -227709524 - FLAM_C SINE Alu 0 133 1 1164 162 210 104 chr1 54484140 54484522 -227709142 + LTR29 LTR ERV1 138 595 -27 1867 136 23 45 chr1 54484616 54484925 -227708739 + AluSx SINE Alu 9 310 -2 465 194 41 0 chr1 54484926 54485024 -227708640 + MER34 LTR ERV1 441 542 0 2454 116 18 66 chr1 54485368 54485512 -227708152 - LTR23 LTR ERV1 0 437 288 2007 132 0 20 chr1 54485512 54485830 -227707834 - AluSx SINE Alu 0 312 3 2454 116 18 66 chr1 54485830 54485841 -227707823 - LTR23 LTR ERV1 -149 288 278 1949 176 0 0 chr1 54485841 54486147 -227707517 - AluJb SINE Alu -6 306 1 2454 116 18 66 chr1 54486147 54486446 -227707218 - LTR23 LTR ERV1 -159 278 4 313 238 109 10 chr1 54486510 54486527 -227707137 - L2 LINE L2 -3 3310 3296 3351 158 88 45 chr1 54486527 54487224 -227706440 - LTR8A LTR ERV1 0 727 1 313 238 109 10 chr1 54487224 54487307 -227706357 - L2 LINE L2 -17 3296 3200 419 308 76 67 chr1 54487356 54487671 -227705993 - L2 LINE L2 -341 2973 2656 214 312 190 36 chr1 54488265 54488512 -227705152 - L3 LINE CR1 -717 860 576 193 337 124 15 chr1 54488732 54488934 -227704730 - L3 LINE CR1 -1216 361 138 215 333 67 15 chr1 54489190 54489325 -227704339 + L2 LINE L2 2942 3083 -189 205 272 257 29 chr1 54489409 54489545 -227704119 + MIR3 SINE MIR 96 262 0 832 199 29 0 chr1 54489772 54489943 -227703721 - MER3 DNA MER1_type -80 129 1 301 306 56 37 chr1 54490454 54490614 -227703050 - MIR SINE MIR -41 167 15 765 232 61 0 chr1 54491709 54491873 -227701791 - MER5A DNA MER1_type 0 189 16 420 275 25 17 chr1 54492143 54492263 -227701401 + MIR3 SINE MIR 5 125 -83 204 277 145 0 chr1 54492538 54492621 -227701043 + L2 LINE L2 3174 3268 -4 210 353 66 16 chr1 54492661 54492783 -227700881 + MIR3 SINE MIR 1 128 -80 835 296 194 2 chr1 54492868 54493297 -227700367 + MLT1J LTR MaLR 1 511 0 244 350 86 14 chr1 54493392 54493532 -227700132 - L2 LINE L2 0 3272 3123 347 296 89 41 chr1 54493998 54494167 -227699497 - MIR SINE MIR -7 255 79 189 276 35 35 chr1 54494296 54494354 -227699310 - MIR SINE MIR -64 144 87 1683 159 10 0 chr1 54494593 54494882 -227698782 - L1MA9 LINE L1 0 6312 6021 234 231 55 66 chr1 54495658 54495749 -227697915 - MER91C DNA MER1_type -31 109 20 184 232 89 18 chr1 54495739 54495795 -227697869 + L2 LINE L2 3213 3272 0 * 2337 192 48 67 chr1 54496008 54496632 -227697032 - LTR9 LTR ERV1 0 612 1 2813 83 95 5 chr1 54496794 54497205 -227696459 - LTR7 LTR ERV1 -2 448 1 2286 85 51 16 chr1 54497205 54497580 -227696084 - HERVH LTR ERV1 0 7713 7326 1355 115 23 9 chr1 54497582 54497799 -227695865 - HERVH LTR ERV1 -1894 5819 5600 4165 140 1 5 chr1 54497800 54498464 -227695200 - HERVH LTR ERV1 -2564 5149 4488 3372 95 4 6 chr1 54498466 54498969 -227694695 - HERVH LTR ERV1 -3720 3993 3492 779 158 20 0 chr1 54498961 54499107 -227694557 - HERVH LTR ERV1 -4425 3288 3140 * 15368 103 14 29 chr1 54499101 54502202 -227691462 - HERVH LTR ERV1 -4726 2987 1 2754 88 98 5 chr1 54502204 54502614 -227691050 - LTR7 LTR ERV1 -2 448 1 188 196 118 0 chr1 54502618 54502669 -227690995 + MIR SINE MIR 117 173 -89 201 271 201 42 chr1 54503419 54503563 -227690101 - L2 LINE L2 -17 3255 3089 1342 178 41 4 chr1 54505504 54505773 -227687891 - L1MB3 LINE L1 -4 6179 5901 336 115 19 0 chr1 54505862 54505914 -227687750 + MLT1B LTR MaLR 327 379 -11 3051 208 22 5 chr1 54506066 54507232 -227686432 - L1MB3 LINE L1 -302 5881 4696 1719 190 19 43 chr1 54508320 54508694 -227684970 - MLT1A1 LTR MaLR 0 365 1 378 278 0 28 chr1 54509629 54509737 -227683927 - MIR SINE MIR -71 137 33 196 353 50 86 chr1 54509821 54509960 -227683704 + MIR SINE MIR 16 149 -59 259 312 54 0 chr1 54510118 54510211 -227683453 + MIR3 SINE MIR 104 201 -7 188 108 0 27 chr1 54510220 54510257 -227683407 + (TCC)n Simple_repeat Simple_repeat 2 37 0 225 261 0 0 chr1 54510275 54510321 -227683343 + (TG)n Simple_repeat Simple_repeat 1 46 0 373 245 147 49 chr1 54510792 54510976 -227682688 - MIR3 SINE MIR -2 206 5 213 316 138 18 chr1 54511207 54511407 -227682257 + MIR SINE MIR 36 261 -1 469 258 117 6 chr1 54511430 54511593 -227682071 + MIR SINE MIR 22 202 -60 303 255 59 44 chr1 54511628 54511798 -227681866 + MIR SINE MIR 72 242 -20 393 340 41 66 chr1 54512785 54513056 -227680608 - L2 LINE L2 -13 3259 2996 420 313 6 0 chr1 54513420 54513596 -227680068 + (CA)n Simple_repeat Simple_repeat 1 177 0 262 310 0 23 chr1 54513518 54513692 -227679972 + (CTCA)n Simple_repeat Simple_repeat 4 173 0 * 241 265 0 13 chr1 54514733 54514884 -227678780 + (TG)n Simple_repeat Simple_repeat 1 149 0 628 194 0 22 chr1 54514900 54515475 -227678189 + (TG)n Simple_repeat Simple_repeat 1 562 0 225 303 0 0 chr1 54515645 54515711 -227677953 - MIR SINE MIR -61 147 82 707 189 88 0 chr1 54515904 54516052 -227677612 + MIR SINE MIR 33 193 -69 432 302 117 11 chr1 54516383 54516562 -227677102 + MIR SINE MIR 59 256 -6 376 289 94 31 chr1 54516885 54517013 -227676651 - MIR3 SINE MIR -65 143 8 459 323 98 0 chr1 54517549 54517713 -227675951 - MIR3 SINE MIR -14 194 15 181 383 12 0 chr1 54518190 54518271 -227675393 + L2 LINE L2 2724 2805 -509 214 241 0 0 chr1 54518548 54518602 -227675062 + GA-rich Low_complexity Low_complexity 2 55 0 191 153 35 47 chr1 54518629 54518714 -227674950 + (CAGAGA)n Simple_repeat Simple_repeat 2 85 0 878 166 55 70 chr1 54520410 54520609 -227673055 + AluJb SINE Alu 115 310 -2 574 168 38 28 chr1 54520623 54520873 -227672791 + GA-rich Low_complexity Low_complexity 1 252 0 2446 105 0 0 chr1 54520873 54521179 -227672485 + AluSg SINE Alu 1 306 -4 312 321 171 28 chr1 54521700 54522490 -227671174 - L2 LINE L2 -7 3265 2369 313 338 19 38 chr1 54522893 54523050 -227670614 - MIR3 SINE MIR -32 176 23 466 241 8 85 chr1 54523187 54523358 -227670306 - MIR3 SINE MIR -18 190 29 235 266 177 16 chr1 54523742 54523866 -227669798 + MIR3 SINE MIR 5 148 -60 207 202 191 48 chr1 54525674 54525758 -227667906 + MIR SINE MIR 35 130 -78 613 257 181 36 chr1 54525782 54526085 -227667579 - L2 LINE L2 0 3272 2926 207 250 0 0 chr1 54526086 54526138 -227667526 + MIR3 SINE MIR 153 204 -4 193 236 91 18 chr1 54526883 54526938 -227666726 - MIR SINE MIR -195 67 9 435 272 118 85 chr1 54527498 54527770 -227665894 - L2 LINE L2 0 3272 2992 1961 169 67 3 chr1 54527888 54528244 -227665420 - MLT1B LTR MaLR -11 379 1 671 365 51 23 chr1 54528499 54529071 -227664593 + L2 LINE L2 1706 2293 -1021 351 78 0 0 chr1 54529495 54529546 -227664118 + (TC)n Simple_repeat Simple_repeat 2 52 0 262 266 76 0 chr1 54529970 54530049 -227663615 + L2 LINE L2 3155 3239 -33 819 97 0 0 chr1 54531421 54531534 -227662130 + L1PA15 LINE L1 6053 6165 0 216 0 0 0 chr1 54531546 54531570 -227662094 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 454 73 81 0 chr1 54532504 54532640 -227661024 + (TA)n Simple_repeat Simple_repeat 1 147 0 232 217 0 0 chr1 54532655 54532715 -227660949 + L1MC4 LINE L1 6659 6718 -1324 180 0 0 0 chr1 54532870 54532890 -227660774 + (TA)n Simple_repeat Simple_repeat 1 20 0 1927 146 4 0 chr1 54533477 54533757 -227659907 + AluJb SINE Alu 6 286 -26 44 20 0 0 chr1 54533757 54533808 -227659856 + AT_rich Low_complexity Low_complexity 1 51 0 419 292 26 0 chr1 54534071 54534184 -227659480 + MIR3 SINE MIR 81 196 -12 24 32 0 0 chr1 54534272 54534303 -227659361 + AT_rich Low_complexity Low_complexity 1 31 0 406 278 37 22 chr1 54534532 54534708 -227658956 - MIR SINE MIR -70 192 20 211 241 25 25 chr1 54535032 54535111 -227658553 + CT-rich Low_complexity Low_complexity 3 81 0 270 336 17 9 chr1 54535434 54535550 -227658114 - MIR3 SINE MIR -10 198 82 243 313 218 9 chr1 54536221 54536432 -227657232 + L2 LINE L2 3014 3268 -4 260 261 14 0 chr1 54537232 54537301 -227656363 + L2 LINE L2 2966 3035 -237 208 308 51 13 chr1 54537483 54537561 -227656103 + L2 LINE L2 3192 3272 0 579 304 26 16 chr1 54537707 54537901 -227655763 - MER91A DNA MER1_type 0 196 1 322 367 86 0 chr1 54537984 54538123 -227655541 + L2 LINE L2 2596 2746 -568 843 300 8 28 chr1 54538238 54538491 -227655173 + MIR SINE MIR 13 260 -2 2299 149 12 9 chr1 54538492 54538834 -227654830 + MER61A LTR ERV1 1 343 0 1288 269 76 9 chr1 54539266 54539715 -227653949 + LTR16C LTR ERVL 5 483 -8 181 195 49 0 chr1 54539879 54539920 -227653744 - L2 LINE L2 -296 2976 2934 204 323 0 16 chr1 54540137 54540199 -227653465 + MIR3 SINE MIR 5 65 -143 376 299 0 9 chr1 54540262 54540369 -227653295 - MIR3 SINE MIR -20 188 83 321 297 109 84 chr1 54540607 54540954 -227652710 + L2 LINE L2 2917 3272 0 232 311 94 94 chr1 54541693 54541873 -227651791 + MIR3 SINE MIR 23 202 -6 488 260 30 112 chr1 54542629 54542898 -227650766 - L3 LINE CR1 -2 1575 1329 192 272 272 39 chr1 54543137 54543240 -227650424 - MIR3 SINE MIR -75 133 7 1440 28 0 0 chr1 54543863 54544304 -227649360 + L1PA13 LINE L1 5702 6152 -11 1480 179 44 91 chr1 54543895 54543969 -227649695 + L1MB4 LINE L1 5748 5824 -356 1440 142 14 0 chr1 54543969 54544187 -227649477 + L1PA13 LINE L1 5932 6152 -11 1480 179 44 91 chr1 54544187 54544565 -227649099 + L1MB4 LINE L1 5824 6179 -1 316 270 106 10 chr1 54544697 54544894 -227648770 + HAL1b LINE L1 746 2349 -158 313 344 106 54 chr1 54545227 54545558 -227648106 - L2 LINE L2 -718 2596 2249 1066 274 105 6 chr1 54545825 54546186 -227647478 + LTR16A LTR ERVL 26 422 -28 475 238 19 0 chr1 54547090 54547195 -227646469 - MIR SINE MIR 0 262 156 331 322 62 14 chr1 54547260 54547406 -227646258 - MIR SINE MIR -109 153 1 361 278 87 32 chr1 54547922 54548048 -227645616 + L2 LINE L2 3139 3271 -1 576 84 53 0 chr1 54548967 54549062 -227644602 + L1MA9 LINE L1 6213 6312 0 322 219 119 33 chr1 54550299 54550450 -227643214 + L1ME4a LINE L1 5712 5875 -246 22 56 0 0 chr1 54551070 54551106 -227642558 + AT_rich Low_complexity Low_complexity 1 36 0 1305 158 0 10 chr1 54551611 54551838 -227641826 - AluJo SINE Alu 0 308 84 5062 62 3 0 chr1 54552165 54552761 -227640903 - L1PA7 LINE L1 -3 6151 5554 181 0 33 33 chr1 54553042 54553072 -227640592 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 25 0 0 0 chr1 54553304 54553329 -227640335 + AT_rich Low_complexity Low_complexity 1 25 0 301 252 218 27 chr1 54553452 54553599 -227640065 - MER5B DNA MER1_type -3 175 1 210 298 75 63 chr1 54554145 54554311 -227639353 + MIR SINE MIR 49 216 -46 256 203 0 72 chr1 54554870 54554900 -227638764 - MIR SINE MIR 0 262 231 4067 150 23 88 chr1 54554900 54555545 -227638119 - LTR1 LTR ERV1 0 785 206 2524 50 27 0 chr1 54555545 54555843 -227637821 - AluY SINE Alu -5 306 1 4067 150 23 88 chr1 54555843 54556037 -227637627 - LTR1 LTR ERV1 -579 206 1 256 203 0 72 chr1 54556037 54556075 -227637589 - MIR SINE MIR -31 231 199 336 24 0 0 chr1 54556097 54556138 -227637526 + (TG)n Simple_repeat Simple_repeat 2 42 0 227 345 109 9 chr1 54557058 54557168 -227636496 - MIR SINE MIR -19 243 123 186 293 30 20 chr1 54557361 54557460 -227636204 - MIR SINE MIR -59 203 104 225 209 39 31 chr1 54557508 54557637 -227636027 + (TA)n Simple_repeat Simple_repeat 2 131 0 356 311 71 31 chr1 54558269 54558465 -227635199 + MIR SINE MIR 53 256 -6 4392 135 26 9 chr1 54559837 54560572 -227633092 - L1MA9 LINE L1 -7 6305 5559 1720 172 72 11 chr1 54560577 54561141 -227632523 - L1MA9 LINE L1 -744 5402 4912 20386 109 19 10 chr1 54561141 54564930 -227628734 - L1PA7 LINE L1 -5 6464 2649 322 140 0 0 chr1 54564930 54564980 -227628684 - L1PA7 LINE L1 -4239 2222 2173 44781 43 1 1 chr1 54564987 54571139 -227622525 + L1PA3 LINE L1 7 6155 0 23 0 0 0 chr1 54571139 54571162 -227622502 + AT_rich Low_complexity Low_complexity 1 23 0 2326 107 0 3 chr1 54571190 54571500 -227622164 + AluSc SINE Alu 1 309 0 12651 108 8 14 chr1 54571512 54573693 -227619971 - L1PA7 LINE L1 -4288 2173 1 3539 187 46 13 chr1 54573694 54574460 -227619204 - L1 LINE L1 -1225 5881 5091 2273 149 33 35 chr1 54574471 54574545 -227619119 - MSTA LTR MaLR 0 428 355 2171 110 7 10 chr1 54574545 54574846 -227618818 + AluSq SINE Alu 1 300 -13 2273 149 33 35 chr1 54574846 54575200 -227618464 - MSTA LTR MaLR -73 355 1 2488 146 37 15 chr1 54575201 54575611 -227618053 + MSTB LTR MaLR 8 426 0 2410 205 34 4 chr1 54575611 54576148 -227617516 - L1 LINE L1 -2011 5095 4543 20141 92 4 6 chr1 54576162 54578953 -227614711 + L1P LINE L1 12 2797 -3349 2660 120 15 35 chr1 54578999 54579688 -227613976 - L1PBa LINE L1 -5708 1155 1 929 218 39 32 chr1 54579692 54580011 -227613653 - L1 LINE L1 -4853 2184 1850 413 313 47 27 chr1 54580914 54581064 -227612600 - L1 LINE L1 -5721 1316 1164 374 294 49 14 chr1 54581184 54581327 -227612337 - L1 LINE L1 -5797 1230 1083 1898 145 0 0 chr1 54581904 54582173 -227611491 - AluSx SINE Alu -43 269 1 3244 145 53 3 chr1 54582940 54583540 -227610124 + L1MB7 LINE L1 5548 6177 -7 298 298 145 40 chr1 54583657 54583781 -227609883 - MIR3 SINE MIR -1 207 71 207 319 0 14 chr1 54584687 54584756 -227608908 - L2 LINE L2 -5 3308 3241 227 333 77 0 chr1 54584812 54584890 -227608774 - MER94 DNA DNA -4 130 47 393 22 0 0 chr1 54584921 54584967 -227608697 + (TG)n Simple_repeat Simple_repeat 2 47 0 289 296 122 17 chr1 54585074 54585189 -227608475 - MIR3 SINE MIR -49 159 33 234 318 100 9 chr1 54586756 54586866 -227606798 - L2 LINE L2 -14 3299 3180 2197 109 3 3 chr1 54587031 54587335 -227606329 + AluSp SINE Alu 6 309 -4 381 304 0 10 chr1 54587350 54587452 -227606212 + MIR SINE MIR 37 137 -125 339 267 133 25 chr1 54587563 54587683 -227605981 - MIR SINE MIR -128 134 2 7933 163 45 18 chr1 54588127 54589775 -227603889 + L1 LINE L1 3403 5094 -1052 374 160 84 37 chr1 54589785 54589907 -227603757 - L1M4 LINE L1 -5410 1445 1322 1263 137 22 70 chr1 54590010 54590280 -227603384 - L1PB4 LINE L1 -3 6153 5897 644 308 65 18 chr1 54590310 54590589 -227603075 - L1M4 LINE L1 -5667 1188 897 730 193 77 89 chr1 54590817 54590932 -227602732 - L1M4 LINE L1 -6593 266 151 3807 123 31 8 chr1 54590932 54591577 -227602087 - L1MA4 LINE L1 -6 6294 5635 730 193 77 89 chr1 54591577 54591720 -227601944 - L1M4 LINE L1 -6708 151 11 783 159 0 15 chr1 54592305 54592437 -227601227 - FLAM_C SINE Alu -13 130 1 24 53 0 0 chr1 54593290 54593328 -227600336 + AT_rich Low_complexity Low_complexity 1 38 0 375 232 130 32 chr1 54594628 54594874 -227598790 - L1MCa LINE L1 -3689 2955 2686 246 182 0 0 chr1 54595141 54595207 -227598457 + (TA)n Simple_repeat Simple_repeat 1 66 0 307 239 43 0 chr1 54595341 54595433 -227598231 - L1MCa LINE L1 -5434 1108 1013 348 196 0 62 chr1 54595564 54595661 -227598003 + L1MA9 LINE L1 6182 6272 -40 222 243 14 14 chr1 54597102 54597172 -227596492 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 336 358 71 56 chr1 54597657 54598065 -227595599 + LTR16B LTR ERVL 51 464 0 2369 65 33 4 chr1 54598293 54598666 -227594998 + MER11A LTR ERVK 1 477 -789 311 233 12 0 chr1 54598766 54598852 -227594812 + L1MA9 LINE L1 5703 5789 -502 183 205 0 0 chr1 54598900 54598939 -227594725 + (TG)n Simple_repeat Simple_repeat 2 40 0 1442 234 23 71 chr1 54598944 54599462 -227594202 + L1MA9 LINE L1 5782 6274 -38 273 227 0 0 chr1 54599644 54599710 -227593954 + (TA)n Simple_repeat Simple_repeat 1 66 0 340 228 43 0 chr1 54599843 54599935 -227593729 - L1MCa LINE L1 -5434 1108 1013 1529 252 77 33 chr1 54599939 54601181 -227592483 - L1M4c LINE L1 -3542 3102 1707 915 218 0 0 chr1 54601190 54601355 -227592309 - FRAM SINE Alu -20 156 1 1683 224 74 60 chr1 54601372 54602783 -227590881 - L1M4c LINE L1 -4848 1694 152 274 314 12 0 chr1 54602787 54602873 -227590791 - L1MCa LINE L1 -6024 620 534 338 113 0 19 chr1 54602876 54602929 -227590735 - MLT2D LTR ERVL 0 414 363 2107 249 62 27 chr1 54602952 54603867 -227589797 + L1M4 LINE L1 2558 3504 -2642 41651 53 9 1 chr1 54603884 54609985 -227583679 + L1PA4 LINE L1 7 6154 -1 5875 224 57 14 chr1 54609976 54611720 -227581944 + L1M4 LINE L1 3492 5310 -836 * 1010 306 47 46 chr1 54611708 54612310 -227581354 + L1PB4 LINE L1 21 1155 -6430 * 8507 171 38 28 chr1 54612410 54613531 -227580133 + L1PB4 LINE L1 2508 3616 -3968 200 33 0 33 chr1 54613531 54613561 -227580103 + (CAA)n Simple_repeat Simple_repeat 2 30 0 8507 171 38 28 chr1 54613561 54614518 -227579146 + L1PB4 LINE L1 3616 4562 -3022 6835 66 3 1 chr1 54614518 54615871 -227577793 + L1PA7 LINE L1 4797 6151 -3 8507 171 38 28 chr1 54615871 54616251 -227577413 + L1PB4 LINE L1 4562 4937 -2647 1795 163 0 27 chr1 54616251 54616546 -227577118 - AluJb SINE Alu -20 292 6 8507 171 38 28 chr1 54616546 54617273 -227576391 + L1PB4 LINE L1 4937 5713 -1871 4069 191 44 24 chr1 54618469 54620266 -227573398 + L1PB4 LINE L1 5743 7580 -14 1667 215 107 33 chr1 54620262 54621077 -227572587 + L1MB7 LINE L1 5260 6183 -1 * 971 249 91 13 chr1 54621286 54621672 -227571992 + L1ME3A LINE L1 2676 3091 -3055 458 291 51 57 chr1 54621887 54622238 -227571426 + L1PA15 LINE L1 7 355 -7226 17631 197 19 11 chr1 54623288 54625294 -227568370 + L1PA15 LINE L1 2319 4307 -3296 1755 229 56 81 chr1 54625294 54625862 -227567802 + MLT2B3 LTR ERVL 1 554 0 17631 197 19 11 chr1 54625862 54629084 -227564580 + L1PA15 LINE L1 4307 7590 -13 1826 280 133 21 chr1 54629099 54630459 -227563205 + L1ME3A LINE L1 3332 4844 -1302 439 276 75 49 chr1 54631803 54632543 -227561121 + L1MDa LINE L1 1233 1991 -4549 207 0 0 0 chr1 54632543 54632566 -227561098 + (A)n Simple_repeat Simple_repeat 1 23 0 596 260 48 12 chr1 54633055 54633305 -227560359 + L1MDa LINE L1 2625 2883 -3657 568 291 89 26 chr1 54633296 54633354 -227560310 + L1ME3A LINE L1 5420 5473 -697 * 195 42 0 0 chr1 54633354 54633378 -227560286 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 568 291 89 26 chr1 54633378 54633537 -227560127 + L1ME3A LINE L1 5473 5667 -503 3792 179 39 8 chr1 54633537 54634248 -227559416 + MER44D DNA MER2_type 1 605 0 568 291 89 26 chr1 54634248 54634322 -227559342 + L1ME3A LINE L1 5667 5735 -435 743 293 42 9 chr1 54634368 54634580 -227559084 - MER58A DNA MER1_type 0 224 6 672 246 183 4 chr1 54634585 54634662 -227559002 + L1ME3A LINE L1 5802 5864 -306 2006 103 0 4 chr1 54634662 54634933 -227558731 + AluY SINE Alu 35 304 -7 672 246 183 4 chr1 54634933 54635123 -227558541 + L1ME3A LINE L1 5864 6117 -53 584 186 76 91 chr1 54635446 54635709 -227557955 + L1MC5 LINE L1 6778 7036 -925 313 189 54 101 chr1 54635915 54636063 -227557601 + L1MC5 LINE L1 7305 7445 -516 357 285 132 0 chr1 54636239 54636474 -227557190 + L1MEc LINE L1 2146 2411 -3985 15168 178 33 10 chr1 54636489 54636503 -227557161 + L1P LINE L1 1909 1921 -4225 749 131 0 0 chr1 54636503 54636610 -227557054 + U6 snRNA snRNA 1 107 0 15168 178 33 10 chr1 54636610 54639697 -227553967 + L1P LINE L1 1921 5082 -1064 412 107 71 0 chr1 54639698 54639810 -227553854 + (TA)n Simple_repeat Simple_repeat 1 120 0 38 68 0 0 chr1 54639813 54639886 -227553778 + AT_rich Low_complexity Low_complexity 1 73 0 927 207 74 118 chr1 54639981 54640439 -227553225 + LTR8A LTR ERV1 290 727 0 317 185 0 120 chr1 54640470 54640562 -227553102 - MLT1F1 LTR MaLR -442 125 45 2304 239 41 35 chr1 54640583 54641321 -227552343 - L1MD3 LINE L1 -887 7108 6367 978 216 56 26 chr1 54641354 54641622 -227552042 + MER58B DNA MER1_type 66 341 0 4654 222 129 30 chr1 54641622 54644286 -227549378 - L1MC3 LINE L1 -747 5399 3425 2094 124 48 25 chr1 54644286 54644642 -227549022 - THE1B LTR MaLR 0 364 1 4654 222 129 30 chr1 54644642 54644684 -227548980 - L1MC3 LINE L1 -2721 3425 3389 636 270 129 51 chr1 54644758 54645407 -227548257 + L1ME3A LINE L1 1081 1780 -4616 790 216 195 0 chr1 54645729 54646021 -227547643 + L1ME3A LINE L1 2271 2619 -3596 1555 220 101 75 chr1 54646027 54647230 -227546434 + L1ME3A LINE L1 5018 6234 -5 22 88 0 0 chr1 54648672 54648729 -227544935 + AT_rich Low_complexity Low_complexity 1 57 0 2134 88 32 0 chr1 54648801 54649084 -227544580 - AluSg SINE Alu -5 305 14 28 0 0 0 chr1 54649533 54649561 -227544103 + AT_rich Low_complexity Low_complexity 1 28 0 60 64 0 0 chr1 54650618 54650727 -227542937 + AT_rich Low_complexity Low_complexity 1 109 0 233 106 0 21 chr1 54652079 54652126 -227541538 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 2211 286 160 32 chr1 54652571 54653803 -227539861 - L2 LINE L2 -121 3192 1807 388 206 196 0 chr1 54653802 54653904 -227539760 - L2 LINE L2 -4 3309 3188 * 249 323 40 20 chr1 54653905 54654004 -227539660 + MIR SINE MIR 69 169 -93 1059 168 0 0 chr1 54654411 54654578 -227539086 + FRAM SINE Alu 10 176 0 308 345 125 2 chr1 54655656 54655845 -227537819 + MIR SINE MIR 18 232 -30 21 0 0 0 chr1 54656077 54656098 -227537566 + AT_rich Low_complexity Low_complexity 1 21 0 43440 44 5 1 chr1 54656098 54662224 -227531440 - L1PA3 LINE L1 -3 6152 1 187 159 23 23 chr1 54662451 54662495 -227531169 - L2 LINE L2 0 3313 3270 390 252 8 55 chr1 54662933 54663060 -227530604 - MIR SINE MIR -41 221 101 547 252 124 45 chr1 54663224 54663565 -227530099 + L1M4 LINE L1 3587 3969 -2177 423 0 0 0 chr1 54663565 54663612 -227530052 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 547 252 124 45 chr1 54663612 54663690 -227529974 + L1M4 LINE L1 3969 4039 -2107 2560 110 3 0 chr1 54663996 54664350 -227529314 - THE1A LTR MaLR 0 355 1 11445 89 21 1 chr1 54664350 54665898 -227527766 - THE1A-int LTR MaLR 0 1580 1 2431 104 23 0 chr1 54665898 54666245 -227527419 - THE1A LTR MaLR 0 355 1 235 292 104 0 chr1 54666275 54666371 -227527293 - MLT1J1 LTR MaLR -287 159 54 375 298 54 44 chr1 54666513 54666718 -227526946 + L1M4 LINE L1 4273 4479 -1667 227 192 14 110 chr1 54666814 54666887 -227526777 + MER110A LTR ERV1 105 170 -298 788 242 78 7 chr1 54667008 54667277 -227526387 + MER110 LTR ERV1 172 459 -32 22 0 0 0 chr1 54668150 54668172 -227525492 + AT_rich Low_complexity Low_complexity 1 22 0 1944 159 19 3 chr1 54668958 54669279 -227524385 - MER7A DNA MER2_type -5 341 18 573 356 50 24 chr1 54669326 54669745 -227523919 + L2 LINE L2 2527 2956 -358 246 321 44 38 chr1 54669864 54670023 -227523641 + L2 LINE L2 3120 3279 -34 263 291 74 57 chr1 54670109 54670284 -227523380 + MLT1I LTR MaLR 37 214 -195 256 365 15 15 chr1 54670327 54670464 -227523200 + MLT1J2 LTR MaLR 303 439 -11 2658 99 0 0 chr1 54670734 54671089 -227522575 - THE1A LTR MaLR 0 355 1 2086 144 9 57 chr1 54671117 54671328 -227522336 + L1MA7 LINE L1 5728 5911 -380 1849 120 68 55 chr1 54671328 54671695 -227521969 - THE1C LTR MaLR -3 372 1 2086 144 9 57 chr1 54671695 54671907 -227521757 + L1MA7 LINE L1 5911 6131 -160 286 244 37 0 chr1 54671960 54672042 -227521622 + MER113 DNA MER1_type? 2 86 -435 683 142 122 0 chr1 54672225 54672373 -227521291 + L1MA9 LINE L1 6147 6312 0 207 361 46 19 chr1 54672931 54673039 -227520625 - L2 LINE L2 -26 3287 3177 2170 124 11 40 chr1 54673174 54673521 -227520143 - MER1B DNA MER1_type 0 337 1 242 345 12 12 chr1 54673615 54673699 -227519965 - MER5A DNA MER1_type -22 167 84 222 214 0 0 chr1 54673937 54673993 -227519671 + T-rich Low_complexity Low_complexity 1 56 0 6690 60 14 61 chr1 54673999 54675701 -227517963 - SVA Other Other -683 1380 38 294 50 0 0 chr1 54675709 54675749 -227517915 + (GGGAGA)n Simple_repeat Simple_repeat 3 42 0 368 110 0 14 chr1 54675852 54675925 -227517739 + (GGGAGA)n Simple_repeat Simple_repeat 4 75 0 1016 218 172 27 chr1 54676091 54676499 -227517165 - MER113 DNA MER1_type? -48 473 7 358 271 119 0 chr1 54677349 54677467 -227516197 + MIR SINE MIR 88 219 -43 280 335 43 58 chr1 54677540 54677728 -227515936 + MIR SINE MIR 50 234 -28 11620 220 30 29 chr1 54677912 54678446 -227515218 + L1M2 LINE L1 8 540 -6309 2257 115 48 28 chr1 54678446 54678803 -227514861 - THE1B LTR MaLR 0 364 1 11620 220 30 29 chr1 54678803 54680210 -227513454 + L1M2 LINE L1 540 1945 -4904 989 165 0 0 chr1 54680210 54680368 -227513296 - FRAM SINE Alu -5 161 4 11620 220 30 29 chr1 54680368 54680381 -227513283 + L1M2 LINE L1 1945 1956 -4893 1625 122 157 0 chr1 54680381 54680643 -227513021 - AluSq SINE Alu 0 303 1 11620 220 30 29 chr1 54680643 54681532 -227512132 + L1M2 LINE L1 1956 2855 -3994 3300 153 54 13 chr1 54681532 54682203 -227511461 + L1MA4A LINE L1 5595 6292 -11 1665 163 7 40 chr1 54682583 54682884 -227510780 + AluJb SINE Alu 3 293 -19 23 0 0 0 chr1 54683273 54683296 -227510368 + AT_rich Low_complexity Low_complexity 1 23 0 217 300 0 17 chr1 54683422 54683482 -227510182 + MIR SINE MIR 83 141 -67 23 0 0 0 chr1 54683994 54684017 -227509647 + AT_rich Low_complexity Low_complexity 1 23 0 187 247 27 82 chr1 54684046 54684119 -227509545 + MIR3 SINE MIR 11 79 -129 2427 214 92 5 chr1 54684463 54685112 -227508552 + L1MC4 LINE L1 7095 7800 -242 1630 209 16 22 chr1 54685134 54685503 -227508161 - MLT1A2 LTR MaLR -4 370 4 418 192 62 48 chr1 54685560 54685684 -227507980 + L1MC4 LINE L1 7904 8042 0 4070 158 45 74 chr1 54687371 54688449 -227505215 + L1MB3 LINE L1 5146 6183 0 1782 173 56 6 chr1 54688477 54688871 -227504793 + L1MB5 LINE L1 5761 6180 0 25 0 0 0 chr1 54690448 54690473 -227503191 + AT_rich Low_complexity Low_complexity 1 25 0 182 267 0 0 chr1 54692413 54692458 -227501206 - MIR3 SINE MIR 0 208 164 254 288 176 75 chr1 54692987 54693373 -227500291 + MLT1H LTR MaLR 125 549 0 187 250 104 0 chr1 54693476 54693524 -227500140 - MIR SINE MIR -48 214 162 231 36 0 0 chr1 54693641 54693669 -227499995 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 361 192 0 14 chr1 54693764 54693837 -227499827 + L1ME3A LINE L1 6099 6170 0 1444 182 62 28 chr1 54694395 54694686 -227498978 + AluJo SINE Alu 1 301 -1 23 33 0 0 chr1 54695654 54695684 -227497980 + AT_rich Low_complexity Low_complexity 1 30 0 526 111 11 0 chr1 54695773 54695863 -227497801 + L1MA8 LINE L1 6193 6283 -8 1460 197 4 4 chr1 54695887 54696141 -227497523 - AluJo SINE Alu -58 254 1 308 253 116 0 chr1 54696630 54696725 -227496939 - MLT1F1 LTR MaLR -406 161 56 2052 240 54 11 chr1 54696794 54697332 -227496332 - MLT1F1 LTR MaLR -4 563 3 252 280 52 116 chr1 54697332 54697582 -227496082 - MLT1F1-int LTR MaLR 0 1371 1138 664 148 0 0 chr1 54697640 54697748 -227495916 + AluJb SINE Alu 198 305 -7 1024 193 0 47 chr1 54697750 54697983 -227495681 - MLT2C2 LTR ERVL -242 222 1 362 314 44 66 chr1 54698025 54698162 -227495502 - L2 LINE L2 0 3272 3139 334 163 105 0 chr1 54698216 54698302 -227495362 - MIR SINE MIR -4 258 164 22 35 0 0 chr1 54699283 54699312 -227494352 + AT_rich Low_complexity Low_complexity 1 29 0 252 290 40 0 chr1 54699959 54700083 -227493581 - L1ME LINE L1 -363 5799 5671 1749 160 87 29 chr1 54700112 54700456 -227493208 - THE1B LTR MaLR 0 364 1 11651 95 5 1 chr1 54700456 54702029 -227491635 - THE1C-int LTR MaLR 0 1580 1 1970 148 21 29 chr1 54702029 54702407 -227491257 - THE1C LTR MaLR 0 375 1 280 264 47 16 chr1 54702443 54702572 -227491092 - L1ME LINE L1 -671 5495 5363 250 208 14 28 chr1 54702575 54702647 -227491017 + GA-rich Low_complexity Low_complexity 2 72 0 1926 127 24 10 chr1 54703367 54703658 -227490006 - AluSq SINE Alu -18 295 1 2335 96 0 0 chr1 54704125 54704417 -227489247 - AluSx SINE Alu -20 292 1 294 239 17 17 chr1 54704490 54704607 -227489057 + (TTATA)n Simple_repeat Simple_repeat 3 119 0 2209 87 0 45 chr1 54704791 54705100 -227488564 - AluSc SINE Alu -14 295 1 1445 147 37 0 chr1 54705169 54705414 -227488250 - Tigger2 DNA MER2_type -3 2715 2462 982 125 0 0 chr1 54705475 54705619 -227488045 - Tigger2 DNA MER2_type -1973 745 602 1743 201 18 15 chr1 54705619 54705947 -227487717 + L1MCa LINE L1 279 607 -5819 277 177 13 63 chr1 54705920 54705999 -227487665 + L1MCb LINE L1 465 539 -5506 * 237 158 0 0 chr1 54706003 54706041 -227487623 + L1MCb LINE L1 711 748 -5816 * 4220 168 39 56 chr1 54706012 54706507 -227487157 + L1MCb LINE L1 466 968 -5596 2302 146 13 72 chr1 54706507 54706980 -227486684 - MER65A LTR ERV1 0 445 1 4220 168 39 56 chr1 54706980 54707420 -227486244 + L1MCb LINE L1 968 1590 -4974 1805 154 11 0 chr1 54707420 54707706 -227485958 + AluJb SINE Alu 2 290 -22 4220 168 39 56 chr1 54707706 54707839 -227485825 + L1MCb LINE L1 1590 1724 -4840 218 146 42 0 chr1 54707960 54708008 -227485656 + (TATG)n Simple_repeat Simple_repeat 3 52 0 762 295 141 19 chr1 54708043 54708798 -227484866 + L1M4 LINE L1 3497 4349 -1797 242 208 65 39 chr1 54708942 54709019 -227484645 + L1MC5 LINE L1 7514 7592 -369 2064 88 0 48 chr1 54709032 54709354 -227484310 + AluSg SINE Alu 1 308 0 212 111 22 22 chr1 54709360 54709405 -227484259 + T-rich Low_complexity Low_complexity 1 45 0 1458 160 21 69 chr1 54709926 54710214 -227483450 + AluJb SINE Alu 3 276 -36 710 190 4 14 chr1 54710215 54710436 -227483228 + GA-rich Low_complexity Low_complexity 1 219 0 249 192 137 14 chr1 54710673 54710746 -227482918 - MIR SINE MIR -77 185 104 237 350 87 35 chr1 54710872 54711238 -227482426 - L2 LINE L2 -1550 1764 1380 255 114 0 0 chr1 54711420 54711455 -227482209 + MER21B LTR ERV1 3 37 -826 3104 181 76 21 chr1 54711492 54712166 -227481498 + MER21B LTR ERV1 134 844 -19 2622 174 6 10 chr1 54712331 54712844 -227480820 + L1MA6 LINE L1 5790 6300 0 346 310 17 47 chr1 54713188 54713420 -227480244 + L1M4 LINE L1 4357 4581 -1565 1485 235 59 30 chr1 54714263 54714673 -227478991 + L1ME3 LINE L1 5555 5981 -181 2256 113 3 0 chr1 54714673 54714983 -227478681 + AluSp SINE Alu 1 311 -2 1485 235 59 30 chr1 54714983 54715032 -227478632 + L1ME3 LINE L1 5981 6027 -135 1947 127 47 3 chr1 54715046 54715345 -227478319 - AluSq SINE Alu -1 312 1 7083 120 16 6 chr1 54715355 54716856 -227476808 - L1MA1 LINE L1 0 6302 4788 318 295 25 0 chr1 54716855 54716977 -227476687 + L1ME3 LINE L1 6013 6137 -25 * 1401 233 55 66 chr1 54716994 54717690 -227475974 + L1M4 LINE L1 4672 5359 -787 31 26 0 0 chr1 54718134 54718172 -227475492 + AT_rich Low_complexity Low_complexity 1 38 0 1708 181 0 14 chr1 54718428 54718720 -227474944 - AluJo SINE Alu -18 294 7 1397 159 39 136 chr1 54719150 54719217 -227474447 - Tigger2 DNA MER2_type 0 2718 2646 1878 156 6 44 chr1 54719217 54719577 -227474087 - L1PA16 LINE L1 -13 6153 5808 1397 159 39 136 chr1 54719577 54719671 -227473993 - Tigger2 DNA MER2_type -72 2646 2544 2168 96 7 0 chr1 54719671 54719952 -227473712 + AluSp SINE Alu 1 283 -30 1397 159 39 136 chr1 54719952 54720222 -227473442 - Tigger2 DNA MER2_type -174 2544 2328 690 191 0 0 chr1 54720265 54720406 -227473258 + (TG)n Simple_repeat Simple_repeat 1 141 0 9406 191 88 13 chr1 54720423 54723327 -227470337 + L1MB3 LINE L1 97 2781 -3638 1849 172 3 0 chr1 54723327 54723635 -227470029 + AluJb SINE Alu 1 309 -3 9406 191 88 13 chr1 54723635 54724812 -227468852 + L1MB3 LINE L1 2781 6416 -3 345 213 177 98 chr1 54725703 54725867 -227467797 - L2 LINE L2 -22 3291 3115 526 221 24 16 chr1 54726020 54726147 -227467517 - L2 LINE L2 -231 3082 2955 46 62 0 0 chr1 54726452 54726533 -227467131 + AT_rich Low_complexity Low_complexity 1 81 0 229 250 0 0 chr1 54726700 54726752 -227466912 + LTR30 LTR ERV1 1 52 -670 1245 204 209 18 chr1 54726752 54727207 -227466457 + pTR5 LTR ERV1 1395 1936 -502 1009 86 154 0 chr1 54729404 54729566 -227464098 + LTR12 LTR ERV1 99 285 -429 338 211 11 0 chr1 54729566 54729656 -227464008 + LTR30 LTR ERV1 552 642 -80 700 128 47 74 chr1 54729656 54729805 -227463859 + pTR5 LTR ERV1 300 444 -1994 * 7681 121 1 8 chr1 54729783 54730977 -227462687 + HERV9 LTR ERV1 58 1242 -7157 * 12793 112 23 12 chr1 54730975 54733088 -227460576 + Harlequin LTR ERV1 1082 3139 -5260 5939 103 0 8 chr1 54733095 54733971 -227459693 + Harlequin LTR ERV1 4080 4948 -3451 2169 175 112 56 chr1 54733970 54734822 -227458842 + Harlequin LTR ERV1 842 1740 -5156 * 5212 99 3 4 chr1 54734821 54735591 -227458073 + Harlequin LTR ERV1 7627 8395 -4 235 250 0 0 chr1 54735594 54735646 -227458018 + LTR30 LTR ERV1 1 52 -670 1384 146 164 10 chr1 54735646 54736129 -227457535 + LTR12 LTR ERV1 58 1999 -439 374 264 16 0 chr1 54736129 54736254 -227457410 + LTR30 LTR ERV1 517 643 -79 670 99 0 10 chr1 54736256 54736357 -227457307 + LTR12 LTR ERV1 615 714 0 26 30 0 0 chr1 54736471 54736504 -227457160 + AT_rich Low_complexity Low_complexity 1 33 0 2576 52 10 0 chr1 54736881 54737187 -227456477 + AluY SINE Alu 1 309 -2 1427 237 175 53 chr1 54737484 54738160 -227455504 - LTR41 LTR ERVL -8 765 8 1249 229 53 33 chr1 54738162 54738372 -227455292 + L1M4 LINE L1 2473 2677 -3469 2265 133 46 50 chr1 54738372 54738736 -227454928 + Tigger2a DNA MER2_type 1 364 -2344 2111 126 0 0 chr1 54738736 54739030 -227454634 + AluSx SINE Alu 1 294 -18 2265 133 46 50 chr1 54739030 54739101 -227454563 + Tigger2a DNA MER2_type 364 434 0 1249 229 53 33 chr1 54739101 54739435 -227454229 + L1M4 LINE L1 2677 3028 -3118 467 141 0 0 chr1 54739435 54739506 -227454158 + U4 snRNA snRNA 1 71 -74 1338 159 5 9 chr1 54739561 54739775 -227453889 + AluJb SINE Alu 85 297 -15 1290 167 0 41 chr1 54739819 54740064 -227453600 + Tigger4(Zombi) DNA MER2_type 1 235 -2496 1545 203 38 44 chr1 54740077 54740550 -227453114 + L1ME1 LINE L1 5692 6161 -5 996 221 53 135 chr1 54740547 54741504 -227452160 + L1MC5 LINE L1 7017 7895 -66 * 1000 298 114 7 chr1 54743282 54743712 -227449952 + L2 LINE L2 2818 3293 -20 273 230 0 0 chr1 54743712 54743786 -227449878 + GA-rich Low_complexity Low_complexity 3 76 0 2200 114 0 0 chr1 54743884 54744183 -227449481 - AluSx SINE Alu -13 299 1 352 287 56 0 chr1 54745211 54745319 -227448345 + L2 LINE L2 3180 3293 -20 264 224 0 0 chr1 54745326 54745393 -227448271 + GA-rich Low_complexity Low_complexity 2 68 0 375 73 0 0 chr1 54745504 54745559 -227448105 - Alu SINE Alu -3 299 245 262 308 15 69 chr1 54746178 54746308 -227447356 - MIR3 SINE MIR -13 195 73 273 204 0 0 chr1 54746311 54746360 -227447304 + MIR SINE MIR 180 228 -34 964 201 56 56 chr1 54746654 54746881 -227446783 + MER33 DNA MER1_type 1 230 -2355 2210 94 7 13 chr1 54746881 54747179 -227446485 - AluY SINE Alu -15 296 1 964 201 56 56 chr1 54747179 54747275 -227446389 + MER33 DNA MER1_type 229 324 0 307 250 29 48 chr1 54747382 54747486 -227446178 + L1MEc LINE L1 2133 2234 -4162 3249 233 93 51 chr1 54747487 54748501 -227445163 + L1M4 LINE L1 586 1556 -5090 496 128 0 0 chr1 54748501 54748579 -227445085 + FLAM_A SINE Alu 53 130 -12 3249 233 93 51 chr1 54748579 54748651 -227445013 + L1M4 LINE L1 1556 1624 -5022 2236 121 0 0 chr1 54748651 54748956 -227444708 + AluSx SINE Alu 3 307 -5 3249 233 93 51 chr1 54748956 54749847 -227443817 + L1M4 LINE L1 1624 2735 -3911 515 185 0 19 chr1 54749829 54749937 -227443727 + L1MB7 LINE L1 5800 5905 -279 * 238 209 75 0 chr1 54749981 54750048 -227443616 - LTR60 LTR ERV1 -514 72 1 2013 148 37 22 chr1 54750048 54750423 -227443241 + L1MB7 LINE L1 5754 6137 -47 2122 128 0 3 chr1 54750423 54750729 -227442935 + AluSg SINE Alu 1 305 -5 2013 148 37 22 chr1 54750729 54750758 -227442906 + L1MB7 LINE L1 6137 6164 -20 1690 238 70 40 chr1 54750764 54751473 -227442191 + L1M4 LINE L1 2752 3482 -3162 1790 173 17 7 chr1 54751477 54751766 -227441898 - AluJo SINE Alu -20 292 1 851 248 70 57 chr1 54751835 54752238 -227441426 + L1M4 LINE L1 4407 4814 -1830 28 95 0 0 chr1 54752334 54752418 -227441246 + AT_rich Low_complexity Low_complexity 1 84 0 234 146 24 0 chr1 54752425 54752466 -227441198 + MER57A LTR ERV1 295 336 -67 271 211 55 83 chr1 54752493 54752602 -227441062 + L1ME3A LINE L1 1081 1186 -4933 * 4051 23 4 0 chr1 54752593 54753107 -227440557 - L1PA3 LINE L1 -745 5401 4886 6345 33 0 0 chr1 54753107 54753857 -227439807 + L1PA3 LINE L1 5404 6154 -1 319 369 71 11 chr1 54753983 54754251 -227439413 + L1ME3A LINE L1 2475 2758 -3371 2696 159 39 29 chr1 54754263 54754773 -227438891 + MLT2B2 LTR ERVL 1 515 0 218 184 0 0 chr1 54754815 54754853 -227438811 + (TATG)n Simple_repeat Simple_repeat 3 40 0 443 287 58 16 chr1 54754907 54755095 -227438569 + L1ME3A LINE L1 2839 3034 -3095 531 271 72 127 chr1 54755306 54755810 -227437854 + L1ME3A LINE L1 3686 4157 -1972 243 0 0 0 chr1 54755810 54755837 -227437827 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 531 271 72 127 chr1 54755837 54755900 -227437764 + L1ME3A LINE L1 4157 4222 -1907 582 214 110 71 chr1 54755947 54756336 -227437328 + L1ME3A LINE L1 5637 6040 -113 841 194 83 19 chr1 54756706 54756922 -227436742 + MLT1C LTR MaLR 234 463 -4 1161 225 87 51 chr1 54757009 54757617 -227436047 - MER20B DNA MER1_type -84 699 3 341 318 64 61 chr1 54757640 54757904 -227435760 + L1ME2 LINE L1 5686 5950 -214 189 203 108 54 chr1 54757994 54758068 -227435596 - L2 LINE L2 -2791 523 446 21 82 0 0 chr1 54758157 54758206 -227435458 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr1 54758454 54758482 -227435182 + AT_rich Low_complexity Low_complexity 1 28 0 2438 147 71 45 chr1 54758965 54759699 -227433965 + L1M2 LINE L1 5115 5783 -395 897 183 53 0 chr1 54759727 54759935 -227433729 - L1ME2 LINE L1 -186 5978 5760 491 164 0 19 chr1 54759948 54760052 -227433612 - L1MA7 LINE L1 -26 6265 6164 362 247 0 0 chr1 54760083 54760180 -227433484 + L1ME2 LINE L1 6001 6097 -67 287 239 85 81 chr1 54760202 54760449 -227433215 + L1MC5 LINE L1 7468 7715 -246 972 200 6 0 chr1 54760467 54760632 -227433032 - FAM SINE Alu -9 166 1 290 209 124 52 chr1 54760633 54760843 -227432821 + L1MC4 LINE L1 7809 8033 -9 280 183 98 24 chr1 54760879 54760961 -227432703 + L1MC4a LINE L1 5842 5929 -1879 258 56 0 0 chr1 54760964 54761000 -227432664 + (TA)n Simple_repeat Simple_repeat 2 37 0 300 364 38 30 chr1 54761409 54761541 -227432123 + MIR3 SINE MIR 67 199 -9 370 325 178 51 chr1 54763375 54763981 -227429683 - L1M2 LINE L1 -5788 1061 379 237 164 98 16 chr1 54764003 54764064 -227429600 + MIR SINE MIR 88 153 -109 188 202 211 67 chr1 54764110 54764214 -227429450 - MIR SINE MIR -72 136 18 940 252 111 70 chr1 54764464 54765410 -227428254 - L1ME3A LINE L1 -8 6231 5232 313 336 79 9 chr1 54765413 54765731 -227427933 - L1ME LINE L1 -531 5631 5292 400 192 30 30 chr1 54765854 54765953 -227427711 - AluSg/x SINE Alu -8 301 203 2200 131 17 3 chr1 54765953 54766303 -227427361 + THE1A LTR MaLR 1 355 0 11320 96 15 1 chr1 54766303 54767862 -227425802 + THE1A-int LTR MaLR 1 1580 0 2072 89 10 111 chr1 54767862 54768096 -227425568 + THE1A LTR MaLR 1 180 -175 2688 39 3 9 chr1 54768096 54768430 -227425234 + L1PA7 LINE L1 5821 6152 -2 2072 89 10 111 chr1 54768430 54768590 -227425074 + THE1A LTR MaLR 180 355 0 1411 157 0 0 chr1 54768590 54768800 -227424864 - AluJb SINE Alu -102 210 1 926 168 50 0 chr1 54768904 54769065 -227424599 + AluJb SINE Alu 130 298 -14 423 270 101 65 chr1 54769109 54769635 -227424029 - L1ME3A LINE L1 -1096 5119 4575 2398 86 3 7 chr1 54769635 54769938 -227423726 - AluSg SINE Alu -8 302 1 7371 47 6 34 chr1 54770209 54771790 -227421874 + SVA Other Other 2 1423 0 1869 208 30 44 chr1 54771854 54772358 -227421306 - MLT1D LTR MaLR -8 497 1 865 188 102 109 chr1 54772370 54772939 -227420725 + L1MC5 LINE L1 6906 7470 -491 744 175 60 108 chr1 54772999 54773313 -227420351 + L1MC5 LINE L1 7603 7901 -60 455 283 99 17 chr1 54773341 54773634 -227420030 - L1ME3A LINE L1 -2200 4015 3699 288 299 18 36 chr1 54773868 54774035 -227419629 - L1ME3A LINE L1 -6211 185 22 2352 68 0 10 chr1 54774514 54774806 -227418858 + AluSc SINE Alu 1 289 -20 330 258 10 31 chr1 54774806 54774897 -227418767 + L1MC4 LINE L1 6615 6703 -1339 750 137 31 6 chr1 54774903 54775258 -227418406 + (TA)n Simple_repeat Simple_repeat 1 364 0 303 261 0 67 chr1 54775258 54775377 -227418287 - L1MC4 LINE L1 -1323 6719 6609 334 139 28 0 chr1 54775377 54775449 -227418215 + (TA)n Simple_repeat Simple_repeat 1 74 0 302 245 9 47 chr1 54775449 54775555 -227418109 - L1MC4 LINE L1 -1333 6709 6608 278 98 20 0 chr1 54775517 54775568 -227418096 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr1 54775555 54775577 -227418087 + AT_rich Low_complexity Low_complexity 1 22 0 203 270 48 32 chr1 54775577 54775640 -227418024 - MIR3 SINE MIR -51 157 94 288 297 30 10 chr1 54775842 54775943 -227417721 + MIR SINE MIR 36 138 -70 673 266 79 5 chr1 54776763 54776977 -227416687 - MIR SINE MIR -1 261 32 2216 201 97 4 chr1 54777731 54778193 -227415471 + MLT1D LTR MaLR 1 505 0 1783 107 0 8 chr1 54778400 54778644 -227415020 - AluY SINE Alu -34 277 36 1654 137 301 0 chr1 54778845 54779174 -227414490 + MSTA LTR MaLR 1 428 0 422 259 106 8 chr1 54779202 54779334 -227414330 + MER5B DNA MER1_type 38 178 0 2382 151 16 3 chr1 54779386 54779758 -227413906 + MLT1B LTR MaLR 14 390 0 33 25 0 0 chr1 54779958 54779998 -227413666 + AT_rich Low_complexity Low_complexity 1 40 0 304 297 106 44 chr1 54779998 54780291 -227413373 - MLT1L LTR MaLR -65 550 240 235 117 0 50 chr1 54780620 54780680 -227412984 + (TCTCCC)n Simple_repeat Simple_repeat 4 60 0 2355 78 3 29 chr1 54780773 54781082 -227412582 + AluY SINE Alu 1 301 -10 182 62 31 0 chr1 54781087 54781119 -227412545 + (TA)n Simple_repeat Simple_repeat 1 33 0 1990 111 7 7 chr1 54781119 54781399 -227412265 - AluSg SINE Alu -30 280 1 1827 169 7 3 chr1 54781401 54781696 -227411968 - AluSx SINE Alu -16 296 1 341 340 114 51 chr1 54781698 54781782 -227411882 - L3 LINE CR1 -71 1506 1429 433 298 184 18 chr1 54781782 54781950 -227411714 + MER91A DNA MER1_type 1 196 0 341 340 114 51 chr1 54781950 54782259 -227411405 - L3 LINE CR1 -148 1429 1088 349 313 76 69 chr1 54782350 54782625 -227411039 - L2 LINE L2 -1236 2078 1806 1816 154 19 19 chr1 54782625 54782937 -227410727 + AluJb SINE Alu 1 312 0 349 313 76 69 chr1 54782937 54783253 -227410411 - L2 LINE L2 -1508 1806 1483 2191 207 78 9 chr1 54784187 54784753 -227408911 - MER69 DNA AcHobo -14 2512 1908 1212 271 55 16 chr1 54784750 54785071 -227408593 - MER69 DNA AcHobo -782 444 104 * 2219 111 0 13 chr1 54785071 54785386 -227408278 + AluY SINE Alu 1 311 0 1212 271 55 16 chr1 54785386 54785448 -227408216 - MER69 DNA AcHobo -1122 104 46 850 156 0 15 chr1 54786452 54786587 -227407077 + FLAM_C SINE Alu 1 133 0 1655 241 142 2 chr1 54787066 54787497 -227406167 - LTR16C LTR ERVL 0 491 1 707 278 91 47 chr1 54787789 54787941 -227405723 + MER20B DNA MER1_type 2 146 -637 2353 76 7 7 chr1 54787941 54788243 -227405421 + AluSc SINE Alu 1 302 -7 707 278 91 47 chr1 54788243 54788278 -227405386 + MER20B DNA MER1_type 146 178 -605 1843 172 3 0 chr1 54788278 54788580 -227405084 - AluJb SINE Alu -9 303 1 707 278 91 47 chr1 54788580 54788711 -227404953 + MER20B DNA MER1_type 178 335 -448 1523 235 45 25 chr1 54789280 54789726 -227403938 + MER20B DNA MER1_type 329 783 0 393 250 107 0 chr1 54790717 54790829 -227402835 + L3 LINE CR1 1346 1469 -108 2543 124 53 21 chr1 54792057 54792493 -227401171 + LTR7 LTR ERV1 1 450 0 620 230 68 7 chr1 54792721 54792869 -227400795 - MER5A DNA MER1_type -1 188 32 1370 198 24 0 chr1 54792869 54793122 -227400542 + LTR32 LTR ERVL 15 273 -198 180 222 67 0 chr1 54793306 54793351 -227400313 + MIR SINE MIR 88 135 -127 3029 78 13 0 chr1 54793955 54794350 -227399314 - MLT2A1 LTR ERVL -44 400 1 1009 145 84 11 chr1 54794350 54794529 -227399135 + LTR32 LTR ERVL 268 459 -12 240 139 0 0 chr1 54794535 54794571 -227399093 - MER5A DNA MER1_type -153 36 1 333 130 22 109 chr1 54794590 54794682 -227398982 + MER105 DNA DNA 121 204 0 1078 197 19 14 chr1 54794689 54794897 -227398767 + MER58A DNA MER1_type 1 209 -15 359 239 11 11 chr1 54795372 54795460 -227398204 - L2 LINE L2 0 3313 3226 346 247 11 34 chr1 54795460 54795549 -227398115 + HAL1 LINE L1 744 830 -1677 774 234 74 0 chr1 54795762 54795993 -227397671 - L1ME3A LINE L1 -219 5951 5704 423 49 0 66 chr1 54795993 54796054 -227397610 - AluY SINE Alu -11 299 243 588 71 0 0 chr1 54796154 54796224 -227397440 - Alu SINE Alu -239 71 2 677 309 37 4 chr1 54796228 54796474 -227397190 - L1ME3A LINE L1 -448 5714 5461 3707 151 70 61 chr1 54796501 54797201 -227396463 - L1MB1 LINE L1 -5 6163 5454 2201 124 7 7 chr1 54797201 54797508 -227396156 - AluSx SINE Alu -5 307 1 3707 151 70 61 chr1 54797508 54797610 -227396054 - L1MB1 LINE L1 -714 5454 5354 628 290 149 8 chr1 54797632 54797880 -227395784 + LTR33 LTR ERVL 1 283 -238 260 247 11 11 chr1 54797955 54798044 -227395620 + LTR33 LTR ERVL 410 498 -23 1796 176 7 3 chr1 54798158 54798459 -227395205 - AluJb SINE Alu -10 302 1 318 235 56 103 chr1 54798488 54798701 -227394963 - L1ME3A LINE L1 -6 6164 5962 444 204 116 29 chr1 54798887 54799059 -227394605 - L1MC5 LINE L1 -540 7421 7235 2281 165 136 54 chr1 54799074 54799553 -227394111 + MLT2B1 LTR ERVL 3 520 0 1312 199 39 98 chr1 54799572 54800029 -227393635 - L1MC5 LINE L1 -886 7075 6646 * 2403 229 68 33 chr1 54800022 54800820 -227392844 - L1M4 LINE L1 -2125 4021 3196 609 196 14 22 chr1 54801079 54801217 -227392447 + L1M4 LINE L1 3607 3743 -2403 836 327 88 40 chr1 54801446 54802097 -227391567 + ERVL LTR ERVL 1663 2344 -3420 500 324 31 11 chr1 54802339 54802536 -227391128 + ERVL LTR ERVL 2599 2836 -2219 648 299 26 81 chr1 54802636 54802922 -227390742 - L2 LINE L2 -351 2963 2698 2063 141 0 0 chr1 54802922 54803213 -227390451 + AluSx SINE Alu 1 291 -21 648 299 26 81 chr1 54803213 54803274 -227390390 - L2 LINE L2 -616 2698 2635 232 317 17 42 chr1 54803327 54803447 -227390217 - L2 LINE L2 -1006 2308 2192 449 283 65 14 chr1 54803469 54803607 -227390057 + MIR SINE MIR 2 146 -116 242 314 0 14 chr1 54804695 54804765 -227388899 + MIR SINE MIR 19 87 -175 1585 263 50 17 chr1 54804765 54805229 -227388435 + LTR16C LTR ERVL 11 489 -2 440 229 16 25 chr1 54805233 54805355 -227388309 + MIR SINE MIR 87 207 -55 3949 98 0 15 chr1 54805402 54805921 -227387743 - MER9 LTR ERVK 0 511 1 45723 68 7 2 chr1 54805921 54811901 -227381763 - HERVK9 LTR ERVK 0 8033 1 3840 115 0 4 chr1 54811901 54812414 -227381250 - MER9 LTR ERVK 0 511 1 431 240 155 34 chr1 54812415 54812769 -227380895 + L1ME4a LINE L1 5725 6121 0 233 323 54 11 chr1 54813368 54813461 -227380203 - L2 LINE L2 -5 3267 3171 595 299 17 13 chr1 54813814 54814045 -227379619 + LTR16C LTR ERVL 260 491 0 250 277 179 22 chr1 54814326 54814493 -227379171 - MIR SINE MIR -63 145 4 1429 93 0 0 chr1 54814924 54815106 -227378558 + AluSg/x SINE Alu 125 306 -6 626 306 16 11 chr1 54815206 54815392 -227378272 - MIR3 SINE MIR -3 205 19 211 308 0 66 chr1 54815556 54815647 -227378017 - MIR SINE MIR -79 183 99 2338 161 3 0 chr1 54815886 54816233 -227377431 - MER7A DNA MER2_type 0 346 1 296 217 14 29 chr1 54817837 54817906 -227375758 - MIR SINE MIR -102 106 39 620 286 65 23 chr1 54818427 54818644 -227375020 + MIR SINE MIR 20 245 -17 215 222 19 0 chr1 54818648 54818702 -227374962 + (CAG)n Simple_repeat Simple_repeat 3 57 0 369 247 6 23 chr1 54818704 54818878 -227374786 + (TAG)n Simple_repeat Simple_repeat 1 171 0 2163 105 7 10 chr1 54819470 54819765 -227373899 + AluSc SINE Alu 1 294 -15 218 367 75 0 chr1 54819947 54820067 -227373597 - L2 LINE L2 -787 2527 2399 214 170 85 0 chr1 54820128 54820175 -227373489 - L2 LINE L2 -674 2640 2590 300 278 158 23 chr1 54820221 54820354 -227373310 - MIR SINE MIR -83 179 29 251 373 7 7 chr1 54820390 54820543 -227373121 - L2 LINE L2 -787 2527 2375 318 298 28 68 chr1 54820682 54820830 -227372834 + MIR SINE MIR 11 152 -63 264 289 93 21 chr1 54821224 54821321 -227372343 - L2 LINE L2 0 3313 3210 621 307 44 10 chr1 54821523 54821728 -227371936 - MIR SINE MIR -45 217 6 431 313 50 25 chr1 54822316 54822514 -227371150 + MIR SINE MIR 52 254 -8 582 314 16 111 chr1 54823570 54823913 -227369751 - L3 LINE CR1 -45 1532 1158 249 57 0 0 chr1 54823913 54823948 -227369716 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2159 92 0 27 chr1 54823948 54824240 -227369424 - AluSx SINE Alu -28 284 1 582 314 16 111 chr1 54824240 54824328 -227369336 - L3 LINE CR1 -417 1160 1141 578 243 32 101 chr1 54824389 54824607 -227369057 - MIR SINE MIR -59 203 1 439 370 21 13 chr1 54824622 54824857 -227368807 - L3 LINE CR1 -454 1123 887 288 0 0 0 chr1 54825193 54825225 -227368439 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 276 273 80 11 chr1 54826494 54826582 -227367082 + L2 LINE L2 3107 3200 -72 207 307 43 79 chr1 54826582 54826722 -227366942 - L2 LINE L2 -56 3257 3123 274 325 0 0 chr1 54827006 54827083 -227366581 + MIR SINE MIR 68 144 -118 194 337 12 24 chr1 54827965 54828048 -227365616 + MIR3 SINE MIR 108 189 -19 393 295 70 124 chr1 54828057 54828501 -227365163 - L2 LINE L2 -12 3260 2841 302 294 126 8 chr1 54829684 54829803 -227363861 + MIR3 SINE MIR 43 175 -33 189 250 150 67 chr1 54830022 54830142 -227363522 + L2 LINE L2 3143 3272 0 211 292 46 0 chr1 54830384 54830449 -227363215 - MIR SINE MIR -92 116 49 531 255 128 27 chr1 54830466 54830654 -227363010 - MIR SINE MIR -10 252 46 267 288 144 50 chr1 54830716 54830876 -227362788 + MIR SINE MIR 46 220 -42 317 267 155 35 chr1 54831335 54831451 -227362213 - MIR SINE MIR -27 235 106 819 279 10 5 chr1 54831999 54832203 -227361461 - MIR SINE MIR -41 221 17 613 323 94 55 chr1 54832845 54833639 -227360025 + L2 LINE L2 2460 3272 0 2000 129 10 0 chr1 54833650 54833953 -227359711 + AluSq SINE Alu 5 310 -3 500 204 34 102 chr1 54833955 54834001 -227359663 - MIR SINE MIR 0 262 214 7259 47 13 0 chr1 54834001 54835066 -227358598 - L1PA7 LINE L1 -1 6153 5083 500 204 34 102 chr1 54835066 54835166 -227358498 - MIR SINE MIR -48 214 126 504 48 0 0 chr1 54835538 54835601 -227358063 + (TCCA)n Simple_repeat Simple_repeat 1 63 0 741 249 118 9 chr1 54835922 54836143 -227357521 - MIR SINE MIR -10 252 8 188 304 18 18 chr1 54836526 54836582 -227357082 + MIR SINE MIR 23 78 -184 853 256 155 43 chr1 54836585 54837120 -227356544 + MLT1G1 LTR MaLR 1 595 0 219 286 0 0 chr1 54837120 54837169 -227356495 + MIR SINE MIR 82 130 -78 186 43 0 0 chr1 54837230 54837253 -227356411 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 207 114 0 0 chr1 54838041 54838076 -227355588 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 349 300 28 37 chr1 54838298 54838449 -227355215 - MIR SINE MIR -66 142 39 211 276 206 55 chr1 54838855 54839009 -227354655 - L2 LINE L2 -4 3309 3180 336 64 0 0 chr1 54839009 54839056 -227354608 + (CA)n Simple_repeat Simple_repeat 2 48 0 211 276 206 55 chr1 54839056 54839158 -227354506 - L2 LINE L2 -133 3180 3014 1166 282 104 20 chr1 54839186 54839725 -227353939 - L2 LINE L2 -421 2893 2310 341 229 147 37 chr1 54839961 54840070 -227353594 + MIR SINE MIR 20 140 -68 926 243 46 55 chr1 54840156 54840485 -227353179 - L2 LINE L2 0 3313 2988 202 236 202 22 chr1 54840944 54841033 -227352631 - MIR SINE MIR -109 153 49 480 187 56 19 chr1 54841048 54841155 -227352509 - L2 LINE L2 0 3313 3203 360 139 0 50 chr1 54841607 54841708 -227351956 + (GGGAGA)n Simple_repeat Simple_repeat 2 97 0 231 369 11 11 chr1 54841854 54842030 -227351634 + GA-rich Low_complexity Low_complexity 1 176 0 230 300 0 22 chr1 54842069 54842159 -227351505 + (CAGAGA)n Simple_repeat Simple_repeat 4 91 0 1587 193 108 68 chr1 54842320 54842803 -227350861 - MLT1D LTR MaLR -3 502 1 206 297 62 16 chr1 54842952 54843016 -227350648 - MIR SINE MIR -176 86 20 363 329 124 20 chr1 54843095 54843344 -227350320 + L2 LINE L2 2563 2837 -477 612 290 70 9 chr1 54843359 54843573 -227350091 + MIR SINE MIR 9 235 -27 261 307 0 11 chr1 54843704 54843792 -227349872 + GA-rich Low_complexity Low_complexity 2 88 0 289 267 76 29 chr1 54843826 54843931 -227349733 + MIR3 SINE MIR 84 193 -15 255 117 50 0 chr1 54844182 54844225 -227349439 + (TTCA)n Simple_repeat Simple_repeat 3 51 -14 2121 114 0 0 chr1 54844225 54844514 -227349150 - AluSg SINE Alu -21 289 1 255 117 50 0 chr1 54844514 54844530 -227349134 + (TTCA)n Simple_repeat Simple_repeat 51 65 0 280 225 17 133 chr1 54844534 54844654 -227349010 - L2 LINE L2 0 3313 3208 1030 176 47 0 chr1 54844670 54844863 -227348801 - MER20 DNA MER1_type -17 202 1 407 281 56 51 chr1 54845557 54845753 -227347911 + MIR3 SINE MIR 7 203 -5 441 278 28 28 chr1 54846401 54846545 -227347119 + MIR3 SINE MIR 10 153 -55 328 310 63 51 chr1 54846889 54847047 -227346617 - MIR SINE MIR -98 164 5 339 268 171 8 chr1 54847078 54847201 -227346463 - L2 LINE L2 0 3313 3171 342 224 154 65 chr1 54847380 54847581 -227346083 - L2 LINE L2 -6 3307 3089 301 348 88 36 chr1 54847677 54848120 -227345544 - L2 LINE L2 -464 2850 2385 553 282 52 126 chr1 54848698 54848928 -227344736 + L2 LINE L2 2930 3125 -147 1698 151 3 7 chr1 54848928 54849242 -227344422 - AluSx SINE Alu 0 312 1 553 282 52 126 chr1 54849242 54849376 -227344288 + L2 LINE L2 3125 3267 -5 300 307 68 0 chr1 54850042 54850130 -227343534 + L2 LINE L2 3129 3222 -50 285 247 56 11 chr1 54850206 54850295 -227343369 + MIR SINE MIR 118 210 -52 1171 248 106 47 chr1 54850565 54851037 -227342627 + MLT1K LTR MaLR 89 588 0 191 292 0 0 chr1 54851038 54851086 -227342578 - MIR3 SINE MIR -35 173 126 293 313 82 8 chr1 54851662 54851796 -227341868 + MIR SINE MIR 119 262 0 227 354 0 0 chr1 54852022 54852087 -227341577 + L2 LINE L2 3243 3307 -6 251 283 82 63 chr1 54852100 54852259 -227341405 + L2 LINE L2 2928 3089 -183 285 224 24 71 chr1 54852803 54852888 -227340776 + MIR SINE MIR 58 138 -70 272 284 15 0 chr1 54852884 54852951 -227340713 - L2 LINE L2 -5 3267 3200 * 289 158 50 30 chr1 54853365 54853466 -227340198 + CT-rich Low_complexity Low_complexity 3 105 0 1977 200 53 40 chr1 54853639 54854113 -227339551 + MLT2B1 LTR ERVL 1 480 -40 386 82 0 6 chr1 54854186 54854245 -227339419 + MLT2B1 LTR ERVL 388 520 0 435 209 45 36 chr1 54854859 54854969 -227338695 - MIR SINE MIR -132 130 20 254 315 27 0 chr1 54854974 54855047 -227338617 - L2 LINE L2 -2 3311 3237 193 194 14 14 chr1 54855609 54855681 -227337983 + GA-rich Low_complexity Low_complexity 1 72 0 257 312 0 32 chr1 54855689 54855843 -227337821 + (CAGA)n Simple_repeat Simple_repeat 2 150 0 276 361 80 28 chr1 54856230 54856657 -227337007 + L2 LINE L2 2511 2959 -355 180 0 0 0 chr1 54856911 54856931 -227336733 + (CCAA)n Simple_repeat Simple_repeat 1 20 0 575 273 60 42 chr1 54857772 54857988 -227335676 + MIR SINE MIR 13 232 -30 310 368 42 14 chr1 54858153 54858365 -227335299 + L2 LINE L2 2661 2878 -436 193 328 35 0 chr1 54858618 54858676 -227334988 + MIR SINE MIR 14 73 -189 1479 209 13 10 chr1 54858676 54858983 -227334681 + MLT2D LTR ERVL 1 308 -106 745 179 0 0 chr1 54859000 54859123 -227334541 + FLAM_C SINE Alu 2 124 -19 459 138 0 85 chr1 54859132 54859226 -227334438 + MLT2D LTR ERVL 329 414 0 361 259 37 0 chr1 54859226 54859334 -227334330 + MIR SINE MIR 69 180 -82 216 0 0 0 chr1 54860444 54860468 -227333196 + (TC)n Simple_repeat Simple_repeat 1 24 0 289 250 0 0 chr1 54860723 54860787 -227332877 - MLT1I LTR MaLR -287 122 59 463 319 55 59 chr1 54860881 54861154 -227332510 + L2 LINE L2 3001 3272 0 301 345 82 0 chr1 54861408 54861518 -227332146 + L2 LINE L2 3142 3260 -12 242 310 43 26 chr1 54861529 54861645 -227332019 - MIR SINE MIR -58 150 33 316 288 68 90 chr1 54861821 54862043 -227331621 + MIR SINE MIR 2 218 -44 501 294 128 38 chr1 54862600 54862811 -227330853 + MIR SINE MIR 20 249 -13 866 259 26 22 chr1 54863211 54863443 -227330221 - MIR SINE MIR -25 237 5 228 299 0 47 chr1 54864211 54864318 -227329346 + GA-rich Low_complexity Low_complexity 3 104 0 217 352 0 28 chr1 54864545 54864653 -227329011 + GA-rich Low_complexity Low_complexity 2 106 0 258 56 0 0 chr1 54864677 54864713 -227328951 + (TG)n Simple_repeat Simple_repeat 1 36 0 1014 220 43 35 chr1 54865960 54866215 -227327449 - MIR SINE MIR 0 262 6 347 253 46 11 chr1 54866478 54866565 -227327099 + MIR SINE MIR 108 197 -65 225 94 0 0 chr1 54866672 54866704 -227326960 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 352 255 113 29 chr1 54867160 54867341 -227326323 - MIR3 SINE MIR -24 184 34 260 318 119 58 chr1 54867769 54868080 -227325584 + L2 LINE L2 2926 3255 -17 769 278 51 69 chr1 54868133 54868221 -227325443 - L3 LINE CR1 -232 1345 1257 2043 150 15 26 chr1 54868221 54868561 -227325103 + MER1B DNA MER1_type 1 336 -1 769 278 51 69 chr1 54868561 54868667 -227324997 - L3 LINE CR1 -320 1257 1151 512 209 26 35 chr1 54868667 54868782 -227324882 - MER81 DNA DNA 0 114 1 769 278 51 69 chr1 54868782 54868978 -227324686 - L3 LINE CR1 -426 1151 961 198 250 0 0 chr1 54869210 54869258 -227324406 - L2 LINE L2 -1 3312 3265 445 290 77 19 chr1 54870083 54870238 -227323426 + MIR3 SINE MIR 11 174 -34 291 376 8 0 chr1 54870261 54870378 -227323286 - MIR3 SINE MIR -27 181 64 183 184 0 0 chr1 54870426 54870464 -227323200 + (TTA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chr1 54870902 54870928 -227322736 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 285 264 28 94 chr1 54870965 54871071 -227322593 - MIR SINE MIR -91 117 19 416 298 44 62 chr1 54871174 54871370 -227322294 + L2 LINE L2 2243 2434 -880 1957 124 0 40 chr1 54871370 54871693 -227321971 - AluSx SINE Alu -2 310 1 416 298 44 62 chr1 54871693 54871768 -227321896 + L2 LINE L2 2434 2509 -805 2357 58 6 26 chr1 54871781 54872093 -227321571 + AluY SINE Alu 1 306 -5 559 282 109 14 chr1 54873854 54874074 -227319590 - MIR SINE MIR -8 254 14 226 190 14 176 chr1 54874497 54874639 -227319025 - MIR3 SINE MIR 0 208 90 570 273 58 12 chr1 54874771 54874943 -227318721 - MIR SINE MIR -10 252 73 723 214 11 44 chr1 54875487 54875669 -227317995 - MIR SINE MIR -67 195 20 290 276 59 53 chr1 54875689 54875867 -227317797 - MIR SINE MIR -55 207 31 375 312 8 8 chr1 54876266 54876391 -227317273 + L2 LINE L2 2550 2674 -640 191 303 33 99 chr1 54876513 54876588 -227317076 + L2 LINE L2 2950 3012 -260 2180 117 0 0 chr1 54876588 54876888 -227316776 + AluSg SINE Alu 1 300 -10 191 303 33 99 chr1 54876888 54876964 -227316700 + L2 LINE L2 3012 3091 -181 342 270 0 22 chr1 54876978 54877067 -227316597 + L2 LINE L2 3222 3308 -5 297 384 20 0 chr1 54877116 54877267 -227316397 + L2 LINE L2 3116 3269 -3 436 293 8 49 chr1 54878477 54878716 -227314948 + GA-rich Low_complexity Low_complexity 1 229 0 230 272 12 25 chr1 54878787 54878868 -227314796 - L3 LINE CR1 -73 1504 1425 252 328 90 8 chr1 54879345 54879479 -227314185 + MIR SINE MIR 56 200 -62 762 162 0 0 chr1 54879634 54879751 -227313913 + FLAM_A SINE Alu 1 117 -16 2150 72 4 8 chr1 54879751 54880061 -227313603 - AluY SINE Alu 0 311 28 212 171 0 0 chr1 54880074 54880115 -227313549 + A-rich Low_complexity Low_complexity 1 41 0 320 246 43 96 chr1 54880153 54880340 -227313324 - MIR SINE MIR -54 208 32 398 303 30 8 chr1 54880490 54880622 -227313042 + MIR SINE MIR 52 186 -76 270 0 0 0 chr1 54880803 54880833 -227312831 + (TG)n Simple_repeat Simple_repeat 2 31 0 294 187 44 66 chr1 54880853 54880944 -227312720 - MIR3 SINE MIR -1 207 119 744 12 0 0 chr1 54880947 54881032 -227312632 + (GAGAA)n Simple_repeat Simple_repeat 5 89 0 344 296 21 21 chr1 54881344 54881486 -227312178 + MIR3 SINE MIR 67 208 0 1646 156 19 55 chr1 54882124 54882281 -227311383 + AluJo SINE Alu 1 140 -172 2503 66 0 3 chr1 54882281 54882584 -227311080 + AluSp SINE Alu 1 302 -11 1646 156 19 55 chr1 54882584 54882752 -227310912 + AluJo SINE Alu 140 312 0 195 274 85 47 chr1 54882793 54882899 -227310765 + L2 LINE L2 3140 3249 -23 247 129 29 29 chr1 54883204 54883274 -227310390 + (CA)n Simple_repeat Simple_repeat 1 70 0 292 281 46 9 chr1 54883567 54883717 -227309947 + MIR SINE MIR 30 145 -63 25 0 0 0 chr1 54883752 54883777 -227309887 + AT_rich Low_complexity Low_complexity 1 25 0 324 316 120 0 chr1 54884870 54885003 -227308661 - MIR3 SINE MIR -18 190 42 29 28 0 0 chr1 54885008 54885044 -227308620 + AT_rich Low_complexity Low_complexity 1 36 0 238 133 0 22 chr1 54885045 54885090 -227308574 - L1PB4 LINE L1 -5 6151 6108 812 252 113 88 chr1 54885379 54885629 -227308035 - L1MC4a LINE L1 -674 5482 5240 2135 103 0 4 chr1 54885629 54885947 -227307717 + AluSg SINE Alu 1 317 0 812 252 113 88 chr1 54885947 54886203 -227307461 - L1MC4a LINE L1 -916 5240 5370 2123 100 14 7 chr1 54886203 54886522 -227307142 + AluSq SINE Alu 1 321 0 812 252 113 88 chr1 54886522 54886612 -227307052 - L1MC4a LINE L1 -785 5371 5285 656 271 156 41 chr1 54886948 54887262 -227306402 + MLT1J2 LTR MaLR 101 450 0 368 235 66 44 chr1 54887381 54887517 -227306147 + L2 LINE L2 3175 3313 0 540 259 14 14 chr1 54888171 54888314 -227305350 - MIR SINE MIR -99 163 21 769 171 8 0 chr1 54888780 54888903 -227304761 - FLAM_C SINE Alu -18 125 2 195 307 60 76 chr1 54889097 54889348 -227304316 + L2 LINE L2 2849 3095 -177 603 277 98 36 chr1 54889401 54889708 -227303956 - L2 LINE L2 0 3313 2988 324 281 0 0 chr1 54889733 54889815 -227303849 + L1M2 LINE L1 2471 2552 -4297 464 115 0 13 chr1 54889827 54889905 -227303759 + (GGGGA)n Simple_repeat Simple_repeat 5 81 0 706 213 0 16 chr1 54889940 54890123 -227303541 + GA-rich Low_complexity Low_complexity 1 180 0 298 335 173 4 chr1 54890160 54890432 -227303232 - L2 LINE L2 -367 2947 2630 1220 153 0 5 chr1 54890451 54890641 -227303023 - Tigger3b DNA MER2_type 0 1232 1044 1516 159 4 0 chr1 54890654 54890880 -227302784 + AluSx SINE Alu 1 227 -85 227 209 0 0 chr1 54890891 54890934 -227302730 - Alu SINE Alu -124 179 137 * 237 118 0 0 chr1 54890901 54890935 -227302729 - Alu SINE Alu -268 34 1 * 4536 131 35 12 chr1 54890935 54891707 -227301957 - Tigger3b DNA MER2_type -440 791 2 514 286 91 50 chr1 54891804 54892266 -227301398 - L2 LINE L2 -851 2463 1983 321 356 34 0 chr1 54892264 54892382 -227301282 + L2 LINE L2 3151 3272 0 * 413 207 286 15 chr1 54892490 54892693 -227300971 - MIR SINE MIR 0 262 5 250 336 16 23 chr1 54893304 54893432 -227300232 + MIR SINE MIR 20 146 -62 193 323 134 8 chr1 54893812 54893939 -227299725 - MIR SINE MIR -71 191 49 274 320 86 8 chr1 54894393 54894521 -227299143 + MIR3 SINE MIR 56 193 -15 279 263 34 25 chr1 54894923 54895041 -227298623 + CT-rich Low_complexity Low_complexity 2 120 0 421 331 51 54 chr1 54895167 54895349 -227298315 - L2 LINE L2 -218 3054 2873 2043 140 0 0 chr1 54895349 54895641 -227298023 + AluSc SINE Alu 1 292 -17 421 331 51 54 chr1 54895641 54895941 -227297723 - L2 LINE L2 -399 2873 2595 1814 130 36 4 chr1 54895983 54896101 -227297563 + AluSx SINE Alu 1 114 -198 269 26 26 0 chr1 54896101 54896139 -227297525 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1814 130 36 4 chr1 54896139 54896332 -227297332 + AluSx SINE Alu 114 312 0 266 356 48 0 chr1 54897248 54897352 -227296312 - MIR3 SINE MIR -97 111 3 393 348 105 48 chr1 54897463 54897883 -227295781 + L2 LINE L2 2829 3272 0 278 240 16 80 chr1 54898692 54898817 -227294847 + MIR3 SINE MIR 89 205 -3 254 167 9 176 chr1 54898874 54898982 -227294682 + L2 LINE L2 2607 2696 -618 364 323 109 14 chr1 54899052 54899268 -227294396 + MIR SINE MIR 7 247 -15 567 162 234 18 chr1 54899328 54899495 -227294169 - MER3 DNA MER1_type 0 209 7 2048 131 0 3 chr1 54899495 54899778 -227293886 + AluSx SINE Alu 1 282 -30 460 281 62 6 chr1 54900012 54900172 -227293492 - MIR SINE MIR -37 225 57 549 44 0 0 chr1 54900703 54900771 -227292893 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 339 252 41 16 chr1 54901071 54901194 -227292470 - MIR SINE MIR -56 206 81 331 317 59 68 chr1 54901342 54901587 -227292077 + L2 LINE L2 2658 2908 -364 1821 164 0 10 chr1 54901587 54901880 -227291784 - AluJo SINE Alu -20 292 3 331 317 59 68 chr1 54901880 54902026 -227291638 + L2 LINE L2 2908 3054 -218 351 308 53 13 chr1 54902093 54902273 -227291391 + MIR SINE MIR 6 197 -64 340 253 147 0 chr1 54902372 54902467 -227291197 + L2 LINE L2 3137 3245 -27 328 189 126 32 chr1 54903624 54903719 -227289945 + MIR SINE MIR 124 227 -35 403 290 97 6 chr1 54903769 54903945 -227289719 - MIR SINE MIR -70 192 1 389 281 46 115 chr1 54904340 54904600 -227289064 - L2 LINE L2 0 3272 3031 467 249 134 47 chr1 54904710 54905011 -227288653 - HAL1b LINE L1 -51 1297 957 2191 113 0 0 chr1 54905011 54905303 -227288361 + AluSx SINE Alu 1 292 -20 467 249 134 47 chr1 54905303 54905366 -227288298 - HAL1b LINE L1 -391 957 901 357 229 84 0 chr1 54905370 54905453 -227288211 - MIR SINE MIR -128 134 45 193 262 16 16 chr1 54905503 54905564 -227288100 - MIR SINE MIR -63 145 85 566 266 63 66 chr1 54905680 54905988 -227287676 + MLT1I LTR MaLR 99 369 -40 460 263 68 0 chr1 54906439 54906572 -227287092 + MIR3 SINE MIR 66 207 -1 486 224 171 26 chr1 54907905 54907916 -227285748 + MER5A DNA MER1_type 9 17 -172 1721 161 19 56 chr1 54907916 54908294 -227285370 - MLT1A1 LTR MaLR -1 364 1 486 224 171 26 chr1 54908294 54908434 -227285230 + MER5A DNA MER1_type 17 182 -7 232 271 85 42 chr1 54908482 54908600 -227285064 - MIR3 SINE MIR -32 176 54 288 263 59 17 chr1 54908712 54908830 -227284834 + MIR SINE MIR 91 213 -49 193 329 73 0 chr1 54909085 54909167 -227284497 + L2 LINE L2 3137 3224 -48 219 261 0 0 chr1 54909183 54909252 -227284412 + GA-rich Low_complexity Low_complexity 2 70 0 334 292 102 29 chr1 54910148 54910246 -227283418 + MIR SINE MIR 37 126 -136 800 197 0 0 chr1 54910246 54910378 -227283286 + FLAM_C SINE Alu 1 132 -1 334 292 102 29 chr1 54910378 54910452 -227283212 + MIR SINE MIR 126 216 -46 293 321 38 31 chr1 54910563 54910722 -227282942 + MIR3 SINE MIR 43 202 -6 193 277 15 15 chr1 54911260 54911325 -227282339 + MIR SINE MIR 30 94 -114 259 375 42 21 chr1 54911341 54911485 -227282179 - L2 LINE L2 -1 3271 3125 324 241 241 9 chr1 54911556 54911668 -227281996 + MIR SINE MIR 117 254 -8 1559 135 67 46 chr1 54912440 54912722 -227280942 - AluJo SINE Alu -24 288 1 370 216 130 142 chr1 54912900 54913154 -227280510 - MIR SINE MIR -1 261 11 235 258 0 15 chr1 54913389 54913455 -227280209 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 679 244 154 32 chr1 54913654 54914064 -227279600 - L1ME4a LINE L1 -46 6075 5616 436 296 53 49 chr1 54914250 54914497 -227279167 + L2 LINE L2 2836 3083 -189 2451 91 0 0 chr1 54914635 54914943 -227278721 - AluSx SINE Alu -4 308 1 470 254 189 31 chr1 54914963 54915190 -227278474 - MIR SINE MIR 0 262 14 208 289 268 0 chr1 54915265 54915362 -227278302 + L2 LINE L2 3150 3272 0 280 330 89 0 chr1 54916527 54916639 -227277025 - L2 LINE L2 -15 3257 3136 297 0 0 0 chr1 54917049 54917082 -227276582 + (TG)n Simple_repeat Simple_repeat 1 33 0 916 171 25 6 chr1 54917087 54917245 -227276419 - AluJo SINE Alu -32 280 120 483 18 0 0 chr1 54917250 54917306 -227276358 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 189 175 0 0 chr1 54917306 54917346 -227276318 + CT-rich Low_complexity Low_complexity 2 41 0 762 175 0 0 chr1 54917347 54917473 -227276191 - FLAM_C SINE Alu 0 143 18 218 231 154 39 chr1 54917534 54917638 -227276026 - L2 LINE L2 -12 3301 3186 257 308 39 0 chr1 54917742 54917820 -227275844 - MIR SINE MIR -73 189 109 191 318 23 47 chr1 54918716 54918845 -227274819 - MIR3 SINE MIR -12 196 71 260 279 27 14 chr1 54919485 54919632 -227274032 + (TG)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chr1 54919676 54919697 -227273967 + AT_rich Low_complexity Low_complexity 1 21 0 255 256 26 43 chr1 54920085 54920202 -227273462 + L2 LINE L2 2594 2708 -606 212 159 175 16 chr1 54920223 54920286 -227273378 - L2 LINE L2 0 3313 3241 216 305 0 0 chr1 54920422 54920481 -227273183 - L2 LINE L2 -850 2464 2406 195 328 67 8 chr1 54921093 54921212 -227272452 + L2 LINE L2 3136 3261 -11 202 283 30 30 chr1 54922113 54922212 -227271452 - L2 LINE L2 -1 3271 3173 344 284 227 8 chr1 54922770 54923097 -227270567 + L2 LINE L2 2628 3035 -237 195 210 81 48 chr1 54923146 54923208 -227270456 + L2 LINE L2 3118 3181 -91 2122 121 0 10 chr1 54923563 54923853 -227269811 - AluSx SINE Alu -25 287 1 458 209 0 11 chr1 54923879 54923970 -227269694 + MER94 DNA DNA 12 101 -33 244 281 49 12 chr1 54925711 54925793 -227267871 - L3 LINE CR1 -118 1459 1375 225 273 13 0 chr1 54926318 54926395 -227267269 + MLT1K LTR MaLR 509 586 -2 558 242 7 26 chr1 54926858 54927011 -227266653 - MIR SINE MIR -12 250 101 332 317 148 5 chr1 54927100 54927302 -227266362 + L2 LINE L2 2435 2665 -649 243 301 9 53 chr1 54927698 54927811 -227265853 + MIR SINE MIR 42 149 -59 560 264 32 47 chr1 54928052 54928329 -227265335 - L1ME4a LINE L1 -236 5885 5613 563 280 129 22 chr1 54928494 54928726 -227264938 - MIR SINE MIR -3 259 3 275 329 12 12 chr1 54928905 54928987 -227264677 - MIR SINE MIR -161 101 20 292 350 44 29 chr1 54929097 54929234 -227264430 - L2 LINE L2 -8 3264 3126 189 233 0 23 chr1 54929458 54929501 -227264163 + MIR SINE MIR 29 70 -138 483 324 62 5 chr1 54930213 54930423 -227263241 - L3 LINE CR1 -63 1514 1293 234 332 72 52 chr1 54930468 54930661 -227263003 + MIR SINE MIR 52 248 -14 453 320 37 86 chr1 54930713 54930982 -227262682 + L2 LINE L2 3012 3267 -5 309 399 59 0 chr1 54930993 54931196 -227262468 - MIR SINE MIR -46 216 2 388 308 77 2 chr1 54931485 54931667 -227261997 + MIR3 SINE MIR 8 202 -6 293 290 20 30 chr1 54931856 54931956 -227261708 - L2 LINE L2 -255 3017 2919 337 299 51 58 chr1 54932438 54932575 -227261089 + L2 LINE L2 3137 3272 0 431 258 82 31 chr1 54932664 54932823 -227260841 - MIR SINE MIR -49 213 47 402 277 10 10 chr1 54933641 54933742 -227259922 + MIR SINE MIR 1 101 -161 406 288 27 9 chr1 54933744 54933855 -227259809 + L2 LINE L2 3137 3249 -23 387 265 77 17 chr1 54933865 54933982 -227259682 - MIR SINE MIR -136 126 3 241 301 14 14 chr1 54934265 54934338 -227259326 - MER91A DNA MER1_type -123 73 1 405 285 23 2 chr1 54934675 54934808 -227258856 - MIR3 SINE MIR -25 183 48 642 265 105 9 chr1 54935062 54935281 -227258383 + MIR SINE MIR 23 262 0 445 301 58 6 chr1 54935383 54935539 -227258125 - MER91A DNA MER1_type -12 184 21 524 205 49 78 chr1 54935626 54935803 -227257861 + MIR SINE MIR 16 183 -62 269 264 14 0 chr1 54936283 54936355 -227257309 + MIR SINE MIR 190 262 0 466 300 98 65 chr1 54936383 54936690 -227256974 + L2 LINE L2 2946 3262 -10 202 320 50 33 chr1 54936823 54937004 -227256660 - L2 LINE L2 -411 2903 2720 436 255 1 44 chr1 54937440 54937578 -227256086 + MIR SINE MIR 52 184 -77 185 296 17 61 chr1 54937585 54937700 -227255964 + L3 LINE CR1 864 973 -604 625 266 96 11 chr1 54937737 54937925 -227255739 + MIR SINE MIR 58 261 -1 677 268 68 61 chr1 54937953 54938349 -227255315 + L3 LINE CR1 1078 1476 -101 378 0 0 0 chr1 54938673 54938715 -227254949 + (TG)n Simple_repeat Simple_repeat 1 42 0 390 311 8 16 chr1 54938931 54939053 -227254611 + MIR SINE MIR 90 210 -52 273 291 47 0 chr1 54939147 54939233 -227254431 + L2 LINE L2 3171 3260 -12 1809 166 15 6 chr1 54940209 54940540 -227253124 - L1MB3 LINE L1 -11 6172 5839 234 249 17 0 chr1 54940785 54940853 -227252811 + MIR SINE MIR 84 143 -65 535 271 126 36 chr1 54941220 54941497 -227252167 - L2 LINE L2 -15 3298 2997 635 272 138 5 chr1 54941963 54942187 -227251477 - MIR SINE MIR -6 256 3 473 135 11 0 chr1 54942604 54942693 -227250971 + CT-rich Low_complexity Low_complexity 1 90 0 596 203 29 7 chr1 54942941 54943079 -227250585 - MER103 DNA DNA -15 151 11 184 288 17 0 chr1 54943154 54943213 -227250451 + MIR3 SINE MIR 148 207 -1 217 263 93 51 chr1 54943420 54943538 -227250126 - MIR3 SINE MIR 0 208 86 374 241 138 17 chr1 54943924 54944040 -227249624 + MIR3 SINE MIR 13 142 -66 401 318 89 100 chr1 54944055 54944219 -227249445 - L2 LINE L2 -2 3270 3106 967 191 0 0 chr1 54944219 54944376 -227249288 + FRAM SINE Alu 5 161 -5 401 318 89 100 chr1 54944376 54944661 -227249003 - L2 LINE L2 -166 3106 2826 266 205 313 24 chr1 54944787 54944870 -227248794 + MIR SINE MIR 72 178 -84 409 230 68 16 chr1 54945133 54945286 -227248378 - MIR SINE MIR -80 128 19 181 344 0 0 chr1 54946065 54946126 -227247538 - MIR SINE MIR -63 145 85 185 330 199 16 chr1 54946345 54946536 -227247128 + L2 LINE L2 2550 2775 -539 270 81 0 0 chr1 54947461 54947498 -227246166 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 243 270 174 17 chr1 54947631 54947746 -227245918 + MIR SINE MIR 47 179 -83 340 311 163 0 chr1 54947960 54948095 -227245569 + MIR3 SINE MIR 47 203 -5 196 310 35 0 chr1 54948447 54948505 -227245159 + L2 LINE L2 3209 3268 -4 2153 140 20 3 chr1 54948795 54949152 -227244512 + L1PA16 LINE L1 5804 6166 0 655 251 96 11 chr1 54949234 54949421 -227244243 + MIR SINE MIR 7 209 -53 437 365 15 0 chr1 54950061 54950198 -227243466 + L2 LINE L2 3134 3272 0 248 347 95 0 chr1 54950247 54950376 -227243288 - MIR SINE MIR -62 146 20 241 200 133 27 chr1 54950737 54950812 -227242852 - MIR SINE MIR -55 153 71 300 53 0 0 chr1 54950994 54951032 -227242632 + (TG)n Simple_repeat Simple_repeat 2 39 0 299 313 20 0 chr1 54951149 54951248 -227242416 + MIR SINE MIR 16 116 -92 395 287 79 30 chr1 54951334 54951536 -227242128 - MIR SINE MIR -22 240 29 669 295 21 10 chr1 54951992 54952185 -227241479 - MIR SINE MIR -12 250 56 370 289 88 0 chr1 54952858 54952972 -227240692 + MIR SINE MIR 20 143 -65 256 250 43 65 chr1 54953048 54953140 -227240524 + MIR SINE MIR 7 96 -112 242 242 76 0 chr1 54953165 54953231 -227240433 - MIR SINE MIR -72 190 120 252 274 68 42 chr1 54953437 54953667 -227239997 - L2 LINE L2 -255 3017 2782 180 244 49 0 chr1 54953807 54953848 -227239816 + MIR SINE MIR 102 144 -118 299 286 85 50 chr1 54954102 54954310 -227239354 + MIR SINE MIR 18 228 -34 373 288 234 11 chr1 54954365 54954549 -227239115 - MIR SINE MIR -10 252 28 180 111 0 0 chr1 54955080 54955107 -227238557 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 411 294 65 37 chr1 54955657 54955871 -227237793 + MIR SINE MIR 35 254 -8 415 251 176 37 chr1 54955916 54956103 -227237561 - MIR SINE MIR -12 250 38 1380 267 113 39 chr1 54956107 54956823 -227236841 + L1MEc LINE L1 75 843 -5553 234 357 63 16 chr1 54957451 54957577 -227236087 + L2 LINE L2 3182 3313 0 519 265 40 7 chr1 54957622 54957773 -227235891 - MIR SINE MIR -64 198 43 202 250 0 19 chr1 54958741 54958793 -227234871 - L2 LINE L2 0 3313 3263 687 231 54 0 chr1 54958795 54958942 -227234722 - MIR SINE MIR -107 155 1 851 286 52 20 chr1 54958984 54959232 -227234432 - MIR SINE MIR -5 257 2 2399 202 60 24 chr1 54959259 54959794 -227233870 + MLT1F1 LTR MaLR 6 559 -8 297 0 0 0 chr1 54960163 54960196 -227233468 + (TTG)n Simple_repeat Simple_repeat 1 33 0 441 331 59 19 chr1 54960414 54960824 -227232840 + L2 LINE L2 2614 3043 -229 468 289 23 8 chr1 54961270 54961398 -227232266 + MIR SINE MIR 41 170 -92 934 224 5 36 chr1 54961488 54961711 -227231953 - MER20 DNA MER1_type -2 217 2 321 292 23 15 chr1 54962398 54962528 -227231136 - MIR3 SINE MIR -7 201 71 449 290 196 16 chr1 54962975 54963358 -227230306 - LTR16A1 LTR ERVL -3 454 3 200 308 176 0 chr1 54963450 54963541 -227230123 - L2 LINE L2 -8 3264 3158 530 302 93 19 chr1 54963602 54963817 -227229847 + MIR SINE MIR 14 244 -18 208 296 0 0 chr1 54963834 54963888 -227229776 - MIR3 SINE MIR -38 170 117 * 274 268 155 0 chr1 54963887 54963984 -227229680 + L2 LINE L2 3189 3300 -13 303 232 105 48 chr1 54964842 54964990 -227228674 + MLT1G1 LTR MaLR 419 595 0 183 148 0 0 chr1 54965067 54965094 -227228570 - MIR SINE MIR -18 244 218 181 322 0 0 chr1 54965148 54965207 -227228457 - MIR SINE MIR -153 109 51 252 235 78 113 chr1 54966489 54966604 -227227060 - MIR SINE MIR -132 130 20 1034 213 33 0 chr1 54966734 54966945 -227226719 + MIR SINE MIR 45 262 0 183 283 77 120 chr1 54966950 54967183 -227226481 + L2 LINE L2 2995 3217 -55 190 340 0 0 chr1 54967928 54967981 -227225683 - MIR SINE MIR -82 126 74 27 0 0 0 chr1 54968088 54968115 -227225549 + AT_rich Low_complexity Low_complexity 1 27 0 714 288 74 4 chr1 54968506 54968735 -227224929 + MIR SINE MIR 8 252 -10 336 218 50 106 chr1 54968922 54969101 -227224563 + MER5B DNA MER1_type 4 172 -6 360 265 20 0 chr1 54969117 54969219 -227224445 + MIR3 SINE MIR 84 187 -21 214 286 32 0 chr1 54969641 54969704 -227223960 - MIR SINE MIR -18 244 180 285 300 12 118 chr1 54971148 54971318 -227222346 - L2 LINE L2 -91 3181 3030 334 198 27 81 chr1 54971427 54971538 -227222126 + MIR SINE MIR 6 110 -152 485 263 80 7 chr1 54971719 54971856 -227221808 - MIR SINE MIR -71 191 45 192 250 94 73 chr1 54972124 54972220 -227221444 + L2 LINE L2 3211 3308 -5 403 330 10 65 chr1 54973069 54973269 -227220395 + MER5A DNA MER1_type 1 189 0 345 296 65 53 chr1 54973310 54973479 -227220185 + MIR SINE MIR 81 251 -11 2012 136 30 67 chr1 54974029 54974434 -227219230 + MLT1B LTR MaLR 1 390 0 232 182 23 0 chr1 54974508 54974552 -227219112 + MIR SINE MIR 118 162 -100 1724 138 60 3 chr1 54974570 54974852 -227218812 - AluJo SINE Alu -14 298 1 320 328 142 0 chr1 54975176 54975310 -227218354 + MIR SINE MIR 3 155 -107 183 278 68 90 chr1 54976073 54976206 -227217458 + L3 LINE CR1 1348 1477 -100 403 232 39 97 chr1 54977235 54977442 -227216222 - Charlie8 DNA MER1_type -2177 240 46 302 301 127 30 chr1 54977724 54977890 -227215774 + MIR SINE MIR 72 253 -9 427 243 63 0 chr1 54978077 54978188 -227215476 - MIR SINE MIR -48 214 97 * 450 211 143 15 chr1 54978185 54978318 -227215346 - MIR SINE MIR -55 207 58 430 254 98 106 chr1 54978318 54978593 -227215071 + L2 LINE L2 2997 3269 -3 268 337 0 23 chr1 54978614 54978700 -227214964 + L2 LINE L2 3188 3271 -1 235 267 13 13 chr1 54978708 54978783 -227214881 + GA-rich Low_complexity Low_complexity 4 78 0 338 301 7 59 chr1 54978862 54978998 -227214666 + MIR3 SINE MIR 46 174 -34 343 221 67 39 chr1 54979764 54979868 -227213796 + MIR SINE MIR 45 151 -57 644 271 194 18 chr1 54979927 54980263 -227213401 + L2 LINE L2 2914 3308 -5 288 200 0 0 chr1 54980267 54980332 -227213332 + GA-rich Low_complexity Low_complexity 2 66 0 1160 104 85 25 chr1 54981192 54981393 -227212271 + AluSg/x SINE Alu 100 312 0 722 161 7 0 chr1 54981535 54981690 -227211974 + CT-rich Low_complexity Low_complexity 3 158 0 300 246 0 0 chr1 54981745 54981802 -227211862 - LTR16A1 LTR ERVL -372 85 29 1043 161 6 11 chr1 54981902 54982082 -227211582 + AluSg/x SINE Alu 120 298 -14 344 302 16 0 chr1 54982610 54982736 -227210928 - MIR3 SINE MIR -12 196 69 729 141 82 151 chr1 54982969 54983045 -227210619 - MER33 DNA MER1_type -2302 283 203 2117 93 34 0 chr1 54983045 54983336 -227210328 + AluSx SINE Alu 1 301 -11 729 141 82 151 chr1 54983336 54983563 -227210101 - MER33 DNA MER1_type -2382 203 1 404 299 5 32 chr1 54985033 54985237 -227208427 - MIR SINE MIR 0 262 18 221 331 23 69 chr1 54985444 54985619 -227208045 - MIR3 SINE MIR -41 167 1 189 0 0 0 chr1 54986209 54986230 -227207434 + (A)n Simple_repeat Simple_repeat 1 21 0 350 273 24 115 chr1 54986496 54986705 -227206959 + MIR SINE MIR 49 238 -24 287 314 12 0 chr1 54986830 54986916 -227206748 - L2 LINE L2 0 3272 3186 206 336 79 61 chr1 54988097 54988326 -227205338 - L3 LINE CR1 -125 1452 1220 189 315 82 0 chr1 54988571 54988644 -227205020 - MIR3 SINE MIR -18 190 112 * 198 330 57 0 chr1 54988619 54988707 -227204957 - MIR SINE MIR -146 116 24 398 303 109 3 chr1 54989524 54989731 -227203933 - MIR SINE MIR -11 251 20 241 289 0 52 chr1 54990737 54990834 -227202830 - MIR SINE MIR -81 181 90 617 255 80 40 chr1 54990876 54991076 -227202588 - MIR SINE MIR -23 239 32 506 282 155 24 chr1 54991334 54991547 -227202117 + MIR SINE MIR 21 261 -1 1457 265 83 26 chr1 54991577 54992037 -227201627 + LTR16C LTR ERVL 1 486 -5 281 118 20 0 chr1 54992064 54992115 -227201549 + (TA)n Simple_repeat Simple_repeat 1 52 0 774 137 0 48 chr1 54992115 54992239 -227201425 - FLAM_C SINE Alu -13 120 3 498 267 109 38 chr1 54992874 54993084 -227200580 - MIR SINE MIR -18 244 20 337 258 60 33 chr1 54993426 54993588 -227200076 + MIR SINE MIR 3 169 -39 568 204 248 0 chr1 54993625 54993762 -227199902 - FAM SINE Alu -1 174 4 265 352 96 8 chr1 54993896 54994021 -227199643 - L2 LINE L2 -1 3271 3136 237 108 0 0 chr1 54994021 54994058 -227199606 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1877 130 7 14 chr1 54994436 54994757 -227198907 - AluSx SINE Alu 0 319 1 397 301 143 51 chr1 54995241 54995930 -227197734 + HAL1b LINE L1 67 453 -895 6763 132 39 44 chr1 54996057 54997289 -227196375 - Tigger3b DNA MER2_type -4 1227 2 28 48 0 0 chr1 54997357 54997399 -227196265 + AT_rich Low_complexity Low_complexity 1 42 0 774 324 29 0 chr1 54997578 54997822 -227195842 - MIR SINE MIR 0 262 12 300 341 74 22 chr1 54997876 54998146 -227195518 + L1M4 LINE L1 2290 2573 -3573 405 307 85 48 chr1 54998496 54998882 -227194782 + L1M4 LINE L1 2737 3213 -2933 227 196 20 0 chr1 54998889 54998940 -227194724 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 1831 155 0 0 chr1 54999173 54999497 -227194167 + AluJb SINE Alu 1 312 0 409 250 129 16 chr1 55000136 55000260 -227193404 - MIR SINE MIR -44 218 81 241 200 36 0 chr1 55000586 55000641 -227193023 - L2 LINE L2 -292 2980 2924 253 271 148 13 chr1 55001128 55001283 -227192381 + MIR3 SINE MIR 5 180 -28 191 308 115 13 chr1 55001361 55001439 -227192225 - L2 LINE L2 -5 3267 3182 812 241 8 84 chr1 55001707 55001746 -227191918 - MIR SINE MIR -3 259 219 2175 84 0 3 chr1 55001746 55002078 -227191586 - AluY SINE Alu 0 331 1 812 241 8 84 chr1 55002078 55002298 -227191366 - MIR SINE MIR -43 219 19 181 320 52 66 chr1 55002518 55002790 -227190874 - L2 LINE L2 -337 2977 2710 258 267 105 68 chr1 55003040 55003231 -227190433 + L2 LINE L2 2955 3152 -120 294 311 181 32 chr1 55003932 55004209 -227189455 + L2 LINE L2 2588 2905 -409 198 300 17 0 chr1 55004357 55004417 -227189247 - L2 LINE L2 -1 3271 3211 295 244 46 3 chr1 55004536 55004630 -227189034 + MIR SINE MIR 83 146 -62 201 74 0 0 chr1 55004632 55004659 -227189005 + (TAA)n Simple_repeat Simple_repeat 1 27 0 214 324 29 0 chr1 55004660 55004728 -227188936 - MIR SINE MIR -17 245 176 189 273 0 0 chr1 55005081 55005125 -227188539 + MER5C DNA MER1_type 14 57 -267 392 286 104 41 chr1 55005203 55005472 -227188192 - L2 LINE L2 -23 3249 2964 191 350 80 0 chr1 55005477 55005577 -227188087 - L2 LINE L2 -2922 392 285 315 330 0 10 chr1 55006024 55006121 -227187543 - MIR SINE MIR -78 184 89 661 299 48 53 chr1 55006472 55006886 -227186778 + L2 LINE L2 2393 2804 -510 284 349 79 21 chr1 55007068 55007309 -227186355 - L2 LINE L2 -92 3221 2967 243 296 14 0 chr1 55007524 55007595 -227186069 - L2 LINE L2 0 3313 3242 244 261 65 87 chr1 55007595 55007733 -227185931 + L2 LINE L2 3137 3271 -1 271 265 274 17 chr1 55008437 55008554 -227185110 + MIR SINE MIR 25 171 -91 183 289 60 24 chr1 55008960 55009043 -227184621 - L2 LINE L2 -49 3223 3138 359 342 25 6 chr1 55009490 55009648 -227184016 - L1ME1 LINE L1 -221 5945 5785 183 156 0 0 chr1 55009660 55009692 -227183972 + (CGTG)n Simple_repeat Simple_repeat 4 35 0 214 200 0 0 chr1 55009840 55009885 -227183779 + L2 LINE L2 3216 3260 -12 430 305 28 23 chr1 55009911 55010088 -227183576 + MIR SINE MIR 20 197 -65 248 268 227 32 chr1 55011541 55011761 -227181903 + L2 LINE L2 2590 2852 -462 671 304 92 0 chr1 55011831 55012058 -227181606 - MIR SINE MIR 0 262 15 186 301 136 54 chr1 55012278 55012557 -227181107 - L2 LINE L2 -45 3227 2926 839 229 119 13 chr1 55012572 55012799 -227180865 + MIR SINE MIR 7 257 -5 210 214 171 57 chr1 55012810 55012880 -227180784 + L2 LINE L2 3194 3271 -1 190 250 25 0 chr1 55013054 55013094 -227180570 - L2 LINE L2 -226 3046 3006 373 182 156 0 chr1 55014021 55014098 -227179566 - L2 LINE L2 0 3313 3225 489 223 38 64 chr1 55014346 55014503 -227179161 + L3 LINE CR1 754 906 -671 236 315 12 85 chr1 55014586 55014751 -227178913 - MIR SINE MIR -99 163 11 182 319 213 0 chr1 55014930 55015024 -227178640 + L3 LINE CR1 1049 1162 -415 680 270 49 11 chr1 55015057 55015242 -227178422 - MIR SINE MIR -51 211 20 677 259 179 14 chr1 55015305 55015602 -227178062 + L3 LINE CR1 1231 1576 -1 425 276 76 27 chr1 55016341 55016526 -227177138 - MIR SINE MIR -59 203 10 324 291 71 31 chr1 55017417 55017544 -227176120 + MER5A DNA MER1_type 57 188 -1 305 230 48 79 chr1 55017794 55017920 -227175744 + MIR SINE MIR 47 168 -94 324 251 215 10 chr1 55018118 55018279 -227175385 - MIR SINE MIR -56 206 21 214 132 19 57 chr1 55018623 55018676 -227174988 + MIR SINE MIR 186 236 -26 197 242 105 42 chr1 55018687 55018782 -227174882 - MIR SINE MIR -64 198 98 363 295 126 33 chr1 55018957 55019140 -227174524 - MIR SINE MIR -59 203 4 340 300 108 0 chr1 55019450 55019580 -227174084 - L3 LINE CR1 -246 1331 1188 982 273 93 44 chr1 55020466 55021059 -227172605 - L1ME3A LINE L1 -214 5956 5432 321 250 12 36 chr1 55021355 55021439 -227172225 + L2 LINE L2 3191 3272 0 230 307 73 66 chr1 55021525 55021662 -227172002 + MIR SINE MIR 82 219 -43 226 356 22 11 chr1 55021681 55021771 -227171893 - MIR3 SINE MIR -15 193 103 237 319 86 17 chr1 55022497 55022613 -227171051 + MIR3 SINE MIR 81 204 -4 219 246 16 49 chr1 55023488 55023549 -227170115 + MIR SINE MIR 56 114 -94 291 355 62 72 chr1 55023577 55024513 -227169151 - L2 LINE L2 -120 3152 2225 * 341 216 417 19 chr1 55024512 55024874 -227168790 - L2 LINE L2 0 3313 2808 475 334 186 28 chr1 55024948 55025817 -227167847 - L2 LINE L2 -1153 2161 1155 216 319 121 14 chr1 55025833 55025974 -227167690 - MIR SINE MIR -63 145 11 * 415 256 34 34 chr1 55025959 55026076 -227167588 - L2 LINE L2 -1 3271 3155 199 267 33 0 chr1 55026406 55026466 -227167198 + MIR SINE MIR 49 110 -152 343 328 160 3 chr1 55026469 55026925 -227166739 + L2 LINE L2 2511 3091 -222 950 200 36 10 chr1 55027075 55027270 -227166394 + MIR SINE MIR 13 212 -50 239 402 60 0 chr1 55027410 55027527 -227166137 + L2 LINE L2 3161 3284 -29 579 175 48 0 chr1 55027548 55027714 -227165950 + GA-rich Low_complexity Low_complexity 4 177 0 423 304 73 98 chr1 55027906 55028314 -227165350 + L2 LINE L2 2871 3268 -4 574 291 50 20 chr1 55028741 55028940 -227164724 - MIR SINE MIR -2 260 56 532 167 8 129 chr1 55029085 55029147 -227164517 - MER5B DNA MER1_type -2 176 137 2219 99 0 10 chr1 55029147 55029459 -227164205 + AluSc SINE Alu 1 309 0 532 167 8 129 chr1 55029459 55029528 -227164136 - MER5B DNA MER1_type -41 137 61 182 317 0 0 chr1 55029520 55029561 -227164103 + MER5B DNA MER1_type 138 178 0 * 322 276 57 9 chr1 55029607 55029712 -227163952 + MIR3 SINE MIR 93 202 -6 494 280 74 44 chr1 55030943 55031188 -227162476 - MIR SINE MIR -7 255 2 489 279 49 0 chr1 55031679 55031862 -227161802 + MIR SINE MIR 18 209 -53 358 344 41 31 chr1 55032423 55032618 -227161046 + MIR3 SINE MIR 9 205 -3 237 220 77 66 chr1 55032925 55033016 -227160648 - GSAT Satellite centromeric -49 168 77 441 279 27 7 chr1 55033411 55033558 -227160106 - MIR3 SINE MIR -24 184 35 250 271 106 0 chr1 55034272 55034357 -227159307 + L2 LINE L2 3174 3267 -5 214 93 23 23 chr1 55034551 55034594 -227159070 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 248 258 135 22 chr1 55036335 55036424 -227157240 + L2 LINE L2 3173 3271 -1 250 339 98 9 chr1 55037196 55037308 -227156356 + L2 LINE L2 3132 3253 -19 274 344 25 37 chr1 55037614 55037855 -227155809 + L2 LINE L2 2823 3060 -212 184 289 113 10 chr1 55038227 55038324 -227155340 + MIR SINE MIR 98 204 -58 244 323 94 0 chr1 55038447 55038543 -227155121 + L2 LINE L2 3182 3286 -27 287 237 183 32 chr1 55038818 55038911 -227154753 + MIR SINE MIR 40 146 -62 203 288 17 0 chr1 55040492 55040551 -227153113 - L2 LINE L2 -1 3271 3212 317 282 207 11 chr1 55041374 55041548 -227152116 + L2 LINE L2 3105 3312 -1 242 260 150 10 chr1 55041596 55041696 -227151968 - MIR SINE MIR -142 120 7 207 333 35 21 chr1 55042434 55042575 -227151089 + L2 LINE L2 2818 2960 -312 539 332 5 19 chr1 55042831 55043036 -227150628 + L3 LINE CR1 1374 1575 -2 272 241 12 60 chr1 55043217 55043300 -227150364 + MIR3 SINE MIR 93 171 -37 310 238 24 12 chr1 55043586 55043670 -227149994 + MIR SINE MIR 46 130 -132 366 306 32 19 chr1 55044573 55044730 -227148934 + L3 LINE CR1 203 361 -1216 603 250 27 81 chr1 55044834 55044906 -227148758 - MIR SINE MIR -9 253 179 2452 56 3 0 chr1 55044906 55045194 -227148470 - AluSc SINE Alu -20 289 1 603 250 27 81 chr1 55045194 55045381 -227148283 - MIR SINE MIR -83 179 8 221 274 21 53 chr1 55045419 55045514 -227148150 - MIR SINE MIR -128 134 43 330 247 11 11 chr1 55046522 55046611 -227147053 + L2 LINE L2 3184 3272 0 186 143 0 0 chr1 55047197 55047232 -227146432 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 289 231 51 13 chr1 55048059 55048137 -227145527 - MIR SINE MIR -113 149 69 259 163 0 0 chr1 55048265 55048314 -227145350 - MIR SINE MIR -104 158 110 * 451 315 8 110 chr1 55048313 55048678 -227144986 + L2 LINE L2 2940 3267 -5 183 80 0 0 chr1 55048692 55048717 -227144947 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 211 302 0 0 chr1 55048726 55048779 -227144885 - MIR SINE MIR -167 95 43 182 390 10 0 chr1 55049618 55049718 -227143946 + MIR3 SINE MIR 2 102 -106 386 225 0 134 chr1 55051517 55051659 -227142005 - MIR3 SINE MIR -1 207 85 399 304 82 32 chr1 55052087 55052245 -227141419 - MIR3 SINE MIR -11 197 32 205 167 0 0 chr1 55052537 55052573 -227141091 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 242 302 94 0 chr1 55052683 55052789 -227140875 + L2 LINE L2 3139 3254 -18 342 291 55 11 chr1 55054186 55054368 -227139296 - MIR3 SINE MIR -5 203 14 432 82 0 0 chr1 55054761 55054822 -227138842 + (TG)n Simple_repeat Simple_repeat 2 62 0 218 287 35 11 chr1 55055081 55055168 -227138496 + MIR SINE MIR 162 250 -12 288 0 0 0 chr1 55055247 55055279 -227138385 + (CAA)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr1 55055617 55055641 -227138023 + (TG)n Simple_repeat Simple_repeat 1 24 0 339 283 52 35 chr1 55056387 55056560 -227137104 + MIR SINE MIR 73 248 -14 392 262 64 21 chr1 55056775 55056929 -227136735 + MIR SINE MIR 14 172 -62 4059 159 20 32 chr1 55057443 55058250 -227135414 + L1MB7 LINE L1 5372 6168 -16 340 309 74 43 chr1 55058262 55058492 -227135172 - MIR SINE MIR -12 250 14 500 307 101 14 chr1 55059258 55059497 -227134167 + MIR SINE MIR 2 260 -2 328 115 0 0 chr1 55060038 55060090 -227133574 - L2 LINE L2 0 3313 3262 255 294 106 0 chr1 55060137 55060222 -227133442 - MIR SINE MIR -70 138 45 183 309 62 0 chr1 55061265 55061362 -227132302 + MIR3 SINE MIR 78 180 -28 405 0 0 0 chr1 55061673 55061718 -227131946 + (CA)n Simple_repeat Simple_repeat 2 46 0 493 291 146 5 chr1 55061851 55062064 -227131600 - MIR SINE MIR 0 262 20 451 264 174 35 chr1 55062086 55062396 -227131268 - L3 LINE CR1 -17 1560 1208 307 306 110 65 chr1 55062681 55063063 -227130601 + L2 LINE L2 2004 2402 -912 189 281 56 34 chr1 55064413 55064502 -227129162 - L2 LINE L2 -43 3229 3139 255 324 86 55 chr1 55064848 55065138 -227128526 - L2 LINE L2 -456 2858 2560 471 264 75 38 chr1 55066032 55066191 -227127473 + MIR SINE MIR 33 197 -65 187 200 29 129 chr1 55068073 55068143 -227125521 + MIR3 SINE MIR 114 176 -32 206 386 0 20 chr1 55068527 55068680 -227124984 + GA-rich Low_complexity Low_complexity 1 150 0 25 75 0 0 chr1 55069193 55069246 -227124418 + GC_rich Low_complexity Low_complexity 1 53 0 207 0 0 0 chr1 55069857 55069880 -227123784 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 522 70 0 0 chr1 55070494 55070565 -227123099 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 266 315 27 36 chr1 55070568 55070679 -227122985 - L2 LINE L2 -1 3271 3162 256 205 70 77 chr1 55070920 55071076 -227122588 + L1ME4a LINE L1 5963 6117 -4 256 348 190 11 chr1 55071618 55071992 -227121672 + L2 LINE L2 2832 3272 0 2509 81 0 0 chr1 55072063 55072372 -227121292 - AluSq SINE Alu -4 309 1 237 33 0 0 chr1 55072373 55072403 -227121261 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1687 77 0 34 chr1 55072404 55072637 -227121027 - L1PA7 LINE L1 -18 6136 5912 5037 89 1 0 chr1 55072637 55073319 -227120345 + L1P LINE L1 4491 5173 -973 394 269 185 37 chr1 55073949 55074247 -227119417 - L3 LINE CR1 -72 1505 1164 3023 138 28 10 chr1 55074957 55075465 -227118199 - L1MC1 LINE L1 0 6333 5817 321 336 45 8 chr1 55075852 55075986 -227117678 + MIR3 SINE MIR 2 140 -68 528 251 38 66 chr1 55076005 55076188 -227117476 - MER5B DNA MER1_type 0 178 1 282 268 0 0 chr1 55076280 55076351 -227117313 + MIR SINE MIR 74 144 -64 590 226 70 50 chr1 55076393 55076592 -227117072 + MIR SINE MIR 48 250 -12 23 33 0 0 chr1 55076608 55076638 -227117026 + AT_rich Low_complexity Low_complexity 1 30 0 499 245 100 65 chr1 55077422 55077712 -227115952 + L2 LINE L2 3014 3313 0 484 282 41 6 chr1 55078552 55078722 -227114942 - MIR SINE MIR -6 256 81 791 232 82 14 chr1 55079295 55079515 -227114149 - MIR SINE MIR 0 262 28 311 287 144 26 chr1 55080385 55080580 -227113084 + MIR SINE MIR 20 237 -25 306 253 0 42 chr1 55081122 55081217 -227112447 - L2 LINE L2 0 3272 3182 346 289 128 13 chr1 55081322 55081478 -227112186 - MIR SINE MIR -7 255 82 2364 67 0 3 chr1 55081650 55081933 -227111731 - AluY SINE Alu -18 293 12 339 259 37 44 chr1 55082834 55082969 -227110695 - MIR3 SINE MIR -5 203 70 2253 173 28 8 chr1 55082969 55083161 -227110503 + MSTD LTR MaLR 1 188 -208 760 160 56 0 chr1 55083161 55083286 -227110378 + FLAM_A SINE Alu 1 132 -1 2253 173 28 8 chr1 55083286 55083481 -227110183 + MSTD LTR MaLR 188 396 0 376 294 154 33 chr1 55083939 55084153 -227109511 + MIR SINE MIR 2 241 -21 310 270 80 10 chr1 55084205 55084305 -227109359 - L2 LINE L2 -2 3270 3164 1675 196 88 40 chr1 55084323 55084767 -227108897 + MLT1C LTR MaLR 1 465 -2 294 353 29 48 chr1 55084971 55085178 -227108486 - L2 LINE L2 -206 3066 2864 187 285 21 109 chr1 55085181 55085374 -227108290 + L2 LINE L2 2283 2458 -856 223 254 294 8 chr1 55085924 55086050 -227107614 - MIR SINE MIR -13 249 88 867 323 189 36 chr1 55086588 55087735 -227105929 + L2 LINE L2 1582 2904 -410 1444 156 48 54 chr1 55087785 55088018 -227105646 - L1MD2 LINE L1 0 6359 6127 2190 117 0 3 chr1 55088018 55088309 -227105355 - AluSx SINE Alu -22 290 1 1444 156 48 54 chr1 55088309 55088390 -227105274 - L1MD2 LINE L1 -232 6127 6047 501 374 62 38 chr1 55088392 55088732 -227104932 + L2 LINE L2 2881 3228 -44 2918 86 5 5 chr1 55089581 55089964 -227103700 - L1PB1 LINE L1 0 6867 6485 764 115 0 0 chr1 55089964 55090060 -227103604 - AluSx SINE Alu -23 289 194 1114 106 0 0 chr1 55090061 55090202 -227103462 - AluSx SINE Alu -172 141 1 11184 180 15 17 chr1 55090203 55093106 -227100558 - L1PB1 LINE L1 -365 6502 3606 6694 147 21 17 chr1 55093117 55094238 -227099426 - L1PB1 LINE L1 -5734 1129 4 433 326 91 66 chr1 55094348 55094885 -227098779 + L2 LINE L2 2680 3252 -20 234 333 0 21 chr1 55094911 55095004 -227098660 - MIR SINE MIR -4 258 168 220 226 177 16 chr1 55095413 55095475 -227098189 - MIR SINE MIR -112 150 79 225 286 155 0 chr1 55095574 55095658 -227098006 + L2 LINE L2 3136 3232 -40 211 271 17 0 chr1 55096050 55096109 -227097555 + MIR SINE MIR 48 107 -155 506 303 105 29 chr1 55096221 55096459 -227097205 + MIR SINE MIR 7 262 0 232 340 134 18 chr1 55096722 55096886 -227096778 - MIR3 SINE MIR -80 182 2 202 354 208 18 chr1 55097405 55097631 -227096033 - L2 LINE L2 0 3272 3004 283 333 0 0 chr1 55097989 55098082 -227095582 + MIR SINE MIR 62 154 -108 212 168 28 206 chr1 55098144 55098251 -227095413 + MIR3 SINE MIR 109 196 -12 264 387 102 16 chr1 55098652 55098965 -227094699 - L3 LINE CR1 -54 1523 1184 246 156 0 0 chr1 55099268 55099313 -227094351 + (TG)n Simple_repeat Simple_repeat 1 45 0 235 206 73 29 chr1 55099620 55099688 -227093976 + L2 LINE L2 3202 3272 0 333 301 19 0 chr1 55100494 55100597 -227093067 + MIR SINE MIR 53 157 -105 441 308 33 37 chr1 55100650 55100864 -227092800 - MIR SINE MIR -14 248 36 225 306 61 31 chr1 55101204 55101302 -227092362 + MIR SINE MIR 150 250 -12 211 189 0 0 chr1 55102478 55102515 -227091149 + (CTCA)n Simple_repeat Simple_repeat 1 37 0 467 273 55 43 chr1 55102811 55103024 -227090640 + MIR3 SINE MIR 3 262 0 329 206 22 65 chr1 55103063 55103155 -227090509 + MLT1I LTR MaLR 322 409 0 266 337 0 20 chr1 55103697 55103795 -227089869 - MIR SINE MIR -92 116 21 469 281 81 68 chr1 55104851 55104981 -227088683 - L2 LINE L2 0 3272 3136 4897 17 0 0 chr1 55104981 55105507 -227088157 + L1PA4 LINE L1 5630 6155 0 469 281 81 68 chr1 55105507 55105597 -227088067 - L2 LINE L2 -136 3136 3049 5872 106 77 0 chr1 55106709 55107616 -227086048 - L1MA5A LINE L1 -4 6293 5317 274 295 157 24 chr1 55107816 55107982 -227085682 + MIR SINE MIR 1 188 -74 423 0 0 0 chr1 55108429 55108476 -227085188 + (TG)n Simple_repeat Simple_repeat 2 48 0 205 102 34 34 chr1 55108478 55108537 -227085127 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 359 367 118 42 chr1 55109094 55109500 -227084164 - L2 LINE L2 0 3272 2836 322 244 42 76 chr1 55109731 55109850 -227083814 + MIR SINE MIR 30 144 -118 294 280 84 27 chr1 55110878 55111103 -227082561 + L1ME4a LINE L1 5648 5885 -236 401 306 60 118 chr1 55111493 55112010 -227081654 - L2 LINE L2 -200 3072 2578 252 314 20 10 chr1 55112001 55112103 -227081561 - MIR3 SINE MIR -8 200 98 * 355 335 80 9 chr1 55112174 55112386 -227081278 - L3 LINE CR1 -75 1502 1276 289 328 35 17 chr1 55112383 55112499 -227081165 - MIR SINE MIR -40 222 105 * 974 240 37 95 chr1 55112705 55113134 -227080530 + MLT2B1 LTR ERVL 1 385 -135 5692 134 14 4 chr1 55113138 55114129 -227079535 + L1PB4 LINE L1 5141 6145 -11 2485 215 78 7 chr1 55114146 55114846 -227078818 + L1ME2 LINE L1 5184 5933 -231 1066 210 31 5 chr1 55114834 55115058 -227078606 - L1M4 LINE L1 -1208 4938 4709 * 685 224 95 0 chr1 55115078 55115225 -227078439 + MLT2B1 LTR ERVL 358 518 -2 284 270 14 0 chr1 55115232 55115306 -227078358 - L3 LINE CR1 -551 1026 952 230 335 130 60 chr1 55115885 55116186 -227077478 + L2 LINE L2 2951 3272 0 230 291 114 13 chr1 55116252 55116331 -227077333 + MIR SINE MIR 106 192 -70 183 80 0 0 chr1 55116354 55116379 -227077285 + (TG)n Simple_repeat Simple_repeat 1 25 0 228 273 0 0 chr1 55116461 55116505 -227077159 + polypyrimidine Low_complexity Low_complexity 3 46 0 438 283 46 27 chr1 55117033 55117252 -227076412 + L3 LINE CR1 1114 1336 -241 588 306 47 0 chr1 55117253 55117446 -227076218 + MIR SINE MIR 42 243 -19 384 314 133 33 chr1 55117746 55118017 -227075647 + L2 LINE L2 3016 3313 0 360 0 0 0 chr1 55118566 55118606 -227075058 + (CA)n Simple_repeat Simple_repeat 1 40 0 1161 124 53 0 chr1 55118606 55118775 -227074889 + AluSc SINE Alu 130 307 -2 896 265 121 18 chr1 55118820 55119160 -227074504 + LTR33A LTR ERVL 149 523 0 180 111 0 0 chr1 55119478 55119505 -227074159 + (TG)n Simple_repeat Simple_repeat 2 28 0 558 255 126 39 chr1 55119689 55119920 -227073744 - MIR SINE MIR -10 252 2 311 300 123 15 chr1 55120640 55120770 -227072894 + MIR3 SINE MIR 3 146 -62 590 294 50 30 chr1 55120778 55120979 -227072685 - MIR SINE MIR 0 262 58 227 278 56 0 chr1 55121020 55121074 -227072590 + L2 LINE L2 3121 3177 -95 188 375 0 0 chr1 55121225 55121281 -227072383 - L2 LINE L2 -1 3271 3216 316 252 10 39 chr1 55121293 55121396 -227072268 + L1ME LINE L1 5616 5715 -406 898 271 111 18 chr1 55121417 55121760 -227071904 - L2 LINE L2 -1 3312 2938 255 98 0 0 chr1 55121777 55121818 -227071846 + MIR SINE MIR 82 122 -86 262 369 110 24 chr1 55121987 55122242 -227071422 + L2 LINE L2 2995 3271 -1 408 207 89 47 chr1 55122553 55122722 -227070942 - MIR SINE MIR -65 197 22 2493 211 43 37 chr1 55123155 55123672 -227069992 + MLT2B1 LTR ERVL 1 520 0 2380 213 37 39 chr1 55123674 55124322 -227069342 + MLT1-int LTR MaLR 6 879 -492 393 258 0 0 chr1 55124388 55124477 -227069187 + MLT-int LTR MaLR 679 767 -968 2270 200 13 22 chr1 55124499 55124960 -227068704 + MLT1A2-int LTR MaLR 1279 1735 0 1838 185 56 25 chr1 55124960 55125316 -227068348 + MLT1A2 LTR MaLR 1 367 -7 580 295 82 43 chr1 55125833 55126138 -227067526 - L2 LINE L2 0 3313 2997 188 265 0 20 chr1 55126501 55126550 -227067114 - L2 LINE L2 -542 2772 2725 475 254 43 14 chr1 55126593 55126731 -227066933 - L2 LINE L2 -662 2652 2511 263 320 97 10 chr1 55126723 55126826 -227066838 + MIR SINE MIR 18 129 -79 * 189 0 0 0 chr1 55126860 55126881 -227066783 + (A)n Simple_repeat Simple_repeat 1 21 0 247 179 36 36 chr1 55126901 55126957 -227066707 + MIR3 SINE MIR 152 207 -1 239 320 150 0 chr1 55127394 55127494 -227066170 - L2 LINE L2 0 3272 3158 239 147 26 35 chr1 55127498 55127614 -227066050 + (TATAA)n Simple_repeat Simple_repeat 2 116 0 978 322 31 40 chr1 55127768 55127866 -227065798 - L2 LINE L2 -346 2968 2871 2850 99 121 0 chr1 55127866 55128228 -227065436 + MLT2A2 LTR ERVL 1 318 -135 390 42 0 0 chr1 55128228 55128276 -227065388 + (CA)n Simple_repeat Simple_repeat 2 49 0 279 0 0 0 chr1 55128276 55128307 -227065357 + (TA)n Simple_repeat Simple_repeat 1 31 0 2850 99 121 0 chr1 55128307 55128347 -227065317 + MLT2A2 LTR ERVL 317 453 0 978 322 31 40 chr1 55128347 55128670 -227064994 - L2 LINE L2 -443 2871 2551 4614 131 22 37 chr1 55128674 55130156 -227063508 + L1MA4 LINE L1 4560 6009 -291 207 343 0 0 chr1 55130846 55130913 -227062751 + L2 LINE L2 3196 3262 -10 349 209 77 35 chr1 55130919 55131040 -227062624 + MIR SINE MIR 97 221 -36 3177 188 57 42 chr1 55131072 55131831 -227061833 + L1ME1 LINE L1 5378 6147 -19 23 33 0 0 chr1 55132366 55132396 -227061268 + AT_rich Low_complexity Low_complexity 1 30 0 3018 163 12 20 chr1 55133170 55133730 -227059934 + L1MB2 LINE L1 5580 6135 -36 721 184 52 17 chr1 55134016 55134190 -227059474 + MER58 DNA MER1_type 28 207 -134 493 290 51 7 chr1 55134252 55134390 -227059274 - MIR3 SINE MIR -7 201 58 202 351 58 26 chr1 55135148 55135302 -227058362 + L2 LINE L2 2933 3091 -181 1072 234 52 4 chr1 55136271 55136519 -227057145 + MIR SINE MIR 2 261 -1 315 49 0 0 chr1 55136857 55136898 -227056766 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 * 636 33 33 0 chr1 55136897 55136988 -227056676 + (GAAA)n Simple_repeat Simple_repeat 3 96 0 202 307 27 0 chr1 55137131 55137206 -227056458 + MIR SINE MIR 68 144 -64 404 280 119 12 chr1 55137219 55137387 -227056277 + MER117 DNA MER1_type 2 187 -10 243 0 0 0 chr1 55137546 55137573 -227056091 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 2330 87 3 0 chr1 55137582 55137880 -227055784 + AluSp SINE Alu 1 299 -14 213 351 99 15 chr1 55138031 55138162 -227055502 + MIR SINE MIR 79 220 -42 196 362 58 0 chr1 55138229 55138298 -227055366 + L2 LINE L2 3150 3222 -50 224 238 16 48 chr1 55138369 55138432 -227055232 + L2 LINE L2 3204 3264 -8 228 200 22 0 chr1 55139773 55139818 -227053846 - L2 LINE L2 -19 3253 3208 593 168 97 0 chr1 55139990 55140103 -227053561 - MER5C DNA MER1_type -200 124 1 2167 106 0 0 chr1 55140256 55140572 -227053092 + AluSx SINE Alu 3 318 0 1562 171 30 0 chr1 55141078 55141341 -227052323 - AluJb SINE Alu -2 310 40 368 327 74 14 chr1 55141399 55141579 -227052085 + MIR SINE MIR 2 187 -75 216 0 0 0 chr1 55142579 55142603 -227051061 + (T)n Simple_repeat Simple_repeat 1 24 0 498 333 24 12 chr1 55142615 55142780 -227050884 - MIR SINE MIR -66 196 30 2668 226 11 11 chr1 55143483 55144004 -227049660 + MLT1F LTR MaLR 8 528 -14 412 263 88 58 chr1 55144012 55144217 -227049447 - MIR SINE MIR 0 262 52 490 285 50 28 chr1 55144608 55144787 -227048877 - MIR SINE MIR -45 217 35 711 299 77 35 chr1 55145201 55145603 -227048061 + MLT1K LTR MaLR 131 549 -39 617 252 27 27 chr1 55146090 55146312 -227047352 + L1ME4a LINE L1 5537 5758 -363 502 227 142 8 chr1 55146528 55146775 -227046889 + L1ME4a LINE L1 5839 6118 -3 350 291 162 29 chr1 55146785 55146995 -227046669 + L1ME4a LINE L1 5815 6052 -69 359 396 57 13 chr1 55147537 55147767 -227045897 + MIR SINE MIR 13 252 -10 4606 173 23 29 chr1 55147803 55148004 -227045660 + L1MB7 LINE L1 4858 5059 -1125 2230 102 3 0 chr1 55148004 55148298 -227045366 + AluY SINE Alu 1 295 -16 4606 173 23 29 chr1 55148298 55149426 -227044238 + L1MB7 LINE L1 5059 6184 0 303 263 82 105 chr1 55149540 55149711 -227043953 + MLT1I LTR MaLR 58 224 -185 1086 247 42 9 chr1 55149780 55150148 -227043516 + LTR16C LTR ERVL 72 491 0 284 314 71 47 chr1 55150149 55150318 -227043346 + MLT1I LTR MaLR 219 391 -18 529 237 26 39 chr1 55150328 55150484 -227043180 + L1ME LINE L1 5611 5764 -357 359 290 60 73 chr1 55151405 55152158 -227041506 + L1ME3A LINE L1 1097 1940 -961 255 289 0 13 chr1 55152163 55152239 -227041425 + LTR36-int LTR ERV1 7439 7513 -243 2574 188 115 20 chr1 55152432 55152901 -227040763 + LTR36 LTR ERV1 1 533 -78 1996 100 50 0 chr1 55152901 55153182 -227040482 - AluY SINE Alu -14 297 3 2574 188 115 20 chr1 55153182 55153270 -227040394 + LTR36 LTR ERV1 533 611 0 324 304 50 41 chr1 55153824 55154044 -227039620 + L1ME3A LINE L1 2382 2603 -3937 1059 271 85 34 chr1 55154140 55155221 -227038443 + L1ME3A LINE L1 5151 6282 -282 243 146 0 0 chr1 55205458 55205499 -226988165 + (GA)n Simple_repeat Simple_repeat 1 41 0 1536 212 50 0 chr1 55205657 55205978 -226987686 + MER58B DNA MER1_type 1 337 -4 1746 258 58 16 chr1 55206080 55206526 -226987138 - MER45C DNA AcHobo 0 953 489 467 306 4 3 chr1 55206621 55206851 -226986813 - MER45C DNA AcHobo -651 302 1 2379 88 3 0 chr1 55207106 55207414 -226986250 - AluY SINE Alu -2 309 1 186 397 44 44 chr1 55207509 55207804 -226985860 - L2 LINE L2 -139 3133 2839 330 265 147 0 chr1 55208523 55208625 -226985039 + L2 LINE L2 3154 3270 -2 780 178 124 24 chr1 55209258 55209427 -226984237 + MSTA LTR MaLR 243 428 0 480 273 8 23 chr1 55209432 55209564 -226984100 + L2 LINE L2 3183 3312 -1 231 36 0 0 chr1 55210676 55210704 -226982960 + (TG)n Simple_repeat Simple_repeat 1 28 0 223 226 130 70 chr1 55210995 55211110 -226982554 + MIR SINE MIR 99 220 -42 345 336 78 0 chr1 55212095 55212211 -226981453 - L2 LINE L2 -9 3263 3139 195 386 10 30 chr1 55212474 55212575 -226981089 - MIR SINE MIR -163 99 1 1466 216 22 62 chr1 55212652 55213054 -226980610 - MLT1C LTR MaLR 0 467 82 1508 124 169 121 chr1 55213067 55213422 -226980242 - MER4A LTR ERV1 -32 632 261 550 116 32 11 chr1 55213422 55213517 -226980147 - MER4A LTR ERV1 -566 98 2 425 88 0 0 chr1 55213527 55213584 -226980080 - MER4A-int LTR ERV1 -2 6596 6540 380 256 22 0 chr1 55213586 55213676 -226979988 - MLT1C LTR MaLR -375 92 1 1630 201 19 58 chr1 55213941 55214098 -226979566 + MLT1A1 LTR MaLR 1 163 -202 2310 74 0 27 chr1 55214098 55214422 -226979242 + AluY SINE Alu 1 311 0 1630 201 19 58 chr1 55214422 55214642 -226979022 + MLT1A1 LTR MaLR 163 363 -2 195 254 28 42 chr1 55214642 55214702 -226978962 - MIR3 SINE MIR -57 151 91 362 228 30 20 chr1 55214803 55214904 -226978760 + L1ME LINE L1 5598 5699 -422 201 282 97 10 chr1 55216029 55216132 -226977532 - MIR3 SINE MIR -41 167 56 331 299 88 7 chr1 55216584 55216721 -226976943 + MIR SINE MIR 88 235 -27 222 341 60 19 chr1 55216751 55216905 -226976759 - MIR SINE MIR -61 147 36 250 253 10 20 chr1 55217318 55217417 -226976247 - L1MB3 LINE L1 -26 6157 6060 * 4423 136 33 31 chr1 55217391 55218076 -226975588 - L1MA4 LINE L1 -279 6021 5339 2487 73 0 10 chr1 55218076 55218379 -226975285 - AluSc SINE Alu -7 302 3 4423 136 33 31 chr1 55218379 55219074 -226974590 - L1MA4 LINE L1 -961 5339 4639 21 0 0 0 chr1 55219475 55219496 -226974168 + GC_rich Low_complexity Low_complexity 1 21 0 973 279 63 53 chr1 55220000 55220624 -226973040 - L2 LINE L2 -1 3312 2690 3399 195 31 15 chr1 55220624 55221936 -226971728 + L1ME1 LINE L1 4601 5940 -226 350 391 58 25 chr1 55222272 55222671 -226970993 + L2 LINE L2 2562 2973 -341 257 269 96 10 chr1 55223263 55223367 -226970297 - L2 LINE L2 -1 3271 3159 2080 126 18 0 chr1 55223601 55223887 -226969777 + AluSq SINE Alu 1 291 -22 717 269 101 4 chr1 55224115 55224353 -226969311 + MIR SINE MIR 2 262 0 522 225 67 0 chr1 55225164 55225284 -226968380 - MIR SINE MIR -43 219 92 765 278 57 41 chr1 55225475 55225792 -226967872 - L2 LINE L2 0 3313 2992 337 221 53 21 chr1 55225926 55226021 -226967643 - L2 LINE L2 -34 3279 3182 231 296 20 31 chr1 55226546 55226644 -226967020 + MIR SINE MIR 79 175 -87 209 304 152 16 chr1 55226773 55226898 -226966766 + MIR SINE MIR 56 197 -65 483 285 75 23 chr1 55228091 55228305 -226965359 - MIR SINE MIR -16 246 22 297 298 60 0 chr1 55230700 55230784 -226962880 - L2 LINE L2 -25 3247 3159 * 392 284 73 64 chr1 55230778 55230872 -226962792 + MIR SINE MIR 56 148 -114 2553 56 0 10 chr1 55230872 55231176 -226962488 + AluY SINE Alu 1 301 -10 392 284 73 64 chr1 55231176 55231285 -226962379 + MIR SINE MIR 148 261 -1 195 100 0 0 chr1 55231562 55231592 -226962072 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 276 250 47 0 chr1 55231598 55231662 -226962002 - L2 LINE L2 -16 3256 3190 1501 192 38 52 chr1 55231707 55232050 -226961614 + LTR32 LTR ERVL 15 352 -119 816 162 54 7 chr1 55232194 55232342 -226961322 + LTR32 LTR ERVL 317 471 0 372 344 114 18 chr1 55232425 55232749 -226960915 - L2 LINE L2 -203 3069 2716 3537 114 8 6 chr1 55232906 55233396 -226960268 + MER1A DNA MER1_type 39 529 0 972 316 122 25 chr1 55233443 55234091 -226959573 - L2 LINE L2 -920 2394 1684 394 231 19 37 chr1 55234488 55234596 -226959068 + MER5B DNA MER1_type 1 106 -72 440 301 100 105 chr1 55234738 55235167 -226958497 + L2 LINE L2 2826 3252 -20 920 186 120 0 chr1 55235178 55235345 -226958319 + MER5A DNA MER1_type 3 189 0 29 28 0 0 chr1 55235460 55235496 -226958168 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 149 0 chr1 55235637 55235751 -226957913 + L2 LINE L2 3140 3270 -2 26 82 0 0 chr1 55236527 55236588 -226957076 + AT_rich Low_complexity Low_complexity 1 61 0 57 47 0 0 chr1 55236815 55236900 -226956764 + AT_rich Low_complexity Low_complexity 1 85 0 431 291 24 31 chr1 55237263 55237390 -226956274 - MIR SINE MIR -77 185 60 206 146 42 0 chr1 55237859 55237907 -226955757 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 1721 168 85 12 chr1 55238033 55238373 -226955291 + MLT1A1 LTR MaLR 1 365 0 182 171 0 73 chr1 55238876 55238917 -226954747 - MER5A DNA MER1_type -150 39 2 1303 194 0 35 chr1 55239192 55239419 -226954245 - MER20 DNA MER1_type 0 219 1 323 228 12 140 chr1 55239775 55239946 -226953718 + MIR3 SINE MIR 60 208 0 362 324 27 0 chr1 55240144 55240255 -226953409 - MIR SINE MIR -64 198 85 206 315 272 0 chr1 55240902 55240994 -226952670 - L2 LINE L2 -40 3232 3116 246 286 52 13 chr1 55241119 55241196 -226952468 + L2 LINE L2 3153 3232 -40 457 254 21 49 chr1 55241284 55241426 -226952238 - MIR SINE MIR -115 147 10 249 353 9 9 chr1 55241445 55241561 -226952103 + MIR SINE MIR 99 214 -48 261 270 16 16 chr1 55242138 55242201 -226951463 - L2 LINE L2 -2 3270 3208 292 304 154 0 chr1 55242399 55242659 -226951005 + L1ME4a LINE L1 5798 6097 -24 39 38 0 0 chr1 55242664 55242717 -226950947 + AT_rich Low_complexity Low_complexity 1 53 0 363 367 7 14 chr1 55242757 55242904 -226950760 - MIR3 SINE MIR -54 154 9 783 176 57 57 chr1 55243586 55243796 -226949868 + Zaphod DNA AcHobo 3739 3948 -83 438 79 0 92 chr1 55243796 55243911 -226949753 + L1PA16 LINE L1 6078 6185 0 247 319 0 0 chr1 55244045 55244114 -226949550 + L2 LINE L2 3186 3254 -18 287 304 101 38 chr1 55244298 55244456 -226949208 - MLT1K LTR MaLR -388 200 33 366 190 13 51 chr1 55244506 55244585 -226949079 - Tigger5 DNA MER2_type -1 2322 2247 * 580 183 380 0 chr1 55244583 55244725 -226948939 - Tigger5 DNA MER2_type -2127 196 1 240 35 0 0 chr1 55244738 55244767 -226948897 + (CA)n Simple_repeat Simple_repeat 2 30 0 1902 161 32 40 chr1 55244783 55245000 -226948664 + MER2 DNA MER2_type 1 215 -130 1764 93 18 0 chr1 55245000 55245225 -226948439 - MER30 DNA MER1_type -1 229 1 1902 161 32 40 chr1 55245225 55245354 -226948310 + MER2 DNA MER2_type 215 344 -1 419 0 20 0 chr1 55245837 55245888 -226947776 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 1847 131 3 31 chr1 55245890 55246180 -226947484 - AluSx SINE Alu -30 282 1 258 261 0 0 chr1 55246379 55246490 -226947174 + (TAG)n Simple_repeat Simple_repeat 1 111 0 2703 108 14 14 chr1 55246744 55247106 -226946558 - THE1B LTR MaLR 0 364 3 183 263 53 40 chr1 55247350 55247426 -226946238 - MIR SINE MIR -161 101 25 435 270 30 22 chr1 55248168 55248318 -226945346 + MIR SINE MIR 7 155 -68 460 316 114 44 chr1 55248718 55249274 -226944390 + L2 LINE L2 2651 3233 -39 350 272 11 33 chr1 55250170 55250262 -226943402 + MIR3 SINE MIR 75 164 -44 243 103 0 0 chr1 55250389 55250428 -226943236 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 246 213 0 0 chr1 55250483 55250530 -226943134 - MIR SINE MIR -102 106 60 482 220 96 62 chr1 55250959 55251101 -226942563 + L2 LINE L2 2961 3114 -199 1528 200 40 3 chr1 55251101 55251401 -226942263 - AluJb SINE Alu -1 311 1 482 220 96 62 chr1 55251401 55251467 -226942197 + L2 LINE L2 3114 3176 -137 222 62 0 0 chr1 55252423 55252455 -226941209 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 305 280 10 10 chr1 55252680 55252780 -226940884 + MIR SINE MIR 104 203 -59 236 230 0 40 chr1 55252781 55252855 -226940809 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 716 302 90 12 chr1 55252873 55253118 -226940546 - L3 LINE CR1 -32 1545 1282 334 311 38 44 chr1 55253205 55253388 -226940276 + MIR SINE MIR 81 262 0 369 250 188 0 chr1 55253937 55254049 -226939615 - MER94 DNA DNA -1 133 1 490 301 84 8 chr1 55254082 55254321 -226939343 + L2 LINE L2 2258 2514 -800 2386 102 0 3 chr1 55255268 55255581 -226938083 + AluSx SINE Alu 1 312 0 1274 180 105 11 chr1 55255599 55255866 -226937798 + AluJo SINE Alu 1 292 -20 272 263 88 0 chr1 55256389 55256469 -226937195 - MIR SINE MIR -62 146 60 378 352 47 21 chr1 55256576 55256769 -226936895 - MIR3 SINE MIR -7 201 4 292 310 11 0 chr1 55256781 55256868 -226936796 - MIR SINE MIR -118 144 57 660 274 87 9 chr1 55257497 55257716 -226935948 + MIR SINE MIR 21 256 -6 782 280 109 31 chr1 55257830 55258187 -226935477 - L2 LINE L2 -2 3311 2927 552 296 106 22 chr1 55258476 55258702 -226934962 - MIR SINE MIR -15 247 3 349 303 115 0 chr1 55258718 55258840 -226934824 + L2 LINE L2 3134 3269 -3 1373 156 28 0 chr1 55259422 55259634 -226934030 + MER20 DNA MER1_type 2 219 0 1986 94 0 4 chr1 55259730 55259986 -226933678 + AluSg SINE Alu 41 295 -15 234 258 135 0 chr1 55259987 55260076 -226933588 - MIR SINE MIR -73 135 35 311 240 206 0 chr1 55261319 55261465 -226932199 - MIR SINE MIR -56 206 31 757 283 25 12 chr1 55261921 55262161 -226931503 + MIR SINE MIR 14 256 -6 212 298 53 64 chr1 55262201 55262295 -226931369 + L2 LINE L2 3179 3271 -1 406 301 70 42 chr1 55262298 55262519 -226931145 + MIR SINE MIR 2 233 -29 238 280 40 56 chr1 55262719 55262844 -226930820 - L2 LINE L2 -12 3260 3138 320 271 31 108 chr1 55263146 55263275 -226930389 - L2 LINE L2 -16 3256 3138 244 186 0 34 chr1 55263346 55263355 -226930309 + (TGG)n Simple_repeat Simple_repeat 2 10 -48 225 0 0 0 chr1 55263355 55263380 -226930284 + (TTG)n Simple_repeat Simple_repeat 3 27 0 244 186 0 34 chr1 55263380 55263429 -226930235 + (TGG)n Simple_repeat Simple_repeat 10 58 0 299 286 29 128 chr1 55263635 55263908 -226929756 - L2 LINE L2 -35 3237 2992 195 69 0 0 chr1 55263911 55263940 -226929724 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 384 243 22 20 chr1 55264041 55264177 -226929487 - MIR3 SINE MIR -7 201 66 332 221 267 0 chr1 55264867 55264953 -226928711 - MIR SINE MIR -113 149 41 299 299 70 57 chr1 55265082 55265239 -226928425 + MIR SINE MIR 87 245 -17 1001 193 149 4 chr1 55265356 55265584 -226928080 + MIR SINE MIR 2 262 0 241 324 62 41 chr1 55265780 55265925 -226927739 + L2 LINE L2 3124 3271 -1 363 343 35 18 chr1 55266014 55266183 -226927481 + MIR3 SINE MIR 16 187 -21 435 256 114 66 chr1 55266235 55266446 -226927218 - L2 LINE L2 -25 3247 3027 434 327 183 18 chr1 55266602 55267000 -226926664 + L2 LINE L2 2849 3312 -1 739 99 10 0 chr1 55267481 55267582 -226926082 - AluY SINE Alu -7 304 203 360 291 23 58 chr1 55267677 55267849 -226925815 - MIR3 SINE MIR -26 182 17 198 254 30 30 chr1 55268329 55268396 -226925268 - L2 LINE L2 -3 3310 3244 466 194 52 67 chr1 55269626 55269687 -226923977 - MIR SINE MIR -54 208 148 2008 120 3 11 chr1 55269687 55269991 -226923673 - AluSg SINE Alu 0 302 1 466 194 52 67 chr1 55269991 55270062 -226923602 - MIR SINE MIR -114 148 77 193 247 55 41 chr1 55270113 55270186 -226923478 + L2 LINE L2 3230 3303 -10 460 270 13 46 chr1 55270612 55270764 -226922900 - MIR3 SINE MIR -39 169 23 1806 193 13 37 chr1 55271011 55271385 -226922279 + MLT1A1 LTR MaLR 1 365 0 365 368 30 12 chr1 55271475 55271641 -226922023 - MIR SINE MIR -73 189 21 255 338 0 50 chr1 55271641 55271780 -226921884 - MARNA DNA Mariner -373 213 82 510 261 38 114 chr1 55271809 55272150 -226921514 - L2 LINE L2 0 3313 2999 184 297 27 40 chr1 55272199 55272273 -226921391 + L2 LINE L2 1362 1434 -1880 1633 125 27 0 chr1 55272346 55272570 -226921094 - MER30 DNA MER1_type 0 230 1 202 286 133 0 chr1 55272570 55272668 -226920996 + MIR SINE MIR 87 197 -65 1084 263 85 61 chr1 55272682 55273154 -226920510 - LTR67 LTR ERVL -14 543 61 242 167 0 0 chr1 55273197 55273239 -226920425 + L2 LINE L2 3214 3255 -17 298 324 18 9 chr1 55274540 55274651 -226919013 - MIR SINE MIR -105 157 46 846 217 0 22 chr1 55275095 55275275 -226918389 - FRAM SINE Alu 0 176 1 239 297 90 36 chr1 55275320 55275431 -226918233 + MIR SINE MIR 35 151 -111 241 385 41 30 chr1 55276235 55276404 -226917260 - L2 LINE L2 0 3272 3102 29 60 0 0 chr1 55276510 55276560 -226917104 + AT_rich Low_complexity Low_complexity 1 50 0 375 272 160 63 chr1 55276801 55277213 -226916451 - L1ME3A LINE L1 -233 5937 5486 341 292 119 27 chr1 55277329 55277410 -226916254 + L2 LINE L2 2594 2666 -648 200 35 35 0 chr1 55277410 55277439 -226916225 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 341 292 119 27 chr1 55277439 55277576 -226916088 + L2 LINE L2 2666 2832 -482 1077 52 0 22 chr1 55277616 55277751 -226915913 - AluY SINE Alu -179 132 1 207 320 54 34 chr1 55277759 55277906 -226915758 + L2 LINE L2 2837 2986 -327 532 248 43 0 chr1 55277998 55278115 -226915549 + MLT1J2 LTR MaLR 65 186 -264 555 196 98 0 chr1 55278381 55278483 -226915181 + MER45A DNA AcHobo 38 149 -29 337 321 93 43 chr1 55278511 55278673 -226914991 + L2 LINE L2 3099 3268 -4 256 377 85 0 chr1 55278698 55278934 -226914730 + MIR SINE MIR 6 261 -1 2618 264 89 61 chr1 55278970 55280284 -226913380 - L2 LINE L2 -4 3309 1958 402 74 0 0 chr1 55280674 55280728 -226912936 + (TG)n Simple_repeat Simple_repeat 2 55 0 311 261 135 9 chr1 55281532 55281643 -226912021 - MER5B DNA MER1_type -51 127 3 425 19 19 0 chr1 55281688 55281742 -226911922 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 378 286 154 11 chr1 55281776 55281951 -226911713 + MIR SINE MIR 47 246 -16 430 268 70 7 chr1 55282459 55282601 -226911063 + MIR SINE MIR 112 262 0 1345 201 178 23 chr1 55282620 55282963 -226910701 - MSTD LTR MaLR 0 396 1 299 237 0 0 chr1 55283481 55283540 -226910124 - L2 LINE L2 0 3272 3214 234 250 0 0 chr1 55284196 55284244 -226909420 - MIR SINE MIR -150 112 65 231 61 0 0 chr1 55284319 55284352 -226909312 + (CATA)n Simple_repeat Simple_repeat 2 34 0 352 336 88 31 chr1 55284363 55284589 -226909075 - MIR SINE MIR -21 241 3 225 227 0 0 chr1 55284694 55284738 -226908926 + L3 LINE CR1 1532 1575 -2 196 333 34 86 chr1 55284884 55285118 -226908546 - L2 LINE L2 -213 3059 2838 414 332 78 24 chr1 55285538 55285743 -226907921 + MIR SINE MIR 20 235 -27 312 83 0 0 chr1 55286626 55286674 -226906990 + (CA)n Simple_repeat Simple_repeat 2 49 0 185 132 26 0 chr1 55286912 55286950 -226906714 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 226 354 63 34 chr1 55287208 55287383 -226906281 - L2 LINE L2 -221 3051 2872 204 133 12 108 chr1 55287541 55287624 -226906040 + T-rich Low_complexity Low_complexity 5 79 0 929 291 34 78 chr1 55287626 55288145 -226905519 - L2 LINE L2 -288 3025 2531 441 310 26 0 chr1 55288195 55288311 -226905353 - MIR3 SINE MIR -53 155 37 258 154 0 0 chr1 55288664 55288703 -226904961 + polypyrimidine Low_complexity Low_complexity 3 41 0 196 295 19 48 chr1 55289042 55289147 -226904517 + MIR SINE MIR 118 219 -43 254 233 33 0 chr1 55289175 55289235 -226904429 + CT-rich Low_complexity Low_complexity 4 65 0 230 302 0 0 chr1 55289383 55289446 -226904218 + MIR SINE MIR 150 212 -50 853 260 65 0 chr1 55289480 55289726 -226903938 - MIR SINE MIR 0 262 1 490 234 54 9 chr1 55290553 55290664 -226903000 - MIR SINE MIR -89 173 58 2194 135 3 15 chr1 55290689 55291029 -226902635 + MER1B DNA MER1_type 1 336 -1 803 241 101 63 chr1 55291032 55291397 -226902267 + L1ME2 LINE L1 5776 6154 -10 217 311 178 0 chr1 55291639 55291729 -226901935 + MIR3 SINE MIR 82 187 -21 373 273 173 7 chr1 55292023 55292162 -226901502 - MIR SINE MIR -13 249 88 1047 256 52 43 chr1 55293574 55294034 -226899630 - LTR16B LTR ERVL 0 464 1 21 0 0 0 chr1 55294147 55294168 -226899496 + AT_rich Low_complexity Low_complexity 1 21 0 2941 316 89 18 chr1 55294217 55295738 -226897926 + ERVL LTR ERVL 2382 4010 -1754 1076 268 45 19 chr1 55295925 55296239 -226897425 + ERVL LTR ERVL 4210 4531 -1123 1186 261 39 46 chr1 55296250 55296683 -226896981 + L2 LINE L2 2882 3311 -2 422 274 32 16 chr1 55296745 55296869 -226896795 + MIR SINE MIR 22 147 -115 862 330 72 21 chr1 55296885 55297513 -226896151 + ERVL LTR ERVL 4536 5195 -290 568 223 297 14 chr1 55297807 55298353 -226895311 + LTR50 LTR ERVL 1 791 -4 407 269 28 69 chr1 55298890 55299035 -226894629 - L2 LINE L2 0 3272 3134 268 157 0 0 chr1 55299480 55299532 -226894132 - L1MB1 LINE L1 -1 6167 6122 628 234 0 0 chr1 55300144 55300268 -226893396 + FLAM_A SINE Alu 1 124 -9 243 0 0 0 chr1 55300309 55300336 -226893328 + (TA)n Simple_repeat Simple_repeat 1 27 0 549 328 21 42 chr1 55300336 55300577 -226893087 - L3 LINE CR1 -22 1555 1320 495 284 24 100 chr1 55300842 55301092 -226892572 - MIR SINE MIR -1 261 31 2062 108 10 36 chr1 55301157 55301463 -226892201 + AluSq SINE Alu 1 298 -15 184 338 92 44 chr1 55301510 55301738 -226891926 - L2 LINE L2 -215 3057 2819 6120 30 13 8 chr1 55301759 55302503 -226891161 - L1PA4 LINE L1 0 6155 5408 516 240 47 53 chr1 55303233 55303383 -226890281 + MIR SINE MIR 49 197 -65 482 278 0 40 chr1 55303771 55303897 -226889767 - MIR3 SINE MIR -46 162 42 4578 228 87 62 chr1 55304573 55307326 -226886338 + L1MEc LINE L1 44 2821 -3394 277 231 0 13 chr1 55307333 55307411 -226886253 + L1MEc LINE L1 4303 4379 -1836 290 256 18 166 chr1 55307411 55307634 -226886030 + L2 LINE L2 2865 3054 -218 302 336 45 36 chr1 55307846 55307956 -226885708 + L2 LINE L2 3132 3242 -30 236 209 64 118 chr1 55308536 55308646 -226885018 - MIR3 SINE MIR -17 191 88 6797 108 9 16 chr1 55308783 55310191 -226883473 - L1MA3 LINE L1 0 7724 6324 * 19212 137 41 24 chr1 55310188 55313638 -226880026 - L1MA3 LINE L1 -4045 3520 10 359 373 48 20 chr1 55313661 55313913 -226879751 + L2 LINE L2 2824 3082 -190 2982 300 132 26 chr1 55314935 55316358 -226877306 - L2 LINE L2 -6 3307 2037 456 19 0 0 chr1 55316358 55316411 -226877253 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 2982 300 132 26 chr1 55316411 55316488 -226877176 - L2 LINE L2 -1276 2037 1970 2137 125 0 0 chr1 55316488 55316777 -226876887 - AluSx SINE Alu -23 289 1 2982 300 132 26 chr1 55316777 55317012 -226876652 - L2 LINE L2 -1343 1970 1372 216 403 0 0 chr1 55317026 55317093 -226876571 + L2 LINE L2 3200 3266 -6 606 341 40 9 chr1 55317150 55317376 -226876288 + MIR SINE MIR 18 250 -12 305 319 76 45 chr1 55317953 55318375 -226875289 + MLT1J1 LTR MaLR 1 476 -35 699 365 35 6 chr1 55318417 55318762 -226874902 + L3 LINE CR1 1212 1566 -11 366 363 87 14 chr1 55319251 55319592 -226874072 + L2 LINE L2 2656 3020 -252 922 237 56 13 chr1 55319602 55319834 -226873830 - MIR SINE MIR -14 248 7 321 318 91 45 chr1 55319912 55320044 -226873620 + L2 LINE L2 3121 3258 -14 190 299 60 15 chr1 55320204 55320271 -226873393 + MIR3 SINE MIR 102 171 -37 246 214 54 0 chr1 55320907 55320963 -226872701 + MIR SINE MIR 90 148 -114 288 318 180 11 chr1 55321184 55321373 -226872291 + L2 LINE L2 2553 2773 -541 506 371 20 5 chr1 55321412 55321614 -226872050 + MIR SINE MIR 46 250 -12 2126 129 0 0 chr1 55322670 55322964 -226870700 + AluSq SINE Alu 1 294 -19 31 0 0 0 chr1 55322975 55323006 -226870658 + AT_rich Low_complexity Low_complexity 1 31 0 182 304 0 0 chr1 55323051 55323097 -226870567 - L2 LINE L2 -17 3296 3251 578 339 25 53 chr1 55324055 55324338 -226869326 - L2 LINE L2 -6 3266 2992 2375 150 100 29 chr1 55324806 55325294 -226868370 + MER44D DNA MER2_type 1 578 -27 2210 85 4 0 chr1 55325294 55325566 -226868098 + AluSg SINE Alu 19 291 -19 41076 34 21 1 chr1 55325567 55331599 -226862065 + L1PA3 LINE L1 1 6155 0 229 127 0 48 chr1 55331847 55331910 -226861754 + (CAGAGA)n Simple_repeat Simple_repeat 2 61 0 225 267 0 0 chr1 55331966 55332011 -226861653 - L2 LINE L2 -12 3260 3216 1464 169 99 37 chr1 55332330 55332733 -226860931 + MSTC LTR MaLR 1 428 0 204 326 179 11 chr1 55333275 55333370 -226860294 + MIR SINE MIR 18 128 -80 405 226 202 8 chr1 55333898 55334022 -226859642 + MIR SINE MIR 3 150 -112 389 265 31 0 chr1 55334345 55334443 -226859221 + MER94 DNA DNA 5 105 -29 2482 50 0 7 chr1 55334977 55335278 -226858386 - AluY SINE Alu -12 299 1 387 327 88 40 chr1 55335447 55335673 -226857991 + MIR SINE MIR 20 256 -6 236 322 0 44 chr1 55336449 55336539 -226857125 - MIR SINE MIR -85 123 38 203 241 188 27 chr1 55336956 55337068 -226856596 + MIR SINE MIR 77 206 -56 372 288 68 15 chr1 55337171 55337303 -226856361 + L2 LINE L2 3175 3313 0 430 325 177 19 chr1 55338215 55338532 -226855132 + L2 LINE L2 2414 2780 -534 393 313 60 12 chr1 55338615 55338781 -226854883 + L3 LINE CR1 1361 1534 -43 714 267 82 52 chr1 55339322 55339554 -226854110 + MIR SINE MIR 18 256 -6 225 359 69 31 chr1 55339564 55339723 -226853941 - MIR SINE MIR -75 187 23 420 274 135 43 chr1 55340685 55340893 -226852771 + MIR SINE MIR 8 234 -28 1371 240 19 25 chr1 55340894 55341261 -226852403 + MLT1A1 LTR MaLR 1 365 0 450 303 61 18 chr1 55342359 55342588 -226851076 - MIR SINE MIR -15 247 10 318 328 46 52 chr1 55342905 55343079 -226850585 + MIR3 SINE MIR 35 207 -1 273 298 112 56 chr1 55343107 55343268 -226850396 - MIR SINE MIR -1 261 92 807 242 39 0 chr1 55344057 55344235 -226849429 + MIR SINE MIR 72 256 -6 442 233 11 0 chr1 55344565 55344655 -226849009 - MIR SINE MIR -130 132 42 305 306 24 32 chr1 55344771 55344895 -226848769 + MIR3 SINE MIR 7 129 -79 22 35 0 0 chr1 55345331 55345360 -226848304 + AT_rich Low_complexity Low_complexity 1 29 0 439 231 35 14 chr1 55345484 55345627 -226848037 - L1MB8 LINE L1 0 6178 6033 264 415 49 0 chr1 55346293 55346435 -226847229 + L2 LINE L2 3122 3270 -2 396 216 18 54 chr1 55346640 55346716 -226846948 + L1M4 LINE L1 4 76 -6783 2269 113 0 7 chr1 55346716 55347017 -226846647 - AluSq SINE Alu -14 299 1 396 216 18 54 chr1 55347017 55347051 -226846613 + L1M4 LINE L1 76 110 -6749 2896 276 28 23 chr1 55347060 55347960 -226845704 + L1M4 LINE L1 203 1106 -5753 980 236 15 0 chr1 55347991 55348254 -226845410 + L1M4 LINE L1 1918 2184 -4775 5043 226 49 9 chr1 55348258 55349668 -226843996 + L1M4 LINE L1 4444 5909 -1048 1722 154 16 52 chr1 55349670 55349990 -226843674 + MLT1A1 LTR MaLR 1 308 -57 1862 150 46 15 chr1 55349990 55350317 -226843347 + MER1B DNA MER1_type 1 337 0 1722 154 16 52 chr1 55350317 55350359 -226843305 + MLT1A1 LTR MaLR 308 350 -15 282 202 0 20 chr1 55350380 55350479 -226843185 + L1M4 LINE L1 5917 6013 -944 * 792 141 6 55 chr1 55350476 55350639 -226843025 + L1MA7 LINE L1 5981 6135 -156 1267 180 10 0 chr1 55350639 55350845 -226842819 - AluJb SINE Alu -9 303 96 683 84 252 0 chr1 55350867 55350998 -226842666 + L1MA7 LINE L1 6128 6291 0 995 178 0 18 chr1 55351000 55351219 -226842445 + L1M4 LINE L1 6000 6214 -743 451 367 35 32 chr1 55351345 55351793 -226841871 - L2 LINE L2 -67 3205 2771 445 320 37 53 chr1 55351811 55352055 -226841609 - L2 LINE L2 -2594 720 481 246 304 127 38 chr1 55352251 55352488 -226841176 - L2 LINE L2 -685 2629 2372 180 111 0 0 chr1 55353363 55353390 -226840274 + (T)n Simple_repeat Simple_repeat 1 27 0 216 281 0 0 chr1 55353718 55353775 -226839889 + L3 LINE CR1 448 504 -1073 543 287 71 74 chr1 55353925 55354077 -226839587 + L3 LINE CR1 541 693 -884 2586 102 13 8 chr1 55354077 55354450 -226839214 + THE1C LTR MaLR 1 375 0 543 287 71 74 chr1 55354450 55354593 -226839071 + L3 LINE CR1 693 835 -742 892 150 29 6 chr1 55354611 55354784 -226838880 + L1MD3 LINE L1 7738 7914 -81 1690 144 75 19 chr1 55354784 55355104 -226838560 - MER50 LTR ERV1 0 734 397 1455 121 33 0 chr1 55355098 55355282 -226838382 - MER50 LTR ERV1 -486 248 53 * 180 0 0 0 chr1 55355282 55355302 -226838362 + (TG)n Simple_repeat Simple_repeat 2 21 0 1455 121 33 0 chr1 55355302 55355357 -226838307 - MER50 LTR ERV1 -681 53 1 328 208 13 0 chr1 55355357 55355434 -226838230 + L1MD3 LINE L1 7911 7988 -7 1484 139 16 0 chr1 55355434 55355685 -226837979 + L1PA16 LINE L1 5909 6163 -3 22 35 0 0 chr1 55355688 55355717 -226837947 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr1 55355743 55355768 -226837896 + AT_rich Low_complexity Low_complexity 1 25 0 774 291 32 58 chr1 55355802 55356115 -226837549 + L3 LINE CR1 958 1262 -315 1227 195 33 17 chr1 55356120 55356361 -226837303 - AluJo SINE Alu -14 298 54 205 296 37 37 chr1 55356374 55356482 -226837182 + L3 LINE CR1 1247 1354 -223 318 23 0 0 chr1 55356590 55356634 -226837030 + L1PA4 LINE L1 6112 6155 0 326 368 94 9 chr1 55357203 55357415 -226836249 + L2 LINE L2 3030 3259 -13 431 238 86 9 chr1 55357654 55357759 -226835905 + L2 LINE L2 3180 3292 -21 383 293 35 91 chr1 55357780 55357978 -226835686 + L1M4 LINE L1 688 874 -5668 5813 142 19 8 chr1 55358035 55359082 -226834582 + L1MC1 LINE L1 5274 6332 -1 895 208 25 4 chr1 55359117 55359353 -226834311 + L1ME1 LINE L1 4861 5101 -1045 823 144 13 0 chr1 55359347 55359500 -226834164 + L1MC/D LINE L1 5381 5535 -798 * 2540 210 89 20 chr1 55359501 55360497 -226833167 + L1ME1 LINE L1 5098 6161 -5 316 394 44 0 chr1 55361081 55361261 -226832403 + MIR SINE MIR 20 207 -55 305 336 26 17 chr1 55361816 55361932 -226831732 - MIR3 SINE MIR -49 159 43 683 245 75 32 chr1 55361932 55362339 -226831325 + MLT1J LTR MaLR 1 467 -44 232 260 58 77 chr1 55362471 55362575 -226831089 - L2 LINE L2 -2 3311 3210 943 295 106 23 chr1 55362721 55363202 -226830462 + LTR33 LTR ERVL 1 521 0 2177 76 31 24 chr1 55363769 55364060 -226829604 + AluSx SINE Alu 1 293 -19 1995 229 39 20 chr1 55364073 55364562 -226829102 + MLT1D LTR MaLR 1 498 -7 9913 138 19 84 chr1 55415699 55417867 -226775797 - L1P LINE L1 -4108 2038 12 297 350 80 20 chr1 55417883 55418083 -226775581 - MIR SINE MIR -23 239 28 985 194 51 0 chr1 55419522 55419718 -226773946 + MER2 DNA MER2_type 1 206 -139 222 37 0 0 chr1 55420432 55420459 -226773205 + (TG)n Simple_repeat Simple_repeat 2 28 0 181 294 20 0 chr1 55420520 55420571 -226773093 + L2 LINE L2 3262 3313 0 22 35 0 0 chr1 55420580 55420609 -226773055 + AT_rich Low_complexity Low_complexity 1 29 0 408 294 232 9 chr1 55421252 55421463 -226772201 - MIR SINE MIR -2 260 3 1071 221 70 168 chr1 55421609 55422365 -226771299 + L2 LINE L2 2190 2871 -443 196 279 49 0 chr1 55422441 55422502 -226771162 + L2 LINE L2 3241 3304 -9 1899 138 53 61 chr1 55422618 55422996 -226770668 - THE1C LTR MaLR 0 375 1 208 378 84 0 chr1 55423097 55423216 -226770448 - L3 LINE CR1 -19 1558 1430 226 338 0 0 chr1 55423324 55423404 -226770260 - MIR SINE MIR -13 249 170 280 184 75 82 chr1 55423544 55423691 -226769973 - LTR33 LTR ERVL -10 511 366 336 308 91 45 chr1 55423804 55424002 -226769662 - LTR33 LTR ERVL -306 215 9 592 287 53 14 chr1 55424637 55424846 -226768818 + MIR SINE MIR 33 249 -13 2183 149 25 0 chr1 55425667 55426022 -226767642 - THE1B LTR MaLR 0 364 1 10989 94 27 27 chr1 55426022 55427601 -226766063 - THE1B-int LTR MaLR 0 1580 1 2130 157 22 0 chr1 55427601 55427957 -226765707 - THE1B LTR MaLR 0 364 1 1808 186 28 105 chr1 55428245 55428554 -226765110 + MLT2B1 LTR ERVL 1 258 -262 441 0 0 0 chr1 55428554 55428603 -226765061 + (CAT)n Simple_repeat Simple_repeat 3 51 0 1808 186 28 105 chr1 55428603 55428797 -226764867 + MLT2B1 LTR ERVL 258 465 -55 282 373 20 13 chr1 55428797 55429100 -226764564 + L1PA15 LINE L1 1 305 -7276 4817 199 15 18 chr1 55430246 55435493 -226758171 + L1PA15 LINE L1 2318 7603 0 309 87 28 0 chr1 55435499 55435555 -226758109 + MLT2B2 LTR ERVL 467 515 0 194 310 200 10 chr1 55435790 55435890 -226757774 + MIR SINE MIR 110 228 -34 376 336 63 7 chr1 55435961 55436104 -226757560 + L2 LINE L2 3121 3271 -1 350 331 16 16 chr1 55436695 55436819 -226756845 - L2 LINE L2 -19 3294 3171 248 343 141 0 chr1 55436930 55437074 -226756590 - MIR SINE MIR -73 189 27 497 318 14 0 chr1 55437095 55437243 -226756421 - L3 LINE CR1 -59 1518 1369 345 257 0 29 chr1 55437355 55437460 -226756204 + L1ME3A LINE L1 5458 5559 -605 978 152 12 0 chr1 55437528 55437693 -226755971 + MLT1D LTR MaLR 21 187 -318 1878 37 0 0 chr1 55437702 55437943 -226755721 - L1PA4 LINE L1 -2214 3932 3692 * 11473 26 2 2 chr1 55437938 55440148 -226753516 + L1PA4 LINE L1 3946 6155 0 976 211 81 21 chr1 55440148 55440432 -226753232 + MLT1D LTR MaLR 205 505 0 502 222 78 0 chr1 55440432 55440599 -226753065 + L1ME3A LINE L1 5605 5784 -386 613 187 151 12 chr1 55440600 55440766 -226752898 + L1ME3A LINE L1 5965 6153 -17 1841 158 3 3 chr1 55440880 55441171 -226752493 - AluSx SINE Alu -16 296 6 311 311 93 50 chr1 55441333 55441494 -226752170 + MIR3 SINE MIR 3 170 -38 435 370 6 6 chr1 55442649 55442814 -226750850 + MIR3 SINE MIR 3 167 -41 182 258 91 15 chr1 55442811 55442877 -226750787 - MIR SINE MIR -24 238 168 * 235 270 135 0 chr1 55442921 55443047 -226750617 + L2 LINE L2 3120 3262 -51 1366 291 39 16 chr1 55443347 55443783 -226749881 - LTR16A LTR ERVL -4 446 1 347 322 99 6 chr1 55444103 55444274 -226749390 - MIR SINE MIR -27 235 49 298 255 55 23 chr1 55444376 55444472 -226749192 + MIR3 SINE MIR 72 171 -37 1956 147 7 10 chr1 55444475 55444782 -226748882 - AluSx SINE Alu -6 306 1 264 292 0 15 chr1 55444852 55444917 -226748747 + MIR SINE MIR 5 68 -194 311 78 20 0 chr1 55445310 55445361 -226748303 + (GA)n Simple_repeat Simple_repeat 1 52 0 297 315 105 43 chr1 55445987 55446149 -226747515 - MIR SINE MIR -80 182 11 269 217 89 100 chr1 55446721 55446901 -226746763 - MIR3 SINE MIR -7 201 24 390 325 23 95 chr1 55447343 55447648 -226746016 + L2 LINE L2 2904 3186 -86 385 272 86 25 chr1 55447784 55447946 -226745718 - MIR SINE MIR -71 191 20 465 294 35 18 chr1 55448652 55448822 -226744842 - MIR3 SINE MIR -6 202 30 694 233 22 118 chr1 55448873 55449144 -226744520 + MIR SINE MIR 8 252 -10 1339 133 96 11 chr1 55450455 55450726 -226742938 + Tigger5 DNA MER2_type 2024 2317 -6 243 215 0 0 chr1 55450927 55450992 -226742672 + (TG)n Simple_repeat Simple_repeat 2 66 0 378 0 0 0 chr1 55450992 55451034 -226742630 + (GA)n Simple_repeat Simple_repeat 1 42 0 467 272 10 0 chr1 55451529 55451632 -226742032 - L2 LINE L2 0 3313 3210 511 213 86 63 chr1 55452171 55452345 -226741319 + MIR3 SINE MIR 21 198 -10 396 281 31 31 chr1 55452772 55452932 -226740732 + MIR SINE MIR 103 262 0 297 316 0 0 chr1 55453140 55453216 -226740448 + L2 LINE L2 3236 3311 -2 417 345 201 25 chr1 55453225 55454149 -226739515 + L2 LINE L2 749 1835 -1479 200 342 13 13 chr1 55454152 55454228 -226739436 + L2 LINE L2 2059 2134 -1180 258 309 128 55 chr1 55454340 55454411 -226739253 + L2 LINE L2 2804 2868 -445 2375 74 3 0 chr1 55454411 55454708 -226738956 - AluY SINE Alu -13 298 1 258 309 128 55 chr1 55454708 55455018 -226738646 + L2 LINE L2 2868 3213 -100 185 261 22 0 chr1 55455086 55455132 -226738532 + L2 LINE L2 3264 3310 -3 13430 121 16 20 chr1 55455615 55456240 -226737424 - Tigger1 DNA MER2_type -208 2210 1584 2427 78 3 7 chr1 55456240 55456546 -226737118 - AluY SINE Alu -6 305 1 1900 136 0 24 chr1 55456551 55456846 -226736818 - AluSx SINE Alu -22 290 3 13430 121 16 20 chr1 55456846 55458433 -226735231 - Tigger1 DNA MER2_type -838 1580 1 235 284 15 0 chr1 55458486 55458553 -226735111 - MIR3 SINE MIR -19 189 122 279 114 0 0 chr1 55458881 55458925 -226734739 + (GA)n Simple_repeat Simple_repeat 1 44 0 241 224 200 32 chr1 55459043 55459168 -226734496 + HsTC2 DNA Tc2 11 156 -1742 * 893 222 71 38 chr1 55459152 55459517 -226734147 + HsTC2 DNA Tc2 1284 1836 -62 35023 92 14 10 chr1 55459521 55465638 -226728026 - L1PA6 LINE L1 -6 6148 11 389 154 13 13 chr1 55465649 55465727 -226727937 + HsTC2 DNA Tc2 1821 1898 0 582 298 20 12 chr1 55465886 55466141 -226727523 + MIR SINE MIR 5 261 -1 2334 99 0 3 chr1 55466145 55466448 -226727216 - AluSg SINE Alu -8 302 1 211 243 100 0 chr1 55466485 55466555 -226727109 - MIR SINE MIR -57 205 129 394 261 72 36 chr1 55467860 55467998 -226725666 + MIR SINE MIR 48 190 -72 196 260 120 0 chr1 55468068 55468118 -226725546 + MIR3 SINE MIR 111 166 -42 409 253 171 0 chr1 55468978 55469136 -226724528 - MIR SINE MIR -66 196 12 186 282 12 82 chr1 55469671 55469756 -226723908 - MIR SINE MIR -74 188 110 240 301 125 22 chr1 55469794 55469930 -226723734 - MIR SINE MIR -50 212 63 1297 304 67 31 chr1 55470299 55470550 -226723114 + L1ME1 LINE L1 42 283 -6113 1061 130 31 21 chr1 55470550 55470742 -226722922 + L1PB1 LINE L1 5958 6151 0 1297 304 67 31 chr1 55470742 55471519 -226722145 + L1ME1 LINE L1 282 1107 -5289 2436 241 71 23 chr1 55471529 55472574 -226721090 + L1ME1 LINE L1 4552 5545 -690 180 97 0 0 chr1 55472574 55472605 -226721059 + (TTG)n Simple_repeat Simple_repeat 2 32 0 7626 26 1 0 chr1 55472611 55474152 -226719512 - L1PA3 LINE L1 -3 6152 4611 2436 241 71 23 chr1 55474152 55474702 -226718962 + L1ME1 LINE L1 5549 6230 -5 727 333 149 17 chr1 55475008 55475665 -226717999 - L2 LINE L2 -788 2526 1783 5952 49 7 0 chr1 55475959 55476696 -226716968 + L1PA8 LINE L1 5417 6158 -14 384 322 86 20 chr1 55476730 55477081 -226716583 + L1ME4a LINE L1 5330 5703 -2105 196 130 43 0 chr1 55477192 55477238 -226716426 + (TA)n Simple_repeat Simple_repeat 2 49 0 3971 156 37 51 chr1 55477239 55478243 -226715421 - MER11C LTR ERVK 0 1071 1 218 215 0 15 chr1 55478243 55478308 -226715356 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 579 199 121 7 chr1 55478312 55478453 -226715211 - MER11A LTR ERVK -692 574 418 352 232 73 45 chr1 55478646 55478672 -226714992 + L1ME4a LINE L1 5937 5961 -160 3513 107 6 10 chr1 55478672 55479185 -226714479 - MER9 LTR ERVK 0 511 1 352 232 73 45 chr1 55479185 55479335 -226714329 + L1ME4a LINE L1 5961 6118 -3 241 298 176 0 chr1 55479548 55479679 -226713985 - MIR SINE MIR -20 242 89 22 35 0 0 chr1 55479761 55479790 -226713874 + AT_rich Low_complexity Low_complexity 1 29 0 348 342 124 13 chr1 55480350 55480560 -226713104 - MIR SINE MIR -7 255 25 195 300 0 0 chr1 55481045 55481095 -226712569 - L3 LINE CR1 -69 1508 1459 231 322 93 70 chr1 55481654 55481912 -226711752 + L2 LINE L2 1703 1966 -1348 395 245 11 0 chr1 55481920 55482014 -226711650 + L2 LINE L2 2234 2328 -986 2060 120 152 13 chr1 55482129 55482505 -226711159 - MSTA LTR MaLR 0 428 1 301 314 29 0 chr1 55482547 55482649 -226711015 - MIR SINE MIR -56 206 102 212 231 19 0 chr1 55482687 55482739 -226710925 - L2 LINE L2 0 3272 3220 241 188 0 125 chr1 55482979 55483043 -226710621 + MIR SINE MIR 137 192 -70 397 328 8 8 chr1 55483309 55483428 -226710236 - MIR SINE MIR -110 152 34 207 100 0 0 chr1 55484543 55484573 -226709091 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 244 250 36 0 chr1 55484586 55484642 -226709022 + MIR SINE MIR 22 79 -183 393 345 64 36 chr1 55484898 55485118 -226708546 - L2 LINE L2 -411 2903 2678 1901 136 0 69 chr1 55485208 55485569 -226708095 + MER1B DNA MER1_type 2 337 -2 630 258 45 27 chr1 55485652 55485885 -226707779 + MIR SINE MIR 15 251 -11 31 42 0 42 chr1 55486048 55486119 -226707545 + AT_rich Low_complexity Low_complexity 1 68 0 265 386 19 25 chr1 55486131 55486289 -226707375 - MIR SINE MIR -71 191 35 479 305 53 127 chr1 55486356 55486926 -226706738 + L2 LINE L2 2741 3272 0 183 298 0 0 chr1 55487320 55487367 -226706297 + MIR SINE MIR 105 151 -111 216 0 0 0 chr1 55487740 55487764 -226705900 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 339 78 0 0 chr1 55487819 55487870 -226705794 + (CA)n Simple_repeat Simple_repeat 2 52 0 265 306 61 116 chr1 55487921 55488317 -226705347 - L2 LINE L2 -86 3186 2813 299 247 24 12 chr1 55488597 55488682 -226704982 + MIR SINE MIR 41 126 -136 632 303 64 8 chr1 55488727 55488961 -226704703 - MIR SINE MIR -2 260 14 4611 106 31 16 chr1 55488992 55489702 -226703962 + L1MA2 LINE L1 5584 6304 0 330 291 31 12 chr1 55490527 55490640 -226703024 - MIR SINE MIR -92 116 3 218 194 167 42 chr1 55490771 55490843 -226702821 - MIR SINE MIR -107 155 75 387 306 91 0 chr1 55491330 55491451 -226702213 + MIR SINE MIR 60 191 -71 265 254 165 29 chr1 55493598 55493870 -226699794 + L1ME4a LINE L1 5796 6104 -17 318 276 68 91 chr1 55493896 55494117 -226699547 + L2 LINE L2 2897 3112 -160 245 179 0 18 chr1 55494270 55494283 -226699381 + (TA)n Simple_repeat Simple_repeat 1 13 -42 2420 77 0 3 chr1 55494283 55494583 -226699081 + AluY SINE Alu 1 299 -12 245 179 0 18 chr1 55494583 55494625 -226699039 + (TA)n Simple_repeat Simple_repeat 13 55 0 375 170 0 85 chr1 55494704 55494798 -226698866 + U13 snRNA snRNA 17 102 -2 470 239 31 25 chr1 55494975 55495134 -226698530 - MER103 DNA DNA -3 163 4 321 361 56 0 chr1 55495313 55495457 -226698207 - MIR SINE MIR -10 252 101 200 339 92 0 chr1 55495626 55495735 -226697929 - L2 LINE L2 -1 3271 3153 223 297 69 30 chr1 55495812 55495913 -226697751 - MER5A DNA MER1_type -22 167 63 21 36 0 0 chr1 55496679 55496707 -226696957 + AT_rich Low_complexity Low_complexity 1 28 0 328 192 34 44 chr1 55497000 55497100 -226696564 + MIR3 SINE MIR 101 199 -9 439 309 20 0 chr1 55497132 55497281 -226696383 + MIR SINE MIR 49 200 -62 225 322 67 11 chr1 55497265 55497355 -226696309 - MIR SINE MIR -156 106 12 * 477 317 18 18 chr1 55497529 55497693 -226695971 + MIR SINE MIR 96 259 -3 22 0 0 0 chr1 55497726 55497748 -226695916 + AT_rich Low_complexity Low_complexity 1 22 0 419 272 68 7 chr1 55498455 55498602 -226695062 - MIR SINE MIR -61 201 46 866 286 13 0 chr1 55498644 55498878 -226694786 - MIR SINE MIR 0 262 26 203 283 0 0 chr1 55499308 55499354 -226694310 - L2 LINE L2 -10 3303 3258 1298 234 112 75 chr1 55499644 55500162 -226693502 - MLT1F LTR MaLR 0 542 6 6894 61 0 0 chr1 55500381 55501373 -226692291 - L1PA7 LINE L1 0 6154 5158 2218 55 13 0 chr1 55501374 55501681 -226691983 + L1P LINE L1 4887 5197 -949 * 12951 138 15 110 chr1 55501673 55504801 -226688863 - L1P LINE L1 -3305 2841 12 303 234 19 75 chr1 55505183 55505290 -226688374 + MIR SINE MIR 70 170 -92 490 278 118 0 chr1 55505298 55505467 -226688197 + MIR SINE MIR 73 261 -1 282 56 0 0 chr1 55505508 55505544 -226688120 + (ATG)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr1 55505729 55505759 -226687905 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 552 317 49 27 chr1 55505962 55506186 -226687478 + MIR SINE MIR 28 256 -6 236 328 78 0 chr1 55506211 55506339 -226687325 + L1ME LINE L1 5562 5699 -422 265 327 125 0 chr1 55506496 55506600 -226687064 - L2 LINE L2 -2 3270 3154 318 300 68 132 chr1 55506640 55506950 -226686714 + L2 LINE L2 2983 3272 0 219 264 19 0 chr1 55507956 55508009 -226685655 + MIR SINE MIR 84 137 -71 434 323 18 72 chr1 55508627 55508850 -226684814 + L3 LINE CR1 1335 1545 -32 294 246 0 41 chr1 55508935 55509106 -226684558 + GA-rich Low_complexity Low_complexity 3 166 0 196 297 97 103 chr1 55510798 55510943 -226682721 - L2 LINE L2 -196 3076 2933 27 29 0 0 chr1 55511194 55511228 -226682436 + AT_rich Low_complexity Low_complexity 1 34 0 1128 135 10 0 chr1 55511246 55511438 -226682226 - MER2 DNA MER2_type -128 217 24 337 271 83 8 chr1 55511478 55511627 -226682037 - L1ME LINE L1 -429 5735 5576 830 140 55 37 chr1 55512778 55512942 -226680722 - L1MB5 LINE L1 -8 6166 6000 428 277 61 0 chr1 55512962 55513110 -226680554 - MIR SINE MIR -6 256 100 1580 113 0 4 chr1 55513199 55513439 -226680225 + L1PB3 LINE L1 5914 6152 -2 316 195 30 0 chr1 55513440 55513604 -226680060 + (TA)n Simple_repeat Simple_repeat 1 169 0 35 41 0 0 chr1 55513605 55513654 -226680010 + AT_rich Low_complexity Low_complexity 1 49 0 453 194 20 13 chr1 55513686 55513987 -226679677 + (TA)n Simple_repeat Simple_repeat 1 303 0 400 263 17 17 chr1 55514076 55514194 -226679470 - MLT1H LTR MaLR -6 543 426 * 662 272 18 35 chr1 55514181 55514464 -226679200 - MLT1H LTR MaLR -271 278 1 463 310 115 22 chr1 55515141 55515367 -226678297 - MIR SINE MIR -13 249 3 269 387 101 12 chr1 55515473 55515641 -226678023 - L2 LINE L2 -1 3271 3089 256 388 71 33 chr1 55515818 55516117 -226677547 - L2 LINE L2 -247 3025 2717 2135 118 24 0 chr1 55516140 55516427 -226677237 + AluSp SINE Alu 1 294 -19 557 349 35 19 chr1 55516495 55516753 -226676911 - MIR SINE MIR 0 262 1 827 248 118 27 chr1 55516783 55517114 -226676550 - L2 LINE L2 -17 3296 2936 * 1200 297 148 16 chr1 55517109 55517745 -226675919 - L2 LINE L2 -1214 2100 1381 1043 354 62 12 chr1 55518178 55518664 -226675000 - L2 LINE L2 -1931 1383 874 221 290 0 29 chr1 55518873 55518942 -226674722 + MIR3 SINE MIR 141 207 -1 290 130 0 19 chr1 55519413 55519467 -226674197 + (ATG)n Simple_repeat Simple_repeat 1 53 0 180 152 0 0 chr1 55520094 55520127 -226673537 + CT-rich Low_complexity Low_complexity 1 33 0 257 301 65 21 chr1 55520404 55520497 -226673167 + MIR SINE MIR 16 112 -96 180 321 57 0 chr1 55520787 55520840 -226672824 - MIR SINE MIR -68 140 85 571 261 0 33 chr1 55521378 55521531 -226672133 + MIR SINE MIR 7 154 -108 327 244 146 0 chr1 55521808 55521890 -226671774 + L2 LINE L2 3179 3272 0 264 271 21 73 chr1 55521936 55522032 -226671632 + L2 LINE L2 3181 3271 -42 290 315 0 0 chr1 55522049 55522122 -226671542 + L2 LINE L2 3200 3272 0 569 317 126 26 chr1 55522406 55522677 -226670987 - L2 LINE L2 -557 2757 2460 294 388 39 0 chr1 55522700 55522829 -226670835 + L2 LINE L2 3136 3269 -3 813 239 23 66 chr1 55523085 55523185 -226670479 + MIR SINE MIR 13 116 -146 2558 55 13 0 chr1 55523185 55523494 -226670170 - AluSp SINE Alu 0 313 1 813 239 23 66 chr1 55523494 55523652 -226670012 + MIR SINE MIR 116 260 -2 342 254 180 16 chr1 55523745 55523867 -226669797 - MIR SINE MIR -119 143 2 598 234 31 15 chr1 55524736 55524905 -226668759 + MIR SINE MIR 38 208 -54 300 284 53 0 chr1 55525736 55525831 -226667833 + MIR SINE MIR 61 160 -102 233 272 33 54 chr1 55526031 55526123 -226667541 - MIR SINE MIR -7 255 166 240 303 148 26 chr1 55526749 55526904 -226666760 + L2 LINE L2 2616 2789 -525 267 195 390 0 chr1 55527275 55527352 -226666312 - MIR SINE MIR -69 139 33 469 298 115 24 chr1 55528025 55528233 -226665431 + MIR SINE MIR 4 230 -32 283 319 137 71 chr1 55528284 55528466 -226665198 - MIR SINE MIR -47 215 22 213 290 0 32 chr1 55528461 55528523 -226665141 - L2 LINE L2 -50 3263 3204 * 379 236 24 11 chr1 55529719 55529835 -226663829 + MIR SINE MIR 54 172 -65 424 305 117 30 chr1 55530877 55531121 -226662543 + L2 LINE L2 2686 3014 -258 2397 136 5 19 chr1 55531121 55531490 -226662174 + THE1B LTR MaLR 1 364 0 424 305 117 30 chr1 55531490 55531578 -226662086 + L2 LINE L2 3014 3093 -179 311 270 40 71 chr1 55531688 55531814 -226661850 - L2 LINE L2 -2 3270 3149 372 284 63 39 chr1 55532012 55532139 -226661525 + MIR3 SINE MIR 30 159 -49 578 259 52 11 chr1 55532224 55532398 -226661266 + MER117 DNA MER1_type 13 193 -4 207 194 0 0 chr1 55532643 55532679 -226660985 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 350 233 56 0 chr1 55532788 55532878 -226660786 - MIR SINE MIR -66 196 102 240 248 24 80 chr1 55532889 55533014 -226660650 + MIR SINE MIR 101 218 -44 182 315 306 0 chr1 55533101 55533212 -226660452 - MIR SINE MIR -98 164 20 268 393 74 15 chr1 55534317 55534452 -226659212 - L2 LINE L2 -8 3264 3122 254 337 129 0 chr1 55534643 55534744 -226658920 + L2 LINE L2 3200 3313 0 4656 143 10 0 chr1 55534754 55535532 -226658132 - L1PA16 LINE L1 -5 6161 5376 25 31 0 0 chr1 55535540 55535572 -226658092 + AT_rich Low_complexity Low_complexity 1 32 0 2229 122 0 0 chr1 55535592 55535895 -226657769 - AluSq SINE Alu -10 303 1 360 132 44 0 chr1 55535897 55535965 -226657699 - L1PA16 LINE L1 -768 5397 5327 4845 207 28 16 chr1 55536171 55536825 -226656839 - L1M2 LINE L1 -2646 4202 3557 2216 95 0 20 chr1 55536825 55537129 -226656535 - AluY SINE Alu -13 298 1 4845 207 28 16 chr1 55537129 55537883 -226655781 - L1M2 LINE L1 -3291 3557 2777 419 185 0 43 chr1 55537884 55537976 -226655688 - AluJ/FRAM SINE Alu -7 305 218 1461 223 3 17 chr1 55538138 55538438 -226655226 - AluJo SINE Alu -16 296 1 3369 222 48 22 chr1 55538438 55539086 -226654578 - L1M2 LINE L1 -4082 2767 2073 2227 153 11 21 chr1 55539086 55539465 -226654199 + THE1C LTR MaLR 1 375 0 3369 222 48 22 chr1 55539465 55539972 -226653692 - L1M2 LINE L1 -4776 2073 1581 226 159 0 0 chr1 55540079 55540123 -226653541 - Alu SINE Alu -2 300 257 1683 208 0 7 chr1 55540127 55540425 -226653239 - AluJb SINE Alu -16 296 1 450 254 22 109 chr1 55540436 55540857 -226652807 - L1M2 LINE L1 -5297 1552 937 1303 320 38 45 chr1 55540953 55541637 -226652027 - L1PA15-16 LINE L1 -6116 733 55 243 226 66 66 chr1 55541606 55541648 -226652016 - L1PA15-16 LINE L1 -6715 134 93 * 1897 147 14 0 chr1 55541648 55541933 -226651731 - AluSx SINE Alu -23 289 1 243 226 66 66 chr1 55541933 55541996 -226651668 - L1PA15-16 LINE L1 -6755 94 29 713 269 114 4 chr1 55542367 55542594 -226651070 - MIR SINE MIR -10 252 1 374 346 142 31 chr1 55542700 55543087 -226650577 - L3 LINE CR1 -5 1572 1143 3646 195 91 36 chr1 55543596 55544397 -226649267 - MER21B LTR ERV1 -18 845 1 250 331 45 10 chr1 55544615 55544733 -226648931 - MIR SINE MIR -26 182 50 250 317 12 12 chr1 55544769 55544851 -226648813 - L3 LINE CR1 -443 1134 1053 4067 185 26 14 chr1 55545582 55546951 -226646713 + L1MB1 LINE L1 4650 6037 -131 1205 122 0 0 chr1 55546951 55547115 -226646549 + AluSp SINE Alu 134 297 -16 543 168 61 15 chr1 55547116 55547247 -226646417 + L1MB1 LINE L1 6030 6166 -2 1553 184 13 43 chr1 55547565 55547869 -226645795 - AluJo SINE Alu -10 302 8 280 208 19 0 chr1 55548203 55548256 -226645408 - MIR SINE MIR -87 121 68 295 324 103 7 chr1 55548867 55549003 -226644661 + MIR3 SINE MIR 21 169 -39 208 0 62 0 chr1 55549605 55549637 -226644027 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 276 359 55 32 chr1 55549860 55550080 -226643584 + L3 LINE CR1 982 1206 -371 576 0 0 0 chr1 55550156 55550220 -226643444 + (GGAGA)n Simple_repeat Simple_repeat 1 64 0 1103 18 58 12 chr1 55550739 55550910 -226642754 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1323 194 28 0 chr1 55550916 55551163 -226642501 - AluJo SINE Alu -34 278 25 571 220 18 114 chr1 55551363 55551590 -226642074 - MIR SINE MIR -57 205 1 26 50 0 0 chr1 55552017 55552057 -226641607 + AT_rich Low_complexity Low_complexity 1 40 0 199 319 166 18 chr1 55552628 55552797 -226640867 - L3 LINE CR1 -403 1174 981 407 381 38 17 chr1 55552914 55553203 -226640461 - L2 LINE L2 -421 2893 2599 305 286 122 56 chr1 55553453 55553666 -226639998 - MIR SINE MIR -14 248 22 312 221 154 19 chr1 55554725 55554829 -226638835 + MIR SINE MIR 111 228 -34 188 167 62 42 chr1 55554949 55554997 -226638667 - L2 LINE L2 -88 3184 3136 672 258 35 50 chr1 55555202 55555452 -226638212 - MIR SINE MIR -6 256 14 33 25 0 0 chr1 55556241 55556281 -226637383 + AT_rich Low_complexity Low_complexity 1 40 0 2057 191 75 0 chr1 55556615 55557013 -226636651 + MSTA LTR MaLR 1 428 0 200 280 61 106 chr1 55557371 55557503 -226636161 - L2 LINE L2 -94 3178 3053 207 355 45 0 chr1 55559010 55559120 -226634544 + L2 LINE L2 2550 2664 -650 328 241 25 13 chr1 55559192 55559271 -226634393 - MIR SINE MIR -108 154 75 2173 133 43 8 chr1 55559560 55559929 -226633735 - L1PA16 LINE L1 0 6166 5785 312 355 76 67 chr1 55560545 55561007 -226632657 + L2 LINE L2 2807 3272 0 478 336 186 4 chr1 55561151 55561431 -226632233 - L3 LINE CR1 -1 1576 1246 306 293 30 20 chr1 55561765 55561864 -226631800 - MIR SINE MIR -78 130 31 2451 104 34 8 chr1 55562012 55562367 -226631297 + THE1B LTR MaLR 1 364 0 537 314 53 14 chr1 55563656 55563863 -226629801 + MIR SINE MIR 48 262 0 392 303 82 34 chr1 55564001 55564209 -226629455 + MIR SINE MIR 21 238 -24 208 316 58 36 chr1 55564570 55564709 -226628955 - L3 LINE CR1 -80 1497 1356 23 54 0 0 chr1 55564963 55565000 -226628664 + AT_rich Low_complexity Low_complexity 1 37 0 814 247 23 0 chr1 55566831 55567005 -226626659 - MER45A DNA AcHobo 0 178 1 201 391 45 8 chr1 55567251 55567384 -226626280 + MIR SINE MIR 52 189 -73 2380 88 0 0 chr1 55567636 55567941 -226625723 + AluY SINE Alu 1 305 -6 298 318 45 0 chr1 55568015 55568103 -226625561 - L2 LINE L2 -30 3242 3151 392 290 65 8 chr1 55569299 55569423 -226624241 - MIR SINE MIR -112 150 20 254 326 73 71 chr1 55569748 55570088 -226623576 + L2 LINE L2 2201 2541 -773 1715 167 90 6 chr1 55570101 55570436 -226623228 - MLT1A1 LTR MaLR 0 365 3 231 332 42 58 chr1 55570437 55570627 -226623037 + L2 LINE L2 3126 3312 -1 1545 220 207 25 chr1 55571492 55572110 -226621554 - L2 LINE L2 -6 3307 2580 370 350 58 27 chr1 55572254 55572514 -226621150 + L2 LINE L2 2832 3099 -173 379 307 87 0 chr1 55573228 55573378 -226620286 - MIR SINE MIR -66 196 34 431 280 42 53 chr1 55573411 55573600 -226620064 + MIR3 SINE MIR 9 195 -13 332 325 31 15 chr1 55574430 55574577 -226619087 - MIR SINE MIR -65 143 40 285 207 37 12 chr1 55574925 55575007 -226618657 + (CA)n Simple_repeat Simple_repeat 1 84 0 1948 172 17 3 chr1 55575017 55575365 -226618299 + MER47A DNA MER2_type 1 353 -13 837 176 28 22 chr1 55575366 55575548 -226618116 + L1MB8 LINE L1 5986 6168 -10 2381 73 0 10 chr1 55575717 55576018 -226617646 + AluY SINE Alu 1 298 -13 385 288 20 0 chr1 55576272 55576418 -226617246 - L1ME LINE L1 -320 5801 5653 274 262 9 103 chr1 55576716 55576851 -226616813 - MIR SINE MIR -82 126 4 775 259 87 35 chr1 55577103 55577389 -226616275 + MLT1J1 LTR MaLR 11 311 -135 291 375 36 62 chr1 55577537 55577812 -226615852 - L2 LINE L2 -98 3174 2907 315 252 182 3 chr1 55578121 55578251 -226615413 + MIR3 SINE MIR 7 153 -65 238 333 71 64 chr1 55578355 55578496 -226615168 + MIR3 SINE MIR 40 181 -27 194 286 16 0 chr1 55578927 55578990 -226614674 + L3 LINE CR1 248 311 -1266 223 340 92 26 chr1 55579090 55579243 -226614421 - MIR3 SINE MIR -43 165 3 315 0 0 0 chr1 55579298 55579333 -226614331 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1953 135 11 3 chr1 55579346 55579628 -226614036 - AluSx SINE Alu -28 284 1 474 206 57 68 chr1 55579838 55580108 -226613556 - L1MD2 LINE L1 -15 6344 6027 1851 124 48 92 chr1 55580108 55580290 -226613374 + THE1B LTR MaLR 1 159 -205 2195 82 0 27 chr1 55580290 55580583 -226613081 + AluY SINE Alu 17 301 -10 1851 124 48 92 chr1 55580583 55580779 -226612885 + THE1B LTR MaLR 159 362 -2 474 206 57 68 chr1 55580779 55580803 -226612861 - L1MD2 LINE L1 -332 6027 6004 558 0 0 0 chr1 55580813 55580875 -226612789 + (TA)n Simple_repeat Simple_repeat 1 62 0 3437 198 85 14 chr1 55580875 55581780 -226611884 - L1MDa LINE L1 -4215 2325 1353 1851 253 74 28 chr1 55581779 55582357 -226611307 - L1MDa LINE L1 -5914 626 22 * 384 273 78 93 chr1 55582704 55582960 -226610704 + L1ME4a LINE L1 5708 5908 -213 699 300 20 24 chr1 55582999 55583252 -226610412 - L2 LINE L2 0 3313 3062 35 63 0 0 chr1 55583302 55583365 -226610299 + AT_rich Low_complexity Low_complexity 1 63 0 1471 332 88 47 chr1 55583580 55584727 -226608937 + L2 LINE L2 1764 2957 -357 286 362 31 0 chr1 55584864 55584991 -226608673 + L2 LINE L2 3173 3303 -10 203 256 0 0 chr1 55584997 55585036 -226608628 + polypurine Low_complexity Low_complexity 2 40 0 221 263 62 12 chr1 55585139 55585219 -226608445 - MIR SINE MIR -72 190 107 195 173 39 96 chr1 55585844 55585896 -226607768 + L2 LINE L2 3249 3297 -16 337 179 24 0 chr1 55586318 55586402 -226607262 + (TA)n Simple_repeat Simple_repeat 1 86 0 259 203 51 0 chr1 55586931 55586990 -226606674 + L2 LINE L2 3232 3293 -20 267 155 282 0 chr1 55588021 55588092 -226605572 - MIR SINE MIR 0 262 172 187 229 0 42 chr1 55588092 55588140 -226605524 - L2 LINE L2 0 3272 3227 204 40 0 0 chr1 55588211 55588236 -226605428 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 289 247 41 0 chr1 55588283 55588356 -226605308 + MIR SINE MIR 73 148 -114 282 148 0 0 chr1 55588442 55588496 -226605168 + (TTA)n Simple_repeat Simple_repeat 1 54 0 351 0 0 0 chr1 55588558 55588597 -226605067 + (CA)n Simple_repeat Simple_repeat 2 40 0 33 25 0 0 chr1 55588944 55588984 -226604680 + AT_rich Low_complexity Low_complexity 1 40 0 787 306 50 4 chr1 55589335 55589577 -226604087 + MIR SINE MIR 8 260 -2 211 283 87 80 chr1 55589786 55589924 -226603740 + MIR3 SINE MIR 32 170 -38 389 314 29 0 chr1 55590298 55590403 -226603261 - MIR SINE MIR -108 154 47 329 305 99 58 chr1 55591067 55591290 -226602374 - MIR SINE MIR -25 237 6 328 229 60 0 chr1 55591598 55591681 -226601983 - MER5B DNA MER1_type -11 167 80 * 394 299 73 30 chr1 55591679 55591843 -226601821 - MIR SINE MIR -61 201 31 358 362 48 22 chr1 55591846 55592075 -226601589 + MIR SINE MIR 19 253 -9 4889 144 26 11 chr1 55592521 55593558 -226600106 + L1MA4 LINE L1 5138 6187 -113 4100 261 114 5 chr1 55593565 55593741 -226599923 + L1PA13 LINE L1 1 156 -6631 2299 104 3 0 chr1 55593741 55594040 -226599624 - AluSc SINE Alu -8 301 2 4100 261 114 5 chr1 55594040 55594995 -226598669 + L1PA13 LINE L1 156 1255 -5532 5064 186 23 7 chr1 55595000 55596686 -226596978 + L1PA13 LINE L1 1395 3119 -3678 10679 163 21 0 chr1 55596695 55599466 -226594198 + L1PA13 LINE L1 4011 6809 -5 631 161 0 0 chr1 55599491 55599621 -226594043 + L1MA4 LINE L1 6167 6296 -4 660 269 148 34 chr1 55599649 55600304 -226593360 + L1MC4a LINE L1 4298 5027 -1119 4769 59 6 2 chr1 55600479 55601119 -226592545 - L1PA3 LINE L1 -5500 646 4 * 37150 35 2 1 chr1 55601109 55606611 -226587053 + L1PA3 LINE L1 640 6147 -8 536 292 70 73 chr1 55606708 55607434 -226586230 + L1MC4a LINE L1 5265 5988 -176 28 29 0 0 chr1 55607597 55607632 -226586032 + AT_rich Low_complexity Low_complexity 1 35 0 327 253 57 19 chr1 55607674 55607832 -226585832 - L1M4 LINE L1 -1199 4947 4784 2179 105 3 0 chr1 55607851 55608145 -226585519 - AluSx SINE Alu -17 295 1 180 218 192 26 chr1 55608886 55608964 -226584700 + MIR SINE MIR 99 189 -73 233 276 17 6 chr1 55609004 55609178 -226584486 + (TA)n Simple_repeat Simple_repeat 1 176 0 26 30 0 0 chr1 55609784 55609817 -226583847 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr1 55609909 55609935 -226583729 + (CA)n Simple_repeat Simple_repeat 2 27 0 224 350 47 59 chr1 55609985 55610239 -226583425 - L2 LINE L2 -382 2932 2682 184 365 96 0 chr1 55610249 55610353 -226583311 - L2 LINE L2 -38 3275 3162 2158 110 35 62 chr1 55610661 55610703 -226582961 - THE1B LTR MaLR 0 364 322 2203 110 0 0 chr1 55610703 55610994 -226582670 + AluY SINE Alu 1 291 -20 2158 110 35 62 chr1 55610994 55611325 -226582339 - THE1B LTR MaLR -42 322 1 876 172 7 21 chr1 55611695 55611714 -226581950 - FRAM SINE Alu -149 163 145 369 0 0 0 chr1 55611714 55611755 -226581909 + (CA)n Simple_repeat Simple_repeat 2 42 0 876 172 7 21 chr1 55611755 55611880 -226581784 - FRAM SINE Alu -167 145 21 916 268 152 60 chr1 55612144 55612626 -226581038 + MLT1H LTR MaLR 1 526 -23 3340 151 36 5 chr1 55612627 55613204 -226580460 + LTR49 LTR ERV1 1 595 0 27369 153 78 47 chr1 55613206 55614337 -226579327 + LTR49-int LTR ERV1 1 1095 -5236 376 274 0 0 chr1 55614337 55614410 -226579254 + tRNA-Glu-GAG tRNA tRNA 3 75 0 27369 153 78 47 chr1 55614410 55614821 -226578843 + LTR49-int LTR ERV1 1095 1492 -4839 348 83 0 0 chr1 55614821 55614869 -226578795 + (CA)n Simple_repeat Simple_repeat 1 48 0 27369 153 78 47 chr1 55614869 55616971 -226576693 + LTR49-int LTR ERV1 1492 3527 -2804 2206 102 3 22 chr1 55616971 55617286 -226576378 - AluY SINE Alu -2 309 1 27369 153 78 47 chr1 55617286 55619706 -226573958 + LTR49-int LTR ERV1 3527 6331 0 3271 142 51 3 chr1 55619708 55620273 -226573391 + LTR49 LTR ERV1 3 594 -1 248 277 0 0 chr1 55620333 55620398 -226573266 + GA-rich Low_complexity Low_complexity 2 66 0 211 364 13 0 chr1 55620761 55620838 -226572826 + MIR SINE MIR 34 111 -97 266 296 74 52 chr1 55620970 55621105 -226572559 - MIR3 SINE MIR -68 140 3 512 283 68 48 chr1 55621260 55621495 -226572169 - MIR SINE MIR -19 243 5 33 43 0 0 chr1 55622090 55622137 -226571527 + AT_rich Low_complexity Low_complexity 1 47 0 398 293 26 17 chr1 55622847 55622963 -226570701 + MIR SINE MIR 30 146 -62 4058 150 4 26 chr1 55622998 55623720 -226569944 + LTR8A LTR ERV1 11 716 -11 515 245 62 70 chr1 55624034 55624275 -226569389 - L2 LINE L2 -1 3312 3074 196 254 115 49 chr1 55624313 55624435 -226569229 - MIR SINE MIR -13 249 120 1598 217 37 15 chr1 55624470 55624875 -226568789 - LTR52 LTR ERVL -2 419 6 452 128 23 35 chr1 55624920 55625006 -226568658 + MER21B LTR ERV1 1 85 -778 1488 222 58 37 chr1 55625017 55625542 -226568122 + MER21B LTR ERV1 365 856 -7 15265 37 23 2 chr1 55625812 55631681 -226561983 + L1PA2 LINE L1 1 6154 -1 249 33 0 0 chr1 55632320 55632350 -226561314 + (GA)n Simple_repeat Simple_repeat 2 31 0 231 275 9 9 chr1 55632483 55632592 -226561072 + L1M3d LINE L1 1028 1136 -4755 432 228 106 55 chr1 55632600 55632837 -226560827 + L1ME3A LINE L1 5788 6036 -134 644 245 81 21 chr1 55632964 55633347 -226560317 + L1M3d LINE L1 2755 3160 -2810 258 260 34 38 chr1 55633703 55633834 -226559830 - MLT1H LTR MaLR -238 171 65 240 227 61 0 chr1 55633894 55633960 -226559704 + Tigger2 DNA MER2_type 2 71 -2647 1377 186 11 49 chr1 55634038 55634302 -226559362 + AluJo SINE Alu 19 272 -40 515 248 31 37 chr1 55634304 55634465 -226559199 - MER8 DNA MER2_type -79 160 1 718 272 46 0 chr1 55634465 55634726 -226558938 + L1M3d LINE L1 3289 3561 -2409 713 254 121 17 chr1 55634744 55635025 -226558639 + L1ME2 LINE L1 5759 6084 -80 5627 218 63 52 chr1 55635025 55636762 -226556902 + MER52A LTR ERV1 1 1755 0 713 254 121 17 chr1 55636762 55636827 -226556837 + L1ME2 LINE L1 6084 6141 -23 293 327 98 7 chr1 55637384 55637534 -226556130 + MIR SINE MIR 19 181 -66 326 298 126 91 chr1 55637924 55638320 -226555344 + L2 LINE L2 2863 3272 0 449 326 43 95 chr1 55638497 55638844 -226554820 - L2 LINE L2 -48 3224 2896 256 362 9 43 chr1 55638852 55638968 -226554696 - MIR SINE MIR -81 127 16 504 306 25 6 chr1 55639490 55639650 -226554014 - MIR SINE MIR -75 187 25 277 257 88 26 chr1 55639781 55639894 -226553770 + MIR3 SINE MIR 88 207 -1 221 240 0 0 chr1 55640488 55640538 -226553126 - L2 LINE L2 0 3313 3264 317 276 38 148 chr1 55640538 55640802 -226552862 - L2 LINE L2 -226 3046 2812 246 143 0 0 chr1 55640802 55640837 -226552827 + MIR SINE MIR 56 90 -172 204 40 0 0 chr1 55641929 55641954 -226551710 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 488 293 44 19 chr1 55642317 55642522 -226551142 - MIR SINE MIR 0 262 53 395 299 86 11 chr1 55642524 55642698 -226550966 - MIR SINE MIR -71 191 5 1232 231 114 52 chr1 55642900 55643399 -226550265 - L1M4 LINE L1 -1955 4191 3662 404 285 46 15 chr1 55643540 55643670 -226549994 + MIR SINE MIR 20 153 -109 289 390 17 0 chr1 55643878 55644050 -226549614 + L2 LINE L2 2677 2851 -463 398 308 34 94 chr1 55644091 55644357 -226549307 + L2 LINE L2 2944 3193 -79 1116 200 59 106 chr1 55644589 55645370 -226548294 + LTR8A LTR ERV1 1 720 -7 2186 125 0 7 chr1 55645562 55645859 -226547805 - AluSx SINE Alu -17 295 1 907 16 41 0 chr1 55645862 55645984 -226547680 + (TTTTA)n Simple_repeat Simple_repeat 5 131 0 5608 101 32 13 chr1 55645985 55646755 -226546909 - L1PA10 LINE L1 -23 6145 5335 1884 138 0 71 chr1 55646755 55647080 -226546584 - AluSx SINE Alu -10 302 1 5608 101 32 13 chr1 55647080 55647632 -226546032 - L1PA10 LINE L1 -833 5335 4795 775 243 133 0 chr1 55648248 55648466 -226545198 - MIR SINE MIR -13 249 3 856 187 3 159 chr1 55648607 55648890 -226544774 + MER8 DNA MER2_type 1 239 0 2340 95 3 0 chr1 55649000 55649294 -226544370 - AluSp SINE Alu -18 295 1 226 239 90 0 chr1 55650202 55650269 -226543395 - MIR SINE MIR -104 158 86 266 98 20 0 chr1 55650624 55650675 -226542989 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 305 294 29 10 chr1 55650738 55650840 -226542824 + MIR SINE MIR 117 220 -42 2087 131 141 0 chr1 55651189 55651564 -226542100 + MSTA LTR MaLR 1 428 0 308 296 82 37 chr1 55651759 55651894 -226541770 - MIR3 SINE MIR -26 182 42 285 273 102 11 chr1 55652403 55652491 -226541173 + MIR SINE MIR 16 111 -97 371 287 20 99 chr1 55652592 55652794 -226540870 - MER5A DNA MER1_type -1 188 3 207 100 0 0 chr1 55652916 55652946 -226540718 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 237 0 0 chr1 55653024 55653062 -226540602 + MIR3 SINE MIR 133 170 -38 1292 293 59 4 chr1 55653286 55653742 -226539922 - L2 LINE L2 -257 3056 2565 679 288 76 17 chr1 55654068 55654304 -226539360 - MIR SINE MIR -11 251 2 287 259 71 0 chr1 55654313 55654398 -226539266 + MIR SINE MIR 108 198 -64 260 276 41 8 chr1 55654922 55655045 -226538619 + L1MC2 LINE L1 4509 4635 -1511 1226 201 36 95 chr1 55655386 55655774 -226537890 + MLT1A1 LTR MaLR 1 365 0 1257 168 28 6 chr1 55655836 55656176 -226537488 + L1MC2 LINE L1 5196 5539 -743 6892 62 13 0 chr1 55656176 55657540 -226536124 - L1PA7 LINE L1 0 6154 4786 5592 64 4 0 chr1 55657542 55658290 -226535374 - L1PA7 LINE L1 -4 6150 5400 4568 70 27 0 chr1 55658288 55658949 -226534715 + L1PA7 LINE L1 4717 5395 -751 * 4167 157 30 15 chr1 55658949 55659743 -226533921 + L1MC2 LINE L1 5525 6332 -12 348 296 161 19 chr1 55659925 55660297 -226533367 + L1ME4a LINE L1 5479 5903 -218 350 268 57 50 chr1 55660317 55660551 -226533113 + L1ME4a LINE L1 1115 6118 -3 341 263 167 45 chr1 55660599 55660755 -226532909 + MIR SINE MIR 88 262 0 21 36 0 0 chr1 55661256 55661284 -226532380 + AT_rich Low_complexity Low_complexity 1 28 0 346 244 74 22 chr1 55661469 55661604 -226532060 + MIR SINE MIR 53 194 -66 402 74 0 0 chr1 55661691 55661745 -226531919 + (ATG)n Simple_repeat Simple_repeat 2 55 0 289 286 13 0 chr1 55661996 55662073 -226531591 - MIR SINE MIR -180 82 5 348 349 99 0 chr1 55662395 55662547 -226531117 - MIR SINE MIR -30 232 66 1027 299 94 11 chr1 55662645 55662954 -226530710 - MLT1J LTR MaLR -15 496 135 744 199 244 54 chr1 55662954 55663229 -226530435 - MSTD LTR MaLR -1 395 45 1782 183 7 13 chr1 55663229 55663535 -226530129 - AluJb SINE Alu -8 304 1 744 199 244 54 chr1 55663535 55663591 -226530073 - MSTD LTR MaLR -351 45 1 1027 299 94 11 chr1 55663591 55663739 -226529925 - MLT1J LTR MaLR -376 135 1 1904 155 47 11 chr1 55664042 55664404 -226529260 - THE1C LTR MaLR 0 375 1 189 256 0 0 chr1 55664560 55664603 -226529061 + MIR SINE MIR 210 252 -10 24 0 0 0 chr1 55664610 55664634 -226529030 + AT_rich Low_complexity Low_complexity 1 24 0 871 279 52 22 chr1 55664635 55665040 -226528624 + L1ME LINE L1 5388 5804 -358 323 272 47 106 chr1 55665111 55665412 -226528252 + MLT1I LTR MaLR 82 364 -45 1220 263 82 23 chr1 55665718 55666155 -226527509 + MLT1C LTR MaLR 1 463 -4 21 71 0 0 chr1 55666278 55666320 -226527344 + AT_rich Low_complexity Low_complexity 1 42 0 1761 111 10 64 chr1 55666579 55666876 -226526788 - AluSx SINE Alu -6 306 26 899 109 124 0 chr1 55666951 55667088 -226526576 + AluY SINE Alu 143 296 -15 454 359 73 22 chr1 55667098 55667371 -226526293 + L2 LINE L2 2985 3271 -1 236 274 95 12 chr1 55668111 55668195 -226525469 + L2 LINE L2 3182 3272 0 1969 89 0 12 chr1 55668329 55668586 -226525078 - AluY SINE Alu -14 297 44 322 317 200 19 chr1 55668675 55668880 -226524784 - L1MEc LINE L1 -4395 2001 1760 315 294 16 32 chr1 55668878 55668978 -226524686 + L1MEc LINE L1 1308 1407 -4989 * 2269 147 46 14 chr1 55668978 55669393 -226524271 + MSTA LTR MaLR 1 428 0 315 294 16 32 chr1 55669393 55669418 -226524246 + L1MEc LINE L1 1407 1431 -4965 552 258 102 32 chr1 55669420 55669659 -226524005 - L1MEc LINE L1 -880 1696 1515 253 382 57 14 chr1 55669778 55670074 -226523590 - L2 LINE L2 -1109 2205 1897 234 240 2 58 chr1 55670080 55670098 -226523566 + MIR SINE MIR 75 92 -116 1990 175 96 46 chr1 55670098 55670579 -226523085 - MLT1D LTR MaLR 0 505 1 234 240 2 58 chr1 55670579 55670639 -226523025 + MIR SINE MIR 92 145 -63 1280 202 18 107 chr1 55670711 55671112 -226522552 - MLT1A1 LTR MaLR 0 365 1 347 348 43 0 chr1 55671637 55671752 -226521912 + MIR SINE MIR 21 140 -68 282 330 87 17 chr1 55671808 55671981 -226521683 + L2 LINE L2 2170 2354 -960 2061 125 0 0 chr1 55672329 55672630 -226521034 + AluSx SINE Alu 1 301 0 21 0 0 0 chr1 55672666 55672687 -226520977 + AT_rich Low_complexity Low_complexity 1 21 0 1960 145 0 0 chr1 55672689 55672965 -226520699 + AluSx SINE Alu 2 277 -35 271 243 14 14 chr1 55673246 55673316 -226520348 + L2 LINE L2 3199 3268 -4 1948 133 0 36 chr1 55673438 55673766 -226519898 + AluSx SINE Alu 1 312 0 5729 200 26 22 chr1 55674072 55675357 -226518307 + L1PA12 LINE L1 2 1291 -6290 435 258 11 6 chr1 55675545 55675723 -226517941 + L1 LINE L1 3388 3566 -2580 332 377 29 0 chr1 55675884 55676059 -226517605 + L1ME3A LINE L1 5777 5956 -214 2506 50 12 0 chr1 55676105 55676442 -226517222 - L1P3 LINE L1 -535 5619 5279 328 51 0 0 chr1 55676442 55676501 -226517163 + L1PA8 LINE L1 6116 6176 0 2222 99 0 0 chr1 55676502 55676784 -226516880 + AluSc SINE Alu 1 282 -27 183 42 0 0 chr1 55676794 55676818 -226516846 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr1 55676918 55676939 -226516725 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 55677017 55677039 -226516625 + AT_rich Low_complexity Low_complexity 1 22 0 217 306 232 19 chr1 55677487 55677613 -226516051 - MIR SINE MIR -73 135 11 242 230 106 18 chr1 55677652 55677765 -226515899 + L1ME LINE L1 5564 5686 -435 196 233 23 116 chr1 55678226 55678312 -226515352 + MIR SINE MIR 36 113 -95 1784 297 52 43 chr1 55678327 55678818 -226514846 + L2 LINE L2 2266 2751 -563 2476 80 0 0 chr1 55678818 55679119 -226514545 - AluY SINE Alu -10 301 1 1784 297 52 43 chr1 55679119 55679260 -226514404 + L2 LINE L2 2751 2907 -407 1447 228 51 81 chr1 55679260 55679831 -226513833 - MLT2B3 LTR ERVL 0 554 1 1784 297 52 43 chr1 55679831 55679891 -226513773 + L2 LINE L2 2907 2965 -349 441 348 0 7 chr1 55680036 55680174 -226513490 + L2 LINE L2 3172 3308 -5 264 197 145 13 chr1 55680178 55680254 -226513410 + MIR SINE MIR 131 216 -46 319 248 111 17 chr1 55680363 55680480 -226513184 + MIR SINE MIR 91 218 -44 23 33 0 0 chr1 55680641 55680671 -226512993 + AT_rich Low_complexity Low_complexity 1 30 0 204 356 59 25 chr1 55681558 55681676 -226511988 + L2 LINE L2 2925 3046 -226 293 229 0 0 chr1 55682181 55682242 -226511422 + L2 LINE L2 3211 3271 -1 501 273 86 20 chr1 55683218 55683416 -226510248 + MLT1J2 LTR MaLR 1 211 -239 2668 178 12 47 chr1 55683976 55684550 -226509114 + MER41C LTR ERV1 1 554 0 3328 162 16 54 chr1 55684557 55685224 -226508440 + MER41C-int LTR ERV1 7 648 -5298 7353 170 80 16 chr1 55685483 55686998 -226506666 + MER41C-int LTR ERV1 1083 2559 -3387 * 11434 115 50 41 chr1 55686984 55687544 -226506120 + MER41C-int LTR ERV1 2725 3279 -2667 650 47 0 0 chr1 55687544 55687629 -226506035 + L1PA2 LINE L1 6071 6155 0 11434 115 50 41 chr1 55687629 55689294 -226504370 + MER41C-int LTR ERV1 3279 4969 -977 4550 140 21 30 chr1 55689277 55690115 -226503549 + MER41C-int LTR ERV1 5116 5946 0 * 2265 169 43 86 chr1 55690115 55690545 -226503119 + MER41C LTR ERV1 1 448 -106 2328 82 0 0 chr1 55690545 55690836 -226502828 - AluY SINE Alu -1 310 20 2265 169 43 86 chr1 55690836 55690882 -226502782 + MER41C LTR ERV1 448 494 -60 2158 113 0 7 chr1 55690882 55691192 -226502472 + AluSc SINE Alu 1 308 -1 2265 169 43 86 chr1 55691192 55691293 -226502371 + MER41C LTR ERV1 494 554 0 1255 230 63 61 chr1 55691293 55691441 -226502223 + MLT1D LTR MaLR 42 188 -317 2395 81 0 10 chr1 55691441 55691751 -226501913 + AluY SINE Alu 1 307 -4 1255 230 63 61 chr1 55691751 55692063 -226501601 + MLT1D LTR MaLR 188 503 -2 193 300 131 39 chr1 55692296 55692426 -226501238 + L2 LINE L2 2828 2969 -303 340 312 61 64 chr1 55692711 55692994 -226500670 + L2 LINE L2 2929 3212 -101 2232 152 21 18 chr1 55692994 55693383 -226500281 + MLT1B LTR MaLR 1 390 0 340 312 61 64 chr1 55693383 55693445 -226500219 + L2 LINE L2 3212 3273 -40 2822 10 0 0 chr1 55693496 55693807 -226499857 - AluYa5 SINE Alu 0 311 1 1352 105 11 0 chr1 55693932 55694123 -226499541 - L1PB1 LINE L1 -17 6134 5942 2637 93 22 0 chr1 55694134 55694499 -226499165 - L1PBa LINE L1 -6490 373 1 209 105 0 26 chr1 55694739 55694777 -226498887 + (TA)n Simple_repeat Simple_repeat 2 38 0 593 296 48 26 chr1 55695024 55695213 -226498451 + MIR3 SINE MIR 14 206 -2 217 365 76 52 chr1 55695287 55695575 -226498089 + L2 LINE L2 2886 3180 -92 207 0 0 0 chr1 55695671 55695694 -226497970 + (T)n Simple_repeat Simple_repeat 1 23 0 399 248 147 56 chr1 55696011 55696209 -226497455 - MIR SINE MIR 0 262 47 415 243 54 68 chr1 55696449 55696597 -226497067 + MIR3 SINE MIR 45 190 -18 3433 183 116 13 chr1 55696846 55697595 -226496069 + LTR1B LTR ERV1 1 826 0 970 272 29 16 chr1 55697595 55697908 -226495756 + L2 LINE L2 1922 2238 -1076 2880 158 49 19 chr1 55697912 55698439 -226495225 - MER6A DNA MER2_type 0 605 63 1512 285 148 10 chr1 55698479 55699093 -226494571 + L2 LINE L2 2277 2975 -339 434 289 169 6 chr1 55700840 55701006 -226492658 - MIR SINE MIR 0 262 70 341 316 38 48 chr1 55701330 55701539 -226492125 + PABL_B LTR ERV1 1 207 -460 855 214 118 46 chr1 55701545 55701849 -226491815 + PABL_A LTR ERV1 335 660 0 253 363 11 11 chr1 55701870 55701961 -226491703 - L3 LINE CR1 -107 1470 1380 394 264 123 19 chr1 55701986 55702198 -226491466 + L1ME4a LINE L1 5665 5898 -223 308 315 164 18 chr1 55702592 55702757 -226490907 + MIR SINE MIR 62 250 -12 466 290 109 31 chr1 55703481 55703674 -226489990 + MIR SINE MIR 7 214 -48 1805 129 66 11 chr1 55704113 55704399 -226489265 - AluSq SINE Alu -8 305 4 1688 140 8 4 chr1 55704666 55704930 -226488734 - AluSq SINE Alu -48 265 1 234 91 0 0 chr1 55705057 55705090 -226488574 + (CA)n Simple_repeat Simple_repeat 2 34 0 789 284 89 25 chr1 55705110 55705437 -226488227 + L2 LINE L2 2175 2522 -792 403 65 0 0 chr1 55705716 55705778 -226487886 + Alu SINE Alu 245 306 -6 339 292 4 91 chr1 55706184 55706427 -226487237 - L2 LINE L2 -919 2395 2174 635 314 72 62 chr1 55707071 55707444 -226486220 - L2 LINE L2 0 3272 2896 263 347 35 24 chr1 55707552 55707722 -226485942 + MIR SINE MIR 1 172 -90 * 497 247 126 40 chr1 55707711 55707783 -226485881 - MIR SINE MIR -13 249 185 2120 120 3 0 chr1 55707783 55708082 -226485582 - AluSx SINE Alu -12 300 1 497 247 126 40 chr1 55708082 55708232 -226485432 - MIR SINE MIR -77 185 8 190 229 0 21 chr1 55708255 55708303 -226485361 + MIR SINE MIR 189 235 -27 294 321 12 92 chr1 55708532 55708772 -226484892 + MIR SINE MIR 24 244 -18 34 0 0 0 chr1 55708787 55708821 -226484843 + AT_rich Low_complexity Low_complexity 1 34 0 222 183 17 17 chr1 55708840 55708900 -226484764 + (TAA)n Simple_repeat Simple_repeat 2 61 0 331 283 117 23 chr1 55709083 55709282 -226484382 + MIR SINE MIR 5 219 -43 285 227 148 11 chr1 55709505 55709593 -226484071 + L2 LINE L2 3214 3313 0 210 37 0 0 chr1 55710411 55710438 -226483226 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2086 208 34 2 chr1 55710466 55710879 -226482785 + MSTB LTR MaLR 1 426 0 3139 174 24 11 chr1 55711057 55711690 -226481974 - L1MB5 LINE L1 -8 6166 5526 378 292 39 8 chr1 55711717 55711847 -226481817 - MIR SINE MIR -44 218 85 191 217 38 123 chr1 55712047 55712097 -226481567 - MIR SINE MIR -98 164 126 1883 141 3 32 chr1 55712097 55712409 -226481255 + AluSx SINE Alu 1 303 -9 191 217 38 123 chr1 55712409 55712464 -226481200 - MIR SINE MIR -136 126 68 1250 279 155 7 chr1 55712651 55713089 -226480575 + L1MEc LINE L1 39 541 -5855 528 238 143 87 chr1 55713136 55713367 -226480297 + MLT2D LTR ERVL 97 340 -74 230 60 24 83 chr1 55713391 55713475 -226480189 + (TTATA)n Simple_repeat Simple_repeat 5 83 0 2187 196 12 16 chr1 55713518 55713951 -226479713 - MLT2C2 LTR ERVL -35 485 1 351 283 92 17 chr1 55713951 55714071 -226479593 + MIR SINE MIR 90 218 -44 779 237 58 82 chr1 55714171 55714499 -226479165 + MLT2C2 LTR ERVL 94 413 -51 467 108 11 0 chr1 55714499 55714592 -226479072 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 779 237 58 82 chr1 55714592 55714643 -226479021 + MLT2C2 LTR ERVL 413 464 0 312 288 152 0 chr1 55714645 55714770 -226478894 + L2 LINE L2 3169 3312 -1 252 339 97 0 chr1 55714864 55714988 -226478676 - L3 LINE CR1 -337 1240 1105 459 0 0 0 chr1 55715122 55715173 -226478491 + (TG)n Simple_repeat Simple_repeat 2 52 0 259 354 20 129 chr1 55715763 55715887 -226477777 + L2 LINE L2 2916 3052 -220 1111 111 0 11 chr1 55715887 55716068 -226477596 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1895 167 0 0 chr1 55716070 55716363 -226477301 - AluJb SINE Alu -19 293 1 259 354 20 129 chr1 55716363 55716630 -226477034 + L2 LINE L2 3053 3267 -5 400 316 7 22 chr1 55716923 55717059 -226476605 - MIR SINE MIR -101 161 28 25 51 0 0 chr1 55717263 55717302 -226476362 + AT_rich Low_complexity Low_complexity 1 39 0 188 191 21 64 chr1 55717330 55717377 -226476287 - L2 LINE L2 -10 3303 3259 * 277 210 16 0 chr1 55717345 55717407 -226476257 - MIR SINE MIR -16 246 184 350 357 32 58 chr1 55718117 55718425 -226475239 + L2 LINE L2 2670 2969 -345 1040 262 179 35 chr1 55719551 55719982 -226473682 + LTR33 LTR ERVL 21 513 -8 403 333 9 0 chr1 55720144 55720258 -226473406 + L2 LINE L2 3192 3306 -7 594 290 49 22 chr1 55720567 55720791 -226472873 - MIR SINE MIR -13 249 20 1485 244 78 15 chr1 55720845 55721255 -226472409 - LTR40b LTR ERVL 0 462 27 234 289 169 0 chr1 55721416 55721499 -226472165 - MER45 DNA AcHobo -1475 106 10 237 299 28 97 chr1 55721585 55721729 -226471935 + MIR SINE MIR 50 183 -79 1229 280 34 14 chr1 55721845 55722199 -226471465 - LTR16B LTR ERVL -2 462 102 3571 26 0 0 chr1 55722791 55723215 -226470449 - L1PA3 LINE L1 -2102 4044 3621 11064 33 0 0 chr1 55723215 55725311 -226468353 + L1PA3 LINE L1 4050 6152 -3 2334 190 10 27 chr1 55725636 55726158 -226467506 + L1MB2 LINE L1 3813 4325 -1821 608 235 17 0 chr1 55726168 55726283 -226467381 + FLAM_A SINE Alu 6 122 -20 3749 215 71 44 chr1 55726284 55727108 -226466556 + L1MB2 LINE L1 4322 5123 -1182 2060 124 3 3 chr1 55727108 55727399 -226466265 - AluSc SINE Alu -18 291 1 3749 215 71 44 chr1 55727399 55727616 -226466048 + L1MB2 LINE L1 5123 5333 -972 2092 114 0 4 chr1 55727616 55727932 -226465732 + AluSg SINE Alu 1 315 0 3749 215 71 44 chr1 55727932 55728283 -226465381 + L1MB2 LINE L1 5333 5765 -540 1539 191 35 18 chr1 55728288 55728628 -226465036 + L1MB2 LINE L1 5822 6167 -4 303 303 78 99 chr1 55729254 55729570 -226464094 + L1ME4a LINE L1 5452 5750 -371 261 0 0 0 chr1 55729570 55729599 -226464065 + (TG)n Simple_repeat Simple_repeat 2 30 0 303 303 78 99 chr1 55729599 55729895 -226463769 + L1ME4a LINE L1 5750 6051 -70 540 222 99 35 chr1 55730153 55730324 -226463340 + MIR SINE MIR 79 260 -2 567 279 14 7 chr1 55730394 55730534 -226463130 + MIR3 SINE MIR 54 194 -14 530 297 165 5 chr1 55731172 55731392 -226462272 + MIR SINE MIR 3 251 -11 847 218 76 14 chr1 55731507 55731718 -226461946 - MER58A DNA MER1_type 0 224 1 428 242 102 25 chr1 55731723 55731880 -226461784 - MIR SINE MIR -40 222 54 253 276 69 60 chr1 55732089 55732205 -226461459 + L3 LINE CR1 1429 1545 -32 268 335 84 39 chr1 55732504 55732683 -226460981 - MIR3 SINE MIR -10 198 12 380 246 136 38 chr1 55732689 55732843 -226460821 - MIR SINE MIR -61 147 31 197 246 101 43 chr1 55733561 55733630 -226460034 - MIR3 SINE MIR -19 189 117 401 281 113 23 chr1 55733801 55734008 -226459656 - MIR SINE MIR -26 236 4 587 345 92 47 chr1 55734364 55734855 -226458809 - L2 LINE L2 -337 2977 2453 2502 60 0 0 chr1 55734855 55735153 -226458511 - AluY SINE Alu -1 310 13 587 345 92 47 chr1 55735153 55735259 -226458405 - L2 LINE L2 -861 2453 2353 727 186 34 88 chr1 55735399 55735603 -226458061 - MER3 DNA MER1_type -5 204 12 253 292 0 62 chr1 55735675 55735771 -226457893 + MLT2E LTR ERVL 15 104 -524 375 191 16 0 chr1 55735878 55735941 -226457723 - Charlie5 DNA MER1_type -2531 81 18 333 0 0 0 chr1 55736003 55736040 -226457624 + (CA)n Simple_repeat Simple_repeat 2 38 0 315 324 56 7 chr1 55736043 55736185 -226457479 + HAL1b LINE L1 1193 1341 -7 638 299 35 0 chr1 55736274 55736471 -226457193 + MIR SINE MIR 52 255 -7 336 283 10 0 chr1 55736490 55736589 -226457075 + (TAA)n Simple_repeat Simple_repeat 3 102 0 227 222 74 0 chr1 55737174 55737228 -226456436 - L2 LINE L2 -2 3270 3213 24 0 0 0 chr1 55738631 55738655 -226455009 + AT_rich Low_complexity Low_complexity 1 24 0 206 196 87 0 chr1 55738660 55738706 -226454958 + L2 LINE L2 3263 3312 -1 322 132 15 15 chr1 55738838 55738906 -226454758 + (TG)n Simple_repeat Simple_repeat 2 69 0 392 158 53 13 chr1 55738907 55738983 -226454681 + MER1A DNA MER1_type 209 287 -242 * 461 150 100 0 chr1 55738952 55739032 -226454632 + MER1A DNA MER1_type 426 513 -16 930 113 0 0 chr1 55739038 55739180 -226454484 + (TA)n Simple_repeat Simple_repeat 1 142 0 312 143 0 0 chr1 55739635 55739691 -226453973 + (TG)n Simple_repeat Simple_repeat 1 56 0 222 283 0 0 chr1 55740104 55740157 -226453507 + L2 LINE L2 3259 3311 -2 1817 151 99 3 chr1 55740188 55740492 -226453172 - MER1B DNA MER1_type 0 339 7 342 306 89 17 chr1 55741122 55741302 -226452362 - L2 LINE L2 -3 3310 3118 1343 194 18 38 chr1 55741397 55741616 -226452048 + MLT2B1 LTR ERVL 1 223 -292 465 50 0 0 chr1 55741616 55741676 -226451988 + (TC)n Simple_repeat Simple_repeat 1 60 0 1343 194 18 38 chr1 55741676 55741924 -226451740 + MLT2B1 LTR ERVL 223 515 0 10544 163 41 20 chr1 55742008 55744359 -226449305 - L1MA3 LINE L1 0 7724 5425 1927 153 68 8 chr1 55744359 55744713 -226448951 - THE1C LTR MaLR 0 375 1 10544 163 41 20 chr1 55744713 55745874 -226447790 - L1MA3 LINE L1 -2299 5425 4157 2293 104 3 0 chr1 55745874 55746171 -226447493 - AluSp SINE Alu -15 298 1 10544 163 41 20 chr1 55746171 55746712 -226446952 - L1MA3 LINE L1 -3567 4157 3629 2035 104 13 0 chr1 55746711 55747028 -226446636 - L1MA3 LINE L1 -5242 2323 2003 * 1310 233 30 53 chr1 55747403 55747802 -226445862 + MLT1B LTR MaLR 1 390 0 210 377 55 8 chr1 55748382 55748618 -226445046 + L2 LINE L2 1297 1543 -1771 490 286 29 46 chr1 55748671 55748846 -226444818 + MIR SINE MIR 77 248 -14 240 282 13 0 chr1 55749734 55749812 -226443852 + L1ME LINE L1 5682 5760 -361 2546 64 0 0 chr1 55750087 55750398 -226443266 + AluY SINE Alu 1 311 0 1185 233 116 45 chr1 55750454 55750858 -226442806 + MLT2B1 LTR ERVL 86 518 -2 2086 185 32 27 chr1 55751705 55752255 -226441409 + MLT2A2 LTR ERVL 1 554 0 254 305 144 8 chr1 55752283 55752401 -226441263 - MIR SINE MIR -57 151 18 231 61 0 0 chr1 55752443 55752476 -226441188 + (TC)n Simple_repeat Simple_repeat 1 33 0 272 240 0 0 chr1 55754170 55754220 -226439444 - MIR SINE MIR -12 250 201 2217 199 20 77 chr1 55754245 55754832 -226438832 - MLT2B3 LTR ERVL 0 554 1 253 369 91 47 chr1 55754839 55755159 -226438505 - L2 LINE L2 -343 2971 2638 187 222 22 0 chr1 55755339 55755384 -226438280 - L2 LINE L2 0 3313 3268 1604 193 11 54 chr1 55755438 55755811 -226437853 - MLT1A1 LTR MaLR -2 363 7 180 286 0 0 chr1 55755930 55755972 -226437692 + L3 LINE CR1 1028 1069 -508 309 246 48 138 chr1 55756547 55756714 -226436950 - L2 LINE L2 -3 3310 3159 475 317 16 33 chr1 55757074 55757257 -226436407 + MIR SINE MIR 1 180 -82 186 266 0 0 chr1 55757432 55757511 -226436153 + (TA)n Simple_repeat Simple_repeat 1 79 0 655 265 161 14 chr1 55757993 55758204 -226435460 + MIR SINE MIR 21 262 0 726 243 0 7 chr1 55758281 55758421 -226435243 - MIR3 SINE MIR -50 158 20 205 306 108 36 chr1 55758501 55758612 -226435052 + L2 LINE L2 3107 3225 -47 205 348 45 34 chr1 55758751 55758840 -226434824 + MIR3 SINE MIR 15 104 -104 * 257 424 11 15 chr1 55758817 55759079 -226434585 - L2 LINE L2 -424 2890 2630 388 301 142 22 chr1 55759689 55759872 -226433792 + MIR SINE MIR 48 252 -10 * 720 253 43 78 chr1 55759858 55760115 -226433549 + MIR SINE MIR 5 252 -10 184 375 10 0 chr1 55761566 55761670 -226431994 - MIR SINE MIR -6 256 152 * 352 304 0 29 chr1 55761649 55761751 -226431913 - L2 LINE L2 -34 3279 3181 699 331 37 49 chr1 55761943 55762372 -226431292 - L2 LINE L2 -346 2968 2545 518 295 154 0 chr1 55763208 55763364 -226430300 + MER5A DNA MER1_type 10 189 0 195 358 42 47 chr1 55763522 55763715 -226429949 + MIR SINE MIR 20 211 -51 2327 77 0 3 chr1 55763722 55764020 -226429644 + AluY SINE Alu 1 297 -14 356 316 23 30 chr1 55764096 55764229 -226429435 - L2 LINE L2 0 3272 3141 350 265 0 0 chr1 55764927 55765010 -226428654 - MIR SINE MIR 0 262 180 326 333 39 20 chr1 55765929 55766082 -226427582 + L2 LINE L2 2905 3060 -212 497 280 150 5 chr1 55766196 55766521 -226427143 + MLT1J2 LTR MaLR 20 450 0 427 274 48 0 chr1 55766530 55766654 -226427010 + L2 LINE L2 3169 3298 -15 2091 122 7 7 chr1 55766831 55767135 -226426529 + AluSx SINE Alu 1 304 -8 411 258 10 10 chr1 55768285 55768382 -226425282 + MER69 DNA AcHobo 3 99 -2427 * 2017 187 70 39 chr1 55768380 55768951 -226424713 + MER69 DNA AcHobo 1938 2526 0 225 227 74 0 chr1 55769233 55769312 -226424352 + MIR SINE MIR 80 165 -43 661 220 31 49 chr1 55769398 55769621 -226424043 + L1MC5 LINE L1 7681 7899 -62 24 0 0 0 chr1 55769799 55769823 -226423841 + AT_rich Low_complexity Low_complexity 1 24 0 617 285 66 22 chr1 55769904 55770135 -226423529 - MIR SINE MIR -3 259 18 4831 64 195 0 chr1 55770755 55771446 -226422218 - LTR12 LTR ERV1 0 826 1 329 235 37 12 chr1 55772454 55772535 -226421129 - MER58B DNA MER1_type -10 331 249 520 328 70 76 chr1 55772856 55773154 -226420510 + L2 LINE L2 2579 2877 -395 1963 133 13 26 chr1 55773154 55773456 -226420208 - AluJb SINE Alu -14 298 1 520 328 70 76 chr1 55773456 55773832 -226419832 + L2 LINE L2 2877 3272 0 2471 245 24 10 chr1 55773940 55774537 -226419127 - L1ME3A LINE L1 -13 6157 5553 316 241 72 104 chr1 55775084 55775149 -226418515 - L1ME4a LINE L1 -38 6083 6017 4385 76 71 28 chr1 55775149 55775782 -226417882 + PABL_A LTR ERV1 1 660 0 316 241 72 104 chr1 55775782 55775965 -226417699 - L1ME4a LINE L1 -104 6017 5843 4184 172 67 15 chr1 55776012 55776831 -226416833 + MER21B LTR ERV1 1 862 -1 440 315 81 20 chr1 55776983 55777180 -226416484 + MIR SINE MIR 48 256 -6 627 39 0 0 chr1 55777960 55778038 -226415626 + (TGG)n Simple_repeat Simple_repeat 3 80 0 336 298 186 37 chr1 55778238 55778587 -226415077 + L2 LINE L2 2913 3313 0 381 275 101 34 chr1 55778614 55778763 -226414901 + L2 LINE L2 3155 3313 0 442 290 21 28 chr1 55779092 55779237 -226414427 - MIR SINE MIR -111 151 8 420 319 142 32 chr1 55779602 55779941 -226413723 + HAL1 LINE L1 1415 1790 -717 331 266 83 28 chr1 55780574 55780683 -226412981 - MIR SINE MIR -98 164 50 205 291 128 35 chr1 55781216 55781357 -226412307 - MIR SINE MIR -25 237 84 274 233 107 29 chr1 55781357 55781460 -226412204 - MIR SINE MIR -71 191 81 882 208 3 3 chr1 55782085 55782395 -226411269 - MSTD LTR MaLR -7 389 1 272 325 89 35 chr1 55782423 55782592 -226411072 - L2 LINE L2 -223 3049 2872 2972 100 27 18 chr1 55782808 55783248 -226410416 + MLT2A1 LTR ERVL 1 444 0 11659 67 2 13 chr1 55783248 55783373 -226410291 + HERVL-A1 LTR ERVL 1 126 -5528 2372 87 3 0 chr1 55783373 55783671 -226409993 - AluY SINE Alu -12 299 1 11659 67 2 13 chr1 55783671 55785055 -226408609 + HERVL-A1 LTR ERVL 126 1493 -4161 2657 67 0 0 chr1 55785051 55785380 -226408284 + HERVL LTR ERVL 3990 4318 -1336 * 219 36 0 0 chr1 55785479 55785507 -226408157 + (GA)n Simple_repeat Simple_repeat 1 28 0 182 262 0 0 chr1 55785633 55785675 -226407989 - L2 LINE L2 -339 2975 2934 3975 167 19 23 chr1 55785726 55787022 -226406642 - L1MA4A LINE L1 -312 6693 5400 * 8036 233 49 56 chr1 55787015 55789144 -226404520 - L1MA4A LINE L1 -2945 3903 1815 2062 152 3 0 chr1 55789144 55789454 -226404210 - AluSx SINE Alu -1 311 1 8036 233 49 56 chr1 55789454 55791247 -226402417 - L1MA4A LINE L1 -5033 1815 10 236 154 0 0 chr1 55791337 55791376 -226402288 + MLT1A2 LTR MaLR 332 370 -4 698 290 112 58 chr1 55791464 55792019 -226401645 - MLT1K LTR MaLR 0 588 4 454 297 20 27 chr1 55792430 55792578 -226401086 - MIR SINE MIR -111 151 5 349 376 5 11 chr1 55793554 55793743 -226399921 - L2 LINE L2 -1062 2252 2065 1856 203 81 96 chr1 55794163 55794827 -226398837 - MLT1E1 LTR MaLR 0 654 1 342 400 36 0 chr1 55794991 55795131 -226398533 + L2 LINE L2 3127 3271 -1 190 380 12 12 chr1 55795308 55795471 -226398193 + L2 LINE L2 1527 1689 -1625 488 321 55 25 chr1 55795563 55795800 -226397864 + L2 LINE L2 2628 2871 -443 202 296 0 25 chr1 55796121 55796202 -226397462 - L2 LINE L2 -1 3271 3193 237 261 31 0 chr1 55796336 55796401 -226397263 + L2 LINE L2 3201 3267 -5 204 333 83 39 chr1 55797041 55797197 -226396467 - MIR3 SINE MIR -12 196 34 454 326 95 37 chr1 55797598 55797840 -226395824 + L3 LINE CR1 1321 1576 -1 397 274 180 29 chr1 55798224 55798434 -226395230 - MIR SINE MIR -1 261 8 200 119 0 24 chr1 55798451 55798493 -226395171 + (TATG)n Simple_repeat Simple_repeat 4 44 0 291 307 16 16 chr1 55798520 55798656 -226395008 + MIR SINE MIR 22 154 -58 682 303 171 48 chr1 55798783 55799199 -226394465 + L2 LINE L2 2508 2974 -340 223 246 105 0 chr1 55799281 55799338 -226394326 + L2 LINE L2 3207 3269 -44 21 0 0 0 chr1 55799864 55799885 -226393779 + AT_rich Low_complexity Low_complexity 1 21 0 11840 188 43 30 chr1 55799885 55804796 -226388868 - L1PB1 LINE L1 -1 6866 1886 4178 72 44 2 chr1 55804797 55805363 -226388301 - L1PA7 LINE L1 0 6154 5565 516 287 0 0 chr1 55805363 55805485 -226388179 + MIR3 SINE MIR 77 198 -10 212 322 172 0 chr1 55805488 55805575 -226388089 + L2 LINE L2 3160 3261 -11 342 227 182 0 chr1 55806245 55806333 -226387331 - MIR3 SINE MIR -42 166 63 414 263 201 5 chr1 55806359 55806568 -226387096 - MIR SINE MIR -6 256 7 412 211 55 0 chr1 55806592 55806701 -226386963 - MER94 DNA DNA -10 124 10 281 280 108 0 chr1 55807219 55807312 -226386352 + L2 LINE L2 3201 3303 -10 210 320 6 114 chr1 55807362 55807537 -226386127 - L2 LINE L2 -114 3158 3003 267 217 133 0 chr1 55807588 55807648 -226386016 - MIR SINE MIR -112 150 83 492 48 0 0 chr1 55808510 55808573 -226385091 + (CA)n Simple_repeat Simple_repeat 2 64 0 294 305 85 37 chr1 55808593 55808757 -226384907 + MIR SINE MIR 25 196 -66 198 196 39 39 chr1 55808836 55808887 -226384777 + L2 LINE L2 3221 3271 -1 341 181 83 0 chr1 55810730 55810802 -226382862 + MIR SINE MIR 90 167 -95 264 293 57 28 chr1 55810954 55811060 -226382604 + MIR3 SINE MIR 83 191 -17 402 163 7 70 chr1 55811378 55811518 -226382146 - MER8 DNA MER2_type 0 239 25 235 333 78 10 chr1 55811581 55811683 -226381981 + MIR SINE MIR 30 138 -70 755 153 14 7 chr1 55811683 55811827 -226381837 + Ricksha_a DNA DNA 10 154 -1027 4807 138 43 3 chr1 55811834 55812693 -226380971 + Ricksha_a DNA DNA 277 1169 -7 561 307 35 46 chr1 55813173 55813422 -226380242 + MIR SINE MIR 4 251 -11 2769 162 6 4 chr1 55813822 55814298 -226379366 + MER66B LTR ERV1 6 482 -4 180 0 0 0 chr1 55814656 55814676 -226378988 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 2061 234 42 107 chr1 55814698 55815894 -226377770 + L1MDa LINE L1 13 1284 -5256 621 215 1 1 chr1 55815891 55816031 -226377633 + L1M3 LINE L1 5545 5661 -522 * 180 77 0 0 chr1 55816031 55816057 -226377607 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 621 215 1 1 chr1 55816057 55816075 -226377589 + L1M3 LINE L1 5660 5677 -506 * 5218 163 33 6 chr1 55816067 55817710 -226375954 - L1PA16 LINE L1 -8 7577 5894 39857 42 4 2 chr1 55817813 55823729 -226369935 + L1PA4 LINE L1 221 6148 -7 35 54 0 0 chr1 55823737 55823793 -226369871 + AT_rich Low_complexity Low_complexity 1 56 0 14997 190 35 9 chr1 55823793 55825088 -226368576 - L1PA16 LINE L1 -4276 3289 2028 1687 227 67 60 chr1 55825088 55825638 -226368026 - MLT2B3 LTR ERVL 0 554 1 14997 190 35 9 chr1 55825638 55826404 -226367260 - L1PA16 LINE L1 -5537 2028 1283 2057 135 7 0 chr1 55826404 55826701 -226366963 + AluSc SINE Alu 1 299 -10 14997 190 35 9 chr1 55826701 55827782 -226365882 - L1PA16 LINE L1 -6282 1283 67 6054 205 87 56 chr1 55827782 55828525 -226365139 + pTR5 LTR ERV1 747 1465 -973 6972 40 28 0 chr1 55828525 55829429 -226364235 - L1PA5 LINE L1 -5 6149 5220 6054 205 87 56 chr1 55829429 55830326 -226363338 + pTR5 LTR ERV1 1465 2438 0 218 338 14 14 chr1 55830753 55830827 -226362837 + MIR SINE MIR 20 93 -169 1270 211 36 14 chr1 55830844 55831119 -226362545 - AluJo SINE Alu -31 281 1 28 29 0 0 chr1 55831134 55831169 -226362495 + AT_rich Low_complexity Low_complexity 1 35 0 320 288 0 36 chr1 55831644 55831755 -226361909 - MIR SINE MIR -93 169 63 21 57 0 0 chr1 55831860 55831895 -226361769 + AT_rich Low_complexity Low_complexity 1 35 0 188 300 156 22 chr1 55831969 55832059 -226361605 + L2 LINE L2 3169 3270 -2 13232 183 65 10 chr1 55832144 55836905 -226356759 + L1PB1 LINE L1 6 5186 -1681 2351 101 0 0 chr1 55836905 55837201 -226356463 + AluSg SINE Alu 1 296 -14 13232 183 65 10 chr1 55837201 55838600 -226355064 + L1PB1 LINE L1 5186 6507 -360 389 139 20 20 chr1 55838616 55838717 -226354947 + (TA)n Simple_repeat Simple_repeat 2 102 0 2078 138 11 22 chr1 55838724 55839095 -226354569 + L1PB1 LINE L1 6501 6867 0 339 238 67 29 chr1 55839229 55839334 -226354330 - MIR SINE MIR 0 262 154 182 311 16 16 chr1 55839360 55839421 -226354243 + MIR SINE MIR 37 97 -111 1486 242 107 52 chr1 55839431 55839973 -226353691 - MLT1E LTR MaLR -19 574 3 251 254 16 0 chr1 55840113 55840176 -226353488 + MIR3 SINE MIR 108 171 -37 256 261 244 0 chr1 55840253 55840368 -226353296 + MIR SINE MIR 112 254 -8 277 281 42 0 chr1 55840919 55841015 -226352649 - LTR58 LTR ERV1 -230 449 350 207 213 85 0 chr1 55841629 55841676 -226351988 - MIR SINE MIR -127 81 31 2163 133 3 3 chr1 55842051 55842360 -226351304 - AluSx SINE Alu -1 311 3 1588 97 13 4 chr1 55842413 55842651 -226351013 - pTR5 LTR ERV1 -2031 407 168 336 158 54 76 chr1 55842656 55842748 -226350916 - LTR30 LTR ERV1 -75 624 228 4597 148 97 24 chr1 55842748 55843818 -226349846 - pTR5 LTR ERV1 -437 1798 57 229 268 49 0 chr1 55843835 55843917 -226349747 - MIR SINE MIR -56 206 121 306 300 12 0 chr1 55844394 55844474 -226349190 - L2 LINE L2 -2 3270 3190 304 266 73 16 chr1 55845635 55845759 -226347905 - HAL1b LINE L1 -5 1343 1213 796 258 108 49 chr1 55845760 55846345 -226347319 - L1ME4a LINE L1 -176 5945 5318 790 158 128 0 chr1 55846470 55846650 -226347014 - L1PB4 LINE L1 -34 6120 5909 3431 169 15 30 chr1 55846652 55847036 -226346628 - L1PB4 LINE L1 -286 5870 5482 2298 84 0 10 chr1 55847036 55847335 -226346329 - AluY SINE Alu -15 296 1 3431 169 15 30 chr1 55847335 55847957 -226345707 - L1PB4 LINE L1 -674 5482 4878 1710 103 9 0 chr1 55847957 55848189 -226345475 - AluSx SINE Alu -16 296 63 3431 169 15 30 chr1 55848189 55848502 -226345162 - L1PB4 LINE L1 -1278 4878 4562 195 162 0 0 chr1 55848584 55848621 -226345043 + (CA)n Simple_repeat Simple_repeat 2 38 0 2416 64 0 0 chr1 55848991 55849287 -226344377 + AluY SINE Alu 5 300 -11 247 141 26 26 chr1 55849581 55849659 -226344005 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 640 188 8 0 chr1 55849899 55850016 -226343648 - L1M1 LINE L1 -6815 750 633 314 325 81 0 chr1 55850758 55850918 -226342746 + MIR SINE MIR 84 256 -6 218 279 16 0 chr1 55851402 55851463 -226342201 - MIR3 SINE MIR -1 207 146 210 290 43 43 chr1 55852147 55852216 -226341448 + MIR SINE MIR 26 94 -168 187 286 0 54 chr1 55852251 55852307 -226341357 + L2 LINE L2 3251 3303 -10 337 318 9 28 chr1 55852703 55852810 -226340854 - L2 LINE L2 -19 3253 3149 518 263 50 88 chr1 55853167 55853429 -226340235 + MIR SINE MIR 2 253 -9 468 273 60 27 chr1 55853593 55853743 -226339921 - MIR3 SINE MIR -5 203 49 739 311 60 8 chr1 55853953 55854188 -226339476 - MIR SINE MIR -13 249 3 350 326 0 0 chr1 55854215 55854313 -226339351 - MER81 DNA DNA 0 114 17 1175 35 0 0 chr1 55854543 55854688 -226338976 + L1PA4 LINE L1 6010 6154 -1 276 53 0 0 chr1 55854697 55854735 -226338929 + (T)n Simple_repeat Simple_repeat 1 38 0 207 261 0 0 chr1 55854808 55854854 -226338810 + (ATG)n Simple_repeat Simple_repeat 3 48 0 287 189 19 0 chr1 55854938 55854991 -226338673 - L2 LINE L2 0 3272 3219 348 308 76 111 chr1 55855025 55855316 -226338348 + L2 LINE L2 2077 2377 -895 1905 145 11 0 chr1 55855316 55855598 -226338066 - AluSx SINE Alu -27 285 1 348 308 76 111 chr1 55855598 55856359 -226337305 + L2 LINE L2 2377 3091 -181 184 303 0 0 chr1 55856460 55856493 -226337171 + L2 LINE L2 3254 3286 -27 197 391 0 0 chr1 55857899 55857968 -226335696 + L2 LINE L2 3203 3271 -1 2440 58 0 22 chr1 55858877 55859189 -226334475 - AluY SINE Alu -4 307 3 863 330 55 15 chr1 55859516 55859913 -226333751 + L2 LINE L2 2901 3313 0 337 300 138 25 chr1 55859903 55860063 -226333601 - MIR SINE MIR -65 197 20 * 730 261 158 0 chr1 55860571 55860793 -226332871 + MIR SINE MIR 6 262 0 268 259 141 12 chr1 55860913 55860998 -226332666 + MIR SINE MIR 160 255 -7 336 48 0 0 chr1 55861007 55861049 -226332615 + (ATG)n Simple_repeat Simple_repeat 1 42 0 253 297 55 22 chr1 55861079 55861170 -226332494 - L2 LINE L2 -23 3249 3156 355 358 0 44 chr1 55861604 55861741 -226331923 - MIR3 SINE MIR -75 133 3 355 284 57 35 chr1 55862387 55862528 -226331136 - L2 LINE L2 -1 3312 3169 438 240 10 0 chr1 55862696 55862792 -226330872 - MIR SINE MIR -108 154 58 2537 203 4 69 chr1 55862892 55862922 -226330742 - L1P LINE L1 -910 5236 5206 1400 105 10 0 chr1 55862922 55863122 -226330542 - L1PA16 LINE L1 -9 6157 5956 2537 203 4 69 chr1 55863122 55863814 -226329850 - L1P LINE L1 -940 5206 4561 2164 122 3 0 chr1 55863893 55864188 -226329476 + AluSx SINE Alu 6 301 -11 272 405 16 0 chr1 55865347 55865473 -226328191 - MIR SINE MIR -62 146 19 242 397 14 19 chr1 55865657 55865866 -226327798 - MIR SINE MIR -50 212 5 436 259 29 29 chr1 55866299 55866438 -226327226 - MIR SINE MIR -47 215 77 427 331 16 0 chr1 55866513 55866640 -226327024 + L2 LINE L2 3184 3312 -1 219 373 99 14 chr1 55866852 55866988 -226326676 + L2 LINE L2 3102 3250 -17 189 107 0 0 chr1 55866988 55867016 -226326648 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 291 237 220 25 chr1 55867340 55867458 -226326206 + MIR SINE MIR 116 256 -6 414 314 72 81 chr1 55868302 55868842 -226324822 + L2 LINE L2 2685 3225 -47 302 258 0 0 chr1 55868842 55868908 -226324756 - MER91 DNA MER1_type 0 190 131 8078 34 0 0 chr1 55868948 55870682 -226322982 - L1PA4 LINE L1 0 6155 4421 3156 45 1 1 chr1 55870682 55871089 -226322575 + L1P LINE L1 4056 4461 -1685 199 278 0 0 chr1 55871121 55871175 -226322489 + L2 LINE L2 3213 3266 -6 1681 151 68 0 chr1 55871409 55871720 -226321944 + L1PA16 LINE L1 5827 6158 -8 293 281 13 134 chr1 55871840 55872064 -226321600 + MIR SINE MIR 20 216 -46 261 235 47 35 chr1 55872144 55872229 -226321435 + MIR SINE MIR 69 154 -108 1772 195 86 6 chr1 55872237 55872596 -226321068 - MSTA LTR MaLR 0 428 41 280 326 87 23 chr1 55872609 55872781 -226320883 - MIR SINE MIR -73 189 7 231 301 23 60 chr1 55872926 55873059 -226320605 - MIR SINE MIR -9 253 126 232 319 69 14 chr1 55873196 55873268 -226320396 - MIR SINE MIR -95 113 38 4868 26 0 0 chr1 55873384 55873951 -226319713 - L1PA2 LINE L1 -4 6151 5585 5940 16 0 0 chr1 55873951 55874840 -226318824 + L1PA2 LINE L1 4690 5578 -577 817 309 24 8 chr1 55875093 55875339 -226318325 - MIR SINE MIR -8 254 5 231 361 69 15 chr1 55875350 55875480 -226318184 + L2 LINE L2 2718 2854 -460 268 309 172 20 chr1 55875482 55875686 -226317978 + MIR SINE MIR 12 246 -16 252 328 44 22 chr1 55875700 55875880 -226317784 + L2 LINE L2 2881 3064 -208 496 257 109 33 chr1 55876186 55876369 -226317295 - MIR SINE MIR -28 234 38 188 308 0 0 chr1 55876759 55876811 -226316853 + L3 LINE CR1 1516 1567 -10 418 235 129 30 chr1 55876886 55877018 -226316646 + L2 LINE L2 3164 3308 -5 297 236 64 36 chr1 55877474 55877584 -226316080 + L1ME LINE L1 5447 5559 -605 427 262 80 119 chr1 55877595 55878088 -226315576 - MLT1E LTR MaLR -65 490 20 1268 196 37 82 chr1 55878100 55878287 -226315377 + MER58D DNA MER1_type 1 162 -2258 2458 127 6 3 chr1 55878287 55878650 -226315014 - THE1B LTR MaLR 0 364 1 1268 196 37 82 chr1 55878650 55878865 -226314799 + MER58D DNA MER1_type 162 385 -1 190 152 65 0 chr1 55878914 55878960 -226314704 - MIR SINE MIR -96 166 118 3485 226 54 25 chr1 55878963 55880556 -226313108 + L1PB4 LINE L1 2314 3963 -3602 1865 157 19 29 chr1 55880634 55881011 -226312653 - THE1C LTR MaLR -2 373 1 9640 130 32 36 chr1 55881011 55882592 -226311072 - THE1C-int LTR MaLR 0 1580 6 1112 143 24 15 chr1 55882596 55882808 -226310856 - MLT2A2 LTR ERVL 0 453 293 451 117 65 0 chr1 55882807 55882884 -226310780 - MLT2A2 LTR ERVL -371 82 1 * 2623 196 77 5 chr1 55882895 55883549 -226310115 + L1PB4 LINE L1 4072 4772 -2793 746 101 0 234 chr1 55883558 55883785 -226309879 + L1PBa LINE L1 1 174 -6689 * 4435 196 17 27 chr1 55883779 55885627 -226308037 + L1PB4 LINE L1 5736 7575 0 3872 126 50 5 chr1 55885693 55886353 -226307311 - L1MA1 LINE L1 0 6302 5613 4927 165 28 31 chr1 55886353 55886691 -226306973 - L1P LINE L1 -1300 4846 4508 324 0 0 0 chr1 55886691 55886727 -226306937 + (TG)n Simple_repeat Simple_repeat 1 36 0 4927 165 28 31 chr1 55886727 55887500 -226306164 - L1P LINE L1 -1638 4508 3622 984 78 59 13 chr1 55887500 55887642 -226306022 + L1PA10 LINE L1 6005 6164 -4 35 71 0 0 chr1 55887646 55887716 -226305948 + AT_rich Low_complexity Low_complexity 1 70 0 17117 55 4 2 chr1 55887767 55889913 -226303751 + L1P LINE L1 3 2151 -3995 281 29 0 0 chr1 55890017 55890051 -226303613 + L1MA9 LINE L1 5888 5921 -391 * 6356 148 41 14 chr1 55890045 55891924 -226301740 + L1MA8 LINE L1 4092 6031 -260 198 0 0 0 chr1 55891924 55891946 -226301718 + (GGGTG)n Simple_repeat Simple_repeat 4 25 0 6356 148 41 14 chr1 55891946 55892213 -226301451 + L1MA8 LINE L1 6031 6289 -2 265 262 30 3 chr1 55892524 55892604 -226301060 - MIR SINE MIR -65 143 64 201 213 0 21 chr1 55892798 55892845 -226300819 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1354 134 51 0 chr1 55892991 55893208 -226300456 + MER30 DNA MER1_type 1 228 -2 21 0 0 0 chr1 55893443 55893464 -226300200 + AT_rich Low_complexity Low_complexity 1 21 0 5751 22 6 0 chr1 55893514 55894187 -226299477 + L1PA3 LINE L1 5477 6153 -2 23 0 0 0 chr1 55894647 55894670 -226298994 + AT_rich Low_complexity Low_complexity 1 23 0 278 345 32 41 chr1 55894762 55895018 -226298646 + L2 LINE L2 2795 3046 -226 238 289 31 10 chr1 55895039 55895136 -226298528 + MIR SINE MIR 150 248 -14 266 298 107 0 chr1 55895184 55895268 -226298396 + MIR SINE MIR 149 241 -21 2738 97 11 0 chr1 55895268 55895639 -226298025 + THE1C LTR MaLR 1 375 0 3888 163 36 12 chr1 55895968 55896655 -226297009 + MER44D DNA MER2_type 1 704 -1 180 333 0 35 chr1 55896668 55896725 -226296939 + MIR SINE MIR 20 74 -134 182 239 87 0 chr1 55897359 55897405 -226296259 - L2 LINE L2 -2 3270 3221 307 364 17 0 chr1 55897468 55897586 -226296078 - MIR SINE MIR -93 169 50 650 290 61 49 chr1 55897915 55898525 -226295139 + L1M4 LINE L1 3632 4248 -1898 * 6425 143 21 4 chr1 55898524 55900064 -226293600 + L1MA3 LINE L1 4735 6305 0 343 333 43 21 chr1 55900588 55900729 -226292935 + MIR SINE MIR 15 158 -104 1863 129 21 66 chr1 55900729 55901108 -226292556 - THE1C LTR MaLR 0 375 14 396 311 0 0 chr1 55901125 55901228 -226292436 + MIR SINE MIR 157 259 -3 2363 125 17 81 chr1 55902423 55902844 -226290820 - L1MA2 LINE L1 -84 6220 5832 5409 22 0 0 chr1 55902844 55903467 -226290197 - L1PA4 LINE L1 0 6155 5533 2363 125 17 81 chr1 55903467 55903526 -226290138 - L1MA2 LINE L1 -472 5832 5771 6402 146 17 6 chr1 55903563 55904950 -226288714 - L1MA2 LINE L1 0 7723 6324 1844 166 39 17 chr1 55904947 55905208 -226288456 - L1MA2 LINE L1 -1464 6101 5826 * 14433 171 4 20 chr1 55905208 55908458 -226285206 + L1PA12 LINE L1 2506 5766 -402 2544 51 0 19 chr1 55908458 55908774 -226284890 + AluY SINE Alu 1 310 -1 14433 171 4 20 chr1 55908774 55909171 -226284493 + L1PA12 LINE L1 5766 6168 0 1844 166 39 17 chr1 55909171 55909318 -226284346 - L1MA2 LINE L1 -1739 5826 5684 1032 145 39 0 chr1 55909317 55909524 -226284140 - L1MA2 LINE L1 -3999 3566 3352 * 10059 163 26 21 chr1 55909627 55911448 -226282216 - L1MA2 LINE L1 -4552 3013 1185 7435 230 27 9 chr1 55911459 55913370 -226280294 + L1 LINE L1 2272 4216 -1930 875 152 106 0 chr1 55913363 55913514 -226280150 + L1M1 LINE L1 1893 2059 -5506 * 463 201 19 63 chr1 55913516 55913675 -226279989 + L1P LINE L1 4223 4374 -1772 6477 237 26 8 chr1 55913855 55915706 -226277958 - L1 LINE L1 -1122 5726 3842 968 123 19 0 chr1 55915707 55915869 -226277795 - L1P LINE L1 -2709 3437 3273 2832 104 32 9 chr1 55915873 55916265 -226277399 + MLT2A1 LTR ERVL 1 405 -39 519 31 0 0 chr1 55916265 55916330 -226277334 + (TG)n Simple_repeat Simple_repeat 2 66 0 2832 104 32 9 chr1 55916330 55916371 -226277293 + MLT2A1 LTR ERVL 405 444 0 43693 74 11 1 chr1 55916371 55921970 -226271694 + HERVL-A1 LTR ERVL 1 5654 0 2669 112 26 55 chr1 55921970 55922427 -226271237 + MLT2A1 LTR ERVL 1 444 0 7412 249 45 17 chr1 55922443 55922643 -226271021 - L1 LINE L1 -3268 3580 3387 2277 98 0 0 chr1 55922643 55922938 -226270726 - AluY SINE Alu -16 295 1 7412 249 45 17 chr1 55922938 55925510 -226268154 - L1 LINE L1 -3461 3387 727 1401 268 129 50 chr1 55926113 55926847 -226266817 + MER21B LTR ERV1 15 806 -57 205 255 39 0 chr1 55927457 55927508 -226266156 - L3 LINE CR1 -17 1560 1508 620 218 58 46 chr1 55927735 55927909 -226265755 - MER69A DNA AcHobo 0 177 2 418 290 9 0 chr1 55927965 55928072 -226265592 - MIR SINE MIR -94 168 61 1791 244 41 80 chr1 55928289 55928904 -226264760 + MLT1E LTR MaLR 3 593 0 383 237 31 0 chr1 55928904 55929001 -226264663 + MLT1E-int LTR MaLR 1 100 -1271 289 331 41 41 chr1 55929215 55929360 -226264304 - MIR SINE MIR -7 255 111 284 333 57 0 chr1 55929594 55929717 -226263947 - MIR SINE MIR -56 206 77 205 171 0 0 chr1 55929787 55929828 -226263836 + (TGAA)n Simple_repeat Simple_repeat 2 42 0 1779 134 0 8 chr1 55930154 55930485 -226263179 + AluSq SINE Alu 54 382 0 184 286 0 20 chr1 55930600 55930649 -226263015 + L2 LINE L2 3187 3234 -38 180 0 0 0 chr1 55930986 55931006 -226262658 + (TTA)n Simple_repeat Simple_repeat 2 21 0 417 337 0 0 chr1 55931477 55931575 -226262089 + L2 LINE L2 3158 3255 -17 292 289 58 39 chr1 55931820 55931924 -226261740 - L2 LINE L2 -8 3264 3159 216 264 0 19 chr1 55931982 55932035 -226261629 - MIR SINE MIR -138 124 73 23 54 0 0 chr1 55932749 55932786 -226260878 + AT_rich Low_complexity Low_complexity 1 37 0 451 272 41 0 chr1 55933225 55933372 -226260292 + L1ME LINE L1 5602 5754 -367 26 30 0 0 chr1 55933385 55933418 -226260246 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr1 55933766 55933794 -226259870 + AT_rich Low_complexity Low_complexity 1 28 0 1192 243 90 31 chr1 55933975 55934622 -226259042 + L1M4 LINE L1 2804 3488 -2658 4188 156 9 21 chr1 55934629 55935428 -226258236 + L1P4 LINE L1 4542 5332 -833 2004 134 10 0 chr1 55935428 55935720 -226257944 + AluSx SINE Alu 1 295 -17 4188 156 9 21 chr1 55935720 55936060 -226257604 + L1P4 LINE L1 5332 5675 -490 695 256 19 117 chr1 55936087 55936266 -226257398 + L1MC4a LINE L1 5558 5753 -2055 2310 66 11 7 chr1 55936266 55936553 -226257111 + AluY SINE Alu 1 288 -23 695 256 19 117 chr1 55936553 55936719 -226256945 + L1MC4a LINE L1 5753 5934 -1874 661 258 60 24 chr1 55936719 55936971 -226256693 + MIR SINE MIR 2 262 0 695 256 19 117 chr1 55936971 55937112 -226256552 + L1MC4a LINE L1 5934 5993 -1815 1224 228 8 0 chr1 55937112 55937349 -226256315 + MER8 DNA MER2_type 1 239 0 695 256 19 117 chr1 55937349 55937383 -226256281 + L1MC4a LINE L1 5993 6029 -1779 5611 63 1 14 chr1 55937491 55938233 -226255431 - L1PA8 LINE L1 -8 6164 5432 2254 92 7 3 chr1 55938233 55938528 -226255136 - AluY SINE Alu -15 296 1 24 0 0 0 chr1 55938542 55938566 -226255098 + AT_rich Low_complexity Low_complexity 1 24 0 1812 152 0 14 chr1 55939313 55939610 -226254054 - AluSx SINE Alu -19 293 1 318 302 35 0 chr1 55939896 55940012 -226253652 + MER103 DNA DNA 4 123 -43 369 363 144 17 chr1 55940330 55940741 -226252923 - L2 LINE L2 -12 3301 2839 3368 85 15 2 chr1 55940860 55941331 -226252333 - L1P LINE L1 -1695 4451 3975 * 4669 51 0 12 chr1 55941322 55941915 -226251749 - L1P LINE L1 -4964 1182 597 * 17093 110 5 14 chr1 55941913 55944594 -226249070 - L1P LINE L1 -2167 3979 1325 6525 54 35 2 chr1 55944594 55946007 -226247657 + L1PA7 LINE L1 4743 6184 0 617 332 24 20 chr1 55946029 55946276 -226247388 - MIR SINE MIR -3 259 12 1276 72 0 0 chr1 55946514 55946724 -226246940 + AluY SINE Alu 132 341 0 4022 173 58 0 chr1 55946806 55947069 -226246595 - L1PB4 LINE L1 -98 6058 5812 468 0 0 0 chr1 55947069 55947121 -226246543 + (CA)n Simple_repeat Simple_repeat 2 53 0 4022 173 58 0 chr1 55947121 55947765 -226245899 - L1PB4 LINE L1 -344 5812 5100 502 289 84 32 chr1 55948100 55948290 -226245374 - MIR SINE MIR 0 262 63 521 278 45 45 chr1 55949755 55949931 -226243733 - MIR SINE MIR -55 207 32 180 318 154 27 chr1 55950598 55950708 -226242956 + L2 LINE L2 2933 3056 -216 293 280 110 40 chr1 55951138 55951238 -226242426 - L2 LINE L2 -18 3254 3148 24 32 0 0 chr1 55951386 55951417 -226242247 + AT_rich Low_complexity Low_complexity 1 31 0 430 266 62 90 chr1 55951949 55952211 -226241453 - MIR SINE MIR 0 262 9 1216 157 65 0 chr1 55952738 55952955 -226240709 - L1PA15 LINE L1 -6 6159 5929 21 36 0 0 chr1 55953041 55953069 -226240595 + AT_rich Low_complexity Low_complexity 1 28 0 429 321 84 11 chr1 55953341 55953531 -226240133 - MIR SINE MIR -33 229 26 212 246 18 18 chr1 55953531 55953588 -226240076 - L2 LINE L2 -230 3042 2986 1655 219 28 3 chr1 55953618 55953974 -226239690 + MLT1A1 LTR MaLR 1 365 0 690 230 19 19 chr1 55954007 55954168 -226239496 - LTR33 LTR ERVL -2 519 359 896 276 15 0 chr1 55954277 55954473 -226239191 - LTR33 LTR ERVL -322 199 1 2464 66 3 7 chr1 55954511 55954816 -226238848 - AluY SINE Alu -7 304 1 5775 109 11 16 chr1 55955630 55956514 -226237150 + L1PA16 LINE L1 5254 6134 -32 3412 148 11 13 chr1 55956514 55957042 -226236622 + MER1A DNA MER1_type 1 527 0 5775 109 11 16 chr1 55957042 55957073 -226236591 + L1PA16 LINE L1 6134 6164 -2 1776 258 61 27 chr1 55957204 55957827 -226235837 - L1ME3A LINE L1 -9 6161 5518 322 330 60 78 chr1 55957827 55958109 -226235555 + L2 LINE L2 2996 3272 0 269 386 0 63 chr1 55958116 55958274 -226235390 - MIR3 SINE MIR -45 163 16 242 306 0 0 chr1 55959251 55959323 -226234341 - MIR SINE MIR -28 234 163 * 3796 263 56 19 chr1 55959302 55960645 -226233019 + L2 LINE L2 1818 3211 -102 237 310 0 0 chr1 55960778 55960836 -226232828 + L2 LINE L2 3211 3268 -4 225 0 0 0 chr1 55960978 55961003 -226232661 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3823 84 4 0 chr1 55961006 55961518 -226232146 - L1PA7 LINE L1 -12 6142 5629 14203 86 6 3 chr1 55961518 55963742 -226229922 + L1PA7 LINE L1 3400 5626 -528 308 331 81 6 chr1 55963753 55963913 -226229751 + MIR SINE MIR 75 246 -16 4921 37 3 0 chr1 55964262 55964851 -226228813 - LTR10C LTR ERV1 0 591 1 491 279 18 87 chr1 55965390 55965487 -226228177 + MIR SINE MIR 58 133 -129 2873 6 0 0 chr1 55965487 55965798 -226227866 + AluYa5 SINE Alu 1 311 0 491 279 18 87 chr1 55965798 55965919 -226227745 + MIR SINE MIR 133 261 -1 188 365 47 29 chr1 55965921 55966091 -226227573 + L2 LINE L2 2888 3060 -212 244 219 0 98 chr1 55966887 55966962 -226226702 + L2 LINE L2 3150 3216 -56 621 285 23 65 chr1 55966962 55967142 -226226522 + MIR SINE MIR 3 170 -92 270 0 0 0 chr1 55967142 55967172 -226226492 + (TG)n Simple_repeat Simple_repeat 2 31 0 621 285 23 65 chr1 55967172 55967251 -226226413 + MIR SINE MIR 170 251 -11 210 171 0 0 chr1 55967263 55967304 -226226360 + (CAT)n Simple_repeat Simple_repeat 2 42 0 280 296 17 43 chr1 55967351 55967466 -226226198 + MIR SINE MIR 151 262 0 667 287 22 73 chr1 55967725 55968039 -226225625 + MLT1J LTR MaLR 214 511 0 209 147 0 0 chr1 55968435 55968469 -226225195 + MIR SINE MIR 219 252 -10 500 310 54 52 chr1 55969217 55969657 -226224007 - HERV16 LTR ERVL -548 4448 4019 580 320 65 17 chr1 55969761 55970078 -226223586 - HERV16 LTR ERVL -1359 4334 3969 3414 320 49 38 chr1 55970564 55972209 -226221455 - HERV16 LTR ERVL -1767 3997 2300 1129 217 9 0 chr1 55972209 55972430 -226221234 + MER58A DNA MER1_type 2 224 0 3414 320 49 38 chr1 55972430 55973023 -226220641 - HERV16 LTR ERVL -3464 2300 1715 970 316 76 3 chr1 55973450 55973804 -226219860 - HERV16 LTR ERVL -3723 1273 894 395 237 0 11 chr1 55973895 55973988 -226219676 + HERV16 LTR ERVL 1281 1372 -3624 1080 365 37 10 chr1 55974083 55974766 -226218898 - HERV16 LTR ERVL -4216 780 80 1152 285 76 21 chr1 55974808 55975190 -226218474 - LTR16B LTR ERVL -61 403 1 2037 95 0 0 chr1 55975978 55976242 -226217422 + AluSc SINE Alu 46 309 0 258 250 17 17 chr1 55976338 55976398 -226217266 + MER5A DNA MER1_type 1 60 -129 202 275 211 18 chr1 55976434 55976543 -226217121 + L2 LINE L2 3184 3313 0 803 173 12 37 chr1 55976661 55976823 -226216841 + FRAM SINE Alu 14 171 -5 290 244 29 17 chr1 55976921 55977093 -226216571 + (TATAA)n Simple_repeat Simple_repeat 4 177 0 244 149 211 18 chr1 55977098 55977212 -226216452 - Charlie5 DNA MER1_type -86 2526 2391 5549 62 1 0 chr1 55977217 55977913 -226215751 - L1PA7 LINE L1 -13 6141 5445 1154 280 56 13 chr1 55978356 55979107 -226214557 + L1ME3A LINE L1 4963 5747 -417 1508 237 17 29 chr1 55979300 55979650 -226214014 - MLT1A1 LTR MaLR -19 346 1 717 222 69 66 chr1 55979650 55979938 -226213726 + L1ME3A LINE L1 5778 6066 -104 3366 81 5 5 chr1 55979961 55980405 -226213259 + MLT2A1 LTR ERVL 1 444 0 2261 112 0 6 chr1 55980430 55980742 -226212922 - AluSx SINE Alu -2 310 1 26 0 0 0 chr1 55980788 55980814 -226212850 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 55980885 55980910 -226212754 + AT_rich Low_complexity Low_complexity 1 25 0 354 269 155 31 chr1 55981032 55981225 -226212439 + L1ME LINE L1 5339 5555 -566 2257 163 3 0 chr1 55981625 55981987 -226211677 + THE1B LTR MaLR 2 364 0 287 287 138 0 chr1 55982451 55982545 -226211119 - MIR SINE MIR 0 262 156 397 264 109 0 chr1 55982603 55982713 -226210951 - MIR SINE MIR -105 157 36 300 322 107 7 chr1 55982735 55982884 -226210780 - L2 LINE L2 -1 3312 3149 201 135 122 54 chr1 55984038 55984112 -226209552 + MIR SINE MIR 171 249 -13 574 162 45 9 chr1 55984115 55984226 -226209438 + L1PA15 LINE L1 6046 6160 -5 5892 285 73 30 chr1 55985330 55990336 -226203328 + L1MEc LINE L1 44 5230 -985 8205 179 125 14 chr1 55990350 55992233 -226201431 + L1MCa LINE L1 18 2110 -4316 2666 242 43 45 chr1 55992236 55993246 -226200418 + L1MCa LINE L1 2393 3400 -3026 477 360 71 49 chr1 55993268 55993762 -226199902 + L1PBb LINE L1 12 516 -6333 315 377 14 0 chr1 55993965 55994103 -226199561 + L1PBb LINE L1 795 934 -5915 280 334 68 19 chr1 55994334 55994604 -226199060 + L1PBb LINE L1 1041 1563 -5285 2952 222 32 9 chr1 55994617 55995524 -226198140 + L1PBb LINE L1 718 1726 -4477 269 305 107 8 chr1 55995526 55995657 -226198007 + L1PA12 LINE L1 260 403 -7178 4044 225 20 55 chr1 55995688 55997331 -226196333 + L1PA12 LINE L1 1698 3292 -4292 9682 58 2 11 chr1 55997334 55998614 -226195050 - L1PA5 LINE L1 -3266 2880 1613 19699 44 0 1 chr1 55998610 55999007 -226194657 + L1PA5 LINE L1 2906 3302 -2852 2335 92 0 0 chr1 55999007 55999300 -226194364 + AluSg SINE Alu 2 294 -16 19699 44 0 1 chr1 55999300 56002161 -226191503 + L1PA5 LINE L1 3302 6154 0 4526 176 55 0 chr1 56002163 56003031 -226190633 + L1PA12 LINE L1 3285 4200 -3384 6645 85 4 1 chr1 56003059 56004259 -226189405 + L1PA10 LINE L1 4960 6160 -8 746 190 0 6 chr1 56004260 56004418 -226189246 + L1ME1 LINE L1 5323 5479 -687 2203 189 35 2 chr1 56004425 56004822 -226188842 + MSTB LTR MaLR 4 413 -13 1571 223 62 3 chr1 56004859 56005244 -226188420 + L1ME1 LINE L1 5528 5935 -231 356 252 32 23 chr1 56005247 56005392 -226188272 + L1MA10 LINE L1 5986 6291 -43 654 300 61 52 chr1 56006344 56006787 -226186877 + MLT1J2 LTR MaLR 4 450 0 264 314 19 50 chr1 56007252 56007411 -226186253 + HAL1b LINE L1 308 461 -887 249 33 0 0 chr1 56008429 56008459 -226185205 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 704 277 80 9 chr1 56008471 56008695 -226184969 + MIR SINE MIR 23 262 0 56 0 0 0 chr1 56009104 56009160 -226184504 + AT_rich Low_complexity Low_complexity 1 56 0 544 180 60 0 chr1 56009160 56009260 -226184404 - FLAM_A SINE Alu -36 106 1 373 303 37 0 chr1 56009282 56009391 -226184273 + L2 LINE L2 3160 3272 0 1936 130 0 3 chr1 56009422 56009737 -226183927 + AluSx SINE Alu 1 314 0 937 274 66 0 chr1 56009822 56010063 -226183601 - MIR SINE MIR -1 261 5 382 253 220 23 chr1 56010086 56010254 -226183410 + MIR SINE MIR 17 212 -50 1811 174 3 0 chr1 56010316 56010615 -226183049 + AluJb SINE Alu 1 300 -12 548 261 56 40 chr1 56010976 56011215 -226182449 + MIR SINE MIR 21 261 -1 196 333 29 38 chr1 56011208 56011313 -226182351 - MIR SINE MIR -110 152 49 * 262 320 39 39 chr1 56012112 56012215 -226181449 - L2 LINE L2 -38 3234 3132 214 338 116 40 chr1 56012309 56012507 -226181157 - L2 LINE L2 -352 2962 2750 234 327 161 31 chr1 56012805 56013028 -226180636 - MIR SINE MIR -10 252 1 346 257 60 49 chr1 56013194 56013407 -226180257 + L1M4 LINE L1 52 575 -6280 725 227 101 36 chr1 56013945 56014050 -226179614 + L1M4 LINE L1 3782 3879 -3078 6286 94 2 8 chr1 56014050 56015648 -226178016 + L1PA14 LINE L1 4565 6160 -1 725 227 101 36 chr1 56015648 56015778 -226177886 + L1M4 LINE L1 3879 3999 -2958 2350 93 3 3 chr1 56015778 56016091 -226177573 + AluSq SINE Alu 1 313 0 725 227 101 36 chr1 56016091 56016211 -226177453 + L1M4 LINE L1 3999 4161 -2796 917 90 7 21 chr1 56016388 56016525 -226177139 - L1M1 LINE L1 -567 5735 5599 1460 111 0 0 chr1 56016525 56016738 -226176926 + L1MA1 LINE L1 6079 6294 -8 388 340 22 103 chr1 56016811 56017123 -226176541 - L2 LINE L2 -5 3267 2981 217 281 34 34 chr1 56017327 56017416 -226176248 - MIR3 SINE MIR -9 199 111 214 174 0 0 chr1 56017630 56017676 -226175988 + (TA)n Simple_repeat Simple_repeat 2 47 0 261 0 0 0 chr1 56017711 56017740 -226175924 + (CA)n Simple_repeat Simple_repeat 2 30 0 1252 197 80 0 chr1 56018456 56018705 -226174959 + L1PB4 LINE L1 5887 6155 -1 337 266 110 9 chr1 56018980 56019089 -226174575 - MIR SINE MIR -57 151 32 414 315 3 54 chr1 56019151 56019341 -226174323 - MIR SINE MIR -51 211 28 1347 210 48 23 chr1 56020435 56020788 -226172876 - L1MDa LINE L1 -2193 4347 3986 1661 205 54 6 chr1 56020792 56021143 -226172521 + MLT1A2 LTR MaLR 1 368 -6 5674 227 50 60 chr1 56021153 56023189 -226170475 - L1MDa LINE L1 -2558 3982 1991 2252 104 0 0 chr1 56023189 56023488 -226170176 - AluSc SINE Alu -10 299 1 5674 227 50 60 chr1 56023488 56024666 -226168998 - L1MDa LINE L1 -4549 1991 804 781 210 39 3 chr1 56024657 56024830 -226168834 - L1MDa LINE L1 -6223 320 28 * 2095 92 7 0 chr1 56025269 56025542 -226168122 + AluSc SINE Alu 5 279 -30 905 216 11 0 chr1 56025780 56025956 -226167708 + MER45A DNA AcHobo 1 178 0 186 407 42 0 chr1 56026763 56026881 -226166783 - L2 LINE L2 -209 3063 2941 5308 132 14 3 chr1 56028038 56029376 -226164288 - L1PA15 LINE L1 -1 6164 4815 957 242 8 27 chr1 56029381 56029641 -226164023 + L1PA13 LINE L1 1319 1573 -5214 483 258 96 45 chr1 56029689 56029867 -226163797 + L2 LINE L2 3127 3313 0 382 259 65 9 chr1 56029949 56030057 -226163607 - MIR SINE MIR -133 129 16 366 403 25 31 chr1 56030166 56030486 -226163178 - L2 LINE L2 -475 2839 2522 1741 167 3 19 chr1 56030629 56030941 -226162723 + AluJb SINE Alu 1 307 -5 6519 133 17 11 chr1 56031067 56032990 -226160674 - L1MA2 LINE L1 0 6304 4372 2915 133 23 15 chr1 56032991 56033471 -226160193 + Tigger1 DNA MER2_type 1935 2418 0 252 231 37 74 chr1 56033477 56033585 -226160079 + L1ME4a LINE L1 5991 6094 -27 815 241 4 80 chr1 56033594 56033831 -226159833 + MIR SINE MIR 42 260 -2 612 319 48 20 chr1 56033906 56034157 -226159507 - MIR SINE MIR -2 260 3 216 0 0 0 chr1 56034157 56034181 -226159483 + (ATG)n Simple_repeat Simple_repeat 3 26 0 202 217 0 0 chr1 56034303 56034349 -226159315 + (TTG)n Simple_repeat Simple_repeat 2 47 0 3237 51 8 2 chr1 56034739 56035134 -226158530 + MLT2A1 LTR ERVL 1 397 -47 947 126 138 0 chr1 56035119 56035278 -226158386 - THE1B LTR MaLR -183 181 1 * 629 271 44 30 chr1 56035285 56035488 -226158176 - MIR SINE MIR -55 207 2 2270 91 0 0 chr1 56035576 56035872 -226157792 + AluY SINE Alu 1 296 -15 764 262 13 8 chr1 56036295 56036532 -226157132 + L1ME4a LINE L1 5523 5760 -361 330 291 128 79 chr1 56036567 56036832 -226156832 + L1ME4a LINE L1 5838 6115 -6 21 0 0 0 chr1 56037234 56037255 -226156409 + AT_rich Low_complexity Low_complexity 1 21 0 1553 137 162 16 chr1 56039564 56039879 -226153785 + MER46B DNA MER2_type 1 236 0 535 290 47 0 chr1 56040708 56040877 -226152787 + HERVL LTR ERVL 3042 3218 -2436 411 306 53 0 chr1 56041298 56041426 -226152238 + MIR SINE MIR 24 145 -63 806 241 55 41 chr1 56041517 56041737 -226151927 - MIR SINE MIR -6 256 34 24 0 0 0 chr1 56041897 56041921 -226151743 + AT_rich Low_complexity Low_complexity 1 24 0 1933 180 25 36 chr1 56042724 56043163 -226150501 + L1MA9 LINE L1 5841 6274 -38 782 286 93 25 chr1 56043204 56043435 -226150229 + L1ME1 LINE L1 2208 2422 -3724 471 35 0 0 chr1 56043435 56043492 -226150172 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 782 286 93 25 chr1 56043492 56043809 -226149855 + L1ME1 LINE L1 2422 2793 -3353 318 338 84 17 chr1 56043979 56044216 -226149448 + L1ME1 LINE L1 3047 3299 -2847 246 269 0 15 chr1 56044218 56044285 -226149379 + L1M4 LINE L1 1 66 -6075 946 142 27 0 chr1 56044295 56044443 -226149221 + AluSg/x SINE Alu 143 294 -18 1038 168 0 84 chr1 56044450 56044700 -226148964 + L1MA10 LINE L1 6106 6334 0 476 262 27 0 chr1 56044722 56044947 -226148717 + L1M4 LINE L1 3149 3379 -2831 406 277 7 0 chr1 56045016 56045157 -226148507 + L1M3c LINE L1 2376 2517 -3693 2970 214 43 56 chr1 56045188 56045352 -226148312 + L1M3c LINE L1 3489 3654 -2556 2243 105 0 0 chr1 56045352 56045646 -226148018 + AluSc SINE Alu 3 296 -13 2970 214 43 56 chr1 56045646 56046512 -226147152 + L1M3c LINE L1 3654 4505 -1705 2135 238 146 46 chr1 56046517 56047659 -226146005 + L1ME1 LINE L1 3803 5058 -1088 16368 138 7 18 chr1 56047667 56052610 -226141054 - L1PA7 LINE L1 -1092 5369 554 6930 56 6 0 chr1 56052610 56053740 -226139924 + L1PA7 LINE L1 5358 6469 0 2365 245 62 48 chr1 56053753 56054839 -226138825 + L1ME1 LINE L1 5030 6122 -44 521 217 33 33 chr1 56054740 56054892 -226138772 + L1MA10 LINE L1 6182 6333 -1 * 763 289 36 0 chr1 56055000 56055225 -226138439 + MIR SINE MIR 4 236 -26 529 210 37 2 chr1 56055330 56055465 -226138199 - L1MA9 LINE L1 -281 5875 5736 * 1598 177 47 44 chr1 56055460 56055867 -226137797 + L1MA9 LINE L1 5871 6278 -34 732 287 55 38 chr1 56055875 56056112 -226137552 + MIR SINE MIR 20 260 -2 1061 252 112 3 chr1 56056143 56056492 -226137172 + Charlie2b DNA MER1_type 881 1267 -1515 607 212 37 95 chr1 56056547 56056925 -226136739 + Charlie2b DNA MER1_type 2148 2503 -279 626 217 8 0 chr1 56056943 56057063 -226136601 - FLAM_A SINE Alu -16 126 6 447 321 21 36 chr1 56057143 56057336 -226136328 - MIR SINE MIR -36 226 37 1833 189 6 16 chr1 56057356 56057722 -226135942 - L1PB4 LINE L1 -13 6143 5782 246 207 0 0 chr1 56057722 56057780 -226135884 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1923 147 0 3 chr1 56057782 56058096 -226135568 - L1PB4 LINE L1 -369 5787 5475 6860 53 10 1 chr1 56058111 56059658 -226134006 - L1PA7 LINE L1 -3 6151 4588 5575 83 91 0 chr1 56059666 56060473 -226133191 + L1PA7 LINE L1 3739 4618 -1528 381 89 0 0 chr1 56060464 56060520 -226133144 - L1PB4 LINE L1 -679 5484 5429 * 808 298 43 38 chr1 56060522 56060940 -226132724 + L2 LINE L2 2756 3313 0 181 353 96 7 chr1 56060987 56061123 -226132541 - L2 LINE L2 -6 3307 3160 2288 188 24 9 chr1 56061215 56061635 -226132029 + MSTB LTR MaLR 1 426 0 2716 116 3 0 chr1 56062814 56063186 -226130478 + THE1C LTR MaLR 3 375 0 1120 162 4 75 chr1 56063289 56063542 -226130122 + MER46A DNA MER2_type 2 236 0 193 364 0 0 chr1 56063601 56063656 -226130008 - L2 LINE L2 -14 3258 3204 568 297 168 0 chr1 56063668 56063870 -226129794 + MIR SINE MIR 4 239 -23 240 250 0 0 chr1 56064098 56064150 -226129514 + LTR30 LTR ERV1 1 52 -670 635 164 0 20 chr1 56064152 56064278 -226129386 + LTR12 LTR ERV1 100 205 -509 394 230 17 0 chr1 56064370 56064489 -226129175 + LTR30 LTR ERV1 544 643 -79 685 129 0 0 chr1 56064490 56064591 -226129073 + LTR12 LTR ERV1 481 581 -133 320 320 115 37 chr1 56064692 56064936 -226128728 - L2 LINE L2 -554 2760 2498 316 246 0 29 chr1 56065160 56065229 -226128435 + MER69 DNA AcHobo 1 67 -110 446 200 44 10 chr1 56065356 56065487 -226128177 + MER69 DNA AcHobo 2380 2526 0 242 323 31 0 chr1 56065817 56065882 -226127782 + MIR SINE MIR 31 97 -111 1075 196 89 77 chr1 56065979 56066419 -226127245 + LTR56 LTR ERV1 1 445 0 389 324 22 15 chr1 56066868 56067004 -226126660 + MIR SINE MIR 6 142 -120 303 353 34 0 chr1 56067482 56067601 -226126063 - L2 LINE L2 -10 3303 3181 1457 197 36 63 chr1 56067737 56068102 -226125562 + MLT1A2 LTR MaLR 7 361 -13 710 95 9 0 chr1 56068690 56068795 -226124869 - AluSg/x SINE Alu -9 303 198 316 203 0 0 chr1 56069602 56069661 -226124003 - MLT1K LTR MaLR -7 581 523 29 0 0 0 chr1 56069675 56069704 -226123960 + AT_rich Low_complexity Low_complexity 1 29 0 250 311 90 40 chr1 56069824 56070001 -226123663 - MLT1K LTR MaLR -211 377 192 183 283 17 33 chr1 56070118 56070178 -226123486 - L2 LINE L2 -828 2486 2428 1085 256 153 107 chr1 56072865 56073910 -226119754 + MER52A LTR ERV1 663 1755 0 1308 312 56 7 chr1 56073970 56074399 -226119265 + LTR33 LTR ERVL 1 450 -71 1457 263 99 33 chr1 56075404 56076427 -226117237 + L1M4 LINE L1 1342 2400 -4559 587 195 31 8 chr1 56076503 56076631 -226117033 - MLT1A1 LTR MaLR -9 356 226 785 169 5 25 chr1 56076646 56076834 -226116830 + MSTD LTR MaLR 15 194 -171 3144 257 65 47 chr1 56076845 56078149 -226115515 + L1M4 LINE L1 4461 5798 -1159 1318 244 101 19 chr1 56078149 56078340 -226115324 + MLT1D LTR MaLR 1 175 -330 381 22 0 0 chr1 56078340 56078386 -226115278 + (TG)n Simple_repeat Simple_repeat 2 47 0 1318 244 101 19 chr1 56078386 56078661 -226115003 + MLT1D LTR MaLR 175 505 0 3144 257 65 47 chr1 56078661 56078861 -226114803 + L1M4 LINE L1 5798 5993 -964 1559 246 42 8 chr1 56078870 56079390 -226114274 + L1M4 LINE L1 1001 1538 -4846 867 248 8 0 chr1 56079400 56079642 -226114022 + L1M4c LINE L1 2983 3226 -3156 4753 164 18 23 chr1 56079645 56080741 -226112923 + L1PA16 LINE L1 5068 6155 -11 454 236 36 0 chr1 56080763 56080873 -226112791 + L1M4 LINE L1 1533 1646 -4738 41510 56 2 14 chr1 56080898 56087116 -226106548 + L1PA4 LINE L1 14 6151 -4 384 271 23 23 chr1 56087203 56087332 -226106332 + MSTA LTR MaLR 64 192 -236 1663 170 22 39 chr1 56087456 56087814 -226105850 + MSTA LTR MaLR 77 428 0 337 142 9 113 chr1 56087827 56087933 -226105731 + L1M4 LINE L1 1714 1808 -4576 1260 240 75 44 chr1 56087966 56088537 -226105127 + L1M4 LINE L1 1943 2578 -3804 1583 186 30 18 chr1 56088537 56088871 -226104793 + MER44D DNA MER2_type 1 608 -1 1260 240 75 44 chr1 56088871 56089325 -226104339 + L1M4 LINE L1 2578 3016 -3366 22 0 0 0 chr1 56089377 56089399 -226104265 + AT_rich Low_complexity Low_complexity 1 22 0 269 283 277 69 chr1 56089432 56089782 -226103882 - L3 LINE CR1 -110 1467 1045 275 143 0 86 chr1 56091191 56091235 -226102429 - MLT2D LTR ERVL 0 464 427 336 24 0 0 chr1 56091235 56091276 -226102388 + (TG)n Simple_repeat Simple_repeat 1 41 0 275 143 0 86 chr1 56091276 56091301 -226102363 - MLT2D LTR ERVL -37 427 401 6745 65 5 2 chr1 56091310 56092688 -226100976 - L1PA7 LINE L1 -4 6150 4773 894 221 137 46 chr1 56092691 56093487 -226100177 + L1M4 LINE L1 4376 5293 -1089 * 25048 147 13 44 chr1 56093485 56098100 -226095564 - L1P LINE L1 -1081 5065 593 1809 217 6 6 chr1 56098110 56098469 -226095195 - MLT2D LTR ERVL -55 359 1 272 298 156 28 chr1 56098604 56098745 -226094919 - MIR3 SINE MIR -20 188 30 285 292 83 21 chr1 56099158 56099254 -226094410 + L2 LINE L2 2685 2786 -528 33 56 0 0 chr1 56099394 56099448 -226094216 + AT_rich Low_complexity Low_complexity 1 54 0 2630 102 5 11 chr1 56099866 56100240 -226093424 + THE1C LTR MaLR 3 374 -1 225 91 0 0 chr1 56100249 56100282 -226093382 + THE1C-int LTR MaLR 1548 1580 0 2173 157 11 13 chr1 56100282 56100658 -226093006 + THE1C LTR MaLR 1 375 0 8342 132 69 48 chr1 56100658 56102201 -226091463 + THE1C-int LTR MaLR 1 1576 -4 1606 164 95 17 chr1 56102205 56102553 -226091111 + THE1C LTR MaLR 1 375 0 1792 219 20 16 chr1 56102560 56103011 -226090653 + L1MC3 LINE L1 7309 7761 -24 1967 199 15 7 chr1 56103012 56103423 -226090241 + L1MB5 LINE L1 5729 6142 -32 1831 109 31 0 chr1 56103419 56103713 -226089951 - L1PA8A LINE L1 -788 5358 5056 * 5655 73 3 1 chr1 56103711 56104451 -226089213 + L1PA8A LINE L1 5364 6104 -27 21 0 0 0 chr1 56104602 56104623 -226089041 + AT_rich Low_complexity Low_complexity 1 21 0 1513 214 12 9 chr1 56104889 56105230 -226088434 - L1MA6 LINE L1 -10 7352 7011 3150 185 23 25 chr1 56105233 56105726 -226087938 - L1MA6 LINE L1 -481 6881 6389 2444 75 0 0 chr1 56105726 56106031 -226087633 - AluY SINE Alu -6 305 1 3150 185 23 25 chr1 56106031 56106721 -226086943 - L1MA6 LINE L1 -973 6389 5687 1100 328 58 25 chr1 56106729 56107318 -226086346 + L1PA12 LINE L1 9 616 -6965 336 311 77 70 chr1 56107751 56108024 -226085640 + L1M2 LINE L1 793 1067 -5782 8540 214 32 20 chr1 56108213 56111056 -226082608 + L1PA12 LINE L1 1752 4709 -2875 1657 129 0 4 chr1 56111160 56111401 -226082263 - AluSc SINE Alu -69 240 1 246 81 0 0 chr1 56111471 56111508 -226082156 + (CA)n Simple_repeat Simple_repeat 1 37 0 3523 192 29 12 chr1 56111508 56112311 -226081353 + L1P LINE L1 4414 5229 -917 879 64 37 0 chr1 56112312 56112421 -226081243 + AluY SINE Alu 1 113 -198 7607 230 57 6 chr1 56112422 56115587 -226078077 - L1MA6 LINE L1 -2138 5070 1665 1477 324 41 33 chr1 56115700 56116407 -226077257 - L1MA6 LINE L1 -6123 1086 160 802 274 86 19 chr1 56116609 56116923 -226076741 + L1ME LINE L1 5488 5822 -299 662 300 70 26 chr1 56117003 56117233 -226076431 + MIR SINE MIR 2 241 -21 364 343 96 24 chr1 56117461 56117627 -226076037 + L2 LINE L2 3092 3269 -3 239 301 43 32 chr1 56117725 56117818 -226075846 + MIR SINE MIR 7 100 -162 257 385 31 23 chr1 56117832 56117962 -226075702 - L2 LINE L2 -43 3229 3099 478 328 120 55 chr1 56118095 56118804 -226074860 + L2 LINE L2 2552 3295 -18 283 279 0 0 chr1 56118833 56118894 -226074770 + L2 LINE L2 3249 3309 -4 1782 264 66 78 chr1 56119620 56120585 -226073079 + L1M4 LINE L1 11 1022 -5837 1155 189 49 12 chr1 56120582 56120825 -226072839 + L1PA16 LINE L1 5899 6150 -16 * 285 292 146 0 chr1 56120858 56120988 -226072676 + L1M4 LINE L1 1013 1161 -5698 255 159 0 0 chr1 56121080 56121124 -226072540 + L1M4 LINE L1 1879 1922 -5037 1057 269 75 23 chr1 56121130 56121683 -226071981 - MER76 LTR ERV -44 644 1 550 261 10 5 chr1 56121685 56121880 -226071784 + L1M4 LINE L1 1939 2134 -4825 433 256 75 12 chr1 56121888 56122138 -226071526 + L1M4 LINE L1 2212 2545 -4471 3018 244 75 33 chr1 56122234 56122972 -226070692 + L1M4 LINE L1 2475 3181 -3776 1658 182 0 27 chr1 56122972 56123269 -226070395 + AluJo SINE Alu 1 289 -23 3018 244 75 33 chr1 56123269 56124059 -226069605 + L1M4 LINE L1 3181 4028 -2929 447 275 0 0 chr1 56124294 56124454 -226069210 + L1M4 LINE L1 4137 4296 -2661 1392 214 82 26 chr1 56124455 56124576 -226069088 + MLT1A1 LTR MaLR 5 118 -247 1823 201 25 30 chr1 56124576 56124974 -226068690 + MSTD LTR MaLR 1 396 0 1392 214 82 26 chr1 56124974 56125194 -226068470 + MLT1A1 LTR MaLR 118 365 0 5593 201 83 31 chr1 56125223 56126934 -226066730 + L1M4 LINE L1 4482 6284 -701 1457 171 46 41 chr1 56127111 56127480 -226066184 + L1MA7 LINE L1 5921 6291 0 216 0 0 0 chr1 56127903 56127927 -226065737 + (TA)n Simple_repeat Simple_repeat 2 25 0 493 176 0 11 chr1 56128304 56128395 -226065269 - MLT1F1 LTR MaLR -2 565 476 857 316 9 9 chr1 56128683 56129000 -226064664 - MLT1-int LTR MaLR -770 601 285 2490 53 0 3 chr1 56129230 56129530 -226064134 + AluY SINE Alu 1 299 -12 1578 255 81 19 chr1 56129586 56130098 -226063566 - MER68 LTR ERV1 0 562 41 260 274 0 0 chr1 56130147 56130209 -226063455 - MER77 LTR ERV1 -543 62 1 398 257 158 19 chr1 56130304 56130859 -226062805 + L1ME LINE L1 1335 1904 -4951 * 3732 87 2 0 chr1 56130852 56131359 -226062305 - L1P LINE L1 -1995 4151 3644 * 5198 92 8 1 chr1 56131358 56132106 -226061558 + L1P LINE L1 4155 4907 -1239 1881 124 50 0 chr1 56132111 56132393 -226061271 + AluSg SINE Alu 7 302 -8 862 256 51 84 chr1 56132396 56133060 -226060604 + L1ME LINE L1 2103 2744 -4394 284 170 23 193 chr1 56133135 56133306 -226060358 + L1ME LINE L1 2736 2877 -4261 238 222 19 0 chr1 56133306 56133360 -226060304 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 410 344 7 13 chr1 56133464 56133618 -226060046 + L2 LINE L2 2709 2861 -453 540 314 157 14 chr1 56133644 56133994 -226059670 + L2 LINE L2 2912 3311 -2 21 0 0 0 chr1 56134263 56134284 -226059380 + AT_rich Low_complexity Low_complexity 1 21 0 221 286 48 19 chr1 56134906 56135011 -226058653 + MIR SINE MIR 106 213 -49 332 268 110 8 chr1 56135071 56135198 -226058466 + L2 LINE L2 3093 3232 -81 187 233 121 35 chr1 56236039 56236155 -225957509 - L3b LINE CR1 -133 1450 1325 197 271 128 38 chr1 56237568 56237701 -225955963 - MIR SINE MIR -111 151 7 493 273 101 0 chr1 56238146 56238334 -225955330 - MIR SINE MIR -58 204 1 204 211 0 0 chr1 56238440 56238478 -225955186 - L2 LINE L2 -24 3248 3211 217 219 206 0 chr1 56239842 56239915 -225953749 + L2 LINE L2 2985 3072 -200 357 24 0 0 chr1 56240173 56240215 -225953449 + (TG)n Simple_repeat Simple_repeat 2 43 0 516 266 63 19 chr1 56241250 56241408 -225952256 + MIR SINE MIR 28 192 -70 270 347 10 29 chr1 56241598 56241825 -225951839 + CT-rich Low_complexity Low_complexity 1 222 0 326 311 6 44 chr1 56241966 56242149 -225951515 + CT-rich Low_complexity Low_complexity 1 176 0 201 331 8 46 chr1 56242110 56242240 -225951424 + C-rich Low_complexity Low_complexity 2 126 0 * 526 282 63 5 chr1 56243362 56243514 -225950150 - MIR SINE MIR -44 218 48 2245 108 3 13 chr1 56243514 56243821 -225949843 - AluSp SINE Alu -9 304 1 526 282 63 5 chr1 56243821 56243866 -225949798 - MIR SINE MIR -214 48 7 2352 233 53 29 chr1 56243880 56244591 -225949073 + L1ME3A LINE L1 5439 6162 -8 279 299 0 11 chr1 56244646 56244733 -225948931 + MIR SINE MIR 98 183 -79 540 278 67 24 chr1 56244773 56244982 -225948682 - MIR SINE MIR -2 260 43 298 301 96 32 chr1 56245080 56245236 -225948428 + MIR3 SINE MIR 36 201 -7 248 274 169 24 chr1 56245406 56245530 -225948134 + L2 LINE L2 3126 3267 -5 3646 157 16 10 chr1 56246118 56246975 -225946689 - L1P4 LINE L1 -370 5796 4926 3085 205 34 1 chr1 56246973 56247514 -225946150 + L1 LINE L1 4188 4757 -1389 * 594 41 0 0 chr1 56247514 56247587 -225946077 + (CTATA)n Simple_repeat Simple_repeat 5 77 0 3085 205 34 1 chr1 56247587 56247713 -225945951 + L1 LINE L1 4757 4877 -1269 612 284 100 61 chr1 56247741 56248251 -225945413 + L1M4 LINE L1 3152 3681 -2465 841 160 0 0 chr1 56248371 56248496 -225945168 - MER46A DNA MER2_type -111 125 1 452 270 165 30 chr1 56248633 56248833 -225944831 + Charlie8 DNA MER1_type 50 276 -2141 21 0 0 0 chr1 56249189 56249210 -225944454 + AT_rich Low_complexity Low_complexity 1 21 0 296 252 149 32 chr1 56251017 56251252 -225942412 + L2 LINE L2 2772 3022 -250 279 122 0 0 chr1 56251643 56251692 -225941972 + (GA)n Simple_repeat Simple_repeat 2 50 0 332 303 45 54 chr1 56251929 56252176 -225941488 + MIR SINE MIR 3 248 -14 949 189 80 15 chr1 56252544 56252745 -225940919 - MER58A DNA MER1_type 0 224 11 235 314 17 42 chr1 56253526 56253644 -225940020 + MIR SINE MIR 75 189 -73 606 312 54 14 chr1 56253657 56253896 -225939768 - MIR SINE MIR 0 262 19 1440 192 58 10 chr1 56254187 56254479 -225939185 - AluJo SINE Alu -6 306 1 612 259 146 0 chr1 56254503 56254661 -225939003 + MER5A DNA MER1_type 9 189 0 338 220 19 14 chr1 56254687 56254795 -225938869 + MIR SINE MIR 19 128 -80 362 275 113 7 chr1 56254906 56255048 -225938616 + MIR SINE MIR 100 256 -6 456 19 0 0 chr1 56255814 56255867 -225937797 + (CA)n Simple_repeat Simple_repeat 1 53 0 525 288 71 10 chr1 56257331 56257529 -225936135 + L3 LINE CR1 1349 1558 -19 196 305 114 0 chr1 56257620 56257725 -225935939 - MIR SINE MIR -118 144 28 193 327 132 31 chr1 56257881 56258138 -225935526 - L2 LINE L2 -4 3268 2986 672 205 13 13 chr1 56258239 56258395 -225935269 - AluJb SINE Alu -15 297 142 192 344 61 15 chr1 56258618 56258749 -225934915 + MIR SINE MIR 126 262 0 251 328 46 23 chr1 56258775 56258906 -225934758 - L2 LINE L2 0 3272 3139 218 246 0 18 chr1 56258901 56258958 -225934706 - L2 LINE L2 0 3272 3217 * 1948 150 0 3 chr1 56259107 56259394 -225934270 - AluSx SINE Alu -26 286 1 183 241 7 149 chr1 56259619 56259760 -225933904 + L2 LINE L2 2937 3057 -215 251 236 85 38 chr1 56259824 56259930 -225933734 + MIR3 SINE MIR 88 198 -10 2008 139 3 0 chr1 56260056 56260344 -225933320 + AluSx SINE Alu 2 290 -22 343 256 135 15 chr1 56260532 56260665 -225932999 + MIR SINE MIR 114 262 0 183 80 0 0 chr1 56262740 56262765 -225930899 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 3976 68 2 0 chr1 56265360 56265847 -225927817 + HERVL LTR ERVL 139 626 -5028 14033 65 14 1 chr1 56265872 56267703 -225925961 + HERVL LTR ERVL 3545 5445 -209 810 55 0 9 chr1 56267804 56267914 -225925750 - L1PA3 LINE L1 -128 6027 5919 195 42 0 0 chr1 56268682 56268706 -225924958 + (CA)n Simple_repeat Simple_repeat 1 24 0 191 298 20 86 chr1 56268866 56269017 -225924647 + MIR SINE MIR 72 212 -50 568 236 51 18 chr1 56269222 56269427 -225924237 - MIR SINE MIR -6 256 45 526 165 12 0 chr1 56269609 56269694 -225923970 - Tigger5 DNA MER2_type -1 2322 2237 339 138 0 52 chr1 56269704 56269762 -225923902 - Tigger5 DNA MER2_type -2268 55 1 359 255 102 32 chr1 56320295 56320452 -225873212 + MER5A DNA MER1_type 3 170 -19 487 273 97 7 chr1 56320923 56321077 -225872587 - MIR SINE MIR -19 243 76 225 0 0 0 chr1 56321190 56321215 -225872449 + (CA)n Simple_repeat Simple_repeat 2 26 0 669 269 96 1 chr1 56321300 56321505 -225872159 + MIR SINE MIR 39 262 0 992 181 0 5 chr1 56322086 56322279 -225871385 + L1ME4a LINE L1 4862 5053 -1093 389 48 0 32 chr1 56322689 56322752 -225870912 + L1PA6 LINE L1 6094 6154 0 263 71 12 107 chr1 56322752 56322836 -225870828 + (TA)n Simple_repeat Simple_repeat 1 76 0 539 206 222 0 chr1 56322998 56323178 -225870486 - MER58A DNA MER1_type -1 223 4 255 284 71 31 chr1 56323321 56323448 -225870216 + MIR SINE MIR 110 241 -21 1422 160 85 18 chr1 56323498 56323779 -225869885 + AluJb SINE Alu 1 300 -12 490 78 0 0 chr1 56324020 56324084 -225869580 - Alu SINE Alu -245 65 2 304 217 101 29 chr1 56324107 56324245 -225869419 + L1ME4a LINE L1 5734 5881 -240 324 221 116 0 chr1 56324282 56324377 -225869287 + L1ME4a LINE L1 5946 6051 -70 584 301 123 44 chr1 56324461 56324940 -225868724 - LTR33 LTR ERVL -2 519 3 545 148 0 0 chr1 56324946 56325034 -225868630 - FLAM_C SINE Alu -4 139 52 342 269 150 30 chr1 56325136 56325303 -225868361 + L1ME3A LINE L1 5697 5883 -287 2119 151 9 17 chr1 56325848 56326243 -225867421 + L1MB3 LINE L1 5735 6127 -56 460 279 78 34 chr1 56326996 56327175 -225866489 + MIR SINE MIR 51 237 -25 1860 124 0 7 chr1 56327249 56327522 -225866142 + AluSx SINE Alu 1 271 -41 288 186 0 0 chr1 56327622 56327681 -225865983 - L1MC5 LINE L1 -812 7149 7091 * 4226 178 65 31 chr1 56327678 56328357 -225865307 - L1MB8 LINE L1 -1 6177 5437 1671 114 70 15 chr1 56328357 56328683 -225864981 - AluSx SINE Alu 0 312 1 4226 178 65 31 chr1 56328683 56329077 -225864587 - L1MB8 LINE L1 -741 5437 5058 667 183 0 50 chr1 56329186 56329306 -225864358 + FLAM_A SINE Alu 8 121 -21 310 239 65 32 chr1 56329374 56329529 -225864135 - L1MC5 LINE L1 -408 7553 7394 811 192 27 0 chr1 56330895 56331041 -225862623 + AluJb SINE Alu 162 311 -1 382 187 0 13 chr1 56331046 56331121 -225862543 + MLT1A1 LTR MaLR 292 365 0 187 254 90 0 chr1 56331396 56331463 -225862201 + L2 LINE L2 2902 2974 -298 260 295 114 0 chr1 56331790 56331895 -225861769 - L3 LINE CR1 -581 996 880 1054 163 0 77 chr1 56332455 56332676 -225860988 + MER3 DNA MER1_type 6 209 0 519 114 13 0 chr1 56333179 56333258 -225860406 + FLAM SINE Alu 54 133 -10 940 198 61 5 chr1 56333386 56333583 -225860081 + MER3 DNA MER1_type 2 209 0 2274 98 0 3 chr1 56333797 56334104 -225859560 + AluSq SINE Alu 1 306 -7 241 274 16 0 chr1 56334611 56334673 -225858991 + MIR SINE MIR 128 190 -72 1856 146 14 0 chr1 56334681 56334961 -225858703 + AluSx SINE Alu 1 284 -28 2258 85 3 0 chr1 56337817 56338112 -225855552 + AluSp SINE Alu 1 296 -17 295 276 125 68 chr1 56338219 56338276 -225855388 - LTR16C LTR ERVL -1 490 438 1246 178 17 74 chr1 56338276 56338574 -225855090 + AluJo SINE Alu 2 282 -30 295 276 125 68 chr1 56338574 56338708 -225854956 - LTR16C LTR ERVL -53 438 288 566 229 110 0 chr1 56338727 56338845 -225854819 + FLAM_A SINE Alu 1 131 -2 310 331 19 57 chr1 56339087 56339244 -225854420 + L1ME LINE L1 461 611 -5919 464 235 229 0 chr1 56339654 56339807 -225853857 + MIR SINE MIR 9 196 -66 2243 104 10 0 chr1 56339999 56340308 -225853356 + AluSx SINE Alu 1 312 0 759 307 53 21 chr1 56340496 56340923 -225852741 - LTR16A LTR ERVL -4 453 6 657 178 0 78 chr1 56340976 56341105 -225852559 + AluJb SINE Alu 88 206 -106 374 231 37 46 chr1 56341212 56341320 -225852344 + MIR SINE MIR 107 213 -49 2180 113 0 0 chr1 56341674 56341983 -225851681 + AluSx SINE Alu 1 309 -3 442 294 79 23 chr1 56342004 56342218 -225851446 + L1ME LINE L1 2406 2631 -3909 2032 106 27 0 chr1 56342218 56342510 -225851154 - AluSx SINE Alu -12 300 1 664 298 112 57 chr1 56342733 56343152 -225850512 - HERV16 LTR ERVL -414 5350 4909 812 301 58 44 chr1 56343158 56343304 -225850360 - HERV16 LTR ERVL -2069 2927 2785 1800 184 21 52 chr1 56343304 56343690 -225849974 + MLT1A2 LTR MaLR 1 374 0 812 301 58 44 chr1 56343690 56343885 -225849779 - HERV16 LTR ERVL -2211 2785 2581 5814 61 19 19 chr1 56344010 56345001 -225848663 - SVA Other Other -520 866 1 719 214 52 47 chr1 56345348 56345540 -225848124 + MIR SINE MIR 68 260 -2 398 250 83 26 chr1 56345674 56345830 -225847834 + L2 LINE L2 2917 3081 -191 481 272 61 7 chr1 56346373 56346520 -225847144 - MIR SINE MIR -88 174 20 5401 131 37 12 chr1 56347095 56348010 -225845654 + L1MA9 LINE L1 5335 6272 -40 1202 154 33 14 chr1 56348010 56348224 -225845440 + AluJb SINE Alu 1 218 -94 638 322 78 22 chr1 56348258 56348705 -225844959 - HERV16 LTR ERVL -3729 1925 1454 1660 88 0 0 chr1 56348875 56349091 -225844573 - AluSq SINE Alu -97 216 1 904 131 0 0 chr1 56349100 56349222 -225844442 - FLAM_C SINE Alu -9 124 3 1807 152 0 3 chr1 56349234 56349524 -225844140 - AluSx SINE Alu -18 294 6 565 227 0 47 chr1 56350097 56350225 -225843439 - MIR SINE MIR -136 126 5 2070 65 18 7 chr1 56350289 56350597 -225843067 - AluY SINE Alu 0 311 1 402 239 15 54 chr1 56350620 56350750 -225842914 - MIR SINE MIR -106 156 32 2036 128 43 0 chr1 56350762 56351091 -225842573 - L1MC1 LINE L1 -1 6332 5990 6195 211 18 32 chr1 56351098 56352323 -225841341 - L1M4 LINE L1 -785 5361 4162 652 49 0 0 chr1 56352323 56352405 -225841259 - L1PA5 LINE L1 0 6154 6073 6195 211 18 32 chr1 56352405 56352777 -225840887 - L1M4 LINE L1 -1984 4162 3786 674 219 38 99 chr1 56352827 56352982 -225840682 - L1MC5 LINE L1 -58 7903 7773 2329 93 0 0 chr1 56352982 56353283 -225840381 + AluSq SINE Alu 1 301 -12 674 219 38 99 chr1 56353283 56353419 -225840245 - L1MC5 LINE L1 -188 7773 7630 328 172 0 35 chr1 56353420 56353478 -225840186 + AluSp SINE Alu 131 186 -117 242 254 0 17 chr1 56353824 56353883 -225839781 + C-rich Low_complexity Low_complexity 1 58 0 216 129 16 32 chr1 56353908 56353970 -225839694 + CT-rich Low_complexity Low_complexity 2 62 0 535 318 95 9 chr1 56354258 56354469 -225839195 - HERV16 LTR ERVL -2851 2145 1917 1107 219 50 23 chr1 56354470 56354854 -225838810 + L1M4c LINE L1 2105 2498 -3886 915 151 7 7 chr1 56354859 56355002 -225838662 + AluJb SINE Alu 137 282 -30 4733 129 38 1 chr1 56355002 56355027 -225838637 + L1MA6 LINE L1 5474 6295 -5 4784 126 38 1 chr1 56355027 56355795 -225837869 + L1MA6 LINE L1 5500 6295 -5 697 176 8 30 chr1 56355806 56355929 -225837735 + FLAM_A SINE Alu 1 122 -180 225 0 0 0 chr1 56355929 56355954 -225837710 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 5216 160 29 80 chr1 56355972 56356139 -225837525 + L1 LINE L1 4152 4326 -1820 1320 137 36 0 chr1 56356139 56356358 -225837306 + L1PA16 LINE L1 5940 6166 0 5216 160 29 80 chr1 56356358 56356419 -225837245 + L1 LINE L1 4326 4389 -1757 2184 96 38 7 chr1 56356419 56356711 -225836953 + AluSx SINE Alu 1 301 -11 5216 160 29 80 chr1 56356711 56357739 -225835925 + L1 LINE L1 4389 5345 -801 4787 68 7 0 chr1 56357739 56358315 -225835349 - SVA Other Other 0 1386 807 1287 253 83 14 chr1 56359547 56359910 -225833754 - LTR16C LTR ERVL -4 487 100 2840 68 3 0 chr1 56360392 56360757 -225832907 - L1PB1 LINE L1 -4 6147 5782 26 0 0 0 chr1 56360757 56360783 -225832881 + AT_rich Low_complexity Low_complexity 1 26 0 233 193 18 18 chr1 56360792 56360849 -225832815 - L1MCa LINE L1 -4353 2073 2017 * 8509 202 68 13 chr1 56360842 56363448 -225830216 - L1P5 LINE L1 -364 5787 3028 404 303 30 0 chr1 56363450 56363582 -225830082 + L2 LINE L2 2943 3078 -194 240 350 63 14 chr1 56363850 56363993 -225829671 + L2 LINE L2 3123 3272 0 1245 265 5 19 chr1 56364080 56364466 -225829198 - LTR16C LTR ERVL 0 491 73 255 159 0 0 chr1 56364590 56364634 -225829030 - Charlie8 DNA MER1_type -16 2401 2358 385 237 75 75 chr1 56364796 56364969 -225828695 - Charlie8 DNA MER1_type -2145 272 100 649 197 0 16 chr1 56364983 56365110 -225828554 + FLAM_C SINE Alu 5 129 -4 1516 216 117 10 chr1 56365114 56365525 -225828139 + MLT1C LTR MaLR 6 460 -7 180 194 15 60 chr1 56365650 56365717 -225827947 - L2 LINE L2 -181 3091 3028 430 301 117 11 chr1 56365780 56366062 -225827602 - L2 LINE L2 -781 2533 2222 327 236 65 65 chr1 56367065 56367264 -225826400 - MIR SINE MIR -29 233 35 243 343 19 0 chr1 56367604 56367712 -225825952 + MIR SINE MIR 36 145 -117 651 169 0 0 chr1 56367782 56367906 -225825758 + (CAT)n Simple_repeat Simple_repeat 2 125 0 215 242 195 0 chr1 56368055 56368183 -225825481 - L2 LINE L2 -1222 2092 1940 439 295 175 14 chr1 56369454 56369803 -225823861 - L2 LINE L2 -4 3268 2864 356 292 83 6 chr1 56370581 56370749 -225822915 - MIR SINE MIR -2 260 80 806 282 42 28 chr1 56370888 56371243 -225822421 - L1ME4a LINE L1 -195 5926 5567 681 267 5 29 chr1 56371428 56371638 -225822026 + MIR SINE MIR 2 206 -56 568 268 66 30 chr1 56372833 56373031 -225820633 - MIR SINE MIR -30 232 28 299 393 47 0 chr1 56373126 56373276 -225820388 - L2 LINE L2 -212 3060 2904 436 289 46 0 chr1 56373803 56373955 -225819709 - L3 LINE CR1 -222 1355 1197 207 0 0 0 chr1 56374531 56374554 -225819110 + (T)n Simple_repeat Simple_repeat 1 23 0 557 261 57 24 chr1 56375521 56375732 -225817932 + MIR SINE MIR 32 249 -13 258 280 88 0 chr1 56375950 56376075 -225817589 + L2 LINE L2 2622 2757 -557 300 291 200 9 chr1 56376077 56376307 -225817357 + L2 LINE L2 2989 3262 -10 228 373 102 17 chr1 56376526 56376703 -225816961 + MIR SINE MIR 21 212 -50 336 301 115 6 chr1 56376777 56376933 -225816731 + L2 LINE L2 1785 1957 -1357 254 314 0 14 chr1 56377056 56377126 -225816538 + L2 LINE L2 3157 3225 -47 186 333 60 12 chr1 56377414 56377498 -225816166 - MIR3 SINE MIR -52 156 69 338 271 178 0 chr1 56377611 56377740 -225815924 + L2 LINE L2 3111 3262 -10 1044 134 18 0 chr1 56378134 56378298 -225815366 - MLT2B2 LTR ERVL -348 167 1 204 214 0 0 chr1 56378404 56378446 -225815218 - L2 LINE L2 -95 3218 3177 303 309 21 10 chr1 56378741 56378838 -225814826 - MIR SINE MIR -89 119 22 269 202 125 10 chr1 56379684 56379788 -225813876 - MIR SINE MIR -94 168 53 182 390 34 14 chr1 56380509 56380655 -225813009 + L2 LINE L2 3122 3270 -2 432 0 0 0 chr1 56380702 56380750 -225812914 + (TG)n Simple_repeat Simple_repeat 2 49 0 261 307 61 0 chr1 56381195 56381309 -225812355 + L2 LINE L2 2866 2986 -286 1238 221 61 64 chr1 56381363 56381707 -225811957 - LTR16C LTR ERVL 0 491 149 775 269 42 0 chr1 56381826 56382042 -225811622 - MIR SINE MIR 0 262 38 487 255 110 0 chr1 56382317 56382462 -225811202 + MIR SINE MIR 21 181 -81 215 77 0 26 chr1 56383042 56383081 -225810583 + (TAA)n Simple_repeat Simple_repeat 3 40 0 2502 56 0 0 chr1 56383081 56383401 -225810263 + AluY SINE Alu 1 320 0 582 204 95 0 chr1 56383410 56383547 -225810117 - MIR SINE MIR -28 234 85 842 253 151 8 chr1 56383636 56384019 -225809645 + L2 LINE L2 2876 3313 0 195 331 44 44 chr1 56384049 56384209 -225809455 + L2 LINE L2 2109 2268 -1046 194 313 102 12 chr1 56384658 56384824 -225808840 + L2 LINE L2 2873 3053 -219 702 284 60 16 chr1 56385214 56385464 -225808200 + MIR SINE MIR 2 262 0 301 319 63 29 chr1 56385602 56385840 -225807824 + L2 LINE L2 3001 3246 -26 489 50 0 0 chr1 56386766 56386826 -225806838 - L1P2 LINE L1 -443 5711 5652 4834 60 2 0 chr1 56387113 56387709 -225805955 + L1PA6 LINE L1 5557 6153 -1 226 319 48 24 chr1 56387709 56387875 -225805789 - L2 LINE L2 -530 2784 2615 220 264 57 28 chr1 56388356 56388462 -225805202 + MIR SINE MIR 44 152 -56 337 266 116 59 chr1 56388561 56388617 -225805047 - MIR SINE MIR -6 256 205 351 96 0 0 chr1 56388617 56388669 -225804995 + (CA)n Simple_repeat Simple_repeat 2 53 0 337 266 116 59 chr1 56388669 56388728 -225804936 - MIR SINE MIR -57 205 151 1788 135 33 40 chr1 56388728 56389031 -225804633 + AluSx SINE Alu 1 301 -11 816 48 0 0 chr1 56389036 56389141 -225804523 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 337 266 116 59 chr1 56389141 56389238 -225804426 - MIR SINE MIR -114 148 26 386 298 93 37 chr1 56389537 56389698 -225803966 + MIR SINE MIR 67 236 -26 950 222 53 0 chr1 56389711 56389936 -225803728 + MIR SINE MIR 23 259 -3 188 146 0 42 chr1 56390172 56390220 -225803444 + (TCTCCC)n Simple_repeat Simple_repeat 5 50 0 191 224 0 129 chr1 56390235 56390267 -225803397 + MIR SINE MIR 172 207 -55 1205 255 75 21 chr1 56390267 56390691 -225802973 + MLT1J2 LTR MaLR 3 449 -1 191 224 0 129 chr1 56390691 56390743 -225802921 + MIR SINE MIR 207 245 -17 425 238 126 48 chr1 56390951 56391182 -225802482 - MIR SINE MIR -1 261 13 8119 147 16 16 chr1 56391509 56391846 -225801818 - L1P4 LINE L1 -412 5751 5415 2316 110 0 0 chr1 56391846 56392147 -225801517 - AluSx SINE Alu -11 301 1 8119 147 16 16 chr1 56392147 56393660 -225800004 - L1P4 LINE L1 -748 5415 3905 28 48 0 0 chr1 56393871 56393913 -225799751 + AT_rich Low_complexity Low_complexity 1 42 0 1218 264 56 40 chr1 56393943 56394706 -225798958 - L1ME LINE L1 -4515 1565 784 1145 254 51 27 chr1 56394840 56395214 -225798450 - L1MC4a LINE L1 -881 6927 6545 674 219 214 0 chr1 56395247 56395285 -225798379 - L1ME1 LINE L1 -5 6161 6132 2222 97 7 10 chr1 56395285 56395583 -225798081 - AluSc SINE Alu -12 297 1 674 219 214 0 chr1 56395583 56395754 -225797910 - L1ME1 LINE L1 -34 6132 5907 1646 179 11 21 chr1 56395793 56396078 -225797586 - AluJo SINE Alu -30 282 1 2141 168 52 66 chr1 56396078 56396578 -225797086 + LTR54 LTR ERV1 18 510 0 2171 210 55 8 chr1 56396578 56397088 -225796576 - L1ME1 LINE L1 -252 5912 5379 23 0 0 0 chr1 56397116 56397139 -225796525 + AT_rich Low_complexity Low_complexity 1 23 0 240 246 43 0 chr1 56397318 56397387 -225796277 + MIR SINE MIR 81 152 -56 219 191 0 0 chr1 56397493 56397535 -225796129 + MIR SINE MIR 200 241 -21 2143 141 22 3 chr1 56397558 56397928 -225795736 - L1MB3 LINE L1 0 6183 5807 567 235 31 6 chr1 56397928 56398090 -225795574 - L1M4 LINE L1 -3547 2599 2434 2252 101 3 0 chr1 56398121 56398408 -225795256 - AluSg SINE Alu -22 288 1 289 269 13 0 chr1 56398409 56398487 -225795177 - MIR SINE MIR -98 164 86 746 191 0 0 chr1 56398503 56398629 -225795035 - FLAM_C SINE Alu -6 127 2 448 235 79 40 chr1 56398646 56398931 -225794733 + L1MC4 LINE L1 6962 7212 -749 757 172 13 45 chr1 56398941 56399098 -225794566 - MLT1D LTR MaLR -7 498 347 1274 160 70 47 chr1 56399099 56399443 -225794221 - MSTD LTR MaLR 0 396 3 1097 180 73 90 chr1 56399445 56399801 -225793863 - MLT1D LTR MaLR -155 350 1 396 334 45 7 chr1 56399801 56400147 -225793517 + L1MC5 LINE L1 7168 7394 -414 2475 79 0 0 chr1 56400206 56400511 -225793153 + AluY SINE Alu 1 305 -6 919 265 126 10 chr1 56400541 56400835 -225792829 - LTR16C LTR ERVL -12 479 152 25 0 0 0 chr1 56401039 56401064 -225792600 + AT_rich Low_complexity Low_complexity 1 25 0 201 211 0 0 chr1 56401246 56401298 -225792366 + CT-rich Low_complexity Low_complexity 3 54 0 2177 117 7 0 chr1 56401704 56402002 -225791662 - AluSx SINE Alu -12 300 1 2121 146 9 3 chr1 56402798 56403127 -225790537 + Tigger1 DNA MER2_type 2062 2392 -26 12134 157 30 5 chr1 56403144 56403778 -225789886 + L1PA13 LINE L1 3037 3654 -2509 183 42 0 0 chr1 56403778 56403802 -225789862 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 12134 157 30 5 chr1 56403802 56406255 -225787409 + L1PA13 LINE L1 3654 6163 0 471 218 0 0 chr1 56406404 56406528 -225787136 - L1MA7 LINE L1 0 6291 6168 2243 113 3 13 chr1 56406529 56406839 -225786825 - AluSp SINE Alu -6 307 1 781 182 0 0 chr1 56406844 56406976 -225786688 - FLAM_C SINE Alu -10 133 2 1054 256 70 0 chr1 56406977 56407262 -225786402 - MLT1A1 LTR MaLR -60 305 1 1372 149 0 14 chr1 56407457 56407671 -225785993 - AluSx SINE Alu -101 211 1 1205 163 92 61 chr1 56407724 56408019 -225785645 + AluSp SINE Alu 1 304 -9 1873 212 24 10 chr1 56408937 56409347 -225784317 - MER97a DNA MER1_type? -219 675 260 513 324 20 32 chr1 56409348 56409595 -225784069 + L1MDa LINE L1 21 264 -6276 * 527 279 14 7 chr1 56409593 56409869 -225783795 + L1M4 LINE L1 4014 4360 -1786 225 94 0 0 chr1 56409888 56409920 -225783744 + (A)n Simple_repeat Simple_repeat 1 32 0 2152 124 0 16 chr1 56409926 56410232 -225783432 + AluSx SINE Alu 1 301 -11 8127 180 37 52 chr1 56410319 56410729 -225782935 + L1MB8 LINE L1 3450 3864 -2314 2268 122 3 0 chr1 56410729 56411040 -225782624 + AluSx SINE Alu 1 312 0 279 0 0 0 chr1 56411043 56411074 -225782590 + (TA)n Simple_repeat Simple_repeat 2 32 0 8127 180 37 52 chr1 56411074 56412198 -225781466 + L1MB8 LINE L1 3866 5005 -1173 889 107 15 0 chr1 56412198 56412329 -225781335 - L1MA2 LINE L1 0 6304 6172 8127 180 37 52 chr1 56412329 56412935 -225780729 + L1MB8 LINE L1 5005 5618 -560 1861 167 3 16 chr1 56412935 56413247 -225780417 + AluJo SINE Alu 3 310 -2 8127 180 37 52 chr1 56413247 56413492 -225780172 + L1MB8 LINE L1 5618 5793 -385 216 67 0 0 chr1 56413492 56413522 -225780142 + (TA)n Simple_repeat Simple_repeat 1 30 0 8127 180 37 52 chr1 56413522 56413698 -225779966 + L1MB8 LINE L1 5793 5970 -208 2406 207 12 23 chr1 56413726 56414242 -225779422 + L1ME1 LINE L1 5637 6146 -20 996 226 53 12 chr1 56414313 56414556 -225779108 - MER97c DNA MER1_type? -833 257 5 260 281 177 0 chr1 56414579 56414675 -225778989 - LTR16C LTR ERVL -378 113 1 322 274 100 70 chr1 56414729 56415058 -225778606 + L1MC4 LINE L1 7704 8042 0 545 292 45 6 chr1 56415401 56415579 -225778085 + MLT1K LTR MaLR 317 501 -87 1207 218 68 0 chr1 56415693 56415945 -225777719 + MLT1H1 LTR MaLR 127 395 -160 470 253 28 60 chr1 56416396 56416578 -225777086 + MIR SINE MIR 20 195 -67 221 202 0 85 chr1 56416643 56416737 -225776927 + CT-rich Low_complexity Low_complexity 2 87 0 2472 71 0 3 chr1 56417146 56417442 -225776222 + AluY SINE Alu 1 295 -16 2214 127 0 3 chr1 56417569 56417877 -225775787 + AluSx SINE Alu 1 307 -5 288 0 0 0 chr1 56417878 56417910 -225775754 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr1 56417910 56417942 -225775722 + AT_rich Low_complexity Low_complexity 1 32 0 390 297 97 14 chr1 56418201 56418491 -225775173 + L2 LINE L2 2459 2772 -542 966 243 28 0 chr1 56418503 56418717 -225774947 - MER58A DNA MER1_type -4 220 1 239 79 26 0 chr1 56418870 56418908 -225774756 + (TC)n Simple_repeat Simple_repeat 1 39 0 1928 154 30 0 chr1 56418908 56419206 -225774458 - AluJb SINE Alu -5 307 1 861 274 66 70 chr1 56419285 56419753 -225773911 + L1MC4a LINE L1 5562 6027 -94 305 277 40 0 chr1 56419771 56419872 -225773792 + MER91C DNA MER1_type 1 105 -35 190 314 12 0 chr1 56420137 56420223 -225773441 - L2 LINE L2 -275 2997 2911 459 241 20 35 chr1 56421835 56421985 -225771679 + MIR SINE MIR 19 165 -62 235 239 345 0 chr1 56422449 56422562 -225771102 + MIR SINE MIR 111 262 0 2323 209 11 6 chr1 56422590 56423091 -225770573 - L1ME1 LINE L1 -5 6161 5650 321 256 11 0 chr1 56423091 56423181 -225770483 - MIR3 SINE MIR -9 199 109 610 229 159 13 chr1 56423207 56423364 -225770300 + MER5A DNA MER1_type 9 188 -1 1133 136 108 23 chr1 56423922 56424136 -225769528 + MER46A DNA MER2_type 1 232 -4 33 43 0 0 chr1 56424745 56424792 -225768872 + AT_rich Low_complexity Low_complexity 1 47 0 225 337 119 0 chr1 56424993 56425094 -225768570 + MER5A DNA MER1_type 14 126 -63 314 289 11 11 chr1 56425116 56425206 -225768458 - MIR SINE MIR -61 147 58 978 243 58 12 chr1 56425818 56426061 -225767603 - MIR SINE MIR 0 262 9 234 291 64 104 chr1 56426065 56426316 -225767348 - L2 LINE L2 -31 3241 3001 228 268 32 98 chr1 56427169 56427292 -225766372 + MIR SINE MIR 92 206 -56 185 302 72 58 chr1 56427684 56427823 -225765841 - MIR3 SINE MIR -61 147 7 255 280 25 51 chr1 56428128 56428246 -225765418 + MIR3 SINE MIR 68 182 -26 437 286 27 0 chr1 56428579 56428755 -225764909 + MIR SINE MIR 31 212 -50 575 236 83 13 chr1 56429012 56429169 -225764495 + MIR3 SINE MIR 38 205 -3 400 329 29 6 chr1 56429807 56429977 -225763687 - MIR3 SINE MIR -12 196 23 294 253 46 11 chr1 56430015 56430102 -225763562 - MIR3 SINE MIR -36 172 83 181 217 174 0 chr1 56430113 56430182 -225763482 - L3 LINE CR1 -54 1523 1443 1989 159 3 0 chr1 56430329 56430631 -225763033 + AluSx SINE Alu 1 303 -9 221 304 0 0 chr1 56430939 56431008 -225762656 + L2 LINE L2 3245 3313 0 186 260 120 0 chr1 56432270 56432320 -225761344 + L2 LINE L2 3257 3312 -1 284 340 69 13 chr1 56432367 56432526 -225761138 + MIR SINE MIR 20 187 -75 782 246 273 9 chr1 56432558 56432903 -225760761 + MLT1J2 LTR MaLR 15 450 0 182 111 0 0 chr1 56433048 56433075 -225760589 - MIR SINE MIR -117 145 119 410 276 20 0 chr1 56433414 56433512 -225760152 + MIR SINE MIR 27 126 -82 2391 59 3 39 chr1 56434026 56434332 -225759332 + AluY SINE Alu 1 295 -16 213 250 0 0 chr1 56434411 56434459 -225759205 + (TTA)n Simple_repeat Simple_repeat 2 49 0 215 276 234 14 chr1 56434459 56434604 -225759060 + MIR SINE MIR 30 206 -56 657 246 34 6 chr1 56434682 56434857 -225758807 + MIR SINE MIR 6 185 -77 1511 198 59 31 chr1 56434994 56435352 -225758312 + MLT1B LTR MaLR 21 388 -2 337 291 77 36 chr1 56435535 56435755 -225757909 - L2 LINE L2 -471 2843 2615 320 248 40 10 chr1 56436237 56436338 -225757326 - MIR SINE MIR -74 188 85 330 233 107 0 chr1 56436725 56436828 -225756836 - MIR SINE MIR -60 148 35 398 275 135 20 chr1 56437136 56437336 -225756328 - MIR SINE MIR -18 244 22 232 146 0 0 chr1 56437942 56437983 -225755681 + MIR SINE MIR 104 144 -118 202 180 40 0 chr1 56437994 56438044 -225755620 - MIR SINE MIR -71 191 140 198 238 0 0 chr1 56438106 56438148 -225755516 - L2 LINE L2 -89 3183 3142 380 287 25 0 chr1 56438927 56439049 -225754615 - MIR SINE MIR -75 187 63 251 329 35 35 chr1 56439166 56439309 -225754355 - MER5B DNA MER1_type -16 162 20 3078 45 16 2 chr1 56439388 56439864 -225753800 + L1P2 LINE L1 5157 5639 -515 725 273 62 0 chr1 56440034 56440261 -225753403 - MIR SINE MIR -4 258 18 280 305 79 30 chr1 56441640 56441804 -225751860 + MIR SINE MIR 79 250 -12 465 66 0 0 chr1 56441821 56441882 -225751782 + (ATG)n Simple_repeat Simple_repeat 3 63 0 180 345 48 28 chr1 56443259 56443404 -225750260 - L2 LINE L2 -223 3049 2902 897 210 13 71 chr1 56443655 56443893 -225749771 + L1ME3A LINE L1 5433 5656 -508 2110 172 70 14 chr1 56443893 56444335 -225749329 + Charlie1b DNA MER1_type 1 467 -56 484 217 43 108 chr1 56444434 56444692 -225748972 + L1ME3A LINE L1 5711 5951 -219 987 170 38 68 chr1 56444945 56445180 -225748484 + L1MC5 LINE L1 6683 6910 -1051 2802 209 54 71 chr1 56446199 56446454 -225747210 + L1MC5 LINE L1 6923 7181 -780 1715 140 4 4 chr1 56446454 56446704 -225746960 + AluJb SINE Alu 1 250 -62 2802 209 54 71 chr1 56446704 56446721 -225746943 + L1MC5 LINE L1 7181 7197 -764 261 0 0 0 chr1 56446721 56446750 -225746914 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2802 209 54 71 chr1 56446750 56447488 -225746176 + L1MC5 LINE L1 7197 7917 -44 705 337 79 6 chr1 56448486 56448881 -225744783 - LTR16A LTR ERVL 0 457 22 233 259 19 0 chr1 56449944 56449998 -225743666 + HAL1 LINE L1 326 380 -2127 792 202 126 0 chr1 56450052 56450250 -225743414 - MIR SINE MIR -26 236 14 1572 258 106 49 chr1 56450375 56451313 -225742351 + HAL1 LINE L1 773 1763 -744 606 245 19 43 chr1 56451556 56451764 -225741900 + HAL1 LINE L1 2237 2439 -68 221 264 23 0 chr1 56452286 56452373 -225741291 - MIR SINE MIR -79 129 41 589 251 74 6 chr1 56452859 56453022 -225740642 + MIR SINE MIR 2 175 -87 549 279 81 15 chr1 56453012 56453209 -225740455 - MIR SINE MIR -49 213 4 * 383 253 0 0 chr1 56453211 56453306 -225740358 + MIR SINE MIR 144 238 -24 375 261 27 65 chr1 56453313 56453497 -225740167 - L2 LINE L2 -15 3257 3081 548 288 19 28 chr1 56454236 56454451 -225739213 - MIR SINE MIR -11 251 39 320 252 37 65 chr1 56455655 56455762 -225737902 + L2 LINE L2 2957 3060 -253 410 221 0 0 chr1 56456670 56456756 -225736908 + MIR SINE MIR 57 142 -120 478 222 87 8 chr1 56457121 56457247 -225736417 - MIR SINE MIR -17 245 110 229 192 55 41 chr1 56457235 56457308 -225736356 - L2 LINE L2 -182 3090 3017 * 1324 214 128 27 chr1 56458100 56458474 -225735190 - MLT1J2 LTR MaLR -37 413 2 201 184 0 0 chr1 56458651 56458689 -225734975 + L2 LINE L2 3182 3219 -94 809 165 30 6 chr1 56458770 56458934 -225734730 - MIR SINE MIR -22 240 73 192 158 0 26 chr1 56458921 56458959 -225734705 + L2 LINE L2 3270 3306 -7 * 276 254 42 28 chr1 56459634 56459705 -225733959 + MIR3 SINE MIR 100 171 -37 393 200 0 0 chr1 56459738 56459813 -225733851 - L2 LINE L2 0 3313 3239 297 223 131 62 chr1 56459818 56459948 -225733716 + L2 LINE L2 3175 3313 0 2554 54 0 7 chr1 56460187 56460485 -225733179 + AluY SINE Alu 1 296 -15 274 270 36 45 chr1 56460497 56460608 -225733056 + L1MC4 LINE L1 7361 7470 -572 497 297 91 0 chr1 56460912 56461087 -225732577 - MIR SINE MIR -71 191 1 286 250 0 0 chr1 56461110 56461170 -225732494 - L2 LINE L2 -13 3259 3200 207 152 0 0 chr1 56462484 56462530 -225731134 + GA-rich Low_complexity Low_complexity 2 47 0 3563 157 81 35 chr1 56463030 56463780 -225729884 + LTR1 LTR ERV1 1 785 0 2596 66 0 0 chr1 56463829 56464130 -225729534 - AluY SINE Alu -10 301 1 1710 159 7 53 chr1 56464500 56464802 -225728862 + AluJb SINE Alu 2 289 -23 282 309 98 8 chr1 56464885 56465008 -225728656 - L2 LINE L2 0 3313 3180 270 360 0 0 chr1 56465030 56465116 -225728548 - L3 LINE CR1 -104 1473 1388 1018 303 94 30 chr1 56465263 56465698 -225727966 - MLT1J LTR MaLR -48 463 1 545 223 9 0 chr1 56465798 56465910 -225727754 - MER63 DNA MER1_type 0 1062 950 2345 65 0 0 chr1 56465910 56466185 -225727479 + AluY SINE Alu 21 295 -16 935 189 84 0 chr1 56466252 56466479 -225727185 - MER63 DNA MER1_type -815 246 1 840 245 32 53 chr1 56466624 56467003 -225726661 - HAL1 LINE L1 -1301 1206 836 774 225 107 12 chr1 56467051 56467214 -225726450 + L1MC4 LINE L1 6824 7021 -1021 324 0 0 0 chr1 56467214 56467250 -225726414 + (CA)n Simple_repeat Simple_repeat 1 36 0 774 225 107 12 chr1 56467250 56467339 -225726325 + L1MC4 LINE L1 7021 7100 -942 3002 149 6 14 chr1 56467340 56467830 -225725834 + MER54B LTR ERVL 1 486 -307 * 9187 110 3 0 chr1 56467816 56469160 -225724504 + Tigger1 DNA MER2_type 1071 2418 0 4056 161 31 40 chr1 56470421 56471192 -225722472 + MER54B LTR ERVL 1 764 -29 1130 67 8 0 chr1 56471192 56471326 -225722338 + AluSq/x SINE Alu 1 135 -178 26278 145 13 23 chr1 56471326 56472941 -225720723 + L1PA10 LINE L1 3 1632 -4878 2372 93 0 10 chr1 56472941 56473241 -225720423 + AluY SINE Alu 1 297 -14 26278 145 13 23 chr1 56473241 56478194 -225715470 + L1PA10 LINE L1 1632 6510 0 1112 109 27 0 chr1 56478236 56478383 -225715281 + AluSg/x SINE Alu 149 299 -13 2437 182 135 5 chr1 56478418 56479011 -225714653 + L1MC4 LINE L1 7097 7766 -276 368 149 27 0 chr1 56479030 56479104 -225714560 + CT-rich Low_complexity Low_complexity 5 80 0 790 45 27 0 chr1 56479107 56479217 -225714447 + (TTTC)n Simple_repeat Simple_repeat 2 114 0 1617 181 4 11 chr1 56479218 56479499 -225714165 - AluJb SINE Alu -33 279 1 1441 233 247 35 chr1 56479649 56480193 -225713471 - HAL1 LINE L1 -1679 828 108 1115 109 24 57 chr1 56480193 56480403 -225713261 + L1MA9 LINE L1 6110 6312 0 1441 233 247 35 chr1 56480403 56480541 -225713123 - HAL1 LINE L1 -2399 108 1 479 203 234 8 chr1 56481545 56481673 -225711991 + MIR SINE MIR 94 250 -12 404 182 80 0 chr1 56481791 56481879 -225711785 + MLT1H1 LTR MaLR 461 555 0 2362 95 16 0 chr1 56481924 56482229 -225711435 - AluY SINE Alu 0 311 2 345 268 24 0 chr1 56482293 56482375 -225711289 - MER69 DNA AcHobo -93 84 1 242 311 58 0 chr1 56483358 56483461 -225710203 - MIR SINE MIR -16 246 138 310 294 0 0 chr1 56483511 56483596 -225710068 + L2 LINE L2 3229 3313 0 253 218 7 56 chr1 56484589 56484704 -225708960 + MIR SINE MIR 92 198 -64 229 300 14 36 chr1 56485009 56485149 -225708515 + CT-rich Low_complexity Low_complexity 4 140 0 206 116 23 0 chr1 56486527 56486570 -225707094 + (TA)n Simple_repeat Simple_repeat 1 44 0 240 35 0 0 chr1 56487636 56487665 -225705999 + (CGG)n Simple_repeat Simple_repeat 1 29 0 273 208 0 0 chr1 56489957 56490034 -225703630 + (CCG)n Simple_repeat Simple_repeat 3 79 0 21 36 0 0 chr1 56492083 56492111 -225701553 + GC_rich Low_complexity Low_complexity 1 28 0 313 333 35 21 chr1 56496183 56496324 -225697340 - MIR3 SINE MIR -53 155 13 216 390 65 0 chr1 56496682 56496836 -225696828 - MIR SINE MIR -13 249 86 218 240 20 0 chr1 56497025 56497075 -225696589 - L2 LINE L2 0 3313 3263 753 269 187 12 chr1 56497377 56497933 -225695731 - L1ME4a LINE L1 -296 5825 5254 225 270 130 0 chr1 56498140 56498255 -225695409 - L1P LINE L1 -1131 5015 4886 538 307 116 51 chr1 56498292 56498856 -225694808 - L1ME4a LINE L1 -1308 4838 4234 333 0 0 0 chr1 56499397 56499434 -225694230 + (CA)n Simple_repeat Simple_repeat 2 38 0 263 307 30 10 chr1 56499903 56500004 -225693660 - MIR SINE MIR -101 161 59 495 242 40 0 chr1 56500341 56500465 -225693199 + MIR SINE MIR 134 262 0 301 161 49 0 chr1 56501183 56501252 -225692412 + MIR SINE MIR 94 146 -62 419 340 62 5 chr1 56501874 56502068 -225691596 + MIR SINE MIR 9 213 -49 190 300 69 77 chr1 56502108 56502238 -225691426 - L2 LINE L2 -112 3160 3032 761 263 82 8 chr1 56502238 56502481 -225691183 + MIR SINE MIR 1 261 -1 240 364 49 0 chr1 56502632 56502775 -225690889 - L2 LINE L2 -1152 2162 2013 526 279 52 0 chr1 56502885 56503039 -225690625 + MIR SINE MIR 23 184 -78 268 330 48 0 chr1 56503174 56503277 -225690387 - L2 LINE L2 -9 3263 3156 310 324 85 65 chr1 56503345 56503979 -225689685 - L2 LINE L2 -4 3268 2633 2399 97 3 0 chr1 56503979 56504279 -225689385 - AluSp SINE Alu -12 301 1 310 324 85 65 chr1 56504279 56504406 -225689258 - L2 LINE L2 -639 2633 2510 765 168 15 0 chr1 56504615 56504746 -225688918 + FLAM_C SINE Alu 1 133 0 588 292 83 0 chr1 56504816 56505032 -225688632 + MIR SINE MIR 23 256 -6 615 268 68 29 chr1 56505266 56505471 -225688193 - MIR SINE MIR -46 216 4 1400 167 0 75 chr1 56505885 56506178 -225687486 - AluJo SINE Alu -10 302 32 2560 87 0 0 chr1 56506247 56506556 -225687108 + AluSx SINE Alu 1 309 -3 232 288 45 0 chr1 56506601 56506667 -225686997 + MIR SINE MIR 54 122 -86 328 203 54 0 chr1 56506772 56506846 -225686818 - MIR SINE MIR -131 131 54 810 112 9 0 chr1 56707862 56707978 -225485686 + AluJb SINE Alu 194 310 -2 2024 126 144 12 chr1 56707978 56708223 -225485441 + L1MB7 LINE L1 5493 5704 -480 198 71 0 0 chr1 56708223 56708251 -225485413 + (TA)n Simple_repeat Simple_repeat 1 28 0 2024 126 144 12 chr1 56708251 56708427 -225485237 + L1MB7 LINE L1 5704 5970 -214 2170 209 12 23 chr1 56708455 56708971 -225484693 + L1ME1 LINE L1 5637 6146 -20 908 226 53 12 chr1 56709042 56709285 -225484379 - MER97a DNA MER1_type? -637 257 5 250 271 177 0 chr1 56709308 56709404 -225484260 - LTR16C LTR ERVL -378 113 1 248 272 101 70 chr1 56709460 56709787 -225483877 + L1MC4 LINE L1 7706 8042 0 489 292 45 6 chr1 56710130 56710308 -225483356 + MLT1K LTR MaLR 317 501 -87 1560 219 117 0 chr1 56710422 56710806 -225482858 + MLT1H1 LTR MaLR 127 555 0 2327 92 16 0 chr1 56710851 56711156 -225482508 - AluY SINE Alu 0 311 2 317 247 26 0 chr1 56711225 56711302 -225482362 - MER69 DNA AcHobo -2447 79 1 238 284 155 0 chr1 56712285 56712401 -225481263 - MIR SINE MIR -16 246 113 317 288 0 0 chr1 56712438 56712518 -225481146 + L2 LINE L2 3229 3308 -5 243 218 7 56 chr1 56713516 56713631 -225480033 + MIR SINE MIR 92 198 -64 218 312 14 23 chr1 56713936 56714076 -225479588 + CT-rich Low_complexity Low_complexity 3 213 0 206 116 23 0 chr1 56715453 56715496 -225478168 + (TA)n Simple_repeat Simple_repeat 1 44 0 1872 229 52 45 chr1 56716742 56716769 -225476895 - L1M4 LINE L1 -920 5226 5201 1858 105 112 7 chr1 56716769 56717045 -225476619 - AluSg SINE Alu -5 305 1 1872 229 52 45 chr1 56717045 56717543 -225476121 - L1M4 LINE L1 -945 5201 4692 2209 108 0 53 chr1 56717543 56717866 -225475798 + AluSx SINE Alu 1 306 -6 1872 229 52 45 chr1 56717866 56718025 -225475639 - L1M4 LINE L1 -1454 4692 4536 357 82 0 0 chr1 56718062 56718071 -225475593 + (TG)n Simple_repeat Simple_repeat 1 58 0 357 82 0 0 chr1 56718071 56718120 -225475544 + (TG)n Simple_repeat Simple_repeat 2 50 0 444 184 129 31 chr1 56718146 56718309 -225475355 - L1M4 LINE L1 -994 5152 4974 1141 274 38 40 chr1 56718320 56718823 -225474841 - L1M4 LINE L1 -1614 4532 4029 2331 107 0 7 chr1 56718823 56719133 -225474531 - AluSg1 SINE Alu -1 308 1 1141 274 38 40 chr1 56719133 56719210 -225474454 - L1M4 LINE L1 -2117 4029 3953 1430 227 106 9 chr1 56719298 56719761 -225473903 - L1ME1 LINE L1 -91 6075 5568 247 184 0 0 chr1 56720160 56720198 -225473466 + L2 LINE L2 3217 3254 -18 490 261 22 11 chr1 56720283 56720463 -225473201 + L1MC5 LINE L1 7744 7925 -36 562 176 49 7 chr1 56721639 56721781 -225471883 + L1MB7 LINE L1 6037 6184 0 1970 120 12 58 chr1 56722409 56722735 -225470929 - AluSx SINE Alu -1 311 1 685 114 0 0 chr1 56722746 56722851 -225470813 - AluSp/q SINE Alu 0 313 209 2287 122 3 0 chr1 56722981 56723284 -225470380 - AluSp SINE Alu -9 304 1 2118 134 0 0 chr1 56723474 56723773 -225469891 - AluSx SINE Alu -13 299 1 237 254 71 79 chr1 56724979 56725105 -225468559 + MIR SINE MIR 138 262 0 21 57 0 0 chr1 56725445 56725480 -225468184 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 56725572 56725609 -225468055 + AT_rich Low_complexity Low_complexity 1 37 0 188 269 15 75 chr1 56725839 56725906 -225467758 + MIR SINE MIR 16 78 -184 1928 148 3 10 chr1 56725942 56726240 -225467424 + AluJo SINE Alu 1 296 -16 1058 178 6 0 chr1 56726242 56726416 -225467248 + AluJb SINE Alu 132 306 -6 4932 216 66 16 chr1 56726574 56727774 -225465890 - L1 LINE L1 -808 5407 4124 2435 98 0 0 chr1 56727774 56728081 -225465583 + AluSx SINE Alu 1 307 -5 4932 216 66 16 chr1 56728081 56728298 -225465366 - L1 LINE L1 -2091 4124 3919 216 326 118 56 chr1 56728305 56728465 -225465199 + L2 LINE L2 2593 2778 -536 2101 115 13 13 chr1 56728465 56728769 -225464895 + AluSx SINE Alu 1 304 -8 216 326 118 56 chr1 56728769 56728878 -225464786 + L2 LINE L2 2778 2879 -435 461 258 10 0 chr1 56729052 56729149 -225464515 - L2 LINE L2 -4 3268 3171 21 36 0 0 chr1 56729234 56729262 -225464402 + AT_rich Low_complexity Low_complexity 1 28 0 202 182 0 0 chr1 56729266 56729299 -225464365 + MIR SINE MIR 220 252 -10 1905 166 34 0 chr1 56729740 56730035 -225463629 + AluSx SINE Alu 1 305 -7 411 287 52 0 chr1 56730076 56730191 -225463473 + L3 LINE CR1 1308 1428 -149 2157 108 0 20 chr1 56731105 56731411 -225462253 + AluSx SINE Alu 1 300 -12 255 174 0 0 chr1 56731493 56731539 -225462125 + L2 LINE L2 3267 3312 -1 2275 77 7 42 chr1 56731656 56731966 -225461698 + AluSq SINE Alu 1 299 -14 1978 62 0 8 chr1 56732082 56732323 -225461341 - AluY SINE Alu -19 292 54 2228 246 105 38 chr1 56732326 56732612 -225461052 - L1MEc LINE L1 -2635 3580 3315 2374 99 0 0 chr1 56732612 56732914 -225460750 - AluSc SINE Alu -7 302 1 2228 246 105 38 chr1 56732914 56733703 -225459961 - L1MEc LINE L1 -2900 3315 2581 2058 132 7 3 chr1 56733703 56734006 -225459658 + AluSq SINE Alu 1 304 -9 2228 246 105 38 chr1 56734006 56734151 -225459513 - L1MEc LINE L1 -3634 2581 2447 2302 110 0 0 chr1 56734151 56734460 -225459204 + AluSg SINE Alu 1 309 -1 2228 246 105 38 chr1 56734460 56734607 -225459057 - L1MEc LINE L1 -3768 2447 2311 2183 102 36 13 chr1 56734607 56734912 -225458752 - AluSx SINE Alu 0 312 1 2228 246 105 38 chr1 56734912 56735212 -225458452 - L1MEc LINE L1 -3904 2311 1848 1485 264 107 72 chr1 56735229 56735379 -225458285 - L1MEc LINE L1 -5247 1149 1006 2079 130 0 3 chr1 56735379 56735672 -225457992 - AluSx SINE Alu -16 296 5 1485 264 107 72 chr1 56735672 56736599 -225457065 - L1MEc LINE L1 -5390 1006 35 471 238 30 92 chr1 56737143 56737182 -225456482 - MIR SINE MIR -10 252 212 809 230 17 64 chr1 56737182 56737324 -225456340 - MER58A DNA MER1_type -2196 224 96 2229 92 6 19 chr1 56737324 56737640 -225456024 + AluSx SINE Alu 1 312 0 809 230 17 64 chr1 56737640 56737732 -225455932 - MER58A DNA MER1_type -2324 96 1 471 238 30 92 chr1 56737732 56737755 -225455909 - MIR SINE MIR -50 212 189 323 225 0 0 chr1 56737755 56737835 -225455829 + MER116 DNA Mariner 1 80 0 471 238 30 92 chr1 56737835 56737935 -225455729 - MIR SINE MIR -73 189 99 197 332 115 78 chr1 56738382 56738590 -225455074 + L2 LINE L2 3020 3240 -32 2584 128 16 38 chr1 56738590 56738628 -225455036 + MER57B LTR ERV1 1 38 -396 2002 152 0 10 chr1 56738628 56738931 -225454733 - AluSx SINE Alu -12 300 1 2584 128 16 38 chr1 56738931 56739336 -225454328 + MER57B LTR ERV1 38 434 0 197 332 115 78 chr1 56739336 56739371 -225454293 + L2 LINE L2 3240 3272 0 273 247 216 0 chr1 56739489 56739586 -225454078 - MIR SINE MIR -64 198 81 205 323 0 0 chr1 56739594 56739659 -225454005 + GA-rich Low_complexity Low_complexity 4 68 0 1309 115 6 0 chr1 56739759 56739941 -225453723 + AluSx SINE Alu 1 183 -129 354 291 77 38 chr1 56740800 56740966 -225452698 + MIR SINE MIR 39 207 -40 713 292 51 29 chr1 56741864 56742336 -225451328 + L1MC4 LINE L1 7312 7910 -132 33 90 0 0 chr1 56742403 56742492 -225451172 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr1 56742537 56742558 -225451106 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 56742583 56742604 -225451060 + AT_rich Low_complexity Low_complexity 1 21 0 36 40 0 0 chr1 56742783 56742833 -225450831 + AT_rich Low_complexity Low_complexity 1 50 0 1867 167 7 10 chr1 56743025 56743325 -225450339 - AluJb SINE Alu -13 299 1 24 32 0 0 chr1 56743554 56743585 -225450079 + AT_rich Low_complexity Low_complexity 1 31 0 706 120 0 9 chr1 56744655 56744763 -225448901 + U6 snRNA snRNA 1 107 0 186 43 0 0 chr1 56744767 56744790 -225448874 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 30 45 0 0 chr1 56745533 56745577 -225448087 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr1 56745642 56745665 -225447999 + AT_rich Low_complexity Low_complexity 1 23 0 220 111 37 19 chr1 56745976 56746030 -225447634 + A-rich Low_complexity Low_complexity 4 58 0 1056 166 18 69 chr1 56748097 56748314 -225445350 + AluJb SINE Alu 87 292 -20 188 158 53 0 chr1 56748363 56748401 -225445263 - MIR3 SINE MIR -8 200 161 203 239 45 45 chr1 56749925 56749992 -225443672 - L2 LINE L2 -7 3265 3199 270 273 27 55 chr1 56750018 56750128 -225443536 - L2 LINE L2 -150 3122 3016 199 310 35 0 chr1 56750195 56750253 -225443411 - L2 LINE L2 -9 3263 3204 1728 122 41 0 chr1 56750256 56750501 -225443163 + AluSq SINE Alu 1 255 -58 297 120 20 0 chr1 56750501 56750551 -225443113 - AluJo SINE Alu -166 136 86 780 236 10 0 chr1 56750560 56750763 -225442901 - L1M3c LINE L1 -4978 1163 959 1504 170 0 0 chr1 56752262 56752497 -225441167 + AluJb SINE Alu 64 298 -14 242 313 107 27 chr1 56753065 56753177 -225440487 + L2 LINE L2 3144 3264 -8 22 35 0 0 chr1 56753874 56753903 -225439761 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 56754910 56754939 -225438725 + AT_rich Low_complexity Low_complexity 1 29 0 850 195 31 15 chr1 56755825 56756020 -225437644 - Tigger7 DNA MER2_type 0 2487 2290 3584 166 40 14 chr1 56756028 56756729 -225436935 - Tigger7 DNA MER2_type -1768 719 1 1811 88 153 0 chr1 56756835 56757096 -225436568 + AluSg1 SINE Alu 1 301 -8 487 261 76 60 chr1 56757801 56757857 -225435807 - MIR SINE MIR -5 257 203 2346 76 7 0 chr1 56757857 56758148 -225435516 - AluSx SINE Alu -19 293 1 487 261 76 60 chr1 56758148 56758340 -225435324 - MIR SINE MIR -59 203 5 2257 108 3 13 chr1 56758456 56758763 -225434901 + AluSq SINE Alu 1 304 -9 577 275 127 0 chr1 56758826 56759015 -225434649 - MIR SINE MIR 0 262 50 213 204 0 0 chr1 56759784 56759828 -225433836 + (CA)n Simple_repeat Simple_repeat 2 45 0 572 275 131 8 chr1 56759837 56760081 -225433583 + L2 LINE L2 1699 1972 -1342 1232 215 106 71 chr1 56760092 56760544 -225433120 - L1ME3A LINE L1 -9 6161 5694 987 339 76 21 chr1 56760575 56761324 -225432340 + L2 LINE L2 2043 2832 -482 294 265 140 7 chr1 56761543 56761679 -225431985 + L2 LINE L2 3159 3312 -1 2398 83 7 0 chr1 56762726 56763027 -225430637 + AluSq SINE Alu 2 304 -9 218 274 20 40 chr1 56763322 56763461 -225430203 - MIR SINE MIR -45 217 85 1985 90 4 8 chr1 56763478 56763745 -225429919 + AluSg SINE Alu 1 266 -44 1882 154 3 0 chr1 56763848 56764140 -225429524 + Tigger1 DNA MER2_type 2126 2418 0 4237 159 31 40 chr1 56765401 56766172 -225427492 + MER54B LTR ERVL 1 764 -29 1089 84 28 0 chr1 56766172 56766315 -225427349 + AluSx SINE Alu 1 147 -166 27665 144 10 23 chr1 56766332 56767920 -225425744 + L1PA10 LINE L1 59 1665 -4844 2355 93 0 10 chr1 56767920 56768221 -225425443 + AluY SINE Alu 1 298 -13 27665 144 10 23 chr1 56768221 56773172 -225420492 + L1PA10 LINE L1 1665 6509 0 1094 110 27 0 chr1 56773213 56773359 -225420305 + AluSx SINE Alu 147 296 -14 2603 182 135 5 chr1 56773394 56773987 -225419677 + L1MC4 LINE L1 7097 7766 -276 391 112 10 51 chr1 56773988 56774086 -225419578 + (TTCC)n Simple_repeat Simple_repeat 1 94 0 862 42 25 0 chr1 56774087 56774205 -225419459 + (TTTC)n Simple_repeat Simple_repeat 2 122 0 1578 181 3 14 chr1 56774206 56774488 -225419176 - AluJb SINE Alu -33 279 1 800 231 209 35 chr1 56774634 56775180 -225418484 - HAL1 LINE L1 -1676 831 114 1201 115 24 48 chr1 56775180 56775388 -225418276 + L1MA9 LINE L1 6110 6312 0 800 231 209 35 chr1 56775388 56775526 -225418138 - HAL1 LINE L1 -2393 114 1 186 103 0 0 chr1 56775596 56775625 -225418039 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 299 306 7 62 chr1 56775832 56775976 -225417688 + L2 LINE L2 3137 3272 0 298 305 11 11 chr1 56777005 56777100 -225416564 + MIR SINE MIR 38 132 -76 233 289 13 0 chr1 56777189 56777265 -225416399 + MER103 DNA DNA 9 85 -81 218 276 184 20 chr1 56778736 56778834 -225414830 + L2 LINE L2 3159 3272 0 2026 98 0 72 chr1 56779242 56779549 -225414115 + AluSx SINE Alu 1 285 -27 964 24 16 8 chr1 56779549 56779676 -225413988 + (GGAA)n Simple_repeat Simple_repeat 3 130 0 242 140 0 20 chr1 56779878 56779928 -225413736 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 306 217 84 24 chr1 56780563 56780646 -225413018 + MER5B DNA MER1_type 1 88 -90 603 280 89 0 chr1 56781159 56781327 -225412337 + MIR SINE MIR 52 234 -28 195 42 0 0 chr1 56781495 56781519 -225412145 + (CACAC)n Simple_repeat Simple_repeat 5 28 0 282 203 125 0 chr1 56781814 56781878 -225411786 + MER116 DNA Mariner 1 72 -8 2278 116 0 0 chr1 56782195 56782496 -225411168 - AluSx SINE Alu -11 301 1 323 333 86 0 chr1 56782773 56782890 -225410774 + L2 LINE L2 3142 3268 -4 249 319 25 69 chr1 56783779 56783983 -225409681 + L2 LINE L2 3119 3313 0 5796 111 17 1 chr1 56784144 56785010 -225408654 - L1MA2 LINE L1 -6 6298 5419 22 0 0 0 chr1 56785151 56785173 -225408491 + AT_rich Low_complexity Low_complexity 1 22 0 349 249 24 77 chr1 56785482 56785651 -225408013 + L1MEd LINE L1 113 272 -5933 1977 146 14 0 chr1 56785774 56786068 -225407596 + AluSq SINE Alu 1 298 -15 1406 271 45 54 chr1 56786073 56786704 -225406960 + L1MEd LINE L1 1210 1836 -4560 2363 85 0 7 chr1 56786704 56787009 -225406655 - AluSg1 SINE Alu -4 305 3 1406 271 45 54 chr1 56787009 56787040 -225406624 + L1MEd LINE L1 1836 1866 -4530 2971 213 38 26 chr1 56787040 56787753 -225405911 + L1MB4 LINE L1 4603 5327 -819 2248 96 0 0 chr1 56787753 56788035 -225405629 + AluSx SINE Alu 23 304 -8 2971 213 38 26 chr1 56788035 56788087 -225405577 + L1MB4 LINE L1 5327 5377 -769 1660 175 54 0 chr1 56788084 56788399 -225405265 + L1MB4 LINE L1 5687 6018 -162 * 956 237 7 68 chr1 56788395 56788674 -225404990 - L1M4 LINE L1 -1998 4148 3887 * 601 247 24 0 chr1 56788702 56788872 -225404792 + L1M4 LINE L1 4144 4317 -1829 218 136 91 0 chr1 56788878 56788922 -225404742 + CT-rich Low_complexity Low_complexity 3 50 0 756 83 0 0 chr1 56788925 56789021 -225404643 - HY3 scRNA scRNA -5 96 1 659 218 51 32 chr1 56789021 56789237 -225404427 + L1M4 LINE L1 4326 4545 -1601 273 208 0 0 chr1 56791669 56791746 -225401918 + (CCG)n Simple_repeat Simple_repeat 3 79 0 21 36 0 0 chr1 56793795 56793823 -225399841 + GC_rich Low_complexity Low_complexity 1 28 0 289 333 35 21 chr1 56797895 56798036 -225395628 - MIR3 SINE MIR -53 155 13 207 240 20 0 chr1 56798737 56798787 -225394877 - L2 LINE L2 0 3313 3263 833 254 187 13 chr1 56799150 56799645 -225394019 - L1ME4a LINE L1 -296 5825 5254 240 270 130 0 chr1 56799852 56799967 -225393697 - L1P LINE L1 -1131 5015 4886 324 290 82 48 chr1 56800022 56800315 -225393349 - L1ME4a LINE L1 -1331 4815 4513 405 0 0 0 chr1 56801110 56801155 -225392509 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 261 43 0 chr1 56801656 56801725 -225391939 - MIR SINE MIR -132 130 59 461 242 40 0 chr1 56802062 56802186 -225391478 + MIR SINE MIR 134 262 0 296 157 49 0 chr1 56802904 56802973 -225390691 + MIR SINE MIR 94 146 -62 390 321 24 18 chr1 56803595 56803763 -225389901 + MIR SINE MIR 9 177 -85 742 248 92 0 chr1 56803959 56804177 -225389487 + MIR SINE MIR 1 238 -24 222 364 49 0 chr1 56804353 56804496 -225389168 - L2 LINE L2 -1152 2162 2013 501 279 52 0 chr1 56804606 56804760 -225388904 + MIR SINE MIR 23 184 -78 251 330 48 0 chr1 56804895 56804998 -225388666 - L2 LINE L2 -9 3263 3156 25 31 0 0 chr1 56805049 56805081 -225388583 + AT_rich Low_complexity Low_complexity 1 32 0 224 336 86 38 chr1 56805386 56805700 -225387964 - L2 LINE L2 -354 2960 2620 2427 92 3 0 chr1 56805700 56806004 -225387660 - AluSp SINE Alu -8 305 1 224 336 86 38 chr1 56806004 56806106 -225387558 - L2 LINE L2 -694 2620 2524 826 160 15 0 chr1 56806340 56806471 -225387193 + FLAM_C SINE Alu 1 133 0 578 279 63 9 chr1 56806549 56806771 -225386893 + MIR SINE MIR 23 256 -6 585 249 50 33 chr1 56807020 56807201 -225386463 - MIR SINE MIR -65 197 14 1372 167 0 75 chr1 56807624 56807917 -225385747 - AluJo SINE Alu -10 302 32 2530 87 0 0 chr1 56807986 56808295 -225385369 + AluSx SINE Alu 1 309 -3 225 274 48 0 chr1 56808344 56808406 -225385258 + MIR SINE MIR 58 122 -86 318 189 68 14 chr1 56808511 56808585 -225385079 - MIR SINE MIR -131 131 54 350 286 118 0 chr1 56811861 56811980 -225381684 - MIR SINE MIR -28 234 102 28 29 0 0 chr1 56812317 56812352 -225381312 + AT_rich Low_complexity Low_complexity 1 35 0 264 297 55 11 chr1 56812650 56812741 -225380923 + MIR SINE MIR 153 247 -15 186 279 139 12 chr1 56813558 56813644 -225380020 - MIR SINE MIR -57 151 55 234 280 409 0 chr1 56813653 56813785 -225379879 - MIR SINE MIR -6 256 71 652 295 83 12 chr1 56813789 56814030 -225379634 + MIR SINE MIR 5 262 0 475 281 56 112 chr1 56814475 56814813 -225378851 + L3 LINE CR1 1082 1400 -177 534 254 151 49 chr1 56814898 56815103 -225378561 - MIR SINE MIR -6 256 31 741 241 12 68 chr1 56815237 56815337 -225378327 - MIR SINE MIR -1 261 157 1273 116 20 0 chr1 56815337 56815535 -225378129 - L1PB2 LINE L1 -3 6148 5947 741 241 12 68 chr1 56815535 56815683 -225377981 - MIR SINE MIR -105 157 27 211 355 43 11 chr1 56815691 56815784 -225377880 + L3 LINE CR1 1476 1571 -6 471 309 0 88 chr1 56816324 56816541 -225377123 - MIR3 SINE MIR -8 200 3 1252 153 63 0 chr1 56816571 56816793 -225376871 + MER46A DNA MER2_type 1 236 0 373 247 93 0 chr1 56817119 56817216 -225376448 - MIR SINE MIR -62 146 41 2606 43 0 0 chr1 56817367 56817670 -225375994 - AluY SINE Alu -8 303 1 311 270 109 29 chr1 56818150 56818254 -225375410 + MIR SINE MIR 36 147 -61 257 222 150 60 chr1 56818524 56818670 -225374994 + MIR SINE MIR 35 205 -57 380 335 46 25 chr1 56819409 56819606 -225374058 - MIR SINE MIR -42 220 20 2427 101 0 0 chr1 56819725 56820033 -225373631 - AluSc SINE Alu -1 308 1 2259 121 3 0 chr1 56820158 56820456 -225373208 + AluSx SINE Alu 1 299 -13 619 297 43 5 chr1 56820457 56820677 -225372987 - MIR SINE MIR -8 254 28 25 0 0 0 chr1 56821051 56821076 -225372588 + AT_rich Low_complexity Low_complexity 1 25 0 207 242 30 0 chr1 56821432 56821498 -225372166 + GA-rich Low_complexity Low_complexity 1 68 0 885 231 124 4 chr1 56821560 56821794 -225371870 - MIR SINE MIR 0 262 1 315 268 152 9 chr1 56821958 56822070 -225371594 - MIR3 SINE MIR -19 189 62 253 265 98 88 chr1 56823041 56823143 -225370521 + MIR SINE MIR 49 151 -111 305 254 66 80 chr1 56824127 56824308 -225369356 + MIR3 SINE MIR 15 186 -56 536 317 34 34 chr1 56824419 56824687 -225368977 + L2 LINE L2 2814 3081 -191 312 295 115 36 chr1 56825053 56825192 -225368472 + L2 LINE L2 3121 3270 -2 471 343 35 0 chr1 56825850 56826019 -225367645 - MIR3 SINE MIR -1 207 33 1729 117 23 8 chr1 56826077 56826333 -225367331 + AluSx SINE Alu 36 295 -17 963 146 12 36 chr1 56826333 56826498 -225367166 - FAM SINE Alu -15 170 10 395 353 85 27 chr1 56826868 56827092 -225366572 - L2 LINE L2 0 3272 3036 307 214 0 0 chr1 56827246 56827302 -225366362 + MIR SINE MIR 89 144 -118 1484 143 140 57 chr1 56827851 56828130 -225365534 + AluJb SINE Alu 1 302 -10 2245 105 3 0 chr1 56828177 56828463 -225365201 + AluSp SINE Alu 1 287 -26 284 324 116 8 chr1 56828537 56828676 -225364988 + MIR SINE MIR 25 171 -62 709 273 120 9 chr1 56828983 56829199 -225364465 - MIR SINE MIR -1 261 22 2033 163 0 7 chr1 56829212 56829519 -225364145 - AluJb SINE Alu -7 305 1 387 339 58 45 chr1 56829705 56830012 -225363652 + L2 LINE L2 2377 2687 -627 259 329 86 13 chr1 56830012 56830164 -225363500 + MIR SINE MIR 1 163 -99 208 258 197 0 chr1 56830300 56830366 -225363298 + L2 LINE L2 3232 3310 -3 1405 146 0 12 chr1 56830554 56830801 -225362863 - MER82 DNA MER2_type -217 436 193 336 127 0 0 chr1 56830821 56830876 -225362788 + (TG)n Simple_repeat Simple_repeat 2 56 0 1541 183 43 0 chr1 56830888 56831048 -225362616 - AluJb SINE Alu -21 291 112 246 62 0 0 chr1 56831048 56831080 -225362584 + (TG)n Simple_repeat Simple_repeat 1 32 0 1541 183 43 0 chr1 56831080 56831198 -225362466 - AluJb SINE Alu -200 112 1 985 181 15 35 chr1 56831198 56831397 -225362267 - MER82 DNA MER2_type -458 195 1 291 374 19 0 chr1 56831709 56831816 -225361848 - L2 LINE L2 -8 3264 3156 269 147 64 0 chr1 56832238 56832347 -225361317 + (TA)n Simple_repeat Simple_repeat 1 116 0 768 192 7 0 chr1 56832351 56832497 -225361167 + MER68 LTR ERV1 381 527 -35 186 230 330 10 chr1 56832510 56832610 -225361054 - MIR SINE MIR -50 212 81 3020 177 43 4 chr1 56833174 56833711 -225359953 + MER68 LTR ERV1 5 562 0 466 330 99 9 chr1 56833736 56833957 -225359707 + MIR SINE MIR 16 256 -6 907 125 15 22 chr1 56834416 56834552 -225359112 - AluJo SINE Alu -177 135 1 309 278 57 0 chr1 56834553 56834667 -225358997 - MIR SINE MIR -67 141 73 407 333 48 16 chr1 56834947 56835136 -225358528 - MIR SINE MIR -34 228 34 326 284 53 11 chr1 56835371 56835466 -225358198 + MIR SINE MIR 53 151 -111 365 293 95 0 chr1 56835508 56835624 -225358040 + MIR SINE MIR 108 234 -28 2241 262 88 45 chr1 56835704 56836827 -225356837 - L2 LINE L2 0 3313 2136 266 111 0 0 chr1 56836826 56836862 -225356802 - L2 LINE L2 -17 3255 3220 * 2216 107 0 3 chr1 56837567 56837858 -225355806 - AluSc SINE Alu -19 290 1 508 252 67 15 chr1 56837925 56838060 -225355604 + MIR SINE MIR 6 147 -115 604 123 35 112 chr1 56838061 56838174 -225355490 + L1MA7 LINE L1 6129 6227 -64 1851 185 0 0 chr1 56838174 56838478 -225355186 + AluJb SINE Alu 3 306 0 604 123 35 112 chr1 56838478 56838533 -225355131 + L1MA7 LINE L1 6227 6285 -6 2095 122 0 17 chr1 56838548 56838705 -225354959 - AluSx SINE Alu -22 290 139 2383 87 0 3 chr1 56838705 56839004 -225354660 - AluSg SINE Alu -12 298 1 2095 122 0 17 chr1 56839004 56839141 -225354523 - AluSx SINE Alu -173 139 1 26 64 0 0 chr1 56839144 56839191 -225354473 + AT_rich Low_complexity Low_complexity 1 47 0 295 278 37 46 chr1 56839469 56839577 -225354087 + MIR SINE MIR 38 144 -64 516 338 62 27 chr1 56839680 56840050 -225353614 - L2 LINE L2 -416 2898 2516 303 338 62 31 chr1 56840572 56840732 -225352932 + MIR3 SINE MIR 42 206 -2 356 297 102 57 chr1 56840882 56841099 -225352565 - MIR SINE MIR -37 225 4 258 319 44 77 chr1 56841188 56841370 -225352294 + L2 LINE L2 3097 3272 0 254 390 0 0 chr1 56841483 56841565 -225352099 + L2 LINE L2 3153 3234 -38 260 294 7 44 chr1 56842131 56842267 -225351397 + GA-rich Low_complexity Low_complexity 5 135 0 510 17 0 0 chr1 56842610 56842669 -225350995 + (CA)n Simple_repeat Simple_repeat 2 60 0 194 242 76 30 chr1 56843321 56843387 -225350277 - L2 LINE L2 -7 3265 3197 22 70 0 0 chr1 56843552 56843595 -225350069 + AT_rich Low_complexity Low_complexity 1 43 0 1002 298 253 47 chr1 56844304 56844666 -225348998 - L3 LINE CR1 -124 1453 1167 658 63 32 0 chr1 56844666 56844761 -225348903 - L1PB1 LINE L1 -1 6150 6053 1002 298 253 47 chr1 56844761 56845349 -225348315 - L3 LINE CR1 -410 1167 307 586 158 115 6 chr1 56846381 56846534 -225347130 + L1MB4 LINE L1 6009 6178 0 299 246 29 0 chr1 56846572 56846641 -225347023 + MIR SINE MIR 32 102 -106 223 323 10 62 chr1 56847487 56847583 -225346081 + MIR SINE MIR 157 247 -15 342 291 0 0 chr1 56847613 56847699 -225345965 - MIR3 SINE MIR -12 196 111 309 224 134 45 chr1 56847965 56848099 -225345565 + L2 LINE L2 3168 3313 0 248 282 0 14 chr1 56848111 56848182 -225345482 + MIR SINE MIR 185 254 -8 2276 110 3 0 chr1 56848409 56848708 -225344956 - AluSx SINE Alu -12 300 1 643 110 46 0 chr1 56848883 56848992 -225344672 - L1MB4 LINE L1 -40 6140 6027 540 262 162 0 chr1 56849106 56849297 -225344367 - L1ME3A LINE L1 0 6170 5949 185 328 248 8 chr1 56849323 56849448 -225344216 + MIR SINE MIR 15 169 -93 1059 123 67 0 chr1 56849471 56849650 -225344014 - L1P3 LINE L1 -5682 193 3 589 258 0 31 chr1 56850717 56850876 -225342788 - L2 LINE L2 0 3313 3160 584 165 0 0 chr1 56850887 56850984 -225342680 + Tigger3b DNA MER2_type 6 102 -1129 * 4834 124 72 18 chr1 56850982 56851890 -225341774 + Tigger3b DNA MER2_type 274 1230 -1 533 264 157 50 chr1 56851890 56852208 -225341456 - L2 LINE L2 -157 3156 2805 3041 192 68 42 chr1 56852251 56853782 -225339882 - L1ME1 LINE L1 -8 6158 4590 1951 218 97 58 chr1 56853782 56854383 -225339281 - L2 LINE L2 -523 2791 2168 231 316 31 41 chr1 56854734 56854832 -225338832 + MIR SINE MIR 150 246 -16 203 255 0 0 chr1 56854833 56854880 -225338784 + (ATG)n Simple_repeat Simple_repeat 1 47 0 2176 31 0 0 chr1 56855106 56855362 -225338302 + L1PA5 LINE L1 5898 6153 -1 733 188 0 23 chr1 56855377 56855505 -225338159 - FLAM_A SINE Alu -8 125 1 219 184 0 158 chr1 56855535 56855585 -225338079 + MIR SINE MIR 119 155 -107 1491 138 160 88 chr1 56855585 56855626 -225338038 - MSTA LTR MaLR 0 428 391 2415 73 6 25 chr1 56855626 56855942 -225337722 + AluY SINE Alu 1 310 -1 1491 138 160 88 chr1 56855942 56856299 -225337365 - MSTA LTR MaLR -37 391 1 219 184 0 158 chr1 56856299 56856324 -225337340 + MIR SINE MIR 155 182 -80 186 103 0 0 chr1 56856678 56856707 -225336957 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 359 307 20 60 chr1 56856908 56857058 -225336606 + L2 LINE L2 3129 3272 0 333 305 11 11 chr1 56858087 56858182 -225335482 + MIR SINE MIR 38 132 -76 216 331 88 29 chr1 56858978 56859114 -225334550 + MIR SINE MIR 105 248 -14 253 276 184 20 chr1 56859818 56859916 -225333748 + L2 LINE L2 3159 3272 0 2000 98 0 72 chr1 56860323 56860630 -225333034 + AluSx SINE Alu 1 285 -27 1072 22 14 7 chr1 56860630 56860769 -225332895 + (GGAA)n Simple_repeat Simple_repeat 3 142 0 242 140 0 20 chr1 56860960 56861010 -225332654 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 211 308 53 45 chr1 56861512 56861645 -225332019 + L2 LINE L2 3161 3294 -19 333 217 84 24 chr1 56861645 56861728 -225331936 + MER5B DNA MER1_type 1 88 -90 666 281 95 0 chr1 56862209 56862409 -225331255 + MIR SINE MIR 14 234 -28 195 42 0 0 chr1 56862577 56862601 -225331063 + (CACAC)n Simple_repeat Simple_repeat 5 28 0 276 203 125 0 chr1 56862896 56862960 -225330704 + MER116 DNA Mariner 1 72 -8 2242 116 0 0 chr1 56863277 56863578 -225330086 - AluSx SINE Alu -11 301 1 388 342 59 20 chr1 56863770 56863972 -225329692 + L2 LINE L2 3100 3309 -4 309 319 25 69 chr1 56864861 56865065 -225328599 + L2 LINE L2 3119 3313 0 5651 110 17 1 chr1 56865226 56866092 -225327572 - L1MA2 LINE L1 -6 6298 5419 22 0 0 0 chr1 56866233 56866255 -225327409 + AT_rich Low_complexity Low_complexity 1 22 0 344 249 24 77 chr1 56866564 56866733 -225326931 + L1ME1 LINE L1 113 272 -5933 1955 144 14 0 chr1 56866858 56867150 -225326514 + AluSq SINE Alu 3 298 -15 1369 270 45 54 chr1 56867155 56867786 -225325878 + L1ME1 LINE L1 1210 1836 -4560 2330 85 0 7 chr1 56867786 56868091 -225325573 - AluSg1 SINE Alu -4 305 3 1369 270 45 54 chr1 56868091 56868122 -225325542 + L1ME1 LINE L1 1836 1866 -4530 2898 210 38 26 chr1 56868122 56868835 -225324829 + L1MB3 LINE L1 4603 5327 -819 2214 96 0 0 chr1 56868835 56869117 -225324547 + AluSx SINE Alu 23 304 -8 2898 210 38 26 chr1 56869117 56869169 -225324495 + L1MB3 LINE L1 5327 5377 -769 1618 178 57 0 chr1 56869166 56869481 -225324183 + L1MB3 LINE L1 5687 6019 -164 * 915 240 7 68 chr1 56869477 56869756 -225323908 - L1M4 LINE L1 -1998 4148 3887 * 584 247 24 0 chr1 56869784 56869954 -225323710 + L1ME1 LINE L1 4213 4386 -1829 218 136 91 0 chr1 56869960 56870004 -225323660 + CT-rich Low_complexity Low_complexity 3 50 0 740 83 0 0 chr1 56870007 56870103 -225323561 - HY3 scRNA scRNA -5 96 1 2722 203 61 34 chr1 56870103 56870952 -225322712 + L1ME1 LINE L1 4395 5266 -949 363 208 0 0 chr1 56870958 56871030 -225322634 + L1MA3 LINE L1 6233 6304 -1 2189 196 23 51 chr1 56871350 56871628 -225322036 + L1ME1 LINE L1 5273 5557 -678 2361 87 10 0 chr1 56871628 56871926 -225321738 + AluY SINE Alu 1 301 -10 2189 196 23 51 chr1 56871926 56872241 -225321423 + L1ME1 LINE L1 5557 5846 -389 1562 163 3 78 chr1 56873064 56873384 -225320280 - AluJo SINE Alu -16 296 1 402 247 0 0 chr1 56873466 56873555 -225320109 + L1MB5 LINE L1 6075 6163 -11 1601 169 30 20 chr1 56873584 56873879 -225319785 + AluJo SINE Alu 1 298 -14 1297 246 28 36 chr1 56873910 56874301 -225319363 + L1ME1 LINE L1 5841 6228 -7 799 269 20 17 chr1 56874310 56874604 -225319060 + L1MEd LINE L1 925 1219 -4900 771 237 36 12 chr1 56874619 56874868 -225318796 + L1MEd LINE L1 965 1219 -4900 477 238 134 43 chr1 56875083 56875247 -225318417 + MER5A DNA MER1_type 11 189 0 1150 223 0 18 chr1 56875821 56876041 -225317623 + MER58A DNA MER1_type 5 220 -4 421 331 101 47 chr1 56876524 56876911 -225316753 + L2 LINE L2 2806 3213 -59 205 239 75 15 chr1 56876937 56877004 -225316660 - MIR SINE MIR -16 246 176 1408 177 100 15 chr1 56877703 56877974 -225315690 + AluJo SINE Alu 2 295 -17 3893 159 49 32 chr1 56878174 56878946 -225314718 + L1MB5 LINE L1 5327 6114 -60 2200 112 3 10 chr1 56878946 56879249 -225314415 - AluSx SINE Alu -11 301 1 3893 159 49 32 chr1 56879249 56879302 -225314362 + L1MB5 LINE L1 6114 6165 -9 465 75 15 47 chr1 56879348 56879440 -225314224 + L1MB7 LINE L1 5745 5836 -325 1684 198 0 0 chr1 56879575 56879848 -225313816 + AluJb SINE Alu 1 273 -39 347 257 76 9 chr1 56879985 56880090 -225313574 + MIR SINE MIR 1 112 -150 2135 114 10 3 chr1 56880131 56880430 -225313234 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr1 56881461 56881491 -225312173 + AT_rich Low_complexity Low_complexity 1 30 0 6854 51 15 2 chr1 56881506 56883118 -225310546 - L1PA7 LINE L1 -6 6148 4516 1977 128 0 36 chr1 56883443 56883748 -225309916 + AluSx SINE Alu 1 294 -18 401 238 60 33 chr1 56883988 56884147 -225309517 - MIR SINE MIR -68 140 16 224 417 83 19 chr1 56884399 56884555 -225309109 + L2 LINE L2 3089 3254 -18 186 333 69 11 chr1 56885186 56885273 -225308391 + L2 LINE L2 2582 2673 -641 278 286 52 0 chr1 56885284 56885361 -225308303 - L2 LINE L2 -7 3265 3185 377 351 119 0 chr1 56885436 56885621 -225308043 - MIR SINE MIR -44 218 12 466 256 16 62 chr1 56885624 56885753 -225307911 - MER5A DNA MER1_type 0 189 67 890 248 110 5 chr1 56886221 56886439 -225307225 - MIR SINE MIR -10 252 12 393 243 68 19 chr1 56887563 56887666 -225305998 + MIR3 SINE MIR 74 181 -27 284 114 0 0 chr1 56887755 56887799 -225305865 - MIR SINE MIR -98 164 121 263 183 28 70 chr1 56887794 56887865 -225305799 + MER5A DNA MER1_type 99 166 -23 * 313 253 81 11 chr1 56887807 56887894 -225305770 - MER5A DNA MER1_type -91 98 6 351 217 65 0 chr1 56887974 56888066 -225305598 + MIR SINE MIR 76 173 -89 2036 238 48 51 chr1 56888223 56888681 -225304983 - L1ME1 LINE L1 -23 6143 5686 2446 79 0 0 chr1 56888681 56888985 -225304679 - AluY SINE Alu -7 304 1 2036 238 48 51 chr1 56888985 56889169 -225304495 - L1ME1 LINE L1 -480 5686 5503 2068 98 11 0 chr1 56889295 56889572 -225304092 + AluSg SINE Alu 1 280 -30 998 118 6 0 chr1 56889574 56889735 -225303929 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 181 338 40 14 chr1 56890227 56890301 -225303363 + L2 LINE L2 3194 3269 -3 1960 126 10 3 chr1 56890810 56891104 -225302560 + AluJb SINE Alu 1 296 -16 665 157 67 0 chr1 56891292 56891426 -225302238 - L1MA8 LINE L1 -5 6286 6144 497 277 76 38 chr1 56892538 56892722 -225300942 + MIR SINE MIR 46 236 -26 4234 175 32 27 chr1 56892993 56893983 -225299681 - L1MB4 LINE L1 0 6180 5183 * 4996 125 19 13 chr1 56893964 56895138 -225298526 - L1PA13 LINE L1 -335 5828 4655 2174 126 0 0 chr1 56895138 56895431 -225298233 - AluSx SINE Alu -19 293 1 4996 125 19 13 chr1 56895431 56895598 -225298066 - L1PA13 LINE L1 -1508 4655 4490 1731 220 36 13 chr1 56895596 56896046 -225297618 - L1MB4 LINE L1 -1786 4360 3901 * 568 183 104 9 chr1 56896413 56896528 -225297136 - FLAM_C SINE Alu -17 126 1 23 0 0 0 chr1 56896533 56896556 -225297108 + AT_rich Low_complexity Low_complexity 1 23 0 948 118 0 0 chr1 56896559 56896686 -225296978 + FLAM_C SINE Alu 1 127 -16 24 0 0 0 chr1 56896686 56896710 -225296954 + AT_rich Low_complexity Low_complexity 1 24 0 695 194 0 22 chr1 56896710 56896849 -225296815 - AluJo SINE Alu -176 136 1 2449 174 12 25 chr1 56896849 56897104 -225296560 - L1M4 LINE L1 -444 5734 5477 2030 128 7 7 chr1 56897104 56897401 -225296263 - AluSx SINE Alu -15 297 1 2449 174 12 25 chr1 56897401 56897721 -225295943 - L1M4 LINE L1 -701 5477 5171 663 48 0 0 chr1 56898057 56898140 -225295524 + (TC)n Simple_repeat Simple_repeat 2 84 0 1805 134 36 18 chr1 56898140 56898417 -225295247 - AluJb SINE Alu -30 282 1 421 179 0 0 chr1 56898902 56898969 -225294695 + Tigger2 DNA MER2_type 1 67 -2651 * 2481 158 39 5 chr1 56898961 56899392 -225294272 + Tigger2 DNA MER2_type 2273 2718 0 440 276 10 0 chr1 56900030 56900128 -225293536 + L2 LINE L2 3215 3313 0 519 113 0 0 chr1 56900488 56900568 -225293096 + (TG)n Simple_repeat Simple_repeat 2 81 0 2727 13 0 0 chr1 56900569 56900867 -225292797 - AluYa5 SINE Alu -13 298 1 2476 65 36 0 chr1 56901011 56901348 -225292316 + L1MA1 LINE L1 5953 6301 -1 22 0 0 0 chr1 56903340 56903362 -225290302 + AT_rich Low_complexity Low_complexity 1 22 0 1869 162 0 19 chr1 56903362 56903676 -225289988 - AluJo SINE Alu -4 308 1 298 254 0 0 chr1 56903685 56903744 -225289920 - AluJb SINE Alu -23 279 221 1290 115 16 6 chr1 56903744 56903927 -225289737 - AluJb SINE Alu -124 188 4 277 346 50 10 chr1 56904008 56904109 -225289555 - L2 LINE L2 0 3272 3168 333 238 38 12 chr1 56904465 56904545 -225289119 + MIR SINE MIR 73 154 -108 281 293 170 0 chr1 56904617 56904723 -225288941 + LTR33A LTR ERVL 72 195 -328 538 251 59 79 chr1 56904768 56904852 -225288812 + LTR33 LTR ERVL 323 407 -114 1980 124 25 7 chr1 56904852 56905134 -225288530 - AluSg SINE Alu -23 287 1 538 251 59 79 chr1 56905134 56905252 -225288412 + LTR33 LTR ERVL 407 521 0 338 278 52 0 chr1 56905254 56905351 -225288313 + MIR SINE MIR 161 262 0 448 259 90 67 chr1 56906342 56906599 -225287065 - MIR SINE MIR -2 260 2 216 97 0 0 chr1 56907342 56907373 -225286291 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 574 168 168 0 chr1 56907541 56907648 -225286016 - FLAM_A SINE Alu -4 129 5 3401 138 58 23 chr1 56907989 56908677 -225284987 - Charlie1a DNA MER1_type 0 1455 744 2096 194 80 50 chr1 56908687 56909223 -225284441 - Charlie1a DNA MER1_type -902 553 2 2194 109 0 10 chr1 56910527 56910831 -225282833 - AluSg1 SINE Alu -7 302 2 213 171 29 14 chr1 56912284 56912354 -225281310 + GA-rich Low_complexity Low_complexity 2 72 0 318 286 45 45 chr1 56914024 56914157 -225279507 + MIR SINE MIR 127 259 -3 866 181 125 87 chr1 56914480 56914768 -225278896 - MSTB2 LTR MaLR -144 313 15 326 289 46 72 chr1 56914852 56915046 -225278618 - MER5A DNA MER1_type 0 189 1 380 270 0 30 chr1 56915087 56915187 -225278477 + MARNA DNA Mariner 398 494 -92 699 332 5 5 chr1 56915303 56915526 -225278138 - L2 LINE L2 -227 3086 2864 2061 108 22 7 chr1 56915850 56916127 -225277537 - AluSx SINE Alu -27 285 5 201 74 0 0 chr1 56916144 56916171 -225277493 + (A)n Simple_repeat Simple_repeat 1 27 0 764 234 156 64 chr1 56916171 56916443 -225277221 + L1MC4a LINE L1 5443 5689 -2119 1723 167 7 17 chr1 56916443 56916730 -225276934 + AluJo SINE Alu 3 286 -26 764 234 156 64 chr1 56916730 56916923 -225276741 + L1MC4a LINE L1 5689 5962 -1846 2260 113 0 0 chr1 56916923 56917224 -225276440 - AluSg SINE Alu -9 301 1 764 234 156 64 chr1 56917224 56917271 -225276393 + L1MC4a LINE L1 5962 6003 -1805 1437 168 4 20 chr1 56917501 56917751 -225275913 - AluJb SINE Alu -64 248 3 2345 78 3 3 chr1 56917978 56918273 -225275391 - AluSp SINE Alu -17 296 2 328 247 78 0 chr1 56918526 56918603 -225275061 - L3 LINE CR1 -6 1571 1489 442 245 214 0 chr1 56919368 56919527 -225274137 + MIR SINE MIR 2 194 -68 1552 143 49 58 chr1 56919858 56920058 -225273606 - AluJo SINE Alu -7 305 108 2146 112 10 0 chr1 56920058 56920361 -225273303 + AluSg SINE Alu 1 306 -4 1552 143 49 58 chr1 56920361 56920468 -225273196 - AluJo SINE Alu -204 108 1 2419 75 3 3 chr1 56920630 56920937 -225272727 + AluY SINE Alu 1 307 -4 24 32 0 0 chr1 56921275 56921306 -225272358 + AT_rich Low_complexity Low_complexity 1 31 0 579 317 176 18 chr1 56922042 56922440 -225271224 + L3 LINE CR1 208 668 -909 399 274 104 78 chr1 56922466 56922573 -225271091 - MIR SINE MIR -17 245 142 2226 116 0 7 chr1 56922573 56922875 -225270789 + AluSx SINE Alu 1 300 -12 399 274 104 78 chr1 56922875 56922997 -225270667 - MIR SINE MIR -120 142 10 195 306 14 76 chr1 56923047 56923191 -225270473 - L2 LINE L2 -65 3248 3114 721 333 127 39 chr1 56923275 56923920 -225269744 - L2 LINE L2 -1889 1425 724 366 262 19 28 chr1 56924031 56924138 -225269526 + L3 LINE CR1 846 951 -626 561 333 67 37 chr1 56924222 56924624 -225269040 + L3 LINE CR1 1157 1570 -7 358 222 35 123 chr1 56924834 56924925 -225268739 + MIR SINE MIR 106 203 -59 207 0 0 0 chr1 56924925 56924948 -225268716 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chr1 56924947 56924975 -225268689 + (GA)n Simple_repeat Simple_repeat 2 29 0 358 222 35 123 chr1 56924948 56925054 -225268610 + MIR SINE MIR 203 261 -1 1242 119 33 38 chr1 56925563 56925773 -225267891 + AluJb SINE Alu 66 274 -38 228 200 0 0 chr1 56925773 56925853 -225267811 + (CA)n Simple_repeat Simple_repeat 2 81 0 4598 102 66 118 chr1 56925877 56926613 -225267051 + L1PB3 LINE L1 5155 5858 -296 1690 48 0 10 chr1 56926613 56926822 -225266842 + AluY SINE Alu 101 307 -4 4598 102 66 118 chr1 56926822 56927105 -225266559 + L1PB3 LINE L1 5858 6154 0 1811 167 0 7 chr1 56927112 56927455 -225266209 + AluJb SINE Alu 1 341 0 1766 146 52 0 chr1 56928466 56928757 -225264907 - AluSx SINE Alu 0 305 1 2169 118 0 0 chr1 56929527 56929823 -225263841 + AluSx SINE Alu 1 296 -16 2140 101 4 0 chr1 56932106 56932384 -225261280 + AluSg SINE Alu 1 279 -31 453 62 0 0 chr1 56932393 56932458 -225261206 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 321 326 68 41 chr1 56933232 56933379 -225260285 + L2 LINE L2 3121 3271 -1 2017 123 43 0 chr1 56933415 56933717 -225259947 - MER2 DNA MER2_type -10 335 21 936 150 36 24 chr1 56933837 56934004 -225259660 + FRAM SINE Alu 1 163 -13 715 112 0 63 chr1 56935542 56935685 -225257979 - L1PA14 LINE L1 -3 6158 6025 448 281 87 42 chr1 56939101 56939322 -225254342 - MIR SINE MIR -21 241 19 362 247 22 11 chr1 56939513 56939602 -225254062 - L2 LINE L2 0 3272 3183 410 319 123 20 chr1 56939695 56939899 -225253765 + L2 LINE L2 2986 3210 -62 247 268 20 18 chr1 56941907 56942056 -225251608 + MIR SINE MIR 44 260 -2 203 176 0 0 chr1 56942343 56942377 -225251287 - MIR3 SINE MIR -3 205 172 611 246 117 11 chr1 56942729 56943010 -225250654 - L1MC4 LINE L1 -43 7999 7689 375 262 31 0 chr1 56943157 56943254 -225250410 + MIR SINE MIR 16 120 -92 753 118 0 0 chr1 56943433 56943535 -225250129 - FLAM_C SINE Alu -18 125 24 2199 103 27 0 chr1 56943658 56943958 -225249706 - AluSq SINE Alu -5 308 1 186 71 0 0 chr1 56944372 56944400 -225249264 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1998 129 11 3 chr1 56944410 56944696 -225248968 + AluSx SINE Alu 6 293 -19 31 26 0 0 chr1 56945259 56945297 -225248367 + AT_rich Low_complexity Low_complexity 1 38 0 2694 48 0 0 chr1 56945458 56945767 -225247897 - AluY SINE Alu -2 309 1 22 70 0 0 chr1 56946141 56946184 -225247480 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr1 56946513 56946540 -225247124 + AT_rich Low_complexity Low_complexity 1 27 0 239 356 10 0 chr1 56946601 56946702 -225246962 + MARNA DNA Mariner 155 256 -330 347 292 91 19 chr1 56946729 56946883 -225246781 - MIR SINE MIR -41 221 57 1508 180 0 79 chr1 56947221 56947526 -225246138 - AluJb SINE Alu -31 281 1 198 319 137 87 chr1 56947573 56947802 -225245862 + L2 LINE L2 2804 3059 -213 2288 109 0 0 chr1 56947802 56948114 -225245550 + AluSx SINE Alu 1 312 0 198 319 137 87 chr1 56948114 56948241 -225245423 + L2 LINE L2 3059 3178 -94 576 123 0 0 chr1 56948496 56948577 -225245087 - AluS SINE Alu -232 81 1 1116 111 7 0 chr1 56949577 56949730 -225243934 - AluSq SINE Alu -10 303 150 1540 104 5 0 chr1 56949730 56949931 -225243733 - AluSq SINE Alu -111 202 1 2171 87 3 45 chr1 56950659 56950970 -225242694 + AluSx SINE Alu 1 298 -14 2094 124 0 0 chr1 56951210 56951531 -225242133 + AluSx SINE Alu 1 321 0 1777 189 0 3 chr1 56951540 56951836 -225241828 + AluJb SINE Alu 3 297 -15 717 236 32 0 chr1 56952025 56952182 -225241482 + AluJb SINE Alu 137 298 -14 269 219 41 7 chr1 56953851 56953997 -225239667 + GA-rich Low_complexity Low_complexity 4 154 0 2112 114 24 0 chr1 56955102 56955399 -225238265 - AluSg SINE Alu -6 304 1 1950 214 52 48 chr1 56957043 56957163 -225236501 + Charlie1a DNA MER1_type 3 121 -2640 2158 123 3 0 chr1 56957163 56957463 -225236201 - AluSx SINE Alu -11 301 1 1950 214 52 48 chr1 56957463 56957879 -225235785 + Charlie1a DNA MER1_type 121 541 -914 1135 158 115 19 chr1 56957882 56958091 -225235573 - MER46A DNA MER2_type -7 229 1 3748 157 39 103 chr1 56958115 56959088 -225234576 + Charlie1a DNA MER1_type 545 1455 0 1867 112 32 28 chr1 56959443 56959728 -225233936 + AluSq SINE Alu 1 286 -27 186 103 0 0 chr1 56959730 56959759 -225233905 + (TA)n Simple_repeat Simple_repeat 2 30 0 326 286 0 22 chr1 56959770 56959861 -225233803 - L1MC4 LINE L1 -1340 6702 6614 291 325 68 17 chr1 56959997 56960114 -225233550 + MIR3 SINE MIR 76 198 -10 243 294 12 0 chr1 56960421 56960506 -225233158 + L1ME2 LINE L1 6078 6325 -9 2230 117 3 0 chr1 56960553 56960851 -225232813 - AluSx SINE Alu -13 299 1 697 309 27 0 chr1 56960921 56961141 -225232523 - MIR SINE MIR -1 261 36 248 333 122 0 chr1 56961285 56961432 -225232232 - MIR SINE MIR -49 213 49 390 322 59 0 chr1 56962426 56962544 -225231120 - MIR3 SINE MIR -53 155 31 1582 156 37 83 chr1 56962548 56962874 -225230790 - AluJb SINE Alu -1 311 1 308 306 66 16 chr1 56963951 56964072 -225229592 + MIR SINE MIR 25 151 -111 2557 68 0 3 chr1 56964539 56964850 -225228814 - AluSp SINE Alu -3 310 1 396 322 95 0 chr1 56965313 56965467 -225228197 + MIR3 SINE MIR 20 187 -21 3040 154 2 6 chr1 56965931 56966419 -225227245 - MER66B LTR ERV1 0 486 1 538 260 87 12 chr1 56966818 56966991 -225226673 + MIR SINE MIR 8 193 -69 287 291 0 47 chr1 56967111 56967197 -225226467 - L2 LINE L2 0 3272 3191 1680 180 21 11 chr1 56967445 56967728 -225225936 - AluJo SINE Alu -23 289 4 21 82 0 0 chr1 56971624 56971673 -225221991 + AT_rich Low_complexity Low_complexity 1 49 0 223 151 0 38 chr1 56971840 56971866 -225221798 + (CAAA)n Simple_repeat Simple_repeat 2 27 -25 2228 121 0 0 chr1 56971866 56972163 -225221501 + AluSc SINE Alu 1 297 -12 223 151 0 38 chr1 56972163 56972189 -225221475 + (CAAA)n Simple_repeat Simple_repeat 27 52 0 2396 93 3 0 chr1 56972607 56972909 -225220755 + AluSp SINE Alu 1 303 -10 10002 203 96 49 chr1 56972967 56974731 -225218933 - L1PA16 LINE L1 -3 7601 5921 2246 131 0 0 chr1 56974731 56975028 -225218636 - AluSx SINE Alu -13 299 3 10002 203 96 49 chr1 56975028 56976479 -225217185 - L1PA16 LINE L1 -1683 5921 4540 1058 75 0 0 chr1 56976479 56976612 -225217052 - AluSq/x SINE Alu -180 133 1 10002 203 96 49 chr1 56976612 56976802 -225216862 - L1PA16 LINE L1 -3064 4540 4360 2168 112 0 26 chr1 56976802 56977106 -225216558 - AluSx SINE Alu -16 296 1 10002 203 96 49 chr1 56977106 56977959 -225215705 - L1PA16 LINE L1 -3244 4360 3549 2413 94 0 0 chr1 56977959 56978256 -225215408 - AluSg SINE Alu -13 297 1 10002 203 96 49 chr1 56978256 56978713 -225214951 - L1PA16 LINE L1 -4055 3549 2478 304 282 9 9 chr1 56978726 56978836 -225214828 - L1PA16 LINE L1 -5237 2344 2235 287 312 0 0 chr1 56979103 56979196 -225214468 - L1PA16 LINE L1 -5402 2179 2087 2194 119 6 6 chr1 56979437 56979749 -225213915 - AluSx SINE Alu 0 312 1 653 351 31 52 chr1 56979779 56979933 -225213731 - L1PA16 LINE L1 -6316 1258 1102 2387 97 3 0 chr1 56979933 56980244 -225213420 + AluSx SINE Alu 1 312 0 653 351 31 52 chr1 56980244 56980568 -225213096 - L1PA16 LINE L1 -6472 1102 790 2139 116 3 25 chr1 56981335 56981654 -225212010 + AluSx SINE Alu 1 312 0 1906 153 16 3 chr1 56981709 56982080 -225211584 + AluJb SINE Alu 1 375 0 189 0 0 0 chr1 57032214 57032235 -225161429 + (A)n Simple_repeat Simple_repeat 1 21 0 2256 95 10 0 chr1 57032546 57032842 -225160822 - AluSp SINE Alu -14 299 1 2230 117 0 7 chr1 57032949 57033248 -225160416 - AluSx SINE Alu -15 297 1 694 144 0 0 chr1 57033440 57033544 -225160120 - AluSc SINE Alu -9 300 197 925 109 15 0 chr1 57033544 57033681 -225159983 - AluY SINE Alu -172 139 1 527 263 0 25 chr1 57034035 57034153 -225159511 - AluJb SINE Alu -78 234 120 210 341 47 0 chr1 57035182 57035267 -225158397 + MIR SINE MIR 31 119 -143 260 242 16 0 chr1 57035268 57035330 -225158334 - L2 LINE L2 0 3313 3251 2340 78 0 7 chr1 57035406 57035699 -225157965 - AluSc SINE Alu -18 291 1 2182 121 3 0 chr1 57035707 57036004 -225157660 - AluSg SINE Alu -12 298 1 2386 96 10 0 chr1 57036260 57036561 -225157103 - AluSg SINE Alu -6 304 1 317 189 349 0 chr1 57036703 57036809 -225156855 - MIR SINE MIR 0 262 120 2103 136 0 0 chr1 57037171 57037466 -225156198 + AluSx SINE Alu 2 296 -16 1876 142 20 0 chr1 57037680 57037975 -225155689 + AluJb SINE Alu 5 305 -7 929 106 0 33 chr1 57038066 57038217 -225155447 - AluSg/x SINE Alu -10 300 155 4760 220 16 35 chr1 57038317 57039035 -225154629 - L1PA15-16 LINE L1 -3953 3631 2942 2190 128 0 0 chr1 57039035 57039332 -225154332 - AluSg SINE Alu -13 297 1 4760 220 16 35 chr1 57039332 57039789 -225153875 - L1PA15-16 LINE L1 -4642 2942 2478 342 282 9 9 chr1 57039802 57039912 -225153752 - L1PA15-16 LINE L1 -5237 2344 2235 315 312 0 0 chr1 57040179 57040272 -225153392 - L1PA15-16 LINE L1 -5402 2179 2087 2083 132 10 6 chr1 57040513 57040824 -225152840 - AluSx SINE Alu 0 312 1 1931 85 0 0 chr1 57041122 57041358 -225152306 - AluSq SINE Alu -76 237 2 1072 179 0 43 chr1 57041359 57041566 -225152098 + AluJo SINE Alu 103 300 -12 477 50 0 0 chr1 57041581 57041641 -225152023 + (CA)n Simple_repeat Simple_repeat 2 61 0 242 273 91 11 chr1 57042561 57042649 -225151015 - MIR SINE MIR -84 124 30 2145 128 0 0 chr1 57042776 57043066 -225150598 - AluSx SINE Alu -22 290 1 2064 117 0 14 chr1 57043283 57043574 -225150090 + AluSg SINE Alu 1 287 -23 1119 68 0 0 chr1 57043726 57043859 -225149805 + AluY SINE Alu 1 133 -178 2441 92 0 0 chr1 57043859 57044164 -225149500 + AluY SINE Alu 1 305 -6 632 306 68 65 chr1 57044340 57044723 -225148941 + L2 LINE L2 2925 3308 -5 1017 331 70 22 chr1 57044773 57044928 -225148736 - L2 LINE L2 -4 3309 3163 2004 153 36 127 chr1 57044928 57045426 -225148238 + MLT2A2 LTR ERVL 1 453 0 1017 331 70 22 chr1 57045426 57045820 -225147844 - L2 LINE L2 -150 3163 2740 895 103 26 0 chr1 57045820 57045936 -225147728 + AluSc SINE Alu 1 119 -190 23 33 0 0 chr1 57046076 57046106 -225147558 + AT_rich Low_complexity Low_complexity 1 30 0 940 195 31 15 chr1 57046992 57047187 -225146477 - Tigger7 DNA MER2_type 0 2487 2290 3891 166 40 14 chr1 57047195 57047896 -225145768 - Tigger7 DNA MER2_type -1768 719 1 1696 104 154 0 chr1 57048002 57048261 -225145403 + AluSg1 SINE Alu 1 299 -10 2328 76 7 0 chr1 57049022 57049313 -225144351 - AluSx SINE Alu -19 293 1 2090 203 47 6 chr1 57049313 57049785 -225143879 - L1M2 LINE L1 -4031 2818 2328 1061 253 65 30 chr1 57050008 57050379 -225143285 - L1M4 LINE L1 -1082 5064 4681 1834 151 3 60 chr1 57050380 57050711 -225142953 + AluSx SINE Alu 1 312 0 1943 107 19 55 chr1 57050713 57051023 -225142641 + AluSq SINE Alu 1 299 -14 2407 107 0 0 chr1 57051185 57051495 -225142169 + AluSq SINE Alu 1 310 -3 21 82 0 0 chr1 57053107 57053156 -225140508 + AT_rich Low_complexity Low_complexity 1 49 0 223 151 0 38 chr1 57053323 57053349 -225140315 + (CAAA)n Simple_repeat Simple_repeat 2 27 -25 2219 121 0 0 chr1 57053349 57053646 -225140018 + AluSc SINE Alu 1 297 -12 223 151 0 38 chr1 57053646 57053672 -225139992 + (CAAA)n Simple_repeat Simple_repeat 27 52 0 2395 93 3 0 chr1 57054090 57054392 -225139272 + AluSp SINE Alu 1 303 -10 23 0 0 0 chr1 57054439 57054462 -225139202 + AT_rich Low_complexity Low_complexity 1 23 0 2751 264 69 35 chr1 57054755 57055017 -225138647 - L1M4 LINE L1 -2358 3788 3536 2055 57 0 8 chr1 57055017 57055262 -225138402 - AluY SINE Alu -15 296 54 2751 264 69 35 chr1 57055262 57055551 -225138113 - L1M4 LINE L1 -2610 3536 3258 2412 93 0 0 chr1 57055551 57055853 -225137811 - AluSc SINE Alu -7 302 1 2751 264 69 35 chr1 57055853 57056642 -225137022 - L1M4 LINE L1 -2888 3258 2360 2126 129 3 3 chr1 57056642 57056951 -225136713 + AluSq SINE Alu 1 309 -4 2751 264 69 35 chr1 57056951 57056968 -225136696 - L1M4 LINE L1 -3786 2360 2345 21 0 0 0 chr1 57057032 57057053 -225136611 + AT_rich Low_complexity Low_complexity 1 21 0 2083 113 3 3 chr1 57057056 57057338 -225136326 + AluSq SINE Alu 1 282 -31 188 188 0 0 chr1 57057404 57057436 -225136228 - MIR SINE MIR -229 33 2 584 254 85 62 chr1 57057654 57057926 -225135738 + L1ME LINE L1 5383 5660 -461 2387 92 3 3 chr1 57058130 57058435 -225135229 + AluSp SINE Alu 1 305 -8 597 288 15 3 chr1 57060289 57060465 -225133199 + MIR SINE MIR 3 185 -23 196 282 105 65 chr1 57061151 57061275 -225132389 + L2 LINE L2 3137 3265 -7 1514 118 5 5 chr1 57061464 57061676 -225131988 + AluSg/x SINE Alu 89 300 -12 258 174 0 0 chr1 57061758 57061804 -225131860 + L2 LINE L2 3267 3312 -1 2154 90 7 42 chr1 57061921 57062231 -225131433 + AluSq SINE Alu 1 299 -14 2164 132 3 0 chr1 57062394 57062697 -225130967 - AluSp SINE Alu -9 304 1 2032 134 3 0 chr1 57062887 57063185 -225130479 - AluSx SINE Alu -13 299 1 542 146 0 0 chr1 57064243 57064325 -225129339 + AluJb SINE Alu 208 289 -23 286 291 0 47 chr1 57064573 57064659 -225129005 + L2 LINE L2 3191 3272 0 534 260 87 12 chr1 57064779 57064952 -225128712 - MIR SINE MIR -69 193 8 3031 154 2 6 chr1 57065351 57065839 -225127825 + MER66B LTR ERV1 1 486 0 396 322 95 0 chr1 57066303 57066457 -225127207 - MIR3 SINE MIR -21 187 20 2545 68 0 3 chr1 57066920 57067231 -225126433 + AluSp SINE Alu 1 310 -3 304 306 66 16 chr1 57067698 57067819 -225125845 - MIR SINE MIR -111 151 25 1549 156 37 83 chr1 57068896 57069222 -225124442 + AluJb SINE Alu 1 311 -1 388 322 59 0 chr1 57069226 57069344 -225124320 + MIR3 SINE MIR 31 155 -53 250 333 122 0 chr1 57070338 57070485 -225123179 + MIR SINE MIR 49 213 -49 697 309 27 0 chr1 57070629 57070849 -225122815 + MIR SINE MIR 36 261 -1 2205 117 3 0 chr1 57070919 57071217 -225122447 + AluSx SINE Alu 1 299 -13 277 268 0 48 chr1 57071265 57071369 -225122295 - L1MA10 LINE L1 -8 6304 6209 291 325 68 17 chr1 57071658 57071775 -225121889 - MIR3 SINE MIR -10 198 76 326 286 0 22 chr1 57072026 57072117 -225121547 + L1MC4 LINE L1 6614 6702 -1340 186 103 0 0 chr1 57072128 57072157 -225121507 + (TA)n Simple_repeat Simple_repeat 1 29 0 1867 112 32 28 chr1 57072159 57072444 -225121220 - AluSq SINE Alu -27 286 1 2334 159 68 19 chr1 57072799 57073283 -225120381 - Charlie1a DNA MER1_type 0 1455 948 25 0 0 0 chr1 57073284 57073309 -225120355 + AT_rich Low_complexity Low_complexity 1 25 0 1824 190 14 36 chr1 57073354 57073770 -225119894 - Charlie1a DNA MER1_type -504 951 545 1135 158 115 19 chr1 57073794 57074003 -225119661 + MER46A DNA MER2_type 1 229 -7 1950 214 52 48 chr1 57074006 57074422 -225119242 - Charlie1a DNA MER1_type -2220 541 121 2158 123 3 0 chr1 57074422 57074722 -225118942 + AluSx SINE Alu 1 301 -11 1950 214 52 48 chr1 57074722 57074842 -225118822 - Charlie1a DNA MER1_type -2640 121 3 2245 109 7 3 chr1 57074850 57075144 -225118520 - AluSq SINE Alu -17 296 2 205 169 130 65 chr1 57075269 57075346 -225118318 - MIR SINE MIR -62 200 119 1064 172 6 0 chr1 57075348 57075522 -225118142 - AluJb SINE Alu -6 306 132 1857 154 3 10 chr1 57075524 57075822 -225117842 - AluJo SINE Alu -16 296 1 187 269 15 75 chr1 57075858 57075925 -225117739 - MIR SINE MIR -184 78 16 23 54 0 0 chr1 57076155 57076192 -225117472 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 57076284 57076319 -225117345 + AT_rich Low_complexity Low_complexity 1 35 0 237 254 71 79 chr1 57076659 57076785 -225116879 - MIR SINE MIR 0 262 138 270 327 102 74 chr1 57077289 57077950 -225115714 + L2 LINE L2 2590 3270 -2 2315 93 7 0 chr1 57078075 57078385 -225115279 + AluSq SINE Alu 2 313 0 664 217 0 0 chr1 57079163 57079311 -225114353 + FLAM_A SINE Alu 1 148 0 4612 89 155 19 chr1 57080281 57081008 -225112656 + LTR12 LTR ERV1 1 826 0 1445 194 80 23 chr1 57081026 57081376 -225112288 + MLT1A2 LTR MaLR 1 370 -4 754 171 0 0 chr1 57081561 57081684 -225111980 + FLAM_C SINE Alu 1 123 -20 23 68 0 0 chr1 57081846 57081890 -225111774 + AT_rich Low_complexity Low_complexity 1 44 0 2461 63 3 0 chr1 57081892 57082193 -225111471 - AluSp SINE Alu -11 302 1 662 214 32 0 chr1 57082193 57082319 -225111345 - MER3 DNA MER1_type -68 141 12 188 436 0 18 chr1 57084268 57084378 -225109286 + MIR3 SINE MIR 14 121 -87 2184 99 0 7 chr1 57085122 57085428 -225108236 - AluSx SINE Alu 0 308 5 1586 180 24 7 chr1 57085524 57085813 -225107851 + AluJo SINE Alu 1 294 -18 489 90 0 0 chr1 57085819 57085886 -225107778 + AluS SINE Alu 1 67 -246 1612 140 8 0 chr1 57085903 57086138 -225107526 - AluSx SINE Alu -75 237 1 1031 240 0 18 chr1 57086290 57086511 -225107153 - MER58A DNA MER1_type -1 223 7 254 197 42 134 chr1 57086547 57086689 -225106975 - L1ME LINE L1 -345 5776 5648 1762 134 32 14 chr1 57087314 57087598 -225106066 - AluSx SINE Alu -23 289 1 2353 90 0 0 chr1 57087791 57088090 -225105574 - AluY SINE Alu -9 302 4 25 0 0 0 chr1 57091067 57091092 -225102572 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 57091624 57091654 -225102010 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 57093740 57093762 -225099902 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 57094785 57094806 -225098858 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 57097870 57097891 -225095773 + (A)n Simple_repeat Simple_repeat 1 21 0 2263 116 0 0 chr1 57097891 57098201 -225095463 + AluSq SINE Alu 1 310 -3 1752 148 0 0 chr1 57098464 57098714 -225094950 - AluSx SINE Alu -62 250 1 1916 101 10 56 chr1 57098870 57099176 -225094488 - AluSx SINE Alu -20 292 1 22 0 0 0 chr1 57099353 57099375 -225094289 + AT_rich Low_complexity Low_complexity 1 22 0 290 185 0 65 chr1 57099753 57099861 -225093803 + (TA)n Simple_repeat Simple_repeat 2 102 0 25 65 0 0 chr1 57100180 57100226 -225093438 + AT_rich Low_complexity Low_complexity 1 46 0 2591 183 50 6 chr1 57100410 57101060 -225092604 + L1M4 LINE L1 4759 5443 -735 * 3124 136 46 73 chr1 57101048 57101546 -225092118 + L1MA7 LINE L1 5648 6158 -133 468 0 0 0 chr1 57101546 57101598 -225092066 + (CA)n Simple_repeat Simple_repeat 1 52 0 3124 136 46 73 chr1 57101598 57101646 -225092018 + L1MA7 LINE L1 6158 6206 -85 1482 161 24 4 chr1 57101646 57101901 -225091763 - AluJb SINE Alu -52 260 1 3124 136 46 73 chr1 57101901 57102009 -225091655 + L1MA7 LINE L1 6206 6285 -6 380 269 58 0 chr1 57102213 57102317 -225091347 - L3 LINE CR1 -160 1417 1308 1874 166 34 0 chr1 57102358 57102653 -225091011 - AluSx SINE Alu -7 305 1 204 182 0 0 chr1 57103094 57103127 -225090537 - MIR SINE MIR -10 252 220 21 36 0 0 chr1 57103131 57103159 -225090505 + AT_rich Low_complexity Low_complexity 1 28 0 459 258 10 0 chr1 57103244 57103341 -225090323 + L2 LINE L2 3171 3268 -4 210 326 118 56 chr1 57103515 57103624 -225090040 - L2 LINE L2 -435 2879 2778 1939 132 13 13 chr1 57103624 57103928 -225089736 - AluSx SINE Alu -8 304 1 210 326 118 56 chr1 57103928 57104088 -225089576 - L2 LINE L2 -536 2778 2593 5328 215 66 16 chr1 57104095 57104312 -225089352 + L1 LINE L1 3850 4055 -2091 2413 98 0 0 chr1 57104312 57104619 -225089045 - AluSx SINE Alu -5 307 1 5328 215 66 16 chr1 57104619 57105819 -225087845 + L1 LINE L1 4055 5338 -808 312 281 72 88 chr1 57105829 57106078 -225087586 + L1M2a LINE L1 1149 1393 -5775 837 238 10 0 chr1 57106807 57107009 -225086655 + L1M2a LINE L1 1916 2119 -4979 319 183 17 0 chr1 57107009 57107069 -225086595 + AluJo SINE Alu 76 136 -166 1724 122 41 0 chr1 57107069 57107314 -225086350 - AluSq SINE Alu -58 255 1 201 310 35 0 chr1 57107318 57107376 -225086288 + L2 LINE L2 3204 3263 -9 268 273 27 55 chr1 57107443 57107553 -225086111 + L2 LINE L2 3016 3122 -150 205 239 45 45 chr1 57107579 57107646 -225086018 + L2 LINE L2 3199 3265 -7 191 158 53 0 chr1 57109172 57109210 -225084454 + MIR3 SINE MIR 161 200 -8 1045 166 18 69 chr1 57109259 57109476 -225084188 - AluJb SINE Alu -20 292 87 220 111 37 19 chr1 57111543 57111597 -225082067 + T-rich Low_complexity Low_complexity 4 58 0 23 0 0 0 chr1 57111908 57111931 -225081733 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr1 57111996 57112040 -225081624 + AT_rich Low_complexity Low_complexity 1 44 0 678 94 0 0 chr1 57112370 57112466 -225081198 - AluY SINE Alu -215 96 1 404 129 14 0 chr1 57112466 57112536 -225081128 - L1M4 LINE L1 -509 5675 5605 3901 166 19 61 chr1 57112559 57112913 -225080751 - L1MB3 LINE L1 0 6183 5816 274 23 47 0 chr1 57112913 57112956 -225080708 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 2308 71 3 0 chr1 57112956 57113238 -225080426 - AluSp SINE Alu -30 283 1 3901 166 19 61 chr1 57113238 57113603 -225080061 - L1MB3 LINE L1 -366 5817 5438 2342 88 0 3 chr1 57113603 57113908 -225079756 - AluY SINE Alu 0 311 8 3901 166 19 61 chr1 57113908 57114007 -225079657 - L1MB3 LINE L1 -745 5438 5407 2249 92 31 0 chr1 57114007 57114301 -225079363 - AluSx SINE Alu -9 303 1 3901 166 19 61 chr1 57114301 57114430 -225079234 - L1MB3 LINE L1 -776 5407 5274 349 202 56 0 chr1 57114403 57114492 -225079172 + L1MB7 LINE L1 6031 6124 -60 * 2228 114 10 0 chr1 57114640 57114947 -225078717 + AluSx SINE Alu 1 310 -2 2257 88 0 3 chr1 57114947 57115243 -225078421 + AluY SINE Alu 1 295 -16 565 277 43 0 chr1 57115243 57115431 -225078233 + L1PA16 LINE L1 2323 2518 -3628 1058 75 0 0 chr1 57115433 57115566 -225078098 + AluSq/x SINE Alu 1 133 -180 9263 186 34 17 chr1 57115663 57117017 -225076647 + L1PA16 LINE L1 2959 4289 -1877 2173 133 3 0 chr1 57117017 57117310 -225076354 + AluSx SINE Alu 3 296 -16 9263 186 34 17 chr1 57117310 57118938 -225074726 + L1PA16 LINE L1 4289 5985 -181 1233 336 77 22 chr1 57119127 57119864 -225073800 - L2 LINE L2 -494 2820 2043 1098 215 89 75 chr1 57119893 57120330 -225073334 + L1ME3A LINE L1 5692 6136 -34 655 271 131 8 chr1 57120358 57120602 -225073062 - L2 LINE L2 -1342 1972 1699 213 204 0 0 chr1 57120611 57120655 -225073009 + (TG)n Simple_repeat Simple_repeat 2 45 0 577 275 127 0 chr1 57121424 57121613 -225072051 + MIR SINE MIR 50 262 0 277 53 0 70 chr1 57121677 57121734 -225071930 - AluSp/q SINE Alu 0 303 251 1827 146 11 0 chr1 57122244 57122505 -225071159 - AluSx SINE Alu -11 301 38 963 230 94 46 chr1 57122759 57123363 -225070301 + LTR48 LTR ERV1 1 787 0 267 100 20 20 chr1 57123414 57123464 -225070200 - AluSc SINE Alu -3 296 247 1900 88 68 4 chr1 57123493 57123756 -225069908 - AluSc SINE Alu -29 280 1 1637 196 7 7 chr1 57123866 57124167 -225069497 - AluJb SINE Alu -11 301 1 2350 64 7 3 chr1 57124610 57124908 -225068756 + AluY SINE Alu 1 299 -12 198 203 38 18 chr1 57124923 57124975 -225068689 + MIR SINE MIR 57 99 -109 * 211 308 53 30 chr1 57124970 57125103 -225068561 - MIR SINE MIR -15 247 112 640 206 8 0 chr1 57125411 57125537 -225068127 + AluSg/x SINE Alu 166 292 -20 414 188 43 72 chr1 57125581 57125789 -225067875 + L1MC5 LINE L1 7610 7811 -150 2343 116 0 0 chr1 57125792 57126095 -225067569 + AluSx SINE Alu 1 303 -9 2302 110 0 0 chr1 57126240 57126549 -225067115 + AluSg SINE Alu 1 309 -1 724 225 145 29 chr1 57126549 57126696 -225066968 - L1MEc LINE L1 -4049 2347 2218 2183 102 36 13 chr1 57126696 57127001 -225066663 - AluSx SINE Alu 0 312 1 724 225 145 29 chr1 57127001 57127301 -225066363 - L1MEc LINE L1 -4178 2218 1848 1485 264 107 72 chr1 57127318 57127468 -225066196 - L1MEc LINE L1 -5247 1149 1006 2079 130 0 3 chr1 57127468 57127761 -225065903 - AluSx SINE Alu -16 296 5 1485 264 107 72 chr1 57127761 57128688 -225064976 - L1MEc LINE L1 -5390 1006 35 471 238 30 92 chr1 57129232 57129271 -225064393 - MIR SINE MIR -10 252 212 809 230 17 64 chr1 57129271 57129413 -225064251 - MER58A DNA MER1_type -2196 224 96 2207 98 6 19 chr1 57129413 57129729 -225063935 + AluSx SINE Alu 1 312 0 809 230 17 64 chr1 57129729 57129821 -225063843 - MER58A DNA MER1_type -2324 96 1 471 238 30 92 chr1 57129821 57129844 -225063820 - MIR SINE MIR -50 212 189 323 225 0 0 chr1 57129844 57129924 -225063740 + MER116 DNA Mariner 1 80 0 471 238 30 92 chr1 57129924 57130024 -225063640 - MIR SINE MIR -73 189 99 1009 169 0 0 chr1 57130717 57130877 -225062787 - AluSg/x SINE Alu -12 300 141 1609 146 3 89 chr1 57131213 57131515 -225062149 + AluSg SINE Alu 3 278 -32 2498 80 3 0 chr1 57131553 57131865 -225061799 + AluSp SINE Alu 1 313 0 1970 120 12 58 chr1 57131876 57132202 -225061462 + AluSx SINE Alu 1 311 -1 562 176 49 7 chr1 57132830 57132972 -225060692 - L1MB7 LINE L1 0 6184 6037 490 261 22 11 chr1 57134148 57134328 -225059336 - L1MC5 LINE L1 -36 7925 7744 247 184 0 0 chr1 57134413 57134451 -225059213 - L2 LINE L2 -18 3254 3217 2173 112 14 0 chr1 57134904 57135199 -225058465 - AluSq SINE Alu -14 299 1 1063 173 0 0 chr1 57135199 57135367 -225058297 - AluSg/x SINE Alu -13 299 132 4458 150 42 14 chr1 57135467 57136233 -225057431 - MER54B LTR ERVL -6 787 1 2426 81 7 0 chr1 57136245 57136554 -225057110 - AluY SINE Alu 0 311 1 282 308 36 36 chr1 57136562 57136812 -225056852 - L1MEc LINE L1 -3109 3106 2857 2251 85 0 3 chr1 57136956 57137261 -225056403 - AluY SINE Alu 0 304 1 384 287 184 39 chr1 57137297 57137834 -225055830 - L1MEc LINE L1 -3617 2598 2032 277 319 139 7 chr1 57137915 57138059 -225055605 + MIR SINE MIR 99 261 -1 1433 238 10 44 chr1 57138316 57138703 -225054961 + MLT1A2 LTR MaLR 1 374 0 1904 151 0 0 chr1 57138711 57138983 -225054681 - AluSx SINE Alu -40 272 1 270 329 147 24 chr1 57139067 57139319 -225054345 + L2 LINE L2 1704 1986 -1328 2509 71 0 0 chr1 57139339 57139647 -225054017 + AluY SINE Alu 1 308 -3 1746 182 7 16 chr1 57140597 57140905 -225052759 - AluJo SINE Alu -7 305 1 2468 87 0 3 chr1 57141354 57141665 -225051999 + AluSq SINE Alu 1 310 -3 2314 106 3 0 chr1 57143050 57143351 -225050313 + AluSp SINE Alu 3 304 -9 205 182 30 45 chr1 57144011 57144077 -225049587 + (TA)n Simple_repeat Simple_repeat 2 66 0 232 200 0 0 chr1 57144118 57144168 -225049496 + L1MC4 LINE L1 6654 6703 -1339 225 294 0 0 chr1 57144168 57144219 -225049445 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 236 260 26 0 chr1 57144223 57144300 -225049364 + L1MC4 LINE L1 6617 6695 -1347 232 271 0 0 chr1 57144305 57144353 -225049311 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 239 302 57 19 chr1 57144529 57144635 -225049029 - MIR3 SINE MIR -11 197 88 985 253 61 44 chr1 57144905 57145249 -225048415 - L2 LINE L2 0 3313 2964 277 191 0 16 chr1 57145407 57145470 -225048194 + MER112 DNA MER1_type 105 166 -94 255 318 165 0 chr1 57145921 57146006 -225047658 - L2 LINE L2 0 3272 3174 1418 339 76 19 chr1 57146059 57146902 -225046762 - L2 LINE L2 -266 3047 2158 1697 198 10 25 chr1 57146913 57147227 -225046437 + AluJo SINE Alu 1 309 -3 1898 160 0 0 chr1 57147288 57147570 -225046094 - AluSx SINE Alu -30 282 1 1473 203 79 3 chr1 57147716 57148032 -225045632 + MER58B DNA MER1_type 1 340 -1 2273 125 0 0 chr1 57148202 57148514 -225045150 - AluSx SINE Alu 0 312 1 2143 115 7 0 chr1 57148679 57148966 -225044698 + AluSg SINE Alu 3 291 -19 2108 121 0 46 chr1 57149892 57150215 -225043449 + AluSq SINE Alu 1 308 -5 1793 164 148 8 chr1 57150303 57150675 -225042989 + MSTA LTR MaLR 1 424 -4 7877 178 66 6 chr1 57150679 57151135 -225042529 + MSTA-int LTR MaLR 1 428 -1223 396 0 0 0 chr1 57151135 57151179 -225042485 + (TA)n Simple_repeat Simple_repeat 2 45 0 2472 81 7 0 chr1 57151179 57151487 -225042177 - AluSp SINE Alu -3 310 1 7877 178 66 6 chr1 57151487 57152581 -225041083 + MSTA-int LTR MaLR 427 1646 -5 2096 140 119 8 chr1 57152586 57152971 -225040693 + MSTA LTR MaLR 1 428 0 2317 95 20 3 chr1 57153100 57153405 -225040259 + AluSq SINE Alu 2 311 -2 1728 178 0 10 chr1 57154399 57154691 -225038973 + AluJo SINE Alu 11 299 -13 414 268 28 42 chr1 57154702 57154844 -225038820 + MIR SINE MIR 117 256 -6 180 319 28 14 chr1 57154856 57154928 -225038736 + MIR SINE MIR 172 244 -18 427 86 0 0 chr1 57155181 57155239 -225038425 + U6 snRNA snRNA 1 58 -49 367 246 33 5 chr1 57155302 57155459 -225038205 - L1ME1 LINE L1 -61 6104 5939 2160 122 10 6 chr1 57155497 57155808 -225037856 - AluSx SINE Alu 0 312 1 227 89 0 22 chr1 57155865 57155910 -225037754 - L1MEc LINE L1 -2191 4191 4148 256 207 53 136 chr1 57156035 57156204 -225037460 + L1M4 LINE L1 3923 4077 -2069 2124 128 0 28 chr1 57156236 57156555 -225037109 - AluSg SINE Alu 0 310 1 1205 269 84 37 chr1 57156629 57156878 -225036786 - L1MEc LINE L1 -2371 4011 3775 2176 114 0 7 chr1 57156878 57157185 -225036479 - AluSx SINE Alu -7 305 1 1205 269 84 37 chr1 57157185 57157589 -225036075 - L1MEc LINE L1 -2607 3775 3327 2169 121 7 3 chr1 57157590 57157897 -225035767 - AluSx SINE Alu -4 308 1 1183 239 91 29 chr1 57157925 57158411 -225035253 - L1ME1 LINE L1 -5 6161 5646 2208 226 49 19 chr1 57158450 57158668 -225034996 - L1MEc LINE L1 -5254 1142 932 2199 123 0 0 chr1 57158668 57158969 -225034695 - AluSg SINE Alu -9 301 1 2208 226 49 19 chr1 57158969 57159400 -225034264 - L1MEc LINE L1 -5464 932 473 246 237 0 0 chr1 57159396 57159455 -225034209 - L1MEc LINE L1 -6293 103 45 * 1710 254 76 52 chr1 57159465 57159598 -225034066 - L1MEc LINE L1 -3058 3324 3196 2313 117 48 14 chr1 57159598 57159950 -225033714 - THE1B LTR MaLR 0 364 1 11716 91 8 0 chr1 57159950 57161517 -225032147 - THE1B-int LTR MaLR 0 1580 1 2253 89 71 31 chr1 57161517 57161867 -225031797 - THE1B LTR MaLR 0 364 1 1710 254 76 52 chr1 57161867 57162839 -225030825 - L1MEc LINE L1 -3185 3197 2214 1869 169 7 0 chr1 57162841 57163131 -225030533 - AluSx SINE Alu -20 292 1 1063 104 0 0 chr1 57163131 57163266 -225030398 - AluSq/x SINE Alu -176 136 2 813 246 79 38 chr1 57163266 57163745 -225029919 - L1MEc LINE L1 -4343 2220 1489 1999 97 0 0 chr1 57163745 57164024 -225029640 - AluY SINE Alu 0 311 32 813 246 79 38 chr1 57164024 57164040 -225029624 - L1MEc LINE L1 -5074 1489 1475 7571 29 0 0 chr1 57164060 57164990 -225028674 - L1PA3 LINE L1 0 6155 5230 23687 30 0 0 chr1 57165009 57167863 -225025801 + L1PA3 LINE L1 2397 5250 -896 2040 122 3 10 chr1 57167888 57168182 -225025482 + AluSx SINE Alu 1 292 -20 186 43 0 0 chr1 57168192 57168215 -225025449 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 402 326 42 45 chr1 57168239 57168598 -225025066 - L1MEc LINE L1 -4900 1484 1127 1894 178 66 11 chr1 57168625 57169152 -225024512 + Charlie1 DNA MER1_type 2046 2663 -98 801 336 33 13 chr1 57169285 57169681 -225023983 - L1MEc LINE L1 -5961 602 199 2308 90 0 3 chr1 57170724 57171024 -225022640 + AluSq SINE Alu 1 299 -14 1262 196 0 13 chr1 57171390 57171615 -225022049 + L1PA15 LINE L1 54 275 -6564 * 16938 212 21 17 chr1 57171614 57174684 -225018980 + L1PA15 LINE L1 1567 4654 -2214 2181 130 0 0 chr1 57174684 57174984 -225018680 + AluSx SINE Alu 1 300 -12 16938 212 21 17 chr1 57174984 57176532 -225017132 + L1PA15 LINE L1 4654 6195 -673 2280 108 0 0 chr1 57176534 57176841 -225016823 + AluSq SINE Alu 1 307 -6 198 0 0 0 chr1 57177091 57177113 -225016551 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 4607 105 0 5 chr1 57177114 57177771 -225015893 + L1PA15 LINE L1 6197 6850 -18 28 0 0 0 chr1 57177811 57177839 -225015825 + AT_rich Low_complexity Low_complexity 1 28 0 530 250 0 9 chr1 57178080 57178188 -225015476 + FRAM SINE Alu 39 145 -31 2746 194 40 38 chr1 57178223 57178889 -225014775 + L1MA7 LINE L1 5620 6287 -4 208 266 0 76 chr1 57179245 57179324 -225014340 - MIR SINE MIR -139 123 51 195 301 97 71 chr1 57179605 57179718 -225013946 - L2 LINE L2 -3 3269 3154 23 0 0 0 chr1 57180021 57180044 -225013620 + AT_rich Low_complexity Low_complexity 1 23 0 243 398 30 62 chr1 57180166 57180601 -225013063 - L2 LINE L2 0 3272 2852 24 0 0 0 chr1 57181554 57181578 -225012086 + AT_rich Low_complexity Low_complexity 1 24 0 752 197 7 0 chr1 57181897 57182039 -225011625 + FLAM_C SINE Alu 1 143 0 1562 159 7 51 chr1 57182061 57182356 -225011308 + AluJo SINE Alu 13 294 -18 1751 241 107 19 chr1 57182702 57183271 -225010393 + L1ME3 LINE L1 5464 6082 -80 1680 152 103 24 chr1 57183289 57183619 -225010045 - Tigger2 DNA MER2_type -1 2717 2362 567 199 0 46 chr1 57183619 57183750 -225009914 + FRAM SINE Alu 33 157 -19 282 29 0 0 chr1 57183750 57183785 -225009879 + (CA)n Simple_repeat Simple_repeat 2 36 0 4221 123 47 9 chr1 57183786 57184461 -225009203 - Tigger1 DNA MER2_type -354 2064 1364 22 80 0 0 chr1 57184470 57184520 -225009144 + AT_rich Low_complexity Low_complexity 1 50 0 950 249 105 23 chr1 57184538 57184726 -225008938 + L1MB1 LINE L1 2025 2196 -4268 755 203 0 0 chr1 57184726 57184859 -225008805 + FLAM_A SINE Alu 1 133 0 950 249 105 23 chr1 57184859 57184895 -225008769 + L1MB1 LINE L1 2196 2228 -4236 327 96 0 0 chr1 57184895 57184947 -225008717 + (CA)n Simple_repeat Simple_repeat 1 52 0 950 249 105 23 chr1 57184947 57185194 -225008470 + L1MB1 LINE L1 2228 2576 -3888 1654 246 32 18 chr1 57186224 57186784 -225006880 + L1MB1 LINE L1 2513 3080 -3302 3565 112 53 153 chr1 57186794 57187464 -225006200 + Tigger3b DNA MER2_type 1 679 -2350 863 139 0 29 chr1 57187464 57187601 -225006063 - FLAM_C SINE Alu -6 137 5 3565 112 53 153 chr1 57187601 57187866 -225005798 + Tigger3b DNA MER2_type 679 969 -263 8219 174 32 69 chr1 57187976 57188516 -225005148 + L1MB1 LINE L1 3565 4123 -2281 2162 111 0 3 chr1 57188516 57188804 -225004860 + AluSx SINE Alu 1 287 -25 8219 174 32 69 chr1 57188804 57190001 -225003663 + L1MB1 LINE L1 4123 5363 -1041 465 139 0 0 chr1 57190001 57190080 -225003584 + AluJ/FRAM SINE Alu 227 305 -7 8219 174 32 69 chr1 57190080 57190770 -225002894 + L1MB1 LINE L1 5363 5939 -465 1863 143 7 20 chr1 57190770 57191071 -225002593 + AluJo SINE Alu 1 297 -15 8219 174 32 69 chr1 57191071 57191516 -225002148 + L1MB1 LINE L1 5939 6399 -5 573 360 86 2 chr1 57191571 57191842 -225001822 - L2 LINE L2 -284 2988 2703 1021 185 66 113 chr1 57192202 57192581 -225001083 + MLT1A1 LTR MaLR 5 365 0 211 343 93 48 chr1 57193534 57193754 -224999910 + L2 LINE L2 1336 1583 -1731 1656 188 0 10 chr1 57193754 57194057 -224999607 - AluJo SINE Alu -10 302 3 211 343 93 48 chr1 57194057 57194235 -224999429 + L2 LINE L2 1583 1752 -1562 687 337 129 14 chr1 57194292 57194874 -224998790 + L2 LINE L2 2329 2977 -337 304 314 22 88 chr1 57195024 57195071 -224998593 + L2 LINE L2 3186 3235 -78 2102 106 34 0 chr1 57195071 57195364 -224998300 - AluSg SINE Alu -7 303 1 304 314 22 88 chr1 57195364 57195453 -224998211 + L2 LINE L2 3235 3313 0 38 0 0 0 chr1 57195701 57195739 -224997925 + AT_rich Low_complexity Low_complexity 1 38 0 453 251 213 19 chr1 57195757 57195968 -224997696 - MER112 DNA MER1_type -3 257 6 552 272 64 29 chr1 57196237 57196410 -224997254 + LTR50 LTR ERVL 4 182 -613 522 251 226 7 chr1 57196500 57196794 -224996870 + LTR50 LTR ERVL 344 787 -8 386 308 87 78 chr1 57197418 57197844 -224995820 + ERVL LTR ERVL 1177 1606 -4158 208 139 0 0 chr1 57197899 57197935 -224995729 + (T)n Simple_repeat Simple_repeat 1 36 0 522 380 46 11 chr1 57197949 57198320 -224995344 + ERVL LTR ERVL 1640 2023 -3741 551 344 11 0 chr1 57198351 57198534 -224995130 + ERVL LTR ERVL 2084 2268 -3496 677 286 64 35 chr1 57198537 57198774 -224994890 + ERVL LTR ERVL 2567 2819 -2945 1310 176 0 21 chr1 57198774 57199013 -224994651 + MER46A DNA MER2_type 2 235 -1 677 286 64 35 chr1 57199013 57199118 -224994546 + ERVL LTR ERVL 2819 2919 -2845 2488 284 62 27 chr1 57199180 57199548 -224994116 + ERVL LTR ERVL 3653 4007 -1757 2147 102 0 42 chr1 57199548 57199861 -224993803 - AluSq SINE Alu -13 300 1 2488 284 62 27 chr1 57199861 57200372 -224993292 + ERVL LTR ERVL 4007 4563 -1201 723 306 100 55 chr1 57200628 57201119 -224992545 + ERVL LTR ERVL 4865 5377 -387 183 42 0 0 chr1 57201129 57201153 -224992511 + (CA)n Simple_repeat Simple_repeat 2 25 0 301 287 11 21 chr1 57201299 57201393 -224992271 + LTR50 LTR ERVL 380 472 -323 331 278 53 23 chr1 57201640 57201773 -224991891 + LTR33A LTR ERVL 353 489 -34 1983 137 0 20 chr1 57201774 57202067 -224991597 + AluJb SINE Alu 3 289 -23 1583 186 55 0 chr1 57202344 57202635 -224991029 + AluJo SINE Alu 2 308 -4 631 196 45 23 chr1 57202650 57202783 -224990881 + FLAM_A SINE Alu 2 137 -5 288 338 87 0 chr1 57203578 57203696 -224989968 + MIR SINE MIR 36 149 -59 674 151 0 0 chr1 57203800 57203906 -224989758 - AluSx SINE Alu -8 304 199 1025 100 0 0 chr1 57203906 57204036 -224989628 - AluSx SINE Alu -182 130 1 525 284 131 14 chr1 57204092 57204314 -224989350 + MIR SINE MIR 1 248 -14 21 0 0 0 chr1 57205075 57205096 -224988568 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr1 57206685 57206728 -224986936 + AT_rich Low_complexity Low_complexity 1 43 0 2397 84 3 0 chr1 57207017 57207314 -224986350 - AluSp SINE Alu -15 298 1 431 292 39 8 chr1 57208254 57208384 -224985280 + MIR SINE MIR 8 141 -121 251 203 34 17 chr1 57208457 57208516 -224985148 + L2 LINE L2 3254 3313 0 186 351 128 0 chr1 57208573 57208667 -224984997 - L2 LINE L2 -232 3040 2935 349 282 0 24 chr1 57209012 57209097 -224984567 - L2 LINE L2 -5 3267 3185 255 262 262 10 chr1 57210788 57210891 -224982773 - MIR SINE MIR -26 236 108 744 226 120 20 chr1 57210925 57211376 -224982288 + L1MB7 LINE L1 5121 5607 -557 11807 219 50 29 chr1 57211413 57212168 -224981496 + L1PA15 LINE L1 1225 1962 -4854 2045 129 137 16 chr1 57212168 57212548 -224981116 - MSTA LTR MaLR 0 428 3 11807 219 50 29 chr1 57212548 57214868 -224978796 + L1PA15 LINE L1 1962 4231 -2585 2114 121 3 7 chr1 57214868 57215173 -224978491 + AluSq SINE Alu 1 304 -9 11807 219 50 29 chr1 57215173 57215661 -224978003 + L1PA15 LINE L1 4231 4707 -2109 1832 149 21 0 chr1 57215661 57215943 -224977721 + AluSx SINE Alu 1 288 -24 1511 200 0 15 chr1 57215949 57216219 -224977445 + AluJb SINE Alu 3 268 -44 249 98 0 0 chr1 57216225 57216266 -224977398 + (CAA)n Simple_repeat Simple_repeat 2 42 0 11807 219 50 29 chr1 57216266 57218129 -224975535 + L1PA15 LINE L1 4715 6816 0 415 217 163 93 chr1 57218159 57218365 -224975299 - L1ME4a LINE L1 -3 6118 5889 1718 156 0 8 chr1 57218365 57218628 -224975036 - AluJb SINE Alu -21 291 31 415 217 163 93 chr1 57218628 57218679 -224974985 - L1ME4a LINE L1 -232 5889 5843 358 141 56 28 chr1 57218716 57218787 -224974877 + L1MB7 LINE L1 5615 5687 -479 1367 151 36 12 chr1 57218789 57219041 -224974623 - Tigger7 DNA MER2_type -3 2488 2231 246 175 0 0 chr1 57219368 57219425 -224974239 + L1MB7 LINE L1 5814 5870 -294 347 237 21 0 chr1 57219434 57219527 -224974137 + L1ME2 LINE L1 5814 5908 -256 2066 114 18 102 chr1 57219527 57219966 -224973698 + L1MB3 LINE L1 5285 5686 -497 4432 126 70 22 chr1 57219984 57220637 -224973027 - L1PA16 LINE L1 -9 6157 5457 2252 106 0 10 chr1 57220637 57220939 -224972725 + AluSx SINE Alu 1 299 -13 4432 126 70 22 chr1 57220939 57221088 -224972576 - L1PA16 LINE L1 -709 5457 5317 2460 55 0 0 chr1 57221216 57221506 -224972158 - AluY SINE Alu -21 290 1 2809 215 8 9 chr1 57221506 57222163 -224971501 - L1PA16 LINE L1 -816 5330 4675 2720 145 22 18 chr1 57222169 57222673 -224970991 + L1MB3 LINE L1 5676 6181 -2 776 174 35 17 chr1 57222693 57222865 -224970799 + L1MB7 LINE L1 5999 6173 -11 281 220 93 68 chr1 57222938 57223056 -224970608 + L1ME2 LINE L1 5891 6011 -155 343 223 71 27 chr1 57223069 57223181 -224970483 + L1MA10 LINE L1 6217 6333 -1 1695 210 100 24 chr1 57223182 57223643 -224970021 + L1ME2 LINE L1 5430 5925 -239 588 196 0 0 chr1 57223643 57223750 -224969914 - MER46B DNA MER2_type 0 236 130 666 50 0 61 chr1 57223762 57223861 -224969803 + AluY SINE Alu 205 297 -14 1695 142 4 0 chr1 57223861 57224122 -224969542 - MER46B DNA MER2_type -99 137 1 537 226 99 95 chr1 57224122 57224343 -224969321 + L1ME2 LINE L1 5924 6145 -19 1544 173 4 43 chr1 57224343 57224620 -224969044 + AluJo SINE Alu 9 274 -38 282 29 0 0 chr1 57224637 57224672 -224968992 + (CA)n Simple_repeat Simple_repeat 1 35 0 1008 86 0 0 chr1 57224682 57224822 -224968842 + (TA)n Simple_repeat Simple_repeat 1 140 0 237 175 18 0 chr1 57224869 57224926 -224968738 + (TA)n Simple_repeat Simple_repeat 2 59 0 959 151 0 28 chr1 57225062 57225241 -224968423 + L1MB2 LINE L1 5921 6094 -77 449 262 28 117 chr1 57225242 57225332 -224968332 + MIR SINE MIR 17 113 -149 3208 131 27 55 chr1 57225332 57225966 -224967698 - L1MA9 LINE L1 -5 6307 5692 449 262 28 117 chr1 57225966 57225996 -224967668 + MIR SINE MIR 113 144 -118 631 52 0 0 chr1 57225996 57226073 -224967591 + MADE1 DNA Mariner 4 80 0 449 262 28 117 chr1 57226073 57226165 -224967499 + MIR SINE MIR 144 211 -51 263 322 103 20 chr1 57226244 57226390 -224967274 + MER5A DNA MER1_type 26 183 -6 729 271 64 14 chr1 57226546 57226764 -224966900 + MIR SINE MIR 20 248 -14 2339 97 3 0 chr1 57227765 57228076 -224965588 - AluSp SINE Alu -1 312 1 357 244 12 0 chr1 57228459 57228545 -224965119 + L2 LINE L2 2398 2484 -830 4179 151 39 12 chr1 57229482 57230243 -224963421 + L1MA4 LINE L1 5508 6289 -11 1659 249 59 71 chr1 57230280 57231271 -224962393 + L1ME LINE L1 2236 3237 -2909 2055 117 13 13 chr1 57231271 57231569 -224962095 + AluSx SINE Alu 1 298 -14 1659 249 59 71 chr1 57231569 57231876 -224961788 + L1ME LINE L1 3237 3521 -2625 5078 87 40 27 chr1 57231876 57232666 -224960998 + SVA Other Other 605 1404 0 1659 249 59 71 chr1 57232666 57232712 -224960952 + L1ME LINE L1 3521 3566 -2580 1717 257 81 39 chr1 57232843 57233259 -224960405 + L1ME LINE L1 4478 4875 -1295 2494 74 0 3 chr1 57233259 57233571 -224960093 - AluY SINE Alu 0 311 1 1717 257 81 39 chr1 57233571 57234205 -224959459 + L1ME LINE L1 4875 5569 -601 2128 110 26 23 chr1 57235101 57235411 -224958253 - AluSx SINE Alu 0 312 2 187 200 0 25 chr1 57235682 57235722 -224957942 + L2 LINE L2 2742 2780 -534 256 382 93 39 chr1 57236373 57236577 -224957087 + L2 LINE L2 3058 3272 0 339 214 133 95 chr1 57236647 57236857 -224956807 + MLT1C LTR MaLR 6 223 -244 2834 133 15 0 chr1 57236869 57237276 -224956388 + MER1A DNA MER1_type 117 529 0 2875 229 30 50 chr1 57238060 57238826 -224954838 - MER21B LTR ERV1 -112 751 1 232 290 29 72 chr1 57238913 57238965 -224954699 + L2 LINE L2 2614 2667 -647 2067 123 136 18 chr1 57238965 57239348 -224954316 + MSTA LTR MaLR 1 428 0 232 290 29 72 chr1 57239348 57239433 -224954231 + L2 LINE L2 2667 2745 -569 417 282 48 69 chr1 57239440 57239628 -224954036 - MIR3 SINE MIR -1 207 24 188 365 71 47 chr1 57239800 57239970 -224953694 - L2 LINE L2 -100 3172 2999 243 313 210 33 chr1 57240063 57240306 -224953358 - L2 LINE L2 -428 2886 2601 185 304 65 76 chr1 57240372 57240464 -224953200 + MIR SINE MIR 17 107 -155 1045 75 0 0 chr1 57240464 57240597 -224953067 + AluSg/x SINE Alu 173 305 -5 193 215 165 25 chr1 57240996 57241075 -224952589 + MIR SINE MIR 78 167 -95 969 200 0 0 chr1 57241160 57241335 -224952329 - FRAM SINE Alu 0 176 2 396 268 43 18 chr1 57241538 57241702 -224951962 - L1MC4 LINE L1 -6 8036 7869 263 111 0 0 chr1 57241702 57241747 -224951917 + L1MA6 LINE L1 6256 6300 0 855 235 77 84 chr1 57241758 57241949 -224951715 - L1MC4 LINE L1 -160 7882 7691 2555 65 3 0 chr1 57241949 57242257 -224951407 - AluY SINE Alu -2 309 1 855 235 77 84 chr1 57242257 57242504 -224951160 - L1MC4 LINE L1 -351 7691 7447 2320 88 0 0 chr1 57242749 57243044 -224950620 - AluY SINE Alu -16 295 1 24 103 0 0 chr1 57243355 57243442 -224950222 + AT_rich Low_complexity Low_complexity 1 87 0 206 255 34 20 chr1 57243465 57243614 -224950050 + (TA)n Simple_repeat Simple_repeat 2 152 0 26 30 0 0 chr1 57244099 57244132 -224949532 + AT_rich Low_complexity Low_complexity 1 33 0 1731 223 33 26 chr1 57244960 57245499 -224948165 + L1ME4a LINE L1 4850 5392 -754 450 299 0 0 chr1 57245501 57245638 -224948026 + L1ME2 LINE L1 6015 6151 -13 432 233 192 25 chr1 57245688 57245928 -224947736 + L1ME4a LINE L1 5545 5824 -297 279 230 204 9 chr1 57246381 57246494 -224947170 + L1ME4a LINE L1 5964 6098 -23 926 270 94 48 chr1 57247508 57248004 -224945660 + L2 LINE L2 2777 3299 -14 6148 121 32 10 chr1 57248249 57249325 -224944339 - L1MA4 LINE L1 0 6300 5201 364 319 101 49 chr1 57249615 57249922 -224943742 - L2 LINE L2 -2271 1043 721 539 191 36 89 chr1 57250053 57250221 -224943443 + LTR41 LTR ERVL 1 159 -614 2032 125 13 13 chr1 57250838 57251150 -224942514 + AluSq SINE Alu 1 312 -1 500 234 32 19 chr1 57251156 57251314 -224942350 + L1MCc LINE L1 1248 1407 -5016 601 250 87 65 chr1 57252270 57252692 -224940972 + L1MCc LINE L1 1390 1830 -5111 504 198 0 0 chr1 57252692 57252788 -224940876 + L1MB5 LINE L1 6071 6166 -8 601 250 87 65 chr1 57252788 57252964 -224940700 + L1MCc LINE L1 1830 2001 -4940 * 682 296 71 26 chr1 57252956 57253338 -224940326 + L1MCc LINE L1 2306 2704 -4418 2288 239 36 23 chr1 57253420 57253971 -224939693 + L1MC4a LINE L1 7110 7673 -135 2254 101 0 32 chr1 57253971 57254287 -224939377 + AluSg SINE Alu 1 306 -4 2288 239 36 23 chr1 57254287 57254399 -224939265 + L1MC4a LINE L1 7673 7782 -26 32 0 0 0 chr1 57255573 57255605 -224938059 + AT_rich Low_complexity Low_complexity 1 32 0 1764 157 39 3 chr1 57256076 57256362 -224937302 - AluSx SINE Alu -11 301 6 640 272 82 10 chr1 57257638 57257850 -224935814 + MIR SINE MIR 27 248 -14 312 286 83 38 chr1 57258957 57259090 -224934574 - MIR3 SINE MIR -33 175 37 738 146 46 15 chr1 57259810 57259940 -224933724 + MER46A DNA MER2_type 5 138 -98 834 163 95 42 chr1 57259969 57260159 -224933505 + MER46A DNA MER2_type 37 236 0 187 233 23 23 chr1 57261440 57261483 -224932181 + MIR SINE MIR 3 45 -217 686 266 128 39 chr1 57261569 57262115 -224931549 + L1ME4a LINE L1 5527 6121 0 21 36 0 0 chr1 57262286 57262314 -224931350 + AT_rich Low_complexity Low_complexity 1 28 0 365 190 9 60 chr1 57263299 57263415 -224930249 + L1M4 LINE L1 4927 5036 -1110 1112 196 60 14 chr1 57263454 57263735 -224929929 + MER33 DNA MER1_type 17 310 -14 551 158 11 21 chr1 57263798 57263893 -224929771 + L1PA16 LINE L1 406 499 -6350 6983 185 45 7 chr1 57263894 57266221 -224927443 + L1PA16 LINE L1 4455 6867 -2 734 224 63 0 chr1 57266253 57266396 -224927268 + MLT1A2 LTR MaLR 1 152 -222 1816 144 23 7 chr1 57266396 57266701 -224926963 + L1PB4 LINE L1 5845 6154 -2 22 0 0 0 chr1 57266784 57266806 -224926858 + AT_rich Low_complexity Low_complexity 1 22 0 618 269 30 25 chr1 57266810 57267011 -224926653 + MLT1A2 LTR MaLR 173 374 0 698 257 63 26 chr1 57267015 57267396 -224926268 + L1M4 LINE L1 897 1291 -5251 628 221 7 0 chr1 57267382 57267522 -224926142 + L1MA4 LINE L1 5956 6096 -204 * 6994 202 21 70 chr1 57267510 57269420 -224924244 + L1PB1 LINE L1 2829 4831 -2036 7755 19 3 0 chr1 57269420 57270843 -224922821 + L1PA3 LINE L1 4730 6155 0 6994 202 21 70 chr1 57270843 57273319 -224920345 + L1PB1 LINE L1 4831 6860 -7 2974 245 77 15 chr1 57273365 57274407 -224919257 - L1MEc LINE L1 -2961 3168 2094 249 272 88 27 chr1 57274481 57274628 -224919036 - L1MEc LINE L1 -4904 1215 1060 13688 144 37 18 chr1 57275109 57275165 -224918499 + Tigger1 DNA MER2_type 12 65 -2353 1949 148 3 3 chr1 57275165 57275470 -224918194 + AluSx SINE Alu 1 305 -7 13688 144 37 18 chr1 57275470 57276821 -224916843 + Tigger1 DNA MER2_type 65 1388 -1030 2241 42 0 0 chr1 57276821 57277084 -224916580 + AluY SINE Alu 48 310 -1 13688 144 37 18 chr1 57277084 57277605 -224916059 + Tigger1 DNA MER2_type 1388 1998 -420 2344 70 3 10 chr1 57277605 57277905 -224915759 + AluSq SINE Alu 1 298 -15 13688 144 37 18 chr1 57277905 57278322 -224915342 + Tigger1 DNA MER2_type 1998 2405 -13 1112 214 113 33 chr1 57278515 57278895 -224914769 + MER66A LTR ERV1 174 478 0 229 176 20 20 chr1 57279005 57279056 -224914608 - MER66B LTR ERV1 0 486 436 1421 234 10 0 chr1 57279359 57279649 -224914015 - AluJo SINE Alu -19 293 1 1387 153 0 45 chr1 57279749 57279991 -224913673 - AluJb SINE Alu -1 311 81 1259 138 76 62 chr1 57280260 57280440 -224913224 - L1MA8 LINE L1 -6 6285 6098 2202 130 0 0 chr1 57280440 57280741 -224912923 - AluSg SINE Alu -9 301 1 1259 138 76 62 chr1 57280741 57280864 -224912800 - L1MA8 LINE L1 -193 6098 5978 211 390 22 67 chr1 57280989 57281258 -224912406 - L2 LINE L2 -98 3174 2918 4358 143 43 64 chr1 57281296 57281568 -224912096 + L1MC3 LINE L1 6702 6978 -807 2197 90 7 0 chr1 57281568 57281874 -224911790 - AluSx SINE Alu 0 308 1 4358 143 43 64 chr1 57281874 57282496 -224911168 + L1MC3 LINE L1 6978 7579 -206 22 0 0 0 chr1 57282588 57282610 -224911054 + AT_rich Low_complexity Low_complexity 1 22 0 2148 182 45 7 chr1 57282775 57283219 -224910445 + MER65C LTR ERV1 1 461 0 201 224 134 0 chr1 57283632 57283699 -224909965 - MIR SINE MIR -48 214 139 362 250 178 20 chr1 57283759 57283911 -224909753 - MIR SINE MIR -66 196 21 1860 156 3 0 chr1 57283957 57284239 -224909425 + AluSx SINE Alu 4 286 -26 288 77 0 0 chr1 57284239 57284278 -224909386 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 1171 141 16 0 chr1 57284663 57284847 -224908817 + MER5A DNA MER1_type 3 189 0 1140 208 48 84 chr1 57285356 57285727 -224907937 + MLT1A2 LTR MaLR 4 361 -13 470 251 16 64 chr1 57285931 57286118 -224907546 - MER5B DNA MER1_type 0 178 1 403 298 9 9 chr1 57286166 57286280 -224907384 - MER5A DNA MER1_type -50 139 26 186 290 14 14 chr1 57286332 57286401 -224907263 + L2 LINE L2 2933 3001 -271 1960 128 0 31 chr1 57287302 57287641 -224906023 + AluSx SINE Alu 1 330 0 2264 94 7 3 chr1 57287694 57287993 -224905671 + AluSx SINE Alu 1 300 -12 207 261 58 0 chr1 57288015 57288084 -224905580 - L2 LINE L2 -1344 1970 1898 232 282 24 24 chr1 57288344 57288429 -224905235 + L1MC4a LINE L1 7260 7344 -464 367 321 76 43 chr1 57288525 57288802 -224904862 + L1MC4 LINE L1 7492 7777 -265 2110 96 0 0 chr1 57288832 57289104 -224904560 + AluSx SINE Alu 1 272 -40 1919 114 26 49 chr1 57289222 57289529 -224904135 + AluSx SINE Alu 1 300 -12 2491 227 20 28 chr1 57289552 57290234 -224903430 - L1 LINE L1 -2298 5267 4591 198 118 0 0 chr1 57290269 57290303 -224903361 + (TC)n Simple_repeat Simple_repeat 1 34 0 4659 139 37 7 chr1 57290314 57291379 -224902285 - L1 LINE L1 -3628 3937 2839 * 40989 66 8 1 chr1 57291372 57297482 -224896182 - L1PA5 LINE L1 -4 6150 3 10214 140 36 27 chr1 57297480 57299025 -224894639 - L1 LINE L1 -4712 2853 1289 * 2135 112 0 7 chr1 57299025 57299319 -224894345 + AluSx SINE Alu 21 312 0 10214 140 36 27 chr1 57299319 57299534 -224894130 - L1 LINE L1 -6276 1289 1077 6730 178 24 41 chr1 57299527 57301105 -224892559 + L1M4 LINE L1 2659 4210 -1936 * 1058 145 23 23 chr1 57301109 57301281 -224892383 + AluJb SINE Alu 119 290 -22 953 73 59 0 chr1 57301281 57301433 -224892231 + L1MA3 LINE L1 6143 6299 -1 2393 168 20 24 chr1 57301464 57301958 -224891706 + L1MB3 LINE L1 5692 6183 0 775 229 12 25 chr1 57301972 57302217 -224891447 + L1M4 LINE L1 4316 4557 -1589 207 219 0 0 chr1 57302393 57302434 -224891230 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 214 357 36 9 chr1 57302440 57302552 -224891112 + L3 LINE CR1 1462 1576 -1 320 263 134 39 chr1 57302673 57302852 -224890812 + MLT1H LTR MaLR 29 224 -325 308 243 41 36 chr1 57302977 57303095 -224890569 + MLT1H LTR MaLR 413 538 -11 916 186 12 12 chr1 57303148 57303334 -224890330 + FAM SINE Alu 1 175 0 275 263 26 0 chr1 57303440 57303516 -224890148 + L1MC4a LINE L1 5845 5922 -1886 2322 227 67 68 chr1 57303678 57304470 -224889194 - L1MEc LINE L1 -4843 1553 762 2027 90 60 0 chr1 57304470 57304738 -224888926 - AluSg SINE Alu -26 284 1 2322 227 67 68 chr1 57304738 57304998 -224888666 - L1MEc LINE L1 -5634 762 503 282 225 88 0 chr1 57305109 57305189 -224888475 - MER103 DNA DNA -1 165 79 201 133 0 0 chr1 57305430 57305460 -224888204 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 386 283 144 21 chr1 57305470 57305640 -224888024 + MIR SINE MIR 6 196 -66 830 167 0 22 chr1 57306402 57306540 -224887124 + AluJo SINE Alu 1 135 -177 1764 154 7 4 chr1 57306585 57306858 -224886806 + AluJb SINE Alu 14 287 -25 1265 166 93 20 chr1 57307235 57307537 -224886127 + MER33 DNA MER1_type 1 324 0 1390 153 136 36 chr1 57307581 57307882 -224885782 + MER2 DNA MER2_type 1 331 -14 254 292 67 22 chr1 57308051 57308140 -224885524 + L2 LINE L2 3137 3229 -43 3298 140 26 5 chr1 57308942 57309520 -224884144 + L1MB3 LINE L1 5577 6166 -17 29476 70 6 2 chr1 57309875 57316002 -224877662 - L1PA5 LINE L1 0 6154 4 222 37 0 0 chr1 57316049 57316076 -224877588 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 916 135 0 0 chr1 57316079 57316205 -224877459 - AluSg/x SINE Alu -30 280 155 2179 76 0 14 chr1 57317383 57317706 -224875958 - AluSg SINE Alu 0 319 1 778 141 15 44 chr1 57318069 57318204 -224875460 - FLAM_C SINE Alu -1 132 2 1970 137 10 17 chr1 57318468 57318768 -224874896 + AluSx SINE Alu 1 298 -14 225 275 29 14 chr1 57319105 57319174 -224874490 + MIR SINE MIR 57 126 -82 265 289 272 0 chr1 57319742 57319937 -224873727 - MIR SINE MIR -7 255 3 26 0 0 0 chr1 57320345 57320371 -224873293 + AT_rich Low_complexity Low_complexity 1 26 0 1942 191 147 4 chr1 57320371 57320847 -224872817 - L1MD3 LINE L1 -2 7993 7450 356 357 91 0 chr1 57320978 57321132 -224872532 + MIR SINE MIR 20 187 -75 2211 92 7 0 chr1 57321142 57321425 -224872239 + AluSg SINE Alu 1 285 -25 387 0 0 0 chr1 57321426 57321469 -224872195 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2209 103 3 0 chr1 57321586 57321877 -224871787 + AluSc SINE Alu 1 292 -17 1248 172 4 26 chr1 57321881 57322113 -224871551 + AluJb SINE Alu 86 312 0 1686 85 0 18 chr1 57322488 57322711 -224870953 - AluSq SINE Alu -94 219 1 213 282 9 27 chr1 57324921 57325031 -224868633 + G-rich Low_complexity Low_complexity 4 111 0 34 0 0 0 chr1 57331761 57331795 -224861869 + AT_rich Low_complexity Low_complexity 1 34 0 1661 139 4 4 chr1 57334568 57334819 -224858845 + AluSx SINE Alu 40 290 -22 1865 147 3 17 chr1 57334865 57335164 -224858500 + AluJb SINE Alu 1 295 -17 497 370 6 6 chr1 57335354 57335527 -224858137 + MER5A DNA MER1_type 15 187 -2 559 339 6 6 chr1 57336207 57336378 -224857286 + L2 LINE L2 3102 3272 0 283 314 157 20 chr1 57336408 57336561 -224857103 - MIR SINE MIR -40 222 49 324 238 175 12 chr1 57337905 57338065 -224855599 + L2 LINE L2 2457 2642 -672 2302 113 3 0 chr1 57338200 57338502 -224855162 + AluSp SINE Alu 1 303 -10 788 324 92 32 chr1 57338668 57339267 -224854397 + HAL1 LINE L1 272 906 -1601 474 258 61 15 chr1 57339370 57339502 -224854162 - MIR SINE MIR -110 152 15 904 20 61 27 chr1 57340679 57340826 -224852838 + (GGAAA)n Simple_repeat Simple_repeat 4 155 0 313 203 0 0 chr1 57340918 57340977 -224852687 + L1ME2 LINE L1 5192 5250 -896 * 679 212 0 0 chr1 57340971 57341103 -224852561 + L1ME2 LINE L1 5850 5981 -181 514 160 0 0 chr1 57341145 57341220 -224852444 - AluS SINE Alu -237 76 2 292 138 46 46 chr1 57341221 57341286 -224852378 + L1ME2 LINE L1 6081 6145 -19 7049 9 0 0 chr1 57341305 57342080 -224851584 - L1HS LINE L1 0 6155 5381 1077 244 108 30 chr1 57342267 57342603 -224851061 + L1MEc LINE L1 1599 1978 -4418 2195 74 50 3 chr1 57342603 57342886 -224850778 - AluSg SINE Alu -14 296 1 1077 244 108 30 chr1 57342886 57342984 -224850680 + L1MEc LINE L1 1978 2067 -4329 488 326 51 25 chr1 57343028 57343132 -224850532 + MLT2F LTR ERVL 3 103 -560 2236 109 6 6 chr1 57343132 57343444 -224850220 + AluSx SINE Alu 1 312 0 488 326 51 25 chr1 57343444 57343575 -224850089 + MLT2F LTR ERVL 103 244 -419 2233 213 50 29 chr1 57343599 57344218 -224849446 + L1M4 LINE L1 3699 4330 -1816 439 240 70 65 chr1 57344258 57344487 -224849177 + L1MA5 LINE L1 1160 1389 -5820 * 1013 157 0 64 chr1 57344485 57344592 -224849072 + L1MA5 LINE L1 2913 3025 -4184 1503 147 16 80 chr1 57344592 57344906 -224848758 + AluJb SINE Alu 1 294 -18 1013 157 0 64 chr1 57344906 57344997 -224848667 + L1MA5 LINE L1 3025 3120 -4089 2222 106 3 3 chr1 57344997 57345289 -224848375 + AluSx SINE Alu 1 292 -20 2229 116 3 3 chr1 57345289 57345600 -224848064 + AluSx SINE Alu 1 311 -1 1013 157 0 64 chr1 57345600 57345635 -224848029 + L1MA5 LINE L1 3118 3133 -4076 2139 113 3 7 chr1 57345652 57345952 -224847712 + AluSx SINE Alu 5 303 -9 9531 165 77 29 chr1 57345954 57346249 -224847415 + L1MA5 LINE L1 4240 4519 -2843 1414 198 39 32 chr1 57346249 57346557 -224847107 + AluJo SINE Alu 1 310 -2 9531 165 77 29 chr1 57346557 57347813 -224845851 + L1MA5 LINE L1 4519 5712 -1650 2189 132 0 0 chr1 57347813 57348117 -224845547 + AluSq SINE Alu 1 304 -9 9531 165 77 29 chr1 57348117 57349057 -224844607 + L1MA5 LINE L1 5712 6908 -454 1512 203 10 7 chr1 57349057 57349357 -224844307 + AluJo SINE Alu 12 312 0 9531 165 77 29 chr1 57349357 57349836 -224843828 + L1MA5 LINE L1 6908 7362 0 2443 202 55 26 chr1 57349821 57350386 -224843278 + L1MB3 LINE L1 5596 6176 -7 * 1525 109 160 12 chr1 57350411 57350667 -224842997 + AluSg SINE Alu 1 294 -16 364 261 57 57 chr1 57350670 57350827 -224842837 + L1ME3A LINE L1 5905 6061 -109 836 153 59 6 chr1 57350827 57350997 -224842667 - MLT1B LTR MaLR -48 342 164 276 269 32 11 chr1 57351015 57351108 -224842556 + L1ME3A LINE L1 6043 6137 -33 2229 113 0 3 chr1 57351614 57351915 -224841749 + AluSg SINE Alu 1 300 -10 1556 167 91 3 chr1 57351927 57352214 -224841450 + AluSx SINE Alu 1 312 0 380 299 72 0 chr1 57352774 57352871 -224840793 - L2 LINE L2 -15 3257 3154 449 262 134 12 chr1 57353502 57353666 -224839998 + MIR SINE MIR 20 203 -59 1570 65 0 0 chr1 57353666 57353851 -224839813 + AluY SINE Alu 1 185 -126 605 65 26 0 chr1 57353851 57353928 -224839736 + AluY SINE Alu 218 296 -15 845 257 31 21 chr1 57354024 57354356 -224839308 - L1MEc LINE L1 -3754 2461 2167 2276 94 0 44 chr1 57354461 57354702 -224838962 - THE1A LTR MaLR 0 355 127 2083 101 10 34 chr1 57354702 57355041 -224838623 + AluY SINE Alu 5 336 0 2276 94 0 44 chr1 57355041 57355116 -224838548 - THE1A LTR MaLR -228 127 50 932 86 8 8 chr1 57355130 57355258 -224838406 - THE1A LTR MaLR -227 128 1 12110 96 17 1 chr1 57355258 57356814 -224836850 - THE1A-int LTR MaLR 0 1580 1 2480 125 11 3 chr1 57356814 57357166 -224836498 - THE1A LTR MaLR 0 355 1 1020 257 155 43 chr1 57357169 57357553 -224836111 - L1MEc LINE L1 -4256 2140 1800 1808 153 25 7 chr1 57357553 57357835 -224835829 + AluJo SINE Alu 1 287 -25 1020 257 155 43 chr1 57357835 57358186 -224835478 - L1MEc LINE L1 -4596 1800 1323 480 123 235 0 chr1 57358491 57358572 -224835092 - AluJ/FLAM SINE Alu -211 101 2 2071 135 3 7 chr1 57358587 57358884 -224834780 - AluSx SINE Alu -16 296 1 286 281 73 0 chr1 57359001 57359097 -224834567 - L2 LINE L2 -22 3250 3148 281 368 43 8 chr1 57359248 57359365 -224834299 - L2 LINE L2 -16 3256 3136 418 302 321 9 chr1 57360163 57360726 -224832938 + L3 LINE CR1 822 1560 -17 254 300 0 14 chr1 57360920 57360990 -224832674 + L2 LINE L2 3244 3312 -1 6020 201 53 13 chr1 57361609 57362945 -224830719 - L1P LINE L1 -913 5233 3844 353 188 84 45 chr1 57362946 57363015 -224830649 - L1MC5 LINE L1 -181 7780 7715 2009 158 0 7 chr1 57363015 57363325 -224830339 - AluJb SINE Alu -4 308 1 353 188 84 45 chr1 57363325 57363409 -224830255 - L1MC5 LINE L1 -246 7715 7621 711 195 25 0 chr1 57363552 57363670 -224829994 - FLAM_C SINE Alu -20 123 3 1352 184 6 96 chr1 57364137 57364310 -224829354 - AluSx SINE Alu -5 307 120 216 0 0 0 chr1 57364310 57364334 -224829330 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1352 184 6 96 chr1 57364334 57364351 -224829313 - AluSx SINE Alu -192 120 103 1904 114 4 26 chr1 57364351 57364624 -224829040 - AluSq SINE Alu -41 272 6 1352 184 6 96 chr1 57364624 57364764 -224828900 - AluSx SINE Alu -209 103 6 410 335 48 24 chr1 57365122 57365331 -224828333 + MIR SINE MIR 30 243 -19 948 130 0 86 chr1 57365331 57365493 -224828171 + AluJo SINE Alu 1 148 -164 257 87 0 43 chr1 57365559 57365605 -224828059 + (GGGAA)n Simple_repeat Simple_repeat 2 45 0 1488 229 86 60 chr1 57365698 57366200 -224827464 - LTR40a LTR ERVL -4 515 1 1301 213 32 7 chr1 57366200 57366477 -224827187 - HERVL40 LTR ERVL 0 5530 5247 277 171 14 43 chr1 57366416 57366486 -224827178 - MER89-int LTR ERV1 -299 6502 6435 * 335 281 37 79 chr1 57366508 57366672 -224826992 - HERVL40 LTR ERVL -349 4674 4518 462 299 82 17 chr1 57366937 57367168 -224826496 - HERVL40 LTR ERVL -323 2714 2469 7929 228 39 38 chr1 57367377 57369183 -224824481 - HERVL40 LTR ERVL -688 4660 2036 1613 233 69 20 chr1 57369303 57369693 -224823971 - HERVL40 LTR ERVL -5121 409 1 1797 205 63 23 chr1 57369694 57370124 -224823540 - LTR40b LTR ERVL -2 460 14 181 148 0 0 chr1 57370172 57370199 -224823465 + L2 LINE L2 3210 3236 -36 248 319 178 15 chr1 57371016 57371151 -224822513 - L2 LINE L2 -4 3268 3112 2594 126 11 91 chr1 57371363 57371630 -224822034 - MSTB LTR MaLR -2 424 208 2274 115 23 0 chr1 57371630 57371935 -224821729 - AluSx SINE Alu 0 312 1 2594 126 11 91 chr1 57371935 57372128 -224821536 - MSTB LTR MaLR -218 208 1 191 255 0 0 chr1 57372175 57372222 -224821442 - L3b LINE CR1 -3 1580 1534 1084 197 5 5 chr1 57372224 57372412 -224821252 + MER5A DNA MER1_type 1 188 -1 1062 194 68 5 chr1 57372421 57372627 -224821037 - MER20 DNA MER1_type 0 219 1 930 226 93 0 chr1 57372635 57372839 -224820825 - MER58A DNA MER1_type 0 224 2 1288 164 138 65 chr1 57372974 57373249 -224820415 - AluJo SINE Alu -7 295 1 197 279 15 15 chr1 57373252 57373326 -224820338 - MIR SINE MIR -65 143 74 945 209 60 5 chr1 57373507 57373708 -224819956 - MER58A DNA MER1_type -12 212 1 1994 141 0 10 chr1 57374058 57374363 -224819301 + AluSx SINE Alu 1 302 -10 346 283 0 11 chr1 57374380 57374472 -224819192 + MIR3 SINE MIR 85 175 -33 582 248 253 10 chr1 57374508 57374710 -224818954 - MIR SINE MIR 0 262 12 10360 58 43 14 chr1 57375194 57376554 -224817110 + SVA Other Other 11 1386 0 2193 115 0 13 chr1 57376562 57376876 -224816788 + AluSq SINE Alu 1 310 -3 2203 58 4 0 chr1 57377060 57377320 -224816344 - AluY SINE Alu -14 297 37 1401 157 25 110 chr1 57377504 57377650 -224816014 + AluJo SINE Alu 1 107 -205 2002 129 13 13 chr1 57377650 57377952 -224815712 - AluSx SINE Alu -10 302 1 1401 157 25 110 chr1 57377952 57378123 -224815541 + AluJo SINE Alu 107 291 -21 22 0 0 0 chr1 57378600 57378622 -224815042 + AT_rich Low_complexity Low_complexity 1 22 0 3394 144 30 34 chr1 57378657 57379281 -224814383 + L1MB3 LINE L1 5555 6176 -7 2289 94 3 0 chr1 57379776 57380087 -224813577 + AluSp SINE Alu 1 312 0 2391 74 3 7 chr1 57380452 57380761 -224812903 - AluY SINE Alu -3 308 1 772 180 8 0 chr1 57381123 57381245 -224812419 + FLAM_C SINE Alu 1 123 -10 29 28 0 0 chr1 57381245 57381281 -224812383 + AT_rich Low_complexity Low_complexity 1 36 0 2517 40 0 10 chr1 57381503 57381802 -224811862 + AluY SINE Alu 1 296 -15 23 0 0 0 chr1 57381802 57381825 -224811839 + AT_rich Low_complexity Low_complexity 1 23 0 228 67 0 0 chr1 57382988 57383018 -224810646 + (CCG)n Simple_repeat Simple_repeat 1 30 0 228 149 0 0 chr1 57383026 57383073 -224810591 + (CGGG)n Simple_repeat Simple_repeat 2 48 0 31 92 0 0 chr1 57383789 57383876 -224809788 + GC_rich Low_complexity Low_complexity 1 87 0 21 57 0 0 chr1 57388126 57388161 -224805503 + AT_rich Low_complexity Low_complexity 1 35 0 366 305 40 13 chr1 57389047 57389198 -224804466 - MIR SINE MIR -56 206 52 388 281 171 0 chr1 57389302 57389466 -224804198 + MIR SINE MIR 69 260 -2 294 293 167 13 chr1 57389947 57390097 -224803567 + MIR SINE MIR 3 175 -87 22 35 0 0 chr1 57390097 57390126 -224803538 + AT_rich Low_complexity Low_complexity 1 29 0 393 306 139 52 chr1 57390625 57390821 -224802843 + L1MEd LINE L1 3 181 -5938 1584 185 75 72 chr1 57390821 57391210 -224802454 - MLT1B LTR MaLR 0 390 1 393 306 139 52 chr1 57391210 57391359 -224802305 + L1MEd LINE L1 181 378 -5741 * 772 185 29 29 chr1 57391358 57391524 -224802140 - L1M4 LINE L1 -798 5348 5180 774 185 15 0 chr1 57391524 57391654 -224802010 - FLAM_A SINE Alu -1 132 1 772 185 29 29 chr1 57391654 57391692 -224801972 - L1M4 LINE L1 -965 5181 5144 2154 151 64 7 chr1 57391721 57392126 -224801538 + L1MB7 LINE L1 5757 6184 0 349 288 120 0 chr1 57392255 57392380 -224801284 + L2 LINE L2 3166 3305 -8 1234 242 131 71 chr1 57392388 57392739 -224800925 + L1MC4 LINE L1 7136 7465 -577 2212 97 0 13 chr1 57392739 57393037 -224800627 - AluSx SINE Alu -8 304 11 1234 242 131 71 chr1 57393037 57393050 -224800614 + L1MC4 LINE L1 7465 7476 -566 2368 76 3 0 chr1 57393050 57393341 -224800323 - AluSp SINE Alu -16 297 6 1234 242 131 71 chr1 57393341 57393633 -224800031 + L1MC4 LINE L1 7476 7832 -210 * 1951 225 129 33 chr1 57393624 57394020 -224799644 + L1M4 LINE L1 3179 3536 -2610 1950 125 10 34 chr1 57394020 57394347 -224799317 - AluSx SINE Alu 0 312 2 1951 225 129 33 chr1 57394347 57394654 -224799010 + L1M4 LINE L1 3536 3812 -2334 2223 113 0 0 chr1 57394654 57394947 -224798717 - AluSg SINE Alu -17 293 1 1951 225 129 33 chr1 57394947 57395046 -224798618 + L1M4 LINE L1 3812 4138 -2008 376 158 0 0 chr1 57395088 57395158 -224798506 + L1ME LINE L1 5592 5661 -460 342 263 67 127 chr1 57395162 57395462 -224798202 + L2 LINE L2 2260 2541 -773 2056 126 3 0 chr1 57396028 57396321 -224797343 - AluSx SINE Alu -18 294 1 2352 87 3 6 chr1 57396356 57396668 -224796996 - AluY SINE Alu 0 311 1 38 22 0 0 chr1 57397192 57397237 -224796427 + AT_rich Low_complexity Low_complexity 1 45 0 506 214 9 105 chr1 57397274 57397351 -224796313 + LTR33 LTR ERVL 332 415 -106 2388 93 0 10 chr1 57397351 57397664 -224796000 - AluSg SINE Alu 0 310 1 506 214 9 105 chr1 57397664 57397712 -224795952 + LTR33 LTR ERVL 415 466 -55 2542 80 0 0 chr1 57397712 57398024 -224795640 - AluSx SINE Alu 0 312 1 506 214 9 105 chr1 57398024 57398107 -224795557 + LTR33 LTR ERVL 466 521 0 377 236 138 8 chr1 57398327 57398450 -224795214 + L2 LINE L2 3163 3301 -12 358 250 87 39 chr1 57398452 57398556 -224795108 - L2 LINE L2 -1 3312 3204 273 204 167 45 chr1 57398625 57398757 -224794907 + MER103 DNA DNA 3 150 -16 718 176 0 78 chr1 57398803 57398945 -224794719 + FLAM_C SINE Alu 1 131 -12 1948 116 4 0 chr1 57399152 57399420 -224794244 + AluSx SINE Alu 41 309 -3 786 145 15 30 chr1 57399693 57399824 -224793840 - FLAM_C SINE Alu -2 131 3 335 234 178 1 chr1 57399824 57399950 -224793714 + MIR SINE MIR 55 206 -56 4926 143 99 92 chr1 57399961 57400589 -224793075 + L1MC3 LINE L1 6472 7198 -587 256 218 81 35 chr1 57400589 57400676 -224792988 + MLT1F1 LTR MaLR 35 125 -442 4926 143 99 92 chr1 57400676 57401076 -224792588 + L1MC3 LINE L1 7198 7594 -191 1205 111 29 29 chr1 57401076 57401283 -224792381 + L1MC2 LINE L1 6137 6343 -1 449 258 58 63 chr1 57401436 57401626 -224792038 + MIR SINE MIR 2 190 -72 1181 293 169 20 chr1 57401726 57402372 -224791292 - L2 LINE L2 -940 2374 1633 198 71 0 0 chr1 57402410 57402438 -224791226 + (TTA)n Simple_repeat Simple_repeat 2 29 0 4517 123 23 34 chr1 57402867 57403126 -224790538 + L1MA2 LINE L1 4133 4393 -1911 2366 93 0 3 chr1 57403126 57403428 -224790236 + AluSg SINE Alu 1 301 -9 4517 123 23 34 chr1 57403428 57404382 -224789282 + L1MA2 LINE L1 4393 5355 -949 2262 76 7 10 chr1 57404382 57404672 -224788992 + AluSg1 SINE Alu 7 295 -14 4517 123 23 34 chr1 57404672 57404705 -224788959 + L1MA2 LINE L1 5355 5387 -917 2247 102 10 0 chr1 57404705 57405000 -224788664 + AluSx SINE Alu 1 298 -14 4517 123 23 34 chr1 57405000 57405831 -224787833 + L1MA2 LINE L1 5387 6304 0 724 167 17 8 chr1 57405979 57406099 -224787565 - FLAM_A SINE Alu -11 122 2 2594 187 117 16 chr1 57406255 57406817 -224786847 + MER97c DNA MER1_type? 1 619 -471 264 330 29 12 chr1 57406942 57407115 -224786549 + Zaphod DNA AcHobo 3506 3681 -350 1681 154 45 14 chr1 57407179 57407471 -224786193 - AluJb SINE Alu -11 301 1 25 75 0 0 chr1 57407481 57407534 -224786130 + AT_rich Low_complexity Low_complexity 1 53 0 403 257 7 37 chr1 57407584 57407720 -224785944 + MER97c DNA MER1_type? 958 1089 -1 1707 157 45 0 chr1 57408064 57408350 -224785314 - AluSx SINE Alu -13 299 1 1564 251 110 28 chr1 57408583 57409165 -224784499 - L2 LINE L2 -1922 1392 763 574 273 31 40 chr1 57409165 57409392 -224784272 - L2 LINE L2 -3088 226 2 17118 104 10 31 chr1 57410690 57414291 -224779373 + L1P3 LINE L1 1 3600 -2861 438 252 46 10 chr1 57414504 57414772 -224778892 + L1ME LINE L1 5189 5440 -724 2370 119 0 0 chr1 57414823 57415134 -224778530 + AluSx SINE Alu 1 311 -1 316 286 78 31 chr1 57415910 57416165 -224777499 + L1ME3 LINE L1 1175 1441 -4982 824 149 22 8 chr1 57416172 57416306 -224777358 - AluSq/x SINE Alu -177 136 1 21 71 0 0 chr1 57416308 57416350 -224777314 + AT_rich Low_complexity Low_complexity 1 42 0 872 282 89 56 chr1 57416438 57416714 -224776950 + L1ME3 LINE L1 1782 2047 -5075 1724 181 3 17 chr1 57416714 57417006 -224776658 + AluJb SINE Alu 1 288 -24 872 282 89 56 chr1 57417006 57417302 -224776362 + L1ME3 LINE L1 2047 2332 -4790 2135 121 0 13 chr1 57417302 57417600 -224776064 + AluSx SINE Alu 1 294 -18 872 282 89 56 chr1 57417600 57417823 -224775841 + L1ME3 LINE L1 2332 2546 -4576 1922 131 20 103 chr1 57417823 57418105 -224775559 + MER47A DNA MER2_type 1 305 -2018 2479 67 0 0 chr1 57418105 57418403 -224775261 - AluY SINE Alu -13 298 1 1922 131 20 103 chr1 57418403 57418434 -224775230 + MER47A DNA MER2_type 305 278 -2045 1692 183 0 21 chr1 57418434 57418724 -224774940 - AluJb SINE Alu -28 284 1 1922 131 20 103 chr1 57418724 57418807 -224774857 + MER47A DNA MER2_type 277 365 -1 872 282 89 56 chr1 57418807 57418917 -224774747 + L1ME3 LINE L1 2546 2719 -4403 1303 178 36 7 chr1 57419006 57419315 -224774349 + MER33 DNA MER1_type 7 324 0 1192 152 43 9 chr1 57419325 57419535 -224774129 + MER20 DNA MER1_type 3 219 0 543 285 78 0 chr1 57419650 57419831 -224773833 + L1ME3 LINE L1 2903 3068 -3873 2018 84 29 117 chr1 57419831 57420174 -224773490 + AluSq SINE Alu 1 313 0 543 285 78 0 chr1 57420174 57420200 -224773464 + L1ME3 LINE L1 3068 3091 -3850 2019 154 3 7 chr1 57420200 57420499 -224773165 + AluSq SINE Alu 6 303 -10 543 285 78 0 chr1 57420499 57420674 -224772990 + L1ME3 LINE L1 3091 3282 -3659 670 92 0 38 chr1 57420674 57420805 -224772859 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 4174 245 103 21 chr1 57420843 57421566 -224772098 + L1ME3 LINE L1 4281 4944 -2013 2353 72 3 13 chr1 57421566 57421871 -224771793 + AluSp SINE Alu 1 302 -11 4174 245 103 21 chr1 57421871 57422714 -224770950 + L1ME3 LINE L1 4944 5717 -1240 1910 110 4 4 chr1 57422714 57422978 -224770686 + AluSq SINE Alu 42 305 -8 4174 245 103 21 chr1 57422978 57423859 -224769805 + L1ME3 LINE L1 5717 6936 -21 435 379 49 62 chr1 57423892 57424426 -224769238 + L2 LINE L2 2730 3257 -15 772 204 44 102 chr1 57426192 57426467 -224767197 - MIR SINE MIR -2 260 2 307 295 83 13 chr1 57426554 57426710 -224766954 - L3 LINE CR1 -7 1570 1404 226 222 0 0 chr1 57426740 57426785 -224766879 - Alu SINE Alu -11 291 247 672 282 61 92 chr1 57426785 57427438 -224766226 - L3 LINE CR1 -238 1339 707 2312 107 3 0 chr1 57427482 57427790 -224765874 - AluSx SINE Alu -3 309 1 834 145 8 15 chr1 57427987 57428118 -224765546 - FLAM_C SINE Alu -3 130 1 1707 168 0 49 chr1 57428225 57428553 -224765111 + AluJo SINE Alu 1 312 0 803 144 108 93 chr1 57428712 57428832 -224764832 + MSTA LTR MaLR 232 358 -70 7463 51 8 0 chr1 57428832 57430549 -224763115 - L1PA6 LINE L1 -2 6152 4429 803 144 108 93 chr1 57430549 57430622 -224763042 + MSTA LTR MaLR 358 428 0 309 268 72 51 chr1 57430666 57431097 -224762567 + L1MDa LINE L1 1511 2014 -887 3334 234 72 64 chr1 57431116 57432261 -224761403 + L1M4c LINE L1 1243 2378 -4004 2239 117 3 0 chr1 57432261 57432560 -224761104 - AluSp SINE Alu -11 302 3 3334 234 72 64 chr1 57432560 57432853 -224760811 + L1M4c LINE L1 2378 2667 -3715 1884 169 3 3 chr1 57432853 57433149 -224760515 + AluJb SINE Alu 1 296 -16 3334 234 72 64 chr1 57433149 57433835 -224759829 + L1M4c LINE L1 2667 3601 -2781 1476 199 41 0 chr1 57433835 57434126 -224759538 + AluSx SINE Alu 5 307 -5 3334 234 72 64 chr1 57434126 57434521 -224759143 + L1M4c LINE L1 3601 3991 -2391 5155 119 12 13 chr1 57434524 57435166 -224758498 - L1PA16 LINE L1 -16 6150 5508 1855 169 3 22 chr1 57435166 57435479 -224758185 - AluJb SINE Alu -5 307 1 5155 119 12 13 chr1 57435479 57435640 -224758024 - L1PA16 LINE L1 -658 5508 5348 2220 121 0 3 chr1 57435640 57435938 -224757726 - AluSx SINE Alu -15 297 1 5155 119 12 13 chr1 57435938 57436460 -224757204 - L1PA16 LINE L1 -818 5348 4806 379 214 95 62 chr1 57436583 57436727 -224756937 + MER5C DNA MER1_type 108 263 -61 1747 125 14 49 chr1 57436727 57436852 -224756812 + AluSx SINE Alu 20 148 -164 2225 100 7 10 chr1 57436852 57437153 -224756511 + AluSx SINE Alu 1 300 -12 1747 125 14 49 chr1 57437153 57437315 -224756349 + AluSx SINE Alu 148 297 -15 379 214 95 62 chr1 57437315 57437380 -224756284 + MER5C DNA MER1_type 263 324 0 466 78 0 26 chr1 57437821 57437898 -224755766 - MER1B DNA MER1_type 0 329 255 1361 131 15 0 chr1 57437904 57438110 -224755554 - MER1B DNA MER1_type -88 209 1 1225 256 147 32 chr1 57438331 57438890 -224754774 + LTR50 LTR ERVL 129 751 -44 2055 118 7 0 chr1 57438892 57439219 -224754445 + AluSx SINE Alu 1 329 0 2125 96 0 31 chr1 57439902 57440215 -224753449 - AluSq SINE Alu 0 304 1 645 144 54 0 chr1 57441060 57441171 -224752493 + AluJb SINE Alu 1 117 -195 201 121 0 0 chr1 57441621 57441654 -224752010 + (CA)n Simple_repeat Simple_repeat 1 33 0 1318 151 13 22 chr1 57442018 57442250 -224751414 - AluJb SINE Alu -19 293 64 1359 160 46 71 chr1 57442415 57442697 -224750967 + AluJb SINE Alu 1 275 -37 411 295 120 23 chr1 57442886 57443144 -224750520 + L1M4 LINE L1 3588 3870 -2276 252 250 24 36 chr1 57443203 57443287 -224750377 + LTR67 LTR ERVL 112 194 -363 780 195 40 72 chr1 57444499 57444697 -224748967 - L1M4c LINE L1 -4831 1551 1251 2207 223 15 36 chr1 57444709 57445325 -224748339 + L1MC4a LINE L1 1154 1740 -4644 2032 252 22 29 chr1 57445333 57445472 -224748192 + L1MC4a LINE L1 5661 5799 -2245 2008 137 0 3 chr1 57445472 57445764 -224747900 + AluSx SINE Alu 1 291 -21 2032 252 22 29 chr1 57445764 57446256 -224747408 + L1MC4a LINE L1 5799 6288 -1756 1926 211 89 35 chr1 57446268 57446775 -224746889 + MLT1F LTR MaLR 1 534 -8 1006 224 47 52 chr1 57446787 57447193 -224746471 + L1MC4a LINE L1 6334 6737 -1307 278 158 18 35 chr1 57447235 57447292 -224746372 + L1MC4a LINE L1 6853 6908 -1136 1431 270 26 143 chr1 57447292 57447574 -224746090 + L1MC4 LINE L1 7064 7377 -901 2225 95 3 0 chr1 57447574 57447857 -224745807 - AluSc SINE Alu -25 284 1 1431 270 26 143 chr1 57447857 57448127 -224745537 + L1MC4 LINE L1 7377 7677 -601 1734 177 20 0 chr1 57448127 57448421 -224745243 + AluSq SINE Alu 1 300 -13 1431 270 26 143 chr1 57448421 57448503 -224745161 + L1MC4 LINE L1 7677 7767 -511 2203 138 0 0 chr1 57448503 57448815 -224744849 + AluJb SINE Alu 1 312 0 1431 270 26 143 chr1 57448815 57448957 -224744707 + L1MC4 LINE L1 7767 7924 -354 1954 146 152 13 chr1 57448957 57449333 -224744331 - MSTA LTR MaLR 0 428 1 1431 270 26 143 chr1 57449333 57449765 -224743899 + L1MC4 LINE L1 7924 8133 -145 236 250 47 0 chr1 57449874 57449938 -224743726 + L1MC4 LINE L1 8173 8239 -39 1715 147 42 26 chr1 57449941 57450248 -224743416 - AluJo SINE Alu 0 312 1 1146 225 42 16 chr1 57450248 57450555 -224743109 - MLT1A2 LTR MaLR -58 316 2 1027 173 0 0 chr1 57451164 57451326 -224742338 + FRAM SINE Alu 1 162 -4 1996 138 0 0 chr1 57451452 57451763 -224741901 - AluSx SINE Alu 0 313 3 1280 213 37 41 chr1 57452014 57452282 -224741382 + AluJo SINE Alu 14 280 -32 243 61 0 0 chr1 57452287 57452320 -224741344 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 22 0 0 0 chr1 57452320 57452342 -224741322 + AT_rich Low_complexity Low_complexity 1 22 0 474 266 105 33 chr1 57452387 57452471 -224741193 - MIR SINE MIR -3 259 182 2304 96 0 0 chr1 57452471 57452762 -224740902 - AluSx SINE Alu -21 291 1 474 266 105 33 chr1 57452762 57452896 -224740768 - MIR SINE MIR -80 182 27 2289 84 0 10 chr1 57453098 57453394 -224740270 + AluSq SINE Alu 1 293 -20 2576 150 52 10 chr1 57453394 57454461 -224739203 - L1PA16 LINE L1 -10 6156 4987 2504 117 38 40 chr1 57454577 57455023 -224738641 + MER65A LTR ERV1 1 445 0 653 227 82 27 chr1 57455363 57455619 -224738045 + L1MC/D LINE L1 5337 5606 -2202 14970 122 14 23 chr1 57455619 57455995 -224737669 - Tigger1 DNA MER2_type 0 2418 2040 1977 175 0 6 chr1 57455995 57456309 -224737355 - AluJo SINE Alu 0 312 1 14970 122 14 23 chr1 57456309 57458369 -224735295 - Tigger1 DNA MER2_type -378 2040 4 4540 185 81 18 chr1 57458375 57458727 -224734937 - L1 LINE L1 -1218 4928 4600 2340 96 3 0 chr1 57458727 57459030 -224734634 - AluSp SINE Alu -9 304 1 4540 185 81 18 chr1 57459030 57459779 -224733885 - L1 LINE L1 -1546 4600 3758 1320 130 40 5 chr1 57509779 57509979 -224683685 + AluJo SINE Alu 66 272 -40 670 118 20 20 chr1 57510012 57510164 -224683500 - Charlie1 DNA MER1_type -90 2671 2520 1107 85 0 0 chr1 57510241 57510371 -224683293 + AluSq/x SINE Alu 1 130 -182 1204 75 0 0 chr1 57510386 57510533 -224683131 + HERV17 LTR ERV1 2563 2709 -5917 6900 52 3 6 chr1 57510536 57511382 -224682282 + HERV17 LTR ERV1 1173 2016 -6610 * 10987 45 18 1 chr1 57511365 57512669 -224680995 + HERV17 LTR ERV1 2430 3754 -4872 5086 35 30 0 chr1 57512648 57512859 -224680805 + HERV17 LTR ERV1 5405 5608 -3018 * 195 42 0 0 chr1 57512859 57512883 -224680781 + (GGAAA)n Simple_repeat Simple_repeat 2 25 0 5086 35 30 0 chr1 57512883 57513268 -224680396 + HERV17 LTR ERV1 5608 6019 -2607 324 26 0 0 chr1 57513261 57513300 -224680364 + HERV17 LTR ERV1 7510 7548 -1078 * 2353 62 3 0 chr1 57513290 57513581 -224680083 + HERV17 LTR ERV1 8335 8626 0 2298 116 0 6 chr1 57513581 57513909 -224679755 + LTR17 LTR ERV1 1 326 -454 41 0 0 0 chr1 57513909 57513950 -224679714 + AT_rich Low_complexity Low_complexity 1 41 0 245 206 16 16 chr1 57514104 57514167 -224679497 + MIR SINE MIR 78 140 -122 1074 167 0 11 chr1 57514301 57514512 -224679152 + AluJo SINE Alu 109 312 0 534 184 10 10 chr1 57514658 57514761 -224678903 - U13 snRNA snRNA 0 104 2 2183 205 17 0 chr1 57514911 57515325 -224678339 + MER63 DNA MER1_type 637 1057 -4 282 336 68 7 chr1 57515322 57515468 -224678196 + MIR SINE MIR 107 261 -1 * 291 241 51 0 chr1 57515582 57515661 -224678003 + MIR SINE MIR 180 262 0 1869 146 7 4 chr1 57515700 57515980 -224677684 + AluSx SINE Alu 1 281 -31 182 0 33 33 chr1 57515980 57516010 -224677654 + (CAAAA)n Simple_repeat Simple_repeat 1 170 0 224 350 0 0 chr1 57516269 57516329 -224677335 + L2 LINE L2 3126 3185 -87 2168 106 3 3 chr1 57516386 57516678 -224676986 - AluSg SINE Alu -12 298 7 2196 125 3 0 chr1 57516918 57517221 -224676443 + AluSp SINE Alu 1 304 -9 1636 158 26 4 chr1 57517228 57517493 -224676171 + AluJo SINE Alu 1 271 -41 843 147 0 16 chr1 57517509 57517638 -224676026 + AluJo SINE Alu 1 127 -185 418 170 107 9 chr1 57517651 57517763 -224675901 + L1MB3 LINE L1 6003 6125 -58 1025 138 48 24 chr1 57517764 57517931 -224675733 + AluJo SINE Alu 129 299 -13 649 113 33 119 chr1 57518118 57518220 -224675444 + Tigger3(Golem) DNA MER2_type 99 185 -1046 1983 110 14 27 chr1 57518220 57518512 -224675152 - AluSq SINE Alu -25 288 1 649 113 33 119 chr1 57518512 57518560 -224675104 + Tigger3(Golem) DNA MER2_type 185 236 -995 * 1757 118 233 10 chr1 57518554 57518971 -224674693 + Tigger3(Golem) DNA MER2_type 2472 2981 -48 189 339 71 16 chr1 57519003 57519130 -224674534 - L2 LINE L2 -307 3006 2873 2308 98 0 0 chr1 57519219 57519506 -224674158 - AluSc SINE Alu -22 287 1 241 267 0 0 chr1 57519779 57519839 -224673825 - Charlie8 DNA MER1_type -990 1427 1368 622 226 42 26 chr1 57519844 57520034 -224673630 - Charlie8 DNA MER1_type -2197 220 28 254 330 26 9 chr1 57521470 57521585 -224672079 + MIR SINE MIR 33 149 -59 473 283 135 63 chr1 57523080 57523398 -224670266 - L2 LINE L2 -1 3271 2931 345 246 0 88 chr1 57523562 57523676 -224669988 + MIR3 SINE MIR 94 197 -11 2312 87 14 0 chr1 57524133 57524420 -224669244 + AluSx SINE Alu 1 291 -21 1879 134 0 69 chr1 57524427 57524747 -224668917 + AluJo SINE Alu 1 298 -14 1008 180 62 11 chr1 57524836 57525014 -224668650 + AluJo SINE Alu 1 187 -125 6091 85 22 4 chr1 57525119 57526075 -224667589 + L1M1 LINE L1 2241 3213 -4352 5278 130 42 11 chr1 57526061 57526553 -224667111 + L1MA5A LINE L1 5291 5766 -531 * 2100 124 17 0 chr1 57526553 57526851 -224666813 + AluSx SINE Alu 1 303 -9 5278 130 42 11 chr1 57526851 57527335 -224666329 + L1MA5A LINE L1 5766 6297 0 2090 144 3 3 chr1 57527341 57527653 -224666011 + AluSx SINE Alu 1 312 0 1856 172 0 0 chr1 57527654 57527842 -224665822 + L1MA4 LINE L1 5770 5949 -351 742 167 0 0 chr1 57527842 57527980 -224665684 + L1MA4 LINE L1 6156 6293 -7 1856 172 0 0 chr1 57527980 57528216 -224665448 + L1MA4 LINE L1 5949 6174 -126 2593 46 0 0 chr1 57528216 57528519 -224665145 + AluY SINE Alu 1 303 -8 2099 131 0 41 chr1 57528524 57528844 -224664820 + AluJb SINE Alu 1 307 -5 1856 172 0 0 chr1 57528844 57528954 -224664710 + L1MA4 LINE L1 6177 6294 -6 185 257 57 14 chr1 57529302 57529372 -224664292 - L2 LINE L2 -1927 1387 1315 386 164 63 138 chr1 57529809 57529880 -224663784 + LTR45B LTR ERV1 343 397 -92 1701 193 0 22 chr1 57529880 57530191 -224663473 + AluJb SINE Alu 1 304 -8 386 164 63 138 chr1 57530191 57530278 -224663386 + LTR45B LTR ERV1 397 489 0 2219 114 7 0 chr1 57530324 57530622 -224663042 + AluSq SINE Alu 1 300 -13 391 237 53 8 chr1 57530818 57530949 -224662715 - L1M4 LINE L1 -3146 3000 2864 442 231 0 0 chr1 57530976 57531080 -224662584 - L1M4 LINE L1 -3423 2723 2620 718 207 125 43 chr1 57531087 57531319 -224662345 - MLT1J1 LTR MaLR -180 266 16 1007 269 113 19 chr1 57531327 57532118 -224661546 - L1M4 LINE L1 -2537 3609 2745 1785 197 0 0 chr1 57532118 57532405 -224661259 + AluJo SINE Alu 1 290 -22 351 0 0 0 chr1 57532405 57532444 -224661220 + (CA)n Simple_repeat Simple_repeat 2 40 0 1785 197 0 0 chr1 57532444 57532466 -224661198 + AluJo SINE Alu 289 310 -2 2081 138 0 3 chr1 57532525 57532829 -224660835 - AluSx SINE Alu -9 303 1 253 328 62 23 chr1 57532846 57532974 -224660690 - MIR SINE MIR -57 205 73 186 379 0 39 chr1 57533084 57533187 -224660477 + L2 LINE L2 3210 3308 -5 180 222 91 81 chr1 57533612 57533711 -224659953 - L2 LINE L2 -1529 1785 1686 2020 119 23 29 chr1 57533947 57534257 -224659407 - AluSx SINE Alu 0 312 5 210 283 43 65 chr1 57534530 57534622 -224659042 - L2 LINE L2 -2 3311 3222 22 56 0 0 chr1 57534635 57534671 -224658993 + AT_rich Low_complexity Low_complexity 1 36 0 223 304 0 0 chr1 57534812 57534868 -224658796 - MIR3 SINE MIR -21 187 132 24 32 0 0 chr1 57535189 57535220 -224658444 + AT_rich Low_complexity Low_complexity 1 31 0 1107 180 0 43 chr1 57535432 57535643 -224658021 + AluJo SINE Alu 81 282 -30 2303 101 0 3 chr1 57535755 57536051 -224657613 - AluSc SINE Alu -14 295 1 717 160 0 0 chr1 57536085 57536191 -224657473 + FLAM_A SINE Alu 4 109 -33 656 140 28 0 chr1 57536216 57536323 -224657341 + HY1 scRNA scRNA 1 110 -2 26 64 0 0 chr1 57536449 57536496 -224657168 + AT_rich Low_complexity Low_complexity 1 47 0 420 175 52 10 chr1 57536632 57536729 -224656935 - L1ME3A LINE L1 -49 6121 6021 1618 223 67 16 chr1 57536748 57537304 -224656360 - L1ME3A LINE L1 -274 5896 5313 * 5597 137 41 6 chr1 57537292 57538974 -224654690 - L1MA4 LINE L1 -2 6298 4562 671 255 21 16 chr1 57539105 57539293 -224654371 + MIR SINE MIR 70 258 -4 2115 116 23 0 chr1 57539681 57539983 -224653681 + AluSx SINE Alu 1 309 -3 1651 174 9 47 chr1 57540357 57540535 -224653129 - AluJo SINE Alu -3 309 147 2065 100 43 0 chr1 57540535 57540814 -224652850 - AluSx SINE Alu -21 291 1 1651 174 9 47 chr1 57540814 57540952 -224652712 - AluJo SINE Alu -165 147 5 2450 80 3 0 chr1 57541802 57542113 -224651551 - AluSx SINE Alu 0 312 1 37 0 0 0 chr1 57542352 57542389 -224651275 + AT_rich Low_complexity Low_complexity 1 37 0 1954 146 0 3 chr1 57542396 57542684 -224650980 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr1 57542684 57542707 -224650957 + (CATA)n Simple_repeat Simple_repeat 2 24 0 354 265 106 45 chr1 57542851 57542983 -224650681 - L2 LINE L2 0 3313 3174 541 338 94 5 chr1 57542983 57543305 -224650359 - L2 LINE L2 -248 3065 2720 361 230 142 0 chr1 57543314 57543427 -224650237 - MIR SINE MIR -2 260 132 2030 141 3 0 chr1 57543435 57543725 -224649939 + AluSx SINE Alu 1 291 -21 2067 177 94 55 chr1 57543772 57544057 -224649607 - L1ME2 LINE L1 -3 6161 5889 1994 115 25 0 chr1 57544057 57544336 -224649328 + AluSx SINE Alu 1 286 -26 2067 177 94 55 chr1 57544336 57544666 -224648998 - L1ME2 LINE L1 -275 5889 5522 703 322 62 0 chr1 57544684 57544942 -224648722 - L2 LINE L2 -606 2708 2435 482 292 69 108 chr1 57545048 57545310 -224648354 + L2 LINE L2 2456 2727 -545 2238 117 3 0 chr1 57545310 57545608 -224648056 - AluSx SINE Alu -13 299 1 482 292 69 108 chr1 57545608 57546198 -224647466 + L2 LINE L2 2727 3272 0 2388 107 23 13 chr1 57546331 57546724 -224646940 - L1MC1 LINE L1 -146 6187 5791 2125 136 0 19 chr1 57546899 57547209 -224646455 - AluSx SINE Alu -3 309 6 22 35 0 0 chr1 57547628 57547657 -224646007 + AT_rich Low_complexity Low_complexity 1 29 0 180 327 80 60 chr1 57548157 57548356 -224645308 - L2 LINE L2 -4 3309 3107 369 399 106 36 chr1 57548479 57548504 -224645160 - L2 LINE L2 -1 3271 3249 1718 182 7 27 chr1 57548504 57548801 -224644863 + AluJo SINE Alu 1 291 -21 369 399 106 36 chr1 57548801 57549189 -224644475 - L2 LINE L2 -23 3249 2829 972 218 71 22 chr1 57549267 57549492 -224644172 + MIR SINE MIR 5 240 -22 232 377 0 0 chr1 57549635 57549712 -224643952 - L2 LINE L2 0 3313 3237 488 309 18 48 chr1 57549791 57549956 -224643708 - L2 LINE L2 -2 3270 3111 2994 99 14 34 chr1 57549966 57550461 -224643203 - L1MA8 LINE L1 0 6291 5807 296 262 48 104 chr1 57550737 57551149 -224642515 - L1ME3A LINE L1 -9 6161 5773 667 283 10 5 chr1 57551214 57551419 -224642245 - L1ME3A LINE L1 -524 5642 5437 5194 159 36 19 chr1 57551437 57551926 -224641738 - L1MC1 LINE L1 -17 6316 5837 2376 116 63 34 chr1 57551926 57552341 -224641323 - MSTC LTR MaLR 0 428 2 5194 159 36 19 chr1 57552341 57552869 -224640795 - L1MC1 LINE L1 -496 5837 5281 204 179 0 0 chr1 57552923 57552962 -224640702 + (CA)n Simple_repeat Simple_repeat 2 40 0 320 167 0 0 chr1 57552996 57553050 -224640614 - L1MC1 LINE L1 -891 5255 5202 2224 102 7 0 chr1 57553072 57553376 -224640288 - AluSx SINE Alu -6 306 1 985 185 107 98 chr1 57553404 57553750 -224639914 - MER66A LTR ERV1 0 478 130 231 224 35 86 chr1 57553765 57553881 -224639783 - MER41B LTR ERV1 -385 250 141 1580 151 47 7 chr1 57553913 57554192 -224639472 - MER41B-int LTR ERV1 0 6676 6387 841 149 53 36 chr1 57554192 57554522 -224639142 - MER66-int LTR ERV1 -1752 4924 4531 964 164 88 156 chr1 57554591 57554871 -224638793 - LTR45B LTR ERV1 0 489 258 888 144 0 0 chr1 57554871 57555003 -224638661 + FLAM_C SINE Alu 2 133 0 964 164 88 156 chr1 57555003 57555235 -224638429 - LTR45B LTR ERV1 -231 258 12 1685 151 53 35 chr1 57555269 57555553 -224638111 - AluJo SINE Alu -23 289 1 1790 208 34 9 chr1 57555596 57556043 -224637621 - L1MD3 LINE L1 -1 7994 7537 2110 239 75 47 chr1 57556076 57556275 -224637389 - L1ME2 LINE L1 -1 6163 5971 2209 109 10 0 chr1 57556275 57556579 -224637085 - AluSq SINE Alu -5 308 2 2110 239 75 47 chr1 57556579 57556871 -224636793 - L1ME2 LINE L1 -193 5971 5689 2293 119 0 3 chr1 57556871 57557183 -224636481 - AluSx SINE Alu -1 311 1 2110 239 75 47 chr1 57557183 57557404 -224636260 - L1ME2 LINE L1 -475 5689 5476 1963 141 0 3 chr1 57557404 57557687 -224635977 + AluSx SINE Alu 1 282 -30 213 65 0 0 chr1 57557690 57557721 -224635943 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 2110 239 75 47 chr1 57557721 57557828 -224635836 - L1ME2 LINE L1 -689 5475 5315 447 200 0 0 chr1 57557847 57557975 -224635689 - AluSg/x SINE Alu 0 309 202 353 94 0 47 chr1 57558077 57558141 -224635523 + AluSp/q SINE Alu 239 299 -4 3261 124 13 52 chr1 57558306 57559008 -224634656 + L1MA4A LINE L1 5062 5750 -553 2185 90 7 23 chr1 57559008 57559309 -224634355 + AluSx SINE Alu 1 296 -16 3261 124 13 52 chr1 57559309 57559386 -224634278 + L1MA4A LINE L1 5750 5828 -475 2223 140 0 0 chr1 57559388 57559696 -224633968 + AluSx SINE Alu 1 308 -4 817 145 0 0 chr1 57559703 57559820 -224633844 + FLAM_A SINE Alu 1 117 -16 1839 170 14 0 chr1 57560925 57561219 -224632445 - AluJo SINE Alu -12 300 3 519 330 24 14 chr1 57561438 57561650 -224632014 + MIR SINE MIR 38 251 -11 760 161 0 70 chr1 57561659 57561802 -224631862 + AluSq/x SINE Alu 1 133 -180 2289 112 0 3 chr1 57561885 57562197 -224631467 + AluSq SINE Alu 1 311 -2 255 235 82 0 chr1 57562270 57562355 -224631309 - MER112 DNA MER1_type 0 260 169 507 186 23 0 chr1 57562724 57562810 -224630854 + MER5A DNA MER1_type 9 96 -93 2316 91 3 0 chr1 57562822 57563119 -224630545 + AluY SINE Alu 1 298 -13 916 143 0 0 chr1 57563196 57563329 -224630335 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr1 57563379 57563401 -224630263 + AT_rich Low_complexity Low_complexity 1 22 0 2048 136 17 0 chr1 57563410 57563704 -224629960 + AluSx SINE Alu 1 299 -13 2078 119 0 7 chr1 57563707 57563993 -224629671 + AluSx SINE Alu 1 284 -28 234 0 0 0 chr1 57563993 57564019 -224629645 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1266 140 0 0 chr1 57564024 57564202 -224629462 + AluSg/x SINE Alu 123 300 -12 1684 181 17 0 chr1 57564576 57564863 -224628801 + AluJo SINE Alu 1 292 -20 1645 128 0 13 chr1 57564887 57565122 -224628542 + AluSx SINE Alu 64 295 -17 916 178 0 7 chr1 57565133 57565279 -224628385 + FRAM SINE Alu 1 137 -39 30 0 0 0 chr1 57565292 57565322 -224628342 + AT_rich Low_complexity Low_complexity 1 30 0 299 368 9 0 chr1 57565322 57565428 -224628236 - MIR3 SINE MIR -13 195 89 460 195 12 0 chr1 57565487 57565569 -224628095 + MER81 DNA DNA 1 83 -31 264 80 20 40 chr1 57565570 57565620 -224628044 + LTR49 LTR ERV1 459 507 -88 837 147 23 0 chr1 57565621 57565750 -224627914 + FLAM_C SINE Alu 2 133 0 600 172 112 0 chr1 57565809 57565925 -224627739 + FLAM_A SINE Alu 4 132 -1 276 215 151 21 chr1 57566220 57566313 -224627351 - MIR SINE MIR 0 262 158 * 290 207 86 60 chr1 57566301 57566417 -224627247 - L2 LINE L2 -524 2790 2672 401 279 27 0 chr1 57567429 57567540 -224626124 + L2 LINE L2 3200 3313 0 1529 182 43 13 chr1 57567710 57568012 -224625652 + AluJo SINE Alu 2 312 0 230 232 211 11 chr1 57568012 57568107 -224625557 - MLT1L LTR MaLR -152 463 350 3143 217 57 164 chr1 57568376 57569257 -224624407 + L2 LINE L2 769 1744 -1570 271 0 25 25 chr1 57569257 57569297 -224624367 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 848 219 18 73 chr1 57569302 57569521 -224624143 + MER20 DNA MER1_type 13 219 0 3143 217 57 164 chr1 57569521 57569936 -224623728 + L2 LINE L2 1748 2028 -1286 2624 128 19 7 chr1 57569936 57570366 -224623298 - L1MA4 LINE L1 0 6300 5866 3143 217 57 164 chr1 57570366 57570826 -224622838 + L2 LINE L2 2028 2536 -778 1945 89 33 94 chr1 57570833 57571010 -224622654 - Tigger1 DNA MER2_type -1 2417 2231 2245 113 3 0 chr1 57571010 57571311 -224622353 + AluSq SINE Alu 1 302 -11 1945 89 33 94 chr1 57571311 57571338 -224622326 - Tigger1 DNA MER2_type -187 2231 2204 1552 169 77 0 chr1 57571338 57571510 -224622154 - AluJb SINE Alu 0 305 103 2337 111 0 13 chr1 57571510 57571825 -224621839 - AluSx SINE Alu -1 311 1 1552 169 77 0 chr1 57571825 57571937 -224621727 - AluJb SINE Alu -202 103 1 1945 89 33 94 chr1 57571937 57572091 -224621573 - Tigger1 DNA MER2_type -214 2204 2079 1332 92 0 0 chr1 57572091 57572264 -224621400 - AluSp SINE Alu 0 313 141 5335 98 14 34 chr1 57572265 57572541 -224621123 - Tigger1 DNA MER2_type -325 2093 1813 1351 193 51 40 chr1 57572541 57572837 -224620827 + AluJb SINE Alu 1 299 -13 2234 132 0 0 chr1 57572839 57573149 -224620515 + AluSx SINE Alu 1 310 -2 5335 98 14 34 chr1 57573149 57573686 -224619978 - Tigger1 DNA MER2_type -606 1812 1294 205 138 0 0 chr1 57573688 57573717 -224619947 + (TTC)n Simple_repeat Simple_repeat 2 30 0 366 157 29 0 chr1 57573718 57573788 -224619876 - Tigger1 DNA MER2_type -1095 1323 1252 727 182 8 8 chr1 57573791 57573923 -224619741 + AluJ SINE Alu 2 133 -179 2260 100 10 23 chr1 57573934 57574243 -224619421 + AluSx SINE Alu 1 305 -7 986 195 18 0 chr1 57574670 57574839 -224618825 + AluJ SINE Alu 117 288 -24 2189 102 58 0 chr1 57574847 57575140 -224618524 + AluSx SINE Alu 1 310 -2 4000 105 32 55 chr1 57575158 57575471 -224618193 - Tigger1 DNA MER2_type -1166 1252 933 231 36 0 0 chr1 57575471 57575499 -224618165 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 4000 105 32 55 chr1 57575499 57575840 -224617824 - Tigger1 DNA MER2_type -1485 933 613 279 0 0 0 chr1 57575841 57575872 -224617792 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 518 174 23 0 chr1 57575899 57575985 -224617679 - FLAM_A SINE Alu -43 99 12 2402 90 0 3 chr1 57575999 57576298 -224617366 - AluSq SINE Alu -15 298 1 2776 103 25 40 chr1 57576298 57576446 -224617218 - Tigger1 DNA MER2_type -1802 616 467 1209 183 138 15 chr1 57576446 57576714 -224616950 + AluJo SINE Alu 1 301 -1 2191 113 0 25 chr1 57576717 57577003 -224616661 + AluSx SINE Alu 1 280 -32 240 35 0 0 chr1 57577003 57577032 -224616632 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2191 113 0 25 chr1 57577032 57577064 -224616600 + AluSx SINE Alu 280 311 -1 2776 103 25 40 chr1 57577064 57577356 -224616308 - Tigger1 DNA MER2_type -1953 465 179 2758 14 0 0 chr1 57577415 57577739 -224615925 + AluYa5 SINE Alu 1 324 0 720 171 0 0 chr1 57577746 57577857 -224615807 - FLAM_C SINE Alu -32 111 1 953 158 6 13 chr1 57577866 57578024 -224615640 - FRAM SINE Alu -22 154 1 1091 131 0 52 chr1 57578027 57578218 -224615446 - Tigger1 DNA MER2_type -2234 184 4 2328 111 0 0 chr1 57578218 57578525 -224615139 + AluSg SINE Alu 1 307 -3 1117 268 139 13 chr1 57578543 57578797 -224614867 + L2 LINE L2 2534 2755 -558 2254 123 0 0 chr1 57578797 57579098 -224614566 - AluSx SINE Alu -11 301 1 1117 268 139 13 chr1 57579098 57579519 -224614145 + L2 LINE L2 2755 3310 -3 195 195 218 23 chr1 57579541 57579628 -224614036 + L2 LINE L2 3169 3272 0 269 292 73 10 chr1 57579934 57580030 -224613634 + L2 LINE L2 3162 3263 -9 585 299 108 0 chr1 57580152 57580366 -224613298 + MIR SINE MIR 14 250 -12 1655 177 0 0 chr1 57580989 57581255 -224612409 + AluJo SINE Alu 42 307 -5 849 156 0 15 chr1 57581423 57581558 -224612106 - FLAM_C SINE Alu -10 133 1 24 32 0 0 chr1 57581560 57581591 -224612073 + AT_rich Low_complexity Low_complexity 1 31 0 2352 79 3 3 chr1 57581658 57581948 -224611716 + AluY SINE Alu 1 290 -21 2175 95 0 0 chr1 57581987 57582260 -224611404 + AluSg SINE Alu 1 273 -37 180 97 0 0 chr1 57582266 57582297 -224611367 + (CATA)n Simple_repeat Simple_repeat 4 34 0 2289 79 4 0 chr1 57582330 57582664 -224611000 + AluSp SINE Alu 5 339 0 1988 141 0 7 chr1 57582696 57582987 -224610677 + AluSq SINE Alu 1 289 -24 1705 176 114 11 chr1 57583041 57583400 -224610264 - MSTD LTR MaLR 0 396 1 2490 87 0 3 chr1 57583403 57583713 -224609951 + AluSx SINE Alu 1 309 -3 1841 136 22 56 chr1 57583958 57584281 -224609383 - AluSx SINE Alu 0 312 1 739 173 16 0 chr1 57584320 57584447 -224609217 + AluJo/FLAM SINE Alu 2 130 -172 2095 135 0 19 chr1 57584449 57584767 -224608897 + AluSx SINE Alu 1 312 0 1919 236 102 96 chr1 57584784 57585103 -224608561 + HAL1 LINE L1 1413 1728 -779 1883 163 0 7 chr1 57585103 57585409 -224608255 + AluJo SINE Alu 1 304 -8 1919 236 102 96 chr1 57585409 57585726 -224607938 + HAL1 LINE L1 1728 2041 -466 2075 123 17 0 chr1 57585726 57586018 -224607646 + AluSx SINE Alu 1 297 -15 1919 236 102 96 chr1 57586018 57586458 -224607206 + HAL1 LINE L1 2041 2497 -10 2351 104 0 7 chr1 57586470 57586779 -224606885 - AluSx SINE Alu -4 308 2 4827 140 56 79 chr1 57587329 57588276 -224605388 - MER21A LTR ERV1 -6 925 1 2232 116 55 71 chr1 57588436 57588482 -224605182 + LTR49-int LTR ERV1 3470 3515 -2234 2007 113 4 7 chr1 57588482 57588757 -224604907 + AluSx SINE Alu 30 303 -9 2232 116 55 71 chr1 57588757 57589012 -224604652 + LTR49-int LTR ERV1 3515 3773 -1976 2328 114 0 0 chr1 57589012 57589318 -224604346 + AluSx SINE Alu 1 306 -6 1966 131 0 27 chr1 57589321 57589619 -224604045 + AluSg SINE Alu 1 290 -20 2232 116 55 71 chr1 57589619 57589762 -224603902 + LTR49-int LTR ERV1 3775 4444 -1305 2488 88 0 3 chr1 57589762 57590069 -224603595 - AluSx SINE Alu -6 306 1 1017 117 25 0 chr1 57590069 57590232 -224603432 + LTR49-int LTR ERV1 4966 5132 -1199 606 167 67 17 chr1 57590233 57590353 -224603311 + FLAM_C SINE Alu 2 127 -16 1823 170 3 3 chr1 57590362 57590651 -224603013 + AluJo SINE Alu 5 293 -19 1977 132 4 0 chr1 57590656 57590967 -224602697 + AluSx SINE Alu 3 314 0 28 0 0 0 chr1 57590975 57591003 -224602661 + AT_rich Low_complexity Low_complexity 1 28 0 691 174 25 0 chr1 57591003 57591124 -224602540 + LTR49-int LTR ERV1 5118 5241 -1090 1770 124 66 0 chr1 57591124 57591398 -224602266 + AluSx SINE Alu 1 292 -20 1164 89 6 0 chr1 57591398 57591556 -224602108 + LTR49-int LTR ERV1 5402 5560 -771 240 222 61 91 chr1 57591556 57591655 -224602009 + LTR37A LTR ERV1 4 99 -327 730 231 193 52 chr1 57591656 57591986 -224601678 + LTR29-int LTR ERV1 4394 4725 -211 1084 156 204 31 chr1 57592067 57592558 -224601106 + LTR29 LTR ERV1 1 617 -5 317 310 60 60 chr1 57592773 57593041 -224600623 + L2 LINE L2 2566 2833 -481 303 28 0 0 chr1 57593042 57593078 -224600586 + (CA)n Simple_repeat Simple_repeat 2 37 0 2077 130 3 16 chr1 57593194 57593509 -224600155 - AluSx SINE Alu -1 311 1 1262 114 6 0 chr1 57593549 57593724 -224599940 + AluSg/x SINE Alu 122 297 -13 771 240 82 4 chr1 57593798 57594031 -224599633 + MIR SINE MIR 12 262 0 1575 207 24 0 chr1 57594262 57594557 -224599107 - AluJo SINE Alu -10 302 1 2100 110 10 10 chr1 57594560 57594859 -224598805 - AluSx SINE Alu -13 299 1 1738 65 0 14 chr1 57594862 57595076 -224598588 - AluY SINE Alu -4 307 97 67 0 0 0 chr1 57595076 57595143 -224598521 + AT_rich Low_complexity Low_complexity 1 67 0 1838 158 34 0 chr1 57595145 57595436 -224598228 - AluJb SINE Alu -11 301 1 217 307 59 10 chr1 57595540 57595641 -224598023 - MIR3 SINE MIR -16 192 87 1583 253 100 29 chr1 57595646 57596164 -224597500 - MLT1H1 LTR MaLR 0 555 1 411 242 45 123 chr1 57596164 57596474 -224597190 - MLT1H1-int LTR MaLR 0 1371 1086 1430 156 6 124 chr1 57596479 57596516 -224597148 + AluJb SINE Alu 1 41 -271 2332 102 0 3 chr1 57596516 57596819 -224596845 - AluSx SINE Alu -10 302 1 1430 156 6 124 chr1 57596819 57596944 -224596720 + AluJb SINE Alu 41 103 -209 2335 103 0 0 chr1 57596944 57597246 -224596418 + AluY SINE Alu 1 302 -9 1430 156 6 124 chr1 57597246 57597429 -224596235 + AluJb SINE Alu 103 306 -6 1933 146 3 16 chr1 57598080 57598389 -224595275 - AluSx SINE Alu -7 305 1 253 332 21 48 chr1 57598431 57598618 -224595046 - MLT1H1-int LTR MaLR -858 513 332 * 461 188 67 87 chr1 57598600 57598713 -224594951 - MLT1H1-int LTR MaLR -1225 146 35 4996 81 6 54 chr1 57598713 57598880 -224594784 + LTR8 LTR ERV1 1 175 -516 2182 106 0 3 chr1 57598880 57599187 -224594477 - AluSx SINE Alu 0 306 1 4996 81 6 54 chr1 57599187 57599744 -224593920 + LTR8 LTR ERV1 175 691 0 461 188 67 87 chr1 57599744 57599779 -224593885 - MLT1H1-int LTR MaLR -1336 35 1 1194 303 14 62 chr1 57599779 57600297 -224593367 - MLT1H1 LTR MaLR 0 555 63 938 143 0 0 chr1 57600490 57600623 -224593041 + AluJb SINE Alu 3 135 -177 1659 152 0 69 chr1 57601157 57601460 -224592204 - AluJo SINE Alu -30 282 1 954 165 51 0 chr1 57601460 57601618 -224592046 - FRAM SINE Alu -11 165 1 324 252 150 20 chr1 57601621 57601768 -224591896 - L2 LINE L2 -48 3265 3100 35 63 0 0 chr1 57601907 57601970 -224591694 + AT_rich Low_complexity Low_complexity 1 63 0 1932 97 94 0 chr1 57602321 57602588 -224591076 - AluSx SINE Alu -19 293 2 2125 141 0 0 chr1 57602590 57602888 -224590776 - AluSx SINE Alu -14 298 1 716 157 129 7 chr1 57602889 57603029 -224590635 - FRAM SINE Alu -10 166 10 330 307 150 13 chr1 57603040 57603193 -224590471 - MER5A DNA MER1_type -7 182 9 1895 125 30 0 chr1 57603330 57603594 -224590070 + AluJb SINE Alu 1 272 -40 670 118 20 20 chr1 57603627 57603779 -224589885 - Charlie1 DNA MER1_type -90 2671 2520 1107 85 0 0 chr1 57603856 57603986 -224589678 + AluSq/x SINE Alu 1 130 -182 1204 75 0 0 chr1 57604001 57604148 -224589516 + HERV17 LTR ERV1 2563 2709 -5917 6885 53 3 6 chr1 57604151 57604997 -224588667 + HERV17 LTR ERV1 1173 2016 -6610 * 10987 45 18 1 chr1 57604980 57606284 -224587380 + HERV17 LTR ERV1 2430 3754 -4872 5086 35 30 0 chr1 57606263 57606474 -224587190 + HERV17 LTR ERV1 5405 5608 -3018 * 195 42 0 0 chr1 57606474 57606498 -224587166 + (GGAAA)n Simple_repeat Simple_repeat 2 25 0 5086 35 30 0 chr1 57606498 57606883 -224586781 + HERV17 LTR ERV1 5608 6019 -2607 324 26 0 0 chr1 57606876 57606915 -224586749 + HERV17 LTR ERV1 7510 7548 -1078 * 2353 62 3 0 chr1 57606905 57607196 -224586468 + HERV17 LTR ERV1 8335 8626 0 2298 116 0 6 chr1 57607196 57607524 -224586140 + LTR17 LTR ERV1 1 326 -454 41 0 0 0 chr1 57607524 57607565 -224586099 + AT_rich Low_complexity Low_complexity 1 41 0 245 206 16 16 chr1 57607719 57607782 -224585882 + MIR SINE MIR 78 140 -122 1074 167 0 11 chr1 57607916 57608127 -224585537 + AluJo SINE Alu 109 312 0 636 173 0 0 chr1 57608279 57608383 -224585281 - U13 snRNA snRNA 0 104 1 2183 205 17 0 chr1 57608531 57608945 -224584719 + MER63 DNA MER1_type 637 1057 -4 241 234 47 0 chr1 57608960 57609024 -224584640 + MIR SINE MIR 129 195 -67 265 241 51 0 chr1 57609202 57609281 -224584383 + MIR SINE MIR 180 262 0 1870 146 7 4 chr1 57609320 57609630 -224584034 + AluSx SINE Alu 1 311 0 200 350 0 0 chr1 57609889 57609949 -224583715 + L2 LINE L2 3126 3185 -87 2324 107 0 0 chr1 57610006 57610304 -224583360 - AluSg SINE Alu -12 298 1 2288 105 0 10 chr1 57610433 57610739 -224582925 + AluSq SINE Alu 1 303 -10 1680 149 42 17 chr1 57610767 57611055 -224582609 + AluJo SINE Alu 1 295 -17 27 29 0 0 chr1 57611094 57611128 -224582536 + AT_rich Low_complexity Low_complexity 1 34 0 706 136 7 26 chr1 57611278 57611433 -224582231 + (TTTC)n Simple_repeat Simple_repeat 4 155 0 2039 120 0 30 chr1 57611439 57611740 -224581924 - AluSx SINE Alu -20 292 1 653 304 111 19 chr1 57612460 57612838 -224580826 - L2 LINE L2 -337 2977 2565 261 264 0 0 chr1 57613362 57613434 -224580230 + (CGG)n Simple_repeat Simple_repeat 3 74 0 29 0 0 0 chr1 57613473 57613502 -224580162 + GC_rich Low_complexity Low_complexity 1 29 0 351 65 0 0 chr1 57614451 57614497 -224579167 + (TA)n Simple_repeat Simple_repeat 1 46 0 260 288 95 78 chr1 57615124 57615471 -224578193 + L2 LINE L2 2902 3254 -18 2274 101 0 14 chr1 57615758 57616055 -224577609 - AluSx SINE Alu -18 294 2 442 114 14 14 chr1 57616119 57616189 -224577475 - FLAM SINE Alu -25 118 49 625 211 83 25 chr1 57616589 57616756 -224576908 - AluJo SINE Alu -23 289 124 884 285 102 25 chr1 57617009 57617661 -224576003 + L2 LINE L2 2598 3313 0 1735 168 41 0 chr1 57617852 57618143 -224575521 - AluSx SINE Alu -9 303 1 24 0 0 0 chr1 57618143 57618167 -224575497 + AT_rich Low_complexity Low_complexity 1 24 0 656 188 54 9 chr1 57618167 57618279 -224575385 - FLAM_A SINE Alu -16 117 1 942 229 0 0 chr1 57618296 57618466 -224575198 - FAM SINE Alu -5 170 1 292 192 26 77 chr1 57619151 57619229 -224574435 + MIR SINE MIR 4 77 -185 819 122 7 48 chr1 57619372 57619519 -224574145 + FLAM_C SINE Alu 2 142 -1 761 156 49 0 chr1 57619664 57619786 -224573878 - FLAM_C SINE Alu -5 128 1 2058 122 0 3 chr1 57620454 57620765 -224572899 - AluSx SINE Alu 0 310 1 289 367 70 33 chr1 57620822 57621037 -224572627 + L2 LINE L2 2807 3029 -243 2198 50 43 18 chr1 57621393 57621700 -224571964 - AluY SINE Alu 0 311 1 937 211 6 0 chr1 57622089 57622250 -224571414 - FRAM SINE Alu -4 162 1 1379 158 0 0 chr1 57622273 57622475 -224571189 - AluJo SINE Alu -106 206 5 2047 120 3 3 chr1 57622486 57622770 -224570894 - AluSg SINE Alu -20 290 7 2189 125 3 0 chr1 57623010 57623313 -224570351 + AluSp SINE Alu 1 304 -9 1619 151 30 8 chr1 57623320 57623585 -224570079 + AluJo SINE Alu 1 271 -41 836 147 0 16 chr1 57623601 57623730 -224569934 + AluJo SINE Alu 1 127 -185 461 175 105 9 chr1 57623741 57623855 -224569809 + L1MB3 LINE L1 6001 6125 -58 1031 143 46 23 chr1 57623856 57624031 -224569633 + AluJo SINE Alu 129 307 -5 1115 179 0 0 chr1 57624237 57624405 -224569259 - FAM SINE Alu -6 169 2 775 176 0 37 chr1 57624481 57624617 -224569047 - FLAM_C SINE Alu -2 131 1 499 104 0 0 chr1 57625116 57625193 -224568471 - AluSp/q SINE Alu -1 312 236 2183 85 19 10 chr1 57625221 57625528 -224568136 - AluSx SINE Alu -2 310 1 922 210 173 15 chr1 57625863 57626134 -224567530 - MER2 DNA MER2_type -6 339 26 225 94 0 0 chr1 57626283 57626315 -224567349 + (ATTG)n Simple_repeat Simple_repeat 4 35 0 620 167 78 0 chr1 57626319 57626421 -224567243 - FLAM_C SINE Alu -32 111 2 362 239 8 60 chr1 57626474 57626608 -224567056 - L1ME3 LINE L1 -110 6052 5926 263 244 60 78 chr1 57626579 57626631 -224567033 - L1MA4A LINE L1 -396 5907 5856 * 595 263 136 25 chr1 57626631 57626874 -224566790 - L1ME3 LINE L1 -306 5864 5595 241 228 79 40 chr1 57626894 57626995 -224566669 - L1MC4 LINE L1 -10 8032 7928 470 246 51 8 chr1 57627050 57627168 -224566496 - L1ME3 LINE L1 -572 5592 5470 1067 191 61 8 chr1 57627174 57627420 -224566244 - L1MA9 LINE L1 0 6312 6054 490 217 0 9 chr1 57627473 57627579 -224566085 + Tigger2 DNA MER2_type 1 105 -2613 692 127 114 19 chr1 57628523 57628681 -224564983 + Tigger2 DNA MER2_type 91 263 -2455 825 164 14 14 chr1 57628683 57628823 -224564841 + AluJo SINE Alu 2 141 -171 2324 113 7 0 chr1 57628823 57629133 -224564531 + AluSx SINE Alu 1 312 0 1388 139 52 24 chr1 57629160 57629344 -224564320 + Tigger2 DNA MER2_type 2461 2655 -63 1592 192 3 51 chr1 57629344 57629656 -224564008 + AluSq SINE Alu 1 297 -16 1388 139 52 24 chr1 57629656 57629722 -224563942 + Tigger2 DNA MER2_type 2655 2718 0 503 187 16 88 chr1 57629722 57629832 -224563832 - L1ME3 LINE L1 -720 5444 5328 279 0 0 0 chr1 57629832 57629863 -224563801 + (TG)n Simple_repeat Simple_repeat 2 32 0 503 187 16 88 chr1 57629863 57629877 -224563787 - L1ME3 LINE L1 -836 5328 5315 2007 84 11 11 chr1 57629877 57630150 -224563514 - AluSg SINE Alu -36 274 2 503 187 16 88 chr1 57630150 57630206 -224563458 - L1ME3 LINE L1 -849 5315 5276 1674 182 14 7 chr1 57630269 57630566 -224563098 + AluJo SINE Alu 1 299 -13 914 164 0 0 chr1 57630879 57631007 -224562657 + FLAM_C SINE Alu 2 129 -4 1456 158 73 18 chr1 57631312 57631478 -224562186 - AluSx SINE Alu -11 301 113 2152 122 0 16 chr1 57631478 57631789 -224561875 - AluSx SINE Alu -6 306 1 1456 158 73 18 chr1 57631789 57631894 -224561770 - AluSx SINE Alu -199 113 15 1877 155 14 0 chr1 57632286 57632583 -224561081 - AluJo SINE Alu -11 301 1 1464 233 54 15 chr1 57632672 57633063 -224560601 - L1ME3 LINE L1 -1162 4984 4579 3970 157 40 22 chr1 57633095 57633688 -224559976 - L1MC1 LINE L1 -165 6168 5556 2147 98 7 7 chr1 57633688 57634000 -224559664 - AluSx SINE Alu 0 312 1 3970 157 40 22 chr1 57634000 57634146 -224559518 - L1MC1 LINE L1 -777 5556 5414 1423 172 112 16 chr1 57634146 57634449 -224559215 - L1MCa LINE L1 -5772 654 323 545 19 27 19 chr1 57634463 57634477 -224559187 - L1P4 LINE L1 -668 5497 5485 1838 166 7 10 chr1 57634477 57634784 -224558880 - AluSx SINE Alu -6 306 1 545 19 27 19 chr1 57634784 57634856 -224558808 - L1P4 LINE L1 -680 5485 5413 2253 123 3 0 chr1 57634870 57635180 -224558484 - AluSq SINE Alu -2 311 1 620 167 133 0 chr1 57635207 57635327 -224558337 - Tigger7 DNA MER2_type -569 136 1 1136 178 42 19 chr1 57636110 57636323 -224557341 + MER20 DNA MER1_type 1 218 -1 265 295 80 9 chr1 57636378 57636490 -224557174 + MIR SINE MIR 123 242 -20 185 196 239 0 chr1 57636460 57636506 -224557158 + L2 LINE L2 3216 3272 0 * 485 226 148 29 chr1 57637125 57637368 -224556296 - L1ME3 LINE L1 -1659 4487 4216 25 31 0 0 chr1 57637928 57637960 -224555704 + AT_rich Low_complexity Low_complexity 1 32 0 432 195 156 31 chr1 57638267 57638395 -224555269 + Charlie4 DNA MER1_type 1818 1961 0 855 87 0 0 chr1 57638587 57638691 -224554973 - AluSg/x SINE Alu -33 279 176 1301 85 0 0 chr1 57638714 57638878 -224554786 - AluY SINE Alu -12 299 136 1490 150 4 8 chr1 57638942 57639182 -224554482 - AluSx SINE Alu -73 239 1 284 75 0 0 chr1 57639184 57639224 -224554440 - AluJb SINE Alu -178 124 85 1222 198 89 56 chr1 57639263 57639569 -224554095 + L1MB8 LINE L1 4901 5223 -923 1450 151 4 79 chr1 57639569 57639858 -224553806 - AluSx SINE Alu 0 305 37 1222 198 89 56 chr1 57639858 57639908 -224553756 + L1MB8 LINE L1 5223 5270 -876 1353 144 136 144 chr1 57639913 57640441 -224553223 + L1MB8 LINE L1 5397 5920 -258 779 203 114 5 chr1 57640444 57640646 -224553018 + Tigger1 DNA MER2_type 1 224 -2194 1142 161 72 24 chr1 57640672 57640921 -224552743 + L1MB8 LINE L1 5900 6160 -18 1956 155 0 19 chr1 57640998 57641314 -224552350 + AluJb SINE Alu 1 310 -2 279 0 0 0 chr1 57641314 57641345 -224552319 + (TA)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr1 57641344 57641367 -224552297 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 199 318 16 0 chr1 57641470 57641533 -224552131 - MIR3 SINE MIR -11 197 134 2221 91 10 36 chr1 57642060 57642368 -224551296 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 57642462 57642483 -224551181 + AT_rich Low_complexity Low_complexity 1 21 0 1028 99 14 0 chr1 57642880 57643021 -224550643 - AluSg/x SINE Alu -12 300 158 324 252 157 34 chr1 57643045 57643192 -224550472 - MIR SINE MIR -88 174 10 1784 145 45 3 chr1 57643498 57643788 -224549876 - AluJb SINE Alu -9 303 2 354 279 29 19 chr1 57643873 57643977 -224549687 - L2 LINE L2 -2 3311 3207 1187 179 41 0 chr1 57643994 57644212 -224549452 + AluJo SINE Alu 3 229 -83 1880 178 107 8 chr1 57644359 57644725 -224548939 - MER68 LTR ERV1 -1 561 160 2157 125 0 0 chr1 57644762 57645057 -224548607 - AluSx SINE Alu -17 295 1 195 304 252 26 chr1 57646002 57646117 -224547547 - MIR SINE MIR -71 191 51 808 211 7 0 chr1 57646312 57646464 -224547200 + AluJb SINE Alu 137 289 -23 317 111 0 0 chr1 57646665 57646710 -224546954 - FLAM SINE Alu -8 125 81 1534 123 0 0 chr1 57647357 57647561 -224546103 + AluSx SINE Alu 1 204 -108 327 164 254 74 chr1 57651033 57651129 -224542535 + MER44D DNA MER2_type 1 78 -2413 2392 78 3 0 chr1 57651129 57651424 -224542240 - AluSp SINE Alu -17 296 1 327 164 254 74 chr1 57651424 57651449 -224542215 + MER44D DNA MER2_type 78 414 -195 4639 100 71 68 chr1 57651558 57651978 -224541686 - Tigger3b DNA MER2_type -2094 934 517 3066 127 183 49 chr1 57651978 57652280 -224541384 - LTR8A LTR ERV1 -3 724 464 1957 145 7 3 chr1 57652280 57652577 -224541087 + AluJo SINE Alu 1 298 -14 3066 127 183 49 chr1 57652577 57652912 -224540752 - LTR8A LTR ERV1 -263 464 1 4639 100 71 68 chr1 57652912 57653359 -224540305 - Tigger3b DNA MER2_type -2511 517 64 1429 155 7 72 chr1 57654149 57654501 -224539163 + AluJo SINE Alu 1 332 0 1499 197 3 21 chr1 57654501 57654785 -224538879 - AluJb SINE Alu -33 279 1 1231 157 101 146 chr1 57655309 57655567 -224538097 - LTR49 LTR ERV1 0 595 327 2088 136 42 33 chr1 57655567 57655927 -224537737 - THE1B LTR MaLR 0 364 2 1231 157 101 146 chr1 57655927 57656036 -224537628 - LTR49 LTR ERV1 -268 327 215 715 208 0 15 chr1 57656036 57656166 -224537498 + FLAM_A SINE Alu 1 128 -5 1231 157 101 146 chr1 57656166 57656420 -224537244 - LTR49 LTR ERV1 -380 215 1 804 226 83 68 chr1 57656679 57656929 -224536735 + MER46C DNA MER2_type 4 260 -78 267 103 0 0 chr1 57656929 57656968 -224536696 + (TG)n Simple_repeat Simple_repeat 2 40 0 804 226 83 68 chr1 57656968 57656983 -224536681 + MER46C DNA MER2_type 260 273 -65 1079 195 0 51 chr1 57657013 57657249 -224536415 - AluJo SINE Alu -4 308 85 706 207 21 14 chr1 57657249 57657394 -224536270 - AluJb SINE Alu -62 250 105 243 0 0 0 chr1 57657518 57657545 -224536119 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 265 180 20 0 chr1 57657553 57657603 -224536061 + MER46C DNA MER2_type 288 338 0 783 214 59 63 chr1 57657804 57657937 -224535727 + MIR SINE MIR 14 147 -115 1937 116 65 0 chr1 57657937 57658230 -224535434 + AluSq SINE Alu 2 313 0 783 214 59 63 chr1 57658230 57658334 -224535330 + MIR SINE MIR 147 250 -12 582 158 238 0 chr1 57659193 57659294 -224534370 + FLAM_C SINE Alu 3 127 -6 534 155 8 11 chr1 57659314 57659553 -224534111 + AluJb SINE Alu 1 301 -11 745 174 25 0 chr1 57659559 57659680 -224533984 + FLAM_C SINE Alu 4 127 -6 691 288 14 0 chr1 57659786 57660001 -224533663 - L1ME2 LINE L1 -9 6155 5938 2064 134 6 25 chr1 57660541 57660855 -224532809 - AluJo SINE Alu -4 308 1 1474 124 34 5 chr1 57661169 57661411 -224532253 - AluJb SINE Alu 0 317 70 291 226 168 44 chr1 57661770 57661907 -224531757 - MIR SINE MIR -6 256 103 589 129 0 0 chr1 57661918 57662003 -224531661 + AluSg/x SINE Alu 216 300 -12 337 252 87 106 chr1 57662177 57662395 -224531269 + L2 LINE L2 3100 3313 0 730 262 16 16 chr1 57662399 57662582 -224531082 + MIR3 SINE MIR 24 206 -2 199 330 275 0 chr1 57662915 57663024 -224530640 - L2 LINE L2 0 3272 3134 574 270 85 33 chr1 57663151 57663362 -224530302 + MIR SINE MIR 13 234 -28 335 128 0 0 chr1 57663439 57663486 -224530178 - MSTB LTR MaLR 0 428 382 1242 67 0 0 chr1 57663486 57663636 -224530028 + AluY SINE Alu 1 150 -161 745 91 55 0 chr1 57663637 57663747 -224529917 + AluSg/x SINE Alu 197 312 0 2444 146 10 20 chr1 57663747 57664150 -224529514 - MSTB LTR MaLR -27 399 1 233 245 61 0 chr1 57664156 57664205 -224529459 + MIR SINE MIR 32 83 -179 1877 159 7 13 chr1 57664234 57664543 -224529121 + AluJo SINE Alu 3 309 -3 3485 143 23 2 chr1 57664857 57665388 -224528276 - MER34 LTR ERV1 0 542 1 2188 101 0 31 chr1 57665548 57665865 -224527799 + AluSx SINE Alu 1 307 -5 2268 108 0 3 chr1 57666415 57666721 -224526943 - AluSg SINE Alu -5 305 1 2305 103 0 3 chr1 57667224 57667525 -224526139 - AluSc SINE Alu -9 300 1 2293 121 3 0 chr1 57667525 57667832 -224525832 - AluSp SINE Alu -5 308 1 2192 124 0 7 chr1 57667832 57668131 -224525533 - AluSx SINE Alu -15 297 1 247 238 95 36 chr1 57668177 57668261 -224525403 + U6 snRNA snRNA 1 89 -18 329 305 138 24 chr1 57668304 57668471 -224525193 - MIR SINE MIR -75 187 2 194 221 149 75 chr1 57668577 57668725 -224524939 + MIR SINE MIR 28 183 -79 1801 189 0 3 chr1 57669374 57669675 -224523989 - AluJo SINE Alu -12 300 1 186 250 23 0 chr1 57669719 57669763 -224523901 + MIR SINE MIR 198 242 -20 206 344 0 0 chr1 57669802 57669866 -224523798 - L2 LINE L2 -8 3305 3242 1786 72 9 0 chr1 57670007 57670229 -224523435 + AluSg/x SINE Alu 68 291 -19 287 198 58 12 chr1 57670307 57670393 -224523271 - MIR SINE MIR -69 193 104 427 361 21 11 chr1 57670419 57670610 -224523054 + MIR3 SINE MIR 4 196 -12 319 287 116 24 chr1 57670662 57670826 -224522838 + MIR SINE MIR 76 254 -8 523 289 52 20 chr1 57671006 57671207 -224522457 + MIR SINE MIR 18 219 -43 1811 133 59 25 chr1 57672039 57672325 -224521339 + AluSx SINE Alu 1 296 -16 960 128 0 0 chr1 57672325 57672458 -224521206 + AluSg/x SINE Alu 134 266 -46 186 43 0 0 chr1 57672494 57672517 -224521147 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 483 286 109 6 chr1 57672624 57672799 -224520865 + MIR SINE MIR 27 219 -43 832 206 98 33 chr1 57672803 57673127 -224520537 + LTR33 LTR ERVL 117 521 0 305 300 55 0 chr1 57673346 57673456 -224520208 - MIR SINE MIR -52 210 95 350 358 97 10 chr1 57673726 57673933 -224519731 - L2 LINE L2 -60 3212 2988 182 288 88 77 chr1 57674158 57674328 -224519336 - L2 LINE L2 -24 3248 3077 340 232 115 18 chr1 57674926 57675039 -224518625 - MIR SINE MIR -61 147 34 355 319 52 68 chr1 57675319 57675567 -224518097 + MIR SINE MIR 7 250 -12 288 240 31 77 chr1 57675636 57675825 -224517839 - L2 LINE L2 -293 2979 2800 1476 169 113 14 chr1 57676941 57677260 -224516404 - AluJo SINE Alu 0 347 1 2010 137 0 3 chr1 57677818 57678132 -224515532 - AluSx SINE Alu 0 312 1 2523 116 53 22 chr1 57678536 57678951 -224514713 - MSTA LTR MaLR 0 428 1 187 293 53 0 chr1 57679255 57679330 -224514334 + MIR SINE MIR 90 168 -94 200 338 68 0 chr1 57679340 57679414 -224514250 - MIR SINE MIR -7 255 177 1663 220 16 36 chr1 57679590 57679848 -224513816 + L1M4 LINE L1 4731 4978 -1168 1651 181 17 3 chr1 57679848 57680146 -224513518 + AluJo SINE Alu 1 302 -10 1663 220 16 36 chr1 57680146 57680328 -224513336 + L1M4 LINE L1 4978 5162 -984 1716 178 6 32 chr1 57680329 57680643 -224513021 + AluJb SINE Alu 1 306 -6 22 35 0 0 chr1 57680700 57680729 -224512935 + AT_rich Low_complexity Low_complexity 1 29 0 1647 184 16 20 chr1 57681325 57681630 -224512034 + AluSx SINE Alu 1 304 -8 25 31 0 0 chr1 57681820 57681852 -224511812 + AT_rich Low_complexity Low_complexity 1 32 0 2016 120 14 7 chr1 57682525 57682844 -224510820 - AluSx SINE Alu 0 321 1 2098 117 10 0 chr1 57682932 57683223 -224510441 + AluSx SINE Alu 1 294 -18 441 287 165 49 chr1 57683858 57684223 -224509441 + L2 LINE L2 1728 2049 -1265 2406 158 125 42 chr1 57684223 57684743 -224508921 + MLT1F1 LTR MaLR 1 563 -4 441 287 165 49 chr1 57684743 57685074 -224508590 + L2 LINE L2 2049 2505 -809 301 214 57 0 chr1 57685139 57685209 -224508455 + L1MC4a LINE L1 7274 7347 -461 1260 219 117 42 chr1 57685214 57685623 -224508041 + L1MC5 LINE L1 7274 7744 -217 1812 108 42 56 chr1 57685623 57685929 -224507735 - AluSx SINE Alu -10 302 1 1260 219 117 42 chr1 57685929 57686116 -224507548 + L1MC5 LINE L1 7744 7915 -46 872 151 14 0 chr1 57686121 57686260 -224507404 + AluJb SINE Alu 1 141 -171 40 67 0 0 chr1 57686267 57686342 -224507322 + AT_rich Low_complexity Low_complexity 1 75 0 234 348 7 36 chr1 57686343 57686481 -224507183 + L2 LINE L2 2731 2864 -450 554 337 73 10 chr1 57686536 57686824 -224506840 + L2 LINE L2 2946 3251 -21 305 259 27 82 chr1 57688275 57688422 -224505242 + MIR SINE MIR 58 196 -66 244 279 108 0 chr1 57688435 57688546 -224505118 + L2 LINE L2 3191 3313 0 2362 78 0 3 chr1 57688806 57689099 -224504565 + AluSx SINE Alu 1 292 -20 252 0 0 0 chr1 57689100 57689128 -224504536 + (CA)n Simple_repeat Simple_repeat 1 28 0 183 259 24 82 chr1 57689795 57689880 -224503784 - L2 LINE L2 -3 3269 3190 1518 160 64 29 chr1 57689897 57690178 -224503486 - AluJo SINE Alu -15 297 7 1035 119 6 19 chr1 57690360 57690520 -224503144 - MLT1A1 LTR MaLR -203 162 5 982 310 28 52 chr1 57691472 57692056 -224501608 + LTR68 LTR ERV1 6 724 -16 1278 173 178 26 chr1 57692056 57692398 -224501266 - MSTD LTR MaLR 0 396 3 982 310 28 52 chr1 57692398 57692415 -224501249 + LTR68 LTR ERV1 724 740 0 289 284 73 102 chr1 57692516 57692921 -224500743 - L2 LINE L2 -265 3007 2625 2056 149 3 0 chr1 57692921 57693229 -224500435 + AluJb SINE Alu 1 309 -3 289 284 73 102 chr1 57693229 57693293 -224500371 - L2 LINE L2 -647 2625 2561 221 169 12 121 chr1 57693409 57693446 -224500218 - L2 LINE L2 -939 2375 2349 2251 92 0 3 chr1 57693446 57693750 -224499914 - AluSx SINE Alu 0 303 1 221 169 12 121 chr1 57693750 57693794 -224499870 - L2 LINE L2 -965 2349 2302 310 319 51 7 chr1 57693870 57694008 -224499656 + L2 LINE L2 2942 3085 -228 570 233 79 12 chr1 57694031 57694254 -224499410 + MSTD LTR MaLR 1 294 -102 210 305 11 53 chr1 57694610 57694705 -224498959 - MIR SINE MIR -124 138 48 1949 118 42 14 chr1 57694708 57694997 -224498667 - AluSx SINE Alu -15 297 1 573 279 18 66 chr1 57695461 57695687 -224497977 - MIR SINE MIR -25 237 23 382 194 213 9 chr1 57696355 57696463 -224497201 - MER5A DNA MER1_type -1 188 59 339 65 0 0 chr1 57696495 57696541 -224497123 + (TG)n Simple_repeat Simple_repeat 2 47 0 2624 191 33 90 chr1 57697123 57697668 -224495996 - LTR8 LTR ERV1 0 691 197 2436 60 0 0 chr1 57697668 57697949 -224495715 - AluY SINE Alu -14 297 17 2624 191 33 90 chr1 57697949 57698136 -224495528 - LTR8 LTR ERV1 -494 197 1 211 243 25 15 chr1 57698203 57698300 -224495364 - MIR SINE MIR -65 143 63 2229 94 5 76 chr1 57698847 57699105 -224494559 - L1MA3 LINE L1 0 6305 6030 369 109 0 0 chr1 57699105 57699160 -224494504 + (TA)n Simple_repeat Simple_repeat 2 56 0 1859 101 62 4 chr1 57699161 57699419 -224494245 - AluSg SINE Alu -13 297 25 2229 94 5 76 chr1 57699419 57699541 -224494123 - L1MA3 LINE L1 -274 6031 5950 454 270 85 21 chr1 57699729 57699918 -224493746 - MIR SINE MIR -1 261 61 24 32 0 0 chr1 57700025 57700056 -224493608 + AT_rich Low_complexity Low_complexity 1 31 0 2272 109 3 13 chr1 57700093 57700405 -224493259 + AluSx SINE Alu 1 309 -3 2143 79 8 0 chr1 57700487 57700753 -224492911 - AluSp SINE Alu -45 268 1 266 301 98 15 chr1 57701373 57701506 -224492158 - MIR SINE MIR -39 223 80 278 243 54 0 chr1 57701674 57701748 -224491916 - L1M4 LINE L1 -3568 2578 2501 204 227 0 0 chr1 57701766 57701810 -224491854 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1072 145 21 98 chr1 57701811 57701984 -224491680 - AluJo SINE Alu -30 282 130 2248 78 10 3 chr1 57701984 57702277 -224491387 + AluSp SINE Alu 1 295 -18 1072 145 21 98 chr1 57702277 57702337 -224491327 - AluJo SINE Alu -182 130 67 1631 166 0 40 chr1 57702410 57702712 -224490952 - AluJb SINE Alu 0 312 23 2043 135 0 0 chr1 57703040 57703329 -224490335 + AluSg SINE Alu 1 289 -21 630 275 84 0 chr1 57703441 57703619 -224490045 + MIR SINE MIR 10 202 -60 452 243 66 15 chr1 57703639 57703775 -224489889 - L2 LINE L2 0 3313 3171 227 315 63 42 chr1 57703786 57703929 -224489735 + MIR SINE MIR 112 257 -5 297 0 0 0 chr1 57703962 57703995 -224489669 + (CA)n Simple_repeat Simple_repeat 2 34 0 1776 175 0 21 chr1 57704070 57704401 -224489263 + AluJb SINE Alu 1 325 0 432 303 108 10 chr1 57704833 57705028 -224488636 + MIR SINE MIR 49 262 0 2161 112 0 3 chr1 57705149 57705462 -224488202 + AluSx SINE Alu 1 312 0 614 241 56 6 chr1 57705778 57705940 -224487724 - MIR SINE MIR -70 192 23 1966 142 0 3 chr1 57706111 57706413 -224487251 - AluSx SINE Alu 0 301 1 255 176 0 0 chr1 57706525 57706576 -224487088 + L2 LINE L2 3262 3312 -1 1695 171 28 3 chr1 57707274 57707561 -224486103 + AluJb SINE Alu 2 295 -17 920 157 0 0 chr1 57707564 57707704 -224485960 + FLAM_C SINE Alu 1 140 -3 25 65 0 0 chr1 57707860 57707906 -224485758 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr1 57707954 57707994 -224485670 + AT_rich Low_complexity Low_complexity 1 40 0 33 0 0 0 chr1 57708076 57708109 -224485555 + AT_rich Low_complexity Low_complexity 1 33 0 1909 122 7 28 chr1 57708109 57708396 -224485268 - AluJb SINE Alu -27 285 5 656 309 96 29 chr1 57708583 57709062 -224484602 - L1ME2 LINE L1 -281 5883 5373 2535 67 0 0 chr1 57709247 57709547 -224484117 - AluY SINE Alu -11 300 1 2038 131 3 3 chr1 57709733 57710023 -224483641 + AluJb SINE Alu 1 290 -22 1369 191 28 12 chr1 57710302 57710553 -224483111 - AluJo SINE Alu -57 255 1 491 135 0 83 chr1 57710586 57710682 -224482982 - AluJb SINE Alu -139 173 86 396 309 143 21 chr1 57710683 57710906 -224482758 - L1M4 LINE L1 -3658 2488 2209 2408 101 0 0 chr1 57710906 57711212 -224482452 + AluSx SINE Alu 1 306 -6 396 309 143 21 chr1 57711212 57711324 -224482340 - L1M4 LINE L1 -3937 2209 2112 619 194 0 104 chr1 57711684 57711828 -224481836 - FLAM_A SINE Alu -6 136 8 359 265 31 0 chr1 57711860 57711958 -224481706 + MIR SINE MIR 106 206 -56 300 260 38 105 chr1 57712239 57712355 -224481309 + MIR SINE MIR 1 106 -156 2259 101 0 0 chr1 57712355 57712652 -224481012 + AluY SINE Alu 1 297 -14 300 260 38 105 chr1 57712652 57712753 -224480911 + MIR SINE MIR 106 212 -50 251 280 114 30 chr1 57713126 57713206 -224480458 - MIR SINE MIR -76 186 96 679 272 38 10 chr1 57713206 57713453 -224480211 + MIR SINE MIR 2 249 -13 291 308 28 0 chr1 57713674 57713781 -224479883 + MIR SINE MIR 34 143 -65 1916 163 0 3 chr1 57713862 57714162 -224479502 + AluJb SINE Alu 2 300 -12 309 316 43 8 chr1 57714756 57714873 -224478791 - L2 LINE L2 -11 3302 3182 189 107 0 0 chr1 57714876 57714904 -224478760 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 1227 120 0 0 chr1 57714910 57715068 -224478596 - AluSg/x SINE Alu -21 289 132 2356 102 3 0 chr1 57715068 57715372 -224478292 - AluSx SINE Alu -7 305 1 2311 89 3 0 chr1 57715383 57715675 -224477989 - AluSc SINE Alu -16 293 1 35 0 0 0 chr1 57715815 57715850 -224477814 + AT_rich Low_complexity Low_complexity 1 35 0 187 379 35 0 chr1 57715858 57715945 -224477719 - L2 LINE L2 -261 3052 2963 356 310 38 71 chr1 57716009 57716242 -224477422 - L2 LINE L2 -376 2938 2714 711 243 86 67 chr1 57716242 57716497 -224477167 + MIR SINE MIR 3 262 0 1588 276 109 21 chr1 57716504 57717319 -224476345 - L2 LINE L2 -609 2705 1819 479 198 40 20 chr1 57717320 57717421 -224476243 + U6 snRNA snRNA 1 103 -4 5253 220 76 37 chr1 57717422 57717730 -224475934 + L1MC4 LINE L1 6111 6406 -1636 214 39 0 0 chr1 57717730 57717756 -224475908 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 2198 109 0 3 chr1 57717756 57718041 -224475623 - AluSx SINE Alu -28 284 1 5253 220 76 37 chr1 57718041 57718209 -224475455 + L1MC4 LINE L1 6406 6566 -1476 1583 154 71 11 chr1 57718209 57718475 -224475189 + AluJo SINE Alu 1 282 -30 5253 220 76 37 chr1 57718475 57719431 -224474233 + L1MC4 LINE L1 6566 7648 -394 1550 189 0 43 chr1 57719431 57719753 -224473911 + AluJo SINE Alu 1 308 -4 5253 220 76 37 chr1 57719753 57720164 -224473500 + L1MC4 LINE L1 7648 8042 0 1785 146 3 52 chr1 57720187 57720496 -224473168 + AluSx SINE Alu 5 298 -14 321 308 147 0 chr1 57720506 57720662 -224473002 - L2 LINE L2 -1479 1835 1657 297 323 11 0 chr1 57720671 57720764 -224472900 + MIR3 SINE MIR 115 208 0 348 279 62 8 chr1 57721127 57721256 -224472408 - MIR3 SINE MIR -7 201 66 1861 143 7 10 chr1 57721833 57722127 -224471537 - AluSg SINE Alu -17 293 1 333 100 0 0 chr1 57722189 57722239 -224471425 + (A)n Simple_repeat Simple_repeat 1 50 0 225 313 76 33 chr1 57722411 57722535 -224471129 + L2 LINE L2 3008 3146 -167 2170 130 0 13 chr1 57722535 57722850 -224470814 - AluSx SINE Alu 0 312 2 225 313 76 33 chr1 57722850 57722936 -224470728 + L2 LINE L2 3146 3227 -86 4862 252 143 17 chr1 57723064 57724743 -224468921 + L2 LINE L2 811 2701 -613 2140 111 3 13 chr1 57724752 57725059 -224468605 - AluSx SINE Alu -8 304 1 1740 114 95 7 chr1 57725062 57725335 -224468329 - AluSx SINE Alu -15 297 1 669 101 0 0 chr1 57725345 57725434 -224468230 - AluJo SINE Alu -21 291 203 853 124 41 28 chr1 57725434 57725579 -224468085 - AluJo SINE Alu -163 149 3 3494 174 17 81 chr1 57725580 57725850 -224467814 - L1M4 LINE L1 -837 5309 5023 2469 74 3 3 chr1 57725850 57726161 -224467503 - AluY SINE Alu 0 311 1 3494 174 17 81 chr1 57726161 57726528 -224467136 - L1M4 LINE L1 -1123 5023 4634 2178 68 7 25 chr1 57726528 57726808 -224466856 + AluY SINE Alu 21 295 -16 3494 174 17 81 chr1 57726808 57727160 -224466504 - L1M4 LINE L1 -1512 4634 4383 1594 189 7 7 chr1 57727160 57727461 -224466203 - AluSx SINE Alu -11 301 1 3494 174 17 81 chr1 57727461 57727488 -224466176 - L1M4 LINE L1 -1763 4383 4356 1111 138 0 17 chr1 57727489 57727663 -224466001 - AluSg/x SINE Alu -12 300 130 1006 179 54 8 chr1 57727663 57727903 -224465761 - L1M4 LINE L1 -1789 4357 4107 1904 129 0 43 chr1 57727917 57728220 -224465444 - AluSx SINE Alu -22 290 1 203 348 54 18 chr1 57728220 57728332 -224465332 + L2 LINE L2 2689 2804 -510 1814 178 3 0 chr1 57728359 57728646 -224465018 + AluJo SINE Alu 3 290 -22 297 125 0 0 chr1 57728674 57728730 -224464934 + (CAT)n Simple_repeat Simple_repeat 2 57 0 520 298 133 18 chr1 57728741 57728959 -224464705 - MIR SINE MIR -12 250 8 2344 90 0 13 chr1 57729007 57729317 -224464347 + AluSc SINE Alu 1 306 -3 190 344 72 8 chr1 57729479 57729604 -224464060 - MIR SINE MIR -6 256 124 346 254 0 0 chr1 57729802 57729873 -224463791 - L2 LINE L2 -555 2759 2689 1838 187 0 0 chr1 57729874 57730173 -224463491 + AluJb SINE Alu 1 299 -13 599 107 12 0 chr1 57730179 57730263 -224463401 + FRAM SINE Alu 43 127 -49 631 285 78 31 chr1 57730276 57730532 -224463132 - L2 LINE L2 -613 2701 2434 564 284 86 18 chr1 57730684 57730906 -224462758 - MIR SINE MIR -6 256 20 309 340 35 21 chr1 57731557 57731701 -224461963 - MIR SINE MIR -71 191 46 212 284 23 23 chr1 57732548 57732636 -224461028 + MIR SINE MIR 121 208 -54 868 138 0 0 chr1 57732646 57732776 -224460888 + FLAM_C SINE Alu 3 132 -1 27 49 0 0 chr1 57732916 57732957 -224460707 + AT_rich Low_complexity Low_complexity 1 41 0 801 169 0 0 chr1 57732957 57733075 -224460589 - FLAM_C SINE Alu -25 118 1 316 290 80 51 chr1 57733181 57733357 -224460307 - MIR SINE MIR -4 258 78 243 0 0 0 chr1 57733525 57733552 -224460112 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr1 57733833 57733862 -224459802 + AT_rich Low_complexity Low_complexity 1 29 0 2302 105 3 0 chr1 57733993 57734298 -224459366 + AluSx SINE Alu 1 306 -6 513 195 106 0 chr1 57734344 57734457 -224459207 - FLAM_A SINE Alu -7 126 2 284 250 15 15 chr1 57734509 57734577 -224459087 - MIR SINE MIR -57 151 84 315 261 28 26 chr1 57734777 57734915 -224458749 - MIR SINE MIR -47 215 2 * 450 273 70 0 chr1 57734915 57735042 -224458622 + MIR SINE MIR 65 200 -62 361 318 127 38 chr1 57735475 57735711 -224457953 - L2 LINE L2 -17 3255 2999 430 340 47 61 chr1 57735807 57736086 -224457578 - L2 LINE L2 -43 3229 2955 292 268 127 0 chr1 57736232 57736338 -224457326 + MIR SINE MIR 37 142 -66 38 61 0 0 chr1 57736611 57736677 -224456987 + GC_rich Low_complexity Low_complexity 1 66 0 445 292 89 80 chr1 57736710 57737413 -224456251 + L1M2 LINE L1 634 1225 -5624 29 0 0 0 chr1 57738963 57738992 -224454672 + AT_rich Low_complexity Low_complexity 1 29 0 267 241 0 0 chr1 57739304 57739358 -224454306 - L2 LINE L2 -5 3308 3255 240 310 103 26 chr1 57739531 57739647 -224454017 + MIR SINE MIR 21 145 -63 345 243 7 129 chr1 57739647 57739787 -224453877 - L2 LINE L2 -8 3305 3183 266 177 97 16 chr1 57739771 57739833 -224453831 + L3 LINE CR1 1502 1568 -9 * 192 289 0 19 chr1 57740195 57740247 -224453417 - MIR SINE MIR -180 82 32 1246 164 5 27 chr1 57740554 57740774 -224452890 - AluJb SINE Alu -5 307 93 486 112 276 26 chr1 57741569 57741685 -224451979 + L1PA13 LINE L1 6018 6162 -1 264 237 134 21 chr1 57742317 57742414 -224451250 - MIR SINE MIR -92 170 63 594 275 81 7 chr1 57742632 57742916 -224450748 - L1MC4a LINE L1 -1927 5881 5577 1280 145 113 50 chr1 57742925 57743207 -224450457 + AluJo SINE Alu 6 305 -7 288 271 110 43 chr1 57743249 57743504 -224450160 - L1MC4a LINE L1 -590 5531 5260 325 244 85 0 chr1 57743698 57743780 -224449884 + MIR SINE MIR 61 149 -113 1004 202 79 0 chr1 57744313 57744516 -224449148 - MER20 DNA MER1_type 0 219 1 2000 112 9 37 chr1 57744517 57744838 -224448826 - AluSx SINE Alu 0 312 1 2263 92 0 7 chr1 57744864 57745168 -224448496 - AluSx SINE Alu -10 302 1 245 238 70 33 chr1 57745647 57745732 -224447932 - MIR SINE MIR -107 101 16 180 77 0 0 chr1 57745834 57745860 -224447804 + (TG)n Simple_repeat Simple_repeat 2 27 0 532 237 71 85 chr1 57745884 57746108 -224447556 - MIR SINE MIR -1 261 41 275 352 62 67 chr1 57746852 57747045 -224446619 - L2 LINE L2 -9 3263 3072 26 0 0 0 chr1 57747367 57747393 -224446271 + AT_rich Low_complexity Low_complexity 1 26 0 278 272 26 44 chr1 57747431 57747545 -224446119 + MIR SINE MIR 3 114 -148 933 123 35 0 chr1 57747665 57747836 -224445828 + CT-rich Low_complexity Low_complexity 2 178 0 2227 105 3 22 chr1 57747840 57748155 -224445509 - AluSc SINE Alu 0 309 1 211 256 0 0 chr1 57748313 57748356 -224445308 + (TA)n Simple_repeat Simple_repeat 1 43 0 2160 152 0 0 chr1 57748360 57748670 -224444994 - AluSg SINE Alu 0 310 1 2165 131 0 6 chr1 57749864 57750178 -224443486 + AluSx SINE Alu 1 312 0 503 136 45 0 chr1 57750178 57750266 -224443398 + AluSg/x SINE Alu 218 309 -1 4863 180 53 36 chr1 57750356 57750918 -224442746 - L1MB7 LINE L1 0 6184 5633 2113 129 3 0 chr1 57750918 57751212 -224442452 - AluSx SINE Alu -17 295 1 4863 180 53 36 chr1 57751212 57751628 -224442036 - L1MB7 LINE L1 -551 5633 5225 1878 125 24 27 chr1 57751628 57751924 -224441740 - AluJb SINE Alu -17 295 1 4863 180 53 36 chr1 57751924 57752391 -224441273 - L1MB7 LINE L1 -959 5225 4767 1979 131 29 20 chr1 57752391 57752697 -224440967 - AluSq SINE Alu -4 309 1 4863 180 53 36 chr1 57752697 57753025 -224440639 - L1MB7 LINE L1 -1417 4767 4446 2199 116 0 7 chr1 57753025 57753328 -224440336 - AluSx SINE Alu -11 301 1 4863 180 53 36 chr1 57753328 57753625 -224440039 - L1MB7 LINE L1 -1738 4446 4072 24 32 0 0 chr1 57753701 57753732 -224439932 + AT_rich Low_complexity Low_complexity 1 31 0 1594 195 24 7 chr1 57753775 57754067 -224439597 - AluJb SINE Alu -15 297 1 278 269 130 28 chr1 57754109 57754217 -224439447 + MER5A DNA MER1_type 2 120 -69 1759 131 7 4 chr1 57754272 57754546 -224439118 + AluSx SINE Alu 1 275 -37 387 0 0 0 chr1 57754725 57754768 -224438896 + (CA)n Simple_repeat Simple_repeat 1 43 0 1651 216 52 5 chr1 57754808 57755230 -224438434 - MER44D DNA MER2_type -108 497 1 1977 101 4 19 chr1 57755401 57755669 -224437995 + AluSx SINE Alu 1 264 -48 271 317 137 19 chr1 57755769 57755930 -224437734 + L2 LINE L2 2887 3066 -206 1787 182 3 3 chr1 57755982 57756279 -224437385 - AluJo SINE Alu -15 297 1 466 146 25 2 chr1 57757210 57757322 -224436342 - LTR37B LTR ERV1 0 468 312 2163 117 10 0 chr1 57757355 57757662 -224436002 + AluSq SINE Alu 1 310 -3 236 242 30 0 chr1 57757691 57757757 -224435907 - LTR37A LTR ERV1 -241 185 118 255 195 61 24 chr1 57757931 57758013 -224435651 - MER31-int LTR ERV1 -741 4195 4111 812 279 42 45 chr1 57758138 57758565 -224435099 - MER31-int LTR ERV1 -876 4060 3635 21020 56 2 4 chr1 57758583 57761445 -224432219 + L1P LINE L1 1029 3885 -2261 2151 50 0 0 chr1 57761445 57761742 -224431922 + L1PA8 LINE L1 3128 3424 -2722 7005 68 3 0 chr1 57761742 57763502 -224430162 + L1PA8 LINE L1 4430 6171 -1 23 33 0 0 chr1 57763547 57763577 -224430087 + AT_rich Low_complexity Low_complexity 1 30 0 186 267 0 70 chr1 57763734 57763820 -224429844 - L3 LINE CR1 -1169 408 329 231 386 83 23 chr1 57764166 57764552 -224429112 + L2 LINE L2 2844 3252 -20 1306 163 0 5 chr1 57764870 57765060 -224428604 - AluJb SINE Alu -19 293 105 366 183 14 0 chr1 57765212 57765283 -224428381 + AluS SINE Alu 226 297 -3 2053 94 17 23 chr1 57765340 57765639 -224428025 - AluSq SINE Alu -16 297 1 2236 104 7 3 chr1 57765755 57766062 -224427602 - AluSq SINE Alu -5 308 1 962 179 16 22 chr1 57766077 57766240 -224427424 + AluJb SINE Alu 129 292 -20 3594 166 50 20 chr1 57766240 57766977 -224426687 + L1MB4 LINE L1 5422 6180 0 962 179 16 22 chr1 57766977 57766997 -224426667 + AluJb SINE Alu 292 311 -1 2567 195 114 14 chr1 57766997 57767539 -224426125 + L1MB4 LINE L1 5331 5818 -365 1330 174 14 135 chr1 57767539 57767954 -224425710 - MLT1A1 LTR MaLR 0 365 1 2567 195 114 14 chr1 57767954 57768084 -224425580 + L1MB4 LINE L1 5818 5934 -249 2304 136 19 3 chr1 57768084 57768444 -224425220 - MER47A DNA MER2_type 0 366 1 2567 195 114 14 chr1 57768444 57768483 -224425181 + L1MB4 LINE L1 5934 6122 -61 2289 90 0 0 chr1 57768773 57769063 -224424601 - AluSc SINE Alu -14 295 6 187 155 138 35 chr1 57769357 57769415 -224424249 + MIR SINE MIR 84 147 -115 238 226 44 94 chr1 57769507 57769688 -224423976 + HsTC2 DNA Tc2 103 274 -1624 207 288 151 0 chr1 57769756 57769829 -224423835 - L2 LINE L2 -1 3312 3229 648 290 115 9 chr1 57770469 57770686 -224422978 + MIR SINE MIR 8 247 -15 210 37 0 0 chr1 57771400 57771427 -224422237 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 362 284 175 31 chr1 57771462 57771691 -224421973 - MLT1K LTR MaLR -8 580 319 657 304 108 65 chr1 57771784 57771818 -224421846 - L2 LINE L2 -2042 1272 1241 1265 168 307 3 chr1 57771818 57772176 -224421488 + MLT1C LTR MaLR 1 467 0 657 304 108 65 chr1 57772176 57772833 -224420831 - L2 LINE L2 -2073 1241 551 2171 65 25 11 chr1 57772850 57773126 -224420538 + AluSx SINE Alu 1 280 -32 2363 52 0 11 chr1 57773184 57773389 -224420275 - AluY SINE Alu 0 337 135 2462 64 0 3 chr1 57773389 57773685 -224419979 - AluY SINE Alu -16 295 1 2363 52 0 11 chr1 57773685 57773819 -224419845 - AluY SINE Alu -202 135 1 186 71 0 0 chr1 57774038 57774066 -224419598 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 261 342 75 17 chr1 57774493 57774613 -224419051 + L2 LINE L2 3187 3313 0 1881 125 62 14 chr1 57774616 57774905 -224418759 + AluJb SINE Alu 1 303 -9 1135 253 29 19 chr1 57775756 57776068 -224417596 - L1MD2 LINE L1 -40 6319 6005 2373 86 0 3 chr1 57776179 57776481 -224417183 - AluSg SINE Alu -9 301 1 841 264 41 27 chr1 57776747 57777042 -224416622 - MLT1I LTR MaLR -17 392 94 1557 134 17 0 chr1 57777207 57777438 -224416226 + AluSx SINE Alu 61 295 -17 267 103 0 0 chr1 57777438 57777477 -224416187 + (CATA)n Simple_repeat Simple_repeat 2 40 0 683 314 98 14 chr1 57777672 57778029 -224415635 - MLT1J LTR MaLR -87 424 38 570 225 163 0 chr1 57778029 57778158 -224415506 + FRAM SINE Alu 1 150 -26 251 291 82 27 chr1 57778163 57778273 -224415391 - MIR SINE MIR -127 135 20 260 286 86 23 chr1 57778636 57778811 -224414853 - L1ME4a LINE L1 -6 6115 5930 347 203 0 0 chr1 57779230 57779299 -224414365 + MER94 DNA DNA 4 72 -62 578 239 20 35 chr1 57779640 57779795 -224413869 + MER114 LTR ERV 5 158 -490 1862 107 80 50 chr1 57779795 57780094 -224413570 + AluSq SINE Alu 1 308 -5 578 239 20 35 chr1 57780094 57780139 -224413525 + MER114 LTR ERV 158 202 -446 238 224 0 0 chr1 57780169 57780218 -224413446 - Alu SINE Alu -171 131 83 415 171 0 0 chr1 57780238 57780314 -224413350 + MER114 LTR ERV 259 334 -314 2204 113 0 22 chr1 57780317 57780628 -224413036 - AluSq SINE Alu -9 304 1 1791 101 4 0 chr1 57780830 57781067 -224412597 + AluSq SINE Alu 54 291 -22 655 176 112 11 chr1 57781093 57781281 -224412383 + MER114 LTR ERV 421 627 -21 801 173 0 15 chr1 57781295 57781428 -224412236 - FLAM_A SINE Alu -2 131 1 44 0 0 0 chr1 57782423 57782467 -224411197 + AT_rich Low_complexity Low_complexity 1 44 0 806 156 0 31 chr1 57782467 57782595 -224411069 - FLAM_C SINE Alu -19 124 1 1670 194 0 14 chr1 57782754 57783047 -224410617 - AluJb SINE Alu -20 292 4 2010 131 3 3 chr1 57783059 57783349 -224410315 - AluSc SINE Alu -19 290 1 378 0 0 0 chr1 57783434 57783476 -224410188 + (CA)n Simple_repeat Simple_repeat 2 43 0 1651 216 52 5 chr1 57783516 57783938 -224409726 - MER44D DNA MER2_type -108 497 1 1977 101 4 19 chr1 57784109 57784377 -224409287 + AluSx SINE Alu 1 264 -48 271 317 137 19 chr1 57784477 57784638 -224409026 + L2 LINE L2 2887 3066 -206 1787 182 3 3 chr1 57784690 57784987 -224408677 - AluJo SINE Alu -15 297 1 466 146 25 2 chr1 57785918 57786030 -224407634 - LTR37B LTR ERV1 0 468 312 2163 117 10 0 chr1 57786063 57786370 -224407294 + AluSq SINE Alu 1 310 -3 236 242 30 0 chr1 57786399 57786465 -224407199 - LTR37A LTR ERV1 -241 185 118 255 195 61 24 chr1 57786639 57786721 -224406943 - MER31-int LTR ERV1 -741 4195 4111 759 279 45 45 chr1 57786846 57787272 -224406392 - MER31-int LTR ERV1 -876 4060 3635 21020 56 2 4 chr1 57787290 57790152 -224403512 + L1P LINE L1 1029 3885 -2261 2181 50 0 0 chr1 57790147 57790449 -224403215 + L1PA5 LINE L1 3123 3424 -2722 * 7230 51 3 0 chr1 57790449 57792184 -224401480 + L1PA5 LINE L1 4430 6146 -8 421 185 83 102 chr1 57792276 57792481 -224401183 - MER31-int LTR ERV1 -1407 3529 3329 198 0 0 0 chr1 57793272 57793294 -224400370 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 417 250 109 65 chr1 57794614 57794749 -224398915 + MIR3 SINE MIR 10 157 -51 1556 113 13 9 chr1 57794749 57794978 -224398686 + MER30 DNA MER1_type 1 230 0 417 250 109 65 chr1 57794978 57795026 -224398638 + MIR3 SINE MIR 157 201 -7 277 314 139 0 chr1 57795981 57796067 -224397597 - L2 LINE L2 -6 3266 3169 2245 123 0 7 chr1 57796203 57796511 -224397153 - AluSx SINE Alu -6 306 1 216 329 47 12 chr1 57796668 57796753 -224396911 - MIR SINE MIR -149 113 26 2075 131 6 6 chr1 57797716 57798028 -224395636 - AluSx SINE Alu 0 312 1 1627 193 3 7 chr1 57798614 57798904 -224394760 + AluJb SINE Alu 1 289 -23 2237 140 15 3 chr1 57798965 57799294 -224394370 - MER1B DNA MER1_type -4 333 1 1087 240 59 56 chr1 57799352 57799980 -224393684 - L1MC4a LINE L1 -799 5347 5216 676 230 0 15 chr1 57799990 57800125 -224393539 - FLAM_A SINE Alu 0 133 1 22 0 0 0 chr1 57800159 57800181 -224393483 + AT_rich Low_complexity Low_complexity 1 22 0 1398 133 5 9 chr1 57800223 57800441 -224393223 - AluSq SINE Alu -3 310 94 1381 115 0 0 chr1 57800554 57800736 -224392928 - AluSx SINE Alu -130 182 1 577 169 195 8 chr1 57800739 57800857 -224392807 - AluJb SINE Alu -172 140 1 622 199 116 0 chr1 57800857 57801003 -224392661 - L1MD2 LINE L1 -316 6043 5881 701 173 0 0 chr1 57801014 57801124 -224392540 - FRAM SINE Alu -63 113 4 1702 177 22 35 chr1 57801145 57801512 -224392152 - MLT1A1 LTR MaLR 0 365 4 1406 177 22 129 chr1 57801512 57801900 -224391764 - L1MD2 LINE L1 -489 5870 5537 801 159 0 15 chr1 57801900 57802032 -224391632 - FLAM_A SINE Alu 0 133 4 1406 177 22 129 chr1 57802032 57802100 -224391564 - L1MD2 LINE L1 -822 5537 5463 1119 222 56 19 chr1 57802112 57802432 -224391232 - L1MD2 LINE L1 -1162 4984 4653 387 203 7 65 chr1 57802407 57802453 -224391211 - L1MC4a LINE L1 -1116 5030 4983 * 2283 106 3 3 chr1 57802453 57802754 -224390910 - AluSp SINE Alu -12 301 1 387 203 7 65 chr1 57802754 57802845 -224390819 - L1MC4a LINE L1 -1163 4983 4901 769 194 0 0 chr1 57803043 57803172 -224390492 + FLAM_C SINE Alu 1 129 -4 19378 163 22 24 chr1 57803360 57805369 -224388295 + L1PA13 LINE L1 1320 3332 -3482 1915 125 66 0 chr1 57805369 57805641 -224388023 + AluSg SINE Alu 1 290 -20 19378 163 22 24 chr1 57805641 57806123 -224387541 + L1PA13 LINE L1 3332 3814 -3000 234 0 0 0 chr1 57806123 57806149 -224387515 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 19378 163 22 24 chr1 57806149 57806809 -224386855 + L1PA13 LINE L1 3814 4474 -2340 2343 85 10 0 chr1 57806809 57807104 -224386560 + AluSp SINE Alu 1 298 -15 19378 163 22 24 chr1 57807104 57807891 -224385773 + L1PA13 LINE L1 4474 5261 -1553 595 90 0 0 chr1 57807891 57807969 -224385695 - AluSg/x SINE Alu -16 294 217 19378 163 22 24 chr1 57807969 57808802 -224384862 + L1PA13 LINE L1 5261 6148 -666 2166 129 13 3 chr1 57808802 57809104 -224384560 + AluSx SINE Alu 1 305 -7 19378 163 22 24 chr1 57809104 57809764 -224383900 + L1PA13 LINE L1 6148 6808 -6 23 0 0 0 chr1 57809764 57809787 -224383877 + AT_rich Low_complexity Low_complexity 1 23 0 730 98 41 16 chr1 57809823 57809946 -224383718 - L1MB3 LINE L1 -2 6181 6056 2263 98 3 0 chr1 57809946 57810242 -224383422 - AluY SINE Alu -14 297 1 2090 137 0 3 chr1 57810247 57810540 -224383124 - AluSx SINE Alu -20 292 1 359 292 24 61 chr1 57810540 57810639 -224383025 - L1M4 LINE L1 -2354 3792 3691 1917 174 0 16 chr1 57810639 57810955 -224382709 - AluSq SINE Alu -2 311 1 359 292 24 61 chr1 57810955 57811166 -224382498 - L1M4 LINE L1 -2455 3691 3483 210 138 0 0 chr1 57811210 57811239 -224382425 - MER91 DNA MER1_type -122 68 40 934 230 82 16 chr1 57811321 57811578 -224382086 - MLT1I LTR MaLR -28 381 108 424 263 156 15 chr1 57811759 57811964 -224381700 - L1MDa LINE L1 -4505 2035 1802 1241 243 61 9 chr1 57812098 57812543 -224381121 - L1M4 LINE L1 -2555 3591 3124 447 160 276 58 chr1 57812748 57812759 -224380905 - L2 LINE L2 -1159 2155 2148 1585 196 13 23 chr1 57812759 57813060 -224380604 + AluJb SINE Alu 1 298 -14 447 160 276 58 chr1 57813060 57813204 -224380460 - L2 LINE L2 -1166 2148 1966 350 297 23 17 chr1 57813206 57813381 -224380283 - L1MC4 LINE L1 -124 7918 7743 549 114 0 0 chr1 57813388 57813467 -224380197 - AluSg/x SINE Alu -17 293 215 1135 101 0 38 chr1 57813467 57813626 -224380038 - AluSq SINE Alu -160 153 1 902 209 60 46 chr1 57813659 57813961 -224379703 - L1MC4 LINE L1 -259 7783 7478 1025 253 27 0 chr1 57814020 57814313 -224379351 - L1M4 LINE L1 -2564 3582 3282 1917 142 36 7 chr1 57814313 57814615 -224379049 - AluSx SINE Alu -1 311 1 1080 264 67 14 chr1 57814689 57815109 -224378555 - L1MC4 LINE L1 -707 7335 6894 24 32 0 0 chr1 57815198 57815229 -224378435 + AT_rich Low_complexity Low_complexity 1 31 0 1330 171 5 0 chr1 57815229 57815446 -224378218 - AluJb SINE Alu -26 286 69 571 255 149 19 chr1 57815690 57815851 -224377813 + MER5A DNA MER1_type 5 186 -3 1850 143 0 4 chr1 57816001 57816273 -224377391 + AluJb SINE Alu 21 291 -21 312 353 19 26 chr1 57816475 57816631 -224377033 - MER5A DNA MER1_type -18 171 17 1115 103 7 0 chr1 57816710 57816856 -224376808 + FRAM SINE Alu 1 146 -30 243 0 0 0 chr1 57816859 57816886 -224376778 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2236 115 7 0 chr1 57817728 57818024 -224375640 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 57818722 57818744 -224374920 + AT_rich Low_complexity Low_complexity 1 22 0 2266 104 3 0 chr1 57819685 57819974 -224373690 - AluSx SINE Alu -22 290 1 21 36 0 0 chr1 57819976 57820004 -224373660 + AT_rich Low_complexity Low_complexity 1 28 0 1916 155 0 10 chr1 57820195 57820491 -224373173 + AluJo SINE Alu 1 293 -19 2356 100 0 3 chr1 57821742 57822043 -224371621 - AluSx SINE Alu -12 300 1 1439 215 85 45 chr1 57822189 57822612 -224371052 - LTR40b LTR ERVL -2 460 21 526 239 39 32 chr1 57822821 57822976 -224370688 - MLT2E LTR ERVL -2 626 471 2177 122 0 10 chr1 57823227 57823539 -224370125 - AluSg1 SINE Alu 0 309 1 588 187 81 16 chr1 57823546 57823669 -224369995 - FLAM_A SINE Alu -2 131 1 1166 263 33 48 chr1 57823671 57824002 -224369662 - MLT2E LTR ERVL -297 331 6 2090 151 0 0 chr1 57824038 57824337 -224369327 - AluSx SINE Alu -13 299 1 2558 274 91 20 chr1 57824405 57824522 -224369142 + L1M4c LINE L1 396 503 -5880 1761 157 49 7 chr1 57824522 57824809 -224368855 - AluJo SINE Alu -13 299 1 2558 274 91 20 chr1 57824809 57826664 -224367000 + L1M4c LINE L1 503 2076 -4307 2063 121 19 32 chr1 57826664 57826979 -224366685 + AluSx SINE Alu 1 311 -1 2558 274 91 20 chr1 57826979 57827101 -224366563 + L1M4c LINE L1 2076 2188 -4195 830 157 8 0 chr1 57827138 57827259 -224366405 + FLAM_C SINE Alu 3 124 -19 1750 137 139 82 chr1 57827308 57827724 -224365940 - LTR47A LTR ERVL 0 452 13 2544 209 48 50 chr1 57827750 57828000 -224365664 + L1M4c LINE L1 2079 2328 -4054 1945 151 7 0 chr1 57828000 57828299 -224365365 + AluJb SINE Alu 3 303 -9 2544 209 48 50 chr1 57828299 57828969 -224364695 + L1M4c LINE L1 2328 2991 -3391 231 157 0 0 chr1 57828971 57829022 -224364642 + T-rich Low_complexity Low_complexity 1 51 0 1802 206 25 17 chr1 57830072 57830549 -224363115 + L1M4c LINE L1 2965 3445 -2937 6007 144 29 8 chr1 57830557 57831832 -224361832 - L1MA4 LINE L1 -8 6292 4998 262 150 0 0 chr1 57831832 57831872 -224361792 + Charlie3 DNA MER1_type 1 40 -2670 2047 172 24 42 chr1 57831872 57831978 -224361686 + L1MA9 LINE L1 4585 4691 -1621 1778 156 3 3 chr1 57831978 57832285 -224361379 - AluJb SINE Alu 0 307 1 2047 172 24 42 chr1 57832285 57832814 -224360850 + L1MA9 LINE L1 4691 5778 -534 * 7875 178 7 47 chr1 57832807 57833030 -224360634 + L1M4c LINE L1 3525 3755 -2627 2210 104 0 13 chr1 57833030 57833328 -224360336 + AluSg SINE Alu 1 294 -16 7875 178 7 47 chr1 57833328 57833805 -224359859 + L1M4c LINE L1 3755 4249 -2133 2272 82 7 7 chr1 57833805 57834097 -224359567 + AluSc SINE Alu 1 292 -17 7875 178 7 47 chr1 57834097 57834366 -224359298 + L1M4c LINE L1 4249 4527 -1855 1962 114 37 4 chr1 57834366 57834677 -224358987 + AluSx SINE Alu 1 320 0 7875 178 7 47 chr1 57834677 57834758 -224358906 + L1M4c LINE L1 4527 4610 -1772 1636 135 120 8 chr1 57834758 57835024 -224358640 + AluSx SINE Alu 1 296 -16 7875 178 7 47 chr1 57835024 57835380 -224358284 + L1M4c LINE L1 4610 4856 -1526 1877 162 26 3 chr1 57835380 57835683 -224357981 + AluSx SINE Alu 1 310 -2 7875 178 7 47 chr1 57835683 57836031 -224357633 + L1M4c LINE L1 4856 5216 -1166 2368 160 34 54 chr1 57836056 57836557 -224357107 + L1MA9 LINE L1 5784 6274 -38 2175 120 3 0 chr1 57836601 57836892 -224356772 - AluSx SINE Alu -20 292 1 335 261 104 8 chr1 57837064 57837198 -224356466 - ERVL LTR ERVL -269 5495 5349 11231 247 65 35 chr1 57837203 57838083 -224355581 - ERVL LTR ERVL -900 4864 4012 2233 95 3 3 chr1 57838083 57838451 -224355213 - AluSx SINE Alu 0 312 1 11231 247 65 35 chr1 57838451 57840652 -224353012 - ERVL LTR ERVL -1752 4012 1691 532 307 128 55 chr1 57840714 57841150 -224352514 - L1ME LINE L1 -5591 479 12 1267 104 0 0 chr1 57841234 57841398 -224352266 - AluSp SINE Alu -11 302 139 1925 124 8 129 chr1 57841727 57842123 -224351541 + MER7A DNA MER2_type 1 346 0 587 203 20 14 chr1 57842145 57842293 -224351371 - L1MEc LINE L1 -4406 1990 1842 1073 129 52 0 chr1 57842302 57842429 -224351235 + AluSx SINE Alu 1 139 -173 189 0 0 0 chr1 57842429 57842450 -224351214 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1073 129 52 0 chr1 57842450 57842477 -224351187 + AluSx SINE Alu 139 163 -149 2550 70 0 0 chr1 57842581 57842883 -224350781 - AluY SINE Alu -9 302 1 1321 169 117 7 chr1 57843348 57843426 -224350238 + L1P LINE L1 2766 2834 -3312 1917 139 49 0 chr1 57843426 57843713 -224349951 + AluSq SINE Alu 1 301 -12 1321 169 117 7 chr1 57843713 57843907 -224349757 + L1P LINE L1 2834 3068 -3078 2266 92 0 7 chr1 57844016 57844308 -224349356 - AluSc SINE Alu -19 290 1 483 18 0 0 chr1 57845503 57845559 -224348105 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 2158 243 52 93 chr1 57845619 57845781 -224347883 - L1MEc LINE L1 -5453 943 776 2001 145 3 0 chr1 57845781 57846077 -224347587 - AluSx SINE Alu -15 297 1 2158 243 52 93 chr1 57846077 57846247 -224347417 - L1MEc LINE L1 -5620 776 601 1888 131 0 0 chr1 57846247 57846515 -224347149 + AluSx SINE Alu 1 268 -44 2158 243 52 93 chr1 57846515 57847127 -224346537 - L1MEc LINE L1 -5795 601 37 359 316 86 17 chr1 57847493 57847610 -224346054 + L2 LINE L2 3116 3240 -32 873 304 55 48 chr1 57847677 57847913 -224345751 + L2 LINE L2 2520 2753 -560 1715 176 7 0 chr1 57847913 57848202 -224345462 + AluJo SINE Alu 3 293 -19 873 304 55 48 chr1 57848202 57848333 -224345331 + L2 LINE L2 2753 2882 -431 2352 94 3 3 chr1 57848333 57848640 -224345024 - AluSp SINE Alu -6 307 1 873 304 55 48 chr1 57848640 57848797 -224344867 + L2 LINE L2 2882 3048 -265 1367 231 26 26 chr1 57848826 57848880 -224344784 + L1MC4 LINE L1 6529 6582 -1314 207 0 0 0 chr1 57848880 57848903 -224344761 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1367 231 26 26 chr1 57848903 57849288 -224344376 + L1MC4 LINE L1 6582 7051 -845 1101 143 0 0 chr1 57849288 57849449 -224344215 + FRAM SINE Alu 1 160 -16 4214 103 217 22 chr1 57849470 57850161 -224343503 + LTR12 LTR ERV1 1 826 0 1855 159 14 37 chr1 57850164 57850517 -224343147 - L1MB8 LINE L1 -97 6081 5737 1751 163 3 23 chr1 57850879 57851180 -224342484 + AluJo SINE Alu 1 295 -17 2022 132 20 0 chr1 57851184 57851487 -224342177 + AluSx SINE Alu 1 309 -3 683 216 0 9 chr1 57851780 57851928 -224341736 - FLAM_A SINE Alu 0 147 1 1406 197 140 0 chr1 57851937 57852201 -224341463 - AluJo SINE Alu 0 302 2 274 312 50 44 chr1 57852203 57852361 -224341303 - L1M4 LINE L1 -2658 3488 3332 2285 88 0 23 chr1 57852361 57852667 -224340997 + AluSq SINE Alu 1 299 -14 274 312 50 44 chr1 57852667 57852825 -224340839 - L1M4 LINE L1 -2814 3332 3170 3546 123 13 52 chr1 57852832 57853534 -224340130 + L1MA4A LINE L1 5062 5750 -553 2193 90 7 23 chr1 57853534 57853835 -224339829 + AluSx SINE Alu 1 296 -16 3546 123 13 52 chr1 57853835 57853912 -224339752 + L1MA4A LINE L1 5750 5828 -475 2202 140 0 0 chr1 57853914 57854222 -224339442 + AluSx SINE Alu 1 308 -4 862 131 0 46 chr1 57854229 57854359 -224339305 + FLAM_A SINE Alu 1 124 -9 1807 171 14 0 chr1 57855451 57855744 -224337920 - AluJo SINE Alu -13 299 3 494 330 24 14 chr1 57855963 57856175 -224337489 + MIR SINE MIR 38 251 -11 817 162 0 70 chr1 57856185 57856327 -224337337 + AluSq/x SINE Alu 2 133 -180 2144 123 7 10 chr1 57856410 57856720 -224336944 + AluSx SINE Alu 1 309 -3 694 180 113 0 chr1 57856729 57856879 -224336785 + Tigger7 DNA MER2_type 2318 2484 -7 39 38 0 0 chr1 57857191 57857244 -224336420 + AT_rich Low_complexity Low_complexity 1 53 0 430 134 30 0 chr1 57857303 57857370 -224336294 - AluJ/FRAM SINE Alu -20 292 224 181 229 114 71 chr1 57857378 57857430 -224336234 + MIR3 SINE MIR 101 155 -53 270 243 168 75 chr1 57857430 57857539 -224336125 + MER5A DNA MER1_type 1 133 -56 1512 157 99 4 chr1 57857539 57857801 -224335863 - AluJb SINE Alu -25 287 1 270 243 168 75 chr1 57857801 57857864 -224335800 + MER5A DNA MER1_type 133 189 0 1593 172 3 20 chr1 57858207 57858504 -224335160 - AluJo SINE Alu -20 292 1 2469 56 16 3 chr1 57859357 57859660 -224334004 - AluSp SINE Alu -6 307 1 1990 147 3 0 chr1 57859924 57860216 -224333448 - AluSx SINE Alu -19 293 1 312 307 211 46 chr1 57860273 57860370 -224333294 + L2 LINE L2 2644 2724 -589 2376 80 0 0 chr1 57860370 57860657 -224333007 + AluSc SINE Alu 1 287 -22 312 307 211 46 chr1 57860657 57860873 -224332791 + L2 LINE L2 2724 3006 -307 1991 118 233 10 chr1 57860905 57861322 -224332342 - Tigger3(Golem) DNA MER2_type -48 2981 2472 1257 141 20 94 chr1 57861316 57861364 -224332300 - Tigger3(Golem) DNA MER2_type -995 236 186 * 1985 110 14 27 chr1 57861364 57861656 -224332008 + AluSq SINE Alu 1 288 -25 1257 141 20 94 chr1 57861656 57861769 -224331895 - Tigger3(Golem) DNA MER2_type -1045 186 98 2340 77 17 0 chr1 57861769 57862067 -224331597 - AluSp SINE Alu -9 304 2 1257 141 20 94 chr1 57862067 57862159 -224331505 - Tigger3(Golem) DNA MER2_type -1133 98 1 182 274 12 71 chr1 57862182 57862266 -224331398 + L2 LINE L2 3230 3308 -5 528 127 37 22 chr1 57862426 57862560 -224331104 + CT-rich Low_complexity Low_complexity 4 139 0 1424 158 23 39 chr1 57862564 57862823 -224330841 - AluJb SINE Alu -27 285 31 261 176 14 108 chr1 57863067 57863109 -224330555 - MER5A DNA MER1_type 0 189 155 2218 108 3 3 chr1 57863109 57863405 -224330259 - AluSx SINE Alu -16 296 1 261 176 14 108 chr1 57863405 57863436 -224330228 - MER5A DNA MER1_type -34 155 123 1640 122 41 0 chr1 57863463 57863708 -224329956 + AluSx SINE Alu 58 312 0 540 189 131 0 chr1 57863710 57863832 -224329832 - MER5A DNA MER1_type -50 139 2 221 241 71 27 chr1 57864167 57864279 -224329385 - MIR SINE MIR -56 206 90 2329 90 3 6 chr1 57864340 57864651 -224329013 + AluSp SINE Alu 1 310 -3 773 241 122 17 chr1 57865281 57865518 -224328146 + MIR SINE MIR 1 262 0 2127 103 14 0 chr1 57865638 57865929 -224327735 - AluY SINE Alu -16 295 1 353 264 240 0 chr1 57866990 57867111 -224326553 - MIR3 SINE MIR -26 182 33 2534 63 7 0 chr1 57867507 57867806 -224325858 + AluSc SINE Alu 1 301 -8 2219 98 31 0 chr1 57868241 57868527 -224325137 - AluSc SINE Alu -14 295 1 270 300 0 0 chr1 57868800 57868870 -224324794 - Charlie8 DNA MER1_type -1 2416 2347 * 702 227 43 26 chr1 57868848 57869055 -224324609 - Charlie8 DNA MER1_type -2176 241 28 266 365 17 0 chr1 57870491 57870606 -224323058 + MIR SINE MIR 33 149 -59 465 305 126 53 chr1 57872101 57872419 -224321245 - L2 LINE L2 -1 3271 2931 343 254 0 88 chr1 57872583 57872697 -224320967 + MIR3 SINE MIR 94 197 -11 2218 87 14 0 chr1 57873154 57873441 -224320223 + AluSx SINE Alu 1 291 -21 1796 135 0 66 chr1 57873448 57873767 -224319897 + AluJo SINE Alu 1 298 -14 1480 188 43 16 chr1 57873856 57874160 -224319504 + AluJo SINE Alu 1 312 0 1860 145 0 0 chr1 57874369 57874676 -224318988 - AluJb SINE Alu 0 307 1 227 253 127 0 chr1 57874795 57874874 -224318790 - MER103 DNA DNA -70 96 8 2300 93 3 0 chr1 57875012 57875312 -224318352 - AluSp SINE Alu -12 301 1 271 308 137 41 chr1 57875412 57875558 -224318106 - MIR SINE MIR -50 212 53 823 236 40 52 chr1 57875687 57875937 -224317727 + MIR SINE MIR 15 261 -1 343 239 98 0 chr1 57876541 57876633 -224317031 + MIR3 SINE MIR 107 207 -1 330 301 89 14 chr1 57877124 57877270 -224316394 + MIR SINE MIR 106 262 0 364 284 171 17 chr1 57877445 57877621 -224316043 - MIR SINE MIR -3 259 57 2068 92 7 26 chr1 57879161 57879464 -224314200 - AluSx SINE Alu -15 297 1 516 285 154 21 chr1 57879571 57880185 -224313479 + L2 LINE L2 2510 3272 -41 208 312 54 54 chr1 57880654 57880875 -224312789 + L2 LINE L2 2924 3144 -128 1873 166 210 7 chr1 57880922 57881345 -224312319 + LTR22 LTR ERVK 1 509 0 240 290 90 62 chr1 57881475 57881620 -224312044 - MIR3 SINE MIR -21 187 39 763 144 0 0 chr1 57881772 57881883 -224311781 + FLAM_C SINE Alu 21 131 -12 280 277 59 36 chr1 57882023 57882234 -224311430 + MIR SINE MIR 15 225 -37 438 309 73 0 chr1 57882351 57882516 -224311148 + MER117 DNA MER1_type 13 189 -8 255 292 117 52 chr1 57882668 57882822 -224310842 + MLT1K LTR MaLR 13 176 -412 559 255 25 69 chr1 57882854 57883058 -224310606 + MLT1K LTR MaLR 316 510 -78 986 165 14 52 chr1 57883073 57883285 -224310379 - MER3 DNA MER1_type 0 209 6 251 353 25 25 chr1 57883820 57883942 -224309722 + MIR3 SINE MIR 33 154 -54 212 300 62 0 chr1 57884597 57884677 -224308987 + MIR SINE MIR 108 192 -70 251 226 81 0 chr1 57884776 57884838 -224308826 - MIR SINE MIR -79 183 117 183 288 61 0 chr1 57885264 57885330 -224308334 + MIR SINE MIR 79 148 -114 248 258 81 8 chr1 57885586 57885710 -224307954 + L2 LINE L2 2624 2756 -558 458 262 154 18 chr1 57886055 57886334 -224307330 - MER113 DNA MER1_type? -203 318 2 356 250 105 8 chr1 57886349 57886473 -224307191 - MIR SINE MIR -56 152 17 319 265 64 18 chr1 57886816 57886972 -224306692 - MIR SINE MIR -27 181 11 317 178 93 37 chr1 57887395 57887502 -224306162 + L2 LINE L2 2945 3057 -215 514 206 194 29 chr1 57887576 57887746 -224305918 + MER63A DNA MER1_type 11 208 -2 1193 143 27 49 chr1 57888294 57888517 -224305147 - MER20 DNA MER1_type -1 218 1 638 299 116 33 chr1 57888719 57889228 -224304436 - L2 LINE L2 -49 3223 2658 225 281 198 16 chr1 57889276 57889397 -224304267 - MER46C DNA MER2_type -74 264 122 2297 98 0 3 chr1 57889397 57889702 -224303962 + AluSx SINE Alu 1 304 -8 700 189 6 13 chr1 57889730 57889889 -224303775 - L1MB3 LINE L1 0 6183 6026 264 356 121 14 chr1 57889910 57890191 -224303473 + L2 LINE L2 1052 1362 -1952 2263 82 0 0 chr1 57890191 57890485 -224303179 - AluSx SINE Alu -18 294 1 333 155 0 0 chr1 57890726 57890784 -224302880 + (TG)n Simple_repeat Simple_repeat 2 59 0 240 324 0 0 chr1 57890803 57890871 -224302793 - L2 LINE L2 -213 3059 2992 474 234 63 2 chr1 57891717 57891874 -224301790 + L1MB7 LINE L1 5713 5894 -290 1365 104 126 4 chr1 57891972 57892203 -224301461 + AluSx SINE Alu 45 303 -9 22 56 0 0 chr1 57892343 57892379 -224301285 + AT_rich Low_complexity Low_complexity 1 36 0 296 294 35 94 chr1 57892617 57892872 -224300792 + MIR SINE MIR 14 253 -9 265 241 25 38 chr1 57894302 57894381 -224299283 + MIR SINE MIR 97 174 -88 211 313 88 14 chr1 57895044 57895204 -224298460 + MIR SINE MIR 32 203 -59 260 336 84 42 chr1 57895605 57895662 -224298002 + L2 LINE L2 2918 2971 -301 837 159 0 0 chr1 57895662 57895794 -224297870 + FLAM_C SINE Alu 1 132 -1 260 336 84 42 chr1 57895794 57896022 -224297642 + L2 LINE L2 2971 3215 -57 281 277 36 0 chr1 57896176 57896259 -224297405 + MIR SINE MIR 68 153 -109 295 294 55 34 chr1 57896689 57896835 -224296829 + MIR SINE MIR 51 199 -63 463 308 76 22 chr1 57897589 57897813 -224295851 + L2 LINE L2 2813 3048 -224 747 234 23 6 chr1 57897813 57897988 -224295676 + MER45A DNA AcHobo 1 178 0 272 253 25 0 chr1 57898088 57898167 -224295497 + L2 LINE L2 3187 3267 -5 216 266 58 43 chr1 57898588 57898727 -224294937 + L2 LINE L2 1321 1461 -1853 209 343 29 0 chr1 57898835 57898905 -224294759 + MIR SINE MIR 10 81 -181 328 182 60 75 chr1 57899261 57899401 -224294263 + MER20 DNA MER1_type 3 135 -84 2224 102 0 3 chr1 57899412 57899725 -224293939 + AluSx SINE Alu 1 312 0 758 263 156 99 chr1 57900604 57901593 -224292071 + HAL1 LINE L1 529 1573 -934 2208 113 3 0 chr1 57901624 57901933 -224291731 - AluSx SINE Alu 0 312 3 586 284 66 92 chr1 57902071 57902352 -224291312 + HAL1 LINE L1 1892 2179 -328 1745 114 9 108 chr1 57902352 57902693 -224290971 - AluJb SINE Alu 0 312 6 586 284 66 92 chr1 57902693 57902809 -224290855 + HAL1 LINE L1 2179 2280 -227 2319 100 0 3 chr1 57902809 57903119 -224290545 - AluSx SINE Alu -3 309 1 586 284 66 92 chr1 57903119 57903142 -224290522 + HAL1 LINE L1 2280 2302 -205 251 102 0 82 chr1 57903143 57903192 -224290472 + L1MB7 LINE L1 6128 6172 -12 575 241 106 39 chr1 57904308 57904515 -224289149 + L2 LINE L2 3081 3301 -12 378 0 0 0 chr1 57904520 57904562 -224289102 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 232 343 50 10 chr1 57904580 57904679 -224288985 + MIR3 SINE MIR 96 198 -10 237 236 33 105 chr1 57904786 57904946 -224288718 + L2 LINE L2 2258 2391 -923 809 156 0 22 chr1 57904946 57905081 -224288583 - FLAM_C SINE Alu -1 132 1 237 236 33 105 chr1 57905081 57905196 -224288468 + L2 LINE L2 2391 2513 -801 820 133 8 31 chr1 57905223 57905351 -224288313 - FLAM_C SINE Alu -10 133 9 2176 268 73 54 chr1 57905477 57906462 -224287202 - L1MEd LINE L1 -5000 1119 111 1865 123 3 38 chr1 57906462 57906778 -224286886 - AluSq SINE Alu -8 305 1 2176 268 73 54 chr1 57906778 57906850 -224286814 - L1MEd LINE L1 -6008 111 42 429 304 43 27 chr1 57906855 57906920 -224286744 + L2 LINE L2 2648 2710 -604 2135 112 3 0 chr1 57906920 57907216 -224286448 + AluSp SINE Alu 3 299 -14 429 304 43 27 chr1 57907216 57907334 -224286330 + L2 LINE L2 2710 2834 -480 186 275 220 0 chr1 57907332 57907423 -224286241 + L2 LINE L2 3162 3272 0 * 404 269 50 60 chr1 57907442 57907643 -224286021 - MIR SINE MIR -42 220 22 268 313 50 86 chr1 57907956 57908317 -224285347 - L2 LINE L2 -5 3267 2920 495 296 92 10 chr1 57909413 57909619 -224284045 + MIR SINE MIR 24 246 -16 2184 94 7 0 chr1 57909645 57909942 -224283722 - AluSx SINE Alu -13 299 1 805 147 0 0 chr1 57910011 57910127 -224283537 + FLAM_C SINE Alu 1 116 -17 225 0 0 0 chr1 57910127 57910152 -224283512 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 455 289 123 26 chr1 57910161 57910469 -224283195 + L1ME3 LINE L1 5606 5943 -219 370 250 55 52 chr1 57910603 57910776 -224282888 + L1MC5 LINE L1 7810 7992 -3 274 335 71 13 chr1 57911284 57911439 -224282225 - MIR3 SINE MIR -41 167 4 444 266 28 28 chr1 57911937 57912080 -224281584 + MIR SINE MIR 32 174 -88 40 79 0 0 chr1 57912275 57912364 -224281300 + GC_rich Low_complexity Low_complexity 1 89 0 34 55 0 0 chr1 57912520 57912575 -224281089 + GC_rich Low_complexity Low_complexity 1 55 0 425 284 31 8 chr1 57913033 57913160 -224280504 - MIR SINE MIR -112 150 21 226 337 43 0 chr1 57913571 57913663 -224280001 + L3 LINE CR1 1394 1489 -88 276 330 26 46 chr1 57913768 57913962 -224279702 - L2 LINE L2 -213 3059 2870 298 230 0 14 chr1 57913969 57914043 -224279621 + L2 LINE L2 2905 2977 -295 250 154 62 15 chr1 57914074 57914137 -224279527 - MER69 DNA AcHobo -20 2506 2441 400 138 0 0 chr1 57914137 57914195 -224279469 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 2044 119 10 26 chr1 57914195 57914505 -224279159 - AluSx SINE Alu -7 305 1 3164 109 26 28 chr1 57914524 57914878 -224278786 + Tigger4(Zombi) DNA MER2_type 2200 2554 -177 2222 90 3 26 chr1 57914878 57915190 -224278474 + AluSp SINE Alu 1 305 -8 3164 109 26 28 chr1 57915190 57915368 -224278296 + Tigger4(Zombi) DNA MER2_type 2554 2731 0 436 193 23 11 chr1 57915374 57915462 -224278202 - MER69 DNA AcHobo -2430 96 8 401 245 37 104 chr1 57915507 57915670 -224277994 + L2 LINE L2 2992 3143 -129 206 379 0 29 chr1 57915842 57915945 -224277719 - MIR SINE MIR 0 262 163 * 405 192 56 38 chr1 57915924 57916024 -224277640 + MIR SINE MIR 101 201 -23 1742 137 23 33 chr1 57916024 57916169 -224277495 + AluJb SINE Alu 1 146 -166 2122 112 3 0 chr1 57916169 57916463 -224277201 + AluSp SINE Alu 1 295 -18 1742 137 23 33 chr1 57916463 57916624 -224277040 + AluJb SINE Alu 146 304 -8 405 192 56 38 chr1 57916624 57916636 -224277028 + MIR SINE MIR 201 211 -13 188 216 59 0 chr1 57916671 57916722 -224276942 - MIR SINE MIR -101 161 108 2065 104 0 41 chr1 57917214 57917531 -224276133 + AluSx SINE Alu 1 304 -8 218 340 11 11 chr1 57917531 57917625 -224276039 - MIR SINE MIR -52 210 117 305 234 39 0 chr1 57917812 57917889 -224275775 + MIR SINE MIR 107 186 -76 345 226 41 75 chr1 57918252 57918398 -224275266 + MIR3 SINE MIR 66 206 -2 420 284 43 7 chr1 57918696 57918837 -224274827 + MIR SINE MIR 111 256 -6 895 146 20 7 chr1 57918843 57918994 -224274670 + AluJo SINE Alu 21 173 -139 1187 244 66 57 chr1 57918995 57919372 -224274292 + L2 LINE L2 2666 3038 -275 2385 89 3 3 chr1 57919372 57919674 -224273990 - AluSx SINE Alu -10 302 1 1187 244 66 57 chr1 57919674 57919828 -224273836 + L2 LINE L2 3038 3206 -107 549 202 123 0 chr1 57919828 57919942 -224273722 - FLAM_A SINE Alu -5 128 1 1187 244 66 57 chr1 57919942 57920043 -224273621 + L2 LINE L2 3206 3305 -8 233 357 107 7 chr1 57920176 57920316 -224273348 + MIR SINE MIR 33 186 -76 2352 113 3 0 chr1 57920540 57920850 -224272814 - AluSx SINE Alu -1 311 1 986 97 0 0 chr1 57921589 57921713 -224271951 + AluJb SINE Alu 1 124 -188 1987 165 49 5 chr1 57921809 57922162 -224271502 + MLT1A1 LTR MaLR 1 455 -2 791 215 6 0 chr1 57922669 57922832 -224270832 - MIR SINE MIR -51 211 48 2135 102 35 0 chr1 57922837 57923122 -224270542 + AluSq SINE Alu 1 295 -18 328 267 111 23 chr1 57924296 57924468 -224269196 - MIR SINE MIR -19 243 57 210 235 191 35 chr1 57925287 57925402 -224268262 + L2 LINE L2 2728 2860 -454 304 320 60 27 chr1 57925527 57925677 -224267987 + L2 LINE L2 3159 3313 0 681 110 153 25 chr1 57925731 57925849 -224267815 - FLAM_C SINE Alu 0 133 1 482 255 192 0 chr1 57925988 57926196 -224267468 - L2 LINE L2 -782 2532 2285 39 50 0 0 chr1 57926991 57927051 -224266613 + GC_rich Low_complexity Low_complexity 1 60 0 252 264 177 12 chr1 57928066 57928262 -224265402 - MIR3 SINE MIR -31 231 3 722 236 35 10 chr1 57929146 57929349 -224264315 - MIR SINE MIR -39 223 16 727 234 112 0 chr1 57929481 57929669 -224263995 + MIR SINE MIR 33 241 -21 1793 152 10 30 chr1 57929887 57930184 -224263480 - AluJo SINE Alu -21 291 1 300 293 167 5 chr1 57930197 57930353 -224263311 - MIR SINE MIR -74 188 10 829 229 36 87 chr1 57932280 57932329 -224261335 + MIR SINE MIR 2 52 -210 2171 80 3 67 chr1 57932329 57932643 -224261021 - AluSq SINE Alu -19 294 1 829 229 36 87 chr1 57932643 57932868 -224260796 + MIR SINE MIR 52 262 0 2091 115 7 10 chr1 57932869 57933164 -224260500 - AluSx SINE Alu -18 294 1 854 216 17 6 chr1 57933337 57933513 -224260151 + MER5A DNA MER1_type 2 179 -10 230 331 80 15 chr1 57933516 57933779 -224259885 + L2 LINE L2 2467 2746 -568 1373 197 58 4 chr1 57933938 57934197 -224259467 + AluJo SINE Alu 26 298 -14 808 188 183 22 chr1 57934443 57934667 -224258997 + MIR SINE MIR 3 262 0 548 332 4 44 chr1 57934732 57934982 -224258682 + MIR SINE MIR 8 247 -15 23 0 0 0 chr1 57935026 57935049 -224258615 + AT_rich Low_complexity Low_complexity 1 23 0 326 191 85 21 chr1 57935062 57935156 -224258508 - MIR SINE MIR -77 185 86 2008 116 4 4 chr1 57935254 57935529 -224258135 - AluSx SINE Alu -17 295 21 1991 118 24 10 chr1 57935535 57935823 -224257841 - AluJb SINE Alu -18 294 3 2223 104 3 7 chr1 57935830 57936128 -224257536 - AluSx SINE Alu -15 297 1 231 258 61 0 chr1 57936208 57936274 -224257390 - MIR SINE MIR 0 262 193 204 118 29 0 chr1 57936633 57936667 -224256997 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 24 53 0 0 chr1 57937658 57937696 -224255968 + AT_rich Low_complexity Low_complexity 1 38 0 2084 132 7 0 chr1 57939044 57939340 -224254324 + AluSx SINE Alu 1 298 -14 331 99 14 14 chr1 57939340 57939411 -224254253 + (TA)n Simple_repeat Simple_repeat 2 72 0 2031 85 8 4 chr1 57939688 57939948 -224253716 - AluSp SINE Alu -14 299 39 1187 205 131 11 chr1 57939981 57940249 -224253415 + AluJb SINE Alu 2 301 -1 2136 115 16 0 chr1 57940647 57940951 -224252713 - AluSx SINE Alu -3 309 1 2314 118 0 0 chr1 57941111 57941416 -224252248 + AluSc SINE Alu 1 305 -4 2155 97 35 0 chr1 57941425 57941713 -224251951 + AluSp SINE Alu 1 298 -15 732 131 131 5 chr1 57941853 57942034 -224251630 - AluJb SINE Alu -15 297 1 250 336 66 38 chr1 57944153 57944340 -224249324 - MIR3 SINE MIR -67 195 6 22 0 0 0 chr1 57944494 57944516 -224249148 + AT_rich Low_complexity Low_complexity 1 22 0 2329 107 0 0 chr1 57944963 57945263 -224248401 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 57945436 57945457 -224248207 + AT_rich Low_complexity Low_complexity 1 21 0 1873 138 30 27 chr1 57946448 57946746 -224246918 - AluJo SINE Alu -13 299 1 1791 159 21 7 chr1 57946790 57947079 -224246585 - AluJb SINE Alu -19 293 1 886 218 37 11 chr1 57947194 57947382 -224246282 - MER20 DNA MER1_type -23 196 4 2041 153 0 3 chr1 57948020 57948315 -224245349 - AluJb SINE Alu -18 294 1 2100 123 7 3 chr1 57949217 57949517 -224244147 + AluSx SINE Alu 1 301 -11 2555 80 0 0 chr1 57949797 57950109 -224243555 + AluSx SINE Alu 1 312 0 2112 109 22 19 chr1 57950532 57950843 -224242821 - AluSx SINE Alu 0 312 1 22 35 0 0 chr1 57951479 57951508 -224242156 + AT_rich Low_complexity Low_complexity 1 29 0 525 222 210 0 chr1 57951682 57951849 -224241815 + L2 LINE L2 3103 3304 -9 6367 118 54 81 chr1 57952009 57952240 -224241424 + Tigger3b DNA MER2_type 5 241 -2787 1216 176 34 21 chr1 57952240 57952473 -224241191 - MER46A DNA MER2_type 0 236 1 6367 118 54 81 chr1 57952473 57952572 -224241092 + Tigger3b DNA MER2_type 241 341 -2687 2160 128 7 0 chr1 57952572 57952862 -224240802 - AluSx SINE Alu -16 296 5 6367 118 54 81 chr1 57952862 57952874 -224240790 + Tigger3b DNA MER2_type 341 352 -2676 1936 125 17 14 chr1 57952874 57953162 -224240502 - AluSx SINE Alu -23 289 1 6367 118 54 81 chr1 57953162 57954077 -224239587 + Tigger3b DNA MER2_type 352 1230 -1 254 298 0 26 chr1 57955058 57955172 -224238492 + GA-rich Low_complexity Low_complexity 3 113 0 1911 74 0 4 chr1 57955679 57955908 -224237756 + AluSx SINE Alu 64 291 -21 2234 95 44 0 chr1 57956283 57956578 -224237086 + AluSq SINE Alu 2 309 -4 1343 101 254 0 chr1 57956695 57956923 -224236741 - AluSg SINE Alu -14 286 1 2619 62 0 0 chr1 57956941 57957248 -224236416 - AluY SINE Alu -4 307 1 8478 126 42 45 chr1 57957901 57958329 -224235335 + Tigger1 DNA MER2_type 886 1314 -1104 2153 110 7 0 chr1 57958329 57958634 -224235030 + AluSx SINE Alu 1 307 0 8478 126 42 45 chr1 57958634 57958931 -224234733 + Tigger1 DNA MER2_type 1314 1611 -807 2210 103 13 7 chr1 57958931 57959231 -224234433 + AluSq SINE Alu 1 302 -11 8478 126 42 45 chr1 57959231 57959843 -224233821 + Tigger1 DNA MER2_type 1611 2221 -197 2419 81 0 3 chr1 57959843 57960141 -224233523 - AluSq SINE Alu -13 300 4 8478 126 42 45 chr1 57960141 57960316 -224233348 + Tigger1 DNA MER2_type 2221 2395 -23 648 151 0 0 chr1 57960323 57960416 -224233248 + AluJ/FLAM SINE Alu 2 94 -218 203 316 13 0 chr1 57960708 57960787 -224232877 + MIR3 SINE MIR 108 187 -21 10994 197 52 58 chr1 57960842 57961073 -224232591 + L1MB3 LINE L1 1287 1518 -4901 2158 119 3 0 chr1 57961073 57961367 -224232297 - AluSx SINE Alu -17 295 1 10994 197 52 58 chr1 57961367 57961582 -224232082 + L1MB3 LINE L1 1518 1733 -4686 2200 109 0 40 chr1 57961582 57961727 -224231937 + AluSq SINE Alu 1 150 -163 1946 142 27 0 chr1 57961727 57962022 -224231642 + AluSx SINE Alu 1 303 -9 2200 109 0 40 chr1 57962022 57962197 -224231467 + AluSq SINE Alu 150 308 -5 10994 197 52 58 chr1 57962197 57963258 -224230406 + L1MB3 LINE L1 1733 2799 -3620 2247 116 0 0 chr1 57963258 57963561 -224230103 + AluSx SINE Alu 1 303 -9 10994 197 52 58 chr1 57963561 57964255 -224229409 + L1MB3 LINE L1 2799 3496 -2923 706 147 0 0 chr1 57964255 57964357 -224229307 + U6 snRNA snRNA 1 102 -5 2448 87 0 7 chr1 57964357 57964666 -224228998 - AluSx SINE Alu -5 307 1 10994 197 52 58 chr1 57964666 57965317 -224228347 + L1MB3 LINE L1 3495 4148 -2271 2383 115 3 35 chr1 57965317 57965665 -224227999 - MER1B DNA MER1_type 0 337 1 10994 197 52 58 chr1 57965665 57966238 -224227426 + L1MB3 LINE L1 4148 4723 -1696 1822 138 0 107 chr1 57966238 57966585 -224227079 - AluJb SINE Alu -2 310 1 10994 197 52 58 chr1 57966585 57968016 -224225648 + L1MB3 LINE L1 4723 6419 0 327 279 48 74 chr1 57968118 57968387 -224225277 - L2 LINE L2 -42 3271 3010 1729 52 0 0 chr1 57968395 57968606 -224225058 + L1PA4 LINE L1 809 1019 -5127 * 26025 32 2 0 chr1 57968588 57973445 -224220219 + L1PA4 LINE L1 1309 6175 0 584 256 95 11 chr1 57973454 57973648 -224220016 - L2 LINE L2 -307 3006 2799 1611 279 69 2 chr1 57973650 57974126 -224219538 - L2 LINE L2 -772 2542 2035 409 316 38 33 chr1 57974088 57974341 -224219323 + MIR SINE MIR 6 262 0 * 1940 120 55 0 chr1 57975173 57975447 -224218217 - AluSx SINE Alu -21 291 3 200 284 69 86 chr1 57975722 57975838 -224217826 + MIR SINE MIR 38 151 -111 25 51 0 0 chr1 57975838 57975877 -224217787 + AT_rich Low_complexity Low_complexity 1 39 0 293 333 125 0 chr1 57976591 57976735 -224216929 - L1ME3A LINE L1 -15 6155 5994 1472 178 34 41 chr1 57976806 57977099 -224216565 - AluJo SINE Alu -13 299 9 1184 140 65 0 chr1 57977100 57977314 -224216350 - L1MD3 LINE L1 -10 7985 7758 315 122 0 0 chr1 57977447 57977496 -224216168 + (CA)n Simple_repeat Simple_repeat 2 50 0 728 188 146 38 chr1 57978244 57978457 -224215207 - MER46A DNA MER2_type 0 236 1 1640 191 7 13 chr1 57978828 57979127 -224214537 - AluJb SINE Alu -15 297 1 365 274 10 10 chr1 57979145 57979247 -224214417 + MIR SINE MIR 161 262 0 2625 40 0 0 chr1 57980002 57980300 -224213364 - AluY SINE Alu -13 298 1 491 304 77 0 chr1 57980336 57980504 -224213160 + MIR SINE MIR 76 256 -6 266 329 112 6 chr1 57980703 57980873 -224212791 - MARNA DNA Mariner -203 383 196 1894 147 10 3 chr1 57981216 57981515 -224212149 + AluSx SINE Alu 1 301 -11 1964 136 7 14 chr1 57981524 57981818 -224211846 + AluSx SINE Alu 1 292 -20 1992 132 0 31 chr1 57982359 57982678 -224210986 + AluJo SINE Alu 4 312 0 1625 175 53 17 chr1 57983240 57983600 -224210064 + L1M4 LINE L1 4808 5180 -966 500 146 62 0 chr1 57983572 57983668 -224209996 + L1M LINE L1 5327 5428 -750 * 2028 91 0 46 chr1 57983668 57983804 -224209860 + AluSx SINE Alu 1 142 -170 2187 101 0 0 chr1 57983804 57984091 -224209573 + AluSc SINE Alu 1 287 -22 294 87 0 0 chr1 57984096 57984142 -224209522 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2028 91 0 46 chr1 57984142 57984284 -224209380 + AluSx SINE Alu 146 272 -40 32 0 0 0 chr1 57984474 57984506 -224209158 + AT_rich Low_complexity Low_complexity 1 32 0 1837 119 65 4 chr1 57984590 57984868 -224208796 + AluSc SINE Alu 1 295 -14 558 200 52 0 chr1 57985034 57985149 -224208515 - FLAM_A SINE Alu -12 121 1 869 220 6 0 chr1 57985168 57985345 -224208319 - L1PB4 LINE L1 -3 6153 5976 423 354 91 33 chr1 57985596 57985960 -224207704 + L2 LINE L2 2374 2758 -556 1988 88 21 97 chr1 57986012 57986341 -224207323 + AluYb8 SINE Alu 1 304 -14 233 314 119 8 chr1 57986569 57986687 -224206977 + L2 LINE L2 2709 2839 -475 218 349 47 27 chr1 57986694 57986843 -224206821 + MER5B DNA MER1_type 3 154 -24 * 268 317 42 42 chr1 57986709 57986851 -224206813 - MER5A DNA MER1_type -19 170 29 257 333 164 51 chr1 57986856 57987246 -224206418 + L2 LINE L2 2836 3269 -3 2325 94 0 3 chr1 57987362 57987660 -224206004 + AluSq SINE Alu 1 297 -16 1908 165 24 0 chr1 57988141 57988438 -224205226 + AluJb SINE Alu 1 304 -8 197 314 0 0 chr1 57988672 57988723 -224204941 - L2 LINE L2 -18 3295 3245 428 307 57 52 chr1 57988977 57989139 -224204525 + MIR3 SINE MIR 8 173 -35 1959 148 3 3 chr1 57989139 57989437 -224204227 - AluSx SINE Alu -6 306 9 428 307 57 52 chr1 57989437 57989466 -224204198 + MIR3 SINE MIR 173 200 -8 677 263 129 14 chr1 57989660 57989877 -224203787 - MIR SINE MIR -9 253 12 557 155 134 0 chr1 57990425 57990522 -224203142 - FLAM_A SINE Alu -20 122 13 1718 143 7 49 chr1 57990575 57990745 -224202919 - AluJb SINE Alu -18 294 141 2292 62 45 0 chr1 57990745 57991033 -224202631 - AluY SINE Alu -10 301 1 1718 143 7 49 chr1 57991033 57991169 -224202495 - AluJb SINE Alu -171 141 1 444 313 40 7 chr1 57991803 57991953 -224201711 + L2 LINE L2 2255 2409 -905 237 125 0 0 chr1 57991974 57992014 -224201650 + Alu SINE Alu 94 133 -170 1553 148 12 97 chr1 57992029 57992360 -224201304 + AluJb SINE Alu 1 303 -9 780 259 66 29 chr1 57992778 57993021 -224200643 - MIR SINE MIR -1 261 10 5576 54 0 1 chr1 57993633 57994335 -224199329 + L1PA8 LINE L1 5471 6171 -1 23 33 0 0 chr1 57994380 57994410 -224199254 + AT_rich Low_complexity Low_complexity 1 30 0 185 267 0 70 chr1 57994567 57994653 -224199011 - L3 LINE CR1 -1169 408 329 224 386 83 23 chr1 57994999 57995385 -224198279 + L2 LINE L2 2844 3252 -20 2014 158 0 3 chr1 57995703 57995995 -224197669 - AluJb SINE Alu -19 293 3 2199 104 3 13 chr1 57996078 57996387 -224197277 + AluSq SINE Alu 1 306 -7 457 229 229 5 chr1 57996730 57996953 -224196711 + L1ME4a LINE L1 5845 6117 -4 2542 74 3 0 chr1 57997462 57997774 -224195890 + AluSq SINE Alu 1 313 0 43 20 0 0 chr1 57998775 57998825 -224194839 + AT_rich Low_complexity Low_complexity 1 50 0 228 286 40 109 chr1 58000009 58000184 -224193480 - L2 LINE L2 -938 2376 2214 808 266 28 12 chr1 58000654 58000894 -224192770 - MIR SINE MIR -10 252 14 284 0 28 0 chr1 58003361 58003397 -224190267 + (ATG)n Simple_repeat Simple_repeat 2 38 0 1960 135 4 0 chr1 58006569 58006874 -224186790 + AluSx SINE Alu 1 306 0 212 300 67 11 chr1 58007656 58007746 -224185918 + MIR SINE MIR 88 182 -80 261 343 37 30 chr1 58008231 58008365 -224185299 + MLT1K LTR MaLR 139 273 -315 2093 150 29 0 chr1 58008414 58008761 -224184903 + MLT2D LTR ERVL 1 357 -57 210 37 0 0 chr1 58008761 58008788 -224184876 + (TC)n Simple_repeat Simple_repeat 2 28 0 309 314 19 9 chr1 58008788 58008893 -224184771 + L1MC4 LINE L1 6614 6719 -1323 202 312 149 28 chr1 58008975 58009116 -224184548 + MIR SINE MIR 91 248 -14 249 365 44 22 chr1 58009259 58009396 -224184268 - L2 LINE L2 0 3272 3133 192 232 0 54 chr1 58009494 58009550 -224184114 - L2 LINE L2 -182 3090 3038 2796 173 33 34 chr1 58009788 58010444 -224183220 + L1M4c LINE L1 1328 2077 -4307 2414 98 0 0 chr1 58010492 58010797 -224182867 + AluSx SINE Alu 1 305 -7 261 204 28 93 chr1 58010810 58010842 -224182822 + L1M4c LINE L1 2073 2106 -4278 1464 171 87 0 chr1 58010842 58011117 -224182547 - AluJo SINE Alu -13 299 1 261 204 28 93 chr1 58011117 58011192 -224182472 + L1M4c LINE L1 2106 2173 -4211 * 437 177 62 10 chr1 58011173 58011269 -224182395 + L1MB4 LINE L1 6032 6132 -48 397 98 20 108 chr1 58011328 58011430 -224182234 + L1MB4 LINE L1 6088 6180 0 2390 98 0 0 chr1 58011591 58011898 -224181766 - AluSx SINE Alu -5 307 1 2168 124 3 0 chr1 58012234 58012532 -224181132 + AluSx SINE Alu 1 299 -13 1555 166 31 42 chr1 58012622 58012911 -224180753 + AluJb SINE Alu 2 287 -25 474 18 0 0 chr1 58012921 58012976 -224180688 + (CA)n Simple_repeat Simple_repeat 2 56 0 236 188 0 0 chr1 58013020 58013068 -224180596 - L2 LINE L2 -1 3312 3265 2209 115 0 3 chr1 58013390 58013694 -224179970 - AluSx SINE Alu -9 303 1 326 246 146 31 chr1 58013798 58013928 -224179736 + MIR SINE MIR 118 262 0 510 17 0 0 chr1 58014246 58014305 -224179359 + (TATG)n Simple_repeat Simple_repeat 2 60 0 602 154 19 0 chr1 58014315 58014419 -224179245 - FLAM_C SINE Alu -37 106 1 903 149 44 14 chr1 58014422 58014666 -224178998 - MER33 DNA MER1_type -38 286 1 435 228 376 0 chr1 58015255 58015444 -224178220 - MIR SINE MIR -1 261 2 229 330 39 19 chr1 58015576 58015679 -224177985 + MIR SINE MIR 124 228 -34 2986 149 7 57 chr1 58016113 58016623 -224177041 + L1MB3 LINE L1 5609 6086 -97 2276 107 0 0 chr1 58016623 58016923 -224176741 - AluSq SINE Alu -13 300 1 2986 149 7 57 chr1 58016923 58017010 -224176654 + L1MB3 LINE L1 6086 6176 -7 2156 119 3 22 chr1 58017127 58017445 -224176219 - AluSx SINE Alu 0 312 1 261 374 84 62 chr1 58017593 58018010 -224175654 - L2 LINE L2 -2 3270 2845 183 281 178 35 chr1 58018104 58018335 -224175329 - L2 LINE L2 -458 2856 2593 267 277 43 53 chr1 58018587 58018681 -224174983 - L2 LINE L2 -213 3059 2967 288 324 205 5 chr1 58018721 58018906 -224174758 - L2 LINE L2 -836 2478 2257 1974 131 38 3 chr1 58019444 58019734 -224173930 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 58019872 58019896 -224173768 + AT_rich Low_complexity Low_complexity 1 24 0 210 337 67 11 chr1 58020726 58020815 -224172849 + MIR3 SINE MIR 2 95 -113 559 278 76 14 chr1 58021042 58021265 -224172399 + MLT1K LTR MaLR 345 581 -7 216 314 50 50 chr1 58021348 58021488 -224172176 + MIR SINE MIR 97 236 -26 399 310 81 36 chr1 58021651 58021853 -224171811 + MIR SINE MIR 19 225 -37 425 269 60 30 chr1 58021940 58022107 -224171557 + MER104 DNA Tc2 6 177 -3 357 24 0 0 chr1 58022229 58022271 -224171393 + (TG)n Simple_repeat Simple_repeat 1 42 0 24 32 0 0 chr1 58022535 58022566 -224171098 + AT_rich Low_complexity Low_complexity 1 31 0 320 224 99 112 chr1 58023609 58023770 -224169894 - MIR SINE MIR -48 214 56 23 0 0 0 chr1 58025480 58025503 -224168161 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 58025585 58025612 -224168052 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1712 142 32 29 chr1 58025614 58025895 -224167769 - AluJo SINE Alu -30 282 1 522 314 39 6 chr1 58027702 58027858 -224165806 + MIR SINE MIR 54 214 -48 2353 99 0 3 chr1 58028398 58028701 -224164963 - AluSq SINE Alu -10 303 2 228 321 0 0 chr1 58030206 58030262 -224163402 + polypurine Low_complexity Low_complexity 1 56 0 724 196 109 38 chr1 58030395 58030660 -224163004 + L1MC4a LINE L1 5260 5543 -2265 768 186 42 65 chr1 58030673 58030928 -224162736 + MER34B LTR ERV1 10 249 -316 3965 101 36 0 chr1 58030932 58031535 -224162129 + L1PA15 LINE L1 5535 6159 -6 1351 156 82 4 chr1 58031579 58031849 -224161815 - LTR8A LTR ERV1 -53 674 384 251 232 12 37 chr1 58031913 58031995 -224161669 - MER90 LTR ERV1 -495 80 1 1221 129 40 0 chr1 58032203 58032405 -224161259 - MSTB LTR MaLR -4 422 213 807 115 109 0 chr1 58032419 58032575 -224161089 + MER34B LTR ERV1 391 563 -2 551 245 197 0 chr1 58032582 58032790 -224160874 + L1MC4a LINE L1 5547 5795 -2013 22 0 0 0 chr1 58032800 58032822 -224160842 + AT_rich Low_complexity Low_complexity 1 22 0 272 170 71 22 chr1 58032871 58032963 -224160701 + L1MA10 LINE L1 6044 6298 -27 560 288 113 44 chr1 58032977 58033154 -224160510 + L1MC4a LINE L1 5796 5959 -1849 2349 112 0 6 chr1 58033154 58033468 -224160196 + AluSx SINE Alu 1 312 0 560 288 113 44 chr1 58033468 58033634 -224160030 + L1MC4a LINE L1 5959 6163 -1645 1407 192 48 14 chr1 58033840 58034132 -224159532 - AluSq SINE Alu -11 302 1 196 87 0 43 chr1 58034204 58034250 -224159414 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1315 202 4 8 chr1 58034250 58034493 -224159171 - AluJb SINE Alu -32 280 39 414 321 23 0 chr1 58034542 58034673 -224158991 - MIR SINE MIR -109 153 20 839 199 62 6 chr1 58034761 58034937 -224158727 - MER5A DNA MER1_type 0 189 4 23 0 0 0 chr1 58035258 58035281 -224158383 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 58035596 58035628 -224158036 + AT_rich Low_complexity Low_complexity 1 32 0 257 196 20 0 chr1 58035740 58035791 -224157873 - MER5A DNA MER1_type 0 189 138 1545 132 0 0 chr1 58035814 58036027 -224157637 + AluSg/x SINE Alu 100 312 0 2584 171 76 3 chr1 58036311 58036879 -224156785 + L1MD3 LINE L1 7381 7989 -6 2039 131 34 0 chr1 58037259 58037557 -224156107 + AluSx SINE Alu 5 312 0 2461 60 0 19 chr1 58038951 58039267 -224154397 + AluY SINE Alu 1 310 -1 1774 118 54 83 chr1 58039383 58039755 -224153909 - MER46B DNA MER2_type 0 236 1 32 57 0 0 chr1 58040216 58040269 -224153395 + AT_rich Low_complexity Low_complexity 1 53 0 2033 139 0 0 chr1 58040401 58040696 -224152968 + AluSx SINE Alu 1 295 -17 2130 106 3 0 chr1 58041161 58041475 -224152189 + AluSx SINE Alu 1 315 0 479 337 127 26 chr1 58041488 58042022 -224151642 + L1M4 LINE L1 2647 3234 -2912 2201 133 0 0 chr1 58042618 58042919 -224150745 + AluSx SINE Alu 1 301 -11 1837 145 6 35 chr1 58043177 58043494 -224150170 + AluJo SINE Alu 1 308 -4 268 333 9 36 chr1 58043545 58043656 -224150008 - L2 LINE L2 -520 2794 2687 610 271 87 14 chr1 58043794 58044001 -224149663 - MIR SINE MIR -1 261 40 185 367 170 31 chr1 58043993 58044027 -224149637 - L2 LINE L2 -1929 1385 1357 * 2320 104 3 3 chr1 58044027 58044335 -224149329 + AluSp SINE Alu 1 308 -5 185 367 170 31 chr1 58044335 58044623 -224149041 - L2 LINE L2 -1957 1357 1110 664 191 6 12 chr1 58044623 58044785 -224148879 + L1MB3 LINE L1 6022 6182 -1 185 367 170 31 chr1 58044785 58044817 -224148847 - L2 LINE L2 -2204 1110 1084 2362 82 10 3 chr1 58044817 58045122 -224148542 - AluSg SINE Alu -3 307 1 185 367 170 31 chr1 58045122 58045307 -224148357 - L2 LINE L2 -2230 1084 769 457 242 117 0 chr1 58046019 58046139 -224147525 - MIR3 SINE MIR -6 202 69 30 0 0 24 chr1 58046176 58046188 -224147476 + AT_rich Low_complexity Low_complexity 1 12 -28 2311 73 0 7 chr1 58046188 58046475 -224147189 - AluSg SINE Alu -14 296 12 30 0 0 24 chr1 58046475 58046503 -224147161 + AT_rich Low_complexity Low_complexity 12 40 0 245 29 0 0 chr1 58047441 58047475 -224146189 + MER7A DNA MER2_type 67 98 -248 1589 97 5 0 chr1 58047477 58047684 -224145980 - AluSg/x SINE Alu -9 303 96 559 171 27 27 chr1 58047856 58047967 -224145697 + FRAM SINE Alu 54 164 -12 194 321 111 12 chr1 58048177 58048258 -224145406 + MIR SINE MIR 58 146 -62 228 122 0 24 chr1 58048289 58048330 -224145334 + L2 LINE L2 3268 3307 -6 367 309 8 40 chr1 58048541 58048667 -224144997 - L2 LINE L2 -15 3257 3136 437 192 50 50 chr1 58048723 58048843 -224144821 - L1ME4a LINE L1 -30 6091 5972 558 0 0 0 chr1 58048845 58048907 -224144757 + (TA)n Simple_repeat Simple_repeat 1 62 0 1431 165 101 22 chr1 58048909 58049176 -224144488 - AluJb SINE Alu -24 288 1 1288 178 0 0 chr1 58049176 58049401 -224144263 - L1MC3 LINE L1 -370 7415 7191 331 267 0 0 chr1 58049405 58049495 -224144169 - MLT1F1 LTR MaLR -442 125 36 644 114 35 0 chr1 58049496 58049610 -224144054 - L1MC3 LINE L1 -688 7097 6980 959 156 71 0 chr1 58049617 58049771 -224143893 - AluJo SINE Alu -21 291 127 1309 122 48 0 chr1 58049771 58050001 -224143663 - L1MC3 LINE L1 -840 6945 6705 2270 111 0 7 chr1 58050284 58050582 -224143082 - AluSx SINE Alu -16 296 1 329 293 117 42 chr1 58050663 58050754 -224142910 - L2 LINE L2 -72 3241 3158 2013 129 3 20 chr1 58050754 58051056 -224142608 + AluJb SINE Alu 1 297 -15 329 293 117 42 chr1 58051056 58051203 -224142461 - L2 LINE L2 -155 3158 2985 561 316 74 0 chr1 58051254 58051444 -224142220 - MIR SINE MIR -6 256 53 189 74 0 0 chr1 58051799 58051826 -224141838 + (CA)n Simple_repeat Simple_repeat 1 27 0 778 199 0 0 chr1 58051975 58052106 -224141558 - FLAM_A SINE Alu -1 132 2 489 270 18 0 chr1 58052254 58052365 -224141299 + MIR3 SINE MIR 44 156 -52 2087 97 3 24 chr1 58052380 58052711 -224140953 + AluSq SINE Alu 1 325 0 356 260 20 73 chr1 58052787 58052937 -224140727 + MIR3 SINE MIR 66 207 -1 1007 147 6 18 chr1 58052980 58053143 -224140521 + FRAM SINE Alu 1 161 -5 534 274 134 0 chr1 58053224 58053410 -224140254 + MIR SINE MIR 47 257 -5 2329 103 0 0 chr1 58053448 58053750 -224139914 + AluSg SINE Alu 1 302 -8 27 29 0 0 chr1 58053802 58053836 -224139828 + AT_rich Low_complexity Low_complexity 1 34 0 2089 129 0 3 chr1 58053843 58054159 -224139505 + AluSx SINE Alu 1 315 0 312 184 11 81 chr1 58054221 58054308 -224139356 - L1ME4a LINE L1 -115 6006 5926 628 249 26 48 chr1 58054364 58054633 -224139031 - L1ME4a LINE L1 -325 5796 5534 208 307 130 72 chr1 58054789 58055047 -224138617 + L2 LINE L2 557 851 -2463 2135 125 3 0 chr1 58055047 58055343 -224138321 + AluSx SINE Alu 12 308 -4 208 307 130 72 chr1 58055343 58055514 -224138150 + L2 LINE L2 851 1011 -2303 200 304 36 0 chr1 58055527 58055583 -224138081 - L2 LINE L2 -27 3245 3188 340 336 91 9 chr1 58055706 58055926 -224137738 + L2 LINE L2 1743 1980 -1334 * 424 238 39 88 chr1 58055918 58056053 -224137611 + MIR SINE MIR 76 216 -46 2323 90 3 0 chr1 58056053 58056342 -224137322 + AluSp SINE Alu 1 290 -23 424 238 39 88 chr1 58056342 58056355 -224137309 + MIR SINE MIR 216 228 -34 1620 166 33 4 chr1 58056355 58056626 -224137038 + AluJo SINE Alu 27 305 -7 424 238 39 88 chr1 58056626 58056657 -224137007 + MIR SINE MIR 228 247 -15 449 252 6 57 chr1 58056769 58056928 -224136736 - L2 LINE L2 0 3313 3163 580 226 1 52 chr1 58056945 58057029 -224136635 + L1ME1 LINE L1 6009 6096 -88 2163 151 0 0 chr1 58057029 58057341 -224136323 - AluJo SINE Alu 0 312 1 580 226 1 52 chr1 58057341 58057431 -224136233 + L1ME1 LINE L1 6096 6183 -1 1888 285 40 42 chr1 58057442 58057704 -224135960 - L2 LINE L2 -209 3104 2843 2267 106 0 3 chr1 58057704 58058006 -224135658 + AluSg SINE Alu 1 301 -9 1888 285 40 42 chr1 58058006 58058291 -224135373 - L2 LINE L2 -470 2843 2559 2668 45 0 0 chr1 58058291 58058602 -224135062 + AluY SINE Alu 1 311 0 1888 285 40 42 chr1 58058602 58058708 -224134956 - L2 LINE L2 -754 2559 2454 1741 158 0 70 chr1 58058708 58058869 -224134795 - AluJo SINE Alu -18 294 164 2576 57 0 0 chr1 58058869 58059170 -224134494 - AluY SINE Alu -10 301 1 1741 158 0 70 chr1 58059170 58059324 -224134340 - AluJo SINE Alu -148 164 1 1888 285 40 42 chr1 58059324 58059469 -224134195 - L2 LINE L2 -859 2454 2316 1792 120 58 0 chr1 58059478 58059737 -224133927 + AluSx SINE Alu 2 275 -37 207 179 26 0 chr1 58059737 58059776 -224133888 + GA-rich Low_complexity Low_complexity 1 40 0 2598 46 0 3 chr1 58060061 58060367 -224133297 - AluY SINE Alu -6 305 1 201 338 0 0 chr1 58061131 58061199 -224132465 + GA-rich Low_complexity Low_complexity 2 69 0 253 313 125 56 chr1 58061199 58061658 -224132006 + L2 LINE L2 2614 3112 -160 208 351 99 18 chr1 58061720 58061831 -224131833 - MIR SINE MIR -73 135 16 351 0 0 0 chr1 58061857 58061896 -224131768 + (CA)n Simple_repeat Simple_repeat 1 39 0 245 234 16 31 chr1 58061989 58062053 -224131611 + L3 LINE CR1 1508 1570 -7 1976 114 76 0 chr1 58062067 58062189 -224131475 + AluSx SINE Alu 1 112 -200 212 0 36 0 chr1 58062189 58062217 -224131447 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1976 114 76 0 chr1 58062217 58062384 -224131280 + AluSx SINE Alu 112 312 0 509 324 46 34 chr1 58062486 58062724 -224130940 - MIR SINE MIR -6 256 16 333 153 0 0 chr1 58063284 58063356 -224130308 + (TCCA)n Simple_repeat Simple_repeat 1 72 0 317 218 171 6 chr1 58063398 58063568 -224130096 - L2 LINE L2 -159 3113 2916 233 267 89 22 chr1 58063567 58063657 -224130007 - MIR SINE MIR -59 203 108 * 628 268 105 2 chr1 58063666 58063884 -224129780 - MIR SINE MIR -7 255 17 2189 125 0 7 chr1 58063927 58064232 -224129432 + AluSx SINE Alu 1 303 -9 1975 137 3 7 chr1 58064232 58064532 -224129132 + AluSg SINE Alu 1 299 -11 1817 78 0 0 chr1 58064532 58064749 -224128915 + AluSg/x SINE Alu 80 297 -13 836 257 193 22 chr1 58064749 58065263 -224128401 - L2 LINE L2 -9 3304 2677 213 175 0 0 chr1 58065356 58065396 -224128268 + (TG)n Simple_repeat Simple_repeat 1 40 0 201 147 0 0 chr1 58065516 58065550 -224128114 + (TA)n Simple_repeat Simple_repeat 1 34 0 385 314 47 37 chr1 58065565 58065756 -224127908 - L2 LINE L2 -1046 2268 2076 487 284 39 8 chr1 58065852 58065979 -224127685 - L2 LINE L2 -8 3264 3134 514 289 139 10 chr1 58066062 58066256 -224127408 - MIR SINE MIR -31 231 13 908 148 0 109 chr1 58066421 58066631 -224127033 - MER20 DNA MER1_type 0 219 33 2434 80 3 0 chr1 58066738 58067037 -224126627 + AluSx SINE Alu 1 300 -12 910 211 0 0 chr1 58067090 58067256 -224126408 + FRAM SINE Alu 1 163 -13 218 268 56 42 chr1 58067420 58067491 -224126173 + L2 LINE L2 3154 3225 -47 29 28 0 0 chr1 58067510 58067546 -224126118 + AT_rich Low_complexity Low_complexity 1 36 0 1383 175 2 103 chr1 58067790 58068196 -224125468 - MLT1A1 LTR MaLR 0 365 1 233 254 127 99 chr1 58068342 58068396 -224125268 + MIR SINE MIR 50 101 -161 1177 164 44 51 chr1 58068396 58068670 -224124994 + ORSL DNA AcHobo 4 275 0 233 254 127 99 chr1 58068670 58068757 -224124907 + MIR SINE MIR 101 195 -67 191 301 145 24 chr1 58068762 58068845 -224124819 + L2 LINE L2 3200 3292 -21 205 297 232 13 chr1 58069484 58069639 -224124025 + L2 LINE L2 2809 2997 -275 515 351 24 0 chr1 58069800 58070005 -224123659 - MIR SINE MIR -16 246 37 2317 62 41 0 chr1 58070042 58070334 -224123330 - AluY SINE Alu -7 304 1 1704 148 9 83 chr1 58070435 58070772 -224122892 - AluJo SINE Alu 0 312 1 270 269 60 0 chr1 58070811 58070878 -224122786 + L2 LINE L2 3241 3311 -2 2006 151 7 0 chr1 58070901 58071200 -224122464 + AluJb SINE Alu 1 301 -11 308 306 32 8 chr1 58071495 58071619 -224122045 - MIR SINE MIR -73 189 63 1273 250 81 39 chr1 58071805 58072237 -224121427 - LTR16C LTR ERVL -41 450 1 2351 98 0 0 chr1 58072300 58072596 -224121068 + AluSx SINE Alu 1 296 -16 914 185 72 68 chr1 58072633 58072681 -224120983 + MER58A DNA MER1_type 2 48 -2372 2226 101 7 0 chr1 58072681 58072978 -224120686 - AluSx SINE Alu -13 299 1 914 185 72 68 chr1 58072978 58073151 -224120513 + MER58A DNA MER1_type 48 224 0 228 383 53 11 chr1 58073152 58073246 -224120418 - L2 LINE L2 -53 3219 3122 812 139 8 0 chr1 58073336 58073465 -224120199 + FLAM_C SINE Alu 2 131 -2 239 306 37 46 chr1 58073470 58073578 -224120086 - L2 LINE L2 -221 3051 2945 1986 113 56 0 chr1 58073727 58074011 -224119653 + AluSg SINE Alu 1 300 -10 292 129 0 32 chr1 58074017 58074079 -224119585 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 224 297 11 44 chr1 58074146 58074237 -224119427 - L2 LINE L2 -688 2626 2539 192 276 69 0 chr1 58074318 58074376 -224119288 + L2 LINE L2 3153 3214 -58 22 0 0 0 chr1 58074702 58074724 -224118940 + AT_rich Low_complexity Low_complexity 1 22 0 292 208 68 95 chr1 58074739 58074794 -224118870 - L1ME4a LINE L1 -5 6116 6061 2637 39 0 7 chr1 58074794 58075100 -224118564 + AluY SINE Alu 2 305 -6 292 208 68 95 chr1 58075100 58075180 -224118484 - L1ME4a LINE L1 -60 6061 5987 2243 127 7 0 chr1 58075180 58075488 -224118176 - AluSx SINE Alu -2 310 1 292 208 68 95 chr1 58075488 58075572 -224118092 - L1ME4a LINE L1 -134 5987 5902 4435 132 19 41 chr1 58075727 58076331 -224117333 - MER50 LTR ERV1 -16 718 131 2042 121 0 34 chr1 58076331 58076629 -224117035 - AluSx SINE Alu -24 288 1 4435 132 19 41 chr1 58076629 58076758 -224116906 - MER50 LTR ERV1 -603 131 1 222 317 80 71 chr1 58077158 58077369 -224116295 + L2 LINE L2 1994 2202 -1112 1837 162 0 23 chr1 58077369 58077677 -224115987 - AluJo SINE Alu -11 301 1 222 317 80 71 chr1 58077677 58077775 -224115889 + L2 LINE L2 2202 2309 -1005 2380 77 7 3 chr1 58077775 58078073 -224115591 - AluSq SINE Alu -14 299 1 222 317 80 71 chr1 58078073 58078087 -224115577 + L2 LINE L2 2309 2321 -993 1590 108 9 0 chr1 58078271 58078521 -224115143 - AluSg/x SINE Alu 0 317 66 200 264 42 14 chr1 58078536 58078608 -224115056 - L2 LINE L2 -13 3259 3186 2063 101 7 24 chr1 58079716 58080041 -224113623 + AluSx SINE Alu 1 312 0 251 158 0 0 chr1 58080799 58080837 -224112827 - U2 snRNA snRNA -150 38 1 508 282 21 0 chr1 58080907 58081049 -224112615 + MIR SINE MIR 47 191 -71 244 304 88 20 chr1 58081116 58081218 -224112446 - L2 LINE L2 -4 3268 3160 462 277 65 0 chr1 58081472 58081627 -224112037 + MIR SINE MIR 90 254 -8 1613 133 0 133 chr1 58081762 58082109 -224111555 - AluJb SINE Alu -1 301 1 1599 170 0 67 chr1 58082319 58082631 -224111033 - AluJo SINE Alu -21 291 1 225 0 0 0 chr1 58082667 58082692 -224110972 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1016 254 4 8 chr1 58082716 58082972 -224110692 - MIR SINE MIR 0 262 8 2070 116 29 0 chr1 58083005 58083308 -224110356 + AluSq SINE Alu 2 312 0 2186 124 3 0 chr1 58134031 58134330 -224059334 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 58136410 58136432 -224057232 + AT_rich Low_complexity Low_complexity 1 22 0 671 134 9 0 chr1 58137424 58137559 -224056105 + L1M2 LINE L1 1 502 -6707 1839 163 3 3 chr1 58138209 58138492 -224055172 + AluJo SINE Alu 6 288 -24 2155 110 3 16 chr1 58138576 58138885 -224054779 - AluSp SINE Alu -8 305 1 2691 176 31 0 chr1 58138914 58139437 -224054227 - L1MB5 LINE L1 -7 6167 5629 515 219 77 61 chr1 58139510 58139757 -224053907 + MER112 DNA MER1_type 3 253 -3 441 387 6 0 chr1 58139831 58139999 -224053665 + MIR SINE MIR 21 189 -73 476 187 187 66 chr1 58140327 58140394 -224053270 + MER5A DNA MER1_type 3 61 -128 2110 128 3 28 chr1 58140394 58140715 -224052949 + AluSq SINE Alu 1 313 0 476 187 187 66 chr1 58140715 58140813 -224052851 + MER5A DNA MER1_type 61 188 -1 227 86 0 0 chr1 58141353 58141388 -224052276 - L1MA9 LINE L1 0 6312 6278 395 306 50 73 chr1 58141458 58141719 -224051945 - MIR SINE MIR 0 262 8 889 189 24 29 chr1 58142041 58142247 -224051417 - MER20 DNA MER1_type -5 214 10 28 48 0 0 chr1 58142371 58142413 -224051251 + AT_rich Low_complexity Low_complexity 1 42 0 1644 179 54 0 chr1 58143040 58143320 -224050344 + AluJb SINE Alu 1 295 -17 1207 136 0 0 chr1 58143595 58143764 -224049900 + AluSg/x SINE Alu 137 305 -7 737 164 22 22 chr1 58143778 58143912 -224049752 + AluJo SINE Alu 3 136 -176 33 0 0 0 chr1 58143949 58143982 -224049682 + AT_rich Low_complexity Low_complexity 1 33 0 311 286 7 86 chr1 58144076 58144216 -224049448 - MIR3 SINE MIR -12 196 68 205 263 0 0 chr1 58144330 58144368 -224049296 + L2 LINE L2 3242 3279 -34 236 150 50 138 chr1 58144526 58144606 -224049058 + LTR64 LTR ERVK 1 73 -485 1521 178 159 23 chr1 58144606 58144663 -224049001 + LTR64 LTR ERVK 48 96 -462 207 0 0 0 chr1 58144663 58144686 -224048978 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1521 178 159 23 chr1 58144686 58145055 -224048609 + LTR64 LTR ERVK 96 532 -26 24 0 0 0 chr1 58145066 58145090 -224048574 + AT_rich Low_complexity Low_complexity 1 24 0 1751 153 10 42 chr1 58145145 58145453 -224048211 + AluJo SINE Alu 14 311 -1 207 0 0 0 chr1 58145716 58145739 -224047925 + (T)n Simple_repeat Simple_repeat 1 23 0 598 243 56 93 chr1 58146231 58146499 -224047165 - MIR SINE MIR -1 261 4 669 201 24 139 chr1 58146555 58146843 -224046821 - MER112 DNA MER1_type -1 255 1 1831 213 48 70 chr1 58147763 58148331 -224045333 - L1MC4 LINE L1 -1030 7012 6458 2537 182 67 34 chr1 58148617 58149207 -224044457 - L1MC4a LINE L1 -139 7669 7060 2292 102 0 0 chr1 58149207 58149502 -224044162 - AluSq SINE Alu -18 295 1 2537 182 67 34 chr1 58149502 58149639 -224044025 - L1MC4a LINE L1 -748 7060 6929 1155 181 103 29 chr1 58149643 58149908 -224043756 - L1MC4a LINE L1 -1214 6594 6305 16829 32 8 3 chr1 58149908 58152748 -224040916 - L1PA4 LINE L1 0 6155 3307 1155 181 103 29 chr1 58152748 58152763 -224040901 - L1MC4a LINE L1 -1503 6305 6293 1432 211 57 14 chr1 58152765 58153115 -224040549 - MLT1A1 LTR MaLR 0 365 1 873 230 98 54 chr1 58153127 58153450 -224040214 - L1MC4a LINE L1 -1651 6157 5850 530 209 127 0 chr1 58153450 58153560 -224040104 - FLAM_A SINE Alu -9 124 1 873 230 98 54 chr1 58153560 58153639 -224040025 - L1MC4a LINE L1 -1958 5850 5776 216 0 0 0 chr1 58153639 58153663 -224040001 + (TA)n Simple_repeat Simple_repeat 2 25 0 2526 67 3 6 chr1 58153663 58153977 -224039687 - AluSp SINE Alu 0 313 1 873 230 98 54 chr1 58153977 58154051 -224039613 - L1MC4a LINE L1 -2031 5777 5658 439 279 82 13 chr1 58154237 58154470 -224039194 - L1MDa LINE L1 -2401 3814 3566 249 214 0 0 chr1 58154479 58154535 -224039129 + MER116 DNA Mariner 25 80 0 568 247 60 72 chr1 58154664 58155134 -224038530 - L1MDa LINE L1 -2828 3387 2924 183 80 0 0 chr1 58156511 58156536 -224037128 + (T)n Simple_repeat Simple_repeat 1 25 0 625 298 26 11 chr1 58156536 58156808 -224036856 - L1MDa LINE L1 -3316 2899 2624 665 292 103 29 chr1 58156830 58157221 -224036443 - L1MDa LINE L1 -3934 2283 1863 657 274 92 42 chr1 58158707 58159307 -224034357 - L1MDa LINE L1 -4564 1651 1082 5477 74 34 51 chr1 58159307 58160668 -224032996 - SVA Other Other -518 1047 38 279 0 0 0 chr1 58160673 58160704 -224032960 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 657 274 92 42 chr1 58160704 58160888 -224032776 - L1MDa LINE L1 -5136 1079 1008 252 273 27 45 chr1 58161123 58161233 -224032431 - L1MDa LINE L1 -5488 717 610 2245 102 0 0 chr1 58161386 58161712 -224031952 - AluSx SINE Alu 0 312 1 379 153 56 0 chr1 58161732 58161804 -224031860 - L1MC1 LINE L1 -21 6312 6237 274 211 0 14 chr1 58161964 58162035 -224031629 - L1MDa LINE L1 -5961 244 175 302 335 83 22 chr1 58162845 58163075 -224030589 - MLT1K LTR MaLR -145 443 200 282 341 8 31 chr1 58163426 58163555 -224030109 + L3 LINE CR1 1418 1543 -34 405 214 0 62 chr1 58163683 58163831 -224029833 - AluSg/x SINE Alu 0 317 177 693 218 36 131 chr1 58164545 58164820 -224028844 + MIR SINE MIR 14 262 0 279 195 39 39 chr1 58164828 58164905 -224028759 + L2 LINE L2 3196 3272 0 1679 159 54 4 chr1 58165252 58165529 -224028135 - AluJb SINE Alu -21 291 1 200 274 126 37 chr1 58165556 58165691 -224027973 + L2 LINE L2 772 918 -2396 5726 90 41 22 chr1 58165824 58166758 -224026906 + L1MA3 LINE L1 5355 6305 0 2195 117 7 3 chr1 58168577 58168885 -224024779 - AluSg SINE Alu -1 309 1 2133 144 0 3 chr1 58169055 58169361 -224024303 - AluSx SINE Alu -7 305 1 22 35 0 0 chr1 58169389 58169418 -224024246 + AT_rich Low_complexity Low_complexity 1 29 0 351 305 42 8 chr1 58170171 58170289 -224023375 - L2 LINE L2 -2 3311 3190 706 172 26 0 chr1 58170305 58170421 -224023243 + FLAM_C SINE Alu 2 120 -13 420 20 0 0 chr1 58170421 58170470 -224023194 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 362 273 0 34 chr1 58170786 58170874 -224022790 - L2 LINE L2 -1 3271 3187 195 42 0 0 chr1 58171232 58171256 -224022408 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3263 115 18 0 chr1 58171256 58171752 -224021912 - L1MC1 LINE L1 -13 6320 5816 221 152 43 22 chr1 58171752 58171798 -224021866 + CT-rich Low_complexity Low_complexity 4 50 0 971 136 0 26 chr1 58171799 58171954 -224021710 - FRAM SINE Alu -6 170 20 1196 156 40 4 chr1 58171959 58172184 -224021480 - L1MC1 LINE L1 -513 5820 5588 * 4155 130 124 138 chr1 58172176 58172197 -224021467 - L1MCa LINE L1 -4794 1632 1612 1893 153 10 10 chr1 58172197 58172505 -224021159 - AluSx SINE Alu -1 311 4 4155 130 124 138 chr1 58172505 58172542 -224021122 - L1MCa LINE L1 -4814 1612 1576 2288 95 0 7 chr1 58172542 58172846 -224020818 - AluSg SINE Alu -8 302 1 4155 130 124 138 chr1 58172846 58174177 -224019487 - L1MCa LINE L1 -4850 1576 262 1433 115 35 0 chr1 58174177 58174403 -224019261 - Tigger2 DNA MER2_type -48 2670 2437 1173 190 8 4 chr1 58174411 58174648 -224019016 - L1MCa LINE L1 -6170 256 19 198 0 0 0 chr1 58175394 58175416 -224018248 + (T)n Simple_repeat Simple_repeat 1 22 0 314 360 36 9 chr1 58175655 58175766 -224017898 - L2 LINE L2 -25 3247 3134 499 247 109 6 chr1 58175785 58175959 -224017705 + L1ME2 LINE L1 5961 6152 -12 610 163 49 65 chr1 58175985 58176108 -224017556 + FLAM_A SINE Alu 3 123 -10 673 331 85 59 chr1 58176228 58176915 -224016749 - L2 LINE L2 -267 3005 2301 344 110 4 25 chr1 58176996 58177087 -224016577 - Alu SINE Alu -243 56 1 1511 162 3 57 chr1 58179417 58179739 -224013925 + AluJo SINE Alu 1 306 0 2222 64 3 70 chr1 58179742 58180072 -224013592 + AluSx SINE Alu 4 311 -1 267 370 60 16 chr1 58180814 58180998 -224012666 + L2 LINE L2 2468 2659 -655 398 316 49 102 chr1 58181159 58181570 -224012094 + L2 LINE L2 2869 3257 -15 2148 116 3 0 chr1 58181756 58182057 -224011607 + AluSx SINE Alu 1 302 -10 230 211 19 0 chr1 58182326 58182378 -224011286 + L2 LINE L2 3261 3313 0 22 35 0 0 chr1 58182744 58182773 -224010891 + AT_rich Low_complexity Low_complexity 1 29 0 341 322 12 64 chr1 58182858 58183029 -224010635 - MIR3 SINE MIR -10 198 37 605 282 66 26 chr1 58183256 58183483 -224010181 + LTR33 LTR ERVL 5 240 -281 259 238 163 62 chr1 58183530 58183690 -224009974 + LTR33 LTR ERVL 335 510 -11 240 375 83 36 chr1 58183800 58183968 -224009696 + L2 LINE L2 3078 3253 -19 305 284 110 0 chr1 58184350 58184459 -224009205 - L2 LINE L2 -1 3312 3192 27 49 0 0 chr1 58185643 58185684 -224007980 + AT_rich Low_complexity Low_complexity 1 41 0 342 0 0 0 chr1 58185808 58185846 -224007818 + (TG)n Simple_repeat Simple_repeat 2 39 0 573 217 39 8 chr1 58186150 58186279 -224007385 + MER94 DNA DNA 2 134 0 182 204 245 0 chr1 58187090 58187139 -224006525 - L2 LINE L2 -19 3253 3193 485 222 139 46 chr1 58187188 58187382 -224006282 - MIR SINE MIR -41 221 10 203 333 75 0 chr1 58187544 58187637 -224006027 + MIR SINE MIR 130 229 -33 201 368 86 26 chr1 58188239 58188473 -224005191 - L3 LINE CR1 -1216 361 114 478 173 0 36 chr1 58189627 58189766 -224003898 + CT-rich Low_complexity Low_complexity 4 137 0 262 286 0 14 chr1 58189766 58189836 -224003828 + C-rich Low_complexity Low_complexity 6 74 0 261 275 30 84 chr1 58190343 58190474 -224003190 - L2 LINE L2 -10 3262 3139 1679 139 9 77 chr1 58190694 58191018 -224002646 + AluJo SINE Alu 1 302 -10 449 306 52 15 chr1 58191113 58191247 -224002417 + L3 LINE CR1 1405 1543 -34 21 0 0 0 chr1 58193910 58193931 -223999733 + AT_rich Low_complexity Low_complexity 1 21 0 2064 90 73 10 chr1 58194216 58194504 -223999160 - AluSg SINE Alu -4 306 1 2204 117 17 0 chr1 58195229 58195529 -223998135 - AluSx SINE Alu -7 305 1 216 0 0 0 chr1 58195816 58195840 -223997824 + (T)n Simple_repeat Simple_repeat 1 24 0 2422 87 0 0 chr1 58196041 58196351 -223997313 - AluY SINE Alu -1 310 1 26 39 0 20 chr1 58196945 58196967 -223996697 + AT_rich Low_complexity Low_complexity 1 22 -28 603 147 44 88 chr1 58196967 58197066 -223996598 - FLAM_C SINE Alu -171 131 38 2336 88 3 0 chr1 58197066 58197361 -223996303 + AluSp SINE Alu 1 296 -17 603 147 44 88 chr1 58197361 58197397 -223996267 - FLAM_C SINE Alu -264 38 2 26 39 0 20 chr1 58197397 58197425 -223996239 + AT_rich Low_complexity Low_complexity 22 50 0 1762 179 20 20 chr1 58197576 58197873 -223995791 - AluJo SINE Alu -15 297 1 1131 145 12 0 chr1 58197983 58198155 -223995509 + FAM SINE Alu 1 174 -1 1789 104 97 4 chr1 58199357 58199625 -223994039 - AluSg SINE Alu -17 293 1 946 278 112 59 chr1 58200314 58200803 -223992861 + L2 LINE L2 2700 3246 -67 1459 177 52 96 chr1 58200803 58201210 -223992454 - MLT1B LTR MaLR 0 390 2 946 278 112 59 chr1 58201210 58201282 -223992382 + L2 LINE L2 3246 3313 0 552 253 149 23 chr1 58201472 58201693 -223991971 + MIR SINE MIR 9 257 -5 256 236 0 0 chr1 58201754 58201809 -223991855 + L1MC/D LINE L1 5522 5576 -2466 543 218 59 41 chr1 58202061 58202231 -223991433 - MER5B DNA MER1_type -3 175 3 728 161 54 5 chr1 58202858 58203044 -223990620 - Charlie5 DNA MER1_type -27 2585 2391 1724 166 0 22 chr1 58203075 58203353 -223990311 - AluJo SINE Alu -24 288 17 423 100 0 0 chr1 58203391 58203451 -223990213 + MLT1B LTR MaLR 331 390 0 500 216 0 0 chr1 58203534 58203649 -223990015 - L1MB7 LINE L1 -58 6116 6002 2350 168 0 19 chr1 58203664 58204087 -223989577 + MER47B DNA MER2_type 2 416 -2 818 176 13 14 chr1 58204092 58204276 -223989388 - L1MB7 LINE L1 -178 6006 5845 572 257 46 13 chr1 58205981 58206133 -223987531 + MIR SINE MIR 26 182 -80 1317 184 167 14 chr1 58206422 58206852 -223986812 - LTR54B LTR ERV1 -2 496 1 277 258 56 5 chr1 58207183 58207304 -223986360 - MIR3 SINE MIR -5 203 74 1644 180 19 6 chr1 58208187 58208504 -223985160 - MER2 DNA MER2_type -24 321 1 1565 158 70 30 chr1 58210427 58210725 -223982939 - AluJb SINE Alu 0 312 3 26 0 0 0 chr1 58210725 58210751 -223982913 + AT_rich Low_complexity Low_complexity 1 26 0 2151 123 0 16 chr1 58211251 58211568 -223982096 - AluSx SINE Alu 0 312 1 1699 171 10 20 chr1 58212843 58213147 -223980517 - AluJo SINE Alu -11 301 1 234 300 170 0 chr1 58214663 58214763 -223978901 - L2 LINE L2 -22 3250 3134 465 167 0 22 chr1 58214791 58214871 -223978793 - MLT1A1 LTR MaLR 0 365 288 427 227 68 49 chr1 58214871 58215034 -223978630 - LTR45B LTR ERV1 0 489 324 2119 112 6 38 chr1 58215051 58215364 -223978300 + AluSg SINE Alu 1 303 -7 1966 156 3 3 chr1 58215374 58215675 -223977989 + AluJb SINE Alu 1 301 -11 2600 40 13 0 chr1 58216199 58216503 -223977161 - AluY SINE Alu -3 308 1 2025 99 59 0 chr1 58216503 58216776 -223976888 - AluSq SINE Alu -24 289 1 246 217 87 14 chr1 58217363 58217432 -223976232 + Charlie8 DNA MER1_type 2344 2417 0 341 271 82 0 chr1 58217646 58217731 -223975933 + MIR SINE MIR 20 111 -151 1987 136 3 20 chr1 58218241 58218400 -223975264 - AluJb SINE Alu -22 290 137 2117 128 0 23 chr1 58218400 58218705 -223974959 - AluSx SINE Alu -14 298 1 1987 136 3 20 chr1 58218705 58218840 -223974824 - AluJb SINE Alu -175 137 1 1781 174 16 0 chr1 58219087 58219404 -223974260 + L1MC1 LINE L1 6006 6327 -6 757 185 33 7 chr1 58219612 58219763 -223973901 + AluJo SINE Alu 3 157 -155 1961 127 3 14 chr1 58220493 58220797 -223972867 + AluSx SINE Alu 1 301 0 307 344 31 46 chr1 58221216 58221411 -223972253 + MIR SINE MIR 15 206 -56 514 123 0 0 chr1 58221424 58221497 -223972167 - AluSc SINE Alu -87 222 150 391 305 81 29 chr1 58221653 58221827 -223971837 - MIR SINE MIR -71 191 9 351 0 0 0 chr1 58222204 58222243 -223971421 + (TTG)n Simple_repeat Simple_repeat 2 40 0 506 261 124 17 chr1 58222256 58222497 -223971167 - MLT1L LTR MaLR -348 267 1 22 56 0 0 chr1 58222576 58222612 -223971052 + AT_rich Low_complexity Low_complexity 1 36 0 202 287 87 87 chr1 58222844 58222994 -223970670 - MIR SINE MIR -66 196 47 27 0 0 0 chr1 58223127 58223154 -223970510 + AT_rich Low_complexity Low_complexity 1 27 0 226 231 39 0 chr1 58223186 58223264 -223970400 - L1M4 LINE L1 -801 5345 5265 2077 131 0 0 chr1 58223866 58224173 -223969491 - AluSx SINE Alu 0 307 1 186 150 0 0 chr1 58225006 58225046 -223968618 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 253 296 174 0 chr1 58225518 58225616 -223968048 - L2 LINE L2 -9 3263 3149 22 0 0 0 chr1 58225632 58225654 -223968010 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 58225886 58225907 -223967757 + AT_rich Low_complexity Low_complexity 1 21 0 1662 178 17 27 chr1 58226133 58226431 -223967233 + AluJo SINE Alu 1 295 -17 1569 245 80 29 chr1 58226432 58227272 -223966392 + L1MEc LINE L1 2093 2946 -3269 489 243 21 74 chr1 58227281 58227470 -223966194 + L1ME2 LINE L1 5949 6127 -37 * 4092 113 22 51 chr1 58227464 58228058 -223965606 + L1PB1 LINE L1 4788 5361 -790 2488 63 0 3 chr1 58228058 58228360 -223965304 + AluY SINE Alu 1 301 -10 4092 113 22 51 chr1 58228360 58228891 -223964773 + L1PB1 LINE L1 5361 5905 -246 1185 84 7 0 chr1 58228891 58229034 -223964630 + AluSg/x SINE Alu 143 289 -20 1425 82 0 10 chr1 58229034 58229229 -223964435 + L1PB1 LINE L1 5959 6151 0 1185 84 7 0 chr1 58229229 58229240 -223964424 + AluSg/x SINE Alu 289 298 -11 908 279 249 27 chr1 58229727 58230398 -223963266 - L2 LINE L2 -424 2890 2071 227 305 34 0 chr1 58230604 58230663 -223963001 - L2 LINE L2 -76 3196 3136 892 133 18 12 chr1 58231257 58231423 -223962241 + MER2 DNA MER2_type 44 210 -135 1783 151 19 44 chr1 58231429 58231748 -223961916 - AluJo SINE Alu -1 311 1 186 333 90 13 chr1 58233762 58233840 -223959824 + L2 LINE L2 3181 3264 -49 290 143 161 0 chr1 58234404 58234460 -223959204 + MIR SINE MIR 194 258 -4 370 286 93 29 chr1 58234961 58235101 -223958563 + MIR SINE MIR 1 149 -113 379 286 36 18 chr1 58235271 58235383 -223958281 - MIR SINE MIR -79 129 16 288 170 0 0 chr1 58236418 58236471 -223957193 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chr1 58237101 58237121 -223956543 + (TCTA)n Simple_repeat Simple_repeat 3 22 0 21 36 0 0 chr1 58237124 58237152 -223956512 + AT_rich Low_complexity Low_complexity 1 28 0 267 299 126 11 chr1 58240824 58240911 -223952753 + L2 LINE L2 3127 3223 -49 223 289 0 72 chr1 58243519 58243602 -223950062 + MIR3 SINE MIR 104 180 -28 1645 184 7 7 chr1 58244165 58244443 -223949221 - AluJo SINE Alu -34 278 1 2080 132 0 3 chr1 58244507 58244802 -223948862 - AluSx SINE Alu -18 294 1 968 156 28 113 chr1 58244813 58244854 -223948810 - L1MB2 LINE L1 -3 6168 6125 2332 71 0 10 chr1 58244854 58245148 -223948516 - AluSc SINE Alu -18 291 1 968 156 28 113 chr1 58245148 58245181 -223948483 - L1MB2 LINE L1 -46 6125 6091 2244 92 0 3 chr1 58245181 58245473 -223948191 + AluY SINE Alu 1 291 -20 968 156 28 113 chr1 58245473 58245680 -223947984 - L1MB2 LINE L1 -80 6091 5910 236 26 0 53 chr1 58245826 58245864 -223947800 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1843 195 3 0 chr1 58246030 58246332 -223947332 - AluJo SINE Alu -9 303 1 264 244 128 58 chr1 58247146 58247318 -223946346 + MIR SINE MIR 79 262 0 23 33 0 0 chr1 58247370 58247400 -223946264 + AT_rich Low_complexity Low_complexity 1 30 0 1532 64 5 10 chr1 58247461 58247665 -223945999 - L1PA6 LINE L1 -3 6151 5949 252 338 26 13 chr1 58247929 58248006 -223945658 + MER91B DNA MER1_type 113 190 0 1919 178 7 0 chr1 58248231 58248535 -223945129 - AluJo SINE Alu -6 306 1 1297 184 12 16 chr1 58249122 58249366 -223944298 - AluJo SINE Alu -30 282 40 571 219 113 13 chr1 58249570 58249721 -223943943 - FRAM SINE Alu -11 165 1 225 275 141 20 chr1 58249834 58249983 -223943681 - L1P LINE L1 -1902 4244 4078 430 306 179 19 chr1 58249997 58250049 -223943615 - L1M4 LINE L1 -2091 4055 4013 2396 73 0 3 chr1 58250049 58250349 -223943315 - AluY SINE Alu -12 299 1 430 306 179 19 chr1 58250349 58250617 -223943047 - L1M4 LINE L1 -2133 4013 3668 192 77 0 0 chr1 58250617 58250643 -223943021 + (CATA)n Simple_repeat Simple_repeat 2 27 0 430 306 179 19 chr1 58250643 58250684 -223942980 - L1M4 LINE L1 -2478 3668 3635 217 226 32 65 chr1 58250712 58250774 -223942890 + MER5A DNA MER1_type 130 189 0 2186 124 3 0 chr1 58251456 58251755 -223941909 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 58253895 58253917 -223939747 + AT_rich Low_complexity Low_complexity 1 22 0 671 134 9 0 chr1 58254907 58255042 -223938622 + L1M2 LINE L1 1 502 -6707 1839 163 3 3 chr1 58255692 58255975 -223937689 + AluJo SINE Alu 6 288 -24 2155 110 3 16 chr1 58256059 58256368 -223937296 - AluSp SINE Alu -8 305 1 2691 176 31 0 chr1 58256397 58256920 -223936744 - L1MB5 LINE L1 -7 6167 5629 515 219 77 61 chr1 58256993 58257240 -223936424 + MER112 DNA MER1_type 3 253 -3 441 387 6 0 chr1 58257314 58257482 -223936182 + MIR SINE MIR 21 189 -73 476 187 187 66 chr1 58257810 58257877 -223935787 + MER5A DNA MER1_type 3 61 -128 2110 128 3 28 chr1 58257877 58258198 -223935466 + AluSq SINE Alu 1 313 0 476 187 187 66 chr1 58258198 58258296 -223935368 + MER5A DNA MER1_type 61 188 -1 227 86 0 0 chr1 58258836 58258871 -223934793 - L1MA9 LINE L1 0 6312 6278 395 306 50 73 chr1 58258941 58259202 -223934462 - MIR SINE MIR 0 262 8 889 189 24 29 chr1 58259524 58259730 -223933934 - MER20 DNA MER1_type -5 214 10 28 48 0 0 chr1 58259854 58259896 -223933768 + AT_rich Low_complexity Low_complexity 1 42 0 1644 179 54 0 chr1 58260523 58260803 -223932861 + AluJb SINE Alu 1 295 -17 1215 135 0 0 chr1 58261078 58261248 -223932416 + AluSg/x SINE Alu 137 306 -6 712 172 22 22 chr1 58261262 58261396 -223932268 + AluJo SINE Alu 3 136 -176 33 0 0 0 chr1 58261433 58261466 -223932198 + AT_rich Low_complexity Low_complexity 1 33 0 361 276 6 105 chr1 58261560 58261741 -223931923 - MIR3 SINE MIR -12 196 34 428 162 14 0 chr1 58261784 58261858 -223931806 - AluJ/FLAM SINE Alu -237 75 1 1168 119 0 0 chr1 58262396 58262572 -223931092 + L1PA13 LINE L1 5984 6159 -4 949 75 15 15 chr1 58263451 58263584 -223930080 - FLAM_C SINE Alu 0 133 1 291 320 13 0 chr1 58265065 58265140 -223928524 + MIR SINE MIR 35 110 -98 478 153 0 0 chr1 58265494 58265566 -223928098 + AluJ/FLAM SINE Alu 1 72 -240 1335 137 0 19 chr1 58265817 58266022 -223927642 - AluSg/x SINE Alu -26 286 86 482 275 21 93 chr1 58266665 58266858 -223926806 + MIR3 SINE MIR 19 197 -11 249 226 0 36 chr1 58267174 58267258 -223926406 + L1ME4a LINE L1 5863 5943 -178 2129 121 14 0 chr1 58267282 58267579 -223926085 + AluSx SINE Alu 1 301 -11 188 324 143 0 chr1 58268494 58268599 -223925065 - L2 LINE L2 -10 3303 3184 260 278 58 116 chr1 58269572 58269745 -223923919 + MIR3 SINE MIR 43 205 -3 182 36 0 36 chr1 58270304 58270332 -223923332 + (TA)n Simple_repeat Simple_repeat 1 27 0 849 174 6 29 chr1 58270646 58270818 -223922846 + FRAM SINE Alu 1 159 -17 22 0 0 0 chr1 58272354 58272376 -223921288 + AT_rich Low_complexity Low_complexity 1 22 0 2406 86 0 3 chr1 58272382 58272686 -223920978 - AluSg SINE Alu -7 303 1 668 306 21 32 chr1 58272986 58273100 -223920564 + MIR SINE MIR 11 125 -137 778 148 26 0 chr1 58273100 58273215 -223920449 - FLAM_C SINE Alu -15 118 1 668 306 21 32 chr1 58273215 58273354 -223920310 + MIR SINE MIR 125 262 0 238 325 81 44 chr1 58273771 58273931 -223919733 + MIR3 SINE MIR 31 196 -12 198 293 24 106 chr1 58274035 58274093 -223919571 + MIR SINE MIR 3 47 -215 2092 154 11 16 chr1 58274093 58274457 -223919207 + MLT1A1 LTR MaLR 2 363 -2 198 293 24 106 chr1 58274457 58274521 -223919143 + MIR SINE MIR 47 115 -147 266 135 39 0 chr1 58274529 58274581 -223919083 + MLT1D LTR MaLR 417 470 -35 22 56 0 0 chr1 58274857 58274893 -223918771 + AT_rich Low_complexity Low_complexity 1 36 0 483 106 0 0 chr1 58274894 58274960 -223918704 + Alu SINE Alu 1 66 -244 197 286 126 34 chr1 58275251 58275370 -223918294 - L2 LINE L2 -1 3312 3183 309 188 188 78 chr1 58276300 58276428 -223917236 - L1ME3A LINE L1 -2 6168 6027 897 205 112 43 chr1 58276530 58276969 -223916695 - MER106B DNA MER1_type 0 1059 591 1186 209 0 5 chr1 58276981 58277196 -223916468 - AluJo SINE Alu -12 300 87 676 132 118 0 chr1 58277205 58277357 -223916307 - MER106B DNA MER1_type -484 575 406 1372 163 76 12 chr1 58277357 58277608 -223916056 - AluJb SINE Alu -45 267 1 991 297 63 79 chr1 58277785 58278219 -223915445 - L1MEd LINE L1 -4862 1257 839 2325 105 0 0 chr1 58278219 58278525 -223915139 - AluSg SINE Alu -4 306 1 991 297 63 79 chr1 58278525 58278840 -223914824 - L1MEd LINE L1 -5280 839 520 2198 117 0 0 chr1 58279835 58280126 -223913538 - AluSx SINE Alu -6 306 16 497 114 25 0 chr1 58280128 58280207 -223913457 + AluS SINE Alu 220 300 -11 2082 131 0 0 chr1 58280293 58280609 -223913055 - AluSx SINE Alu 0 316 1 222 296 185 9 chr1 58280710 58280818 -223912846 - L2 LINE L2 0 3313 3187 546 236 94 71 chr1 58280961 58281228 -223912436 + L1ME4a LINE L1 5556 5828 -293 325 297 81 0 chr1 58281311 58281422 -223912242 + L1ME4a LINE L1 5966 6085 -36 1159 172 100 29 chr1 58281441 58281720 -223911944 + AluJo SINE Alu 1 299 -3 22 0 0 0 chr1 58281745 58281767 -223911897 + AT_rich Low_complexity Low_complexity 1 22 0 853 145 0 43 chr1 58281875 58282013 -223911651 - FRAM SINE Alu -22 154 23 305 217 225 14 chr1 58282478 58282536 -223911128 + L1ME4a LINE L1 5955 6000 -121 2061 104 3 57 chr1 58282536 58282852 -223910812 - AluSx SINE Alu -13 299 1 305 217 225 14 chr1 58282852 58282931 -223910733 + L1ME4a LINE L1 6000 6121 0 33 25 0 0 chr1 58283226 58283266 -223910398 + AT_rich Low_complexity Low_complexity 1 40 0 2164 99 3 0 chr1 58283290 58283597 -223910067 - AluSx SINE Alu 0 308 1 2278 125 7 0 chr1 58283697 58284002 -223909662 - AluSx SINE Alu -3 309 3 392 167 33 22 chr1 58284006 58284096 -223909568 + MER74A LTR ERVL 22 112 -446 362 176 0 0 chr1 58284088 58284156 -223909508 + MER74A LTR ERVL 489 556 -2 * 857 98 8 30 chr1 58285211 58285344 -223908320 - FLAM_C SINE Alu 0 133 4 342 329 134 0 chr1 58286850 58286999 -223906665 - MIR3 SINE MIR -21 187 19 1641 167 0 18 chr1 58287413 58287688 -223905976 - AluJb SINE Alu 0 312 43 291 231 93 9 chr1 58288231 58288339 -223905325 + L1ME4a LINE L1 6004 6120 -1 312 229 0 0 chr1 58288546 58288629 -223905035 + (CAT)n Simple_repeat Simple_repeat 3 85 0 207 170 0 0 chr1 58288645 58288692 -223904972 + CT-rich Low_complexity Low_complexity 1 47 0 587 204 46 0 chr1 58289376 58289484 -223904180 - FLAM_A SINE Alu -20 122 10 1979 169 3 0 chr1 58289571 58289873 -223903791 - AluJb SINE Alu -9 303 1 312 353 147 0 chr1 58289893 58290043 -223903621 - L2 LINE L2 0 3272 3101 1341 161 12 16 chr1 58290223 58290465 -223903199 + AluJb SINE Alu 67 307 -5 384 218 76 76 chr1 58290748 58290973 -223902691 + L1ME3A LINE L1 5727 5951 -219 1839 166 17 10 chr1 58291050 58291351 -223902313 + AluJb SINE Alu 1 303 -9 2358 114 103 65 chr1 58291428 58291970 -223901694 + MER34B LTR ERV1 14 565 0 288 326 142 7 chr1 58292241 58292382 -223901282 + L2 LINE L2 2500 2659 -655 1125 172 18 74 chr1 58292479 58292764 -223900900 + MLT1B LTR MaLR 1 269 -121 1659 73 13 30 chr1 58292770 58293003 -223900661 + AluSc SINE Alu 45 273 -36 2068 131 0 7 chr1 58293156 58293453 -223900211 - AluSx SINE Alu -17 295 1 6625 136 172 25 chr1 58293492 58294971 -223898693 - pTR5 LTR ERV1 0 2438 743 434 258 55 92 chr1 58295136 58295237 -223898427 + L1M4 LINE L1 4083 4186 -1960 2245 66 0 21 chr1 58295237 58295544 -223898120 + AluY SINE Alu 5 305 0 434 258 55 92 chr1 58295544 58295712 -223897952 + L1M4 LINE L1 4186 4343 -1803 522 269 140 6 chr1 58295810 58295981 -223897683 - MIR SINE MIR -57 205 12 542 227 31 73 chr1 58296021 58296144 -223897520 + L1M4 LINE L1 4490 4617 -1529 2162 74 0 86 chr1 58296144 58296480 -223897184 + AluY SINE Alu 1 307 -4 542 227 31 73 chr1 58296480 58296574 -223897090 + L1M4 LINE L1 4617 4697 -1449 2466 77 0 0 chr1 58296574 58296884 -223896780 + AluY SINE Alu 1 310 -1 542 227 31 73 chr1 58296884 58296925 -223896739 + L1M4 LINE L1 4697 4738 -1408 1957 132 7 0 chr1 58296936 58297247 -223896417 + AluSx SINE Alu 1 313 0 1691 151 47 6 chr1 58297478 58297795 -223895869 + LTR39 LTR ERV1 1 330 -453 1034 188 0 30 chr1 58297796 58297998 -223895666 + LTR39 LTR ERV1 581 776 -7 21 36 0 0 chr1 58298583 58298611 -223895053 + AT_rich Low_complexity Low_complexity 1 28 0 1188 171 192 36 chr1 58298660 58299045 -223894619 + LTR49-int LTR ERV1 946 1390 -4941 1245 173 75 14 chr1 58299183 58299461 -223894203 + LTR49-int LTR ERV1 1372 1666 -4665 286 233 12 35 chr1 58299462 58299634 -223894030 + (TA)n Simple_repeat Simple_repeat 1 168 0 44 80 0 0 chr1 58299937 58300037 -223893627 + AT_rich Low_complexity Low_complexity 1 100 0 2110 94 28 7 chr1 58300361 58300642 -223893022 + AluSg SINE Alu 1 290 -20 194 0 39 0 chr1 58300642 58300668 -223892996 + (TA)n Simple_repeat Simple_repeat 2 28 0 2257 110 0 0 chr1 58301509 58301809 -223891855 + AluSg SINE Alu 1 300 -10 695 115 66 0 chr1 58301939 58302061 -223891603 + LTR39 LTR ERV1 47 176 -607 889 137 0 0 chr1 58302063 58302194 -223891470 + FLAM_C SINE Alu 1 131 -12 3457 157 11 8 chr1 58302194 58302807 -223890857 + LTR39 LTR ERV1 169 783 0 1276 153 0 14 chr1 58303094 58303303 -223890361 + AluSg/x SINE Alu 86 291 -21 364 304 103 52 chr1 58303355 58303606 -223890058 + L1ME LINE L1 5377 5647 -474 2547 161 82 14 chr1 58303614 58304128 -223889536 - MER21A LTR ERV1 -6 925 377 1328 136 19 27 chr1 58304134 58304391 -223889273 - MER21A LTR ERV1 -667 264 10 559 111 10 10 chr1 58304414 58304513 -223889151 - MER21A LTR ERV1 -823 108 10 2314 156 10 3 chr1 58304514 58304904 -223888760 + MER57A LTR ERV1 1 393 -10 2923 193 64 34 chr1 58304918 58305619 -223888045 + MER57A-int LTR ERV1 44 771 -6766 1578 201 36 7 chr1 58305619 58305922 -223887742 + AluJo SINE Alu 1 312 0 2923 193 64 34 chr1 58305922 58305986 -223887678 + MER57A-int LTR ERV1 771 832 -6705 323 218 90 53 chr1 58306109 58306242 -223887422 + MER57A-int LTR ERV1 851 988 -4135 475 145 0 0 chr1 58306242 58306318 -223887346 + MER34C LTR ERV1 155 230 -355 517 198 28 106 chr1 58306354 58306692 -223886972 + MER57A-int LTR ERV1 1109 1980 -3729 360 209 4 196 chr1 58306797 58307022 -223886642 + LTR49-int LTR ERV1 3275 3456 -2875 2231 123 0 0 chr1 58308138 58308439 -223885225 - AluSx SINE Alu -11 301 1 272 71 0 0 chr1 58308455 58308497 -223885167 - Alu SINE Alu -1 301 260 1990 141 10 3 chr1 58308514 58308687 -223884977 - AluSx SINE Alu -6 306 129 180 0 0 0 chr1 58308687 58308707 -223884957 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1990 141 10 3 chr1 58308707 58308837 -223884827 - AluSx SINE Alu -183 129 1 2638 154 9 39 chr1 58308838 58309403 -223884261 - MER57-int LTR ERV1 -1742 5795 5248 884 187 0 0 chr1 58309474 58309629 -223884035 + FRAM SINE Alu 11 165 -11 1663 184 3 14 chr1 58309631 58309924 -223883740 + AluJo SINE Alu 1 290 -22 2095 128 20 0 chr1 58309924 58310230 -223883434 + AluSx SINE Alu 1 312 0 342 200 0 0 chr1 58310233 58310313 -223883351 + Cheshire DNA MER1_type 621 700 -1720 2074 155 0 0 chr1 58310313 58310609 -223883055 + AluSx SINE Alu 1 296 -16 2906 164 119 55 chr1 58310609 58311033 -223882631 + Cheshire DNA MER1_type 1554 1950 -470 2190 125 22 8 chr1 58311033 58311394 -223882270 - MER47A DNA MER2_type 0 366 1 2906 164 119 55 chr1 58311394 58311784 -223881880 + Cheshire DNA MER1_type 1950 2420 0 23 79 0 13 chr1 58311828 58311864 -223881800 + AT_rich Low_complexity Low_complexity 1 36 -39 2112 132 7 0 chr1 58311864 58312160 -223881504 + AluSx SINE Alu 2 299 -13 23 79 0 13 chr1 58312160 58312199 -223881465 + AT_rich Low_complexity Low_complexity 36 75 0 312 241 23 30 chr1 58312272 58312405 -223881259 + L1MC/D LINE L1 5198 5329 -817 2028 119 13 13 chr1 58312483 58312795 -223880869 - AluSx SINE Alu 0 312 1 1871 128 13 40 chr1 58312915 58313219 -223880445 + AluSc SINE Alu 1 296 -13 1037 152 61 0 chr1 58313225 58313390 -223880274 + FRAM SINE Alu 1 168 -8 284 303 46 69 chr1 58313417 58313699 -223879965 + L1MC/D LINE L1 5502 5801 -369 455 264 80 71 chr1 58313700 58313939 -223879725 + L1ME3A LINE L1 5728 5968 -202 203 139 23 23 chr1 58314093 58314136 -223879528 + (TA)n Simple_repeat Simple_repeat 2 44 0 750 216 0 20 chr1 58314140 58314288 -223879376 - FRAM SINE Alu -31 145 1 536 237 144 26 chr1 58314421 58314615 -223879049 - L2 LINE L2 -43 3270 3054 * 1735 272 117 34 chr1 58314603 58315280 -223878384 - L2 LINE L2 -1092 2222 1490 1509 179 38 28 chr1 58315736 58316026 -223877638 + AluJb SINE Alu 1 293 -19 949 468 14 10 chr1 58316090 58316383 -223877281 - AluJo SINE Alu -8 294 1 300 230 86 52 chr1 58316669 58316843 -223876821 - L1MC4a LINE L1 -1928 5880 5701 211 128 128 0 chr1 58316881 58316920 -223876744 - MIR SINE MIR 0 262 219 779 165 0 24 chr1 58317056 58317183 -223876481 - FLAM_A SINE Alu -9 124 1 241 264 253 0 chr1 58317269 58317356 -223876308 - L2 LINE L2 0 3313 3205 208 271 130 72 chr1 58317990 58318171 -223875493 + L2 LINE L2 1622 1791 -1523 2052 131 0 0 chr1 58318171 58318454 -223875210 + AluSx SINE Alu 1 283 -29 208 271 130 72 chr1 58318454 58318648 -223875016 + L2 LINE L2 1791 2019 -1295 279 0 0 0 chr1 58318652 58318683 -223874981 + (A)n Simple_repeat Simple_repeat 1 31 0 2179 101 10 3 chr1 58318964 58319272 -223874392 - AluSx SINE Alu -2 310 1 438 164 0 0 chr1 58319321 58319388 -223874276 - AluJ/FLAM SINE Alu -245 67 1 189 74 0 0 chr1 58319427 58319454 -223874210 + (CA)n Simple_repeat Simple_repeat 2 28 0 1659 167 23 7 chr1 58319526 58319831 -223873833 + AluJb SINE Alu 1 310 -2 2121 123 0 0 chr1 58320581 58320900 -223872764 - AluSx SINE Alu 0 319 1 789 134 0 70 chr1 58321000 58321157 -223872507 + AluSq/x SINE Alu 5 150 -163 313 149 0 149 chr1 58321162 58321249 -223872415 + AluJ/FRAM SINE Alu 229 302 0 1869 150 26 13 chr1 58321420 58321726 -223871938 + AluJb SINE Alu 1 310 -2 202 288 68 14 chr1 58322416 58322489 -223871175 - MIR3 SINE MIR -49 159 83 1880 126 28 0 chr1 58322649 58322934 -223870730 - AluJb SINE Alu -11 301 9 207 219 47 16 chr1 58322943 58323007 -223870657 + L2 LINE L2 3156 3221 -92 221 302 19 0 chr1 58323090 58323143 -223870521 + L2 LINE L2 3256 3309 -4 287 267 0 23 chr1 58323153 58323239 -223870425 + MIR SINE MIR 178 261 -1 2103 122 42 20 chr1 58323356 58323709 -223869955 - MER46B DNA MER2_type 0 236 1 2242 75 10 3 chr1 58323997 58324290 -223869374 + AluSc SINE Alu 1 295 -14 349 340 13 13 chr1 58324292 58324445 -223869219 + MIR3 SINE MIR 16 168 -40 748 164 0 0 chr1 58324467 58324583 -223869081 + FLAM_C SINE Alu 2 117 -26 183 80 0 0 chr1 58324590 58324615 -223869049 + (CA)n Simple_repeat Simple_repeat 2 26 0 217 333 39 0 chr1 58324644 58324722 -223868942 + L3 LINE CR1 1430 1510 -67 285 331 30 8 chr1 58324956 58325089 -223868575 - L3 LINE CR1 -309 1268 1133 220 248 10 139 chr1 58326789 58326837 -223866827 - L2 LINE L2 -51 3262 3232 1765 142 7 39 chr1 58326837 58327146 -223866518 + AluJb SINE Alu 1 299 -13 220 248 10 139 chr1 58327146 58327198 -223866466 - L2 LINE L2 -81 3232 3175 797 155 155 31 chr1 58327201 58327395 -223866269 - LTR64 LTR ERVK 0 558 341 1248 236 14 0 chr1 58327402 58327677 -223865987 + AluJo SINE Alu 21 299 -13 1396 165 45 72 chr1 58327679 58328012 -223865652 - LTR64 LTR ERVK -234 324 1 671 187 8 30 chr1 58328259 58328393 -223865271 - FLAM_C SINE Alu -1 132 2 1761 169 11 4 chr1 58328461 58328740 -223864924 + AluJb SINE Alu 21 301 -11 331 271 149 50 chr1 58328986 58329207 -223864457 - L2 LINE L2 0 3272 3030 2018 114 7 46 chr1 58329213 58329519 -223864145 + AluSg SINE Alu 1 294 -16 338 294 11 0 chr1 58329712 58329804 -223863860 + L2 LINE L2 3220 3312 -1 * 1130 285 99 41 chr1 58329802 58330455 -223863209 - L2 LINE L2 -583 2731 2041 1422 136 0 0 chr1 58330538 58330736 -223862928 + AluSx SINE Alu 1 198 -114 201 39 0 0 chr1 58331004 58331030 -223862634 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1804 153 0 24 chr1 58331034 58331328 -223862336 - AluJb SINE Alu -24 288 2 530 191 11 0 chr1 58331349 58331443 -223862221 + AluSx SINE Alu 199 293 -16 1758 178 20 3 chr1 58331533 58331826 -223861838 - AluJo SINE Alu -14 298 1 25 0 0 0 chr1 58331843 58331868 -223861796 + AT_rich Low_complexity Low_complexity 1 25 0 2347 96 0 7 chr1 58332133 58332434 -223861230 - AluSx SINE Alu -13 299 1 21 57 0 0 chr1 58332444 58332479 -223861185 + AT_rich Low_complexity Low_complexity 1 35 0 2225 121 0 0 chr1 58333057 58333354 -223860310 + AluSx SINE Alu 1 297 -15 748 282 111 58 chr1 58333562 58333916 -223859748 + L2 LINE L2 2709 3043 -270 1696 154 52 0 chr1 58333916 58334041 -223859623 + AluJb SINE Alu 1 118 -194 279 0 0 0 chr1 58334041 58334072 -223859592 + (CA)n Simple_repeat Simple_repeat 2 32 0 1696 154 52 0 chr1 58334072 58334218 -223859446 + AluJb SINE Alu 118 286 -26 748 282 111 58 chr1 58334218 58334281 -223859383 + L2 LINE L2 3043 3101 -212 2287 92 3 0 chr1 58334281 58334576 -223859088 + AluSg SINE Alu 1 296 -14 748 282 111 58 chr1 58334576 58334724 -223858940 + L2 LINE L2 3101 3313 0 225 0 0 0 chr1 58334943 58334968 -223858696 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 463 282 75 6 chr1 58335307 58335481 -223858183 - MIR SINE MIR -57 205 20 756 156 8 8 chr1 58335603 58335725 -223857939 - AluJb SINE Alu -189 123 2 1325 182 92 33 chr1 58336071 58336270 -223857394 + L1MD3 LINE L1 6460 6646 -1349 2298 111 0 0 chr1 58336270 58336568 -223857096 + AluSx SINE Alu 1 298 -14 1325 182 92 33 chr1 58336568 58337743 -223855921 + L1MD3 LINE L1 6646 7983 -12 200 277 0 0 chr1 58338279 58338326 -223855338 - L2 LINE L2 -6 3307 3261 2258 110 0 3 chr1 58338359 58338669 -223854995 + AluSg1 SINE Alu 1 309 0 2201 192 43 22 chr1 58338759 58339057 -223854607 - MLT1D LTR MaLR 0 505 192 2245 100 10 0 chr1 58339057 58339356 -223854308 - AluY SINE Alu -9 302 1 2201 192 43 22 chr1 58339356 58339547 -223854117 - MLT1D LTR MaLR -313 192 6 487 241 34 21 chr1 58339740 58339898 -223853766 - MIR SINE MIR -45 163 1 8734 88 7 0 chr1 58339998 58341985 -223851679 + L1PA8 LINE L1 4171 6170 -2 1335 177 0 0 chr1 58342790 58343005 -223850659 - AluJb SINE Alu -93 219 5 370 250 118 0 chr1 58343227 58343371 -223850293 + MIR SINE MIR 47 207 -55 435 229 130 52 chr1 58343465 58343657 -223850007 + MIR SINE MIR 48 254 -8 243 0 0 0 chr1 58343897 58343924 -223849740 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1435 164 0 101 chr1 58343983 58344319 -223849345 - AluJo SINE Alu 0 302 1 1168 108 0 6 chr1 58344878 58345035 -223848629 + AluSc SINE Alu 135 290 -19 219 362 88 22 chr1 58345150 58345468 -223848196 - L2 LINE L2 -337 2977 2639 1224 248 73 57 chr1 58345468 58345502 -223848162 + LTR33 LTR ERVL 1 33 -488 3734 116 42 14 chr1 58345502 58346090 -223847574 - MER6A DNA MER2_type 0 605 1 1224 248 73 57 chr1 58346090 58346560 -223847104 + LTR33 LTR ERVL 33 513 -8 863 224 92 40 chr1 58346592 58346820 -223846844 - MIR SINE MIR -21 241 2 2341 85 20 0 chr1 58346854 58347147 -223846517 + AluY SINE Alu 1 299 -12 2182 102 3 7 chr1 58347264 58347557 -223846107 - AluSx SINE Alu -15 297 6 277 148 0 19 chr1 58347561 58347615 -223846049 - AluSq SINE Alu 0 300 248 1445 77 0 51 chr1 58347619 58347815 -223845849 - AluSq SINE Alu -125 188 3 245 95 24 0 chr1 58348091 58348133 -223845531 + L2 LINE L2 3271 3313 0 483 77 0 0 chr1 58348164 58348229 -223845435 + AluSc SINE Alu 236 300 -9 2309 103 0 0 chr1 58348240 58348530 -223845134 + AluSx SINE Alu 1 290 -22 646 236 81 6 chr1 58348617 58348778 -223844886 + MLT1A1 LTR MaLR 185 357 -8 198 0 0 0 chr1 58348993 58349015 -223844649 + (CA)n Simple_repeat Simple_repeat 2 23 0 1439 187 36 59 chr1 58349260 58349565 -223844099 + AluJo SINE Alu 1 298 -4 239 328 42 0 chr1 58349904 58350023 -223843641 - L2 LINE L2 -5 3308 3185 671 209 104 80 chr1 58350559 58350808 -223842856 + MIR SINE MIR 3 257 -5 307 226 83 45 chr1 58350804 58350937 -223842727 - MIR SINE MIR -35 227 90 * 236 217 389 0 chr1 58350940 58351059 -223842605 - L2 LINE L2 -61 3252 3180 2263 110 0 13 chr1 58351059 58351367 -223842297 + AluSx SINE Alu 1 304 -8 236 217 389 0 chr1 58351367 58351422 -223842242 - L2 LINE L2 -133 3180 3010 209 33 33 0 chr1 58351787 58351817 -223841847 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2057 205 21 26 chr1 58352088 58352556 -223841108 - MLT1C LTR MaLR 0 467 2 397 355 54 0 chr1 58352634 58352800 -223840864 - MER91A DNA MER1_type -20 176 2 201 39 0 0 chr1 58352990 58353016 -223840648 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 703 273 94 53 chr1 58353017 58353495 -223840169 + MLT1K LTR MaLR 50 583 -5 569 113 38 38 chr1 58353517 58353676 -223839988 + GA-rich Low_complexity Low_complexity 3 161 0 2406 82 0 19 chr1 58353948 58354263 -223839401 - AluY SINE Alu -2 309 1 269 26 26 0 chr1 58354861 58354899 -223838765 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1050 176 0 26 chr1 58354905 58355098 -223838566 - AluJb SINE Alu -18 294 107 254 268 14 0 chr1 58355191 58355262 -223838402 + MIR SINE MIR 191 262 0 1711 152 36 11 chr1 58355697 58355974 -223837690 - AluJb SINE Alu -28 284 1 2125 164 99 42 chr1 58356666 58357142 -223836522 - MLT1D LTR MaLR -2 503 1 2049 137 26 7 chr1 58357170 58357476 -223836188 + AluJb SINE Alu 1 312 0 24 0 0 0 chr1 58357655 58357679 -223835985 + AT_rich Low_complexity Low_complexity 1 24 0 2176 123 0 0 chr1 58357679 58357972 -223835692 - AluSq SINE Alu -20 293 1 202 283 0 0 chr1 58358576 58358629 -223835035 - L2 LINE L2 0 3313 3261 327 340 14 14 chr1 58358699 58358846 -223834818 - L2 LINE L2 -194 3078 2932 1332 172 27 15 chr1 58359034 58359296 -223834368 - L1MD3 LINE L1 -2 7993 7729 519 133 28 126 chr1 58359293 58359342 -223834322 - L1MB7 LINE L1 -7 6177 6125 * 2280 90 0 0 chr1 58359342 58359631 -223834033 - AluSg SINE Alu -16 294 6 519 133 28 126 chr1 58359631 58359724 -223833940 - L1MB7 LINE L1 -59 6125 6049 2003 126 51 3 chr1 58359757 58360050 -223833614 - AluSx SINE Alu -5 307 1 6930 229 116 33 chr1 58360102 58362527 -223831137 - L2 LINE L2 -632 2682 56 840 215 31 5 chr1 58362740 58362931 -223830733 - MIR SINE MIR -34 228 33 2130 125 7 3 chr1 58362932 58363235 -223830429 + AluSx SINE Alu 3 306 -6 377 231 25 33 chr1 58363419 58363540 -223830124 - MIR SINE MIR -126 136 17 183 227 0 0 chr1 58363745 58363789 -223829875 - MER5B DNA MER1_type -132 46 3 495 266 7 0 chr1 58363950 58364093 -223829571 + MIR SINE MIR 105 248 -14 1498 181 31 12 chr1 58365092 58365418 -223828246 - L1MC3 LINE L1 -1 7994 7485 475 335 68 42 chr1 58365449 58365462 -223828202 + L2 LINE L2 2950 2961 -311 1741 179 26 0 chr1 58365462 58365764 -223827900 - AluJb SINE Alu -2 310 1 475 335 68 42 chr1 58365764 58366060 -223827604 + L2 LINE L2 2961 3267 -5 2597 52 3 3 chr1 58366254 58366560 -223827104 - AluSp SINE Alu -7 306 1 243 136 113 0 chr1 58366630 58366715 -223826949 - MIR SINE MIR -58 204 103 403 308 77 30 chr1 58367388 58367557 -223826107 - MIR SINE MIR -66 196 20 379 290 136 0 chr1 58368033 58368195 -223825469 + MIR SINE MIR 3 186 -76 187 351 28 33 chr1 58368281 58368492 -223825172 - L2 LINE L2 -237 3035 2826 511 222 200 17 chr1 58368548 58368728 -223824936 + MIR SINE MIR 50 262 0 404 265 53 13 chr1 58368769 58368920 -223824744 - MIR3 SINE MIR -21 187 31 2106 120 0 27 chr1 58369302 58369602 -223824062 + AluSx SINE Alu 1 292 -20 475 170 13 0 chr1 58370145 58370248 -223823416 - HsTC2 DNA Tc2 0 1898 1 324 183 161 58 chr1 58370330 58370467 -223823197 - L1MC5 LINE L1 -34 7927 7777 275 255 174 0 chr1 58370794 58370892 -223822772 - L2 LINE L2 0 3272 3158 464 292 0 0 chr1 58370897 58371034 -223822630 - L1ME LINE L1 -360 5761 5625 306 285 84 50 chr1 58371037 58371181 -223822483 - L1ME LINE L1 -646 5518 5365 2092 137 10 0 chr1 58371181 58371480 -223822184 - AluSx SINE Alu -10 302 1 306 285 84 50 chr1 58371480 58371514 -223822150 - L1ME LINE L1 -799 5365 5334 204 163 0 0 chr1 58372344 58372387 -223821277 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 316 296 71 0 chr1 58372387 58372485 -223821179 - L2 LINE L2 0 3272 3168 185 226 129 0 chr1 58372771 58372833 -223820831 + MIR SINE MIR 104 173 -89 192 302 0 0 chr1 58372840 58372883 -223820781 + L2 LINE L2 3136 3178 -94 1598 177 42 7 chr1 58373225 58373508 -223820156 - AluJo SINE Alu -19 293 1 576 282 20 51 chr1 58373545 58373740 -223819924 + MIR3 SINE MIR 2 190 -18 1074 111 0 31 chr1 58373749 58373911 -223819753 + L1PA16 LINE L1 6010 6166 0 182 301 55 0 chr1 58374395 58374468 -223819196 + MIR SINE MIR 70 146 -116 203 340 105 33 chr1 58374583 58374736 -223818928 - L2 LINE L2 -16 3297 3134 820 195 233 26 chr1 58374737 58375112 -223818552 + LTR28 LTR ERV1 1 505 -515 463 276 7 76 chr1 58375233 58375378 -223818286 - MIR SINE MIR -25 237 103 224 301 112 68 chr1 58375796 58375921 -223817743 - MIR SINE MIR -34 228 88 1691 134 0 50 chr1 58375921 58376104 -223817560 - AluSq SINE Alu 0 313 151 2075 105 0 19 chr1 58376104 58376418 -223817246 - AluSq SINE Alu -5 308 1 1691 134 0 50 chr1 58376418 58376561 -223817103 - AluSq SINE Alu -162 151 2 224 301 112 68 chr1 58376561 58376640 -223817024 - MIR SINE MIR -174 88 14 2315 86 0 6 chr1 58376685 58376999 -223816665 - AluSx SINE Alu 0 312 1 314 138 17 0 chr1 58377020 58377078 -223816586 + CT-rich Low_complexity Low_complexity 2 60 0 2075 110 0 13 chr1 58377080 58377390 -223816274 - AluSx SINE Alu -5 307 2 1274 181 0 0 chr1 58377391 58377617 -223816047 - AluJb SINE Alu -2 310 85 2126 126 7 0 chr1 58377633 58377943 -223815721 - AluSx SINE Alu 0 312 1 307 221 189 0 chr1 58377959 58378054 -223815610 + Charlie2 DNA MER1_type 35 147 -2635 1031 181 30 10 chr1 58378054 58378253 -223815411 + L1MB3 LINE L1 5587 5789 -394 818 116 16 0 chr1 58378253 58378374 -223815290 + FLAM_C SINE Alu 1 123 -20 2470 133 25 7 chr1 58378374 58378781 -223814883 + L1MB3 LINE L1 5762 6175 -8 2203 150 6 15 chr1 58378813 58379153 -223814511 + MER1B DNA MER1_type 1 337 0 705 242 193 49 chr1 58379167 58379309 -223814355 + Charlie2 DNA MER1_type 173 293 -2569 1970 114 4 0 chr1 58379309 58379635 -223814029 + AluSx SINE Alu 1 327 0 705 242 193 49 chr1 58379635 58379859 -223813805 + Charlie2 DNA MER1_type 293 593 -2269 1773 212 40 36 chr1 58380080 58380421 -223813243 + L1ME1 LINE L1 5323 5661 -503 230 56 28 0 chr1 58380421 58380457 -223813207 + (CA)n Simple_repeat Simple_repeat 2 38 0 1773 212 40 36 chr1 58380457 58380477 -223813187 + L1ME1 LINE L1 5661 5679 -485 1400 203 43 0 chr1 58380477 58380758 -223812906 + AluJo SINE Alu 1 293 -19 1773 212 40 36 chr1 58380758 58380899 -223812765 + L1ME1 LINE L1 5679 5828 -336 2154 84 3 10 chr1 58380899 58381198 -223812466 + AluY SINE Alu 1 297 -14 1109 146 0 32 chr1 58381198 58381383 -223812281 + AluSg/x SINE Alu 134 312 0 1145 178 90 57 chr1 58381384 58381675 -223811989 + L1ME1 LINE L1 5817 6122 -44 2049 117 0 3 chr1 58381675 58381974 -223811690 - AluSx SINE Alu -14 298 1 1145 178 90 57 chr1 58381974 58382014 -223811650 + L1ME1 LINE L1 6122 6159 -7 1889 110 29 4 chr1 58382016 58382320 -223811344 - AluSc SINE Alu 0 311 1 187 327 89 30 chr1 58382321 58382489 -223811175 - L2 LINE L2 -758 2556 2379 225 94 0 0 chr1 58382515 58382547 -223811117 + (T)n Simple_repeat Simple_repeat 1 32 0 902 191 52 0 chr1 58382849 58383043 -223810621 + AluJo SINE Alu 78 281 -31 614 206 0 0 chr1 58383175 58383282 -223810382 - FLAM_C SINE Alu -36 107 1 1674 134 32 4 chr1 58383369 58383646 -223810018 + AluSx SINE Alu 1 285 -27 462 164 58 10 chr1 58383649 58383753 -223809911 + Charlie2 DNA MER1_type 1988 2096 -766 486 90 0 0 chr1 58383796 58383863 -223809801 + LTR9 LTR ERV1 1 67 -545 2428 71 0 0 chr1 58383863 58384174 -223809490 - AluY SINE Alu 0 311 1 766 99 0 0 chr1 58384174 58384275 -223809389 - AluSg/x SINE Alu -14 295 195 3421 130 42 26 chr1 58384276 58384632 -223809032 + LTR9 LTR ERV1 59 429 -183 2041 120 3 0 chr1 58384632 58384933 -223808731 + AluSx SINE Alu 1 302 -10 3421 130 42 26 chr1 58384933 58385121 -223808543 + LTR9 LTR ERV1 429 612 0 1182 179 51 4 chr1 58385121 58385356 -223808308 - AluJo SINE Alu -66 246 1 1696 132 11 28 chr1 58385443 58385761 -223807903 - AluJb SINE Alu 0 313 1 666 144 0 0 chr1 58385781 58385878 -223807786 - AluJb SINE Alu -205 107 11 597 251 73 20 chr1 58386035 58386282 -223807382 + LTR37B LTR ERV1 178 437 -31 681 196 92 18 chr1 58386282 58386445 -223807219 - AluSp SINE Alu -10 303 129 4384 111 5 67 chr1 58386454 58387143 -223806521 + LTR8 LTR ERV1 1 644 -47 7928 51 5 0 chr1 58387143 58388104 -223805560 - LTR5 LTR ERVK -3 966 1 4384 111 5 67 chr1 58388104 58388150 -223805514 + LTR8 LTR ERV1 644 691 0 1054 76 6 57 chr1 58388153 58388310 -223805354 - MER83 LTR ERV1 -299 149 1 613 206 22 28 chr1 58388310 58388333 -223805331 + Charlie2 DNA MER1_type 2506 2528 -334 4096 52 79 12 chr1 58388333 58388783 -223804881 - LTR61 LTR ERV1 0 595 99 2142 123 0 3 chr1 58388783 58389091 -223804573 - AluSc SINE Alu -2 307 1 4096 52 79 12 chr1 58389091 58389198 -223804466 - LTR61 LTR ERV1 -496 99 1 613 206 22 28 chr1 58389198 58389354 -223804310 + Charlie2 DNA MER1_type 2528 2684 -178 2212 71 10 0 chr1 58389354 58389648 -223804016 + AluY SINE Alu 1 297 -14 2157 113 3 0 chr1 58389687 58389989 -223803675 - AluSx SINE Alu -9 303 1 2094 146 51 0 chr1 58389990 58390340 -223803324 + MLT1B LTR MaLR 23 390 0 230 268 54 0 chr1 58390343 58390399 -223803265 + L2 LINE L2 2553 2611 -703 205 295 0 77 chr1 58390406 58390484 -223803180 + L2 LINE L2 3195 3266 -47 1642 117 0 8 chr1 58390509 58390748 -223802916 + AluSx SINE Alu 1 237 -75 268 152 0 0 chr1 58390748 58390794 -223802870 - Alu SINE Alu -5 297 252 401 77 0 0 chr1 58390897 58390949 -223802715 - Alu SINE Alu -260 52 1 442 140 0 97 chr1 58390949 58391042 -223802622 + Alu SINE Alu 228 311 0 180 0 0 0 chr1 58391067 58391087 -223802577 + (TG)n Simple_repeat Simple_repeat 2 21 0 218 133 0 22 chr1 58391089 58391134 -223802530 + (TA)n Simple_repeat Simple_repeat 1 44 0 273 214 0 143 chr1 58391550 58391648 -223802016 + MIR SINE MIR 90 173 -89 1572 130 45 34 chr1 58391899 58392191 -223801473 - AluJo SINE Alu -17 295 1 395 291 154 33 chr1 58392346 58392528 -223801136 - MIR SINE MIR -56 206 3 1661 174 0 3 chr1 58392555 58392837 -223800827 - AluJb SINE Alu -27 285 5 2013 130 0 0 chr1 58392957 58393250 -223800414 - AluSx SINE Alu -19 293 1 235 258 79 45 chr1 58393260 58393349 -223800315 + MIR SINE MIR 52 143 -65 * 706 272 115 32 chr1 58393307 58393645 -223800019 + L2 LINE L2 2947 3312 -1 462 231 127 22 chr1 58393663 58393797 -223799867 + L3 LINE CR1 1317 1464 -113 27 49 0 0 chr1 58394074 58394115 -223799549 + AT_rich Low_complexity Low_complexity 1 41 0 260 324 105 37 chr1 58394211 58394337 -223799327 + L2 LINE L2 2435 2551 -721 705 204 0 0 chr1 58394337 58394469 -223799195 - FLAM_A SINE Alu -1 132 1 1893 134 20 3 chr1 58394471 58394770 -223798894 - AluSx SINE Alu -8 304 1 260 324 105 37 chr1 58394770 58395188 -223798476 + L2 LINE L2 2551 3023 -249 266 260 163 24 chr1 58395314 58395437 -223798227 + MIR SINE MIR 53 192 -70 329 329 93 33 chr1 58395713 58395974 -223797690 - L2 LINE L2 -301 2971 2732 242 150 17 83 chr1 58396328 58396388 -223797276 - MIR SINE MIR -64 144 89 1136 237 80 62 chr1 58396476 58396974 -223796690 + MLT1H LTR MaLR 43 549 0 603 352 53 50 chr1 58397035 58397433 -223796231 + L2 LINE L2 2473 2871 -443 532 211 0 0 chr1 58397660 58397755 -223795909 + FLAM_C SINE Alu 15 109 -34 2087 105 0 3 chr1 58397880 58398187 -223795477 - AluSx SINE Alu 0 306 1 1727 161 6 22 chr1 58398189 58398505 -223795159 - 7SLRNA srpRNA srpRNA -6 314 4 637 234 73 21 chr1 58398557 58398749 -223794915 + MIR SINE MIR 5 206 -56 2195 99 3 3 chr1 58398837 58399139 -223794525 + AluSp SINE Alu 1 302 -11 1213 45 13 0 chr1 58399312 58399468 -223794196 - AluY SINE Alu -8 303 146 2036 59 0 0 chr1 58399763 58400018 -223793646 - AluY SINE Alu -56 255 1 2071 96 3 7 chr1 58400018 58400309 -223793355 - AluSx SINE Alu -12 300 10 737 82 0 0 chr1 58400827 58400925 -223792739 - AluSp/q SINE Alu -9 304 207 1858 104 60 0 chr1 58400935 58401204 -223792460 - AluSx SINE Alu -23 289 5 592 278 69 57 chr1 58401397 58401642 -223792022 - MIR SINE MIR -13 249 2 413 326 207 12 chr1 58401827 58402403 -223791261 - L2 LINE L2 -2416 898 211 1944 100 17 28 chr1 58402787 58403098 -223790566 - AluSx SINE Alu 0 308 1 262 320 120 0 chr1 58403220 58403345 -223790319 - L2 LINE L2 -2621 693 554 266 294 217 22 chr1 58403432 58403612 -223790052 - L2 LINE L2 -661 2653 2439 21 36 0 0 chr1 58404001 58404029 -223789635 + GC_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 58404105 58404134 -223789530 + GC_rich Low_complexity Low_complexity 1 29 0 338 304 0 0 chr1 58404749 58404828 -223788836 + L2 LINE L2 3192 3270 -2 217 310 0 0 chr1 58405069 58405127 -223788537 + MIR SINE MIR 204 261 -1 494 167 0 36 chr1 58405349 58405433 -223788231 - MER8 DNA MER2_type 0 239 159 860 222 0 5 chr1 58405433 58405622 -223788042 + AluJo SINE Alu 120 307 -5 758 256 0 0 chr1 58405622 58405778 -223787886 - MER8 DNA MER2_type -83 156 1 259 372 22 15 chr1 58405818 58405955 -223787709 - MIR SINE MIR -55 153 16 378 268 92 61 chr1 58406048 58406212 -223787452 - MIR SINE MIR -74 188 20 1660 193 0 13 chr1 58406854 58407042 -223786622 - AluJo SINE Alu -5 307 123 2475 53 0 0 chr1 58407042 58407342 -223786322 + AluY SINE Alu 1 300 -11 1660 193 0 13 chr1 58407342 58407464 -223786200 - AluJo SINE Alu -189 123 1 336 298 0 106 chr1 58407526 58407667 -223785997 + MIR3 SINE MIR 33 158 -50 468 278 111 0 chr1 58407808 58407952 -223785712 - MIR SINE MIR -57 205 46 188 333 17 17 chr1 58408403 58408463 -223785201 - MIR SINE MIR -58 150 91 256 288 89 17 chr1 58408507 58408630 -223785034 + MIR SINE MIR 43 185 -23 637 213 24 118 chr1 58408710 58408890 -223784774 + L1ME4a LINE L1 5613 5764 -357 1565 98 5 0 chr1 58408890 58409104 -223784560 + AluSg/x SINE Alu 92 306 -6 637 213 24 118 chr1 58409104 58409177 -223784487 + L1ME4a LINE L1 5764 5842 -279 2148 90 10 13 chr1 58409298 58409609 -223784055 - AluSg SINE Alu 0 310 1 1944 150 0 0 chr1 58409614 58409914 -223783750 - AluSx SINE Alu -12 300 1 7333 117 38 40 chr1 58409974 58410259 -223783405 - Tigger3b DNA MER2_type -1797 1231 947 1508 124 124 12 chr1 58410259 58410518 -223783146 - AluSg1 SINE Alu -19 290 3 7333 117 38 40 chr1 58410518 58410805 -223782859 - Tigger3b DNA MER2_type -2081 947 661 2080 105 17 0 chr1 58410805 58411120 -223782544 - AluSx SINE Alu 0 312 1 7333 117 38 40 chr1 58411120 58411173 -223782491 - Tigger3b DNA MER2_type -2367 661 609 765 257 0 0 chr1 58411173 58411325 -223782339 - FRAM SINE Alu -14 152 1 7333 117 38 40 chr1 58411325 58411931 -223781733 - Tigger3b DNA MER2_type -2419 609 1 1848 140 11 0 chr1 58412264 58412567 -223781097 + AluJb SINE Alu 1 306 0 1842 154 10 0 chr1 58413147 58413445 -223780219 - AluJo SINE Alu -11 301 1 286 186 21 110 chr1 58413466 58413537 -223780127 + L1ME4a LINE L1 5965 6018 -103 2124 75 7 14 chr1 58413537 58413830 -223779834 - AluY SINE Alu -20 291 1 286 186 21 110 chr1 58413830 58413903 -223779761 + L1ME4a LINE L1 6018 6096 -25 2217 113 0 0 chr1 58414021 58414323 -223779341 + AluSq SINE Alu 1 302 -11 334 262 0 56 chr1 58415221 58415328 -223778336 - MIR SINE MIR -64 198 98 274 347 0 0 chr1 58415335 58415407 -223778257 - L2 LINE L2 -8 3264 3193 229 286 116 70 chr1 58415482 58415681 -223777983 - L2 LINE L2 -236 3036 2829 819 171 0 0 chr1 58415761 58415901 -223777763 - FRAM SINE Alu -1 175 36 476 241 63 115 chr1 58416003 58416273 -223777391 + L2 LINE L2 3017 3272 0 603 307 139 0 chr1 58416942 58417157 -223776507 + MIR SINE MIR 13 257 -5 1216 156 0 5 chr1 58417209 58417440 -223776224 + AluJb SINE Alu 85 314 0 1603 207 133 46 chr1 58417443 58417586 -223776078 - MLT1F LTR MaLR -43 499 370 2283 88 0 0 chr1 58417586 58417880 -223775784 - AluSg SINE Alu -16 294 1 1603 207 133 46 chr1 58417880 58418195 -223775469 - MLT1F LTR MaLR -172 370 1 1951 150 0 0 chr1 58418360 58418660 -223775004 - AluSx SINE Alu -12 300 1 394 241 127 52 chr1 58418729 58418941 -223774723 - MIR SINE MIR -15 247 20 866 228 6 6 chr1 58419111 58419282 -223774382 + MER5A DNA MER1_type 18 188 -1 205 209 0 47 chr1 58419307 58419350 -223774314 - L2 LINE L2 -10 3262 3222 1457 278 51 22 chr1 58419578 58420085 -223773579 + Charlie7 DNA MER1_type 40 561 -2051 717 94 0 10 chr1 58420086 58420182 -223773482 - 5S rRNA rRNA -25 96 2 35 41 0 0 chr1 58420300 58420349 -223773315 + AT_rich Low_complexity Low_complexity 1 49 0 467 75 12 12 chr1 58420577 58420657 -223773007 + L1MA10 LINE L1 6253 6332 -2 959 214 110 66 chr1 58420749 58421066 -223772598 - MLT1B LTR MaLR 0 390 60 237 65 0 0 chr1 58421086 58421117 -223772547 + (A)n Simple_repeat Simple_repeat 1 31 0 365 137 0 0 chr1 58421151 58421202 -223772462 - MLT1B LTR MaLR -322 52 2 1284 215 7 51 chr1 58421287 58421406 -223772258 + Tigger7 DNA MER2_type 6 129 -604 1987 122 21 0 chr1 58421406 58421694 -223771970 - AluSx SINE Alu -18 294 1 1284 215 7 51 chr1 58421694 58421848 -223771816 + Tigger7 DNA MER2_type 129 267 -466 2094 117 3 3 chr1 58421864 58422172 -223771492 + AluSg SINE Alu 3 310 0 578 141 0 50 chr1 58422172 58422271 -223771393 + Tigger7 DNA MER2_type 2393 2486 -1 2314 221 10 30 chr1 58422417 58422915 -223770749 + LTR28 LTR ERV1 484 971 -49 382 284 86 43 chr1 58423120 58423400 -223770264 - L2 LINE L2 -295 2977 2677 561 306 79 48 chr1 58423433 58423724 -223769940 - L2 LINE L2 0 3313 3014 205 333 49 12 chr1 58423851 58423932 -223769732 + L2 LINE L2 3229 3312 -1 210 203 398 0 chr1 58423949 58424067 -223769597 - L3 LINE CR1 -309 1268 1104 195 319 151 25 chr1 58424102 58424221 -223769443 + MIR SINE MIR 20 153 -55 1124 244 93 10 chr1 58424308 58424599 -223769065 + L3 LINE CR1 1251 1565 -12 2038 142 3 0 chr1 58424970 58425265 -223768399 - AluJb SINE Alu -16 296 1 268 247 54 11 chr1 58425266 58425359 -223768305 + MIR SINE MIR 50 146 -116 473 285 131 9 chr1 58425424 58425638 -223768026 + MIR SINE MIR 20 259 -3 222 310 0 0 chr1 58425667 58425725 -223767939 + MIR SINE MIR 198 255 -7 335 269 46 8 chr1 58426175 58426305 -223767359 - MIR SINE MIR -14 248 114 28 29 0 0 chr1 58426310 58426345 -223767319 + AT_rich Low_complexity Low_complexity 1 35 0 431 277 5 65 chr1 58426395 58426565 -223767099 - MIR SINE MIR -65 143 19 344 269 39 10 chr1 58426743 58426847 -223766817 - MIR SINE MIR 0 262 156 15044 98 36 78 chr1 58426847 58427029 -223766635 - Tigger1 DNA MER2_type 0 2418 2230 1014 156 24 6 chr1 58427029 58427196 -223766468 + AluJo SINE Alu 120 289 -23 15044 98 36 78 chr1 58427196 58428950 -223764714 - Tigger1 DNA MER2_type -188 2230 435 2148 127 0 0 chr1 58428950 58429274 -223764390 - AluSx SINE Alu 0 324 1 15044 98 36 78 chr1 58429274 58429687 -223763977 - Tigger1 DNA MER2_type -1983 435 6 251 220 85 0 chr1 58429687 58429746 -223763918 - MIR SINE MIR -108 154 91 298 275 58 0 chr1 58429747 58429816 -223763848 - MLT1E LTR MaLR -520 73 1 318 286 12 0 chr1 58429816 58429900 -223763764 - MIR SINE MIR -173 89 5 202 311 100 11 chr1 58429907 58429997 -223763667 - L2 LINE L2 -5 3308 3211 255 217 0 0 chr1 58430458 58430518 -223763146 + (TTCA)n Simple_repeat Simple_repeat 4 63 0 470 363 26 15 chr1 58430784 58431054 -223762610 + L2 LINE L2 2471 2743 -571 1160 253 172 3 chr1 58431317 58431665 -223761999 + MLT1I LTR MaLR 3 409 0 1968 159 10 0 chr1 58431739 58432035 -223761629 - AluSx SINE Alu -13 299 1 196 217 0 0 chr1 58432255 58432296 -223761368 + MIR SINE MIR 115 154 -108 1674 174 22 0 chr1 58432514 58432789 -223760875 + AluJo SINE Alu 14 294 -18 1008 142 0 31 chr1 58432789 58432951 -223760713 + AluJo/FRAM SINE Alu 137 293 -9 377 303 12 47 chr1 58432953 58433114 -223760550 + MIR SINE MIR 48 202 -60 288 255 21 21 chr1 58433132 58433226 -223760438 + U6 snRNA snRNA 7 100 -7 352 183 83 101 chr1 58433351 58433417 -223760247 - L1ME4a LINE L1 -1 6120 6054 1877 135 53 0 chr1 58433417 58433699 -223759965 + AluJb SINE Alu 3 299 -13 352 183 83 101 chr1 58433699 58433801 -223759863 - L1ME4a LINE L1 -67 6054 5955 619 295 16 69 chr1 58433888 58434193 -223759471 - L1ME4a LINE L1 -350 5771 5483 861 213 12 0 chr1 58434208 58434372 -223759292 + FRAM SINE Alu 1 166 0 2418 82 3 0 chr1 58434576 58434870 -223758794 + AluSp SINE Alu 1 295 -18 660 310 24 90 chr1 58435096 58435259 -223758405 - L2 LINE L2 0 3272 3100 2528 93 0 0 chr1 58435259 58435571 -223758093 + AluSx SINE Alu 1 312 0 660 310 24 90 chr1 58435571 58435784 -223757880 - L2 LINE L2 -172 3100 2921 182 227 31 10 chr1 58436551 58436648 -223757016 + CT-rich Low_complexity Low_complexity 2 100 0 187 277 129 50 chr1 58437236 58437337 -223756327 - L2 LINE L2 -2 3270 3162 319 263 15 36 chr1 58437503 58437574 -223756090 - L1ME4a LINE L1 0 6121 6053 2476 74 0 16 chr1 58437574 58437884 -223755780 - AluY SINE Alu -6 305 1 319 263 15 36 chr1 58437884 58437949 -223755715 - L1ME4a LINE L1 -68 6053 5988 1536 165 103 32 chr1 58438555 58438894 -223754770 - MLT1A1 LTR MaLR 0 365 3 23 0 0 0 chr1 58439294 58439317 -223754347 + AT_rich Low_complexity Low_complexity 1 23 0 267 289 176 56 chr1 58441007 58441381 -223752283 - L2 LINE L2 -1 3271 2853 2368 77 0 3 chr1 58441493 58441778 -223751886 - AluSq SINE Alu -19 294 11 918 163 11 124 chr1 58441819 58442101 -223751563 - MIR SINE MIR -10 252 3 375 299 119 16 chr1 58442117 58442311 -223751353 - MIR SINE MIR 0 262 49 201 315 146 0 chr1 58442482 58442571 -223751093 + L2 LINE L2 3122 3223 -49 298 293 103 29 chr1 58442595 58442753 -223750911 - L2 LINE L2 0 3313 3139 374 109 16 0 chr1 58442753 58442817 -223750847 + L1MB8 LINE L1 6112 6176 -2 298 293 103 29 chr1 58442817 58442832 -223750832 - L2 LINE L2 -174 3139 3127 357 202 0 128 chr1 58442836 58442906 -223750758 - MLT1K LTR MaLR -6 582 529 2049 116 49 7 chr1 58442906 58443191 -223750473 + AluSx SINE Alu 1 297 -15 357 202 0 128 chr1 58443191 58443229 -223750435 - MLT1K LTR MaLR -59 529 488 271 231 51 43 chr1 58443343 58443460 -223750204 - MLT1K LTR MaLR -274 314 128 333 337 78 30 chr1 58443567 58443871 -223749793 - L2 LINE L2 -179 3093 2777 2516 70 0 0 chr1 58444115 58444415 -223749249 + AluSp SINE Alu 1 300 -13 1768 154 0 82 chr1 58444698 58445028 -223748636 - AluJb SINE Alu -9 303 1 434 320 10 35 chr1 58445068 58445265 -223748399 + MIR3 SINE MIR 16 207 -1 224 322 44 22 chr1 58445707 58445797 -223747867 - MIR SINE MIR -152 110 19 423 272 73 15 chr1 58445882 58446161 -223747503 - MLT1I LTR MaLR -19 390 74 251 286 143 0 chr1 58446228 58446319 -223747345 - L2 LINE L2 -55 3217 3114 338 258 105 8 chr1 58446421 58446576 -223747088 + LTR33A LTR ERVL 55 253 -268 520 219 194 0 chr1 58446603 58446758 -223746906 + LTR33A LTR ERVL 339 523 0 226 254 17 0 chr1 58447044 58447103 -223746561 - MLT1K LTR MaLR 0 588 529 214 333 18 42 chr1 58447151 58447319 -223746345 - L2 LINE L2 -2591 723 560 401 283 41 73 chr1 58448115 58448334 -223745330 + L2 LINE L2 3015 3226 -46 220 215 269 0 chr1 58448420 58448513 -223745151 - L2 LINE L2 -4 3268 3151 195 100 0 0 chr1 58448652 58448682 -223744982 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 411 195 0 23 chr1 58448682 58448769 -223744895 - AluJ/FLAM SINE Alu -226 86 2 2469 77 3 0 chr1 58448789 58449088 -223744576 - AluSx SINE Alu -12 300 1 216 339 0 0 chr1 58449463 58449525 -223744139 + L2 LINE L2 3241 3302 -11 2389 87 0 28 chr1 58449525 58449846 -223743818 + AluSx SINE Alu 1 312 0 512 223 27 0 chr1 58450012 58450124 -223743540 - MIR SINE MIR -73 189 75 208 143 48 0 chr1 58450891 58450933 -223742731 - MIR SINE MIR -92 116 73 538 310 75 9 chr1 58451050 58451263 -223742401 + MIR SINE MIR 28 254 -8 192 320 31 55 chr1 58451837 58451965 -223741699 + MIR SINE MIR 88 212 -50 489 341 23 6 chr1 58452032 58452205 -223741459 - MIR SINE MIR -29 233 58 2981 9 0 0 chr1 58453239 58453557 -223740107 + AluYb8 SINE Alu 1 318 0 461 239 107 68 chr1 58453888 58454151 -223739513 - L3 LINE CR1 -129 1448 1176 1823 152 11 22 chr1 58454676 58454953 -223738711 + AluJb SINE Alu 9 282 -30 504 282 86 25 chr1 58455025 58455188 -223738476 + MIR3 SINE MIR 17 189 -19 961 221 27 14 chr1 58455296 58455518 -223738146 - MIR SINE MIR -24 238 14 222 266 92 55 chr1 58455533 58455642 -223738022 - MIR SINE MIR -122 140 28 2262 90 13 3 chr1 58456530 58456830 -223736834 + AluSx SINE Alu 1 303 -9 403 321 18 24 chr1 58457027 58457192 -223736472 - MIR3 SINE MIR -3 205 42 203 222 111 0 chr1 58457324 58457396 -223736268 - MIR SINE MIR -108 154 75 188 343 30 15 chr1 58457973 58458040 -223735624 - L2 LINE L2 -50 3222 3155 724 206 192 87 chr1 58458388 58458750 -223734914 - MLT1H LTR MaLR -21 528 68 2208 119 0 0 chr1 58458750 58459044 -223734620 + AluSx SINE Alu 1 294 -18 724 206 192 87 chr1 58459044 58459120 -223734544 - MLT1H LTR MaLR -481 68 1 757 271 166 6 chr1 58459480 58459898 -223733766 + L2 LINE L2 2143 2674 -640 450 0 0 0 chr1 58459919 58459969 -223733695 + (TA)n Simple_repeat Simple_repeat 2 51 0 700 182 23 15 chr1 58459971 58460103 -223733561 - FLAM_C SINE Alu 0 133 1 1254 138 4 67 chr1 58460181 58460455 -223733209 + AluJb SINE Alu 87 345 0 188 333 0 0 chr1 58460500 58460554 -223733110 + MIR SINE MIR 54 107 -101 238 148 98 66 chr1 58460981 58461042 -223732622 + MLT1K LTR MaLR 509 571 -17 245 27 54 0 chr1 58461115 58461152 -223732512 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 606 268 39 35 chr1 58462366 58462597 -223731067 + MIR SINE MIR 9 240 -22 270 281 12 37 chr1 58463037 58463119 -223730545 + MIR SINE MIR 32 111 -97 342 264 39 79 chr1 58463586 58463764 -223729900 - MIR SINE MIR -31 231 61 2292 105 0 10 chr1 58464629 58464934 -223728730 + AluSx SINE Alu 1 302 -10 228 250 54 0 chr1 58465478 58465534 -223728130 + L2 LINE L2 2960 3018 -254 2499 82 0 13 chr1 58465725 58465906 -223727758 - AluSp SINE Alu 0 313 136 2297 58 39 32 chr1 58465906 58466215 -223727449 - AluY SINE Alu 0 311 1 2499 82 0 13 chr1 58466215 58466350 -223727314 - AluSp SINE Alu -177 136 1 192 77 0 0 chr1 58467030 58467056 -223726608 + (TTG)n Simple_repeat Simple_repeat 2 27 0 265 252 96 46 chr1 58467644 58467819 -223725845 + MIR SINE MIR 18 212 -50 192 152 0 0 chr1 58468110 58468143 -223725521 + A-rich Low_complexity Low_complexity 1 33 0 193 343 71 10 chr1 58468959 58469058 -223724606 + L2 LINE L2 2943 3047 -225 2563 64 3 6 chr1 58469176 58469488 -223724176 - AluY SINE Alu 0 311 1 1109 118 0 0 chr1 58469488 58469632 -223724032 - AluSq/x SINE Alu -169 144 1 286 165 71 82 chr1 58469746 58469831 -223723833 + MIR SINE MIR 48 131 -131 247 312 128 9 chr1 58470419 58470528 -223723136 + L2 LINE L2 3151 3272 0 1957 142 10 26 chr1 58470538 58470840 -223722824 - AluJb SINE Alu -15 297 1 991 235 93 25 chr1 58471143 58471673 -223721991 + L2 LINE L2 2701 3280 -33 2420 80 3 3 chr1 58471764 58472065 -223721599 - AluY SINE Alu -10 301 1 2351 98 3 7 chr1 58472371 58472676 -223720988 - AluSg SINE Alu -6 304 1 357 267 37 63 chr1 58472750 58472941 -223720723 + MIR3 SINE MIR 23 208 0 998 118 0 7 chr1 58473165 58473301 -223720363 + AluSq/x SINE Alu 1 135 -178 2063 146 0 0 chr1 58473301 58473596 -223720068 + AluSx SINE Alu 1 295 -17 343 257 139 0 chr1 58474046 58474147 -223719517 + MIR SINE MIR 36 150 -112 316 235 0 61 chr1 58474263 58474361 -223719303 - L1MC4 LINE L1 -1339 6703 6612 1997 111 36 7 chr1 58474393 58474672 -223718992 - AluSx SINE Alu -25 287 1 221 352 0 14 chr1 58474756 58474827 -223718837 + MIR3 SINE MIR 2 71 -137 198 298 62 51 chr1 58474892 58475070 -223718594 + L2 LINE L2 3127 3306 -7 1985 157 3 0 chr1 58475393 58475687 -223717977 + AluSx SINE Alu 1 295 -17 411 255 148 27 chr1 58475804 58475953 -223717711 + L1ME4a LINE L1 5955 6121 0 267 253 40 0 chr1 58476246 58476321 -223717343 - MIR SINE MIR -2 260 183 426 241 95 25 chr1 58476459 58476617 -223717047 - MIR SINE MIR -1 261 93 347 103 13 7 chr1 58476635 58476873 -223716791 + AluJb SINE Alu 1 302 0 201 335 112 40 chr1 58477040 58477192 -223716472 - L3 LINE CR1 -22 1555 1393 799 223 60 40 chr1 58477272 58477556 -223716108 + MER58 DNA MER1_type 1 2401 -19 2476 74 0 0 chr1 58477708 58478004 -223715660 - AluSg SINE Alu -14 296 1 1908 117 60 0 chr1 58478043 58478324 -223715340 - AluSq SINE Alu -15 298 1 181 370 11 0 chr1 58480885 58480977 -223712687 - L2 LINE L2 -188 3084 2992 819 124 118 6 chr1 58480990 58481151 -223712513 + MER53 DNA DNA 1 179 -10 705 171 23 16 chr1 58481163 58481292 -223712372 - FLAM_C SINE Alu -3 130 1 2129 148 0 0 chr1 58481299 58481610 -223712054 - AluSx SINE Alu -1 311 1 496 244 28 56 chr1 58481818 58481974 -223711690 + MIR SINE MIR 53 205 -57 2184 91 13 20 chr1 58481974 58482272 -223711392 + AluSq SINE Alu 1 296 -17 496 244 28 56 chr1 58482272 58482295 -223711369 + MIR SINE MIR 205 227 -35 738 236 99 47 chr1 58482402 58482635 -223711029 + MIR SINE MIR 2 246 -16 8663 105 47 79 chr1 58482635 58483752 -223709912 - Tigger2 DNA MER2_type 0 2718 1660 2286 100 7 0 chr1 58483752 58484051 -223709613 - AluSp SINE Alu -12 301 1 8663 105 47 79 chr1 58484051 58484460 -223709204 - Tigger2 DNA MER2_type -1058 1660 1240 876 205 0 35 chr1 58484461 58484632 -223709032 - AluJ SINE Alu -1 301 137 396 74 19 0 chr1 58484632 58484686 -223708978 - AluJ SINE Alu -166 136 82 * 3008 98 37 60 chr1 58484683 58484856 -223708808 - Tigger2 DNA MER2_type -1472 1246 1071 2060 120 17 3 chr1 58484856 58485148 -223708516 - AluSx SINE Alu -16 296 1 3008 98 37 60 chr1 58485148 58485493 -223708171 - Tigger2 DNA MER2_type -1647 1071 740 572 165 0 0 chr1 58485500 58485591 -223708073 - FLAM_C SINE Alu -18 125 35 257 80 60 0 chr1 58485597 58485647 -223708017 + Alu SINE Alu 256 308 0 1076 152 0 0 chr1 58485653 58485811 -223707853 - Tigger2 DNA MER2_type -1960 758 601 6740 113 44 38 chr1 58485914 58486094 -223707570 - Tigger3b DNA MER2_type -1896 1132 955 1619 124 124 12 chr1 58486094 58486353 -223707311 - AluSg1 SINE Alu -19 290 3 6740 113 44 38 chr1 58486353 58486640 -223707024 - Tigger3b DNA MER2_type -2073 955 671 2192 108 17 0 chr1 58486640 58486955 -223706709 - AluSx SINE Alu 0 312 1 6740 113 44 38 chr1 58486955 58487008 -223706656 - Tigger3b DNA MER2_type -2357 671 620 757 257 0 0 chr1 58487008 58487160 -223706504 - FRAM SINE Alu -14 152 1 6740 113 44 38 chr1 58487160 58487762 -223705902 - Tigger3b DNA MER2_type -2408 620 1 1982 136 11 0 chr1 58488095 58488398 -223705266 + AluJb SINE Alu 1 306 0 1961 154 10 0 chr1 58488978 58489276 -223704388 - AluJo SINE Alu -11 301 1 271 177 16 16 chr1 58489297 58489359 -223704305 + L1ME4a LINE L1 5965 6026 -95 2236 78 7 14 chr1 58489368 58489661 -223704003 - AluY SINE Alu -20 291 1 1173 209 140 32 chr1 58489661 58489976 -223703688 - MLT1F LTR MaLR -193 349 1 2074 150 0 0 chr1 58490141 58490441 -223703223 - AluSx SINE Alu -12 300 1 342 216 118 59 chr1 58490569 58490722 -223702942 - MIR SINE MIR -81 181 20 519 202 32 8 chr1 58490892 58491016 -223702648 + MER5A DNA MER1_type 18 144 -45 2492 144 32 42 chr1 58491121 58491333 -223702331 - Tigger2 DNA MER2_type -2237 481 268 1465 134 145 30 chr1 58491333 58491349 -223702315 - AluSg SINE Alu 0 300 287 2305 118 0 3 chr1 58491349 58491662 -223702002 - AluSx SINE Alu 0 312 1 1465 134 145 30 chr1 58491662 58491914 -223701750 - AluSg SINE Alu -13 287 1 2492 144 32 42 chr1 58491914 58492174 -223701490 - Tigger2 DNA MER2_type -2450 268 14 2161 119 0 13 chr1 58492175 58492477 -223701187 + AluSx SINE Alu 1 298 -14 2679 48 0 3 chr1 58492477 58492787 -223700877 + AluY SINE Alu 1 309 -2 247 237 172 11 chr1 58493129 58493222 -223700442 + MIR SINE MIR 39 146 -62 313 277 59 94 chr1 58493384 58493586 -223700078 + MIR SINE MIR 14 208 -54 245 358 16 16 chr1 58493729 58493852 -223699812 + L2 LINE L2 2736 2858 -456 2108 108 7 36 chr1 58493889 58494050 -223699614 - AluSx SINE Alu -16 296 147 2352 89 3 0 chr1 58494050 58494342 -223699322 - AluSp SINE Alu -18 295 3 2108 108 7 36 chr1 58494342 58494485 -223699179 - AluSx SINE Alu -165 147 1 306 330 237 7 chr1 58494508 58494808 -223698856 + L2 LINE L2 2904 3272 0 444 276 45 0 chr1 58494956 58495112 -223698552 + MIR SINE MIR 100 262 0 265 286 14 0 chr1 58495132 58495202 -223698462 - MIR SINE MIR -139 123 53 456 280 63 65 chr1 58495767 58496114 -223697550 + L1MEd LINE L1 790 1137 -5235 1987 150 3 7 chr1 58496114 58496414 -223697250 + AluSx SINE Alu 1 299 -13 456 280 63 65 chr1 58496414 58496463 -223697201 + L1MEd LINE L1 1137 1185 -5187 1407 154 47 7 chr1 58496474 58496753 -223696911 + L1MC2 LINE L1 5789 6078 -266 1552 125 155 0 chr1 58496804 58497068 -223696596 + MLT1B LTR MaLR 86 390 0 887 88 1 5 chr1 58497069 58497207 -223696457 + L1MC2 LINE L1 6077 7673 -112 239 144 155 0 chr1 58497185 58497243 -223696421 + L1MEd LINE L1 1631 1840 -4688 * 890 112 6 99 chr1 58497251 58497363 -223696301 + MLT1C LTR MaLR 322 416 -51 1955 122 52 0 chr1 58497363 58497633 -223696031 + AluJo SINE Alu 11 294 -18 890 112 6 99 chr1 58497633 58497681 -223695983 + MLT1C LTR MaLR 416 467 0 1031 227 39 8 chr1 58497681 58497941 -223695723 - L2 LINE L2 -653 2661 2394 1092 78 0 42 chr1 58498016 58498158 -223695506 + AluSq/x SINE Alu 1 136 -177 2056 108 0 73 chr1 58498158 58498473 -223695191 + AluSc SINE Alu 1 292 -17 1037 313 41 3 chr1 58498499 58498867 -223694797 - L2 LINE L2 -1648 1666 1285 725 187 24 0 chr1 58499042 58499165 -223694499 + FLAM_A SINE Alu 1 126 -7 292 264 109 40 chr1 58499289 58499592 -223694072 + L1MEc LINE L1 2023 2346 -4050 1883 159 0 29 chr1 58499600 58499909 -223693755 + AluJo SINE Alu 1 300 -12 1986 133 36 0 chr1 58500002 58500281 -223693383 + AluSx SINE Alu 1 289 -23 207 0 0 0 chr1 58500281 58500304 -223693360 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 635 184 197 0 chr1 58500391 58500538 -223693126 + MER3 DNA MER1_type 1 129 -80 242 270 287 0 chr1 58500542 58500657 -223693007 - MIR3 SINE MIR -40 168 21 1873 120 72 0 chr1 58500742 58501018 -223692646 + AluSg SINE Alu 1 296 -14 898 127 0 15 chr1 58501123 58501257 -223692407 - FLAM_C SINE Alu -1 132 1 887 220 86 25 chr1 58501300 58501545 -223692119 - MIR SINE MIR -2 260 1 509 229 32 76 chr1 58502443 58502600 -223691064 + MIR SINE MIR 113 262 0 274 207 0 35 chr1 58502667 58502725 -223690939 - MIR3 SINE MIR -13 195 140 2420 86 0 10 chr1 58502793 58503097 -223690567 - AluSx SINE Alu -11 301 1 1026 194 73 46 chr1 58503731 58504153 -223689511 + MLT1G1 LTR MaLR 51 590 0 472 165 92 0 chr1 58504266 58504375 -223689289 - MIR SINE MIR -96 166 48 2064 109 12 70 chr1 58504380 58504711 -223688953 + AluSx SINE Alu 1 312 0 2399 86 0 22 chr1 58504803 58505116 -223688548 + AluSg SINE Alu 1 306 -4 773 280 16 49 chr1 58505205 58505509 -223688155 + L2 LINE L2 3020 3313 0 195 42 0 0 chr1 58507701 58507725 -223685939 + (CCG)n Simple_repeat Simple_repeat 1 24 0 229 242 63 32 chr1 58508482 58508577 -223685087 - MIR SINE MIR -74 188 91 185 250 0 21 chr1 58508870 58508918 -223684746 + MIR SINE MIR 103 149 -59 180 261 0 22 chr1 58509028 58509074 -223684590 + L3b LINE CR1 1526 1570 -13 2518 54 7 0 chr1 58510026 58510321 -223683343 - AluSp SINE Alu -16 297 1 540 303 87 5 chr1 58511528 58511723 -223681941 + MIR SINE MIR 52 262 0 2302 101 3 0 chr1 58512636 58512932 -223680732 + AluSx SINE Alu 9 305 -7 2404 101 0 3 chr1 58513054 58513362 -223680302 - AluSp SINE Alu -6 307 1 1835 90 4 28 chr1 58513364 58513619 -223680045 - AluY SINE Alu -19 292 44 2573 66 0 0 chr1 58513619 58513919 -223679745 - AluSg SINE Alu -9 301 1 238 359 100 13 chr1 58513952 58514183 -223679481 - L2 LINE L2 -458 2856 2606 2101 138 9 21 chr1 58514184 58514524 -223679140 - MER1B DNA MER1_type 0 337 2 233 313 83 60 chr1 58514532 58514797 -223678867 - L2 LINE L2 -774 2540 2270 946 285 171 19 chr1 58515160 58515814 -223677850 + L2 LINE L2 2434 3203 -110 2431 87 0 0 chr1 58516689 58516987 -223676677 - AluSx SINE Alu -14 298 1 2279 113 0 0 chr1 58517177 58517470 -223676194 + AluSx SINE Alu 1 293 -19 1102 150 12 0 chr1 58517615 58517782 -223675882 - AluSg/x SINE Alu -12 300 132 1270 103 15 20 chr1 58517784 58517988 -223675676 + Tigger3(Golem) DNA MER2_type 2562 2764 -265 2436 58 0 10 chr1 58517992 58518285 -223675379 + AluY SINE Alu 3 292 -19 1815 97 4 4 chr1 58518383 58518620 -223675044 + AluSx SINE Alu 1 237 -75 1002 216 5 41 chr1 58519201 58519419 -223674245 - MER20 DNA MER1_type -8 211 2 263 271 80 66 chr1 58519717 58519868 -223673796 - L2 LINE L2 -16 3297 3145 * 383 231 87 58 chr1 58519854 58520027 -223673637 - MIR SINE MIR -59 203 26 383 178 0 7 chr1 58521342 58521424 -223672240 + AluS SINE Alu 1 58 -250 447 141 0 0 chr1 58571424 58571495 -223622169 - AluS SINE Alu -241 72 2 2291 109 7 0 chr1 58571496 58571800 -223621864 - AluSc SINE Alu -3 306 1 1943 123 49 0 chr1 58571802 58572086 -223621578 - AluSq SINE Alu -15 298 1 2106 133 0 13 chr1 58573115 58573417 -223620247 + AluSx SINE Alu 1 298 -14 2453 90 0 0 chr1 58574400 58574701 -223618963 + AluSq SINE Alu 1 301 -12 1734 166 0 21 chr1 58574783 58575106 -223618558 - AluSx SINE Alu 0 317 1 1982 132 13 19 chr1 58575172 58575482 -223618182 + AluJo SINE Alu 1 308 -4 2342 102 0 3 chr1 58575676 58575981 -223617683 - AluSg1 SINE Alu -5 304 1 1937 111 0 68 chr1 58576239 58576546 -223617118 + AluSq SINE Alu 1 286 -27 303 49 0 0 chr1 58576546 58576587 -223617077 + (TA)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr1 58576758 58576782 -223616882 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 29 65 chr1 58576791 58576929 -223616735 + FLAM_C SINE Alu 1 133 0 2046 120 7 10 chr1 58576978 58577278 -223616386 + AluSx SINE Alu 1 299 -13 215 320 0 0 chr1 58577333 58577408 -223616256 + MIR3 SINE MIR 117 191 -17 6946 63 5 40 chr1 58578019 58579737 -223613927 - SVA Other Other -683 1384 1 2356 86 7 3 chr1 58579788 58580091 -223613573 - AluSp SINE Alu -9 304 1 2192 123 3 0 chr1 58581139 58581432 -223612232 - AluSx SINE Alu -18 294 1 211 297 0 0 chr1 58581472 58581546 -223612118 + L2 LINE L2 2146 2219 -1095 1835 161 7 0 chr1 58581681 58581966 -223611698 + AluJo SINE Alu 1 287 -25 194 341 22 87 chr1 58581971 58582156 -223611508 + L2 LINE L2 2531 2726 -588 2215 117 3 0 chr1 58582156 58582455 -223611209 + AluSg SINE Alu 1 300 -10 194 341 22 87 chr1 58582455 58582481 -223611183 + L2 LINE L2 2726 2752 -562 2552 72 0 0 chr1 58582481 58582787 -223610877 - AluY SINE Alu -5 306 1 194 341 22 87 chr1 58582787 58582929 -223610735 + L2 LINE L2 2752 2862 -452 219 390 134 8 chr1 58583020 58583266 -223610398 + L2 LINE L2 2948 3224 -48 249 200 0 18 chr1 58583283 58583338 -223610326 + L1 LINE L1 2559 2612 -3534 2087 108 10 7 chr1 58583339 58583636 -223610028 + AluSg SINE Alu 1 298 -12 45461 38 2 0 chr1 58583643 58589784 -223603880 + L1PA3 LINE L1 5 6155 0 3055 189 67 35 chr1 58589768 58590558 -223603106 + L1 LINE L1 2589 3403 -2743 * 21 36 0 0 chr1 58591116 58591144 -223602520 + AT_rich Low_complexity Low_complexity 1 28 0 517 283 97 27 chr1 58591199 58591369 -223602295 - L2 LINE L2 -58 3255 3098 1776 175 10 7 chr1 58591369 58591666 -223601998 - AluJb SINE Alu -14 298 1 517 283 97 27 chr1 58591666 58591795 -223601869 - L2 LINE L2 -215 3098 2935 1790 171 10 17 chr1 58591969 58592268 -223601396 + AluJo SINE Alu 1 297 -15 2112 141 7 0 chr1 58592268 58592573 -223601091 + AluSx SINE Alu 1 307 -5 1497 153 84 4 chr1 58593878 58594152 -223599512 - AluJb SINE Alu -16 296 1 188 217 0 22 chr1 58594416 58594462 -223599202 + MER5A DNA MER1_type 1 45 -144 1517 182 52 7 chr1 58594472 58594763 -223598901 + Charlie1a DNA MER1_type 106 409 -1046 345 213 121 64 chr1 58595430 58595571 -223598093 - L1M4 LINE L1 -1975 4171 4023 26 0 0 0 chr1 58595571 58595597 -223598067 + AT_rich Low_complexity Low_complexity 1 26 0 1208 161 48 9 chr1 58595670 58595900 -223597764 - L1MB3 LINE L1 0 6183 5945 258 314 12 0 chr1 58595901 58595987 -223597677 - MIR SINE MIR -55 153 67 324 70 0 0 chr1 58596107 58596150 -223597514 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr1 58596227 58596247 -223597417 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 2154 139 0 0 chr1 58596271 58596574 -223597090 + AluSx SINE Alu 1 303 -9 1240 160 10 15 chr1 58596615 58596821 -223596843 + AluJb SINE Alu 86 290 -22 428 325 13 51 chr1 58596872 58596958 -223596706 + L3 LINE CR1 558 646 -931 708 115 107 49 chr1 58596958 58597080 -223596584 - FLAM_C SINE Alu -4 129 1 428 325 13 51 chr1 58597080 58597227 -223596437 + L3 LINE CR1 646 782 -795 25 0 0 0 chr1 58597268 58597293 -223596371 + AT_rich Low_complexity Low_complexity 1 25 0 219 239 0 0 chr1 58598399 58598445 -223595219 + (TGG)n Simple_repeat Simple_repeat 1 46 0 227 227 0 0 chr1 58598630 58598674 -223594990 + T-rich Low_complexity Low_complexity 1 44 0 2004 129 7 7 chr1 58599194 58599496 -223594168 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr1 58599714 58599752 -223593912 + AT_rich Low_complexity Low_complexity 1 38 0 231 290 97 32 chr1 58599795 58599888 -223593776 + L3 LINE CR1 966 1064 -513 203 182 0 23 chr1 58599890 58599934 -223593730 - L2 LINE L2 -5 3267 3225 748 90 36 0 chr1 58600071 58600182 -223593482 + AluY SINE Alu 2 116 -195 1676 59 0 5 chr1 58600789 58600993 -223592671 + AluY SINE Alu 102 304 -7 595 317 82 21 chr1 58601035 58601443 -223592221 + LTR16B LTR ERVL 1 464 0 636 289 58 9 chr1 58601443 58601668 -223591996 + HERV16 LTR ERVL 1 236 -4760 2404 70 33 0 chr1 58601692 58601993 -223591671 + AluY SINE Alu 1 311 0 2343 286 107 13 chr1 58602029 58603076 -223590588 + HERV16 LTR ERVL 330 1542 -3454 2193 117 0 16 chr1 58603078 58603394 -223590270 + AluSx SINE Alu 1 311 -1 3764 276 53 33 chr1 58603483 58603652 -223590012 + HERV16 LTR ERVL 1688 1852 -3191 2550 47 7 0 chr1 58603652 58603948 -223589716 + AluY SINE Alu 1 298 -13 3764 276 53 33 chr1 58603948 58605119 -223588545 + HERV16 LTR ERVL 1852 3118 -1925 1080 337 52 26 chr1 58605186 58605250 -223588414 + HERV16 LTR ERVL 3134 3195 -1801 2641 39 7 3 chr1 58605250 58605558 -223588106 + AluY SINE Alu 1 309 -2 1080 337 52 26 chr1 58605558 58606301 -223587363 + HERV16 LTR ERVL 3195 3780 -1216 1018 328 84 14 chr1 58606322 58606824 -223586840 + HERV16 LTR ERVL 4106 4681 -1032 475 320 45 21 chr1 58607056 58607490 -223586174 + ERVL LTR ERVL 4462 5373 -96 769 286 72 27 chr1 58607595 58607955 -223585709 + LTR16B LTR ERVL 20 443 -7 688 219 128 0 chr1 58607964 58608151 -223585513 - MIR SINE MIR -44 218 8 407 189 71 101 chr1 58608464 58608494 -223585170 + MER103 DNA DNA 2 31 -135 2234 123 0 0 chr1 58608494 58608787 -223584877 + AluSq SINE Alu 1 293 -20 407 189 71 101 chr1 58608787 58608925 -223584739 + MER103 DNA DNA 31 165 -1 2345 89 0 3 chr1 58608977 58609270 -223584394 + AluSx SINE Alu 11 302 -10 290 276 49 8 chr1 58609387 58609510 -223584154 + MIR SINE MIR 86 213 -49 2021 132 7 19 chr1 58609989 58610299 -223583365 - AluSq SINE Alu -7 306 1 345 61 30 15 chr1 58610299 58610365 -223583299 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 1875 138 3 58 chr1 58610365 58610676 -223582988 - 7SLRNA srpRNA srpRNA -22 298 5 1216 72 20 0 chr1 58610993 58611145 -223582519 + AluSg1 SINE Alu 1 155 -154 294 111 6 0 chr1 58611375 58611429 -223582235 + Alu SINE Alu 3 38 -264 1511 153 4 0 chr1 58611596 58611831 -223581833 + AluSg/x SINE Alu 77 312 0 2110 130 10 0 chr1 58611845 58612144 -223581520 + AluSx SINE Alu 1 302 -10 2093 113 0 42 chr1 58612286 58612595 -223581069 - AluSq SINE Alu -17 296 1 790 178 23 0 chr1 58612712 58612841 -223580823 + AluSq/x SINE Alu 5 136 -176 3631 142 70 7 chr1 58612865 58613484 -223580180 + L1MB7 LINE L1 5443 6100 -84 23 68 0 0 chr1 58613529 58613573 -223580091 + AT_rich Low_complexity Low_complexity 1 44 0 1784 117 169 3 chr1 58613588 58613895 -223579769 - MER46B DNA MER2_type -3 233 1 27 49 0 0 chr1 58613912 58613953 -223579711 + AT_rich Low_complexity Low_complexity 1 41 0 404 271 38 0 chr1 58614190 58614334 -223579330 - MIR SINE MIR -65 143 45 1324 139 5 10 chr1 58614481 58614689 -223578975 + MER2 DNA MER2_type 1 207 -138 270 0 0 0 chr1 58614730 58614760 -223578904 + (TG)n Simple_repeat Simple_repeat 1 30 0 205 261 0 0 chr1 58615105 58615151 -223578513 - L2 LINE L2 -17 3255 3210 346 219 99 141 chr1 58616257 58616449 -223577215 - MER5A DNA MER1_type 0 189 6 1828 107 8 0 chr1 58616459 58616702 -223576962 - AluSg SINE Alu -19 291 47 365 193 0 24 chr1 58616702 58616785 -223576879 - FLAM_A SINE Alu -19 114 34 25 0 0 0 chr1 58618855 58618880 -223574784 + GC_rich Low_complexity Low_complexity 1 25 0 196 311 179 0 chr1 58619575 58619681 -223573983 - MIR SINE MIR -133 129 5 488 279 51 42 chr1 58619769 58620006 -223573658 - MIR SINE MIR -6 256 18 1646 262 91 14 chr1 58620599 58621027 -223572637 - MLT1E LTR MaLR -132 461 1 1606 194 19 19 chr1 58621523 58621833 -223571831 + AluJo SINE Alu 2 311 -1 722 238 97 65 chr1 58622020 58622134 -223571530 + MIR SINE MIR 5 114 -148 653 205 39 0 chr1 58622134 58622261 -223571403 - FLAM_A SINE Alu -1 132 1 722 238 97 65 chr1 58622261 58622394 -223571270 + MIR SINE MIR 114 260 -2 1501 162 15 33 chr1 58622443 58622714 -223570950 + AluJb SINE Alu 24 289 -23 2042 142 0 7 chr1 58623186 58623489 -223570175 - AluJo SINE Alu -6 306 6 319 343 84 57 chr1 58623760 58624165 -223569499 - L2 LINE L2 -5 3267 2852 1869 174 13 19 chr1 58624206 58624517 -223569147 + AluJb SINE Alu 1 309 -3 2357 66 17 3 chr1 58624637 58624926 -223568738 + AluY SINE Alu 1 293 -18 1643 209 57 6 chr1 58624926 58625276 -223568388 + L1MC1 LINE L1 5966 6333 0 1832 125 91 3 chr1 58625601 58625888 -223567776 + AluSx SINE Alu 1 312 0 1184 333 118 35 chr1 58626138 58627212 -223566452 + L2 LINE L2 1777 2939 -375 2144 101 0 4 chr1 58627354 58627632 -223566032 - AluSx SINE Alu -22 290 14 2173 110 0 3 chr1 58627907 58628206 -223565458 + AluSg SINE Alu 1 298 -12 378 241 28 9 chr1 58628349 58628457 -223565207 - MIR SINE MIR -3 259 150 448 246 57 16 chr1 58628460 58628582 -223565082 + L2 LINE L2 3185 3311 -2 * 530 209 61 9 chr1 58628581 58628696 -223564968 - MIR SINE MIR -130 132 12 209 200 0 0 chr1 58628808 58628843 -223564821 + A-rich Low_complexity Low_complexity 3 37 0 22 0 0 0 chr1 58628989 58629011 -223564653 + AT_rich Low_complexity Low_complexity 1 22 0 486 287 93 52 chr1 58629078 58629548 -223564116 - L1M4 LINE L1 -338 5840 5340 302 314 25 8 chr1 58629625 58629746 -223563918 - L1M4 LINE L1 -981 5165 5043 952 131 0 0 chr1 58629875 58630012 -223563652 - AluSg/x SINE Alu -17 295 159 186 133 0 0 chr1 58630177 58630207 -223563457 + (TG)n Simple_repeat Simple_repeat 2 31 0 2451 92 0 0 chr1 58630264 58630570 -223563094 - AluSq SINE Alu -7 306 1 180 0 0 0 chr1 58630580 58630600 -223563064 + (T)n Simple_repeat Simple_repeat 1 20 0 364 282 29 19 chr1 58630667 58630770 -223562894 - L2 LINE L2 0 3313 3210 509 147 0 0 chr1 58630804 58630879 -223562785 + FLAM_A SINE Alu 24 98 -44 526 259 70 19 chr1 58630885 58631043 -223562621 + MIR SINE MIR 20 185 -77 354 249 42 27 chr1 58631106 58631353 -223562311 - L1MC/D LINE L1 -804 5342 5219 491 271 136 30 chr1 58632310 58632546 -223561118 + MIR SINE MIR 1 261 -1 232 260 82 14 chr1 58632581 58632654 -223561010 + L2 LINE L2 3186 3263 -50 339 265 26 51 chr1 58632693 58632810 -223560854 + MIR SINE MIR 85 198 -64 1584 155 0 34 chr1 58632816 58633080 -223560584 + AluJb SINE Alu 1 255 -57 255 61 0 0 chr1 58633081 58633114 -223560550 + (GGAA)n Simple_repeat Simple_repeat 2 34 0 431 184 31 10 chr1 58633639 58633737 -223559927 + L1M4 LINE L1 2455 2554 -3592 986 183 140 8 chr1 58634140 58634375 -223559289 + L1M4 LINE L1 4865 5130 -1016 894 140 7 7 chr1 58634383 58634519 -223559145 + AluSq/x SINE Alu 1 136 -176 2173 128 0 0 chr1 58634519 58634817 -223558847 + AluSx SINE Alu 1 298 -14 2107 125 7 0 chr1 58634819 58635136 -223558528 + AluSq SINE Alu 1 313 0 275 159 0 0 chr1 58635189 58635233 -223558431 + L1MB7 LINE L1 6100 6143 -41 8087 162 23 17 chr1 58635565 58637785 -223555879 - L1PA13 LINE L1 -5 6158 3951 2297 109 3 10 chr1 58637785 58638098 -223555566 - AluSx SINE Alu -1 311 1 8087 162 23 17 chr1 58638098 58638122 -223555542 - L1PA13 LINE L1 -2212 3951 3929 2398 78 7 0 chr1 58638122 58638415 -223555249 - AluSc SINE Alu -14 295 1 8087 162 23 17 chr1 58638415 58638438 -223555226 - L1PA13 LINE L1 -2234 3929 3905 222 330 47 9 chr1 58638715 58638821 -223554843 + MIR SINE MIR 83 192 -70 847 150 7 21 chr1 58639044 58639184 -223554480 - FLAM_C SINE Alu -5 138 1 6975 274 83 75 chr1 58639223 58639557 -223554107 - HERVI LTR ERV1 -2040 5745 5415 540 0 0 0 chr1 58639557 58639617 -223554047 + (TG)n Simple_repeat Simple_repeat 1 60 0 2088 92 19 0 chr1 58639618 58639889 -223553775 - AluSg SINE Alu -34 276 1 6975 274 83 75 chr1 58639889 58645184 -223548480 - HERVI LTR ERV1 -2369 5416 4 1108 179 72 17 chr1 58645184 58645419 -223548245 - LTR10B LTR ERV1 0 547 300 1547 121 50 104 chr1 58645557 58645630 -223548034 - MER4A LTR ERV1 -11 653 578 5009 84 3 14 chr1 58645630 58646151 -223547513 - LTR9 LTR ERV1 0 612 98 1766 79 0 0 chr1 58646151 58646366 -223547298 + AluSg/x SINE Alu 83 297 -13 5009 84 3 14 chr1 58646366 58646463 -223547201 - LTR9 LTR ERV1 -514 98 1 1547 121 50 104 chr1 58646463 58646687 -223546977 - MER4A LTR ERV1 -86 578 372 283 157 39 0 chr1 58646687 58646738 -223546926 - MER4A LTR ERV1 -351 313 261 604 97 43 11 chr1 58646738 58646831 -223546833 - MER4A LTR ERV1 -566 98 3 427 294 29 0 chr1 58647306 58647408 -223546256 - L1MD2 LINE L1 -260 6099 5995 1637 166 4 4 chr1 58647892 58648163 -223545501 - AluJo SINE Alu -9 303 33 1384 292 69 46 chr1 58648250 58648702 -223544962 - L1MC4 LINE L1 0 8042 7602 1619 148 95 18 chr1 58648702 58648985 -223544679 - AluJo SINE Alu -7 305 1 1384 292 69 46 chr1 58648985 58649442 -223544222 - L1MC4 LINE L1 -440 7602 7044 286 309 92 7 chr1 58649461 58649613 -223544051 - L2 LINE L2 -43 3270 3106 1879 122 106 83 chr1 58649637 58649686 -223543978 - MER61B LTR ERV1 -29 396 350 2501 53 0 3 chr1 58649686 58649985 -223543679 - AluY SINE Alu -13 298 1 1879 122 106 83 chr1 58649985 58650200 -223543464 - MER61B LTR ERV1 -75 350 118 984 148 80 6 chr1 58650200 58650362 -223543302 + L1PA8A LINE L1 5957 6130 -1 1879 122 106 83 chr1 58650362 58650482 -223543182 - MER61B LTR ERV1 -307 118 2 22 35 0 0 chr1 58650678 58650707 -223542957 + AT_rich Low_complexity Low_complexity 1 29 0 1399 112 0 0 chr1 58651053 58651232 -223542432 + AluSx SINE Alu 1 179 -133 334 256 233 64 chr1 58651529 58651748 -223541916 + MIR SINE MIR 7 262 0 225 0 0 0 chr1 58651810 58651835 -223541829 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 273 57 0 0 chr1 58651834 58651869 -223541795 + (TG)n Simple_repeat Simple_repeat 2 36 0 196 236 73 0 chr1 58652319 58652374 -223541290 - MIR SINE MIR -75 187 129 352 353 60 11 chr1 58653151 58653335 -223540329 + L2 LINE L2 2397 2589 -725 2189 115 3 0 chr1 58653424 58653719 -223539945 + AluSx SINE Alu 1 296 -16 247 357 96 13 chr1 58653807 58653964 -223539700 + L2 LINE L2 3098 3267 -5 2317 98 0 0 chr1 58654063 58654359 -223539305 + AluSg SINE Alu 1 296 -14 1056 155 0 0 chr1 58654362 58654523 -223539141 + AluJo/FRAM SINE Alu 138 298 -14 337 224 145 98 chr1 58654544 58654701 -223538963 + L1ME4a LINE L1 5625 5773 -348 2251 107 7 0 chr1 58654701 58655000 -223538664 + AluSq SINE Alu 2 302 -11 337 224 145 98 chr1 58655000 58655200 -223538464 + L1ME4a LINE L1 5773 5999 -122 552 159 91 204 chr1 58655223 58655384 -223538280 - L1MC4 LINE L1 0 8042 7864 2198 111 72 31 chr1 58655384 58655679 -223537985 - THE1C LTR MaLR 0 375 61 2418 75 0 0 chr1 58655679 58655972 -223537692 - AluSg SINE Alu -15 295 3 2198 111 72 31 chr1 58655972 58656036 -223537628 - THE1C LTR MaLR -314 61 1 552 159 91 204 chr1 58656036 58656059 -223537605 - L1MC4 LINE L1 -178 7864 7840 2221 87 21 0 chr1 58656059 58656345 -223537319 - AluSc SINE Alu -17 292 1 552 159 91 204 chr1 58656345 58656360 -223537304 - L1MC4 LINE L1 -202 7840 7825 2424 74 3 0 chr1 58656360 58656657 -223537007 - AluY SINE Alu -13 298 1 552 159 91 204 chr1 58656657 58656668 -223536996 - L1MC4 LINE L1 -217 7825 7814 1814 174 0 3 chr1 58656668 58656956 -223536708 - AluJo SINE Alu -25 287 1 552 159 91 204 chr1 58656956 58657095 -223536569 - L1MC4 LINE L1 -228 7814 7730 874 150 0 8 chr1 58657095 58657222 -223536442 + FLAM_C SINE Alu 1 126 -7 2303 106 3 0 chr1 58657230 58657531 -223536133 + AluSp SINE Alu 1 302 -11 1959 145 0 0 chr1 58657559 58657841 -223535823 + AluSx SINE Alu 1 282 -30 1427 105 0 0 chr1 58657841 58658031 -223535633 - AluSx SINE Alu -122 190 1 3853 196 83 32 chr1 58658031 58658393 -223535271 - L1MC4 LINE L1 -338 7704 7362 2497 72 0 3 chr1 58658393 58658698 -223534966 + AluY SINE Alu 1 304 -7 3853 196 83 32 chr1 58658698 58659290 -223534374 - L1MC4 LINE L1 -680 7362 6702 306 0 0 0 chr1 58659290 58659324 -223534340 + (CA)n Simple_repeat Simple_repeat 2 35 0 1161 136 22 0 chr1 58659329 58659513 -223534151 + Charlie1 DNA MER1_type 1772 1959 -802 2200 114 7 0 chr1 58659514 58659821 -223533843 + AluSx SINE Alu 1 309 -3 726 138 24 0 chr1 58659827 58659950 -223533714 + Charlie1 DNA MER1_type 2155 2280 -481 547 165 0 0 chr1 58659951 58660030 -223533634 + AluJ/FLAM SINE Alu 2 80 -232 10541 71 23 1 chr1 58660032 58661706 -223531958 - L1P3 LINE L1 -482 5672 3971 2150 120 0 0 chr1 58661706 58661998 -223531666 - AluSx SINE Alu -20 292 1 692 172 83 0 chr1 58662001 58662158 -223531506 + Charlie1 DNA MER1_type 2592 2761 0 851 220 72 0 chr1 58662161 58662370 -223531294 - L1MC4 LINE L1 -2032 5776 5553 714 300 70 92 chr1 58662912 58663867 -223529797 - L2 LINE L2 0 3272 2340 399 215 107 16 chr1 58663869 58663990 -223529674 - MIR SINE MIR -127 135 4 243 315 71 16 chr1 58664452 58664579 -223529085 + MIR3 SINE MIR 5 138 -70 702 204 32 19 chr1 58665108 58665196 -223528468 - MER63C DNA MER1_type -130 930 838 909 157 24 0 chr1 58665196 58665362 -223528302 + L1MA4 LINE L1 6125 6294 -6 702 204 32 19 chr1 58665362 58665429 -223528235 - MER63C DNA MER1_type -222 838 773 3319 146 88 122 chr1 58665429 58666031 -223527633 + Tigger6a DNA MER2_type 1 622 -975 2170 113 0 0 chr1 58666031 58666335 -223527329 + AluSx SINE Alu 1 304 0 3319 146 88 122 chr1 58666335 58666460 -223527204 + Tigger6a DNA MER2_type 622 750 -847 1604 180 3 35 chr1 58666460 58666771 -223526893 + AluJo SINE Alu 1 301 -11 3319 146 88 122 chr1 58666771 58666952 -223526712 + Tigger6a DNA MER2_type 750 880 -203 339 71 0 0 chr1 58666953 58666995 -223526669 + L1M4 LINE L1 4879 4920 -1226 1858 158 3 7 chr1 58666996 58667287 -223526377 + AluJo SINE Alu 1 290 -22 2225 118 0 7 chr1 58667305 58667601 -223526063 + AluSq SINE Alu 1 294 -19 2274 88 0 7 chr1 58667610 58667906 -223525758 + AluSc SINE Alu 1 294 -15 235 178 137 55 chr1 58667954 58668068 -223525596 - AluS SINE Alu 0 342 223 480 171 34 0 chr1 58668068 58668156 -223525508 + L1M4 LINE L1 5078 5168 -978 1754 186 84 6 chr1 58668156 58668501 -223525163 - MER63C DNA MER1_type -321 609 238 239 255 128 39 chr1 58668520 58668622 -223525042 - MIR3 SINE MIR -26 182 72 648 123 0 90 chr1 58668783 58668905 -223524759 + AluJb SINE Alu 192 302 -10 261 310 164 17 chr1 58669330 58669502 -223524162 - MIR SINE MIR -58 204 20 683 284 74 0 chr1 58669576 58669805 -223523859 - MIR SINE MIR 0 262 17 2231 101 3 25 chr1 58669909 58670227 -223523437 + AluSq SINE Alu 1 311 -2 2200 126 0 0 chr1 58670231 58670533 -223523131 + AluSx SINE Alu 1 302 -10 423 285 80 63 chr1 58670577 58670879 -223522785 - L2 LINE L2 -1 3312 3006 607 264 51 79 chr1 58670898 58671197 -223522467 - L2 LINE L2 -412 2902 2613 2000 127 58 14 chr1 58671197 58671489 -223522175 + AluSx SINE Alu 1 305 -7 607 264 51 79 chr1 58671489 58671542 -223522122 - L2 LINE L2 -701 2613 2560 459 254 49 8 chr1 58671571 58671693 -223521971 - MIR SINE MIR -33 229 103 3380 174 14 82 chr1 58671996 58672738 -223520926 - LTR8 LTR ERV1 0 691 1 546 292 13 7 chr1 58672761 58672915 -223520749 - MIR3 SINE MIR -24 184 30 2018 118 59 0 chr1 58673227 58673516 -223520148 - AluSg SINE Alu -4 306 1 263 315 62 46 chr1 58673618 58673748 -223519916 + MIR3 SINE MIR 60 191 -17 302 249 11 54 chr1 58674100 58674218 -223519446 + MIR SINE MIR 20 126 -82 834 193 0 0 chr1 58674399 58674544 -223519120 - FRAM SINE Alu -7 169 25 2135 89 4 4 chr1 58674602 58674927 -223518737 + AluY SINE Alu 1 325 0 2340 56 0 7 chr1 58674963 58675289 -223518375 + AluY SINE Alu 1 324 0 1909 104 39 0 chr1 58675705 58675964 -223517700 + AluSx SINE Alu 44 312 0 927 231 19 78 chr1 58676724 58676993 -223516671 - MIR SINE MIR -3 259 7 2113 119 0 7 chr1 58677218 58677504 -223516160 + AluSq SINE Alu 1 286 -27 198 0 0 0 chr1 58677504 58677526 -223516138 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2417 79 0 3 chr1 58678408 58678711 -223514953 + AluSp SINE Alu 1 302 -11 1310 135 37 37 chr1 58678725 58678940 -223514724 + AluJo SINE Alu 85 299 -13 789 123 23 31 chr1 58679272 58679402 -223514262 + FLAM_A SINE Alu 1 129 -4 243 0 0 0 chr1 58679421 58679448 -223514216 + (GA)n Simple_repeat Simple_repeat 2 28 0 253 268 110 39 chr1 58679605 58679732 -223513932 - L2 LINE L2 0 3313 3178 331 280 126 28 chr1 58679738 58679881 -223513783 + MIR SINE MIR 29 185 -77 180 0 0 0 chr1 58679927 58679947 -223513717 + (TTA)n Simple_repeat Simple_repeat 1 20 0 314 269 50 34 chr1 58679990 58680109 -223513555 - L2 LINE L2 -237 3035 2915 919 157 0 0 chr1 58680406 58680540 -223513124 + AluJo SINE Alu 1 134 -178 300 234 48 8 chr1 58680733 58680843 -223512821 + MIR SINE MIR 84 203 -59 720 306 38 52 chr1 58681116 58681459 -223512205 + LTR16A LTR ERVL 113 450 0 220 319 0 14 chr1 58681676 58681745 -223511919 - L2 LINE L2 0 3272 3205 645 161 0 0 chr1 58681959 58682052 -223511612 + AluSg/x SINE Alu 84 176 -134 947 158 14 0 chr1 58682054 58682200 -223511464 + AluSg/x SINE Alu 144 291 -21 2213 100 14 3 chr1 58682202 58682493 -223511171 + AluSg SINE Alu 1 294 -16 2436 88 0 0 chr1 58682495 58682802 -223510862 + AluSg SINE Alu 1 307 -3 2431 14 0 22 chr1 58682824 58683100 -223510564 + L1PA4 LINE L1 5886 6155 0 2128 95 0 0 chr1 58683216 58683489 -223510175 + AluSx SINE Alu 1 273 -39 2136 129 3 0 chr1 58683509 58683812 -223509852 + AluSx SINE Alu 1 304 -8 930 155 11 75 chr1 58683942 58684129 -223509535 + FAM SINE Alu 1 175 0 264 221 0 52 chr1 58684129 58684206 -223509458 + GA-rich Low_complexity Low_complexity 5 77 0 1847 149 3 26 chr1 58684372 58684674 -223508990 - AluSx SINE Alu -17 295 1 2290 96 13 0 chr1 58684885 58685186 -223508478 + AluSp SINE Alu 1 305 -8 461 264 136 13 chr1 58685366 58685521 -223508143 + MIR SINE MIR 1 174 -88 603 240 14 83 chr1 58685584 58685842 -223507822 - MER46C DNA MER2_type 0 338 1 1519 154 52 66 chr1 58685905 58686040 -223507624 + AluJo SINE Alu 2 137 -165 1568 98 5 23 chr1 58686040 58686202 -223507462 - AluSc SINE Alu -16 293 134 2148 104 0 13 chr1 58686202 58686500 -223507164 - AluSg SINE Alu -16 294 1 1568 98 5 23 chr1 58686500 58686552 -223507112 - AluSc SINE Alu -175 134 83 1519 154 52 66 chr1 58686552 58686702 -223506962 + AluJo SINE Alu 137 283 -19 300 167 17 17 chr1 58686712 58686772 -223506892 + LTR16A1 LTR ERVL 92 151 -306 428 251 269 0 chr1 58686835 58687006 -223506658 + LTR16A1 LTR ERVL 241 457 0 2338 297 92 38 chr1 58687007 58687307 -223506357 + HERV16 LTR ERVL 2 284 -4945 1962 151 3 19 chr1 58687307 58687619 -223506045 + AluJo SINE Alu 1 307 -5 2338 297 92 38 chr1 58687619 58687634 -223506030 + HERV16 LTR ERVL 284 297 -4932 2330 109 0 3 chr1 58687634 58687946 -223505718 + AluY SINE Alu 1 311 0 2338 297 92 38 chr1 58687946 58689017 -223504647 + HERV16 LTR ERVL 297 1584 -3645 1808 96 30 15 chr1 58689135 58689405 -223504259 + L1MB2 LINE L1 5894 6167 -4 23 0 0 0 chr1 58689405 58689428 -223504236 + AT_rich Low_complexity Low_complexity 1 23 0 1500 162 70 7 chr1 58689437 58689708 -223503956 + AluJb SINE Alu 5 292 -20 4403 86 40 19 chr1 58689708 58689870 -223503794 - L1MA3 LINE L1 -9 6296 6139 1892 130 10 29 chr1 58689870 58690178 -223503486 - AluSx SINE Alu -10 302 1 4403 86 40 19 chr1 58690178 58690635 -223503029 - L1MA3 LINE L1 -166 6139 5664 2194 270 47 11 chr1 58690711 58691285 -223502379 + HERV16 LTR ERVL 1743 2337 -2659 2010 127 3 13 chr1 58691288 58691596 -223502068 + AluSx SINE Alu 1 305 -7 1786 91 0 0 chr1 58691663 58691884 -223501780 - AluSx SINE Alu -91 221 1 1694 171 0 18 chr1 58692800 58693075 -223500589 + AluJb SINE Alu 12 281 -31 429 20 0 0 chr1 58693080 58693130 -223500534 + (CA)n Simple_repeat Simple_repeat 2 51 0 4757 145 74 39 chr1 58693131 58693351 -223500313 - L1MB3 LINE L1 -19 6164 5953 3660 134 11 21 chr1 58693351 58693882 -223499782 + MER1A DNA MER1_type 1 526 -1 4757 145 74 39 chr1 58693882 58694477 -223499187 - L1MB3 LINE L1 -230 5953 5380 1737 190 0 19 chr1 58694477 58694793 -223498871 - AluJb SINE Alu -2 310 1 4757 145 74 39 chr1 58694793 58694910 -223498754 - L1MB3 LINE L1 -803 5380 5269 1303 165 34 121 chr1 58694910 58695232 -223498432 - AluJo SINE Alu -18 294 1 4757 145 74 39 chr1 58695232 58695378 -223498286 - L1MB3 LINE L1 -914 5269 5036 2132 118 3 7 chr1 58695378 58695683 -223497981 - AluSx SINE Alu -8 304 1 1430 135 13 83 chr1 58695687 58695999 -223497665 - AluJb SINE Alu -22 290 1 2478 58 6 13 chr1 58696001 58696314 -223497350 - AluY SINE Alu 0 311 1 905 145 0 0 chr1 58696314 58696445 -223497219 - AluY SINE Alu -178 133 3 419 297 0 8 chr1 58696465 58696583 -223497081 + L1ME LINE L1 5533 5649 -472 2279 87 0 10 chr1 58696586 58696885 -223496779 + AluSq SINE Alu 1 296 -17 229 200 0 0 chr1 58696911 58696966 -223496698 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 2167 104 10 10 chr1 58696967 58697276 -223496388 - AluSg SINE Alu -1 309 1 1608 128 37 77 chr1 58697288 58697586 -223496078 - AluJb SINE Alu -26 286 1 1989 186 69 126 chr1 58697594 58697634 -223496030 - L1MB3 LINE L1 -1118 5028 4987 2180 108 0 0 chr1 58697634 58697922 -223495742 - AluSx SINE Alu -24 288 1 1989 186 69 126 chr1 58697922 58698133 -223495531 - L1MB3 LINE L1 -1159 4987 4765 620 67 11 56 chr1 58698133 58698153 -223495511 - AluY SINE Alu -225 86 67 2045 79 0 11 chr1 58698153 58698419 -223495245 - AluSc SINE Alu -12 297 35 620 67 11 56 chr1 58698419 58698487 -223495177 - AluY SINE Alu -244 67 2 1989 186 69 126 chr1 58698487 58698909 -223494755 - L1MB3 LINE L1 -1381 4765 4326 2004 116 25 7 chr1 58698909 58699194 -223494470 + AluSg SINE Alu 1 290 -20 1989 186 69 126 chr1 58699194 58699248 -223494416 - L1MB3 LINE L1 -1820 4326 4270 2350 74 0 35 chr1 58699249 58699559 -223494105 - AluY SINE Alu -12 299 1 2306 105 0 3 chr1 58699559 58699865 -223493799 - AluSq SINE Alu -8 305 1 1774 144 39 14 chr1 58699875 58700160 -223493504 - AluSx SINE Alu -20 292 1 268 303 96 62 chr1 58700631 58700758 -223492906 + MIR SINE MIR 13 149 -113 1933 118 52 7 chr1 58700758 58701047 -223492617 + AluSx SINE Alu 1 302 -10 268 303 96 62 chr1 58701047 58701097 -223492567 + MIR SINE MIR 149 196 -66 204 212 76 45 chr1 58701522 58701588 -223492076 - MIR3 SINE MIR -31 177 110 186 43 0 0 chr1 58702082 58702105 -223491559 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr1 58702270 58702307 -223491357 + AT_rich Low_complexity Low_complexity 1 37 0 450 282 106 48 chr1 58702685 58702741 -223490923 - MIR3 SINE MIR -7 201 150 1592 176 59 0 chr1 58702741 58703030 -223490634 + AluSq SINE Alu 1 306 -7 450 282 106 48 chr1 58703030 58703161 -223490503 - MIR3 SINE MIR -58 150 3 434 200 27 9 chr1 58704399 58704509 -223489155 + L1MC4 LINE L1 7742 7853 -189 1814 174 0 3 chr1 58704527 58704815 -223488849 + AluJo SINE Alu 1 287 -25 2287 93 0 0 chr1 58704826 58705115 -223488549 + AluY SINE Alu 1 289 -22 1184 333 118 35 chr1 58705257 58706331 -223487333 - L2 LINE L2 -375 2939 1777 1785 129 91 3 chr1 58706580 58706866 -223486798 - AluSx SINE Alu -1 311 1 6067 187 32 18 chr1 58707191 58707541 -223486123 - L1MC1 LINE L1 0 6613 6269 2258 76 17 10 chr1 58707541 58707832 -223485832 - AluY SINE Alu -18 293 1 6067 187 32 18 chr1 58707832 58708639 -223485025 - L1MC1 LINE L1 -344 6269 5474 2052 158 0 6 chr1 58708639 58708950 -223484714 - AluJb SINE Alu -3 309 1 6067 187 32 18 chr1 58708950 58709825 -223483839 - L1MC1 LINE L1 -1139 5474 4552 2261 105 3 7 chr1 58709844 58710148 -223483516 - AluSx SINE Alu -9 303 1 351 232 0 0 chr1 58710150 58710232 -223483432 - L1MC1 LINE L1 -4072 2535 2454 2301 113 0 0 chr1 58710252 58710553 -223483111 - AluSx SINE Alu -11 301 1 577 195 35 53 chr1 58710573 58710742 -223482922 - L1MC1 LINE L1 -4762 1664 1499 2100 140 0 3 chr1 58710742 58711050 -223482614 - AluSx SINE Alu -5 307 1 341 225 0 0 chr1 58711052 58711132 -223482532 - L1MEc LINE L1 -4072 2535 2456 2305 108 0 0 chr1 58711158 58711455 -223482209 - AluSx SINE Alu -15 297 1 8100 140 77 36 chr1 58711475 58711644 -223482020 - L1MEc LINE L1 -4762 1664 1503 1944 135 0 3 chr1 58711644 58711932 -223481732 - AluSx SINE Alu -5 307 21 8100 140 77 36 chr1 58711932 58712209 -223481455 - L1MEc LINE L1 -4923 1503 1239 198 0 0 0 chr1 58712209 58712231 -223481433 + (TTA)n Simple_repeat Simple_repeat 2 23 0 8100 140 77 36 chr1 58712231 58712923 -223480741 - L1MEc LINE L1 -5187 1239 577 2221 108 0 3 chr1 58712923 58713218 -223480446 + AluSx SINE Alu 11 304 -8 8100 140 77 36 chr1 58713218 58713537 -223480127 - L1MEc LINE L1 -5849 577 273 1668 192 3 7 chr1 58713537 58713844 -223479820 - AluJb SINE Alu -6 306 1 1589 161 34 37 chr1 58713844 58714141 -223479523 - AluJo SINE Alu -15 297 1 8100 140 77 36 chr1 58714141 58714260 -223479404 - L1MEc LINE L1 -6152 274 19 1979 108 11 18 chr1 58714992 58715319 -223478345 - AluSx SINE Alu 0 325 1 392 265 0 0 chr1 58715329 58715412 -223478252 + MLT2B1 LTR ERVL 380 462 -58 866 176 20 0 chr1 58715470 58715618 -223478046 - MLT2B1 LTR ERVL -369 151 1 341 306 117 11 chr1 58716325 58716505 -223477159 - MIR SINE MIR 0 262 64 828 153 0 0 chr1 58716508 58716632 -223477032 + FLAM_C SINE Alu 1 124 -19 25 0 0 0 chr1 58716632 58716657 -223477007 + AT_rich Low_complexity Low_complexity 1 25 0 2149 86 3 95 chr1 58716966 58717302 -223476362 - AluSp SINE Alu -8 305 1 331 355 49 65 chr1 58717469 58717793 -223475871 - L2 LINE L2 -22 3250 2932 2219 127 30 0 chr1 58717801 58718139 -223475525 - L1MB7 LINE L1 -9 6175 5828 623 302 74 54 chr1 58718223 58718670 -223474994 - L2 LINE L2 -458 2856 2401 767 246 233 67 chr1 58719032 58719134 -223474530 - MLT1G1 LTR MaLR -28 539 455 2154 114 0 0 chr1 58719134 58719423 -223474241 - AluSx SINE Alu -23 289 1 767 246 233 67 chr1 58719423 58719740 -223473924 - MLT1G1 LTR MaLR -112 455 51 362 178 55 0 chr1 58719806 58719879 -223473785 - MLT1G1 LTR MaLR -516 79 3 192 317 125 10 chr1 58719903 58720007 -223473657 - L2 LINE L2 -904 2410 2295 742 179 0 57 chr1 58720019 58720159 -223473505 + FLAM_A SINE Alu 1 132 -1 1979 149 3 7 chr1 58720606 58720914 -223472750 - AluJb SINE Alu -5 307 1 204 388 49 27 chr1 58720915 58721098 -223472566 - L2 LINE L2 -601 2713 2527 221 336 76 0 chr1 58721141 58721260 -223472404 - L2 LINE L2 0 3313 3186 2209 99 3 3 chr1 58721837 58722129 -223471535 + AluSx SINE Alu 1 292 -20 376 245 99 33 chr1 58722449 58722600 -223471064 + HAL1 LINE L1 398 558 -1949 2079 149 0 0 chr1 58722613 58722922 -223470742 + AluSx SINE Alu 1 309 -3 272 266 44 35 chr1 58722931 58723044 -223470620 - L2 LINE L2 -2102 1212 1099 1807 197 159 22 chr1 58723091 58723538 -223470126 - MLT2B1 LTR ERVL -10 510 3 202 244 0 0 chr1 58723650 58723695 -223469969 + T-rich Low_complexity Low_complexity 2 46 0 21 57 0 0 chr1 58725301 58725336 -223468328 + AT_rich Low_complexity Low_complexity 1 35 0 1340 211 23 4 chr1 58725475 58725751 -223467913 - LTR10B LTR ERV1 0 547 300 9756 267 70 62 chr1 58725875 58728212 -223465452 - HERVI LTR ERV1 0 7152 4834 486 0 0 0 chr1 58728212 58728266 -223465398 + (TG)n Simple_repeat Simple_repeat 1 54 0 1915 112 19 0 chr1 58728267 58728534 -223465130 - AluSg SINE Alu -34 276 5 9756 267 70 62 chr1 58728534 58733833 -223459831 - HERVI LTR ERV1 -2317 4835 4 1108 179 72 17 chr1 58733833 58734068 -223459596 - LTR10B LTR ERV1 0 547 300 1547 121 50 104 chr1 58734206 58734279 -223459385 - MER4A LTR ERV1 -11 653 578 5009 84 3 14 chr1 58734279 58734800 -223458864 - LTR9 LTR ERV1 0 612 98 1766 79 0 0 chr1 58734800 58735015 -223458649 + AluSg/x SINE Alu 83 297 -13 5009 84 3 14 chr1 58735015 58735112 -223458552 - LTR9 LTR ERV1 -514 98 1 1547 121 50 104 chr1 58735112 58735336 -223458328 - MER4A LTR ERV1 -86 578 372 283 157 39 0 chr1 58735336 58735387 -223458277 - MER4A LTR ERV1 -351 313 261 604 97 43 11 chr1 58735387 58735480 -223458184 - MER4A LTR ERV1 -566 98 3 427 294 29 0 chr1 58735952 58736054 -223457610 - L1MD2 LINE L1 -260 6099 5995 1637 166 4 4 chr1 58736538 58736809 -223456855 - AluJo SINE Alu -9 303 33 1412 291 69 46 chr1 58736896 58737348 -223456316 - L1MC4 LINE L1 0 8042 7602 1611 149 96 18 chr1 58737348 58737630 -223456034 - AluJo SINE Alu -8 304 1 1412 291 69 46 chr1 58737630 58738087 -223455577 - L1MC4 LINE L1 -440 7602 7044 286 309 92 7 chr1 58738106 58738258 -223455406 - L2 LINE L2 -43 3270 3106 295 140 0 20 chr1 58738282 58738332 -223455332 - MER61B LTR ERV1 -29 396 348 2554 43 0 3 chr1 58738332 58738631 -223455033 - AluY SINE Alu -13 298 1 227 280 67 93 chr1 58739910 58740135 -223453529 + L1ME LINE L1 5697 5915 -206 348 336 0 0 chr1 58740531 58740644 -223453020 - L2 LINE L2 -541 2773 2661 1783 177 53 43 chr1 58740679 58741088 -223452576 + L1ME2 LINE L1 5765 6334 0 397 308 104 67 chr1 58741088 58741474 -223452190 - L2 LINE L2 -692 2622 2223 2460 58 0 0 chr1 58741622 58741913 -223451751 - AluY SINE Alu -16 295 5 513 267 24 36 chr1 58742173 58742338 -223451326 - MIR3 SINE MIR 0 208 46 1089 219 9 9 chr1 58742531 58742764 -223450900 + Charlie3 DNA MER1_type 3 235 -2475 2060 120 0 10 chr1 58742917 58743208 -223450456 - AluSq SINE Alu -25 288 1 258 236 36 0 chr1 58743217 58743272 -223450392 + MIR SINE MIR 91 147 -61 2368 101 7 0 chr1 58743730 58744037 -223449627 + AluSq SINE Alu 1 309 -4 25 0 0 0 chr1 58744400 58744425 -223449239 + AT_rich Low_complexity Low_complexity 1 25 0 527 246 72 14 chr1 58744749 58744887 -223448777 - MIR SINE MIR -113 149 4 1638 153 51 0 chr1 58745089 58745363 -223448301 - AluSx SINE Alu -24 288 1 1276 165 9 14 chr1 58745544 58745756 -223447908 + AluJb SINE Alu 85 295 -17 846 149 30 42 chr1 58747397 58747599 -223446065 + MER6 DNA MER2_type -65 865 0 206 360 163 14 chr1 58747738 58747885 -223445779 - L2 LINE L2 0 3272 3104 340 214 79 57 chr1 58748306 58748446 -223445218 - L1MC5 LINE L1 -36 7925 7783 385 250 118 68 chr1 58748474 58748694 -223444970 - L1ME2 LINE L1 -1 6163 5933 26 50 0 0 chr1 58751484 58751524 -223442140 + AT_rich Low_complexity Low_complexity 1 40 0 218 319 181 29 chr1 58751810 58751948 -223441716 + MIR SINE MIR 34 192 -70 415 266 244 42 chr1 58752159 58752471 -223441193 - MLT1L LTR MaLR -207 408 34 838 236 37 25 chr1 58752474 58752715 -223440949 + L1MA9 LINE L1 6039 6282 -30 192 329 29 0 chr1 58753447 58753517 -223440147 - L2 LINE L2 -11 3261 3190 1999 130 17 7 chr1 58753544 58753844 -223439820 - AluSx SINE Alu -7 305 3 384 231 83 77 chr1 58753852 58754021 -223439643 + L2 LINE L2 3143 3312 -1 378 263 150 8 chr1 58754500 58754633 -223439031 + L2 LINE L2 3121 3272 0 393 319 130 26 chr1 58754649 58755034 -223438630 - L2 LINE L2 0 3313 2889 209 287 109 69 chr1 58755041 58755158 -223438506 - L2 LINE L2 -352 2962 2834 555 157 291 22 chr1 58755158 58755292 -223438372 + FAM SINE Alu 3 172 -3 209 287 109 69 chr1 58755292 58755348 -223438316 - L2 LINE L2 -480 2834 2782 932 300 228 13 chr1 58755358 58756114 -223437550 - L2 LINE L2 -1108 2206 1289 2102 123 0 20 chr1 58756390 58756692 -223436972 + AluSx SINE Alu 1 296 -16 209 194 0 0 chr1 58756760 58756796 -223436868 + A-rich Low_complexity Low_complexity 3 38 0 866 223 49 36 chr1 58756944 58757168 -223436496 - MIR SINE MIR -7 255 29 213 283 87 0 chr1 58757195 58757287 -223436377 - MIR SINE MIR -43 219 120 1918 148 0 13 chr1 58757441 58757744 -223435920 - AluJb SINE Alu -13 299 1 1537 159 41 48 chr1 58758022 58758213 -223435451 - AluJb SINE Alu 0 312 122 2395 91 0 13 chr1 58758213 58758522 -223435142 - AluSq SINE Alu -8 305 1 1537 159 41 48 chr1 58758522 58758644 -223435020 - AluJb SINE Alu -190 122 1 1160 171 180 26 chr1 58758889 58759014 -223434650 - L1MB4 LINE L1 0 6180 6076 2403 84 3 0 chr1 58759014 58759311 -223434353 - AluSq SINE Alu -15 298 1 1160 171 180 26 chr1 58759311 58759490 -223434174 - L1MB4 LINE L1 -104 6076 5829 1958 204 39 75 chr1 58759564 58760097 -223433567 - MLT2B3 LTR ERVL -40 514 1 1972 167 12 3 chr1 58760097 58760433 -223433231 - L1MB4 LINE L1 -341 5842 5504 1865 157 138 24 chr1 58760433 58760810 -223432854 + MSTA LTR MaLR 9 428 0 7712 200 40 29 chr1 58760810 58762229 -223431435 - L1MB4 LINE L1 -674 5506 4105 1695 179 3 10 chr1 58762229 58762526 -223431138 - AluJo SINE Alu -17 295 1 351 44 0 0 chr1 58762534 58762579 -223431085 + (TTG)n Simple_repeat Simple_repeat 2 46 0 1745 95 0 0 chr1 58762581 58762802 -223430862 - AluSg/x SINE Alu -7 303 83 7712 200 40 29 chr1 58762802 58763471 -223430193 - L1MB4 LINE L1 -2081 4099 3383 239 0 32 0 chr1 58763815 58763846 -223429818 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2127 130 3 0 chr1 58763864 58764172 -223429492 - AluY SINE Alu -2 309 1 661 107 0 0 chr1 58764657 58764741 -223428923 + AluJ/FLAM SINE Alu 3 86 -226 960 99 92 20 chr1 58764741 58764893 -223428771 + AluJo/FRAM SINE Alu 136 298 -14 24 0 0 0 chr1 58765123 58765147 -223428517 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr1 58766008 58766052 -223427612 + AT_rich Low_complexity Low_complexity 1 44 0 825 155 0 8 chr1 58766130 58766259 -223427405 + FLAM_C SINE Alu 1 128 -5 884 164 0 0 chr1 58766408 58766542 -223427122 + AluJo SINE Alu 1 134 -178 1670 170 38 3 chr1 58766542 58766830 -223426834 + AluJb SINE Alu 1 298 -14 2255 80 10 7 chr1 58767025 58767325 -223426339 + AluSp SINE Alu 1 301 -12 1584 167 151 0 chr1 58767334 58767586 -223426078 + AluSx SINE Alu 1 290 -12 280 111 0 0 chr1 58767623 58767668 -223425996 + (TTTTC)n Simple_repeat Simple_repeat 5 49 0 2209 116 0 10 chr1 58767668 58768090 -223425574 - AluSg SINE Alu 0 419 1 1440 132 9 26 chr1 58768091 58768318 -223425346 - AluSq SINE Alu -7 306 84 443 304 83 18 chr1 58768930 58769098 -223424566 - MIR SINE MIR -7 255 77 199 259 47 24 chr1 58769776 58769861 -223423803 - MIR3 SINE MIR -4 204 118 202 244 0 0 chr1 58770138 58770183 -223423481 + A-rich Low_complexity Low_complexity 2 46 0 1921 184 170 24 chr1 58770295 58770747 -223422917 + MLT2B1 LTR ERVL 3 520 0 428 238 0 48 chr1 58770787 58770913 -223422751 + L2 LINE L2 1099 1218 -2096 2031 139 0 0 chr1 58770914 58771226 -223422438 - AluSx SINE Alu 0 312 1 376 245 99 33 chr1 58771239 58771390 -223422274 - HAL1 LINE L1 -1949 558 398 330 231 0 13 chr1 58771698 58771710 -223421954 - L1MCa LINE L1 -3918 2535 2524 2168 110 3 3 chr1 58771710 58772002 -223421662 - AluSx SINE Alu -20 292 1 330 231 0 13 chr1 58772002 58772085 -223421579 - L1MCa LINE L1 -3929 2524 2416 2305 108 0 0 chr1 58772111 58772408 -223421256 - AluSx SINE Alu -15 297 1 8033 138 81 37 chr1 58772428 58772597 -223421067 - L1MCa LINE L1 -4762 1664 1504 1961 132 0 3 chr1 58772597 58772885 -223420779 - AluSx SINE Alu -5 307 21 8033 138 81 37 chr1 58772885 58773156 -223420508 - L1MCa LINE L1 -4922 1504 1246 198 0 0 0 chr1 58773156 58773178 -223420486 + (TTA)n Simple_repeat Simple_repeat 2 23 0 8033 138 81 37 chr1 58773178 58773871 -223419793 - L1MCa LINE L1 -5180 1246 585 2221 108 0 3 chr1 58773871 58774166 -223419498 + AluSx SINE Alu 11 304 -8 8033 138 81 37 chr1 58774166 58774485 -223419179 - L1MCa LINE L1 -5841 585 282 1668 192 3 7 chr1 58774485 58774792 -223418872 - AluJb SINE Alu -6 306 1 1589 161 34 37 chr1 58774792 58775089 -223418575 - AluJo SINE Alu -15 297 1 8033 138 81 37 chr1 58775089 58775208 -223418456 - L1MCa LINE L1 -6143 283 19 312 27 0 0 chr1 58775952 58775989 -223417675 + (G)n Simple_repeat Simple_repeat 1 37 0 2003 112 32 4 chr1 58776313 58776619 -223417045 - AluSq SINE Alu 0 314 1 271 290 131 9 chr1 58776669 58776776 -223416888 - L2 LINE L2 -12 3301 3182 507 235 76 30 chr1 58776944 58777137 -223416527 + MER20B DNA MER1_type 15 219 0 1427 182 69 77 chr1 58777583 58777974 -223415690 - MLT1B LTR MaLR 0 390 3 26 88 0 0 chr1 58777981 58778049 -223415615 + AT_rich Low_complexity Low_complexity 1 68 0 1963 133 0 29 chr1 58778098 58778406 -223415258 + AluSx SINE Alu 1 299 -13 542 281 127 28 chr1 58778466 58778823 -223414841 - L1MC4a LINE L1 -321 5800 5456 2290 108 0 0 chr1 58779126 58779421 -223414243 + AluSx SINE Alu 1 295 -17 864 231 12 0 chr1 58779820 58779993 -223413671 - FAM SINE Alu 0 175 1 418 342 42 0 chr1 58780036 58780156 -223413508 + L2 LINE L2 3148 3272 0 496 360 71 22 chr1 58780163 58780485 -223413179 - L2 LINE L2 -530 2784 2447 194 304 141 0 chr1 58780513 58780605 -223413059 + MIR SINE MIR 3 107 -155 1151 179 37 5 chr1 58780605 58780895 -223412769 - MLT1A1 LTR MaLR 0 365 28 198 170 128 0 chr1 58780937 58780984 -223412680 + MIR SINE MIR 162 214 -48 236 258 30 0 chr1 58781000 58781066 -223412598 + MIR SINE MIR 84 151 -111 2245 110 0 22 chr1 58781381 58781699 -223411965 + AluSx SINE Alu 1 311 -1 2351 89 3 7 chr1 58784684 58784988 -223408676 - AluY SINE Alu -8 303 1 252 0 0 0 chr1 58784997 58785025 -223408639 + (A)n Simple_repeat Simple_repeat 1 28 0 22 56 0 0 chr1 58786860 58786896 -223406768 + AT_rich Low_complexity Low_complexity 1 36 0 547 155 0 0 chr1 58787623 58787720 -223405944 - L1MC1 LINE L1 -114 6219 6123 2158 100 21 3 chr1 58787726 58788016 -223405648 - AluSq SINE Alu -14 299 5 22 56 0 0 chr1 58788071 58788107 -223405557 + AT_rich Low_complexity Low_complexity 1 36 0 922 172 0 29 chr1 58788364 58788538 -223405126 - AluJb SINE Alu 0 312 144 946 211 69 103 chr1 58788540 58788853 -223404811 - L1MC4 LINE L1 -2 8040 7758 2283 64 0 4 chr1 58788853 58789154 -223404510 - AluY SINE Alu 0 300 1 946 211 69 103 chr1 58789154 58789488 -223404176 - L1MC4 LINE L1 -284 7758 7414 1296 161 5 0 chr1 58789498 58789691 -223403973 + AluJo SINE Alu 1 194 -118 218 219 0 62 chr1 58789773 58789837 -223403827 + L3 LINE CR1 1317 1376 -201 21 36 0 0 chr1 58789931 58789959 -223403705 + AT_rich Low_complexity Low_complexity 1 28 0 259 191 0 0 chr1 58789960 58790002 -223403662 + L2 LINE L2 3213 3254 -18 991 69 0 0 chr1 58790014 58790145 -223403519 - L1PA8 LINE L1 0 6172 6042 313 333 9 29 chr1 58790145 58790250 -223403414 + L3 LINE CR1 1431 1533 -44 2046 115 10 3 chr1 58790418 58790728 -223402936 - AluSq SINE Alu 0 312 1 1367 188 50 63 chr1 58790889 58791264 -223402400 - L1ME3 LINE L1 -87 6075 5704 1999 128 49 0 chr1 58791264 58791552 -223402112 - AluSx SINE Alu -10 302 1 1367 188 50 63 chr1 58791552 58791574 -223402090 - L1ME3 LINE L1 -458 5704 5683 2341 92 3 10 chr1 58791592 58791897 -223401767 - AluSq SINE Alu -10 303 1 2226 93 35 0 chr1 58792139 58792429 -223401235 + AluSg SINE Alu 1 300 -10 556 104 26 52 chr1 58792502 58792617 -223401047 - L1MB4 LINE L1 0 6180 6069 818 157 0 0 chr1 58793688 58793822 -223399842 - L1PA16 LINE L1 -9 6157 6024 203 0 0 36 chr1 58793822 58793850 -223399814 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2612 97 0 0 chr1 58793861 58794233 -223399431 - L1P4 LINE L1 -393 5773 5402 317 333 36 12 chr1 58794306 58794474 -223399190 + L2 LINE L2 2602 2773 -541 2324 109 0 0 chr1 58794494 58794796 -223398868 - AluSc SINE Alu -7 302 1 459 325 31 59 chr1 58794952 58795207 -223398457 + MIR SINE MIR 5 252 -10 182 308 67 58 chr1 58795220 58795324 -223398340 + L2 LINE L2 2948 3052 -220 199 329 0 14 chr1 58795473 58795543 -223398121 + L2 LINE L2 3188 3256 -16 320 200 63 63 chr1 58796855 58796950 -223396714 + MER94 DNA DNA 2 96 -38 24 0 0 0 chr1 58797210 58797234 -223396430 + AT_rich Low_complexity Low_complexity 1 24 0 2369 66 0 41 chr1 58797310 58797629 -223396035 - AluY SINE Alu -5 306 1 1845 153 0 17 chr1 58798066 58798354 -223395310 - AluSx SINE Alu -24 288 6 1766 180 0 10 chr1 58798685 58798985 -223394679 + AluJb SINE Alu 1 297 -15 31 26 0 0 chr1 58799408 58799446 -223394218 + AT_rich Low_complexity Low_complexity 1 38 0 2548 58 0 3 chr1 58799711 58800023 -223393641 - AluY SINE Alu 0 311 1 372 315 49 72 chr1 58801222 58801527 -223392137 + L1ME4a LINE L1 5618 5915 -206 358 336 0 0 chr1 58801923 58802036 -223391628 - L2 LINE L2 -541 2773 2661 1602 175 53 43 chr1 58802071 58802478 -223391186 + L1ME2 LINE L1 5765 6332 -2 422 308 104 67 chr1 58802480 58802866 -223390798 - L2 LINE L2 -692 2622 2223 2473 58 0 0 chr1 58803014 58803308 -223390356 - AluY SINE Alu -16 295 2 528 267 24 36 chr1 58803565 58803730 -223389934 - MIR3 SINE MIR 0 208 46 3764 109 8 6 chr1 58803923 58804447 -223389217 + MER1A DNA MER1_type 3 527 0 2342 94 0 3 chr1 58804463 58804762 -223388902 + AluSq SINE Alu 1 298 -15 187 371 92 46 chr1 58805384 58805667 -223387997 + L2 LINE L2 2804 3099 -173 1844 122 0 74 chr1 58805686 58805997 -223387667 - AluSx SINE Alu -18 294 7 704 188 2 7 chr1 58806030 58806175 -223387489 + MSTC LTR MaLR 1 148 -217 1423 189 0 31 chr1 58806203 58806463 -223387201 + AluJo SINE Alu 37 288 -24 600 327 35 39 chr1 58806622 58806882 -223386782 - MIR SINE MIR -3 259 1 711 170 7 46 chr1 58806902 58807055 -223386609 - FRAM SINE Alu -30 146 1 2210 120 0 16 chr1 58807229 58807546 -223386118 + AluSx SINE Alu 1 312 0 281 284 24 94 chr1 58807797 58807924 -223385740 + MIR SINE MIR 27 144 -64 1146 182 185 76 chr1 58808644 58809001 -223384663 - MSTD LTR MaLR 0 396 1 484 317 76 28 chr1 58809389 58809638 -223384026 - MIR SINE MIR 0 262 2 2207 99 0 26 chr1 58810200 58810503 -223383161 + AluSx SINE Alu 15 309 -3 2044 158 0 19 chr1 58810589 58810905 -223382759 + AluSx SINE Alu 3 312 0 2426 82 10 0 chr1 58811056 58811359 -223382305 - AluSg SINE Alu -4 306 1 2425 69 7 3 chr1 58811687 58811993 -223381671 + AluY SINE Alu 1 307 -4 567 250 41 47 chr1 58812817 58812989 -223380675 + MIR SINE MIR 35 205 -57 1807 120 56 28 chr1 58813511 58813795 -223379869 + AluSx SINE Alu 1 292 -20 252 0 0 0 chr1 58813930 58813958 -223379706 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1499 151 32 42 chr1 58813960 58814245 -223379419 - AluJo SINE Alu -30 282 1 245 210 0 0 chr1 58814698 58814760 -223378904 - L1MC4 LINE L1 -1340 6702 6641 199 250 54 36 chr1 58814848 58814904 -223378760 + MIR SINE MIR 158 214 -48 1630 170 44 0 chr1 58815391 58815688 -223377976 - AluSx SINE Alu 0 309 1 2158 120 17 3 chr1 58815821 58816121 -223377543 - AluSx SINE Alu -8 304 1 300 302 39 16 chr1 58816122 58816251 -223377413 - L1M4 LINE L1 -6394 712 581 1821 123 35 0 chr1 58816302 58816563 -223377101 - AluSx SINE Alu -9 303 34 6112 159 45 11 chr1 58816563 58817405 -223376259 - L1 LINE L1 -814 5332 4428 2211 83 3 0 chr1 58817405 58817693 -223375971 - AluY SINE Alu -22 289 1 6112 159 45 11 chr1 58817693 58818150 -223375514 - L1 LINE L1 -1718 4428 3988 1094 291 113 33 chr1 58818204 58818863 -223374801 - L1M4 LINE L1 -6152 1057 160 2032 131 3 3 chr1 58818895 58819185 -223374479 + AluSg SINE Alu 1 290 -20 1497 237 113 73 chr1 58819194 58819441 -223374223 - L1MEc LINE L1 -4576 1820 1584 2225 128 0 0 chr1 58819441 58819745 -223373919 - AluSx SINE Alu -8 304 1 1497 237 113 73 chr1 58819745 58819877 -223373787 - L1MEc LINE L1 -4812 1584 1459 1891 174 0 6 chr1 58819877 58820188 -223373476 - AluJb SINE Alu -3 309 1 1497 237 113 73 chr1 58820188 58820884 -223372780 - L1MEc LINE L1 -4937 1459 701 901 271 141 94 chr1 58820884 58821053 -223372611 + L2 LINE L2 2377 2537 -777 2268 114 0 0 chr1 58821053 58821351 -223372313 + AluSx SINE Alu 1 298 -14 901 271 141 94 chr1 58821351 58821412 -223372252 + L2 LINE L2 2537 2594 -720 2091 144 0 0 chr1 58821412 58821710 -223371954 + AluSx SINE Alu 1 298 -14 901 271 141 94 chr1 58821710 58821966 -223371698 + L2 LINE L2 2594 2887 -427 390 212 171 20 chr1 58822001 58822147 -223371517 - L2 LINE L2 -13 3300 3133 25 31 0 0 chr1 58822575 58822607 -223371057 + AT_rich Low_complexity Low_complexity 1 32 0 2275 105 0 0 chr1 58822837 58823147 -223370517 - AluSx SINE Alu 0 310 1 228 273 0 0 chr1 58823168 58823223 -223370441 + T-rich Low_complexity Low_complexity 1 55 0 290 152 22 0 chr1 58823547 58823593 -223370071 - AluS SINE Alu -23 277 231 2123 106 41 0 chr1 58823743 58824035 -223369629 + AluSq SINE Alu 1 304 -9 7484 182 103 10 chr1 58824074 58825680 -223367984 + MER52A LTR ERV1 1 1755 0 1881 162 0 3 chr1 58825809 58826121 -223367543 - AluSx SINE Alu 0 311 1 2529 64 0 3 chr1 58826324 58826636 -223367028 - AluY SINE Alu 0 311 1 1898 174 13 19 chr1 58826756 58827067 -223366597 - AluJb SINE Alu -3 309 1 482 341 84 57 chr1 58827108 58827513 -223366151 + L2 LINE L2 2852 3267 -5 202 289 72 48 chr1 58827644 58827727 -223365937 + L2 LINE L2 3188 3272 0 2036 142 0 7 chr1 58827784 58828087 -223365577 + AluJo SINE Alu 6 306 -6 1401 162 15 33 chr1 58828559 58828830 -223364834 - AluJb SINE Alu -23 289 24 818 238 97 65 chr1 58828879 58829012 -223364652 - MIR SINE MIR -2 260 133 658 205 39 0 chr1 58829012 58829139 -223364525 + FLAM_A SINE Alu 1 132 -1 818 238 97 65 chr1 58829139 58829253 -223364411 - MIR SINE MIR -129 133 5 1499 194 19 19 chr1 58829440 58829750 -223363914 - AluJo SINE Alu -1 311 2 2259 103 0 0 chr1 58829846 58830148 -223363516 - AluSq SINE Alu -11 302 1 1996 158 0 0 chr1 58830363 58830674 -223362990 - AluSx SINE Alu -1 311 1 1933 156 7 94 chr1 58831405 58831829 -223361835 + MLT1B LTR MaLR 4 390 0 888 288 175 11 chr1 58831896 58832330 -223361334 + L1MEc LINE L1 193 697 -5699 * 6657 249 88 30 chr1 58832326 58832983 -223360681 + L1MEc LINE L1 972 1590 -4625 1532 139 0 20 chr1 58832983 58833120 -223360544 + AluSq SINE Alu 1 132 -181 1886 128 27 7 chr1 58833120 58833418 -223360246 + AluSx SINE Alu 2 305 -7 1532 139 0 20 chr1 58833418 58833531 -223360133 + AluSq SINE Alu 132 246 -67 6657 249 88 30 chr1 58833531 58833730 -223359934 + L1MEc LINE L1 1590 1776 -4439 1663 182 3 0 chr1 58833730 58834021 -223359643 + AluJo SINE Alu 1 292 -20 6657 249 88 30 chr1 58834021 58834467 -223359197 + L1MEc LINE L1 1776 2195 -4020 2291 99 3 0 chr1 58834467 58834779 -223358885 + AluSq SINE Alu 1 313 0 2099 91 10 3 chr1 58834789 58835086 -223358578 + AluSx SINE Alu 1 299 -13 6657 249 88 30 chr1 58835086 58835823 -223357841 + L1MEc LINE L1 2203 2896 -3319 1659 121 151 11 chr1 58835823 58836088 -223357576 + AluSx SINE Alu 1 302 0 6657 249 88 30 chr1 58836088 58836949 -223356715 + L1MEc LINE L1 2896 3706 -2509 348 24 0 0 chr1 58836949 58836990 -223356674 + (TG)n Simple_repeat Simple_repeat 2 42 0 6657 249 88 30 chr1 58836990 58837390 -223356274 + L1MEc LINE L1 3706 4081 -2134 1747 172 3 0 chr1 58837390 58837681 -223355983 + AluJb SINE Alu 1 292 -20 6657 249 88 30 chr1 58837681 58837917 -223355747 + L1MEc LINE L1 4081 4302 -1913 2129 119 7 0 chr1 58837917 58838227 -223355437 + AluSx SINE Alu 1 312 0 6657 249 88 30 chr1 58838227 58838302 -223355362 + L1MEc LINE L1 4302 4769 -1446 2182 106 0 13 chr1 58838308 58838619 -223355045 + AluSc SINE Alu 1 307 -2 2252 95 3 0 chr1 58839508 58839812 -223353852 - AluY SINE Alu -6 305 1 261 0 0 0 chr1 58839821 58839850 -223353814 + (A)n Simple_repeat Simple_repeat 1 29 0 22 56 0 0 chr1 58841685 58841721 -223351943 + AT_rich Low_complexity Low_complexity 1 36 0 595 155 0 0 chr1 58842448 58842545 -223351119 - L1MC1 LINE L1 -114 6219 6123 2251 88 14 0 chr1 58842551 58842845 -223350819 - AluSx SINE Alu -14 298 1 2328 69 7 3 chr1 58843173 58843479 -223350185 + AluY SINE Alu 1 307 -4 1053 76 0 0 chr1 58844182 58844314 -223349350 - AluY SINE Alu -179 132 1 1629 97 0 0 chr1 58844341 58844558 -223349106 + AluSg/x SINE Alu 86 302 -10 2029 115 0 26 chr1 58844566 58844870 -223348794 + AluSx SINE Alu 1 296 -16 2151 117 3 0 chr1 58844882 58845181 -223348483 + AluSx SINE Alu 1 300 -12 198 304 118 10 chr1 58845386 58845488 -223348176 + MIR3 SINE MIR 66 178 -30 2134 80 14 0 chr1 58846829 58847117 -223346547 - AluSp SINE Alu -21 292 1 964 270 29 26 chr1 58847118 58847463 -223346201 + L1MEc LINE L1 4802 5147 -1068 316 215 170 25 chr1 58847469 58847628 -223346036 + L1MA10 LINE L1 5986 6334 0 181 290 0 87 chr1 58847843 58847912 -223345752 + L3 LINE CR1 1504 1566 -11 560 244 116 18 chr1 58848405 58848569 -223345095 + L2 LINE L2 30 209 -3105 2143 250 117 46 chr1 58848570 58849118 -223344546 + L2 LINE L2 2092 2600 -713 2316 82 7 0 chr1 58849118 58849421 -223344243 - AluSg SINE Alu -5 305 1 2143 250 117 46 chr1 58849421 58849553 -223344111 + L2 LINE L2 2600 2721 -592 2369 74 0 0 chr1 58849553 58849849 -223343815 - AluY SINE Alu -15 296 1 2143 250 117 46 chr1 58849849 58850298 -223343366 + L2 LINE L2 2721 3313 0 1326 178 7 62 chr1 58850377 58850516 -223343148 + AluJo SINE Alu 1 115 -197 1602 172 0 31 chr1 58850516 58850836 -223342828 + AluSp SINE Alu 4 313 0 1326 178 7 62 chr1 58850836 58851000 -223342664 + AluJo SINE Alu 115 287 -25 212 0 36 0 chr1 58851016 58851044 -223342620 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 223 271 34 0 chr1 58851419 58851478 -223342186 + L2 LINE L2 3147 3207 -65 984 165 173 36 chr1 58851597 58851742 -223341922 + AluSx SINE Alu 1 125 -196 1845 70 0 0 chr1 58851742 58851970 -223341694 + AluY SINE Alu 1 228 -83 984 165 173 36 chr1 58851970 58852111 -223341553 + AluSx SINE Alu 125 321 0 897 204 12 0 chr1 58852118 58852280 -223341384 + FRAM SINE Alu 1 164 -2 236 269 0 0 chr1 58852442 58852494 -223341170 - L2 LINE L2 -8 3264 3213 773 265 27 0 chr1 58853111 58853296 -223340368 - MIR SINE MIR -20 242 53 1831 127 0 63 chr1 58853310 58853625 -223340039 + AluSq SINE Alu 1 295 -18 2205 98 3 0 chr1 58853625 58853922 -223339742 + AluSc SINE Alu 1 298 -11 2086 102 3 3 chr1 58854065 58854358 -223339306 + AluSg SINE Alu 1 293 -17 1958 124 3 13 chr1 58854435 58854749 -223338915 + AluSx SINE Alu 1 311 -1 193 354 62 0 chr1 58854976 58855041 -223338623 - L2 LINE L2 -670 2644 2576 1169 222 42 27 chr1 58855720 58856054 -223337610 + L1M4 LINE L1 4405 4743 -1403 * 1240 196 71 16 chr1 58856052 58856363 -223337301 + L1M4 LINE L1 4958 5285 -861 2293 74 7 0 chr1 58856367 58856666 -223336998 + AluY SINE Alu 1 301 -10 327 209 36 7 chr1 58856671 58856766 -223336898 + FRAM/FAM SINE Alu 13 61 -114 213 39 0 0 chr1 58856766 58856792 -223336872 + (CATAA)n Simple_repeat Simple_repeat 2 27 0 2035 107 10 0 chr1 58856835 58857125 -223336539 + AluSp SINE Alu 1 293 -20 2633 126 90 9 chr1 58857125 58857592 -223336072 - MER41B LTR ERV1 -130 505 1 1989 124 7 7 chr1 58857602 58857908 -223335756 - AluSx SINE Alu -6 306 1 809 225 0 31 chr1 58858069 58858260 -223335404 + AluJo SINE Alu 1 185 -127 213 209 59 150 chr1 58858691 58858844 -223334820 - MIR SINE MIR -58 204 66 1097 195 164 173 chr1 58859927 58860352 -223333312 - L1MC4a LINE L1 -1 8041 7614 1824 105 0 79 chr1 58860352 58860667 -223332997 - AluSx SINE Alu -22 290 1 1097 195 164 173 chr1 58860667 58861125 -223332539 - L1MC4a LINE L1 -428 7614 7153 807 186 0 0 chr1 58861125 58861293 -223332371 - FRAM SINE Alu 0 168 1 1097 195 164 173 chr1 58861293 58861557 -223332107 - L1MC4a LINE L1 -889 7153 6688 31 0 0 0 chr1 58862568 58862599 -223331065 + AT_rich Low_complexity Low_complexity 1 31 0 2030 110 13 3 chr1 58862873 58863173 -223330491 - AluSp SINE Alu -10 303 1 1915 131 0 3 chr1 58863708 58864005 -223329659 - AluSx SINE Alu -16 296 1 2187 109 0 0 chr1 58864562 58864865 -223328799 + AluSg SINE Alu 1 303 -7 25 0 0 0 chr1 58865493 58865518 -223328146 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr1 58866259 58866281 -223327383 + (TAGA)n Simple_repeat Simple_repeat 2 23 0 254 300 25 0 chr1 58867217 58867297 -223326367 + MIR SINE MIR 56 137 -71 430 335 47 11 chr1 58868023 58868214 -223325450 + MIR SINE MIR 5 202 -60 514 194 56 62 chr1 58869687 58869831 -223323833 - MIR SINE MIR -87 175 33 220 325 26 0 chr1 58870853 58870930 -223322734 + MIR SINE MIR 45 123 -85 360 225 50 12 chr1 58870997 58871107 -223322557 + MIR SINE MIR 4 118 -101 229 121 35 121 chr1 58872529 58872587 -223321077 + MIR3 SINE MIR 109 161 -47 195 139 0 0 chr1 58874414 58874450 -223319214 + (TCC)n Simple_repeat Simple_repeat 1 36 0 281 281 78 12 chr1 58874825 58874963 -223318701 - MIR SINE MIR -80 182 35 239 209 109 73 chr1 58875890 58876000 -223317664 - MIR SINE MIR -1 261 148 2497 36 0 3 chr1 58876001 58876304 -223317360 + AluY SINE Alu 1 302 -9 1192 175 32 4 chr1 58876312 58876558 -223317106 - L1MB3 LINE L1 0 6183 5931 2303 87 0 0 chr1 58876569 58876869 -223316795 - AluSx SINE Alu -12 300 1 717 199 12 37 chr1 58877832 58877993 -223315671 - MER3 DNA MER1_type -26 183 27 404 294 184 24 chr1 58878075 58878412 -223315252 - L2 LINE L2 -13 3259 2869 203 246 31 0 chr1 58878632 58878697 -223314967 + (CGGG)n Simple_repeat Simple_repeat 4 70 0 21 36 0 0 chr1 58878866 58878894 -223314770 + GC_rich Low_complexity Low_complexity 1 28 0 191 295 221 16 chr1 58879681 58879803 -223313861 - MIR SINE MIR -34 228 82 1355 138 35 4 chr1 58879900 58880132 -223313532 + AluJb SINE Alu 65 303 -9 3382 115 36 0 chr1 58880142 58880637 -223313027 - LTR38B LTR ERV1 -95 515 3 1769 161 3 3 chr1 58880764 58881068 -223312596 - AluJb SINE Alu -8 304 1 29 0 0 0 chr1 58881114 58881143 -223312521 + AT_rich Low_complexity Low_complexity 1 29 0 411 252 76 17 chr1 58881184 58881303 -223312361 + L2 LINE L2 3187 3312 -1 282 265 65 29 chr1 58882374 58882544 -223311120 - L1ME3A LINE L1 -213 5957 5782 445 182 46 0 chr1 58882551 58882657 -223311007 - L1ME3A LINE L1 -385 5736 5623 391 91 0 0 chr1 58882658 58882713 -223310951 - MLT2A2 LTR ERVL 0 453 399 249 254 0 0 chr1 58882717 58882788 -223310876 + (TG)n Simple_repeat Simple_repeat 2 72 0 660 250 0 0 chr1 58882893 58883258 -223310406 + C-rich Low_complexity Low_complexity 1 365 0 507 231 13 4 chr1 58883277 58883526 -223310138 + C-rich Low_complexity Low_complexity 1 251 0 291 114 0 0 chr1 58883649 58883693 -223309971 + (TA)n Simple_repeat Simple_repeat 1 44 0 2089 99 82 25 chr1 58883739 58884094 -223309570 + THE1C LTR MaLR 1 375 0 2042 136 10 0 chr1 58884321 58884630 -223309034 - AluSx SINE Alu 0 312 1 1143 263 96 18 chr1 58884720 58885177 -223308487 - L1MC4 LINE L1 -133 7909 7417 1941 112 24 17 chr1 58885177 58885473 -223308191 - AluSx SINE Alu -14 298 1 248 209 44 33 chr1 58885516 58885607 -223308057 - L1M4 LINE L1 -1487 4659 4568 752 187 30 0 chr1 58885635 58885769 -223307895 + FRAM SINE Alu 1 137 -39 189 0 0 0 chr1 58885769 58885790 -223307874 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2123 55 33 4 chr1 58885975 58886277 -223307387 - AluY SINE Alu 0 310 1 21 0 0 0 chr1 58886277 58886298 -223307366 + AT_rich Low_complexity Low_complexity 1 21 0 1236 153 44 0 chr1 58886718 58886921 -223306743 + AluJb SINE Alu 82 293 -19 346 254 55 45 chr1 58887332 58887442 -223306222 + MIR SINE MIR 31 141 -121 230 382 42 30 chr1 58887752 58887917 -223305747 + L2 LINE L2 3105 3271 -1 233 209 233 12 chr1 58888302 58888388 -223305276 + L2 LINE L2 3186 3290 -23 1121 78 0 0 chr1 58889868 58890010 -223303654 + AluSq/x SINE Alu 1 142 -170 1932 109 47 0 chr1 58890015 58890290 -223303374 + AluSx SINE Alu 5 292 -20 1384 112 0 6 chr1 58890796 58891047 -223302617 - AluSq SINE Alu -8 305 1 2000 143 0 0 chr1 58891050 58891351 -223302313 - AluJb SINE Alu -9 303 3 386 284 61 75 chr1 58891364 58891723 -223301941 + L1MEd LINE L1 470 823 -5296 2158 100 3 0 chr1 58891843 58892144 -223301520 + AluY SINE Alu 1 302 -9 1949 119 7 14 chr1 58892156 58892449 -223301215 + AluSx SINE Alu 1 291 -21 2245 82 0 0 chr1 58892531 58892822 -223300842 + AluY SINE Alu 2 292 -19 437 316 20 7 chr1 58892824 58892976 -223300688 + HAL1 LINE L1 138 291 -2216 1862 75 0 8 chr1 58893020 58893273 -223300391 - AluSc SINE Alu -10 299 49 213 178 0 0 chr1 58893586 58893631 -223300033 + A-rich Low_complexity Low_complexity 1 45 0 229 132 0 26 chr1 58894168 58894206 -223299458 + MER58A DNA MER1_type 37 73 -34 2028 112 0 0 chr1 58894206 58894492 -223299172 + AluSc SINE Alu 23 308 -1 832 257 186 38 chr1 58894492 58894916 -223298748 + HAL1 LINE L1 449 935 -1572 2204 98 3 0 chr1 58894945 58895240 -223298424 + AluSx SINE Alu 1 296 -16 325 236 0 98 chr1 58895248 58895371 -223298293 + HAL1 LINE L1 1029 1139 -1368 426 254 73 52 chr1 58895746 58895913 -223297751 - MIR SINE MIR -59 203 38 215 290 0 16 chr1 58896086 58896148 -223297516 + L2 LINE L2 3206 3266 -6 2254 81 0 3 chr1 58896512 58896810 -223296854 - AluY SINE Alu -14 297 1 269 86 0 0 chr1 58896812 58896847 -223296817 - AluSp SINE Alu -132 171 137 372 311 15 61 chr1 58897001 58897104 -223296560 + L2 LINE L2 3146 3243 -29 2420 75 0 0 chr1 58897104 58897411 -223296253 - AluSp SINE Alu -6 307 1 372 311 15 61 chr1 58897411 58897439 -223296225 + L2 LINE L2 3243 3271 -1 1719 126 78 0 chr1 58897607 58897878 -223295786 - AluSx SINE Alu -18 294 3 229 378 42 17 chr1 58898879 58898998 -223294666 + L2 LINE L2 3170 3291 -22 187 307 88 44 chr1 58899998 58900112 -223293552 - MER5B DNA MER1_type -59 119 1 1445 165 49 25 chr1 58901216 58901501 -223292163 + AluJb SINE Alu 6 297 -15 1402 160 0 9 chr1 58901637 58901850 -223291814 + MER1B DNA MER1_type 129 339 0 2033 118 3 3 chr1 58901877 58902173 -223291491 - AluSx SINE Alu -16 296 1 756 265 55 5 chr1 58903168 58903387 -223290277 - MIR SINE MIR -19 243 14 185 231 0 77 chr1 58904098 58904150 -223289514 - L2 LINE L2 -4 3268 3221 400 247 0 0 chr1 58904284 58904377 -223289287 + L1 LINE L1 4128 4220 -1926 2234 85 3 7 chr1 58904483 58904789 -223288875 - AluY SINE Alu -6 305 1 1165 40 0 20 chr1 58905858 58906010 -223287654 + L1PA6 LINE L1 6006 6154 0 194 383 53 0 chr1 58906078 58906172 -223287492 + L3 LINE CR1 505 603 -974 263 306 0 0 chr1 58906214 58906276 -223287388 + MER5A DNA MER1_type 128 189 0 923 128 0 0 chr1 58906383 58906516 -223287148 + AluJo/FLAM SINE Alu 1 133 -169 2085 110 0 7 chr1 58906518 58906819 -223286845 + AluSx SINE Alu 1 299 -13 1080 206 57 5 chr1 58906905 58907114 -223286550 - MER58A DNA MER1_type -2 222 3 1532 262 109 17 chr1 58907982 58908492 -223285172 - MLT1G LTR MaLR -46 544 1 2200 102 0 0 chr1 58908560 58908855 -223284809 + AluSx SINE Alu 1 295 -17 1618 130 32 8 chr1 58909166 58909412 -223284252 - AluSx SINE Alu -60 252 1 940 184 74 0 chr1 58909552 58909715 -223283949 + FAM SINE Alu 1 175 0 244 317 0 24 chr1 58910105 58910187 -223283477 - L2 LINE L2 -4 3309 3230 362 311 45 23 chr1 58911018 58911150 -223282514 - MIR SINE MIR -108 154 20 352 217 48 0 chr1 58911150 58911233 -223282431 + L2 LINE L2 2404 2490 -824 2175 96 7 0 chr1 58911482 58911775 -223281889 + AluSp SINE Alu 1 295 -18 1821 148 0 10 chr1 58912043 58912341 -223281323 - AluSx SINE Alu -16 296 2 185 262 0 0 chr1 58912552 58912594 -223281070 - L2 LINE L2 -899 2415 2374 277 297 48 76 chr1 58913342 58913369 -223280295 - MIR SINE MIR -115 147 121 2108 118 0 16 chr1 58913369 58913683 -223279981 + AluSx SINE Alu 1 309 -3 2176 96 3 7 chr1 58913686 58913989 -223279675 + AluSp SINE Alu 1 302 -11 277 297 48 76 chr1 58913989 58914102 -223279562 - MIR SINE MIR -143 119 7 262 288 90 27 chr1 58914281 58914392 -223279272 + MIR3 SINE MIR 88 205 -3 277 319 0 33 chr1 58914414 58914505 -223279159 - MIR SINE MIR -116 146 59 356 253 65 25 chr1 58914722 58914882 -223278782 - MIR3 SINE MIR -70 138 1 2072 63 0 19 chr1 58915013 58915282 -223278382 - AluY SINE Alu -14 297 34 2174 92 7 3 chr1 58915283 58915576 -223278088 - AluSg SINE Alu -16 294 1 281 188 0 0 chr1 58915656 58915704 -223277960 - Alu SINE Alu -7 293 246 947 264 26 11 chr1 58915879 58916148 -223277516 - AluSx SINE Alu -19 293 21 1075 271 0 3 chr1 59016469 59016775 -223176889 + L1M4 LINE L1 2614 2918 -3228 * 1091 186 35 32 chr1 59016774 59017059 -223176605 + L1MA8 LINE L1 5994 6279 -12 910 221 17 0 chr1 59017129 59017364 -223176300 + L1M4 LINE L1 2894 3132 -3014 2027 133 30 7 chr1 59017365 59017665 -223175999 + AluSx SINE Alu 1 307 -5 418 240 0 66 chr1 59017665 59017786 -223175878 + L1M4 LINE L1 4996 5108 -1038 2147 107 4 0 chr1 59017797 59018119 -223175545 + AluSx SINE Alu 2 324 0 236 374 0 0 chr1 59018184 59018299 -223175365 + L1 LINE L1 3586 3700 -2446 769 188 8 8 chr1 59018354 59018487 -223175177 + FLAM_A SINE Alu 1 133 0 490 312 6 6 chr1 59018679 59018849 -223174815 - LTR33 LTR ERVL -346 175 6 567 261 42 92 chr1 59018849 59019011 -223174653 + L1 LINE L1 3694 3862 -2284 2304 120 0 9 chr1 59019011 59019327 -223174337 - AluSq SINE Alu 0 313 1 567 261 42 92 chr1 59019327 59019532 -223174132 + L1 LINE L1 3862 4076 -2070 180 0 0 0 chr1 59019532 59019552 -223174112 + (TAA)n Simple_repeat Simple_repeat 2 21 0 567 261 42 92 chr1 59019552 59019842 -223173822 + L1 LINE L1 4076 4309 -1837 329 98 0 32 chr1 59019844 59019905 -223173759 + Alu SINE Alu 1 44 -258 1504 188 67 12 chr1 59019926 59020271 -223173393 - MLT1B LTR MaLR -26 364 1 539 274 58 44 chr1 59020769 59020983 -223172681 + MIR SINE MIR 1 220 -42 2128 105 28 0 chr1 59020983 59021269 -223172395 + AluSq SINE Alu 1 294 -19 539 274 58 44 chr1 59021269 59021280 -223172384 + MIR SINE MIR 220 229 -33 1740 164 15 86 chr1 59021284 59021492 -223172172 + MLT1B LTR MaLR 1 167 -223 2461 76 0 0 chr1 59021492 59021793 -223171871 + AluSg SINE Alu 1 301 -9 1740 164 15 86 chr1 59021793 59021993 -223171671 + MLT1B LTR MaLR 167 380 -10 931 240 99 63 chr1 59023435 59023881 -223169783 + MLT1D LTR MaLR 41 502 -3 1104 211 104 15 chr1 59023915 59024036 -223169628 - AluSp SINE Alu 0 308 199 1491 143 9 0 chr1 59024036 59024253 -223169411 - AluSx SINE Alu -93 219 1 1104 211 104 15 chr1 59024253 59024289 -223169375 - AluSp SINE Alu -109 199 168 2204 126 0 0 chr1 59024289 59024582 -223169082 + AluSx SINE Alu 1 293 -19 1104 211 104 15 chr1 59024582 59024708 -223168956 - AluSp SINE Alu -140 168 1 253 0 54 0 chr1 59025273 59025310 -223168354 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 2234 125 0 10 chr1 59025820 59026131 -223167533 + AluSx SINE Alu 1 308 -4 2363 92 3 10 chr1 59026136 59026439 -223167225 + AluSq SINE Alu 1 301 -12 2198 104 17 7 chr1 59027230 59027528 -223166136 + AluSx SINE Alu 1 301 -11 2125 125 0 29 chr1 59027528 59027663 -223166001 + AluSq SINE Alu 2 139 -174 2547 50 0 10 chr1 59027663 59027961 -223165703 + AluY SINE Alu 1 295 -16 2125 125 0 29 chr1 59027961 59028137 -223165527 + AluSq SINE Alu 139 304 -9 1281 125 0 70 chr1 59029118 59029206 -223164458 + AluJo SINE Alu 58 151 -161 261 0 0 0 chr1 59029206 59029235 -223164429 + (TA)n Simple_repeat Simple_repeat 2 30 0 1281 125 0 70 chr1 59029235 59029396 -223164268 + AluJo SINE Alu 151 274 -38 283 167 0 19 chr1 59029408 59029462 -223164202 - MER58 DNA MER1_type -162 53 1 525 168 8 76 chr1 59030054 59030185 -223163479 + FRAM SINE Alu 37 158 -18 347 158 0 66 chr1 59030186 59030262 -223163402 - MER53 DNA DNA -118 71 1 244 239 21 133 chr1 59030473 59030494 -223163170 - MER102a DNA MER1_type -1088 329 307 2320 95 7 0 chr1 59030494 59030790 -223162874 + AluSx SINE Alu 1 298 -14 244 239 21 133 chr1 59030790 59030956 -223162708 - MER102a DNA MER1_type -1110 307 163 681 156 35 106 chr1 59031141 59031262 -223162402 - MER53 DNA DNA -4 185 82 1868 163 7 3 chr1 59031262 59031556 -223162108 + AluJo SINE Alu 1 295 -17 681 156 35 106 chr1 59031556 59031633 -223162031 - MER53 DNA DNA -107 82 1 473 288 139 13 chr1 59031715 59031912 -223161752 + MIR SINE MIR 39 252 -10 1268 179 161 91 chr1 59032605 59032918 -223160746 - MLT1C LTR MaLR -8 459 169 2301 101 0 0 chr1 59032918 59033205 -223160459 + AluSx SINE Alu 1 287 -25 1268 179 161 91 chr1 59033205 59033216 -223160448 - MLT1C LTR MaLR -298 169 160 207 0 0 0 chr1 59033216 59033239 -223160425 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1268 179 161 91 chr1 59033239 59033342 -223160322 - MLT1C LTR MaLR -307 160 1 1035 205 12 75 chr1 59033417 59033739 -223159925 + L1ME2 LINE L1 5845 6146 -18 470 238 0 0 chr1 59033780 59033864 -223159800 + AluJo SINE Alu 2 85 -227 497 133 0 0 chr1 59033866 59033941 -223159723 + HY5 scRNA scRNA 1 75 -9 1377 171 0 25 chr1 59033952 59034191 -223159473 + AluJo SINE Alu 76 308 -4 1047 223 64 49 chr1 59034225 59034571 -223159093 + MLT1I LTR MaLR 52 402 -7 639 118 0 0 chr1 59034872 59034965 -223158699 + AluSc SINE Alu 207 299 -10 208 234 21 0 chr1 59035333 59035380 -223158284 + L3 LINE CR1 1524 1571 -6 580 285 76 27 chr1 59035419 59035645 -223158019 - MIR SINE MIR -22 240 9 1678 75 0 28 chr1 59035855 59036067 -223157597 - AluSg/x SINE Alu -21 289 84 713 141 23 28 chr1 59036086 59036263 -223157401 + GA-rich Low_complexity Low_complexity 2 177 0 186 275 75 25 chr1 59037014 59037094 -223156570 - L2 LINE L2 -43 3229 3146 2236 69 4 11 chr1 59037301 59037577 -223156087 + AluSg SINE Alu 14 287 -23 522 0 0 0 chr1 59037577 59037635 -223156029 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 2339 101 0 0 chr1 59039291 59039587 -223154077 + AluSg SINE Alu 1 296 -14 332 283 133 0 chr1 59040816 59040936 -223152728 - L2 LINE L2 -14 3299 3164 2331 82 0 33 chr1 59040996 59041302 -223152362 + AluSx SINE Alu 1 296 -16 2119 123 0 20 chr1 59041494 59041630 -223152034 + AluSx SINE Alu 1 138 -174 2415 106 3 0 chr1 59041630 59041942 -223151722 + AluSp SINE Alu 1 313 0 2119 123 0 20 chr1 59041942 59042107 -223151557 + AluSx SINE Alu 138 296 -16 386 241 219 75 chr1 59042109 59042144 -223151520 + MIR SINE MIR 2 31 -231 1866 184 7 0 chr1 59042144 59042448 -223151216 + AluJb SINE Alu 1 306 -6 386 241 219 75 chr1 59042448 59042640 -223151024 + MIR SINE MIR 31 262 0 628 139 0 9 chr1 59144042 59144150 -223049514 - AluSp/q SINE Alu -9 304 198 307 263 0 14 chr1 59144193 59144274 -223049390 + MIR SINE MIR 26 106 -102 2484 69 10 0 chr1 59144331 59144636 -223049028 - AluY SINE Alu -3 308 1 199 227 67 13 chr1 59144649 59144724 -223048940 + MIR SINE MIR 103 181 -81 2289 102 0 0 chr1 59144812 59145106 -223048558 - AluSx SINE Alu -18 294 1 256 289 82 7 chr1 59147272 59147407 -223046257 + MER112 DNA MER1_type 8 152 -108 2464 77 3 3 chr1 59147571 59147882 -223045782 + AluSp SINE Alu 1 311 -2 2239 60 39 0 chr1 59148266 59148551 -223045113 + AluY SINE Alu 1 296 -15 500 257 82 5 chr1 59148620 59148826 -223044838 + HAL1b LINE L1 481 702 -646 410 235 214 34 chr1 59148900 59149312 -223044352 + HAL1b LINE L1 846 1331 -17 451 272 23 47 chr1 59149393 59149650 -223044014 + L1ME4a LINE L1 5536 5786 -335 1873 128 62 9 chr1 59150121 59150442 -223043222 + MER2 DNA MER2_type 8 345 0 2212 113 7 3 chr1 59151138 59151439 -223042225 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 59151906 59151927 -223041737 + AT_rich Low_complexity Low_complexity 1 21 0 188 338 178 9 chr1 59153259 59153484 -223040180 + L2 LINE L2 2715 2977 -337 221 278 28 28 chr1 59153684 59153756 -223039908 + L2 LINE L2 3242 3313 0 519 337 56 61 chr1 59154062 59154578 -223039086 - L2 LINE L2 0 3272 2764 243 343 0 15 chr1 59154647 59154714 -223038950 + MIR SINE MIR 2 67 -195 305 320 96 116 chr1 59155599 59155943 -223037721 - L2 LINE L2 -77 3195 2859 266 269 75 21 chr1 59155998 59156091 -223037573 + L2 LINE L2 3169 3266 -6 626 228 47 0 chr1 59156386 59156557 -223037107 + L1MC5 LINE L1 7259 7437 -524 323 242 167 102 chr1 59156577 59156703 -223036961 + L1MC5 LINE L1 7478 7594 -367 2112 78 28 25 chr1 59156703 59156842 -223036822 + AluSc SINE Alu 1 138 -171 2351 98 3 0 chr1 59156842 59157147 -223036517 + AluSx SINE Alu 1 306 -6 2112 78 28 25 chr1 59157147 59157291 -223036373 + AluSc SINE Alu 138 285 -24 323 242 167 102 chr1 59157291 59157577 -223036087 + L1MC5 LINE L1 7594 7917 -44 2223 59 0 7 chr1 59157580 59157850 -223035814 - AluY SINE Alu -11 300 33 922 173 13 13 chr1 59157897 59158053 -223035611 + FAM SINE Alu 1 156 -19 23 33 0 0 chr1 59158053 59158083 -223035581 + AT_rich Low_complexity Low_complexity 1 30 0 2031 140 10 7 chr1 59158083 59158390 -223035274 - AluSx SINE Alu -4 308 1 231 217 0 0 chr1 59158403 59158463 -223035201 + (TATG)n Simple_repeat Simple_repeat 2 61 0 245 223 248 8 chr1 59158536 59158657 -223035007 + L1ME4a LINE L1 5972 6121 0 2272 103 6 6 chr1 59158768 59159080 -223034584 - AluSx SINE Alu 0 312 1 737 222 124 11 chr1 59159214 59159399 -223034265 - MIR SINE MIR -56 206 1 37 81 0 0 chr1 59159966 59160052 -223033612 + AT_rich Low_complexity Low_complexity 1 86 0 465 321 73 120 chr1 59160250 59160443 -223033221 - L2 LINE L2 0 3272 3071 1241 199 53 0 chr1 59160443 59160669 -223032995 + MER8 DNA MER2_type 1 238 -1 465 321 73 120 chr1 59160669 59161139 -223032525 - L2 LINE L2 -201 3071 2580 1867 169 0 0 chr1 59161139 59161423 -223032241 + AluJb SINE Alu 4 287 -25 465 321 73 120 chr1 59161423 59161574 -223032090 - L2 LINE L2 -692 2580 2423 1913 124 7 7 chr1 59161574 59161856 -223031808 - AluSx SINE Alu -18 294 13 465 321 73 120 chr1 59161856 59162146 -223031518 - L2 LINE L2 -849 2423 2225 430 275 148 11 chr1 59162146 59162328 -223031336 + MIR SINE MIR 2 208 -54 307 255 39 29 chr1 59162829 59162931 -223030733 + MIR SINE MIR 109 211 -51 1734 161 17 24 chr1 59163053 59163351 -223030313 + AluSx SINE Alu 1 296 -16 695 207 50 7 chr1 59164261 59164401 -223029263 + FRAM SINE Alu 1 146 -30 204 67 0 0 chr1 59164401 59164431 -223029233 + (TC)n Simple_repeat Simple_repeat 1 30 0 2475 84 0 0 chr1 59164701 59165009 -223028655 + AluSq SINE Alu 1 308 -5 318 310 96 16 chr1 59165672 59165859 -223027805 - MIR SINE MIR -42 220 19 207 296 136 0 chr1 59166053 59166141 -223027523 + L2 LINE L2 3153 3252 -20 2230 104 0 7 chr1 59166175 59166482 -223027182 + AluSg SINE Alu 6 310 0 189 147 0 0 chr1 59166495 59166529 -223027135 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 369 311 34 14 chr1 59167081 59167229 -223026435 - MIR SINE MIR -91 171 21 2222 132 0 0 chr1 59167285 59167589 -223026075 + AluSx SINE Alu 1 304 -8 930 195 0 0 chr1 59167589 59167748 -223025916 + FAM SINE Alu 1 42 -7 3552 161 41 9 chr1 59168086 59168787 -223024877 + L1MB7 LINE L1 5451 6174 -10 771 174 8 0 chr1 59168795 59168927 -223024737 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr1 59168931 59168953 -223024711 + (T)n Simple_repeat Simple_repeat 1 22 0 240 338 56 14 chr1 59169046 59169188 -223024476 + L2 LINE L2 2420 2567 -747 1351 189 65 9 chr1 59169214 59169552 -223024112 - Cheshire DNA MER1_type -2 2418 2062 332 330 90 88 chr1 59169637 59169780 -223023884 - L2 LINE L2 -1837 1477 1336 2113 87 23 58 chr1 59169780 59170090 -223023574 - AluSg SINE Alu -11 299 1 332 330 90 88 chr1 59170090 59170384 -223023280 - L2 LINE L2 -1978 1336 1036 2067 135 3 0 chr1 59170384 59170681 -223022983 + AluSx SINE Alu 1 298 -14 332 330 90 88 chr1 59170681 59170842 -223022822 - L2 LINE L2 -2278 1036 877 873 168 95 17 chr1 59170981 59171160 -223022504 - MER46A DNA MER2_type 0 236 44 252 226 59 49 chr1 59171202 59171304 -223022360 + L1MC4 LINE L1 5729 5831 -1977 2283 97 3 7 chr1 59171504 59171804 -223021860 + AluSp SINE Alu 6 304 -9 2347 68 7 10 chr1 59171804 59172099 -223021565 + AluSp SINE Alu 1 294 -19 904 183 6 6 chr1 59172114 59172283 -223021381 + FRAM SINE Alu 1 169 -7 2222 102 7 0 chr1 59172453 59172747 -223020917 + AluSc SINE Alu 1 296 -13 2324 139 25 5 chr1 59173008 59173404 -223020260 + MLT2A1 LTR ERVL 1 404 -40 343 273 23 0 chr1 59173424 59173512 -223020152 + L1MC4 LINE L1 6614 6703 -1339 325 314 0 0 chr1 59173433 59173565 -223020099 - L1MC4 LINE L1 -1340 6702 6614 * 249 65 87 22 chr1 59173572 59173618 -223020046 + MLT2A2 LTR ERVL 405 453 0 573 218 28 95 chr1 59173958 59174169 -223019495 - L2 LINE L2 -2 3311 3115 2319 93 0 10 chr1 59175665 59175978 -223017686 + AluSg SINE Alu 1 310 0 268 277 134 18 chr1 59176210 59176322 -223017342 + MIR3 SINE MIR 38 162 -46 250 263 105 98 chr1 59176509 59176642 -223017022 + L2 LINE L2 3133 3266 -6 2323 107 0 3 chr1 59176803 59177111 -223016553 + AluSx SINE Alu 1 307 -5 273 29 0 0 chr1 59177564 59177598 -223016066 + (CA)n Simple_repeat Simple_repeat 2 35 0 2070 137 0 3 chr1 59177804 59178097 -223015567 - AluSx SINE Alu -20 292 1 1627 171 37 9 chr1 59178107 59178434 -223015230 - L1MB3 LINE L1 -1 6182 5847 250 200 0 17 chr1 59179011 59179071 -223014593 + (TAA)n Simple_repeat Simple_repeat 2 60 0 215 313 201 8 chr1 59179138 59179272 -223014392 - MIR SINE MIR -79 183 24 2405 78 0 3 chr1 59179481 59179789 -223013875 + AluY SINE Alu 1 307 -4 1685 192 42 73 chr1 59179886 59180057 -223013607 + L1MC1 LINE L1 3234 3409 -2737 2332 81 0 3 chr1 59180057 59180354 -223013310 + AluSx SINE Alu 1 296 -16 1685 192 42 73 chr1 59180354 59180755 -223012909 + L1MC1 LINE L1 3409 3788 -2358 4337 187 53 11 chr1 59180789 59181598 -223012066 + MER21B LTR ERV1 7 849 -14 2125 103 17 7 chr1 59181600 59181902 -223011762 + AluSq SINE Alu 1 305 -8 5316 210 51 28 chr1 59181935 59183494 -223010170 + L1MC1 LINE L1 3853 5436 -754 1677 178 3 14 chr1 59183496 59183806 -223009858 + AluJb SINE Alu 1 307 0 262 75 25 0 chr1 59183814 59183854 -223009810 - MADE1 DNA Mariner 0 80 40 1581 153 47 18 chr1 59183854 59184128 -223009536 + AluJb SINE Alu 25 306 -6 314 121 0 17 chr1 59184132 59184190 -223009474 + (GGGGA)n Simple_repeat Simple_repeat 1 57 0 2191 142 21 5 chr1 59184230 59184617 -223009047 + L1MC1 LINE L1 5433 5825 -508 2291 88 3 28 chr1 59184619 59184936 -223008728 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr1 59184975 59184998 -223008666 + AT_rich Low_complexity Low_complexity 1 23 0 2639 119 39 67 chr1 59185009 59185529 -223008135 + L1MC1 LINE L1 5814 6318 -15 2521 68 0 6 chr1 59185720 59186031 -223007633 - AluSc SINE Alu 0 309 1 522 229 0 0 chr1 59187076 59187172 -223006492 + FLAM_C SINE Alu 20 115 -28 189 0 0 0 chr1 59187173 59187194 -223006470 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 888 259 41 35 chr1 59187211 59187528 -223006136 + L1MC4a LINE L1 5507 5825 -1983 1765 39 5 0 chr1 59187592 59187798 -223005866 + AluY SINE Alu 90 296 -15 1955 168 0 0 chr1 59187804 59188101 -223005563 + AluJb SINE Alu 1 297 -15 1995 112 11 3 chr1 59188101 59188386 -223005278 + AluSg SINE Alu 1 287 -23 28 0 0 0 chr1 59188390 59188418 -223005246 + AT_rich Low_complexity Low_complexity 1 28 0 2118 78 0 0 chr1 59188722 59189008 -223004656 + AluSx SINE Alu 26 311 0 599 229 153 13 chr1 59190391 59190548 -223003116 + MER5A DNA MER1_type 9 187 -2 664 309 19 45 chr1 59190613 59190673 -223002991 + MIR SINE MIR 2 62 -200 2459 68 0 3 chr1 59190673 59190981 -223002683 - AluY SINE Alu -2 309 3 664 309 19 45 chr1 59190981 59191185 -223002479 + MIR SINE MIR 62 259 -3 1058 170 93 10 chr1 59192462 59192698 -223000966 + MIR SINE MIR 3 256 -6 2375 80 0 10 chr1 59192740 59193051 -223000613 - AluSc SINE Alu -1 308 1 389 334 90 47 chr1 59193756 59194100 -222999564 + L2 LINE L2 2183 2541 -773 1034 188 0 0 chr1 59194372 59194542 -222999122 - FAM SINE Alu -5 170 1 1289 135 46 155 chr1 59194742 59194858 -222998806 + AluJo SINE Alu 19 146 -166 1708 171 17 27 chr1 59194858 59195157 -222998507 + AluJb SINE Alu 1 296 -16 216 0 0 0 chr1 59195157 59195181 -222998483 + (TA)n Simple_repeat Simple_repeat 2 25 0 2023 120 14 0 chr1 59195181 59195464 -222998200 - AluSq SINE Alu -26 287 1 1289 135 46 155 chr1 59195464 59195649 -222998015 + AluJo SINE Alu 143 289 -23 23 0 0 0 chr1 59195665 59195688 -222997976 + AT_rich Low_complexity Low_complexity 1 23 0 1183 261 176 27 chr1 59195795 59196621 -222997043 + L2 LINE L2 2345 3312 -1 180 326 23 12 chr1 59197391 59197477 -222996187 + L2 LINE L2 3185 3271 -1 5267 151 48 32 chr1 59197567 59198106 -222995558 + L1MC3 LINE L1 6031 6595 -1190 2334 76 0 3 chr1 59198106 59198408 -222995256 + AluY SINE Alu 1 301 -10 5267 151 48 32 chr1 59198408 59198868 -222994796 + L1MC3 LINE L1 6595 7046 -739 1277 195 47 30 chr1 59198874 59199281 -222994383 + L1ME1 LINE L1 5586 6018 -148 2374 98 0 0 chr1 59199506 59199812 -222993852 - AluSg SINE Alu -4 306 1 909 179 55 25 chr1 59200017 59200218 -222993446 + MER3 DNA MER1_type 2 208 -1 211 370 0 0 chr1 59200268 59200322 -222993342 + L2 LINE L2 3206 3259 -13 184 162 15 15 chr1 59201042 59201110 -222992554 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1018 220 56 50 chr1 59201760 59202101 -222991563 + L1MA10 LINE L1 5991 6333 -1 2011 136 0 3 chr1 59202422 59202709 -222990955 + AluJb SINE Alu 1 286 -26 2309 105 0 0 chr1 59204344 59204640 -222989024 - AluSx SINE Alu -14 298 3 22 56 0 0 chr1 59205650 59205686 -222987978 + AT_rich Low_complexity Low_complexity 1 36 0 1722 164 23 13 chr1 59205787 59206086 -222987578 + AluJo SINE Alu 1 302 -10 307 298 196 30 chr1 59206418 59206586 -222987078 - MIR3 SINE MIR -1 207 12 652 182 20 121 chr1 59206586 59206784 -222986880 - MER5B DNA MER1_type 0 178 1 22 0 0 0 chr1 59206809 59206831 -222986833 + AT_rich Low_complexity Low_complexity 1 22 0 241 211 35 0 chr1 59206859 59206916 -222986748 - L2 LINE L2 0 3272 3214 277 268 65 25 chr1 59206940 59207100 -222986564 - MIR SINE MIR -11 251 2 827 262 30 50 chr1 59207306 59207608 -222986056 - L2 LINE L2 -3 3310 3015 4015 237 85 45 chr1 59207722 59208210 -222985454 - L2 LINE L2 -520 2794 2327 2528 62 0 3 chr1 59208210 59208517 -222985147 + AluY SINE Alu 1 306 -5 4015 237 85 45 chr1 59208517 59209292 -222984372 - L2 LINE L2 -987 2327 1480 294 343 111 0 chr1 59209443 59209551 -222984113 + L2 LINE L2 3153 3272 0 300 180 210 30 chr1 59209732 59209832 -222983832 - MIR3 SINE MIR -4 204 87 26 0 0 0 chr1 59210165 59210191 -222983473 + AT_rich Low_complexity Low_complexity 1 26 0 429 304 42 90 chr1 59210838 59210945 -222982719 - L1MC4a LINE L1 -1880 5928 5817 1476 153 56 42 chr1 59210945 59211233 -222982431 - AluJb SINE Alu -20 292 1 429 304 42 90 chr1 59211233 59211772 -222981892 - L1MC4a LINE L1 -1991 5817 5313 333 242 0 0 chr1 59211955 59212021 -222981643 - MER2 DNA MER2_type 0 345 280 1968 114 4 0 chr1 59212026 59212290 -222981374 + AluSq SINE Alu 1 265 -48 26 74 0 0 chr1 59212297 59212351 -222981313 + AT_rich Low_complexity Low_complexity 1 54 0 444 129 118 54 chr1 59212389 59212482 -222981182 + FLAM_A SINE Alu 23 121 -21 195 42 0 0 chr1 59212537 59212561 -222981103 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1021 161 0 0 chr1 59212565 59212720 -222980944 + FRAM SINE Alu 1 155 -11 21 82 0 0 chr1 59212720 59212769 -222980895 + AT_rich Low_complexity Low_complexity 1 49 0 1025 168 29 24 chr1 59212774 59212983 -222980681 - MER2 DNA MER2_type -134 211 2 24 53 0 0 chr1 59213064 59213102 -222980562 + AT_rich Low_complexity Low_complexity 1 38 0 314 244 24 0 chr1 59213190 59213272 -222980392 - L1MC4a LINE L1 -1320 4826 4743 866 299 183 0 chr1 59213273 59213634 -222980030 + L2 LINE L2 2887 3313 0 638 315 114 18 chr1 59213675 59214358 -222979306 - L1MC4a LINE L1 -1701 4445 3697 205 271 0 21 chr1 59215604 59215652 -222978012 - MIR SINE MIR -72 136 90 1623 146 37 27 chr1 59215661 59215956 -222977708 + AluJb SINE Alu 1 298 -14 682 180 7 22 chr1 59216121 59216260 -222977404 + FLAM_C SINE Alu 3 139 -4 535 173 116 64 chr1 59216286 59216459 -222977205 - L2 LINE L2 -2 3311 3130 353 313 20 10 chr1 59216456 59216555 -222977109 - L2 LINE L2 -287 3026 2927 * 186 392 62 0 chr1 59218259 59218356 -222975308 + MIR3 SINE MIR 85 187 -21 1761 106 0 20 chr1 59218648 59218893 -222974771 - AluJb SINE Alu -12 300 61 2233 98 7 0 chr1 59219905 59220201 -222973463 + AluSg1 SINE Alu 1 298 -11 181 333 56 22 chr1 59220281 59220371 -222973293 - L2 LINE L2 0 3313 3221 657 306 36 32 chr1 59220917 59221165 -222972499 - MIR SINE MIR -1 261 13 2084 133 3 0 chr1 59221578 59221880 -222971784 - AluSq SINE Alu -10 303 1 204 125 0 0 chr1 59222071 59222103 -222971561 + (A)n Simple_repeat Simple_repeat 1 32 0 1373 190 40 33 chr1 59222300 59222600 -222971064 - AluJo SINE Alu -10 302 1 2158 120 0 0 chr1 59222907 59223207 -222970457 + AluSx SINE Alu 1 300 -12 391 232 286 38 chr1 59223463 59223648 -222970016 - MIR SINE MIR -30 232 2 2307 63 7 10 chr1 59226738 59227041 -222966623 - AluY SINE Alu -9 302 1 1897 162 0 0 chr1 59227102 59227399 -222966265 + AluSx SINE Alu 1 297 -15 513 0 0 0 chr1 59227400 59227457 -222966207 + (TA)n Simple_repeat Simple_repeat 2 58 0 867 153 18 83 chr1 59227457 59227614 -222966050 + L1MB3 LINE L1 4611 4777 -1369 1870 167 3 0 chr1 59227614 59227920 -222965744 + AluSx SINE Alu 1 307 -5 867 153 18 83 chr1 59227920 59227951 -222965713 + L1MB3 LINE L1 4777 4784 -1362 1917 156 10 0 chr1 59227951 59228252 -222965412 + AluJb SINE Alu 1 304 -8 867 153 18 83 chr1 59228252 59228291 -222965373 + L1MB3 LINE L1 4784 4824 -1322 901 85 42 0 chr1 59228291 59228409 -222965255 + AluSq/x SINE Alu 1 123 -189 319 196 0 0 chr1 59228412 59228468 -222965196 - L1MC4 LINE L1 -1334 6708 6653 1130 116 6 24 chr1 59228468 59228632 -222965032 + AluSg/x SINE Alu 136 296 -16 5004 165 18 41 chr1 59228633 59228849 -222964815 + L1MB3 LINE L1 4815 5034 -1149 1325 185 80 18 chr1 59228849 59228978 -222964686 + AluJo SINE Alu 1 120 -192 2256 111 7 3 chr1 59228978 59229284 -222964380 + AluSq SINE Alu 1 307 -6 1325 185 80 18 chr1 59229284 59229440 -222964224 + AluJo SINE Alu 120 304 -8 5004 165 18 41 chr1 59229440 59230638 -222963026 + L1MB3 LINE L1 5034 6182 -1 1852 147 3 32 chr1 59231107 59231420 -222962244 - AluSx SINE Alu -7 305 2 645 271 96 18 chr1 59231457 59231686 -222961978 - MIR SINE MIR -3 259 13 416 268 122 0 chr1 59231695 59231810 -222961854 - L2 LINE L2 -2 3311 3139 28 29 0 0 chr1 59231810 59231845 -222961819 + AT_rich Low_complexity Low_complexity 1 35 0 416 268 122 0 chr1 59231845 59231859 -222961805 - L2 LINE L2 -174 3139 3128 207 329 123 18 chr1 59231900 59232070 -222961594 + L2 LINE L2 1734 1921 -1393 632 196 8 17 chr1 59232080 59232198 -222961466 - FLAM_A SINE Alu -9 133 18 377 309 201 7 chr1 59232259 59232557 -222961107 + L2 LINE L2 1991 2346 -968 206 275 83 96 chr1 59232637 59232847 -222960817 + L2 LINE L2 2503 2711 -603 2172 126 0 0 chr1 59232847 59233140 -222960524 + AluSg SINE Alu 1 293 -17 206 275 83 96 chr1 59233140 59233169 -222960495 + L2 LINE L2 2711 2739 -575 2438 175 31 2 chr1 59233201 59233681 -222959983 - L1MB2 LINE L1 -127 6044 5551 299 222 0 14 chr1 59233681 59233753 -222959911 - L1MB2 LINE L1 -2055 4091 4021 390 149 40 27 chr1 59233757 59233831 -222959833 - FLAM SINE Alu 0 133 59 828 236 38 65 chr1 59233859 59233916 -222959748 - L1MB2 LINE L1 -2133 4013 3956 2259 119 0 0 chr1 59233916 59234219 -222959445 - AluSx SINE Alu -9 303 1 828 236 38 65 chr1 59234219 59234328 -222959336 - L1MB2 LINE L1 -2190 3956 3846 2004 112 66 0 chr1 59234328 59234615 -222959049 - AluSx SINE Alu -6 306 1 828 236 38 65 chr1 59234615 59234786 -222958878 - L1MB2 LINE L1 -2300 3846 3684 340 219 26 53 chr1 59234822 59234936 -222958728 - L1MB2 LINE L1 -2449 3697 3587 2508 273 111 9 chr1 59234968 59236045 -222957619 - L1MEc LINE L1 -5181 1215 30 671 112 43 2 chr1 59236106 59236288 -222957376 + MER46A DNA MER2_type 1 236 0 1852 184 0 7 chr1 59236306 59236610 -222957054 - AluSx SINE Alu -10 302 1 1395 123 26 0 chr1 59236647 59236842 -222956822 + AluSg/x SINE Alu 101 300 -12 239 277 78 126 chr1 59236976 59237247 -222956417 - L2 LINE L2 -9 3263 3006 515 348 96 51 chr1 59237426 59237854 -222955810 + L2 LINE L2 2826 3272 0 21 36 0 0 chr1 59238057 59238085 -222955579 + AT_rich Low_complexity Low_complexity 1 28 0 1872 162 3 10 chr1 59238528 59238842 -222954822 + AluSx SINE Alu 1 312 0 310 270 63 25 chr1 59238920 59239079 -222954585 + MARNA DNA Mariner 340 504 -82 457 371 34 13 chr1 59239147 59239384 -222954280 - MIR SINE MIR 0 262 21 200 200 278 0 chr1 59239649 59239739 -222953925 - MIR SINE MIR -75 187 73 1106 278 195 11 chr1 59239864 59240493 -222953171 - L2 LINE L2 -5 3308 2538 195 200 100 17 chr1 59240494 59240554 -222953110 - L2 LINE L2 -1077 2237 2173 953 230 59 27 chr1 59240789 59241011 -222952653 - MIR SINE MIR -25 237 9 1172 129 0 0 chr1 59241473 59241636 -222952028 + AluSg/x SINE Alu 134 296 -14 1288 146 165 11 chr1 59241651 59241911 -222951753 + AluJb SINE Alu 3 302 0 21 0 0 0 chr1 59241943 59241964 -222951700 + AT_rich Low_complexity Low_complexity 1 21 0 375 270 54 0 chr1 59242367 59242478 -222951186 + MIR SINE MIR 132 248 -14 2199 135 0 0 chr1 59242656 59242960 -222950704 + AluSx SINE Alu 1 304 -8 2261 117 0 0 chr1 59243275 59243575 -222950089 - AluSx SINE Alu -12 300 1 212 344 0 0 chr1 59243673 59243737 -222949927 + L2 LINE L2 3249 3312 -1 396 302 52 0 chr1 59243764 59243880 -222949784 + L2 LINE L2 3151 3272 0 646 208 39 32 chr1 59243946 59244100 -222949564 - MER58A DNA MER1_type -31 193 39 188 214 18 0 chr1 59244221 59244277 -222949387 + GA-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chr1 59244592 59244613 -222949051 + AT_rich Low_complexity Low_complexity 1 21 0 280 311 87 19 chr1 59245060 59245163 -222948501 + L2 LINE L2 3137 3246 -26 256 294 106 0 chr1 59245147 59245232 -222948432 + L2 LINE L2 2660 2753 -561 * 348 250 175 0 chr1 59245317 59245437 -222948227 - L2 LINE L2 -168 3145 3005 209 409 157 12 chr1 59245517 59245842 -222947822 + L2 LINE L2 2901 3272 0 182 279 82 68 chr1 59246022 59246169 -222947495 + L3 LINE CR1 1402 1550 -27 778 134 40 0 chr1 59246603 59246752 -222946912 + L1MB5 LINE L1 5655 5809 -365 1569 174 77 16 chr1 59246758 59247121 -222946543 - MLT1B LTR MaLR -5 385 1 1772 148 50 3 chr1 59247122 59247439 -222946225 + L1MB5 LINE L1 5807 6138 -36 2594 171 28 0 chr1 59247470 59247979 -222945685 + L1MB7 LINE L1 5593 6115 -69 2359 84 3 0 chr1 59248008 59248306 -222945358 - AluSq SINE Alu -14 299 1 21 0 0 0 chr1 59248318 59248339 -222945325 + AT_rich Low_complexity Low_complexity 1 21 0 1005 99 0 0 chr1 59248395 59248526 -222945138 + AluSg/x SINE Alu 162 292 -20 939 265 51 55 chr1 59248530 59248916 -222944748 - L2 LINE L2 -304 3009 2622 752 281 12 6 chr1 59248921 59249092 -222944572 + MER5A DNA MER1_type 12 183 -6 700 311 28 50 chr1 59249103 59249288 -222944376 + L2 LINE L2 2962 3137 -176 2378 89 0 3 chr1 59249288 59249591 -222944073 - AluSq SINE Alu -11 302 1 700 311 28 50 chr1 59249591 59249765 -222943899 + L2 LINE L2 3137 3313 0 2045 151 7 0 chr1 59249880 59250178 -222943486 + AluSx SINE Alu 1 300 -12 2222 110 0 3 chr1 59250181 59250472 -222943192 + AluSg SINE Alu 1 290 -20 495 300 89 53 chr1 59250857 59251104 -222942560 - MIR SINE MIR -1 261 6 2126 107 10 0 chr1 59251142 59251432 -222942232 + AluSq SINE Alu 1 293 -20 602 139 19 9 chr1 59251485 59251593 -222942071 - AluSg/x SINE Alu -7 305 197 495 300 89 53 chr1 59252096 59252343 -222941321 - MIR SINE MIR -1 261 6 1795 139 46 17 chr1 59252381 59252683 -222940981 + AluSx SINE Alu 1 311 -1 21 57 0 0 chr1 59253040 59253075 -222940589 + AT_rich Low_complexity Low_complexity 1 35 0 461 319 62 73 chr1 59253190 59253310 -222940354 + L2 LINE L2 2622 2742 -572 2187 64 42 3 chr1 59253310 59253593 -222940071 + AluY SINE Alu 1 294 -17 2052 124 11 0 chr1 59253599 59253882 -222939782 + AluSg SINE Alu 18 303 -7 461 319 62 73 chr1 59253882 59254027 -222939637 + L2 LINE L2 2747 2891 -423 2195 107 3 14 chr1 59255799 59256088 -222937576 + AluSq SINE Alu 1 286 -27 2273 95 0 20 chr1 59256322 59256628 -222937036 + AluSg SINE Alu 1 300 -10 1426 178 7 25 chr1 59256667 59256953 -222936711 + L1MC1 LINE L1 6043 6323 -10 2177 104 0 7 chr1 59256953 59257265 -222936399 + AluSg SINE Alu 1 310 0 1974 143 17 0 chr1 59257270 59257564 -222936100 + AluJb SINE Alu 1 299 -13 1439 163 13 4 chr1 59257842 59258069 -222935595 - AluJo SINE Alu -83 229 1 37 0 0 0 chr1 59258235 59258272 -222935392 + AT_rich Low_complexity Low_complexity 1 37 0 1760 189 0 10 chr1 59258893 59259194 -222934470 - AluJb SINE Alu -9 303 6 695 67 0 0 chr1 59259247 59259336 -222934328 + AluSg/x SINE Alu 215 303 -9 1382 83 29 5 chr1 59259397 59259601 -222934063 - L1MA1 LINE L1 0 6302 6094 1735 187 0 3 chr1 59259777 59260076 -222933588 + AluJb SINE Alu 1 298 -14 634 174 0 0 chr1 59260284 59260393 -222933271 - FRAM SINE Alu -14 162 54 423 343 22 8 chr1 59260519 59260653 -222933011 + L2 LINE L2 3133 3268 -4 1931 104 60 0 chr1 59260942 59261210 -222932454 - AluSc SINE Alu -1 308 25 376 229 216 14 chr1 59261231 59261372 -222932292 - HAL1 LINE L1 -33 2474 2363 1553 146 64 24 chr1 59261372 59261667 -222931997 - AluJb SINE Alu -5 307 1 376 229 216 14 chr1 59261667 59261743 -222931921 - HAL1 LINE L1 -144 2363 2213 303 244 26 0 chr1 59261883 59261961 -222931703 + MLT1J2 LTR MaLR 39 118 -332 390 239 33 0 chr1 59262097 59262189 -222931475 - MER5A DNA MER1_type -83 106 12 644 248 158 32 chr1 59262362 59262741 -222930923 - HAL1 LINE L1 -408 2099 1673 1835 162 17 10 chr1 59262742 59263038 -222930626 + AluSx SINE Alu 1 298 -14 31 26 0 0 chr1 59263403 59263441 -222930223 + AT_rich Low_complexity Low_complexity 1 38 0 1195 242 105 59 chr1 59263540 59263626 -222930038 - HAL1 LINE L1 -836 1671 1590 1780 174 0 32 chr1 59263626 59263936 -222929728 + AluJb SINE Alu 1 300 -12 1195 242 105 59 chr1 59263936 59264565 -222929099 - HAL1 LINE L1 -917 1590 923 2707 217 118 43 chr1 59264604 59265626 -222928038 + L1MB3 LINE L1 1236 2180 -4202 2125 102 18 3 chr1 59265626 59265911 -222927753 + AluSq SINE Alu 1 289 -24 2707 217 118 43 chr1 59265911 59265939 -222927725 + L1MB3 LINE L1 2180 2204 -4178 2203 87 19 16 chr1 59265939 59266251 -222927413 + AluSq SINE Alu 1 313 0 2707 217 118 43 chr1 59266251 59266686 -222926978 + L1MB3 LINE L1 2204 2605 -3777 2005 121 14 0 chr1 59266686 59266998 -222926666 + AluSq SINE Alu 1 316 0 2707 217 118 43 chr1 59266998 59267009 -222926655 + L1MB3 LINE L1 2605 2614 -3768 2030 154 0 0 chr1 59267009 59267308 -222926356 + AluSx SINE Alu 1 299 -13 2707 217 118 43 chr1 59267308 59267388 -222926276 + L1MB3 LINE L1 2614 2946 -3436 1732 166 54 0 chr1 59267436 59267732 -222925932 + AluJo SINE Alu 1 312 0 866 193 45 0 chr1 59267758 59267934 -222925730 + MER45B DNA AcHobo 431 614 -426 255 269 0 0 chr1 59267936 59267988 -222925676 + AluJ/monomer SINE Alu 2 53 -247 * 277 187 0 67 chr1 59267970 59268045 -222925619 - AluJ/FLAM SINE Alu -224 78 9 1959 110 9 60 chr1 59268665 59268984 -222924680 + AluSx SINE Alu 2 304 -8 2323 69 0 23 chr1 59268986 59269289 -222924375 + AluY SINE Alu 1 296 -15 2087 119 7 7 chr1 59269290 59269600 -222924064 + AluSg SINE Alu 1 310 0 638 177 21 14 chr1 59269826 59269967 -222923697 - Charlie1 DNA MER1_type 0 2761 2620 2146 132 0 10 chr1 59269979 59270289 -222923375 + AluSx SINE Alu 1 307 -5 2325 100 3 0 chr1 59270306 59270607 -222923057 + AluSx SINE Alu 1 302 -10 983 189 16 4 chr1 59270607 59270850 -222922814 + L1MB7 LINE L1 4959 5204 -942 * 2763 176 39 0 chr1 59270844 59271379 -222922285 + L1MB3 LINE L1 5572 6127 -56 5622 179 37 52 chr1 59271415 59271799 -222921865 + L1MB3 LINE L1 3951 4340 -2079 2240 74 25 0 chr1 59271799 59272110 -222921554 - AluSp SINE Alu 0 313 1 5622 179 37 52 chr1 59272110 59272539 -222921125 + L1MB3 LINE L1 4340 4774 -1645 2372 96 0 0 chr1 59272539 59272840 -222920824 - AluSx SINE Alu -11 301 1 5622 179 37 52 chr1 59272840 59273063 -222920601 + L1MB3 LINE L1 4774 4999 -1420 2355 75 3 3 chr1 59273063 59273358 -222920306 + AluY SINE Alu 1 295 -16 5622 179 37 52 chr1 59273358 59273831 -222919833 + L1MB3 LINE L1 4999 5478 -941 1810 174 3 3 chr1 59273831 59274141 -222919523 + AluJb SINE Alu 1 310 -2 2045 143 0 10 chr1 59274150 59274451 -222919213 + AluSx SINE Alu 1 298 -14 5622 179 37 52 chr1 59274451 59274896 -222918768 + L1MB3 LINE L1 5486 5936 -483 1721 159 3 55 chr1 59274896 59275222 -222918442 + AluJb SINE Alu 1 309 -3 5622 179 37 52 chr1 59275222 59275767 -222917897 + L1MB3 LINE L1 5936 6412 -7 3662 169 90 11 chr1 59275844 59275908 -222917756 + L1MB7 LINE L1 5195 5253 -931 1753 130 6 86 chr1 59275908 59276223 -222917441 + AluJb SINE Alu 3 292 -20 3662 169 90 11 chr1 59276223 59277073 -222916591 + L1MB7 LINE L1 5253 6164 -20 356 199 199 26 chr1 59277087 59277238 -222916426 - Charlie1 DNA MER1_type -2541 220 44 33 0 0 0 chr1 59277341 59277374 -222916290 + AT_rich Low_complexity Low_complexity 1 33 0 198 243 58 78 chr1 59277505 59277608 -222916056 - MIR SINE MIR -161 101 1 * 577 318 92 0 chr1 59277516 59277755 -222915909 + MIR SINE MIR 1 261 -1 271 293 12 24 chr1 59278213 59278295 -222915369 + MIR3 SINE MIR 12 92 -116 223 271 61 93 chr1 59278326 59278540 -222915124 + L2 LINE L2 2806 3012 -260 337 270 128 46 chr1 59278743 59278924 -222914740 + MIR SINE MIR 64 256 -6 1765 152 33 20 chr1 59279553 59279855 -222913809 - AluJo SINE Alu -6 306 1 27 0 0 0 chr1 59280477 59280504 -222913160 + AT_rich Low_complexity Low_complexity 1 27 0 231 36 0 0 chr1 59280743 59280771 -222912893 + (CA)n Simple_repeat Simple_repeat 1 28 0 198 103 0 0 chr1 59282061 59282090 -222911574 + (CCG)n Simple_repeat Simple_repeat 3 31 0 276 200 0 0 chr1 59282157 59282217 -222911447 + G-rich Low_complexity Low_complexity 2 61 0 188 229 29 0 chr1 59283533 59283568 -222910096 - MIR SINE MIR -61 147 112 211 283 177 18 chr1 59283611 59283724 -222909940 + MIR SINE MIR 9 139 -123 185 281 73 61 chr1 59284608 59284690 -222908974 - MIR SINE MIR -130 132 50 2036 100 0 0 chr1 59285032 59285302 -222908362 + AluSx SINE Alu 26 295 -17 213 314 29 19 chr1 59285338 59285443 -222908221 - L2 LINE L2 -500 2814 2709 320 247 13 26 chr1 59285580 59285657 -222908007 + L2 LINE L2 3187 3262 -10 182 312 134 32 chr1 59286167 59286324 -222907340 - L2 LINE L2 -463 2851 2679 * 266 377 138 0 chr1 59286302 59286461 -222907203 - L3 LINE CR1 -96 1481 1301 1374 159 19 87 chr1 59286490 59286618 -222907046 + AluJb SINE Alu 1 136 -176 1717 154 10 10 chr1 59286618 59286910 -222906754 + AluSx SINE Alu 1 292 -20 1374 159 19 87 chr1 59286910 59287102 -222906562 + AluJb SINE Alu 136 299 -13 2280 107 0 0 chr1 59287152 59287461 -222906203 - AluSx SINE Alu -3 309 1 1418 150 4 4 chr1 59287463 59287690 -222905974 - AluJb SINE Alu -12 300 74 1606 197 79 0 chr1 59287866 59288206 -222905458 + L1MB3 LINE L1 4822 5188 -958 404 206 69 39 chr1 59288209 59288311 -222905353 + FLAM_A SINE Alu 2 106 -36 543 159 376 0 chr1 59288350 59288539 -222905125 + L1MB3 LINE L1 5176 5460 -720 318 205 12 24 chr1 59288539 59288622 -222905042 + AluJo SINE Alu 57 138 -164 3830 142 0 55 chr1 59288622 59288744 -222904920 + L1MB3 LINE L1 5494 5621 -562 1780 122 4 15 chr1 59288744 59289015 -222904649 + AluSq SINE Alu 1 268 -45 3830 142 0 55 chr1 59289015 59289479 -222904185 + L1MB3 LINE L1 5621 6039 -144 1649 167 3 7 chr1 59289479 59289772 -222903892 + AluJo SINE Alu 1 292 -20 3830 142 0 55 chr1 59289772 59289875 -222903789 + L1MB3 LINE L1 6039 6146 -37 1054 146 0 0 chr1 59289875 59290033 -222903631 - AluSq SINE Alu -20 293 136 570 189 8 30 chr1 59290513 59290645 -222903019 + FLAM_C SINE Alu 5 133 0 1933 88 34 24 chr1 59290761 59291056 -222902608 - AluSx SINE Alu -14 298 1 784 183 0 0 chr1 59291116 59291242 -222902422 - FLAM_A SINE Alu -7 126 1 191 245 38 0 chr1 59291484 59291537 -222902127 - L2 LINE L2 -81 3191 3137 748 318 70 8 chr1 59291575 59291930 -222901734 + L2 LINE L2 2458 2834 -480 257 226 60 120 chr1 59292085 59292218 -222901446 - L1ME3A LINE L1 -81 6089 5965 1619 177 41 51 chr1 59292300 59292377 -222901287 - L1MD3 LINE L1 -8 7987 7911 1673 161 71 0 chr1 59292377 59292657 -222901007 - AluJb SINE Alu -12 300 1 1619 177 41 51 chr1 59292657 59292831 -222900833 - L1MD3 LINE L1 -84 7911 7739 1584 160 58 0 chr1 59292831 59293124 -222900540 - AluJb SINE Alu -2 310 1 1619 177 41 51 chr1 59293124 59293260 -222900404 - L1MD3 LINE L1 -256 7739 7603 368 333 109 12 chr1 59293771 59293936 -222899728 + MIR3 SINE MIR 12 192 -16 233 282 42 0 chr1 59294236 59294307 -222899357 - MIR SINE MIR -59 149 76 896 155 7 0 chr1 59294456 59294598 -222899066 - FAM SINE Alu -20 165 23 2061 126 0 0 chr1 59294720 59295021 -222898643 - AluSg SINE Alu -9 301 1 2300 96 0 0 chr1 59295026 59295328 -222898336 - AluSx SINE Alu -6 306 5 1084 159 6 0 chr1 59295570 59295752 -222897912 - AluJb SINE Alu -1 311 129 290 298 95 116 chr1 59295775 59296060 -222897604 + L2 LINE L2 2987 3265 -7 796 246 153 79 chr1 59296064 59296563 -222897101 + LTR67 LTR ERVL 4 543 -14 2185 142 0 65 chr1 59296563 59296980 -222896684 + MLT1B LTR MaLR 1 390 0 442 299 181 5 chr1 59297251 59297455 -222896209 + MIR SINE MIR 5 244 -18 802 146 0 62 chr1 59297651 59297795 -222895869 + FLAM_C SINE Alu 7 141 -2 567 276 85 35 chr1 59298133 59298332 -222895332 - MIR SINE MIR 0 262 54 1913 111 37 3 chr1 59298977 59299300 -222894364 + AluSx SINE Alu 1 312 0 198 321 119 52 chr1 59299413 59299547 -222894117 - L2 LINE L2 -5 3267 3125 1850 127 3 13 chr1 59299625 59299924 -222893740 - AluY SINE Alu -7 304 9 298 98 24 0 chr1 59299924 59299965 -222893699 - LTR12 LTR ERV1 -296 418 377 307 305 17 0 chr1 59299965 59300083 -222893581 - LTR30 LTR ERV1 -79 643 524 337 25 0 0 chr1 59300090 59300130 -222893534 - LTR12 LTR ERV1 -468 246 207 198 0 0 0 chr1 59300213 59300235 -222893429 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 1630 171 0 4 chr1 59300235 59300516 -222893148 - AluJo SINE Alu -32 280 1 249 303 189 30 chr1 59300516 59300648 -222893016 - L2 LINE L2 -10 3262 3110 396 286 48 36 chr1 59300831 59300999 -222892665 + L2 LINE L2 2885 3054 -218 206 125 100 0 chr1 59301143 59301183 -222892481 + L2 LINE L2 3270 3313 0 3949 98 60 39 chr1 59301215 59301836 -222891828 + MER51A LTR ERV1 1 634 0 204 284 137 0 chr1 59301893 59301995 -222891669 + L2 LINE L2 2939 3054 -218 189 193 0 105 chr1 59302276 59302333 -222891331 + L2 LINE L2 2307 2357 -957 252 313 172 0 chr1 59302335 59302434 -222891230 + MIR SINE MIR 16 131 -77 236 273 70 16 chr1 59302440 59302568 -222891096 - L2 LINE L2 -562 2752 2618 314 377 31 0 chr1 59302754 59302884 -222890780 - L2 LINE L2 -5 3267 3134 1398 212 48 41 chr1 59302911 59303223 -222890441 + L1ME3A LINE L1 5744 6061 -109 1607 146 3 55 chr1 59303223 59303531 -222890133 + AluJb SINE Alu 1 292 -20 1398 212 48 41 chr1 59303531 59303637 -222890027 + L1ME3A LINE L1 6061 6165 -5 2135 79 0 57 chr1 59303762 59304079 -222889585 + AluSx SINE Alu 1 299 -13 2232 102 3 0 chr1 59304350 59304654 -222889010 - AluSp SINE Alu -8 305 1 353 352 16 0 chr1 59304777 59304905 -222888759 - L1ME3A LINE L1 -233 5937 5808 381 264 57 0 chr1 59304978 59305084 -222888580 + MIR SINE MIR 37 148 -60 358 214 24 12 chr1 59305109 59305193 -222888471 - MIR SINE MIR -56 152 68 181 326 124 11 chr1 59305197 59305286 -222888378 - L2 LINE L2 -4 3268 3170 550 250 66 20 chr1 59305660 59305812 -222887852 - MIR SINE MIR -16 246 88 616 268 161 0 chr1 59305812 59306036 -222887628 + MER112 DNA MER1_type 1 260 0 271 346 69 8 chr1 59306108 59306238 -222887426 - L2 LINE L2 -18 3254 3117 827 229 6 11 chr1 59306244 59306423 -222887241 - MER5B DNA MER1_type 0 178 1 1313 173 49 52 chr1 59306466 59306773 -222886891 + AluJo SINE Alu 5 310 -2 357 293 98 18 chr1 59306855 59307019 -222886645 + LTR33 LTR ERVL 1 177 -344 778 98 53 8 chr1 59307088 59307220 -222886444 + AluSg/x SINE Alu 165 302 -8 318 282 92 44 chr1 59307267 59307473 -222886191 + LTR33 LTR ERVL 304 519 -2 1235 195 69 51 chr1 59307614 59307926 -222885738 + L2 LINE L2 1912 2235 -1079 2127 98 0 3 chr1 59307926 59308235 -222885429 - AluSx SINE Alu 0 308 1 1235 195 69 51 chr1 59308235 59308296 -222885368 + L2 LINE L2 2235 2293 -1021 3946 194 37 2 chr1 59308309 59309139 -222884525 - MER63C DNA MER1_type -1 929 71 303 28 0 0 chr1 59309142 59309178 -222884486 + (CA)n Simple_repeat Simple_repeat 2 37 0 2665 209 80 23 chr1 59309219 59309425 -222884239 + L2 LINE L2 2320 2513 -800 2082 102 7 7 chr1 59309425 59309746 -222883918 - AluSx SINE Alu 0 312 5 1480 164 75 11 chr1 59309750 59310030 -222883634 - AluJo SINE Alu -14 298 1 2665 209 80 23 chr1 59310030 59310528 -222883136 + L2 LINE L2 2515 3081 -232 2004 108 3 14 chr1 59310592 59310889 -222882775 + AluSx SINE Alu 1 294 -18 1163 83 24 12 chr1 59310952 59311121 -222882543 - LTR9B LTR ERV1 -128 516 346 978 132 0 7 chr1 59311121 59311273 -222882391 - L1P5 LINE L1 -332 5819 5669 1321 81 6 0 chr1 59311397 59311570 -222882094 - AluSp SINE Alu -15 298 125 470 305 94 19 chr1 59312102 59312315 -222881349 + L2 LINE L2 2862 3090 -182 621 300 139 33 chr1 59312361 59312407 -222881257 + L2 LINE L2 2646 2686 -586 1687 150 17 14 chr1 59312407 59312562 -222881102 - AluJo SINE Alu -20 292 134 2083 120 0 0 chr1 59312562 59312862 -222880802 - AluY SINE Alu -11 300 1 1687 150 17 14 chr1 59312862 59312993 -222880671 - AluJo SINE Alu -178 134 5 621 300 139 33 chr1 59312993 59313490 -222880174 + L2 LINE L2 2686 3262 -10 1225 227 111 20 chr1 59313660 59314066 -222879598 + LTR16A LTR ERVL 8 450 0 709 120 0 56 chr1 59314916 59315041 -222878623 - AluSp SINE Alu -194 119 2 424 240 80 0 chr1 59315079 59315179 -222878485 - AluJ SINE Alu -21 291 184 846 145 0 22 chr1 59315179 59315317 -222878347 - AluJ SINE Alu -177 135 1 1997 120 0 10 chr1 59315543 59315843 -222877821 + AluJb SINE Alu 1 297 -15 273 319 102 59 chr1 59315886 59316240 -222877424 - L2 LINE L2 -351 2963 2595 1867 86 4 0 chr1 59316261 59316505 -222877159 + AluSx SINE Alu 7 251 -61 352 315 46 0 chr1 59316687 59316817 -222876847 + MER117 DNA MER1_type 28 163 -34 858 255 31 15 chr1 59316890 59317149 -222876515 + L1ME3 LINE L1 5898 6160 -2 2152 120 0 0 chr1 59317160 59317460 -222876204 + AluSx SINE Alu 1 300 -12 2276 88 7 0 chr1 59317607 59317912 -222875752 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr1 59318219 59318240 -222875424 + AT_rich Low_complexity Low_complexity 1 21 0 1704 156 14 7 chr1 59318521 59318803 -222874861 + AluJo SINE Alu 1 284 -28 1800 94 29 0 chr1 59318879 59319156 -222874508 + L1MA2 LINE L1 6020 6304 0 931 167 6 12 chr1 59319171 59319333 -222874331 + FRAM SINE Alu 1 159 -17 1863 207 8 6 chr1 59319336 59319698 -222873966 + MLT1A1 LTR MaLR 1 363 -2 2604 77 12 77 chr1 59319715 59320029 -222873635 + THE1C LTR MaLR 1 285 -90 1991 95 0 24 chr1 59320029 59320323 -222873341 + AluSc SINE Alu 1 287 -22 2604 77 12 77 chr1 59320323 59320409 -222873255 + THE1C LTR MaLR 285 375 0 25 0 0 28 chr1 59320707 59320724 -222872940 + AT_rich Low_complexity Low_complexity 1 17 -18 2035 134 3 0 chr1 59320724 59321029 -222872635 - AluSx SINE Alu -6 306 1 25 0 0 28 chr1 59321029 59321047 -222872617 + AT_rich Low_complexity Low_complexity 17 35 0 1225 279 115 11 chr1 59321111 59321652 -222872012 - L1ME4a LINE L1 -3 6118 5522 2198 100 0 0 chr1 59323137 59323438 -222870226 + AluSx SINE Alu 1 301 -11 2075 103 0 10 chr1 59324133 59324451 -222869213 - AluSq SINE Alu 0 313 1 848 235 60 5 chr1 59324644 59324844 -222868820 + MIR SINE MIR 2 212 -50 879 140 10 90 chr1 59324972 59325172 -222868492 - MER119 DNA MER1_type 0 583 400 2159 109 7 0 chr1 59325180 59325484 -222868180 - AluSx SINE Alu -6 306 1 1976 100 20 27 chr1 59325972 59326271 -222867393 - AluSx SINE Alu -15 297 1 285 299 149 60 chr1 59326360 59326728 -222866936 - L2 LINE L2 -525 2789 2389 1852 206 35 51 chr1 59327022 59327088 -222866576 + L1M4 LINE L1 4747 4813 -1333 2089 83 0 4 chr1 59327088 59327364 -222866300 + AluY SINE Alu 19 293 -18 1852 206 35 51 chr1 59327364 59327760 -222865904 + L1M4 LINE L1 4813 5202 -944 2221 63 0 14 chr1 59327760 59328070 -222865594 + AluY SINE Alu 1 306 0 1852 206 35 51 chr1 59328070 59328174 -222865490 + L1M4 LINE L1 5202 5306 -840 * 2097 174 29 7 chr1 59328172 59328585 -222865079 + L1 LINE L1 4572 4993 -1153 1708 156 4 7 chr1 59328585 59328861 -222864803 + AluSx SINE Alu 1 275 -37 1216 119 0 0 chr1 59328861 59329029 -222864635 + AluSg/x SINE Alu 121 288 -24 894 166 0 46 chr1 59329066 59329241 -222864423 + FRAM SINE Alu 1 40 0 2220 108 0 0 chr1 59329244 59329551 -222864113 + AluSg SINE Alu 1 307 -3 1794 129 18 7 chr1 59329553 59329831 -222863833 + Tigger1 DNA MER2_type 842 1122 -1296 2130 110 10 3 chr1 59329843 59330153 -222863511 - AluSx SINE Alu 0 312 1 464 308 70 53 chr1 59330665 59331012 -222862652 + L2 LINE L2 2722 3072 -200 1051 128 27 27 chr1 59331761 59331948 -222861716 + MER5A DNA MER1_type 3 189 0 265 313 131 0 chr1 59332463 59332562 -222861102 - MIR SINE MIR -64 144 33 1171 173 15 0 chr1 59332642 59332844 -222860820 - AluJo SINE Alu -22 290 86 228 140 18 123 chr1 59333037 59333094 -222860570 - FAM SINE Alu -14 165 115 1824 121 3 21 chr1 59333048 59333337 -222860327 - AluJb SINE Alu -27 285 2 975 174 43 0 chr1 59333508 59333692 -222859972 - AluJb SINE Alu -27 285 94 522 200 0 0 chr1 59333721 59333821 -222859843 + FRAM SINE Alu 69 168 -8 476 259 135 9 chr1 59333821 59333963 -222859701 - L1ME LINE L1 -506 5615 5492 2161 87 10 23 chr1 59333963 59334273 -222859391 + AluY SINE Alu 1 306 -5 476 259 135 9 chr1 59334273 59334390 -222859274 - L1ME LINE L1 -629 5492 5300 1185 117 17 0 chr1 59334408 59334588 -222859076 - AluSg/x SINE Alu -16 294 112 190 347 89 40 chr1 59334722 59334846 -222858818 + L2 LINE L2 3125 3254 -18 1291 151 179 16 chr1 59334879 59335130 -222858534 + AluJo SINE Alu 1 292 -10 207 0 0 0 chr1 59335164 59335187 -222858477 + (CCA)n Simple_repeat Simple_repeat 1 23 0 640 258 148 4 chr1 59335558 59335787 -222857877 - MIR SINE MIR 0 262 1 2170 119 0 0 chr1 59335869 59336164 -222857500 + AluSx SINE Alu 1 295 -17 189 214 161 0 chr1 59336238 59336294 -222857370 - MIR SINE MIR -78 130 66 189 0 0 0 chr1 59336328 59336349 -222857315 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1542 185 28 0 chr1 59336349 59336636 -222857028 - AluJo SINE Alu -17 295 1 346 197 15 0 chr1 59337663 59337729 -222855935 - MIR SINE MIR -73 189 123 24 0 0 0 chr1 59338022 59338046 -222855618 + AT_rich Low_complexity Low_complexity 1 24 0 215 186 0 23 chr1 59338094 59338137 -222855527 + L2 LINE L2 1958 1999 -1315 415 320 130 37 chr1 59338150 59338450 -222855214 + L2 LINE L2 2431 2758 -556 2241 194 31 87 chr1 59338468 59338574 -222855090 - L1MC/D LINE L1 -789 5357 5247 1417 193 3 27 chr1 59338574 59338870 -222854794 - AluJb SINE Alu -21 291 3 2241 194 31 87 chr1 59338870 59338998 -222854666 - L1MC/D LINE L1 -899 5247 5113 213 39 0 0 chr1 59338998 59339024 -222854640 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1908 117 0 11 chr1 59339032 59339306 -222854358 - AluSx SINE Alu -41 271 1 2241 194 31 87 chr1 59339306 59339923 -222853741 - L1MC/D LINE L1 -1040 5106 4634 546 16 0 0 chr1 59339923 59339986 -222853678 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 913 143 14 0 chr1 59340000 59340147 -222853517 + AluJo SINE Alu 1 149 -163 313 339 18 0 chr1 59340193 59340302 -222853362 + MIR SINE MIR 33 143 -65 697 159 97 0 chr1 59340350 59340463 -222853201 + AluJb SINE Alu 168 291 -21 414 184 35 0 chr1 59340481 59340568 -222853096 - L1MC/D LINE L1 -1593 4553 4464 1462 154 4 43 chr1 59340714 59340994 -222852670 - AluJo SINE Alu -17 295 27 585 198 39 22 chr1 59340994 59341176 -222852488 - L1MC/D LINE L1 -1680 4466 4282 2391 71 0 3 chr1 59341188 59341499 -222852165 - AluY SINE Alu -1 310 1 188 322 115 11 chr1 59341604 59341691 -222851973 - L3 LINE CR1 -44 1533 1438 191 0 0 94 chr1 59341703 59341735 -222851929 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 700 330 53 0 chr1 59341847 59342132 -222851532 - L3 LINE CR1 -196 1381 1082 310 330 40 40 chr1 59342170 59342346 -222851318 + MIR3 SINE MIR 33 208 0 780 139 0 0 chr1 59342518 59342640 -222851024 + AluSg/x SINE Alu 179 300 -10 2303 76 0 7 chr1 59342646 59342949 -222850715 + AluSg1 SINE Alu 1 301 -8 304 277 20 50 chr1 59343107 59343208 -222850456 - L3 LINE CR1 -543 1034 937 2211 107 0 22 chr1 59343238 59343555 -222850109 + AluSx SINE Alu 1 310 -2 438 268 100 37 chr1 59343614 59343849 -222849815 - MIR SINE MIR 0 262 16 450 274 34 0 chr1 59344164 59344281 -222849383 + MIR3 SINE MIR 65 185 -23 366 320 16 8 chr1 59344414 59344539 -222849125 + MIR SINE MIR 118 243 -19 296 248 67 49 chr1 59344783 59344906 -222848758 + MIR SINE MIR 25 147 -61 684 276 28 23 chr1 59345415 59345632 -222848032 + MIR SINE MIR 20 237 -25 341 320 0 20 chr1 59345711 59345811 -222847853 + MIR SINE MIR 111 208 -54 352 222 71 50 chr1 59345811 59345910 -222847754 - L1ME2 LINE L1 -335 5829 5729 25 75 0 0 chr1 59346004 59346057 -222847607 + AT_rich Low_complexity Low_complexity 1 53 0 180 156 26 13 chr1 59346060 59346137 -222847527 + (TA)n Simple_repeat Simple_repeat 2 79 0 553 235 26 119 chr1 59346139 59346317 -222847347 - L1ME2 LINE L1 -526 5595 5449 1856 151 7 0 chr1 59346317 59346622 -222847042 - AluJb SINE Alu -5 307 1 553 235 26 119 chr1 59346622 59346711 -222846953 - L1ME2 LINE L1 -672 5449 5353 362 107 36 0 chr1 59346825 59346881 -222846783 + MER82 DNA MER2_type 190 247 -406 1902 151 0 19 chr1 59346914 59347232 -222846432 + AluSx SINE Alu 1 312 0 1115 253 28 21 chr1 59347232 59347517 -222846147 + MER82 DNA MER2_type 364 650 -3 225 0 0 0 chr1 59347518 59347543 -222846121 + (TG)n Simple_repeat Simple_repeat 2 26 0 1156 174 28 0 chr1 59347766 59347978 -222845686 - MER20 DNA MER1_type -1 218 1 382 289 95 5 chr1 59348093 59348304 -222845360 - L1ME2 LINE L1 -1443 4703 4474 1643 166 3 7 chr1 59348327 59348639 -222845025 + AluJb SINE Alu 1 311 0 2349 87 0 0 chr1 59348989 59349299 -222844365 - AluY SINE Alu -1 310 1 2097 104 3 0 chr1 59349303 59349592 -222844072 - AluSx SINE Alu -22 290 1 417 277 54 8 chr1 59349890 59350020 -222843644 + MIR SINE MIR 29 164 -98 414 195 0 0 chr1 59350068 59350155 -222843509 + CT-rich Low_complexity Low_complexity 3 89 0 2260 89 7 0 chr1 59350155 59350458 -222843206 - AluSg SINE Alu -5 305 1 26 0 0 0 chr1 59351281 59351307 -222842357 + AT_rich Low_complexity Low_complexity 1 26 0 1807 118 34 27 chr1 59351307 59351603 -222842061 + AluSx SINE Alu 1 298 -14 1726 179 0 3 chr1 59351909 59352205 -222841459 - AluJb SINE Alu -11 301 7 769 162 0 8 chr1 59352254 59352371 -222841293 - FLAM_C SINE Alu -25 118 3 3852 194 71 14 chr1 59352534 59353309 -222840355 - MER21B LTR ERV1 -24 839 21 287 225 67 22 chr1 59353310 59353399 -222840265 - MER21B LTR ERV1 -758 105 13 497 139 13 13 chr1 59353470 59353549 -222840115 - AluS SINE Alu -233 80 2 1940 130 0 3 chr1 59353942 59354234 -222839430 + AluJb SINE Alu 1 291 -21 1370 91 0 0 chr1 59354368 59354543 -222839121 - AluSc SINE Alu -134 175 1 1453 106 10 0 chr1 59354588 59354796 -222838868 - AluSq SINE Alu -13 300 91 817 167 7 7 chr1 59354804 59354948 -222838716 - AluSq/x SINE Alu -169 144 1 252 384 17 12 chr1 59354988 59355160 -222838504 + L2 LINE L2 2811 2983 -289 385 385 56 18 chr1 59355197 59355537 -222838127 + L2 LINE L2 2839 3191 -81 1290 95 0 6 chr1 59355542 59355721 -222837943 - AluY SINE Alu -4 307 130 626 230 24 127 chr1 59356100 59356222 -222837442 + MIR SINE MIR 3 89 -173 1944 109 11 0 chr1 59356222 59356522 -222837142 - AluSg SINE Alu 0 303 1 626 230 24 127 chr1 59356522 59356649 -222837015 + MIR SINE MIR 89 228 -34 1917 148 3 0 chr1 59356650 59356961 -222836703 + AluSx SINE Alu 1 312 0 2259 89 0 16 chr1 59357552 59357856 -222835808 - AluSx SINE Alu -13 299 1 323 289 56 0 chr1 59358163 59358253 -222835411 - L2 LINE L2 -32 3240 3146 1011 168 12 6 chr1 59358316 59358489 -222835175 + FAM SINE Alu 1 43 -6 355 310 60 69 chr1 59358549 59358589 -222835075 - L2 LINE L2 -218 3054 3015 2302 78 3 0 chr1 59358589 59358908 -222834756 - AluSp SINE Alu 0 320 1 355 310 60 69 chr1 59358908 59359097 -222834567 - L2 LINE L2 -257 3015 2825 2108 88 0 23 chr1 59359653 59359959 -222833705 + AluSg1 SINE Alu 1 299 -10 210 393 27 0 chr1 59360007 59360119 -222833545 - L2 LINE L2 -26 3287 3173 346 273 61 0 chr1 59360461 59360560 -222833104 + MIR3 SINE MIR 95 199 -9 200 323 0 0 chr1 59360565 59360627 -222833037 - MER5A DNA MER1_type 0 189 128 647 130 130 9 chr1 59360630 59360738 -222832926 + FLAM_A SINE Alu 1 121 -21 2070 124 0 0 chr1 59360752 59361042 -222832622 + AluSq SINE Alu 1 290 -23 407 276 0 0 chr1 59361066 59361164 -222832500 - MER5A DNA MER1_type -83 106 9 2152 76 7 0 chr1 59361253 59361530 -222832134 + AluSp SINE Alu 1 279 -34 1823 169 0 0 chr1 59361663 59361959 -222831705 - AluJo SINE Alu -16 296 1 202 216 0 137 chr1 59362058 59362160 -222831504 - MIR SINE MIR -118 144 57 2295 88 0 7 chr1 59362203 59362511 -222831153 - AluSg1 SINE Alu -3 306 1 2153 116 3 0 chr1 59362530 59362832 -222830832 - AluSq SINE Alu -10 303 1 957 134 0 0 chr1 59362841 59362983 -222830681 - AluSg/x SINE Alu -22 288 147 272 299 14 0 chr1 59362998 59363079 -222830585 + MIR SINE MIR 63 140 -68 240 225 70 0 chr1 59363622 59363696 -222829968 + MIR SINE MIR 80 122 -86 371 143 48 0 chr1 59363698 59363761 -222829903 + AluS SINE Alu 1 66 -237 3397 204 63 18 chr1 59363761 59364963 -222828701 + L1ME1 LINE L1 4902 6154 -12 191 265 88 0 chr1 59365077 59365145 -222828519 - L2 LINE L2 -1 3312 3239 199 171 0 24 chr1 59365225 59365266 -222828398 - L2 LINE L2 -338 2976 2937 1550 107 36 0 chr1 59365266 59365490 -222828174 + AluSg SINE Alu 57 288 -22 191 229 0 0 chr1 59365687 59365722 -222827942 - L2 LINE L2 -104 3168 3134 316 313 111 49 chr1 59365738 59365981 -222827683 - MIR SINE MIR -1 261 4 2374 69 0 10 chr1 59366671 59366975 -222826689 + AluSq SINE Alu 1 301 -12 2101 102 0 20 chr1 59367566 59367869 -222825795 - AluSg SINE Alu -13 297 1 2785 16 0 0 chr1 59367969 59368286 -222825378 - AluYb8 SINE Alu 0 318 2 237 108 0 0 chr1 59368288 59368325 -222825339 + (T)n Simple_repeat Simple_repeat 1 37 0 587 103 0 0 chr1 59368434 59368512 -222825152 - MER30B DNA MER1_type -112 78 1 1025 73 7 7 chr1 59368542 59368678 -222824986 + AluSq/x SINE Alu 1 136 -176 2038 115 0 7 chr1 59368678 59368974 -222824690 + AluY SINE Alu 1 294 -17 214 348 103 32 chr1 59368994 59369149 -222824515 - L2 LINE L2 -448 2866 2701 1018 221 82 21 chr1 59369234 59369564 -222824100 - HAL1b LINE L1 -64 1284 935 604 126 0 0 chr1 59369568 59369715 -222823949 - AluSg/x SINE Alu 0 340 194 1780 107 33 53 chr1 59369759 59370058 -222823606 + AluSx SINE Alu 1 293 -19 1712 167 14 0 chr1 59370067 59370355 -222823309 + AluJo SINE Alu 1 292 -20 1704 87 4 0 chr1 59370456 59370686 -222822978 + AluSg/x SINE Alu 72 302 -10 673 282 115 8 chr1 59370776 59371010 -222822654 - MIR SINE MIR 0 262 4 2155 101 0 0 chr1 59371413 59371699 -222821965 - AluSx SINE Alu -26 286 1 263 294 0 15 chr1 59371820 59371888 -222821776 - MIR SINE MIR 0 262 196 193 219 49 0 chr1 59372004 59372045 -222821619 - MIR SINE MIR -72 136 94 368 329 7 7 chr1 59372047 59372193 -222821471 + MARNA DNA Mariner 256 401 -185 1876 134 3 10 chr1 59372306 59372597 -222821067 - AluSx SINE Alu -20 292 4 372 184 2 2 chr1 59372622 59372687 -222820977 + AluSx SINE Alu 2 58 -242 1654 124 19 8 chr1 59372787 59373054 -222820610 + AluSx SINE Alu 36 305 -7 538 240 62 57 chr1 59373555 59373712 -222819952 + MIR SINE MIR 57 217 -45 1749 122 64 7 chr1 59373712 59374007 -222819657 + AluSx SINE Alu 1 312 0 538 240 62 57 chr1 59374007 59374041 -222819623 + MIR SINE MIR 217 249 -13 337 324 9 0 chr1 59374219 59374330 -222819334 - MIR3 SINE MIR -23 185 74 1844 121 3 21 chr1 59374342 59374631 -222819033 + AluSx SINE Alu 13 296 -16 1990 90 31 68 chr1 59374707 59375028 -222818636 + AluSp SINE Alu 1 309 -4 1548 134 116 11 chr1 59375136 59375412 -222818252 + AluSx SINE Alu 1 305 -7 1991 97 18 0 chr1 59375846 59376124 -222817540 - AluSq SINE Alu -22 291 9 379 339 51 28 chr1 59376133 59376310 -222817354 - L2 LINE L2 -2 3270 3090 828 92 0 0 chr1 59376437 59376546 -222817118 + AluSq/x SINE Alu 3 111 -201 1728 136 25 18 chr1 59376728 59376864 -222816800 + AluSx SINE Alu 1 135 -169 2401 83 0 0 chr1 59376864 59377176 -222816488 + AluSx SINE Alu 1 312 0 1728 136 25 18 chr1 59377176 59377341 -222816323 + AluSx SINE Alu 135 304 0 304 258 30 0 chr1 59377346 59377412 -222816252 - L2 LINE L2 -5 3308 3241 213 185 169 15 chr1 59377428 59377493 -222816171 - MER91B DNA MER1_type -115 75 1 1803 113 0 4 chr1 59377819 59378075 -222815589 + AluSx SINE Alu 41 295 -17 2243 62 14 0 chr1 59378288 59378580 -222815084 + AluSp SINE Alu 1 296 -17 2191 117 0 0 chr1 59378588 59378897 -222814767 + AluSp SINE Alu 1 309 -4 225 0 0 0 chr1 59379097 59379122 -222814542 + (A)n Simple_repeat Simple_repeat 1 25 0 293 214 2 0 chr1 59379218 59379278 -222814386 + L1ME LINE L1 5518 5570 -551 2010 80 38 17 chr1 59379559 59379847 -222813817 + AluY SINE Alu 2 295 -16 358 121 0 2 chr1 59379870 59379947 -222813717 + AluSp/q SINE Alu 236 306 0 2104 117 3 0 chr1 59379947 59380245 -222813419 + AluSx SINE Alu 2 300 -12 311 241 0 58 chr1 59380853 59380940 -222812724 - MIR SINE MIR -71 191 110 2195 65 10 14 chr1 59380959 59381249 -222812415 - AluSc SINE Alu -20 289 1 273 309 0 0 chr1 59381300 59381381 -222812283 + MIR SINE MIR 77 157 -105 1822 123 39 9 chr1 59381381 59381573 -222812091 - Tigger3(Golem) DNA MER2_type 0 3028 2843 2194 110 0 13 chr1 59381573 59381883 -222811781 + AluSx SINE Alu 1 306 -6 1822 123 39 9 chr1 59381883 59382091 -222811573 - Tigger3(Golem) DNA MER2_type -185 2843 2558 1109 181 0 25 chr1 59382108 59382312 -222811352 - AluJo SINE Alu -45 267 69 298 105 26 53 chr1 59382314 59382390 -222811274 - Tigger3(Golem) DNA MER2_type -461 2568 2495 2065 56 12 9 chr1 59382390 59382560 -222811104 - SVA Other Other 0 1386 1218 336 0 0 0 chr1 59382560 59382597 -222811067 - LTR5 LTR ERVK -686 283 247 2065 56 12 9 chr1 59382597 59382920 -222810744 - SVA Other Other -168 1218 700 311 124 214 0 chr1 59382923 59382953 -222810711 - Tigger3(Golem) DNA MER2_type -496 2533 2511 2392 51 0 0 chr1 59382953 59383249 -222810415 - AluY SINE Alu -15 296 1 311 124 214 0 chr1 59383249 59383307 -222810357 - Tigger3(Golem) DNA MER2_type -518 2511 2426 1793 157 23 3 chr1 59383334 59383634 -222810030 - AluJb SINE Alu -6 306 1 1068 275 8 4 chr1 59383852 59384103 -222809561 + MIR SINE MIR 1 252 -10 427 265 77 0 chr1 59384107 59384224 -222809440 + L2 LINE L2 3188 3313 0 2313 96 0 3 chr1 59384481 59384793 -222808871 - AluSx SINE Alu 0 312 2 769 191 113 65 chr1 59384922 59385031 -222808633 - AluJb SINE Alu -70 242 140 2082 124 3 0 chr1 59385031 59385330 -222808334 - AluSx SINE Alu -12 300 1 769 191 113 65 chr1 59385330 59385450 -222808214 - AluJb SINE Alu -172 140 2 916 214 214 45 chr1 59385671 59386007 -222807657 + L2 LINE L2 1913 2305 -1009 843 99 0 0 chr1 59386033 59386144 -222807520 + AluJo/FLAM SINE Alu 1 111 -201 2061 116 0 0 chr1 59386147 59386439 -222807225 + AluSx SINE Alu 16 307 -5 378 44 0 0 chr1 59386519 59386564 -222807100 + AluY SINE Alu 1 45 -256 2024 116 0 10 chr1 59386659 59386952 -222806712 + AluSp SINE Alu 3 292 -21 1875 136 0 11 chr1 59386989 59387276 -222806388 + AluSx SINE Alu 18 301 -11 2230 108 0 0 chr1 59387651 59387958 -222805706 + AluSx SINE Alu 1 307 -5 234 62 0 0 chr1 59388205 59388237 -222805427 + (CAA)n Simple_repeat Simple_repeat 2 33 0 816 175 0 0 chr1 59388379 59388522 -222805142 - FLAM_C SINE Alu 0 143 1 2011 140 0 0 chr1 59388525 59388825 -222804839 - AluSx SINE Alu -10 302 3 6115 126 33 18 chr1 59388835 59389977 -222803687 - L1MA5A LINE L1 -4 6293 5170 1782 162 10 3 chr1 59389977 59390273 -222803391 - AluJb SINE Alu -14 298 1 6115 126 33 18 chr1 59390273 59390337 -222803327 - L1MA5A LINE L1 -1127 5170 5108 2260 100 0 3 chr1 59390337 59390646 -222803018 - AluSq SINE Alu -5 308 1 6115 126 33 18 chr1 59390646 59391155 -222802509 - L1MA5A LINE L1 -1189 5108 4557 364 169 0 28 chr1 59391178 59391249 -222802415 - AluJ/FRAM SINE Alu -6 296 228 775 186 0 0 chr1 59391259 59391383 -222802281 - FLAM_C SINE Alu -18 125 2 1937 116 3 38 chr1 59391879 59392200 -222801464 - AluSx SINE Alu 0 311 1 520 288 73 23 chr1 59392221 59392398 -222801266 + MIR SINE MIR 20 205 -57 427 312 105 32 chr1 59392380 59392627 -222801037 - L2 LINE L2 -67 3246 2982 * 859 149 0 15 chr1 59392818 59392952 -222800712 - FLAM_C SINE Alu -1 132 1 24 0 0 0 chr1 59392956 59392980 -222800684 + AT_rich Low_complexity Low_complexity 1 24 0 1484 179 36 14 chr1 59392980 59393260 -222800404 - AluJo SINE Alu -24 288 3 1480 184 36 26 chr1 59393260 59393565 -222800099 - AluJo SINE Alu -1 311 4 1486 189 130 80 chr1 59393567 59393875 -222799789 - L1MDa LINE L1 -4960 1580 1289 1883 105 0 18 chr1 59393875 59394151 -222799513 - AluSg SINE Alu -6 304 34 1486 189 130 80 chr1 59394151 59394466 -222799198 - L1MDa LINE L1 -5251 1289 926 2356 66 0 3 chr1 59394492 59394795 -222798869 + AluY SINE Alu 1 302 -9 805 123 8 23 chr1 59394798 59394928 -222798736 + Tigger2 DNA MER2_type 1 128 -2590 749 242 91 17 chr1 59395061 59395292 -222798372 + MER21B LTR ERV1 605 852 -11 730 219 32 13 chr1 59395383 59395538 -222798126 - MER21B LTR ERV1 -685 178 21 2206 93 0 10 chr1 59395547 59395848 -222797816 - AluSx SINE Alu -14 298 1 26 0 0 0 chr1 59395858 59395884 -222797780 + AT_rich Low_complexity Low_complexity 1 26 0 749 183 44 135 chr1 59395884 59396113 -222797551 + MIR SINE MIR 54 261 -1 202 225 141 14 chr1 59396240 59396311 -222797353 + L2 LINE L2 3232 3311 -2 272 341 81 8 chr1 59396316 59396439 -222797225 + L2 LINE L2 3139 3270 -2 615 294 97 54 chr1 59397025 59397158 -222796506 - L2 LINE L2 -50 3263 3137 2477 50 0 0 chr1 59397158 59397461 -222796203 + AluY SINE Alu 1 303 -8 615 294 97 54 chr1 59397461 59397718 -222795946 - L2 LINE L2 -176 3137 2856 520 186 159 0 chr1 59397783 59397896 -222795768 - FLAM_C SINE Alu -2 131 1 1211 119 0 0 chr1 59397899 59398076 -222795588 - AluSg/x SINE Alu -8 304 128 708 217 71 43 chr1 59398245 59398364 -222795300 + MER5A DNA MER1_type 1 115 -74 624 41 21 10 chr1 59398364 59398461 -222795203 + (TG)n Simple_repeat Simple_repeat 1 98 0 1697 188 7 0 chr1 59398461 59398754 -222794910 - 7SLRNA srpRNA srpRNA -25 295 1 708 217 71 43 chr1 59398754 59398817 -222794847 + MER5A DNA MER1_type 114 189 0 448 296 59 23 chr1 59398839 59399059 -222794605 + L2 LINE L2 678 905 -2409 1418 120 10 0 chr1 59399064 59399272 -222794392 - AluSg/x SINE Alu -18 292 83 842 234 102 42 chr1 59399272 59399537 -222794127 - Charlie2 DNA MER1_type -2494 288 8 3340 146 7 70 chr1 59399592 59399714 -222793950 - L1MB7 LINE L1 -26 6158 6030 1469 176 0 8 chr1 59399714 59399976 -222793688 - AluJb SINE Alu -27 285 26 3340 146 7 70 chr1 59399976 59400326 -222793338 - L1MB7 LINE L1 -154 6030 5620 2106 120 0 0 chr1 59400326 59400617 -222793047 - AluSg SINE Alu -19 291 1 3340 146 7 70 chr1 59400617 59400847 -222792817 - L1MB7 LINE L1 -564 5620 5377 1586 89 0 0 chr1 59400871 59401073 -222792591 - AluSc SINE Alu -107 202 1 1446 106 10 0 chr1 59401118 59401325 -222792339 - AluSq SINE Alu -14 299 91 817 167 7 7 chr1 59401333 59401477 -222792187 - AluSq/x SINE Alu -169 144 1 252 384 17 12 chr1 59401517 59401689 -222791975 + L2 LINE L2 2811 2983 -289 385 385 56 18 chr1 59401726 59402066 -222791598 + L2 LINE L2 2839 3191 -81 1307 89 0 6 chr1 59402071 59402250 -222791414 - AluY SINE Alu -4 307 130 426 267 25 33 chr1 59402629 59402749 -222790915 + MIR SINE MIR 3 121 -141 1944 109 11 0 chr1 59402751 59403051 -222790613 - AluSg SINE Alu 0 303 1 424 313 168 5 chr1 59403054 59403268 -222790396 + L2 LINE L2 2716 2964 -350 32 26 0 0 chr1 59403295 59403334 -222790330 + AT_rich Low_complexity Low_complexity 1 39 0 1558 117 32 67 chr1 59403507 59403582 -222790082 - L1PB4 LINE L1 -4 6152 6076 1871 101 4 7 chr1 59403582 59403858 -222789806 - AluSp SINE Alu -9 304 30 1558 117 32 67 chr1 59403858 59404065 -222789599 - L1PB4 LINE L1 -80 6076 5880 467 229 171 65 chr1 59404065 59404235 -222789429 + L2 LINE L2 3126 3313 0 1959 100 9 91 chr1 59404429 59404769 -222788895 - AluSx SINE Alu 0 312 1 583 277 88 34 chr1 59405472 59405710 -222787954 + MIR SINE MIR 3 253 -9 2250 189 57 41 chr1 59405779 59406291 -222787373 - MLT1F1 LTR MaLR -47 520 1 2252 96 0 13 chr1 59406291 59406603 -222787061 + AluSg SINE Alu 1 308 -2 234 338 110 32 chr1 59406623 59406777 -222786887 - L2 LINE L2 -448 2866 2701 207 329 26 0 chr1 59407377 59407453 -222786211 - L2 LINE L2 -219 3053 2976 497 278 24 58 chr1 59408106 59408311 -222785353 - L2 LINE L2 -21 3292 3095 440 155 56 0 chr1 59408294 59408365 -222785299 - MIR SINE MIR -169 93 19 * 381 276 9 29 chr1 59408464 59408569 -222785095 - L2 LINE L2 -2 3270 3168 2310 88 0 7 chr1 59408878 59409185 -222784479 + AluSg SINE Alu 1 305 -5 1005 142 111 26 chr1 59409418 59409608 -222784056 + MER20 DNA MER1_type 1 206 -13 1112 191 4 35 chr1 59409803 59410034 -222783630 + AluJo SINE Alu 1 224 -88 254 315 234 0 chr1 59410216 59410327 -222783337 - L2 LINE L2 0 3272 3136 230 374 6 16 chr1 59410452 59410634 -222783030 + (TG)n Simple_repeat Simple_repeat 1 180 0 276 209 158 124 chr1 59411879 59412056 -222781608 + MER5A DNA MER1_type 6 188 -1 718 173 0 8 chr1 59412159 59412286 -222781378 - MER5B DNA MER1_type 0 178 53 478 186 88 18 chr1 59412850 59412963 -222780701 + MIR SINE MIR 132 252 -10 271 248 29 58 chr1 59413079 59413216 -222780448 - L1ME4a LINE L1 -1 6120 5988 999 98 0 0 chr1 59413273 59413406 -222780258 + AluSq/x SINE Alu 1 133 -179 2456 56 0 0 chr1 59413409 59413712 -222779952 + AluY SINE Alu 1 303 -8 426 323 124 19 chr1 59413712 59413969 -222779695 - L2 LINE L2 -174 3139 2856 520 186 159 0 chr1 59414034 59414147 -222779517 - FLAM_C SINE Alu -2 131 1 2122 116 3 0 chr1 59414150 59414453 -222779211 - AluSx SINE Alu -8 304 1 806 139 0 49 chr1 59414484 59414628 -222779036 + FLAM_C SINE Alu 6 142 -1 2132 89 10 0 chr1 59414809 59415100 -222778564 + AluSq SINE Alu 1 294 -19 182 338 0 0 chr1 59415315 59415386 -222778278 - L2 LINE L2 -494 2820 2750 262 297 40 0 chr1 59415524 59415625 -222778039 + L2 LINE L2 2599 2703 -611 1038 151 0 0 chr1 59415795 59415961 -222777703 - AluSg/x SINE Alu -10 300 135 2278 104 0 0 chr1 59415961 59416268 -222777396 - AluSx SINE Alu -5 307 1 459 296 174 5 chr1 59416271 59416484 -222777180 + L2 LINE L2 2716 2964 -350 32 26 0 0 chr1 59416511 59416550 -222777114 + AT_rich Low_complexity Low_complexity 1 39 0 1562 117 32 64 chr1 59416723 59416798 -222776866 - L1PB4 LINE L1 -4 6152 6076 2008 83 4 7 chr1 59416798 59417074 -222776590 - AluSp SINE Alu -9 304 30 1562 117 32 64 chr1 59417074 59417280 -222776384 - L1PB4 LINE L1 -80 6076 5880 467 229 171 65 chr1 59417280 59417450 -222776214 + L2 LINE L2 3126 3313 0 1959 100 9 91 chr1 59417644 59417984 -222775680 - AluSx SINE Alu 0 312 1 583 277 88 34 chr1 59418687 59418925 -222774739 + MIR SINE MIR 3 253 -9 2250 189 57 41 chr1 59418994 59419506 -222774158 - MLT1F1 LTR MaLR -47 520 1 2026 113 11 0 chr1 59419506 59419789 -222773875 + AluSx SINE Alu 1 286 -26 673 282 115 8 chr1 59420192 59420426 -222773238 + MIR SINE MIR 4 262 0 2251 87 3 0 chr1 59420516 59420815 -222772849 - AluSg SINE Alu -10 300 1 2122 123 3 0 chr1 59421032 59421341 -222772323 - AluSx SINE Alu -2 310 1 1264 165 132 29 chr1 59421424 59421697 -222771967 + AluJo SINE Alu 3 303 -9 1111 160 11 0 chr1 59421737 59421925 -222771739 + AluJb SINE Alu 121 310 -2 311 279 13 13 chr1 59422356 59422435 -222771229 - L2 LINE L2 0 3313 3235 1726 135 0 0 chr1 59422679 59422931 -222770733 + AluSx SINE Alu 45 296 -16 2234 86 3 13 chr1 59422931 59423233 -222770431 + AluSp SINE Alu 1 300 -13 1681 234 108 11 chr1 59423233 59423474 -222770190 + L1MB8 LINE L1 4630 4846 -1300 2329 66 0 10 chr1 59423474 59423778 -222769886 + AluY SINE Alu 1 301 -10 1681 234 108 11 chr1 59423778 59424057 -222769607 + L1MB8 LINE L1 4846 5200 -946 1837 147 0 0 chr1 59424057 59424350 -222769314 + AluSq SINE Alu 5 297 -16 454 0 0 0 chr1 59424357 59424408 -222769256 - U2 snRNA snRNA -132 56 6 1916 110 43 0 chr1 59424421 59424702 -222768962 + AluSx SINE Alu 1 293 -19 1880 123 29 16 chr1 59424711 59424839 -222768825 + AluSx SINE Alu 1 126 -186 2345 85 3 0 chr1 59424839 59425146 -222768518 + AluSp SINE Alu 1 308 -5 1880 123 29 16 chr1 59425146 59425325 -222768339 + AluSx SINE Alu 126 312 0 1201 163 73 4 chr1 59425351 59425584 -222768080 + L1MB8 LINE L1 5485 5733 -445 1927 133 0 23 chr1 59425589 59425889 -222767775 + AluSg SINE Alu 1 293 -17 945 221 117 40 chr1 59425906 59426205 -222767459 - MER21B LTR ERV1 -51 812 491 2371 217 61 30 chr1 59426209 59426831 -222766833 + MER21B LTR ERV1 212 852 -11 730 219 32 13 chr1 59426923 59427078 -222766586 - MER21B LTR ERV1 -685 178 21 2139 98 0 10 chr1 59427087 59427382 -222766282 - AluSx SINE Alu -14 298 7 226 89 0 89 chr1 59427414 59427459 -222766205 + L1MB8 LINE L1 5729 5769 -415 1376 150 154 0 chr1 59427473 59427726 -222765938 + AluJb SINE Alu 5 296 -16 2205 137 31 40 chr1 59427729 59428153 -222765511 + L1MB8 LINE L1 5758 6177 -1 2198 114 0 0 chr1 59428163 59428462 -222765202 + AluSq SINE Alu 1 299 -14 887 182 0 0 chr1 59428474 59428644 -222765020 + AluSg/x SINE Alu 135 304 -6 185 114 0 91 chr1 59428703 59428747 -222764917 - L3 LINE CR1 -35 1542 1503 364 171 18 90 chr1 59428772 59428883 -222764781 + L1MC5 LINE L1 6925 7027 -934 790 86 0 2 chr1 59428887 59429143 -222764521 + AluSq SINE Alu 5 311 -2 2042 120 6 16 chr1 59429501 59429817 -222763847 - AluSq SINE Alu 0 313 1 717 132 9 0 chr1 59429818 59429924 -222763740 - AluSg/x SINE Alu -14 295 189 1588 105 9 0 chr1 59429927 59430155 -222763509 - AluSx SINE Alu -82 230 1 184 333 76 0 chr1 59430158 59430224 -222763440 + L2 LINE L2 3000 3070 -202 264 299 207 29 chr1 59430263 59430437 -222763227 - MIR SINE MIR 0 262 58 339 311 128 43 chr1 59430444 59430679 -222762985 - MIR SINE MIR -1 261 7 1022 249 8 21 chr1 59430727 59430964 -222762700 - MIR SINE MIR -27 235 2 263 339 70 9 chr1 59431167 59431282 -222762382 - MIR SINE MIR -136 126 5 362 317 56 7 chr1 59431601 59431788 -222761876 - MIR SINE MIR -57 205 10 216 0 0 0 chr1 59432021 59432045 -222761619 + (A)n Simple_repeat Simple_repeat 1 24 0 905 92 130 92 chr1 59432412 59432520 -222761144 + MER30 DNA MER1_type 16 118 -112 2167 99 0 0 chr1 59432520 59432813 -222760851 + AluSg SINE Alu 1 293 -17 905 92 130 92 chr1 59432813 59432911 -222760753 + MER30 DNA MER1_type 118 230 0 279 197 268 35 chr1 59432911 59433053 -222760611 + MER2 DNA MER2_type 152 326 -19 259 250 111 0 chr1 59433077 59433149 -222760515 - MIR SINE MIR -49 213 134 648 205 74 0 chr1 59433278 59433400 -222760264 - FLAM_C SINE Alu -2 131 1 1802 142 7 20 chr1 59433426 59433729 -222759935 + AluJb SINE Alu 1 299 -13 2312 64 0 3 chr1 59435226 59435523 -222758141 + AluY SINE Alu 1 296 -15 2106 124 0 3 chr1 59435808 59436107 -222757557 + AluSx SINE Alu 1 298 -14 2032 115 3 0 chr1 59436110 59436396 -222757268 + AluSg SINE Alu 1 287 -23 5950 136 51 24 chr1 59436425 59437520 -222756144 + L1MC1 LINE L1 5220 6331 -2 3109 136 103 80 chr1 59437513 59437693 -222755971 + L1MB2 LINE L1 5425 5599 -572 * 2023 104 163 29 chr1 59437693 59438067 -222755597 - MSTA LTR MaLR 0 428 5 3109 136 103 80 chr1 59438067 59438447 -222755217 + L1MB2 LINE L1 5599 5969 -202 2075 134 0 0 chr1 59438447 59438752 -222754912 - AluJo SINE Alu -7 305 1 3109 136 103 80 chr1 59438752 59438875 -222754789 + L1MB2 LINE L1 5969 6129 -42 1642 106 0 0 chr1 59438875 59439101 -222754563 + AluSg/x SINE Alu 83 308 -2 3109 136 103 80 chr1 59439101 59439145 -222754519 + L1MB2 LINE L1 6129 6171 0 2061 108 34 0 chr1 59439330 59439626 -222754038 - AluSx SINE Alu -6 306 1 1957 128 0 3 chr1 59439661 59439950 -222753714 - AluJo SINE Alu -13 299 12 2276 86 3 0 chr1 59440015 59440307 -222753357 - AluSp SINE Alu -20 293 1 1984 100 20 27 chr1 59440795 59441095 -222752569 - AluSx SINE Alu -14 298 1 285 299 149 60 chr1 59441184 59441552 -222752112 - L2 LINE L2 -525 2789 2389 2135 54 37 37 chr1 59441809 59442107 -222751557 - AluY SINE Alu -13 298 1 470 241 66 15 chr1 59442277 59442414 -222751250 + MIR SINE MIR 46 189 -73 270 0 0 0 chr1 59442989 59443019 -222750645 + (TC)n Simple_repeat Simple_repeat 1 30 0 563 168 112 0 chr1 59443024 59443149 -222750515 + L1MA9 LINE L1 6152 6290 -22 346 262 56 9 chr1 59443367 59443474 -222750190 + L2 LINE L2 2970 3081 -191 1946 123 13 26 chr1 59443528 59443836 -222749828 - AluSx SINE Alu -6 306 3 604 164 9 36 chr1 59443842 59443952 -222749712 - FLAM_C SINE Alu -12 131 25 213 328 0 0 chr1 59444049 59444107 -222749557 + L2 LINE L2 3203 3260 -12 186 43 0 0 chr1 59444107 59444130 -222749534 + (GGGAA)n Simple_repeat Simple_repeat 3 25 0 389 257 40 59 chr1 59444230 59444382 -222749282 + MIR SINE MIR 99 247 -15 753 269 67 55 chr1 59444387 59444640 -222749024 + L3 LINE CR1 1261 1516 -61 219 320 41 31 chr1 59444735 59444832 -222748832 - L2 LINE L2 -24 3248 3151 278 296 74 19 chr1 59444890 59445013 -222748651 - MIR SINE MIR -67 141 28 495 258 172 19 chr1 59445456 59445665 -222747999 - MIR SINE MIR -2 260 20 1513 142 3 147 chr1 59445747 59446100 -222747564 + AluJo SINE Alu 1 302 0 2080 105 0 0 chr1 59446106 59446391 -222747273 + AluSq SINE Alu 1 285 -28 793 176 135 0 chr1 59446763 59446911 -222746753 + MER45A DNA AcHobo 2 169 -9 216 390 0 20 chr1 59447110 59447210 -222746454 + L3 LINE CR1 1297 1394 -183 206 231 0 0 chr1 59447281 59447320 -222746344 - MIR SINE MIR -17 245 207 1999 123 3 7 chr1 59447342 59447643 -222746021 + AluSx SINE Alu 1 300 -12 953 186 74 105 chr1 59447650 59447815 -222745849 + MIR SINE MIR 13 169 -93 1700 160 18 3 chr1 59447815 59448097 -222745567 + AluJb SINE Alu 1 286 -26 953 186 74 105 chr1 59448097 59448189 -222745475 + MIR SINE MIR 169 262 0 544 258 22 71 chr1 59448146 59448328 -222745336 - MIR SINE MIR -34 228 56 * 180 291 18 18 chr1 59448364 59448419 -222745245 + L2 LINE L2 3218 3272 0 1742 123 38 10 chr1 59449099 59449391 -222744273 + AluSp SINE Alu 1 300 -13 840 145 69 21 chr1 59449391 59449536 -222744128 + AluJb SINE Alu 134 285 -27 316 210 16 0 chr1 59449536 59449598 -222744066 + L1MC4 LINE L1 6641 6703 -1339 447 209 36 93 chr1 59449761 59449838 -222743826 - MIR SINE MIR 0 262 195 2108 93 3 7 chr1 59449838 59450147 -222743517 + AluSx SINE Alu 1 312 0 447 209 36 93 chr1 59450147 59450208 -222743456 - MIR SINE MIR -67 195 132 2189 88 10 0 chr1 59450574 59450868 -222742796 - AluSp SINE Alu -16 297 1 680 186 9 0 chr1 59450903 59451016 -222742648 + MER81 DNA DNA 1 114 0 1928 129 3 28 chr1 59451386 59451704 -222741960 - AluSx SINE Alu -2 310 1 2161 110 0 0 chr1 59452301 59452600 -222741064 - AluSx SINE Alu -11 301 3 184 221 143 52 chr1 59452634 59452711 -222740953 + L2 LINE L2 3169 3252 -20 850 106 8 0 chr1 59452720 59452843 -222740821 + FLAM_C SINE Alu 11 134 -9 406 278 52 72 chr1 59453407 59453601 -222740063 - L2 LINE L2 -93 3179 2990 270 327 85 36 chr1 59454055 59454220 -222739444 + MIR3 SINE MIR 32 204 -4 466 271 114 12 chr1 59454271 59454437 -222739227 + MIR SINE MIR 14 196 -66 396 138 0 0 chr1 59454448 59454513 -222739151 + (ATGGTG)n Simple_repeat Simple_repeat 4 68 0 303 167 211 11 chr1 59454752 59454842 -222738822 + MIR SINE MIR 75 182 -80 230 200 100 0 chr1 59454848 59454908 -222738756 + LTR67 LTR ERVL 2 67 -490 325 195 0 161 chr1 59455200 59455318 -222738346 + LTR67 LTR ERVL 459 557 0 288 246 72 0 chr1 59455413 59455482 -222738182 - MIR SINE MIR -80 128 55 198 0 0 0 chr1 59455509 59455531 -222738133 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2008 117 0 0 chr1 59455531 59455814 -222737850 - AluSx SINE Alu -29 283 1 202 222 173 12 chr1 59455935 59456016 -222737648 - MIR SINE MIR -85 123 30 1588 137 4 0 chr1 59456945 59457186 -222736478 + AluJb SINE Alu 51 292 -20 2209 72 0 20 chr1 59457192 59457325 -222736339 + AluY SINE Alu 5 139 -172 2384 57 0 10 chr1 59457325 59457626 -222736038 + AluSp SINE Alu 1 298 -15 2209 72 0 20 chr1 59457626 59457796 -222735868 + AluY SINE Alu 139 302 -9 28 0 0 0 chr1 59457796 59457824 -222735840 + AT_rich Low_complexity Low_complexity 1 28 0 2312 91 0 0 chr1 59458189 59458498 -222735166 - AluSq SINE Alu -4 309 1 297 287 33 27 chr1 59458611 59458754 -222734910 + MIR SINE MIR 7 153 -62 345 359 35 14 chr1 59459087 59459232 -222734432 + L2 LINE L2 3102 3249 -23 1818 139 0 20 chr1 59459331 59459654 -222734010 + AluSx SINE Alu 5 312 0 2253 78 0 3 chr1 59459932 59460228 -222733436 - AluSx SINE Alu -17 295 1 464 308 70 53 chr1 59460740 59461087 -222732577 + L2 LINE L2 2722 3072 -200 1051 128 27 27 chr1 59461836 59462023 -222731641 + MER5A DNA MER1_type 3 189 0 266 322 227 26 chr1 59462311 59462615 -222731049 + L2 LINE L2 2890 3254 -18 1291 151 179 16 chr1 59462648 59462899 -222730765 + AluJo SINE Alu 1 292 -10 234 0 0 0 chr1 59462931 59462957 -222730707 + (CCA)n Simple_repeat Simple_repeat 1 26 0 640 258 148 4 chr1 59463325 59463554 -222730110 - MIR SINE MIR 0 262 1 2007 94 0 52 chr1 59463636 59463944 -222729720 + AluSx SINE Alu 1 292 -20 479 153 0 0 chr1 59464022 59464107 -222729557 + AluJ/FRAM SINE Alu 223 307 -5 276 218 28 133 chr1 59464109 59464352 -222729312 + MIR3 SINE MIR 21 207 -1 1698 157 0 0 chr1 59464355 59464623 -222729041 - AluSx SINE Alu -44 268 1 2024 126 0 7 chr1 59464815 59465108 -222728556 - AluSx SINE Alu -21 291 1 891 131 0 0 chr1 59465108 59465238 -222728426 - AluSq/x SINE Alu -177 135 6 2140 103 0 10 chr1 59465417 59465719 -222727945 - AluSg SINE Alu -11 299 1 1805 164 0 10 chr1 59465824 59466134 -222727530 - AluJb SINE Alu -4 308 2 2109 120 0 0 chr1 59466307 59466606 -222727058 - AluSx SINE Alu -13 299 1 858 99 42 35 chr1 59466786 59466928 -222726736 + FLAM_C SINE Alu 1 143 0 414 139 56 14 chr1 59467253 59467325 -222726339 + MER5A DNA MER1_type 55 129 -60 453 51 26 13 chr1 59467327 59467405 -222726259 + (TG)n Simple_repeat Simple_repeat 2 80 0 1765 101 52 4 chr1 59467644 59467912 -222725752 - AluSg SINE Alu -29 281 1 243 333 34 17 chr1 59467930 59468047 -222725617 + MIR SINE MIR 66 184 -78 279 221 8 131 chr1 59469482 59469604 -222724060 + L2 LINE L2 2942 3048 -224 985 126 0 7 chr1 59469608 59469759 -222723905 - FRAM SINE Alu -7 169 20 439 248 248 0 chr1 59470638 59470783 -222722881 - MER5A DNA MER1_type 0 189 9 429 222 136 86 chr1 59471014 59471257 -222722407 - L1ME3A LINE L1 -220 5950 5696 2171 88 3 3 chr1 59471258 59471552 -222722112 - AluSp SINE Alu -19 294 1 1546 162 3 99 chr1 59471561 59471894 -222721770 - AluJo SINE Alu -1 301 1 949 162 20 35 chr1 59471908 59472106 -222721558 - L1MB7 LINE L1 0 6184 5990 445 267 5 36 chr1 59472108 59472329 -222721335 - L1M4 LINE L1 -2853 3293 3080 265 284 74 70 chr1 59472430 59472613 -222721051 - L1MEd LINE L1 -5856 263 77 1862 140 25 0 chr1 59472613 59472898 -222720766 + AluSc SINE Alu 1 292 -17 265 284 74 70 chr1 59472898 59472971 -222720693 - L1MEd LINE L1 -6042 77 6 214 333 40 0 chr1 59472977 59473052 -222720612 + L2 LINE L2 3186 3263 -9 192 363 0 25 chr1 59473734 59473814 -222719850 + L2 LINE L2 3194 3271 -1 556 206 16 0 chr1 59473881 59474007 -222719657 + L2 LINE L2 1283 1410 -1904 399 102 0 17 chr1 59474010 59474069 -222719595 + AluJb SINE Alu 85 142 -160 1962 131 0 0 chr1 59474069 59474352 -222719312 + AluSq SINE Alu 1 283 -30 331 196 0 0 chr1 59474363 59474419 -222719245 + L1MC4 LINE L1 6648 6703 -1339 308 330 0 22 chr1 59474391 59474482 -222719182 - L1MC4 LINE L1 -1339 6703 6615 * 227 296 99 0 chr1 59474488 59474569 -222719095 - L1MC4 LINE L1 -1340 6702 6614 990 175 0 6 chr1 59474573 59474750 -222718914 + AluJb SINE Alu 136 311 -1 1156 282 58 21 chr1 59474757 59475133 -222718531 + L2 LINE L2 1405 1794 -1520 2185 105 0 0 chr1 59475134 59475429 -222718235 + AluSx SINE Alu 1 295 -17 1615 146 0 126 chr1 59475440 59475782 -222717882 + AluJo SINE Alu 1 299 -3 800 167 11 61 chr1 59475800 59475980 -222717684 + FRAM SINE Alu 1 163 -13 1395 155 0 88 chr1 59475980 59476309 -222717355 + AluJb SINE Alu 12 314 0 278 305 188 0 chr1 59476570 59476698 -222716966 + MIR SINE MIR 54 205 -57 350 240 31 108 chr1 59476712 59476841 -222716823 - MER5A DNA MER1_type 0 189 71 271 308 8 68 chr1 59476746 59476844 -222716820 + MER5B DNA MER1_type 24 115 -63 * 1772 173 0 3 chr1 59476844 59477144 -222716520 - AluJb SINE Alu -13 299 1 271 308 8 68 chr1 59477144 59477162 -222716502 + MER5B DNA MER1_type 115 133 -45 1665 118 55 7 chr1 59477204 59477496 -222716168 - AluSx SINE Alu 0 305 1 735 184 158 13 chr1 59477590 59477742 -222715922 + FAM SINE Alu 1 174 -11 708 197 8 0 chr1 59477861 59477983 -222715681 - FLAM_C SINE Alu -10 133 11 2092 114 3 0 chr1 59478571 59478868 -222714796 + AluSx SINE Alu 1 298 -14 345 371 41 41 chr1 59479104 59479349 -222714315 + L2 LINE L2 2834 3078 -194 211 367 13 0 chr1 59479399 59479478 -222714186 + L2 LINE L2 3193 3272 0 982 214 107 44 chr1 59479622 59479940 -222713724 + L1MC5 LINE L1 7084 7421 -540 737 168 8 15 chr1 59479940 59480071 -222713593 + AluJo SINE Alu 6 135 -177 396 178 25 34 chr1 59480076 59480194 -222713470 + L1MC5 LINE L1 7410 7526 -435 327 179 18 0 chr1 59480272 59480328 -222713336 + AluS SINE Alu 1 57 -244 284 273 50 10 chr1 59480517 59480616 -222713048 - MIR SINE MIR -6 256 154 1747 57 0 0 chr1 59480616 59480827 -222712837 - AluY SINE Alu -100 211 1 320 257 53 64 chr1 59480835 59481022 -222712642 + L1ME4a LINE L1 5834 6018 -103 1563 163 0 4 chr1 59481100 59481364 -222712300 - AluJb SINE Alu -4 308 46 1478 257 59 12 chr1 59481368 59481777 -222711887 + LTR16C LTR ERVL 64 491 0 439 327 101 31 chr1 59482110 59482367 -222711297 + L3 LINE CR1 1265 1539 -38 384 299 174 7 chr1 59482455 59482599 -222711065 + MIR SINE MIR 25 192 -70 286 312 0 0 chr1 59483298 59483375 -222710289 + L2 LINE L2 3190 3266 -6 349 312 51 29 chr1 59483410 59483548 -222710116 + MIR3 SINE MIR 8 148 -60 246 336 29 29 chr1 59483602 59483706 -222709958 + MIR3 SINE MIR 53 156 -52 353 303 130 6 chr1 59483709 59483871 -222709793 - MIR SINE MIR -15 247 66 260 280 73 3 chr1 59483925 59484044 -222709620 - MIR SINE MIR -65 143 22 260 273 69 2 chr1 59484057 59484157 -222709507 - MIR SINE MIR -65 143 43 1334 204 101 171 chr1 59484275 59485055 -222708609 + LTR8 LTR ERV1 1 726 -1 337 290 93 19 chr1 59485058 59485156 -222708508 + L2 LINE L2 3139 3247 -25 240 86 0 0 chr1 59485156 59485191 -222708473 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 353 232 0 0 chr1 59485504 59485573 -222708091 - L3 LINE CR1 -108 1469 1401 190 268 0 0 chr1 59485690 59485731 -222707933 - MIR3 SINE MIR -52 156 116 207 344 167 0 chr1 59485747 59485837 -222707827 - L3 LINE CR1 -571 1006 902 256 300 0 0 chr1 59485857 59485927 -222707737 + L2 LINE L2 3201 3270 -2 21 36 0 0 chr1 59486677 59486705 -222706959 + GC_rich Low_complexity Low_complexity 1 28 0 188 268 14 28 chr1 59487860 59487931 -222705733 + MIR SINE MIR 28 97 -111 194 310 92 42 chr1 59488034 59488176 -222705488 - L2 LINE L2 -96 3176 3028 1478 199 125 42 chr1 59488597 59488654 -222705010 - Charlie4a DNA MER1_type -1477 484 433 2103 96 43 10 chr1 59488654 59488956 -222704708 - AluSx SINE Alu 0 312 1 1478 199 125 42 chr1 59488956 59489330 -222704334 - Charlie4a DNA MER1_type -1528 433 17 584 251 117 12 chr1 59489443 59489614 -222704050 - MIR SINE MIR -11 251 63 1419 141 178 19 chr1 59489827 59490096 -222703568 + AluJo SINE Alu 1 312 0 268 196 43 43 chr1 59490106 59490198 -222703466 - L1ME4a LINE L1 -22 6099 6008 362 179 26 26 chr1 59490244 59490322 -222703342 - MIR SINE MIR -118 144 67 261 196 39 0 chr1 59491145 59491196 -222702468 + MER66A LTR ERV1 284 336 -142 205 186 0 0 chr1 59491199 59491242 -222702422 + A-rich Low_complexity Low_complexity 1 43 0 455 287 55 17 chr1 59491379 59491616 -222702048 - L1ME4a LINE L1 -222 5948 5703 2251 76 3 0 chr1 59491654 59491942 -222701722 + AluSx SINE Alu 1 289 -23 1157 180 0 5 chr1 59491967 59492178 -222701486 + AluJb SINE Alu 84 293 -19 2147 244 26 24 chr1 59492183 59492766 -222700898 - L1ME1 LINE L1 -5 6161 5578 950 148 11 63 chr1 59492766 59492955 -222700709 + AluJo SINE Alu 87 265 -47 222 128 0 0 chr1 59492964 59493003 -222700661 + (GAAA)n Simple_repeat Simple_repeat 4 42 0 676 222 0 0 chr1 59493158 59493284 -222700380 + FLAM_A SINE Alu 1 126 -7 1354 185 34 24 chr1 59493344 59493641 -222700023 + AluSq SINE Alu 1 300 -13 929 104 7 22 chr1 59493756 59493891 -222699773 - FLAM_C SINE Alu 0 133 1 1618 118 114 46 chr1 59493973 59494253 -222699411 - AluSx SINE Alu -13 299 1 313 346 75 19 chr1 59494537 59494751 -222698913 - L2 LINE L2 -191 3081 2856 2173 117 3 0 chr1 59495211 59495519 -222698145 - AluSx SINE Alu -3 309 1 1446 193 31 3 chr1 59495732 59496022 -222697642 - AluJo SINE Alu -14 298 1 728 316 41 74 chr1 59496072 59496436 -222697228 - L2 LINE L2 -6 3266 2915 1675 168 0 41 chr1 59496436 59496752 -222696912 + AluJo SINE Alu 1 303 -9 182 186 0 23 chr1 59496855 59496898 -222696766 + L2 LINE L2 3231 3272 0 881 244 73 12 chr1 59496982 59497228 -222696436 + MIR SINE MIR 2 262 0 412 332 100 76 chr1 59497228 59497608 -222696056 - L2 LINE L2 0 3272 2884 458 312 102 5 chr1 59497608 59497813 -222695851 - MIR SINE MIR -18 244 20 1753 166 0 7 chr1 59497877 59498185 -222695479 - AluJo SINE Alu -6 306 1 27 0 0 0 chr1 59498186 59498213 -222695451 + AT_rich Low_complexity Low_complexity 1 27 0 298 267 44 11 chr1 59499172 59499262 -222694402 + MER119 DNA MER1_type 3 95 -488 1541 178 33 0 chr1 59499262 59499538 -222694126 + AluSx SINE Alu 1 285 -27 214 0 0 98 chr1 59499540 59499591 -222694073 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 979 213 20 0 chr1 59499636 59499838 -222693826 + MER119 DNA MER1_type 173 378 -205 299 185 37 0 chr1 59499827 59499881 -222693783 + AluSp SINE Alu 120 175 -128 * 3947 111 9 89 chr1 59499881 59500557 -222693107 - MER51A LTR ERV1 0 634 13 643 111 6 5 chr1 59500571 59500750 -222692914 + AluSx SINE Alu 35 298 -11 2092 98 30 0 chr1 59500751 59501047 -222692617 + AluSx SINE Alu 2 306 -6 879 140 10 90 chr1 59501055 59501255 -222692409 + MER119 DNA MER1_type 400 583 0 848 235 60 5 chr1 59501383 59501583 -222692081 - MIR SINE MIR -50 212 2 2075 103 0 10 chr1 59501776 59502094 -222691570 + AluSq SINE Alu 1 313 0 1272 97 6 0 chr1 59502652 59502828 -222690836 - AluSp SINE Alu -16 297 121 1491 180 7 7 chr1 59503031 59503325 -222690339 + AluJo SINE Alu 14 307 -5 22 56 0 0 chr1 59503344 59503380 -222690284 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr1 59503636 59503656 -222690008 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 1376 161 47 47 chr1 59503659 59503938 -222689726 - AluJo SINE Alu -33 279 1 1618 79 0 9 chr1 59504328 59504544 -222689120 - AluSq SINE Alu -18 295 82 1937 108 3 27 chr1 59504544 59504839 -222688825 - AluSc SINE Alu -20 289 1 1834 148 3 3 chr1 59505214 59505518 -222688146 + AluJb SINE Alu 1 304 -8 375 242 146 54 chr1 59505534 59505774 -222687890 + L2 LINE L2 3050 3311 -2 198 298 50 56 chr1 59505975 59506018 -222687646 + L2 LINE L2 2923 2965 -330 2205 104 0 7 chr1 59506018 59506326 -222687338 - AluSx SINE Alu -6 306 1 198 298 50 56 chr1 59506326 59506443 -222687221 + L2 LINE L2 2965 3083 -212 1016 170 6 0 chr1 59506453 59506618 -222687046 - FRAM SINE Alu 0 166 1 1402 207 3 11 chr1 59506688 59507004 -222686660 + AluJo SINE Alu 1 314 0 411 211 13 0 chr1 59507142 59507218 -222686446 + MER5A DNA MER1_type 1 77 -112 1890 145 3 0 chr1 59507220 59507503 -222686161 + AluJb SINE Alu 12 295 -17 1295 95 0 0 chr1 59507525 59507693 -222685971 - AluSg/x SINE Alu -78 232 65 1980 163 46 3 chr1 59507977 59508327 -222685337 + MLT1A1 LTR MaLR 1 365 0 1567 176 14 10 chr1 59508761 59509050 -222684614 + AluJo SINE Alu 3 292 -20 241 324 17 29 chr1 59510154 59510327 -222683337 + GA-rich Low_complexity Low_complexity 3 173 0 214 158 0 0 chr1 59510805 59510843 -222682821 + (CAG)n Simple_repeat Simple_repeat 3 40 0 1984 261 95 68 chr1 59511043 59511360 -222682304 + L2 LINE L2 528 835 -2479 2463 73 0 0 chr1 59511360 59511673 -222681991 - AluSq SINE Alu 0 313 1 1984 261 95 68 chr1 59511673 59512351 -222681313 + L2 LINE L2 835 1550 -1764 506 129 144 29 chr1 59512355 59512494 -222681170 - MER5C DNA MER1_type -6 318 164 1193 136 0 55 chr1 59512502 59512588 -222681076 - L1MB3 LINE L1 -45 6138 6049 1494 182 7 21 chr1 59512588 59512912 -222680752 - AluJo SINE Alu 0 320 1 1193 136 0 55 chr1 59512912 59513044 -222680620 - L1MB3 LINE L1 -134 6049 5931 603 241 76 0 chr1 59513047 59513192 -222680472 - MER5C DNA MER1_type -164 160 5 398 231 75 34 chr1 59513196 59513343 -222680321 + L2 LINE L2 1557 1709 -1605 634 73 0 0 chr1 59513353 59513435 -222680229 + AluSg/x SINE Alu 215 296 -14 1793 257 134 0 chr1 59513437 59513521 -222680143 + L2 LINE L2 1712 1783 -1531 1851 158 0 0 chr1 59513521 59513800 -222679864 - AluJb SINE Alu -33 279 1 1793 257 134 0 chr1 59513800 59514259 -222679405 + L2 LINE L2 1783 2328 -986 255 275 0 0 chr1 59514310 59514379 -222679285 - MLT1L LTR MaLR -419 196 128 2137 118 0 10 chr1 59514453 59514766 -222678898 + AluSg SINE Alu 1 310 0 1537 175 34 7 chr1 59514781 59515073 -222678591 + AluJb SINE Alu 1 300 -12 360 338 66 28 chr1 59515128 59515341 -222678323 + L1MC4a LINE L1 4799 5019 -1127 904 102 16 0 chr1 59515349 59515476 -222678188 + AluSq/x SINE Alu 4 132 -180 1725 122 83 0 chr1 59515479 59515757 -222677907 + AluSg SINE Alu 1 301 -9 2532 48 0 6 chr1 59515757 59516069 -222677595 + AluY SINE Alu 1 311 0 2779 16 0 0 chr1 59516079 59516396 -222677268 + AluYb8 SINE Alu 2 318 0 330 342 49 33 chr1 59516408 59516493 -222677171 + L1MC4a LINE L1 5024 5106 -1040 1985 110 33 0 chr1 59516493 59516793 -222676871 + AluSg SINE Alu 1 310 0 330 342 49 33 chr1 59516793 59516891 -222676773 + L1MC4a LINE L1 5106 5210 -936 1492 267 75 38 chr1 59516962 59517391 -222676273 + L1MC4a LINE L1 5293 5753 -2055 1209 211 36 36 chr1 59517391 59517699 -222675965 - AluJo SINE Alu -4 308 1 1492 267 75 38 chr1 59517699 59517883 -222675781 + L1MC4a LINE L1 5753 5929 -1879 1103 147 0 0 chr1 59518044 59518221 -222675443 - AluSg/x SINE Alu -2 310 134 2136 128 0 0 chr1 59518221 59518527 -222675137 - AluSx SINE Alu -6 306 1 980 169 6 0 chr1 59518663 59518823 -222674841 - AluJb SINE Alu -19 293 133 525 97 21 54 chr1 59518839 59518932 -222674732 + AluS SINE Alu 2 91 -222 1460 79 42 83 chr1 59519758 59519861 -222673803 + MER30 DNA MER1_type 1 107 -123 2009 97 21 0 chr1 59519861 59520189 -222673475 - AluSp SINE Alu 0 334 1 1460 79 42 83 chr1 59520189 59520324 -222673340 + MER30 DNA MER1_type 107 230 0 249 229 24 60 chr1 59520385 59520468 -222673196 + MIR SINE MIR 19 98 -110 1442 184 11 43 chr1 59520468 59520619 -222673045 - AluJb SINE Alu -39 273 134 1830 120 3 40 chr1 59520619 59520920 -222672744 - AluSq SINE Alu -23 290 1 1442 184 11 43 chr1 59520920 59521050 -222672614 - AluJb SINE Alu -178 134 1 1071 201 11 0 chr1 59521050 59521229 -222672435 - MER20 DNA MER1_type -38 181 1 1947 145 3 3 chr1 59521233 59521544 -222672120 + AluSx SINE Alu 1 311 -1 297 308 0 0 chr1 59521822 59521900 -222671764 - MIR SINE MIR -60 148 71 707 187 0 8 chr1 59522021 59522144 -222671520 + FLAM_A SINE Alu 1 122 -11 614 88 0 0 chr1 59522258 59522349 -222671315 - MER53 DNA DNA 0 189 99 266 279 15 0 chr1 59522615 59522683 -222670981 - L2 LINE L2 -2 3311 3243 1724 140 0 11 chr1 59522938 59523216 -222670448 - AluJb SINE Alu -5 307 33 1017 94 14 0 chr1 59523216 59523354 -222670310 - AluSg SINE Alu -170 140 1 294 200 0 17 chr1 59523355 59523415 -222670249 - MLT1J LTR MaLR -398 113 55 1876 116 0 21 chr1 59523523 59523807 -222669857 + AluSx SINE Alu 28 305 -7 582 242 12 50 chr1 59523900 59523999 -222669665 + MLT1J LTR MaLR 16 108 -403 2105 90 31 0 chr1 59523999 59524287 -222669377 + AluSg SINE Alu 1 297 -13 582 242 12 50 chr1 59524287 59524348 -222669316 + MLT1J LTR MaLR 108 170 -341 418 266 160 11 chr1 59524384 59524572 -222669092 + MLT1J LTR MaLR 289 504 -7 1904 140 3 19 chr1 59524692 59524828 -222668836 + AluSx SINE Alu 1 138 -174 2018 113 3 3 chr1 59524828 59525129 -222668535 + AluSq SINE Alu 1 301 -12 1904 140 3 19 chr1 59525129 59525300 -222668364 + AluSx SINE Alu 138 303 -9 2010 128 7 0 chr1 59525509 59525806 -222667858 - AluSx SINE Alu -13 299 1 566 303 102 89 chr1 59525967 59526429 -222667235 + L2 LINE L2 2804 3271 -1 2020 144 7 0 chr1 59526716 59527022 -222666642 + AluJb SINE Alu 1 308 -4 609 313 124 28 chr1 59527617 59528083 -222665581 - L2 LINE L2 -925 2389 1879 428 83 83 0 chr1 59528188 59528284 -222665380 + T-rich Low_complexity Low_complexity 5 108 0 1843 138 13 3 chr1 59528291 59528596 -222665068 - AluSq SINE Alu -5 308 1 3500 214 68 11 chr1 59528619 59529372 -222664292 - L1MDa LINE L1 -5624 916 121 2067 128 3 0 chr1 59529581 59529887 -222663777 - AluSx SINE Alu -5 307 1 270 343 43 53 chr1 59529993 59530200 -222663464 + L2 LINE L2 3104 3308 -5 1111 195 50 11 chr1 59530281 59530558 -222663106 - MER33 DNA MER1_type -36 288 1 1101 207 5 0 chr1 59531083 59531296 -222662368 - AluJo SINE Alu -11 301 88 497 272 173 77 chr1 59531422 59531786 -222661878 - MLT1I LTR MaLR -10 399 1 449 255 83 21 chr1 59531787 59531932 -222661732 + MIR SINE MIR 59 212 -50 191 293 155 17 chr1 59532918 59533034 -222660630 + MIR SINE MIR 79 210 -52 198 0 0 0 chr1 59533119 59533141 -222660523 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2411 70 0 0 chr1 59533668 59533969 -222659695 - AluY SINE Alu -10 301 1 1900 93 4 4 chr1 59534168 59534415 -222659249 - AluSg SINE Alu -63 247 1 801 92 143 0 chr1 59534415 59534534 -222659130 - AluSq/x SINE Alu -176 136 1 2138 124 10 3 chr1 59534755 59535062 -222658602 + AluSx SINE Alu 1 309 -3 262 224 149 28 chr1 59535073 59535113 -222658551 + MIR3 SINE MIR 63 97 -111 1252 146 221 4 chr1 59535113 59535367 -222658297 - AluJb SINE Alu -3 309 1 262 224 149 28 chr1 59535367 59535433 -222658231 + MIR3 SINE MIR 97 182 -26 485 148 9 8 chr1 59535866 59536097 -222657567 + AluJo SINE Alu 1 305 -7 818 162 0 0 chr1 59537765 59537882 -222655782 + FLAM_C SINE Alu 1 117 -16 189 0 0 0 chr1 59537891 59537912 -222655752 + (T)n Simple_repeat Simple_repeat 1 21 0 2396 82 0 0 chr1 59538914 59539207 -222654457 - AluSg SINE Alu -17 293 1 785 175 51 7 chr1 59539270 59539407 -222654257 + FRAM SINE Alu 20 162 -14 2042 119 0 20 chr1 59539420 59539713 -222653951 - AluSx SINE Alu -21 291 5 953 140 0 79 chr1 59540228 59540392 -222653272 - AluJo SINE Alu -159 153 3 1877 147 39 0 chr1 59542462 59542747 -222650917 - AluSx SINE Alu -16 296 1 22 35 0 0 chr1 59542796 59542825 -222650839 + AT_rich Low_complexity Low_complexity 1 29 0 482 90 20 150 chr1 59542828 59542928 -222650736 - AluJ/FRAM SINE Alu -9 303 217 1838 143 0 4 chr1 59542932 59543198 -222650466 - AluSq SINE Alu -48 265 1 2201 75 11 4 chr1 59543349 59543657 -222650007 + AluY SINE Alu 1 310 0 2165 108 3 3 chr1 59543762 59544057 -222649607 - AluSg SINE Alu -15 295 1 2032 113 53 0 chr1 59544486 59544768 -222648896 + AluSg SINE Alu 1 297 -13 1758 180 7 10 chr1 59545072 59545372 -222648292 - AluJb SINE Alu -13 299 1 2204 121 0 0 chr1 59545425 59545722 -222647942 + AluSx SINE Alu 1 297 -15 510 17 0 0 chr1 59545722 59545781 -222647883 + (TA)n Simple_repeat Simple_repeat 1 59 0 1573 194 21 0 chr1 59545861 59546149 -222647515 + AluJb SINE Alu 1 294 -18 2472 65 0 40 chr1 59546445 59546767 -222646897 + AluSq SINE Alu 1 309 -4 2408 48 0 10 chr1 59547581 59547892 -222645772 - AluY SINE Alu 0 311 1 210 91 0 0 chr1 59547892 59547925 -222645739 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1564 173 56 4 chr1 59547925 59548191 -222645473 - AluJb SINE Alu -30 282 3 804 179 0 8 chr1 59548192 59548326 -222645338 - AluJo/FLAM SINE Alu -179 133 1 1903 134 18 3 chr1 59548386 59548670 -222644994 - AluSx SINE Alu -24 288 1 252 0 0 0 chr1 59548813 59548841 -222644823 + (TG)n Simple_repeat Simple_repeat 2 29 0 724 175 175 0 chr1 59548851 59548971 -222644693 - FRAM SINE Alu -35 141 1 324 301 97 17 chr1 59548983 59549159 -222644505 + L2 LINE L2 3123 3312 -1 2183 108 3 0 chr1 59549225 59549522 -222644142 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr1 59550014 59550042 -222643622 + AT_rich Low_complexity Low_complexity 1 28 0 1618 244 45 106 chr1 59550210 59550585 -222643079 + L1MEc LINE L1 298 694 -5702 1495 143 0 0 chr1 59550585 59550834 -222642830 + AluSg/x SINE Alu 67 315 0 2209 106 0 7 chr1 59550841 59551134 -222642530 + AluSx SINE Alu 1 291 -21 198 0 0 0 chr1 59551142 59551164 -222642500 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1618 244 45 106 chr1 59551164 59551505 -222642159 + L1MEc LINE L1 707 1067 -5329 2314 72 7 3 chr1 59551505 59551797 -222641867 - AluY SINE Alu -18 293 1 1618 244 45 106 chr1 59551797 59551943 -222641721 + L1MEc LINE L1 1067 1099 -5297 740 174 26 0 chr1 59551943 59552058 -222641606 + FLAM_C SINE Alu 1 118 -15 1618 244 45 106 chr1 59552058 59552300 -222641364 + L1MEc LINE L1 1099 1354 -5042 353 245 14 48 chr1 59552301 59552448 -222641216 + L1MEc LINE L1 1578 1719 -4677 2101 131 7 0 chr1 59552487 59552792 -222640872 - AluSx SINE Alu -5 307 1 2345 233 71 38 chr1 59552825 59553588 -222640076 + L1MEc LINE L1 37 824 -5572 2297 170 12 3 chr1 59553586 59554058 -222639606 + L1MB3 LINE L1 5210 5688 -495 * 479 65 16 0 chr1 59554059 59554121 -222639543 + Alu SINE Alu 2 64 -247 1433 172 34 4 chr1 59554121 59554388 -222639276 + L1MB3 LINE L1 5907 6181 -2 1139 233 93 35 chr1 59554410 59554876 -222638788 + L1MEc LINE L1 812 1152 -4961 789 187 0 0 chr1 59554880 59555003 -222638661 + FLAM_C SINE Alu 2 124 -19 1005 282 41 36 chr1 59555003 59555164 -222638500 + L1M3c LINE L1 1296 1455 -4810 2367 83 0 3 chr1 59555164 59555464 -222638200 - AluSq SINE Alu -14 299 1 1005 282 41 36 chr1 59555464 59555759 -222637905 + L1M3c LINE L1 1455 1749 -4516 1990 149 3 0 chr1 59555764 59556053 -222637611 + AluJb SINE Alu 11 300 -12 749 128 8 0 chr1 59556127 59556244 -222637420 + L1MA7 LINE L1 6128 6245 -46 897 105 8 0 chr1 59556244 59556368 -222637296 + AluSq/x SINE Alu 1 125 -187 2245 91 0 14 chr1 59556374 59556670 -222636994 + AluSg SINE Alu 1 292 -18 28 0 0 0 chr1 59556692 59556720 -222636944 + AT_rich Low_complexity Low_complexity 1 28 0 1749 272 19 29 chr1 59556720 59557447 -222636217 + L1M3c LINE L1 2203 2886 -3329 2159 126 10 3 chr1 59557686 59557995 -222635669 - AluSx SINE Alu -1 311 1 318 183 60 10 chr1 59558090 59558189 -222635475 - L1ME LINE L1 -343 5778 5677 693 130 19 28 chr1 59558332 59558430 -222635234 + U6 snRNA snRNA 1 99 -8 2465 85 3 0 chr1 59558430 59558735 -222634929 - AluSp SINE Alu -7 306 1 23 0 0 0 chr1 59558747 59558770 -222634894 + AT_rich Low_complexity Low_complexity 1 23 0 2096 139 7 0 chr1 59558912 59559215 -222634449 - AluSx SINE Alu -7 305 1 1768 167 0 27 chr1 59559288 59559588 -222634076 - AluJo SINE Alu -20 292 1 1757 170 0 26 chr1 59559641 59559952 -222633712 + AluJb SINE Alu 1 303 -9 183 184 0 0 chr1 59560041 59560079 -222633585 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 1125 99 0 0 chr1 59560089 59560231 -222633433 - AluSp/q SINE Alu -13 300 159 1077 140 0 0 chr1 59560245 59560423 -222633241 + (TA)n Simple_repeat Simple_repeat 1 178 0 27 0 0 0 chr1 59560428 59560455 -222633209 + AT_rich Low_complexity Low_complexity 1 27 0 2334 73 3 0 chr1 59560464 59560752 -222632912 - AluY SINE Alu -22 289 1 906 129 19 13 chr1 59560783 59560938 -222632726 + BC200 scRNA scRNA 2 157 -43 606 156 46 37 chr1 59560994 59561103 -222632561 + FLAM_C SINE Alu 2 111 -32 2135 96 3 54 chr1 59561122 59561435 -222632229 - AluSp SINE Alu -16 297 1 326 237 75 11 chr1 59561492 59561585 -222632079 + MIR SINE MIR 64 162 -100 1897 124 3 49 chr1 59561589 59561747 -222631917 - AluSx SINE Alu -20 292 153 2078 129 14 0 chr1 59561747 59562042 -222631622 - AluSq SINE Alu -14 299 1 1897 124 3 49 chr1 59562042 59562189 -222631475 - AluSx SINE Alu -159 153 1 1993 123 14 3 chr1 59562355 59562639 -222631025 - AluSx SINE Alu -19 293 7 2210 107 3 22 chr1 59563094 59563412 -222630252 - AluSx SINE Alu 0 312 1 2059 106 10 29 chr1 59563416 59563727 -222629937 - AluSx SINE Alu -7 305 1 1304 130 10 0 chr1 59563727 59563927 -222629737 + MER57B LTR ERV1 233 434 0 4000 131 54 20 chr1 59563927 59564577 -222629087 + MER57B-int LTR ERV1 1 672 -6865 3507 141 37 9 chr1 59564574 59564903 -222628761 + MER41-int LTR ERV1 288 607 -5339 * 2155 117 0 16 chr1 59564903 59565211 -222628453 - AluSx SINE Alu -9 303 1 3507 141 37 9 chr1 59565211 59565537 -222628127 + MER41-int LTR ERV1 607 1056 -4890 2282 68 0 48 chr1 59565537 59565846 -222627818 - AluY SINE Alu -17 294 1 3507 141 37 9 chr1 59565846 59565930 -222627734 + MER41-int LTR ERV1 1056 1136 -4810 1901 167 111 3 chr1 59565920 59566279 -222627385 + MER41-int LTR ERV1 1371 1768 -4178 * 966 123 12 8 chr1 59566294 59566456 -222627208 + MER41-int LTR ERV1 1514 2017 -3929 364 71 54 0 chr1 59566428 59566484 -222627180 + MER41-int LTR ERV1 2163 2221 -3725 * 1153 184 32 64 chr1 59566513 59566669 -222626995 + MER41-int LTR ERV1 4005 4150 -2113 2464 82 0 0 chr1 59566669 59566975 -222626689 + AluSq SINE Alu 1 306 -7 1153 184 32 64 chr1 59566975 59567100 -222626564 + MER41-int LTR ERV1 4150 4277 -1986 * 8667 98 40 41 chr1 59567091 59567697 -222625967 + MER41-int LTR ERV1 5307 5912 -1625 2182 86 4 0 chr1 59567697 59567966 -222625698 - AluSq SINE Alu -21 292 23 8667 98 40 41 chr1 59567966 59567979 -222625685 + MER41-int LTR ERV1 5912 5924 -1613 2308 102 3 3 chr1 59567979 59568283 -222625381 - AluSp SINE Alu -9 304 1 8667 98 40 41 chr1 59568283 59568977 -222624687 + MER41-int LTR ERV1 5924 6619 -918 2166 116 3 3 chr1 59568977 59569287 -222624377 + AluSg SINE Alu 1 310 0 1194 117 0 0 chr1 59569287 59569449 -222624215 + AluSg/x SINE Alu 134 295 -17 887 151 30 6 chr1 59569541 59569707 -222623957 - AluSg/x SINE Alu -20 292 123 26 0 0 0 chr1 59569709 59569735 -222623929 + AT_rich Low_complexity Low_complexity 1 26 0 243 88 0 0 chr1 59569858 59569892 -222623772 + (TA)n Simple_repeat Simple_repeat 2 35 0 1065 145 0 0 chr1 59569905 59570084 -222623580 + (TA)n Simple_repeat Simple_repeat 1 179 0 27 0 0 0 chr1 59570108 59570135 -222623529 + AT_rich Low_complexity Low_complexity 1 27 0 1835 87 0 0 chr1 59570144 59570374 -222623290 - AluY SINE Alu -22 289 60 255 125 0 0 chr1 59570448 59570488 -222623176 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2134 130 0 10 chr1 59570531 59570832 -222622832 + AluJb SINE Alu 11 308 -4 632 181 69 0 chr1 59570843 59570959 -222622705 - U4 snRNA snRNA -21 124 1 264 336 41 16 chr1 59571741 59571863 -222621801 - MIR SINE MIR -104 158 34 214 328 30 0 chr1 59571994 59572061 -222621603 + polypyrimidine Low_complexity Low_complexity 1 69 0 2142 113 3 13 chr1 59572350 59572650 -222621014 - AluSx SINE Alu -15 297 1 1743 192 0 0 chr1 59572882 59573169 -222620495 - AluJo SINE Alu -11 301 15 277 261 261 14 chr1 59573177 59573315 -222620349 - MIR SINE MIR -71 191 20 1829 133 37 20 chr1 59573357 59573657 -222620007 - AluSg SINE Alu -5 305 1 2304 108 0 0 chr1 59573658 59573965 -222619699 - AluY SINE Alu -4 307 1 1752 182 14 0 chr1 59574547 59574838 -222618826 - AluJb SINE Alu -17 295 1 256 280 108 11 chr1 59574863 59574956 -222618708 - MIR SINE MIR -87 121 20 1648 176 13 17 chr1 59575030 59575331 -222618333 - AluJb SINE Alu -12 300 1 26 0 0 0 chr1 59575333 59575359 -222618305 + AT_rich Low_complexity Low_complexity 1 26 0 2406 55 0 7 chr1 59575362 59575653 -222618011 + AluY SINE Alu 1 289 -22 646 71 71 12 chr1 59575653 59576151 -222617513 + (TA)n Simple_repeat Simple_repeat 1 527 0 625 81 58 12 chr1 59576164 59576336 -222617328 + (TA)n Simple_repeat Simple_repeat 1 180 0 400 161 0 0 chr1 59576611 59576667 -222616997 - AluS SINE Alu -254 57 2 1626 259 83 15 chr1 59577276 59577764 -222615900 - L2 LINE L2 0 3313 2739 2404 107 112 5 chr1 59577764 59578149 -222615515 - MSTA LTR MaLR -2 426 1 1626 259 83 15 chr1 59578149 59578460 -222615204 - L2 LINE L2 -574 2739 2450 397 364 65 46 chr1 59578488 59578749 -222614915 + L2 LINE L2 3001 3266 -6 2380 86 0 3 chr1 59578932 59579236 -222614428 + AluSc SINE Alu 1 303 -6 500 127 16 48 chr1 59579249 59579375 -222614289 + GA-rich Low_complexity Low_complexity 3 124 0 195 321 54 0 chr1 59579536 59579592 -222614072 + MIR SINE MIR 12 70 -192 234 265 59 44 chr1 59579647 59579715 -222613949 + MIR SINE MIR 13 81 -181 1118 107 107 6 chr1 59579715 59579892 -222613772 - AluSq SINE Alu -19 294 100 1911 154 3 3 chr1 59580016 59580301 -222613363 - AluSx SINE Alu -27 285 1 213 39 0 0 chr1 59580301 59580327 -222613337 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1329 78 6 17 chr1 59581260 59581440 -222612224 + AluSg/x SINE Alu 121 298 -12 344 238 76 9 chr1 59581563 59581668 -222611996 - MIR SINE MIR -70 192 81 243 139 0 0 chr1 59582483 59582519 -222611145 + U2 snRNA snRNA 4 39 -149 396 214 22 0 chr1 59583392 59583481 -222610183 - MIR SINE MIR -85 177 87 2398 125 36 13 chr1 59583951 59584335 -222609329 - Tigger3b DNA MER2_type -1 1230 838 1961 135 0 75 chr1 59584346 59584694 -222608970 - MER1B DNA MER1_type -17 322 1 * 4248 114 71 78 chr1 59584694 59585161 -222608503 - Tigger3b DNA MER2_type -2181 847 378 22 0 0 0 chr1 59585161 59585183 -222608481 + AT_rich Low_complexity Low_complexity 1 22 0 4248 114 71 78 chr1 59585183 59585224 -222608440 - Tigger3b DNA MER2_type -2650 378 338 1467 124 0 162 chr1 59585224 59585570 -222608094 + AluJb SINE Alu 13 302 -10 4248 114 71 78 chr1 59585570 59585892 -222607772 - Tigger3b DNA MER2_type -2690 338 1 257 308 11 22 chr1 59586200 59586291 -222607373 + MIR3 SINE MIR 92 181 -27 2141 96 13 0 chr1 59586294 59586595 -222607069 - AluSx SINE Alu -7 305 1 501 283 96 4 chr1 59586973 59587161 -222606503 - MIR SINE MIR -37 225 24 1784 208 56 103 chr1 59587288 59587859 -222605805 - MLT1E LTR MaLR 0 593 29 338 225 0 0 chr1 59588872 59588943 -222604721 - L2 LINE L2 -994 2320 2250 306 310 0 0 chr1 59589164 59589251 -222604413 + (CATG)n Simple_repeat Simple_repeat 2 88 0 592 282 57 83 chr1 59589251 59589552 -222604112 + L2 LINE L2 2979 3271 -1 1220 214 22 26 chr1 59589678 59589949 -222603715 + L1MC1 LINE L1 6064 6333 0 390 304 82 33 chr1 59589968 59590211 -222603453 - L2 LINE L2 -1293 2021 1767 339 279 147 7 chr1 59590252 59590388 -222603276 + L1MC5 LINE L1 7291 7445 -516 1895 79 101 0 chr1 59590551 59590818 -222602846 + AluSp SINE Alu 1 294 -19 334 239 11 19 chr1 59590878 59591001 -222602663 + L1ME2 LINE L1 5988 6110 -52 1786 169 0 3 chr1 59591033 59591335 -222602329 + AluJb SINE Alu 5 305 -7 206 227 0 0 chr1 59591399 59591443 -222602221 + (TG)n Simple_repeat Simple_repeat 2 45 0 250 293 43 17 chr1 59591565 59591681 -222601983 - MIR SINE MIR -60 148 30 345 298 3 18 chr1 59592065 59592218 -222601446 - MIR SINE MIR -65 143 6 1698 106 4 4 chr1 59592263 59592499 -222601165 + AluSq SINE Alu 4 239 -74 364 246 25 34 chr1 59592511 59592629 -222601035 + MIR3 SINE MIR 91 207 -1 2111 98 0 3 chr1 59592868 59593154 -222600510 + AluSx SINE Alu 1 285 -27 2384 151 32 46 chr1 59593190 59593692 -222599972 - L1MB4 LINE L1 -6 6174 5680 621 215 156 5 chr1 59593692 59593878 -222599786 - MER2 DNA MER2_type -2 343 130 1561 89 31 27 chr1 59593888 59594112 -222599552 - MER30 DNA MER1_type -5 225 1 789 151 14 36 chr1 59594112 59594249 -222599415 - MER2 DNA MER2_type -206 139 6 2094 144 72 29 chr1 59594250 59594579 -222599085 - L1MB4 LINE L1 -496 5684 5371 1995 107 32 19 chr1 59594579 59594887 -222598777 - AluSx SINE Alu 0 312 1 2094 144 72 29 chr1 59594887 59595011 -222598653 - L1MB4 LINE L1 -809 5371 5254 1883 133 33 3 chr1 59595011 59595311 -222598353 - AluSx SINE Alu -3 309 1 2094 144 72 29 chr1 59595311 59595394 -222598270 - L1MB4 LINE L1 -926 5254 5134 191 250 36 27 chr1 59595405 59595517 -222598147 + L2 LINE L2 1982 2094 -1220 591 309 140 23 chr1 59595926 59596218 -222597446 + L2 LINE L2 2912 3241 -31 704 122 0 0 chr1 59596347 59596454 -222597210 + AluSp/q SINE Alu 207 313 0 2193 75 0 56 chr1 59596458 59596777 -222596887 + AluSg SINE Alu 1 301 -9 464 228 158 27 chr1 59599127 59599311 -222594353 + MER3 DNA MER1_type 2 209 0 2305 88 7 0 chr1 59599423 59599729 -222593935 + AluSg SINE Alu 1 308 -2 938 188 0 19 chr1 59599760 59599920 -222593744 - FRAM SINE Alu -9 157 1 752 218 67 6 chr1 59599932 59600097 -222593567 + FRAM SINE Alu 1 172 -4 778 85 186 0 chr1 59600148 59600277 -222593387 + L1PB1 LINE L1 5999 6151 0 289 254 167 24 chr1 59600591 59600717 -222592947 - MIR SINE MIR -48 214 71 789 150 0 16 chr1 59600955 59601082 -222592582 + AluJo/FLAM SINE Alu 7 131 -181 1783 161 7 0 chr1 59601082 59601374 -222592290 + AluSx SINE Alu 1 294 -18 939 172 6 0 chr1 59602114 59602271 -222591393 - FRAM SINE Alu -10 166 9 1659 160 11 3 chr1 59602344 59602661 -222591003 - AluJb SINE Alu 0 319 1 433 270 10 0 chr1 59602765 59602865 -222590799 - MER81 DNA DNA -1 113 13 351 297 80 29 chr1 59603199 59603374 -222590290 - L1MC/D LINE L1 -2212 5596 5413 203 333 76 0 chr1 59603859 59603964 -222589700 + MIR SINE MIR 30 142 -66 337 248 110 11 chr1 59604572 59604685 -222588979 - MIR SINE MIR -73 135 23 479 206 79 8 chr1 59604984 59605020 -222588644 - MER3 DNA MER1_type -25 184 152 2266 57 4 0 chr1 59605020 59605324 -222588340 + AluY SINE Alu 1 305 0 479 206 79 8 chr1 59605324 59605412 -222588252 - MER3 DNA MER1_type -57 152 50 556 274 124 7 chr1 59605520 59605708 -222587956 + MIR SINE MIR 6 212 -50 459 226 78 10 chr1 59607461 59607563 -222586101 + MIR SINE MIR 32 140 -122 1801 148 0 26 chr1 59607704 59608009 -222585655 - AluJb SINE Alu -15 297 1 318 254 49 25 chr1 59608458 59608599 -222585065 + MIR SINE MIR 41 180 -62 1910 92 78 3 chr1 59609428 59609712 -222583952 + AluSg SINE Alu 1 305 -5 204 40 0 0 chr1 59609882 59609907 -222583757 + (A)n Simple_repeat Simple_repeat 1 25 0 2372 57 0 7 chr1 59609950 59610248 -222583416 + AluY SINE Alu 1 296 -15 758 170 0 0 chr1 59610380 59610492 -222583172 + FLAM_C SINE Alu 2 113 -30 33 43 0 0 chr1 59610511 59610558 -222583106 + AT_rich Low_complexity Low_complexity 1 47 0 790 220 60 0 chr1 59610664 59610814 -222582850 + AluJb SINE Alu 138 296 -16 28 0 0 0 chr1 59610820 59610848 -222582816 + AT_rich Low_complexity Low_complexity 1 28 0 446 168 88 18 chr1 59610848 59610961 -222582703 + MIR SINE MIR 136 256 -6 698 216 12 24 chr1 59611113 59611280 -222582384 - FRAM SINE Alu -6 170 6 2189 110 0 0 chr1 59611304 59611604 -222582060 + AluSq SINE Alu 1 300 -13 883 152 90 47 chr1 59612119 59612330 -222581334 - AluJo SINE Alu -61 251 32 364 295 5 68 chr1 59612505 59612712 -222580952 + L1ME4a LINE L1 5864 6057 -64 27 62 0 0 chr1 59613064 59613112 -222580552 + AT_rich Low_complexity Low_complexity 1 48 0 1469 135 12 95 chr1 59613115 59613440 -222580224 + AluJb SINE Alu 1 298 -14 195 229 146 35 chr1 59613527 59613644 -222580020 - MIR SINE MIR -43 219 87 2524 58 0 0 chr1 59613733 59614042 -222579622 + AluY SINE Alu 1 309 -2 1133 61 0 20 chr1 59614459 59614606 -222579058 + AluY SINE Alu 1 144 -167 214 91 0 68 chr1 59614608 59614652 -222579012 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 297 299 52 19 chr1 59614653 59614764 -222578900 + HAL1 LINE L1 232 351 -2156 2088 97 6 31 chr1 59614764 59615083 -222578581 + AluSx SINE Alu 1 311 -1 297 299 52 19 chr1 59615083 59615125 -222578539 + HAL1 LINE L1 351 390 -2117 419 314 13 63 chr1 59615145 59615304 -222578360 + HAL1 LINE L1 481 631 -1876 1118 119 0 6 chr1 59615305 59615465 -222578199 - AluSq SINE Alu -18 295 137 2290 68 7 0 chr1 59615465 59615758 -222577906 - AluY SINE Alu -16 295 1 26 0 0 0 chr1 59615767 59615793 -222577871 + AT_rich Low_complexity Low_complexity 1 26 0 1723 122 22 22 chr1 59615793 59616071 -222577593 + AluSx SINE Alu 1 278 -34 409 228 85 110 chr1 59616090 59616246 -222577418 + HAL1 LINE L1 793 951 -1556 1775 149 24 0 chr1 59616246 59616534 -222577130 + AluSx SINE Alu 1 295 -17 409 228 85 110 chr1 59616534 59616549 -222577115 + HAL1 LINE L1 951 965 -1542 1727 137 10 34 chr1 59616549 59616866 -222576798 + AluSx SINE Alu 1 310 0 409 228 85 110 chr1 59616866 59616964 -222576700 + HAL1 LINE L1 965 1057 -1450 312 218 207 0 chr1 59617016 59617103 -222576561 + HAL1 LINE L1 1283 1387 -1120 1344 206 138 15 chr1 59617125 59617523 -222576141 + HAL1 LINE L1 1363 1809 -698 242 241 56 19 chr1 59617671 59617779 -222575885 + HAL1 LINE L1 2236 2347 -160 1711 161 27 3 chr1 59617780 59618072 -222575592 + AluJb SINE Alu 1 299 -13 185 269 0 115 chr1 59618689 59618793 -222574871 - MIR SINE MIR -9 253 162 2280 234 57 40 chr1 59618966 59619542 -222574122 - MLT1E LTR MaLR -3 590 5 189 0 0 0 chr1 59619881 59619902 -222573762 + (A)n Simple_repeat Simple_repeat 1 21 0 1961 101 0 18 chr1 59619905 59620181 -222573483 + AluSc SINE Alu 1 271 -38 342 0 0 0 chr1 59620183 59620221 -222573443 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 269 228 0 0 chr1 59620925 59620982 -222572682 + MIR SINE MIR 3 59 -203 2201 98 3 35 chr1 59620994 59621312 -222572352 - AluSq SINE Alu -5 308 1 783 209 122 32 chr1 59621569 59621847 -222571817 + MLT1F LTR MaLR 240 542 0 492 234 0 9 chr1 59621848 59621955 -222571709 + MIR SINE MIR 151 256 -6 326 197 258 62 chr1 59622375 59622553 -222571111 + MIR SINE MIR 47 259 -3 208 179 45 119 chr1 59623437 59623504 -222570160 - MIR SINE MIR -93 169 108 510 302 167 14 chr1 59623620 59623968 -222569696 + L2 LINE L2 1105 1505 -1809 250 310 23 39 chr1 59624118 59624247 -222569417 + L2 LINE L2 1426 1552 -1762 1087 266 219 20 chr1 59624290 59624926 -222568738 + L2 LINE L2 1336 2097 -1217 5145 122 86 99 chr1 59624943 59625095 -222568569 - Tigger1 DNA MER2_type 0 2418 2266 2072 104 7 0 chr1 59625095 59625384 -222568280 - AluSx SINE Alu -21 291 1 5145 122 86 99 chr1 59625384 59625417 -222568247 - Tigger1 DNA MER2_type -152 2266 2234 1490 179 3 30 chr1 59625417 59625713 -222567951 + AluJo SINE Alu 1 288 -24 5145 122 86 99 chr1 59625713 59625954 -222567710 - Tigger1 DNA MER2_type -184 2234 1991 2305 90 6 0 chr1 59625954 59626265 -222567399 - AluSq SINE Alu 0 313 1 5145 122 86 99 chr1 59626265 59626641 -222567023 - Tigger1 DNA MER2_type -427 1991 1612 1622 174 28 3 chr1 59626641 59626923 -222566741 - AluJb SINE Alu -15 297 9 5145 122 86 99 chr1 59626923 59627056 -222566608 - Tigger1 DNA MER2_type -806 1612 1479 2036 143 0 6 chr1 59627056 59627370 -222566294 - AluSx SINE Alu 0 312 1 5145 122 86 99 chr1 59627370 59627566 -222566098 - Tigger1 DNA MER2_type -939 1479 1298 1712 123 86 7 chr1 59627566 59627835 -222565829 + AluSx SINE Alu 2 291 -21 191 197 273 15 chr1 59627836 59627902 -222565762 + L2 LINE L2 2286 2368 -946 360 313 103 23 chr1 59628023 59628237 -222565427 + L1 LINE L1 4466 4696 -1450 1214 114 91 5 chr1 59628265 59628475 -222565189 + AluSg/x SINE Alu 76 303 -9 330 261 87 11 chr1 59628486 59628578 -222565086 + L1 LINE L1 4786 4884 -1262 415 258 42 0 chr1 59628717 59628837 -222564827 + FAM SINE Alu 1 43 -6 451 310 83 46 chr1 59628844 59629060 -222564604 + L1 LINE L1 5057 5264 -882 9462 28 0 199 chr1 59629060 59630782 -222562882 + SVA Other Other 5 1384 -2 451 310 83 46 chr1 59630782 59630901 -222562763 + L1 LINE L1 5264 5371 -775 1621 135 71 24 chr1 59630901 59631197 -222562467 + AluSg SINE Alu 1 310 0 451 310 83 46 chr1 59631197 59631218 -222562446 + L1 LINE L1 5371 5390 -756 1938 129 3 26 chr1 59631218 59631528 -222562136 - AluSc SINE Alu -6 303 1 702 239 79 46 chr1 59631547 59631764 -222561900 + HAL1 LINE L1 2115 2344 -163 2396 71 3 0 chr1 59631764 59632073 -222561591 + AluSg SINE Alu 1 310 0 702 239 79 46 chr1 59632073 59632135 -222561529 + HAL1 LINE L1 2344 2403 -104 26 50 0 0 chr1 59633034 59633074 -222560590 + AT_rich Low_complexity Low_complexity 1 40 0 264 271 322 30 chr1 59633090 59633289 -222560375 - MIR SINE MIR -3 259 3 2535 46 0 0 chr1 59633791 59634094 -222559570 + AluY SINE Alu 1 303 -8 1591 260 63 20 chr1 59634097 59634763 -222558901 - L1ME1 LINE L1 -40 6126 5191 1756 113 82 0 chr1 59634787 59635069 -222558595 + AluSx SINE Alu 1 305 -7 1961 113 10 30 chr1 59635077 59635377 -222558287 + AluY SINE Alu 1 294 -17 1914 91 0 0 chr1 59635541 59635782 -222557882 + AluSg SINE Alu 58 298 -12 397 247 0 0 chr1 59636209 59636298 -222557366 + MIR SINE MIR 54 142 -66 1311 153 0 31 chr1 59637027 59637256 -222556408 + AluJo SINE Alu 86 307 -5 1435 159 0 122 chr1 59637310 59637417 -222556247 - AluJo SINE Alu -9 303 185 2415 65 0 10 chr1 59637417 59637726 -222555938 + AluY SINE Alu 2 307 -4 1435 159 0 122 chr1 59637726 59637805 -222555859 - AluJo SINE Alu -127 185 98 2308 94 7 7 chr1 59637805 59638103 -222555561 - AluSx SINE Alu -14 298 1 1435 159 0 122 chr1 59638103 59638260 -222555404 - AluJo SINE Alu -214 98 1 1965 82 23 12 chr1 59638324 59638581 -222555083 - AluSc SINE Alu -21 288 29 1324 99 6 0 chr1 59639433 59639605 -222554059 + AluSq SINE Alu 1 173 -140 240 222 56 0 chr1 59639608 59639680 -222553984 + L1M4 LINE L1 4463 4538 -1608 755 154 0 0 chr1 59639683 59639800 -222553864 + FLAM_C SINE Alu 2 118 -25 1465 214 51 11 chr1 59639817 59640051 -222553613 + L1M4 LINE L1 4534 4757 -1389 2389 100 0 3 chr1 59640051 59640362 -222553302 + AluSx SINE Alu 1 310 -2 1465 214 51 11 chr1 59640362 59640395 -222553269 + L1M4 LINE L1 4757 4787 -1359 2425 83 0 0 chr1 59640395 59640695 -222552969 + AluY SINE Alu 1 300 -11 1465 214 51 11 chr1 59640695 59640782 -222552882 + L1M4 LINE L1 4787 4903 -1243 428 101 0 43 chr1 59640786 59640855 -222552809 + Alu SINE Alu 222 287 -22 490 147 27 0 chr1 59640875 59640950 -222552714 + AluSg/x SINE Alu 210 286 -23 198 0 0 0 chr1 59640950 59640972 -222552692 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2255 98 0 7 chr1 59641115 59641410 -222552254 + AluSp SINE Alu 1 293 -20 825 65 9 19 chr1 59641425 59641533 -222552131 + AluSq/x SINE Alu 1 107 -205 899 89 0 0 chr1 59641533 59641645 -222552019 + L1P LINE L1 4049 4160 -1986 915 114 0 23 chr1 59641750 59641882 -222551782 - AluSq/x SINE Alu -183 129 1 494 276 10 47 chr1 59641882 59641966 -222551698 + MIR SINE MIR 78 164 -98 2156 117 3 0 chr1 59641966 59642277 -222551387 + AluSq SINE Alu 1 313 0 494 276 10 47 chr1 59642277 59642384 -222551280 + MIR SINE MIR 164 262 0 953 216 51 28 chr1 59642463 59642717 -222550947 + MIR SINE MIR 1 260 -2 249 33 0 0 chr1 59642853 59642883 -222550781 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 833 211 87 11 chr1 59642999 59643184 -222550480 + MER58A DNA MER1_type 10 208 -16 2252 113 0 0 chr1 59643437 59643745 -222549919 + AluSq SINE Alu 1 308 0 32 35 0 18 chr1 59643814 59643833 -222549831 + AT_rich Low_complexity Low_complexity 1 19 -37 2140 135 0 3 chr1 59643833 59644136 -222549528 + AluSx SINE Alu 1 302 -10 32 35 0 18 chr1 59644136 59644173 -222549491 + AT_rich Low_complexity Low_complexity 19 56 0 204 40 0 0 chr1 59644313 59644338 -222549326 + (A)n Simple_repeat Simple_repeat 1 25 0 1995 87 72 4 chr1 59644497 59644774 -222548890 - AluSq SINE Alu -17 296 1 995 121 0 0 chr1 59644802 59644934 -222548730 + AluSp SINE Alu 1 132 -181 199 358 37 0 chr1 59645031 59645112 -222548552 + L2 LINE L2 3188 3271 -1 519 258 129 22 chr1 59645988 59646213 -222547451 - MIR SINE MIR 0 262 14 372 100 17 0 chr1 59646326 59646386 -222547278 + MIR SINE MIR 92 152 -56 1053 90 56 7 chr1 59646411 59646555 -222547109 - AluSg/x SINE Alu -13 299 149 2645 152 56 123 chr1 59646670 59647387 -222546277 + L1MB7 LINE L1 5396 6064 -120 1298 105 0 12 chr1 59647394 59647565 -222546099 + AluSx SINE Alu 1 169 -143 24 0 0 0 chr1 59647566 59647590 -222546074 + AT_rich Low_complexity Low_complexity 1 24 0 2130 113 20 0 chr1 59647711 59648004 -222545660 + AluSq SINE Alu 1 299 -14 243 275 101 18 chr1 59648004 59648113 -222545551 + HAL1 LINE L1 158 275 -2232 1467 175 98 7 chr1 59648614 59648911 -222544753 + MER2 DNA MER2_type 1 324 -21 1510 177 37 14 chr1 59648951 59649245 -222544419 - AluJb SINE Alu -11 301 1 236 367 51 0 chr1 59649285 59649383 -222544281 - L2 LINE L2 -49 3223 3121 937 142 35 0 chr1 59649608 59649749 -222543915 + Tigger5 DNA MER2_type 76 221 -2102 * 2324 144 106 11 chr1 59649741 59650185 -222543479 + Tigger5 DNA MER2_type 1831 2316 -7 1615 152 59 17 chr1 59650216 59650505 -222543159 + AluSx SINE Alu 1 301 -11 1982 138 0 10 chr1 59650527 59650660 -222543004 + AluSg SINE Alu 1 134 -207 2255 97 0 7 chr1 59650660 59650959 -222542705 + AluSg SINE Alu 1 297 -13 1982 138 0 10 chr1 59650959 59651169 -222542495 + AluSg SINE Alu 134 341 0 2084 135 0 7 chr1 59651175 59651479 -222542185 + AluSx SINE Alu 2 303 -9 1697 161 13 33 chr1 59651531 59651830 -222541834 + AluJb SINE Alu 1 293 -19 279 256 167 52 chr1 59651846 59652120 -222541544 + L1MEc LINE L1 755 946 -5259 1854 110 38 41 chr1 59652120 59652260 -222541404 + AluSc SINE Alu 1 140 -169 2225 109 0 3 chr1 59652260 59652554 -222541110 + AluSg SINE Alu 5 297 -13 1854 110 38 41 chr1 59652554 59652704 -222540960 + AluSc SINE Alu 140 290 -19 279 256 167 52 chr1 59652704 59652777 -222540887 + L1MEc LINE L1 946 1009 -5196 2275 71 10 7 chr1 59652882 59653178 -222540486 + AluY SINE Alu 1 297 -14 2041 110 3 14 chr1 59653196 59653488 -222540176 + AluSx SINE Alu 1 289 -23 2197 115 0 19 chr1 59653495 59653807 -222539857 + AluSc SINE Alu 1 306 -3 1672 133 59 7 chr1 59653964 59654234 -222539430 - AluSx SINE Alu 0 312 29 229 0 0 0 chr1 59654234 59654262 -222539402 + Alu SINE Alu 104 131 -171 425 160 13 0 chr1 59654265 59654340 -222539324 + FLAM SINE Alu 40 115 -28 2155 112 3 10 chr1 59654561 59654694 -222538970 + AluSg SINE Alu 1 133 -177 2356 78 0 0 chr1 59654694 59655027 -222538637 + AluY SINE Alu 1 333 0 2155 112 3 10 chr1 59655027 59655197 -222538467 + AluSg SINE Alu 133 303 -7 427 215 74 44 chr1 59655223 59655358 -222538306 + L1MEc LINE L1 1607 1745 -4651 1052 66 0 36 chr1 59655358 59655495 -222538169 + AluSp SINE Alu 1 132 -181 2000 117 0 25 chr1 59655498 59655780 -222537884 + AluSg SINE Alu 1 275 -35 1577 84 70 0 chr1 59655781 59655995 -222537669 + AluY SINE Alu 65 293 -18 868 184 112 72 chr1 59656038 59656224 -222537440 - Charlie1 DNA MER1_type -2 2759 2555 1981 123 43 0 chr1 59656224 59656495 -222537169 + AluSg SINE Alu 1 284 -22 513 0 0 0 chr1 59656495 59656552 -222537112 + (TA)n Simple_repeat Simple_repeat 1 57 0 868 184 112 72 chr1 59656556 59656673 -222536991 - Charlie1 DNA MER1_type -206 2555 2444 310 162 96 1 chr1 59656906 59657134 -222536530 + AluJo SINE Alu 1 280 -22 31 26 0 0 chr1 59657149 59657187 -222536477 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr1 59657207 59657239 -222536425 + AT_rich Low_complexity Low_complexity 1 32 0 2019 127 0 57 chr1 59657239 59657555 -222536109 + AluSx SINE Alu 1 298 -14 697 227 32 5 chr1 59657629 59657814 -222535850 + L1MEc LINE L1 2373 2562 -3653 475 128 53 21 chr1 59657826 59657920 -222535744 + AluJo SINE Alu 40 136 -176 410 232 56 32 chr1 59657934 59658059 -222535605 + L1M4 LINE L1 4212 4339 -1807 380 123 0 33 chr1 59658073 59658144 -222535520 + Alu SINE Alu 1 47 -261 308 198 165 0 chr1 59658153 59658274 -222535390 + L1M4 LINE L1 4369 4509 -1637 33 0 0 0 chr1 59658324 59658357 -222535307 + AT_rich Low_complexity Low_complexity 1 33 0 2468 71 0 3 chr1 59658877 59659187 -222534477 + AluSc SINE Alu 1 309 0 21 71 0 0 chr1 59660152 59660194 -222533470 + GC_rich Low_complexity Low_complexity 1 42 0 369 0 0 0 chr1 59660383 59660402 -222533262 + (CA)n Simple_repeat Simple_repeat 1 60 0 369 0 0 0 chr1 59660402 59660443 -222533221 + (CA)n Simple_repeat Simple_repeat 2 42 0 615 291 57 13 chr1 59660803 59661030 -222532634 + MIR SINE MIR 18 254 -8 232 329 70 28 chr1 59661123 59661266 -222532398 - MIR SINE MIR -86 176 28 2381 74 0 3 chr1 59661277 59661573 -222532091 - AluSc SINE Alu -10 299 5 1879 80 140 27 chr1 59661588 59661888 -222531776 - MER51B LTR ERV1 0 377 44 1879 138 57 14 chr1 59661891 59662264 -222531400 - MER41-int LTR ERV1 -2775 3171 1482 1964 149 10 13 chr1 59662281 59662589 -222531075 + AluSx SINE Alu 1 307 -5 2087 125 10 7 chr1 59662591 59662896 -222530768 + AluSx SINE Alu 1 306 -6 2902 3 0 0 chr1 59662899 59663203 -222530461 + AluYa5 SINE Alu 1 304 -7 2180 135 0 0 chr1 59663344 59663648 -222530016 + AluSq SINE Alu 1 304 -9 2181 132 3 0 chr1 59663650 59663961 -222529703 + AluSx SINE Alu 1 312 0 252 98 0 49 chr1 59664110 59664151 -222529513 - AluYb8 SINE Alu -167 141 103 1398 101 15 10 chr1 59664151 59664350 -222529314 + AluSq SINE Alu 95 294 -19 674 241 92 15 chr1 59664376 59664571 -222529093 + L1MC4a LINE L1 5517 5726 -2082 1340 163 199 11 chr1 59664571 59664848 -222528816 - MSTB LTR MaLR -97 329 1 667 242 11 22 chr1 59664848 59664893 -222528771 + L1MC4a LINE L1 5735 5779 -2029 688 194 8 22 chr1 59664893 59665027 -222528637 + FLAM_C SINE Alu 1 132 -1 667 242 11 22 chr1 59665027 59665163 -222528501 + L1MC4a LINE L1 5779 5914 -1894 772 186 0 21 chr1 59665170 59665315 -222528349 + FLAM_C SINE Alu 2 143 0 1691 186 11 0 chr1 59665460 59665745 -222527919 - AluJb SINE Alu -24 288 1 230 194 11 75 chr1 59665794 59665887 -222527777 + A-rich Low_complexity Low_complexity 3 89 0 2316 120 0 0 chr1 59665897 59666206 -222527458 + AluSx SINE Alu 1 309 -3 1828 150 11 3 chr1 59666283 59666569 -222527095 - AluJo SINE Alu -23 289 2 871 148 22 0 chr1 59666590 59666725 -222526939 - FLAM_C SINE Alu 0 143 6 942 229 0 0 chr1 59666734 59666909 -222526755 - FAM SINE Alu 0 175 1 242 152 0 0 chr1 59666909 59666955 -222526709 - L1MEd LINE L1 -6016 103 58 180 77 0 0 chr1 59667649 59667675 -222525989 + (T)n Simple_repeat Simple_repeat 1 26 0 785 228 29 6 chr1 59667676 59667847 -222525817 - FAM SINE Alu 0 175 1 254 111 0 0 chr1 59667919 59667955 -222525709 - U2 snRNA snRNA -152 36 1 843 144 116 153 chr1 59667995 59668315 -222525349 - MER4C LTR ERV1 0 465 158 2351 65 0 3 chr1 59668320 59668610 -222525054 + AluSx SINE Alu 1 289 -23 525 66 145 0 chr1 59668614 59668690 -222524974 + MER101 LTR ERV1 388 474 0 195 306 74 70 chr1 59669938 59670222 -222523442 + L2 LINE L2 2979 3263 -9 2036 114 31 3 chr1 59670350 59670639 -222523025 + AluSx SINE Alu 1 297 -15 942 141 99 58 chr1 59671049 59671240 -222522424 - AluJo SINE Alu -14 298 100 1178 117 6 0 chr1 59671299 59671462 -222522202 - AluSg/x SINE Alu -14 296 133 2449 84 0 3 chr1 59671463 59671774 -222521890 - AluY SINE Alu -1 310 1 249 139 0 0 chr1 59671790 59671826 -222521838 - HsTC2 DNA Tc2 -1772 126 91 317 188 124 142 chr1 59672048 59672194 -222521470 + MER112 DNA MER1_type 40 182 -78 1639 184 3 10 chr1 59672194 59672487 -222521177 + AluJb SINE Alu 1 291 -21 317 188 124 142 chr1 59672487 59672558 -222521106 + MER112 DNA MER1_type 182 253 -7 184 308 51 0 chr1 59672775 59672853 -222520811 - L2 LINE L2 -60 3253 3172 716 261 178 63 chr1 59672880 59673385 -222520279 + HAL1 LINE L1 5 567 -1940 955 227 113 40 chr1 59673502 59674423 -222519241 + HAL1 LINE L1 743 1808 -699 939 283 100 23 chr1 59674715 59675154 -222518510 + L1MC4a LINE L1 6476 6948 -860 835 150 55 0 chr1 59675156 59675283 -222518381 + AluJb SINE Alu 1 134 -178 788 193 73 58 chr1 59675305 59675579 -222518085 + L1MC5 LINE L1 6927 7204 -757 1795 163 56 74 chr1 59675579 59676448 -222517216 + Charlie1a DNA MER1_type 1 957 -498 2649 58 0 0 chr1 59676452 59676763 -222516901 - AluY SINE Alu 0 311 1 26 0 0 0 chr1 59676772 59676798 -222516866 + AT_rich Low_complexity Low_complexity 1 26 0 1836 122 22 22 chr1 59676798 59677076 -222516588 + AluSx SINE Alu 1 278 -34 422 228 85 110 chr1 59677095 59677251 -222516413 + HAL1 LINE L1 793 951 -1556 1887 149 24 0 chr1 59677251 59677539 -222516125 + AluSx SINE Alu 1 295 -17 422 228 85 110 chr1 59677539 59677554 -222516110 + HAL1 LINE L1 951 965 -1542 1844 134 10 34 chr1 59677554 59677871 -222515793 + AluSx SINE Alu 1 310 0 422 228 85 110 chr1 59677871 59677969 -222515695 + HAL1 LINE L1 965 1057 -1450 1143 246 77 38 chr1 59678021 59678528 -222515136 + HAL1 LINE L1 1283 1809 -698 250 241 56 19 chr1 59678676 59678784 -222514880 + HAL1 LINE L1 2236 2347 -160 1524 183 20 10 chr1 59678785 59679080 -222514584 + AluJb SINE Alu 1 298 -14 200 222 0 37 chr1 59679686 59679740 -222513924 - L2 LINE L2 -6 3266 3215 2265 234 57 40 chr1 59679978 59680554 -222513110 - MLT1E LTR MaLR -3 590 5 189 0 0 0 chr1 59680893 59680914 -222512750 + (A)n Simple_repeat Simple_repeat 1 21 0 2084 101 0 18 chr1 59680917 59681193 -222512471 + AluSc SINE Alu 1 271 -38 342 0 0 0 chr1 59681195 59681233 -222512431 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 248 228 0 0 chr1 59681937 59681994 -222511670 + MIR SINE MIR 3 59 -203 2348 99 3 34 chr1 59682001 59682324 -222511340 - AluSq SINE Alu 0 313 1 773 209 122 32 chr1 59682581 59682859 -222510805 + MLT1F LTR MaLR 240 542 0 451 250 0 0 chr1 59682860 59682964 -222510700 + MIR SINE MIR 151 254 -8 270 213 271 58 chr1 59683387 59683542 -222510122 + MIR SINE MIR 47 234 -28 1572 107 5 0 chr1 59683910 59684115 -222509549 - AluSx SINE Alu -106 206 1 326 355 112 23 chr1 59684229 59684443 -222509221 + L2 LINE L2 2969 3201 -71 2458 78 0 0 chr1 59684525 59684820 -222508844 + AluSg SINE Alu 1 295 -15 23 0 0 0 chr1 59685708 59685731 -222507933 + AT_rich Low_complexity Low_complexity 1 23 0 2358 98 0 10 chr1 59685765 59686072 -222507592 - AluSq SINE Alu -9 304 1 2496 70 0 0 chr1 59686294 59686592 -222507072 - AluY SINE Alu -13 298 1 451 119 0 0 chr1 59687811 59687878 -222505786 + AluS SINE Alu 2 68 -244 1137 87 0 0 chr1 59687879 59688017 -222505647 - AluSq/x SINE Alu -174 138 1 368 272 137 57 chr1 59688086 59688271 -222505393 - L1ME4a LINE L1 -8 6113 5944 798 161 101 0 chr1 59688271 59688420 -222505244 - FAM SINE Alu -11 164 1 368 272 137 57 chr1 59688420 59688490 -222505174 - L1ME4a LINE L1 -177 5944 5881 2087 123 3 10 chr1 59688490 59688783 -222504881 + AluY SINE Alu 1 291 -20 368 272 137 57 chr1 59688783 59688985 -222504679 - L1ME4a LINE L1 -240 5881 5697 2172 140 0 10 chr1 59688985 59689299 -222504365 - AluJb SINE Alu -1 311 1 1635 147 56 4 chr1 59689301 59689553 -222504111 - AluJb SINE Alu -14 298 34 368 272 137 57 chr1 59689553 59689674 -222503990 - L1ME4a LINE L1 -424 5697 5483 32 91 0 0 chr1 59689757 59689845 -222503819 + AT_rich Low_complexity Low_complexity 1 88 0 2146 115 16 29 chr1 59689845 59690157 -222503507 + AluSx SINE Alu 1 308 -4 759 224 37 6 chr1 59690171 59690332 -222503332 + FRAM SINE Alu 1 166 0 262 235 262 11 chr1 59690373 59690556 -222503108 - HAL1 LINE L1 -110 2397 2169 307 312 14 14 chr1 59691376 59691434 -222502230 - L1MC4a LINE L1 -1946 5862 5805 2118 82 71 0 chr1 59691434 59691715 -222501949 + AluY SINE Alu 1 301 -10 307 312 14 14 chr1 59691715 59691797 -222501867 - L1MC4a LINE L1 -2002 5806 5722 534 181 50 26 chr1 59691817 59692011 -222501653 - L1MA9 LINE L1 -22 6290 5989 4746 39 5 0 chr1 59692442 59693030 -222500634 - LTR10C LTR ERV1 0 591 1 2159 100 4 4 chr1 59693180 59693491 -222500173 - AluSg SINE Alu 0 311 1 1886 170 0 26 chr1 59694070 59694381 -222499283 + AluJb SINE Alu 1 303 -9 1159 169 188 8 chr1 59694391 59694646 -222499018 + AluJb SINE Alu 2 302 0 623 138 9 0 chr1 59694685 59694794 -222498870 - L1MB7 LINE L1 -21 6163 6054 2027 117 0 7 chr1 59694794 59695067 -222498597 - AluSx SINE Alu -18 294 24 1570 160 31 19 chr1 59695106 59695424 -222498240 - L1MB7 LINE L1 -88 6096 5775 545 196 0 0 chr1 59695479 59695571 -222498093 - FLAM_C SINE Alu -24 119 28 240 192 58 0 chr1 59695571 59695623 -222498041 - L1MB7 LINE L1 -396 5788 5734 301 143 143 0 chr1 59695624 59695694 -222497970 - L1MB7 LINE L1 -406 5778 5699 892 176 0 0 chr1 59695695 59695837 -222497827 + FRAM SINE Alu 4 145 -31 385 301 94 35 chr1 59695958 59696161 -222497503 - L1M4 LINE L1 -1299 4847 4633 1587 214 3 19 chr1 59696408 59696717 -222496947 - AluJo SINE Alu -8 304 1 1691 150 51 27 chr1 59696788 59697081 -222496583 + AluJb SINE Alu 11 310 -2 1550 201 13 20 chr1 59697101 59697429 -222496235 + AluJb SINE Alu 2 327 0 21 0 0 0 chr1 59697449 59697470 -222496194 + AT_rich Low_complexity Low_complexity 1 21 0 935 215 9 76 chr1 59697490 59697713 -222495951 - AluJo SINE Alu -97 215 8 221 362 9 0 chr1 59697950 59698055 -222495609 - MIR3 SINE MIR -4 204 99 340 310 42 7 chr1 59698179 59698321 -222495343 + L1ME LINE L1 52 198 -5921 256 331 91 52 chr1 59698618 59699101 -222494563 + L1ME LINE L1 449 950 -5169 2164 100 7 4 chr1 59699106 59699385 -222494279 + AluSx SINE Alu 16 295 -17 22 56 0 0 chr1 59699872 59699908 -222493756 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr1 59699928 59699957 -222493707 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr1 59699972 59699997 -222493667 + (T)n Simple_repeat Simple_repeat 1 25 0 1765 40 0 5 chr1 59700108 59700309 -222493355 - AluY SINE Alu -111 200 1 216 0 0 0 chr1 59700575 59700599 -222493065 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 307 294 0 0 chr1 59700708 59700776 -222492888 + AluJ/FRAM SINE Alu 221 288 -14 922 214 77 55 chr1 59700776 59701334 -222492330 - L1M4 LINE L1 -1001 5145 4700 2129 114 17 17 chr1 59701334 59701632 -222492032 - AluSq SINE Alu -15 298 1 922 214 77 55 chr1 59701632 59701659 -222492005 - L1M4 LINE L1 -1446 4700 4675 396 238 15 83 chr1 59701634 59701826 -222491838 - L1M4 LINE L1 -2214 3932 3761 * 852 115 0 0 chr1 59701826 59701956 -222491708 - FLAM_C SINE Alu -3 130 1 396 238 15 83 chr1 59701956 59702028 -222491636 - L1M4 LINE L1 -2385 3761 3686 583 179 0 0 chr1 59702029 59702124 -222491540 - AluJ/FLAM SINE Alu -215 97 3 469 233 31 152 chr1 59702124 59702276 -222491388 - L1M4 LINE L1 -2475 3671 3502 2442 79 13 25 chr1 59702276 59702593 -222491071 - AluSp SINE Alu 0 313 1 469 233 31 152 chr1 59702593 59702973 -222490691 - L1M4 LINE L1 -2644 3502 3234 2380 82 3 25 chr1 59702973 59703290 -222490374 - AluSg SINE Alu 0 310 1 469 233 31 152 chr1 59703290 59703426 -222490238 - L1M4 LINE L1 -2912 3234 3083 901 144 58 0 chr1 59703433 59703572 -222490092 - AluJo SINE Alu -165 147 1 411 73 0 0 chr1 59703576 59703631 -222490033 + (TG)n Simple_repeat Simple_repeat 2 56 0 447 256 0 0 chr1 59703635 59703725 -222489939 + L1MC4 LINE L1 6614 6703 -1339 354 233 14 0 chr1 59703725 59703798 -222489866 + L1MCa LINE L1 1995 2068 -4358 320 318 11 11 chr1 59703729 59703817 -222489847 - L1MC4 LINE L1 -1339 6703 6616 * 234 0 0 0 chr1 59703819 59703845 -222489819 + (TG)n Simple_repeat Simple_repeat 2 27 0 2117 141 3 10 chr1 59703848 59704153 -222489511 - AluSx SINE Alu -9 303 1 1336 47 0 0 chr1 59704179 59704349 -222489315 - L1PA5 LINE L1 0 6154 5985 247 246 0 0 chr1 59704350 59704407 -222489257 + L2 LINE L2 3257 3313 0 1786 174 7 7 chr1 59705009 59705303 -222488361 - AluJb SINE Alu -18 294 1 1105 288 80 49 chr1 59705363 59706130 -222487534 + L2 LINE L2 2482 3272 -41 468 295 54 54 chr1 59706212 59706453 -222487211 + L2 LINE L2 3036 3276 -37 310 343 70 17 chr1 59706555 59706727 -222486937 - MIR SINE MIR -58 204 24 269 284 198 0 chr1 59706806 59706922 -222486742 - MIR SINE MIR -84 178 40 25 0 0 0 chr1 59706966 59706991 -222486673 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 59707192 59707227 -222486437 + AT_rich Low_complexity Low_complexity 1 35 0 2273 80 47 7 chr1 59707303 59707602 -222486062 - AluY SINE Alu 0 311 1 259 153 17 17 chr1 59707671 59707730 -222485934 - L1MC4 LINE L1 -1 8041 7983 457 97 0 0 chr1 59707830 59707902 -222485762 + AluSp/q SINE Alu 236 307 -6 2206 115 6 25 chr1 59707911 59708225 -222485439 + AluSx SINE Alu 1 308 -4 1957 154 0 0 chr1 59708278 59708564 -222485100 + AluJo SINE Alu 12 297 -15 1866 170 67 7 chr1 59708572 59708977 -222484687 + Charlie1 DNA MER1_type 2333 2761 0 825 192 83 73 chr1 59708989 59709291 -222484373 + L1MC5 LINE L1 7221 7525 -436 394 287 18 42 chr1 59709381 59709548 -222484116 + L1ME3A LINE L1 5956 6118 -52 * 561 276 57 50 chr1 59709545 59710005 -222483659 + HAL1 LINE L1 2045 2507 0 445 174 10 51 chr1 59710008 59710106 -222483558 - L1ME3A LINE L1 -117 6053 5960 309 157 169 24 chr1 59710257 59710340 -222483324 - MER112 DNA MER1_type -13 247 153 962 230 115 64 chr1 59710353 59710802 -222482862 - MER41B LTR ERV1 -13 570 87 404 213 41 25 chr1 59710855 59710977 -222482687 - MER112 DNA MER1_type -135 125 2 202 388 45 0 chr1 59711097 59711231 -222482433 + L2 LINE L2 2596 2735 -579 4334 122 82 50 chr1 59711231 59711886 -222481778 - L1MC1 LINE L1 0 6333 5700 1952 152 7 7 chr1 59711886 59712182 -222481482 + AluJb SINE Alu 12 307 -5 4334 122 82 50 chr1 59712182 59712279 -222481385 - L1MC1 LINE L1 -633 5700 5608 1997 152 30 0 chr1 59712279 59712581 -222481083 - AluSx SINE Alu -1 311 1 4334 122 82 50 chr1 59712581 59712706 -222480958 - L1MC1 LINE L1 -725 5608 5427 2021 136 3 29 chr1 59712736 59713044 -222480620 + AluJb SINE Alu 3 302 -10 860 250 75 0 chr1 59713104 59713316 -222480348 + MIR SINE MIR 34 261 -1 216 0 0 0 chr1 59713354 59713378 -222480286 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 262 139 0 0 chr1 59713381 59713417 -222480247 - Alu SINE Alu -20 281 246 409 252 49 0 chr1 59713821 59713944 -222479720 - MLT1F1 LTR MaLR -130 437 309 1415 238 99 5 chr1 59715090 59715514 -222478150 - L1MC3 LINE L1 0 7785 7322 642 173 49 111 chr1 59715749 59715924 -222477740 - L1MC3 LINE L1 -610 7175 7016 2081 120 17 0 chr1 59715924 59716216 -222477448 - AluSq SINE Alu 0 313 17 642 173 49 111 chr1 59716216 59716266 -222477398 - L1MC3 LINE L1 -769 7016 6964 2005 161 0 0 chr1 59716269 59716568 -222477096 - AluSx SINE Alu -13 299 1 643 131 0 0 chr1 59716582 59716681 -222476983 - AluJb SINE Alu -10 302 204 362 152 152 33 chr1 59716683 59716775 -222476889 + AluJb SINE Alu 191 293 -9 812 85 8 0 chr1 59716775 59716893 -222476771 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 981 291 276 15 chr1 59717057 59717811 -222475853 - L1MC4 LINE L1 -432 7610 6660 383 274 0 24 chr1 59717825 59718076 -222475588 + (CA)n Simple_repeat Simple_repeat 1 244 0 555 242 0 0 chr1 59718113 59718291 -222475373 + (CA)n Simple_repeat Simple_repeat 2 179 0 241 313 100 0 chr1 59718315 59718465 -222475199 - L1MC4a LINE L1 -1202 6606 6442 183 98 0 59 chr1 59719373 59719424 -222474240 + (CCCCG)n Simple_repeat Simple_repeat 1 48 0 433 305 39 17 chr1 59719595 59719828 -222473836 + L1MC2 LINE L1 4276 4513 -1633 309 286 64 2 chr1 59719885 59720028 -222473636 + L1ME2 LINE L1 6007 6164 0 891 131 0 0 chr1 59720188 59720310 -222473354 + FRAM SINE Alu 33 154 -22 685 186 13 6 chr1 59720315 59720471 -222473193 + L1MC2 LINE L1 5156 5312 -834 2279 123 0 0 chr1 59720515 59720823 -222472841 + AluSc SINE Alu 1 308 -1 246 48 0 0 chr1 59720853 59720895 -222472769 + L1M1 LINE L1 2255 2296 -5269 4995 158 42 20 chr1 59720899 59721405 -222472259 + L1MC2 LINE L1 5319 5812 -532 2079 95 3 14 chr1 59721405 59721733 -222471931 + AluY SINE Alu 1 325 0 4995 158 42 20 chr1 59721733 59722220 -222471444 + L1MC2 LINE L1 5812 6335 -9 355 296 87 52 chr1 59722230 59722517 -222471147 - L1MEc LINE L1 -4391 2005 1709 2518 56 3 7 chr1 59722517 59722821 -222470843 - AluY SINE Alu -8 303 1 1152 68 0 0 chr1 59722821 59722953 -222470711 - AluSq/x SINE Alu -178 135 4 525 288 123 42 chr1 59722957 59723001 -222470663 - L1MEc LINE L1 -5523 873 834 2301 92 3 0 chr1 59723001 59723295 -222470369 - AluSc SINE Alu -14 295 1 525 288 123 42 chr1 59723295 59723933 -222469731 - L1MEc LINE L1 -5562 834 136 242 178 26 79 chr1 59724720 59724872 -222468792 + (CTGGGG)n Simple_repeat Simple_repeat 5 148 0 277 94 22 106 chr1 59724954 59725134 -222468530 + (CTGGGG)n Simple_repeat Simple_repeat 1 165 0 1974 138 7 0 chr1 59728156 59728447 -222465217 - AluJb SINE Alu -19 293 1 435 228 49 0 chr1 59729184 59729307 -222464357 - MLT1F1 LTR MaLR -130 437 309 216 147 0 80 chr1 59731115 59731190 -222462474 + (TGGGGG)n Simple_repeat Simple_repeat 6 74 0 420 268 18 54 chr1 59732025 59732193 -222461471 - L1MB5 LINE L1 -8 6166 6005 364 250 21 0 chr1 59732280 59732376 -222461288 - L1MC4 LINE L1 -1219 6823 6726 205 271 17 90 chr1 59737182 59737359 -222456305 + C-rich Low_complexity Low_complexity 4 167 0 * 255 270 8 40 chr1 59737316 59737442 -222456222 + CT-rich Low_complexity Low_complexity 1 122 0 187 306 0 20 chr1 59741317 59741366 -222452298 + L2 LINE L2 3225 3272 0 237 326 0 0 chr1 59749125 59749223 -222444441 + G-rich Low_complexity Low_complexity 2 99 0 196 250 0 0 chr1 59749652 59749692 -222443972 + L2 LINE L2 3269 3308 -5 599 239 183 32 chr1 59752300 59752672 -222440992 + MLT1C LTR MaLR 6 433 -34 264 59 0 0 chr1 59754188 59754222 -222439442 + (TGG)n Simple_repeat Simple_repeat 1 34 0 185 170 0 75 chr1 59757164 59757217 -222436447 + L3 LINE CR1 1102 1150 -427 239 340 54 35 chr1 59758497 59758700 -222434964 - MIR SINE MIR -17 245 39 295 268 30 24 chr1 59760449 59760613 -222433051 + (CCCCAG)n Simple_repeat Simple_repeat 2 166 0 * 413 166 16 123 chr1 59760509 59760761 -222432903 + (CCCCG)n Simple_repeat Simple_repeat 1 225 0 1621 160 25 44 chr1 59766117 59766435 -222427229 + AluJb SINE Alu 1 312 0 201 208 234 26 chr1 59767741 59767818 -222425846 + MIR SINE MIR 104 196 -12 246 217 0 95 chr1 59769761 59769950 -222423714 + C-rich Low_complexity Low_complexity 3 173 0 258 323 32 6 chr1 59769981 59770139 -222423525 + (CCCG)n Simple_repeat Simple_repeat 2 163 0 218 322 22 33 chr1 59770283 59770541 -222423123 + (CCCG)n Simple_repeat Simple_repeat 1 255 0 607 294 118 6 chr1 59770901 59771316 -222422348 + L1MB5 LINE L1 5661 6132 -42 220 312 13 32 chr1 59774259 59774416 -222419248 + (TG)n Simple_repeat Simple_repeat 1 154 0 2318 82 0 7 chr1 59776211 59776517 -222417147 + AluSg SINE Alu 1 304 -6 1923 86 0 0 chr1 59776517 59776760 -222416904 + AluSq SINE Alu 1 243 -70 442 239 8 44 chr1 59777606 59777860 -222415804 - MLT1B LTR MaLR -44 346 24 296 217 0 72 chr1 59778125 59778263 -222415401 + G-rich Low_complexity Low_complexity 1 128 0 900 263 115 12 chr1 59778311 59778649 -222415015 + MLT1A2 LTR MaLR 1 373 -1 273 91 0 61 chr1 59781276 59781342 -222412322 + (TGGGGG)n Simple_repeat Simple_repeat 5 66 0 639 237 51 14 chr1 59782581 59782796 -222410868 + Charlie1 DNA MER1_type 2457 2679 -82 22 0 0 0 chr1 59986291 59986313 -222207351 + AT_rich Low_complexity Low_complexity 1 22 0 1743 198 7 3 chr1 59986317 59986610 -222207054 + AluJb SINE Alu 3 296 -16 677 172 0 0 chr1 59986610 59986732 -222206932 - L1MB3 LINE L1 -356 5827 5706 379 306 38 21 chr1 59986718 59986953 -222206711 - L1ME4a LINE L1 -224 5897 5659 * 287 209 0 81 chr1 59987331 59987417 -222206247 - AluJ/FRAM SINE Alu -7 295 224 191 77 58 19 chr1 59987575 59987627 -222206037 + (TA)n Simple_repeat Simple_repeat 2 55 0 2095 121 24 3 chr1 59987905 59988203 -222205461 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr1 59988282 59988310 -222205354 + AT_rich Low_complexity Low_complexity 1 28 0 2411 81 3 3 chr1 59988785 59989082 -222204582 - AluSg SINE Alu -13 297 1 1458 248 142 20 chr1 59989248 59989469 -222204195 - L2 LINE L2 -19 3294 3101 1642 65 0 5 chr1 59989469 59989670 -222203994 - AluY SINE Alu -16 295 96 1458 248 142 20 chr1 59989670 59990106 -222203558 - L2 LINE L2 -212 3101 2572 260 331 173 0 chr1 59990322 59990455 -222203209 - MIR SINE MIR -10 252 97 321 325 48 63 chr1 59990473 59990867 -222202797 - L2 LINE L2 -72 3200 2813 320 194 0 0 chr1 59991609 59991676 -222201988 + AluJ/FLAM SINE Alu 33 99 -203 611 226 44 69 chr1 59992208 59992412 -222201252 + MIR SINE MIR 29 227 -35 1443 271 216 14 chr1 59992418 59992993 -222200671 + L2 LINE L2 1778 2468 -846 414 243 226 11 chr1 59994319 59994500 -222199164 + MIR SINE MIR 37 256 -6 425 271 89 12 chr1 59994681 59994879 -222198785 + MIR SINE MIR 4 261 -1 2211 110 3 0 chr1 59995245 59995537 -222198127 - AluSx SINE Alu -19 293 1 594 235 64 16 chr1 59995623 59995810 -222197854 - L2 LINE L2 0 3313 3118 23 0 0 0 chr1 59996059 59996082 -222197582 + AT_rich Low_complexity Low_complexity 1 23 0 322 208 0 0 chr1 59996183 59996236 -222197428 + MER58A DNA MER1_type 2 54 -170 1251 276 149 26 chr1 59996256 59996868 -222196796 - L1ME3 LINE L1 -2 6160 5474 2970 218 76 35 chr1 59996876 59997731 -222195933 - L1ME1 LINE L1 -5 6161 5272 302 176 0 29 chr1 59997767 59997835 -222195829 - L1ME1 LINE L1 -864 5282 5217 867 175 62 6 chr1 59997842 59998019 -222195645 + MER58A DNA MER1_type 38 224 0 2461 205 75 25 chr1 59998031 59998588 -222195076 - MLT1E LTR MaLR -1 592 8 265 279 78 60 chr1 59998594 59998863 -222194801 - L1ME4a LINE L1 -114 6007 5734 278 338 78 46 chr1 59999239 59999523 -222194141 - L2 LINE L2 -7 3265 2973 368 322 109 66 chr1 59999561 59999881 -222193783 + L2 LINE L2 2935 3268 -4 27 0 0 0 chr1 60002466 60002493 -222191171 + AT_rich Low_complexity Low_complexity 1 27 0 361 239 290 7 chr1 60002915 60003070 -222190594 + MIR3 SINE MIR 3 201 -7 318 305 138 0 chr1 60003695 60003862 -222189802 + MIR SINE MIR 67 256 -6 703 328 166 13 chr1 60003955 60004453 -222189211 - L2 LINE L2 -1 3312 2745 1028 221 144 13 chr1 60004466 60004764 -222188900 - MLT1I LTR MaLR -70 339 3 883 277 176 69 chr1 60004791 60005599 -222188065 - L2 LINE L2 -611 2703 1810 1827 108 89 4 chr1 60006252 60006531 -222187133 + AluSx SINE Alu 1 301 0 205 333 129 14 chr1 60006822 60006969 -222186695 + L2 LINE L2 3107 3270 -2 2235 118 0 3 chr1 60007157 60007461 -222186203 + AluSx SINE Alu 1 303 -9 277 280 123 66 chr1 60007474 60007717 -222185947 + MIR SINE MIR 1 257 -5 2111 98 0 20 chr1 60007766 60008063 -222185601 - AluSc SINE Alu -18 291 1 423 283 96 12 chr1 60009757 60009923 -222183741 + MIR SINE MIR 34 213 -49 2674 200 65 30 chr1 60009944 60010549 -222183115 - MLT1E2 LTR MaLR 0 626 1 207 200 25 0 chr1 60010592 60010632 -222183032 - L2 LINE L2 -94 3178 3138 360 263 76 17 chr1 60011208 60011326 -222182338 - MIR SINE MIR 0 262 138 271 299 124 0 chr1 60011735 60011832 -222181832 + MIR SINE MIR 154 262 0 192 245 20 20 chr1 60012076 60012125 -222181539 + MIR SINE MIR 34 82 -180 244 325 76 19 chr1 60012144 60012301 -222181363 + MIR SINE MIR 10 175 -87 198 0 0 0 chr1 60012379 60012401 -222181263 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 204 265 0 0 chr1 60013300 60013349 -222180315 + G-rich Low_complexity Low_complexity 50 98 0 286 194 0 30 chr1 60013937 60014004 -222179660 - MIR3 SINE MIR -54 154 90 232 242 31 112 chr1 60015071 60015232 -222178432 + L2 LINE L2 2876 3023 -249 209 235 39 147 chr1 60015259 60015361 -222178303 + MIR3 SINE MIR 102 192 -16 284 290 225 7 chr1 60015933 60016071 -222177593 - MIR SINE MIR -67 195 28 1851 131 52 24 chr1 60016262 60016552 -222177112 + AluJo SINE Alu 1 298 -14 236 286 110 11 chr1 60016556 60016647 -222177017 - MIR SINE MIR -79 129 30 209 295 0 0 chr1 60016978 60017039 -222176625 + L2 LINE L2 2917 2977 -295 901 163 51 126 chr1 60017101 60017176 -222176488 - MER33 DNA MER1_type -2261 324 245 1952 135 17 7 chr1 60017176 60017465 -222176199 - AluJb SINE Alu -10 302 11 901 163 51 126 chr1 60017465 60017739 -222175925 - MER33 DNA MER1_type -2340 245 1 263 269 140 0 chr1 60017846 60017939 -222175725 + MIR SINE MIR 49 154 -108 263 234 223 0 chr1 60018566 60018660 -222175004 + L2 LINE L2 3174 3288 -25 1850 177 3 0 chr1 60018817 60019116 -222174548 + AluJo SINE Alu 3 302 -10 383 304 170 0 chr1 60019240 60019434 -222174230 - MIR SINE MIR -3 259 33 246 187 0 38 chr1 60019793 60019846 -222173818 - MIR SINE MIR -65 143 102 298 197 0 0 chr1 60020428 60020489 -222173175 - L2 LINE L2 -292 2980 2920 195 139 0 0 chr1 60021052 60021088 -222172576 + (CTG)n Simple_repeat Simple_repeat 3 38 0 307 282 79 73 chr1 60022062 60022392 -222171272 - L2 LINE L2 -2 3270 2939 229 244 33 44 chr1 60022477 60022567 -222171097 + L2 LINE L2 3197 3285 -28 447 39 0 39 chr1 60023248 60023325 -222170339 + (TAAAA)n Simple_repeat Simple_repeat 2 75 0 213 307 45 23 chr1 60023769 60023857 -222169807 + L2 LINE L2 2231 2320 -994 2133 98 0 4 chr1 60023958 60024233 -222169431 + AluSq SINE Alu 1 274 -39 264 301 0 0 chr1 60024845 60024928 -222168736 - L1ME4a LINE L1 -69 6052 5970 * 342 226 94 9 chr1 60024923 60025029 -222168635 - L1MB7 LINE L1 0 6184 6070 232 309 34 51 chr1 60026064 60026242 -222167422 - L2 LINE L2 -173 3099 2925 244 350 82 10 chr1 60026260 60026454 -222167210 + L2 LINE L2 2119 2326 -988 258 86 0 0 chr1 60026719 60026754 -222166910 + U2 snRNA snRNA 1 35 -153 319 194 121 73 chr1 60027705 60027829 -222165835 + L2 LINE L2 3172 3301 -12 210 129 81 0 chr1 60027840 60027902 -222165762 + (TA)n Simple_repeat Simple_repeat 2 68 0 182 329 76 0 chr1 60027921 60028000 -222165664 - L2 LINE L2 -29 3243 3159 1459 172 36 33 chr1 60030902 60031204 -222162460 + AluJo SINE Alu 10 312 0 519 247 16 54 chr1 60031657 60031827 -222161837 + MIR SINE MIR 23 194 -62 306 125 0 0 chr1 60033283 60033331 -222160333 + (GGA)n Simple_repeat Simple_repeat 1 48 0 282 331 15 31 chr1 60033613 60033743 -222159921 - L2 LINE L2 -1019 2295 2168 257 292 13 0 chr1 60033834 60033990 -222159674 + (CA)n Simple_repeat Simple_repeat 1 158 0 274 331 35 14 chr1 60034012 60034157 -222159507 + (CATG)n Simple_repeat Simple_repeat 3 150 0 299 298 164 58 chr1 60034165 60034440 -222159224 - L2 LINE L2 -1315 1999 1696 378 339 83 10 chr1 60037191 60037383 -222156281 + L3 LINE CR1 1328 1533 -44 191 235 20 0 chr1 60037656 60037707 -222155957 + MIR SINE MIR 81 132 -76 195 353 35 0 chr1 60038508 60038593 -222155071 + MIR3 SINE MIR 102 189 -19 258 327 56 0 chr1 60038789 60038918 -222154746 + MIR SINE MIR 23 164 -62 186 328 0 0 chr1 60039413 60039471 -222154193 + L3b LINE CR1 1323 1380 -203 233 263 172 10 chr1 60039482 60039581 -222154083 + MIR3 SINE MIR 15 129 -79 345 274 38 19 chr1 60039800 60039906 -222153758 + L2 LINE L2 3206 3313 0 217 267 0 78 chr1 60039905 60039995 -222153669 - MIR SINE MIR -64 144 62 * 579 186 40 68 chr1 60040327 60040428 -222153236 + MER45A DNA AcHobo 7 103 -1478 1544 176 0 37 chr1 60040428 60040755 -222152909 - AluSx SINE Alu 0 316 1 579 186 40 68 chr1 60040755 60040829 -222152835 + MER45A DNA AcHobo 103 178 0 254 232 73 53 chr1 60042162 60042316 -222151348 - MIR SINE MIR -65 143 20 * 428 269 208 19 chr1 60042256 60042468 -222151196 + MIR SINE MIR 11 262 0 185 196 0 65 chr1 60042872 60042918 -222150746 - MIR SINE MIR -65 143 101 222 350 211 0 chr1 60043179 60043302 -222150362 - MIR SINE MIR -75 187 39 250 312 0 40 chr1 60045076 60045201 -222148463 + L2 LINE L2 2830 2949 -323 190 364 45 0 chr1 60045319 60045385 -222148279 + L2 LINE L2 3118 3186 -86 211 284 20 0 chr1 60051246 60051348 -222142316 + (CA)n Simple_repeat Simple_repeat 2 105 0 195 365 94 6 chr1 60053872 60054053 -222139611 - L2 LINE L2 -684 2630 2434 466 175 79 9 chr1 60054124 60054238 -222139426 - MER69A DNA AcHobo -12 165 44 421 237 114 0 chr1 60055389 60055503 -222138161 + MIR SINE MIR 112 238 -24 327 250 107 50 chr1 60055553 60055738 -222137926 - L2 LINE L2 -49 3223 2942 223 329 14 0 chr1 60055917 60055987 -222137677 + L2 LINE L2 3197 3267 -5 807 282 106 7 chr1 60056028 60056453 -222137211 + L1ME4a LINE L1 5655 6121 0 529 282 114 20 chr1 60056473 60056675 -222136989 + MIR SINE MIR 21 241 -21 384 366 83 18 chr1 60057123 60057462 -222136202 + L2 LINE L2 2890 3250 -22 2115 41 63 0 chr1 60057525 60057795 -222135869 + AluY SINE Alu 10 296 -15 2272 94 3 3 chr1 60058054 60058361 -222135303 + AluSx SINE Alu 1 307 -5 1332 192 19 7 chr1 60058470 60058748 -222134916 + L1MD3 LINE L1 7610 7985 -10 575 265 20 14 chr1 60058876 60059023 -222134641 + L2 LINE L2 3166 3313 0 591 219 17 0 chr1 60059136 60059255 -222134409 + L1MD3 LINE L1 7865 7985 -10 575 254 22 14 chr1 60059396 60059534 -222134130 + L2 LINE L2 3175 3313 0 322 281 225 56 chr1 60059546 60059777 -222133887 + L1ME LINE L1 5310 5579 -542 596 274 118 59 chr1 60060090 60060531 -222133133 + MLT1J LTR MaLR 3 469 -42 390 281 187 22 chr1 60061872 60062011 -222131653 - MIR3 SINE MIR -15 193 32 181 297 33 0 chr1 60062412 60062503 -222131161 + L2 LINE L2 1993 2086 -1228 705 288 262 11 chr1 60062642 60063555 -222130109 - L2 LINE L2 -7 3306 2155 255 338 84 19 chr1 60063770 60063924 -222129740 + MLT1H LTR MaLR 108 271 -278 756 268 226 0 chr1 60063924 60064189 -222129475 + MLT1H LTR MaLR 225 549 0 195 368 32 0 chr1 60065027 60065122 -222128542 + L2 LINE L2 2224 2321 -993 471 269 28 14 chr1 60065996 60066137 -222127527 + MIR SINE MIR 10 152 -110 572 154 31 46 chr1 60067276 60067406 -222126258 + MIR SINE MIR 19 146 -62 317 325 127 34 chr1 60067870 60068162 -222125502 + L2 LINE L2 2954 3272 0 227 357 119 8 chr1 60068741 60068985 -222124679 - L2 LINE L2 -185 3087 2817 700 190 83 48 chr1 60070246 60070408 -222123256 - MER33 DNA MER1_type -2285 300 122 2192 107 3 0 chr1 60070408 60070699 -222122965 + AluSq SINE Alu 1 292 -21 700 190 83 48 chr1 60070699 60070825 -222122839 - MER33 DNA MER1_type -2463 122 2 264 346 37 9 chr1 60070841 60070948 -222122716 - MIR SINE MIR -124 138 29 1740 176 0 10 chr1 60071038 60071345 -222122319 - AluJb SINE Alu -8 304 1 434 322 21 7 chr1 60071439 60071582 -222122082 + L3 LINE CR1 1427 1571 -6 330 236 29 71 chr1 60072210 60072350 -222121314 + L2 LINE L2 2922 3055 -217 250 342 196 0 chr1 60072620 60072778 -222120886 + MIR SINE MIR 73 261 -1 204 305 68 34 chr1 60072784 60072902 -222120762 + L2 LINE L2 3109 3230 -42 715 357 57 19 chr1 60073167 60073537 -222120127 + L3 LINE CR1 585 968 -609 476 267 42 42 chr1 60073729 60073894 -222119770 + L3 LINE CR1 1298 1462 -115 518 304 11 37 chr1 60074392 60074583 -222119081 - L3 LINE CR1 -103 1474 1289 296 332 79 36 chr1 60075143 60075396 -222118268 - L2 LINE L2 -31 3241 2978 234 45 68 0 chr1 60075934 60075978 -222117686 + (CA)n Simple_repeat Simple_repeat 2 48 0 198 150 0 0 chr1 60076314 60076354 -222117310 + (CA)n Simple_repeat Simple_repeat 1 40 0 1225 141 0 84 chr1 60078548 60078775 -222114889 - AluJo SINE Alu -18 294 87 1377 255 127 28 chr1 60079194 60079731 -222113933 + MLT1E LTR MaLR 4 593 0 1841 158 0 7 chr1 60079877 60080180 -222113484 + AluJo SINE Alu 1 301 -11 193 276 61 41 chr1 60080426 60080524 -222113140 - L2 LINE L2 -1093 2221 2122 2346 93 0 0 chr1 60080582 60080893 -222112771 + AluSx SINE Alu 2 312 0 431 344 55 18 chr1 60080910 60081073 -222112591 - MIR SINE MIR -31 231 63 286 344 56 8 chr1 60082352 60082477 -222111187 - MER5B DNA MER1_type -26 152 22 288 239 183 0 chr1 60083020 60083091 -222110573 - MIR SINE MIR -155 107 24 277 341 112 18 chr1 60083197 60083367 -222110297 + L2 LINE L2 3087 3272 0 * 1343 297 153 19 chr1 60083365 60084249 -222109415 - L2 LINE L2 0 3313 2205 1889 152 0 3 chr1 60084249 60084545 -222109119 + AluJb SINE Alu 1 295 -17 1343 297 153 19 chr1 60084545 60084934 -222108730 - L2 LINE L2 -1108 2205 1869 340 194 0 0 chr1 60084978 60085040 -222108624 - L2 LINE L2 -212 3060 2999 263 290 97 32 chr1 60085253 60085408 -222108256 - MIR3 SINE MIR -21 187 23 683 247 107 0 chr1 60085522 60085700 -222107964 - MIR SINE MIR -46 216 20 621 247 18 85 chr1 60086227 60086399 -222107265 + MIR SINE MIR 2 156 -106 1685 158 73 3 chr1 60086399 60086715 -222106949 - MER44D DNA MER2_type 0 609 2 621 247 18 85 chr1 60086715 60086782 -222106882 + MIR SINE MIR 156 226 -36 268 161 0 169 chr1 60087350 60087474 -222106190 - MER53 DNA DNA -86 103 1 435 258 8 45 chr1 60087624 60087756 -222105908 - MIR3 SINE MIR -1 207 81 249 58 58 0 chr1 60087840 60087892 -222105772 + (TA)n Simple_repeat Simple_repeat 1 55 0 1914 93 3 24 chr1 60087892 60088181 -222105483 - AluSc SINE Alu -26 283 1 352 141 13 77 chr1 60088224 60088302 -222105362 - L1MCa LINE L1 -4359 2067 1995 256 94 38 0 chr1 60088305 60088358 -222105306 + (TA)n Simple_repeat Simple_repeat 2 56 0 1836 164 0 0 chr1 60088358 60088650 -222105014 - AluJo SINE Alu -14 298 7 2919 258 124 77 chr1 60088658 60088694 -222104970 - HAL1 LINE L1 -21 2486 2453 1995 139 0 0 chr1 60088694 60088989 -222104675 + AluSx SINE Alu 1 295 -17 2919 258 124 77 chr1 60088989 60090223 -222103441 - HAL1 LINE L1 -54 2453 1278 852 148 0 15 chr1 60090223 60090358 -222103306 - FLAM_C SINE Alu 0 133 1 770 132 29 0 chr1 60090362 60090498 -222103166 - L1MA4A LINE L1 -4 6299 6160 2919 258 124 77 chr1 60090498 60091597 -222102067 - HAL1 LINE L1 -1231 1276 1 449 269 168 29 chr1 60092343 60092551 -222101113 - MIR SINE MIR -6 256 20 2002 154 104 45 chr1 60092737 60093177 -222100487 + MER31B LTR ERV1 1 466 0 189 333 80 13 chr1 60093248 60093398 -222100266 + L2 LINE L2 2416 2575 -739 264 279 45 36 chr1 60093847 60093958 -222099706 - MIR SINE MIR -63 145 34 680 217 0 14 chr1 60094549 60094687 -222098977 - MIR SINE MIR -9 253 118 196 277 60 12 chr1 60094779 60094862 -222098802 - MIR SINE MIR -61 147 61 709 189 8 8 chr1 60095077 60095212 -222098452 + MIR SINE MIR 41 174 -58 220 237 150 95 chr1 60095594 60095721 -222097943 + MIR3 SINE MIR 22 155 -53 496 179 0 0 chr1 60095981 60096059 -222097605 - AluJ/FLAM SINE Alu -233 79 2 290 324 54 27 chr1 60096255 60096440 -222097224 - L2 LINE L2 -4 3309 3120 249 224 15 30 chr1 60096567 60096634 -222097030 + MER103 DNA DNA 17 82 -84 518 233 122 50 chr1 60096634 60096814 -222096850 + MIR SINE MIR 41 233 -29 265 280 189 45 chr1 60096982 60097231 -222096433 + L2 LINE L2 2794 3083 -230 994 151 0 47 chr1 60098508 60098541 -222095123 - MER3 DNA MER1_type -38 124 91 1372 207 10 7 chr1 60098541 60098831 -222094833 + AluJb SINE Alu 1 291 -21 994 151 0 47 chr1 60098831 60098969 -222094695 - MER3 DNA MER1_type -71 91 8 221 321 37 28 chr1 60098970 60099079 -222094585 + MIR SINE MIR 31 140 -122 5391 190 13 23 chr1 60099256 60099483 -222094181 - MER45B DNA AcHobo -541 1040 812 2262 95 0 0 chr1 60099483 60099787 -222093877 - AluSx SINE Alu -8 304 1 5391 190 13 23 chr1 60099787 60100607 -222093057 - MER45B DNA AcHobo -769 812 3 808 258 68 24 chr1 60100790 60101019 -222092645 + MIR SINE MIR 4 246 -16 180 0 0 0 chr1 60101019 60101039 -222092625 + (TCTA)n Simple_repeat Simple_repeat 4 23 0 808 258 68 24 chr1 60101039 60101057 -222092607 + MIR SINE MIR 246 262 0 407 239 22 22 chr1 60101056 60101148 -222092516 - L2 LINE L2 -33 3280 3189 * 1518 266 91 55 chr1 60101676 60102758 -222090906 - L1ME3 LINE L1 -305 5857 4816 2199 95 0 16 chr1 60102758 60103063 -222090601 + AluSq SINE Alu 3 302 -11 1518 266 91 55 chr1 60103063 60103394 -222090270 - L1ME3 LINE L1 -1346 4816 4498 2174 116 0 0 chr1 60103394 60103704 -222089960 - AluSg SINE Alu 0 310 1 1518 266 91 55 chr1 60103704 60104135 -222089529 - L1ME3 LINE L1 -1664 4498 3906 1742 145 37 0 chr1 60104135 60104432 -222089232 - AluJb SINE Alu -4 308 1 1518 266 91 55 chr1 60104432 60104567 -222089097 - L1ME3 LINE L1 -2256 3906 3777 1043 109 0 0 chr1 60105191 60105338 -222088326 + AluSg/x SINE Alu 159 305 -4 1733 166 0 10 chr1 60105558 60105854 -222087810 - AluJo SINE Alu -19 293 1 21 0 0 0 chr1 60105911 60105932 -222087732 + AT_rich Low_complexity Low_complexity 1 21 0 205 211 0 0 chr1 60106241 60106279 -222087385 + T-rich Low_complexity Low_complexity 1 38 0 2056 154 34 45 chr1 60106657 60107187 -222086477 + MER52A LTR ERV1 730 1278 0 4284 144 41 4 chr1 60107360 60108047 -222085617 + MER50 LTR ERV1 1 712 -22 504 87 0 0 chr1 60108155 60108224 -222085440 + Alu SINE Alu 2 70 -248 877 87 71 0 chr1 60108224 60108351 -222085313 + MSTA LTR MaLR 292 427 -1 3894 204 34 12 chr1 60108602 60109443 -222084221 - L1MB8 LINE L1 -9 6169 5306 2156 88 0 10 chr1 60109443 60109738 -222083926 + AluSc SINE Alu 1 292 -17 3894 204 34 12 chr1 60109738 60109789 -222083875 - L1MB8 LINE L1 -872 5306 5258 961 174 0 27 chr1 60109803 60109987 -222083677 - FRAM SINE Alu 0 176 1 1959 142 3 0 chr1 60110000 60110310 -222083354 + AluSx SINE Alu 1 311 -1 1381 189 8 76 chr1 60110310 60110621 -222083043 - L1MB8 LINE L1 -894 5252 4970 1314 203 43 14 chr1 60110621 60110897 -222082767 + AluJo SINE Alu 1 284 -28 1381 189 8 76 chr1 60110897 60110967 -222082697 - L1MB8 LINE L1 -1176 4970 4897 2342 171 19 19 chr1 60110969 60111395 -222082269 + MSTB LTR MaLR 1 426 0 422 256 115 59 chr1 60111397 60111667 -222081997 - L1MB8 LINE L1 -3321 2825 2541 2261 67 0 20 chr1 60111677 60111977 -222081687 + AluY SINE Alu 1 294 -17 230 250 0 18 chr1 60112325 60112381 -222081283 - Tigger5 DNA MER2_type -2268 55 1 21 0 0 0 chr1 60112388 60112409 -222081255 + AT_rich Low_complexity Low_complexity 1 21 0 180 243 0 0 chr1 60112460 60112497 -222081167 + L2 LINE L2 3264 3300 -13 2196 111 0 0 chr1 60113241 60113538 -222080126 + AluSg SINE Alu 1 297 -13 1505 243 117 50 chr1 60113550 60113665 -222079999 + L1MC4a LINE L1 5192 5298 -848 2671 82 38 16 chr1 60113665 60114031 -222079633 + THE1C LTR MaLR 1 374 -1 1505 243 117 50 chr1 60114031 60114161 -222079503 + L1MC4a LINE L1 5298 4926 -1220 1631 189 3 3 chr1 60114161 60114462 -222079202 + AluJb SINE Alu 1 301 -11 1505 243 117 50 chr1 60114462 60114976 -222078688 + L1MC4a LINE L1 4925 5403 -743 691 233 0 0 chr1 60115003 60115132 -222078532 - MER5A DNA MER1_type 0 189 61 194 174 22 0 chr1 60115132 60115178 -222078486 + CT-rich Low_complexity Low_complexity 2 48 0 780 190 0 73 chr1 60115180 60115359 -222078305 - FRAM SINE Alu 0 166 1 372 176 29 0 chr1 60115359 60115427 -222078237 - MER5A DNA MER1_type -111 78 9 455 274 127 5 chr1 60115576 60115773 -222077891 + L2 LINE L2 3081 3301 -12 1747 156 40 7 chr1 60115774 60116076 -222077588 + AluSx SINE Alu 1 312 0 376 183 21 11 chr1 60116081 60116174 -222077490 + GA-rich Low_complexity Low_complexity 4 97 0 277 253 53 32 chr1 60116234 60116329 -222077335 - MER5B DNA MER1_type -26 152 56 1770 183 0 0 chr1 60116626 60116921 -222076743 + AluJo SINE Alu 4 298 -14 379 220 184 23 chr1 60117070 60117243 -222076421 + MIR SINE MIR 4 195 -62 476 218 105 8 chr1 60117333 60117466 -222076198 + Charlie8 DNA MER1_type 4 149 -2268 325 285 146 15 chr1 60117628 60117765 -222075899 - MIR SINE MIR -50 212 58 746 251 89 0 chr1 60117766 60117985 -222075679 - MIR SINE MIR 0 262 20 314 274 0 0 chr1 60118111 60118184 -222075480 + L2 LINE L2 3221 3293 -20 686 152 0 0 chr1 60118458 60118563 -222075101 + AluJb SINE Alu 208 312 0 235 258 279 21 chr1 60118727 60118967 -222074697 - L2 LINE L2 -5 3267 2966 2085 126 0 3 chr1 60119328 60119630 -222074034 + AluSp SINE Alu 1 301 -12 1594 192 95 18 chr1 60119771 60119926 -222073738 + L1PB4 LINE L1 5720 5862 -438 3301 204 18 61 chr1 60119926 60120939 -222072725 - LTR5 LTR ERVK 0 969 1 1594 192 95 18 chr1 60120939 60121296 -222072368 + L1PB4 LINE L1 5862 6279 -21 353 167 0 25 chr1 60121299 60121374 -222072290 + Alu SINE Alu 1 55 -248 23 0 0 0 chr1 60121474 60121497 -222072167 + AT_rich Low_complexity Low_complexity 1 23 0 602 235 64 16 chr1 60121746 60121933 -222071731 + L2 LINE L2 3118 3313 0 2223 92 3 0 chr1 60122019 60122312 -222071352 + AluSq SINE Alu 1 294 -19 424 271 89 12 chr1 60122678 60122876 -222070788 - MIR SINE MIR -1 261 4 966 280 16 0 chr1 60123125 60123375 -222070289 + L2 LINE L2 2369 2622 -692 854 251 15 20 chr1 60123377 60123580 -222070084 - MIR SINE MIR 0 262 61 * 1300 254 41 34 chr1 60123574 60123752 -222069912 + L2 LINE L2 2630 2805 -508 1036 226 14 23 chr1 60123752 60123973 -222069691 + MER58A DNA MER1_type 4 222 -2 1300 254 41 34 chr1 60123973 60124469 -222069195 + L2 LINE L2 2805 3312 -1 414 259 80 22 chr1 60124689 60124823 -222068841 - MIR SINE MIR -54 154 12 1659 167 0 0 chr1 60125682 60125958 -222067706 - AluJb SINE Alu -32 280 5 465 310 94 15 chr1 60126123 60126326 -222067338 + MIR SINE MIR 12 230 -32 2227 177 128 17 chr1 60127080 60127548 -222066116 - MLT2B1 LTR ERVL 0 520 1 366 123 0 0 chr1 60127668 60127725 -222065939 + (TCCCC)n Simple_repeat Simple_repeat 4 60 0 499 181 0 15 chr1 60127726 60127859 -222065805 + (CA)n Simple_repeat Simple_repeat 1 131 0 558 294 40 0 chr1 60128138 60128339 -222065325 + LTR33 LTR ERVL 4 212 -309 444 267 20 27 chr1 60128374 60128524 -222065140 + LTR33 LTR ERVL 355 503 -18 1533 84 39 81 chr1 60128731 60128803 -222064861 - THE1C LTR MaLR 0 375 302 2243 95 37 0 chr1 60128803 60129098 -222064566 - AluSx SINE Alu -6 306 1 1533 84 39 81 chr1 60129098 60129310 -222064354 - THE1C LTR MaLR -73 302 103 1729 177 48 50 chr1 60129450 60129846 -222063818 + MLT2D LTR ERVL 1 395 -19 216 322 150 50 chr1 60130235 60130415 -222063249 - L2 LINE L2 -5 3267 3070 482 271 109 45 chr1 60131319 60131540 -222062124 + MIR SINE MIR 13 247 -15 2238 86 0 54 chr1 60132019 60132332 -222061332 + AluY SINE Alu 1 296 -15 445 204 32 0 chr1 60132332 60132425 -222061239 - MER21B LTR ERV1 -749 114 19 322 216 11 45 chr1 60132423 60132511 -222061153 - MER21B LTR ERV1 -757 106 22 * 233 298 107 16 chr1 60132624 60132745 -222060919 + MIR SINE MIR 119 250 -12 220 289 0 53 chr1 60132760 60132836 -222060828 - L2 LINE L2 0 3272 3201 380 221 124 18 chr1 60132919 60133032 -222060632 - MIR3 SINE MIR -41 167 43 383 251 122 23 chr1 60133081 60133398 -222060266 - LTR43 LTR ERV1 -62 478 193 703 260 97 0 chr1 60133934 60134161 -222059503 - L2 LINE L2 -1355 1959 1711 199 236 9 109 chr1 60134218 60134328 -222059336 - L2 LINE L2 -792 2522 2424 6642 100 21 26 chr1 60134613 60135572 -222058092 - LTR13 LTR ERVK 0 954 1 415 256 178 0 chr1 60136446 60136575 -222057089 - MER5A DNA MER1_type -1 188 37 461 316 40 34 chr1 60136608 60136785 -222056879 + MER5B DNA MER1_type 1 178 0 233 289 60 0 chr1 60136832 60136915 -222056749 - L2 LINE L2 0 3313 3226 302 387 8 0 chr1 60137325 60137444 -222056220 - L2 LINE L2 -599 2715 2596 288 296 38 75 chr1 60137535 60137694 -222055970 - MIR SINE MIR -68 194 42 1831 165 10 3 chr1 60137815 60138106 -222055558 + AluSx SINE Alu 1 293 -19 309 315 56 30 chr1 60138898 60139095 -222054569 - MLT1J LTR MaLR -77 434 233 354 308 33 0 chr1 60139388 60139479 -222054185 - MIR SINE MIR -89 173 80 690 117 97 35 chr1 60139590 60139839 -222053825 + MER1B DNA MER1_type 1 339 0 254 382 46 17 chr1 60140124 60140365 -222053299 - L2 LINE L2 -218 3054 2807 2056 119 6 38 chr1 60140730 60141049 -222052615 + AluSx SINE Alu 1 309 -3 225 325 84 87 chr1 60141460 60141795 -222051869 - L2 LINE L2 -44 3269 2936 1274 94 133 0 chr1 60141866 60142069 -222051595 - MER30 DNA MER1_type 0 230 1 306 118 20 0 chr1 60142567 60142618 -222051046 + MER75 DNA T2_type 463 514 0 366 244 13 13 chr1 60142680 60142758 -222050906 - MIR SINE MIR -113 95 18 225 294 79 48 chr1 60143171 60143297 -222050367 + L3 LINE CR1 1428 1557 -20 227 266 0 38 chr1 60145731 60145810 -222047854 - MIR3 SINE MIR -14 194 119 * 331 290 77 71 chr1 60145786 60145955 -222047709 + MIR3 SINE MIR 25 194 -14 2044 130 24 0 chr1 60146112 60146405 -222047259 - AluSx SINE Alu -12 300 1 1022 120 0 0 chr1 60146408 60146541 -222047123 - AluJo/FLAM SINE Alu -179 133 1 21 0 0 0 chr1 60147697 60147718 -222045946 + AT_rich Low_complexity Low_complexity 1 21 0 1703 204 90 21 chr1 60148394 60148826 -222044838 + MLT1C LTR MaLR 6 467 0 604 247 156 35 chr1 60149065 60149296 -222044368 - MIR SINE MIR -2 260 2 197 269 109 0 chr1 60149981 60150100 -222043564 + L2 LINE L2 2827 2958 -314 4230 244 124 31 chr1 60150236 60151854 -222041810 - HAL1 LINE L1 0 2507 1042 1964 136 57 41 chr1 60151854 60152223 -222041441 + THE1C LTR MaLR 1 375 0 10066 121 19 37 chr1 60152225 60153121 -222040543 + THE1C-int LTR MaLR 3 859 -721 2421 87 3 7 chr1 60153121 60153431 -222040233 + AluY SINE Alu 1 309 -2 10066 121 19 37 chr1 60153431 60154141 -222039523 + THE1C-int LTR MaLR 859 1580 0 1862 134 68 44 chr1 60154141 60154507 -222039157 + THE1C LTR MaLR 1 375 0 4230 244 124 31 chr1 60154507 60154676 -222038988 - HAL1 LINE L1 -1465 1042 890 2137 131 0 7 chr1 60154676 60154981 -222038683 - AluSc SINE Alu -6 303 1 4230 244 124 31 chr1 60154981 60155039 -222038625 - HAL1 LINE L1 -1617 890 419 705 241 64 5 chr1 60155083 60155303 -222038361 - HAL1 LINE L1 -2200 307 75 2062 179 81 43 chr1 60156016 60156299 -222037365 + L1MB7 LINE L1 5400 5671 -513 1911 151 20 14 chr1 60156299 60156591 -222037073 + AluJo SINE Alu 1 294 -18 2062 179 81 43 chr1 60156591 60156752 -222036912 + L1MB7 LINE L1 5671 5868 -316 2026 99 0 0 chr1 60156752 60157015 -222036649 + AluSq SINE Alu 39 301 -12 2062 179 81 43 chr1 60157015 60157078 -222036586 + L1MB7 LINE L1 5868 5927 -257 2155 123 16 3 chr1 60158810 60159119 -222034545 - AluSq SINE Alu 0 313 1 1923 163 0 23 chr1 60159119 60159282 -222034382 - AluJo SINE Alu -18 294 140 2315 119 0 0 chr1 60159282 60159584 -222034080 - AluSg SINE Alu -8 302 1 1923 163 0 23 chr1 60159584 60159721 -222033943 - AluJo SINE Alu -172 140 1 363 308 143 15 chr1 60159938 60160071 -222033593 - MIR3 SINE MIR -13 195 46 225 253 92 23 chr1 60160375 60160462 -222033202 + L3 LINE CR1 1475 1567 -10 2387 100 17 0 chr1 60160868 60161169 -222032495 + AluSx SINE Alu 1 306 -6 554 256 29 139 chr1 60162058 60162279 -222031385 + MIR SINE MIR 13 198 -64 2184 121 7 0 chr1 60162279 60162584 -222031080 + AluSx SINE Alu 1 307 -5 554 256 29 139 chr1 60162584 60162643 -222031021 + MIR SINE MIR 198 262 0 1995 173 52 0 chr1 60162748 60163117 -222030547 + MER82 DNA MER2_type 8 395 -258 220 267 57 76 chr1 60163537 60163642 -222030022 + MIR SINE MIR 80 182 -80 497 249 146 24 chr1 60163668 60163833 -222029831 + MIR SINE MIR 22 206 -56 279 296 230 25 chr1 60164267 60164463 -222029201 + MIR SINE MIR 1 236 -26 1832 99 60 0 chr1 60166424 60166707 -222026957 + L1MA5A LINE L1 5998 6297 0 22 0 0 0 chr1 60167457 60167479 -222026185 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 60167887 60167915 -222025749 + GC_rich Low_complexity Low_complexity 1 28 0 11767 150 28 34 chr1 60168571 60168745 -222024919 + L1M1 LINE L1 16 190 -7375 2222 146 0 0 chr1 60168745 60169053 -222024611 + AluSx SINE Alu 1 308 -4 11767 150 28 34 chr1 60169053 60171742 -222021922 + L1M1 LINE L1 190 3222 -4343 1930 143 31 3 chr1 60171743 60172037 -222021627 + AluJb SINE Alu 1 302 -10 315 71 0 0 chr1 60172054 60172096 -222021568 + (CAGA)n Simple_repeat Simple_repeat 2 43 0 337 172 17 0 chr1 60172096 60172154 -222021510 + AluJ/FLAM SINE Alu 2 60 -242 2339 96 0 7 chr1 60172438 60172740 -222020924 + AluSg SINE Alu 1 300 -10 1766 73 0 9 chr1 60173486 60173706 -222019958 - AluY SINE Alu -11 300 83 1063 91 8 0 chr1 60173709 60173841 -222019823 - AluSq/x SINE Alu -180 133 2 1772 182 0 0 chr1 60173925 60174232 -222019432 + AluJb SINE Alu 1 307 -5 331 289 16 33 chr1 60174351 60174472 -222019192 - L2 LINE L2 -9 3304 3186 1260 195 9 74 chr1 60174704 60175027 -222018637 - AluJo SINE Alu -10 302 1 226 227 57 23 chr1 60175088 60175176 -222018488 - L1ME LINE L1 -286 5880 5790 581 264 180 20 chr1 60175403 60176344 -222017320 - L1ME LINE L1 -704 5462 4328 702 296 133 48 chr1 60176570 60177111 -222016553 - L2 LINE L2 -4 3309 2688 2125 110 0 0 chr1 60177111 60177410 -222016254 + AluSx SINE Alu 5 303 -9 702 296 133 48 chr1 60177410 60177484 -222016180 - L2 LINE L2 -625 2688 2622 1404 190 23 99 chr1 60178247 60178642 -222015022 + MLT1A1 LTR MaLR 1 365 0 2346 76 0 3 chr1 60178659 60178962 -222014702 - AluY SINE Alu -9 302 1 317 329 59 47 chr1 60179191 60179361 -222014303 + MIR SINE MIR 21 192 -70 530 261 31 51 chr1 60179458 60179653 -222014011 - MIR SINE MIR -27 235 45 543 316 83 53 chr1 60180522 60181043 -222012621 + L2 LINE L2 2612 3150 -122 297 265 102 86 chr1 60181094 60181238 -222012426 + L2 LINE L2 2457 2608 -706 2228 90 7 0 chr1 60181238 60181537 -222012127 - AluSx SINE Alu -11 301 1 297 265 102 86 chr1 60181537 60181637 -222012027 + L2 LINE L2 2608 2705 -609 402 296 91 94 chr1 60181873 60182487 -222011177 + L1MEd LINE L1 700 1296 -1194 2414 83 3 0 chr1 60182566 60182878 -222010786 - AluSp SINE Alu 0 313 1 2007 120 7 0 chr1 60182880 60183180 -222010484 - AluSq SINE Alu -11 302 1 257 336 28 9 chr1 60183402 60183509 -222010155 + MIR3 SINE MIR 4 112 -96 427 168 181 19 chr1 60183861 60183896 -222009768 - L1MC5 LINE L1 -330 7631 7603 1626 145 64 0 chr1 60183896 60184179 -222009485 - AluSg SINE Alu -9 301 1 427 168 181 19 chr1 60184179 60184298 -222009366 - L1MC5 LINE L1 -358 7603 7452 2318 46 7 0 chr1 60184407 60184692 -222008972 + AluSq SINE Alu 17 303 -10 1025 294 104 15 chr1 60184704 60185199 -222008465 + L2 LINE L2 2776 3312 -1 624 219 125 12 chr1 60186212 60186372 -222007292 + MER5B DNA MER1_type 1 178 0 644 81 11 0 chr1 60186638 60186725 -222006939 - AluSp/q SINE Alu -18 295 208 368 169 0 0 chr1 60186725 60186784 -222006880 - AluJo SINE Alu -166 136 78 1660 64 0 36 chr1 60186784 60187004 -222006660 - AluSx SINE Alu -100 212 1 300 290 45 0 chr1 60187103 60187225 -222006439 + MIR SINE MIR 57 183 -63 1989 146 10 0 chr1 60187325 60187634 -222006030 + AluJb SINE Alu 1 312 0 199 280 65 21 chr1 60187643 60187736 -222005928 - MIR SINE MIR -16 246 150 285 304 90 90 chr1 60187962 60188498 -222005166 - L2 LINE L2 -7 3265 2610 1113 145 0 0 chr1 60188499 60188671 -222004993 + FRAM SINE Alu 1 168 -8 648 258 78 9 chr1 60188729 60188946 -222004718 - L2 LINE L2 -1228 2086 1855 459 303 27 43 chr1 60188998 60189186 -222004478 - L2 LINE L2 -188 3084 2900 382 203 203 54 chr1 60189168 60189316 -222004348 + MIR SINE MIR 78 247 -15 * 207 0 0 0 chr1 60189838 60189861 -222003803 + (TA)n Simple_repeat Simple_repeat 2 24 0 341 329 187 47 chr1 60190614 60190994 -222002670 + L2 LINE L2 2836 3268 -4 186 182 23 23 chr1 60191333 60191377 -222002287 + MIR3 SINE MIR 163 206 -2 225 132 0 0 chr1 60193389 60193427 -222000237 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 279 0 0 chr1 60193897 60193958 -221999706 + (CA)n Simple_repeat Simple_repeat 1 61 0 482 325 48 24 chr1 60194265 60194474 -221999190 + L2 LINE L2 2868 3081 -191 407 323 121 30 chr1 60194490 60194722 -221998942 - L2 LINE L2 -3 3269 3017 245 356 156 0 chr1 60194749 60194884 -221998780 + L2 LINE L2 3117 3272 0 328 256 0 13 chr1 60195035 60195113 -221998551 + L2 LINE L2 3236 3312 -1 646 163 11 22 chr1 60195121 60195299 -221998365 + GA-rich Low_complexity Low_complexity 1 176 0 485 303 168 26 chr1 60195604 60195908 -221997756 + L2 LINE L2 2926 3272 0 442 307 43 7 chr1 60196123 60196263 -221997401 + L3 LINE CR1 1370 1514 -63 449 249 102 80 chr1 60196326 60196396 -221997268 + L1M4 LINE L1 4117 4184 -1962 2070 125 7 0 chr1 60196396 60196701 -221996963 + AluJb SINE Alu 3 309 -3 449 249 102 80 chr1 60196701 60196880 -221996784 + L1M4 LINE L1 4184 4358 -1788 1793 146 3 32 chr1 60196880 60197196 -221996468 + AluJo SINE Alu 1 307 -5 449 249 102 80 chr1 60197196 60197444 -221996220 + L1M4 LINE L1 4358 4626 -1520 517 311 66 23 chr1 60197521 60198139 -221995525 + L1M4 LINE L1 4759 5403 -743 220 269 103 13 chr1 60199945 60200023 -221993641 + L2 LINE L2 2999 3083 -189 193 312 110 7 chr1 60200523 60200677 -221992987 - L2 LINE L2 -1158 2156 1987 2278 143 11 82 chr1 60201016 60201492 -221992172 - L1PB3 LINE L1 0 6154 5713 1760 178 3 0 chr1 60201510 60201813 -221991851 - AluJo SINE Alu -8 304 1 338 314 86 14 chr1 60201821 60201961 -221991703 - MIR SINE MIR -11 251 102 895 138 12 19 chr1 60201984 60202144 -221991520 - FRAM SINE Alu -16 160 2 384 257 222 21 chr1 60202486 60202630 -221991034 + MIR SINE MIR 2 174 -88 201 284 27 0 chr1 60203638 60203712 -221989952 + (CATATA)n Simple_repeat Simple_repeat 4 79 0 205 311 68 0 chr1 60203979 60204053 -221989611 + L2 LINE L2 3145 3223 -49 180 350 0 0 chr1 60204149 60204209 -221989455 - L2 LINE L2 -20 3252 3193 551 211 160 23 chr1 60205335 60205510 -221988154 + LTR33 LTR ERVL 316 514 -7 752 288 86 29 chr1 60205945 60206223 -221987441 + L3 LINE CR1 1282 1575 -2 208 257 97 62 chr1 60206984 60207097 -221986567 - L2 LINE L2 -235 3037 2921 290 354 119 12 chr1 60207168 60207411 -221986253 - L2 LINE L2 -493 2821 2553 291 269 113 113 chr1 60207478 60207842 -221985822 + L2 LINE L2 2152 2515 -799 1819 147 13 20 chr1 60209448 60209748 -221983916 + AluJb SINE Alu 1 298 -14 187 266 64 83 chr1 60209771 60209880 -221983784 - L2 LINE L2 -455 2859 2753 191 214 24 0 chr1 60210410 60210452 -221983212 + MIR SINE MIR 44 86 -122 2279 243 87 52 chr1 60210868 60211567 -221982097 + L2 LINE L2 2267 3013 -300 1659 179 10 7 chr1 60211567 60211874 -221981790 - AluJo SINE Alu 0 312 5 2279 243 87 52 chr1 60211874 60212186 -221981478 + L2 LINE L2 3013 3313 0 3044 170 47 19 chr1 60212413 60212983 -221980681 + LTR60 LTR ERV1 1 586 0 223 317 30 0 chr1 60213786 60213887 -221979777 - MIR SINE MIR -88 120 17 298 256 179 30 chr1 60213975 60214143 -221979521 - L3 LINE CR1 -14 1563 1371 216 346 56 0 chr1 60214217 60214324 -221979340 - L3 LINE CR1 -425 1152 1040 316 284 10 29 chr1 60214330 60214432 -221979232 - L3 LINE CR1 -638 939 840 620 259 12 6 chr1 60218136 60218306 -221975358 - MIR3 SINE MIR -31 177 7 442 311 50 29 chr1 60218701 60218978 -221974686 + THE1-int LTR MaLR 537 819 -761 1912 76 66 46 chr1 60219715 60220018 -221973646 - AluSg SINE Alu -1 309 1 315 261 63 27 chr1 60220739 60220850 -221972814 + L2 LINE L2 3132 3246 -26 471 281 114 18 chr1 60221212 60221379 -221972285 + MIR SINE MIR 10 192 -70 243 233 33 0 chr1 60222029 60222089 -221971575 + MIR SINE MIR 65 126 -136 181 304 203 0 chr1 60222496 60222565 -221971099 - MIR SINE MIR -31 231 149 791 234 141 22 chr1 60222577 60222804 -221970860 + MIR SINE MIR 8 261 -1 182 328 66 0 chr1 60222835 60222896 -221970768 - L2 LINE L2 -1 3271 3207 244 208 179 47 chr1 60223410 60223516 -221970148 + MIR3 SINE MIR 4 123 -85 396 283 28 62 chr1 60223584 60223729 -221969935 + MER5A DNA MER1_type 50 189 0 1585 195 23 0 chr1 60223995 60224297 -221969367 + MLT1A1 LTR MaLR 1 309 -56 277 149 36 138 chr1 60224454 60224649 -221969015 + (CTTA)n Simple_repeat Simple_repeat 3 177 0 263 154 36 138 chr1 60224786 60224981 -221968683 + (CTTA)n Simple_repeat Simple_repeat 3 177 0 266 279 35 32 chr1 60225019 60225367 -221968297 + (CCTA)n Simple_repeat Simple_repeat 1 349 0 269 271 34 34 chr1 60225383 60225560 -221968104 + (CCTA)n Simple_repeat Simple_repeat 4 180 0 455 222 0 0 chr1 60225688 60225778 -221967886 - MIR SINE MIR -117 145 56 365 302 74 13 chr1 60226131 60226280 -221967384 - MIR3 SINE MIR -7 201 44 421 314 45 19 chr1 60226421 60226577 -221967087 - MIR SINE MIR -90 172 13 540 311 90 20 chr1 60226734 60226978 -221966686 + MIR SINE MIR 2 262 0 217 305 117 31 chr1 60227626 60227754 -221965910 + MIR3 SINE MIR 67 205 -3 511 237 51 0 chr1 60228227 60228345 -221965319 - MIR SINE MIR -58 204 81 249 273 0 45 chr1 60228965 60229053 -221964611 + MIR SINE MIR 64 147 -61 319 294 76 8 chr1 60229531 60229650 -221964014 + MIR SINE MIR 62 188 -74 180 111 0 0 chr1 60229864 60229891 -221963773 + (TC)n Simple_repeat Simple_repeat 2 28 0 575 312 0 0 chr1 60230388 60230529 -221963135 + MIR SINE MIR 78 218 -44 202 299 15 0 chr1 60231270 60231337 -221962327 + L2 LINE L2 2993 3060 -212 198 0 0 0 chr1 60231624 60231646 -221962018 + (TCC)n Simple_repeat Simple_repeat 3 24 0 387 314 81 23 chr1 60231648 60231820 -221961844 + MIR SINE MIR 81 262 0 211 305 95 11 chr1 60231869 60231964 -221961700 - MIR SINE MIR -89 119 17 422 275 38 44 chr1 60232353 60232513 -221961151 + MIR3 SINE MIR 14 172 -36 1146 206 32 5 chr1 60232976 60233194 -221960470 - MER58A DNA MER1_type 0 224 1 385 236 179 7 chr1 60233617 60233757 -221959907 - MIR3 SINE MIR -22 186 23 447 304 158 0 chr1 60233979 60234163 -221959501 - MIR SINE MIR -8 254 42 357 296 46 0 chr1 60234729 60234837 -221958827 - MIR SINE MIR -39 223 111 407 287 108 48 chr1 60235720 60235887 -221957777 + MIR SINE MIR 20 196 -66 274 360 13 27 chr1 60235946 60236096 -221957568 + MIR3 SINE MIR 58 205 -3 344 280 64 1 chr1 60236343 60236475 -221957189 - MIR SINE MIR -61 147 7 315 224 130 62 chr1 60236472 60236633 -221957031 - L2 LINE L2 -187 3085 2914 * 531 235 59 0 chr1 60236970 60237123 -221956541 - MER103 DNA DNA -4 162 1 256 288 25 0 chr1 60237205 60237285 -221956379 - MIR SINE MIR -56 152 71 244 190 114 25 chr1 60240251 60240330 -221953334 + MIR SINE MIR 54 139 -69 273 313 10 10 chr1 60241124 60241223 -221952441 + MIR3 SINE MIR 81 179 -29 257 325 33 8 chr1 60242154 60242274 -221951390 + MIR3 SINE MIR 34 156 -52 204 274 81 89 chr1 60242722 60242771 -221950893 - MIR SINE MIR -60 148 100 1914 135 0 30 chr1 60242771 60243075 -221950589 + AluJb SINE Alu 1 295 -17 204 274 81 89 chr1 60243075 60243149 -221950515 - MIR SINE MIR -108 100 26 283 275 14 0 chr1 60243290 60243359 -221950305 + MIR3 SINE MIR 101 170 -38 265 290 14 0 chr1 60243749 60243818 -221949846 - MIR3 SINE MIR -38 170 101 236 217 145 14 chr1 60243957 60244026 -221949638 + MIR SINE MIR 26 103 -105 1067 137 31 93 chr1 60244031 60244257 -221949407 - AluJb SINE Alu -13 299 88 391 232 143 0 chr1 60244304 60244416 -221949248 + MIR SINE MIR 76 203 -59 286 278 56 0 chr1 60245095 60245185 -221948479 - L3 LINE CR1 -51 1526 1432 452 340 76 5 chr1 60246522 60246707 -221946957 + MIR SINE MIR 50 247 -15 544 259 46 17 chr1 60247784 60247962 -221945702 + MIR3 SINE MIR 1 185 -23 190 274 20 0 chr1 60248227 60248278 -221945386 - MIR SINE MIR -50 212 161 215 350 71 7 chr1 60249355 60249495 -221944169 - L3 LINE CR1 -70 1507 1359 188 241 36 48 chr1 60249521 60249604 -221944060 - L2 LINE L2 -12 3260 3179 471 295 47 42 chr1 60250170 60250338 -221943326 + MIR SINE MIR 15 186 -76 2213 108 0 0 chr1 60250338 60250633 -221943031 + AluSx SINE Alu 1 295 -17 471 295 47 42 chr1 60250633 60250657 -221943007 + MIR SINE MIR 186 208 -54 353 284 9 37 chr1 60250720 60250829 -221942835 - MIR SINE MIR -65 197 92 279 252 217 9 chr1 60251714 60251829 -221941835 + MIR SINE MIR 64 202 -60 201 329 153 45 chr1 60251906 60252128 -221941536 + L3 LINE CR1 1221 1466 -111 344 209 0 0 chr1 60252133 60252200 -221941464 - L2 LINE L2 0 3272 3206 218 263 0 26 chr1 60252941 60253017 -221940647 + CT-rich Low_complexity Low_complexity 4 77 0 196 223 214 19 chr1 60253500 60253603 -221940061 - MIR3 SINE MIR -73 135 13 1652 173 25 4 chr1 60253708 60253986 -221939678 - AluJo SINE Alu -28 284 1 234 269 0 0 chr1 60254550 60254602 -221939062 + L2 LINE L2 3205 3256 -16 193 349 140 34 chr1 60254774 60255009 -221938655 - L2 LINE L2 -89 3183 2924 343 339 62 41 chr1 60255845 60256087 -221937577 + L3 LINE CR1 1275 1521 -56 568 305 99 14 chr1 60256713 60256926 -221936738 - MIR SINE MIR -17 245 15 265 333 56 16 chr1 60257445 60257571 -221936093 - MIR SINE MIR -95 167 37 326 270 9 45 chr1 60258874 60258985 -221934679 - L3b LINE CR1 -187 1396 1290 304 235 0 37 chr1 60259483 60259564 -221934100 - MIR SINE MIR -78 130 53 416 345 8 17 chr1 60259899 60260134 -221933530 + L1ME4a LINE L1 5621 5853 -268 412 140 0 0 chr1 60260285 60260342 -221933322 - AluSg/x SINE Alu -49 260 204 278 229 78 0 chr1 60260429 60260531 -221933133 + MIR SINE MIR 38 153 -74 366 271 107 8 chr1 60261350 60261472 -221932192 + MIR SINE MIR 27 143 -65 579 291 63 18 chr1 60262267 60262490 -221931174 + MIR SINE MIR 20 252 -10 361 324 75 20 chr1 60263730 60264051 -221929613 - L2 LINE L2 -212 3060 2724 251 339 101 65 chr1 60264608 60264776 -221928888 + MIR SINE MIR 79 252 -10 401 285 47 0 chr1 60265103 60265221 -221928443 + MIR SINE MIR 29 145 -63 254 259 99 0 chr1 60265267 60265348 -221928316 + L2 LINE L2 3002 3090 -182 282 287 105 21 chr1 60266238 60266381 -221927283 + MIR3 SINE MIR 13 167 -41 419 356 64 16 chr1 60266587 60266837 -221926827 + MIR SINE MIR 1 262 0 24 67 0 0 chr1 60267663 60267708 -221925956 + GC_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 60269000 60269022 -221924642 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 60269286 60269307 -221924357 + GC_rich Low_complexity Low_complexity 1 21 0 214 258 10 93 chr1 60269396 60269493 -221924171 - MER91A DNA MER1_type -40 156 68 390 235 78 20 chr1 60269827 60269980 -221923684 - L2 LINE L2 0 3272 3111 684 282 123 16 chr1 60269989 60270298 -221923366 - L2 LINE L2 -29 3284 2943 266 311 78 10 chr1 60270515 60270618 -221923046 + MIR3 SINE MIR 82 191 -17 195 42 0 0 chr1 60270651 60270675 -221922989 + (GAAAA)n Simple_repeat Simple_repeat 4 27 0 2528 74 3 0 chr1 60270675 60270985 -221922679 + AluY SINE Alu 1 311 0 309 51 0 0 chr1 60270987 60271026 -221922638 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 583 261 124 14 chr1 60271036 60271254 -221922410 + MIR SINE MIR 21 262 0 730 256 103 0 chr1 60271782 60271977 -221921687 - MIR SINE MIR 0 262 48 240 330 90 30 chr1 60272388 60272655 -221921009 + L2 LINE L2 2931 3213 -59 201 302 122 0 chr1 60272708 60272847 -221920817 - L2 LINE L2 -30 3242 3087 237 71 54 54 chr1 60272978 60273034 -221920630 + (CACTT)n Simple_repeat Simple_repeat 3 58 0 218 176 39 0 chr1 60273090 60273141 -221920523 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 370 220 141 78 chr1 60273203 60273324 -221920340 + MIR SINE MIR 34 146 -116 2401 199 30 17 chr1 60273324 60273857 -221919807 - MLT1F LTR MaLR -2 540 1 370 220 141 78 chr1 60273857 60273890 -221919774 + MIR SINE MIR 146 175 -87 2083 133 21 3 chr1 60273890 60274227 -221919437 + MER2 DNA MER2_type 1 343 -1 370 220 141 78 chr1 60274227 60274262 -221919402 + MIR SINE MIR 175 236 -26 1670 148 0 87 chr1 60275083 60275115 -221918549 - AluJb SINE Alu -2 310 277 255 61 0 0 chr1 60275115 60275148 -221918516 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 1670 148 0 87 chr1 60275148 60275447 -221918217 - AluJb SINE Alu -35 277 8 3966 159 10 33 chr1 60275447 60276383 -221917281 - L1MB3 LINE L1 -172 6011 5096 1442 196 94 188 chr1 60276426 60276614 -221917050 - HAL1 LINE L1 -403 2104 1900 3998 153 47 10 chr1 60276614 60277321 -221916343 + MER44D DNA MER2_type 1 605 0 1442 196 94 188 chr1 60277321 60277559 -221916105 - HAL1 LINE L1 -607 1900 1641 2233 131 0 0 chr1 60277559 60277865 -221915799 - AluSx SINE Alu -6 306 1 1442 196 94 188 chr1 60277865 60278123 -221915541 - HAL1 LINE L1 -866 1641 1360 870 191 7 0 chr1 60278123 60278275 -221915389 - FRAM SINE Alu -21 155 3 1442 196 94 188 chr1 60278275 60278771 -221914893 - HAL1 LINE L1 -1147 1360 896 769 283 58 11 chr1 60278770 60279451 -221914213 + L1ME3A LINE L1 5195 5962 -208 * 371 328 8 8 chr1 60279643 60279774 -221913890 - MER94 DNA DNA -3 131 1 197 0 0 67 chr1 60279837 60279867 -221913797 + (TTTTTG)n Simple_repeat Simple_repeat 5 32 0 1781 172 6 32 chr1 60279871 60280185 -221913479 - AluSx SINE Alu -6 306 1 194 251 156 39 chr1 60280605 60280836 -221912828 - L2 LINE L2 -188 3084 2827 603 207 191 21 chr1 60281320 60281508 -221912156 + MIR SINE MIR 42 261 -1 216 0 0 0 chr1 60281741 60281765 -221911899 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2392 89 52 3 chr1 60281790 60282137 -221911527 + THE1B LTR MaLR 1 364 0 181 238 0 0 chr1 60282400 60282442 -221911222 + MIR SINE MIR 81 122 -86 270 0 0 0 chr1 60283144 60283174 -221910490 + (TG)n Simple_repeat Simple_repeat 2 31 0 671 229 13 91 chr1 60284066 60284297 -221909367 + MIR SINE MIR 12 224 -38 438 289 149 35 chr1 60284398 60284599 -221909065 + MIR SINE MIR 18 241 -21 267 261 62 39 chr1 60284615 60284745 -221908919 - MIR SINE MIR -73 135 3 387 289 0 0 chr1 60285126 60285223 -221908441 - MIR SINE MIR -3 259 163 710 212 8 0 chr1 60285383 60285515 -221908149 - FLAM_A SINE Alu 0 133 1 468 207 0 113 chr1 60285769 60285919 -221907745 - Charlie8 DNA MER1_type -2203 214 82 1595 171 91 0 chr1 60285931 60286217 -221907447 + AluJo SINE Alu 1 312 0 211 240 0 0 chr1 60286425 60286475 -221907189 + L2 LINE L2 2910 2959 -313 547 294 65 20 chr1 60286489 60286734 -221906930 - L2 LINE L2 -16 3297 3042 191 225 275 38 chr1 60287565 60287645 -221906019 - MIR3 SINE MIR -52 156 58 528 311 88 32 chr1 60288261 60288637 -221905027 - L1MC4a LINE L1 -1927 5881 5485 2438 84 0 0 chr1 60288710 60289008 -221904656 + AluSc SINE Alu 5 302 -7 249 275 38 0 chr1 60289010 60289090 -221904574 + MLT1F1 LTR MaLR 56 138 -429 2275 184 76 35 chr1 60289090 60289629 -221904035 + L1MC3 LINE L1 7213 7773 -12 938 244 154 42 chr1 60290020 60290213 -221903451 - MLT1D LTR MaLR 0 505 335 2473 91 0 3 chr1 60290213 60290522 -221903142 - AluSc SINE Alu -1 308 1 938 244 154 42 chr1 60290522 60290591 -221903073 - MLT1D LTR MaLR -170 335 275 1733 146 3 87 chr1 60290591 60290914 -221902750 - AluJb SINE Alu -16 296 1 938 244 154 42 chr1 60290914 60291104 -221902560 - MLT1D LTR MaLR -230 275 1 570 322 106 0 chr1 60291309 60291554 -221902110 - LTR16A LTR ERVL 0 450 180 455 296 25 6 chr1 60291645 60291804 -221901860 - MIR SINE MIR -83 179 18 264 284 23 23 chr1 60292323 60292411 -221901253 + MIR SINE MIR 64 151 -111 209 175 0 0 chr1 60292412 60292452 -221901212 + L2 LINE L2 3217 3256 -16 512 333 81 0 chr1 60293198 60293396 -221900268 + MIR SINE MIR 49 262 0 1421 154 0 9 chr1 60293697 60293911 -221899753 + AluJo SINE Alu 1 212 -100 186 338 66 29 chr1 60295036 60295172 -221898492 - L2 LINE L2 -40 3273 3133 228 233 17 0 chr1 60295450 60295510 -221898154 + (TGAG)n Simple_repeat Simple_repeat 1 61 0 285 281 96 54 chr1 60296300 60296467 -221897197 + MIR SINE MIR 89 262 0 251 286 0 0 chr1 60296419 60296475 -221897189 - MIR SINE MIR 0 262 207 * 508 313 47 13 chr1 60297220 60297453 -221896211 + L1ME4a LINE L1 5630 5870 -251 519 115 0 0 chr1 60297454 60297532 -221896132 - AluJb SINE Alu -12 300 223 1275 154 14 18 chr1 60297633 60297853 -221895811 - AluJb SINE Alu -93 219 1 363 318 30 18 chr1 60297921 60298103 -221895561 + MIR SINE MIR 76 261 -1 2297 112 0 0 chr1 60298291 60298586 -221895078 - AluSx SINE Alu -17 295 1 670 279 30 41 chr1 60298586 60298855 -221894809 - L2 LINE L2 -6 3307 3042 408 256 156 37 chr1 60299018 60299346 -221894318 - L2 LINE L2 -581 2733 2367 326 276 26 58 chr1 60300089 60300245 -221893419 + MIR SINE MIR 36 186 -76 2306 114 3 3 chr1 60300710 60301018 -221892646 + AluSx SINE Alu 1 308 -4 183 80 0 0 chr1 60301564 60301589 -221892075 + (CCCA)n Simple_repeat Simple_repeat 2 26 0 489 350 63 13 chr1 60301705 60301942 -221891722 - MIR SINE MIR -1 261 13 376 315 37 6 chr1 60302706 60302868 -221890796 + MER117 DNA MER1_type 30 196 -1 229 289 36 12 chr1 60303082 60303165 -221890499 + L2 LINE L2 3188 3272 0 180 179 0 0 chr1 60303187 60303226 -221890438 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 339 300 25 68 chr1 60303530 60303810 -221889854 - L1ME4a LINE L1 -3 6118 5851 193 274 20 0 chr1 60303820 60303871 -221889793 - MIR SINE MIR -64 144 93 635 148 0 8 chr1 60303909 60304031 -221889633 + (TTCC)n Simple_repeat Simple_repeat 2 122 0 1453 181 29 0 chr1 60304107 60304345 -221889319 - AluJb SINE Alu -7 305 61 408 195 61 76 chr1 60304610 60304758 -221888906 + MLT1I LTR MaLR 252 547 -2 377 228 181 0 chr1 60304776 60304903 -221888761 + MIR SINE MIR 97 246 -16 396 282 104 6 chr1 60304935 60305098 -221888566 - MER112 DNA MER1_type -9 251 73 210 149 85 0 chr1 60305259 60305306 -221888358 - L2 LINE L2 -2 3311 3261 468 284 216 19 chr1 60305536 60305744 -221887920 + MIR SINE MIR 13 261 -1 500 264 36 0 chr1 60305832 60305972 -221887692 + MER117 DNA MER1_type 53 197 0 287 230 27 0 chr1 60305972 60306046 -221887618 - MIR3 SINE MIR -48 160 85 2309 120 0 0 chr1 60306968 60307276 -221886388 + AluSx SINE Alu 1 308 -4 515 265 44 0 chr1 60307380 60307516 -221886148 + MIR SINE MIR 3 144 -118 944 274 48 28 chr1 60307714 60308068 -221885596 - L1ME4a LINE L1 -2185 5623 5263 180 0 0 0 chr1 60308155 60308175 -221885489 + (T)n Simple_repeat Simple_repeat 1 20 0 2605 214 79 83 chr1 60308486 60309406 -221884258 - L1ME2 LINE L1 -1 6163 5241 189 74 0 0 chr1 60309406 60309433 -221884231 + (CA)n Simple_repeat Simple_repeat 1 27 0 2605 214 79 83 chr1 60309433 60309516 -221884148 - L1ME2 LINE L1 -923 5241 5159 1506 168 38 15 chr1 60309516 60309778 -221883886 - AluJo SINE Alu -9 303 36 2605 214 79 83 chr1 60309778 60310414 -221883250 - L1ME2 LINE L1 -1005 5159 4532 3409 209 64 52 chr1 60310425 60310687 -221882977 - L1ME2 LINE L1 -1686 4460 4203 1503 161 89 34 chr1 60310687 60310859 -221882805 - AluJb SINE Alu -4 308 112 348 24 0 0 chr1 60310859 60310900 -221882764 + (TG)n Simple_repeat Simple_repeat 2 42 0 1503 161 89 34 chr1 60310900 60311019 -221882645 - AluJb SINE Alu -200 112 1 3409 209 64 52 chr1 60311019 60311892 -221881772 - L1ME2 LINE L1 -1943 4203 3311 820 277 61 17 chr1 60311933 60312164 -221881500 + MLT1J1 LTR MaLR 37 277 -169 195 162 0 0 chr1 60312204 60312241 -221881423 + GA-rich Low_complexity Low_complexity 2 38 0 615 288 80 75 chr1 60312343 60313075 -221880589 - L1ME4a LINE L1 -1542 4604 3864 225 0 0 0 chr1 60313075 60313100 -221880564 + (TAATG)n Simple_repeat Simple_repeat 3 27 0 615 288 80 75 chr1 60313100 60313432 -221880232 - L1ME4a LINE L1 -2282 3864 3535 387 227 36 18 chr1 60313451 60313561 -221880103 - L1MC5 LINE L1 -774 7187 7076 717 196 98 75 chr1 60313693 60313959 -221879705 + L1MC5 LINE L1 7072 7343 -618 215 286 48 0 chr1 60314037 60314100 -221879564 - MIR3 SINE MIR -50 158 93 * 261 293 40 30 chr1 60314093 60314192 -221879472 + MIR SINE MIR 67 166 -96 208 275 22 88 chr1 60314273 60314364 -221879300 + MIR SINE MIR 61 145 -63 181 302 206 8 chr1 60314952 60315078 -221878586 + L2 LINE L2 3029 3179 -93 259 175 88 0 chr1 60315150 60315207 -221878457 + MIR SINE MIR 89 150 -112 8320 50 7 9 chr1 60315457 60316466 -221877198 - LTR13 LTR ERVK 0 1007 1 738 222 78 0 chr1 60316900 60317053 -221876611 + MER45A DNA AcHobo 4 168 -10 486 0 0 0 chr1 60317618 60317672 -221875992 + (CA)n Simple_repeat Simple_repeat 2 55 0 584 179 71 0 chr1 60317757 60317897 -221875767 - MER113 DNA MER1_type? -274 247 98 249 212 15 0 chr1 60317897 60317963 -221875701 + L1MC3 LINE L1 7718 7784 -1 702 226 137 17 chr1 60318240 60318532 -221875132 - LTR33 LTR ERVL -114 407 81 184 275 42 78 chr1 60318578 60318720 -221874944 + MIR3 SINE MIR 1 137 -71 258 274 59 29 chr1 60319054 60319156 -221874508 - MIR3 SINE MIR -46 162 58 310 289 70 9 chr1 60319584 60319698 -221873966 + MIR SINE MIR 47 167 -95 216 0 0 0 chr1 60319744 60319768 -221873896 + (TC)n Simple_repeat Simple_repeat 1 24 0 198 289 0 0 chr1 60319784 60319836 -221873828 + L2 LINE L2 2862 2913 -359 1183 244 14 41 chr1 60319993 60320357 -221873307 + MLT1H LTR MaLR 1 354 -195 479 239 9 9 chr1 60320359 60320472 -221873192 + MER81 DNA DNA 2 114 0 414 265 39 0 chr1 60320641 60320743 -221872921 + MER91C DNA MER1_type 1 106 -34 265 242 0 30 chr1 60320762 60320828 -221872836 + L2 LINE L2 3004 3067 -246 237 266 177 13 chr1 60320861 60320940 -221872724 + MIR SINE MIR 20 111 -151 21 0 0 0 chr1 60321215 60321236 -221872428 + AT_rich Low_complexity Low_complexity 1 21 0 250 309 0 32 chr1 60321236 60321330 -221872334 - L1ME1 LINE L1 -25 6141 6051 660 175 60 48 chr1 60321487 60321653 -221872011 - L1ME2 LINE L1 -66 6098 5931 259 323 65 0 chr1 60321816 60321909 -221871755 - MIR SINE MIR -25 237 139 724 173 0 77 chr1 60321940 60322096 -221871568 - MIR SINE MIR -105 157 14 374 298 125 0 chr1 60322134 60322302 -221871362 - L1ME2 LINE L1 -2010 5798 5610 231 329 131 13 chr1 60322847 60322964 -221870700 + MIR SINE MIR 40 166 -42 549 247 156 19 chr1 60323333 60323487 -221870177 + MIR SINE MIR 13 187 -75 237 243 14 0 chr1 60324123 60324193 -221869471 + L1ME LINE L1 5852 5922 -199 1182 272 73 11 chr1 60324211 60324678 -221868986 + L1ME LINE L1 40 535 -5861 5047 216 60 47 chr1 60324690 60326134 -221867530 + L1ME LINE L1 3789 5212 -1023 2228 137 0 6 chr1 60326134 60326448 -221867216 + AluSx SINE Alu 1 312 0 5047 216 60 47 chr1 60326448 60326488 -221867176 + L1ME LINE L1 5212 5250 -985 674 124 0 58 chr1 60326488 60326625 -221867039 + L1MB7 LINE L1 6045 6173 -11 5047 216 60 47 chr1 60326625 60326867 -221866797 + L1ME LINE L1 5250 5535 -700 1079 209 24 5 chr1 60327209 60327419 -221866245 - MLT1A1 LTR MaLR 0 365 152 821 141 31 0 chr1 60327424 60327552 -221866112 - AluSq/x SINE Alu -180 132 1 661 167 129 0 chr1 60327559 60327691 -221865973 - MLT1A1 LTR MaLR -216 149 1 183 42 0 0 chr1 60328371 60328395 -221865269 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 293 260 135 0 chr1 60328457 60328553 -221865111 - L2 LINE L2 -1 3271 3163 2122 140 0 19 chr1 60328822 60329136 -221864528 - AluJb SINE Alu -4 308 1 1020 310 103 27 chr1 60329526 60330003 -221863661 - MLT1K LTR MaLR -10 578 66 2054 49 0 4 chr1 60330582 60330826 -221862838 + AluY SINE Alu 67 309 -2 270 0 0 0 chr1 60331818 60331848 -221861816 + (TG)n Simple_repeat Simple_repeat 2 31 0 972 197 90 10 chr1 60332415 60332706 -221860958 - MER33 DNA MER1_type -22 302 1 195 255 104 76 chr1 60333314 60333565 -221860099 + L2 LINE L2 2910 3167 -105 1014 252 102 11 chr1 60333929 60334310 -221859354 - L1ME1 LINE L1 -7 6159 5744 386 250 104 0 chr1 60334894 60334990 -221858674 + MIR SINE MIR 43 148 -60 607 194 17 142 chr1 60335252 60335367 -221858297 + MIR SINE MIR 44 117 -145 2299 95 3 3 chr1 60335367 60335661 -221858003 + AluSx SINE Alu 1 294 -18 607 194 17 142 chr1 60335661 60335777 -221857887 + MIR SINE MIR 117 246 -16 205 251 126 60 chr1 60336580 60336763 -221856901 - MIR SINE MIR -40 222 28 3523 180 96 54 chr1 60336913 60337865 -221855799 + LTR13 LTR ERVK 16 1007 0 544 261 90 48 chr1 60337870 60338180 -221855484 - L1ME1 LINE L1 -30 6136 5814 325 286 43 21 chr1 60338155 60338295 -221855369 - L1ME1 LINE L1 -2287 3859 3717 * 405 273 35 23 chr1 60338708 60338880 -221854784 + GA-rich Low_complexity Low_complexity 3 176 0 1382 237 40 51 chr1 60339017 60339486 -221854178 + MLT1C LTR MaLR 4 467 0 2366 142 13 13 chr1 60339514 60339901 -221853763 + MLT1B LTR MaLR 1 387 -3 1102 223 247 46 chr1 60340272 60340900 -221852764 + MER52A LTR ERV1 437 777 -243 232 318 45 85 chr1 60340933 60341156 -221852508 + MER52A LTR ERV1 1259 1472 -283 414 231 8 67 chr1 60341157 60341291 -221852373 + MER52A LTR ERV1 1601 1726 -29 441 279 60 27 chr1 60341444 60341624 -221852040 - MIR3 SINE MIR -15 193 8 1464 187 27 62 chr1 60342219 60342593 -221851071 - MLT1A2 LTR MaLR -13 361 1 985 129 0 22 chr1 60343645 60343895 -221849769 - AluJb SINE Alu -21 291 2 774 293 49 4 chr1 60344086 60344311 -221849353 - MIR SINE MIR -8 254 20 441 321 134 35 chr1 60344462 60344836 -221848828 - L2 LINE L2 -51 3221 2811 1969 186 67 10 chr1 60345268 60345671 -221847993 + MSTB LTR MaLR 1 426 0 207 257 243 14 chr1 60347468 60347542 -221846122 - MIR SINE MIR -149 113 23 217 261 0 0 chr1 60349183 60349229 -221844435 - L2 LINE L2 0 3313 3268 588 200 200 6 chr1 60349780 60349950 -221843714 + MIR SINE MIR 52 254 -8 216 384 49 30 chr1 60351876 60352040 -221841624 + L2 LINE L2 3106 3272 0 208 282 97 32 chr1 60352721 60352845 -221840819 - L2 LINE L2 -652 2662 2531 206 323 84 68 chr1 60353004 60353255 -221840409 + L2 LINE L2 3018 3272 0 400 305 105 20 chr1 60354566 60354766 -221838898 - MIR SINE MIR 0 262 46 422 213 139 0 chr1 60355682 60355790 -221837874 + MIR SINE MIR 31 153 -109 229 197 53 66 chr1 60355794 60355870 -221837794 + MLT1L LTR MaLR 4 78 -537 800 247 89 74 chr1 60355876 60355992 -221837672 + MLT1L LTR MaLR 195 308 -307 2086 130 3 37 chr1 60355992 60356315 -221837349 + AluSx SINE Alu 1 312 0 800 247 89 74 chr1 60356315 60356591 -221837073 + MLT1L LTR MaLR 308 593 -22 207 0 0 0 chr1 60356591 60356614 -221837050 + (CA)n Simple_repeat Simple_repeat 1 23 0 257 268 62 21 chr1 60356624 60356721 -221836943 + MIR SINE MIR 149 249 -13 2367 122 41 75 chr1 60358128 60358611 -221835053 - L1MB7 LINE L1 -8 6176 5710 695 232 18 6 chr1 60358625 60358793 -221834871 - L1MB5 LINE L1 0 6174 6005 1996 186 73 3 chr1 60358793 60359163 -221834501 + MSTD LTR MaLR 1 396 0 873 178 28 0 chr1 60359164 60359344 -221834320 + MSTD-int LTR MaLR 1 185 -1550 10737 119 28 65 chr1 60359344 60360518 -221833146 + LTR49-int LTR ERV1 3481 4697 -1634 2122 120 0 0 chr1 60360518 60360819 -221832845 + AluSx SINE Alu 1 301 -11 10737 119 28 65 chr1 60360819 60361645 -221832019 + LTR49-int LTR ERV1 4697 5485 -846 1991 105 4 4 chr1 60361645 60361922 -221831742 - AluSc SINE Alu -32 277 1 10737 119 28 65 chr1 60361922 60362032 -221831632 + LTR49-int LTR ERV1 5485 5598 -733 1373 174 102 60 chr1 60362034 60362464 -221831200 + LTR7 LTR ERV1 1 448 -2 7878 108 80 15 chr1 60362466 60363730 -221829934 + HERVH LTR ERV1 1 1346 -6367 8755 90 5 13 chr1 60363834 60365073 -221828591 + HERVH LTR ERV1 1759 2987 -4726 869 147 18 47 chr1 60365045 60365215 -221828449 + HERVH LTR ERV1 3126 3290 -4423 * 3387 112 6 6 chr1 60365205 60365707 -221827957 + HERVH LTR ERV1 3492 3993 -3720 4376 147 1 1 chr1 60365709 60366371 -221827293 + HERVH LTR ERV1 4488 5149 -2564 2556 101 41 42 chr1 60366372 60366974 -221826690 + HERVH LTR ERV1 5600 7713 0 1372 174 105 63 chr1 60366974 60367404 -221826260 + LTR7 LTR ERV1 1 448 -2 4450 108 54 10 chr1 60367405 60368111 -221825553 + LTR49-int LTR ERV1 5595 6331 0 3292 105 114 2 chr1 60368111 60368422 -221825242 + LTR49 LTR ERV1 1 276 -319 408 40 0 0 chr1 60368422 60368472 -221825192 + (TG)n Simple_repeat Simple_repeat 1 50 0 3292 105 114 2 chr1 60368472 60368695 -221824969 + LTR49 LTR ERV1 276 595 0 268 337 35 0 chr1 60368695 60368781 -221824883 + L2 LINE L2 3134 3222 -50 252 0 0 0 chr1 60369492 60369520 -221824144 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 60369591 60369612 -221824052 + AT_rich Low_complexity Low_complexity 1 21 0 933 175 0 65 chr1 60369768 60369968 -221823696 - AluJb SINE Alu -125 187 1 278 329 26 0 chr1 60370074 60370150 -221823514 + MIR SINE MIR 49 126 -136 613 66 22 33 chr1 60370173 60370264 -221823400 - LTR7 LTR ERV1 0 450 361 * 703 75 19 28 chr1 60370255 60370361 -221823303 + LTR7 LTR ERV1 346 450 0 8266 147 40 28 chr1 60370373 60372179 -221821485 + HERVH LTR ERV1 12 2150 -5563 2006 115 87 8 chr1 60372184 60372553 -221821111 + LTR7 LTR ERV1 6 450 0 1115 109 63 0 chr1 60372678 60372853 -221820811 - MER34B LTR ERV1 -29 536 351 769 118 0 63 chr1 60372856 60372983 -221820681 + AluJb SINE Alu 4 122 -190 969 139 22 44 chr1 60373038 60373218 -221820446 + AluJb SINE Alu 135 310 -2 2141 134 47 3 chr1 60373218 60373561 -221820103 - MER34B LTR ERV1 -207 358 1 538 184 18 61 chr1 60373804 60373918 -221819746 - AluJ SINE Alu -39 273 165 532 162 71 0 chr1 60373921 60374020 -221819644 - AluJ SINE Alu -205 107 2 221 279 27 27 chr1 60376954 60377065 -221816599 + (CCCCG)n Simple_repeat Simple_repeat 4 114 0 238 242 76 0 chr1 60377742 60377808 -221815856 - L2 LINE L2 -19 3294 3224 616 119 0 0 chr1 60377879 60377963 -221815701 - AluSx SINE Alu -20 292 209 1000 77 0 8 chr1 60377963 60378093 -221815571 - AluSx SINE Alu -183 129 1 414 254 21 42 chr1 60378125 60378267 -221815397 - L2 LINE L2 -188 3084 2946 206 370 22 11 chr1 60378315 60378407 -221815257 - L2 LINE L2 -457 2857 2765 464 244 85 57 chr1 60378423 60378599 -221815065 + MER5A DNA MER1_type 7 187 -2 1599 243 73 35 chr1 60378824 60379383 -221814281 - MER34B LTR ERV1 -3 562 1 290 181 0 48 chr1 60379383 60379466 -221814198 + L1ME2 LINE L1 6080 6158 -6 2526 117 42 44 chr1 60379759 60380146 -221813518 + MSTA LTR MaLR 1 388 -40 2248 101 0 16 chr1 60380146 60380464 -221813200 - AluSq SINE Alu 0 313 1 2526 117 42 44 chr1 60380464 60380505 -221813159 + MSTA LTR MaLR 388 428 0 722 109 182 40 chr1 60380525 60380745 -221812919 + MER106B DNA MER1_type 1 236 0 285 242 63 32 chr1 60380757 60380852 -221812812 - MER103 DNA DNA -48 118 21 2307 97 0 0 chr1 60380881 60381191 -221812473 - AluSx SINE Alu -2 310 1 2013 125 3 3 chr1 60381215 60381520 -221812144 - AluSx SINE Alu -7 305 1 6982 107 16 21 chr1 60381823 60382835 -221810829 + LTR13 LTR ERVK 1 1007 0 1548 176 3 14 chr1 60382861 60383151 -221810513 - AluJb SINE Alu -25 287 1 1998 181 79 7 chr1 60383250 60383653 -221810011 - MSTB1 LTR MaLR 0 432 1 324 109 0 0 chr1 60383933 60383979 -221809685 - L2 LINE L2 0 3313 3268 201 179 51 0 chr1 60383953 60383992 -221809672 - MIR SINE MIR -14 248 208 * 192 300 246 0 chr1 60384078 60384188 -221809476 - MIR SINE MIR 0 262 126 2541 123 29 0 chr1 60384855 60385236 -221808428 + MER57A LTR ERV1 8 399 -4 3690 205 46 14 chr1 60385406 60386167 -221807497 - MER21B LTR ERV1 -60 803 19 507 165 11 22 chr1 60386189 60386280 -221807384 - MER21B LTR ERV1 -773 90 1 305 303 40 106 chr1 60386293 60386567 -221807097 + MIR SINE MIR 1 256 -6 2965 63 95 2 chr1 60386790 60387200 -221806464 + LTR7 LTR ERV1 1 448 -2 308 307 0 35 chr1 60387328 60387442 -221806222 - MER81 DNA DNA -4 110 1 269 317 117 23 chr1 60387481 60387715 -221805949 + MIR SINE MIR 3 256 -6 1828 5 0 0 chr1 60387934 60388137 -221805527 + L1PA2 LINE L1 5953 6155 0 1207 160 42 29 chr1 60389295 60389607 -221804057 - MER33 DNA MER1_type -4 320 5 218 228 25 76 chr1 60389749 60389828 -221803836 - MIR SINE MIR -13 249 175 471 261 122 27 chr1 60389880 60390068 -221803596 + MIR SINE MIR 2 207 -55 300 287 32 11 chr1 60390159 60390253 -221803411 - MIR SINE MIR -137 125 30 194 180 180 16 chr1 60390494 60390555 -221803109 + L2 LINE L2 3220 3290 -23 978 194 6 0 chr1 60390762 60390927 -221802737 + FRAM SINE Alu 1 166 0 448 357 100 21 chr1 60391618 60391859 -221801805 + L2 LINE L2 2997 3256 -16 209 256 0 0 chr1 60391826 60391865 -221801799 + MIR SINE MIR 220 258 -4 * 971 219 32 16 chr1 60392037 60392288 -221801376 + MIR SINE MIR 8 262 0 207 286 0 0 chr1 60392483 60392532 -221801132 - L2 LINE L2 0 3313 3265 1242 198 63 4 chr1 60393295 60393586 -221800078 + AluJb SINE Alu 2 308 0 1297 157 124 8 chr1 60394306 60394573 -221799091 - AluJb SINE Alu -14 298 1 2071 109 0 14 chr1 60394594 60394888 -221798776 - AluSx SINE Alu -22 290 1 199 155 0 35 chr1 60395377 60395435 -221798229 + G-rich Low_complexity Low_complexity 4 59 0 399 21 0 0 chr1 60395438 60395486 -221798178 + (GA)n Simple_repeat Simple_repeat 1 48 0 2329 80 0 3 chr1 60395529 60395842 -221797822 + AluSx SINE Alu 1 312 0 25 0 0 0 chr1 60395964 60395989 -221797675 + AT_rich Low_complexity Low_complexity 1 25 0 585 164 107 25 chr1 60396009 60396131 -221797533 - FLAM_A SINE Alu -1 132 1 189 121 0 0 chr1 60397072 60397105 -221796559 + (CCCCCG)n Simple_repeat Simple_repeat 5 37 0 188 171 105 114 chr1 60399382 60399487 -221794177 - L2 LINE L2 -165 3107 3004 329 268 72 22 chr1 60399971 60400109 -221793555 - MIR SINE MIR -89 173 29 200 247 0 62 chr1 60400082 60400163 -221793501 - MIR3 SINE MIR -118 90 15 * 606 300 35 31 chr1 60400717 60400944 -221792720 + MIR SINE MIR 23 250 -12 354 258 144 8 chr1 60400963 60401095 -221792569 + MER103 DNA DNA 8 157 -9 340 286 27 60 chr1 60401550 60401727 -221791937 + MIR SINE MIR 4 173 -75 201 74 0 0 chr1 60402053 60402080 -221791584 + (CCG)n Simple_repeat Simple_repeat 2 28 0 223 205 114 65 chr1 60402420 60402535 -221791129 - MIR SINE MIR -69 139 6 197 307 67 13 chr1 60402696 60402771 -221790893 + MIR SINE MIR 20 98 -110 239 194 0 48 chr1 60402981 60403043 -221790621 - MIR SINE MIR -87 175 117 675 241 29 23 chr1 60403103 60403277 -221790387 + MIR SINE MIR 14 188 -74 337 320 10 0 chr1 60403368 60403468 -221790196 - MIR SINE MIR -63 145 45 2152 114 0 9 chr1 60403583 60403898 -221789766 + AluSx SINE Alu 1 312 0 2392 60 0 60 chr1 60406116 60406447 -221787217 - AluY SINE Alu 0 311 1 190 271 56 47 chr1 60407061 60407168 -221786496 + L2 LINE L2 2658 2765 -549 2216 113 0 0 chr1 60407169 60407471 -221786193 + AluSx SINE Alu 1 302 -10 259 385 76 28 chr1 60407928 60408325 -221785339 + L2 LINE L2 2857 3272 0 482 288 141 0 chr1 60408446 60408616 -221785048 - MIR SINE MIR -6 256 63 1947 147 7 0 chr1 60409066 60409352 -221784312 - AluJb SINE Alu -24 288 1 471 333 68 32 chr1 60409795 60410044 -221783620 - MIR SINE MIR -3 259 2 2258 100 0 3 chr1 60410291 60410590 -221783074 + AluSg SINE Alu 1 298 -12 25 0 0 0 chr1 60410752 60410777 -221782887 + AT_rich Low_complexity Low_complexity 1 25 0 1048 166 31 5 chr1 60410920 60411113 -221782551 - L1MD2 LINE L1 -1 6358 6161 782 193 86 5 chr1 60411121 60411308 -221782356 - L1M4 LINE L1 -1152 4994 4793 2213 193 51 14 chr1 60411379 60411867 -221781797 - Charlie4a DNA MER1_type 0 508 3 380 204 97 0 chr1 60411893 60411996 -221781668 - L1MC4a LINE L1 -1982 5826 5714 215 338 15 0 chr1 60412899 60412967 -221780697 - L2 LINE L2 0 3313 3245 365 323 227 0 chr1 60413419 60413784 -221779880 + L2 LINE L2 1884 2331 -983 666 310 63 29 chr1 60413874 60414284 -221779380 - LTR33 LTR ERVL -83 438 15 607 365 52 14 chr1 60414524 60414965 -221778699 - HERVL LTR ERVL -387 5377 4920 479 310 70 19 chr1 60414993 60415379 -221778285 - LTR16A1 LTR ERVL -3 454 74 566 191 9 9 chr1 60415529 60415644 -221778020 + L1MB7 LINE L1 6070 6184 0 1370 298 75 17 chr1 60415667 60416168 -221777496 - HERVL LTR ERVL -1003 4761 4168 996 213 69 113 chr1 60416168 60416343 -221777321 + MLT1A2 LTR MaLR 2 183 -191 1769 154 6 44 chr1 60416343 60416661 -221777003 + AluJb SINE Alu 1 306 -6 996 213 69 113 chr1 60416661 60416875 -221776789 + MLT1A2 LTR MaLR 183 374 0 1370 298 75 17 chr1 60416875 60417059 -221776605 - HERVL LTR ERVL -1596 4168 3996 701 71 0 143 chr1 60417082 60417208 -221776456 - AluJo SINE Alu -177 135 28 894 291 121 18 chr1 60417208 60417648 -221776016 - HERVL LTR ERVL -1766 3998 3514 1477 173 64 48 chr1 60417775 60418133 -221775531 - MLT1E3 LTR MaLR 0 624 261 363 207 138 9 chr1 60418152 60418268 -221775396 - MLT1E3 LTR MaLR -519 135 5 239 300 132 11 chr1 60418303 60418493 -221775171 - LTR33 LTR ERVL -17 504 292 617 225 46 37 chr1 60418522 60418740 -221774924 - LTR33 LTR ERVL -298 223 4 628 338 50 7 chr1 60418797 60419193 -221774471 - HERVL LTR ERVL -2400 3254 2911 278 235 12 12 chr1 60419234 60419315 -221774349 - LTR33 LTR ERVL -392 129 49 307 262 163 20 chr1 60419971 60420173 -221773491 + L2 LINE L2 2826 3056 -257 301 223 204 10 chr1 60420802 60420905 -221772759 - MIR3 SINE MIR -53 155 33 391 313 25 20 chr1 60421002 60421163 -221772501 + MIR SINE MIR 14 144 -64 262 362 57 0 chr1 60421921 60422062 -221771602 - L2 LINE L2 -301 2971 2823 319 343 86 0 chr1 60422062 60422202 -221771462 - L2 LINE L2 -207 3065 2914 196 272 26 70 chr1 60423679 60423793 -221769871 - MER5A DNA MER1_type -79 110 2 182 291 149 14 chr1 60424029 60424170 -221769494 - L2 LINE L2 -329 2984 2825 1436 290 97 56 chr1 60425034 60425241 -221768423 - HAL1 LINE L1 -1 2506 2309 1494 72 5 0 chr1 60425241 60425434 -221768230 + AluY SINE Alu 106 299 -12 1436 290 97 56 chr1 60425434 60425986 -221767678 - HAL1 LINE L1 -198 2309 1781 1806 130 30 23 chr1 60425986 60426287 -221767377 + AluJb SINE Alu 1 303 -9 1436 290 97 56 chr1 60426287 60426714 -221766950 - HAL1 LINE L1 -726 1781 1373 2184 113 0 0 chr1 60426714 60427006 -221766658 - AluSg SINE Alu -18 292 1 1436 290 97 56 chr1 60427006 60427355 -221766309 - HAL1 LINE L1 -1134 1373 723 278 281 88 25 chr1 60427529 60427689 -221765975 - HAL1 LINE L1 -2080 427 258 355 269 120 4 chr1 60427950 60428113 -221765551 - MIR SINE MIR -1 261 78 1808 167 17 7 chr1 60428710 60429010 -221764654 + AluJb SINE Alu 1 303 -9 2061 96 57 0 chr1 60429014 60429295 -221764369 + AluSq SINE Alu 1 297 -16 2140 136 0 0 chr1 60429343 60429653 -221764011 + AluSx SINE Alu 1 310 -2 1972 144 0 6 chr1 60429663 60429976 -221763688 + AluSx SINE Alu 1 311 -1 5252 198 59 22 chr1 60429976 60431055 -221762609 - L1MB7 LINE L1 -9 6175 5137 1572 140 0 0 chr1 60431055 60431283 -221762381 - AluJb SINE Alu 0 312 85 5252 198 59 22 chr1 60431283 60431863 -221761801 - L1MB7 LINE L1 -1047 5137 4580 2096 125 0 0 chr1 60431863 60432151 -221761513 + AluSx SINE Alu 1 288 -24 5252 198 59 22 chr1 60432151 60432361 -221761303 - L1MB7 LINE L1 -1604 4580 4379 393 39 0 0 chr1 60432361 60432412 -221761252 + (TG)n Simple_repeat Simple_repeat 2 52 0 5252 198 59 22 chr1 60432412 60432729 -221760935 - L1MB7 LINE L1 -1805 4379 3934 324 246 42 17 chr1 60432806 60432924 -221760740 - L1ME4a LINE L1 -38 6083 5963 269 289 36 0 chr1 60433359 60433442 -221760222 + MIR3 SINE MIR 93 178 -30 235 286 54 36 chr1 60433702 60433814 -221759850 + MIR3 SINE MIR 2 115 -93 195 42 0 0 chr1 60434031 60434055 -221759609 + (TC)n Simple_repeat Simple_repeat 1 24 0 369 290 20 0 chr1 60434731 60434803 -221758861 - MIR SINE MIR -116 146 70 1938 136 19 16 chr1 60434803 60435112 -221758552 - AluJb SINE Alu -2 310 1 369 290 20 0 chr1 60435112 60435139 -221758525 - MIR SINE MIR -192 70 45 227 316 32 21 chr1 60435220 60435315 -221758349 + MIR SINE MIR 48 143 -65 342 280 190 20 chr1 60435394 60435594 -221758070 - MIR SINE MIR -19 243 10 1962 126 13 13 chr1 60435604 60435914 -221757750 - AluSx SINE Alu -2 310 1 286 261 182 17 chr1 60436396 60436558 -221757106 - MIR3 SINE MIR -57 151 12 306 224 231 15 chr1 60436664 60436798 -221756866 + MIR SINE MIR 77 239 -23 244 352 92 0 chr1 60436800 60436942 -221756722 - MER5B DNA MER1_type -5 173 19 197 250 67 0 chr1 60436971 60437031 -221756633 - MIR SINE MIR -63 145 82 255 286 0 14 chr1 60437528 60437598 -221756066 - L2 LINE L2 -4 3268 3200 267 219 162 29 chr1 60438389 60438494 -221755170 + MIR SINE MIR 27 146 -62 294 336 9 0 chr1 60438821 60438931 -221754733 - L2 LINE L2 -18 3295 3185 393 248 26 39 chr1 60439441 60439688 -221753976 + GA-rich Low_complexity Low_complexity 1 243 0 231 224 0 30 chr1 60440346 60440413 -221753251 + CT-rich Low_complexity Low_complexity 2 66 0 493 256 19 70 chr1 60440786 60440901 -221752763 + MIR SINE MIR 2 108 -154 2358 75 0 3 chr1 60440901 60441208 -221752456 - AluSx SINE Alu -5 307 2 493 256 19 70 chr1 60441208 60441248 -221752416 + MIR SINE MIR 108 149 -113 212 299 218 0 chr1 60441734 60441821 -221751843 + MIR SINE MIR 43 148 -60 573 260 141 18 chr1 60443721 60443948 -221749716 - MIR SINE MIR -7 255 1 387 200 88 0 chr1 60445250 60445330 -221748334 + L2 LINE L2 3209 3295 -18 230 171 0 0 chr1 60445476 60445517 -221748147 + MIR SINE MIR 107 147 -115 233 370 46 19 chr1 60446770 60446878 -221746786 + MIR SINE MIR 19 129 -133 247 236 79 56 chr1 60447043 60447132 -221746532 - MIR SINE MIR -92 170 80 200 229 21 0 chr1 60447328 60447376 -221746288 - L3 LINE CR1 -100 1477 1429 208 270 244 60 chr1 60449956 60450275 -221743389 + L2 LINE L2 2895 3272 0 563 338 54 36 chr1 60451412 60451577 -221742087 + L3 LINE CR1 988 1149 -428 444 37 0 0 chr1 60451577 60451631 -221742033 + (TG)n Simple_repeat Simple_repeat 2 55 0 563 338 54 36 chr1 60451631 60451947 -221741717 + L3 LINE CR1 1149 1543 -34 229 313 16 0 chr1 60451948 60452012 -221741652 + MER91A DNA MER1_type 2 66 -130 240 35 0 0 chr1 60452327 60452356 -221741308 + (A)n Simple_repeat Simple_repeat 1 29 0 1979 106 35 0 chr1 60453058 60453342 -221740322 + AluSx SINE Alu 18 311 -1 374 259 135 12 chr1 60453470 60453640 -221740024 - MIR SINE MIR -3 259 69 190 146 24 0 chr1 60454708 60454749 -221738915 + L2 LINE L2 3209 3250 -22 311 287 69 10 chr1 60454789 60454958 -221738706 + MIR SINE MIR 15 258 -4 221 309 171 0 chr1 60455216 60455339 -221738325 + MIR SINE MIR 116 259 -3 249 320 41 16 chr1 60455383 60455505 -221738159 + MIR3 SINE MIR 43 167 -41 214 339 89 18 chr1 60455591 60455703 -221737961 + L3 LINE CR1 1455 1574 -3 218 271 17 0 chr1 60456302 60456361 -221737303 + MIR SINE MIR 86 145 -63 413 284 147 27 chr1 60456517 60456809 -221736855 - L2 LINE L2 -54 3218 2892 251 200 18 0 chr1 60457371 60457426 -221736238 + MIR SINE MIR 89 144 -118 348 150 17 0 chr1 60457451 60457511 -221736153 - LTR16B LTR ERVL -2 462 402 280 220 23 114 chr1 60457619 60457751 -221735913 - LTR16B LTR ERVL -238 226 107 331 320 33 29 chr1 60457892 60458068 -221735596 + MIR SINE MIR 11 187 -69 196 313 24 0 chr1 60458418 60458501 -221735163 - MIR SINE MIR -63 145 61 489 258 30 36 chr1 60459016 60459148 -221734516 + MIR SINE MIR 13 145 -117 1577 181 3 20 chr1 60459148 60459440 -221734224 + AluJo SINE Alu 12 298 -14 489 258 30 36 chr1 60459440 60459474 -221734190 + MIR SINE MIR 145 178 -84 706 107 215 0 chr1 60459486 60459607 -221734057 - FRAM SINE Alu 0 40 1 208 305 0 0 chr1 60459612 60459671 -221733993 + MIR SINE MIR 167 225 -37 337 295 21 0 chr1 60459943 60460038 -221733626 + L2 LINE L2 3217 3313 0 366 313 28 21 chr1 60460544 60460688 -221732976 - MIR SINE MIR -7 255 111 221 333 136 25 chr1 60460827 60460989 -221732675 + L2 LINE L2 3094 3273 -40 240 111 0 0 chr1 60461135 60461171 -221732493 + (CGGA)n Simple_repeat Simple_repeat 2 37 0 376 340 93 0 chr1 60461539 60461701 -221731963 + MIR3 SINE MIR 12 188 -20 359 83 62 10 chr1 60463044 60463140 -221730524 + (CA)n Simple_repeat Simple_repeat 1 101 0 211 287 199 0 chr1 60463543 60463679 -221729985 - MIR SINE MIR -20 242 80 202 152 25 76 chr1 60464494 60464573 -221729091 + GA-rich Low_complexity Low_complexity 4 78 0 427 271 119 7 chr1 60464878 60465029 -221728635 + MIR SINE MIR 21 188 -74 260 329 13 0 chr1 60465138 60465217 -221728447 + MIR3 SINE MIR 109 188 -20 193 293 50 40 chr1 60465243 60465342 -221728322 + MIR3 SINE MIR 89 188 -20 280 354 37 24 chr1 60465490 60465654 -221728010 + MIR SINE MIR 46 211 -51 498 184 51 63 chr1 60466017 60466175 -221727489 + MER20 DNA MER1_type 1 156 -63 242 335 103 28 chr1 60466827 60467009 -221726655 + MIR SINE MIR 9 201 -61 389 297 101 0 chr1 60467504 60467642 -221726022 - MIR SINE MIR -83 179 28 188 325 121 32 chr1 60468681 60468838 -221724826 - L2 LINE L2 -580 2734 2564 221 387 87 7 chr1 60469574 60469724 -221723940 + L2 LINE L2 2898 3059 -213 251 312 100 41 chr1 60470353 60470523 -221723141 - MIR SINE MIR -1 261 82 264 354 117 16 chr1 60471485 60471742 -221721922 - L2 LINE L2 -172 3100 2818 308 327 124 39 chr1 60472148 60472582 -221721082 + L2 LINE L2 2420 2890 -424 599 265 55 30 chr1 60473074 60473274 -221720390 - MIR SINE MIR -48 214 10 308 307 186 0 chr1 60474123 60474263 -221719401 + MIR SINE MIR 86 251 -11 204 254 199 55 chr1 60474952 60475148 -221718516 - MIR3 SINE MIR -9 253 5 210 205 0 0 chr1 60475825 60475903 -221717761 + (CA)n Simple_repeat Simple_repeat 2 79 0 185 264 57 0 chr1 60476117 60476170 -221717494 - MIR SINE MIR -80 182 127 216 162 0 0 chr1 60476260 60476297 -221717367 + MIR SINE MIR 210 246 -16 2292 85 16 0 chr1 60476321 60476626 -221717038 + AluSx SINE Alu 1 310 -2 648 242 45 50 chr1 60477549 60477747 -221715917 + MIR SINE MIR 66 262 0 4359 176 22 4 chr1 60477772 60478709 -221714955 + L1MB8 LINE L1 5227 6178 0 182 237 0 0 chr1 60479270 60479308 -221714356 - MIR3 SINE MIR -14 194 157 327 311 39 0 chr1 60479472 60479575 -221714089 - L1ME4a LINE L1 -12 6109 6003 584 291 57 17 chr1 60480160 60480335 -221713329 + MIR3 SINE MIR 21 202 -6 551 263 45 94 chr1 60480410 60480741 -221712923 - L2 LINE L2 -7 3265 2951 456 309 48 6 chr1 60480872 60481037 -221712627 - MIR SINE MIR -60 202 31 181 297 174 7 chr1 60481454 60481592 -221712072 - MIR SINE MIR -70 192 32 418 284 100 17 chr1 60481758 60481997 -221711667 - L1ME4a LINE L1 -17 6104 5846 260 226 16 0 chr1 60482007 60482069 -221711595 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 183 267 133 38 chr1 60482711 60482816 -221710848 - L2 LINE L2 -303 2969 2855 190 365 74 14 chr1 60483990 60484138 -221709526 + MIR SINE MIR 51 207 -55 284 200 33 0 chr1 60484991 60485051 -221708613 - L2 LINE L2 -1 3271 3210 188 360 34 0 chr1 60485614 60485703 -221707961 + MIR SINE MIR 89 180 -82 194 245 19 19 chr1 60485908 60485961 -221707703 - L2 LINE L2 -5 3267 3215 186 355 37 56 chr1 60486214 60486321 -221707343 - L3 LINE CR1 -77 1500 1396 238 351 18 18 chr1 60486761 60486872 -221706792 - MIR3 SINE MIR -85 123 13 235 282 191 0 chr1 60487403 60487534 -221706130 - L2 LINE L2 -212 3060 2905 244 308 77 46 chr1 60488635 60488765 -221704899 - MIR SINE MIR -65 197 64 254 400 45 0 chr1 60488958 60489068 -221704596 - L3 LINE CR1 -13 1564 1450 208 153 0 51 chr1 60489116 60489175 -221704489 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 894 326 72 42 chr1 60489176 60489698 -221703966 - L2 LINE L2 -7 3306 2779 304 335 58 35 chr1 60489933 60490106 -221703558 - MIR SINE MIR -56 206 30 257 329 13 0 chr1 60490231 60490310 -221703354 - MIR SINE MIR -82 126 47 1044 98 22 71 chr1 60491003 60491033 -221702631 + L1MA2 LINE L1 6130 6160 -144 2079 96 0 0 chr1 60491033 60491315 -221702349 + AluY SINE Alu 30 311 0 1044 98 22 71 chr1 60491315 60491468 -221702196 + L1MA2 LINE L1 6160 6304 0 483 261 11 33 chr1 60491513 60491697 -221701967 + (TG)n Simple_repeat Simple_repeat 1 180 0 220 208 13 13 chr1 60491738 60491815 -221701849 + (TG)n Simple_repeat Simple_repeat 1 77 0 287 226 11 28 chr1 60491886 60492067 -221701597 + (TG)n Simple_repeat Simple_repeat 1 178 0 519 274 3 33 chr1 60492081 60492454 -221701210 + (TG)n Simple_repeat Simple_repeat 1 361 0 273 309 0 36 chr1 60492469 60492608 -221701056 + (TG)n Simple_repeat Simple_repeat 1 134 0 186 271 0 23 chr1 60492622 60492755 -221700909 + (TG)n Simple_repeat Simple_repeat 2 131 0 606 284 57 16 chr1 60492987 60493181 -221700483 - MIR SINE MIR -30 232 31 204 237 51 17 chr1 60494027 60494086 -221699578 + MIR SINE MIR 33 93 -115 294 230 65 79 chr1 60494354 60494493 -221699171 + L2 LINE L2 3136 3272 0 372 306 0 6 chr1 60495520 60495680 -221697984 + (CA)n Simple_repeat Simple_repeat 2 160 0 445 269 115 0 chr1 60495688 60495818 -221697846 + L2 LINE L2 2933 3077 -195 181 425 21 0 chr1 60496195 60496289 -221697375 - L3 LINE CR1 -176 1401 1306 202 306 97 0 chr1 60496402 60496474 -221697190 - L2 LINE L2 -9 3304 3226 440 225 48 159 chr1 60496780 60497007 -221696657 - MIR SINE MIR -17 245 44 233 341 181 7 chr1 60497637 60497775 -221695889 - MIR SINE MIR -72 190 29 234 298 71 24 chr1 60497937 60498021 -221695643 + L3 LINE CR1 1423 1510 -67 283 330 92 0 chr1 60498481 60498590 -221695074 + MIR SINE MIR 103 221 -41 251 294 43 22 chr1 60498632 60498724 -221694940 - MIR SINE MIR -51 211 118 656 278 74 117 chr1 60498897 60499315 -221694349 + L1MEd LINE L1 638 1037 -5082 207 243 0 0 chr1 60699320 60699357 -221494307 + (CA)n Simple_repeat Simple_repeat 2 38 0 570 184 10 0 chr1 60699360 60699463 -221494201 + MER58B DNA MER1_type 233 336 -5 260 156 0 0 chr1 60699496 60699541 -221494123 + MIR SINE MIR 77 121 -87 329 262 85 50 chr1 60700100 60700241 -221493423 - MIR SINE MIR 0 262 117 380 271 139 0 chr1 60700282 60700411 -221493253 + MIR3 SINE MIR 53 199 -9 253 354 61 7 chr1 60700853 60701057 -221492607 + MIR SINE MIR 21 235 -27 343 306 52 8 chr1 60701206 60701340 -221492324 + MIR SINE MIR 49 188 -74 220 371 43 29 chr1 60701456 60701597 -221492067 + MIR SINE MIR 2 143 -65 471 306 14 7 chr1 60702497 60702644 -221491020 + MIR SINE MIR 5 152 -110 247 184 20 0 chr1 60703209 60703258 -221490406 - MIR SINE MIR -61 147 98 264 250 114 23 chr1 60703638 60703726 -221489938 + L2 LINE L2 3154 3249 -23 210 280 65 11 chr1 60703737 60703830 -221489834 + MIR SINE MIR 98 195 -67 2654 108 64 15 chr1 60704681 60705089 -221488575 - MSTC LTR MaLR 0 428 1 448 305 46 26 chr1 60705252 60705403 -221488261 - L2 LINE L2 -1 3312 3159 1865 197 47 21 chr1 60705498 60705713 -221487951 - MLT1B LTR MaLR 0 390 159 1943 119 28 0 chr1 60705713 60705999 -221487665 - AluJb SINE Alu -18 294 1 1865 197 47 21 chr1 60705999 60706163 -221487501 - MLT1B LTR MaLR -231 159 1 1302 57 39 0 chr1 60706873 60707110 -221486554 - AluY SINE Alu -12 299 88 280 241 16 11 chr1 60707717 60707812 -221485852 - MIR SINE MIR -61 147 97 273 305 29 9 chr1 60708182 60708287 -221485377 - MIR SINE MIR -59 149 43 1514 160 4 12 chr1 60708767 60709023 -221484641 - AluJo SINE Alu -58 254 1 204 250 0 36 chr1 60709024 60709080 -221484584 + CT-rich Low_complexity Low_complexity 4 57 0 246 280 0 0 chr1 60710782 60710832 -221482832 + (CACG)n Simple_repeat Simple_repeat 1 50 0 243 255 9 66 chr1 60711950 60712056 -221481608 - MIR3 SINE MIR 0 208 109 647 242 46 3 chr1 60712505 60712687 -221480977 - MIR SINE MIR 0 262 69 237 267 77 16 chr1 60712737 60712836 -221480828 - MIR SINE MIR -102 106 2 612 270 16 21 chr1 60713914 60714103 -221479561 + MIR SINE MIR 13 200 -62 1091 138 0 0 chr1 60714987 60715146 -221478518 + FRAM SINE Alu 1 157 -19 259 257 30 40 chr1 60715149 60715250 -221478414 - MIR SINE MIR -84 124 25 190 152 0 0 chr1 60715353 60715386 -221478278 - MIR SINE MIR -109 153 121 223 194 97 48 chr1 60715907 60715969 -221477695 - L2 LINE L2 -15 3257 3193 402 276 115 42 chr1 60716129 60716346 -221477318 - MIR SINE MIR -15 247 15 363 265 86 0 chr1 60716419 60716536 -221477128 - L2 LINE L2 -4 3268 3142 199 162 27 0 chr1 60716964 60717001 -221476663 - MIR SINE MIR -61 147 110 348 276 86 0 chr1 60717117 60717233 -221476431 + L2 LINE L2 2910 3035 -237 401 281 129 14 chr1 60717546 60717685 -221475979 + MIR SINE MIR 38 192 -70 364 250 67 10 chr1 60717828 60717932 -221475732 + MIR SINE MIR 52 150 -58 419 286 76 30 chr1 60718218 60718384 -221475280 + MIR3 SINE MIR 10 182 -61 274 231 28 65 chr1 60718667 60718775 -221474889 + C-rich Low_complexity Low_complexity 3 106 0 487 291 137 11 chr1 60718827 60719009 -221474655 + MIR SINE MIR 43 247 -15 231 250 26 66 chr1 60719451 60719527 -221474137 + MIR3 SINE MIR 117 189 -19 235 386 54 7 chr1 60719770 60720086 -221473578 - L2 LINE L2 -222 3050 2718 314 276 138 0 chr1 60721448 60721564 -221472100 - MIR3 SINE MIR -68 140 9 240 192 13 77 chr1 60721711 60721789 -221471875 - MIR SINE MIR -55 153 81 566 283 54 11 chr1 60722157 60722341 -221471323 + MIR3 SINE MIR 1 192 -16 765 297 174 10 chr1 60722424 60722815 -221470849 + L2 LINE L2 2815 3269 -3 274 308 75 0 chr1 60723136 60723243 -221470421 - MIR3 SINE MIR -11 197 83 292 95 0 0 chr1 60723586 60723628 -221470036 - MIR SINE MIR -63 145 104 977 173 100 5 chr1 60725066 60725286 -221468378 + ORSL DNA AcHobo 33 273 -2 234 235 0 0 chr1 60725346 60725397 -221468267 + MIR3 SINE MIR 104 154 -54 440 198 33 0 chr1 60725960 60726051 -221467613 - MIR SINE MIR -88 174 81 263 196 0 0 chr1 60726403 60726449 -221467215 - LTR67 LTR ERVL -2 555 510 221 310 0 0 chr1 60727496 60727554 -221466110 + (TG)n Simple_repeat Simple_repeat 1 58 0 441 252 172 0 chr1 60727797 60727948 -221465716 - MIR SINE MIR -29 233 57 322 279 159 96 chr1 60728524 60728889 -221464775 - L2 LINE L2 0 3272 2885 340 159 0 17 chr1 60729668 60729741 -221463923 + MIR SINE MIR 73 143 -65 269 269 39 0 chr1 60729871 60729949 -221463715 - L2 LINE L2 -1 3312 3232 263 349 12 6 chr1 60730582 60730748 -221462916 + (TG)n Simple_repeat Simple_repeat 2 168 0 248 350 112 0 chr1 60730931 60731074 -221462590 + L3 LINE CR1 1323 1481 -96 223 299 128 26 chr1 60731284 60731401 -221462263 - MIR SINE MIR -67 141 51 282 310 136 33 chr1 60731879 60732092 -221461572 - MIR SINE MIR 0 262 28 1813 243 111 59 chr1 60732274 60732381 -221461283 - L1ME3A LINE L1 -208 5945 5845 2356 61 0 7 chr1 60732381 60732676 -221460988 + AluY SINE Alu 1 293 -18 1813 243 111 59 chr1 60732676 60733837 -221459827 - L1ME3A LINE L1 -308 5845 4542 1256 214 16 47 chr1 60733837 60734159 -221459505 + AluJo SINE Alu 1 312 0 1813 243 111 59 chr1 60734159 60734764 -221458900 - L1ME3A LINE L1 -1611 4542 3970 3796 128 21 0 chr1 60734780 60735342 -221458322 - L1MC1 LINE L1 -5 6328 5755 2012 156 153 3 chr1 60735342 60735714 -221457950 - MSTA LTR MaLR 0 428 1 9990 133 18 35 chr1 60735714 60737319 -221456345 - MSTA-int LTR MaLR 0 1580 3 1771 137 146 12 chr1 60737321 60737657 -221456007 - MSTA LTR MaLR 0 428 48 1382 271 113 35 chr1 60737657 60739797 -221453867 - L1M4 LINE L1 -1643 4503 2110 355 311 95 73 chr1 60739797 60741117 -221452547 - L1ME3A LINE L1 -4178 2132 638 247 294 43 22 chr1 60741290 60741382 -221452282 + MIR SINE MIR 118 211 -51 241 339 92 0 chr1 60741424 60741533 -221452131 - MIR SINE MIR -41 221 103 222 298 71 24 chr1 60741993 60742077 -221451587 - L3 LINE CR1 -67 1510 1423 202 341 181 7 chr1 60742239 60742377 -221451287 + MIR SINE MIR 29 190 -72 404 219 49 161 chr1 60743007 60743231 -221450433 + MIR SINE MIR 44 242 -20 187 306 97 0 chr1 60743540 60743612 -221450052 + L2 LINE L2 3226 3304 -9 416 277 115 0 chr1 60744196 60744326 -221449338 - L2 LINE L2 -195 3077 2933 372 306 0 6 chr1 60744334 60744494 -221449170 + (TG)n Simple_repeat Simple_repeat 2 160 0 273 201 86 101 chr1 60745521 60745660 -221448004 - L2 LINE L2 0 3272 3136 587 284 57 16 chr1 60746873 60747067 -221446597 + MIR SINE MIR 31 232 -30 343 340 93 0 chr1 60747696 60747858 -221445806 - MIR3 SINE MIR -20 188 12 219 139 0 0 chr1 60748226 60748262 -221445402 + (TCCG)n Simple_repeat Simple_repeat 2 37 0 347 271 42 35 chr1 60748709 60748853 -221444811 + MIR SINE MIR 111 255 -7 328 295 21 0 chr1 60749359 60749454 -221444210 - L2 LINE L2 0 3313 3217 218 288 0 0 chr1 60749726 60749785 -221443879 - MIR SINE MIR -37 225 167 409 88 35 0 chr1 60749790 60749847 -221443817 + FRAM/FAM SINE Alu 30 88 -88 180 0 0 0 chr1 60750054 60750074 -221443590 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1979 106 35 0 chr1 60750075 60750359 -221443305 - AluSx SINE Alu -1 311 18 240 35 0 0 chr1 60751060 60751089 -221442575 + (T)n Simple_repeat Simple_repeat 1 29 0 229 313 16 0 chr1 60751404 60751468 -221442196 - MER91A DNA MER1_type -130 66 2 563 338 54 36 chr1 60751469 60751785 -221441879 - L3 LINE CR1 -34 1543 1149 336 48 0 0 chr1 60751785 60751827 -221441837 + (CA)n Simple_repeat Simple_repeat 2 43 0 563 338 54 36 chr1 60751827 60751992 -221441672 - L3 LINE CR1 -428 1149 988 208 270 244 60 chr1 60753128 60753447 -221440217 - L2 LINE L2 0 3272 2895 200 229 21 0 chr1 60756012 60756060 -221437604 + L3 LINE CR1 1429 1477 -100 247 236 79 56 chr1 60756256 60756345 -221437319 + MIR SINE MIR 80 170 -92 244 361 46 19 chr1 60756510 60756618 -221437046 - MIR SINE MIR -133 129 19 235 282 191 0 chr1 60758074 60758205 -221435459 + L2 LINE L2 2905 3060 -212 238 351 18 18 chr1 60758737 60758848 -221434816 + MIR3 SINE MIR 13 123 -85 186 355 37 56 chr1 60759288 60759395 -221434269 + L3 LINE CR1 1396 1500 -77 194 245 19 19 chr1 60759648 60759701 -221433963 + L2 LINE L2 3215 3267 -5 188 360 34 0 chr1 60759906 60759995 -221433669 - MIR SINE MIR -82 180 89 284 200 33 0 chr1 60760558 60760618 -221433046 + L2 LINE L2 3210 3271 -1 190 365 74 14 chr1 60761471 60761619 -221432045 - MIR SINE MIR -55 207 51 183 267 133 38 chr1 60762792 60762897 -221430767 + L2 LINE L2 2855 2969 -303 188 200 18 0 chr1 60763546 60763601 -221430063 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 489 258 30 36 chr1 60763789 60763823 -221429841 - MIR SINE MIR -84 178 145 1577 181 3 20 chr1 60763823 60764115 -221429549 - AluJo SINE Alu -14 298 12 489 258 30 36 chr1 60764115 60764247 -221429417 - MIR SINE MIR -117 145 13 196 313 24 0 chr1 60764762 60764845 -221428819 + MIR SINE MIR 61 145 -63 331 320 33 29 chr1 60765195 60765371 -221428293 - MIR SINE MIR -69 139 11 280 220 23 114 chr1 60765512 60765644 -221428020 + LTR16B LTR ERVL 107 226 -238 348 150 17 0 chr1 60765752 60765812 -221427852 + LTR16B LTR ERVL 402 462 -2 251 200 18 0 chr1 60765837 60765892 -221427772 - MIR SINE MIR -118 144 89 413 284 147 27 chr1 60766454 60766746 -221426918 + L2 LINE L2 2892 3218 -54 218 271 17 0 chr1 60766902 60766961 -221426703 - MIR SINE MIR -63 145 86 214 339 89 18 chr1 60767560 60767672 -221425992 - L3 LINE CR1 -3 1574 1455 249 320 41 16 chr1 60767758 60767880 -221425784 - MIR3 SINE MIR -41 167 43 221 309 171 0 chr1 60767924 60768047 -221425617 - MIR SINE MIR -3 259 116 311 287 69 10 chr1 60768305 60768474 -221425190 - MIR SINE MIR -4 258 15 190 146 24 0 chr1 60768514 60768555 -221425109 - L2 LINE L2 -22 3250 3209 181 297 174 7 chr1 60769321 60769459 -221424205 + MIR SINE MIR 32 192 -70 456 309 48 6 chr1 60769876 60770041 -221423623 + MIR SINE MIR 31 202 -60 551 263 45 94 chr1 60770172 60770503 -221423161 + L2 LINE L2 2951 3265 -7 584 291 57 17 chr1 60770578 60770753 -221422911 - MIR3 SINE MIR -6 202 21 327 311 39 0 chr1 60771338 60771441 -221422223 + L1ME4a LINE L1 6003 6109 -12 182 237 0 0 chr1 60771605 60771643 -221422021 + MIR3 SINE MIR 157 194 -14 4374 175 22 4 chr1 60772204 60773141 -221420523 - L1MB8 LINE L1 0 6178 5227 648 242 45 50 chr1 60773166 60773364 -221420300 - MIR SINE MIR 0 262 66 2315 82 16 0 chr1 60774287 60774592 -221419072 - AluSx SINE Alu -2 310 1 216 162 0 0 chr1 60774616 60774653 -221419011 - MIR SINE MIR -16 246 210 185 264 57 0 chr1 60774743 60774796 -221418868 + MIR SINE MIR 127 182 -80 244 308 77 46 chr1 60776324 60776454 -221417210 - MIR SINE MIR -65 197 64 246 409 45 0 chr1 60776647 60776757 -221416907 - L3 LINE CR1 -13 1564 1450 187 169 0 51 chr1 60776805 60776864 -221416800 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 867 330 72 42 chr1 60776865 60777387 -221416277 - L2 LINE L2 -7 3306 2779 304 335 58 35 chr1 60777622 60777795 -221415869 - MIR SINE MIR -56 206 30 257 329 13 0 chr1 60777920 60777999 -221415665 - MIR SINE MIR -82 126 47 1044 98 22 71 chr1 60778692 60778722 -221414942 + L1MA2 LINE L1 6130 6160 -144 2111 89 0 0 chr1 60778722 60779004 -221414660 + AluY SINE Alu 30 311 0 1044 98 22 71 chr1 60779004 60779157 -221414507 + L1MA2 LINE L1 6160 6304 0 488 252 10 28 chr1 60779173 60779750 -221413914 + (TG)n Simple_repeat Simple_repeat 1 566 0 460 266 0 43 chr1 60779829 60780017 -221413647 + (TG)n Simple_repeat Simple_repeat 1 180 0 253 242 0 31 chr1 60780038 60780199 -221413465 + (TG)n Simple_repeat Simple_repeat 1 156 0 367 319 0 32 chr1 60780214 60780399 -221413265 + (TG)n Simple_repeat Simple_repeat 2 180 0 341 85 64 11 chr1 60781159 60781253 -221412411 + (CA)n Simple_repeat Simple_repeat 1 99 0 211 287 199 0 chr1 60781657 60781793 -221411871 - MIR SINE MIR -20 242 80 387 285 119 7 chr1 60782992 60783143 -221410521 + MIR SINE MIR 21 188 -74 260 329 13 0 chr1 60783252 60783331 -221410333 + MIR3 SINE MIR 109 188 -20 193 293 50 40 chr1 60783357 60783456 -221410208 + MIR3 SINE MIR 89 188 -20 280 354 37 24 chr1 60783604 60783768 -221409896 + MIR SINE MIR 46 211 -51 498 184 51 63 chr1 60784131 60784289 -221409375 + MER20 DNA MER1_type 1 156 -63 242 335 103 28 chr1 60784941 60785123 -221408541 + MIR SINE MIR 9 201 -61 384 297 101 0 chr1 60785618 60785756 -221407908 - MIR SINE MIR -83 179 28 192 332 172 37 chr1 60786708 60786952 -221406712 - L2 LINE L2 -474 2840 2564 221 387 87 7 chr1 60787688 60787838 -221405826 + L2 LINE L2 2898 3059 -213 251 312 100 41 chr1 60788467 60788637 -221405027 - MIR SINE MIR -1 261 82 264 354 117 16 chr1 60789520 60789777 -221403887 - L2 LINE L2 -172 3100 2818 198 286 0 18 chr1 60789992 60790048 -221403616 - L2 LINE L2 -5 3267 3213 315 325 124 39 chr1 60790182 60790616 -221403048 + L2 LINE L2 2420 2890 -424 599 265 55 30 chr1 60791108 60791308 -221402356 - MIR SINE MIR -48 214 10 308 307 186 0 chr1 60792157 60792297 -221401367 + MIR SINE MIR 86 251 -11 204 254 199 55 chr1 60792986 60793182 -221400482 - MIR3 SINE MIR -9 253 5 201 159 0 0 chr1 60793859 60793903 -221399761 + (CA)n Simple_repeat Simple_repeat 2 45 0 720 271 0 18 chr1 60794023 60794429 -221399235 + G-rich Low_complexity Low_complexity 1 398 0 1149 108 0 21 chr1 60794430 60794856 -221398808 + (G)n Simple_repeat Simple_repeat 1 417 0 328 238 119 0 chr1 60794861 60794945 -221398719 - MER58A DNA MER1_type -13 94 1 251 275 174 9 chr1 60794998 60795107 -221398557 + MIR SINE MIR 124 250 -12 282 315 74 0 chr1 60795565 60795673 -221397991 - MIR3 SINE MIR -16 192 77 676 245 39 49 chr1 60795870 60796074 -221397590 + MIR SINE MIR 47 248 -14 195 311 113 28 chr1 60796368 60796474 -221397190 - MIR3 SINE MIR -87 121 7 396 306 77 35 chr1 60796959 60797129 -221396535 - L1ME4a LINE L1 -1 6120 5944 954 190 6 0 chr1 60797157 60797331 -221396333 - FRAM SINE Alu -5 171 1 294 252 361 2 chr1 60797370 60797536 -221396128 - MIR SINE MIR -1 261 38 1751 187 2 83 chr1 60797613 60797846 -221395818 - MLT1A2 LTR MaLR 0 374 186 1899 142 16 23 chr1 60797846 60798155 -221395509 - AluJo SINE Alu -5 307 1 1751 187 2 83 chr1 60798155 60798328 -221395336 - MLT1A2 LTR MaLR -188 186 1 639 233 210 23 chr1 60798405 60798624 -221395040 + MIR SINE MIR 3 262 0 263 246 36 87 chr1 60798644 60798782 -221394882 + MLT1K LTR MaLR 140 270 -318 233 205 138 76 chr1 60799056 60799159 -221394505 - L1MEc LINE L1 -4081 2315 2220 2301 95 10 0 chr1 60799159 60799463 -221394201 - AluSg SINE Alu -3 307 1 233 205 138 76 chr1 60799463 60799583 -221394081 - L1MEc LINE L1 -4176 2220 2078 1925 143 49 54 chr1 60799604 60799954 -221393710 - MER7A DNA MER2_type 0 346 1 1046 284 89 48 chr1 60800188 60800983 -221392681 - L1MEc LINE L1 -4638 1758 918 1851 179 0 17 chr1 60800983 60801284 -221392380 - AluJb SINE Alu -16 296 1 1046 284 89 48 chr1 60801284 60801423 -221392241 - L1MEc LINE L1 -5478 918 786 1739 198 7 0 chr1 60801718 60802026 -221391638 - AluJo SINE Alu -2 310 1 2416 81 0 3 chr1 60802139 60802434 -221391230 - AluY SINE Alu -17 294 1 331 294 22 121 chr1 60802445 60802715 -221390949 - L1MEc LINE L1 -5707 498 264 2260 95 0 0 chr1 60802715 60802999 -221390665 - AluSx SINE Alu -15 297 14 331 294 22 121 chr1 60802999 60803051 -221390613 - L1MEc LINE L1 -5941 264 208 315 339 43 0 chr1 60803095 60803328 -221390336 - L1ME4a LINE L1 -281 5840 5598 325 274 0 9 chr1 60803329 60803442 -221390222 + L1ME1 LINE L1 5712 5823 -298 944 266 175 35 chr1 60803965 60804548 -221389116 - L2 LINE L2 0 3313 2637 276 253 8 95 chr1 60804591 60804717 -221388947 + L1ME1 LINE L1 6028 6112 -54 192 255 0 0 chr1 60804723 60804825 -221388839 + (CA)n Simple_repeat Simple_repeat 1 102 0 34 79 0 0 chr1 60804852 60804928 -221388736 + AT_rich Low_complexity Low_complexity 1 76 0 218 31 0 31 chr1 60805611 60805643 -221388021 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2114 125 3 3 chr1 60805645 60805942 -221387722 - AluSx SINE Alu -15 297 1 1324 250 93 24 chr1 60807032 60807706 -221385958 + MER20B DNA MER1_type 1 751 -32 183 302 66 47 chr1 60807745 60807851 -221385813 - MIR3 SINE MIR -92 116 9 345 293 53 40 chr1 60808747 60808897 -221384767 + MIR3 SINE MIR 18 169 -39 185 271 86 0 chr1 60809119 60809189 -221384475 - L2 LINE L2 -49 3223 3148 474 244 121 25 chr1 60809357 60809558 -221384106 - MIR SINE MIR -29 233 13 434 257 108 20 chr1 60809669 60809817 -221383847 - MIR3 SINE MIR -14 194 34 322 288 91 23 chr1 60810668 60810800 -221382864 + MIR3 SINE MIR 16 156 -52 809 266 23 18 chr1 60810906 60811124 -221382540 + MIR SINE MIR 16 234 -28 21 0 0 0 chr1 60811588 60811609 -221382055 + AT_rich Low_complexity Low_complexity 1 21 0 1803 98 106 4 chr1 60811714 60811978 -221381686 - AluSc SINE Alu -18 291 1 2461 84 3 3 chr1 60812042 60812350 -221381314 + AluSx SINE Alu 3 310 -2 1201 214 146 42 chr1 60812366 60812792 -221380872 + MLT1D LTR MaLR 28 497 -8 4034 225 66 29 chr1 60813074 60814441 -221379223 + L1ME LINE L1 3750 5166 -980 1188 127 0 18 chr1 60814441 60814607 -221379057 - FRAM SINE Alu -16 160 1 867 168 116 25 chr1 60814607 60814868 -221378796 + L1ME LINE L1 5154 5431 -735 199 305 84 52 chr1 60815075 60815229 -221378435 - L2 LINE L2 -215 3057 2899 200 204 0 23 chr1 60815606 60815650 -221378014 - MIR SINE MIR -112 150 108 383 326 155 6 chr1 60816420 60816601 -221377063 + L2 LINE L2 3106 3313 0 342 210 176 34 chr1 60817681 60817800 -221375864 - MIR SINE MIR -1 261 126 194 305 76 0 chr1 60818422 60818527 -221375137 - MIR SINE MIR -64 198 86 266 261 87 11 chr1 60818814 60818906 -221374758 + MER5B DNA MER1_type 1 99 -79 243 291 12 12 chr1 60818933 60819019 -221374645 + (CA)n Simple_repeat Simple_repeat 1 86 0 353 254 96 28 chr1 60819028 60819205 -221374459 + L2 LINE L2 2871 3059 -213 218 261 85 55 chr1 60819572 60819737 -221373927 + L2 LINE L2 3076 3245 -68 1441 282 61 40 chr1 60819860 60820379 -221373285 - L1ME4a LINE L1 -70 6051 5511 2369 98 7 3 chr1 60820379 60820685 -221372979 - AluSx SINE Alu -5 307 1 1441 282 61 40 chr1 60820685 60820885 -221372779 - L1ME4a LINE L1 -610 5511 5317 533 340 72 27 chr1 60820886 60821260 -221372404 - L1ME4a LINE L1 -849 5297 4907 1553 237 73 40 chr1 60821365 60821842 -221371822 - L2 LINE L2 -2 3311 2819 420 229 72 15 chr1 60821933 60822272 -221371392 + (TGAG)n Simple_repeat Simple_repeat 1 358 0 277 183 95 47 chr1 60822441 60822610 -221371054 + (TGAG)n Simple_repeat Simple_repeat 4 180 0 242 232 93 13 chr1 60822756 60822907 -221370757 + (TGAG)n Simple_repeat Simple_repeat 4 166 0 206 250 74 9 chr1 60823086 60823194 -221370470 + (TGAG)n Simple_repeat Simple_repeat 4 118 0 329 214 71 30 chr1 60823208 60823376 -221370288 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 588 206 161 0 chr1 60823552 60823732 -221369932 - MER20 DNA MER1_type -9 210 2 1783 271 182 18 chr1 60823732 60824519 -221369145 - L2 LINE L2 -611 2703 1788 528 218 15 94 chr1 60824885 60825087 -221368577 - L2 LINE L2 -1558 1756 1571 2400 293 69 29 chr1 60825112 60826505 -221367159 + L1ME3A LINE L1 2722 4169 -1977 210 312 112 28 chr1 60827090 60827305 -221366359 - L2 LINE L2 -158 3114 2882 629 263 69 6 chr1 60828896 60829071 -221364593 + MIR SINE MIR 2 187 -75 204 309 128 13 chr1 60829794 60829943 -221363721 + MIR SINE MIR 96 261 -1 190 172 78 31 chr1 60830326 60830390 -221363274 + MIR3 SINE MIR 109 175 -33 486 269 170 8 chr1 60830463 60830676 -221362988 - MIR SINE MIR -12 250 2 559 152 61 0 chr1 60831115 60831214 -221362450 + MIR SINE MIR 87 191 -71 420 292 33 8 chr1 60831351 60831471 -221362193 + MIR SINE MIR 30 152 -110 229 298 0 0 chr1 60832429 60832486 -221361178 + L2 LINE L2 2992 3048 -224 549 244 268 30 chr1 60832491 60832827 -221360837 + L2 LINE L2 2840 3255 -17 422 285 24 8 chr1 60833295 60833418 -221360246 + MIR SINE MIR 20 144 -64 347 221 13 0 chr1 60833496 60833573 -221360091 + MIR SINE MIR 67 144 -118 522 227 41 78 chr1 60834253 60834495 -221359169 - L2 LINE L2 -6 3307 3075 345 313 61 61 chr1 60834564 60834794 -221358870 - L2 LINE L2 -421 2893 2664 * 522 279 50 19 chr1 60834787 60834948 -221358716 + L2 LINE L2 3147 3312 -1 1010 312 41 28 chr1 60834954 60835390 -221358274 + L2 LINE L2 2870 3311 -2 396 273 128 16 chr1 60835537 60835724 -221357940 - MIR SINE MIR -32 230 23 292 319 28 50 chr1 60835776 60835917 -221357747 - L2 LINE L2 -6 3307 3170 22 56 0 0 chr1 60836038 60836074 -221357590 + AT_rich Low_complexity Low_complexity 1 36 0 277 269 114 24 chr1 60836122 60836412 -221357252 + L1ME3A LINE L1 4155 4470 -1676 2110 158 0 0 chr1 60836412 60836716 -221356948 + AluSx SINE Alu 1 304 -8 749 49 6 68 chr1 60836738 60836900 -221356764 + (GGAA)n Simple_repeat Simple_repeat 1 152 0 2707 235 80 64 chr1 60836908 60837776 -221355888 + L1ME3A LINE L1 4475 5383 -787 2083 140 3 10 chr1 60837776 60838083 -221355581 + AluJb SINE Alu 3 307 -5 2707 235 80 64 chr1 60838083 60838854 -221354810 + L1ME3A LINE L1 5383 6140 -30 4189 126 60 3 chr1 60838855 60839559 -221354105 + Tigger2 DNA MER2_type 1 744 -1974 1559 119 24 8 chr1 60839622 60839875 -221353789 + Tigger2 DNA MER2_type 2462 2718 0 2257 116 0 0 chr1 60840192 60840493 -221353171 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr1 60840969 60840991 -221352673 + AT_rich Low_complexity Low_complexity 1 22 0 2065 144 7 3 chr1 60841478 60841777 -221351887 + AluJo SINE Alu 1 300 -12 201 222 22 67 chr1 60841929 60842019 -221351645 + MIR3 SINE MIR 2 87 -121 * 205 306 259 0 chr1 60842011 60842119 -221351545 + MIR SINE MIR 119 254 -8 374 256 122 51 chr1 60842391 60842547 -221351117 + L2 LINE L2 3106 3272 0 307 311 82 24 chr1 60842714 60842865 -221350799 + MIR SINE MIR 37 192 -58 449 221 12 0 chr1 60844059 60844145 -221349519 - L2 LINE L2 -9 3304 3218 1133 302 205 7 chr1 60844242 60844948 -221348716 - L2 LINE L2 -917 2397 1552 218 218 0 55 chr1 60844996 60845051 -221348613 - MIR SINE MIR -114 148 97 293 278 83 0 chr1 60845121 60845193 -221348471 + MER5A DNA MER1_type 112 189 0 628 195 145 25 chr1 60845291 60845450 -221348214 + MIR SINE MIR 66 243 -19 281 297 99 10 chr1 60845554 60845655 -221348009 + L2 LINE L2 3142 3251 -21 378 274 94 7 chr1 60845743 60845894 -221347770 - MIR SINE MIR -65 143 30 1012 232 111 42 chr1 60847261 60847757 -221345907 + MLT1H1 LTR MaLR 8 537 -18 421 332 162 16 chr1 60847914 60848297 -221345367 + L2 LINE L2 2833 3271 -1 220 196 59 0 chr1 60848437 60848488 -221345176 - L2 LINE L2 -189 3083 3030 320 289 21 21 chr1 60849213 60849310 -221344354 + L3 LINE CR1 1392 1488 -89 * 633 273 93 6 chr1 60849296 60849479 -221344185 - MIR3 SINE MIR -3 205 7 576 275 72 12 chr1 60849571 60849783 -221343881 + MIR SINE MIR 32 255 -7 376 266 43 7 chr1 60849827 60849966 -221343698 + MIR3 SINE MIR 59 202 -6 194 283 0 0 chr1 60850227 60850273 -221343391 - L2 LINE L2 -18 3295 3250 188 270 79 16 chr1 60850339 60850402 -221343262 - MIR SINE MIR -162 100 34 296 301 29 10 chr1 60851106 60851209 -221342455 - L2 LINE L2 -188 3084 2980 230 213 160 0 chr1 60851894 60851969 -221341695 + L3 LINE CR1 1423 1509 -68 207 200 0 0 chr1 60852335 60852375 -221341289 + (ATG)n Simple_repeat Simple_repeat 3 42 0 688 273 100 18 chr1 60852689 60852909 -221340755 - MIR SINE MIR 0 262 25 191 350 10 48 chr1 60853115 60853218 -221340446 + L2 LINE L2 3173 3271 -1 228 306 0 0 chr1 60853279 60853341 -221340323 - MIR SINE MIR -20 242 181 1567 227 164 114 chr1 60854421 60855387 -221338277 - L2 LINE L2 -5 3308 2110 1020 129 0 0 chr1 60855387 60855534 -221338130 + FRAM SINE Alu 1 146 -30 1567 227 164 114 chr1 60855534 60855853 -221337811 - L2 LINE L2 -1203 2110 1808 629 284 20 44 chr1 60855853 60856057 -221337607 - MIR SINE MIR -63 199 1 229 231 109 95 chr1 60856085 60856232 -221337432 - MIR SINE MIR -14 248 100 204 356 40 0 chr1 60856382 60856483 -221337181 + L2 LINE L2 2771 2875 -439 233 295 119 7 chr1 60857241 60857394 -221336270 - MIR3 SINE MIR -75 133 15 861 215 183 32 chr1 60857485 60857797 -221335867 - MLT1A1 LTR MaLR -6 359 1 225 374 16 0 chr1 60857802 60857925 -221335739 + L2 LINE L2 2742 2866 -448 342 181 43 43 chr1 60858017 60858111 -221335553 - MER20 DNA MER1_type -2 217 124 1601 163 100 51 chr1 60858140 60858253 -221335411 + MER7A DNA MER2_type 1 107 -2931 2084 130 3 0 chr1 60858253 60858546 -221335118 - AluSx SINE Alu -18 294 1 1601 163 100 51 chr1 60858546 60858763 -221334901 + MER7A DNA MER2_type 107 345 -1 192 31 0 31 chr1 60858919 60858951 -221334713 - MIR SINE MIR -124 138 108 215 288 30 0 chr1 60859291 60859357 -221334307 + GA-rich Low_complexity Low_complexity 5 72 0 361 274 94 0 chr1 60859429 60859535 -221334129 - L2 LINE L2 -2 3270 3155 238 325 118 30 chr1 60859571 60859740 -221333924 + L2 LINE L2 3089 3272 0 244 232 0 0 chr1 60860462 60860518 -221333146 + L3 LINE CR1 789 844 -733 288 311 170 0 chr1 60860597 60860732 -221332932 + L2 LINE L2 3108 3265 -7 249 333 0 61 chr1 60860732 60860864 -221332800 + L1ME LINE L1 5692 5815 -306 285 333 161 19 chr1 60861082 60861349 -221332315 + L3 LINE CR1 844 1148 -429 407 274 242 11 chr1 60861404 60861594 -221332070 + L3 LINE CR1 1301 1534 -43 514 275 230 12 chr1 60861602 60861798 -221331866 - MIR3 SINE MIR -13 249 12 23 0 0 0 chr1 60861798 60861821 -221331843 + AT_rich Low_complexity Low_complexity 1 23 0 194 296 19 0 chr1 60862175 60862229 -221331435 + MIR SINE MIR 89 143 -65 271 308 35 106 chr1 60862272 60862499 -221331165 + L2 LINE L2 2953 3163 -109 219 320 82 21 chr1 60863279 60863376 -221330288 + MIR3 SINE MIR 5 107 -101 253 316 145 0 chr1 60863453 60863570 -221330094 + L2 LINE L2 3139 3272 0 202 282 64 51 chr1 60863640 60863718 -221329946 + L2 LINE L2 3194 3272 0 2451 80 0 0 chr1 60863775 60864087 -221329577 + AluSx SINE Alu 1 312 0 813 238 44 0 chr1 60864144 60864325 -221329339 + MER5A DNA MER1_type 1 189 0 311 207 0 0 chr1 60864344 60864402 -221329262 + MIR SINE MIR 97 154 -108 298 296 41 0 chr1 60864704 60864802 -221328862 - MIR SINE MIR -115 147 46 203 177 210 0 chr1 60865195 60865257 -221328407 - MIR SINE MIR -109 153 79 184 337 42 32 chr1 60865312 60865407 -221328257 + MIR SINE MIR 37 132 -76 255 305 95 11 chr1 60865596 60865691 -221327973 - MIR SINE MIR -86 122 20 210 298 26 70 chr1 60867185 60867299 -221326365 - MIR SINE MIR -115 147 39 338 300 68 8 chr1 60867735 60867921 -221325743 + MIR SINE MIR 55 254 -8 216 240 0 0 chr1 60868195 60868245 -221325419 + G-rich Low_complexity Low_complexity 1 50 0 295 248 218 0 chr1 60868271 60868372 -221325292 - MIR3 SINE MIR -53 155 33 261 315 22 0 chr1 60868677 60868769 -221324895 + MIR3 SINE MIR 111 204 -4 384 163 40 32 chr1 60870312 60870421 -221323243 + MIR SINE MIR 58 164 -67 180 0 0 0 chr1 60870595 60870615 -221323049 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 257 269 0 134 chr1 60872134 60872283 -221321381 - L2 LINE L2 -1 3271 3143 238 341 59 0 chr1 60872615 60872700 -221320964 - MIR3 SINE MIR -3 205 116 375 332 68 29 chr1 60872709 60873016 -221320648 - L2 LINE L2 -73 3199 2881 751 287 72 13 chr1 60873257 60873494 -221320170 + MIR SINE MIR 4 254 -8 477 294 16 49 chr1 60873608 60873792 -221319872 + L3 LINE CR1 1397 1574 -3 197 274 81 0 chr1 60874146 60874208 -221319456 + L2 LINE L2 3205 3271 -1 288 294 111 22 chr1 60874867 60875047 -221318617 - L2 LINE L2 -172 3100 2905 205 330 71 18 chr1 60875988 60876100 -221317564 + L2 LINE L2 3137 3254 -18 213 39 0 0 chr1 60876100 60876126 -221317538 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 377 348 141 16 chr1 60876372 60876769 -221316895 - L2 LINE L2 -30 3242 2782 378 234 0 11 chr1 60876909 60877003 -221316661 - MIR SINE MIR -76 132 40 257 348 45 27 chr1 60878316 60878540 -221315124 + L2 LINE L2 2949 3176 -96 340 158 18 0 chr1 60878637 60878694 -221314970 - U7 snRNA snRNA -4 59 2 640 271 84 33 chr1 60880721 60880935 -221312729 - MIR SINE MIR -36 226 2 819 142 0 8 chr1 60880956 60881083 -221312581 + FLAM_C SINE Alu 1 126 -17 221 316 0 0 chr1 60882166 60882223 -221311441 + L2 LINE L2 2719 2775 -539 269 268 98 73 chr1 60882324 60882447 -221311217 - MIR SINE MIR -4 258 133 517 179 131 35 chr1 60883033 60883178 -221310486 - MIR SINE MIR -57 205 47 481 293 92 50 chr1 60883822 60884160 -221309504 - L2 LINE L2 -6 3266 2915 232 270 99 12 chr1 60884462 60884543 -221309121 + MIR SINE MIR 21 107 -103 418 157 0 14 chr1 60884763 60884833 -221308831 + FAM SINE Alu 93 161 -24 185 343 90 0 chr1 60886517 60886651 -221307013 + L2 LINE L2 2828 2973 -299 199 269 51 39 chr1 60887130 60887208 -221306456 + L2 LINE L2 2728 2806 -508 844 229 14 33 chr1 60887562 60887772 -221305892 - MIR SINE MIR -6 256 51 327 274 137 0 chr1 60888705 60888822 -221304842 - MIR SINE MIR -56 206 74 2203 123 3 0 chr1 60888937 60889246 -221304418 - AluSx SINE Alu -2 310 1 1572 184 22 22 chr1 60889265 60889296 -221304368 - MLT1A2 LTR MaLR -2 372 342 1267 143 89 36 chr1 60889296 60889520 -221304144 - MER46A DNA MER2_type 0 236 1 1572 184 22 22 chr1 60889520 60889846 -221303818 - MLT1A2 LTR MaLR -31 343 15 283 330 39 0 chr1 60889849 60889952 -221303712 - MIR SINE MIR -139 123 17 3750 159 21 10 chr1 60890501 60891229 -221302435 - L1MB7 LINE L1 -20 6164 5429 195 283 0 38 chr1 60891344 60891397 -221302267 - L2 LINE L2 -12 3260 3210 * 565 216 101 22 chr1 60891389 60891528 -221302136 - MIR SINE MIR -101 161 12 2148 138 0 0 chr1 60891593 60891905 -221301759 + AluSx SINE Alu 1 312 0 503 292 8 0 chr1 60892158 60892288 -221301376 + MIR SINE MIR 124 254 -8 265 278 100 22 chr1 60892891 60892981 -221300683 + MIR SINE MIR 45 141 -67 656 248 13 7 chr1 60893017 60893166 -221300498 - MIR SINE MIR -6 256 107 2009 150 0 7 chr1 60893237 60893544 -221300120 + AluJo SINE Alu 1 305 -7 414 229 76 0 chr1 60894203 60894308 -221299356 - MIR SINE MIR -95 167 55 222 150 0 0 chr1 60894435 60894475 -221299189 + (GGGGA)n Simple_repeat Simple_repeat 2 41 0 235 224 0 0 chr1 60894832 60894881 -221298783 - MIR SINE MIR -59 149 101 188 332 168 36 chr1 60895014 60895210 -221298454 - MIR SINE MIR -25 237 16 504 276 62 36 chr1 60895958 60896150 -221297514 - MIR SINE MIR -64 198 2 254 274 66 47 chr1 60896163 60896269 -221297395 + MIR SINE MIR 152 259 -3 199 227 118 55 chr1 60896667 60896777 -221296887 - MER5A DNA MER1_type -48 141 25 2181 119 0 0 chr1 60897252 60897554 -221296110 + AluSg SINE Alu 1 302 -8 882 142 0 0 chr1 60897608 60897735 -221295929 - FLAM_C SINE Alu -16 127 1 2274 88 0 10 chr1 60897885 60898191 -221295473 + AluY SINE Alu 3 305 -6 238 292 46 0 chr1 60898216 60898281 -221295383 + MIR SINE MIR 119 186 -76 257 299 66 44 chr1 60898352 60898489 -221295175 - MIR3 SINE MIR -5 203 64 331 178 151 0 chr1 60898794 60898867 -221294797 + L2 LINE L2 3129 3212 -101 280 235 200 9 chr1 60898887 60899002 -221294662 + L2 LINE L2 3177 3313 0 192 241 93 0 chr1 60899047 60899101 -221294563 - MIR3 SINE MIR -11 197 139 454 289 27 39 chr1 60899137 60899288 -221294376 + L1MC4 LINE L1 1953 6983 -1339 431 289 0 0 chr1 60899224 60899314 -221294350 - L1MC4 LINE L1 -1339 6703 6614 * 336 320 10 10 chr1 60899284 60899381 -221294283 - L1MCa LINE L1 -4363 2063 1967 * 428 267 112 0 chr1 60900287 60900403 -221293261 - MIR SINE MIR -57 205 77 189 220 130 80 chr1 60901046 60901146 -221292518 - MIR3 SINE MIR -20 188 84 525 139 0 0 chr1 60901228 60901314 -221292350 + L1MA6 LINE L1 6215 6300 0 231 36 0 0 chr1 60901341 60901369 -221292295 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 397 314 80 0 chr1 60901438 60901575 -221292089 + MIR SINE MIR 8 155 -107 497 347 5 16 chr1 60901682 60901872 -221291792 + MIR3 SINE MIR 21 208 0 252 289 44 26 chr1 60902020 60902123 -221291541 + L2 LINE L2 2858 2962 -310 620 227 167 0 chr1 60902123 60902273 -221291391 - MER5A DNA MER1_type 0 189 15 307 170 0 0 chr1 60903021 60903074 -221290590 + AluJb SINE Alu 71 123 -179 289 125 0 0 chr1 60903067 60903107 -221290557 + FLAM_A SINE Alu 77 116 -17 * 315 130 0 0 chr1 60903106 60903152 -221290512 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903145 60903185 -221290479 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903184 60903230 -221290434 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903223 60903263 -221290401 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903262 60903308 -221290356 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903301 60903341 -221290323 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903340 60903386 -221290278 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903379 60903419 -221290245 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903418 60903464 -221290200 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903457 60903497 -221290167 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903496 60903542 -221290122 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903535 60903575 -221290089 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903574 60903620 -221290044 + AluJb SINE Alu 78 123 -179 289 125 0 0 chr1 60903613 60903653 -221290011 + AluJo/FLAM SINE Alu 78 117 -185 * 315 130 0 0 chr1 60903652 60903698 -221289966 + AluJb SINE Alu 78 123 -179 315 130 0 0 chr1 60903691 60903737 -221289927 + AluJb SINE Alu 78 123 -179 235 196 0 0 chr1 60903730 60903776 -221289888 + Alu SINE Alu 78 123 -179 * 273 128 0 0 chr1 60903769 60903808 -221289856 + AluJo/FLAM SINE Alu 78 116 -186 1328 149 0 41 chr1 60903808 60904029 -221289635 + AluJb SINE Alu 78 289 -23 343 246 152 29 chr1 60904460 60904598 -221289066 + MIR SINE MIR 96 250 -12 1627 178 46 16 chr1 60905171 60905474 -221288190 - AluJb SINE Alu 0 312 1 296 302 119 19 chr1 60905511 60905670 -221287994 - L2 LINE L2 -253 3060 2886 338 270 80 36 chr1 60905743 60905880 -221287784 - L2 LINE L2 -570 2744 2602 441 281 219 35 chr1 60905972 60906396 -221287268 - L2 LINE L2 -1326 1988 1487 393 272 171 31 chr1 60906449 60906677 -221286987 - L2 LINE L2 -2114 1200 941 899 270 112 45 chr1 60906680 60907366 -221286298 + HAL1 LINE L1 829 1560 -947 904 235 60 0 chr1 60907380 60907597 -221286067 + MIR SINE MIR 33 262 0 258 228 252 8 chr1 60907602 60907729 -221285935 + HAL1 LINE L1 1592 1749 -758 233 311 14 0 chr1 60907738 60907812 -221285852 + LTR67 LTR ERVL 4 78 -479 591 284 128 23 chr1 60907878 60908135 -221285529 + L2 LINE L2 3013 3296 -17 286 214 155 0 chr1 60908137 60908221 -221285443 + LTR67 LTR ERVL 92 188 -369 591 229 80 23 chr1 60908304 60908479 -221285185 + LTR67 LTR ERVL 330 514 -43 327 212 20 10 chr1 60908717 60908816 -221284848 + HAL1 LINE L1 2010 2109 -398 4212 148 46 11 chr1 60909978 60910153 -221283511 + L1MA4 LINE L1 5509 5676 -624 2276 124 0 0 chr1 60910153 60910460 -221283204 + AluSx SINE Alu 1 307 -5 4212 148 46 11 chr1 60910460 60911048 -221282616 + L1MA4 LINE L1 5676 6299 -1 1267 175 5 0 chr1 60911062 60911268 -221282396 + AluJb SINE Alu 87 293 -19 229 245 0 0 chr1 60911268 60911317 -221282347 + L2 LINE L2 3264 3312 -1 46 19 0 0 chr1 60911336 60911389 -221282275 + AT_rich Low_complexity Low_complexity 1 53 0 654 316 36 0 chr1 60911515 60911708 -221281956 + MIR SINE MIR 57 256 -6 564 274 73 17 chr1 60912440 60912619 -221281045 + L1ME4a LINE L1 5548 5736 -385 1949 122 38 3 chr1 60912818 60913105 -221280559 + AluJb SINE Alu 1 297 -15 2380 106 0 0 chr1 60913110 60913413 -221280251 + AluSx SINE Alu 1 303 -9 621 244 69 40 chr1 60913545 60913588 -221280076 + L1ME4a LINE L1 5839 5879 -242 2095 126 16 10 chr1 60913588 60913898 -221279766 - AluSx SINE Alu 0 312 1 621 244 69 40 chr1 60913898 60914128 -221279536 + L1ME4a LINE L1 5879 6120 -1 184 208 21 42 chr1 60914352 60914400 -221279264 + L2 LINE L2 3010 3056 -257 908 177 0 12 chr1 60914658 60914822 -221278842 + MER3 DNA MER1_type 2 163 -46 1480 173 8 8 chr1 60914886 60915135 -221278529 - AluJo SINE Alu -14 298 50 329 151 0 0 chr1 60915135 60915188 -221278476 - FRAM/FAM SINE Alu -99 67 15 285 352 19 0 chr1 60915956 60916064 -221277600 + L2 LINE L2 3146 3255 -17 394 294 24 40 chr1 60916618 60916744 -221276920 + MIR SINE MIR 67 190 -72 180 156 125 16 chr1 60917233 60917297 -221276367 + MIR3 SINE MIR 8 78 -130 518 289 119 10 chr1 60917330 60917524 -221276140 - MIR SINE MIR -23 239 25 292 259 98 77 chr1 60917485 60917628 -221276036 + MIR3 SINE MIR 38 183 -25 * 334 310 205 12 chr1 60918395 60918653 -221275011 - L2 LINE L2 -5 3267 2960 908 237 32 12 chr1 60918700 60918953 -221274711 - MIR SINE MIR -1 261 4 715 275 20 33 chr1 60921871 60922126 -221271538 + MIR SINE MIR 1 256 -6 334 258 45 22 chr1 60922258 60922347 -221271317 - MIR3 SINE MIR -6 202 112 22 0 0 0 chr1 60923161 60923183 -221270481 + AT_rich Low_complexity Low_complexity 1 22 0 271 318 91 53 chr1 60924825 60924957 -221268707 + MIR SINE MIR 21 157 -105 197 284 0 54 chr1 60925929 60926003 -221267661 - MIR SINE MIR -68 140 71 199 224 0 20 chr1 60926379 60926428 -221267236 + MIR SINE MIR 102 149 -59 364 264 11 33 chr1 60927683 60927774 -221265890 - MIR3 SINE MIR -32 176 88 243 79 0 0 chr1 60929530 60929568 -221264096 + (CCG)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr1 60929804 60929825 -221263839 + GC_rich Low_complexity Low_complexity 1 21 0 218 309 18 0 chr1 60930049 60930104 -221263560 - MIR SINE MIR -161 101 46 212 290 137 29 chr1 60930191 60930316 -221263348 - MER5A DNA MER1_type -50 128 2 188 250 36 0 chr1 60930454 60930510 -221263154 + MIR3 SINE MIR 101 158 -50 210 312 64 46 chr1 60930922 60931031 -221262633 - MIR3 SINE MIR -94 114 4 299 267 92 53 chr1 60931134 60931265 -221262399 + MIR3 SINE MIR 58 193 -15 2248 115 6 13 chr1 60931873 60932185 -221261479 - AluSg SINE Alu 0 310 1 413 330 118 49 chr1 60932412 60932734 -221260930 + L2 LINE L2 2317 2615 -657 1707 183 3 11 chr1 60932734 60933050 -221260614 + AluJo SINE Alu 1 314 0 413 330 118 49 chr1 60933050 60933567 -221260097 + L2 LINE L2 2615 3272 0 394 286 143 12 chr1 60933815 60933976 -221259688 - MIR SINE MIR -3 259 78 2410 161 26 49 chr1 60933991 60934278 -221259386 + L1MB5 LINE L1 4833 5125 -1057 1490 168 39 81 chr1 60934278 60934588 -221259076 - AluJb SINE Alu -10 302 6 2410 161 26 49 chr1 60934588 60934935 -221258729 + L1MB5 LINE L1 5125 5439 -743 869 160 8 0 chr1 60934935 60935066 -221258598 + FAM SINE Alu 32 163 -22 520 135 16 173 chr1 60935080 60935265 -221258399 + L1MB5 LINE L1 5411 5566 -608 948 94 8 8 chr1 60935265 60935393 -221258271 - AluSq/x SINE Alu -181 131 4 2788 143 54 25 chr1 60935395 60935659 -221258005 + L1MB5 LINE L1 5555 5810 -364 2478 94 0 0 chr1 60935659 60935967 -221257697 + AluSx SINE Alu 1 308 -4 2788 143 54 25 chr1 60935967 60936255 -221257409 + L1MB5 LINE L1 5810 6123 -51 846 151 0 0 chr1 60936256 60936427 -221257237 - FLAM_C SINE Alu 0 171 1 293 169 0 0 chr1 60936428 60936487 -221257177 + L1MB5 LINE L1 6115 6173 -1 2669 203 40 60 chr1 60936944 60937004 -221256660 + L1M4 LINE L1 3949 4009 -2137 209 56 0 28 chr1 60937004 60937040 -221256624 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2669 203 40 60 chr1 60937040 60937794 -221255870 + L1M4 LINE L1 4009 4747 -1399 807 172 26 20 chr1 60937795 60937946 -221255718 + AluJb SINE Alu 137 288 -24 320 175 0 0 chr1 60937951 60938008 -221255656 + L1M4 LINE L1 4739 4795 -1351 463 286 89 22 chr1 60938281 60938584 -221255080 + L2 LINE L2 2545 3269 -3 486 287 133 68 chr1 60938715 60938978 -221254686 - L2 LINE L2 0 3313 3006 2310 103 3 10 chr1 60938978 60939289 -221254375 + AluSg SINE Alu 1 309 -1 486 287 133 68 chr1 60939289 60939482 -221254182 - L2 LINE L2 -307 3006 2827 1737 189 0 16 chr1 60939560 60939944 -221253720 + AluJo SINE Alu 1 379 0 2143 150 0 3 chr1 60939945 60940258 -221253406 + AluJb SINE Alu 1 312 0 455 255 30 105 chr1 60940801 60941001 -221252663 - MIR SINE MIR -33 229 45 232 324 59 59 chr1 60941051 60941341 -221252323 + L2 LINE L2 2940 3229 -84 21 57 0 0 chr1 60941463 60941498 -221252166 + AT_rich Low_complexity Low_complexity 1 35 0 476 275 54 7 chr1 60941757 60941906 -221251758 - MIR3 SINE MIR -3 205 50 1346 284 32 26 chr1 60941927 60942423 -221251241 + MLT1J LTR MaLR 6 504 -7 1532 260 111 24 chr1 60942431 60943070 -221250594 + L2 LINE L2 2396 3131 -182 2041 127 26 36 chr1 60943070 60943378 -221250286 + AluJb SINE Alu 1 305 -7 1532 260 111 24 chr1 60943378 60943536 -221250128 + L2 LINE L2 3131 3274 -39 204 97 0 0 chr1 60943554 60943585 -221250079 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2381 103 0 0 chr1 60943929 60944239 -221249425 - AluSg SINE Alu 0 310 1 198 0 0 0 chr1 60944673 60944695 -221248969 + (A)n Simple_repeat Simple_repeat 1 22 0 439 301 129 14 chr1 60944823 60945032 -221248632 + MIR SINE MIR 29 261 -1 681 258 103 48 chr1 60945919 60946035 -221247629 + MER102a DNA MER1_type 1 109 -1308 1925 124 11 7 chr1 60946035 60946117 -221247547 - AluJb SINE Alu -19 293 213 210 37 0 0 chr1 60946117 60946144 -221247520 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 1925 124 11 7 chr1 60946144 60946343 -221247321 - AluJb SINE Alu -99 213 11 681 258 103 48 chr1 60946343 60946536 -221247128 + MER102a DNA MER1_type 109 327 -3 243 362 124 17 chr1 60946575 60946752 -221246912 - L2 LINE L2 -1 3271 3076 1145 270 59 21 chr1 60946776 60946892 -221246772 - L1M4 LINE L1 -3060 3086 2976 1936 147 44 3 chr1 60946892 60947185 -221246479 - AluSx SINE Alu -7 305 1 1145 270 59 21 chr1 60947185 60947579 -221246085 - L1M4 LINE L1 -3170 2976 2557 2312 106 0 10 chr1 60947593 60947895 -221245769 - AluSx SINE Alu -13 299 1 2169 228 85 20 chr1 60947935 60948581 -221245083 - L1ME3 LINE L1 -22 6123 5436 2403 109 19 27 chr1 60948581 60948948 -221244716 - THE1B LTR MaLR 0 364 1 11752 97 11 8 chr1 60948948 60950155 -221243509 - THE1B-int LTR MaLR 0 1580 365 2097 142 0 3 chr1 60950155 60950458 -221243206 + AluSx SINE Alu 1 302 -10 11752 97 11 8 chr1 60950458 60950825 -221242839 - THE1B-int LTR MaLR -1215 365 1 2106 131 25 33 chr1 60950825 60951192 -221242472 - THE1B LTR MaLR 0 364 1 346 238 115 0 chr1 60951192 60951314 -221242350 - L1ME3 LINE L1 -707 5440 5305 2469 68 0 10 chr1 60951374 60951681 -221241983 + AluY SINE Alu 1 304 -7 558 205 45 0 chr1 60951715 60951871 -221241793 - L1M4 LINE L1 -3733 2413 2251 507 271 124 24 chr1 60951892 60952071 -221241593 - L1ME3 LINE L1 -4715 1595 1435 1918 150 14 0 chr1 60952071 60952364 -221241300 + AluJb SINE Alu 1 297 -15 507 271 124 24 chr1 60952364 60952781 -221240883 - L1ME3 LINE L1 -4875 1435 939 394 339 80 21 chr1 60952907 60953146 -221240518 - L1ME3 LINE L1 -5291 828 576 808 126 14 206 chr1 60954409 60954521 -221239143 + MER5A DNA MER1_type 1 50 -139 1499 193 11 0 chr1 60954521 60954786 -221238878 + AluJb SINE Alu 1 268 -44 808 126 14 206 chr1 60954786 60954896 -221238768 + MER5A DNA MER1_type 50 180 -9 303 252 35 52 chr1 60954938 60955053 -221238611 + MER5A DNA MER1_type 56 168 -21 338 240 220 0 chr1 60955068 60955168 -221238496 + L2 LINE L2 3145 3266 -6 953 127 13 38 chr1 60959396 60959553 -221234111 + FRAM SINE Alu 1 153 -23 939 226 35 18 chr1 60959613 60959896 -221233768 + L1MA9 LINE L1 5987 6274 -38 316 252 0 140 chr1 60960222 60960329 -221233335 + MIR SINE MIR 16 107 -155 216 294 88 49 chr1 60960334 60960436 -221233228 - MIR SINE MIR -156 106 1 27 29 0 0 chr1 60960541 60960575 -221233089 + AT_rich Low_complexity Low_complexity 1 34 0 2059 123 0 0 chr1 60960652 60960971 -221232693 - AluSx SINE Alu 0 319 1 2224 113 0 0 chr1 60961019 60961319 -221232345 - AluSx SINE Alu -12 300 1 376 338 50 23 chr1 60961625 60961844 -221231820 + MIR SINE MIR 2 226 -36 707 226 25 0 chr1 60961847 60962006 -221231658 + MER3 DNA MER1_type 2 164 -45 28 0 0 0 chr1 60962424 60962452 -221231212 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 60962522 60962545 -221231119 + AT_rich Low_complexity Low_complexity 1 23 0 632 131 29 58 chr1 60962906 60963026 -221230638 + FLAM_C SINE Alu 1 118 -184 701 58 10 0 chr1 60963026 60963129 -221230535 + (CATAA)n Simple_repeat Simple_repeat 2 105 0 632 131 29 58 chr1 60963129 60963145 -221230519 + FLAM_C SINE Alu 118 133 -169 1010 270 111 20 chr1 60963675 60964134 -221229530 - HAL1 LINE L1 -1412 1095 595 728 249 266 14 chr1 60964198 60964563 -221229101 - HAL1 LINE L1 -2034 473 17 3934 173 17 46 chr1 60964824 60964971 -221228693 - Looper DNA T2_type 0 1558 1408 1764 180 6 19 chr1 60964971 60965287 -221228377 + AluJo SINE Alu 1 312 0 3934 173 17 46 chr1 60965287 60965613 -221228051 - Looper DNA T2_type -150 1408 1074 2367 107 0 7 chr1 60965613 60965923 -221227741 - AluSx SINE Alu -4 308 1 3934 173 17 46 chr1 60965923 60966320 -221227344 - Looper DNA T2_type -484 1074 713 2189 110 0 7 chr1 60966320 60966621 -221227043 - AluSx SINE Alu -13 299 1 3934 173 17 46 chr1 60966621 60966672 -221226992 - Looper DNA T2_type -845 713 662 1416 167 62 3 chr1 60966672 60966978 -221226686 + MER33 DNA MER1_type 1 324 0 1308 162 61 36 chr1 60966978 60967396 -221226268 - Looper DNA T2_type -889 669 158 1664 185 27 14 chr1 60967396 60967688 -221225976 - AluJo SINE Alu -16 296 1 1308 162 61 36 chr1 60967688 60967843 -221225821 - Looper DNA T2_type -1400 158 8 603 204 0 68 chr1 60967847 60968009 -221225655 - MER113 DNA MER1_type? -141 380 230 236 189 0 0 chr1 60968028 60968081 -221225583 + MER46C DNA MER2_type 14 66 -272 1385 161 80 15 chr1 60968087 60968361 -221225303 - AluJb SINE Alu -18 294 3 735 240 41 52 chr1 60968434 60968625 -221225039 + MER46C DNA MER2_type 73 262 -76 324 0 0 0 chr1 60968625 60968661 -221225003 + (CA)n Simple_repeat Simple_repeat 2 37 0 735 240 41 52 chr1 60968661 60968736 -221224928 + MER46C DNA MER2_type 262 336 -2 908 109 0 36 chr1 60968835 60968973 -221224691 + FLAM_C SINE Alu 1 133 0 1439 175 86 14 chr1 60969224 60969504 -221224160 + AluSg SINE Alu 1 300 0 491 234 39 45 chr1 60969542 60969696 -221223968 - MIR SINE MIR 0 262 110 230 200 0 0 chr1 60969753 60969803 -221223861 + HsTC2 DNA Tc2 1847 1896 -2 243 301 24 36 chr1 60969819 60969902 -221223762 - MIR SINE MIR -179 83 2 237 324 42 0 chr1 60969986 60970057 -221223607 + MIR SINE MIR 28 101 -161 2281 82 0 38 chr1 60970423 60970738 -221222926 - AluSq SINE Alu -10 303 1 209 241 101 0 chr1 60970787 60970866 -221222798 + L2 LINE L2 3161 3247 -66 705 123 8 23 chr1 60971081 60971211 -221222453 + L1MB3 LINE L1 6044 6171 -12 1731 182 20 7 chr1 60971218 60971520 -221222144 - AluJo SINE Alu -6 306 1 26 0 0 0 chr1 60971520 60971546 -221222118 + AT_rich Low_complexity Low_complexity 1 26 0 381 261 101 29 chr1 60972287 60972425 -221221239 - L2 LINE L2 -7 3306 3159 268 365 25 25 chr1 60972736 60972933 -221220731 - L2 LINE L2 -2193 1121 925 1846 190 97 0 chr1 60973002 60973445 -221220219 + Charlie4a DNA MER1_type 20 505 -3 1612 177 118 6 chr1 60973927 60974283 -221219381 + MSTD LTR MaLR 1 396 0 533 212 147 5 chr1 60974466 60974589 -221219075 - MER112 DNA MER1_type -48 212 108 285 29 0 0 chr1 60974589 60974623 -221219041 + (CA)n Simple_repeat Simple_repeat 2 35 0 533 212 147 5 chr1 60974623 60974683 -221218981 - MER112 DNA MER1_type -152 108 3 2100 97 0 45 chr1 60974736 60974875 -221218789 + AluSx SINE Alu 1 145 -167 2394 75 3 0 chr1 60974875 60975167 -221218497 + AluY SINE Alu 1 293 -18 2100 97 0 45 chr1 60975167 60975336 -221218328 + AluSx SINE Alu 145 295 -17 376 264 68 80 chr1 60975391 60975554 -221218110 + MIR SINE MIR 31 191 -71 1381 137 5 19 chr1 60975943 60976154 -221217510 - AluJb SINE Alu -18 294 87 1890 158 0 3 chr1 60976266 60976590 -221217074 - AluSx SINE Alu 0 323 1 1743 157 7 21 chr1 60977063 60977349 -221216315 - AluJo SINE Alu -19 293 12 1774 149 43 0 chr1 60977731 60978012 -221215652 + AluJb SINE Alu 1 293 -19 402 21 0 0 chr1 60978015 60978062 -221215602 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 238 215 280 43 chr1 60978134 60978320 -221215344 - L2 LINE L2 -71 3242 3013 1329 151 0 23 chr1 60978459 60978678 -221214986 + AluJo SINE Alu 86 299 -13 1550 157 47 74 chr1 60978684 60978797 -221214867 + AluJb SINE Alu 7 122 -190 2210 102 3 3 chr1 60978797 60979091 -221214573 - AluSq SINE Alu -19 294 1 1550 157 47 74 chr1 60979091 60979276 -221214388 + AluJb SINE Alu 122 297 -15 27 29 0 0 chr1 60979673 60979707 -221213957 + AT_rich Low_complexity Low_complexity 1 34 0 249 242 32 0 chr1 60979740 60979802 -221213862 + MIR SINE MIR 66 129 -79 2244 78 63 3 chr1 60979898 60980182 -221213482 + AluSq SINE Alu 1 301 -12 1760 158 4 0 chr1 60980186 60980445 -221213219 + AluSx SINE Alu 1 260 -52 2286 103 0 19 chr1 60980447 60980766 -221212898 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 60980766 60980789 -221212875 + AT_rich Low_complexity Low_complexity 1 23 0 2157 106 3 3 chr1 60980789 60981107 -221212557 + AluSx SINE Alu 1 318 0 1263 154 32 44 chr1 60981194 60981546 -221212118 - L1MA4A LINE L1 -23 6280 5871 1879 59 4 66 chr1 60981546 60981817 -221211847 + AluY SINE Alu 45 298 -13 1263 154 32 44 chr1 60981817 60981870 -221211794 - L1MA4A LINE L1 -432 5871 5819 671 201 83 13 chr1 60982095 60982299 -221211365 + MIR SINE MIR 41 259 -3 2372 76 0 0 chr1 60982305 60982606 -221211058 - AluY SINE Alu -10 301 1 21 0 0 0 chr1 60983900 60983921 -221209743 + AT_rich Low_complexity Low_complexity 1 21 0 1813 160 7 10 chr1 60983942 60984235 -221209429 - AluJo SINE Alu 0 312 21 1869 154 0 0 chr1 60984347 60984619 -221209045 - AluJo SINE Alu -19 293 22 3490 243 106 37 chr1 60984883 60984952 -221208712 + L2 LINE L2 1637 1700 -1613 1728 149 7 40 chr1 60984952 60985248 -221208416 + AluJo SINE Alu 1 286 -26 3490 243 106 37 chr1 60985248 60986553 -221207111 + L2 LINE L2 1700 3136 -177 299 194 104 0 chr1 60986604 60986671 -221206993 + MER104 DNA Tc2 56 129 -51 391 299 83 0 chr1 60986711 60986855 -221206809 + L2 LINE L2 3153 3308 -5 1959 169 10 0 chr1 60987983 60988291 -221205373 - AluJb SINE Alu -1 311 1 2012 128 3 3 chr1 60988497 60988831 -221204833 - AluSc SINE Alu 0 309 1 2226 143 0 0 chr1 60988911 60989219 -221204445 - AluSx SINE Alu -4 308 1 244 305 71 21 chr1 60989404 60989545 -221204119 + L2 LINE L2 2667 2814 -500 359 263 139 15 chr1 60989597 60989734 -221203930 + L2 LINE L2 3160 3313 0 702 283 25 43 chr1 60989874 60990150 -221203514 + MER102b DNA MER1_type 44 314 -27 278 141 0 19 chr1 60990499 60990560 -221203104 - L1MA9 LINE L1 -1 6290 6231 2292 75 38 0 chr1 60990697 60990989 -221202675 - AluSc SINE Alu -6 303 1 1992 104 52 0 chr1 60992124 60992393 -221201271 - AluSx SINE Alu -15 297 15 1544 194 3 41 chr1 60992749 60993042 -221200622 + AluJo SINE Alu 1 282 -30 308 324 159 28 chr1 60993255 60993431 -221200233 + MIR3 SINE MIR 3 201 -7 1804 173 0 3 chr1 60993448 60993731 -221199933 - AluJb SINE Alu -30 282 1 2443 71 0 0 chr1 60993938 60994235 -221199429 - AluY SINE Alu -14 297 1 21 0 0 0 chr1 60994394 60994415 -221199249 + AT_rich Low_complexity Low_complexity 1 21 0 233 356 64 55 chr1 60994630 60994832 -221198832 + L2 LINE L2 3022 3225 -47 2252 123 0 0 chr1 60994840 60995141 -221198523 - AluSx SINE Alu -11 301 1 269 315 268 17 chr1 60995178 60995413 -221198251 + L2 LINE L2 2979 3272 0 26 74 0 0 chr1 60995450 60995504 -221198160 + AT_rich Low_complexity Low_complexity 1 54 0 1424 166 3 73 chr1 60995550 60995839 -221197825 - AluJo SINE Alu -12 300 32 2657 14 0 0 chr1 60996157 60996450 -221197214 + AluY SINE Alu 1 293 -18 2159 119 10 10 chr1 60997329 60997639 -221196025 + AluSx SINE Alu 1 310 -2 351 314 33 35 chr1 60998708 60998942 -221194722 + MIR SINE MIR 32 262 0 1241 117 0 0 chr1 60999724 60999887 -221193777 - FRAM SINE Alu -20 156 1 1962 188 30 3 chr1 61000274 61000635 -221193029 + Tigger6a DNA MER2_type 1 371 -712 658 91 0 73 chr1 61000638 61000748 -221192916 + U6 snRNA snRNA 1 102 -5 536 181 0 39 chr1 61000774 61000901 -221192763 + Tigger6a DNA MER2_type 362 483 -600 893 154 0 0 chr1 61000987 61001117 -221192547 + FLAM_C SINE Alu 1 130 -3 15419 190 14 21 chr1 61001131 61004436 -221189228 + L1PB1 LINE L1 6 3331 -3536 2365 66 0 7 chr1 61004436 61004751 -221188913 + AluY SINE Alu 1 313 0 15419 190 14 21 chr1 61004751 61008008 -221185656 + L1PB1 LINE L1 3331 6867 0 2135 142 32 32 chr1 61008474 61008519 -221185145 - L1MB2 LINE L1 -2 6169 6125 2160 96 34 14 chr1 61008519 61008810 -221184854 + AluSx SINE Alu 1 297 -15 2135 142 32 32 chr1 61008810 61009166 -221184498 - L1MB2 LINE L1 -45 6126 5768 25 0 0 0 chr1 61009609 61009634 -221184030 + AT_rich Low_complexity Low_complexity 1 25 0 873 272 15 15 chr1 61009739 61010000 -221183664 - MIR SINE MIR 0 262 2 191 330 110 11 chr1 61010048 61010139 -221183525 + MIR SINE MIR 16 115 -93 904 103 135 13 chr1 61010216 61010310 -221183354 + MER30 DNA MER1_type 1 82 -148 195 42 0 0 chr1 61010310 61010334 -221183330 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2268 125 0 3 chr1 61010336 61010649 -221183015 + AluSx SINE Alu 1 312 0 904 103 135 13 chr1 61010649 61010707 -221182957 + MER30 DNA MER1_type 82 175 -55 1257 26 33 0 chr1 61010758 61010909 -221182755 + L1PA4 LINE L1 6000 6155 0 1961 155 16 3 chr1 61011066 61011370 -221182294 - AluSx SINE Alu -4 308 1 1772 157 10 32 chr1 61011516 61011829 -221181835 + AluSx SINE Alu 1 306 -6 232 277 0 31 chr1 61012163 61012228 -221181436 - MIR SINE MIR -6 256 194 222 235 15 15 chr1 61012328 61012396 -221181268 + T-rich Low_complexity Low_complexity 2 69 0 1251 121 0 0 chr1 61012541 61012707 -221180957 + AluSq SINE Alu 126 291 -22 31 0 0 0 chr1 61013034 61013065 -221180599 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 61013135 61013157 -221180507 + AT_rich Low_complexity Low_complexity 1 22 0 1587 161 76 3 chr1 61014337 61014628 -221179036 + AluJo SINE Alu 1 312 0 707 181 0 0 chr1 61014649 61014765 -221178899 - FLAM_C SINE Alu -26 117 2 1913 142 7 3 chr1 61015256 61015551 -221178113 + AluJb SINE Alu 1 296 -16 1885 107 85 0 chr1 61015558 61015830 -221177834 + AluSx SINE Alu 1 295 -17 949 177 6 0 chr1 61017646 61017804 -221175860 - FAM SINE Alu -16 159 1 21 0 0 0 chr1 61017922 61017943 -221175721 + AT_rich Low_complexity Low_complexity 1 21 0 318 161 32 16 chr1 61018876 61018938 -221174726 - MER31A LTR ERV1 -76 409 347 2403 89 0 7 chr1 61018942 61019276 -221174388 - AluSq SINE Alu 0 313 1 356 370 124 9 chr1 61019709 61020039 -221173625 + L2 LINE L2 2903 3270 -2 2126 131 0 0 chr1 61020235 61020532 -221173132 + AluSg SINE Alu 1 297 -13 2235 100 0 0 chr1 61020536 61020817 -221172847 + AluSx SINE Alu 1 281 -31 2409 81 0 3 chr1 61020943 61021239 -221172425 + AluSp SINE Alu 1 295 -18 29 21 0 21 chr1 61021287 61021304 -221172360 + AT_rich Low_complexity Low_complexity 1 17 -29 2314 83 0 14 chr1 61021304 61021594 -221172070 + AluY SINE Alu 1 286 -25 29 21 0 21 chr1 61021594 61021623 -221172041 + AT_rich Low_complexity Low_complexity 17 46 0 24 32 0 0 chr1 61021722 61021753 -221171911 + AT_rich Low_complexity Low_complexity 1 31 0 2371 75 14 0 chr1 61021761 61022054 -221171610 + AluSc SINE Alu 1 297 -12 1491 135 71 0 chr1 61022393 61022660 -221171004 - L1MB3 LINE L1 -1 6182 5897 1398 162 17 4 chr1 61023150 61023385 -221170279 + AluJb SINE Alu 54 291 -21 1673 147 98 0 chr1 61023515 61023800 -221169864 - AluSq SINE Alu 0 313 1 21 0 0 0 chr1 61024079 61024100 -221169564 + AT_rich Low_complexity Low_complexity 1 21 0 1389 119 190 28 chr1 61024194 61024447 -221169217 - AluSg SINE Alu -6 294 1 245 299 58 0 chr1 61024579 61024666 -221168998 + MER117 DNA MER1_type 3 94 -103 349 310 152 22 chr1 61024935 61025119 -221168545 + MIR SINE MIR 53 260 -2 1687 142 97 0 chr1 61025190 61025457 -221168207 + AluSx SINE Alu 1 293 -19 197 265 24 114 chr1 61026447 61026613 -221167051 - L2 LINE L2 -541 2773 2623 1028 116 7 20 chr1 61026631 61026778 -221166886 + AluSq/x SINE Alu 1 145 -167 297 125 18 0 chr1 61026778 61026834 -221166830 + AluSp/q SINE Alu 247 303 0 1615 121 117 0 chr1 61026878 61027134 -221166530 - AluSx SINE Alu -26 286 1 1379 140 0 4 chr1 61027135 61027364 -221166300 + L1MB5 LINE L1 4961 5188 -958 753 114 38 15 chr1 61027379 61027511 -221166153 + L1MB5 LINE L1 5714 5848 -326 434 255 0 0 chr1 61027514 61027616 -221166048 + FLAM_A SINE Alu 2 103 -39 31 0 0 0 chr1 61027622 61027653 -221166011 + AT_rich Low_complexity Low_complexity 1 31 0 2063 119 10 7 chr1 61027655 61027949 -221165715 + AluSx SINE Alu 1 295 -17 302 269 115 8 chr1 61029283 61029413 -221164251 + MIR SINE MIR 48 191 -71 1702 138 52 31 chr1 61029856 61029970 -221163694 + AluJb SINE Alu 1 111 -201 219 36 0 0 chr1 61029970 61029998 -221163666 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1702 138 52 31 chr1 61029998 61030173 -221163491 + AluJb SINE Alu 111 296 -16 1282 243 73 62 chr1 61030220 61030673 -221162991 + MLT1J LTR MaLR 1 458 -53 2310 101 3 3 chr1 61030678 61030975 -221162689 - AluSx SINE Alu -15 297 1 353 256 139 29 chr1 61030985 61031157 -221162507 + L2 LINE L2 3121 3311 -2 2237 112 0 16 chr1 61031530 61031842 -221161822 + AluSc SINE Alu 1 307 -2 372 119 0 0 chr1 61032201 61032260 -221161404 + AluSp/q SINE Alu 243 301 -2 2295 104 0 43 chr1 61032313 61032639 -221161025 + AluSx SINE Alu 1 312 0 242 204 112 31 chr1 61032808 61032906 -221160758 + HAL1b LINE L1 62 167 -1181 554 278 128 67 chr1 61034269 61034507 -221159157 + MLT1J LTR MaLR 13 235 -276 2143 221 130 13 chr1 61034507 61035123 -221158541 - MER76 LTR ERV 0 688 1 554 278 128 67 chr1 61035123 61035344 -221158320 + MLT1J LTR MaLR 235 500 -11 839 128 68 0 chr1 61035676 61035809 -221157855 + FRAM SINE Alu 20 161 -15 300 239 137 0 chr1 61035814 61035931 -221157733 + L3 LINE CR1 1221 1353 -224 542 228 0 24 chr1 61036008 61036135 -221157529 + L2 LINE L2 3189 3312 -1 460 190 0 17 chr1 61036298 61036414 -221157250 + CT-rich Low_complexity Low_complexity 3 116 0 518 295 0 0 chr1 61036464 61036593 -221157071 - MIR3 SINE MIR -43 165 37 668 278 48 5 chr1 61037444 61037653 -221156011 + MIR SINE MIR 1 218 -44 2382 95 0 9 chr1 61038312 61038628 -221155036 - AluSq SINE Alu 0 313 1 330 271 115 16 chr1 61038792 61038914 -221154750 + L2 LINE L2 3139 3272 0 1765 169 0 4 chr1 61039084 61039357 -221154307 + AluJb SINE Alu 11 282 -30 400 285 122 12 chr1 61039374 61039546 -221154118 + MIR SINE MIR 57 247 -15 383 195 62 26 chr1 61039840 61039953 -221153711 - MIR3 SINE MIR -6 202 86 2370 93 0 3 chr1 61040009 61040309 -221153355 - AluSg SINE Alu -11 299 1 210 284 80 11 chr1 61040377 61040465 -221153199 - MIR SINE MIR -70 138 45 1910 222 117 31 chr1 61040658 61041204 -221152460 - MLT1E LTR MaLR 0 593 1 1884 171 61 0 chr1 61042179 61042507 -221151157 - MER7A DNA MER2_type 0 346 1 279 366 65 30 chr1 61042925 61043157 -221150507 + L2 LINE L2 2981 3220 -52 194 280 20 0 chr1 61043287 61043337 -221150327 - L2 LINE L2 -73 3199 3149 2167 128 0 7 chr1 61043736 61044034 -221149630 - AluSx SINE Alu -11 301 6 25 0 0 0 chr1 61044741 61044766 -221148898 + AT_rich Low_complexity Low_complexity 1 25 0 287 316 53 0 chr1 61044769 61044864 -221148800 + L2 LINE L2 3123 3222 -50 2096 103 33 0 chr1 61045865 61046164 -221147500 + AluSp SINE Alu 1 308 0 21 0 0 0 chr1 61046351 61046372 -221147292 + AT_rich Low_complexity Low_complexity 1 21 0 392 252 31 24 chr1 61046840 61046967 -221146697 + MIR SINE MIR 29 156 -106 969 90 0 37 chr1 61046987 61047154 -221146510 - AluSg/x SINE Alu 0 314 153 1076 262 27 44 chr1 61047264 61047584 -221146080 + MLT1I LTR MaLR 49 364 -45 2335 68 0 17 chr1 61047584 61047918 -221145746 - AluY SINE Alu 0 311 1 1076 262 27 44 chr1 61047918 61047963 -221145701 + MLT1I LTR MaLR 364 408 -1 219 328 69 0 chr1 61048041 61048157 -221145507 - L2 LINE L2 0 3272 3149 277 234 26 26 chr1 61048505 61048582 -221145082 + MIR SINE MIR 7 83 -179 219 36 0 0 chr1 61048684 61048712 -221144952 + (TA)n Simple_repeat Simple_repeat 1 28 0 978 104 0 30 chr1 61048860 61048995 -221144669 + AluY SINE Alu 56 186 -125 709 213 116 9 chr1 61099034 61099250 -221094414 - MIR SINE MIR -14 248 10 437 265 10 0 chr1 61099272 61099370 -221094294 - MIR SINE MIR -151 111 13 593 293 126 8 chr1 61099455 61099718 -221093946 - L2 LINE L2 -987 2327 2034 199 0 0 0 chr1 61100367 61100389 -221093275 + (TTTA)n Simple_repeat Simple_repeat 4 180 0 2327 98 0 3 chr1 61100389 61100676 -221092988 - AluSc SINE Alu -1 307 1 221 259 88 49 chr1 61100850 61101011 -221092653 + MIR SINE MIR 61 262 0 234 338 14 0 chr1 61101051 61101125 -221092539 + L3 LINE CR1 1494 1568 -9 218 272 0 76 chr1 61101667 61101759 -221091905 + MIR SINE MIR 14 98 -164 318 275 54 17 chr1 61101795 61101923 -221091741 + L1ME3A LINE L1 5941 6082 -81 1991 136 3 17 chr1 61101999 61102307 -221091357 + AluJb SINE Alu 1 304 0 193 184 61 0 chr1 61102677 61102726 -221090938 + L2 LINE L2 3204 3255 -17 304 257 100 64 chr1 61103161 61103301 -221090363 + MIR SINE MIR 1 145 -117 419 269 28 9 chr1 61103335 61103443 -221090221 - L2 LINE L2 0 3313 3204 870 135 0 0 chr1 61103793 61103926 -221089738 - FLAM_C SINE Alu 0 133 1 2343 114 3 0 chr1 61104056 61104364 -221089300 - AluSq SINE Alu -4 309 1 411 21 0 0 chr1 61104400 61104448 -221089216 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1853 144 32 14 chr1 61104463 61104760 -221088904 - AluSx SINE Alu 0 302 1 656 136 0 64 chr1 61104762 61104887 -221088777 - AluJo SINE Alu -178 134 18 494 289 62 31 chr1 61105005 61105265 -221088399 + L2 LINE L2 3046 3313 0 2254 121 3 0 chr1 61105398 61105696 -221087968 + AluSx SINE Alu 1 299 -13 562 258 135 0 chr1 61105735 61105913 -221087751 + MIR SINE MIR 60 261 -1 2328 111 0 0 chr1 61105974 61106271 -221087393 + AluSx SINE Alu 7 303 -9 2039 135 3 7 chr1 61106727 61107024 -221086640 - AluSx SINE Alu -16 296 1 372 213 0 0 chr1 61107739 61107819 -221085845 + MER116 DNA Mariner 1 80 0 226 268 155 0 chr1 61107883 61107980 -221085684 - MIR SINE MIR -78 184 73 506 322 17 6 chr1 61108416 61108590 -221085074 - MIR SINE MIR -12 250 75 230 296 91 0 chr1 61108629 61108680 -221084984 - L2 LINE L2 -9 3304 3259 2361 91 73 9 chr1 61108680 61109022 -221084642 - THE1B LTR MaLR 0 364 1 230 296 91 0 chr1 61109022 61109058 -221084606 - L2 LINE L2 -54 3259 3209 270 331 65 75 chr1 61109338 61109709 -221083955 + L2 LINE L2 2826 3192 -80 186 224 61 0 chr1 61109717 61109766 -221083898 - L2 LINE L2 0 3313 3262 869 258 86 8 chr1 61109931 61110187 -221083477 + Charlie8 DNA MER1_type 1 276 -2141 388 188 25 12 chr1 61110226 61110306 -221083358 + Charlie8 DNA MER1_type 1347 1427 -990 316 258 34 0 chr1 61110376 61110465 -221083199 + MIR SINE MIR 127 218 -44 2413 64 3 0 chr1 61110811 61111124 -221082540 - AluSp SINE Alu 0 314 1 822 283 109 3 chr1 61111390 61111719 -221081945 + L1ME4a LINE L1 5546 5909 -212 486 218 148 0 chr1 61111742 61111884 -221081780 + L1ME4a LINE L1 5959 6121 0 2193 125 0 10 chr1 61111965 61112260 -221081404 + AluSx SINE Alu 1 292 -20 355 318 29 0 chr1 61112270 61112440 -221081224 - L1ME4a LINE L1 0 6121 5947 343 283 100 0 chr1 61112477 61112597 -221081067 - MIR SINE MIR 0 262 131 1743 140 34 4 chr1 61112881 61113146 -221080518 - AluJb SINE Alu -39 273 1 353 328 89 11 chr1 61113379 61113559 -221080105 - L2 LINE L2 -3 3269 3076 932 164 33 0 chr1 61113769 61113947 -221079717 - AluJb SINE Alu 0 312 134 304 268 49 78 chr1 61113947 61114089 -221079575 - MIR SINE MIR -48 214 77 2301 65 4 0 chr1 61114194 61114470 -221079194 - AluY SINE Alu -12 299 23 2173 120 31 0 chr1 61114563 61114854 -221078810 - AluSx SINE Alu -12 300 1 556 274 108 43 chr1 61114923 61115200 -221078464 + L3 LINE CR1 1206 1500 -77 297 247 74 43 chr1 61115806 61115968 -221077696 - MIR SINE MIR -94 168 2 280 305 68 25 chr1 61116043 61116161 -221077503 + L2 LINE L2 3141 3263 -9 821 229 60 5 chr1 61117051 61117269 -221076395 - MIR SINE MIR -14 248 19 309 357 57 4 chr1 61117728 61117955 -221075709 + L2 LINE L2 2827 3065 -207 1877 165 7 3 chr1 61118273 61118564 -221075100 - AluJo SINE Alu -17 295 4 1367 203 95 9 chr1 61118889 61119205 -221074459 + MER2 DNA MER2_type 2 344 0 237 196 0 18 chr1 61119205 61119261 -221074403 + L1ME3A LINE L1 6111 6165 -5 253 232 152 18 chr1 61119296 61119408 -221074256 + MLT1J LTR MaLR 277 403 -108 469 283 0 8 chr1 61119441 61119561 -221074103 + L2 LINE L2 3191 3309 -4 431 304 16 0 chr1 61120250 61120375 -221073289 + MIR SINE MIR 20 146 -62 329 269 57 0 chr1 61120411 61120552 -221073112 - L2 LINE L2 -168 3104 2956 212 183 117 17 chr1 61120953 61121013 -221072651 + MIR SINE MIR 19 84 -124 447 302 55 39 chr1 61121231 61121413 -221072251 - MIR3 SINE MIR -18 190 6 493 277 65 0 chr1 61121685 61121840 -221071824 - MER103 DNA DNA 0 166 2 235 328 33 33 chr1 61121868 61121990 -221071674 + MIR3 SINE MIR 1 122 -86 250 375 10 0 chr1 61122068 61122172 -221071492 - L2 LINE L2 -30 3242 3138 1878 164 0 35 chr1 61122344 61122661 -221071003 + AluJb SINE Alu 2 307 -5 248 274 13 78 chr1 61123550 61123703 -221069961 + L2 LINE L2 2911 3053 -260 268 243 29 0 chr1 61123953 61124023 -221069641 - MIR SINE MIR -110 152 81 2464 65 10 0 chr1 61124110 61124404 -221069260 + AluY SINE Alu 1 297 -14 2244 99 0 14 chr1 61124418 61124711 -221068953 + AluSx SINE Alu 1 289 -23 284 301 43 0 chr1 61125280 61125373 -221068291 - L2 LINE L2 -3 3310 3214 549 251 145 0 chr1 61125508 61125687 -221067977 + MIR SINE MIR 35 239 -23 878 251 147 41 chr1 61127008 61127450 -221066214 - LTR16C LTR ERVL 0 491 3 226 365 32 8 chr1 61127708 61127834 -221065830 + MIR SINE MIR 128 256 -6 2587 80 11 0 chr1 61127861 61128212 -221065452 + THE1A LTR MaLR 1 355 0 3744 67 0 0 chr1 61128212 61128705 -221064959 + THE1A-int LTR MaLR 1 493 -1087 915 89 0 0 chr1 61128705 61128817 -221064847 - AluSg/x SINE Alu -18 294 183 1144 67 0 0 chr1 61128818 61128952 -221064712 - AluY SINE Alu -177 134 1 7237 94 27 22 chr1 61128952 61130040 -221063624 + THE1A-int LTR MaLR 488 1580 0 2279 62 54 48 chr1 61130040 61130329 -221063335 + THE1A LTR MaLR 1 295 -60 2050 92 44 7 chr1 61130329 61130625 -221063039 + AluSx SINE Alu 1 306 0 2279 62 54 48 chr1 61130625 61130687 -221062977 + THE1A LTR MaLR 295 355 0 192 306 27 18 chr1 61130939 61131050 -221062614 + L2 LINE L2 1784 1895 -1419 250 269 164 0 chr1 61131092 61131196 -221062468 + MIR SINE MIR 94 214 -48 319 163 33 109 chr1 61131380 61131472 -221062192 + MIR3 SINE MIR 110 194 -14 494 205 6 103 chr1 61131856 61131973 -221061691 + MIR SINE MIR 7 107 -155 2300 99 0 7 chr1 61131973 61132275 -221061389 - AluSx SINE Alu -10 302 3 494 205 6 103 chr1 61132275 61132313 -221061351 + MIR SINE MIR 107 147 -115 317 309 143 0 chr1 61132319 61132445 -221061219 - L2 LINE L2 0 3313 3170 287 177 0 0 chr1 61132562 61132616 -221061048 + L2 LINE L2 3218 3312 -1 474 149 0 35 chr1 61132784 61132871 -221060793 - MIR SINE MIR -110 152 69 532 276 103 5 chr1 61133405 61133590 -221060074 + MIR SINE MIR 12 214 -48 327 228 89 30 chr1 61133760 61133861 -221059803 - MIR SINE MIR -66 142 36 199 231 0 0 chr1 61134003 61134057 -221059607 + MIR SINE MIR 99 151 -62 2489 84 0 10 chr1 61135469 61135777 -221057887 - AluSx SINE Alu -7 305 1 264 204 0 0 chr1 61136188 61136232 -221057432 + Charlie1 DNA MER1_type 5 48 -2713 592 325 26 22 chr1 61136769 61136997 -221056667 - MIR SINE MIR -27 235 7 1331 188 141 9 chr1 61137024 61137344 -221056320 + MLT1A1 LTR MaLR 1 362 -3 2342 95 0 0 chr1 61137914 61138232 -221055432 - AluSx SINE Alu 0 318 1 1803 142 158 11 chr1 61138736 61139109 -221054555 + MSTA LTR MaLR 1 428 0 2506 85 0 0 chr1 61139154 61139459 -221054205 - AluSc SINE Alu -4 305 1 1003 253 164 6 chr1 61139562 61139910 -221053754 + LTR16C LTR ERVL 89 491 0 2216 114 0 0 chr1 61140103 61140416 -221053248 + AluSg SINE Alu 1 313 0 395 258 72 53 chr1 61140657 61140866 -221052798 - MIR SINE MIR -18 244 32 217 228 99 30 chr1 61140884 61140985 -221052679 + L2 LINE L2 3164 3271 -1 427 323 22 18 chr1 61141381 61141604 -221052060 - MIR SINE MIR -32 230 6 521 256 128 13 chr1 61142113 61142269 -221051395 - MIR SINE MIR -16 246 73 2342 96 7 0 chr1 61142319 61142612 -221051052 - AluSx SINE Alu -17 295 1 273 325 44 12 chr1 61142833 61142993 -221050671 + L2 LINE L2 2943 3107 -165 198 313 84 0 chr1 61143095 61143178 -221050486 - MIR SINE MIR -82 126 37 228 285 85 73 chr1 61143611 61143776 -221049888 + L2 LINE L2 2924 3090 -182 457 252 8 39 chr1 61143952 61144079 -221049585 - MLT1K LTR MaLR 0 588 466 2291 104 0 7 chr1 61144184 61144482 -221049182 - AluSx SINE Alu -16 296 1 311 324 84 22 chr1 61144625 61144850 -221048814 - MLT1K LTR MaLR -348 240 2 342 239 9 46 chr1 61144855 61144964 -221048700 + MIR SINE MIR 96 200 -62 825 264 77 26 chr1 61144967 61145240 -221048424 - L2 LINE L2 0 3313 3027 503 253 45 64 chr1 61145262 61145527 -221048137 - L1MC5 LINE L1 -32 7929 7670 1064 142 0 0 chr1 61145556 61145711 -221047953 - AluJo SINE Alu -22 290 136 246 221 40 47 chr1 61145713 61145771 -221047893 - L1MC5 LINE L1 -310 7651 7594 291 38 57 0 chr1 61145771 61145824 -221047840 + (TA)n Simple_repeat Simple_repeat 2 57 0 246 221 40 47 chr1 61145824 61145914 -221047750 - L1MC5 LINE L1 -367 7594 7504 968 118 0 0 chr1 61145922 61146049 -221047615 - AluJo SINE Alu -185 127 1 467 271 46 28 chr1 61146053 61146271 -221047393 - L1MC5 LINE L1 -448 7513 7292 647 125 27 9 chr1 61146419 61146531 -221047133 - FLAM_C SINE Alu 0 143 30 31 0 0 0 chr1 61146541 61146572 -221047092 + AT_rich Low_complexity Low_complexity 1 31 0 929 247 85 108 chr1 61146704 61146768 -221046896 - L1MC5 LINE L1 -743 7218 7154 1980 142 0 20 chr1 61146768 61147071 -221046593 - AluJb SINE Alu -15 297 1 929 247 85 108 chr1 61147071 61147131 -221046533 - L1MC5 LINE L1 -807 7154 7094 1928 123 4 0 chr1 61147131 61147391 -221046273 + AluSq SINE Alu 1 261 -52 929 247 85 108 chr1 61147391 61147693 -221045971 - L1MC5 LINE L1 -867 7094 6786 2035 125 62 0 chr1 61147693 61147981 -221045683 - AluSx SINE Alu -6 306 1 929 247 85 108 chr1 61147981 61148313 -221045351 - L1MC5 LINE L1 -1175 6786 6448 2329 101 0 0 chr1 61148313 61148611 -221045053 + AluSx SINE Alu 1 298 -14 929 247 85 108 chr1 61148611 61149120 -221044544 - L1MC5 LINE L1 -1513 6448 5951 29 60 0 0 chr1 61149172 61149222 -221044442 + AT_rich Low_complexity Low_complexity 1 50 0 665 181 72 95 chr1 61149272 61149337 -221044327 + L2 LINE L2 3094 3159 -154 2478 97 0 0 chr1 61149337 61149647 -221044017 - AluSg SINE Alu 0 310 1 665 181 72 95 chr1 61149647 61149802 -221043862 + L2 LINE L2 3159 3309 -4 459 187 0 0 chr1 61150354 61150429 -221043235 + AluJ/FLAM SINE Alu 9 83 -229 21 0 0 0 chr1 61151348 61151369 -221042295 + AT_rich Low_complexity Low_complexity 1 21 0 2370 109 0 13 chr1 61151426 61151738 -221041926 - AluSx SINE Alu -4 308 1 23 54 0 0 chr1 61151811 61151848 -221041816 + AT_rich Low_complexity Low_complexity 1 37 0 381 296 127 0 chr1 61152007 61152149 -221041515 - MIR3 SINE MIR -19 189 30 313 219 0 0 chr1 61152389 61152453 -221041211 - MIR SINE MIR -140 122 59 303 283 11 22 chr1 61152600 61152692 -221040972 + MIR SINE MIR 1 91 -171 470 214 27 9 chr1 61152812 61152924 -221040740 + LTR16C LTR ERVL 188 301 -190 456 195 62 0 chr1 61152951 61153064 -221040600 + LTR16C LTR ERVL 366 485 -6 234 374 0 0 chr1 61153067 61153158 -221040506 + MIR SINE MIR 95 185 -77 214 170 85 21 chr1 61154021 61154068 -221039596 + L2 LINE L2 3264 3313 0 422 272 99 12 chr1 61154157 61154319 -221039345 - L2 LINE L2 -217 3055 2880 371 326 71 15 chr1 61155573 61155778 -221037886 - MLT1L LTR MaLR -202 391 111 341 325 18 0 chr1 61155929 61156043 -221037621 - MIR SINE MIR -57 151 36 368 278 21 0 chr1 61156508 61156605 -221037059 + MIR3 SINE MIR 110 208 0 357 24 0 0 chr1 61157086 61157128 -221036536 + (CA)n Simple_repeat Simple_repeat 1 42 0 255 314 35 0 chr1 61157252 61157338 -221036326 + MIR SINE MIR 95 183 -79 484 276 39 73 chr1 61157343 61157629 -221036035 + L2 LINE L2 3038 3313 0 338 254 123 8 chr1 61157687 61157809 -221035855 - L2 LINE L2 0 3272 3137 1627 111 0 0 chr1 61159833 61160075 -221033589 + AluSg/x SINE Alu 76 317 0 276 274 26 80 chr1 61160609 61160722 -221032942 + MIR3 SINE MIR 87 193 -15 538 287 70 39 chr1 61160730 61160869 -221032795 + MIR SINE MIR 3 153 -109 2475 84 0 0 chr1 61160869 61161177 -221032487 - AluY SINE Alu -3 308 1 538 287 70 39 chr1 61161177 61161267 -221032397 + MIR SINE MIR 153 239 -23 192 176 0 0 chr1 61161342 61161376 -221032288 - MIR SINE MIR -63 145 112 224 287 120 37 chr1 61161899 61162007 -221031657 + MIR SINE MIR 72 188 -74 303 175 0 0 chr1 61162240 61162297 -221031367 + CT-rich Low_complexity Low_complexity 4 60 0 2349 118 0 0 chr1 61162302 61162607 -221031057 - AluSx SINE Alu -7 305 1 276 151 19 0 chr1 61162951 61163004 -221030660 - HAL1 LINE L1 -1613 894 841 211 345 49 56 chr1 61163474 61163616 -221030048 - L2 LINE L2 0 3272 3132 334 274 216 5 chr1 61163946 61164136 -221029528 - L1 LINE L1 -2801 3345 3116 1995 129 37 10 chr1 61164137 61164431 -221029233 - AluSx SINE Alu -10 302 1 317 268 21 3 chr1 61164534 61164617 -221029047 - MIR SINE MIR -100 108 18 364 219 0 0 chr1 61164675 61164748 -221028916 - MIR SINE MIR -112 150 78 586 257 51 5 chr1 61165314 61165504 -221028160 + MIR SINE MIR 29 224 -38 268 290 91 43 chr1 61165765 61165951 -221027713 + L2 LINE L2 3049 3243 -70 182 267 50 17 chr1 61166119 61166179 -221027485 - L2 LINE L2 -85 3187 3126 456 238 24 109 chr1 61166215 61166324 -221027340 - LTR33 LTR ERVL -2 519 435 2143 137 0 3 chr1 61166324 61166616 -221027048 + AluSx SINE Alu 3 293 -19 456 238 24 109 chr1 61166616 61166716 -221026948 - LTR33 LTR ERVL -86 435 328 271 253 38 13 chr1 61166789 61166868 -221026796 - LTR33 LTR ERVL -426 95 15 322 297 26 7 chr1 61166997 61167152 -221026512 - L2 LINE L2 -290 2982 2825 360 274 20 0 chr1 61167570 61167672 -221025992 + MIR SINE MIR 52 155 -107 272 217 142 9 chr1 61167664 61167770 -221025894 - MIR SINE MIR 0 262 143 * 1568 169 4 0 chr1 61167784 61168021 -221025643 + AluSg/x SINE Alu 73 310 -2 647 245 0 50 chr1 61168200 61168359 -221025305 - MIR SINE MIR -28 234 84 250 293 12 24 chr1 61168363 61168445 -221025219 - MIR SINE MIR -4 258 178 190 256 0 0 chr1 61169188 61169231 -221024433 - MIR SINE MIR -117 145 103 203 299 170 14 chr1 61169831 61169978 -221023686 - MIR3 SINE MIR -22 186 17 337 325 64 13 chr1 61170305 61170462 -221023202 - MIR SINE MIR -50 212 48 341 350 22 6 chr1 61170543 61170723 -221022941 - L2 LINE L2 -235 3037 2855 316 345 68 21 chr1 61170766 61170957 -221022707 + L2 LINE L2 3072 3271 -1 415 271 25 113 chr1 61170985 61171122 -221022542 - MIR SINE MIR 0 262 162 2333 102 3 0 chr1 61171122 61171416 -221022248 - AluSx SINE Alu -17 295 1 415 271 25 113 chr1 61171416 61171551 -221022113 - MIR SINE MIR -100 162 17 269 274 12 0 chr1 61172665 61172749 -221020915 + (TG)n Simple_repeat Simple_repeat 1 85 0 412 229 21 0 chr1 61173327 61173423 -221020241 + MER81 DNA DNA 17 114 0 205 172 23 39 chr1 61174360 61174488 -221019176 + (TGG)n Simple_repeat Simple_repeat 3 128 0 * 210 141 39 31 chr1 61174485 61174613 -221019051 + (TG)n Simple_repeat Simple_repeat 1 129 0 249 138 15 69 chr1 61174652 61174782 -221018882 + (TGG)n Simple_repeat Simple_repeat 3 125 0 183 136 57 34 chr1 61174799 61174975 -221018689 + (TG)n Simple_repeat Simple_repeat 1 180 0 615 207 0 22 chr1 61174992 61175127 -221018537 - L1MB5 LINE L1 -308 5866 5735 914 154 0 19 chr1 61175299 61175455 -221018209 + FRAM SINE Alu 20 172 -4 411 319 94 14 chr1 61175455 61175731 -221017933 - L2 LINE L2 -807 2507 2210 236 342 27 0 chr1 61175803 61175914 -221017750 + L2 LINE L2 3158 3271 -1 181 262 49 0 chr1 61176679 61176740 -221016924 + L2 LINE L2 3178 3241 -31 214 188 0 62 chr1 61176989 61177053 -221016611 + (CACCC)n Simple_repeat Simple_repeat 1 60 0 334 241 5 0 chr1 61177369 61177448 -221016216 + MIR SINE MIR 14 95 -113 727 215 11 63 chr1 61177449 61177640 -221016024 - MER5A DNA MER1_type -8 181 1 413 227 97 32 chr1 61177775 61177929 -221015735 - MIR3 SINE MIR -23 185 22 1241 274 45 41 chr1 61177988 61178477 -221015187 + LTR16C LTR ERVL 1 491 0 435 327 89 0 chr1 61178503 61178671 -221014993 - MIR SINE MIR -12 250 68 767 264 74 25 chr1 61180028 61180270 -221013394 - MIR SINE MIR 0 262 9 204 371 69 9 chr1 61180379 61180611 -221013053 - L2 LINE L2 -351 2963 2718 354 226 36 0 chr1 61180630 61180714 -221012950 + MIR SINE MIR 67 153 -109 2374 95 0 0 chr1 61181088 61181384 -221012280 + AluSg1 SINE Alu 1 296 -13 247 313 106 0 chr1 61181433 61181593 -221012071 - MIR SINE MIR -65 197 21 401 236 32 0 chr1 61181944 61182069 -221011595 + MIR SINE MIR 25 139 -69 298 240 13 0 chr1 61182284 61182359 -221011305 + MIR SINE MIR 187 262 0 1612 166 65 0 chr1 61182386 61182544 -221011120 - AluJb SINE Alu -16 296 150 315 0 0 0 chr1 61182544 61182579 -221011085 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1612 166 65 0 chr1 61182579 61182698 -221010966 - AluJb SINE Alu -162 150 1 593 242 40 7 chr1 61182956 61183105 -221010559 + MIR SINE MIR 39 192 -70 746 265 115 49 chr1 61183597 61184123 -221009541 - L2 LINE L2 0 3313 2729 1882 164 0 17 chr1 61184123 61184442 -221009222 - AluJb SINE Alu 0 312 3 746 265 115 49 chr1 61184442 61184589 -221009075 - L2 LINE L2 -584 2729 2593 369 299 129 0 chr1 61185053 61185200 -221008464 - L2 LINE L2 0 3313 3148 323 329 120 66 chr1 61185346 61185771 -221007893 + L2 LINE L2 2804 3251 -21 2546 64 0 0 chr1 61185774 61186070 -221007594 - AluY SINE Alu -15 296 1 2305 112 36 8 chr1 61186097 61186462 -221007202 - MLT1B LTR MaLR 0 390 16 431 151 63 56 chr1 61187082 61187208 -221006456 + L1MD3 LINE L1 6990 7116 -879 355 218 10 109 chr1 61187208 61187309 -221006355 + MLT1F1 LTR MaLR 35 125 -442 2865 208 12 5 chr1 61187309 61187897 -221005767 + L1MD3 LINE L1 7404 7995 0 642 278 30 48 chr1 61188031 61188136 -221005528 - L1MC4a LINE L1 -1875 5933 5828 1475 167 59 3 chr1 61188136 61188442 -221005222 + MER33 DNA MER1_type 2 324 0 642 278 30 48 chr1 61188442 61188631 -221005033 - L1MC4a LINE L1 -1980 5828 5644 1254 180 15 0 chr1 61188635 61188841 -221004823 + MER58A DNA MER1_type 7 215 -9 2308 80 21 0 chr1 61188842 61189129 -221004535 + AluSc SINE Alu 1 293 -16 1270 251 119 3 chr1 61189177 61189531 -221004133 - LTR16A LTR ERVL 0 450 56 5502 324 44 24 chr1 61189680 61189919 -221003745 - ERVL LTR ERVL -381 5383 5150 2224 126 13 0 chr1 61189919 61190220 -221003444 + AluSx SINE Alu 1 305 -7 5502 324 44 24 chr1 61190220 61191164 -221002500 - ERVL LTR ERVL -614 5150 4226 1849 143 43 32 chr1 61191164 61191535 -221002129 + THE1C LTR MaLR 1 375 0 5502 324 44 24 chr1 61191535 61192792 -221000872 - ERVL LTR ERVL -1538 4226 2893 1559 191 30 23 chr1 61192826 61193129 -221000535 + AluJb SINE Alu 1 305 -7 391 218 143 60 chr1 61193129 61193262 -221000402 + L2 LINE L2 3168 3311 -2 378 330 177 14 chr1 61193910 61194437 -220999227 + L2 LINE L2 2694 3313 0 2209 121 3 16 chr1 61194489 61194804 -220998860 - AluSx SINE Alu -1 311 1 2337 131 0 0 chr1 61194987 61195299 -220998365 - AluSx SINE Alu 0 312 1 205 243 97 165 chr1 61195728 61196033 -220997631 + L2 LINE L2 2798 3075 -197 1024 258 100 14 chr1 61196058 61196407 -220997257 - L2 LINE L2 0 3313 2935 342 43 0 0 chr1 61196416 61196462 -220997202 - MADE1 DNA Mariner -34 46 1 536 231 170 7 chr1 61196571 61196718 -220996946 - L2 LINE L2 -967 2347 2177 415 252 44 15 chr1 61196729 61196904 -220996760 + MIR SINE MIR 38 262 0 363 274 203 30 chr1 61198880 61199077 -220994587 - MIR SINE MIR -25 237 7 1669 161 20 40 chr1 61199606 61199904 -220993760 - AluJo SINE Alu -20 292 1 566 266 57 80 chr1 61200018 61200319 -220993345 - L2 LINE L2 -3 3269 2976 247 299 28 19 chr1 61200419 61200526 -220993138 + HAL1 LINE L1 844 951 -1556 201 121 0 0 chr1 61200533 61200566 -220993098 + (GA)n Simple_repeat Simple_repeat 1 33 0 213 299 122 19 chr1 61201058 61201165 -220992499 - L2 LINE L2 -5 3308 3191 239 289 0 0 chr1 61201951 61202003 -220991661 + MER117 DNA MER1_type 103 154 -43 385 318 53 33 chr1 61202070 61202221 -220991443 + L2 LINE L2 3116 3269 -3 269 171 57 43 chr1 61202754 61202824 -220990840 - tRNA-Ile-ATT tRNA tRNA -6 71 1 21 0 0 0 chr1 61205107 61205128 -220988536 + AT_rich Low_complexity Low_complexity 1 21 0 523 294 72 13 chr1 61205521 61205756 -220987908 - MIR SINE MIR -3 259 11 272 245 113 87 chr1 61206446 61206666 -220986998 + L1MC4 LINE L1 7029 7255 -737 745 267 51 102 chr1 61206777 61207463 -220986201 + L1MC5 LINE L1 7276 7926 -35 29 0 0 0 chr1 61207593 61207622 -220986042 + AT_rich Low_complexity Low_complexity 1 29 0 409 316 76 57 chr1 61208106 61208422 -220985242 + L2 LINE L2 2804 3125 -147 351 294 55 75 chr1 61208647 61208729 -220984935 + L1ME4a LINE L1 4488 4570 -1576 1903 183 0 0 chr1 61208729 61209030 -220984634 + AluJo SINE Alu 3 303 -9 351 294 55 75 chr1 61209030 61209239 -220984425 + L1ME4a LINE L1 4570 4773 -1373 301 270 60 20 chr1 61209441 61209541 -220984123 - L2 LINE L2 0 3272 3169 376 96 0 0 chr1 61209978 61210030 -220983634 - Alu SINE Alu -9 291 240 1262 73 0 0 chr1 61210030 61210181 -220983483 - AluSq/x SINE Alu -162 151 1 599 246 19 119 chr1 61210253 61210448 -220983216 + L1ME4a LINE L1 5635 5769 -352 1964 144 7 0 chr1 61210448 61210740 -220982924 + AluSx SINE Alu 1 294 -18 599 246 19 119 chr1 61210740 61210982 -220982682 + L1ME4a LINE L1 5769 6033 -88 828 315 131 54 chr1 61211217 61212194 -220981470 + L2 LINE L2 1918 2969 -345 372 301 45 30 chr1 61212197 61212330 -220981334 + L2 LINE L2 3134 3268 -4 694 229 54 49 chr1 61212536 61212741 -220980923 - MIR SINE MIR -54 208 3 1834 150 14 3 chr1 61213215 61213341 -220980323 + AluJo SINE Alu 1 124 -188 180 0 0 0 chr1 61213341 61213361 -220980303 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1834 150 14 3 chr1 61213361 61213521 -220980143 + AluJo SINE Alu 124 290 -22 911 202 62 5 chr1 61213541 61213749 -220979915 - MIR SINE MIR -37 225 6 211 244 139 35 chr1 61213759 61213845 -220979819 - MIR3 SINE MIR -44 164 70 2114 117 7 7 chr1 61214315 61214623 -220979041 + AluSx SINE Alu 1 308 -4 1824 175 44 39 chr1 61214932 61215320 -220978344 + MLT1D LTR MaLR 1 390 -115 536 277 13 38 chr1 61215369 61215528 -220978136 + MIR SINE MIR 58 212 -50 410 357 84 23 chr1 61215847 61216155 -220977509 + L2 LINE L2 1987 2313 -1001 575 236 42 35 chr1 61216356 61216500 -220977164 + MIR3 SINE MIR 12 156 -52 295 328 106 15 chr1 61217003 61217201 -220976463 - L2 LINE L2 -1 3312 3097 386 288 153 15 chr1 61217230 61217570 -220976094 - L2 LINE L2 -1311 2003 1617 784 175 139 58 chr1 61217735 61218009 -220975655 + L2 LINE L2 2981 3276 -37 3420 92 2 17 chr1 61218198 61218665 -220974999 + L1PA14 LINE L1 5698 6157 -4 1980 144 0 43 chr1 61218703 61219029 -220974635 - AluSx SINE Alu 0 312 1 257 332 170 16 chr1 61219406 61219653 -220974011 + L2 LINE L2 3029 3313 0 1681 312 108 38 chr1 61219759 61220286 -220973378 + L2 LINE L2 1618 2106 -1208 2392 72 0 0 chr1 61220286 61220578 -220973086 - AluY SINE Alu -18 293 2 1681 312 108 38 chr1 61220578 61221139 -220972525 + L2 LINE L2 2106 2783 -531 915 251 68 124 chr1 61221377 61221494 -220972170 + L1MEd LINE L1 561 683 -5436 1941 150 0 13 chr1 61221494 61221808 -220971856 + AluJo SINE Alu 1 310 -2 915 251 68 124 chr1 61221808 61222022 -220971642 + L1MEd LINE L1 683 908 -5211 345 91 0 0 chr1 61222022 61222066 -220971598 + Alu SINE Alu 1 44 -255 2414 80 0 3 chr1 61222066 61222365 -220971299 + AluSc SINE Alu 1 298 -11 915 251 68 124 chr1 61222365 61222650 -220971014 + L1MEd LINE L1 907 1180 -4939 1944 172 0 0 chr1 61222650 61222953 -220970711 + AluJo SINE Alu 2 304 -8 915 251 68 124 chr1 61222953 61223016 -220970648 + L1MEd LINE L1 1180 1245 -4874 2520 195 80 46 chr1 61223042 61223566 -220970098 + MLT1F LTR MaLR 1 542 0 295 329 29 53 chr1 61223572 61223779 -220969885 + L2 LINE L2 2772 2973 -341 281 311 107 0 chr1 61223883 61223986 -220969678 + L2 LINE L2 3187 3300 -13 22 0 0 0 chr1 61224307 61224329 -220969335 + AT_rich Low_complexity Low_complexity 1 22 0 238 269 0 0 chr1 61224961 61225013 -220968651 + L2 LINE L2 3008 3059 -213 180 271 65 112 chr1 61225098 61225136 -220968528 + L2 LINE L2 3162 3200 -113 2159 124 13 0 chr1 61225136 61225435 -220968229 - AluSx SINE Alu -9 303 1 180 271 65 112 chr1 61225435 61225503 -220968161 + L2 LINE L2 3200 3263 -50 * 816 183 214 4 chr1 61225502 61225764 -220967900 + MER5C DNA MER1_type 8 324 0 294 283 11 11 chr1 61226678 61226770 -220966894 + L1MC4 LINE L1 7942 8033 -9 477 178 118 52 chr1 61226886 61227021 -220966643 + L1ME3A LINE L1 6018 6161 -9 331 250 67 35 chr1 61228249 61228460 -220965204 - L1MEc LINE L1 -3849 2312 2100 1087 135 17 11 chr1 61228480 61228658 -220965006 - AluJo/FRAM SINE Alu 0 312 134 1620 173 23 36 chr1 61228658 61228964 -220964700 - AluSx SINE Alu -10 302 1 1833 138 25 7 chr1 61229043 61229325 -220964339 - AluJo SINE Alu -25 287 1 247 298 124 4 chr1 61229387 61229612 -220964052 - L1MEc LINE L1 -4973 1146 895 2488 168 92 63 chr1 61229684 61229761 -220963903 + MER51A LTR ERV1 9 82 -552 2251 118 0 6 chr1 61229761 61230075 -220963589 + AluSx SINE Alu 1 312 0 2488 168 92 63 chr1 61230075 61230497 -220963167 + MER51A LTR ERV1 82 634 0 380 386 33 17 chr1 61230497 61230738 -220962926 - L1MEc LINE L1 -5279 840 596 1894 199 6 11 chr1 61230813 61231000 -220962664 - MER2 DNA MER2_type 0 345 159 1314 162 63 0 chr1 61231000 61231222 -220962442 - MER46A DNA MER2_type 0 236 1 1894 199 6 11 chr1 61231222 61231381 -220962283 - MER2 DNA MER2_type -186 159 1 613 283 87 28 chr1 61231478 61231800 -220961864 - L1MEc LINE L1 -5712 407 67 278 337 70 63 chr1 61231858 61232255 -220961409 + L2 LINE L2 2771 3220 -52 959 259 13 17 chr1 61233027 61233263 -220960401 + MIR SINE MIR 21 255 -7 397 228 31 25 chr1 61233354 61233488 -220960176 - MIR SINE MIR -16 246 113 2337 85 0 26 chr1 61233798 61234103 -220959561 - AluSx SINE Alu -15 297 1 1780 148 20 46 chr1 61234177 61234341 -220959323 - AluJb SINE Alu -15 297 143 2384 82 3 0 chr1 61234341 61234635 -220959029 - AluSg SINE Alu -15 295 1 1780 148 20 46 chr1 61234635 61234775 -220958889 - AluJb SINE Alu -169 143 1 322 324 81 20 chr1 61234969 61235117 -220958547 - L2 LINE L2 -5 3267 3111 476 206 7 110 chr1 61235212 61235313 -220958351 - L2 LINE L2 0 3313 3228 2138 133 3 0 chr1 61235313 61235613 -220958051 + AluSx SINE Alu 5 305 -7 476 206 7 110 chr1 61235613 61235647 -220958017 - L2 LINE L2 -85 3228 3192 186 333 8 48 chr1 61235679 61235805 -220957859 - L2 LINE L2 -262 3010 2890 2213 98 0 0 chr1 61235806 61236083 -220957581 + AluSg SINE Alu 1 277 -33 195 42 0 0 chr1 61236085 61236109 -220957555 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 534 315 88 79 chr1 61236235 61236560 -220957104 - L2 LINE L2 0 3272 2951 1145 245 32 0 chr1 61236560 61236813 -220956851 - MIR SINE MIR 0 262 2 534 315 88 79 chr1 61236813 61237270 -220956394 - L2 LINE L2 -321 2951 2481 1391 147 173 38 chr1 61237270 61237536 -220956128 + AluJb SINE Alu 1 302 0 534 315 88 79 chr1 61237536 61237694 -220955970 - L2 LINE L2 -791 2481 2326 1855 176 0 0 chr1 61237694 61238001 -220955663 - AluJb SINE Alu -5 307 1 1953 91 0 60 chr1 61238136 61238466 -220955198 + AluSg SINE Alu 1 312 0 472 284 84 6 chr1 61238710 61238875 -220954789 + MER20B DNA MER1_type 43 219 0 366 200 12 47 chr1 61238875 61238960 -220954704 - MIR3 SINE MIR -48 160 79 1836 122 50 7 chr1 61239495 61239799 -220953865 + AluSx SINE Alu 1 312 0 192 288 30 0 chr1 61240492 61240558 -220953106 + L3 LINE CR1 1332 1399 -178 205 350 68 0 chr1 61241936 61242039 -220951625 - L2 LINE L2 -21 3251 3142 517 241 150 0 chr1 61243432 61243565 -220950099 - MIR SINE MIR -76 186 34 1541 154 55 20 chr1 61243606 61243899 -220949765 + AluSx SINE Alu 1 303 -9 2289 70 17 10 chr1 61243900 61244198 -220949466 + AluSq SINE Alu 2 301 -12 2177 102 16 7 chr1 61244338 61244641 -220949023 + AluSx SINE Alu 1 306 -6 194 328 104 0 chr1 61244835 61244948 -220948716 + MIR SINE MIR 22 151 -111 718 198 0 0 chr1 61244948 61245064 -220948600 - FLAM_C SINE Alu -17 116 1 194 328 104 0 chr1 61245064 61245075 -220948589 + MIR SINE MIR 151 159 -103 248 191 0 0 chr1 61245327 61245369 -220948295 + L2 LINE L2 3255 3296 -17 386 278 143 8 chr1 61245510 61245643 -220948021 - MIR SINE MIR -111 151 1 206 250 0 0 chr1 61246319 61246359 -220947305 - L2 LINE L2 -18 3254 3215 193 253 89 51 chr1 61246380 61246459 -220947205 - MIR3 SINE MIR -34 174 93 1612 185 6 35 chr1 61246769 61247082 -220946582 - AluJo SINE Alu -8 304 1 230 336 65 28 chr1 61248542 61248649 -220945015 - MIR SINE MIR -88 174 64 24 32 0 0 chr1 61248873 61248904 -220944760 + AT_rich Low_complexity Low_complexity 1 31 0 254 213 0 0 chr1 61249312 61249359 -220944305 - MIR SINE MIR -111 151 105 627 246 153 19 chr1 61249887 61250102 -220943562 - L1MC4a LINE L1 -1962 5846 5603 448 179 0 13 chr1 61250102 61250180 -220943484 - FLAM_C SINE Alu -5 138 62 496 83 0 0 chr1 61250192 61250264 -220943400 + Alu SINE Alu 241 312 0 2286 87 0 7 chr1 61250400 61250700 -220942964 - AluSc SINE Alu -11 298 1 29 47 0 0 chr1 61251191 61251234 -220942430 + AT_rich Low_complexity Low_complexity 1 43 0 452 281 164 12 chr1 61251902 61252073 -220941591 - MIR SINE MIR -58 204 8 1079 185 22 0 chr1 61253151 61253335 -220940329 - MER5A DNA MER1_type 0 189 2 22 35 0 0 chr1 61254062 61254091 -220939573 + AT_rich Low_complexity Low_complexity 1 29 0 2222 106 0 0 chr1 61254308 61254610 -220939054 + AluSx SINE Alu 1 302 -10 1769 141 21 14 chr1 61255613 61255896 -220937768 + AluJb SINE Alu 1 285 -27 224 342 137 17 chr1 61255979 61256096 -220937568 - MIR3 SINE MIR -74 134 4 477 171 12 0 chr1 61257284 61257366 -220936298 + FLAM SINE Alu 50 132 -11 22 0 0 0 chr1 61257366 61257388 -220936276 + AT_rich Low_complexity Low_complexity 1 22 0 1878 144 14 3 chr1 61258467 61258759 -220934905 - AluSx SINE Alu -17 295 1 1826 148 7 16 chr1 61258846 61259150 -220934514 + AluJb SINE Alu 1 301 -11 349 169 15 0 chr1 61259701 61259766 -220933898 - L1MA8 LINE L1 -238 6053 5988 2136 117 0 0 chr1 61259970 61260269 -220933395 - AluSx SINE Alu -13 299 1 660 209 169 13 chr1 61260392 61260617 -220933047 - L1MB8 LINE L1 -97 6081 5822 2299 88 0 3 chr1 61260620 61260925 -220932739 - AluSx SINE Alu -8 304 1 2137 114 0 3 chr1 61261136 61261442 -220932222 - AluSx SINE Alu -7 305 1 1688 133 3 112 chr1 61261501 61261840 -220931824 + AluJo SINE Alu 1 302 0 2059 112 3 0 chr1 61263505 61263791 -220929873 - AluSq SINE Alu -26 287 1 910 106 0 8 chr1 61264168 61264300 -220929364 + FLAM_C SINE Alu 1 131 -12 344 183 0 17 chr1 61264546 61264606 -220929058 + AluJb SINE Alu 59 117 -185 366 348 168 15 chr1 61265866 61266398 -220927266 - L2 LINE L2 0 3272 2652 1979 130 0 7 chr1 61266977 61267270 -220926394 - AluSx SINE Alu -17 295 5 659 229 83 10 chr1 61267322 61267514 -220926150 - Charlie4 DNA MER1_type -7 1954 1749 1069 116 48 5 chr1 61267553 61267742 -220925922 - Charlie4 DNA MER1_type -1726 235 39 5913 92 36 73 chr1 61268212 61268566 -220925098 + L1PA12 LINE L1 4996 5361 -807 2852 6 0 0 chr1 61268566 61268884 -220924780 + AluYb8 SINE Alu 1 318 0 5913 92 36 73 chr1 61268884 61269012 -220924652 + L1PA12 LINE L1 5361 5492 -676 1949 107 10 49 chr1 61269012 61269320 -220924344 + AluSc SINE Alu 1 296 -13 5913 92 36 73 chr1 61269320 61270070 -220923594 + L1PA12 LINE L1 5492 6168 0 482 254 97 32 chr1 61270313 61270498 -220923166 - MIR SINE MIR -33 229 33 467 219 69 0 chr1 61270662 61270822 -220922842 + L1MC/D LINE L1 5196 5366 -780 483 188 20 10 chr1 61270920 61271021 -220922643 - MER5A DNA MER1_type -79 110 9 * 847 217 100 26 chr1 61271019 61271249 -220922415 + MIR SINE MIR 13 259 -3 447 330 66 0 chr1 61271266 61271463 -220922201 + L1MC/D LINE L1 5405 5614 -2194 228 67 0 0 chr1 61271471 61271501 -220922163 + (TG)n Simple_repeat Simple_repeat 2 31 0 2076 73 59 7 chr1 61271881 61272167 -220921497 - AluY SINE Alu -10 301 1 295 206 144 41 chr1 61272174 61272271 -220921393 - MIR SINE MIR -136 126 20 2353 71 0 0 chr1 61272609 61272904 -220920760 + AluY SINE Alu 1 295 -16 315 295 27 0 chr1 61272973 61273085 -220920579 + MIR3 SINE MIR 72 186 -22 1921 130 0 7 chr1 61273229 61273536 -220920128 - AluSx SINE Alu 0 306 2 287 309 14 0 chr1 61273612 61273723 -220919941 + L1MC/D LINE L1 5438 5550 -616 924 245 9 9 chr1 61273734 61273950 -220919714 + MIR SINE MIR 34 249 -13 435 254 127 46 chr1 61274273 61274293 -220919371 - MER117 DNA MER1_type 0 197 180 2168 78 257 6 chr1 61274293 61274651 -220919013 + LTR7 LTR ERV1 1 448 -2 435 254 127 46 chr1 61274651 61274803 -220918861 - MER117 DNA MER1_type -17 180 11 2314 78 0 3 chr1 61274964 61275257 -220918407 - AluSq SINE Alu -21 292 1 1282 217 17 10 chr1 61275270 61275565 -220918099 + LTR16C LTR ERVL 195 491 0 315 328 92 0 chr1 61275571 61275711 -220917953 - MIR3 SINE MIR -46 162 7 303 257 62 18 chr1 61276340 61276453 -220917211 + MIR SINE MIR 81 198 -64 276 306 45 108 chr1 61276860 61277193 -220916471 - L2 LINE L2 -62 3210 2899 445 265 30 60 chr1 61277945 61278145 -220915519 - MIR SINE MIR -49 213 20 2299 84 7 0 chr1 61278807 61279115 -220914549 + AluSx SINE Alu 1 310 -2 352 290 65 11 chr1 61279389 61279482 -220914182 + L2 LINE L2 3195 3292 -21 830 201 6 0 chr1 61279492 61279666 -220913998 + FRAM SINE Alu 1 175 -1 639 209 29 52 chr1 61279706 61279878 -220913786 - MIR SINE MIR -65 197 30 229 342 145 17 chr1 61279896 61280013 -220913651 + MIR SINE MIR 17 148 -60 357 212 20 0 chr1 61280740 61280839 -220912825 + L2 LINE L2 3010 3110 -162 180 255 0 0 chr1 61280940 61280987 -220912677 - L2 LINE L2 -70 3243 3197 301 302 9 9 chr1 61281480 61281596 -220912068 + (TG)n Simple_repeat Simple_repeat 1 116 0 210 192 0 0 chr1 61281611 61281663 -220912001 + (TG)n Simple_repeat Simple_repeat 2 53 0 499 298 70 12 chr1 61282183 61282398 -220911266 - MIR SINE MIR -43 219 1 641 261 37 84 chr1 61282780 61283079 -220910585 + L2 LINE L2 2939 3223 -49 192 77 0 0 chr1 61283101 61283127 -220910537 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 522 336 119 39 chr1 61283259 61283983 -220909681 - L3 LINE CR1 -6 1571 790 259 325 13 0 chr1 61284587 61284664 -220909000 - L3 LINE CR1 -91 1486 1409 226 158 195 37 chr1 61284707 61284789 -220908875 - MIR SINE MIR -71 137 43 226 295 106 20 chr1 61284801 61284950 -220908714 - MIR SINE MIR -62 146 28 316 206 110 0 chr1 61285908 61285981 -220907683 - L3 LINE CR1 -70 1507 1427 1298 153 0 0 chr1 61286010 61286219 -220907445 + AluJb SINE Alu 100 308 -4 256 314 172 24 chr1 61286386 61286555 -220907109 - MER117 DNA MER1_type 0 197 4 393 236 69 13 chr1 61286791 61286940 -220906724 - MIR SINE MIR -65 143 28 1602 168 21 14 chr1 61287015 61287300 -220906364 + AluJb SINE Alu 2 288 -24 23 0 0 0 chr1 61287304 61287327 -220906337 + AT_rich Low_complexity Low_complexity 1 23 0 2397 70 67 6 chr1 61287491 61287834 -220905830 + L1PA8 LINE L1 5806 6169 -3 317 285 82 58 chr1 61288191 61288482 -220905182 - L2 LINE L2 -171 3101 2804 1375 157 3 83 chr1 61288565 61288865 -220904799 - AluJo SINE Alu -24 288 13 1379 52 12 0 chr1 61289178 61289351 -220904313 + AluY SINE Alu 132 306 -5 213 304 98 11 chr1 61289650 61289742 -220903922 - MIR SINE MIR -62 146 47 398 270 163 41 chr1 61289754 61289950 -220903714 - MIR SINE MIR -4 258 39 8946 127 109 27 chr1 61289972 61291538 -220902126 + pTR5 LTR ERV1 742 2435 -3 2103 146 31 11 chr1 61291538 61291894 -220901770 + THE1B LTR MaLR 2 364 0 352 277 57 19 chr1 61291919 61292078 -220901586 - L2 LINE L2 -210 3062 2898 378 298 58 50 chr1 61292401 61292660 -220901004 - MIR SINE MIR -2 260 3 285 281 124 0 chr1 61293130 61293251 -220900413 - MIR3 SINE MIR -3 205 70 358 272 11 22 chr1 61293317 61293409 -220900255 + L1MC4 LINE L1 6613 6703 -1339 269 163 41 0 chr1 61293413 61293462 -220900202 - L1ME3 LINE L1 -20 6142 6092 226 154 0 0 chr1 61293465 61293504 -220900160 - L1MA10 LINE L1 -7 6327 6289 1999 139 0 0 chr1 61293511 61293820 -220899844 - AluSx SINE Alu -3 309 1 885 109 0 16 chr1 61293821 61293949 -220899715 - AluSq/x SINE Alu -185 127 2 1188 224 41 76 chr1 61293955 61293979 -220899685 - L1ME1 LINE L1 -38 6128 6105 1877 142 0 3 chr1 61293979 61294268 -220899396 + AluJo SINE Alu 2 289 -23 1188 224 41 76 chr1 61294268 61294770 -220898894 - L1ME1 LINE L1 -61 6105 5653 2032 126 0 40 chr1 61294771 61295096 -220898568 - AluSq SINE Alu -1 312 1 357 24 0 0 chr1 61295096 61295138 -220898526 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 2100 102 3 0 chr1 61295138 61295421 -220898243 - AluSp SINE Alu -29 284 1 192 40 0 0 chr1 61295427 61295452 -220898212 + (TA)n Simple_repeat Simple_repeat 2 26 0 935 151 0 0 chr1 61295455 61295601 -220898063 - FRAM SINE Alu -30 146 1 1060 169 48 0 chr1 61295604 61295793 -220897871 - L1ME LINE L1 -473 5760 5563 1646 168 0 18 chr1 61296006 61296286 -220897378 - AluJb SINE Alu -25 287 13 564 158 11 0 chr1 61296306 61296401 -220897263 - FLAM_A SINE Alu -11 131 36 1023 164 9 35 chr1 61296410 61296618 -220897046 - L1ME LINE L1 -682 5553 5350 7153 55 8 3 chr1 61296618 61298003 -220895661 - L1PA6 LINE L1 -2 6152 4761 1023 164 9 35 chr1 61298003 61298020 -220895644 - L1ME LINE L1 -885 5350 5334 1973 118 19 25 chr1 61298032 61298346 -220895318 - AluSx SINE Alu 0 312 1 2011 160 43 93 chr1 61298362 61298375 -220895289 - L1ME LINE L1 -874 5341 5329 2159 109 10 3 chr1 61298375 61298686 -220894978 - AluSp SINE Alu 0 313 1 2011 160 43 93 chr1 61298686 61298954 -220894710 - L1ME LINE L1 -886 5329 5097 1494 173 32 18 chr1 61298954 61299232 -220894432 - AluJo SINE Alu -30 282 1 2011 160 43 93 chr1 61299232 61299487 -220894177 - L1ME LINE L1 -1118 5097 4831 1826 147 10 17 chr1 61299496 61299796 -220893868 - AluJb SINE Alu -14 298 1 593 274 42 19 chr1 61299796 61300011 -220893653 - L1ME LINE L1 -1769 4446 4227 1013 123 0 0 chr1 61300018 61300211 -220893453 - AluSq SINE Alu 0 332 140 2576 173 33 67 chr1 61300211 61300353 -220893311 - L1ME LINE L1 -1971 4244 4099 2118 98 20 3 chr1 61300353 61300650 -220893014 + AluSx SINE Alu 1 302 -10 2576 173 33 67 chr1 61300650 61300849 -220892815 - L1ME LINE L1 -2116 4099 3895 2217 112 0 0 chr1 61300849 61301161 -220892503 - AluSx SINE Alu 0 312 1 2576 173 33 67 chr1 61301161 61301479 -220892185 - L1ME LINE L1 -2320 3895 3606 7016 167 80 67 chr1 61301480 61303131 -220890533 + MER52A LTR ERV1 1 1747 -8 293 207 0 35 chr1 61303145 61303203 -220890461 - L2 LINE L2 -2 3270 3215 2125 120 7 0 chr1 61303451 61303760 -220889904 - AluSp SINE Alu -2 311 1 1111 229 71 6 chr1 61303779 61304115 -220889549 - L1ME LINE L1 -2603 3612 3255 274 136 0 0 chr1 61304142 61304186 -220889478 - L1ME LINE L1 -3440 2775 2732 7877 112 45 12 chr1 61304242 61304292 -220889372 - HSMAR2 DNA Mariner -9 1293 1246 2247 68 0 0 chr1 61304292 61304596 -220889068 + AluY SINE Alu 1 304 0 7877 112 45 12 chr1 61304596 61305731 -220887933 - HSMAR2 DNA Mariner -56 1246 68 839 162 0 0 chr1 61305750 61305886 -220887778 + FRAM SINE Alu 20 155 -21 340 148 16 0 chr1 61305886 61305947 -220887717 - HSMAR2 DNA Mariner -1239 63 2 1126 211 4 0 chr1 61305972 61306219 -220887445 - L1ME LINE L1 -3523 2692 2445 1921 135 45 15 chr1 61306221 61306554 -220887110 - Tigger7 DNA MER2_type -2 2485 2143 569 195 28 2 chr1 61306552 61306771 -220886893 + Tigger7 DNA MER2_type 76 347 -2140 * 446 178 14 0 chr1 61306774 61306847 -220886817 - Tigger7 DNA MER2_type -265 74 1 1572 171 14 0 chr1 61306880 61307155 -220886509 - AluJb SINE Alu -33 279 1 2730 234 94 29 chr1 61307163 61308172 -220885492 - L1ME LINE L1 -3913 2483 1199 2085 139 0 0 chr1 61308172 61308481 -220885183 - AluSx SINE Alu -3 309 1 2730 234 94 29 chr1 61308481 61308946 -220884718 - L1ME LINE L1 -5197 1199 766 4746 171 50 73 chr1 61308955 61309019 -220884645 - L1MB8 LINE L1 -5 6173 6109 2090 100 7 0 chr1 61309019 61309324 -220884340 + AluSx SINE Alu 1 307 0 4746 171 50 73 chr1 61309324 61310113 -220883551 - L1MB8 LINE L1 -69 6109 5303 2182 106 7 0 chr1 61310113 61310416 -220883248 - AluSx SINE Alu -7 305 1 4746 171 50 73 chr1 61310416 61310652 -220883012 - L1MB8 LINE L1 -875 5303 5063 2098 109 0 7 chr1 61310652 61310955 -220882709 - AluSq SINE Alu -8 305 5 4746 171 50 73 chr1 61310955 61311194 -220882470 - L1MB8 LINE L1 -1115 5063 4900 1596 149 83 24 chr1 61311194 61311483 -220882181 + AluJo SINE Alu 1 306 -6 4746 171 50 73 chr1 61311483 61311555 -220882109 - L1MB8 LINE L1 -1278 4900 4828 2595 245 74 27 chr1 61311564 61312307 -220881357 - L1ME LINE L1 -5571 825 48 1024 198 59 76 chr1 61312337 61312600 -220881064 - MLT1A2 LTR MaLR 0 390 167 2172 104 3 0 chr1 61312600 61312899 -220880765 - AluSx SINE Alu -12 300 1 1024 198 59 76 chr1 61312899 61313064 -220880600 - MLT1A2 LTR MaLR -223 167 1 2289 60 0 48 chr1 61313538 61313854 -220879810 + AluY SINE Alu 1 301 -10 541 312 195 9 chr1 61314174 61314507 -220879157 - L3 LINE CR1 -24 1553 1159 262 324 65 6 chr1 61314820 61314935 -220878729 + L2 LINE L2 1977 2107 -1207 2023 116 3 3 chr1 61314935 61315227 -220878437 - AluJb SINE Alu -20 292 1 262 324 65 6 chr1 61315227 61315281 -220878383 + L2 LINE L2 2107 2156 -1158 197 350 100 0 chr1 61315558 61315658 -220878006 + L2 LINE L2 3160 3269 -3 332 293 133 70 chr1 61315851 61316281 -220877383 + L2 LINE L2 2815 3271 -1 268 111 0 14 chr1 61316289 61316341 -220877323 - MLT2D LTR ERVL 0 397 359 2046 183 19 6 chr1 61316406 61316767 -220876897 - MLT2D LTR ERVL -48 366 1 240 163 143 0 chr1 61316768 61316817 -220876847 + MIR SINE MIR 93 148 -60 361 264 138 56 chr1 61316912 61316958 -220876706 - MIR SINE MIR -67 141 100 2344 93 0 6 chr1 61316958 61317270 -220876394 - AluSq SINE Alu -3 310 1 2121 107 0 3 chr1 61317280 61317580 -220876084 - AluSx SINE Alu -13 299 1 1711 146 17 0 chr1 61317582 61317869 -220875795 - AluJo SINE Alu -18 294 3 361 264 138 56 chr1 61317869 61317975 -220875689 - MIR SINE MIR -116 92 31 417 304 0 34 chr1 61319342 61319636 -220874028 + (TGG)n Simple_repeat Simple_repeat 1 283 0 1375 164 68 85 chr1 61320246 61320384 -220873280 - MLT1D LTR MaLR -145 360 221 1615 158 11 22 chr1 61320384 61320662 -220873002 - AluJo SINE Alu -15 297 23 1375 164 68 85 chr1 61320662 61320682 -220872982 - MLT1D LTR MaLR -284 221 202 1673 159 14 17 chr1 61320682 61320977 -220872687 - AluJo SINE Alu -18 294 1 1375 164 68 85 chr1 61320977 61321183 -220872481 - MLT1D LTR MaLR -303 202 1 306 265 107 43 chr1 61321252 61321486 -220872178 + L2 LINE L2 1706 1954 -1360 725 294 94 44 chr1 61321612 61322017 -220871647 + L2 LINE L2 2884 3308 -5 1837 112 31 10 chr1 61322118 61322412 -220871252 + AluSx SINE Alu 1 300 -12 326 273 27 27 chr1 61322415 61322525 -220871139 - MER5A DNA MER1_type -79 110 1 2336 80 0 0 chr1 61323223 61323522 -220870142 - AluSx SINE Alu -13 299 1 1617 105 66 16 chr1 61323728 61323986 -220869678 + L1PA15 LINE L1 5891 6161 -4 1015 152 149 74 chr1 61324143 61324294 -220869370 - MER33 DNA MER1_type -2261 324 186 2169 103 0 3 chr1 61324294 61324586 -220869078 - AluSc SINE Alu -18 291 1 1015 152 149 74 chr1 61324586 61324750 -220868914 - MER33 DNA MER1_type -2399 186 1 6579 119 35 52 chr1 61324779 61325013 -220868651 + Tigger1 DNA MER2_type 1305 1541 -877 1826 135 24 10 chr1 61325013 61325302 -220868362 + AluJb SINE Alu 1 293 -19 6579 119 35 52 chr1 61325302 61325394 -220868270 + Tigger1 DNA MER2_type 1541 1633 -785 2395 96 0 0 chr1 61325394 61325706 -220867958 + AluSx SINE Alu 1 312 0 6579 119 35 52 chr1 61325706 61326508 -220867156 + Tigger1 DNA MER2_type 1633 2415 -3 587 264 91 19 chr1 61327291 61327499 -220866165 + MIR SINE MIR 40 262 0 2409 121 48 31 chr1 61327630 61328086 -220865578 - L1MB3 LINE L1 0 6183 5720 23 0 0 0 chr1 61328935 61328958 -220864706 + AT_rich Low_complexity Low_complexity 1 23 0 2311 62 26 13 chr1 61328986 61329292 -220864372 + AluY SINE Alu 1 310 -1 1952 83 69 3 chr1 61329476 61329765 -220863899 + AluSg SINE Alu 1 308 -2 862 118 0 22 chr1 61329775 61329911 -220863753 + AluJb SINE Alu 1 133 -179 826 234 67 5 chr1 61329915 61330109 -220863555 + MIR SINE MIR 53 256 -6 375 291 99 23 chr1 61331188 61331360 -220862304 - MIR SINE MIR -71 191 7 253 329 0 12 chr1 61332873 61332955 -220860709 + MIR3 SINE MIR 117 197 -11 370 152 0 30 chr1 61333234 61333300 -220860364 + L2 LINE L2 3246 3309 -4 2348 53 3 10 chr1 61333334 61333633 -220860031 - AluY SINE Alu -14 297 1 349 303 16 37 chr1 61333642 61333778 -220859886 - MIR SINE MIR -62 146 15 452 270 92 43 chr1 61334086 61334271 -220859393 + MIR3 SINE MIR 6 199 -9 1451 175 82 7 chr1 61334561 61334841 -220858823 + AluJo SINE Alu 1 301 -11 1670 100 12 4 chr1 61335623 61335872 -220857792 + AluSq SINE Alu 47 297 -16 2196 103 3 3 chr1 61335875 61336187 -220857477 + AluSp SINE Alu 1 312 -1 243 0 0 0 chr1 61336828 61336855 -220856809 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 427 268 143 30 chr1 61338150 61338381 -220855283 + MIR SINE MIR 6 262 0 2539 40 0 0 chr1 61338833 61339132 -220854532 + AluY SINE Alu 1 299 -12 2017 128 3 3 chr1 61339163 61339461 -220854203 + AluSq SINE Alu 1 298 -15 233 184 231 41 chr1 61339508 61339655 -220854009 - L1ME4a LINE L1 -4 6117 5943 1058 264 23 38 chr1 61339665 61340010 -220853654 - L1ME4a LINE L1 -286 5835 5496 2085 102 7 3 chr1 61340728 61341023 -220852641 + AluSq SINE Alu 1 296 -17 337 271 71 35 chr1 61341056 61341102 -220852562 + L1MC4a LINE L1 5784 5827 -1981 2185 90 0 10 chr1 61341102 61341402 -220852262 + AluSc SINE Alu 1 297 -12 337 271 71 35 chr1 61341402 61341525 -220852139 + L1MC4a LINE L1 5827 5959 -1849 195 231 0 132 chr1 61342945 61343036 -220850628 + L2 LINE L2 2945 3023 -249 2292 89 0 3 chr1 61343036 61343338 -220850326 + AluSx SINE Alu 1 301 -11 508 219 47 56 chr1 61343362 61343577 -220850087 + L1ME4a LINE L1 5643 5855 -266 614 311 84 50 chr1 61344461 61344818 -220848846 + L2 LINE L2 2903 3271 -1 698 296 90 5 chr1 61346630 61346853 -220846811 - MIR SINE MIR -1 261 20 201 259 24 24 chr1 61347610 61347695 -220845969 + CT-rich Low_complexity Low_complexity 2 86 0 208 268 27 18 chr1 61348113 61348225 -220845439 + C-rich Low_complexity Low_complexity 4 116 0 237 292 11 0 chr1 61348390 61348479 -220845185 + G-rich Low_complexity Low_complexity 5 94 0 211 75 0 75 chr1 61348895 61348935 -220844729 + (CGGGG)n Simple_repeat Simple_repeat 5 41 0 1816 126 17 0 chr1 61350104 61350398 -220843266 - AluSq SINE Alu -14 299 1 768 152 14 43 chr1 61350398 61350536 -220843128 - AluSq/x SINE Alu -177 135 2 1802 155 7 3 chr1 61350840 61351131 -220842533 + AluJb SINE Alu 2 293 -19 385 240 246 45 chr1 61351188 61351367 -220842297 - MER20 DNA MER1_type -4 215 1 396 280 42 48 chr1 61351740 61351908 -220841756 - L3 LINE CR1 -372 1205 1039 1219 288 143 37 chr1 61352090 61352175 -220841489 - L3 LINE CR1 -595 982 907 1467 227 62 0 chr1 61352175 61352496 -220841168 - MER58B DNA MER1_type 0 341 1 1219 288 143 37 chr1 61352496 61353137 -220840527 - L3 LINE CR1 -670 907 179 724 136 0 102 chr1 61353371 61353468 -220840196 + AluJo SINE Alu 1 80 -222 2325 83 7 0 chr1 61353468 61353757 -220839907 + AluSq SINE Alu 1 291 -22 724 136 0 102 chr1 61353757 61353806 -220839858 + AluJo SINE Alu 80 132 -170 291 143 0 0 chr1 61353813 61353855 -220839809 - Alu SINE Alu -258 50 9 1074 188 10 19 chr1 61353855 61354062 -220839602 + AluJo SINE Alu 107 311 -1 541 246 121 18 chr1 61354104 61354434 -220839230 - L1MEc LINE L1 -3977 2419 2056 2204 127 0 3 chr1 61355352 61355651 -220838013 - AluSg SINE Alu -12 298 1 2594 56 7 0 chr1 61355660 61355965 -220837699 - AluSp SINE Alu -4 309 3 235 310 101 13 chr1 61356046 61356204 -220837460 - MIR3 SINE MIR 0 208 37 192 217 0 0 chr1 61356487 61356533 -220837131 + (CATA)n Simple_repeat Simple_repeat 3 48 0 217 283 8 132 chr1 61356576 61356774 -220836890 - MIR3 SINE MIR -54 154 16 2075 124 7 7 chr1 61357343 61357634 -220836030 + AluSx SINE Alu 1 291 -21 588 118 0 0 chr1 61357810 61357895 -220835769 + FLAM_A SINE Alu 44 128 -14 263 218 23 83 chr1 61358075 61358208 -220835456 + MIR SINE MIR 82 206 -56 1293 110 0 0 chr1 61358296 61358460 -220835204 - AluSg/x SINE Alu -15 295 132 2078 103 0 87 chr1 61358460 61358781 -220834883 - AluSg SINE Alu -17 293 1 29 60 0 0 chr1 61358870 61358920 -220834744 + AT_rich Low_complexity Low_complexity 1 50 0 768 148 0 63 chr1 61358988 61359130 -220834534 + FLAM_C SINE Alu 1 133 0 2155 149 16 92 chr1 61359158 61359478 -220834186 - L1MB8 LINE L1 -5 6173 5830 1881 108 4 0 chr1 61359478 61359727 -220833937 - AluSc SINE Alu -59 250 1 1905 188 0 0 chr1 61359735 61360044 -220833620 - AluSx SINE Alu -3 309 1 2155 149 16 92 chr1 61360044 61360204 -220833460 - L1MB8 LINE L1 -355 5823 5721 * 4561 227 48 31 chr1 61360200 61361327 -220832337 + L1ME2 LINE L1 1306 2412 -3803 2532 65 3 0 chr1 61361327 61361633 -220832031 + AluY SINE Alu 1 307 -4 4561 227 48 31 chr1 61361633 61361905 -220831759 + L1ME2 LINE L1 2412 2678 -3537 1762 158 0 4 chr1 61361905 61362178 -220831486 + AluJb SINE Alu 11 282 -30 4561 227 48 31 chr1 61362178 61362409 -220831255 + L1ME2 LINE L1 2678 2904 -3311 1854 138 64 0 chr1 61362409 61362691 -220830973 - AluSx SINE Alu -12 300 1 4561 227 48 31 chr1 61362691 61363367 -220830297 + L1ME2 LINE L1 2904 3764 -2451 1055 168 50 0 chr1 61363368 61363570 -220830094 + L1ME2 LINE L1 5613 5824 -409 877 214 50 10 chr1 61363615 61363816 -220829848 + L1ME2 LINE L1 6025 6233 0 216 274 81 16 chr1 61363926 61364050 -220829614 - L2 LINE L2 -9 3304 3173 212 330 0 78 chr1 61364174 61364289 -220829375 - L2 LINE L2 -338 2975 2870 23 0 0 0 chr1 61364737 61364760 -220828904 + AT_rich Low_complexity Low_complexity 1 23 0 1315 253 92 40 chr1 61365255 61365733 -220827931 - LTR33 LTR ERVL 0 521 19 444 299 160 5 chr1 61365818 61366012 -220827652 + MIR SINE MIR 29 252 -10 217 349 0 37 chr1 61366527 61366636 -220827028 + MIR SINE MIR 47 151 -111 946 322 79 55 chr1 61366800 61367621 -220826043 + HAL1 LINE L1 37 877 -1630 389 219 147 123 chr1 61367615 61367735 -220825929 + L1MC5 LINE L1 7308 7424 -537 * 1821 168 0 20 chr1 61367735 61368038 -220825626 + AluJo SINE Alu 1 297 -15 389 219 147 123 chr1 61368038 61368322 -220825342 + L1MC5 LINE L1 7424 7700 -261 1645 180 0 21 chr1 61368322 61368611 -220825053 + AluJb SINE Alu 14 296 -16 389 219 147 123 chr1 61368611 61368662 -220825002 + L1MC5 LINE L1 7700 7748 -213 1942 114 86 4 chr1 61368662 61368942 -220824722 - AluSx SINE Alu -9 303 1 389 219 147 123 chr1 61368942 61369066 -220824598 + L1MC5 LINE L1 7748 7906 -55 2485 85 0 16 chr1 61369066 61369382 -220824282 - AluY SINE Alu 0 311 1 389 219 147 123 chr1 61369382 61369398 -220824266 + L1MC5 LINE L1 7906 7920 -41 349 262 85 0 chr1 61369407 61369548 -220824116 + HAL1 LINE L1 2012 2164 -343 2483 69 0 3 chr1 61369902 61370206 -220823458 - AluY SINE Alu -8 303 1 21 57 0 0 chr1 61370493 61370528 -220823136 + AT_rich Low_complexity Low_complexity 1 35 0 404 291 209 39 chr1 61371795 61372259 -220821405 - L1ME4a LINE L1 -32 6089 5547 2385 90 3 0 chr1 61372349 61372648 -220821016 - AluSp SINE Alu -13 300 1 624 147 138 0 chr1 61372670 61372779 -220820885 + AluJb SINE Alu 3 126 -186 1890 153 7 0 chr1 61373583 61373870 -220819794 - AluJb SINE Alu -23 289 1 655 174 146 14 chr1 61373931 61374075 -220819589 - FRAM SINE Alu -13 163 1 1119 210 89 104 chr1 61374099 61374664 -220819000 + L1MC4 LINE L1 6636 7176 -866 1810 162 0 29 chr1 61374664 61374972 -220818692 + AluJo SINE Alu 3 301 -11 1119 210 89 104 chr1 61374972 61375052 -220818612 + L1MC4 LINE L1 7176 7256 -786 720 210 93 77 chr1 61375104 61375404 -220818260 - MLT1H LTR MaLR 0 549 245 2176 117 3 3 chr1 61375622 61375920 -220817744 + AluSq SINE Alu 1 298 -15 397 187 71 97 chr1 61375977 61376132 -220817532 + L1MC5 LINE L1 7249 7399 -562 545 305 56 42 chr1 61376143 61376428 -220817236 + MLT1I LTR MaLR 3 291 -118 650 211 0 8 chr1 61376602 61376725 -220816939 + MLT1I LTR MaLR 286 407 -2 255 244 84 120 chr1 61376725 61376915 -220816749 + L1MC4 LINE L1 7509 7691 -351 2298 106 0 3 chr1 61376915 61377217 -220816447 - AluSq SINE Alu -12 301 1 255 244 84 120 chr1 61377217 61377251 -220816413 + L1MC4 LINE L1 7691 7725 -317 329 267 69 55 chr1 61377373 61377575 -220816089 + L1MC5 LINE L1 7716 7920 -41 2247 103 0 7 chr1 61377601 61377901 -220815763 - AluSq SINE Alu -15 298 1 1857 150 27 7 chr1 61378565 61378858 -220814806 - AluJb SINE Alu -13 299 1 434 264 14 82 chr1 61378978 61379186 -220814478 + L2 LINE L2 2932 3125 -188 612 242 22 22 chr1 61379434 61379616 -220814048 + L2 LINE L2 3132 3313 0 448 260 51 34 chr1 61380032 61380209 -220813455 + L1ME LINE L1 5561 5740 -381 180 125 0 0 chr1 61380273 61380305 -220813359 + (TA)n Simple_repeat Simple_repeat 1 32 0 1347 215 72 39 chr1 61380742 61381116 -220812548 - MLT1B LTR MaLR 0 432 1 2072 193 28 39 chr1 61381343 61381800 -220811864 - LTR16A1 LTR ERVL -5 452 1 1093 201 0 0 chr1 61381801 61381990 -220811674 + MER5A DNA MER1_type 1 189 0 211 300 65 125 chr1 61382048 61382401 -220811263 + L2 LINE L2 2887 3218 -54 342 267 254 0 chr1 61382851 61383016 -220810648 - MIR SINE MIR 0 262 56 * 640 199 85 35 chr1 61383003 61383204 -220810460 + MIR SINE MIR 21 231 -31 757 133 25 8 chr1 61383217 61383337 -220810327 - AluSg/x SINE Alu -23 287 166 2306 110 0 0 chr1 61385328 61385627 -220808037 - AluSx SINE Alu -13 299 1 2240 98 7 7 chr1 61385642 61385939 -220807725 - AluSx SINE Alu -3 309 13 679 237 29 0 chr1 61386279 61386418 -220807246 + MER58B DNA MER1_type 199 341 0 2542 79 0 0 chr1 61386515 61386819 -220806845 - AluSg SINE Alu -6 304 1 2452 88 3 0 chr1 61386824 61387131 -220806533 - AluSp SINE Alu -5 308 1 209 167 0 0 chr1 61387750 61387786 -220805878 + MIR SINE MIR 84 119 -89 2384 90 10 10 chr1 61387807 61388119 -220805545 + AluSx SINE Alu 1 312 0 411 258 22 45 chr1 61388256 61388435 -220805229 - MIR SINE MIR -52 156 3 224 273 13 26 chr1 61388804 61388881 -220804783 - MIR SINE MIR -110 98 23 287 269 255 0 chr1 61388905 61389050 -220804614 - MER5A DNA MER1_type 0 189 8 658 225 98 12 chr1 61389065 61389238 -220804426 + MER5A DNA MER1_type 1 188 -1 1931 142 10 29 chr1 61389286 61389595 -220804069 + AluJb SINE Alu 1 303 -9 381 304 105 20 chr1 61390424 61390574 -220803090 - MIR3 SINE MIR -60 148 14 443 285 58 0 chr1 61390576 61390713 -220802951 + MIR SINE MIR 115 259 -3 2879 220 102 88 chr1 61390795 61390902 -220802762 - MER45C DNA AcHobo -628 953 849 2261 89 27 0 chr1 61390902 61391194 -220802470 - AluSx SINE Alu -12 300 1 2879 220 102 88 chr1 61391194 61392026 -220801638 - MER45C DNA AcHobo -732 849 1 574 328 116 20 chr1 61392278 61392784 -220800880 - L2 LINE L2 -2 3311 2762 1164 159 0 0 chr1 61392836 61393006 -220800658 - FAM SINE Alu 0 49 1 332 263 66 56 chr1 61393509 61393633 -220800031 - L2 LINE L2 -594 2720 2592 1648 183 0 47 chr1 61393633 61393950 -220799714 + AluJo SINE Alu 3 304 -8 332 263 66 56 chr1 61393950 61394023 -220799641 - L2 LINE L2 -722 2592 2521 2253 123 0 0 chr1 61394137 61394439 -220799225 - AluSx SINE Alu -10 302 1 1253 149 48 0 chr1 61394879 61395087 -220798577 + AluJo SINE Alu 87 304 -8 185 94 31 0 chr1 61395654 61395686 -220797978 + (TG)n Simple_repeat Simple_repeat 1 33 0 501 270 101 0 chr1 61395746 61395894 -220797770 + MIR3 SINE MIR 16 178 -30 2431 93 0 0 chr1 61395997 61396298 -220797366 - AluSx SINE Alu -11 301 1 195 315 60 60 chr1 61396302 61396569 -220797095 + L2 LINE L2 2695 2961 -353 1674 193 3 10 chr1 61396879 61397190 -220796474 - AluJb SINE Alu -3 309 1 2197 108 0 0 chr1 61397249 61397565 -220796099 - AluSx SINE Alu 0 318 3 242 375 72 29 chr1 61397880 61398088 -220795576 + L2 LINE L2 2958 3174 -98 2136 151 0 0 chr1 61398243 61398555 -220795109 + AluJb SINE Alu 1 312 0 2193 110 0 10 chr1 61399326 61399618 -220794046 - AluSg SINE Alu -21 289 1 351 314 42 94 chr1 61399626 61400008 -220793656 - L2 LINE L2 -9 3263 2902 2288 106 0 0 chr1 61401004 61401305 -220792359 - AluSx SINE Alu -11 301 1 612 315 49 60 chr1 61401440 61401805 -220791859 - L2 LINE L2 -54 3218 2858 1265 168 48 34 chr1 61401828 61402119 -220791545 - AluJo SINE Alu -17 295 1 2222 94 3 0 chr1 61402169 61402467 -220791197 - AluSx SINE Alu -13 299 1 1022 279 66 78 chr1 61402470 61402997 -220790667 - HERVL LTR ERVL -738 5026 4506 191 239 254 0 chr1 61403034 61403101 -220790563 + L3 LINE CR1 178 261 -1316 490 316 42 32 chr1 61403138 61403451 -220790213 - HERVL LTR ERVL -5050 604 289 234 317 28 49 chr1 61403762 61403904 -220789760 - LTR16C LTR ERVL -54 437 299 297 201 50 30 chr1 61404311 61404420 -220789244 + MIR SINE MIR 98 208 -54 23 0 0 0 chr1 61405104 61405127 -220788537 + GC_rich Low_complexity Low_complexity 1 23 0 621 245 120 23 chr1 61405196 61405412 -220788252 - MIR SINE MIR -24 238 2 277 320 0 0 chr1 61406121 61406196 -220787468 - L2 LINE L2 -9 3263 3189 332 303 92 32 chr1 61406265 61406450 -220787214 - L2 LINE L2 -2 3311 3116 201 39 0 0 chr1 61406510 61406536 -220787128 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1955 126 0 0 chr1 61406537 61406815 -220786849 - AluSg SINE Alu -32 278 1 856 264 88 9 chr1 61406829 61407045 -220786619 - MIR SINE MIR -7 255 23 1302 304 75 13 chr1 61407112 61407381 -220786283 + L2 LINE L2 2493 2744 -569 2175 91 23 7 chr1 61407381 61407688 -220785976 + AluSx SINE Alu 1 312 0 1302 304 75 13 chr1 61407688 61407964 -220785700 + L2 LINE L2 2744 3074 -239 213 322 22 22 chr1 61408076 61408166 -220785498 - L2 LINE L2 -455 2859 2770 303 288 152 51 chr1 61408473 61408730 -220784934 + L2 LINE L2 2871 3153 -119 1006 131 25 6 chr1 61408752 61408912 -220784752 - L1MA3 LINE L1 0 6305 6143 2001 139 3 0 chr1 61408912 61409222 -220784442 - AluSx SINE Alu -1 311 1 1136 95 0 24 chr1 61409236 61409404 -220784260 - AluSc SINE Alu -12 297 134 485 298 55 22 chr1 61409557 61409738 -220783926 - MIR SINE MIR -64 198 12 442 310 13 13 chr1 61409989 61410147 -220783517 + L1ME4a LINE L1 5499 5656 -465 339 190 0 0 chr1 61410342 61410400 -220783264 + L2 LINE L2 3256 3313 0 255 246 0 0 chr1 61410435 61410492 -220783172 + L1ME4a LINE L1 5978 6034 -87 934 190 0 17 chr1 61410493 61410672 -220782992 - AluJb SINE Alu 0 312 137 2101 113 7 3 chr1 61410703 61411005 -220782659 - AluSx SINE Alu -9 303 1 471 292 47 42 chr1 61411124 61411316 -220782348 - MIR SINE MIR -65 197 5 254 306 231 0 chr1 61411704 61411812 -220781852 - L2 LINE L2 -21 3251 3119 285 318 60 85 chr1 61411905 61412002 -220781662 - L3 LINE CR1 -13 1564 1473 1981 148 0 3 chr1 61412002 61412313 -220781351 + AluJb SINE Alu 1 310 -2 285 318 60 85 chr1 61412313 61412416 -220781248 - L3 LINE CR1 -104 1473 1369 8195 117 14 35 chr1 61412419 61413486 -220780178 - L1PA11 LINE L1 -3 6171 5102 2129 89 62 0 chr1 61413486 61413778 -220779886 - AluSg SINE Alu 0 310 1 8195 117 14 35 chr1 61413778 61414807 -220778857 - L1PA11 LINE L1 -1072 5102 4053 1072 221 5 0 chr1 61414813 61415021 -220778643 - L1PA12 LINE L1 -7360 221 13 1823 161 3 0 chr1 61415368 61415659 -220778005 + AluJo SINE Alu 2 293 -19 194 208 21 21 chr1 61415752 61415800 -220777864 - MIR SINE MIR -73 135 88 1243 181 150 15 chr1 61416679 61416945 -220776719 + AluJo SINE Alu 1 302 0 384 284 95 35 chr1 61417265 61417434 -220776230 - MIR SINE MIR -20 242 64 248 284 137 11 chr1 61417557 61417652 -220776012 + L2 LINE L2 3151 3257 -15 232 265 96 24 chr1 61417640 61417723 -220775941 - L2 LINE L2 -14 3258 3170 * 373 304 137 54 chr1 61417744 61417905 -220775759 - MIR SINE MIR -7 255 72 1052 209 19 27 chr1 61417905 61418168 -220775496 - MIR SINE MIR 0 262 2 373 304 137 54 chr1 61418168 61418210 -220775454 - MIR SINE MIR -190 72 35 289 249 198 30 chr1 61418367 61418604 -220775060 + L1MC4a LINE L1 5123 5399 -747 1141 255 95 7 chr1 61418698 61419229 -220774435 - L2 LINE L2 0 3313 2719 1823 145 0 7 chr1 61419231 61419528 -220774136 - AluJo SINE Alu -17 295 1 517 241 116 61 chr1 61419571 61419973 -220773691 + L1MC4a LINE L1 5494 5860 -310 23 0 0 29 chr1 61419973 61419988 -220773676 + AT_rich Low_complexity Low_complexity 1 15 -18 2065 111 3 3 chr1 61419988 61420276 -220773388 - AluSx SINE Alu -24 288 1 23 0 0 29 chr1 61420276 61420294 -220773370 + AT_rich Low_complexity Low_complexity 15 33 0 22 80 0 0 chr1 61420350 61420400 -220773264 + AT_rich Low_complexity Low_complexity 1 50 0 220 351 35 0 chr1 61420553 61420667 -220772997 - L2 LINE L2 -481 2833 2716 806 109 0 0 chr1 61420931 61421041 -220772623 - AluJb SINE Alu -194 118 9 970 180 12 0 chr1 61421059 61421226 -220772438 - FAM SINE Alu -3 172 4 415 269 207 17 chr1 61421234 61421644 -220772020 + L2 LINE L2 2749 3239 -33 261 319 66 47 chr1 61422276 61422533 -220771131 + L1MC4a LINE L1 5770 6031 -1777 228 57 0 0 chr1 61422647 61422682 -220770982 - L1MA1 LINE L1 0 6302 6268 225 0 0 0 chr1 61422730 61422755 -220770909 + (CA)n Simple_repeat Simple_repeat 1 25 0 453 128 128 0 chr1 61423577 61423663 -220770001 - L1MB4 LINE L1 -1 6179 6083 1884 142 3 19 chr1 61423724 61424035 -220769629 - AluJb SINE Alu -6 306 1 1960 127 6 19 chr1 61424285 61424600 -220769064 + AluJo SINE Alu 1 311 -1 2047 87 42 0 chr1 61424602 61424888 -220768776 + AluSg SINE Alu 1 298 -12 928 251 46 8 chr1 61425172 61425411 -220768253 + MIR SINE MIR 15 262 0 270 0 0 0 chr1 61425570 61425600 -220768064 + (TG)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr1 61425599 61425629 -220768035 + (GA)n Simple_repeat Simple_repeat 1 30 0 183 171 114 0 chr1 61425700 61425735 -220767929 + MIR SINE MIR 34 72 -190 374 319 68 48 chr1 61426073 61426215 -220767449 + MIR SINE MIR 48 197 -65 607 247 63 43 chr1 61426215 61426470 -220767194 - MIR SINE MIR -1 261 2 374 319 68 48 chr1 61426470 61426534 -220767130 + MIR SINE MIR 197 258 -4 2510 24 27 0 chr1 61427097 61427393 -220766271 + AluY SINE Alu 1 304 -7 382 222 0 25 chr1 61427627 61427708 -220765956 - L2 LINE L2 0 3313 3235 1579 163 0 61 chr1 61428661 61428974 -220764690 + AluSg SINE Alu 1 294 -16 916 204 128 53 chr1 61429137 61429456 -220764208 + MER2 DNA MER2_type 1 343 -1 656 304 60 5 chr1 61429718 61429935 -220763729 + MIR SINE MIR 21 249 -13 1763 168 0 7 chr1 61430719 61431022 -220762642 + AluSx SINE Alu 1 301 -11 254 261 98 0 chr1 61431190 61431293 -220762371 + MIR SINE MIR 79 152 -56 314 299 158 8 chr1 61431798 61431925 -220761739 + MIR3 SINE MIR 3 148 -60 582 269 151 5 chr1 61432454 61432666 -220760998 + MIR SINE MIR 20 262 0 195 208 62 0 chr1 61432691 61432739 -220760925 - MIR3 SINE MIR 0 208 158 1871 141 7 0 chr1 61432739 61433029 -220760635 - AluSx SINE Alu -20 292 1 460 190 0 17 chr1 61433049 61433165 -220760499 + CT-rich Low_complexity Low_complexity 3 116 0 567 295 5 3 chr1 61433193 61433344 -220760320 - MIR3 SINE MIR -43 165 37 236 270 135 22 chr1 61434097 61434186 -220759478 - L2 LINE L2 -5 3308 3210 757 278 48 5 chr1 61434195 61434404 -220759260 + MIR SINE MIR 1 218 -44 2255 95 0 9 chr1 61435063 61435379 -220758285 - AluSq SINE Alu 0 313 1 378 271 115 16 chr1 61435543 61435665 -220757999 + L2 LINE L2 3139 3272 0 1653 169 0 4 chr1 61435835 61436108 -220757556 + AluJb SINE Alu 11 282 -30 471 285 122 12 chr1 61436125 61436297 -220757367 + MIR SINE MIR 57 247 -15 435 195 62 26 chr1 61436591 61436704 -220756960 - MIR3 SINE MIR -6 202 86 2249 93 0 3 chr1 61436760 61437061 -220756603 - AluSg SINE Alu -10 300 1 246 284 80 11 chr1 61437129 61437217 -220756447 - MIR SINE MIR -70 138 45 1936 220 117 31 chr1 61437410 61437956 -220755708 - MLT1E LTR MaLR 0 593 1 1914 170 58 0 chr1 61438931 61439260 -220754404 - MER7A DNA MER2_type 0 346 1 339 366 65 30 chr1 61439678 61439910 -220753754 + L2 LINE L2 2981 3220 -52 199 280 20 0 chr1 61440040 61440090 -220753574 - L2 LINE L2 -73 3199 3149 2051 127 0 7 chr1 61440489 61440788 -220752876 - AluSx SINE Alu -10 302 6 261 237 72 31 chr1 61441099 61441196 -220752468 + MIR SINE MIR 89 189 -73 368 289 70 0 chr1 61441250 61441392 -220752272 + MIR3 SINE MIR 42 193 -15 267 324 46 19 chr1 61442112 61442220 -220751444 + MIR SINE MIR 31 141 -121 276 279 0 15 chr1 61442361 61442429 -220751235 - MIR3 SINE MIR -133 75 9 1743 162 7 0 chr1 61442445 61442741 -220750923 - AluJb SINE Alu -14 298 1 221 171 24 0 chr1 61442911 61442952 -220750712 + CT-rich Low_complexity Low_complexity 1 42 0 1312 208 57 11 chr1 61442952 61443231 -220750433 - AluSg SINE Alu -18 292 1 866 173 62 0 chr1 61443593 61443755 -220749909 - AluJb SINE Alu -6 306 135 2212 107 0 7 chr1 61443908 61444216 -220749448 - AluSx SINE Alu -6 306 1 916 189 44 0 chr1 61444306 61444486 -220749178 + MER58A DNA MER1_type 37 224 0 1826 133 6 48 chr1 61444541 61444856 -220748808 + AluSx SINE Alu 1 302 -10 394 318 95 40 chr1 61445175 61445427 -220748237 - L3 LINE CR1 -98 1479 1214 282 308 15 75 chr1 61446057 61446190 -220747474 - L2 LINE L2 0 3313 3189 * 569 304 130 19 chr1 61446185 61446507 -220747157 + L2 LINE L2 2613 2970 -344 2372 63 3 0 chr1 61446507 61446851 -220746813 - AluY SINE Alu 0 311 1 1706 155 0 14 chr1 61446851 61447142 -220746522 - AluJb SINE Alu -11 301 15 556 257 97 29 chr1 61447440 61447646 -220746018 - L2 LINE L2 0 3313 3094 306 245 122 31 chr1 61447698 61447796 -220745868 + L2 LINE L2 3136 3242 -30 240 303 40 0 chr1 61448057 61448156 -220745508 - MIR SINE MIR -61 147 45 2043 135 0 0 chr1 61449025 61449321 -220744343 - AluSx SINE Alu -16 296 1 2006 115 26 0 chr1 61449339 61449517 -220744147 - AluSq SINE Alu -1 312 121 189 0 0 0 chr1 61449517 61449538 -220744126 + (TG)n Simple_repeat Simple_repeat 2 22 0 2006 115 26 0 chr1 61449538 61449663 -220744001 - AluSq SINE Alu -192 121 1 355 315 108 61 chr1 61449670 61449949 -220743715 + L2 LINE L2 2977 3268 -4 2339 74 0 22 chr1 61450872 61451184 -220742480 + AluY SINE Alu 1 305 -6 318 293 86 57 chr1 61451197 61451373 -220742291 + L2 LINE L2 2812 3000 -272 873 176 12 115 chr1 61451373 61451617 -220742047 + MER20 DNA MER1_type 1 219 0 318 293 86 57 chr1 61451617 61451701 -220741963 + L2 LINE L2 3000 3080 -192 2291 74 7 13 chr1 61452062 61452371 -220741293 - AluY SINE Alu -4 307 1 833 157 0 8 chr1 61452374 61452508 -220741156 - AluJb SINE Alu -179 133 1 487 313 73 0 chr1 61452812 61452962 -220740702 - MIR SINE MIR -13 249 89 325 363 94 43 chr1 61453333 61454005 -220739659 + L2 LINE L2 2561 3257 -15 1850 178 0 7 chr1 61454100 61454404 -220739260 - AluJo SINE Alu -10 302 1 851 210 149 20 chr1 61454779 61454974 -220738690 - MER58A DNA MER1_type -4 220 1 261 338 58 30 chr1 61455451 61455651 -220738013 - MIR SINE MIR -52 210 3 1019 179 16 21 chr1 61456183 61456373 -220737291 + MER5A DNA MER1_type 1 189 0 1061 89 0 0 chr1 61456377 61456512 -220737152 + AluSq/x SINE Alu 1 135 -178 2061 142 0 7 chr1 61456512 61456821 -220736843 + AluSx SINE Alu 1 307 -5 534 213 25 41 chr1 61456855 61456977 -220736687 - MIR SINE MIR -71 191 72 317 348 13 20 chr1 61457015 61457181 -220736483 - MIR SINE MIR -87 121 10 363 253 21 0 chr1 61457732 61457827 -220735837 + MER94 DNA DNA 4 100 -34 406 265 136 19 chr1 61457870 61458032 -220735632 + MIR SINE MIR 82 262 0 421 244 112 5 chr1 61458213 61458349 -220735315 + MIR3 SINE MIR 20 168 -40 245 329 27 89 chr1 61459139 61459364 -220734300 + L2 LINE L2 2848 3058 -214 193 373 29 20 chr1 61459618 61459720 -220733944 - L2 LINE L2 -110 3203 3101 256 274 43 68 chr1 61460361 61460478 -220733186 + L2 LINE L2 3198 3311 -2 341 307 51 15 chr1 61461040 61461177 -220732487 + MIR SINE MIR 23 164 -98 196 265 48 84 chr1 61461404 61461487 -220732177 - MIR SINE MIR -32 230 151 247 261 31 0 chr1 61461492 61461557 -220732107 - L2 LINE L2 -8 3305 3239 193 267 0 0 chr1 61461552 61461597 -220732067 - MIR SINE MIR -142 120 76 * 332 289 35 46 chr1 61461763 61461936 -220731728 - LTR16A LTR ERVL -223 227 57 496 262 39 1 chr1 61462531 61462686 -220730978 - L1M3 LINE L1 -423 5760 5599 213 270 20 40 chr1 61462692 61462792 -220730872 - L2 LINE L2 -632 2682 2585 220 252 8 8 chr1 61464208 61464327 -220729337 + (CA)n Simple_repeat Simple_repeat 1 119 0 240 370 47 16 chr1 61464355 61464482 -220729182 - L3 LINE CR1 -907 670 540 * 359 279 63 9 chr1 61464449 61464560 -220729104 - L2 LINE L2 -18 3254 3138 481 275 202 9 chr1 61464704 61464937 -220728727 - L2 LINE L2 0 3272 2995 762 248 306 3 chr1 61465147 61465490 -220728174 + L2 LINE L2 1985 2431 -883 319 287 23 11 chr1 61465487 61465574 -220728090 + L2 LINE L2 3225 3312 -1 * 615 251 111 15 chr1 61466991 61467190 -220726474 - MIR SINE MIR -5 257 40 252 143 0 0 chr1 61469252 61469294 -220724370 + (T)n Simple_repeat Simple_repeat 1 42 0 1563 123 0 5 chr1 61470186 61470406 -220723258 - AluJb SINE Alu -9 303 85 372 278 82 15 chr1 61471808 61471944 -220721720 - MIR SINE MIR -18 190 44 4045 170 50 44 chr1 61473124 61474292 -220719372 - L1MB8 LINE L1 -9 6169 5002 2211 112 3 6 chr1 61474292 61474605 -220719059 - AluSx SINE Alu 0 312 1 4045 170 50 44 chr1 61474605 61474703 -220718961 - L1MB8 LINE L1 -1176 5002 4906 22 0 0 0 chr1 61474823 61474845 -220718819 + AT_rich Low_complexity Low_complexity 1 22 0 629 190 78 0 chr1 61474916 61475032 -220718632 - FLAM_A SINE Alu -8 125 1 21 36 0 0 chr1 61475032 61475060 -220718604 + AT_rich Low_complexity Low_complexity 1 28 0 756 145 69 23 chr1 61475064 61475195 -220718469 + AluJo SINE Alu 1 137 -175 8667 24 12 245 chr1 61475198 61476976 -220716688 + SVA Other Other 23 1385 -1 31 0 0 0 chr1 61476976 61477007 -220716657 + AT_rich Low_complexity Low_complexity 1 31 0 1017 202 19 5 chr1 61477008 61477216 -220716448 + AluJb SINE Alu 92 302 -10 21 0 0 0 chr1 61477245 61477266 -220716398 + AT_rich Low_complexity Low_complexity 1 21 0 942 167 14 0 chr1 61477393 61477537 -220716127 - FRAM SINE Alu -30 146 1 1317 103 0 0 chr1 61477885 61478060 -220715604 - AluSg/x SINE Alu -4 306 132 2237 84 27 0 chr1 61478060 61478359 -220715305 - AluSx SINE Alu -5 307 1 22 56 0 0 chr1 61478400 61478436 -220715228 + AT_rich Low_complexity Low_complexity 1 36 0 2001 139 0 16 chr1 61478723 61479032 -220714632 - AluSx SINE Alu -8 304 1 702 163 0 57 chr1 61479045 61479186 -220714478 - FLAM_C SINE Alu 0 133 1 402 115 0 0 chr1 61482659 61482720 -220710944 + (TG)n Simple_repeat Simple_repeat 1 61 0 2217 105 10 0 chr1 61482788 61483084 -220710580 + AluSx SINE Alu 1 299 -13 767 252 14 50 chr1 61485152 61485279 -220708385 + MIR SINE MIR 38 155 -107 2263 107 0 0 chr1 61485279 61485587 -220708077 + AluSx SINE Alu 1 308 -4 767 252 14 50 chr1 61485587 61485677 -220707987 + MIR SINE MIR 155 247 -15 282 275 43 58 chr1 61485703 61485841 -220707823 - MIR SINE MIR -56 152 17 1797 147 0 71 chr1 61486538 61486718 -220706946 - AluJo SINE Alu -9 303 155 2153 105 7 0 chr1 61486718 61487013 -220706651 - AluSq SINE Alu -16 297 1 1797 147 0 71 chr1 61487013 61487158 -220706506 - AluJo SINE Alu -157 155 1 237 265 95 130 chr1 61487279 61487649 -220706015 + L2 LINE L2 2894 3250 -22 429 398 69 9 chr1 61487781 61488012 -220705652 - MIR SINE MIR -3 259 15 182 314 67 57 chr1 61488364 61488469 -220705195 + MIR SINE MIR 2 107 -155 337 322 136 14 chr1 61488476 61488690 -220704974 - MIR SINE MIR -21 241 2 189 311 47 75 chr1 61488690 61488780 -220704884 + MIR SINE MIR 124 210 -52 260 231 146 31 chr1 61488894 61489024 -220704640 - L3 LINE CR1 -73 1504 1360 259 283 50 50 chr1 61489309 61489429 -220704235 - MIR3 SINE MIR -29 179 60 192 388 58 0 chr1 61490987 61491090 -220702574 - MIR SINE MIR -51 211 103 1528 150 135 0 chr1 61492024 61492298 -220701366 + AluSx SINE Alu 1 311 -1 63 26 0 0 chr1 61492304 61492381 -220701283 + AT_rich Low_complexity Low_complexity 1 77 0 258 306 0 0 chr1 61492431 61492503 -220701161 - MIR SINE MIR -80 182 111 300 167 0 147 chr1 61493705 61493807 -220699857 - MIR SINE MIR -62 146 60 2057 127 3 16 chr1 61495787 61496103 -220697561 - AluJo SINE Alu 0 312 1 2205 120 7 0 chr1 61497433 61497742 -220695922 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 61497760 61497781 -220695883 + GC_rich Low_complexity Low_complexity 1 21 0 181 248 294 0 chr1 61498092 61498201 -220695463 - MIR3 SINE MIR -66 142 2 * 220 200 20 0 chr1 61498201 61498229 -220695435 + MIR SINE MIR 111 139 -69 2076 109 3 13 chr1 61498402 61498705 -220694959 + AluSx SINE Alu 1 300 -12 183 238 79 0 chr1 61501173 61501236 -220692428 - L2 LINE L2 -72 3200 3133 488 267 75 25 chr1 61501441 61501602 -220692062 - MIR SINE MIR -68 194 26 256 337 61 33 chr1 61501856 61502037 -220691627 - MER112 DNA MER1_type -54 206 21 192 97 0 0 chr1 61504705 61504736 -220688928 + MIR SINE MIR 48 78 -184 381 325 119 0 chr1 61504798 61504958 -220688706 - MIR SINE MIR -55 207 29 197 369 50 7 chr1 61505266 61505407 -220688257 - MIR3 SINE MIR -59 149 3 185 305 116 11 chr1 61505982 61506077 -220687587 + MIR SINE MIR 46 150 -112 285 89 0 0 chr1 61506581 61506626 -220687038 + (CAAAAA)n Simple_repeat Simple_repeat 3 47 0 1754 154 17 3 chr1 61506632 61506931 -220686733 + AluJb SINE Alu 1 303 -9 217 87 22 22 chr1 61507917 61507963 -220685701 + (TG)n Simple_repeat Simple_repeat 2 47 0 212 286 0 0 chr1 61508754 61508810 -220684854 - MIR SINE MIR -65 143 88 551 169 265 7 chr1 61509015 61509151 -220684513 + MER58B DNA MER1_type 171 341 0 188 330 0 44 chr1 61509239 61509330 -220684334 - MIR SINE MIR -73 189 103 196 367 36 22 chr1 61510095 61510234 -220683430 - L2 LINE L2 -211 3061 2921 787 157 0 0 chr1 61510524 61510639 -220683025 - FLAM_A SINE Alu -15 118 4 186 271 21 0 chr1 61512025 61512073 -220681591 - MIR SINE MIR -68 140 92 369 322 0 8 chr1 61513367 61513488 -220680176 - MIR SINE MIR -54 208 89 1563 153 28 21 chr1 61513732 61514020 -220679644 - AluJo SINE Alu -22 290 1 271 262 158 77 chr1 61514030 61514213 -220679451 - MIR SINE MIR -56 206 9 2033 148 3 0 chr1 61514369 61514680 -220678984 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 61515092 61515113 -220678551 + AT_rich Low_complexity Low_complexity 1 21 0 202 273 0 0 chr1 61515924 61515968 -220677696 + (CACG)n Simple_repeat Simple_repeat 3 46 0 278 222 68 34 chr1 61516289 61516406 -220677258 - MIR SINE MIR -55 153 33 203 212 15 91 chr1 61516876 61516942 -220676722 + MIR SINE MIR 112 172 -90 256 302 82 49 chr1 61517420 61517748 -220675916 + L2 LINE L2 2852 3190 -82 332 316 117 34 chr1 61518242 61518508 -220675156 - L3 LINE CR1 -100 1477 1190 2303 76 13 0 chr1 61518942 61519245 -220674419 + AluSx SINE Alu 1 307 -5 193 390 91 0 chr1 61519310 61519497 -220674167 + L2 LINE L2 2679 2882 -432 201 250 33 0 chr1 61519715 61519775 -220673889 + MIR3 SINE MIR 99 160 -48 408 326 112 11 chr1 61519775 61519953 -220673711 - MER117 DNA MER1_type 0 197 2 322 246 98 16 chr1 61520068 61520190 -220673474 + MIR3 SINE MIR 7 138 -70 560 258 0 0 chr1 61520594 61520722 -220672942 - MIR3 SINE MIR -15 193 66 189 263 0 0 chr1 61520881 61520919 -220672745 - L2 LINE L2 -14 3258 3221 221 203 38 63 chr1 61521667 61521746 -220671918 - MIR3 SINE MIR -50 158 82 468 318 123 23 chr1 61522853 61523114 -220670550 - L3 LINE CR1 -36 1541 1255 1343 152 5 0 chr1 61524426 61524637 -220669027 + AluJo SINE Alu 1 212 -100 288 0 0 0 chr1 61524653 61524685 -220668979 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2166 113 0 10 chr1 61525596 61525907 -220667757 + AluSq SINE Alu 1 308 -5 237 331 66 34 chr1 61525987 61526155 -220667509 + MIR SINE MIR 19 152 -56 719 126 118 0 chr1 61526726 61526845 -220666819 - FLAM_C SINE Alu 0 133 1 43 0 0 0 chr1 61527065 61527108 -220666556 + AT_rich Low_complexity Low_complexity 1 43 0 1556 172 0 4 chr1 61527119 61527380 -220666284 - AluJo SINE Alu -52 260 1 34 24 0 0 chr1 61528105 61528146 -220665518 + AT_rich Low_complexity Low_complexity 1 41 0 359 276 0 19 chr1 61528482 61528587 -220665077 + MIR3 SINE MIR 78 180 -28 201 314 22 80 chr1 61530554 61530691 -220662973 + L3 LINE CR1 1222 1350 -227 299 211 92 0 chr1 61531243 61531319 -220662345 - MIR SINE MIR -111 151 69 2036 75 4 11 chr1 61531382 61531661 -220662003 + AluY SINE Alu 35 311 0 228 225 62 12 chr1 61532221 61532301 -220661363 - L2 LINE L2 -213 3059 2976 339 287 0 54 chr1 61532615 61532744 -220660920 - MIR SINE MIR -82 126 5 204 40 0 0 chr1 61533536 61533561 -220660103 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 273 0 18 chr1 61534815 61534870 -220658794 - MIR SINE MIR -181 81 28 240 258 21 54 chr1 61534939 61535032 -220658632 + MIR SINE MIR 64 153 -55 194 289 0 62 chr1 61536219 61536316 -220657348 + L2 LINE L2 2933 3023 -249 2285 91 0 19 chr1 61536466 61536818 -220656846 + AluSx SINE Alu 1 346 0 348 277 66 36 chr1 61539220 61539357 -220654307 + MIR SINE MIR 112 252 -10 258 296 99 40 chr1 61539566 61539718 -220653946 - MIR SINE MIR -70 192 32 2292 87 0 3 chr1 61539959 61540259 -220653405 + AluSx SINE Alu 1 299 -13 238 250 16 31 chr1 61540428 61540492 -220653172 - MER5B DNA MER1_type -3 175 113 270 0 0 0 chr1 61541542 61541572 -220652092 + (CA)n Simple_repeat Simple_repeat 2 31 0 183 298 21 0 chr1 61543051 61543098 -220650566 + L2 LINE L2 3255 3302 -11 221 286 95 0 chr1 61543668 61543752 -220649912 - MIR SINE MIR -66 196 105 183 237 68 17 chr1 61544744 61544803 -220648861 + L2 LINE L2 3159 3220 -93 1418 112 42 5 chr1 61544930 61545144 -220648520 - AluSg/x SINE Alu -11 299 78 454 299 76 25 chr1 61545147 61545304 -220648360 + L2 LINE L2 3149 3313 0 193 263 194 94 chr1 61545364 61545524 -220648140 - MIR3 SINE MIR -10 198 23 246 299 62 10 chr1 61546049 61546146 -220647518 - MIR SINE MIR 0 262 161 1217 256 39 10 chr1 61546270 61546582 -220647082 + MER33 DNA MER1_type 4 324 0 189 262 0 0 chr1 61547939 61547981 -220645683 + L2 LINE L2 3254 3295 -18 788 117 45 0 chr1 61548257 61548368 -220645296 - FLAM_C SINE Alu -16 117 2 343 131 66 0 chr1 61549362 61549423 -220644241 + AluJo SINE Alu 71 135 -167 212 247 27 27 chr1 61550083 61550142 -220643522 + L2 LINE L2 3186 3247 -66 4279 77 36 0 chr1 61550142 61550676 -220642988 + MER41A LTR ERV1 2 554 0 212 247 27 27 chr1 61550676 61550689 -220642975 + L2 LINE L2 3246 3258 -55 1893 122 0 51 chr1 61550797 61550931 -220642733 + AluSx SINE Alu 15 154 -158 2462 63 0 0 chr1 61550931 61551230 -220642434 + AluY SINE Alu 1 299 -12 1318 170 0 101 chr1 61551088 61551406 -220642258 + AluJo SINE Alu 24 309 -3 1893 122 0 51 chr1 61551230 61551406 -220642258 + AluSx SINE Alu 154 309 -3 701 192 42 48 chr1 61554760 61554919 -220638745 + FRAM SINE Alu 1 160 -142 2043 85 8 0 chr1 61554919 61555167 -220638497 + AluSq SINE Alu 1 250 -63 180 0 0 0 chr1 61555632 61555652 -220638012 + (T)n Simple_repeat Simple_repeat 1 20 0 711 133 0 17 chr1 61556053 61556173 -220637491 - FLAM_A SINE Alu 0 142 25 2405 80 10 3 chr1 61556375 61556675 -220636989 - AluSx SINE Alu -10 302 1 201 235 0 74 chr1 61557338 61557419 -220636245 + L3 LINE CR1 1400 1474 -103 23 0 0 0 chr1 61558199 61558222 -220635442 + AT_rich Low_complexity Low_complexity 1 23 0 312 188 0 0 chr1 61558222 61558270 -220635394 - Alu SINE Alu -21 281 234 1853 168 0 7 chr1 61558281 61558573 -220635091 - AluJo SINE Alu -22 290 1 372 267 77 81 chr1 61558576 61558676 -220634988 + L1ME LINE L1 5556 5655 -466 2188 103 10 7 chr1 61558676 61558967 -220634697 + AluY SINE Alu 3 294 -17 2683 10 0 7 chr1 61558969 61559324 -220634340 + AluYb8 SINE Alu 1 353 0 462 31 0 16 chr1 61559260 61559345 -220634319 + (TAAA)n Simple_repeat Simple_repeat 2 85 0 372 267 77 81 chr1 61559324 61559346 -220634318 + L1ME LINE L1 5656 5677 -444 1448 231 48 8 chr1 61559346 61559697 -220633967 - MLT1A1 LTR MaLR 0 365 1 372 267 77 81 chr1 61559697 61559809 -220633855 + L1ME LINE L1 5677 5775 -346 1905 149 17 0 chr1 61559867 61560156 -220633508 + AluJb SINE Alu 1 294 -18 2903 176 49 52 chr1 61560526 61561441 -220632223 - L1MB8 LINE L1 -273 5905 5003 2319 112 3 6 chr1 61561441 61561754 -220631910 - AluSx SINE Alu 0 312 1 2903 176 49 52 chr1 61561754 61561852 -220631812 - L1MB8 LINE L1 -1175 5003 4906 22 0 0 0 chr1 61561972 61561994 -220631670 + AT_rich Low_complexity Low_complexity 1 22 0 580 190 78 0 chr1 61562065 61562181 -220631483 - FLAM_A SINE Alu -8 125 1 21 36 0 0 chr1 61562181 61562209 -220631455 + AT_rich Low_complexity Low_complexity 1 28 0 696 146 69 23 chr1 61562214 61562344 -220631320 + AluJo SINE Alu 2 137 -175 9257 24 19 226 chr1 61562347 61564065 -220629599 + SVA Other Other 23 1385 -1 31 0 0 0 chr1 61564065 61564096 -220629568 + AT_rich Low_complexity Low_complexity 1 31 0 1055 202 19 5 chr1 61564097 61564305 -220629359 + AluJb SINE Alu 92 302 -10 21 0 0 0 chr1 61564334 61564355 -220629309 + AT_rich Low_complexity Low_complexity 1 21 0 986 167 14 0 chr1 61564483 61564627 -220629037 - AluJo SINE Alu -30 282 137 2372 103 0 7 chr1 61564975 61565285 -220628379 - AluSx SINE Alu -4 308 1 311 324 84 22 chr1 61565428 61565653 -220628011 - MLT1K LTR MaLR -348 240 2 342 239 9 46 chr1 61565658 61565767 -220627897 + MIR SINE MIR 96 200 -62 822 264 77 26 chr1 61565770 61566043 -220627621 - L2 LINE L2 0 3313 3027 516 249 45 64 chr1 61566065 61566330 -220627334 - L1MC5 LINE L1 -32 7929 7670 859 186 0 6 chr1 61566359 61566515 -220627149 - AluJo SINE Alu -22 290 136 251 213 40 53 chr1 61566517 61566575 -220627089 - L1MC5 LINE L1 -310 7651 7594 255 41 61 0 chr1 61566575 61566624 -220627040 + (TA)n Simple_repeat Simple_repeat 2 53 0 251 213 40 53 chr1 61566624 61566715 -220626949 - L1MC5 LINE L1 -367 7594 7504 968 118 0 0 chr1 61566723 61566850 -220626814 - AluJo SINE Alu -185 127 1 456 275 46 28 chr1 61566854 61567072 -220626592 - L1MC5 LINE L1 -448 7513 7292 647 125 27 9 chr1 61567220 61567332 -220626332 - FLAM_C SINE Alu 0 143 30 31 0 0 0 chr1 61567342 61567373 -220626291 + AT_rich Low_complexity Low_complexity 1 31 0 300 191 21 164 chr1 61567505 61567569 -220626095 - L1MC5 LINE L1 -743 7218 7147 1980 142 0 20 chr1 61567569 61567872 -220625792 - AluJb SINE Alu -15 297 1 300 191 21 164 chr1 61567872 61567932 -220625732 - L1MC5 LINE L1 -814 7147 7127 1819 138 4 4 chr1 61567932 61568193 -220625471 + AluSq SINE Alu 1 261 -52 300 191 21 164 chr1 61568193 61568256 -220625408 - L1MC5 LINE L1 -834 7127 7057 182 356 69 0 chr1 61569029 61569130 -220624534 - L2 LINE L2 -28 3244 3137 2018 99 31 17 chr1 61569304 61569596 -220624068 - AluY SINE Alu -7 304 9 321 185 0 31 chr1 61569813 61569878 -220623786 + L2 LINE L2 3250 3312 -1 187 374 51 26 chr1 61569890 61570085 -220623579 - L2 LINE L2 -189 3083 2884 222 314 47 0 chr1 61570306 61570392 -220623272 - MIR3 SINE MIR -46 162 73 242 336 60 0 chr1 61570556 61570690 -220622974 + MIR SINE MIR 103 244 -18 563 302 38 14 chr1 61573025 61573237 -220620427 - MIR SINE MIR -12 250 34 207 302 48 0 chr1 61574168 61574231 -220619433 - MIR3 SINE MIR -23 185 120 486 0 0 0 chr1 61576298 61576352 -220617312 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 188 83 0 56 chr1 61576637 61576673 -220616991 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 365 224 9 75 chr1 61577446 61577553 -220616111 + MIR SINE MIR 39 138 -70 226 282 106 0 chr1 61579071 61579156 -220614508 - MER94 DNA DNA -40 94 1 498 281 29 12 chr1 61581074 61581245 -220612419 - MIR3 SINE MIR -22 186 13 294 248 136 32 chr1 61581478 61581603 -220612061 + MIR3 SINE MIR 30 167 -41 231 296 0 15 chr1 61581626 61581712 -220611952 + MIR SINE MIR 49 130 -78 220 271 0 0 chr1 61581985 61582033 -220611631 + (CACG)n Simple_repeat Simple_repeat 4 51 0 350 159 19 17 chr1 61582557 61582666 -220610998 + Alu SINE Alu 1 52 -249 755 214 198 0 chr1 61582668 61582855 -220610809 + MIR SINE MIR 28 251 -11 1485 213 31 0 chr1 61582862 61583149 -220610515 + AluJo SINE Alu 1 296 -16 2277 82 0 4 chr1 61583151 61583474 -220610190 + AluSc SINE Alu 1 322 0 550 277 60 0 chr1 61583584 61583768 -220609896 + MIR SINE MIR 20 214 -48 577 289 81 21 chr1 61583798 61584033 -220609631 - L3 LINE CR1 -547 1030 782 532 277 57 17 chr1 61585034 61585211 -220608453 + MIR3 SINE MIR 18 201 -7 2254 100 23 13 chr1 61586565 61586874 -220606790 - AluSx SINE Alu 0 312 1 723 168 0 8 chr1 61586926 61587045 -220606619 + FLAM_C SINE Alu 1 118 -15 217 341 96 7 chr1 61587369 61587504 -220606160 + L2 LINE L2 3165 3311 -2 543 312 135 0 chr1 61588440 61588655 -220605009 + MIR SINE MIR 5 248 -14 2174 123 10 3 chr1 61588710 61589019 -220604645 + AluSq SINE Alu 1 311 -2 264 292 133 26 chr1 61590005 61590118 -220603546 + MIR SINE MIR 16 140 -68 214 339 27 18 chr1 61590256 61590368 -220603296 + MIR3 SINE MIR 81 193 -15 284 240 23 132 chr1 61590577 61590706 -220602958 - L2 LINE L2 0 3272 3158 227 23 0 47 chr1 61590758 61590801 -220602863 + L1PA4 LINE L1 6115 6155 0 434 252 119 60 chr1 61590834 61591052 -220602612 - L2 LINE L2 -191 3081 2851 269 316 41 41 chr1 61591679 61591850 -220601814 + MIR3 SINE MIR 3 173 -35 477 276 90 13 chr1 61592324 61592480 -220601184 + MIR SINE MIR 24 191 -71 707 194 0 0 chr1 61593819 61593943 -220599721 + FLAM_C SINE Alu 11 134 -9 1918 133 34 17 chr1 61594866 61594993 -220598671 + AluSx SINE Alu 1 124 -188 2123 98 6 70 chr1 61594993 61595309 -220598355 + AluSx SINE Alu 1 296 -16 1918 133 34 17 chr1 61595309 61595475 -220598189 + AluSx SINE Alu 124 299 -13 403 169 36 0 chr1 61595579 61595662 -220598002 + MLT1C LTR MaLR 7 92 -375 2499 85 0 3 chr1 61595666 61595973 -220597691 + AluY SINE Alu 1 306 -5 761 174 4 170 chr1 61595975 61596136 -220597528 + MER2 DNA MER2_type 1 109 -236 1684 158 0 23 chr1 61596136 61596401 -220597263 - AluJo SINE Alu -53 259 1 761 174 4 170 chr1 61596401 61596486 -220597178 + MER2 DNA MER2_type 109 206 -139 708 181 0 0 chr1 61596517 61596633 -220597031 - FLAM_C SINE Alu -26 117 2 254 233 110 55 chr1 61596652 61596725 -220596939 + MER2 DNA MER2_type 268 344 -1 1313 216 65 8 chr1 61596735 61597087 -220596577 + MLT1C LTR MaLR 94 465 -2 303 319 29 29 chr1 61598156 61598294 -220595370 + MIR SINE MIR 94 231 -31 461 207 41 33 chr1 61598376 61598497 -220595167 + L2 LINE L2 3180 3301 -12 354 280 16 40 chr1 61599314 61599439 -220594225 + MIR SINE MIR 67 188 -74 1915 117 42 11 chr1 61599980 61600263 -220593401 - AluJo SINE Alu -20 292 1 181 340 106 0 chr1 61600447 61600541 -220593123 + MIR SINE MIR 102 205 -57 748 189 0 0 chr1 61601151 61601283 -220592381 + FLAM_A SINE Alu 1 132 -1 309 258 98 37 chr1 61603017 61603180 -220590484 - MIR3 SINE MIR -24 184 12 200 220 40 0 chr1 61604271 61604321 -220589343 + L2 LINE L2 3221 3272 0 2201 128 3 3 chr1 61604481 61604786 -220588878 - AluSx SINE Alu -7 305 1 710 197 0 0 chr1 61606757 61606884 -220586780 + FLAM_A SINE Alu 1 127 -6 204 91 0 30 chr1 61607294 61607327 -220586337 - MIR SINE MIR -14 248 217 195 232 29 29 chr1 61607707 61607776 -220585888 + MIR3 SINE MIR 103 171 -37 195 267 0 0 chr1 61608174 61608219 -220585445 + L3 LINE CR1 1079 1123 -454 198 0 0 0 chr1 61608344 61608366 -220585298 + (A)n Simple_repeat Simple_repeat 1 22 0 367 183 42 0 chr1 61608431 61608502 -220585162 + L3 LINE CR1 1396 1469 -108 202 194 0 0 chr1 61608523 61608559 -220585105 - L3 LINE CR1 -11 1566 1531 254 257 0 29 chr1 61609130 61609200 -220584464 + L2 LINE L2 3228 3295 -18 268 237 165 21 chr1 61609427 61609524 -220584140 + L2 LINE L2 3185 3295 -18 207 323 71 24 chr1 61609541 61609668 -220583996 + MIR3 SINE MIR 73 205 -3 347 262 87 66 chr1 61609774 61609933 -220583731 + MIR SINE MIR 20 185 -77 1841 165 0 33 chr1 61609933 61610236 -220583428 + AluJo SINE Alu 1 293 -19 347 262 87 66 chr1 61610236 61610259 -220583405 + MIR SINE MIR 185 206 -56 1108 191 14 18 chr1 61613219 61613439 -220580225 + MER58A DNA MER1_type 5 223 -1 228 275 168 23 chr1 61613498 61613629 -220580035 - MIR3 SINE MIR -40 168 19 886 255 37 16 chr1 61614954 61615197 -220578467 + MIR SINE MIR 4 251 -11 259 213 59 118 chr1 61615469 61615605 -220578059 - MIR SINE MIR -60 202 75 336 319 46 46 chr1 61616003 61616219 -220577445 + MIR SINE MIR 15 230 -32 267 279 0 0 chr1 61616966 61617045 -220576619 + L1ME LINE L1 5669 5747 -374 2212 92 44 0 chr1 61617155 61617449 -220576215 + AluSx SINE Alu 1 307 -5 296 268 37 0 chr1 61617751 61617833 -220575831 - MER103 DNA DNA -40 126 42 417 323 60 18 chr1 61619466 61619633 -220574031 + MER117 DNA MER1_type 20 193 -4 231 293 40 0 chr1 61621106 61621181 -220572483 - MIR SINE MIR -113 149 72 617 269 81 14 chr1 61621233 61621456 -220572208 + MIR SINE MIR 24 261 -1 180 281 163 22 chr1 61621498 61621633 -220572031 + L2 LINE L2 2954 3107 -165 308 333 18 0 chr1 61622065 61622176 -220571488 - MIR SINE MIR -60 148 36 182 135 27 0 chr1 61622591 61622628 -220571036 + MIR SINE MIR 104 141 -67 2126 138 0 10 chr1 61622764 61623069 -220570595 + AluJb SINE Alu 1 302 -10 225 0 0 0 chr1 61624619 61624644 -220569020 + (CATG)n Simple_repeat Simple_repeat 3 27 0 320 196 10 59 chr1 61625208 61625310 -220568354 + GA-rich Low_complexity Low_complexity 2 98 0 210 150 0 0 chr1 61625456 61625496 -220568168 + (TG)n Simple_repeat Simple_repeat 2 41 0 187 264 154 42 chr1 61626684 61626814 -220566850 - MIR SINE MIR -67 141 33 1036 178 163 42 chr1 61630271 61630535 -220563129 + AluJo SINE Alu 1 296 -6 2276 112 0 3 chr1 61630535 61630840 -220562824 + AluSc SINE Alu 1 304 -5 2114 139 3 3 chr1 61631344 61631647 -220562017 + AluSx SINE Alu 1 303 -9 865 143 0 0 chr1 61631674 61631807 -220561857 - FLAM_C SINE Alu 0 133 1 2327 100 3 0 chr1 61632136 61632519 -220561145 + AluSp SINE Alu 1 384 0 2310 105 3 16 chr1 61632524 61632839 -220560825 + AluSx SINE Alu 1 311 -1 2569 71 0 0 chr1 61633257 61633565 -220560099 + AluY SINE Alu 1 308 -3 319 316 37 22 chr1 61633971 61634107 -220559557 - L2 LINE L2 -226 3046 2909 380 269 91 46 chr1 61635154 61635329 -220558335 - MIR SINE MIR -59 203 21 945 130 162 0 chr1 61636116 61636270 -220557394 - FAM SINE Alu -5 44 1 552 303 87 0 chr1 61637709 61637904 -220555760 + MIR SINE MIR 48 259 -3 242 303 109 8 chr1 61637939 61638058 -220555606 - MIR SINE MIR -62 146 16 1890 115 6 70 chr1 61639009 61639322 -220554342 + AluJb SINE Alu 1 293 -19 607 207 53 18 chr1 61639362 61639531 -220554133 + MIR SINE MIR 88 262 0 200 200 0 25 chr1 61639611 61639651 -220554013 + MIR SINE MIR 218 256 -6 263 299 115 40 chr1 61641619 61641793 -220551871 - MIR SINE MIR -35 227 41 399 245 143 76 chr1 61641800 61642037 -220551627 + MER112 DNA MER1_type 2 254 -6 218 366 12 0 chr1 61642170 61642252 -220551412 - L2 LINE L2 -49 3264 3182 711 189 8 0 chr1 61642941 61643073 -220550591 + AluJo SINE Alu 2 134 -178 447 250 52 52 chr1 61643089 61643191 -220550473 - MIR SINE MIR 0 262 158 2258 120 0 0 chr1 61643191 61643492 -220550172 - AluSx SINE Alu -11 301 1 447 250 52 52 chr1 61643492 61643581 -220550083 - MIR SINE MIR -103 159 71 2538 62 0 3 chr1 61644128 61644435 -220549229 - AluY SINE Alu -5 306 1 186 303 103 62 chr1 61644703 61644848 -220548816 - MIR3 SINE MIR -56 152 2 290 309 47 27 chr1 61645056 61645205 -220548459 - MIR SINE MIR -62 200 49 2520 78 0 3 chr1 61645343 61645652 -220548012 + AluSg SINE Alu 1 308 -2 480 218 73 8 chr1 61647628 61647752 -220545912 + MIR SINE MIR 16 147 -61 441 309 97 28 chr1 61648846 61649063 -220544601 + MIR SINE MIR 17 248 -14 236 53 26 0 chr1 61650912 61650950 -220542714 + (CA)n Simple_repeat Simple_repeat 1 39 0 278 334 116 18 chr1 61651688 61651916 -220541748 - MIR SINE MIR 0 262 10 498 281 29 12 chr1 61703670 61703841 -220489823 - MIR3 SINE MIR -22 186 13 284 246 127 32 chr1 61704074 61704200 -220489464 + MIR3 SINE MIR 30 167 -41 231 296 0 15 chr1 61704223 61704309 -220489355 + MIR SINE MIR 49 130 -78 220 271 0 0 chr1 61704582 61704630 -220489034 + (CACG)n Simple_repeat Simple_repeat 4 51 0 350 159 19 17 chr1 61705154 61705263 -220488401 + Alu SINE Alu 1 52 -250 755 214 198 0 chr1 61705265 61705452 -220488212 + MIR SINE MIR 28 251 -11 1485 213 31 0 chr1 61705459 61705746 -220487918 + AluJo SINE Alu 1 296 -16 2277 82 0 4 chr1 61705748 61706071 -220487593 + AluSc SINE Alu 1 322 0 550 277 60 0 chr1 61706181 61706365 -220487299 + MIR SINE MIR 20 214 -48 577 289 81 21 chr1 61706395 61706630 -220487034 - L3 LINE CR1 -547 1030 782 532 277 57 17 chr1 61707631 61707808 -220485856 + MIR3 SINE MIR 18 201 -7 2254 100 23 13 chr1 61709162 61709471 -220484193 - AluSx SINE Alu 0 312 1 723 168 0 8 chr1 61709523 61709642 -220484022 + FLAM_C SINE Alu 1 118 -15 217 341 96 7 chr1 61709966 61710101 -220483563 + L2 LINE L2 3165 3311 -2 543 312 135 0 chr1 61711037 61711252 -220482412 + MIR SINE MIR 5 248 -14 2174 123 10 3 chr1 61711307 61711616 -220482048 + AluSq SINE Alu 1 311 -2 264 292 133 26 chr1 61712602 61712715 -220480949 + MIR SINE MIR 16 140 -68 214 339 27 18 chr1 61712853 61712965 -220480699 + MIR3 SINE MIR 81 193 -15 284 240 23 132 chr1 61713174 61713303 -220480361 - L2 LINE L2 0 3272 3158 227 23 0 47 chr1 61713355 61713398 -220480266 + L1PA4 LINE L1 6115 6155 0 434 252 119 60 chr1 61713431 61713649 -220480015 - L2 LINE L2 -191 3081 2851 269 316 41 41 chr1 61714276 61714447 -220479217 + MIR3 SINE MIR 3 173 -35 477 276 90 13 chr1 61714921 61715077 -220478587 + MIR SINE MIR 24 191 -71 707 194 0 0 chr1 61716416 61716540 -220477124 + FLAM_C SINE Alu 11 134 -9 1918 133 34 17 chr1 61717409 61717536 -220476128 + AluSx SINE Alu 1 124 -188 2123 98 6 70 chr1 61717536 61717852 -220475812 + AluSx SINE Alu 1 296 -16 1918 133 34 17 chr1 61717852 61718018 -220475646 + AluSx SINE Alu 124 299 -13 403 169 36 0 chr1 61718122 61718205 -220475459 + MLT1C LTR MaLR 7 92 -375 2499 85 0 3 chr1 61718209 61718516 -220475148 + AluY SINE Alu 1 306 -5 761 174 4 170 chr1 61718518 61718679 -220474985 + MER2 DNA MER2_type 1 109 -236 1684 158 0 23 chr1 61718679 61718944 -220474720 - AluJo SINE Alu -53 259 1 761 174 4 170 chr1 61718944 61719029 -220474635 + MER2 DNA MER2_type 109 206 -139 708 181 0 0 chr1 61719060 61719176 -220474488 - FLAM_C SINE Alu -26 117 2 254 233 110 55 chr1 61719195 61719268 -220474396 + MER2 DNA MER2_type 268 344 -1 1313 216 65 8 chr1 61719278 61719630 -220474034 + MLT1C LTR MaLR 94 465 -2 24 0 0 0 chr1 61719917 61719941 -220473723 + GC_rich Low_complexity Low_complexity 1 24 0 303 319 29 29 chr1 61720696 61720834 -220472830 + MIR SINE MIR 94 231 -31 461 207 41 33 chr1 61720916 61721037 -220472627 + L2 LINE L2 3180 3301 -12 354 280 16 40 chr1 61721854 61721979 -220471685 + MIR SINE MIR 67 188 -74 1915 117 42 11 chr1 61722520 61722803 -220470861 - AluJo SINE Alu -20 292 1 181 340 106 0 chr1 61722987 61723081 -220470583 + MIR SINE MIR 102 205 -57 748 189 0 0 chr1 61723691 61723823 -220469841 + FLAM_A SINE Alu 1 132 -1 309 258 98 37 chr1 61725557 61725720 -220467944 - MIR3 SINE MIR -24 184 12 200 220 40 0 chr1 61726811 61726861 -220466803 + L2 LINE L2 3221 3272 0 2201 128 3 3 chr1 61727021 61727326 -220466338 - AluSx SINE Alu -7 305 1 710 197 0 0 chr1 61729297 61729424 -220464240 + FLAM_A SINE Alu 1 127 -6 204 91 0 30 chr1 61729834 61729867 -220463797 - MIR SINE MIR -14 248 217 184 235 29 29 chr1 61730249 61730317 -220463347 + MIR3 SINE MIR 104 171 -37 195 267 0 0 chr1 61730715 61730760 -220462904 + L3 LINE CR1 1079 1123 -454 198 0 0 0 chr1 61730885 61730907 -220462757 + (A)n Simple_repeat Simple_repeat 1 22 0 367 183 42 0 chr1 61730972 61731043 -220462621 + L3 LINE CR1 1396 1469 -108 202 194 0 0 chr1 61731064 61731100 -220462564 - L3 LINE CR1 -11 1566 1531 254 257 0 29 chr1 61731671 61731741 -220461923 + L2 LINE L2 3228 3295 -18 268 237 165 21 chr1 61731968 61732065 -220461599 + L2 LINE L2 3185 3295 -18 207 323 71 24 chr1 61732082 61732209 -220461455 + MIR3 SINE MIR 73 205 -3 347 262 87 66 chr1 61732315 61732474 -220461190 + MIR SINE MIR 20 185 -77 1841 165 0 33 chr1 61732474 61732777 -220460887 + AluJo SINE Alu 1 293 -19 347 262 87 66 chr1 61732777 61732800 -220460864 + MIR SINE MIR 185 206 -56 1108 191 14 18 chr1 61735760 61735980 -220457684 + MER58A DNA MER1_type 5 223 -1 228 275 168 23 chr1 61736039 61736170 -220457494 - MIR3 SINE MIR -40 168 19 886 255 37 16 chr1 61737495 61737738 -220455926 + MIR SINE MIR 4 251 -11 259 213 59 118 chr1 61738010 61738146 -220455518 - MIR SINE MIR -60 202 75 336 319 46 46 chr1 61738544 61738760 -220454904 + MIR SINE MIR 15 230 -32 267 279 0 0 chr1 61739507 61739586 -220454078 + L1ME LINE L1 5669 5747 -374 2212 92 44 0 chr1 61739696 61739990 -220453674 + AluSx SINE Alu 1 307 -5 296 268 37 0 chr1 61740292 61740374 -220453290 - MER103 DNA DNA -40 126 42 417 323 60 18 chr1 61742008 61742175 -220451489 + MER117 DNA MER1_type 20 193 -4 231 293 40 0 chr1 61743648 61743723 -220449941 - MIR SINE MIR -113 149 72 617 269 81 14 chr1 61743775 61743998 -220449666 + MIR SINE MIR 24 261 -1 180 281 163 22 chr1 61744040 61744175 -220449489 + L2 LINE L2 2954 3107 -165 308 333 18 0 chr1 61744459 61744570 -220449094 - MIR SINE MIR -60 148 36 182 135 27 0 chr1 61744985 61745022 -220448642 + MIR SINE MIR 104 141 -67 2126 138 0 10 chr1 61745158 61745463 -220448201 + AluJb SINE Alu 1 302 -10 225 0 0 0 chr1 61747013 61747038 -220446626 + (CATG)n Simple_repeat Simple_repeat 3 27 0 320 196 10 59 chr1 61747602 61747704 -220445960 + GA-rich Low_complexity Low_complexity 2 98 0 210 150 0 0 chr1 61747850 61747890 -220445774 + (TG)n Simple_repeat Simple_repeat 2 41 0 187 264 154 42 chr1 61749078 61749208 -220444456 - MIR SINE MIR -67 141 33 1036 178 163 42 chr1 61752515 61752779 -220440885 + AluJo SINE Alu 1 296 -6 2276 112 0 3 chr1 61752779 61753084 -220440580 + AluSc SINE Alu 1 304 -5 2249 125 0 0 chr1 61753588 61753891 -220439773 + AluSx SINE Alu 1 303 -9 865 143 0 0 chr1 61753918 61754051 -220439613 - FLAM_C SINE Alu 0 133 1 2327 100 3 0 chr1 61754380 61754763 -220438901 + AluSp SINE Alu 1 384 0 2310 105 3 16 chr1 61754768 61755083 -220438581 + AluSx SINE Alu 1 311 -1 2569 71 0 0 chr1 61755501 61755809 -220437855 + AluY SINE Alu 1 308 -3 319 316 37 22 chr1 61756215 61756351 -220437313 - L2 LINE L2 -226 3046 2909 380 269 91 46 chr1 61757398 61757573 -220436091 - MIR SINE MIR -59 203 21 945 130 162 0 chr1 61758360 61758514 -220435150 - FAM SINE Alu -5 44 1 552 303 87 0 chr1 61759953 61760148 -220433516 + MIR SINE MIR 48 259 -3 242 303 109 8 chr1 61760183 61760302 -220433362 - MIR SINE MIR -62 146 16 1890 115 6 70 chr1 61761253 61761566 -220432098 + AluJb SINE Alu 1 293 -19 607 207 53 18 chr1 61761606 61761775 -220431889 + MIR SINE MIR 88 262 0 200 200 0 25 chr1 61761855 61761895 -220431769 + MIR SINE MIR 218 256 -6 263 299 115 40 chr1 61763863 61764037 -220429627 - MIR SINE MIR -35 227 41 399 245 143 76 chr1 61764044 61764281 -220429383 + MER112 DNA MER1_type 2 254 -6 218 366 12 0 chr1 61764414 61764496 -220429168 - L2 LINE L2 -49 3264 3182 711 189 8 0 chr1 61765185 61765317 -220428347 + AluJo SINE Alu 2 134 -178 447 250 52 52 chr1 61765333 61765435 -220428229 - MIR SINE MIR 0 262 158 2258 120 0 0 chr1 61765435 61765736 -220427928 - AluSx SINE Alu -11 301 1 447 250 52 52 chr1 61765736 61765825 -220427839 - MIR SINE MIR -103 159 71 2538 62 0 3 chr1 61766372 61766679 -220426985 - AluY SINE Alu -5 306 1 186 303 103 62 chr1 61766947 61767092 -220426572 - MIR3 SINE MIR -56 152 2 290 309 47 27 chr1 61767300 61767449 -220426215 - MIR SINE MIR -62 200 49 2520 78 0 3 chr1 61767587 61767896 -220425768 + AluSg SINE Alu 1 308 -2 480 218 73 8 chr1 61769758 61769882 -220423782 + MIR SINE MIR 16 147 -61 441 309 97 28 chr1 61770976 61771193 -220422471 + MIR SINE MIR 17 248 -14 236 53 26 0 chr1 61773042 61773080 -220420584 + (CA)n Simple_repeat Simple_repeat 1 39 0 260 329 136 13 chr1 61773818 61773973 -220419691 - MIR SINE MIR 0 262 89 223 93 47 0 chr1 61777543 61777586 -220416078 + (CCCG)n Simple_repeat Simple_repeat 4 48 0 22 0 0 0 chr1 61777587 61777609 -220416055 + GC_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr1 61777713 61777743 -220415921 + (CCG)n Simple_repeat Simple_repeat 3 32 0 183 42 0 0 chr1 61777787 61777811 -220415853 + (CTCG)n Simple_repeat Simple_repeat 3 26 0 191 152 22 0 chr1 61777955 61778001 -220415663 + (CCCG)n Simple_repeat Simple_repeat 1 47 0 258 32 0 0 chr1 61778034 61778065 -220415599 + (CCG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr1 61778164 61778187 -220415477 + GC_rich Low_complexity Low_complexity 1 23 0 253 297 16 44 chr1 61778484 61778666 -220414998 + C-rich Low_complexity Low_complexity 4 180 0 252 0 0 0 chr1 61779426 61779454 -220414210 + (T)n Simple_repeat Simple_repeat 1 28 0 204 350 20 20 chr1 61780300 61780400 -220413264 + MIR3 SINE MIR 108 207 -1 257 264 100 118 chr1 61780847 61781127 -220412537 + L2 LINE L2 2949 3223 -49 402 250 103 9 chr1 61781446 61781562 -220412102 - L2 LINE L2 -1 3312 3186 289 295 62 0 chr1 61782350 61782479 -220411185 + MIR SINE MIR 60 196 -66 2231 121 0 0 chr1 61782874 61783171 -220410493 + AluSg SINE Alu 1 297 -13 472 111 0 0 chr1 61783187 61783259 -220410405 + AluJ/FLAM SINE Alu 5 76 -236 2480 67 0 0 chr1 61783288 61783586 -220410078 + AluY SINE Alu 2 299 -12 1234 118 0 17 chr1 61783859 61784037 -220409627 + AluSg/x SINE Alu 137 311 -1 1893 156 14 8 chr1 61784041 61784399 -220409265 + L1MB3 LINE L1 5816 6175 -8 2245 107 0 3 chr1 61784400 61784690 -220408974 - AluSg SINE Alu -21 289 1 230 272 40 24 chr1 61784814 61784939 -220408725 + L2 LINE L2 1994 2120 -1194 366 153 35 110 chr1 61784940 61785089 -220408575 - MLT1J2 LTR MaLR -2 579 340 273 338 126 44 chr1 61785285 61785578 -220408086 + L2 LINE L2 2120 2436 -878 561 295 74 18 chr1 61785705 61785922 -220407742 + L2 LINE L2 2606 2834 -480 201 353 17 82 chr1 61785927 61786159 -220407505 - L2 LINE L2 -30 3242 3026 182 280 0 40 chr1 61786212 61786287 -220407377 - L2 LINE L2 -1184 2130 2059 2235 107 0 3 chr1 61786422 61786713 -220406951 - AluSx SINE Alu -22 290 1 380 332 68 16 chr1 61787114 61787372 -220406292 - L2 LINE L2 -207 3065 2794 186 182 0 0 chr1 61788143 61788176 -220405488 + MIR SINE MIR 114 146 -62 219 231 44 22 chr1 61788470 61788561 -220405103 + (TCTCTG)n Simple_repeat Simple_repeat 4 96 0 563 271 33 0 chr1 61788630 61788752 -220404912 + L2 LINE L2 3184 3309 -4 351 308 11 22 chr1 61788752 61788934 -220404730 + CT-rich Low_complexity Low_complexity 1 180 0 2479 58 0 23 chr1 61789181 61789489 -220404175 - AluY SINE Alu -10 301 1 429 143 0 0 chr1 61789706 61789769 -220403895 + AluJ/FLAM SINE Alu 2 64 -248 22 35 0 0 chr1 61789800 61789829 -220403835 + AT_rich Low_complexity Low_complexity 1 29 0 2149 114 4 0 chr1 61789829 61790146 -220403518 + AluSx SINE Alu 2 319 0 1981 163 0 10 chr1 61790146 61790459 -220403205 + AluSx SINE Alu 1 310 -2 2419 98 0 0 chr1 61790534 61790830 -220402834 - AluSc SINE Alu -13 296 1 1378 162 27 120 chr1 61790907 61791053 -220402611 + AluYb8 SINE Alu 1 100 -218 525 32 0 0 chr1 61791053 61791116 -220402548 + (CA)n Simple_repeat Simple_repeat 2 64 0 1378 162 27 120 chr1 61791116 61791303 -220402361 + AluYb8 SINE Alu 100 303 -15 2532 84 0 0 chr1 61791305 61791616 -220402048 + AluY SINE Alu 1 311 0 700 153 0 17 chr1 61791626 61791744 -220401920 - FLAM_C SINE Alu -26 117 2 2224 107 0 0 chr1 61791751 61792059 -220401605 - AluSx SINE Alu 0 313 6 482 257 49 21 chr1 61792083 61792227 -220401437 - MIR SINE MIR -82 180 33 2241 95 0 20 chr1 61793530 61793824 -220399840 - AluSx SINE Alu -2 310 23 319 359 35 14 chr1 61793950 61794095 -220399569 + LTR16A1 LTR ERVL 1 148 -309 444 379 42 30 chr1 61794120 61794521 -220399143 + ERVL LTR ERVL 4856 5261 -503 2290 94 0 3 chr1 61794551 61794849 -220398815 + AluY SINE Alu 3 299 -12 1069 185 0 0 chr1 61794849 61795027 -220398637 + AluSq SINE Alu 134 311 -2 960 274 63 70 chr1 61795260 61795494 -220398170 + LTR16A LTR ERVL 1 235 -215 2178 132 3 0 chr1 61795494 61795790 -220397874 - AluSx SINE Alu -15 297 1 2003 169 0 0 chr1 61795798 61796100 -220397564 - AluJb SINE Alu -10 302 1 960 274 63 70 chr1 61796100 61796316 -220397348 + LTR16A LTR ERVL 242 450 0 2376 76 10 0 chr1 61796522 61796811 -220396853 - AluSx SINE Alu -20 292 1 1660 245 110 32 chr1 61796846 61797164 -220396500 - MLT1G LTR MaLR 0 590 211 2516 75 0 7 chr1 61797164 61797469 -220396195 + AluSx SINE Alu 1 303 -9 1660 245 110 32 chr1 61797469 61797688 -220395976 - MLT1G LTR MaLR -379 211 11 1122 143 6 17 chr1 61797688 61797863 -220395801 - AluJb SINE Alu -7 305 133 199 54 54 0 chr1 61797863 61797900 -220395764 + T-rich Low_complexity Low_complexity 2 40 0 2192 110 0 0 chr1 61797900 61798181 -220395483 - AluSg SINE Alu -29 281 1 50 18 0 0 chr1 61798193 61798250 -220395414 + AT_rich Low_complexity Low_complexity 1 57 0 1228 180 126 20 chr1 61798250 61798505 -220395159 - AluJo SINE Alu -30 282 1 295 272 85 54 chr1 61798637 61798910 -220394754 + L1ME4a LINE L1 5660 5932 -189 2183 115 3 16 chr1 61798915 61799228 -220394436 + AluSx SINE Alu 1 309 -3 653 221 0 21 chr1 61799236 61799381 -220394283 - FLAM_C SINE Alu 0 143 2 1841 157 3 29 chr1 61799393 61799706 -220393958 - AluJb SINE Alu -7 305 1 299 259 46 61 chr1 61799726 61799857 -220393807 - L2 LINE L2 -8 3264 3136 2343 109 0 10 chr1 61799947 61800082 -220393582 + AluSq SINE Alu 1 136 -177 2488 84 0 7 chr1 61800082 61800392 -220393272 + AluY SINE Alu 1 308 -3 2343 109 0 10 chr1 61800392 61800568 -220393096 + AluSq SINE Alu 136 309 -4 642 271 92 32 chr1 61800625 61800906 -220392758 + MLT1L LTR MaLR 165 462 -153 314 307 145 45 chr1 61801072 61801242 -220392422 - L2 LINE L2 -413 2901 2749 1924 146 0 83 chr1 61801242 61801419 -220392245 - AluJb SINE Alu -4 308 171 297 51 0 0 chr1 61801419 61801458 -220392206 + (TG)n Simple_repeat Simple_repeat 2 40 0 1924 146 0 83 chr1 61801458 61801616 -220392048 - AluJb SINE Alu -141 171 1 314 307 145 45 chr1 61801616 61801968 -220391696 - L2 LINE L2 -565 2749 2326 2216 103 3 3 chr1 61802210 61802502 -220391162 - AluSx SINE Alu -20 292 1 329 262 25 25 chr1 61802511 61802633 -220391031 - LTR16C LTR ERVL -2 489 368 1151 139 12 0 chr1 61802996 61803161 -220390503 - AluSg/x SINE Alu -12 300 134 2309 87 3 16 chr1 61803161 61803471 -220390193 - AluSx SINE Alu -6 306 1 2188 97 3 21 chr1 61803502 61803832 -220389832 + AluSq SINE Alu 1 325 0 228 337 0 11 chr1 61803925 61804017 -220389647 + LTR67 LTR ERVL 457 547 -10 2392 102 0 0 chr1 61804018 61804323 -220389341 + AluSx SINE Alu 1 305 -7 2315 96 0 19 chr1 61804325 61804637 -220389027 + AluSg SINE Alu 1 306 -4 2491 66 3 13 chr1 61805397 61805527 -220388137 + AluY SINE Alu 5 135 -176 2537 63 0 7 chr1 61805527 61805828 -220387836 + AluY SINE Alu 2 300 -11 2491 66 3 13 chr1 61805828 61805998 -220387666 + AluY SINE Alu 135 302 -9 2065 147 0 3 chr1 61806011 61806323 -220387341 + AluSq SINE Alu 1 311 -2 522 254 38 88 chr1 61806629 61806691 -220386973 - L1MC4a LINE L1 -1802 6006 5942 1706 181 13 7 chr1 61806691 61806994 -220386670 - AluJo SINE Alu -7 305 1 2346 107 3 0 chr1 61806996 61807328 -220386336 - AluSx SINE Alu 0 312 1 522 254 38 88 chr1 61807328 61807451 -220386213 - L1MC4a LINE L1 -1867 5941 5830 2183 126 7 10 chr1 61807451 61807760 -220385904 - AluSx SINE Alu -4 308 1 522 254 38 88 chr1 61807760 61807810 -220385854 - L1MC4a LINE L1 -1978 5830 5779 2491 85 0 3 chr1 61807884 61808191 -220385473 - AluSc SINE Alu -2 307 2 2322 98 10 0 chr1 61808198 61808503 -220385161 - AluSq SINE Alu -5 308 1 355 312 54 57 chr1 61808709 61808939 -220384725 + L1ME4a LINE L1 5484 5713 -408 2098 108 52 0 chr1 61808939 61809226 -220384438 + AluSx SINE Alu 1 302 -10 355 312 54 57 chr1 61809226 61809325 -220384339 + L1ME4a LINE L1 5713 5814 -307 2160 114 3 10 chr1 61809325 61809631 -220384033 - AluSx SINE Alu -8 304 1 355 312 54 57 chr1 61809631 61809723 -220383941 + L1ME4a LINE L1 5814 5905 -216 504 241 43 0 chr1 61809770 61809886 -220383778 + MIR SINE MIR 71 191 -71 871 167 0 0 chr1 61809895 61810027 -220383637 + FLAM_C SINE Alu 1 132 -11 2367 88 0 10 chr1 61810116 61810422 -220383242 - AluSg SINE Alu -7 303 1 954 275 63 48 chr1 61810767 61810910 -220382754 - MLT1K LTR MaLR -24 564 425 2416 104 0 0 chr1 61810910 61811219 -220382445 + AluSx SINE Alu 1 309 -3 954 275 63 48 chr1 61811219 61811472 -220382192 - MLT1K LTR MaLR -163 425 162 514 294 82 0 chr1 61811968 61812162 -220381502 - MIR SINE MIR -6 256 47 2963 10 0 0 chr1 61812346 61812659 -220381005 + AluYb8 SINE Alu 1 313 -5 1800 155 7 17 chr1 61812871 61813162 -220380502 - AluJo SINE Alu -24 288 1 395 282 52 107 chr1 61813208 61813460 -220380204 - L2 LINE L2 -96 3176 2939 2256 113 3 3 chr1 61813460 61813770 -220379894 + AluSx SINE Alu 1 310 -2 362 146 0 0 chr1 61813770 61813825 -220379839 + MSTA LTR MaLR 374 428 0 273 333 22 22 chr1 61813836 61813971 -220379693 + MIR3 SINE MIR 20 154 -54 238 267 100 25 chr1 61814103 61814223 -220379441 + L2 LINE L2 1969 2097 -1217 2384 75 6 31 chr1 61814235 61814555 -220379109 - AluSq SINE Alu -1 312 1 40903 60 2 2 chr1 61814605 61815735 -220377929 - L1PA5 LINE L1 0 6154 5025 2479 85 0 0 chr1 61815735 61816040 -220377624 - AluY SINE Alu -6 305 1 40903 60 2 2 chr1 61816040 61821081 -220372583 - L1PA5 LINE L1 -1129 5025 11 410 317 178 22 chr1 61821107 61821286 -220372378 + L2 LINE L2 2132 2282 -1032 2170 118 0 0 chr1 61821286 61821635 -220372029 - AluSg1 SINE Alu 0 349 1 410 317 178 22 chr1 61821635 61821908 -220371756 + L2 LINE L2 2282 2656 -658 1655 213 30 178 chr1 61821946 61822322 -220371342 + L1M4 LINE L1 3794 4224 -1922 2285 116 0 0 chr1 61822322 61822615 -220371049 + AluSg SINE Alu 1 293 -17 1655 213 30 178 chr1 61822615 61822801 -220370863 + L1M4 LINE L1 4224 4436 -1710 956 137 0 0 chr1 61822801 61822932 -220370732 + FLAM_C SINE Alu 11 141 -2 1655 213 30 178 chr1 61822932 61823265 -220370399 + L1M4 LINE L1 4436 4668 -1478 1777 123 112 4 chr1 61823528 61823797 -220369867 + AluSx SINE Alu 1 298 -14 897 159 0 0 chr1 61824133 61824259 -220369405 + FRAM SINE Alu 12 137 -39 189 0 0 0 chr1 61824263 61824284 -220369380 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 2227 108 0 3 chr1 61824291 61824587 -220369077 + AluY SINE Alu 1 295 -16 186 43 0 0 chr1 61824591 61824614 -220369050 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 459 238 23 76 chr1 61824716 61824888 -220368776 + LTR33 LTR ERVL 5 167 -354 870 224 78 12 chr1 61824916 61825171 -220368493 + LTR33 LTR ERVL 244 515 -6 928 167 49 6 chr1 61825182 61825344 -220368320 - AluSg/x SINE Alu -6 303 135 425 278 23 8 chr1 61825357 61825490 -220368174 + MIR SINE MIR 110 244 -18 1542 174 6 61 chr1 61825505 61825672 -220367992 - AluJo SINE Alu -14 298 154 2411 91 0 0 chr1 61825672 61825970 -220367694 - AluSg SINE Alu -12 298 1 1542 174 6 61 chr1 61825970 61826113 -220367551 - AluJo SINE Alu -158 154 5 26 0 0 0 chr1 61826125 61826151 -220367513 + AT_rich Low_complexity Low_complexity 1 26 0 902 161 0 0 chr1 61826184 61826321 -220367343 - AluJo SINE Alu -171 141 5 1011 77 0 0 chr1 61826333 61826463 -220367201 - AluY SINE Alu -3 308 179 1953 156 7 19 chr1 61826469 61826776 -220366888 - AluSx SINE Alu -9 303 1 2349 101 0 7 chr1 61827246 61827544 -220366120 + AluSg SINE Alu 1 296 -14 251 247 194 21 chr1 61827555 61827648 -220366016 - MIR SINE MIR -71 137 29 222 235 165 17 chr1 61827871 61827986 -220365678 + L3 LINE CR1 1230 1361 -216 938 173 12 0 chr1 61827996 61828164 -220365500 + AluJb SINE Alu 130 299 -13 323 288 50 88 chr1 61828194 61828354 -220365310 + L3 LINE CR1 1422 1575 -2 585 272 178 19 chr1 61828556 61828865 -220364799 + L2 LINE L2 2620 2977 -337 684 297 35 9 chr1 61828886 61829118 -220364546 + LTR16A LTR ERVL 18 255 -195 1243 137 0 34 chr1 61829120 61829325 -220364339 + AluJo SINE Alu 85 282 -30 180 0 0 0 chr1 61829327 61829347 -220364317 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 188 33 0 33 chr1 61829351 61829381 -220364283 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2348 59 42 0 chr1 61829392 61829680 -220363984 + AluYa5 SINE Alu 1 300 -11 1609 169 15 30 chr1 61829689 61829955 -220363709 + AluJb SINE Alu 11 272 -40 1292 154 15 0 chr1 61829955 61830156 -220363508 + AluJo SINE Alu 2 205 -107 251 222 0 14 chr1 61830179 61830251 -220363413 + GA-rich Low_complexity Low_complexity 1 71 0 927 156 0 0 chr1 61830272 61830451 -220363213 + GA-rich Low_complexity Low_complexity 2 180 0 1045 114 0 22 chr1 61830454 61830638 -220363026 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1014 144 0 0 chr1 61830650 61830830 -220362834 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 215 185 0 19 chr1 61830832 61830886 -220362778 + GA-rich Low_complexity Low_complexity 4 56 0 520 255 34 0 chr1 61830896 61831045 -220362619 + LTR16A LTR ERVL 258 411 -39 433 294 79 0 chr1 61831199 61831325 -220362339 + L2 LINE L2 3137 3272 0 201 245 41 0 chr1 61832115 61832164 -220361500 - MIR SINE MIR -116 92 42 235 301 39 10 chr1 61832188 61832291 -220361373 - L2 LINE L2 -17 3255 3150 306 0 0 0 chr1 61832298 61832332 -220361332 + (CA)n Simple_repeat Simple_repeat 2 35 0 339 88 176 0 chr1 61832461 61832529 -220361135 + FLAM_A SINE Alu 44 123 -10 336 24 0 0 chr1 61832529 61832540 -220361124 + (CA)n Simple_repeat Simple_repeat 1 52 0 336 24 0 0 chr1 61832540 61832581 -220361083 + (CA)n Simple_repeat Simple_repeat 2 42 0 228 248 112 62 chr1 61832692 61832853 -220360811 + L2 LINE L2 2587 2755 -559 283 321 138 6 chr1 61832877 61833036 -220360628 - MIR3 SINE MIR -11 197 18 237 217 87 54 chr1 61833120 61833212 -220360452 - MIR3 SINE MIR -5 203 109 312 219 61 70 chr1 61833277 61833391 -220360273 - MIR SINE MIR -70 192 80 324 278 22 0 chr1 61834925 61835015 -220358649 - MIR SINE MIR -61 147 56 216 226 40 105 chr1 61835049 61835173 -220358491 + MIR SINE MIR 21 136 -72 406 292 71 12 chr1 61835752 61835920 -220357744 - MIR SINE MIR -77 185 8 204 234 117 13 chr1 61835970 61836047 -220357617 - MIR SINE MIR -90 118 34 218 135 54 0 chr1 61836324 61836361 -220357303 + CT-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr1 61837029 61837049 -220356615 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 264 326 65 60 chr1 61837215 61837399 -220356265 - MIR SINE MIR -18 244 60 341 258 32 65 chr1 61837475 61837599 -220356065 - MIR3 SINE MIR -14 194 75 182 293 52 0 chr1 61837617 61837675 -220355989 - L2 LINE L2 -51 3262 3202 2265 84 28 0 chr1 61837676 61837962 -220355702 - AluSp SINE Alu -19 294 1 313 260 79 39 chr1 61838043 61838170 -220355494 - L2 LINE L2 -186 3086 2955 310 181 11 106 chr1 61838241 61838306 -220355358 - MER53 DNA DNA -1 188 133 1685 66 229 0 chr1 61838306 61838564 -220355100 - AluYb8 SINE Alu 0 318 2 310 181 11 106 chr1 61838564 61838592 -220355072 - MER53 DNA DNA -56 133 104 2561 97 14 0 chr1 61838594 61838944 -220354720 + THE1A LTR MaLR 1 355 0 2825 63 19 29 chr1 61838944 61839306 -220354358 + THE1A-int LTR MaLR 1 360 -1220 2280 112 0 3 chr1 61839306 61839611 -220354053 - AluSx SINE Alu -8 304 1 2825 63 19 29 chr1 61839611 61839658 -220354006 + THE1A-int LTR MaLR 360 406 -1174 454 83 17 0 chr1 61839658 61839718 -220353946 + Alu SINE Alu 2 62 -256 683 136 25 0 chr1 61839818 61839936 -220353728 - L1MA8 LINE L1 -28 6263 6143 * 1280 102 0 22 chr1 61839913 61840139 -220353525 - L1 LINE L1 -1511 4635 4415 3257 241 64 90 chr1 61840139 61840230 -220353434 + L1ME1 LINE L1 2860 2952 -3194 2022 141 20 0 chr1 61840230 61840534 -220353130 + AluJb SINE Alu 1 310 -2 3257 241 64 90 chr1 61840534 61841042 -220352622 + L1ME1 LINE L1 2952 3472 -2674 2224 119 0 0 chr1 61841042 61841337 -220352327 + AluSc SINE Alu 1 295 -14 3257 241 64 90 chr1 61841337 61842369 -220351295 + L1ME1 LINE L1 3472 4449 -1697 290 381 0 0 chr1 61843005 61843173 -220350491 + (TGG)n Simple_repeat Simple_repeat 1 168 0 1346 204 55 48 chr1 61843671 61844036 -220349628 + L1ME1 LINE L1 4418 4788 -1358 1995 149 0 7 chr1 61844036 61844337 -220349327 + AluSx SINE Alu 1 299 -13 1346 204 55 48 chr1 61844337 61844387 -220349277 + L1ME1 LINE L1 4788 4836 -1310 365 219 0 0 chr1 61844401 61844474 -220349190 - FRAM SINE Alu -74 92 20 1472 206 40 48 chr1 61844474 61844515 -220349149 + L1ME1 LINE L1 5630 5670 -496 2369 93 3 0 chr1 61844515 61844815 -220348849 + AluSp SINE Alu 1 301 -12 1472 206 40 48 chr1 61844815 61845272 -220348392 + L1ME1 LINE L1 5670 6071 -95 252 247 0 11 chr1 61845236 61845325 -220348339 - L1MC4 LINE L1 -1341 6701 6614 * 304 245 10 59 chr1 61845336 61845438 -220348226 + L1MC4 LINE L1 6607 6703 -1339 374 171 68 0 chr1 61845442 61845530 -220348134 + L1MA10 LINE L1 6241 6334 0 2381 104 0 0 chr1 61845534 61845842 -220347822 + AluSc SINE Alu 1 308 -1 414 294 52 26 chr1 61845850 61845921 -220347743 + L1MC4a LINE L1 5755 5823 -1985 691 191 7 37 chr1 61845921 61846057 -220347607 + FLAM_C SINE Alu 1 132 -1 414 294 52 26 chr1 61846057 61846138 -220347526 + L1MC4a LINE L1 5823 5911 -1897 451 191 0 24 chr1 61846335 61846419 -220347245 - LTR2B LTR ERV1 0 490 409 2464 74 6 3 chr1 61846952 61847263 -220346401 - AluSq SINE Alu -1 312 1 257 323 61 0 chr1 61847508 61847607 -220346057 + L2 LINE L2 3164 3268 -4 261 279 23 0 chr1 61848915 61849001 -220344663 + (TTCA)n Simple_repeat Simple_repeat 3 90 0 392 286 53 92 chr1 61849016 61849203 -220344461 - L2 LINE L2 0 3272 3079 251 28 28 0 chr1 61849203 61849239 -220344425 + (TG)n Simple_repeat Simple_repeat 1 37 0 392 286 53 92 chr1 61849239 61849519 -220344145 - L2 LINE L2 -193 3079 2823 366 300 107 7 chr1 61849787 61849937 -220343727 - L2 LINE L2 0 3272 3108 555 328 72 8 chr1 61850310 61850545 -220343119 + MIR SINE MIR 12 261 -1 2288 83 13 22 chr1 61850609 61850747 -220342917 + AluSx SINE Alu 1 139 -173 2538 60 3 0 chr1 61850747 61851045 -220342619 + AluY SINE Alu 1 299 -12 2288 83 13 22 chr1 61851045 61851220 -220342444 + AluSx SINE Alu 139 311 -1 200 214 0 0 chr1 61851220 61851262 -220342402 + MIR SINE MIR 111 152 -56 966 210 34 0 chr1 61851276 61851452 -220342212 + MER5A DNA MER1_type 6 187 -2 325 271 125 14 chr1 61851845 61851989 -220341675 + MIR3 SINE MIR 1 160 -48 222 300 112 50 chr1 61852310 61852587 -220341077 + L2 LINE L2 2888 3181 -91 264 317 86 3 chr1 61852589 61852709 -220340955 - MIR SINE MIR -86 122 42 463 354 116 37 chr1 61854706 61855355 -220338309 + L2 LINE L2 2555 3269 -3 889 164 96 0 chr1 61855605 61855782 -220337882 - MIR SINE MIR -51 211 18 1866 160 0 28 chr1 61856138 61856456 -220337208 + AluJb SINE Alu 1 309 -3 2206 103 30 0 chr1 61856464 61856765 -220336899 + AluSx SINE Alu 1 310 -2 1134 134 21 16 chr1 61857308 61857535 -220336129 - AluSg/x SINE Alu 0 349 122 189 281 281 0 chr1 61857682 61857778 -220335886 + MIR3 SINE MIR 79 201 -7 1973 108 19 29 chr1 61858088 61858395 -220335269 - AluSx SINE Alu -8 304 1 2417 80 3 0 chr1 61858404 61858737 -220334927 - AluSp SINE Alu 0 334 1 234 205 0 0 chr1 61858843 61858882 -220334782 + AluJb SINE Alu 1 39 -262 5994 97 5 1 chr1 61858984 61859854 -220333810 + THE1A-int LTR MaLR 708 1580 0 2559 93 8 8 chr1 61859856 61860209 -220333455 + THE1A LTR MaLR 3 355 0 355 147 15 0 chr1 61860209 61860277 -220333387 - MER53 DNA DNA -83 106 38 2053 108 4 0 chr1 61860295 61860594 -220333070 - AluSg SINE Alu 0 300 1 1432 163 4 62 chr1 61860646 61860922 -220332742 + AluJb SINE Alu 21 280 -32 2056 134 0 7 chr1 61860927 61861226 -220332438 + AluSq SINE Alu 4 300 -13 2387 92 0 0 chr1 61861226 61861532 -220332132 + AluSg SINE Alu 1 306 -4 364 274 0 11 chr1 61861547 61861642 -220332022 + MIR SINE MIR 57 150 -112 431 344 68 11 chr1 61862361 61862568 -220331096 + MIR SINE MIR 30 246 -16 1795 161 17 10 chr1 61862602 61862901 -220330763 - AluJb SINE Alu -11 301 1 1046 244 91 39 chr1 61863209 61863595 -220330069 + MER115 DNA AcHobo 29 434 -259 322 296 155 0 chr1 61863814 61863962 -220329702 - MIR SINE MIR -20 242 70 272 299 187 55 chr1 61864219 61864694 -220328970 + L2 LINE L2 2356 2893 -421 368 306 145 27 chr1 61864828 61865014 -220328650 - MIR SINE MIR -47 215 8 24 32 0 0 chr1 61865391 61865422 -220328242 + GC_rich Low_complexity Low_complexity 1 31 0 488 298 58 21 chr1 61865481 61865672 -220327992 + MIR3 SINE MIR 4 201 -7 232 324 68 14 chr1 61865770 61865918 -220327746 - MIR3 SINE MIR -8 200 45 193 196 43 0 chr1 61866241 61866287 -220327377 - MIR SINE MIR -182 80 33 217 177 25 0 chr1 61866735 61866814 -220326850 + (CA)n Simple_repeat Simple_repeat 1 81 0 335 241 0 35 chr1 61866827 61866859 -220326805 + CT-rich Low_complexity Low_complexity 1 33 -79 209 33 33 0 chr1 61866859 61866889 -220326775 + (CA)n Simple_repeat Simple_repeat 1 31 0 335 241 0 35 chr1 61866889 61866934 -220326730 + CT-rich Low_complexity Low_complexity 33 75 -37 290 87 22 0 chr1 61866934 61866980 -220326684 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 241 0 35 chr1 61866980 61867017 -220326647 + CT-rich Low_complexity Low_complexity 75 112 0 198 0 0 0 chr1 61867066 61867088 -220326576 + (TCTCCC)n Simple_repeat Simple_repeat 3 24 0 788 175 0 29 chr1 61867600 61867737 -220325927 - FLAM_A SINE Alu 0 133 1 189 310 14 14 chr1 61867875 61867946 -220325718 + L2 LINE L2 2987 3057 -215 2254 85 0 0 chr1 61868652 61868964 -220324700 - AluY SINE Alu 0 313 2 1216 213 133 44 chr1 61869076 61869425 -220324239 + MER113 DNA MER1_type? 6 409 -112 2160 117 7 0 chr1 61869425 61869732 -220323932 - AluSx SINE Alu -3 309 1 1216 213 133 44 chr1 61869732 61869856 -220323808 + MER113 DNA MER1_type? 409 521 0 195 214 50 150 chr1 61869936 61870076 -220323588 + MIR3 SINE MIR 1 126 -82 423 291 42 30 chr1 61870392 61870557 -220323107 + L2 LINE L2 2911 3077 -195 * 539 242 8 32 chr1 61870553 61870677 -220322987 - L2 LINE L2 0 3313 3193 1417 112 0 96 chr1 61871382 61871633 -220322031 - MER30 DNA MER1_type -1 229 3 427 267 83 0 chr1 61871786 61871906 -220321758 + MIR SINE MIR 76 205 -57 297 297 130 67 chr1 61872077 61872346 -220321318 - L2 LINE L2 0 3313 3028 1967 92 66 0 chr1 61872670 61872943 -220320721 - AluSx SINE Alu -16 296 6 1245 142 39 0 chr1 61873008 61873212 -220320452 - AluJo SINE Alu -16 296 85 426 91 0 0 chr1 61873212 61873267 -220320397 - AluSg/x SINE Alu -62 248 194 1126 223 117 46 chr1 61873267 61873549 -220320115 - AluJo SINE Alu 0 302 1 604 184 52 131 chr1 61873551 61873638 -220320026 - MER33 DNA MER1_type -2350 235 143 1615 152 67 0 chr1 61873638 61873907 -220319757 - AluJo SINE Alu -25 287 1 604 184 52 131 chr1 61873907 61873925 -220319739 - MER33 DNA MER1_type -2442 143 125 2298 101 3 0 chr1 61873925 61874232 -220319432 + AluSp SINE Alu 1 308 -5 604 184 52 131 chr1 61874232 61874392 -220319272 - MER33 DNA MER1_type -2460 125 1 576 365 115 20 chr1 61874443 61875089 -220318575 - L2 LINE L2 -341 2973 2267 417 293 6 58 chr1 61875066 61875240 -220318424 + L3 LINE CR1 1403 1567 -10 * 2381 57 24 0 chr1 61875493 61875790 -220317874 - AluY SINE Alu -7 304 1 456 139 0 14 chr1 61876493 61876565 -220317099 + AluJ/FRAM SINE Alu 228 298 -14 2040 99 9 56 chr1 61876686 61877010 -220316654 - AluSx SINE Alu 0 312 4 189 74 0 0 chr1 61877096 61877123 -220316541 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 337 202 0 96 chr1 61877371 61877475 -220316189 - L2 LINE L2 -1 3312 3219 21 57 0 0 chr1 61878905 61878940 -220314724 + GC_rich Low_complexity Low_complexity 1 35 0 402 240 29 0 chr1 61880389 61880493 -220313171 - MIR3 SINE MIR -12 196 90 206 282 42 0 chr1 61880886 61880957 -220312707 + MIR3 SINE MIR 111 184 -24 203 133 0 0 chr1 61881047 61881077 -220312587 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 254 93 0 23 chr1 61881095 61881138 -220312526 + (TCCCC)n Simple_repeat Simple_repeat 3 44 0 376 324 159 23 chr1 61881734 61882086 -220311578 - L2 LINE L2 -41 3231 2832 1497 122 15 107 chr1 61882229 61882557 -220311107 - AluJb SINE Alu -14 298 1 2316 92 3 0 chr1 61882559 61882862 -220310802 - AluSc SINE Alu -5 304 1 279 0 0 0 chr1 61882864 61882895 -220310769 + (TA)n Simple_repeat Simple_repeat 2 32 0 2426 75 3 0 chr1 61882895 61883201 -220310463 - AluSp SINE Alu -6 307 1 989 114 0 0 chr1 61883203 61883335 -220310329 - AluSq/x SINE Alu -176 136 5 858 169 0 0 chr1 61883525 61883667 -220309997 + FLAM_C SINE Alu 1 142 -1 2169 118 10 0 chr1 61883719 61884024 -220309640 + AluSx SINE Alu 1 308 -4 355 379 63 36 chr1 61884059 61884471 -220309193 + L2 LINE L2 2839 3261 -11 309 231 0 0 chr1 61884515 61884580 -220309084 - MIR SINE MIR 0 262 198 936 142 0 0 chr1 61884581 61884722 -220308942 - FLAM_C SINE Alu -2 141 1 257 275 99 0 chr1 61884734 61884825 -220308839 - MIR SINE MIR -82 180 81 239 141 141 28 chr1 61884827 61884898 -220308766 + L1ME2 LINE L1 6086 6164 0 231 279 33 0 chr1 61885001 61885062 -220308602 - MIR SINE MIR -177 85 23 475 228 132 37 chr1 61885682 61885871 -220307793 + MIR SINE MIR 54 260 -2 431 363 42 53 chr1 61886053 61886142 -220307522 - L1ME LINE L1 -339 5823 5734 2114 108 7 0 chr1 61886142 61886437 -220307227 + AluSx SINE Alu 9 305 -7 431 363 42 53 chr1 61886437 61886780 -220306884 - L1ME LINE L1 -428 5734 5396 342 305 109 0 chr1 61887059 61887187 -220306477 - L2 LINE L2 -6 3266 3125 1180 243 49 43 chr1 61887902 61888489 -220305175 + MLT1G1 LTR MaLR 1 555 0 241 280 93 0 chr1 61888537 61888612 -220305052 + L2 LINE L2 3232 3313 0 275 259 58 79 chr1 61888616 61888755 -220304909 - L2 LINE L2 -139 3133 2998 277 244 99 23 chr1 61889162 61889293 -220304371 - MIR3 SINE MIR -14 194 54 185 333 113 53 chr1 61889271 61889421 -220304243 - MIR3 SINE MIR -14 194 36 * 279 297 135 34 chr1 61889736 61889884 -220303780 - MIR SINE MIR -69 193 31 23 68 0 0 chr1 61890049 61890093 -220303571 + GC_rich Low_complexity Low_complexity 1 44 0 244 200 250 12 chr1 61890592 61890672 -220302992 + MIR SINE MIR 38 136 -72 2206 99 3 6 chr1 61891055 61891367 -220302297 - AluSq SINE Alu -2 311 1 2120 114 6 19 chr1 61891375 61891691 -220301973 - AluSx SINE Alu 0 312 1 245 240 39 58 chr1 61891928 61892032 -220301632 - MIR3 SINE MIR -92 116 15 238 288 167 0 chr1 61892506 61892638 -220301026 + L2 LINE L2 2920 3073 -240 697 284 57 35 chr1 61892923 61893152 -220300512 - MIR SINE MIR -18 244 11 863 205 53 6 chr1 61893373 61893544 -220300120 + FRAM SINE Alu 1 174 -2 4343 73 2 11 chr1 61893553 61893977 -220299687 + MER41A LTR ERV1 1 420 -134 2068 124 3 3 chr1 61893977 61894275 -220299389 - AluSp SINE Alu -15 298 1 4343 73 2 11 chr1 61894275 61894409 -220299255 + MER41A LTR ERV1 420 554 0 417 147 32 11 chr1 61894409 61894494 -220299170 + GA-rich Low_complexity Low_complexity 8 97 0 807 138 0 3 chr1 61894495 61894719 -220298945 + AluSx SINE Alu 3 293 -17 2230 110 0 0 chr1 61894719 61895027 -220298637 + AluSc SINE Alu 1 308 -1 2214 104 0 7 chr1 61895031 61895338 -220298326 + AluSg SINE Alu 1 305 -5 2207 94 0 10 chr1 61895338 61895636 -220298028 + AluSq SINE Alu 1 296 -17 1300 174 12 127 chr1 61895638 61895812 -220297852 + AluJo SINE Alu 2 113 -251 2127 101 7 7 chr1 61895812 61896109 -220297555 + AluSq SINE Alu 1 297 -16 1300 174 12 127 chr1 61896109 61896336 -220297328 + AluJo SINE Alu 113 364 0 2205 114 3 0 chr1 61896445 61896751 -220296913 - AluSg SINE Alu -3 307 1 187 278 93 0 chr1 61897317 61897371 -220296293 - L2 LINE L2 0 3272 3214 201 328 102 21 chr1 61897527 61897713 -220295951 - L2 LINE L2 -257 3015 2815 946 203 55 0 chr1 61897741 61897904 -220295760 - FAM SINE Alu -3 172 1 1907 141 0 56 chr1 61898544 61898713 -220294951 - AluSx SINE Alu -11 301 124 198 0 0 0 chr1 61898721 61898743 -220294921 + (TG)n Simple_repeat Simple_repeat 1 22 0 1872 139 32 0 chr1 61898743 61899015 -220294649 - AluSq SINE Alu -28 285 2 2427 54 14 0 chr1 61899017 61899313 -220294351 - AluSp SINE Alu -13 300 1 1907 141 0 56 chr1 61899313 61899459 -220294205 - AluSx SINE Alu -189 123 1 2029 149 0 13 chr1 61899468 61899784 -220293880 - AluSx SINE Alu 0 312 1 2266 93 0 0 chr1 61900340 61900630 -220293034 + AluSc SINE Alu 1 290 -19 1634 150 44 10 chr1 61900888 61901161 -220292503 + AluJb SINE Alu 1 286 -26 450 0 0 0 chr1 61901161 61901211 -220292453 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 1634 150 44 10 chr1 61901211 61901230 -220292434 + AluJb SINE Alu 286 303 -9 316 210 151 17 chr1 61901283 61901402 -220292262 - MLT1A1 LTR MaLR -5 537 403 2320 233 58 10 chr1 61901869 61902385 -220291279 + MLT1F LTR MaLR 1 541 -1 1951 170 0 43 chr1 61902392 61902530 -220291134 - MLT1A1 LTR MaLR -11 354 212 2437 85 0 0 chr1 61902530 61902823 -220290841 - AluSc SINE Alu -16 293 1 1951 170 0 43 chr1 61902823 61903054 -220290610 - MLT1A1 LTR MaLR -153 212 1 228 284 45 0 chr1 61903760 61903827 -220289837 - LTR16C LTR ERVL -1 490 421 426 238 221 22 chr1 61903891 61904072 -220289592 - LTR16C LTR ERVL -186 305 89 2130 120 13 0 chr1 61904437 61904738 -220288926 + AluSx SINE Alu 8 312 0 1139 285 108 24 chr1 61904816 61904990 -220288674 + MLT1K LTR MaLR 85 243 -345 2424 84 0 0 chr1 61904990 61905289 -220288375 + AluSg SINE Alu 1 299 -11 1139 285 108 24 chr1 61905289 61905577 -220288087 + MLT1K LTR MaLR 243 586 -2 2381 88 0 7 chr1 61905625 61905931 -220287733 + AluSq SINE Alu 1 304 -9 1603 179 0 75 chr1 61905957 61906276 -220287388 + AluSx SINE Alu 18 312 0 1425 147 110 77 chr1 61906283 61906556 -220287108 - AluJo SINE Alu -30 282 1 2095 156 0 0 chr1 61906590 61906885 -220286779 - AluJb SINE Alu -16 296 2 563 251 82 6 chr1 61907733 61907904 -220285760 + MIR SINE MIR 65 248 -14 380 336 7 7 chr1 61907995 61908144 -220285520 + (TG)n Simple_repeat Simple_repeat 2 150 0 200 206 0 0 chr1 61908187 61908221 -220285443 + (CAG)n Simple_repeat Simple_repeat 1 34 0 401 294 72 13 chr1 61908650 61908803 -220284861 + MIR3 SINE MIR 32 193 -15 1129 181 10 0 chr1 61908987 61909192 -220284472 + MER3 DNA MER1_type 3 209 0 441 81 0 0 chr1 61909216 61909278 -220284386 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 342 261 88 122 chr1 61909278 61909866 -220283798 - L2 LINE L2 -11 3302 2727 2216 119 0 7 chr1 61909990 61910300 -220283364 + AluSx SINE Alu 1 308 0 295 246 24 63 chr1 61910767 61910893 -220282771 - MIR SINE MIR -56 206 86 618 307 84 13 chr1 61910922 61911160 -220282504 + MIR SINE MIR 8 262 0 1075 83 0 0 chr1 61911477 61911610 -220282054 + AluSp SINE Alu 1 133 -180 555 16 0 0 chr1 61911629 61911693 -220281971 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 422 295 24 51 chr1 61911693 61911828 -220281836 + L1ME LINE L1 4583 4709 -1437 2385 109 44 53 chr1 61911828 61911879 -220281785 - MSTA LTR MaLR 0 428 378 2023 153 0 10 chr1 61911879 61912187 -220281477 - AluJb SINE Alu -7 305 1 2385 109 44 53 chr1 61912187 61912565 -220281099 - MSTA LTR MaLR -50 378 3 422 295 24 51 chr1 61912565 61912683 -220280981 + L1ME LINE L1 4709 4829 -1317 471 174 139 26 chr1 61912714 61912829 -220280835 + MIR SINE MIR 1 128 -134 356 292 161 0 chr1 61912833 61913001 -220280663 + L1ME LINE L1 4885 5079 -1067 2156 114 10 7 chr1 61913039 61913345 -220280319 + AluSx SINE Alu 5 311 -1 612 164 136 50 chr1 61913373 61913513 -220280151 + FRAM SINE Alu 1 152 -24 326 216 34 34 chr1 61913519 61913607 -220280057 - L1MCa LINE L1 -4358 2068 1981 381 179 2 29 chr1 61913645 61913734 -220279930 + AluJ/FLAM SINE Alu 1 71 -231 1694 174 0 34 chr1 61913875 61914205 -220279459 + AluJo SINE Alu 1 320 0 2353 84 0 46 chr1 61914303 61914626 -220279038 + AluSc SINE Alu 1 308 -1 886 252 92 46 chr1 61914663 61915140 -220278524 + L1ME LINE L1 5272 5770 -392 1838 161 50 7 chr1 61915276 61915575 -220278089 + AluJb SINE Alu 1 312 0 205 207 17 35 chr1 61915860 61915873 -220277791 + (TAAA)n Simple_repeat Simple_repeat 2 14 -44 1140 149 79 0 chr1 61915873 61916101 -220277563 + L1MC2 LINE L1 6090 6335 -9 205 207 17 35 chr1 61916101 61916145 -220277519 + (TAAA)n Simple_repeat Simple_repeat 14 58 0 1939 175 3 0 chr1 61916409 61916718 -220276946 - AluJb SINE Alu -2 310 1 2234 129 0 3 chr1 61916803 61917114 -220276550 - AluSq SINE Alu -3 310 1 24 0 0 0 chr1 61917117 61917141 -220276523 + AT_rich Low_complexity Low_complexity 1 24 0 246 287 53 11 chr1 61917144 61917238 -220276426 + HAL1 LINE L1 47 144 -2363 1853 139 57 38 chr1 61917366 61917734 -220275930 + THE1C LTR MaLR 1 375 0 867 223 127 118 chr1 61917835 61918169 -220275495 + HAL1 LINE L1 636 966 -1541 282 93 47 0 chr1 61918169 61918212 -220275452 + U6 snRNA snRNA 2 46 -61 867 223 127 118 chr1 61918212 61918263 -220275401 + HAL1 LINE L1 966 1015 -1492 2320 94 0 13 chr1 61918263 61918572 -220275092 + AluSg SINE Alu 1 305 -5 2221 121 3 16 chr1 61918582 61918895 -220274769 + AluSx SINE Alu 1 309 -3 867 223 127 118 chr1 61918895 61919275 -220274389 + HAL1 LINE L1 1023 1462 -1045 1660 244 23 85 chr1 61919296 61919828 -220273836 - MLT1J LTR MaLR -7 504 6 1957 152 3 20 chr1 61919862 61920159 -220273505 - AluJo SINE Alu -20 292 1 322 293 96 43 chr1 61920207 61920395 -220273269 + LTR50 LTR ERVL 1 198 -597 492 251 106 69 chr1 61920465 61920849 -220272815 + LTR33A LTR ERVL 347 783 -12 1429 169 107 7 chr1 61920975 61921247 -220272417 - AluJo SINE Alu -13 299 1 2311 114 3 3 chr1 61921514 61921821 -220271843 - AluSx SINE Alu -5 307 1 277 240 0 13 chr1 61921873 61921948 -220271716 - MLT1I LTR MaLR -4 405 332 255 303 90 8 chr1 61921994 61922116 -220271548 + HAL1 LINE L1 1829 1960 -547 343 293 53 15 chr1 61922134 61922267 -220271397 + HAL1 LINE L1 1991 2128 -379 1371 120 0 37 chr1 61922374 61922591 -220271073 + AluSg/x SINE Alu 92 300 -10 328 263 35 41 chr1 61922638 61922809 -220270855 + HAL1b LINE L1 746 915 -433 482 299 13 30 chr1 61922932 61923163 -220270501 + HAL1 LINE L1 2276 2502 -5 1343 117 0 21 chr1 61923175 61923192 -220270472 + AluSg/x SINE Alu 120 136 -176 2565 60 3 7 chr1 61923192 61923493 -220270171 + AluY SINE Alu 1 300 -11 1343 117 0 21 chr1 61923493 61923663 -220270001 + AluSg/x SINE Alu 136 303 -9 1259 31 0 19 chr1 61923700 61923862 -220269802 + L1PA3 LINE L1 5997 6155 0 1266 144 62 10 chr1 61923946 61924154 -220269510 - AluJb SINE Alu -30 282 64 5017 127 30 29 chr1 61924314 61924394 -220269270 - L1MA6 LINE L1 -429 5871 5793 396 0 0 0 chr1 61924394 61924438 -220269226 + (TG)n Simple_repeat Simple_repeat 2 45 0 5017 127 30 29 chr1 61924438 61924455 -220269209 - L1MA6 LINE L1 -507 5793 5778 1736 166 30 17 chr1 61924455 61924751 -220268913 - AluJo SINE Alu -12 300 1 5017 127 30 29 chr1 61924751 61925056 -220268608 - L1MA6 LINE L1 -522 5778 5475 2213 99 0 7 chr1 61925056 61925362 -220268302 - AluSg SINE Alu 0 304 1 5017 127 30 29 chr1 61925362 61925837 -220267827 - L1MA6 LINE L1 -825 5475 5002 2396 108 0 10 chr1 61925837 61926151 -220267513 - AluSx SINE Alu -1 311 1 5017 127 30 29 chr1 61926151 61926691 -220266973 - L1MA6 LINE L1 -1298 5002 4457 2248 115 0 3 chr1 61926691 61926986 -220266678 - AluSx SINE Alu -18 294 1 5017 127 30 29 chr1 61926986 61927011 -220266653 - L1MA6 LINE L1 -1843 4457 4434 1060 177 6 0 chr1 61927011 61927186 -220266478 - AluJo SINE Alu -14 298 123 25 0 0 0 chr1 61927186 61927211 -220266453 + AT_rich Low_complexity Low_complexity 1 25 0 2503 95 0 0 chr1 61927215 61927521 -220266143 + AluSg SINE Alu 1 306 -4 772 167 0 0 chr1 61927561 61927681 -220265983 - FLAM_A SINE Alu -12 121 2 2366 127 41 0 chr1 61927682 61927713 -220265951 - L1MA6 LINE L1 -1703 4443 4415 189 0 0 0 chr1 61927713 61927734 -220265930 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2366 127 41 0 chr1 61927734 61928095 -220265569 - L1MA6 LINE L1 -1731 4415 4035 633 193 80 0 chr1 61928435 61928585 -220265079 - MIR SINE MIR -62 200 39 395 248 19 116 chr1 61928608 61928866 -220264798 - L2 LINE L2 -249 3064 2832 194 289 124 16 chr1 61929105 61929226 -220264438 - MIR SINE MIR -65 197 64 199 139 0 0 chr1 61929559 61929595 -220264069 + MIR SINE MIR 101 136 -72 252 330 143 40 chr1 61930206 61930479 -220263185 - L2 LINE L2 -62 3210 2910 928 156 198 55 chr1 61930637 61930830 -220262834 - AluJo SINE Alu -7 295 55 2306 65 4 4 chr1 61930830 61931105 -220262559 - AluSq SINE Alu -17 296 22 928 156 198 55 chr1 61931105 61931168 -220262496 - AluJo SINE Alu -247 55 2 7285 54 5 43 chr1 61931198 61932281 -220261383 - SVA Other Other -629 1386 433 1321 45 7 26 chr1 61932400 61932710 -220260954 - SVA Other Other -520 866 665 2839 80 38 90 chr1 61932730 61933230 -220260434 - SVA Other Other -520 866 393 762 158 0 0 chr1 61933335 61933455 -220260209 - FLAM_C SINE Alu -12 121 2 375 281 68 73 chr1 61933515 61933707 -220259957 + MIR SINE MIR 57 247 -15 1940 123 15 55 chr1 61933810 61933947 -220259717 + AluJb SINE Alu 1 142 -170 2297 105 0 20 chr1 61933947 61934252 -220259412 + AluSx SINE Alu 1 299 -13 1940 123 15 55 chr1 61934252 61934439 -220259225 + AluJb SINE Alu 142 312 0 181 194 0 0 chr1 61934935 61934966 -220258698 + MIR SINE MIR 117 147 -115 271 376 113 24 chr1 61935633 61935846 -220257818 + MIR SINE MIR 27 258 -4 359 274 157 92 chr1 61935911 61936344 -220257320 + L2 LINE L2 1617 2021 -1293 2374 94 7 0 chr1 61936344 61936643 -220257021 + AluSx SINE Alu 1 301 -11 359 274 157 92 chr1 61936643 61936688 -220256976 + L2 LINE L2 2021 2062 -1252 2031 232 90 6 chr1 61936688 61937200 -220256464 - MLT1H1 LTR MaLR 0 555 1 359 274 157 92 chr1 61937200 61937433 -220256231 + L2 LINE L2 2062 2279 -1035 2460 89 0 9 chr1 61937433 61937748 -220255916 - AluSx SINE Alu 0 312 1 359 274 157 92 chr1 61937748 61938305 -220255359 + L2 LINE L2 2279 2969 -345 2374 100 3 0 chr1 61938528 61938828 -220254836 - AluSp SINE Alu -7 306 6 898 170 7 0 chr1 61938905 61939052 -220254612 - FRAM SINE Alu 0 40 1 1280 149 9 40 chr1 61939076 61939298 -220254366 + AluJb SINE Alu 84 298 -14 847 152 0 0 chr1 61939298 61939430 -220254234 - AluJo/FLAM SINE Alu -169 133 2 243 351 0 68 chr1 61939849 61940054 -220253610 - L3 LINE CR1 -638 939 749 196 265 20 0 chr1 61940137 61940186 -220253478 - L2 LINE L2 -5 3267 3218 204 307 109 0 chr1 61940237 61940338 -220253326 - L3 LINE CR1 -1221 356 245 1072 125 12 25 chr1 61940690 61940850 -220252814 - AluSg/x SINE Alu -18 294 137 2033 116 0 21 chr1 61940851 61941135 -220252529 - AluSx SINE Alu -17 295 18 314 183 0 0 chr1 61941159 61941219 -220252445 - MIR SINE MIR -22 240 181 320 73 0 55 chr1 61941237 61941292 -220252372 - Alu SINE Alu 0 302 251 232 294 0 24 chr1 61941302 61941387 -220252277 - MIR SINE MIR -108 154 72 304 275 6 50 chr1 61942252 61942439 -220251225 + CT-rich Low_complexity Low_complexity 1 306 0 464 315 64 21 chr1 61942871 61943106 -220250558 + L3 LINE CR1 1332 1576 -1 504 290 28 65 chr1 61943403 61943620 -220250044 + MIR SINE MIR 10 218 -44 2220 115 7 0 chr1 61943620 61943916 -220249748 + AluSx SINE Alu 1 298 -14 2345 94 10 0 chr1 61943919 61944217 -220249447 + AluSp SINE Alu 1 301 -12 193 222 32 48 chr1 61944289 61944352 -220249312 - MIR3 SINE MIR -53 155 94 290 235 86 0 chr1 61944686 61944767 -220248897 - MIR SINE MIR -54 208 121 318 294 29 7 chr1 61945934 61946070 -220247594 - L2 LINE L2 -261 3011 2873 1114 241 42 107 chr1 61946099 61946418 -220247246 - LTR26B LTR ERV1 -11 608 253 1515 141 144 4 chr1 61946418 61946688 -220246976 + AluJb SINE Alu 1 308 -4 1114 241 42 107 chr1 61946688 61946926 -220246738 - LTR26B LTR ERV1 -366 253 1 363 230 14 0 chr1 61947037 61947111 -220246553 - MIR3 SINE MIR -21 187 113 21 0 0 0 chr1 61947286 61947307 -220246357 + AT_rich Low_complexity Low_complexity 1 21 0 2677 166 43 66 chr1 61947307 61947974 -220245690 - L1MB5 LINE L1 -8 6166 5515 207 0 0 0 chr1 61948803 61948826 -220244838 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 38 39 0 0 chr1 61948956 61949008 -220244656 + AT_rich Low_complexity Low_complexity 1 52 0 232 310 0 0 chr1 61949055 61949113 -220244551 + L2 LINE L2 3215 3272 0 455 306 35 73 chr1 61950159 61950391 -220243273 - MIR SINE MIR -16 246 24 213 322 11 23 chr1 61951171 61951258 -220242406 - L2 LINE L2 -536 2778 2693 222 325 57 13 chr1 61952368 61952499 -220241165 - MIR3 SINE MIR -33 175 36 189 300 29 14 chr1 61953444 61953514 -220240150 + MIR SINE MIR 37 107 -101 431 291 30 8 chr1 61953782 61953916 -220239748 + MIR SINE MIR 119 255 -7 217 281 170 33 chr1 61955107 61955260 -220238404 + L2 LINE L2 2909 3082 -190 899 240 68 34 chr1 61955650 61955942 -220237722 - L2 LINE L2 -2 3311 3010 472 223 27 18 chr1 61956323 61956435 -220237229 + MIR3 SINE MIR 81 193 -15 369 322 57 71 chr1 61956512 61956578 -220237086 - L3 LINE CR1 -102 1475 1410 2121 126 0 7 chr1 61956578 61956887 -220236777 - AluSx SINE Alu -5 307 1 369 322 57 71 chr1 61956887 61957031 -220236633 - L3 LINE CR1 -167 1410 1268 227 333 64 50 chr1 61957200 61957341 -220236323 - L2 LINE L2 -2 3270 3128 2072 93 3 30 chr1 61957386 61957686 -220235978 + AluSg SINE Alu 1 292 -18 2393 86 0 10 chr1 61957704 61958017 -220235647 - AluSx SINE Alu -2 310 1 808 94 6 88 chr1 61958027 61958088 -220235576 - L1MC3 LINE L1 -13 7772 7708 1748 177 37 0 chr1 61958088 61958387 -220235277 + AluJb SINE Alu 1 310 -2 808 94 6 88 chr1 61958387 61958495 -220235169 - L1MC3 LINE L1 -77 7708 7617 818 240 20 20 chr1 61958505 61958709 -220234955 - MIR SINE MIR -56 206 3 180 0 0 0 chr1 61959178 61959198 -220234466 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1842 139 0 0 chr1 61959205 61959472 -220234192 - AluSx SINE Alu -45 267 1 189 0 0 0 chr1 61959473 61959494 -220234170 + (T)n Simple_repeat Simple_repeat 1 21 0 625 250 94 48 chr1 61959494 61959607 -220234057 - L1MC5 LINE L1 -250 7711 7605 1692 170 0 69 chr1 61959607 61959942 -220233722 - AluJo SINE Alu 0 312 1 625 250 94 48 chr1 61959942 61960002 -220233662 - L1MC5 LINE L1 -356 7605 7549 1949 104 0 0 chr1 61960002 61960272 -220233392 + AluY SINE Alu 41 310 -1 625 250 94 48 chr1 61960272 61960449 -220233215 - L1MC5 LINE L1 -412 7549 7344 336 238 72 110 chr1 61960781 61960913 -220232751 - L1MC4 LINE L1 0 8042 7907 1642 151 21 32 chr1 61960913 61961197 -220232467 - AluSx SINE Alu -15 297 17 336 238 72 110 chr1 61961197 61961354 -220232310 - L1MC4 LINE L1 -135 7907 7764 395 258 126 56 chr1 61961381 61961579 -220232085 - MIR SINE MIR -13 249 38 215 275 64 0 chr1 61961689 61961765 -220231899 - MIR SINE MIR -82 126 61 461 247 200 6 chr1 61961896 61962101 -220231563 + MIR SINE MIR 11 252 -10 378 323 93 45 chr1 61962170 61962461 -220231203 - L2 LINE L2 0 3272 2968 215 322 32 0 chr1 61962470 61962576 -220231088 + MIR SINE MIR 96 206 -51 387 294 39 20 chr1 61962897 61963050 -220230614 - MIR3 SINE MIR -19 189 34 1612 144 6 77 chr1 61963422 61963734 -220229930 - AluJo SINE Alu -2 310 21 553 271 17 17 chr1 61963776 61963966 -220229698 - MIR SINE MIR -43 219 30 2230 101 3 0 chr1 61965219 61965516 -220228148 + AluSq SINE Alu 1 298 -15 234 250 0 17 chr1 61965550 61965610 -220228054 + L1MCa LINE L1 2006 2064 -4362 359 290 31 8 chr1 61965676 61965863 -220227801 - L1MC4a LINE L1 -104 6017 5823 225 255 82 20 chr1 61965864 61965962 -220227702 - L2 LINE L2 -266 3006 2903 587 286 46 58 chr1 61966682 61966732 -220226932 - MIR SINE MIR -3 259 210 2063 125 3 7 chr1 61966732 61967029 -220226635 - AluSx SINE Alu -16 296 1 587 286 46 58 chr1 61967029 61967237 -220226427 - MIR SINE MIR -52 210 4 395 284 0 52 chr1 61968155 61968289 -220225375 + L2 LINE L2 2913 3039 -233 297 274 121 0 chr1 61968375 61968499 -220225165 - L2 LINE L2 -218 3054 2916 2034 119 34 0 chr1 61968723 61969017 -220224647 + AluSx SINE Alu 1 304 -8 2417 86 0 3 chr1 61969017 61969331 -220224333 + AluSq SINE Alu 1 313 0 279 0 0 0 chr1 61969331 61969362 -220224302 + (TA)n Simple_repeat Simple_repeat 1 31 0 752 278 58 0 chr1 61970053 61970258 -220223406 + MIR SINE MIR 12 228 -34 281 311 68 0 chr1 61970353 61970456 -220223208 + MIR SINE MIR 34 143 -65 1943 145 10 3 chr1 61970538 61970848 -220222816 + AluSx SINE Alu 1 312 0 337 319 92 11 chr1 61970960 61971145 -220222519 + L2 LINE L2 3108 3307 -6 576 217 0 0 chr1 61971204 61971342 -220222322 + (TG)n Simple_repeat Simple_repeat 2 139 0 246 289 221 0 chr1 61971849 61971953 -220221711 + MIR SINE MIR 49 175 -87 778 311 33 4 chr1 61972283 61972527 -220221137 + MIR SINE MIR 12 262 0 383 265 20 0 chr1 61972552 61972654 -220221010 - MIR SINE MIR -62 146 43 391 327 100 27 chr1 61972937 61973157 -220220507 - MIR SINE MIR -14 248 13 185 254 85 0 chr1 61973158 61973217 -220220447 - MIR SINE MIR -109 153 90 1747 113 3 46 chr1 61973226 61973508 -220220156 + AluSx SINE Alu 35 304 -8 289 246 305 8 chr1 61973616 61973734 -220219930 - MIR SINE MIR -12 250 98 212 240 20 0 chr1 61973909 61973959 -220219705 + L2 LINE L2 3213 3263 -9 253 358 55 9 chr1 61974228 61974337 -220219327 - MIR SINE MIR -62 146 33 262 380 0 8 chr1 61975064 61975185 -220218479 - MIR3 SINE MIR -77 131 12 433 196 36 51 chr1 61975521 61975659 -220218005 + MIR3 SINE MIR 19 154 -54 752 245 138 5 chr1 61976673 61976869 -220216795 + MIR SINE MIR 31 252 -10 229 357 0 29 chr1 61976957 61977097 -220216567 + (TATG)n Simple_repeat Simple_repeat 4 139 0 241 294 24 35 chr1 61977500 61977585 -220216079 + MIR SINE MIR 64 147 -61 310 273 157 58 chr1 61980775 61980947 -220212717 - MIR SINE MIR -54 208 20 204 298 118 45 chr1 61981169 61981290 -220212374 + MIR SINE MIR 48 188 -74 1800 94 135 4 chr1 61981290 61981557 -220212107 + AluSx SINE Alu 1 302 0 204 298 118 45 chr1 61981557 61981613 -220212051 + MIR SINE MIR 188 238 -24 725 331 85 22 chr1 61982168 61982570 -220211094 + L3 LINE CR1 1148 1574 -3 228 247 247 14 chr1 61983013 61983086 -220210578 + MIR SINE MIR 22 111 -151 2225 99 7 0 chr1 61983235 61983527 -220210137 + AluSp SINE Alu 2 295 -18 189 147 0 0 chr1 61983540 61983574 -220210090 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 840 173 0 0 chr1 61983591 61983724 -220209940 - FLAM_C SINE Alu 0 133 1 595 301 82 9 chr1 61983993 61984212 -220209452 + MIR SINE MIR 15 249 -13 189 284 108 0 chr1 61984228 61984302 -220209362 + MIR SINE MIR 120 201 -61 529 297 115 61 chr1 61984429 61984759 -220208905 - L2 LINE L2 -41 3231 2884 222 37 0 0 chr1 61985076 61985103 -220208561 + (TG)n Simple_repeat Simple_repeat 1 27 0 244 353 44 22 chr1 61985158 61985294 -220208370 + L3 LINE CR1 1367 1505 -72 343 263 113 48 chr1 61985446 61985739 -220207925 - L2 LINE L2 -459 2855 2544 272 213 228 24 chr1 61986366 61986508 -220207156 - L1ME4a LINE L1 -2 6119 6007 2145 85 7 36 chr1 61986508 61986815 -220206849 - AluSx SINE Alu -14 298 1 272 213 228 24 chr1 61986815 61986883 -220206781 - L1ME4a LINE L1 -114 6007 5866 676 151 19 0 chr1 61987040 61987146 -220206518 - FLAM_C SINE Alu -35 108 1 312 268 161 0 chr1 61987154 61987266 -220206398 - L1ME4a LINE L1 -514 5607 5478 376 367 18 47 chr1 61987495 61987770 -220205894 + L2 LINE L2 2625 2891 -423 * 383 305 90 12 chr1 61987767 61987859 -220205805 - MER5A DNA MER1_type -6 183 100 2137 112 10 10 chr1 61987859 61988171 -220205493 - AluSx SINE Alu 0 312 1 383 305 90 12 chr1 61988171 61988245 -220205419 - MER5A DNA MER1_type -89 100 4 196 256 37 37 chr1 61988284 61988366 -220205298 + L2 LINE L2 2955 3036 -236 2116 121 0 3 chr1 61988366 61988671 -220204993 + AluSx SINE Alu 1 304 -8 430 293 43 0 chr1 61988896 61989036 -220204628 + MIR SINE MIR 14 159 -103 310 137 20 0 chr1 61989238 61989289 -220204375 + MER5A DNA MER1_type 1 52 -137 442 309 22 14 chr1 61989442 61989581 -220204083 + MIR SINE MIR 3 142 -120 376 278 111 16 chr1 61989769 61989895 -220203769 + MIR SINE MIR 3 140 -122 261 298 82 47 chr1 61990326 61990497 -220203167 - L2 LINE L2 -182 3090 2914 1119 85 0 0 chr1 61990568 61990709 -220202955 + AluSq/x SINE Alu 1 141 -172 2065 116 3 13 chr1 61990711 61991022 -220202642 + AluSx SINE Alu 5 312 0 1978 134 3 7 chr1 61991022 61991320 -220202344 + AluSx SINE Alu 1 297 -15 2101 107 0 20 chr1 61991325 61991646 -220202018 + AluSx SINE Alu 7 312 0 258 286 84 17 chr1 61991935 61992054 -220201610 - L2 LINE L2 -877 2437 2311 2203 117 0 7 chr1 61992136 61992443 -220201221 + AluSx SINE Alu 1 305 -7 2072 96 31 0 chr1 61992443 61992734 -220200930 + AluSc SINE Alu 1 300 -9 988 170 0 6 chr1 61992734 61992893 -220200771 + AluSp SINE Alu 134 291 -22 2374 64 0 7 chr1 61993036 61993332 -220200332 + AluSq SINE Alu 1 294 -19 334 259 95 41 chr1 61993867 61994014 -220199650 + MIR3 SINE MIR 34 188 -20 2493 76 0 3 chr1 61995799 61996113 -220197551 + AluSp SINE Alu 1 313 0 2024 127 3 32 chr1 61996128 61996463 -220197201 + AluSx SINE Alu 7 332 0 235 305 34 0 chr1 61996662 61996721 -220196943 - MIR SINE MIR -62 146 86 2223 121 3 0 chr1 61996994 61997300 -220196364 - AluSx SINE Alu -5 307 1 308 206 48 0 chr1 61997613 61997676 -220195988 - L2 LINE L2 -6 3266 3201 254 167 0 54 chr1 61998510 61998767 -220194897 + AluJo SINE Alu 11 300 -2 301 365 19 39 chr1 61998795 61998921 -220194743 + L1MEd LINE L1 511 638 -5481 2154 129 3 0 chr1 61998921 61999231 -220194433 + AluSx SINE Alu 1 311 -1 301 365 19 39 chr1 61999231 61999416 -220194248 + L1MEd LINE L1 638 816 -5303 2249 108 0 0 chr1 61999422 61999729 -220193935 - AluY SINE Alu -4 307 1 1611 188 17 0 chr1 61999731 62000023 -220193641 - AluJo SINE Alu -15 297 1 2408 84 0 0 chr1 62000032 62000342 -220193322 - AluY SINE Alu -1 310 1 329 136 0 15 chr1 62000356 62000430 -220193234 + AluSx SINE Alu 9 55 -247 3435 113 47 4 chr1 62000430 62000919 -220192745 + MER9 LTR ERVK 2 511 0 15551 61 0 7 chr1 62000919 62003835 -220189829 + HERVK9 LTR ERVK 1 2898 -3018 6609 59 1 0 chr1 62003834 62004681 -220188983 + HERVK9 LTR ERVK 3093 3940 -1976 * 3402 85 6 5 chr1 62004714 62005594 -220188070 + HERVK9 LTR ERVK 4745 5641 -275 1590 69 14 5 chr1 62005680 62005897 -220187767 + HERVK9 LTR ERVK 5635 5853 -63 3217 111 62 19 chr1 62005926 62006264 -220187400 + MER9 LTR ERVK 1 368 -143 6812 84 35 43 chr1 62006264 62007241 -220186423 - LTR5 LTR ERVK 0 969 1 3217 111 62 19 chr1 62007241 62007388 -220186276 + MER9 LTR ERVK 368 507 -4 1630 169 0 0 chr1 62007388 62007636 -220186028 + AluSx SINE Alu 45 292 -20 2177 112 0 14 chr1 62007644 62007940 -220185724 + AluSx SINE Alu 1 292 -20 35 0 0 0 chr1 62008118 62008153 -220185511 + AT_rich Low_complexity Low_complexity 1 35 0 706 174 0 0 chr1 62008155 62008264 -220185400 - FLAM_C SINE Alu -33 110 2 267 313 93 0 chr1 62008350 62008500 -220185164 + L1M4c LINE L1 1533 1696 -4688 2011 135 7 0 chr1 62008515 62008796 -220184868 - AluSx SINE Alu -24 288 6 635 175 63 8 chr1 62008833 62008959 -220184705 - FLAM_C SINE Alu 0 133 1 2142 135 10 16 chr1 62009054 62009366 -220184298 + AluJb SINE Alu 3 312 0 935 198 18 40 chr1 62009382 62009609 -220184055 + AluJo SINE Alu 81 302 -10 528 246 29 23 chr1 62009737 62009912 -220183752 + L1ME LINE L1 6 181 -5889 1114 193 95 20 chr1 62009926 62010221 -220183443 + L1ME3A LINE L1 5854 6170 0 1728 164 7 30 chr1 62010660 62010965 -220182699 - AluJb SINE Alu -14 298 1 216 216 23 0 chr1 62011575 62011630 -220182034 + MIR SINE MIR 77 134 -74 267 295 319 6 chr1 62012355 62012528 -220181136 - MIR SINE MIR -10 252 27 1996 159 3 0 chr1 62012765 62013061 -220180603 - AluJb SINE Alu -15 297 1 180 0 0 0 chr1 62013137 62013157 -220180507 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 597 314 79 72 chr1 62013159 62013615 -220180049 - L2 LINE L2 -1 3271 2813 276 296 50 5 chr1 62013733 62013825 -220179839 + MER5A DNA MER1_type 39 144 -45 1816 218 175 28 chr1 62013919 62014515 -220179149 - L1MDb LINE L1 -4588 1952 1444 1980 146 0 0 chr1 62014515 62014789 -220178875 - AluSx SINE Alu -38 274 1 1816 218 175 28 chr1 62014789 62014830 -220178834 - L1MDb LINE L1 -5096 1444 1410 708 153 63 0 chr1 62014830 62014941 -220178723 - FLAM_C SINE Alu -15 118 1 2077 146 0 23 chr1 62014948 62015256 -220178408 - AluSx SINE Alu -11 301 1 1816 218 175 28 chr1 62015256 62015421 -220178243 - L1MDb LINE L1 -5135 1405 1265 2152 114 7 23 chr1 62015421 62015720 -220177944 - AluSx SINE Alu -11 301 8 1816 218 175 28 chr1 62015720 62015785 -220177879 - L1MDb LINE L1 -5275 1265 937 2033 152 7 3 chr1 62015790 62016100 -220177564 - AluJb SINE Alu -1 311 1 361 259 0 0 chr1 62016195 62016280 -220177384 - L1MDb LINE L1 -5631 912 828 846 270 17 35 chr1 62016461 62016777 -220176887 - L1MDb LINE L1 -6200 340 50 1837 175 72 28 chr1 62016793 62017222 -220176442 - L1MB5 LINE L1 -6 6168 5721 1472 123 0 0 chr1 62017242 62017474 -220176190 - L1MB5 LINE L1 -956 5190 4960 2115 136 10 3 chr1 62017474 62017604 -220176060 + AluSx SINE Alu 1 129 -183 2326 110 0 0 chr1 62017604 62017903 -220175761 + AluSq SINE Alu 1 299 -14 2115 136 10 3 chr1 62017903 62018074 -220175590 + AluSx SINE Alu 129 304 -8 1472 123 0 0 chr1 62018074 62018194 -220175470 - L1MB5 LINE L1 -1186 4960 4907 870 167 0 0 chr1 62018194 62018326 -220175338 - FLAM_C SINE Alu 0 133 2 1472 123 0 0 chr1 62018326 62018471 -220175193 - L1MB5 LINE L1 -1239 4907 4764 2254 94 3 3 chr1 62018480 62018821 -220174843 - AluSq SINE Alu 0 341 1 512 350 69 17 chr1 62018830 62019190 -220174474 - L2 LINE L2 -609 2705 2327 350 267 78 0 chr1 62019957 62020073 -220173591 - MER69A DNA AcHobo -52 125 1 399 285 129 26 chr1 62020266 62020459 -220173205 - MIR SINE MIR -3 259 47 191 200 31 46 chr1 62020431 62020496 -220173168 - L2 LINE L2 -1052 2262 2199 * 264 277 12 0 chr1 62020523 62020606 -220173058 + (TGAA)n Simple_repeat Simple_repeat 2 85 0 304 311 6 0 chr1 62020627 62020808 -220172856 + CT-rich Low_complexity Low_complexity 1 182 0 2094 148 0 3 chr1 62020882 62021180 -220172484 - AluJo SINE Alu -15 297 1 490 324 107 46 chr1 62021343 62021851 -220171813 - L2 LINE L2 -13 3259 2721 270 0 0 0 chr1 62021943 62021973 -220171691 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 279 0 0 0 chr1 62021972 62022003 -220171661 + (TG)n Simple_repeat Simple_repeat 2 32 0 299 321 0 0 chr1 62022576 62022660 -220171004 - L2 LINE L2 -31 3241 3158 275 244 78 102 chr1 62022793 62023076 -220170588 - L2 LINE L2 -405 2909 2634 288 293 12 0 chr1 62024468 62024550 -220169114 + MIR SINE MIR 66 148 -114 2445 86 0 3 chr1 62024551 62024852 -220168812 + AluSq SINE Alu 1 300 -13 2247 120 0 0 chr1 62025178 62025477 -220168187 - AluSx SINE Alu -13 299 1 1697 155 0 44 chr1 62025528 62025845 -220167819 - AluJo SINE Alu 0 304 1 2192 131 0 0 chr1 62026056 62026346 -220167318 - AluSx SINE Alu -14 298 9 2196 112 7 0 chr1 62026390 62026686 -220166978 + AluSx SINE Alu 1 298 -14 2136 117 40 0 chr1 62026698 62026996 -220166668 + AluSx SINE Alu 1 310 -2 960 105 20 203 chr1 62027019 62027063 -220166601 - L1MB3 LINE L1 -1 6170 6120 764 204 8 0 chr1 62027063 62027195 -220166469 + FLAM_C SINE Alu 1 133 0 960 105 20 203 chr1 62027195 62027206 -220166458 - L1MB3 LINE L1 -51 6120 6109 1995 149 3 10 chr1 62027206 62027507 -220166157 - AluJb SINE Alu -13 299 1 960 105 20 203 chr1 62027507 62027527 -220166137 - L1MB3 LINE L1 -62 6109 6087 1705 193 10 10 chr1 62027527 62027833 -220165831 - AluJo SINE Alu -6 306 1 960 105 20 203 chr1 62027833 62027844 -220165820 - L1MB3 LINE L1 -84 6087 6076 1824 139 77 0 chr1 62027844 62028118 -220165546 - AluSx SINE Alu -17 295 1 960 105 20 203 chr1 62028118 62028334 -220165330 - L1MB3 LINE L1 -95 6076 5921 1484 182 24 1 chr1 62028334 62028654 -220165010 - L1 LINE L1 -1190 4956 4625 2584 199 31 118 chr1 62028735 62028882 -220164782 - L1ME3 LINE L1 -29 6133 5975 744 176 16 172 chr1 62028882 62029138 -220164526 - MER20 DNA MER1_type -3 216 1 2584 199 31 118 chr1 62029138 62029235 -220164429 - L1ME3 LINE L1 -187 5975 5871 183 42 0 0 chr1 62029235 62029259 -220164405 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1365 140 3 160 chr1 62029261 62029604 -220164060 - AluJb SINE Alu -12 290 2 2389 92 7 0 chr1 62029607 62029910 -220163754 - AluSp SINE Alu -8 305 1 2584 199 31 118 chr1 62029910 62030242 -220163422 - L1ME3 LINE L1 -294 5868 5509 1492 186 89 49 chr1 62030242 62030591 -220163073 - MLT1A1 LTR MaLR -2 363 1 2584 199 31 118 chr1 62030591 62030689 -220162975 - L1ME3 LINE L1 -653 5509 5404 2480 90 0 3 chr1 62030689 62031000 -220162664 + AluSp SINE Alu 1 310 -3 2584 199 31 118 chr1 62031000 62031338 -220162326 - L1ME3 LINE L1 -758 5404 5203 33 0 0 0 chr1 62031346 62031379 -220162285 + AT_rich Low_complexity Low_complexity 1 33 0 1955 152 3 10 chr1 62031380 62031669 -220161995 - AluSx SINE Alu -25 287 1 204 226 24 119 chr1 62031670 62031731 -220161933 + L2 LINE L2 3232 3286 -27 2214 113 0 0 chr1 62031731 62032065 -220161599 - AluSq SINE Alu 0 334 1 204 226 24 119 chr1 62032065 62032086 -220161578 + L2 LINE L2 3286 3307 -6 1915 162 0 10 chr1 62032105 62032408 -220161256 + AluJb SINE Alu 1 300 -12 2199 127 0 3 chr1 62032423 62032722 -220160942 + AluSx SINE Alu 1 298 -14 2396 216 84 3 chr1 62032735 62033356 -220160308 - L1MC4 LINE L1 -134 7908 7238 216 0 0 0 chr1 62033356 62033380 -220160284 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 501 238 0 0 chr1 62033384 62033506 -220160158 - L1MC4 LINE L1 -978 7064 6943 2145 128 0 3 chr1 62033545 62033843 -220159821 - AluSx SINE Alu -15 297 1 183 42 0 0 chr1 62033855 62033879 -220159785 + (A)n Simple_repeat Simple_repeat 1 24 0 733 212 141 5 chr1 62033879 62034077 -220159587 - L1MC4 LINE L1 -1086 6956 6732 623 275 78 41 chr1 62034550 62034900 -220158764 - L2 LINE L2 -252 3061 2693 2181 117 10 19 chr1 62034900 62035209 -220158455 + AluSq SINE Alu 1 306 -7 623 275 78 41 chr1 62035209 62035270 -220158394 - L2 LINE L2 -620 2693 2636 783 217 31 58 chr1 62035500 62035726 -220157938 + L2 LINE L2 3094 3313 0 505 267 30 0 chr1 62036123 62036254 -220157410 + L2 LINE L2 2836 2970 -343 2169 140 219 58 chr1 62036353 62036596 -220157068 - LTR29 LTR ERV1 -2 620 417 1860 161 0 40 chr1 62036596 62036920 -220156744 - AluJb SINE Alu 0 312 2 2169 140 219 58 chr1 62036920 62037210 -220156454 - LTR29 LTR ERV1 -205 417 1 450 155 14 0 chr1 62037213 62037284 -220156380 - L2 LINE L2 -6 3307 3236 353 325 50 0 chr1 62037320 62037440 -220156224 + L2 LINE L2 2966 3091 -222 326 164 0 0 chr1 62037448 62037503 -220156161 - MLT1H LTR MaLR -1 594 540 1376 143 3 122 chr1 62037523 62037633 -220156031 + AluJo SINE Alu 11 132 -180 2267 114 0 3 chr1 62037633 62037930 -220155734 - AluSq SINE Alu -17 296 1 1376 143 3 122 chr1 62037930 62038105 -220155559 + AluJo SINE Alu 132 262 -50 348 185 136 0 chr1 62038133 62038214 -220155450 - MLT1H LTR MaLR -72 483 392 513 292 59 6 chr1 62038285 62038502 -220155162 - MLT1H LTR MaLR -279 270 1 256 272 99 86 chr1 62039214 62039376 -220154288 + MIR SINE MIR 20 183 -79 222 240 20 0 chr1 62039626 62039676 -220153988 - L2 LINE L2 0 3272 3222 999 174 12 0 chr1 62039710 62039877 -220153787 - AluJo SINE Alu -22 290 122 2098 147 0 13 chr1 62039893 62040199 -220153465 + AluSx SINE Alu 1 302 -10 1402 151 0 5 chr1 62040361 62040566 -220153098 + AluJo SINE Alu 1 204 -108 282 318 0 16 chr1 62040761 62040887 -220152777 + C-rich Low_complexity Low_complexity 3 126 0 2295 73 0 42 chr1 62041280 62041593 -220152071 + AluY SINE Alu 1 300 -11 269 341 53 35 chr1 62041603 62041887 -220151777 + L3 LINE CR1 1077 1365 -212 213 200 261 0 chr1 62042881 62042946 -220150718 + MIR SINE MIR 72 153 -109 476 268 48 12 chr1 62043027 62043184 -220150480 - MIR3 SINE MIR -65 143 15 241 228 0 18 chr1 62043358 62043415 -220150249 + G-rich Low_complexity Low_complexity 3 58 0 557 265 14 20 chr1 62044641 62044788 -220148876 + L2 LINE L2 3127 3272 0 282 296 36 107 chr1 62044997 62045161 -220148503 + MIR SINE MIR 7 148 -114 2117 141 7 0 chr1 62045161 62045451 -220148213 - AluSx SINE Alu -20 292 1 282 296 36 107 chr1 62045451 62045539 -220148125 + MIR SINE MIR 148 241 -21 1425 153 21 117 chr1 62045777 62046110 -220147554 - AluYb8 SINE Alu -17 301 1 192 77 0 0 chr1 62046124 62046150 -220147514 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 877 114 138 6 chr1 62046177 62046344 -220147320 + MER53 DNA DNA 1 189 0 1800 116 7 46 chr1 62046416 62046576 -220147088 - AluJb SINE Alu -16 296 131 1939 130 55 3 chr1 62046576 62046869 -220146795 - AluSx SINE Alu -4 308 1 1800 116 7 46 chr1 62046869 62046881 -220146783 - AluJb SINE Alu -181 131 120 2269 113 17 0 chr1 62046881 62047181 -220146483 - AluSg SINE Alu -5 305 1 1800 116 7 46 chr1 62047181 62047291 -220146373 - AluJb SINE Alu -192 120 24 2135 114 0 0 chr1 62047291 62047624 -220146040 + AluSx SINE Alu 1 333 0 187 330 22 44 chr1 62047693 62047784 -220145880 - MIR SINE MIR -154 108 20 500 251 22 60 chr1 62047958 62048141 -220145523 - L2 LINE L2 -32 3281 3106 2289 229 59 23 chr1 62048157 62048866 -220144798 + L1ME3A LINE L1 5413 6147 -23 381 287 47 23 chr1 62050428 62050557 -220143107 - MIR SINE MIR -56 152 21 187 297 14 14 chr1 62050572 62050646 -220143018 + MIR SINE MIR 42 115 -93 559 223 122 0 chr1 62051268 62051407 -220142257 - MER96 DNA MER1_type? -19 156 1 719 241 49 0 chr1 62052009 62052171 -220141493 + MIR SINE MIR 22 191 -71 262 369 0 0 chr1 62052189 62052273 -220141391 + L2 LINE L2 3189 3272 0 2295 105 0 19 chr1 62052323 62052638 -220141026 - AluSq SINE Alu 0 313 5 268 255 49 34 chr1 62053036 62053148 -220140516 + MIR SINE MIR 36 105 -103 776 145 8 0 chr1 62053230 62053347 -220140317 + FLAM_C SINE Alu 1 118 -15 413 242 75 8 chr1 62053368 62053488 -220140176 + MIR SINE MIR 74 201 -61 808 283 130 36 chr1 62053616 62054253 -220139411 + L2 LINE L2 2569 3261 -11 346 214 0 60 chr1 62054258 62054342 -220139322 - L2 LINE L2 0 3313 3235 380 292 39 19 chr1 62054380 62054534 -220139130 - MIR SINE MIR -95 167 11 332 236 0 28 chr1 62054729 62054801 -220138863 - L3 LINE CR1 -920 657 588 420 254 95 24 chr1 62054843 62054969 -220138695 + MIR3 SINE MIR 11 145 -63 2181 117 0 28 chr1 62055178 62055495 -220138169 - AluSx SINE Alu -4 308 1 203 268 72 0 chr1 62055796 62055893 -220137771 - MIR3 SINE MIR -97 111 8 526 209 31 44 chr1 62055986 62056144 -220137520 + MIR3 SINE MIR 9 165 -63 248 235 163 20 chr1 62056776 62056874 -220136790 - L2 LINE L2 -4 3268 3157 741 235 62 123 chr1 62057093 62057220 -220136444 - L1MC4a LINE L1 -1845 5963 5830 2254 95 0 3 chr1 62057220 62057549 -220136115 - AluSx SINE Alu 0 328 1 741 235 62 123 chr1 62057549 62058029 -220135635 - L1MC4a LINE L1 -1978 5830 5392 265 260 51 57 chr1 62057878 62058041 -220135623 - L1PA8A LINE L1 -582 5549 5386 * 1434 155 126 11 chr1 62058041 62058171 -220135493 - AluJb SINE Alu 0 302 188 1873 106 0 0 chr1 62058171 62058407 -220135257 + AluSx SINE Alu 60 295 -17 1434 155 126 11 chr1 62058407 62058547 -220135117 - AluJb SINE Alu -114 188 1 265 260 51 57 chr1 62058547 62058560 -220135104 - L1PA8A LINE L1 -745 5386 5374 355 329 52 19 chr1 62058690 62058845 -220134819 + MIR SINE MIR 33 192 -70 1112 233 95 26 chr1 62059215 62059619 -220134045 + MLT1C LTR MaLR 1 441 -26 1706 158 54 4 chr1 62059902 62060181 -220133483 + AluJo SINE Alu 1 293 -19 2550 59 7 0 chr1 62060613 62060916 -220132748 - AluY SINE Alu -5 306 2 2126 93 46 0 chr1 62061698 62061978 -220131686 + AluSx SINE Alu 1 293 -19 306 0 0 0 chr1 62061978 62062012 -220131652 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr1 62062032 62062052 -220131612 + (TC)n Simple_repeat Simple_repeat 1 20 0 210 188 42 21 chr1 62062195 62062243 -220131421 - MER5B DNA MER1_type -128 50 2 673 259 43 5 chr1 62063030 62063215 -220130449 + MIR SINE MIR 4 195 -67 587 176 0 0 chr1 62063225 62063316 -220130348 + AluS SINE Alu 2 92 -220 1238 110 6 0 chr1 62063436 62063599 -220130065 + AluSc SINE Alu 93 256 -53 233 305 0 0 chr1 62063603 62063662 -220130002 + MIR SINE MIR 204 262 0 210 319 74 43 chr1 62063621 62063784 -220129880 - MIR SINE MIR -36 226 59 * 799 202 33 95 chr1 62063957 62064053 -220129611 - MIR SINE MIR -11 251 151 2284 99 0 0 chr1 62064053 62064345 -220129319 - AluSx SINE Alu -9 303 12 799 202 33 95 chr1 62064345 62064491 -220129173 - MIR SINE MIR -111 151 24 525 259 101 53 chr1 62064520 62064536 -220129128 + MIR SINE MIR 1 15 -247 752 216 10 36 chr1 62064536 62064650 -220129014 - MER5A DNA MER1_type 0 189 81 2051 122 24 11 chr1 62064650 62064937 -220128727 - AluSx SINE Alu -21 291 1 752 216 10 36 chr1 62064937 62065016 -220128648 - MER5A DNA MER1_type -108 81 1 525 259 101 53 chr1 62065016 62065227 -220128437 + MIR SINE MIR 15 239 -23 575 290 0 0 chr1 62065284 62065415 -220128249 + MIR3 SINE MIR 51 181 -27 277 273 87 115 chr1 62065893 62066146 -220127518 - L2 LINE L2 -13 3259 3014 901 241 36 18 chr1 62066226 62066473 -220127191 - MIR SINE MIR 0 262 13 2399 148 14 32 chr1 62066482 62066834 -220126830 - L1MB3 LINE L1 -7 6176 5832 2420 112 0 0 chr1 62066834 62067146 -220126518 - AluSx SINE Alu 0 312 1 2399 148 14 32 chr1 62067146 62067232 -220126432 - L1MB3 LINE L1 -351 5832 5746 343 244 96 89 chr1 62067329 62067464 -220126200 - L2 LINE L2 -182 3090 2955 237 157 0 114 chr1 62067638 62067708 -220125956 + MIR SINE MIR 18 79 -129 341 256 136 31 chr1 62067746 62067964 -220125700 - MIR SINE MIR -6 256 8 702 178 123 0 chr1 62068356 62068502 -220125162 + MIR SINE MIR 79 242 -20 2166 132 3 0 chr1 62068964 62069268 -220124396 - AluSq SINE Alu -8 305 1 1014 74 28 17 chr1 62069269 62069445 -220124219 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1934 146 23 10 chr1 62069465 62069773 -220123891 - AluSx SINE Alu 0 312 1 213 274 41 14 chr1 62070334 62070407 -220123257 - L2 LINE L2 -992 2322 2248 208 139 28 0 chr1 62070893 62070929 -220122735 - MIR SINE MIR -114 148 112 1731 145 46 11 chr1 62071763 62072045 -220121619 - AluJb SINE Alu -20 292 1 219 254 0 17 chr1 62072081 62072140 -220121524 + MER91 DNA MER1_type 130 187 -3 34 24 0 0 chr1 62072644 62072685 -220120979 + AT_rich Low_complexity Low_complexity 1 41 0 391 344 134 24 chr1 62072975 62073519 -220120145 + L2 LINE L2 2157 2760 -554 566 191 53 33 chr1 62073602 62073754 -220119910 - MER103 DNA DNA -11 155 1 455 268 35 1 chr1 62073940 62074181 -220119483 - LTR16A LTR ERVL -61 389 113 405 216 147 94 chr1 62074414 62074604 -220119060 - MER102b DNA MER1_type -1090 338 160 2158 108 0 38 chr1 62074604 62074920 -220118744 - AluSx SINE Alu -8 304 1 405 216 147 94 chr1 62074920 62074968 -220118696 - MER102b DNA MER1_type -1268 160 116 2410 95 7 0 chr1 62074968 62075272 -220118392 - AluSp SINE Alu -7 306 1 405 216 147 94 chr1 62075272 62075352 -220118312 - MER102b DNA MER1_type -1312 116 2 192 77 0 0 chr1 62075464 62075490 -220118174 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 490 304 83 72 chr1 62075493 62075937 -220117727 - L2 LINE L2 -17 3255 2807 278 307 208 0 chr1 62076872 62076973 -220116691 - MER91A DNA MER1_type -74 122 1 364 319 166 0 chr1 62077082 62077245 -220116419 + MIR SINE MIR 56 245 -17 216 0 49 49 chr1 62077299 62077340 -220116324 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 295 305 42 25 chr1 62078193 62078311 -220115353 - L2 LINE L2 -182 3090 2971 1603 188 0 29 chr1 62078312 62078584 -220115080 + AluJo SINE Alu 2 265 -47 234 0 0 0 chr1 62078592 62078618 -220115046 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 225 189 0 0 chr1 62078875 62078912 -220114752 - MIR SINE MIR -58 150 114 2108 110 7 0 chr1 62079384 62079692 -220113972 - AluSx SINE Alu 0 310 1 331 305 36 36 chr1 62079887 62080054 -220113610 - L2 LINE L2 -190 3082 2916 360 224 20 0 chr1 62080543 62080630 -220113034 - MIR SINE MIR -61 147 76 302 296 43 99 chr1 62080820 62080935 -220112729 - L2 LINE L2 -8 3264 3169 1038 198 14 23 chr1 62080935 62081152 -220112512 + MER20 DNA MER1_type 1 215 -4 302 296 43 99 chr1 62081152 62081289 -220112375 - L2 LINE L2 -103 3169 3026 275 272 23 87 chr1 62081539 62081756 -220111908 + L1ME LINE L1 5508 5717 -453 2395 94 7 0 chr1 62081906 62082214 -220111450 + AluSq SINE Alu 1 310 -3 940 127 0 8 chr1 62082284 62082418 -220111246 + FLAM_C SINE Alu 1 133 0 311 325 62 5 chr1 62082681 62082890 -220110774 - L2 LINE L2 -807 2507 2287 1731 153 68 9 chr1 62082895 62083234 -220110430 + MLT1A1 LTR MaLR 2 360 -5 319 267 66 40 chr1 62083665 62083831 -220109833 - MIR3 SINE MIR -61 147 4 283 227 165 31 chr1 62083979 62084076 -220109588 + MIR SINE MIR 83 192 -70 2360 79 0 3 chr1 62084610 62084902 -220108762 - AluSg SINE Alu -19 291 1 663 238 163 27 chr1 62085321 62085808 -220107856 + L2 LINE L2 2703 3270 -2 388 268 242 5 chr1 62086363 62086557 -220107107 + MIR SINE MIR 17 256 -6 266 256 39 0 chr1 62086567 62086645 -220107019 - MIR3 SINE MIR -11 197 117 259 219 209 19 chr1 62087004 62087109 -220106555 - L2 LINE L2 -2 3270 3146 191 337 61 0 chr1 62087235 62087333 -220106331 - L2 LINE L2 -244 3028 2925 1734 147 83 0 chr1 62088273 62088539 -220105125 + AluJo SINE Alu 1 288 -24 903 116 16 0 chr1 62088598 62088719 -220104945 - AluJb SINE Alu -187 125 3 649 99 0 40 chr1 62088969 62089070 -220104594 - FLAM_C SINE Alu -15 128 32 391 162 117 18 chr1 62089071 62089182 -220104482 - HAL1 LINE L1 -1152 1355 1234 * 1370 220 232 25 chr1 62089179 62089697 -220103967 - HAL1 LINE L1 -1882 625 1 270 298 72 32 chr1 62089717 62089996 -220103668 - L1ME4a LINE L1 -187 5934 5645 1753 166 10 24 chr1 62090071 62090366 -220103298 - AluJo SINE Alu -11 301 11 522 133 167 8 chr1 62090374 62090494 -220103170 + MER58C DNA MER1_type 77 215 0 21 36 0 0 chr1 62090660 62090688 -220102976 + AT_rich Low_complexity Low_complexity 1 28 0 618 262 114 6 chr1 62090754 62091166 -220102498 - L1MC4a LINE L1 -733 5431 5338 270 294 28 28 chr1 62091165 62091274 -220102390 - L1ME4a LINE L1 -508 5613 5505 * 34 0 0 0 chr1 62091617 62091651 -220102013 + AT_rich Low_complexity Low_complexity 1 34 0 355 260 73 16 chr1 62092132 62092255 -220101409 + MIR3 SINE MIR 75 204 -4 335 328 52 8 chr1 62092445 62092579 -220101085 - MIR SINE MIR -86 176 37 1844 161 31 9 chr1 62093183 62093505 -220100159 + MER7A DNA MER2_type 1 327 -19 194 351 39 0 chr1 62093647 62093716 -220099948 + MIR SINE MIR 19 93 -115 700 276 43 23 chr1 62093716 62093973 -220099691 + MIR SINE MIR 1 262 0 823 194 49 45 chr1 62094368 62094435 -220099229 + L1M4 LINE L1 2329 2394 -3752 2043 135 10 32 chr1 62094435 62094747 -220098917 - AluJb SINE Alu -7 305 1 823 194 49 45 chr1 62094747 62094926 -220098738 + L1M4 LINE L1 2394 2576 -3570 3541 204 30 52 chr1 62094948 62095789 -220097875 + L1M4 LINE L1 1 822 -5720 2674 222 44 16 chr1 62095804 62096555 -220097109 + L1M4 LINE L1 1146 1917 -4729 1456 199 55 20 chr1 62096551 62096954 -220096710 + L1M4 LINE L1 4673 5089 -1555 * 982 215 0 0 chr1 62096954 62097117 -220096547 - FRAM SINE Alu -19 157 1 2857 189 54 55 chr1 62097117 62097744 -220095920 + L1M4 LINE L1 5082 5701 -971 915 150 0 0 chr1 62097744 62097877 -220095787 + FLAM_C SINE Alu 1 133 0 2857 189 54 55 chr1 62097877 62098157 -220095507 + L1M4 LINE L1 5701 5980 -692 193 277 135 95 chr1 62098240 62098388 -220095276 + L2 LINE L2 3115 3268 -4 4012 152 65 13 chr1 62098824 62099521 -220094143 - MER44D DNA MER2_type 0 605 1 242 307 158 0 chr1 62099548 62099662 -220094002 - MIR SINE MIR -71 191 60 2235 116 10 0 chr1 62099902 62100195 -220093469 - AluSx SINE Alu -16 296 1 700 208 19 26 chr1 62100601 62100755 -220092909 + MER58B DNA MER1_type 187 339 -2 228 338 130 72 chr1 62100978 62101309 -220092355 + L2 LINE L2 2916 3265 -7 306 117 0 0 chr1 62101495 62101548 -220092116 + AluJb SINE Alu 86 131 -171 231 244 47 35 chr1 62102120 62102206 -220091458 - MER113 DNA MER1_type? -2 519 433 2219 96 41 3 chr1 62102225 62102517 -220091147 + AluSx SINE Alu 1 303 -9 1929 166 0 7 chr1 62102623 62102931 -220090733 - AluJo SINE Alu -2 310 5 1973 157 0 25 chr1 62102978 62103297 -220090367 + AluSx SINE Alu 1 311 -1 1808 157 7 14 chr1 62103309 62103626 -220090038 + AluJb SINE Alu 1 315 0 234 0 0 0 chr1 62103922 62103948 -220089716 + (T)n Simple_repeat Simple_repeat 1 26 0 1049 69 0 53 chr1 62103973 62104241 -220089423 - L1MB3 LINE L1 0 6183 5902 2394 98 0 10 chr1 62104241 62104546 -220089118 - AluSx SINE Alu -10 302 1 1977 151 6 10 chr1 62104553 62104864 -220088800 - AluSx SINE Alu -2 310 1 1049 69 0 53 chr1 62104864 62104905 -220088759 - L1MB3 LINE L1 -287 5896 5791 2791 197 214 70 chr1 62104953 62105395 -220088269 - L1MC4 LINE L1 -101 7707 7330 2148 130 0 7 chr1 62105395 62105695 -220087969 - AluSq SINE Alu -15 298 1 2791 197 214 70 chr1 62105695 62106325 -220087339 - L1MC4 LINE L1 -478 7330 6792 725 33 58 0 chr1 62106325 62106446 -220087218 + (GA)n Simple_repeat Simple_repeat 1 128 0 2791 197 214 70 chr1 62106446 62106531 -220087133 - L1MC4 LINE L1 -1016 6792 6721 2003 164 3 3 chr1 62106531 62106843 -220086821 - AluJb SINE Alu 0 312 1 2791 197 214 70 chr1 62106843 62106885 -220086779 - L1MC4 LINE L1 -1087 6721 6442 322 363 76 0 chr1 62107468 62107625 -220086039 + MIR SINE MIR 46 214 -48 2137 102 18 65 chr1 62107882 62108082 -220085582 - THE1B LTR MaLR 0 364 189 2475 82 0 0 chr1 62108082 62108374 -220085290 - AluSq SINE Alu -21 292 1 2137 102 18 65 chr1 62108374 62108555 -220085109 - THE1B LTR MaLR -175 189 1 2332 87 7 17 chr1 62108835 62109134 -220084530 - AluSx SINE Alu -16 296 1 933 134 0 40 chr1 62109196 62109345 -220084319 - FLAM_C SINE Alu 0 143 1 471 185 77 54 chr1 62109353 62109483 -220084181 - FLAM_A SINE Alu 0 133 1 246 289 66 0 chr1 62109536 62109612 -220084052 + MIR SINE MIR 71 151 -111 210 316 53 8 chr1 62109890 62110023 -220083641 - L2 LINE L2 -420 2894 2756 21 36 0 0 chr1 62110036 62110064 -220083600 + AT_rich Low_complexity Low_complexity 1 28 0 1534 167 65 15 chr1 62110077 62110340 -220083324 + AluJo SINE Alu 1 276 -36 208 318 97 109 chr1 62111055 62111322 -220082342 + L2 LINE L2 3008 3271 -1 320 282 190 31 chr1 62112592 62112787 -220080877 + MLT1I LTR MaLR 158 383 -26 2403 93 3 0 chr1 62112845 62113147 -220080517 + AluSq SINE Alu 1 303 -10 243 287 74 0 chr1 62113920 62114028 -220079636 + MIR3 SINE MIR 78 193 -15 468 0 0 0 chr1 62114402 62114454 -220079210 + (CA)n Simple_repeat Simple_repeat 1 52 0 268 247 39 13 chr1 62114532 62114609 -220079055 + MIR SINE MIR 88 166 -96 215 319 88 11 chr1 62114730 62114821 -220078843 - L2 LINE L2 -57 3215 3118 180 285 108 88 chr1 62115059 62115308 -220078356 - L2 LINE L2 -95 3177 2924 242 294 128 0 chr1 62115380 62115482 -220078182 + L2 LINE L2 3141 3255 -17 915 215 139 0 chr1 62116001 62116224 -220077440 + MIR SINE MIR 8 261 -1 2125 159 9 0 chr1 62116244 62116578 -220077086 + MER1B DNA MER1_type 1 337 0 31 0 0 0 chr1 62116760 62116791 -220076873 + AT_rich Low_complexity Low_complexity 1 31 0 702 157 9 0 chr1 62116791 62116906 -220076758 - FLAM_C SINE Alu -18 125 10 264 381 27 0 chr1 62116925 62117072 -220076592 + MIR3 SINE MIR 21 171 -37 357 249 87 7 chr1 62117187 62117322 -220076342 + MIR SINE MIR 19 159 -68 342 326 67 10 chr1 62117752 62117945 -220075719 + L2 LINE L2 2877 3080 -192 210 269 0 0 chr1 62118138 62118190 -220075474 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 354 272 218 0 chr1 62119040 62119187 -220074477 - MIR SINE MIR -39 223 45 864 297 8 15 chr1 62119587 62119850 -220073814 + MIR SINE MIR 2 262 0 214 268 146 97 chr1 62119839 62120209 -220073455 + L2 LINE L2 2879 3266 -6 * 780 292 15 0 chr1 62120375 62120577 -220073087 - MIR SINE MIR -12 250 46 415 217 155 39 chr1 62121140 62121269 -220072395 - MIR SINE MIR -93 169 26 1478 157 0 0 chr1 62121289 62121518 -220072146 - AluJb SINE Alu -9 303 75 390 355 89 0 chr1 62122335 62122530 -220071134 - MIR SINE MIR -49 213 3 213 307 80 0 chr1 62122588 62122663 -220071001 + MIR SINE MIR 86 166 -96 25 0 0 0 chr1 62123041 62123066 -220070598 + AT_rich Low_complexity Low_complexity 1 25 0 402 204 11 11 chr1 62123080 62123160 -220070504 + FLAM_A SINE Alu 34 116 -195 1476 127 131 0 chr1 62123160 62123420 -220070244 - AluJb SINE Alu -6 296 3 343 260 133 13 chr1 62123566 62123716 -220069948 + MIR SINE MIR 8 175 -87 1385 99 18 45 chr1 62123752 62123975 -220069689 + AluJo SINE Alu 1 217 -95 258 152 0 0 chr1 62123983 62124029 -220069635 + FLAM SINE Alu 88 133 0 203 190 0 35 chr1 62124527 62124585 -220069079 + (CGTG)n Simple_repeat Simple_repeat 4 59 0 25 0 0 0 chr1 62125528 62125553 -220068111 + AT_rich Low_complexity Low_complexity 1 25 0 444 190 70 0 chr1 62125722 62125822 -220067842 + MER5B DNA MER1_type 10 116 -62 184 135 108 0 chr1 62125816 62125853 -220067811 - MER5B DNA MER1_type -137 41 1 * 2423 86 3 0 chr1 62126010 62126314 -220067350 + AluSp SINE Alu 3 307 -6 382 293 143 7 chr1 62127300 62127447 -220066217 - MIR3 SINE MIR -35 173 7 241 242 202 40 chr1 62127556 62127655 -220066009 - MIR SINE MIR -63 145 31 227 157 0 59 chr1 62129106 62129157 -220064507 + L1M3e LINE L1 564 611 -6419 826 259 60 16 chr1 62129609 62129860 -220063804 + MIR SINE MIR 1 262 0 2316 128 7 0 chr1 62129906 62130212 -220063452 + AluSx SINE Alu 1 308 -4 782 312 77 36 chr1 62130392 62130967 -220062697 + L2 LINE L2 2293 2950 -322 2493 51 3 3 chr1 62130967 62131260 -220062404 - AluY SINE Alu -18 293 1 782 312 77 36 chr1 62131260 62131543 -220062121 + L2 LINE L2 2950 3220 -52 259 305 11 0 chr1 62131699 62131794 -220061870 - L1ME LINE L1 -452 5669 5574 1035 154 5 36 chr1 62132272 62132316 -220061348 - MER5A DNA MER1_type 0 189 145 2165 122 3 7 chr1 62132316 62132620 -220061044 - AluSx SINE Alu -7 305 3 1035 154 5 36 chr1 62132620 62132770 -220060894 - MER5A DNA MER1_type -44 145 1 385 283 10 10 chr1 62132807 62132906 -220060758 + L2 LINE L2 3199 3297 -16 789 132 0 44 chr1 62132908 62133044 -220060620 - FLAM_C SINE Alu -1 132 3 191 174 22 22 chr1 62133434 62133480 -220060184 - L2 LINE L2 -6 3307 3262 198 246 16 33 chr1 62134017 62134078 -220059586 + MIR SINE MIR 203 262 0 * 304 362 6 37 chr1 62134062 62134225 -220059439 - MIR SINE MIR -102 160 3 320 283 42 54 chr1 62134243 62134409 -220059255 + MIR3 SINE MIR 45 208 0 506 265 7 14 chr1 62135183 62135330 -220058334 - L2 LINE L2 -5 3308 3163 393 114 48 38 chr1 62135360 62135465 -220058199 - MER96B DNA MER1_type? -64 353 248 522 237 81 81 chr1 62135473 62135546 -220058118 - L2 LINE L2 -166 3147 3075 2288 99 10 10 chr1 62135546 62135848 -220057816 - AluSq SINE Alu -11 302 1 522 237 81 81 chr1 62135848 62136010 -220057654 - L2 LINE L2 -237 3076 2912 300 237 63 68 chr1 62136188 62136378 -220057286 - L2 LINE L2 -209 3063 2875 258 208 292 8 chr1 62136431 62136561 -220057103 + MER5B DNA MER1_type 1 167 -11 194 276 17 0 chr1 62137086 62137144 -220056520 - MIR SINE MIR -46 216 158 192 363 49 0 chr1 62137574 62137676 -220055988 + L2 LINE L2 3182 3288 -25 226 254 211 9 chr1 62137740 62137854 -220055810 + L2 LINE L2 3136 3272 0 259 330 37 18 chr1 62138036 62138145 -220055519 - L2 LINE L2 -212 3060 2950 289 309 147 15 chr1 62138786 62138922 -220054742 + MIR SINE MIR 29 182 -80 550 277 2 90 chr1 62139283 62139354 -220054310 - MIR SINE MIR -1 261 185 1810 128 10 41 chr1 62139354 62139671 -220053993 - AluSx SINE Alu 0 308 1 550 277 2 90 chr1 62139671 62139869 -220053795 - MIR SINE MIR -77 185 14 760 301 34 0 chr1 62140152 62140361 -220053303 + MIR SINE MIR 47 262 0 225 278 0 0 chr1 62140445 62140499 -220053165 + L2 LINE L2 3137 3190 -82 2391 109 0 3 chr1 62140653 62140966 -220052698 - AluSx SINE Alu 0 312 1 344 279 107 8 chr1 62141257 62141423 -220052241 + MIR SINE MIR 9 187 -55 743 208 19 128 chr1 62141633 62141999 -220051665 + L2 LINE L2 2934 3259 -54 693 163 28 124 chr1 62142002 62142069 -220051595 - MER58B DNA MER1_type -2081 339 267 2648 58 3 0 chr1 62142069 62142379 -220051285 - AluY SINE Alu 0 311 1 693 163 28 124 chr1 62142379 62142489 -220051175 - MER58B DNA MER1_type -2153 267 179 1145 141 5 22 chr1 62142494 62142678 -220050986 + FRAM SINE Alu 1 176 0 302 234 0 16 chr1 62142686 62142750 -220050914 - MER58B DNA MER1_type -278 63 1 301 71 0 0 chr1 62142789 62142831 -220050833 - MADE1 DNA Mariner -37 43 2 196 139 0 0 chr1 62142831 62142867 -220050797 + L2 LINE L2 3278 3313 0 192 277 15 46 chr1 62142881 62142946 -220050718 + L2 LINE L2 3198 3260 -12 1619 144 42 159 chr1 62143086 62143432 -220050232 - MLT2D LTR ERVL -10 404 19 1780 91 0 9 chr1 62143432 62143664 -220050000 + AluSg/x SINE Alu 81 310 0 1619 144 42 159 chr1 62143664 62143735 -220049929 - MLT2D LTR ERVL -395 19 -59 1230 148 9 189 chr1 62143735 62143805 -220049859 - MLT1A1 LTR MaLR 0 365 284 2296 107 0 7 chr1 62143805 62144114 -220049550 - AluSx SINE Alu -5 307 1 1230 148 9 189 chr1 62144114 62144329 -220049335 - MLT1A1 LTR MaLR -81 284 185 2035 106 25 0 chr1 62144329 62144630 -220049034 - AluSx SINE Alu 0 308 1 1230 148 9 189 chr1 62144630 62144787 -220048877 - MLT1A1 LTR MaLR -180 185 1 1619 144 42 159 chr1 62144787 62144826 -220048838 - MLT2D LTR ERVL -472 4294967238 1 1218 230 40 37 chr1 62144840 62145166 -220048498 - LTR16C LTR ERVL -14 477 151 242 70 16 14 chr1 62145458 62145495 -220048169 - MLT1K LTR MaLR -339 249 16 393 182 11 57 chr1 62145908 62145996 -220047668 + MIR SINE MIR 67 150 -112 2180 81 0 0 chr1 62145998 62146281 -220047383 + AluSg SINE Alu 26 308 0 184 250 0 0 chr1 62146876 62146916 -220046748 - MIR SINE MIR -95 113 74 * 525 287 80 63 chr1 62146911 62147197 -220046467 + L3 LINE CR1 1286 1576 -1 534 271 8 0 chr1 62147737 62147859 -220045805 + L2 LINE L2 3150 3272 0 2463 115 56 7 chr1 62147945 62148353 -220045311 + MSTA LTR MaLR 1 428 0 224 241 69 0 chr1 62148367 62148425 -220045239 + MIR SINE MIR 92 153 -55 234 335 79 63 chr1 62148582 62148836 -220044828 - L2 LINE L2 0 3272 3015 416 246 172 0 chr1 62149036 62149170 -220044494 + MIR SINE MIR 36 192 -70 457 193 0 0 chr1 62149976 62150064 -220043600 + MIR3 SINE MIR 84 171 -37 1019 112 0 0 chr1 62150174 62150308 -220043356 + AluSg/x SINE Alu 156 289 -23 2330 107 3 0 chr1 62150389 62150689 -220042975 + AluSp SINE Alu 1 301 -12 314 305 67 9 chr1 62152124 62152229 -220041435 + MIR SINE MIR 42 152 -56 353 321 36 0 chr1 62152288 62152400 -220041264 - MIR SINE MIR 0 262 147 297 328 156 8 chr1 62152776 62152904 -220040760 + MIR3 SINE MIR 16 162 -46 682 279 107 4 chr1 62152911 62153144 -220040520 - L2 LINE L2 -2 3311 3055 188 323 87 79 chr1 62153442 62153671 -220039993 + MIR SINE MIR 29 259 -3 * 998 263 54 18 chr1 62153660 62153891 -220039773 - L2 LINE L2 0 3313 3092 1845 153 0 48 chr1 62153891 62154205 -220039459 + AluJo SINE Alu 1 299 -13 998 263 54 18 chr1 62154205 62154443 -220039221 - L2 LINE L2 -221 3092 2769 278 283 50 17 chr1 62154618 62154738 -220038926 + MIR SINE MIR 89 212 -50 292 286 111 8 chr1 62155015 62155141 -220038523 + L3 LINE CR1 1297 1435 -142 447 269 193 20 chr1 62155196 62155393 -220038271 - MIR SINE MIR -25 237 7 388 303 128 10 chr1 62155418 62155613 -220038051 - MIR SINE MIR -21 241 24 263 242 30 0 chr1 62155616 62155682 -220037982 + L3 LINE CR1 1456 1523 -54 2038 145 3 3 chr1 62155712 62156009 -220037655 + AluJb SINE Alu 1 297 -15 187 139 70 23 chr1 62156755 62156798 -220036866 - MIR SINE MIR -102 106 62 343 223 0 0 chr1 62158388 62158476 -220035188 + MIR SINE MIR 28 116 -92 200 336 71 26 chr1 62159026 62159139 -220034525 - L2 LINE L2 -18 3254 3137 604 246 34 28 chr1 62159194 62159373 -220034291 - MIR SINE MIR -69 193 14 335 349 128 11 chr1 62159789 62160147 -220033517 - L2 LINE L2 -3 3269 2870 1449 224 0 17 chr1 62160275 62160574 -220033090 + AluJo SINE Alu 1 294 -18 243 0 0 0 chr1 62160944 62160971 -220032693 + (CTG)n Simple_repeat Simple_repeat 2 28 0 2194 130 10 0 chr1 62160974 62161339 -220032325 - AluSx SINE Alu 0 368 1 339 296 76 15 chr1 62162074 62162206 -220031458 - MIR3 SINE MIR -46 162 23 2305 82 14 0 chr1 62162621 62162912 -220030752 - AluSp SINE Alu -18 295 1 246 218 22 68 chr1 62163515 62163606 -220030058 - MIR SINE MIR -62 146 92 323 230 44 89 chr1 62163701 62163836 -220029828 - MIR SINE MIR -50 212 84 807 258 77 9 chr1 62163877 62164110 -220029554 - MIR SINE MIR 0 262 14 853 149 137 18 chr1 62164118 62164286 -220029378 + MER5A DNA MER1_type 2 189 0 309 274 88 38 chr1 62164869 62165042 -220028622 - MIR SINE MIR -37 171 5 208 200 107 27 chr1 62165868 62165943 -220027721 + MIR3 SINE MIR 125 205 -3 504 226 119 18 chr1 62166109 62166277 -220027387 + MIR SINE MIR 47 231 -31 204 200 0 0 chr1 62166341 62166386 -220027278 + (TG)n Simple_repeat Simple_repeat 1 45 0 181 354 27 48 chr1 62166586 62166733 -220026931 + MIR SINE MIR 90 233 -29 22 0 0 0 chr1 62166921 62166943 -220026721 + AT_rich Low_complexity Low_complexity 1 22 0 527 251 137 0 chr1 62167217 62167392 -220026272 - MIR SINE MIR -52 210 12 1846 91 62 0 chr1 62167561 62167803 -220025861 + AluSq SINE Alu 1 257 -56 207 0 0 0 chr1 62167810 62167833 -220025831 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 25 65 0 0 chr1 62167929 62167975 -220025689 + AT_rich Low_complexity Low_complexity 1 46 0 264 240 120 30 chr1 62168308 62168408 -220025256 + MIR SINE MIR 18 126 -82 263 125 0 0 chr1 62168880 62168920 -220024744 + MIR SINE MIR 213 252 -10 220 257 28 73 chr1 62169029 62169138 -220024526 - MIR SINE MIR -68 140 37 424 237 90 45 chr1 62169577 62169733 -220023931 - MIR3 SINE MIR -23 185 23 280 195 172 0 chr1 62169972 62170059 -220023605 - MIR SINE MIR -32 230 129 379 331 54 12 chr1 62170061 62170227 -220023437 - MIR SINE MIR -89 173 1 263 284 52 35 chr1 62171669 62171785 -220021879 - MIR SINE MIR -72 136 19 185 237 0 0 chr1 62172076 62172114 -220021550 + MIR SINE MIR 116 153 -109 349 299 92 65 chr1 62172423 62172640 -220021024 + L1ME LINE L1 5258 5480 -641 24 32 0 0 chr1 62172640 62172671 -220020993 + AT_rich Low_complexity Low_complexity 1 31 0 2475 67 3 7 chr1 62172774 62173071 -220020593 + AluSp SINE Alu 1 296 -17 3956 148 11 50 chr1 62173071 62173823 -220019841 - L1MB3 LINE L1 -9 6174 5453 291 237 26 0 chr1 62174203 62174279 -220019385 + MIR SINE MIR 84 161 -101 333 279 66 0 chr1 62174603 62174725 -220018939 - MIR SINE MIR -80 182 53 278 245 0 0 chr1 62174788 62174841 -220018823 - L2 LINE L2 -6 3307 3255 485 229 119 55 chr1 62174901 62175102 -220018562 - MIR SINE MIR -3 259 46 209 183 0 117 chr1 62175616 62175676 -220017988 + L2 LINE L2 3031 3083 -189 200 284 34 57 chr1 62176668 62176756 -220016908 - MIR SINE MIR -142 120 35 562 242 37 53 chr1 62176793 62176983 -220016681 - L2 LINE L2 -29 3284 3098 198 0 0 0 chr1 62176989 62177011 -220016653 + (GGGTG)n Simple_repeat Simple_repeat 4 25 0 1068 266 92 14 chr1 62178300 62178851 -220014813 - L2 LINE L2 -23 3290 2695 610 258 145 30 chr1 62179038 62179403 -220014261 + L2 LINE L2 2866 3272 0 316 302 9 9 chr1 62179458 62179574 -220014090 - MIR SINE MIR -127 135 20 678 223 24 30 chr1 62179762 62179928 -220013736 - MIR SINE MIR -51 211 47 197 220 20 0 chr1 62180490 62180540 -220013124 + L2 LINE L2 3206 3256 -16 310 355 30 12 chr1 62180550 62180716 -220012948 + MIR SINE MIR 50 218 -44 292 274 151 27 chr1 62181352 62181498 -220012166 - MIR SINE MIR -57 205 42 420 272 39 63 chr1 62181595 62181849 -220011815 - L2 LINE L2 -187 3085 2838 225 206 15 83 chr1 62182668 62182749 -220010915 - MIR SINE MIR -117 91 17 232 232 32 84 chr1 62183108 62183203 -220010461 - L2 LINE L2 -99 3214 3125 1524 165 32 13 chr1 62183436 62183745 -220009919 - L1MC1 LINE L1 -13 6320 6006 371 291 27 20 chr1 62184769 62184921 -220008743 - MIR3 SINE MIR -65 143 13 1018 164 16 0 chr1 62185492 62185675 -220007989 - MER5A DNA MER1_type 0 189 4 402 255 110 25 chr1 62185984 62186184 -220007480 - L1ME3A LINE L1 -6 6164 5948 1849 167 109 25 chr1 62186746 62187177 -220006487 - MLT1C LTR MaLR 0 467 1 368 258 0 0 chr1 62187560 62187653 -220006011 + MIR SINE MIR 52 144 -118 264 220 15 40 chr1 62187909 62188004 -220005660 - HsTC2 DNA Tc2 -76 1822 13 23 54 0 0 chr1 62188083 62188120 -220005544 + AT_rich Low_complexity Low_complexity 1 37 0 2057 237 63 59 chr1 62188133 62188876 -220004788 - HAL1 LINE L1 -758 1749 1000 1925 170 0 3 chr1 62188876 62189176 -220004488 - AluJb SINE Alu -13 299 1 2057 237 63 59 chr1 62189176 62189283 -220004381 - HAL1 LINE L1 -1507 1000 895 565 270 145 33 chr1 62189315 62189652 -220004012 - HAL1 LINE L1 -1715 792 418 1602 191 11 18 chr1 62189671 62189954 -220003710 - AluJo SINE Alu -31 281 1 891 94 35 18 chr1 62190071 62190242 -220003422 + CT-rich Low_complexity Low_complexity 3 176 0 691 175 22 4 chr1 62190261 62190494 -220003170 + CT-rich Low_complexity Low_complexity 1 237 0 1563 159 0 39 chr1 62190537 62190795 -220002869 - AluJb SINE Alu -64 248 1 2198 138 42 28 chr1 62190795 62191085 -220002579 - L1M1 LINE L1 -696 6309 6024 2405 98 0 0 chr1 62191085 62191382 -220002282 - AluSx SINE Alu -15 297 1 2198 138 42 28 chr1 62191382 62191783 -220001881 - L1M1 LINE L1 -981 6024 5607 2739 126 25 6 chr1 62191810 62192296 -220001368 - L1M1 LINE L1 -1585 5263 4769 1039 155 30 44 chr1 62192317 62192588 -220001076 - L1M1 LINE L1 -2905 3943 3677 1327 165 10 10 chr1 62192601 62192807 -220000857 - AluJb SINE Alu -106 206 1 11005 213 52 24 chr1 62192811 62193939 -219999725 - L1M1 LINE L1 -3235 3613 2518 183 42 0 0 chr1 62193939 62193963 -219999701 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 11005 213 52 24 chr1 62193963 62194031 -219999633 - L1M1 LINE L1 -4330 2518 2453 1725 174 13 34 chr1 62194031 62194329 -219999335 - AluJb SINE Alu -20 292 1 11005 213 52 24 chr1 62194329 62195042 -219998622 - L1M1 LINE L1 -4395 2453 1762 2412 70 0 7 chr1 62195042 62195340 -219998324 - AluY SINE Alu -13 298 3 11005 213 52 24 chr1 62195340 62196937 -219996727 - L1M1 LINE L1 -5086 1762 3 345 219 52 10 chr1 62196944 62197040 -219996624 - HAL1 LINE L1 -2407 100 1 380 232 9 80 chr1 62197105 62197217 -219996447 - MIR SINE MIR -62 146 43 417 240 116 20 chr1 62197533 62197679 -219995985 + MIR SINE MIR 47 206 -56 351 330 25 5 chr1 62197992 62198189 -219995475 + L1M4 LINE L1 4044 4244 -1902 1770 155 7 46 chr1 62198317 62198621 -219995043 - AluJb SINE Alu -20 292 1 201 167 0 0 chr1 62198630 62198666 -219994998 + T-rich Low_complexity Low_complexity 1 36 0 411 317 0 21 chr1 62198689 62198834 -219994830 + L1M4 LINE L1 4381 4522 -1624 342 313 78 24 chr1 62198999 62199165 -219994499 + L1ME4a LINE L1 5944 6118 -3 2419 248 107 70 chr1 62199630 62200194 -219993470 - HAL1 LINE L1 -1388 1119 577 2218 125 3 0 chr1 62200194 62200513 -219993151 - AluSp SINE Alu 0 313 1 2419 248 107 70 chr1 62200513 62201008 -219992656 - HAL1 LINE L1 -1930 577 21 354 355 50 37 chr1 62201018 62201260 -219992404 + HAL1b LINE L1 319 563 -785 2240 116 0 0 chr1 62201366 62201658 -219992006 + AluSq SINE Alu 5 296 -17 1944 138 32 0 chr1 62201854 62202136 -219991528 - AluJb SINE Alu -21 291 1 372 335 30 19 chr1 62202280 62202728 -219990936 + L1M4 LINE L1 2682 3137 -3009 1879 161 38 0 chr1 62202729 62203021 -219990643 + AluJo SINE Alu 1 303 -9 224 306 104 15 chr1 62203201 62203335 -219990329 - MIR3 SINE MIR -62 146 1 2058 132 36 7 chr1 62203818 62204121 -219989543 - AluSq SINE Alu -1 312 1 218 296 133 41 chr1 62204132 62204230 -219989434 + L2 LINE L2 2957 3063 -209 217 149 21 43 chr1 62204281 62204328 -219989336 + L2 LINE L2 3227 3272 0 364 260 20 67 chr1 62204447 62204529 -219989135 - L1MC4 LINE L1 -1 8041 7968 2161 128 37 8 chr1 62204529 62204880 -219988784 - MER46B DNA MER2_type 0 236 1 364 260 20 67 chr1 62204880 62204947 -219988717 - L1MC4 LINE L1 -74 7968 7899 2096 131 10 0 chr1 62205167 62205472 -219988192 - AluJb SINE Alu -4 308 1 314 331 106 12 chr1 62205612 62205772 -219987892 - L2 LINE L2 0 3272 3098 198 103 0 0 chr1 62206208 62206237 -219987427 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 324 70 0 0 chr1 62206247 62206290 -219987374 + (CCTG)n Simple_repeat Simple_repeat 2 44 0 286 261 154 34 chr1 62207314 62207431 -219986233 + MIR SINE MIR 42 170 -63 263 267 39 67 chr1 62207504 62207684 -219985980 - MER20B DNA MER1_type -594 189 15 220 232 0 18 chr1 62207694 62207750 -219985914 - L2 LINE L2 -4 3268 3214 257 276 15 104 chr1 62207946 62208080 -219985584 - L2 LINE L2 -161 3111 2990 388 253 123 53 chr1 62208093 62208162 -219985502 - MIR SINE MIR -5 257 194 2135 133 3 0 chr1 62208162 62208456 -219985208 + AluSx SINE Alu 3 297 -15 388 253 123 53 chr1 62208456 62208556 -219985108 - MIR SINE MIR -68 194 76 1453 196 30 26 chr1 62208563 62208992 -219984672 - MLT1H LTR MaLR 0 549 16 214 392 52 9 chr1 62209086 62209318 -219984346 - L2 LINE L2 -337 2977 2736 2226 110 0 14 chr1 62209329 62209639 -219984025 - AluSq SINE Alu 0 306 1 3022 207 86 31 chr1 62209650 62209712 -219983952 - L1ME1 LINE L1 -6 6160 6103 1736 194 3 3 chr1 62209712 62210011 -219983653 - AluJo SINE Alu -13 299 1 3022 207 86 31 chr1 62210011 62210852 -219982812 - L1ME1 LINE L1 -63 6103 5214 383 267 106 43 chr1 62211082 62211243 -219982421 - L2 LINE L2 -6 3307 3137 262 313 176 8 chr1 62211355 62211486 -219982178 + MIR3 SINE MIR 19 171 -37 405 331 56 40 chr1 62211591 62211842 -219981822 - L3 LINE CR1 -22 1555 1301 1740 83 65 59 chr1 62213083 62213373 -219980291 + MER1B DNA MER1_type 48 339 0 1418 173 57 10 chr1 62213383 62213684 -219979980 + L1ME LINE L1 5254 5568 -598 2335 84 0 10 chr1 62213708 62214004 -219979660 + AluSx SINE Alu 1 293 -19 226 238 179 0 chr1 62214004 62214088 -219979576 + L1MD3 LINE L1 7884 7982 -13 425 179 49 175 chr1 62214141 62214231 -219979433 - Charlie7 DNA MER1_type -862 1750 1650 2461 92 0 16 chr1 62214231 62214548 -219979116 + AluSx SINE Alu 1 312 0 425 179 49 175 chr1 62214548 62214615 -219979049 - Charlie7 DNA MER1_type -962 1650 1576 1710 168 7 13 chr1 62214615 62214913 -219978751 - AluJo SINE Alu -16 296 1 2066 124 47 0 chr1 62214920 62215218 -219978446 - AluSx SINE Alu 0 312 1 425 179 49 175 chr1 62215218 62215297 -219978367 - Charlie7 DNA MER1_type -1042 1570 1536 1348 233 95 6 chr1 62215344 62215691 -219977973 + LTR16C LTR ERVL 114 491 0 231 227 53 0 chr1 62215695 62215770 -219977894 - Charlie7 DNA MER1_type -2533 79 1 330 326 11 0 chr1 62215821 62215916 -219977748 - L3 LINE CR1 -150 1427 1332 196 279 66 0 chr1 62216565 62216626 -219977038 - MIR SINE MIR -63 145 81 1837 233 20 42 chr1 62217263 62217757 -219975907 + MLT2B1 LTR ERVL 1 483 -37 1949 131 53 0 chr1 62217768 62218089 -219975575 + MER7A DNA MER2_type 1 336 -10 387 41 0 0 chr1 62218089 62218138 -219975526 + (TG)n Simple_repeat Simple_repeat 2 50 0 255 95 48 0 chr1 62218138 62218180 -219975484 + MLT2B1 LTR ERVL 472 515 0 * 697 242 43 6 chr1 62218180 62218340 -219975324 + MER63A DNA MER1_type 45 210 0 1324 167 56 13 chr1 62218754 62218988 -219974676 - AluJo SINE Alu -17 295 52 516 264 232 4 chr1 62218988 62219234 -219974430 - MLT1J2 LTR MaLR -139 311 10 275 256 64 0 chr1 62219316 62219394 -219974270 + L2 LINE L2 2571 2653 -661 440 221 58 10 chr1 62220782 62220886 -219972778 - MIR SINE MIR -66 142 34 534 276 50 13 chr1 62221876 62222048 -219971616 - MIR SINE MIR -55 153 3 242 282 155 42 chr1 62222470 62222612 -219971052 - MIR SINE MIR -70 192 35 340 271 15 23 chr1 62222685 62222711 -219970953 - L1MA10 LINE L1 -28 6306 6281 474 281 71 25 chr1 62222711 62222949 -219970715 - L1ME1 LINE L1 -44 6122 5874 185 163 204 0 chr1 62223882 62223931 -219969733 - MIR SINE MIR -62 146 88 514 229 186 44 chr1 62224359 62224542 -219969122 + MIR SINE MIR 28 236 -26 252 362 59 52 chr1 62225065 62225085 -219968579 - L2 LINE L2 -1 3271 3253 2608 57 0 0 chr1 62225085 62225383 -219968281 + AluY SINE Alu 1 298 -13 252 362 59 52 chr1 62225383 62225633 -219968031 - L2 LINE L2 -19 3253 2999 323 256 58 0 chr1 62225672 62225758 -219967906 + L2 LINE L2 3205 3295 -18 510 223 25 0 chr1 62226163 62226284 -219967380 + MER58B DNA MER1_type 207 330 -11 2120 104 3 17 chr1 62226291 62226589 -219967075 + AluSx SINE Alu 4 297 -15 784 261 127 28 chr1 62226617 62227011 -219966653 - L1ME1 LINE L1 -2023 5785 5353 1519 146 345 6 chr1 62227332 62227798 -219965866 + MER45B DNA AcHobo 417 1040 0 679 251 117 35 chr1 62228131 62228410 -219965254 + LTR16A LTR ERVL 51 370 -87 2310 107 10 0 chr1 62228597 62228907 -219964757 - AluSp SINE Alu 0 313 1 1647 177 133 28 chr1 62228910 62229403 -219964261 + MLT1F LTR MaLR 1 542 0 1359 130 53 0 chr1 62229447 62229654 -219964010 - AluSg/x SINE Alu -11 301 84 411 223 43 11 chr1 62229675 62229769 -219963895 + MIR SINE MIR 118 214 -48 1134 269 116 58 chr1 62230116 62230676 -219962988 + L2 LINE L2 72 682 -2632 2506 65 0 10 chr1 62230676 62230984 -219962680 + AluY SINE Alu 1 305 -6 1134 269 116 58 chr1 62230984 62231119 -219962545 + L2 LINE L2 682 808 -2506 566 274 69 0 chr1 62231177 62231352 -219962312 + MER58A DNA MER1_type 37 223 -1 3738 247 183 27 chr1 62231383 62232767 -219960897 + L2 LINE L2 836 2565 -749 2563 66 3 0 chr1 62232767 62233071 -219960593 + AluY SINE Alu 1 305 -6 3738 247 183 27 chr1 62233071 62233481 -219960183 + L2 LINE L2 2565 2910 -404 4336 163 43 19 chr1 62233490 62234654 -219959010 + L1MB5 LINE L1 4915 6148 -26 288 260 33 72 chr1 62234660 62234841 -219958823 + L2 LINE L2 2927 3100 -213 240 313 62 30 chr1 62235508 62235678 -219957986 - MIR SINE MIR -36 226 49 226 214 71 0 chr1 62236055 62236111 -219957553 + MIR SINE MIR 80 139 -123 212 202 132 15 chr1 62236197 62236294 -219957370 + MIR SINE MIR 95 203 -59 1060 75 8 0 chr1 62236323 62236456 -219957208 - AluY SINE Alu -16 295 162 268 311 114 15 chr1 62237132 62237264 -219956400 + MIR SINE MIR 89 233 -29 199 309 128 21 chr1 62237416 62237510 -219956154 + MIR3 SINE MIR 66 169 -39 483 265 102 7 chr1 62237922 62238069 -219955595 + MIR3 SINE MIR 30 190 -18 414 259 66 125 chr1 62238089 62238159 -219955505 + L1ME4a LINE L1 5584 5657 -464 2559 58 0 0 chr1 62238159 62238454 -219955210 + AluY SINE Alu 1 295 -16 414 259 66 125 chr1 62238454 62238703 -219954961 + L1ME4a LINE L1 5657 5884 -237 2186 137 3 0 chr1 62238704 62239011 -219954653 + AluSx SINE Alu 1 308 -4 622 301 70 31 chr1 62239039 62239474 -219954190 + L1ME4a LINE L1 5356 5804 -317 228 135 0 0 chr1 62239489 62239526 -219954138 + (CA)n Simple_repeat Simple_repeat 2 38 0 2011 119 15 67 chr1 62239540 62239690 -219953974 + AluJo SINE Alu 1 126 -186 2194 110 7 13 chr1 62239690 62239990 -219953674 + AluSx SINE Alu 1 298 -14 2011 119 15 67 chr1 62239990 62240167 -219953497 + AluJo SINE Alu 126 311 -1 330 266 92 87 chr1 62240264 62240340 -219953324 + L1ME4a LINE L1 5914 5988 -133 1864 143 84 12 chr1 62240340 62240661 -219953003 + MER2 DNA MER2_type 1 344 0 330 266 92 87 chr1 62240661 62240791 -219952873 + L1ME4a LINE L1 5988 6121 0 278 128 0 0 chr1 62240895 62240934 -219952730 - Alu SINE Alu -262 39 1 240 209 0 0 chr1 62240935 62240978 -219952686 + MIR SINE MIR 103 145 -63 222 324 29 44 chr1 62242011 62242147 -219951517 - MIR SINE MIR -58 150 17 7360 119 38 15 chr1 62243026 62243546 -219950118 + Tigger3b DNA MER2_type 4 511 -2517 1913 151 7 7 chr1 62243546 62243838 -219949826 - AluJb SINE Alu -20 292 1 7360 119 38 15 chr1 62243838 62244518 -219949146 + Tigger3b DNA MER2_type 511 1231 0 498 189 102 174 chr1 62244579 62244854 -219948810 + MIR SINE MIR 2 256 -6 902 285 176 2 chr1 62245357 62245761 -219947903 + L3 LINE CR1 1050 1523 -54 371 253 84 72 chr1 62246180 62246260 -219947404 - L1ME4a LINE L1 -4 6117 6039 2375 107 0 0 chr1 62246260 62246560 -219947104 + AluSx SINE Alu 1 300 -12 371 253 84 72 chr1 62246560 62246645 -219947019 - L1ME4a LINE L1 -82 6039 5950 1639 147 6 27 chr1 62246651 62247004 -219946660 - MER4A LTR ERV1 0 664 261 558 95 53 21 chr1 62247004 62247099 -219946565 - MER4A LTR ERV1 -566 98 1 264 260 0 21 chr1 62247149 62247245 -219946419 - L1ME4a LINE L1 -224 5897 5804 620 231 58 0 chr1 62247251 62247407 -219946257 + L1ME1 LINE L1 36 200 -6196 513 95 83 0 chr1 62247408 62247492 -219946172 + FLAM_A SINE Alu 46 136 -6 2901 245 79 51 chr1 62247505 62247617 -219946047 + L1ME1 LINE L1 193 300 -5915 2062 130 20 3 chr1 62247617 62247909 -219945755 + AluSx SINE Alu 1 297 -15 2901 245 79 51 chr1 62247909 62248113 -219945551 + L1ME1 LINE L1 300 497 -5718 2481 85 0 22 chr1 62248113 62248430 -219945234 + AluSq SINE Alu 1 310 -3 2901 245 79 51 chr1 62248430 62248924 -219944740 + L1ME1 LINE L1 497 1022 -5193 2103 117 10 19 chr1 62248924 62249233 -219944431 + AluSx SINE Alu 1 306 -6 2901 245 79 51 chr1 62249233 62249620 -219944044 + L1ME1 LINE L1 1022 1397 -4818 2063 231 57 9 chr1 62249618 62250263 -219943401 + L1ME1 LINE L1 2934 3609 -2606 * 5913 107 43 26 chr1 62250272 62250363 -219943301 + L1PA13 LINE L1 5027 5115 -1048 2066 137 0 0 chr1 62250363 62250687 -219942977 + AluSx SINE Alu 1 324 0 5913 107 43 26 chr1 62250687 62250747 -219942917 + L1PA13 LINE L1 5115 5172 -991 2279 116 0 3 chr1 62250747 62251050 -219942614 + AluSx SINE Alu 1 302 -10 5913 107 43 26 chr1 62251050 62252019 -219941645 + L1PA13 LINE L1 5172 6163 0 757 205 43 51 chr1 62252064 62252862 -219940802 + L1ME1 LINE L1 5386 6182 -65 278 123 29 0 chr1 62252858 62252912 -219940752 - MIR SINE MIR -131 131 75 * 453 264 109 42 chr1 62252912 62253151 -219940513 - L1ME LINE L1 -316 5805 5551 558 304 121 10 chr1 62253964 62254171 -219939493 - MIR SINE MIR 0 262 33 264 271 43 0 chr1 62254212 62254282 -219939382 - MIR SINE MIR -2 260 188 1072 203 191 32 chr1 62254545 62254954 -219938710 + MLT1K LTR MaLR 3 476 0 340 306 153 14 chr1 62255342 62255486 -219938178 + MIR SINE MIR 21 184 -78 283 354 136 0 chr1 62255576 62255723 -219937941 - L2 LINE L2 -10 3262 3096 184 355 103 0 chr1 62257568 62257675 -219935989 - MIR SINE MIR -52 210 93 259 237 86 0 chr1 62257811 62257904 -219935760 - L2 LINE L2 -30 3242 3142 397 309 116 59 chr1 62258017 62258441 -219935223 + L2 LINE L2 2824 3271 -1 1317 142 50 0 chr1 62258546 62258807 -219934857 + MER33 DNA MER1_type 38 311 -13 1435 181 26 48 chr1 62259134 62259443 -219934221 + AluJo SINE Alu 1 302 -10 1011 186 56 40 chr1 62259620 62259872 -219933792 - L1ME1 LINE L1 -18 6148 5893 22 35 0 0 chr1 62260244 62260273 -219933391 + AT_rich Low_complexity Low_complexity 1 29 0 550 306 71 0 chr1 62260470 62260640 -219933024 + MER5A DNA MER1_type 1 182 -7 2324 93 0 0 chr1 62260692 62260994 -219932670 + AluY SINE Alu 1 302 -9 1786 133 11 7 chr1 62261058 62261343 -219932321 + AluSx SINE Alu 11 296 -16 351 258 208 6 chr1 62261363 62261522 -219932142 - MLT1L LTR MaLR -117 498 308 353 289 81 117 chr1 62261558 62261952 -219931712 - L2 LINE L2 -3 3269 2890 350 294 198 36 chr1 62261974 62262307 -219931357 - L2 LINE L2 -556 2758 2372 324 287 61 17 chr1 62262580 62262761 -219930903 - HAL1b LINE L1 -1 1347 1159 294 260 10 0 chr1 62262881 62262977 -219930687 - L1ME1 LINE L1 -2017 5791 5695 2503 120 54 9 chr1 62263003 62263429 -219930235 - MER65A LTR ERV1 0 445 1 30 27 0 0 chr1 62263433 62263470 -219930194 + AT_rich Low_complexity Low_complexity 1 37 0 828 132 16 0 chr1 62263474 62263603 -219930061 + FLAM_C SINE Alu 1 131 -12 2445 62 0 3 chr1 62263675 62263980 -219929684 - AluY SINE Alu -7 304 1 1793 91 113 11 chr1 62264771 62265036 -219928628 - AluSc SINE Alu -17 292 1 979 192 106 0 chr1 62265070 62265268 -219928396 - MER20 DNA MER1_type 0 219 1 389 78 0 0 chr1 62265406 62265457 -219928207 + Alu SINE Alu 244 294 -6 2339 79 0 3 chr1 62265465 62265770 -219927894 + AluY SINE Alu 3 306 -5 1652 184 46 27 chr1 62265779 62266087 -219927577 - MER69 DNA AcHobo -169 2357 2038 2172 109 3 0 chr1 62266087 62266390 -219927274 - AluSx SINE Alu -8 304 1 1652 184 46 27 chr1 62266390 62266494 -219927170 - MER69 DNA AcHobo -488 2038 1937 268 291 25 13 chr1 62266490 62266569 -219927095 - MER69 DNA AcHobo -1146 80 1 * 250 336 48 24 chr1 62266791 62266916 -219926748 - L2 LINE L2 -4 3309 3182 2440 192 97 18 chr1 62266996 62267491 -219926173 + MLT2B3 LTR ERVL 1 534 -20 318 50 0 0 chr1 62267491 62267531 -219926133 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 314 110 0 137 chr1 62267541 62267614 -219926050 + MLT2B3 LTR ERVL 458 554 0 2540 86 136 5 chr1 62267781 62268177 -219925487 - LTR7 LTR ERV1 -2 448 1 2382 106 48 13 chr1 62268177 62268556 -219925108 - HERVH LTR ERV1 0 7713 7322 1278 148 23 9 chr1 62268554 62268771 -219924893 - HERVH LTR ERV1 -1894 5819 5600 * 4387 148 0 1 chr1 62268772 62269435 -219924229 - HERVH LTR ERV1 -2564 5149 4488 3332 121 4 6 chr1 62269437 62269940 -219923724 - HERVH LTR ERV1 -3720 3993 3492 900 142 20 0 chr1 62269930 62270078 -219923586 - HERVH LTR ERV1 -4423 3290 3140 * 20977 97 11 11 chr1 62270072 62273061 -219920603 - HERVH LTR ERV1 -4726 2987 1 2564 90 128 5 chr1 62273063 62273462 -219920202 - LTR7 LTR ERV1 -2 448 1 190 211 158 35 chr1 62273828 62273885 -219919779 + L2 LINE L2 3160 3223 -49 1561 177 0 7 chr1 62273923 62274206 -219919458 - AluJo SINE Alu -19 293 13 916 226 40 0 chr1 62275378 62275555 -219918109 + MER5A DNA MER1_type 3 186 -3 2127 85 3 3 chr1 62275564 62275877 -219917787 + AluY SINE Alu 1 313 0 543 113 31 31 chr1 62275894 62275991 -219917673 + MER4A LTR ERV1 2 98 -566 1557 136 9 95 chr1 62275991 62276343 -219917321 + MER4A LTR ERV1 261 640 -24 1272 114 0 0 chr1 62276344 62276519 -219917145 + AluSx SINE Alu 1 175 -137 189 0 0 0 chr1 62276547 62276568 -219917096 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 245 234 234 0 chr1 62276614 62276708 -219916956 - L3 LINE CR1 -243 1334 1219 3279 86 0 13 chr1 62276749 62277203 -219916461 - LTR7 LTR ERV1 -2 448 1 2485 65 0 0 chr1 62277211 62277520 -219916144 - AluY SINE Alu -2 309 1 23218 78 8 5 chr1 62277520 62280580 -219913084 - HERVH LTR ERV1 -2 7711 4641 1087 116 18 0 chr1 62280571 62280735 -219912929 - HERVH LTR ERV1 -4392 3321 3155 * 184 281 56 56 chr1 62280795 62280884 -219912780 - MIR SINE MIR -6 256 168 6270 52 30 1 chr1 62280886 62281644 -219912020 - LTR17 LTR ERV1 0 780 1 14284 54 5 7 chr1 62281644 62282148 -219911516 - HERV17 LTR ERV1 0 8626 8122 2092 101 3 0 chr1 62282148 62282487 -219911177 + AluY SINE Alu 1 340 0 14284 54 5 7 chr1 62282487 62283709 -219909955 - HERV17 LTR ERV1 -504 8122 6902 * 35859 57 7 1 chr1 62283700 62288676 -219904988 - HERV17 LTR ERV1 -3559 5067 1 5718 63 68 3 chr1 62288676 62289408 -219904256 - LTR17 LTR ERV1 0 780 1 330 276 69 62 chr1 62289412 62289557 -219904107 - MIR SINE MIR -97 165 20 801 293 29 12 chr1 62289645 62289891 -219903773 + MIR SINE MIR 3 252 -10 363 338 39 42 chr1 62289986 62290294 -219903370 + L2 LINE L2 2567 2873 -441 335 285 124 57 chr1 62290582 62290775 -219902889 + MIR SINE MIR 20 225 -37 2121 122 0 0 chr1 62290859 62291162 -219902502 - AluSx SINE Alu -9 303 1 1979 93 4 14 chr1 62291206 62291485 -219902179 - AluY SINE Alu -35 276 1 216 278 0 0 chr1 62291664 62291718 -219901946 - L2 LINE L2 -37 3235 3182 777 126 30 7 chr1 62291948 62292083 -219901581 - L1MB7 LINE L1 -18 6166 6029 3136 78 29 20 chr1 62292093 62292541 -219901123 - L1PA13 LINE L1 -2 6161 5710 2055 118 3 7 chr1 62293379 62293684 -219899980 + AluSx SINE Alu 1 304 -8 211 348 98 6 chr1 62293701 62293865 -219899799 + L2 LINE L2 1784 1962 -1352 6975 82 5 16 chr1 62293886 62294877 -219898787 - MER11C LTR ERVK 0 1071 1 247 139 0 0 chr1 62295175 62295211 -219898453 - MER52A LTR ERV1 -511 1244 1209 340 320 73 40 chr1 62295397 62295547 -219898117 - MIR SINE MIR -71 191 37 442 220 30 0 chr1 62295667 62295767 -219897897 - MER5A DNA MER1_type -83 106 4 372 321 22 44 chr1 62295783 62295920 -219897744 - MIR SINE MIR -59 149 15 615 178 22 22 chr1 62295922 62295996 -219897668 + LTR50 LTR ERVL 1 77 -718 1642 183 56 31 chr1 62295996 62296352 -219897312 + MLT1A1 LTR MaLR 1 365 0 615 178 22 22 chr1 62296352 62296412 -219897252 + LTR50 LTR ERVL 76 135 -660 913 60 26 7 chr1 62296426 62296577 -219897087 + (GA)n Simple_repeat Simple_repeat 1 154 0 724 249 147 4 chr1 62296591 62296978 -219896686 + LTR50 LTR ERVL 220 754 -41 285 29 0 0 chr1 62297124 62297158 -219896506 + (CA)n Simple_repeat Simple_repeat 2 35 0 228 308 77 0 chr1 62297718 62297796 -219895868 - L2 LINE L2 -4 3268 3185 200 324 162 0 chr1 62297826 62297937 -219895727 - L2 LINE L2 0 3272 3144 846 223 0 6 chr1 62297991 62298157 -219895507 - AluJb SINE Alu -15 297 133 738 264 104 13 chr1 62298264 62298495 -219895169 + MIR SINE MIR 8 259 -3 190 328 17 0 chr1 62298531 62298589 -219895075 - MIR SINE MIR -52 210 152 228 325 32 45 chr1 62298832 62298986 -219894678 + L2 LINE L2 2730 2881 -433 2227 134 74 20 chr1 62300576 62300825 -219892839 - MSTB LTR MaLR 0 426 143 1574 131 108 0 chr1 62300825 62301112 -219892552 + AluSx SINE Alu 1 315 0 2227 134 74 20 chr1 62301112 62301264 -219892400 - MSTB LTR MaLR -283 143 1 2198 94 17 3 chr1 62301828 62302126 -219891538 + AluSq SINE Alu 1 302 -11 342 354 0 0 chr1 62302137 62302233 -219891431 - L1MC4 LINE L1 -1339 6703 6608 318 307 27 44 chr1 62302539 62302764 -219890900 - LTR24C-int LTR ERV1 -3797 4938 4718 279 304 49 68 chr1 62303160 62303360 -219890304 - LTR24C-int LTR ERV1 -4379 4047 3856 2084 128 0 3 chr1 62303360 62303657 -219890007 - AluSx SINE Alu -16 296 1 279 304 49 68 chr1 62303657 62303821 -219889843 - LTR24C-int LTR ERV1 -4570 3856 3690 2345 114 22 30 chr1 62303960 62304327 -219889337 - THE1B LTR MaLR 0 364 1 746 318 24 47 chr1 62304402 62304449 -219889215 - LTR24C-int LTR ERV1 -4064 583 536 1989 116 0 71 chr1 62304449 62304785 -219888879 + AluSx SINE Alu 1 312 0 746 318 24 47 chr1 62304785 62305118 -219888546 - LTR24C-int LTR ERV1 -4111 536 212 702 180 31 0 chr1 62305128 62305256 -219888408 - FLAM_C SINE Alu 0 143 12 275 152 87 0 chr1 62305256 62305302 -219888362 - Alu SINE Alu -252 50 1 2042 82 0 0 chr1 62305594 62305862 -219887802 + AluY SINE Alu 44 311 0 369 59 0 0 chr1 62306056 62306107 -219887557 - AluY SINE Alu 0 302 252 1212 65 0 19 chr1 62306109 62306264 -219887400 - AluY SINE Alu -159 152 1 180 111 0 0 chr1 62306303 62306330 -219887334 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 519 60 0 0 chr1 62306364 62306431 -219887233 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 1901 132 0 0 chr1 62306436 62306709 -219886955 - AluSx SINE Alu -39 273 1 208 304 0 13 chr1 62307850 62307929 -219885735 + GA-rich Low_complexity Low_complexity 3 80 0 466 292 110 61 chr1 62308301 62308565 -219885099 - LTR24C-int LTR ERV1 -6077 681 405 678 280 33 69 chr1 62308677 62308795 -219884869 - LTR24C-int LTR ERV1 -4519 604 483 2085 132 44 16 chr1 62308795 62309160 -219884504 - THE1C LTR MaLR 0 375 1 678 280 33 69 chr1 62309160 62309520 -219884144 - LTR24C-int LTR ERV1 -4640 483 1 2711 155 102 37 chr1 62309529 62310117 -219883547 - LTR24C LTR ERV1 -9 626 1 914 269 83 19 chr1 62310146 62310518 -219883146 + LTR68 LTR ERV1 1 396 -344 260 311 67 25 chr1 62310717 62310836 -219882828 - L2 LINE L2 -15 3257 3134 3580 138 20 0 chr1 62311005 62311557 -219882107 - Tigger7 DNA MER2_type -1545 942 380 550 282 134 56 chr1 62311557 62311966 -219881698 + L2 LINE L2 2627 3003 -310 1843 133 86 47 chr1 62311966 62312327 -219881337 + THE1C LTR MaLR 1 375 0 11741 92 12 6 chr1 62312328 62313897 -219879767 + THE1C-int LTR MaLR 2 1580 0 1915 147 52 33 chr1 62313897 62314265 -219879399 + THE1C LTR MaLR 1 375 0 550 282 134 56 chr1 62314265 62314345 -219879319 + L2 LINE L2 3003 3075 -238 1439 147 28 94 chr1 62314345 62314665 -219878999 + AluJb SINE Alu 1 299 -13 550 282 134 56 chr1 62314665 62314769 -219878895 + L2 LINE L2 3075 3285 -28 399 310 28 21 chr1 62316159 62316301 -219877363 + MIR SINE MIR 40 182 -80 2170 83 40 0 chr1 62316604 62316904 -219876760 - AluSp SINE Alu -1 312 1 259 258 56 118 chr1 62317019 62317078 -219876586 - MIR SINE MIR -80 182 121 1982 137 0 10 chr1 62317078 62317378 -219876286 - AluSx SINE Alu -15 297 1 259 258 56 118 chr1 62317378 62317496 -219876168 - MIR SINE MIR -141 121 16 287 272 25 12 chr1 62317570 62317651 -219876013 - MIR SINE MIR -61 147 66 2238 71 13 29 chr1 62317725 62318036 -219875628 - AluY SINE Alu -5 306 1 2226 95 0 3 chr1 62318514 62318819 -219874845 - AluY SINE Alu -7 304 1 2380 135 22 0 chr1 62318819 62319175 -219874489 - THE1B LTR MaLR 0 364 1 686 185 15 15 chr1 62319391 62319521 -219874143 + FLAM_C SINE Alu 1 130 -3 2071 105 0 3 chr1 62319531 62319825 -219873839 - AluSg SINE Alu -17 293 1 213 320 132 25 chr1 62319905 62320102 -219873562 - L2 LINE L2 -553 2761 2544 327 202 178 47 chr1 62320910 62320951 -219872713 + MIR SINE MIR 60 94 -168 3398 153 20 77 chr1 62320951 62321683 -219871981 - LTR8 LTR ERV1 0 691 1 327 202 178 47 chr1 62321683 62321770 -219871894 + MIR SINE MIR 94 205 -57 4350 72 5 4 chr1 62321824 62322377 -219871287 + MER41A LTR ERV1 1 554 0 331 108 150 0 chr1 62322377 62322452 -219871212 + MER41A-int LTR ERV1 1 55 -5891 841 234 141 9 chr1 62323223 62323450 -219870214 + MIR SINE MIR 3 259 -3 270 328 49 0 chr1 62323543 62323665 -219869999 - MIR SINE MIR -50 212 85 660 266 83 85 chr1 62323824 62324092 -219869572 - MLT1J2 LTR MaLR -1 445 190 488 304 40 24 chr1 62324206 62324459 -219869205 - L2 LINE L2 -192 3080 2824 927 235 121 59 chr1 62324676 62325149 -219868515 - L1M4 LINE L1 -1780 4366 3865 828 202 77 6 chr1 62325172 62325254 -219868410 + MER20 DNA MER1_type 1 76 -143 207 0 0 0 chr1 62325254 62325277 -219868387 + (TG)n Simple_repeat Simple_repeat 1 23 0 828 202 77 6 chr1 62325277 62325362 -219868302 + MER20 DNA MER1_type 76 180 -39 2571 95 53 0 chr1 62325367 62325725 -219867939 + MER51B LTR ERV1 1 377 0 7494 148 18 25 chr1 62325725 62326983 -219866681 + MER51B-int LTR ERV1 1 1250 -6566 218 238 0 0 chr1 62327071 62327113 -219866551 + (TA)n Simple_repeat Simple_repeat 1 42 0 378 212 2 92 chr1 62327113 62327238 -219866426 + L1MC4 LINE L1 1995 6983 -1339 1372 229 32 45 chr1 62327275 62327672 -219865992 + LTR10C LTR ERV1 188 547 0 630 66 0 0 chr1 62327675 62327751 -219865913 - tRNA-Lys-AAG tRNA tRNA 0 76 1 442 45 15 30 chr1 62327781 62327848 -219865816 + MER51B-int LTR ERV1 1185 1250 -6566 2469 120 34 12 chr1 62327848 62328257 -219865407 + MER51B-int LTR ERV1 802 1219 -6901 439 181 60 60 chr1 62328257 62328373 -219865291 + MER4A LTR ERV1 1 116 -548 852 143 30 77 chr1 62328392 62328560 -219865104 + MER4A LTR ERV1 372 531 -133 8569 99 68 24 chr1 62328562 62329503 -219864161 + MER51B-int LTR ERV1 1799 2832 -4984 2074 107 0 0 chr1 62329503 62329812 -219863852 + AluSg1 SINE Alu 1 309 0 8569 99 68 24 chr1 62329812 62330332 -219863332 + MER51B-int LTR ERV1 2832 3327 -4489 2593 134 98 20 chr1 62330314 62330815 -219862849 + MER51B-int LTR ERV1 2829 3368 -2578 * 522 54 0 0 chr1 62330794 62330868 -219862796 + MER51B-int LTR ERV1 2210 2283 -2934 * 7825 149 99 47 chr1 62330858 62333391 -219860273 + MER51B-int LTR ERV1 5199 7816 0 2394 83 112 0 chr1 62333392 62333731 -219859933 + MER51B LTR ERV1 1 377 0 1787 153 11 0 chr1 62333773 62334060 -219859604 - AluJo SINE Alu -18 294 5 235 278 0 42 chr1 62334065 62334137 -219859527 - L1M4 LINE L1 -2310 3836 3768 429 121 0 0 chr1 62334153 62334219 -219859445 - AluSp/q SINE Alu -8 305 240 718 234 16 5 chr1 62334220 62334412 -219859252 - L1M4 LINE L1 -2379 3767 3574 396 322 27 27 chr1 62334955 62335101 -219858563 + MIR SINE MIR 21 166 -96 243 278 60 60 chr1 62335109 62335128 -219858536 - LTR67 LTR ERVL -51 506 488 2074 97 0 32 chr1 62335128 62335436 -219858228 + AluSq SINE Alu 1 298 -15 243 278 60 60 chr1 62335436 62335567 -219858097 - LTR67 LTR ERVL -68 489 356 776 252 161 54 chr1 62335876 62336324 -219857340 + MLT1L LTR MaLR 118 613 -2 275 238 25 12 chr1 62337379 62337459 -219856205 + MIR SINE MIR 70 150 -112 486 244 113 12 chr1 62337578 62337738 -219855926 + MER104 DNA MER2_type 5 180 0 1392 174 43 59 chr1 62337761 62337956 -219855708 - MER58B DNA MER1_type -2080 340 150 2134 112 0 0 chr1 62337956 62338251 -219855413 - AluSg SINE Alu -15 295 1 1392 174 43 59 chr1 62338251 62338377 -219855287 - MER58B DNA MER1_type -2270 150 24 238 247 0 78 chr1 62338548 62338625 -219855039 - L2 LINE L2 -203 3069 2999 233 159 0 23 chr1 62339110 62339154 -219854510 + MLT1K LTR MaLR 190 232 -356 337 324 79 14 chr1 62339523 62339739 -219853925 - L2 LINE L2 -626 2688 2459 238 292 106 9 chr1 62339794 62339907 -219853757 - L2 LINE L2 -1026 2288 2165 2080 95 9 49 chr1 62340138 62340464 -219853200 - AluSq SINE Alu 0 313 1 279 259 0 0 chr1 62340737 62340795 -219852869 + MIR SINE MIR 99 156 -106 27 0 0 0 chr1 62341921 62341948 -219851716 + AT_rich Low_complexity Low_complexity 1 27 0 338 260 19 111 chr1 62342108 62342316 -219851348 - MIR3 SINE MIR -6 202 14 * 353 225 50 67 chr1 62342313 62342433 -219851231 - MIR3 SINE MIR -46 162 45 324 265 265 0 chr1 62342910 62343061 -219850603 - MIR3 SINE MIR -12 196 6 310 172 46 103 chr1 62343719 62343806 -219849858 - L2 LINE L2 -2 3311 3230 409 229 103 134 chr1 62343880 62344028 -219849636 + MIR SINE MIR 6 144 -118 2856 168 30 19 chr1 62344028 62344604 -219849060 + L1MB8 LINE L1 5597 6178 0 409 229 103 134 chr1 62344604 62344708 -219848956 + MIR SINE MIR 144 250 -12 2327 79 3 0 chr1 62344709 62345012 -219848652 - AluSp SINE Alu -9 304 1 2351 191 98 40 chr1 62345521 62346050 -219847614 + MLT1E2 LTR MaLR 64 623 -3 1239 219 75 31 chr1 62346172 62346372 -219847292 - MER58B DNA MER1_type -2079 341 120 1974 132 7 0 chr1 62346372 62346675 -219846989 - AluSx SINE Alu -7 305 1 1239 219 75 31 chr1 62346675 62346793 -219846871 - MER58B DNA MER1_type -2300 120 9 251 323 42 10 chr1 62346862 62346958 -219846706 + MIR SINE MIR 23 121 -87 410 115 42 73 chr1 62347224 62347320 -219846344 - MER20 DNA MER1_type 0 219 127 1836 118 14 24 chr1 62347322 62347610 -219846054 - AluSx SINE Alu -27 285 1 189 107 0 0 chr1 62347675 62347703 -219845961 + (A)n Simple_repeat Simple_repeat 1 28 0 210 336 34 25 chr1 62347771 62347890 -219845774 - L2 LINE L2 -181 3091 2972 244 212 38 121 chr1 62348199 62348331 -219845333 + MIR SINE MIR 1 121 -141 216 328 47 0 chr1 62348789 62348853 -219844811 - MIR SINE MIR -70 192 126 210 260 135 62 chr1 62349218 62349314 -219844350 + MIR SINE MIR 28 130 -78 244 236 0 28 chr1 62349348 62349420 -219844244 + MIR SINE MIR 61 130 -78 230 247 52 41 chr1 62349590 62349687 -219843977 + L2 LINE L2 2883 2980 -292 216 158 0 0 chr1 62349731 62349769 -219843895 + (CA)n Simple_repeat Simple_repeat 2 39 0 239 220 140 30 chr1 62349825 62349925 -219843739 - MIR SINE MIR -53 209 99 288 180 40 90 chr1 62350115 62350215 -219843449 + MIR3 SINE MIR 89 183 -25 1976 103 0 0 chr1 62351145 62351418 -219842246 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr1 62351427 62351450 -219842214 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 31 44 0 0 chr1 62351702 62351747 -219841917 + AT_rich Low_complexity Low_complexity 1 45 0 214 246 70 0 chr1 62351769 62351826 -219841838 - MIR SINE MIR -108 154 94 291 258 22 56 chr1 62352702 62352791 -219840873 + MIR SINE MIR 165 250 -12 182 57 57 0 chr1 62352907 62352942 -219840722 + T-rich Low_complexity Low_complexity 1 180 0 2011 95 0 34 chr1 62352942 62353232 -219840432 - AluSx SINE Alu -27 281 1 286 225 14 29 chr1 62353378 62353463 -219840201 + MIR SINE MIR 80 145 -63 201 74 0 0 chr1 62353854 62353881 -219839783 + (CA)n Simple_repeat Simple_repeat 1 27 0 441 272 128 45 chr1 62354402 62354667 -219838997 - L2 LINE L2 -19 3253 2967 243 300 26 90 chr1 62354789 62355022 -219838642 - L1ME4a LINE L1 -199 5922 5676 363 44 0 0 chr1 62355022 62355067 -219838597 + (TG)n Simple_repeat Simple_repeat 1 45 0 2137 93 0 0 chr1 62355067 62355346 -219838318 - AluSx SINE Alu -33 279 1 243 300 26 90 chr1 62355346 62355378 -219838286 - L1ME4a LINE L1 -443 5678 5673 492 260 70 3 chr1 62355668 62355855 -219837809 - MIR SINE MIR -16 246 43 338 321 136 25 chr1 62356338 62356569 -219837095 - L2 LINE L2 -9 3263 3006 462 335 19 7 chr1 62356569 62356724 -219836940 + MIR SINE MIR 1 157 -105 934 281 16 0 chr1 62356729 62356975 -219836689 - MIR SINE MIR 0 262 13 294 330 20 0 chr1 62356976 62357076 -219836588 + MIR SINE MIR 158 259 -3 543 169 42 96 chr1 62357168 62357377 -219836287 - MER106B DNA MER1_type 0 1059 30 355 200 15 0 chr1 62357773 62357838 -219835826 - MER2 DNA MER2_type 0 345 280 470 289 41 36 chr1 62357864 62358058 -219835606 - MIR3 SINE MIR -4 204 10 410 292 15 31 chr1 62358521 62358651 -219835013 - L2 LINE L2 -1 3312 3185 280 290 43 29 chr1 62358688 62358826 -219834838 + MIR SINE MIR 57 196 -66 281 286 33 0 chr1 62358919 62359010 -219834654 - MIR SINE MIR -73 189 96 221 274 179 0 chr1 62359093 62359188 -219834476 + MIR SINE MIR 124 235 -27 315 173 40 13 chr1 62359791 62359866 -219833798 - MIR SINE MIR -111 151 75 395 325 100 5 chr1 62360561 62360761 -219832903 - MIR SINE MIR -30 232 14 354 275 55 0 chr1 62361071 62361162 -219832502 + L3 LINE CR1 1394 1489 -88 290 246 0 0 chr1 62361958 62362015 -219831649 + L2 LINE L2 3205 3261 -11 632 236 182 4 chr1 62362023 62362248 -219831416 - MLT1H1 LTR MaLR 0 555 291 544 258 33 50 chr1 62362305 62362359 -219831305 + MIR SINE MIR 20 73 -189 1272 181 132 8 chr1 62362359 62362625 -219831039 - AluJb SINE Alu -13 299 1 544 258 33 50 chr1 62362625 62362752 -219830912 + MIR SINE MIR 73 198 -64 259 214 0 0 chr1 62362903 62362959 -219830705 - L3 LINE CR1 -96 1481 1426 192 197 16 66 chr1 62363048 62363109 -219830555 - MIR SINE MIR -93 115 58 321 286 19 50 chr1 62363306 62363467 -219830197 + L2 LINE L2 2610 2765 -549 2329 84 7 3 chr1 62363523 62363831 -219829833 + AluSg1 SINE Alu 1 309 0 198 267 69 76 chr1 62364324 62364455 -219829209 - MIR3 SINE MIR -54 154 25 1306 211 106 32 chr1 62365037 62365773 -219827891 - L2 LINE L2 -49 3264 2482 205 262 66 0 chr1 62365884 62365945 -219827719 + L2 LINE L2 2909 2973 -340 23 0 0 0 chr1 62366647 62366670 -219826994 + AT_rich Low_complexity Low_complexity 1 23 0 465 222 118 35 chr1 62368056 62368200 -219825464 - MIR SINE MIR -99 163 8 747 221 96 15 chr1 62368240 62368439 -219825225 + MIR SINE MIR 48 262 0 378 0 0 0 chr1 62369328 62369370 -219824294 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 300 268 178 34 chr1 62369780 62369967 -219823697 + MIR SINE MIR 4 201 -61 238 228 35 0 chr1 62370085 62370142 -219823522 - MIR SINE MIR -144 118 60 353 309 9 0 chr1 62370153 62370263 -219823401 + MIR SINE MIR 43 153 -55 378 0 0 0 chr1 62371011 62371053 -219822611 + (TG)n Simple_repeat Simple_repeat 2 43 0 263 296 151 17 chr1 62371550 62371919 -219821745 - L2 LINE L2 -226 3046 2584 323 289 37 7 chr1 62372107 62372242 -219821422 + L2 LINE L2 2873 3011 -261 285 247 86 0 chr1 62373412 62373493 -219820171 + MIR SINE MIR 121 208 -54 194 270 16 32 chr1 62373827 62373890 -219819774 + MIR3 SINE MIR 94 155 -53 2208 92 3 0 chr1 62373962 62374254 -219819410 - AluSp SINE Alu -12 301 9 2107 112 7 0 chr1 62374263 62374559 -219819105 - AluSx SINE Alu -14 298 1 520 282 26 70 chr1 62374559 62374776 -219818888 - MIR SINE MIR -44 218 10 454 318 67 22 chr1 62375073 62375296 -219818368 - L3 LINE CR1 -1 1576 1344 1434 155 126 11 chr1 62375319 62375449 -219818215 - AluJb SINE Alu 0 302 188 1770 106 0 0 chr1 62375449 62375685 -219817979 + AluSx SINE Alu 60 295 -17 1434 155 126 11 chr1 62375685 62375825 -219817839 - AluJb SINE Alu -114 188 1 338 329 57 14 chr1 62375983 62376123 -219817541 + MIR SINE MIR 47 192 -70 1118 236 130 25 chr1 62376493 62376892 -219816772 + MLT1C LTR MaLR 1 441 -26 1605 158 54 4 chr1 62377174 62377453 -219816211 + AluJo SINE Alu 1 293 -19 2421 59 7 0 chr1 62377885 62378188 -219815476 - AluY SINE Alu -5 306 2 2013 89 46 0 chr1 62378970 62379250 -219814414 + AluSx SINE Alu 1 293 -19 306 0 0 0 chr1 62379250 62379284 -219814380 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr1 62379304 62379324 -219814340 + (TC)n Simple_repeat Simple_repeat 1 20 0 197 229 21 0 chr1 62379466 62379514 -219814150 - MER5B DNA MER1_type -128 50 2 643 259 43 5 chr1 62380301 62380486 -219813178 + MIR SINE MIR 4 195 -67 575 176 0 0 chr1 62380496 62380587 -219813077 + AluS SINE Alu 2 92 -220 1171 110 6 0 chr1 62380707 62380870 -219812794 + AluSc SINE Alu 93 256 -53 226 305 0 0 chr1 62380874 62380933 -219812731 + MIR SINE MIR 204 262 0 207 356 55 25 chr1 62380892 62381055 -219812609 - MIR SINE MIR -36 226 59 * 757 243 30 80 chr1 62381228 62381324 -219812340 - MIR SINE MIR -11 251 152 2160 99 0 0 chr1 62381324 62381616 -219812048 - AluSx SINE Alu -9 303 12 757 243 30 80 chr1 62381616 62381782 -219811882 - MIR SINE MIR -110 152 2 512 289 88 40 chr1 62381791 62381807 -219811857 + MIR SINE MIR 1 15 -247 789 216 10 36 chr1 62381807 62381921 -219811743 - MER5A DNA MER1_type 0 189 81 1932 122 24 11 chr1 62381921 62382208 -219811456 - AluSx SINE Alu -21 291 1 789 216 10 36 chr1 62382208 62382287 -219811377 - MER5A DNA MER1_type -108 81 1 512 289 88 40 chr1 62382287 62382498 -219811166 + MIR SINE MIR 15 239 -23 553 290 0 0 chr1 62382555 62382686 -219810978 + MIR3 SINE MIR 51 181 -27 267 53 0 0 chr1 62383379 62383417 -219810247 - L2 LINE L2 -221 3051 3014 839 250 31 13 chr1 62383497 62383744 -219809920 - MIR SINE MIR 0 262 13 2446 141 13 51 chr1 62383744 62384105 -219809559 - L1MB3 LINE L1 -2 6181 5839 2278 104 0 0 chr1 62384105 62384412 -219809252 - AluSx SINE Alu 0 312 6 2446 141 13 51 chr1 62384412 62384503 -219809161 - L1MB3 LINE L1 -344 5839 5746 309 247 140 21 chr1 62384642 62384735 -219808929 - L2 LINE L2 -214 3058 2955 228 157 0 114 chr1 62384909 62384979 -219808685 + MIR SINE MIR 18 79 -129 308 273 169 16 chr1 62385017 62385200 -219808464 - MIR SINE MIR -6 256 46 1781 153 7 10 chr1 62385625 62385913 -219807751 + AluSx SINE Alu 1 287 -25 33 0 0 0 chr1 62385914 62385947 -219807717 + AT_rich Low_complexity Low_complexity 1 33 0 1991 204 23 105 chr1 62385955 62386291 -219807373 + L1ME3 LINE L1 5203 5565 -597 2344 93 0 3 chr1 62386291 62386604 -219807060 - AluSp SINE Alu -1 312 1 1991 204 23 105 chr1 62386604 62386702 -219806962 + L1ME3 LINE L1 5565 5669 -493 1527 186 89 49 chr1 62386702 62387051 -219806613 + MLT1A1 LTR MaLR 1 363 -2 1991 204 23 105 chr1 62387051 62387383 -219806281 + L1ME3 LINE L1 5669 5907 -255 2239 96 7 0 chr1 62387383 62387686 -219805978 + AluSp SINE Alu 1 305 -8 1216 133 0 0 chr1 62387686 62387859 -219805805 + AluSg/x SINE Alu 132 304 -6 1296 88 0 6 chr1 62387861 62388058 -219805606 + AluSp SINE Alu 122 317 0 771 196 63 96 chr1 62388065 62388155 -219805509 + L1ME3 LINE L1 5899 5990 -172 757 176 16 172 chr1 62388155 62388411 -219805253 + MER20 DNA MER1_type 1 216 -3 771 196 63 96 chr1 62388411 62388591 -219805073 + L1ME3 LINE L1 5990 6160 -2 1479 182 44 6 chr1 62388639 62388959 -219804705 + L1 LINE L1 4625 4956 -1190 964 105 26 207 chr1 62388959 62389175 -219804489 + L1MB3 LINE L1 5921 6174 3 1694 142 77 0 chr1 62389175 62389449 -219804215 + AluSx SINE Alu 1 295 -17 964 105 26 207 chr1 62389449 62389460 -219804204 + L1MB3 LINE L1 6174 6185 14 1548 199 10 10 chr1 62389460 62389766 -219803898 + AluJo SINE Alu 1 306 -6 964 105 26 207 chr1 62389766 62389787 -219803877 + L1MB3 LINE L1 6185 6208 37 1433 183 3 32 chr1 62389787 62390099 -219803565 + AluSx SINE Alu 1 303 -9 752 206 8 0 chr1 62390108 62390239 -219803425 - FLAM_C SINE Alu -1 132 1 964 105 26 207 chr1 62390239 62390283 -219803381 + L1MB3 LINE L1 6120 6170 -1 2009 104 37 7 chr1 62390306 62390605 -219803059 - AluY SINE Alu -2 309 2 2013 89 46 0 chr1 62391387 62391667 -219801997 + AluSx SINE Alu 1 293 -19 306 0 0 0 chr1 62391667 62391701 -219801963 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr1 62391721 62391741 -219801923 + (TC)n Simple_repeat Simple_repeat 1 20 0 197 229 21 0 chr1 62391884 62391932 -219801732 - MER5B DNA MER1_type -128 50 2 643 259 43 5 chr1 62392719 62392904 -219800760 + MIR SINE MIR 4 195 -67 575 176 0 0 chr1 62392914 62393005 -219800659 + AluS SINE Alu 2 92 -220 1171 110 6 0 chr1 62393125 62393288 -219800376 + AluSc SINE Alu 93 256 -53 226 305 0 0 chr1 62393292 62393351 -219800313 + MIR SINE MIR 204 262 0 207 356 55 25 chr1 62393310 62393473 -219800191 - MIR SINE MIR -36 226 59 * 757 243 30 80 chr1 62393646 62393742 -219799922 - MIR SINE MIR -11 251 152 2160 99 0 0 chr1 62393742 62394034 -219799630 - AluSx SINE Alu -9 303 12 757 243 30 80 chr1 62394034 62394200 -219799464 - MIR SINE MIR -110 152 2 512 289 88 40 chr1 62394209 62394225 -219799439 + MIR SINE MIR 1 15 -247 789 216 10 36 chr1 62394225 62394339 -219799325 - MER5A DNA MER1_type 0 189 81 1932 122 24 11 chr1 62394339 62394626 -219799038 - AluSx SINE Alu -21 291 1 789 216 10 36 chr1 62394626 62394705 -219798959 - MER5A DNA MER1_type -108 81 1 512 289 88 40 chr1 62394705 62394916 -219798748 + MIR SINE MIR 15 239 -23 553 290 0 0 chr1 62394973 62395104 -219798560 + MIR3 SINE MIR 51 181 -27 267 53 0 0 chr1 62395797 62395835 -219797829 - L2 LINE L2 -221 3051 3014 839 250 31 13 chr1 62395915 62396162 -219797502 - MIR SINE MIR 0 262 13 2380 140 13 57 chr1 62396162 62396526 -219797138 - L1MB3 LINE L1 -2 6181 5839 2098 108 0 25 chr1 62396526 62396841 -219796823 - AluSx SINE Alu 0 312 6 2380 140 13 57 chr1 62396841 62396932 -219796732 - L1MB3 LINE L1 -344 5839 5746 275 250 152 22 chr1 62397071 62397163 -219796501 - L2 LINE L2 -214 3058 2955 228 157 0 114 chr1 62397337 62397407 -219796257 + MIR SINE MIR 18 79 -129 308 273 169 16 chr1 62397445 62397628 -219796036 - MIR SINE MIR -6 256 46 672 178 123 0 chr1 62398055 62398201 -219795463 + MIR SINE MIR 79 242 -20 1969 142 3 0 chr1 62398662 62398965 -219794699 - AluSq SINE Alu -9 304 1 1044 53 29 18 chr1 62398966 62399136 -219794528 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 186 133 0 0 chr1 62399136 62399166 -219794498 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 1784 147 26 10 chr1 62399166 62399473 -219794191 - AluSx SINE Alu 0 312 1 2850 66 0 3 chr1 62399854 62400233 -219793431 - HERVK9 LTR ERVK -3042 2874 2497 279 253 11 59 chr1 62400327 62400410 -219793254 + MIR SINE MIR 67 146 -79 2053 143 0 0 chr1 62400410 62400710 -219792954 + AluSx SINE Alu 1 300 -12 279 253 11 59 chr1 62400710 62400727 -219792937 + MIR SINE MIR 146 162 -63 1140 146 40 40 chr1 62400921 62401195 -219792469 + AluJo SINE Alu 1 274 -38 386 259 78 0 chr1 62401634 62401750 -219791914 - MER69A DNA AcHobo -52 125 1 384 295 124 21 chr1 62401943 62402136 -219791528 - MIR SINE MIR -3 259 47 264 277 12 0 chr1 62402200 62402283 -219791381 + (TGAA)n Simple_repeat Simple_repeat 2 85 0 304 311 6 0 chr1 62402304 62402485 -219791179 + CT-rich Low_complexity Low_complexity 1 182 0 284 342 18 18 chr1 62603033 62603147 -219590517 + L2 LINE L2 3123 3236 -36 619 284 134 35 chr1 62603163 62603612 -219590052 - L2 LINE L2 -18 3295 2892 2595 106 6 0 chr1 62603612 62603962 -219589702 - THE1A LTR MaLR -3 352 1 12153 92 5 2 chr1 62603962 62605537 -219588127 - THE1A-int LTR MaLR 0 1580 1 2808 82 3 0 chr1 62605537 62605891 -219587773 - THE1A LTR MaLR 0 355 1 619 284 134 35 chr1 62605891 62606037 -219587627 - L2 LINE L2 -420 2893 2566 204 266 190 0 chr1 62606214 62606293 -219587371 - L2 LINE L2 -1039 2275 2182 856 279 226 9 chr1 62606294 62606861 -219586803 - L2 LINE L2 -1305 2009 1320 398 271 68 15 chr1 62606919 62607052 -219586612 + MIR SINE MIR 93 232 -30 623 297 181 18 chr1 62607080 62607632 -219586032 - L2 LINE L2 -1995 1319 678 2276 132 43 52 chr1 62607720 62607903 -219585761 - MER7C DNA MER2_type -2477 551 368 2516 53 0 0 chr1 62607903 62608206 -219585458 + AluY SINE Alu 1 303 -8 2276 132 43 52 chr1 62608206 62608468 -219585196 - MER7C DNA MER2_type -2660 368 110 3330 54 0 70 chr1 62608481 62608963 -219584701 - LTR7 LTR ERV1 -2 448 1 2621 95 48 24 chr1 62608963 62609548 -219584116 - HERVH LTR ERV1 0 7713 5600 4024 145 14 6 chr1 62609549 62610206 -219583458 - HERVH LTR ERV1 -2564 5149 4488 2624 117 0 5 chr1 62610208 62610609 -219583055 - HERVH LTR ERV1 -3720 3993 3595 15792 101 24 13 chr1 62610709 62613655 -219580009 - HERVH LTR ERV1 -4447 3266 1 3615 60 0 7 chr1 62613667 62614118 -219579546 - LTR7 LTR ERV1 -2 448 1 657 169 0 42 chr1 62614118 62614236 -219579428 - MER7C DNA MER2_type -489 113 1 310 262 221 22 chr1 62614238 62614505 -219579159 - L2 LINE L2 -2794 520 201 2213 106 6 0 chr1 62615363 62615674 -219577990 + AluSp SINE Alu 1 313 0 396 301 65 42 chr1 62615694 62615910 -219577754 - L2 LINE L2 -50 3263 3043 288 330 11 0 chr1 62616109 62616200 -219577464 + MER5A DNA MER1_type 96 187 -2 210 286 78 39 chr1 62616228 62616382 -219577282 + L2 LINE L2 2899 3058 -214 472 256 37 28 chr1 62616691 62616918 -219576746 + MIR3 SINE MIR 10 238 -24 204 135 0 0 chr1 62617614 62617651 -219576013 + (GA)n Simple_repeat Simple_repeat 1 37 0 1467 153 0 9 chr1 62617715 62617943 -219575721 + AluSx SINE Alu 55 280 -32 180 0 0 0 chr1 62617945 62617965 -219575699 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 265 248 95 19 chr1 62618438 62618543 -219575121 - L3 LINE CR1 -2 1575 1463 1975 119 0 23 chr1 62618616 62618919 -219574745 + AluSx SINE Alu 1 296 -16 195 100 0 0 chr1 62619073 62619103 -219574561 + (TA)n Simple_repeat Simple_repeat 2 31 0 496 292 161 21 chr1 62619265 62619508 -219574156 - MLT1L LTR MaLR -221 394 118 553 291 25 25 chr1 62619647 62619843 -219573821 - L2 LINE L2 0 3313 3118 462 276 97 123 chr1 62619898 62620092 -219573572 - L1ME LINE L1 -297 5824 5626 756 194 8 0 chr1 62620092 62620243 -219573421 + FLAM_A SINE Alu 1 152 0 462 276 97 123 chr1 62620243 62620501 -219573163 - L1ME LINE L1 -495 5626 5381 258 95 0 0 chr1 62620572 62620614 -219573050 + (TC)n Simple_repeat Simple_repeat 1 42 0 379 352 129 19 chr1 62620768 62621186 -219572478 + L2 LINE L2 2809 3272 0 192 329 173 12 chr1 62621715 62621994 -219571670 + L2 LINE L2 2717 3049 -223 233 284 220 0 chr1 62622048 62622157 -219571507 + MER5B DNA MER1_type 22 154 -24 818 293 32 4 chr1 62622326 62622575 -219571089 - MIR SINE MIR 0 262 7 235 319 98 47 chr1 62622663 62623130 -219570534 - L2 LINE L2 -52 3220 2723 384 234 81 48 chr1 62623312 62623367 -219570297 + MIR SINE MIR 92 144 -118 2111 131 3 0 chr1 62623367 62623679 -219569985 + AluSq SINE Alu 1 313 0 384 234 81 48 chr1 62623679 62623747 -219569917 + MIR SINE MIR 144 219 -43 528 261 28 57 chr1 62624246 62624457 -219569207 - MIR SINE MIR -41 221 17 206 293 129 29 chr1 62624588 62624728 -219568936 - MIR3 SINE MIR -48 160 7 1317 175 30 19 chr1 62625072 62625341 -219568323 + MER90 LTR ERV1 343 614 0 230 299 0 0 chr1 62625406 62625473 -219568191 - MIR SINE MIR -68 140 74 294 333 45 0 chr1 62625482 62625593 -219568071 + MER94 DNA DNA 19 134 0 369 270 18 36 chr1 62626653 62626764 -219566900 + L2 LINE L2 3146 3254 -18 1876 143 3 0 chr1 62626778 62627071 -219566593 - AluJb SINE Alu -18 294 1 293 294 60 92 chr1 62627413 62627695 -219565969 - L2 LINE L2 -118 3154 2882 2069 102 7 0 chr1 62628134 62628419 -219565245 - AluSx SINE Alu -23 289 3 263 301 89 24 chr1 62628598 62628721 -219564943 - L1MC/D LINE L1 -1945 5863 5733 333 215 21 21 chr1 62629248 62629341 -219564323 - L1MC/D LINE L1 -435 5686 5594 620 329 115 26 chr1 62629357 62629863 -219563801 + L1MC4a LINE L1 4799 5370 -776 1271 268 62 8 chr1 62629934 62630318 -219563346 + MLT1I LTR MaLR 2 406 -3 541 288 41 25 chr1 62630360 62630603 -219563061 + L1MC4a LINE L1 5602 5848 -1960 1069 258 147 25 chr1 62630791 62631240 -219562424 - MLT1D LTR MaLR 0 505 2 237 108 0 0 chr1 62633791 62633828 -219559836 + (CTG)n Simple_repeat Simple_repeat 1 37 0 189 242 61 0 chr1 62634027 62634093 -219559571 + MIR3 SINE MIR 109 178 -30 410 192 88 24 chr1 62634890 62635015 -219558649 + MIR SINE MIR 34 166 -96 322 383 69 0 chr1 62635321 62635496 -219558168 + L3 LINE CR1 1364 1550 -27 250 338 56 14 chr1 62635572 62635714 -219557950 - MIR3 SINE MIR -49 159 12 2145 94 0 50 chr1 62635866 62636184 -219557480 - AluSq SINE Alu -11 302 1 748 267 165 3 chr1 62636184 62636469 -219557195 + MER46C DNA MER2_type 5 335 -3 2734 144 21 14 chr1 62636689 62637118 -219556546 + MSTB1 LTR MaLR 1 432 0 541 315 8 18 chr1 62637225 62637413 -219556251 - MIR SINE MIR -69 193 5 384 262 163 24 chr1 62638059 62638270 -219555394 - MIR SINE MIR -4 258 26 219 200 14 114 chr1 62638669 62638739 -219554925 - MIR SINE MIR -108 100 38 262 240 280 10 chr1 62638906 62639006 -219554658 - L2 LINE L2 -10 3262 3136 497 219 67 13 chr1 62639192 62639375 -219554289 + MIR SINE MIR 29 229 -33 666 257 151 32 chr1 62639387 62639621 -219554043 - LTR33 LTR ERVL -85 436 231 2003 68 36 74 chr1 62639621 62639930 -219553734 - AluSx SINE Alu -15 297 1 666 257 151 32 chr1 62639930 62640073 -219553591 - LTR33 LTR ERVL -290 231 14 264 250 34 23 chr1 62641182 62641270 -219552394 - L2 LINE L2 -903 2411 2323 340 285 42 57 chr1 62641323 62641516 -219552148 + MIR SINE MIR 23 212 -50 917 237 169 23 chr1 62641946 62642329 -219551335 - MLT1C LTR MaLR -4 463 22 556 304 44 0 chr1 62642583 62642764 -219550900 + MIR SINE MIR 16 204 -58 502 330 76 61 chr1 62642832 62643226 -219550438 - L2 LINE L2 -7 3265 2866 635 213 140 62 chr1 62644694 62645004 -219548660 + MLT1C LTR MaLR 1 336 -131 500 315 56 30 chr1 62645257 62645562 -219548102 + LTR16B LTR ERVL 152 464 0 477 310 37 11 chr1 62645924 62646111 -219547553 + MIR SINE MIR 35 226 -36 210 189 75 0 chr1 62647372 62647425 -219546239 - MIR SINE MIR -71 137 81 183 308 19 0 chr1 62647955 62648007 -219545657 + L2 LINE L2 3199 3251 -21 2249 96 3 0 chr1 62648019 62648320 -219545344 + AluSx SINE Alu 1 302 -10 2339 76 0 0 chr1 62648641 62648942 -219544722 + AluY SINE Alu 1 301 -10 293 205 250 0 chr1 62649284 62649396 -219544268 + MIR SINE MIR 103 242 -20 2005 193 67 5 chr1 62649444 62649833 -219543831 - MLT2D LTR ERVL 0 414 2 223 128 64 0 chr1 62650134 62650181 -219543483 + (CGGG)n Simple_repeat Simple_repeat 4 53 0 257 333 114 23 chr1 62650902 62651034 -219542630 + L2 LINE L2 3085 3228 -85 223 261 90 18 chr1 62651050 62651161 -219542503 - L2 LINE L2 -168 3104 2986 453 273 119 4 chr1 62651506 62651733 -219541931 - L2 LINE L2 -39 3233 2981 234 156 0 0 chr1 62651830 62651875 -219541789 + (TG)n Simple_repeat Simple_repeat 1 45 0 321 26 0 0 chr1 62652579 62652617 -219541047 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 298 70 0 chr1 62653178 62653292 -219540372 + L3 LINE CR1 1372 1493 -84 345 272 68 14 chr1 62653658 62653805 -219539859 + MIR SINE MIR 29 183 -79 334 194 28 3 chr1 62653904 62653991 -219539673 + MIR SINE MIR 30 116 -92 271 338 81 14 chr1 62654709 62654857 -219538807 - MIR SINE MIR -34 228 71 398 229 57 9 chr1 62655037 62655142 -219538522 - MIR SINE MIR -80 128 19 834 160 0 0 chr1 62655761 62655886 -219537778 - FLAM_C SINE Alu -18 125 1 308 246 141 26 chr1 62656285 62656476 -219537188 - L2 LINE L2 -23 3290 3078 1371 185 26 23 chr1 62659183 62659448 -219534216 + AluJb SINE Alu 5 270 -42 1172 137 0 11 chr1 62663607 62663797 -219529867 + AluSg/x SINE Alu 122 309 -3 283 248 65 14 chr1 62664909 62665062 -219528602 + MIR SINE MIR 85 250 -12 202 250 21 0 chr1 62665157 62665205 -219528459 + L2 LINE L2 3253 3301 -12 1745 115 14 11 chr1 62666862 62667141 -219526523 + L1MB3 LINE L1 5904 6183 0 291 253 58 35 chr1 62667241 62667328 -219526336 + MIR SINE MIR 155 243 -19 192 111 0 0 chr1 62668003 62668039 -219525625 + (A)n Simple_repeat Simple_repeat 1 36 0 1839 163 3 3 chr1 62668247 62668587 -219525077 + AluJb SINE Alu 1 312 0 378 0 0 0 chr1 62669521 62669563 -219524101 + (CAA)n Simple_repeat Simple_repeat 3 44 0 1548 185 39 11 chr1 62669580 62669866 -219523798 + AluJo SINE Alu 1 294 -18 213 335 128 17 chr1 62670441 62670620 -219523044 + L2 LINE L2 2503 2701 -613 243 309 125 24 chr1 62670866 62671034 -219522630 + L2 LINE L2 3087 3271 -1 22 56 0 0 chr1 62671035 62671071 -219522593 + AT_rich Low_complexity Low_complexity 1 36 0 417 304 33 33 chr1 62671228 62671412 -219522252 + MIR3 SINE MIR 22 205 -3 201 188 62 0 chr1 62671806 62671854 -219521810 - MIR SINE MIR -147 115 65 22 0 0 0 chr1 62672162 62672184 -219521480 + AT_rich Low_complexity Low_complexity 1 22 0 230 128 0 64 chr1 62672662 62672709 -219520955 + Charlie4 DNA MER1_type 1 44 -1917 217 225 8 50 chr1 62673721 62673841 -219519823 + (CA)n Simple_repeat Simple_repeat 1 115 0 480 239 74 55 chr1 62674313 62674476 -219519188 + MIR SINE MIR 46 211 -51 515 262 74 20 chr1 62676093 62676295 -219517369 + MIR SINE MIR 48 260 -2 1423 181 7 53 chr1 62676432 62676714 -219516950 + AluJb SINE Alu 36 304 -8 633 249 60 70 chr1 62680266 62680663 -219513001 + L1MC5 LINE L1 7397 7789 -172 195 324 143 0 chr1 62681545 62681650 -219512014 - L2 LINE L2 -12 3301 3182 747 304 66 12 chr1 62681689 62682079 -219511585 - L2 LINE L2 -246 3067 2659 355 294 91 51 chr1 62682244 62682594 -219511070 - L2 LINE L2 -1622 1692 1329 2156 91 25 3 chr1 62682808 62683093 -219510571 - AluSc SINE Alu -18 291 1 204 290 14 0 chr1 62684607 62684676 -219508988 - L2 LINE L2 0 3313 3244 1996 142 3 10 chr1 62684690 62684986 -219508678 + AluSx SINE Alu 1 294 -18 1604 178 116 3 chr1 62685039 62685342 -219508322 + MER1B DNA MER1_type 1 337 0 341 119 107 24 chr1 62688075 62688159 -219505505 + L1MA6 LINE L1 6210 6300 0 632 235 170 7 chr1 62688159 62688448 -219505216 + Charlie7 DNA MER1_type 2015 2350 -262 189 0 0 0 chr1 62688587 62688608 -219505056 + (A)n Simple_repeat Simple_repeat 1 21 0 1876 150 0 23 chr1 62688610 62688916 -219504748 + AluJo SINE Alu 3 301 -11 26 0 0 0 chr1 62690186 62690212 -219503452 + AT_rich Low_complexity Low_complexity 1 26 0 24 77 0 0 chr1 62690305 62690357 -219503307 + AT_rich Low_complexity Low_complexity 1 52 0 2128 144 0 3 chr1 62693166 62693479 -219500185 + AluSx SINE Alu 1 312 0 2398 84 3 0 chr1 62694106 62694403 -219499261 + AluSp SINE Alu 1 298 -15 391 230 58 43 chr1 62695858 62695997 -219497667 - L2 LINE L2 -6 3307 3167 198 394 29 10 chr1 62696802 62696906 -219496758 + L2 LINE L2 2923 3028 -244 375 339 54 72 chr1 62697010 62697396 -219496268 + L2 LINE L2 2886 3264 -8 245 202 0 101 chr1 62699821 62699910 -219493754 - MIR SINE MIR 0 262 183 2348 107 0 0 chr1 62701449 62701758 -219491906 + AluSg SINE Alu 1 309 -1 328 328 52 0 chr1 62701834 62701950 -219491714 - L2 LINE L2 -7 3265 3144 1989 110 41 0 chr1 62702878 62703168 -219490496 - AluSx SINE Alu -10 302 1 294 263 67 39 chr1 62704425 62704641 -219489023 - L2 LINE L2 0 3313 3037 355 286 38 45 chr1 62704646 62704779 -219488885 + MIR SINE MIR 11 142 -120 189 290 57 40 chr1 62704891 62705015 -219488649 + MIR SINE MIR 137 262 0 492 217 22 14 chr1 62705949 62706087 -219487577 + L1MB3 LINE L1 2888 3026 -3120 6545 86 12 1 chr1 62706089 62707020 -219486644 - L1PA7 LINE L1 -2919 3227 2287 * 9871 0 100 97 chr1 62707011 62707620 -219486044 + L1PA7 LINE L1 3223 3829 -2325 9871 82 26 16 chr1 62707620 62709126 -219484538 + L1PA7 LINE L1 3960 5500 -654 2461 17 76 0 chr1 62709126 62709414 -219484250 + AluYa5 SINE Alu 1 310 -1 9871 82 26 16 chr1 62709414 62710075 -219483589 + L1PA7 LINE L1 5500 6153 -1 8377 187 60 29 chr1 62710077 62711344 -219482320 + L1MB3 LINE L1 3012 4238 -1945 * 2853 6 0 25 chr1 62711344 62711669 -219481995 + AluYb8 SINE Alu 1 317 -1 8377 187 60 29 chr1 62711669 62713488 -219480176 + L1MB3 LINE L1 4238 6183 0 326 247 31 48 chr1 62713525 62713752 -219479912 - L1M4 LINE L1 -802 5344 5122 261 173 0 0 chr1 62713761 62713813 -219479851 + L1MB3 LINE L1 6017 6068 -115 254 391 68 0 chr1 62715536 62715669 -219477995 + L2 LINE L2 3116 3257 -15 2136 254 161 23 chr1 62715879 62716926 -219476738 - L2 LINE L2 -1 3312 2110 196 286 43 29 chr1 62717119 62717189 -219476475 + L2 LINE L2 3237 3307 -6 358 215 186 45 chr1 62717716 62717893 -219475771 + L1ME3 LINE L1 5940 6141 -21 276 195 24 61 chr1 62718165 62718247 -219475417 - L1ME3A LINE L1 0 6170 6092 980 251 95 44 chr1 62719827 62720465 -219473199 + L2 LINE L2 2622 3276 -37 6281 36 0 3 chr1 62720964 62721717 -219471947 - L1PA3 LINE L1 0 6155 5405 1624 201 3 16 chr1 62722613 62722916 -219470748 - AluJb SINE Alu -10 302 4 186 339 110 25 chr1 62722926 62723044 -219470620 + L2 LINE L2 3148 3275 -38 189 194 0 0 chr1 62723876 62723907 -219469757 - L2 LINE L2 -18 3295 3265 261 246 144 110 chr1 62723917 62724035 -219469629 - MIR SINE MIR -121 141 20 358 286 91 55 chr1 62724116 62724336 -219469328 + MIR SINE MIR 33 260 -2 1004 185 11 0 chr1 62726074 62726252 -219467412 + MLT1A1 LTR MaLR 183 362 -3 497 261 23 15 chr1 62727317 62727447 -219466217 + MIR3 SINE MIR 59 189 -19 1901 140 20 0 chr1 62727538 62727831 -219465833 - AluJo SINE Alu -13 299 1 25 65 0 0 chr1 62729020 62729066 -219464598 + AT_rich Low_complexity Low_complexity 1 46 0 728 148 0 9 chr1 62729066 62729181 -219464483 - FLAM_C SINE Alu -27 116 3 2011 107 38 0 chr1 62729223 62729513 -219464151 + MER46B DNA MER2_type 1 176 -60 2458 262 142 33 chr1 62729814 62731318 -219462346 - L2 LINE L2 0 3313 1660 22 35 0 0 chr1 62731649 62731678 -219461986 + AT_rich Low_complexity Low_complexity 1 29 0 515 223 16 16 chr1 62731843 62731964 -219461700 - L2 LINE L2 0 3313 3193 644 280 43 58 chr1 62732028 62732357 -219461307 + L2 LINE L2 2856 3179 -134 395 183 14 0 chr1 62732732 62732803 -219460861 + FLAM_A SINE Alu 2 73 -59 203 114 57 0 chr1 62733132 62733167 -219460497 + CT-rich Low_complexity Low_complexity 4 40 0 24 0 0 0 chr1 62734033 62734057 -219459607 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr1 62734953 62734999 -219458665 + AT_rich Low_complexity Low_complexity 1 46 0 1047 180 32 23 chr1 62735659 62735876 -219457788 - MER20 DNA MER1_type 0 219 1 23 33 0 0 chr1 62736556 62736586 -219457078 + AT_rich Low_complexity Low_complexity 1 30 0 4120 169 50 27 chr1 62738203 62738551 -219455113 + L1MB7 LINE L1 5080 5419 -765 2165 109 3 3 chr1 62738551 62738853 -219454811 + AluSx SINE Alu 1 302 -10 4120 169 50 27 chr1 62738853 62739565 -219454099 + L1MB7 LINE L1 5419 6165 -19 283 258 142 8 chr1 62740247 62740367 -219453297 - MIR SINE MIR -7 255 120 260 263 40 0 chr1 62741388 62741464 -219452200 - L1MD2 LINE L1 -264 6095 6017 26 30 0 0 chr1 62741905 62741938 -219451726 + AT_rich Low_complexity Low_complexity 1 33 0 275 285 44 57 chr1 62743487 62743645 -219450019 + HsTC2 DNA Tc2 1 156 -1742 584 333 23 7 chr1 62743858 62744164 -219449500 + HsTC2 DNA Tc2 566 876 -1022 21 36 0 0 chr1 62744534 62744562 -219449102 + AT_rich Low_complexity Low_complexity 1 28 0 708 328 168 6 chr1 62744817 62745168 -219448496 - L3 LINE CR1 -16 1561 1154 188 226 132 38 chr1 62745388 62745441 -219448223 - L2 LINE L2 -12 3260 3203 23 33 0 0 chr1 62747519 62747549 -219446115 + AT_rich Low_complexity Low_complexity 1 30 0 437 218 91 55 chr1 62749498 62749663 -219444001 + LTR50 LTR ERVL 17 187 -608 402 254 14 36 chr1 62749827 62749965 -219443699 + LTR33A LTR ERVL 389 523 0 667 324 139 22 chr1 62749981 62750469 -219443195 - L2 LINE L2 -845 2469 1925 26 30 0 0 chr1 62750499 62750532 -219443132 + AT_rich Low_complexity Low_complexity 1 33 0 227 108 27 0 chr1 62750568 62750605 -219443059 + MIR SINE MIR 56 93 -115 21 0 0 0 chr1 62750608 62750629 -219443035 + AT_rich Low_complexity Low_complexity 1 21 0 2313 102 0 3 chr1 62751448 62751752 -219441912 + AluSx SINE Alu 1 303 -9 253 289 40 0 chr1 62752172 62752248 -219441416 + MLT1K LTR MaLR 510 588 0 492 228 41 32 chr1 62754330 62754453 -219439211 - MIR SINE MIR -74 188 65 26 50 0 0 chr1 62754734 62754774 -219438890 + AT_rich Low_complexity Low_complexity 1 40 0 2387 103 0 0 chr1 62754989 62755299 -219438365 + AluSg SINE Alu 1 310 0 21 0 0 0 chr1 62755487 62755508 -219438156 + AT_rich Low_complexity Low_complexity 1 21 0 188 338 26 0 chr1 62755773 62755850 -219437814 - MIR SINE MIR -72 190 112 22 0 0 0 chr1 62755850 62755872 -219437792 + AT_rich Low_complexity Low_complexity 1 22 0 325 335 24 18 chr1 62756265 62756432 -219437232 + L1 LINE L1 4482 4649 -1497 732 298 114 40 chr1 62756498 62757606 -219436058 + L1MC4a LINE L1 4428 5176 -970 1186 219 17 13 chr1 62757606 62757844 -219435820 - MER8 DNA MER2_type 0 239 1 732 298 114 40 chr1 62757844 62758085 -219435579 + L1MC4a LINE L1 5176 5398 -748 1596 84 0 0 chr1 62759907 62760122 -219433542 - L1MA1 LINE L1 -4 6298 6084 36 0 0 0 chr1 62760125 62760161 -219433503 + AT_rich Low_complexity Low_complexity 1 36 0 1381 290 180 39 chr1 62760955 62762200 -219431464 - L2 LINE L2 -47 3266 1840 1525 293 78 33 chr1 62762263 62763678 -219429986 + L1MEd LINE L1 72 1588 -4722 433 291 91 14 chr1 62763950 62764160 -219429504 - L2 LINE L2 -1529 1785 1560 219 229 60 48 chr1 62764253 62764336 -219429328 - MIR SINE MIR -6 256 173 634 202 125 6 chr1 62764369 62764537 -219429127 + MIR SINE MIR 2 189 -73 223 298 119 0 chr1 62764761 62764796 -219428868 + L2 LINE L2 3169 3198 -74 230 195 0 0 chr1 62764796 62764837 -219428827 + MIR SINE MIR 210 250 -12 534 293 24 12 chr1 62766726 62766890 -219426774 + MIR SINE MIR 47 212 -50 390 202 48 16 chr1 62767066 62767190 -219426474 + HsTC2 DNA Tc2 1630 1757 -141 660 159 14 35 chr1 62768681 62768826 -219424838 - FLAM_C SINE Alu -1 142 1 28 0 0 0 chr1 62769004 62769032 -219424632 + AT_rich Low_complexity Low_complexity 1 28 0 2210 114 0 3 chr1 62769116 62769422 -219424242 - AluSg SINE Alu -5 305 1 321 245 61 20 chr1 62769534 62769632 -219424032 - L2 LINE L2 -2 3270 3169 22 35 0 0 chr1 62770029 62770058 -219423606 + AT_rich Low_complexity Low_complexity 1 29 0 1730 138 56 0 chr1 62770735 62771031 -219422633 + AluJb SINE Alu 26 336 0 190 245 170 0 chr1 62771111 62771164 -219422500 + L2 LINE L2 3252 3313 0 263 224 0 35 chr1 62771274 62771332 -219422332 + L2 LINE L2 3207 3262 -10 186 291 36 0 chr1 62771474 62771529 -219422135 + MIR SINE MIR 184 240 -22 312 362 57 7 chr1 62771679 62771820 -219421844 - MIR3 SINE MIR -19 189 42 2293 52 3 28 chr1 62772283 62772627 -219421037 + AluY SINE Alu 1 337 0 814 137 0 0 chr1 62772639 62772795 -219420869 + FLAM_C SINE Alu 1 156 0 1472 291 79 66 chr1 62772845 62773935 -219419729 + L2 LINE L2 1731 2834 -480 971 248 159 27 chr1 62774008 62774511 -219419153 + MLT1G3 LTR MaLR 13 506 -24 545 293 111 12 chr1 62774572 62774825 -219418839 + L2 LINE L2 3036 3313 0 1552 138 70 94 chr1 62775659 62775942 -219417722 + MLT1B LTR MaLR 1 274 -116 2410 78 0 10 chr1 62775942 62776248 -219417416 - AluSc SINE Alu -6 303 1 1552 138 70 94 chr1 62776248 62776347 -219417317 + MLT1B LTR MaLR 274 374 -16 1221 203 146 104 chr1 62776479 62776615 -219417049 + L1MC4 LINE L1 7387 7516 -526 2114 120 0 13 chr1 62776615 62776914 -219416750 - AluSx SINE Alu -17 295 1 1221 203 146 104 chr1 62776914 62777344 -219416320 + L1MC4 LINE L1 7516 7977 -65 844 227 111 14 chr1 62777352 62777808 -219415856 + L1MB7 LINE L1 2156 2656 -3726 9171 190 77 70 chr1 62777815 62777965 -219415699 + L1MB7 LINE L1 2507 2655 -3765 1915 162 0 3 chr1 62777965 62778255 -219415409 - AluJb SINE Alu -23 289 1 9171 190 77 70 chr1 62778255 62778852 -219414812 + L1MB7 LINE L1 2655 3247 -3173 1525 192 24 7 chr1 62778852 62779139 -219414525 - AluJo SINE Alu -8 304 13 9171 190 77 70 chr1 62779139 62779457 -219414207 + L1MB7 LINE L1 3247 3561 -2859 1697 177 3 29 chr1 62779457 62779767 -219413897 - AluJb SINE Alu -10 302 1 9171 190 77 70 chr1 62779767 62780134 -219413530 + L1MB7 LINE L1 3561 3924 -2496 3757 162 29 7 chr1 62780134 62780850 -219412814 + L1MB3 LINE L1 5450 6181 -2 9171 190 77 70 chr1 62780850 62782575 -219411089 + L1MB7 LINE L1 3924 5688 -732 2406 88 0 16 chr1 62782575 62782893 -219410771 + AluSq SINE Alu 1 313 0 9171 190 77 70 chr1 62782893 62783629 -219410035 + L1MB7 LINE L1 5688 6418 -2 24 0 0 51 chr1 62783766 62783789 -219409875 + AT_rich Low_complexity Low_complexity 1 23 -14 2304 107 10 0 chr1 62783789 62784098 -219409566 + AluSx SINE Alu 1 312 0 24 0 0 51 chr1 62784098 62784113 -219409551 + AT_rich Low_complexity Low_complexity 23 37 0 275 289 111 0 chr1 62784543 62784633 -219409031 - L2 LINE L2 -4 3268 3169 30 27 0 0 chr1 62784896 62784933 -219408731 + AT_rich Low_complexity Low_complexity 1 37 0 2292 93 0 3 chr1 62785395 62785695 -219407969 - AluSg SINE Alu -11 299 1 604 212 29 15 chr1 62786875 62787012 -219406652 - MER2 DNA MER2_type -25 320 182 1281 90 0 120 chr1 62787044 62787277 -219406387 - MER2 DNA MER2_type -140 205 1 336 229 37 117 chr1 62787576 62787764 -219405900 - MIR SINE MIR -6 256 84 256 290 18 3 chr1 62788166 62788253 -219405411 + MIR SINE MIR 45 132 -76 897 192 6 6 chr1 62788361 62788528 -219405136 + AluJb SINE Alu 137 303 -9 183 129 0 0 chr1 62788563 62788594 -219405070 + (TC)n Simple_repeat Simple_repeat 2 32 0 181 266 18 97 chr1 62788977 62789090 -219404574 + L2 LINE L2 2716 2819 -495 268 290 129 0 chr1 62789181 62789274 -219404390 + L2 LINE L2 2944 3048 -224 2132 151 11 0 chr1 62789505 62789869 -219403795 + L1MB2 LINE L1 5804 6171 0 896 211 62 5 chr1 62789980 62790189 -219403475 + L2 LINE L2 1928 2148 -1166 610 244 72 32 chr1 62790230 62790451 -219403213 - MER106A DNA MER1_type 0 236 7 747 228 36 10 chr1 62790451 62790644 -219403020 + L2 LINE L2 2193 2390 -924 356 283 34 8 chr1 62790644 62790835 -219402829 + L2 LINE L2 2731 2966 -348 393 290 0 0 chr1 62790873 62790966 -219402698 + MER58 DNA MER1_type 182 274 -2146 1044 239 79 56 chr1 62791007 62791362 -219402302 + L2 LINE L2 2951 3313 0 297 308 83 25 chr1 62791588 62791708 -219401956 - L3 LINE CR1 -50 1527 1401 29 28 0 0 chr1 62792017 62792053 -219401611 + AT_rich Low_complexity Low_complexity 1 36 0 787 173 0 0 chr1 62792053 62792180 -219401484 - FLAM_C SINE Alu -6 127 1 229 274 137 14 chr1 62792307 62792380 -219401284 + MIR3 SINE MIR 14 95 -113 670 165 222 34 chr1 62792381 62792557 -219401107 - MER20 DNA MER1_type 0 219 11 255 284 63 11 chr1 62792563 62792658 -219401006 + MIR3 SINE MIR 103 202 -6 2178 133 3 0 chr1 62792909 62793217 -219400447 + AluSx SINE Alu 4 312 0 966 235 101 31 chr1 62793217 62793487 -219400177 + L1MC4 LINE L1 7629 7879 -163 279 0 0 0 chr1 62793487 62793518 -219400146 + (TG)n Simple_repeat Simple_repeat 1 31 0 219 36 0 0 chr1 62793517 62793545 -219400119 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 966 235 101 31 chr1 62793518 62793661 -219400003 + L1MC4 LINE L1 7879 8042 0 2056 114 18 75 chr1 62793684 62794070 -219399594 - THE1B LTR MaLR 0 364 1 2348 92 10 0 chr1 62795218 62795522 -219398142 + AluSg SINE Alu 1 307 -3 2319 109 0 0 chr1 62796293 62796597 -219397067 - AluSx SINE Alu -8 304 1 1416 131 66 0 chr1 62796839 62797083 -219396581 + Tigger7 DNA MER2_type 2223 2482 -5 391 281 0 42 chr1 62798594 62798690 -219394974 + L2 LINE L2 3174 3265 -7 268 279 64 57 chr1 62799850 62799990 -219393674 - MIR3 SINE MIR -48 160 20 194 286 13 26 chr1 62800231 62800308 -219393356 - L2 LINE L2 -218 3054 2979 1492 178 44 27 chr1 62800774 62801067 -219392597 + AluJb SINE Alu 1 298 -14 1155 209 179 17 chr1 62801346 62801642 -219392022 - MER2 DNA MER2_type 0 344 1 230 103 0 51 chr1 62802091 62802130 -219391534 + L1MC3 LINE L1 6431 6467 -1318 2238 121 0 3 chr1 62802234 62802541 -219391123 + AluSx SINE Alu 1 306 -6 2312 102 0 0 chr1 62802545 62802850 -219390814 + AluSg SINE Alu 2 306 -4 360 345 146 12 chr1 62805075 62805240 -219388424 + L3b LINE CR1 1373 1559 -24 202 140 474 0 chr1 62805499 62805556 -219388108 + MIR3 SINE MIR 74 157 -51 403 305 40 20 chr1 62805924 62806075 -219387589 + MIR3 SINE MIR 19 172 -36 245 236 42 42 chr1 62806248 62806320 -219387344 + MIR SINE MIR 8 79 -183 210 259 52 0 chr1 62806375 62806433 -219387231 + L2 LINE L2 3241 3301 -12 201 121 0 0 chr1 62808752 62808785 -219384879 + (CCG)n Simple_repeat Simple_repeat 2 34 0 26 50 0 0 chr1 62808785 62808825 -219384839 + GC_rich Low_complexity Low_complexity 1 40 0 180 77 0 0 chr1 62809235 62809261 -219384403 + (TCC)n Simple_repeat Simple_repeat 1 26 0 1194 108 102 0 chr1 62810330 62810506 -219383158 + MER30 DNA MER1_type 1 194 -36 47 53 0 0 chr1 62811257 62811332 -219382332 + AT_rich Low_complexity Low_complexity 1 75 0 411 329 47 88 chr1 62812079 62812465 -219381199 - L2 LINE L2 -23 3249 2880 283 128 170 0 chr1 62812490 62812537 -219381127 + Tigger4(Zombi) DNA MER2_type 3 57 -2674 912 109 0 36 chr1 62812559 62812697 -219380967 - AluJb SINE Alu -179 133 1 2211 123 7 0 chr1 62812708 62813008 -219380656 - AluSx SINE Alu -10 302 1 472 239 22 0 chr1 62813009 62813101 -219380563 + Tigger4(Zombi) DNA MER2_type 45 138 -2593 * 2380 115 14 11 chr1 62813094 62813433 -219380231 + Tigger4(Zombi) DNA MER2_type 2205 2547 -184 553 103 13 0 chr1 62813433 62813511 -219380153 - MADE1 DNA Mariner 0 80 2 2380 115 14 11 chr1 62813511 62813528 -219380136 + Tigger4(Zombi) DNA MER2_type 2547 2562 -169 2063 136 3 3 chr1 62813528 62813823 -219379841 + AluSq SINE Alu 1 295 -18 939 138 14 0 chr1 62813823 62813968 -219379696 + AluSg/x SINE Alu 132 278 -32 240 35 0 0 chr1 62813968 62813997 -219379667 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 956 140 0 100 chr1 62813999 62814036 -219379628 + Tigger4(Zombi) DNA MER2_type 2552 2591 -140 2137 88 3 21 chr1 62814036 62814319 -219379345 + AluSc SINE Alu 1 278 -31 186 43 0 0 chr1 62814322 62814345 -219379319 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 956 140 0 100 chr1 62814345 62814503 -219379161 + Tigger4(Zombi) DNA MER2_type 2593 2731 0 458 384 9 0 chr1 62814504 62814733 -219378931 - L2 LINE L2 -461 2853 2623 593 296 74 36 chr1 62814818 62815068 -219378596 - L1ME LINE L1 -4951 2187 1948 1636 142 11 35 chr1 62815068 62815350 -219378314 - AluJo SINE Alu -5 307 33 593 296 74 36 chr1 62815350 62815441 -219378223 - L1ME LINE L1 -5190 1948 1862 2487 84 0 0 chr1 62815441 62815750 -219377914 - AluY SINE Alu -2 309 1 593 296 74 36 chr1 62815750 62816043 -219377621 - L1ME LINE L1 -5276 1862 1348 1548 103 138 0 chr1 62817960 62818192 -219375472 + AluSg SINE Alu 36 299 -11 315 266 195 22 chr1 62818309 62818466 -219375198 - MLT1H LTR MaLR 0 555 369 887 216 23 6 chr1 62818689 62818860 -219374804 + FAM SINE Alu 1 174 -1 348 284 13 10 chr1 62819115 62819276 -219374388 - L1ME LINE L1 -5867 1080 919 207 0 0 0 chr1 62819787 62819810 -219373854 + (A)n Simple_repeat Simple_repeat 1 23 0 3587 142 61 20 chr1 62819877 62820532 -219373132 - L1MB7 LINE L1 -9 6175 5494 2224 109 3 0 chr1 62820556 62820849 -219372815 - AluSp SINE Alu -17 296 3 1001 113 0 0 chr1 62820861 62820994 -219372670 - AluSq/x SINE Alu -179 133 1 2672 209 26 36 chr1 62821016 62821710 -219371954 - L1MB7 LINE L1 -1721 4425 3739 2398 90 0 0 chr1 62821722 62822023 -219371641 + AluY SINE Alu 1 301 -10 28 0 0 0 chr1 62822052 62822080 -219371584 + AT_rich Low_complexity Low_complexity 1 28 0 2173 118 0 0 chr1 62822093 62822381 -219371283 - AluSc SINE Alu -21 288 1 2228 98 0 20 chr1 62822383 62822689 -219370975 - AluSx SINE Alu -12 300 1 208 343 60 48 chr1 62823120 62823286 -219370378 - L2 LINE L2 -480 2834 2667 2095 103 3 17 chr1 62823790 62824082 -219369582 - AluSq SINE Alu -25 288 1 24 0 0 0 chr1 62825000 62825024 -219368640 + AT_rich Low_complexity Low_complexity 1 24 0 384 281 41 8 chr1 62825639 62825760 -219367904 - MIR3 SINE MIR -22 186 62 222 203 85 0 chr1 62826190 62826249 -219367415 - MIR SINE MIR -71 191 128 304 216 27 14 chr1 62826259 62826333 -219367331 - MLT1K LTR MaLR -22 566 492 3828 112 57 24 chr1 62826591 62827205 -219366459 - MER41B LTR ERV1 0 635 2 333 286 0 26 chr1 62827297 62827393 -219366271 - MIR SINE MIR -111 97 5 230 333 0 0 chr1 62828039 62828108 -219365556 + MIR SINE MIR 163 231 -31 2082 121 3 23 chr1 62828250 62828555 -219365109 + AluSx SINE Alu 1 299 -13 1579 186 63 48 chr1 62828941 62829019 -219364645 - MER63B DNA MER1_type -657 405 330 2278 85 7 0 chr1 62829019 62829312 -219364352 + AluSx SINE Alu 1 295 -17 1579 186 63 48 chr1 62829312 62829632 -219364032 - MER63B DNA MER1_type -732 330 1 275 260 13 0 chr1 62830078 62830155 -219363509 + (TA)n Simple_repeat Simple_repeat 2 79 0 426 300 25 19 chr1 62830155 62830315 -219363349 + L2 LINE L2 3146 3306 -7 753 199 0 22 chr1 62830915 62831051 -219362613 - FLAM_C SINE Alu 0 133 1 1450 148 124 32 chr1 62831058 62831341 -219362323 - AluSg SINE Alu -1 309 1 24 0 0 0 chr1 62831592 62831616 -219362048 + AT_rich Low_complexity Low_complexity 1 24 0 2286 100 3 0 chr1 62831746 62832047 -219361617 + AluSq SINE Alu 1 302 -11 240 339 39 16 chr1 62832170 62832297 -219361367 + L3b LINE CR1 1283 1412 -171 21 71 0 0 chr1 62832302 62832344 -219361320 + AT_rich Low_complexity Low_complexity 1 42 0 1930 142 0 64 chr1 62832669 62832999 -219360665 + AluJo SINE Alu 3 311 -1 2141 104 31 0 chr1 62833128 62833416 -219360248 - AluSg1 SINE Alu -12 297 1 441 190 20 50 chr1 62833902 62834002 -219359662 - MER5A DNA MER1_type -83 106 10 1313 0 7 0 chr1 62834092 62834233 -219359431 - AluY SINE Alu -169 142 1 281 252 70 148 chr1 62834235 62834431 -219359233 + L2 LINE L2 2357 2512 -802 2163 85 53 0 chr1 62834431 62834712 -219358952 - AluSx SINE Alu -16 296 1 281 252 70 148 chr1 62834712 62834888 -219358776 + L2 LINE L2 2512 2700 -614 2993 218 44 26 chr1 62834888 62835699 -219357965 + L1MD2 LINE L1 3685 4510 -1636 2672 190 30 61 chr1 62835686 62835827 -219357837 + L1MD2 LINE L1 5471 5615 -744 * 2174 117 3 0 chr1 62835827 62836127 -219357537 + AluSq SINE Alu 1 301 -12 2672 190 30 61 chr1 62836127 62836362 -219357302 + L1MD2 LINE L1 5615 5821 -538 1539 180 85 0 chr1 62836362 62836634 -219357030 - AluJb SINE Alu -16 296 2 2672 190 30 61 chr1 62836634 62836899 -219356765 + L1MD2 LINE L1 5821 6093 -266 824 118 103 7 chr1 62836999 62837135 -219356529 - AluSg1 SINE Alu -160 149 1 441 190 20 50 chr1 62837621 62837721 -219355943 - MER5A DNA MER1_type -83 106 10 669 228 17 33 chr1 62838642 62838822 -219354842 - MER3 DNA MER1_type -1 208 32 559 236 147 134 chr1 62839086 62839256 -219354408 + L2 LINE L2 2148 2314 -1000 2881 10 0 0 chr1 62839256 62839567 -219354097 - AluY SINE Alu 0 311 1 559 236 147 134 chr1 62839567 62839765 -219353899 + L2 LINE L2 2314 2528 -786 2163 85 53 0 chr1 62839765 62840046 -219353618 - AluSx SINE Alu -16 296 1 559 236 147 134 chr1 62840046 62840222 -219353442 + L2 LINE L2 2528 2700 -614 2993 218 44 26 chr1 62840222 62841033 -219352631 + L1MD2 LINE L1 3685 4510 -1636 * 3553 195 55 47 chr1 62841020 62841161 -219352503 + L1MD2 LINE L1 5471 5609 -750 2156 117 3 0 chr1 62841161 62841459 -219352205 + AluSq SINE Alu 1 299 -14 3553 195 55 47 chr1 62841459 62841694 -219351970 + L1MD2 LINE L1 5609 5841 -518 1539 180 85 0 chr1 62841694 62841966 -219351698 - AluJb SINE Alu -16 296 2 3553 195 55 47 chr1 62841966 62842270 -219351394 + L1MD2 LINE L1 5841 6163 -196 378 0 0 0 chr1 62842270 62842312 -219351352 + (CA)n Simple_repeat Simple_repeat 2 43 0 3553 195 55 47 chr1 62842312 62842501 -219351163 + L1MD2 LINE L1 6163 6349 -10 628 292 158 39 chr1 62842501 62843005 -219350659 + L2 LINE L2 2703 3274 -39 202 211 0 0 chr1 62843025 62843063 -219350601 + (CA)n Simple_repeat Simple_repeat 2 39 0 2168 117 0 17 chr1 62844124 62844423 -219349241 - AluSx SINE Alu -18 294 1 342 0 0 0 chr1 62844612 62844650 -219349014 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chr1 62844649 62844677 -219348987 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1303 184 74 25 chr1 62845020 62845303 -219348361 - AluJo SINE Alu -15 297 1 544 253 58 42 chr1 62845568 62846008 -219347656 - LTR33 LTR ERVL 0 521 44 348 270 73 39 chr1 62846889 62847067 -219346597 + L2 LINE L2 2629 2812 -502 1720 319 83 38 chr1 62847364 62848842 -219344822 + L2 LINE L2 1710 3249 -23 274 252 168 0 chr1 62849087 62849194 -219344470 + MIR3 SINE MIR 33 157 -51 821 256 47 94 chr1 62849200 62849668 -219343996 - LTR67 LTR ERVL -6 551 106 491 287 38 38 chr1 62850576 62850785 -219342879 - MARNA DNA Mariner -13 573 365 487 313 77 5 chr1 62850857 62851052 -219342612 + MIR SINE MIR 3 211 -51 1957 150 7 3 chr1 62851100 62851406 -219342258 - AluJb SINE Alu -5 307 1 350 296 0 37 chr1 62851580 62851688 -219341976 - MIR SINE MIR -138 124 21 409 331 117 4 chr1 62851992 62852240 -219341424 + L2 LINE L2 2694 2969 -345 975 112 0 8 chr1 62852853 62852987 -219340677 + AluJo SINE Alu 2 134 -178 570 297 42 21 chr1 62853012 62853204 -219340460 - MIR SINE MIR -10 252 57 302 313 32 81 chr1 62853455 62853514 -219340150 + MIR SINE MIR 21 81 -181 2175 94 3 17 chr1 62853514 62853825 -219339839 - AluSx SINE Alu 0 307 1 302 313 32 81 chr1 62853825 62854010 -219339654 + MIR SINE MIR 81 254 -8 2277 104 0 0 chr1 62854176 62854465 -219339199 - AluSx SINE Alu -18 294 6 1595 224 34 0 chr1 62854499 62854793 -219338871 + Tigger5 DNA MER2_type 1 304 -2019 1169 114 11 0 chr1 62854801 62854985 -219338679 + Tigger5 DNA MER2_type 2112 2297 -26 257 316 110 15 chr1 62855111 62855247 -219338417 - MIR SINE MIR -54 208 60 238 240 0 0 chr1 62855294 62855344 -219338320 + L1ME LINE L1 5620 5669 -452 1669 151 29 14 chr1 62855861 62856163 -219337501 - AluSx SINE Alu 0 306 1 2124 123 7 3 chr1 62856376 62856676 -219336988 - AluSq SINE Alu -12 301 1 324 241 170 9 chr1 62856677 62856789 -219336875 + MIR SINE MIR 47 176 -86 22 0 0 0 chr1 62857863 62857885 -219335779 + AT_rich Low_complexity Low_complexity 1 22 0 1279 122 31 48 chr1 62857905 62858134 -219335530 + AluSg/x SINE Alu 86 310 0 488 264 19 0 chr1 62858464 62858570 -219335094 - MER81 DNA DNA 0 114 7 728 203 20 41 chr1 62858829 62859026 -219334638 - MIR SINE MIR 0 262 70 238 321 73 0 chr1 62859034 62859143 -219334521 + L1ME LINE L1 5673 5789 -332 310 315 94 64 chr1 62859613 62860065 -219333599 - L2 LINE L2 -23 3249 2774 2117 129 0 3 chr1 62860065 62860360 -219333304 + AluSx SINE Alu 1 294 -18 310 315 94 64 chr1 62860360 62860542 -219333122 - L2 LINE L2 -498 2774 2599 188 237 51 17 chr1 62860570 62860629 -219333035 + MIR SINE MIR 90 150 -58 255 103 0 0 chr1 62861571 62861610 -219332054 + (GA)n Simple_repeat Simple_repeat 2 40 0 608 164 27 18 chr1 62861709 62861819 -219331845 - MER81 DNA DNA -3 111 1 291 290 130 0 chr1 62862027 62862127 -219331537 + MIR3 SINE MIR 87 199 -9 2217 92 11 0 chr1 62862448 62862732 -219330932 + AluSq SINE Alu 1 287 -26 1060 208 71 91 chr1 62862866 62863185 -219330479 - LTR16A1 LTR ERVL 0 457 146 1940 121 7 0 chr1 62863185 62863457 -219330207 - AluSx SINE Alu -8 304 31 1060 208 71 91 chr1 62863457 62863545 -219330119 - LTR16A1 LTR ERVL -311 146 58 495 321 50 66 chr1 62863821 62864234 -219329430 + L1ME LINE L1 5262 5672 -449 330 306 126 31 chr1 62864256 62864478 -219329186 - MIR SINE MIR -17 245 3 220 392 0 0 chr1 62864824 62864898 -219328766 + L2 LINE L2 3126 3199 -73 1108 248 16 13 chr1 62865026 62865299 -219328365 - L1M3 LINE L1 -415 5753 5474 2071 105 20 27 chr1 62865403 62865562 -219328102 - AluSp SINE Alu -19 294 135 206 61 0 30 chr1 62865562 62865595 -219328069 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2147 98 0 0 chr1 62865595 62865872 -219327792 - AluSc SINE Alu -32 277 1 2071 105 20 27 chr1 62865872 62866007 -219327657 - AluSp SINE Alu -176 137 1 8926 213 60 53 chr1 62866007 62868277 -219325387 - L1MDa LINE L1 -717 5919 3665 2307 109 7 0 chr1 62868277 62868581 -219325083 - AluSg SINE Alu -4 306 1 8926 213 60 53 chr1 62868581 62868855 -219324809 - L1MDa LINE L1 -2971 3665 3394 1346 128 243 8 chr1 62868855 62869098 -219324566 - AluSg SINE Alu 0 300 1 8926 213 60 53 chr1 62869098 62869755 -219323909 - L1MDa LINE L1 -3242 3394 2743 1470 153 91 36 chr1 62869755 62870029 -219323635 - AluJo SINE Alu -23 289 1 8926 213 60 53 chr1 62870029 62870135 -219323529 - L1MDa LINE L1 -3893 2743 2639 1916 168 0 0 chr1 62870135 62870426 -219323238 - AluSx SINE Alu -21 291 1 8926 213 60 53 chr1 62870426 62870723 -219322941 - L1MDa LINE L1 -3997 2639 2284 2046 117 0 0 chr1 62870736 62871000 -219322664 - AluSx SINE Alu -23 289 26 1518 141 12 12 chr1 62871000 62871231 -219322433 + MLT1A1 LTR MaLR 129 362 -3 372 207 26 98 chr1 62871231 62871424 -219322240 - L1MDa LINE L1 -5048 1492 1314 * 1072 180 0 94 chr1 62871419 62871458 -219322206 - L1MC1 LINE L1 -5 6328 6287 2330 90 10 3 chr1 62871458 62871758 -219321906 + AluSp SINE Alu 1 302 -11 1072 180 0 94 chr1 62871758 62871962 -219321702 - L1MC1 LINE L1 -46 6287 6108 * 5662 184 57 59 chr1 62871960 62872846 -219320818 - L1MDa LINE L1 -5200 1340 455 510 17 0 0 chr1 62872846 62872905 -219320759 + (TG)n Simple_repeat Simple_repeat 2 60 0 5662 184 57 59 chr1 62872905 62873342 -219320322 - L1MDa LINE L1 -6085 455 19 2397 155 25 11 chr1 62873386 62873825 -219319839 + L1MC1 LINE L1 5888 6332 -1 201 284 15 15 chr1 62874066 62874133 -219319531 + MIR3 SINE MIR 108 174 -34 339 247 0 14 chr1 62874836 62874909 -219318755 + MER112 DNA MER1_type 2 73 -187 324 176 162 70 chr1 62874967 62875109 -219318555 - MER112 DNA MER1_type -89 171 17 325 215 21 32 chr1 62875170 62875263 -219318401 - MER103 DNA DNA -52 114 23 183 250 19 0 chr1 62875514 62875566 -219318098 - MIR SINE MIR -98 110 58 655 221 47 0 chr1 62876104 62876276 -219317388 + LTR33 LTR ERVL 35 214 -307 315 217 75 38 chr1 62876395 62876501 -219317163 + LTR33 LTR ERVL 411 520 -1 326 168 84 27 chr1 62876665 62876779 -219316885 - MER5B DNA MER1_type -35 143 36 261 146 0 0 chr1 62876862 62876910 -219316754 + (TG)n Simple_repeat Simple_repeat 1 48 0 688 206 26 26 chr1 62877799 62877954 -219315710 - FRAM SINE Alu -23 153 1 2208 91 7 7 chr1 62878077 62878375 -219315289 - AluSq SINE Alu -15 298 1 444 232 48 24 chr1 62878456 62878581 -219315083 - L2 LINE L2 -4 3309 3182 1789 117 48 31 chr1 62878749 62879040 -219314624 - AluSq SINE Alu -17 296 1 14040 113 46 75 chr1 62879110 62881090 -219312574 + Tigger1 DNA MER2_type 20 2002 -416 476 200 0 0 chr1 62881090 62881175 -219312489 - FLAM_A SINE Alu -57 85 1 14040 113 46 75 chr1 62881175 62881581 -219312083 + Tigger1 DNA MER2_type 2002 2418 0 273 269 115 10 chr1 62881697 62881812 -219311852 + MIR SINE MIR 2 130 -78 230 173 115 0 chr1 62881937 62881989 -219311675 + MIR SINE MIR 205 262 0 450 324 69 0 chr1 62882413 62882617 -219311047 + MIR SINE MIR 1 218 -44 197 297 139 30 chr1 62882853 62882954 -219310710 + MIR SINE MIR 40 151 -57 676 285 11 11 chr1 62883136 62883322 -219310342 - MIR SINE MIR -8 254 69 1237 109 113 8 chr1 62883524 62883790 -219309874 + AluSx SINE Alu 1 294 -18 1453 121 0 0 chr1 62883938 62884128 -219309536 + AluSq SINE Alu 110 299 -14 1753 153 11 11 chr1 62884228 62884502 -219309162 - AluJo SINE Alu -24 288 15 189 0 0 0 chr1 62884618 62884639 -219309025 + (T)n Simple_repeat Simple_repeat 1 21 0 2162 169 59 53 chr1 62884869 62885343 -219308321 + MLT1D LTR MaLR 1 477 -28 267 328 33 8 chr1 62885393 62885515 -219308149 - MIR SINE MIR -61 147 23 471 201 190 63 chr1 62885576 62885750 -219307914 + MER117 DNA MER1_type 1 196 -1 388 287 10 0 chr1 62885750 62885851 -219307813 - MIR3 SINE MIR -47 161 60 235 342 75 6 chr1 62886955 62887116 -219306548 - MIR SINE MIR -50 212 41 376 255 143 25 chr1 62887360 62887521 -219306143 - MIR SINE MIR -30 232 53 213 290 28 37 chr1 62888470 62888577 -219305087 - MIR SINE MIR -46 216 111 805 196 0 0 chr1 62888688 62888826 -219304838 - FRAM SINE Alu -39 137 1 506 223 141 0 chr1 62889090 62889211 -219304453 + LTR33 LTR ERVL 370 507 -14 304 125 21 0 chr1 62889908 62889956 -219303708 - MLT2C2 LTR ERVL 0 414 366 247 188 14 14 chr1 62890018 62890087 -219303577 + (TA)n Simple_repeat Simple_repeat 2 70 0 2223 178 19 22 chr1 62890119 62890536 -219303128 - MLT2C2 LTR ERVL -48 416 1 446 267 0 37 chr1 62890555 62890690 -219302974 + MLT1H LTR MaLR 45 174 -375 584 212 36 22 chr1 62890795 62890932 -219302732 + MLT1G LTR MaLR 450 588 -2 195 260 0 20 chr1 62891363 62891413 -219302251 - L2 LINE L2 -220 3052 3004 2037 124 38 0 chr1 62891468 62891758 -219301906 - AluSq SINE Alu -12 301 1 392 256 76 43 chr1 62892179 62892390 -219301274 + MIR SINE MIR 26 243 -19 1802 161 17 7 chr1 62892596 62892887 -219300777 - AluJo SINE Alu -16 296 3 385 369 28 0 chr1 62892889 62893065 -219300599 + MIR SINE MIR 48 228 -34 17243 67 3 1 chr1 62893463 62895706 -219297958 + L1PA6 LINE L1 3012 5257 -889 5730 51 55 5 chr1 62895710 62896451 -219297213 + L1PA6 LINE L1 5377 6154 0 2565 78 0 14 chr1 62896451 62896788 -219296876 + L1PA6 LINE L1 5814 6154 0 474 286 23 23 chr1 62897286 62897457 -219296207 + MLT1J1 LTR MaLR 1 171 -275 310 244 250 24 chr1 62897468 62897595 -219296069 + MLT1J2 LTR MaLR 204 301 -149 2038 144 0 0 chr1 62897595 62897907 -219295757 - AluSx SINE Alu 0 312 1 310 244 250 24 chr1 62897907 62897947 -219295717 + MLT1J2 LTR MaLR 301 409 -41 506 340 72 30 chr1 62898522 62898922 -219294742 - L2 LINE L2 -744 2570 2154 380 326 14 35 chr1 62900018 62900162 -219293502 - L2 LINE L2 -5 3308 3168 462 268 16 8 chr1 62900593 62900716 -219292948 - MIR SINE MIR -66 142 19 670 264 101 18 chr1 62901261 62901488 -219292176 - MIR SINE MIR 0 262 17 1005 301 65 55 chr1 62901599 62902167 -219291497 - MLT1K LTR MaLR 0 588 15 383 210 49 0 chr1 62902429 62902510 -219291154 + MIR SINE MIR 107 191 -71 907 287 68 22 chr1 62902785 62903140 -219290524 - LTR33 LTR ERVL -20 501 131 955 248 33 0 chr1 62903558 62903768 -219289896 + MIR SINE MIR 40 256 -6 420 311 22 7 chr1 62903788 62903923 -219289741 + MIR3 SINE MIR 18 154 -54 393 335 209 11 chr1 62904536 62904885 -219288779 + L2 LINE L2 2812 3229 -43 653 315 72 63 chr1 62905057 62905501 -219288163 + L2 LINE L2 2825 3272 0 971 308 83 20 chr1 62905620 62906126 -219287538 + MLT1L LTR MaLR 74 611 -4 247 313 0 0 chr1 62906137 62906201 -219287463 + MIR SINE MIR 84 147 -115 2075 139 42 33 chr1 62906551 62906911 -219286753 + THE1B LTR MaLR 2 364 0 455 284 118 35 chr1 62906945 62907273 -219286391 - L1MC4a LINE L1 -238 5883 5580 286 224 174 20 chr1 62907483 62907581 -219286083 - MIR SINE MIR -66 142 30 224 59 29 0 chr1 62907737 62907771 -219285893 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 206 344 121 25 chr1 62907838 62908236 -219285428 + L3 LINE CR1 1031 1466 -111 * 377 252 131 59 chr1 62908204 62908426 -219285238 + L2 LINE L2 2720 2957 -357 425 277 59 0 chr1 62908503 62908622 -219285042 - MIR SINE MIR -11 251 126 1408 247 66 10 chr1 62908626 62909018 -219284646 - LTR16A LTR ERVL -4 446 33 269 273 10 71 chr1 62909049 62909148 -219284516 - MIR SINE MIR -135 127 35 243 250 77 0 chr1 62909164 62909216 -219284448 + MIR SINE MIR 207 262 0 * 368 324 9 9 chr1 62909215 62909323 -219284341 - MIR SINE MIR -105 157 50 250 277 223 0 chr1 62909344 62909438 -219284226 + L2 LINE L2 3195 3309 -4 21 0 0 0 chr1 62909445 62909466 -219284198 + AT_rich Low_complexity Low_complexity 1 21 0 500 274 52 20 chr1 62909532 62909685 -219283979 - MIR3 SINE MIR -35 173 16 388 236 0 47 chr1 62909728 62909834 -219283830 - MER5A DNA MER1_type -85 104 4 755 222 77 36 chr1 62910181 62910402 -219283262 + MIR SINE MIR 33 262 0 264 300 20 0 chr1 62910560 62910660 -219283004 + L2 LINE L2 2435 2536 -778 270 309 134 13 chr1 62910765 62910914 -219282750 - MIR SINE MIR -92 170 4 488 299 96 62 chr1 62911196 62911388 -219282276 + L2 LINE L2 2499 2710 -604 2194 96 3 0 chr1 62911388 62911690 -219281974 - AluSx SINE Alu -9 303 1 488 299 96 62 chr1 62911690 62911852 -219281812 + L2 LINE L2 2710 2865 -449 361 315 99 47 chr1 62912320 62912552 -219281112 + MIR SINE MIR 13 256 -6 195 235 20 20 chr1 62912556 62912607 -219281057 + MIR SINE MIR 125 175 -87 219 304 0 0 chr1 62913133 62913189 -219280475 + (TG)n Simple_repeat Simple_repeat 2 57 0 277 277 80 44 chr1 62913242 62913379 -219280285 - L2 LINE L2 -5 3267 3126 291 330 65 32 chr1 62913473 62913658 -219280006 - MIR3 SINE MIR -12 196 6 477 228 184 0 chr1 62913813 62913927 -219279737 + L2 LINE L2 3179 3313 0 2295 109 44 22 chr1 62914096 62914463 -219279201 - THE1C LTR MaLR 0 375 1 380 271 16 23 chr1 62914869 62914998 -219278666 + MIR SINE MIR 110 237 -25 1737 175 23 10 chr1 62915052 62915360 -219278304 - MLT1B LTR MaLR -1 389 78 754 222 11 53 chr1 62915357 62915546 -219278118 - MER58A DNA MER1_type -40 184 4 * 288 300 71 6 chr1 62915696 62915837 -219277827 + MIR SINE MIR 23 171 -69 2179 98 3 0 chr1 62915876 62916172 -219277492 - AluSx SINE Alu -15 297 1 216 158 0 0 chr1 62916733 62916771 -219276893 + (TG)n Simple_repeat Simple_repeat 1 38 0 411 248 159 0 chr1 62916874 62917019 -219276645 - MIR SINE MIR -21 241 74 699 241 114 18 chr1 62917350 62917578 -219276086 - MIR SINE MIR -12 250 1 196 228 239 22 chr1 62917578 62917656 -219276008 + L2 LINE L2 3121 3218 -95 216 333 94 17 chr1 62917665 62917782 -219275882 + MIR SINE MIR 17 142 -66 266 315 48 32 chr1 62918558 62918686 -219274978 + MIR SINE MIR 30 157 -51 184 309 36 0 chr1 62919729 62919784 -219273880 + MIR SINE MIR 2 58 -204 460 361 20 24 chr1 62920283 62920532 -219273132 - MIR SINE MIR -13 249 2 237 83 0 0 chr1 62920803 62920839 -219272825 + (TG)n Simple_repeat Simple_repeat 2 37 0 1045 213 22 96 chr1 62921275 62921547 -219272117 + MIR SINE MIR 3 254 -8 1325 183 0 17 chr1 62921919 62922160 -219271504 - AluJo SINE Alu -75 237 1 458 294 71 31 chr1 62922174 62922497 -219271167 - L1MC5 LINE L1 -82 7879 7544 216 186 0 23 chr1 62923014 62923057 -219270607 + GA-rich Low_complexity Low_complexity 1 42 0 283 185 56 0 chr1 62923862 62923916 -219269748 + MARNA DNA Mariner 303 359 -227 748 327 19 12 chr1 62924166 62924352 -219269312 - MIR SINE MIR -1 261 71 1826 118 64 0 chr1 62924352 62924632 -219269032 + AluSg SINE Alu 2 299 -11 748 327 19 12 chr1 62924632 62924702 -219268962 - MIR SINE MIR -191 71 3 244 264 19 0 chr1 62925195 62925248 -219268416 + MLT1I LTR MaLR 233 286 -123 362 160 39 143 chr1 62925288 62925431 -219268233 + MLT1H LTR MaLR 411 501 -4 2028 131 3 7 chr1 62925604 62925909 -219267755 + AluSx SINE Alu 1 304 -8 243 262 84 28 chr1 62925956 62926063 -219267601 + L1ME LINE L1 5697 5809 -312 684 271 143 33 chr1 62926063 62926392 -219267272 - MLT1J LTR MaLR -4 507 143 334 174 12 12 chr1 62927411 62927497 -219266167 + GA-rich Low_complexity Low_complexity 1 86 0 2257 88 0 0 chr1 62927667 62927962 -219265702 + AluSg SINE Alu 3 297 -13 223 296 96 24 chr1 62927970 62928095 -219265569 + L2 LINE L2 3160 3293 -20 433 153 288 0 chr1 62928416 62928534 -219265130 - MER5A DNA MER1_type -34 155 4 392 273 93 44 chr1 62928548 62928731 -219264933 - MIR SINE MIR -66 196 5 237 175 95 32 chr1 62929109 62929172 -219264492 - MIR SINE MIR -78 184 118 392 271 68 23 chr1 62929295 62929428 -219264236 + MIR SINE MIR 18 156 -106 2599 231 75 3 chr1 62929448 62930037 -219263627 - MER82 DNA MER2_type -9 644 14 439 208 19 138 chr1 62930225 62930384 -219263280 + MIR SINE MIR 87 226 -36 288 153 153 17 chr1 62930388 62930447 -219263217 + MER96 DNA MER1_type? 1 67 -108 1949 118 20 13 chr1 62930480 62930785 -219262879 + AluSq SINE Alu 1 307 -6 209 118 0 0 chr1 62930984 62931018 -219262646 + MIR SINE MIR 110 143 -65 203 214 0 0 chr1 62931068 62931110 -219262554 + MIR SINE MIR 156 197 -65 696 316 42 5 chr1 62931456 62931668 -219261996 - MIR SINE MIR -11 251 32 781 219 10 41 chr1 62931749 62931945 -219261719 + MIR SINE MIR 73 262 0 360 0 0 0 chr1 62932440 62932480 -219261184 + (TG)n Simple_repeat Simple_repeat 1 40 0 197 309 36 45 chr1 62933004 62933114 -219260550 - MIR3 SINE MIR -15 193 85 1118 241 32 35 chr1 62934326 62934732 -219258932 - LTR16B LTR ERVL -2 462 58 459 294 14 20 chr1 62935657 62935803 -219257861 - MIR3 SINE MIR -26 182 38 2308 93 0 0 chr1 62935952 62936253 -219257411 - AluSx SINE Alu -10 302 2 401 300 94 22 chr1 62936329 62936509 -219257155 + MIR SINE MIR 14 206 -56 243 207 171 0 chr1 62936580 62936662 -219257002 + MIR SINE MIR 167 262 0 269 215 60 74 chr1 62936880 62936988 -219256676 - MIR SINE MIR -88 174 65 260 305 70 39 chr1 62937310 62937438 -219256226 - MIR SINE MIR -41 221 90 749 209 5 42 chr1 62937445 62937636 -219256028 - LTR41 LTR ERVL -6 767 584 899 193 28 11 chr1 62937958 62938134 -219255530 - LTR41 LTR ERVL -594 179 1 1978 133 79 17 chr1 62938208 62938561 -219255103 + THE1C LTR MaLR 1 375 0 732 240 83 0 chr1 62938573 62938790 -219254874 + Cheshire DNA MER1_type 161 395 -2025 304 330 46 0 chr1 62938820 62938929 -219254735 + MIR SINE MIR 105 218 -44 335 354 39 39 chr1 62938980 62939158 -219254506 - MIR3 SINE MIR -27 181 4 258 354 46 30 chr1 62939582 62939819 -219253845 + L2 LINE L2 2152 2392 -922 503 320 72 85 chr1 62939857 62940357 -219253307 + L2 LINE L2 2779 3271 -1 450 358 62 29 chr1 62940370 62940756 -219252908 + L2 LINE L2 2457 2855 -459 398 219 0 0 chr1 62940754 62940827 -219252837 + L2 LINE L2 3186 3258 -55 * 829 240 116 88 chr1 62940827 62941268 -219252396 - MLT1H LTR MaLR 0 549 97 278 200 18 0 chr1 62941338 62941393 -219252271 + L2 LINE L2 3254 3309 -4 252 59 0 0 chr1 62942493 62942527 -219251137 + (TG)n Simple_repeat Simple_repeat 2 35 0 2582 96 8 8 chr1 62942590 62942945 -219250719 + THE1A LTR MaLR 1 355 0 12237 82 1 14 chr1 62942945 62944418 -219249246 + THE1A-int LTR MaLR 1 1464 -116 2129 146 0 0 chr1 62944418 62944720 -219248944 - AluSx SINE Alu -10 302 1 12237 82 1 14 chr1 62944720 62944836 -219248828 + THE1A-int LTR MaLR 1464 1580 0 2570 96 8 3 chr1 62944836 62945189 -219248475 + THE1A LTR MaLR 1 355 0 386 304 100 5 chr1 62945558 62945673 -219247991 - MIR SINE MIR -9 253 150 2605 89 19 11 chr1 62945673 62946045 -219247619 - THE1C LTR MaLR 0 375 1 386 304 100 5 chr1 62946045 62946148 -219247516 - MIR SINE MIR -112 150 14 329 348 59 7 chr1 62946142 62946277 -219247387 - MIR3 SINE MIR -61 147 6 * 182 184 0 26 chr1 62946592 62946630 -219247034 - MIR SINE MIR -149 59 23 322 263 44 35 chr1 62946700 62946814 -219246850 - MIR SINE MIR -21 241 127 318 271 51 2 chr1 62946975 62947149 -219246515 - MLT1L LTR MaLR -4 611 389 1601 206 3 0 chr1 62947195 62947482 -219246182 - AluJo SINE Alu -24 288 1 299 246 0 0 chr1 62947603 62947672 -219245992 - MLT1J LTR MaLR -333 178 110 204 125 0 0 chr1 62947698 62947730 -219245934 + (TG)n Simple_repeat Simple_repeat 2 33 0 231 132 53 0 chr1 62947755 62947793 -219245871 - MLT1L LTR MaLR -569 46 7 574 238 50 0 chr1 62949728 62949888 -219243776 - ORSL DNA AcHobo -8 267 100 242 216 108 85 chr1 62949861 62950037 -219243627 - ORSL DNA AcHobo -70 205 26 * 734 221 99 99 chr1 62950663 62951056 -219242608 - MLT1J2 LTR MaLR 0 450 58 357 159 145 0 chr1 62951268 62951337 -219242327 - MER116 DNA Mariner 0 80 2 269 192 20 146 chr1 62951386 62951537 -219242127 - MER103 DNA DNA -14 152 21 211 347 13 0 chr1 62951776 62951851 -219241813 + MIR3 SINE MIR 87 162 -46 390 295 33 8 chr1 62952709 62952831 -219240833 + MIR SINE MIR 26 150 -112 206 225 34 27 chr1 62953031 62953111 -219240553 + MIR SINE MIR 44 128 -80 910 163 0 0 chr1 62953111 62953252 -219240412 + AluSg/x SINE Alu 165 305 -7 257 365 0 10 chr1 62953388 62953492 -219240172 + MIR SINE MIR 20 122 -86 356 264 58 8 chr1 62953604 62953725 -219239939 + L2 LINE L2 3146 3272 0 188 304 128 20 chr1 62954418 62954520 -219239144 - MIR SINE MIR -66 142 30 206 233 55 27 chr1 62954587 62954660 -219239004 + L2 LINE L2 3223 3297 -16 343 375 17 25 chr1 62954705 62954940 -219238724 + MIR SINE MIR 22 254 -8 233 143 0 0 chr1 62955407 62955449 -219238215 - MIR SINE MIR -109 153 112 186 340 0 0 chr1 62955448 62955498 -219238166 - L2 LINE L2 -13 3259 3210 * 274 309 0 0 chr1 62955523 62955604 -219238060 - MIR SINE MIR -68 140 60 2269 117 0 3 chr1 62955630 62955939 -219237725 - AluSg SINE Alu -2 308 1 281 250 25 0 chr1 62956220 62956300 -219237364 - MLT1J LTR MaLR -366 145 64 466 284 8 0 chr1 62956714 62956848 -219236816 + L1MC4a LINE L1 5768 5902 -1906 212 276 26 13 chr1 62957099 62957175 -219236489 + MIR SINE MIR 78 154 -108 22 56 0 0 chr1 62957178 62957214 -219236450 + AT_rich Low_complexity Low_complexity 1 36 0 221 350 115 6 chr1 62957641 62957798 -219235866 - MIR3 SINE MIR -14 194 21 182 61 0 61 chr1 62958120 62958153 -219235511 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 409 289 62 29 chr1 62958269 62958511 -219235153 + MIR SINE MIR 7 256 -6 2002 208 43 9 chr1 62958908 62959350 -219234314 + MLT1C LTR MaLR 1 457 -10 214 254 0 0 chr1 62959485 62959544 -219234120 - MIR SINE MIR -84 124 66 462 289 38 13 chr1 62959766 62959925 -219233739 - MIR SINE MIR -50 212 50 1826 159 0 10 chr1 62959967 62960257 -219233407 - AluSx SINE Alu -9 303 17 1304 273 50 51 chr1 62960289 62960419 -219233245 + L1ME3A LINE L1 5248 5377 -793 1720 191 0 28 chr1 62960419 62960739 -219232925 + AluJb SINE Alu 1 311 -1 1304 273 50 51 chr1 62960739 62960949 -219232715 + L1ME3A LINE L1 5377 5586 -584 1703 175 60 11 chr1 62960949 62961297 -219232367 + MLT1A1 LTR MaLR 1 365 0 1304 273 50 51 chr1 62961297 62961442 -219232222 + L1ME3A LINE L1 5586 5730 -440 732 180 0 8 chr1 62961442 62961570 -219232094 - FLAM_A SINE Alu -5 128 2 1304 273 50 51 chr1 62961570 62961729 -219231935 + L1ME3A LINE L1 5730 5892 -278 406 259 97 23 chr1 62961751 62961967 -219231697 + L1ME3A LINE L1 5731 5962 -208 192 232 98 12 chr1 62962332 62962414 -219231250 - L2 LINE L2 -530 2784 2696 193 247 0 82 chr1 62963032 62963105 -219230559 - MIR SINE MIR -123 85 19 209 197 98 16 chr1 62963480 62963541 -219230123 + L3b LINE CR1 1260 1325 -258 209 262 0 0 chr1 62965433 62965475 -219228189 + (CTG)n Simple_repeat Simple_repeat 3 44 0 452 315 50 25 chr1 62966033 62966274 -219227390 - MIR SINE MIR -14 248 2 1602 216 3 44 chr1 62966368 62966730 -219226934 + MLT1A2 LTR MaLR 28 374 0 338 333 99 0 chr1 62970589 62970751 -219222913 - L3 LINE CR1 -221 1356 1179 334 314 89 0 chr1 62970781 62970905 -219222759 + L3 LINE CR1 955 1089 -488 1984 133 4 0 chr1 62971072 62971374 -219222290 + AluJb SINE Alu 5 307 0 317 318 36 0 chr1 62971599 62971709 -219221955 + MIR3 SINE MIR 61 174 -34 277 307 45 0 chr1 62971740 62971828 -219221836 + MER117 DNA MER1_type 59 150 -47 1997 140 62 36 chr1 62971833 62972189 -219221475 + MSTA LTR MaLR 1 365 -63 329 250 37 74 chr1 62973381 62973489 -219220175 - MLT1K LTR MaLR -326 262 159 399 248 23 98 chr1 62973502 62973635 -219220029 - MLT1K LTR MaLR -367 221 99 213 148 114 102 chr1 62973959 62974047 -219219617 + MIR3 SINE MIR 104 192 -16 275 214 112 10 chr1 62975605 62975703 -219217961 + MIR SINE MIR 70 177 -85 219 229 0 0 chr1 62976222 62976270 -219217394 - L2 LINE L2 -82 3231 3184 387 200 0 0 chr1 62976322 62976387 -219217277 - 7SK RNA RNA -8 185 121 717 151 27 34 chr1 62976406 62976552 -219217112 - 7SK RNA RNA -48 145 1 21 0 0 0 chr1 62976563 62976584 -219217080 + AT_rich Low_complexity Low_complexity 1 21 0 217 257 0 78 chr1 62976654 62976788 -219216876 - L2 LINE L2 -277 3036 2921 583 227 55 6 chr1 62977909 62978072 -219215592 + L1ME4a LINE L1 5951 6121 0 560 297 47 33 chr1 62978977 62979277 -219214387 + L2 LINE L2 2805 3108 -205 731 201 120 11 chr1 62979359 62979543 -219214121 - MER58C DNA MER1_type -1 214 11 229 293 167 17 chr1 62979564 62979738 -219213926 + L2 LINE L2 3103 3302 -11 192 77 0 0 chr1 62979739 62979765 -219213899 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 345 287 111 32 chr1 62979765 62979981 -219213683 + MIR SINE MIR 24 256 -6 194 133 44 0 chr1 62980495 62980540 -219213124 - MIR3 SINE MIR -1 207 161 184 300 77 29 chr1 62980724 62980894 -219212770 + L2 LINE L2 2708 2885 -429 647 261 62 22 chr1 62981041 62981267 -219212397 - MIR SINE MIR -3 259 25 195 349 0 0 chr1 62981889 62981972 -219211692 + L2 LINE L2 2733 2815 -499 594 202 0 0 chr1 62982844 62983017 -219210647 + (TG)n Simple_repeat Simple_repeat 2 174 0 183 216 26 103 chr1 62983051 62983167 -219210497 + L2 LINE L2 2987 3093 -179 2006 163 32 3 chr1 62983503 62983841 -219209823 - MER7A DNA MER2_type 0 346 1 275 301 0 0 chr1 62984101 62984184 -219209480 - MIR SINE MIR -93 115 33 390 216 31 10 chr1 62984832 62984929 -219208735 + MIR SINE MIR 20 118 -144 272 301 10 39 chr1 62985135 62985238 -219208426 + MIR SINE MIR 40 139 -69 396 218 16 8 chr1 62985298 62985422 -219208242 + CT-rich Low_complexity Low_complexity 1 125 0 951 267 104 16 chr1 62985444 62985886 -219207778 - L2 LINE L2 -22 3291 2811 27 29 0 0 chr1 62985927 62985961 -219207703 + AT_rich Low_complexity Low_complexity 1 34 0 223 179 18 36 chr1 62986131 62986187 -219207477 - L2 LINE L2 -570 2744 2690 1372 268 27 87 chr1 62987164 62987212 -219206452 - L1MEc LINE L1 -3941 2455 2406 1446 194 60 54 chr1 62987212 62987281 -219206383 - MLT1B LTR MaLR 0 390 323 2108 103 10 20 chr1 62987281 62987581 -219206083 - AluSx SINE Alu -15 297 1 1446 194 60 54 chr1 62987581 62987897 -219205767 - MLT1B LTR MaLR -67 323 3 1372 268 27 87 chr1 62987897 62988851 -219204813 - L1MEc LINE L1 -3990 2406 1513 1255 184 53 110 chr1 62988866 62989062 -219204602 - Charlie1 DNA MER1_type -127 2634 2428 1710 122 0 4 chr1 62989062 62989299 -219204365 - AluSg/x SINE Alu -5 305 70 1255 184 53 110 chr1 62989299 62989591 -219204073 - Charlie1 DNA MER1_type -333 2428 2174 10540 212 26 37 chr1 62989607 62994213 -219199451 - L1PB3 LINE L1 0 6390 1517 2303 159 8 24 chr1 62994213 62994258 -219199406 + MER47A DNA MER2_type 1 45 -2278 2218 102 0 3 chr1 62994258 62994561 -219199103 - AluY SINE Alu -9 302 1 2303 159 8 24 chr1 62994561 62994885 -219198779 + MER47A DNA MER2_type 45 364 -2 10540 212 26 37 chr1 62994885 62995614 -219198050 - L1PB3 LINE L1 -4873 1517 781 871 201 101 0 chr1 62995805 62995994 -219197670 - MER3 DNA MER1_type 0 209 2 670 310 37 52 chr1 62996228 62996635 -219197029 - L1MEc LINE L1 -5969 427 27 411 312 116 80 chr1 62997019 62997596 -219196068 + L2 LINE L2 2628 3245 -27 1184 254 145 11 chr1 62997609 62998214 -219195450 - L2 LINE L2 0 3313 2616 659 162 0 0 chr1 62998214 62998313 -219195351 + U6 snRNA snRNA 1 99 -8 603 0 0 0 chr1 62998313 62998380 -219195284 + (TA)n Simple_repeat Simple_repeat 2 68 0 333 224 0 0 chr1 62998381 62998457 -219195207 - L2 LINE L2 -685 2629 2554 231 296 71 51 chr1 62998511 62998609 -219195055 + L2 LINE L2 3142 3241 -31 496 247 14 36 chr1 62998708 62998869 -219194795 - MIR SINE MIR -61 147 1 287 301 161 14 chr1 62999380 62999523 -219194141 + MIR3 SINE MIR 38 201 -7 585 204 157 17 chr1 62999630 62999839 -219193825 + MIR SINE MIR 20 254 -8 251 221 0 13 chr1 62999869 62999946 -219193718 + CT-rich Low_complexity Low_complexity 4 79 0 239 244 151 0 chr1 63000052 63000138 -219193526 + L2 LINE L2 3213 3311 -2 195 150 0 25 chr1 63000791 63000831 -219192833 - MIR SINE MIR -108 154 116 597 286 120 63 chr1 63000900 63001267 -219192397 - L2 LINE L2 0 3272 2885 445 232 71 0 chr1 63001280 63001392 -219192272 - MIR SINE MIR -56 206 87 251 319 31 54 chr1 63001750 63002016 -219191648 + L2 LINE L2 3003 3225 -47 255 290 14 0 chr1 63002394 63002463 -219191201 - L2 LINE L2 -3 3269 3200 210 239 65 0 chr1 63002741 63002787 -219190877 - L2 LINE L2 -27 3245 3197 4104 154 62 11 chr1 63003846 63004568 -219189096 - L1MC2 LINE L1 -13 6331 5573 550 209 28 93 chr1 63004568 63004695 -219188969 + MIR SINE MIR 20 154 -108 2775 87 22 11 chr1 63004695 63005064 -219188600 - THE1C LTR MaLR -2 373 1 550 209 28 93 chr1 63005064 63005096 -219188568 + MIR SINE MIR 154 168 -94 2510 124 25 3 chr1 63005096 63005452 -219188212 - THE1B LTR MaLR 0 364 1 550 209 28 93 chr1 63005452 63005473 -219188191 + MIR SINE MIR 168 189 -73 1410 247 39 12 chr1 63005513 63005945 -219187719 + MLT1C LTR MaLR 6 467 0 293 286 101 109 chr1 63005986 63006224 -219187440 + L2 LINE L2 3035 3270 -2 2254 313 70 43 chr1 63007511 63008602 -219185062 + ERVL LTR ERVL 1792 2852 -2912 1225 197 23 9 chr1 63008602 63008820 -219184844 - MER58A DNA MER1_type -3 221 1 2254 313 70 43 chr1 63008820 63008911 -219184753 + ERVL LTR ERVL 2852 2939 -2825 1575 213 44 22 chr1 63008911 63009277 -219184387 - MLT1A2 LTR MaLR 0 374 1 2254 313 70 43 chr1 63009277 63009499 -219184165 + ERVL LTR ERVL 2939 3235 -2529 318 305 59 8 chr1 63009533 63009651 -219184013 - HERV16 LTR ERVL -3820 1176 1053 549 279 25 20 chr1 63009992 63010193 -219183471 - LTR16C LTR ERVL -2 489 288 549 369 43 8 chr1 63010889 63011260 -219182404 + ERVL LTR ERVL 4937 5320 -444 891 139 13 25 chr1 63011333 63011491 -219182173 - L1PA13 LINE L1 0 6163 6008 711 199 73 0 chr1 63011710 63011861 -219181803 + MER93b LTR ERV1 1 162 -211 720 147 0 0 chr1 63011912 63012021 -219181643 + MER93b LTR ERV1 265 373 0 1802 174 40 62 chr1 63012047 63012501 -219181163 - MER31B LTR ERV1 -22 444 1 183 293 0 0 chr1 63013613 63013654 -219180010 - L2 LINE L2 -8 3305 3265 212 347 137 0 chr1 63013747 63013842 -219179822 - L2 LINE L2 -18 3254 3147 480 150 62 0 chr1 63013842 63013922 -219179742 + MSTD LTR MaLR 1 85 -343 262 87 65 0 chr1 63013934 63013980 -219179684 - L1PB1 LINE L1 -9 6142 6094 6416 137 9 4 chr1 63014001 63015668 -219177996 - L1PB1 LINE L1 -36 6115 4442 1231 201 128 17 chr1 63015668 63015966 -219177698 + MSTD LTR MaLR 66 396 0 305 289 18 133 chr1 63016007 63016077 -219177587 - L2 LINE L2 -189 3083 3007 1655 212 0 3 chr1 63016077 63016388 -219177276 - AluJb SINE Alu -2 310 1 305 289 18 133 chr1 63016388 63016535 -219177129 - L2 LINE L2 -265 3007 2891 477 272 33 70 chr1 63016552 63016650 -219177014 - L2 LINE L2 -5 3308 3208 2140 141 113 14 chr1 63016650 63017005 -219176659 - MLT1B LTR MaLR 0 390 1 477 272 33 70 chr1 63017005 63017119 -219176545 - L2 LINE L2 -105 3208 3104 1024 186 6 0 chr1 63017139 63017316 -219176348 + FRAM SINE Alu 1 175 -1 222 381 40 8 chr1 63017321 63017447 -219176217 - L2 LINE L2 -3 3269 3140 359 298 38 23 chr1 63018067 63018198 -219175466 - MER5A DNA MER1_type -1 188 56 276 30 0 0 chr1 63018538 63018571 -219175093 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 88 0 0 chr1 63018673 63018707 -219174957 - L2 LINE L2 -17 3255 3222 702 249 88 10 chr1 63018708 63018893 -219174771 - LTR16C LTR ERVL -11 480 281 396 272 68 0 chr1 63018893 63018996 -219174668 + MER81 DNA DNA 1 110 -4 286 200 12 88 chr1 63019046 63019126 -219174538 - LTR16C LTR ERVL -228 263 190 555 308 22 16 chr1 63019388 63019573 -219174091 + MIR3 SINE MIR 23 208 0 189 0 0 0 chr1 63019774 63019795 -219173869 + (T)n Simple_repeat Simple_repeat 1 21 0 212 189 0 0 chr1 63020182 63020219 -219173445 + (TAA)n Simple_repeat Simple_repeat 2 38 0 207 337 89 50 chr1 63020272 63020373 -219173291 - MIR SINE MIR -148 114 10 556 94 13 56 chr1 63020906 63021022 -219172642 - MER39B LTR ERV1 -543 110 7 326 297 79 21 chr1 63021244 63021354 -219172310 + MIR SINE MIR 7 123 -85 934 260 118 50 chr1 63021758 63022174 -219171490 + MLT1J1 LTR MaLR 3 446 0 332 244 0 13 chr1 63023027 63023105 -219170559 - HsTC2 DNA Tc2 -1819 79 3 3372 196 11 11 chr1 63023610 63024242 -219169422 + MER39 LTR ERV1 75 706 -1 267 308 135 27 chr1 63024248 63024433 -219169231 - MIR SINE MIR -45 217 13 296 244 0 70 chr1 63024438 63024524 -219169140 + L3 LINE CR1 1177 1256 -321 338 253 74 0 chr1 63024648 63024743 -219168921 + MIR SINE MIR 151 252 -10 424 303 34 17 chr1 63024912 63025031 -219168633 - L2 LINE L2 -5 3267 3147 188 111 28 0 chr1 63025488 63025524 -219168140 + C-rich Low_complexity Low_complexity 1 37 0 404 258 67 8 chr1 63025673 63025793 -219167871 + MIR SINE MIR 130 256 -6 406 194 48 19 chr1 63025876 63025979 -219167685 + MIR SINE MIR 114 219 -43 252 331 24 39 chr1 63028136 63028263 -219165401 + L2 LINE L2 2911 3035 -237 451 366 42 52 chr1 63028384 63028690 -219164974 + L2 LINE L2 2951 3253 -19 207 0 0 0 chr1 63028692 63028715 -219164949 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 254 280 67 13 chr1 63028715 63028790 -219164874 + MIR SINE MIR 44 122 -86 303 228 44 79 chr1 63029274 63029388 -219164276 + MIR SINE MIR 34 143 -119 13179 112 6 49 chr1 63029957 63032594 -219161070 + L1PA7 LINE L1 1 2627 -3834 913 115 40 14 chr1 63032594 63032733 -219160931 + L1PA7 LINE L1 3859 4004 -2457 22076 98 10 0 chr1 63032733 63036525 -219157139 + L1PA7 LINE L1 2625 6469 0 22 0 0 0 chr1 63036662 63036684 -219156980 + AT_rich Low_complexity Low_complexity 1 22 0 1019 329 32 30 chr1 63036808 63037373 -219156291 + ERVL LTR ERVL 4676 5241 -523 5164 156 11 5 chr1 63037380 63038241 -219155423 - L1PB4 LINE L1 -9 6147 5282 192 77 0 0 chr1 63038617 63038643 -219155021 + (TAA)n Simple_repeat Simple_repeat 2 27 0 241 307 31 99 chr1 63038648 63038840 -219154824 - MIR SINE MIR -10 252 74 1715 141 0 0 chr1 63039164 63039398 -219154266 - AluSx SINE Alu -20 292 59 753 199 0 22 chr1 63039729 63039865 -219153799 - FLAM_C SINE Alu 0 133 1 1450 148 124 32 chr1 63039872 63040155 -219153509 - AluSg SINE Alu -1 309 1 24 0 0 0 chr1 63040406 63040430 -219153234 + AT_rich Low_complexity Low_complexity 1 24 0 2173 102 3 13 chr1 63040560 63040864 -219152800 + AluSq SINE Alu 1 301 -12 206 118 0 0 chr1 63041069 63041103 -219152561 + MIR SINE MIR 110 143 -65 193 214 0 0 chr1 63041153 63041195 -219152469 + MIR SINE MIR 156 197 -65 644 321 42 5 chr1 63041541 63041753 -219151911 - MIR SINE MIR -11 251 32 773 219 10 41 chr1 63041834 63042030 -219151634 + MIR SINE MIR 73 262 0 342 0 0 0 chr1 63042525 63042563 -219151101 + (TG)n Simple_repeat Simple_repeat 1 38 0 1795 94 4 0 chr1 63092578 63092822 -219100842 + L1PA7 LINE L1 2068 2312 -3834 913 115 40 14 chr1 63092822 63092961 -219100703 + L1PA7 LINE L1 3544 3689 -2457 22050 98 10 0 chr1 63092961 63096753 -219096911 + L1PA7 LINE L1 2310 6154 0 22 0 0 0 chr1 63096890 63096912 -219096752 + AT_rich Low_complexity Low_complexity 1 22 0 1019 329 32 30 chr1 63097036 63097601 -219096063 + ERVL LTR ERVL 4676 5241 -523 5151 157 11 5 chr1 63097608 63098469 -219095195 - L1PB4 LINE L1 -9 6147 5282 192 77 0 0 chr1 63098845 63098871 -219094793 + (TAA)n Simple_repeat Simple_repeat 2 27 0 241 307 31 99 chr1 63098876 63099068 -219094596 - MIR SINE MIR -10 252 74 2143 137 0 0 chr1 63099392 63099684 -219093980 - AluSx SINE Alu -20 292 1 1741 60 23 9 chr1 63099705 63100031 -219093633 + L1P3 LINE L1 5145 5474 -680 386 321 43 29 chr1 63100240 63100520 -219093144 + L1ME4a LINE L1 5502 5785 -336 534 265 47 19 chr1 63100564 63100779 -219092885 + L1ME4a LINE L1 5901 6121 0 23 97 0 0 chr1 63100891 63100963 -219092701 + AT_rich Low_complexity Low_complexity 1 72 0 292 304 35 26 chr1 63100995 63101110 -219092554 - MIR SINE MIR -63 145 30 2209 123 0 0 chr1 63101613 63101922 -219091742 - AluSg1 SINE Alu 0 309 1 362 319 9 17 chr1 63102050 63102166 -219091498 + L2 LINE L2 3155 3269 -3 425 207 0 0 chr1 63102247 63102334 -219091330 + MIR3 SINE MIR 110 196 -12 1611 224 121 13 chr1 63102884 63103385 -219090279 - MER39 LTR ERV1 0 707 1 251 229 29 0 chr1 63103485 63103555 -219090109 + LTR33 LTR ERVL 114 185 -336 590 231 98 30 chr1 63103634 63103837 -219089827 + LTR33 LTR ERVL 305 521 0 1943 216 99 5 chr1 63104066 63104491 -219089173 + MLT1C LTR MaLR 3 467 0 495 330 200 6 chr1 63104531 63104886 -219088778 + L2 LINE L2 2828 3251 -21 275 281 67 0 chr1 63105601 63105690 -219087974 - MIR SINE MIR -73 189 95 290 267 17 0 chr1 63105706 63105766 -219087898 - L2 LINE L2 -8 3264 3204 265 181 12 121 chr1 63105770 63105813 -219087851 - MADE1 DNA Mariner -6 74 43 2252 116 3 0 chr1 63105813 63106114 -219087550 + AluSx SINE Alu 1 302 -10 265 181 12 121 chr1 63106114 63106153 -219087511 - MADE1 DNA Mariner -37 43 1 253 315 36 27 chr1 63106434 63106545 -219087119 + MIR SINE MIR 39 150 -112 190 261 0 58 chr1 63107227 63107296 -219086368 + L2 LINE L2 3189 3253 -19 283 238 214 24 chr1 63107636 63107762 -219085902 + MIR SINE MIR 34 183 -79 1171 198 20 38 chr1 63108212 63108533 -219085131 + MLT1D LTR MaLR 161 505 0 433 208 13 0 chr1 63108923 63109000 -219084664 - Zaphod DNA AcHobo 0 4031 3954 711 199 73 0 chr1 63109320 63109471 -219084193 + MER93b LTR ERV1 1 162 -211 720 147 0 0 chr1 63109522 63109631 -219084033 + MER93b LTR ERV1 265 373 0 1802 174 40 62 chr1 63109657 63110111 -219083553 - MER31B LTR ERV1 -22 444 1 183 293 0 0 chr1 63111221 63111262 -219082402 - L2 LINE L2 -8 3305 3265 212 347 137 0 chr1 63111355 63111450 -219082214 - L2 LINE L2 -18 3254 3147 480 150 62 0 chr1 63111450 63111530 -219082134 + MSTD LTR MaLR 1 85 -343 262 87 65 0 chr1 63111542 63111588 -219082076 - L1PB1 LINE L1 -9 6142 6094 6416 137 9 4 chr1 63111609 63113276 -219080388 - L1PB1 LINE L1 -36 6115 4442 1231 201 128 17 chr1 63113276 63113574 -219080090 + MSTD LTR MaLR 66 396 0 660 230 0 0 chr1 63113685 63113811 -219079853 - AluJb SINE Alu -2 310 185 786 173 0 16 chr1 63113915 63114042 -219079622 - AluJb SINE Alu -186 126 2 306 270 14 115 chr1 63114042 63114190 -219079474 - L2 LINE L2 -249 3023 2891 477 272 33 70 chr1 63114207 63114305 -219079359 - L2 LINE L2 -5 3308 3208 2140 141 113 14 chr1 63114305 63114660 -219079004 - MLT1B LTR MaLR 0 390 1 477 272 33 70 chr1 63114660 63114774 -219078890 - L2 LINE L2 -105 3208 3104 1024 186 6 0 chr1 63114794 63114971 -219078693 + FRAM SINE Alu 1 175 -1 222 381 40 8 chr1 63114976 63115102 -219078562 - L2 LINE L2 -3 3269 3140 359 298 38 23 chr1 63115720 63115851 -219077813 - MER5A DNA MER1_type -1 188 56 276 30 0 0 chr1 63116191 63116224 -219077440 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 88 0 0 chr1 63116326 63116360 -219077304 - L2 LINE L2 -17 3255 3222 253 130 22 22 chr1 63116361 63116407 -219077257 - LTR16C LTR ERVL -11 480 435 509 215 39 144 chr1 63116571 63116696 -219076968 - LTR16C LTR ERVL -73 418 332 413 272 68 0 chr1 63116696 63116799 -219076865 + MER81 DNA DNA 1 110 -4 509 215 39 144 chr1 63116799 63116929 -219076735 - LTR16C LTR ERVL -159 332 190 555 308 22 16 chr1 63117191 63117376 -219076288 + MIR3 SINE MIR 23 208 0 189 0 0 0 chr1 63117577 63117598 -219076066 + (T)n Simple_repeat Simple_repeat 1 21 0 212 189 0 0 chr1 63117985 63118022 -219075642 + (TAA)n Simple_repeat Simple_repeat 2 38 0 207 337 89 50 chr1 63118075 63118176 -219075488 - MIR SINE MIR -148 114 10 556 94 13 56 chr1 63118709 63118825 -219074839 - MER39B LTR ERV1 -543 110 7 326 297 79 21 chr1 63119047 63119157 -219074507 + MIR SINE MIR 7 123 -85 934 260 118 50 chr1 63119561 63119977 -219073687 + MLT1J1 LTR MaLR 3 446 0 332 244 0 13 chr1 63120830 63120908 -219072756 - HsTC2 DNA Tc2 -1819 79 3 3372 196 11 11 chr1 63121413 63122045 -219071619 + MER39 LTR ERV1 75 706 -1 267 308 135 27 chr1 63122051 63122236 -219071428 - MIR SINE MIR -45 217 13 296 244 0 70 chr1 63122241 63122327 -219071337 + L3 LINE CR1 1177 1256 -321 338 253 74 0 chr1 63122451 63122546 -219071118 + MIR SINE MIR 151 252 -10 424 303 34 17 chr1 63122715 63122834 -219070830 - L2 LINE L2 -5 3267 3147 188 111 28 0 chr1 63123291 63123327 -219070337 + C-rich Low_complexity Low_complexity 1 37 0 404 258 67 8 chr1 63123476 63123596 -219070068 + MIR SINE MIR 130 256 -6 406 194 48 19 chr1 63123679 63123782 -219069882 + MIR SINE MIR 114 219 -43 252 331 24 39 chr1 63125939 63126066 -219067598 + L2 LINE L2 2911 3035 -237 451 366 42 52 chr1 63126187 63126493 -219067171 + L2 LINE L2 2951 3253 -19 207 0 0 0 chr1 63126495 63126518 -219067146 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 254 280 67 13 chr1 63126518 63126593 -219067071 + MIR SINE MIR 44 122 -86 303 228 44 79 chr1 63127077 63127191 -219066473 + MIR SINE MIR 34 143 -119 13179 107 4 38 chr1 63127760 63130001 -219063663 + L1P3 LINE L1 1 2230 -4231 227 71 0 0 chr1 63129994 63130022 -219063642 - L1P LINE L1 -4197 1949 1922 * 950 252 133 3 chr1 63130122 63130444 -219063220 - Zaphod DNA AcHobo -75 3956 3593 2022 284 76 51 chr1 63130588 63131383 -219062281 + L1ME1 LINE L1 175 949 -5447 2438 73 0 0 chr1 63131383 63131686 -219061978 - AluY SINE Alu -8 303 1 2022 284 76 51 chr1 63131686 63131797 -219061867 + L1ME1 LINE L1 949 1056 -5340 1350 209 50 80 chr1 63131797 63132018 -219061646 - MLT1B LTR MaLR 0 390 185 2377 104 0 0 chr1 63132018 63132327 -219061337 - AluSx SINE Alu -3 309 1 1350 209 50 80 chr1 63132327 63132507 -219061157 - MLT1B LTR MaLR -205 185 1 2022 284 76 51 chr1 63132507 63132896 -219060768 + L1ME1 LINE L1 1056 1503 -4893 * 2247 228 28 26 chr1 63132887 63133588 -219060076 + L1MD3 LINE L1 7105 7985 0 3437 233 107 10 chr1 63133613 63134764 -219058900 + L1ME1 LINE L1 3564 4825 -1390 1970 160 66 8 chr1 63134764 63135145 -219058519 + MSTA LTR MaLR 1 403 -25 7586 50 0 5 chr1 63135162 63136099 -219057565 - L1PA5 LINE L1 -11 6143 5204 280 125 0 0 chr1 63136099 63136139 -219057525 + MSTA LTR MaLR 389 428 0 3476 213 60 49 chr1 63136139 63136517 -219057147 + L1ME1 LINE L1 4821 5193 -1042 2349 56 0 65 chr1 63136517 63136839 -219056825 + AluY SINE Alu 1 301 -10 3476 213 60 49 chr1 63136839 63137303 -219056361 + L1ME1 LINE L1 5193 5650 -585 3035 174 105 15 chr1 63137303 63137891 -219055773 - LTR9B LTR ERV1 -3 641 1 3476 213 60 49 chr1 63137891 63138453 -219055211 + L1ME1 LINE L1 5650 6231 -4 1504 215 157 58 chr1 63138471 63138878 -219054786 - Zaphod DNA AcHobo -1286 2745 2380 2157 123 0 3 chr1 63138878 63139178 -219054486 - AluSx SINE Alu -13 299 1 1504 215 157 58 chr1 63139178 63139223 -219054441 - Zaphod DNA AcHobo -1651 2380 2341 36 53 0 0 chr1 63139223 63139280 -219054384 + AT_rich Low_complexity Low_complexity 1 57 0 1504 215 157 58 chr1 63139280 63139361 -219054303 - Zaphod DNA AcHobo -1690 2341 2096 17191 49 0 2 chr1 63139374 63142266 -219051398 + L1PA5 LINE L1 3256 6150 -4 642 226 44 22 chr1 63142292 63142473 -219051191 - Zaphod DNA AcHobo -1961 2070 1886 284 94 19 0 chr1 63142502 63142555 -219051109 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 625 168 0 0 chr1 63142568 63142663 -219051001 - AluJ/FLAM SINE Alu -216 96 2 2134 222 124 56 chr1 63142736 63143628 -219050036 - Zaphod DNA AcHobo -2885 1146 194 263 308 23 23 chr1 63144301 63144473 -219049191 + (TCTCTG)n Simple_repeat Simple_repeat 6 177 0 242 283 0 60 chr1 63144396 63144623 -219049041 + T-rich Low_complexity Low_complexity 1 213 0 * 281 326 30 15 chr1 63145179 63145314 -219048350 - L2 LINE L2 -193 3079 2943 477 305 21 103 chr1 63145674 63145985 -219047679 - L2 LINE L2 -4 3268 2992 793 222 62 6 chr1 63145985 63146161 -219047503 + MER5A DNA MER1_type 4 189 0 477 305 21 103 chr1 63146161 63146226 -219047438 - L2 LINE L2 -280 2992 2923 561 259 21 57 chr1 63146464 63146657 -219047007 + MER117 DNA MER1_type 1 186 -11 330 263 191 0 chr1 63147484 63147636 -219046028 + MIR SINE MIR 77 257 -5 205 313 38 46 chr1 63147946 63148077 -219045587 - L2 LINE L2 -495 2819 2690 * 278 339 9 27 chr1 63148073 63148185 -219045479 + L2 LINE L2 3189 3298 -15 192 40 0 0 chr1 63148187 63148212 -219045452 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 299 299 64 13 chr1 63149543 63149700 -219043964 + MIR SINE MIR 49 213 -49 22 0 0 0 chr1 63150494 63150516 -219043148 + AT_rich Low_complexity Low_complexity 1 22 0 2277 103 0 0 chr1 63150516 63150806 -219042858 - AluSq SINE Alu -23 290 1 746 296 18 0 chr1 63151405 63151625 -219042039 - ERVL LTR ERVL -389 5375 5152 * 2150 302 72 33 chr1 63151616 63152679 -219040985 - ERVL LTR ERVL -676 4978 3862 294 151 94 0 chr1 63153335 63153388 -219040276 + MIR SINE MIR 19 76 -186 215 269 48 58 chr1 63153634 63153738 -219039926 + L2 LINE L2 3155 3257 -15 232 292 104 0 chr1 63155946 63156042 -219037622 - MIR SINE MIR -73 189 84 595 237 75 16 chr1 63156130 63156316 -219037348 - MIR SINE MIR -7 255 59 486 306 103 32 chr1 63157342 63157775 -219035889 + L2 LINE L2 2802 3269 -3 214 348 78 34 chr1 63157876 63158171 -219035493 - L2 LINE L2 -249 3023 2715 344 265 143 7 chr1 63158572 63158715 -219034949 - MIR SINE MIR -58 150 25 210 71 0 0 chr1 63158986 63159014 -219034650 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 322 304 65 42 chr1 63159169 63159386 -219034278 - L2 LINE L2 -197 3075 2854 3161 153 50 23 chr1 63159535 63160091 -219033573 + MER34C LTR ERV1 12 582 -3 189 323 53 30 chr1 63160127 63160260 -219033404 - L2 LINE L2 -676 2638 2503 856 167 60 51 chr1 63160279 63160807 -219032857 + LTR8 LTR ERV1 2 460 -267 786 333 113 21 chr1 63160807 63161577 -219032087 - L2 LINE L2 -865 2449 1609 302 377 89 0 chr1 63162036 63162182 -219031482 - L2 LINE L2 -7 3265 3107 197 410 38 0 chr1 63163842 63163947 -219029717 + L2 LINE L2 2943 3051 -221 373 305 84 35 chr1 63164081 63164284 -219029380 - MIR SINE MIR -37 225 13 262 247 41 0 chr1 63164747 63164820 -219028844 + MIR SINE MIR 86 161 -101 754 89 0 0 chr1 63164865 63164966 -219028698 - HY3 scRNA scRNA 0 101 1 441 218 102 27 chr1 63164981 63165128 -219028536 + LTR33 LTR ERVL 43 200 -321 3291 152 12 11 chr1 63165304 63165870 -219027794 - Tigger1 DNA MER2_type -176 2242 1676 275 240 94 88 chr1 63166720 63166912 -219026752 - L1ME4a LINE L1 -2 6119 5927 877 234 109 59 chr1 63167550 63167783 -219025881 + MLT1F1 LTR MaLR 39 259 -331 2255 102 0 3 chr1 63167783 63168077 -219025587 - AluSq SINE Alu -15 298 6 877 234 109 59 chr1 63168077 63168275 -219025389 + MLT1F1 LTR MaLR 259 523 -67 4046 30 0 0 chr1 63168275 63168745 -219024919 + L1PA4 LINE L1 5686 6155 0 877 234 109 59 chr1 63168745 63168817 -219024847 + MLT1F1 LTR MaLR 523 590 0 332 283 144 61 chr1 63169092 63169438 -219024226 - L1ME4a LINE L1 -196 5925 5551 329 234 13 0 chr1 63169451 63169528 -219024136 - L1P4 LINE L1 -697 5469 5392 426 295 26 6 chr1 63169818 63169974 -219023690 + MIR SINE MIR 40 198 -64 1907 115 97 0 chr1 63169975 63170253 -219023411 + AluSq SINE Alu 1 305 -8 213 307 63 24 chr1 63170438 63170565 -219023099 + L2 LINE L2 2626 2757 -557 275 273 51 79 chr1 63170607 63170823 -219022841 + L2 LINE L2 2852 3061 -211 1091 139 65 47 chr1 63170927 63170956 -219022708 - MER20 DNA MER1_type 0 219 192 860 233 11 0 chr1 63170956 63171132 -219022532 - MER45A DNA AcHobo 0 178 1 1091 139 65 47 chr1 63171132 63171317 -219022347 - MER20 DNA MER1_type -27 192 1 2262 159 31 34 chr1 63171348 63171906 -219021758 - MLT2A2 LTR ERVL 0 554 3 547 153 27 18 chr1 63172814 63172925 -219020739 + MIR SINE MIR 70 181 -81 2069 168 25 77 chr1 63173016 63173499 -219020165 - L1PA16 LINE L1 -3 6163 5706 252 0 0 0 chr1 63174046 63174074 -219019590 + (TTA)n Simple_repeat Simple_repeat 3 30 0 22972 32 0 1 chr1 63174074 63177548 -219016116 - L1PA3 LINE L1 -18 6137 2667 459 0 0 0 chr1 63177595 63177646 -219016018 + (CA)n Simple_repeat Simple_repeat 2 52 0 1133 296 113 42 chr1 63177884 63178664 -219015000 - ERVL LTR ERVL -384 5380 4546 1581 316 75 43 chr1 63178808 63179966 -219013698 - ERVL LTR ERVL -1888 3636 2403 2394 88 0 13 chr1 63180405 63180711 -219012953 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 63181024 63181045 -219012619 + AT_rich Low_complexity Low_complexity 1 21 0 1778 209 64 27 chr1 63181646 63181727 -219011937 - MLT1C LTR MaLR 0 467 391 1808 168 3 23 chr1 63181727 63182031 -219011633 - AluJb SINE Alu -14 298 1 1778 209 64 27 chr1 63182031 63182399 -219011265 - MLT1C LTR MaLR -76 391 1 342 258 0 34 chr1 63182982 63183071 -219010593 - MIR SINE MIR -63 145 60 1146 146 5 16 chr1 63183672 63183857 -219009807 + MER20 DNA MER1_type 37 219 0 361 127 0 16 chr1 63184077 63184140 -219009524 - MER91 DNA MER1_type -78 62 1 243 326 64 32 chr1 63185158 63185345 -219008319 + MIR SINE MIR 35 227 -35 383 262 25 16 chr1 63185496 63185618 -219008046 - L2 LINE L2 -213 3059 2937 186 250 62 0 chr1 63186276 63186324 -219007340 - L2 LINE L2 -12 3260 3210 * 264 311 131 8 chr1 63186319 63186441 -219007223 + MIR SINE MIR 28 164 -98 245 220 88 44 chr1 63186882 63186973 -219006691 + MIR SINE MIR 42 136 -72 205 365 0 14 chr1 63187999 63188073 -219005591 + L2 LINE L2 3138 3210 -62 1864 143 24 3 chr1 63188089 63188376 -219005288 - AluSx SINE Alu -19 293 1 226 269 90 0 chr1 63188503 63188581 -219005083 + MIR SINE MIR 126 210 -52 342 106 0 106 chr1 63189043 63189213 -219004451 + (TTAA)n Simple_repeat Simple_repeat 2 153 0 1301 209 90 19 chr1 63189227 63189538 -219004126 - MER2 DNA MER2_type -12 333 1 301 259 152 14 chr1 63189829 63189990 -219003674 - MIR SINE MIR -54 154 34 343 283 135 12 chr1 63190488 63190672 -219002992 - MIR SINE MIR -10 252 45 329 319 71 58 chr1 63191042 63191406 -219002258 - L2 LINE L2 -21 3251 2883 528 252 94 25 chr1 63191653 63191812 -219001852 + MIR SINE MIR 19 188 -74 870 238 33 14 chr1 63192129 63192343 -219001321 - MIR SINE MIR -37 225 8 354 242 21 0 chr1 63192987 63193082 -219000582 + MIR3 SINE MIR 87 183 -25 2159 182 73 6 chr1 63193256 63193695 -218999969 + MLT1F LTR MaLR 3 536 -6 2263 102 0 3 chr1 63193988 63194282 -218999382 + AluSx SINE Alu 1 293 -19 2499 56 0 0 chr1 63194468 63194772 -218998892 - L1PA8 LINE L1 -3 6169 5866 389 190 6 146 chr1 63195779 63195823 -218997841 - L1ME4a LINE L1 -17 6104 6056 1850 189 7 61 chr1 63195823 63196230 -218997434 - MLT1B LTR MaLR -3 387 3 389 190 6 146 chr1 63196230 63196343 -218997321 - L1ME4a LINE L1 -65 6056 5969 980 252 13 0 chr1 63196415 63196645 -218997019 - MIR SINE MIR -12 250 18 201 405 48 4 chr1 63196764 63196991 -218996673 + MIR SINE MIR 23 259 -3 4041 264 98 24 chr1 63197207 63198265 -218995399 - L2 LINE L2 0 3313 2335 453 66 0 0 chr1 63198265 63198326 -218995338 + (TCCA)n Simple_repeat Simple_repeat 2 62 0 4041 264 98 24 chr1 63198326 63199119 -218994545 - L2 LINE L2 -978 2335 1321 351 305 39 16 chr1 63199235 63199363 -218994301 + MIR SINE MIR 22 152 -110 211 310 30 10 chr1 63199722 63199822 -218993842 + MIR SINE MIR 69 170 -92 464 297 0 0 chr1 63200381 63200509 -218993155 - MER94 DNA DNA -5 129 2 211 228 97 53 chr1 63200510 63200624 -218993040 + MIR SINE MIR 78 196 -66 949 181 14 24 chr1 63200658 63200868 -218992796 - AluJo SINE Alu -18 294 87 312 341 52 37 chr1 63200890 63200972 -218992692 + L2 LINE L2 2573 2652 -662 954 153 68 0 chr1 63200972 63201149 -218992515 - MER5A DNA MER1_type 0 189 1 312 341 52 37 chr1 63201149 63201336 -218992328 + L2 LINE L2 2652 2846 -468 305 223 63 23 chr1 63201386 63201494 -218992170 + MIR SINE MIR 11 118 -93 1777 189 183 24 chr1 63201818 63202283 -218991381 + MLT1F LTR MaLR 4 542 0 2871 159 75 27 chr1 63202377 63202963 -218990701 + LTR18B LTR ERVL 1 614 0 294 286 96 28 chr1 63203371 63203549 -218990115 - MIR SINE MIR 0 262 73 261 299 31 21 chr1 63203832 63203929 -218989735 - L2 LINE L2 -212 3060 2963 245 253 126 42 chr1 63203981 63204076 -218989588 + MER5A DNA MER1_type 4 106 -83 322 296 59 30 chr1 63204271 63204440 -218989224 - Charlie8 DNA MER1_type -2243 174 1 250 275 25 0 chr1 63204553 63204633 -218989031 + MIR3 SINE MIR 103 184 -24 351 289 35 13 chr1 63205214 63205390 -218988274 + MIR3 SINE MIR 3 185 -65 772 279 18 5 chr1 63205401 63205623 -218988041 - MIR SINE MIR -7 255 31 303 162 103 15 chr1 63205807 63205875 -218987789 - MIR SINE MIR -80 182 109 281 275 266 0 chr1 63205843 63205952 -218987712 - MIR3 SINE MIR -67 141 4 * 624 199 35 14 chr1 63206676 63206817 -218986847 + MIR SINE MIR 64 207 -55 194 318 16 0 chr1 63206820 63206883 -218986781 + MIR SINE MIR 166 229 -33 312 261 43 52 chr1 63207143 63207258 -218986406 + L2 LINE L2 3138 3251 -21 298 146 73 61 chr1 63207365 63207447 -218986217 + LTR41 LTR ERVL 690 772 -1 228 264 0 0 chr1 63207454 63207507 -218986157 + MIR SINE MIR 2 54 -208 550 258 18 18 chr1 63208375 63208542 -218985122 + LTR16B LTR ERVL 286 452 -12 217 234 43 0 chr1 63208561 63208608 -218985056 + L2 LINE L2 3206 3254 -18 206 161 0 54 chr1 63209470 63209526 -218984138 + CT-rich Low_complexity Low_complexity 5 57 0 305 273 11 11 chr1 63209592 63209680 -218983984 - MER94 DNA DNA -7 127 40 240 200 20 0 chr1 63209713 63209763 -218983901 + (CA)n Simple_repeat Simple_repeat 2 52 0 737 201 53 41 chr1 63210088 63210257 -218983407 - MIR SINE MIR 0 262 92 525 243 15 29 chr1 63210399 63210535 -218983129 + MER94 DNA DNA 1 134 0 2550 208 35 18 chr1 63210689 63211199 -218982465 - LTR40a LTR ERVL 0 519 1 1467 154 109 37 chr1 63211224 63211574 -218982090 + THE1C LTR MaLR 1 375 0 244 290 80 25 chr1 63211951 63212113 -218981551 - L1ME4a LINE L1 -4 6117 5947 346 278 71 60 chr1 63212271 63212523 -218981141 + MIR SINE MIR 8 262 0 267 336 9 26 chr1 63213286 63213402 -218980262 + MIR3 SINE MIR 82 195 -13 23 33 0 0 chr1 63213496 63213526 -218980138 + AT_rich Low_complexity Low_complexity 1 30 0 215 242 44 66 chr1 63213595 63213686 -218979978 - L2 LINE L2 0 3272 3184 204 310 14 0 chr1 63213705 63213776 -218979888 + MIR SINE MIR 83 154 -108 244 308 91 21 chr1 63213936 63214079 -218979585 + L2 LINE L2 2595 2747 -567 310 277 169 15 chr1 63215185 63215315 -218978349 - L3 LINE CR1 -16 1561 1412 242 308 178 5 chr1 63215310 63215495 -218978169 + L2 LINE L2 2605 2821 -493 * 4577 117 5 1 chr1 63215591 63216259 -218977405 + L1PA14 LINE L1 5492 6161 0 443 167 94 10 chr1 63217279 63217375 -218976289 - MLT1L LTR MaLR -6 609 506 327 136 23 102 chr1 63217789 63217877 -218975787 + L1ME LINE L1 5404 5484 -678 815 284 21 8 chr1 63217915 63218154 -218975510 + LTR16A LTR ERVL 209 450 0 881 212 150 78 chr1 63218154 63218513 -218975151 + L1ME3 LINE L1 5777 6161 -1 760 211 31 45 chr1 63218559 63218762 -218974902 + MLT2B1 LTR ERVL 30 231 -183 237 188 0 0 chr1 63218858 63218906 -218974758 + L2 LINE L2 3265 3312 -1 500 238 101 18 chr1 63219141 63219309 -218974355 + MIR SINE MIR 64 245 -17 251 257 131 11 chr1 63219981 63220088 -218973576 + MIR SINE MIR 37 154 -92 1935 181 77 46 chr1 63220138 63220594 -218973070 + MLT2B1 LTR ERVL 2 476 -44 417 39 0 0 chr1 63220594 63220645 -218973019 + (CA)n Simple_repeat Simple_repeat 2 52 0 1935 181 77 46 chr1 63220645 63220684 -218972980 + MLT2B1 LTR ERVL 476 512 -8 26 0 0 0 chr1 63220867 63220893 -218972771 + AT_rich Low_complexity Low_complexity 1 26 0 627 220 23 23 chr1 63220941 63221118 -218972546 - L1ME1 LINE L1 0 6334 5999 2826 171 19 67 chr1 63221293 63221925 -218971739 + MER7C DNA MER2_type 1 602 0 837 281 147 25 chr1 63221990 63222466 -218971198 + L2 LINE L2 2235 2768 -546 195 42 0 0 chr1 63222527 63222551 -218971113 + (CA)n Simple_repeat Simple_repeat 2 25 0 414 227 76 108 chr1 63222719 63222904 -218970760 + L2 LINE L2 3133 3311 -2 271 197 76 15 chr1 63223509 63223575 -218970089 - L2 LINE L2 -49 3264 3195 408 338 20 45 chr1 63223794 63223995 -218969669 - MLT1I LTR MaLR -198 211 16 1872 154 84 0 chr1 63224233 63224544 -218969120 - MER44D DNA MER2_type -2 607 1 414 0 0 0 chr1 63224547 63224593 -218969071 + (CA)n Simple_repeat Simple_repeat 2 47 0 1578 269 77 9 chr1 63224640 63225068 -218968596 - LTR16B LTR ERVL -7 457 1 22 35 0 0 chr1 63225074 63225103 -218968561 + AT_rich Low_complexity Low_complexity 1 29 0 383 306 196 0 chr1 63226697 63226870 -218966794 - MIR SINE MIR -28 234 28 397 229 0 0 chr1 63227141 63227224 -218966440 + MIR SINE MIR 67 149 -113 1171 175 91 27 chr1 63227910 63228186 -218965478 - L1MA9 LINE L1 -20 6279 5988 528 228 18 0 chr1 63228518 63228632 -218965032 + LTR37B LTR ERV1 5 120 -348 923 213 11 0 chr1 63228632 63228815 -218964849 - MER58A DNA MER1_type 0 224 40 1141 176 35 106 chr1 63228829 63229205 -218964459 + LTR37B LTR ERV1 114 462 -6 332 264 208 9 chr1 63229816 63229922 -218963742 + L2 LINE L2 3146 3272 0 272 248 29 67 chr1 63229988 63230093 -218963571 + MIR3 SINE MIR 87 187 -21 361 237 83 39 chr1 63230494 63230650 -218963014 + MIR3 SINE MIR 4 166 -42 767 246 96 18 chr1 63230653 63231075 -218962589 - LTR33 LTR ERVL -3 518 23 4676 109 12 12 chr1 63231343 63232029 -218961635 - L1PA14 LINE L1 -9 6152 5467 2301 111 134 8 chr1 63232030 63232410 -218961254 - MSTA LTR MaLR 0 428 1 1363 108 37 0 chr1 63232412 63232626 -218961038 + L1P4 LINE L1 5264 5485 -676 375 258 105 0 chr1 63232639 63232763 -218960901 + L2 LINE L2 3136 3272 0 255 327 77 0 chr1 63232904 63233008 -218960656 + L2 LINE L2 3153 3264 -8 252 281 62 10 chr1 63233397 63233493 -218960171 - L2 LINE L2 -39 3274 3174 264 291 35 0 chr1 63233612 63233698 -218959966 + L1MC4a LINE L1 5812 5900 -1908 2308 135 43 5 chr1 63233706 63234111 -218959553 + Tigger2 DNA MER2_type 1 2716 -2 246 273 121 23 chr1 63234112 63234244 -218959420 + L1MC4a LINE L1 5904 6048 -1760 646 258 32 32 chr1 63234354 63234606 -218959058 - L2 LINE L2 -185 3087 2836 391 288 98 0 chr1 63234673 63234836 -218958828 - MIR SINE MIR -24 238 60 806 75 0 0 chr1 63235108 63235214 -218958450 + AluSg/x SINE Alu 205 310 0 377 284 10 0 chr1 63235423 63235525 -218958139 - MIR SINE MIR -113 149 47 218 320 41 8 chr1 63235665 63235787 -218957877 - L2 LINE L2 -236 3036 2911 366 205 13 0 chr1 63236411 63236489 -218957175 + MIR SINE MIR 184 262 0 247 243 48 23 chr1 63236507 63236624 -218957040 - MIR SINE MIR -68 140 23 188 225 0 0 chr1 63236801 63236841 -218956823 - MIR SINE MIR -104 158 119 756 229 67 33 chr1 63237491 63237731 -218955933 + MIR SINE MIR 6 253 -9 181 286 0 20 chr1 63237833 63237882 -218955782 - MIR SINE MIR -184 78 31 191 250 0 0 chr1 63238970 63239010 -218954654 + L2 LINE L2 3208 3247 -25 242 257 174 28 chr1 63239115 63239224 -218954440 + L2 LINE L2 3133 3257 -15 314 208 42 0 chr1 63239638 63239710 -218953954 - MIR SINE MIR -116 146 72 680 267 29 15 chr1 63239732 63239938 -218953726 - MIR SINE MIR -16 246 38 223 301 158 8 chr1 63239960 63240093 -218953571 - MER5B DNA MER1_type -20 158 6 216 184 20 20 chr1 63240101 63240150 -218953514 + MIR SINE MIR 97 145 -117 228 262 21 14 chr1 63240714 63240802 -218952862 - MIR SINE MIR -69 139 76 1130 207 89 61 chr1 63241433 63241824 -218951840 + MLT1C LTR MaLR 10 411 -56 23004 31 0 1 chr1 63241826 63245318 -218948346 - L1PA3 LINE L1 0 6155 2667 495 0 0 0 chr1 63245365 63245420 -218948244 + (CA)n Simple_repeat Simple_repeat 2 56 0 1148 295 113 42 chr1 63245658 63246438 -218947226 - ERVL LTR ERVL -384 5380 4546 1557 317 75 43 chr1 63246582 63247740 -218945924 - ERVL LTR ERVL -1888 3636 2403 2394 88 0 13 chr1 63248179 63248485 -218945179 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 63248798 63248819 -218944845 + AT_rich Low_complexity Low_complexity 1 21 0 1773 209 64 27 chr1 63249420 63249501 -218944163 - MLT1C LTR MaLR 0 467 391 1805 166 3 23 chr1 63249501 63249803 -218943861 - AluJb SINE Alu -16 296 1 1773 209 64 27 chr1 63249803 63250171 -218943493 - MLT1C LTR MaLR -76 391 1 342 258 0 34 chr1 63250754 63250843 -218942821 - MIR SINE MIR -63 145 60 1146 146 5 16 chr1 63251444 63251629 -218942035 + MER20 DNA MER1_type 37 219 0 361 127 0 16 chr1 63251849 63251912 -218941752 - MER91 DNA MER1_type -78 62 1 243 326 64 32 chr1 63252929 63253116 -218940548 + MIR SINE MIR 35 227 -35 383 262 25 16 chr1 63253267 63253389 -218940275 - L2 LINE L2 -213 3059 2937 186 250 62 0 chr1 63254047 63254095 -218939569 - L2 LINE L2 -12 3260 3210 * 264 311 131 8 chr1 63254090 63254212 -218939452 + MIR SINE MIR 28 164 -98 232 231 88 44 chr1 63254653 63254744 -218938920 + MIR SINE MIR 42 136 -72 205 365 0 14 chr1 63255770 63255844 -218937820 + L2 LINE L2 3138 3210 -62 1864 143 24 3 chr1 63255860 63256147 -218937517 - AluSx SINE Alu -19 293 1 226 269 90 0 chr1 63256274 63256352 -218937312 + MIR SINE MIR 126 210 -52 252 103 0 103 chr1 63256813 63256929 -218936735 + (TTAA)n Simple_repeat Simple_repeat 4 107 0 1301 209 90 19 chr1 63256943 63257254 -218936410 - MER2 DNA MER2_type -12 333 1 282 265 153 11 chr1 63257545 63257705 -218935959 - MIR SINE MIR -54 154 34 343 283 135 12 chr1 63258203 63258387 -218935277 - MIR SINE MIR -10 252 45 329 319 71 58 chr1 63258757 63259121 -218934543 - L2 LINE L2 -21 3251 2883 528 252 94 25 chr1 63259368 63259527 -218934137 + MIR SINE MIR 19 188 -74 870 238 33 14 chr1 63259844 63260058 -218933606 - MIR SINE MIR -37 225 8 354 242 21 0 chr1 63260702 63260797 -218932867 + MIR3 SINE MIR 87 183 -25 2159 182 72 6 chr1 63260971 63261410 -218932254 + MLT1F LTR MaLR 3 536 -6 2221 101 0 10 chr1 63261703 63262001 -218931663 + AluSq SINE Alu 1 295 -18 636 278 31 15 chr1 63262013 63262239 -218931425 - MLT1H1 LTR MaLR -292 275 32 275 240 94 88 chr1 63262871 63263063 -218930601 + L1ME4a LINE L1 5927 6119 -2 3278 152 14 12 chr1 63263913 63264479 -218929185 + Tigger1 DNA MER2_type 1676 2242 -176 328 206 52 21 chr1 63264656 63264753 -218928911 - LTR33 LTR ERVL -321 200 101 1231 159 17 6 chr1 63264863 63266130 -218927534 + ALR/Alpha Satellite centromeric 1 1280 -27 1039 200 145 83 chr1 63266292 63266637 -218927027 + MLT1C LTR MaLR 67 415 -52 44694 42 2 0 chr1 63266637 63272774 -218920890 - L1PA4 LINE L1 -3 6152 3 241 146 0 21 chr1 63272777 63272825 -218920839 + MLT1C LTR MaLR 403 449 -18 305 266 11 11 chr1 63272875 63272969 -218920695 - MIR SINE MIR -121 141 48 720 231 35 6 chr1 63272972 63273145 -218920519 + MER45A DNA AcHobo 1 178 0 2178 208 59 11 chr1 63273272 63273748 -218919916 + MLT1D LTR MaLR 7 505 0 232 297 0 0 chr1 63274440 63274504 -218919160 + MIR SINE MIR 56 119 -143 819 281 56 61 chr1 63275270 63275679 -218917985 - MLT1J LTR MaLR -92 419 13 779 262 21 0 chr1 63275723 63275910 -218917754 - MLT2E LTR ERVL 0 628 438 370 307 30 0 chr1 63275910 63276011 -218917653 - MLT2E LTR ERVL -400 228 125 * 436 209 78 23 chr1 63275998 63276127 -218917537 - MLT2F LTR ERVL -527 136 1 1696 235 37 15 chr1 63277166 63277622 -218916042 - MLT1C LTR MaLR 0 467 2 208 200 33 17 chr1 63277986 63278046 -218915618 - L2 LINE L2 -12 3260 3200 288 296 28 35 chr1 63278287 63278429 -218915235 - L2 LINE L2 -1 3312 3172 261 0 0 0 chr1 63278749 63278778 -218914886 + (TG)n Simple_repeat Simple_repeat 1 29 0 282 95 0 0 chr1 63278779 63278821 -218914843 + (GA)n Simple_repeat Simple_repeat 2 43 0 304 320 56 0 chr1 63279270 63279395 -218914269 - L2 LINE L2 -236 3036 2905 265 262 0 0 chr1 63281476 63281537 -218912127 + CT-rich Low_complexity Low_complexity 3 63 0 327 242 73 32 chr1 63281860 63281984 -218911680 - MIR SINE MIR -84 178 50 22 0 0 0 chr1 63282231 63282253 -218911411 + AT_rich Low_complexity Low_complexity 1 22 0 1505 207 61 96 chr1 63283331 63283891 -218909773 - MLT1F LTR MaLR 0 542 3 218 191 0 0 chr1 63285071 63285113 -218908551 + MIR SINE MIR 111 152 -110 183 162 0 0 chr1 63285166 63285203 -218908461 + MIR SINE MIR 117 153 -109 263 320 8 25 chr1 63285328 63285450 -218908214 + MIR SINE MIR 20 139 -123 258 337 0 32 chr1 63285982 63286077 -218907587 - L2 LINE L2 0 3313 3222 195 42 0 0 chr1 63286215 63286239 -218907425 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1404 93 0 47 chr1 63286271 63286464 -218907200 - AluSx SINE Alu -128 184 1 552 242 48 30 chr1 63286501 63286666 -218906998 + MIR SINE MIR 29 196 -66 338 246 112 37 chr1 63287676 63287810 -218905854 + MIR SINE MIR 23 166 -96 337 272 69 64 chr1 63288385 63288558 -218905106 - MIR3 SINE MIR -3 205 32 406 207 24 0 chr1 63288827 63288909 -218904755 - MER96 DNA MER1_type? -91 84 1 363 307 165 26 chr1 63288910 63289177 -218904487 + L2 LINE L2 2887 3190 -123 351 327 78 27 chr1 63289918 63290175 -218903489 + L2 LINE L2 2253 2522 -792 2535 141 6 3 chr1 63290200 63290561 -218903103 - THE1B LTR MaLR -2 362 1 706 201 91 40 chr1 63290604 63290653 -218903011 - MER6B DNA MER2_type -656 209 164 2761 72 31 3 chr1 63290653 63291002 -218902662 - L1PA7 LINE L1 -3 6151 5793 706 201 91 40 chr1 63291002 63291151 -218902513 - MER6B DNA MER2_type -701 164 1 540 267 142 52 chr1 63291232 63291576 -218902088 - MLT1J LTR MaLR -51 460 86 207 342 116 82 chr1 63291667 63292056 -218901608 + L2 LINE L2 2822 3223 -49 2424 127 28 40 chr1 63292200 63292483 -218901181 - MLT1B LTR MaLR 0 390 112 2266 104 3 7 chr1 63292483 63292791 -218900873 - AluSp SINE Alu -6 307 1 2424 127 28 40 chr1 63292791 63292902 -218900762 - MLT1B LTR MaLR -278 112 1 277 313 73 0 chr1 63292990 63293086 -218900578 + L2 LINE L2 3145 3247 -25 434 303 129 6 chr1 63293571 63293787 -218899877 + MIR SINE MIR 16 249 -13 268 173 67 115 chr1 63293827 63293931 -218899733 + MIR SINE MIR 118 216 -46 305 265 20 41 chr1 63294073 63294171 -218899493 + MIR3 SINE MIR 11 106 -102 198 103 0 0 chr1 63295301 63295330 -218898334 + (TTCTCC)n Simple_repeat Simple_repeat 6 34 0 4275 154 16 29 chr1 63295333 63296091 -218897573 - L1MB2 LINE L1 -2 6169 5422 2472 161 25 50 chr1 63296209 63296688 -218896976 - MLT1C LTR MaLR 0 467 1 1009 311 94 17 chr1 63297341 63297743 -218895921 + LTR16A LTR ERVL 18 450 0 487 305 58 21 chr1 63298666 63298856 -218894808 + MLT1I LTR MaLR 4 200 -209 211 325 87 55 chr1 63298863 63298990 -218894674 + MIR SINE MIR 39 168 -94 657 262 85 80 chr1 63299395 63299957 -218893707 - L2 LINE L2 -2 3311 2737 584 274 0 63 chr1 63299976 63300213 -218893451 - L1ME1 LINE L1 -8 6227 6006 6581 154 19 23 chr1 63300239 63300397 -218893267 - L1MA4 LINE L1 -20 6280 6123 2108 104 0 0 chr1 63300397 63300665 -218892999 + AluSg SINE Alu 39 306 -4 6581 154 19 23 chr1 63300665 63302639 -218891025 - L1MA4 LINE L1 -177 6123 4157 5279 219 63 31 chr1 63302628 63304600 -218889064 - L1ME1 LINE L1 -222 6013 3952 * 2622 108 24 14 chr1 63304600 63304971 -218888693 + THE1C LTR MaLR 1 375 0 5279 219 63 31 chr1 63304971 63305150 -218888514 - L1ME1 LINE L1 -2283 3952 3780 988 166 36 14 chr1 63305147 63305370 -218888294 - L1ME1 LINE L1 -4125 2271 2044 * 185 290 54 21 chr1 63305881 63305974 -218887690 + L2 LINE L2 2878 2973 -340 834 235 43 26 chr1 63306595 63306829 -218886835 - L1ME3A LINE L1 0 6170 5933 1570 191 117 3 chr1 63306841 63307150 -218886514 - MER2 DNA MER2_type -1 344 1 571 198 124 145 chr1 63307461 63308018 -218885646 + MER34C LTR ERV1 35 579 -6 30 27 0 0 chr1 63308210 63308247 -218885417 + AT_rich Low_complexity Low_complexity 1 37 0 295 339 36 52 chr1 63308709 63308810 -218884854 - MIR SINE MIR -3 259 161 613 189 10 107 chr1 63308810 63309006 -218884658 + MER104 DNA MER2_type 1 177 -3 295 339 36 52 chr1 63309006 63309096 -218884568 - MIR SINE MIR -101 161 71 518 230 122 7 chr1 63309900 63310039 -218883625 - MIR3 SINE MIR -16 192 38 199 280 20 0 chr1 63310399 63310449 -218883215 + L2 LINE L2 2925 2975 -338 264 389 9 28 chr1 63310735 63310843 -218882821 - L2 LINE L2 -46 3226 3121 307 288 12 0 chr1 63310863 63310943 -218882721 - MIR SINE MIR -110 152 72 336 356 70 6 chr1 63311113 63311309 -218882355 - MIR SINE MIR -54 208 3 2512 144 8 13 chr1 63312076 63312452 -218881212 - THE1C LTR MaLR 0 375 2 10320 123 36 37 chr1 63312453 63314035 -218879629 - THE1C-int LTR MaLR 0 1580 1 2472 126 10 49 chr1 63314035 63314425 -218879239 - THE1C LTR MaLR 0 375 1 536 248 83 8 chr1 63314557 63314678 -218878986 - MIR SINE MIR -110 152 23 231 181 9 162 chr1 63315200 63315246 -218878418 - L2 LINE L2 -4 3268 3245 297 0 0 0 chr1 63315246 63315279 -218878385 + (TG)n Simple_repeat Simple_repeat 1 33 0 231 181 9 162 chr1 63315279 63315337 -218878327 - L2 LINE L2 -27 3245 3180 410 202 32 81 chr1 63315837 63315944 -218877720 - LTR52 LTR ERVL -303 118 16 1308 208 39 42 chr1 63315944 63316123 -218877541 - AluJo SINE Alu -1 311 132 204 40 0 0 chr1 63316123 63316148 -218877516 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1308 208 39 42 chr1 63316148 63316280 -218877384 - AluJo SINE Alu -180 132 1 410 202 32 81 chr1 63316280 63316296 -218877368 - LTR52 LTR ERVL -405 16 1 913 297 77 77 chr1 63316296 63317308 -218876356 + L2 LINE L2 2283 3294 -19 4127 253 67 53 chr1 63317669 63319036 -218874628 + MER69 DNA AcHobo 1 1386 -1140 1982 203 126 31 chr1 63319188 63319775 -218873889 + MER69 DNA AcHobo 1884 2526 0 1292 188 156 33 chr1 63320057 63320455 -218873209 + MLT1C LTR MaLR 18 464 -3 246 371 52 0 chr1 63320573 63320689 -218872975 - L2 LINE L2 -13 3259 3138 2384 127 36 28 chr1 63321296 63321657 -218872007 + THE1B LTR MaLR 1 364 0 223 297 66 0 chr1 63322581 63322672 -218870992 + MIR SINE MIR 51 147 -61 2960 173 0 12 chr1 63322851 63323337 -218870327 + MLT2B2 LTR ERVL 4 483 -32 251 250 71 12 chr1 63323375 63323459 -218870205 - MER91C DNA MER1_type -18 122 34 510 285 36 26 chr1 63323471 63323664 -218870000 - ERVL LTR ERVL -3366 2398 2204 214 200 0 0 chr1 63324005 63324045 -218869619 - L2 LINE L2 -1 3312 3273 2989 82 3 13 chr1 63324204 63324583 -218869081 + THE1C LTR MaLR 1 375 0 6891 119 32 8 chr1 63324583 63325962 -218867702 + THE1C-int LTR MaLR 1 1451 -129 2291 123 3 15 chr1 63325962 63326295 -218867369 + THE1C LTR MaLR 47 375 0 265 289 24 0 chr1 63326299 63326382 -218867282 + L2 LINE L2 2927 3011 -302 872 305 9 2 chr1 63326403 63326749 -218866915 + MLT2E LTR ERVL 19 420 -208 452 222 90 35 chr1 63326786 63326930 -218866734 + MIR SINE MIR 111 262 0 207 337 31 0 chr1 63327007 63327105 -218866559 - L2 LINE L2 -577 2737 2637 359 305 45 28 chr1 63327382 63327559 -218866105 + MIR SINE MIR 77 256 -6 198 333 57 0 chr1 63327589 63327694 -218865970 + MIR SINE MIR 146 256 -6 2122 171 28 6 chr1 63327850 63328207 -218865457 - MLT1A1 LTR MaLR 0 365 1 623 313 13 30 chr1 63328842 63329075 -218864589 - L2 LINE L2 -2 3311 3083 240 309 15 0 chr1 63329129 63329197 -218864467 - L2 LINE L2 -40 3273 3205 493 295 79 16 chr1 63329200 63329390 -218864274 + MLT1J LTR MaLR 1 202 -309 2289 150 52 60 chr1 63329423 63329870 -218863794 + MER65A LTR ERV1 3 445 0 497 240 45 39 chr1 63329883 63330037 -218863627 + MLT1J2 LTR MaLR 293 447 -3 288 356 0 41 chr1 63330189 63330335 -218863329 - L2 LINE L2 -216 3056 2917 459 272 220 11 chr1 63330874 63331065 -218862599 - MIR SINE MIR -15 247 17 342 308 112 21 chr1 63331629 63331772 -218861892 - MIR SINE MIR -73 189 34 380 242 150 0 chr1 63331865 63331985 -218861679 - MER112 DNA MER1_type -43 217 80 283 289 67 0 chr1 63332586 63332676 -218860988 + Charlie7 DNA MER1_type 1 96 -2516 23 0 0 0 chr1 63332704 63332727 -218860937 + AT_rich Low_complexity Low_complexity 1 23 0 261 197 98 0 chr1 63332950 63333011 -218860653 + HsTC2 DNA Tc2 3 69 -1829 189 107 0 0 chr1 63333101 63333129 -218860535 + (TG)n Simple_repeat Simple_repeat 1 28 0 1755 129 20 115 chr1 63333147 63333503 -218860161 + MER7A DNA MER2_type 10 329 -17 28 61 0 0 chr1 63333918 63333967 -218859697 + AT_rich Low_complexity Low_complexity 1 49 0 477 317 94 38 chr1 63334123 63334388 -218859276 - L1ME2 LINE L1 -172 5949 5670 1603 201 19 10 chr1 63334398 63334707 -218858957 - MSTD-int LTR MaLR -1423 312 1 2101 169 39 26 chr1 63334709 63335099 -218858565 - MSTD LTR MaLR -1 395 1 607 306 106 32 chr1 63335282 63336381 -218857283 - L1ME2 LINE L1 -1537 4609 3430 404 281 23 59 chr1 63336427 63336496 -218857168 + HsTC2 DNA Tc2 679 749 -1149 2278 116 0 0 chr1 63336496 63336798 -218856866 + AluSx SINE Alu 1 302 -10 404 281 23 59 chr1 63336798 63336949 -218856715 + HsTC2 DNA Tc2 749 891 -1007 182 374 111 10 chr1 63337330 63337429 -218856235 + L2 LINE L2 3141 3249 -23 250 249 43 108 chr1 63338211 63338396 -218855268 + L2 LINE L2 2892 3064 -208 758 276 61 29 chr1 63340398 63340644 -218853020 - MIR SINE MIR -6 256 3 407 285 70 13 chr1 63341235 63341393 -218852271 + MIR SINE MIR 46 212 -50 190 458 23 0 chr1 63341510 63341641 -218852023 - L2 LINE L2 0 3272 3139 2015 172 27 3 chr1 63341767 63342134 -218851530 + MLT1B LTR MaLR 3 378 -12 246 111 0 0 chr1 63342153 63342189 -218851475 + L2 LINE L2 3277 3312 -1 208 298 152 19 chr1 63342268 63342426 -218851238 - L2 LINE L2 -345 2969 2791 210 220 68 0 chr1 63342538 63342597 -218851067 - MIR SINE MIR -59 203 141 264 265 0 0 chr1 63342823 63342921 -218850743 + (TG)n Simple_repeat Simple_repeat 2 99 0 648 242 7 123 chr1 63344036 63344305 -218849359 - MLT1H LTR MaLR -179 370 133 412 267 91 105 chr1 63344928 63345280 -218848384 + L2 LINE L2 2925 3271 -1 376 278 39 67 chr1 63346151 63346331 -218847333 + MIR SINE MIR 23 197 -65 261 0 0 0 chr1 63347084 63347113 -218846551 + (T)n Simple_repeat Simple_repeat 1 29 0 266 44 0 67 chr1 63347892 63347937 -218845727 + (T)n Simple_repeat Simple_repeat 1 42 0 1924 252 50 64 chr1 63348560 63349298 -218844366 - MER21B LTR ERV1 -109 754 27 475 301 24 0 chr1 63349897 63350020 -218843644 - L2 LINE L2 0 3313 3188 22 0 0 0 chr1 63350032 63350054 -218843610 + AT_rich Low_complexity Low_complexity 1 22 0 535 278 139 0 chr1 63350101 63350295 -218843369 - MIR SINE MIR -30 232 12 252 253 35 46 chr1 63351228 63351315 -218842349 + MIR3 SINE MIR 93 178 -30 209 259 0 19 chr1 63351770 63351824 -218841840 + C-rich Low_complexity Low_complexity 3 55 0 456 191 136 18 chr1 63352037 63352147 -218841517 - FRAM SINE Alu -18 158 36 662 199 81 11 chr1 63352155 63352341 -218841323 - MER5C DNA MER1_type -44 280 82 359 289 73 60 chr1 63352462 63352680 -218840984 + MIR SINE MIR 23 243 -19 461 242 40 24 chr1 63352876 63353000 -218840664 + L2 LINE L2 3183 3308 -5 385 200 0 0 chr1 63353372 63353437 -218840227 - MIR3 SINE MIR 0 208 144 654 243 108 45 chr1 63353442 63353664 -218840000 + MIR SINE MIR 1 236 -26 210 286 219 9 chr1 63353703 63353808 -218839856 - MIR3 SINE MIR -76 132 6 301 374 70 6 chr1 63353825 63353996 -218839668 - MIR3 SINE MIR -15 193 12 521 195 8 25 chr1 63354391 63354509 -218839155 + MIR SINE MIR 130 245 -17 1537 35 69 5 chr1 63354703 63354905 -218838759 - L1PA4 LINE L1 -3 6152 5938 795 190 19 6 chr1 63354924 63355082 -218838582 + MER58A DNA MER1_type 1 160 0 573 88 0 0 chr1 63355208 63355288 -218838376 + (CA)n Simple_repeat Simple_repeat 2 81 0 256 363 35 9 chr1 63355572 63355685 -218837979 + MIR SINE MIR 16 131 -77 252 193 88 18 chr1 63355984 63356041 -218837623 - MIR3 SINE MIR -144 64 4 515 278 43 24 chr1 63356310 63356522 -218837142 - MIR3 SINE MIR -44 218 4 215 304 0 0 chr1 63356884 63356940 -218836724 + MIR SINE MIR 95 150 -58 708 315 77 6 chr1 63356953 63357264 -218836400 - MLT1I LTR MaLR -14 395 63 581 344 31 31 chr1 63357348 63357703 -218835961 + L2 LINE L2 2286 2640 -674 31 26 0 0 chr1 63357785 63357823 -218835841 + AT_rich Low_complexity Low_complexity 1 38 0 478 331 6 6 chr1 63358252 63358421 -218835243 - MIR3 SINE MIR -22 186 18 411 304 26 35 chr1 63358643 63358818 -218834846 + MIR SINE MIR 20 192 -30 1764 171 0 17 chr1 63359099 63359386 -218834278 - AluJo SINE Alu -30 282 1 255 202 0 73 chr1 63359726 63359837 -218833827 + Charlie8 DNA MER1_type 225 2407 -10 307 344 66 29 chr1 63359896 63360140 -218833524 - L2 LINE L2 -631 2683 2431 237 352 0 0 chr1 63360152 63360223 -218833441 + L2 LINE L2 3202 3272 0 186 71 0 0 chr1 63361130 63361158 -218832506 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 180 340 0 0 chr1 63361216 63361269 -218832395 + L2 LINE L2 2999 3051 -262 225 288 152 0 chr1 63361337 63361469 -218832195 + L2 LINE L2 3161 3312 -1 389 332 18 95 chr1 63361510 63361743 -218831921 - L2 LINE L2 -85 3187 2978 2266 119 0 0 chr1 63361743 63362045 -218831619 - AluSc SINE Alu -7 302 1 389 332 18 95 chr1 63362045 63362094 -218831570 - L2 LINE L2 -294 2978 2927 1688 240 34 46 chr1 63362683 63362904 -218830760 - L1ME1 LINE L1 -55 6111 5889 951 170 33 33 chr1 63362904 63363116 -218830548 - L1PA15 LINE L1 -9 6156 5945 1688 240 34 46 chr1 63363116 63363478 -218830186 - L1ME1 LINE L1 -277 5889 5535 272 214 0 0 chr1 63363500 63363556 -218830108 - MIR SINE MIR -79 129 74 239 243 46 139 chr1 63363638 63363811 -218829853 - MIR SINE MIR -71 191 35 217 219 0 31 chr1 63364403 63364499 -218829165 + A-rich Low_complexity Low_complexity 5 97 0 336 324 141 12 chr1 63364963 63365133 -218828531 + MIR SINE MIR 28 219 -43 766 207 46 27 chr1 63365632 63365860 -218827804 + MIR SINE MIR 37 261 -1 185 288 38 38 chr1 63365905 63365985 -218827679 - L2 LINE L2 -86 3227 3148 3895 152 5 34 chr1 63366016 63366233 -218827431 - L1P5 LINE L1 -612 5539 5317 2284 118 0 3 chr1 63366233 63366538 -218827126 - AluSq SINE Alu -9 304 1 3895 152 5 34 chr1 63366538 63367405 -218826259 - L1P5 LINE L1 -834 5317 4479 1739 102 11 0 chr1 63367391 63367655 -218826009 + L1P5 LINE L1 5525 5791 -360 * 422 133 6 69 chr1 63367662 63367835 -218825829 + (TA)n Simple_repeat Simple_repeat 1 162 0 371 138 26 85 chr1 63367877 63368066 -218825598 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 407 276 59 6 chr1 63368073 63368243 -218825421 + (TATG)n Simple_repeat Simple_repeat 2 180 0 350 156 17 72 chr1 63368275 63368455 -218825209 + (TATATG)n Simple_repeat Simple_repeat 1 170 0 439 121 15 111 chr1 63368458 63368656 -218825008 + (TA)n Simple_repeat Simple_repeat 1 179 0 441 129 11 70 chr1 63368672 63368858 -218824806 + (TA)n Simple_repeat Simple_repeat 1 175 0 208 174 11 82 chr1 63368873 63369057 -218824607 + (CATATA)n Simple_repeat Simple_repeat 3 173 0 247 236 31 55 chr1 63369131 63369258 -218824406 + (TATATG)n Simple_repeat Simple_repeat 2 125 0 * 420 192 0 96 chr1 63369169 63369453 -218824211 + (TA)n Simple_repeat Simple_repeat 1 256 0 321 177 10 62 chr1 63369454 63369550 -218824114 + L1MC4 LINE L1 6613 6703 -1339 339 149 5 82 chr1 63369579 63369773 -218823891 + (TA)n Simple_repeat Simple_repeat 2 180 0 512 112 32 56 chr1 63369832 63370175 -218823489 + (TA)n Simple_repeat Simple_repeat 1 334 0 242 116 50 55 chr1 63370209 63370390 -218823274 + (TA)n Simple_repeat Simple_repeat 1 180 0 455 87 40 69 chr1 63370409 63370693 -218822971 + (TA)n Simple_repeat Simple_repeat 1 275 0 188 46 15 92 chr1 63370716 63370781 -218822883 + (TA)n Simple_repeat Simple_repeat 1 60 0 1170 81 17 6 chr1 63370781 63370955 -218822709 - L1PB2 LINE L1 -199 5952 5777 7682 58 18 0 chr1 63371103 63372140 -218821524 + L1P LINE L1 220 1275 -4871 9074 32 2 0 chr1 63372240 63373424 -218820240 + L1P LINE L1 2369 3554 -2592 225 209 39 31 chr1 63373903 63374032 -218819632 + (TA)n Simple_repeat Simple_repeat 2 131 0 199 306 105 16 chr1 63374080 63374204 -218819460 + MIR SINE MIR 104 238 -24 236 345 109 9 chr1 63374372 63374482 -218819182 + MIR SINE MIR 123 243 -19 689 365 51 23 chr1 63375396 63375968 -218817696 - L2 LINE L2 -1021 2293 1706 265 31 0 0 chr1 63376223 63376255 -218817409 + MLT1B LTR MaLR 1 32 -358 501 80 47 60 chr1 63376376 63376677 -218816987 + (TA)n Simple_repeat Simple_repeat 1 297 0 2290 99 8 47 chr1 63376682 63377013 -218816651 + L1PB2 LINE L1 5782 6098 -53 2086 146 0 0 chr1 63377013 63377315 -218816349 + AluSq SINE Alu 9 310 -3 2290 99 8 47 chr1 63377315 63377366 -218816298 + L1PB2 LINE L1 6098 6149 -2 31 68 0 0 chr1 63377366 63377425 -218816239 + AT_rich Low_complexity Low_complexity 1 59 0 402 39 0 0 chr1 63377468 63377520 -218816144 + (TG)n Simple_repeat Simple_repeat 2 53 0 582 290 21 16 chr1 63377751 63377944 -218815720 - MER20 DNA MER1_type -25 194 1 281 383 8 31 chr1 63377947 63378075 -218815589 - MIR SINE MIR -55 153 29 257 198 206 24 chr1 63378788 63378914 -218814750 + MLT1J2 LTR MaLR 1 149 -301 251 211 25 0 chr1 63378959 63379031 -218814633 + MLT1J2 LTR MaLR 263 322 -128 404 245 19 50 chr1 63379363 63379522 -218814142 + MIR SINE MIR 102 255 -7 358 266 46 28 chr1 63379730 63379839 -218813825 + MIR3 SINE MIR 92 202 -6 378 214 36 36 chr1 63380122 63380262 -218813402 + CT-rich Low_complexity Low_complexity 5 144 0 1729 197 0 17 chr1 63381375 63381675 -218811989 - AluJo SINE Alu -17 295 1 201 304 80 40 chr1 63381758 63381883 -218811781 + L2 LINE L2 3159 3288 -25 1189 276 53 30 chr1 63382086 63382593 -218811071 + LTR33 LTR ERVL 1 519 -2 445 304 7 7 chr1 63382777 63382912 -218810752 - L2 LINE L2 -1 3312 3178 242 300 30 20 chr1 63383283 63383383 -218810281 - MIR SINE MIR -59 203 103 21 36 0 0 chr1 63383783 63383811 -218809853 + AT_rich Low_complexity Low_complexity 1 28 0 1370 155 0 5 chr1 63384007 63384213 -218809451 - L1PB3 LINE L1 -3 6151 5947 5942 114 12 16 chr1 63384229 63385084 -218808580 - L1PA16 LINE L1 0 6166 5309 2285 74 0 55 chr1 63385084 63385409 -218808255 - AluY SINE Alu -4 307 1 5942 114 12 16 chr1 63385409 63386357 -218807307 - L1PA16 LINE L1 -857 5309 4379 857 104 28 42 chr1 63386373 63386517 -218807147 - L1PB1 LINE L1 0 6151 6010 8994 254 41 29 chr1 63386517 63389775 -218803889 - L1PA16 LINE L1 -492 5678 2079 7330 60 15 0 chr1 63389775 63390861 -218802803 - L1PA6 LINE L1 -3 6151 5066 8994 254 41 29 chr1 63390861 63391143 -218802521 - L1PA16 LINE L1 -4091 2079 1802 623 322 78 11 chr1 63391238 63391614 -218802050 + LTR16A1 LTR ERVL 72 453 -4 627 192 58 13 chr1 63391623 63391779 -218801885 - L1M4 LINE L1 -1528 4618 4456 3318 139 10 2 chr1 63391786 63392289 -218801375 + MER7C DNA MER2_type 2 508 -94 21 36 0 0 chr1 63392289 63392317 -218801347 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 63392351 63392383 -218801281 + AT_rich Low_complexity Low_complexity 1 32 0 576 239 16 66 chr1 63392383 63392626 -218801038 - L1M4 LINE L1 -1820 4326 4096 246 317 56 21 chr1 63393407 63393549 -218800115 - MIR SINE MIR -30 232 86 374 288 109 22 chr1 63393612 63393796 -218799868 + L3 LINE CR1 1213 1412 -165 335 275 66 52 chr1 63394217 63394428 -218799236 - L2 LINE L2 -339 2975 2762 1149 271 51 32 chr1 63395295 63395730 -218797934 + LTR33 LTR ERVL 24 466 -55 269 316 108 63 chr1 63395854 63396170 -218797494 + L2 LINE L2 2597 2926 -388 571 272 57 13 chr1 63396230 63396388 -218797276 - MIR SINE MIR -67 195 31 232 293 53 105 chr1 63396408 63396541 -218797123 + L2 LINE L2 2983 3108 -164 327 294 101 0 chr1 63396809 63396918 -218796746 - L2 LINE L2 -4 3309 3190 220 214 0 0 chr1 63397448 63397490 -218796174 - MIR SINE MIR -62 146 105 5683 109 68 2 chr1 63397490 63398382 -218795282 - L1P LINE L1 -2805 3341 2391 241 223 0 22 chr1 63398392 63398449 -218795215 - MIR SINE MIR -138 70 16 1069 224 0 0 chr1 63398453 63398658 -218795006 + MER3 DNA MER1_type 1 205 -4 229 180 180 16 chr1 63398839 63398900 -218794764 + LTR11 LTR ERV 422 492 -192 203 331 56 28 chr1 63399112 63399254 -218794410 - MIR SINE MIR -57 205 60 456 283 25 0 chr1 63399940 63400060 -218793604 - MIR3 SINE MIR -14 194 72 2567 57 0 0 chr1 63400078 63400379 -218793285 + AluY SINE Alu 1 301 -10 331 305 120 0 chr1 63400728 63400895 -218792769 - MIR SINE MIR 0 262 76 259 308 222 0 chr1 63400898 63401015 -218792649 - L2 LINE L2 0 3313 3171 752 238 40 60 chr1 63401175 63401423 -218792241 - MIR SINE MIR -1 261 19 1369 257 127 30 chr1 63402182 63402694 -218790970 - MLT1G1 LTR MaLR -5 533 1 628 287 116 10 chr1 63402846 63403139 -218790525 - LTR16A LTR ERVL -2 448 125 189 333 111 8 chr1 63403911 63404028 -218789636 + MIR SINE MIR 103 231 -31 467 244 135 13 chr1 63404178 63404338 -218789326 + MIR SINE MIR 53 230 -32 318 272 122 55 chr1 63404636 63404865 -218788799 + MIR SINE MIR 18 262 0 393 259 96 30 chr1 63405896 63406062 -218787602 - MIR SINE MIR -75 187 11 491 328 17 11 chr1 63406311 63406488 -218787176 - MER5B DNA MER1_type 0 178 1 195 129 0 0 chr1 63407075 63407106 -218786558 + (TG)n Simple_repeat Simple_repeat 2 32 0 241 231 0 46 chr1 63407113 63407178 -218786486 + L2 LINE L2 3252 3313 0 1198 210 5 5 chr1 63407246 63407465 -218786199 - MER58A DNA MER1_type -5 219 1 322 256 161 18 chr1 63407496 63407664 -218786000 - MER117 DNA MER1_type -1 196 5 197 273 80 34 chr1 63407705 63407793 -218785871 + MIR SINE MIR 32 123 -139 363 269 85 14 chr1 63408443 63408584 -218785080 - MIR SINE MIR -10 252 102 291 112 0 8 chr1 63408628 63408679 -218784985 - MLT2C2 LTR ERVL -8 456 417 256 289 0 31 chr1 63408679 63408776 -218784888 + L1MC4 LINE L1 6615 6708 -1334 1028 185 0 0 chr1 63408785 63408958 -218784706 - MLT2C2 LTR ERVL -54 410 238 432 293 167 60 chr1 63409351 63409669 -218783995 + L2 LINE L2 2909 3260 -12 1883 166 88 15 chr1 63410212 63410622 -218783042 - MER101 LTR ERV1 -24 450 11 1884 196 150 0 chr1 63410817 63411358 -218782306 - MER114 LTR ERV -6 642 21 1778 204 22 30 chr1 63413044 63413412 -218780252 - MLT1A1 LTR MaLR 0 365 1 248 333 0 14 chr1 63413818 63413890 -218779774 - L2 LINE L2 -993 2321 2251 253 250 15 15 chr1 63414642 63414710 -218778954 - MLT1K LTR MaLR 0 588 521 600 311 14 24 chr1 63415202 63415411 -218778253 - MLT1I LTR MaLR -109 300 94 1069 224 43 56 chr1 63415952 63416339 -218777325 + MLT2B1 LTR ERVL 1 480 -40 255 150 0 50 chr1 63416384 63416444 -218777220 + MLT2B1 LTR ERVL 464 520 0 3183 70 5 0 chr1 63416569 63416956 -218776708 - L1PA7 LINE L1 -1 6153 5765 305 305 100 37 chr1 63417068 63417258 -218776406 - MIR SINE MIR -52 210 9 28 86 0 0 chr1 63417877 63417947 -218775717 + AT_rich Low_complexity Low_complexity 1 70 0 1351 292 26 8 chr1 63418009 63418400 -218775264 + LTR16A LTR ERVL 43 440 -10 206 266 47 16 chr1 63418624 63418688 -218774976 - MIR SINE MIR -135 127 62 192 143 16 63 chr1 63419042 63419105 -218774559 + GA-rich Low_complexity Low_complexity 5 64 0 229 257 40 14 chr1 63421278 63421352 -218772312 + CT-rich Low_complexity Low_complexity 1 76 0 343 321 18 24 chr1 63421352 63421517 -218772147 - L2 LINE L2 -25 3288 3125 382 222 26 60 chr1 63422036 63422153 -218771511 + MIR3 SINE MIR 87 199 -9 369 357 32 13 chr1 63422652 63422809 -218770855 - MIR SINE MIR -77 185 26 302 204 97 117 chr1 63423966 63424162 -218769502 - L2 LINE L2 -97 3216 3025 22 0 0 0 chr1 63424174 63424196 -218769468 + AT_rich Low_complexity Low_complexity 1 22 0 224 316 79 0 chr1 63424251 63424327 -218769337 - MIR SINE MIR -79 129 48 195 139 0 0 chr1 63425197 63425233 -218768431 + (T)n Simple_repeat Simple_repeat 1 36 0 215 312 108 0 chr1 63426032 63426125 -218767539 + MIR SINE MIR 50 152 -56 1298 254 96 31 chr1 63426574 63427022 -218766642 + MLT1H LTR MaLR 73 549 0 338 265 0 94 chr1 63427179 63427296 -218766368 - MER91C DNA MER1_type -1 139 34 208 259 0 35 chr1 63427488 63427546 -218766118 + MIR3 SINE MIR 145 200 -8 243 328 0 0 chr1 63428029 63428096 -218765568 + MIR SINE MIR 32 98 -110 * 435 289 33 8 chr1 63428093 63428214 -218765450 - MER5B DNA MER1_type -53 125 2 237 336 44 35 chr1 63428214 63428315 -218765349 + MIR SINE MIR 103 204 -58 250 300 146 0 chr1 63428770 63428880 -218764784 - L2 LINE L2 -3 3269 3144 193 362 103 39 chr1 63429015 63429247 -218764417 + L2 LINE L2 2731 2977 -337 324 348 43 30 chr1 63429310 63429474 -218764190 + L2 LINE L2 2925 3090 -182 203 288 311 0 chr1 63430039 63430171 -218763493 + MIR3 SINE MIR 28 200 -8 199 351 13 0 chr1 63430411 63430488 -218763176 + L2 LINE L2 2895 2972 -300 317 321 23 38 chr1 63431223 63431354 -218762310 + MIR SINE MIR 18 146 -116 201 365 0 0 chr1 63432439 63432502 -218761162 + (CTG)n Simple_repeat Simple_repeat 2 64 0 * 245 303 0 0 chr1 63432458 63432524 -218761140 + (CTA)n Simple_repeat Simple_repeat 1 66 0 352 278 31 34 chr1 63432537 63432734 -218760930 + MIR SINE MIR 3 253 -9 189 298 70 35 chr1 63433417 63433531 -218760133 - L2 LINE L2 -606 2708 2591 1741 189 17 3 chr1 63433531 63433833 -218759831 - ERVL LTR ERVL -2106 3658 3353 237 258 124 0 chr1 63434152 63434249 -218759415 - L2 LINE L2 -222 3050 2942 259 328 52 81 chr1 63434800 63435169 -218758495 + L2 LINE L2 2872 3229 -43 398 328 67 17 chr1 63435372 63435552 -218758112 + MIR SINE MIR 20 208 -54 1742 149 3 47 chr1 63436309 63436610 -218757054 - AluSx SINE Alu -19 293 6 1034 180 115 25 chr1 63436618 63436818 -218756846 + MER20 DNA MER1_type 1 218 -1 651 76 0 0 chr1 63436980 63437059 -218756605 + AluSc SINE Alu 213 291 -18 320 317 103 14 chr1 63437059 63437204 -218756460 - MIR SINE MIR -91 171 14 184 341 11 23 chr1 63437975 63438063 -218755601 - MIR3 SINE MIR -23 185 99 237 394 10 10 chr1 63438429 63438528 -218755136 + MIR SINE MIR 36 134 -128 200 277 36 12 chr1 63438988 63439071 -218754593 + L3 LINE CR1 931 1015 -562 213 347 21 0 chr1 63439165 63439260 -218754404 + L2 LINE L2 2370 2466 -848 245 359 103 28 chr1 63439440 63439827 -218753837 - L2 LINE L2 -475 2839 2424 203 337 64 48 chr1 63439817 63440004 -218753660 + L3 LINE CR1 1197 1386 -191 * 219 309 40 48 chr1 63440218 63440344 -218753320 + MIR3 SINE MIR 39 163 -45 315 263 62 0 chr1 63440434 63440514 -218753150 - MIR SINE MIR -73 189 105 314 293 71 0 chr1 63440832 63440931 -218752733 + L2 LINE L2 3162 3267 -5 1206 270 53 46 chr1 63441035 63441069 -218752595 - L2 LINE L2 -922 2392 2360 2401 97 3 0 chr1 63441069 63441380 -218752284 - AluSx SINE Alu 0 312 1 1206 270 53 46 chr1 63441380 63441871 -218751793 - L2 LINE L2 -954 2360 1863 641 301 77 54 chr1 63441928 63442320 -218751344 + LTR33A LTR ERVL 1 401 -122 365 251 65 32 chr1 63443053 63443170 -218750494 + LTR33 LTR ERVL 281 404 -117 1311 78 45 0 chr1 63443170 63443349 -218750315 + MLT2A2 LTR ERVL 1 187 -266 * 1447 86 0 0 chr1 63443346 63443532 -218750132 + MLT2A1 LTR ERVL 219 404 -40 202 179 15 15 chr1 63443541 63443608 -218750056 + (TA)n Simple_repeat Simple_repeat 1 67 0 921 105 19 2 chr1 63443720 63443850 -218749814 - MLT2A1 LTR ERVL -40 475 280 777 51 0 0 chr1 63443848 63443946 -218749718 - MLT2A1 LTR ERVL -346 98 1 * 365 251 65 32 chr1 63443946 63444063 -218749601 - LTR33 LTR ERVL -117 404 281 538 167 15 0 chr1 63444161 63444366 -218749298 + (TA)n Simple_repeat Simple_repeat 1 208 0 5089 78 8 6 chr1 63444366 63445024 -218748640 + HERVL-A1 LTR ERVL 643 1301 -4353 33394 71 15 16 chr1 63445463 63449808 -218743856 + HERVL-A1 LTR ERVL 1312 5652 -2 3090 95 30 23 chr1 63449810 63450251 -218743413 + MLT2A1 LTR ERVL 1 444 0 454 296 72 0 chr1 63450902 63451054 -218742610 + MER103 DNA DNA 3 165 -1 2618 98 24 27 chr1 63451110 63451486 -218742178 - THE1C LTR MaLR 0 375 1 458 273 187 2 chr1 63451625 63451844 -218741820 + MIR SINE MIR 3 251 -11 180 111 0 0 chr1 63453318 63453345 -218740319 + (TA)n Simple_repeat Simple_repeat 1 27 0 754 230 70 16 chr1 63454121 63454308 -218739356 - L1PA16 LINE L1 -24 6142 5946 180 324 29 29 chr1 63454434 63454502 -218739162 + L2 LINE L2 2970 3037 -235 6913 82 11 6 chr1 63454639 63455870 -218737794 - L1PA10 LINE L1 -5 6163 4927 961 317 136 12 chr1 63455870 63456539 -218737125 + L2 LINE L2 1644 2395 -919 250 229 67 25 chr1 63457145 63457253 -218736411 - MIR SINE MIR -41 221 47 321 44 22 0 chr1 63457495 63457540 -218736124 + MADE1 DNA Mariner 35 80 0 291 325 0 43 chr1 63457890 63458007 -218735657 + L2 LINE L2 3139 3250 -22 263 255 46 59 chr1 63458147 63458300 -218735364 + MIR SINE MIR 79 229 -33 221 56 0 28 chr1 63458334 63458370 -218735294 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3329 41 0 3 chr1 63458370 63458761 -218734903 - L1PA3 LINE L1 -24 6131 5742 335 169 0 4 chr1 63458761 63458824 -218734840 - Alu SINE Alu -255 48 1 378 343 56 0 chr1 63459338 63459446 -218734218 - MER81 DNA DNA 0 114 1 1179 249 64 34 chr1 63459477 63459803 -218733861 + LTR16C LTR ERVL 148 483 -8 1363 182 32 122 chr1 63460125 63460526 -218733138 - MLT1A1 LTR MaLR 0 365 1 7711 225 45 33 chr1 63460526 63462239 -218731425 - MLT1A1-int LTR MaLR 0 1735 2 1330 198 28 104 chr1 63462240 63462635 -218731029 - MLT1A1 LTR MaLR 0 365 1 1278 219 108 31 chr1 63462925 63463250 -218730414 + MLT1F1 LTR MaLR 217 566 -1 944 223 30 0 chr1 63463963 63464129 -218729535 - FAM SINE Alu -4 171 1 2335 118 0 0 chr1 63464149 63464462 -218729202 - AluSq SINE Alu 0 313 1 21 0 0 0 chr1 63465091 63465112 -218728552 + AT_rich Low_complexity Low_complexity 1 21 0 194 262 24 0 chr1 63466862 63466904 -218726760 - L2 LINE L2 -10 3303 3261 352 314 107 30 chr1 63467320 63467591 -218726073 - L1M4 LINE L1 -940 5206 4915 512 252 126 103 chr1 63467764 63467950 -218725714 - L1M4 LINE L1 -1445 4701 4521 1787 141 0 47 chr1 63467950 63468270 -218725394 - AluSx SINE Alu 0 306 1 512 252 126 103 chr1 63468270 63468654 -218725010 - L1M4 LINE L1 -1625 4521 4117 457 292 65 90 chr1 63468782 63469008 -218724656 - MLT1I LTR MaLR 0 409 194 1903 173 49 35 chr1 63469008 63469377 -218724287 + MLT1A2 LTR MaLR 1 374 0 457 292 65 90 chr1 63469377 63469506 -218724158 - MLT1I LTR MaLR -215 194 63 435 336 28 83 chr1 63469606 63469966 -218723698 - L1MEd LINE L1 -5280 839 500 12228 152 57 22 chr1 63469997 63472325 -218721339 - L1M4c LINE L1 -3954 2430 21 22 0 0 0 chr1 63472970 63472992 -218720672 + AT_rich Low_complexity Low_complexity 1 22 0 279 302 54 8 chr1 63473199 63473328 -218720336 + L1ME LINE L1 567 701 -5933 1649 274 95 54 chr1 63473866 63475392 -218718272 + L1ME LINE L1 1144 2892 -3933 26716 114 103 67 chr1 63475421 63480531 -218713133 + L1P LINE L1 12 5305 -841 22 0 0 0 chr1 63680865 63680887 -218512777 + AT_rich Low_complexity Low_complexity 1 22 0 410 279 74 37 chr1 63680888 63681508 -218512156 + L1ME3A LINE L1 5376 6161 -9 241 100 0 0 chr1 63681964 63682004 -218511660 + L1MCc LINE L1 1296 1335 -5088 2612 122 35 5 chr1 63682041 63682474 -218511190 + L1MA4A LINE L1 5847 6292 -11 657 240 45 11 chr1 63682835 63683014 -218510650 + MLT1B LTR MaLR 1 185 -189 275 82 49 16 chr1 63683014 63683075 -218510589 + CT-rich Low_complexity Low_complexity 1 63 0 924 201 5 0 chr1 63683082 63683266 -218510398 + MLT1B LTR MaLR 206 390 0 406 325 60 52 chr1 63683316 63684029 -218509635 + L1MEd LINE L1 340 1058 -5061 472 263 76 35 chr1 63684050 63684221 -218509443 + L1MEd LINE L1 1034 1211 -4908 318 294 75 48 chr1 63684229 63684416 -218509248 + L1MB8 LINE L1 5531 5722 -448 300 213 228 0 chr1 63684420 63684547 -218509117 + L1MB8 LINE L1 5777 5932 -246 540 263 107 33 chr1 63684724 63685203 -218508461 - L1ME4a LINE L1 -202 5919 5351 1909 163 27 3 chr1 63685507 63685838 -218507826 + MER58B DNA MER1_type 3 341 0 2230 98 7 3 chr1 63686979 63687276 -218506388 + AluSp SINE Alu 1 298 -15 223 257 29 114 chr1 63687326 63687431 -218506233 - L2 LINE L2 0 3272 3177 * 1290 248 40 114 chr1 63687418 63687649 -218506015 - L2 LINE L2 -277 3036 2789 2434 41 0 14 chr1 63687649 63687940 -218505724 + AluY SINE Alu 25 311 0 1290 248 40 114 chr1 63687940 63688318 -218505346 - L2 LINE L2 -524 2789 2471 229 204 0 0 chr1 63688323 63688372 -218505292 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 394 369 92 21 chr1 63688374 63688916 -218504748 - L2 LINE L2 0 3272 2690 571 253 48 12 chr1 63689470 63689636 -218504028 + MIR SINE MIR 78 249 -13 320 292 64 113 chr1 63689797 63690143 -218503521 + L2 LINE L2 2934 3262 -10 364 313 97 21 chr1 63691746 63691890 -218501774 - MIR SINE MIR -77 185 31 220 298 12 36 chr1 63693098 63693182 -218500482 + L2 LINE L2 2566 2647 -667 907 259 42 4 chr1 63693864 63694100 -218499564 + MIR SINE MIR 18 262 0 220 373 16 24 chr1 63694243 63694369 -218499295 - MIR SINE MIR -118 144 20 1452 210 144 33 chr1 63695780 63696209 -218497455 - MLT1D LTR MaLR 0 505 29 301 307 115 23 chr1 63696429 63696647 -218497017 - MLT1K LTR MaLR -340 248 11 329 313 32 16 chr1 63697529 63697756 -218495908 - L3 LINE CR1 -2 1575 1301 247 284 88 10 chr1 63697866 63697968 -218495696 - MIR SINE MIR -47 215 106 726 326 69 28 chr1 63698251 63698641 -218495023 - L2 LINE L2 -357 2957 2552 358 313 45 0 chr1 63698733 63698845 -218494819 + MIR3 SINE MIR 41 157 -51 274 333 11 0 chr1 63699063 63699150 -218494514 + MIR SINE MIR 50 137 -125 755 272 58 54 chr1 63700299 63700781 -218492883 - MER113 DNA MER1_type? -34 487 4 208 352 80 35 chr1 63700822 63701021 -218492643 + MIR SINE MIR 47 254 -8 2405 101 0 0 chr1 63701022 63701330 -218492334 - AluSc SINE Alu -1 308 1 617 330 78 52 chr1 63701959 63702307 -218491357 + L2 LINE L2 2916 3272 0 307 329 133 0 chr1 63702316 63702474 -218491190 - ERVL LTR ERVL -4231 1533 1355 1200 177 37 1 chr1 63702535 63702796 -218490868 - L1MB5 LINE L1 0 6184 5911 25 108 0 0 chr1 63703295 63703397 -218490267 + AT_rich Low_complexity Low_complexity 1 102 0 198 0 0 0 chr1 63704200 63704222 -218489442 + (T)n Simple_repeat Simple_repeat 1 22 0 1278 279 42 100 chr1 63704488 63704583 -218489081 - L2 LINE L2 0 3272 3173 2063 83 0 11 chr1 63704583 63704847 -218488817 + AluSp SINE Alu 38 298 -15 1278 279 42 100 chr1 63704847 63705220 -218488444 - L2 LINE L2 -99 3173 2872 2447 45 0 7 chr1 63705220 63705509 -218488155 + AluY SINE Alu 25 311 0 1278 279 42 100 chr1 63705509 63705889 -218487775 - L2 LINE L2 -400 2872 2471 229 204 0 0 chr1 63705894 63705943 -218487721 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 394 369 92 21 chr1 63705945 63706487 -218487177 - L2 LINE L2 0 3272 2690 571 253 48 12 chr1 63707041 63707207 -218486457 + MIR SINE MIR 78 249 -13 320 292 64 113 chr1 63707368 63707714 -218485950 + L2 LINE L2 2934 3262 -10 492 277 94 40 chr1 63709177 63709505 -218484159 + L1ME3A LINE L1 2519 2864 -3282 22 0 0 0 chr1 63709591 63709613 -218484051 + AT_rich Low_complexity Low_complexity 1 22 0 410 279 74 37 chr1 63709614 63710234 -218483430 + L1ME3A LINE L1 5376 6161 -9 241 100 0 0 chr1 63710690 63710730 -218482934 + L1MCc LINE L1 1296 1335 -5088 2612 122 35 5 chr1 63710767 63711200 -218482464 + L1MA4A LINE L1 5847 6292 -11 657 240 45 11 chr1 63711561 63711740 -218481924 + MLT1B LTR MaLR 1 185 -189 275 82 49 16 chr1 63711740 63711801 -218481863 + CT-rich Low_complexity Low_complexity 1 63 0 924 201 5 0 chr1 63711808 63711992 -218481672 + MLT1B LTR MaLR 206 390 0 406 325 60 52 chr1 63712042 63712755 -218480909 + L1MEd LINE L1 340 1058 -5061 472 263 76 35 chr1 63712776 63712947 -218480717 + L1MEd LINE L1 1034 1211 -4908 318 294 75 48 chr1 63712955 63713142 -218480522 + L1MB8 LINE L1 5531 5722 -448 300 213 228 0 chr1 63713146 63713273 -218480391 + L1MB8 LINE L1 5777 5932 -246 540 261 107 33 chr1 63713450 63713929 -218479735 - L1ME4a LINE L1 -202 5919 5351 1909 163 27 3 chr1 63714233 63714564 -218479100 + MER58B DNA MER1_type 3 341 0 2211 108 3 0 chr1 63715705 63715992 -218477672 + AluSp SINE Alu 1 288 -25 1499 221 21 0 chr1 63716480 63716761 -218476903 + AluSx SINE Alu 1 287 -25 215 97 0 0 chr1 63716763 63716794 -218476870 + (GGAGAA)n Simple_repeat Simple_repeat 1 31 0 661 181 0 19 chr1 63716794 63716954 -218476710 + G-rich Low_complexity Low_complexity 1 157 0 479 17 17 0 chr1 63717039 63717099 -218476565 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 290 343 110 0 chr1 63717975 63718121 -218475543 + MIR SINE MIR 63 224 -38 297 296 217 0 chr1 63718340 63718455 -218475209 + L2 LINE L2 3133 3272 0 2102 101 3 14 chr1 63719019 63719307 -218474357 - AluSx SINE Alu -15 297 13 661 259 209 8 chr1 63719995 63720131 -218473533 - L2 LINE L2 -1 3312 3205 218 79 0 26 chr1 63720131 63720169 -218473495 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 661 259 209 8 chr1 63720169 63720295 -218473369 - L2 LINE L2 -108 3205 2997 199 333 67 0 chr1 63720410 63720470 -218473194 - L2 LINE L2 -188 3084 3021 440 282 8 17 chr1 63721571 63721688 -218471976 - MIR SINE MIR -56 152 37 208 237 220 0 chr1 63722290 63722349 -218471315 - L2 LINE L2 0 3313 3242 292 312 80 40 chr1 63722368 63722493 -218471171 - L2 LINE L2 -5 3267 3138 464 328 39 6 chr1 63723779 63723959 -218469705 - LTR16C LTR ERVL -1 490 305 330 369 76 10 chr1 63724445 63724643 -218469021 + MIR SINE MIR 3 213 -49 1927 143 32 0 chr1 63725334 63725649 -218468015 - MSTA LTR MaLR -103 325 1 361 313 81 0 chr1 63726271 63726450 -218467214 - MIR SINE MIR -59 203 16 283 341 0 0 chr1 63726597 63726679 -218466985 - L3 LINE CR1 -5 1572 1491 625 291 24 33 chr1 63726857 63727067 -218466597 - MIR SINE MIR -41 221 14 223 190 86 17 chr1 63727094 63727152 -218466512 - L3 LINE CR1 -514 1063 1002 229 326 90 0 chr1 63727587 63727676 -218465988 - MIR3 SINE MIR -43 165 69 258 315 141 24 chr1 63727783 63727989 -218465675 - MIR SINE MIR -13 249 12 182 170 0 21 chr1 63728004 63728051 -218465613 + CT-rich Low_complexity Low_complexity 1 46 0 195 299 179 67 chr1 63728051 63728200 -218465464 + L2 LINE L2 2368 2499 -815 2227 93 0 0 chr1 63728200 63728518 -218465146 + AluY SINE Alu 1 318 0 195 299 179 67 chr1 63728518 63728741 -218464923 + L2 LINE L2 2499 2783 -531 904 251 107 50 chr1 63728762 63729125 -218464539 - MSTD LTR MaLR -12 384 1 7078 68 142 3 chr1 63729140 63730213 -218463451 - MER11B LTR ERVK -14 1222 1 342 319 18 9 chr1 63730507 63730620 -218463044 + L2 LINE L2 3182 3295 -18 192 97 0 0 chr1 63730625 63730656 -218463008 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 264 297 0 0 chr1 63731089 63731153 -218462511 - MIR3 SINE MIR -22 186 123 370 299 103 54 chr1 63731157 63731579 -218462085 + L1MEd LINE L1 12 449 -5670 459 226 151 70 chr1 63731929 63732128 -218461536 + MER58C DNA MER1_type 1 215 0 26 74 0 0 chr1 63732805 63732859 -218460805 + AT_rich Low_complexity Low_complexity 1 54 0 213 293 38 38 chr1 63733129 63733235 -218460429 - MIR SINE MIR -78 130 25 413 329 38 52 chr1 63733394 63733604 -218460060 + MIR SINE MIR 45 251 -11 874 216 62 0 chr1 63733899 63734093 -218459571 + MER58A DNA MER1_type 19 224 0 244 327 19 10 chr1 63734693 63734797 -218458867 - L2 LINE L2 -457 2857 2753 579 249 174 9 chr1 63734923 63735341 -218458323 + LTR33A LTR ERVL 32 519 -4 275 310 14 0 chr1 63735385 63735456 -218458208 + L2 LINE L2 3196 3267 -5 374 313 67 0 chr1 63736242 63736376 -218457288 + MIR SINE MIR 104 246 -16 245 289 193 26 chr1 63736973 63737087 -218456577 + MIR3 SINE MIR 8 140 -68 205 188 42 21 chr1 63737525 63737573 -218456091 + GA-rich Low_complexity Low_complexity 2 50 0 313 351 160 0 chr1 63737738 63737926 -218455738 + MIR SINE MIR 20 237 -25 384 77 0 0 chr1 63738877 63738929 -218454735 + (TA)n Simple_repeat Simple_repeat 1 52 0 524 304 53 25 chr1 63739020 63739263 -218454401 - MIR SINE MIR 0 262 13 35 24 0 0 chr1 63739701 63739743 -218453921 + AT_rich Low_complexity Low_complexity 1 42 0 369 262 176 21 chr1 63739755 63739942 -218453722 - MIR SINE MIR -5 257 42 245 186 0 0 chr1 63740569 63740612 -218453052 + T-rich Low_complexity Low_complexity 3 45 0 374 186 12 0 chr1 63740613 63740699 -218452965 + CT-rich Low_complexity Low_complexity 1 87 0 422 254 18 35 chr1 63742220 63742334 -218451330 - MER5A DNA MER1_type -53 136 25 9386 159 24 4 chr1 63742736 63744835 -218448829 + L1PA14 LINE L1 1 2668 -4913 * 16737 181 10 13 chr1 63744829 63745044 -218448620 + L1PA14 LINE L1 3071 3285 -4314 2232 112 0 3 chr1 63745044 63745347 -218448317 + AluSc SINE Alu 1 302 -7 16737 181 10 13 chr1 63745347 63745511 -218448153 + L1PA14 LINE L1 3285 3448 -4151 1938 145 0 0 chr1 63745511 63745793 -218447871 + AluSx SINE Alu 1 282 -30 303 28 0 0 chr1 63745796 63745832 -218447832 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 2321 115 0 6 chr1 63745833 63746145 -218447519 + AluSg SINE Alu 1 310 0 16737 181 10 13 chr1 63746145 63750289 -218443375 + L1PA14 LINE L1 3449 7583 -16 704 316 68 0 chr1 63750308 63750545 -218443119 - MIR SINE MIR -2 260 8 427 224 98 7 chr1 63750553 63750696 -218442968 - MER103 DNA DNA -10 156 1 507 206 108 0 chr1 63750886 63750988 -218442676 - MER5A DNA MER1_type -76 113 1 181 314 0 0 chr1 63750993 63751044 -218442620 + MIR SINE MIR 88 138 -70 484 252 34 0 chr1 63751064 63751183 -218442481 - L2 LINE L2 0 3313 3191 233 266 241 0 chr1 63751738 63751817 -218441847 - L2 LINE L2 -1 3271 3174 203 360 72 8 chr1 63751811 63751936 -218441728 + L2 LINE L2 3181 3313 0 * 25 0 0 0 chr1 63752384 63752409 -218441255 + AT_rich Low_complexity Low_complexity 1 25 0 411 250 39 23 chr1 63752435 63752563 -218441101 + Charlie8 DNA MER1_type 127 256 -2161 6019 125 87 48 chr1 63752670 63753855 -218439809 - Tigger3b DNA MER2_type 0 1231 1 1253 126 53 5 chr1 63754296 63754503 -218439161 - THE1A LTR MaLR 0 355 139 1017 117 9 7 chr1 63754769 63754926 -218438738 - THE1A LTR MaLR -214 141 1 12040 88 5 0 chr1 63754926 63756499 -218437165 - THE1A-int LTR MaLR 0 1580 1 2207 127 11 3 chr1 63756501 63756848 -218436816 - THE1A LTR MaLR -5 350 1 312 309 73 8 chr1 63757043 63757166 -218436498 - MIR3 SINE MIR -15 193 63 536 107 0 0 chr1 63757167 63757251 -218436413 + MSTA LTR MaLR 1 84 -344 3312 73 2 0 chr1 63757261 63757697 -218435967 - LTR3b LTR ERVK 0 437 1 1841 137 58 12 chr1 63757697 63758029 -218435635 + MSTA LTR MaLR 81 428 0 2099 125 0 0 chr1 63758670 63758959 -218434705 - AluSx SINE Alu -23 289 1 2682 236 16 0 chr1 63759087 63759697 -218433967 - MER82 DNA MER2_type -9 644 25 949 283 31 17 chr1 63759733 63760026 -218433638 + L2 LINE L2 3017 3313 0 2729 121 34 2 chr1 63760042 63760457 -218433207 + MSTA LTR MaLR 1 428 0 1477 200 121 88 chr1 63760825 63761361 -218432303 + MLT2B3 LTR ERVL 1 554 0 297 328 94 8 chr1 63761926 63762054 -218431610 - MIR SINE MIR -122 140 2 242 349 43 0 chr1 63762338 63762441 -218431223 - MIR SINE MIR -64 144 48 301 354 44 25 chr1 63763376 63763534 -218430130 - MIR SINE MIR -50 212 52 21 36 0 0 chr1 63763666 63763694 -218429970 + AT_rich Low_complexity Low_complexity 1 28 0 1801 176 0 14 chr1 63763694 63763984 -218429680 + AluJb SINE Alu 17 302 -10 763 283 48 4 chr1 63764028 63764279 -218429385 + MIR SINE MIR 1 262 0 630 257 20 52 chr1 63764291 63764540 -218429124 + Charlie8 DNA MER1_type 19 259 -2158 1536 179 124 101 chr1 63765205 63765802 -218427862 + MER4B-int LTR ERV1 5466 6076 -682 1866 144 79 3 chr1 63765802 63766142 -218427522 + LTR47A LTR ERVL 1 366 -86 250 330 195 27 chr1 63766413 63766634 -218427030 + L2 LINE L2 3005 3262 -10 25 0 0 0 chr1 63767356 63767381 -218426283 + AT_rich Low_complexity Low_complexity 1 25 0 484 314 58 23 chr1 63768024 63768333 -218425331 - LTR16C LTR ERVL 0 491 172 791 331 31 16 chr1 63768586 63769009 -218424655 - ERVL LTR ERVL -461 5303 4875 271 331 68 15 chr1 63769071 63769204 -218424460 - LTR16C LTR ERVL 0 491 352 181 260 151 0 chr1 63769855 63769928 -218423736 + MIR3 SINE MIR 10 93 -115 478 182 224 7 chr1 63770063 63770206 -218423458 - MLT1B LTR MaLR -216 174 1 1546 78 16 47 chr1 63770408 63770664 -218423000 - L1PA8 LINE L1 0 6172 5925 4952 71 22 0 chr1 63770664 63771463 -218422201 + L1PA8 LINE L1 5143 5954 -177 220 167 21 21 chr1 63771645 63771693 -218421971 + CT-rich Low_complexity Low_complexity 4 51 0 371 348 43 0 chr1 63772443 63772607 -218421057 + MIR3 SINE MIR 38 208 0 1734 219 31 6 chr1 63772740 63773096 -218420568 - MLT1A1 LTR MaLR 0 365 1 1944 160 19 11 chr1 63773101 63773470 -218420194 - MLT1A1-int LTR MaLR -6 1729 1358 794 238 0 0 chr1 63773472 63773632 -218420032 - FRAM SINE Alu -16 160 1 4895 235 54 12 chr1 63773634 63774909 -218418755 - MLT1A1-int LTR MaLR -372 1363 1 1602 236 28 0 chr1 63774912 63775264 -218418400 - MLT1A1 LTR MaLR -3 362 1 238 218 0 18 chr1 63776644 63776699 -218416965 + CT-rich Low_complexity Low_complexity 1 54 0 1189 199 83 57 chr1 63777707 63777754 -218415910 - MLT2C1 LTR ERVL 0 397 353 845 74 8 0 chr1 63777754 63777876 -218415788 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 1189 199 83 57 chr1 63777876 63778215 -218415449 - MLT2C1 LTR ERVL -44 353 1 482 69 69 0 chr1 63779585 63779657 -218414007 - Tigger1 DNA MER2_type -1500 918 842 217 298 0 18 chr1 63780075 63780132 -218413532 - L2 LINE L2 -211 3061 3006 24 53 0 0 chr1 63780266 63780304 -218413360 + AT_rich Low_complexity Low_complexity 1 38 0 6065 125 44 5 chr1 63780544 63781559 -218412105 - Tigger1 DNA MER2_type 0 2418 1364 202 29 57 0 chr1 63781560 63781595 -218412069 + (TA)n Simple_repeat Simple_repeat 2 38 0 6952 39 7 1 chr1 63781595 63782917 -218410747 - L1PA5 LINE L1 -20 6134 4808 5977 37 0 3 chr1 63782919 63783681 -218409983 + L1PA5 LINE L1 4061 4820 -1326 8455 122 26 2 chr1 63783681 63785024 -218408640 - Tigger1 DNA MER2_type -1043 1375 1 258 156 0 0 chr1 63785058 63785103 -218408561 + (TA)n Simple_repeat Simple_repeat 2 46 0 359 386 27 46 chr1 63786107 63786366 -218407298 - L2 LINE L2 0 3272 3019 313 293 121 0 chr1 63786568 63786708 -218406956 + MIR SINE MIR 70 226 -36 250 338 0 53 chr1 63787625 63787758 -218405906 - L2 LINE L2 -233 3039 2914 205 336 36 18 chr1 63787821 63787931 -218405733 - MIR SINE MIR -111 151 40 367 321 45 93 chr1 63788313 63788603 -218405061 - L2 LINE L2 0 3272 2997 2557 187 35 20 chr1 63788606 63788806 -218404858 + L1MC4 LINE L1 6971 7167 -875 1333 177 46 67 chr1 63788806 63789179 -218404485 + MLT1A1 LTR MaLR 1 365 0 2557 187 35 20 chr1 63789179 63789614 -218404050 + L1MC4 LINE L1 7167 7615 -427 21 0 0 0 chr1 63789625 63789646 -218404018 + AT_rich Low_complexity Low_complexity 1 21 0 413 303 26 19 chr1 63789736 63789891 -218403773 - MIR SINE MIR -12 250 95 922 264 91 29 chr1 63790252 63790635 -218403029 - MLT1I LTR MaLR 0 409 3 208 323 0 16 chr1 63790665 63790727 -218402937 - L2 LINE L2 -9 3263 3203 196 277 0 0 chr1 63790825 63790872 -218402792 - MIR3 SINE MIR -54 154 108 285 329 91 14 chr1 63791405 63791548 -218402116 + MIR SINE MIR 20 173 -89 338 300 64 39 chr1 63791844 63792077 -218401587 - MLT1J1 LTR MaLR -153 293 55 190 218 73 18 chr1 63792911 63792966 -218400698 - MIR SINE MIR -80 182 125 487 120 46 0 chr1 63793038 63793146 -218400518 + (TCTA)n Simple_repeat Simple_repeat 2 114 0 645 257 91 0 chr1 63793150 63793325 -218400339 - MIR SINE MIR -70 192 2 375 287 175 18 chr1 63793900 63794101 -218399563 - MIR SINE MIR -33 229 3 327 264 44 44 chr1 63794813 63794972 -218398692 + MIR SINE MIR 75 233 -29 337 203 59 42 chr1 63796885 63797003 -218396661 - MLT1H LTR MaLR 0 549 430 246 272 40 40 chr1 63797175 63797300 -218396364 - MLT1I LTR MaLR -284 125 1 207 0 0 0 chr1 63797852 63797875 -218395789 + (CAA)n Simple_repeat Simple_repeat 2 24 0 849 182 0 6 chr1 63799128 63799309 -218394355 - L1MCa LINE L1 -5375 1051 872 626 325 40 53 chr1 63800016 63800318 -218393346 + L2 LINE L2 2965 3262 -10 213 213 0 0 chr1 63800372 63800419 -218393245 + GA-rich Low_complexity Low_complexity 2 48 0 231 261 0 0 chr1 63800626 63800672 -218392992 - MIR3 SINE MIR -48 160 115 339 254 191 46 chr1 63801083 63801256 -218392408 - MIR SINE MIR -34 228 31 203 307 189 8 chr1 63802144 63802271 -218391393 - MIR SINE MIR -40 222 73 274 400 118 8 chr1 63802608 63802981 -218390683 - L2 LINE L2 -50 3222 2809 410 289 92 13 chr1 63803159 63803387 -218390277 - MLT1L LTR MaLR -2 613 368 293 275 93 14 chr1 63804408 63804560 -218389104 + MIR3 SINE MIR 1 170 -64 202 244 0 0 chr1 63804655 63804696 -218388968 + L2 LINE L2 3265 3305 -8 200 352 80 16 chr1 63804742 63804867 -218388797 + MIR SINE MIR 97 229 -33 248 314 153 8 chr1 63805004 63805122 -218388542 + MIR3 SINE MIR 41 175 -33 207 0 0 0 chr1 63805162 63805185 -218388479 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2107 145 0 0 chr1 63806232 63806535 -218387129 + AluSx SINE Alu 1 303 -9 547 249 11 57 chr1 63806896 63807073 -218386591 - MIR SINE MIR -70 192 24 548 326 87 9 chr1 63808645 63808875 -218384789 - MIR SINE MIR -6 256 9 570 303 55 0 chr1 63809568 63809733 -218383931 - MIR SINE MIR -66 196 23 31 0 0 0 chr1 63810032 63810063 -218383601 + AT_rich Low_complexity Low_complexity 1 31 0 1018 251 124 39 chr1 63810067 63810454 -218383210 - LTR16A LTR ERVL 0 450 31 318 338 10 10 chr1 63810543 63810659 -218383005 - MIR SINE MIR -72 136 20 631 164 18 88 chr1 63811038 63811209 -218382455 + Charlie1 DNA MER1_type 1461 1619 -1142 * 3647 168 38 68 chr1 63811206 63811675 -218381989 + Charlie1 DNA MER1_type 1792 2274 -487 2501 77 0 0 chr1 63811675 63811972 -218381692 - AluY SINE Alu -14 297 1 3647 168 38 68 chr1 63811972 63812501 -218381163 + Charlie1 DNA MER1_type 2274 2760 -1 251 302 118 53 chr1 63812789 63812958 -218380706 - MIR SINE MIR -76 186 7 314 282 32 96 chr1 63812963 63813119 -218380545 - MIR3 SINE MIR -47 161 16 231 298 119 112 chr1 63813377 63813780 -218379884 - L2 LINE L2 -5 3267 2862 263 274 0 60 chr1 63813999 63814083 -218379581 + L2 LINE L2 3194 3272 0 290 304 130 9 chr1 63815512 63815627 -218378037 - L2 LINE L2 -6 3266 3138 392 332 102 73 chr1 63815671 63816420 -218377244 + L2 LINE L2 2199 2968 -346 1254 345 9 0 chr1 63816843 63817289 -218376375 + ERVL LTR ERVL 4242 4691 -1073 543 330 54 35 chr1 63817286 63817713 -218375951 + ERVL LTR ERVL 4843 5277 -487 * 410 223 54 27 chr1 63818147 63818259 -218375405 + MIR SINE MIR 40 154 -108 1794 125 46 18 chr1 63818657 63818959 -218374705 + AluSx SINE Alu 1 310 0 769 287 73 19 chr1 63819084 63819509 -218374155 + L1ME LINE L1 4489 4936 -1210 180 77 0 0 chr1 63819517 63819543 -218374121 + (TA)n Simple_repeat Simple_repeat 2 27 0 603 264 67 49 chr1 63819631 63820227 -218373437 + L1ME LINE L1 5119 5723 -447 2411 103 41 11 chr1 63820350 63820719 -218372945 + L1PA11 LINE L1 5794 6173 -1 2350 92 7 0 chr1 63820880 63821175 -218372489 - AluSp SINE Alu -16 297 1 1176 278 44 38 chr1 63821470 63822150 -218371514 - L1MDb LINE L1 -5026 1044 361 1792 193 3 0 chr1 63822294 63822589 -218371075 + AluSx SINE Alu 1 296 -16 2186 126 3 0 chr1 63822646 63822948 -218370716 + AluSx SINE Alu 1 303 -9 19193 48 53 7 chr1 63822970 63825585 -218368079 + L1P LINE L1 2 2739 -3407 5028 29 0 0 chr1 63825585 63826298 -218367366 + L1PA3 LINE L1 5569 6288 0 1338 278 66 13 chr1 63826791 63827245 -218366419 + LTR16C LTR ERVL 11 488 -3 504 273 100 15 chr1 63827299 63827478 -218366186 + MIR SINE MIR 9 196 -60 243 321 0 24 chr1 63827920 63828004 -218365660 - MIR3 SINE MIR -11 197 116 433 373 128 7 chr1 63828032 63828338 -218365326 + L3 LINE CR1 1232 1574 -3 435 355 49 34 chr1 63828697 63829105 -218364559 + LTR16B LTR ERVL 39 452 -12 1285 211 164 31 chr1 63829585 63830006 -218363658 - MLT1F LTR MaLR -63 479 3 240 239 415 0 chr1 63830007 63830137 -218363527 - MIR SINE MIR -77 185 2 344 264 92 39 chr1 63830289 63830466 -218363198 - MIR SINE MIR -58 150 6 1080 220 78 33 chr1 63830614 63831009 -218362655 - L1ME3A LINE L1 0 6170 5758 1524 217 39 0 chr1 63831010 63831342 -218362322 + Cheshire DNA MER1_type 2 346 -2074 318 164 149 0 chr1 63831340 63831407 -218362257 + Cheshire DNA MER1_type 2344 2420 0 * 1072 206 76 10 chr1 63831409 63831710 -218361954 - L1ME3A LINE L1 -407 5763 5443 304 270 151 24 chr1 63831801 63831927 -218361737 - MIR SINE MIR -119 143 2 908 226 46 14 chr1 63832934 63833151 -218360513 - MER58A DNA MER1_type 0 224 1 724 315 56 8 chr1 63833801 63834068 -218359596 - MLT1I LTR MaLR -19 390 111 689 322 27 17 chr1 63834230 63834528 -218359136 + MLT1I LTR MaLR 91 391 -18 1901 163 15 36 chr1 63834725 63835118 -218358546 - MLT1B LTR MaLR 0 390 6 2330 157 23 5 chr1 63835503 63835930 -218357734 - Tigger1 DNA MER2_type 0 2418 1984 5688 152 23 5 chr1 63835935 63837243 -218356421 - L1MA5A LINE L1 0 6297 4963 10531 129 23 1 chr1 63837248 63838965 -218354699 - Tigger1 DNA MER2_type -450 1968 214 196 284 45 0 chr1 63839229 63839296 -218354368 + MIR SINE MIR 82 151 -111 16986 131 29 17 chr1 63839307 63842146 -218351518 + L1PBa LINE L1 1 2804 -4058 2294 93 3 13 chr1 63842146 63842458 -218351206 + AluSc SINE Alu 1 309 0 16986 131 29 17 chr1 63842458 63842651 -218351013 + L1PBa LINE L1 2804 2993 -3869 2252 115 0 3 chr1 63842651 63842963 -218350701 + AluY SINE Alu 1 311 0 16986 131 29 17 chr1 63842963 63843309 -218350355 + L1PBa LINE L1 2993 3429 -3433 3521 206 4 14 chr1 63843316 63844401 -218349263 - L1P5 LINE L1 -659 5492 4419 1211 138 0 0 chr1 63844412 63844607 -218349057 - AluSg/x SINE Alu 0 308 114 1605 101 16 12 chr1 63844607 63844865 -218348799 - L1P4 LINE L1 -535 5631 5373 4406 206 15 8 chr1 63844865 63845911 -218347753 + L1P4 LINE L1 4303 5356 -790 574 285 84 45 chr1 63845922 63846326 -218347338 - L1ME LINE L1 -5601 469 50 21 0 0 0 chr1 63846596 63846617 -218347047 + AT_rich Low_complexity Low_complexity 1 21 0 352 299 87 8 chr1 63846979 63847106 -218346558 - MIR SINE MIR -21 241 105 183 37 37 0 chr1 63847814 63847841 -218345823 - L2 LINE L2 -14 3299 3272 243 241 76 0 chr1 63848274 63848353 -218345311 - L1ME4a LINE L1 -66 6055 5971 335 270 56 34 chr1 63848439 63848617 -218345047 - L1ME4a LINE L1 -4 6117 5936 1827 153 32 0 chr1 63848748 63849029 -218344635 - AluSx SINE Alu -22 290 1 232 289 26 0 chr1 63849392 63849468 -218344196 - MIR SINE MIR -1 261 184 352 309 108 49 chr1 63849784 63850072 -218343592 - L2 LINE L2 -416 2898 2594 204 313 15 0 chr1 63850177 63850244 -218343420 - L2 LINE L2 -1736 1578 1511 265 256 26 0 chr1 63850310 63850388 -218343276 + MLT1K LTR MaLR 167 246 -342 869 364 64 34 chr1 63850848 63851816 -218341848 - L2 LINE L2 -2128 1186 190 1595 167 0 0 chr1 63851905 63852255 -218341409 + AluSx SINE Alu 38 387 0 208 245 0 0 chr1 63852541 63852590 -218341074 + (TTG)n Simple_repeat Simple_repeat 1 49 0 275 235 71 12 chr1 63852612 63852697 -218340967 + MIR3 SINE MIR 114 203 -5 22 35 0 0 chr1 63853289 63853318 -218340346 + AT_rich Low_complexity Low_complexity 1 29 0 357 24 0 0 chr1 63853380 63853422 -218340242 + (CA)n Simple_repeat Simple_repeat 1 42 0 218 290 29 0 chr1 63853438 63853507 -218340157 - MIR SINE MIR -111 151 81 9120 165 22 7 chr1 63854536 63857037 -218336627 - L1PA12 LINE L1 0 6168 3620 2009 71 8 0 chr1 63857109 63857375 -218336289 - L1PA7 LINE L1 0 6154 5887 287 287 71 29 chr1 63857563 63857691 -218335973 - MIR SINE MIR -68 140 6 1146 142 16 21 chr1 63857903 63858093 -218335571 + MER5A DNA MER1_type 1 189 0 247 273 30 20 chr1 63858129 63858228 -218335436 - MER117 DNA MER1_type -91 106 7 199 333 58 25 chr1 63859069 63859189 -218334475 + MIR SINE MIR 30 153 -109 250 354 51 53 chr1 63859359 63859491 -218334173 + L2 LINE L2 794 925 -2389 1942 112 34 0 chr1 63859491 63859759 -218333905 - AluSq SINE Alu -36 277 1 250 354 51 53 chr1 63859759 63860231 -218333433 + L2 LINE L2 925 1448 -1866 4661 165 21 23 chr1 63860231 63861811 -218331853 + L1PA16 LINE L1 4534 6110 -56 276 344 198 43 chr1 63861987 63862824 -218330840 + L2 LINE L2 1746 2712 -602 183 282 0 0 chr1 63862836 63862875 -218330789 - L2 LINE L2 -18 3295 3257 192 254 0 90 chr1 63863253 63863320 -218330344 + L2 LINE L2 3179 3239 -33 544 267 0 0 chr1 63863320 63863440 -218330224 + MER58A DNA MER1_type 1 120 0 1796 166 16 19 chr1 63863500 63863813 -218329851 + AluJo SINE Alu 1 312 0 1032 200 45 121 chr1 63863853 63864273 -218329391 + MLT1B LTR MaLR 1 388 -2 203 212 0 30 chr1 63864299 63864365 -218329299 + (TTA)n Simple_repeat Simple_repeat 2 65 0 28 29 0 0 chr1 63864416 63864451 -218329213 + AT_rich Low_complexity Low_complexity 1 35 0 189 330 9 66 chr1 63864564 63864670 -218328994 - MIR SINE MIR -111 151 52 287 381 0 0 chr1 63864737 63864842 -218328822 + MIR SINE MIR 23 127 -135 1221 290 62 30 chr1 63864868 63865365 -218328299 - LTR33 LTR ERVL -6 515 3 512 358 63 48 chr1 63866148 63866419 -218327245 - L2 LINE L2 -2 3270 2996 264 380 19 0 chr1 63866526 63866634 -218327030 - MIR SINE MIR -121 141 32 276 350 51 7 chr1 63866844 63866981 -218326683 - L2 LINE L2 -593 2721 2579 262 236 236 7 chr1 63867049 63867189 -218326475 - MIR3 SINE MIR -4 204 33 2316 106 0 0 chr1 63867693 63868005 -218325659 - AluSx SINE Alu 0 312 1 322 325 44 12 chr1 63868843 63869003 -218324661 - LTR16C LTR ERVL 0 491 327 1350 231 40 40 chr1 63869143 63869563 -218324101 - LTR16C LTR ERVL 0 491 72 427 59 15 15 chr1 63870093 63870161 -218323503 + (TA)n Simple_repeat Simple_repeat 2 69 0 572 338 69 11 chr1 63871376 63872000 -218321664 - L1ME3A LINE L1 -218 5952 5293 366 23 0 0 chr1 63872017 63872060 -218321604 + (TG)n Simple_repeat Simple_repeat 2 44 0 386 265 53 8 chr1 63872060 63872192 -218321472 - L1ME3A LINE L1 -879 5267 5130 1335 96 0 11 chr1 63872212 63872390 -218321274 + AluSg/x SINE Alu 123 298 -12 243 235 0 0 chr1 63872554 63872605 -218321059 + L2 LINE L2 3210 3260 -12 446 262 33 0 chr1 63872724 63872846 -218320818 - MIR SINE MIR -74 188 63 311 176 0 88 chr1 63873631 63873722 -218319942 + MIR SINE MIR 119 201 -61 516 188 49 40 chr1 63873889 63874045 -218319619 + MSTC LTR MaLR 1 183 -274 * 602 152 15 36 chr1 63874042 63874188 -218319476 + MSTC LTR MaLR 296 428 0 575 241 125 54 chr1 63874535 63874819 -218318845 - MLT1H LTR MaLR -169 398 119 2277 114 0 0 chr1 63874819 63875118 -218318546 - AluSx SINE Alu -13 299 1 575 241 125 54 chr1 63875118 63875241 -218318423 - MLT1H LTR MaLR -448 119 6 1087 265 106 53 chr1 63875342 63875795 -218317869 - MLT1F LTR MaLR -6 536 60 270 302 12 0 chr1 63877039 63877125 -218316539 - MLT1H1-int LTR MaLR -1280 91 5 346 257 162 33 chr1 63877134 63877344 -218316320 - MLT1H1 LTR MaLR -7 548 312 950 221 33 5 chr1 63877360 63877573 -218316091 + MER20 DNA MER1_type 1 219 0 293 238 154 10 chr1 63877576 63877726 -218315938 - MIR SINE MIR -49 213 1 393 312 111 33 chr1 63878503 63878901 -218314763 - MLT1L LTR MaLR 0 615 187 230 257 29 0 chr1 63878946 63879016 -218314648 - MLT1L LTR MaLR -416 199 128 251 230 14 68 chr1 63879604 63879678 -218313986 - MIR3 SINE MIR -52 156 87 877 321 81 18 chr1 63879693 63880139 -218313525 - L3 LINE CR1 -293 1284 811 799 268 14 92 chr1 63880220 63880590 -218313074 - MER102b DNA MER1_type 0 341 1 318 341 0 0 chr1 63880722 63880813 -218312851 - MIR3 SINE MIR -21 187 97 854 169 12 137 chr1 63880918 63881167 -218312497 - MER20 DNA MER1_type 0 219 2 302 326 59 44 chr1 63881167 63881292 -218312372 - MIR3 SINE MIR -43 165 36 476 257 28 78 chr1 63881382 63881561 -218312103 + MIR SINE MIR 2 171 -91 252 86 0 0 chr1 63881577 63881612 -218312052 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1298 236 43 6 chr1 63881623 63881949 -218311715 + MER58B DNA MER1_type 3 340 -1 278 340 47 28 chr1 63882565 63882671 -218310993 - L2 LINE L2 -8 3264 3157 313 274 69 80 chr1 63884747 63884922 -218308742 - MIR3 SINE MIR -21 187 15 2414 56 0 0 chr1 63885393 63885713 -218307951 - AluY SINE Alu 0 320 1 22 0 0 0 chr1 63885726 63885748 -218307916 + AT_rich Low_complexity Low_complexity 1 22 0 234 148 0 0 chr1 63885748 63885802 -218307862 + (A)n Simple_repeat Simple_repeat 1 54 0 191 276 73 73 chr1 63886012 63886135 -218307529 + MIR SINE MIR 24 146 -62 662 170 85 13 chr1 63887014 63887167 -218306497 - MER96B DNA MER1_type? -1 416 253 25 0 0 0 chr1 63887394 63887419 -218306245 + AT_rich Low_complexity Low_complexity 1 25 0 261 236 0 0 chr1 63887820 63887875 -218305789 + CT-rich Low_complexity Low_complexity 2 56 0 1532 242 104 23 chr1 63887936 63888416 -218305248 - LTR33 LTR ERVL 0 521 3 214 175 0 0 chr1 63888596 63888636 -218305028 + (ATGGTG)n Simple_repeat Simple_repeat 3 42 0 365 254 11 22 chr1 63888647 63888828 -218304836 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 465 316 98 0 chr1 63889315 63889489 -218304175 - MIR SINE MIR -16 246 56 23 0 0 0 chr1 63889519 63889542 -218304122 + AT_rich Low_complexity Low_complexity 1 23 0 262 268 85 46 chr1 63889596 63889749 -218303915 - L2 LINE L2 -219 3053 2895 2376 92 0 0 chr1 63889883 63890186 -218303478 - AluSg SINE Alu -7 303 1 223 246 14 29 chr1 63891137 63891206 -218302458 + MIR SINE MIR 81 148 -114 2030 136 4 0 chr1 63891435 63891715 -218301949 + AluSq SINE Alu 1 281 -32 479 39 0 69 chr1 63891728 63891830 -218301834 + (TA)n Simple_repeat Simple_repeat 1 95 0 458 341 216 19 chr1 63891980 63892042 -218301622 - L2 LINE L2 0 3313 3264 282 116 0 0 chr1 63892042 63892085 -218301579 + (TA)n Simple_repeat Simple_repeat 1 43 0 458 341 216 19 chr1 63892085 63892791 -218300873 - L2 LINE L2 -49 3264 2382 1989 121 0 7 chr1 63893046 63893355 -218300309 + AluSg1 SINE Alu 1 307 0 217 246 46 15 chr1 63893721 63893786 -218299878 + L2 LINE L2 3230 3296 -17 201 338 100 0 chr1 63893828 63893908 -218299756 - L2 LINE L2 -30 3242 3155 21 0 0 0 chr1 63894035 63894056 -218299608 + AT_rich Low_complexity Low_complexity 1 21 0 280 205 111 60 chr1 63894741 63894858 -218298806 - MIR3 SINE MIR -2 206 84 * 431 275 46 52 chr1 63894821 63895041 -218298623 + MIR3 SINE MIR 10 226 -36 280 57 0 0 chr1 63895378 63895413 -218298251 - U2 snRNA snRNA -153 35 1 2056 137 19 22 chr1 63895707 63896073 -218297591 + L1MB1 LINE L1 5803 6167 -1 5326 124 11 0 chr1 63896828 63897665 -218295999 - L1PA15 LINE L1 -1 6164 5319 680 96 17 9 chr1 63897668 63897783 -218295881 - L1P4 LINE L1 -731 5434 5319 * 4589 172 14 29 chr1 63897779 63898969 -218294695 - L1P4 LINE L1 -722 5443 4276 221 73 0 24 chr1 63899072 63899113 -218294551 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 340 257 44 87 chr1 63899200 63899406 -218294258 + MER102b DNA MER1_type 144 340 -1 225 298 0 32 chr1 63899620 63899714 -218293950 + GA-rich Low_complexity Low_complexity 5 95 0 252 315 0 45 chr1 63899918 63900007 -218293657 - MIR SINE MIR -16 246 162 180 111 0 0 chr1 63900007 63900034 -218293630 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2289 60 0 10 chr1 63900097 63900396 -218293268 + AluY SINE Alu 1 296 -15 586 328 35 20 chr1 63900398 63900596 -218293068 - MIR SINE MIR -56 206 6 324 328 56 98 chr1 63900601 63901031 -218292633 - L2 LINE L2 -20 3252 2841 24 53 0 0 chr1 63902003 63902041 -218291623 + AT_rich Low_complexity Low_complexity 1 38 0 357 233 14 85 chr1 63902080 63902257 -218291407 - MIR SINE MIR -62 146 37 673 263 43 71 chr1 63902290 63902374 -218291290 - MIR SINE MIR 0 262 177 2449 54 0 0 chr1 63902374 63902672 -218290992 - AluY SINE Alu -13 298 1 673 263 43 71 chr1 63902672 63902842 -218290822 - MIR SINE MIR -85 177 15 24 32 0 0 chr1 63903496 63903527 -218290137 + AT_rich Low_complexity Low_complexity 1 31 0 667 217 40 49 chr1 63904083 63904309 -218289355 - LTR33A LTR ERVL -3 520 297 209 139 23 0 chr1 63905032 63905075 -218288589 + (TA)n Simple_repeat Simple_repeat 1 44 0 1317 252 46 33 chr1 63905448 63906056 -218287608 - L1MEc LINE L1 -4147 2249 1634 * 1584 235 50 2 chr1 63906055 63906497 -218287167 - L1MEc LINE L1 -4918 1127 665 442 230 115 18 chr1 63906516 63906681 -218286983 - L1MEc LINE L1 -6187 377 197 1186 296 136 26 chr1 63906699 63908134 -218285530 - L1MEc LINE L1 -4756 1989 441 183 339 0 0 chr1 63908232 63908288 -218285376 - L2 LINE L2 0 3272 3217 518 301 82 10 chr1 63908298 63908516 -218285148 + MIR SINE MIR 4 233 -29 221 69 0 0 chr1 63909484 63909513 -218284151 + L2 LINE L2 3270 3298 -15 1217 143 4 91 chr1 63910184 63910439 -218283225 + AluJb SINE Alu 87 312 0 1163 251 130 24 chr1 63910849 63911395 -218282269 - L1ME2 LINE L1 0 6164 5561 327 322 35 14 chr1 63911395 63911538 -218282126 + LTR16A1 LTR ERVL 3 148 -309 322 198 0 104 chr1 63911549 63911610 -218282054 + MER96 DNA MER1_type? 1 67 -108 2030 133 4 0 chr1 63911610 63911889 -218281775 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr1 63911889 63911912 -218281752 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 322 198 0 104 chr1 63911912 63911945 -218281719 + MER96 DNA MER1_type? 65 86 -89 340 298 35 18 chr1 63912513 63912627 -218281037 + MIR SINE MIR 26 141 -67 332 329 50 14 chr1 63913403 63913543 -218280121 - MIR SINE MIR -57 205 61 1256 277 111 11 chr1 63914401 63914859 -218278805 - L2 LINE L2 -1537 1777 1274 1729 271 94 13 chr1 63914929 63915626 -218278038 - L2 LINE L2 -208 3105 2347 180 325 0 0 chr1 63915719 63915759 -218277905 + L2 LINE L2 3207 3246 -26 2465 59 0 0 chr1 63915759 63916048 -218277616 + AluY SINE Alu 1 289 -22 226 321 67 5 chr1 63916104 63916297 -218277367 + L1ME LINE L1 5136 5340 -806 495 256 24 114 chr1 63916391 63916470 -218277194 + L1ME LINE L1 5400 5485 -636 1568 200 25 0 chr1 63916470 63916755 -218276909 + AluJo SINE Alu 1 292 -20 495 256 24 114 chr1 63916755 63916964 -218276700 + L1ME LINE L1 5485 5662 -459 1881 159 17 75 chr1 63917162 63917576 -218276088 + MLT1B LTR MaLR 1 390 0 453 338 29 29 chr1 63917576 63917780 -218275884 - MIR SINE MIR -43 219 16 2127 81 18 0 chr1 63917809 63918092 -218275572 + L1PA7 LINE L1 5865 6152 -2 1603 155 47 20 chr1 63918092 63918389 -218275275 - AluSx SINE Alu -7 305 1 24 0 0 0 chr1 63918498 63918522 -218275142 + AT_rich Low_complexity Low_complexity 1 24 0 1686 251 48 7 chr1 63919472 63919914 -218273750 + LTR40b LTR ERVL 1 460 -2 518 277 188 5 chr1 63919958 63920171 -218273493 - MIR SINE MIR -5 257 6 1915 211 38 92 chr1 63920437 63921168 -218272496 + L1MC4a LINE L1 7116 7807 -1 433 309 146 9 chr1 63921217 63921437 -218272227 + MIR SINE MIR 3 252 -10 718 276 86 4 chr1 63921597 63921840 -218271824 - MER102b DNA MER1_type 0 341 79 218 261 0 0 chr1 63922286 63922332 -218271332 + L3 LINE CR1 1515 1560 -17 242 358 0 11 chr1 63922903 63922998 -218270666 - MIR3 SINE MIR -25 183 90 531 272 60 68 chr1 63923309 63923544 -218270120 - MIR SINE MIR -2 260 28 187 344 16 0 chr1 63923642 63923703 -218269961 - L2 LINE L2 -17 3296 3235 787 216 35 20 chr1 63924201 63924400 -218269264 + MIR SINE MIR 36 237 -25 330 287 26 35 chr1 63924722 63924837 -218268827 + MIR SINE MIR 75 188 -74 267 54 0 0 chr1 63925285 63925322 -218268342 + (CA)n Simple_repeat Simple_repeat 2 38 0 267 305 229 8 chr1 63925748 63925866 -218267798 + MIR SINE MIR 22 165 -97 362 304 18 18 chr1 63925963 63926075 -218267589 + MIR SINE MIR 21 132 -76 26 50 0 0 chr1 63926311 63926351 -218267313 + AT_rich Low_complexity Low_complexity 1 40 0 2052 125 0 3 chr1 63926549 63926844 -218266820 + AluSc SINE Alu 1 294 -15 495 275 29 26 chr1 63927638 63927656 -218266008 + MIR SINE MIR 44 60 -202 924 236 5 0 chr1 63927656 63927864 -218265800 + MER3 DNA MER1_type 1 209 0 495 275 29 26 chr1 63927864 63928057 -218265607 + MIR SINE MIR 60 256 -6 588 339 36 0 chr1 63928951 63929175 -218264489 + L2 LINE L2 2225 2456 -858 905 183 0 3 chr1 63929347 63929576 -218264088 + AluJb SINE Alu 1 303 -9 248 259 123 12 chr1 63929595 63929676 -218263988 + L2 LINE L2 3143 3232 -40 197 281 224 43 chr1 63929681 63929891 -218263773 + L2 LINE L2 3066 3313 0 402 103 39 0 chr1 63930112 63930190 -218263474 + CT-rich Low_complexity Low_complexity 2 82 0 429 248 75 15 chr1 63930754 63930887 -218262777 + MIR SINE MIR 60 200 -62 210 130 68 34 chr1 63931065 63931211 -218262453 + (CA)n Simple_repeat Simple_repeat 2 152 0 240 324 38 0 chr1 63931432 63931537 -218262127 - MIR SINE MIR -4 258 150 329 262 81 64 chr1 63932406 63932578 -218261086 - MIR SINE MIR -31 231 57 346 295 147 26 chr1 63932794 63932984 -218260680 + L2 LINE L2 3008 3220 -93 726 293 37 8 chr1 63934234 63934476 -218259188 - MIR SINE MIR 0 262 14 279 292 111 53 chr1 63934727 63934898 -218258766 + MIR3 SINE MIR 17 197 -11 1098 235 123 24 chr1 63935027 63935482 -218258182 - MLT1D LTR MaLR 0 505 6 182 361 0 42 chr1 63936091 63936163 -218257501 + MIR SINE MIR 35 103 -105 213 343 20 39 chr1 63936191 63936293 -218257371 + L2 LINE L2 3087 3186 -86 314 322 136 25 chr1 63936368 63936486 -218257178 - MIR SINE MIR -112 150 20 187 243 0 0 chr1 63936841 63936878 -218256786 - MIR SINE MIR -178 84 48 219 88 0 0 chr1 63937034 63937068 -218256596 + (CA)n Simple_repeat Simple_repeat 1 34 0 364 309 57 17 chr1 63938400 63938575 -218255089 + MIR SINE MIR 75 256 -6 213 204 0 37 chr1 63938850 63938904 -218254760 + (TA)n Simple_repeat Simple_repeat 2 53 0 3362 245 31 46 chr1 63938977 63940571 -218253093 + L1MA9 LINE L1 1 2167 -5001 1182 219 11 4 chr1 63940551 63940830 -218252834 + L1MA9 LINE L1 5602 5882 -1285 * 4210 209 18 11 chr1 63941862 63943283 -218250381 + L1MA9 LINE L1 5864 7295 -38 26 30 0 0 chr1 63943283 63943316 -218250348 + AT_rich Low_complexity Low_complexity 1 33 0 2594 186 0 11 chr1 63943343 63944063 -218249601 + L1MB5 LINE L1 5074 5786 -388 1288 151 47 2 chr1 63944064 63944353 -218249311 - MER2 DNA MER2_type 0 345 1 1288 209 28 0 chr1 63944381 63944663 -218249001 + L1MB5 LINE L1 5877 6166 -8 700 240 121 19 chr1 63945369 63945727 -218247937 - LTR33A LTR ERVL 0 523 83 556 332 86 55 chr1 63946086 63946914 -218246750 + L2 LINE L2 2442 3292 -21 2464 296 154 21 chr1 63947137 63948576 -218245088 + L2 LINE L2 713 2343 -971 315 326 144 0 chr1 63948605 63948792 -218244872 + L2 LINE L2 2924 3137 -176 762 183 203 20 chr1 63949038 63949240 -218244424 + MER8 DNA MER2_type 1 239 0 246 257 120 64 chr1 63949801 63949875 -218243789 + MIR3 SINE MIR 10 78 -184 796 205 79 0 chr1 63949875 63950065 -218243599 - MER3 DNA MER1_type 0 209 5 246 257 120 64 chr1 63950065 63950194 -218243470 + MIR3 SINE MIR 78 252 -10 231 328 56 8 chr1 63950189 63950314 -218243350 + L2 LINE L2 3166 3296 -17 * 202 219 37 12 chr1 63950418 63950500 -218243164 + (TA)n Simple_repeat Simple_repeat 1 84 0 285 151 0 0 chr1 63950536 63950589 -218243075 + GA-rich Low_complexity Low_complexity 2 54 0 372 321 59 7 chr1 63950598 63950787 -218242877 - MIR SINE MIR -21 241 5 501 237 184 53 chr1 63950933 63951123 -218242541 + MIR SINE MIR 17 231 -31 574 322 47 2 chr1 63952413 63952638 -218241026 - MIR SINE MIR -17 245 17 392 248 40 0 chr1 63952662 63952763 -218240901 - MIR SINE MIR -64 198 94 200 362 48 38 chr1 63952786 63952891 -218240773 + MIR SINE MIR 27 132 -130 1730 168 10 46 chr1 63952944 63953248 -218240416 + AluJb SINE Alu 1 293 -19 242 348 133 15 chr1 63953978 63954113 -218239551 + MIR3 SINE MIR 3 153 -55 246 300 14 14 chr1 63954164 63954234 -218239430 - L2 LINE L2 0 3272 3203 536 276 160 0 chr1 63954311 63954467 -218239197 + MER5A DNA MER1_type 9 189 0 242 377 9 0 chr1 63954579 63954685 -218238979 - L2 LINE L2 -304 2968 2862 202 231 0 26 chr1 63954951 63955029 -218238635 + GA-rich Low_complexity Low_complexity 1 76 0 2407 91 7 3 chr1 63955032 63955341 -218238323 + AluSp SINE Alu 1 310 -3 236 222 0 0 chr1 63955885 63955912 -218237752 + LTR16C LTR ERVL 438 464 -27 290 45 23 0 chr1 63955912 63955956 -218237708 + (TTG)n Simple_repeat Simple_repeat 2 46 0 236 222 0 0 chr1 63955956 63955982 -218237682 + LTR16C LTR ERVL 463 491 0 271 109 43 0 chr1 63956108 63956154 -218237510 - L2 LINE L2 0 3313 3266 363 343 117 25 chr1 63956222 63956496 -218237168 - L3 LINE CR1 -8 1569 1271 265 288 159 37 chr1 63956502 63956665 -218236999 - MIR3 SINE MIR -7 201 19 23 0 0 0 chr1 63956887 63956910 -218236754 + AT_rich Low_complexity Low_complexity 1 23 0 288 273 124 33 chr1 63956924 63957045 -218236619 - L2 LINE L2 -2 3270 3139 441 337 58 25 chr1 63957051 63957294 -218236370 + MIR SINE MIR 12 262 0 439 358 39 9 chr1 63957375 63957604 -218236060 + LTR16A LTR ERVL 8 243 -207 655 323 56 12 chr1 63957732 63957983 -218235681 + MIR SINE MIR 1 262 0 2234 99 0 0 chr1 63958401 63958705 -218234959 - AluY SINE Alu -7 304 1 280 259 12 12 chr1 63959323 63959404 -218234260 - MIR SINE MIR -71 191 111 603 313 34 6 chr1 63959506 63959682 -218233982 + MIR SINE MIR 12 192 -70 427 316 23 17 chr1 63960347 63960524 -218233140 - MIR3 SINE MIR -14 194 17 259 352 111 32 chr1 63960606 63960859 -218232805 - L2 LINE L2 -1 3312 3040 477 62 0 0 chr1 63961198 63961263 -218232401 + (CA)n Simple_repeat Simple_repeat 2 66 0 318 313 68 20 chr1 63961780 63961927 -218231737 + MIR SINE MIR 86 239 -23 257 351 15 22 chr1 63962234 63962368 -218231296 + MIR SINE MIR 78 210 -52 220 224 0 0 chr1 63962451 63962500 -218231164 + A-rich Low_complexity Low_complexity 1 49 0 612 231 115 73 chr1 63963334 63963568 -218230096 - MIR SINE MIR -8 254 11 255 294 32 56 chr1 63964305 63964431 -218229233 - MIR SINE MIR -119 143 21 672 143 18 0 chr1 63964468 63964580 -218229084 + AluSc SINE Alu 190 303 -6 293 322 58 71 chr1 63965034 63965329 -218228335 - L2 LINE L2 -164 3108 2818 387 298 12 10 chr1 63965518 63965636 -218228028 - MIR SINE MIR -62 146 33 605 289 46 39 chr1 63966221 63966481 -218227183 - MIR SINE MIR 0 262 1 270 320 68 0 chr1 63966527 63966630 -218227034 + MIR SINE MIR 16 125 -83 1691 108 78 0 chr1 63966640 63966895 -218226769 - AluSx SINE Alu 0 307 35 373 287 9 56 chr1 63968074 63968182 -218225482 - MIR SINE MIR -83 125 23 314 301 49 69 chr1 63968172 63968375 -218225289 + L2 LINE L2 2865 3063 -209 * 378 0 0 0 chr1 63968387 63968429 -218225235 + (TG)n Simple_repeat Simple_repeat 1 42 0 366 293 89 13 chr1 63969153 63969310 -218224354 + MIR SINE MIR 80 248 -14 345 291 116 42 chr1 63969798 63970033 -218223631 + MIR SINE MIR 5 256 -6 343 299 65 39 chr1 63970414 63970568 -218223096 - MIR SINE MIR -99 163 6 228 200 22 0 chr1 63970713 63970758 -218222906 + MIR SINE MIR 107 152 -110 23 68 0 0 chr1 63970840 63970884 -218222780 + AT_rich Low_complexity Low_complexity 1 44 0 561 264 71 30 chr1 63971505 63971702 -218221962 + MIR SINE MIR 58 262 0 371 307 35 49 chr1 63971872 63972080 -218221584 + MIR SINE MIR 3 208 -29 241 320 139 8 chr1 63972545 63972668 -218220996 + MIR SINE MIR 13 143 -65 241 254 28 0 chr1 63972688 63972759 -218220905 - MLT1H LTR MaLR -15 527 455 676 251 53 45 chr1 63972883 63973130 -218220534 - MLT1H LTR MaLR -258 291 43 1963 212 75 46 chr1 63973278 63974020 -218219644 + L1MC5 LINE L1 7154 7917 -44 427 188 31 0 chr1 63974055 63974151 -218219513 + L1MC5 LINE L1 7344 7442 -519 2918 205 17 23 chr1 63974163 63974333 -218219331 + L1M4 LINE L1 3690 3859 -2287 1547 181 49 21 chr1 63974333 63974621 -218219043 + AluJo SINE Alu 1 296 -16 2918 205 17 23 chr1 63974621 63975200 -218218464 + L1M4 LINE L1 3859 4435 -1711 888 156 0 0 chr1 63975227 63975368 -218218296 + L1MC1 LINE L1 6177 6317 -16 876 155 0 0 chr1 63975382 63975511 -218218153 - FLAM_C SINE Alu -10 133 5 803 148 0 77 chr1 63975511 63975664 -218218000 + L1MA6 LINE L1 6130 6268 -32 2317 106 0 3 chr1 63975664 63975966 -218217698 - AluSg SINE Alu -9 301 1 803 148 0 77 chr1 63975966 63975994 -218217670 + L1MA6 LINE L1 6268 6297 -3 210 241 37 19 chr1 63976077 63976131 -218217533 + L2 LINE L2 3232 3286 -27 243 274 49 39 chr1 63976177 63976279 -218217385 + L2 LINE L2 2853 2955 -317 7459 37 0 0 chr1 63976337 63977532 -218216132 - L1PA4 LINE L1 -4 6151 4957 14414 33 2 4 chr1 63977640 63980178 -218213486 - L1PA4 LINE L1 -51 6104 3572 283 255 133 0 chr1 63980243 63980341 -218213323 + L2 LINE L2 3146 3256 -16 1117 132 4 35 chr1 63980576 63980803 -218212861 + L1M4 LINE L1 5022 5241 -905 2242 104 0 16 chr1 63980843 63981151 -218212513 - AluSc SINE Alu -6 303 1 328 194 14 14 chr1 63981151 63981223 -218212441 + Tigger5 DNA MER2_type 2252 2323 0 1340 151 129 50 chr1 63981223 63981679 -218211985 + L1M4 LINE L1 5240 5782 -402 240 358 8 58 chr1 63981716 63981836 -218211828 + MIR SINE MIR 21 134 -74 748 278 5 0 chr1 63982170 63982382 -218211282 + L1MEc LINE L1 34 246 -6150 275 164 0 0 chr1 63982375 63982436 -218211228 + L1M4 LINE L1 4147 4207 -1939 * 1612 39 0 0 chr1 63982431 63982636 -218211028 - L1PA4 LINE L1 -27 6128 5924 394 235 26 57 chr1 63982637 63982867 -218210797 + L1M4 LINE L1 4138 4360 -1786 272 126 39 68 chr1 63982872 63982975 -218210689 + T-rich Low_complexity Low_complexity 3 102 0 1915 239 75 35 chr1 63983007 63983728 -218209936 + L1M4 LINE L1 4385 5134 -1012 360 0 0 0 chr1 63984324 63984364 -218209300 + (CA)n Simple_repeat Simple_repeat 2 41 0 289 319 0 0 chr1 63984547 63984619 -218209045 - L2 LINE L2 -2 3270 3199 301 340 51 32 chr1 63984641 63984797 -218208867 + L2 LINE L2 2911 3069 -203 192 352 68 0 chr1 63984859 63984947 -218208717 + L2 LINE L2 3179 3272 0 203 239 0 22 chr1 63985669 63985715 -218207949 + L2 LINE L2 3267 3311 -2 636 333 77 37 chr1 63985846 63986225 -218207439 - L2 LINE L2 0 3313 2920 1340 160 87 30 chr1 63986271 63986598 -218207066 + MLT1A1 LTR MaLR 5 362 -28 2594 296 87 14 chr1 63986610 63987633 -218206031 - L2 LINE L2 -423 2891 1794 371 271 215 14 chr1 63987910 63988054 -218205610 - MER5B DNA MER1_type -5 173 1 259 356 91 27 chr1 63988142 63988361 -218205303 + L2 LINE L2 2560 2792 -522 1983 149 60 9 chr1 63988378 63988727 -218204937 - MER41E LTR ERV1 -145 367 1 1324 245 73 39 chr1 63988812 63989319 -218204345 - MER41E-int LTR ERV1 0 6676 6153 267 198 49 74 chr1 63989345 63989426 -218204238 - HERV3 LTR ERV1 -4654 3772 3694 402 343 64 27 chr1 63989636 63989855 -218203809 + L2 LINE L2 2826 3052 -220 294 259 86 0 chr1 63990916 63990997 -218202667 - MIR SINE MIR -67 195 108 962 283 4 4 chr1 63992016 63992260 -218201404 + MIR SINE MIR 9 252 -10 273 338 32 13 chr1 63993271 63993425 -218200239 - MIR SINE MIR -18 244 88 429 324 14 27 chr1 63994054 63994202 -218199462 + MIR SINE MIR 8 153 -109 333 282 141 0 chr1 63994461 63994603 -218199061 + MIR SINE MIR 100 261 -1 210 286 0 0 chr1 63994607 63994649 -218199015 - L2 LINE L2 -40 3232 3191 352 193 12 24 chr1 63994789 63994872 -218198792 - MIR SINE MIR -1 261 180 2718 219 63 15 chr1 63994872 63995460 -218198204 + MLT1E2 LTR MaLR 1 616 -10 380 291 108 0 chr1 63995467 63995615 -218198049 - MIR SINE MIR -77 185 22 210 195 0 0 chr1 63995633 63995674 -218197990 + L2 LINE L2 3270 3310 -3 1725 176 0 7 chr1 63995741 63996025 -218197639 + AluJo SINE Alu 1 282 -30 388 280 43 28 chr1 63996123 63996334 -218197330 + MIR3 SINE MIR 14 222 -40 233 286 65 0 chr1 63996358 63996435 -218197229 - L2 LINE L2 -6 3307 3226 290 387 24 0 chr1 63996700 63996824 -218196840 - L2 LINE L2 -212 3060 2934 778 285 128 20 chr1 63996861 63997065 -218196599 + MLT1I LTR MaLR 4 184 -225 1559 157 61 29 chr1 63997065 63997377 -218196287 - MER33 DNA MER1_type -1 323 2 778 285 128 20 chr1 63997377 63997530 -218196134 + MLT1I LTR MaLR 184 400 -9 483 240 48 16 chr1 63998597 63998722 -218194942 + MIR SINE MIR 64 192 -70 269 355 0 11 chr1 63998743 63998836 -218194828 + MIR3 SINE MIR 13 104 -104 181 366 24 0 chr1 63999571 63999653 -218194011 - MIR SINE MIR -59 149 66 678 304 16 29 chr1 64000658 64000901 -218192763 + MIR SINE MIR 15 254 -8 390 274 144 50 chr1 64001035 64001513 -218192151 + L1MC4 LINE L1 6478 6910 -1132 1689 164 73 0 chr1 64001513 64001800 -218191864 - AluJb SINE Alu -4 308 1 390 274 144 50 chr1 64001800 64002198 -218191466 + L1MC4 LINE L1 6910 7443 -599 * 607 264 99 65 chr1 64002188 64002791 -218190873 + L1MC5 LINE L1 7260 7883 -78 24 0 0 0 chr1 64002925 64002949 -218190715 + AT_rich Low_complexity Low_complexity 1 24 0 426 306 38 19 chr1 64003205 64003365 -218190299 - MER5A DNA MER1_type -25 164 2 384 353 128 48 chr1 64004046 64004397 -218189267 + L2 LINE L2 2894 3272 0 283 346 101 31 chr1 64004694 64004922 -218188742 + L3 LINE CR1 445 688 -889 228 324 0 0 chr1 64005595 64005663 -218188001 + MIR SINE MIR 195 262 0 24 0 0 0 chr1 64005665 64005689 -218187975 + AT_rich Low_complexity Low_complexity 1 24 0 24573 67 1 0 chr1 64005751 64009603 -218184061 + L1PA6 LINE L1 2324 6168 0 314 181 181 36 chr1 64009929 64010012 -218183652 + MIR SINE MIR 11 105 -157 2017 93 4 0 chr1 64010338 64010597 -218183067 + L1PA8 LINE L1 5913 6172 0 639 290 45 66 chr1 64010626 64010784 -218182880 - L3 LINE CR1 -192 1385 1225 634 186 9 18 chr1 64010784 64010897 -218182767 + MER81 DNA DNA 1 112 -2 639 290 45 66 chr1 64010897 64011073 -218182591 - L3 LINE CR1 -352 1225 1058 243 293 98 15 chr1 64011334 64011467 -218182197 - L1ME3A LINE L1 -230 5940 5797 708 135 24 0 chr1 64011688 64011814 -218181850 - L1MA7 LINE L1 -2 6289 6161 2205 125 0 0 chr1 64011890 64012195 -218181469 + AluSx SINE Alu 1 305 -7 14061 123 22 94 chr1 64012222 64012764 -218180900 - Tigger1 DNA MER2_type 0 2418 1839 2247 138 17 3 chr1 64012764 64013112 -218180552 - L1PA16 LINE L1 -9 6157 5805 14061 123 22 94 chr1 64013112 64014869 -218178795 - Tigger1 DNA MER2_type -579 1839 -43 216 0 0 0 chr1 64014869 64014893 -218178771 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 8684 45 1 0 chr1 64014900 64016666 -218176998 - L1PA5 LINE L1 -5 6149 4382 14061 123 22 94 chr1 64016666 64016961 -218176703 - Tigger1 DNA MER2_type -2101 317 2 331 110 30 0 chr1 64016961 64017021 -218176643 - L1MA7 LINE L1 -179 6112 6044 256 140 123 0 chr1 64017630 64017687 -218175977 - L1MA7 LINE L1 -596 5584 5521 25 31 0 0 chr1 64017904 64017936 -218175728 + AT_rich Low_complexity Low_complexity 1 32 0 1089 90 0 0 chr1 64017936 64018069 -218175595 - AluSg/x SINE Alu -24 288 156 276 292 31 10 chr1 64018180 64018276 -218175388 - MIR SINE MIR -136 126 29 1999 166 0 0 chr1 64018509 64018804 -218174860 + AluJb SINE Alu 1 295 -17 241 336 42 0 chr1 64019128 64019247 -218174417 - L2 LINE L2 -217 3055 2932 381 219 65 57 chr1 64019471 64019594 -218174070 - MER5A DNA MER1_type -29 160 37 415 300 47 29 chr1 64019824 64019994 -218173670 - MIR SINE MIR -70 192 20 2706 149 16 50 chr1 64020942 64021444 -218172220 - MER31A LTR ERV1 0 485 1 188 359 11 0 chr1 64021748 64021840 -218171824 + MIR SINE MIR 154 246 -16 216 267 250 15 chr1 64021865 64021995 -218171669 + MIR SINE MIR 32 147 -61 408 296 46 122 chr1 64022924 64023252 -218170412 - L2 LINE L2 0 3272 2970 205 330 80 62 chr1 64023848 64024124 -218169540 + L3 LINE CR1 178 458 -1119 230 242 0 101 chr1 64024184 64024283 -218169381 - L2 LINE L2 -166 3106 3018 686 254 6 33 chr1 64024334 64024515 -218169149 + MIR SINE MIR 83 258 -4 2868 177 21 0 chr1 64024543 64025029 -218168635 - L1MC2 LINE L1 -10 6334 5839 193 310 0 58 chr1 64025051 64025138 -218168526 + L3 LINE CR1 518 599 -978 204 302 0 0 chr1 64025697 64025750 -218167914 - L2 LINE L2 -223 3049 2997 375 290 134 16 chr1 64026783 64026969 -218166695 + MIR SINE MIR 28 235 -27 238 188 0 58 chr1 64027128 64027197 -218166467 - MLT1K LTR MaLR -17 571 507 416 282 130 32 chr1 64027311 64027527 -218166137 + MLT1J LTR MaLR 100 336 -175 554 319 62 42 chr1 64028291 64028350 -218165314 + L2 LINE L2 2221 2277 -1037 822 206 75 0 chr1 64028350 64028510 -218165154 - MER96 DNA MER1_type -2 173 2 554 319 62 42 chr1 64028510 64028921 -218164743 + L2 LINE L2 2277 2700 -614 238 300 82 27 chr1 64029073 64029183 -218164481 + L2 LINE L2 2965 3080 -192 292 358 42 0 chr1 64029368 64029488 -218164176 - L2 LINE L2 0 3272 3148 237 371 0 0 chr1 64030067 64030164 -218163500 + MIR SINE MIR 164 260 -2 397 286 196 6 chr1 64030874 64031042 -218162622 + MIR3 SINE MIR 6 205 -3 181 323 222 0 chr1 64031475 64031574 -218162090 - L2 LINE L2 -1 3271 3151 198 306 0 0 chr1 64031697 64031746 -218161918 - L2 LINE L2 -202 3070 3022 195 311 33 0 chr1 64031916 64031977 -218161687 + L2 LINE L2 3116 3178 -94 21 0 0 0 chr1 64032933 64032954 -218160710 + AT_rich Low_complexity Low_complexity 1 21 0 235 275 66 50 chr1 64033189 64033371 -218160293 + L1ME LINE L1 5292 5476 -645 220 267 52 52 chr1 64033854 64033970 -218159694 + MIR SINE MIR 25 140 -122 360 125 0 0 chr1 64034117 64034181 -218159483 + (CA)n Simple_repeat Simple_repeat 2 65 0 2234 81 3 0 chr1 64034651 64034961 -218158703 - AluSp SINE Alu 0 311 1 1045 90 14 0 chr1 64035072 64035217 -218158447 + AluSc SINE Alu 163 309 0 505 253 148 0 chr1 64035322 64035484 -218158180 + MIR SINE MIR 77 262 0 439 301 77 34 chr1 64035719 64035928 -218157736 + MIR SINE MIR 32 249 -13 230 311 37 22 chr1 64035953 64036088 -218157576 - MARNA DNA Mariner -46 540 404 1030 277 65 3 chr1 64036180 64036516 -218157148 - L1ME4a LINE L1 -201 5920 5564 369 242 61 15 chr1 64036517 64036649 -218157015 - L3 LINE CR1 -311 1266 1129 1245 286 64 12 chr1 64036994 64037480 -218156184 - LTR33 LTR ERVL -7 514 4 569 337 118 18 chr1 64037725 64038114 -218155550 + L2 LINE L2 2845 3272 0 297 320 54 14 chr1 64039339 64039486 -218154178 - L2 LINE L2 -228 3044 2892 892 138 0 20 chr1 64039488 64039640 -218154024 + L1PB1 LINE L1 6002 6150 -1 254 309 12 0 chr1 64039878 64039963 -218153701 + MIR SINE MIR 67 153 -55 756 231 44 20 chr1 64039992 64040195 -218153469 - MIR SINE MIR -18 244 37 192 300 17 0 chr1 64040458 64040518 -218153146 - L3b LINE CR1 -1 1582 1522 198 0 0 0 chr1 64040834 64040856 -218152808 + (A)n Simple_repeat Simple_repeat 1 22 0 1921 120 36 0 chr1 64041055 64041365 -218152299 - AluSx SINE Alu 0 320 1 561 256 23 62 chr1 64041488 64041664 -218152000 + MIR SINE MIR 23 191 -71 275 266 16 0 chr1 64041897 64041961 -218151703 + MIR SINE MIR 150 214 -48 10615 126 26 23 chr1 64041985 64043649 -218150015 + Tigger1 DNA MER2_type 1 1669 -749 446 285 47 16 chr1 64094700 64094893 -218098771 + MIR SINE MIR 61 259 -3 366 319 14 29 chr1 64095378 64095516 -218098148 - MIR3 SINE MIR -61 147 12 791 183 134 6 chr1 64095921 64096085 -218097579 - MER93a LTR ERV1 -217 185 1 2060 134 0 13 chr1 64096891 64097211 -218096453 - AluSx SINE Alu 0 312 5 2149 122 3 0 chr1 64097733 64098021 -218095643 + AluSx SINE Alu 1 289 -23 2720 123 6 18 chr1 64098042 64098591 -218095073 + L1P5 LINE L1 5148 5689 -462 425 92 15 0 chr1 64098809 64098874 -218094790 + MER41B LTR ERV1 481 546 -89 926 247 74 36 chr1 64098909 64099245 -218094419 - L1MC4 LINE L1 -888 7154 6806 12727 15 0 0 chr1 64099252 64101472 -218092192 - L1HS LINE L1 0 6155 3935 203 231 0 13 chr1 64101721 64101799 -218091865 + (CA)n Simple_repeat Simple_repeat 2 78 0 324 240 48 20 chr1 64101854 64101870 -218091794 - L1MA10 LINE L1 0 6334 6319 2678 205 44 65 chr1 64101870 64102629 -218091035 - L1ME1 LINE L1 -5 6161 5418 578 207 0 0 chr1 64102629 64102745 -218090919 - L1PB4 LINE L1 -1 6155 6040 2682 82 23 6 chr1 64102750 64103104 -218090560 - THE1B LTR MaLR -4 360 1 2327 153 0 0 chr1 64103104 64103471 -218090193 - L1PB4 LINE L1 -113 6043 5677 350 185 15 0 chr1 64104229 64104294 -218089370 + L2 LINE L2 3247 3312 -1 2382 74 0 7 chr1 64106199 64106498 -218087166 + AluY SINE Alu 1 297 -14 973 276 77 19 chr1 64108357 64108905 -218084759 + L1ME4a LINE L1 5496 6121 0 456 283 92 8 chr1 64108922 64109131 -218084533 + MIR SINE MIR 21 241 -21 393 284 149 19 chr1 64109825 64110033 -218083631 + MIR SINE MIR 20 254 -8 2401 91 7 0 chr1 64110158 64110465 -218083199 - AluSq SINE Alu -4 309 1 259 264 28 0 chr1 64110473 64110545 -218083119 - MIR SINE MIR -122 140 67 442 296 148 32 chr1 64110592 64110930 -218082734 - L2 LINE L2 0 3313 2937 351 313 51 3 chr1 64111748 64111905 -218081759 - MIR SINE MIR -63 145 15 255 125 0 0 chr1 64112174 64112214 -218081450 + (A)n Simple_repeat Simple_repeat 1 40 0 259 364 64 12 chr1 64112502 64112675 -218080989 + MIR SINE MIR 20 201 -61 292 184 14 213 chr1 64112901 64113042 -218080622 + MER5A DNA MER1_type 71 183 -6 341 331 153 0 chr1 64113054 64113211 -218080453 - MER5A DNA MER1_type 0 189 9 261 151 0 0 chr1 64113582 64113635 -218080029 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 519 348 37 40 chr1 64113981 64114335 -218079329 - L2 LINE L2 -10 3262 2910 419 273 0 47 chr1 64114426 64114554 -218079110 - L2 LINE L2 -6 3266 3145 237 384 0 32 chr1 64115256 64115441 -218078223 + GA-rich Low_complexity Low_complexity 2 180 0 253 287 11 0 chr1 64116159 64116246 -218077418 - MIR SINE MIR -119 143 56 355 253 133 6 chr1 64116247 64116413 -218077251 + L2 LINE L2 2543 2729 -585 445 296 66 25 chr1 64116669 64116912 -218076752 + MLT1K LTR MaLR 336 588 0 1253 204 83 28 chr1 64117902 64118007 -218075657 + AluJo SINE Alu 3 101 -211 180 0 0 0 chr1 64118007 64118027 -218075637 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1253 204 83 28 chr1 64118027 64118210 -218075454 + AluJo SINE Alu 101 307 -5 359 189 40 114 chr1 64119789 64119964 -218073700 + MIR SINE MIR 31 192 -70 10120 169 67 89 chr1 64120138 64120444 -218073220 - L1MC3 LINE L1 0 7785 7474 1987 98 23 4 chr1 64120444 64120710 -218072954 - AluSx SINE Alu -25 287 17 10120 169 67 89 chr1 64120710 64121041 -218072623 - L1MC3 LINE L1 -311 7474 7137 273 337 0 10 chr1 64121041 64121139 -218072525 - MLT1F1 LTR MaLR -436 131 35 10120 169 67 89 chr1 64121139 64121268 -218072396 - L1MC3 LINE L1 -648 7137 7007 429 70 0 0 chr1 64121268 64121325 -218072339 + (TTA)n Simple_repeat Simple_repeat 2 58 0 1772 177 0 3 chr1 64121327 64121610 -218072054 - AluJo SINE Alu -30 282 1 10120 169 67 89 chr1 64121610 64122415 -218071249 - L1MC3 LINE L1 -779 7006 6185 2259 99 3 0 chr1 64122415 64122728 -218070936 - AluSp SINE Alu 0 314 1 10120 169 67 89 chr1 64122728 64123805 -218069859 - L1MC3 LINE L1 -1600 6185 5092 311 228 0 25 chr1 64124288 64124367 -218069297 - MIR SINE MIR -136 126 50 181 222 162 71 chr1 64125167 64125266 -218068398 + MIR SINE MIR 33 140 -122 448 246 93 0 chr1 64125955 64126073 -218067591 + MIR SINE MIR 18 146 -62 188 370 92 25 chr1 64126532 64126651 -218067013 + L2 LINE L2 3137 3263 -9 676 245 24 35 chr1 64127228 64127480 -218066184 + MIR SINE MIR 9 250 -12 180 296 94 94 chr1 64127498 64127731 -218065933 + L2 LINE L2 3040 3272 0 207 152 22 0 chr1 64128006 64128052 -218065612 - L2 LINE L2 0 3313 3267 2203 123 20 0 chr1 64128109 64128411 -218065253 + AluSg SINE Alu 1 308 -2 234 307 89 20 chr1 64128496 64128597 -218065067 + MIR3 SINE MIR 15 122 -86 416 229 0 25 chr1 64128945 64129063 -218064601 + MIR SINE MIR 89 203 -59 2082 135 50 71 chr1 64129111 64129475 -218064189 + MSTA LTR MaLR 1 356 -72 1797 127 95 0 chr1 64129475 64129759 -218063905 - AluSq SINE Alu -1 312 2 2082 135 50 71 chr1 64129759 64129831 -218063833 + MSTA LTR MaLR 356 428 0 1940 208 17 0 chr1 64129925 64130272 -218063392 + MLT1A1 LTR MaLR 1 353 -12 341 302 32 16 chr1 64130400 64130526 -218063138 + MIR3 SINE MIR 35 162 -46 273 254 76 42 chr1 64130689 64130807 -218062857 - MLT1L LTR MaLR -235 380 259 247 264 42 0 chr1 64130910 64130982 -218062682 - MLT1L LTR MaLR -540 75 1 1318 205 16 4 chr1 64131281 64131535 -218062129 + AluJo SINE Alu 17 273 -39 253 258 125 83 chr1 64131563 64131683 -218061981 - MLT1J LTR MaLR -93 418 294 228 111 0 0 chr1 64131725 64131761 -218061903 + (GAGAA)n Simple_repeat Simple_repeat 5 40 0 270 56 0 0 chr1 64131762 64131798 -218061866 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 228 341 0 0 chr1 64132253 64132341 -218061323 + MIR SINE MIR 165 252 -10 334 243 0 0 chr1 64132362 64132432 -218061232 + MIR SINE MIR 78 147 -61 239 325 38 0 chr1 64132549 64132629 -218061035 + MIR SINE MIR 104 186 -76 296 274 19 19 chr1 64133353 64133459 -218060205 - MIR SINE MIR -38 224 119 229 314 0 0 chr1 64133864 64133915 -218059749 + L2 LINE L2 3163 3213 -59 302 269 57 28 chr1 64134138 64134279 -218059385 + MIR3 SINE MIR 47 191 -17 339 85 0 0 chr1 64134571 64134618 -218059046 + (CA)n Simple_repeat Simple_repeat 1 47 0 655 122 0 0 chr1 64134801 64134891 -218058773 + FRAM SINE Alu 75 164 -12 188 169 28 155 chr1 64134891 64134962 -218058702 - MER5A DNA MER1_type -32 157 96 * 204 188 42 0 chr1 64134915 64134963 -218058701 + MER5A DNA MER1_type 56 105 -84 2578 80 0 0 chr1 64134996 64135309 -218058355 - AluSq SINE Alu 0 313 1 404 139 0 81 chr1 64135405 64135491 -218058173 + MER116 DNA Mariner 2 80 0 256 318 22 43 chr1 64135533 64135672 -218057992 - MIR SINE MIR -68 140 15 328 232 214 9 chr1 64136351 64136463 -218057201 - MIR SINE MIR -108 154 20 392 330 42 2 chr1 64136501 64136711 -218056953 - MIR SINE MIR -25 237 20 667 339 53 4 chr1 64137498 64137743 -218055921 - MIR SINE MIR 0 262 6 295 254 0 0 chr1 64137772 64137835 -218055829 + MIR SINE MIR 83 145 -117 22 0 0 0 chr1 64138082 64138104 -218055560 + AT_rich Low_complexity Low_complexity 1 22 0 278 303 97 62 chr1 64138468 64138613 -218055051 + MIR SINE MIR 43 192 -70 750 222 101 32 chr1 64138741 64138930 -218054734 - MIR SINE MIR -48 214 13 315 283 23 110 chr1 64138946 64139119 -218054545 - L2 LINE L2 -86 3186 3029 629 271 94 16 chr1 64139279 64139714 -218053950 - LTR33 LTR ERVL -2 519 10 2149 124 7 0 chr1 64139788 64140095 -218053569 - AluSx SINE Alu -3 309 1 288 0 0 0 chr1 64140321 64140353 -218053311 + (CA)n Simple_repeat Simple_repeat 2 33 0 259 275 72 58 chr1 64140520 64140658 -218053006 - MIR SINE MIR -101 161 22 891 245 89 17 chr1 64140983 64141220 -218052444 - MIR SINE MIR -1 261 8 464 196 150 39 chr1 64141223 64141376 -218052288 - MIR3 SINE MIR -19 189 20 334 272 27 54 chr1 64141845 64141992 -218051672 - MIR3 SINE MIR -49 159 17 360 314 137 7 chr1 64142379 64142532 -218051132 + MIR SINE MIR 29 201 -61 451 320 73 5 chr1 64142722 64142928 -218050736 + MLT1K LTR MaLR 207 426 -162 2276 57 0 0 chr1 64143189 64143491 -218050173 - AluY SINE Alu 0 302 1 503 252 143 32 chr1 64143582 64143896 -218049768 + L1ME4a LINE L1 5541 5889 -232 805 251 72 92 chr1 64143903 64144135 -218049529 - MLT1J LTR MaLR 0 511 291 2135 106 7 0 chr1 64144135 64144436 -218049228 + AluSp SINE Alu 1 303 -10 805 251 72 92 chr1 64144436 64144662 -218049002 - MLT1J LTR MaLR -220 291 62 1909 144 13 0 chr1 64144842 64145141 -218048523 + AluSx SINE Alu 1 303 -9 476 277 144 20 chr1 64145520 64145722 -218047942 - MIR SINE MIR -11 251 25 180 293 0 0 chr1 64146239 64146280 -218047384 + MIR SINE MIR 107 147 -61 556 288 31 6 chr1 64146486 64146646 -218047018 + MIR SINE MIR 7 170 -92 488 281 127 18 chr1 64146716 64146937 -218046727 - MIR SINE MIR -12 250 6 2001 182 70 8 chr1 64147649 64148014 -218045650 + MLT1C LTR MaLR 3 390 -77 2127 165 38 33 chr1 64148014 64148561 -218045103 + MLT2A2 LTR ERVL 2 554 0 501 181 0 0 chr1 64148561 64148644 -218045020 + MLT1C LTR MaLR 385 467 0 674 285 141 19 chr1 64148654 64148924 -218044740 - L2 LINE L2 -54 3259 2957 1850 85 4 26 chr1 64149008 64149279 -218044385 + L1MA1 LINE L1 6034 6298 -4 329 299 41 138 chr1 64149295 64149586 -218044078 + L2 LINE L2 3010 3272 0 438 120 0 0 chr1 64149586 64149661 -218044003 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 262 247 39 13 chr1 64149677 64149754 -218043910 - MIR SINE MIR -65 197 119 347 281 9 35 chr1 64149921 64150035 -218043629 - MIR SINE MIR -72 190 80 195 212 121 15 chr1 64150086 64150152 -218043512 - MIR3 SINE MIR -10 198 126 579 300 96 83 chr1 64150934 64151769 -218041895 + L2 LINE L2 2445 3272 0 2237 93 3 6 chr1 64151880 64152191 -218041473 - AluSq SINE Alu -3 310 1 353 329 155 16 chr1 64152261 64152571 -218041093 - L2 LINE L2 -1000 2314 1962 209 289 24 60 chr1 64154034 64154117 -218039547 - L2 LINE L2 -238 3034 2955 382 218 13 13 chr1 64154293 64154371 -218039293 + MIR SINE MIR 38 115 -93 400 98 0 0 chr1 64154374 64154435 -218039229 - AluSp/q SINE Alu -13 300 240 272 298 12 36 chr1 64154435 64154519 -218039145 + MIR3 SINE MIR 123 204 -4 302 289 21 10 chr1 64154665 64154762 -218038902 - MIR3 SINE MIR -12 196 99 288 0 0 0 chr1 64154891 64154923 -218038741 + (A)n Simple_repeat Simple_repeat 1 32 0 1601 167 17 0 chr1 64155300 64155587 -218038077 + AluSx SINE Alu 1 292 -20 659 12 0 12 chr1 64155876 64155957 -218037707 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 2073 100 0 29 chr1 64156007 64156317 -218037347 - AluSg SINE Alu -9 301 1 5872 144 35 9 chr1 64156321 64157174 -218036490 - L1PA16 LINE L1 -13 6153 5262 198 0 0 0 chr1 64157174 64157196 -218036468 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 5872 144 35 9 chr1 64157196 64157648 -218036016 - L1PA16 LINE L1 -904 5262 4823 245 287 23 23 chr1 64157659 64157746 -218035918 + L2 LINE L2 3186 3272 0 293 269 21 35 chr1 64157770 64157911 -218035753 + (TATATG)n Simple_repeat Simple_repeat 6 144 0 1908 107 4 4 chr1 64159549 64159820 -218033844 + AluSx SINE Alu 32 302 -10 373 254 142 12 chr1 64159948 64160117 -218033547 + L1ME4a LINE L1 5733 5923 -198 251 131 33 16 chr1 64160245 64160306 -218033358 + L1ME4a LINE L1 6051 6112 -9 2283 136 45 5 chr1 64161339 64161714 -218031950 + MLT1B LTR MaLR 1 390 0 426 226 71 9 chr1 64161753 64161870 -218031794 - MIR SINE MIR -72 136 12 199 247 55 18 chr1 64162111 64162221 -218031443 + MIR SINE MIR 6 121 -87 183 235 39 20 chr1 64162390 64162441 -218031223 + L2 LINE L2 2999 3050 -222 215 297 16 0 chr1 64162500 64162564 -218031100 + L2 LINE L2 3249 3313 0 446 282 61 33 chr1 64162564 64162777 -218030887 + L2 LINE L2 3094 3312 -1 183 331 37 54 chr1 64163084 64163326 -218030338 - L2 LINE L2 -219 3053 2816 425 323 15 0 chr1 64163785 64163918 -218029746 + MIR SINE MIR 48 182 -80 216 0 0 0 chr1 64163924 64163948 -218029716 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 217 176 0 0 chr1 64163948 64163982 -218029682 - L2 LINE L2 -19 3294 3261 649 304 11 6 chr1 64164881 64165069 -218028595 - MIR SINE MIR -61 147 1 273 276 59 39 chr1 64165174 64165308 -218028356 - MIR SINE MIR -62 146 35 830 216 27 5 chr1 64166079 64166264 -218027400 - MER5A DNA MER1_type 0 189 1 655 321 69 51 chr1 64166422 64166870 -218026794 + L2 LINE L2 2814 3269 -3 209 316 45 93 chr1 64166975 64167222 -218026442 - L2 LINE L2 -44 3228 2994 499 291 27 27 chr1 64167621 64167769 -218025895 + L2 LINE L2 3161 3308 -5 23 33 0 0 chr1 64167988 64168018 -218025646 + AT_rich Low_complexity Low_complexity 1 30 0 2031 79 0 0 chr1 64168022 64168289 -218025375 + AluY SINE Alu 42 308 -3 183 348 64 43 chr1 64168619 64168760 -218024904 - L3 LINE CR1 -58 1519 1376 314 307 61 9 chr1 64168775 64168889 -218024775 - MIR3 SINE MIR -8 200 81 3869 143 37 29 chr1 64168918 64169234 -218024430 + L1PB4 LINE L1 5449 5761 -395 1904 134 0 17 chr1 64169234 64169526 -218024138 + AluSx SINE Alu 1 287 -25 3869 143 37 29 chr1 64169526 64169908 -218023756 + L1PB4 LINE L1 5761 6153 -3 411 254 85 17 chr1 64170026 64170213 -218023451 + MIR SINE MIR 53 256 -6 202 200 0 40 chr1 64170220 64170295 -218023369 + CT-rich Low_complexity Low_complexity 4 75 0 289 200 0 11 chr1 64170360 64170424 -218023240 + MIR3 SINE MIR 104 167 -41 184 281 146 21 chr1 64170479 64170575 -218023089 - L2 LINE L2 -10 3262 3155 542 81 0 63 chr1 64170926 64171037 -218022627 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 394 260 39 16 chr1 64171108 64171235 -218022429 + GA-rich Low_complexity Low_complexity 3 132 0 475 295 29 9 chr1 64171242 64171400 -218022264 - MIR SINE MIR -23 185 20 333 219 61 24 chr1 64171592 64171674 -218021990 + MIR SINE MIR 66 150 -58 208 250 29 44 chr1 64171685 64171753 -218021911 + L3 LINE CR1 1509 1575 -2 183 182 0 0 chr1 64171758 64171791 -218021873 - L3 LINE CR1 -6 1571 1539 1641 219 112 2 chr1 64171835 64172245 -218021419 + MLT1J LTR MaLR 7 461 -50 346 286 6 81 chr1 64172783 64172944 -218020720 - MIR3 SINE MIR -23 185 37 415 246 66 41 chr1 64173484 64173606 -218020058 + L2 LINE L2 3189 3313 0 201 401 71 16 chr1 64173624 64173806 -218019858 + L2 LINE L2 2826 3017 -255 579 308 13 25 chr1 64173841 64174000 -218019664 + MER91A DNA MER1_type 40 196 0 354 305 84 0 chr1 64174062 64174193 -218019471 + L2 LINE L2 3125 3266 -6 369 243 63 36 chr1 64174211 64174322 -218019342 - MIR SINE MIR -74 134 21 2288 86 0 0 chr1 64174554 64174857 -218018807 + AluSg SINE Alu 1 303 -7 181 355 11 21 chr1 64175094 64175187 -218018477 + MIR3 SINE MIR 15 106 -102 393 266 102 8 chr1 64175307 64175435 -218018229 + MIR3 SINE MIR 11 150 -58 398 248 195 13 chr1 64175582 64175731 -218017933 + MIR SINE MIR 76 251 -11 600 291 45 17 chr1 64175759 64175938 -218017726 + MIR3 SINE MIR 13 196 -12 2119 102 3 0 chr1 64176114 64176407 -218017257 + AluSx SINE Alu 1 294 -18 1924 112 29 0 chr1 64176421 64176697 -218016967 + AluSx SINE Alu 12 295 -17 308 264 216 14 chr1 64176837 64176985 -218016679 + MIR SINE MIR 13 190 -72 21 0 0 0 chr1 64177510 64177531 -218016133 + GC_rich Low_complexity Low_complexity 1 21 0 321 183 28 42 chr1 64177954 64178025 -218015639 + L1MCa LINE L1 1995 2064 -4362 205 207 69 11 chr1 64178085 64178172 -218015492 + (TA)n Simple_repeat Simple_repeat 2 93 0 1884 248 85 44 chr1 64178196 64179055 -218014609 + L2 LINE L2 906 1799 -1515 306 206 8 127 chr1 64179058 64179120 -218014544 - Charlie2 DNA MER1_type -4 2858 2817 2127 104 0 7 chr1 64179120 64179428 -218014236 + AluSg SINE Alu 1 306 -4 306 206 8 127 chr1 64179428 64179491 -218014173 - Charlie2 DNA MER1_type -45 2817 2748 243 0 0 0 chr1 64179535 64179562 -218014102 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2054 180 3 21 chr1 64179566 64179954 -218013710 - L1MB2 LINE L1 -12 6159 5779 285 282 59 0 chr1 64179987 64180072 -218013592 - L2 LINE L2 -1 3271 3182 295 315 84 35 chr1 64180294 64180437 -218013227 + L2 LINE L2 3116 3265 -7 709 323 86 22 chr1 64180504 64180866 -218012798 - L2 LINE L2 -8 3305 2921 236 219 32 114 chr1 64181233 64181356 -218012308 + L2 LINE L2 3201 3313 0 196 326 78 23 chr1 64181362 64181491 -218012173 + L2 LINE L2 2267 2402 -912 466 232 161 65 chr1 64182058 64182226 -218011438 - MER5A DNA MER1_type -2 187 4 380 248 34 72 chr1 64182226 64182429 -218011235 - MIR SINE MIR -1 207 4 1099 236 24 139 chr1 64182780 64182896 -218010768 + MLT1D-int LTR MaLR 922 1050 -321 2058 114 7 16 chr1 64182896 64183203 -218010461 - AluSx SINE Alu -8 304 1 1099 236 24 139 chr1 64183203 64183271 -218010393 + MLT1D-int LTR MaLR 1050 1124 -247 2247 71 7 3 chr1 64183271 64183567 -218010097 - AluY SINE Alu -14 297 1 1099 236 24 139 chr1 64183567 64183890 -218009774 + MLT1D-int LTR MaLR 1124 1371 0 895 202 85 77 chr1 64183892 64184322 -218009342 + MLT1D LTR MaLR 3 505 0 184 129 97 0 chr1 64184443 64184474 -218009190 + L2 LINE L2 3222 3255 -17 32 43 0 0 chr1 64185298 64185344 -218008320 + AT_rich Low_complexity Low_complexity 1 46 0 411 302 95 12 chr1 64186968 64187137 -218006527 - MIR3 SINE MIR -9 199 17 2326 108 0 0 chr1 64188805 64189102 -218004562 - AluSg SINE Alu -13 297 1 207 364 42 25 chr1 64189546 64189664 -218004000 + L2 LINE L2 3142 3261 -11 543 314 51 91 chr1 64190315 64190764 -218002900 - L2 LINE L2 -4 3268 2838 1977 121 11 0 chr1 64190893 64191173 -218002491 + AluSx SINE Alu 1 283 -29 29 0 0 0 chr1 64191177 64191206 -218002458 + AT_rich Low_complexity Low_complexity 1 29 0 945 201 11 0 chr1 64191570 64191744 -218001920 - L1MB5 LINE L1 -60 6114 5939 438 247 133 12 chr1 64192554 64192720 -218000944 + MER5A DNA MER1_type 3 188 -1 204 278 19 0 chr1 64192747 64192801 -218000863 + MIR SINE MIR 49 103 -159 2176 99 34 0 chr1 64193577 64193869 -217999795 + AluSp SINE Alu 1 302 -11 1724 141 39 14 chr1 64193961 64194244 -217999420 - AluSx SINE Alu -22 290 1 568 220 0 0 chr1 64194354 64194463 -217999201 + FLAM_A SINE Alu 1 109 -33 186 303 61 0 chr1 64194802 64194868 -217998796 + L2 LINE L2 2903 2972 -300 674 266 106 14 chr1 64195080 64195287 -217998377 - MER112 DNA MER1_type -34 226 1 223 216 138 73 chr1 64195395 64195579 -217998085 - MIR SINE MIR -61 201 1 2804 128 5 27 chr1 64195607 64196051 -217997613 + Tigger2a DNA MER2_type 1 434 0 237 286 188 0 chr1 64196400 64196533 -217997131 + MIR3 SINE MIR 36 193 -15 270 230 80 9 chr1 64197644 64197757 -217995907 - MIR3 SINE MIR -12 196 76 254 411 33 13 chr1 64197761 64197912 -217995752 - L2 LINE L2 0 3272 3119 1860 189 77 83 chr1 64198009 64198517 -217995147 + MLT1D LTR MaLR 1 505 0 306 265 0 12 chr1 64199499 64199582 -217994082 + MIR SINE MIR 169 250 -12 292 360 120 12 chr1 64199829 64200071 -217993593 + L2 LINE L2 2593 2860 -454 25 0 0 0 chr1 64200759 64200784 -217992880 + AT_rich Low_complexity Low_complexity 1 25 0 318 256 115 26 chr1 64201911 64202067 -217991597 + MIR SINE MIR 32 201 -61 * 324 221 177 18 chr1 64202064 64202177 -217991487 - L2 LINE L2 -3 3269 3139 193 333 49 0 chr1 64202817 64202898 -217990766 - L2 LINE L2 -51 3221 3137 226 314 49 29 chr1 64203439 64203541 -217990123 - MIR SINE MIR -84 124 21 1792 171 21 0 chr1 64204589 64204875 -217988789 + AluJb SINE Alu 9 300 -12 276 267 56 0 chr1 64204918 64205008 -217988656 - MIR SINE MIR -94 168 74 258 271 85 50 chr1 64205082 64205261 -217988403 - MIR SINE MIR -65 197 15 190 267 0 0 chr1 64205732 64205777 -217987887 - MIR SINE MIR -133 75 31 198 320 26 13 chr1 64205792 64205870 -217987794 - L2 LINE L2 -8 3264 3186 308 338 134 10 chr1 64206621 64206822 -217986842 - MIR SINE MIR -11 251 26 185 310 88 70 chr1 64207295 64207466 -217986198 + MIR SINE MIR 25 198 -64 500 224 119 8 chr1 64208124 64208258 -217985406 + Charlie8 DNA MER1_type 1 149 -2268 341 197 28 0 chr1 64208414 64208485 -217985179 + Charlie8 DNA MER1_type 2335 2407 -10 229 289 60 0 chr1 64209020 64209103 -217984561 + MIR SINE MIR 56 143 -119 2134 108 24 0 chr1 64209146 64209442 -217984222 + AluSx SINE Alu 1 303 -9 187 304 130 0 chr1 64210418 64210487 -217983177 - L2 LINE L2 -88 3184 3107 355 216 96 132 chr1 64211148 64211315 -217982349 + MIR3 SINE MIR 37 197 -11 207 269 69 91 chr1 64211887 64211920 -217981744 + MIR SINE MIR 86 118 -144 2010 145 0 0 chr1 64211920 64212246 -217981418 + AluSx SINE Alu 1 326 0 207 269 69 91 chr1 64212246 64212386 -217981278 + MIR SINE MIR 118 256 -6 189 0 0 0 chr1 64213626 64213647 -217980017 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 64213649 64213671 -217979993 + AT_rich Low_complexity Low_complexity 1 22 0 245 313 9 9 chr1 64214157 64214272 -217979392 - MER103 DNA DNA -10 156 42 449 311 129 0 chr1 64215355 64215564 -217978100 + MIR SINE MIR 8 243 -19 363 262 57 16 chr1 64217293 64217415 -217976249 - MIR SINE MIR -51 211 85 409 265 26 26 chr1 64218398 64218515 -217975149 - L2 LINE L2 0 3313 3197 180 0 0 0 chr1 64218531 64218551 -217975113 + (TA)n Simple_repeat Simple_repeat 1 20 0 844 140 0 0 chr1 64218551 64218665 -217974999 - FLAM_C SINE Alu -29 114 1 312 241 152 32 chr1 64218666 64218824 -217974840 - L2 LINE L2 -108 3205 3029 189 200 100 0 chr1 64218910 64218960 -217974704 + MIR3 SINE MIR 131 185 -23 313 215 103 0 chr1 64219362 64219469 -217974195 - MIR SINE MIR -99 163 46 310 320 82 0 chr1 64219952 64220074 -217973590 + L2 LINE L2 3182 3313 0 401 258 101 31 chr1 64220559 64220718 -217972946 + MIR SINE MIR 20 189 -73 311 228 20 69 chr1 64222172 64222273 -217971391 + MIR SINE MIR 58 153 -55 369 62 0 0 chr1 64224039 64224087 -217969577 + (TTCGG)n Simple_repeat Simple_repeat 5 52 0 183 80 0 0 chr1 64224982 64225007 -217968657 + (A)n Simple_repeat Simple_repeat 1 25 0 194 290 41 48 chr1 64225007 64225152 -217968512 - MER5A DNA MER1_type -38 151 8 208 300 167 0 chr1 64225270 64225360 -217968304 - L2 LINE L2 -16 3256 3152 229 162 0 0 chr1 64226643 64226680 -217966984 + L2 LINE L2 3220 3256 -16 2491 66 0 0 chr1 64227049 64227350 -217966314 + AluY SINE Alu 1 301 -10 182 217 11 130 chr1 64227695 64227787 -217965877 - L2 LINE L2 -1 3312 3232 303 96 0 0 chr1 64228192 64228244 -217965420 + (A)n Simple_repeat Simple_repeat 1 52 0 885 170 0 7 chr1 64228416 64228557 -217965107 - AluJo SINE Alu -161 151 12 876 211 48 29 chr1 64228888 64229097 -217964567 + MLT1B LTR MaLR 11 223 -167 525 217 0 19 chr1 64229538 64229644 -217964020 + AluSq/x SINE Alu 4 107 -205 608 67 22 0 chr1 64229677 64229766 -217963898 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 287 258 0 0 chr1 64230014 64230080 -217963584 - MIR3 SINE MIR -43 165 100 260 359 42 7 chr1 64230079 64230221 -217963443 - MIR SINE MIR -85 177 31 * 360 188 0 0 chr1 64230489 64230549 -217963115 + Alu SINE Alu 2 55 -245 2348 99 7 0 chr1 64230549 64230851 -217962813 + AluSx SINE Alu 9 312 0 1963 170 0 3 chr1 64230863 64231174 -217962490 + AluJb SINE Alu 1 310 -2 619 203 8 16 chr1 64231480 64231603 -217962061 - FLAM_C SINE Alu -11 132 11 259 245 21 11 chr1 64231622 64231716 -217961948 + CT-rich Low_complexity Low_complexity 1 95 0 182 270 241 23 chr1 64232017 64232191 -217961473 + MIR SINE MIR 33 244 -18 260 325 63 8 chr1 64232970 64233096 -217960568 + MIR SINE MIR 50 182 -80 386 81 20 212 chr1 64233370 64233469 -217960195 - MADE1 DNA Mariner 0 80 1 303 269 85 39 chr1 64233875 64234005 -217959659 + L2 LINE L2 3136 3271 -1 257 326 189 8 chr1 64234025 64234157 -217959507 + L2 LINE L2 3097 3252 -20 231 114 0 0 chr1 64234726 64234761 -217958903 + (TG)n Simple_repeat Simple_repeat 2 36 0 368 295 47 9 chr1 64237602 64237742 -217955922 - MIR SINE MIR -65 143 34 421 289 47 0 chr1 64238767 64238895 -217954769 + MIR SINE MIR 84 217 -45 235 231 56 46 chr1 64239367 64239475 -217954189 - MIR SINE MIR -46 216 108 372 261 123 8 chr1 64241255 64241385 -217952279 + MIR SINE MIR 48 192 -70 533 227 122 48 chr1 64241950 64242179 -217951485 + MIR SINE MIR 7 252 -10 186 305 144 42 chr1 64243021 64243188 -217950476 - L2 LINE L2 -9 3263 3080 1836 136 0 0 chr1 64243327 64243585 -217950079 - AluSx SINE Alu -11 301 44 192 238 191 0 chr1 64243679 64243742 -217949922 + L2 LINE L2 3233 3307 -6 * 218 280 169 17 chr1 64243741 64243859 -217949805 + MIR3 SINE MIR 6 141 -67 191 158 158 0 chr1 64245162 64245200 -217948464 + MIR SINE MIR 17 60 -148 495 270 135 19 chr1 64245328 64245543 -217948121 - MIR SINE MIR 0 262 23 351 284 20 47 chr1 64246107 64246255 -217947409 - MIR SINE MIR -41 221 78 455 185 83 38 chr1 64246600 64246757 -217946907 - L1MA8 LINE L1 -2 6289 6126 254 122 0 20 chr1 64246794 64246843 -217946821 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 216 229 17 59 chr1 64247808 64247926 -217945738 + (CCCCG)n Simple_repeat Simple_repeat 4 116 0 320 270 93 132 chr1 64247926 64248282 -217945382 - L1M2 LINE L1 -5750 1099 758 293 284 56 31 chr1 64248340 64248502 -217945162 + MIR3 SINE MIR 22 187 -21 446 284 89 15 chr1 64248558 64248750 -217944914 - MIR SINE MIR -33 229 18 468 264 195 23 chr1 64249477 64249738 -217943926 - L2 LINE L2 0 3313 3008 2322 113 0 0 chr1 64250396 64250706 -217942958 + AluSx SINE Alu 1 310 -2 3716 227 24 10 chr1 64250710 64251954 -217941710 - L1MB7 LINE L1 -17 6167 4903 815 154 0 0 chr1 64252048 64252165 -217941499 + FLAM_C SINE Alu 1 117 -16 276 127 0 0 chr1 64252165 64252220 -217941444 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 516 232 107 0 chr1 64252312 64252424 -217941240 - FLAM_C SINE Alu -8 125 2 2402 102 0 0 chr1 64252461 64252766 -217940898 + AluSx SINE Alu 1 305 -7 229 352 48 9 chr1 64253696 64253801 -217939863 + MIR3 SINE MIR 83 191 -17 585 282 64 23 chr1 64253958 64254178 -217939486 - MIR SINE MIR -13 249 21 274 220 17 0 chr1 64254406 64254465 -217939199 + L2 LINE L2 3008 3067 -246 990 143 0 0 chr1 64254472 64254653 -217939011 - FLAM_C SINE Alu 0 181 1 586 274 27 54 chr1 64254675 64254898 -217938766 + L2 LINE L2 3073 3289 -24 1361 166 157 3 chr1 64254898 64255230 -217938434 - MER69 DNA AcHobo -5 2521 2139 248 89 0 44 chr1 64255332 64255377 -217938287 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 2271 120 0 0 chr1 64255377 64255686 -217937978 + AluSc SINE Alu 1 309 0 443 313 69 6 chr1 64257208 64257368 -217936296 - MIR SINE MIR -92 170 1 406 293 47 0 chr1 64257541 64257647 -217936017 - MIR3 SINE MIR -38 170 60 184 355 65 0 chr1 64257763 64257870 -217935794 - L2 LINE L2 -346 2968 2855 1025 102 0 0 chr1 64257995 64258123 -217935541 - FLAM_C SINE Alu -5 128 1 248 276 29 48 chr1 64258349 64258454 -217935210 + MIR3 SINE MIR 97 199 -9 269 315 22 33 chr1 64258730 64258822 -217934842 + L2 LINE L2 3173 3263 -9 230 253 127 25 chr1 64258952 64259031 -217934633 + L3 LINE CR1 1331 1417 -160 1332 181 15 27 chr1 64259049 64259308 -217934356 - MLT1A1 LTR MaLR -109 256 1 2451 64 0 32 chr1 64259404 64259718 -217933946 - AluY SINE Alu -7 304 1 22 56 0 0 chr1 64260168 64260204 -217933460 + AT_rich Low_complexity Low_complexity 1 36 0 2400 109 0 0 chr1 64260324 64260636 -217933028 + AluSx SINE Alu 1 312 0 266 252 163 49 chr1 64261155 64261278 -217932386 - MIR SINE MIR -72 190 54 365 233 0 33 chr1 64262347 64262437 -217931227 + MIR SINE MIR 162 248 -14 274 341 126 8 chr1 64262672 64262880 -217930784 + MIR SINE MIR 20 256 -6 2351 83 0 10 chr1 64263990 64264291 -217929373 - AluSx SINE Alu -14 298 1 682 291 76 8 chr1 64264866 64265103 -217928561 + MIR SINE MIR 2 254 -8 370 304 142 7 chr1 64265124 64265272 -217928392 + MIR SINE MIR 46 213 -49 2565 59 0 7 chr1 64265960 64266267 -217927397 - AluY SINE Alu -6 305 1 3016 162 45 54 chr1 64266284 64266913 -217926751 + L1MB8 LINE L1 5550 6172 -6 2343 70 3 7 chr1 64267195 64267495 -217926169 - AluSg1 SINE Alu -10 299 1 2149 103 7 7 chr1 64267743 64268043 -217925621 - AluSg SINE Alu -10 300 1 736 84 0 0 chr1 64268058 64268153 -217925511 + L1M4 LINE L1 5550 5644 -540 189 121 0 0 chr1 64268177 64268210 -217925454 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 207 319 73 73 chr1 64268282 64268701 -217924963 + L2 LINE L2 2807 3304 -9 204 266 133 26 chr1 64269178 64269291 -217924373 + MIR SINE MIR 32 156 -106 26 0 0 0 chr1 64269314 64269340 -217924324 + AT_rich Low_complexity Low_complexity 1 26 0 208 250 158 25 chr1 64269686 64269806 -217923858 + MIR3 SINE MIR 23 158 -50 237 208 21 0 chr1 64269828 64269876 -217923788 - L2 LINE L2 -11 3302 3254 349 253 112 28 chr1 64269908 64270042 -217923622 - MIR SINE MIR -63 145 3 389 171 26 0 chr1 64270413 64270489 -217923175 + MIR SINE MIR 70 147 -115 2426 95 0 0 chr1 64270615 64270921 -217922743 - AluSx SINE Alu -6 306 1 434 230 66 119 chr1 64271391 64271617 -217922047 - MIR SINE MIR -42 220 7 310 331 78 12 chr1 64272081 64272247 -217921417 + MER5B DNA MER1_type 2 178 0 252 297 0 0 chr1 64272343 64272407 -217921257 - tRNA-Ile-ATT tRNA tRNA -5 72 9 2215 99 7 7 chr1 64272491 64272785 -217920879 + AluSc SINE Alu 1 294 -15 1731 134 0 19 chr1 64272861 64273122 -217920542 - AluJo SINE Alu -52 260 5 392 313 41 27 chr1 64273435 64273582 -217920082 - MIR3 SINE MIR -6 202 54 290 291 80 53 chr1 64273738 64273889 -217919775 - MIR3 SINE MIR -51 157 3 404 224 43 17 chr1 64276335 64276451 -217917213 - MIR3 SINE MIR -26 182 64 183 159 182 0 chr1 64276836 64276880 -217916784 + L2 LINE L2 3212 3263 -9 228 35 0 0 chr1 64277348 64277377 -217916287 + (CGCGG)n Simple_repeat Simple_repeat 5 33 0 279 71 0 0 chr1 64278037 64278079 -217915585 + (TCC)n Simple_repeat Simple_repeat 3 44 0 198 156 0 0 chr1 64278068 64278113 -217915551 + (CTG)n Simple_repeat Simple_repeat 1 45 0 * 22 0 0 0 chr1 64278391 64278413 -217915251 + AT_rich Low_complexity Low_complexity 1 22 0 535 267 27 0 chr1 64278683 64278829 -217914835 + MIR SINE MIR 111 260 -2 1980 122 7 0 chr1 64279454 64279733 -217913931 - AluSg SINE Alu -16 294 14 1624 170 40 4 chr1 64280652 64280929 -217912735 + AluSx SINE Alu 1 287 -25 25 0 0 0 chr1 64281572 64281597 -217912067 + AT_rich Low_complexity Low_complexity 1 25 0 474 229 102 36 chr1 64281946 64282112 -217911552 + MIR SINE MIR 80 256 -6 1905 115 65 0 chr1 64282121 64282399 -217911265 - AluSx SINE Alu -15 297 2 402 157 29 78 chr1 64282739 64282841 -217910823 - MIR SINE MIR -50 212 116 227 376 53 30 chr1 64283035 64283168 -217910496 - MIR3 SINE MIR -62 146 11 541 239 28 0 chr1 64283827 64283936 -217909728 - L2 LINE L2 -2 3311 3200 590 244 141 0 chr1 64283940 64284096 -217909568 - MIR SINE MIR -45 217 40 3643 119 41 14 chr1 64284876 64285388 -217908276 - MER1A DNA MER1_type 0 527 2 297 267 9 35 chr1 64285485 64285601 -217908063 + (TA)n Simple_repeat Simple_repeat 1 113 0 253 265 29 0 chr1 64285608 64285676 -217907988 - L2 LINE L2 0 3272 3203 1013 89 0 30 chr1 64285739 64285874 -217907790 + AluSg SINE Alu 1 131 -179 569 295 22 5 chr1 64286227 64286451 -217907213 + L1ME3 LINE L1 4958 5185 -961 2760 105 5 18 chr1 64286472 64286852 -217906812 - THE1C LTR MaLR 0 375 1 775 191 22 7 chr1 64286864 64287102 -217906562 + MER58B DNA MER1_type 32 340 -1 1995 222 87 63 chr1 64287102 64287931 -217905733 + L1ME3 LINE L1 5175 6097 -65 327 146 0 0 chr1 64288334 64288389 -217905275 + (GA)n Simple_repeat Simple_repeat 2 56 0 1452 222 89 53 chr1 64288514 64288628 -217905036 + MLT1C LTR MaLR 1 109 -358 2202 114 0 0 chr1 64288628 64288926 -217904738 - AluY SINE Alu -13 298 1 1452 222 89 53 chr1 64288926 64289261 -217904403 + MLT1C LTR MaLR 109 466 -1 227 254 125 73 chr1 64289358 64289495 -217904169 + L2 LINE L2 2930 3058 -255 2145 118 0 10 chr1 64289495 64289801 -217903863 - AluSq SINE Alu -10 303 1 227 254 125 73 chr1 64289801 64289940 -217903724 + L2 LINE L2 3058 3308 -5 970 224 40 28 chr1 64290515 64290765 -217902899 - MIR SINE MIR -5 257 5 357 281 83 10 chr1 64290802 64290898 -217902766 - MIR SINE MIR -111 151 49 457 321 206 31 chr1 64290899 64291345 -217902319 + L2 LINE L2 2272 2795 -519 249 33 0 0 chr1 64291473 64291503 -217902161 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2000 167 38 44 chr1 64291578 64291887 -217901777 - L1MB8 LINE L1 -14 6164 5858 2304 122 0 0 chr1 64291887 64292198 -217901466 - AluSx SINE Alu -1 311 1 2000 167 38 44 chr1 64292198 64292362 -217901302 - L1MB8 LINE L1 -320 5858 5694 2168 231 29 25 chr1 64292365 64292876 -217900788 - L2 LINE L2 -520 2794 2282 1976 90 93 4 chr1 64293000 64293278 -217900386 - AluSx SINE Alu -9 303 1 364 317 31 56 chr1 64293339 64293452 -217900212 + MIR3 SINE MIR 18 127 -81 2323 105 3 0 chr1 64293452 64293756 -217899908 - AluSx SINE Alu -7 305 1 364 317 31 56 chr1 64293756 64293803 -217899861 + MIR3 SINE MIR 127 174 -34 375 23 0 0 chr1 64293998 64294042 -217899622 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 6834 50 15 35 chr1 64294046 64294983 -217898681 - L1PA7 LINE L1 -8 6146 5206 4309 83 8 53 chr1 64295077 64295488 -217898176 - L1PA7 LINE L1 -923 5223 4858 3723 38 0 0 chr1 64295488 64295933 -217897731 - L1PA3 LINE L1 -3 6152 5708 4309 83 8 53 chr1 64295933 64296256 -217897408 - L1PA7 LINE L1 -1288 4858 4522 29 70 0 0 chr1 64296586 64296643 -217897021 + AT_rich Low_complexity Low_complexity 1 57 0 334 250 21 21 chr1 64296833 64296929 -217896735 + MIR SINE MIR 52 147 -115 766 161 0 8 chr1 64297034 64297164 -217896500 + FLAM_C SINE Alu 4 132 -1 24 0 0 0 chr1 64297535 64297559 -217896105 + AT_rich Low_complexity Low_complexity 1 24 0 2285 80 24 0 chr1 64297620 64297909 -217895755 + AluSg SINE Alu 1 296 -14 1701 152 45 45 chr1 64298032 64298342 -217895322 + AluSg SINE Alu 1 310 0 1331 99 0 80 chr1 64299036 64299187 -217894477 + AluSx SINE Alu 1 134 -178 1641 103 22 116 chr1 64299187 64299498 -217894166 + AluYb8 SINE Alu 25 306 -12 1331 99 0 80 chr1 64299498 64299547 -217894117 + AluSx SINE Alu 134 185 -127 262 315 148 12 chr1 64299714 64299876 -217893788 - MIR3 SINE MIR -21 187 4 2229 114 45 28 chr1 64300167 64300525 -217893139 + THE1B LTR MaLR 1 364 0 253 284 30 60 chr1 64300529 64300663 -217893001 - MIR SINE MIR -25 237 108 186 103 0 0 chr1 64300669 64300698 -217892966 + (TATG)n Simple_repeat Simple_repeat 2 30 0 8825 135 22 8 chr1 64300751 64302226 -217891438 + Tigger1 DNA MER2_type 1 1497 -921 1880 152 152 10 chr1 64302228 64302635 -217891029 + Tigger1 DNA MER2_type 1954 2418 0 1371 107 0 0 chr1 64302861 64303039 -217890625 - AluSg/x SINE Alu 0 310 133 1742 176 3 14 chr1 64303045 64303378 -217890286 - AluSx SINE Alu 0 312 1 1016 288 125 61 chr1 64303964 64304766 -217888898 + L1MEc LINE L1 31 780 -5616 1986 153 13 0 chr1 64304766 64305074 -217888590 + AluSx SINE Alu 1 312 0 1016 288 125 61 chr1 64305074 64305790 -217887874 + L1MEc LINE L1 780 1646 -4750 31 0 0 0 chr1 64305844 64305875 -217887789 + AT_rich Low_complexity Low_complexity 1 31 0 415 161 46 0 chr1 64305875 64305962 -217887702 + L1MEc LINE L1 1627 1717 -4679 1069 90 0 0 chr1 64305962 64306095 -217887569 + AluSq/x SINE Alu 1 133 -179 2159 119 0 7 chr1 64306099 64306394 -217887270 + AluSq SINE Alu 1 293 -20 803 278 72 20 chr1 64306659 64306965 -217886699 + HERV16 LTR ERVL 351 672 -4324 481 150 12 0 chr1 64307141 64307221 -217886443 + MLT2D LTR ERVL 28 108 -306 2026 138 17 3 chr1 64307221 64307519 -217886145 - AluSx SINE Alu -8 304 3 22 0 0 0 chr1 64307519 64307541 -217886123 + AT_rich Low_complexity Low_complexity 1 22 0 11134 93 2 18 chr1 64307570 64308791 -217884873 - THE1B-int LTR MaLR 0 1580 388 22928 60 16 0 chr1 64308791 64312558 -217881106 + L1PA6 LINE L1 2325 6145 -9 11134 93 2 18 chr1 64312558 64312941 -217880723 - THE1B-int LTR MaLR -1192 388 1 2068 126 48 28 chr1 64312941 64313298 -217880366 - THE1B LTR MaLR 0 364 1 2146 139 3 0 chr1 64313654 64313963 -217879701 + AluSq SINE Alu 1 310 -3 463 361 64 19 chr1 64314031 64314344 -217879320 - L2 LINE L2 -338 2976 2650 1888 148 0 58 chr1 64314593 64314804 -217878860 - AluSx SINE Alu -1 311 124 2156 99 7 0 chr1 64314804 64315137 -217878527 + AluSp SINE Alu 1 313 0 1888 148 0 58 chr1 64315137 64315255 -217878409 - AluSx SINE Alu -188 124 1 1444 133 4 9 chr1 64315272 64315497 -217878167 - AluJb SINE Alu -3 309 86 2012 305 124 13 chr1 64315505 64316508 -217877156 - L2 LINE L2 -962 2352 1239 1776 126 70 40 chr1 64317390 64317692 -217875972 - AluJb SINE Alu -1 311 1 265 311 39 10 chr1 64317988 64318091 -217875573 - MER20 DNA MER1_type -4 215 110 202 321 111 0 chr1 64318226 64318307 -217875357 - MIR SINE MIR -117 145 56 1685 189 3 7 chr1 64318371 64318668 -217874996 + AluJo SINE Alu 1 296 -16 309 266 40 116 chr1 64318797 64318970 -217874694 + L3b LINE CR1 1127 1286 -297 1837 159 3 10 chr1 64319453 64319748 -217873916 + AluJb SINE Alu 1 293 -19 505 251 43 70 chr1 64320156 64320343 -217873321 - L2 LINE L2 -5 3308 3127 2095 96 32 0 chr1 64320470 64320752 -217872912 + AluSx SINE Alu 11 301 -11 27 0 0 0 chr1 64320798 64320825 -217872839 + AT_rich Low_complexity Low_complexity 1 27 0 1553 127 102 66 chr1 64320862 64321224 -217872440 + THE1C LTR MaLR 1 375 0 6821 140 161 18 chr1 64321225 64322484 -217871180 + THE1C-int LTR MaLR 1 1477 -103 2266 111 0 0 chr1 64322484 64322782 -217870882 - AluSq SINE Alu -15 298 1 6821 140 161 18 chr1 64322782 64322904 -217870760 + THE1C-int LTR MaLR 1477 1580 0 1803 125 91 53 chr1 64322904 64323265 -217870399 + THE1C LTR MaLR 1 375 0 243 196 58 87 chr1 64323265 64323403 -217870261 + L1ME4a LINE L1 5986 6119 -2 198 261 159 34 chr1 64323432 64323520 -217870144 + L3b LINE CR1 1294 1392 -191 732 296 88 0 chr1 64323708 64323948 -217869716 + MIR SINE MIR 2 262 0 217 260 55 55 chr1 64323954 64324027 -217869637 + L2 LINE L2 3195 3267 -46 188 298 0 0 chr1 64324176 64324223 -217869441 - MIR SINE MIR -128 134 88 390 231 0 44 chr1 64324353 64324444 -217869220 + L2 LINE L2 3186 3272 0 511 246 135 35 chr1 64326111 64326399 -217867265 - MLT1I LTR MaLR 0 409 93 329 227 11 45 chr1 64326796 64326884 -217866780 + L2 LINE L2 3229 3313 0 261 57 0 0 chr1 64327114 64327149 -217866515 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr1 64327563 64327584 -217866080 + AT_rich Low_complexity Low_complexity 1 21 0 2308 94 0 16 chr1 64327759 64328066 -217865598 + AluYa5 SINE Alu 1 302 -9 2404 81 0 16 chr1 64329737 64330046 -217863618 - AluY SINE Alu -7 304 1 1748 167 43 4 chr1 64330561 64330842 -217862822 + AluSx SINE Alu 1 292 -20 29 28 0 0 chr1 64331252 64331288 -217862376 + AT_rich Low_complexity Low_complexity 1 36 0 849 158 0 8 chr1 64331289 64331422 -217862242 - AluSq/x SINE Alu -181 132 1 189 280 160 10 chr1 64332420 64332520 -217861144 - L2 LINE L2 -40 3273 3159 1928 151 7 3 chr1 64332679 64332977 -217860687 + AluSx SINE Alu 1 299 -13 235 313 10 42 chr1 64333010 64333106 -217860558 - L2 LINE L2 0 3313 3221 294 335 107 25 chr1 64333271 64333468 -217860196 - L2 LINE L2 -337 2977 2765 2414 133 14 8 chr1 64333534 64333896 -217859768 + THE1B LTR MaLR 1 364 0 228 371 15 40 chr1 64334038 64334240 -217859424 + L2 LINE L2 2412 2608 -706 974 137 0 0 chr1 64334342 64334481 -217859183 - AluJ SINE Alu -16 296 158 565 191 0 0 chr1 64334489 64334594 -217859070 - AluJ SINE Alu -207 105 1 2597 288 82 56 chr1 64334703 64335116 -217858548 + L2 LINE L2 1603 2004 -1309 2464 67 0 13 chr1 64335116 64335431 -217858233 - AluY SINE Alu 0 311 1 2597 288 82 56 chr1 64335431 64336551 -217857113 + L2 LINE L2 2004 3187 -126 1902 209 40 23 chr1 64336551 64337024 -217856640 + MER31A LTR ERV1 5 485 0 2597 288 82 56 chr1 64337024 64337155 -217856509 + L2 LINE L2 3187 3313 0 185 174 0 159 chr1 64337288 64337357 -217856307 - L3b LINE CR1 0 1583 1526 213 279 164 66 chr1 64338347 64338469 -217855195 - MIR3 SINE MIR -16 192 59 233 245 38 28 chr1 64338470 64338576 -217855088 + L1MC4 LINE L1 6597 6703 -1339 225 247 54 0 chr1 64338531 64338624 -217855040 - L1MC4 LINE L1 -1334 6708 6611 * 1645 170 32 0 chr1 64338636 64338913 -217854751 - AluJb SINE Alu -26 286 1 354 262 105 49 chr1 64339049 64339476 -217854188 + L1MC5 LINE L1 7476 7926 -35 2095 66 3 45 chr1 64339918 64340080 -217853584 - AluY SINE Alu -16 295 149 2269 93 3 3 chr1 64340080 64340382 -217853282 - AluSc SINE Alu -7 302 1 2095 66 3 45 chr1 64340382 64340506 -217853158 - AluY SINE Alu -162 149 21 379 275 62 74 chr1 64340618 64340796 -217852868 + MIR SINE MIR 45 219 -43 197 33 33 0 chr1 64341325 64341355 -217852309 + (TA)n Simple_repeat Simple_repeat 1 31 0 202 147 63 126 chr1 64341595 64341690 -217851974 + MIR SINE MIR 128 216 -46 222 167 24 0 chr1 64341945 64341987 -217851677 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 125 0 0 chr1 64343321 64343353 -217850311 + (TA)n Simple_repeat Simple_repeat 2 33 0 797 191 8 0 chr1 64343354 64343485 -217850179 - FLAM_C SINE Alu 0 133 2 788 161 0 0 chr1 64343647 64343765 -217849899 - MSTB1 LTR MaLR -310 122 5 416 240 83 18 chr1 64344114 64344354 -217849310 + L1MDb LINE L1 1137 1408 -4988 310 305 71 0 chr1 64345010 64345164 -217848500 + L1MDb LINE L1 1291 1455 -4953 387 262 38 105 chr1 64345257 64345467 -217848197 + L1MDb LINE L1 1635 1830 -4757 2272 85 7 0 chr1 64345467 64345771 -217847893 + AluSx SINE Alu 1 306 0 343 85 0 0 chr1 64345771 64345818 -217847846 + Alu SINE Alu 246 292 -8 446 301 33 0 chr1 64345836 64346019 -217847645 + L1MDb LINE L1 1825 2013 -4574 376 335 70 5 chr1 64346031 64346216 -217847448 + L1MDb LINE L1 2074 2270 -4317 754 141 0 0 chr1 64346673 64346794 -217846870 - AluJo SINE Alu -2 310 190 924 190 0 0 chr1 64346808 64346971 -217846693 - AluSg/x SINE Alu -9 303 141 1191 144 0 40 chr1 64346973 64347174 -217846490 - AluJo SINE Alu -119 193 1 2011 143 3 10 chr1 64347284 64347592 -217846072 + AluSx SINE Alu 1 306 -6 29 28 0 0 chr1 64347594 64347630 -217846034 + AT_rich Low_complexity Low_complexity 1 36 0 1605 160 56 0 chr1 64347727 64347995 -217845669 + AluJb SINE Alu 16 298 -14 289 211 0 0 chr1 64348284 64348336 -217845328 + L2 LINE L2 3221 3272 0 253 263 138 0 chr1 64348816 64348896 -217844768 + MIR SINE MIR 121 211 -51 1372 227 109 23 chr1 64349325 64349721 -217843943 - L1ME3A LINE L1 -63 6107 5678 29 28 0 0 chr1 64349761 64349797 -217843867 + AT_rich Low_complexity Low_complexity 1 36 0 333 57 14 43 chr1 64350414 64350484 -217843180 - HSMAR2 DNA Mariner -7 1295 1228 7361 127 30 35 chr1 64350520 64350536 -217843128 - HSMAR2 DNA Mariner -43 1259 1244 764 131 0 33 chr1 64350536 64350658 -217843006 - FLAM_C SINE Alu -15 118 1 7361 127 30 35 chr1 64350658 64351139 -217842525 - HSMAR2 DNA Mariner -58 1244 762 1522 148 42 25 chr1 64351139 64351460 -217842204 - AluJo SINE Alu 0 326 1 7361 127 30 35 chr1 64351460 64351889 -217841775 - HSMAR2 DNA Mariner -540 762 335 1723 186 7 0 chr1 64351889 64352185 -217841479 + AluJo SINE Alu 1 298 -14 7361 127 30 35 chr1 64352185 64352510 -217841154 - HSMAR2 DNA Mariner -967 335 10 25 51 0 0 chr1 64352567 64352606 -217841058 + AT_rich Low_complexity Low_complexity 1 39 0 223 371 0 27 chr1 64352728 64352880 -217840784 + MIR SINE MIR 31 176 -32 375 105 0 0 chr1 64352927 64352984 -217840680 + (CA)n Simple_repeat Simple_repeat 2 58 0 1954 122 30 24 chr1 64353149 64353445 -217840219 - AluSx SINE Alu -14 298 1 1213 212 9 52 chr1 64353584 64353914 -217839750 - L1ME3A LINE L1 -502 5668 5353 426 289 62 16 chr1 64354254 64354382 -217839282 - L2 LINE L2 -1 3271 3138 183 299 169 0 chr1 64354657 64354734 -217838930 - L2 LINE L2 -9 3263 3174 341 335 193 15 chr1 64355605 64355802 -217837862 + MIR SINE MIR 2 233 -29 1956 34 0 0 chr1 64356261 64356498 -217837166 + L1PA2 LINE L1 5918 6154 -1 429 322 0 0 chr1 64357105 64357220 -217836444 - L3 LINE CR1 -11 1566 1452 2220 101 28 0 chr1 64357248 64357536 -217836128 + AluSx SINE Alu 1 296 -16 263 165 18 220 chr1 64357541 64357650 -217836014 + MIR SINE MIR 29 115 -147 292 280 40 0 chr1 64357935 64358010 -217835654 - L3 LINE CR1 -239 1338 1261 418 289 103 16 chr1 64358309 64358503 -217835161 - MLT1J LTR MaLR -14 497 287 604 236 21 58 chr1 64358545 64358736 -217834928 - MLT1J LTR MaLR -317 194 11 262 258 15 0 chr1 64359708 64359774 -217833890 - L3 LINE CR1 -124 1453 1387 664 245 167 5 chr1 64359801 64359993 -217833671 + MIR SINE MIR 29 251 -11 1970 155 3 0 chr1 64360178 64360488 -217833176 - AluJb SINE Alu -1 311 1 1755 153 11 11 chr1 64361176 64361463 -217832201 + AluJb SINE Alu 14 300 -12 295 349 48 0 chr1 64362224 64362307 -217831357 - L2 LINE L2 -49 3223 3137 469 317 94 17 chr1 64363451 64363631 -217830033 - MIR SINE MIR -51 211 18 1824 187 57 72 chr1 64364198 64364711 -217828953 + MLT1D LTR MaLR 1 505 0 1822 154 13 7 chr1 64365721 64366026 -217827638 - AluSx SINE Alu -3 309 3 2423 83 0 3 chr1 64366765 64367065 -217826599 - AluSc SINE Alu -10 299 1 535 364 68 46 chr1 64367071 64367684 -217825980 + L2 LINE L2 1932 2558 -756 204 288 102 68 chr1 64367692 64367806 -217825858 + L2 LINE L2 2909 3033 -239 2485 154 16 21 chr1 64367806 64368242 -217825422 + Tigger2a DNA MER2_type 1 434 0 204 288 102 68 chr1 64368242 64368304 -217825360 + L2 LINE L2 3033 3091 -181 859 275 114 66 chr1 64368421 64368435 -217825229 - L2 LINE L2 -5 3308 3296 8131 38 4 0 chr1 64368435 64370204 -217823460 - L1PA5 LINE L1 -5 6149 4376 859 275 114 66 chr1 64370204 64370851 -217822813 - L2 LINE L2 -17 3296 2582 983 213 51 0 chr1 64370851 64371048 -217822616 - MER3 DNA MER1_type -2 207 1 859 275 114 66 chr1 64371048 64371345 -217822319 - L2 LINE L2 -731 2582 2301 309 255 21 106 chr1 64371599 64371740 -217821924 - L2 LINE L2 -45 3268 3140 4295 239 120 29 chr1 64371748 64373122 -217820542 - L2 LINE L2 -302 3011 1521 231 269 15 0 chr1 64373122 64373189 -217820475 - L2 LINE L2 -2526 788 721 472 252 48 0 chr1 64373197 64373300 -217820364 - L2 LINE L2 -1100 2214 2107 317 355 97 16 chr1 64373313 64373499 -217820165 - L2 LINE L2 -2606 708 508 652 213 104 79 chr1 64373587 64373953 -217819711 + L1MC5 LINE L1 7188 7562 -399 464 224 142 60 chr1 64374367 64374487 -217819177 + L1ME3A LINE L1 5566 5675 -495 2388 166 31 12 chr1 64374487 64374904 -217818760 - MSTB LTR MaLR -1 425 1 464 224 142 60 chr1 64374904 64374955 -217818709 + L1ME3A LINE L1 5675 5720 -450 2363 93 3 0 chr1 64374955 64375255 -217818409 - AluSp SINE Alu -12 301 1 464 224 142 60 chr1 64375255 64375363 -217818301 + L1ME3A LINE L1 5720 5869 -301 290 354 82 32 chr1 64376574 64376732 -217816932 - L2 LINE L2 -232 3040 2875 235 300 181 0 chr1 64376880 64377026 -217816638 + L2 LINE L2 3134 3292 -21 2146 113 0 7 chr1 64377507 64377807 -217815857 + AluSx SINE Alu 1 298 -14 420 37 0 0 chr1 64377955 64378009 -217815655 + (CA)n Simple_repeat Simple_repeat 2 55 0 898 199 151 50 chr1 64378077 64378236 -217815428 - L1MC5 LINE L1 -106 7855 7713 2490 53 0 20 chr1 64378236 64378540 -217815124 - AluY SINE Alu -13 298 1 898 199 151 50 chr1 64378540 64378818 -217814846 - L1MC5 LINE L1 -248 7713 7374 303 193 14 0 chr1 64378829 64378896 -217814768 - FLAM SINE Alu -4 129 84 520 147 0 0 chr1 64379043 64379118 -217814546 - AluJ/FLAM SINE Alu -237 75 1 25 31 0 0 chr1 64379901 64379933 -217813731 + AT_rich Low_complexity Low_complexity 1 32 0 1976 134 45 0 chr1 64380100 64380391 -217813273 - AluSx SINE Alu -8 304 1 24 67 0 0 chr1 64380711 64380756 -217812908 + AT_rich Low_complexity Low_complexity 1 45 0 1951 158 39 11 chr1 64382542 64382897 -217810767 - MLT1A1 LTR MaLR 0 365 1 244 0 27 27 chr1 64383238 64383275 -217810389 + (TA)n Simple_repeat Simple_repeat 2 38 0 1780 167 17 0 chr1 64383275 64383562 -217810102 - AluJb SINE Alu -20 292 1 325 392 81 42 chr1 64384308 64384714 -217808950 + L2 LINE L2 2837 3258 -14 1835 155 0 45 chr1 64385084 64385393 -217808271 - AluJb SINE Alu -15 297 3 698 202 0 0 chr1 64385752 64385876 -217807788 + FLAM_C SINE Alu 1 124 -19 22 0 0 0 chr1 64385876 64385898 -217807766 + AT_rich Low_complexity Low_complexity 1 22 0 874 141 0 15 chr1 64386153 64386288 -217807376 - FLAM_C SINE Alu 0 133 1 220 179 0 0 chr1 64386431 64386470 -217807194 - MIR SINE MIR -119 143 105 186 240 0 80 chr1 64386553 64386603 -217807061 + L2 LINE L2 3218 3263 -9 186 311 34 92 chr1 64386574 64386693 -217806971 - MIR SINE MIR -150 112 1 514 264 55 0 chr1 64386870 64386980 -217806684 - L2 LINE L2 -1 3271 3156 185 287 149 11 chr1 64387026 64387113 -217806551 + MIR SINE MIR 7 105 -157 292 228 13 13 chr1 64387147 64387226 -217806438 - MER116 DNA Mariner -1 79 1 2343 181 48 6 chr1 64387655 64388180 -217805484 - L1MB7 LINE L1 0 6184 5638 3682 230 13 57 chr1 64388195 64389179 -217804485 - L1M4 LINE L1 -5571 971 31 1266 96 0 0 chr1 64389318 64389475 -217804189 + AluSg/x SINE Alu 135 291 -21 2192 75 24 17 chr1 64389687 64389979 -217803685 + AluY SINE Alu 2 295 -16 605 331 97 44 chr1 64390083 64390145 -217803519 + L2 LINE L2 2578 2635 -678 2535 62 3 0 chr1 64390145 64390453 -217803211 - AluSp SINE Alu -3 310 2 605 331 97 44 chr1 64390453 64391024 -217802640 + L2 LINE L2 2635 3252 -61 1124 179 99 77 chr1 64391240 64391643 -217802021 - Charlie1 DNA MER1_type -1 2760 2349 1163 176 53 4 chr1 64391644 64391871 -217801793 - Charlie1 DNA MER1_type -706 2055 1818 374 222 0 37 chr1 64391876 64391957 -217801707 - MIR SINE MIR -93 115 38 1861 126 30 13 chr1 64393467 64393769 -217799895 - AluJb SINE Alu -3 309 3 233 330 28 47 chr1 64393802 64393908 -217799756 + L3 LINE CR1 1447 1550 -27 408 271 14 76 chr1 64394994 64395138 -217798526 + MER5A DNA MER1_type 16 150 -39 30 27 0 0 chr1 64396937 64396974 -217796690 + AT_rich Low_complexity Low_complexity 1 37 0 367 243 90 35 chr1 64398383 64398527 -217795137 - MER103 DNA DNA -2 164 13 294 342 9 9 chr1 64399767 64399878 -217793786 + MIR3 SINE MIR 83 193 -15 2029 136 10 3 chr1 64400641 64400950 -217792714 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr1 64401920 64401941 -217791723 + (A)n Simple_repeat Simple_repeat 1 21 0 284 187 173 13 chr1 64402348 64402423 -217791241 + MIR SINE MIR 95 181 -81 1490 262 82 32 chr1 64403570 64404032 -217789632 - MLT1E2 LTR MaLR 0 626 142 239 277 43 11 chr1 64404181 64404275 -217789389 - L1ME4a LINE L1 0 6121 6025 2273 110 0 16 chr1 64405217 64405534 -217788130 - AluSx SINE Alu 0 312 1 196 368 76 35 chr1 64405983 64406154 -217787510 + L2 LINE L2 2447 2624 -690 1272 113 5 10 chr1 64408676 64408871 -217784793 - L1PA10 LINE L1 -2 6166 5973 350 247 0 107 chr1 64409348 64409498 -217784166 - MER94 DNA DNA 0 134 1 222 366 132 20 chr1 64409545 64409796 -217783868 + L2 LINE L2 2617 2895 -419 198 175 0 25 chr1 64409957 64409997 -217783667 + L2 LINE L2 3187 3225 -47 390 346 53 63 chr1 64410347 64410926 -217782738 - L2 LINE L2 -5 3267 2717 203 241 111 0 chr1 64410936 64410990 -217782674 + L2 LINE L2 3198 3257 -15 233 273 0 0 chr1 64411115 64411170 -217782494 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 306 50 0 0 chr1 64411271 64411311 -217782353 + (CA)n Simple_repeat Simple_repeat 1 40 0 266 250 98 33 chr1 64411381 64411473 -217782191 - L2 LINE L2 -202 3070 2973 21 0 0 0 chr1 64411866 64411887 -217781777 + AT_rich Low_complexity Low_complexity 1 21 0 226 383 175 13 chr1 64412500 64412803 -217780861 + L2 LINE L2 2507 2858 -456 2392 129 45 28 chr1 64412876 64413301 -217780363 + MSTB1 LTR MaLR 1 432 0 397 311 53 0 chr1 64414389 64414521 -217779143 - MIR SINE MIR -56 206 68 457 201 0 4 chr1 64414789 64414930 -217778734 - MER58B DNA MER1_type -25 316 1 279 263 45 113 chr1 64415180 64415313 -217778351 - MIR SINE MIR -30 232 109 835 266 55 15 chr1 64415333 64415613 -217778051 + L1ME LINE L1 5555 5839 -348 881 207 30 0 chr1 64415939 64416108 -217777556 + FAM SINE Alu 2 175 0 476 371 79 16 chr1 64416475 64416728 -217776936 - L2 LINE L2 -51 3221 2953 704 272 66 35 chr1 64416736 64417023 -217776641 + L2 LINE L2 3014 3309 -4 413 347 143 19 chr1 64417035 64417496 -217776168 - L2 LINE L2 -366 2948 2431 3197 212 21 41 chr1 64417561 64419041 -217774623 + L1MA5A LINE L1 2454 3825 -2321 520 143 0 36 chr1 64419060 64419144 -217774520 + AluJb SINE Alu 199 279 -33 216 0 0 0 chr1 64419148 64419172 -217774492 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 193 299 128 8 chr1 64419282 64419399 -217774265 + MIR3 SINE MIR 6 136 -72 30 0 0 0 chr1 64419403 64419433 -217774231 + AT_rich Low_complexity Low_complexity 1 30 0 759 153 0 0 chr1 64419433 64419551 -217774113 - FLAM_C SINE Alu -25 118 1 240 263 35 0 chr1 64419697 64419754 -217773910 - MER90 LTR ERV1 0 614 556 8146 160 24 7 chr1 64419756 64421280 -217772384 + L1MA5A LINE L1 3829 5378 -768 * 8769 62 19 2 chr1 64421277 64422461 -217771203 - L1P LINE L1 -2768 3378 2174 3408 53 2 7 chr1 64422461 64422896 -217770768 + L1PA6 LINE L1 5718 6151 -3 5531 124 22 13 chr1 64422903 64423610 -217770054 + L1MA5A LINE L1 5366 6084 -213 1680 148 91 26 chr1 64423610 64423962 -217769702 + THE1C LTR MaLR 1 375 0 5531 124 22 13 chr1 64423962 64424173 -217769491 + L1MA5A LINE L1 6084 6292 -5 272 321 75 67 chr1 64424279 64424413 -217769251 - L2 LINE L2 -1367 1947 1813 1584 199 34 0 chr1 64424496 64424787 -217768877 - AluJb SINE Alu -11 301 1 221 219 0 0 chr1 64426157 64426198 -217767466 - L2 LINE L2 -16 3256 3216 270 342 66 58 chr1 64426911 64427302 -217766362 - L2 LINE L2 -181 3091 2699 2035 163 25 0 chr1 64427670 64428027 -217765637 + MER47A DNA MER2_type 1 366 0 260 276 14 110 chr1 64428073 64428218 -217765446 - MIR3 SINE MIR -53 155 25 1257 205 8 4 chr1 64428939 64429198 -217764466 + L1PB4 LINE L1 5896 6155 -1 211 358 0 62 chr1 64430622 64430703 -217762961 - L2 LINE L2 -33 3239 3164 364 338 104 0 chr1 64430801 64430955 -217762709 + MIR3 SINE MIR 37 206 -2 1355 137 74 4 chr1 64431009 64431279 -217762385 - L1MA8 LINE L1 0 6291 6003 454 360 145 20 chr1 64431297 64431847 -217761817 - L2 LINE L2 0 3313 2692 317 247 116 41 chr1 64432474 64432620 -217761044 + MIR SINE MIR 82 238 -24 351 243 144 0 chr1 64432630 64432741 -217760923 + L2 LINE L2 2078 2204 -1110 2349 264 85 17 chr1 64433327 64434337 -217759327 + L2 LINE L2 2224 3307 -6 311 245 13 93 chr1 64434349 64434500 -217759164 - L1MEd LINE L1 -3963 2166 2028 2030 237 52 7 chr1 64434519 64435063 -217758601 - L1ME3A LINE L1 -147 6023 5456 6850 56 7 0 chr1 64435327 64436643 -217757021 - L1PA8 LINE L1 -2 6170 4829 784 256 84 60 chr1 64436852 64437797 -217755867 - L1MEd LINE L1 -4528 1670 693 240 332 84 26 chr1 64438081 64438271 -217755393 - L2 LINE L2 0 3313 3113 380 269 126 22 chr1 64438461 64438643 -217755021 + MLT1K LTR MaLR 387 587 -1 541 310 47 22 chr1 64438780 64438991 -217754673 - MIR SINE MIR -2 206 1 291 200 44 89 chr1 64438991 64439046 -217754618 + L2 LINE L2 3262 3312 -1 201 359 39 39 chr1 64439407 64439510 -217754154 + L2 LINE L2 3146 3248 -24 305 326 128 0 chr1 64439557 64439698 -217753966 - MIR SINE MIR -73 189 31 212 186 119 0 chr1 64441497 64441556 -217752108 - MIR SINE MIR -99 163 98 517 250 86 0 chr1 64441561 64441701 -217751963 + MER96 DNA MER1_type? 24 175 0 194 338 97 59 chr1 64442270 64442661 -217751003 + L2 LINE L2 2807 3212 -60 206 298 117 11 chr1 64442837 64442931 -217750733 + L2 LINE L2 3210 3313 0 361 315 60 47 chr1 64443612 64443761 -217749903 + L2 LINE L2 3115 3265 -7 185 297 78 0 chr1 64443809 64443873 -217749791 - L2 LINE L2 -26 3246 3178 308 271 82 0 chr1 64444770 64444855 -217748809 + MIR SINE MIR 96 187 -75 21 0 0 0 chr1 64445183 64445204 -217748460 + AT_rich Low_complexity Low_complexity 1 21 0 197 301 108 11 chr1 64445577 64445670 -217747994 - L2 LINE L2 -8 3264 3163 1787 152 0 44 chr1 64445680 64446150 -217747514 - AluJb SINE Alu 0 457 1 207 278 0 19 chr1 64446160 64446214 -217747450 - MIR SINE MIR -65 143 91 * 348 244 213 25 chr1 64446200 64446397 -217747267 - MIR SINE MIR -27 235 2 1930 174 39 0 chr1 64447351 64447685 -217745979 - MER7A DNA MER2_type 0 346 2 447 269 48 21 chr1 64447716 64447861 -217745803 + MIR SINE MIR 49 197 -65 2049 130 7 3 chr1 64447872 64448171 -217745493 + AluSg1 SINE Alu 1 300 -9 276 291 136 9 chr1 64448721 64448831 -217744833 - MIR SINE MIR -65 197 74 23 0 0 0 chr1 64449286 64449309 -217744355 + AT_rich Low_complexity Low_complexity 1 23 0 537 238 111 17 chr1 64449311 64449483 -217744181 - MIR SINE MIR -6 256 69 277 204 0 19 chr1 64449841 64449895 -217743769 + CT-rich Low_complexity Low_complexity 3 55 0 4834 219 37 74 chr1 64449952 64451920 -217741744 - L1M4 LINE L1 -1146 5000 3106 1512 204 106 44 chr1 64451914 64452025 -217741639 - L1MDa LINE L1 -4797 1743 1640 * 2148 127 0 10 chr1 64452025 64452325 -217741339 - AluSq SINE Alu -16 297 1 1512 204 106 44 chr1 64452325 64452810 -217740854 - L1MDa LINE L1 -4900 1640 1110 1383 189 104 15 chr1 64452816 64453144 -217740520 - MLT1A2 LTR MaLR -17 357 1 3906 204 48 19 chr1 64453144 64453995 -217739669 - L1MDa LINE L1 -5647 893 18 613 233 157 13 chr1 64454166 64454325 -217739339 + MER5A DNA MER1_type 8 189 0 2470 62 0 13 chr1 64454499 64454808 -217738856 - AluY SINE Alu -6 305 1 267 300 131 51 chr1 64454995 64455232 -217738432 + MIR SINE MIR 7 262 0 533 354 69 69 chr1 64456102 64456856 -217736808 + L1ME3A LINE L1 96 849 -5356 512 215 29 106 chr1 64457004 64457093 -217736571 + L1ME3A LINE L1 1002 1096 -5109 180 77 0 0 chr1 64457093 64457119 -217736545 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1767 164 0 7 chr1 64457122 64457403 -217736261 - AluJb SINE Alu -24 288 10 512 215 29 106 chr1 64457403 64457620 -217736044 + L1ME3A LINE L1 1098 1288 -4917 314 314 134 27 chr1 64457710 64457971 -217735693 + L1ME3A LINE L1 2023 2311 -4085 274 330 72 25 chr1 64458200 64458757 -217734907 + L1ME3A LINE L1 3410 3992 -2223 673 289 81 34 chr1 64458857 64459473 -217734191 + L1ME3A LINE L1 5358 6008 -231 228 163 0 0 chr1 64459678 64459721 -217733943 + (TTAGGG)n Simple_repeat Simple_repeat 5 47 0 345 302 90 36 chr1 64460708 64460873 -217732791 + MIR SINE MIR 19 191 -67 249 277 0 15 chr1 64461467 64461532 -217732132 - MIR SINE MIR -2 260 197 227 274 16 0 chr1 64461532 64461594 -217732070 + MIR SINE MIR 70 132 -130 238 293 278 21 chr1 64462259 64462450 -217731214 + MIR SINE MIR 2 241 -21 298 327 9 0 chr1 64462586 64462696 -217730968 + (TA)n Simple_repeat Simple_repeat 1 111 0 1804 177 80 30 chr1 64462726 64463265 -217730399 + MLT2A2 LTR ERVL 1 554 0 489 226 236 46 chr1 64463558 64463753 -217729911 - MIR SINE MIR -26 236 5 579 210 49 50 chr1 64464011 64464200 -217729464 - MIR3 SINE MIR -56 206 6 194 275 138 0 chr1 64464749 64464829 -217728835 - MIR SINE MIR -92 116 26 430 221 63 138 chr1 64464894 64465023 -217728641 - MIR SINE MIR -12 250 148 2781 10 0 3 chr1 64465023 64465335 -217728329 + AluYa5 SINE Alu 1 311 0 430 221 63 138 chr1 64465335 64465458 -217728206 - MIR SINE MIR -114 148 17 763 333 76 33 chr1 64465911 64466513 -217727151 + L2 LINE L2 2650 3290 -23 246 330 98 17 chr1 64466609 64466782 -217726882 - L2 LINE L2 -21 3292 3106 581 241 121 0 chr1 64466844 64467010 -217726654 + L2 LINE L2 3128 3313 0 308 299 72 36 chr1 64467022 64467216 -217726448 - L2 LINE L2 -301 3012 2812 192 278 56 56 chr1 64467403 64467493 -217726171 - L2 LINE L2 -189 3083 2994 212 351 135 0 chr1 64467765 64467876 -217725788 - L2 LINE L2 0 3313 3188 189 372 35 9 chr1 64468545 64468658 -217725006 + MIR SINE MIR 2 117 -145 245 257 86 50 chr1 64469378 64469518 -217724146 + L2 LINE L2 2442 2586 -728 439 211 128 9 chr1 64469523 64469632 -217724032 + MIR SINE MIR 97 218 -44 694 301 106 55 chr1 64469663 64470056 -217723608 + L2 LINE L2 2610 3050 -263 1233 163 49 0 chr1 64470056 64470320 -217723344 - L1MA4 LINE L1 -3 6297 6021 694 301 106 55 chr1 64470320 64470419 -217723245 + L2 LINE L2 3050 3142 -171 322 366 126 6 chr1 64471239 64471414 -217722250 - MIR SINE MIR -44 218 23 203 323 55 55 chr1 64471589 64471753 -217721911 + L3 LINE CR1 1226 1389 -188 363 239 23 11 chr1 64471796 64471884 -217721780 + L2 LINE L2 3225 3313 0 426 312 7 0 chr1 64472004 64472142 -217721522 - MIR SINE MIR -5 257 119 250 321 2 2 chr1 64472317 64472398 -217721266 - MIR SINE MIR -85 123 43 248 291 0 0 chr1 64472804 64472859 -217720805 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 193 353 167 13 chr1 64473681 64473837 -217719827 + L2 LINE L2 2796 2975 -339 371 265 121 104 chr1 64473893 64474305 -217719359 + MLT1H LTR MaLR 4 422 -127 263 368 45 0 chr1 64474664 64474819 -217718845 + MIR SINE MIR 95 256 -6 201 380 54 54 chr1 64475407 64475628 -217718036 + L2 LINE L2 3047 3267 -5 557 180 50 111 chr1 64475633 64475853 -217717811 - MIR SINE MIR -11 251 50 1146 153 16 0 chr1 64476068 64476251 -217717413 + MER5A DNA MER1_type 1 186 -3 338 283 9 19 chr1 64477268 64477374 -217716290 + L2 LINE L2 2630 2734 -580 468 329 74 62 chr1 64477586 64477911 -217715753 + L2 LINE L2 2935 3263 -9 330 327 0 0 chr1 64478465 64478575 -217715089 - MIR SINE MIR 0 262 153 227 296 14 0 chr1 64478577 64478648 -217715016 + CT-rich Low_complexity Low_complexity 4 75 0 1136 287 68 23 chr1 64478649 64479207 -217714457 - L2 LINE L2 0 3313 2729 258 281 62 21 chr1 64479236 64479332 -217714332 - L2 LINE L2 -2 3311 3212 1929 164 21 0 chr1 64479332 64479619 -217714045 - AluSg SINE Alu -17 293 1 265 331 73 20 chr1 64479667 64479818 -217713846 - L2 LINE L2 -783 2531 2373 281 345 0 0 chr1 64479824 64479908 -217713756 - MIR SINE MIR -132 130 47 232 24 49 24 chr1 64480901 64480942 -217712722 + (CAAAAA)n Simple_repeat Simple_repeat 4 45 0 297 159 58 0 chr1 64481482 64481551 -217712113 + L1PA16 LINE L1 5271 5343 -823 1659 148 4 7 chr1 64481551 64481822 -217711842 + L1PA16 LINE L1 5891 6166 0 211 256 0 0 chr1 64482093 64482136 -217711528 + L2 LINE L2 3251 3293 -20 219 114 0 0 chr1 64482743 64482778 -217710886 + (CA)n Simple_repeat Simple_repeat 2 36 0 446 339 28 17 chr1 64482835 64483015 -217710649 + MIR SINE MIR 23 204 -58 3536 144 52 41 chr1 64483034 64483748 -217709916 - L1MB2 LINE L1 -1 6170 5449 188 350 0 17 chr1 64483981 64484041 -217709623 - L2 LINE L2 -1 3312 3254 332 299 79 0 chr1 64484159 64484286 -217709378 + MIR3 SINE MIR 67 203 -5 354 361 54 43 chr1 64484526 64484894 -217708770 + L2 LINE L2 2606 2977 -337 246 326 179 59 chr1 64484946 64485354 -217708310 - L2 LINE L2 -6 3266 2810 366 176 199 96 chr1 64485903 64486039 -217707625 + L2 LINE L2 3108 3257 -56 195 100 0 0 chr1 64486714 64486744 -217706920 + (TAA)n Simple_repeat Simple_repeat 2 31 0 675 237 153 16 chr1 64486760 64486950 -217706714 - MIR SINE MIR -26 236 21 431 309 140 11 chr1 64487147 64487325 -217706339 - MIR SINE MIR -57 205 5 22 0 0 0 chr1 64487595 64487617 -217706047 + AT_rich Low_complexity Low_complexity 1 22 0 43 0 0 0 chr1 64488542 64488585 -217705079 + AT_rich Low_complexity Low_complexity 1 43 0 389 252 238 0 chr1 64488646 64488797 -217704867 + MIR SINE MIR 56 242 -20 1849 313 132 6 chr1 64489043 64489907 -217703757 + L2 LINE L2 120 1092 -2222 186 330 23 11 chr1 64490069 64490157 -217703507 - L2 LINE L2 -500 2814 2726 231 394 74 28 chr1 64490163 64490379 -217703285 + L2 LINE L2 2987 3212 -60 285 298 153 23 chr1 64490501 64490632 -217703032 - L2 LINE L2 -202 3070 2923 980 235 82 16 chr1 64491142 64491457 -217702207 - MER46C DNA MER2_type -1 337 2 216 233 0 0 chr1 64492012 64492055 -217701609 - MER5B DNA MER1_type 0 178 136 1779 153 0 17 chr1 64492514 64492801 -217700863 + AluSx SINE Alu 1 282 -30 287 159 0 0 chr1 64492801 64492839 -217700825 + AluSc SINE Alu 1 325 0 378 299 124 39 chr1 64492843 64493173 -217700491 + L2 LINE L2 2709 3076 -196 282 247 126 75 chr1 64493546 64493685 -217699979 - MIR SINE MIR -76 186 35 2266 108 47 41 chr1 64493685 64494047 -217699617 + THE1B LTR MaLR 1 364 0 282 247 126 75 chr1 64494047 64494081 -217699583 - MIR SINE MIR -227 35 4 441 305 90 67 chr1 64494174 64494397 -217699267 - L2 LINE L2 -76 3196 2969 348 59 20 0 chr1 64494407 64494458 -217699206 - MADE1 DNA Mariner 0 80 29 294 299 21 31 chr1 64495746 64495829 -217697835 - MIR SINE MIR -78 184 103 371 301 162 31 chr1 64495829 64496058 -217697606 + MIR SINE MIR 3 261 -1 439 289 57 37 chr1 64496167 64496364 -217697300 - MIR SINE MIR -26 236 37 202 274 137 0 chr1 64497221 64497272 -217696392 - L2 LINE L2 -69 3203 3146 221 282 47 47 chr1 64497294 64497379 -217696285 - L2 LINE L2 -2 3311 3227 228 263 35 0 chr1 64497514 64497571 -217696093 + L2 LINE L2 3214 3272 0 202 331 48 85 chr1 64497571 64497819 -217695845 + L2 LINE L2 2924 3162 -110 360 352 14 7 chr1 64497826 64497971 -217695693 + MIR SINE MIR 3 148 -114 300 250 0 0 chr1 64498086 64498166 -217695498 + GA-rich Low_complexity Low_complexity 2 81 0 491 291 184 0 chr1 64499099 64499278 -217694386 - MIR SINE MIR -3 259 48 1275 173 70 30 chr1 64499346 64499660 -217694004 + LTR38B LTR ERV1 1 372 -225 336 191 16 0 chr1 64499659 64499722 -217693942 - MLT1B LTR MaLR -14 376 313 * 252 0 0 0 chr1 64499827 64499855 -217693809 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 377 315 24 8 chr1 64500227 64500354 -217693310 - MIR SINE MIR -87 175 47 209 330 88 22 chr1 64500430 64500521 -217693143 + MIR SINE MIR 12 108 -154 1719 137 25 142 chr1 64500951 64501274 -217692390 - MLT1B LTR MaLR -2 388 128 2667 109 0 11 chr1 64501274 64501642 -217692022 - THE1B LTR MaLR 0 364 1 1719 137 25 142 chr1 64501642 64501755 -217691909 - MLT1B LTR MaLR -262 128 3 754 277 30 0 chr1 64501819 64502021 -217691643 - MIR SINE MIR -43 219 12 251 267 169 40 chr1 64502036 64502438 -217691226 - L2 LINE L2 -75 3197 2690 269 261 29 0 chr1 64503016 64503085 -217690579 - MIR3 SINE MIR -10 198 128 292 245 64 43 chr1 64503706 64503800 -217689864 + MIR3 SINE MIR 112 207 -1 1630 291 67 11 chr1 64504158 64504681 -217688983 - MLT1H1 LTR MaLR -3 552 1 1840 269 124 23 chr1 64504727 64505724 -217687940 + L2 LINE L2 2221 3313 0 282 297 130 14 chr1 64505975 64506113 -217687551 + MIR SINE MIR 49 202 -60 450 53 0 0 chr1 64506527 64506584 -217687080 + (CA)n Simple_repeat Simple_repeat 2 58 0 253 309 50 65 chr1 64506769 64506908 -217686756 - MIR SINE MIR -80 182 46 463 169 15 108 chr1 64507992 64508017 -217685647 - MIR SINE MIR -115 147 121 2089 101 14 10 chr1 64508017 64508314 -217685350 + AluSx SINE Alu 1 298 -14 463 169 15 108 chr1 64508314 64508418 -217685246 - MIR SINE MIR -141 121 30 307 333 34 27 chr1 64508681 64508828 -217684836 + MER5A DNA MER1_type 8 155 -34 489 262 40 7 chr1 64508835 64508984 -217684680 + MER112 DNA MER1_type 8 161 -99 252 270 164 12 chr1 64509529 64509710 -217683954 + MIR SINE MIR 48 256 -6 512 250 39 0 chr1 64510233 64510361 -217683303 - MIR SINE MIR -108 154 22 186 328 0 0 chr1 64510409 64510467 -217683197 - L3 LINE CR1 -1 1576 1519 355 316 96 0 chr1 64511114 64511250 -217682414 - MIR SINE MIR -13 249 101 257 250 47 0 chr1 64511764 64511828 -217681836 - L2 LINE L2 -6 3266 3200 643 172 41 107 chr1 64512218 64512524 -217681140 - MLT1A1 LTR MaLR 0 365 1 223 277 0 71 chr1 64513223 64513335 -217680329 - MIR SINE MIR -49 213 110 380 317 75 11 chr1 64513532 64513718 -217679946 - L2 LINE L2 -1 3312 3115 336 202 10 101 chr1 64513789 64513888 -217679776 - L2 LINE L2 0 3313 3224 * 353 266 18 0 chr1 64513872 64513981 -217679683 + L2 LINE L2 2276 2386 -928 374 351 68 26 chr1 64514345 64514702 -217678962 + L2 LINE L2 2686 3053 -219 500 335 43 5 chr1 64515074 64515259 -217678405 - MIR SINE MIR -62 200 9 210 37 0 0 chr1 64515424 64515451 -217678213 + (T)n Simple_repeat Simple_repeat 1 27 0 891 247 218 48 chr1 64516286 64516727 -217676937 - LTR33A LTR ERVL 0 523 8 294 332 53 21 chr1 64516862 64517052 -217676612 - L2 LINE L2 -224 3048 2853 404 211 86 55 chr1 64517577 64517705 -217675959 + MARNA DNA Mariner 436 567 -19 496 291 154 35 chr1 64518357 64518728 -217674936 + MLT1K LTR MaLR 172 586 -2 2552 33 0 0 chr1 64518782 64519082 -217674582 - AluY SINE Alu -11 300 1 211 268 301 0 chr1 64519097 64519220 -217674444 - MIR SINE MIR -6 256 97 738 266 141 53 chr1 64519224 64519600 -217674064 - MLT1J2 LTR MaLR -2 448 40 204 275 0 14 chr1 64519687 64519756 -217673908 + CT-rich Low_complexity Low_complexity 1 68 0 252 0 0 0 chr1 64520399 64520427 -217673237 + (A)n Simple_repeat Simple_repeat 1 28 0 267 130 0 0 chr1 64520750 64520796 -217672868 - L1MC4 LINE L1 -1339 6703 6658 207 0 0 0 chr1 64520802 64520825 -217672839 + (GA)n Simple_repeat Simple_repeat 2 24 0 459 0 0 0 chr1 64520826 64520877 -217672787 + (TG)n Simple_repeat Simple_repeat 2 52 0 665 147 0 46 chr1 64520878 64520987 -217672677 - FLAM_C SINE Alu -38 105 2 233 366 119 21 chr1 64521085 64521279 -217672385 + MIR SINE MIR 2 214 -48 1968 163 5 38 chr1 64521734 64521880 -217671784 + MLT1A1 LTR MaLR 10 159 -206 3746 40 2 2 chr1 64521880 64522327 -217671337 + L1PA5 LINE L1 5706 6152 -2 1968 163 5 38 chr1 64522327 64522548 -217671116 + MLT1A1 LTR MaLR 159 365 0 355 304 184 6 chr1 64522845 64523013 -217670651 + LTR33 LTR ERVL 3 200 -321 276 313 56 23 chr1 64523111 64523325 -217670339 + LTR33A LTR ERVL 303 523 0 449 295 122 16 chr1 64524844 64525065 -217668599 + MIR SINE MIR 18 262 0 252 0 0 0 chr1 64525985 64526013 -217667651 + (A)n Simple_repeat Simple_repeat 1 28 0 607 300 16 21 chr1 64526163 64526353 -217667311 - MIR SINE MIR -12 250 62 413 278 16 24 chr1 64526572 64526698 -217666966 + MIR SINE MIR 12 136 -126 524 236 77 46 chr1 64526794 64526973 -217666691 - MLT1G1 LTR MaLR -7 588 301 2221 199 126 62 chr1 64526993 64527863 -217665801 - LTR1B LTR ERV1 0 1020 1 715 246 114 32 chr1 64527863 64528114 -217665550 - MLT1G1 LTR MaLR -284 311 3 506 274 68 68 chr1 64528126 64528378 -217665286 - MLT1G1-int LTR MaLR -5 1366 1115 481 338 27 14 chr1 64528474 64528696 -217664968 + MIR SINE MIR 22 246 -16 2067 105 7 0 chr1 64529212 64529498 -217664166 + AluSc SINE Alu 1 288 -21 377 329 42 42 chr1 64529510 64529723 -217663941 + MIR SINE MIR 50 262 0 243 278 120 37 chr1 64529734 64529842 -217663822 + MIR SINE MIR 140 256 -6 334 244 84 23 chr1 64531613 64531740 -217661924 + MLT1F LTR MaLR 1 134 -445 258 203 13 101 chr1 64531757 64531836 -217661828 + MLT1H1 LTR MaLR 245 316 -279 373 231 35 0 chr1 64531878 64531978 -217661686 + MLT1H1 LTR MaLR 427 544 -11 428 252 140 0 chr1 64532115 64532222 -217661442 - L2 LINE L2 0 3272 3151 511 278 5 46 chr1 64532780 64532990 -217660674 - MIR3 SINE MIR -60 202 2 180 0 0 0 chr1 64533324 64533344 -217660320 + (TG)n Simple_repeat Simple_repeat 2 21 0 254 333 98 26 chr1 64533415 64533568 -217660096 - MIR3 SINE MIR -27 181 18 2270 128 17 8 chr1 64534637 64534989 -217658675 - THE1A LTR MaLR 0 355 1 11465 98 16 2 chr1 64534989 64536547 -217657117 - THE1A-int LTR MaLR 0 1580 1 2408 119 8 8 chr1 64536548 64536902 -217656762 - THE1A LTR MaLR -1 354 1 234 228 0 18 chr1 64537003 64537060 -217656604 + (TA)n Simple_repeat Simple_repeat 1 56 0 293 346 23 15 chr1 64537069 64537202 -217656462 - MIR SINE MIR -109 153 20 198 328 187 15 chr1 64537222 64537356 -217656308 - L2 LINE L2 -28 3244 3088 600 260 0 13 chr1 64537364 64537514 -217656150 - MER97b DNA MER1_type? -871 182 35 224 195 0 0 chr1 64538301 64538342 -217655322 + (CA)n Simple_repeat Simple_repeat 2 42 0 320 238 38 0 chr1 64538911 64538991 -217654673 - MIR SINE MIR -70 192 110 428 327 59 13 chr1 64539717 64539870 -217653794 + MIR SINE MIR 50 209 -53 1118 142 4 66 chr1 64539964 64540190 -217653474 - AluJb SINE Alu -12 300 89 1067 164 90 0 chr1 64541179 64541380 -217652284 - MER20 DNA MER1_type 0 219 1 429 236 121 73 chr1 64541989 64542154 -217651510 + MIR SINE MIR 79 251 -11 233 146 21 0 chr1 64542159 64542207 -217651457 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 526 351 71 8 chr1 64543189 64543428 -217650236 + MIR SINE MIR 3 256 -6 252 279 125 0 chr1 64543431 64543535 -217650129 + MIR SINE MIR 81 197 -65 534 257 158 38 chr1 64544308 64544491 -217649173 + MIR SINE MIR 49 253 -9 1389 260 95 13 chr1 64545098 64545375 -217648289 - L1MEc LINE L1 -3371 2844 2591 243 0 0 0 chr1 64545375 64545402 -217648262 + (CA)n Simple_repeat Simple_repeat 2 28 0 1389 260 95 13 chr1 64545402 64545827 -217647837 - L1MEc LINE L1 -3624 2591 2125 801 283 63 7 chr1 64545840 64546271 -217647393 - L1MEc LINE L1 -5047 1349 895 264 295 77 0 chr1 64546282 64546360 -217647304 - MIR3 SINE MIR -21 187 104 635 300 48 22 chr1 64546892 64547119 -217646545 + MIR SINE MIR 28 260 -2 629 249 43 32 chr1 64547159 64547344 -217646320 + MIR SINE MIR 10 196 -66 466 341 30 12 chr1 64547364 64547528 -217646136 - L2 LINE L2 -36 3236 3070 184 270 135 34 chr1 64547555 64547644 -217646020 - L2 LINE L2 -279 2993 2896 494 304 131 54 chr1 64547708 64547855 -217645809 - L2 LINE L2 0 3313 3179 2079 128 0 3 chr1 64547855 64548145 -217645519 + AluSx SINE Alu 5 293 -19 494 304 131 54 chr1 64548145 64548638 -217645026 - L2 LINE L2 -134 3179 2640 499 285 107 36 chr1 64548663 64549028 -217644636 - L2 LINE L2 -927 2387 1997 828 129 0 36 chr1 64549037 64549177 -217644487 - MSTB2 LTR MaLR -2 430 296 495 164 58 67 chr1 64549211 64549315 -217644349 - L2 LINE L2 -20 3293 3191 1172 169 103 7 chr1 64549376 64549649 -217644015 - MSTB2 LTR MaLR -122 335 37 236 250 105 13 chr1 64549715 64549791 -217643873 - L2 LINE L2 -1357 1957 1875 206 350 94 26 chr1 64550214 64550331 -217643333 - MIR SINE MIR -24 238 114 494 178 126 15 chr1 64550465 64550600 -217643064 + MER103 DNA DNA 17 166 0 291 320 51 10 chr1 64550694 64550813 -217642851 - MIR SINE MIR -63 145 22 270 318 75 0 chr1 64550927 64551034 -217642630 + L1ME4a LINE L1 5548 5662 -459 235 218 26 13 chr1 64551119 64551197 -217642467 + L1ME4a LINE L1 5855 5933 -188 499 178 0 17 chr1 64551895 64552013 -217641651 + CT-rich Low_complexity Low_complexity 4 119 0 503 374 30 49 chr1 64552016 64552321 -217641343 - L2 LINE L2 -5 3267 2969 385 350 80 33 chr1 64552311 64552825 -217640839 - L2 LINE L2 -2170 1144 607 * 1360 257 70 25 chr1 64552860 64553299 -217640365 + Charlie1a DNA MER1_type 7 465 -990 2041 155 14 6 chr1 64553299 64553648 -217640016 - MLT1A1 LTR MaLR 0 365 14 2811 187 105 5 chr1 64553665 64554534 -217639130 + Charlie1a DNA MER1_type 465 1451 -4 430 305 61 51 chr1 64554958 64555155 -217638509 + MIR SINE MIR 7 205 -57 506 309 61 6 chr1 64555217 64555382 -217638282 - MIR SINE MIR -81 181 8 301 325 87 0 chr1 64555798 64555924 -217637740 - L2 LINE L2 -966 2348 2212 1905 151 0 30 chr1 64556398 64556702 -217636962 + AluJo SINE Alu 1 295 -17 251 200 0 0 chr1 64556706 64556766 -217636898 - MER97c DNA MER1_type? -962 128 69 553 300 26 6 chr1 64556868 64557070 -217636594 + MIR SINE MIR 45 249 -13 4829 95 18 6 chr1 64557100 64557819 -217635845 - L1PB2 LINE L1 -2 6149 5422 194 242 0 0 chr1 64557997 64558030 -217635634 - MIR SINE MIR -164 98 66 1248 240 84 34 chr1 64558179 64558339 -217635325 - MLT1D LTR MaLR 0 505 355 486 115 13 0 chr1 64558339 64558417 -217635247 - MADE1 DNA Mariner -1 79 1 1248 240 84 34 chr1 64558417 64558731 -217634933 - MLT1D LTR MaLR -150 355 7 213 333 18 20 chr1 64559199 64559381 -217634283 - MIR SINE MIR -3 259 32 394 314 115 0 chr1 64559514 64559705 -217633959 - MIR SINE MIR -2 260 48 228 257 150 26 chr1 64559700 64559813 -217633851 + MIR SINE MIR 128 254 -8 * 245 344 86 32 chr1 64560632 64560818 -217632846 - L2 LINE L2 -212 3060 2865 195 129 0 0 chr1 64560961 64560992 -217632672 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 383 377 41 9 chr1 64561341 64561561 -217632103 - MIR SINE MIR -15 247 21 275 265 75 61 chr1 64561603 64561750 -217631914 - MIR3 SINE MIR -39 169 21 187 244 0 0 chr1 64561892 64561933 -217631731 + L2 LINE L2 3179 3219 -94 250 219 0 49 chr1 64562091 64562173 -217631491 - MLT1K LTR MaLR -112 476 399 364 308 52 52 chr1 64562209 64562420 -217631244 - MLT1K LTR MaLR -272 316 106 200 362 0 94 chr1 64562483 64562621 -217631043 - L2 LINE L2 -11 3261 3137 329 337 77 15 chr1 64562759 64562955 -217630709 - L3 LINE CR1 -21 1556 1349 399 274 8 57 chr1 64563226 64563350 -217630314 - MER5A DNA MER1_type -35 154 37 478 349 73 53 chr1 64563408 64563709 -217629955 - L2 LINE L2 -3 3269 2963 201 308 164 20 chr1 64563761 64564109 -217629555 - L2 LINE L2 -456 2858 2461 1562 176 40 72 chr1 64564959 64565362 -217628302 + MLT1B LTR MaLR 1 390 0 218 258 166 40 chr1 64565611 64565762 -217627902 + L2 LINE L2 3095 3264 -8 2239 178 5 0 chr1 64566018 64566405 -217627259 - MLT1B LTR MaLR -1 389 1 532 198 33 13 chr1 64567090 64567270 -217626394 + MER58A DNA MER1_type 6 223 -1 379 279 29 12 chr1 64567272 64567441 -217626223 - L1ME LINE L1 -364 5798 5622 225 328 0 0 chr1 64567695 64567753 -217625911 + MIR SINE MIR 84 141 -121 207 200 0 0 chr1 64567836 64567871 -217625793 + polypurine Low_complexity Low_complexity 3 37 0 257 346 0 10 chr1 64568046 64568147 -217625517 - L2 LINE L2 -181 3091 2992 607 247 108 35 chr1 64568432 64568663 -217625001 - MIR SINE MIR -13 249 2 789 250 66 5 chr1 64568802 64569014 -217624650 - MIR SINE MIR -1 261 37 1077 76 0 14 chr1 64569347 64569492 -217624172 - L1PA11 LINE L1 -3 6171 6029 260 283 42 42 chr1 64569964 64570084 -217623580 + MIR SINE MIR 30 149 -59 557 284 77 14 chr1 64570363 64570585 -217623079 - MIR SINE MIR -4 258 23 306 250 115 0 chr1 64570820 64570916 -217622748 - MLT1I LTR MaLR 0 409 303 238 210 81 0 chr1 64570941 64571003 -217622661 - MLT1J1 LTR MaLR -137 309 243 216 0 0 0 chr1 64571295 64571319 -217622345 + (TG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 64572138 64572161 -217621503 + AT_rich Low_complexity Low_complexity 1 23 0 408 339 23 62 chr1 64572200 64572460 -217621204 - L2 LINE L2 -210 3062 2813 330 333 81 0 chr1 64572880 64572991 -217620673 + L2 LINE L2 3147 3266 -6 241 243 74 95 chr1 64573119 64573267 -217620397 - L2 LINE L2 -638 2676 2532 549 199 0 0 chr1 64573308 64573479 -217620185 + (TA)n Simple_repeat Simple_repeat 1 171 0 319 272 32 48 chr1 64573482 64573607 -217620057 + L1MC4 LINE L1 6609 6731 -1311 2206 101 34 0 chr1 64573622 64573919 -217619745 - AluSc SINE Alu 0 309 3 322 269 219 19 chr1 64574306 64574466 -217619198 - MIR SINE MIR -36 226 35 285 326 166 23 chr1 64574575 64574876 -217618788 + L2 LINE L2 2409 2752 -562 965 151 38 16 chr1 64574933 64575118 -217618546 + MER5A DNA MER1_type 1 189 0 2782 79 11 0 chr1 64575288 64575712 -217617952 - L1PA7 LINE L1 -513 5641 5214 3822 70 10 0 chr1 64575712 64576210 -217617454 + L1PA7 LINE L1 5648 6152 -2 242 296 61 31 chr1 64576404 64576502 -217617162 - L2 LINE L2 -4 3268 3168 337 305 51 30 chr1 64576510 64576746 -217616918 - MER112 DNA MER1_type -6 254 14 246 312 134 32 chr1 64576821 64576978 -217616686 - MIR SINE MIR 0 262 90 245 122 0 0 chr1 64577463 64577504 -217616160 - MADE1 DNA Mariner 0 80 40 352 287 16 0 chr1 64577531 64577653 -217616011 + CT-rich Low_complexity Low_complexity 2 125 0 257 341 36 14 chr1 64578231 64578369 -217615295 + L2 LINE L2 2913 3053 -219 264 352 42 0 chr1 64578454 64578525 -217615139 - L2 LINE L2 -77 3195 3122 383 264 153 0 chr1 64578535 64578679 -217614985 + L2 LINE L2 2458 2623 -691 461 343 201 6 chr1 64578735 64579094 -217614570 + L2 LINE L2 2881 3309 -4 780 316 97 16 chr1 64579159 64579736 -217613928 - L2 LINE L2 -168 3104 2481 221 375 50 8 chr1 64579976 64580096 -217613568 + L2 LINE L2 3179 3303 -10 198 293 127 29 chr1 64580133 64580338 -217613326 + L2 LINE L2 2211 2435 -879 293 308 150 8 chr1 64580365 64580485 -217613179 - MIR SINE MIR -17 245 109 257 324 29 29 chr1 64580892 64580997 -217612667 + L3 LINE CR1 1425 1529 -48 297 317 40 0 chr1 64581218 64581319 -217612345 + MIR SINE MIR 107 211 -51 419 311 20 60 chr1 64581439 64581590 -217612074 + MIR SINE MIR 10 154 -108 536 242 132 47 chr1 64581689 64581879 -217611785 + MIR SINE MIR 51 256 -6 809 278 35 4 chr1 64581888 64582115 -217611549 + MIR SINE MIR 29 262 0 228 274 0 0 chr1 64582192 64582243 -217611421 + MIR SINE MIR 123 173 -89 424 288 53 22 chr1 64583080 64583255 -217610409 - MIR SINE MIR -61 147 2 682 282 91 29 chr1 64583320 64583561 -217610103 - MIR SINE MIR -6 256 1 691 240 74 9 chr1 64583584 64583728 -217609936 - MER112 DNA MER1_type -11 249 83 1733 173 3 36 chr1 64583728 64584034 -217609630 + AluJb SINE Alu 1 296 -16 691 240 74 9 chr1 64584034 64584118 -217609546 - MER112 DNA MER1_type -177 83 6 1671 189 35 123 chr1 64584217 64584787 -217608877 - MLT2B1 LTR ERVL 0 520 1 548 323 35 13 chr1 64584903 64585135 -217608529 - MIR SINE MIR -3 259 23 277 291 45 15 chr1 64585496 64585630 -217608034 + MER117 DNA MER1_type 55 192 -5 225 274 255 0 chr1 64585883 64585985 -217607679 - L2 LINE L2 0 3272 3145 341 284 43 91 chr1 64586462 64586716 -217606948 + L2 LINE L2 2851 3092 -180 23 0 0 0 chr1 64587043 64587066 -217606598 + AT_rich Low_complexity Low_complexity 1 23 0 396 277 68 78 chr1 64587398 64587604 -217606060 + MIR SINE MIR 2 205 -57 846 243 51 36 chr1 64587815 64588075 -217605589 - MIR SINE MIR 0 262 2 343 255 145 78 chr1 64588406 64588627 -217605037 - MIR SINE MIR 0 262 11 183 282 164 42 chr1 64589833 64590046 -217603618 + L2 LINE L2 2986 3224 -48 1208 339 109 31 chr1 64590109 64590566 -217603098 - L3 LINE CR1 -2 1575 1155 1679 189 52 3 chr1 64590566 64590953 -217602711 - L1MB1 LINE L1 -1 6167 5762 1208 339 109 31 chr1 64590953 64591218 -217602446 - L3 LINE CR1 -422 1155 912 2638 99 11 3 chr1 64591218 64591590 -217602074 + THE1C LTR MaLR 1 375 0 1208 339 109 31 chr1 64591590 64591812 -217601852 - L3 LINE CR1 -665 912 556 371 283 54 39 chr1 64591802 64591973 -217601691 + MER5B DNA MER1_type 9 171 -7 * 425 355 32 0 chr1 64592677 64592832 -217600832 + MIR3 SINE MIR 45 204 -4 446 323 82 0 chr1 64593306 64593464 -217600200 - MIR3 SINE MIR -4 204 34 313 280 70 63 chr1 64593527 64593670 -217599994 - L2 LINE L2 -5 3267 3124 229 232 147 42 chr1 64593933 64594028 -217599636 + MIR SINE MIR 38 142 -120 190 224 0 145 chr1 64595652 64595728 -217597936 + L2 LINE L2 3238 3302 -11 264 59 0 0 chr1 64595731 64595765 -217597899 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 897 226 14 47 chr1 64596515 64596727 -217596937 - MER58C DNA MER1_type -1 214 10 245 320 42 16 chr1 64596776 64596915 -217596749 - MIR3 SINE MIR -59 149 15 1079 177 4 60 chr1 64596939 64597171 -217596493 + MER20 DNA MER1_type 1 219 0 313 238 12 0 chr1 64597785 64597869 -217595795 + MIR SINE MIR 64 148 -114 189 106 43 21 chr1 64598296 64598343 -217595321 + (TTATG)n Simple_repeat Simple_repeat 5 52 0 195 315 124 0 chr1 64598382 64598471 -217595193 + MIR3 SINE MIR 101 200 -8 378 222 22 0 chr1 64598956 64599046 -217594618 + MIR3 SINE MIR 63 154 -54 241 284 138 9 chr1 64599234 64599343 -217594321 - MIR SINE MIR -69 193 71 478 269 106 23 chr1 64599347 64599568 -217594096 - MIR SINE MIR -11 251 8 1101 172 38 19 chr1 64599570 64599779 -217593885 + MER20 DNA MER1_type 7 219 0 238 379 34 0 chr1 64600226 64600403 -217593261 + MIR SINE MIR 73 255 -7 1955 219 47 14 chr1 64600958 64601402 -217592262 - MLT1C LTR MaLR -3 464 6 258 337 51 10 chr1 64601563 64601661 -217592003 + MIR SINE MIR 36 137 -71 398 294 219 16 chr1 64602054 64602479 -217591185 + L3 LINE CR1 1064 1574 -3 2036 138 0 41 chr1 64602731 64603049 -217590615 - AluSx SINE Alu -7 305 1 246 203 29 0 chr1 64603093 64603162 -217590502 + MIR SINE MIR 133 203 -59 215 280 10 90 chr1 64603521 64603621 -217590043 - MER91 DNA MER1_type -58 138 47 639 260 45 20 chr1 64603663 64603863 -217589801 - MIR SINE MIR -17 245 41 209 111 28 0 chr1 64604594 64604630 -217589034 - MIR3 SINE MIR -22 186 150 1443 138 0 17 chr1 64605349 64605580 -217588084 + L1PA12 LINE L1 1670 1896 -5685 2246 139 22 6 chr1 64606441 64606800 -217586864 - MLT1A1 LTR MaLR 0 365 1 253 352 0 28 chr1 64606867 64606975 -217586689 + L2 LINE L2 3168 3272 0 182 340 0 0 chr1 64607175 64607228 -217586436 + L2 LINE L2 3121 3173 -99 729 169 11 82 chr1 64608003 64608129 -217585535 + MER5B DNA MER1_type 1 112 -66 2117 118 36 13 chr1 64608129 64608434 -217585230 - AluSx SINE Alu 0 312 1 729 169 11 82 chr1 64608434 64608490 -217585174 + MER5B DNA MER1_type 112 170 -8 188 306 71 10 chr1 64609553 64609651 -217584013 - L2 LINE L2 -38 3275 3172 909 261 126 39 chr1 64610183 64610544 -217583120 + L2 LINE L2 2797 3216 -97 1942 160 22 16 chr1 64610544 64610907 -217582757 + MLT1A1 LTR MaLR 1 365 0 909 261 126 39 chr1 64610907 64611014 -217582650 + L2 LINE L2 3216 3312 -1 2192 107 7 0 chr1 64611022 64611312 -217582352 + AluSx SINE Alu 2 293 -19 268 318 64 86 chr1 64611326 64611700 -217581964 + L2 LINE L2 2896 3261 -11 353 200 24 12 chr1 64612690 64612775 -217580889 - MIR SINE MIR -62 146 61 421 259 97 27 chr1 64612968 64613153 -217580511 + MIR SINE MIR 64 261 -1 683 278 79 8 chr1 64613383 64613624 -217580040 - MIR SINE MIR -4 258 1 318 247 133 7 chr1 64614375 64614525 -217579139 - L2 LINE L2 0 3313 3145 232 174 0 0 chr1 64615208 64615254 -217578410 + (TTA)n Simple_repeat Simple_repeat 2 47 0 408 40 0 0 chr1 64616966 64617016 -217576648 + (CA)n Simple_repeat Simple_repeat 1 50 0 459 287 13 19 chr1 64617775 64617932 -217575732 + L2 LINE L2 2909 3064 -208 240 111 0 0 chr1 64618163 64618199 -217575465 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 382 283 71 0 chr1 64618426 64618539 -217575125 + MIR3 SINE MIR 62 182 -26 747 274 5 19 chr1 64618666 64618878 -217574786 + MIR SINE MIR 13 221 -41 660 298 43 0 chr1 64618887 64619095 -217574569 - MIR SINE MIR 0 262 46 216 283 0 19 chr1 64619103 64619156 -217574508 + L2 LINE L2 3210 3261 -11 272 337 93 43 chr1 64619315 64619615 -217574049 - L2 LINE L2 0 3272 2958 326 349 23 0 chr1 64620285 64620414 -217573250 - L3 LINE CR1 -96 1481 1350 245 333 150 0 chr1 64621755 64621875 -217571789 - L2 LINE L2 -10 3262 3125 200 339 0 0 chr1 64623146 64623208 -217570456 - MIR SINE MIR -152 110 49 262 276 29 9 chr1 64623384 64623489 -217570175 + T-rich Low_complexity Low_complexity 1 107 0 597 271 20 30 chr1 64623649 64623848 -217569816 - MIR SINE MIR 0 262 66 775 299 46 55 chr1 64623861 64624493 -217569171 - L1ME4a LINE L1 -118 6003 5378 23 0 0 0 chr1 64624582 64624605 -217569059 + AT_rich Low_complexity Low_complexity 1 23 0 2265 111 7 0 chr1 64624655 64624961 -217568703 - AluSx SINE Alu -1 311 4 1045 238 65 44 chr1 64625139 64625525 -217568139 + MLT1I LTR MaLR 8 401 -8 877 180 5 16 chr1 64625684 64625873 -217567791 - MER53 DNA DNA 0 189 3 320 290 47 0 chr1 64625940 64626047 -217567617 - HAL1b LINE L1 -850 498 387 194 309 24 95 chr1 64627893 64628061 -217565603 + MIR SINE MIR 106 261 -1 44 46 0 0 chr1 64628276 64628341 -217565323 + AT_rich Low_complexity Low_complexity 1 65 0 1723 180 10 17 chr1 64628357 64628657 -217565007 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr1 64628757 64628786 -217564878 + AT_rich Low_complexity Low_complexity 1 29 0 918 114 38 6 chr1 64629357 64629677 -217563987 + (TAGA)n Simple_repeat Simple_repeat 1 330 0 314 343 15 15 chr1 64629725 64629859 -217563805 - MIR SINE MIR -109 153 20 401 228 128 7 chr1 64630104 64630253 -217563411 - MIR SINE MIR -2 260 94 2185 111 3 10 chr1 64630491 64630788 -217562876 + AluSx SINE Alu 1 295 -17 1492 169 79 17 chr1 64630860 64630980 -217562684 + AluJb SINE Alu 2 113 -199 207 0 0 0 chr1 64630980 64631003 -217562661 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1492 169 79 17 chr1 64631003 64631172 -217562492 + AluJb SINE Alu 113 309 -3 1247 264 99 10 chr1 64631205 64631607 -217562057 + L1ME3A LINE L1 5527 5964 -206 470 229 21 0 chr1 64633131 64633227 -217560437 + MER5A DNA MER1_type 12 109 -80 784 335 24 28 chr1 64633328 64633833 -217559831 - L2 LINE L2 -776 2538 2036 943 230 42 5 chr1 64634564 64634777 -217558887 + MER58A DNA MER1_type 1 221 -3 278 286 70 113 chr1 64635133 64635531 -217558133 + L2 LINE L2 2597 2977 -337 2216 113 0 7 chr1 64635721 64636048 -217557616 + AluY SINE Alu 1 311 0 1901 198 15 23 chr1 64637192 64637591 -217556073 + MSTD LTR MaLR 1 396 0 277 360 32 8 chr1 64637886 64638011 -217555653 - L2 LINE L2 -12 3260 3133 598 219 84 11 chr1 64638740 64638918 -217554746 + MIR SINE MIR 65 255 -7 995 171 7 0 chr1 64639163 64639315 -217554349 - AluJb SINE Alu -25 287 135 461 287 7 7 chr1 64639328 64639471 -217554193 - MIR3 SINE MIR -17 191 49 389 313 152 5 chr1 64639659 64639870 -217553794 - MIR SINE MIR 0 262 21 217 200 120 27 chr1 64639951 64640026 -217553638 - MIR SINE MIR -72 190 109 729 242 16 77 chr1 64640720 64640968 -217552696 + MIR SINE MIR 7 239 -23 309 293 93 0 chr1 64641231 64641381 -217552283 - L3 LINE CR1 -145 1432 1269 488 296 50 45 chr1 64641438 64641658 -217552006 - MIR SINE MIR -22 240 20 279 306 58 25 chr1 64641698 64641819 -217551845 - MIR SINE MIR -65 197 73 446 244 49 0 chr1 64641860 64641983 -217551681 + MIR SINE MIR 43 171 -91 469 188 158 0 chr1 64643216 64643349 -217550315 + MIR SINE MIR 99 252 -10 222 217 0 0 chr1 64644065 64644134 -217549530 + CT-rich Low_complexity Low_complexity 3 71 0 337 316 116 7 chr1 64644363 64644518 -217549146 - MIR SINE MIR -71 191 20 279 301 154 0 chr1 64644571 64644694 -217548970 + MIR SINE MIR 65 206 -56 236 230 81 11 chr1 64645166 64645253 -217548411 + L2 LINE L2 3162 3254 -59 445 259 151 18 chr1 64645429 64645595 -217548069 + MIR SINE MIR 2 189 -73 281 287 45 105 chr1 64645810 64646318 -217547346 - L2 LINE L2 -96 3176 2697 292 338 72 72 chr1 64647294 64647643 -217546021 - L2 LINE L2 -11 3261 2913 287 116 0 0 chr1 64647973 64648016 -217545648 - MIR SINE MIR -5 257 215 184 188 12 12 chr1 64648392 64648472 -217545192 + (TTAA)n Simple_repeat Simple_repeat 3 82 0 196 343 65 19 chr1 64648476 64648584 -217545080 - L2 LINE L2 -1 3312 3200 213 306 128 55 chr1 64648645 64649043 -217544621 - L2 LINE L2 -653 2661 2235 196 276 14 17 chr1 64649194 64649267 -217544397 + MIR SINE MIR 92 168 -40 233 320 41 10 chr1 64649492 64649589 -217544075 - MIR SINE MIR -72 136 37 253 244 67 0 chr1 64650670 64650760 -217542904 - L1ME4a LINE L1 -59 6062 5967 422 266 75 58 chr1 64650847 64651173 -217542491 - L1MC4a LINE L1 -128 5993 5661 314 317 116 25 chr1 64651713 64651912 -217541752 + MIR SINE MIR 21 237 -25 361 309 29 81 chr1 64652308 64652615 -217541049 + L2 LINE L2 2687 2977 -337 189 0 0 0 chr1 64653450 64653471 -217540193 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 234 0 0 0 chr1 64653470 64653496 -217540168 + (TG)n Simple_repeat Simple_repeat 2 27 0 195 328 0 0 chr1 64654289 64654350 -217539314 + MIR SINE MIR 14 74 -188 389 146 0 0 chr1 64654352 64654407 -217539257 + MADE1 DNA Mariner 2 56 -24 329 223 324 0 chr1 64654510 64654649 -217539015 + MIR SINE MIR 79 262 0 274 337 0 12 chr1 64654656 64654739 -217538925 + MIR SINE MIR 21 102 -160 752 258 6 0 chr1 64654752 64654919 -217538745 + MIR SINE MIR 28 195 -67 241 78 0 39 chr1 64654920 64654971 -217538693 + (TTA)n Simple_repeat Simple_repeat 1 49 0 182 269 75 54 chr1 64655076 64655169 -217538495 + MIR SINE MIR 109 203 -59 2083 48 0 8 chr1 64655211 64655494 -217538170 + AluY SINE Alu 35 315 0 369 224 9 56 chr1 64655823 64655930 -217537734 + MIR SINE MIR 89 190 -72 262 331 136 35 chr1 64656392 64656561 -217537103 + L2 LINE L2 2917 3102 -170 281 205 108 0 chr1 64657107 64657190 -217536474 - MLT1H-int LTR MaLR -1642 93 2 757 261 92 77 chr1 64657191 64657712 -217535952 - MLT1H LTR MaLR 0 549 21 513 273 55 63 chr1 64657727 64657998 -217535666 + MLT1I LTR MaLR 141 409 0 740 334 66 35 chr1 64658334 64659029 -217534635 - L2 LINE L2 -9 3263 2545 1245 286 48 19 chr1 64659783 64660160 -217533504 + MLT1J1 LTR MaLR 59 446 0 2028 146 134 0 chr1 64660552 64660873 -217532791 + THE1B LTR MaLR 1 364 0 1989 152 0 10 chr1 64661613 64661915 -217531749 - AluSx SINE Alu -13 299 1 510 239 67 22 chr1 64661950 64662084 -217531580 - L2 LINE L2 0 3313 3174 606 228 117 125 chr1 64662292 64662838 -217530826 - MLT1G LTR MaLR -1 589 1 1431 202 89 0 chr1 64663092 64663374 -217530290 + AluJo SINE Alu 1 307 -5 280 283 30 20 chr1 64663705 64663804 -217529860 + MIR SINE MIR 17 116 -146 2876 102 3 0 chr1 64664160 64664523 -217529141 + THE1B LTR MaLR 1 364 0 466 300 130 14 chr1 64664813 64665036 -217528628 + MIR SINE MIR 13 261 -1 2156 94 42 3 chr1 64665073 64665382 -217528282 - L1PB2 LINE L1 -4 6147 5827 601 281 97 0 chr1 64666304 64666489 -217527175 + MIR SINE MIR 48 250 -12 181 296 42 0 chr1 64667496 64667567 -217526097 - MIR SINE MIR -50 212 139 221 188 208 104 chr1 64667607 64667703 -217525961 - MIR SINE MIR -108 154 49 * 458 339 84 9 chr1 64667665 64667892 -217525772 + MIR SINE MIR 18 261 -1 245 247 86 24 chr1 64668377 64668460 -217525204 + MIR SINE MIR 63 151 -57 231 250 0 0 chr1 64668814 64668858 -217524806 + C-rich Low_complexity Low_complexity 2 45 0 180 256 36 117 chr1 64668917 64669054 -217524610 + L2 LINE L2 2918 3043 -229 2529 128 32 8 chr1 64669058 64669458 -217524206 - MSTB LTR MaLR -2 424 15 326 282 67 67 chr1 64669777 64669972 -217523692 - MIR3 SINE MIR -3 205 11 301 333 57 9 chr1 64669999 64670104 -217523560 - L2 LINE L2 -29 3243 3134 274 287 165 12 chr1 64670975 64671139 -217522525 + MIR SINE MIR 3 191 -71 1026 122 0 0 chr1 64671200 64671380 -217522284 + (TA)n Simple_repeat Simple_repeat 1 180 0 430 279 174 0 chr1 64672858 64673030 -217520634 - MIR SINE MIR -5 257 56 22 0 0 0 chr1 64673166 64673188 -217520476 + AT_rich Low_complexity Low_complexity 1 22 0 2048 108 57 7 chr1 64673503 64673800 -217519864 - AluSq SINE Alu -1 312 1 727 308 50 4 chr1 64674516 64674756 -217518908 + MIR SINE MIR 12 262 0 186 43 0 0 chr1 64675438 64675461 -217518203 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2013 138 7 0 chr1 64675628 64675919 -217517745 - AluSx SINE Alu -19 293 1 324 213 148 9 chr1 64676352 64676460 -217517204 - L1MC/D LINE L1 -2284 5524 5402 315 289 211 0 chr1 64676640 64676730 -217516934 + L2 LINE L2 3203 3311 -2 375 315 185 23 chr1 64676996 64677472 -217516192 - L1MC/D LINE L1 -786 5360 4808 593 290 94 43 chr1 64677837 64678347 -217515317 - L1MC/D LINE L1 -1715 4431 3896 306 312 110 68 chr1 64678567 64678661 -217515003 + L2 LINE L2 2917 3006 -266 1812 31 9 36 chr1 64678661 64678886 -217514778 - AluY SINE Alu -3 308 90 306 312 110 68 chr1 64678886 64679128 -217514536 + L2 LINE L2 3006 3267 -5 228 209 0 0 chr1 64679354 64679397 -217514267 - MIR SINE MIR 0 262 220 197 308 52 12 chr1 64679432 64679526 -217514138 - MIR SINE MIR -66 142 50 213 324 128 20 chr1 64680339 64680487 -217513177 + MIR SINE MIR 22 185 -77 604 263 163 7 chr1 64681233 64681444 -217512220 + MIR SINE MIR 37 262 0 1728 189 0 10 chr1 64681471 64681777 -217511887 + AluJo SINE Alu 9 311 -1 362 325 49 12 chr1 64681778 64681941 -217511723 - L3b LINE CR1 -147 1436 1268 228 67 0 0 chr1 64682073 64682103 -217511561 + (CA)n Simple_repeat Simple_repeat 1 30 0 413 294 81 0 chr1 64686313 64686449 -217507215 + MIR SINE MIR 79 225 -37 660 248 81 19 chr1 64687073 64687283 -217506381 - MIR SINE MIR -20 242 20 209 275 107 14 chr1 64687373 64687489 -217506175 - MIR SINE MIR -50 212 86 311 327 12 48 chr1 64687542 64687710 -217505954 - MIR3 SINE MIR -28 180 19 181 309 86 25 chr1 64687793 64687874 -217505790 - L3 LINE CR1 -220 1357 1272 2434 79 0 3 chr1 64687950 64688254 -217505410 - AluY SINE Alu -8 303 1 192 222 44 0 chr1 64688280 64688325 -217505339 + L2 LINE L2 3267 3313 0 187 383 12 0 chr1 64688328 64688409 -217505255 - L3 LINE CR1 -400 1177 1096 197 321 0 0 chr1 64689035 64689091 -217504573 - MIR3 SINE MIR -2 206 151 220 241 35 23 chr1 64689238 64689325 -217504339 + L2 LINE L2 2718 2805 -509 309 309 141 32 chr1 64689435 64689684 -217503980 + L2 LINE L2 2686 2961 -353 2074 208 125 0 chr1 64690193 64690703 -217502961 - MER90 LTR ERV1 0 614 1 400 281 156 6 chr1 64690711 64690871 -217502793 + MIR SINE MIR 71 254 -8 228 345 35 0 chr1 64691309 64691396 -217502268 - MIR SINE MIR -114 148 59 1279 133 42 21 chr1 64691428 64691668 -217501996 - L1MB4 LINE L1 -1 6179 5935 351 245 10 10 chr1 64691670 64691688 -217501976 - L1MA10 LINE L1 -2 6332 6315 837 225 103 5 chr1 64691688 64691901 -217501763 - L1ME2 LINE L1 -11 6153 5920 424 235 106 35 chr1 64691954 64692124 -217501540 - MIR3 SINE MIR -11 197 16 369 276 47 15 chr1 64692727 64692876 -217500788 + MIR SINE MIR 74 228 -34 358 254 169 35 chr1 64693476 64693618 -217500046 - MIR3 SINE MIR -11 197 37 372 333 67 0 chr1 64693649 64693799 -217499865 + MIR SINE MIR 46 205 -57 738 222 46 0 chr1 64693895 64694048 -217499616 + MER58A DNA MER1_type 28 187 -37 632 359 53 3 chr1 64694127 64694506 -217499158 + L2 LINE L2 2236 2633 -681 203 265 20 0 chr1 64694889 64694938 -217498726 + CT-rich Low_complexity Low_complexity 3 52 0 186 103 0 0 chr1 64694939 64694968 -217498696 + (TC)n Simple_repeat Simple_repeat 2 30 0 348 83 0 0 chr1 64696321 64696369 -217497295 + (ATG)n Simple_repeat Simple_repeat 3 50 0 788 310 4 4 chr1 64696372 64696601 -217497063 - MIR SINE MIR -5 257 29 328 272 96 22 chr1 64696699 64696835 -217496829 - MIR SINE MIR -111 151 6 21 0 0 0 chr1 64698247 64698268 -217495396 + AT_rich Low_complexity Low_complexity 1 21 0 826 168 138 6 chr1 64699407 64699574 -217494090 + MER5A DNA MER1_type 1 189 0 388 265 200 6 chr1 64699619 64699789 -217493875 - MIR SINE MIR -15 247 45 226 191 0 0 chr1 64699782 64699824 -217493840 + L2 LINE L2 3267 3308 -5 * 336 281 29 61 chr1 64700214 64700431 -217493233 - MIR SINE MIR -31 231 16 969 182 49 20 chr1 64700877 64701080 -217492584 + MER20B DNA MER1_type 1 209 -10 227 299 56 28 chr1 64701132 64701239 -217492425 - L2 LINE L2 -5 3267 3158 399 322 26 0 chr1 64701788 64701940 -217491724 - MIR3 SINE MIR -7 201 46 336 288 127 8 chr1 64702051 64702169 -217491495 - MIR SINE MIR -60 148 17 405 270 36 0 chr1 64703418 64703529 -217490135 - L2 LINE L2 -13 3300 3186 256 266 16 0 chr1 64703517 64703581 -217490083 - L2 LINE L2 -243 3070 3006 * 401 328 35 23 chr1 64703806 64704062 -217489602 + MIR SINE MIR 2 260 -2 1700 181 3 35 chr1 64704210 64704524 -217489140 + AluJo SINE Alu 1 304 -8 434 306 120 14 chr1 64704720 64704929 -217488735 - MIR SINE MIR -12 250 20 1816 227 53 34 chr1 64705796 64706515 -217487149 + MER20B DNA MER1_type 1 781 -2 340 199 92 84 chr1 64707937 64708068 -217485596 - L2 LINE L2 0 3313 3182 501 241 51 79 chr1 64708207 64708423 -217485241 - MIR SINE MIR -5 257 48 429 305 17 34 chr1 64708665 64708842 -217484822 - MIR SINE MIR -61 201 28 262 271 100 50 chr1 64709086 64709226 -217484438 - MIR3 SINE MIR -33 175 29 2259 112 80 6 chr1 64709272 64709611 -217484053 + THE1B LTR MaLR 1 364 0 233 309 48 0 chr1 64709637 64709721 -217483943 - MIR3 SINE MIR -9 199 112 355 319 93 16 chr1 64709894 64710076 -217483588 + L2 LINE L2 3113 3308 -5 477 204 0 10 chr1 64712589 64712692 -217480972 + MIR3 SINE MIR 82 183 -25 249 312 13 0 chr1 64713341 64713418 -217480246 + GA-rich Low_complexity Low_complexity 1 78 0 243 295 98 49 chr1 64713649 64713832 -217479832 - MIR SINE MIR -58 204 13 215 219 47 16 chr1 64714409 64714473 -217479191 - MIR SINE MIR -90 172 107 2172 112 100 6 chr1 64715125 64715465 -217478199 + MER83B LTR ERV1 1 372 -6 313 266 53 134 chr1 64715805 64715995 -217477669 - L2 LINE L2 -32 3240 3036 2807 73 3 0 chr1 64715995 64716349 -217477315 + THE1A LTR MaLR 1 355 0 11872 97 6 1 chr1 64716352 64717922 -217475742 + THE1A-int LTR MaLR 3 1580 0 2385 106 41 0 chr1 64717922 64718263 -217475401 + THE1A LTR MaLR 1 355 0 313 266 53 134 chr1 64718263 64718409 -217475255 - L2 LINE L2 -236 3036 2927 244 314 67 0 chr1 64719435 64719540 -217474124 - MIR SINE MIR -106 156 45 797 204 43 0 chr1 64720497 64720659 -217473005 - MER5B DNA MER1_type 0 178 10 219 337 11 0 chr1 64720855 64720950 -217472714 + (CTATA)n Simple_repeat Simple_repeat 4 99 0 201 147 0 0 chr1 64721083 64721117 -217472547 + (CA)n Simple_repeat Simple_repeat 2 35 0 247 246 7 106 chr1 64721863 64721911 -217471753 + L2 LINE L2 2929 2980 -292 2401 64 7 3 chr1 64721911 64722207 -217471457 + AluSg SINE Alu 1 297 -13 247 246 7 106 chr1 64722207 64722300 -217471364 + L2 LINE L2 2980 3056 -216 343 302 111 17 chr1 64723531 64723703 -217469961 + MIR SINE MIR 75 262 0 1700 131 8 0 chr1 64723745 64723990 -217469674 - AluSg/x SINE Alu -1 311 65 635 239 54 12 chr1 64724926 64725093 -217468571 - MER5B DNA MER1_type -2 176 3 288 314 12 0 chr1 64725182 64725268 -217468396 - L2 LINE L2 0 3272 3186 1006 174 56 0 chr1 64725789 64725985 -217467679 + MER3 DNA MER1_type 1 207 -2 22 0 0 0 chr1 64725993 64726015 -217467649 + AT_rich Low_complexity Low_complexity 1 22 0 182 305 53 23 chr1 64727101 64727232 -217466432 + MIR SINE MIR 117 251 -11 189 279 0 0 chr1 64729189 64729232 -217464432 - L2 LINE L2 -12 3260 3218 193 275 84 46 chr1 64729488 64729619 -217464045 + MIR SINE MIR 124 259 -3 223 259 113 81 chr1 64729714 64729899 -217463765 - MIR3 SINE MIR -1 207 17 300 120 0 0 chr1 64730739 64730789 -217462875 + (CA)n Simple_repeat Simple_repeat 1 50 0 572 275 227 20 chr1 64731151 64731476 -217462188 + L2 LINE L2 2327 2583 -730 2366 97 0 0 chr1 64731476 64731774 -217461890 + AluSx SINE Alu 1 298 -14 572 275 227 20 chr1 64731774 64732241 -217461423 + L2 LINE L2 2583 3286 -27 825 276 31 4 chr1 64732819 64733044 -217460620 - MIR SINE MIR -30 232 2 2338 125 0 0 chr1 64733327 64733638 -217460026 + AluSx SINE Alu 1 311 -1 186 250 39 0 chr1 64733914 64733966 -217459698 + MIR SINE MIR 103 156 -106 224 232 0 43 chr1 64734157 64734226 -217459438 + MIR SINE MIR 191 256 -6 640 171 47 31 chr1 64734866 64734995 -217458669 - MER94 DNA DNA 0 134 4 1248 199 41 97 chr1 64735221 64735634 -217458030 + MLT1B LTR MaLR 1 390 0 900 242 8 62 chr1 64735878 64736138 -217457526 - MIR SINE MIR 0 262 17 260 303 98 0 chr1 64736198 64736320 -217457344 - MIR SINE MIR -57 205 72 2315 61 0 7 chr1 64737112 64737392 -217456272 + AluY SINE Alu 34 311 0 1124 266 61 65 chr1 64737623 64738146 -217455518 + LTR33A LTR ERVL 3 523 0 247 357 80 69 chr1 64738412 64738776 -217454888 + L2 LINE L2 2905 3272 0 256 297 103 65 chr1 64738778 64739010 -217454654 + L3 LINE CR1 1326 1566 -11 313 262 56 19 chr1 64739908 64740015 -217453649 + MIR SINE MIR 29 139 -123 367 285 215 26 chr1 64740648 64740918 -217452746 - L3 LINE CR1 -46 1531 1211 223 262 16 0 chr1 64741023 64741084 -217452580 - MIR SINE MIR -63 145 84 1896 146 0 21 chr1 64741177 64741465 -217452199 - AluJo SINE Alu -30 282 1 240 35 0 0 chr1 64741570 64741599 -217452065 + (TA)n Simple_repeat Simple_repeat 2 30 0 2408 91 3 0 chr1 64741599 64741896 -217451768 - AluSx SINE Alu -14 298 1 2508 72 0 3 chr1 64742380 64742687 -217450977 - AluY SINE Alu -5 306 1 235 308 34 17 chr1 64742875 64742992 -217450672 + L2 LINE L2 2953 3071 -201 559 300 27 34 chr1 64743832 64744095 -217449569 - MIR SINE MIR 0 262 2 1741 179 3 22 chr1 64744126 64744444 -217449220 + AluJo SINE Alu 1 312 0 2180 135 3 0 chr1 64744492 64744789 -217448875 + AluSx SINE Alu 1 298 -14 34 24 0 0 chr1 64745245 64745286 -217448378 + AT_rich Low_complexity Low_complexity 1 41 0 2524 66 0 3 chr1 64745515 64745817 -217447847 - AluY SINE Alu -10 301 1 190 185 46 0 chr1 64746304 64746369 -217447295 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 294 328 94 10 chr1 64746511 64746703 -217446961 - MIR SINE MIR -10 252 45 298 315 51 79 chr1 64746744 64746960 -217446704 - L2 LINE L2 -35 3237 3028 202 343 118 0 chr1 64747073 64747251 -217446413 - MIR SINE MIR -43 219 21 2258 78 0 4 chr1 64748036 64748360 -217445304 - AluSg SINE Alu 0 323 1 943 326 73 10 chr1 64749275 64749757 -217443907 - L3 LINE CR1 -3 1574 1063 251 279 10 4 chr1 64751863 64751967 -217441697 + L2 LINE L2 3116 3262 -10 378 238 67 55 chr1 64752087 64752251 -217441413 - MIR SINE MIR -49 213 48 447 228 21 62 chr1 64752285 64752430 -217441234 - MIR SINE MIR 0 262 124 243 337 0 0 chr1 64753077 64753166 -217440498 + L2 LINE L2 2996 3084 -188 310 351 13 26 chr1 64753187 64753338 -217440326 - L2 LINE L2 0 3272 3124 215 245 106 32 chr1 64753631 64753725 -217439939 + MIR SINE MIR 36 136 -72 222 308 37 19 chr1 64754670 64754777 -217438887 - MIR SINE MIR -70 192 84 520 237 65 12 chr1 64755290 64755459 -217438205 + MIR SINE MIR 63 240 -22 252 190 152 38 chr1 64755619 64755698 -217437966 - MIR SINE MIR -63 145 58 299 275 20 56 chr1 64755782 64755915 -217437749 - MIR SINE MIR -63 145 43 346 314 95 0 chr1 64756638 64756775 -217436889 + MIR SINE MIR 45 194 -68 180 77 0 0 chr1 64759974 64760000 -217433664 + (A)n Simple_repeat Simple_repeat 1 26 0 465 322 23 6 chr1 64760702 64760873 -217432791 + MER91B DNA MER1_type 12 185 -5 1759 168 28 0 chr1 64761792 64762078 -217431586 - AluJb SINE Alu -18 294 1 187 345 27 54 chr1 64764528 64764676 -217428988 + L2 LINE L2 2917 3060 -212 485 366 30 49 chr1 64764794 64765122 -217428542 - L2 LINE L2 -19 3253 2932 247 228 0 38 chr1 64765291 64765370 -217428294 + GA-rich Low_complexity Low_complexity 4 79 0 307 332 14 27 chr1 64765870 64766061 -217427603 + MIR SINE MIR 11 200 -62 258 337 59 0 chr1 64766071 64766172 -217427492 + L1ME4a LINE L1 5433 5539 -582 433 216 10 0 chr1 64766180 64766277 -217427387 + MIR SINE MIR 134 231 -31 813 315 36 14 chr1 64766318 64766737 -217426927 + L1ME4a LINE L1 5533 5960 -161 461 313 156 29 chr1 64766877 64767439 -217426225 + L2 LINE L2 2461 3077 -195 1094 140 47 38 chr1 64767634 64767869 -217425795 - L1MB3 LINE L1 -3 6180 5944 339 25 0 0 chr1 64768323 64768363 -217425301 + (CA)n Simple_repeat Simple_repeat 2 41 0 398 230 193 0 chr1 64768707 64768868 -217424796 + MIR SINE MIR 50 241 -21 396 273 54 39 chr1 64769040 64769245 -217424419 + MLT1K LTR MaLR 381 588 0 497 283 100 8 chr1 64769402 64769653 -217424011 + L1MC4a LINE L1 6413 6686 -1122 213 209 0 0 chr1 64769663 64769706 -217423958 + (TCTA)n Simple_repeat Simple_repeat 1 43 0 2357 92 44 6 chr1 64770121 64770459 -217423205 - L1PA10 LINE L1 -6 6162 5812 575 265 71 19 chr1 64770663 64770874 -217422790 - MIR SINE MIR -17 245 24 285 330 141 15 chr1 64771382 64771588 -217422076 + MIR SINE MIR 19 250 -12 2275 201 28 7 chr1 64771636 64772093 -217421571 + MLT1C LTR MaLR 1 467 0 262 152 197 30 chr1 64772218 64772284 -217421380 + MIR3 SINE MIR 110 186 -22 269 363 35 0 chr1 64772711 64772824 -217420840 - MIR SINE MIR -124 138 22 240 248 89 50 chr1 64773071 64773172 -217420492 - L2 LINE L2 -26 3246 3142 387 0 0 0 chr1 64774232 64774275 -217419389 + (CA)n Simple_repeat Simple_repeat 2 44 0 2566 129 53 94 chr1 64775541 64775647 -217418017 + MER67A LTR ERV1 1 110 -433 2266 125 0 0 chr1 64775647 64775958 -217417706 - AluSq SINE Alu -2 311 1 2566 129 53 94 chr1 64775958 64776417 -217417247 + MER67A LTR ERV1 110 543 0 698 293 56 4 chr1 64776539 64776788 -217416876 + MIR SINE MIR 1 262 0 241 259 78 35 chr1 64776799 64776904 -217416760 + L2 LINE L2 3193 3305 -8 1975 133 58 109 chr1 64776904 64777355 -217416309 - MSTA LTR MaLR 0 428 1 305 315 86 10 chr1 64778056 64778264 -217415400 - MIR SINE MIR -6 256 33 1735 133 49 11 chr1 64778349 64778613 -217415051 + MER1B DNA MER1_type 1 274 -65 413 222 0 0 chr1 64778747 64778819 -217414845 + MER1B DNA MER1_type 267 338 -1 276 294 29 52 chr1 64779039 64779175 -217414489 - MIR SINE MIR -110 152 20 894 231 65 8 chr1 64779196 64779443 -217414221 + MIR SINE MIR 2 262 0 275 246 0 14 chr1 64779501 64779570 -217414094 - MIR SINE MIR -159 103 36 340 297 40 20 chr1 64779767 64779868 -217413796 - L2 LINE L2 0 3272 3170 1942 150 53 19 chr1 64779884 64780245 -217413419 + THE1C LTR MaLR 1 373 -2 27 0 0 0 chr1 64780457 64780484 -217413180 + AT_rich Low_complexity Low_complexity 1 27 0 189 213 71 174 chr1 64781065 64781220 -217412444 + MIR SINE MIR 117 255 -7 237 285 134 12 chr1 64781223 64781395 -217412269 + MIR SINE MIR 52 244 -18 1978 143 17 0 chr1 64781416 64781710 -217411954 + AluSx SINE Alu 1 299 -13 186 229 21 0 chr1 64781801 64781849 -217411815 - L2 LINE L2 -1 3271 3223 536 335 12 20 chr1 64783577 64783822 -217409842 - MIR SINE MIR 0 262 20 418 224 216 47 chr1 64784177 64784431 -217409233 + L2 LINE L2 3015 3311 -2 358 355 89 31 chr1 64784433 64784692 -217408972 + L2 LINE L2 2991 3264 -8 226 307 172 59 chr1 64784833 64785071 -217408593 - MLT1I LTR MaLR -8 401 137 2301 89 0 0 chr1 64785324 64785660 -217408004 - AluY SINE Alu 0 337 2 567 265 64 5 chr1 64785807 64786011 -217407653 - MIR SINE MIR 0 262 47 25 31 0 0 chr1 64786322 64786354 -217407310 + AT_rich Low_complexity Low_complexity 1 32 0 290 269 93 19 chr1 64786513 64786621 -217407043 + MIR SINE MIR 38 153 -55 307 302 35 26 chr1 64786692 64786808 -217406856 - L2 LINE L2 0 3313 3197 289 310 116 26 chr1 64786809 64786964 -217406700 + MIR SINE MIR 94 262 0 276 183 0 50 chr1 64787000 64787060 -217406604 + L2 LINE L2 3216 3272 0 996 207 21 42 chr1 64787654 64787891 -217405773 + MIR SINE MIR 31 262 0 200 331 78 42 chr1 64788217 64788340 -217405324 - L2 LINE L2 -162 3110 2980 198 0 0 0 chr1 64788340 64788362 -217405302 + (TGGGGG)n Simple_repeat Simple_repeat 3 24 0 200 331 78 42 chr1 64788362 64788380 -217405284 - L2 LINE L2 -292 2980 2964 362 266 265 6 chr1 64788483 64788685 -217404979 - MIR SINE MIR 0 262 9 340 282 13 94 chr1 64789262 64789332 -217404332 - L2 LINE L2 -14 3258 3205 841 233 7 80 chr1 64789332 64789607 -217404057 - MIR SINE MIR -3 259 5 340 282 13 94 chr1 64789607 64789685 -217403979 - L2 LINE L2 -67 3205 3122 300 83 0 0 chr1 64789776 64789824 -217403840 + (TCTCTG)n Simple_repeat Simple_repeat 1 48 0 295 313 90 30 chr1 64790923 64791124 -217402540 + MIR SINE MIR 23 235 -27 353 348 32 41 chr1 64791191 64791507 -217402157 - L2 LINE L2 -452 2862 2550 218 344 118 0 chr1 64791694 64791787 -217401877 + MER5C DNA MER1_type 16 119 -205 295 159 143 0 chr1 64791905 64791968 -217401696 + MER5C DNA MER1_type 248 319 -5 242 29 29 0 chr1 64792963 64792998 -217400666 + (TG)n Simple_repeat Simple_repeat 2 37 0 314 344 25 6 chr1 64793496 64793659 -217400005 + MIR SINE MIR 14 179 -83 2367 96 0 7 chr1 64794679 64794981 -217398683 + AluSx SINE Alu 1 300 -12 382 278 47 24 chr1 64795393 64795562 -217398102 + MIR SINE MIR 32 204 -58 308 314 101 6 chr1 64796068 64796110 -217397554 + L2 LINE L2 3107 3144 -169 247 179 60 15 chr1 64796110 64796177 -217397487 - LTR11 LTR ERV -197 487 418 308 314 101 6 chr1 64796177 64796227 -217397437 + L2 LINE L2 3144 3280 -33 485 345 26 13 chr1 64796244 64796470 -217397194 + MIR SINE MIR 3 231 -31 459 270 22 22 chr1 64797206 64797343 -217396321 - MIR SINE MIR 0 262 126 228 333 78 0 chr1 64797702 64797792 -217395872 - L2 LINE L2 -5 3267 3171 372 306 19 31 chr1 64797944 64798104 -217395560 + MIR3 SINE MIR 41 198 -10 312 328 82 8 chr1 64798137 64798259 -217395405 - L2 LINE L2 -1 3271 3141 505 312 111 10 chr1 64798310 64798509 -217395155 - MIR SINE MIR -11 251 33 23 0 0 0 chr1 64798544 64798567 -217395097 + AT_rich Low_complexity Low_complexity 1 23 0 680 291 71 41 chr1 64799082 64799446 -217394218 + L2 LINE L2 2939 3313 0 183 258 11 75 chr1 64800353 64800446 -217393218 - L2 LINE L2 -1 3312 3226 349 283 53 9 chr1 64800689 64800802 -217392862 + MIR SINE MIR 22 139 -123 333 209 45 0 chr1 64800853 64800920 -217392744 - MIR SINE MIR -76 186 117 332 197 0 0 chr1 64800936 64800997 -217392667 - MIR SINE MIR -105 157 97 1342 211 75 16 chr1 64801018 64801336 -217392328 - MER58B DNA MER1_type -1 340 4 572 249 102 49 chr1 64802406 64802611 -217391053 + MIR SINE MIR 12 227 -35 464 259 29 29 chr1 64802755 64802894 -217390770 + MIR SINE MIR 3 141 -121 846 184 48 34 chr1 64803016 64803222 -217390442 + MER3 DNA MER1_type 1 209 0 2472 84 3 0 chr1 64803768 64804076 -217389588 + AluSg SINE Alu 1 309 -1 332 273 53 73 chr1 64804917 64805067 -217388597 - MIR SINE MIR -53 209 63 220 272 35 18 chr1 64805211 64805296 -217388368 - MIR SINE MIR -64 144 57 284 286 171 9 chr1 64806195 64806300 -217387364 + MIR SINE MIR 32 153 -109 * 663 264 15 50 chr1 64806291 64806492 -217387172 - MIR SINE MIR 0 262 69 283 395 18 0 chr1 64807714 64807828 -217385836 + MIR SINE MIR 30 145 -63 225 345 53 77 chr1 64807873 64808030 -217385634 - L2 LINE L2 0 3272 3113 2579 134 34 2 chr1 64808030 64808471 -217385193 - L1MB3 LINE L1 -2 6181 5727 225 345 53 77 chr1 64808471 64808780 -217384884 - L2 LINE L2 -159 3113 2817 390 184 0 0 chr1 64808780 64808856 -217384808 + GA-rich Low_complexity Low_complexity 1 76 0 238 266 16 0 chr1 64809026 64809090 -217384574 + MER20B DNA MER1_type 114 178 -605 206 133 0 0 chr1 64809151 64809181 -217384483 + (A)n Simple_repeat Simple_repeat 1 30 0 1139 98 0 0 chr1 64809207 64809380 -217384284 - L1P LINE L1 -1044 5102 4930 749 185 37 0 chr1 64809380 64809514 -217384150 + L1PA8A LINE L1 5991 6130 -1 272 315 167 9 chr1 64809807 64809915 -217383749 + L2 LINE L2 3142 3266 -6 317 275 0 0 chr1 64810549 64810618 -217383046 - MIR SINE MIR -59 149 81 23 0 0 0 chr1 64810634 64810657 -217383007 + AT_rich Low_complexity Low_complexity 1 23 0 388 311 138 20 chr1 64811054 64811250 -217382414 + L1ME4a LINE L1 5478 5696 -425 523 245 144 18 chr1 64811258 64811597 -217382067 + L1ME4a LINE L1 5738 6119 -2 302 328 49 8 chr1 64811606 64811728 -217381936 + MIR SINE MIR 60 186 -76 22 56 0 0 chr1 64812101 64812137 -217381527 + AT_rich Low_complexity Low_complexity 1 36 0 251 295 8 66 chr1 64812552 64812674 -217380990 + MIR SINE MIR 116 230 -32 227 330 150 0 chr1 64813547 64813647 -217380017 - L2 LINE L2 -8 3264 3150 206 371 48 0 chr1 64814015 64814120 -217379544 + MIR SINE MIR 70 179 -83 25 0 0 0 chr1 64814751 64814776 -217378888 + AT_rich Low_complexity Low_complexity 1 25 0 614 245 28 51 chr1 64815053 64815269 -217378395 + L2 LINE L2 3103 3313 0 483 274 52 13 chr1 64815292 64815445 -217378219 + MIR SINE MIR 96 254 -8 1955 121 18 3 chr1 64815467 64815749 -217377915 + AluSx SINE Alu 3 288 -24 276 53 0 0 chr1 64815752 64815790 -217377874 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 660 245 5 43 chr1 64816025 64816209 -217377455 + MER58A DNA MER1_type 48 224 0 415 290 45 60 chr1 64816489 64816689 -217376975 + MIR SINE MIR 20 216 -46 315 293 82 20 chr1 64817219 64817366 -217376298 + MIR3 SINE MIR 53 208 0 387 235 70 0 chr1 64817846 64817961 -217375703 - MIR SINE MIR -40 222 100 2244 151 53 7 chr1 64817971 64818402 -217375262 + L1MA8 LINE L1 5609 6059 -232 799 270 30 33 chr1 64818416 64818753 -217374911 - MER20B DNA MER1_type -447 336 1 302 233 107 19 chr1 64818866 64818969 -217374695 + MIR SINE MIR 97 208 -54 224 279 51 38 chr1 64819455 64819534 -217374130 - L2 LINE L2 -5 3267 3188 204 310 84 0 chr1 64819764 64819835 -217373829 + L2 LINE L2 3191 3267 -5 239 363 88 0 chr1 64819942 64820044 -217373620 + L2 LINE L2 3129 3239 -33 1468 150 0 17 chr1 64820067 64820307 -217373357 + MER46A DNA MER2_type 1 236 0 430 246 222 0 chr1 64820562 64820688 -217372976 + MIR SINE MIR 25 178 -84 691 309 59 59 chr1 64821593 64821898 -217371766 - L3 LINE CR1 -9 1568 1260 2137 101 3 14 chr1 64821898 64822214 -217371450 + AluSx SINE Alu 1 313 0 691 309 59 59 chr1 64822214 64822298 -217371366 - L3 LINE CR1 -316 1261 1178 375 380 52 10 chr1 64822996 64823188 -217370476 - L3 LINE CR1 -405 1172 973 993 245 111 36 chr1 64823383 64823824 -217369840 + MER74B LTR ERVL 66 539 -83 219 36 0 0 chr1 64823824 64823852 -217369812 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2272 137 60 0 chr1 64823893 64824273 -217369391 + L1PA13 LINE L1 5761 6163 0 883 253 73 4 chr1 64824318 64824563 -217369101 + MIR SINE MIR 1 262 0 301 274 39 10 chr1 64824562 64824664 -217369000 + MIR SINE MIR 153 257 -5 * 2524 192 12 0 chr1 64824674 64825175 -217368489 - L1MB3 LINE L1 -2 6181 5675 23 0 0 0 chr1 64826630 64826653 -217367011 + AT_rich Low_complexity Low_complexity 1 23 0 328 274 62 26 chr1 64826902 64827015 -217366649 + L2 LINE L2 3193 3309 -4 342 317 198 0 chr1 64827486 64827653 -217366011 + MIR SINE MIR 31 230 -32 21 0 0 0 chr1 64827659 64827680 -217365984 + AT_rich Low_complexity Low_complexity 1 21 0 410 306 33 33 chr1 64827798 64827978 -217365686 - MIR3 SINE MIR 0 208 29 429 333 64 17 chr1 64828328 64828562 -217365102 + L2 LINE L2 3045 3289 -24 1123 169 58 105 chr1 64828729 64829091 -217364573 + MLT1A1 LTR MaLR 19 363 -2 298 294 39 39 chr1 64829880 64830035 -217363629 - MIR SINE MIR -59 149 34 244 325 68 26 chr1 64830201 64830318 -217363346 + MIR SINE MIR 137 258 -4 307 238 75 71 chr1 64830803 64831012 -217362652 + LTR33A LTR ERVL 43 221 -302 507 286 24 0 chr1 64831082 64831250 -217362414 + LTR33 LTR ERVL 350 521 0 263 355 112 7 chr1 64831510 64831662 -217362002 + MIR SINE MIR 45 212 -50 474 18 0 0 chr1 64832188 64832243 -217361421 + (CA)n Simple_repeat Simple_repeat 1 55 0 363 60 0 0 chr1 64833498 64833548 -217360116 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 459 241 53 57 chr1 64833548 64833813 -217359851 + L1ME4a LINE L1 5855 6118 -3 31 26 0 0 chr1 64833961 64833999 -217359665 + AT_rich Low_complexity Low_complexity 1 38 0 2565 69 0 0 chr1 64834008 64834312 -217359352 + AluSg SINE Alu 1 304 -6 22 35 0 0 chr1 64834514 64834543 -217359121 + AT_rich Low_complexity Low_complexity 1 29 0 283 238 16 0 chr1 64834668 64834731 -217358933 + L2 LINE L2 3249 3312 -1 385 328 72 26 chr1 64835171 64835366 -217358298 + MIR SINE MIR 47 250 -12 308 272 0 39 chr1 64835806 64835909 -217357755 - MIR SINE MIR -115 147 49 301 254 42 0 chr1 64836070 64836141 -217357523 - MIR3 SINE MIR -22 186 113 247 301 117 0 chr1 64836254 64836357 -217357307 - L2 LINE L2 0 3272 3158 290 327 171 37 chr1 64836400 64836617 -217357047 + MIR SINE MIR 13 258 -4 1506 188 52 0 chr1 64836624 64836895 -217356769 - AluJb SINE Alu -12 300 16 332 275 34 67 chr1 64837329 64837478 -217356186 - MIR SINE MIR -34 228 85 293 323 54 0 chr1 64838268 64838398 -217355266 - MIR SINE MIR -15 247 111 3231 226 32 59 chr1 64838421 64839291 -217354373 - L1MB7 LINE L1 -6 6178 5332 188 289 58 0 chr1 64839292 64839344 -217354320 - MIR SINE MIR -193 69 15 239 218 68 42 chr1 64839513 64839622 -217354042 - MIR SINE MIR -52 210 98 513 314 81 24 chr1 64839665 64839913 -217353751 + MIR SINE MIR 1 262 0 369 307 39 0 chr1 64839917 64840044 -217353620 - MER94 DNA DNA -2 132 1 199 345 11 11 chr1 64840094 64840181 -217353483 - L2 LINE L2 -40 3232 3146 674 189 8 0 chr1 64840518 64840640 -217353024 + FLAM_C SINE Alu 11 133 -10 491 244 53 15 chr1 64840912 64841043 -217352621 - L2 LINE L2 0 3313 3178 26 0 0 0 chr1 64841314 64841340 -217352324 + AT_rich Low_complexity Low_complexity 1 26 0 2289 105 0 0 chr1 64841442 64841746 -217351918 - AluSx SINE Alu -6 306 3 228 302 83 77 chr1 64842176 64842345 -217351319 + MIR3 SINE MIR 36 205 -3 29 47 0 0 chr1 64842349 64842392 -217351272 + AT_rich Low_complexity Low_complexity 1 43 0 213 245 0 38 chr1 64842482 64842535 -217351129 - MIR SINE MIR -125 83 33 383 210 20 10 chr1 64842541 64842641 -217351023 - Charlie7 DNA MER1_type -4 2608 2508 2024 143 0 0 chr1 64842674 64842960 -217350704 - AluSx SINE Alu -26 286 1 303 227 68 38 chr1 64842960 64843092 -217350572 - Charlie7 DNA MER1_type -2462 150 15 6629 122 37 24 chr1 64843218 64843261 -217350403 - L1MA2 LINE L1 0 6304 6263 210 37 0 0 chr1 64843261 64843288 -217350376 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2245 84 0 7 chr1 64843288 64843573 -217350091 - AluY SINE Alu -28 283 1 6629 122 37 24 chr1 64843573 64845637 -217348027 - L1MA2 LINE L1 -40 6264 4166 298 328 88 16 chr1 64846019 64846144 -217347520 + L2 LINE L2 3138 3271 -1 1077 212 29 68 chr1 64846994 64847410 -217346254 - MLT1B LTR MaLR 0 374 3 310 299 60 8 chr1 64847483 64847617 -217346047 - MIR SINE MIR -60 202 62 373 303 96 29 chr1 64847624 64847832 -217345832 + MIR SINE MIR 31 252 -10 202 294 188 0 chr1 64848608 64848693 -217344971 - MER5B DNA MER1_type -77 101 1 373 299 47 8 chr1 64849102 64849229 -217344435 + L2 LINE L2 3182 3313 0 210 71 0 0 chr1 64849489 64849517 -217344147 + (A)n Simple_repeat Simple_repeat 1 28 0 400 244 65 16 chr1 64849914 64850037 -217343627 - MIR SINE MIR -74 188 60 536 303 37 67 chr1 64850465 64850762 -217342902 + LTR16A LTR ERVL 156 443 -7 21 57 0 0 chr1 64851234 64851269 -217342395 + AT_rich Low_complexity Low_complexity 1 35 0 888 249 91 38 chr1 64851303 64851676 -217341988 - L1ME4a LINE L1 0 6121 5729 786 306 137 31 chr1 64852676 64853471 -217340193 - L2 LINE L2 0 3313 2426 257 241 147 28 chr1 64853656 64853807 -217339857 + MIR3 SINE MIR 84 256 -6 247 258 0 0 chr1 64855113 64855175 -217338489 - L2 LINE L2 -5 3267 3206 473 255 56 92 chr1 64855179 64855430 -217338234 - MIR SINE MIR -12 250 9 271 349 20 40 chr1 64855778 64855927 -217337737 - MIR SINE MIR -85 177 32 266 259 121 17 chr1 64856458 64856574 -217337090 - MIR SINE MIR -127 135 8 212 333 116 0 chr1 64857499 64857568 -217336096 + L2 LINE L2 3236 3312 -1 186 368 0 0 chr1 64857588 64857645 -217336019 + L2 LINE L2 2434 2490 -824 220 351 69 52 chr1 64857695 64857869 -217335795 + L2 LINE L2 2588 2764 -550 251 302 167 0 chr1 64857914 64858010 -217335654 - L2 LINE L2 -9 3304 3193 1815 167 3 3 chr1 64858406 64858711 -217334953 + AluJo SINE Alu 1 305 0 675 299 6 0 chr1 64858921 64859098 -217334566 - MIR SINE MIR -7 255 78 2707 145 14 63 chr1 64859154 64859617 -217334047 + MER31A LTR ERV1 1 438 -47 2204 134 0 6 chr1 64859617 64859931 -217333733 - AluSx SINE Alu 0 312 1 2707 145 14 63 chr1 64859931 64859977 -217333687 + MER31A LTR ERV1 438 485 0 209 305 0 0 chr1 64859998 64860057 -217333607 + MIR SINE MIR 193 251 -11 465 290 37 12 chr1 64860139 64860301 -217333363 - MIR SINE MIR -76 186 21 2585 147 45 43 chr1 64861491 64861953 -217331711 - MLT1C LTR MaLR 0 467 5 373 345 53 29 chr1 64861958 64862085 -217331579 - MIR SINE MIR -50 212 77 2632 141 30 19 chr1 64862085 64862512 -217331152 - MSTB1 LTR MaLR 0 432 1 373 345 53 29 chr1 64862512 64862590 -217331074 - MIR SINE MIR -185 77 2 2254 123 59 3 chr1 64862891 64863231 -217330433 + MER46B DNA MER2_type 2 235 -1 21 57 0 0 chr1 64863549 64863584 -217330080 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 64864587 64864610 -217329054 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 64864942 64864964 -217328700 + AT_rich Low_complexity Low_complexity 1 22 0 357 305 109 11 chr1 64865561 64865735 -217327929 + MIR SINE MIR 2 192 -70 2368 152 28 3 chr1 64865836 64866191 -217327473 - THE1B LTR MaLR 0 364 1 1439 195 53 102 chr1 64866502 64867100 -217326564 + MER34B LTR ERV1 11 565 0 199 74 0 0 chr1 64867630 64867657 -217326007 + MIR SINE MIR 122 148 -114 463 243 160 61 chr1 64867703 64868157 -217325507 + L1ME3 LINE L1 5466 5937 -225 214 349 87 32 chr1 64870661 64870787 -217322877 + L2 LINE L2 3123 3255 -17 236 222 32 48 chr1 64871364 64871427 -217322237 + MIR SINE MIR 24 85 -177 2156 100 0 0 chr1 64871508 64871817 -217321847 - AluY SINE Alu 0 309 1 185 315 86 37 chr1 64871927 64872089 -217321575 - MIR SINE MIR -44 218 49 355 322 74 61 chr1 64872127 64872453 -217321211 - L2 LINE L2 -21 3251 2922 949 162 8 115 chr1 64872483 64872717 -217320947 - MER3 DNA MER1_type 0 209 1 211 250 85 117 chr1 64873978 64874166 -217319498 + L2 LINE L2 2633 2814 -500 200 279 174 45 chr1 64874615 64874816 -217318848 + L2 LINE L2 2822 3048 -224 235 331 228 14 chr1 64875657 64875802 -217317862 + MER5B DNA MER1_type 2 177 -1 265 329 88 7 chr1 64877293 64877430 -217316234 - MIR SINE MIR -108 154 7 381 280 38 93 chr1 64878455 64878691 -217314973 - MIR SINE MIR -6 256 34 1139 166 11 5 chr1 64879701 64879888 -217313776 - MER5A DNA MER1_type -1 188 1 493 310 40 12 chr1 64879952 64880159 -217313505 - MIR SINE MIR -31 231 14 484 238 167 84 chr1 64881639 64881668 -217311996 + MIR SINE MIR 8 33 -229 1893 156 3 13 chr1 64881668 64881976 -217311688 + AluSx SINE Alu 1 305 -7 484 238 167 84 chr1 64881976 64882173 -217311491 + MIR SINE MIR 33 253 -9 192 40 0 0 chr1 64882183 64882208 -217311456 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 630 188 0 8 chr1 64882423 64882540 -217311124 - L1MB7 LINE L1 -19 6165 6050 2625 136 20 30 chr1 64882563 64883004 -217310660 - L1MA8 LINE L1 -6 6285 5849 2436 58 3 0 chr1 64883014 64883305 -217310359 - AluY SINE Alu -7 304 13 755 250 60 48 chr1 64883432 64883684 -217309980 + MIR SINE MIR 1 255 -7 598 135 0 0 chr1 64883738 64883827 -217309837 - MER5A DNA MER1_type 0 189 101 283 227 53 27 chr1 64883968 64884043 -217309621 + MIR SINE MIR 173 249 -13 180 273 91 50 chr1 64884809 64884908 -217308756 - L2 LINE L2 -2 3311 3209 349 279 62 31 chr1 64885117 64885246 -217308418 - MIR SINE MIR -114 148 16 210 276 166 4 chr1 64885282 64885386 -217308278 + MIR SINE MIR 20 143 -65 584 229 29 71 chr1 64885546 64885876 -217307788 + L1MA10 LINE L1 5863 6333 -1 520 272 47 30 chr1 64886524 64886686 -217306978 - MIR SINE MIR 0 262 95 2154 125 0 26 chr1 64886686 64886999 -217306665 + AluSx SINE Alu 1 305 -7 603 274 59 55 chr1 64887050 64887287 -217306377 - MIR SINE MIR 0 262 25 185 286 0 0 chr1 64887935 64887977 -217305687 - L2 LINE L2 -97 3175 3134 347 222 157 26 chr1 64888104 64888257 -217305407 + L2 LINE L2 2837 3009 -263 369 0 0 0 chr1 64888282 64888323 -217305341 + (CA)n Simple_repeat Simple_repeat 1 41 0 218 293 123 42 chr1 64888328 64888540 -217305124 - L2 LINE L2 -203 3069 2841 27 49 0 0 chr1 64888875 64888916 -217304748 + AT_rich Low_complexity Low_complexity 1 41 0 459 274 94 47 chr1 64889307 64889519 -217304145 + MIR SINE MIR 8 229 -33 356 298 99 33 chr1 64889899 64890020 -217303644 - L2 LINE L2 -3 3269 3141 601 261 172 19 chr1 64890091 64890306 -217303358 + MIR SINE MIR 5 252 -10 196 320 67 0 chr1 64890544 64890619 -217303045 + L2 LINE L2 3193 3272 0 204 260 43 15 chr1 64890691 64890761 -217302903 - MIR SINE MIR -92 116 50 414 169 36 0 chr1 64891235 64891318 -217302346 - L2 LINE L2 -41 3272 3187 22 35 0 0 chr1 64891342 64891371 -217302293 + AT_rich Low_complexity Low_complexity 1 29 0 310 258 102 55 chr1 64891382 64891510 -217302154 + L2 LINE L2 3139 3272 0 222 37 0 0 chr1 64891512 64891539 -217302125 + (CATG)n Simple_repeat Simple_repeat 1 27 0 187 400 0 18 chr1 64892954 64893009 -217300655 + L2 LINE L2 3125 3178 -94 2010 138 0 0 chr1 64893513 64893822 -217299842 - AluSx SINE Alu 0 309 1 23 0 0 0 chr1 64894080 64894103 -217299561 + AT_rich Low_complexity Low_complexity 1 23 0 375 317 113 16 chr1 64894205 64894391 -217299273 + MIR SINE MIR 48 251 -11 235 176 338 0 chr1 64894949 64895017 -217298647 - L2 LINE L2 -14 3299 3209 661 263 25 15 chr1 64895180 64895378 -217298286 - MIR SINE MIR -6 256 57 237 274 0 0 chr1 64895840 64895891 -217297773 + polypurine Low_complexity Low_complexity 2 52 0 227 241 19 19 chr1 64895955 64896009 -217297655 + MIR SINE MIR 18 71 -137 260 139 47 0 chr1 64896426 64896469 -217297195 - PRIMA41-int LTR ERV1 -2624 5132 5088 2301 97 17 0 chr1 64896557 64896901 -217296763 - AluSq SINE Alu 0 349 1 2739 13 0 3 chr1 64897070 64897375 -217296289 - AluYa5 SINE Alu -11 300 2 717 240 52 11 chr1 64897625 64897899 -217295765 - LTR16C LTR ERVL 0 491 182 232 344 0 21 chr1 64898196 64898289 -217295375 + L2 LINE L2 3182 3272 0 404 275 186 10 chr1 64898315 64898508 -217295156 - MIR SINE MIR -35 227 1 613 277 29 26 chr1 64899558 64899765 -217293899 + MIR SINE MIR 18 224 -38 23 0 0 0 chr1 64900427 64900450 -217293214 + AT_rich Low_complexity Low_complexity 1 23 0 300 267 72 56 chr1 64901075 64901255 -217292409 + MIR SINE MIR 9 191 -71 1305 221 123 7 chr1 64901317 64901625 -217292039 - MER2 DNA MER2_type 0 344 1 208 264 189 9 chr1 64901812 64901918 -217291746 - MIR3 SINE MIR -22 186 62 2477 81 0 0 chr1 64901992 64902299 -217291365 - AluY SINE Alu -4 307 1 341 313 37 65 chr1 64902316 64902533 -217291131 - MIR SINE MIR -50 212 2 1059 228 24 54 chr1 64902729 64903063 -217290601 - MER33 DNA MER1_type 0 324 1 1520 177 128 15 chr1 64903679 64904007 -217289657 - MLT1A1 LTR MaLR 0 365 1 217 73 24 24 chr1 64904250 64904261 -217289403 + (CAAAA)n Simple_repeat Simple_repeat 2 12 -30 2517 80 0 3 chr1 64904261 64904573 -217289091 + AluY SINE Alu 1 311 0 217 73 24 24 chr1 64904573 64904602 -217289062 + (CAAAA)n Simple_repeat Simple_repeat 11 42 0 317 295 70 19 chr1 64905797 64905930 -217287734 + MIR SINE MIR 46 190 -62 261 307 61 55 chr1 64906377 64906540 -217287124 - MIR SINE MIR -79 183 20 422 304 152 40 chr1 64907574 64907870 -217285794 - L2 LINE L2 -39 3233 2905 1049 177 78 85 chr1 64908031 64908302 -217285362 + AluJb SINE Alu 1 269 -43 288 53 0 0 chr1 64908897 64908935 -217284729 + (CA)n Simple_repeat Simple_repeat 2 39 0 1496 258 83 34 chr1 64909140 64909636 -217284028 + MLT1E LTR MaLR 74 593 0 233 321 24 12 chr1 64910111 64910195 -217283469 - MIR SINE MIR -79 183 99 7448 38 6 5 chr1 64910202 64911044 -217282620 + L1PA5 LINE L1 5310 6152 -2 474 249 53 89 chr1 64911624 64911849 -217281815 - MIR SINE MIR -6 256 40 231 204 20 0 chr1 64911849 64911898 -217281766 + CT-rich Low_complexity Low_complexity 2 51 0 293 336 40 16 chr1 64913528 64913653 -217280011 + MIR SINE MIR 1 128 -134 * 356 340 20 56 chr1 64913641 64913838 -217279826 + L2 LINE L2 3078 3267 -5 1656 244 97 72 chr1 64914318 64915002 -217278662 + MER21B LTR ERV1 21 721 -142 226 307 68 23 chr1 64915192 64915280 -217278384 - L2 LINE L2 -85 3187 3096 1919 282 105 7 chr1 64915555 64916286 -217277378 + L2 LINE L2 1925 2727 -587 234 0 0 0 chr1 64916305 64916331 -217277333 + (TA)n Simple_repeat Simple_repeat 2 27 0 213 276 19 135 chr1 64916336 64916492 -217277172 - MIR SINE MIR -123 139 2 1655 152 11 0 chr1 64916528 64916791 -217276873 + AluJo SINE Alu 1 266 -46 506 241 118 10 chr1 64916905 64917100 -217276564 - L2 LINE L2 -4 3309 3094 1887 156 3 7 chr1 64917140 64917152 -217276512 - AluJb SINE Alu -6 306 295 387 0 0 0 chr1 64917152 64917195 -217276469 + (TG)n Simple_repeat Simple_repeat 2 44 0 1887 156 3 7 chr1 64917195 64917489 -217276175 - AluJb SINE Alu -17 295 1 414 247 44 60 chr1 64917768 64917950 -217275714 - L1M4 LINE L1 -1402 4744 4566 1018 265 78 64 chr1 64917984 64918659 -217275005 + L1ME3A LINE L1 5256 5940 -222 1839 169 7 10 chr1 64918820 64919127 -217274537 - AluJb SINE Alu -6 306 1 527 274 28 86 chr1 64920194 64920256 -217273408 + MIR SINE MIR 23 87 -175 1239 123 39 0 chr1 64920256 64920460 -217273204 - L1MA4 LINE L1 -5 6295 6084 527 274 28 86 chr1 64920460 64920652 -217273012 + MIR SINE MIR 87 262 0 21 0 0 0 chr1 64920775 64920796 -217272868 + AT_rich Low_complexity Low_complexity 1 21 0 256 346 109 26 chr1 64920990 64921146 -217272518 + L2 LINE L2 3104 3272 0 562 328 35 0 chr1 64921162 64921363 -217272301 - MIR SINE MIR -6 256 49 189 0 0 0 chr1 64921917 64921938 -217271726 + (T)n Simple_repeat Simple_repeat 1 21 0 415 294 17 17 chr1 64922036 64922155 -217271509 - L2 LINE L2 -2 3311 3193 211 271 34 17 chr1 64922189 64922248 -217271416 - MIR3 SINE MIR -36 172 113 1673 16 0 0 chr1 64922885 64923069 -217270595 - AluYa5 SINE Alu -2 309 126 2431 85 0 0 chr1 64923111 64923417 -217270247 + AluSg SINE Alu 1 306 -4 362 309 0 0 chr1 64923960 64924057 -217269607 + MIR SINE MIR 58 154 -108 2303 195 126 47 chr1 64924196 64924776 -217268888 - MLT1E2 LTR MaLR 0 626 1 319 313 32 0 chr1 64924803 64924938 -217268726 + MIR SINE MIR 36 173 -61 292 315 37 19 chr1 64925002 64925110 -217268554 + MIR SINE MIR 147 256 -6 224 286 170 18 chr1 64925194 64925306 -217268358 - MIR SINE MIR -98 164 36 564 233 138 32 chr1 64926494 64926683 -217266981 + MER3 DNA MER1_type 1 209 0 209 343 0 0 chr1 64927328 64927398 -217266266 - MIR SINE MIR -112 150 81 680 181 133 6 chr1 64927775 64927941 -217265723 + MER5A DNA MER1_type 1 187 -2 465 66 0 0 chr1 64928466 64928527 -217265137 + (CA)n Simple_repeat Simple_repeat 1 61 0 815 296 54 47 chr1 64928695 64929100 -217264564 + L2 LINE L2 2873 3280 -33 205 314 64 39 chr1 64929156 64929312 -217264352 + L2 LINE L2 2814 2973 -299 182 321 19 0 chr1 64930006 64930059 -217263605 - L2 LINE L2 -14 3258 3205 291 273 73 9 chr1 64930137 64930247 -217263417 - MIR SINE MIR -109 153 37 261 294 29 39 chr1 64930720 64930822 -217262842 + L2 LINE L2 3212 3312 -1 199 170 64 43 chr1 64932606 64932653 -217261011 + L2 LINE L2 3258 3305 -8 305 274 70 102 chr1 64933835 64933992 -217259672 + L2 LINE L2 3121 3272 0 317 288 65 14 chr1 64934344 64934483 -217259181 + MIR SINE MIR 103 248 -14 527 159 0 11 chr1 64934497 64934585 -217259079 + MSTA LTR MaLR 1 87 -341 9090 135 20 55 chr1 64934586 64934919 -217258745 + MSTA-int LTR MaLR 41 384 -1196 5105 62 0 2 chr1 64934919 64935527 -217258137 - L1PA6 LINE L1 -5 6149 5543 9090 135 20 55 chr1 64935527 64936789 -217256875 + MSTA-int LTR MaLR 384 1580 0 1718 194 131 16 chr1 64936791 64937173 -217256491 + MSTA LTR MaLR 3 428 0 1140 244 40 37 chr1 64937234 64937622 -217256042 + MLT1J1 LTR MaLR 1 389 -61 1237 208 69 75 chr1 64937636 64937982 -217255682 + MER2 DNA MER2_type 1 344 0 236 263 184 0 chr1 64938896 64938972 -217254692 - L2 LINE L2 -22 3291 3202 1869 179 0 3 chr1 64938991 64939304 -217254360 - AluJb SINE Alu 0 312 1 202 376 80 8 chr1 64939583 64939708 -217253956 + L2 LINE L2 3127 3260 -12 390 248 59 10 chr1 64939722 64939823 -217253841 - MIR SINE MIR -70 138 33 30 27 0 0 chr1 64940364 64940401 -217253263 + AT_rich Low_complexity Low_complexity 1 37 0 215 333 87 32 chr1 64940468 64940594 -217253070 - MIR SINE MIR -60 148 16 222 37 0 0 chr1 64944481 64944508 -217249156 + (CA)n Simple_repeat Simple_repeat 2 28 0 418 257 0 37 chr1 64944618 64944727 -217248937 + L2 LINE L2 3209 3313 0 1665 179 17 7 chr1 64945012 64945313 -217248351 + AluJb SINE Alu 1 304 -8 296 323 21 0 chr1 64946029 64946122 -217247542 + MIR SINE MIR 41 135 -73 371 208 42 21 chr1 64947063 64947159 -217246505 - MIR SINE MIR -58 204 107 1506 247 112 28 chr1 64947221 64947687 -217245977 - MLT1D LTR MaLR 0 505 1 367 276 31 16 chr1 64947858 64947985 -217245679 - MIR SINE MIR -109 153 25 296 297 53 103 chr1 64948869 64949249 -217244415 - L2 LINE L2 -60 3212 2852 230 322 42 34 chr1 64949767 64949885 -217243779 - L2 LINE L2 -5 3267 3149 385 333 16 50 chr1 64949932 64950190 -217243474 - MIR SINE MIR -12 250 2 424 257 9 9 chr1 64950251 64950360 -217243304 - MIR3 SINE MIR -31 177 69 763 241 119 21 chr1 64950494 64950730 -217242934 + MIR SINE MIR 1 259 -3 241 239 40 108 chr1 64951008 64951184 -217242480 + L2 LINE L2 3098 3261 -52 256 219 31 47 chr1 64951265 64951329 -217242335 + L2 LINE L2 3209 3271 -1 289 263 120 0 chr1 64951341 64951474 -217242190 + MIR SINE MIR 70 218 -44 350 213 149 0 chr1 64951828 64951922 -217241742 - MIR SINE MIR -109 153 46 558 294 5 32 chr1 64952665 64952753 -217240911 + MIR SINE MIR 66 155 -107 2285 94 0 13 chr1 64952753 64953052 -217240612 - AluSx SINE Alu -17 295 1 558 294 5 32 chr1 64953052 64953150 -217240514 + MIR SINE MIR 155 247 -15 286 374 14 27 chr1 64953421 64953568 -217240096 - MIR3 SINE MIR -46 162 18 338 306 56 43 chr1 64953838 64954070 -217239594 - L2 LINE L2 -5 3308 3074 243 333 8 24 chr1 64954155 64954278 -217239386 - MIR SINE MIR -71 191 71 192 138 46 92 chr1 64954558 64954623 -217239041 - MIR SINE MIR -43 219 158 213 344 39 16 chr1 64954658 64954786 -217238878 - MIR3 SINE MIR -64 144 14 202 280 187 0 chr1 64955819 64955894 -217237770 + MIR SINE MIR 66 154 -108 245 351 96 42 chr1 64955920 64956159 -217237505 + L2 LINE L2 2811 3062 -210 221 193 18 18 chr1 64956334 64956391 -217237273 + (TGAA)n Simple_repeat Simple_repeat 3 59 0 1160 225 202 32 chr1 64956601 64957032 -217236632 + MLT1D LTR MaLR 1 504 -1 181 286 79 16 chr1 64957039 64957102 -217236562 - MIR3 SINE MIR -51 157 91 648 284 96 64 chr1 64958429 64958879 -217234785 - LTR33A LTR ERVL -3 520 57 203 337 12 23 chr1 64959000 64959086 -217234578 + MIR SINE MIR 38 122 -86 278 394 62 0 chr1 64959850 64960010 -217233654 - MIR SINE MIR -8 254 85 348 267 144 17 chr1 64960041 64960221 -217233443 - MIR SINE MIR -13 249 47 457 234 90 0 chr1 64960265 64960376 -217233288 - L2 LINE L2 0 3313 3193 215 231 19 0 chr1 64960412 64960464 -217233200 - L2 LINE L2 -10 3262 3210 296 274 29 142 chr1 64961113 64961387 -217232277 - L2 LINE L2 -15 3257 3015 337 329 72 30 chr1 64962118 64962285 -217231379 - MIR SINE MIR -23 239 66 209 221 84 42 chr1 64962337 64962432 -217231232 + MIR SINE MIR 151 249 -13 618 339 11 8 chr1 64962866 64963126 -217230538 + LTR16B LTR ERVL 1 261 -203 414 88 0 0 chr1 64963150 64963218 -217230446 + (CCTG)n Simple_repeat Simple_repeat 2 69 0 261 0 0 0 chr1 64963218 64963247 -217230417 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 374 267 236 12 chr1 64963939 64964100 -217229564 + MIR SINE MIR 64 260 -2 2229 101 0 3 chr1 64964181 64964479 -217229185 - AluSx SINE Alu -15 297 1 21 0 0 0 chr1 64964479 64964500 -217229164 + AT_rich Low_complexity Low_complexity 1 21 0 215 205 0 0 chr1 64964717 64964756 -217228908 + GA-rich Low_complexity Low_complexity 2 40 0 204 349 30 30 chr1 64965494 64965626 -217228038 + L3 LINE CR1 1080 1211 -366 327 331 27 16 chr1 64965626 64965810 -217227854 + L1ME4a LINE L1 5816 6001 -120 370 236 38 19 chr1 64965812 64965918 -217227746 - MER117 DNA MER1_type -85 112 5 218 261 0 0 chr1 64966058 64966104 -217227560 - L2 LINE L2 -9 3304 3259 228 138 46 15 chr1 64966538 64966603 -217227061 + GA-rich Low_complexity Low_complexity 2 68 0 415 274 117 16 chr1 64966795 64966943 -217226721 + MIR SINE MIR 15 176 -32 392 321 80 5 chr1 64967723 64967910 -217225754 + MIR SINE MIR 1 201 -61 314 254 68 25 chr1 64968451 64968569 -217225095 + MIR SINE MIR 119 241 -21 1044 180 21 0 chr1 64968766 64968955 -217224709 + MER2 DNA MER2_type 9 201 -144 21 36 0 0 chr1 64968958 64968986 -217224678 + AT_rich Low_complexity Low_complexity 1 28 0 397 143 26 39 chr1 64968992 64969069 -217224595 + MER2 DNA MER2_type 269 344 -1 711 176 8 0 chr1 64969070 64969195 -217224469 + L1M3 LINE L1 5645 5770 -401 395 265 133 28 chr1 64969627 64969808 -217223856 + MIR SINE MIR 3 202 -60 274 204 56 0 chr1 64970462 64970516 -217223148 - L2 LINE L2 -4 3268 3212 612 340 51 59 chr1 64970680 64971461 -217222203 - L2 LINE L2 -2 3270 2502 2086 122 0 3 chr1 64971516 64971804 -217221860 + AluSx SINE Alu 23 309 -3 209 285 158 42 chr1 64971810 64971975 -217221689 - L2 LINE L2 -254 3018 2835 211 357 56 35 chr1 64972591 64972734 -217220930 + MIR3 SINE MIR 5 150 -58 673 301 5 10 chr1 64973079 64973275 -217220389 - MIR SINE MIR -48 214 20 265 333 37 9 chr1 64973364 64973472 -217220192 + MIR3 SINE MIR 13 123 -85 287 318 19 70 chr1 64974051 64974208 -217219456 - MIR SINE MIR -65 143 17 195 42 0 0 chr1 64974849 64974873 -217218791 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2047 107 4 14 chr1 64974882 64975162 -217218502 - AluSq SINE Alu -36 277 1 484 292 7 19 chr1 64975214 64975368 -217218296 - MIR3 SINE MIR -56 152 1 455 290 147 35 chr1 64976303 64976659 -217217005 + L1M4 LINE L1 3628 3943 -2203 207 0 0 0 chr1 64976659 64976682 -217216982 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 1624 187 0 11 chr1 64976682 64976965 -217216699 - AluJo SINE Alu -32 280 1 455 290 147 35 chr1 64976965 64977159 -217216505 + L1M4 LINE L1 3942 4241 -1905 2101 121 0 0 chr1 64977369 64977702 -217215962 - AluSx SINE Alu 0 333 1 195 42 0 0 chr1 64977880 64977904 -217215760 + (ATG)n Simple_repeat Simple_repeat 2 25 0 1571 234 51 11 chr1 64977961 64978311 -217215353 + MLT1A2 LTR MaLR 11 374 0 329 311 39 0 chr1 64978323 64978426 -217215238 + GA-rich Low_complexity Low_complexity 5 111 0 655 291 64 8 chr1 64978432 64978666 -217214998 - MIR SINE MIR -1 261 15 180 296 19 0 chr1 64979630 64979684 -217213980 - L2 LINE L2 -32 3281 3227 947 230 11 0 chr1 64979910 64980097 -217213567 + MER5A DNA MER1_type 1 189 0 190 171 14 171 chr1 64981398 64981468 -217212196 - L2 LINE L2 0 3313 3255 26 0 0 0 chr1 64982227 64982253 -217211411 + AT_rich Low_complexity Low_complexity 1 26 0 220 217 0 22 chr1 64982257 64982303 -217211361 - L2 LINE L2 -5 3267 3223 204 40 0 0 chr1 64982636 64982661 -217211003 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 191 234 0 0 chr1 64982664 64982711 -217210953 - L2 LINE L2 -308 2964 2918 712 255 25 35 chr1 64982951 64983151 -217210513 + MIR SINE MIR 57 254 -8 551 298 25 15 chr1 64984199 64984397 -217209267 - MIR SINE MIR -3 259 60 1902 201 69 10 chr1 64984441 64984845 -217208819 + L1MB5 LINE L1 5740 6167 -7 233 94 0 0 chr1 64985138 64985170 -217208494 + MIR SINE MIR 117 148 -114 3625 268 84 43 chr1 64985236 64987106 -217206558 + L1MC4 LINE L1 5949 7714 -94 279 235 33 71 chr1 64987105 64987303 -217206361 + L1MC4 LINE L1 2007 8322 0 * 26 0 0 0 chr1 64987727 64987753 -217205911 + AT_rich Low_complexity Low_complexity 1 26 0 218 190 52 0 chr1 64988875 64988933 -217204731 + MIR SINE MIR 120 180 -82 322 278 22 70 chr1 64989340 64989483 -217204181 + MIR SINE MIR 2 148 -63 201 255 0 20 chr1 64989570 64989621 -217204043 + CT-rich Low_complexity Low_complexity 2 51 0 286 308 69 15 chr1 64989781 64989911 -217203753 - L2 LINE L2 -4 3309 3173 248 273 106 23 chr1 64990302 64990434 -217203230 + Charlie7 DNA MER1_type 22 164 -2448 180 338 39 39 chr1 64990787 64990864 -217202800 - L2 LINE L2 -10 3262 3186 551 153 147 93 chr1 64992123 64992208 -217201456 - MER5B DNA MER1_type -18 160 62 1040 183 0 18 chr1 64992208 64992377 -217201287 - FRAM SINE Alu 0 166 1 551 153 147 93 chr1 64992377 64992441 -217201223 - MER5B DNA MER1_type -116 62 3 261 321 117 17 chr1 64992441 64992629 -217201035 + MIR SINE MIR 30 241 -21 262 119 0 85 chr1 64992630 64992689 -217200975 + MLT1E2 LTR MaLR 2 55 -571 379 207 0 46 chr1 64992845 64992932 -217200732 + MLT1E2 LTR MaLR 2 84 -542 2122 144 117 52 chr1 64993639 64994041 -217199623 - MSTA LTR MaLR 0 428 1 559 276 75 20 chr1 64994098 64994297 -217199367 + MIR SINE MIR 47 256 -6 968 261 77 59 chr1 64994658 64995153 -217198511 - LTR33 LTR ERVL -12 509 6 2578 65 0 0 chr1 64995297 64995607 -217198057 + AluY SINE Alu 1 310 -1 390 333 60 26 chr1 64995624 64995858 -217197806 - MIR SINE MIR -19 243 2 198 0 0 0 chr1 64996123 64996145 -217197519 + (T)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr1 64996387 64996415 -217197249 + AT_rich Low_complexity Low_complexity 1 28 0 316 331 16 24 chr1 64998385 64998509 -217195155 - MIR SINE MIR -63 145 23 1504 125 65 0 chr1 64998556 64998772 -217194892 - MER30 DNA MER1_type 0 230 1 308 348 65 3 chr1 64998780 64998917 -217194747 - MIR SINE MIR -62 146 2 956 303 47 29 chr1 64999694 65000080 -217193584 - L2 LINE L2 -109 3204 2812 184 357 48 24 chr1 65000161 65000287 -217193377 + MIR SINE MIR 39 167 -95 202 282 64 0 chr1 65000348 65000426 -217193238 - MIR SINE MIR -71 191 109 634 283 20 0 chr1 65000462 65000614 -217193050 + FRAM SINE Alu 4 158 -18 195 139 0 0 chr1 65000623 65000659 -217193005 + (CAGA)n Simple_repeat Simple_repeat 3 38 0 207 0 0 0 chr1 65001128 65001151 -217192513 + (CA)n Simple_repeat Simple_repeat 1 23 0 186 186 23 0 chr1 65001543 65001586 -217192078 + MIR SINE MIR 99 142 -120 280 298 71 0 chr1 65001811 65001895 -217191769 - MIR3 SINE MIR -13 195 106 282 298 71 0 chr1 65001997 65002081 -217191583 - MIR3 SINE MIR -13 195 106 586 210 0 29 chr1 65003021 65003159 -217190505 + ORSL DNA AcHobo 142 275 0 1779 171 98 0 chr1 65003383 65003688 -217189976 + MLT1A1 LTR MaLR 31 365 0 193 311 57 19 chr1 65004062 65004168 -217189496 + MIR SINE MIR 94 203 -59 789 203 0 0 chr1 65004246 65004379 -217189285 + FLAM_A SINE Alu 1 133 0 431 304 191 18 chr1 65004707 65005042 -217188622 + L2 LINE L2 2921 3313 0 229 296 0 0 chr1 65005042 65005096 -217188568 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 2346 76 0 0 chr1 65005121 65005411 -217188253 - AluY SINE Alu -21 290 1 214 258 219 13 chr1 65005536 65005691 -217187973 - MIR SINE MIR -13 249 63 1890 200 85 83 chr1 65006450 65007041 -217186623 + MLT1E LTR MaLR 1 592 -1 184 265 71 51 chr1 65007084 65007182 -217186482 + L2 LINE L2 3002 3101 -212 516 284 161 0 chr1 65007243 65007398 -217186266 + MER5A DNA MER1_type 9 188 -1 189 0 0 0 chr1 65007765 65007786 -217185878 + (A)n Simple_repeat Simple_repeat 1 21 0 197 282 16 73 chr1 65008079 65008203 -217185461 + L2 LINE L2 2976 3092 -180 207 0 0 0 chr1 65008341 65008364 -217185300 + (A)n Simple_repeat Simple_repeat 1 23 0 402 255 96 25 chr1 65009508 65009790 -217183874 + MSTA LTR MaLR 1 597 -12 841 110 19 58 chr1 65009806 65009961 -217183703 + THE1C LTR MaLR 225 373 -2 901 263 24 32 chr1 65010320 65010571 -217183093 - MIR SINE MIR -12 250 2 373 274 129 0 chr1 65010651 65010775 -217182889 - MIR SINE MIR -121 141 2 287 402 16 5 chr1 65010982 65011171 -217182493 + L2 LINE L2 2154 2344 -970 183 225 0 0 chr1 65011185 65011222 -217182442 - L3 LINE CR1 -5 1572 1536 184 343 15 15 chr1 65011222 65011289 -217182375 + MIR3 SINE MIR 4 70 -138 234 328 31 23 chr1 65011297 65011425 -217182239 + MIR SINE MIR 129 257 -5 933 275 63 39 chr1 65011465 65011829 -217181835 - L3 LINE CR1 -59 1518 1146 484 257 103 0 chr1 65012418 65012554 -217181110 + MER5B DNA MER1_type 5 154 -24 435 182 0 30 chr1 65012620 65012728 -217180936 - MER5A DNA MER1_type -80 109 6 275 296 31 31 chr1 65012852 65012950 -217180714 - L2 LINE L2 -147 3125 3028 200 360 97 18 chr1 65013200 65013314 -217180350 + L2 LINE L2 3149 3271 -1 386 316 101 7 chr1 65015000 65015139 -217178525 + MIR SINE MIR 90 241 -21 223 302 16 0 chr1 65015213 65015276 -217178388 + L2 LINE L2 3149 3212 -60 195 363 50 0 chr1 65015513 65015593 -217178071 + MIR3 SINE MIR 99 182 -26 342 259 98 9 chr1 65015618 65015730 -217177934 - L2 LINE L2 -1 3271 3150 292 244 22 33 chr1 65016056 65016146 -217177518 + MER103 DNA DNA 46 134 -32 1704 164 42 31 chr1 65016149 65016503 -217177161 - MLT1A2 LTR MaLR -1 373 16 1556 202 0 7 chr1 65016541 65016854 -217176810 - AluJb SINE Alu 0 311 1 389 317 21 0 chr1 65017905 65018047 -217175617 + MER117 DNA MER1_type 3 147 -50 265 299 41 68 chr1 65018202 65018349 -217175315 - MIR3 SINE MIR -65 143 1 202 221 74 40 chr1 65018807 65018896 -217174768 - MIR SINE MIR -112 96 20 180 0 0 0 chr1 65019859 65019879 -217173785 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 542 255 46 39 chr1 65019993 65020146 -217173518 + MIR SINE MIR 17 170 -38 368 274 42 0 chr1 65020266 65020361 -217173303 + L2 LINE L2 3158 3256 -16 238 269 75 30 chr1 65020466 65020600 -217173064 + L2 LINE L2 2925 3064 -208 418 289 53 26 chr1 65020855 65021007 -217172657 - MIR SINE MIR -19 243 88 365 284 0 11 chr1 65021033 65021121 -217172543 + MIR SINE MIR 2 88 -174 397 304 95 78 chr1 65021359 65021563 -217172101 + MLT1J LTR MaLR 224 423 -192 186 43 0 0 chr1 65021563 65021586 -217172078 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1944 128 14 14 chr1 65021591 65021872 -217171792 - AluSx SINE Alu -31 281 1 397 304 95 78 chr1 65021872 65021957 -217171707 + MLT1J LTR MaLR 426 602 -13 356 247 60 27 chr1 65021971 65022121 -217171543 + MIR SINE MIR 108 262 0 196 252 93 101 chr1 65022342 65022481 -217171183 - MIR3 SINE MIR -68 140 3 * 540 325 90 31 chr1 65022481 65022834 -217170830 + L2 LINE L2 2868 3241 -72 487 346 40 0 chr1 65022898 65023100 -217170564 + MIR SINE MIR 47 256 -6 587 246 7 0 chr1 65023275 65023417 -217170247 + MIR SINE MIR 120 262 0 338 302 129 52 chr1 65023876 65024108 -217169556 + MIR SINE MIR 8 257 -5 383 264 0 0 chr1 65024141 65024232 -217169432 - MIR SINE MIR -25 237 147 792 232 72 0 chr1 65024249 65024443 -217169221 - MIR SINE MIR -1 261 54 246 199 19 0 chr1 65024497 65024550 -217169114 - MIR SINE MIR -61 147 101 456 283 236 5 chr1 65026129 65026320 -217167344 - MIR SINE MIR -26 236 2 325 252 56 43 chr1 65026435 65026575 -217167089 - MIR SINE MIR -58 150 12 934 280 229 27 chr1 65026712 65027340 -217166324 + L2 LINE L2 2536 3312 -1 392 110 0 41 chr1 65027444 65027517 -217166147 + (TTCCC)n Simple_repeat Simple_repeat 5 74 0 181 119 48 0 chr1 65027539 65027581 -217166083 + CT-rich Low_complexity Low_complexity 1 44 0 1811 184 0 3 chr1 65027594 65027893 -217165771 - AluJb SINE Alu -14 298 1 243 330 121 15 chr1 65028323 65028529 -217165135 + MIR SINE MIR 11 238 -24 274 246 0 0 chr1 65028542 65028599 -217165065 + MIR SINE MIR 93 149 -113 2356 73 3 22 chr1 65028746 65029063 -217164601 - AluY SINE Alu 0 311 1 487 296 34 2 chr1 65030617 65030819 -217162845 - MIR SINE MIR -6 256 10 471 250 138 0 chr1 65031546 65031706 -217161958 - MIR SINE MIR -2 260 79 403 362 75 39 chr1 65031734 65032093 -217161571 + L2 LINE L2 2896 3267 -5 4529 100 145 140 chr1 65032196 65033583 -217160081 - pTR5 LTR ERV1 0 2438 740 707 287 12 24 chr1 65033585 65033836 -217159828 - MIR SINE MIR -13 249 2 367 257 119 40 chr1 65034344 65034570 -217159094 + MIR SINE MIR 19 262 0 298 299 48 48 chr1 65035596 65035743 -217157921 - MIR SINE MIR -111 151 5 276 282 78 88 chr1 65036046 65036330 -217157334 + L2 LINE L2 3033 3313 0 703 281 69 25 chr1 65036479 65036753 -217156911 - L2 LINE L2 0 3313 3028 183 200 0 160 chr1 65036875 65036950 -217156714 + MIR SINE MIR 118 180 -82 239 325 0 0 chr1 65036965 65037048 -217156616 + MIR3 SINE MIR 120 202 -6 306 269 101 25 chr1 65037755 65037874 -217155790 - L2 LINE L2 -8 3264 3137 298 249 121 75 chr1 65038076 65038249 -217155415 - MIR SINE MIR -33 229 49 443 297 31 61 chr1 65039722 65039951 -217153713 - MIR SINE MIR -6 256 35 576 312 73 8 chr1 65040624 65040858 -217152806 - MIR SINE MIR -12 250 2 395 299 37 18 chr1 65041801 65041965 -217151699 + MIR SINE MIR 69 235 -27 516 284 21 0 chr1 65042147 65042288 -217151376 - MIR SINE MIR -80 182 39 1060 179 11 159 chr1 65042337 65042720 -217150944 + MLT2D LTR ERVL 57 369 -45 321 26 0 0 chr1 65042720 65042758 -217150906 + (CA)n Simple_repeat Simple_repeat 1 38 0 1060 179 11 159 chr1 65042758 65042799 -217150865 + MLT2D LTR ERVL 369 414 0 280 313 115 0 chr1 65042850 65042946 -217150718 - L2 LINE L2 -4 3268 3162 211 355 130 41 chr1 65042951 65043120 -217150544 + L2 LINE L2 3085 3268 -4 216 319 0 29 chr1 65043212 65043281 -217150383 - MIR SINE MIR -113 149 83 21 0 0 0 chr1 65043825 65043846 -217149818 + AT_rich Low_complexity Low_complexity 1 21 0 227 206 20 20 chr1 65044754 65044856 -217148808 + CT-rich Low_complexity Low_complexity 3 104 0 644 53 0 11 chr1 65044925 65045019 -217148645 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 387 0 0 0 chr1 65045479 65045522 -217148142 + (CA)n Simple_repeat Simple_repeat 2 44 0 647 263 95 25 chr1 65045527 65045770 -217147894 + L2 LINE L2 3047 3306 -7 295 299 115 25 chr1 65045886 65046043 -217147621 + MIR SINE MIR 92 262 0 641 281 62 6 chr1 65046518 65046696 -217146968 + MIR SINE MIR 65 252 -10 253 246 182 45 chr1 65046891 65047001 -217146663 + MIR SINE MIR 63 187 -75 572 142 121 7 chr1 65047055 65047196 -217146468 - L1 LINE L1 -1650 4496 4340 2384 121 25 6 chr1 65047205 65047561 -217146103 - THE1C LTR MaLR -12 363 1 3130 138 8 0 chr1 65047567 65048061 -217145603 - L1 LINE L1 -1812 4334 3837 * 5612 146 41 10 chr1 65048060 65049820 -217143844 + L1MA8 LINE L1 4472 6286 -5 29 28 0 0 chr1 65049821 65049857 -217143807 + AT_rich Low_complexity Low_complexity 1 36 0 221 346 114 25 chr1 65050491 65050693 -217142971 - L2 LINE L2 0 3272 3053 301 259 44 102 chr1 65051188 65051393 -217142271 + MLT1I LTR MaLR 110 302 -107 436 318 35 6 chr1 65051763 65051933 -217141731 + MIR SINE MIR 88 262 0 1684 190 123 3 chr1 65052067 65052393 -217141271 + MLT1A1 LTR MaLR 1 365 0 191 167 0 21 chr1 65052405 65052453 -217141211 + (CA)n Simple_repeat Simple_repeat 2 48 0 575 179 106 0 chr1 65053101 65053224 -217140440 + MIR SINE MIR 119 254 -8 249 305 24 12 chr1 65053229 65053311 -217140353 - MIR SINE MIR -60 148 66 328 258 132 54 chr1 65053954 65054121 -217139543 + MIR3 SINE MIR 1 180 -28 313 276 160 4 chr1 65054189 65054414 -217139250 + L1ME3 LINE L1 5688 5947 -215 204 40 0 0 chr1 65054441 65054466 -217139198 + (TA)n Simple_repeat Simple_repeat 1 25 0 201 162 27 14 chr1 65054668 65054742 -217138922 + (TA)n Simple_repeat Simple_repeat 2 76 0 516 127 50 0 chr1 65054778 65055001 -217138663 + (TA)n Simple_repeat Simple_repeat 1 234 0 203 321 46 53 chr1 65055314 65055445 -217138219 - MIR SINE MIR -98 164 35 255 297 0 0 chr1 65056129 65056193 -217137471 + L2 LINE L2 3207 3270 -2 909 277 35 23 chr1 65056200 65056456 -217137208 - MIR SINE MIR -2 260 2 1652 186 31 0 chr1 65056523 65056642 -217137022 + AluJb SINE Alu 1 115 -197 612 0 0 0 chr1 65056642 65056710 -217136954 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 1652 186 31 0 chr1 65056710 65056880 -217136784 + AluJb SINE Alu 115 299 -13 248 315 41 0 chr1 65057036 65057109 -217136555 + MIR SINE MIR 112 187 -75 5152 201 44 33 chr1 65057185 65058366 -217135298 + MER52A LTR ERV1 3 1196 -559 350 206 0 14 chr1 65058356 65058429 -217135235 + MER52A LTR ERV1 1682 1753 -2 * 191 300 133 25 chr1 65058661 65058781 -217134883 + MIR SINE MIR 2 134 -128 198 217 50 67 chr1 65059255 65059315 -217134349 + MIR SINE MIR 22 80 -182 336 274 163 35 chr1 65059491 65059853 -217133811 + L2 LINE L2 2872 3311 -2 311 358 16 27 chr1 65059895 65060082 -217133582 + MIR3 SINE MIR 10 194 -14 247 260 0 41 chr1 65060144 65060217 -217133447 + GA-rich Low_complexity Low_complexity 1 70 0 234 297 40 27 chr1 65060218 65060292 -217133372 + MIR3 SINE MIR 84 158 -50 291 256 152 0 chr1 65061137 65061262 -217132402 - L2 LINE L2 -2 3311 3168 1147 168 112 0 chr1 65061371 65061568 -217132096 + MER20 DNA MER1_type 1 219 0 1854 145 0 46 chr1 65062485 65062809 -217130855 + AluJo SINE Alu 3 311 -1 399 298 50 8 chr1 65064281 65064402 -217129262 - MER5B DNA MER1_type -2 176 51 373 310 92 11 chr1 65064842 65065026 -217128638 - MIR SINE MIR -48 214 16 359 282 15 33 chr1 65065029 65065233 -217128431 - MIR SINE MIR -1 261 13 306 279 0 0 chr1 65065372 65065440 -217128224 + L2 LINE L2 3234 3301 -12 553 233 8 8 chr1 65066053 65066173 -217127491 + L2 LINE L2 3193 3312 -1 368 291 158 8 chr1 65066184 65066311 -217127353 + L2 LINE L2 3127 3272 0 2316 111 0 3 chr1 65066578 65066885 -217126779 + AluSx SINE Alu 3 308 -4 543 294 22 16 chr1 65066921 65067105 -217126559 + MER5A DNA MER1_type 2 186 -3 1230 262 85 25 chr1 65067286 65067770 -217125894 - LTR33 LTR ERVL -8 513 1 215 319 0 29 chr1 65068536 65068605 -217125059 + MIR3 SINE MIR 9 75 -133 542 271 175 7 chr1 65069421 65069617 -217124047 + MIR SINE MIR 42 262 0 458 232 152 7 chr1 65069668 65069806 -217123858 - MIR SINE MIR 0 262 105 258 176 0 0 chr1 65070128 65070179 -217123485 + (ATG)n Simple_repeat Simple_repeat 3 53 0 228 263 146 23 chr1 65071821 65071959 -217121705 + MIR SINE MIR 31 182 -62 329 254 116 60 chr1 65071970 65072004 -217121660 - L2 LINE L2 0 3313 3282 1792 226 72 33 chr1 65072004 65072487 -217121177 - MLT1D LTR MaLR 0 505 4 329 254 116 60 chr1 65072487 65072801 -217120863 - L2 LINE L2 -31 3282 807 4997 172 45 20 chr1 65073116 65074495 -217119169 + L1MB2 LINE L1 4756 6169 -2 378 293 114 12 chr1 65075049 65075216 -217118448 - L2 LINE L2 0 3272 3089 471 326 64 17 chr1 65075524 65075760 -217117904 + MIR SINE MIR 4 250 -12 280 291 51 13 chr1 65075801 65075880 -217117784 - L2 LINE L2 -44 3269 3188 198 0 0 0 chr1 65075956 65075978 -217117686 + (A)n Simple_repeat Simple_repeat 1 22 0 439 270 9 18 chr1 65076126 65076237 -217117427 - MIR3 SINE MIR -13 195 86 309 51 0 0 chr1 65076317 65076356 -217117308 + (TG)n Simple_repeat Simple_repeat 2 40 0 636 282 64 9 chr1 65076661 65076881 -217116783 + MIR SINE MIR 16 247 -15 2210 133 0 0 chr1 65077132 65077441 -217116223 + AluSg SINE Alu 1 309 -1 216 182 0 0 chr1 65079221 65079265 -217114399 + GA-rich Low_complexity Low_complexity 2 45 0 335 316 72 6 chr1 65079512 65079650 -217114014 - MIR SINE MIR -62 146 4 432 288 77 29 chr1 65079807 65079977 -217113687 + MIR SINE MIR 20 197 -65 231 251 108 5 chr1 65080616 65080728 -217112936 - MIR3 SINE MIR -119 89 3 300 27 0 0 chr1 65081356 65081393 -217112271 + (CA)n Simple_repeat Simple_repeat 2 38 0 1987 121 11 4 chr1 65081673 65081979 -217111685 + AluSg SINE Alu 1 308 0 276 356 150 30 chr1 65082021 65082414 -217111250 - L2 LINE L2 -1 3271 2832 196 387 0 11 chr1 65082509 65082602 -217111062 + MIR SINE MIR 1 92 -170 676 65 11 0 chr1 65082614 65082707 -217110957 - L1MA8 LINE L1 -4 6287 6194 414 171 95 29 chr1 65082715 65082820 -217110844 + MIR SINE MIR 81 192 -70 1321 157 146 19 chr1 65082992 65083253 -217110411 + AluJb SINE Alu 1 294 -18 1088 200 47 19 chr1 65083270 65083485 -217110179 + MER58A DNA MER1_type 4 224 0 451 173 127 0 chr1 65084304 65084414 -217109250 + MER103 DNA DNA 36 159 -7 2131 123 0 3 chr1 65084606 65084907 -217108757 - AluSx SINE Alu -12 300 1 246 314 105 0 chr1 65085052 65085157 -217108507 - MIR SINE MIR -6 256 141 760 194 106 50 chr1 65085157 65085337 -217108327 + MER3 DNA MER1_type 20 209 0 203 61 30 0 chr1 65085897 65085930 -217107734 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 630 246 42 30 chr1 65086117 65086284 -217107380 + MIR SINE MIR 8 176 -86 268 294 267 30 chr1 65086570 65086873 -217106791 - L3 LINE CR1 -5 1572 1198 266 358 44 0 chr1 65087011 65087148 -217106516 - L2 LINE L2 -7 3265 3123 323 337 107 0 chr1 65087399 65087577 -217106087 - L3 LINE CR1 -744 833 637 251 362 54 29 chr1 65087654 65087933 -217105731 - L2 LINE L2 -2 3270 2985 299 343 29 36 chr1 65088722 65088862 -217104802 + L2 LINE L2 3128 3266 -6 512 200 0 0 chr1 65089182 65089272 -217104392 - MIR SINE MIR -61 147 58 475 291 55 20 chr1 65091126 65091325 -217102339 - MIR3 SINE MIR -2 206 1 1292 268 101 33 chr1 65092565 65093051 -217100613 + MLT1K LTR MaLR 59 577 -11 1004 175 36 21 chr1 65093296 65093490 -217100174 - MER3 DNA MER1_type -4 205 9 253 335 66 0 chr1 65093837 65093989 -217099675 - MIR SINE MIR -1 261 100 397 281 221 17 chr1 65095039 65095274 -217098390 + MER102a DNA MER1_type 39 321 -9 222 289 26 13 chr1 65095679 65095755 -217097909 + L2 LINE L2 3160 3236 -36 182 114 0 45 chr1 65096112 65096156 -217097508 + (CAT)n Simple_repeat Simple_repeat 1 42 0 373 282 173 0 chr1 65097054 65097210 -217096454 - MIR SINE MIR -26 236 54 243 282 32 57 chr1 65097198 65097292 -217096372 + MIR SINE MIR 117 209 -53 * 273 29 0 0 chr1 65097292 65097326 -217096338 + (TG)n Simple_repeat Simple_repeat 2 35 0 243 282 32 57 chr1 65097326 65097355 -217096309 + MIR SINE MIR 209 237 -25 229 257 40 89 chr1 65097502 65097603 -217096061 + MIR SINE MIR 57 152 -56 1143 221 52 43 chr1 65097737 65098062 -217095602 - MER46C DNA MER2_type -2 336 9 542 264 66 74 chr1 65098316 65098558 -217095106 + LTR33A LTR ERVL 3 242 -281 300 254 105 9 chr1 65098731 65098845 -217094819 + LTR33A LTR ERVL 348 472 -51 2330 105 0 0 chr1 65099040 65099345 -217094319 + AluSg SINE Alu 1 305 -5 266 213 0 16 chr1 65099598 65099659 -217094005 + GA-rich Low_complexity Low_complexity 3 62 0 264 268 130 16 chr1 65100763 65100886 -217092778 + MIR3 SINE MIR 9 145 -63 14780 126 23 31 chr1 65101381 65102971 -217090693 + Tigger1 DNA MER2_type 1 1568 -850 2330 83 0 10 chr1 65102971 65103273 -217090391 + AluY SINE Alu 1 299 -12 14780 126 23 31 chr1 65103273 65104118 -217089546 + Tigger1 DNA MER2_type 1568 2418 0 542 249 51 36 chr1 65104232 65104566 -217089098 + L1M4 LINE L1 4357 4695 -1451 383 56 19 0 chr1 65104745 65104799 -217088865 + (CA)n Simple_repeat Simple_repeat 1 55 0 444 222 28 57 chr1 65104804 65104980 -217088684 + L1M4 LINE L1 4995 5165 -981 201 222 0 37 chr1 65106269 65106323 -217087341 - L2 LINE L2 0 3313 3262 836 85 78 0 chr1 65106753 65106882 -217086782 + MER85 DNA T2_type 1 139 0 237 288 98 20 chr1 65107027 65107180 -217086484 + MER103 DNA DNA 2 166 0 313 324 116 68 chr1 65107349 65107685 -217085979 + L2 LINE L2 2916 3267 -5 219 292 11 0 chr1 65107795 65107884 -217085780 + GA-rich Low_complexity Low_complexity 3 92 0 27 0 0 0 chr1 65108249 65108276 -217085388 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 65108994 65109016 -217084648 + AT_rich Low_complexity Low_complexity 1 22 0 778 223 86 45 chr1 65109174 65109394 -217084270 - MIR SINE MIR -30 232 4 1028 265 27 12 chr1 65109777 65110034 -217083630 + MIR SINE MIR 2 262 0 194 317 79 40 chr1 65110049 65110150 -217083514 - MIR SINE MIR -157 105 1 255 239 134 30 chr1 65110165 65110299 -217083365 - MIR SINE MIR -12 250 103 283 274 49 29 chr1 65160999 65161101 -217032563 - MIR SINE MIR -143 119 16 359 282 15 33 chr1 65161104 65161308 -217032356 - MIR SINE MIR -1 261 13 306 279 0 0 chr1 65161447 65161515 -217032149 + L2 LINE L2 3234 3301 -12 553 233 8 8 chr1 65162128 65162248 -217031416 + L2 LINE L2 3193 3312 -1 368 291 158 8 chr1 65162259 65162386 -217031278 + L2 LINE L2 3127 3272 0 2316 111 0 3 chr1 65162653 65162960 -217030704 + AluSx SINE Alu 3 308 -4 543 294 22 16 chr1 65162996 65163180 -217030484 + MER5A DNA MER1_type 2 186 -3 1230 262 85 25 chr1 65163361 65163845 -217029819 - LTR33 LTR ERVL -8 513 1 215 319 0 29 chr1 65164611 65164680 -217028984 + MIR3 SINE MIR 9 75 -133 542 271 175 7 chr1 65165496 65165692 -217027972 + MIR SINE MIR 42 262 0 458 232 152 7 chr1 65165743 65165881 -217027783 - MIR SINE MIR 0 262 105 258 176 0 0 chr1 65166203 65166254 -217027410 + (ATG)n Simple_repeat Simple_repeat 3 53 0 219 273 146 23 chr1 65167896 65168034 -217025630 + MIR SINE MIR 31 182 -62 307 262 117 55 chr1 65168045 65168079 -217025585 - L2 LINE L2 0 3313 3283 1822 224 72 33 chr1 65168079 65168565 -217025099 - MLT1D LTR MaLR 0 505 1 307 262 117 55 chr1 65168565 65168877 -217024787 - L2 LINE L2 -30 3283 807 4997 173 45 20 chr1 65169192 65170570 -217023094 + L1MB2 LINE L1 4756 6169 -2 378 293 114 12 chr1 65171124 65171291 -217022373 - L2 LINE L2 0 3272 3089 471 326 64 17 chr1 65171600 65171836 -217021828 + MIR SINE MIR 4 250 -12 280 291 51 13 chr1 65171877 65171956 -217021708 - L2 LINE L2 -44 3269 3188 189 0 0 0 chr1 65172032 65172053 -217021611 + (A)n Simple_repeat Simple_repeat 1 21 0 439 270 9 18 chr1 65172201 65172312 -217021352 - MIR3 SINE MIR -13 195 86 309 51 0 0 chr1 65172392 65172431 -217021233 + (TG)n Simple_repeat Simple_repeat 2 40 0 636 282 64 9 chr1 65172736 65172956 -217020708 + MIR SINE MIR 16 247 -15 2175 132 0 3 chr1 65173207 65173517 -217020147 + AluSg SINE Alu 1 309 -1 195 204 0 0 chr1 65175443 65175487 -217018177 + GA-rich Low_complexity Low_complexity 2 45 0 335 316 72 6 chr1 65175734 65175872 -217017792 - MIR SINE MIR -62 146 4 456 292 70 29 chr1 65176029 65176200 -217017464 + MIR SINE MIR 20 197 -65 231 251 108 5 chr1 65176839 65176951 -217016713 - MIR3 SINE MIR -119 89 3 423 0 0 0 chr1 65177579 65177626 -217016038 + (CA)n Simple_repeat Simple_repeat 2 48 0 1987 121 11 4 chr1 65177904 65178210 -217015454 + AluSg SINE Alu 1 308 0 290 354 150 30 chr1 65178252 65178645 -217015019 - L2 LINE L2 -1 3271 2832 196 387 0 11 chr1 65178740 65178833 -217014831 + MIR SINE MIR 1 92 -170 676 65 11 0 chr1 65178845 65178938 -217014726 - L1MA8 LINE L1 -4 6287 6194 414 171 95 29 chr1 65178946 65179051 -217014613 + MIR SINE MIR 81 192 -70 1322 166 140 19 chr1 65179223 65179494 -217014170 + AluJb SINE Alu 1 304 -8 1070 205 47 19 chr1 65179501 65179716 -217013948 + MER58A DNA MER1_type 4 224 0 435 182 127 0 chr1 65180535 65180645 -217013019 + MER103 DNA DNA 36 159 -7 2146 120 0 3 chr1 65180837 65181138 -217012526 - AluSx SINE Alu -12 300 1 246 314 105 0 chr1 65181283 65181388 -217012276 - MIR SINE MIR -6 256 141 760 194 106 50 chr1 65181388 65181568 -217012096 + MER3 DNA MER1_type 20 209 0 203 61 30 0 chr1 65182185 65182218 -217011446 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 630 246 42 30 chr1 65182405 65182572 -217011092 + MIR SINE MIR 8 176 -86 268 294 267 30 chr1 65183027 65183330 -217010334 - L3 LINE CR1 -5 1572 1198 276 350 44 0 chr1 65183468 65183605 -217010059 - L2 LINE L2 -7 3265 3123 323 337 107 0 chr1 65183856 65184034 -217009630 - L3 LINE CR1 -744 833 637 265 362 54 29 chr1 65184111 65184390 -217009274 - L2 LINE L2 -2 3270 2985 299 343 29 36 chr1 65185180 65185320 -217008344 + L2 LINE L2 3128 3266 -6 512 200 0 0 chr1 65185640 65185730 -217007934 - MIR SINE MIR -61 147 58 475 291 55 20 chr1 65187581 65187780 -217005884 - MIR3 SINE MIR -2 206 1 1286 268 101 33 chr1 65189020 65189506 -217004158 + MLT1K LTR MaLR 59 577 -11 1017 170 36 21 chr1 65189751 65189945 -217003719 - MER3 DNA MER1_type -4 205 9 248 335 66 0 chr1 65190292 65190444 -217003220 - MIR SINE MIR -1 261 100 394 281 221 17 chr1 65191494 65191729 -217001935 + MER102b DNA MER1_type 50 332 -9 222 289 26 13 chr1 65192134 65192210 -217001454 + L2 LINE L2 3160 3236 -36 182 114 0 45 chr1 65192567 65192611 -217001053 + (CAT)n Simple_repeat Simple_repeat 1 42 0 373 282 173 0 chr1 65193509 65193665 -216999999 - MIR SINE MIR -26 236 54 243 282 32 57 chr1 65193653 65193747 -216999917 + MIR SINE MIR 117 209 -53 * 381 22 0 0 chr1 65193747 65193793 -216999871 + (TG)n Simple_repeat Simple_repeat 2 47 0 243 282 32 57 chr1 65193793 65193822 -216999842 + MIR SINE MIR 209 237 -25 229 257 40 89 chr1 65193969 65194070 -216999594 + MIR SINE MIR 57 152 -56 1086 224 52 46 chr1 65194204 65194530 -216999134 - MER46C DNA MER2_type -2 336 9 542 264 66 74 chr1 65194784 65195026 -216998638 + LTR33A LTR ERVL 3 242 -281 300 254 105 9 chr1 65195199 65195313 -216998351 + LTR33A LTR ERVL 348 472 -51 2330 105 0 0 chr1 65195508 65195813 -216997851 + AluSg SINE Alu 1 305 -5 276 268 130 16 chr1 65197299 65197422 -216996242 + MIR3 SINE MIR 9 145 -63 15800 128 23 31 chr1 65197917 65199508 -216994156 + Tigger1 DNA MER2_type 1 1568 -850 2393 84 0 10 chr1 65199508 65199817 -216993847 + AluY SINE Alu 1 306 -5 15800 128 23 31 chr1 65199817 65200662 -216993002 + Tigger1 DNA MER2_type 1568 2418 0 581 264 49 54 chr1 65200776 65201181 -216992483 + L1M4 LINE L1 4357 4759 -1387 362 74 19 0 chr1 65201289 65201343 -216992321 + (CA)n Simple_repeat Simple_repeat 1 55 0 475 227 28 57 chr1 65201348 65201524 -216992140 + L1M4 LINE L1 4995 5165 -981 200 222 0 37 chr1 65202813 65202867 -216990797 - L2 LINE L2 0 3313 3262 853 78 78 0 chr1 65203297 65203426 -216990238 + MER85 DNA T2_type 1 139 0 331 324 116 68 chr1 65203893 65204229 -216989435 + L2 LINE L2 2916 3267 -5 219 292 11 0 chr1 65204339 65204428 -216989236 + GA-rich Low_complexity Low_complexity 3 92 0 27 0 0 0 chr1 65204907 65204934 -216988730 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 65205652 65205674 -216987990 + AT_rich Low_complexity Low_complexity 1 22 0 781 223 86 45 chr1 65205832 65206052 -216987612 - MIR SINE MIR -30 232 4 1036 265 27 12 chr1 65206435 65206692 -216986972 + MIR SINE MIR 2 262 0 196 317 79 40 chr1 65206707 65206808 -216986856 - MIR SINE MIR -157 105 1 257 239 134 30 chr1 65206823 65206957 -216986707 - MIR SINE MIR -12 250 103 21 0 0 0 chr1 65210068 65210089 -216983575 + GC_rich Low_complexity Low_complexity 1 21 0 50 0 0 0 chr1 65210901 65210951 -216982713 + GC_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 65210969 65210992 -216982672 + GC_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr1 65211097 65211126 -216982538 + (CGAG)n Simple_repeat Simple_repeat 2 30 0 433 276 9 0 chr1 65213365 65213481 -216980183 - MIR SINE MIR 0 262 146 286 318 46 69 chr1 65213523 65213639 -216980025 + MIR SINE MIR 88 200 -62 2418 45 3 0 chr1 65213639 65213926 -216979738 - AluY SINE Alu -23 288 1 286 318 46 69 chr1 65213926 65213982 -216979682 + MIR SINE MIR 200 256 -6 411 317 21 42 chr1 65214008 65214150 -216979514 - L2 LINE L2 -1 3271 3133 4650 140 6 33 chr1 65214450 65214649 -216979015 - L1MA9 LINE L1 0 6312 6109 2260 105 0 0 chr1 65214649 65214944 -216978720 + AluSq SINE Alu 1 295 -18 4650 140 6 33 chr1 65214944 65215603 -216978061 - L1MA9 LINE L1 -203 6109 5477 1284 207 7 28 chr1 65215658 65215948 -216977716 - AluJo SINE Alu 0 312 29 4619 196 9 9 chr1 65215948 65217021 -216976643 - L1MA9 LINE L1 -743 5403 4378 2316 29 7 7 chr1 65217140 65217415 -216976249 - AluY SINE Alu -14 297 23 442 326 100 53 chr1 65217597 65217898 -216975766 - L2 LINE L2 -2 3270 2956 243 103 0 0 chr1 65217899 65217938 -216975726 + (A)n Simple_repeat Simple_repeat 1 39 0 2220 112 14 0 chr1 65218603 65218897 -216974767 + AluSg SINE Alu 1 298 -12 228 291 81 54 chr1 65219011 65219159 -216974505 + MLT1K LTR MaLR 11 162 -426 424 326 62 43 chr1 65219221 65219497 -216974167 + MLT1K LTR MaLR 267 547 -41 211 328 60 0 chr1 65219853 65219920 -216973744 - MIR SINE MIR -64 144 74 2360 240 70 19 chr1 65219963 65221541 -216972123 + L1ME2 LINE L1 4416 6078 -86 6176 119 51 42 chr1 65221547 65222015 -216971649 - Tigger3b DNA MER2_type -1797 1231 769 2206 132 0 0 chr1 65222015 65222325 -216971339 - AluSx SINE Alu -2 310 1 6176 119 51 42 chr1 65222325 65222881 -216970783 - Tigger3b DNA MER2_type -2259 769 192 2382 103 0 0 chr1 65222881 65223193 -216970471 - AluSx SINE Alu 0 312 1 6176 119 51 42 chr1 65223193 65223341 -216970323 - Tigger3b DNA MER2_type -2836 192 47 244 304 18 116 chr1 65223644 65223723 -216969941 + L3 LINE CR1 1372 1457 -120 2375 74 3 29 chr1 65223723 65224035 -216969629 + AluY SINE Alu 1 304 -7 244 304 18 116 chr1 65224035 65224179 -216969485 + L3 LINE CR1 1457 1573 -4 27 0 0 0 chr1 65224376 65224403 -216969261 + AT_rich Low_complexity Low_complexity 1 27 0 445 231 116 54 chr1 65224879 65225026 -216968638 + MIR3 SINE MIR 34 189 -19 364 198 0 135 chr1 65225493 65225619 -216968045 - MIR SINE MIR -70 192 84 210 167 62 0 chr1 65225768 65225816 -216967848 + MIR SINE MIR 111 161 -101 622 330 74 28 chr1 65225938 65226371 -216967293 + MLT1K LTR MaLR 118 570 -18 2572 52 7 0 chr1 65226397 65226705 -216966959 - AluY SINE Alu -1 310 1 230 219 16 0 chr1 65227497 65227561 -216966103 + GA-rich Low_complexity Low_complexity 4 68 0 576 247 77 18 chr1 65227701 65227871 -216965793 + MIR SINE MIR 41 220 -42 262 271 0 15 chr1 65228064 65228141 -216965523 - MIR SINE MIR -67 141 65 2292 95 20 0 chr1 65228194 65228498 -216965166 + AluSq SINE Alu 1 310 -3 232 287 37 103 chr1 65228609 65228745 -216964919 - L2 LINE L2 -86 3186 3060 1264 85 0 17 chr1 65229377 65229553 -216964111 + L1PA10 LINE L1 5995 6167 -1 499 259 37 9 chr1 65230193 65230301 -216963363 + MER91A DNA MER1_type 57 167 -29 348 253 30 0 chr1 65230312 65230410 -216963254 + MER91 DNA MER1_type 90 188 -2 * 372 324 83 14 chr1 65230410 65230551 -216963113 - MIR SINE MIR -58 204 54 367 269 94 35 chr1 65230662 65230833 -216962831 + MIR3 SINE MIR 3 183 -25 323 250 30 38 chr1 65230919 65231051 -216962613 + L1ME4a LINE L1 5568 5698 -423 268 188 98 54 chr1 65231550 65231662 -216962002 - L1ME LINE L1 -369 5752 5636 457 246 156 57 chr1 65231933 65232177 -216961487 + L1ME4a LINE L1 5731 5998 -123 511 316 41 6 chr1 65233988 65234159 -216959505 + L3 LINE CR1 1173 1349 -228 321 309 32 11 chr1 65234191 65234285 -216959379 + L2 LINE L2 3215 3310 -3 311 319 34 17 chr1 65234314 65234433 -216959231 + L3 LINE CR1 1449 1569 -8 211 269 104 0 chr1 65234523 65234590 -216959074 + MIR SINE MIR 36 109 -99 277 356 34 7 chr1 65234630 65234776 -216958888 + L2 LINE L2 2596 2745 -569 336 127 84 14 chr1 65234880 65234951 -216958713 + MIR SINE MIR 114 189 -73 278 313 153 65 chr1 65235001 65235465 -216958199 + L2 LINE L2 2808 3312 -1 3088 99 0 0 chr1 65235593 65236027 -216957637 - L1PA14 LINE L1 -16 6145 5712 476 227 23 11 chr1 65237228 65237404 -216956260 + CT-rich Low_complexity Low_complexity 2 179 0 278 200 160 67 chr1 65237409 65237484 -216956180 - L2 LINE L2 -17 3255 3174 208 163 23 0 chr1 65237628 65237671 -216955993 + (CCA)n Simple_repeat Simple_repeat 3 46 0 310 259 0 0 chr1 65237739 65237797 -216955867 + MIR SINE MIR 78 135 -73 469 222 34 0 chr1 65237968 65238085 -216955579 + FRAM SINE Alu 47 167 -9 188 273 91 61 chr1 65238897 65238996 -216954668 + MIR SINE MIR 23 124 -138 189 342 51 0 chr1 65239756 65239835 -216953829 - MIR SINE MIR -150 112 30 357 318 23 15 chr1 65240240 65240372 -216953292 + L2 LINE L2 3180 3312 -1 1777 180 14 3 chr1 65240572 65240867 -216952797 + AluJo SINE Alu 1 298 -14 306 87 0 0 chr1 65241432 65241478 -216952186 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr1 65242247 65242268 -216951396 + AT_rich Low_complexity Low_complexity 1 21 0 209 342 70 37 chr1 65242438 65242625 -216951039 - L2 LINE L2 -420 2894 2702 270 289 94 39 chr1 65243119 65243247 -216950417 + L2 LINE L2 3137 3271 -1 480 200 79 7 chr1 65243405 65243545 -216950119 - L1MB8 LINE L1 -124 6054 5905 2252 81 13 3 chr1 65243630 65243928 -216949736 - AluSp SINE Alu -12 301 1 251 324 27 9 chr1 65244852 65244963 -216948701 + MIR3 SINE MIR 66 178 -30 29 28 0 0 chr1 65245050 65245086 -216948578 + AT_rich Low_complexity Low_complexity 1 36 0 625 187 33 43 chr1 65245442 65245625 -216948039 - MLT1D LTR MaLR -256 211 32 637 324 83 69 chr1 65245684 65246446 -216947218 - L2 LINE L2 -98 3215 2443 241 302 88 68 chr1 65246509 65246701 -216946963 - L2 LINE L2 -190 3082 2887 219 239 93 132 chr1 65247825 65248030 -216945634 - MIR SINE MIR -13 249 53 2456 82 30 25 chr1 65248041 65248444 -216945220 + L1P4 LINE L1 5373 5777 -389 1772 176 16 3 chr1 65248451 65248820 -216944844 + AluJb SINE Alu 1 373 0 1684 196 30 5 chr1 65248823 65249196 -216944468 + L1PA16 LINE L1 5769 6150 -16 239 190 17 0 chr1 65249495 65249553 -216944111 + CT-rich Low_complexity Low_complexity 3 61 0 392 202 45 0 chr1 65251155 65251244 -216942420 + L1ME3A LINE L1 6077 6169 -1 26 88 0 0 chr1 65251521 65251589 -216942075 + AT_rich Low_complexity Low_complexity 1 68 0 26 0 0 0 chr1 65251852 65251878 -216941786 + AT_rich Low_complexity Low_complexity 1 26 0 2231 112 6 16 chr1 65252236 65252548 -216941116 - AluSp SINE Alu -4 309 1 1255 171 0 0 chr1 65252549 65252760 -216940904 - Tigger3(Golem) DNA MER2_type -2818 211 1 1922 115 0 14 chr1 65254231 65254518 -216939146 + AluY SINE Alu 20 302 -9 191 280 32 54 chr1 65254739 65254832 -216938832 - MIR SINE MIR -44 218 128 26 50 0 0 chr1 65255139 65255179 -216938485 + AT_rich Low_complexity Low_complexity 1 40 0 1990 174 15 20 chr1 65255652 65256055 -216937609 + MLT2C2 LTR ERVL 3 403 -61 216 67 0 0 chr1 65256098 65256128 -216937536 + (TG)n Simple_repeat Simple_repeat 1 30 0 1806 152 58 22 chr1 65256622 65256984 -216936680 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr1 65257056 65257084 -216936580 + AT_rich Low_complexity Low_complexity 1 28 0 1230 254 69 14 chr1 65257855 65258362 -216935302 - L1M4 LINE L1 -1792 4354 3820 321 284 27 104 chr1 65258383 65258605 -216935059 - L1MEc LINE L1 -4426 1970 1766 2011 134 6 26 chr1 65258748 65259061 -216934603 - AluSx SINE Alu -5 307 1 2042 131 0 0 chr1 65259071 65259379 -216934285 - AluSg SINE Alu 0 308 1 2833 131 41 8 chr1 65259415 65259905 -216933759 - MER4E LTR ERV1 0 779 274 380 146 0 67 chr1 65261009 65261098 -216932566 + L1M3 LINE L1 5740 5822 -349 2458 74 0 0 chr1 65261101 65261400 -216932264 + AluSx SINE Alu 1 299 -13 684 258 52 1 chr1 65261496 65261710 -216931954 + MLT1G1 LTR MaLR 1 206 -389 2593 23 7 3 chr1 65261713 65262016 -216931648 - AluY SINE Alu -7 304 1 4251 19 0 0 chr1 65262016 65262836 -216930828 - L1P1 LINE L1 -465 5690 4871 492 251 0 68 chr1 65262836 65263027 -216930637 - BaEV-int LTR ERV1 -1327 5322 5145 5692 123 2 3 chr1 65263165 65264044 -216929620 + HERVL LTR ERVL 382 1259 -4395 6850 202 57 32 chr1 65264052 65264497 -216929167 - L1P LINE L1 -1393 4753 4321 2278 122 37 8 chr1 65264497 65264851 -216928813 + THE1B LTR MaLR 1 364 0 6850 202 57 32 chr1 65264851 65266260 -216927404 - L1P LINE L1 -1825 4321 2853 1938 137 20 0 chr1 65266512 65266804 -216926860 - AluSq SINE Alu -15 298 1 9990 149 19 11 chr1 65269280 65269628 -216924036 + HERVL LTR ERVL 1463 1807 -3536 1769 158 143 13 chr1 65269628 65270007 -216923657 + MSTA LTR MaLR 1 428 0 9990 149 19 11 chr1 65270007 65271352 -216922312 + HERVL LTR ERVL 1807 3170 -2173 306 284 17 52 chr1 65271605 65271721 -216921943 + MIR SINE MIR 84 195 -67 225 0 0 0 chr1 65271969 65271994 -216921670 + (T)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr1 65272401 65272427 -216921237 + AT_rich Low_complexity Low_complexity 1 26 0 2352 92 3 0 chr1 65272640 65272934 -216920730 - AluSx SINE Alu -17 295 1 262 271 0 15 chr1 65272987 65273064 -216920600 + MIR SINE MIR 65 141 -67 634 238 64 17 chr1 65273257 65273429 -216920235 - MIR SINE MIR -42 220 41 226 323 40 57 chr1 65273558 65273682 -216919982 - L2 LINE L2 -183 3089 2968 243 213 110 118 chr1 65273822 65273958 -216919706 + MIR SINE MIR 38 172 -36 551 201 69 0 chr1 65274401 65274560 -216919104 + L1M4 LINE L1 3832 4001 -2145 585 245 122 5 chr1 65275912 65276076 -216917588 + MER5A DNA MER1_type 4 189 0 256 259 52 43 chr1 65276079 65276195 -216917469 + L1MEd LINE L1 31 147 -5972 22 35 0 0 chr1 65276599 65276628 -216917036 + AT_rich Low_complexity Low_complexity 1 29 0 9330 135 50 10 chr1 65276923 65278612 -216915052 - Tigger1 DNA MER2_type -1 2417 662 5117 68 33 12 chr1 65278749 65279480 -216914184 + LTR17 LTR ERV1 35 780 0 314 291 79 31 chr1 65279480 65279607 -216914057 + MIR3 SINE MIR 71 203 -5 230 333 44 11 chr1 65281692 65281782 -216911882 + MIR SINE MIR 30 122 -140 2197 211 155 105 chr1 65281811 65282380 -216911284 - MLT1E2 LTR MaLR -1 625 57 331 382 18 12 chr1 65282414 65282579 -216911085 - MER5A DNA MER1_type -23 166 1 433 289 30 15 chr1 65282416 65282551 -216911113 + MER5B DNA MER1_type 26 162 -16 325 293 231 7 chr1 65282675 65282822 -216910842 + MER5A DNA MER1_type 9 188 -1 2350 108 73 14 chr1 65283721 65284065 -216909599 + THE1B LTR MaLR 1 364 0 331 287 74 25 chr1 65284323 65284445 -216909219 - MIR3 SINE MIR -67 141 14 1793 179 70 32 chr1 65284636 65285076 -216908588 + LTR2B LTR ERV1 34 490 0 452 252 221 31 chr1 65285549 65285803 -216907861 - L3 LINE CR1 -35 1542 1241 249 33 0 0 chr1 65285834 65285864 -216907800 + (CAT)n Simple_repeat Simple_repeat 3 32 0 317 269 37 139 chr1 65285951 65286186 -216907478 + L2 LINE L2 2940 3141 -172 1566 216 26 22 chr1 65286186 65286602 -216907062 + LTR52 LTR ERVL 1 418 -3 317 269 37 139 chr1 65286602 65286660 -216907004 + L2 LINE L2 3141 3203 -110 628 217 92 55 chr1 65286800 65287021 -216906643 - MIR SINE MIR -28 234 2 245 179 0 0 chr1 65287496 65287552 -216906112 - L1ME4a LINE L1 -6 6115 6060 281 308 53 20 chr1 65287662 65287844 -216905820 + MIR SINE MIR 46 232 -30 257 398 91 22 chr1 65288343 65288574 -216905090 - L2 LINE L2 -80 3192 2946 190 265 44 44 chr1 65289146 65289214 -216904450 - L2 LINE L2 -561 2753 2686 544 300 74 70 chr1 65289218 65289474 -216904190 + HAL1 LINE L1 1 255 -2252 2318 89 0 0 chr1 65289474 65289766 -216903898 + AluSx SINE Alu 1 292 -20 544 300 74 70 chr1 65289766 65290063 -216903601 + HAL1 LINE L1 255 556 -1951 1029 64 7 7 chr1 65290098 65290239 -216903425 - THE1B LTR MaLR 0 364 224 254 54 0 0 chr1 65290239 65290276 -216903388 + HERVL-A2 LTR ERVL 5618 5654 0 2003 172 38 31 chr1 65290276 65290823 -216902841 + MLT2A2 LTR ERVL 1 554 0 1384 264 79 100 chr1 65291039 65291286 -216902378 + HAL1 LINE L1 776 1027 -1480 2140 142 0 10 chr1 65291286 65291597 -216902067 + AluSx SINE Alu 1 308 -4 1384 264 79 100 chr1 65291597 65292043 -216901621 + HAL1 LINE L1 1027 1481 -1026 1272 150 92 116 chr1 65292043 65292502 -216901162 - LTR7 LTR ERV1 -2 448 1 1384 264 79 100 chr1 65292502 65293548 -216900116 + HAL1 LINE L1 1481 2479 -28 2346 93 0 0 chr1 65293582 65293882 -216899782 - AluSg SINE Alu -10 300 1 235 273 0 0 chr1 65294310 65294354 -216899310 - L2 LINE L2 -69 3203 3160 300 327 10 0 chr1 65294601 65294702 -216898962 - MIR SINE MIR -55 207 106 193 359 86 26 chr1 65295098 65295215 -216898449 - MIR3 SINE MIR -82 126 3 1642 257 94 62 chr1 65295581 65296284 -216897380 + L1MEc LINE L1 801 1480 -4735 387 41 0 0 chr1 65296284 65296333 -216897331 + (CA)n Simple_repeat Simple_repeat 2 50 0 1642 257 94 62 chr1 65296333 65297363 -216896301 + L1MEc LINE L1 1480 2541 -3674 225 399 51 6 chr1 65297611 65297769 -216895895 - L2 LINE L2 -22 3250 3086 2410 118 62 21 chr1 65298698 65299130 -216894534 + LTR7 LTR ERV1 1 450 0 1701 173 54 23 chr1 65299364 65299752 -216893912 + MER63B DNA MER1_type 1 400 -36 222 37 0 0 chr1 65299967 65299994 -216893670 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 811 257 22 35 chr1 65300485 65300738 -216892926 - MIR SINE MIR -1 261 14 300 53 0 0 chr1 65301186 65301224 -216892440 + (TA)n Simple_repeat Simple_repeat 1 38 0 1000 298 86 33 chr1 65302362 65302998 -216890666 + L2 LINE L2 2639 3313 0 2165 99 27 0 chr1 65303114 65303406 -216890258 - AluSc SINE Alu -9 300 1 204 241 37 0 chr1 65304544 65304598 -216889066 - L2 LINE L2 -33 3239 3184 1034 216 52 11 chr1 65304603 65304871 -216888793 + MER33 DNA MER1_type 46 324 0 358 266 34 62 chr1 65304882 65305059 -216888605 - MER5B DNA MER1_type -3 175 4 288 286 156 26 chr1 65305091 65305133 -216888531 - MER5B DNA MER1_type 0 178 143 180 0 0 0 chr1 65305133 65305153 -216888511 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 288 286 156 26 chr1 65305153 65305264 -216888400 - MER5B DNA MER1_type -35 143 5 181 271 0 0 chr1 65305316 65305364 -216888300 + L2 LINE L2 3179 3226 -87 2297 152 91 0 chr1 65305393 65305789 -216887875 - MSTB1 LTR MaLR 0 432 1 311 238 119 20 chr1 65306329 65306430 -216887234 + MIR SINE MIR 39 149 -59 256 271 14 0 chr1 65306528 65306598 -216887066 - L2 LINE L2 -13 3259 3189 6024 116 3 25 chr1 65307817 65308768 -216884896 + L1MA4A LINE L1 5368 6297 -6 2335 76 13 3 chr1 65308769 65309071 -216884593 - AluY SINE Alu -6 305 1 258 250 15 15 chr1 65309507 65309575 -216884089 - MIR SINE MIR -148 114 47 215 310 0 0 chr1 65309684 65309742 -216883922 - MIR SINE MIR -114 148 91 196 218 161 35 chr1 65310136 65310223 -216883441 - L2 LINE L2 -303 2969 2872 2037 198 116 38 chr1 65310363 65310862 -216882802 + MLT1F LTR MaLR 5 542 0 216 345 35 18 chr1 65310879 65310992 -216882672 - MIR SINE MIR -147 115 1 1613 184 3 35 chr1 65311462 65311778 -216881886 + AluJo SINE Alu 1 306 -6 210 259 35 17 chr1 65312002 65312060 -216881604 - MIR SINE MIR -115 147 89 616 276 89 49 chr1 65312131 65312242 -216881422 + L2 LINE L2 2607 2712 -601 2629 117 8 13 chr1 65312242 65312619 -216881045 + THE1C LTR MaLR 1 375 0 616 276 89 49 chr1 65312619 65313050 -216880614 + L2 LINE L2 2712 3244 -69 554 246 9 9 chr1 65313051 65313165 -216880499 - MER81 DNA DNA 0 114 1 188 298 202 35 chr1 65313415 65313529 -216880135 + L2 LINE L2 3136 3268 -4 306 148 0 0 chr1 65313705 65313759 -216879905 + (TG)n Simple_repeat Simple_repeat 2 55 0 930 232 45 5 chr1 65314046 65314244 -216879420 + MIR SINE MIR 7 212 -50 255 254 36 0 chr1 65314290 65314345 -216879319 + Tigger3(Golem) DNA MER2_type 1 57 -2972 826 178 0 0 chr1 65314356 65314485 -216879179 + Tigger3(Golem) DNA MER2_type 2910 3038 0 1220 140 153 4 chr1 65315308 65315536 -216878128 + L1MD3 LINE L1 7728 7989 -6 749 293 32 28 chr1 65315790 65316039 -216877625 - MIR SINE MIR -2 260 11 201 286 36 36 chr1 65316359 65316443 -216877221 + L3 LINE CR1 1305 1388 -189 692 262 0 6 chr1 65316459 65316631 -216877033 - MIR SINE MIR -1 261 91 267 326 50 21 chr1 65316683 65316824 -216876840 + L3 LINE CR1 1405 1549 -28 267 295 105 32 chr1 65316886 65316981 -216876683 + L2 LINE L2 3154 3255 -17 286 227 185 17 chr1 65317759 65317878 -216875786 + MIR SINE MIR 110 248 -14 262 263 168 32 chr1 65317946 65318041 -216875623 + L3 LINE CR1 1461 1568 -9 453 289 77 46 chr1 65318507 65318701 -216874963 - MIR SINE MIR -3 259 60 579 329 49 67 chr1 65319921 65320418 -216873246 - L2 LINE L2 -19 3253 2769 1044 102 23 6 chr1 65320966 65321143 -216872521 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 609 179 0 18 chr1 65321222 65321334 -216872330 + FRAM SINE Alu 59 168 -8 292 339 101 20 chr1 65321366 65321811 -216871853 - L2 LINE L2 -1305 2009 1529 457 304 71 33 chr1 65321919 65322103 -216871561 + MIR SINE MIR 56 246 -16 2388 94 0 0 chr1 65322664 65322971 -216870693 - AluSc SINE Alu -2 307 1 297 267 0 0 chr1 65322977 65323052 -216870612 + CT-rich Low_complexity Low_complexity 1 75 0 230 376 64 9 chr1 65323297 65323406 -216870258 - MIR SINE MIR -124 138 24 4252 126 25 6 chr1 65323740 65324661 -216869003 - L1PB1 LINE L1 -320 5831 4885 3116 76 10 0 chr1 65324662 65325058 -216868606 + MLT2A1 LTR ERVL 1 400 -44 213 175 0 0 chr1 65325060 65325100 -216868564 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 393 91 0 0 chr1 65325107 65325162 -216868502 + MLT2A1 LTR ERVL 390 444 0 34959 66 4 14 chr1 65325163 65329573 -216864091 + HERVL-A1 LTR ERVL 2 4366 -1288 15721 74 6 9 chr1 65329721 65330830 -216862834 + HERVL LTR ERVL 3406 4506 -1148 2151 125 7 0 chr1 65330830 65331134 -216862530 + AluSx SINE Alu 1 306 -6 15721 74 6 9 chr1 65331134 65332046 -216861618 + HERVL LTR ERVL 4506 5420 -234 42435 60 4 1 chr1 65332052 65337710 -216855954 + L1P2 LINE L1 11 5690 -464 2557 23 7 10 chr1 65337710 65338010 -216855654 + AluY SINE Alu 1 299 -12 207 323 87 51 chr1 65338405 65338600 -216855064 - L2 LINE L2 -219 3053 2852 376 297 0 43 chr1 65338800 65338938 -216854726 + MIR SINE MIR 21 152 -110 657 168 99 43 chr1 65339016 65339177 -216854487 + MER3 DNA MER1_type 6 128 -81 480 272 26 138 chr1 65339332 65339681 -216853983 + L2 LINE L2 2870 3257 -15 249 33 0 0 chr1 65339681 65339711 -216853953 + (TG)n Simple_repeat Simple_repeat 1 30 0 2489 152 73 11 chr1 65339711 65340165 -216853499 - L1MB3 LINE L1 -14 6169 5688 480 272 26 138 chr1 65340165 65340233 -216853431 + L2 LINE L2 3167 3241 -31 234 0 0 0 chr1 65340327 65340353 -216853311 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 327 196 14 chr1 65341505 65341719 -216851945 + L3 LINE CR1 697 949 -628 414 211 41 48 chr1 65341763 65341941 -216851723 - HsTC2 DNA Tc2 -2 1896 1716 1303 242 46 3 chr1 65341941 65342247 -216851417 - HsTC2 DNA Tc2 -1579 319 1 220 324 20 78 chr1 65342247 65342349 -216851315 + L3 LINE CR1 1004 1099 -478 249 341 77 0 chr1 65342477 65342568 -216851096 + L2 LINE L2 3197 3294 -19 217 308 205 22 chr1 65342848 65343033 -216850631 + MIR SINE MIR 31 249 -13 198 243 157 14 chr1 65343155 65343225 -216850439 - MIR SINE MIR -87 121 42 451 289 19 50 chr1 65343250 65343409 -216850255 - MIR3 SINE MIR -17 191 38 1030 275 64 67 chr1 65343465 65343969 -216849695 + L2 LINE L2 2798 3306 -7 482 389 52 26 chr1 65343954 65344260 -216849404 - L2 LINE L2 -16 3256 2943 * 1667 327 149 38 chr1 65344333 65345536 -216848128 - L2 LINE L2 -498 2816 1389 2063 98 7 4 chr1 65345536 65345835 -216847829 - AluSc SINE Alu 0 300 1 1667 327 149 38 chr1 65345835 65346232 -216847432 - L2 LINE L2 -1925 1389 1037 275 370 74 7 chr1 65346390 65346525 -216847139 + L2 LINE L2 3111 3254 -18 921 240 123 91 chr1 65347557 65348052 -216845612 + MLT1H LTR MaLR 4 514 -35 307 335 147 0 chr1 65348105 65348275 -216845389 + L1ME4a LINE L1 5725 5919 -202 2493 52 7 3 chr1 65348600 65348908 -216844756 + AluY SINE Alu 1 309 -2 577 261 24 38 chr1 65349006 65349217 -216844447 + L2 LINE L2 3105 3312 -1 228 286 80 18 chr1 65349317 65349429 -216844235 + MIR SINE MIR 79 197 -65 443 292 125 12 chr1 65349493 65349661 -216844003 - MIR SINE MIR -44 218 32 281 369 84 19 chr1 65350149 65350412 -216843252 + L2 LINE L2 2810 3089 -183 305 193 181 0 chr1 65350493 65350576 -216843088 + MIR SINE MIR 138 235 -27 3980 146 124 91 chr1 65350797 65351187 -216842477 + L1MC3 LINE L1 6736 7112 -673 263 274 0 0 chr1 65351187 65351249 -216842415 + MLT1F1 LTR MaLR 50 111 -456 3980 146 124 91 chr1 65351249 65351808 -216841856 + L1MC3 LINE L1 7112 7779 -6 307 333 27 18 chr1 65351886 65351997 -216841667 - MIR SINE MIR -126 136 25 1833 166 3 3 chr1 65352231 65352532 -216841132 - AluJb SINE Alu -11 301 1 613 375 71 26 chr1 65353225 65353870 -216839794 + L2 LINE L2 2291 2964 -350 611 281 27 11 chr1 65354466 65354651 -216839013 - MER5A DNA MER1_type 0 189 2 511 239 15 37 chr1 65354818 65354952 -216838712 + L2 LINE L2 3183 3313 0 1270 170 27 27 chr1 65355062 65355286 -216838378 - MER58A DNA MER1_type 0 224 1 211 242 20 0 chr1 65355392 65355491 -216838173 + (TA)n Simple_repeat Simple_repeat 1 101 0 372 211 0 34 chr1 65355508 65355683 -216837981 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 280 279 310 0 chr1 65355685 65355814 -216837850 + MIR SINE MIR 81 249 -13 198 277 129 40 chr1 65355953 65356054 -216837610 + MIR3 SINE MIR 9 118 -90 * 398 295 115 51 chr1 65356038 65356526 -216837138 + L2 LINE L2 1292 1810 -1504 1291 255 179 17 chr1 65356697 65357329 -216836335 + L2 LINE L2 1806 2539 -775 964 156 0 13 chr1 65357348 65357502 -216836162 - AluJb SINE Alu -25 287 136 309 217 54 11 chr1 65357541 65357633 -216836031 + L2 LINE L2 1612 1707 -1607 646 270 144 67 chr1 65357639 65358304 -216835360 + L2 LINE L2 2595 3313 0 619 280 56 24 chr1 65358495 65358745 -216834919 - MIR SINE MIR 0 262 5 274 304 163 15 chr1 65358762 65358897 -216834767 + L2 LINE L2 3116 3270 -2 280 289 135 0 chr1 65359580 65359684 -216833980 - MIR SINE MIR -109 153 36 475 313 31 58 chr1 65359738 65360032 -216833632 + L2 LINE L2 2863 3148 -165 5146 139 38 19 chr1 65360117 65361031 -216832633 - L1MA8 LINE L1 -7 6284 5353 534 273 16 0 chr1 65361033 65361161 -216832503 + L2 LINE L2 3184 3313 0 901 290 5 0 chr1 65361287 65361530 -216832134 + MIR SINE MIR 19 262 0 312 143 0 0 chr1 65361662 65361718 -216831946 + (GAAAA)n Simple_repeat Simple_repeat 3 58 0 380 353 33 0 chr1 65362266 65362388 -216831276 - L2 LINE L2 -1 3271 3146 815 164 0 0 chr1 65363707 65363841 -216829823 - FRAM SINE Alu 0 176 43 234 182 36 36 chr1 65363985 65364040 -216829624 + L2 LINE L2 3218 3272 0 225 220 127 93 chr1 65364418 65364568 -216829096 - L3 LINE CR1 -4 1573 1419 1878 41 5 0 chr1 65364807 65365028 -216828636 - L1PA5 LINE L1 -9 6145 5924 2327 89 0 29 chr1 65365478 65365794 -216827870 - AluSg SINE Alu -3 307 1 208 98 49 0 chr1 65366329 65366370 -216827294 + (TA)n Simple_repeat Simple_repeat 1 43 0 1248 233 79 97 chr1 65366378 65366766 -216826898 - MLT1G1 LTR MaLR 0 595 220 2646 30 3 0 chr1 65366766 65367068 -216826596 + AluY SINE Alu 1 303 -8 1248 233 79 97 chr1 65367068 65367285 -216826379 - MLT1G1 LTR MaLR -375 220 1 2205 131 0 0 chr1 65367381 65367679 -216825985 - AluSx SINE Alu -14 298 1 310 250 60 0 chr1 65367692 65367776 -216825888 - MIR SINE MIR -76 186 98 609 262 14 7 chr1 65367985 65368130 -216825534 + MER5B DNA MER1_type 2 147 -31 2240 100 0 0 chr1 65368444 65368725 -216824939 + AluSx SINE Alu 16 296 -16 26 0 0 0 chr1 65368938 65368964 -216824700 + AT_rich Low_complexity Low_complexity 1 26 0 261 57 0 0 chr1 65369372 65369407 -216824257 + (A)n Simple_repeat Simple_repeat 1 35 0 366 259 17 52 chr1 65369646 65369762 -216823902 - MIR SINE MIR -67 195 84 237 239 282 0 chr1 65369915 65370032 -216823632 + L1ME4a LINE L1 5848 5997 -124 2449 125 36 22 chr1 65370113 65370472 -216823192 + THE1B LTR MaLR 1 364 0 466 101 0 79 chr1 65370486 65370575 -216823089 - AluJ/FRAM SINE Alu 0 312 231 760 270 225 39 chr1 65370724 65371667 -216821997 - L2 LINE L2 -34 3279 2135 301 282 42 28 chr1 65371848 65371986 -216821678 + MIR SINE MIR 37 173 -35 508 288 67 62 chr1 65372158 65372385 -216821279 + MIR SINE MIR 24 250 -12 321 306 99 30 chr1 65372449 65372681 -216820983 + MIR SINE MIR 2 249 -13 412 82 0 0 chr1 65373787 65373848 -216819816 + L1MA1 LINE L1 6242 6302 0 1439 146 0 0 chr1 65374680 65374893 -216818771 + Tigger3(Golem) DNA MER2_type 2816 3028 -1 350 289 30 0 chr1 65374912 65375047 -216818617 - L1ME LINE L1 -302 5819 5681 2238 90 7 3 chr1 65375192 65375493 -216818171 + AluY SINE Alu 1 302 -9 2084 103 4 0 chr1 65375502 65375775 -216817889 + AluSp SINE Alu 38 311 -2 265 317 96 3 chr1 65375836 65375963 -216817701 + MIR SINE MIR 56 190 -64 253 287 54 7 chr1 65376080 65376200 -216817464 + MIR SINE MIR 43 165 -86 1964 189 5 47 chr1 65376928 65377309 -216816355 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr1 65377446 65377477 -216816187 + AT_rich Low_complexity Low_complexity 1 31 0 236 291 60 35 chr1 65378064 65378209 -216815455 + MIR SINE MIR 17 154 -62 2370 67 7 7 chr1 65378217 65378516 -216815148 + AluY SINE Alu 1 299 -12 258 338 47 34 chr1 65378911 65379059 -216814605 - L2 LINE L2 -219 3053 2904 376 297 0 43 chr1 65379306 65379444 -216814220 + MIR SINE MIR 21 152 -110 657 168 99 43 chr1 65379522 65379683 -216813981 + MER3 DNA MER1_type 6 128 -81 480 272 26 138 chr1 65379838 65380187 -216813477 + L2 LINE L2 2870 3257 -15 249 33 0 0 chr1 65380187 65380217 -216813447 + (TG)n Simple_repeat Simple_repeat 1 30 0 2489 152 73 11 chr1 65380217 65380671 -216812993 - L1MB3 LINE L1 -14 6169 5688 480 272 26 138 chr1 65380671 65380739 -216812925 + L2 LINE L2 3167 3241 -31 234 0 0 0 chr1 65380833 65380859 -216812805 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 327 196 14 chr1 65382012 65382226 -216811438 + L3 LINE CR1 697 949 -628 414 211 41 48 chr1 65382270 65382448 -216811216 - HsTC2 DNA Tc2 -2 1896 1716 1303 242 46 3 chr1 65382448 65382754 -216810910 - HsTC2 DNA Tc2 -1579 319 1 220 324 20 78 chr1 65382754 65382856 -216810808 + L3 LINE CR1 1004 1099 -478 249 341 77 0 chr1 65382984 65383075 -216810589 + L2 LINE L2 3197 3294 -19 217 308 205 22 chr1 65383355 65383540 -216810124 + MIR SINE MIR 31 249 -13 2022 126 0 54 chr1 65384696 65385013 -216808651 + AluSx SINE Alu 1 300 -12 221 314 0 0 chr1 65385085 65385155 -216808509 + MIR SINE MIR 156 225 -37 221 281 0 16 chr1 65385381 65385445 -216808219 - MIR SINE MIR -188 74 12 247 276 69 23 chr1 65385492 65385579 -216808085 + L2 LINE L2 3144 3234 -38 252 59 0 0 chr1 65385590 65385624 -216808040 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2266 119 0 3 chr1 65385661 65385972 -216807692 + AluSq SINE Alu 1 310 -3 27 0 0 0 chr1 65386165 65386192 -216807472 + AT_rich Low_complexity Low_complexity 1 27 0 278 339 18 107 chr1 65386312 65386536 -216807128 - L2 LINE L2 -16 3256 3053 798 301 4 13 chr1 65386558 65386797 -216806867 + MIR SINE MIR 12 248 -14 493 227 25 158 chr1 65386931 65387209 -216806455 + MER112 DNA MER1_type 18 258 -2 202 387 83 24 chr1 65387300 65387468 -216806196 - L2 LINE L2 -460 2854 2677 1940 31 9 0 chr1 65387628 65387852 -216805812 - L1PA5 LINE L1 -5 6149 5924 2327 89 0 29 chr1 65388302 65388618 -216805046 - AluSg SINE Alu -3 307 1 208 98 49 0 chr1 65389153 65389194 -216804470 + (TA)n Simple_repeat Simple_repeat 1 43 0 683 277 119 23 chr1 65389202 65389586 -216804078 - MLT1G1 LTR MaLR 0 595 174 2395 73 0 6 chr1 65389590 65389903 -216803761 + AluY SINE Alu 1 311 0 1228 181 0 0 chr1 65389965 65390164 -216803500 + MLT1B LTR MaLR 192 390 0 1474 253 68 50 chr1 65390180 65390741 -216802923 - L2 LINE L2 -554 2760 2190 247 342 111 42 chr1 65391016 65391422 -216802242 - L2 LINE L2 -35 3237 2804 284 304 85 13 chr1 65391656 65391880 -216801784 + L1ME4a LINE L1 5732 5971 -150 227 323 155 26 chr1 65392477 65392632 -216801032 - L2 LINE L2 -256 3016 2842 238 358 37 0 chr1 65393239 65393373 -216800291 - L2 LINE L2 -558 2756 2618 352 236 87 71 chr1 65393420 65393547 -216800117 - L2 LINE L2 -2 3270 3142 428 303 16 0 chr1 65393914 65394036 -216799628 + MIR3 SINE MIR 77 200 -8 284 218 157 95 chr1 65394150 65394297 -216799367 - MIR SINE MIR -42 220 65 269 213 107 0 chr1 65394855 65394930 -216798734 + MIR SINE MIR 115 197 -65 2115 91 0 21 chr1 65395142 65395429 -216798235 - AluY SINE Alu 0 311 31 368 336 34 0 chr1 65395709 65395828 -216797836 + MIR SINE MIR 46 168 -94 256 196 0 20 chr1 65396690 65396741 -216796923 - L2 LINE L2 -13 3300 3251 239 285 49 15 chr1 65397683 65397816 -216795848 - MIR SINE MIR -65 143 15 7078 37 0 27 chr1 65398316 65398672 -216794992 + L1PA5 LINE L1 5336 5700 -454 2551 24 7 3 chr1 65398672 65398970 -216794694 + AluY SINE Alu 1 299 -12 7078 37 0 27 chr1 65398970 65399454 -216794210 + L1PA5 LINE L1 5700 6153 -1 2054 40 0 0 chr1 65399454 65399701 -216793963 + HERVL-A1 LTR ERVL 5408 5654 0 3057 106 2 12 chr1 65399701 65400127 -216793537 + MLT2A1 LTR ERVL 1 422 -22 3886 180 5 37 chr1 65400136 65400969 -216792695 - L1 LINE L1 -1258 4888 4083 182 260 27 68 chr1 65401450 65401523 -216792141 + MIR3 SINE MIR 1 70 -138 562 262 81 6 chr1 65401906 65402078 -216791586 + MIR SINE MIR 10 194 -68 1122 214 40 0 chr1 65402111 65402335 -216791329 + MIR SINE MIR 18 250 -12 2485 169 54 5 chr1 65402350 65402758 -216790906 - MSTA LTR MaLR 0 428 1 1761 171 3 16 chr1 65402777 65403087 -216790577 - AluJo SINE Alu -6 306 1 228 300 50 0 chr1 65403502 65403582 -216790082 + L2 LINE L2 3230 3313 0 320 328 162 10 chr1 65404088 65404286 -216789378 - MIR SINE MIR -10 252 25 186 261 22 0 chr1 65404851 65404897 -216788767 + MIR SINE MIR 78 124 -138 262 286 64 57 chr1 65405301 65405441 -216788223 - MIR3 SINE MIR -64 144 4 366 284 150 0 chr1 65405453 65405580 -216788084 - L2 LINE L2 0 3313 3168 529 178 19 28 chr1 65405603 65405710 -216787954 + MLT1C LTR MaLR 3 108 -359 1416 194 67 39 chr1 65405710 65406066 -216787598 + MER47A DNA MER2_type 1 366 0 * 1465 198 77 28 chr1 65406066 65406414 -216787250 + MLT1C LTR MaLR 103 467 0 346 349 55 7 chr1 65406945 65407091 -216786573 - MIR SINE MIR -71 191 39 351 226 164 38 chr1 65407209 65407368 -216786296 - MIR SINE MIR -71 191 13 269 300 33 33 chr1 65407374 65407494 -216786170 - MER5A DNA MER1_type -38 151 32 265 257 54 14 chr1 65408216 65408290 -216785374 + MIR SINE MIR 60 136 -126 304 324 110 40 chr1 65409005 65409178 -216784486 + MIR SINE MIR 28 212 -50 252 243 51 26 chr1 65409299 65409385 -216784279 + MER5A DNA MER1_type 18 115 -74 195 302 70 12 chr1 65409309 65409395 -216784269 - MER5A DNA MER1_type -26 163 73 * 1335 218 21 23 chr1 65409517 65409940 -216783724 - MER74A LTR ERVL -30 528 27 586 298 30 21 chr1 65409986 65410221 -216783443 - L3 LINE CR1 -95 1482 1246 418 303 56 22 chr1 65410450 65410628 -216783036 - MIR SINE MIR -51 211 28 21 0 0 0 chr1 65411027 65411048 -216782616 + AT_rich Low_complexity Low_complexity 1 21 0 431 289 42 7 chr1 65411173 65411315 -216782349 + MIR SINE MIR 57 203 -59 190 132 38 0 chr1 65411375 65411428 -216782236 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 1747 153 53 66 chr1 65411557 65411835 -216781829 - MLT1A2 LTR MaLR -1 373 100 1912 176 39 22 chr1 65411835 65412193 -216781471 - THE1B LTR MaLR 0 364 1 1747 153 53 66 chr1 65412193 65412292 -216781372 - MLT1A2 LTR MaLR -274 100 1 546 286 119 5 chr1 65412447 65412657 -216781007 + MLT1L LTR MaLR 55 288 -327 435 254 43 14 chr1 65412769 65412907 -216780757 + MLT1L LTR MaLR 466 607 -8 207 211 56 122 chr1 65412918 65412972 -216780692 + MIR3 SINE MIR 73 120 -88 2253 101 7 3 chr1 65412972 65413280 -216780384 - AluSc SINE Alu 0 309 1 207 211 56 122 chr1 65413280 65413315 -216780349 + MIR3 SINE MIR 120 156 -52 3087 125 7 0 chr1 65413645 65414076 -216779588 + MER57B LTR ERV1 1 434 0 2342 95 3 0 chr1 65414665 65414971 -216778693 + AluSg SINE Alu 1 307 -3 545 292 20 30 chr1 65415063 65415265 -216778399 + Charlie8 DNA MER1_type 62 261 -2156 263 338 0 0 chr1 65415608 65415682 -216777982 + MIR SINE MIR 76 149 -59 265 309 170 21 chr1 65415930 65416118 -216777546 + L2 LINE L2 2967 3182 -90 235 174 0 43 chr1 65416134 65416203 -216777461 + T-rich Low_complexity Low_complexity 5 70 0 371 287 24 118 chr1 65416673 65416927 -216776737 - L3 LINE CR1 -53 1524 1295 367 278 12 69 chr1 65417049 65417222 -216776442 - MIR SINE MIR -46 216 54 472 298 57 0 chr1 65417369 65417510 -216776154 - MIR SINE MIR -69 193 45 254 200 100 57 chr1 65418419 65418559 -216775105 + L1ME LINE L1 4784 4929 -1217 2097 89 62 7 chr1 65418649 65418941 -216774723 + AluSq SINE Alu 1 308 -5 1977 162 0 0 chr1 65419170 65419472 -216774192 + AluSx SINE Alu 1 302 -10 234 281 114 78 chr1 65419477 65419709 -216773955 + L1ME LINE L1 5353 5575 -546 1618 177 62 80 chr1 65419709 65419993 -216773671 - MLT1B LTR MaLR -4 386 109 2172 108 0 42 chr1 65419993 65420326 -216773338 - AluSc SINE Alu 0 309 1 1618 177 62 80 chr1 65420326 65420431 -216773233 - MLT1B LTR MaLR -281 109 4 432 0 0 0 chr1 65420431 65420479 -216773185 + (CA)n Simple_repeat Simple_repeat 2 49 0 234 281 114 78 chr1 65420479 65420526 -216773138 + L1ME LINE L1 5574 5643 -478 21 0 0 0 chr1 65420683 65420704 -216772960 + AT_rich Low_complexity Low_complexity 1 21 0 448 303 76 24 chr1 65420856 65421067 -216772597 + MIR SINE MIR 28 249 -13 584 296 64 20 chr1 65421202 65421452 -216772212 + MIR SINE MIR 2 262 0 262 152 0 0 chr1 65422277 65422323 -216771341 - L1MB2 LINE L1 0 6171 6126 279 109 0 0 chr1 65422355 65422401 -216771263 + MADE1 DNA Mariner 35 80 0 * 920 266 119 19 chr1 65422401 65422708 -216770956 - MLT1A2 LTR MaLR -35 339 1 2614 154 13 22 chr1 65422711 65423173 -216770491 - L1MB3 LINE L1 -43 6140 5683 376 271 16 23 chr1 65423203 65423332 -216770332 + L1MA10 LINE L1 6206 6333 -1 251 298 92 88 chr1 65423400 65423628 -216770036 - MLT1K LTR MaLR -136 452 224 2378 60 0 0 chr1 65424390 65424705 -216768959 - AluY SINE Alu 0 315 1 38 105 0 0 chr1 65424871 65425014 -216768650 + AT_rich Low_complexity Low_complexity 1 143 0 328 304 0 49 chr1 65425194 65425296 -216768368 - MIR SINE MIR -86 122 26 2588 126 47 33 chr1 65425300 65425722 -216767942 + MSTA LTR MaLR 1 428 0 275 269 15 0 chr1 65425972 65426039 -216767625 + L2 LINE L2 2985 3052 -220 215 230 58 23 chr1 65426263 65426350 -216767314 + L2 LINE L2 3152 3241 -31 269 258 67 92 chr1 65426429 65426549 -216767115 + L2 LINE L2 3156 3272 0 2518 74 0 0 chr1 65427668 65427977 -216765687 - AluY SINE Alu -2 309 1 191 206 0 0 chr1 65427980 65428014 -216765650 - MER5A DNA MER1_type -117 72 39 632 297 6 11 chr1 65428034 65428216 -216765448 + MIR SINE MIR 57 237 -25 199 247 55 27 chr1 65428962 65429035 -216764629 - MIR3 SINE MIR -133 75 1 443 267 45 40 chr1 65429190 65429366 -216764298 + MIR SINE MIR 49 225 -37 451 275 36 123 chr1 65429689 65429998 -216763666 + L2 LINE L2 2986 3267 -5 1747 118 20 82 chr1 65431181 65431486 -216762178 + AluSx SINE Alu 1 286 -26 189 313 6 104 chr1 65431684 65431847 -216761817 - L2 LINE L2 -1 3271 3125 278 264 56 56 chr1 65432419 65432544 -216761120 - LTR67 LTR ERVL -1 556 432 1897 85 4 4 chr1 65432901 65433147 -216760517 - AluSp SINE Alu -52 261 16 211 274 170 28 chr1 65434063 65434169 -216759495 + MIR SINE MIR 21 141 -67 366 304 76 29 chr1 65434379 65434550 -216759114 + MLT1G LTR MaLR 412 590 0 21 0 0 0 chr1 65434861 65434882 -216758782 + AT_rich Low_complexity Low_complexity 1 21 0 279 237 153 42 chr1 65435123 65435241 -216758423 + L2 LINE L2 3137 3267 -5 437 63 66 45 chr1 65436266 65436601 -216757063 + (TA)n Simple_repeat Simple_repeat 1 342 0 244 171 40 26 chr1 65436609 65436685 -216756979 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 1912 113 18 14 chr1 65436696 65436978 -216756686 - AluSq SINE Alu -30 283 1 267 283 126 0 chr1 65437002 65437161 -216756503 - MER112 DNA MER1_type -37 223 45 251 236 22 45 chr1 65437278 65437367 -216756297 + L2 LINE L2 2336 2422 -892 195 130 56 19 chr1 65438022 65438076 -216755588 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 217 143 0 0 chr1 65438179 65438214 -216755450 + MIR3 SINE MIR 167 201 -7 565 342 29 8 chr1 65438472 65438712 -216754952 - MIR SINE MIR -16 246 2 230 187 66 18 chr1 65438741 65438825 -216754839 + MIR SINE MIR 98 183 -61 2149 163 9 9 chr1 65439067 65439410 -216754254 - MER2 DNA MER2_type 0 344 2 201 241 184 0 chr1 65439494 65439581 -216754083 + MIR SINE MIR 114 216 -46 643 285 115 4 chr1 65440183 65440418 -216753246 - MIR SINE MIR 0 262 2 2051 115 104 23 chr1 65440422 65440769 -216752895 - THE1C LTR MaLR 0 375 1 702 308 151 37 chr1 65441469 65442084 -216751580 + L2 LINE L2 2461 3005 -308 360 64 0 0 chr1 65442084 65442131 -216751533 + (TG)n Simple_repeat Simple_repeat 2 48 0 702 308 151 37 chr1 65442131 65442157 -216751507 + L2 LINE L2 3005 3027 -286 2559 182 23 45 chr1 65442157 65442673 -216750991 + MLT1D LTR MaLR 1 505 0 702 308 151 37 chr1 65442673 65442789 -216750875 + L2 LINE L2 3027 3313 0 254 309 91 27 chr1 65442802 65442912 -216750752 + L2 LINE L2 3124 3240 -32 294 304 99 17 chr1 65443675 65443861 -216749803 + MIR SINE MIR 6 206 -56 899 242 37 30 chr1 65443887 65444156 -216749508 - MER102a DNA MER1_type -1 329 59 2455 74 3 3 chr1 65444749 65445058 -216748606 - AluY SINE Alu -2 309 1 1054 253 146 31 chr1 65445063 65445482 -216748182 + MLT1J LTR MaLR 43 509 -2 645 306 182 28 chr1 65445959 65446387 -216747277 + L2 LINE L2 2818 3311 -2 195 143 29 0 chr1 65446870 65446905 -216746759 + MIR SINE MIR 110 145 -63 984 248 158 22 chr1 65446972 65447372 -216746292 + LTR16A1 LTR ERVL 2 455 -2 311 301 27 14 chr1 65447377 65447523 -216746141 - MER117 DNA MER1_type -49 148 1 228 186 0 0 chr1 65447525 65447568 -216746096 + MIR3 SINE MIR 155 197 -11 2172 115 20 0 chr1 65448021 65448317 -216745347 + AluSx SINE Alu 1 302 -10 749 233 43 43 chr1 65448708 65448918 -216744746 + MIR SINE MIR 1 210 -52 202 245 20 0 chr1 65449186 65449235 -216744429 - L2 LINE L2 -12 3260 3211 1633 170 10 14 chr1 65449289 65449577 -216744087 - AluJo SINE Alu -13 299 13 200 283 75 0 chr1 65449580 65449633 -216744031 - MIR SINE MIR -61 147 91 270 73 0 0 chr1 65450876 65450917 -216742747 + (TG)n Simple_repeat Simple_repeat 1 41 0 204 40 0 0 chr1 65451059 65451084 -216742580 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr1 65451149 65451172 -216742492 + (TG)n Simple_repeat Simple_repeat 2 24 0 210 250 59 15 chr1 65451501 65451569 -216742095 + L2 LINE L2 3194 3264 -8 202 327 50 0 chr1 65452262 65452363 -216741301 + MIR SINE MIR 49 154 -108 714 285 19 28 chr1 65452394 65452608 -216741056 - MIR SINE MIR -43 219 8 187 296 0 49 chr1 65453755 65453836 -216739828 + MIR SINE MIR 152 228 -34 328 248 264 0 chr1 65453930 65454059 -216739605 + MIR SINE MIR 87 249 -13 376 295 31 8 chr1 65454167 65454296 -216739368 + MIR SINE MIR 24 155 -107 288 339 10 19 chr1 65455027 65455260 -216738404 + CT-rich Low_complexity Low_complexity 1 230 0 215 339 123 60 chr1 65455279 65455677 -216737987 - L2 LINE L2 -41 3231 2809 2102 193 0 8 chr1 65456456 65456818 -216736846 - MLT1A1 LTR MaLR 0 365 7 2238 171 124 30 chr1 65456829 65457304 -216736360 + MLT2B1 LTR ERVL 1 520 0 181 363 38 12 chr1 65457567 65457647 -216736017 - MIR SINE MIR -106 102 21 410 255 69 78 chr1 65457962 65458166 -216735498 + MIR SINE MIR 20 221 -41 205 350 100 0 chr1 65458364 65458484 -216735180 - L2 LINE L2 -5 3267 3136 237 282 26 26 chr1 65458795 65458873 -216734791 - MIR SINE MIR 0 262 185 189 176 39 39 chr1 65460130 65460181 -216733483 - MIR3 SINE MIR -3 205 155 254 389 0 0 chr1 65460448 65460538 -216733126 + MIR SINE MIR 37 126 -82 500 228 114 39 chr1 65462593 65462848 -216730816 + HAL1 LINE L1 2201 2474 -33 994 201 27 0 chr1 65463232 65463416 -216730248 - MER5A DNA MER1_type 0 189 1 267 180 40 196 chr1 65464036 65464200 -216729464 + MIR SINE MIR 17 153 -62 478 263 103 31 chr1 65464257 65464481 -216729183 + MIR SINE MIR 11 250 -12 1086 293 43 45 chr1 65464617 65465084 -216728580 - L2 LINE L2 -1 3312 2847 515 220 91 8 chr1 65465111 65465241 -216728423 + MLT1B LTR MaLR 2 142 -248 3126 99 27 18 chr1 65465241 65465683 -216727981 + MER1A DNA MER1_type 1 446 -83 8375 81 8 19 chr1 65465784 65466001 -216727663 + HERVL LTR ERVL 4304 4522 -1132 2228 124 0 0 chr1 65466001 65466307 -216727357 + AluSx SINE Alu 1 306 -6 8375 81 8 19 chr1 65466307 65467218 -216726446 + HERVL LTR ERVL 4522 5420 -234 13532 89 11 0 chr1 65467224 65469041 -216724623 + L1P LINE L1 11 1846 -4300 377 135 0 0 chr1 65519086 65519162 -216674502 + AluSp/q SINE Alu 234 309 0 2093 197 61 44 chr1 65519166 65519693 -216673971 - L1MD2 LINE L1 -279 6080 5545 3819 256 45 16 chr1 65519753 65521078 -216672586 - L1M1 LINE L1 -5513 2052 10 539 301 46 40 chr1 65521091 65521437 -216672227 - L1MEd LINE L1 -4910 1209 862 2429 193 48 66 chr1 65521538 65522160 -216671504 - LTR9 LTR ERV1 0 612 2 672 234 60 15 chr1 65522166 65522367 -216671297 - L1MEd LINE L1 -5327 792 583 590 192 42 8 chr1 65522826 65522946 -216670718 - LTR8A LTR ERV1 -61 666 543 2353 130 59 17 chr1 65523010 65523417 -216670247 - LTR8A LTR ERV1 -303 424 1 1292 196 55 11 chr1 65523417 65523688 -216669976 - LTR9-int LTR ERV1 0 6263 5981 1378 128 44 9 chr1 65523696 65523922 -216669742 - LTR9-int LTR ERV1 -105 6226 5993 275 326 123 29 chr1 65524802 65524940 -216668724 - MIR3 SINE MIR -49 159 9 522 281 48 20 chr1 65526006 65526152 -216667512 - L2 LINE L2 0 3272 3123 1018 254 13 4 chr1 65526200 65526436 -216667228 - MIR SINE MIR -22 240 3 8927 154 23 64 chr1 65526997 65527971 -216665693 + L1MA6 LINE L1 3646 4658 -1642 2108 128 10 0 chr1 65527971 65528269 -216665395 - AluSg SINE Alu -9 301 1 8927 154 23 64 chr1 65528269 65529020 -216664644 + L1MA6 LINE L1 4658 5438 -862 2132 108 16 13 chr1 65529020 65529327 -216664337 + AluSg SINE Alu 1 308 -2 8927 154 23 64 chr1 65529327 65530372 -216663292 + L1MA6 LINE L1 5438 6299 -1 1871 141 80 42 chr1 65531507 65531868 -216661796 + THE1C LTR MaLR 1 375 0 311 318 13 45 chr1 65531975 65532129 -216661535 + MIR3 SINE MIR 49 197 -11 255 391 88 5 chr1 65532302 65532494 -216661170 - MIR SINE MIR -53 209 2 442 263 148 24 chr1 65532549 65532758 -216660906 + MIR SINE MIR 1 235 -27 21 0 0 0 chr1 65532771 65532792 -216660872 + AT_rich Low_complexity Low_complexity 1 21 0 917 249 21 17 chr1 65533483 65533720 -216659944 - MIR SINE MIR -23 239 2 277 250 15 0 chr1 65533948 65534016 -216659648 - MIR SINE MIR -105 157 89 425 299 27 21 chr1 65534458 65534645 -216659019 - MER117 DNA MER1_type -9 188 1 217 354 31 23 chr1 65534983 65535113 -216658551 + L2 LINE L2 2658 2788 -526 275 246 0 0 chr1 65535273 65535334 -216658330 + MIR SINE MIR 79 139 -123 710 196 0 6 chr1 65536294 65536457 -216657207 + GA-rich Low_complexity Low_complexity 4 165 0 211 210 99 86 chr1 65536902 65536983 -216656681 + L2 LINE L2 3191 3272 0 237 329 12 12 chr1 65537114 65537199 -216656465 + MIR SINE MIR 1 85 -177 903 232 31 18 chr1 65537235 65537647 -216656017 + MER110 LTR ERV1 40 491 0 2235 120 0 7 chr1 65537807 65538115 -216655549 - AluSx SINE Alu -6 306 1 671 252 21 98 chr1 65538662 65538896 -216654768 - MIR SINE MIR -35 227 12 249 271 52 58 chr1 65539036 65539191 -216654473 - L2 LINE L2 -573 2741 2588 288 226 16 0 chr1 65539708 65539770 -216653894 + CT-rich Low_complexity Low_complexity 2 64 0 405 136 0 0 chr1 65539774 65539840 -216653824 + (TTCC)n Simple_repeat Simple_repeat 4 69 0 2395 81 0 3 chr1 65540373 65540680 -216652984 + AluY SINE Alu 1 306 -5 275 298 114 23 chr1 65540866 65540997 -216652667 + MIR SINE MIR 110 252 -10 782 175 0 0 chr1 65541842 65541982 -216651682 + FLAM_C SINE Alu 3 142 0 287 300 150 7 chr1 65541990 65542130 -216651534 - MIR SINE MIR -102 160 1 3901 171 33 11 chr1 65542831 65543557 -216650107 + L1MB3 LINE L1 5440 6181 -2 2230 112 0 14 chr1 65543580 65543876 -216649788 + AluSx SINE Alu 1 292 -20 631 228 8 0 chr1 65544937 65545060 -216648604 + MER45A DNA AcHobo 55 178 0 745 255 16 94 chr1 65545206 65545524 -216648140 + L2 LINE L2 3020 3312 -1 270 206 32 16 chr1 65545707 65545770 -216647894 - MIR SINE MIR -63 145 82 184 250 73 59 chr1 65546227 65546295 -216647369 + MIR SINE MIR 58 126 -82 239 329 19 11 chr1 65546323 65546441 -216647223 + MIR SINE MIR 20 139 -69 334 259 59 30 chr1 65547286 65547410 -216646254 + MIR SINE MIR 40 165 -65 356 326 54 16 chr1 65547488 65547617 -216646047 - L2 LINE L2 -2 3270 3137 216 0 0 0 chr1 65547671 65547695 -216645969 + (T)n Simple_repeat Simple_repeat 1 24 0 311 318 16 31 chr1 65548524 65548653 -216645011 + MIR SINE MIR 28 154 -108 296 231 26 26 chr1 65548781 65548859 -216644805 + CT-rich Low_complexity Low_complexity 3 80 0 1413 266 95 21 chr1 65548913 65549397 -216644267 - LTR33 LTR ERVL 0 521 2 766 254 46 9 chr1 65549414 65549631 -216644033 + MIR SINE MIR 17 241 -21 199 331 64 25 chr1 65550136 65550279 -216643385 + MIR SINE MIR 7 152 -56 213 244 0 0 chr1 65550373 65550418 -216643246 + MIR SINE MIR 98 142 -66 205 171 0 0 chr1 65550538 65550579 -216643085 + C-rich Low_complexity Low_complexity 2 42 0 1724 163 0 62 chr1 65551694 65552000 -216641664 + AluSx SINE Alu 1 287 -25 400 327 130 5 chr1 65552092 65552300 -216641364 + MIR SINE MIR 12 245 -17 385 305 266 0 chr1 65552320 65552523 -216641141 + MIR SINE MIR 3 259 -3 190 266 25 25 chr1 65552698 65552777 -216640887 - L2 LINE L2 -214 3058 2980 219 352 14 0 chr1 65552777 65552848 -216640816 + L2 LINE L2 2999 3070 -202 493 293 176 0 chr1 65553065 65553287 -216640377 - MIR SINE MIR 0 262 2 300 300 12 12 chr1 65553970 65554050 -216639614 - MIR3 SINE MIR -15 193 114 1569 154 107 63 chr1 65554913 65555342 -216638322 + LTR7 LTR ERV1 1 448 -2 3522 116 45 4 chr1 65555456 65555947 -216637717 - MER9 LTR ERVK 0 511 1 295 310 103 14 chr1 65556798 65556943 -216636721 + MIR SINE MIR 29 186 -76 385 259 79 109 chr1 65557853 65558321 -216635343 - L1ME LINE L1 -394 5768 5315 1285 227 80 0 chr1 65558325 65558638 -216635026 + MER2 DNA MER2_type 2 339 -6 408 270 54 89 chr1 65558653 65558968 -216634696 - L1ME LINE L1 -837 5309 5006 233 349 124 28 chr1 65559252 65559309 -216634355 + L3 LINE CR1 979 1029 -548 2390 87 3 0 chr1 65559309 65559618 -216634046 + AluY SINE Alu 1 310 -1 233 349 124 28 chr1 65559618 65559778 -216633886 + L3 LINE CR1 1029 1217 -360 241 254 0 0 chr1 65559793 65559848 -216633816 - L2 LINE L2 -5 3308 3254 666 310 10 5 chr1 65560080 65560277 -216633387 + MIR SINE MIR 34 231 -31 376 298 204 29 chr1 65560334 65560579 -216633085 + L3 LINE CR1 1289 1576 -1 321 273 10 20 chr1 65561008 65561107 -216632557 - MIR SINE MIR -113 149 52 664 263 0 30 chr1 65561184 65561382 -216632282 + Charlie8 DNA MER1_type 85 276 -2141 280 308 136 6 chr1 65562209 65562378 -216631286 + MIR SINE MIR 66 256 -6 351 315 31 8 chr1 65562388 65562515 -216631149 + MIR3 SINE MIR 66 195 -13 227 274 0 0 chr1 65563390 65563441 -216630223 + GA-rich Low_complexity Low_complexity 1 51 0 225 0 0 0 chr1 65563616 65563641 -216630023 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 503 316 25 30 chr1 65564430 65564667 -216628997 + MIR SINE MIR 17 252 -10 445 280 20 33 chr1 65565190 65565340 -216628324 + MIR SINE MIR 20 167 -95 294 325 24 24 chr1 65565495 65565621 -216628043 - MIR SINE MIR -89 173 48 423 285 62 57 chr1 65565697 65565890 -216627774 - MIR3 SINE MIR 0 208 15 260 171 0 0 chr1 65566017 65566058 -216627606 + Charlie8 DNA MER1_type 2375 2415 -2 2045 105 0 14 chr1 65566185 65566515 -216627149 + AluSx SINE Alu 1 326 0 291 207 31 14 chr1 65566539 65566628 -216627036 - MIR SINE MIR -107 101 11 233 200 29 14 chr1 65566773 65566843 -216626821 + (CAAA)n Simple_repeat Simple_repeat 4 74 0 702 272 3 27 chr1 65566858 65567159 -216626505 - L1M4 LINE L1 -1391 4755 4462 206 317 138 32 chr1 65567923 65568046 -216625618 - L2 LINE L2 -1 3271 3136 422 342 110 40 chr1 65568127 65568528 -216625136 - L2 LINE L2 -348 2966 2538 272 298 53 26 chr1 65568503 65568617 -216625047 - MIR SINE MIR -126 136 20 * 591 211 197 0 chr1 65568834 65568976 -216624688 - MER5A DNA MER1_type 0 189 20 198 0 0 0 chr1 65568980 65569002 -216624662 + (T)n Simple_repeat Simple_repeat 1 22 0 309 307 16 63 chr1 65569012 65569100 -216624564 + MIR SINE MIR 11 93 -169 1644 169 80 71 chr1 65569100 65569563 -216624101 - MLT1C LTR MaLR 0 467 1 309 307 16 63 chr1 65569563 65569601 -216624063 + MIR SINE MIR 93 131 -131 1384 211 0 0 chr1 65569601 65569857 -216623807 - AluJo SINE Alu -15 297 42 245 189 326 0 chr1 65569860 65569955 -216623709 + MIR SINE MIR 119 244 -18 367 290 103 28 chr1 65569973 65570118 -216623546 - MIR SINE MIR -34 228 73 934 234 18 13 chr1 65571008 65571234 -216622430 + MIR SINE MIR 35 261 -1 592 249 78 66 chr1 65571337 65571594 -216622070 - L2 LINE L2 -497 2817 2558 213 279 0 59 chr1 65572075 65572143 -216621521 + L2 LINE L2 3242 3305 -8 299 162 23 8 chr1 65572263 65572402 -216621262 + CT-rich Low_complexity Low_complexity 1 141 0 390 57 0 0 chr1 65572402 65572455 -216621209 + (CA)n Simple_repeat Simple_repeat 1 53 0 351 314 67 42 chr1 65572517 65572800 -216620864 - MLT1H LTR MaLR -241 308 19 798 241 65 0 chr1 65572887 65573149 -216620515 - MER113 DNA MER1_type? -64 457 179 247 331 66 8 chr1 65574671 65574792 -216618872 - L2 LINE L2 -4 3309 3182 1659 171 14 20 chr1 65575177 65575469 -216618195 + AluJo SINE Alu 1 290 -22 2246 141 27 12 chr1 65576080 65576491 -216617173 - L1MA5A LINE L1 -4 6293 5877 193 277 85 43 chr1 65576559 65576653 -216617011 + L3b LINE CR1 1134 1231 -352 324 306 67 89 chr1 65576691 65576871 -216616793 - MIR3 SINE MIR -9 199 24 1008 237 44 0 chr1 65577330 65577579 -216616085 + L2 LINE L2 1825 2084 -1230 1051 90 8 0 chr1 65577579 65577712 -216615952 - AluSq/x SINE Alu -178 134 1 839 202 11 11 chr1 65577716 65577899 -216615765 + L2 LINE L2 2066 2248 -1066 636 261 159 86 chr1 65577904 65578366 -216615298 + L2 LINE L2 2528 3021 -292 2410 217 66 75 chr1 65578384 65579186 -216614478 - MER21B LTR ERV1 -57 806 12 592 328 96 4 chr1 65579196 65579467 -216614197 + L2 LINE L2 3017 3312 -1 690 289 35 58 chr1 65579650 65579676 -216613988 + MIR SINE MIR 9 34 -228 2265 116 0 0 chr1 65579676 65579979 -216613685 + AluSx SINE Alu 1 303 -9 690 289 35 58 chr1 65579979 65580212 -216613452 + MIR SINE MIR 34 262 0 277 188 24 0 chr1 65580299 65580384 -216613280 + (TA)n Simple_repeat Simple_repeat 2 88 0 250 279 0 47 chr1 65581949 65582035 -216611629 + MIR SINE MIR 117 198 -64 1517 186 61 0 chr1 65582071 65582335 -216611329 - AluJo SINE Alu -32 280 1 241 258 133 23 chr1 65582722 65582850 -216610814 - MIR SINE MIR -48 214 73 * 272 298 114 18 chr1 65582837 65582951 -216610713 + L2 LINE L2 3189 3313 0 181 220 60 0 chr1 65582955 65583005 -216610659 - MIR SINE MIR -173 89 37 25 0 0 0 chr1 65583135 65583160 -216610504 + AT_rich Low_complexity Low_complexity 1 25 0 894 252 19 52 chr1 65583359 65583783 -216609881 - L1ME1 LINE L1 -5 6230 5821 1461 186 87 24 chr1 65583783 65584117 -216609547 + MSTD LTR MaLR 1 355 -41 373 94 0 0 chr1 65584149 65584202 -216609462 + MSTD LTR MaLR 405 457 0 3963 238 74 23 chr1 65584204 65584554 -216609110 - L1ME1 LINE L1 -407 5826 5495 1790 207 60 20 chr1 65584554 65585003 -216608661 + MLT1C LTR MaLR 1 467 0 3963 238 74 23 chr1 65585003 65585126 -216608538 - L1ME1 LINE L1 -738 5495 5380 342 80 0 0 chr1 65585126 65585176 -216608488 + (CA)n Simple_repeat Simple_repeat 2 51 0 3963 238 74 23 chr1 65585176 65586575 -216607089 - L1ME1 LINE L1 -853 5380 3833 3256 260 83 43 chr1 65586588 65587910 -216605754 - L1ME1 LINE L1 -2533 3682 2413 1201 175 35 13 chr1 65587910 65588139 -216605525 + MER46A DNA MER2_type 2 235 -1 3256 260 83 43 chr1 65588139 65588385 -216605279 - L1ME1 LINE L1 -3802 2413 2178 195 114 0 0 chr1 65588385 65588420 -216605244 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 3256 260 83 43 chr1 65588420 65590380 -216603284 - L1ME1 LINE L1 -4037 2178 37 221 338 65 29 chr1 65590432 65590571 -216603093 + MIR SINE MIR 53 196 -66 428 223 0 8 chr1 65590621 65590751 -216602913 + CT-rich Low_complexity Low_complexity 2 130 0 762 326 69 45 chr1 65590770 65591335 -216602329 - L2 LINE L2 -62 3251 2671 1941 116 95 3 chr1 65592480 65592808 -216600856 - AluSx SINE Alu 0 355 2 369 0 0 0 chr1 65592868 65592909 -216600755 + (TC)n Simple_repeat Simple_repeat 2 42 0 * 414 0 0 0 chr1 65592908 65592954 -216600710 + (TA)n Simple_repeat Simple_repeat 1 46 0 430 307 93 19 chr1 65593212 65593427 -216600237 - MIR SINE MIR -1 261 31 187 256 133 33 chr1 65593755 65593845 -216599819 - MIR SINE MIR -41 221 123 196 288 45 15 chr1 65594067 65594133 -216599531 - MIR SINE MIR -116 146 79 532 174 16 0 chr1 65594748 65594869 -216598795 + CT-rich Low_complexity Low_complexity 2 124 0 1720 150 40 23 chr1 65594883 65595183 -216598481 - AluJb SINE Alu -7 305 1 13875 118 19 38 chr1 65595339 65595893 -216597771 + Tigger1 DNA MER2_type 8 571 -1847 1571 173 10 42 chr1 65595893 65596200 -216597464 + AluJb SINE Alu 12 308 -4 13875 118 19 38 chr1 65596200 65598102 -216595562 + Tigger1 DNA MER2_type 571 2418 0 549 242 73 22 chr1 65598136 65598314 -216595350 - MIR SINE MIR -2 260 74 746 263 132 4 chr1 65598319 65598547 -216595117 - MIR SINE MIR 0 262 6 2864 226 29 28 chr1 65598697 65600377 -216593287 + L1ME1 LINE L1 4387 6058 -108 366 317 63 7 chr1 65600413 65600555 -216593109 + MIR SINE MIR 23 172 -90 1544 176 16 72 chr1 65601140 65601527 -216592137 - MLT1A1 LTR MaLR 0 365 1 2639 111 3 11 chr1 65601912 65602290 -216591374 + THE1C LTR MaLR 1 375 0 211 339 134 64 chr1 65602827 65602998 -216590666 - L2 LINE L2 -7 3265 3083 * 224 268 107 27 chr1 65602995 65603107 -216590557 - MIR SINE MIR -8 254 134 546 280 125 15 chr1 65603243 65603443 -216590221 + MIR SINE MIR 13 234 -28 192 256 0 0 chr1 65604573 65604612 -216589052 + L2 LINE L2 3219 3257 -15 210 133 67 44 chr1 65604686 65604731 -216588933 + MIR SINE MIR 104 149 -113 248 369 12 0 chr1 65604748 65604832 -216588832 - MIR3 SINE MIR -35 173 89 521 317 19 14 chr1 65605378 65605586 -216588078 + MIR SINE MIR 3 211 -51 560 313 92 75 chr1 65606069 65606589 -216587075 + L2 LINE L2 2765 3271 -1 290 288 50 25 chr1 65606951 65607111 -216586553 - MER103 DNA DNA -2 164 1 401 53 0 18 chr1 65607472 65607529 -216586135 + (TA)n Simple_repeat Simple_repeat 2 57 0 183 300 20 70 chr1 65607637 65607737 -216585927 + MIR SINE MIR 118 212 -50 2294 78 0 0 chr1 65608027 65608356 -216585308 + AluY SINE Alu 1 329 0 309 304 29 43 chr1 65609509 65609647 -216584017 + MIR SINE MIR 76 211 -51 786 282 20 32 chr1 65609707 65609959 -216583705 - MIR SINE MIR -1 261 13 261 250 0 0 chr1 65610039 65610095 -216583569 - MIR SINE MIR -92 116 61 646 304 51 19 chr1 65610770 65610984 -216582680 + MIR SINE MIR 1 221 -41 1966 179 24 0 chr1 65611424 65611754 -216581910 + MER58B DNA MER1_type 4 341 0 276 327 19 10 chr1 65611896 65612000 -216581664 - MIR SINE MIR -156 106 2 415 285 35 81 chr1 65612932 65613104 -216580560 + MIR3 SINE MIR 1 164 -44 2055 156 0 0 chr1 65613430 65613738 -216579926 - AluJb SINE Alu -3 309 2 645 266 106 60 chr1 65614124 65614299 -216579365 - LTR16A LTR ERVL 0 450 284 2166 136 157 8 chr1 65614299 65614668 -216578996 + MSTA LTR MaLR 1 424 -4 645 266 106 60 chr1 65614668 65614890 -216578774 - LTR16A LTR ERVL -166 284 35 533 314 104 9 chr1 65615112 65615332 -216578332 - LTR33 LTR ERVL -278 243 3 403 278 185 0 chr1 65615631 65615836 -216577828 - MER112 DNA MER1_type 0 260 18 1877 292 123 21 chr1 65617342 65618006 -216575658 + L2 LINE L2 2195 3013 -300 2611 162 47 11 chr1 65618006 65618457 -216575207 + MLT1C LTR MaLR 1 467 0 1877 292 123 21 chr1 65618457 65618793 -216574871 + L2 LINE L2 3013 3313 0 197 327 56 0 chr1 65618818 65618925 -216574739 + L2 LINE L2 2563 2675 -639 285 301 0 0 chr1 65619021 65619094 -216574570 + MLT1H LTR MaLR 96 168 -381 435 227 113 53 chr1 65619172 65619322 -216574342 + MLT1G1 LTR MaLR 431 594 -1 293 213 55 0 chr1 65619399 65619473 -216574191 + Tigger2 DNA MER2_type 2 50 -2668 * 2311 159 44 16 chr1 65619472 65619906 -216573758 + Tigger2 DNA MER2_type 2273 2718 0 205 171 0 0 chr1 65619914 65619949 -216573715 + CT-rich Low_complexity Low_complexity 2 36 0 456 349 146 9 chr1 65619949 65619961 -216573703 + L2 LINE L2 2915 2924 -348 318 106 0 0 chr1 65619961 65620008 -216573656 + (CA)n Simple_repeat Simple_repeat 1 47 0 456 349 146 9 chr1 65620008 65620310 -216573354 + L2 LINE L2 2924 3272 0 419 269 117 35 chr1 65621102 65621299 -216572365 - MIR SINE MIR -28 234 22 289 321 5 75 chr1 65622321 65622508 -216571156 + L2 LINE L2 2934 3107 -165 1951 221 75 27 chr1 65622566 65622978 -216570686 - MLT1D LTR MaLR -2 503 63 2901 133 19 2 chr1 65622978 65623399 -216570265 + MSTA LTR MaLR 1 428 0 1951 221 75 27 chr1 65623399 65623466 -216570198 - MLT1D LTR MaLR -442 63 1 274 267 27 13 chr1 65623490 65623565 -216570099 + L2 LINE L2 3229 3304 -9 312 137 0 0 chr1 65624101 65624152 -216569512 + (A)n Simple_repeat Simple_repeat 1 51 0 357 250 7 79 chr1 65624550 65624702 -216568962 - MIR SINE MIR -56 206 66 231 326 16 8 chr1 65624795 65624924 -216568740 + (TA)n Simple_repeat Simple_repeat 1 130 0 375 332 72 60 chr1 65625175 65625440 -216568224 - L2 LINE L2 -14 3258 2991 346 275 36 60 chr1 65626560 65626727 -216566937 + MIR SINE MIR 20 182 -80 180 111 0 0 chr1 65626814 65626841 -216566823 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2319 92 10 0 chr1 65626843 65627149 -216566515 - AluY SINE Alu -2 309 1 243 238 0 16 chr1 65627166 65627229 -216566435 + (GAATG)n Simple_repeat Simple_repeat 3 64 0 220 278 134 10 chr1 65627651 65627748 -216565916 + L2 LINE L2 3200 3308 -5 251 341 0 48 chr1 65627752 65627878 -216565786 + MIR3 SINE MIR 37 156 -52 187 216 0 0 chr1 65628031 65628068 -216565596 + L3 LINE CR1 1523 1559 -18 223 286 104 13 chr1 65628604 65628681 -216564983 - L2 LINE L2 -1 3312 3229 253 274 60 0 chr1 65628880 65628964 -216564700 + MIR SINE MIR 172 260 -2 23 0 0 0 chr1 65629750 65629773 -216563891 + AT_rich Low_complexity Low_complexity 1 23 0 430 359 112 0 chr1 65630319 65630542 -216563122 - MIR SINE MIR -10 252 5 205 151 38 0 chr1 65630542 65630595 -216563069 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr1 65633084 65633105 -216560559 + AT_rich Low_complexity Low_complexity 1 21 0 242 277 64 64 chr1 65633638 65633779 -216559885 - MIR SINE MIR -14 248 108 1033 120 47 5 chr1 65634459 65634651 -216559013 - Charlie5 DNA MER1_type 0 2624 2425 2501 77 0 0 chr1 65634765 65635064 -216558600 - AluSg SINE Alu -11 299 1 235 255 0 0 chr1 65635383 65635430 -216558234 + L2 LINE L2 3234 3280 -33 549 283 72 11 chr1 65635563 65635743 -216557921 - MIR SINE MIR -71 191 1 727 281 75 10 chr1 65635808 65636047 -216557617 - MIR SINE MIR 0 262 9 283 335 71 32 chr1 65636760 65636915 -216556749 + MIR3 SINE MIR 25 185 -23 460 299 7 22 chr1 65638146 65638283 -216555381 - L2 LINE L2 -173 3099 2965 460 276 61 18 chr1 65639191 65639354 -216554310 + MIR SINE MIR 57 226 -36 390 333 60 48 chr1 65639609 65639722 -216553942 - MIR SINE MIR -7 255 145 2503 62 0 0 chr1 65639722 65640026 -216553638 - AluY SINE Alu -7 304 1 390 333 60 48 chr1 65640026 65640164 -216553500 - MIR SINE MIR -117 145 1 251 311 129 8 chr1 65641175 65641307 -216552357 + MIR SINE MIR 103 250 -12 432 268 73 24 chr1 65641346 65641469 -216552195 - L2 LINE L2 0 3272 3144 432 281 7 37 chr1 65641858 65641993 -216551671 - MIR3 SINE MIR -73 135 5 601 271 91 19 chr1 65642078 65642288 -216551376 - MIR SINE MIR -25 237 13 1457 259 78 66 chr1 65642391 65642686 -216550978 + MER68 LTR ERV1 1 308 -254 2392 81 3 3 chr1 65642686 65642994 -216550670 - AluY SINE Alu -3 308 1 1457 259 78 66 chr1 65642994 65643247 -216550417 + MER68 LTR ERV1 308 556 -6 1793 181 3 7 chr1 65643311 65643620 -216550044 - AluJb SINE Alu 0 312 5 469 260 11 51 chr1 65643642 65643819 -216549845 - L2 LINE L2 -4 3309 3140 265 225 22 56 chr1 65643948 65644037 -216549627 - L2 LINE L2 -218 3054 2969 217 245 0 19 chr1 65645374 65645427 -216548237 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 215 286 0 0 chr1 65646214 65646270 -216547394 - L2 LINE L2 -1 3271 3216 299 244 9 0 chr1 65646373 65646488 -216547176 + (TA)n Simple_repeat Simple_repeat 1 116 0 399 302 47 29 chr1 65647032 65647204 -216546460 - MIR SINE MIR -8 254 80 366 261 0 43 chr1 65647282 65647397 -216546267 - MIR SINE MIR -69 139 30 310 304 37 15 chr1 65647944 65648079 -216545585 - MIR SINE MIR -71 191 54 902 276 78 41 chr1 65648653 65649040 -216544624 + L2 LINE L2 2350 2750 -564 240 347 12 54 chr1 65649320 65649487 -216544177 + L2 LINE L2 2709 2868 -446 396 192 0 0 chr1 65649539 65649643 -216544021 + (CCA)n Simple_repeat Simple_repeat 1 104 0 204 355 8 16 chr1 65649662 65649783 -216543881 + (CCA)n Simple_repeat Simple_repeat 1 120 0 241 274 0 0 chr1 65649854 65649905 -216543759 - MIR SINE MIR -201 61 11 340 354 54 8 chr1 65650361 65650491 -216543173 + MIR3 SINE MIR 10 145 -63 1891 171 0 13 chr1 65650546 65650862 -216542802 - AluJo SINE Alu 0 312 1 277 263 0 125 chr1 65652036 65652196 -216541468 - L2 LINE L2 -217 3055 2916 1664 152 47 145 chr1 65652227 65652277 -216541387 - MER47B DNA MER2_type -1953 370 317 2026 126 63 38 chr1 65652277 65652642 -216541022 - THE1C LTR MaLR -1 374 1 10305 115 35 52 chr1 65652642 65654248 -216539416 - THE1C-int LTR MaLR 0 1580 3 2011 148 40 35 chr1 65654250 65654623 -216539041 - THE1C LTR MaLR 0 375 1 1664 152 47 145 chr1 65654623 65654975 -216538689 - MER47B DNA MER2_type -2006 317 4 617 342 45 12 chr1 65655084 65655327 -216538337 + MIR SINE MIR 6 256 -6 193 279 98 0 chr1 65655333 65655394 -216538270 + L2 LINE L2 2994 3060 -212 231 356 10 10 chr1 65655768 65655869 -216537795 + L2 LINE L2 2872 2972 -342 636 314 106 29 chr1 65656408 65656851 -216536813 + LTR33 LTR ERVL 45 521 0 290 320 53 37 chr1 65657234 65657478 -216536186 + MIR SINE MIR 1 248 -14 529 237 0 0 chr1 65657568 65657686 -216535978 - L3 LINE CR1 -205 1372 1255 2413 74 10 0 chr1 65657959 65658258 -216535406 + AluY SINE Alu 1 302 -9 223 265 0 0 chr1 65658580 65658629 -216535035 + (CA)n Simple_repeat Simple_repeat 2 50 0 410 272 32 31 chr1 65659071 65659463 -216534201 + L1M4c LINE L1 2253 2648 -3734 587 267 43 71 chr1 65659638 65659893 -216533771 - MIR SINE MIR -11 251 4 259 243 41 89 chr1 65661524 65661693 -216531971 - L1ME4a LINE L1 -94 6027 5867 218 264 204 51 chr1 65661714 65661930 -216531734 - L2 LINE L2 -1324 1990 1742 296 301 19 10 chr1 65662123 65662226 -216531438 - MIR SINE MIR -127 135 32 1022 195 73 19 chr1 65663737 65664169 -216529495 + MER39 LTR ERV1 3 544 -163 224 300 176 29 chr1 65664310 65664520 -216529144 + L2 LINE L2 9 249 -3065 * 738 240 16 49 chr1 65664491 65664737 -216528927 + L2 LINE L2 3076 3313 0 185 310 214 48 chr1 65665399 65665586 -216528078 + L3 LINE CR1 1318 1535 -42 182 156 22 0 chr1 65665738 65665783 -216527881 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 301 186 224 51 chr1 65666261 65666417 -216527247 - MIR SINE MIR -72 190 8 938 301 136 11 chr1 65667068 65667860 -216525804 - L2 LINE L2 0 3313 2436 263 273 96 91 chr1 65667870 65668057 -216525607 - L2 LINE L2 -1078 2236 2049 2103 135 0 3 chr1 65668263 65668574 -216525090 + AluSx SINE Alu 2 311 -1 259 178 0 0 chr1 65668682 65668727 -216524937 + L2 LINE L2 3251 3295 -18 189 107 0 0 chr1 65669189 65669217 -216524447 + (ATG)n Simple_repeat Simple_repeat 1 28 0 910 230 11 0 chr1 65669226 65669417 -216524247 - MIR SINE MIR -1 261 69 246 279 0 59 chr1 65669453 65669521 -216524143 - L2 LINE L2 -2 3270 3207 201 74 0 0 chr1 65669635 65669662 -216524002 + (A)n Simple_repeat Simple_repeat 1 27 0 336 259 6 167 chr1 65669662 65669836 -216523828 - MIR3 SINE MIR -31 177 32 187 402 22 0 chr1 65669988 65670080 -216523584 - MIR3 SINE MIR -21 187 94 26 30 0 0 chr1 65671139 65671172 -216522492 + AT_rich Low_complexity Low_complexity 1 33 0 316 273 205 29 chr1 65671181 65671357 -216522307 - MIR SINE MIR -29 233 36 329 235 28 18 chr1 65671807 65671924 -216521740 - MIR SINE MIR -62 146 41 565 260 119 27 chr1 65671986 65672205 -216521459 - MIR SINE MIR -6 256 18 357 335 52 31 chr1 65672977 65673003 -216520661 + MIR SINE MIR 23 47 -215 1493 192 120 27 chr1 65673003 65673336 -216520328 - MLT1A1 LTR MaLR 0 365 2 357 335 52 31 chr1 65673336 65673503 -216520161 + MIR SINE MIR 47 220 -42 218 119 83 24 chr1 65673529 65673613 -216520051 + (TA)n Simple_repeat Simple_repeat 2 90 0 417 363 78 23 chr1 65673652 65673908 -216519756 - L3 LINE CR1 -15 1562 1293 349 288 72 22 chr1 65673913 65674052 -216519612 - MIR SINE MIR -6 256 111 238 233 50 0 chr1 65674059 65674119 -216519545 - MIR SINE MIR -82 180 118 2640 233 95 39 chr1 65674287 65675234 -216518430 + L1ME1 LINE L1 5188 6162 -4 880 264 82 28 chr1 65675665 65676017 -216517647 - L2 LINE L2 -1 3312 2942 318 343 52 8 chr1 65676147 65676281 -216517383 - MIR SINE MIR -74 188 49 185 229 0 0 chr1 65676358 65676393 -216517271 + MIR SINE MIR 77 111 -151 340 83 14 139 chr1 65676412 65676435 -216517229 - AluJo SINE Alu -165 137 113 381 22 0 0 chr1 65676435 65676481 -216517183 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 340 83 14 139 chr1 65676481 65676529 -216517135 - AluJo SINE Alu -189 113 75 732 133 0 0 chr1 65676529 65676627 -216517037 - AluJo SINE Alu -213 99 2 499 282 123 59 chr1 65676718 65677076 -216516588 - MLT1J1 LTR MaLR -3 443 63 189 300 92 62 chr1 65677210 65677340 -216516324 + L2 LINE L2 2793 2926 -388 398 283 22 0 chr1 65677506 65677598 -216516066 + MIR SINE MIR 18 111 -151 1304 204 11 2 chr1 65677598 65677885 -216515779 - MLT1A1 LTR MaLR -2 363 13 283 51 0 0 chr1 65678001 65678040 -216515624 + MADE1 DNA Mariner 42 80 0 254 349 35 0 chr1 65678106 65678192 -216515472 + L2 LINE L2 3225 3313 0 465 301 192 0 chr1 65678295 65678514 -216515150 + MIR SINE MIR 2 262 0 371 252 47 47 chr1 65679454 65679581 -216514083 - MIR SINE MIR -116 146 20 445 222 0 4 chr1 65680279 65680433 -216513231 - MER20 DNA MER1_type -12 207 1 413 226 78 17 chr1 65680433 65680548 -216513116 + L2 LINE L2 3148 3269 -3 185 296 68 57 chr1 65680723 65680811 -216512853 + L2 LINE L2 3004 3092 -180 368 300 163 18 chr1 65680865 65681092 -216512572 + MIR SINE MIR 3 262 0 280 339 35 17 chr1 65681081 65681196 -216512468 + L2 LINE L2 3176 3292 -21 * 262 330 34 0 chr1 65681291 65681379 -216512285 - MIR3 SINE MIR -50 158 68 506 281 41 12 chr1 65681817 65681988 -216511676 + MIR SINE MIR 79 254 -8 544 302 79 5 chr1 65682214 65682429 -216511235 + MIR SINE MIR 20 250 -12 207 255 43 0 chr1 65682461 65682508 -216511156 + L2 LINE L2 3224 3272 0 233 279 171 31 chr1 65682532 65682661 -216511003 + MIR3 SINE MIR 1 147 -61 803 264 31 31 chr1 65683084 65683311 -216510353 - MIR SINE MIR -33 229 3 299 267 47 12 chr1 65683311 65683390 -216510274 - MIR SINE MIR -91 117 36 345 237 75 71 chr1 65683718 65683931 -216509733 + MIR SINE MIR 51 262 0 2204 192 8 3 chr1 65683966 65684326 -216509338 + MLT1A1 LTR MaLR 4 365 0 200 337 71 20 chr1 65684339 65684437 -216509227 - L2 LINE L2 -47 3225 3123 211 327 0 0 chr1 65685099 65685154 -216508510 + L2 LINE L2 3166 3220 -52 687 204 120 12 chr1 65685404 65685571 -216508093 + MIR SINE MIR 4 188 -74 516 262 108 114 chr1 65687099 65687197 -216506467 + L2 LINE L2 2932 3029 -243 240 86 0 0 chr1 65687197 65687232 -216506432 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 516 262 108 114 chr1 65687232 65687476 -216506188 + L2 LINE L2 3029 3272 0 197 160 0 40 chr1 65688802 65688852 -216504812 + (TATG)n Simple_repeat Simple_repeat 2 49 0 442 225 146 20 chr1 65688855 65689006 -216504658 - MIR SINE MIR -44 218 49 2894 12 0 12 chr1 65689323 65689645 -216504019 - AluYb8 SINE Alu 0 318 1 506 309 52 13 chr1 65689651 65689881 -216503783 - L1ME4a LINE L1 -2 6119 5881 3965 129 30 0 chr1 65690327 65690933 -216502731 - L1MA5 LINE L1 -2 6298 5675 797 237 60 11 chr1 65690933 65691145 -216502519 + MLT1J2 LTR MaLR 31 271 -175 201 250 50 25 chr1 65692232 65692312 -216501352 + L2 LINE L2 2976 3057 -215 374 271 36 36 chr1 65692799 65692939 -216500725 + MIR SINE MIR 77 216 -46 496 327 60 5 chr1 65693204 65693434 -216500230 + MIR SINE MIR 14 254 -8 281 309 64 27 chr1 65694243 65694353 -216499311 + L2 LINE L2 3143 3256 -16 197 185 74 37 chr1 65696154 65696208 -216497456 - L2 LINE L2 -35 3237 3182 514 271 26 19 chr1 65696306 65696461 -216497203 - L1ME4a LINE L1 -2152 5656 5501 2653 142 14 5 chr1 65696463 65696878 -216496786 + MSTB1 LTR MaLR 1 419 -13 641 286 35 39 chr1 65696937 65697192 -216496472 - MIR SINE MIR -1 261 8 256 299 55 39 chr1 65697493 65697620 -216496044 + MIR SINE MIR 3 132 -76 2104 105 27 0 chr1 65697942 65698236 -216495428 - AluSg SINE Alu -7 303 2 254 231 0 123 chr1 65698272 65698402 -216495262 - MIR SINE MIR -7 255 142 670 326 45 0 chr1 65698500 65698745 -216494919 + MIR SINE MIR 7 262 0 251 336 182 0 chr1 65699054 65699164 -216494500 + L2 LINE L2 3143 3272 0 26 0 0 0 chr1 65700569 65700595 -216493069 + AT_rich Low_complexity Low_complexity 1 26 0 234 273 244 12 chr1 65700802 65700974 -216492690 + MIR SINE MIR 36 247 -15 399 207 71 64 chr1 65701515 65701655 -216492009 + MER5B DNA MER1_type 4 144 -34 1298 228 55 0 chr1 65702187 65702518 -216491146 - AluJo SINE Alu 0 352 6 6745 53 25 1 chr1 65702736 65703794 -216489870 + L1PA7 LINE L1 5082 6160 0 940 261 37 5 chr1 65704156 65704408 -216489256 - MIR SINE MIR 0 262 6 239 287 65 19 chr1 65704496 65704604 -216489060 + L2 LINE L2 3169 3281 -32 874 174 12 41 chr1 65704699 65704871 -216488793 - MER5A DNA MER1_type 0 189 23 268 333 0 0 chr1 65705251 65705335 -216488329 - L2 LINE L2 -49 3223 3140 3946 168 23 9 chr1 65705444 65706145 -216487519 + MER50 LTR ERV1 1 711 -23 493 298 37 38 chr1 65706146 65706554 -216487110 - L2 LINE L2 -226 3087 2625 869 253 51 36 chr1 65706963 65707216 -216486448 - MIR SINE MIR 0 262 6 371 343 0 0 chr1 65707283 65707382 -216486282 - L2 LINE L2 -49 3223 3125 206 298 0 0 chr1 65707812 65707869 -216485795 + L2 LINE L2 3228 3284 -29 275 336 58 0 chr1 65707899 65708003 -216485661 + MIR SINE MIR 45 154 -108 237 196 0 0 chr1 65708097 65708148 -216485516 + (TTA)n Simple_repeat Simple_repeat 3 53 0 708 246 15 97 chr1 65708288 65708585 -216485079 + MIR SINE MIR 1 262 0 387 282 83 39 chr1 65709520 65709676 -216483988 - MIR3 SINE MIR -16 192 30 273 256 51 13 chr1 65709947 65710025 -216483639 - MIR SINE MIR -79 183 103 277 155 35 0 chr1 65710226 65710284 -216483380 - L1MD2 LINE L1 -3 6356 6297 557 290 60 5 chr1 65710380 65710580 -216483084 + MIR SINE MIR 8 218 -44 267 152 0 0 chr1 65710622 65710668 -216482996 + (TG)n Simple_repeat Simple_repeat 1 46 0 928 219 6 0 chr1 65711719 65711883 -216481781 - FRAM SINE Alu 0 166 2 511 377 66 4 chr1 65712519 65712747 -216480917 + L2 LINE L2 3027 3268 -4 241 273 47 55 chr1 65712772 65712900 -216480764 - MIR SINE MIR -33 229 103 189 0 0 0 chr1 65713722 65713743 -216479921 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1226 181 5 9 chr1 65713746 65713962 -216479702 + AluJb SINE Alu 92 306 -6 1162 273 65 25 chr1 65713977 65714457 -216479207 - L1MC4 LINE L1 -30 8012 7514 668 249 82 75 chr1 65714459 65714651 -216479013 - L1MC4 LINE L1 -631 7411 7222 3033 74 0 6 chr1 65714651 65715016 -216478648 - THE1B LTR MaLR -1 363 1 668 249 82 75 chr1 65715016 65715236 -216478428 - L1MC4 LINE L1 -820 7222 6996 181 347 63 11 chr1 65715419 65715514 -216478150 + L2 LINE L2 3121 3220 -52 253 208 94 52 chr1 65715701 65715797 -216477867 + MLT1J LTR MaLR 412 511 0 464 208 192 17 chr1 65715875 65715995 -216477669 - MER5A DNA MER1_type -29 160 20 233 323 31 21 chr1 65716042 65716138 -216477526 + L2 LINE L2 2932 3028 -244 * 1422 293 112 60 chr1 65716136 65716774 -216476890 - L2 LINE L2 -2 3311 2707 1194 221 48 8 chr1 65716774 65717023 -216476641 - MIR SINE MIR -1 261 3 1422 293 112 60 chr1 65717023 65717712 -216475952 - L2 LINE L2 -606 2707 1914 605 261 164 4 chr1 65717748 65717974 -216475690 + MLT1J LTR MaLR 34 295 -216 808 251 106 4 chr1 65718021 65718256 -216475408 - MIR SINE MIR -1 261 3 370 307 100 21 chr1 65718267 65718508 -216475156 - L2 LINE L2 -2077 1237 978 203 121 0 0 chr1 65718611 65718644 -216475020 + L2 LINE L2 3281 3313 0 468 0 0 0 chr1 65718719 65718771 -216474893 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 416 291 114 6 chr1 65719319 65719494 -216474170 - MIR SINE MIR -48 214 21 657 241 38 100 chr1 65719536 65719905 -216473759 - MER7A DNA MER2_type -1 345 2 389 366 14 0 chr1 65720940 65721082 -216472582 + MIR3 SINE MIR 39 182 -26 362 285 119 10 chr1 65722588 65722781 -216470883 + MIR SINE MIR 23 236 -26 268 307 146 15 chr1 65723046 65723183 -216470481 + LTR33A LTR ERVL 1 155 -368 578 283 48 0 chr1 65723615 65723802 -216469862 + LTR33A LTR ERVL 328 523 0 237 200 40 0 chr1 65723848 65723898 -216469766 + L1ME4a LINE L1 5596 5647 -474 353 284 215 11 chr1 65723912 65724173 -216469491 + L2 LINE L2 2990 3303 -10 12964 31 27 0 chr1 65724176 65726366 -216467298 + L1PA4 LINE L1 3942 6155 0 249 248 59 40 chr1 65726460 65726561 -216467103 + L1ME4a LINE L1 5694 5796 -2012 280 302 147 0 chr1 65726591 65726720 -216466944 + MER5A DNA MER1_type 2 149 -40 249 190 74 123 chr1 65726919 65727082 -216466582 + L1ME4a LINE L1 5964 6118 -3 726 237 36 97 chr1 65728276 65728437 -216465227 - MIR SINE MIR 0 262 124 2271 96 0 17 chr1 65728437 65728739 -216464925 + AluSq SINE Alu 1 297 -16 726 237 36 97 chr1 65728739 65728855 -216464809 - MIR SINE MIR -138 124 2 320 242 66 0 chr1 65729172 65729263 -216464401 + MIR SINE MIR 120 216 -46 1088 117 0 47 chr1 65729701 65729849 -216463815 + AluSg/x SINE Alu 135 288 -24 366 42 0 0 chr1 65729849 65729897 -216463767 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 334 136 17 0 chr1 65729902 65729961 -216463703 + L1MB8 LINE L1 6117 6176 -2 1088 117 0 47 chr1 65729961 65729977 -216463687 + AluSg/x SINE Alu 292 297 -15 349 207 0 11 chr1 65729977 65730035 -216463629 - MER58 DNA MER1_type -112 229 173 2172 148 108 35 chr1 65730035 65730324 -216463340 - MSTB2 LTR MaLR 0 457 126 2361 84 0 0 chr1 65730324 65730622 -216463042 + AluY SINE Alu 1 298 -13 2172 148 108 35 chr1 65730622 65730758 -216462906 - MSTB2 LTR MaLR -331 126 1 349 207 0 11 chr1 65730758 65730784 -216462880 - MER58 DNA MER1_type -168 173 148 219 336 122 14 chr1 65730827 65731041 -216462623 + MIR SINE MIR 20 256 -6 337 304 28 116 chr1 65731067 65731317 -216462347 - L2 LINE L2 -44 3228 3001 438 286 39 55 chr1 65731317 65731499 -216462165 + MIR SINE MIR 20 198 -64 344 293 88 39 chr1 65731765 65731970 -216461694 - MIR SINE MIR -13 249 35 * 378 358 0 0 chr1 65731936 65732059 -216461605 - L3 LINE CR1 -25 1552 1430 1399 167 0 21 chr1 65732105 65732344 -216461320 - AluJo SINE Alu -23 289 56 371 291 184 7 chr1 65732384 65732525 -216461139 + MIR SINE MIR 47 212 -50 1011 303 14 18 chr1 65732613 65733043 -216460621 + L1MC4a LINE L1 5531 5963 -158 1018 291 145 23 chr1 65733261 65734055 -216459609 + L2 LINE L2 2390 3282 -31 360 216 14 14 chr1 65734060 65734199 -216459465 + GA-rich Low_complexity Low_complexity 3 141 0 1668 63 0 5 chr1 65734444 65734650 -216459014 + AluY SINE Alu 100 304 -7 308 197 0 13 chr1 65734721 65734797 -216458867 + CT-rich Low_complexity Low_complexity 2 76 0 391 290 81 68 chr1 65736143 65736238 -216457426 + MIR SINE MIR 12 104 -158 2018 117 13 29 chr1 65736238 65736545 -216457119 - AluSq SINE Alu -7 306 5 391 290 81 68 chr1 65736545 65736697 -216456967 + MIR SINE MIR 104 262 0 211 367 28 0 chr1 65736993 65737102 -216456562 - L3 LINE CR1 -207 1370 1259 296 302 78 26 chr1 65737246 65737362 -216456302 - L2 LINE L2 -1 3271 3150 505 210 57 16 chr1 65737418 65737542 -216456122 - MIR3 SINE MIR -45 163 35 181 234 128 64 chr1 65737924 65738018 -216455646 + MIR SINE MIR 85 184 -78 282 239 69 100 chr1 65738257 65738441 -216455223 + MIR SINE MIR 30 204 -58 485 302 22 0 chr1 65738769 65738908 -216454756 + MIR SINE MIR 26 167 -95 820 119 0 94 chr1 65739164 65739324 -216454340 + FRAM SINE Alu 31 175 -1 542 204 22 88 chr1 65739855 65740081 -216453583 - L1ME2 LINE L1 -10 6154 5944 * 5707 182 37 19 chr1 65740059 65741341 -216452323 - L1MC1 LINE L1 0 6613 5315 2043 194 32 34 chr1 65741341 65741784 -216451880 - MSTB2 LTR MaLR 0 457 16 9853 221 36 50 chr1 65741790 65744184 -216449480 - L1MC1 LINE L1 -1109 5317 2844 848 58 0 91 chr1 65744184 65744305 -216449359 - AluSq SINE Alu -114 199 90 9853 221 36 50 chr1 65744305 65744657 -216449007 - L1MC1 LINE L1 -3582 2844 2489 3129 180 63 3 chr1 65744649 65745217 -216448447 - L1MC1 LINE L1 -5822 604 3 * 2178 201 40 34 chr1 65745208 65745683 -216447981 - L1ME2 LINE L1 -197 6247 5767 * 2130 89 35 0 chr1 65745683 65745845 -216447819 - AluSg SINE Alu -18 292 114 369 0 0 0 chr1 65745845 65745886 -216447778 + (TG)n Simple_repeat Simple_repeat 2 42 0 2130 89 35 0 chr1 65745886 65746005 -216447659 - AluSg SINE Alu -196 114 1 2178 201 40 34 chr1 65746005 65746061 -216447603 - L1ME2 LINE L1 -677 5767 5713 251 236 42 28 chr1 65746237 65746309 -216447355 - MIR SINE MIR 0 262 190 223 340 200 20 chr1 65746313 65746513 -216447151 - MIR SINE MIR -6 256 21 753 301 24 16 chr1 65746962 65747211 -216446453 + MIR SINE MIR 12 262 0 361 224 51 10 chr1 65747366 65747464 -216446200 - MIR SINE MIR -75 187 86 207 0 0 0 chr1 65747508 65747531 -216446133 + (CAA)n Simple_repeat Simple_repeat 2 24 0 321 336 23 8 chr1 65747740 65747871 -216445793 + MIR3 SINE MIR 39 171 -37 1745 129 0 40 chr1 65748179 65748457 -216445207 - AluSx SINE Alu -18 294 28 26 0 0 0 chr1 65748461 65748487 -216445177 + AT_rich Low_complexity Low_complexity 1 26 0 589 299 26 59 chr1 65748507 65748778 -216444886 + L2 LINE L2 2699 2960 -354 352 325 79 8 chr1 65748818 65748944 -216444720 + L2 LINE L2 3125 3259 -13 247 316 13 0 chr1 65749929 65750008 -216443656 + MIR SINE MIR 69 148 -114 2320 120 32 35 chr1 65750118 65750492 -216443172 + THE1C LTR MaLR 3 375 0 1471 201 22 60 chr1 65750782 65751151 -216442513 - MLT1A1 LTR MaLR 0 365 11 204 274 30 143 chr1 65751223 65751391 -216442273 + L2 LINE L2 2899 3047 -225 205 323 60 30 chr1 65751515 65751648 -216442016 - MIR SINE MIR -113 149 13 327 259 42 90 chr1 65752155 65752310 -216441354 - MIR3 SINE MIR -27 181 35 527 250 160 0 chr1 65752310 65752466 -216441198 - MER5A DNA MER1_type 0 189 9 328 282 10 19 chr1 65753160 65753263 -216440401 + MIR SINE MIR 107 208 -54 2415 73 3 7 chr1 65753336 65753636 -216440028 + AluY SINE Alu 1 299 -12 321 329 49 49 chr1 65753637 65753780 -216439884 + MIR3 SINE MIR 1 143 -65 228 336 80 40 chr1 65754026 65754151 -216439513 - L2 LINE L2 -6 3266 3137 432 303 68 41 chr1 65754344 65754638 -216439026 + MLT1J LTR MaLR 172 473 -38 410 299 61 48 chr1 65754723 65754954 -216438710 - MIR SINE MIR -9 253 20 259 308 80 83 chr1 65755963 65756275 -216437389 + L2 LINE L2 2878 3188 -84 333 68 0 0 chr1 65757013 65757057 -216436607 + (CAT)n Simple_repeat Simple_repeat 2 45 0 1507 200 44 0 chr1 65757059 65757206 -216436458 - AluJo SINE Alu -30 282 143 276 30 0 0 chr1 65757206 65757239 -216436425 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1507 200 44 0 chr1 65757239 65757361 -216436303 - AluJo SINE Alu -169 143 1 283 261 210 40 chr1 65757734 65757910 -216435754 - MIR SINE MIR -34 228 23 790 244 101 32 chr1 65758223 65758665 -216434999 + LTR33 LTR ERVL 10 521 0 261 250 36 0 chr1 65758718 65758774 -216434890 - MIR3 SINE MIR -14 194 137 498 312 88 28 chr1 65758810 65759025 -216434639 - MIR SINE MIR -15 247 20 762 265 43 5 chr1 65759173 65759384 -216434280 - MER20 DNA MER1_type 0 219 1 360 298 33 7 chr1 65760048 65760199 -216433465 + L1ME4a LINE L1 5964 6118 -3 398 296 116 42 chr1 65760404 65760620 -216433044 + MLT1K LTR MaLR 190 421 -167 2268 138 12 21 chr1 65760886 65761226 -216432438 - MER1B DNA MER1_type 0 337 1 619 55 33 0 chr1 65761241 65761332 -216432332 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 465 291 2 1 chr1 65761389 65761547 -216432117 - L1ME3A LINE L1 -219 5951 5794 214 227 67 76 chr1 65761624 65761743 -216431921 - MIR SINE MIR -18 244 127 717 264 136 0 chr1 65761912 65762132 -216431532 + MIR SINE MIR 13 262 0 304 282 122 13 chr1 65762183 65762339 -216431325 + L2 LINE L2 2594 2766 -548 341 306 105 64 chr1 65762386 65762759 -216430905 + L2 LINE L2 2882 3269 -3 471 341 74 0 chr1 65763293 65763510 -216430154 + MIR SINE MIR 19 251 -11 446 308 133 13 chr1 65763906 65764140 -216429524 + MLT1J LTR MaLR 120 381 -130 330 320 125 47 chr1 65764585 65764882 -216428782 - L3 LINE CR1 -83 1494 1175 233 321 62 0 chr1 65764919 65765000 -216428664 + MIR3 SINE MIR 71 156 -52 197 260 20 0 chr1 65765239 65765289 -216428375 + MIR3 SINE MIR 151 201 -7 1576 257 75 22 chr1 65765363 65765858 -216427806 + LTR33 LTR ERVL 1 521 0 181 236 57 113 chr1 65766614 65766720 -216426944 - MIR SINE MIR -55 207 108 614 270 142 10 chr1 65767946 65768377 -216425287 - LTR33 LTR ERVL 0 521 1 1932 282 93 21 chr1 65768855 65769512 -216424152 - L2 LINE L2 -568 2746 2043 2138 105 28 0 chr1 65769773 65770059 -216423605 - AluSq SINE Alu -19 294 1 358 246 97 18 chr1 65770135 65770249 -216423415 - L2 LINE L2 0 3313 3191 197 284 137 21 chr1 65770279 65770374 -216423290 + MIR SINE MIR 50 155 -107 1756 178 17 84 chr1 65770374 65770791 -216422873 - MLT1B LTR MaLR -1 389 1 278 235 83 83 chr1 65770921 65771053 -216422611 + MIR SINE MIR 58 189 -73 332 231 71 6 chr1 65771217 65771331 -216422333 - MIR SINE MIR -42 220 97 483 332 36 40 chr1 65771986 65772209 -216421455 + MIR SINE MIR 25 246 -16 186 340 78 58 chr1 65772548 65772739 -216420925 - L2 LINE L2 -1 3271 3077 * 518 285 76 20 chr1 65772722 65772947 -216420717 + MIR SINE MIR 24 261 -1 196 229 46 0 chr1 65773000 65773109 -216420555 + (TA)n Simple_repeat Simple_repeat 2 115 0 2376 67 10 20 chr1 65773468 65773767 -216419897 + AluSp SINE Alu 1 296 -17 585 337 29 16 chr1 65773853 65774096 -216419568 + MIR SINE MIR 17 262 0 1451 166 57 64 chr1 65774371 65774685 -216418979 + AluJb SINE Alu 1 312 0 419 331 91 36 chr1 65774871 65775146 -216418518 - L2 LINE L2 0 3313 3024 255 372 132 0 chr1 65775229 65775358 -216418306 + L2 LINE L2 3121 3266 -6 219 170 0 0 chr1 65776022 65776069 -216417595 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 391 209 239 12 chr1 65776134 65776297 -216417367 - MIR SINE MIR -17 245 46 240 326 51 31 chr1 65776467 65776565 -216417099 + L2 LINE L2 3141 3240 -32 383 315 72 38 chr1 65777110 65777345 -216416319 + MIR SINE MIR 20 262 0 243 324 72 43 chr1 65777448 65777587 -216416077 - L2 LINE L2 -5 3267 3125 238 293 12 12 chr1 65777643 65777725 -216415939 + MIR SINE MIR 68 149 -59 682 272 173 48 chr1 65777991 65778440 -216415224 + MLT1H LTR MaLR 1 545 -4 365 186 0 0 chr1 65778642 65778712 -216414952 - L1M3 LINE L1 -731 5437 5368 * 409 141 121 50 chr1 65778697 65778796 -216414868 + L1MB1 LINE L1 6062 6167 -1 318 188 0 203 chr1 65779450 65779588 -216414076 + MIR SINE MIR 141 250 -12 197 304 136 40 chr1 65780360 65780485 -216413179 + MIR3 SINE MIR 23 159 -49 288 292 201 0 chr1 65780492 65780636 -216413028 - MIR SINE MIR -27 235 63 24 32 0 0 chr1 65781105 65781136 -216412528 + AT_rich Low_complexity Low_complexity 1 31 0 867 126 0 0 chr1 65781136 65781255 -216412409 - AluSg/x SINE Alu -24 288 170 1924 201 11 48 chr1 65781638 65782017 -216411647 + MLT1A1 LTR MaLR 1 365 0 226 189 9 142 chr1 65782798 65782904 -216410760 - MIR SINE MIR -66 196 105 476 317 6 22 chr1 65783251 65783431 -216410233 + MIR SINE MIR 36 212 -50 1737 166 0 38 chr1 65784006 65784326 -216409338 - AluJo SINE Alu -4 308 1 1749 229 20 54 chr1 65784744 65785243 -216408421 + MLT1D LTR MaLR 24 505 0 1125 321 67 17 chr1 65785389 65786245 -216407419 + L2 LINE L2 2414 3313 0 225 83 0 0 chr1 65786270 65786306 -216407358 + (TA)n Simple_repeat Simple_repeat 1 36 0 324 316 22 59 chr1 65786306 65786432 -216407232 + MER5A DNA MER1_type 67 189 0 181 275 0 0 chr1 65786661 65786701 -216406963 - MIR SINE MIR -6 256 217 * 292 283 75 114 chr1 65786667 65786771 -216406893 - L2 LINE L2 -18 3254 3147 1623 171 120 24 chr1 65786771 65787104 -216406560 + MLT1A1 LTR MaLR 1 365 0 292 283 75 114 chr1 65787104 65787331 -216406333 - L2 LINE L2 -125 3147 2936 200 272 148 37 chr1 65787385 65787466 -216406198 - L2 LINE L2 0 3313 3224 * 411 277 30 0 chr1 65787459 65787560 -216406104 + MER5B DNA MER1_type 75 178 0 361 355 79 31 chr1 65788571 65788861 -216404803 + L2 LINE L2 2454 2757 -557 277 209 104 0 chr1 65789257 65789324 -216404340 + MIR SINE MIR 6 79 -183 188 296 19 0 chr1 65789323 65789377 -216404287 + MIR SINE MIR 191 245 -17 * 7629 92 6 2 chr1 65789561 65791352 -216402312 + L1PA7 LINE L1 4358 6149 -5 387 326 34 3 chr1 65791410 65791580 -216402084 + MIR SINE MIR 5 179 -50 410 338 42 46 chr1 65792893 65793133 -216400531 + MIR SINE MIR 13 251 -11 300 186 0 0 chr1 65793139 65793198 -216400466 + GA-rich Low_complexity Low_complexity 3 61 0 198 308 0 0 chr1 65794030 65794082 -216399582 - L2 LINE L2 0 3272 3221 451 305 77 34 chr1 65794659 65794892 -216398772 - MIR SINE MIR -1 261 19 209 369 24 0 chr1 65795089 65795173 -216398491 - MIR SINE MIR -81 127 42 720 35 0 0 chr1 65796017 65796104 -216397560 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 1906 128 3 11 chr1 65796753 65797035 -216396629 - AluSx SINE Alu -20 292 13 234 361 76 8 chr1 65797118 65797237 -216396427 + L2 LINE L2 3107 3233 -39 594 135 0 31 chr1 65797237 65797333 -216396331 + MLT1A2 LTR MaLR 14 106 -268 533 296 26 0 chr1 65797729 65797881 -216395783 - MIR SINE MIR -28 234 79 2193 180 17 8 chr1 65798039 65798401 -216395263 + MLT1A1 LTR MaLR 1 365 0 374 251 85 90 chr1 65798603 65798672 -216394992 - L3 LINE CR1 -111 1466 1398 589 297 69 12 chr1 65798672 65798918 -216394746 - MIR SINE MIR -1 261 2 374 251 85 90 chr1 65798918 65799059 -216394605 - L3 LINE CR1 -179 1398 1257 397 291 48 62 chr1 65799198 65799408 -216394256 - MIR SINE MIR -50 212 6 435 227 116 43 chr1 65800108 65800331 -216393333 + MIR SINE MIR 1 243 -19 844 250 59 10 chr1 65800880 65801084 -216392580 + MIR SINE MIR 21 234 -28 404 257 62 18 chr1 65802110 65802223 -216391441 - MIR SINE MIR -130 132 15 2105 148 7 0 chr1 65803413 65803717 -216389947 + AluSx SINE Alu 1 306 -6 486 248 28 0 chr1 65804045 65804154 -216389510 - MIR SINE MIR -71 191 80 2494 217 13 13 chr1 65804989 65805523 -216388141 + MER74A LTR ERVL 1 534 -24 2673 126 48 10 chr1 65805588 65806000 -216387664 - MSTA LTR MaLR 0 428 1 1731 136 43 54 chr1 65806008 65806415 -216387249 + L1MCa LINE L1 1328 1878 -4548 539 256 186 6 chr1 65806618 65806774 -216386890 - MER5A DNA MER1_type 0 189 6 235 233 41 14 chr1 65806774 65806786 -216386878 + MER3 DNA MER1_type 36 49 -160 308 177 25 38 chr1 65806786 65806865 -216386799 - MER3 DNA MER1_type 0 209 132 775 117 0 42 chr1 65806872 65806992 -216386672 + AluSg/x SINE Alu 189 303 -7 592 215 0 0 chr1 65807028 65807135 -216386529 - MER3 DNA MER1_type -93 116 10 1830 189 147 76 chr1 65807266 65807795 -216385869 + MLT1F1 LTR MaLR 1 567 0 684 242 81 10 chr1 65807795 65807993 -216385671 - MIR SINE MIR -43 219 8 348 176 59 209 chr1 65808085 65808153 -216385511 + MER5B DNA MER1_type 17 94 -84 1533 38 0 5 chr1 65808153 65808338 -216385326 + AluY SINE Alu 123 306 -5 348 176 59 209 chr1 65808338 65808456 -216385208 + MER5B DNA MER1_type 94 175 -3 206 281 31 16 chr1 65808505 65808569 -216385095 + MER5A DNA MER1_type 124 188 -1 3713 72 5 5 chr1 65809318 65809762 -216383902 + MLT2A1 LTR ERVL 1 444 0 610 221 22 7 chr1 65809984 65810120 -216383544 - MER5B DNA MER1_type -16 162 25 198 238 48 16 chr1 65810065 65810128 -216383536 + MER5A DNA MER1_type 109 173 -16 * 203 286 193 8 chr1 65810431 65810550 -216383114 + MER5B DNA MER1_type 3 143 -35 299 233 68 0 chr1 65811409 65811482 -216382182 + HAL1 LINE L1 54 131 -2376 332 344 95 14 chr1 65811486 65811707 -216381957 + HAL1 LINE L1 432 670 -1837 7086 202 18 4 chr1 65811843 65813641 -216380023 - L1PA15-16 LINE L1 -5466 1383 12 1115 286 117 0 chr1 65813660 65814010 -216379654 + L2 LINE L2 2224 2614 -700 472 304 88 21 chr1 65814363 65814557 -216379107 + MIR SINE MIR 11 217 -45 250 303 178 46 chr1 65816330 65816482 -216377182 + MIR SINE MIR 18 189 -73 360 0 0 0 chr1 65817739 65817779 -216375885 + (TG)n Simple_repeat Simple_repeat 2 41 0 821 60 30 15 chr1 65817782 65817915 -216375749 + (GAAA)n Simple_repeat Simple_repeat 4 138 0 1285 265 46 88 chr1 65818351 65818978 -216374686 + L1MCb LINE L1 1 601 -5444 1067 242 68 3 chr1 65819035 65819357 -216374307 + L1MCb LINE L1 571 913 -5132 3212 160 27 68 chr1 65819683 65820534 -216373130 + LTR1 LTR ERV1 9 785 0 1878 153 92 33 chr1 65822041 65822565 -216371099 - MLT2A2 LTR ERVL 0 554 1 2857 7 0 0 chr1 65822901 65823207 -216370457 + AluYa5 SINE Alu 1 306 -5 894 229 17 6 chr1 65823346 65823521 -216370143 + MER45A DNA AcHobo 1 177 -1 944 162 0 69 chr1 65823767 65823940 -216369724 - MSTD LTR MaLR 0 396 236 285 329 134 51 chr1 65824284 65824576 -216369088 - L2 LINE L2 -24 3248 2933 351 326 0 0 chr1 65824638 65824730 -216368934 - L2 LINE L2 -37 3276 3185 286 270 99 36 chr1 65824746 65824857 -216368807 + MLT1G1 LTR MaLR 16 133 -462 1484 231 177 19 chr1 65825054 65825539 -216368125 - MLT1G1 LTR MaLR -12 583 22 296 162 73 29 chr1 65825591 65825659 -216368005 + MLT1H LTR MaLR 454 524 -25 1275 160 5 0 chr1 65825941 65826147 -216367517 + AluJo SINE Alu 68 274 -38 1100 92 0 6 chr1 65826147 65826311 -216367353 + (GGAA)n Simple_repeat Simple_repeat 2 164 0 2097 142 0 13 chr1 65826423 65826739 -216366925 + AluSq SINE Alu 1 312 -1 4742 165 56 8 chr1 65827536 65828395 -216365269 - MER54A LTR ERVL 0 901 2 426 250 62 131 chr1 65828701 65828945 -216364719 - MIR SINE MIR -31 231 5 1046 171 4 83 chr1 65829041 65829068 -216364596 + L1MC3 LINE L1 7565 7593 -192 1962 137 53 0 chr1 65829068 65829353 -216364311 + AluSx SINE Alu 1 300 -12 1046 171 4 83 chr1 65829353 65829565 -216364099 + L1MC3 LINE L1 7593 7785 0 409 219 37 0 chr1 65829721 65829803 -216363861 + LTR16C LTR ERVL 407 491 0 668 300 76 38 chr1 65830276 65830619 -216363045 - MLT1I LTR MaLR -1 408 53 180 0 0 0 chr1 65830823 65830843 -216362821 + (A)n Simple_repeat Simple_repeat 1 20 0 266 281 123 9 chr1 65831354 65831468 -216362196 - MLT1L LTR MaLR -24 591 465 617 277 62 23 chr1 65831497 65831757 -216361907 - MLT1L LTR MaLR -221 394 125 6527 189 23 10 chr1 65832299 65834178 -216359486 + L1MB1 LINE L1 3999 5903 -265 444 328 128 30 chr1 65836535 65836932 -216356732 + L1MEd LINE L1 820 1255 -4864 1668 201 3 19 chr1 65836993 65837307 -216356357 + AluJb SINE Alu 3 311 -1 359 330 108 36 chr1 65837324 65837655 -216356009 + HAL1b LINE L1 327 1765 -726 203 0 0 36 chr1 65837689 65837717 -216355947 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2132 104 0 46 chr1 65837796 65838122 -216355542 + AluY SINE Alu 1 311 0 189 0 0 0 chr1 65838955 65838976 -216354688 + (T)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr1 65839055 65839091 -216354573 + AT_rich Low_complexity Low_complexity 1 36 0 629 286 75 36 chr1 65840165 65840417 -216353247 - MER115 DNA AcHobo -72 621 360 1042 224 0 10 chr1 65840564 65840765 -216352899 - MLT1C LTR MaLR 0 467 269 193 193 35 35 chr1 65841459 65841516 -216352148 - MER5A DNA MER1_type -120 69 13 250 294 143 0 chr1 65841535 65841647 -216352017 + MIR SINE MIR 34 159 -62 476 189 0 0 chr1 65841792 65841882 -216351782 + L1MA8 LINE L1 6197 6286 -5 2582 151 44 22 chr1 65843149 65843645 -216350019 + L1MA7 LINE L1 5734 6240 -51 1511 253 44 5 chr1 65844304 65844687 -216348977 + MLT1H LTR MaLR 9 406 -143 279 275 29 0 chr1 65845225 65845294 -216348370 + polypurine Low_complexity Low_complexity 5 75 0 28 29 0 0 chr1 65845544 65845579 -216348085 + AT_rich Low_complexity Low_complexity 1 35 0 608 154 19 0 chr1 65845886 65845990 -216347674 - MLT1C LTR MaLR -361 106 1 387 225 0 113 chr1 65846077 65846221 -216347443 + HAL1 LINE L1 2212 2338 -169 1626 126 4 0 chr1 65846221 65846452 -216347212 + AluSg/x SINE Alu 81 312 0 387 225 0 113 chr1 65846452 65846467 -216347197 + HAL1 LINE L1 2338 2353 -154 327 141 14 84 chr1 65846467 65846512 -216347152 + LTR67 LTR ERVL 492 532 -25 1621 230 100 66 chr1 65846512 65847043 -216346621 + MLT1H LTR MaLR 1 549 0 327 141 14 84 chr1 65847043 65847068 -216346596 + LTR67 LTR ERVL 532 557 0 2922 3 0 0 chr1 65847558 65847869 -216345795 - AluYa5 SINE Alu 0 311 1 927 172 21 47 chr1 65848395 65848587 -216345077 + LTR41 LTR ERVL 1 187 -586 901 222 48 77 chr1 65848734 65849045 -216344619 + LTR41 LTR ERVL 465 766 -7 965 168 0 19 chr1 65849112 65849273 -216344391 - FRAM SINE Alu -24 152 1 656 249 127 65 chr1 65849280 65849666 -216343998 + L1ME3A LINE L1 5621 6030 -140 548 251 169 62 chr1 65851035 65851390 -216342274 + LTR33A LTR ERVL 122 514 -9 2551 131 16 11 chr1 65851486 65851867 -216341797 + L1PA15 LINE L1 5783 6165 0 3949 57 8 10 chr1 65851968 65852457 -216341207 + L1PA7 LINE L1 5667 6154 0 802 214 0 18 chr1 65852457 65852625 -216341039 + FRAM SINE Alu 1 162 -14 589 272 61 10 chr1 65852857 65853071 -216340593 + MIR SINE MIR 40 260 -2 25 0 0 0 chr1 65854183 65854208 -216339456 + AT_rich Low_complexity Low_complexity 1 25 0 1056 291 46 22 chr1 65855890 65856368 -216337296 - MLT1G3 LTR MaLR 0 595 12 1207 238 95 33 chr1 65856592 65857089 -216336575 - MLT1H1 LTR MaLR 0 555 3 344 261 9 54 chr1 65857522 65857633 -216336031 - L1ME LINE L1 -409 5712 5607 1089 181 9 37 chr1 65858691 65858906 -216334758 - MER3 DNA MER1_type 0 209 1 457 309 133 9 chr1 65859006 65859186 -216334478 - MIR SINE MIR 0 262 70 2127 95 0 0 chr1 65859534 65859797 -216333867 + AluSx SINE Alu 29 291 -21 4038 145 76 4 chr1 65860025 65860723 -216332941 - L1MA7 LINE L1 -9 6282 5535 231 194 15 45 chr1 65861532 65861599 -216332065 + L1ME4a LINE L1 5966 6030 -91 202 109 65 0 chr1 65862050 65862096 -216331568 + (TA)n Simple_repeat Simple_repeat 1 49 0 210 340 58 13 chr1 65862149 65862305 -216331359 + L3 LINE CR1 1090 1252 -325 264 203 17 0 chr1 65862561 65862620 -216331044 - MLT1F1 LTR MaLR -8 559 500 826 342 39 24 chr1 65862624 65863036 -216330628 + L1M3c LINE L1 5 422 -5719 2085 217 49 32 chr1 65863741 65864396 -216329268 + L1M3c LINE L1 960 1625 -4516 761 186 93 130 chr1 65864747 65864904 -216328760 - Charlie4a DNA MER1_type -1606 355 215 6763 84 18 16 chr1 65864904 65865977 -216327687 + L1PA13 LINE L1 4697 5778 -385 2551 43 0 7 chr1 65865977 65866277 -216327387 + AluY SINE Alu 3 300 -11 6763 84 18 16 chr1 65866277 65866653 -216327011 + L1PA13 LINE L1 5778 6152 -11 761 186 93 130 chr1 65866653 65866817 -216326847 - Charlie4a DNA MER1_type -1746 215 46 1445 142 18 0 chr1 65866891 65867110 -216326554 + AluJb SINE Alu 7 229 -83 977 244 24 41 chr1 65867213 65867504 -216326160 + L1ME3A LINE L1 5872 6157 -13 340 265 105 49 chr1 65868012 65868230 -216325434 - MIR SINE MIR -7 255 22 331 276 0 31 chr1 65868983 65869081 -216324583 - L2 LINE L2 0 3313 3219 538 252 43 0 chr1 65870089 65870228 -216323436 + MIR3 SINE MIR 4 148 -60 484 293 42 43 chr1 65870958 65871086 -216322578 + MIR SINE MIR 18 142 -120 2214 109 0 0 chr1 65871086 65871379 -216322285 + AluSx SINE Alu 3 295 -17 484 293 42 43 chr1 65871379 65871466 -216322198 + MIR SINE MIR 142 228 -34 3601 149 92 36 chr1 65872024 65872697 -216320967 + MER50 LTR ERV1 1 711 -23 212 361 84 0 chr1 65872954 65873037 -216320627 - L2 LINE L2 -27 3245 3156 557 261 48 24 chr1 65873282 65873447 -216320217 + MIR SINE MIR 23 191 -71 247 292 71 39 chr1 65873453 65873486 -216320178 + MIR SINE MIR 92 122 -140 1921 107 99 0 chr1 65873486 65873758 -216319906 - AluSx SINE Alu 0 312 14 247 292 71 39 chr1 65873758 65873878 -216319786 + MIR SINE MIR 122 250 -12 789 189 83 12 chr1 65874404 65874573 -216319091 + MER5A DNA MER1_type 1 181 -8 1225 156 19 14 chr1 65874650 65874861 -216318803 + MER20 DNA MER1_type 8 219 0 201 215 25 13 chr1 65874914 65874993 -216318671 + GA-rich Low_complexity Low_complexity 1 80 0 439 253 0 19 chr1 65875015 65875177 -216318487 + GA-rich Low_complexity Low_complexity 4 162 0 252 303 9 47 chr1 65875595 65875663 -216318001 + CT-rich Low_complexity Low_complexity 1 70 -625 2197 130 0 9 chr1 65875663 65875978 -216317686 - AluSx SINE Alu 0 312 1 252 303 9 47 chr1 65875978 65876317 -216317347 + CT-rich Low_complexity Low_complexity 70 695 0 2149 123 13 0 chr1 65876366 65876667 -216316997 - AluSx SINE Alu -7 305 1 1668 241 87 21 chr1 65876830 65877304 -216316360 + MLT1D LTR MaLR 1 505 0 192 40 0 0 chr1 65877788 65877813 -216315851 + (GA)n Simple_repeat Simple_repeat 2 26 0 392 357 43 19 chr1 65877902 65878112 -216315552 + MIR SINE MIR 20 234 -28 323 361 30 0 chr1 65878167 65878333 -216315331 + MIR SINE MIR 74 244 -18 328 254 41 95 chr1 65879292 65879461 -216314203 - MIR SINE MIR -72 190 31 336 274 96 15 chr1 65879695 65879830 -216313834 + MIR SINE MIR 99 244 -18 22 0 0 0 chr1 65880052 65880074 -216313590 + AT_rich Low_complexity Low_complexity 1 22 0 606 230 6 12 chr1 65880182 65880343 -216313321 - L1MB8 LINE L1 0 6178 6019 630 246 48 48 chr1 65880908 65881115 -216312549 - MIR SINE MIR -35 227 21 359 297 8 23 chr1 65881172 65881300 -216312364 + L2 LINE L2 3175 3300 -13 418 270 63 16 chr1 65881351 65881477 -216312187 + MIR SINE MIR 58 189 -73 27 49 0 0 chr1 65882327 65882368 -216311296 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr1 65883023 65883054 -216310610 + AT_rich Low_complexity Low_complexity 1 31 0 549 278 118 1 chr1 65883185 65883372 -216310292 - MIR SINE MIR -26 236 30 311 294 67 8 chr1 65884229 65884348 -216309316 - MIR SINE MIR -74 188 63 182 290 122 47 chr1 65884734 65884841 -216308823 + L2 LINE L2 3152 3266 -47 779 293 19 0 chr1 65884986 65885194 -216308470 - MIR SINE MIR -13 249 38 374 228 24 71 chr1 65885237 65885364 -216308300 - MIR SINE MIR -31 231 111 474 251 30 74 chr1 65885834 65886037 -216307627 - MER117 DNA MER1_type 0 197 4 208 259 86 25 chr1 65886068 65886149 -216307515 - MIR SINE MIR -70 192 107 180 321 0 0 chr1 65886430 65886483 -216307181 - MIR3 SINE MIR -19 189 137 519 198 74 8 chr1 65886503 65886624 -216307040 - MIR SINE MIR -71 191 63 2196 113 6 16 chr1 65886787 65887098 -216306566 - AluSx SINE Alu -4 308 1 267 296 20 31 chr1 65887426 65887524 -216306140 - MLT1J2 LTR MaLR -121 329 233 503 15 0 30 chr1 65887541 65887608 -216306056 + L1PA2 LINE L1 6089 6153 -2 1572 203 25 31 chr1 65887610 65887965 -216305699 + MLT1A1 LTR MaLR 13 365 0 333 151 139 58 chr1 65888235 65888321 -216305343 + MLT1J2 LTR MaLR 356 448 -2 761 222 43 0 chr1 65888814 65888976 -216304688 - MER63A DNA MER1_type 0 210 42 246 156 0 0 chr1 65888976 65889021 -216304643 + T-rich Low_complexity Low_complexity 1 45 0 362 345 32 32 chr1 65889088 65889343 -216304321 - MIR SINE MIR -2 260 8 250 406 34 23 chr1 65889694 65889869 -216303795 + L2 LINE L2 3093 3269 -3 288 228 8 36 chr1 65890756 65890893 -216302771 + MER5B DNA MER1_type 1 176 -2 364 269 159 46 chr1 65890894 65891177 -216302487 + MLT1L LTR MaLR 147 461 -154 929 230 48 14 chr1 65891259 65891468 -216302196 - MER58A DNA MER1_type -2 222 7 556 257 42 64 chr1 65891532 65891797 -216301867 + L2 LINE L2 2219 2477 -837 344 296 118 11 chr1 65891993 65892175 -216301489 - MIR SINE MIR -6 256 52 259 287 160 27 chr1 65892654 65892804 -216300860 + MIR SINE MIR 15 184 -78 270 348 0 14 chr1 65893251 65893389 -216300275 + CT-rich Low_complexity Low_complexity 1 136 0 844 284 0 5 chr1 65894056 65894257 -216299407 + MIR3 SINE MIR 3 202 -6 24 0 0 0 chr1 65894320 65894344 -216299320 + AT_rich Low_complexity Low_complexity 1 24 0 478 281 93 7 chr1 65894592 65894806 -216298858 - MIR SINE MIR -6 256 30 303 289 81 67 chr1 65894842 65894991 -216298673 + L3 LINE CR1 1426 1576 -1 1980 119 3 51 chr1 65895823 65896135 -216297529 + AluSx SINE Alu 1 297 -15 761 251 26 10 chr1 65896392 65896587 -216297077 - MIR SINE MIR -23 239 42 253 283 266 0 chr1 65897534 65897647 -216296017 + MIR3 SINE MIR 34 176 -32 548 286 27 17 chr1 65898458 65898627 -216295037 + MER5B DNA MER1_type 24 178 0 1447 166 57 99 chr1 65899725 65900120 -216293544 + MLT2D LTR ERVL 1 516 -38 271 290 11 11 chr1 65900137 65900209 -216293455 + CT-rich Low_complexity Low_complexity 2 76 -18 192 40 0 0 chr1 65900209 65900234 -216293430 + (CA)n Simple_repeat Simple_repeat 1 25 0 271 290 11 11 chr1 65900234 65900254 -216293410 + CT-rich Low_complexity Low_complexity 75 94 0 301 333 13 20 chr1 65900359 65900512 -216293152 + MER5B DNA MER1_type 25 176 -2 24 0 0 0 chr1 65900634 65900658 -216293006 + AT_rich Low_complexity Low_complexity 1 24 0 442 70 28 0 chr1 65900721 65900792 -216292872 + (TA)n Simple_repeat Simple_repeat 2 74 0 212 368 68 0 chr1 65900839 65900972 -216292692 + L2 LINE L2 2715 2856 -458 182 299 150 47 chr1 65901008 65901135 -216292529 + L2 LINE L2 2914 3053 -219 370 314 81 53 chr1 65901386 65901582 -216292082 + MIR SINE MIR 6 196 -66 759 142 44 0 chr1 65902354 65902467 -216291197 - FLAM_C SINE Alu -15 118 1 431 275 105 40 chr1 65902696 65902896 -216290768 + MIR SINE MIR 16 228 -34 224 313 0 0 chr1 65903096 65903169 -216290495 + MIR SINE MIR 69 142 -66 309 300 150 19 chr1 65903197 65903255 -216290409 - MIR SINE MIR -48 214 165 3394 171 53 37 chr1 65903255 65903898 -216289766 + MER82 DNA MER2_type 1 653 0 309 300 150 19 chr1 65903898 65903999 -216289665 - MIR SINE MIR -97 165 34 452 261 137 53 chr1 65904547 65904849 -216288815 + L1ME4a LINE L1 5592 5950 -171 2180 119 0 3 chr1 65904849 65905151 -216288513 + AluSx SINE Alu 3 303 -9 452 261 137 53 chr1 65905151 65905323 -216288341 + L1ME4a LINE L1 5950 6106 -15 258 306 51 10 chr1 65905577 65905675 -216287989 + L2 LINE L2 3170 3271 -1 269 287 28 117 chr1 65905940 65906222 -216287442 - L2 LINE L2 -212 3060 2804 450 0 0 0 chr1 65906913 65906963 -216286701 + (TG)n Simple_repeat Simple_repeat 2 51 0 500 238 146 24 chr1 65906984 65907148 -216286516 + MER5A DNA MER1_type 4 187 -2 281 209 104 15 chr1 65907188 65907255 -216286409 + L2 LINE L2 3169 3241 -31 385 236 75 9 chr1 65907267 65907373 -216286291 + MIR SINE MIR 117 229 -33 286 299 144 17 chr1 65907443 65907650 -216286014 - MIR SINE MIR -29 233 3 759 247 148 32 chr1 65907960 65908243 -216285421 + LTR33 LTR ERVL 1 316 -205 1333 281 81 55 chr1 65908893 65909459 -216284205 + MLT1E LTR MaLR 13 593 0 1494 165 25 53 chr1 65909831 65909986 -216283678 - AluJb SINE Alu -35 277 132 234 0 0 0 chr1 65909986 65910012 -216283652 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1494 165 25 53 chr1 65910012 65910141 -216283523 - AluJb SINE Alu -180 132 1 581 275 111 29 chr1 65910708 65911169 -216282495 + LTR33 LTR ERVL 2 518 -3 216 283 141 0 chr1 65911223 65911315 -216282349 + MIR SINE MIR 158 262 0 643 194 104 0 chr1 65911398 65911532 -216282132 + MLT1C LTR MaLR 6 153 -314 1354 222 52 13 chr1 65911579 65911885 -216281779 + MLT1C LTR MaLR 142 459 -8 216 313 100 31 chr1 65911931 65912091 -216281573 + L2 LINE L2 2916 3086 -186 370 310 31 0 chr1 65912274 65912403 -216281261 - MIR SINE MIR 0 262 130 776 254 30 17 chr1 65913326 65913558 -216280106 + MIR SINE MIR 14 248 -14 197 346 94 24 chr1 65913662 65913789 -216279875 - L2 LINE L2 -1 3271 3136 576 268 66 30 chr1 65913823 65914021 -216279643 - MIR SINE MIR -51 211 7 251 174 6 234 chr1 65915320 65915361 -216278303 + MIR SINE MIR 77 126 -136 2293 174 42 20 chr1 65915361 65915814 -216277850 - MLT1C LTR MaLR -4 463 1 251 174 6 234 chr1 65915814 65915939 -216277725 + MIR SINE MIR 126 205 -57 223 278 42 14 chr1 65916067 65916139 -216277525 - MIR3 SINE MIR -27 181 108 234 344 11 0 chr1 65916364 65916457 -216277207 - MIR SINE MIR -71 137 44 307 250 104 0 chr1 65917093 65917189 -216276475 - L2 LINE L2 0 3313 3208 221 263 33 61 chr1 65917631 65917765 -216275899 + MIR SINE MIR 15 148 -63 269 287 60 33 chr1 65917797 65917947 -216275717 - MIR SINE MIR -44 218 65 196 210 62 37 chr1 65918550 65918631 -216275033 - L2 LINE L2 -27 3245 3163 2246 44 44 4 chr1 65918787 65919118 -216274546 - AluY SINE Alu 0 342 1 376 256 12 136 chr1 65919118 65919376 -216274288 - MIR SINE MIR 0 262 37 424 164 24 40 chr1 65919376 65919545 -216274119 - L1MA9 LINE L1 -85 6215 6054 1170 268 81 24 chr1 65919750 65920171 -216273493 - LTR16A LTR ERVL -5 445 1 821 245 85 5 chr1 65920604 65920816 -216272848 - MIR SINE MIR -32 230 2 292 281 116 50 chr1 65920928 65921202 -216272462 + L2 LINE L2 2666 3018 -254 181 259 17 0 chr1 65921374 65921432 -216272232 + L2 LINE L2 3207 3265 -7 409 129 0 0 chr1 65921857 65921919 -216271745 + MSTB1 LTR MaLR 371 432 0 224 273 30 15 chr1 65921924 65921990 -216271674 + L2 LINE L2 3243 3309 -4 2408 60 0 0 chr1 65922072 65922379 -216271285 + AluY SINE Alu 1 307 0 267 370 34 82 chr1 65922692 65923132 -216270532 + L2 LINE L2 2850 3268 -4 366 321 88 6 chr1 65923137 65923296 -216270368 - MIR SINE MIR -71 191 20 289 376 0 0 chr1 65924209 65924374 -216269290 + (TGG)n Simple_repeat Simple_repeat 1 165 0 327 128 0 0 chr1 65925511 65925558 -216268106 + Charlie5 DNA MER1_type 25 71 -2541 664 128 23 15 chr1 65925580 65925713 -216267951 + Charlie5 DNA MER1_type 2469 2602 -10 945 250 82 43 chr1 65926193 65926585 -216267079 - MLT1I LTR MaLR 0 409 3 555 90 0 0 chr1 65927237 65927315 -216266349 + (TA)n Simple_repeat Simple_repeat 2 79 0 511 264 30 24 chr1 65927689 65927856 -216265808 - MLT1L LTR MaLR -18 597 430 2514 70 0 10 chr1 65928503 65928815 -216264849 + AluY SINE Alu 3 311 0 239 217 0 0 chr1 65929233 65929279 -216264385 - MIR SINE MIR -11 251 206 308 253 0 11 chr1 65929525 65929612 -216264052 - MIR SINE MIR -112 150 65 329 335 74 6 chr1 65929717 65929910 -216263754 - MIR SINE MIR -58 204 2 288 279 29 79 chr1 65930318 65930458 -216263206 - MIR SINE MIR -12 250 118 372 22 0 0 chr1 65931377 65931422 -216262242 + (TG)n Simple_repeat Simple_repeat 1 45 0 206 171 0 0 chr1 65931776 65931811 -216261853 - L3 LINE CR1 -1 1576 1542 728 236 16 68 chr1 65931860 65932110 -216261554 - L2 LINE L2 -2 3311 3075 278 274 35 9 chr1 65932277 65932390 -216261274 - MIR SINE MIR -15 247 132 462 321 22 0 chr1 65932426 65932563 -216261101 + MIR SINE MIR 47 186 -76 736 202 62 55 chr1 65932939 65933196 -216260468 - MIR SINE MIR 0 262 4 196 247 91 91 chr1 65933214 65933368 -216260296 + L2 LINE L2 2902 3055 -217 352 257 20 10 chr1 65933692 65933793 -216259871 + MIR SINE MIR 75 176 -86 290 259 227 28 chr1 65933818 65934034 -216259630 - MIR SINE MIR -2 260 2 750 264 56 0 chr1 65934142 65934373 -216259291 - LTR33A LTR ERVL -16 507 264 2289 108 0 0 chr1 65934639 65934926 -216258738 + AluSg SINE Alu 5 291 -19 195 291 55 0 chr1 65935205 65935260 -216258404 + L3 LINE CR1 1501 1558 -19 337 268 24 0 chr1 65936225 65936307 -216257357 + L2 LINE L2 3222 3305 -8 318 236 11 22 chr1 65936832 65936921 -216256743 - MER117 DNA MER1_type -65 132 45 460 285 64 60 chr1 65936998 65937247 -216256417 + MIR SINE MIR 12 261 -1 288 345 34 29 chr1 65937451 65937660 -216256004 - L2 LINE L2 -181 3091 2882 21 0 0 0 chr1 65938669 65938690 -216254974 + AT_rich Low_complexity Low_complexity 1 21 0 423 352 6 0 chr1 65938743 65938922 -216254742 - MIR SINE MIR -2 260 81 2281 189 74 17 chr1 65939087 65939611 -216254053 - MER74A LTR ERVL 0 558 5 205 300 44 0 chr1 65939711 65939801 -216253863 - MIR SINE MIR -167 95 2 232 390 0 0 chr1 65940001 65940078 -216253586 - MIR SINE MIR -154 108 32 213 159 0 23 chr1 65940537 65940581 -216253083 + (TAA)n Simple_repeat Simple_repeat 2 44 0 225 237 191 0 chr1 65940629 65940720 -216252944 - MIR SINE MIR -50 158 49 540 287 11 15 chr1 65941680 65941885 -216251779 + MIR SINE MIR 40 245 -17 26 0 0 0 chr1 65942106 65942132 -216251532 + AT_rich Low_complexity Low_complexity 1 26 0 216 286 0 0 chr1 65942501 65942571 -216251093 - MIR SINE MIR -57 151 82 240 329 93 27 chr1 65942624 65942849 -216250815 + L2 LINE L2 2986 3225 -88 191 303 45 0 chr1 65944027 65944093 -216249571 + MIR SINE MIR 111 179 -83 2133 159 58 22 chr1 65944558 65944973 -216248691 + MSTB1 LTR MaLR 1 430 -2 264 224 17 0 chr1 65944973 65945031 -216248633 + MSTB1-int LTR MaLR 3 61 -1590 1699 204 36 0 chr1 65945031 65945340 -216248324 + MSTB1 LTR MaLR 59 378 -54 8369 54 6 1 chr1 65945340 65946976 -216246688 + L1PA6 LINE L1 4350 5990 -164 1956 137 4 0 chr1 65947112 65947389 -216246275 - AluSg1 SINE Alu -31 278 1 221 237 68 0 chr1 65947469 65947528 -216246136 + L2 LINE L2 3210 3272 0 223 282 51 13 chr1 65948275 65948353 -216245311 + MIR SINE MIR 35 115 -147 306 280 21 11 chr1 65948513 65948606 -216245058 - MIR SINE MIR -158 104 11 219 289 0 62 chr1 65948730 65948827 -216244837 + MIR SINE MIR 60 150 -112 822 314 29 60 chr1 65948832 65949249 -216244415 - MLT1I LTR MaLR -2 407 4 566 291 12 0 chr1 65949551 65949723 -216243941 - MIR3 SINE MIR -2 206 33 234 261 80 72 chr1 65950172 65950310 -216243354 - L2 LINE L2 -220 3052 2914 960 273 131 22 chr1 65951183 65951633 -216242031 - L2 LINE L2 -2 3311 2813 320 241 58 23 chr1 65951701 65951788 -216241876 + MIR SINE MIR 103 192 -70 253 299 71 26 chr1 65952169 65952323 -216241341 + MIR SINE MIR 11 171 -91 325 167 26 0 chr1 65952332 65952410 -216241254 + (TA)n Simple_repeat Simple_repeat 1 80 0 1791 179 7 7 chr1 65952936 65953232 -216240432 - AluJo SINE Alu -12 300 5 2902 3 0 0 chr1 65953527 65953831 -216239833 - AluYa5 SINE Alu -7 304 1 248 205 26 51 chr1 65954276 65954354 -216239310 + L2 LINE L2 2899 2974 -339 379 314 9 81 chr1 65954554 65954764 -216238900 + MIR SINE MIR 20 214 -48 192 216 0 0 chr1 65955930 65955967 -216237697 - L2 LINE L2 -17 3255 3219 324 288 110 0 chr1 65956258 65956376 -216237288 - L2 LINE L2 -4 3268 3138 373 300 72 24 chr1 65956712 65956917 -216236747 + MIR SINE MIR 19 225 -37 312 272 87 0 chr1 65958386 65958489 -216235175 - L2 LINE L2 -185 3087 2976 381 271 26 52 chr1 65959042 65959197 -216234467 - MIR SINE MIR -56 206 56 595 269 135 73 chr1 65959503 65959533 -216234131 - MLT1L LTR MaLR -2 613 586 297 0 0 0 chr1 65959533 65959566 -216234098 + (CA)n Simple_repeat Simple_repeat 2 34 0 595 269 135 73 chr1 65959566 65959654 -216234010 - MLT1L LTR MaLR -29 586 505 2088 113 7 3 chr1 65959654 65959947 -216233717 + AluSg1 SINE Alu 3 296 -13 595 269 135 73 chr1 65959947 65960403 -216233261 - MLT1L LTR MaLR -110 505 2 2118 150 9 21 chr1 65960922 65961261 -216232403 + MER1B DNA MER1_type 1 335 -2 1023 238 110 47 chr1 65961471 65961962 -216231702 + LTR33A LTR ERVL 2 523 0 531 360 54 13 chr1 65962040 65962279 -216231385 + MIR SINE MIR 2 250 -12 441 221 184 44 chr1 65962365 65962523 -216231141 - MER5A DNA MER1_type -1 188 9 474 200 11 0 chr1 65962542 65962632 -216231032 - MER58B DNA MER1_type -4 337 247 420 297 47 0 chr1 65962693 65962821 -216230843 + L2 LINE L2 3138 3271 -1 500 260 77 33 chr1 65962877 65963058 -216230606 - MIR SINE MIR -13 249 61 861 238 21 0 chr1 65964717 65964910 -216228754 - MIR SINE MIR -30 232 36 395 304 39 130 chr1 65964931 65965339 -216228325 - L2 LINE L2 -79 3193 2823 1186 256 166 9 chr1 65965787 65966144 -216227520 - LTR33 LTR ERVL -5 516 74 2088 205 16 5 chr1 65966144 65966530 -216227134 + MLT1B LTR MaLR 1 390 0 1186 256 166 9 chr1 65966530 65966618 -216227046 - LTR33 LTR ERVL -447 74 1 382 284 74 34 chr1 65967265 65967441 -216226223 - MIR SINE MIR -33 229 47 388 267 144 22 chr1 65967485 65967665 -216225999 + L2 LINE L2 2933 3134 -179 2841 182 67 15 chr1 65967665 65968248 -216225416 - L1MB4 LINE L1 0 6180 5568 519 239 54 38 chr1 65968253 65968437 -216225227 + L2 LINE L2 3127 3313 0 2337 84 0 3 chr1 65968632 65968959 -216224705 + AluY SINE Alu 1 311 0 235 214 36 0 chr1 65969177 65969233 -216224431 + L2 LINE L2 3254 3311 -2 * 279 275 66 13 chr1 65969224 65969327 -216224337 + MIR SINE MIR 43 140 -68 571 267 203 0 chr1 65969624 65969811 -216223853 - MIR SINE MIR -22 240 16 645 199 47 43 chr1 65970915 65971110 -216222554 - MER58B DNA MER1_type 0 341 143 * 1023 219 15 33 chr1 65971094 65971368 -216222296 + MER96B DNA MER1_type? 149 417 0 184 233 0 23 chr1 65971820 65971863 -216221801 + L2 LINE L2 3268 3309 -4 412 322 13 27 chr1 65973063 65973229 -216220435 + MIR3 SINE MIR 5 166 -65 299 292 186 0 chr1 65973498 65973611 -216220053 - L2 LINE L2 0 3313 3180 1660 202 0 19 chr1 65973663 65974081 -216219583 - AluJo SINE Alu 0 412 1 243 304 49 16 chr1 65974089 65974259 -216219405 - MIR SINE MIR -62 146 19 522 147 17 17 chr1 65974419 65974535 -216219129 + CT-rich Low_complexity Low_complexity 4 119 0 387 267 92 68 chr1 65974558 65974764 -216218900 - L2 LINE L2 -1 3312 3102 2072 104 9 50 chr1 65974776 65975093 -216218571 + AluSg SINE Alu 1 304 -6 2239 125 0 0 chr1 65975203 65975514 -216218150 - AluSq SINE Alu -2 311 1 318 343 93 38 chr1 65975519 65975918 -216217746 - L2 LINE L2 -343 2971 2551 220 339 16 16 chr1 65976026 65976150 -216217514 - MIR SINE MIR -13 249 126 * 240 400 58 0 chr1 65976141 65976261 -216217403 + MER5A DNA MER1_type 63 189 0 229 307 31 39 chr1 65976924 65977051 -216216613 - LTR67 LTR ERVL 0 557 432 235 261 15 0 chr1 65977871 65977936 -216215728 + MLT1K LTR MaLR 521 586 -2 423 339 86 13 chr1 65978040 65978262 -216215402 - MIR SINE MIR -13 249 10 381 327 42 6 chr1 65978741 65978909 -216214755 + MIR3 SINE MIR 2 175 -33 312 250 125 0 chr1 65978973 65979101 -216214563 + MER103 DNA DNA 11 154 -12 752 325 80 27 chr1 65979306 65979997 -216213667 + L2 LINE L2 2537 3311 -2 193 354 0 0 chr1 65980010 65980058 -216213606 + L2 LINE L2 3139 3186 -86 254 234 121 48 chr1 65980103 65980227 -216213437 + MIR SINE MIR 124 256 -6 331 310 0 0 chr1 65980232 65980319 -216213345 + L2 LINE L2 3184 3270 -2 630 324 70 33 chr1 65980565 65980864 -216212800 - L2 LINE L2 -16 3256 2947 1986 119 3 51 chr1 65981562 65981873 -216211791 + AluSx SINE Alu 1 296 -16 842 233 85 0 chr1 65982109 65982298 -216211366 + MER58A DNA MER1_type 1 205 -19 8162 9 2 0 chr1 65982544 65983595 -216210069 + L1HS LINE L1 5101 6153 -2 493 309 144 32 chr1 65983642 65984017 -216209647 + MLT1J LTR MaLR 95 511 0 459 308 24 12 chr1 65984176 65984345 -216209319 + MIR3 SINE MIR 30 200 -8 34 0 0 0 chr1 65985440 65985474 -216208190 + AT_rich Low_complexity Low_complexity 1 34 0 1635 163 7 38 chr1 65985519 65985808 -216207856 - AluJo SINE Alu -32 280 1 222 91 0 0 chr1 65985844 65985877 -216207787 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 234 116 0 0 chr1 65986068 65986111 -216207553 + (TA)n Simple_repeat Simple_repeat 1 43 0 839 228 16 0 chr1 65986229 65986413 -216207251 + L1MB2 LINE L1 4674 4860 -1286 204 67 0 0 chr1 65986432 65986462 -216207202 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 43365 32 24 4 chr1 65986463 65989779 -216203885 - L1PA2 LINE L1 -17 6138 2641 2398 29 4 0 chr1 65989779 65990055 -216203609 - AluY SINE Alu 0 311 35 43365 32 24 4 chr1 65990055 65992751 -216200913 - L1PA2 LINE L1 -3514 2641 1 4883 171 43 14 chr1 65992751 65994048 -216199616 + L1MB2 LINE L1 4843 6168 -3 2542 78 0 0 chr1 65994746 65995055 -216198609 - AluSx SINE Alu -3 309 1 207 291 200 9 chr1 65995291 65995401 -216198263 - L2 LINE L2 -1 3271 3141 28 29 0 0 chr1 65995401 65995436 -216198228 + AT_rich Low_complexity Low_complexity 1 35 0 1059 99 87 12 chr1 65995772 65995933 -216197731 + THE1C LTR MaLR 1 173 -202 427 289 172 10 chr1 65996251 65996455 -216197209 - MIR SINE MIR -19 243 7 223 365 71 8 chr1 65997146 65997272 -216196392 + MIR SINE MIR 2 135 -127 521 312 29 18 chr1 65997864 65998034 -216195630 + MIR SINE MIR 20 191 -71 327 281 244 60 chr1 65998095 65998447 -216195217 + MLT1K LTR MaLR 10 426 -162 7972 11 2 9 chr1 65998574 65999478 -216194186 + L1HS LINE L1 5254 6151 -4 21 82 0 0 chr1 65999478 65999527 -216194137 + AT_rich Low_complexity Low_complexity 1 49 0 493 309 144 32 chr1 65999527 65999902 -216193762 + MLT1J LTR MaLR 95 511 0 459 308 24 12 chr1 66000061 66000230 -216193434 + MIR3 SINE MIR 30 200 -8 203 171 0 0 chr1 66001321 66001362 -216192302 + T-rich Low_complexity Low_complexity 1 41 0 1635 163 7 38 chr1 66001405 66001694 -216191970 - AluJo SINE Alu -32 280 1 222 91 0 0 chr1 66001730 66001763 -216191901 + (CTCA)n Simple_repeat Simple_repeat 1 33 0 234 116 0 0 chr1 66001954 66001997 -216191667 + (TA)n Simple_repeat Simple_repeat 1 43 0 311 220 9 73 chr1 66002133 66002242 -216191422 - L1MC4 LINE L1 -1339 6703 6602 203 194 0 0 chr1 66002246 66002282 -216191382 + (TA)n Simple_repeat Simple_repeat 2 37 0 435 275 77 6 chr1 66002285 66002467 -216191197 - MIR SINE MIR -64 198 4 439 149 126 11 chr1 66002478 66002565 -216191099 + MER3 DNA MER1_type 1 97 -112 232 232 82 0 chr1 66002555 66002628 -216191036 + Charlie5 DNA MER1_type 8 53 -2559 * 239 306 0 0 chr1 66002658 66002720 -216190944 + MIR SINE MIR 201 262 0 1173 216 41 67 chr1 66002751 66002805 -216190859 + MER46C DNA MER2_type 5 59 -279 372 43 0 0 chr1 66002805 66002851 -216190813 + (TG)n Simple_repeat Simple_repeat 1 46 0 1173 216 41 67 chr1 66002851 66003139 -216190525 + MER46C DNA MER2_type 59 338 0 340 276 92 20 chr1 66003739 66003891 -216189773 + MIR SINE MIR 81 243 -19 262 252 205 23 chr1 66003975 66004107 -216189557 + MIR SINE MIR 16 168 -70 314 235 235 7 chr1 66004805 66004954 -216188710 + L2 LINE L2 2678 2860 -454 340 272 41 84 chr1 66005893 66006091 -216187573 + MIR3 SINE MIR 30 212 -18 350 340 7 9 chr1 66006218 66006351 -216187313 + MIR SINE MIR 16 152 -56 312 324 56 7 chr1 66007222 66007364 -216186300 + MIR3 SINE MIR 38 186 -22 239 161 18 0 chr1 66007766 66007822 -216185842 + (TA)n Simple_repeat Simple_repeat 2 58 0 554 318 82 14 chr1 66008255 66008475 -216185189 + MIR SINE MIR 3 237 -25 22 0 0 0 chr1 66008667 66008689 -216184975 + AT_rich Low_complexity Low_complexity 1 22 0 1737 188 0 16 chr1 66009034 66009338 -216184326 - AluJb SINE Alu -13 299 1 31492 33 17 1 chr1 66010048 66016078 -216177586 - L1PA2 LINE L1 0 6155 1 317 287 0 46 chr1 66017571 66017679 -216175985 + MIR SINE MIR 44 146 -62 1486 210 5 106 chr1 66017684 66018050 -216175614 - MLT1A1 LTR MaLR -2 363 40 2474 95 87 20 chr1 66018050 66018451 -216175213 - MSTA LTR MaLR 0 428 1 1486 210 5 106 chr1 66018451 66018488 -216175176 - MLT1A1 LTR MaLR -325 40 1 480 122 12 0 chr1 66019136 66019218 -216174446 - L1PA16 LINE L1 -9 6157 6075 459 240 48 0 chr1 66019458 66019583 -216174081 + MIR3 SINE MIR 31 161 -47 188 307 91 23 chr1 66020427 66020515 -216173149 - MIR SINE MIR -157 105 12 308 326 22 61 chr1 66020764 66020945 -216172719 - MIR3 SINE MIR -4 204 31 663 141 28 23 chr1 66021026 66021203 -216172461 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 26 74 0 0 chr1 66021600 66021654 -216172010 + AT_rich Low_complexity Low_complexity 1 54 0 526 259 55 55 chr1 66021684 66021904 -216171760 - MIR SINE MIR -11 251 32 198 240 0 0 chr1 66022480 66022530 -216171134 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 2504 117 13 16 chr1 66022882 66023258 -216170406 - THE1C LTR MaLR 0 375 1 364 247 193 12 chr1 66023331 66023497 -216170167 + MIR SINE MIR 51 246 -16 415 292 42 21 chr1 66024212 66024356 -216169308 + L2 LINE L2 3126 3272 0 2518 139 17 31 chr1 66024519 66024744 -216168920 - MSTB LTR MaLR 0 408 201 2742 102 3 0 chr1 66024744 66025107 -216168557 - THE1B LTR MaLR 0 364 1 2518 139 17 31 chr1 66025107 66025306 -216168358 - MSTB LTR MaLR -207 201 1 382 288 33 33 chr1 66025307 66025460 -216168204 - L2 LINE L2 -230 3042 2890 863 172 15 93 chr1 66026519 66026723 -216166941 + MER5A DNA MER1_type 1 188 -1 566 282 124 0 chr1 66028059 66028261 -216165403 - MIR SINE MIR -2 260 34 293 309 18 9 chr1 66028277 66028387 -216165277 - MIR SINE MIR -65 143 33 471 301 7 0 chr1 66028966 66029109 -216164555 + MIR SINE MIR 112 255 -7 398 195 11 23 chr1 66029173 66029260 -216164404 - MIR3 SINE MIR -42 166 81 2591 142 14 24 chr1 66029443 66029866 -216163798 + Tigger2a DNA MER2_type 16 434 0 2040 155 51 45 chr1 66029866 66030338 -216163326 - L1MA9 LINE L1 -77 6235 5761 609 103 21 41 chr1 66030395 66030492 -216163172 - L1MA9 LINE L1 -524 5788 5694 * 1262 134 0 100 chr1 66030491 66030617 -216163047 + L1M2 LINE L1 5441 5578 -713 2464 96 0 0 chr1 66030617 66030920 -216162744 + AluSx SINE Alu 1 303 -9 2325 73 17 0 chr1 66030930 66031217 -216162447 + AluY SINE Alu 2 293 -18 1262 134 0 100 chr1 66031217 66031318 -216162346 + L1M2 LINE L1 5587 5655 -636 357 296 60 52 chr1 66031319 66031569 -216162095 - MIR SINE MIR -6 256 5 832 325 30 30 chr1 66031773 66032115 -216161549 + L2 LINE L2 2556 2898 -415 2575 102 5 27 chr1 66032115 66032487 -216161177 - THE1B LTR MaLR 0 364 1 832 325 30 30 chr1 66032487 66032731 -216160933 + L2 LINE L2 2898 3141 -172 550 287 92 7 chr1 66033621 66033841 -216159823 - MIR SINE MIR -12 250 16 6878 35 1 7 chr1 66034279 66035095 -216158569 - L1PA5 LINE L1 0 6154 5344 430 319 95 63 chr1 66035273 66035621 -216158043 - L2 LINE L2 -3 3269 2911 278 309 72 7 chr1 66036068 66036207 -216157457 + MIR SINE MIR 47 194 -68 200 292 183 15 chr1 66036394 66036531 -216157133 - MIR SINE MIR -50 212 53 188 361 65 9 chr1 66036739 66036847 -216156817 + L2 LINE L2 3159 3272 0 258 356 48 52 chr1 66038030 66038045 -216155619 - L2 LINE L2 -38 3234 3220 306 0 0 0 chr1 66038045 66038079 -216155585 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 258 356 48 52 chr1 66038079 66038333 -216155331 - L2 LINE L2 -52 3220 2966 1390 232 212 43 chr1 66038383 66038852 -216154812 - LTR50 LTR ERVL 0 795 407 852 177 135 10 chr1 66038852 66039044 -216154620 + MER20 DNA MER1_type 1 216 -3 1390 232 212 43 chr1 66039044 66039254 -216154410 - LTR50 LTR ERVL -388 407 1 237 276 76 48 chr1 66039783 66039888 -216153776 - MIR3 SINE MIR -46 162 55 251 275 120 85 chr1 66040097 66040355 -216153309 - L2 LINE L2 -107 3165 2899 217 304 69 39 chr1 66040467 66040569 -216153095 + MIR SINE MIR 56 160 -102 269 246 46 0 chr1 66041443 66041508 -216152156 - L2 LINE L2 -16 3256 3189 542 246 156 6 chr1 66042673 66042852 -216150812 + MIR SINE MIR 22 227 -35 926 229 72 30 chr1 66042875 66043180 -216150484 + L1ME3 LINE L1 5810 6127 -35 201 370 28 0 chr1 66043394 66043502 -216150162 - MIR SINE MIR -62 146 36 199 258 30 30 chr1 66043948 66044014 -216149650 - L2 LINE L2 -12 3301 3236 235 289 231 0 chr1 66044758 66044879 -216148785 - L2 LINE L2 -1 3271 3123 191 225 0 0 chr1 66045132 66045172 -216148492 - MIR SINE MIR -10 252 213 387 287 165 0 chr1 66045230 66045394 -216148270 - MIR SINE MIR -59 203 13 590 309 79 10 chr1 66045443 66045734 -216147930 - L2 LINE L2 -555 2759 2449 248 294 0 24 chr1 66045923 66046008 -216147656 + CT-rich Low_complexity Low_complexity 3 85 0 271 253 55 0 chr1 66046035 66046126 -216147538 - HAL1b LINE L1 -3 1345 1250 1072 164 75 0 chr1 66046462 66046663 -216147001 + MER20 DNA MER1_type 1 216 -3 531 234 198 6 chr1 66046701 66046868 -216146796 - LTR50 LTR ERVL -596 199 1 297 311 57 23 chr1 66046991 66047168 -216146496 + L1M4b LINE L1 17 199 -6660 189 0 0 0 chr1 66047782 66047803 -216145861 + (A)n Simple_repeat Simple_repeat 1 21 0 197 319 43 11 chr1 66048348 66048442 -216145222 - L3 LINE CR1 -25 1552 1456 531 314 106 21 chr1 66048506 66048789 -216144875 + Charlie8 DNA MER1_type 31 337 -2080 476 307 128 5 chr1 66049438 66049656 -216144008 - MIR SINE MIR -12 250 6 2083 213 51 80 chr1 66049740 66050329 -216143335 - L1MB7 LINE L1 0 6184 5617 1823 151 22 19 chr1 66050329 66050640 -216143024 - AluSx SINE Alu 0 312 1 2083 213 51 80 chr1 66050640 66050750 -216142914 - L1MB7 LINE L1 -567 5617 5505 6104 72 26 39 chr1 66050752 66051589 -216142075 + LTR12 LTR ERV1 1 826 0 8376 122 31 1 chr1 66051589 66052796 -216140868 + HERV9 LTR ERV1 1 1243 -7156 30915 87 12 6 chr1 66052798 66056872 -216136792 + HERV9 LTR ERV1 1086 5184 -3215 9881 87 5 16 chr1 66056842 66058194 -216135470 + HERV9 LTR ERV1 7062 8399 0 * 6207 67 5 63 chr1 66058194 66059071 -216134593 + LTR12 LTR ERV1 1 826 0 711 195 113 11 chr1 66059071 66059256 -216134408 - L1MB7 LINE L1 -676 5502 5299 286 174 47 58 chr1 66059302 66059388 -216134276 - MIR SINE MIR -111 151 67 520 264 102 64 chr1 66059429 66059743 -216133921 + MER102b DNA MER1_type 3 328 -13 1179 174 191 55 chr1 66060025 66060290 -216133374 - MSTD LTR MaLR -2 394 70 2389 81 7 0 chr1 66060290 66060587 -216133077 + AluY SINE Alu 1 299 -12 1179 174 191 55 chr1 66060587 66060666 -216132998 - MSTD LTR MaLR -326 70 3 343 277 16 37 chr1 66060678 66060821 -216132843 - MIR SINE MIR -66 142 17 255 293 13 0 chr1 66060877 66060952 -216132712 + L2 LINE L2 3237 3312 -1 191 310 28 0 chr1 66061526 66061597 -216132067 + MIR SINE MIR 110 182 -80 219 220 0 0 chr1 66061886 66061936 -216131728 + (CATA)n Simple_repeat Simple_repeat 4 53 0 648 217 0 0 chr1 66061938 66062058 -216131606 + MLT1B LTR MaLR 1 120 -270 477 277 60 27 chr1 66062226 66062410 -216131254 - MER58C DNA MER1_type 0 215 26 5238 237 39 51 chr1 66062420 66063446 -216130218 - L1M4 LINE L1 -2007 4637 3600 1241 223 115 19 chr1 66063446 66063760 -216129904 - MER2 DNA MER2_type 0 344 1 5238 237 39 51 chr1 66063760 66063862 -216129802 - L1M4 LINE L1 -3044 3600 3498 1940 167 3 6 chr1 66063862 66064186 -216129478 - AluJo SINE Alu 0 323 1 5238 237 39 51 chr1 66064186 66067092 -216126572 - L1M4 LINE L1 -3146 3498 528 407 270 25 65 chr1 66067221 66067421 -216126243 - L1M4b LINE L1 -5451 1408 1217 59 46 0 0 chr1 66067833 66067920 -216125744 + AT_rich Low_complexity Low_complexity 1 87 0 180 0 0 0 chr1 66068660 66068680 -216124984 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr1 66069145 66069170 -216124494 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 346 292 6 0 chr1 66069380 66069489 -216124175 + MIR SINE MIR 38 148 -62 431 324 89 56 chr1 66069587 66070016 -216123648 + LTR67 LTR ERVL 106 548 -9 188 345 35 26 chr1 66070655 66070768 -216122896 - MIR SINE MIR -114 148 35 1421 190 6 61 chr1 66070768 66071079 -216122585 + AluJo SINE Alu 1 294 -18 1958 145 3 0 chr1 66071157 66071470 -216122194 - AluSq SINE Alu 0 317 4 607 205 60 26 chr1 66071478 66071504 -216122160 + MER58C DNA MER1_type 50 74 -2346 2177 127 0 0 chr1 66071504 66071803 -216121861 - AluSx SINE Alu -13 299 1 607 205 60 26 chr1 66071803 66071927 -216121737 + MER58C DNA MER1_type 74 205 -10 188 366 28 0 chr1 66072092 66072163 -216121501 + L3 LINE CR1 1503 1575 -2 229 268 0 0 chr1 66072977 66073033 -216120631 - MIR SINE MIR -121 141 86 252 336 53 44 chr1 66073339 66073660 -216120004 + LTR16C LTR ERVL 158 481 -10 270 286 143 0 chr1 66073670 66073754 -216119910 + MER5A DNA MER1_type 94 189 0 648 206 175 6 chr1 66074793 66074953 -216118711 - MIR SINE MIR 0 262 76 254 308 48 10 chr1 66075098 66075202 -216118462 - MIR SINE MIR -81 127 20 357 252 114 8 chr1 66075334 66075457 -216118207 + L2 LINE L2 3137 3272 0 366 303 23 23 chr1 66075588 66075720 -216117944 - MIR SINE MIR -102 160 29 1153 138 94 65 chr1 66075727 66075864 -216117800 + L1MB3 LINE L1 5896 6028 -155 3377 122 7 73 chr1 66075864 66076452 -216117212 - L1PB4 LINE L1 -2 6154 5606 1153 138 94 65 chr1 66076452 66076590 -216117074 + L1MB3 LINE L1 6028 6179 -4 560 196 124 111 chr1 66076604 66076625 -216117039 - MIR SINE MIR -2 260 241 2531 160 25 25 chr1 66076625 66077057 -216116607 + MSTB1 LTR MaLR 1 432 0 560 196 124 111 chr1 66077057 66077168 -216116496 - MIR SINE MIR -21 241 121 2413 96 0 0 chr1 66077168 66077481 -216116183 + AluSq SINE Alu 1 313 0 560 196 124 111 chr1 66077481 66077572 -216116092 - MIR SINE MIR -141 121 33 231 347 171 0 chr1 66077818 66078011 -216115653 + MIR SINE MIR 37 262 0 180 313 30 0 chr1 66078291 66078358 -216115306 - L3b LINE CR1 -347 1236 1168 315 65 0 0 chr1 66078720 66078766 -216114898 + (GA)n Simple_repeat Simple_repeat 1 46 0 504 310 79 32 chr1 66079354 66079570 -216114094 - MIR SINE MIR -2 260 35 295 314 92 93 chr1 66079631 66080107 -216113557 - L2 LINE L2 -183 3089 2606 1927 171 41 22 chr1 66080107 66080475 -216113189 - THE1C LTR MaLR 0 375 1 979 280 131 6 chr1 66080494 66080815 -216112849 + MLT1J2 LTR MaLR 38 398 -52 2007 115 28 14 chr1 66081000 66081288 -216112376 - AluSc SINE Alu -16 293 2 246 242 0 76 chr1 66082032 66082098 -216111566 + MIR SINE MIR 63 124 -84 897 302 118 38 chr1 66082123 66082425 -216111239 + MLT1K LTR MaLR 20 297 -291 2044 133 13 3 chr1 66082425 66082727 -216110937 + AluSx SINE Alu 1 305 -7 897 302 118 38 chr1 66082727 66082951 -216110713 + MLT1K LTR MaLR 297 588 0 599 203 47 7 chr1 66083034 66083182 -216110482 + MIR SINE MIR 75 228 -34 25 31 0 0 chr1 66083229 66083261 -216110403 + AT_rich Low_complexity Low_complexity 1 32 0 981 292 110 11 chr1 66083332 66083688 -216109976 - MLT1J2 LTR MaLR -3 447 57 370 225 67 0 chr1 66083877 66083966 -216109698 - MIR3 SINE MIR -107 101 7 2283 75 0 0 chr1 66084605 66084887 -216108777 - AluY SINE Alu -3 308 27 617 302 91 41 chr1 66085501 66085743 -216107921 + MIR SINE MIR 3 256 -6 234 233 167 33 chr1 66085917 66086007 -216107657 - MIR SINE MIR -76 186 85 643 225 53 0 chr1 66086007 66086144 -216107520 + MLT1H1 LTR MaLR 1 187 -362 209 259 28 130 chr1 66086147 66086255 -216107409 + MIR SINE MIR 123 219 -43 214 308 15 0 chr1 66086971 66087036 -216106628 + L2 LINE L2 2994 3059 -213 1016 146 73 17 chr1 66087138 66087316 -216106348 - MER5A DNA MER1_type -1 188 1 280 273 114 23 chr1 66087391 66087523 -216106141 + L2 LINE L2 3167 3310 -3 200 308 38 70 chr1 66087747 66087932 -216105732 + L3 LINE CR1 1144 1322 -255 1071 284 22 22 chr1 66088031 66088348 -216105316 - LTR16C LTR ERVL -37 454 138 374 198 11 37 chr1 66088626 66088748 -216104916 - MIR SINE MIR -64 144 29 1888 125 62 27 chr1 66089610 66090118 -216103546 - MER4A LTR ERV1 0 664 1 1532 245 97 34 chr1 66090371 66090877 -216102787 + MLT1H LTR MaLR 12 549 0 223 341 41 41 chr1 66091037 66091160 -216102504 - L2 LINE L2 -10 3262 3140 505 267 9 0 chr1 66091161 66091266 -216102398 - MER81 DNA DNA -4 110 5 271 265 29 0 chr1 66091414 66091449 -216102215 - MIR SINE MIR -159 103 70 2781 113 13 8 chr1 66091449 66091822 -216101842 - THE1C LTR MaLR 0 375 1 271 265 29 0 chr1 66091822 66091854 -216101810 - MIR SINE MIR -192 70 34 4101 107 12 2 chr1 66091899 66092461 -216101203 - L1PB1 LINE L1 -5 6146 5579 333 371 65 36 chr1 66092536 66092811 -216100853 - L2 LINE L2 -167 3105 2823 217 286 32 0 chr1 66093328 66093391 -216100273 - L2 LINE L2 -7 3306 3242 224 288 36 18 chr1 66093619 66093730 -216099934 - MIR SINE MIR 0 262 150 247 365 10 0 chr1 66093858 66093962 -216099702 - L2 LINE L2 -299 2973 2869 389 303 138 11 chr1 66094503 66094743 -216098921 - L2 LINE L2 -271 3042 2776 410 264 128 34 chr1 66095264 66095466 -216098198 - MIR SINE MIR -44 218 4 644 280 55 64 chr1 66095821 66096057 -216097607 - MIR SINE MIR -17 245 12 335 274 104 0 chr1 66096777 66096883 -216096781 + MIR3 SINE MIR 81 197 -11 2746 94 21 16 chr1 66096921 66097294 -216096370 - THE1C LTR MaLR 0 375 1 350 318 135 21 chr1 66097465 66097657 -216096007 + L2 LINE L2 2539 2752 -562 530 286 69 15 chr1 66098010 66098213 -216095451 - L2 LINE L2 -1220 2094 1881 705 338 45 45 chr1 66098710 66099198 -216094466 + L2 LINE L2 2826 3313 0 295 265 98 0 chr1 66099327 66099429 -216094235 - MER5A DNA MER1_type -1 188 77 285 151 0 0 chr1 66099562 66099615 -216094049 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 6344 56 1 4 chr1 66099624 66100372 -216093292 - L1PA7 LINE L1 0 6154 5409 191 336 152 32 chr1 66100712 66100837 -216092827 - MIR SINE MIR -44 218 79 243 229 33 0 chr1 66101063 66101124 -216092540 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 310 283 20 0 chr1 66101193 66101292 -216092372 - MIR SINE MIR -49 213 113 293 182 0 117 chr1 66101405 66101482 -216092182 + L2 LINE L2 3246 3313 0 215 200 33 0 chr1 66101592 66101652 -216092012 + (TA)n Simple_repeat Simple_repeat 1 62 0 197 269 32 75 chr1 66101660 66101753 -216091911 - L2 LINE L2 -47 3225 3137 387 0 0 0 chr1 66102586 66102629 -216091035 + (TC)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr1 66102628 66102651 -216091013 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 300 303 48 39 chr1 66103071 66103302 -216090362 + L2 LINE L2 2827 3059 -213 257 254 144 42 chr1 66103447 66103565 -216090099 + L2 LINE L2 3138 3267 -5 237 212 294 0 chr1 66103577 66103662 -216090002 + MIR SINE MIR 118 227 -35 405 307 55 37 chr1 66103717 66103836 -216089828 + L3 LINE CR1 1398 1522 -55 444 220 119 60 chr1 66103836 66104004 -216089660 - MER5B DNA MER1_type 0 178 1 405 307 55 37 chr1 66104004 66104047 -216089617 + L3 LINE CR1 1522 1563 -14 27 0 0 0 chr1 66104139 66104166 -216089498 + AT_rich Low_complexity Low_complexity 1 27 0 327 331 49 6 chr1 66104255 66104418 -216089246 + MIR SINE MIR 73 242 -20 270 239 0 0 chr1 66104435 66104506 -216089158 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 189 0 0 0 chr1 66104598 66104619 -216089045 + (T)n Simple_repeat Simple_repeat 1 21 0 231 239 0 0 chr1 66104688 66104755 -216088909 + (CA)n Simple_repeat Simple_repeat 2 68 0 332 266 49 63 chr1 66105143 66105286 -216088378 + MIR SINE MIR 33 173 -89 410 207 11 11 chr1 66106192 66106279 -216087385 - MIR SINE MIR -113 149 63 367 291 88 20 chr1 66106402 66106550 -216087114 - MIR SINE MIR -26 236 79 227 340 97 29 chr1 66106544 66106750 -216086914 + L2 LINE L2 3015 3234 -38 * 337 281 37 52 chr1 66107695 66107830 -216085834 + MIR SINE MIR 2 134 -74 230 263 55 112 chr1 66108199 66108321 -216085343 - MIR SINE MIR -32 230 131 8071 21 7 0 chr1 66108321 66109574 -216084090 + L1PA4 LINE L1 4897 6155 0 230 263 55 112 chr1 66109574 66109695 -216083969 - MIR SINE MIR -131 131 5 248 308 68 34 chr1 66109956 66110073 -216083591 - MIR SINE MIR -88 174 54 692 278 93 19 chr1 66110233 66110449 -216083215 - MIR SINE MIR 0 262 31 577 271 63 29 chr1 66110529 66110736 -216082928 - MIR SINE MIR -10 252 39 188 307 126 24 chr1 66110915 66111042 -216082622 - L2 LINE L2 -218 3054 2915 1322 212 0 8 chr1 66112623 66112873 -216080791 - AluJo SINE Alu -64 248 1 203 371 154 0 chr1 66113001 66113281 -216080383 - L2 LINE L2 0 3272 2950 238 250 0 44 chr1 66113336 66113404 -216080260 - MIR3 SINE MIR -54 154 90 422 236 5 13 chr1 66113499 66113605 -216080059 - MIR SINE MIR -103 105 4 393 231 96 106 chr1 66114395 66114486 -216079178 - MIR SINE MIR -18 244 154 1030 245 11 26 chr1 66114486 66114751 -216078913 + MIR SINE MIR 2 262 0 393 231 96 106 chr1 66114751 66114858 -216078806 - MIR SINE MIR -108 154 48 219 350 58 17 chr1 66114959 66115079 -216078585 - MIR SINE MIR -67 141 17 518 299 37 11 chr1 66115452 66115639 -216078025 - MIR SINE MIR -70 192 1 444 19 0 0 chr1 66116081 66116134 -216077530 + (CA)n Simple_repeat Simple_repeat 2 54 0 268 264 52 81 chr1 66116237 66116411 -216077253 - L2 LINE L2 -174 3098 2930 621 247 143 15 chr1 66116418 66116677 -216076987 + L2 LINE L2 3021 3312 -1 422 222 207 50 chr1 66116841 66117039 -216076625 - MIR SINE MIR -6 256 28 304 255 71 109 chr1 66117172 66117366 -216076298 - MIR SINE MIR -70 192 5 249 255 191 0 chr1 66117842 66117936 -216075728 - L2 LINE L2 -1 3312 3201 188 305 47 117 chr1 66118599 66118727 -216074937 + MIR SINE MIR 30 148 -60 516 311 77 15 chr1 66118758 66118954 -216074710 - MIR SINE MIR -7 255 48 203 32 65 0 chr1 66119708 66119739 -216073925 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 237 286 0 0 chr1 66120518 66120574 -216073090 - MIR SINE MIR -79 129 74 259 204 0 19 chr1 66120788 66120842 -216072822 + L2 LINE L2 3217 3269 -3 213 200 169 0 chr1 66121509 66121574 -216072090 - MIR SINE MIR 0 262 187 303 317 79 90 chr1 66121716 66122095 -216071569 - L2 LINE L2 -36 3236 2862 460 229 151 34 chr1 66122614 66122793 -216070871 + LTR67 LTR ERVL 358 557 0 837 264 110 76 chr1 66123727 66124216 -216069448 + MLT1J LTR MaLR 1 506 -5 955 290 50 32 chr1 66125207 66125763 -216067901 + L1MC/D LINE L1 5258 5823 -1985 21 36 0 0 chr1 66126950 66126978 -216066686 + AT_rich Low_complexity Low_complexity 1 28 0 293 335 174 0 chr1 66127658 66127819 -216065845 + MIR SINE MIR 22 210 -52 342 224 0 0 chr1 66128042 66128109 -216065555 + MIR SINE MIR 176 242 -20 293 327 18 9 chr1 66128215 66128328 -216065336 + MIR SINE MIR 23 136 -126 360 303 41 0 chr1 66128391 66128513 -216065151 + MIR SINE MIR 136 262 0 297 316 71 26 chr1 66128926 66129081 -216064583 + MIR SINE MIR 23 184 -78 199 209 0 23 chr1 66129135 66129178 -216064486 + L2 LINE L2 3060 3101 -171 408 276 48 29 chr1 66129184 66129362 -216064302 + MIR SINE MIR 3 187 -62 299 360 103 42 chr1 66129832 66130143 -216063521 - L2 LINE L2 -10 3262 2933 324 270 0 34 chr1 66130178 66130505 -216063159 + (TG)n Simple_repeat Simple_repeat 1 315 0 248 296 111 43 chr1 66130505 66130758 -216062906 - L2 LINE L2 -423 2891 2622 22 0 0 0 chr1 66130892 66130914 -216062750 + AT_rich Low_complexity Low_complexity 1 22 0 200 297 18 45 chr1 66131348 66131459 -216062205 + CT-rich Low_complexity Low_complexity 1 108 0 212 279 0 29 chr1 66131530 66131598 -216062066 + CT-rich Low_complexity Low_complexity 4 69 0 311 287 0 11 chr1 66131974 66132061 -216061603 - MIR3 SINE MIR -7 201 116 345 186 0 0 chr1 66134046 66134116 -216059548 + (CAG)n Simple_repeat Simple_repeat 3 72 0 310 264 232 2 chr1 66134616 66134774 -216058890 + MIR SINE MIR 37 239 -23 607 302 92 43 chr1 66134849 66135496 -216058168 - L2 LINE L2 0 3313 2628 276 277 40 61 chr1 66135594 66135742 -216057922 + MIR SINE MIR 69 213 -49 297 208 245 36 chr1 66136261 66136404 -216057260 - MIR3 SINE MIR -61 147 13 273 295 132 13 chr1 66136705 66136855 -216056809 + MIR SINE MIR 34 191 -66 683 225 5 96 chr1 66136939 66137157 -216056507 + MER63A DNA MER1_type 11 208 -2 510 308 21 26 chr1 66137208 66137407 -216056257 - MIR SINE MIR -27 181 17 8167 8 0 0 chr1 66138015 66138913 -216054751 - L1PA2 LINE L1 -4 6151 5254 308 284 244 60 chr1 66139040 66139392 -216054272 - MLT1K LTR MaLR -162 426 10 521 312 29 18 chr1 66139453 66139623 -216054041 - MIR SINE MIR -71 191 20 360 343 88 6 chr1 66140218 66140399 -216053265 + L2 LINE L2 3076 3271 -1 194 255 128 0 chr1 66140642 66140689 -216052975 - L2 LINE L2 0 3272 3220 407 324 74 27 chr1 66140908 66141056 -216052608 + MER91A DNA MER1_type 2 156 -40 232 326 120 0 chr1 66141079 66141171 -216052493 + MER91A DNA MER1_type 93 195 -1 233 299 13 4 chr1 66141327 66141410 -216052254 - MIR SINE MIR -57 151 99 365 299 71 0 chr1 66142057 66142184 -216051480 + MIR3 SINE MIR 51 186 -22 341 269 62 140 chr1 66142479 66142736 -216050928 + MIR SINE MIR 20 256 -6 387 319 54 90 chr1 66142945 66143280 -216050384 + L2 LINE L2 2945 3267 -5 834 284 17 9 chr1 66143473 66143705 -216049959 - MIR SINE MIR -1 261 28 279 353 88 63 chr1 66144165 66144607 -216049057 + L2 LINE L2 2818 3270 -2 919 148 0 0 chr1 66145321 66145463 -216048201 - FLAM_C SINE Alu -1 142 1 493 312 61 34 chr1 66145564 66145942 -216047722 - L2 LINE L2 -977 2337 1950 1740 115 0 0 chr1 66145977 66146212 -216047452 + AluSc SINE Alu 67 301 -8 223 250 0 62 chr1 66146227 66146307 -216047357 + MIR SINE MIR 119 193 -69 1326 261 12 25 chr1 66146361 66146683 -216046981 + MLT1I LTR MaLR 92 409 0 192 283 0 0 chr1 66146881 66146927 -216046737 - MIR SINE MIR -1 261 216 422 313 27 20 chr1 66147036 66147183 -216046481 - L3 LINE CR1 -14 1563 1416 367 328 0 8 chr1 66147186 66147308 -216046356 + L2 LINE L2 3191 3311 -2 197 261 92 0 chr1 66147328 66147393 -216046271 + MIR SINE MIR 100 170 -92 374 340 95 25 chr1 66147631 66147872 -216045792 + MIR SINE MIR 2 259 -3 736 264 115 43 chr1 66148034 66148420 -216045244 - MLT1J1 LTR MaLR 0 446 54 382 271 84 32 chr1 66148734 66148889 -216044775 - MIR SINE MIR -52 210 48 252 0 0 0 chr1 66149645 66149673 -216043991 + (CCA)n Simple_repeat Simple_repeat 3 30 0 327 263 84 20 chr1 66150067 66150190 -216043474 + MIR SINE MIR 43 174 -62 237 275 169 21 chr1 66150226 66150368 -216043296 - MIR SINE MIR -29 233 71 374 183 24 0 chr1 66150385 66150467 -216043197 + L1M LINE L1 5297 5380 -800 2206 129 0 0 chr1 66150553 66150863 -216042801 + AluSx SINE Alu 1 310 -2 300 306 88 50 chr1 66150868 66151165 -216042499 - MLT1K LTR MaLR -56 532 225 383 306 40 8 chr1 66151652 66151776 -216041888 + MIR SINE MIR 24 151 -111 1669 216 22 3 chr1 66152228 66152593 -216041071 + L1MB2 LINE L1 4488 4859 -1287 204 67 0 0 chr1 66152613 66152643 -216041021 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 43186 33 28 2 chr1 66152643 66158624 -216035040 - L1PA2 LINE L1 -16 6139 1 4903 167 45 16 chr1 66158624 66159917 -216033747 + L1MB2 LINE L1 4843 6164 -7 21 36 0 0 chr1 66159920 66159948 -216033716 + AT_rich Low_complexity Low_complexity 1 28 0 2573 74 0 0 chr1 66160619 66160930 -216032734 - AluSx SINE Alu -1 311 1 207 291 200 9 chr1 66161166 66161276 -216032388 - L2 LINE L2 -1 3271 3141 28 29 0 0 chr1 66161276 66161311 -216032353 + AT_rich Low_complexity Low_complexity 1 35 0 231 251 23 120 chr1 66161527 66161647 -216032017 + L2 LINE L2 2906 3005 -267 2191 140 55 25 chr1 66161647 66162011 -216031653 + THE1C LTR MaLR 1 375 0 231 251 23 120 chr1 66162011 66162065 -216031599 + L2 LINE L2 3005 3063 -209 374 223 155 0 chr1 66162311 66162414 -216031250 - MLT1J1 LTR MaLR -114 332 214 427 289 172 10 chr1 66163039 66163243 -216030421 - MIR SINE MIR -19 243 7 580 308 92 18 chr1 66163934 66164161 -216029503 + MIR SINE MIR 2 245 -17 644 287 80 30 chr1 66165686 66166024 -216027640 + L2 LINE L2 2440 2794 -520 746 229 2 47 chr1 66166036 66166237 -216027427 + MIR SINE MIR 47 241 -21 267 152 0 0 chr1 66166253 66166299 -216027365 + (CCA)n Simple_repeat Simple_repeat 2 47 0 228 167 24 0 chr1 66166300 66166342 -216027322 + (CAT)n Simple_repeat Simple_repeat 1 43 0 352 343 93 44 chr1 66166343 66166710 -216026954 + L2 LINE L2 2817 3201 -71 786 274 22 4 chr1 66167897 66168123 -216025541 + MIR SINE MIR 30 259 -3 227 225 47 155 chr1 66168184 66168313 -216025351 + L2 LINE L2 3153 3267 -5 201 204 0 23 chr1 66169063 66169107 -216024557 - MIR SINE MIR -110 152 110 727 259 181 69 chr1 66169363 66169413 -216024251 - MLT1H1 LTR MaLR 0 555 512 9753 114 22 18 chr1 66169413 66171695 -216021969 + L1PA10 LINE L1 3890 6167 -1 727 259 181 69 chr1 66171695 66172099 -216021565 - MLT1H1 LTR MaLR -43 512 40 2142 146 7 0 chr1 66172099 66172407 -216021257 + AluSx SINE Alu 3 312 0 727 259 181 69 chr1 66172407 66172442 -216021222 - MLT1H1 LTR MaLR -515 40 10 203 200 40 0 chr1 66172990 66173040 -216020624 + MIR SINE MIR 211 262 0 306 307 22 56 chr1 66173604 66173783 -216019881 - MIR SINE MIR -62 200 28 254 360 37 7 chr1 66174851 66174987 -216018677 - MIR SINE MIR -31 231 92 219 327 18 26 chr1 66175057 66175170 -216018494 + MIR3 SINE MIR 90 201 -7 274 287 128 0 chr1 66175865 66175959 -216017705 + L2 LINE L2 3187 3292 -21 531 263 136 57 chr1 66175969 66176197 -216017467 - MIR SINE MIR 0 262 17 1806 227 66 2 chr1 66176197 66176606 -216017058 + MLT2B1 LTR ERVL 1 435 -85 311 345 36 0 chr1 66177192 66177302 -216016362 - L2 LINE L2 -8 3264 3151 405 318 47 0 chr1 66178827 66178934 -216014730 - L2 LINE L2 -12 3260 3149 366 134 0 0 chr1 66179223 66179290 -216014374 + (TG)n Simple_repeat Simple_repeat 1 67 0 492 315 88 17 chr1 66179391 66179629 -216014035 + L2 LINE L2 3018 3272 0 413 290 194 4 chr1 66179842 66180090 -216013574 + L2 LINE L2 3013 3307 -6 2005 130 0 11 chr1 66180166 66180622 -216013042 + AluSx SINE Alu 1 453 0 617 261 79 42 chr1 66181101 66181349 -216012315 + MIR SINE MIR 3 256 -6 217 339 77 0 chr1 66181702 66181767 -216011897 - L2 LINE L2 -56 3216 3147 * 222 280 70 40 chr1 66181760 66181860 -216011804 + L2 LINE L2 3147 3249 -23 244 316 66 22 chr1 66182000 66182136 -216011528 - L2 LINE L2 -170 3143 3002 244 336 86 8 chr1 66183292 66183420 -216010244 - MER5A DNA MER1_type -14 175 38 364 338 8 15 chr1 66183530 66183663 -216010001 - MIR SINE MIR -111 151 20 363 307 10 0 chr1 66183700 66183801 -216009863 + Charlie7 DNA MER1_type 1 102 -2510 271 258 52 31 chr1 66183885 66183982 -216009682 + Charlie7 DNA MER1_type 2514 2612 0 2180 107 0 4 chr1 66184621 66184901 -216008763 + AluSq SINE Alu 1 279 -34 1014 157 0 0 chr1 66184902 66185080 -216008584 + GA-rich Low_complexity Low_complexity 2 179 0 343 331 44 44 chr1 66185139 66185299 -216008365 + MER91A DNA MER1_type 1 160 -36 223 200 50 17 chr1 66185342 66185402 -216008262 + MER91A DNA MER1_type 129 190 0 1627 105 50 0 chr1 66185738 66185957 -216007707 - MER30 DNA MER1_type 0 230 1 787 229 129 14 chr1 66186084 66186294 -216007370 + MIR SINE MIR 29 262 0 185 304 0 0 chr1 66186361 66186407 -216007257 - MIR3 SINE MIR -52 156 111 216 217 65 0 chr1 66186867 66186913 -216006751 - L2 LINE L2 -9 3263 3215 673 276 38 42 chr1 66186923 66187162 -216006502 + MIR SINE MIR 25 262 0 839 233 167 77 chr1 66187299 66187779 -216005885 + LTR33A LTR ERVL 1 523 0 186 43 0 0 chr1 66188257 66188280 -216005384 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 256 336 224 7 chr1 66188594 66188737 -216004927 - L3 LINE CR1 -233 1344 1171 270 308 111 23 chr1 66189007 66189179 -216004485 + MER5A DNA MER1_type 1 187 -2 774 118 0 59 chr1 66189318 66189453 -216004211 - FAM SINE Alu -1 48 1 712 235 8 0 chr1 66189454 66189586 -216004078 - FAM SINE Alu -52 133 1 268 255 71 20 chr1 66189628 66189726 -216003938 - L1ME4a LINE L1 -49 6072 5970 549 311 50 56 chr1 66190981 66191302 -216002362 + LTR16C LTR ERVL 173 491 0 294 333 81 16 chr1 66191318 66191441 -216002223 - MIR3 SINE MIR -63 145 15 322 397 35 0 chr1 66191612 66191728 -216001936 - L2 LINE L2 -16 3256 3137 264 326 39 23 chr1 66191878 66192007 -216001657 - L2 LINE L2 -1 3312 3182 185 271 94 21 chr1 66193440 66193536 -216000128 + MIR SINE MIR 106 208 -54 301 285 49 49 chr1 66193855 66193978 -215999686 - MIR SINE MIR -67 141 19 21 57 0 0 chr1 66194636 66194671 -215998993 + AT_rich Low_complexity Low_complexity 1 35 0 1635 190 116 37 chr1 66195296 66195728 -215997936 + MER31B LTR ERV1 1 466 0 212 264 0 19 chr1 66195772 66195825 -215997839 - L2 LINE L2 -11 3261 3210 1081 302 24 6 chr1 66195857 66196198 -215997466 + LTR16B LTR ERVL 116 462 -2 568 255 98 7 chr1 66196199 66196352 -215997312 - MIR SINE MIR -59 203 37 204 326 146 0 chr1 66196703 66196792 -215996872 - L2 LINE L2 -15 3298 3197 809 213 11 133 chr1 66197069 66197355 -215996309 + MIR SINE MIR 8 258 -4 588 192 238 6 chr1 66197557 66197729 -215995935 - LTR33 LTR ERVL 0 521 310 480 287 42 18 chr1 66197820 66197987 -215995677 - LTR33 LTR ERVL -338 183 13 1053 216 229 17 chr1 66197995 66198175 -215995489 - MLT1A1 LTR MaLR 0 365 225 342 0 0 0 chr1 66198175 66198213 -215995451 + (TG)n Simple_repeat Simple_repeat 1 38 0 216 0 0 0 chr1 66198212 66198236 -215995428 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1053 216 229 17 chr1 66198213 66198356 -215995308 - MLT1A1 LTR MaLR -140 225 1 350 257 33 25 chr1 66198933 66199053 -215994611 - MIR SINE MIR -70 192 69 517 221 63 16 chr1 66199075 66199202 -215994462 + L2 LINE L2 3178 3310 -3 275 257 30 50 chr1 66199218 66199319 -215994345 - MIR SINE MIR -73 189 91 488 254 42 0 chr1 66199378 66199496 -215994168 + MER5C DNA MER1_type 2 124 -200 181 254 91 0 chr1 66199625 66199680 -215993984 + MER5C DNA MER1_type 248 307 -17 367 211 14 0 chr1 66199859 66199930 -215993734 - L2 LINE L2 -1 3271 3200 382 319 7 15 chr1 66200394 66200529 -215993135 + MIR SINE MIR 20 153 -109 247 213 21 0 chr1 66200686 66200733 -215992931 + MIR SINE MIR 36 83 -179 481 213 115 0 chr1 66200822 66200944 -215992720 - L2 LINE L2 -1 3271 3136 344 277 98 0 chr1 66201160 66201272 -215992392 + L2 LINE L2 3191 3313 0 207 355 0 0 chr1 66201313 66201406 -215992258 - MIR SINE MIR -1 261 169 1965 205 123 37 chr1 66201690 66202257 -215991407 + MLT1E2 LTR MaLR 3 618 -8 425 319 83 0 chr1 66202265 66202422 -215991242 + L2 LINE L2 3089 3258 -14 415 257 35 56 chr1 66202969 66203113 -215990551 - MIR3 SINE MIR -65 143 3 471 301 105 64 chr1 66204424 66204690 -215988974 - L2 LINE L2 0 3272 2996 784 223 30 20 chr1 66204763 66204965 -215988699 - MIR SINE MIR -19 243 40 1042 292 77 36 chr1 66205155 66205652 -215988012 + LTR33A LTR ERVL 7 523 0 4264 153 24 3 chr1 66205714 66206433 -215987231 + L1P LINE L1 21 754 -5392 7548 57 0 0 chr1 66206433 66207678 -215985986 + L1PA6 LINE L1 4925 6170 0 2179 66 0 22 chr1 66208080 66208351 -215985313 + AluY SINE Alu 34 298 -13 492 324 12 0 chr1 66209303 66209476 -215984188 - MER117 DNA MER1_type 0 197 23 231 329 77 12 chr1 66209756 66209927 -215983737 + MIR SINE MIR 48 232 -30 * 553 323 36 32 chr1 66209903 66210154 -215983510 + MIR SINE MIR 5 256 -6 240 271 80 80 chr1 66210991 66211194 -215982470 - MIR SINE MIR -48 214 8 255 170 0 0 chr1 66211688 66211735 -215981929 + GA-rich Low_complexity Low_complexity 3 49 0 592 233 28 78 chr1 66211858 66212038 -215981626 + MIR SINE MIR 2 172 -90 297 329 24 0 chr1 66212034 66212119 -215981545 - L2 LINE L2 -213 3059 2973 * 937 65 0 0 chr1 66212124 66212232 -215981432 + AluSg SINE Alu 39 146 -164 674 269 141 19 chr1 66212294 66212659 -215981005 + LTR16A LTR ERVL 6 446 -4 288 316 148 14 chr1 66212924 66213019 -215980645 + L2 LINE L2 2848 2929 -343 1842 130 0 0 chr1 66213019 66213273 -215980391 - AluSg SINE Alu -18 292 39 288 316 148 14 chr1 66213273 66213386 -215980278 + L2 LINE L2 2929 3084 -188 365 242 69 86 chr1 66213520 66213880 -215979784 - L1ME4a LINE L1 -3 6118 5765 13001 132 31 5 chr1 66213939 66216294 -215977370 + Tigger1 DNA MER2_type 1 2418 0 248 333 63 46 chr1 66216323 66216717 -215976947 + L2 LINE L2 1683 2083 -1231 942 154 131 9 chr1 66216802 66217016 -215976648 - Tigger1 DNA MER2_type 0 2418 2179 1665 111 5 0 chr1 66217310 66217550 -215976114 - AluSq SINE Alu 0 308 68 687 283 47 78 chr1 66218482 66218843 -215974821 + MLT1I LTR MaLR 60 409 0 665 72 0 10 chr1 66218992 66219089 -215974575 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 1027 263 77 111 chr1 66219284 66220490 -215973174 - L2 LINE L2 0 3313 2141 195 301 333 6 chr1 66220854 66221037 -215972627 - MIR SINE MIR 0 262 20 282 257 119 28 chr1 66221200 66221309 -215972355 - MIR SINE MIR -110 152 34 2265 112 3 6 chr1 66221409 66221722 -215971942 + AluSx SINE Alu 1 312 0 429 260 10 0 chr1 66221936 66222036 -215971628 + MIR SINE MIR 53 153 -109 586 224 49 0 chr1 66222258 66222401 -215971263 + L1MB1 LINE L1 6015 6164 -4 244 269 0 32 chr1 66222660 66222753 -215970911 + CT-rich Low_complexity Low_complexity 2 91 0 * 256 286 14 0 chr1 66222685 66222755 -215970909 + C-rich Low_complexity Low_complexity 3 73 0 258 304 29 0 chr1 66223000 66223069 -215970595 - L2 LINE L2 -65 3207 3137 2688 170 21 0 chr1 66223099 66223570 -215970094 + L1MB5 LINE L1 5676 6156 -18 608 242 14 72 chr1 66223680 66223903 -215969761 - L2 LINE L2 -1 3312 3103 30 0 0 0 chr1 66224251 66224281 -215969383 + AT_rich Low_complexity Low_complexity 1 30 0 353 300 15 39 chr1 66225712 66225842 -215967822 - MIR3 SINE MIR -74 134 8 490 261 112 6 chr1 66225919 66226080 -215967584 - MIR SINE MIR -72 190 13 213 268 0 85 chr1 66226336 66226418 -215967246 + L2 LINE L2 3234 3308 -5 246 280 50 30 chr1 66226429 66226529 -215967135 + MIR3 SINE MIR 96 197 -11 298 334 118 35 chr1 66226938 66227516 -215966148 + L2 LINE L2 2258 2883 -431 416 34 0 34 chr1 66227649 66227708 -215965956 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 244 322 83 16 chr1 66228305 66228426 -215965238 + L2 LINE L2 3138 3266 -6 585 235 36 18 chr1 66228468 66228634 -215965030 + MIR SINE MIR 29 197 -65 230 291 47 0 chr1 66228950 66229036 -215964628 + MIR3 SINE MIR 104 193 -15 309 257 35 18 chr1 66229139 66229252 -215964412 + MIR SINE MIR 91 205 -57 190 345 9 9 chr1 66229445 66229555 -215964109 + L2 LINE L2 2649 2758 -556 240 284 95 17 chr1 66231130 66231246 -215962418 + MIR SINE MIR 93 217 -45 408 221 39 39 chr1 66231288 66231392 -215962272 + MIR SINE MIR 19 122 -140 1919 162 7 0 chr1 66231491 66231816 -215961848 - AluSp SINE Alu 0 327 1 597 269 92 71 chr1 66232048 66232331 -215961333 + LTR33A LTR ERVL 7 295 -228 383 290 91 6 chr1 66232371 66232547 -215961117 + LTR33A LTR ERVL 259 449 -74 231 341 110 11 chr1 66232931 66233113 -215960551 + MIR3 SINE MIR 8 207 -1 318 50 0 0 chr1 66233845 66233885 -215959779 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7074 98 2 3 chr1 66233886 66235642 -215958022 - L1PA7 LINE L1 -16 6138 4380 309 333 25 8 chr1 66235915 66236035 -215957629 + MIR SINE MIR 23 144 -118 260 289 13 40 chr1 66237043 66237087 -215956577 - MER91C DNA MER1_type -30 110 67 2157 158 22 8 chr1 66237087 66237447 -215956217 + MLT1A1 LTR MaLR 1 365 0 260 289 13 40 chr1 66237447 66237478 -215956186 - MER91C DNA MER1_type -73 67 37 221 303 92 0 chr1 66238238 66238314 -215955350 - MIR SINE MIR -133 129 47 195 260 0 0 chr1 66238430 66238480 -215955184 - L2 LINE L2 -1 3312 3263 340 261 106 35 chr1 66239182 66239324 -215954340 - MIR SINE MIR -43 219 68 183 303 121 20 chr1 66239444 66239543 -215954121 - L2 LINE L2 -8 3305 3197 808 319 69 44 chr1 66240905 66241149 -215952515 - L2 LINE L2 -219 3053 2817 1844 145 7 23 chr1 66241149 66241459 -215952205 + AluJo SINE Alu 1 305 -7 808 319 69 44 chr1 66241459 66242030 -215951634 - L2 LINE L2 -455 2817 2186 428 227 211 0 chr1 66242053 66242181 -215951483 - MER5A DNA MER1_type -23 166 12 225 234 0 0 chr1 66242267 66242314 -215951350 + CT-rich Low_complexity Low_complexity 2 48 0 2288 106 0 16 chr1 66242934 66243245 -215950419 - AluSc SINE Alu -3 306 1 677 273 36 16 chr1 66243332 66243581 -215950083 + MIR SINE MIR 5 258 -4 549 280 65 26 chr1 66243846 66244078 -215949586 - MLT1L LTR MaLR -9 606 366 1175 211 84 16 chr1 66244394 66244716 -215948948 - MLT1H1 LTR MaLR 0 555 212 2935 6 0 0 chr1 66244774 66245085 -215948579 + AluYa5 SINE Alu 1 311 0 282 345 46 29 chr1 66245342 66245580 -215948084 + L2 LINE L2 2579 2820 -494 406 246 51 8 chr1 66245606 66245724 -215947940 + L2 LINE L2 3189 3311 -2 192 254 0 0 chr1 66245735 66245794 -215947870 + GA-rich Low_complexity Low_complexity 3 61 0 329 309 130 0 chr1 66245846 66245969 -215947695 + L2 LINE L2 3134 3272 0 549 303 6 11 chr1 66246433 66246611 -215947053 + MIR SINE MIR 15 191 -71 431 240 142 12 chr1 66246821 66247032 -215946632 + MIR SINE MIR 16 251 -11 397 248 35 38 chr1 66247289 66247441 -215946223 + MIR SINE MIR 8 151 -62 1055 241 149 36 chr1 66247456 66247958 -215945706 - MLT1F1 LTR MaLR -8 559 1 952 217 47 12 chr1 66248535 66248788 -215944876 + L2 LINE L2 2879 3140 -173 389 250 23 0 chr1 66248811 66248899 -215944765 - MER63A DNA MER1_type -28 182 93 222 196 0 22 chr1 66248965 66249011 -215944653 - MIR SINE MIR -92 116 72 258 258 48 0 chr1 66249032 66249094 -215944570 + MIR SINE MIR 18 82 -180 309 277 0 24 chr1 66249098 66249181 -215944483 - MER63A DNA MER1_type 0 82 2 419 248 85 35 chr1 66249184 66249325 -215944339 + L2 LINE L2 3165 3312 -1 219 294 15 0 chr1 66249410 66249478 -215944186 + L2 LINE L2 3204 3272 0 536 245 49 25 chr1 66249607 66249770 -215943894 + MIR3 SINE MIR 21 187 -21 282 222 0 0 chr1 66250265 66250319 -215943345 - MIR SINE MIR 0 262 209 241 177 167 146 chr1 66250320 66250387 -215943277 + MER58 DNA MER1_type 2 76 -139 1546 179 25 4 chr1 66250387 66250667 -215942997 - AluJb SINE Alu -26 286 1 241 177 167 146 chr1 66250667 66250695 -215942969 + MER58 DNA MER1_type 76 102 -113 * 277 170 45 134 chr1 66250693 66250721 -215942943 + MER58 DNA MER1_type 2319 2348 -72 1849 162 14 0 chr1 66250721 66251017 -215942647 - AluJb SINE Alu -12 300 1 277 170 45 134 chr1 66251017 66251100 -215942564 + MER58 DNA MER1_type 2348 2420 0 789 222 32 11 chr1 66251118 66251303 -215942361 - MIR SINE MIR -56 206 18 228 156 22 22 chr1 66251324 66251369 -215942295 + MIR SINE MIR 72 116 -92 182 322 51 0 chr1 66251914 66251973 -215941691 - L2 LINE L2 -2 3270 3209 * 267 313 52 0 chr1 66251966 66252062 -215941602 + L2 LINE L2 3151 3251 -21 237 33 0 0 chr1 66252065 66252095 -215941569 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 893 182 20 0 chr1 66253142 66253290 -215940374 + FRAM SINE Alu 1 151 -15 321 285 162 6 chr1 66253309 66253488 -215940176 + MIR SINE MIR 56 262 0 539 273 113 46 chr1 66253794 66254120 -215939544 + L3 LINE CR1 1214 1561 -16 228 291 35 12 chr1 66254952 66255038 -215938626 + MIR SINE MIR 111 198 -64 8077 11 0 0 chr1 66255675 66256746 -215936918 + L1PA3 LINE L1 5132 6202 0 380 289 19 57 chr1 66256901 66257060 -215936604 + MIR SINE MIR 32 184 -78 472 269 27 34 chr1 66257623 66257772 -215935892 - MIR SINE MIR -111 151 4 32 0 0 0 chr1 66258172 66258204 -215935460 + AT_rich Low_complexity Low_complexity 1 32 0 2194 105 0 3 chr1 66258206 66258515 -215935149 + AluSq SINE Alu 1 308 0 212 305 49 0 chr1 66259112 66259194 -215934470 - MIR SINE MIR -73 189 104 198 0 0 0 chr1 66259410 66259432 -215934232 + (ATG)n Simple_repeat Simple_repeat 1 22 0 505 202 79 90 chr1 66259465 66259643 -215934021 - MIR SINE MIR -6 256 81 2180 54 0 8 chr1 66259917 66260175 -215933489 + AluY SINE Alu 56 311 0 2472 78 0 13 chr1 66260178 66260487 -215933177 + AluSp SINE Alu 2 306 -7 192 97 0 0 chr1 66261936 66261967 -215931697 + (CTG)n Simple_repeat Simple_repeat 1 31 0 208 292 0 0 chr1 66262721 66262786 -215930878 + (TCG)n Simple_repeat Simple_repeat 2 66 0 2107 129 0 0 chr1 66264180 66264466 -215929198 - AluSx SINE Alu -24 288 3 193 264 198 9 chr1 66265139 66265245 -215928419 - MIR3 SINE MIR -29 179 54 232 282 134 28 chr1 66265528 66265670 -215927994 + MIR SINE MIR 89 245 -17 210 37 0 0 chr1 66266073 66266100 -215927564 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 616 241 53 27 chr1 66266355 66266542 -215927122 - MIR3 SINE MIR 0 208 17 263 277 44 54 chr1 66267430 66267568 -215926096 + MIR SINE MIR 39 173 -63 583 192 8 23 chr1 66268196 66268326 -215925338 + LTR67 LTR ERVL 428 555 -2 402 318 82 13 chr1 66268456 66268741 -215924923 - L2 LINE L2 -199 3073 2771 1059 301 87 61 chr1 66268950 66269111 -215924553 - L2 LINE L2 -574 2740 2585 2354 91 3 3 chr1 66269111 66269408 -215924256 + AluSp SINE Alu 2 298 -15 1059 301 87 61 chr1 66269408 66269934 -215923730 - L2 LINE L2 -729 2585 2035 882 195 41 38 chr1 66270127 66270361 -215923303 + MIR SINE MIR 36 262 0 493 256 0 33 chr1 66270395 66270516 -215923148 + L2 LINE L2 3197 3313 0 1793 144 24 3 chr1 66270859 66271150 -215922514 - AluJb SINE Alu -15 297 1 233 204 20 41 chr1 66271213 66271262 -215922402 - MER91A DNA MER1_type -22 174 127 212 292 153 0 chr1 66271263 66271335 -215922329 - MER91A DNA MER1_type -36 160 78 264 231 333 0 chr1 66271337 66271454 -215922210 - MER91A DNA MER1_type -22 174 19 584 268 60 21 chr1 66271643 66271878 -215921786 + L1ME LINE L1 5530 5773 -348 875 206 125 7 chr1 66271889 66272142 -215921522 - MER46C DNA MER2_type -26 312 28 1066 248 69 13 chr1 66272142 66272460 -215921204 + LTR48B LTR ERV1 1 336 -308 243 78 98 20 chr1 66272492 66272543 -215921121 + LTR29 LTR ERV1 390 444 -178 * 637 174 30 0 chr1 66272534 66272666 -215920998 + MER39B LTR ERV1 518 653 0 1648 184 0 0 chr1 66273139 66273421 -215920243 + 7SLRNA srpRNA srpRNA 4 285 -35 1191 204 157 15 chr1 66273582 66273983 -215919681 - MLT1C LTR MaLR 0 467 10 3839 126 60 3 chr1 66273992 66274571 -215919093 - LTR9 LTR ERV1 0 612 1 186 43 0 0 chr1 66274646 66274669 -215918995 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr1 66274809 66274830 -215918834 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 7568 81 16 2 chr1 66274830 66276648 -215917016 - L1PA7 LINE L1 -16 6138 4305 284 308 43 34 chr1 66277247 66277364 -215916300 - L2 LINE L2 -219 3053 2936 444 306 18 18 chr1 66277372 66277542 -215916122 - MLT1K LTR MaLR 0 588 419 2916 176 12 4 chr1 66277569 66278081 -215915583 - MLT2B1 LTR ERVL 0 520 5 5979 195 24 44 chr1 66278107 66278576 -215915088 - L1MC1 LINE L1 -19 6314 5837 771 168 0 38 chr1 66278576 66278734 -215914930 - FLAM_A SINE Alu 0 133 1 5979 195 24 44 chr1 66278734 66279496 -215914168 - L1MC1 LINE L1 -496 5837 5061 2324 91 0 0 chr1 66279496 66279794 -215913870 + AluY SINE Alu 1 298 -13 5979 195 24 44 chr1 66279794 66281498 -215912166 - L1MC1 LINE L1 -1272 5061 3440 732 194 0 0 chr1 66281744 66281878 -215911786 + AluSg/x SINE Alu 172 305 -5 515 201 144 23 chr1 66281880 66282054 -215911610 + MLT1C LTR MaLR 69 263 -204 1473 244 28 37 chr1 66282293 66282751 -215910913 + LTR16C LTR ERVL 1 454 -37 708 167 191 0 chr1 66283168 66283330 -215910334 + L1MC1 LINE L1 6128 6320 -13 432 315 50 17 chr1 66283538 66283779 -215909885 + L1MC4a LINE L1 5685 5933 -1875 2424 69 0 3 chr1 66283855 66284159 -215909505 - AluY SINE Alu -8 303 1 217 229 21 0 chr1 66284163 66284211 -215909453 + MIR3 SINE MIR 157 205 -3 304 222 40 62 chr1 66284260 66284436 -215909228 + L1M4 LINE L1 4456 4627 -1519 261 276 70 29 chr1 66284917 66285265 -215908399 + L1M1 LINE L1 5093 5454 -726 296 205 39 0 chr1 66285317 66285395 -215908269 + L1ME4a LINE L1 5987 6067 -54 269 233 82 0 chr1 66285594 66285667 -215907997 - L2 LINE L2 -625 2689 2611 373 247 95 76 chr1 66286260 66286348 -215907316 - LTR16A LTR ERVL 0 450 365 1958 146 0 17 chr1 66286348 66286522 -215907142 - AluSx SINE Alu -15 297 129 330 26 0 0 chr1 66286522 66286561 -215907103 + (TG)n Simple_repeat Simple_repeat 2 40 0 1958 146 0 17 chr1 66286561 66286688 -215906976 - AluSx SINE Alu -183 129 1 373 247 95 76 chr1 66286688 66286934 -215906730 - LTR16A LTR ERVL -85 365 96 1278 212 53 36 chr1 66287302 66287661 -215906003 - MLT1A1 LTR MaLR 0 365 1 1352 281 48 11 chr1 66287751 66288185 -215905479 + LTR16B LTR ERVL 5 454 -10 505 339 50 17 chr1 66288207 66288688 -215904976 + HERV16 LTR ERVL 11 507 -4489 576 287 54 45 chr1 66288768 66289099 -215904565 + HERV16 LTR ERVL 617 950 -4046 3030 102 25 11 chr1 66289115 66289585 -215904079 - LTR15 LTR ERV1 -16 477 1 1511 292 54 13 chr1 66289594 66290190 -215903474 + HERV16 LTR ERVL 958 1577 -3419 254 285 61 79 chr1 66290267 66290481 -215903183 + HERV16 LTR ERVL 1729 1938 -3716 1185 240 37 62 chr1 66290509 66290943 -215902721 + HERV16 LTR ERVL 1991 2413 -2583 827 305 24 4 chr1 66290960 66291209 -215902455 + HERV16 LTR ERVL 2670 2923 -2073 296 223 128 88 chr1 66291439 66291587 -215902077 + L2 LINE L2 3159 3312 -1 308 314 100 78 chr1 66291903 66292362 -215901302 - L1M2 LINE L1 -5506 1343 875 712 167 43 22 chr1 66293783 66293921 -215899743 + AluJb SINE Alu 3 143 -169 1984 147 3 10 chr1 66293922 66294222 -215899442 + AluSx SINE Alu 1 298 -14 343 261 59 39 chr1 66294259 66294412 -215899252 - L1ME4a LINE L1 -12 6109 5954 444 234 0 37 chr1 66294445 66294552 -215899112 + L2 LINE L2 3211 3313 0 365 271 158 46 chr1 66294606 66294816 -215898848 + MER102b DNA MER1_type 75 317 -1111 830 193 149 0 chr1 66294816 66294997 -215898667 - MER3 DNA MER1_type 0 209 2 365 271 158 46 chr1 66294997 66295026 -215898638 + MER102b DNA MER1_type 317 341 0 22 0 0 0 chr1 66295049 66295071 -215898593 + AT_rich Low_complexity Low_complexity 1 22 0 259 276 81 11 chr1 66296388 66296475 -215897189 + L2 LINE L2 3133 3225 -47 1025 142 12 6 chr1 66297174 66297336 -215896328 - AluSg/x SINE Alu -3 309 147 311 233 98 45 chr1 66297343 66297476 -215896188 - L1ME3A LINE L1 -143 6027 5888 2283 88 54 0 chr1 66297492 66297788 -215895876 - AluSx SINE Alu 0 312 1 3653 247 61 25 chr1 66297836 66299109 -215894555 - L1MEc LINE L1 -4939 1457 139 24 0 0 0 chr1 66300099 66300123 -215893541 + AT_rich Low_complexity Low_complexity 1 24 0 306 283 83 14 chr1 66300597 66300742 -215892922 - L3b LINE CR1 -243 1340 1186 277 288 315 0 chr1 66301577 66301723 -215891941 + MIR SINE MIR 13 204 -58 207 0 0 0 chr1 66301730 66301753 -215891911 + (GA)n Simple_repeat Simple_repeat 2 24 0 417 312 45 26 chr1 66302425 66302579 -215891085 + L2 LINE L2 2916 3072 -200 432 287 94 30 chr1 66302691 66302893 -215890771 + L2 LINE L2 3099 3313 0 2148 102 20 7 chr1 66303199 66303494 -215890170 - AluSc SINE Alu -10 299 1 1844 141 0 26 chr1 66303858 66304163 -215889501 - AluJb SINE Alu -15 297 1 25 65 0 0 chr1 66305131 66305177 -215888487 + AT_rich Low_complexity Low_complexity 1 46 0 303 329 96 2 chr1 66305401 66305550 -215888114 - MIR SINE MIR -66 142 14 21 57 0 0 chr1 66305679 66305714 -215887950 + AT_rich Low_complexity Low_complexity 1 35 0 1916 165 13 7 chr1 66305989 66306292 -215887372 + AluJb SINE Alu 1 305 -7 2145 122 3 0 chr1 66306808 66307104 -215886560 + AluSg SINE Alu 1 297 -13 528 289 78 15 chr1 66307681 66307885 -215885779 + MIR SINE MIR 41 257 -5 21 36 0 0 chr1 66308456 66308484 -215885180 + AT_rich Low_complexity Low_complexity 1 28 0 850 132 44 66 chr1 66308560 66308634 -215885030 + MER2 DNA MER2_type 28 102 -243 2438 81 0 3 chr1 66308634 66308942 -215884722 + AluY SINE Alu 1 307 -4 850 132 44 66 chr1 66308942 66309049 -215884615 + MER2 DNA MER2_type 102 205 -140 318 250 13 13 chr1 66309078 66309154 -215884510 + MER2 DNA MER2_type 270 345 0 354 202 11 53 chr1 66310091 66310121 -215883543 + MIR SINE MIR 173 203 -59 1170 211 5 5 chr1 66310121 66310339 -215883325 - MER20 DNA MER1_type 0 219 2 354 202 11 53 chr1 66310339 66310402 -215883262 + MIR SINE MIR 203 262 0 387 374 28 6 chr1 66310407 66310589 -215883075 - MIR SINE MIR -71 191 6 1362 226 99 32 chr1 66312766 66313420 -215880244 - L1MDb LINE L1 -1161 5245 4548 13976 126 100 9 chr1 66313445 66314898 -215878766 + Tigger2 DNA MER2_type 1 1320 -1398 2479 70 0 0 chr1 66314898 66315197 -215878467 - AluY SINE Alu -12 299 1 13976 126 100 9 chr1 66315197 66316234 -215877430 + Tigger2 DNA MER2_type 1320 2718 0 3368 249 79 38 chr1 66316245 66316481 -215877183 - L1MDb LINE L1 -1992 4414 4189 1072 101 38 0 chr1 66316481 66316640 -215877024 - L1PA11 LINE L1 -4 6170 6006 3368 249 79 38 chr1 66316640 66318264 -215875400 - L1MDb LINE L1 -2217 4189 2464 692 223 10 64 chr1 66318301 66318551 -215875113 - L1ME LINE L1 -734 5690 5453 1477 156 23 0 chr1 66318551 66318807 -215874857 - L1PA16 LINE L1 0 6166 5905 269 281 62 27 chr1 66318839 66319193 -215874471 - L1MDb LINE L1 -5085 1311 935 633 113 9 17 chr1 66319462 66319577 -215874087 + L1MA3 LINE L1 6192 6305 0 595 256 30 36 chr1 66319772 66319940 -215873724 + MIR SINE MIR 2 168 -94 418 331 105 55 chr1 66319998 66320379 -215873285 + L2 LINE L2 2290 2689 -625 1045 120 0 6 chr1 66320413 66320580 -215873084 + (TTCTC)n Simple_repeat Simple_repeat 4 169 0 220 125 50 0 chr1 66320582 66320622 -215873042 + C-rich Low_complexity Low_complexity 4 45 0 2090 113 3 3 chr1 66320622 66320913 -215872751 - AluSp SINE Alu -22 291 1 21 0 0 0 chr1 66321177 66321198 -215872466 + AT_rich Low_complexity Low_complexity 1 21 0 322 319 102 12 chr1 66321573 66321739 -215871925 + MIR SINE MIR 4 184 -78 525 305 8 0 chr1 66322917 66323048 -215870616 - MIR3 SINE MIR -6 202 71 23 33 0 0 chr1 66323377 66323407 -215870257 + AT_rich Low_complexity Low_complexity 1 30 0 515 217 250 0 chr1 66323793 66323945 -215869719 - MIR SINE MIR 0 262 73 946 228 0 77 chr1 66324870 66325103 -215868561 + MIR SINE MIR 20 234 -28 2116 146 30 16 chr1 66325412 66325782 -215867882 - THE1C LTR MaLR 0 375 1 10406 172 40 29 chr1 66325907 66327184 -215866480 - L1MB1 LINE L1 -6 5986 4725 1482 183 71 0 chr1 66327184 66327452 -215866212 - AluJb SINE Alu -25 287 1 10406 172 40 29 chr1 66327452 66329441 -215864223 - L1MB1 LINE L1 -1267 4725 2688 2666 260 70 62 chr1 66329448 66330489 -215863175 - L1MB1 LINE L1 -4838 1053 4 386 279 36 0 chr1 66331085 66331250 -215862414 + (TA)n Simple_repeat Simple_repeat 1 171 0 22 88 0 0 chr1 66331314 66331371 -215862293 + AT_rich Low_complexity Low_complexity 1 57 0 36 23 0 0 chr1 66331680 66331723 -215861941 + AT_rich Low_complexity Low_complexity 1 43 0 1039 39 0 0 chr1 66332396 66332523 -215861141 + L1PA4 LINE L1 6021 6147 -8 2104 100 11 0 chr1 66333581 66333860 -215859804 + AluSx SINE Alu 16 297 -15 1786 261 66 27 chr1 66334114 66334905 -215858759 - L2 LINE L2 0 3313 2495 2003 177 8 16 chr1 66334962 66335330 -215858334 - MLT1A1 LTR MaLR 0 365 1 263 339 74 51 chr1 66336305 66336562 -215857102 - L2 LINE L2 -1018 2296 2034 411 195 154 41 chr1 66336736 66336859 -215856805 - L2 LINE L2 -1 3312 3176 744 227 38 22 chr1 66336896 66337081 -215856583 - MLT1A2 LTR MaLR -186 188 1 385 225 143 50 chr1 66337145 66337431 -215856233 - L2 LINE L2 -255 3058 2694 22 56 0 0 chr1 66339012 66339048 -215854616 + AT_rich Low_complexity Low_complexity 1 36 0 1218 187 33 0 chr1 66339048 66339289 -215854375 - L1MA7 LINE L1 -26 6265 6017 438 20 0 0 chr1 66339289 66339340 -215854324 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 961 198 0 35 chr1 66339341 66339538 -215854126 - AluJo SINE Alu -38 274 85 1238 168 0 19 chr1 66339540 66339754 -215853910 - L1MA7 LINE L1 -257 6034 5825 24 53 0 0 chr1 66339870 66339908 -215853756 + AT_rich Low_complexity Low_complexity 1 38 0 740 164 53 6 chr1 66340002 66340173 -215853491 - LTR37A LTR ERV1 -2 424 246 3219 168 26 12 chr1 66340769 66341346 -215852318 - MER34C LTR ERV1 0 585 1 262 272 97 18 chr1 66341348 66341565 -215852099 - L1MC5 LINE L1 -231 7730 7497 342 370 35 18 chr1 66341720 66341947 -215851717 - L1MC4a LINE L1 -415 7393 7163 44055 40 0 2 chr1 66343393 66347711 -215845953 - L1PA4 LINE L1 -8 6147 1842 2524 61 6 6 chr1 66347711 66348022 -215845642 + AluY SINE Alu 1 311 0 44055 40 0 2 chr1 66348022 66349855 -215843809 - L1PA4 LINE L1 -4313 1842 7 340 279 110 68 chr1 66349855 66349944 -215843720 + L1M4 LINE L1 2673 2757 -3389 1560 102 4 55 chr1 66349944 66350068 -215843596 + L1PB1 LINE L1 5910 6016 -135 2201 100 7 0 chr1 66350068 66350358 -215843306 + AluSp SINE Alu 1 292 -21 1560 102 4 55 chr1 66350358 66350487 -215843177 + L1PB1 LINE L1 6016 6150 -1 340 279 110 68 chr1 66350487 66350752 -215842912 + L1M4 LINE L1 2757 3042 -3104 22 0 0 0 chr1 66350782 66350804 -215842860 + AT_rich Low_complexity Low_complexity 1 22 0 888 326 167 28 chr1 66351524 66352284 -215841380 + L2 LINE L2 2447 3313 0 258 297 148 10 chr1 66352468 66352569 -215841095 + MIR SINE MIR 47 161 -101 252 0 0 0 chr1 66353561 66353589 -215840075 + (T)n Simple_repeat Simple_repeat 1 28 0 3434 119 60 10 chr1 66353633 66354214 -215839450 - L1MC1 LINE L1 -47 6286 5677 311 215 118 21 chr1 66354225 66354318 -215839346 + MIR3 SINE MIR 102 203 -5 229 310 0 53 chr1 66354372 66354485 -215839179 + L1ME LINE L1 5531 5637 -484 274 253 182 0 chr1 66354622 66354721 -215838943 + L2 LINE L2 3192 3308 -5 497 262 66 0 chr1 66354996 66355118 -215838546 - MER94 DNA DNA -1 133 4 430 339 80 27 chr1 66355389 66355613 -215838051 + MER115 DNA AcHobo 31 266 -427 * 1043 278 36 13 chr1 66355600 66355906 -215837758 + MER115 DNA AcHobo 378 690 -3 446 268 151 38 chr1 66355909 66356258 -215837406 + L2 LINE L2 2764 3146 -167 1186 274 75 29 chr1 66356369 66356833 -215836831 - HAL1 LINE L1 -11 2496 1998 2434 100 43 6 chr1 66356833 66357184 -215836480 - THE1B LTR MaLR 0 364 1 1186 274 75 29 chr1 66357184 66357303 -215836361 - HAL1 LINE L1 -509 1998 1886 25 31 0 0 chr1 66357603 66357635 -215836029 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 66358833 66358854 -215834810 + AT_rich Low_complexity Low_complexity 1 21 0 237 297 118 15 chr1 66358918 66359070 -215834594 - MIR SINE MIR -63 145 17 264 279 16 0 chr1 66359988 66360049 -215833615 + tRNA-Ile-ATT tRNA tRNA 1 62 -15 397 287 87 13 chr1 66360231 66360381 -215833283 + MIR SINE MIR 66 226 -36 357 302 41 52 chr1 66360408 66360433 -215833231 - MIR SINE MIR -12 250 226 1885 126 89 20 chr1 66360433 66360782 -215832882 - THE1C LTR MaLR -2 373 1 357 302 41 52 chr1 66360782 66360928 -215832736 - MIR SINE MIR -36 226 81 326 287 118 19 chr1 66360928 66361168 -215832496 - MLT1K LTR MaLR 0 607 340 280 265 26 59 chr1 66361233 66361369 -215832295 - MLT1L LTR MaLR -371 217 86 331 308 26 41 chr1 66361556 66361572 -215832092 - MIR SINE MIR -51 211 196 213 39 0 0 chr1 66361572 66361598 -215832066 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 331 308 26 41 chr1 66361598 66361776 -215831888 - MIR SINE MIR -66 196 20 241 301 65 32 chr1 66361825 66361948 -215831716 - MIR SINE MIR -134 128 2 22 0 0 0 chr1 66362581 66362603 -215831061 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr1 66363312 66363340 -215830324 + (TG)n Simple_repeat Simple_repeat 2 29 0 2092 117 0 21 chr1 66363356 66363646 -215830018 + AluSx SINE Alu 1 284 -28 409 245 135 22 chr1 66363820 66364000 -215829664 - MIR SINE MIR -6 256 58 395 92 0 92 chr1 66364381 66364468 -215829196 + MADE1 DNA Mariner 1 79 -1 304 276 67 19 chr1 66364487 66364592 -215829072 + MIR SINE MIR 28 137 -125 430 241 86 70 chr1 66365113 66365226 -215828438 - MIR SINE MIR 0 262 142 2516 25 0 0 chr1 66365226 66365557 -215828107 - AluY SINE Alu 0 331 1 430 241 86 70 chr1 66365557 66365629 -215828035 - MIR SINE MIR -120 142 73 244 333 43 0 chr1 66366758 66366851 -215826813 - MIR SINE MIR 0 262 166 2413 101 65 31 chr1 66366862 66367276 -215826388 - MSTA LTR MaLR 0 428 1 274 236 264 7 chr1 66367280 66367428 -215826236 + MLT1L LTR MaLR 27 212 -403 464 250 17 0 chr1 66367656 66367776 -215825888 + MLT1L LTR MaLR 492 613 -2 338 326 0 0 chr1 66367779 66367871 -215825793 - MIR SINE MIR -108 154 63 207 317 85 0 chr1 66367981 66368063 -215825601 + L3 LINE CR1 1412 1500 -77 1870 151 0 0 chr1 66368344 66368701 -215824963 + AluSx SINE Alu 1 357 0 274 243 19 87 chr1 66368737 66368840 -215824824 + MIR SINE MIR 118 213 -49 205 309 0 0 chr1 66368825 66368880 -215824784 - L2 LINE L2 -9 3304 3250 * 34 24 0 0 chr1 66368908 66368949 -215824715 + AT_rich Low_complexity Low_complexity 1 41 0 459 299 77 45 chr1 66369397 66369618 -215824046 - MIR SINE MIR -6 256 29 1062 279 76 8 chr1 66369971 66370304 -215823360 + LTR16B LTR ERVL 118 448 -2 518 286 29 19 chr1 66370325 66370535 -215823129 + L1ME3 LINE L1 5737 5948 -214 2016 115 0 7 chr1 66370595 66370909 -215822755 + AluSc SINE Alu 1 309 0 221 250 118 97 chr1 66371223 66371367 -215822297 + L2 LINE L2 3155 3301 -12 331 316 86 0 chr1 66371626 66371765 -215821899 - MIR SINE MIR -78 184 34 236 244 165 102 chr1 66371862 66372165 -215821499 - L2 LINE L2 0 3272 2951 1222 264 65 27 chr1 66372366 66372813 -215820851 - LTR16B LTR ERVL 0 464 1 415 253 253 0 chr1 66372943 66373105 -215820559 + MIR SINE MIR 60 262 0 243 345 67 8 chr1 66373515 66373634 -215820030 + MER91A DNA MER1_type 42 167 -29 227 267 58 12 chr1 66373835 66373921 -215819743 + MIR3 SINE MIR 110 199 -9 490 344 23 39 chr1 66374076 66374332 -215819332 - MIR SINE MIR -6 256 5 357 250 28 46 chr1 66375777 66375885 -215817779 - MIR SINE MIR -39 223 118 743 258 16 16 chr1 66375892 66376082 -215817582 - MIR SINE MIR 0 262 73 2468 14 0 0 chr1 66376428 66376708 -215816956 + AluYb8 SINE Alu 37 316 -2 266 315 22 11 chr1 66376720 66376812 -215816852 + MIR SINE MIR 46 138 -70 442 212 47 90 chr1 66377469 66377681 -215815983 - Charlie7 DNA MER1_type 0 2612 2410 331 242 61 20 chr1 66377710 66377809 -215815855 - Charlie7 DNA MER1_type -1017 1595 1493 * 467 295 128 27 chr1 66377805 66378103 -215815561 - Charlie7 DNA MER1_type -2255 357 30 1921 255 7 73 chr1 66378719 66378820 -215814844 + MLT1F1 LTR MaLR 1 107 -460 1872 162 3 0 chr1 66378820 66379122 -215814542 - AluSx SINE Alu -9 303 1 1921 255 7 73 chr1 66379122 66379620 -215814044 + MLT1F1 LTR MaLR 107 560 -7 328 295 107 13 chr1 66379778 66379927 -215813737 - MIR SINE MIR 0 262 100 1793 137 0 38 chr1 66379976 66380296 -215813368 - AluSx SINE Alu 0 309 1 260 309 262 7 chr1 66380362 66380511 -215813153 + MIR SINE MIR 26 212 -50 * 437 291 14 43 chr1 66380507 66380527 -215813137 + L2 LINE L2 3136 3155 -117 1043 205 35 0 chr1 66380527 66380727 -215812937 + MER3 DNA MER1_type 1 207 -2 437 291 14 43 chr1 66380727 66380847 -215812817 + L2 LINE L2 3155 3272 0 416 348 5 21 chr1 66381565 66381752 -215811912 + MIR3 SINE MIR 4 187 -21 284 283 310 7 chr1 66381756 66381901 -215811763 + MIR SINE MIR 9 197 -65 555 264 40 40 chr1 66381910 66382058 -215811606 - MER5B DNA MER1_type -4 174 27 547 254 90 0 chr1 66382459 66382593 -215811071 + MIR SINE MIR 2 147 -115 445 333 93 0 chr1 66382682 66382886 -215810778 - MIR SINE MIR -17 245 23 1224 288 44 16 chr1 66383296 66383748 -215809916 + LTR16C LTR ERVL 27 491 0 2517 213 73 63 chr1 66385492 66385960 -215807704 - L1ME1 LINE L1 -76 6484 6022 1935 101 6 61 chr1 66385960 66386288 -215807376 - AluSx SINE Alu 0 312 3 2517 213 73 63 chr1 66386288 66386584 -215807080 - L1ME1 LINE L1 -538 6022 5704 2002 107 6 49 chr1 66386584 66386910 -215806754 + AluSp SINE Alu 1 312 -1 2517 213 73 63 chr1 66386910 66387034 -215806630 - L1ME1 LINE L1 -856 5704 5583 369 221 145 53 chr1 66387034 66387165 -215806499 - L1ME1 LINE L1 -3726 2814 2672 2196 158 97 90 chr1 66387168 66387429 -215806235 - L1MD3 LINE L1 0 7995 7737 1485 194 7 17 chr1 66387429 66387723 -215805941 + AluJb SINE Alu 5 295 -17 2196 158 97 90 chr1 66387723 66388037 -215805627 - L1MD3 LINE L1 -258 7737 7416 2287 44 0 0 chr1 66388038 66388333 -215805331 - AluY SINE Alu 0 307 13 447 210 0 12 chr1 66388352 66388433 -215805231 - MLT1F1 LTR MaLR -442 125 46 288 328 52 69 chr1 66388460 66388765 -215804899 - L1ME1 LINE L1 -6238 302 3 239 246 282 9 chr1 66390313 66390423 -215803241 + MIR SINE MIR 2 141 -121 188 65 0 32 chr1 66390459 66390490 -215803174 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 1186 254 98 44 chr1 66390490 66391013 -215802651 + MLT1L LTR MaLR 57 607 -8 669 306 117 38 chr1 66391064 66391355 -215802309 + L2 LINE L2 2999 3312 -1 287 286 127 0 chr1 66392514 66392640 -215801024 - L2 LINE L2 0 3313 3172 405 228 26 44 chr1 66392737 66392851 -215800813 + MER81 DNA DNA 3 114 0 372 269 154 13 chr1 66393538 66393687 -215799977 - MIR SINE MIR -4 258 89 424 165 198 0 chr1 66393687 66393778 -215799886 - MER81 DNA DNA 0 114 6 594 268 125 6 chr1 66394052 66394220 -215799444 + MLT1I LTR MaLR 10 197 -212 380 252 29 10 chr1 66394222 66394325 -215799339 + LTR16A1 LTR ERVL 1 105 -352 912 211 83 0 chr1 66394335 66394563 -215799101 + MIR SINE MIR 16 262 0 451 241 190 17 chr1 66394750 66394924 -215798740 - MIR SINE MIR 0 262 59 1294 184 8 16 chr1 66395099 66395355 -215798309 - L1MD3 LINE L1 0 7995 7742 193 370 0 0 chr1 66395812 66395893 -215797771 - MIR SINE MIR -10 252 172 814 157 0 0 chr1 66395908 66396042 -215797622 - AluJb SINE Alu -5 307 174 490 212 30 1 chr1 66396073 66396190 -215797474 - MIR SINE MIR -50 158 40 231 242 0 0 chr1 66396638 66396700 -215796964 + (CA)n Simple_repeat Simple_repeat 1 62 0 382 313 97 0 chr1 66397155 66397299 -215796365 - MIR3 SINE MIR -17 191 34 485 141 26 12 chr1 66397473 66397566 -215796098 + MIR SINE MIR 28 124 -84 1031 284 104 39 chr1 66397566 66398006 -215795658 + LTR16C LTR ERVL 4 472 -19 490 258 91 0 chr1 66398028 66398160 -215795504 + MIR SINE MIR 115 258 -4 312 373 51 0 chr1 66398173 66398331 -215795333 - MIR SINE MIR -69 193 28 265 375 123 29 chr1 66398319 66398562 -215795102 + L2 LINE L2 3005 3270 -2 * 912 260 62 16 chr1 66399035 66399277 -215794387 + MIR SINE MIR 8 260 -2 245 250 12 25 chr1 66399359 66399439 -215794225 - Charlie7 DNA MER1_type -4 2608 2530 372 343 39 22 chr1 66399527 66399708 -215793956 - L2 LINE L2 -214 3058 2875 180 0 0 0 chr1 66399715 66399735 -215793929 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 439 322 77 10 chr1 66399872 66400080 -215793584 - LTR16A1 LTR ERVL 0 457 236 353 285 56 34 chr1 66400294 66400473 -215793191 + L2 LINE L2 2874 3056 -257 303 200 100 22 chr1 66400582 66400672 -215792992 - MLT1K LTR MaLR 0 588 492 577 308 65 19 chr1 66401107 66401370 -215792294 - L2 LINE L2 -13 3300 3026 607 284 10 56 chr1 66401485 66401682 -215791982 + MER5A DNA MER1_type 1 188 -1 201 319 21 21 chr1 66401682 66401763 -215791901 - L2 LINE L2 -547 2767 2687 266 309 151 32 chr1 66402625 66402751 -215790913 - MIR SINE MIR -108 154 14 315 291 152 42 chr1 66403595 66403760 -215789904 - LTR33 LTR ERVL -269 252 70 2190 260 88 49 chr1 66404076 66404927 -215788737 + L2 LINE L2 2106 2922 -391 2011 166 27 45 chr1 66404927 66405123 -215788541 + MSTD LTR MaLR 1 199 -197 195 42 0 0 chr1 66405123 66405147 -215788517 + (TC)n Simple_repeat Simple_repeat 1 24 0 2011 166 27 45 chr1 66405147 66405164 -215788500 + MSTD LTR MaLR 199 215 -181 360 88 0 0 chr1 66405164 66405221 -215788443 + (CA)n Simple_repeat Simple_repeat 1 57 0 270 0 0 0 chr1 66405220 66405250 -215788414 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 2011 166 27 45 chr1 66405221 66405438 -215788226 + MSTD LTR MaLR 215 396 0 2190 260 88 49 chr1 66405438 66405585 -215788079 + L2 LINE L2 2922 3134 -179 545 292 169 62 chr1 66406342 66406726 -215786938 - L2 LINE L2 0 3313 2889 257 231 19 0 chr1 66407045 66407097 -215786567 + GA-rich Low_complexity Low_complexity 3 55 0 2154 75 0 4 chr1 66407239 66407519 -215786145 - AluSc SINE Alu -9 300 22 222 319 21 21 chr1 66408521 66408615 -215785049 - MIR SINE MIR -15 247 154 1614 149 29 118 chr1 66408632 66409015 -215784649 + MLT1A1 LTR MaLR 17 365 0 784 289 108 0 chr1 66409265 66409542 -215784122 + L2 LINE L2 1929 2235 -1079 562 184 87 0 chr1 66409578 66409681 -215783983 - FLAM_C SINE Alu -18 125 14 618 214 121 39 chr1 66409737 66409943 -215783721 - L1ME3 LINE L1 -13 6149 5927 2488 194 118 52 chr1 66410087 66410968 -215782696 - L1MC5 LINE L1 -168 7793 6876 1841 280 65 22 chr1 66410970 66411598 -215782066 + L2 LINE L2 2223 2877 -437 873 294 105 33 chr1 66411601 66412116 -215781548 + L2 LINE L2 2751 3313 0 268 216 14 27 chr1 66412125 66412199 -215781465 + L2 LINE L2 3169 3241 -72 495 236 21 24 chr1 66412202 66412363 -215781301 + MLT2B1 LTR ERVL 283 446 -74 256 195 0 0 chr1 66412373 66412414 -215781250 + L2 LINE L2 3267 3307 -6 380 278 94 3 chr1 66412558 66412696 -215780968 + MIR SINE MIR 17 160 -65 247 330 90 67 chr1 66412990 66413347 -215780317 + L2 LINE L2 1916 2280 -1034 334 359 52 46 chr1 66413826 66414174 -215779490 + L2 LINE L2 2311 2660 -654 1196 220 23 26 chr1 66414382 66414646 -215779018 + MLT2B1 LTR ERVL 5 267 -253 696 309 116 30 chr1 66414919 66415324 -215778340 - LTR33 LTR ERVL -49 472 33 501 62 0 0 chr1 66416150 66416215 -215777449 + Alu SINE Alu 237 301 -10 594 320 57 16 chr1 66416509 66416756 -215776908 - MIR SINE MIR 0 262 6 497 279 171 25 chr1 66416905 66417185 -215776479 - L3 LINE CR1 -212 1365 1045 288 276 165 16 chr1 66418066 66418193 -215775471 - MIR SINE MIR -79 183 38 947 249 87 93 chr1 66418729 66419244 -215774420 - LTR33A LTR ERVL -1 522 11 307 329 53 13 chr1 66419453 66419605 -215774059 - MIR SINE MIR -71 191 34 204 240 60 0 chr1 66419938 66419988 -215773676 - MIR SINE MIR -61 147 95 220 368 35 0 chr1 66420925 66421012 -215772652 - MIR SINE MIR -61 147 58 545 200 58 0 chr1 66421150 66421270 -215772394 - LTR33A LTR ERVL -77 446 320 1016 209 51 4 chr1 66421714 66421987 -215771677 - MER3 DNA MER1_type 0 2623 2338 419 158 39 142 chr1 66421984 66422106 -215771558 + MLT1A2 LTR MaLR 109 217 -157 396 196 49 20 chr1 66422106 66422208 -215771456 - MER3 DNA MER1_type 0 2338 2234 656 172 17 0 chr1 66422216 66422332 -215771332 - MER3 DNA MER1_type -87 122 52 201 283 0 0 chr1 66422404 66422457 -215771207 + (TTA)n Simple_repeat Simple_repeat 3 55 0 192 412 0 10 chr1 66422458 66422560 -215771104 - MIR SINE MIR -63 145 45 259 331 39 15 chr1 66422636 66422766 -215770898 + MIR3 SINE MIR 65 197 -11 636 267 60 9 chr1 66422807 66423024 -215770640 - MIR SINE MIR -15 247 20 276 209 200 9 chr1 66423040 66423145 -215770519 + L2 LINE L2 3188 3312 -1 1600 183 40 56 chr1 66423460 66423837 -215769827 - MLT1A2 LTR MaLR 0 374 4 26 30 0 0 chr1 66423887 66423920 -215769744 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 66424024 66424045 -215769619 + AT_rich Low_complexity Low_complexity 1 21 0 274 179 0 88 chr1 66424045 66424134 -215769530 + MIR SINE MIR 66 148 -60 501 297 35 67 chr1 66424254 66424537 -215769127 - L2 LINE L2 0 3272 2999 1987 178 18 3 chr1 66424635 66424977 -215768687 + MER7A DNA MER2_type 1 345 -1 691 285 33 8 chr1 66425302 66425544 -215768120 + MIR SINE MIR 1 248 -14 237 278 37 98 chr1 66425938 66426071 -215767593 - MIR SINE MIR -80 128 19 187 290 0 43 chr1 66426090 66426159 -215767505 - L2 LINE L2 -9 3263 3198 1116 256 69 49 chr1 66426382 66426788 -215766876 - MLT1K LTR MaLR 0 588 175 314 345 35 25 chr1 66427103 66427303 -215766361 + L2 LINE L2 2853 3054 -218 546 285 21 0 chr1 66427433 66427577 -215766087 - MIR SINE MIR -108 154 8 393 296 61 8 chr1 66427694 66427826 -215765838 + L3 LINE CR1 1428 1566 -11 196 360 47 0 chr1 66427824 66427910 -215765754 - L2 LINE L2 -540 2774 2685 * 196 195 54 13 chr1 66428202 66428263 -215765401 + MIR SINE MIR 116 182 -26 606 320 48 4 chr1 66429175 66429406 -215764258 - L3 LINE CR1 -1 1576 1336 396 284 15 0 chr1 66429479 66429613 -215764051 + MIR SINE MIR 80 215 -47 672 287 128 27 chr1 66430282 66430610 -215763054 - L2 LINE L2 -40 3273 2913 717 192 42 6 chr1 66430629 66430796 -215762868 - MER5A DNA MER1_type -14 175 3 862 262 60 39 chr1 66430796 66431132 -215762532 - L2 LINE L2 -403 2911 2569 1019 150 24 6 chr1 66431162 66431329 -215762335 - MER20 DNA MER1_type -4 215 46 369 237 23 53 chr1 66431378 66431509 -215762155 - L2 LINE L2 -1 3312 3186 344 226 117 42 chr1 66431890 66432032 -215761632 - MIR SINE MIR -88 120 8 229 274 221 0 chr1 66432729 66432842 -215760822 + MIR SINE MIR 110 247 -15 863 240 63 61 chr1 66433084 66433185 -215760479 - L2 LINE L2 -50 3263 3164 1630 144 64 0 chr1 66433185 66433435 -215760229 + AluJb SINE Alu 28 293 -19 863 240 63 61 chr1 66433435 66433758 -215759906 - L2 LINE L2 -149 3164 2838 230 296 226 0 chr1 66434657 66434816 -215758848 - L3 LINE CR1 -128 1449 1255 450 238 40 20 chr1 66435087 66435238 -215758426 - MIR SINE MIR -35 227 74 419 305 30 0 chr1 66435975 66436106 -215757558 + L2 LINE L2 3161 3295 -18 195 222 0 0 chr1 66436151 66436196 -215757468 + C-rich Low_complexity Low_complexity 6 50 0 330 247 14 0 chr1 66436198 66436271 -215757393 - L2 LINE L2 -2 3311 3238 738 245 133 79 chr1 66437113 66437675 -215755989 - L2 LINE L2 0 3313 2705 294 308 63 0 chr1 66437718 66437861 -215755803 - MIR SINE MIR -109 153 2 24 32 0 0 chr1 66437929 66437960 -215755704 + AT_rich Low_complexity Low_complexity 1 31 0 203 0 37 0 chr1 66438795 66438822 -215754842 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 350 175 246 0 chr1 66438964 66439078 -215754586 + MIR SINE MIR 47 188 -74 426 287 16 16 chr1 66439208 66439337 -215754327 + MIR SINE MIR 13 141 -121 299 257 60 83 chr1 66439406 66439557 -215754107 + MIR SINE MIR 30 175 -63 191 263 91 30 chr1 66439683 66439782 -215753882 + MIR SINE MIR 128 232 -30 355 219 62 10 chr1 66439899 66439995 -215753669 - MIR SINE MIR -113 149 49 655 225 46 61 chr1 66440011 66440273 -215753391 + MIR SINE MIR 4 261 -1 475 254 28 28 chr1 66440869 66441011 -215752653 - MIR SINE MIR -18 244 103 203 288 0 17 chr1 66441660 66441719 -215751945 + C-rich Low_complexity Low_complexity 6 63 0 * 303 316 0 53 chr1 66441675 66441725 -215751939 + CT-rich Low_complexity Low_complexity 4 55 -125 2609 52 0 10 chr1 66441725 66442035 -215751629 - AluY SINE Alu -2 309 3 303 316 0 53 chr1 66442035 66442171 -215751493 + CT-rich Low_complexity Low_complexity 55 180 0 * 469 232 34 28 chr1 66442117 66442294 -215751370 + (TCTCTG)n Simple_repeat Simple_repeat 2 179 0 204 135 27 0 chr1 66442675 66442712 -215750952 + C-rich Low_complexity Low_complexity 5 42 0 209 289 0 0 chr1 66442833 66442885 -215750779 + MIR SINE MIR 103 154 -108 427 241 7 55 chr1 66443341 66443486 -215750178 - MIR3 SINE MIR -5 203 66 392 255 27 20 chr1 66443886 66443902 -215749762 - L1MA10 LINE L1 0 6334 6319 3123 206 74 65 chr1 66443902 66444799 -215748865 - L1ME1 LINE L1 -5 6161 5257 1876 166 43 20 chr1 66444799 66445191 -215748473 - L1MA7 LINE L1 0 6291 5891 3123 206 74 65 chr1 66445191 66445244 -215748420 - L1ME1 LINE L1 -909 5257 5206 443 266 25 13 chr1 66445281 66445439 -215748225 + MIR SINE MIR 87 246 -16 188 276 69 0 chr1 66445535 66445593 -215748071 - L2 LINE L2 -1019 2295 2234 604 173 0 0 chr1 66445593 66445697 -215747967 + FLAM_C SINE Alu 39 142 -1 236 340 78 63 chr1 66445698 66446368 -215747296 - L2 LINE L2 -1075 2239 1560 986 306 70 48 chr1 66446396 66447006 -215746658 + MLT2E LTR ERVL 1 625 -3 254 282 0 39 chr1 66447293 66447371 -215746293 + MIR SINE MIR 42 116 -92 410 221 229 8 chr1 66447381 66447512 -215746152 + LTR33A LTR ERVL 1 160 -363 422 226 204 0 chr1 66447635 66447772 -215745892 + LTR33A LTR ERVL 343 507 -16 580 244 41 29 chr1 66447968 66448140 -215745524 + MIR SINE MIR 72 245 -17 271 297 85 53 chr1 66449134 66449313 -215744351 - MIR SINE MIR -57 205 20 1453 214 0 0 chr1 66449371 66449651 -215744013 - AluJo SINE Alu -21 291 12 677 296 52 75 chr1 66450106 66450589 -215743075 - MLT1J LTR MaLR -2 509 38 2647 180 106 53 chr1 66450592 66450791 -215742873 + LTR48 LTR ERV1 1 188 -599 2429 89 0 10 chr1 66450791 66451105 -215742559 + AluY SINE Alu 1 311 0 2647 180 106 53 chr1 66451105 66451606 -215742058 + LTR48 LTR ERV1 188 787 0 2256 112 3 3 chr1 66451728 66452040 -215741624 - AluSp SINE Alu -1 312 1 349 306 10 0 chr1 66452145 66452243 -215741421 - MIR SINE MIR -116 146 48 366 289 39 0 chr1 66452258 66452362 -215741302 + MIR SINE MIR 84 191 -71 180 111 0 0 chr1 66452720 66452747 -215740917 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 998 119 5 105 chr1 66453546 66453765 -215739899 - L1MA10 LINE L1 -11 6323 6127 2029 170 46 35 chr1 66453765 66454310 -215739354 + MLT2A2 LTR ERVL 2 551 -3 1581 172 77 6 chr1 66454315 66454641 -215739023 - L1MB1 LINE L1 -56 6133 5785 2189 170 5 25 chr1 66454642 66455048 -215738616 + L1MB1 LINE L1 5369 5766 -568 316 239 42 42 chr1 66455172 66455314 -215738350 - MIR SINE MIR 0 262 121 351 244 30 67 chr1 66455503 66455638 -215738026 + MIR SINE MIR 22 151 -111 277 246 127 25 chr1 66455870 66455988 -215737676 - MIR SINE MIR -62 146 17 312 269 0 0 chr1 66456253 66456320 -215737344 - MER91 DNA MER1_type -89 107 41 829 273 56 13 chr1 66456457 66456688 -215736976 + ERVL LTR ERVL 2132 2372 -3392 239 232 54 0 chr1 66456745 66456801 -215736863 - LTR16C LTR ERVL -2 489 431 1121 328 120 20 chr1 66456911 66457493 -215736171 + L2 LINE L2 2170 2854 -459 3435 103 4 6 chr1 66457493 66457980 -215735684 - L1PA11 LINE L1 0 6174 5689 1121 328 120 20 chr1 66457980 66458194 -215735470 + L2 LINE L2 2854 3045 -268 1873 141 69 33 chr1 66458324 66458686 -215734978 - THE1C LTR MaLR 0 375 1 712 265 46 24 chr1 66458702 66459003 -215734661 - MLT1J LTR MaLR -169 277 1 396 269 79 46 chr1 66459007 66459223 -215734441 + L2 LINE L2 3090 3312 -1 43563 35 22 3 chr1 66459611 66465651 -215728013 + L1PA2 LINE L1 1 6155 0 258 301 52 15 chr1 66465712 66465848 -215727816 - L1ME4a LINE L1 -31 6090 5950 1584 162 70 59 chr1 66465849 66466220 -215727444 - THE1C LTR MaLR 0 375 1 9791 139 5 33 chr1 66466220 66467843 -215725821 - THE1C-int LTR MaLR 0 1580 4 1985 146 35 22 chr1 66467846 66468216 -215725448 - THE1C LTR MaLR 0 375 1 363 44 0 0 chr1 66468401 66468446 -215725218 + (CA)n Simple_repeat Simple_repeat 1 45 0 490 323 72 29 chr1 66468518 66468940 -215724724 - L1MC4a LINE L1 -276 5894 5457 292 292 83 10 chr1 66469083 66469179 -215724485 + MIR SINE MIR 89 191 -71 680 202 17 39 chr1 66469287 66469465 -215724199 - MER104 DNA Tc2 0 180 7 1111 284 10 7 chr1 66469492 66469791 -215723873 - LTR16C LTR ERVL -3 488 189 1192 132 79 0 chr1 66469791 66469981 -215723683 - AluJb SINE Alu -21 291 87 448 289 122 0 chr1 66469986 66470142 -215723522 - LTR16C LTR ERVL -316 175 1 585 331 20 44 chr1 66470311 66470719 -215722945 - HERV16 LTR ERVL -398 5366 4969 * 1378 311 85 41 chr1 66470710 66471442 -215722222 - HERV16 LTR ERVL -830 4824 4061 448 223 14 34 chr1 66471754 66471902 -215721762 - MER104 DNA Tc2 -29 151 7 1251 353 48 16 chr1 66472005 66472795 -215720869 - HERV16 LTR ERVL -716 5048 4234 523 275 36 0 chr1 66472793 66472931 -215720733 - HERV16 LTR ERVL -4853 143 1 * 1003 177 61 0 chr1 66472943 66473107 -215720557 + MER96 DNA MER1_type 1 174 -1 521 385 43 3 chr1 66473160 66473508 -215720156 - LTR16A LTR ERVL -81 369 8 821 221 249 14 chr1 66474286 66474652 -215719012 + LTR50 LTR ERVL 1 452 -343 341 227 13 0 chr1 66474641 66474716 -215718948 - LTR50 LTR ERVL -717 78 3 * 254 354 15 31 chr1 66475461 66475591 -215718073 + MIR3 SINE MIR 67 194 -14 1566 173 68 54 chr1 66475599 66475968 -215717696 + MLT1A2 LTR MaLR 1 374 0 392 309 22 0 chr1 66475972 66476108 -215717556 + MIR3 SINE MIR 64 202 -6 1717 111 21 0 chr1 66476719 66476953 -215716711 + AluSg/x SINE Alu 68 306 -6 242 328 188 0 chr1 66477046 66477174 -215716490 - MIR SINE MIR -98 164 13 268 182 164 0 chr1 66477309 66477364 -215716300 - L2 LINE L2 -40 3232 3169 237 203 14 0 chr1 66477977 66478046 -215715618 + L1ME4a LINE L1 6051 6120 -1 439 279 169 70 chr1 66478462 66478806 -215714858 + L2 LINE L2 2890 3267 -5 360 345 0 28 chr1 66478831 66478976 -215714688 - MIR SINE MIR -102 160 20 345 350 22 33 chr1 66479437 66479620 -215714044 + MIR3 SINE MIR 3 148 -60 342 0 0 0 chr1 66479839 66479877 -215713787 + (TG)n Simple_repeat Simple_repeat 2 39 0 477 207 7 13 chr1 66479880 66480030 -215713634 + GA-rich Low_complexity Low_complexity 2 150 0 186 43 0 0 chr1 66480422 66480445 -215713219 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 229 277 0 15 chr1 66481088 66481153 -215712511 + MER5A DNA MER1_type 43 106 -83 222 299 0 52 chr1 66481275 66481352 -215712312 + MIR SINE MIR 172 244 -18 197 266 114 13 chr1 66481844 66481923 -215711741 - MIR SINE MIR -166 96 10 734 221 46 61 chr1 66481948 66482210 -215711454 - MIR SINE MIR -1 261 4 386 219 62 10 chr1 66482226 66482322 -215711342 + MIR SINE MIR 49 149 -113 224 254 98 49 chr1 66482416 66482538 -215711126 - MIR SINE MIR -7 255 128 333 237 66 90 chr1 66482664 66482815 -215710849 - MIR SINE MIR -63 145 30 468 287 16 16 chr1 66482884 66483013 -215710651 - MIR SINE MIR -121 141 13 392 175 246 0 chr1 66483143 66483257 -215710407 - MIR SINE MIR -74 188 47 203 0 37 0 chr1 66483399 66483426 -215710238 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr1 66484261 66484292 -215709372 + AT_rich Low_complexity Low_complexity 1 31 0 338 308 63 0 chr1 66484360 66484503 -215709161 + MIR SINE MIR 2 153 -109 858 248 133 79 chr1 66484546 66485108 -215708556 + L2 LINE L2 2705 3313 0 352 247 14 0 chr1 66485950 66486023 -215707641 + L2 LINE L2 3238 3311 -2 195 222 0 0 chr1 66486025 66486070 -215707594 + G-rich Low_complexity Low_complexity 6 50 0 456 305 30 0 chr1 66486115 66486246 -215707418 - L2 LINE L2 -18 3295 3161 195 259 91 70 chr1 66486786 66486929 -215706735 - MIR SINE MIR -13 249 104 493 238 40 20 chr1 66486983 66487134 -215706530 + MIR SINE MIR 74 227 -35 278 296 226 0 chr1 66487405 66487564 -215706100 + L3 LINE CR1 1255 1449 -128 985 239 72 60 chr1 66488463 66488786 -215704878 + L2 LINE L2 2838 3169 -144 1616 144 64 0 chr1 66488786 66489036 -215704628 - AluJb SINE Alu -19 293 28 985 239 72 60 chr1 66489036 66489143 -215704521 + L2 LINE L2 3169 3273 -40 184 266 141 0 chr1 66489189 66489253 -215704411 - MIR SINE MIR -65 143 71 264 274 221 0 chr1 66489379 66489492 -215704172 - MIR SINE MIR -15 247 110 355 206 127 43 chr1 66490187 66490328 -215703336 + MIR SINE MIR 8 163 -88 407 237 23 53 chr1 66490709 66490840 -215702824 + L2 LINE L2 3186 3312 -1 1011 150 24 6 chr1 66490889 66491056 -215702608 + MER20 DNA MER1_type 46 215 -4 1183 265 69 49 chr1 66491086 66491422 -215702242 + L2 LINE L2 2569 2897 -416 797 183 74 6 chr1 66491422 66491597 -215702067 + MER5A DNA MER1_type 3 189 0 1183 265 69 49 chr1 66491597 66491936 -215701728 + L2 LINE L2 2897 3273 -40 435 284 15 0 chr1 66492605 66492739 -215700925 - MIR SINE MIR -47 215 80 648 325 48 4 chr1 66492812 66493043 -215700621 + L3 LINE CR1 1336 1576 -1 184 306 163 0 chr1 66493045 66493143 -215700521 + MIR3 SINE MIR 78 191 -17 211 197 131 33 chr1 66493955 66494016 -215699648 - MIR3 SINE MIR -26 182 116 221 354 42 21 chr1 66494298 66494394 -215699270 + L2 LINE L2 2677 2774 -540 * 434 296 61 8 chr1 66494392 66494524 -215699140 - L3 LINE CR1 -11 1566 1428 590 285 21 0 chr1 66494641 66494785 -215698879 + MIR SINE MIR 8 154 -108 350 335 48 48 chr1 66494887 66495114 -215698550 - L2 LINE L2 -193 3079 2853 1112 256 69 49 chr1 66495429 66495835 -215697829 + MLT1K LTR MaLR 175 588 0 208 290 0 43 chr1 66496058 66496127 -215697537 + L2 LINE L2 3198 3263 -9 268 278 37 98 chr1 66496146 66496279 -215697385 + MIR SINE MIR 19 151 -80 764 285 33 8 chr1 66496673 66496915 -215696749 - MIR SINE MIR -14 248 1 2109 175 18 3 chr1 66497239 66497581 -215696083 - MER7A DNA MER2_type -1 345 1 587 293 35 70 chr1 66497675 66497962 -215695702 + L2 LINE L2 2996 3272 0 281 192 0 88 chr1 66498082 66498171 -215695493 - MIR SINE MIR -60 148 66 21 0 0 0 chr1 66498171 66498192 -215695472 + AT_rich Low_complexity Low_complexity 1 21 0 893 181 39 82 chr1 66498379 66498606 -215695058 + MLT1A2 LTR MaLR 1 217 -157 407 196 49 20 chr1 66498606 66498708 -215694956 - MER3 DNA MER1_type 0 2338 2234 655 172 17 0 chr1 66498716 66498832 -215694832 - MER3 DNA MER1_type -87 122 52 201 283 0 0 chr1 66498904 66498957 -215694707 + (TTA)n Simple_repeat Simple_repeat 3 55 0 220 400 0 18 chr1 66498958 66499068 -215694596 - MIR SINE MIR -63 145 38 295 331 39 15 chr1 66499136 66499266 -215694398 + MIR3 SINE MIR 65 197 -11 739 267 60 9 chr1 66499307 66499524 -215694140 - MIR SINE MIR -15 247 20 310 209 200 9 chr1 66499540 66499645 -215694019 + L2 LINE L2 3188 3312 -1 983 193 42 77 chr1 66499960 66500219 -215693445 - MLT1A2 LTR MaLR 0 374 125 1217 273 29 3 chr1 66500373 66500684 -215692980 - LTR16B LTR ERVL -141 323 5 1472 209 53 34 chr1 66500774 66501132 -215692532 + MLT1A1 LTR MaLR 1 365 0 1301 141 10 5 chr1 66501746 66501873 -215691791 + AluSx SINE Alu 1 131 -181 405 39 0 0 chr1 66501873 66501924 -215691740 + (CA)n Simple_repeat Simple_repeat 2 52 0 1301 141 10 5 chr1 66501924 66501995 -215691669 + AluSx SINE Alu 131 200 -112 1985 135 7 3 chr1 66502002 66502129 -215691535 + AluSx SINE Alu 1 126 -186 456 19 0 0 chr1 66502129 66502182 -215691482 + (CA)n Simple_repeat Simple_repeat 2 54 0 1985 135 7 3 chr1 66502182 66502350 -215691314 + AluSx SINE Alu 126 297 -15 335 241 48 0 chr1 66502355 66502438 -215691226 + LTR16A1 LTR ERVL 371 457 0 273 233 82 0 chr1 66503031 66503104 -215690560 + L2 LINE L2 2611 2689 -625 341 192 39 0 chr1 66503304 66503382 -215690282 - L1ME4a LINE L1 -54 6067 5987 385 276 74 30 chr1 66503436 66503782 -215689882 - L1P1 LINE L1 -703 5452 5093 386 227 34 57 chr1 66504263 66504439 -215689225 - L1M4 LINE L1 -1519 4627 4456 214 229 21 0 chr1 66504488 66504536 -215689128 - MIR3 SINE MIR -3 205 157 2383 64 0 7 chr1 66504540 66504835 -215688829 + AluY SINE Alu 1 293 -18 293 307 50 21 chr1 66504909 66505150 -215688514 - L1MC4a LINE L1 -1876 5932 5685 787 167 191 0 chr1 66505358 66505520 -215688144 - L1MC1 LINE L1 -13 6320 6128 1632 242 28 37 chr1 66505937 66506395 -215687269 - LTR16C LTR ERVL -37 454 1 603 195 144 23 chr1 66506634 66506808 -215686856 - MLT1C LTR MaLR -204 263 69 758 188 8 0 chr1 66506810 66506943 -215686721 - AluSg/x SINE Alu -5 307 174 6834 192 24 44 chr1 66507189 66508892 -215684772 + L1MC1 LINE L1 3440 5175 -1158 2303 94 0 0 chr1 66508892 66509190 -215684474 - AluY SINE Alu -13 298 1 6834 192 24 44 chr1 66509190 66509952 -215683712 + L1MC1 LINE L1 5175 5837 -496 820 168 0 38 chr1 66509952 66510110 -215683554 + FLAM_A SINE Alu 1 133 0 6834 192 24 44 chr1 66510110 66510583 -215683081 + L1MC1 LINE L1 5837 6318 -15 3154 176 12 4 chr1 66510605 66511117 -215682547 + MLT2B1 LTR ERVL 5 520 0 521 300 18 18 chr1 66511144 66511314 -215682350 + MLT1K LTR MaLR 419 588 0 280 308 43 34 chr1 66511322 66511439 -215682225 + L2 LINE L2 2936 3053 -219 8129 81 6 1 chr1 66512038 66513877 -215679787 + L1PA7 LINE L1 4305 6159 0 186 43 0 0 chr1 66514017 66514040 -215679624 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 4100 128 60 3 chr1 66514115 66514694 -215678970 + LTR9 LTR ERV1 1 612 0 1353 194 162 20 chr1 66514703 66515104 -215678560 + MLT1C LTR MaLR 10 467 0 239 234 0 91 chr1 66515187 66515264 -215678400 - FAM SINE Alu -1 178 109 1666 177 0 0 chr1 66515265 66515547 -215678117 - 7SLRNA srpRNA srpRNA -35 285 4 703 174 30 0 chr1 66516020 66516152 -215677512 - MER39B LTR ERV1 0 653 518 279 143 86 14 chr1 66516124 66516194 -215677470 - LTR29 LTR ERV1 -158 464 390 * 1192 248 69 13 chr1 66516226 66516544 -215677120 - LTR48B LTR ERV1 -308 336 1 1004 202 125 7 chr1 66516544 66516797 -215676867 + MER46C DNA MER2_type 28 312 -26 688 272 59 21 chr1 66516804 66517043 -215676621 - L1ME LINE L1 -344 5777 5530 271 231 333 0 chr1 66517232 66517349 -215676315 + MER91A DNA MER1_type 19 174 -22 209 292 153 0 chr1 66517351 66517423 -215676241 + MER91A DNA MER1_type 78 160 -36 234 204 20 41 chr1 66517424 66517473 -215676191 + MER91A DNA MER1_type 127 174 -22 1785 144 24 3 chr1 66517536 66517827 -215675837 + AluJb SINE Alu 1 297 -15 491 256 0 33 chr1 66518165 66518286 -215675378 - L2 LINE L2 0 3313 3197 881 195 41 38 chr1 66518320 66518554 -215675110 - MIR SINE MIR 0 262 36 1096 301 79 59 chr1 66518777 66519273 -215674391 + L2 LINE L2 2070 2584 -730 2356 92 3 3 chr1 66519273 66519568 -215674096 - AluSp SINE Alu -17 296 2 1096 301 79 59 chr1 66519568 66519729 -215673935 + L2 LINE L2 2584 2740 -574 315 306 65 26 chr1 66519938 66520223 -215673441 + L2 LINE L2 2771 3073 -199 638 192 8 23 chr1 66520353 66520483 -215673181 - LTR67 LTR ERVL -2 555 428 223 283 66 27 chr1 66521136 66521249 -215672415 - MIR SINE MIR -63 145 39 550 228 56 28 chr1 66522143 66522323 -215671341 + MIR3 SINE MIR 24 208 0 210 37 0 0 chr1 66522574 66522601 -215671063 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 232 282 134 28 chr1 66523004 66523146 -215670518 - MIR SINE MIR -17 245 89 193 264 198 9 chr1 66523432 66523538 -215670126 + MIR3 SINE MIR 54 179 -29 2107 129 0 0 chr1 66524211 66524497 -215669167 + AluSx SINE Alu 3 288 -24 208 292 0 0 chr1 66525892 66525957 -215667707 + (CGA)n Simple_repeat Simple_repeat 2 66 0 192 97 0 0 chr1 66526711 66526742 -215666922 + (CAG)n Simple_repeat Simple_repeat 1 31 0 2449 81 0 13 chr1 66528191 66528500 -215665164 - AluSp SINE Alu -7 306 2 2200 50 0 8 chr1 66528508 66528766 -215664898 - AluY SINE Alu 0 311 56 520 197 79 90 chr1 66529040 66529218 -215664446 + MIR SINE MIR 81 256 -6 276 149 0 0 chr1 66529229 66529276 -215664388 + (CAT)n Simple_repeat Simple_repeat 3 49 0 212 305 49 0 chr1 66529491 66529573 -215664091 + MIR SINE MIR 104 189 -73 2193 105 0 3 chr1 66530170 66530479 -215663185 - AluSq SINE Alu 0 308 1 32 0 0 0 chr1 66530481 66530513 -215663151 + AT_rich Low_complexity Low_complexity 1 32 0 472 269 27 34 chr1 66530913 66531062 -215662602 + MIR SINE MIR 4 151 -111 380 289 19 57 chr1 66531625 66531784 -215661880 - MIR SINE MIR -78 184 32 194 140 0 20 chr1 66531939 66531989 -215661675 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 8048 13 0 0 chr1 66531989 66533010 -215660654 - L1PA3 LINE L1 -3 6152 5132 228 291 35 12 chr1 66533644 66533730 -215659934 - MIR SINE MIR -64 198 111 539 273 113 46 chr1 66534561 66534887 -215658777 - L3 LINE CR1 -16 1561 1214 321 285 162 6 chr1 66535193 66535372 -215658292 - MIR SINE MIR 0 262 56 904 176 20 0 chr1 66535391 66535539 -215658125 - FRAM SINE Alu -15 151 1 201 39 0 0 chr1 66536586 66536612 -215657052 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 267 313 52 0 chr1 66536615 66536711 -215656953 - L2 LINE L2 -21 3251 3151 182 322 51 0 chr1 66536704 66536763 -215656901 + L2 LINE L2 3209 3270 -2 * 228 156 22 22 chr1 66537308 66537353 -215656311 - MIR SINE MIR -92 116 72 802 216 32 11 chr1 66537374 66537559 -215656105 + MIR SINE MIR 18 206 -56 277 170 45 134 chr1 66537578 66537661 -215656003 - MER58 DNA MER1_type 0 2420 2348 1858 162 14 0 chr1 66537661 66537958 -215655706 + AluJb SINE Alu 1 301 -11 277 170 45 134 chr1 66537958 66537986 -215655678 - MER58 DNA MER1_type -72 2348 2319 241 177 167 146 chr1 66537984 66538012 -215655652 - MER58 DNA MER1_type -113 102 76 * 1546 179 25 4 chr1 66538012 66538292 -215655372 + AluJb SINE Alu 1 286 -26 241 177 167 146 chr1 66538292 66538359 -215655305 - MER58 DNA MER1_type -139 76 2 282 222 0 0 chr1 66538360 66538414 -215655250 + MIR SINE MIR 209 262 0 536 245 49 25 chr1 66538909 66539072 -215654592 - MIR3 SINE MIR -21 187 21 219 294 15 0 chr1 66539201 66539269 -215654395 - L2 LINE L2 0 3272 3204 419 248 85 35 chr1 66539354 66539495 -215654169 - L2 LINE L2 -1 3312 3165 309 277 0 24 chr1 66539498 66539581 -215654083 + MER63A DNA MER1_type 2 82 0 258 258 48 0 chr1 66539585 66539647 -215654017 - MIR SINE MIR -180 82 18 222 196 0 22 chr1 66539668 66539714 -215653950 + MIR SINE MIR 72 116 -92 389 250 23 0 chr1 66539780 66539868 -215653796 + MER63A DNA MER1_type 93 182 -28 952 217 47 12 chr1 66539891 66540144 -215653520 - L2 LINE L2 -173 3140 2879 1074 239 149 36 chr1 66540721 66541223 -215652441 + MLT1F1 LTR MaLR 1 559 -8 397 248 35 38 chr1 66541238 66541390 -215652274 - MIR SINE MIR -62 146 8 431 240 142 12 chr1 66541647 66541858 -215651806 - MIR SINE MIR -11 251 16 549 303 6 11 chr1 66542068 66542246 -215651418 - MIR SINE MIR -71 191 15 329 309 130 0 chr1 66542710 66542833 -215650831 - L2 LINE L2 0 3272 3134 192 254 0 0 chr1 66542885 66542944 -215650720 + CT-rich Low_complexity Low_complexity 3 61 0 406 246 51 8 chr1 66542955 66543073 -215650591 - L2 LINE L2 -2 3311 3189 282 345 46 29 chr1 66543099 66543337 -215650327 - L2 LINE L2 -494 2820 2579 2966 0 0 0 chr1 66543577 66543887 -215649777 - AluYa5 SINE Alu -1 310 1 1175 211 84 16 chr1 66543945 66544267 -215649397 + MLT1H1 LTR MaLR 212 555 0 549 280 65 26 chr1 66544583 66544815 -215648849 + MLT1L LTR MaLR 366 606 -9 694 269 36 16 chr1 66545080 66545329 -215648335 - MIR SINE MIR -4 258 5 2320 103 0 16 chr1 66545416 66545727 -215647937 + AluSc SINE Alu 1 306 -3 1840 139 32 14 chr1 66545907 66546188 -215647476 - AluSx SINE Alu -24 288 3 450 304 39 84 chr1 66547254 66547586 -215646078 - L2 LINE L2 0 3272 2956 2199 112 3 38 chr1 66548612 66548926 -215644738 - AluSq SINE Alu -10 303 1 605 271 23 41 chr1 66549078 66549296 -215644368 + LTR33 LTR ERVL 308 521 0 663 227 0 70 chr1 66549302 66549487 -215644177 - L1MC5 LINE L1 -516 7445 7274 27 0 0 0 chr1 66549583 66549610 -215644054 + AT_rich Low_complexity Low_complexity 1 27 0 16437 155 34 20 chr1 66549610 66552811 -215640853 - L1PB2 LINE L1 -2 6865 3710 1921 75 8 4 chr1 66552811 66553089 -215640575 - AluY SINE Alu 0 320 42 16437 155 34 20 chr1 66553089 66555391 -215638273 - L1PB2 LINE L1 -3157 3710 1237 2845 166 19 77 chr1 66555391 66556040 -215637624 - LTR9 LTR ERV1 0 612 2 16437 155 34 20 chr1 66556040 66557295 -215636369 - L1PB2 LINE L1 -5630 1237 1 555 208 12 29 chr1 66557384 66557552 -215636112 - L1MC5 LINE L1 -733 7228 7094 1552 184 6 49 chr1 66557799 66558125 -215635539 - AluJo SINE Alu 0 312 1 216 262 0 0 chr1 66558609 66558651 -215635013 + (CA)n Simple_repeat Simple_repeat 2 43 0 210 37 0 0 chr1 66558651 66558678 -215634986 + (GA)n Simple_repeat Simple_repeat 2 28 0 446 287 8 22 chr1 66558775 66558970 -215634694 - MLT1J LTR MaLR -228 283 56 186 273 212 10 chr1 66559060 66559159 -215634505 + L2 LINE L2 2943 3061 -211 498 202 0 0 chr1 66559315 66559409 -215634255 + L1MB4 LINE L1 6007 6100 -80 1125 229 8 42 chr1 66559409 66559649 -215634015 - MER8 DNA MER2_type 0 239 8 414 171 0 0 chr1 66559654 66559730 -215633934 + L1MB4 LINE L1 6097 6172 -8 2309 125 27 14 chr1 66559865 66560233 -215633431 - THE1C LTR MaLR -2 373 1 316 281 114 18 chr1 66560351 66560518 -215633146 - LTR16A LTR ERVL -108 342 160 636 244 25 45 chr1 66560624 66560825 -215632839 + MIR SINE MIR 66 262 0 734 318 97 10 chr1 66560966 66561368 -215632296 - L2 LINE L2 -707 2607 2171 3573 157 34 0 chr1 66561499 66562080 -215631584 + LTR26 LTR ERV1 1 601 -2 1157 150 6 0 chr1 66562305 66562478 -215631186 + HUERS-P1 LTR ERV1 6924 7097 -1023 1321 193 4 4 chr1 66562481 66562714 -215630950 + MER49 LTR ERV1 1 233 -690 34 42 0 0 chr1 66562804 66562852 -215630812 + AT_rich Low_complexity Low_complexity 1 48 0 1005 197 35 30 chr1 66562908 66563106 -215630558 - LOR1-int LTR ERV1 -621 6137 5939 304 167 0 0 chr1 66563095 66563143 -215630521 - LOR1-int LTR ERV1 -4140 3980 3933 * 539 361 34 0 chr1 66563166 66563435 -215630229 + HUERS-P1 LTR ERV1 5985 6262 -1 3405 153 28 28 chr1 66563437 66564039 -215629625 + LTR26 LTR ERV1 2 603 0 295 239 106 39 chr1 66564388 66564568 -215629096 + L2 LINE L2 2712 2903 -411 2228 115 6 6 chr1 66564574 66564905 -215628759 - AluSx SINE Alu 0 331 1 1957 142 6 16 chr1 66564919 66565235 -215628429 - L1MC1 LINE L1 -10 6323 6011 707 295 34 44 chr1 66565238 66565624 -215628040 + L2 LINE L2 2889 3270 -43 210 53 0 79 chr1 66565624 66565662 -215628002 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 464 309 76 49 chr1 66565741 66566029 -215627635 + L2 LINE L2 2976 3271 -1 785 253 136 0 chr1 66567637 66567945 -215625719 + L2 LINE L2 2309 2658 -656 762 271 54 26 chr1 66567992 66568421 -215625243 - MLT1J LTR MaLR -20 480 24 190 219 0 0 chr1 66568858 66568899 -215624765 - MIR SINE MIR -57 151 111 331 240 194 0 chr1 66569572 66569701 -215623963 - MER5A DNA MER1_type -33 156 3 180 260 82 55 chr1 66570012 66570085 -215623579 + MIR SINE MIR 120 194 -68 1767 112 120 11 chr1 66570390 66570657 -215623007 - AluSg SINE Alu -14 296 1 241 237 229 15 chr1 66570686 66570817 -215622847 - MIR SINE MIR -65 197 39 469 193 109 34 chr1 66571011 66571130 -215622534 + MIR SINE MIR 117 244 -18 437 308 93 0 chr1 66571219 66571391 -215622273 + MIR SINE MIR 60 247 -15 468 292 75 100 chr1 66571743 66571983 -215621681 - L2 LINE L2 -32 3240 3007 241 281 62 0 chr1 66572031 66572095 -215621569 + L2 LINE L2 3186 3253 -19 5953 107 98 111 chr1 66572589 66572602 -215621062 + pTR5 LTR ERV1 729 741 -1697 2042 98 4 0 chr1 66572602 66572866 -215620798 - AluSx SINE Alu -17 295 31 5953 107 98 111 chr1 66572866 66574449 -215619215 + pTR5 LTR ERV1 741 2438 0 251 91 0 0 chr1 66574452 66574485 -215619179 - AluSx SINE Alu -268 34 2 889 234 67 123 chr1 66574859 66575411 -215618253 + L2 LINE L2 1961 2481 -833 941 296 77 49 chr1 66575436 66575906 -215617758 + L2 LINE L2 2831 3313 0 2132 197 22 17 chr1 66575995 66576407 -215617257 + MLT2D LTR ERVL 1 414 0 303 333 105 19 chr1 66577346 66577556 -215616108 - MIR SINE MIR 0 262 35 392 242 58 21 chr1 66577625 66577758 -215615906 - MER5A DNA MER1_type -30 159 13 989 320 137 39 chr1 66577847 66578823 -215614841 - L2 LINE L2 -78 3194 2127 381 258 134 0 chr1 66579061 66579218 -215614446 - MIR SINE MIR -41 221 45 789 209 16 106 chr1 66579293 66579547 -215614117 + MSTD LTR MaLR 1 231 -165 21 0 0 0 chr1 66580226 66580247 -215613417 + AT_rich Low_complexity Low_complexity 1 21 0 793 231 86 5 chr1 66581196 66581382 -215612282 + MSTD LTR MaLR 194 394 -2 6504 225 86 37 chr1 66581392 66583040 -215610624 + MSTD-int LTR MaLR 8 1735 0 1828 178 95 24 chr1 66583040 66583410 -215610254 + MSTD LTR MaLR 1 396 0 245 242 167 48 chr1 66583498 66583684 -215609980 - L1 LINE L1 -1057 5089 4882 320 206 0 15 chr1 66583706 66583774 -215609890 - L2 LINE L2 -1 3312 3246 264 301 32 32 chr1 66583911 66584004 -215609660 + L2 LINE L2 3001 3093 -179 420 20 0 0 chr1 66584300 66584349 -215609315 + (CA)n Simple_repeat Simple_repeat 2 50 0 2562 102 11 8 chr1 66584350 66584704 -215608960 + THE1A LTR MaLR 1 355 0 12740 86 9 1 chr1 66584704 66586270 -215607394 + THE1A-int LTR MaLR 1 1579 -1 2568 104 8 11 chr1 66586271 66586627 -215607037 + THE1A LTR MaLR 1 355 0 592 220 209 0 chr1 66586644 66586821 -215606843 + HAL1 LINE L1 1698 1911 -596 427 253 222 12 chr1 66586935 66587255 -215606409 + HAL1 LINE L1 2116 2502 -5 4677 93 55 0 chr1 66587257 66587911 -215605753 - L1PA13 LINE L1 -4 6159 5470 406 262 36 95 chr1 66588164 66588332 -215605332 - MIR SINE MIR -73 189 32 856 257 51 17 chr1 66589037 66589274 -215604390 + LTR16A LTR ERVL 201 445 -5 2080 100 9 56 chr1 66589303 66589622 -215604042 - AluSg SINE Alu -6 304 1 655 261 41 37 chr1 66589646 66589864 -215603800 + L2 LINE L2 3095 3313 0 700 286 43 8 chr1 66589894 66590128 -215603536 + MIR SINE MIR 13 254 -8 696 94 0 0 chr1 66590582 66590688 -215602976 + (TCCA)n Simple_repeat Simple_repeat 1 106 0 280 326 172 50 chr1 66590688 66590967 -215602697 - L2 LINE L2 -17 3255 2943 2162 193 34 2 chr1 66590980 66591389 -215602275 - MER82 DNA MER2_type -230 423 2 386 249 173 31 chr1 66591919 66592081 -215601583 - LTR1 LTR ERV1 -553 383 109 503 306 54 22 chr1 66592126 66592440 -215601224 + L1ME3A LINE L1 4628 4951 -1195 25 0 0 0 chr1 66592508 66592533 -215601131 + AT_rich Low_complexity Low_complexity 1 25 0 884 300 84 17 chr1 66592536 66593210 -215600454 + L1ME3A LINE L1 5145 5865 -305 631 239 136 37 chr1 66593230 66593473 -215600191 - LTR16A LTR ERVL -6 444 178 2173 118 0 0 chr1 66594721 66595040 -215598624 + AluSx SINE Alu 1 319 0 902 227 68 0 chr1 66595086 66595293 -215598371 - MIR SINE MIR 0 262 42 2007 143 0 0 chr1 66595449 66595752 -215597912 + AluJb SINE Alu 5 307 0 2016 139 73 6 chr1 66596383 66596700 -215596964 - MER1B DNA MER1_type -1 338 1 1639 180 21 7 chr1 66597222 66597506 -215596158 + AluJo SINE Alu 1 288 -24 668 272 136 79 chr1 66597710 66597860 -215595804 + HAL1 LINE L1 225 365 -2142 2123 103 7 0 chr1 66597860 66598142 -215595522 + AluSx SINE Alu 1 284 -28 495 0 0 0 chr1 66598142 66598197 -215595467 + (CA)n Simple_repeat Simple_repeat 2 56 0 357 24 0 0 chr1 66598196 66598238 -215595426 + (GA)n Simple_repeat Simple_repeat 2 43 0 668 272 136 79 chr1 66598197 66598490 -215595174 + HAL1 LINE L1 364 651 -1856 183 184 0 0 chr1 66598578 66598616 -215595048 + CT-rich Low_complexity Low_complexity 3 40 0 2328 164 7 33 chr1 66598621 66599078 -215594586 - L1MB7 LINE L1 -23 6161 5717 292 274 77 117 chr1 66600596 66601025 -215592639 - L2 LINE L2 0 3272 2827 252 0 0 0 chr1 66601025 66601053 -215592611 + (TG)n Simple_repeat Simple_repeat 2 29 0 292 274 77 117 chr1 66601053 66601181 -215592483 - L2 LINE L2 -445 2827 2747 2287 112 0 0 chr1 66601181 66601485 -215592179 + AluSg SINE Alu 1 304 -6 292 274 77 117 chr1 66601485 66601600 -215592064 - L2 LINE L2 -525 2747 2629 324 286 170 0 chr1 66601854 66601966 -215591698 + MIR3 SINE MIR 60 190 -18 534 266 103 25 chr1 66601968 66602171 -215591493 + MIR SINE MIR 6 224 -38 271 299 104 49 chr1 66602732 66602896 -215590768 + MIR3 SINE MIR 25 197 -11 279 269 85 21 chr1 66603591 66603732 -215589932 + L1MC/D LINE L1 5709 5858 -1950 1239 163 106 4 chr1 66606383 66606629 -215587035 - ORSL DNA AcHobo -4 271 1 508 269 51 41 chr1 66607681 66607878 -215585786 - MIR3 SINE MIR -3 205 7 583 228 117 19 chr1 66608506 66608576 -215585088 + MER58C DNA MER1_type 36 98 -2322 333 0 0 0 chr1 66608576 66608613 -215585051 + (CA)n Simple_repeat Simple_repeat 2 38 0 583 228 117 19 chr1 66608613 66608704 -215584960 + MER58C DNA MER1_type 98 213 -2 201 273 0 0 chr1 66611246 66611290 -215582374 + L2 LINE L2 3259 3302 -11 610 267 8 0 chr1 66611394 66611525 -215582139 + MER94 DNA DNA 3 134 0 23 0 0 0 chr1 66611528 66611551 -215582113 + AT_rich Low_complexity Low_complexity 1 23 0 242 282 148 74 chr1 66611563 66611712 -215581952 - MIR SINE MIR -81 181 22 530 233 187 41 chr1 66611996 66612215 -215581449 - MIR SINE MIR -10 252 2 451 269 125 29 chr1 66612569 66612777 -215580887 - MIR SINE MIR 0 262 35 1381 248 82 11 chr1 66613248 66613688 -215579976 - L1MEc LINE L1 -5890 506 36 233 285 69 62 chr1 66613974 66614118 -215579546 - L2 LINE L2 -2 3311 3167 345 318 63 16 chr1 66614272 66614398 -215579266 - L2 LINE L2 0 3272 3141 318 187 93 53 chr1 66614794 66614869 -215578795 + L2 LINE L2 3200 3277 -36 2022 127 0 39 chr1 66615380 66615688 -215577976 + AluSx SINE Alu 1 296 -16 186 43 0 0 chr1 66616185 66616208 -215577456 + (T)n Simple_repeat Simple_repeat 1 23 0 2340 112 0 3 chr1 66616208 66616522 -215577142 + AluSq SINE Alu 1 313 0 186 250 42 0 chr1 66619049 66619097 -215574567 + L2 LINE L2 3264 3313 0 2042 138 0 28 chr1 66619162 66619480 -215574184 + AluJb SINE Alu 1 309 -3 357 256 86 17 chr1 66619701 66619818 -215573846 + L2 LINE L2 3188 3312 -1 525 343 192 11 chr1 66619898 66620595 -215573069 + L3 LINE CR1 63 885 -692 825 260 48 19 chr1 66620678 66620886 -215572778 + MIR SINE MIR 5 218 -44 242 309 138 11 chr1 66621782 66621876 -215571788 + L2 LINE L2 2376 2481 -833 709 210 99 99 chr1 66621927 66622179 -215571485 + MIR SINE MIR 1 252 -10 449 301 43 18 chr1 66622600 66622763 -215570901 - MIR SINE MIR -24 238 72 862 83 8 8 chr1 66623657 66623778 -215569886 - AluSg/x SINE Alu -22 290 170 2338 91 0 7 chr1 66624261 66624570 -215569094 + AluY SINE Alu 1 307 -4 2099 94 35 0 chr1 66625754 66626040 -215567624 + AluSg SINE Alu 1 296 -14 301 244 250 42 chr1 66627356 66627524 -215566140 - MIR SINE MIR -6 256 54 412 280 128 55 chr1 66627609 66627827 -215565837 - L2 LINE L2 -48 3265 3032 682 284 118 34 chr1 66628130 66628486 -215565178 - L2 LINE L2 -12 3301 2916 309 273 268 27 chr1 66628494 66628677 -215564987 + MIR SINE MIR 36 262 0 1468 193 15 15 chr1 66629094 66629363 -215564301 - AluJo SINE Alu -30 282 14 2229 105 3 0 chr1 66629363 66629667 -215563997 + AluSx SINE Alu 1 305 -7 297 374 6 19 chr1 66629869 66630027 -215563637 + MIR SINE MIR 58 212 -50 2100 109 3 26 chr1 66630442 66630746 -215562918 - AluSx SINE Alu -15 297 1 2324 73 0 0 chr1 66632302 66632591 -215561073 - AluY SINE Alu -2 309 21 2603 48 0 0 chr1 66633900 66634209 -215559455 + AluY SINE Alu 1 309 -2 23 33 0 0 chr1 66634939 66634969 -215558695 + AT_rich Low_complexity Low_complexity 1 30 0 1321 142 15 0 chr1 66635546 66635751 -215557913 - AluJb SINE Alu -14 298 91 272 295 42 11 chr1 66635881 66635976 -215557688 - L3 LINE CR1 0 1577 1480 26 30 0 0 chr1 66636230 66636263 -215557401 + AT_rich Low_complexity Low_complexity 1 33 0 708 209 31 0 chr1 66636469 66636598 -215557066 + FLAM_A SINE Alu 1 133 0 3257 99 0 34 chr1 66637129 66637605 -215556059 + LTR46 LTR ERV1 1 460 0 22 94 0 0 chr1 66637904 66637968 -215555696 + AT_rich Low_complexity Low_complexity 1 64 0 26 88 0 0 chr1 66639766 66639834 -215553830 + AT_rich Low_complexity Low_complexity 1 68 0 1490 101 41 5 chr1 66640186 66640405 -215553259 - MER30 DNA MER1_type 0 230 4 2412 68 0 3 chr1 66640614 66640921 -215552743 + AluY SINE Alu 1 306 -5 285 228 89 25 chr1 66640957 66641036 -215552628 - L2 LINE L2 0 3313 3230 788 186 86 75 chr1 66641101 66641202 -215552462 + MER33 DNA MER1_type 15 113 -2472 2230 100 0 3 chr1 66641202 66641503 -215552161 + AluSg SINE Alu 1 300 -10 788 186 86 75 chr1 66641503 66641680 -215551984 + MER33 DNA MER1_type 113 296 -28 221 280 0 0 chr1 66641933 66641983 -215551681 - MIR3 SINE MIR -39 169 120 187 290 87 0 chr1 66642114 66642183 -215551481 + MIR3 SINE MIR 82 156 -52 1298 329 94 26 chr1 66642962 66643947 -215549717 + L2 LINE L2 2234 3295 -18 2120 97 7 0 chr1 66643957 66644247 -215549417 + AluSc SINE Alu 1 292 -17 885 213 0 0 chr1 66644287 66644451 -215549213 - FRAM SINE Alu -14 162 1 184 320 40 27 chr1 66644477 66644552 -215549112 - MIR SINE MIR -170 92 17 25 75 0 0 chr1 66644586 66644639 -215549025 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr1 66645370 66645392 -215548272 + AT_rich Low_complexity Low_complexity 1 22 0 312 290 97 7 chr1 66645729 66645874 -215547790 + MER117 DNA MER1_type 5 162 -35 421 311 118 4 chr1 66645962 66646216 -215547448 + L2 LINE L2 2304 2586 -728 457 222 211 6 chr1 66646285 66646456 -215547208 + L2 LINE L2 3107 3312 -1 203 253 21 116 chr1 66696478 66696540 -215497124 - L2 LINE L2 -215 3057 3005 2232 128 0 0 chr1 66696540 66696838 -215496826 + AluSx SINE Alu 1 298 -14 203 253 21 116 chr1 66696838 66696870 -215496794 - L2 LINE L2 -267 3005 2972 390 60 30 15 chr1 66696880 66696947 -215496717 + (GAAAA)n Simple_repeat Simple_repeat 3 70 0 566 289 127 11 chr1 66696947 66697191 -215496473 - L2 LINE L2 -308 3005 2740 431 331 41 25 chr1 66697932 66698246 -215495418 + LTR16C LTR ERVL 173 491 0 287 369 5 40 chr1 66698246 66698444 -215495220 - L2 LINE L2 -242 3030 2840 520 227 49 37 chr1 66699044 66699207 -215494457 - MER104 DNA Tc2 0 180 16 300 297 51 87 chr1 66699209 66699347 -215494317 + L2 LINE L2 3139 3271 -1 2186 145 68 31 chr1 66699353 66699766 -215493898 - MSTA LTR MaLR 0 428 1 410 304 74 15 chr1 66700857 66701027 -215492637 + MIR SINE MIR 10 190 -69 183 350 38 12 chr1 66702013 66702093 -215491571 + MIR SINE MIR 65 146 -116 580 249 174 28 chr1 66702502 66702823 -215490841 - MLT1J LTR MaLR -52 459 92 1192 271 91 58 chr1 66702825 66703607 -215490057 + L2 LINE L2 2477 3305 -8 368 259 46 0 chr1 66703620 66703728 -215489936 + MLT1K LTR MaLR 411 523 -65 1273 320 54 21 chr1 66703836 66704230 -215489434 - L2 LINE L2 -258 3055 2629 306 0 0 0 chr1 66704230 66704264 -215489400 + (TG)n Simple_repeat Simple_repeat 2 35 0 1273 320 54 21 chr1 66704264 66704541 -215489123 - L2 LINE L2 -684 2629 2363 2361 103 0 0 chr1 66705000 66705312 -215488352 - AluSx SINE Alu 0 312 1 492 126 0 35 chr1 66705343 66705430 -215488234 + HY4 scRNA scRNA 10 93 0 549 309 6 34 chr1 66705725 66705903 -215487761 + MIR SINE MIR 20 192 -70 1672 176 26 58 chr1 66706109 66706489 -215487175 - MLT1A2 LTR MaLR -6 368 1 2089 156 88 14 chr1 66706575 66707018 -215486646 - L1MB7 LINE L1 -8 6176 5701 811 295 97 55 chr1 66707978 66708491 -215485173 - MLT1H1 LTR MaLR -11 531 5 479 275 142 21 chr1 66708529 66708762 -215484902 - MIR SINE MIR -1 261 1 2263 123 0 0 chr1 66709239 66709540 -215484124 + AluSc SINE Alu 1 301 -8 268 267 11 0 chr1 66709602 66709692 -215483972 - MER20B DNA MER1_type -152 631 541 309 286 79 0 chr1 66709780 66709906 -215483758 - MER5C DNA MER1_type -188 136 1 * 555 219 0 9 chr1 66709906 66710017 -215483647 - MIR SINE MIR -64 198 89 839 232 17 34 chr1 66710876 66711113 -215482551 - MIR SINE MIR -11 251 19 2593 46 0 0 chr1 66711157 66711460 -215482204 + AluY SINE Alu 1 303 -8 330 147 77 35 chr1 66711876 66712046 -215481618 + (TA)n Simple_repeat Simple_repeat 1 177 0 256 235 22 44 chr1 66712042 66712225 -215481439 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 * 378 205 47 23 chr1 66712246 66712554 -215481110 + (TATAA)n Simple_repeat Simple_repeat 1 315 0 302 167 49 31 chr1 66712563 66712725 -215480939 + (TA)n Simple_repeat Simple_repeat 1 165 0 328 250 45 9 chr1 66712730 66712842 -215480822 + (TATATG)n Simple_repeat Simple_repeat 5 120 0 297 225 22 28 chr1 66712843 66713021 -215480643 + (TA)n Simple_repeat Simple_repeat 2 178 0 300 222 23 28 chr1 66713037 66713213 -215480451 + (TA)n Simple_repeat Simple_repeat 1 175 0 308 251 11 27 chr1 66713229 66713412 -215480252 + (TA)n Simple_repeat Simple_repeat 1 180 0 314 278 11 11 chr1 66713418 66713508 -215480156 - L1MC4 LINE L1 -1339 6703 6614 370 235 10 29 chr1 66713526 66713628 -215480036 + MIR SINE MIR 49 148 -114 448 96 51 45 chr1 66713637 66713814 -215479850 + (TA)n Simple_repeat Simple_repeat 1 178 0 455 208 35 29 chr1 66713822 66713995 -215479669 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 354 192 43 31 chr1 66714007 66714410 -215479254 + (TATAA)n Simple_repeat Simple_repeat 1 407 0 * 365 112 82 41 chr1 66714391 66714609 -215479055 + (TA)n Simple_repeat Simple_repeat 1 226 0 236 175 79 32 chr1 66714632 66714695 -215478969 - MIR SINE MIR -108 154 89 251 359 0 11 chr1 66715615 66715707 -215477957 - L2 LINE L2 -251 3021 2931 208 291 18 0 chr1 66715819 66715874 -215477790 - L2 LINE L2 -1 3312 3257 2163 125 20 0 chr1 66715926 66716230 -215477434 + AluSx SINE Alu 1 310 -2 2459 65 0 10 chr1 66716284 66716591 -215477073 + AluY SINE Alu 1 304 -7 239 316 42 11 chr1 66716900 66716995 -215476669 + L2 LINE L2 2553 2650 -664 2634 125 29 2 chr1 66717302 66717717 -215475947 - MSTA LTR MaLR -2 426 1 2555 119 53 12 chr1 66717918 66718329 -215475335 - MSTA LTR MaLR 0 428 1 2373 85 3 0 chr1 66718350 66718643 -215475021 + AluSp SINE Alu 2 295 -18 239 229 29 14 chr1 66718668 66718738 -215474926 - LTR33A LTR ERVL -9 514 444 2198 153 18 20 chr1 66719014 66719405 -215474259 + MLT1B LTR MaLR 1 390 0 298 361 41 0 chr1 66719843 66719940 -215473724 + L2 LINE L2 3179 3279 -34 252 305 88 73 chr1 66720222 66720494 -215473170 - L2 LINE L2 -159 3113 2838 237 217 121 0 chr1 66720574 66720657 -215473007 + L1ME LINE L1 5713 5805 -316 301 109 0 0 chr1 66720746 66720792 -215472872 - MADE1 DNA Mariner -34 46 1 2100 113 6 22 chr1 66720904 66721246 -215472418 + AluSg SINE Alu 1 310 0 383 325 86 0 chr1 66721878 66721995 -215471669 + L2 LINE L2 3145 3271 -1 621 306 106 4 chr1 66722020 66722275 -215471389 - L3 LINE CR1 -340 1237 957 274 330 83 9 chr1 66722460 66722569 -215471095 - MIR SINE MIR -24 238 122 367 313 11 11 chr1 66722571 66722702 -215470962 + MIR SINE MIR 56 185 -62 201 163 93 0 chr1 66723333 66723376 -215470288 - L3 LINE CR1 -5 1572 1526 566 325 42 45 chr1 66723379 66723714 -215469950 + MER102b DNA MER1_type 4 337 -4 481 210 143 0 chr1 66723717 66723836 -215469828 - MIR3 SINE MIR -43 165 30 230 276 44 0 chr1 66724227 66724240 -215469424 + MIR SINE MIR 97 108 -100 2296 45 0 32 chr1 66724240 66724549 -215469115 + AluY SINE Alu 1 299 -12 230 276 44 0 chr1 66724549 66724617 -215469047 + MIR SINE MIR 108 151 -57 525 254 9 0 chr1 66724845 66724955 -215468709 + MER5B DNA MER1_type 13 123 -55 419 206 200 31 chr1 66725214 66725374 -215468290 + MLT1L LTR MaLR 104 290 -325 303 267 0 35 chr1 66725550 66725636 -215468028 - MIR SINE MIR -6 256 174 2142 106 0 0 chr1 66725677 66725980 -215467684 - AluSx SINE Alu -9 303 1 492 288 35 29 chr1 66726000 66726170 -215467494 + MIR SINE MIR 78 248 -14 386 275 14 42 chr1 66726222 66726337 -215467327 - MIR SINE MIR -67 141 47 1691 100 0 4 chr1 66726337 66726567 -215467097 - AluSg/x SINE Alu -11 301 73 386 275 14 42 chr1 66726567 66726596 -215467068 - MIR SINE MIR -161 47 19 690 281 148 54 chr1 66726809 66727214 -215466450 - L3 LINE CR1 -1 1576 1134 36 40 0 0 chr1 66727964 66728014 -215465650 + AT_rich Low_complexity Low_complexity 1 50 0 207 284 98 20 chr1 66728846 66728948 -215464716 - MIR SINE MIR -26 236 127 640 357 71 31 chr1 66728974 66729647 -215464017 + L2 LINE L2 2148 2847 -467 460 283 8 17 chr1 66729666 66729786 -215463878 + L2 LINE L2 2948 3066 -206 518 310 90 24 chr1 66729794 66730129 -215463535 + LTR33 LTR ERVL 165 521 0 660 183 63 16 chr1 66730347 66730473 -215463191 + FLAM_C SINE Alu 2 133 -10 442 299 97 0 chr1 66730492 66730626 -215463038 + L2 LINE L2 3126 3272 0 422 205 0 0 chr1 66730832 66730910 -215462754 + AluJ/FLAM SINE Alu 1 78 -224 624 178 47 0 chr1 66730915 66731044 -215462620 + AluJo SINE Alu 5 139 -173 318 275 37 0 chr1 66731051 66731160 -215462504 + 5S rRNA rRNA 9 121 0 2071 86 3 36 chr1 66731179 66731483 -215462181 + AluSp SINE Alu 20 313 0 1004 166 17 0 chr1 66731485 66731660 -215462004 + AluJo SINE Alu 131 308 -4 542 322 35 20 chr1 66732145 66732344 -215461320 + MIR SINE MIR 2 203 -59 390 310 134 43 chr1 66732318 66732800 -215460864 + L2 LINE L2 2766 3272 0 * 619 274 212 0 chr1 66733187 66733399 -215460265 + MIR SINE MIR 6 262 0 297 311 80 26 chr1 66733410 66733561 -215460103 + MIR SINE MIR 75 233 -29 300 289 121 51 chr1 66733617 66733949 -215459715 + L2 LINE L2 1474 1828 -1486 263 341 11 0 chr1 66734618 66734709 -215458955 - MIR SINE MIR -51 211 120 225 262 149 65 chr1 66734739 66734846 -215458818 - MIR SINE MIR -21 241 126 * 233 280 91 103 chr1 66734835 66734969 -215458695 + MIR SINE MIR 16 150 -58 2215 106 3 0 chr1 66734969 66735272 -215458392 + AluSg SINE Alu 1 304 -6 233 280 91 103 chr1 66735272 66735312 -215458352 + MIR SINE MIR 150 189 -19 1927 128 10 7 chr1 66735530 66735827 -215457837 - AluSx SINE Alu -14 298 1 464 284 167 0 chr1 66735899 66736061 -215457603 + MIR SINE MIR 74 262 0 382 242 99 0 chr1 66736624 66736715 -215456949 - L2 LINE L2 -19 3294 3195 341 308 11 8 chr1 66736750 66736869 -215456795 - MIR SINE MIR -83 125 3 406 240 149 19 chr1 66737142 66737296 -215456368 + MIR3 SINE MIR 25 198 -10 242 328 180 0 chr1 66737555 66737677 -215455987 + L2 LINE L2 3129 3272 0 256 286 14 29 chr1 66737786 66737856 -215455808 - MIR SINE MIR -138 124 56 382 270 66 29 chr1 66737968 66738105 -215455559 + MIR SINE MIR 13 154 -108 364 321 99 8 chr1 66739627 66739758 -215453906 + MIR3 SINE MIR 2 144 -64 448 310 39 7 chr1 66739858 66740013 -215453651 + MIR SINE MIR 103 262 0 302 267 164 30 chr1 66740647 66740812 -215452852 - MIR SINE MIR -26 236 50 443 298 72 34 chr1 66741537 66741745 -215451919 - L1ME4a LINE L1 -1 6120 5905 576 224 97 12 chr1 66742127 66742292 -215451372 + MIR SINE MIR 79 257 -5 372 290 166 7 chr1 66742410 66742555 -215451109 + MER5A DNA MER1_type 16 183 -6 406 271 81 81 chr1 66742737 66742984 -215450680 + MIR SINE MIR 10 256 -6 310 338 110 0 chr1 66742985 66743121 -215450543 + MIR3 SINE MIR 37 187 -21 2656 10 0 0 chr1 66743277 66743575 -215450089 - AluYa5 SINE Alu -13 298 1 2311 51 0 39 chr1 66743765 66744077 -215449587 + AluY SINE Alu 12 311 0 250 303 15 0 chr1 66744300 66744366 -215449298 - L2 LINE L2 0 3272 3206 364 207 92 23 chr1 66744406 66744493 -215449171 + Charlie8 DNA MER1_type 128 220 -2197 184 320 0 0 chr1 66744840 66744890 -215448774 - L2 LINE L2 -219 3053 3004 636 314 87 73 chr1 66745139 66745994 -215447670 - L2 LINE L2 -3 3310 2402 647 325 6 18 chr1 66746016 66746185 -215447479 + MER91A DNA MER1_type 2 168 -28 350 325 135 12 chr1 66746519 66746682 -215446982 - MIR3 SINE MIR -11 197 15 609 271 117 5 chr1 66746729 66746917 -215446747 + MIR SINE MIR 20 228 -34 858 221 0 0 chr1 66747882 66748040 -215445624 + MER96 DNA MER1_type? 18 175 0 558 279 197 21 chr1 66748093 66748326 -215445338 - MLT1J LTR MaLR -3 508 235 26 30 0 0 chr1 66748350 66748383 -215445281 + AT_rich Low_complexity Low_complexity 1 33 0 346 234 55 55 chr1 66748952 66749080 -215444584 + LTR67 LTR ERVL 428 555 -2 360 328 0 49 chr1 66749476 66749598 -215444066 + L2 LINE L2 3196 3311 -2 215 293 111 20 chr1 66750156 66750255 -215443409 - MIR SINE MIR -4 258 151 830 244 143 58 chr1 66750309 66750686 -215442978 + MLT1J LTR MaLR 99 507 -4 556 313 159 26 chr1 66750745 66751084 -215442580 + MLT1J2 LTR MaLR 67 450 0 270 281 24 12 chr1 66751084 66751166 -215442498 - MIR SINE MIR -117 145 63 230 326 193 0 chr1 66751888 66752023 -215441641 - MIR SINE MIR -24 238 78 272 360 62 12 chr1 66753496 66753657 -215440007 + MIR SINE MIR 32 200 -62 3962 13 2 0 chr1 66753691 66754228 -215439436 - L1PA3 LINE L1 -452 5703 5166 3959 24 4 0 chr1 66754228 66754684 -215438980 + L1PA3 LINE L1 5697 6155 0 2245 104 0 0 chr1 66754916 66755224 -215438440 - AluSc SINE Alu -1 308 1 568 278 94 45 chr1 66755437 66755660 -215438004 + MLT1K LTR MaLR 26 259 -329 429 304 112 14 chr1 66755723 66755937 -215437727 + MLT1K LTR MaLR 354 588 0 504 218 54 40 chr1 66755938 66756121 -215437543 - MIR SINE MIR -26 236 45 255 61 0 0 chr1 66756840 66756873 -215436791 + (TG)n Simple_repeat Simple_repeat 2 34 0 465 254 91 55 chr1 66756937 66757157 -215436507 - MIR SINE MIR -26 236 9 279 302 63 8 chr1 66757241 66757367 -215436297 + MIR SINE MIR 63 195 -67 202 268 0 0 chr1 66757533 66757574 -215436090 + L2 LINE L2 3214 3254 -18 689 233 59 132 chr1 66757678 66758034 -215435630 - MLT1I LTR MaLR -6 403 74 588 299 89 50 chr1 66758050 66758408 -215435256 + MLT1L LTR MaLR 156 527 -88 231 345 92 59 chr1 66759280 66759584 -215434080 + L2 LINE L2 2838 3151 -121 1984 130 10 7 chr1 66759603 66759911 -215433753 - AluSx SINE Alu -3 309 1 277 338 135 46 chr1 66760739 66761109 -215432555 + L2 LINE L2 2826 3228 -44 407 352 95 57 chr1 66761855 66762204 -215431460 - L2 LINE L2 -1 3271 2910 205 171 0 0 chr1 66763626 66763661 -215430003 + GA-rich Low_complexity Low_complexity 2 36 0 208 224 0 60 chr1 66767320 66767387 -215426277 + C-rich Low_complexity Low_complexity 1 63 0 206 326 84 0 chr1 66768451 66768546 -215425118 + MIR SINE MIR 36 138 -70 228 168 63 137 chr1 66769034 66769129 -215424535 - L2 LINE L2 -23 3249 3162 620 245 126 16 chr1 66769213 66769443 -215424221 - MIR SINE MIR 0 262 15 209 345 55 35 chr1 66769690 66769835 -215423829 + L2 LINE L2 2702 2849 -465 993 249 105 35 chr1 66769842 66770215 -215423449 - MLT1I LTR MaLR -4 405 7 1936 85 4 0 chr1 66770763 66771022 -215422642 - AluSp SINE Alu -14 299 40 1361 222 59 45 chr1 66771518 66771892 -215421772 - MLT1I LTR MaLR 0 409 31 416 310 46 61 chr1 66771909 66771993 -215421671 - MLT1I LTR MaLR -18 391 307 2363 133 23 0 chr1 66771993 66772347 -215421317 + THE1B LTR MaLR 3 364 0 416 310 46 61 chr1 66772347 66772459 -215421205 - MLT1I LTR MaLR -102 307 198 476 248 64 111 chr1 66772676 66772974 -215420690 + L2 LINE L2 2985 3268 -4 385 230 60 0 chr1 66773168 66773268 -215420396 - MLT1I LTR MaLR 0 409 304 1000 240 26 39 chr1 66773292 66773600 -215420064 - MLT1I LTR MaLR -44 365 62 2506 138 18 28 chr1 66773999 66774435 -215419229 - MSTB1 LTR MaLR 0 432 1 274 347 40 16 chr1 66774814 66774938 -215418726 + L2 LINE L2 3134 3260 -12 273 284 164 35 chr1 66775071 66775187 -215418477 - L3 LINE CR1 -9 1568 1438 344 327 135 36 chr1 66775194 66775579 -215418085 + L3 LINE CR1 1005 1427 -150 586 269 72 16 chr1 66775955 66776148 -215417516 + MLT1J1 LTR MaLR 1 204 -242 462 283 57 28 chr1 66776145 66776322 -215417342 + MLT1J2 LTR MaLR 249 430 -20 * 273 343 88 56 chr1 66776637 66777045 -215416619 - L2 LINE L2 0 3272 2852 291 261 127 24 chr1 66777116 66777281 -215416383 + L1ME4a LINE L1 5938 6119 -2 839 209 126 41 chr1 66777869 66778163 -215415501 - MLT1I LTR MaLR -18 391 96 225 193 11 11 chr1 66778201 66778256 -215415408 + MIR SINE MIR 96 149 -113 257 301 20 65 chr1 66778259 66778412 -215415252 + L1ME4a LINE L1 5774 5919 -202 279 206 0 98 chr1 66778471 66778563 -215415101 - MIR SINE MIR 0 262 180 361 282 8 48 chr1 66779068 66779192 -215414472 - MLT1H LTR MaLR -329 220 102 180 343 86 29 chr1 66779749 66779889 -215413775 - MIR3 SINE MIR -57 151 4 473 241 54 27 chr1 66780230 66780454 -215413210 + MER113 DNA MER1_type? 3 232 -289 313 254 65 29 chr1 66780533 66780671 -215412993 + MIR SINE MIR 26 168 -94 213 39 0 0 chr1 66780671 66780697 -215412967 + (TG)n Simple_repeat Simple_repeat 2 27 0 230 250 15 59 chr1 66780875 66780943 -215412721 - L2 LINE L2 -25 3247 3183 * 299 290 121 3 chr1 66780937 66781078 -215412586 + MIR SINE MIR 28 183 -64 2872 48 3 0 chr1 66781203 66781591 -215412073 + L1PA4 LINE L1 5803 6155 0 366 138 0 32 chr1 66782724 66782818 -215410846 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 681 188 6 11 chr1 66782829 66783005 -215410659 + CT-rich Low_complexity Low_complexity 1 175 0 203 259 0 25 chr1 66782996 66783077 -215410587 + C-rich Low_complexity Low_complexity 3 81 0 * 309 276 31 20 chr1 66783078 66783176 -215410488 - L2 LINE L2 -19 3294 3196 686 300 62 0 chr1 66783184 66783411 -215410253 + MIR SINE MIR 12 252 -10 207 214 0 0 chr1 66783678 66783720 -215409944 - L2 LINE L2 -244 3069 3028 3377 58 7 2 chr1 66784189 66784619 -215409045 - L1PA8 LINE L1 -3 6169 5738 232 227 0 0 chr1 66785075 66785119 -215408545 + MIR3 SINE MIR 149 192 -16 195 42 0 0 chr1 66785451 66785475 -215408189 + (CA)n Simple_repeat Simple_repeat 1 24 0 216 67 0 0 chr1 66785475 66785505 -215408159 + (GA)n Simple_repeat Simple_repeat 1 30 0 384 22 0 0 chr1 66785869 66785914 -215407750 + (ATG)n Simple_repeat Simple_repeat 3 47 0 516 256 54 6 chr1 66785922 66786090 -215407574 - MIR SINE MIR -84 178 3 209 33 33 0 chr1 66787110 66787140 -215406524 + (TG)n Simple_repeat Simple_repeat 2 32 0 565 200 16 16 chr1 66787337 66787462 -215406202 + MIR SINE MIR 52 176 -86 300 319 52 0 chr1 66787536 66787652 -215406012 + MIR SINE MIR 20 141 -121 862 260 115 59 chr1 66787953 66788293 -215405371 + L2 LINE L2 2583 2902 -411 504 93 0 0 chr1 66788293 66788368 -215405296 + (CA)n Simple_repeat Simple_repeat 2 76 0 862 260 115 59 chr1 66788368 66788687 -215404977 + L2 LINE L2 2902 3305 -8 389 305 61 33 chr1 66789215 66789428 -215404236 + MIR SINE MIR 40 257 -5 1489 224 47 66 chr1 66789660 66790129 -215403535 - MLT1C LTR MaLR -2 465 6 357 269 115 99 chr1 66790258 66790581 -215403083 - L2 LINE L2 0 3272 2945 342 250 0 12 chr1 66790817 66790901 -215402763 - L1ME3A LINE L1 -16 6154 6072 224 395 9 18 chr1 66791016 66791130 -215402534 + MIR SINE MIR 16 128 -80 2547 60 0 10 chr1 66791690 66792004 -215401660 + AluY SINE Alu 1 311 0 362 316 78 10 chr1 66792223 66792416 -215401248 - MIR SINE MIR -56 206 1 439 314 84 0 chr1 66792784 66792975 -215400689 - MIR SINE MIR 0 262 56 249 202 71 36 chr1 66793100 66793184 -215400480 + Charlie2 DNA MER1_type 199 285 -2577 204 169 0 138 chr1 66793802 66793867 -215399797 + MIR SINE MIR 81 136 -72 539 252 16 0 chr1 66794222 66794349 -215399315 - L2 LINE L2 -1 3312 3184 224 208 57 0 chr1 66794423 66794476 -215399188 + L2 LINE L2 3258 3313 0 273 300 179 14 chr1 66794924 66795064 -215398600 + MIR SINE MIR 20 182 -80 767 273 64 44 chr1 66795379 66795728 -215397936 - L2 LINE L2 -2 3270 2916 202 297 0 40 chr1 66795793 66795867 -215397797 - L2 LINE L2 -558 2756 2686 246 202 24 71 chr1 66796331 66796415 -215397249 + MIR SINE MIR 104 183 -79 354 224 47 28 chr1 66796489 66796596 -215397068 - MIR SINE MIR -93 169 61 298 182 218 27 chr1 66796857 66796967 -215396697 + L2 LINE L2 3138 3268 -4 318 278 134 10 chr1 66797879 66798073 -215395591 + MIR SINE MIR 31 248 -14 308 304 57 13 chr1 66798703 66798861 -215394803 - MIR SINE MIR -77 185 21 3340 154 12 7 chr1 66799808 66800373 -215393291 + L1PA16 LINE L1 5587 6154 -12 1773 174 3 13 chr1 66800373 66800684 -215392980 + AluJo SINE Alu 1 308 -4 556 243 49 0 chr1 66800713 66800857 -215392807 + MIR SINE MIR 68 218 -44 273 268 122 8 chr1 66800907 66801030 -215392634 + MIR SINE MIR 46 182 -80 787 242 62 0 chr1 66801069 66801280 -215392384 - MIR SINE MIR -21 241 18 205 184 0 0 chr1 66802354 66802392 -215391272 - L2 LINE L2 -8 3305 3268 * 335 298 176 15 chr1 66802358 66802580 -215391084 - MIR SINE MIR -6 256 4 2293 112 3 6 chr1 66803366 66803678 -215389986 - AluSq SINE Alu -2 311 1 255 132 0 0 chr1 66803783 66803821 -215389843 + L2 LINE L2 3222 3259 -13 387 0 0 0 chr1 66803822 66803865 -215389799 + (CA)n Simple_repeat Simple_repeat 2 44 0 1111 295 58 12 chr1 66804134 66804551 -215389113 - L2 LINE L2 -1 3312 2877 252 177 11 18 chr1 66805459 66805528 -215388136 + MIR SINE MIR 60 130 -78 185 267 211 22 chr1 66806120 66806210 -215387454 + MIR3 SINE MIR 50 156 -52 182 333 46 11 chr1 66806311 66806398 -215387266 + MIR SINE MIR 59 148 -114 381 323 88 31 chr1 66806604 66806830 -215386834 + MIR SINE MIR 21 259 -3 282 282 25 74 chr1 66807123 66807286 -215386378 + MIR SINE MIR 83 237 -25 186 321 18 0 chr1 66807259 66807315 -215386349 + L2 LINE L2 3215 3271 -1 * 665 207 34 34 chr1 66807438 66807617 -215386047 - MER97b DNA MER1_type? -874 179 1 202 316 123 0 chr1 66808368 66808482 -215385182 + L2 LINE L2 2910 3037 -235 33 80 0 0 chr1 66808522 66808597 -215385067 + AT_rich Low_complexity Low_complexity 1 75 0 2384 83 20 7 chr1 66808613 66808915 -215384749 - AluSg SINE Alu -4 306 1 309 231 0 0 chr1 66808986 66809051 -215384613 + MIR SINE MIR 198 262 0 213 143 122 20 chr1 66809135 66809184 -215384480 + L2 LINE L2 3155 3208 -64 285 297 33 22 chr1 66809295 66809438 -215384226 + MIR SINE MIR 21 164 -63 455 241 83 55 chr1 66810507 66810868 -215382796 + L1M4 LINE L1 2923 3293 -2853 286 371 11 0 chr1 66810957 66811046 -215382618 - MIR SINE MIR -81 127 38 2173 142 12 15 chr1 66811122 66811460 -215382204 + MER1B DNA MER1_type 1 337 0 1575 173 52 74 chr1 66811481 66811902 -215381762 - MLT1C LTR MaLR -52 415 4 297 276 99 86 chr1 66812023 66812407 -215381257 + L3 LINE CR1 1018 1406 -171 361 241 253 0 chr1 66812919 66813006 -215380658 + MER81 DNA DNA 1 109 -5 298 289 93 0 chr1 66813138 66813235 -215380429 + L2 LINE L2 3200 3305 -8 2194 145 9 3 chr1 66813236 66813581 -215380083 + MER7A DNA MER2_type 1 345 -1 327 274 62 9 chr1 66814323 66814436 -215379228 - MIR SINE MIR -108 154 36 468 248 46 0 chr1 66814910 66815019 -215378645 + MIR3 SINE MIR 43 156 -52 263 304 81 69 chr1 66815173 66815433 -215378231 - MLT1K LTR MaLR -15 573 311 355 277 68 53 chr1 66815511 66815717 -215377947 - MLT1K LTR MaLR -254 334 126 223 286 66 0 chr1 66816164 66816255 -215377409 - L2 LINE L2 -298 2974 2878 285 330 67 88 chr1 66817247 66817486 -215376178 - L2 LINE L2 -6 3266 3033 569 271 29 38 chr1 66817929 66818139 -215375525 - MIR SINE MIR -48 214 7 541 313 75 9 chr1 66819185 66819412 -215374252 + MIR SINE MIR 7 248 -14 344 277 131 40 chr1 66819430 66819780 -215373884 - L3 LINE CR1 -475 1102 721 224 275 12 0 chr1 66819998 66820078 -215373586 + MIR SINE MIR 138 218 -44 1410 210 123 40 chr1 66820084 66820219 -215373445 - LTR40b LTR ERVL -2 460 338 1366 231 30 0 chr1 66820219 66820396 -215373268 - AluJo SINE Alu -4 308 117 288 53 0 0 chr1 66820396 66820434 -215373230 + (TG)n Simple_repeat Simple_repeat 2 39 0 1366 231 30 0 chr1 66820434 66820554 -215373110 - AluJo SINE Alu -195 117 2 1410 210 123 40 chr1 66820554 66820841 -215372823 - LTR40b LTR ERVL -124 338 3 328 231 46 69 chr1 66821162 66821335 -215372329 + L2 LINE L2 2915 3083 -189 656 248 0 0 chr1 66821639 66821768 -215371896 + FLAM_A SINE Alu 5 133 0 482 239 26 58 chr1 66822335 66822490 -215371174 + MIR SINE MIR 113 262 0 402 285 76 6 chr1 66822575 66822733 -215370931 + MIR SINE MIR 79 247 -15 441 290 7 0 chr1 66823692 66823830 -215369834 + MIR3 SINE MIR 60 198 -10 351 299 132 11 chr1 66824017 66824191 -215369473 - MIR SINE MIR -20 242 48 454 266 16 8 chr1 66825005 66825133 -215368531 - L2 LINE L2 -1 3312 3184 1552 227 105 16 chr1 66825150 66825577 -215368087 - MLT1C LTR MaLR -2 465 1 224 265 20 51 chr1 66825693 66825791 -215367873 + MIR SINE MIR 101 195 -67 252 100 0 0 chr1 66825888 66825928 -215367736 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 313 317 0 0 chr1 66825928 66826032 -215367632 - L2 LINE L2 -17 3296 3193 1995 200 28 85 chr1 66826038 66826582 -215367082 + MLT2B1 LTR ERVL 1 513 -7 236 226 20 88 chr1 66826637 66826739 -215366925 - MIR SINE MIR -60 202 108 1382 118 39 0 chr1 66826858 66827061 -215366603 - AluSx SINE Alu -7 305 95 234 176 0 0 chr1 66827063 66827114 -215366550 + T-rich Low_complexity Low_complexity 1 51 0 917 65 0 0 chr1 66827115 66827223 -215366441 - AluSx SINE Alu -205 108 1 367 361 38 9 chr1 66827850 66828063 -215365601 + MIR SINE MIR 30 248 -14 1462 162 95 46 chr1 66828075 66828402 -215365262 + MER2 DNA MER2_type 1 343 -1 24 0 0 0 chr1 66828896 66828920 -215364744 + AT_rich Low_complexity Low_complexity 1 24 0 193 324 29 0 chr1 66829402 66829470 -215364194 + L2 LINE L2 3242 3311 -2 2354 100 3 0 chr1 66829861 66830162 -215363502 + AluSp SINE Alu 1 302 -11 267 234 128 11 chr1 66830225 66830319 -215363345 + MIR SINE MIR 34 138 -124 631 241 128 5 chr1 66830547 66830742 -215362922 - MIR SINE MIR -16 246 28 223 231 77 15 chr1 66831320 66831385 -215362279 - MIR SINE MIR -71 191 123 665 272 26 5 chr1 66831390 66831581 -215362083 - MIR SINE MIR -60 202 8 278 239 80 0 chr1 66831583 66831671 -215361993 - MIR SINE MIR -77 185 91 302 297 139 7 chr1 66832681 66832834 -215360830 - MIR SINE MIR -58 204 34 201 213 0 0 chr1 66833134 66833181 -215360483 + CT-rich Low_complexity Low_complexity 2 48 0 552 276 16 42 chr1 66833214 66833406 -215360258 - MIR SINE MIR -41 221 35 343 291 10 48 chr1 66833522 66833681 -215359983 - MIR SINE MIR -68 140 34 279 0 0 0 chr1 66833795 66833826 -215359838 + (TG)n Simple_repeat Simple_repeat 2 32 0 251 298 71 24 chr1 66834618 66834786 -215358878 + L2 LINE L2 3017 3192 -121 192 239 0 0 chr1 66834815 66834861 -215358803 + L2 LINE L2 3263 3308 -5 867 235 107 13 chr1 66834920 66835154 -215358510 - MIR SINE MIR 0 262 7 204 227 0 45 chr1 66835392 66835458 -215358206 + GA-rich Low_complexity Low_complexity 4 66 0 265 263 113 38 chr1 66835623 66835756 -215357908 - MIR SINE MIR -70 192 50 299 286 0 0 chr1 66837347 66837424 -215356240 - MIR SINE MIR -63 145 72 189 369 8 31 chr1 66837437 66837567 -215356097 + L2 LINE L2 3187 3313 0 334 282 141 7 chr1 66838098 66838247 -215355417 - MIR SINE MIR -74 188 20 366 309 0 0 chr1 66839021 66839115 -215354549 + MIR SINE MIR 29 122 -140 197 370 0 0 chr1 66889512 66889566 -215304098 + L3 LINE CR1 1410 1463 -114 470 287 57 0 chr1 66889647 66889804 -215303860 + MIR SINE MIR 96 261 -1 456 263 30 66 chr1 66889928 66890126 -215303538 - MIR3 SINE MIR -1 207 17 914 292 5 5 chr1 66890215 66890431 -215303233 - MIR SINE MIR -45 217 2 478 224 60 0 chr1 66890771 66890887 -215302777 + MIR SINE MIR 82 204 -58 579 252 21 70 chr1 66891021 66891263 -215302401 - MIR SINE MIR -1 261 32 225 321 18 0 chr1 66892369 66892425 -215301239 + L3 LINE CR1 1418 1474 -103 512 220 92 43 chr1 66892760 66892901 -215300763 - L2 LINE L2 -5 3308 3161 1726 121 3 90 chr1 66892996 66893318 -215300346 + AluSx SINE Alu 1 294 -18 773 276 117 0 chr1 66893575 66893789 -215299875 + MIR SINE MIR 8 246 -16 250 321 121 107 chr1 66893792 66894147 -215299517 + L2 LINE L2 2913 3272 0 191 196 98 0 chr1 66894149 66894200 -215299464 - MIR SINE MIR -71 137 82 * 297 276 128 45 chr1 66894197 66894353 -215299311 + MIR SINE MIR 50 218 -44 * 622 291 143 18 chr1 66894332 66894555 -215299109 + MIR SINE MIR 6 256 -6 959 251 74 17 chr1 66895742 66896041 -215297623 - L1ME1 LINE L1 -5 6161 5846 339 284 129 12 chr1 66896174 66896349 -215297315 + MIR SINE MIR 34 211 -22 369 323 128 22 chr1 66897042 66897268 -215296396 - MIR SINE MIR -2 260 11 1923 132 0 14 chr1 66897325 66897621 -215296043 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr1 66897621 66897651 -215296013 + AT_rich Low_complexity Low_complexity 1 30 0 365 241 36 51 chr1 66897687 66897824 -215295840 - MER103 DNA DNA -1 165 31 244 274 0 0 chr1 66898131 66898193 -215295471 + MIR SINE MIR 83 144 -64 676 300 43 8 chr1 66898327 66898552 -215295112 - MIR SINE MIR -1 261 35 214 98 39 0 chr1 66898640 66898691 -215294973 + T-rich Low_complexity Low_complexity 3 55 0 345 228 44 94 chr1 66898873 66898965 -215294699 + L2 LINE L2 2617 2697 -617 2254 104 0 0 chr1 66898965 66899274 -215294390 + AluSc SINE Alu 1 309 0 345 228 44 94 chr1 66899274 66899361 -215294303 + L2 LINE L2 2697 2787 -527 809 73 23 23 chr1 66899428 66899689 -215293975 + (TCTA)n Simple_repeat Simple_repeat 1 261 0 1792 184 9 26 chr1 66899689 66900036 -215293628 - MLT2C1 LTR ERVL -53 344 4 193 224 321 50 chr1 66900053 66900330 -215293334 + L2 LINE L2 2810 3161 -111 548 255 20 39 chr1 66900457 66900610 -215293054 + L2 LINE L2 3164 3313 0 307 268 24 101 chr1 66900628 66900713 -215292951 - L2 LINE L2 -4 3309 3242 3054 77 19 12 chr1 66900713 66901140 -215292524 + L1PA11 LINE L1 5745 6174 0 307 268 24 101 chr1 66901140 66901222 -215292442 - L2 LINE L2 -71 3242 3155 216 220 0 17 chr1 66901233 66901292 -215292372 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 283 169 28 0 chr1 66901299 66901370 -215292294 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 224 335 65 87 chr1 66901421 66901606 -215292058 + MIR SINE MIR 26 206 -56 642 309 0 64 chr1 66901735 66901984 -215291680 + MIR SINE MIR 28 260 -2 831 199 15 80 chr1 66903168 66903369 -215290295 + MER5A DNA MER1_type 1 188 -1 679 281 47 20 chr1 66903369 66903622 -215290042 + MIR SINE MIR 3 262 0 224 354 43 18 chr1 66903957 66904121 -215289543 + L2 LINE L2 734 901 -2413 380 180 60 50 chr1 66904251 66904351 -215289313 + MLT1I LTR MaLR 304 404 -5 286 293 38 19 chr1 66904353 66904459 -215289205 + MIR SINE MIR 155 262 0 186 43 0 0 chr1 66904764 66904787 -215288877 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 510 191 43 99 chr1 66905676 66905838 -215287826 - ORSL DNA AcHobo -122 153 1 229 216 0 0 chr1 66905839 66905907 -215287757 + MIR SINE MIR 101 167 -66 725 221 89 0 chr1 66906225 66906383 -215287281 - MER45A DNA AcHobo -6 172 1 610 248 0 0 chr1 66906474 66906607 -215287057 - MIR SINE MIR -21 241 109 224 286 153 0 chr1 66907047 66907145 -215286519 + L2 LINE L2 2696 2808 -506 458 353 111 34 chr1 66907192 66907543 -215286121 + L2 LINE L2 2890 3267 -5 1038 278 144 39 chr1 66907610 66908200 -215285464 + HAL1 LINE L1 1833 2484 -23 379 241 293 0 chr1 66908903 66909036 -215284628 - MIR SINE MIR -3 259 88 2284 133 109 13 chr1 66909093 66909544 -215284120 + L1MB3 LINE L1 5686 6179 -4 216 0 0 0 chr1 66909544 66909568 -215284096 + (T)n Simple_repeat Simple_repeat 1 24 0 330 107 0 0 chr1 66909674 66909730 -215283934 + L1MB4 LINE L1 6124 6179 -1 2001 112 14 0 chr1 66909738 66909912 -215283752 - AluY SINE Alu -13 298 117 372 22 0 0 chr1 66909912 66909957 -215283707 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 2001 112 14 0 chr1 66909957 66910076 -215283588 - AluY SINE Alu -194 117 1 947 166 17 38 chr1 66910100 66910335 -215283329 + L1MB4 LINE L1 5951 6180 0 1228 196 80 42 chr1 66910683 66910995 -215282669 + MER2 DNA MER2_type 22 345 0 452 262 146 24 chr1 66910997 66911161 -215282503 - MIR SINE MIR -42 220 37 597 306 26 39 chr1 66911411 66911643 -215282021 + MIR SINE MIR 10 238 -24 286 305 48 9 chr1 66911686 66911791 -215281873 + MIR SINE MIR 85 193 -69 221 143 0 0 chr1 66912034 66912069 -215281595 + L2 LINE L2 3267 3301 -12 442 321 118 38 chr1 66912520 66912782 -215280882 - L2 LINE L2 -5 3267 2985 239 302 19 28 chr1 66912849 66912955 -215280709 + L2 LINE L2 3160 3264 -49 274 289 36 0 chr1 66912973 66913056 -215280608 - L2 LINE L2 -290 2982 2897 762 180 7 14 chr1 66913755 66913894 -215279770 - FLAM_C SINE Alu 0 143 6 234 255 0 0 chr1 66914205 66914252 -215279412 + polypyrimidine Low_complexity Low_complexity 3 49 0 2026 119 0 0 chr1 66914476 66914773 -215278891 + AluSc SINE Alu 5 301 0 2186 123 42 0 chr1 66914808 66915140 -215278524 - MER7A DNA MER2_type -1 345 2 182 297 78 47 chr1 66915178 66915306 -215278358 - MIR3 SINE MIR -23 185 54 496 237 158 40 chr1 66916010 66916162 -215277502 - MER5A DNA MER1_type -1 188 8 340 297 177 5 chr1 66916311 66916503 -215277161 + MIR SINE MIR 7 231 -31 442 346 94 4 chr1 66916523 66916757 -215276907 - MIR SINE MIR 0 262 8 201 233 17 33 chr1 66916875 66916935 -215276729 + MIR SINE MIR 58 116 -92 706 264 51 45 chr1 66917485 66917730 -215275934 + MIR SINE MIR 1 252 -10 207 361 14 0 chr1 66917798 66917870 -215275794 - L2 LINE L2 -14 3258 3186 292 310 76 53 chr1 66917975 66918146 -215275518 - MIR SINE MIR -12 250 76 327 278 52 35 chr1 66918246 66918361 -215275303 - MIR SINE MIR -73 189 73 287 284 0 42 chr1 66918813 66918908 -215274756 + MIR SINE MIR 63 153 -109 496 202 65 24 chr1 66918909 66919033 -215274631 + L2 LINE L2 3185 3313 0 335 300 70 62 chr1 66919168 66919411 -215274253 - L2 LINE L2 0 3272 3028 1528 268 56 23 chr1 66920254 66920810 -215272854 - L2 LINE L2 -383 2931 2358 1671 220 53 8 chr1 66920897 66921370 -215272294 + L1M4 LINE L1 2390 2883 -3263 30 0 0 0 chr1 66921370 66921400 -215272264 + AT_rich Low_complexity Low_complexity 1 30 0 6052 167 10 18 chr1 66921400 66921650 -215272014 - L1PA16 LINE L1 -9 6157 5907 2069 169 19 11 chr1 66921650 66922022 -215271642 - THE1C LTR MaLR 0 375 1 6052 167 10 18 chr1 66922022 66923827 -215269837 - L1PA16 LINE L1 -259 5907 4123 2313 254 92 41 chr1 66923840 66924647 -215269017 - L2 LINE L2 -962 2352 1505 686 263 36 10 chr1 66924708 66924902 -215268762 - MIR SINE MIR -1 261 63 325 237 113 10 chr1 66925308 66925405 -215268259 + MIR3 SINE MIR 61 167 -41 394 329 6 63 chr1 66925429 66925587 -215268077 - L2 LINE L2 -10 3262 3114 1906 99 4 4 chr1 66925871 66926133 -215267531 - AluSx SINE Alu -49 263 2 21 0 0 0 chr1 66926156 66926177 -215267487 + AT_rich Low_complexity Low_complexity 1 21 0 678 284 61 9 chr1 66926268 66926497 -215267167 - MIR SINE MIR -8 254 14 238 278 28 28 chr1 66926520 66926592 -215267072 - L2 LINE L2 -607 2707 2636 1929 139 3 0 chr1 66926632 66926933 -215266731 - AluSx SINE Alu -10 302 1 232 222 51 26 chr1 66926947 66927064 -215266600 - L1M4 LINE L1 -873 5273 5154 363 301 66 7 chr1 66927731 66927867 -215265797 + MIR SINE MIR 71 214 -48 188 139 0 28 chr1 66927969 66928005 -215265659 + L2 LINE L2 3267 3301 -12 4088 168 7 20 chr1 66928006 66928722 -215264942 + L1MB3 LINE L1 5428 6134 -49 279 306 187 21 chr1 66928884 66929122 -215264542 - L2 LINE L2 -302 3011 2741 467 241 129 9 chr1 66929710 66929826 -215263838 - L2 LINE L2 0 3272 3143 594 272 35 50 chr1 66929901 66930103 -215263561 - MIR SINE MIR -5 257 59 1131 253 84 54 chr1 66930564 66931006 -215262658 + LTR33 LTR ERVL 5 459 -62 500 254 45 142 chr1 66931079 66931347 -215262317 - MIR SINE MIR -1 261 20 21 0 0 0 chr1 66931701 66931722 -215261942 + AT_rich Low_complexity Low_complexity 1 21 0 457 273 126 22 chr1 66932183 66932366 -215261298 - MIR SINE MIR -29 233 32 181 214 71 0 chr1 66932389 66932431 -215261233 - MIR SINE MIR -60 148 104 337 222 86 0 chr1 66932843 66932924 -215260740 + MIR SINE MIR 44 131 -131 210 293 61 40 chr1 66933161 66933260 -215260404 - MIR3 SINE MIR -11 197 97 2172 99 3 0 chr1 66933764 66934058 -215259606 - AluSp SINE Alu -16 297 3 388 231 143 71 chr1 66934317 66934499 -215259165 + MIR SINE MIR 20 214 -48 1522 189 35 51 chr1 66935037 66935582 -215258082 + MLT1D LTR MaLR 1 500 -5 452 270 0 0 chr1 66935684 66935784 -215257880 + MIR SINE MIR 46 145 -63 563 197 109 38 chr1 66936255 66936438 -215257226 + MIR SINE MIR 64 259 -3 496 286 82 53 chr1 66936565 66936810 -215256854 + MIR SINE MIR 1 252 -10 502 355 86 20 chr1 66938309 66938796 -215254868 + L2 LINE L2 2303 2821 -493 369 269 97 34 chr1 66938851 66938934 -215254730 + L2 LINE L2 2897 2973 -299 216 0 0 0 chr1 66938934 66938958 -215254706 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 369 269 97 34 chr1 66938958 66939049 -215254615 + L2 LINE L2 2973 3082 -190 186 211 39 39 chr1 66939741 66939793 -215253871 - L2 LINE L2 0 3313 3262 256 300 0 0 chr1 66939969 66940029 -215253635 + L2 LINE L2 3252 3311 -2 348 24 0 0 chr1 66940257 66940298 -215253366 + (TC)n Simple_repeat Simple_repeat 1 41 0 1071 121 0 0 chr1 66940328 66940512 -215253152 + AluSg/x SINE Alu 137 320 0 221 258 72 41 chr1 66940580 66940677 -215252987 + L2 LINE L2 3168 3267 -5 244 316 105 0 chr1 66941076 66941190 -215252474 + MIR3 SINE MIR 60 185 -23 1520 212 56 39 chr1 66941773 66942216 -215251448 + MLT1D LTR MaLR 33 504 -1 197 367 51 25 chr1 66942218 66942376 -215251288 - L2 LINE L2 -79 3193 3032 185 333 105 25 chr1 66942576 66942738 -215250926 - L2 LINE L2 -385 2929 2755 512 324 88 9 chr1 66942969 66943185 -215250479 + MIR SINE MIR 13 245 -17 1172 274 43 14 chr1 66943269 66943726 -215249938 + LTR33 LTR ERVL 21 521 0 192 307 173 0 chr1 66944370 66944445 -215249219 + L2 LINE L2 3142 3229 -43 1740 184 0 13 chr1 66944553 66944863 -215248801 - AluJo SINE Alu -6 306 1 1505 161 34 28 chr1 66945372 66945663 -215248001 + AluJb SINE Alu 1 293 -19 687 297 25 83 chr1 66945690 66946050 -215247614 - L2 LINE L2 -2 3311 2973 23118 53 1 2 chr1 66947192 66950010 -215243654 - L1P LINE L1 -3332 2814 1 269 283 113 91 chr1 66950178 66950507 -215243157 + L2 LINE L2 2937 3272 0 715 208 13 113 chr1 66950666 66950897 -215242767 - MIR SINE MIR -38 224 17 460 243 71 7 chr1 66950917 66951057 -215242607 - MIR SINE MIR -11 251 103 346 353 59 0 chr1 66951386 66951522 -215242142 + MIR SINE MIR 70 213 -49 3210 134 26 20 chr1 66951525 66952023 -215241641 - MER1A DNA MER1_type 0 529 29 317 213 16 0 chr1 66952383 66952444 -215241220 + L2 LINE L2 3249 3310 -3 643 214 24 0 chr1 66952738 66952864 -215240800 - L2 LINE L2 -1 3312 3184 236 259 17 0 chr1 66953103 66953161 -215240503 + GA-rich Low_complexity Low_complexity 1 59 0 317 297 123 0 chr1 66953522 66953677 -215239987 - MIR SINE MIR -70 192 19 334 215 15 0 chr1 66953703 66953768 -215239896 - MER20 DNA MER1_type 0 219 154 2709 88 6 0 chr1 66953768 66954121 -215239543 - THE1A LTR MaLR 0 355 1 11661 108 5 0 chr1 66954121 66955693 -215237971 - THE1A-int LTR MaLR 0 1580 1 1630 80 5 5 chr1 66955693 66955906 -215237758 - THE1A LTR MaLR 0 355 143 897 168 0 0 chr1 66955906 66956049 -215237615 - THE1-int LTR MaLR -1020 560 418 1130 73 0 0 chr1 66956060 66956197 -215237467 - THE1A LTR MaLR -218 137 1 634 216 64 0 chr1 66956198 66956323 -215237341 - MER20 DNA MER1_type -62 157 25 304 227 67 0 chr1 66956353 66956428 -215237236 + MIR3 SINE MIR 91 170 -38 226 250 98 45 chr1 66956562 66956578 -215237086 + Charlie7 DNA MER1_type 2472 2486 -126 1524 183 32 3 chr1 66956578 66956863 -215236801 - AluJb SINE Alu -19 293 1 226 250 98 45 chr1 66956863 66956978 -215236686 + Charlie7 DNA MER1_type 2486 2610 -2 284 327 10 0 chr1 66957071 66957172 -215236492 + MIR SINE MIR 102 203 -59 879 87 0 0 chr1 66957361 66957476 -215236188 + AluSc SINE Alu 1 115 -194 25384 29 0 1 chr1 66957476 66961262 -215232402 + L1PA5 LINE L1 2364 6154 0 452 351 61 55 chr1 66961660 66962145 -215231519 - L2 LINE L2 -20 3252 2766 608 297 102 0 chr1 66962177 66962413 -215231251 + MIR SINE MIR 1 260 -2 946 310 36 45 chr1 66962858 66963351 -215230313 + LTR33 LTR ERVL 32 520 -1 264 371 18 41 chr1 66963548 66963769 -215229895 - L2 LINE L2 -510 2804 2589 277 204 229 0 chr1 66964160 66964280 -215229384 - MIR SINE MIR -63 145 43 253 270 0 16 chr1 66964527 66964590 -215229074 + L2 LINE L2 3014 3075 -197 262 204 23 0 chr1 66964705 66964793 -215228871 - L1MC4 LINE L1 -1339 6703 6614 423 340 49 15 chr1 66964845 66965048 -215228616 + L3 LINE CR1 1227 1436 -141 442 269 148 0 chr1 66965165 66965314 -215228350 - MIR SINE MIR 0 262 92 195 42 0 0 chr1 66965781 66965805 -215227859 + (A)n Simple_repeat Simple_repeat 1 24 0 256 271 0 0 chr1 66966118 66966177 -215227487 - L2 LINE L2 -10 3262 3204 3205 79 14 9 chr1 66966236 66966667 -215226997 + L1PA10 LINE L1 5734 6166 -2 298 208 52 13 chr1 66967148 66967225 -215226439 - MIR SINE MIR -84 124 45 28 61 0 0 chr1 66967449 66967498 -215226166 + AT_rich Low_complexity Low_complexity 1 49 0 299 141 81 111 chr1 66967677 66967776 -215225888 - MLT1H LTR MaLR 0 549 454 1386 188 20 24 chr1 66968833 66969125 -215224539 + AluJo SINE Alu 3 293 -19 279 281 124 41 chr1 66970042 66970163 -215223501 - L2 LINE L2 -2 3270 3140 204 317 0 0 chr1 66970416 66970476 -215223188 + L2 LINE L2 3254 3313 0 * 437 337 54 56 chr1 66970472 66970709 -215222955 + MIR SINE MIR 7 260 -2 448 353 47 40 chr1 66970718 66970993 -215222671 - L2 LINE L2 -6 3266 2990 203 308 0 66 chr1 66971159 66971250 -215222414 - MIR SINE MIR -71 191 107 423 260 85 124 chr1 66971337 66971725 -215221939 + L2 LINE L2 2900 3272 0 214 328 129 0 chr1 66971798 66971914 -215221750 - L2 LINE L2 -40 3232 3102 194 305 17 0 chr1 66972331 66972390 -215221274 - L3 LINE CR1 -1099 478 419 348 64 0 0 chr1 66972392 66972439 -215221225 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 296 272 88 14 chr1 66972549 66972696 -215220968 - L1ME4a LINE L1 -4 6117 5960 463 284 67 39 chr1 66972755 66972963 -215220701 - L1ME4a LINE L1 -151 5970 5757 396 222 114 52 chr1 66973566 66973745 -215219919 + MIR3 SINE MIR 8 198 -64 272 311 159 19 chr1 66973789 66974104 -215219560 - L2 LINE L2 -58 3255 2897 307 302 124 70 chr1 66974116 66974194 -215219470 - L2 LINE L2 -33 3280 3208 2377 74 0 0 chr1 66974194 66974505 -215219159 + AluY SINE Alu 1 311 0 307 302 124 70 chr1 66974505 66974684 -215218980 - L2 LINE L2 -105 3208 3009 978 176 27 32 chr1 66974919 66975014 -215218650 - MER5A DNA MER1_type -2 187 92 2015 135 58 25 chr1 66975014 66975377 -215218287 - THE1C LTR MaLR 0 375 1 978 176 27 32 chr1 66975377 66975469 -215218195 - MER5A DNA MER1_type -97 92 1 1454 178 181 3 chr1 66975743 66976052 -215217612 + MLT1A1 LTR MaLR 1 364 -1 369 263 71 25 chr1 66976642 66976840 -215216824 + L2 LINE L2 2597 2803 -511 305 232 10 81 chr1 66977180 66977279 -215216385 + L2 LINE L2 2956 3047 -225 189 240 256 8 chr1 66977387 66977516 -215216148 + L2 LINE L2 3153 3313 0 2016 169 19 35 chr1 66977935 66978303 -215215361 - MLT1A1 LTR MaLR 0 365 4 286 247 37 0 chr1 66978363 66978444 -215215220 - MER96 DNA MER1_type? -1 174 91 258 340 20 10 chr1 66978456 66978556 -215215108 + MIR3 SINE MIR 54 154 -54 227 186 29 14 chr1 66979296 66979366 -215214298 + (TA)n Simple_repeat Simple_repeat 2 72 0 266 308 22 0 chr1 66979383 66979474 -215214190 - L3 LINE CR1 -279 1298 1206 1846 99 0 12 chr1 66979488 66979731 -215213933 + AluSg SINE Alu 62 301 -9 1938 139 4 0 chr1 66979751 66980024 -215213640 + AluSx SINE Alu 1 274 -38 329 317 194 17 chr1 66980869 66981162 -215212502 + L2 LINE L2 2928 3272 0 426 248 28 0 chr1 66981552 66981661 -215212003 - MIR SINE MIR -93 169 58 801 290 63 24 chr1 66981828 66982211 -215211453 + L2 LINE L2 2855 3252 -61 442 253 123 0 chr1 66983337 66983483 -215210181 - MIR SINE MIR -36 226 63 192 274 48 48 chr1 66983683 66983767 -215209897 - MIR SINE MIR -107 101 18 2232 132 16 50 chr1 66984223 66984601 -215209063 - MLT1A1 LTR MaLR 0 365 1 221 239 130 11 chr1 66984697 66984789 -215208875 + MIR SINE MIR 146 248 -14 345 62 0 0 chr1 66984794 66984842 -215208822 + (TG)n Simple_repeat Simple_repeat 2 49 0 218 243 81 36 chr1 66984868 66984979 -215208685 - MIR SINE MIR -70 138 23 328 265 87 56 chr1 66985643 66985839 -215207825 + L2 LINE L2 2992 3193 -120 815 266 19 5 chr1 66985859 66986073 -215207591 - MIR SINE MIR -44 218 2 521 276 22 0 chr1 66986073 66986197 -215207467 + L2 LINE L2 3187 3313 0 304 260 16 107 chr1 66986310 66986541 -215207123 + MIR SINE MIR 5 222 -40 313 312 186 25 chr1 66987318 66987597 -215206067 + L2 LINE L2 2934 3257 -15 217 269 201 22 chr1 66987699 66987833 -215205831 - MIR3 SINE MIR -27 181 24 269 310 30 0 chr1 66988882 66988982 -215204682 - MIR SINE MIR -43 219 117 886 261 60 0 chr1 66989278 66989496 -215204168 + MER69 DNA AcHobo 17 247 -979 292 125 143 0 chr1 66989491 66989547 -215204117 + MER69 DNA AcHobo 2435 2498 -28 * 271 167 0 0 chr1 66989609 66989651 -215204013 + AluSx SINE Alu 2 43 -259 1846 147 0 0 chr1 66989679 66990130 -215203534 + AluSx SINE Alu 40 312 0 1740 115 25 0 chr1 66990915 66991159 -215202505 - L1PA10 LINE L1 -12 6156 5907 250 289 12 0 chr1 66991429 66991512 -215202152 - L2 LINE L2 -226 3046 2963 858 249 108 9 chr1 66991857 66992199 -215201465 + L1ME4a LINE L1 5551 5926 -195 800 232 72 21 chr1 66992216 66992453 -215201211 - MIR SINE MIR -11 251 3 367 338 98 21 chr1 66992701 66992988 -215200676 - L2 LINE L2 0 3313 3005 357 24 0 0 chr1 66993000 66993042 -215200622 + (CA)n Simple_repeat Simple_repeat 2 43 0 472 232 18 0 chr1 66993054 66993166 -215200498 + L1MC4 LINE L1 7929 8042 0 2023 60 94 0 chr1 66993426 66993691 -215199973 - AluY SINE Alu -21 290 1 306 314 9 0 chr1 66993731 66993836 -215199828 - MIR SINE MIR -67 141 36 33 0 0 0 chr1 66994115 66994148 -215199516 + AT_rich Low_complexity Low_complexity 1 33 0 214 250 16 16 chr1 66995328 66995392 -215198272 - MIR SINE MIR -90 172 109 2212 154 63 0 chr1 66995658 66996021 -215197643 + MLT1B LTR MaLR 5 390 0 351 261 65 0 chr1 66996047 66996139 -215197525 - LTR33 LTR ERVL -319 202 105 362 256 60 51 chr1 66996193 66996310 -215197354 - L2 LINE L2 -1 3271 3154 259 219 140 61 chr1 66996717 66996831 -215196833 + MIR SINE MIR 13 135 -127 393 254 25 41 chr1 66997556 66997678 -215195986 + MER94 DNA DNA 2 121 -13 341 351 107 13 chr1 66997793 66998101 -215195563 + L2 LINE L2 2914 3250 -22 268 298 185 6 chr1 66998259 66998437 -215195227 - MARNA DNA Mariner -102 484 275 199 224 0 20 chr1 66998441 66998490 -215195174 + L2 LINE L2 3220 3267 -5 308 343 40 34 chr1 66998632 66998807 -215194857 - MIR SINE MIR -6 256 81 385 254 18 26 chr1 66998912 66999026 -215194638 - MARNA DNA Mariner -471 115 3 1426 301 81 57 chr1 66999131 67000311 -215193353 - HERV16 LTR ERVL -3788 1208 1 556 279 141 52 chr1 67000311 67000731 -215192933 - LTR16A1 LTR ERVL 0 457 1 281 89 22 0 chr1 67000732 67000777 -215192887 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 248 369 0 54 chr1 67000890 67001020 -215192644 - MIR3 SINE MIR -28 180 58 923 269 75 32 chr1 67001045 67001488 -215192176 - MLT1J LTR MaLR -49 462 1 222 306 153 9 chr1 67001570 67001681 -215191983 + MIR SINE MIR 97 223 -39 475 323 68 48 chr1 67002143 67002480 -215191184 - L2 LINE L2 -38 3234 2891 440 246 16 16 chr1 67002957 67003079 -215190585 - MIR SINE MIR -61 147 26 2392 61 0 42 chr1 67003100 67003410 -215190254 + AluY SINE Alu 1 297 -14 207 274 24 36 chr1 67003706 67003790 -215189874 - MIR SINE MIR -55 153 71 530 293 0 0 chr1 67004093 67004233 -215189431 - MIR3 SINE MIR -29 179 40 473 278 84 21 chr1 67004257 67004448 -215189216 + MIR SINE MIR 33 235 -27 218 318 114 50 chr1 67004583 67005020 -215188644 - L2 LINE L2 -396 2918 2454 718 278 92 43 chr1 67005162 67005532 -215188132 + L1ME LINE L1 5292 5676 -494 205 363 0 0 chr1 67006229 67006309 -215187355 - MIR SINE MIR -119 143 64 340 281 0 0 chr1 67006748 67006830 -215186834 - L2 LINE L2 -1 3312 3231 327 212 15 0 chr1 67006831 67006897 -215186767 - L2 LINE L2 -4 3268 3202 745 167 70 121 chr1 67007037 67007294 -215186370 + MER33 DNA MER1_type 1 244 -80 284 274 39 10 chr1 67007316 67007418 -215186246 - MIR SINE MIR -85 177 73 886 164 6 51 chr1 67007718 67007895 -215185769 - FRAM SINE Alu -4 172 4 1062 220 89 52 chr1 67007899 67008190 -215185474 + MLT1J LTR MaLR 59 360 -151 10605 100 36 5 chr1 67008459 67009962 -215183702 + Tigger1 DNA MER2_type 1 1550 -868 411 327 45 9 chr1 67010223 67010446 -215183218 + L2 LINE L2 2730 2960 -354 497 260 32 0 chr1 67010984 67011107 -215182557 - MER94 DNA DNA -7 127 1 2184 123 10 3 chr1 67011648 67011950 -215181714 - AluSx SINE Alu -8 304 1 189 336 73 36 chr1 67012248 67012358 -215181306 - MIR SINE MIR -133 129 16 467 296 56 0 chr1 67012550 67012729 -215180935 + MIR SINE MIR 73 261 -1 240 255 75 43 chr1 67013405 67013499 -215180165 + MIR SINE MIR 23 119 -143 322 169 31 0 chr1 67013683 67013748 -215179916 - L2 LINE L2 -4 3268 3202 732 255 0 6 chr1 67013826 67014025 -215179639 - MIR SINE MIR 0 262 66 1758 169 0 43 chr1 67014347 67014672 -215178992 - AluJo SINE Alu -1 311 1 264 59 0 0 chr1 67015097 67015131 -215178533 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 293 261 108 27 chr1 67015310 67015421 -215178243 + MIR SINE MIR 20 139 -69 343 313 86 0 chr1 67015904 67016067 -215177597 + MIR SINE MIR 80 256 -6 536 338 5 14 chr1 67016093 67016200 -215177464 - MIR SINE MIR 0 262 156 2735 137 5 34 chr1 67016200 67016647 -215177017 + Tigger2a DNA MER2_type 1 434 0 536 338 5 14 chr1 67016647 67016755 -215176909 - MIR SINE MIR -106 156 49 1813 243 72 7 chr1 67017202 67017647 -215176017 + L1ME1 LINE L1 36 509 -5887 379 214 11 0 chr1 67017655 67017744 -215175920 + L1ME1 LINE L1 2941 3030 -3185 3249 222 55 34 chr1 67017844 67018796 -215174868 + L1ME1 LINE L1 5271 6230 -5 498 293 77 90 chr1 67019003 67019782 -215173882 + L1M4 LINE L1 2261 3029 -3117 1683 138 12 94 chr1 67019836 67020176 -215173488 + AluSx SINE Alu 1 312 0 21 82 0 0 chr1 67020184 67020233 -215173431 + AT_rich Low_complexity Low_complexity 1 49 0 2323 87 0 7 chr1 67020330 67020630 -215173034 + AluSc SINE Alu 1 298 -11 420 211 20 109 chr1 67021708 67021855 -215171809 + MIR SINE MIR 34 167 -95 905 101 7 14 chr1 67021855 67021994 -215171670 + L1PA4 LINE L1 6015 6152 -3 364 321 75 0 chr1 67022064 67022224 -215171440 - MIR SINE MIR -52 210 41 186 273 55 0 chr1 67022251 67022306 -215171358 + L2 LINE L2 3198 3255 -17 402 293 8 8 chr1 67022310 67022433 -215171231 + L2 LINE L2 3191 3313 0 319 206 23 46 chr1 67022463 67022573 -215171091 + MIR SINE MIR 32 138 -70 249 299 45 52 chr1 67023037 67023171 -215170493 - MIR3 SINE MIR -61 147 15 387 204 43 11 chr1 67023305 67023398 -215170266 - MIR SINE MIR -90 172 77 469 280 30 35 chr1 67023506 67023706 -215169958 + MIR SINE MIR 58 256 -6 199 258 61 0 chr1 67024103 67024169 -215169495 + MIR SINE MIR 81 150 -58 189 321 50 14 chr1 67024398 67024538 -215169126 + L2 LINE L2 2040 2184 -1130 330 296 46 0 chr1 67024678 67024786 -215168878 - L2 LINE L2 -3 3310 3198 3564 131 10 39 chr1 67025111 67025723 -215167941 + Tigger1 DNA MER2_type 1825 2418 0 329 290 159 48 chr1 67026018 67026163 -215167501 - L1MC4a LINE L1 -1835 5973 5813 315 188 62 0 chr1 67026169 67026233 -215167431 + MIR SINE MIR 87 154 -108 410 319 12 12 chr1 67026546 67026706 -215166958 + MIR SINE MIR 92 251 -11 242 325 110 31 chr1 67026726 67026889 -215166775 - L2 LINE L2 -206 3066 2891 299 298 85 43 chr1 67027692 67027833 -215165831 - L2 LINE L2 0 3313 3167 268 247 37 39 chr1 67027872 67027975 -215165689 - MIR3 SINE MIR -51 157 93 275 296 92 0 chr1 67028052 67028150 -215165514 + L2 LINE L2 3173 3279 -34 332 314 75 38 chr1 67028185 67028344 -215165320 - MIR SINE MIR -15 247 83 441 296 92 19 chr1 67028648 67028854 -215164810 - MIR SINE MIR -30 232 12 683 334 52 25 chr1 67029246 67029653 -215164011 + L3 LINE CR1 940 1357 -220 293 225 34 0 chr1 67029771 67029849 -215163815 + MIR SINE MIR 81 162 -46 395 199 7 58 chr1 67029908 67030055 -215163609 + MIR SINE MIR 58 244 -18 349 240 39 39 chr1 67030432 67030536 -215163128 - MIR SINE MIR -127 135 32 549 191 78 26 chr1 67030829 67030944 -215162720 + MER3 DNA MER1_type 1 121 -88 314 304 82 15 chr1 67030944 67031079 -215162585 - MIR SINE MIR -107 155 12 450 315 7 7 chr1 67031387 67031530 -215162134 + MIR3 SINE MIR 48 190 -18 194 154 115 58 chr1 67032264 67032316 -215161348 + L2 LINE L2 3255 3309 -4 300 280 68 17 chr1 67032377 67032495 -215161169 - MIR SINE MIR -131 131 8 209 194 125 83 chr1 67032704 67032776 -215160888 + L2 LINE L2 3235 3309 -4 238 253 93 0 chr1 67032820 67032895 -215160769 + L2 LINE L2 3232 3313 0 301 242 0 0 chr1 67033126 67033192 -215160472 - MLT1K LTR MaLR -9 579 514 656 279 42 0 chr1 67033544 67033709 -215159955 - MER91A DNA MER1_type -24 172 1 327 326 161 22 chr1 67033932 67034162 -215159502 + L2 LINE L2 2371 2632 -682 2779 10 0 0 chr1 67034220 67034531 -215159133 - AluYa5 SINE Alu 0 311 1 438 241 143 89 chr1 67034536 67034739 -215158925 + MLT1H LTR MaLR 57 270 -279 314 253 11 11 chr1 67034826 67034917 -215158747 + MLT1G LTR MaLR 495 585 -5 253 342 86 53 chr1 67034918 67035257 -215158407 + L2 LINE L2 2628 2977 -337 595 317 59 5 chr1 67035512 67035714 -215157950 + MIR SINE MIR 10 222 -40 322 265 129 38 chr1 67035855 67035987 -215157677 + MIR3 SINE MIR 2 145 -63 262 274 137 0 chr1 67036221 67036345 -215157319 - L2 LINE L2 -52 3261 3121 236 353 65 14 chr1 67036387 67036526 -215157138 + L2 LINE L2 3144 3289 -24 768 301 43 53 chr1 67037243 67037619 -215156045 - L2 LINE L2 -21 3292 2921 212 270 117 58 chr1 67037735 67037872 -215155792 - L2 LINE L2 0 3313 3169 1496 228 60 16 chr1 67037932 67038367 -215155297 - Charlie4a DNA MER1_type -32 476 23 419 342 97 37 chr1 67038418 67038982 -215154682 - L2 LINE L2 -213 3059 2462 204 313 36 0 chr1 67039657 67039740 -215153924 - MIR SINE MIR -69 139 54 1988 138 0 0 chr1 67040118 67040415 -215153249 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr1 67040424 67040459 -215153205 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2149 81 14 3 chr1 67040534 67040829 -215152835 + AluSq SINE Alu 16 313 0 217 296 0 45 chr1 67041735 67041867 -215151797 + GA-rich Low_complexity Low_complexity 2 127 0 * 225 212 0 31 chr1 67041822 67041906 -215151758 + A-rich Low_complexity Low_complexity 1 81 0 1854 239 8 54 chr1 67042037 67042540 -215151124 - MLT2B1 LTR ERVL -39 481 2 340 333 125 31 chr1 67042921 67043209 -215150455 + L1ME LINE L1 509 823 -5573 761 210 58 133 chr1 67043243 67043382 -215150282 + L1ME LINE L1 774 922 -5484 1532 203 7 7 chr1 67043382 67043678 -215149986 - AluJb SINE Alu -16 296 1 761 210 58 133 chr1 67043678 67044137 -215149527 + L1ME LINE L1 922 1247 -5159 792 259 38 0 chr1 67044137 67044349 -215149315 - MER58A DNA MER1_type -4 220 1 761 210 58 133 chr1 67044349 67044556 -215149108 + L1ME LINE L1 1247 1468 -4938 1553 216 111 11 chr1 67045595 67046054 -215147610 + L1ME LINE L1 1450 1954 -4452 1501 261 110 5 chr1 67046034 67046606 -215147058 + L1ME LINE L1 3513 4144 -2262 * 804 253 50 14 chr1 67096626 67096847 -215096817 - LTR8 LTR ERV1 -462 229 1 457 314 43 11 chr1 67097483 67097671 -215095993 - MIR SINE MIR -66 196 3 434 206 28 19 chr1 67097824 67097931 -215095733 + MIR SINE MIR 155 262 0 * 498 266 90 17 chr1 67097924 67098101 -215095563 - MIR SINE MIR -41 221 32 564 264 60 60 chr1 67098698 67098933 -215094731 + MIR SINE MIR 26 260 -2 251 274 0 0 chr1 67098981 67099032 -215094632 + L2 LINE L2 3210 3260 -12 241 324 79 46 chr1 67100012 67100228 -215093436 - L2 LINE L2 -1084 2230 2008 * 444 346 34 21 chr1 67100223 67100457 -215093207 + MIR SINE MIR 19 255 -7 565 196 9 0 chr1 67100575 67100682 -215092982 + L1PA16 LINE L1 6059 6166 0 2446 89 0 0 chr1 67100685 67100988 -215092676 + AluY SINE Alu 1 303 -8 497 243 133 57 chr1 67101189 67101452 -215092212 - L1ME4a LINE L1 -8 6113 5831 181 371 21 36 chr1 67101471 67101611 -215092053 - L2 LINE L2 -1362 1952 1815 2135 170 134 44 chr1 67101870 67102347 -215091317 + MLT2B1 LTR ERVL 1 520 0 243 310 155 30 chr1 67102387 67102690 -215090974 - L2 LINE L2 -160 3153 2813 1335 315 147 51 chr1 67102976 67103845 -215089819 - L1MC4 LINE L1 0 8042 7090 285 327 0 20 chr1 67103974 67104075 -215089589 - MLT1K LTR MaLR -486 102 4 855 270 35 67 chr1 67104185 67104500 -215089164 - MLT1J LTR MaLR -151 360 56 269 233 33 0 chr1 67104535 67104595 -215089069 - MLT1J LTR MaLR -446 65 4 330 302 31 23 chr1 67104972 67105101 -215088563 + MIR3 SINE MIR 2 131 -77 323 342 0 0 chr1 67105324 67105400 -215088264 + L2 LINE L2 3159 3234 -38 271 297 27 27 chr1 67105546 67105657 -215088007 - MIR SINE MIR -51 211 101 505 259 60 77 chr1 67105657 67105908 -215087756 + L1MC/D LINE L1 4412 4666 -1480 2347 70 0 3 chr1 67105908 67106214 -215087450 + AluY SINE Alu 1 305 0 505 259 60 77 chr1 67106214 67106955 -215086709 + L1MC/D LINE L1 4666 5310 -836 1614 217 112 69 chr1 67106955 67107475 -215086189 + MLT1F LTR MaLR 1 542 0 505 259 60 77 chr1 67107475 67107539 -215086125 + L1MC/D LINE L1 5310 5374 -772 574 187 73 0 chr1 67107543 67107666 -215085998 + L1MC4a LINE L1 5618 5749 -2059 1054 255 160 21 chr1 67107704 67108123 -215085541 - MLT1H LTR MaLR 0 549 73 847 212 69 26 chr1 67108164 67108534 -215085130 + L1MC4a LINE L1 5801 6231 -1577 703 235 55 32 chr1 67108567 67108784 -215084880 + L1MC4 LINE L1 7688 7909 -133 441 0 0 0 chr1 67109230 67109279 -215084385 + (TTA)n Simple_repeat Simple_repeat 3 51 0 13769 74 7 12 chr1 67109282 67110080 -215083584 - L1PA7 LINE L1 -21 6133 5332 2302 97 0 3 chr1 67110080 67110379 -215083285 + AluY SINE Alu 5 302 -9 13769 74 7 12 chr1 67110379 67112190 -215081474 - L1PA7 LINE L1 -822 5332 3522 5445 104 4 15 chr1 67112179 67113076 -215080588 - L1P3 LINE L1 -4596 1865 981 * 2832 50 0 15 chr1 67113211 67113550 -215080114 + L1PA7 LINE L1 5816 6149 -5 439 216 11 0 chr1 67113565 67113665 -215079999 + L1MC4 LINE L1 7897 7995 0 211 182 0 0 chr1 67114366 67114399 -215079265 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 2111 135 0 3 chr1 67114423 67114720 -215078944 + AluSx SINE Alu 1 296 -16 307 234 185 45 chr1 67114744 67114966 -215078698 - L2 LINE L2 -44 3228 2976 432 229 169 66 chr1 67115006 67115172 -215078492 + MER5A DNA MER1_type 7 189 0 233 185 19 37 chr1 67115420 67115474 -215078190 + L1P4 LINE L1 5612 5664 -502 233 257 53 80 chr1 67115672 67115785 -215077879 + MIR SINE MIR 31 140 -68 806 291 46 4 chr1 67115986 67116227 -215077437 - MIR SINE MIR 0 262 12 331 223 58 165 chr1 67116248 67116367 -215077297 + MER5A DNA MER1_type 18 112 -77 1623 157 3 38 chr1 67116367 67116723 -215076941 - AluJo SINE Alu 0 346 1 331 223 58 165 chr1 67116723 67116790 -215076874 + MER5A DNA MER1_type 112 185 -4 319 309 81 20 chr1 67116839 67116988 -215076676 - MIR SINE MIR -101 161 4 278 257 133 9 chr1 67117498 67117603 -215076061 - MIR SINE MIR -86 122 4 833 223 104 15 chr1 67117995 67118197 -215075467 - MIR SINE MIR -33 229 10 271 258 16 0 chr1 67118517 67118579 -215075085 + MIR3 SINE MIR 143 205 -3 1253 242 104 12 chr1 67118875 67119210 -215074454 + MLT1J LTR MaLR 146 511 0 283 200 32 32 chr1 67119303 67119428 -215074236 + GA-rich Low_complexity Low_complexity 1 125 0 285 316 104 53 chr1 67119504 67119937 -215073727 + L2 LINE L2 2560 3038 -234 409 245 41 0 chr1 67120556 67120654 -215073010 + MIR SINE MIR 91 192 -70 245 328 70 51 chr1 67121091 67121347 -215072317 + L3 LINE CR1 1019 1279 -298 244 311 14 27 chr1 67121548 67121622 -215072042 - Charlie8 DNA MER1_type -2344 73 1 571 228 24 8 chr1 67121790 67121917 -215071747 + MIR SINE MIR 9 137 -125 561 275 137 17 chr1 67121922 67122155 -215071509 - MIR SINE MIR 0 262 2 202 341 32 40 chr1 67122164 67122290 -215071374 + MIR SINE MIR 137 261 -1 474 33 0 0 chr1 67122932 67122992 -215070672 + (CA)n Simple_repeat Simple_repeat 2 61 0 286 272 37 0 chr1 67123103 67123184 -215070480 + MIR SINE MIR 45 128 -134 217 320 50 60 chr1 67123459 67123559 -215070105 - L2 LINE L2 -25 3247 3149 513 234 123 47 chr1 67123559 67123730 -215069934 + MER5A DNA MER1_type 1 184 -5 422 276 9 0 chr1 67123792 67123897 -215069767 - MIR SINE MIR -6 256 151 661 266 23 77 chr1 67124453 67124803 -215068861 + L1ME LINE L1 5468 5798 -323 644 195 0 8 chr1 67124811 67124929 -215068735 + L2 LINE L2 3193 3309 -4 287 227 133 47 chr1 67125003 67125131 -215068533 + MIR SINE MIR 118 256 -6 195 330 28 9 chr1 67126074 67126180 -215067484 + L3 LINE CR1 824 931 -646 295 311 10 10 chr1 67126254 67126357 -215067307 - MER5A DNA MER1_type -43 146 44 2899 216 97 46 chr1 67127001 67128130 -215065534 - L1ME2 LINE L1 -11 6222 5032 4764 258 83 36 chr1 67128141 67129047 -215064617 - L1ME2 LINE L1 -2062 4153 3291 1795 145 6 55 chr1 67129047 67129358 -215064306 - AluJb SINE Alu -16 296 1 4764 258 83 36 chr1 67129358 67130543 -215063121 - L1ME2 LINE L1 -2924 3291 2164 1092 203 35 69 chr1 67130543 67130775 -215062889 + MER58A DNA MER1_type 1 224 0 4764 258 83 36 chr1 67130775 67132622 -215061042 - L1ME2 LINE L1 -4051 2164 22 336 275 0 78 chr1 67132645 67132787 -215060877 + L3 LINE CR1 929 1059 -518 442 350 69 67 chr1 67132797 67133651 -215060013 - L2 LINE L2 0 3272 2410 401 247 62 10 chr1 67134319 67134416 -215059248 + MLT1J LTR MaLR 1 102 -409 625 332 62 36 chr1 67134582 67134940 -215058724 - LTR33 LTR ERVL -154 367 1 1133 229 119 10 chr1 67134955 67135257 -215058407 + MLT1J LTR MaLR 170 504 -7 332 342 120 60 chr1 67135975 67136326 -215057338 - L2 LINE L2 -8 3264 2893 2324 161 16 0 chr1 67136440 67136818 -215056846 + L1PB4 LINE L1 5766 6149 -7 234 136 45 0 chr1 67136855 67136899 -215056765 - MIR SINE MIR -33 229 184 206 226 81 0 chr1 67137252 67137314 -215056350 - MIR SINE MIR -12 250 184 455 234 108 105 chr1 67137670 67137956 -215055708 - MLT1J LTR MaLR -210 301 15 445 291 68 0 chr1 67137959 67138107 -215055557 - MIR SINE MIR -59 203 46 318 256 112 0 chr1 67138158 67138283 -215055381 + MIR SINE MIR 78 216 -46 2012 154 15 80 chr1 67139031 67139421 -215054243 + MLT1A1 LTR MaLR 1 365 0 280 308 101 31 chr1 67139643 67139870 -215053794 - L1MC/D LINE L1 -1948 5860 5618 315 324 69 6 chr1 67139880 67140053 -215053611 - L1P4 LINE L1 -613 5555 5372 216 282 204 10 chr1 67140614 67140717 -215052947 - L2 LINE L2 -5 3308 3186 1954 196 28 8 chr1 67140806 67141164 -215052500 + MLT1A1 LTR MaLR 1 365 0 466 272 76 6 chr1 67141168 67141326 -215052338 + MIR SINE MIR 92 260 -2 189 0 0 0 chr1 67141352 67141373 -215052291 + (TTA)n Simple_repeat Simple_repeat 3 23 0 319 274 24 12 chr1 67141548 67141632 -215052032 - MIR SINE MIR -125 137 53 238 304 80 36 chr1 67142452 67142564 -215051100 - MIR SINE MIR -62 146 30 212 374 71 19 chr1 67142708 67142863 -215050801 + L2 LINE L2 2810 2972 -300 279 157 0 0 chr1 67142864 67142915 -215050749 + GA-rich Low_complexity Low_complexity 1 51 0 271 291 0 23 chr1 67143515 67143601 -215050063 - L2 LINE L2 -1 3312 3229 217 318 176 0 chr1 67143640 67143725 -215049939 + MIR SINE MIR 43 142 -66 318 232 14 155 chr1 67143752 67143894 -215049770 - L2 LINE L2 -30 3242 3121 685 254 49 57 chr1 67144003 67144247 -215049417 + MIR SINE MIR 20 261 -1 254 365 77 0 chr1 67144983 67145087 -215048577 + L2 LINE L2 3160 3271 -1 219 270 60 30 chr1 67145090 67145190 -215048474 + L3 LINE CR1 1100 1202 -375 263 152 22 0 chr1 67145242 67145288 -215048376 - MLT2F LTR ERVL 0 663 617 180 152 0 0 chr1 67145290 67145323 -215048341 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 23 54 0 0 chr1 67145356 67145393 -215048271 + AT_rich Low_complexity Low_complexity 1 37 0 622 187 0 0 chr1 67145517 67145624 -215048040 - MLT1E3 LTR MaLR -472 152 46 507 248 0 8 chr1 67145629 67145750 -215047914 - MLT2F LTR ERVL -523 140 21 226 313 89 18 chr1 67145813 67145925 -215047739 + L3 LINE CR1 1270 1389 -188 1249 213 211 47 chr1 67146522 67147030 -215046634 - MLT1G1 LTR MaLR 0 595 5 242 311 113 9 chr1 67147340 67147446 -215046218 + MER5A DNA MER1_type 22 138 -51 770 293 28 16 chr1 67148285 67148538 -215045126 - MIR SINE MIR 0 262 7 2331 109 0 0 chr1 67148568 67148870 -215044794 + AluSx SINE Alu 1 302 -10 230 264 127 80 chr1 67149585 67149768 -215043896 - L2 LINE L2 -39 3233 3060 2060 119 7 23 chr1 67149768 67150070 -215043594 + AluSx SINE Alu 2 298 -14 230 264 127 80 chr1 67150070 67150272 -215043392 - L2 LINE L2 -212 3060 2830 313 330 68 5 chr1 67150313 67150504 -215043160 - L2 LINE L2 -559 2755 2553 206 269 58 0 chr1 67150626 67150678 -215042986 - L3 LINE CR1 -24 1553 1499 208 316 11 42 chr1 67151367 67151417 -215042247 + MIR SINE MIR 108 155 -107 1482 158 130 50 chr1 67151417 67151739 -215041925 - MER7A DNA MER2_type 0 346 1 208 316 11 42 chr1 67151739 67151783 -215041881 + MIR SINE MIR 155 199 -63 180 243 0 0 chr1 67151887 67151924 -215041740 + MIR SINE MIR 220 256 -6 456 307 0 26 chr1 67152343 67152496 -215041168 + (TGGG)n Simple_repeat Simple_repeat 4 152 0 285 269 65 0 chr1 67152617 67152710 -215040954 - MER5A DNA MER1_type -79 110 12 355 328 84 45 chr1 67152986 67153226 -215040438 + MIR SINE MIR 5 250 -12 22 0 0 0 chr1 67153611 67153633 -215040031 + AT_rich Low_complexity Low_complexity 1 22 0 192 245 0 19 chr1 67154181 67154234 -215039430 - MER5A DNA MER1_type -82 107 56 1694 155 0 87 chr1 67154299 67154622 -215039042 - AluJb SINE Alu -15 297 3 219 69 0 0 chr1 67155248 67155277 -215038387 + (TTCC)n Simple_repeat Simple_repeat 2 30 0 183 255 0 20 chr1 67155754 67155805 -215037859 - MER5A DNA MER1_type 0 189 140 573 339 48 8 chr1 67156015 67156266 -215037398 + MIR SINE MIR 2 262 0 321 356 40 0 chr1 67156328 67156429 -215037235 - L2 LINE L2 -53 3219 3115 1013 275 31 22 chr1 67156436 67156756 -215036908 - LTR16A LTR ERVL 0 450 128 2051 150 3 3 chr1 67156818 67157124 -215036540 + AluSx SINE Alu 1 306 -6 267 31 0 0 chr1 67157133 67157165 -215036499 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 222 304 161 6 chr1 67157424 67157592 -215036072 + MIR SINE MIR 56 249 -13 225 364 20 0 chr1 67157638 67157737 -215035927 - MIR SINE MIR -58 150 50 200 107 0 0 chr1 67157850 67157878 -215035786 - MIR3 SINE MIR -28 180 153 2751 72 32 3 chr1 67158384 67158729 -215034935 - THE1A LTR MaLR 0 355 1 472 323 51 23 chr1 67159145 67159362 -215034302 + MIR SINE MIR 21 243 -19 755 56 0 0 chr1 67160056 67160145 -215033519 - THE1A LTR MaLR 0 355 267 250 295 0 0 chr1 67160664 67160725 -215032939 - L2 LINE L2 -9 3304 3244 732 280 96 4 chr1 67160760 67160999 -215032665 - MIR SINE MIR 0 262 2 295 362 29 0 chr1 67161504 67161609 -215032055 - MIR SINE MIR -63 145 38 267 334 78 46 chr1 67161809 67161988 -215031676 - MIR SINE MIR -50 212 32 388 318 88 7 chr1 67162014 67162162 -215031502 - MIR SINE MIR -1 261 102 197 296 70 0 chr1 67162383 67162454 -215031210 - MIR3 SINE MIR -52 156 81 306 280 76 38 chr1 67162548 67162680 -215030984 + MIR SINE MIR 5 141 -121 2712 48 0 0 chr1 67162695 67163006 -215030658 - AluY SINE Alu 0 311 1 1506 171 54 13 chr1 67163198 67163517 -215030147 + MER33 DNA MER1_type 1 323 -1 285 118 78 0 chr1 67163523 67163574 -215030090 + L2 LINE L2 3259 3313 0 25 0 0 0 chr1 67163837 67163862 -215029802 + AT_rich Low_complexity Low_complexity 1 25 0 483 212 288 0 chr1 67164552 67164698 -215028966 - MER5A DNA MER1_type -1 188 1 1225 237 59 41 chr1 67165076 67165601 -215028063 - L2 LINE L2 -1 3312 2766 1578 183 39 0 chr1 67165929 67166241 -215027423 - MER33 DNA MER1_type 0 324 1 196 289 133 12 chr1 67166259 67166342 -215027322 + L2 LINE L2 2967 3059 -213 303 238 48 12 chr1 67166359 67166443 -215027221 + MIR SINE MIR 176 262 0 257 268 62 80 chr1 67166528 67166640 -215027024 + L2 LINE L2 3204 3313 0 519 313 7 7 chr1 67166822 67166966 -215026698 + MIR SINE MIR 1 144 -118 273 57 0 0 chr1 67167087 67167122 -215026542 + (TG)n Simple_repeat Simple_repeat 2 36 0 304 356 17 46 chr1 67167510 67167684 -215025980 + HAL1 LINE L1 1766 1934 -573 1086 163 62 0 chr1 67169376 67169554 -215024110 - MER5A DNA MER1_type 0 189 1 486 267 249 14 chr1 67169822 67170027 -215023637 + MIR SINE MIR 5 252 -10 354 392 51 17 chr1 67170051 67170242 -215023422 + L2 LINE L2 2511 2721 -593 1805 174 78 59 chr1 67170242 67170595 -215023069 + MSTB1 LTR MaLR 1 366 -66 2125 47 0 20 chr1 67170595 67170892 -215022772 - AluY SINE Alu 0 324 33 1805 174 78 59 chr1 67170892 67170961 -215022703 + MSTB1 LTR MaLR 366 432 0 354 392 51 17 chr1 67170961 67171121 -215022543 + L2 LINE L2 2721 2874 -440 253 167 0 21 chr1 67171351 67171399 -215022265 + MLT1J LTR MaLR 1 47 -464 229 333 28 0 chr1 67171413 67171485 -215022179 + LTR67 LTR ERVL 114 187 -370 237 233 17 17 chr1 67171837 67171897 -215021767 + LTR33A LTR ERVL 444 503 -20 2443 69 0 3 chr1 67172049 67172352 -215021312 + AluY SINE Alu 1 302 -9 400 348 31 40 chr1 67172828 67173055 -215020609 + MIR SINE MIR 25 249 -13 1084 136 0 0 chr1 67173153 67173300 -215020364 + FRAM SINE Alu 5 151 -25 2103 94 0 109 chr1 67174827 67175177 -215018487 + AluSq SINE Alu 1 312 -1 329 325 24 86 chr1 67175294 67175503 -215018161 - MIR SINE MIR -46 216 21 1594 236 82 27 chr1 67175604 67176405 -215017259 + L1MC4 LINE L1 5290 6157 -9 532 234 136 0 chr1 67176545 67176699 -215016965 + MIR SINE MIR 88 262 0 268 224 53 26 chr1 67178118 67178194 -215015470 - MLT1K LTR MaLR -2 586 509 2073 161 40 11 chr1 67179033 67179387 -215014277 - MLT1A1 LTR MaLR -1 364 1 307 281 92 56 chr1 67179802 67179998 -215013666 + MIR SINE MIR 20 222 -40 243 313 60 0 chr1 67180090 67180157 -215013507 + MIR SINE MIR 19 89 -173 * 451 217 16 85 chr1 67180155 67180284 -215013380 - L2 LINE L2 -4 3309 3190 512 335 7 13 chr1 67180442 67180594 -215013070 + MIR3 SINE MIR 20 170 -38 494 287 102 0 chr1 67180703 67180919 -215012745 - MIR SINE MIR -4 258 21 508 290 165 0 chr1 67181559 67181735 -215011929 - MIR SINE MIR -21 241 37 186 368 0 0 chr1 67182352 67182420 -215011244 + MIR SINE MIR 36 103 -105 438 250 55 33 chr1 67182877 67183042 -215010622 + MIR SINE MIR 42 206 -56 354 191 0 0 chr1 67183053 67183121 -215010543 + L1MC5 LINE L1 7712 7779 -182 6571 94 0 7 chr1 67183162 67184202 -215009462 - L1PA13 LINE L1 -1 6162 5120 4270 169 4 7 chr1 67184209 67184968 -215008696 + L1PA13 LINE L1 4379 5135 -1011 3114 184 48 3 chr1 67184959 67185985 -215007679 + L1MB7 LINE L1 4847 5913 -271 * 3969 79 0 2 chr1 67185985 67186460 -215007204 + L1PA8 LINE L1 5681 6171 -1 1525 172 46 14 chr1 67186460 67186742 -215006922 + L1MB8 LINE L1 5879 6172 -6 425 213 43 28 chr1 67186778 67186919 -215006745 + L1MC5 LINE L1 7794 7936 -25 218 273 57 11 chr1 67187042 67187130 -215006534 - L3b LINE CR1 -206 1377 1286 414 271 8 17 chr1 67187567 67187685 -215005979 + MLT1L LTR MaLR 124 240 -375 368 265 10 10 chr1 67187925 67188027 -215005637 + MLT1L LTR MaLR 471 572 -43 242 274 24 24 chr1 67188077 67188161 -215005503 + MIR SINE MIR 30 113 -95 886 201 46 0 chr1 67188175 67188349 -215005315 - MER5A DNA MER1_type -7 182 1 388 278 56 14 chr1 67188351 67188495 -215005169 + MIR SINE MIR 113 262 0 525 271 72 28 chr1 67189191 67189381 -215004283 - MIR SINE MIR -12 250 55 216 323 77 58 chr1 67189408 67189563 -215004101 - MIR SINE MIR -58 204 47 413 215 25 58 chr1 67189902 67190023 -215003641 - MIR SINE MIR -75 187 71 321 259 241 0 chr1 67190122 67190234 -215003430 + MIR SINE MIR 86 224 -38 246 32 0 0 chr1 67190262 67190293 -215003371 + (TG)n Simple_repeat Simple_repeat 2 32 0 1388 203 121 22 chr1 67190413 67190777 -215002887 - L1ME3A LINE L1 -6 6164 5765 281 282 29 38 chr1 67190799 67190947 -215002717 - MIR SINE MIR -62 146 34 387 330 39 69 chr1 67191342 67191575 -215002089 - L2 LINE L2 -64 3208 2983 543 267 27 33 chr1 67191606 67191756 -215001908 - MER5B DNA MER1_type -16 162 14 4178 161 23 46 chr1 67191994 67192738 -215000926 - L1MB3 LINE L1 -2 6181 5422 1883 114 0 8 chr1 67192738 67192992 -215000672 - AluSc SINE Alu -57 252 1 4178 161 23 46 chr1 67192992 67193017 -215000647 - L1MB3 LINE L1 -761 5422 5398 227 53 0 26 chr1 67193017 67193055 -215000609 + (TTGG)n Simple_repeat Simple_repeat 4 40 0 4178 161 23 46 chr1 67193055 67193767 -214999897 - L1MB3 LINE L1 -785 5398 4762 826 168 37 12 chr1 67193777 67193938 -214999726 - FRAM SINE Alu -9 167 3 3538 200 25 26 chr1 67193944 67194744 -214998920 - L1MB3 LINE L1 -1378 4768 3970 440 355 59 10 chr1 67194750 67195040 -214998624 - L2 LINE L2 -594 2720 2417 2297 95 6 13 chr1 67195409 67195724 -214997940 + AluSp SINE Alu 1 313 0 218 260 301 50 chr1 67196527 67196746 -214996918 + L2 LINE L2 2999 3272 0 2753 166 19 11 chr1 67196837 67197300 -214996364 - MLT1C LTR MaLR 0 467 1 258 275 64 37 chr1 67197420 67197529 -214996135 + MIR3 SINE MIR 94 205 -3 1337 148 56 18 chr1 67198097 67198522 -214995142 - LTR54 LTR ERV1 0 510 3 413 293 132 0 chr1 67198754 67198928 -214994736 + MIR SINE MIR 60 256 -6 180 197 49 66 chr1 67198948 67199009 -214994655 + L2 LINE L2 3214 3273 -40 2553 231 19 8 chr1 67199446 67199982 -214993682 + MLT1F LTR MaLR 1 542 0 1598 241 83 40 chr1 67200123 67200704 -214992960 + L1ME3A LINE L1 5560 6165 -5 319 336 51 30 chr1 67200868 67201103 -214992561 - MIR SINE MIR -3 259 20 208 93 70 0 chr1 67201193 67201236 -214992428 + (TATG)n Simple_repeat Simple_repeat 3 48 0 569 262 142 40 chr1 67201542 67201916 -214991748 + MLT1J LTR MaLR 50 461 -50 540 211 0 26 chr1 67202575 67202689 -214990975 - MIR SINE MIR -81 181 71 180 342 0 13 chr1 67202683 67202759 -214990905 + MIR SINE MIR 185 259 -3 * 810 262 9 31 chr1 67202919 67202962 -214990702 - MIR SINE MIR -32 230 188 2541 214 74 22 chr1 67202962 67203545 -214990119 - MER90 LTR ERV1 -1 613 1 810 262 9 31 chr1 67203545 67203730 -214989934 - MIR SINE MIR -74 188 7 348 290 89 8 chr1 67204237 67204361 -214989303 + MIR SINE MIR 70 203 -59 549 323 82 26 chr1 67204608 67204840 -214988824 + MIR SINE MIR 12 256 -6 687 260 35 0 chr1 67205266 67205435 -214988229 - MIR SINE MIR -74 188 14 414 248 149 37 chr1 67206545 67206706 -214986958 + MER5A DNA MER1_type 9 187 -2 2947 161 6 12 chr1 67207318 67207816 -214985848 + L1MB2 LINE L1 5670 6164 -7 180 286 18 0 chr1 67207838 67207894 -214985770 + MIR SINE MIR 90 146 -116 320 315 149 14 chr1 67208051 67208327 -214985337 + L2 LINE L2 2048 2360 -954 592 317 12 44 chr1 67208342 67208591 -214985073 - MLT1I LTR MaLR -71 338 98 240 226 0 65 chr1 67209381 67209474 -214984190 + LTR67 LTR ERVL 458 544 -13 241 170 0 38 chr1 67209474 67209527 -214984137 + MIR SINE MIR 92 142 -66 358 316 0 29 chr1 67209719 67209855 -214983809 - MIR SINE MIR -31 231 100 1217 136 0 0 chr1 67209867 67210043 -214983621 + AluSg/x SINE Alu 129 304 -8 259 364 10 0 chr1 67210651 67210750 -214982914 - MIR SINE MIR -64 144 45 2487 216 78 9 chr1 67210801 67211328 -214982336 - MLT1F1 LTR MaLR -4 563 1 347 288 75 44 chr1 67211374 67211600 -214982064 + L2 LINE L2 2726 2958 -356 319 276 0 67 chr1 67211771 67211876 -214981788 + L2 LINE L2 3216 3313 0 287 349 40 46 chr1 67211851 67212003 -214981661 + L3 LINE CR1 1400 1550 -27 * 276 30 0 0 chr1 67212732 67212765 -214980899 + (CA)n Simple_repeat Simple_repeat 1 33 0 383 165 10 29 chr1 67212859 67212962 -214980702 + CT-rich Low_complexity Low_complexity 1 101 0 196 152 0 0 chr1 67213204 67213237 -214980427 - MIR SINE MIR -71 137 105 2020 138 14 0 chr1 67213564 67213861 -214979803 + AluSx SINE Alu 1 301 -11 736 294 57 17 chr1 67213928 67214227 -214979437 - L3 LINE CR1 -73 1504 1194 553 350 16 0 chr1 67214302 67214496 -214979168 + MIR SINE MIR 56 252 -10 2420 66 0 10 chr1 67214650 67214954 -214978710 - AluSg SINE Alu -9 301 1 1275 140 16 0 chr1 67214988 67215174 -214978490 - MER5A DNA MER1_type 0 189 1 333 335 57 5 chr1 67215224 67215418 -214978246 - MIR SINE MIR -40 222 19 479 273 31 8 chr1 67215418 67215546 -214978118 - MIR SINE MIR -115 147 17 258 234 159 55 chr1 67216113 67216258 -214977406 + MIR SINE MIR 4 163 -99 207 315 139 42 chr1 67216383 67216548 -214977116 + L2 LINE L2 2910 3090 -182 256 304 82 22 chr1 67217106 67217241 -214976423 - L2 LINE L2 -319 2953 2811 245 311 76 45 chr1 67217794 67217926 -214975738 + MIR SINE MIR 16 151 -111 941 232 86 30 chr1 67217952 67218474 -214975190 - MLT1F LTR MaLR 0 559 19 241 250 42 104 chr1 67218584 67218680 -214974984 - MIR3 SINE MIR -14 194 105 223 364 78 22 chr1 67218821 67218966 -214974698 + MIR3 SINE MIR 3 152 -68 438 320 54 14 chr1 67219051 67219198 -214974466 - MIR SINE MIR -74 188 36 187 228 38 76 chr1 67219400 67219479 -214974185 - MIR SINE MIR -74 188 113 186 43 0 0 chr1 67219840 67219863 -214973801 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 429 248 17 26 chr1 67220277 67220394 -214973270 + MIR SINE MIR 31 146 -116 251 183 211 14 chr1 67220765 67220836 -214972828 + MIR3 SINE MIR 87 171 -37 630 243 109 30 chr1 67220863 67221065 -214972599 + MIR SINE MIR 31 248 -14 352 336 56 0 chr1 67221854 67221961 -214971703 + MIR SINE MIR 25 137 -71 1566 198 155 36 chr1 67222032 67222476 -214971188 - MLT1D LTR MaLR -2 503 7 542 310 83 8 chr1 67222742 67222984 -214970680 + MIR SINE MIR 3 262 0 12888 95 3 13 chr1 67223466 67225330 -214968334 + L1PA7 LINE L1 2 1854 -4607 14263 80 2 18 chr1 67225330 67227141 -214966523 + L1PA7 LINE L1 3837 5639 -830 2302 97 0 3 chr1 67227141 67227440 -214966224 - AluY SINE Alu -9 302 5 14263 80 2 18 chr1 67227440 67228242 -214965422 + L1PA7 LINE L1 5639 6452 -17 324 70 0 0 chr1 67228266 67228309 -214965355 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 203 262 0 0 chr1 67228773 67228815 -214964849 - MIR SINE MIR -113 149 108 1312 180 58 4 chr1 67229024 67229304 -214964360 + L1MB5 LINE L1 5657 5958 -216 446 211 9 64 chr1 67229305 67229414 -214964250 + L1MB5 LINE L1 6058 6160 -14 622 265 10 56 chr1 67229414 67229610 -214964054 - MLT1J LTR MaLR -85 426 240 226 358 47 14 chr1 67229614 67229829 -214963835 - L2 LINE L2 -207 3065 2844 626 325 48 8 chr1 67230810 67231062 -214962602 - MIR SINE MIR 0 262 1 577 287 61 19 chr1 67231291 67231720 -214961944 + LTR33 LTR ERVL 4 508 -13 239 279 37 134 chr1 67232548 67232817 -214960847 - L2 LINE L2 -1 3271 3029 267 337 111 15 chr1 67233296 67233495 -214960169 + L2 LINE L2 2842 3059 -213 247 353 169 24 chr1 67233655 67233910 -214959754 - L2 LINE L2 0 3272 2981 998 16 16 0 chr1 67233930 67234053 -214959611 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 241 116 0 47 chr1 67234053 67234096 -214959568 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 461 161 17 25 chr1 67234096 67234214 -214959450 + GA-rich Low_complexity Low_complexity 4 120 0 2422 107 51 25 chr1 67234774 67235129 -214958535 - THE1B LTR MaLR 0 364 1 444 123 0 0 chr1 67235336 67235409 -214958255 + (TG)n Simple_repeat Simple_repeat 2 74 0 379 55 0 0 chr1 67235438 67235493 -214958171 - L1PA14 LINE L1 -1 6160 6106 2163 189 64 14 chr1 67235494 67235934 -214957730 - MLT2B1 LTR ERVL -58 462 1 1364 216 109 57 chr1 67235934 67235966 -214957698 + MLT1F1 LTR MaLR 8 37 -530 1834 170 170 34 chr1 67235966 67236377 -214957287 - MLT1C LTR MaLR 0 467 1 1364 216 109 57 chr1 67236377 67236884 -214956780 + MLT1F1 LTR MaLR 37 567 0 302 207 281 0 chr1 67237078 67237160 -214956504 + MIR SINE MIR 49 153 -109 306 320 60 0 chr1 67237163 67237263 -214956401 - L2 LINE L2 -6 3266 3161 649 283 47 9 chr1 67237363 67237575 -214956089 - MIR SINE MIR -42 220 1 620 330 107 14 chr1 67237592 67237946 -214955718 - LTR16A LTR ERVL -8 442 56 187 229 21 0 chr1 67238517 67238565 -214955099 + L2 LINE L2 3261 3309 -4 2290 158 17 8 chr1 67238917 67239279 -214954385 + MLT1A1 LTR MaLR 1 365 0 262 315 70 88 chr1 67239748 67239793 -214953871 - L2 LINE L2 -52 3220 3176 2356 104 0 0 chr1 67239793 67240092 -214953572 + AluSx SINE Alu 1 299 -13 262 315 70 88 chr1 67240092 67240521 -214953143 - L2 LINE L2 -96 3176 2736 477 342 36 10 chr1 67240923 67241116 -214952548 + MIR SINE MIR 9 206 -56 495 296 77 23 chr1 67241900 67242120 -214951544 + MIR SINE MIR 19 250 -12 497 262 47 7 chr1 67242441 67242590 -214951074 - L2 LINE L2 -3 3310 3156 830 303 29 0 chr1 67242767 67243005 -214950659 + MIR SINE MIR 16 260 -2 614 319 42 17 chr1 67243311 67243549 -214950115 - MIR SINE MIR -4 258 15 234 274 16 0 chr1 67243607 67243669 -214949995 - L2 LINE L2 -1 3271 3209 2065 118 0 11 chr1 67243833 67244120 -214949544 + AluSc SINE Alu 1 284 -25 195 69 0 0 chr1 67244123 67244152 -214949512 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 369 258 91 15 chr1 67244508 67244640 -214949024 + L2 LINE L2 401 542 -2772 1511 346 29 12 chr1 67245041 67245952 -214947712 - HERV16 LTR ERVL -606 5158 4168 2203 294 19 29 chr1 67245965 67246612 -214947052 - HERV16 LTR ERVL -2621 2375 1736 2417 312 70 30 chr1 67246660 67247535 -214946129 - HERV16 LTR ERVL -3422 1574 608 2234 106 0 3 chr1 67247535 67247837 -214945827 + AluSc SINE Alu 1 301 -8 2417 312 70 30 chr1 67247837 67248307 -214945357 - HERV16 LTR ERVL -4388 608 158 376 233 57 50 chr1 67248383 67248542 -214945122 - LTR16A LTR ERVL -195 255 96 257 253 293 7 chr1 67248709 67248859 -214944805 + L2 LINE L2 3103 3295 -18 1390 171 60 73 chr1 67249102 67249418 -214944246 + AluJo SINE Alu 1 312 0 662 274 105 18 chr1 67250074 67250293 -214943371 + MIR SINE MIR 17 254 -8 420 325 47 12 chr1 67250315 67250484 -214943180 - MIR SINE MIR -77 185 11 221 204 0 0 chr1 67250485 67250518 -214943146 + (CA)n Simple_repeat Simple_repeat 1 36 -8 2384 126 33 33 chr1 67250518 67250882 -214942782 + THE1B LTR MaLR 1 364 0 221 204 0 0 chr1 67250882 67250892 -214942772 + (CA)n Simple_repeat Simple_repeat 35 44 0 25 31 0 0 chr1 67251007 67251039 -214942625 + AT_rich Low_complexity Low_complexity 1 32 0 462 299 56 33 chr1 67251080 67251309 -214942355 - MIR SINE MIR -28 234 3 32 26 0 0 chr1 67252081 67252120 -214941544 + AT_rich Low_complexity Low_complexity 1 39 0 446 302 50 6 chr1 67252322 67252481 -214941183 - MIR SINE MIR -40 222 57 438 248 48 19 chr1 67253301 67253406 -214940258 + MER81 DNA DNA 3 110 -4 184 225 25 0 chr1 67253410 67253450 -214940214 + L2 LINE L2 3189 3229 -43 196 313 0 0 chr1 67253458 67253506 -214940158 + MIR SINE MIR 102 149 -113 186 43 0 0 chr1 67253573 67253596 -214940068 + (TTG)n Simple_repeat Simple_repeat 2 24 0 182 259 0 74 chr1 67253685 67253739 -214939925 + L2 LINE L2 3198 3247 -25 231 269 51 0 chr1 67253744 67253822 -214939842 + (TAAA)n Simple_repeat Simple_repeat 4 85 0 237 297 55 11 chr1 67254404 67254495 -214939169 + L2 LINE L2 3147 3241 -31 714 112 15 15 chr1 67254503 67254637 -214939027 + (GAAA)n Simple_repeat Simple_repeat 1 134 0 272 185 0 15 chr1 67254623 67254688 -214938976 + G-rich Low_complexity Low_complexity 2 65 0 * 258 303 34 0 chr1 67254803 67254892 -214938772 - MIR SINE MIR -3 259 168 * 519 253 66 35 chr1 67254887 67255085 -214938579 + L2 LINE L2 3106 3309 -4 240 35 0 0 chr1 67255106 67255135 -214938529 + (CAA)n Simple_repeat Simple_repeat 2 30 0 216 348 73 44 chr1 67255177 67255381 -214938283 - MIR SINE MIR -32 230 21 1131 228 45 42 chr1 67256595 67256973 -214936691 + L1MC4a LINE L1 6828 7206 -602 2004 220 31 35 chr1 67256978 67257520 -214936144 + L1MC4a LINE L1 7269 7808 0 232 237 145 101 chr1 67257871 67258099 -214935565 - MIR SINE MIR -14 248 11 1620 146 8 4 chr1 67258125 67258372 -214935292 - AluJo SINE Alu -60 252 5 252 0 0 0 chr1 67258644 67258672 -214934992 + (A)n Simple_repeat Simple_repeat 1 28 0 322 244 17 0 chr1 67258780 67258899 -214934765 + CT-rich Low_complexity Low_complexity 3 123 0 224 286 63 0 chr1 67259365 67259428 -214934236 + MER5A DNA MER1_type 110 176 -13 422 284 135 7 chr1 67260000 67260148 -214933516 + MIR SINE MIR 19 185 -77 * 736 298 33 47 chr1 67260135 67260498 -214933166 + L2 LINE L2 2956 3313 0 710 143 0 0 chr1 67260637 67260749 -214932915 + L1MD3 LINE L1 7875 7986 -9 475 315 80 43 chr1 67261103 67261448 -214932216 + L1MDa LINE L1 1537 1931 -970 1880 168 9 94 chr1 67261448 67261872 -214931792 - MLT1B LTR MaLR 0 390 3 475 315 80 43 chr1 67261872 67261992 -214931672 + L1MDa LINE L1 1931 2045 -856 338 321 98 19 chr1 67261998 67262415 -214931249 + L1MDa LINE L1 2504 2953 -3587 183 246 0 0 chr1 67262463 67262520 -214931144 + (TA)n Simple_repeat Simple_repeat 2 58 0 323 173 0 0 chr1 67262766 67262818 -214930846 + L2 LINE L2 3221 3272 0 6919 95 2 13 chr1 67262902 67264113 -214929551 - L1PA8 LINE L1 -1 6171 4961 3214 101 1 3 chr1 67264313 67264841 -214928823 - L1PA8A LINE L1 -687 5444 4917 268 266 16 0 chr1 67264841 67264905 -214928759 - MIR SINE MIR -33 229 165 1011 115 6 42 chr1 67264908 67265073 -214928591 + LTR10A LTR ERV1 390 548 -61 659 278 23 11 chr1 67265074 67265250 -214928414 - MIR SINE MIR -82 180 3 2072 143 0 3 chr1 67265369 67265669 -214927995 - AluSx SINE Alu -13 299 1 292 285 60 60 chr1 67266699 67266850 -214926814 - MIR SINE MIR -61 201 51 336 326 51 0 chr1 67266999 67267097 -214926567 - MIR3 SINE MIR -9 199 97 186 331 156 67 chr1 67267200 67267605 -214926059 - L2 LINE L2 0 3272 2832 354 250 77 39 chr1 67267688 67267844 -214925820 - MIR SINE MIR -73 189 28 276 30 0 0 chr1 67268223 67268256 -214925408 + (TC)n Simple_repeat Simple_repeat 2 34 0 44123 47 2 1 chr1 67268795 67274934 -214918730 + L1PA4 LINE L1 9 6155 0 359 305 38 0 chr1 67274953 67275084 -214918580 - LTR33A LTR ERVL -7 516 381 232 363 38 25 chr1 67275218 67275378 -214918286 - LTR33 LTR ERVL -349 172 11 364 302 74 5 chr1 67275456 67275658 -214918006 - L1ME4a LINE L1 -175 5946 5731 2684 231 50 82 chr1 67275659 67277196 -214916468 + L1ME3 LINE L1 4680 6151 -11 785 249 31 31 chr1 67277294 67277519 -214916145 + MIR SINE MIR 1 225 -37 1015 145 13 0 chr1 67278120 67278272 -214915392 - MER2 DNA MER2_type -184 161 8 336 176 0 0 chr1 67278311 67278379 -214915285 + (TG)n Simple_repeat Simple_repeat 2 69 0 677 338 88 35 chr1 67278412 67278900 -214914764 + LTR33 LTR ERVL 1 514 -7 365 348 30 15 chr1 67278994 67279129 -214914535 + L2 LINE L2 3125 3261 -11 185 328 0 17 chr1 67279138 67279196 -214914468 + MIR3 SINE MIR 129 185 -23 228 333 54 54 chr1 67279922 67280051 -214913613 + L2 LINE L2 3102 3230 -42 521 259 120 0 chr1 67280077 67280235 -214913429 + MER104 DNA MER2_type 4 180 0 336 320 130 10 chr1 67280240 67280440 -214913224 - MIR SINE MIR -19 243 20 253 293 143 14 chr1 67281404 67281551 -214912113 - L2 LINE L2 -182 3090 2925 2070 206 27 93 chr1 67281865 67281954 -214911710 + MLT2B3 LTR ERVL 6 99 -455 1930 105 4 0 chr1 67281954 67282231 -214911433 - AluSp SINE Alu 0 312 35 2070 206 27 93 chr1 67282231 67282691 -214910973 + MLT2B3 LTR ERVL 99 518 -36 482 0 17 0 chr1 67282691 67282749 -214910915 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2070 206 27 93 chr1 67282749 67282784 -214910880 + MLT2B3 LTR ERVL 518 554 0 196 274 113 0 chr1 67283130 67283192 -214910472 + L2 LINE L2 2901 2969 -303 22 56 0 0 chr1 67283224 67283260 -214910404 + AT_rich Low_complexity Low_complexity 1 36 0 307 307 16 0 chr1 67283287 67283414 -214910250 + MER103 DNA DNA 31 159 -7 302 228 13 13 chr1 67283512 67283591 -214910073 + GA-rich Low_complexity Low_complexity 2 80 0 21 0 0 0 chr1 67284208 67284229 -214909435 + AT_rich Low_complexity Low_complexity 1 21 0 3743 154 67 7 chr1 67284320 67284997 -214908667 - MER72 LTR ERV1 0 722 6 1999 172 53 34 chr1 67285970 67286388 -214907276 - MSTB LTR MaLR 0 426 1 551 230 95 0 chr1 67286605 67286753 -214906911 + MIR SINE MIR 101 262 0 1488 173 88 3 chr1 67286802 67287155 -214906509 - LTR52 LTR ERVL -2 419 37 918 176 181 5 chr1 67287157 67287550 -214906114 + LTR54B LTR ERV1 8 510 0 777 247 133 61 chr1 67287868 67288395 -214905269 + MLT1F1 LTR MaLR 3 567 0 2884 95 10 20 chr1 67288574 67289138 -214904526 - L1PA13 LINE L1 -469 5694 5133 3313 104 8 2 chr1 67289138 67289616 -214904048 + L1PA13 LINE L1 5681 6162 -1 735 217 43 87 chr1 67289616 67289916 -214903748 - LTR37B LTR ERV1 -172 296 10 195 276 270 8 chr1 67290300 67290421 -214903243 + MIR SINE MIR 16 166 -62 263 306 48 16 chr1 67290828 67290952 -214902712 + MIR SINE MIR 63 190 -72 283 242 25 0 chr1 67290997 67291097 -214902567 + L1ME LINE L1 5732 5834 -336 1324 89 18 110 chr1 67291151 67291443 -214902221 + L1PB3 LINE L1 5233 5500 -654 992 9 0 0 chr1 67291469 67291581 -214902083 + L1PA5 LINE L1 6031 6142 -12 405 155 6 19 chr1 67291581 67291605 -214902059 + (TA)n Simple_repeat Simple_repeat 2 25 -133 4156 114 49 0 chr1 67291605 67292283 -214901381 + L1PB3 LINE L1 5483 6147 -7 405 155 6 19 chr1 67292283 67292373 -214901291 + (TA)n Simple_repeat Simple_repeat 25 158 0 23 33 0 0 chr1 67292567 67292597 -214901067 + AT_rich Low_complexity Low_complexity 1 30 0 402 294 56 20 chr1 67292758 67293010 -214900654 - Tigger8 DNA MER2_type -210 456 196 2257 169 47 5 chr1 67293058 67293465 -214900199 + MSTB LTR MaLR 1 424 -2 280 352 75 38 chr1 67293505 67293718 -214899946 + L2 LINE L2 2867 3087 -185 2358 66 7 3 chr1 67294004 67294309 -214899355 - AluY SINE Alu -5 306 1 362 338 133 13 chr1 67294790 67295024 -214898640 + MIR SINE MIR 1 262 0 256 309 72 66 chr1 67295024 67295176 -214898488 + MIR SINE MIR 99 251 -11 414 0 0 0 chr1 67295254 67295300 -214898364 + (TC)n Simple_repeat Simple_repeat 1 46 0 234 0 0 0 chr1 67295299 67295325 -214898339 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 255 257 0 3 chr1 67296192 67296311 -214897353 - MER117 DNA MER1_type -42 155 1 406 363 34 7 chr1 67296538 67296684 -214896980 - L2 LINE L2 0 3272 3123 319 304 176 0 chr1 67296669 67296817 -214896847 - L3 LINE CR1 -320 1257 1084 * 563 301 21 21 chr1 67297040 67297120 -214896544 + MIR SINE MIR 12 91 -171 664 255 0 92 chr1 67297120 67297316 -214896348 + MER45A DNA AcHobo 1 178 0 563 301 21 21 chr1 67297316 67297421 -214896243 + MIR SINE MIR 90 197 -65 240 204 41 0 chr1 67298055 67298104 -214895560 - L2 LINE L2 -12 3260 3210 616 279 46 71 chr1 67298133 67298373 -214895291 - MIR SINE MIR -21 241 8 194 286 53 53 chr1 67298558 67298691 -214894973 + MIR SINE MIR 118 250 -12 1505 225 73 87 chr1 67298781 67299483 -214894181 - HsTC2a DNA Tc2 -36 708 17 2238 110 7 0 chr1 67299484 67299814 -214893850 + AluSx SINE Alu 3 334 0 276 277 0 60 chr1 67299945 67300028 -214893636 - MIR3 SINE MIR -45 163 86 251 292 15 11 chr1 67300601 67300708 -214892956 - L1ME2 LINE L1 -72 6094 5985 207 206 0 59 chr1 67300752 67300820 -214892844 + (ATTAG)n Simple_repeat Simple_repeat 5 68 0 3462 219 38 24 chr1 67300878 67302564 -214891100 + L1 LINE L1 1 2533 -4676 2037 205 9 9 chr1 67302578 67303037 -214890627 - L1 LINE L1 -1044 5102 4644 9254 178 37 26 chr1 67303071 67303810 -214889854 + L1 LINE L1 3862 4591 -2617 1336 194 101 25 chr1 67303810 67304088 -214889576 - AluJo SINE Alu -13 299 1 9254 178 37 26 chr1 67304088 67305539 -214888125 + L1 LINE L1 4591 6078 -1130 1291 190 15 7 chr1 67305538 67305900 -214887764 - L1ME LINE L1 -620 5542 5176 * 666 303 36 58 chr1 67306133 67306591 -214887073 + MLT1K LTR MaLR 73 588 0 2907 13 0 0 chr1 67306772 67307090 -214886574 - AluYb8 SINE Alu 0 318 1 252 224 0 0 chr1 67307374 67307441 -214886223 + (TATG)n Simple_repeat Simple_repeat 1 67 0 252 224 0 0 chr1 67307798 67307865 -214885799 + (TATG)n Simple_repeat Simple_repeat 1 67 0 311 338 7 19 chr1 67307878 67308032 -214885632 + (TG)n Simple_repeat Simple_repeat 1 152 0 299 256 5 5 chr1 67308056 67308243 -214885421 + (TG)n Simple_repeat Simple_repeat 1 187 0 469 311 55 6 chr1 67308264 67308428 -214885236 - MER91A DNA MER1_type -1 195 24 291 259 133 44 chr1 67309117 67309252 -214884412 + MIR SINE MIR 86 232 -30 228 200 15 108 chr1 67309333 67309398 -214884266 + L2 LINE L2 3209 3267 -5 212 167 0 0 chr1 67309767 67309803 -214883861 + GA-rich Low_complexity Low_complexity 1 36 0 294 290 47 28 chr1 67310054 67310161 -214883503 - MIR SINE MIR -120 142 34 186 344 53 30 chr1 67310320 67310451 -214883213 - L2 LINE L2 -221 3051 2918 340 321 28 0 chr1 67310515 67310621 -214883043 + MIR SINE MIR 72 180 -82 435 259 178 30 chr1 67310689 67310886 -214882778 + L2 LINE L2 3088 3313 0 1917 173 93 6 chr1 67311643 67312007 -214881657 - MSTD LTR MaLR 0 396 1 3862 119 45 35 chr1 67312263 67312969 -214880695 + LTR1 LTR ERV1 73 785 0 1180 175 57 0 chr1 67312971 67313182 -214880482 + MER58A DNA MER1_type 2 224 0 287 372 51 7 chr1 67313255 67313392 -214880272 + MIR3 SINE MIR 10 152 -56 431 205 116 89 chr1 67313440 67313664 -214880000 - MLT1J LTR MaLR 0 511 282 198 277 82 82 chr1 67313847 67314006 -214879658 - MIR SINE MIR -27 235 77 244 253 63 25 chr1 67314126 67314205 -214879459 + MIR SINE MIR 103 184 -78 287 330 10 10 chr1 67314268 67314365 -214879299 + MIR3 SINE MIR 84 180 -28 282 292 62 42 chr1 67314422 67314566 -214879098 + MIR SINE MIR 46 192 -70 212 246 15 92 chr1 67314564 67314629 -214879035 + L2 LINE L2 3134 3193 -79 * 23 0 0 0 chr1 67315153 67315176 -214878488 + GC_rich Low_complexity Low_complexity 1 23 0 234 128 0 0 chr1 67315430 67315469 -214878195 + (TCC)n Simple_repeat Simple_repeat 3 41 0 180 0 0 0 chr1 67315559 67315579 -214878085 + (GGGAA)n Simple_repeat Simple_repeat 4 23 0 2403 38 27 3 chr1 67315930 67316222 -214877442 + AluY SINE Alu 1 299 -12 358 349 60 68 chr1 67317274 67317626 -214876038 - L2 LINE L2 0 3272 2924 1648 153 114 52 chr1 67317958 67318419 -214875245 - LTR10A LTR ERV1 -63 546 13 398 258 46 7 chr1 67318507 67318658 -214875006 - L1MA10 LINE L1 -10 6324 6168 4272 218 73 42 chr1 67318666 67320093 -214873571 - L1M4 LINE L1 -778 5368 3874 2278 78 3 72 chr1 67320093 67320426 -214873238 - AluSp SINE Alu -3 310 1 4272 218 73 42 chr1 67320426 67320757 -214872907 - L1M4 LINE L1 -2272 3874 3555 1981 109 9 52 chr1 67320752 67321101 -214872563 + L1PA15 LINE L1 5695 6028 -137 * 423 144 24 16 chr1 67321105 67321230 -214872434 - Zaphod DNA AcHobo -3216 815 690 366 210 32 48 chr1 67321252 67321376 -214872288 - L1M4 LINE L1 -2588 3558 3437 8056 166 40 8 chr1 67321380 67324056 -214869608 - L1MA9 LINE L1 -5 6307 3543 1568 241 62 24 chr1 67324056 67324592 -214869072 - L1MEc LINE L1 -5803 593 38 313 261 109 8 chr1 67324818 67324937 -214868727 - LTR33 LTR ERVL -131 390 260 247 305 46 53 chr1 67324990 67325141 -214868523 - LTR33A LTR ERVL -359 164 15 2030 157 3 0 chr1 67325422 67325728 -214867936 + AluJo SINE Alu 1 307 -5 282 333 29 0 chr1 67325868 67325973 -214867691 + MIR SINE MIR 50 157 -105 542 309 22 27 chr1 67326551 67326774 -214866890 + L3 LINE CR1 1163 1384 -193 889 185 17 17 chr1 67326940 67327113 -214866551 - MER5A DNA MER1_type 0 189 17 407 315 72 0 chr1 67327448 67327670 -214865994 - L1MC/D LINE L1 -2159 5649 5412 286 311 99 31 chr1 67327737 67327959 -214865705 - L2 LINE L2 -346 2968 2732 1872 146 31 17 chr1 67328083 67328377 -214865287 + AluSx SINE Alu 1 298 -14 6471 77 0 7 chr1 67329653 67330693 -214862971 - L1PA8A LINE L1 0 6131 5104 216 346 71 16 chr1 67330697 67330824 -214862840 + MIR SINE MIR 47 180 -82 1235 180 5 0 chr1 67331512 67331712 -214861952 - MLT1A1 LTR MaLR -164 201 1 3111 113 0 11 chr1 67331883 67331958 -214861706 + L1PB1 LINE L1 5716 5790 -361 282 56 0 0 chr1 67331958 67331994 -214861670 + (CA)n Simple_repeat Simple_repeat 1 36 0 3111 113 0 11 chr1 67331994 67332347 -214861317 + L1PB1 LINE L1 5790 6141 -10 2414 75 3 16 chr1 67332347 67332654 -214861010 - AluY SINE Alu -8 303 1 3111 113 0 11 chr1 67332654 67332665 -214860999 + L1PB1 LINE L1 6141 6151 0 221 261 155 50 chr1 67332852 67333013 -214860651 - MIR SINE MIR -50 212 35 312 289 0 67 chr1 67333130 67333220 -214860444 - L2 LINE L2 -21 3251 3168 305 380 0 8 chr1 67333756 67333877 -214859787 + CT-rich Low_complexity Low_complexity 1 120 0 471 233 82 44 chr1 67335372 67335531 -214858133 + MIR SINE MIR 27 191 -71 281 246 87 0 chr1 67335677 67335746 -214857918 + MIR SINE MIR 41 115 -147 373 344 66 22 chr1 67336440 67336667 -214856997 + MIR SINE MIR 2 238 -24 277 213 13 40 chr1 67336709 67336784 -214856880 - L2 LINE L2 0 3272 3200 183 286 82 0 chr1 67337385 67337434 -214856230 + L2 LINE L2 3160 3212 -60 684 202 22 34 chr1 67337461 67337639 -214856025 - MER104 DNA MER2_type -4 176 1 368 296 89 101 chr1 67337706 67338121 -214855543 - L2 LINE L2 -5 3267 2858 341 302 86 7 chr1 67339351 67339490 -214854174 + MIR SINE MIR 97 246 -16 250 356 119 16 chr1 67339613 67339807 -214853857 + L2 LINE L2 3100 3313 0 244 236 56 14 chr1 67340236 67340308 -214853356 - L2 LINE L2 -66 3247 3173 772 287 35 9 chr1 67340440 67340670 -214852994 - MIR SINE MIR -7 255 20 27 0 0 0 chr1 67340670 67340697 -214852967 + AT_rich Low_complexity Low_complexity 1 27 0 1512 77 20 5 chr1 67340698 67340893 -214852771 - L1PB1 LINE L1 -9 6142 5945 304 290 47 9 chr1 67340933 67341040 -214852624 - L2 LINE L2 -280 2992 2882 1013 220 14 10 chr1 67341983 67342192 -214851472 + MIR SINE MIR 17 226 -36 361 279 27 87 chr1 67342569 67342656 -214851008 - MIR SINE MIR -4 258 186 2927 0 0 0 chr1 67342656 67342965 -214850699 - AluYa5 SINE Alu -2 309 1 361 279 27 87 chr1 67342965 67343060 -214850604 - MIR SINE MIR -76 186 87 195 325 130 39 chr1 67343221 67343375 -214850289 + L2 LINE L2 3105 3272 0 180 271 17 34 chr1 67343385 67343444 -214850220 + L2 LINE L2 2943 3000 -272 2289 67 0 14 chr1 67343461 67343781 -214849883 + AluY SINE Alu 1 316 0 394 247 0 0 chr1 67344001 67344078 -214849586 + L2 LINE L2 3193 3269 -3 193 213 21 0 chr1 67344152 67344199 -214849465 - MIR SINE MIR -98 164 117 338 209 0 77 chr1 67344537 67344628 -214849036 - L2 LINE L2 -1 3271 3188 420 203 36 72 chr1 67344869 67345007 -214848657 - MIR SINE MIR -96 166 34 15266 130 26 6 chr1 67345202 67347546 -214846118 - Tigger1 DNA MER2_type -26 2392 1 1228 149 48 0 chr1 67347546 67347754 -214845910 - Tigger1 DNA MER2_type -1 2417 2200 973 144 0 0 chr1 67347750 67347889 -214845775 - Tigger1 DNA MER2_type -2279 139 1 * 398 299 42 69 chr1 67347894 67348140 -214845524 + L2 LINE L2 2767 3005 -267 1017 186 40 10 chr1 67348140 67348339 -214845325 - MER3 DNA MER1_type -4 205 1 398 299 42 69 chr1 67348339 67348377 -214845287 + L2 LINE L2 3005 3043 -229 229 311 66 0 chr1 67348586 67348647 -214845017 + L2 LINE L2 3134 3198 -74 2081 112 0 0 chr1 67348710 67348986 -214844678 + AluSg SINE Alu 33 308 -2 243 304 167 0 chr1 67349371 67349473 -214844191 + L2 LINE L2 3151 3269 -3 606 263 228 14 chr1 67349809 67350094 -214843570 + L2 LINE L2 2876 3221 -92 313 290 20 30 chr1 67350604 67350704 -214842960 + L3b LINE CR1 1390 1488 -95 303 320 23 23 chr1 67351423 67351551 -214842113 - MIR3 SINE MIR -78 130 3 297 322 22 0 chr1 67351892 67351982 -214841682 - MIR SINE MIR -160 102 11 279 269 30 15 chr1 67352098 67352165 -214841499 - MIR SINE MIR -104 104 37 428 206 167 0 chr1 67352390 67352492 -214841172 + MIR SINE MIR 2 120 -142 2077 142 0 3 chr1 67352524 67352833 -214840831 - AluSx SINE Alu -4 308 1 185 209 239 0 chr1 67352878 67352945 -214840719 + MIR SINE MIR 168 250 -12 23 0 0 0 chr1 67353091 67353114 -214840550 + AT_rich Low_complexity Low_complexity 1 23 0 2707 223 124 17 chr1 67353458 67354833 -214838831 - L1MB8 LINE L1 -3 6175 4948 201 74 0 0 chr1 67354833 67354860 -214838804 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2308 45 4 0 chr1 67354869 67355135 -214838529 - L1PA8 LINE L1 -3 6169 5903 2707 223 124 17 chr1 67355135 67355327 -214838337 - L1MB8 LINE L1 -1237 4941 4414 293 196 0 0 chr1 67355328 67355384 -214838280 - MLT2B3 LTR ERVL 0 520 465 235 193 35 0 chr1 67355356 67355413 -214838251 - LTR66 LTR ERVL -153 457 399 * 2120 197 33 65 chr1 67355444 67355983 -214837681 - MLT2B3 LTR ERVL -40 508 1 3563 214 43 20 chr1 67355983 67356902 -214836762 - L1MB8 LINE L1 -1729 4417 3477 22 70 0 0 chr1 67357105 67357148 -214836516 + AT_rich Low_complexity Low_complexity 1 43 0 1852 135 17 9 chr1 67357331 67357680 -214835984 + Tigger4(Zombi) DNA MER2_type 1 2731 0 353 256 128 29 chr1 67357683 67357855 -214835809 - L1MC/D LINE L1 -2323 5485 5297 2269 103 7 0 chr1 67357862 67358152 -214835512 - AluSq SINE Alu -21 292 1 21 36 0 0 chr1 67359129 67359157 -214834507 + AT_rich Low_complexity Low_complexity 1 28 0 417 266 107 28 chr1 67359492 67359669 -214833995 + MIR SINE MIR 34 224 -38 221 270 14 54 chr1 67359929 67360003 -214833661 - L2 LINE L2 -17 3255 3185 304 359 85 27 chr1 67360063 67360286 -214833378 + L3 LINE CR1 1289 1524 -53 307 316 84 39 chr1 67360523 67360678 -214832986 + MER5B DNA MER1_type 17 178 0 362 317 8 17 chr1 67360528 67360648 -214833016 - MER5A DNA MER1_type -21 168 50 304 321 61 70 chr1 67361744 67362074 -214831590 + L2 LINE L2 2941 3267 -5 392 255 39 35 chr1 67362366 67362487 -214831177 - MER5B DNA MER1_type -71 107 1 1982 155 61 18 chr1 67362960 67363289 -214830375 + MER2 DNA MER2_type 1 343 -1 429 275 93 16 chr1 67363405 67363587 -214830077 + MIR SINE MIR 65 260 -2 497 293 29 67 chr1 67364978 67365186 -214828478 - MIR SINE MIR -34 228 29 590 183 103 32 chr1 67365195 67365321 -214828343 - AluSq/x SINE Alu -176 136 2 195 42 0 0 chr1 67365334 67365358 -214828306 + (T)n Simple_repeat Simple_repeat 1 24 0 4351 29 0 6 chr1 67365489 67365978 -214827686 - L1PA4 LINE L1 -4 6151 5666 4747 33 7 3 chr1 67365978 67366554 -214827110 + L1P LINE L1 4773 5350 -796 180 329 145 0 chr1 67366572 67366648 -214827016 - MIR SINE MIR -83 125 39 387 328 24 18 chr1 67367221 67367361 -214826303 + MIR3 SINE MIR 18 157 -51 185 249 268 14 chr1 67367504 67367610 -214826054 - MIR SINE MIR -78 130 1 24 0 0 0 chr1 67367997 67368021 -214825643 + AT_rich Low_complexity Low_complexity 1 24 0 470 208 239 63 chr1 67368196 67368355 -214825309 - MER5A DNA MER1_type -1 188 2 322 240 60 0 chr1 67368584 67368684 -214824980 - L2 LINE L2 -22 3250 3145 447 383 105 9 chr1 67369246 67369339 -214824325 + L2 LINE L2 2827 2910 -403 1639 194 33 21 chr1 67369339 67369675 -214823989 + MER58B DNA MER1_type 2 341 0 447 383 105 9 chr1 67369675 67370020 -214823644 + L2 LINE L2 2910 3307 -6 322 325 86 18 chr1 67370042 67370205 -214823459 - L2 LINE L2 -684 2630 2457 184 294 73 0 chr1 67370723 67370791 -214822873 - L3b LINE CR1 -225 1358 1286 539 265 88 17 chr1 67371449 67371630 -214822034 + MIR SINE MIR 20 213 -49 440 267 47 47 chr1 67372003 67372175 -214821489 - MIR SINE MIR -18 244 73 989 239 27 19 chr1 67372356 67372465 -214821199 - MIR SINE MIR 0 262 155 186 43 0 0 chr1 67372465 67372488 -214821176 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1795 171 0 4 chr1 67372488 67372769 -214820895 - AluJb SINE Alu -32 280 1 989 239 27 19 chr1 67372769 67372917 -214820747 - MIR SINE MIR -106 156 2 384 261 30 52 chr1 67373031 67373165 -214820499 - L2 LINE L2 -5 3267 3137 419 303 66 38 chr1 67373292 67373579 -214820085 - L2 LINE L2 -353 2961 2667 584 0 0 14 chr1 67373610 67373681 -214819983 - L1PA4 LINE L1 0 6155 6086 429 260 16 16 chr1 67374067 67374190 -214819474 - MIR SINE MIR -127 135 13 996 298 6 46 chr1 67374240 67374586 -214819078 + MER102b DNA MER1_type 5 336 -5 402 247 60 53 chr1 67374702 67374852 -214818812 + L2 LINE L2 2906 3056 -216 21 36 0 0 chr1 67375725 67375753 -214817911 + AT_rich Low_complexity Low_complexity 1 28 0 228 325 36 12 chr1 67375808 67375891 -214817773 - MIR SINE MIR -90 172 88 409 262 8 71 chr1 67376040 67376166 -214817498 + L2 LINE L2 3151 3268 -4 212 318 40 56 chr1 67376718 67376844 -214816820 - L2 LINE L2 0 3272 3149 238 216 54 0 chr1 67376899 67376973 -214816691 - L1MC4a LINE L1 -1 7807 7730 423 293 99 38 chr1 67377181 67377393 -214816271 - MIR SINE MIR -4 258 34 291 54 0 0 chr1 67378510 67378547 -214815117 + (TTA)n Simple_repeat Simple_repeat 2 38 0 282 301 90 23 chr1 67378844 67378977 -214814687 + MIR3 SINE MIR 1 142 -66 221 250 143 12 chr1 67379274 67379358 -214814306 - MIR3 SINE MIR -107 101 7 534 292 36 0 chr1 67379580 67379717 -214813947 - L2 LINE L2 -1 3312 3171 335 254 18 35 chr1 67380515 67380684 -214812980 + T-rich Low_complexity Low_complexity 1 166 0 396 302 78 50 chr1 67381525 67381704 -214811960 - MIR SINE MIR -59 203 20 869 244 19 28 chr1 67381771 67381984 -214811680 - MIR SINE MIR -21 241 31 204 40 0 0 chr1 67382900 67382925 -214810739 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 557 333 12 50 chr1 67382944 67383184 -214810480 - L2 LINE L2 -35 3237 3007 235 114 91 0 chr1 67383201 67383245 -214810419 + MLT2B1 LTR ERVL 473 520 0 280 318 141 34 chr1 67383297 67383738 -214809926 - L2 LINE L2 -809 2505 2018 503 278 98 10 chr1 67384219 67384409 -214809255 - MIR SINE MIR -50 212 11 297 336 133 5 chr1 67385174 67385385 -214808279 - L2 LINE L2 -207 3065 2828 21 36 0 0 chr1 67386285 67386313 -214807351 + AT_rich Low_complexity Low_complexity 1 28 0 857 114 0 0 chr1 67387201 67387315 -214806349 + AluSg SINE Alu 1 114 -196 41829 38 4 4 chr1 67387315 67393472 -214800192 + L1PA3 LINE L1 2 6155 0 1349 134 0 10 chr1 67393476 67393678 -214799986 + AluSc SINE Alu 106 305 -4 189 0 0 0 chr1 67394274 67394295 -214799369 + (T)n Simple_repeat Simple_repeat 1 21 0 266 222 37 0 chr1 67395045 67395099 -214798565 - L2 LINE L2 -8 3305 3250 219 244 0 0 chr1 67395565 67395610 -214798054 - L2 LINE L2 -75 3238 3194 2743 106 0 3 chr1 67395634 67396010 -214797654 - THE1C LTR MaLR 0 375 1 191 246 29 29 chr1 67396307 67396376 -214797288 + L2 LINE L2 3164 3232 -81 1981 128 86 3 chr1 67396550 67396886 -214796778 + THE1B LTR MaLR 1 364 0 297 0 0 0 chr1 67397557 67397590 -214796074 + (CA)n Simple_repeat Simple_repeat 2 34 0 3960 128 48 11 chr1 67397591 67398196 -214795468 - Tigger3(Golem) DNA MER2_type -1 3028 2390 7297 38 6 1 chr1 67398196 67399808 -214793856 - L1PA5 LINE L1 0 6154 4535 3960 128 48 11 chr1 67399808 67399926 -214793738 - Tigger3(Golem) DNA MER2_type -639 2390 2278 655 178 0 0 chr1 67399917 67400024 -214793640 - Tigger3(Golem) DNA MER2_type -2921 108 2 * 432 0 0 0 chr1 67400025 67400073 -214793591 + (TG)n Simple_repeat Simple_repeat 2 49 0 380 299 43 0 chr1 67401422 67401539 -214792125 + MIR SINE MIR 63 184 -78 280 345 41 53 chr1 67401554 67401725 -214791939 + MER5A DNA MER1_type 21 189 0 4196 113 3 3 chr1 67401816 67402426 -214791238 + MER4B LTR ERV1 1 610 0 334 250 83 38 chr1 67403010 67403142 -214790522 + MIR SINE MIR 1 138 -124 344 286 107 22 chr1 67403772 67403950 -214789714 - MIR SINE MIR 0 262 70 2359 172 91 0 chr1 67404409 67404937 -214788727 - L1MC3 LINE L1 -8 7777 7202 284 235 0 47 chr1 67404951 67405036 -214788628 - MLT1F1 LTR MaLR -439 128 48 251 170 0 0 chr1 67405042 67405095 -214788569 - L1MC3 LINE L1 -682 7103 7051 21 57 0 0 chr1 67405260 67405295 -214788369 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 67405981 67406002 -214787662 + AT_rich Low_complexity Low_complexity 1 21 0 272 287 62 65 chr1 67406017 67406292 -214787372 - L1MC4 LINE L1 -10 8032 7759 298 140 0 0 chr1 67407086 67407143 -214786521 - L1MB8 LINE L1 -21 6157 6101 779 210 15 15 chr1 67407160 67407360 -214786304 - L1MB4 LINE L1 -1 6179 5980 1769 123 0 0 chr1 67407361 67407597 -214786067 - AluSg SINE Alu -23 287 52 2355 184 22 49 chr1 67407623 67408215 -214785449 - L1MB4 LINE L1 -176 6004 5429 566 301 44 26 chr1 67408664 67408893 -214784771 - MLT1J LTR MaLR -43 468 236 194 105 26 0 chr1 67409277 67409315 -214784349 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 193 318 24 24 chr1 67410853 67410938 -214782726 + MIR3 SINE MIR 121 205 -3 418 194 73 8 chr1 67412638 67412762 -214780902 + MER69 DNA AcHobo 2383 2514 -12 305 296 254 0 chr1 67412821 67412990 -214780674 + MIR SINE MIR 48 259 -3 416 412 43 38 chr1 67413236 67413656 -214780008 + L2 LINE L2 2832 3253 -19 386 214 19 39 chr1 67413875 67413978 -214779686 + L2 LINE L2 3173 3273 -40 875 266 31 13 chr1 67414034 67414263 -214779401 - MIR SINE MIR -20 242 10 955 201 0 26 chr1 67414391 67414585 -214779079 + MER5A DNA MER1_type 1 189 0 469 289 103 5 chr1 67415031 67415225 -214778439 + MIR SINE MIR 13 225 -37 1955 145 14 7 chr1 67416641 67416931 -214776733 - AluSx SINE Alu -18 294 3 474 191 76 0 chr1 67417469 67417574 -214776090 + MIR SINE MIR 108 220 -42 440 283 52 37 chr1 67417711 67417902 -214775762 - MIR SINE MIR -13 249 56 234 219 229 10 chr1 67417926 67418022 -214775642 + MIR SINE MIR 101 217 -45 207 146 21 21 chr1 67418930 67418978 -214774686 + T-rich Low_complexity Low_complexity 3 50 0 986 176 0 6 chr1 67419167 67419332 -214774332 - AluJb SINE Alu -12 300 137 333 285 45 54 chr1 67419940 67420081 -214773583 - MIR SINE MIR -49 159 11 199 265 31 61 chr1 67420379 67420477 -214773187 + L2 LINE L2 3145 3239 -74 224 245 0 0 chr1 67420880 67420929 -214772735 + L2 LINE L2 3265 3313 0 22 35 0 0 chr1 67421590 67421619 -214772045 + AT_rich Low_complexity Low_complexity 1 29 0 283 370 62 21 chr1 67421887 67422130 -214771534 - L2 LINE L2 -192 3080 2828 791 216 84 11 chr1 67422179 67422369 -214771295 + MIR SINE MIR 28 231 -31 31 26 0 0 chr1 67422375 67422413 -214771251 + AT_rich Low_complexity Low_complexity 1 38 0 1192 137 10 0 chr1 67422570 67422767 -214770897 + L1PA10 LINE L1 5960 6158 -10 2943 206 8 13 chr1 67424504 67425121 -214768543 - MER82 DNA MER2_type 0 653 40 488 299 119 8 chr1 67425423 67425667 -214767997 + LTR33A LTR ERVL 125 395 -128 202 337 0 0 chr1 67426571 67426654 -214767010 + MIR SINE MIR 160 242 -20 216 257 27 14 chr1 67426938 67427012 -214766652 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 217 264 155 47 chr1 67427918 67427994 -214765670 - MIR SINE MIR -30 232 166 198 0 0 0 chr1 67427994 67428016 -214765648 + (TA)n Simple_repeat Simple_repeat 1 22 0 217 264 155 47 chr1 67428016 67428068 -214765596 - MIR SINE MIR -96 166 90 744 264 74 29 chr1 67428198 67428440 -214765224 - MIR SINE MIR -3 259 7 463 276 102 33 chr1 67428674 67428881 -214764783 - MIR SINE MIR -30 232 13 562 248 8 5 chr1 67428925 67429171 -214764493 - MER113 DNA MER1_type? -35 486 211 3675 210 50 4 chr1 67429366 67430293 -214763371 - L1MC4a LINE L1 -91 7717 6749 194 31 0 62 chr1 67431016 67431048 -214762616 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 308 279 226 26 chr1 67431055 67431360 -214762304 - L2 LINE L2 -18 3295 2930 * 346 370 65 48 chr1 67431356 67431710 -214761954 + L2 LINE L2 2853 3212 -60 234 267 33 22 chr1 67431749 67431839 -214761825 + (TGAA)n Simple_repeat Simple_repeat 1 91 0 1844 157 0 11 chr1 67432086 67432367 -214761297 + AluSx SINE Alu 18 295 -17 374 226 220 6 chr1 67432942 67433101 -214760563 - LTR33 LTR ERVL 0 521 329 457 326 14 0 chr1 67433211 67433358 -214760306 - LTR33 LTR ERVL -372 149 1 334 289 139 20 chr1 67433958 67434159 -214759505 + L2 LINE L2 3011 3235 -37 872 170 19 58 chr1 67434597 67434803 -214758861 + MER106A DNA MER1_type 32 229 -7 200 221 65 65 chr1 67434821 67434898 -214758766 - MIR SINE MIR 0 262 186 685 250 43 79 chr1 67435019 67435298 -214758366 - MLT1L LTR MaLR -199 416 148 255 188 42 0 chr1 67435298 67435346 -214758318 - MER3 DNA MER1_type 0 209 160 3915 173 62 30 chr1 67435347 67436208 -214757456 - L1MB7 LINE L1 -16 6168 5281 935 189 0 6 chr1 67436208 67436383 -214757281 - MER3 DNA MER1_type -82 127 1 997 224 9 36 chr1 67436609 67436700 -214756964 - MER58A DNA MER1_type -2196 224 132 1122 162 100 180 chr1 67436700 67437201 -214756463 - MER4C LTR ERV1 -4 461 1 997 224 9 36 chr1 67437201 67437328 -214756336 - MER58A DNA MER1_type -2288 132 12 204 135 0 0 chr1 67437519 67437556 -214756108 + (TGG)n Simple_repeat Simple_repeat 1 37 0 222 301 96 44 chr1 67437567 67437703 -214755961 - L2 LINE L2 -545 2769 2627 641 240 58 46 chr1 67439501 67439826 -214753838 + L1MC5 LINE L1 7452 7780 -181 482 221 0 8 chr1 67439848 67439975 -214753689 + CT-rich Low_complexity Low_complexity 1 126 0 237 275 12 158 chr1 67440492 67440657 -214753007 - MER5A DNA MER1_type -29 149 21 1771 157 13 7 chr1 67440802 67441101 -214752563 + AluJb SINE Alu 1 301 -11 285 299 115 23 chr1 67441209 67441383 -214752281 - MIR SINE MIR -6 256 67 393 300 91 34 chr1 67441850 67442113 -214751551 + L2 LINE L2 2582 2859 -455 2342 101 0 7 chr1 67442655 67442963 -214750701 + AluSc SINE Alu 1 306 -3 349 252 189 0 chr1 67443048 67443159 -214750505 + L2 LINE L2 3141 3272 0 547 335 84 9 chr1 67443349 67443564 -214750100 + MIR SINE MIR 20 250 -12 253 339 23 35 chr1 67444031 67444205 -214749459 + L2 LINE L2 2807 2978 -335 297 264 264 37 chr1 67444953 67445199 -214748465 + L2 LINE L2 3012 3313 0 331 313 12 25 chr1 67446166 67446326 -214747338 + MIR3 SINE MIR 3 160 -48 549 274 7 14 chr1 67446674 67446820 -214746844 - MIR SINE MIR -115 147 3 223 203 47 47 chr1 67446973 67447037 -214746627 + MIR SINE MIR 85 148 -114 199 304 139 0 chr1 67447545 67447624 -214746040 - L2 LINE L2 -1353 1961 1872 277 311 0 22 chr1 67448033 67448123 -214745541 + (CA)n Simple_repeat Simple_repeat 1 88 0 403 199 7 110 chr1 67450105 67450241 -214743423 + MER21B LTR ERV1 1 122 -741 * 2815 207 99 44 chr1 67450219 67450953 -214742711 + MER21B LTR ERV1 20 794 -69 257 308 10 0 chr1 67451074 67451178 -214742486 + (TAG)n Simple_repeat Simple_repeat 3 107 0 285 269 87 48 chr1 67451212 67451316 -214742348 - MIR SINE MIR -149 113 6 222 419 37 7 chr1 67451324 67451460 -214742204 + L2 LINE L2 3096 3235 -37 1258 158 18 31 chr1 67451483 67451705 -214741959 - MER20 DNA MER1_type 0 219 1 309 351 6 36 chr1 67452331 67452496 -214741168 + MIR SINE MIR 56 215 -47 219 237 280 0 chr1 67452567 67452660 -214741004 + L2 LINE L2 3189 3307 -6 1813 157 65 21 chr1 67452906 67453244 -214740420 - MLT1A1 LTR MaLR 0 365 13 538 265 44 22 chr1 67453468 67453649 -214740015 - MIR SINE MIR -3 259 75 451 300 160 18 chr1 67453862 67454116 -214739548 + L2 LINE L2 2822 3038 -234 393 58 0 0 chr1 67454116 67454168 -214739496 + (TG)n Simple_repeat Simple_repeat 2 53 0 451 300 160 18 chr1 67454168 67454306 -214739358 + L2 LINE L2 3038 3270 -2 215 256 44 67 chr1 67454348 67454438 -214739226 - MIR SINE MIR -147 115 28 266 172 31 0 chr1 67454944 67455008 -214738656 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 444 311 87 21 chr1 67456437 67456678 -214736986 - MIR SINE MIR -1 261 5 205 309 119 12 chr1 67457556 67457640 -214736024 + L2 LINE L2 3175 3267 -5 241 350 113 27 chr1 67457829 67458200 -214735464 - L3b LINE CR1 -28 1555 1153 195 355 146 36 chr1 67458958 67459178 -214734486 - L2 LINE L2 -4 3268 3025 269 303 64 28 chr1 67460012 67460121 -214733543 - MIR SINE MIR -58 204 92 192 250 13 53 chr1 67460179 67460255 -214733409 - L3 LINE CR1 -1 1576 1504 330 239 54 62 chr1 67460283 67460413 -214733251 + L2 LINE L2 2954 3082 -190 299 269 39 0 chr1 67460489 67460567 -214733097 + MIR SINE MIR 2 82 -180 342 0 0 0 chr1 67460797 67460835 -214732829 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1400 116 37 0 chr1 67462657 67462873 -214730791 - L1MA5A LINE L1 -1 6296 6073 336 87 0 0 chr1 67462893 67462939 -214730725 + L1MA5A LINE L1 6074 6119 -178 2051 141 3 6 chr1 67462939 67463252 -214730412 + MER1B DNA MER1_type 28 339 0 430 88 44 15 chr1 67463253 67463321 -214730343 - L1MA5A LINE L1 -216 6081 6012 249 237 387 0 chr1 67463424 67463517 -214730147 + L2 LINE L2 3179 3307 -6 559 288 83 35 chr1 67464245 67464474 -214729190 + MIR SINE MIR 8 247 -15 1496 293 110 22 chr1 67465632 67465887 -214727777 - HAL1 LINE L1 -1756 751 520 2315 143 30 28 chr1 67465887 67466250 -214727414 + THE1B LTR MaLR 1 364 0 1496 293 110 22 chr1 67466250 67466684 -214726980 - HAL1 LINE L1 -1987 520 1 213 286 29 67 chr1 67467014 67467119 -214726545 - L2 LINE L2 0 3272 3172 611 186 62 77 chr1 67467530 67467666 -214725998 - L1MDa LINE L1 -3713 2827 2693 2251 95 7 10 chr1 67467666 67467961 -214725703 - AluSg SINE Alu -16 294 1 611 186 62 77 chr1 67467961 67468018 -214725646 - L1MDa LINE L1 -3847 2693 2637 212 0 36 0 chr1 67468025 67468053 -214725611 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1210 230 0 25 chr1 67468074 67468352 -214725312 + AluJo SINE Alu 16 286 -26 245 242 63 11 chr1 67468356 67468451 -214725213 - L1MDa LINE L1 -3899 2641 2542 2914 66 20 27 chr1 67468552 67468961 -214724703 - L1P4 LINE L1 -382 5786 5381 1647 190 80 20 chr1 67469639 67469991 -214723673 + THE1C LTR MaLR 3 375 0 338 320 40 24 chr1 67470236 67470361 -214723303 - L2 LINE L2 -2 3270 3144 200 259 12 0 chr1 67470721 67470802 -214722862 + (TA)n Simple_repeat Simple_repeat 2 83 0 569 248 99 94 chr1 67470905 67471478 -214722186 - HAL1 LINE L1 -789 1718 1143 973 306 68 37 chr1 67472657 67473085 -214720579 - MLT1H LTR MaLR -10 539 99 217 314 31 92 chr1 67473267 67473496 -214720168 - L2 LINE L2 -189 3083 2869 191 304 0 0 chr1 67475270 67475316 -214718348 - L2 LINE L2 -24 3248 3203 627 341 24 4 chr1 67475339 67475588 -214718076 - MIR SINE MIR -5 257 4 398 314 36 0 chr1 67476071 67476208 -214717456 + MIR3 SINE MIR 37 178 -30 348 286 53 30 chr1 67476406 67476539 -214717125 + MIR SINE MIR 6 141 -121 452 49 37 12 chr1 67476968 67477049 -214716615 + (TA)n Simple_repeat Simple_repeat 2 84 0 36 40 0 0 chr1 67477049 67477099 -214716565 + AT_rich Low_complexity Low_complexity 1 50 0 4381 171 80 36 chr1 67477161 67478040 -214715624 + MER21A LTR ERV1 15 931 0 367 327 9 0 chr1 67478622 67478732 -214714932 + L2 LINE L2 3187 3297 -16 25419 43 50 2 chr1 67478894 67482084 -214711580 - L1P LINE L1 -2800 3346 3 497 293 83 8 chr1 67482090 67482343 -214711321 - L1M4 LINE L1 -1780 4366 4095 451 237 82 65 chr1 67482358 67482590 -214711074 - L1M4 LINE L1 -2098 4048 3813 360 266 45 69 chr1 67482589 67482975 -214710689 - L1ME LINE L1 -4910 1160 784 * 376 285 7 76 chr1 67483801 67483883 -214709781 - MIR SINE MIR -112 150 81 2282 81 0 10 chr1 67483883 67484180 -214709484 - AluY SINE Alu -17 294 1 376 285 7 76 chr1 67484180 67484241 -214709423 - MIR SINE MIR -181 81 17 238 276 57 49 chr1 67485637 67485760 -214707904 + L3 LINE CR1 288 411 -1166 850 289 25 0 chr1 67486586 67486825 -214706839 - MER46C DNA MER2_type -14 324 80 247 271 42 10 chr1 67486883 67486979 -214706685 + L2 LINE L2 2890 2988 -284 285 279 172 25 chr1 67487097 67487219 -214706445 - MIR SINE MIR -117 145 6 261 330 31 0 chr1 67487696 67487793 -214705871 - MIR SINE MIR -1 261 162 319 300 0 0 chr1 67488410 67488480 -214705184 - MIR SINE MIR -137 125 56 437 234 38 63 chr1 67488663 67488821 -214704843 - MER5A DNA MER1_type 0 189 36 256 342 81 0 chr1 67488837 67488948 -214704716 + L2 LINE L2 3149 3268 -4 208 258 161 32 chr1 67489948 67490072 -214703592 - L2 LINE L2 -49 3264 3125 1381 239 38 38 chr1 67490072 67490495 -214703169 + L1ME3A LINE L1 5525 5947 -223 305 339 88 47 chr1 67490938 67491322 -214702342 - L2 LINE L2 -410 2904 2505 1687 177 66 21 chr1 67491581 67491960 -214701704 + L1MC4 LINE L1 7438 7833 -209 262 324 66 58 chr1 67492377 67492793 -214700871 - L2 LINE L2 -227 3045 2629 229 368 43 30 chr1 67492839 67493070 -214700594 - L2 LINE L2 -211 3061 2828 664 226 85 74 chr1 67493159 67493536 -214700128 - L1MC5 LINE L1 -31 7930 7550 2289 103 3 0 chr1 67493545 67493846 -214699818 - AluSx SINE Alu -10 302 1 1545 178 10 30 chr1 67494428 67494731 -214698933 + AluJb SINE Alu 2 298 -14 328 233 153 43 chr1 67495005 67495168 -214698496 - MIR SINE MIR -29 233 53 291 349 55 0 chr1 67495348 67495457 -214698207 + L2 LINE L2 3121 3235 -37 31032 73 6 167 chr1 67497196 67498869 -214694795 + L1PA6 LINE L1 193 2133 -4021 261 0 0 0 chr1 67498869 67498898 -214694766 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 31032 73 6 167 chr1 67498898 67498929 -214694735 + L1PA6 LINE L1 2133 2167 -3987 2514 39 0 0 chr1 67498929 67499209 -214694455 - L1PA3 LINE L1 -5 6150 5871 31032 73 6 167 chr1 67499209 67504600 -214689064 + L1PA6 LINE L1 2167 6151 -3 185 316 163 32 chr1 67504600 67504790 -214688874 + L2 LINE L2 1666 1880 -1434 190 281 0 18 chr1 67504858 67504915 -214688749 + L2 LINE L2 3258 3313 0 2097 121 3 0 chr1 67504969 67505295 -214688369 - AluSp SINE Alu 0 313 1 2345 102 0 0 chr1 67505678 67505981 -214687683 + AluY SINE Alu 1 303 -8 1048 207 108 71 chr1 67506297 67506620 -214687044 - MSTD LTR MaLR -1 395 61 15116 65 5 1 chr1 67506725 67509433 -214684231 + L1PA3 LINE L1 3463 6152 -3 2135 268 99 40 chr1 67509458 67511122 -214682542 + L1ME3A LINE L1 4383 6170 0 201 74 0 0 chr1 67511475 67511502 -214682162 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 624 273 93 19 chr1 67512206 67512411 -214681253 + MIR SINE MIR 6 225 -37 368 276 29 71 chr1 67512607 67512777 -214680887 + L2 LINE L2 3106 3268 -4 2392 84 13 0 chr1 67512871 67513180 -214680484 - AluSp SINE Alu 0 313 1 209 304 155 8 chr1 67513194 67513323 -214680341 - MIR3 SINE MIR -67 141 7 1143 243 54 46 chr1 67514505 67514960 -214678704 - MER39 LTR ERV1 0 686 257 368 312 34 99 chr1 67515479 67515742 -214677922 + L2 LINE L2 3027 3272 0 22 35 0 0 chr1 67515845 67515874 -214677790 + AT_rich Low_complexity Low_complexity 1 29 0 523 286 143 0 chr1 67516665 67516826 -214676838 - MIR SINE MIR -70 192 9 243 0 0 0 chr1 67516985 67517012 -214676652 + (ATG)n Simple_repeat Simple_repeat 2 28 0 2081 65 28 58 chr1 67517012 67517323 -214676341 - AluY SINE Alu 0 304 3 2240 120 0 0 chr1 67517431 67517731 -214675933 - AluSg SINE Alu -10 300 1 336 261 109 95 chr1 67517940 67518151 -214675513 + MIR SINE MIR 34 247 -15 222 37 0 0 chr1 67518372 67518399 -214675265 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 192 279 79 114 chr1 67518623 67518763 -214674901 - L2 LINE L2 -219 3053 2919 373 255 39 20 chr1 67518893 67518995 -214674669 - MIR SINE MIR -70 192 89 230 234 0 0 chr1 67519037 67519084 -214674580 + (CAA)n Simple_repeat Simple_repeat 2 48 0 314 231 85 77 chr1 67519095 67519114 -214674550 - MIR SINE MIR -33 229 212 1018 182 61 5 chr1 67519114 67519312 -214674352 - MER3 DNA MER1_type 0 209 1 314 231 85 77 chr1 67519312 67519422 -214674242 - MIR SINE MIR -50 212 99 334 303 45 45 chr1 67519912 67520067 -214673597 + MIR SINE MIR 41 195 -67 285 270 0 0 chr1 67520496 67520559 -214673105 - L2 LINE L2 -9 3263 3201 193 218 55 18 chr1 67520669 67520724 -214672940 - MIR SINE MIR -134 74 18 629 294 28 24 chr1 67520804 67521015 -214672649 + MIR SINE MIR 20 231 -31 279 175 0 0 chr1 67521078 67521135 -214672529 + (ATGGTG)n Simple_repeat Simple_repeat 6 62 0 676 291 81 9 chr1 67521624 67521847 -214671817 + MIR SINE MIR 12 250 -12 607 258 60 36 chr1 67521903 67522151 -214671513 - LTR33A LTR ERVL -1 522 269 220 325 126 26 chr1 67522657 67522808 -214670856 + L2 LINE L2 3045 3210 -62 304 241 0 11 chr1 67523036 67523123 -214670541 - L2 LINE L2 -273 2999 2914 6122 115 198 91 chr1 67524088 67525620 -214668044 + pTR5 LTR ERV1 743 2438 0 247 291 82 60 chr1 67525622 67525804 -214667860 - L2 LINE L2 -274 2998 2813 754 258 36 5 chr1 67526450 67526644 -214667020 - MIR3 SINE MIR -7 201 2 298 326 150 44 chr1 67526921 67527148 -214666516 + MIR SINE MIR 12 262 0 1627 295 78 18 chr1 67527691 67528406 -214665258 + L2 LINE L2 2394 3149 -164 635 207 47 22 chr1 67528418 67528600 -214665064 - MIR SINE MIR -47 215 27 200 408 77 0 chr1 67528617 67528747 -214664917 + L3 LINE CR1 983 1122 -455 489 285 19 44 chr1 67530105 67530263 -214663401 + MIR SINE MIR 20 173 -89 315 206 0 0 chr1 67530622 67530685 -214662979 + L2 LINE L2 3251 3313 0 469 282 290 6 chr1 67530752 67531100 -214662564 - L2 LINE L2 -974 2340 1894 348 270 172 40 chr1 67531168 67531342 -214662322 - MIR SINE MIR -37 225 29 660 304 104 65 chr1 67531348 67531995 -214661669 - L2 LINE L2 -1497 1817 1146 561 315 53 45 chr1 67532054 67532432 -214661232 + L2 LINE L2 2461 2841 -473 390 314 52 41 chr1 67532505 67532776 -214660888 - MLT1J LTR MaLR -230 281 8 354 197 42 72 chr1 67533087 67533280 -214660384 + Charlie7 DNA MER1_type 2426 2612 0 333 285 127 51 chr1 67533392 67533550 -214660114 - MIR3 SINE MIR -7 201 32 450 169 0 0 chr1 67534683 67534772 -214658892 + (TG)n Simple_repeat Simple_repeat 2 90 0 21 0 0 0 chr1 67534772 67534793 -214658871 + AT_rich Low_complexity Low_complexity 1 21 0 423 291 121 0 chr1 67534798 67534939 -214658725 - MIR SINE MIR -44 218 61 302 181 43 64 chr1 67534999 67535052 -214658612 + MIR3 SINE MIR 102 154 -54 587 238 111 12 chr1 67535052 67535224 -214658440 - MER5A DNA MER1_type 0 189 1 302 181 43 64 chr1 67535224 67535264 -214658400 + MIR3 SINE MIR 154 193 -15 299 313 78 16 chr1 67535430 67535558 -214658106 - L2 LINE L2 0 3272 3137 857 273 24 20 chr1 67536106 67536355 -214657309 - MIR SINE MIR -1 261 12 637 254 130 73 chr1 67537316 67537793 -214655871 + MLT1J LTR MaLR 6 509 -2 673 206 160 27 chr1 67537848 67538067 -214655597 - MIR SINE MIR -5 257 10 209 301 65 45 chr1 67538662 67538861 -214654803 + L2 LINE L2 2851 3053 -219 265 330 97 10 chr1 67539131 67539234 -214654430 - MER91C DNA MER1_type -23 117 6 388 277 88 31 chr1 67539473 67539632 -214654032 + L2 LINE L2 3112 3279 -34 339 288 83 29 chr1 67540170 67540483 -214653181 - L1ME4a LINE L1 -193 5928 5599 316 244 218 19 chr1 67540490 67540646 -214653018 - L1ME4a LINE L1 0 6121 5935 248 97 65 0 chr1 67540647 67540709 -214652955 + (TA)n Simple_repeat Simple_repeat 1 66 0 496 256 115 0 chr1 67540861 67541052 -214652612 - L1ME4a LINE L1 -374 5747 5535 255 304 18 0 chr1 67541069 67541181 -214652483 - L1ME4a LINE L1 -667 5454 5341 5781 126 25 33 chr1 67541231 67542194 -214651470 - L1MA5A LINE L1 0 6297 5334 1555 177 32 28 chr1 67542194 67542476 -214651188 - AluJo SINE Alu -19 293 11 5781 126 25 33 chr1 67542476 67542726 -214650938 - L1MA5A LINE L1 -963 5334 5084 262 197 56 28 chr1 67542847 67542918 -214650746 + L1MC4 LINE L1 7844 7916 -126 189 213 0 0 chr1 67542928 67542975 -214650689 + (TA)n Simple_repeat Simple_repeat 1 47 0 304 202 67 19 chr1 67542998 67543102 -214650562 + L1MC4a LINE L1 7699 7807 -1 1639 217 62 58 chr1 67543518 67544021 -214649643 - MLT1D LTR MaLR 0 505 1 3919 154 36 6 chr1 67544457 67545185 -214648479 - L1MA7 LINE L1 -1 6290 5541 213 205 0 0 chr1 67545331 67545370 -214648294 - L2 LINE L2 -253 3060 3022 348 288 47 65 chr1 67545423 67545564 -214648100 - L1ME4a LINE L1 -1913 4233 4096 3893 54 0 2 chr1 67545564 67546049 -214647615 + L1PA8 LINE L1 5682 6165 -7 348 288 47 65 chr1 67546049 67546122 -214647542 - L1ME4a LINE L1 -2050 4096 4023 348 88 0 0 chr1 67546129 67546186 -214647478 + (CA)n Simple_repeat Simple_repeat 2 58 0 238 254 119 0 chr1 67546301 67546360 -214647304 + L2 LINE L2 3142 3207 -65 320 273 91 9 chr1 67546362 67546472 -214647192 + L2 LINE L2 3154 3272 0 188 67 33 0 chr1 67547110 67547140 -214646524 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 2607 143 42 2 chr1 67547140 67547685 -214645979 - L1 LINE L1 -1446 4700 4134 1858 289 40 38 chr1 67548145 67549011 -214644653 - HAL1 LINE L1 -1560 947 80 3932 168 9 12 chr1 67549014 67549055 -214644609 + L1MB3 LINE L1 5445 5485 -698 279 0 0 0 chr1 67549055 67549086 -214644578 + (CA)n Simple_repeat Simple_repeat 2 32 0 3932 168 9 12 chr1 67549086 67549784 -214643880 + L1MB3 LINE L1 5485 6182 -1 224 298 85 0 chr1 67549889 67549983 -214643681 - MIR SINE MIR -107 155 54 565 305 83 19 chr1 67550208 67550567 -214643097 - L2 LINE L2 -224 3089 2709 2311 138 47 19 chr1 67550774 67551476 -214642188 - L1P4 LINE L1 -484 5681 4968 3349 167 6 9 chr1 67551529 67552199 -214641465 - L1P LINE L1 -1082 5064 4397 3082 126 0 0 chr1 67552200 67552683 -214640981 + L1PA15 LINE L1 5708 6190 0 365 215 84 0 chr1 67552746 67552853 -214640811 - MER103 DNA DNA -39 127 12 358 319 51 51 chr1 67552892 67553127 -214640537 - L2 LINE L2 -111 3161 2927 2094 90 4 4 chr1 67553268 67553569 -214640095 + AluSx SINE Alu 5 305 0 2187 123 0 0 chr1 67555252 67555544 -214638120 + AluSx SINE Alu 1 292 -20 315 183 87 19 chr1 67555556 67555660 -214638004 - L1ME4a LINE L1 -35 6086 5976 2082 134 26 62 chr1 67555718 67556136 -214637528 - MER57A LTR ERV1 0 403 1 2150 96 6 56 chr1 67556244 67556568 -214637096 - AluSq SINE Alu -5 308 1 285 265 109 27 chr1 67557549 67557867 -214635797 - LTR16A LTR ERVL 0 450 79 298 317 80 55 chr1 67557997 67558309 -214635355 + L2 LINE L2 2561 2880 -434 198 103 0 0 chr1 67558752 67558781 -214634883 + (T)n Simple_repeat Simple_repeat 1 29 0 396 272 19 76 chr1 67558957 67559115 -214634549 + MIR SINE MIR 100 248 -14 1638 153 91 0 chr1 67559311 67559664 -214634000 - Charlie5 DNA MER1_type 0 2618 2234 589 183 17 0 chr1 67559673 67559788 -214633876 - Charlie5 DNA MER1_type -2491 121 5 244 247 26 52 chr1 67560400 67560477 -214633187 - MER91C DNA MER1_type -30 110 36 22 35 0 0 chr1 67561347 67561376 -214632288 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 67561530 67561551 -214632113 + AT_rich Low_complexity Low_complexity 1 21 0 279 283 97 41 chr1 67561634 67561779 -214631885 - L2 LINE L2 0 3313 3161 406 229 13 78 chr1 67561941 67562094 -214631570 - MER112 DNA MER1_type -45 215 73 467 341 51 65 chr1 67562126 67562481 -214631183 + L2 LINE L2 2919 3268 -4 308 281 10 31 chr1 67562627 67562723 -214630941 + L2 LINE L2 3176 3269 -3 2724 82 6 0 chr1 67563273 67563626 -214630038 + THE1A LTR MaLR 1 355 0 561 111 0 0 chr1 67563626 67563707 -214629957 + THE1A-int LTR MaLR 1 81 -1499 * 792 90 0 0 chr1 67563701 67563812 -214629852 + THE1A-int LTR MaLR 1417 1527 -53 * 3078 86 11 2 chr1 67563805 67564247 -214629417 + THE1A-int LTR MaLR 1134 1579 -1 2315 123 20 3 chr1 67564248 67564597 -214629067 + THE1A LTR MaLR 1 355 0 299 236 11 34 chr1 67565011 67565100 -214628564 - L2 LINE L2 -10 3303 3217 226 268 0 0 chr1 67567417 67567458 -214626206 - L2 LINE L2 -22 3250 3210 601 281 60 10 chr1 67567491 67567690 -214625974 + MIR SINE MIR 35 243 -19 184 157 71 100 chr1 67567740 67567810 -214625854 - L2 LINE L2 -201 3071 3004 2225 90 3 3 chr1 67567885 67568173 -214625491 + AluSq SINE Alu 1 288 -25 335 339 16 31 chr1 67568562 67568689 -214624975 - MIR SINE MIR -118 144 20 424 276 126 50 chr1 67568727 67568966 -214624698 + MIR SINE MIR 6 262 0 581 275 70 10 chr1 67570192 67570392 -214623272 + MIR SINE MIR 49 260 -2 349 118 0 0 chr1 67570413 67570464 -214623200 + L1MC3 LINE L1 6509 6559 -1226 4648 63 11 3 chr1 67570464 67571580 -214622084 - MER11A LTR ERVK 0 1266 1 4376 143 117 82 chr1 67571580 67572116 -214621548 + L1MC3 LINE L1 6554 7070 -715 296 256 0 12 chr1 67572116 67572198 -214621466 + MLT1F1 LTR MaLR 45 125 -442 4376 143 117 82 chr1 67572198 67572769 -214620895 + L1MC3 LINE L1 7070 7784 -1 487 286 117 14 chr1 67573767 67573980 -214619684 - MIR SINE MIR -8 254 20 1459 192 177 43 chr1 67574026 67574541 -214619123 + L1ME1 LINE L1 5302 5885 -281 406 177 89 0 chr1 67574721 67574800 -214618864 - L1ME LINE L1 -524 5640 5555 382 266 64 73 chr1 67574830 67575063 -214618601 + L1ME1 LINE L1 5908 6138 -28 * 448 213 107 0 chr1 67574945 67575095 -214618569 + L1MA10 LINE L1 6167 6332 -2 2980 116 0 0 chr1 67575105 67575564 -214618100 - L1P LINE L1 -1835 4311 3853 * 6091 92 10 0 chr1 67575561 67576466 -214617198 + L1P LINE L1 4336 5249 -897 853 185 162 0 chr1 67576722 67576938 -214616726 + L1ME LINE L1 5387 5637 -529 2515 4 0 0 chr1 67577735 67578006 -214615658 - AluYa5 SINE Alu -2 309 39 477 297 125 31 chr1 67578031 67578287 -214615377 + L2 LINE L2 2993 3272 0 2830 114 17 0 chr1 67578950 67579371 -214614293 + MSTA LTR MaLR 1 428 0 280 323 115 0 chr1 67579512 67579642 -214614022 - MIR SINE MIR -72 190 46 411 347 110 5 chr1 67580150 67580369 -214613295 - MIR SINE MIR -1 261 20 1204 173 0 35 chr1 67580379 67580605 -214613059 + MER20 DNA MER1_type 1 218 -1 186 318 48 0 chr1 67581045 67581108 -214612556 + L2 LINE L2 3188 3253 -19 24 67 0 0 chr1 67581113 67581158 -214612506 + AT_rich Low_complexity Low_complexity 1 45 0 445 320 57 49 chr1 67582064 67582260 -214611404 - MIR3 SINE MIR -9 199 1 339 293 154 24 chr1 67582546 67582754 -214610910 - MIR SINE MIR -7 255 21 233 182 0 0 chr1 67582902 67582946 -214610718 - MIR SINE MIR -66 142 99 248 362 16 16 chr1 67583182 67583309 -214610355 - MIR SINE MIR -86 176 50 6863 202 124 42 chr1 67584353 67585976 -214607688 + MER52A LTR ERV1 1 1755 0 488 212 80 0 chr1 67585979 67586092 -214607572 + MIR SINE MIR 111 232 -30 360 314 38 0 chr1 67586209 67586314 -214607350 - L2 LINE L2 -31 3282 3174 489 253 16 33 chr1 67586326 67586508 -214607156 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 445 326 0 17 chr1 67586474 67586652 -214607012 + (TG)n Simple_repeat Simple_repeat 2 176 0 * 192 179 0 0 chr1 67586667 67586706 -214606958 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 400 310 48 7 chr1 67586905 67587050 -214606614 - L2 LINE L2 0 3272 3122 535 238 265 11 chr1 67587328 67587517 -214606147 + MIR SINE MIR 23 259 -3 417 270 40 26 chr1 67588464 67588616 -214605048 - MER5A DNA MER1_type 0 189 36 244 258 101 11 chr1 67588900 67588989 -214604675 - MIR SINE MIR -93 115 19 196 272 120 64 chr1 67589542 67589667 -214603997 + L2 LINE L2 3138 3269 -3 192 154 77 0 chr1 67589893 67589932 -214603732 - MIR SINE MIR -158 104 63 352 282 89 24 chr1 67590889 67591013 -214602651 - L2 LINE L2 -5 3267 3136 294 321 64 9 chr1 67591664 67591773 -214601891 + MIR SINE MIR 16 130 -78 2218 108 3 3 chr1 67592106 67592412 -214601252 + AluSx SINE Alu 1 306 -6 410 225 246 0 chr1 67592934 67593072 -214600592 - MIR SINE MIR -12 250 79 423 296 40 0 chr1 67593202 67593325 -214600339 + MER5A DNA MER1_type 38 165 -24 646 204 88 14 chr1 67593325 67593472 -214600192 - MER5A DNA MER1_type 0 189 32 655 180 0 0 chr1 67594004 67594104 -214599560 - Tigger7 DNA MER2_type -1 2490 2391 1617 202 0 0 chr1 67594113 67594380 -214599284 - Tigger7 DNA MER2_type -2220 267 1 189 241 0 0 chr1 67594704 67594758 -214598906 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 220 288 41 0 chr1 67595198 67595271 -214598393 + L2 LINE L2 3236 3311 -2 200 266 62 78 chr1 67595327 67595455 -214598209 - MIR3 SINE MIR -80 128 3 650 301 105 67 chr1 67595735 67596382 -214597282 + L2 LINE L2 1146 1817 -1497 349 266 107 73 chr1 67596383 67596560 -214597104 + MIR SINE MIR 43 225 -37 429 279 294 6 chr1 67596628 67596975 -214596689 + L2 LINE L2 1894 2340 -974 301 222 0 0 chr1 67597042 67597105 -214596559 - L2 LINE L2 0 3313 3251 26326 38 10 8 chr1 67597937 67601341 -214592323 - L1P2 LINE L1 -592 5562 2153 2404 275 143 28 chr1 67602747 67604260 -214589404 + L2 LINE L2 1606 3308 -5 236 291 63 0 chr1 67605450 67605529 -214588135 + L2 LINE L2 3139 3222 -50 332 285 258 0 chr1 67605601 67605752 -214587912 - MIR SINE MIR -11 251 62 906 155 111 17 chr1 67605944 67606125 -214587539 + AluJo SINE Alu 21 218 -94 18968 53 8 3 chr1 67606279 67608638 -214585026 - L1P LINE L1 -3772 2374 3 497 293 83 8 chr1 67608644 67608897 -214584767 - L1M4 LINE L1 -1780 4366 4095 267 278 248 8 chr1 67609251 67609384 -214584280 + L2 LINE L2 3099 3263 -9 355 268 232 25 chr1 67610600 67610814 -214582850 + MIR SINE MIR 1 256 -6 2232 119 0 3 chr1 67610950 67611261 -214582403 + AluSg SINE Alu 1 310 0 210 257 24 14 chr1 67662194 67662278 -214531386 - MIR SINE MIR -59 149 64 652 242 23 51 chr1 67663177 67663392 -214530272 + MIR SINE MIR 37 245 -17 207 239 22 0 chr1 67664254 67664300 -214529364 + MIR SINE MIR 33 79 -183 350 0 44 0 chr1 67664687 67664732 -214528932 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 185 356 33 0 chr1 67665064 67665154 -214528510 + L2 LINE L2 2437 2529 -785 346 89 0 0 chr1 67665405 67665461 -214528203 - L1PB1 LINE L1 0 6151 6096 1699 158 7 7 chr1 67665461 67665740 -214527924 - AluJb SINE Alu -21 291 13 247 224 0 0 chr1 67666623 67666672 -214526992 + MIR SINE MIR 28 76 -132 250 298 96 23 chr1 67666771 67666989 -214526675 - MIR SINE MIR -5 257 24 2250 108 50 42 chr1 67667174 67667535 -214526129 + THE1B LTR MaLR 1 364 0 11952 95 4 1 chr1 67667535 67669110 -214524554 + THE1B-int LTR MaLR 1 1580 0 648 103 155 0 chr1 67669110 67669207 -214524457 + THE1B LTR MaLR 1 112 -252 255 298 21 11 chr1 67669207 67669301 -214524363 - MIR SINE MIR -78 130 36 242 232 136 40 chr1 67669980 67670105 -214523559 - MIR SINE MIR -43 219 83 290 269 27 107 chr1 67670889 67671038 -214522626 - L2 LINE L2 0 3272 3136 219 170 0 0 chr1 67671310 67671357 -214522307 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 1428 181 101 24 chr1 67671388 67671726 -214521938 - THE1B LTR MaLR 0 364 1 207 264 83 0 chr1 67672085 67672157 -214521507 + MIR SINE MIR 22 99 -109 306 227 52 21 chr1 67672536 67672633 -214521031 + MIR SINE MIR 163 262 0 466 257 126 45 chr1 67672758 67672980 -214520684 - MIR SINE MIR -13 249 10 336 272 80 12 chr1 67674032 67674194 -214519470 - L1MC4a LINE L1 -1925 5883 5711 384 288 110 38 chr1 67674341 67674690 -214518974 - L1MC4a LINE L1 -787 5359 5245 311 273 104 39 chr1 67675131 67675285 -214518379 + MIR SINE MIR 22 185 -77 698 269 94 9 chr1 67675751 67675974 -214517690 + MIR SINE MIR 2 243 -19 304 340 64 0 chr1 67676005 67676146 -214517518 + MIR SINE MIR 56 205 -57 351 255 209 0 chr1 67676274 67676427 -214517237 + MIR SINE MIR 78 262 0 525 296 25 13 chr1 67676693 67676852 -214516812 - MIR SINE MIR -70 192 32 367 300 100 13 chr1 67677468 67677618 -214516046 - MIR3 SINE MIR -15 193 31 278 333 17 8 chr1 67678130 67678250 -214515414 - MIR SINE MIR -94 168 48 1210 123 64 64 chr1 67678273 67678508 -214515156 + MER46A DNA MER2_type 1 235 -1 183 205 0 0 chr1 67678577 67678616 -214515048 + (CA)n Simple_repeat Simple_repeat 1 39 0 1858 163 52 25 chr1 67678626 67678989 -214514675 - THE1C LTR MaLR 0 375 3 315 0 0 0 chr1 67678989 67679024 -214514640 + (CA)n Simple_repeat Simple_repeat 1 35 0 302 88 0 206 chr1 67679233 67679301 -214514363 - MER45A DNA AcHobo 0 178 125 436 271 44 71 chr1 67679615 67679720 -214513944 - MER45C DNA AcHobo -732 221 115 6717 75 11 1 chr1 67679720 67680973 -214512691 + L1PA7 LINE L1 4892 6153 -1 436 271 44 71 chr1 67680973 67681062 -214512602 - MER45C DNA AcHobo -838 115 25 1954 130 98 21 chr1 67681062 67681400 -214512264 - THE1B LTR MaLR 0 364 1 11735 88 25 0 chr1 67681400 67682940 -214510724 - THE1B-int LTR MaLR 0 1580 2 436 271 44 71 chr1 67682940 67682968 -214510696 - MER45C DNA AcHobo -926 27 3 311 240 115 31 chr1 67683583 67683679 -214509985 - MER94 DNA DNA -1 133 30 257 286 0 0 chr1 67684230 67684286 -214509378 + polypurine Low_complexity Low_complexity 5 60 0 350 335 32 32 chr1 67685060 67685218 -214508446 + MIR SINE MIR 13 170 -92 407 239 37 28 chr1 67685230 67685339 -214508325 - MIR SINE MIR -1 261 152 1155 219 0 5 chr1 67685343 67685558 -214508106 + MER58A DNA MER1_type 3 216 -8 378 305 13 65 chr1 67685568 67685722 -214507942 - MIR SINE MIR -112 150 5 238 269 30 30 chr1 67685724 67685791 -214507873 + MIR SINE MIR 194 260 -2 274 170 57 0 chr1 67685924 67685977 -214507687 - MIR SINE MIR -85 177 122 220 322 100 11 chr1 67686564 67686654 -214507010 - MIR SINE MIR -53 209 112 943 242 8 49 chr1 67687346 67687590 -214506074 - MIR SINE MIR -18 244 11 289 300 28 45 chr1 67687615 67687777 -214505887 - MIR3 SINE MIR -67 141 3 713 306 16 4 chr1 67688809 67689067 -214504597 + MIR SINE MIR 1 261 -1 21 0 0 0 chr1 67689071 67689092 -214504572 + AT_rich Low_complexity Low_complexity 1 21 0 235 288 17 0 chr1 67689132 67689191 -214504473 - L2 LINE L2 -2 3270 3211 498 282 21 21 chr1 67689234 67689376 -214504288 - MIR SINE MIR -16 246 105 755 324 31 19 chr1 67690356 67690716 -214502948 + L2 LINE L2 2782 3145 -168 183 80 0 0 chr1 67690833 67690858 -214502806 + (CCCCCT)n Simple_repeat Simple_repeat 1 25 0 * 254 224 0 26 chr1 67690856 67690932 -214502732 + T-rich Low_complexity Low_complexity 3 76 0 543 202 0 0 chr1 67690949 67691073 -214502591 + C-rich Low_complexity Low_complexity 1 124 0 6657 164 53 64 chr1 67691222 67692047 -214501617 - L1MC3 LINE L1 -167 7618 6785 192 40 0 0 chr1 67692047 67692072 -214501592 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 2293 65 7 4 chr1 67692078 67692356 -214501308 - AluY SINE Alu -32 279 1 6657 164 53 64 chr1 67692356 67693118 -214500546 - L1MC3 LINE L1 -1005 6780 6042 351 187 4 7 chr1 67693123 67693197 -214500467 + Alu SINE Alu 3 56 -252 1324 107 0 0 chr1 67693356 67693534 -214500130 + AluY SINE Alu 119 296 -15 492 239 0 8 chr1 67693535 67693652 -214500012 - L1MC2 LINE L1 -316 6446 6331 4684 248 56 57 chr1 67693652 67696063 -214497601 - L1MC2 LINE L1 -743 5821 3529 3521 141 9 2 chr1 67696074 67696640 -214497024 - L1PA16 LINE L1 -9 6157 5588 1608 159 37 0 chr1 67696651 67696972 -214496692 + L1 LINE L1 4402 4734 -1412 3444 224 82 17 chr1 67697008 67698368 -214495296 - L1MC2 LINE L1 -3917 2828 1557 249 33 0 0 chr1 67698368 67698398 -214495266 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3444 224 82 17 chr1 67698398 67699507 -214494157 - L1MC2 LINE L1 -5188 1557 33 427 314 8 16 chr1 67699594 67699715 -214493949 + L2 LINE L2 3184 3303 -10 182 264 57 19 chr1 67699738 67699791 -214493873 - L2 LINE L2 -21 3292 3238 273 315 76 0 chr1 67700895 67700987 -214492677 + MIR SINE MIR 45 143 -65 563 247 127 62 chr1 67701202 67701477 -214492187 + LTR33 LTR ERVL 104 396 -125 725 241 65 10 chr1 67701761 67701960 -214491704 - MER63A DNA MER1_type 0 210 1 1276 173 76 0 chr1 67702147 67702448 -214491216 + MER33 DNA MER1_type 1 324 0 342 120 13 13 chr1 67702465 67702529 -214491135 + AluJo SINE Alu 1 46 -255 * 2117 97 118 13 chr1 67702525 67702897 -214490767 + MSTA LTR MaLR 7 417 -11 450 223 10 29 chr1 67702897 67703000 -214490664 + AluJo SINE Alu 44 144 -168 2078 93 45 10 chr1 67703000 67703289 -214490375 + AluY SINE Alu 1 299 -12 935 186 6 0 chr1 67703289 67703450 -214490214 + AluJo SINE Alu 137 298 -4 1126 332 166 28 chr1 67703451 67704786 -214488878 + L2 LINE L2 1721 3258 -14 349 351 66 40 chr1 67704802 67704953 -214488711 - MIR3 SINE MIR -42 166 12 570 270 87 66 chr1 67705396 67705562 -214488102 - MIR SINE MIR 0 262 88 2333 86 0 0 chr1 67705562 67705852 -214487812 - AluSx SINE Alu -22 290 1 570 270 87 66 chr1 67705852 67705926 -214487738 - MIR SINE MIR -174 88 17 222 128 0 0 chr1 67706037 67706076 -214487588 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 197 303 126 50 chr1 67706129 67706248 -214487416 - L2 LINE L2 -63 3209 3082 249 247 11 97 chr1 67707783 67707830 -214485834 - MIR SINE MIR -72 190 153 1694 170 10 27 chr1 67707830 67708124 -214485540 - AluJb SINE Alu -23 289 1 249 247 11 97 chr1 67708124 67708169 -214485495 - MIR SINE MIR -109 153 106 211 261 22 0 chr1 67708313 67708359 -214485305 + MIR SINE MIR 216 262 0 594 221 8 8 chr1 67708882 67709009 -214484655 - MIR3 SINE MIR -4 204 78 564 233 145 6 chr1 67709271 67709443 -214484221 + MIR SINE MIR 53 248 -14 559 338 50 53 chr1 67709476 67710003 -214483661 - L2 LINE L2 -52 3261 2740 347 177 16 0 chr1 67710013 67710075 -214483589 + MER21B LTR ERV1 13 75 -788 193 349 15 0 chr1 67710075 67710141 -214483523 - L2 LINE L2 -52 3261 3195 2852 209 32 36 chr1 67710151 67710865 -214482799 + MER21B LTR ERV1 96 806 -57 385 240 128 0 chr1 67710900 67711025 -214482639 - L2 LINE L2 0 3313 3173 * 767 285 53 8 chr1 67711021 67711267 -214482397 - MIR SINE MIR -3 259 3 317 246 238 8 chr1 67711382 67711504 -214482160 - MIR SINE MIR -85 177 28 30 27 0 0 chr1 67711654 67711691 -214481973 + AT_rich Low_complexity Low_complexity 1 37 0 416 202 48 0 chr1 67711733 67711837 -214481827 - L1ME2 LINE L1 -7 6157 6049 200 238 48 95 chr1 67712299 67712383 -214481281 - MIR SINE MIR -163 99 20 516 261 96 30 chr1 67712436 67712635 -214481029 + MIR SINE MIR 33 244 -18 311 213 24 71 chr1 67712693 67712820 -214480844 - Charlie7 DNA MER1_type -15 2597 2477 1047 253 76 84 chr1 67712867 67713568 -214480096 - Charlie7 DNA MER1_type -1912 700 6 306 273 171 0 chr1 67713599 67713687 -214479977 - L2 LINE L2 -14 3258 3156 414 0 0 0 chr1 67714799 67714845 -214478819 + (TA)n Simple_repeat Simple_repeat 2 47 0 375 262 122 18 chr1 67714869 67715033 -214478631 - L1ME4a LINE L1 -13 6108 5928 1862 148 20 26 chr1 67715744 67716049 -214477615 - AluSx SINE Alu -9 303 1 412 333 111 0 chr1 67716618 67716753 -214476911 - L2 LINE L2 -1 3271 3122 302 234 72 124 chr1 67717964 67718173 -214475491 - L2 LINE L2 -36 3277 3080 353 326 98 0 chr1 67718236 67718368 -214475296 + L2 LINE L2 3122 3266 -6 436 339 17 40 chr1 67719391 67719568 -214474096 - MIR3 SINE MIR -23 185 13 408 387 71 43 chr1 67719720 67720429 -214473235 - L2 LINE L2 -8 3264 2538 3023 189 27 18 chr1 67721309 67722060 -214471604 + L1MB3 LINE L1 5176 5930 -253 953 218 71 13 chr1 67722361 67722600 -214471064 - MIR SINE MIR -2 260 8 270 319 0 14 chr1 67723305 67723377 -214470287 + MIR SINE MIR 23 93 -169 1195 92 18 111 chr1 67723398 67723615 -214470049 - AluSg/x SINE Alu -11 301 105 2531 60 0 0 chr1 67724208 67724507 -214469157 - AluY SINE Alu -12 299 1 956 254 117 12 chr1 67724669 67725095 -214468569 + L1MC4a LINE L1 7091 7561 -247 266 260 0 14 chr1 67725145 67725218 -214468446 + (CA)n Simple_repeat Simple_repeat 1 72 0 358 320 72 8 chr1 67725342 67725467 -214468197 - L2 LINE L2 -4 3268 3136 407 201 12 225 chr1 67725600 67725756 -214467908 + MIR SINE MIR 36 121 -141 2511 58 7 3 chr1 67725756 67726066 -214467598 - AluY SINE Alu 0 311 1 407 201 12 225 chr1 67726066 67726158 -214467506 + MIR SINE MIR 121 231 -31 275 270 54 0 chr1 67726653 67726727 -214466937 - MIR SINE MIR -77 185 108 318 297 50 10 chr1 67726729 67726830 -214466834 - MIR SINE MIR -126 136 32 555 284 17 11 chr1 67727095 67727271 -214466393 + MIR SINE MIR 80 256 -6 207 279 117 54 chr1 67728102 67728213 -214465451 + L2 LINE L2 3137 3254 -18 216 0 0 0 chr1 67728244 67728268 -214465396 + (A)n Simple_repeat Simple_repeat 1 24 0 234 333 15 53 chr1 67729301 67729433 -214464231 - MIR SINE MIR -59 203 77 488 301 44 44 chr1 67729661 67729887 -214463777 + MIR SINE MIR 34 259 -3 927 252 44 47 chr1 67731133 67731494 -214462170 + MLT1I LTR MaLR 47 406 -3 317 270 114 72 chr1 67731841 67732034 -214461630 - MLT1L LTR MaLR -135 480 272 255 31 0 0 chr1 67732034 67732066 -214461598 + (TTG)n Simple_repeat Simple_repeat 2 33 0 317 270 114 72 chr1 67732066 67732135 -214461529 - MLT1L LTR MaLR -343 272 207 259 278 14 0 chr1 67732213 67732285 -214461379 - MLT1L LTR MaLR -540 75 3 409 250 79 29 chr1 67732317 67732457 -214461207 + MER103 DNA DNA 5 151 -15 23 54 0 0 chr1 67732863 67732900 -214460764 + AT_rich Low_complexity Low_complexity 1 37 0 521 271 220 5 chr1 67733984 67734198 -214459466 - MIR SINE MIR 0 262 3 409 261 182 0 chr1 67734214 67734379 -214459285 - MIR SINE MIR 0 262 68 940 227 14 18 chr1 67734701 67734921 -214458743 - MER58A DNA MER1_type -5 219 1 663 310 63 10 chr1 67735799 67736102 -214457562 + L1MC4 LINE L1 6704 7022 -1020 678 199 126 13 chr1 67736414 67736565 -214457099 - MER5B DNA MER1_type -4 174 7 356 321 31 67 chr1 67736726 67736919 -214456745 - MIR SINE MIR -69 193 8 958 246 214 2 chr1 67738700 67739126 -214454538 - LTR33A LTR ERVL 0 523 8 540 299 127 0 chr1 67739464 67739661 -214454003 - MIR SINE MIR -40 222 1 2582 199 145 113 chr1 67739721 67740043 -214453621 - L1MC3 LINE L1 -12 7773 7463 2320 94 3 0 chr1 67740043 67740341 -214453323 + AluSq SINE Alu 1 299 -14 2582 199 145 113 chr1 67740341 67740584 -214453080 - L1MC3 LINE L1 -322 7463 7229 388 205 36 0 chr1 67740584 67740667 -214452997 - MLT1F1 LTR MaLR -443 124 39 2582 199 145 113 chr1 67740667 67741146 -214452518 - L1MC3 LINE L1 -556 7229 6610 421 381 61 4 chr1 67741261 67741581 -214452083 - L2 LINE L2 -215 3057 2722 183 80 0 0 chr1 67742160 67742185 -214451479 + (A)n Simple_repeat Simple_repeat 1 25 0 219 323 181 16 chr1 67742192 67742319 -214451345 - L3 LINE CR1 -56 1521 1374 416 288 6 80 chr1 67742908 67743071 -214450593 + MIR SINE MIR 47 197 -65 237 286 0 0 chr1 67743120 67743176 -214450488 - L2 LINE L2 0 3272 3217 977 163 6 12 chr1 67743485 67743651 -214450013 - FRAM SINE Alu -18 158 1 292 277 118 17 chr1 67743944 67744063 -214449601 - L2 LINE L2 -1 3312 3182 1846 171 0 3 chr1 67744086 67744385 -214449279 - AluJo SINE Alu -10 302 5 493 286 50 25 chr1 67746353 67746514 -214447150 + MIR SINE MIR 34 198 -64 460 310 7 14 chr1 67746521 67746663 -214447001 + LTR33 LTR ERVL 10 150 -371 1976 129 16 60 chr1 67746744 67747125 -214446539 - THE1B LTR MaLR 0 364 1 10904 97 38 1 chr1 67747125 67748649 -214445015 - THE1B-int LTR MaLR 0 1580 1 1644 149 76 51 chr1 67748649 67749004 -214444660 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr1 67749873 67749896 -214443768 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr1 67749915 67749938 -214443726 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 190 409 61 30 chr1 67750418 67750550 -214443114 - L2 LINE L2 -15 3257 3122 4426 161 33 52 chr1 67750861 67751431 -214442233 - L1MB5 LINE L1 0 6410 5831 2432 111 14 3 chr1 67751431 67751791 -214441873 + THE1B LTR MaLR 1 364 0 4426 161 33 52 chr1 67751791 67751948 -214441716 - L1MB5 LINE L1 -579 5831 5673 288 53 0 0 chr1 67751948 67751986 -214441678 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 4426 161 33 52 chr1 67751986 67752264 -214441400 - L1MB5 LINE L1 -737 5673 5420 12886 202 46 24 chr1 67752267 67757564 -214436100 + L1MA5 LINE L1 1439 6871 -491 191 35 0 35 chr1 67757564 67757593 -214436071 + (TA)n Simple_repeat Simple_repeat 2 29 0 12886 202 46 24 chr1 67757593 67758089 -214435575 + L1MA5 LINE L1 6871 7354 -8 10168 226 41 34 chr1 67758096 67758875 -214434789 - L1MB5 LINE L1 -983 5399 4627 2146 139 3 0 chr1 67758875 67759184 -214434480 - AluSx SINE Alu -2 310 1 10168 226 41 34 chr1 67759184 67759349 -214434315 - L1MB5 LINE L1 -1755 4627 4465 2083 189 41 7 chr1 67759349 67759761 -214433903 + MSTB LTR MaLR 1 426 0 10168 226 41 34 chr1 67759761 67761600 -214432064 - L1MB5 LINE L1 -1917 4465 2582 1553 212 10 13 chr1 67761600 67761783 -214431881 - AluJb SINE Alu -10 302 119 1029 139 0 0 chr1 67761783 67761956 -214431708 + (TC)n Simple_repeat Simple_repeat 2 174 0 1553 212 10 13 chr1 67761956 67762074 -214431590 - AluJb SINE Alu -193 119 2 10168 226 41 34 chr1 67762074 67762739 -214430925 - L1MB5 LINE L1 -3800 2582 1923 270 300 0 0 chr1 67762767 67762857 -214430807 + T-rich Low_complexity Low_complexity 1 90 0 567 170 0 18 chr1 67762888 67763000 -214430664 - L1PA11 LINE L1 -1446 4700 4591 * 6418 108 23 10 chr1 67762998 67763505 -214430159 + L1PA11 LINE L1 4717 5216 -958 294 29 0 0 chr1 67763505 67763540 -214430124 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 6418 108 23 10 chr1 67763540 67764437 -214429227 + L1PA11 LINE L1 5216 6150 -24 324 144 96 48 chr1 67764747 67764858 -214428806 - MIR SINE MIR -68 140 41 2273 255 115 39 chr1 67765675 67766422 -214427242 + L1MC4 LINE L1 6777 7626 -416 453 36 0 0 chr1 67766422 67766477 -214427187 + (CA)n Simple_repeat Simple_repeat 1 55 0 2273 255 115 39 chr1 67766477 67766766 -214426898 + L1MC4 LINE L1 7626 7892 -150 593 276 83 6 chr1 67767278 67767459 -214426205 + MIR SINE MIR 68 262 0 2337 57 13 27 chr1 67767523 67767823 -214425841 - AluSc SINE Alu -13 296 1 2086 96 4 0 chr1 67767830 67768102 -214425562 - AluSp SINE Alu -12 301 29 37 23 0 0 chr1 67768777 67768821 -214424843 + AT_rich Low_complexity Low_complexity 1 44 0 1576 190 17 3 chr1 67768846 67769141 -214424523 + AluJo SINE Alu 1 299 -13 1442 260 66 13 chr1 67770056 67770433 -214423231 + LTR16A LTR ERVL 54 450 0 184 200 31 0 chr1 67771444 67771509 -214422155 + CT-rich Low_complexity Low_complexity 2 68 0 308 277 85 0 chr1 67772138 67772232 -214421432 - MIR SINE MIR 0 262 161 239 289 33 33 chr1 67772703 67772793 -214420871 - MIR SINE MIR -105 157 68 210 310 0 28 chr1 67772856 67772927 -214420737 + (CATG)n Simple_repeat Simple_repeat 3 71 0 312 195 81 73 chr1 67773003 67773126 -214420538 - L1ME4a LINE L1 -31 6090 5967 215 266 13 25 chr1 67773150 67773229 -214420435 + (CATA)n Simple_repeat Simple_repeat 2 79 0 734 128 0 26 chr1 67773255 67773372 -214420292 - FLAM_C SINE Alu -19 114 1 977 218 129 28 chr1 67773389 67773853 -214419811 - L1ME4a LINE L1 -200 5921 5411 266 272 144 12 chr1 67773861 67774118 -214419546 - L1ME4a LINE L1 -1 6120 5830 2151 111 0 16 chr1 67775373 67775688 -214417976 - AluSx SINE Alu -2 310 1 34 0 0 0 chr1 67776052 67776086 -214417578 + GC_rich Low_complexity Low_complexity 1 34 0 304 274 132 89 chr1 67776098 67776606 -214417058 - L1M2 LINE L1 -5539 1310 781 263 372 103 14 chr1 67778369 67778651 -214415013 + L2 LINE L2 1557 1863 -1451 21 36 0 0 chr1 67778815 67778843 -214414821 + AT_rich Low_complexity Low_complexity 1 28 0 294 295 83 83 chr1 67778869 67779171 -214414493 + L2 LINE L2 2831 3132 -181 314 299 87 0 chr1 67779251 67779378 -214414286 - L1M4 LINE L1 -2005 4141 4004 327 323 63 8 chr1 67779900 67780027 -214413637 + MIR3 SINE MIR 64 197 -11 2473 90 0 0 chr1 67780470 67780781 -214412883 - AluSx SINE Alu -1 311 1 290 338 45 23 chr1 67781567 67781700 -214411964 - MIR SINE MIR -8 254 119 275 325 56 101 chr1 67781733 67782200 -214411464 + L2 LINE L2 2812 3257 -15 24 32 0 0 chr1 67783695 67783726 -214409938 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr1 67783986 67784009 -214409655 + AT_rich Low_complexity Low_complexity 1 23 0 2446 72 0 0 chr1 67784370 67784677 -214408987 + AluY SINE Alu 1 307 -4 2323 95 0 0 chr1 67785542 67785837 -214407827 - AluSg SINE Alu -15 295 1 1187 251 127 10 chr1 67786194 67786605 -214407059 - MLT1C LTR MaLR 0 467 9 401 380 55 13 chr1 67786821 67787058 -214406606 - MIR SINE MIR -1 261 15 2050 131 34 113 chr1 67788002 67788095 -214405569 - MLT2D LTR ERVL -5 409 310 2094 113 3 7 chr1 67788095 67788395 -214405269 - AluSp SINE Alu -14 299 1 2050 131 34 113 chr1 67788395 67788745 -214404919 - MLT2D LTR ERVL -104 310 1 257 329 41 62 chr1 67789128 67789274 -214404390 + MIR3 SINE MIR 59 201 -7 404 275 93 72 chr1 67789658 67789851 -214403813 + MIR SINE MIR 63 259 -3 1859 245 48 9 chr1 67790280 67790819 -214402845 - L1ME1 LINE L1 -41 6194 5635 * 2352 243 122 31 chr1 67790810 67791986 -214401678 - L1ME1 LINE L1 -2692 3523 2241 1582 310 46 44 chr1 67791977 67792218 -214401446 - L1ME1 LINE L1 -5371 1025 786 * 1967 101 4 11 chr1 67792218 67792494 -214401170 - AluSq SINE Alu -1 312 39 1582 310 46 44 chr1 67792494 67793214 -214400450 - L1ME1 LINE L1 -5610 786 62 209 357 24 12 chr1 67794957 67795041 -214398623 + MIR3 SINE MIR 12 96 -112 240 378 17 8 chr1 67795742 67795861 -214397803 + MIR SINE MIR 21 140 -68 416 225 193 16 chr1 67796043 67796230 -214397434 - L1M4 LINE L1 -2847 3299 3080 25 51 0 0 chr1 67796289 67796328 -214397336 + AT_rich Low_complexity Low_complexity 1 39 0 1805 127 89 25 chr1 67796983 67797299 -214396365 - MER1B DNA MER1_type 0 337 2 21 0 0 0 chr1 67798178 67798199 -214395465 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 67798562 67798592 -214395072 + AT_rich Low_complexity Low_complexity 1 30 0 12377 77 6 2 chr1 67799027 67801495 -214392169 - L1PA7 LINE L1 0 6154 3679 268 269 46 19 chr1 67801983 67802091 -214391573 + MIR SINE MIR 119 229 -33 754 297 63 0 chr1 67802243 67802465 -214391199 + MIR SINE MIR 6 241 -21 239 299 39 0 chr1 67802750 67802827 -214390837 - MIR SINE MIR -93 115 36 182 319 0 0 chr1 67804650 67804697 -214388967 - MIR SINE MIR -125 83 37 182 288 86 93 chr1 67804998 67805137 -214388527 - L2 LINE L2 -10 3262 3125 1006 181 24 44 chr1 67805455 67805704 -214387960 - L1MC4 LINE L1 -5 8037 7794 1229 234 108 28 chr1 67805719 67806265 -214387399 - L1M4 LINE L1 -1281 4865 4276 1435 212 87 6 chr1 67806340 67806661 -214387003 - MLT1A1 LTR MaLR -3 362 16 1836 259 60 69 chr1 67806753 67807828 -214385836 - L1M4 LINE L1 -2047 4099 3035 745 71 27 0 chr1 67807831 67807943 -214385721 + (TTCC)n Simple_repeat Simple_repeat 4 118 0 884 257 50 15 chr1 67807956 67808294 -214385370 - L1M4 LINE L1 -3104 3042 2693 21 0 0 0 chr1 67808760 67808781 -214384883 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 67809025 67809061 -214384603 + AT_rich Low_complexity Low_complexity 1 36 0 9836 233 65 33 chr1 67810807 67811997 -214381667 - L1MB7 LINE L1 -14 6668 5518 1429 169 14 11 chr1 67811997 67812276 -214381388 + L1MC2 LINE L1 6055 6334 -10 9836 233 65 33 chr1 67812276 67815333 -214378331 - L1MB7 LINE L1 -1164 5518 2561 342 0 0 0 chr1 67815333 67815371 -214378293 + (TA)n Simple_repeat Simple_repeat 2 39 0 2395 100 0 0 chr1 67815371 67815681 -214377983 - AluSg SINE Alu 0 310 1 9836 233 65 33 chr1 67815681 67816177 -214377487 - L1MB7 LINE L1 -4120 2562 1744 487 188 56 62 chr1 67816172 67816316 -214377348 + L1M4 LINE L1 1000 1142 -5400 * 355 229 28 9 chr1 67816329 67816438 -214377226 + L1M4 LINE L1 1114 1224 -5322 3172 114 9 0 chr1 67816476 67816939 -214376725 - L1PA14 LINE L1 -13 6148 5682 260 213 113 12 chr1 67816990 67817070 -214376594 - L1MB7 LINE L1 -4976 1566 1479 1352 155 37 55 chr1 67817104 67817274 -214376390 - AluJb SINE Alu -12 300 135 274 23 47 0 chr1 67817274 67817317 -214376347 + (TA)n Simple_repeat Simple_repeat 2 46 0 1352 155 37 55 chr1 67817317 67817417 -214376247 - AluJb SINE Alu -177 135 35 720 211 7 0 chr1 67817434 67817576 -214376088 - FLAM_C SINE Alu 0 143 1 4204 223 72 41 chr1 67817576 67818874 -214374790 - L1MB7 LINE L1 -5177 1365 27 498 339 37 18 chr1 67819277 67819495 -214374169 - MIR SINE MIR -21 241 20 1021 156 23 0 chr1 67819875 67820048 -214373616 + AluJo SINE Alu 86 262 -50 370 207 0 27 chr1 67820059 67820170 -214373494 + GA-rich Low_complexity Low_complexity 3 110 0 189 107 0 0 chr1 67820233 67820261 -214373403 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 27 0 0 0 chr1 67820402 67820429 -214373235 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr1 67820952 67820995 -214372669 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 67821477 67821498 -214372166 + AT_rich Low_complexity Low_complexity 1 21 0 1737 165 0 51 chr1 67821917 67822095 -214371569 - AluSx SINE Alu -13 299 142 2266 103 0 13 chr1 67822095 67822407 -214371257 - AluSg SINE Alu -2 308 1 1737 165 0 51 chr1 67822407 67822543 -214371121 - AluSx SINE Alu -170 142 1 261 273 165 33 chr1 67822635 67822756 -214370908 + MIR SINE MIR 3 139 -123 610 261 43 56 chr1 67822835 67823069 -214370595 - MIR SINE MIR -25 237 7 21 0 0 0 chr1 67823674 67823695 -214369969 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 67825513 67825548 -214368116 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 67825585 67825629 -214368035 + AT_rich Low_complexity Low_complexity 1 44 0 200 283 0 0 chr1 67825720 67825780 -214367884 + T-rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr1 67825836 67825861 -214367803 + AT_rich Low_complexity Low_complexity 1 25 0 374 217 83 17 chr1 67826348 67826468 -214367196 - MIR SINE MIR -74 188 61 28 0 0 0 chr1 67827102 67827130 -214366534 + AT_rich Low_complexity Low_complexity 1 28 0 648 300 107 11 chr1 67827780 67828050 -214365614 - MLT1J1 LTR MaLR -56 390 95 577 293 22 44 chr1 67828083 67828356 -214365308 - L1ME LINE L1 -306 5815 5549 350 304 59 15 chr1 67828613 67828748 -214364916 + L2 LINE L2 3172 3312 -1 32 26 0 0 chr1 67828830 67828869 -214364795 + AT_rich Low_complexity Low_complexity 1 39 0 2187 122 0 0 chr1 67830520 67830823 -214362841 - AluSx SINE Alu -9 303 1 319 320 96 8 chr1 67831334 67831459 -214362205 + MIR3 SINE MIR 38 173 -35 240 181 181 87 chr1 67832482 67832609 -214361055 + MER112 DNA MER1_type 11 149 -111 236 232 37 61 chr1 67833402 67833484 -214360180 - L2 LINE L2 0 3313 3234 820 200 77 0 chr1 67833606 67833776 -214359888 - MER5A DNA MER1_type -2 187 5 21 0 0 0 chr1 67833890 67833911 -214359753 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 67834089 67834118 -214359546 + AT_rich Low_complexity Low_complexity 1 29 0 205 146 49 0 chr1 67834297 67834338 -214359326 + A-rich Low_complexity Low_complexity 3 45 0 351 0 0 0 chr1 67835052 67835091 -214358573 + (TA)n Simple_repeat Simple_repeat 2 40 0 1043 159 90 0 chr1 67835409 67835598 -214358066 - MER3 DNA MER1_type -1 208 3 1125 181 9 59 chr1 67835818 67836039 -214357625 - MER58A DNA MER1_type 0 224 15 2061 122 7 0 chr1 67837942 67838230 -214355434 + AluSx SINE Alu 1 290 -22 422 218 14 109 chr1 67838257 67838404 -214355260 + MLT1J LTR MaLR 7 139 -372 6121 236 55 21 chr1 67838477 67840158 -214353506 - L1M4 LINE L1 -4799 1845 15 434 321 179 35 chr1 67840361 67840707 -214352957 - L2 LINE L2 -9 3263 2868 1179 87 13 135 chr1 67840812 67841042 -214352622 + MER30 DNA MER1_type 1 202 -28 776 291 125 10 chr1 67841368 67841664 -214352000 - MLT1I LTR MaLR 0 409 80 315 250 79 64 chr1 67841760 67841900 -214351764 - MIR SINE MIR -100 162 21 368 276 86 0 chr1 67842489 67842594 -214351070 - L2 LINE L2 -1 3312 3199 1155 249 116 50 chr1 67842595 67843097 -214350567 - MLT1H LTR MaLR 0 549 15 388 314 97 42 chr1 67843134 67843567 -214350097 + L1MEc LINE L1 22 478 -5918 7105 54 5 0 chr1 67843633 67844505 -214349159 - L1PA8 LINE L1 -1 6171 5296 2395 88 0 0 chr1 67844504 67844834 -214348830 + L1PA8 LINE L1 4967 5296 -850 * 1324 291 96 39 chr1 67844943 67845913 -214347751 + L1MEc LINE L1 630 1654 -4742 263 213 266 21 chr1 67846204 67846298 -214347366 + L2 LINE L2 3148 3264 -8 1114 212 119 33 chr1 67847088 67847484 -214346180 + MER31B LTR ERV1 37 543 0 6565 88 7 24 chr1 67848086 67849069 -214344595 + MER11C LTR ERVK 1 1057 -14 201 224 134 15 chr1 67849392 67849459 -214344205 - MIR SINE MIR -119 143 69 2384 134 36 17 chr1 67849701 67850058 -214343606 - THE1B LTR MaLR 0 364 1 12285 99 14 0 chr1 67850058 67851617 -214342047 - THE1B-int LTR MaLR 0 1580 1 2389 139 31 19 chr1 67851617 67851977 -214341687 - THE1B LTR MaLR 0 364 1 345 244 52 52 chr1 67852624 67852739 -214340925 - MIR3 SINE MIR -6 202 88 1801 221 18 28 chr1 67853195 67853593 -214340071 + MSTD LTR MaLR 3 396 0 1832 125 64 10 chr1 67853804 67854100 -214339564 + AluSx SINE Alu 1 312 0 202 294 29 39 chr1 67854777 67854879 -214338785 - MIR3 SINE MIR -102 106 6 229 341 11 0 chr1 67855841 67855932 -214337732 + MIR SINE MIR 33 124 -138 21 0 0 0 chr1 67856026 67856047 -214337617 + AT_rich Low_complexity Low_complexity 1 21 0 872 204 111 89 chr1 67856250 67856971 -214336693 - L1MD3 LINE L1 -6 7989 7285 1229 8 0 0 chr1 67856971 67857102 -214336562 - L1PA3 LINE L1 0 6155 6025 872 204 111 89 chr1 67857102 67857853 -214335811 - L1MD3 LINE L1 -710 7285 6459 233 307 31 47 chr1 67858060 67858187 -214335477 - L1ME4a LINE L1 -18 6103 5979 208 364 20 10 chr1 67858603 67858702 -214334962 + MIR SINE MIR 38 137 -71 225 350 147 13 chr1 67858826 67858983 -214334681 + MIR3 SINE MIR 30 207 -1 1303 263 76 27 chr1 67859423 67859903 -214333761 + MLT1H LTR MaLR 19 550 -5 240 289 75 50 chr1 67860933 67861092 -214332572 + MIR SINE MIR 11 173 -89 381 194 60 127 chr1 67861093 67861227 -214332437 + L2 LINE L2 3189 3313 0 28 61 0 0 chr1 67861410 67861459 -214332205 + AT_rich Low_complexity Low_complexity 1 49 0 2202 92 3 26 chr1 67861666 67861972 -214331692 + AluSq SINE Alu 1 299 -14 446 306 115 40 chr1 67862948 67863528 -214330136 + L2 LINE L2 2420 3054 -218 2115 105 25 0 chr1 67863750 67864035 -214329629 - AluSx SINE Alu -20 292 1 573 347 58 0 chr1 67864035 67864277 -214329387 - MIR SINE MIR -3 259 4 258 303 120 66 chr1 67864549 67864739 -214328925 + L3 LINE CR1 1085 1296 -281 1741 132 40 4 chr1 67864739 67865011 -214328653 + L1PA16 LINE L1 5885 6166 0 258 303 120 66 chr1 67865011 67865094 -214328570 + L3 LINE CR1 1296 1373 -204 197 303 82 74 chr1 67865106 67865228 -214328436 + MIR SINE MIR 21 143 -65 1394 75 0 23 chr1 67865420 67865594 -214328070 + AluSc SINE Alu 9 178 -131 22 56 0 0 chr1 67865616 67865652 -214328012 + AT_rich Low_complexity Low_complexity 1 36 0 320 176 54 27 chr1 67865906 67865980 -214327684 - MER103 DNA DNA -55 111 36 1311 189 60 20 chr1 67866624 67866872 -214326792 - MLT1A1 LTR MaLR -107 258 1 279 329 103 7 chr1 67866919 67867074 -214326590 + MIR SINE MIR 28 197 -65 829 252 100 67 chr1 67867166 67867242 -214326422 + MLT1J LTR MaLR 30 102 -409 2251 47 0 0 chr1 67867242 67867499 -214326165 + AluY SINE Alu 16 272 -39 829 252 100 67 chr1 67867499 67867763 -214325901 + MLT1J LTR MaLR 102 381 -130 1460 155 102 0 chr1 67867834 67868099 -214325565 - L1MB2 LINE L1 -13 6158 5867 467 252 91 0 chr1 67868164 67868307 -214325357 + MER112 DNA MER1_type 95 250 -10 497 279 49 27 chr1 67869511 67869694 -214323970 + MIR SINE MIR 7 193 -69 213 332 209 14 chr1 67869765 67869985 -214323679 - L3 LINE CR1 -323 1254 992 2342 220 20 29 chr1 67870545 67871055 -214322609 + MLT1D LTR MaLR 1 505 0 374 211 102 34 chr1 67871365 67871512 -214322152 + L2 LINE L2 2421 2577 -737 801 199 88 68 chr1 67871515 67871867 -214321797 + L1MC5 LINE L1 7587 7945 -16 750 208 108 8 chr1 67872332 67872575 -214321089 + L1ME2 LINE L1 5635 5903 -261 320 273 109 73 chr1 67873335 67873445 -214320219 + L2 LINE L2 3200 3313 0 649 276 15 58 chr1 67873784 67874045 -214319619 - MIR SINE MIR -1 261 12 249 333 104 21 chr1 67874135 67874279 -214319385 - L2 LINE L2 -216 3056 2901 954 311 115 54 chr1 67874414 67875376 -214318288 + L2 LINE L2 1940 2960 -354 272 317 24 49 chr1 67875502 67875625 -214318039 + L2 LINE L2 3177 3296 -17 3593 190 27 79 chr1 67875667 67876689 -214316975 + LTR5 LTR ERVK 1 969 0 327 121 0 0 chr1 67877519 67877577 -214316087 + (TG)n Simple_repeat Simple_repeat 2 59 0 1780 180 3 0 chr1 67877774 67878057 -214315607 + AluJo SINE Alu 1 284 -28 271 280 127 20 chr1 67878355 67878505 -214315159 + MIR SINE MIR 27 192 -70 314 252 145 6 chr1 67878675 67878834 -214314830 - MIR SINE MIR -37 225 45 206 284 0 0 chr1 67878899 67878966 -214314698 + GA-rich Low_complexity Low_complexity 2 68 0 199 289 19 19 chr1 67879404 67879456 -214314208 - MIR SINE MIR -181 81 30 253 281 0 0 chr1 67880382 67880439 -214313225 - L1ME LINE L1 -555 5566 5510 192 290 90 40 chr1 67881563 67881663 -214312001 - L2 LINE L2 -302 2970 2866 290 243 162 18 chr1 67881670 67881781 -214311883 - L2 LINE L2 -18 3295 3169 366 316 48 6 chr1 67882033 67882201 -214311463 + MIR SINE MIR 13 187 -75 24 0 0 0 chr1 67882210 67882234 -214311430 + AT_rich Low_complexity Low_complexity 1 24 0 288 271 0 0 chr1 67882441 67882500 -214311164 + L2 LINE L2 3213 3271 -1 6099 178 40 5 chr1 67882572 67883438 -214310226 + MER11D LTR ERVK 1 897 0 202 368 39 39 chr1 67883446 67883601 -214310063 + MIR SINE MIR 37 191 -71 321 266 0 0 chr1 67883801 67883865 -214309799 + MIR SINE MIR 52 115 -93 503 232 52 65 chr1 67883964 67884119 -214309545 + L1MDa LINE L1 259 411 -6129 5261 223 59 32 chr1 67884494 67886828 -214306836 + L1MDa LINE L1 907 3279 -3261 200 125 0 83 chr1 67888058 67888106 -214305558 + (CCCCG)n Simple_repeat Simple_repeat 1 44 0 387 308 89 0 chr1 67888315 67888461 -214305203 - MIR SINE MIR -3 259 101 225 217 33 33 chr1 67888560 67888620 -214305044 + L2 LINE L2 3251 3310 -3 1908 123 50 0 chr1 67888831 67889108 -214304556 - AluSx SINE Alu -7 305 15 373 321 36 0 chr1 67889287 67889424 -214304240 - L1ME3A LINE L1 -294 5876 5735 2062 256 80 24 chr1 67889476 67890016 -214303648 + L1MCa LINE L1 11 580 -6279 4225 207 45 18 chr1 67890027 67891387 -214302277 + L1M4b LINE L1 799 2177 -4782 2208 227 18 2 chr1 67891410 67891932 -214301732 - L1M3 LINE L1 -424 5747 5216 406 275 79 54 chr1 67891934 67892174 -214301490 + L1M4b LINE L1 2171 2416 -4543 1508 217 26 89 chr1 67892225 67892640 -214301024 + L1MCa LINE L1 547 935 -6022 22 0 0 0 chr1 67893327 67893349 -214300315 + AT_rich Low_complexity Low_complexity 1 22 0 2999 172 99 7 chr1 67893751 67893941 -214299723 + L1MCa LINE L1 2268 2439 -4518 1795 158 0 0 chr1 67893941 67894214 -214299450 - AluSx SINE Alu -3 309 37 2999 172 99 7 chr1 67894214 67894713 -214298951 + L1MCa LINE L1 2439 3019 -3938 1089 116 5 58 chr1 67894711 67894900 -214298764 - L1 LINE L1 -1779 4367 4189 * 5577 189 34 10 chr1 67894909 67896239 -214297425 + L1MA9 LINE L1 4416 5809 -503 492 18 0 0 chr1 67896239 67896296 -214297368 + (TA)n Simple_repeat Simple_repeat 1 57 0 5577 189 34 10 chr1 67896296 67896812 -214296852 + L1MA9 LINE L1 5809 6311 -1 464 238 48 14 chr1 67896844 67896991 -214296673 + L1M4 LINE L1 4408 4559 -1587 1837 137 35 11 chr1 67897025 67897310 -214296354 - AluSq SINE Alu -21 292 1 396 341 37 29 chr1 67897340 67897586 -214296078 - MIR SINE MIR -10 252 5 674 314 52 56 chr1 67898214 67898711 -214294953 - MLT1J LTR MaLR -2 509 15 11460 156 23 12 chr1 67898772 67899401 -214294263 - L1M1 LINE L1 -4895 2670 2049 3852 200 20 58 chr1 67899401 67900408 -214293256 - LTR5 LTR ERVK 0 969 1 11460 156 23 12 chr1 67900408 67901668 -214291996 - L1M1 LINE L1 -5516 2049 761 386 61 0 0 chr1 67901716 67901765 -214291899 + MADE1 DNA Mariner 32 80 0 3088 143 14 61 chr1 67901765 67902358 -214291306 + L1MA4A LINE L1 5555 6119 -184 5113 146 100 1 chr1 67902454 67903347 -214290317 + Tigger3b DNA MER2_type 1 981 -250 511 243 104 159 chr1 67903348 67904590 -214289074 - L2 LINE L2 -106 3207 2041 556 294 70 0 chr1 67904993 67905207 -214288457 - L2 LINE L2 -1303 2011 1783 398 330 143 13 chr1 67905387 67905468 -214288196 - L1MC/D LINE L1 -2047 5761 5692 1944 161 0 0 chr1 67905468 67905766 -214287898 - AluJb SINE Alu -14 298 1 398 330 143 13 chr1 67905766 67905999 -214287665 - L1MC/D LINE L1 -2116 5692 5406 510 70 0 0 chr1 67906651 67906722 -214286942 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1674 297 77 10 chr1 67906975 67907861 -214285803 + L2 LINE L2 2368 3312 -1 259 305 70 55 chr1 67908231 67908359 -214285305 - MIR3 SINE MIR -73 135 6 310 347 114 0 chr1 67909419 67909586 -214284078 + L2 LINE L2 2574 2759 -555 571 214 84 125 chr1 67909595 67910011 -214283653 - Charlie7 DNA MER1_type -1 2611 2213 1117 172 0 0 chr1 67910124 67910293 -214283371 + FAM SINE Alu 1 169 -6 377 65 0 0 chr1 67910957 67911003 -214282661 - LTR1 LTR ERV1 -337 448 403 278 238 20 69 chr1 67911374 67911475 -214282189 + MLT2E LTR ERVL 32 127 -501 1097 241 88 50 chr1 67911852 67912355 -214281309 - MLT1H LTR MaLR -27 522 1 491 303 15 8 chr1 67912357 67912489 -214281175 - MIR SINE MIR -128 134 2 311 206 49 78 chr1 67913980 67914082 -214279582 - L2 LINE L2 -5 3308 3210 690 293 68 96 chr1 67914524 67914737 -214278927 - L2 LINE L2 -2 3311 3094 267 103 0 0 chr1 67914737 67914776 -214278888 + (TG)n Simple_repeat Simple_repeat 1 39 0 690 293 68 96 chr1 67914776 67915173 -214278491 - L2 LINE L2 -219 3094 2723 681 258 172 39 chr1 67915173 67915534 -214278130 + MLT1I LTR MaLR 1 409 0 690 293 68 96 chr1 67915534 67915573 -214278091 - L2 LINE L2 -590 2723 2684 517 292 51 73 chr1 67915713 67916094 -214277570 + L1MC4 LINE L1 6217 6605 -1203 1758 168 11 3 chr1 67916094 67916379 -214277285 + AluJb SINE Alu 1 287 -25 326 42 21 0 chr1 67916382 67916430 -214277234 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 517 292 51 73 chr1 67916430 67916525 -214277139 + L1MC4 LINE L1 6509 6605 -1203 1494 258 52 40 chr1 67916529 67917111 -214276553 + L1MC4 LINE L1 7048 7636 -406 243 88 0 0 chr1 67917139 67917173 -214276491 + (TG)n Simple_repeat Simple_repeat 2 35 0 280 106 0 21 chr1 67917173 67917220 -214276444 - L1MC4 LINE L1 -140 7902 7857 221 312 0 13 chr1 67917257 67917334 -214276330 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 388 237 0 51 chr1 67917391 67917509 -214276155 + L1MC4 LINE L1 7931 8042 0 564 238 188 29 chr1 67917988 67918228 -214275436 + MLT1G LTR MaLR 11 288 -302 544 176 92 72 chr1 67918281 67918434 -214275230 + MLT1G LTR MaLR 407 562 -5 228 281 73 37 chr1 67918444 67918608 -214275056 + HAL1 LINE L1 161 330 -2177 351 340 20 39 chr1 67918644 67918797 -214274867 + HAL1 LINE L1 405 554 -1953 376 35 35 0 chr1 67918912 67918970 -214274694 + (CA)n Simple_repeat Simple_repeat 1 60 0 438 264 79 57 chr1 67918971 67919198 -214274466 + HAL1 LINE L1 1318 1549 -958 1251 297 145 36 chr1 67919382 67920236 -214273428 + L2 LINE L2 88 1034 -2280 524 336 112 0 chr1 67920247 67920524 -214273140 + L2 LINE L2 1482 1789 -1525 1631 110 0 0 chr1 67920570 67920798 -214272866 + L1PB1 LINE L1 5564 5791 -360 238 115 39 19 chr1 67920800 67920852 -214272812 + (TATG)n Simple_repeat Simple_repeat 4 56 0 228 132 19 57 chr1 67920852 67920905 -214272759 + L1MC4 LINE L1 6652 6702 -1340 2907 91 0 0 chr1 67920927 67921290 -214272374 + L1PB1 LINE L1 5784 6146 -5 1162 317 21 6 chr1 67921325 67921656 -214272008 - LTR16C LTR ERVL 0 491 156 278 258 43 11 chr1 67921715 67921808 -214271856 + L2 LINE L2 3214 3309 -4 1739 120 12 12 chr1 67921843 67922101 -214271563 + AluSx SINE Alu 44 301 -11 4078 180 55 26 chr1 67922104 67923394 -214270270 + L1MB7 LINE L1 4858 6184 0 682 290 91 47 chr1 67923395 67923922 -214269742 + HAL1 LINE L1 1618 2167 -340 212 294 0 15 chr1 67923931 67923999 -214269665 - MIR SINE MIR -100 108 42 292 120 0 256 chr1 67924292 67924409 -214269255 - L1MB8 LINE L1 0 6178 6092 2444 179 47 18 chr1 67924413 67924920 -214268744 - L1MB4 LINE L1 0 6180 5659 261 368 77 8 chr1 67924937 67925054 -214268610 + MIR SINE MIR 16 140 -68 27 0 0 0 chr1 67925160 67925187 -214268477 + AT_rich Low_complexity Low_complexity 1 27 0 805 298 108 49 chr1 67925376 67925869 -214267795 - LTR67 LTR ERVL -34 523 2 1865 273 66 24 chr1 67925982 67926649 -214267015 - L2 LINE L2 -502 2812 2118 2121 136 0 0 chr1 67926896 67927191 -214266473 - AluSx SINE Alu -17 295 1 479 281 132 31 chr1 67927568 67927796 -214265868 - MIR SINE MIR -11 251 1 22 35 0 0 chr1 67929045 67929074 -214264590 + AT_rich Low_complexity Low_complexity 1 29 0 5321 117 266 76 chr1 67930044 67931471 -214262193 - pTR5 LTR ERV1 0 2438 741 1666 92 100 20 chr1 67931752 67932028 -214261636 + AluSx SINE Alu 29 312 0 248 189 19 0 chr1 67932165 67932218 -214261446 - MIR SINE MIR -89 119 66 353 317 84 26 chr1 67932982 67933209 -214260455 + L3 LINE CR1 1085 1324 -253 26 0 0 0 chr1 67933211 67933237 -214260427 + AT_rich Low_complexity Low_complexity 1 26 0 361 352 65 9 chr1 67933323 67933553 -214260111 - MIR SINE MIR -18 244 2 481 347 48 35 chr1 67934105 67934496 -214259168 + L2 LINE L2 2782 3183 -89 579 290 21 16 chr1 67934919 67935112 -214258552 + MIR SINE MIR 69 262 0 232 196 36 0 chr1 67935244 67935300 -214258364 + MIR SINE MIR 94 151 -111 189 0 0 0 chr1 67935581 67935602 -214258062 + (TC)n Simple_repeat Simple_repeat 2 22 0 1819 199 3 0 chr1 67935977 67936294 -214257370 - 7SLRNA srpRNA srpRNA -2 318 1 837 150 0 8 chr1 67936297 67936424 -214257240 - FLAM_A SINE Alu -7 135 10 292 296 65 9 chr1 67936720 67936828 -214256836 + MIR3 SINE MIR 43 156 -52 1123 224 91 9 chr1 67936846 67937177 -214256487 - L1M4 LINE L1 -2251 3895 3538 451 319 38 27 chr1 67937458 67937643 -214256021 + MIR SINE MIR 28 214 -48 180 0 0 0 chr1 67937800 67937820 -214255844 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 970 247 12 28 chr1 67938417 67938672 -214254992 - MIR SINE MIR 0 262 12 183 301 48 48 chr1 67938698 67938781 -214254883 - MIR SINE MIR -70 192 110 * 232 187 33 0 chr1 67938766 67938838 -214254826 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 236 256 56 33 chr1 67938919 67939009 -214254655 - MIR SINE MIR -165 97 6 749 199 7 0 chr1 67939435 67939581 -214254083 - MER20 DNA MER1_type -6 213 67 406 277 123 27 chr1 67939670 67939890 -214253774 - MIR SINE MIR 0 262 22 256 336 46 30 chr1 67940257 67940388 -214253276 - MIR SINE MIR -57 151 19 354 303 29 67 chr1 67940601 67940809 -214252855 + MIR SINE MIR 42 241 -21 291 409 31 6 chr1 67941431 67941590 -214252074 - MIR SINE MIR -33 229 67 196 319 150 74 chr1 67941589 67942165 -214251499 + L2 LINE L2 2634 3232 -40 * 294 163 0 0 chr1 67942587 67942630 -214251034 + L2 LINE L2 3225 3267 -5 188 304 101 0 chr1 67942826 67942895 -214250769 + MIR SINE MIR 117 192 -70 236 286 0 0 chr1 67943185 67943241 -214250423 + MIR SINE MIR 85 140 -68 365 326 125 0 chr1 67943785 67943969 -214249695 - L3 LINE CR1 -95 1482 1276 360 344 76 20 chr1 67944145 67944395 -214249269 - L2 LINE L2 -189 3083 2820 204 232 36 36 chr1 67944572 67944628 -214249036 + L2 LINE L2 3258 3313 0 290 284 189 7 chr1 67945504 67945652 -214248012 - MLT1I LTR MaLR -122 287 113 221 382 15 8 chr1 67946190 67946321 -214247343 + L2 LINE L2 2936 3067 -205 1881 209 50 24 chr1 67946410 67946865 -214246799 + MLT1C LTR MaLR 1 467 0 186 43 0 0 chr1 67946948 67946971 -214246693 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 206 257 67 76 chr1 67947081 67947186 -214246478 + L3 LINE CR1 1371 1474 -103 524 251 34 29 chr1 67948544 67948719 -214244945 + MIR SINE MIR 14 189 -73 287 261 57 11 chr1 67948901 67948989 -214244675 - MIR SINE MIR -15 247 156 950 180 24 15 chr1 67949368 67949574 -214244090 + MER31A LTR ERV1 276 483 -2 423 52 0 0 chr1 67949575 67949633 -214244031 + (CA)n Simple_repeat Simple_repeat 2 59 0 384 323 110 0 chr1 67949842 67950006 -214243658 - MIR SINE MIR -26 236 55 188 271 102 0 chr1 67950509 67950568 -214243096 + MIR SINE MIR 111 175 -87 180 246 35 18 chr1 67950795 67950852 -214242812 - MIR3 SINE MIR 0 208 151 1086 211 78 54 chr1 67952532 67952864 -214240800 + MER2 DNA MER2_type 6 345 0 256 207 161 46 chr1 67953135 67953222 -214240442 - L2 LINE L2 -35 3237 3141 360 250 171 43 chr1 67953257 67953421 -214240243 - MIR SINE MIR 0 262 78 1689 181 7 3 chr1 67953468 67953798 -214239866 - AluJb SINE Alu 0 331 1 241 233 0 17 chr1 67954056 67954116 -214239548 + (TTCTG)n Simple_repeat Simple_repeat 3 61 0 622 215 129 25 chr1 67954331 67954538 -214239126 + AluJb SINE Alu 129 312 0 21 0 0 0 chr1 67954671 67954692 -214238972 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 67954733 67954774 -214238890 + AT_rich Low_complexity Low_complexity 1 41 0 2454 81 0 0 chr1 67955000 67955298 -214238366 - AluSq SINE Alu -11 302 5 349 339 47 18 chr1 67955343 67955514 -214238150 - MIR SINE MIR -50 212 37 312 255 189 13 chr1 67955577 67955730 -214237934 + MIR SINE MIR 28 207 -55 645 106 0 0 chr1 67956982 67957067 -214236597 - AluJ/FLAM SINE Alu -227 85 1 245 287 47 54 chr1 67957132 67957261 -214236403 + L2 LINE L2 3168 3295 -18 234 336 97 32 chr1 67958360 67958607 -214235057 - L2 LINE L2 -342 2972 2710 310 287 49 33 chr1 67959516 67959638 -214234026 - MIR3 SINE MIR -31 177 54 503 337 81 46 chr1 67961030 67961377 -214232287 + L2 LINE L2 2899 3257 -15 219 69 0 0 chr1 67961377 67961406 -214232258 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 295 333 29 10 chr1 67962489 67962591 -214231073 - L2 LINE L2 -11 3261 3158 958 207 50 5 chr1 67963438 67963636 -214230028 + MIR SINE MIR 2 208 -54 2647 29 0 0 chr1 67963637 67963980 -214229684 - L1PA2 LINE L1 -754 5392 5050 6448 20 0 4 chr1 67963980 67964725 -214228939 + L1PA2 LINE L1 5404 6149 -6 760 240 6 11 chr1 67966128 67966307 -214227357 + MER5B DNA MER1_type 1 178 0 308 247 71 0 chr1 67966426 67966511 -214227153 - MIR SINE MIR -91 171 81 917 291 137 35 chr1 67966538 67966999 -214226665 - L2 LINE L2 0 3313 2806 189 0 0 0 chr1 67967014 67967035 -214226629 + (TG)n Simple_repeat Simple_repeat 1 21 0 432 249 48 120 chr1 67967365 67967658 -214226006 + MLT1K LTR MaLR 342 586 -2 354 284 33 56 chr1 67967973 67968163 -214225501 - L1MDa LINE L1 -4891 1324 1209 1815 179 0 0 chr1 67968163 67968453 -214225211 - AluJb SINE Alu -20 292 3 354 284 33 56 chr1 67968453 67968717 -214224947 - L1MDa LINE L1 -5006 1209 940 226 269 0 0 chr1 67969519 67969599 -214224065 - MIR SINE MIR -63 145 73 1017 108 43 95 chr1 67969648 67969879 -214223785 + MLT1B LTR MaLR 1 219 -171 338 286 38 0 chr1 67970159 67970264 -214223400 + LTR33A LTR ERVL 287 395 -128 1399 228 47 41 chr1 67970266 67970730 -214222934 + MLT1C LTR MaLR 1 467 0 397 211 47 23 chr1 67970730 67970858 -214222806 + LTR33A LTR ERVL 393 523 0 186 43 0 0 chr1 67970869 67970892 -214222772 + (CA)n Simple_repeat Simple_repeat 2 24 0 442 336 94 50 chr1 67970996 67971380 -214222284 - L1MC4a LINE L1 -1866 5942 5542 230 234 13 26 chr1 67971812 67971889 -214221775 - LTR33A LTR ERVL -2 521 446 200 111 0 28 chr1 67972048 67972084 -214221580 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 369 0 0 0 chr1 67972117 67972158 -214221506 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 216 182 0 0 chr1 67972665 67972709 -214220955 + CT-rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr1 67973437 67973461 -214220203 + (CAA)n Simple_repeat Simple_repeat 2 25 0 222 295 85 4 chr1 67973988 67974116 -214219548 - MIR SINE MIR -46 216 28 235 235 62 12 chr1 67974172 67974253 -214219411 - HAL1b LINE L1 -883 465 381 412 307 94 53 chr1 67974286 67974715 -214218949 - HAL1b LINE L1 -970 1390 79 270 328 43 52 chr1 67976013 67976129 -214217535 + L2 LINE L2 2910 3024 -248 1872 158 9 90 chr1 67976315 67976336 -214217328 - MLT1B LTR MaLR 0 390 369 1773 207 25 6 chr1 67976336 67976694 -214216970 + MLT1A1 LTR MaLR 1 365 0 1872 158 9 90 chr1 67976694 67976992 -214216672 - MLT1B LTR MaLR -21 369 111 1952 156 3 7 chr1 67976992 67977294 -214216370 - AluSx SINE Alu -11 301 1 1872 158 9 90 chr1 67977294 67977397 -214216267 - MLT1B LTR MaLR -279 111 1 346 310 49 7 chr1 67977437 67977579 -214216085 + MIR SINE MIR 93 240 -22 282 310 30 3 chr1 67977798 67977908 -214215756 - MIR SINE MIR -61 147 41 206 354 31 0 chr1 67978128 67978193 -214215471 - MIR SINE MIR -191 71 5 529 229 117 83 chr1 67978223 67978428 -214215236 + MIR SINE MIR 2 213 -49 208 209 23 0 chr1 67979765 67979808 -214213856 - L2 LINE L2 -5 3308 3265 763 288 47 5 chr1 67980068 67980280 -214213384 + L2 LINE L2 3093 3313 0 1615 169 150 21 chr1 67980324 67980703 -214212961 + MSTA LTR MaLR 1 428 0 4030 187 26 8 chr1 67980703 67981501 -214212163 + MSTA-int LTR MaLR 1 813 -838 3514 144 8 12 chr1 67981513 67982103 -214211561 + MSTA-int LTR MaLR 993 1580 0 2026 128 121 43 chr1 67982103 67982500 -214211164 + MSTA LTR MaLR 1 428 0 360 311 99 22 chr1 67982500 67982722 -214210942 - L2 LINE L2 -41 3272 3034 1323 279 54 46 chr1 67982830 67983609 -214210055 - L2 LINE L2 0 3313 2535 359 182 30 30 chr1 67983623 67983722 -214209942 + L1M4 LINE L1 3472 3570 -2576 553 174 0 0 chr1 67983726 67983818 -214209846 - Tigger7 DNA MER2_type 0 2487 2396 * 2668 182 35 16 chr1 67983817 67984328 -214209336 - Tigger7 DNA MER2_type -1965 522 2 395 308 59 16 chr1 67984329 67984754 -214208910 - L1MEc LINE L1 -4913 1483 1041 * 1819 216 20 5 chr1 67984749 67985188 -214208476 - L1MC3 LINE L1 -1 7784 7339 * 2250 271 90 20 chr1 67985184 67986150 -214207514 - L1MEc LINE L1 -5341 1055 22 863 233 56 62 chr1 67986337 67986625 -214207039 - MLT1A2 LTR MaLR -82 292 7 357 327 48 36 chr1 67987092 67987257 -214206407 - MIR SINE MIR -48 214 48 195 139 0 28 chr1 67987254 67987290 -214206374 + L2 LINE L2 3238 3272 0 * 437 356 69 13 chr1 67987441 67987674 -214205990 + MIR SINE MIR 7 252 -10 385 300 14 21 chr1 67987678 67987818 -214205846 + GA-rich Low_complexity Low_complexity 1 139 0 216 158 0 0 chr1 67987831 67987869 -214205795 + GA-rich Low_complexity Low_complexity 3 40 0 1470 153 131 12 chr1 67987998 67988318 -214205346 + MER46B DNA MER2_type 4 236 0 1547 168 123 53 chr1 67988366 67988848 -214204816 + MER74A LTR ERVL 1 556 -2 288 246 84 78 chr1 67988935 67989102 -214204562 - L2 LINE L2 -213 3059 2892 193 370 85 12 chr1 67989129 67989294 -214204370 + L2 LINE L2 3096 3272 0 973 339 184 19 chr1 67989850 67990765 -214202899 + L2 LINE L2 1771 2836 -478 2302 100 0 3 chr1 67990881 67991182 -214202482 - AluSc SINE Alu -9 300 1 196 308 39 0 chr1 67991401 67991453 -214202211 + L2 LINE L2 3238 3291 -22 364 301 48 7 chr1 67992835 67992981 -214200683 - MIR SINE MIR -11 251 100 348 24 0 0 chr1 67993225 67993266 -214200398 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 215 14 151 chr1 67993599 67993676 -214199988 + MIR SINE MIR 48 134 -128 2359 89 3 10 chr1 67993676 67993980 -214199684 - AluSg SINE Alu -7 303 2 458 215 14 151 chr1 67993980 67994121 -214199543 + MIR SINE MIR 134 236 -26 811 204 105 5 chr1 67995751 67995942 -214197722 + MER63A DNA MER1_type 1 210 0 277 301 86 0 chr1 67996028 67996121 -214197543 + L2 LINE L2 3133 3233 -39 307 304 39 59 chr1 67996283 67996487 -214197177 + LTR67 LTR ERVL 2 201 -356 379 298 139 39 chr1 67996993 67997201 -214196463 - L2 LINE L2 -7 3265 3037 232 317 69 20 chr1 67997412 67997513 -214196151 + L2 LINE L2 3151 3256 -16 252 0 0 0 chr1 67997584 67997612 -214196052 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 772 268 54 8 chr1 67997723 67997962 -214195702 - MIR SINE MIR 0 262 13 235 279 29 0 chr1 67998379 67998447 -214195217 + L3 LINE CR1 1497 1566 -11 1175 203 44 41 chr1 67998448 67998577 -214195087 + MLT1A1 LTR MaLR 1 128 -237 1867 181 42 16 chr1 67998577 67998963 -214194701 - MSTD LTR MaLR 0 396 1 1175 203 44 41 chr1 67998963 67999197 -214194467 + MLT1A1 LTR MaLR 128 365 0 936 286 84 25 chr1 67999482 67999849 -214193815 + MLT1I LTR MaLR 6 394 -15 311 354 51 20 chr1 68000289 68000484 -214193180 - MIR SINE MIR -56 206 6 270 246 51 102 chr1 68000629 68000747 -214192917 + MIR SINE MIR 28 140 -68 182 339 95 21 chr1 68001782 68001971 -214191693 - L2 LINE L2 -845 2469 2267 862 165 0 0 chr1 68002001 68002134 -214191530 - FLAM_C SINE Alu 0 133 1 1702 248 33 31 chr1 68002891 68003435 -214190229 + MER74A LTR ERVL 1 545 -13 821 102 0 0 chr1 68003462 68003598 -214190066 - AluSp/q SINE Alu 0 313 178 332 310 62 7 chr1 68003830 68003975 -214189689 - MIR SINE MIR -13 249 97 411 317 103 70 chr1 68003976 68004522 -214189142 - L2 LINE L2 0 3272 2707 2028 93 7 18 chr1 68004626 68004906 -214188758 - AluSc SINE Alu -20 289 13 189 300 189 33 chr1 68005130 68005220 -214188444 - L2 LINE L2 -5 3308 3205 2376 50 0 4 chr1 68005253 68005565 -214188099 - AluY SINE Alu 0 311 1 244 250 0 26 chr1 68005679 68005755 -214187909 + L2 LINE L2 3154 3227 -86 627 219 99 69 chr1 68006709 68006905 -214186759 - L1MC5 LINE L1 -37 7924 7735 996 198 11 0 chr1 68006905 68007092 -214186572 + MER5A DNA MER1_type 1 189 0 627 219 99 69 chr1 68007092 68007288 -214186376 - L1MC5 LINE L1 -226 7735 7520 633 199 8 30 chr1 68007301 68007670 -214185994 + CT-rich Low_complexity Low_complexity 1 361 0 1446 212 33 23 chr1 68007670 68007972 -214185692 - AluJo SINE Alu -5 307 3 1298 213 97 78 chr1 68008013 68008902 -214184762 - L1MC5 LINE L1 -470 7491 6544 1697 231 48 59 chr1 68009214 68009754 -214183910 + MLT1F LTR MaLR 1 534 -8 1269 291 32 67 chr1 68010037 68012003 -214181661 - L1MC5 LINE L1 -753 5393 4023 392 338 30 93 chr1 68012042 68012344 -214181320 - L2 LINE L2 -76 3196 2914 263 333 51 51 chr1 68012522 68012816 -214180848 + MLT1G1 LTR MaLR 79 372 -177 361 127 101 13 chr1 68012817 68012896 -214180768 + MLT1G1 LTR MaLR 497 582 -13 472 363 78 6 chr1 68012939 68013259 -214180405 - L2 LINE L2 -671 2643 2301 211 296 0 74 chr1 68013266 68013374 -214180290 + MIR SINE MIR 120 219 -43 320 280 167 7 chr1 68013614 68013764 -214179900 + MIR3 SINE MIR 17 190 -18 871 262 13 18 chr1 68014515 68014744 -214178920 + MIR SINE MIR 29 256 -6 309 235 0 78 chr1 68015079 68015181 -214178483 + MIR SINE MIR 98 191 -71 227 323 129 0 chr1 68015406 68015499 -214178165 + MIR SINE MIR 25 129 -79 21 0 0 0 chr1 68016052 68016073 -214177591 + AT_rich Low_complexity Low_complexity 1 21 0 2148 87 40 0 chr1 68017210 68017487 -214176177 + AluSg SINE Alu 16 303 -7 330 269 156 66 chr1 68017651 68018016 -214175648 + L1ME4a LINE L1 5722 6119 -2 817 344 117 29 chr1 68018257 68019281 -214174383 - L2 LINE L2 -1154 2160 1047 741 208 50 37 chr1 68019381 68019622 -214174042 + L1ME3A LINE L1 5925 6168 -2 433 308 43 43 chr1 68019757 68019965 -214173699 - MIR SINE MIR -4 258 51 180 241 24 96 chr1 68020758 68020841 -214172823 - L3 LINE CR1 -2 1575 1499 195 100 0 0 chr1 68021305 68021335 -214172329 + (T)n Simple_repeat Simple_repeat 1 30 0 500 261 186 53 chr1 68022793 68022889 -214170775 + LTR33 LTR ERVL 3 85 -436 1652 176 3 40 chr1 68022889 68023190 -214170474 + AluJo SINE Alu 1 290 -22 500 261 186 53 chr1 68023190 68023545 -214170119 + LTR33 LTR ERVL 85 514 -7 442 352 154 15 chr1 68023560 68023949 -214169715 - L1ME LINE L1 -419 5702 5260 182 33 67 0 chr1 68024212 68024242 -214169422 + A-rich Low_complexity Low_complexity 3 34 0 744 326 132 6 chr1 68024569 68024932 -214168732 + L2 LINE L2 2597 3001 -312 2821 87 5 12 chr1 68025085 68025497 -214168167 + MLT2A1 LTR ERVL 1 409 -35 359 50 89 10 chr1 68025502 68025603 -214168061 + (TA)n Simple_repeat Simple_repeat 2 110 0 929 116 30 0 chr1 68025610 68025774 -214167890 - Tigger1 DNA MER2_type -54 2364 2196 24 0 0 0 chr1 68025774 68025798 -214167866 + AT_rich Low_complexity Low_complexity 1 24 0 486 107 31 25 chr1 68025806 68025965 -214167699 + (TA)n Simple_repeat Simple_repeat 2 161 0 415 114 68 0 chr1 68025981 68026271 -214167393 + (TA)n Simple_repeat Simple_repeat 1 309 0 290 130 19 16 chr1 68026282 68026346 -214167318 + MLT2B1 LTR ERVL 399 520 0 268 239 340 21 chr1 68026642 68026880 -214166784 + L2 LINE L2 2991 3304 -9 5037 121 18 5 chr1 68027085 68027915 -214165749 - Tigger1 DNA MER2_type 0 2418 1578 6307 56 0 10 chr1 68027915 68029305 -214164359 - L1PA7 LINE L1 0 6154 4803 214 290 122 28 chr1 68029337 68029444 -214164220 - L3 LINE CR1 -453 1124 1008 400 334 228 19 chr1 68029531 68030013 -214163651 - L3 LINE CR1 -752 825 243 346 255 31 20 chr1 68030532 68030630 -214163034 - MER5A DNA MER1_type -87 102 4 185 357 10 10 chr1 68030638 68030736 -214162928 - L2 LINE L2 -639 2675 2578 227 227 86 98 chr1 68030863 68030982 -214162682 + MIR3 SINE MIR 35 153 -55 1986 170 89 18 chr1 68030982 68031418 -214162246 + MLT1C LTR MaLR 1 467 0 227 227 86 98 chr1 68031418 68031461 -214162203 + MIR3 SINE MIR 153 195 -13 193 229 0 0 chr1 68032319 68032354 -214161310 + MIR SINE MIR 115 149 -113 578 274 19 33 chr1 68032454 68032666 -214160998 - MIR SINE MIR 0 262 54 274 296 37 28 chr1 68032867 68032975 -214160689 - MER5B DNA MER1_type -61 117 9 416 308 11 76 chr1 68033998 68034183 -214159481 - MIR SINE MIR -50 212 40 381 307 55 31 chr1 68034580 68034743 -214158921 - MIR3 SINE MIR -22 186 20 328 272 88 29 chr1 68035346 68035482 -214158182 + MIR SINE MIR 49 192 -70 2247 112 0 0 chr1 68035488 68035792 -214157872 + AluY SINE Alu 1 304 -7 337 335 79 28 chr1 68036324 68036684 -214156980 + L2 LINE L2 2637 3026 -246 742 262 141 0 chr1 68036690 68036896 -214156768 + MIR SINE MIR 28 262 0 1833 196 97 24 chr1 68037044 68037507 -214156157 + MLT1D LTR MaLR 1 497 -8 208 276 51 41 chr1 68037526 68037624 -214156040 + L2 LINE L2 3215 3313 0 2429 139 28 24 chr1 68037873 68038297 -214155367 - Tigger2a DNA MER2_type -4 430 5 297 292 241 0 chr1 68038907 68039044 -214154620 + MIR SINE MIR 80 249 -13 713 319 4 9 chr1 68039062 68039294 -214154370 - MIR SINE MIR 0 262 32 416 259 222 11 chr1 68040185 68040225 -214153439 + MIR SINE MIR 1 31 -231 1886 149 137 35 chr1 68040225 68040649 -214153015 - MLT1C LTR MaLR 0 467 1 416 259 222 11 chr1 68040649 68040797 -214152867 + MIR SINE MIR 31 229 -33 1199 190 18 13 chr1 68040829 68041116 -214152548 - L1MA5 LINE L1 -26 6277 5991 196 313 62 0 chr1 68041420 68041500 -214152164 + L2 LINE L2 3186 3270 -2 413 307 7 15 chr1 68041573 68041710 -214151954 - MIR SINE MIR -16 246 111 241 279 174 17 chr1 68041722 68041894 -214151770 - MLT1K LTR MaLR -9 579 381 367 299 19 19 chr1 68042243 68042350 -214151314 - MIR SINE MIR -151 111 5 189 260 0 110 chr1 68042526 68042538 -214151126 - L3 LINE CR1 -1 1576 1564 2140 155 17 8 chr1 68042538 68042900 -214150764 + MLT1A1 LTR MaLR 1 365 0 189 260 0 110 chr1 68042900 68042960 -214150704 - L3 LINE CR1 -13 1564 1512 448 362 13 0 chr1 68043023 68043175 -214150489 + MIR SINE MIR 4 157 -105 629 289 124 0 chr1 68043191 68043416 -214150248 - MIR SINE MIR -6 256 4 218 329 0 0 chr1 68043443 68043513 -214150151 + MIR SINE MIR 186 255 -7 335 372 67 72 chr1 68043856 68044232 -214149432 - L2 LINE L2 -7 3265 2892 284 304 71 78 chr1 68044392 68044803 -214148861 - MLT1J2 LTR MaLR -1 449 1 183 167 0 0 chr1 68045404 68045434 -214148230 + MIR SINE MIR 115 144 -64 528 59 0 0 chr1 68045527 68045595 -214148069 + (TCCC)n Simple_repeat Simple_repeat 3 70 0 403 241 26 26 chr1 68046493 68046609 -214147055 - MER20B DNA MER1_type -604 179 64 249 171 0 0 chr1 68046851 68046892 -214146772 + L1PB2 LINE L1 5740 5780 -371 870 85 0 48 chr1 68046895 68047083 -214146581 + (TA)n Simple_repeat Simple_repeat 2 180 0 2077 102 10 3 chr1 68047104 68047407 -214146257 + L1PB2 LINE L1 5845 6149 -2 25 31 0 0 chr1 68047407 68047439 -214146225 + AT_rich Low_complexity Low_complexity 1 32 0 2201 153 40 31 chr1 68048010 68048551 -214145113 + MLT2A2 LTR ERVL 1 552 -2 353 225 70 62 chr1 68048637 68048766 -214144898 - MIR SINE MIR -108 154 25 401 210 0 8 chr1 68048772 68048891 -214144773 + (TA)n Simple_repeat Simple_repeat 1 118 0 2346 139 2 40 chr1 68049048 68049451 -214144213 - MLT1B LTR MaLR -2 388 1 219 114 0 0 chr1 68049734 68049769 -214143895 + (TG)n Simple_repeat Simple_repeat 2 36 0 278 266 52 17 chr1 68050592 68050712 -214142952 - MIR SINE MIR -65 143 43 195 276 143 9 chr1 68051179 68051284 -214142380 + L2 LINE L2 3194 3312 -1 192 366 119 0 chr1 68051616 68051717 -214141947 - MIR SINE MIR -137 125 13 337 266 135 15 chr1 68052733 68052911 -214140753 - MIR SINE MIR -29 233 36 368 259 97 27 chr1 68053268 68053453 -214140211 + MLT1K LTR MaLR 389 586 -2 201 121 0 0 chr1 68054043 68054076 -214139588 + (TAA)n Simple_repeat Simple_repeat 3 35 0 445 314 26 0 chr1 68054420 68054576 -214139088 + MIR SINE MIR 55 214 -48 211 273 0 39 chr1 68055320 68055397 -214138267 + CT-rich Low_complexity Low_complexity 2 75 0 2547 267 88 41 chr1 68055557 68058414 -214135250 - L1ME3A LINE L1 -20 6945 3907 472 174 0 0 chr1 68058483 68058552 -214135112 + MER75B DNA T2_type 1 69 -174 1233 109 0 21 chr1 68059137 68059329 -214134335 + MER75B DNA T2_type 51 238 -5 1358 268 71 18 chr1 68059332 68060018 -214133646 - L1ME3A LINE L1 -3137 3804 3082 829 328 30 21 chr1 68060125 68060463 -214133201 + LTR16C LTR ERVL 149 489 -2 512 263 26 0 chr1 68060465 68060617 -214133047 - L1ME3A LINE L1 -3860 3081 2926 359 205 24 0 chr1 68060989 68061072 -214132592 - L1ME3A LINE L1 -4572 2369 2285 1023 262 70 9 chr1 68061238 68061566 -214132098 - L1ME3 LINE L1 -168 5994 5647 442 263 143 44 chr1 68061576 68061948 -214131716 - L1ME3A LINE L1 -4619 2322 1814 21 0 0 0 chr1 68062122 68062143 -214131521 + AT_rich Low_complexity Low_complexity 1 21 0 241 254 112 35 chr1 68062177 68062374 -214131290 - L1ME3A LINE L1 -4919 1504 1293 533 266 21 72 chr1 68062885 68063122 -214130542 - MLT1L LTR MaLR -361 254 30 219 299 103 37 chr1 68063218 68063325 -214130339 - MIR SINE MIR -148 114 1 617 196 36 80 chr1 68064868 68065092 -214128572 - L1MD2 LINE L1 0 6359 6146 270 0 0 0 chr1 68065092 68065122 -214128542 + (TG)n Simple_repeat Simple_repeat 2 31 0 1204 233 160 18 chr1 68065452 68065795 -214127869 + MSTD LTR MaLR 1 392 -4 220 300 120 40 chr1 68066029 68066179 -214127485 - MIR SINE MIR -66 142 20 773 313 9 4 chr1 68066224 68066451 -214127213 - MIR SINE MIR 0 262 35 1785 165 3 10 chr1 68066469 68066766 -214126898 - AluJb SINE Alu -17 295 1 384 248 33 33 chr1 68066866 68066987 -214126677 + Charlie8 DNA MER1_type 66 186 -2231 192 338 15 15 chr1 68067086 68067154 -214126510 + MIR SINE MIR 11 78 -184 1584 255 70 34 chr1 68067262 68067737 -214125927 + MLT1H1 LTR MaLR 54 545 -10 2081 134 3 0 chr1 68068359 68068651 -214125013 + AluSx SINE Alu 1 293 -19 1849 152 7 3 chr1 68068779 68069068 -214124596 - AluJo SINE Alu -16 296 7 199 301 130 27 chr1 68069152 68069298 -214124366 + L2 LINE L2 2914 3074 -198 364 340 13 33 chr1 68069793 68069914 -214123750 + MIR SINE MIR 6 126 -136 2335 67 0 3 chr1 68069914 68070267 -214123397 - AluY SINE Alu 0 352 1 364 340 13 33 chr1 68070267 68070297 -214123367 + MIR SINE MIR 126 155 -107 378 376 48 55 chr1 68071369 68071659 -214122005 + L2 LINE L2 2983 3270 -2 283 376 7 7 chr1 68071719 68071860 -214121804 - MIR SINE MIR -13 249 109 5267 95 2 28 chr1 68072130 68072923 -214120741 + L1PA14 LINE L1 5389 6161 0 497 274 13 7 chr1 68072981 68073134 -214120530 - L1MA10 LINE L1 -1 6333 6180 875 244 70 11 chr1 68073140 68073411 -214120253 - L1M4 LINE L1 -2007 4139 3853 535 275 48 19 chr1 68073764 68073971 -214119693 - L1ME1 LINE L1 -130 6036 5824 334 242 48 48 chr1 68075357 68075481 -214118183 + L2 LINE L2 3185 3308 -5 549 335 56 59 chr1 68075980 68076317 -214117347 - L2 LINE L2 0 3272 2937 314 233 111 26 chr1 68076679 68076793 -214116871 - MIR SINE MIR -34 174 51 312 326 69 7 chr1 68076804 68076948 -214116716 + MIR SINE MIR 1 153 -109 310 335 18 24 chr1 68078370 68078540 -214115124 - MIR3 SINE MIR -21 187 19 354 296 163 17 chr1 68078671 68078843 -214114821 - MIR SINE MIR -54 208 12 495 340 7 0 chr1 68078874 68079015 -214114649 - L3 LINE CR1 -15 1562 1421 330 358 73 0 chr1 68079140 68079249 -214114415 - L2 LINE L2 0 3272 3156 402 356 31 11 chr1 68079787 68079978 -214113686 - MIR SINE MIR -48 214 20 360 257 99 0 chr1 68080065 68080166 -214113498 + MER69 DNA AcHobo 36 146 -2380 239 250 88 0 chr1 68080161 68080229 -214113435 + MER69 DNA AcHobo 2441 2514 -12 * 1457 208 31 10 chr1 68080274 68080563 -214113101 - AluJb SINE Alu -17 295 1 489 261 0 17 chr1 68080563 68080678 -214112986 - L2 LINE L2 -10 3303 3191 594 328 56 22 chr1 68080758 68081026 -214112638 - LTR33 LTR ERVL -244 277 1 428 340 6 19 chr1 68081944 68082106 -214111558 - MIR3 SINE MIR -25 183 24 183 193 102 114 chr1 68082590 68082678 -214110986 + MIR3 SINE MIR 13 99 -109 23 86 0 0 chr1 68084058 68084116 -214109548 + AT_rich Low_complexity Low_complexity 1 58 0 2351 87 13 0 chr1 68084179 68084479 -214109185 - AluY SINE Alu -7 304 1 2977 169 16 32 chr1 68085099 68086225 -214107439 + L1PB4 LINE L1 4693 5803 -353 326 156 16 0 chr1 68086246 68086310 -214107354 + (TA)n Simple_repeat Simple_repeat 1 65 0 2017 173 8 0 chr1 68086317 68086687 -214106977 + L1PB4 LINE L1 5782 6154 -2 231 49 0 0 chr1 68087444 68087485 -214106179 - AluY SINE Alu 0 299 259 1730 68 0 22 chr1 68087486 68087708 -214105956 - AluY SINE Alu -94 217 1 2041 335 68 28 chr1 68087955 68089182 -214104482 + ERVL LTR ERVL 4075 5350 -414 1922 132 3 0 chr1 68089693 68089989 -214103675 - L1PA16 LINE L1 0 6166 5870 1355 226 84 42 chr1 68091068 68091656 -214102008 + MLT1E3 LTR MaLR 1 621 -3 318 316 138 29 chr1 68091706 68091880 -214101784 + MIR SINE MIR 49 241 -21 345 283 88 0 chr1 68092631 68092744 -214100920 + MIR SINE MIR 114 236 -26 306 0 0 0 chr1 68093070 68093104 -214100560 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 854 289 97 34 chr1 68093167 68093547 -214100117 - L2 LINE L2 0 3313 2910 383 345 0 14 chr1 68093716 68093858 -214099806 - L2 LINE L2 -7 3306 3167 288 130 0 0 chr1 68093974 68094020 -214099644 + (TTC)n Simple_repeat Simple_repeat 3 48 0 740 135 0 30 chr1 68094024 68094157 -214099507 - AluJo SINE Alu -2 310 182 * 749 145 0 38 chr1 68094152 68094283 -214099381 - AluJo SINE Alu -170 142 17 222 325 105 18 chr1 68094935 68095049 -214098615 + MIR SINE MIR 23 146 -116 349 150 37 63 chr1 68096629 68096743 -214096921 - MLT1H1 LTR MaLR -294 296 187 1182 279 81 20 chr1 68096792 68096884 -214096780 - L1MEc LINE L1 -3398 2984 2899 2195 118 131 8 chr1 68096884 68097265 -214096399 + MSTA LTR MaLR 1 428 0 1182 279 81 20 chr1 68097265 68098506 -214095158 - L1MEc LINE L1 -3483 2899 1604 369 277 0 9 chr1 68098519 68098631 -214095033 + (TA)n Simple_repeat Simple_repeat 2 112 0 499 301 82 61 chr1 68098633 68098912 -214094752 - L1MEc LINE L1 -4927 1457 1173 306 289 8 8 chr1 68099859 68099987 -214093677 - L1MEc LINE L1 -5980 392 265 26 30 0 0 chr1 68100277 68100310 -214093354 + AT_rich Low_complexity Low_complexity 1 33 0 302 283 153 46 chr1 68100464 68100810 -214092854 - L1M4 LINE L1 -3303 2843 2461 252 0 0 0 chr1 68100921 68100949 -214092715 + (TAA)n Simple_repeat Simple_repeat 1 28 0 298 315 39 10 chr1 68101902 68102087 -214091577 - MIR SINE MIR -54 208 18 297 306 24 16 chr1 68102173 68102297 -214091367 - L2 LINE L2 -212 3060 2936 591 247 128 59 chr1 68102417 68102895 -214090769 + MLT1J LTR MaLR 1 511 0 364 262 175 29 chr1 68103684 68103890 -214089774 + MIR SINE MIR 20 255 -7 194 296 45 34 chr1 68104688 68104776 -214088888 - L3 LINE CR1 -73 1504 1416 1976 172 108 7 chr1 68104849 68105273 -214088391 - MLT1C LTR MaLR 0 467 1 285 322 200 0 chr1 68105353 68105533 -214088131 + MIR SINE MIR 37 252 -10 215 320 97 19 chr1 68105598 68105701 -214087963 - L2 LINE L2 0 3272 3162 406 298 123 0 chr1 68105832 68106003 -214087661 - MIR SINE MIR -8 254 63 876 204 92 29 chr1 68106911 68107117 -214086547 + MER20 DNA MER1_type 1 219 0 236 388 0 8 chr1 68107142 68107266 -214086398 + MIR SINE MIR 30 153 -55 183 296 0 0 chr1 68107676 68107720 -214085944 + L2 LINE L2 3221 3264 -8 225 0 0 0 chr1 68107965 68107990 -214085674 + (T)n Simple_repeat Simple_repeat 1 25 0 223 313 92 38 chr1 68108098 68108229 -214085435 + L2 LINE L2 3129 3266 -6 221 188 0 62 chr1 68108305 68108353 -214085311 + L2 LINE L2 3228 3272 0 477 319 19 28 chr1 68108820 68109036 -214084628 + MIR SINE MIR 49 262 0 208 291 152 42 chr1 68109345 68109510 -214084154 + MIR3 SINE MIR 19 201 -7 236 332 192 28 chr1 68109918 68110168 -214083496 + L3 LINE CR1 1287 1577 0 199 297 116 65 chr1 68110197 68110352 -214083312 - MIR SINE MIR -10 252 90 334 296 28 62 chr1 68110811 68110987 -214082677 - MIR SINE MIR -6 256 87 1217 226 53 45 chr1 68111037 68111506 -214082158 + MER113 DNA MER1_type? 6 478 -43 2214 62 41 10 chr1 68111777 68112067 -214081597 - AluY SINE Alu -12 299 1 244 314 78 33 chr1 68112345 68112498 -214081166 - L2 LINE L2 -1354 1960 1801 539 333 194 17 chr1 68112953 68113356 -214080308 - L3 LINE CR1 -123 1454 981 * 880 272 16 12 chr1 68113354 68113597 -214080067 - MIR SINE MIR -1 261 18 252 246 35 0 chr1 68113724 68113781 -214079883 - MIR SINE MIR -91 171 113 200 297 0 40 chr1 68113786 68113860 -214079804 - L2 LINE L2 -11 3261 3191 454 293 40 11 chr1 68116346 68116520 -214077144 - MIR SINE MIR -6 256 78 553 320 44 16 chr1 68116928 68117178 -214076486 + MIR SINE MIR 6 262 0 387 0 0 0 chr1 68118462 68118505 -214075159 + (TA)n Simple_repeat Simple_repeat 2 44 0 590 262 86 49 chr1 68118647 68118891 -214074773 + MIR SINE MIR 8 260 -2 198 71 0 0 chr1 68118997 68119025 -214074639 + (TG)n Simple_repeat Simple_repeat 2 29 0 352 324 19 63 chr1 68119297 68119504 -214074160 + MIR SINE MIR 20 217 -45 371 297 84 0 chr1 68119651 68119806 -214073858 - L2 LINE L2 -939 2375 2208 191 237 34 51 chr1 68120147 68120206 -214073458 - MIR SINE MIR -57 151 94 180 276 35 0 chr1 68121042 68121100 -214072564 - MIR SINE MIR -64 144 85 196 344 25 51 chr1 68121330 68121487 -214072177 + L2 LINE L2 3133 3285 -28 195 42 0 0 chr1 68121534 68121558 -214072106 + (AACTG)n Simple_repeat Simple_repeat 1 24 0 236 277 0 0 chr1 68121785 68121850 -214071814 + MIR SINE MIR 197 261 -1 1107 119 0 7 chr1 68122169 68122320 -214071344 + AluY SINE Alu 1 150 -161 572 81 61 0 chr1 68122427 68122526 -214071138 + AluSg/x SINE Alu 194 298 -14 8041 69 11 10 chr1 68122877 68123947 -214069717 - MER11C LTR ERVK 0 1071 1 206 347 149 29 chr1 68124040 68124383 -214069281 + L2 LINE L2 2804 3187 -85 2010 104 59 11 chr1 68124609 68124896 -214068768 - AluY SINE Alu -10 301 1 25 0 0 0 chr1 68124899 68124924 -214068740 + AT_rich Low_complexity Low_complexity 1 25 0 2015 156 0 0 chr1 68124924 68125219 -214068445 - AluSx SINE Alu -17 295 1 479 348 70 17 chr1 68125521 68125751 -214067913 + MIR SINE MIR 8 249 -13 350 314 36 70 chr1 68125884 68126116 -214067548 + MIR SINE MIR 5 226 -36 230 208 0 125 chr1 68126491 68126563 -214067101 + L2 LINE L2 3250 3312 -1 470 375 13 0 chr1 68127322 68127474 -214066190 - L2 LINE L2 -2 3270 3117 269 357 10 0 chr1 68127577 68127675 -214065989 - L2 LINE L2 -1 3312 3214 464 365 143 17 chr1 68128328 68128805 -214064859 + L2 LINE L2 2413 2949 -365 321 254 114 59 chr1 68129050 68129286 -214064378 + LTR16A1 LTR ERVL 209 457 0 279 351 81 9 chr1 68129442 68129553 -214064111 + L2 LINE L2 3153 3271 -1 232 224 0 0 chr1 68129688 68129737 -214063927 + L2 LINE L2 3265 3313 0 182 152 0 87 chr1 68130623 68130669 -214062995 - L2 LINE L2 -1 3312 3271 608 238 26 110 chr1 68130863 68131090 -214062574 + MIR SINE MIR 6 213 -49 2318 93 3 10 chr1 68131119 68131419 -214062245 - AluSp SINE Alu -15 298 1 353 271 49 8 chr1 68131451 68131573 -214062091 + MIR SINE MIR 71 197 -65 279 314 161 17 chr1 68131714 68131832 -214061832 - L2 LINE L2 -4 3268 3134 195 258 81 0 chr1 68131926 68131988 -214061676 - MIR SINE MIR -61 147 81 242 285 195 32 chr1 68132176 68132299 -214061365 - MIR SINE MIR -48 214 72 504 284 84 37 chr1 68132967 68133182 -214060482 - MIR SINE MIR -35 227 3 1014 32 0 0 chr1 68133665 68133788 -214059876 - L1PA5 LINE L1 0 6154 6032 463 276 138 17 chr1 68134390 68134622 -214059042 + MER57A LTR ERV1 144 403 0 783 244 5 36 chr1 68134828 68135021 -214058643 - MER5A DNA MER1_type -2 187 1 382 379 97 0 chr1 68135021 68135227 -214058437 + MIR SINE MIR 32 257 -5 397 335 38 13 chr1 68135404 68135562 -214058102 - MER5B DNA MER1_type -16 162 1 668 201 45 50 chr1 68135604 68135783 -214057881 + MER5B DNA MER1_type 1 178 0 186 305 61 0 chr1 68136182 68136264 -214057400 - MIR SINE MIR -108 154 68 1410 191 2 19 chr1 68138402 68138782 -214054882 - MLT2B1 LTR ERVL -53 462 1 1391 134 20 12 chr1 68138782 68139036 -214054628 - ERVL-B1 LTR ERVL -7 5757 5502 425 101 77 18 chr1 68139040 68139209 -214054455 + (TA)n Simple_repeat Simple_repeat 2 180 0 2294 152 42 3 chr1 68139312 68139793 -214053871 - ERVL-B1 LTR ERVL -273 5491 4964 197 225 0 0 chr1 68139807 68139847 -214053817 - L2 LINE L2 -7 3265 3226 1200 124 40 0 chr1 68139979 68140181 -214053483 - ERVL-B1 LTR ERVL -789 4975 4766 1398 171 72 54 chr1 68140191 68140276 -214053388 - MLT2B1 LTR ERVL -178 342 260 2097 126 13 0 chr1 68140276 68140577 -214053087 + AluY SINE Alu 1 305 -6 1398 171 72 54 chr1 68140577 68140825 -214052839 - MLT2B1 LTR ERVL -260 260 3 213 287 64 21 chr1 68141382 68141476 -214052188 + L3 LINE CR1 400 497 -1080 189 325 63 32 chr1 68141656 68141782 -214051882 + L3 LINE CR1 673 802 -775 2656 234 32 19 chr1 68142153 68142948 -214050716 - L1MEc LINE L1 -3282 2933 2173 1020 275 74 61 chr1 68142955 68143710 -214049954 - L1MEc LINE L1 -4874 1341 752 2366 96 0 3 chr1 68143710 68144013 -214049651 - AluY SINE Alu -9 302 1 1020 275 74 61 chr1 68144013 68144272 -214049392 - L1MEc LINE L1 -5463 752 498 9530 186 55 44 chr1 68144729 68145118 -214048546 + L1MC1 LINE L1 3 386 -6040 2313 103 26 63 chr1 68145118 68145496 -214048168 - THE1B LTR MaLR 0 364 1 11659 94 8 1 chr1 68145496 68147066 -214046598 - THE1B-int LTR MaLR 0 1580 1 1860 171 73 14 chr1 68147066 68147410 -214046254 - THE1B LTR MaLR 0 364 1 9530 186 55 44 chr1 68147410 68148845 -214044819 + L1MC1 LINE L1 386 1866 -4560 2385 45 19 3 chr1 68148845 68149153 -214044511 - L1PA4 LINE L1 0 6155 5843 9530 186 55 44 chr1 68149153 68149713 -214043951 + L1MC1 LINE L1 1866 2418 -4008 10251 214 30 38 chr1 68149782 68151628 -214042036 + L1MC1 LINE L1 2424 4285 -2328 2437 127 58 34 chr1 68151628 68152044 -214041620 + MSTB LTR MaLR 1 426 0 10251 214 30 38 chr1 68152044 68153247 -214040417 + L1MC1 LINE L1 4285 5419 -1194 1504 212 83 21 chr1 68153247 68153620 -214040044 + MSTD LTR MaLR 1 396 0 10251 214 30 38 chr1 68153620 68154804 -214038860 + L1MC1 LINE L1 5419 6612 -1 299 272 43 11 chr1 68154862 68154954 -214038710 + MIR SINE MIR 79 173 -89 411 244 96 9 chr1 68155878 68155993 -214037671 - MIR3 SINE MIR -45 163 39 217 386 75 21 chr1 68156173 68156455 -214037209 - L2 LINE L2 -167 3105 2809 366 316 85 17 chr1 68157211 68157388 -214036276 + MIR SINE MIR 30 218 -44 1983 159 88 25 chr1 68157639 68158047 -214035617 - Tigger2a DNA MER2_type 0 434 1 185 140 0 120 chr1 68158269 68158319 -214035345 - L3 LINE CR1 -788 789 746 889 344 76 9 chr1 68158471 68158921 -214034743 - L3 LINE CR1 -2 1575 1096 8419 233 67 27 chr1 68159225 68160816 -214032848 - L1MDa LINE L1 -2302 4238 2712 2974 101 19 33 chr1 68160816 68161300 -214032364 - L1PA16 LINE L1 -5 6161 5685 8419 233 67 27 chr1 68161300 68161388 -214032276 - L1MDa LINE L1 -3828 2712 2629 180 0 0 0 chr1 68161388 68161408 -214032256 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 8419 233 67 27 chr1 68161408 68163067 -214030597 - L1MDa LINE L1 -3911 2629 692 204 97 0 0 chr1 68163067 68163098 -214030566 + (TG)n Simple_repeat Simple_repeat 1 31 0 8419 233 67 27 chr1 68163098 68163745 -214029919 - L1MDa LINE L1 -5848 692 72 2466 212 31 79 chr1 68163830 68164732 -214028932 + L1M4 LINE L1 4226 5084 -1062 493 239 86 49 chr1 68164947 68165273 -214028391 + HAL1 LINE L1 2015 2352 -155 544 225 197 26 chr1 68165789 68165983 -214027681 - MIR SINE MIR -4 258 34 258 343 74 9 chr1 68166378 68166486 -214027178 + L2 LINE L2 3199 3313 0 280 268 56 45 chr1 68166496 68166675 -214026989 - L1ME LINE L1 -324 5797 5617 660 303 97 22 chr1 68166740 68166991 -214026673 - MLT1J1 LTR MaLR 0 446 150 2805 76 19 3 chr1 68166991 68167358 -214026306 + THE1C LTR MaLR 3 375 0 660 303 97 22 chr1 68167358 68167519 -214026145 - MLT1J1 LTR MaLR -296 150 3 437 0 19 0 chr1 68167655 68167708 -214025956 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 25 83 0 0 chr1 68168223 68168283 -214025381 + AT_rich Low_complexity Low_complexity 1 60 0 348 232 37 0 chr1 68168570 68168652 -214025012 - MLT1J LTR MaLR 0 511 427 1940 143 39 25 chr1 68168652 68169015 -214024649 - THE1C LTR MaLR -7 368 1 379 312 65 93 chr1 68169016 68169433 -214024231 - MLT1J LTR MaLR -80 431 27 7317 36 0 0 chr1 68169434 68170303 -214023361 - L1PA2 LINE L1 -1833 4313 3445 8878 30 0 2 chr1 68170303 68172124 -214021540 + L1PA2 LINE L1 4330 6148 -7 243 0 0 0 chr1 68172128 68172155 -214021509 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 1960 130 0 3 chr1 68172281 68172587 -214021077 - AluSq SINE Alu 0 305 1 238 250 148 33 chr1 68172605 68172849 -214020815 - L1MEd LINE L1 -4955 1164 893 459 250 0 0 chr1 68172906 68173022 -214020642 - L1MC3 LINE L1 0 7785 7670 211 419 76 0 chr1 68173989 68174094 -214019570 + L2 LINE L2 3150 3262 -10 490 335 107 10 chr1 68174928 68175134 -214018530 + MIR SINE MIR 30 255 -7 185 433 0 0 chr1 68175139 68175229 -214018435 + MIR SINE MIR 54 143 -65 222 284 14 0 chr1 68175492 68175566 -214018098 + L3b LINE CR1 1147 1221 -362 24 0 0 0 chr1 68175739 68175763 -214017901 + AT_rich Low_complexity Low_complexity 1 24 0 427 349 89 27 chr1 68175809 68176101 -214017563 + L3b LINE CR1 1271 1580 -3 807 230 55 35 chr1 68176583 68176783 -214016881 + MER63A DNA MER1_type 2 205 -5 210 313 0 30 chr1 68176904 68176971 -214016693 + L2 LINE L2 3206 3270 -2 201 132 0 0 chr1 68177213 68177251 -214016413 + (T)n Simple_repeat Simple_repeat 1 38 0 615 232 207 51 chr1 68177256 68177609 -214016055 + MLT1L LTR MaLR 202 609 -6 17329 31 0 8 chr1 68177902 68180027 -214013637 - L1PA3 LINE L1 -1077 5069 2963 7734 24 0 0 chr1 68180027 68181108 -214012556 + L1PA3 LINE L1 5075 6155 0 192 77 0 0 chr1 68181220 68181246 -214012418 + (TC)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr1 68181246 68181274 -214012390 + (TG)n Simple_repeat Simple_repeat 1 28 0 369 0 0 0 chr1 68181668 68181709 -214011955 + (TTA)n Simple_repeat Simple_repeat 2 42 0 355 313 135 6 chr1 68182503 68182666 -214010998 - MIR SINE MIR -12 250 67 197 139 23 0 chr1 68182711 68182754 -214010910 + A-rich Low_complexity Low_complexity 6 49 0 2184 95 7 30 chr1 68183043 68183348 -214010316 + AluSq SINE Alu 1 298 -15 261 329 0 40 chr1 68185046 68185245 -214008419 + (CATA)n Simple_repeat Simple_repeat 1 190 0 210 143 0 0 chr1 68185248 68185283 -214008381 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 614 160 0 25 chr1 68185538 68185657 -214008007 - FRAM SINE Alu -3 173 58 626 347 61 48 chr1 68186028 68186647 -214007017 + L2 LINE L2 2139 2765 -549 1150 287 11 23 chr1 68186684 68187036 -214006628 + LTR33 LTR ERVL 174 521 0 759 166 6 12 chr1 68187470 68187639 -214006025 + CT-rich Low_complexity Low_complexity 4 171 0 415 376 31 0 chr1 68187675 68187869 -214005795 - MIR SINE MIR -56 206 7 283 373 19 12 chr1 68188666 68188827 -214004837 - MER5B DNA MER1_type 0 178 17 469 135 0 52 chr1 68188837 68188933 -214004731 - MLT1I LTR MaLR -10 399 309 746 179 84 26 chr1 68188971 68189161 -214004503 - MLT1I LTR MaLR -199 210 10 27 0 0 0 chr1 68190008 68190035 -214003629 + AT_rich Low_complexity Low_complexity 1 27 0 461 274 51 46 chr1 68190148 68190323 -214003341 + MIR SINE MIR 12 187 -75 21 57 0 0 chr1 68191189 68191224 -214002440 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr1 68191493 68191528 -214002136 + (TG)n Simple_repeat Simple_repeat 2 36 0 408 269 34 8 chr1 68193006 68193125 -214000539 + MIR SINE MIR 69 190 -72 549 255 94 26 chr1 68194085 68194277 -213999387 + MER63A DNA MER1_type 5 209 -1 695 333 25 0 chr1 68194456 68194693 -213998971 - MIR SINE MIR -10 252 10 195 42 0 0 chr1 68195030 68195054 -213998610 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 189 196 0 0 chr1 68197050 68197101 -213996563 + (TAA)n Simple_repeat Simple_repeat 3 53 0 2250 233 59 116 chr1 68197599 68198646 -213995018 + L1ME2 LINE L1 4057 5044 -1102 306 296 50 89 chr1 68198686 68198865 -213994799 - L2 LINE L2 -268 3045 2874 2750 215 41 90 chr1 68198867 68200028 -213993636 + L1ME2 LINE L1 5061 6155 -9 1901 184 34 6 chr1 68200134 68200487 -213993177 - MLT1A1 LTR MaLR 0 365 3 3568 195 77 82 chr1 68200497 68201170 -213992494 - MLT1A1-int LTR MaLR -10 1361 687 2215 99 11 0 chr1 68201170 68201452 -213992212 + AluSx SINE Alu 1 285 -27 3568 195 77 82 chr1 68201452 68201726 -213991938 - MLT1A1-int LTR MaLR -684 687 413 7229 48 0 3 chr1 68201726 68202824 -213990840 - L1PA5 LINE L1 0 6154 5057 3568 195 77 82 chr1 68202824 68203146 -213990518 - MLT1A1-int LTR MaLR -958 413 30 396 240 65 113 chr1 68203146 68203430 -213990234 + MLT1L LTR MaLR 244 509 -2 28 0 0 0 chr1 68204115 68204143 -213989521 + AT_rich Low_complexity Low_complexity 1 28 0 652 259 17 29 chr1 68204184 68204358 -213989306 - MIR3 SINE MIR -3 205 34 334 274 20 20 chr1 68204414 68204560 -213989104 + Charlie7 DNA MER1_type 2465 2610 -2 1759 182 0 10 chr1 68204613 68204909 -213988755 - AluJb SINE Alu -19 293 1 294 339 59 3 chr1 68204930 68205116 -213988548 - L2 LINE L2 -19 3253 2999 246 376 67 13 chr1 68205655 68205804 -213987860 + L2 LINE L2 3116 3272 0 405 219 50 62 chr1 68206003 68206163 -213987501 + L2 LINE L2 3152 3309 -4 203 336 18 9 chr1 68206252 68206365 -213987299 - MIR SINE MIR -118 144 31 925 282 77 80 chr1 68207280 68207651 -213986013 - L2 LINE L2 -271 3042 2660 336 145 0 0 chr1 68207651 68207713 -213985951 + L1MA7 LINE L1 6230 6291 0 925 282 77 80 chr1 68207713 68207941 -213985723 - L2 LINE L2 -653 2660 2433 1654 122 4 0 chr1 68207941 68208178 -213985486 - THE1A LTR MaLR 0 355 118 18699 66 10 0 chr1 68208179 68210513 -213983151 + HERVL-A1 LTR ERVL 3298 5654 0 3038 100 3 0 chr1 68210513 68210921 -213982743 + MLT2A1 LTR ERVL 1 480 -40 276 167 0 0 chr1 68210926 68210998 -213982666 + (TA)n Simple_repeat Simple_repeat 1 72 0 291 40 140 0 chr1 68211001 68211051 -213982613 + MLT2A1 LTR ERVL 388 444 0 559 293 122 41 chr1 68211063 68211333 -213982331 - L2 LINE L2 -904 2410 2119 303 329 33 26 chr1 68211479 68211631 -213982033 + MIR SINE MIR 43 195 -67 323 227 136 27 chr1 68211723 68211833 -213981831 + L2 LINE L2 3191 3312 -1 2355 29 0 0 chr1 68212176 68212454 -213981210 + L1PA2 LINE L1 5878 6155 0 1717 199 12 40 chr1 68213018 68213419 -213980245 - MLT1B LTR MaLR 0 390 1 391 291 56 56 chr1 68213551 68213747 -213979917 + MIR SINE MIR 9 204 -58 218 138 69 0 chr1 68213749 68213807 -213979857 + (TA)n Simple_repeat Simple_repeat 2 63 0 288 307 0 78 chr1 68214439 68214592 -213979072 - MIR SINE MIR -60 202 62 382 289 191 13 chr1 68214914 68215066 -213978598 + MIR SINE MIR 14 192 -70 251 277 0 0 chr1 68215223 68215288 -213978376 + (ATG)n Simple_repeat Simple_repeat 2 66 0 800 290 92 35 chr1 68215631 68216065 -213977599 + L3 LINE CR1 977 1435 -142 22 35 0 0 chr1 68216382 68216411 -213977253 + AT_rich Low_complexity Low_complexity 1 29 0 418 316 70 11 chr1 68217461 68217648 -213976016 - MIR SINE MIR -58 204 7 436 285 36 12 chr1 68217712 68217877 -213975787 + MIR SINE MIR 93 261 -1 446 302 20 7 chr1 68218367 68218516 -213975148 + L3 LINE CR1 1426 1576 -1 263 264 0 0 chr1 68219306 68219378 -213974286 + A-rich Low_complexity Low_complexity 1 72 0 30 59 0 0 chr1 68219470 68219521 -213974143 + AT_rich Low_complexity Low_complexity 1 51 0 284 246 115 49 chr1 68219926 68220048 -213973616 - MIR SINE MIR -110 152 23 1791 178 0 0 chr1 68220237 68220541 -213973123 - AluJb SINE Alu -8 304 1 4874 157 6 21 chr1 68221063 68221868 -213971796 - MER54B LTR ERVL 0 793 1 192 303 30 30 chr1 68222403 68222469 -213971195 + L2 LINE L2 3201 3266 -6 238 309 0 49 chr1 68222482 68222563 -213971101 - MIR SINE MIR -100 108 32 933 255 9 9 chr1 68223042 68223124 -213970540 + MER20 DNA MER1_type 2 83 -136 1537 178 105 15 chr1 68223124 68223466 -213970198 - MLT1A2 LTR MaLR 0 374 2 933 255 9 9 chr1 68223466 68223595 -213970069 + MER20 DNA MER1_type 82 213 -6 239 327 36 45 chr1 68223604 68223714 -213969950 - L3 LINE CR1 -44 1533 1425 224 336 61 38 chr1 68223804 68223935 -213969729 + L2 LINE L2 3180 3313 0 399 376 20 51 chr1 68224756 68225011 -213968653 + L2 LINE L2 2945 3191 -81 515 286 55 22 chr1 68225223 68225405 -213968259 - MIR SINE MIR 0 262 75 434 292 104 70 chr1 68225587 68225943 -213967721 + LTR33 LTR ERVL 3 370 -151 271 248 86 38 chr1 68226037 68226142 -213967522 + MIR SINE MIR 107 216 -46 286 303 13 0 chr1 68226204 68226280 -213967384 - L2 LINE L2 -5 3267 3191 200 271 157 0 chr1 68226796 68226866 -213966798 - L2 LINE L2 -10 3262 3182 742 225 34 38 chr1 68227135 68227344 -213966320 + MER3 DNA MER1_type 1 208 -1 211 371 15 56 chr1 68227925 68228122 -213965542 + L2 LINE L2 2872 3060 -212 378 0 0 0 chr1 68228643 68228685 -213964979 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 7144 26 0 0 chr1 68228685 68229516 -213964148 - L1PA3 LINE L1 -6 6149 5319 271 341 0 49 chr1 68229539 68229662 -213964002 + L2 LINE L2 3184 3300 -13 24 0 0 0 chr1 68229662 68229686 -213963978 + AT_rich Low_complexity Low_complexity 1 24 0 1584 235 95 23 chr1 68231693 68232084 -213961580 + MLT1H LTR MaLR 16 434 -115 308 269 0 43 chr1 68232086 68232179 -213961485 + L1MC4 LINE L1 6614 6702 -1340 332 250 11 33 chr1 68232180 68232272 -213961392 + L1MC4 LINE L1 6614 6703 -1339 307 261 0 22 chr1 68232229 68232321 -213961343 - L1MC4 LINE L1 -1339 6703 6614 * 442 115 0 77 chr1 68232321 68232451 -213961213 + (TATG)n Simple_repeat Simple_repeat 2 121 0 207 129 0 0 chr1 68232451 68232482 -213961182 + MER5A DNA MER1_type 157 187 -2 303 93 0 0 chr1 68232497 68232540 -213961124 + (TATG)n Simple_repeat Simple_repeat 2 44 0 216 237 0 0 chr1 68232657 68232695 -213960969 + (CG)n Simple_repeat Simple_repeat 1 38 0 749 233 44 6 chr1 68232733 68232913 -213960751 - MER5A DNA MER1_type -2 187 1 229 179 18 36 chr1 68232913 68232964 -213960700 + MLT1H LTR MaLR 501 550 -5 190 305 157 40 chr1 68233404 68233653 -213960011 - L2 LINE L2 -2239 1075 798 * 199 274 65 0 chr1 68233633 68233695 -213959969 - MER5B DNA MER1_type -102 76 11 278 387 42 0 chr1 68234101 68234220 -213959444 + L2 LINE L2 3141 3264 -8 23 0 0 0 chr1 68234964 68234987 -213958677 + AT_rich Low_complexity Low_complexity 1 23 0 455 308 93 9 chr1 68236145 68236359 -213957305 - MIR SINE MIR -11 251 20 214 209 119 15 chr1 68236380 68236447 -213957217 + MIR3 SINE MIR 131 204 -4 202 314 117 22 chr1 68236995 68237132 -213956532 + MIR SINE MIR 81 230 -32 245 354 97 46 chr1 68237281 68237476 -213956188 - L2 LINE L2 -2 3270 3066 208 392 24 24 chr1 68237609 68237734 -213955930 + MIR SINE MIR 12 137 -71 427 294 71 16 chr1 68237972 68238156 -213955508 - MER117 DNA MER1_type -1 196 3 427 229 45 55 chr1 68238559 68238645 -213955019 - L1M4 LINE L1 -1716 4430 4345 1458 205 40 74 chr1 68238645 68239049 -213954615 - MLT1B LTR MaLR 0 390 1 427 229 45 55 chr1 68239049 68239083 -213954581 - L1M4 LINE L1 -1801 4345 4312 1504 179 23 57 chr1 68239083 68239339 -213954325 + MER44D DNA MER2_type 1 264 -2227 2232 114 0 0 chr1 68239339 68239645 -213954019 + AluSx SINE Alu 1 306 -6 1504 179 23 57 chr1 68239645 68239739 -213953925 + MER44D DNA MER2_type 264 609 0 427 229 45 55 chr1 68239739 68239818 -213953846 - L1M4 LINE L1 -1834 4312 4232 2053 31 0 0 chr1 68239818 68240075 -213953589 - L1HS LINE L1 -815 5331 5075 * 7234 10 0 0 chr1 68240074 68240889 -213952775 + L1HS LINE L1 5340 6154 -1 744 268 71 0 chr1 68240906 68241145 -213952519 - L1M4 LINE L1 -1904 4242 3987 290 200 137 11 chr1 68241189 68241284 -213952380 + L2 LINE L2 3199 3305 -8 195 42 0 0 chr1 68241466 68241490 -213952174 + (TG)n Simple_repeat Simple_repeat 1 24 0 365 209 70 26 chr1 68242275 68242390 -213951274 - MIR3 SINE MIR -41 167 48 435 299 16 33 chr1 68242496 68242680 -213950984 + MIR SINE MIR 21 201 -61 231 261 0 0 chr1 68242710 68242756 -213950908 - L2 LINE L2 -9 3304 3259 2317 229 138 30 chr1 68243437 68244251 -213949413 + MER63D DNA MER1_type 1 902 -159 238 93 70 0 chr1 68244255 68244298 -213949366 - L1MA4A LINE L1 -6 6297 6252 548 322 22 48 chr1 68244497 68244727 -213948937 - MIR SINE MIR -15 247 24 208 330 60 50 chr1 68244779 68244879 -213948785 + MIR SINE MIR 21 121 -87 264 292 49 56 chr1 68245807 68245951 -213947713 + L2 LINE L2 3171 3313 0 259 271 53 29 chr1 68245952 68246120 -213947544 - MIR3 SINE MIR -63 145 2 249 33 0 0 chr1 68246325 68246355 -213947309 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 211 355 0 50 chr1 68246923 68247044 -213946620 + MIR SINE MIR 58 172 -90 * 600 280 103 5 chr1 68247020 68247234 -213946430 - MIR SINE MIR 0 262 28 185 316 101 38 chr1 68247347 68247505 -213946159 + MIR SINE MIR 67 234 -28 424 90 20 40 chr1 68247881 68247981 -213945683 + (GAAA)n Simple_repeat Simple_repeat 3 100 0 857 262 157 0 chr1 68248368 68248712 -213944952 + MLT1J2 LTR MaLR 9 406 -44 1770 158 79 20 chr1 68248725 68249079 -213944585 + THE1C LTR MaLR 1 375 0 214 158 0 0 chr1 68249244 68249282 -213944382 + CT-rich Low_complexity Low_complexity 3 40 0 561 360 86 23 chr1 68249749 68250191 -213943473 - L2 LINE L2 -2 3311 2842 368 262 35 28 chr1 68250291 68250432 -213943232 - MIR3 SINE MIR -3 205 64 339 295 42 48 chr1 68250556 68250700 -213942964 + MER5A DNA MER1_type 1 145 -44 2727 19 0 10 chr1 68250700 68251014 -213942650 + AluYb8 SINE Alu 1 311 -7 339 295 42 48 chr1 68251014 68251035 -213942629 + MER5A DNA MER1_type 145 165 -24 291 311 119 33 chr1 68251059 68251210 -213942454 + MIR SINE MIR 10 135 -73 21 0 0 0 chr1 68251936 68251957 -213941707 + AT_rich Low_complexity Low_complexity 1 21 0 204 363 0 4 chr1 68252161 68252265 -213941399 + MIR SINE MIR 10 112 -96 1955 165 0 0 chr1 68252411 68252702 -213940962 - AluJb SINE Alu -21 291 1 1367 239 108 18 chr1 68254574 68255018 -213938646 + L1MD1 LINE L1 5598 6081 -161 194 208 0 75 chr1 68255048 68255101 -213938563 + L2 LINE L2 3256 3304 -9 201 138 0 0 chr1 68255514 68255543 -213938121 + (CATA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr1 68255587 68255618 -213938046 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 68256055 68256077 -213937587 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr1 68256671 68256705 -213936959 + (TG)n Simple_repeat Simple_repeat 1 34 0 589 214 173 6 chr1 68256705 68256837 -213936827 - AluJb SINE Alu -31 281 114 189 0 0 0 chr1 68256837 68256858 -213936806 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 589 214 173 6 chr1 68256858 68256893 -213936771 - AluJb SINE Alu -198 114 86 914 213 29 45 chr1 68256902 68257027 -213936637 - L1MB4 LINE L1 -1 6179 6058 2073 122 0 10 chr1 68257027 68257322 -213936342 - AluSx SINE Alu -20 292 1 914 213 29 45 chr1 68257322 68257440 -213936224 - L1MB4 LINE L1 -122 6058 5940 2094 180 70 5 chr1 68257936 68258336 -213935328 + MSTB LTR MaLR 1 426 0 1607 206 51 16 chr1 68258625 68259019 -213934645 + MLT1C LTR MaLR 1 331 -59 1715 121 0 12 chr1 68259021 68259277 -213934387 - AluSg1 SINE Alu -1 308 56 1058 249 43 15 chr1 68259394 68259719 -213933945 - L1MB4 LINE L1 -358 5808 5475 378 341 23 37 chr1 68260036 68260250 -213933414 - MIR SINE MIR -24 238 28 684 281 107 5 chr1 68260694 68260918 -213932746 + MLT1L LTR MaLR 365 611 -4 355 366 40 6 chr1 68260937 68261112 -213932552 - MIR SINE MIR -35 227 47 373 50 33 0 chr1 68261251 68261311 -213932353 + (TA)n Simple_repeat Simple_repeat 2 63 0 295 374 0 19 chr1 68262931 68263005 -213930659 - L2 LINE L2 -5 3267 3194 1863 172 37 6 chr1 68263005 68263359 -213930305 + MLT1A1 LTR MaLR 1 365 0 295 374 0 19 chr1 68263359 68263391 -213930273 - L2 LINE L2 -78 3194 3163 1591 192 19 0 chr1 68263418 68263689 -213929975 - AluJo SINE Alu -30 282 7 229 300 130 0 chr1 68264183 68264283 -213929381 + MIR3 SINE MIR 72 184 -24 1287 195 13 29 chr1 68264907 68265214 -213928450 - L1MB7 LINE L1 -2 6680 6379 2674 234 98 1 chr1 68265216 68265991 -213927673 - L1MB7 LINE L1 -1332 5312 4463 384 22 0 0 chr1 68265991 68266036 -213927628 + (TG)n Simple_repeat Simple_repeat 2 46 0 5149 221 95 66 chr1 68266048 68269071 -213924593 - L1MB7 LINE L1 -3433 3211 16 1939 155 13 10 chr1 68269672 68269856 -213923808 - AluJb SINE Alu 0 312 125 528 16 0 0 chr1 68269856 68269917 -213923747 + (TG)n Simple_repeat Simple_repeat 2 62 0 1939 155 13 10 chr1 68269917 68270042 -213923622 - AluJb SINE Alu -187 125 2 22 35 0 0 chr1 68270045 68270074 -213923590 + AT_rich Low_complexity Low_complexity 1 29 0 198 355 41 25 chr1 68270193 68270314 -213923350 + MIR3 SINE MIR 62 184 -24 419 125 14 0 chr1 68270485 68270557 -213923107 + (CA)n Simple_repeat Simple_repeat 2 74 0 227 213 21 0 chr1 68270557 68270604 -213923060 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 1746 178 14 3 chr1 68270623 68270915 -213922749 - AluJo SINE Alu -14 298 4 442 309 6 11 chr1 68271804 68271985 -213921679 + L1ME LINE L1 1605 1784 -4612 1782 240 87 35 chr1 68271989 68273157 -213920507 + L1ME LINE L1 1834 3028 -3187 504 265 97 21 chr1 68273169 68273407 -213920257 + L1ME LINE L1 5582 5837 -396 10964 204 67 20 chr1 68273419 68276920 -213916744 + L1MB3 LINE L1 21 3720 -2662 1184 219 21 35 chr1 68276920 68277208 -213916456 + AluJo SINE Alu 5 288 -14 10964 204 67 20 chr1 68277208 68277532 -213916132 + L1MB3 LINE L1 3720 4027 -2355 966 178 6 23 chr1 68277535 68277709 -213915955 + MER6 DNA MER2_type 39 209 -656 281 47 23 0 chr1 68277709 68277752 -213915912 + (TG)n Simple_repeat Simple_repeat 2 45 0 3375 212 38 35 chr1 68277803 68278588 -213915076 + L1MB3 LINE L1 4643 5424 -995 2183 124 0 0 chr1 68278588 68278886 -213914778 - AluSq SINE Alu -15 298 1 3375 212 38 35 chr1 68278886 68279180 -213914484 + L1MB3 LINE L1 5424 5724 -695 212 0 36 0 chr1 68279180 68279208 -213914456 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 3375 212 38 35 chr1 68279208 68279409 -213914255 + L1MB3 LINE L1 5724 5923 -496 2224 154 53 22 chr1 68279457 68279585 -213914079 + L1MB3 LINE L1 5904 6027 -392 329 62 21 0 chr1 68279585 68279633 -213914031 + (CA)n Simple_repeat Simple_repeat 2 50 0 2224 154 53 22 chr1 68279633 68279997 -213913667 + L1MB3 LINE L1 6027 6411 -8 299 22 0 44 chr1 68280771 68280816 -213912848 + (ATG)n Simple_repeat Simple_repeat 3 45 0 794 59 0 0 chr1 68281369 68281471 -213912193 - L1PA11 LINE L1 -370 5793 5692 2741 87 0 11 chr1 68281473 68281851 -213911813 + L1PA11 LINE L1 5798 6171 -3 433 296 148 15 chr1 68281981 68282184 -213911480 + MIR SINE MIR 21 250 -12 187 377 50 38 chr1 68282395 68282634 -213911030 + L2 LINE L2 2606 2847 -467 21 57 0 0 chr1 68283044 68283079 -213910585 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 68283505 68283533 -213910131 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 68283814 68283838 -213909826 + AT_rich Low_complexity Low_complexity 1 24 0 262 268 42 63 chr1 68283924 68284066 -213909598 + MIR SINE MIR 81 219 -43 30 0 0 0 chr1 68285014 68285044 -213908620 + AT_rich Low_complexity Low_complexity 1 30 0 247 331 78 81 chr1 68285044 68285328 -213908336 - L2 LINE L2 -55 3217 2935 279 358 126 29 chr1 68285386 68285766 -213907898 - L2 LINE L2 -461 2853 2437 376 330 18 0 chr1 68285818 68285930 -213907734 + L2 LINE L2 3200 3313 0 272 299 9 28 chr1 68285934 68286041 -213907623 - L2 LINE L2 -915 2399 2295 182 217 0 33 chr1 68286042 68286102 -213907562 + (CGTG)n Simple_repeat Simple_repeat 1 58 0 302 257 14 0 chr1 68286696 68286770 -213906894 + MER117 DNA MER1_type 118 192 -5 444 355 64 9 chr1 68286844 68287064 -213906600 - L3 LINE CR1 -60 1517 1286 204 333 128 20 chr1 68287321 68287423 -213906241 - L2 LINE L2 -1 3312 3200 27986 99 12 3 chr1 68287792 68288269 -213905395 - L1PA7 LINE L1 -9 6460 5989 2511 63 3 0 chr1 68288269 68288572 -213905092 - AluSp SINE Alu -9 304 1 27986 99 12 3 chr1 68288572 68293068 -213900596 - L1PA7 LINE L1 -480 5989 1462 23 33 0 0 chr1 68293446 68293476 -213900188 + AT_rich Low_complexity Low_complexity 1 30 0 329 296 30 30 chr1 68293933 68294068 -213899596 + MLT1I LTR MaLR 85 219 -190 464 349 16 11 chr1 68295091 68295280 -213898384 + MIR3 SINE MIR 16 205 -3 233 253 91 143 chr1 68295301 68295455 -213898209 + MIR3 SINE MIR 60 205 -3 641 281 66 60 chr1 68295735 68296172 -213897492 - MLT1K LTR MaLR -47 541 102 385 268 32 49 chr1 68296368 68296491 -213897173 + L2 LINE L2 3193 3313 0 * 401 265 20 0 chr1 68296488 68296590 -213897074 + MIR SINE MIR 151 254 -8 800 302 48 0 chr1 68296923 68297171 -213896493 - MIR SINE MIR 0 262 3 1670 186 56 58 chr1 68297789 68298288 -213895376 + LTR1B LTR ERV1 1 498 -328 209 255 43 0 chr1 68299440 68299487 -213894177 + L2 LINE L2 3204 3252 -20 189 107 0 0 chr1 68299974 68300002 -213893662 + (CACTC)n Simple_repeat Simple_repeat 1 28 0 679 163 81 91 chr1 68300840 68300968 -213892696 + MER3 DNA MER1_type 2 129 -80 2356 79 3 10 chr1 68300968 68301271 -213892393 - AluY SINE Alu -10 301 1 679 163 81 91 chr1 68301271 68301351 -213892313 + MER3 DNA MER1_type 129 208 -1 2317 105 0 3 chr1 68301898 68302203 -213891461 + AluSx SINE Alu 1 304 -8 186 103 0 0 chr1 68302711 68302740 -213890924 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 585 301 31 21 chr1 68303391 68303584 -213890080 - MIR SINE MIR -10 252 58 182 216 0 0 chr1 68303967 68304004 -213889660 - MIR SINE MIR 0 262 226 240 333 97 11 chr1 68304032 68304125 -213889539 - MIR SINE MIR -90 118 23 311 282 59 0 chr1 68305710 68305795 -213887869 - MER5A DNA MER1_type -50 139 50 273 350 50 7 chr1 68305950 68306090 -213887574 - MIR SINE MIR -116 146 1 283 264 282 0 chr1 68306455 68306565 -213887099 - MIR SINE MIR -42 220 80 468 281 236 10 chr1 68306787 68307075 -213886589 - LTR16A LTR ERVL 0 450 98 277 179 200 11 chr1 68308325 68308420 -213885244 - L2 LINE L2 -11 3302 3190 222 320 0 39 chr1 68308557 68308635 -213885029 + L2 LINE L2 3239 3313 0 362 275 108 17 chr1 68308934 68309054 -213884610 - L2 LINE L2 -1 3271 3141 359 318 55 40 chr1 68309078 68309279 -213884385 - MIR SINE MIR -48 214 11 430 267 164 31 chr1 68309349 68309544 -213884120 + MIR SINE MIR 32 252 -10 285 330 0 19 chr1 68310335 68310438 -213883226 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 312 233 150 15 chr1 68310585 68310718 -213882946 - MIR SINE MIR -8 254 104 21 0 0 0 chr1 68311059 68311080 -213882584 + AT_rich Low_complexity Low_complexity 1 21 0 192 97 0 0 chr1 68311106 68311137 -213882527 + L2 LINE L2 3280 3310 -3 600 266 27 16 chr1 68311366 68311550 -213882114 - MLT1J2 LTR MaLR 0 450 265 500 323 48 26 chr1 68311785 68312015 -213881649 - MIR SINE MIR -12 250 10 1301 190 26 0 chr1 68312423 68312691 -213880973 + L1MB7 LINE L1 5910 6184 0 306 307 74 35 chr1 68313087 68313289 -213880375 + MIR SINE MIR 24 233 -29 186 207 207 0 chr1 68313278 68313336 -213880328 + L2 LINE L2 3244 3313 0 * 192 366 98 8 chr1 68313583 68313706 -213879958 + L2 LINE L2 2927 3060 -212 22 0 0 0 chr1 68314175 68314197 -213879467 + AT_rich Low_complexity Low_complexity 1 22 0 214 309 21 52 chr1 68314448 68314545 -213879119 - MIR SINE MIR -97 111 18 238 309 138 0 chr1 68315138 68315290 -213878374 - MIR SINE MIR -27 235 63 192 180 20 20 chr1 68315395 68315445 -213878219 - L2 LINE L2 0 3313 3264 535 253 143 72 chr1 68315846 68315950 -213877714 - MIR SINE MIR -8 254 159 1999 143 0 3 chr1 68315950 68316237 -213877427 - AluSx SINE Alu -26 286 1 535 253 143 72 chr1 68316237 68316369 -213877295 - MIR SINE MIR -103 159 1 335 358 47 27 chr1 68316379 68316527 -213877137 - L2 LINE L2 -21 3251 3101 1760 165 43 70 chr1 68317319 68317718 -213875946 + MLT1B LTR MaLR 3 390 0 246 105 0 0 chr1 68317753 68317791 -213875873 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 275 339 55 44 chr1 68317804 68317987 -213875677 - MIR SINE MIR -50 212 28 314 283 176 24 chr1 68319161 68319297 -213874367 + MIR3 SINE MIR 4 158 -61 450 284 130 19 chr1 68319975 68320190 -213873474 - MIR SINE MIR -1 261 23 7271 48 6 0 chr1 68320291 68321350 -213872314 - L1PA5 LINE L1 -11 6143 5083 659 44 0 0 chr1 68321350 68321440 -213872224 + L1PA5 LINE L1 4976 5065 -1081 192 125 0 0 chr1 68322474 68322506 -213871158 + (CAGAGA)n Simple_repeat Simple_repeat 5 36 0 1978 101 4 14 chr1 68322549 68322826 -213870838 - AluSc SINE Alu 0 309 36 242 231 60 94 chr1 68322923 68323040 -213870624 + L2 LINE L2 3192 3304 -9 460 299 152 15 chr1 68323274 68323478 -213870186 - MIR SINE MIR -30 232 1 2276 106 0 0 chr1 68324920 68325223 -213868441 - AluY SINE Alu -8 303 1 658 236 81 29 chr1 68325645 68325819 -213867845 + MIR SINE MIR 8 190 -72 470 296 115 41 chr1 68325863 68326082 -213867582 - L1MC4a LINE L1 -1983 5825 5624 914 57 8 0 chr1 68326082 68326206 -213867458 - L1PA13 LINE L1 -3 6160 6036 470 296 115 41 chr1 68326206 68326428 -213867236 - L1MC4a LINE L1 -2184 5624 5351 373 63 51 13 chr1 68326778 68326857 -213866807 + (TA)n Simple_repeat Simple_repeat 2 83 0 23 117 0 0 chr1 68327545 68327673 -213865991 + AT_rich Low_complexity Low_complexity 1 128 0 2141 122 3 22 chr1 68327907 68328218 -213865446 - AluSq SINE Alu -8 305 1 526 374 40 22 chr1 68328410 68328688 -213864976 - L2 LINE L2 0 3272 2990 185 343 10 61 chr1 68329033 68329132 -213864532 - MIR SINE MIR -166 96 3 474 303 10 14 chr1 68330277 68330485 -213863179 + L1ME LINE L1 5306 5512 -654 440 223 69 64 chr1 68330501 68330689 -213862975 + MER58C DNA MER1_type 22 210 -5 225 277 59 0 chr1 68330715 68330816 -213862848 + L1ME LINE L1 5531 5637 -533 1291 172 27 54 chr1 68330991 68331323 -213862341 - MER33 DNA MER1_type -1 323 1 1880 157 10 0 chr1 68331604 68331897 -213861767 + AluSx SINE Alu 3 298 -14 280 344 104 26 chr1 68333284 68333514 -213860150 - MIR SINE MIR -14 248 1 245 278 46 46 chr1 68333545 68333653 -213860011 - MIR SINE MIR -50 212 105 2499 151 16 11 chr1 68333691 68334128 -213859536 - L1PA16 LINE L1 0 6166 5728 2005 56 42 7 chr1 68334128 68334413 -213859251 + MLT2A1 LTR ERVL 1 295 -149 408 378 111 0 chr1 68334425 68334840 -213858824 + L2 LINE L2 2838 3298 -15 22 0 0 0 chr1 68334870 68334892 -213858772 + AT_rich Low_complexity Low_complexity 1 22 0 2343 178 14 16 chr1 68335422 68335848 -213857816 + MSTB LTR MaLR 2 426 0 8552 189 27 2 chr1 68335848 68337459 -213856205 + MSTB-int LTR MaLR 1 1651 0 2153 191 17 17 chr1 68337460 68337874 -213855790 + MSTB LTR MaLR 13 426 0 213 358 11 21 chr1 68339060 68339155 -213854509 + L2 LINE L2 2799 2892 -422 564 237 85 0 chr1 68340382 68340559 -213853105 + L1MC4 LINE L1 6459 6650 -1392 387 73 0 0 chr1 68341306 68341361 -213852303 + (ATG)n Simple_repeat Simple_repeat 2 56 0 573 326 73 21 chr1 68341362 68341595 -213852069 - MIR SINE MIR -10 252 8 312 337 51 40 chr1 68341618 68341763 -213851901 - MIR SINE MIR -63 145 4 1992 131 38 7 chr1 68342597 68342887 -213850777 + AluSx SINE Alu 1 299 -13 889 158 18 0 chr1 68342909 68343080 -213850584 - L1MA6 LINE L1 -3 6297 6124 8740 29 1 0 chr1 68343494 68345297 -213848367 - L1PA3 LINE L1 -3 6152 4349 * 17944 33 1 0 chr1 68345296 68347487 -213846177 + L1PA3 LINE L1 2182 4374 -1772 595 188 8 0 chr1 68347484 68347601 -213846063 - L1MA6 LINE L1 -167 6133 6016 * 2306 45 0 0 chr1 68347614 68347900 -213845764 + L1PA2 LINE L1 5870 6155 0 21 0 0 0 chr1 68347941 68347962 -213845702 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr1 68347981 68348008 -213845656 + (A)n Simple_repeat Simple_repeat 1 27 0 251 327 0 28 chr1 68348438 68348545 -213845119 + L2 LINE L2 3169 3272 -41 189 290 32 65 chr1 68348625 68348749 -213844915 + MIR SINE MIR 72 191 -71 233 161 0 89 chr1 68348863 68348919 -213844745 + L3 LINE CR1 1526 1576 -1 2597 143 34 5 chr1 68349153 68349567 -213844097 + MSTB LTR MaLR 1 426 0 227 158 0 0 chr1 68349630 68349668 -213843996 - MIR SINE MIR -106 156 119 1757 159 226 12 chr1 68349810 68350212 -213843452 - MLT1D LTR MaLR 0 505 18 403 308 43 8 chr1 68350583 68350700 -213842964 - MIR SINE MIR -122 140 20 230 325 36 0 chr1 68351562 68351645 -213842019 + L2 LINE L2 2938 3023 -249 192 219 42 94 chr1 68352293 68352389 -213841275 - L3 LINE CR1 -1038 539 449 384 336 4 20 chr1 68352476 68352648 -213841016 - MIR3 SINE MIR -53 155 15 1099 256 116 25 chr1 68352739 68353145 -213840519 - LTR16A1 LTR ERVL -7 450 8 329 254 158 30 chr1 68353665 68353830 -213839834 - MIR SINE MIR -3 259 74 475 317 154 30 chr1 68354021 68354606 -213839058 + L2 LINE L2 2661 3313 0 194 326 26 4 chr1 68354893 68355013 -213838651 + MIR SINE MIR 20 144 -64 193 299 142 67 chr1 68355289 68355423 -213838241 - MIR3 SINE MIR -15 193 50 272 310 31 63 chr1 68355539 68355589 -213838075 + MIR SINE MIR 37 87 -166 1624 178 106 3 chr1 68355589 68355920 -213837744 + MLT1A1 LTR MaLR 1 365 0 272 310 31 63 chr1 68355920 68356032 -213837632 + MIR SINE MIR 87 191 -62 816 222 6 6 chr1 68357226 68357388 -213836276 - MER20 DNA MER1_type -56 163 2 297 297 99 0 chr1 68357608 68357699 -213835965 + L2 LINE L2 3173 3272 0 438 238 43 113 chr1 68357773 68357958 -213835706 + MER91B DNA MER1_type 19 190 0 285 333 80 12 chr1 68359071 68359233 -213834431 - MIR3 SINE MIR 0 208 36 334 146 0 107 chr1 68359947 68360050 -213833614 + L1MA8 LINE L1 6200 6291 0 190 309 0 0 chr1 68360966 68361008 -213832656 - L2 LINE L2 -22 3291 3250 * 498 333 85 0 chr1 68360978 68361167 -213832497 - MIR SINE MIR -28 234 30 314 306 39 50 chr1 68361517 68361697 -213831967 + MIR SINE MIR 49 226 -36 * 858 270 34 0 chr1 68361666 68361899 -213831765 + MIR SINE MIR 21 261 -1 273 266 9 73 chr1 68362153 68362262 -213831402 + MIR SINE MIR 19 120 -88 451 347 20 15 chr1 68362328 68362533 -213831131 + MIR SINE MIR 38 241 -21 384 305 43 102 chr1 68362958 68363214 -213830450 + L2 LINE L2 3032 3272 0 313 319 57 0 chr1 68364008 68364149 -213829515 + L2 LINE L2 3165 3313 0 367 232 11 54 chr1 68364235 68364420 -213829244 + (TATAA)n Simple_repeat Simple_repeat 2 178 0 21 0 0 0 chr1 68364425 68364446 -213829218 + AT_rich Low_complexity Low_complexity 1 21 0 186 273 34 23 chr1 68364446 68364534 -213829130 + MIR SINE MIR 146 234 -28 763 284 85 34 chr1 68364768 68365156 -213828508 + MLT1I LTR MaLR 2 409 0 312 343 40 0 chr1 68366389 68366488 -213827176 + L2 LINE L2 3156 3258 -14 350 314 225 0 chr1 68366490 68366681 -213826983 + MIR SINE MIR 15 248 -14 223 269 0 0 chr1 68367313 68367365 -213826299 + A-rich Low_complexity Low_complexity 2 53 0 435 165 249 130 chr1 68368641 68368902 -213824762 - L1MB7 LINE L1 -10 6174 5883 316 274 89 22 chr1 68368956 68369091 -213824573 + MIR SINE MIR 113 256 -6 21 36 0 0 chr1 68369400 68369428 -213824236 + AT_rich Low_complexity Low_complexity 1 28 0 255 0 0 0 chr1 68369518 68369549 -213824115 - L1M LINE L1 -1019 5284 5254 2329 139 51 23 chr1 68369559 68369666 -213823998 + L1PB4 LINE L1 5707 5810 -346 2748 16 0 0 chr1 68369666 68369973 -213823691 - AluYa5 SINE Alu -4 307 1 2329 139 51 23 chr1 68369973 68370296 -213823368 + L1PB4 LINE L1 5810 6149 -7 1799 234 44 60 chr1 68370427 68370788 -213822876 - MER119 DNA MER1_type -1 582 232 501 138 0 12 chr1 68370788 68370868 -213822796 - L1MC1 LINE L1 -18 6315 6237 1799 234 44 60 chr1 68370868 68371091 -213822573 - MER119 DNA MER1_type -351 232 7 202 246 154 0 chr1 68371836 68371901 -213821763 - MIR SINE MIR 0 262 188 187 250 275 25 chr1 68372225 68372305 -213821359 + L2 LINE L2 3173 3272 0 1224 190 34 4 chr1 68373119 68373387 -213820277 - L1MA10 LINE L1 -7 6327 6052 260 368 59 43 chr1 68374109 68374413 -213819251 - LTR16C LTR ERVL -61 430 122 398 313 58 21 chr1 68374584 68374910 -213818754 + L1ME4a LINE L1 5614 5951 -170 366 307 73 68 chr1 68375460 68375652 -213818012 - MIR SINE MIR -59 203 11 37 62 0 0 chr1 68376092 68376157 -213817507 + AT_rich Low_complexity Low_complexity 1 65 0 321 335 158 25 chr1 68377370 68377528 -213816136 + MIR SINE MIR 12 190 -72 323 357 83 43 chr1 68379006 68379499 -213814165 + L2 LINE L2 2108 2620 -694 2109 121 3 7 chr1 68379502 68379809 -213813855 - AluSg SINE Alu -4 306 1 776 174 0 0 chr1 68379898 68380030 -213813634 + FLAM_C SINE Alu 12 143 0 29 0 0 0 chr1 68380038 68380067 -213813597 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr1 68380959 68380993 -213812671 + (CA)n Simple_repeat Simple_repeat 2 35 0 414 301 77 31 chr1 68381527 68381723 -213811941 - MIR SINE MIR -38 224 20 311 351 34 38 chr1 68381727 68381989 -213811675 - L2 LINE L2 -782 2532 2272 291 128 26 39 chr1 68382445 68382523 -213811141 + CT-rich Low_complexity Low_complexity 2 78 0 6971 146 27 8 chr1 68382808 68383325 -213810339 + Tigger3b DNA MER2_type 5 511 -2517 282 29 0 0 chr1 68383325 68383360 -213810304 + (TG)n Simple_repeat Simple_repeat 2 36 0 6971 146 27 8 chr1 68383360 68384045 -213809619 + Tigger3b DNA MER2_type 511 1230 -1 342 287 52 29 chr1 68384136 68384272 -213809392 - L2 LINE L2 -1 3312 3174 449 331 17 0 chr1 68384278 68384459 -213809205 - MER117 DNA MER1_type -6 191 8 219 258 48 16 chr1 68384650 68384712 -213808952 - L2 LINE L2 -2 3270 3207 * 282 339 22 45 chr1 68384709 68384881 -213808783 + MIR3 SINE MIR 36 205 -3 290 244 70 12 chr1 68385165 68385251 -213808413 - MLT1J2 LTR MaLR -121 329 239 288 342 34 7 chr1 68385306 68385455 -213808209 - MLT1J2 LTR MaLR -296 154 2 1728 185 108 49 chr1 68385663 68386134 -213807530 + MLT1D LTR MaLR 7 505 0 696 210 131 0 chr1 68386153 68386329 -213807335 - MIR SINE MIR 0 262 64 661 243 94 66 chr1 68386525 68386887 -213806777 + MLT1H LTR MaLR 97 468 -81 4017 224 31 18 chr1 68388807 68390019 -213803645 - L1MA9 LINE L1 -38 6274 5052 703 293 0 0 chr1 68390020 68390211 -213803453 - AluJb SINE Alu -1 311 121 457 225 42 8 chr1 68390211 68390331 -213803333 - L1M4 LINE L1 -1116 6051 5928 2134 198 8 13 chr1 68390331 68390726 -213802938 - L1M4 LINE L1 -6768 400 8 1156 247 38 46 chr1 68390757 68391150 -213802514 - MLT1B LTR MaLR 0 390 1 1788 149 59 3 chr1 68391152 68391440 -213802224 - AluSg SINE Alu -6 304 1 257 317 117 0 chr1 68391457 68391577 -213802087 - L2 LINE L2 -1 3271 3138 2248 111 0 0 chr1 68392193 68392491 -213801173 + AluSq SINE Alu 1 298 -15 266 320 21 10 chr1 68392600 68392697 -213800967 + L2 LINE L2 3173 3270 -2 211 371 57 24 chr1 68393477 68393601 -213800063 - L2 LINE L2 -2 3270 3143 1973 198 79 32 chr1 68393614 68394085 -213799579 + MLT1D LTR MaLR 13 505 0 1174 266 84 16 chr1 68394334 68394786 -213798878 - MER20B DNA MER1_type 0 783 301 379 284 101 27 chr1 68394955 68395103 -213798561 + MLT1L LTR MaLR 443 601 -14 4481 178 31 8 chr1 68395179 68396061 -213797603 + MER4D LTR ERV1 1 902 -1 1924 199 68 0 chr1 68396225 68396651 -213797013 - MLT1D LTR MaLR 0 505 51 615 302 91 43 chr1 68396794 68397273 -213796391 - MLT1K LTR MaLR 0 588 7 357 329 149 6 chr1 68397669 68397830 -213795834 + MIR SINE MIR 6 189 -73 2259 144 5 19 chr1 68397850 68398219 -213795445 - THE1B LTR MaLR 0 364 1 11532 99 14 1 chr1 68398219 68399779 -213793885 - THE1B-int LTR MaLR 0 1580 1 2268 136 11 19 chr1 68399779 68400146 -213793518 - THE1B LTR MaLR 0 364 1 236 308 39 13 chr1 68400194 68400272 -213793392 - MIR SINE MIR -87 121 42 271 354 88 25 chr1 68400316 68400556 -213793108 - MIR SINE MIR 0 262 8 375 306 32 34 chr1 68400807 68400956 -213792708 - MIR SINE MIR -78 130 9 1871 120 54 36 chr1 68401402 68401735 -213791929 + LTR8 LTR ERV1 2 340 -351 945 55 0 0 chr1 68401735 68401862 -213791802 - L1PA5 LINE L1 -3499 2647 2521 * 7384 51 1 19 chr1 68401859 68405442 -213788222 + L1PA5 LINE L1 2634 6153 -1 2231 78 37 118 chr1 68405442 68405716 -213787948 + LTR8 LTR ERV1 315 547 -144 2235 130 0 0 chr1 68405716 68406016 -213787648 + AluSx SINE Alu 2 301 -11 2231 78 37 118 chr1 68406016 68406149 -213787515 + LTR8 LTR ERV1 547 689 -2 717 269 6 6 chr1 68406328 68406503 -213787161 + MER45A DNA AcHobo 4 178 0 337 357 94 28 chr1 68406670 68406925 -213786739 - L2 LINE L2 -441 2873 2602 459 344 62 5 chr1 68408036 68408231 -213785433 - MIR SINE MIR -44 218 13 406 240 85 9 chr1 68408720 68408896 -213784768 + MLT1J1 LTR MaLR 111 272 -178 186 43 0 0 chr1 68408896 68408919 -213784745 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 406 240 85 9 chr1 68408919 68409021 -213784643 + MLT1J1 LTR MaLR 272 449 -1 430 254 16 57 chr1 68409022 68409144 -213784520 - MIR SINE MIR -145 117 1 294 282 106 71 chr1 68409546 68409716 -213783948 - MIR SINE MIR -37 225 50 276 53 0 0 chr1 68409719 68409757 -213783907 + (TG)n Simple_repeat Simple_repeat 2 39 0 2332 285 80 42 chr1 68410118 68412761 -213780903 + L1ME2 LINE L1 1622 4438 -1777 1112 272 44 37 chr1 68412804 68413263 -213780401 + L1ME2 LINE L1 5763 6224 -9 249 311 0 22 chr1 68413264 68413354 -213780310 + GA-rich Low_complexity Low_complexity 3 90 0 210 300 64 45 chr1 68414183 68414293 -213779371 - MIR SINE MIR -61 201 90 295 293 0 0 chr1 68414374 68414449 -213779215 + L2 LINE L2 3234 3308 -5 1887 209 12 19 chr1 68415558 68415984 -213777680 + L1MC1 LINE L1 5911 6333 0 188 385 15 0 chr1 68416574 68416639 -213777025 + L2 LINE L2 3233 3298 -15 1039 213 0 0 chr1 68416682 68416870 -213776794 + MER5A DNA MER1_type 1 188 -1 729 319 19 27 chr1 68417346 68417609 -213776055 - MIR SINE MIR 0 262 2 273 242 114 76 chr1 68418151 68418283 -213775381 - MIR SINE MIR -21 241 105 342 365 22 7 chr1 68418566 68418703 -213774961 - MIR3 SINE MIR -47 161 23 6566 173 22 189 chr1 68418960 68421124 -213772540 + L1M2 LINE L1 1 1647 -5202 2153 137 0 3 chr1 68421124 68421431 -213772233 + AluSx SINE Alu 1 306 -6 6566 173 22 189 chr1 68421431 68421903 -213771761 + L1M2 LINE L1 1647 2196 -4653 14014 173 76 10 chr1 68521905 68525393 -213668271 - L1 LINE L1 -839 6726 2981 2788 23 0 3 chr1 68525393 68525703 -213667961 - AluYa5 SINE Alu -2 309 1 14014 173 76 10 chr1 68525703 68525856 -213667808 - L1 LINE L1 -4584 2981 2840 3915 193 32 46 chr1 68525853 68526725 -213666939 - L1 LINE L1 -6656 909 49 * 2260 104 0 0 chr1 68526725 68527047 -213666617 - AluY SINE Alu 0 311 1 3915 193 32 46 chr1 68527047 68527081 -213666583 - L1 LINE L1 -7516 49 16 2477 128 31 0 chr1 68528368 68528721 -213664943 - THE1B LTR MaLR 0 364 1 245 250 17 17 chr1 68529296 68529356 -213664308 + Charlie4 DNA MER1_type 1898 1957 -4 272 375 104 24 chr1 68530378 68530706 -213662958 - L2 LINE L2 -80 3192 2839 264 286 143 9 chr1 68530823 68530928 -213662736 + LTR33A LTR ERVL 56 174 -349 277 371 76 0 chr1 68531915 68532047 -213661617 - LTR33 LTR ERVL -377 144 3 4681 140 43 4 chr1 68532269 68533042 -213660622 - L1PA16 LINE L1 -9 6157 5355 4083 189 52 48 chr1 68533044 68533924 -213659740 + L1 LINE L1 4306 5193 -953 2263 118 0 0 chr1 68533924 68534228 -213659436 + AluSg SINE Alu 3 306 -4 4083 189 52 48 chr1 68534228 68534397 -213659267 + L1 LINE L1 5193 5360 -786 3495 194 102 15 chr1 68534397 68535518 -213658146 - L1MB3 LINE L1 -53 6018 4807 1929 222 141 30 chr1 68535525 68536299 -213657365 - L1MB3 LINE L1 -3329 2705 1736 1598 198 7 10 chr1 68536299 68536597 -213657067 - AluJo SINE Alu -15 297 1 1929 222 141 30 chr1 68536597 68537047 -213656617 - L1MB3 LINE L1 -4298 1736 1337 1058 241 72 49 chr1 68537049 68537690 -213655974 - L1MB3 LINE L1 -4653 1302 197 257 276 103 70 chr1 68538109 68538265 -213655399 - L1MB3 LINE L1 -5793 162 2 7036 141 58 54 chr1 68538347 68539620 -213654044 - MER52C LTR ERV1 0 1278 1 2505 48 0 3 chr1 68540652 68540947 -213652717 + AluY SINE Alu 17 310 -1 1752 150 45 3 chr1 68541312 68541332 -213652332 - AluSg SINE Alu -12 298 280 300 27 0 0 chr1 68541332 68541369 -213652295 + (TG)n Simple_repeat Simple_repeat 2 38 0 1752 150 45 3 chr1 68541369 68541634 -213652030 - AluSg SINE Alu -30 280 1 571 247 65 12 chr1 68541656 68541826 -213651838 - MIR SINE MIR -67 195 17 1328 233 67 23 chr1 68541905 68542249 -213651415 + MLT2B1 LTR ERVL 162 520 0 7988 201 46 13 chr1 68542251 68544369 -213649295 + ERVL LTR ERVL 3 2244 -3520 5158 124 32 38 chr1 68544369 68545154 -213648510 + LTR17 LTR ERV1 1 780 0 4731 96 29 26 chr1 68545154 68545842 -213647822 + HERV17 LTR ERV1 2 691 -7935 9472 75 11 6 chr1 68546148 68547379 -213646285 + HERV17 LTR ERV1 779 2016 -6610 * 14803 49 5 0 chr1 68547362 68549107 -213644557 + HERV17 LTR ERV1 2430 4182 -4444 2327 77 0 0 chr1 68549100 68549387 -213644277 + HERV17 LTR ERV1 8335 8621 -5 * 5434 115 31 11 chr1 68549391 68550154 -213643510 + LTR17 LTR ERV1 1 779 -1 12208 174 62 7 chr1 68550154 68552360 -213641304 + ERVL LTR ERVL 2241 4570 -1194 1149 271 51 32 chr1 68552546 68552981 -213640683 + LTR33 LTR ERVL 24 466 -55 252 320 108 63 chr1 68553105 68553421 -213640243 + L2 LINE L2 2597 2926 -388 571 272 57 13 chr1 68553481 68553639 -213640025 - MIR SINE MIR -67 195 31 231 293 53 105 chr1 68553659 68553792 -213639872 + L2 LINE L2 2983 3108 -164 327 294 101 0 chr1 68554060 68554169 -213639495 - L2 LINE L2 -4 3309 3190 220 214 0 0 chr1 68554699 68554741 -213638923 - MIR SINE MIR -62 146 105 5919 105 55 2 chr1 68554741 68555644 -213638020 - L1P LINE L1 -2805 3341 2391 241 223 0 22 chr1 68555654 68555711 -213637953 - MIR SINE MIR -138 70 16 1018 234 0 0 chr1 68555715 68555920 -213637744 + MER3 DNA MER1_type 1 205 -4 197 331 102 32 chr1 68556014 68556171 -213637493 - L2 LINE L2 -3 3269 3102 188 338 56 28 chr1 68556374 68556516 -213637148 - MIR SINE MIR -57 205 60 456 283 25 0 chr1 68557209 68557329 -213636335 - MIR3 SINE MIR -14 194 72 2598 53 0 0 chr1 68557347 68557649 -213636015 + AluY SINE Alu 1 302 -9 320 288 48 0 chr1 68558040 68558165 -213635499 - MIR SINE MIR -56 206 76 247 264 209 31 chr1 68558168 68558297 -213635367 - L2 LINE L2 0 3313 3162 753 238 40 60 chr1 68558445 68558693 -213634971 - MIR SINE MIR -1 261 19 1161 241 195 38 chr1 68559445 68559964 -213633700 - MLT1G1 LTR MaLR -17 573 1 628 287 116 10 chr1 68560116 68560409 -213633255 - LTR16A LTR ERVL -2 448 125 189 333 111 8 chr1 68561181 68561298 -213632366 + MIR SINE MIR 103 231 -31 467 244 135 13 chr1 68561448 68561608 -213632056 + MIR SINE MIR 53 230 -32 215 312 108 0 chr1 68562376 68562469 -213631195 - MIR SINE MIR -56 152 50 195 139 0 0 chr1 68563268 68563304 -213630360 + (A)n Simple_repeat Simple_repeat 1 36 0 224 316 79 0 chr1 68564174 68564250 -213629414 + MIR SINE MIR 48 129 -79 22 0 0 0 chr1 68564305 68564327 -213629337 + AT_rich Low_complexity Low_complexity 1 22 0 314 240 77 97 chr1 68564339 68564535 -213629129 + L2 LINE L2 3025 3216 -97 369 357 32 13 chr1 68565692 68565849 -213627815 + MIR SINE MIR 26 185 -77 382 222 26 60 chr1 68566348 68566465 -213627199 - MIR3 SINE MIR -9 199 87 343 321 18 24 chr1 68566984 68567149 -213626515 + L2 LINE L2 3125 3288 -25 229 257 40 14 chr1 68567149 68567223 -213626441 + GA-rich Low_complexity Low_complexity 1 76 0 360 313 15 8 chr1 68569217 68569351 -213624313 + CT-rich Low_complexity Low_complexity 5 139 0 206 266 47 16 chr1 68569633 68569697 -213623967 + MIR SINE MIR 62 127 -135 1372 289 26 8 chr1 68569921 68570312 -213623352 - LTR16A LTR ERVL -10 440 43 28 86 0 0 chr1 68570374 68570444 -213623220 + AT_rich Low_complexity Low_complexity 1 70 0 403 314 93 15 chr1 68571081 68571285 -213622379 + MIR SINE MIR 23 242 -20 257 357 24 0 chr1 68571366 68571450 -213622214 + L2 LINE L2 3146 3231 -41 33 25 0 0 chr1 68571455 68571495 -213622169 + AT_rich Low_complexity Low_complexity 1 40 0 437 299 167 60 chr1 68572190 68572508 -213621156 - L2 LINE L2 -12 3260 2909 1028 185 0 0 chr1 68572901 68573074 -213620590 + MLT2C2 LTR ERVL 238 410 -54 256 289 0 31 chr1 68573083 68573180 -213620484 - L1MC4 LINE L1 -1334 6708 6615 291 112 0 8 chr1 68573180 68573231 -213620433 + MLT2C2 LTR ERVL 417 456 -8 336 268 84 21 chr1 68573275 68573417 -213620247 + MIR SINE MIR 102 252 -10 184 284 80 34 chr1 68574067 68574155 -213619509 - MIR SINE MIR -139 123 32 322 256 161 18 chr1 68574196 68574364 -213619300 + MER117 DNA MER1_type 5 196 -1 1211 206 5 5 chr1 68574395 68574614 -213619050 + MER58A DNA MER1_type 1 219 -5 220 246 0 46 chr1 68574682 68574747 -213618917 - L2 LINE L2 0 3313 3252 195 129 0 0 chr1 68574754 68574785 -213618879 + (CA)n Simple_repeat Simple_repeat 2 32 0 491 328 17 11 chr1 68575372 68575549 -213618115 + MER5B DNA MER1_type 1 178 0 393 259 96 30 chr1 68575798 68575964 -213617700 + MIR SINE MIR 11 187 -75 1939 120 132 37 chr1 68576219 68576652 -213617012 + ERVL-B1 LTR ERVL 5284 5757 -7 2156 211 106 6 chr1 68576652 68577125 -213616539 + MLT2B1 LTR ERVL 1 520 0 900 209 76 14 chr1 68577249 68577459 -213616205 + MLT2B1 LTR ERVL 1 223 -297 266 125 21 0 chr1 68577459 68577507 -213616157 + (TG)n Simple_repeat Simple_repeat 1 49 0 308 274 0 0 chr1 68577507 68577580 -213616084 - L1MC4 LINE L1 -1340 6702 6630 1086 116 211 0 chr1 68577621 68577811 -213615853 + MER30 DNA MER1_type 1 230 0 248 282 14 14 chr1 68579701 68579772 -213613892 - MLT1L LTR MaLR -544 71 1 345 295 74 16 chr1 68580211 68580333 -213613331 + L2 LINE L2 3177 3305 -8 180 323 32 16 chr1 68581675 68581737 -213611927 + MIR SINE MIR 30 92 -116 1126 198 57 28 chr1 68581765 68582013 -213611651 - MLT1A2 LTR MaLR 0 374 120 996 269 18 7 chr1 68582137 68582419 -213611245 - L1M4 LINE L1 -1905 4241 3957 1966 169 83 16 chr1 68584112 68584545 -213609119 - MER101 LTR ERV1 -2 472 11 1880 196 150 0 chr1 68584740 68585281 -213608383 - MER114 LTR ERV -6 642 21 1795 201 22 30 chr1 68586968 68587336 -213606328 - MLT1A1 LTR MaLR 0 365 1 248 333 0 14 chr1 68587742 68587814 -213605850 - L2 LINE L2 -993 2321 2251 253 250 15 15 chr1 68588566 68588634 -213605030 - MLT1K LTR MaLR 0 588 521 589 311 14 24 chr1 68589126 68589335 -213604329 - MLT1I LTR MaLR -109 300 94 1038 227 43 56 chr1 68589876 68590263 -213603401 + MLT2B1 LTR ERVL 1 480 -40 255 150 0 50 chr1 68590308 68590368 -213603296 + MLT2B1 LTR ERVL 464 520 0 16912 84 9 5 chr1 68590493 68593511 -213600153 - L1PA7 LINE L1 -1 6153 3134 12903 138 16 113 chr1 68593511 68596451 -213597213 - L1PA7 LINE L1 -3479 2667 12 1640 273 95 49 chr1 68596480 68598006 -213595658 - L1ME LINE L1 -3933 2892 1144 229 234 0 16 chr1 68598544 68598608 -213595056 - L1ME LINE L1 -5933 701 639 22 0 0 0 chr1 68598881 68598903 -213594761 + AT_rich Low_complexity Low_complexity 1 22 0 11157 152 57 22 chr1 68599548 68601876 -213591788 + L1M4c LINE L1 21 2430 -3954 460 336 28 83 chr1 68601907 68602267 -213591397 + L1MEd LINE L1 500 839 -5280 377 289 65 90 chr1 68602367 68602496 -213591168 + MLT1I LTR MaLR 63 194 -215 1737 173 49 35 chr1 68602496 68602865 -213590799 - MLT1A2 LTR MaLR 0 374 1 377 289 65 90 chr1 68602865 68603091 -213590573 + MLT1I LTR MaLR 194 409 0 530 292 129 74 chr1 68603219 68603603 -213590061 + L1M4 LINE L1 4117 4479 -1667 1794 141 0 47 chr1 68603603 68603923 -213589741 + AluSx SINE Alu 1 306 0 530 292 129 74 chr1 68603923 68604553 -213589111 + L1M4 LINE L1 4479 5206 -940 195 262 24 0 chr1 68604969 68605011 -213588653 + L2 LINE L2 3261 3303 -10 2300 121 0 0 chr1 68607248 68607555 -213586109 + AluSq SINE Alu 1 307 -6 894 217 30 0 chr1 68607565 68607731 -213585933 + FAM SINE Alu 1 171 -4 1149 219 108 31 chr1 68608446 68608771 -213584893 - MLT1F1 LTR MaLR -1 566 217 860 106 10 3 chr1 68609200 68609330 -213584334 - MLT2A1 LTR ERVL -40 475 280 727 51 0 0 chr1 68609328 68609426 -213584238 - MLT2A1 LTR ERVL -346 98 1 * 336 250 68 34 chr1 68609426 68609543 -213584121 - LTR33 LTR ERVL -118 403 281 520 168 15 0 chr1 68609641 68609844 -213583820 + (TA)n Simple_repeat Simple_repeat 1 206 0 4828 74 6 6 chr1 68609844 68610503 -213583161 + HERVL LTR ERVL 643 1301 -4353 30087 73 14 17 chr1 68610942 68615139 -213578525 + HERVL LTR ERVL 1312 5495 -159 180 111 0 0 chr1 68615546 68615573 -213578091 + (TA)n Simple_repeat Simple_repeat 2 28 0 307 400 23 11 chr1 68615587 68615762 -213577902 - L1ME LINE L1 -461 5660 5484 685 217 75 0 chr1 68616349 68616510 -213577154 - L1PA16 LINE L1 -24 6142 5970 6437 82 11 4 chr1 68616866 68618096 -213575568 - L1PA10 LINE L1 -5 6163 4927 996 315 134 11 chr1 68618096 68618765 -213574899 + L2 LINE L2 1644 2395 -919 259 292 77 49 chr1 68619371 68619569 -213574095 - MIR SINE MIR -41 221 19 297 44 22 0 chr1 68619720 68619765 -213573899 + MADE1 DNA Mariner 35 80 0 312 308 8 51 chr1 68620115 68620232 -213573432 + L2 LINE L2 3139 3250 -22 284 255 46 59 chr1 68620372 68620525 -213573139 + MIR SINE MIR 79 229 -33 221 56 0 28 chr1 68620559 68620595 -213573069 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3115 41 0 3 chr1 68620595 68620986 -213572678 - L1PA3 LINE L1 -24 6131 5742 318 169 0 4 chr1 68620986 68621049 -213572615 - Alu SINE Alu -253 48 1 344 343 56 0 chr1 68621563 68621671 -213571993 - MER81 DNA DNA 0 114 1 1060 249 64 34 chr1 68621702 68622028 -213571636 + LTR16C LTR ERVL 148 483 -8 1202 182 32 122 chr1 68622350 68622751 -213570913 - MLT1A1 LTR MaLR 0 365 1 6988 226 45 33 chr1 68622751 68624464 -213569200 - MLT1A1-int LTR MaLR 0 1735 2 604 197 15 7 chr1 68624465 68624602 -213569062 - MLT1A1 LTR MaLR 0 365 228 210 388 12 12 chr1 68624718 68624803 -213568861 - MIR SINE MIR -87 121 37 188 341 11 23 chr1 68625168 68625256 -213568408 + MIR3 SINE MIR 99 185 -23 357 328 95 22 chr1 68626027 68626169 -213567495 + MIR SINE MIR 14 144 -118 2077 138 0 0 chr1 68626169 68626460 -213567204 - AluSc SINE Alu -18 291 1 357 328 95 22 chr1 68626460 68626504 -213567160 + MIR SINE MIR 144 183 -79 945 180 115 25 chr1 68626504 68626704 -213566960 - MER20 DNA MER1_type -1 218 1 1852 155 3 10 chr1 68626712 68627002 -213566662 + AluSx SINE Alu 6 293 -19 357 328 95 22 chr1 68627002 68627037 -213566627 + MIR SINE MIR 189 262 0 412 350 61 11 chr1 68627759 68627939 -213565725 - MIR SINE MIR -54 208 20 282 331 52 81 chr1 68628143 68628512 -213565152 - L2 LINE L2 -43 3229 2872 233 258 124 0 chr1 68629063 68629160 -213564504 + L2 LINE L2 2942 3050 -222 1612 189 17 3 chr1 68629479 68629781 -213563883 + ERVL LTR ERVL 3353 3658 -2106 193 298 70 35 chr1 68629781 68629895 -213563769 + L2 LINE L2 2591 2708 -606 364 278 31 34 chr1 68630578 68630775 -213562889 - MIR SINE MIR -9 253 3 245 303 0 0 chr1 68630788 68630873 -213562791 + (TAG)n Simple_repeat Simple_repeat 1 85 0 325 321 23 38 chr1 68631958 68632089 -213561575 - MIR SINE MIR -116 146 18 209 351 13 0 chr1 68632824 68632901 -213560763 - L2 LINE L2 -300 2972 2895 213 288 311 0 chr1 68633141 68633273 -213560391 - MIR3 SINE MIR -8 200 28 1308 94 0 0 chr1 68634019 68634200 -213559464 - MLT2A1 LTR ERVL -45 399 219 1223 78 45 0 chr1 68634197 68634376 -213559288 - MLT2A2 LTR ERVL -266 187 1 * 336 250 68 34 chr1 68634376 68634493 -213559171 - LTR33 LTR ERVL -118 403 281 534 316 67 44 chr1 68635229 68635618 -213558046 - LTR33A LTR ERVL -125 398 1 1227 272 53 46 chr1 68635675 68636166 -213557498 + L2 LINE L2 1863 2360 -954 2402 97 3 0 chr1 68636166 68636477 -213557187 + AluSx SINE Alu 1 312 0 1227 272 53 46 chr1 68636477 68636511 -213557153 + L2 LINE L2 2360 2392 -922 299 306 107 0 chr1 68636615 68636736 -213556928 - L2 LINE L2 -5 3267 3134 320 263 53 21 chr1 68637032 68637127 -213556537 + MIR SINE MIR 105 202 -60 220 309 40 48 chr1 68637202 68637328 -213556336 - MIR3 SINE MIR -45 163 39 217 328 70 48 chr1 68637542 68637728 -213555936 - L3 LINE CR1 -191 1386 1197 * 289 346 108 34 chr1 68637718 68638105 -213555559 + L2 LINE L2 2424 2839 -475 215 347 21 0 chr1 68638284 68638379 -213555285 - L2 LINE L2 -848 2466 2370 204 277 36 12 chr1 68638473 68638556 -213555108 - L3 LINE CR1 -562 1015 931 243 62 101 0 chr1 68638986 68639031 -213554633 + MLT2A2 LTR ERVL 396 453 0 390 296 72 0 chr1 68639682 68639834 -213553830 + MER103 DNA DNA 3 165 -1 2435 98 24 27 chr1 68639890 68640266 -213553398 - THE1C LTR MaLR 0 375 1 464 273 187 2 chr1 68640405 68640624 -213553040 + MIR SINE MIR 3 251 -11 338 309 48 29 chr1 68642478 68642688 -213550976 + L2 LINE L2 2762 2975 -339 383 288 109 22 chr1 68643109 68643293 -213550371 - L3 LINE CR1 -165 1412 1213 258 317 56 21 chr1 68643356 68643498 -213550166 + MIR SINE MIR 86 232 -30 181 330 125 70 chr1 68643624 68643824 -213549840 - L2 LINE L2 -34 3238 3028 474 239 16 66 chr1 68644278 68644521 -213549143 + L1ME LINE L1 4096 4326 -1820 25 31 0 0 chr1 68644521 68644553 -213549111 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr1 68644587 68644615 -213549049 + AT_rich Low_complexity Low_complexity 1 28 0 2335 280 6 33 chr1 68644615 68645136 -213548528 - MER7C DNA MER2_type -94 508 2 556 192 58 13 chr1 68645143 68645299 -213548365 + L1ME LINE L1 4456 4618 -1528 532 324 77 9 chr1 68645310 68645684 -213547980 - LTR16A1 LTR ERVL -6 451 72 805 280 81 42 chr1 68645780 68646062 -213547602 + L1ME LINE L1 4624 4894 -1276 6865 59 7 7 chr1 68646062 68647148 -213546516 + L1PA6 LINE L1 5066 6151 -3 805 280 81 42 chr1 68647148 68647847 -213545817 + L1ME LINE L1 4894 5649 -521 * 1016 138 6 6 chr1 68647846 68648020 -213545644 + L1PA15-16 LINE L1 2503 2676 -4173 2318 80 3 0 chr1 68848036 68848323 -213345341 - AluSp SINE Alu -24 289 2 325 255 75 62 chr1 68848816 68848977 -213344687 + L1ME LINE L1 5677 5839 -282 2286 229 119 21 chr1 68849228 68849985 -213343679 + L1ME3A LINE L1 5306 6136 -34 3650 78 21 21 chr1 68850040 68850551 -213343113 - MER9 LTR ERVK 0 511 1 908 87 0 0 chr1 68850718 68850833 -213342831 + AluSp SINE Alu 1 115 -198 402 342 32 80 chr1 68850971 68850995 -213342669 - L2 LINE L2 -73 3199 3175 2454 76 0 0 chr1 68850995 68851297 -213342367 + AluY SINE Alu 1 302 -9 402 342 32 80 chr1 68851297 68851646 -213342018 - L2 LINE L2 -97 3175 2844 1449 108 44 8 chr1 68851727 68851976 -213341688 - L1MB3 LINE L1 -3 6180 5923 1953 204 87 13 chr1 68853119 68853589 -213340075 + MLT1D LTR MaLR 1 505 0 2355 83 58 19 chr1 68853592 68853953 -213339711 + THE1C LTR MaLR 1 375 0 285 303 126 76 chr1 68854807 68855084 -213338580 + L2 LINE L2 2982 3272 0 195 303 219 17 chr1 68855160 68855398 -213338266 - L2 LINE L2 -12 3301 3016 2399 97 7 0 chr1 68855497 68855835 -213337829 + AluSx SINE Alu 1 340 0 642 301 104 14 chr1 68855863 68856208 -213337456 - L2 LINE L2 -1242 2072 1697 237 83 0 0 chr1 68856378 68856414 -213337250 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 514 260 105 20 chr1 68856682 68856879 -213336785 + MIR SINE MIR 34 245 -17 2353 54 0 63 chr1 68857068 68857399 -213336265 - AluY SINE Alu -1 310 1 252 190 121 0 chr1 68858713 68858771 -213334893 - MLT1E2 LTR MaLR -142 484 420 1803 153 116 5 chr1 68858771 68859151 -213334513 + MER95 LTR ERV 1 422 -9 371 185 0 0 chr1 68859155 68859220 -213334444 - MLT1E2 LTR MaLR -205 421 357 270 259 0 0 chr1 68859249 68859307 -213334357 - MLT1E1 LTR MaLR -520 134 77 2127 134 7 0 chr1 68859594 68859899 -213333765 - AluSx SINE Alu -5 307 1 315 286 83 15 chr1 68860696 68860829 -213332835 - MIR SINE MIR -101 161 20 330 270 72 0 chr1 68861174 68861285 -213332379 + MIR SINE MIR 74 192 -70 182 233 47 0 chr1 68861426 68861469 -213332195 + L2 LINE L2 3253 3297 -16 209 322 67 11 chr1 68861762 68861852 -213331812 - MIR SINE MIR -89 173 79 213 205 169 0 chr1 68861893 68861976 -213331688 + MIR SINE MIR 154 250 -12 349 221 0 32 chr1 68862103 68862198 -213331466 - MLT1H LTR MaLR 0 549 458 283 222 16 0 chr1 68862245 68862308 -213331356 + MLT1E LTR MaLR 9 72 -521 1495 138 17 0 chr1 68862315 68862547 -213331117 - MER46A DNA MER2_type 0 236 1 485 161 11 0 chr1 68862547 68862640 -213331024 - MLT1E3 LTR MaLR -5 619 526 1531 193 52 7 chr1 68862795 68863064 -213330600 - AluJo SINE Alu -29 283 3 274 143 32 0 chr1 68863068 68863131 -213330533 + T-rich Low_complexity Low_complexity 1 65 0 216 159 14 43 chr1 68863124 68863193 -213330471 + C-rich Low_complexity Low_complexity 4 70 0 * 865 142 33 87 chr1 68863193 68863376 -213330288 - AluSg/x SINE Alu -10 302 130 1678 131 13 29 chr1 68863376 68863653 -213330011 - L1PB4 LINE L1 -261 5895 5622 2327 127 0 0 chr1 68863653 68863960 -213329704 - AluSg SINE Alu -2 308 2 1678 131 13 29 chr1 68863960 68863996 -213329668 - L1PB4 LINE L1 -534 5622 5587 1513 262 86 30 chr1 68863999 68864529 -213329135 + L1ME2 LINE L1 4617 5199 -947 2309 114 0 0 chr1 68864529 68864837 -213328827 - AluSc SINE Alu -1 308 1 1513 262 86 30 chr1 68864837 68865028 -213328636 + L1ME2 LINE L1 5199 5378 -768 1672 219 61 52 chr1 68865039 68865614 -213328050 + L1ME2 LINE L1 5575 6154 -10 1755 205 123 33 chr1 68865624 68866310 -213327354 + L1MC4 LINE L1 6360 7152 -736 931 198 55 36 chr1 68866343 68866596 -213327068 + L1MC4 LINE L1 7329 7586 -456 225 300 25 50 chr1 68866657 68866777 -213326887 - MIR SINE MIR -46 216 100 4755 126 26 32 chr1 68867532 68868402 -213325262 - L1MB3 LINE L1 -1 6182 5318 2062 125 20 3 chr1 68869287 68869590 -213324074 - AluSq SINE Alu -3 310 3 24 0 0 0 chr1 68869667 68869691 -213323973 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 68871047 68871084 -213322580 + AT_rich Low_complexity Low_complexity 1 37 0 2119 103 11 49 chr1 68872926 68873160 -213320504 + THE1A LTR MaLR 1 217 -138 25262 30 8 1 chr1 68873160 68876988 -213316676 + L1PA4 LINE L1 2322 6155 0 2119 103 11 49 chr1 68876988 68877122 -213316542 + THE1A LTR MaLR 217 355 0 1777 156 27 24 chr1 68877628 68877923 -213315741 - AluJb SINE Alu -15 297 2 992 173 58 5 chr1 68877968 68878176 -213315488 - L1MB7 LINE L1 -114 6070 5852 * 8031 219 40 50 chr1 68878172 68879107 -213314557 - L1MB3 LINE L1 -1002 5144 4201 2249 104 0 0 chr1 68879107 68879405 -213314259 - AluSx SINE Alu -10 302 5 8031 219 40 50 chr1 68879405 68880054 -213313610 - L1MB3 LINE L1 -1945 4201 3547 2191 75 44 7 chr1 68880054 68880347 -213313317 + AluSp SINE Alu 1 304 -9 8031 219 40 50 chr1 68880347 68881507 -213312157 - L1MB3 LINE L1 -2599 3547 2426 990 202 0 6 chr1 68882177 68882350 -213311314 - FRAM SINE Alu -6 170 1 1997 86 7 11 chr1 68882938 68883207 -213310457 + AluSx SINE Alu 28 295 -17 1895 81 104 0 chr1 68883840 68884099 -213309565 + AluSp SINE Alu 5 290 -23 218 288 85 0 chr1 68884163 68884222 -213309442 + L2 LINE L2 3239 3302 -11 2346 113 0 0 chr1 68884360 68884670 -213308994 + AluSg SINE Alu 1 310 0 2317 86 0 0 chr1 68884866 68885156 -213308508 + AluSg SINE Alu 1 290 -20 2193 122 3 3 chr1 68885307 68885619 -213308045 + AluSx SINE Alu 1 312 0 4604 171 29 24 chr1 68886157 68887643 -213306021 + L1MB3 LINE L1 4675 6173 -10 2250 98 10 0 chr1 68887714 68888010 -213305654 + AluSq SINE Alu 1 299 -14 364 285 126 20 chr1 68888010 68888256 -213305408 - L1MB7 LINE L1 -325 5796 5525 376 271 79 59 chr1 68888390 68888593 -213305071 - L1MB7 LINE L1 -2347 5461 5255 205 225 12 62 chr1 68888621 68888701 -213304963 + T-rich Low_complexity Low_complexity 3 78 0 195 395 46 28 chr1 68888966 68889075 -213304589 - MIR SINE MIR -64 144 34 2443 72 0 3 chr1 68889189 68889495 -213304169 - AluSx SINE Alu -7 305 1 26 0 0 0 chr1 68889803 68889829 -213303835 + AT_rich Low_complexity Low_complexity 1 26 0 307 289 81 64 chr1 68889858 68890031 -213303633 - MIR3 SINE MIR -6 202 27 2249 95 7 3 chr1 68890825 68891130 -213302534 + AluSg SINE Alu 1 306 -4 346 140 53 0 chr1 68892805 68892862 -213300802 + U7 snRNA snRNA 1 60 -3 2018 133 6 19 chr1 68892895 68893211 -213300453 + AluSx SINE Alu 1 312 0 236 361 152 6 chr1 68893612 68893770 -213299894 + L2 LINE L2 2574 2754 -560 543 292 68 41 chr1 68893855 68894074 -213299590 - MIR SINE MIR -26 236 12 358 150 67 0 chr1 68894081 68894141 -213299523 + L2 LINE L2 3250 3313 0 226 270 0 32 chr1 68894244 68894307 -213299357 + L2 LINE L2 3212 3272 0 27 49 0 0 chr1 68894454 68894495 -213299169 + AT_rich Low_complexity Low_complexity 1 41 0 421 158 167 61 chr1 68896649 68896763 -213296901 + L1MA9 LINE L1 6187 6312 0 2704 123 19 61 chr1 68898191 68898712 -213294952 + L1MA6 LINE L1 5801 6299 -1 1760 92 0 40 chr1 68899537 68899788 -213293876 + AluSx SINE Alu 6 246 -66 6850 205 48 76 chr1 68899953 68900634 -213293030 + L1MD2 LINE L1 3012 3710 -2649 14216 118 66 62 chr1 68900634 68900986 -213292678 - Tigger2 DNA MER2_type 0 2718 2369 1954 147 14 0 chr1 68900986 68901279 -213292385 - AluJo SINE Alu -15 297 1 14216 118 66 62 chr1 68901279 68902648 -213291016 - Tigger2 DNA MER2_type -349 2369 982 2115 108 10 10 chr1 68902648 68902943 -213290721 + AluSx SINE Alu 1 295 -17 14216 118 66 62 chr1 68902943 68903929 -213289735 - Tigger2 DNA MER2_type -1736 982 1 6850 205 48 76 chr1 68903929 68904147 -213289517 + L1MD2 LINE L1 3710 3932 -2427 515 197 188 0 chr1 68904147 68904264 -213289400 - FLAM_A SINE Alu -3 139 1 6850 205 48 76 chr1 68904264 68906449 -213287215 + L1MD2 LINE L1 3932 6132 -227 372 358 22 8 chr1 68906663 68906797 -213286867 + L2 LINE L2 3127 3262 -10 2444 54 7 0 chr1 68906811 68907106 -213286558 + AluY SINE Alu 1 297 -14 351 373 22 8 chr1 68907135 68907269 -213286395 + L2 LINE L2 3127 3262 -10 30 27 0 0 chr1 68907573 68907610 -213286054 + AT_rich Low_complexity Low_complexity 1 37 0 343 157 82 127 chr1 68908142 68908276 -213285388 + Tigger8 DNA MER2_type 388 515 -151 1970 114 32 0 chr1 68908404 68908685 -213284979 - AluSg SINE Alu -20 290 1 2150 77 0 51 chr1 68908702 68909013 -213284651 - AluSx SINE Alu -15 297 3 2142 117 10 0 chr1 68909045 68909354 -213284310 - AluSq SINE Alu -1 312 1 1568 186 10 14 chr1 68909666 68909957 -213283707 + AluJo SINE Alu 1 290 -22 22 56 0 0 chr1 68910516 68910552 -213283112 + AT_rich Low_complexity Low_complexity 1 36 0 1990 146 2 4 chr1 68910653 68910978 -213282686 + HERVH LTR ERV1 3993 5522 -3104 * 4713 120 7 4 chr1 68910976 68911854 -213281810 + HERVH LTR ERV1 4221 5149 -2564 1337 138 14 0 chr1 68911855 68912072 -213281592 + HERVH LTR ERV1 5600 5819 -1894 2524 68 47 21 chr1 68912072 68912452 -213281212 + HERVH LTR ERV1 7324 7713 0 1940 90 34 25 chr1 68912452 68912809 -213280855 + LTR7 LTR ERV1 1 404 -46 23 0 0 0 chr1 68912866 68912889 -213280775 + AT_rich Low_complexity Low_complexity 1 23 0 362 272 31 115 chr1 68913790 68913857 -213279807 - MIR SINE MIR -58 204 133 2440 66 13 0 chr1 68913857 68914159 -213279505 - AluSq SINE Alu -7 306 1 362 272 31 115 chr1 68914159 68914282 -213279382 - MIR SINE MIR -129 133 30 370 296 102 95 chr1 68914946 68915240 -213278424 - L2 LINE L2 -12 3260 2965 769 236 113 10 chr1 68915339 68915542 -213278122 + MIR SINE MIR 38 261 -1 25 0 0 0 chr1 68916597 68916622 -213277042 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 68917280 68917303 -213276361 + AT_rich Low_complexity Low_complexity 1 23 0 853 331 60 19 chr1 68917878 68918084 -213275580 + L2 LINE L2 2930 3159 -154 2180 118 0 0 chr1 68918084 68918380 -213275284 - AluSq SINE Alu -17 296 1 853 331 60 19 chr1 68918380 68918542 -213275122 + L2 LINE L2 3159 3313 0 23 24 0 24 chr1 68918629 68918645 -213275019 + AT_rich Low_complexity Low_complexity 1 16 -24 201 44 22 44 chr1 68918645 68918690 -213274974 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 23 24 0 24 chr1 68918690 68918714 -213274950 + AT_rich Low_complexity Low_complexity 16 40 0 26 30 0 0 chr1 68918828 68918861 -213274803 + AT_rich Low_complexity Low_complexity 1 33 0 5972 88 27 7 chr1 68919034 68920165 -213273499 - L1PA13 LINE L1 0 6163 4979 2286 78 3 43 chr1 68920165 68920487 -213273177 - AluY SINE Alu -2 309 1 5972 88 27 7 chr1 68920487 68921172 -213272492 - L1PA13 LINE L1 -1184 4979 4309 233 103 77 0 chr1 68922142 68922181 -213271483 + MER110A LTR ERV1 423 464 -4 25 31 0 0 chr1 68922285 68922317 -213271347 + AT_rich Low_complexity Low_complexity 1 32 0 1366 122 4 52 chr1 68922822 68923051 -213270613 + AluJo SINE Alu 81 298 -14 324 0 0 0 chr1 68923055 68923091 -213270573 + (TA)n Simple_repeat Simple_repeat 1 36 0 292 278 0 0 chr1 68923189 68923261 -213270403 - MIR SINE MIR -1 261 190 22 99 0 0 chr1 68923858 68923929 -213269735 + AT_rich Low_complexity Low_complexity 1 71 0 2266 84 3 19 chr1 68924715 68925023 -213268641 + AluSx SINE Alu 1 303 -9 2368 69 10 0 chr1 68925284 68925574 -213268090 + AluY SINE Alu 1 293 -18 1047 159 29 19 chr1 68925582 68925843 -213267821 + L1MC2 LINE L1 4725 6132 -212 1142 154 16 5 chr1 68925843 68926031 -213267633 + AluJb SINE Alu 71 260 -52 3517 82 10 14 chr1 68926190 68926687 -213266977 - L1MA3 LINE L1 -318 5987 5493 2253 95 0 0 chr1 68927557 68927852 -213265812 + AluSx SINE Alu 1 295 -17 206 75 0 50 chr1 68928377 68928417 -213265247 + (TAAAAA)n Simple_repeat Simple_repeat 5 42 0 22 0 0 0 chr1 68928839 68928861 -213264803 + AT_rich Low_complexity Low_complexity 1 22 0 413 241 0 0 chr1 68929435 68929522 -213264142 + MIR SINE MIR 162 248 -14 241 92 224 102 chr1 68929784 68929882 -213263782 - MIR SINE MIR -91 171 62 216 235 62 0 chr1 68930894 68930975 -213262689 + (CAGAGA)n Simple_repeat Simple_repeat 5 90 0 321 306 122 27 chr1 68931877 68932024 -213261640 + MIR3 SINE MIR 20 180 -28 331 284 75 30 chr1 68932369 68932503 -213261161 - MIR SINE MIR 0 262 123 656 112 0 0 chr1 68932823 68932921 -213260743 - AluJ SINE Alu -13 299 202 805 180 40 0 chr1 68932922 68933072 -213260592 - AluJ SINE Alu -156 156 1 298 268 188 18 chr1 68934268 68934380 -213259284 + MIR SINE MIR 13 143 -119 1779 169 66 0 chr1 68935182 68935502 -213258162 + MER47A DNA MER2_type 25 365 -1 1071 245 78 40 chr1 68935511 68936009 -213257655 + L1MEc LINE L1 1833 2349 -4047 583 295 114 4 chr1 68936136 68936390 -213257274 + L1MEc LINE L1 3340 3621 -2594 862 239 178 24 chr1 68936394 68936601 -213257063 + L1MEc LINE L1 4004 4178 -2037 1670 181 33 7 chr1 68936601 68936905 -213256759 + AluJb SINE Alu 1 312 0 862 239 178 24 chr1 68936905 68937196 -213256468 + L1MEc LINE L1 4178 4579 -1636 193 0 94 0 chr1 68937200 68937232 -213256432 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 706 23 0 0 chr1 68937235 68937321 -213256343 - L1PA3 LINE L1 -3 6152 6067 1440 177 8 4 chr1 68937620 68937886 -213255778 - L1PB4 LINE L1 -2 6154 5888 1607 129 0 0 chr1 68937995 68938212 -213255452 - AluSq SINE Alu -76 237 21 732 192 23 0 chr1 68938221 68938351 -213255313 - FLAM_C SINE Alu 0 133 1 290 47 23 0 chr1 68938354 68938397 -213255267 + L1MC2 LINE L1 6289 6332 -12 521 108 0 0 chr1 68938397 68938498 -213255166 + AluY SINE Alu 208 308 0 537 249 116 6 chr1 68938731 68938912 -213254752 + MIR SINE MIR 52 252 -10 2343 51 0 51 chr1 68940198 68940511 -213253153 - AluY SINE Alu -14 297 1 2311 129 30 46 chr1 68940879 68941214 -213252450 - L1MA8 LINE L1 -27 6264 5936 1611 160 23 40 chr1 68941214 68941514 -213252150 + AluJo SINE Alu 1 295 -17 2311 129 30 46 chr1 68941514 68941613 -213252051 - L1MA8 LINE L1 -355 5936 5837 25 0 0 0 chr1 68942351 68942376 -213251288 + AT_rich Low_complexity Low_complexity 1 25 0 2157 132 3 0 chr1 68942612 68942923 -213250741 + AluSx SINE Alu 1 312 0 1339 201 72 4 chr1 68943129 68943421 -213250243 + AluJo SINE Alu 1 310 0 2223 72 7 0 chr1 68943615 68943916 -213249748 + AluSc SINE Alu 1 303 0 1003 198 0 0 chr1 68945011 68945178 -213248486 - FAM SINE Alu -8 167 1 37 39 0 0 chr1 68945227 68945278 -213248386 + AT_rich Low_complexity Low_complexity 1 51 0 2232 100 0 3 chr1 68945649 68945940 -213247724 - AluSc SINE Alu -19 290 1 534 252 13 13 chr1 68946037 68946188 -213247476 + L1MCc LINE L1 97 247 -6176 1359 253 140 7 chr1 68946193 68946601 -213247063 + L2 LINE L2 2214 2675 -639 21 21 0 64 chr1 68947352 68947399 -213246265 + AT_rich Low_complexity Low_complexity 1 44 0 387 228 50 20 chr1 68948327 68948428 -213245236 + L2 LINE L2 2647 2750 -564 813 206 41 23 chr1 68948439 68948657 -213245007 + L1MCc LINE L1 52 273 -6150 556 151 72 0 chr1 68948648 68948787 -213244877 + L1MCc LINE L1 1782 1930 -5011 * 537 267 86 19 chr1 68948918 68949128 -213244536 + L2 LINE L2 2754 2977 -337 1618 251 110 22 chr1 68949202 68949693 -213243971 + MLT1H LTR MaLR 16 549 0 857 265 29 38 chr1 68949694 68950007 -213243657 + L2 LINE L2 3004 3313 0 1877 155 3 3 chr1 68950621 68950918 -213242746 + AluJo SINE Alu 2 298 -14 214 411 47 0 chr1 68951474 68951581 -213242083 - MIR SINE MIR -76 132 21 354 229 73 67 chr1 68951730 68951909 -213241755 + L1M4 LINE L1 4865 5044 -1102 1367 207 7 21 chr1 68951912 68952192 -213241472 + AluJo SINE Alu 7 282 -30 25 75 0 0 chr1 68952237 68952290 -213241374 + AT_rich Low_complexity Low_complexity 1 53 0 307 238 0 0 chr1 68952337 68952420 -213241244 - L1ME2 LINE L1 0 6166 6081 1742 146 76 0 chr1 68952594 68952869 -213240795 + AluSx SINE Alu 1 296 -16 1822 122 19 0 chr1 68953555 68953865 -213239799 - AluSx SINE Alu 0 325 11 248 0 31 0 chr1 68953921 68953953 -213239711 + (TG)n Simple_repeat Simple_repeat 1 33 0 1462 178 0 8 chr1 68953956 68954192 -213239472 - AluJb SINE Alu -78 234 1 234 62 0 0 chr1 68954224 68954256 -213239408 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 293 80 0 20 chr1 68954796 68954846 -213238818 + (CA)n Simple_repeat Simple_repeat 2 50 0 34 55 0 0 chr1 68957462 68957517 -213236147 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr1 68957637 68957660 -213236004 + AT_rich Low_complexity Low_complexity 1 23 0 326 231 67 48 chr1 68958194 68958298 -213235366 + L1ME3A LINE L1 6023 6128 -42 27 49 0 0 chr1 68958537 68958578 -213235086 + AT_rich Low_complexity Low_complexity 1 41 0 548 310 75 9 chr1 68958608 68958821 -213234843 + L2 LINE L2 2751 2977 -337 1330 211 0 0 chr1 68959017 68959249 -213234415 + Tigger3(Golem) DNA MER2_type 4 235 -2794 1950 150 39 0 chr1 68959250 68959583 -213234081 + MER7A DNA MER2_type 2 345 -1 4436 144 32 4 chr1 68959689 68960412 -213233252 + Tigger2 DNA MER2_type 1 743 -1975 1365 123 98 4 chr1 68960469 68960705 -213232959 + Tigger2 DNA MER2_type 2461 2718 0 512 301 35 53 chr1 68960786 68961211 -213232453 + L1MEd LINE L1 955 1414 -4862 550 237 45 51 chr1 68961711 68961867 -213231797 + MIR SINE MIR 98 252 -10 923 276 86 57 chr1 68961909 68962641 -213231023 + L1MEd LINE L1 2237 2946 -3183 1986 139 27 9 chr1 68962641 68962979 -213230685 + MER2 DNA MER2_type 1 344 0 923 276 86 57 chr1 68962979 68962997 -213230667 + L1MEd LINE L1 2946 2962 -3167 1912 163 32 3 chr1 68962997 68963335 -213230329 - MER7A DNA MER2_type 0 346 1 923 276 86 57 chr1 68963335 68963552 -213230112 + L1MEd LINE L1 2962 3233 -2896 376 113 0 16 chr1 68964063 68964125 -213229539 + AluS SINE Alu 2 62 -240 517 267 112 0 chr1 68964225 68964386 -213229278 + MIR SINE MIR 49 227 -35 21 57 0 0 chr1 68966047 68966082 -213227582 + AT_rich Low_complexity Low_complexity 1 35 0 3845 129 44 13 chr1 68966140 68966827 -213226837 + L1MA8 LINE L1 5584 6291 0 2068 149 15 9 chr1 68967903 68968245 -213225419 - MER2 DNA MER2_type 0 344 1 1647 185 14 3 chr1 68968421 68968718 -213224946 - AluJb SINE Alu -12 300 1 268 59 0 0 chr1 68969328 68969362 -213224302 - AluSp SINE Alu -192 111 78 1304 147 0 5 chr1 68969362 68969573 -213224091 - AluSc SINE Alu -99 210 1 668 183 17 0 chr1 68970159 68970274 -213223390 - MER20 DNA MER1_type 0 219 103 1679 150 31 14 chr1 68970357 68970469 -213223195 + AluJo SINE Alu 10 119 -193 243 0 0 0 chr1 68970469 68970496 -213223168 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 1679 150 31 14 chr1 68970496 68970669 -213222995 + AluJo SINE Alu 119 300 -12 1146 170 10 0 chr1 68970838 68971038 -213222626 + AluJb SINE Alu 21 222 -90 39 0 0 0 chr1 68972098 68972137 -213221527 + AT_rich Low_complexity Low_complexity 1 39 0 913 225 154 19 chr1 68972311 68972578 -213221086 + AluSp SINE Alu 1 303 0 2543 189 148 39 chr1 68972652 68973483 -213220181 - L1MC4 LINE L1 -5 8037 7116 1255 256 171 11 chr1 68973518 68974128 -213219536 - L1MC4a LINE L1 -1259 6549 5843 1597 154 30 3 chr1 68974423 68974721 -213218943 - L1MD2 LINE L1 -17 6342 6037 2170 96 26 13 chr1 68974729 68975031 -213218633 - AluSq SINE Alu -7 306 1 5257 203 29 27 chr1 68975426 68976723 -213216941 + L1MB4 LINE L1 4044 5354 -826 2335 75 0 47 chr1 68976723 68977043 -213216621 - AluY SINE Alu -6 305 1 5257 203 29 27 chr1 68977043 68977872 -213215792 + L1MB4 LINE L1 5354 6180 0 355 315 171 0 chr1 68978058 68978203 -213215461 - MER5A DNA MER1_type -12 177 8 584 307 100 17 chr1 68978203 68978434 -213215230 + MIR SINE MIR 3 252 -10 433 306 22 37 chr1 68979177 68979311 -213214353 - L2 LINE L2 -1 3271 3140 299 258 65 21 chr1 68981127 68981220 -213212444 + MER91C DNA MER1_type 2 98 -42 1110 153 119 31 chr1 68981922 68982216 -213211448 + MER33 DNA MER1_type 5 324 0 288 241 11 23 chr1 68982248 68982335 -213211329 + L1ME LINE L1 5726 5811 -310 793 232 0 18 chr1 68982390 68982558 -213211106 + AluJb SINE Alu 136 300 -12 22 80 0 0 chr1 68982676 68982726 -213210938 + AT_rich Low_complexity Low_complexity 1 50 0 28 91 0 0 chr1 68983865 68983942 -213209722 + AT_rich Low_complexity Low_complexity 1 77 0 486 288 49 43 chr1 68984817 68985001 -213208663 - MIR SINE MIR -77 185 1 270 136 0 0 chr1 68985353 68985397 -213208267 + (A)n Simple_repeat Simple_repeat 1 44 0 37 39 0 0 chr1 68985782 68985833 -213207831 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr1 68986570 68986593 -213207071 + AT_rich Low_complexity Low_complexity 1 23 0 457 324 33 60 chr1 68989605 68989661 -213204003 + L2 LINE L2 2915 2971 -301 5962 19 0 1 chr1 68989661 68990351 -213203313 - L1PA3 LINE L1 0 6155 5467 457 324 33 60 chr1 68990351 68990627 -213203037 + L2 LINE L2 2971 3238 -34 440 308 25 0 chr1 68990743 68990863 -213202801 - L2 LINE L2 -16 3256 3134 2158 91 20 3 chr1 68991801 68992099 -213201565 + AluSx SINE Alu 1 303 -9 1689 142 48 10 chr1 68992110 68992399 -213201265 + AluJo SINE Alu 1 300 -12 964 212 60 56 chr1 68992664 68992690 -213200974 - MIR SINE MIR 0 262 238 2130 125 0 3 chr1 68992690 68993001 -213200663 - AluSx SINE Alu -2 310 1 964 212 60 56 chr1 68993001 68993224 -213200440 - MIR SINE MIR -24 238 12 312 137 53 42 chr1 68993294 68993560 -213200104 + (TA)n Simple_repeat Simple_repeat 1 269 0 815 173 70 0 chr1 68995877 68996033 -213197631 - FRAM SINE Alu -9 167 1 2163 97 7 0 chr1 68996451 68996740 -213196924 + AluSg SINE Alu 1 291 -19 654 197 0 30 chr1 68997880 68998012 -213195652 + FLAM_A SINE Alu 2 129 -4 235 179 0 0 chr1 68999137 68999176 -213194488 - Alu SINE Alu -93 209 171 22 0 0 0 chr1 68999564 68999586 -213194078 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr1 69000154 69000190 -213193474 + AT_rich Low_complexity Low_complexity 1 36 0 731 182 149 7 chr1 69001288 69001442 -213192222 + MER5B DNA MER1_type 3 178 0 1089 195 38 30 chr1 69001559 69001821 -213191843 + L1MA4 LINE L1 6026 6289 -11 978 177 86 0 chr1 69002110 69002296 -213191368 + MER3 DNA MER1_type 3 204 -5 198 326 102 20 chr1 69002305 69002403 -213191261 + L2 LINE L2 3150 3255 -17 1572 225 122 12 chr1 69002744 69003259 -213190405 + L2 LINE L2 1700 2271 -1043 838 50 0 0 chr1 69003259 69003360 -213190304 + MER30 DNA MER1_type 1 101 -129 984 258 205 13 chr1 69003464 69003859 -213189805 + L2 LINE L2 2843 3313 0 2279 101 7 0 chr1 69004297 69004604 -213189060 + AluSq SINE Alu 1 309 -4 897 200 0 0 chr1 69004604 69004754 -213188910 + AluJo/FRAM SINE Alu 134 283 -29 324 295 33 25 chr1 69004882 69005004 -213188660 - L2 LINE L2 0 3313 3191 4547 182 74 103 chr1 69005058 69005923 -213187741 + L1MB7 LINE L1 3669 4558 -1626 1104 176 48 0 chr1 69005923 69006110 -213187554 + AluJb SINE Alu 98 293 -19 4547 182 74 103 chr1 69006110 69007353 -213186311 + L1MB7 LINE L1 4558 5836 -348 2125 129 0 0 chr1 69007353 69007648 -213186016 + AluSg SINE Alu 1 295 -15 342 0 0 0 chr1 69007649 69007687 -213185977 + (CA)n Simple_repeat Simple_repeat 2 39 0 4547 182 74 103 chr1 69007687 69007732 -213185932 + L1MB7 LINE L1 5836 5881 -303 1352 152 158 37 chr1 69007732 69008080 -213185584 + MLT1B LTR MaLR 1 390 0 4547 182 74 103 chr1 69008080 69008327 -213185337 + L1MB7 LINE L1 5881 6169 -15 228 135 0 0 chr1 69209402 69209439 -212984225 + (CCG)n Simple_repeat Simple_repeat 3 39 0 22 35 0 0 chr1 69210664 69210693 -212982971 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr1 69212709 69212738 -212980926 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr1 69215330 69215359 -212978305 + (T)n Simple_repeat Simple_repeat 1 29 0 25 0 0 0 chr1 69218660 69218685 -212974979 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr1 69218719 69218750 -212974914 + AT_rich Low_complexity Low_complexity 1 31 0 245 314 146 45 chr1 69220877 69221097 -212972567 - MIR SINE MIR -6 256 15 205 214 18 0 chr1 69221572 69221628 -212972036 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 29 0 0 chr1 69221755 69221789 -212971875 + AT_rich Low_complexity Low_complexity 1 34 0 2005 121 34 0 chr1 69221851 69222148 -212971516 - AluSp SINE Alu -6 307 1 2356 102 0 0 chr1 69222189 69222494 -212971170 - AluSg SINE Alu -4 306 2 192 356 78 9 chr1 69225323 69225438 -212968226 - MIR SINE MIR -134 128 6 363 265 121 15 chr1 69225476 69225608 -212968056 - MIR SINE MIR -71 191 46 1387 222 3 10 chr1 69226252 69226540 -212967124 - AluJo SINE Alu -26 286 1 2381 93 3 0 chr1 69226758 69227059 -212966605 + AluSp SINE Alu 1 302 -11 426 279 48 126 chr1 69228937 69229270 -212964394 + L2 LINE L2 2954 3260 -12 183 80 0 0 chr1 69233795 69233820 -212959844 + (A)n Simple_repeat Simple_repeat 1 25 0 222 167 0 0 chr1 69234253 69234313 -212959351 + CT-rich Low_complexity Low_complexity 2 61 0 2378 79 0 0 chr1 69235520 69235811 -212957853 + AluSc SINE Alu 1 291 -18 807 62 0 0 chr1 69236298 69236395 -212957269 + AluSg SINE Alu 36 132 -178 212 308 64 77 chr1 69236761 69236809 -212956855 + MIR SINE MIR 1 48 -214 2184 92 10 3 chr1 69236809 69237101 -212956563 - AluSq SINE Alu -19 294 1 212 308 64 77 chr1 69237101 69237208 -212956456 + MIR SINE MIR 48 154 -108 297 311 50 106 chr1 69237258 69237385 -212956279 - L2 LINE L2 -51 3221 3088 267 103 0 0 chr1 69237385 69237424 -212956240 + (TA)n Simple_repeat Simple_repeat 1 39 0 297 311 50 106 chr1 69237424 69237617 -212956047 - L2 LINE L2 -184 3088 2919 2119 142 33 6 chr1 69237661 69237992 -212955672 - MER7A DNA MER2_type -1 345 8 211 296 0 14 chr1 69238215 69238286 -212955378 + GA-rich Low_complexity Low_complexity 1 70 0 26 0 0 0 chr1 69238456 69238482 -212955182 + AT_rich Low_complexity Low_complexity 1 26 0 2060 144 3 0 chr1 69239119 69239425 -212954239 + AluSx SINE Alu 1 307 -5 372 257 128 0 chr1 69239500 69239609 -212954055 + MLT1J LTR MaLR 95 217 -294 1790 167 3 25 chr1 69239618 69240030 -212953634 + AluJo SINE Alu 1 405 0 466 105 9 38 chr1 69240050 69240155 -212953509 + (GAAA)n Simple_repeat Simple_repeat 1 102 0 226 295 201 22 chr1 69240810 69240949 -212952715 + L2 LINE L2 3146 3309 -4 216 333 0 46 chr1 69241153 69241240 -212952424 - MIR SINE MIR -110 152 70 1991 128 4 0 chr1 69241518 69241826 -212951838 + AluSx SINE Alu 1 309 0 357 274 69 0 chr1 69241863 69241965 -212951699 - MIR3 SINE MIR -23 185 77 1877 143 0 0 chr1 69242303 69242589 -212951075 - AluJb SINE Alu -26 286 1 284 248 54 81 chr1 69242635 69242784 -212950880 + MIR SINE MIR 74 218 -44 1638 193 20 7 chr1 69243111 69243406 -212950258 + AluJb SINE Alu 1 299 -13 839 151 67 73 chr1 69243406 69243585 -212950079 + AluJb SINE Alu 134 311 -1 231 183 56 56 chr1 69244405 69244476 -212949188 - AluJ/FRAM SINE Alu -3 299 229 297 0 0 0 chr1 69244533 69244566 -212949098 + (TG)n Simple_repeat Simple_repeat 2 34 0 489 189 44 0 chr1 69244592 69244682 -212948982 - FRAM SINE Alu -9 167 74 305 182 0 0 chr1 69244697 69244752 -212948912 + L1MC4 LINE L1 6638 6692 -1350 2637 49 0 0 chr1 69244754 69245058 -212948606 - AluY SINE Alu -7 304 1 1995 146 25 25 chr1 69245058 69245421 -212948243 - L1MB3 LINE L1 -45 6138 5776 216 250 29 0 chr1 69245421 69245489 -212948175 + (TA)n Simple_repeat Simple_repeat 2 71 0 2208 130 0 0 chr1 69245499 69245806 -212947858 + AluSx SINE Alu 1 307 -5 874 99 53 46 chr1 69245836 69245988 -212947676 - L1MB3 LINE L1 -432 5739 5587 259 288 73 90 chr1 69246071 69246143 -212947521 + MIR3 SINE MIR 34 106 -102 1516 198 50 0 chr1 69246143 69246426 -212947238 + AluJb SINE Alu 3 299 -13 259 288 73 90 chr1 69246426 69246530 -212947134 + MIR3 SINE MIR 106 207 -1 328 341 37 23 chr1 69246697 69246914 -212946750 - L2 LINE L2 -436 2878 2659 2440 70 7 0 chr1 69246960 69247262 -212946402 - AluY SINE Alu -7 304 1 797 149 0 9 chr1 69247543 69247657 -212946007 + AluJ SINE Alu 3 115 -187 684 105 0 32 chr1 69247658 69247753 -212945911 + AluJ SINE Alu 198 289 -23 2073 113 17 3 chr1 69247756 69248049 -212945615 + AluSx SINE Alu 1 297 -15 26 0 0 0 chr1 69248237 69248263 -212945401 + AT_rich Low_complexity Low_complexity 1 26 0 234 276 17 17 chr1 69249065 69249123 -212944541 - L2 LINE L2 -15 3257 3200 21 0 0 0 chr1 69249443 69249464 -212944200 + AT_rich Low_complexity Low_complexity 1 21 0 1762 185 10 7 chr1 69249564 69249867 -212943797 - AluJb SINE Alu -8 304 1 2041 104 6 92 chr1 69249871 69250209 -212943455 - AluSx SINE Alu -3 309 1 2130 108 0 0 chr1 69250352 69250661 -212943003 + AluSc SINE Alu 3 311 0 1347 113 16 0 chr1 69251700 69251886 -212941778 + AluSq SINE Alu 1 189 -124 806 164 8 0 chr1 69251951 69252073 -212941591 + AluSg/x SINE Alu 177 299 -10 2149 122 10 0 chr1 69252259 69252553 -212941111 + AluSx SINE Alu 1 297 -15 2258 66 35 0 chr1 69253744 69254033 -212939631 + AluSq SINE Alu 1 299 -14 28 0 0 0 chr1 69254183 69254211 -212939453 + AT_rich Low_complexity Low_complexity 1 28 0 333 274 131 29 chr1 69255160 69255335 -212938329 + MIR3 SINE MIR 11 203 -5 908 248 47 28 chr1 69255845 69256099 -212937565 + MIR SINE MIR 4 262 0 252 108 14 40 chr1 69258107 69258181 -212935483 + (CAAAAA)n Simple_repeat Simple_repeat 1 72 0 22 0 0 0 chr1 69259894 69259916 -212933748 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr1 69260887 69260936 -212932728 + GC_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr1 69260962 69260985 -212932679 + GC_rich Low_complexity Low_complexity 1 23 0 592 217 35 7 chr1 69261933 69262076 -212931588 + MIR SINE MIR 78 224 -38 2062 110 0 41 chr1 69262113 69262432 -212931232 - AluSx SINE Alu -6 306 1 2204 116 13 0 chr1 69262639 69262941 -212930723 + AluSx SINE Alu 1 306 -6 1156 209 33 42 chr1 69262953 69263259 -212930405 + AluJb SINE Alu 9 311 -1 924 179 0 0 chr1 69263380 69263548 -212930116 - FRAM SINE Alu 0 168 1 196 195 0 0 chr1 69263550 69263591 -212930073 - MIR SINE MIR -112 150 110 21 0 0 31 chr1 69263621 69263638 -212930026 + AT_rich Low_complexity Low_complexity 1 18 -13 2083 105 7 30 chr1 69263638 69263942 -212929722 + AluSx SINE Alu 1 297 -15 21 0 0 31 chr1 69263942 69263956 -212929708 + AT_rich Low_complexity Low_complexity 18 31 0 849 230 0 6 chr1 69264002 69264176 -212929488 - FAM SINE Alu -1 174 2 369 281 58 36 chr1 69264215 69264407 -212929257 - MIR SINE MIR -25 237 43 30 27 0 0 chr1 69264698 69264735 -212928929 + AT_rich Low_complexity Low_complexity 1 37 0 2030 120 17 14 chr1 69265979 69266270 -212927394 - AluSg SINE Alu -18 292 1 378 0 0 0 chr1 69267773 69267815 -212925849 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 68 0 0 chr1 69267986 69268030 -212925634 + GC_rich Low_complexity Low_complexity 1 44 0 781 244 91 12 chr1 69269478 69269720 -212923944 - MIR SINE MIR -1 261 1 26 66 0 26 chr1 69269741 69269759 -212923905 + AT_rich Low_complexity Low_complexity 1 18 -56 2431 66 20 0 chr1 69269759 69270063 -212923601 - AluY SINE Alu -1 310 1 26 66 0 26 chr1 69270063 69270120 -212923544 + AT_rich Low_complexity Low_complexity 18 74 0 1131 192 19 38 chr1 69270313 69270534 -212923130 + L1PB4 LINE L1 5899 6116 -40 1932 153 3 3 chr1 69270534 69270863 -212922801 + AluSx SINE Alu 1 312 0 1131 192 19 38 chr1 69270863 69270902 -212922762 + L1PB4 LINE L1 6116 6154 -2 236 111 0 0 chr1 69271183 69271219 -212922445 - L1P4 LINE L1 -340 5828 5793 725 249 114 5 chr1 69271479 69271868 -212921796 + L1ME4a LINE L1 5520 5988 -133 277 154 9 127 chr1 69271878 69271933 -212921731 + L1ME4a LINE L1 6020 6058 -63 2174 120 0 0 chr1 69271933 69272245 -212921419 - AluSx SINE Alu 0 312 1 277 154 9 127 chr1 69272245 69272298 -212921366 + L1ME4a LINE L1 6058 6116 -5 629 168 10 0 chr1 69272363 69272464 -212921200 + Tigger3(Golem) DNA MER2_type 38 139 -2890 1564 108 24 0 chr1 69272491 69272704 -212920960 + Tigger3(Golem) DNA MER2_type 2811 3028 -1 3441 261 94 32 chr1 69273352 69274540 -212919124 + L1ME3A LINE L1 2220 3565 -2581 1740 181 7 3 chr1 69274540 69274828 -212918836 - AluJb SINE Alu -23 289 1 3441 261 94 32 chr1 69274828 69275471 -212918193 + L1ME3A LINE L1 3565 4166 -1980 1524 135 57 12 chr1 69275477 69275722 -212917942 - Tigger3(Golem) DNA MER2_type -2 3027 2772 468 162 0 0 chr1 69275719 69275793 -212917871 - Tigger3(Golem) DNA MER2_type -2887 142 69 * 2324 99 3 0 chr1 69275793 69276087 -212917577 - AluSg SINE Alu -15 295 1 22 35 0 0 chr1 69276089 69276118 -212917546 + AT_rich Low_complexity Low_complexity 1 29 0 928 186 6 0 chr1 69276118 69276274 -212917390 - FRAM SINE Alu -20 156 1 463 189 0 0 chr1 69276278 69276352 -212917312 - Tigger3(Golem) DNA MER2_type -2955 74 1 1788 240 89 53 chr1 69276352 69276558 -212917106 + L1ME3A LINE L1 4170 4367 -1803 2038 152 0 0 chr1 69276558 69276860 -212916804 + AluSx SINE Alu 1 302 -10 243 0 0 0 chr1 69276863 69276890 -212916774 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1788 240 89 53 chr1 69276890 69277804 -212915860 + L1ME3A LINE L1 4368 5247 -923 2148 121 0 0 chr1 69277804 69278093 -212915571 + AluSx SINE Alu 1 289 -23 330 87 0 0 chr1 69278093 69278139 -212915525 + (TA)n Simple_repeat Simple_repeat 2 47 0 1788 240 89 53 chr1 69278139 69278574 -212915090 + L1ME3A LINE L1 5247 5811 -359 1568 176 46 13 chr1 69278574 69278876 -212914788 + AluJo SINE Alu 1 312 0 1788 240 89 53 chr1 69278876 69279019 -212914645 + L1ME3A LINE L1 5811 5947 -223 384 291 47 14 chr1 69279143 69279291 -212914373 + L1ME3A LINE L1 5995 6147 -23 2204 103 0 3 chr1 69279649 69279940 -212913724 + AluJb SINE Alu 6 295 -17 216 313 15 0 chr1 69280130 69280197 -212913467 - L2 LINE L2 -48 3265 3198 1926 148 3 7 chr1 69280584 69280881 -212912783 - AluJo SINE Alu -16 296 1 211 250 56 14 chr1 69281146 69281218 -212912446 + L2 LINE L2 3229 3303 -10 399 57 0 0 chr1 69281408 69281461 -212912203 - Alu SINE Alu -3 297 245 309 75 0 0 chr1 69281461 69281501 -212912163 - Alu SINE Alu -16 285 246 2211 115 0 0 chr1 69281501 69281788 -212911876 - AluSq SINE Alu -26 287 1 975 283 29 16 chr1 69281833 69282141 -212911523 + L3 LINE CR1 617 928 -649 2269 86 0 0 chr1 69282381 69282727 -212910937 + AluY SINE Alu 1 311 0 308 236 176 36 chr1 69282852 69283017 -212910647 + MIR SINE MIR 75 262 0 218 236 18 0 chr1 69283377 69283432 -212910232 + L3 LINE CR1 1243 1298 -279 1876 159 6 13 chr1 69283679 69283993 -212909671 - AluSx SINE Alu 0 312 1 240 330 9 28 chr1 69284026 69284132 -212909532 - MER5A DNA MER1_type -22 167 64 602 307 101 27 chr1 69284195 69284801 -212908863 - L2 LINE L2 -2 3311 2658 2088 119 7 10 chr1 69284904 69285199 -212908465 - AluSx SINE Alu -18 294 1 276 316 23 15 chr1 69285203 69285336 -212908328 - MIR SINE MIR -50 212 79 468 276 58 31 chr1 69285347 69285409 -212908255 + MER102b DNA MER1_type 100 159 -1269 1266 135 47 159 chr1 69285409 69285749 -212907915 + AluJo SINE Alu 1 302 0 468 276 58 31 chr1 69285749 69285911 -212907753 + MER102b DNA MER1_type 159 330 -11 1108 76 5 28 chr1 69286112 69286324 -212907340 + (TTTC)n Simple_repeat Simple_repeat 1 207 0 1844 131 24 59 chr1 69286325 69286699 -212906965 - L1MA8 LINE L1 0 6291 5931 1078 234 74 55 chr1 69286726 69287051 -212906613 + MLT1B LTR MaLR 1 331 -59 1241 116 0 11 chr1 69287052 69287233 -212906431 - AluSg/x SINE Alu -14 296 118 262 158 20 0 chr1 69287233 69287283 -212906381 + MLT1A1 LTR MaLR 320 365 0 1107 226 15 15 chr1 69287565 69287826 -212905838 + MIR SINE MIR 2 262 0 1798 136 66 0 chr1 69288161 69288434 -212905230 + AluSg SINE Alu 1 291 -19 2016 135 0 3 chr1 69288573 69288862 -212904802 - AluSx SINE Alu -18 294 7 237 342 17 17 chr1 69288869 69288986 -212904678 + MER5A DNA MER1_type 51 167 -22 2030 121 0 7 chr1 69289438 69289719 -212903945 + AluSx SINE Alu 1 279 -33 261 83 0 0 chr1 69289719 69289755 -212903909 + (GAA)n Simple_repeat Simple_repeat 1 36 0 233 164 14 68 chr1 69290777 69290850 -212902814 + L2 LINE L2 2835 2903 -410 1044 188 0 0 chr1 69290855 69291025 -212902639 - AluSg/x SINE Alu -18 294 125 2111 126 7 0 chr1 69291030 69291316 -212902348 - AluSx SINE Alu -24 288 1 288 0 0 0 chr1 69291445 69291477 -212902187 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 332 262 86 64 chr1 69291540 69291727 -212901937 - L2 LINE L2 -102 3211 3021 332 263 97 32 chr1 69291864 69292050 -212901614 + L2 LINE L2 3115 3312 -1 566 226 163 0 chr1 69292263 69292453 -212901211 + MIR SINE MIR 32 252 -10 475 276 44 8 chr1 69292723 69292892 -212900772 + MIR SINE MIR 23 198 -63 2320 108 0 0 chr1 69293141 69293446 -212900218 + AluSp SINE Alu 1 305 -8 434 311 67 10 chr1 69294508 69294701 -212898963 - MIR SINE MIR -12 250 47 2119 191 64 29 chr1 69294789 69295270 -212898394 + MLT1D LTR MaLR 1 498 -7 237 196 0 0 chr1 69295481 69295527 -212898137 + L2 LINE L2 3268 3313 0 316 269 0 21 chr1 69296089 69296182 -212897482 - L2 LINE L2 0 3313 3223 1733 111 42 121 chr1 69296364 69296696 -212896968 + AluSg SINE Alu 1 306 -4 238 273 0 0 chr1 69296699 69296743 -212896921 - L2 LINE L2 -28 3244 3201 234 255 0 0 chr1 69297633 69297684 -212895980 + Charlie8 DNA MER1_type 2367 2417 0 187 342 205 0 chr1 69297684 69297801 -212895863 - MIR3 SINE MIR -48 160 20 33 25 0 0 chr1 69300641 69300681 -212892983 + AT_rich Low_complexity Low_complexity 1 40 0 1413 164 35 48 chr1 69300685 69300997 -212892667 - L1MA9 LINE L1 -6 6306 5999 24 0 0 0 chr1 69301495 69301519 -212892145 + AT_rich Low_complexity Low_complexity 1 24 0 301 330 109 8 chr1 69302237 69302476 -212891188 + L3 LINE CR1 1254 1516 -61 2354 99 0 0 chr1 69304240 69304542 -212889122 + AluSc SINE Alu 1 302 -7 302 202 84 59 chr1 69305741 69305860 -212887804 + MIR SINE MIR 27 148 -60 306 0 0 0 chr1 69305995 69306029 -212887635 + (T)n Simple_repeat Simple_repeat 1 34 0 194 152 0 0 chr1 69306091 69306124 -212887540 + MIR3 SINE MIR 170 202 -6 182 256 0 0 chr1 69306866 69306909 -212886755 + MIR SINE MIR 218 260 -2 259 335 36 36 chr1 69307203 69307370 -212886294 + MIR SINE MIR 19 185 -77 227 259 44 32 chr1 69307367 69307465 -212886199 - L2 LINE L2 -4 3268 3131 * 933 191 25 0 chr1 69307465 69307627 -212886037 + FRAM SINE Alu 1 166 0 227 259 44 32 chr1 69307627 69307665 -212885999 - L2 LINE L2 -141 3131 3095 284 261 99 28 chr1 69307809 69307951 -212885713 - L2 LINE L2 -467 2847 2696 435 286 19 7 chr1 69308090 69308234 -212885430 + MIR SINE MIR 20 167 -63 562 271 88 6 chr1 69309081 69309251 -212884413 - MIR SINE MIR -74 188 5 547 192 46 33 chr1 69309292 69309443 -212884221 - MIR SINE MIR -90 172 20 354 290 62 35 chr1 69310050 69310195 -212883469 - L2 LINE L2 -26 3246 3098 1159 244 30 93 chr1 69310878 69311435 -212882229 - L2 LINE L2 -399 2915 2394 2413 97 0 0 chr1 69311645 69311944 -212881720 - AluSc SINE Alu -10 299 1 186 218 0 73 chr1 69312097 69312152 -212881512 + MER5A DNA MER1_type 99 149 -40 360 305 80 35 chr1 69312590 69312790 -212880874 + MIR SINE MIR 48 256 -6 527 286 51 64 chr1 69312874 69312980 -212880684 + MIR SINE MIR 31 137 -125 2213 83 7 0 chr1 69312980 69313293 -212880371 + AluSc SINE Alu 1 315 0 527 286 51 64 chr1 69313293 69313419 -212880245 + MIR SINE MIR 137 261 -1 1729 176 7 0 chr1 69313554 69313849 -212879815 - AluJo SINE Alu -5 307 11 306 0 0 0 chr1 69313856 69313890 -212879774 + (T)n Simple_repeat Simple_repeat 1 34 0 249 288 80 56 chr1 69313910 69314035 -212879629 - MIR SINE MIR -78 130 2 493 278 98 30 chr1 69314156 69314390 -212879274 - MIR SINE MIR -11 251 2 267 83 0 0 chr1 69314500 69314536 -212879128 - MADE1 DNA Mariner 0 80 45 321 261 0 0 chr1 69314536 69314605 -212879059 + MIR SINE MIR 79 147 -115 3164 173 56 51 chr1 69314745 69314792 -212878872 - L1MB7 LINE L1 -16 6168 6123 721 219 0 0 chr1 69314792 69314920 -212878744 - FLAM_A SINE Alu -5 128 1 3164 173 56 51 chr1 69314920 69315364 -212878300 - L1MB7 LINE L1 -61 6123 5671 2462 96 0 0 chr1 69315364 69315676 -212877988 - AluSx SINE Alu 0 312 1 3164 173 56 51 chr1 69315676 69315867 -212877797 - L1MB7 LINE L1 -513 5671 5482 912 220 16 0 chr1 69316259 69316450 -212877214 - MIR SINE MIR -27 235 42 1986 167 31 6 chr1 69317003 69317356 -212876308 + MLT1A1 LTR MaLR 4 365 0 895 307 112 39 chr1 69317515 69318356 -212875308 + L2 LINE L2 2412 3308 -5 273 267 38 53 chr1 69318530 69318661 -212875003 + L2 LINE L2 3009 3137 -176 206 278 67 44 chr1 69318946 69319036 -212874628 + MIR SINE MIR 120 211 -51 1068 271 107 19 chr1 69319557 69320190 -212873474 - L2 LINE L2 -26 3287 2505 270 261 56 32 chr1 69320262 69320424 -212873240 - MIR SINE MIR -55 207 36 193 317 17 0 chr1 69321888 69321948 -212871716 + L2 LINE L2 3154 3214 -58 243 274 0 0 chr1 69322260 69322322 -212871342 + MIR SINE MIR 200 261 -1 1612 224 82 8 chr1 69322691 69323093 -212870571 - MER63B DNA MER1_type 0 436 5 246 62 0 0 chr1 69323307 69323339 -212870325 + (A)n Simple_repeat Simple_repeat 1 32 0 203 185 0 19 chr1 69323577 69323631 -212870033 + GA-rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr1 69324590 69324624 -212869040 + AT_rich Low_complexity Low_complexity 1 34 0 1454 129 0 0 chr1 69324720 69324922 -212868742 - AluSg/x SINE Alu -15 295 94 232 226 0 107 chr1 69324933 69325017 -212868647 - MER112 DNA MER1_type -177 83 9 1938 157 0 10 chr1 69325275 69325574 -212868090 + AluSx SINE Alu 1 296 -16 503 278 14 0 chr1 69325632 69325776 -212867888 + MIR SINE MIR 77 222 -40 190 305 12 24 chr1 69325852 69325934 -212867730 - L2 LINE L2 -8 3305 3225 25 0 0 0 chr1 69325949 69325974 -212867690 + AT_rich Low_complexity Low_complexity 1 25 0 356 282 68 43 chr1 69325999 69326116 -212867548 + L2 LINE L2 3190 3309 -4 * 369 259 18 9 chr1 69326114 69326226 -212867438 - MIR SINE MIR -31 231 119 205 295 148 20 chr1 69326781 69326930 -212866734 - L3 LINE CR1 -66 1511 1344 231 114 0 0 chr1 69327803 69327838 -212865826 + (GA)n Simple_repeat Simple_repeat 2 36 0 197 350 48 19 chr1 69329207 69329310 -212864354 + L2 LINE L2 3154 3259 -13 2187 92 35 0 chr1 69329357 69329641 -212864023 + AluSc SINE Alu 1 294 -15 202 143 0 0 chr1 69329964 69329999 -212863665 - MIR SINE MIR -76 132 98 185 182 45 0 chr1 69330103 69330147 -212863517 + L2 LINE L2 3210 3255 -17 237 229 0 0 chr1 69330179 69330227 -212863437 - MIR SINE MIR -131 77 30 291 250 144 3 chr1 69330626 69330749 -212862915 + MIR SINE MIR 18 164 -79 184 283 102 57 chr1 69330811 69330988 -212862676 + L3 LINE CR1 1329 1513 -64 2240 102 0 3 chr1 69331031 69331334 -212862330 - AluSx SINE Alu -10 302 1 739 50 40 0 chr1 69331581 69331680 -212861984 + AluY SINE Alu 2 104 -207 2827 189 66 27 chr1 69331791 69332233 -212861431 - L1MB7 LINE L1 -44 6140 5664 2382 99 0 0 chr1 69332233 69332536 -212861128 - AluSx SINE Alu -9 303 1 2827 189 66 27 chr1 69332536 69332727 -212860937 - L1MB7 LINE L1 -520 5664 5482 343 236 0 0 chr1 69333120 69333192 -212860472 - MIR SINE MIR -27 235 164 2312 77 0 0 chr1 69333195 69333480 -212860184 + AluY SINE Alu 20 304 -7 244 267 72 82 chr1 69333576 69333771 -212859893 + MIR SINE MIR 20 212 -50 285 325 46 20 chr1 69333898 69334049 -212859615 - L2 LINE L2 0 3313 3159 403 288 195 79 chr1 69334782 69335289 -212858375 + MLT1K LTR MaLR 23 588 0 252 202 34 0 chr1 69335334 69335453 -212858211 + (TTATA)n Simple_repeat Simple_repeat 1 123 0 298 361 16 0 chr1 69335466 69335626 -212858038 - MIR SINE MIR -59 203 39 347 338 75 22 chr1 69335803 69336081 -212857583 + L2 LINE L2 2566 2858 -456 441 284 96 86 chr1 69336183 69336475 -212857189 + L2 LINE L2 2977 3271 -1 741 173 8 15 chr1 69336494 69336627 -212857037 + FLAM_C SINE Alu 1 132 -1 225 210 0 0 chr1 69337461 69337523 -212856141 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 218 279 7 30 chr1 69337679 69337806 -212855858 - L2 LINE L2 -303 3010 2891 211 220 20 20 chr1 69337810 69337860 -212855804 - L2 LINE L2 -9 3263 3214 181 302 0 16 chr1 69338417 69338480 -212855184 + L2 LINE L2 3002 3063 -209 341 293 6 73 chr1 69338600 69338764 -212854900 + L2 LINE L2 3108 3260 -12 639 258 5 7 chr1 69338861 69339028 -212854636 + MLT1H LTR MaLR 1 209 -340 597 219 71 7 chr1 69339005 69339160 -212854504 + MLT1H LTR MaLR 385 549 0 * 434 248 33 16 chr1 69340201 69340322 -212853342 - MIR SINE MIR -63 145 23 419 258 16 16 chr1 69340417 69340541 -212853123 - MIR SINE MIR -43 219 96 314 284 27 27 chr1 69340689 69340837 -212852827 + MIR SINE MIR 44 191 -71 216 228 0 0 chr1 69340840 69340897 -212852767 + (TG)n Simple_repeat Simple_repeat 2 58 0 373 297 69 6 chr1 69341105 69341280 -212852384 - MIR3 SINE MIR -5 203 18 196 269 0 0 chr1 69341623 69341675 -212851989 - MIR SINE MIR -159 103 52 320 238 9 0 chr1 69341693 69341798 -212851866 + (TCCA)n Simple_repeat Simple_repeat 3 108 0 247 300 90 10 chr1 69341800 69341900 -212851764 - L2 LINE L2 -5 3267 3160 441 0 0 0 chr1 69342304 69342353 -212851311 + (TG)n Simple_repeat Simple_repeat 2 50 0 3916 146 28 1 chr1 69343333 69343611 -212850053 + L1MB1 LINE L1 5501 5770 -398 186 43 0 0 chr1 69343611 69343634 -212850030 + (CA)n Simple_repeat Simple_repeat 2 24 0 3916 146 28 1 chr1 69343634 69344006 -212849658 + L1MB1 LINE L1 5770 6168 0 454 302 134 0 chr1 69344527 69344699 -212848965 - MER117 DNA MER1_type 0 197 3 2433 119 16 21 chr1 69345844 69346221 -212847443 + THE1C LTR MaLR 1 375 0 10255 125 12 40 chr1 69346221 69346628 -212847036 + THE1C-int LTR MaLR 1 418 -1162 2160 120 0 46 chr1 69346628 69346773 -212846891 + AluSx SINE Alu 3 153 -159 2335 112 0 0 chr1 69346773 69347069 -212846595 + AluSc SINE Alu 1 296 -13 2160 120 0 46 chr1 69347069 69347248 -212846416 + AluSx SINE Alu 153 312 0 10255 125 12 40 chr1 69347248 69348459 -212845205 + THE1C-int LTR MaLR 418 1574 -6 2467 104 8 31 chr1 69348464 69348848 -212844816 + THE1C LTR MaLR 1 375 0 202 240 210 20 chr1 69348881 69348981 -212844683 + L2 LINE L2 3149 3267 -5 713 292 127 28 chr1 69350145 69350857 -212842807 + L2 LINE L2 2534 3313 0 391 275 97 29 chr1 69350949 69351156 -212842508 + MIR SINE MIR 28 248 -14 1724 174 0 42 chr1 69351277 69351587 -212842077 - AluJb SINE Alu -15 297 1 189 301 107 19 chr1 69352646 69352749 -212840915 + L2 LINE L2 3138 3249 -23 195 167 0 0 chr1 69352761 69352803 -212840861 + GA-rich Low_complexity Low_complexity 2 43 0 449 306 96 0 chr1 69352817 69352974 -212840690 + MIR3 SINE MIR 33 204 -4 2121 232 149 18 chr1 69352986 69353658 -212840006 - MER20B DNA MER1_type -3 780 21 734 263 29 11 chr1 69353702 69353877 -212839787 + MER45A DNA AcHobo 1 178 0 298 315 151 20 chr1 69355803 69355949 -212837715 + MER5A DNA MER1_type 19 183 -6 194 394 80 0 chr1 69355964 69356101 -212837563 + L2 LINE L2 3119 3266 -6 1586 227 21 64 chr1 69357297 69357826 -212835838 + Charlie4a DNA MER1_type 3 508 0 323 315 70 7 chr1 69357885 69358028 -212835636 + MIR SINE MIR 20 171 -91 351 292 153 5 chr1 69359111 69359313 -212834351 - MIR SINE MIR -11 251 20 308 193 0 0 chr1 69359565 69359622 -212834042 - MIR SINE MIR -117 145 89 316 343 30 12 chr1 69361394 69361560 -212832104 + MIR SINE MIR 20 188 -74 271 262 47 9 chr1 69362954 69363061 -212830603 - MIR3 SINE MIR -11 197 87 343 213 40 62 chr1 69363168 69363292 -212830372 - MIR SINE MIR -56 152 31 336 281 156 6 chr1 69363845 69364005 -212829659 + MIR SINE MIR 24 207 -55 802 116 33 0 chr1 69364783 69364904 -212828760 - AluSg/x SINE Alu 0 310 186 294 336 50 14 chr1 69365298 69365438 -212828226 + MIR SINE MIR 48 192 -70 231 347 8 8 chr1 69366412 69366536 -212827128 + L2 LINE L2 2698 2821 -493 285 333 37 22 chr1 69366977 69367112 -212826552 + L2 LINE L2 3134 3270 -2 2146 117 0 0 chr1 69367976 69368284 -212825380 - AluSx SINE Alu 0 308 1 200 234 21 0 chr1 69368350 69368397 -212825267 + (TATG)n Simple_repeat Simple_repeat 3 50 0 2405 100 7 0 chr1 69368979 69369289 -212824375 + AluSp SINE Alu 1 312 -1 316 358 37 37 chr1 69369811 69370132 -212823532 + L2 LINE L2 2471 2791 -523 232 285 72 88 chr1 69370249 69370442 -212823222 + L2 LINE L2 2994 3183 -89 382 305 8 8 chr1 69370557 69370685 -212822979 + L2 LINE L2 3184 3311 -2 328 293 17 77 chr1 69370865 69371046 -212822618 + MER5A DNA MER1_type 2 171 -18 213 292 14 14 chr1 69371053 69371125 -212822539 + L3 LINE CR1 1399 1470 -107 191 200 55 18 chr1 69371194 69371249 -212822415 + L2 LINE L2 3216 3272 0 1331 226 66 41 chr1 69372258 69372275 -212821389 + MLT1C LTR MaLR 45 60 -407 2590 77 12 82 chr1 69372275 69372680 -212820984 + MER51B LTR ERV1 1 377 0 1331 226 66 41 chr1 69372680 69373067 -212820597 + MLT1C LTR MaLR 60 467 0 382 241 55 41 chr1 69373243 69373388 -212820276 - MIR SINE MIR -5 257 111 760 303 14 0 chr1 69374244 69374465 -212819199 - MIR SINE MIR -10 252 29 189 319 22 22 chr1 69374670 69374761 -212818903 + MIR SINE MIR 160 250 -12 333 0 0 0 chr1 69374853 69374890 -212818774 + (TG)n Simple_repeat Simple_repeat 2 38 0 327 130 0 0 chr1 69376746 69376800 -212816864 + (TC)n Simple_repeat Simple_repeat 1 54 0 297 0 0 0 chr1 69377667 69377700 -212815964 + (TG)n Simple_repeat Simple_repeat 1 33 0 381 75 0 0 chr1 69377700 69377753 -212815911 + (GA)n Simple_repeat Simple_repeat 2 54 0 186 344 161 11 chr1 69378266 69378452 -212815212 + L2 LINE L2 2561 2774 -540 200 263 125 0 chr1 69378500 69378580 -212815084 + L2 LINE L2 3182 3271 -1 220 288 48 41 chr1 69378850 69378996 -212814668 - MIR3 SINE MIR -21 187 41 543 235 175 10 chr1 69379168 69379368 -212814296 + MIR SINE MIR 20 252 -10 38 96 0 0 chr1 69379537 69379652 -212814012 + AT_rich Low_complexity Low_complexity 1 115 0 243 343 71 24 chr1 69379686 69379855 -212813809 + MIR SINE MIR 14 190 -72 2417 85 0 22 chr1 69380289 69380607 -212813057 - AluY SINE Alu 0 311 1 839 173 0 0 chr1 69381166 69381299 -212812365 - FLAM_A SINE Alu 0 133 1 274 335 59 59 chr1 69381386 69381625 -212812039 - L2 LINE L2 -35 3237 2999 301 291 19 0 chr1 69381656 69381759 -212811905 - L2 LINE L2 -33 3280 3176 201 74 0 0 chr1 69381902 69381929 -212811735 + (TG)n Simple_repeat Simple_repeat 2 28 0 242 364 10 0 chr1 69381964 69382063 -212811601 - L2 LINE L2 -500 2814 2715 289 224 0 0 chr1 69382146 69382204 -212811460 + MIR SINE MIR 79 136 -126 22 0 0 0 chr1 69382293 69382315 -212811349 + AT_rich Low_complexity Low_complexity 1 22 0 2021 130 24 6 chr1 69382315 69382645 -212811019 - L1MA2 LINE L1 0 6304 5969 2101 108 58 3 chr1 69382970 69383265 -212810399 + AluSx SINE Alu 2 312 0 213 178 0 0 chr1 69383385 69383430 -212810234 + GA-rich Low_complexity Low_complexity 1 45 0 2524 77 0 3 chr1 69383693 69384005 -212809659 + AluY SINE Alu 1 311 0 246 239 0 0 chr1 69384363 69384434 -212809230 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 207 0 0 0 chr1 69384805 69384828 -212808836 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 746 150 0 0 chr1 69384834 69384947 -212808717 - FLAM_C SINE Alu -25 118 6 277 186 209 0 chr1 69386271 69386357 -212807307 + MER103 DNA DNA 4 107 -59 362 191 78 17 chr1 69387070 69387185 -212806479 + L1ME4a LINE L1 5999 6120 -1 256 276 0 0 chr1 69387366 69387424 -212806240 + L2 LINE L2 3256 3313 0 283 336 0 0 chr1 69388216 69388364 -212805300 + GA-rich Low_complexity Low_complexity 1 148 0 204 191 43 0 chr1 69389162 69389209 -212804455 + GA-rich Low_complexity Low_complexity 2 50 0 450 223 81 79 chr1 69389214 69389407 -212804257 - MIR SINE MIR -21 241 45 239 253 0 72 chr1 69390061 69390144 -212803520 - MER116 DNA Mariner -3 77 1 279 242 57 24 chr1 69390177 69390301 -212803363 + MIR SINE MIR 123 250 -12 224 114 0 0 chr1 69391294 69391329 -212802335 - L2 LINE L2 -13 3300 3266 475 290 39 78 chr1 69391398 69391653 -212802011 - L2 LINE L2 -38 3234 2990 261 240 0 0 chr1 69391659 69391755 -212801909 + (TG)n Simple_repeat Simple_repeat 2 97 0 257 329 24 18 chr1 69391790 69391957 -212801707 - L2 LINE L2 -469 2845 2678 2438 87 3 3 chr1 69392831 69393168 -212800496 + AluSx SINE Alu 1 337 0 443 200 0 9 chr1 69393350 69393455 -212800209 + CT-rich Low_complexity Low_complexity 1 104 0 356 251 147 37 chr1 69393645 69393808 -212799856 - MIR SINE MIR -7 255 75 574 233 79 38 chr1 69394110 69394319 -212799345 + MIR SINE MIR 36 262 0 430 252 184 19 chr1 69394946 69395255 -212798409 + L2 LINE L2 2713 3149 -164 2011 149 15 76 chr1 69395255 69395663 -212798001 + MLT1B LTR MaLR 1 383 -7 326 331 14 14 chr1 69395702 69395841 -212797823 + L2 LINE L2 3171 3309 -4 195 179 0 26 chr1 69396489 69396528 -212797136 - L2 LINE L2 -20 3293 3256 202 205 0 0 chr1 69396589 69396628 -212797036 + (AAGTG)n Simple_repeat Simple_repeat 4 42 0 1934 136 53 3 chr1 69396834 69397135 -212796529 + MLT1A1 LTR MaLR 4 319 -46 396 103 0 0 chr1 69397135 69397193 -212796471 + (A)n Simple_repeat Simple_repeat 1 58 0 480 308 43 24 chr1 69397428 69397636 -212796028 - MIR SINE MIR -35 227 16 575 206 75 38 chr1 69397698 69397858 -212795806 - MLT1C LTR MaLR -202 265 100 1569 191 20 26 chr1 69398068 69398409 -212795255 - MLT1C LTR MaLR 0 467 129 7440 120 10 24 chr1 69398730 69398897 -212794767 + L1MA2 LINE L1 4838 5006 -1298 1719 180 0 7 chr1 69398897 69399181 -212794483 + AluJo SINE Alu 1 282 -30 7440 120 10 24 chr1 69399181 69400510 -212793154 + L1MA2 LINE L1 5006 6304 0 204 272 79 70 chr1 69400541 69400655 -212793009 + L2 LINE L2 3156 3270 -2 532 301 193 21 chr1 69401605 69402040 -212791624 + L2 LINE L2 2804 3313 0 279 256 25 58 chr1 69402196 69402251 -212791413 - MIR SINE MIR -140 122 67 2567 127 3 0 chr1 69402251 69402612 -212791052 - THE1B LTR MaLR -2 362 1 279 256 25 58 chr1 69402612 69402677 -212790987 - MIR SINE MIR -195 67 6 192 40 0 0 chr1 69402982 69403007 -212790657 + (T)n Simple_repeat Simple_repeat 1 25 0 226 278 0 22 chr1 69403449 69403539 -212790125 - MIR3 SINE MIR -11 197 110 * 245 363 112 24 chr1 69403536 69403831 -212789833 - L2 LINE L2 -11 3261 2941 782 244 74 28 chr1 69403977 69404431 -212789233 + LTR33 LTR ERVL 6 514 -7 2120 128 0 3 chr1 69405783 69406088 -212787576 + AluSx SINE Alu 1 304 -8 259 258 237 0 chr1 69406452 69406545 -212787119 - MIR SINE MIR -82 180 66 440 255 23 123 chr1 69407293 69407595 -212786069 + L2 LINE L2 2812 3083 -230 224 270 22 67 chr1 69407616 69407705 -212785959 + L2 LINE L2 3229 3313 0 662 257 35 20 chr1 69408079 69408281 -212785383 + MIR SINE MIR 16 220 -42 201 182 23 0 chr1 69409123 69409167 -212784497 + CT-rich Low_complexity Low_complexity 2 46 0 325 236 64 18 chr1 69409779 69409889 -212783775 + MIR SINE MIR 83 197 -65 236 215 101 63 chr1 69410763 69410842 -212782822 + MLT1K LTR MaLR 138 219 -369 207 0 0 0 chr1 69410881 69410904 -212782760 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 372 222 170 15 chr1 69410974 69411109 -212782555 + MLT1K LTR MaLR 390 545 -43 303 244 40 57 chr1 69411434 69411527 -212782137 + MER113 DNA MER1_type? 5 95 -426 3625 138 77 5 chr1 69411527 69412122 -212781542 + L1PA16 LINE L1 5524 6161 -5 303 244 40 57 chr1 69412122 69412204 -212781460 + MER113 DNA MER1_type? 95 177 -344 2291 142 9 0 chr1 69412395 69412740 -212780924 - MER7A DNA MER2_type 0 346 1 48 32 0 0 chr1 69412892 69412954 -212780710 + AT_rich Low_complexity Low_complexity 1 62 0 23 54 0 0 chr1 69413037 69413074 -212780590 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr1 69413807 69413853 -212779811 + AT_rich Low_complexity Low_complexity 1 46 0 297 0 0 0 chr1 69413861 69413894 -212779770 + (CA)n Simple_repeat Simple_repeat 2 34 0 429 328 39 95 chr1 69414084 69414368 -212779296 + L2 LINE L2 3005 3272 0 224 324 38 29 chr1 69414650 69414755 -212778909 + L2 LINE L2 2905 3010 -262 253 360 126 0 chr1 69415366 69415477 -212778187 + L2 LINE L2 3128 3252 -20 194 358 25 12 chr1 69415648 69415729 -212777935 - MIR SINE MIR -177 85 4 246 95 0 0 chr1 69416691 69416733 -212776931 + (A)n Simple_repeat Simple_repeat 1 42 0 221 83 28 0 chr1 69417183 69417219 -212776445 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 198 0 0 0 chr1 69419811 69419833 -212773831 + (A)n Simple_repeat Simple_repeat 1 22 0 729 239 103 19 chr1 69420381 69420594 -212773070 + MIR SINE MIR 8 238 -24 204 266 0 62 chr1 69421943 69422007 -212771657 - MIR SINE MIR -77 185 126 206 105 26 0 chr1 69422084 69422122 -212771542 + CT-rich Low_complexity Low_complexity 2 40 0 378 0 0 0 chr1 69423118 69423160 -212770504 + (TAA)n Simple_repeat Simple_repeat 1 42 0 427 263 320 5 chr1 69423161 69423355 -212770309 - MIR SINE MIR -6 256 2 3352 149 32 14 chr1 69423766 69424392 -212769272 + L1MB3 LINE L1 5544 6180 -3 1924 146 20 32 chr1 69424487 69424830 -212768834 + MER1B DNA MER1_type 1 339 0 235 292 67 75 chr1 69425523 69425643 -212768021 + L2 LINE L2 3148 3266 -6 249 284 17 69 chr1 69426723 69426839 -212766825 - MIR3 SINE MIR -3 205 96 288 293 12 54 chr1 69426839 69427006 -212766658 - MER103 DNA DNA -4 162 3 2033 164 3 6 chr1 69428430 69428742 -212764922 - AluJo SINE Alu -1 311 1 358 285 114 13 chr1 69429080 69429238 -212764426 + MIR SINE MIR 78 251 -11 526 306 145 29 chr1 69429720 69430175 -212763489 - L1M4 LINE L1 -1540 4606 4099 2099 154 0 0 chr1 69430179 69430490 -212763174 + AluSx SINE Alu 1 311 -1 303 28 0 0 chr1 69430687 69430723 -212762941 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 296 0 11 chr1 69431247 69431335 -212762329 - L1MEc LINE L1 -4058 2338 2252 1036 36 29 0 chr1 69431380 69431519 -212762145 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 458 311 93 44 chr1 69433390 69433638 -212760026 + MIR SINE MIR 3 262 0 21 0 0 0 chr1 69433638 69433659 -212760005 + AT_rich Low_complexity Low_complexity 1 21 0 2273 98 3 13 chr1 69434201 69434507 -212759157 - AluSx SINE Alu -9 303 1 724 278 114 0 chr1 69434605 69434832 -212758832 - MIR SINE MIR -2 260 8 2340 108 0 0 chr1 69434988 69435294 -212758370 + AluY SINE Alu 1 306 -5 295 295 30 32 chr1 69435411 69435555 -212758109 - MIR SINE MIR -58 150 57 264 305 24 0 chr1 69435572 69435654 -212758010 - MIR SINE MIR 0 262 179 235 276 198 17 chr1 69435916 69436032 -212757632 - L2 LINE L2 -2 3311 3175 571 353 134 2 chr1 69436262 69436687 -212756977 - L2 LINE L2 -400 2914 2434 241 344 115 11 chr1 69436686 69436869 -212756795 - MIR SINE MIR -59 203 2 * 1583 159 3 28 chr1 69436921 69437242 -212756422 + AluJb SINE Alu 1 314 0 229 167 0 26 chr1 69437425 69437503 -212756161 - L1ME4a LINE L1 -12 6109 6034 326 288 61 30 chr1 69437843 69437975 -212755689 + MIR SINE MIR 111 246 -16 2241 90 0 0 chr1 69439413 69439712 -212753952 - AluSg SINE Alu -11 299 1 1752 160 30 9 chr1 69439761 69440093 -212753571 + MER44D DNA MER2_type 1 609 0 400 280 65 42 chr1 69441470 69441638 -212752026 + MIR SINE MIR 89 260 -2 209 222 0 0 chr1 69441716 69441761 -212751903 + L2 LINE L2 3268 3312 -1 22 0 0 0 chr1 69442081 69442103 -212751561 + AT_rich Low_complexity Low_complexity 1 22 0 214 273 18 0 chr1 69444938 69444993 -212748671 + GA-rich Low_complexity Low_complexity 2 57 0 225 0 0 0 chr1 69446694 69446719 -212746945 + (TC)n Simple_repeat Simple_repeat 2 26 0 210 71 0 0 chr1 69447750 69447778 -212745886 + (A)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr1 69448230 69448251 -212745413 + (T)n Simple_repeat Simple_repeat 1 21 0 225 214 0 0 chr1 69450102 69450144 -212743520 + A-rich Low_complexity Low_complexity 1 42 0 373 291 71 21 chr1 69451435 69451576 -212742088 + MIR SINE MIR 9 156 -106 329 268 51 83 chr1 69451849 69451893 -212741771 + L2 LINE L2 3121 3165 -107 1827 97 49 0 chr1 69451893 69452056 -212741608 - AluY SINE Alu -16 295 115 212 0 0 35 chr1 69452056 69452085 -212741579 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1827 97 49 0 chr1 69452085 69452168 -212741496 - AluY SINE Alu -196 115 37 329 268 51 83 chr1 69452168 69452280 -212741384 + L2 LINE L2 3165 3272 0 552 269 164 18 chr1 69452674 69452730 -212740934 - MIR SINE MIR -2 260 214 207 0 0 0 chr1 69452730 69452753 -212740911 + (TG)n Simple_repeat Simple_repeat 2 24 0 552 269 164 18 chr1 69452753 69452915 -212740749 - MIR SINE MIR -48 214 10 369 315 99 17 chr1 69452954 69453135 -212740529 - MIR SINE MIR -17 245 50 1199 171 100 8 chr1 69453198 69453437 -212740227 - AluJo SINE Alu -5 307 47 180 111 0 0 chr1 69454335 69454362 -212739302 + (A)n Simple_repeat Simple_repeat 1 27 0 459 52 0 0 chr1 69454787 69454845 -212738819 + (CA)n Simple_repeat Simple_repeat 2 59 0 259 357 89 6 chr1 69455396 69455553 -212738111 - L2 LINE L2 -13 3259 3090 * 369 307 94 24 chr1 69455539 69455751 -212737913 + MIR SINE MIR 36 262 0 371 279 115 8 chr1 69456072 69456194 -212737470 - MIR SINE MIR -57 151 17 623 315 54 57 chr1 69456415 69456802 -212736862 - LTR16A LTR ERVL -5 445 60 207 274 194 16 chr1 69456839 69456901 -212736763 - MIR SINE MIR -90 118 46 197 313 89 27 chr1 69458013 69458125 -212735539 - L2 LINE L2 -17 3296 3178 1457 176 14 7 chr1 69458495 69458785 -212734879 + MER58B DNA MER1_type 50 341 0 477 311 71 10 chr1 69458785 69458981 -212734683 + MIR SINE MIR 9 216 -46 732 268 70 21 chr1 69459225 69459468 -212734196 - MIR SINE MIR 0 262 8 2221 102 0 7 chr1 69460123 69460418 -212733246 - AluY SINE Alu -18 293 1 302 204 133 0 chr1 69460576 69460689 -212732975 + L1ME4a LINE L1 5799 5926 -195 531 287 0 8 chr1 69461041 69461170 -212732494 + MIR SINE MIR 21 148 -60 950 155 39 0 chr1 69461380 69461561 -212732103 - L1MB1 LINE L1 0 6168 5981 4059 250 74 28 chr1 69461563 69464374 -212729290 - L1 LINE L1 -2642 3328 398 516 313 65 55 chr1 69464787 69465187 -212728477 - L1 LINE L1 -5487 404 1 1605 297 81 29 chr1 69465371 69466000 -212727664 + Zaphod DNA AcHobo 2 663 -3368 2173 221 88 16 chr1 69466008 69466686 -212726978 + Zaphod DNA AcHobo 3292 4018 -13 6437 89 10 1 chr1 69467045 69468808 -212724856 - L1PA10 LINE L1 0 6168 4388 24 32 0 0 chr1 69468867 69468898 -212724766 + AT_rich Low_complexity Low_complexity 1 31 0 2154 108 0 0 chr1 69469073 69469352 -212724312 + AluSx SINE Alu 3 281 -31 28 88 0 18 chr1 69469468 69469490 -212724174 + AT_rich Low_complexity Low_complexity 1 22 -89 997 83 0 0 chr1 69469490 69469622 -212724042 - L1PA16 LINE L1 -9 6157 6026 28 88 0 18 chr1 69469622 69469712 -212723952 + AT_rich Low_complexity Low_complexity 22 111 0 423 222 56 0 chr1 69469851 69469959 -212723705 - MER5B DNA MER1_type -10 168 55 266 296 25 0 chr1 69469990 69470071 -212723593 + MER5B DNA MER1_type 20 102 -76 598 224 16 115 chr1 69470335 69470527 -212723137 + MER5B DNA MER1_type 1 173 -5 181 271 29 57 chr1 69471331 69471401 -212722263 - L2 LINE L2 0 3272 3205 5776 127 23 3 chr1 69472219 69473643 -212720021 - L1PA15 LINE L1 0 6165 4738 200 254 68 34 chr1 69473643 69473761 -212719903 - L3 LINE CR1 -310 1267 1146 434 158 13 0 chr1 69474414 69474490 -212719174 - MER96 DNA MER1_type? -91 84 8 466 222 86 102 chr1 69474549 69474873 -212718791 - MLT1H LTR MaLR -4 545 227 260 260 0 14 chr1 69474980 69475053 -212718611 - MLT1H LTR MaLR -406 143 72 2008 101 17 7 chr1 69475667 69475965 -212717699 + L1PA13 LINE L1 5863 6163 0 202 250 0 0 chr1 69476386 69476426 -212717238 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1731 189 0 20 chr1 69476580 69476881 -212716783 + AluJb SINE Alu 1 295 -17 2151 282 29 15 chr1 69477167 69477784 -212715880 - MLT2E LTR ERVL -2 626 1 291 322 0 0 chr1 69478299 69478386 -212715278 - MIR3 SINE MIR -21 187 101 * 484 271 66 13 chr1 69478384 69478535 -212715129 - MIR SINE MIR -89 173 15 284 331 121 6 chr1 69478968 69479134 -212714530 + L2 LINE L2 3125 3309 -4 300 356 30 0 chr1 69479223 69479324 -212714340 - MIR SINE MIR -57 151 48 346 241 75 60 chr1 69480324 69480457 -212713207 + MIR SINE MIR 20 154 -108 310 228 54 43 chr1 69480459 69480551 -212713113 - MIR SINE MIR -55 153 61 208 328 0 16 chr1 69481117 69481181 -212712483 - L3 LINE CR1 -133 1444 1382 318 315 79 0 chr1 69481189 69481316 -212712348 + L3 LINE CR1 1379 1515 -62 338 231 31 23 chr1 69481351 69481464 -212712200 + MIR SINE MIR 102 214 -48 1700 188 21 3 chr1 69481491 69481779 -212711885 - AluJb SINE Alu -19 293 1 319 335 62 31 chr1 69482555 69482753 -212710911 - MIR SINE MIR -51 211 4 245 271 71 0 chr1 69482933 69483003 -212710661 + MER5C DNA MER1_type 5 79 -245 196 361 36 18 chr1 69483666 69483832 -212709832 + L3 LINE CR1 659 827 -750 301 399 86 11 chr1 69483890 69484168 -212709496 + L2 LINE L2 2955 3253 -19 754 252 58 41 chr1 69484186 69484428 -212709236 + MIR SINE MIR 16 261 -1 320 283 167 25 chr1 69484442 69484562 -212709102 + L3 LINE CR1 1301 1437 -140 2296 86 7 0 chr1 69484584 69484875 -212708789 + AluSc SINE Alu 1 293 -16 2575 169 21 25 chr1 69484884 69485380 -212708284 + L1MB5 LINE L1 4757 5245 -935 2190 75 0 10 chr1 69485380 69485674 -212707990 + AluY SINE Alu 1 291 -20 2575 169 21 25 chr1 69485674 69486098 -212707566 + L1MB5 LINE L1 5245 5669 -511 1916 160 36 21 chr1 69486104 69486460 -212707204 + L1MB5 LINE L1 5773 6137 -37 5071 107 9 15 chr1 69486460 69487247 -212706417 + L1MA2 LINE L1 5522 6303 -1 1916 160 36 21 chr1 69487247 69487278 -212706386 + L1MB5 LINE L1 6137 6166 -8 376 325 17 17 chr1 69487283 69487403 -212706261 + L3 LINE CR1 1425 1544 -33 320 249 254 5 chr1 69487418 69487607 -212706057 + MIR SINE MIR 13 248 -14 371 292 34 96 chr1 69488407 69488634 -212705030 + MIR SINE MIR 4 221 -41 1820 182 14 0 chr1 69488637 69488934 -212704730 - AluSx SINE Alu -7 305 5 581 301 87 9 chr1 69488949 69489178 -212704486 - MIR SINE MIR -14 248 2 201 133 0 0 chr1 69489518 69489548 -212704116 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 197 296 197 8 chr1 69490389 69490521 -212703143 + MIR SINE MIR 100 256 -6 708 323 81 43 chr1 69490637 69491129 -212702535 + L2 LINE L2 2273 2783 -531 276 299 11 11 chr1 69491127 69491214 -212702450 + L2 LINE L2 3225 3311 -2 * 265 75 0 0 chr1 69491241 69491281 -212702383 + MADE1 DNA Mariner 39 78 -2 2046 255 84 25 chr1 69491345 69492946 -212700718 - L1ME LINE L1 -4370 1710 20 265 320 55 61 chr1 69493967 69494148 -212699516 + MIR SINE MIR 29 208 -54 357 207 132 83 chr1 69494153 69494274 -212699390 + L2 LINE L2 3187 3313 0 21 36 0 0 chr1 69494513 69494541 -212699123 + AT_rich Low_complexity Low_complexity 1 28 0 246 284 0 112 chr1 69494809 69494943 -212698721 + MIR SINE MIR 58 176 -86 * 266 322 22 0 chr1 69494942 69495032 -212698632 - L2 LINE L2 -2 3311 3220 240 235 24 59 chr1 69495031 69495116 -212698548 + MIR SINE MIR 170 251 -11 * 2474 72 0 0 chr1 69495139 69495444 -212698220 + AluY SINE Alu 1 305 -6 414 69 0 0 chr1 69496904 69496962 -212696702 + (TG)n Simple_repeat Simple_repeat 2 59 0 332 322 51 40 chr1 69497204 69497381 -212696283 + MER5A DNA MER1_type 11 189 0 202 226 345 12 chr1 69497490 69497574 -212696090 - MER5A DNA MER1_type -38 151 40 309 256 103 8 chr1 69498997 69499114 -212694550 - MER94 DNA DNA -4 130 3 928 152 136 0 chr1 69500593 69500777 -212692887 - MER3 DNA MER1_type 0 209 1 666 277 31 5 chr1 69500908 69501132 -212692532 + LTR16B LTR ERVL 235 464 0 294 246 114 35 chr1 69501800 69501914 -212691750 - L2 LINE L2 0 3272 3150 347 265 149 44 chr1 69502444 69502693 -212690971 - MLT1J LTR MaLR -23 488 214 384 274 127 0 chr1 69503617 69503774 -212689890 - MIR SINE MIR -31 231 55 390 264 48 43 chr1 69503851 69504017 -212689647 - MIR SINE MIR -54 208 45 281 278 37 9 chr1 69504131 69504239 -212689425 - MER81 DNA DNA 0 114 4 731 238 39 0 chr1 69504520 69504701 -212688963 - MER5A DNA MER1_type 0 189 2 297 130 56 0 chr1 69504730 69504784 -212688880 + Charlie7 DNA MER1_type 40 96 -2516 8353 212 78 7 chr1 69504829 69506590 -212687074 + L1M2 LINE L1 3 1888 -4961 3957 152 22 31 chr1 69506578 69507657 -212686007 + L1M2 LINE L1 2144 3210 -3638 * 2103 164 0 29 chr1 69507657 69508004 -212685660 + MER1B DNA MER1_type 1 337 0 7279 44 2 2 chr1 69508023 69509707 -212683957 + L1PA5 LINE L1 4474 6146 -8 5392 115 60 11 chr1 69509714 69510670 -212682994 + L1MA4A LINE L1 5297 6298 -5 22 70 0 0 chr1 69510696 69510739 -212682925 + AT_rich Low_complexity Low_complexity 1 43 0 677 217 49 54 chr1 69510938 69511122 -212682542 + MER5A DNA MER1_type 1 183 -6 348 222 24 32 chr1 69511384 69511510 -212682154 - MER53 DNA DNA -24 165 41 498 341 141 14 chr1 69511523 69511813 -212681851 + L2 LINE L2 2943 3269 -3 244 242 204 21 chr1 69511950 69512110 -212681554 + MIR SINE MIR 4 197 -58 535 237 172 30 chr1 69512287 69512485 -212681179 - MIR SINE MIR -23 239 14 623 257 53 20 chr1 69512864 69513109 -212680555 + MLT1L LTR MaLR 19 271 -344 325 354 82 6 chr1 69513427 69513585 -212680079 + L2 LINE L2 3103 3272 0 227 354 12 0 chr1 69513768 69513850 -212679814 + L2 LINE L2 3231 3313 0 205 202 56 41 chr1 69514017 69514135 -212679529 - MIR SINE MIR -7 201 85 2480 83 0 0 chr1 69514491 69514793 -212678871 + AluSg SINE Alu 1 302 -8 430 263 113 8 chr1 69515380 69515513 -212678151 + MIR SINE MIR 29 175 -87 654 226 41 36 chr1 69516683 69516878 -212676786 - LTR16C LTR ERVL 0 491 296 305 305 72 95 chr1 69517100 69517162 -212676502 + L2 LINE L2 2804 2866 -406 2506 113 11 8 chr1 69517162 69517516 -212676148 + THE1A LTR MaLR 1 355 0 305 305 72 95 chr1 69517516 69517928 -212675736 + L2 LINE L2 2866 3267 -5 188 277 0 0 chr1 69518146 69518193 -212675471 - L2 LINE L2 -4 3309 3263 406 316 138 28 chr1 69518419 69518666 -212674998 + L2 LINE L2 2992 3265 -7 237 291 0 38 chr1 69520530 69520609 -212673055 - L2 LINE L2 -55 3258 3183 438 285 35 66 chr1 69521145 69521291 -212672373 - L2 LINE L2 -875 2439 2301 2086 135 6 13 chr1 69521291 69521602 -212672062 - AluSx SINE Alu -3 309 1 438 285 35 66 chr1 69521602 69521683 -212671981 - L2 LINE L2 -1013 2301 2219 244 293 0 13 chr1 69521790 69521865 -212671799 + L2 LINE L2 3225 3298 -15 206 336 101 0 chr1 69522333 69522482 -212671182 + MIR SINE MIR 28 191 -71 389 282 76 36 chr1 69522808 69523116 -212670548 + MLT1K LTR MaLR 162 568 -20 1330 271 75 56 chr1 69523123 69523694 -212669970 - MLT1G LTR MaLR 0 590 9 257 180 0 0 chr1 69523860 69523910 -212669754 - U5 snRNA snRNA -66 50 1 207 320 13 13 chr1 69523979 69524054 -212669610 - MIR3 SINE MIR -2 206 132 * 213 316 26 13 chr1 69524052 69524128 -212669536 - L2 LINE L2 -4 3268 3192 1744 170 42 0 chr1 69524156 69524445 -212669219 + AluJo SINE Alu 1 301 -11 207 0 0 0 chr1 69524451 69524474 -212669190 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 204 40 0 0 chr1 69524535 69524560 -212669104 + (TA)n Simple_repeat Simple_repeat 1 25 0 286 224 0 82 chr1 69524646 69524731 -212668933 + MER103 DNA DNA 14 91 -75 482 271 29 29 chr1 69525916 69526056 -212667608 - MIR SINE MIR -108 154 15 627 171 39 16 chr1 69526138 69526267 -212667397 + MIR SINE MIR 65 196 -66 1825 219 12 28 chr1 69526625 69527091 -212666573 + MER89 LTR ERV1 1 557 -2 884 254 46 68 chr1 69527095 69527304 -212666360 + MER89-int LTR ERV1 2 204 -6597 2054 110 7 0 chr1 69527304 69527622 -212666042 - AluSq SINE Alu 0 320 1 884 254 46 68 chr1 69527622 69527718 -212665946 + MER89-int LTR ERV1 204 301 -6500 978 240 61 8 chr1 69527800 69528046 -212665618 + MER89-int LTR ERV1 460 718 -6083 6552 229 31 41 chr1 69528267 69529938 -212663726 + MER89-int LTR ERV1 890 2543 -4258 192 40 0 0 chr1 69529957 69529982 -212663682 + (GA)n Simple_repeat Simple_repeat 2 26 0 197 0 0 67 chr1 69530075 69530105 -212663559 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 257 299 0 35 chr1 69530119 69530206 -212663458 + MER89-int LTR ERV1 3426 3509 -4748 816 265 108 0 chr1 69530294 69530498 -212663166 + MER89-int LTR ERV1 2547 2772 -4029 216 0 0 0 chr1 69530498 69530522 -212663142 + (TA)n Simple_repeat Simple_repeat 2 25 0 7407 51 13 2 chr1 69530522 69531788 -212661876 - L1PA5 LINE L1 -7 6147 4873 28588 49 5 1 chr1 69531888 69535776 -212657888 - L1P2 LINE L1 -412 5742 1844 42887 59 4 1 chr1 69535781 69541450 -212652214 + L1P2 LINE L1 7 5686 -468 5482 58 0 0 chr1 69541550 69542191 -212651473 + L1PA4 LINE L1 5513 6153 -2 13487 102 2 3 chr1 69542197 69544056 -212649608 - L1P2 LINE L1 -4288 1858 1 1139 201 34 8 chr1 69544076 69544315 -212649349 + MER89-int LTR ERV1 2786 3030 -3771 520 219 9 0 chr1 69544335 69544440 -212649224 + MER89-int LTR ERV1 5757 5862 -939 3227 257 33 25 chr1 69544511 69545394 -212648270 + MER89-int LTR ERV1 3053 3942 -2859 9741 233 49 23 chr1 69545406 69547747 -212645917 + MER89-int LTR ERV1 4400 6801 0 1576 211 16 89 chr1 69547763 69547957 -212645707 + MER89 LTR ERV1 23 230 -329 2934 79 8 16 chr1 69547957 69548324 -212645340 - THE1B LTR MaLR 0 364 1 1576 211 16 89 chr1 69548324 69548604 -212645060 + MER89 LTR ERV1 230 559 0 330 172 131 61 chr1 69549209 69549308 -212644356 - MIR SINE MIR -142 120 15 850 206 137 39 chr1 69549465 69549606 -212644058 - MER58A DNA MER1_type -2196 224 56 2111 119 3 10 chr1 69549606 69549928 -212643736 + AluSg SINE Alu 1 310 0 850 206 137 39 chr1 69549928 69549990 -212643674 - MER58A DNA MER1_type -2364 56 1 342 317 172 5 chr1 69550056 69550241 -212643423 - MIR SINE MIR -17 245 14 189 0 0 0 chr1 69551017 69551038 -212642626 + (T)n Simple_repeat Simple_repeat 1 21 0 345 208 52 31 chr1 69551154 69551250 -212642414 - LTR67 LTR ERVL -22 535 438 255 215 0 0 chr1 69551371 69551436 -212642228 + G-rich Low_complexity Low_complexity 2 66 0 257 273 34 23 chr1 69552032 69552120 -212641544 + L2 LINE L2 3179 3267 -5 453 36 0 0 chr1 69552873 69552928 -212640736 + (TCCA)n Simple_repeat Simple_repeat 1 55 0 475 279 48 78 chr1 69552946 69553215 -212640449 - L2 LINE L2 0 3313 3053 455 299 54 6 chr1 69553262 69553429 -212640235 - MIR SINE MIR -86 176 2 305 267 89 10 chr1 69554014 69554115 -212639549 + L2 LINE L2 3164 3272 0 575 122 30 0 chr1 69554320 69554451 -212639213 + (TCTA)n Simple_repeat Simple_repeat 1 135 0 297 0 0 0 chr1 69554884 69554917 -212638747 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 263 228 177 13 chr1 69555116 69555195 -212638469 - LTR33A LTR ERVL -19 504 413 446 303 12 125 chr1 69555899 69556299 -212637365 - L2 LINE L2 -4 3268 2914 547 265 45 40 chr1 69556817 69557017 -212636647 - MIR SINE MIR -48 214 14 327 318 98 23 chr1 69557217 69557390 -212636274 - MIR SINE MIR -57 205 20 194 373 0 0 chr1 69557491 69557558 -212636106 - L2 LINE L2 -2 3311 3245 214 225 0 0 chr1 69557645 69557685 -212635979 - MIR3 SINE MIR -16 192 153 352 286 46 35 chr1 69557709 69557915 -212635749 + L1P LINE L1 3710 3918 -2228 510 165 8 126 chr1 69557998 69558125 -212635539 + MER7A DNA MER2_type 2 111 -235 22 0 0 0 chr1 69558127 69558149 -212635515 + AT_rich Low_complexity Low_complexity 1 22 0 802 197 23 0 chr1 69558149 69558281 -212635383 - AluJo SINE Alu -176 136 2 1082 173 101 0 chr1 69558282 69558490 -212635174 + MER7A DNA MER2_type 95 323 -14 614 298 98 41 chr1 69558563 69559375 -212634289 + L1MC4a LINE L1 4487 5345 -801 990 233 273 10 chr1 69559381 69559781 -212633883 + L1MC4a LINE L1 5407 5911 -1897 234 0 0 0 chr1 69559861 69559887 -212633777 + (T)n Simple_repeat Simple_repeat 1 26 0 246 105 0 0 chr1 69560357 69560395 -212633269 + (T)n Simple_repeat Simple_repeat 1 38 0 209 321 24 12 chr1 69560683 69560767 -212632897 + MIR SINE MIR 178 262 0 571 296 10 39 chr1 69562160 69562363 -212631301 - MIR SINE MIR -57 205 9 362 245 221 6 chr1 69562890 69563053 -212630611 + MIR SINE MIR 65 262 0 23 22 0 44 chr1 69564457 69564477 -212629187 + AT_rich Low_complexity Low_complexity 1 20 -23 2129 107 0 30 chr1 69564477 69564776 -212628888 - AluSc SINE Alu -19 290 1 23 22 0 44 chr1 69564776 69564800 -212628864 + AT_rich Low_complexity Low_complexity 20 43 0 288 358 150 10 chr1 69565028 69565221 -212628443 + MIR SINE MIR 13 232 -30 190 364 52 69 chr1 69566454 69566627 -212627037 - L2 LINE L2 -17 3255 3086 510 134 161 18 chr1 69566668 69566780 -212626884 + MER63 DNA MER1_type 5 758 -78 447 19 0 0 chr1 69566836 69566888 -212626776 + (TG)n Simple_repeat Simple_repeat 2 53 0 344 331 16 0 chr1 69566888 69567015 -212626649 - L2 LINE L2 -220 3052 2924 1949 181 138 16 chr1 69567363 69567811 -212625853 + MLT1D LTR MaLR 1 503 -2 559 274 107 5 chr1 69567829 69568026 -212625638 + MIR SINE MIR 2 218 -44 222 37 0 0 chr1 69568415 69568442 -212625222 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr1 69569267 69569290 -212624374 + AT_rich Low_complexity Low_complexity 1 23 0 598 191 0 28 chr1 69569298 69569439 -212624225 - L1MA7 LINE L1 -4 6287 6151 183 329 37 37 chr1 69569542 69569624 -212624040 + L2 LINE L2 3185 3266 -6 806 220 21 17 chr1 69569740 69569981 -212623683 - Charlie2 DNA MER1_type -491 2371 2130 254 327 82 31 chr1 69570268 69570427 -212623237 - MER117 DNA MER1_type -20 177 11 2233 119 3 0 chr1 69570597 69570891 -212622773 + AluSp SINE Alu 1 295 -18 903 248 45 7 chr1 69571219 69571505 -212622159 - HAL1b LINE L1 -471 877 581 3473 35 0 12 chr1 69571625 69572055 -212621609 - L1PA5 LINE L1 -1 6153 5729 2134 31 0 0 chr1 69572055 69572311 -212621353 + L1PA5 LINE L1 5467 5722 -432 187 386 96 34 chr1 69573052 69573376 -212620288 - L2 LINE L2 -123 3149 2806 297 310 137 20 chr1 69573669 69573866 -212619798 + MIR SINE MIR 31 250 -12 422 275 62 45 chr1 69574313 69574491 -212619173 - MIR SINE MIR -5 257 77 825 262 101 51 chr1 69574523 69574990 -212618674 - MLT1H LTR MaLR 0 549 18 318 324 55 9 chr1 69575064 69575197 -212618467 - MIR SINE MIR -63 145 11 201 308 0 0 chr1 69575234 69575286 -212618378 - L3 LINE CR1 -2 1575 1524 607 346 113 38 chr1 69575554 69576059 -212617605 - L3 LINE CR1 -30 1547 1005 6177 40 0 1 chr1 69576069 69576812 -212616852 - L1PA5 LINE L1 -1 6153 5412 1387 43 0 0 chr1 69576812 69576999 -212616665 + L1PA5 LINE L1 5217 5403 -743 335 348 49 87 chr1 69577217 69577504 -212616160 - L2 LINE L2 -9 3263 2988 381 313 204 0 chr1 69577556 69577732 -212615932 + MIR SINE MIR 20 231 -31 22 56 0 0 chr1 69578300 69578336 -212615328 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 69578562 69578594 -212615070 + AT_rich Low_complexity Low_complexity 1 32 0 3839 247 76 39 chr1 69578612 69578731 -212614933 - L1MC4 LINE L1 -40 8002 7889 360 0 0 0 chr1 69578731 69578771 -212614893 + (CA)n Simple_repeat Simple_repeat 1 40 0 3839 247 76 39 chr1 69578771 69579569 -212614095 - L1MC4 LINE L1 -153 7889 7122 1181 19 31 0 chr1 69579569 69579728 -212613936 + (TCTA)n Simple_repeat Simple_repeat 1 164 0 3839 247 76 39 chr1 69579728 69581184 -212612480 - L1MC4 LINE L1 -920 7122 5517 219 182 23 0 chr1 69583331 69583375 -212610289 - L2 LINE L2 0 3313 3269 319 85 0 0 chr1 69584190 69584237 -212609427 - MER4C LTR ERV1 -2 463 417 * 4279 144 26 26 chr1 69584234 69585012 -212608652 - MER4D LTR ERV1 -125 778 1 22 0 0 0 chr1 69585641 69585663 -212608001 + AT_rich Low_complexity Low_complexity 1 22 0 194 136 23 0 chr1 69585898 69585942 -212607722 + (CA)n Simple_repeat Simple_repeat 2 46 0 1980 158 7 7 chr1 69586079 69586382 -212607282 + AluJb SINE Alu 6 308 -4 25 31 0 0 chr1 69586906 69586938 -212606726 + AT_rich Low_complexity Low_complexity 1 32 0 2009 171 19 38 chr1 69587097 69587524 -212606140 - MSTB1 LTR MaLR -13 419 1 567 328 81 21 chr1 69588876 69589160 -212604504 + L3 LINE CR1 966 1266 -311 246 259 19 0 chr1 69589176 69589230 -212604434 + L2 LINE L2 3188 3242 -30 355 332 168 0 chr1 69589236 69589438 -212604226 - MIR SINE MIR 0 262 27 268 312 154 7 chr1 69589563 69589693 -212603971 - MIR SINE MIR -69 139 2 352 231 34 51 chr1 69589999 69590116 -212603548 - MIR SINE MIR -72 190 76 6320 168 23 1 chr1 69590119 69592140 -212601524 + L1PA13 LINE L1 4131 6144 -19 1912 148 154 8 chr1 69592454 69592825 -212600839 - MSTA LTR MaLR 0 428 4 8908 145 14 40 chr1 69592828 69594448 -212599216 - MSTA-int LTR MaLR 0 1580 3 1347 138 115 77 chr1 69594450 69594638 -212599026 - THE1C LTR MaLR 0 375 195 180 0 0 0 chr1 69594638 69594658 -212599006 + (GA)n Simple_repeat Simple_repeat 2 21 0 1347 138 115 77 chr1 69594658 69594818 -212598846 - THE1C LTR MaLR -180 195 14 262 278 0 0 chr1 69594906 69594968 -212598696 - MIR SINE MIR -72 136 74 347 231 87 29 chr1 69595570 69595674 -212597990 + L2 LINE L2 2224 2333 -981 902 271 18 58 chr1 69595680 69596137 -212597527 + L2 LINE L2 2725 3164 -149 331 352 8 0 chr1 69596447 69596575 -212597089 - L1MC4a LINE L1 -1799 6009 5881 656 264 69 0 chr1 69596604 69596835 -212596829 - L1ME3 LINE L1 -29 6133 5887 574 250 113 72 chr1 69597015 69597214 -212596450 - L1ME3 LINE L1 -2144 5664 5446 1790 52 145 26 chr1 69597214 69597483 -212596181 - AluY SINE Alu 0 301 1 574 250 113 72 chr1 69597483 69597603 -212596061 - L1ME3 LINE L1 -2362 5446 5332 317 323 76 59 chr1 69597612 69598136 -212595528 - L1ME3 LINE L1 -824 5322 4790 34 55 0 0 chr1 69598599 69598654 -212595010 + AT_rich Low_complexity Low_complexity 1 55 0 5370 128 25 3 chr1 69598658 69599524 -212594140 + L1MC1 LINE L1 5447 6331 -2 251 289 82 10 chr1 69599525 69599622 -212594042 - L2 LINE L2 -9 3263 3160 291 253 167 43 chr1 69599684 69599846 -212593818 + MIR SINE MIR 7 188 -74 499 191 0 45 chr1 69600644 69600754 -212592910 + MIR SINE MIR 97 201 -61 2341 143 28 79 chr1 69600756 69601349 -212592315 - L1M2 LINE L1 -563 5749 5188 14602 165 118 26 chr1 69601357 69606035 -212587629 - L1MA3 LINE L1 0 7724 2171 2248 55 3 58 chr1 69606035 69606345 -212587319 - AluY SINE Alu -18 293 1 14602 165 118 26 chr1 69606345 69608723 -212584941 - L1MA3 LINE L1 -5553 2171 14 245 288 0 0 chr1 69608722 69608795 -212584869 - L1M2 LINE L1 -942 5204 5132 * 2165 207 31 6 chr1 69608797 69609284 -212584380 + L1M2 LINE L1 4621 5119 -1027 334 240 90 30 chr1 69609296 69609396 -212584268 + L2 LINE L2 3208 3313 0 343 238 271 8 chr1 69609907 69610029 -212583635 + MIR SINE MIR 61 214 -48 413 284 64 50 chr1 69610658 69610876 -212582788 + MIR SINE MIR 28 248 -14 688 360 84 12 chr1 69612408 69613072 -212580592 - L2 LINE L2 -218 3054 2342 305 284 21 0 chr1 69613112 69613207 -212580457 - L2 LINE L2 -1293 2021 1925 514 248 148 19 chr1 69613370 69613580 -212580084 - MIR SINE MIR -13 249 13 2223 90 14 0 chr1 69613637 69613926 -212579738 + AluY SINE Alu 4 296 -15 3524 115 43 40 chr1 69613927 69614260 -212579404 + MER4B LTR ERV1 1 338 -272 480 67 27 0 chr1 69614260 69614335 -212579329 + L1PB1 LINE L1 6070 6146 -5 3524 115 43 40 chr1 69614335 69614609 -212579055 + MER4B LTR ERV1 338 610 0 1184 110 153 0 chr1 69614611 69614839 -212578825 + MER4B-int LTR ERV1 1 263 -6335 242 253 36 48 chr1 69614867 69614950 -212578714 + LTR33 LTR ERVL 78 159 -362 242 214 71 24 chr1 69615040 69615124 -212578540 + LTR33A LTR ERVL 303 390 -133 369 319 85 21 chr1 69615356 69615544 -212578120 - MIR SINE MIR -50 212 13 189 339 32 0 chr1 69616050 69616112 -212577552 - MIR SINE MIR -109 99 36 208 361 134 26 chr1 69616780 69616974 -212576690 + L2 LINE L2 2845 3059 -213 249 267 70 12 chr1 69617943 69618029 -212575635 + MIR SINE MIR 96 186 -76 309 197 0 0 chr1 69618039 69618110 -212575554 + (TTCA)n Simple_repeat Simple_repeat 4 74 0 261 257 117 70 chr1 69618119 69618290 -212575374 - L2 LINE L2 0 3313 3135 469 263 5 124 chr1 69619390 69619473 -212574191 + MIR SINE MIR 14 105 -157 629 155 0 0 chr1 69619473 69619570 -212574094 - L1MD2 LINE L1 -7 6352 6256 469 263 5 124 chr1 69619570 69619703 -212573961 + MIR SINE MIR 105 204 -58 403 154 0 15 chr1 69619785 69619850 -212573814 + THE1C LTR MaLR 1 64 -311 2207 130 6 0 chr1 69619885 69620207 -212573457 + THE1C LTR MaLR 52 375 0 13241 164 67 34 chr1 69620365 69620868 -212572796 - Tigger1 DNA MER2_type -2 2416 1931 1579 129 27 0 chr1 69620868 69621092 -212572572 + MER30 DNA MER1_type 1 230 0 13241 164 67 34 chr1 69621092 69622238 -212571426 - Tigger1 DNA MER2_type -487 1931 665 1644 164 0 31 chr1 69622238 69622530 -212571134 + AluJo SINE Alu 30 312 0 13241 164 67 34 chr1 69622530 69623217 -212570447 - Tigger1 DNA MER2_type -1753 665 2 216 329 0 0 chr1 69623453 69623523 -212570141 + CT-rich Low_complexity Low_complexity 3 72 0 327 265 34 48 chr1 69623524 69623671 -212569993 - L1ME LINE L1 -393 5728 5584 366 325 41 47 chr1 69623703 69623881 -212569783 - MER5B DNA MER1_type -2 187 1 294 316 26 26 chr1 69623886 69624003 -212569661 + L3 LINE CR1 666 782 -795 240 285 133 26 chr1 69624024 69624175 -212569489 - MIR SINE MIR -10 252 86 292 281 9 79 chr1 69624363 69624477 -212569187 + MER5A DNA MER1_type 1 106 -83 996 129 42 47 chr1 69624488 69624673 -212568991 - L1P4 LINE L1 -390 5776 5591 10476 135 9 8 chr1 69624673 69627105 -212566559 - L1PA11 LINE L1 0 6174 3746 199 269 39 0 chr1 69627117 69627169 -212566495 + MER5A DNA MER1_type 136 189 0 382 248 159 21 chr1 69627296 69627441 -212566223 + L3 LINE CR1 1084 1248 -329 4637 102 24 23 chr1 69628007 69628079 -212565585 + L1MA2 LINE L1 5607 5677 -627 2886 107 3 0 chr1 69628079 69628442 -212565222 - THE1B LTR MaLR 0 364 1 11412 98 50 1 chr1 69628442 69629948 -212563716 - THE1B-int LTR MaLR 0 1580 1 2597 124 22 0 chr1 69629948 69630304 -212563360 - THE1B LTR MaLR 0 364 1 4637 102 24 23 chr1 69630304 69630925 -212562739 + L1MA2 LINE L1 5676 6303 -1 22 0 0 0 chr1 69630926 69630948 -212562716 + AT_rich Low_complexity Low_complexity 1 22 0 253 248 106 26 chr1 69631295 69631408 -212562256 - MIR SINE MIR -78 184 63 378 358 79 23 chr1 69631874 69632089 -212561575 - MIR SINE MIR -26 236 10 290 298 195 5 chr1 69632306 69632511 -212561153 + MIR SINE MIR 19 262 0 491 358 49 9 chr1 69633482 69633708 -212559956 + MIR SINE MIR 22 256 -6 378 253 174 17 chr1 69634384 69634562 -212559102 + L2 LINE L2 2172 2377 -937 633 200 7 7 chr1 69634692 69634827 -212558837 + MIR SINE MIR 102 236 -26 218 318 184 25 chr1 69634999 69635200 -212558464 + L2 LINE L2 2640 2872 -442 255 275 43 0 chr1 69635571 69635640 -212558024 + L2 LINE L2 3200 3271 -1 279 330 34 0 chr1 69635668 69635756 -212557908 - MIR3 SINE MIR -44 164 74 649 61 20 0 chr1 69636145 69636244 -212557420 + (TG)n Simple_repeat Simple_repeat 2 102 0 267 182 0 18 chr1 69636525 69636580 -212557084 - MIR SINE MIR -93 115 62 201 305 47 39 chr1 69637141 69637269 -212556395 + L3 LINE CR1 1337 1465 -112 292 320 64 16 chr1 69637714 69637839 -212555825 + L2 LINE L2 3140 3270 -2 237 324 0 14 chr1 69638088 69638159 -212555505 + L2 LINE L2 3185 3254 -18 188 338 0 29 chr1 69638165 69638233 -212555431 - L2 LINE L2 -7 3265 3200 624 259 60 0 chr1 69638735 69638901 -212554763 - LTR33 LTR ERVL -336 185 10 280 360 56 0 chr1 69639446 69639571 -212554093 + L2 LINE L2 3139 3270 -2 291 337 126 23 chr1 69640015 69640190 -212553474 + L2 LINE L2 3078 3270 -2 219 313 24 12 chr1 69640430 69640513 -212553151 + L2 LINE L2 3225 3308 -5 349 295 80 9 chr1 69640644 69640756 -212552908 - MIR3 SINE MIR -53 155 36 1844 164 0 25 chr1 69640935 69641252 -212552412 + AluSx SINE Alu 1 309 -3 315 285 200 15 chr1 69641925 69642055 -212551609 - MIR SINE MIR -56 206 53 876 264 84 47 chr1 69642089 69642498 -212551166 - MLT1J2 LTR MaLR 0 450 26 1846 181 69 23 chr1 69642997 69643346 -212550318 - MLT1A1 LTR MaLR 0 365 1 211 267 13 27 chr1 69644012 69644087 -212549577 + MIR SINE MIR 172 245 -17 332 216 72 45 chr1 69644569 69644680 -212548984 + L2 LINE L2 3159 3272 0 579 285 6 13 chr1 69644750 69644908 -212548756 + MER5B DNA MER1_type 1 157 -21 362 309 78 37 chr1 69644979 69645196 -212548468 + L2 LINE L2 2839 3064 -208 290 265 8 76 chr1 69645592 69645724 -212547940 - MIR SINE MIR -112 150 28 521 276 67 91 chr1 69645748 69645958 -212547706 + L2 LINE L2 3068 3272 0 191 190 43 0 chr1 69646443 69646559 -212547105 + (CAAA)n Simple_repeat Simple_repeat 2 122 0 1024 267 58 34 chr1 69648643 69649071 -212544593 + MLT1J2 LTR MaLR 1 446 0 276 290 65 19 chr1 69649609 69649716 -212543948 + MLT1J LTR MaLR 323 434 -77 1362 100 0 38 chr1 69649806 69650047 -212543617 + AluY SINE Alu 109 311 0 196 364 0 0 chr1 69650593 69650670 -212542994 + L2 LINE L2 3173 3249 -23 942 127 6 54 chr1 69651567 69651733 -212541931 - L1PA8 LINE L1 0 6172 6015 296 261 169 21 chr1 69654027 69654169 -212539495 + MIR SINE MIR 81 243 -19 332 322 48 48 chr1 69654185 69654331 -212539333 + MIR SINE MIR 6 151 -111 292 344 44 0 chr1 69654652 69654812 -212538852 + L2 LINE L2 2640 2806 -508 2306 94 3 7 chr1 69654989 69655297 -212538367 - AluSg SINE Alu -3 307 1 2332 106 3 0 chr1 69655792 69656093 -212537571 + AluSx SINE Alu 3 304 -8 23 33 0 0 chr1 69657544 69657574 -212536090 + AT_rich Low_complexity Low_complexity 1 30 0 376 238 8 33 chr1 69657621 69657743 -212535921 + CT-rich Low_complexity Low_complexity 2 120 0 2247 160 23 16 chr1 69658062 69658449 -212535215 + MLT1B LTR MaLR 1 390 0 490 199 92 31 chr1 69658530 69658726 -212534938 + L1ME4a LINE L1 5910 6117 -4 182 337 120 33 chr1 69659669 69659761 -212533903 - MIR SINE MIR -92 116 17 529 279 45 17 chr1 69659770 69659949 -212533715 + MIR SINE MIR 65 248 -14 194 214 0 24 chr1 69660297 69660339 -212533325 - MIR SINE MIR -71 137 97 580 344 22 4 chr1 69660630 69660860 -212532804 - MLT1K LTR MaLR -275 313 80 644 290 131 14 chr1 69660983 69661273 -212532391 + LTR16C LTR ERVL 166 489 -2 265 61 0 0 chr1 69661562 69661595 -212532069 - MLT1I LTR MaLR -279 130 98 2322 187 88 4 chr1 69661823 69662289 -212531375 + MLT1D LTR MaLR 1 505 0 366 340 93 0 chr1 69662293 69662443 -212531221 - MIR SINE MIR -52 210 47 2097 177 32 11 chr1 69662695 69663073 -212530591 + MLT1B LTR MaLR 1 386 -4 319 369 12 12 chr1 69663629 69663789 -212529875 - MLT1J2 LTR MaLR -2 448 289 294 342 42 31 chr1 69664139 69664332 -212529332 + MLT1J2 LTR MaLR 254 448 -2 242 292 52 42 chr1 69664709 69664805 -212528859 + L2 LINE L2 3176 3272 0 410 274 89 16 chr1 69665458 69665582 -212528082 + MIR SINE MIR 4 136 -126 207 0 0 0 chr1 69665612 69665635 -212528029 + (TA)n Simple_repeat Simple_repeat 2 24 0 342 309 41 27 chr1 69665706 69665939 -212527725 - L1ME3 LINE L1 -235 5929 5695 2715 205 103 70 chr1 69666096 69666665 -212526999 - L1MC3 LINE L1 -7 7778 7229 345 258 11 0 chr1 69666665 69666754 -212526910 - MLT1F1 LTR MaLR -443 124 35 2715 205 103 70 chr1 69666754 69667073 -212526591 - L1MC3 LINE L1 -556 7229 6922 1972 160 108 0 chr1 69667073 69667460 -212526204 + MSTB1 LTR MaLR 4 432 0 2715 205 103 70 chr1 69667460 69667952 -212525712 - L1MC3 LINE L1 -863 6922 6448 189 0 0 0 chr1 69667952 69667973 -212525691 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2715 205 103 70 chr1 69667973 69668554 -212525110 - L1MC3 LINE L1 -1337 6448 5669 379 307 53 102 chr1 69668554 69669066 -212524598 - L1M4 LINE L1 -2417 3729 3243 42415 36 22 1 chr1 69669096 69675121 -212518543 - L1PA2 LINE L1 0 6155 2 369 279 62 11 chr1 69675155 69675431 -212518233 - L1M4 LINE L1 -3084 3062 2773 556 298 145 27 chr1 69675543 69675956 -212517708 - L1M4 LINE L1 -3531 2615 2154 211 282 0 24 chr1 69676017 69676102 -212517562 + T-rich Low_complexity Low_complexity 5 87 0 334 366 92 46 chr1 69676122 69676559 -212517105 - HAL1 LINE L1 -880 1627 1171 26 30 0 0 chr1 69676772 69676805 -212516859 + AT_rich Low_complexity Low_complexity 1 33 0 550 39 13 13 chr1 69677360 69677438 -212516226 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 293 302 11 44 chr1 69678340 69678522 -212515142 + CT-rich Low_complexity Low_complexity 1 176 0 221 333 142 23 chr1 69679285 69679504 -212514160 + L2 LINE L2 1974 2218 -1096 189 313 36 18 chr1 69679705 69679817 -212513847 - MIR SINE MIR -28 234 121 278 291 159 33 chr1 69679848 69679999 -212513665 - LTR67 LTR ERVL -32 525 356 198 0 0 0 chr1 69680220 69680242 -212513422 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 960 90 0 15 chr1 69680242 69680368 -212513296 - L1PA10 LINE L1 -21 6147 6022 213 121 0 0 chr1 69680933 69680966 -212512698 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 588 258 58 21 chr1 69681087 69681277 -212512387 - MIR SINE MIR -50 212 16 1513 168 13 78 chr1 69681643 69681757 -212511907 - AluJo SINE Alu -20 292 172 2478 122 3 14 chr1 69681757 69682125 -212511539 + THE1B LTR MaLR 1 364 0 1513 168 13 78 chr1 69682125 69682319 -212511345 - AluJo SINE Alu -140 172 4 33 0 0 0 chr1 69682322 69682355 -212511309 + AT_rich Low_complexity Low_complexity 1 33 0 277 284 27 0 chr1 69682363 69682437 -212511227 - MIR SINE MIR -110 152 77 349 273 154 44 chr1 69682539 69682766 -212510898 + L1MCc LINE L1 857 1108 -5315 * 426 228 48 70 chr1 69682753 69682981 -212510683 + L1MCc LINE L1 1898 2309 -4813 1056 296 100 36 chr1 69683008 69684017 -212509647 + L1MEc LINE L1 55 1128 -5268 2913 301 48 52 chr1 69684067 69685619 -212508045 + L1ME2 LINE L1 35 1581 -4815 2712 237 38 52 chr1 69685613 69686842 -212506822 + L1ME2 LINE L1 4617 5988 -415 * 2371 78 0 0 chr1 69686842 69687138 -212506526 - AluY SINE Alu -15 296 1 2712 237 38 52 chr1 69687138 69687543 -212506121 + L1ME2 LINE L1 5988 6397 -6 318 25 0 0 chr1 69688174 69688214 -212505450 + MADE1 DNA Mariner 41 80 0 203 310 47 105 chr1 69688483 69688654 -212505010 - L2 LINE L2 -85 3187 3027 292 288 147 3 chr1 69689681 69689839 -212503825 - MIR3 SINE MIR -41 167 1 195 297 47 0 chr1 69690915 69690979 -212502685 - MIR SINE MIR -71 191 125 387 317 108 12 chr1 69691251 69691292 -212502372 - MIR SINE MIR -10 252 216 305 145 159 0 chr1 69691292 69691361 -212502303 + MER116 DNA Mariner 1 80 0 387 317 108 12 chr1 69691361 69691486 -212502178 - MIR SINE MIR -46 216 70 369 109 0 0 chr1 69692097 69692152 -212501512 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 309 316 53 53 chr1 69692572 69692727 -212500937 - L2 LINE L2 -220 3052 2895 195 42 0 0 chr1 69692727 69692751 -212500913 + (TG)n Simple_repeat Simple_repeat 2 25 0 309 316 53 53 chr1 69692751 69692820 -212500844 - L2 LINE L2 -376 2896 2828 216 308 33 33 chr1 69692876 69692967 -212500697 + L2 LINE L2 3132 3222 -50 22 35 0 0 chr1 69693256 69693285 -212500379 + AT_rich Low_complexity Low_complexity 1 29 0 204 125 0 0 chr1 69693930 69693962 -212499702 + (TAA)n Simple_repeat Simple_repeat 1 32 0 286 252 17 74 chr1 69694071 69694212 -212499452 - MIR SINE MIR -62 146 12 335 281 157 7 chr1 69694322 69694475 -212499189 + MIR SINE MIR 75 250 -12 235 248 168 9 chr1 69694791 69694904 -212498760 + MIR SINE MIR 9 139 -123 217 250 150 0 chr1 69695031 69695091 -212498573 - MIR SINE MIR -70 192 124 25 65 0 0 chr1 69695863 69695909 -212497755 + AT_rich Low_complexity Low_complexity 1 46 0 4311 217 105 8 chr1 69696347 69697678 -212495986 + Charlie1 DNA MER1_type 2 2761 0 24 0 0 0 chr1 69698230 69698254 -212495410 + AT_rich Low_complexity Low_complexity 1 24 0 531 311 47 61 chr1 69698438 69698782 -212494882 - MLT1J LTR MaLR -172 339 1 6271 146 30 33 chr1 69699471 69700615 -212493049 + L1MA7 LINE L1 4130 5261 -1030 1887 171 0 0 chr1 69700615 69700913 -212492751 + AluJb SINE Alu 1 298 -14 6271 146 30 33 chr1 69700913 69701935 -212491729 + L1MA7 LINE L1 5261 6285 -6 4861 142 50 24 chr1 69702093 69703099 -212490565 + L1MA7 LINE L1 5254 6285 -6 21 0 0 0 chr1 69703933 69703954 -212489710 + AT_rich Low_complexity Low_complexity 1 21 0 212 325 146 8 chr1 69704001 69704124 -212489540 + MIR SINE MIR 107 246 -16 250 353 45 38 chr1 69704215 69704348 -212489316 - L2 LINE L2 -14 3258 3125 308 295 33 41 chr1 69705481 69705603 -212488061 - HERVL LTR ERVL -496 5158 5038 444 250 65 18 chr1 69705727 69705895 -212487769 - HERVL LTR ERVL -810 4844 4669 223 208 19 0 chr1 69706413 69706466 -212487198 - L2 LINE L2 -339 2975 2922 240 240 13 80 chr1 69706570 69706645 -212487019 + MIR SINE MIR 94 163 -99 387 291 146 48 chr1 69706712 69707007 -212486657 - L2 LINE L2 -559 2755 2432 325 255 31 20 chr1 69707174 69707272 -212486392 - MIR SINE MIR -97 165 67 204 97 0 0 chr1 69707303 69707334 -212486330 + (CAA)n Simple_repeat Simple_repeat 2 32 0 448 304 47 97 chr1 69707337 69707738 -212485926 - L2 LINE L2 -21 3251 2871 1086 281 39 53 chr1 69708051 69708485 -212485179 - LTR16B LTR ERVL -3 461 34 7002 52 7 2 chr1 69708900 69710112 -212483552 - L1PA7 LINE L1 0 6154 4942 994 65 45 7 chr1 69710112 69710266 -212483398 - L1PA7 LINE L1 -2893 3253 3094 16612 91 10 4 chr1 69710275 69711999 -212481665 - L1P LINE L1 -1216 4930 3185 2801 7 0 0 chr1 69711999 69712302 -212481362 - AluYa5 SINE Alu -8 303 1 16612 91 10 4 chr1 69712302 69712941 -212480723 - L1P LINE L1 -2961 3185 2552 454 248 16 8 chr1 69712941 69713070 -212480594 - MER104 DNA Tc2 -50 130 1 1547 204 58 9 chr1 69713178 69713526 -212480138 - MLT1A1 LTR MaLR 0 365 1 422 324 29 0 chr1 69713707 69713843 -212479821 - MER91C DNA MER1_type 0 140 1 4452 152 23 21 chr1 69714337 69715132 -212478532 - L1PA16 LINE L1 0 6166 5371 1198 143 0 0 chr1 69715155 69715351 -212478313 - L1PA14 LINE L1 -1 6160 5965 1183 194 62 67 chr1 69715501 69715692 -212477972 + MLT1B LTR MaLR 22 212 -178 2544 150 11 28 chr1 69715692 69716126 -212477538 + MSTA LTR MaLR 1 427 -1 1183 194 62 67 chr1 69716126 69716305 -212477359 + MLT1B LTR MaLR 212 390 0 209 285 36 80 chr1 69716409 69716546 -212477118 - MIR SINE MIR -54 208 78 428 286 0 17 chr1 69717536 69717655 -212476009 + CT-rich Low_complexity Low_complexity 4 120 0 409 232 24 0 chr1 69717655 69717780 -212475884 + C-rich Low_complexity Low_complexity 5 132 0 * 784 173 3 24 chr1 69717751 69718046 -212475618 + CT-rich Low_complexity Low_complexity 1 289 0 244 270 74 140 chr1 69718348 69718633 -212475031 - L2 LINE L2 -337 2977 2712 337 252 216 27 chr1 69719137 69719248 -212474416 + MIR SINE MIR 23 154 -108 453 311 8 66 chr1 69719267 69719524 -212474140 + MLT1H LTR MaLR 23 264 -285 316 202 77 39 chr1 69719633 69719737 -212473927 + MLT1E LTR MaLR 486 593 0 1607 270 58 44 chr1 69719742 69720327 -212473337 + MLT1E LTR MaLR 1 593 0 1612 199 49 63 chr1 69720386 69720893 -212472771 + MLT1D LTR MaLR 6 505 0 266 267 69 10 chr1 69721002 69721103 -212472561 + MIR SINE MIR 155 261 -1 304 294 52 59 chr1 69721343 69721496 -212472168 + L3 LINE CR1 1198 1349 -228 205 257 18 115 chr1 69722002 69722115 -212471549 + L2 LINE L2 2750 2851 -463 182 320 20 20 chr1 69722217 69722267 -212471397 - L2 LINE L2 -102 3170 3121 251 307 11 23 chr1 69722421 69722509 -212471155 + L2 LINE L2 3227 3313 0 199 341 102 0 chr1 69722713 69722801 -212470863 - MIR SINE MIR -78 130 34 232 258 61 61 chr1 69723227 69723359 -212470305 + L1MEd LINE L1 576 707 -5412 234 0 0 0 chr1 69723960 69723986 -212469678 + (TA)n Simple_repeat Simple_repeat 2 27 0 2149 131 0 0 chr1 69723986 69724284 -212469380 - AluSx SINE Alu -14 298 1 28 79 0 0 chr1 69724530 69724593 -212469071 + AT_rich Low_complexity Low_complexity 1 63 0 30 0 0 0 chr1 69724605 69724635 -212469029 + AT_rich Low_complexity Low_complexity 1 30 0 243 336 9 18 chr1 69724755 69724868 -212468796 - L3 LINE CR1 -417 1160 1049 519 246 3 179 chr1 69724892 69725283 -212468381 - L3 LINE CR1 -631 946 625 2024 55 79 0 chr1 69725748 69726001 -212467663 - AluY SINE Alu -15 296 24 2293 258 100 32 chr1 69726380 69727435 -212466229 - L2 LINE L2 0 3313 2214 222 191 48 0 chr1 69727944 69727986 -212465678 - L3 LINE CR1 -1086 491 448 296 325 88 35 chr1 69728087 69728315 -212465349 - L3 LINE CR1 -1216 361 122 319 302 52 16 chr1 69728643 69728806 -212464858 + MIR SINE MIR 9 177 -62 335 344 97 19 chr1 69728809 69728963 -212464701 - L2 LINE L2 -1 3271 3106 607 266 203 14 chr1 69729377 69729584 -212464080 + MIR SINE MIR 16 261 -1 311 284 43 19 chr1 69729668 69729879 -212463785 + L1M4 LINE L1 4127 4342 -1804 360 279 0 39 chr1 69729890 69729994 -212463670 + MIR SINE MIR 52 151 -57 380 276 49 16 chr1 69730468 69730591 -212463073 + L2 LINE L2 3185 3311 -2 266 324 104 25 chr1 69731192 69731433 -212462231 + L1MEd LINE L1 648 907 -5298 423 326 39 32 chr1 69731600 69731882 -212461782 - MLT1I LTR MaLR -110 299 16 672 282 58 40 chr1 69732035 69732605 -212461059 + L1MEd LINE L1 1055 1662 -4734 2386 83 3 0 chr1 69732665 69732967 -212460697 - AluY SINE Alu -8 303 1 328 309 112 21 chr1 69733149 69733382 -212460282 + L1MEd LINE L1 1998 2251 -4145 267 282 28 7 chr1 69733389 69733531 -212460133 + L1MEd LINE L1 2216 2360 -3855 2337 99 0 0 chr1 69733895 69734189 -212459475 - AluY SINE Alu -17 294 1 216 0 0 0 chr1 69735251 69735275 -212458389 + (TG)n Simple_repeat Simple_repeat 1 24 0 184 169 0 31 chr1 69735275 69735340 -212458324 + GA-rich Low_complexity Low_complexity 2 64 0 363 303 68 8 chr1 69736532 69736664 -212457000 - MIR SINE MIR -70 192 53 451 320 31 51 chr1 69736892 69737148 -212456516 + MIR SINE MIR 6 256 -6 824 219 161 58 chr1 69737206 69737535 -212456129 + MLT1A1 LTR MaLR 1 363 -2 390 315 47 27 chr1 69737907 69738056 -212455608 - MIR3 SINE MIR -21 187 36 247 306 61 31 chr1 69738732 69738830 -212454834 + L2 LINE L2 3212 3312 -1 429 317 32 0 chr1 69738837 69738960 -212454704 + MIR SINE MIR 60 186 -76 240 365 52 9 chr1 69739360 69739475 -212454189 - MIR SINE MIR -114 148 29 282 276 147 17 chr1 69739823 69739939 -212453725 - MIR SINE MIR -11 251 121 * 320 270 11 0 chr1 69739936 69740025 -212453639 + L2 LINE L2 2730 2819 -495 2687 89 0 0 chr1 69740395 69740775 -212452889 - L1PA13 LINE L1 -386 5782 5403 2588 89 3 3 chr1 69740791 69741178 -212452486 + L1PA13 LINE L1 5794 6180 0 228 340 11 32 chr1 69742265 69742359 -212451305 - MIR SINE MIR -148 114 23 207 304 0 0 chr1 69742532 69742578 -212451086 - L3 LINE CR1 -98 1479 1434 343 359 35 6 chr1 69742697 69742867 -212450797 - MIR SINE MIR -20 242 68 935 199 57 14 chr1 69743150 69743361 -212450303 + MER58A DNA MER1_type 3 222 -2 441 84 0 0 chr1 69743654 69743725 -212449939 + (TC)n Simple_repeat Simple_repeat 2 72 0 189 0 0 0 chr1 69743725 69743746 -212449918 + (CA)n Simple_repeat Simple_repeat 1 21 0 955 318 153 32 chr1 69743976 69744667 -212448997 + L2 LINE L2 2284 3121 -192 672 167 183 33 chr1 69744667 69744847 -212448817 - MER6B DNA MER2_type 0 210 4 955 318 153 32 chr1 69744847 69745062 -212448602 + L2 LINE L2 3121 3309 -4 211 341 61 0 chr1 69745675 69745757 -212447907 - L2 LINE L2 -17 3255 3169 34114 54 6 3 chr1 69746226 69750947 -212442717 + L1P2 LINE L1 755 5487 -667 1239 49 0 0 chr1 69751121 69751283 -212442381 - L1P LINE L1 -4141 2005 1844 12727 95 2 4 chr1 69751288 69753143 -212440521 + L1P LINE L1 7 1858 -4288 7264 47 5 3 chr1 69753149 69754507 -212439157 - L1PA5 LINE L1 -2 6152 4794 608 230 14 7 chr1 69754700 69754848 -212438816 + MER89-int LTR ERV1 1192 1340 -5461 3291 232 29 9 chr1 69755297 69756113 -212437551 + MER89-int LTR ERV1 1677 2509 -4292 192 40 0 0 chr1 69756155 69756180 -212437484 + (GA)n Simple_repeat Simple_repeat 2 26 0 708 270 108 0 chr1 69756491 69756695 -212436969 + MER89-int LTR ERV1 2547 2772 -4029 234 0 0 0 chr1 69756695 69756721 -212436943 + (TA)n Simple_repeat Simple_repeat 2 27 0 4970 56 5 6 chr1 69756723 69757367 -212436297 - L1PA5 LINE L1 0 6154 5512 1283 103 5 0 chr1 69807408 69807593 -212386071 + AluSg/x SINE Alu 122 307 -5 332 93 0 19 chr1 69807860 69807914 -212385750 + (CA)n Simple_repeat Simple_repeat 1 53 0 210 224 41 0 chr1 69810219 69810268 -212383396 + MIR SINE MIR 156 206 -56 278 257 199 58 chr1 69810540 69810711 -212382953 - MIR SINE MIR -36 226 32 426 277 71 9 chr1 69812282 69812394 -212381270 - L2 LINE L2 -3 3269 3151 180 327 97 35 chr1 69812589 69812702 -212380962 + MIR3 SINE MIR 4 123 -85 * 304 258 31 52 chr1 69812686 69812783 -212380881 + L2 LINE L2 3219 3313 0 205 346 13 13 chr1 69813592 69813670 -212379994 + L2 LINE L2 2905 2982 -290 186 314 136 8 chr1 69814470 69814588 -212379076 + L2 LINE L2 3180 3312 -1 186 103 0 0 chr1 69814665 69814694 -212378970 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 452 233 171 49 chr1 69814798 69815043 -212378621 + Charlie7 DNA MER1_type 55 329 -2283 192 250 50 0 chr1 69815392 69815452 -212378212 + MIR SINE MIR 72 134 -74 356 307 31 16 chr1 69817980 69818107 -212375557 - L2 LINE L2 -5 3308 3180 365 247 20 70 chr1 69818434 69818627 -212375037 + MLT1J LTR MaLR 286 439 -7 341 191 65 0 chr1 69818756 69818832 -212374832 - MIR SINE MIR -94 114 45 224 208 0 38 chr1 69819144 69819197 -212374467 - MIR3 SINE MIR -4 204 154 378 282 92 26 chr1 69819256 69819451 -212374213 - L3 LINE CR1 -190 1387 1180 181 79 0 53 chr1 69819451 69819489 -212374175 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 24 0 0 0 chr1 69819764 69819788 -212373876 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr1 69821057 69821093 -212372571 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 300 0 0 chr1 69821429 69821479 -212372185 + L2 LINE L2 3218 3267 -5 503 297 7 0 chr1 69822925 69823073 -212370591 + MIR SINE MIR 113 261 -1 186 309 36 0 chr1 69823489 69823544 -212370120 - L2 LINE L2 -15 3298 3242 28 91 0 0 chr1 69823787 69823864 -212369800 + AT_rich Low_complexity Low_complexity 1 77 0 424 246 63 14 chr1 69824312 69824454 -212369210 - MER20B DNA MER1_type -621 162 14 190 254 0 36 chr1 69824537 69824592 -212369072 + L2 LINE L2 3169 3221 -92 189 114 29 0 chr1 69825890 69825925 -212367739 - L2 LINE L2 0 3313 3278 251 188 51 0 chr1 69826422 69826481 -212367183 + MIR SINE MIR 45 114 -94 405 314 107 69 chr1 69826485 69826775 -212366889 - L2 LINE L2 -4 3268 2968 587 258 158 32 chr1 69826827 69827017 -212366647 - MIR SINE MIR -6 256 43 2374 164 21 7 chr1 69827258 69827678 -212365986 + MSTA LTR MaLR 1 426 -2 1750 124 50 60 chr1 69828071 69828370 -212365294 + AluJb SINE Alu 1 296 -16 944 106 42 106 chr1 69829217 69829434 -212364230 + MER20 DNA MER1_type 17 219 0 2440 84 3 0 chr1 69829465 69829775 -212363889 - AluSp SINE Alu -2 311 1 249 163 138 12 chr1 69829871 69829951 -212363713 - L2 LINE L2 -27 3286 3197 340 215 19 19 chr1 69830087 69830194 -212363470 + GA-rich Low_complexity Low_complexity 4 110 0 2232 109 0 0 chr1 69830982 69831276 -212362388 - AluSg SINE Alu -16 294 1 390 309 237 0 chr1 69832085 69832279 -212361385 - MIR SINE MIR -3 259 20 1765 177 40 6 chr1 69833388 69833739 -212359925 - MLT1A1 LTR MaLR -2 363 1 1936 129 7 0 chr1 69834341 69834620 -212359044 + AluSx SINE Alu 32 312 0 2395 86 0 16 chr1 69834732 69835047 -212358617 + AluY SINE Alu 1 310 -1 279 225 250 0 chr1 69835950 69836030 -212357634 - MIR SINE MIR -93 169 70 2184 112 0 3 chr1 69836594 69836888 -212356776 - AluSx SINE Alu -19 293 1 430 302 162 0 chr1 69836891 69837070 -212356594 + L2 LINE L2 2589 2796 -518 795 199 139 0 chr1 69837070 69837236 -212356428 + MER5A DNA MER1_type 1 189 0 860 259 48 65 chr1 69837253 69837651 -212356013 + L2 LINE L2 2916 3306 -7 372 229 12 0 chr1 69837673 69837756 -212355908 + MIR SINE MIR 66 149 -113 223 288 0 0 chr1 69840070 69840129 -212353535 + (TA)n Simple_repeat Simple_repeat 2 60 0 280 196 0 43 chr1 69840153 69840245 -212353419 + (TA)n Simple_repeat Simple_repeat 1 88 0 669 309 33 12 chr1 69842094 69842337 -212351327 - MIR SINE MIR -13 249 2 1670 116 45 113 chr1 69842451 69842849 -212350815 - THE1C LTR MaLR -4 371 1 197 322 17 0 chr1 69843216 69843275 -212350389 + L2 LINE L2 3239 3298 -15 2157 110 0 13 chr1 69846045 69846353 -212347311 - AluSg SINE Alu -5 305 2 1952 110 3 80 chr1 69846490 69846816 -212346848 + AluY SINE Alu 1 301 -10 352 201 47 67 chr1 69848566 69848715 -212344949 + MIR SINE MIR 107 252 -10 2296 77 3 7 chr1 69849089 69849388 -212344276 - AluSc SINE Alu -11 298 1 269 295 101 39 chr1 69849761 69849890 -212343774 - MIR SINE MIR -38 224 88 307 277 36 0 chr1 69850162 69850245 -212343419 - MIR SINE MIR -129 133 48 1493 110 9 0 chr1 69850510 69850729 -212342935 + AluSg/x SINE Alu 82 302 -8 619 223 0 40 chr1 69851582 69851730 -212341934 - MIR SINE MIR -10 252 111 774 220 53 16 chr1 69851803 69852029 -212341635 + MIR SINE MIR 2 236 -26 529 261 79 44 chr1 69852404 69852607 -212341057 - MIR SINE MIR -51 211 2 793 295 159 66 chr1 69852798 69853391 -212340273 - L2 LINE L2 -86 3227 2578 246 257 98 0 chr1 69853512 69853609 -212340055 - MIR SINE MIR -48 160 54 254 98 0 49 chr1 69854596 69854657 -212339007 + (T)n Simple_repeat Simple_repeat 1 58 0 23 54 0 0 chr1 69856678 69856715 -212336949 + AT_rich Low_complexity Low_complexity 1 37 0 392 281 81 8 chr1 69859300 69859442 -212334222 - MIR3 SINE MIR -65 143 14 767 223 229 25 chr1 69859675 69859998 -212333666 + LTR16C LTR ERVL 96 484 -7 332 285 164 29 chr1 69860183 69860390 -212333274 + MIR SINE MIR 27 261 -1 297 0 0 0 chr1 69861085 69861118 -212332546 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 262 165 19 chr1 69861192 69861295 -212332369 + MIR SINE MIR 87 204 -58 2433 63 0 7 chr1 69861650 69861949 -212331715 - AluY SINE Alu -14 297 1 366 247 71 41 chr1 69862019 69862189 -212331475 + L1ME4a LINE L1 5945 6119 -2 21 36 0 0 chr1 69862189 69862217 -212331447 + AT_rich Low_complexity Low_complexity 1 28 0 250 354 170 14 chr1 69862617 69862905 -212330759 + L2 LINE L2 2850 3182 -90 1895 168 0 0 chr1 69863330 69863640 -212330024 + AluSx SINE Alu 1 310 0 349 319 117 21 chr1 69864802 69864990 -212328674 - MIR SINE MIR -10 252 47 2104 132 13 7 chr1 69865079 69865389 -212328275 + AluSx SINE Alu 1 312 0 242 310 120 0 chr1 69865392 69865492 -212328172 - MIR SINE MIR -81 127 16 448 258 41 81 chr1 69865617 69865838 -212327826 + MIR SINE MIR 11 222 -40 240 298 18 0 chr1 69869087 69869144 -212324520 + L2 LINE L2 3205 3262 -10 2322 88 0 0 chr1 69871612 69871906 -212321758 - AluY SINE Alu -17 294 1 281 346 62 19 chr1 69872335 69872497 -212321167 + MIR SINE MIR 20 188 -74 2422 84 0 3 chr1 69874006 69874316 -212319348 + AluY SINE Alu 1 309 -2 365 313 82 6 chr1 69874546 69874728 -212318936 + MLT1L LTR MaLR 410 605 -10 493 259 58 54 chr1 69874764 69874969 -212318695 + MER102a DNA MER1_type 109 314 -16 431 311 98 29 chr1 69875236 69875480 -212318184 - MIR SINE MIR 0 262 2 316 232 264 8 chr1 69876415 69876540 -212317124 + MER5A DNA MER1_type 4 160 -29 289 271 0 0 chr1 69877062 69877132 -212316532 - Tigger5 DNA MER2_type 0 2323 2254 225 65 0 0 chr1 69877138 69877169 -212316495 + (TG)n Simple_repeat Simple_repeat 2 32 0 2198 122 0 0 chr1 69877542 69877837 -212315827 + AluSx SINE Alu 2 296 -16 941 204 6 22 chr1 69878339 69878520 -212315144 - MER5A DNA MER1_type -6 183 6 271 357 43 7 chr1 69878524 69878664 -212315000 - MIR3 SINE MIR -48 160 16 2442 80 0 0 chr1 69878774 69879074 -212314590 + AluSx SINE Alu 1 300 -12 584 234 23 47 chr1 69879082 69879253 -212314411 - MIR SINE MIR -65 197 31 452 263 160 0 chr1 69879235 69879391 -212314273 + MER5A DNA MER1_type 9 189 0 * 224 226 38 19 chr1 69879392 69879445 -212314219 - MIR SINE MIR -136 72 19 314 177 32 0 chr1 69882507 69882569 -212311095 + MIR3 SINE MIR 122 185 -23 189 267 0 33 chr1 69882530 69882590 -212311074 + L3b LINE CR1 1526 1583 0 * 2088 93 21 3 chr1 69882609 69882900 -212310764 - AluSx SINE Alu -16 296 1 2847 16 0 0 chr1 69883057 69883369 -212310295 - AluYb8 SINE Alu -6 312 1 554 282 103 21 chr1 69883584 69883818 -212309846 - MIR SINE MIR 0 262 10 1763 157 7 14 chr1 69884008 69884302 -212309362 + AluJb SINE Alu 1 292 -20 1780 114 35 55 chr1 69884305 69884628 -212309036 + AluSx SINE Alu 1 317 0 241 331 0 105 chr1 69885641 69885774 -212307890 - MIR SINE MIR -56 152 34 1071 137 12 6 chr1 69887384 69887552 -212306112 + AluSg/x SINE Alu 131 299 -11 186 318 71 26 chr1 69888470 69888624 -212305040 - MIR3 SINE MIR -45 163 3 418 270 26 72 chr1 69889007 69889159 -212304505 - MIR SINE MIR -117 145 1 21 0 0 0 chr1 69889414 69889435 -212304229 + AT_rich Low_complexity Low_complexity 1 21 0 1411 166 27 103 chr1 69889566 69889897 -212303767 + AluJo SINE Alu 1 306 -6 341 296 91 50 chr1 69890318 69890517 -212303147 - L2 LINE L2 -253 3019 2813 25 0 0 0 chr1 69891179 69891204 -212302460 + AT_rich Low_complexity Low_complexity 1 25 0 2220 119 0 0 chr1 69891308 69891603 -212302061 + AluSx SINE Alu 1 295 -17 211 343 14 0 chr1 69892151 69892221 -212301443 - L2 LINE L2 -210 3062 2992 1385 226 143 13 chr1 69892392 69892839 -212300825 + MLT1D LTR MaLR 1 505 0 574 220 0 9 chr1 69893180 69893289 -212300375 + L2 LINE L2 3205 3312 -1 432 298 13 40 chr1 69894089 69894240 -212299424 - MIR SINE MIR -97 165 19 829 202 51 6 chr1 69894437 69894615 -212299049 - MER5A DNA MER1_type -3 186 1 382 196 165 21 chr1 69894637 69894734 -212298930 + L2 LINE L2 3203 3313 0 1860 153 3 20 chr1 69895069 69895370 -212298294 + AluJb SINE Alu 1 296 -16 188 229 0 42 chr1 69895518 69895566 -212298098 - L2 LINE L2 -8 3264 3219 440 340 213 14 chr1 69897548 69897966 -212295698 - L3 LINE CR1 -251 1326 826 216 0 0 0 chr1 69898857 69898881 -212294783 + (T)n Simple_repeat Simple_repeat 1 24 0 184 341 80 11 chr1 69898995 69899083 -212294581 + L3b LINE CR1 1452 1545 -38 224 247 96 0 chr1 69899490 69899563 -212294101 - MIR SINE MIR -74 188 109 2031 118 48 0 chr1 69899563 69899852 -212293812 - AluSx SINE Alu -9 303 1 1628 160 4 8 chr1 69900012 69900317 -212293347 + AluSx SINE Alu 24 327 0 1930 177 3 0 chr1 69900472 69900782 -212292882 + AluJb SINE Alu 1 311 -1 226 217 0 22 chr1 69900898 69900944 -212292720 + GA-rich Low_complexity Low_complexity 2 46 0 278 348 17 17 chr1 69901161 69901276 -212292388 + MER5B DNA MER1_type 1 115 -63 416 299 164 6 chr1 69901471 69901648 -212292016 + MIR SINE MIR 48 252 -10 458 265 8 115 chr1 69901896 69902130 -212291534 - MIR SINE MIR -19 243 31 1675 161 7 7 chr1 69903186 69903459 -212290205 + AluJo SINE Alu 27 299 -13 227 372 14 48 chr1 69903504 69903649 -212290015 + MIR3 SINE MIR 34 173 -35 701 186 0 0 chr1 69904041 69904159 -212289505 - FLAM_C SINE Alu -25 118 1 390 21 0 0 chr1 69904579 69904626 -212289038 + (CA)n Simple_repeat Simple_repeat 2 48 0 1828 86 127 11 chr1 69904734 69905001 -212288663 - AluSg SINE Alu -12 298 1 996 119 0 0 chr1 69905012 69905146 -212288518 - FAM SINE Alu -23 162 29 264 405 8 8 chr1 69905166 69905292 -212288372 - MIR3 SINE MIR -81 127 2 545 242 42 8 chr1 69905304 69905424 -212288240 - L2 LINE L2 -1 3312 3189 24 0 0 0 chr1 69905527 69905551 -212288113 + AT_rich Low_complexity Low_complexity 1 24 0 2355 97 3 3 chr1 69909109 69909418 -212284246 + AluSx SINE Alu 1 309 -3 2715 42 0 0 chr1 69909636 69909944 -212283720 + AluY SINE Alu 1 308 -3 246 269 144 29 chr1 69909986 69910090 -212283574 + MIR3 SINE MIR 78 193 -15 1449 135 100 27 chr1 69910255 69910514 -212283150 - AluJb SINE Alu -18 294 17 722 147 14 63 chr1 69910611 69910754 -212282910 + AluJo SINE Alu 1 136 -176 287 275 99 11 chr1 69910828 69910919 -212282745 - L2 LINE L2 -37 3235 3137 216 369 103 15 chr1 69911180 69911375 -212282289 + L3 LINE CR1 398 609 -968 2104 121 0 17 chr1 69911385 69911683 -212281981 - AluY SINE Alu -17 294 2 802 93 0 9 chr1 69911684 69911791 -212281873 - AluSg/x SINE Alu -15 297 192 1131 129 21 47 chr1 69911795 69911988 -212281676 + AluSx SINE Alu 26 213 -99 548 112 0 11 chr1 69912089 69912178 -212281486 + AluSx SINE Alu 217 304 -8 220 206 130 65 chr1 69912283 69912375 -212281289 + L3 LINE CR1 630 727 -850 465 34 0 0 chr1 69912475 69912534 -212281130 + (TG)n Simple_repeat Simple_repeat 2 60 0 462 303 32 22 chr1 69912605 69912790 -212280874 + L3 LINE CR1 1268 1454 -123 343 335 80 16 chr1 69912815 69913003 -212280661 + MIR SINE MIR 47 246 -16 231 250 174 11 chr1 69913040 69913132 -212280532 + L3 LINE CR1 1436 1542 -35 22 0 0 0 chr1 69913882 69913904 -212279760 + AT_rich Low_complexity Low_complexity 1 22 0 1049 95 12 12 chr1 69916042 69916211 -212277453 + L1PA10 LINE L1 5999 6167 -1 213 240 0 0 chr1 69916930 69916980 -212276684 + MIR3 SINE MIR 156 205 -3 252 244 22 67 chr1 69918534 69918624 -212275040 + MIR SINE MIR 19 104 -158 450 0 0 0 chr1 69918697 69918747 -212274917 + (CA)n Simple_repeat Simple_repeat 2 51 0 601 307 88 12 chr1 69918808 69919059 -212274605 + L2 LINE L2 3043 3312 -1 2328 109 0 3 chr1 69919192 69919505 -212274159 - AluSx SINE Alu 0 312 1 191 264 208 14 chr1 69919592 69919664 -212274000 + L2 LINE L2 3168 3253 -19 2079 136 3 3 chr1 69922125 69922435 -212271229 + AluSx SINE Alu 1 310 -2 1023 174 50 64 chr1 69922899 69923118 -212270546 - AluJb SINE Alu -12 300 85 2095 129 3 6 chr1 69923784 69924095 -212269569 - AluSq SINE Alu -3 310 1 213 233 0 0 chr1 69924955 69924998 -212268666 + (CATA)n Simple_repeat Simple_repeat 4 46 0 22 0 0 0 chr1 69925260 69925282 -212268382 + AT_rich Low_complexity Low_complexity 1 22 0 2177 106 16 3 chr1 69927921 69928224 -212265440 + AluSq SINE Alu 6 312 -1 483 335 40 31 chr1 69929547 69929774 -212263890 - MIR SINE MIR -2 260 32 2079 125 0 0 chr1 69929928 69930215 -212263449 + AluSx SINE Alu 1 287 -25 621 40 0 0 chr1 69930215 69930291 -212263373 + (TA)n Simple_repeat Simple_repeat 2 77 0 639 262 178 9 chr1 69930381 69930595 -212263069 + MIR SINE MIR 8 257 -5 200 292 0 0 chr1 69931729 69931777 -212261887 + GA-rich Low_complexity Low_complexity 70 117 0 22 35 0 0 chr1 69932930 69932959 -212260705 + AT_rich Low_complexity Low_complexity 1 29 0 36 0 0 0 chr1 69934688 69934724 -212258940 + AT_rich Low_complexity Low_complexity 1 36 0 639 257 12 41 chr1 69935303 69935474 -212258190 - MIR SINE MIR -90 172 7 978 47 79 0 chr1 69935742 69935869 -212257795 + MER85 DNA T2_type 1 137 -2 1081 114 6 24 chr1 69936118 69936285 -212257379 - AluJb SINE Alu -1 311 148 248 347 40 13 chr1 69937133 69937283 -212256381 + L3 LINE CR1 1257 1410 -167 207 0 0 0 chr1 69938191 69938214 -212255450 + (T)n Simple_repeat Simple_repeat 1 23 0 533 234 156 12 chr1 69938722 69938889 -212254775 + MIR SINE MIR 2 192 -70 23 33 0 0 chr1 69939712 69939742 -212253922 + AT_rich Low_complexity Low_complexity 1 30 0 1947 125 17 27 chr1 69939751 69939884 -212253780 + AluSx SINE Alu 1 134 -178 252 0 0 0 chr1 69939884 69939912 -212253752 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1947 125 17 27 chr1 69939912 69940073 -212253591 + AluSx SINE Alu 134 292 -20 392 260 130 0 chr1 69940076 69940199 -212253465 - L1ME4a LINE L1 -16 6105 5967 436 260 39 26 chr1 69941674 69941828 -212251836 - MIR SINE MIR -48 214 59 1673 164 7 0 chr1 69941900 69942180 -212251484 - AluJb SINE Alu -4 308 27 243 342 25 32 chr1 69944767 69944925 -212248739 - MIR SINE MIR -105 157 1 2127 122 0 0 chr1 69946923 69947209 -212246455 + AluSx SINE Alu 1 286 -26 2192 112 0 40 chr1 69947242 69947565 -212246099 - AluSg SINE Alu 0 310 1 619 328 39 9 chr1 69947983 69948212 -212245452 + MIR SINE MIR 21 256 -6 433 203 0 13 chr1 69948573 69948652 -212245012 + MER2 DNA MER2_type 2 79 -266 398 219 0 0 chr1 69948654 69948718 -212244946 - MER2 DNA MER2_type 0 345 282 310 289 58 0 chr1 69948924 69949028 -212244636 - L1ME4a LINE L1 -2003 5805 5696 2129 122 3 0 chr1 69949147 69949442 -212244222 + AluSq SINE Alu 1 296 -17 2529 60 0 0 chr1 69949630 69949931 -212243733 + AluY SINE Alu 1 301 -10 1763 91 4 0 chr1 69949931 69950190 -212243474 + AluSc SINE Alu 50 310 0 25 31 0 0 chr1 69951664 69951696 -212241968 + AT_rich Low_complexity Low_complexity 1 32 0 27 81 0 0 chr1 69953731 69953793 -212239871 + AT_rich Low_complexity Low_complexity 1 62 0 24 32 0 0 chr1 69954076 69954107 -212239557 + AT_rich Low_complexity Low_complexity 1 31 0 41 36 0 0 chr1 69954326 69954381 -212239283 + AT_rich Low_complexity Low_complexity 1 55 0 327 196 262 19 chr1 69954549 69954656 -212239008 - MER103 DNA DNA -31 135 3 22 70 0 0 chr1 69955318 69955361 -212238303 + AT_rich Low_complexity Low_complexity 1 43 0 2376 79 0 0 chr1 69955455 69955746 -212237918 - AluSc SINE Alu -18 291 1 207 0 0 0 chr1 69956846 69956869 -212236795 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr1 69956894 69956918 -212236746 + AT_rich Low_complexity Low_complexity 1 24 0 723 312 49 18 chr1 69959979 69960485 -212233179 + L1M4 LINE L1 3914 4435 -1711 875 217 6 17 chr1 69961881 69962056 -212231608 + FAM SINE Alu 1 173 -2 303 317 71 0 chr1 69962112 69962229 -212231435 - MIR SINE MIR -66 142 43 266 310 139 19 chr1 69963421 69963579 -212230085 - MER5A DNA MER1_type -6 183 7 599 259 49 0 chr1 69963816 69963978 -212229686 + MIR SINE MIR 80 249 -13 2444 69 3 0 chr1 69964283 69964586 -212229078 + AluSp SINE Alu 1 304 -9 2311 60 0 3 chr1 69965377 69965730 -212227934 + AluY SINE Alu 1 352 0 2067 155 10 0 chr1 69965730 69966039 -212227625 + AluJb SINE Alu 1 312 0 444 222 15 74 chr1 69967202 69967337 -212226327 + L2 LINE L2 3187 3313 0 459 69 0 0 chr1 69967481 69967553 -212226111 - L1PB1 LINE L1 -1 6150 6079 298 279 42 79 chr1 69967928 69968118 -212225546 + MIR SINE MIR 80 262 0 23 68 0 0 chr1 69969218 69969262 -212224402 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr1 69975681 69975716 -212217948 + AT_rich Low_complexity Low_complexity 1 35 0 385 280 0 28 chr1 69976693 69976800 -212216864 + MIR3 SINE MIR 82 185 -23 188 394 91 12 chr1 69978270 69978435 -212215229 - L2 LINE L2 -8 3264 3087 395 153 0 0 chr1 69979683 69979742 -212213922 + AluS SINE Alu 1 59 -249 1787 122 0 42 chr1 69979742 69980028 -212213636 + AluSx SINE Alu 28 301 -11 21 0 0 0 chr1 69980931 69980952 -212212712 + AT_rich Low_complexity Low_complexity 1 21 0 201 311 163 22 chr1 69981540 69981675 -212211989 + MIR SINE MIR 109 262 0 1595 80 21 55 chr1 69986205 69986342 -212207322 + MER30 DNA MER1_type 1 128 -102 2284 93 0 26 chr1 69986342 69986654 -212207010 + AluSx SINE Alu 1 304 -8 1595 80 21 55 chr1 69986654 69986754 -212206910 + MER30 DNA MER1_type 128 230 0 198 0 0 0 chr1 69987210 69987232 -212206432 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2303 101 0 13 chr1 69987524 69987830 -212205834 - AluSg SINE Alu -8 302 1 915 198 102 92 chr1 69987893 69988176 -212205488 - AluJo SINE Alu -5 307 22 1986 144 27 0 chr1 69988923 69989215 -212204449 - AluJo SINE Alu -12 300 1 444 250 9 37 chr1 69990614 69990722 -212202942 + L2 LINE L2 3196 3300 -13 2427 55 0 0 chr1 69990784 69991074 -212202590 - AluY SINE Alu -21 290 1 1927 140 95 6 chr1 69991470 69991806 -212201858 + MER47A DNA MER2_type 1 366 0 2020 128 17 0 chr1 69993907 69994196 -212199468 + AluSx SINE Alu 1 294 -18 2083 129 0 22 chr1 69994558 69994875 -212198789 + AluSq SINE Alu 3 312 -1 270 264 139 42 chr1 69996262 69996406 -212197258 - MIR3 SINE MIR -17 191 34 2249 88 0 61 chr1 69996564 69996894 -212196770 - AluSx SINE Alu -2 310 1 221 246 159 0 chr1 69996933 69997002 -212196662 - L2 LINE L2 -9 3263 3184 326 308 0 20 chr1 69997156 69997286 -212196378 - MIR SINE MIR -75 133 5 23 0 0 0 chr1 69997392 69997415 -212196249 + AT_rich Low_complexity Low_complexity 1 23 0 2266 95 3 3 chr1 69997421 69997717 -212195947 + AluSx SINE Alu 1 296 -16 262 250 130 10 chr1 69998029 69998129 -212195535 + L2 LINE L2 3201 3312 -1 325 304 0 48 chr1 70000413 70000538 -212193126 - MIR SINE MIR -56 206 88 183 294 92 28 chr1 70003797 70003906 -212189758 - L2 LINE L2 -5 3308 3193 27 49 0 0 chr1 70006070 70006111 -212187553 + AT_rich Low_complexity Low_complexity 1 41 0 244 221 35 23 chr1 70006891 70006977 -212186687 + (TTTAA)n Simple_repeat Simple_repeat 4 90 0 26 50 0 0 chr1 70006991 70007031 -212186633 + AT_rich Low_complexity Low_complexity 1 40 0 1957 111 0 15 chr1 70008702 70008973 -212184691 + AluSg SINE Alu 1 267 -43 588 307 60 19 chr1 70009001 70009216 -212184448 + MIR SINE MIR 35 258 -4 264 149 0 0 chr1 70010629 70010676 -212182988 + (TATG)n Simple_repeat Simple_repeat 1 47 0 407 267 122 32 chr1 70011023 70011158 -212182506 + MIR SINE MIR 4 168 -94 2063 128 20 0 chr1 70011158 70011464 -212182200 + AluSx SINE Alu 1 312 0 407 267 122 32 chr1 70011464 70011549 -212182115 + MIR SINE MIR 168 244 -18 199 323 0 0 chr1 70012031 70012093 -212181571 + L2 LINE L2 3250 3311 -2 2268 108 0 34 chr1 70013609 70013932 -212179732 + AluSx SINE Alu 1 312 0 2343 80 0 3 chr1 70016702 70017001 -212176663 + AluY SINE Alu 1 298 -13 1145 309 95 18 chr1 70017123 70017618 -212176046 - L2 LINE L2 -1 3312 2775 267 323 0 40 chr1 70017668 70017767 -212175897 - L2 LINE L2 0 3313 3219 728 100 0 0 chr1 70018089 70018189 -212175475 + AluJb SINE Alu 11 110 -202 379 100 0 0 chr1 70018223 70018283 -212175381 - MER53 DNA DNA -12 177 118 283 195 182 0 chr1 70018281 70018358 -212175306 + MER53 DNA DNA 98 188 -1 * 1380 288 64 9 chr1 70019160 70019344 -212174320 - LTR16B LTR ERVL 0 464 292 1714 161 0 14 chr1 70019344 70019624 -212174040 - AluJb SINE Alu -34 278 3 1380 288 64 9 chr1 70019624 70019877 -212173787 - LTR16B LTR ERVL -172 292 3 788 275 28 5 chr1 70070396 70070607 -212123057 + MIR SINE MIR 45 260 -2 509 272 9 0 chr1 70072148 70072262 -212121402 + L2 LINE L2 3191 3305 -8 292 330 193 0 chr1 70072952 70073075 -212120589 + MIR SINE MIR 15 113 -149 2144 172 0 0 chr1 70073075 70073412 -212120252 + MER1B DNA MER1_type 1 337 0 292 330 193 0 chr1 70073412 70073485 -212120179 + MIR SINE MIR 113 249 -13 249 224 129 24 chr1 70073555 70073640 -212120024 - MIR SINE MIR -85 123 30 194 309 0 59 chr1 70073941 70074009 -212119655 + MIR SINE MIR 83 146 -62 2146 110 73 14 chr1 70074311 70074665 -212118999 - THE1C LTR MaLR 0 375 1 2612 59 0 0 chr1 70074738 70075045 -212118619 - AluY SINE Alu -4 307 1 299 361 22 55 chr1 70075053 70075236 -212118428 + L2 LINE L2 2919 3095 -177 294 385 7 21 chr1 70075400 70075543 -212118121 + MIR SINE MIR 2 142 -120 1749 149 0 90 chr1 70077128 70077471 -212116193 - AluJo SINE Alu 0 312 1 221 357 14 0 chr1 70077750 70077820 -212115844 - L2 LINE L2 -3 3269 3199 1493 196 0 39 chr1 70077921 70078232 -212115432 + AluJo SINE Alu 3 301 -11 184 272 82 89 chr1 70078334 70078492 -212115172 + L2 LINE L2 2927 3083 -189 1092 167 4 4 chr1 70078517 70078775 -212114889 + MER47A DNA MER2_type 1 357 -9 303 314 67 19 chr1 70078838 70078943 -212114721 + L2 LINE L2 3163 3272 0 815 234 6 0 chr1 70079292 70079467 -212114197 - MER58A DNA MER1_type 0 224 49 321 26 0 0 chr1 70080329 70080367 -212113297 + (CA)n Simple_repeat Simple_repeat 2 39 0 188 354 42 52 chr1 70080408 70080600 -212113064 - L2 LINE L2 -217 3055 2866 484 332 39 21 chr1 70081996 70082236 -212111428 - MIR SINE MIR -8 254 13 1582 172 20 43 chr1 70083158 70083460 -212110204 - AluJo SINE Alu -17 295 1 227 306 153 0 chr1 70083736 70083834 -212109830 - L2 LINE L2 -8 3264 3152 273 343 137 55 chr1 70084452 70084744 -212108920 + L2 LINE L2 2599 2914 -400 347 314 114 32 chr1 70085073 70085353 -212108311 + L2 LINE L2 2965 3267 -5 275 274 60 12 chr1 70085783 70085867 -212107797 + L2 LINE L2 3221 3308 -5 2278 112 3 6 chr1 70085948 70086260 -212107404 - AluSx SINE Alu -1 311 1 202 70 0 47 chr1 70087129 70087172 -212106492 + (TTTG)n Simple_repeat Simple_repeat 1 41 0 1421 98 10 10 chr1 70087172 70087370 -212106294 - AluSg/x SINE Alu -32 280 83 772 74 0 0 chr1 70087370 70087465 -212106199 - AluSg SINE Alu -177 133 39 445 340 32 0 chr1 70087889 70088045 -212105619 + MIR SINE MIR 9 169 -93 398 208 47 67 chr1 70088235 70088384 -212105280 + L1MD2 LINE L1 5996 6141 -25 462 359 6 25 chr1 70088496 70088655 -212105009 - L2 LINE L2 0 3272 3117 396 0 0 0 chr1 70089355 70089399 -212104265 + (TG)n Simple_repeat Simple_repeat 2 45 0 370 259 35 91 chr1 70090661 70090818 -212102846 - MIR SINE MIR -73 135 9 2367 78 10 0 chr1 70090895 70091189 -212102475 + AluSp SINE Alu 1 297 -16 755 260 103 21 chr1 70091395 70091521 -212102143 + L2 LINE L2 3009 3123 -190 2231 107 3 3 chr1 70091521 70091819 -212101845 - AluSx SINE Alu -14 298 1 755 260 103 21 chr1 70091819 70091973 -212101691 + L2 LINE L2 3123 3312 -1 370 296 112 12 chr1 70092434 70092516 -212101148 + MER5A DNA MER1_type 4 76 -113 1628 167 11 19 chr1 70092516 70092786 -212100878 + AluJo SINE Alu 42 309 -3 370 296 112 12 chr1 70092786 70092872 -212100792 + MER5A DNA MER1_type 76 189 0 216 406 10 10 chr1 70092940 70093036 -212100628 - L3b LINE CR1 -32 1551 1456 22 35 0 0 chr1 70094114 70094143 -212099521 + AT_rich Low_complexity Low_complexity 1 29 0 2149 115 0 3 chr1 70094213 70094508 -212099156 + AluSq SINE Alu 1 294 -19 264 250 40 26 chr1 70095429 70095505 -212098159 + L2 LINE L2 3237 3313 0 251 280 70 63 chr1 70096007 70096187 -212097477 + MIR SINE MIR 20 198 -64 275 287 39 62 chr1 70096378 70096507 -212097157 - L2 LINE L2 -4 3268 3143 22 0 0 0 chr1 70097068 70097090 -212096574 + AT_rich Low_complexity Low_complexity 1 22 0 318 176 0 0 chr1 70097292 70097343 -212096321 - MIR SINE MIR -3 259 209 220 244 0 0 chr1 70097343 70097388 -212096276 + (TA)n Simple_repeat Simple_repeat 2 46 0 1149 171 19 0 chr1 70101482 70101687 -212091977 + MER3 DNA MER1_type 1 209 0 278 296 99 0 chr1 70103142 70103223 -212090441 + MIR SINE MIR 3 91 -171 * 1096 293 58 29 chr1 70103196 70103677 -212089987 + L2 LINE L2 1544 2038 -1276 343 308 65 77 chr1 70104333 70104511 -212089153 + MIR SINE MIR 19 195 -67 2248 110 0 19 chr1 70104511 70104821 -212088843 + AluSx SINE Alu 5 308 -4 343 308 65 77 chr1 70104821 70104889 -212088775 + MIR SINE MIR 195 262 0 1900 184 67 123 chr1 70106126 70106811 -212086853 - MLT1E1 LTR MaLR -7 647 1 1589 164 33 72 chr1 70106812 70106969 -212086695 - AluJo SINE Alu -20 292 151 2342 113 0 0 chr1 70106969 70107278 -212086386 - AluSc SINE Alu 0 309 1 1589 164 33 72 chr1 70107278 70107424 -212086240 - AluJo SINE Alu -161 151 1 184 283 0 0 chr1 70109328 70109374 -212084290 - L2 LINE L2 -65 3248 3203 476 257 201 3 chr1 70109969 70110288 -212083376 - L1ME4a LINE L1 -14 6107 5726 211 274 0 0 chr1 70111233 70111295 -212082369 + (TG)n Simple_repeat Simple_repeat 1 62 0 209 152 130 0 chr1 70112392 70112438 -212081226 - L2 LINE L2 0 3272 3221 2180 104 0 17 chr1 70112522 70112819 -212080845 + AluSx SINE Alu 1 292 -20 2173 159 6 3 chr1 70114349 70114713 -212078951 - MLT1A1 LTR MaLR 0 365 1 371 283 118 47 chr1 70114713 70114925 -212078739 + MIR SINE MIR 14 240 -22 222 37 0 0 chr1 70115037 70115064 -212078600 + (T)n Simple_repeat Simple_repeat 1 27 0 189 102 102 102 chr1 70115279 70115328 -212078336 + L2 LINE L2 3264 3312 -1 306 288 53 23 chr1 70115606 70115738 -212077926 + MIR SINE MIR 56 191 -71 400 315 97 44 chr1 70116301 70116405 -212077259 - MLT1J LTR MaLR -1 510 413 1652 183 34 3 chr1 70116405 70116700 -212076964 + AluJo SINE Alu 1 304 -8 400 315 97 44 chr1 70116700 70117068 -212076596 - MLT1J LTR MaLR -98 413 13 252 339 102 0 chr1 70117513 70117640 -212076024 - L2 LINE L2 -9 3304 3165 363 311 50 0 chr1 70118330 70118449 -212075215 + L2 LINE L2 3189 3313 0 1782 129 4 15 chr1 70118605 70118911 -212074753 - AluJo SINE Alu 0 326 24 477 0 0 0 chr1 70119008 70119061 -212074603 + (CA)n Simple_repeat Simple_repeat 2 54 0 600 101 0 0 chr1 70120811 70120900 -212072764 + (TC)n Simple_repeat Simple_repeat 1 89 0 877 325 12 45 chr1 70120922 70121343 -212072321 - MLT1K LTR MaLR -181 407 1 303 242 32 0 chr1 70121606 70121668 -212071996 + L2 LINE L2 3248 3311 -2 2145 114 0 4 chr1 70121765 70122045 -212071619 - AluSg SINE Alu -31 279 1 210 278 10 72 chr1 70122074 70122171 -212071493 - MIR SINE MIR -123 139 49 1820 185 7 0 chr1 70122399 70122701 -212070963 + AluJb SINE Alu 1 304 -8 21 36 0 0 chr1 70123517 70123545 -212070119 + AT_rich Low_complexity Low_complexity 1 28 0 314 294 112 28 chr1 70123610 70123753 -212069911 - MIR3 SINE MIR -25 183 29 1819 181 3 7 chr1 70123809 70124119 -212069545 - AluJo SINE Alu -3 309 1 2064 135 0 7 chr1 70124290 70124586 -212069078 + AluSx SINE Alu 1 294 -18 750 266 87 18 chr1 70125143 70125372 -212068292 - MIR SINE MIR -16 246 2 1164 202 14 9 chr1 70125636 70125859 -212067805 + MER58A DNA MER1_type 1 224 0 2401 93 0 3 chr1 70129600 70129910 -212063754 - AluY SINE Alu -2 309 1 238 111 286 48 chr1 70130036 70130099 -212063565 - L2 LINE L2 0 3313 3236 213 284 0 34 chr1 70130111 70130199 -212063465 - L2 LINE L2 -900 2414 2330 310 252 234 0 chr1 70136304 70136411 -212057253 + MIR SINE MIR 50 181 -81 23 0 0 0 chr1 70137135 70137158 -212056506 + AT_rich Low_complexity Low_complexity 1 23 0 207 347 92 72 chr1 70137564 70137815 -212055849 - L2 LINE L2 0 3272 3017 2040 132 0 35 chr1 70138193 70138512 -212055152 + AluJb SINE Alu 1 308 -4 832 287 162 40 chr1 70139093 70139702 -212053962 - L2 LINE L2 -1 3312 2622 615 256 31 54 chr1 70139704 70139927 -212053737 - L2 LINE L2 -4 3309 3092 * 1175 238 49 25 chr1 70139903 70140227 -212053437 - L2 LINE L2 -668 2646 2315 308 263 268 19 chr1 70140880 70141089 -212052575 - MIR SINE MIR -1 261 1 2376 100 0 3 chr1 70141188 70141498 -212052166 - AluSg SINE Alu -1 309 1 1999 153 0 0 chr1 70141539 70141855 -212051809 - AluSx SINE Alu 0 316 1 474 294 75 7 chr1 70141875 70142021 -212051643 - MIR SINE MIR -58 204 49 347 219 104 0 chr1 70142410 70142506 -212051158 - L1ME1 LINE L1 -20 6146 6041 439 287 142 14 chr1 70143024 70143306 -212050358 + L1MC4a LINE L1 5263 5580 -2228 348 294 174 23 chr1 70143432 70143650 -212050014 + L1MC4a LINE L1 5665 5915 -1893 225 0 0 0 chr1 70144838 70144863 -212048801 + (TG)n Simple_repeat Simple_repeat 2 26 0 529 280 42 0 chr1 70145041 70145209 -212048455 - L1ME LINE L1 -423 5698 5524 278 280 68 42 chr1 70145540 70145658 -212048006 - MIR SINE MIR -141 121 1 1875 139 17 0 chr1 70145754 70146048 -212047616 + AluJo SINE Alu 1 299 -13 420 219 253 18 chr1 70146048 70146376 -212047288 - L1ME4a LINE L1 -86 6035 5631 1413 188 59 42 chr1 70146733 70147020 -212046644 + AluJo SINE Alu 1 292 -20 233 322 74 33 chr1 70148799 70148920 -212044744 + L2 LINE L2 3179 3304 -9 23 0 0 0 chr1 70149511 70149534 -212044130 + AT_rich Low_complexity Low_complexity 1 23 0 1912 171 0 3 chr1 70149552 70149850 -212043814 + AluJo SINE Alu 1 297 -15 754 72 0 36 chr1 70150225 70150336 -212043328 + FLAM_C SINE Alu 29 135 -8 198 118 0 0 chr1 70151550 70151584 -212042080 + (TA)n Simple_repeat Simple_repeat 1 34 0 241 308 75 41 chr1 70156623 70156769 -212036895 + L3 LINE CR1 1249 1399 -178 504 312 64 41 chr1 70156787 70157005 -212036659 - MIR SINE MIR -34 228 6 319 295 21 0 chr1 70157009 70157104 -212036560 + L3 LINE CR1 1416 1512 -65 3219 142 4 4 chr1 70157139 70157674 -212035990 + L1MB3 LINE L1 5642 6176 -7 413 216 248 14 chr1 70157887 70158109 -212035555 - L1ME4a LINE L1 -3 6118 5845 237 135 58 0 chr1 70160145 70160197 -212033467 - LTR66 LTR ERVL -162 448 394 309 155 0 0 chr1 70160205 70160263 -212033401 + (TA)n Simple_repeat Simple_repeat 2 59 0 295 222 262 16 chr1 70160484 70160610 -212033054 - MIR SINE MIR -89 173 17 450 266 22 87 chr1 70161265 70161449 -212032215 - MIR SINE MIR -63 199 28 246 211 0 0 chr1 70162285 70162323 -212031341 + L2 LINE L2 3219 3256 -16 443 213 87 24 chr1 70162765 70162892 -212030772 + MIR SINE MIR 35 169 -93 531 267 53 22 chr1 70162893 70163118 -212030546 - MLT1L LTR MaLR -34 581 350 233 276 0 0 chr1 70163206 70163264 -212030400 - MLT1J LTR MaLR -344 167 110 272 264 14 14 chr1 70164985 70165057 -212028607 + MIR SINE MIR 18 89 -119 284 317 154 72 chr1 70165086 70165417 -212028247 - L2 LINE L2 -19 3253 2896 362 283 137 34 chr1 70165688 70165893 -212027771 + MIR SINE MIR 2 227 -35 22 56 0 0 chr1 70166268 70166304 -212027360 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr1 70166571 70166613 -212027051 + (CA)n Simple_repeat Simple_repeat 2 43 0 186 43 0 0 chr1 70168239 70168262 -212025402 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 216 207 0 35 chr1 70168462 70168520 -212025144 - MIR3 SINE MIR -21 187 132 197 333 35 11 chr1 70168577 70168664 -212025000 - MIR SINE MIR -72 136 48 411 78 0 0 chr1 70168865 70168929 -212024735 + (TG)n Simple_repeat Simple_repeat 2 65 0 21 57 0 0 chr1 70169139 70169174 -212024490 + AT_rich Low_complexity Low_complexity 1 35 0 207 298 21 43 chr1 70170879 70170973 -212022691 - MIR SINE MIR -59 203 112 264 252 37 56 chr1 70173691 70173798 -212019866 - MIR3 SINE MIR -90 118 14 21 0 0 0 chr1 70174700 70174721 -212018943 + AT_rich Low_complexity Low_complexity 1 21 0 421 315 123 0 chr1 70176109 70176271 -212017393 - MIR SINE MIR -72 190 9 285 322 173 15 chr1 70177058 70177260 -212016404 - L2 LINE L2 -220 3052 2819 204 333 24 24 chr1 70177508 70177592 -212016072 - MIR SINE MIR -84 124 41 385 167 135 52 chr1 70177721 70177817 -212015847 + L2 LINE L2 3169 3272 0 252 0 0 0 chr1 70179827 70179855 -212013809 + (TTA)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr1 70181016 70181040 -212012624 + (T)n Simple_repeat Simple_repeat 1 24 0 406 298 0 0 chr1 70182464 70182568 -212011096 - L2 LINE L2 -1 3271 3168 282 56 0 0 chr1 70184232 70184268 -212009396 + (TAA)n Simple_repeat Simple_repeat 2 37 0 301 94 16 16 chr1 70184368 70184432 -212009232 + (CAAAAA)n Simple_repeat Simple_repeat 3 66 0 26 30 0 0 chr1 70185187 70185220 -212008444 + AT_rich Low_complexity Low_complexity 1 33 0 249 139 0 0 chr1 70185759 70185802 -212007862 + (A)n Simple_repeat Simple_repeat 1 43 0 24 67 0 0 chr1 70186260 70186305 -212007359 + AT_rich Low_complexity Low_complexity 1 45 0 212 0 36 0 chr1 70186833 70186861 -212006803 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 197 230 14 0 chr1 70187488 70187562 -212006102 + CT-rich Low_complexity Low_complexity 4 78 0 207 88 0 0 chr1 70188571 70188605 -212005059 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr1 70189543 70189567 -212004097 + AT_rich Low_complexity Low_complexity 1 24 0 276 120 0 0 chr1 70189597 70189647 -212004017 + (T)n Simple_repeat Simple_repeat 1 50 0 320 271 216 38 chr1 70190667 70191216 -212002448 - LTR50 LTR ERVL -126 635 8 774 284 25 0 chr1 70191221 70191418 -212002246 - MIR SINE MIR -59 203 2 425 350 81 42 chr1 70191428 70191625 -212002039 - L2 LINE L2 -2 3270 3082 1475 145 0 36 chr1 70191625 70191873 -212001791 + AluJb SINE Alu 52 290 -22 425 350 81 42 chr1 70191873 70192130 -212001534 - L2 LINE L2 -190 3082 2793 1116 241 106 15 chr1 70192165 70192506 -212001158 - MLT1I LTR MaLR 0 409 38 739 228 92 35 chr1 70192991 70193219 -212000445 + MIR SINE MIR 13 253 -9 373 352 7 14 chr1 70243579 70243721 -211949943 + MIR SINE MIR 5 145 -117 742 154 12 167 chr1 70243752 70243894 -211949770 + MER74A LTR ERVL 356 518 -40 2385 84 0 3 chr1 70243894 70244190 -211949474 - AluSc SINE Alu -14 295 1 742 154 12 167 chr1 70244190 70244229 -211949435 + MER74A LTR ERVL 518 495 -63 2330 108 0 0 chr1 70244229 70244526 -211949138 - AluSx SINE Alu -15 297 1 742 154 12 167 chr1 70244526 70244583 -211949081 + MER74A LTR ERVL 494 558 0 302 275 22 11 chr1 70244585 70244676 -211948988 - L1MC4 LINE L1 -1340 6702 6611 183 222 0 0 chr1 70244680 70244725 -211948939 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 921 235 10 5 chr1 70244732 70244932 -211948732 - MIR SINE MIR -12 250 50 886 166 66 0 chr1 70244935 70245116 -211948548 + MER3 DNA MER1_type 17 209 0 249 180 0 0 chr1 70245073 70245123 -211948541 - MER3 DNA MER1_type -119 90 41 * 316 188 43 0 chr1 70245172 70245241 -211948423 + MER103 DNA DNA 63 134 -32 688 199 108 12 chr1 70245579 70245745 -211947919 + MER5A DNA MER1_type 1 182 -7 289 323 57 16 chr1 70245747 70245871 -211947793 - MIR3 SINE MIR -36 172 44 571 223 43 0 chr1 70246217 70246356 -211947308 + MER103 DNA DNA 21 165 -1 1406 245 58 3 chr1 70246637 70246980 -211946684 + MLT1A1 LTR MaLR 1 362 -3 453 81 0 0 chr1 70247321 70247383 -211946281 + (CA)n Simple_repeat Simple_repeat 1 62 0 443 286 238 0 chr1 70247641 70247809 -211945855 + MIR SINE MIR 46 253 -9 2930 160 8 15 chr1 70248089 70248676 -211944988 + L1MA9 LINE L1 4784 5366 -780 232 111 0 0 chr1 70248677 70248713 -211944951 + LTR56 LTR ERV1 349 384 -61 2062 162 9 19 chr1 70248746 70248878 -211944786 + L1MA9 LINE L1 5354 5486 -826 2200 87 55 0 chr1 70248878 70249167 -211944497 + AluSq SINE Alu 1 305 -8 2062 162 9 19 chr1 70249167 70249454 -211944210 + L1MA9 LINE L1 5486 5769 -543 21 36 0 0 chr1 70249503 70249531 -211944133 + AT_rich Low_complexity Low_complexity 1 28 0 1379 194 56 98 chr1 70249531 70249741 -211943923 + L1MA9 LINE L1 5782 5999 -313 3544 87 24 23 chr1 70249741 70250273 -211943391 + L1PA11 LINE L1 5642 6174 0 1379 194 56 98 chr1 70250273 70250571 -211943093 + L1MA9 LINE L1 5999 6237 -75 441 0 0 0 chr1 70250571 70250620 -211943044 + (TA)n Simple_repeat Simple_repeat 1 49 0 1379 194 56 98 chr1 70250620 70250688 -211942976 + L1MA9 LINE L1 6237 6306 -6 253 281 167 21 chr1 70251046 70251142 -211942522 - MIR3 SINE MIR -30 178 69 1722 236 98 8 chr1 70251142 70251634 -211942030 - MLT1H LTR MaLR 0 549 14 599 262 99 12 chr1 70252184 70252387 -211941277 + LTR16A LTR ERVL 230 457 0 264 245 20 51 chr1 70252387 70252460 -211941204 + LTR67 LTR ERVL 475 544 -13 320 275 99 8 chr1 70252528 70252659 -211941005 - MIR SINE MIR -55 207 65 * 948 216 112 13 chr1 70252644 70252876 -211940788 + MIR SINE MIR 8 262 0 4353 139 15 0 chr1 70254066 70254813 -211938851 - L1MA8 LINE L1 -279 6012 5255 2469 154 11 8 chr1 70254823 70255297 -211938367 + L1MA8 LINE L1 4767 5241 -905 221 299 79 75 chr1 70255305 70255559 -211938105 + L2 LINE L2 2596 2850 -464 378 268 47 31 chr1 70255587 70255714 -211937950 - MIR SINE MIR -6 256 128 955 341 111 9 chr1 70255926 70256378 -211937286 + L2 LINE L2 2807 3304 -9 933 171 6 0 chr1 70256786 70256944 -211936720 + MER2 DNA MER2_type 1 159 -186 1418 135 9 18 chr1 70256962 70257191 -211936473 + MER1B DNA MER1_type 9 235 -62 363 104 0 0 chr1 70257196 70257244 -211936420 + MER1B DNA MER1_type 282 329 0 22 70 0 0 chr1 70257280 70257323 -211936341 + AT_rich Low_complexity Low_complexity 1 43 0 350 242 30 0 chr1 70257639 70257738 -211935926 - MER112 DNA MER1_type 0 260 159 1139 203 73 70 chr1 70257754 70258272 -211935392 - MER39 LTR ERV1 -2 682 2 394 272 245 0 chr1 70258289 70258436 -211935228 + L1MEc LINE L1 1616 1798 -4598 292 254 49 35 chr1 70258449 70258591 -211935073 + L1MEc LINE L1 1848 1991 -4405 726 170 79 12 chr1 70258808 70258973 -211934691 + FRAM SINE Alu 1 40 0 237 239 0 0 chr1 70258997 70259085 -211934579 + L1MEc LINE L1 2209 2296 -4100 659 238 48 48 chr1 70259086 70259376 -211934288 + L1MEc LINE L1 2222 2511 -3704 3198 128 31 41 chr1 70259417 70260071 -211933593 - L1MB7 LINE L1 -215 5969 5323 467 141 0 0 chr1 70260071 70260156 -211933508 - L1MB8 LINE L1 -1 6177 6093 4566 175 39 24 chr1 70260174 70261907 -211931757 - L1MB4 LINE L1 -6 6174 4417 369 322 23 34 chr1 70261907 70262084 -211931580 + L1MEc LINE L1 2602 2776 -3439 1445 249 88 45 chr1 70262086 70262890 -211930774 - L1M4 LINE L1 -1397 4749 3911 287 345 49 58 chr1 70263039 70263265 -211930399 - L2 LINE L2 -195 3077 2854 230 160 20 0 chr1 70263620 70263670 -211929994 + (TA)n Simple_repeat Simple_repeat 2 52 0 264 370 46 75 chr1 70265890 70266195 -211927469 - L2 LINE L2 0 3272 2977 24 0 0 0 chr1 70266269 70266293 -211927371 + AT_rich Low_complexity Low_complexity 1 24 0 671 263 0 6 chr1 70266309 70266465 -211927199 + MIR SINE MIR 21 175 -87 421 282 29 0 chr1 70266609 70266712 -211926952 + L2 LINE L2 3153 3258 -14 24 0 0 0 chr1 70266724 70266748 -211926916 + AT_rich Low_complexity Low_complexity 1 24 0 197 206 0 16 chr1 70266754 70266817 -211926847 + (TATG)n Simple_repeat Simple_repeat 1 62 0 961 261 21 8 chr1 70266822 70267060 -211926604 - MIR SINE MIR -21 241 1 228 320 76 23 chr1 70267063 70267235 -211926429 + L2 LINE L2 2378 2558 -756 259 230 46 35 chr1 70267708 70267795 -211925869 + L2 LINE L2 3223 3310 -3 601 201 16 60 chr1 70267798 70267982 -211925682 - MER104 DNA MER2_type -3 177 2 521 243 169 0 chr1 70268010 70268146 -211925518 + MIR SINE MIR 2 160 -102 220 351 11 0 chr1 70268480 70268574 -211925090 + MIR SINE MIR 167 261 -1 458 246 79 0 chr1 70268697 70268811 -211924853 + L2 LINE L2 3191 3313 0 220 288 15 15 chr1 70269770 70269836 -211923828 - MIR SINE MIR -189 73 8 1685 143 117 0 chr1 70270104 70270369 -211923295 - AluJb SINE Alu -14 298 3 366 228 152 48 chr1 70270516 70270661 -211923003 + MIR SINE MIR 103 262 0 2465 109 8 0 chr1 70270667 70271025 -211922639 - MER46B DNA MER2_type 0 236 1 747 288 52 9 chr1 70271025 70271254 -211922410 - MIR SINE MIR -16 246 8 246 205 36 72 chr1 70272287 70272370 -211921294 - MIR SINE MIR -18 244 165 1237 318 79 40 chr1 70273088 70273673 -211919991 - ERVL LTR ERVL -3055 2599 1969 1608 198 72 19 chr1 70273673 70274047 -211919617 + MSTD LTR MaLR 3 396 0 1237 318 79 40 chr1 70274047 70274308 -211919356 - ERVL LTR ERVL -3685 1969 1720 2327 118 30 0 chr1 70274356 70274694 -211918970 - MER7A DNA MER2_type 0 346 1 832 153 15 22 chr1 70274740 70274877 -211918787 + AluJo SINE Alu 1 136 -176 419 343 20 55 chr1 70274938 70275192 -211918472 - ERVL LTR ERVL -3429 1663 1323 621 288 67 52 chr1 70275327 70275910 -211917754 - L1MEd LINE L1 -5103 1016 477 5298 167 23 2 chr1 70276915 70278038 -211915626 - L1MB8 LINE L1 0 6178 5031 932 228 171 0 chr1 70278036 70278299 -211915365 - L1M4b LINE L1 -5347 1512 1205 * 2845 273 52 39 chr1 70278768 70279726 -211913938 - L1M4b LINE L1 -5635 1224 11 210 269 0 0 chr1 70279767 70279819 -211913845 - L2 LINE L2 0 3313 3262 233 29 29 0 chr1 70280171 70280205 -211913459 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 809 81 0 0 chr1 70280212 70280311 -211913353 - AluSp/q SINE Alu -37 276 178 1554 147 44 12 chr1 70280315 70280566 -211913098 - AluSx SINE Alu -48 264 6 477 307 57 10 chr1 70280581 70280773 -211912891 - MIR SINE MIR -55 207 7 24 0 0 0 chr1 70281431 70281455 -211912209 + AT_rich Low_complexity Low_complexity 1 24 0 2154 112 7 0 chr1 70281686 70281981 -211911683 + AluSx SINE Alu 1 297 -15 673 80 0 0 chr1 70282322 70282410 -211911254 - AluSg/x SINE Alu -4 305 218 15788 190 33 10 chr1 70282457 70284393 -211909271 - L1PB1 LINE L1 0 6867 4976 315 0 0 0 chr1 70284393 70284428 -211909236 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 15788 190 33 10 chr1 70284428 70288583 -211905081 - L1PB1 LINE L1 -1891 4976 681 7402 162 30 20 chr1 70288589 70289375 -211904289 - L1 LINE L1 -1393 6172 5395 1485 150 0 16 chr1 70289375 70289621 -211904043 - AluJb SINE Alu 0 312 71 7402 162 30 20 chr1 70289621 70289893 -211903771 - L1 LINE L1 -2170 5395 5127 802 28 28 0 chr1 70289893 70290001 -211903663 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 7402 162 30 20 chr1 70290001 70290320 -211903344 - L1 LINE L1 -2438 5127 4781 1785 172 17 0 chr1 70290335 70290626 -211903038 - AluJo SINE Alu -16 296 1 23110 121 34 15 chr1 70290626 70294170 -211899494 - L1 LINE L1 -3956 3609 1 2316 119 0 0 chr1 70296032 70296334 -211897330 - AluSx SINE Alu -9 303 2 901 265 11 43 chr1 70296573 70296852 -211896812 - MLT1J LTR MaLR -238 273 4 471 335 85 43 chr1 70297172 70297606 -211896058 - L2 LINE L2 -213 3059 2599 278 152 0 22 chr1 70298620 70298666 -211894998 + MLT1A1 LTR MaLR 310 354 -11 1920 176 8 60 chr1 70299221 70299281 -211894383 - MLT1A1 LTR MaLR -2 465 403 1950 137 23 0 chr1 70299281 70299581 -211894083 + AluSx SINE Alu 1 307 -5 1920 176 8 60 chr1 70299581 70299907 -211893757 - MLT1A1 LTR MaLR -64 403 1 558 228 18 54 chr1 70300093 70300260 -211893404 + L1MC5 LINE L1 7727 7887 -74 669 226 79 0 chr1 70300318 70300482 -211893182 + MIR SINE MIR 85 261 -1 686 259 114 36 chr1 70300482 70300814 -211892850 - MLT1L LTR MaLR -119 496 139 715 287 24 48 chr1 70302089 70302382 -211891282 - L2 LINE L2 -1 3312 3027 1342 221 149 6 chr1 70302402 70302737 -211890927 + MLT1I LTR MaLR 13 395 -14 4176 326 124 18 chr1 70302757 70303237 -211890427 - L2 LINE L2 -282 3031 2603 1481 168 62 117 chr1 70303237 70303623 -211890041 - MLT1A1 LTR MaLR 0 365 1 4176 326 124 18 chr1 70303623 70304730 -211888934 - L2 LINE L2 -710 2603 1614 2158 125 0 0 chr1 70304730 70305017 -211888647 + AluSx SINE Alu 1 287 -25 414 0 0 0 chr1 70305020 70305066 -211888598 + (TAA)n Simple_repeat Simple_repeat 3 48 0 4176 326 124 18 chr1 70305066 70305342 -211888322 - L2 LINE L2 -1700 1613 949 201 291 126 10 chr1 70305370 70305473 -211888191 - MIR SINE MIR -17 245 131 2043 197 81 5 chr1 70305567 70305963 -211887701 - MSTB LTR MaLR 0 426 1 5749 201 8 5 chr1 70305963 70306983 -211886681 - MSTB-int LTR MaLR 0 1651 629 798 118 7 22 chr1 70306967 70307102 -211886562 - MSTB-int LTR MaLR -1518 133 1 * 2349 157 98 3 chr1 70307102 70307491 -211886173 - MSTB LTR MaLR 0 426 1 2881 0 0 0 chr1 70308344 70308648 -211885016 + AluYa5 SINE Alu 1 304 -7 1791 163 3 29 chr1 70308721 70309047 -211884617 + AluJo SINE Alu 1 312 0 242 313 62 25 chr1 70309199 70309279 -211884385 - MIR SINE MIR -120 88 6 417 263 36 62 chr1 70309951 70310295 -211883369 + MLT1L LTR MaLR 1 393 -222 706 193 9 0 chr1 70310561 70310675 -211882989 - FRAM SINE Alu -62 114 1 834 192 148 0 chr1 70311018 70311200 -211882464 + MER58A DNA MER1_type 1 209 -15 2222 116 3 0 chr1 70311596 70311898 -211881766 - AluSg SINE Alu -3 307 5 343 303 98 54 chr1 70311901 70312178 -211881486 + L2 LINE L2 3020 3308 -5 297 183 140 75 chr1 70312464 70312557 -211881107 + MIR SINE MIR 68 167 -41 192 77 0 0 chr1 70314002 70314028 -211879636 + (TA)n Simple_repeat Simple_repeat 1 26 0 27699 58 3 0 chr1 70314073 70318352 -211875312 - L1PA6 LINE L1 0 6154 1866 231 272 96 81 chr1 70318647 70318718 -211874946 + MIR SINE MIR 28 96 -166 2228 124 3 0 chr1 70318718 70319017 -211874647 - AluSx SINE Alu -12 300 1 231 272 96 81 chr1 70319017 70319081 -211874583 + MIR SINE MIR 96 165 -97 2176 116 0 0 chr1 70319180 70319464 -211874200 - AluSx SINE Alu -26 286 3 365 278 56 19 chr1 70319498 70319606 -211874058 - L2 LINE L2 -6 3266 3155 1921 157 3 13 chr1 70320032 70320345 -211873319 + AluJb SINE Alu 1 310 -2 863 248 50 9 chr1 70320451 70320673 -211872991 + MLT1B LTR MaLR 1 231 -159 8746 122 170 23 chr1 70320775 70322355 -211871309 - L1P LINE L1 -4322 1824 13 186 323 32 0 chr1 70322485 70322547 -211871117 - L2 LINE L2 -241 3031 2968 318 296 23 38 chr1 70322653 70322785 -211870879 - MIR SINE MIR -98 164 35 741 264 22 11 chr1 70323595 70323777 -211869887 - MIR SINE MIR -48 214 31 1438 180 57 41 chr1 70325098 70325414 -211868250 + MER33 DNA MER1_type 1 321 -3 23 33 0 0 chr1 70325570 70325600 -211868064 + AT_rich Low_complexity Low_complexity 1 30 0 578 343 279 18 chr1 70325622 70326714 -211866950 + L3 LINE CR1 185 1561 -16 658 181 71 45 chr1 70326902 70327057 -211866607 + MER63A DNA MER1_type 51 209 -1 190 344 86 0 chr1 70327438 70327531 -211866133 - MIR SINE MIR -87 175 75 855 164 0 0 chr1 70327905 70328033 -211865631 + FLAM_A SINE Alu 4 131 -2 515 265 54 0 chr1 70328041 70328207 -211865457 + MIR SINE MIR 77 251 -11 227 216 0 25 chr1 70328252 70328317 -211865347 + L2 LINE L2 3176 3279 -34 312 127 0 0 chr1 70329258 70329313 -211864351 + (TA)n Simple_repeat Simple_repeat 2 56 0 237 294 0 0 chr1 70329657 70329708 -211863956 - L2 LINE L2 -18 3254 3204 2190 135 0 0 chr1 70329749 70330061 -211863603 + AluSq SINE Alu 1 312 -1 199 295 242 0 chr1 70331475 70331570 -211862094 + L2 LINE L2 3134 3251 -21 707 83 33 0 chr1 70332055 70332176 -211861488 + (TC)n Simple_repeat Simple_repeat 2 126 0 327 146 0 0 chr1 70332630 70332685 -211860979 + (TG)n Simple_repeat Simple_repeat 2 56 0 197 192 0 19 chr1 70333349 70333401 -211860263 + CT-rich Low_complexity Low_complexity 2 52 0 229 179 0 0 chr1 70333469 70333508 -211860156 - MLT1B LTR MaLR 0 390 352 6709 90 8 2 chr1 70333515 70334417 -211859247 + L1PA14 LINE L1 5254 6160 -1 1157 147 137 0 chr1 70334449 70334660 -211859004 - MLT1C LTR MaLR -25 442 203 1706 257 126 35 chr1 70334661 70335345 -211858319 - HAL1 LINE L1 -1751 756 11 1490 173 44 0 chr1 70335471 70335743 -211857921 + L1MA9 LINE L1 5825 6108 -204 1319 141 54 45 chr1 70335743 70335985 -211857679 + AluJb SINE Alu 45 288 -24 995 112 56 39 chr1 70335993 70336172 -211857492 + L1MA9 LINE L1 6093 6274 -38 2312 117 0 0 chr1 70336176 70336484 -211857180 + AluSx SINE Alu 1 308 -4 430 326 107 40 chr1 70336673 70337001 -211856663 + L2 LINE L2 2628 2977 -337 409 234 32 40 chr1 70337090 70337214 -211856450 + L2 LINE L2 3187 3309 -4 327 171 85 49 chr1 70337708 70337790 -211855874 + MIR3 SINE MIR 124 208 0 263 271 101 31 chr1 70338163 70338292 -211855372 + MLT1I LTR MaLR 13 150 -259 396 171 16 125 chr1 70338423 70338574 -211855090 + MLT1H LTR MaLR 417 549 0 2260 112 3 0 chr1 70338631 70338935 -211854729 - AluSq SINE Alu -8 305 1 300 114 23 0 chr1 70339046 70339090 -211854574 - MER57A LTR ERV1 -64 339 295 405 259 15 30 chr1 70339109 70339244 -211854420 + MIR SINE MIR 128 260 -2 8479 162 121 91 chr1 70339346 70340467 -211853197 + L1MB3 LINE L1 20 1106 -5313 750 147 0 0 chr1 70340467 70340576 -211853088 + AluSc SINE Alu 129 237 -72 1337 164 29 0 chr1 70340576 70340784 -211852880 + Tigger3(Golem) DNA MER2_type 2825 3038 0 8479 162 121 91 chr1 70340784 70341139 -211852525 + L1MB3 LINE L1 1106 1449 -4970 2330 91 3 0 chr1 70341139 70341437 -211852227 - AluSp SINE Alu -14 299 1 8479 162 121 91 chr1 70341437 70341898 -211851766 + L1MB3 LINE L1 1449 1895 -4524 2885 22 0 0 chr1 70341898 70342216 -211851448 + AluYb8 SINE Alu 1 318 0 8479 162 121 91 chr1 70342216 70343973 -211849691 + L1MB3 LINE L1 1895 3598 -2821 510 80 0 102 chr1 70343973 70344061 -211849603 - MADE1 DNA Mariner -1 79 1 8479 162 121 91 chr1 70344061 70344338 -211849326 + L1MB3 LINE L1 3598 6419 0 22 35 0 0 chr1 70344352 70344381 -211849283 + AT_rich Low_complexity Low_complexity 1 29 0 224 227 0 0 chr1 70344475 70344519 -211849145 + (TG)n Simple_repeat Simple_repeat 2 45 0 337 317 144 0 chr1 70344818 70344922 -211848742 - L2 LINE L2 0 3272 3154 397 259 36 0 chr1 70344931 70345043 -211848621 + MER117 DNA MER1_type 4 119 -78 384 320 77 65 chr1 70345176 70345691 -211847973 - L2 LINE L2 -185 3087 2553 519 198 130 79 chr1 70345883 70346060 -211847604 - MIR SINE MIR -73 189 4 319 329 71 7 chr1 70346412 70346567 -211847097 + MIR3 SINE MIR 16 180 -28 596 250 23 0 chr1 70347788 70347916 -211845748 - L2 LINE L2 0 3272 3142 266 316 113 36 chr1 70348262 70348430 -211845234 + MIR SINE MIR 31 211 -51 216 0 0 0 chr1 70348461 70348485 -211845179 + (TTA)n Simple_repeat Simple_repeat 3 26 0 261 0 0 0 chr1 70348485 70348514 -211845150 + (TAG)n Simple_repeat Simple_repeat 1 29 0 421 283 81 68 chr1 70348727 70349154 -211844510 + L2 LINE L2 2735 3237 -76 436 317 14 0 chr1 70350890 70351032 -211842632 + MIR SINE MIR 114 257 -5 266 189 19 19 chr1 70352121 70352174 -211841490 + MLT1A2 LTR MaLR 159 211 -163 4920 279 58 33 chr1 70352239 70354047 -211839617 + HERV16 LTR ERVL 455 2308 -2688 195 295 21 0 chr1 70354132 70354227 -211839437 - L2 LINE L2 -1214 2100 2004 248 77 26 0 chr1 70354372 70354411 -211839253 + (GGAGA)n Simple_repeat Simple_repeat 1 40 0 404 252 119 44 chr1 70354679 70354973 -211838691 - LTR50 LTR ERVL 0 795 480 437 243 124 60 chr1 70355082 70355266 -211838398 - LTR50 LTR ERVL -588 207 12 1810 167 21 42 chr1 70355266 70355678 -211837986 + MLT1A1 LTR MaLR 1 364 -1 307 269 71 44 chr1 70356154 70356451 -211837213 + L1M4 LINE L1 4304 4608 -1538 348 221 15 0 chr1 70356586 70356654 -211837010 + FLAM SINE Alu 58 126 -7 1960 171 0 0 chr1 70356743 70357042 -211836622 + AluJb SINE Alu 1 299 -13 2194 90 11 0 chr1 70357142 70357465 -211836199 - AluSg1 SINE Alu 0 326 1 202 143 143 0 chr1 70357603 70357645 -211836019 - L2 LINE L2 -8 3264 3217 1882 140 0 3 chr1 70358130 70358415 -211835249 + AluJb SINE Alu 1 284 -28 396 0 0 0 chr1 70358415 70358459 -211835205 + (CA)n Simple_repeat Simple_repeat 2 45 0 296 287 21 53 chr1 70358492 70358586 -211835078 - L3 LINE CR1 -26 1551 1461 190 324 0 0 chr1 70358703 70358777 -211834887 + L2 LINE L2 2456 2529 -785 2088 129 11 0 chr1 70358807 70359094 -211834570 + AluSx SINE Alu 1 290 -22 35 0 0 0 chr1 70359094 70359129 -211834535 + AT_rich Low_complexity Low_complexity 1 35 0 2040 134 3 0 chr1 70359221 70359505 -211834159 + AluSx SINE Alu 1 285 -27 495 0 0 0 chr1 70359506 70359561 -211834103 + (CA)n Simple_repeat Simple_repeat 2 56 0 391 346 80 43 chr1 70359622 70359998 -211833666 + L2 LINE L2 2804 3193 -79 709 293 80 57 chr1 70360063 70360538 -211833126 + MLT1K LTR MaLR 103 588 0 193 224 121 0 chr1 70360607 70360665 -211832999 + L2 LINE L2 3249 3313 0 1694 181 0 40 chr1 70362007 70362332 -211831332 + AluJo SINE Alu 1 312 0 1911 138 12 55 chr1 70362380 70362705 -211830959 + AluJb SINE Alu 1 311 -1 870 191 0 0 chr1 70362705 70362857 -211830807 - L1MA8 LINE L1 -13 6278 6127 286 315 79 0 chr1 70363827 70363954 -211829710 - L2 LINE L2 0 3272 3136 2129 108 0 11 chr1 70364021 70364330 -211829334 + AluSx SINE Alu 1 306 0 326 343 7 7 chr1 70364506 70364652 -211829012 + MIR3 SINE MIR 52 197 -11 1708 153 8 8 chr1 70365463 70365589 -211828075 + AluSx SINE Alu 1 126 -186 2510 68 0 0 chr1 70365589 70365884 -211827780 - AluY SINE Alu -16 295 1 1708 153 8 8 chr1 70365884 70366025 -211827639 + AluSx SINE Alu 125 268 -44 401 282 154 6 chr1 70366159 70366315 -211827349 - MIR SINE MIR -55 207 29 2534 75 0 0 chr1 70366803 70367108 -211826556 - AluY SINE Alu -6 305 1 963 164 0 0 chr1 70367109 70367249 -211826415 + AluSg/x SINE Alu 127 266 -44 207 0 0 0 chr1 70368492 70368515 -211825149 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2185 111 0 0 chr1 70368519 70368798 -211824866 - AluSg SINE Alu -31 279 1 401 380 25 21 chr1 70369211 70369537 -211824127 + ERVL LTR ERVL 376 702 -5062 1566 173 55 42 chr1 70370154 70370328 -211823336 - AluJb SINE Alu -1 311 130 2422 74 3 0 chr1 70370328 70370624 -211823040 - AluY SINE Alu -14 297 1 1566 173 55 42 chr1 70370624 70370756 -211822908 - AluJb SINE Alu -182 130 1 1236 292 59 9 chr1 70371021 70371574 -211822090 + ERVL LTR ERVL 1758 2334 -3320 231 146 0 0 chr1 70372124 70372165 -211821499 + (A)n Simple_repeat Simple_repeat 1 41 0 202 164 36 0 chr1 70372306 70372361 -211821303 + GA-rich Low_complexity Low_complexity 5 61 0 1036 93 0 0 chr1 70372428 70372557 -211821107 + AluSg/x SINE Alu 172 300 -12 24 53 0 0 chr1 70372591 70372629 -211821035 + AT_rich Low_complexity Low_complexity 1 38 0 2616 50 0 0 chr1 70373054 70373356 -211820308 - AluY SINE Alu -9 302 1 207 0 0 0 chr1 70373427 70373450 -211820214 + (CCCTG)n Simple_repeat Simple_repeat 1 23 0 1932 126 65 0 chr1 70374015 70374350 -211819314 - AluSx SINE Alu 0 354 1 280 304 96 9 chr1 70374393 70374508 -211819156 - MIR SINE MIR -117 145 21 1758 142 51 0 chr1 70374893 70375168 -211818496 + AluSx SINE Alu 1 289 -23 385 125 47 0 chr1 70375176 70375240 -211818424 + LTR50 LTR ERVL 729 795 0 1070 272 59 33 chr1 70375438 70375755 -211817909 + HAL1b LINE L1 302 634 -714 1211 153 0 72 chr1 70375755 70375850 -211817814 - MER3 DNA MER1_type 0 209 109 2341 87 3 3 chr1 70375850 70376150 -211817514 + AluSc SINE Alu 2 301 -8 1211 153 0 72 chr1 70376150 70376277 -211817387 - MER3 DNA MER1_type -100 109 3 1070 272 59 33 chr1 70376277 70376385 -211817279 + HAL1b LINE L1 634 738 -610 2397 211 115 78 chr1 70376545 70377618 -211816046 + L1MC5 LINE L1 6411 7543 -418 292 255 65 60 chr1 70377663 70377847 -211815817 + L1ME3A LINE L1 5927 6111 -59 2375 86 0 0 chr1 70377863 70378155 -211815509 + AluSc SINE Alu 1 292 -17 186 43 0 0 chr1 70378239 70378262 -211815402 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 891 184 0 19 chr1 70378265 70378423 -211815241 - FRAM SINE Alu -30 146 1 1058 326 29 14 chr1 70378423 70378868 -211814796 + ERVL LTR ERVL 2445 2896 -2868 758 296 84 53 chr1 70378874 70379360 -211814304 + ERVL LTR ERVL 3002 3502 -2262 1176 318 52 37 chr1 70379526 70380155 -211813509 + ERVL LTR ERVL 3697 4335 -1429 1854 141 0 0 chr1 70380183 70380446 -211813218 + AluJb SINE Alu 25 287 -25 1665 173 3 36 chr1 70380565 70380866 -211812798 + AluJo SINE Alu 1 291 -21 304 330 20 10 chr1 70381025 70381125 -211812539 + L2 LINE L2 3165 3265 -7 212 246 35 0 chr1 70381165 70381222 -211812442 + L2 LINE L2 3255 3313 0 21 71 0 0 chr1 70381225 70381267 -211812397 + AT_rich Low_complexity Low_complexity 1 42 0 2196 143 40 3 chr1 70381331 70381660 -211812004 + MER58B DNA MER1_type 1 341 0 852 126 0 49 chr1 70383377 70383520 -211810144 - FLAM_C SINE Alu -3 140 5 475 307 53 77 chr1 70384629 70385046 -211808618 - L2 LINE L2 -8 3305 2899 706 328 25 0 chr1 70385170 70385414 -211808250 - L2 LINE L2 -646 2668 2419 321 332 25 55 chr1 70385984 70386186 -211807478 - L2 LINE L2 -203 3069 2874 257 0 0 29 chr1 70388043 70388077 -211805587 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 355 342 17 0 chr1 70388271 70388391 -211805273 - MIR3 SINE MIR -48 160 39 2352 104 3 0 chr1 70388955 70389263 -211804401 - AluSp SINE Alu -4 309 1 593 292 43 34 chr1 70389370 70389603 -211804061 - MIR SINE MIR 0 262 28 231 413 13 0 chr1 70389643 70389798 -211803866 + L2 LINE L2 2220 2376 -938 1427 128 32 32 chr1 70389853 70390072 -211803592 + MER20 DNA MER1_type 1 219 0 291 323 79 35 chr1 70390345 70390599 -211803065 - L2 LINE L2 -433 2881 2617 227 322 112 20 chr1 70390649 70390801 -211802863 - MIR SINE MIR -2 260 95 289 242 15 0 chr1 70392757 70392823 -211800841 - L2 LINE L2 -4 3268 3202 540 219 15 0 chr1 70392937 70393050 -211800614 - MER5A DNA MER1_type -71 118 4 246 368 0 0 chr1 70393060 70393166 -211800498 - L2 LINE L2 -47 3266 3161 592 219 119 67 chr1 70393167 70393377 -211800287 - MER2 DNA MER2_type -1 344 124 775 182 8 0 chr1 70393474 70393606 -211800058 - MER2 DNA MER2_type -209 136 4 425 317 155 6 chr1 70393663 70393824 -211799840 - L2 LINE L2 -193 3079 2895 212 235 39 0 chr1 70393812 70393863 -211799801 - L2 LINE L2 -8 3305 3253 * 186 286 71 0 chr1 70394072 70394114 -211799550 - L2 LINE L2 -86 3186 3142 377 156 0 16 chr1 70394158 70394222 -211799442 + L2 LINE L2 3251 3313 0 365 172 0 16 chr1 70394263 70394327 -211799337 + L2 LINE L2 3251 3313 0 368 127 0 0 chr1 70394377 70394432 -211799232 + L2 LINE L2 3259 3313 0 25 0 0 0 chr1 70395539 70395564 -211798100 + AT_rich Low_complexity Low_complexity 1 25 0 338 360 16 8 chr1 70395695 70395820 -211797844 + L3 LINE CR1 985 1110 -467 375 167 148 148 chr1 70395870 70395956 -211797708 - MIR SINE MIR -3 259 174 2416 93 0 3 chr1 70395956 70396266 -211797398 + AluSg SINE Alu 1 309 -1 595 89 13 0 chr1 70396273 70396352 -211797312 - MADE1 DNA Mariner 0 80 1 375 167 148 148 chr1 70396352 70396419 -211797245 - MIR SINE MIR -93 169 98 188 357 56 35 chr1 70396539 70396682 -211796982 + L2 LINE L2 3122 3267 -5 263 309 27 60 chr1 70396756 70396905 -211796759 + L1MC4a LINE L1 5539 5682 -439 203 220 20 0 chr1 70396915 70396965 -211796699 + (TA)n Simple_repeat Simple_repeat 2 52 0 538 263 83 37 chr1 70396968 70397138 -211796526 + L1MC4a LINE L1 5662 5823 -298 340 187 67 0 chr1 70397138 70397213 -211796451 + MER116 DNA Mariner 1 80 0 538 263 83 37 chr1 70397213 70397379 -211796285 + L1MC4a LINE L1 5823 6017 -104 2308 96 0 0 chr1 70397458 70397751 -211795913 + AluSc SINE Alu 1 293 -16 680 229 0 0 chr1 70398464 70398608 -211795056 - L1ME2 LINE L1 -9 6155 6012 21 0 0 0 chr1 70398634 70398655 -211795009 + AT_rich Low_complexity Low_complexity 1 21 0 2029 143 7 0 chr1 70398662 70398962 -211794702 + AluSx SINE Alu 1 302 -10 1479 221 6 21 chr1 70398967 70399298 -211794366 - L1ME2 LINE L1 -152 6014 5689 2259 99 13 0 chr1 70399475 70399779 -211793885 + AluSq SINE Alu 1 308 -5 28 0 0 0 chr1 70401302 70401330 -211792334 + AT_rich Low_complexity Low_complexity 1 28 0 785 228 57 0 chr1 70401552 70401745 -211791919 - MIR SINE MIR -10 252 49 257 286 0 0 chr1 70401943 70401999 -211791665 - L2 LINE L2 0 3272 3217 2308 74 0 52 chr1 70402065 70402375 -211791289 + AluSq SINE Alu 3 296 -17 2246 95 0 58 chr1 70402376 70402703 -211790961 + AluSq SINE Alu 1 308 -5 223 254 0 18 chr1 70402727 70402782 -211790882 + GA-rich Low_complexity Low_complexity 2 55 0 1056 293 78 68 chr1 70402792 70403203 -211790461 - L2 LINE L2 -170 3143 2737 2172 87 10 42 chr1 70403203 70403514 -211790150 - AluSq SINE Alu -12 301 1 1056 293 78 68 chr1 70403514 70403624 -211790040 - L2 LINE L2 -576 2737 2630 1670 205 0 3 chr1 70403624 70403931 -211789733 + AluJb SINE Alu 1 306 -6 1056 293 78 68 chr1 70403931 70404175 -211789489 - L2 LINE L2 -683 2630 2375 769 203 59 20 chr1 70404242 70404395 -211789269 + MLT1E LTR MaLR 317 475 -118 199 319 115 9 chr1 70404784 70404897 -211788767 - L3 LINE CR1 -6 1571 1447 488 288 44 19 chr1 70404902 70405062 -211788602 + MIR SINE MIR 28 191 -71 221 286 63 0 chr1 70406393 70406419 -211787245 + MIR SINE MIR 65 88 -120 2595 82 51 28 chr1 70406419 70406492 -211787172 - THE1B LTR MaLR 0 364 294 2492 60 0 10 chr1 70406492 70406793 -211786871 + AluY SINE Alu 1 298 -13 2595 82 51 28 chr1 70406793 70407075 -211786589 - THE1B LTR MaLR -70 294 1 221 286 63 0 chr1 70407075 70407111 -211786553 + MIR SINE MIR 88 131 -77 448 329 24 6 chr1 70407868 70408032 -211785632 + MIR SINE MIR 56 222 -40 2393 87 3 0 chr1 70408173 70408473 -211785191 - AluSp SINE Alu -12 301 1 423 0 0 0 chr1 70408474 70408521 -211785143 + (TTTTA)n Simple_repeat Simple_repeat 3 49 0 1749 170 3 29 chr1 70408522 70408828 -211784836 - AluJo SINE Alu -14 298 1 310 337 22 0 chr1 70409233 70409322 -211784342 + L2 LINE L2 3182 3272 0 2234 120 0 0 chr1 70409498 70409806 -211783858 - AluSq SINE Alu -5 308 1 593 239 13 19 chr1 70409823 70410219 -211783445 + MLT2E LTR ERVL 1 462 -166 713 207 14 0 chr1 70410419 70410559 -211783105 + MLT2E LTR ERVL 487 628 0 283 276 89 16 chr1 70410769 70410892 -211782772 - MER117 DNA MER1_type -13 184 53 243 167 0 0 chr1 70411064 70411106 -211782558 + L2 LINE L2 3272 3313 0 2261 119 0 6 chr1 70411175 70411487 -211782177 - AluSx SINE Alu -2 310 1 1513 187 82 0 chr1 70412393 70412661 -211781003 + AluJo SINE Alu 5 294 -18 421 262 66 0 chr1 70412798 70412920 -211780744 + L2 LINE L2 3184 3313 0 2354 146 80 62 chr1 70412945 70413433 -211780231 + MLT1D LTR MaLR 9 505 0 587 288 29 78 chr1 70413490 70413595 -211780069 - MIR SINE MIR 0 262 153 1796 176 33 0 chr1 70413595 70413897 -211779767 + AluJb SINE Alu 1 312 0 587 288 29 78 chr1 70413897 70414047 -211779617 - MIR SINE MIR -109 153 20 308 95 0 0 chr1 70414418 70414460 -211779204 + Alu SINE Alu 1 42 -260 2048 130 3 3 chr1 70414460 70414760 -211778904 + AluSx SINE Alu 11 310 -2 350 157 0 14 chr1 70414760 70414830 -211778834 + GA-rich Low_complexity Low_complexity 1 69 0 389 212 112 47 chr1 70414862 70415032 -211778632 - MIR SINE MIR -10 252 72 189 341 111 44 chr1 70415208 70415343 -211778321 - L2 LINE L2 -5 3267 3124 2185 117 0 0 chr1 70415563 70415861 -211777803 + AluSx SINE Alu 1 298 -14 2560 95 17 0 chr1 70415984 70416332 -211777332 + L1PA16 LINE L1 5804 6157 -9 674 177 9 0 chr1 70416351 70416464 -211777200 + MLT1D LTR MaLR 308 421 -84 480 347 74 36 chr1 70416640 70417003 -211776661 - L2 LINE L2 -493 2821 2445 6927 130 15 11 chr1 70417076 70417482 -211776182 + L1MC1 LINE L1 4901 5304 -1029 1654 155 9 73 chr1 70417482 70417616 -211776048 + AluJo SINE Alu 1 142 -170 2423 91 0 0 chr1 70417616 70417923 -211775741 + AluSg1 SINE Alu 1 307 -2 1654 155 9 73 chr1 70417923 70418105 -211775559 + AluJo SINE Alu 142 297 -15 6927 130 15 11 chr1 70418105 70419119 -211774545 + L1MC1 LINE L1 5304 6327 -6 547 216 15 30 chr1 70419211 70419345 -211774319 - MIR SINE MIR -103 159 28 1403 217 16 20 chr1 70419382 70419686 -211773978 - MLT1D LTR MaLR 0 505 203 1688 228 64 7 chr1 70419686 70420138 -211773526 + L1MDa LINE L1 1679 2156 -4384 904 163 0 36 chr1 70420138 70420304 -211773360 - AluSg/x SINE Alu -15 297 138 1870 214 49 14 chr1 70420342 70420829 -211772835 + L1MDa LINE L1 2147 2650 -3890 652 81 0 0 chr1 70420834 70420920 -211772744 - MLT1D LTR MaLR 0 505 420 1027 203 63 10 chr1 70420920 70421225 -211772439 + L1ME3 LINE L1 5753 6318 -16 2097 124 24 0 chr1 70421230 70421521 -211772143 - AluSq SINE Alu -13 300 3 432 297 74 25 chr1 70421653 70421855 -211771809 + MIR SINE MIR 5 216 -46 249 304 148 0 chr1 70421850 70421985 -211771679 - MIR SINE MIR -2 260 106 * 219 279 116 0 chr1 70422204 70422290 -211771374 + MIR SINE MIR 143 238 -24 308 286 71 0 chr1 70422398 70422496 -211771168 - L2 LINE L2 -285 3028 2924 2324 109 3 3 chr1 70422496 70422799 -211770865 + AluSx SINE Alu 1 303 -9 841 158 0 15 chr1 70422819 70422952 -211770712 + FLAM_C SINE Alu 3 133 0 407 231 106 0 chr1 70422984 70423088 -211770576 - L2 LINE L2 -560 2754 2640 2296 71 0 0 chr1 70423189 70423471 -211770193 - AluY SINE Alu -29 282 1 2135 130 0 0 chr1 70424573 70424866 -211768798 + AluSq SINE Alu 5 297 -16 1060 83 0 0 chr1 70425590 70425722 -211767942 - AluSg/x SINE Alu -11 301 170 302 239 120 0 chr1 70425905 70425997 -211767667 + L2 LINE L2 3187 3289 -24 346 322 115 38 chr1 70427593 70427776 -211765888 + MIR3 SINE MIR 3 199 -9 2160 118 23 0 chr1 70428409 70428714 -211764950 + AluSx SINE Alu 1 312 0 574 286 86 92 chr1 70429432 70429911 -211763753 - MLT1K LTR MaLR -27 561 86 857 265 75 57 chr1 70430010 70430342 -211763322 + Charlie2 DNA MER1_type 2 339 -2443 413 149 97 90 chr1 70430380 70430514 -211763150 + Charlie2 DNA MER1_type 2247 2381 -481 1701 133 6 85 chr1 70430566 70430896 -211762768 - AluJb SINE Alu -8 304 1 1218 201 63 9 chr1 70430907 70431226 -211762438 + Charlie2 DNA MER1_type 2483 2818 -44 291 222 139 37 chr1 70431284 70431392 -211762272 - L2 LINE L2 -8 3305 3187 185 302 57 0 chr1 70431406 70431459 -211762205 - L2 LINE L2 -8 3264 3209 1543 161 4 34 chr1 70431536 70431803 -211761861 + AluJo SINE Alu 23 281 -31 1848 151 3 29 chr1 70432170 70432482 -211761182 + AluSx SINE Alu 5 308 -4 940 101 0 0 chr1 70432607 70432726 -211760938 + FRAM SINE Alu 40 158 -18 802 120 45 30 chr1 70432853 70432986 -211760678 + AluJo SINE Alu 1 135 -177 997 204 49 9 chr1 70432986 70433212 -211760452 + L1MB4 LINE L1 5934 6168 -12 2138 101 0 4 chr1 70434234 70434512 -211759152 + AluSc SINE Alu 1 277 -32 2106 119 27 0 chr1 70434554 70434847 -211758817 + AluSx SINE Alu 1 301 -11 1632 176 0 30 chr1 70435148 70435444 -211758220 - AluJb SINE Alu -5 307 21 1417 206 112 3 chr1 70435670 70435966 -211757698 + MLT1A1 LTR MaLR 1 328 -37 2281 121 0 0 chr1 70435966 70436273 -211757391 + AluSx SINE Alu 1 307 -5 254 149 50 0 chr1 70436292 70436342 -211757322 + MLT1A2 LTR MaLR 331 374 0 2317 109 3 0 chr1 70437005 70437308 -211756356 + AluSq SINE Alu 1 304 -9 2138 107 20 10 chr1 70437425 70437724 -211755940 + AluSp SINE Alu 1 302 -11 339 25 0 0 chr1 70437724 70437764 -211755900 + (TA)n Simple_repeat Simple_repeat 2 41 0 622 159 8 15 chr1 70438223 70438355 -211755309 + GA-rich Low_complexity Low_complexity 3 133 0 604 152 0 0 chr1 70438406 70438485 -211755179 + AluJ/FLAM SINE Alu 2 80 -232 1770 158 21 3 chr1 70438752 70439036 -211754628 + AluJb SINE Alu 1 289 -23 239 226 0 0 chr1 70439935 70439988 -211753676 + MLT1K LTR MaLR 517 569 -19 334 252 103 0 chr1 70440149 70440256 -211753408 - MER103 DNA DNA -46 120 3 552 211 164 12 chr1 70441629 70441800 -211751864 + L2 LINE L2 3113 3309 -4 2258 108 3 13 chr1 70442048 70442364 -211751300 + AluSq SINE Alu 1 313 0 239 233 0 50 chr1 70442493 70442553 -211751111 + L2 LINE L2 3029 3085 -228 854 166 41 7 chr1 70442564 70442709 -211750955 - AluJo SINE Alu -162 150 1 305 194 0 14 chr1 70443092 70443164 -211750500 + CT-rich Low_complexity Low_complexity 2 72 0 762 174 0 0 chr1 70443186 70443295 -211750369 - FLAM_C SINE Alu -33 110 2 232 135 19 0 chr1 70443302 70443354 -211750310 - L1MA10 LINE L1 0 6334 6282 647 240 14 63 chr1 70443362 70443583 -211750081 - L1ME1 LINE L1 -17 6149 5940 369 231 0 39 chr1 70443856 70443960 -211749704 - L1ME1 LINE L1 -298 5823 5724 290 275 93 72 chr1 70443965 70444069 -211749595 - L2 LINE L2 -4 3309 3198 2334 93 7 0 chr1 70444069 70444369 -211749295 + AluSp SINE Alu 1 302 -11 290 275 93 72 chr1 70444369 70444457 -211749207 - L2 LINE L2 -115 3198 3113 687 213 0 57 chr1 70444534 70444675 -211748989 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr1 70444820 70444852 -211748812 + AT_rich Low_complexity Low_complexity 1 32 0 1866 152 0 13 chr1 70444852 70445167 -211748497 + AluJb SINE Alu 1 311 -1 254 276 209 0 chr1 70445354 70445488 -211748176 + L2 LINE L2 2934 3095 -177 432 320 96 0 chr1 70445852 70446008 -211747656 + MIR SINE MIR 2 172 -90 246 244 70 52 chr1 70446029 70446144 -211747520 + MIR SINE MIR 95 211 -51 180 313 0 0 chr1 70446410 70446458 -211747206 - L2 LINE L2 -3 3269 3222 1120 289 5 36 chr1 70446912 70447296 -211746368 - L2 LINE L2 0 3313 2942 396 0 0 0 chr1 70447354 70447398 -211746266 + (TG)n Simple_repeat Simple_repeat 2 45 0 254 280 153 83 chr1 70447530 70447719 -211745945 - L2 LINE L2 -649 2665 2446 2305 88 3 0 chr1 70447719 70448014 -211745650 + AluSx SINE Alu 4 299 -13 254 280 153 83 chr1 70448014 70448124 -211745540 - L2 LINE L2 -868 2446 2345 22 0 0 0 chr1 70448125 70448147 -211745517 + AT_rich Low_complexity Low_complexity 1 22 0 2177 127 3 0 chr1 70448175 70448475 -211745189 - AluSx SINE Alu -11 301 1 2229 123 7 0 chr1 70448631 70448941 -211744723 + AluSx SINE Alu 1 312 0 47 78 0 0 chr1 70449033 70449136 -211744528 + AT_rich Low_complexity Low_complexity 1 103 0 188 23 47 47 chr1 70449164 70449207 -211744457 + (TA)n Simple_repeat Simple_repeat 1 43 0 2237 134 0 0 chr1 70449218 70449517 -211744147 - AluSx SINE Alu -13 299 1 189 0 0 0 chr1 70449523 70449544 -211744120 + (TA)n Simple_repeat Simple_repeat 2 22 0 2308 98 3 0 chr1 70449547 70449843 -211743821 - AluSq SINE Alu -16 297 1 1066 75 8 0 chr1 70449843 70449977 -211743687 - AluSq/x SINE Alu -178 135 1 2035 135 3 0 chr1 70450198 70450518 -211743146 - AluSq SINE Alu 0 313 1 791 146 0 46 chr1 70450571 70450701 -211742963 + AluJb SINE Alu 2 125 -187 848 229 72 42 chr1 70450961 70450995 -211742669 + MLT1J2 LTR MaLR 1 33 -417 2069 97 4 22 chr1 70450995 70451273 -211742391 - AluSx SINE Alu -39 273 1 848 229 72 42 chr1 70451273 70451474 -211742190 + MLT1J2 LTR MaLR 33 243 -207 1581 156 26 7 chr1 70451987 70452256 -211741408 - AluJb SINE Alu -9 303 30 381 247 24 12 chr1 70452365 70452450 -211741214 - MLT1J2 LTR MaLR -330 120 35 1813 86 6 169 chr1 70452451 70452821 -211740843 + AluSp SINE Alu 2 316 0 1963 156 0 0 chr1 70452931 70453233 -211740431 + AluJb SINE Alu 1 302 -10 1446 169 73 11 chr1 70454036 70454308 -211739356 - AluJo SINE Alu -23 289 1 563 261 67 0 chr1 70454386 70454505 -211739159 - FLAM_A SINE Alu -6 127 1 399 217 118 59 chr1 70454635 70454787 -211738877 + MER46C DNA MER2_type 2 162 -176 23 0 0 0 chr1 70454810 70454833 -211738831 + AT_rich Low_complexity Low_complexity 1 23 0 1672 177 7 10 chr1 70454840 70455140 -211738524 + AluJb SINE Alu 1 299 -13 1667 167 59 3 chr1 70456118 70456405 -211737259 + AluJb SINE Alu 1 303 -9 222 37 0 0 chr1 70456407 70456434 -211737230 + (TA)n Simple_repeat Simple_repeat 1 27 0 435 83 0 0 chr1 70456434 70456494 -211737170 + (CA)n Simple_repeat Simple_repeat 2 61 0 1948 124 29 26 chr1 70457006 70457312 -211736352 + AluSq SINE Alu 1 307 -6 1613 126 96 4 chr1 70457337 70457598 -211736066 + AluJb SINE Alu 12 296 -16 753 151 59 0 chr1 70457864 70457983 -211735681 - FLAM_C SINE Alu -10 133 8 1249 171 43 5 chr1 70458010 70458221 -211735443 + MER20 DNA MER1_type 1 219 0 715 242 40 54 chr1 70458230 70458377 -211735287 - Charlie2 DNA MER1_type -1 2861 2718 1858 169 7 0 chr1 70458377 70458667 -211734997 - AluSx SINE Alu -20 292 1 715 242 40 54 chr1 70458667 70458816 -211734848 - Charlie2 DNA MER1_type -144 2718 2569 1885 132 35 7 chr1 70458854 70459142 -211734522 + AluSx SINE Alu 1 296 -16 1862 157 6 19 chr1 70459154 70459467 -211734197 + AluSx SINE Alu 1 309 -3 2906 10 0 0 chr1 70459838 70460152 -211733512 - AluYb8 SINE Alu -4 314 1 2113 102 3 0 chr1 70460222 70460505 -211733159 + AluSg SINE Alu 5 288 -22 1688 156 67 3 chr1 70460516 70460799 -211732865 - AluJb SINE Alu -11 301 1 301 296 96 9 chr1 70461134 70461249 -211732415 + MIR SINE MIR 20 144 -118 1917 127 65 0 chr1 70461293 70461627 -211732037 + AluSx SINE Alu 1 353 0 2599 55 0 13 chr1 70461702 70462014 -211731650 - AluY SINE Alu -3 308 1 1372 150 10 0 chr1 70462014 70462221 -211731443 + AluJo SINE Alu 67 275 -37 465 190 4 24 chr1 70462251 70462503 -211731161 + (TA)n Simple_repeat Simple_repeat 1 247 0 2265 66 0 63 chr1 70462976 70463293 -211730371 + AluY SINE Alu 1 297 -14 897 174 0 36 chr1 70463473 70463640 -211730024 - FRAM SINE Alu -8 168 8 1106 113 124 16 chr1 70463751 70463945 -211729719 + AluJb SINE Alu 87 301 -11 1452 181 103 3 chr1 70463946 70464228 -211729436 + AluJb SINE Alu 2 311 -1 254 149 21 0 chr1 70464342 70464389 -211729275 + LTR54 LTR ERV1 402 449 -61 1144 239 148 39 chr1 70464400 70464962 -211728702 + L1MC4 LINE L1 7199 7823 -214 1726 141 67 17 chr1 70464962 70465259 -211728405 - AluJb SINE Alu 0 312 1 216 0 0 0 chr1 70465319 70465343 -211728321 + (GA)n Simple_repeat Simple_repeat 2 25 0 341 126 0 228 chr1 70465344 70465397 -211728267 + L1MC4 LINE L1 7945 7954 -88 2279 101 3 10 chr1 70465397 70465704 -211727960 - AluSp SINE Alu -8 305 1 341 126 0 228 chr1 70465704 70465777 -211727887 + L1MC4 LINE L1 7954 8042 0 724 203 88 32 chr1 70465799 70466016 -211727648 + L1ME3A LINE L1 5942 6170 0 2230 113 0 0 chr1 70466148 70466449 -211727215 - AluSx SINE Alu -9 303 3 285 221 96 39 chr1 70466461 70466565 -211727099 + L2 LINE L2 3203 3312 -1 1826 154 6 38 chr1 70466848 70467166 -211726498 + AluJb SINE Alu 1 308 -4 2387 110 0 0 chr1 70467169 70467479 -211726185 + AluSx SINE Alu 1 310 -2 762 174 0 43 chr1 70467738 70467876 -211725788 + FLAM_C SINE Alu 2 133 0 1626 151 0 62 chr1 70467895 70468187 -211725477 + AluJb SINE Alu 1 274 -38 2158 107 0 0 chr1 70468296 70468576 -211725088 - AluSg SINE Alu -30 280 1 21 36 0 0 chr1 70469572 70469600 -211724064 + AT_rich Low_complexity Low_complexity 1 28 0 528 133 0 44 chr1 70469870 70469960 -211723704 + AluJo SINE Alu 49 134 -178 1787 112 0 12 chr1 70470105 70470364 -211723300 + AluSx SINE Alu 49 304 -8 195 338 52 13 chr1 70470523 70470600 -211723064 + L2 LINE L2 3191 3270 -2 731 234 27 11 chr1 70471935 70472119 -211721545 - MER5A DNA MER1_type -2 187 1 1984 129 7 10 chr1 70472143 70472437 -211721227 - AluSx SINE Alu -19 293 1 2134 106 7 0 chr1 70472511 70472804 -211720860 - AluSq SINE Alu -18 295 1 2003 112 7 7 chr1 70472881 70473166 -211720498 - AluSp SINE Alu -28 285 1 2332 70 3 3 chr1 70473170 70473456 -211720208 - AluSg SINE Alu -24 286 1 252 225 28 28 chr1 70473568 70473639 -211720025 + CT-rich Low_complexity Low_complexity 1 71 0 442 174 0 0 chr1 70473871 70473940 -211719724 + AluJ/FLAM SINE Alu 2 70 -242 1621 118 0 17 chr1 70474047 70474284 -211719380 + AluSc SINE Alu 1 233 -76 2010 113 26 0 chr1 70474309 70474611 -211719053 + AluSq SINE Alu 1 310 -3 2199 91 0 58 chr1 70474635 70474964 -211718700 + AluSg SINE Alu 1 310 0 2205 101 7 0 chr1 70475083 70475381 -211718283 + AluSp SINE Alu 1 300 -13 1112 180 131 85 chr1 70475383 70475564 -211718100 - LTR54B LTR ERV1 -2 496 325 1344 169 95 26 chr1 70475564 70475837 -211717827 + AluJo SINE Alu 1 292 -20 1112 180 131 85 chr1 70475837 70476127 -211717537 - LTR54B LTR ERV1 -173 325 3 7503 54 5 0 chr1 70476238 70477115 -211716549 + L1PA7 LINE L1 5264 6144 -10 788 124 0 0 chr1 70477133 70477246 -211716418 + AluSg/x SINE Alu 197 309 -3 181 225 0 0 chr1 70477257 70477297 -211716367 + L2 LINE L2 3273 3312 -1 35 24 0 0 chr1 70477474 70477516 -211716148 + AT_rich Low_complexity Low_complexity 1 42 0 1834 162 7 7 chr1 70477525 70477821 -211715843 - AluJo SINE Alu -15 297 2 180 0 0 0 chr1 70478011 70478031 -211715633 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1779 88 50 0 chr1 70478033 70478272 -211715392 - AluSq SINE Alu -32 281 31 1253 112 0 6 chr1 70478922 70479092 -211714572 - AluSg/x SINE Alu -11 301 133 189 94 0 0 chr1 70479092 70479124 -211714540 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1958 123 21 0 chr1 70479112 70479397 -211714267 - AluSg SINE Alu -19 291 1 183 139 0 0 chr1 70479710 70479746 -211713918 + (A)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr1 70480029 70480051 -211713613 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 70480059 70480081 -211713583 + AT_rich Low_complexity Low_complexity 1 22 0 * 767 194 0 0 chr1 70480076 70480205 -211713459 - AluJb SINE Alu -22 290 162 2114 120 43 0 chr1 70480442 70480741 -211712923 - AluSq SINE Alu -1 312 1 428 280 148 0 chr1 70480741 70480930 -211712734 - MIR SINE MIR -15 247 31 573 184 20 0 chr1 70480987 70481085 -211712579 + AluSp/q SINE Alu 190 289 -24 2002 118 7 0 chr1 70481238 70481541 -211712123 + AluSx SINE Alu 1 305 0 438 211 10 88 chr1 70481581 70481725 -211711939 + MER65A LTR ERV1 267 421 -24 2666 109 55 149 chr1 70481725 70481933 -211711731 + LTR64 LTR ERVK 1 227 -331 2215 113 0 10 chr1 70481933 70482235 -211711429 + AluSx SINE Alu 5 303 -9 2666 109 55 149 chr1 70482235 70482532 -211711132 + LTR64 LTR ERVK 227 550 -8 2074 115 19 53 chr1 70482532 70482855 -211710809 - AluSx SINE Alu 0 312 1 2666 109 55 149 chr1 70482855 70482892 -211710772 + LTR64 LTR ERVK 550 483 -75 1357 173 55 33 chr1 70482892 70483164 -211710500 - AluJo SINE Alu -30 282 5 2666 109 55 149 chr1 70483164 70483235 -211710429 + LTR64 LTR ERVK 482 558 0 438 211 10 88 chr1 70483235 70483284 -211710380 + MER65A LTR ERV1 421 445 0 817 153 0 0 chr1 70483343 70483461 -211710203 + FLAM_C SINE Alu 1 118 -15 2119 120 0 0 chr1 70483481 70483810 -211709854 - AluSg SINE Alu 0 329 1 25 51 0 0 chr1 70483870 70483909 -211709755 + AT_rich Low_complexity Low_complexity 1 39 0 1664 156 0 60 chr1 70483951 70484253 -211709411 + AluJo SINE Alu 1 284 -28 2071 129 20 0 chr1 70484256 70484558 -211709106 - AluSx SINE Alu -4 308 1 2389 82 20 3 chr1 70484895 70485199 -211708465 + AluSq SINE Alu 1 309 -4 1873 109 69 7 chr1 70485349 70485625 -211708039 + AluSq SINE Alu 1 293 -20 955 162 47 0 chr1 70485627 70485775 -211707889 + AluJo/FRAM SINE Alu 136 290 -22 25 31 0 0 chr1 70485775 70485807 -211707857 + AT_rich Low_complexity Low_complexity 1 32 0 1178 184 111 62 chr1 70485812 70486100 -211707564 + AluJo SINE Alu 1 302 0 865 142 11 74 chr1 70486170 70486224 -211707440 - L1PA15 LINE L1 0 6165 6109 2216 96 10 3 chr1 70486224 70486526 -211707138 + AluSg SINE Alu 1 304 -6 865 142 11 74 chr1 70486526 70486647 -211707017 - L1PA15 LINE L1 -56 6109 6001 593 138 0 11 chr1 70486957 70487074 -211706590 - FLAM_A SINE Alu 0 138 23 204 67 0 0 chr1 70487109 70487139 -211706525 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1606 102 18 44 chr1 70487167 70487441 -211706223 - AluSx SINE Alu -45 267 1 29 84 0 0 chr1 70488351 70488422 -211705242 + GC_rich Low_complexity Low_complexity 1 71 0 24 85 0 0 chr1 70488845 70488904 -211704760 + GC_rich Low_complexity Low_complexity 1 59 0 1276 159 140 26 chr1 70490032 70490303 -211703361 + AluJb SINE Alu 1 302 0 189 0 0 0 chr1 70490315 70490336 -211703328 + (CTTAT)n Simple_repeat Simple_repeat 2 22 0 2534 178 189 42 chr1 70490618 70491257 -211702407 - MER21A LTR ERV1 -19 912 180 2194 113 3 14 chr1 70491259 70491572 -211702092 - AluSx SINE Alu 0 312 1 186 43 0 0 chr1 70491576 70491599 -211702065 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 2214 109 0 0 chr1 70491608 70491901 -211701763 - AluSx SINE Alu -18 294 2 1609 140 33 62 chr1 70491906 70492240 -211701424 - AluSx SINE Alu 0 312 1 687 148 9 0 chr1 70492251 70492366 -211701298 - FLAM_C SINE Alu -17 126 11 330 200 0 0 chr1 70492375 70492430 -211701234 - MER39 LTR ERV1 -394 313 259 * 1018 155 14 68 chr1 70492407 70492614 -211701050 - MER21A LTR ERV1 -735 196 1 391 169 131 31 chr1 70492722 70492852 -211700812 - L1ME4a LINE L1 -5 6116 5974 546 209 40 20 chr1 70493779 70493927 -211699737 + MER33 DNA MER1_type 14 164 -160 261 174 0 0 chr1 70493917 70493963 -211699701 - AluSg SINE Alu -8 293 248 * 1665 88 0 0 chr1 70493963 70494168 -211699496 - AluSg SINE Alu -96 214 10 2319 91 3 3 chr1 70494245 70494554 -211699110 - AluSx SINE Alu -3 309 1 640 192 55 7 chr1 70494711 70494857 -211698807 - AluJb SINE Alu -64 248 96 319 304 65 48 chr1 70494886 70494979 -211698685 - MIR SINE MIR 0 262 163 1855 89 43 98 chr1 70494979 70495304 -211698360 - AluSq SINE Alu -6 307 1 319 304 65 48 chr1 70495304 70495378 -211698286 - MIR SINE MIR -99 163 92 336 240 14 132 chr1 70495520 70495681 -211697983 + L1ME3A LINE L1 5711 5833 -337 1783 136 7 11 chr1 70495681 70495954 -211697710 - AluJb SINE Alu -18 294 23 336 240 14 132 chr1 70495954 70496050 -211697614 + L1ME3A LINE L1 5833 5939 -231 2010 108 10 23 chr1 70496434 70496740 -211696924 - AluSp SINE Alu -11 302 1 2199 117 3 7 chr1 70496991 70497298 -211696366 - AluSx SINE Alu -3 309 4 2055 157 0 0 chr1 70497544 70497856 -211695808 + AluSx SINE Alu 1 312 0 2200 129 3 0 chr1 70497857 70498160 -211695504 + AluSp SINE Alu 1 304 -9 2164 112 0 43 chr1 70498306 70498629 -211695035 - AluSg SINE Alu -1 309 1 21 0 0 0 chr1 70498637 70498658 -211695006 + AT_rich Low_complexity Low_complexity 1 21 0 2374 82 10 3 chr1 70499520 70499814 -211693850 - AluSx SINE Alu -16 296 1 204 102 34 51 chr1 70499861 70499920 -211693744 + A-rich Low_complexity Low_complexity 4 61 0 1268 168 8 68 chr1 70500414 70500664 -211693000 - AluJo SINE Alu -77 235 1 715 197 0 0 chr1 70500792 70500919 -211692745 + FLAM_A SINE Alu 12 138 -4 2289 75 0 33 chr1 70501020 70501326 -211692338 + AluY SINE Alu 1 296 -15 542 180 124 31 chr1 70501356 70501517 -211692147 + Charlie7 DNA MER1_type 2436 2611 -1 185 314 33 41 chr1 70501532 70501653 -211692011 + L2 LINE L2 2687 2806 -508 661 228 131 15 chr1 70501674 70501809 -211691855 - MER5C DNA MER1_type 0 324 206 2172 87 49 0 chr1 70501809 70502095 -211691569 - AluSq SINE Alu -13 300 1 661 228 131 15 chr1 70502095 70502218 -211691446 - MER5C DNA MER1_type -118 206 36 1113 161 0 21 chr1 70502335 70502527 -211691137 + MER5A DNA MER1_type 1 188 -1 2069 134 19 10 chr1 70502566 70502873 -211690791 - AluSg SINE Alu 0 310 1 1743 171 30 3 chr1 70503076 70503374 -211690290 - AluJo SINE Alu -6 306 1 1792 193 0 3 chr1 70503377 70503688 -211689976 - AluJb SINE Alu -2 310 1 22 0 0 0 chr1 70503694 70503716 -211689948 + AT_rich Low_complexity Low_complexity 1 22 0 700 195 0 8 chr1 70503825 70503953 -211689711 - FLAM_A SINE Alu -6 127 1 2258 112 7 0 chr1 70504346 70504649 -211689015 - AluSq SINE Alu -8 305 1 636 150 83 25 chr1 70504767 70504887 -211688777 - FRAM SINE Alu -9 167 41 1427 70 43 0 chr1 70505134 70505321 -211688343 - MER30 DNA MER1_type -35 195 1 2159 119 7 0 chr1 70505412 70505707 -211687957 - AluSx SINE Alu -13 299 3 230 294 76 11 chr1 70505742 70505834 -211687830 - L1ME LINE L1 -394 5727 5630 2167 124 16 0 chr1 70506606 70506913 -211686751 - AluSx SINE Alu 0 312 1 1888 158 17 0 chr1 70506978 70507275 -211686389 - AluJb SINE Alu -10 302 1 379 272 19 10 chr1 70507277 70507380 -211686284 - L1ME2 LINE L1 -58 6106 6003 1500 246 123 27 chr1 70507380 70507684 -211685980 - MER34 LTR ERV1 0 542 172 2060 134 0 13 chr1 70507684 70507989 -211685675 - AluJo SINE Alu -11 301 1 1500 246 123 27 chr1 70507989 70508171 -211685493 - MER34 LTR ERV1 -370 172 9 2057 208 58 21 chr1 70508216 70508751 -211684913 - L1ME2 LINE L1 -199 5965 5411 26 0 0 0 chr1 70508936 70508962 -211684702 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 70509205 70509229 -211684435 + AT_rich Low_complexity Low_complexity 1 24 0 1132 145 0 6 chr1 70509385 70509551 -211684113 + FRAM SINE Alu 1 163 -13 1689 184 10 3 chr1 70509664 70509957 -211683707 - AluJo SINE Alu -15 297 3 1022 73 0 0 chr1 70510036 70510159 -211683505 - AluY SINE Alu -188 123 1 1919 156 23 7 chr1 70511074 70511381 -211682283 - AluJo SINE Alu 0 312 1 1322 147 5 5 chr1 70511386 70511590 -211682074 - AluSg/x SINE Alu -9 301 98 570 253 99 6 chr1 70511710 70511892 -211681772 + MIR SINE MIR 63 261 -1 23 33 0 0 chr1 70512706 70512736 -211680928 + AT_rich Low_complexity Low_complexity 1 30 0 1929 124 0 0 chr1 70512815 70513080 -211680584 + AluSq SINE Alu 1 265 -48 27 29 0 0 chr1 70513168 70513202 -211680462 + AT_rich Low_complexity Low_complexity 1 34 0 1527 181 24 24 chr1 70513271 70513563 -211680101 + AluJo SINE Alu 9 300 -12 2341 93 13 0 chr1 70513673 70513975 -211679689 - AluSg SINE Alu -4 306 1 2504 42 0 3 chr1 70514192 70514506 -211679158 + AluY SINE Alu 1 313 0 2209 121 0 0 chr1 70514622 70514927 -211678737 + AluJb SINE Alu 1 305 -7 404 340 33 7 chr1 70515599 70515752 -211677912 - MIR SINE MIR -85 177 21 243 333 82 29 chr1 70515767 70515938 -211677726 - L3 LINE CR1 -493 1084 905 448 317 62 0 chr1 70516403 70516564 -211677100 + MIR SINE MIR 86 256 -6 1504 168 119 8 chr1 70516664 70516932 -211676732 + AluJb SINE Alu 1 298 -4 23 0 0 0 chr1 70517298 70517321 -211676343 + AT_rich Low_complexity Low_complexity 1 23 0 2317 101 0 7 chr1 70517721 70518027 -211675637 - AluSq SINE Alu -9 304 1 349 349 115 5 chr1 70518722 70518940 -211674724 + MIR SINE MIR 20 261 -1 2175 100 3 10 chr1 70519037 70519327 -211674337 - AluSg SINE Alu -22 288 1 1625 154 22 58 chr1 70519395 70519510 -211674154 + AluJo SINE Alu 5 123 -189 2369 107 10 0 chr1 70519510 70519819 -211673845 + AluSx SINE Alu 1 312 0 1625 154 22 58 chr1 70519819 70519844 -211673820 + AluJo SINE Alu 123 147 -165 2558 72 0 0 chr1 70519844 70520149 -211673515 + AluY SINE Alu 1 305 -6 1625 154 22 58 chr1 70520149 70520319 -211673345 + AluJo SINE Alu 147 305 -7 197 204 23 0 chr1 70520857 70520901 -211672763 - L2 LINE L2 -13 3259 3215 191 262 56 19 chr1 70520984 70521091 -211672573 + L2 LINE L2 3159 3269 -44 2431 203 24 108 chr1 70522217 70522736 -211670928 + Charlie1a DNA MER1_type 1 435 -2326 2446 78 0 0 chr1 70522736 70523032 -211670632 - AluY SINE Alu -15 296 1 2431 203 24 108 chr1 70523032 70523290 -211670374 + Charlie1a DNA MER1_type 435 713 -742 1522 128 139 15 chr1 70523290 70523556 -211670108 + AluJb SINE Alu 1 299 -13 1022 73 0 0 chr1 70524018 70524141 -211669523 + AluY SINE Alu 1 123 -188 1485 175 42 11 chr1 70524220 70524506 -211669158 + AluJo SINE Alu 3 297 -15 1141 144 0 6 chr1 70524619 70524786 -211668878 - FRAM SINE Alu -12 164 1 24 0 0 0 chr1 70524942 70524966 -211668698 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 70525209 70525235 -211668429 + AT_rich Low_complexity Low_complexity 1 26 0 2057 208 58 21 chr1 70525420 70525955 -211667709 + L1ME2 LINE L1 5411 5965 -199 1500 246 123 27 chr1 70526000 70526182 -211667482 + MER34 LTR ERV1 9 172 -370 2054 134 0 13 chr1 70526182 70526487 -211667177 + AluJo SINE Alu 1 301 -11 1500 246 123 27 chr1 70526487 70526791 -211666873 + MER34 LTR ERV1 172 542 0 379 272 19 10 chr1 70526791 70526894 -211666770 + L1ME2 LINE L1 6003 6106 -58 1888 158 17 0 chr1 70526896 70527193 -211666471 + AluJb SINE Alu 1 302 -10 2168 114 16 7 chr1 70527258 70527566 -211666098 + AluSx SINE Alu 1 311 -1 1089 170 26 0 chr1 70527567 70527590 -211666074 + AluJo SINE Alu 107 128 -184 2558 72 0 0 chr1 70527590 70527895 -211665769 + AluY SINE Alu 1 305 -6 1089 170 26 0 chr1 70527895 70528065 -211665599 + AluJo SINE Alu 128 305 -7 197 204 23 0 chr1 70528603 70528647 -211665017 - L2 LINE L2 -13 3259 3215 191 262 56 19 chr1 70528730 70528837 -211664827 + L2 LINE L2 3159 3269 -44 4607 175 46 122 chr1 70529963 70530481 -211663183 + Charlie1a DNA MER1_type 1 557 -2204 2446 78 0 0 chr1 70530481 70530777 -211662887 - AluY SINE Alu -15 296 1 4607 175 46 122 chr1 70530777 70531035 -211662629 + Charlie1a DNA MER1_type 557 833 -1928 1595 132 129 14 chr1 70531035 70531315 -211662349 + AluJb SINE Alu 1 312 0 4607 175 46 122 chr1 70531315 70531462 -211662202 + Charlie1a DNA MER1_type 833 990 -1771 1877 142 9 28 chr1 70531462 70531640 -211662024 - AluJo SINE Alu 0 312 141 1998 152 0 0 chr1 70531640 70531942 -211661722 - AluJb SINE Alu -7 305 4 1877 142 9 28 chr1 70531942 70532081 -211661583 - AluJo SINE Alu -171 141 1 4607 175 46 122 chr1 70532081 70532484 -211661180 + Charlie1a DNA MER1_type 990 1211 -1550 2076 133 0 0 chr1 70532484 70532763 -211660901 - AluSg SINE Alu -30 280 2 4607 175 46 122 chr1 70532763 70532887 -211660777 + Charlie1a DNA MER1_type 1211 1343 -112 2286 181 35 29 chr1 70532919 70533371 -211660293 - MLT2C2 LTR ERVL -9 455 1 251 267 18 0 chr1 70533373 70533454 -211660210 - L1MA10 LINE L1 -93 6232 5989 324 100 0 100 chr1 70533454 70533487 -211660177 + Charlie1a DNA MER1_type 1396 1422 -1339 1846 173 97 27 chr1 70533487 70533891 -211659773 - MSTB1 LTR MaLR 0 432 1 324 100 0 100 chr1 70533891 70533917 -211659747 + Charlie1a DNA MER1_type 1422 1449 -6 2227 112 0 3 chr1 70533950 70534255 -211659409 + AluSx SINE Alu 1 304 -8 468 239 35 0 chr1 70534489 70534602 -211659062 + MER103 DNA DNA 36 152 -14 399 271 172 21 chr1 70534738 70534930 -211658734 - MIR SINE MIR -21 241 21 2619 197 64 8 chr1 70535475 70535993 -211657671 - MER68 LTR ERV1 -10 552 6 213 234 39 52 chr1 70536010 70536087 -211657577 + MIR SINE MIR 149 224 -38 352 350 7 39 chr1 70536128 70536281 -211657383 - MIR SINE MIR -63 145 2 22 35 0 0 chr1 70536312 70536341 -211657323 + AT_rich Low_complexity Low_complexity 1 29 0 825 178 73 31 chr1 70537173 70537364 -211656300 - AluJo SINE Alu -2 310 112 24 0 0 0 chr1 70537409 70537433 -211656231 + AT_rich Low_complexity Low_complexity 1 24 0 1468 129 18 0 chr1 70537505 70537722 -211655942 - AluSx SINE Alu -10 300 80 227 163 0 0 chr1 70537722 70537765 -211655899 + Alu SINE Alu 259 301 -1 546 49 0 0 chr1 70537765 70537826 -211655838 - AluSx SINE Alu -234 79 19 21 0 0 0 chr1 70538413 70538434 -211655230 + AT_rich Low_complexity Low_complexity 1 21 0 305 304 11 11 chr1 70539199 70539291 -211654373 + MIR SINE MIR 47 138 -124 250 271 0 14 chr1 70539636 70539706 -211653958 + AluJo SINE Alu 80 148 -154 2168 127 0 0 chr1 70539776 70540076 -211653588 - AluSx SINE Alu -6 306 7 205 200 0 0 chr1 70540084 70540124 -211653540 + L2 LINE L2 2198 2237 -1077 1683 243 112 33 chr1 70540169 70540470 -211653194 + L2 LINE L2 2231 2507 -807 2185 88 15 0 chr1 70540470 70540742 -211652922 + AluSg SINE Alu 1 276 -34 180 0 0 0 chr1 70540745 70540765 -211652899 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 222 37 0 0 chr1 70540767 70540794 -211652870 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 1683 243 112 33 chr1 70540794 70541066 -211652598 + L2 LINE L2 2508 2857 -457 227 325 85 38 chr1 70541066 70541408 -211652256 - L1MEd LINE L1 -5700 419 62 180 308 19 0 chr1 70541917 70541969 -211651695 + MIR SINE MIR 94 146 -62 42 48 0 0 chr1 70542105 70542168 -211651496 + AT_rich Low_complexity Low_complexity 1 63 0 325 325 108 18 chr1 70542190 70542356 -211651308 - MIR SINE MIR -71 191 11 2265 90 3 7 chr1 70542408 70542724 -211650940 - AluSp SINE Alu 0 313 11 210 222 0 69 chr1 70542762 70542787 -211650877 + A-rich Low_complexity Low_complexity 4 29 -41 1915 157 16 0 chr1 70542787 70543093 -211650571 + AluSx SINE Alu 1 311 -1 210 222 0 69 chr1 70543093 70543139 -211650525 + A-rich Low_complexity Low_complexity 29 70 0 2076 126 3 0 chr1 70543291 70543585 -211650079 + AluSx SINE Alu 1 295 -17 1080 188 0 0 chr1 70543818 70543983 -211649681 + FRAM SINE Alu 2 166 0 1803 186 75 85 chr1 70544117 70544263 -211649401 - MLT1E2 LTR MaLR 0 626 480 2358 107 0 0 chr1 70544263 70544573 -211649091 - AluSx SINE Alu -2 310 1 1803 186 75 85 chr1 70544573 70544921 -211648743 - MLT1E2 LTR MaLR -146 480 137 235 245 20 0 chr1 70544960 70545009 -211648655 - MLT1E2 LTR MaLR -604 50 1 2243 104 7 0 chr1 70546281 70546589 -211647075 - AluSx SINE Alu -2 310 1 21 0 0 0 chr1 70546812 70546833 -211646831 + AT_rich Low_complexity Low_complexity 1 21 0 932 136 0 7 chr1 70546835 70546982 -211646682 - AluSg/x SINE Alu -15 297 152 1695 125 89 25 chr1 70547218 70547499 -211646165 + AluJb SINE Alu 1 299 -13 417 302 123 33 chr1 70547914 70548126 -211645538 - MIR SINE MIR -28 234 4 2019 110 3 29 chr1 70548136 70548444 -211645220 - AluSx SINE Alu -12 300 1 329 268 30 43 chr1 70548445 70548594 -211645070 - MIR SINE MIR -62 146 5 800 126 0 8 chr1 70548624 70548743 -211644921 + AluJb SINE Alu 1 118 -194 289 105 0 0 chr1 70548805 70548843 -211644821 - L1PA8 LINE L1 -90 6082 6045 2369 92 0 3 chr1 70549066 70549372 -211644292 + AluSp SINE Alu 1 305 -8 330 87 0 0 chr1 70549408 70549454 -211644210 + (GA)n Simple_repeat Simple_repeat 1 46 0 2117 152 68 68 chr1 70550238 70550424 -211643240 + MSTA LTR MaLR 1 186 -242 2073 142 3 0 chr1 70550424 70550720 -211642944 + AluSx SINE Alu 1 297 -15 2117 152 68 68 chr1 70550720 70550961 -211642703 + MSTA LTR MaLR 185 428 0 222 323 42 10 chr1 70551049 70551145 -211642519 - MIR3 SINE MIR -3 205 107 329 327 13 32 chr1 70551172 70551328 -211642336 - MER5A DNA MER1_type 0 189 37 * 457 311 6 61 chr1 70551198 70551362 -211642302 + MER5A DNA MER1_type 35 189 0 685 274 30 5 chr1 70551498 70551695 -211641969 + MIR SINE MIR 4 205 -57 23 0 0 0 chr1 70551933 70551956 -211641708 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr1 70552028 70552051 -211641613 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2176 116 20 0 chr1 70552072 70552365 -211641299 + AluSq SINE Alu 1 299 -14 213 39 0 0 chr1 70552466 70552492 -211641172 + (A)n Simple_repeat Simple_repeat 1 26 0 315 0 0 0 chr1 70554025 70554060 -211639604 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 727 183 11 11 chr1 70554060 70554235 -211639429 + CT-rich Low_complexity Low_complexity 2 176 0 1994 107 0 25 chr1 70554236 70554516 -211639148 - AluSx SINE Alu -39 273 1 2012 135 7 10 chr1 70555152 70555448 -211638216 - AluSx SINE Alu -17 295 1 1702 162 7 17 chr1 70555544 70555841 -211637823 - AluJb SINE Alu -18 294 1 1762 141 31 7 chr1 70555952 70556243 -211637421 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr1 70556508 70556537 -211637127 + AT_rich Low_complexity Low_complexity 1 29 0 2285 92 3 3 chr1 70556539 70556831 -211636833 - AluSg SINE Alu -17 293 2 28 29 0 0 chr1 70556862 70556897 -211636767 + AT_rich Low_complexity Low_complexity 1 35 0 4475 159 35 55 chr1 70556897 70557913 -211635751 - L1PB4 LINE L1 -4 6152 5158 6198 63 3 5 chr1 70557915 70558055 -211635609 - L1PA5 LINE L1 0 6154 6015 2535 263 16 14 chr1 70558055 70558781 -211634883 - L1PB1 LINE L1 -133 6018 5291 26 0 0 0 chr1 70558927 70558953 -211634711 + AT_rich Low_complexity Low_complexity 1 26 0 1366 81 0 0 chr1 70559513 70559686 -211633978 - L1PA5 LINE L1 0 6154 5982 2185 106 3 0 chr1 70559686 70559969 -211633695 - AluSq SINE Alu -29 284 1 28 0 0 0 chr1 70560003 70560031 -211633633 + AT_rich Low_complexity Low_complexity 1 28 0 834 140 0 0 chr1 70560031 70560145 -211633519 - FLAM_C SINE Alu -19 124 11 24 0 0 0 chr1 70560235 70560259 -211633405 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr1 70560854 70560897 -211632767 + AT_rich Low_complexity Low_complexity 1 43 0 274 249 113 49 chr1 70561083 70561268 -211632396 + L1MC/D LINE L1 5308 5504 -2304 2552 54 0 0 chr1 70563914 70564212 -211629452 + AluY SINE Alu 1 298 -13 1941 128 11 0 chr1 70564446 70564763 -211628901 + AluSq SINE Alu 1 320 0 1694 167 7 0 chr1 70564763 70565044 -211628620 - AluJo SINE Alu -21 291 9 21 57 0 0 chr1 70565071 70565106 -211628558 + AT_rich Low_complexity Low_complexity 1 35 0 816 185 8 0 chr1 70566136 70566266 -211627398 - FLAM_C SINE Alu -2 131 1 2376 89 3 0 chr1 70566959 70567263 -211626401 - AluSp SINE Alu -8 305 1 2280 99 3 13 chr1 70567414 70567726 -211625938 - AluSx SINE Alu -3 309 1 2188 106 0 0 chr1 70567993 70568319 -211625345 + AluSg SINE Alu 1 326 0 1394 96 0 11 chr1 70568319 70568506 -211625158 + AluSq SINE Alu 108 292 -21 559 280 114 14 chr1 70568540 70568751 -211624913 + MIR SINE MIR 2 233 -29 2113 109 21 3 chr1 70568812 70569096 -211624568 - AluSq SINE Alu -24 289 1 24 32 0 0 chr1 70569102 70569133 -211624531 + AT_rich Low_complexity Low_complexity 1 31 0 2593 38 0 0 chr1 70569352 70569643 -211624021 + AluY SINE Alu 1 291 -20 247 268 80 29 chr1 70569649 70569787 -211623877 - L1MCc LINE L1 -4910 1513 1369 453 84 0 0 chr1 70569927 70569998 -211623666 + (GA)n Simple_repeat Simple_repeat 2 72 0 513 0 0 0 chr1 70569998 70570055 -211623609 + (TG)n Simple_repeat Simple_repeat 1 57 0 2143 131 0 0 chr1 70570153 70570450 -211623214 + AluSx SINE Alu 1 297 -15 225 226 0 0 chr1 70570915 70570968 -211622696 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 796 230 102 36 chr1 70571065 70571339 -211622325 - L2 LINE L2 -1 3312 3021 2287 92 3 25 chr1 70571680 70571995 -211621669 - AluSx SINE Alu -4 308 1 315 0 0 0 chr1 70572072 70572107 -211621557 + (TG)n Simple_repeat Simple_repeat 1 35 0 734 152 23 38 chr1 70572333 70572465 -211621199 + FLAM_C SINE Alu 1 130 -3 336 330 17 34 chr1 70573006 70573185 -211620479 - MIR SINE MIR -36 226 51 754 73 31 0 chr1 70573188 70573284 -211620380 + U6 snRNA snRNA 2 100 -7 30 0 0 0 chr1 70573288 70573318 -211620346 + AT_rich Low_complexity Low_complexity 1 30 0 231 297 34 68 chr1 70573610 70573728 -211619936 - MER5B DNA MER1_type -17 161 48 184 328 114 15 chr1 70573815 70573946 -211619718 - L2 LINE L2 -216 3056 2913 2248 109 10 0 chr1 70574150 70574453 -211619211 + AluSq SINE Alu 1 306 -7 208 346 12 0 chr1 70575883 70575964 -211617700 + L2 LINE L2 2989 3070 -243 354 306 112 8 chr1 70576168 70576302 -211617362 + L2 LINE L2 3158 3305 -8 638 212 0 0 chr1 70576408 70576526 -211617138 + MER63 DNA MER1_type 677 794 -266 877 144 58 137 chr1 70576665 70576814 -211616850 + MER63 DNA MER1_type 807 966 -96 1966 126 14 7 chr1 70576814 70577108 -211616556 - AluSx SINE Alu -16 296 1 198 0 0 0 chr1 70577108 70577130 -211616534 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2161 110 3 0 chr1 70577130 70577412 -211616252 - AluSp SINE Alu -30 283 1 877 144 58 137 chr1 70577412 70577538 -211616126 + MER63 DNA MER1_type 963 1062 0 2302 70 3 17 chr1 70577814 70578114 -211615550 - AluY SINE Alu -15 296 1 284 266 75 0 chr1 70578865 70578959 -211614705 - L2 LINE L2 -4 3268 3168 1471 110 29 45 chr1 70578982 70579228 -211614436 + AluSc SINE Alu 68 309 0 431 289 25 31 chr1 70580552 70580711 -211612953 + MER117 DNA MER1_type 1 158 -39 970 138 0 0 chr1 70581006 70581136 -211612528 - FLAM_C SINE Alu -3 130 1 421 116 0 116 chr1 70581144 70581193 -211612471 - L1MB4 LINE L1 0 6180 6146 1889 171 3 0 chr1 70581193 70581498 -211612166 - AluJo SINE Alu -6 306 1 421 116 0 116 chr1 70581498 70581543 -211612121 - L1MB4 LINE L1 -34 6146 6097 346 277 149 39 chr1 70581755 70581933 -211611731 + MIR3 SINE MIR 11 206 -56 180 0 0 0 chr1 70582276 70582296 -211611368 + (TG)n Simple_repeat Simple_repeat 2 21 0 27 49 0 0 chr1 70583503 70583544 -211610120 + AT_rich Low_complexity Low_complexity 1 41 0 2243 87 17 3 chr1 70584733 70585031 -211608633 + AluSp SINE Alu 1 302 -11 21 0 0 0 chr1 70585126 70585147 -211608517 + AT_rich Low_complexity Low_complexity 1 21 0 1605 170 45 17 chr1 70585170 70585458 -211608206 - AluJo SINE Alu -16 296 1 482 304 62 21 chr1 70585623 70585817 -211607847 + MIR SINE MIR 57 258 -4 198 370 42 34 chr1 70585920 70586039 -211607625 + L2 LINE L2 3139 3258 -14 5895 113 17 3 chr1 70586876 70587680 -211605984 + L1PA15 LINE L1 4238 5030 -1135 2289 98 3 3 chr1 70587680 70587985 -211605679 + AluY SINE Alu 1 305 -6 5895 113 17 3 chr1 70587985 70589118 -211604546 + L1PA15 LINE L1 5030 6164 -1 27 0 0 0 chr1 70589121 70589148 -211604516 + AT_rich Low_complexity Low_complexity 1 27 0 321 236 130 49 chr1 70589370 70589493 -211604171 - L2 LINE L2 -1 3312 3180 1029 134 10 21 chr1 70590846 70591040 -211602624 - L1MB7 LINE L1 -12 6172 5981 1879 141 50 0 chr1 70591517 70591800 -211601864 - AluSx SINE Alu -13 299 3 217 326 126 0 chr1 70591995 70592130 -211601534 + L2 LINE L2 3162 3313 0 2019 131 0 0 chr1 70592164 70592477 -211601187 - AluSx SINE Alu 0 313 1 22 35 0 0 chr1 70593021 70593050 -211600614 + AT_rich Low_complexity Low_complexity 1 29 0 204 216 72 72 chr1 70593853 70593964 -211599700 + MIR SINE MIR 97 207 -55 2156 124 3 3 chr1 70594282 70594581 -211599083 + AluSx SINE Alu 3 301 -11 374 256 125 59 chr1 70595477 70595766 -211597898 - L1MC4a LINE L1 -1926 5882 5575 209 194 0 0 chr1 70597685 70597721 -211595943 + A-rich Low_complexity Low_complexity 4 39 0 1739 133 75 4 chr1 70598394 70598672 -211594992 + AluJo SINE Alu 1 298 -14 574 237 59 7 chr1 70598874 70599026 -211594638 - L2 LINE L2 -12 3301 3142 1633 155 76 19 chr1 70599392 70599591 -211594073 + MER44D DNA MER2_type 5 191 -2300 1839 135 62 49 chr1 70599591 70599961 -211593703 + THE1C LTR MaLR 1 375 0 1633 155 76 19 chr1 70599961 70600078 -211593586 + MER44D DNA MER2_type 191 609 0 559 278 53 12 chr1 70600078 70600247 -211593417 - MIR SINE MIR -27 235 60 28 0 0 0 chr1 70600468 70600496 -211593168 + AT_rich Low_complexity Low_complexity 1 28 0 206 174 22 0 chr1 70601025 70601071 -211592593 + (TAA)n Simple_repeat Simple_repeat 3 49 0 307 313 37 8 chr1 70601118 70601252 -211592412 - MIR SINE MIR -50 212 75 448 115 26 0 chr1 70601445 70601523 -211592141 - L1MB2 LINE L1 -14 6157 6078 2133 114 0 7 chr1 70601536 70601835 -211591829 - AluSx SINE Alu -15 297 1 409 300 71 35 chr1 70603050 70603220 -211590444 - MIR3 SINE MIR -9 199 24 21 0 0 0 chr1 70603506 70603527 -211590137 + AT_rich Low_complexity Low_complexity 1 21 0 650 152 98 0 chr1 70603528 70603640 -211590024 - FLAM_C SINE Alu -10 123 1 1776 161 17 7 chr1 70604248 70604540 -211589124 + AluJb SINE Alu 1 295 -17 921 238 53 25 chr1 70605588 70605832 -211587832 + MIR SINE MIR 2 252 -10 346 270 63 58 chr1 70605925 70606114 -211587550 - L2 LINE L2 -6 3307 3118 417 366 41 22 chr1 70606517 70606831 -211586833 - L2 LINE L2 -528 2786 2467 1039 167 23 0 chr1 70606866 70607040 -211586624 + AluSx SINE Alu 41 218 -94 592 183 29 0 chr1 70607429 70607533 -211586131 + U6 snRNA snRNA 1 107 0 24 0 0 0 chr1 70608263 70608287 -211585377 + AT_rich Low_complexity Low_complexity 1 24 0 763 250 98 9 chr1 70609491 70609715 -211583949 + MIR SINE MIR 14 257 -5 21 36 0 0 chr1 70609927 70609955 -211583709 + AT_rich Low_complexity Low_complexity 1 28 0 1591 166 13 54 chr1 70610330 70610644 -211583020 - AluJb SINE Alu -11 301 1 600 238 25 16 chr1 70610669 70610791 -211582873 - FLAM_A SINE Alu -10 123 1 499 306 126 9 chr1 70611205 70611427 -211582237 + MIR SINE MIR 6 253 -9 25 0 0 0 chr1 70611514 70611539 -211582125 + AT_rich Low_complexity Low_complexity 1 25 0 1859 141 3 14 chr1 70611539 70611823 -211581841 - AluSx SINE Alu -31 281 1 1420 184 19 12 chr1 70612285 70612541 -211581123 - AluJb SINE Alu -54 258 1 195 42 0 0 chr1 70612547 70612571 -211581093 + (TA)n Simple_repeat Simple_repeat 1 24 0 2235 102 7 0 chr1 70612584 70612877 -211580787 - AluSx SINE Alu -17 295 1 1838 163 7 0 chr1 70613408 70613715 -211579949 - AluJo SINE Alu -3 309 1 24 0 0 0 chr1 70614009 70614033 -211579631 + AT_rich Low_complexity Low_complexity 1 24 0 207 162 0 0 chr1 70615542 70615579 -211578085 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1693 144 0 83 chr1 70615583 70615922 -211577742 - AluJb SINE Alu 0 312 2 22 35 0 0 chr1 70616033 70616062 -211577602 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 70616796 70616820 -211576844 + AT_rich Low_complexity Low_complexity 1 24 0 1544 167 144 4 chr1 70667402 70667666 -211525998 + AluJo SINE Alu 1 301 -1 2352 97 7 0 chr1 70667857 70668166 -211525498 + AluSp SINE Alu 1 311 -2 2030 134 70 31 chr1 70668244 70668603 -211525061 + THE1C LTR MaLR 1 373 -2 10743 122 9 35 chr1 70668604 70669900 -211523764 + THE1C-int LTR MaLR 4 1250 -330 2058 126 10 0 chr1 70669900 70670193 -211523471 + AluSx SINE Alu 1 296 -16 10743 122 9 35 chr1 70670193 70670516 -211523148 + THE1C-int LTR MaLR 1250 1580 0 1820 144 88 28 chr1 70670516 70670870 -211522794 + THE1C LTR MaLR 1 375 0 689 290 38 81 chr1 70671235 70671732 -211521932 - MLT1J LTR MaLR -33 478 3 198 151 68 110 chr1 70672049 70672122 -211521542 + MIR SINE MIR 101 170 -92 1863 162 10 0 chr1 70672131 70672421 -211521243 - AluJo SINE Alu -19 293 1 207 306 16 16 chr1 70672514 70672576 -211521088 - MIR SINE MIR -111 97 36 1214 177 20 0 chr1 70672673 70672871 -211520793 - AluJb SINE Alu -15 297 96 2471 36 0 0 chr1 70674463 70674772 -211518892 - AluY SINE Alu 0 309 1 26 30 0 0 chr1 70675042 70675075 -211518589 + AT_rich Low_complexity Low_complexity 1 33 0 1945 137 17 3 chr1 70675824 70676123 -211517541 + AluSx SINE Alu 1 303 -9 263 294 72 26 chr1 70676313 70676466 -211517198 + MIR SINE MIR 49 208 -54 1595 274 150 18 chr1 70676538 70677397 -211516267 - L2 LINE L2 -68 3245 2268 532 286 154 55 chr1 70677448 70677659 -211516005 - L1M4 LINE L1 -3602 2544 2291 2334 95 0 3 chr1 70677659 70677955 -211515709 - AluSx SINE Alu -15 297 3 532 286 154 55 chr1 70677955 70678054 -211515610 - L1M4 LINE L1 -3855 2291 2203 1122 293 13 0 chr1 70678161 70678465 -211515199 - L1MD2 LINE L1 -20 6339 6032 1003 124 33 0 chr1 70678466 70678619 -211515045 - THE1C LTR MaLR 0 375 218 808 229 21 5 chr1 70678629 70678821 -211514843 - L1MD2 LINE L1 -346 6013 5819 803 156 16 0 chr1 70678825 70678947 -211514717 + FLAM_C SINE Alu 2 125 -18 1721 161 65 29 chr1 70678991 70679332 -211514332 - MLT1A1 LTR MaLR -12 353 1 1476 198 38 14 chr1 70679332 70679620 -211514044 - L1MD2 LINE L1 -554 5805 5511 1919 201 170 66 chr1 70679621 70680418 -211513246 - MER21B LTR ERV1 -12 919 40 1291 306 149 23 chr1 70680460 70680768 -211512896 + L2 LINE L2 980 1248 -2066 2684 99 44 8 chr1 70680768 70681130 -211512534 + THE1C LTR MaLR 1 375 0 1291 306 149 23 chr1 70681130 70681554 -211512110 + L2 LINE L2 1248 1804 -1510 245 323 92 8 chr1 70682565 70682695 -211510969 + MIR SINE MIR 1 141 -121 2226 128 0 0 chr1 70682859 70683163 -211510501 - AluSx SINE Alu -8 304 1 282 158 109 79 chr1 70683252 70683353 -211510311 - Charlie8 DNA MER1_type -314 2103 2000 1169 196 14 0 chr1 70683353 70683567 -211510097 - AluJo SINE Alu -9 303 87 2613 249 87 43 chr1 70683810 70684420 -211509244 - Charlie8 DNA MER1_type -540 1877 1210 1802 182 7 3 chr1 70684420 70684728 -211508936 - AluJb SINE Alu -1 311 3 2613 249 87 43 chr1 70684728 70685047 -211508617 - Charlie8 DNA MER1_type -1207 1210 907 2022 94 65 7 chr1 70685078 70685378 -211508286 - AluSg SINE Alu 0 310 1 263 48 0 24 chr1 70685569 70685611 -211508053 + (TA)n Simple_repeat Simple_repeat 1 41 0 36 0 0 0 chr1 70685882 70685918 -211507746 + AT_rich Low_complexity Low_complexity 1 36 0 1862 141 7 31 chr1 70686195 70686534 -211507130 + AluSx SINE Alu 1 332 0 359 81 47 47 chr1 70686534 70686620 -211507044 + G-rich Low_complexity Low_complexity 2 87 0 1467 189 94 7 chr1 70687105 70687391 -211506273 - AluJo SINE Alu -1 311 1 321 356 83 0 chr1 70687489 70687621 -211506043 - L2 LINE L2 -1 3271 3129 2240 118 0 0 chr1 70688057 70688361 -211505303 + AluSq SINE Alu 1 304 -9 221 0 35 0 chr1 70688578 70688607 -211505057 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 230 347 80 24 chr1 70688795 70689008 -211504656 + L2 LINE L2 2868 3092 -180 600 299 63 19 chr1 70689199 70689567 -211504097 - L1M4 LINE L1 -1311 4835 4436 2255 116 0 6 chr1 70689567 70689878 -211503786 - AluSc SINE Alu 0 309 1 600 299 63 19 chr1 70689878 70690034 -211503630 - L1M4 LINE L1 -1710 4436 4288 323 241 44 76 chr1 70690061 70690219 -211503445 - L1ME4a LINE L1 -46 6075 5923 975 265 77 83 chr1 70690246 70690500 -211503164 - L1M4 LINE L1 -1892 4254 4000 2836 192 18 82 chr1 70690500 70691239 -211502425 - LTR8 LTR ERV1 0 691 1 975 265 77 83 chr1 70691239 70691655 -211502009 - L1M4 LINE L1 -2146 4000 3583 2428 100 0 0 chr1 70691655 70691965 -211501699 + AluSg SINE Alu 1 310 0 975 265 77 83 chr1 70691965 70692188 -211501476 - L1M4 LINE L1 -2563 3583 3360 2034 124 10 13 chr1 70692188 70692494 -211501170 - AluSx SINE Alu -7 305 1 975 265 77 83 chr1 70692494 70692564 -211501100 - L1M4 LINE L1 -2786 3360 3291 1834 151 19 19 chr1 70692564 70692876 -211500788 + AluJb SINE Alu 1 312 0 975 265 77 83 chr1 70692876 70693185 -211500479 - L1M4 LINE L1 -2855 3291 2982 1601 195 30 7 chr1 70693185 70693488 -211500176 - AluJb SINE Alu -2 310 1 975 265 77 83 chr1 70693488 70694078 -211499586 - L1M4 LINE L1 -3164 2982 2400 1865 122 113 27 chr1 70694119 70694454 -211499210 + THE1B LTR MaLR 1 364 0 2389 92 7 0 chr1 70694583 70694889 -211498775 - AluSx SINE Alu -4 308 1 452 236 145 62 chr1 70695574 70695816 -211497848 + L1ME1 LINE L1 5898 6159 -7 217 232 0 36 chr1 70695835 70695891 -211497773 - L2 LINE L2 -81 3232 3179 2083 151 3 6 chr1 70695916 70696227 -211497437 - AluSx SINE Alu -2 310 1 481 202 128 0 chr1 70696296 70696405 -211497259 + L2 LINE L2 3190 3312 -1 259 322 0 22 chr1 70696663 70696753 -211496911 - L2 LINE L2 -7 3306 3219 2226 108 0 13 chr1 70697519 70697824 -211495840 + AluSq SINE Alu 1 301 -12 2181 122 10 0 chr1 70697972 70698267 -211495397 + AluSx SINE Alu 1 298 -14 2587 20 40 0 chr1 70698814 70699152 -211494512 + AluY SINE Alu 1 350 0 910 184 38 26 chr1 70699565 70699832 -211493832 - LTR37B LTR ERV1 -2 466 197 269 243 14 14 chr1 70699958 70700028 -211493636 - L2 LINE L2 -1 3312 3243 694 166 21 0 chr1 70702249 70702394 -211491270 + L1MB7 LINE L1 6012 6159 -25 451 254 236 0 chr1 70702453 70702618 -211491046 + MIR SINE MIR 49 252 -10 42 77 0 0 chr1 70702634 70702725 -211490939 + AT_rich Low_complexity Low_complexity 1 91 0 558 268 25 61 chr1 70703176 70703374 -211490290 + MIR SINE MIR 52 242 -20 632 280 143 16 chr1 70703376 70703565 -211490099 - MIR SINE MIR -24 238 26 922 106 16 0 chr1 70703621 70703744 -211489920 + AluSq/x SINE Alu 1 125 -187 1225 168 180 25 chr1 70704468 70704591 -211489073 - AluJo SINE Alu -24 288 185 2116 98 27 10 chr1 70704591 70704886 -211488778 - AluSp SINE Alu -13 300 1 1225 168 180 25 chr1 70704886 70705006 -211488658 - AluJo SINE Alu -127 185 7 419 266 154 21 chr1 70705058 70705246 -211488418 - L2 LINE L2 -1 3312 3100 188 119 0 24 chr1 70705261 70705303 -211488361 + (TAAAAA)n Simple_repeat Simple_repeat 1 41 0 1773 178 3 3 chr1 70705365 70705652 -211488012 + AluJb SINE Alu 1 287 -25 711 170 77 81 chr1 70705720 70705967 -211487697 + MER112 DNA MER1_type 15 260 0 408 205 28 181 chr1 70705972 70706187 -211487477 - MER5A DNA MER1_type -3 186 5 265 284 30 59 chr1 70706201 70706449 -211487215 - L2 LINE L2 -1096 2218 1912 2060 108 4 0 chr1 70706502 70706780 -211486884 + AluSx SINE Alu 2 280 -32 2194 89 3 7 chr1 70707160 70707451 -211486213 + AluSg SINE Alu 19 308 -2 1313 108 0 0 chr1 70707824 70707986 -211485678 - AluSg/x SINE Alu -17 295 131 2299 86 3 0 chr1 70707986 70708301 -211485363 - AluSq SINE Alu 0 313 1 1313 108 0 0 chr1 70708301 70708314 -211485350 - AluSg/x SINE Alu -180 132 120 301 321 28 0 chr1 70708340 70708446 -211485218 - MIR SINE MIR -2 260 152 256 344 55 60 chr1 70708456 70708639 -211485025 + L2 LINE L2 3011 3192 -80 1828 185 7 0 chr1 70709394 70709686 -211483978 + AluJb SINE Alu 1 294 -18 757 92 54 113 chr1 70709888 70710073 -211483591 - L1MB7 LINE L1 -5 6179 6006 37 62 0 0 chr1 70710078 70710143 -211483521 + AT_rich Low_complexity Low_complexity 1 65 0 2140 94 0 27 chr1 70710463 70710761 -211482903 - AluSx SINE Alu -22 290 1 966 141 14 0 chr1 70711116 70711258 -211482406 - AluJb SINE Alu -10 302 159 2320 113 3 0 chr1 70711524 70711833 -211481831 - AluSp SINE Alu -3 310 1 812 202 16 22 chr1 70711922 70712105 -211481559 - MER20 DNA MER1_type -5 214 33 191 30 0 61 chr1 70712266 70712299 -211481365 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 776 148 22 7 chr1 70712300 70712435 -211481229 + L1PA16 LINE L1 6029 6165 -1 888 172 0 0 chr1 70712451 70712585 -211481079 + AluJo SINE Alu 1 134 -178 1697 61 0 19 chr1 70712819 70713032 -211480632 + AluSg/x SINE Alu 98 306 -4 281 149 15 0 chr1 70713201 70713268 -211480396 + (CA)n Simple_repeat Simple_repeat 1 68 0 340 282 65 73 chr1 70713353 70713560 -211480104 + L1ME LINE L1 5389 5593 -528 2314 77 40 0 chr1 70713560 70713857 -211479807 - AluSq SINE Alu -4 309 1 340 282 65 73 chr1 70713857 70713989 -211479675 + L1ME LINE L1 5593 5725 -396 355 249 115 42 chr1 70714061 70714226 -211479438 + MIR SINE MIR 78 254 -8 2356 101 0 3 chr1 70714318 70714626 -211479038 + AluSc SINE Alu 1 307 -2 30 0 0 0 chr1 70714672 70714702 -211478962 + AT_rich Low_complexity Low_complexity 1 30 0 1996 142 0 0 chr1 70715252 70715560 -211478104 + AluSx SINE Alu 1 308 0 25 0 0 0 chr1 70715612 70715637 -211478027 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 70715658 70715679 -211477985 + AT_rich Low_complexity Low_complexity 1 21 0 2068 181 140 18 chr1 70716172 70716433 -211477231 + L1MB7 LINE L1 5279 5507 -677 2226 114 7 0 chr1 70716433 70716732 -211476932 - AluSx SINE Alu -11 301 1 2068 181 140 18 chr1 70716732 70717013 -211476651 + L1MB7 LINE L1 5507 5887 -297 38768 65 12 2 chr1 70717026 70723108 -211470556 + L1PA5 LINE L1 11 6153 -1 549 187 83 63 chr1 70723116 70723383 -211470281 + L1MB7 LINE L1 5876 6184 0 22 0 0 0 chr1 70723393 70723415 -211470249 + AT_rich Low_complexity Low_complexity 1 22 0 1896 161 17 0 chr1 70723508 70723799 -211469865 + AluSx SINE Alu 1 296 -16 2164 104 3 17 chr1 70723801 70724100 -211469564 + AluSx SINE Alu 1 295 -17 364 300 92 0 chr1 70724161 70724281 -211469383 - MIR3 SINE MIR -34 174 44 197 83 28 0 chr1 70724582 70724618 -211469046 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1905 114 8 0 chr1 70724753 70725015 -211468649 + AluSx SINE Alu 6 269 -43 264 125 196 0 chr1 70725026 70725082 -211468582 + AluSp/q SINE Alu 237 303 0 234 0 0 0 chr1 70726137 70726163 -211467501 + (GA)n Simple_repeat Simple_repeat 1 26 0 2389 84 0 0 chr1 70728639 70728936 -211464728 - AluY SINE Alu -14 297 1 191 290 70 60 chr1 70729541 70729641 -211464023 - MIR SINE MIR -14 248 148 390 236 27 18 chr1 70731580 70731690 -211461974 + MER58B DNA MER1_type 230 340 -1 469 346 26 48 chr1 70731717 70731945 -211461719 + MIR SINE MIR 36 258 -4 458 258 58 32 chr1 70732606 70732761 -211460903 + MIR3 SINE MIR 35 193 -15 26 0 0 0 chr1 70733283 70733309 -211460355 + AT_rich Low_complexity Low_complexity 1 26 0 1847 142 3 24 chr1 70733309 70733597 -211460067 - AluJb SINE Alu -2 310 29 1269 177 0 9 chr1 70733707 70733922 -211459742 + AluJo SINE Alu 85 297 -15 358 268 232 0 chr1 70734017 70734185 -211459479 + MIR SINE MIR 12 218 -44 2359 83 3 7 chr1 70734263 70734563 -211459101 + AluSq SINE Alu 1 299 -14 272 273 0 0 chr1 70735123 70735189 -211458475 - MER91A DNA MER1_type -122 74 9 22 56 0 0 chr1 70735386 70735422 -211458242 + AT_rich Low_complexity Low_complexity 1 36 0 2486 93 0 0 chr1 70735570 70735882 -211457782 + AluSp SINE Alu 1 312 -1 1103 262 92 47 chr1 70736547 70737016 -211456648 - MLT1J LTR MaLR -10 501 12 1831 135 58 42 chr1 70737031 70737198 -211456466 - Tigger2a DNA MER2_type -2324 384 221 2197 122 0 3 chr1 70737198 70737492 -211456172 + AluSx SINE Alu 3 295 -17 1831 135 58 42 chr1 70737492 70737702 -211455962 - Tigger2a DNA MER2_type -2487 221 1 345 100 0 0 chr1 70737946 70737996 -211455668 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 1952 134 0 0 chr1 70737997 70738265 -211455399 - AluSx SINE Alu -44 268 1 1909 167 3 7 chr1 70738390 70738696 -211454968 + AluJb SINE Alu 1 305 -7 2082 133 0 31 chr1 70738713 70739035 -211454629 + AluSx SINE Alu 1 312 0 346 293 79 30 chr1 70739070 70739234 -211454430 + MIR SINE MIR 64 235 -27 328 289 149 18 chr1 70739525 70739639 -211454025 - MIR SINE MIR -132 130 2 2151 130 0 0 chr1 70739784 70740083 -211453581 - AluSg SINE Alu -11 299 1 3712 61 72 17 chr1 70740194 70740287 -211453377 - MER41A LTR ERV1 0 554 468 2221 127 0 0 chr1 70740287 70740587 -211453077 + AluSq SINE Alu 1 300 -13 3712 61 72 17 chr1 70740587 70741018 -211452646 - MER41A LTR ERV1 -86 468 1 580 141 74 7 chr1 70742295 70742430 -211451234 - L1MB2 LINE L1 0 6171 6028 1943 60 0 8 chr1 70742442 70742693 -211450971 - L1PA5 LINE L1 -1 6153 5905 3559 167 22 77 chr1 70742696 70743579 -211450085 - L1MB2 LINE L1 -131 6040 5232 2218 111 0 0 chr1 70743579 70743877 -211449787 - AluSx SINE Alu -14 298 1 3559 167 22 77 chr1 70743877 70744076 -211449588 - L1MB2 LINE L1 -939 5232 5024 1463 179 45 3 chr1 70744107 70744419 -211449245 - L1MC1 LINE L1 -10 6323 5999 1384 195 8 8 chr1 70744419 70744676 -211448988 - AluJo SINE Alu -55 257 1 243 318 149 9 chr1 70745038 70745145 -211448519 - MIR3 SINE MIR -84 124 3 1607 148 141 0 chr1 70745251 70745514 -211448150 + AluJb SINE Alu 1 300 -2 1639 198 17 0 chr1 70745595 70745888 -211447776 + AluJb SINE Alu 1 298 -14 1849 169 47 0 chr1 70745915 70746259 -211447405 - MER46B DNA MER2_type -1 235 1 238 219 68 14 chr1 70746375 70746448 -211447216 + MIR SINE MIR 81 157 -105 22 35 0 0 chr1 70746942 70746971 -211446693 + AT_rich Low_complexity Low_complexity 1 29 0 305 304 76 76 chr1 70747843 70748001 -211445663 - MER5A DNA MER1_type -16 173 16 1048 83 0 0 chr1 70748289 70748421 -211445243 - AluSp/q SINE Alu -5 308 177 469 177 0 0 chr1 70748421 70748500 -211445164 + AluY SINE Alu 217 295 -16 762 89 0 0 chr1 70748503 70748604 -211445060 + LTR36 LTR ERV1 450 550 -61 294 77 0 138 chr1 70748601 70748666 -211444998 - LTR36 LTR ERV1 -555 56 1 * 261 0 0 0 chr1 70748818 70748847 -211444817 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1699 175 4 11 chr1 70748848 70749128 -211444536 - AluJo SINE Alu -32 280 3 296 295 26 0 chr1 70749281 70749359 -211444305 + L2 LINE L2 3193 3272 0 463 277 75 19 chr1 70750119 70750278 -211443386 + MIR SINE MIR 15 182 -80 183 42 0 0 chr1 70750279 70750303 -211443361 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2041 127 0 3 chr1 70750305 70750589 -211443075 - AluSq SINE Alu -28 285 3 312 265 128 41 chr1 70750612 70750955 -211442709 - L1MC5 LINE L1 -48 7913 7541 1935 164 0 6 chr1 70750962 70751273 -211442391 - AluSx SINE Alu -3 309 1 29 20 0 39 chr1 70751593 70751615 -211442049 + AT_rich Low_complexity Low_complexity 1 22 -27 842 161 60 24 chr1 70751615 70751783 -211441881 + FAM SINE Alu 1 174 -1 29 20 0 39 chr1 70751783 70751811 -211441853 + AT_rich Low_complexity Low_complexity 22 49 0 402 239 129 13 chr1 70751812 70751967 -211441697 - L1ME3A LINE L1 -10 6160 5988 395 83 17 0 chr1 70752080 70752140 -211441524 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 2265 101 10 7 chr1 70752140 70752448 -211441216 - AluSp SINE Alu -4 309 1 948 205 73 72 chr1 70753179 70753256 -211440408 - MER39 LTR ERV1 0 707 632 2306 104 0 0 chr1 70753256 70753554 -211440110 + AluSc SINE Alu 1 298 -11 948 205 73 72 chr1 70753554 70753915 -211439749 - MER39 LTR ERV1 -75 632 219 1068 181 0 0 chr1 70754021 70754192 -211439472 + AluJb SINE Alu 136 306 -6 378 0 0 0 chr1 70754321 70754363 -211439301 + (TG)n Simple_repeat Simple_repeat 1 42 0 358 308 28 14 chr1 70755132 70755275 -211438389 + MER5B DNA MER1_type 3 147 -31 1283 184 88 36 chr1 70755288 70755554 -211438110 - MER39 LTR ERV1 -3 704 416 2263 97 10 0 chr1 70755554 70755852 -211437812 - AluSx SINE Alu -11 301 1 1283 184 88 36 chr1 70755852 70755916 -211437748 - MER39 LTR ERV1 -291 416 357 440 260 79 8 chr1 70756035 70756162 -211437502 - MER39 LTR ERV1 -571 136 1 249 267 0 0 chr1 70756323 70756383 -211437281 + MIR SINE MIR 87 146 -62 535 113 0 0 chr1 70756747 70756827 -211436837 + MADE1 DNA Mariner 1 80 0 253 326 82 0 chr1 70757556 70757654 -211436010 - L2 LINE L2 -23 3290 3185 1526 173 24 0 chr1 70757726 70757975 -211435689 - AluJo SINE Alu -30 282 28 2050 128 3 7 chr1 70758048 70758345 -211435319 - AluSx SINE Alu -16 296 1 188 402 170 0 chr1 70758706 70758818 -211434846 + L2 LINE L2 3102 3232 -40 2189 113 0 3 chr1 70758914 70759206 -211434458 + AluSc SINE Alu 1 291 -18 670 103 132 0 chr1 70759314 70759450 -211434214 - L1MB3 LINE L1 0 6183 6030 276 306 90 15 chr1 70759893 70760027 -211433637 - MIR3 SINE MIR -56 152 9 330 177 0 4 chr1 70760039 70760114 -211433550 - Alu SINE Alu -249 53 1 1535 204 48 7 chr1 70760297 70760591 -211433073 - AluJo SINE Alu -6 306 1 378 263 50 77 chr1 70760643 70761229 -211432435 - L1M4 LINE L1 -2919 3227 2658 1994 141 0 0 chr1 70761800 70762108 -211431556 + AluSx SINE Alu 1 308 0 278 338 96 13 chr1 70763136 70763293 -211430371 - MIR SINE MIR -48 214 45 21 36 0 0 chr1 70763365 70763393 -211430271 + AT_rich Low_complexity Low_complexity 1 28 0 352 356 17 0 chr1 70763406 70763521 -211430143 + L2 LINE L2 3141 3257 -15 1067 161 6 17 chr1 70763775 70763949 -211429715 + FAM SINE Alu 1 172 -3 23 54 0 0 chr1 70764021 70764058 -211429606 + AT_rich Low_complexity Low_complexity 1 37 0 236 338 169 7 chr1 70764914 70765056 -211428608 - L2 LINE L2 0 3272 3108 333 0 0 0 chr1 70765066 70765103 -211428561 + (ATG)n Simple_repeat Simple_repeat 3 39 0 189 250 150 62 chr1 70765157 70765237 -211428427 - MIR SINE MIR -171 91 5 424 322 106 10 chr1 70765777 70765985 -211427679 - MIR SINE MIR -34 228 1 2386 102 0 0 chr1 70765998 70766301 -211427363 - AluSp SINE Alu -10 303 1 2689 220 105 17 chr1 70766819 70767532 -211426132 - MER21B LTR ERV1 -69 794 19 443 217 0 22 chr1 70767561 70767653 -211426011 - MER21B LTR ERV1 -773 90 1 208 303 0 0 chr1 70767987 70768053 -211425611 + MIR SINE MIR 88 153 -109 * 441 281 16 39 chr1 70768047 70768175 -211425489 - L2 LINE L2 0 3272 3148 2224 113 7 3 chr1 70768437 70768737 -211424927 - AluSq SINE Alu -12 301 1 211 333 38 38 chr1 70770085 70770190 -211423474 - MIR3 SINE MIR -23 185 81 2341 110 3 0 chr1 70770615 70770925 -211422739 - AluSx SINE Alu -1 311 1 351 0 0 0 chr1 70771669 70771708 -211421956 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 943 190 0 6 chr1 70771719 70771877 -211421787 - AluJo SINE Alu -31 281 125 287 44 110 0 chr1 70771877 70771968 -211421696 + (TA)n Simple_repeat Simple_repeat 2 102 0 2129 130 0 13 chr1 70771968 70772267 -211421397 - AluSx SINE Alu -17 295 1 771 203 0 21 chr1 70772267 70772410 -211421254 - AluJo SINE Alu -172 140 1 1942 140 0 0 chr1 70773302 70773573 -211420091 + AluSx SINE Alu 34 304 -8 2173 94 6 35 chr1 70773753 70774072 -211419592 - AluSx SINE Alu -2 310 1 7851 25 16 0 chr1 70774084 70775784 -211417880 - L1PA3 LINE L1 -3 6152 4437 222 385 28 0 chr1 70776041 70776150 -211417514 + MIR SINE MIR 29 140 -122 2437 90 0 7 chr1 70776308 70776618 -211417046 + AluSq SINE Alu 1 308 -5 189 341 89 55 chr1 70777749 70778165 -211415499 + L2 LINE L2 2825 3254 -18 319 219 7 0 chr1 70778447 70778524 -211415140 + MIR SINE MIR 64 144 -64 775 178 8 0 chr1 70779026 70779155 -211414509 - AluSg/x SINE Alu -18 292 163 512 93 0 27 chr1 70779149 70779224 -211414440 - AluY SINE Alu -226 92 20 * 1698 169 20 37 chr1 70779365 70779660 -211414004 + AluJo SINE Alu 1 290 -22 25 0 0 0 chr1 70779861 70779886 -211413778 + AT_rich Low_complexity Low_complexity 1 25 0 2040 124 0 7 chr1 70779972 70780299 -211413365 - AluSx SINE Alu 0 312 1 1797 157 74 6 chr1 70780678 70781003 -211412661 - MER7A DNA MER2_type 0 346 2 1188 212 76 17 chr1 70781530 70781832 -211411832 - MLT1A2 LTR MaLR -54 320 1 1797 148 30 0 chr1 70782363 70782660 -211411004 + AluJb SINE Alu 6 310 0 4325 132 48 16 chr1 70783129 70783686 -211409978 - Tigger1 DNA MER2_type 0 2418 1827 2350 95 13 0 chr1 70783686 70783992 -211409672 + AluSg SINE Alu 1 310 0 4325 132 48 16 chr1 70783992 70784221 -211409443 - Tigger1 DNA MER2_type -591 1827 1607 1965 103 16 9 chr1 70784280 70784594 -211409070 - L1MA4 LINE L1 -130 6033 5728 790 97 0 0 chr1 70784594 70784697 -211408967 - THE1C LTR MaLR -58 317 215 * 5843 126 45 12 chr1 70784685 70785609 -211408055 - Tigger1 DNA MER2_type -1409 1009 55 927 209 11 0 chr1 70785761 70785938 -211407726 + AluJb SINE Alu 134 312 0 217 292 267 0 chr1 70786181 70786301 -211407363 + MIR SINE MIR 88 239 -23 2152 129 0 0 chr1 70787663 70787957 -211405707 - AluSx SINE Alu -18 294 1 1544 176 22 22 chr1 70787966 70788239 -211405425 - AluJo SINE Alu -39 273 1 256 223 187 36 chr1 70788328 70788438 -211405226 - L1ME4a LINE L1 -205 5916 5779 2004 164 0 0 chr1 70788438 70788750 -211404914 - AluJb SINE Alu 0 312 1 256 223 187 36 chr1 70788750 70788778 -211404886 - L1ME4a LINE L1 -342 5779 5757 2323 82 0 13 chr1 70788902 70789206 -211404458 + AluSx SINE Alu 2 301 -11 385 200 59 0 chr1 70789290 70789375 -211404289 - MIR SINE MIR -63 199 110 1094 145 0 0 chr1 70789436 70789595 -211404069 - AluSg/x SINE Alu -32 278 120 384 176 0 0 chr1 70789598 70789666 -211403998 - AluS SINE Alu 0 300 233 799 110 9 9 chr1 70789666 70789775 -211403889 - AluJb SINE Alu -126 186 78 1189 142 71 5 chr1 70789775 70789972 -211403692 - AluSx SINE Alu -100 212 3 1879 119 0 0 chr1 70791052 70791312 -211402352 + AluSg SINE Alu 36 295 -15 2109 127 6 25 chr1 70791325 70791641 -211402023 + AluSx SINE Alu 1 310 -2 359 286 91 13 chr1 70792450 70792669 -211400995 + MIR SINE MIR 30 262 0 180 209 93 0 chr1 70792747 70792790 -211400874 + MIR SINE MIR 32 78 -130 1993 105 30 24 chr1 70792846 70793142 -211400522 + AluSx SINE Alu 1 298 -14 1781 94 101 29 chr1 70793142 70793418 -211400246 + AluSg SINE Alu 1 296 -14 2001 126 7 3 chr1 70793770 70794063 -211399601 + AluJo SINE Alu 1 294 -18 191 340 7 76 chr1 70794306 70794450 -211399214 + L3b LINE CR1 1116 1249 -334 1951 166 60 23 chr1 70794641 70794698 -211398966 - MLT1A1 LTR MaLR -2 363 310 222 37 0 0 chr1 70794698 70794725 -211398939 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1967 129 3 11 chr1 70794725 70795011 -211398653 - AluSx SINE Alu -28 284 1 1951 166 60 23 chr1 70795011 70795302 -211398362 - MLT1A1 LTR MaLR -54 311 1 191 271 21 0 chr1 70795330 70795378 -211398286 + L2 LINE L2 3220 3268 -4 2371 94 0 0 chr1 70796891 70797190 -211396474 + AluSq SINE Alu 1 299 -14 234 315 179 76 chr1 70797287 70797538 -211396126 - L2 LINE L2 0 3272 2996 3023 187 10 13 chr1 70797696 70798301 -211395363 - L1P LINE L1 -2109 4037 3435 531 0 0 0 chr1 70798541 70798600 -211395064 + (CA)n Simple_repeat Simple_repeat 2 60 0 267 307 59 10 chr1 70798874 70798975 -211394689 + LTR67 LTR ERVL 429 534 -23 1897 148 0 7 chr1 70799422 70799729 -211393935 + AluSx SINE Alu 1 305 0 318 26 0 0 chr1 70800346 70800385 -211393279 + (TG)n Simple_repeat Simple_repeat 2 40 0 785 163 0 13 chr1 70800688 70800844 -211392820 + L1M3 LINE L1 5592 5741 -430 5437 161 12 18 chr1 70800851 70802079 -211391585 - L1MB3 LINE L1 -21 6162 4942 819 197 0 0 chr1 70802100 70802242 -211391422 - FAM SINE Alu -34 151 10 580 209 0 43 chr1 70802254 70802378 -211391286 - L1M4 LINE L1 -1187 4959 4841 1678 186 0 16 chr1 70802384 70802691 -211390973 + AluJo SINE Alu 5 306 -6 962 147 0 51 chr1 70802691 70802848 -211390816 + AluJo/FRAM SINE Alu 137 285 -27 297 0 0 0 chr1 70802848 70802881 -211390783 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1024 197 0 5 chr1 70802890 70803088 -211390576 - L1M4 LINE L1 -1311 4835 4639 1930 206 40 11 chr1 70804402 70804858 -211388806 - L1ME2 LINE L1 -1 6163 5695 565 195 60 112 chr1 70804903 70805154 -211388510 - MLT1I LTR MaLR -6 403 166 23 0 0 0 chr1 70805428 70805451 -211388213 + AT_rich Low_complexity Low_complexity 1 23 0 713 228 84 76 chr1 70805555 70805805 -211387859 + MIR SINE MIR 1 252 -10 1279 228 149 15 chr1 70805859 70806188 -211387476 - MLT1E2 LTR MaLR 0 626 254 310 196 239 17 chr1 70806285 70806455 -211387209 - MLT1E2 LTR MaLR -381 273 1 2347 118 44 16 chr1 70806629 70806994 -211386670 - THE1C LTR MaLR 0 375 1 279 286 163 34 chr1 70807691 70807838 -211385826 - L2 LINE L2 -5 3267 3102 2158 120 0 0 chr1 70808046 70808346 -211385318 + AluSx SINE Alu 3 302 -10 183 370 0 12 chr1 70808382 70808463 -211385201 - L3 LINE CR1 -3 1574 1495 360 238 60 12 chr1 70809355 70809439 -211384225 - MIR SINE MIR -80 128 41 421 344 58 61 chr1 70809509 70810030 -211383634 - L2 LINE L2 -9 3263 2740 4470 121 42 60 chr1 70860099 70860287 -211333377 - L1PA16 LINE L1 -10 6156 5966 2309 113 0 0 chr1 70860287 70860588 -211333076 - AluSq SINE Alu -12 301 1 4470 121 42 60 chr1 70860588 70860775 -211332889 - L1PA16 LINE L1 -200 5966 5777 2410 67 0 0 chr1 70860775 70861060 -211332604 - AluY SINE Alu -21 290 6 4470 121 42 60 chr1 70861060 70861502 -211332162 - L1PA16 LINE L1 -389 5777 5353 558 158 0 0 chr1 70861502 70861597 -211332067 - AluJ/FRAM SINE Alu 0 312 218 1745 162 17 10 chr1 70861597 70861894 -211331770 - AluJo SINE Alu -4 308 10 6870 197 19 12 chr1 70861900 70863376 -211330288 - L1 LINE L1 -780 5366 3881 2017 114 17 23 chr1 70863434 70863733 -211329931 - AluSx SINE Alu -15 297 1 2054 122 14 3 chr1 70864560 70864847 -211328817 + AluSx SINE Alu 1 290 -22 234 283 152 11 chr1 70865281 70865373 -211328291 - L2 LINE L2 -12 3301 3197 342 215 215 37 chr1 70865409 70865516 -211328148 - MIR SINE MIR -22 240 115 1003 181 0 0 chr1 70865619 70865779 -211327885 - AluJb SINE Alu -16 296 137 1983 164 106 129 chr1 70865876 70866348 -211327316 - LTR8A LTR ERV1 -17 710 259 2428 93 0 3 chr1 70866348 70866658 -211327006 - AluY SINE Alu -2 309 1 1983 164 106 129 chr1 70866658 70866912 -211326752 - LTR8A LTR ERV1 -468 259 1 1924 139 21 0 chr1 70867038 70867326 -211326338 - AluJb SINE Alu -18 294 1 281 308 0 0 chr1 70867451 70867529 -211326135 - MLT1K LTR MaLR 0 588 511 222 62 0 0 chr1 70867541 70867573 -211326091 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 314 303 0 0 chr1 70867800 70867876 -211325788 - MLT1K LTR MaLR -358 230 155 299 210 244 34 chr1 70868469 70868588 -211325076 + MIR SINE MIR 17 160 -102 227 226 170 63 chr1 70868914 70869073 -211324591 + L2 LINE L2 3130 3305 -8 221 258 40 5 chr1 70869152 70869218 -211324446 - MIR SINE MIR -123 85 19 440 243 28 111 chr1 70870564 70870723 -211322941 - MIR SINE MIR -26 236 92 2194 84 40 20 chr1 70870723 70871019 -211322645 - AluSx SINE Alu -10 302 1 440 243 28 111 chr1 70871019 70871077 -211322587 - MIR SINE MIR -170 92 31 1803 155 14 14 chr1 70871700 70871997 -211321667 + 7SLRNA srpRNA srpRNA 23 319 -1 1694 155 10 45 chr1 70872573 70872892 -211320772 + AluSx SINE Alu 1 309 0 785 203 0 0 chr1 70872941 70873064 -211320600 + FLAM_A SINE Alu 1 123 -10 1441 19 0 0 chr1 70873443 70873600 -211320064 + L1PA4 LINE L1 5996 6152 -3 867 215 0 13 chr1 70873672 70873830 -211319834 - FRAM SINE Alu -20 156 1 23 0 0 0 chr1 70873831 70873854 -211319810 + AT_rich Low_complexity Low_complexity 1 23 0 2186 125 0 0 chr1 70873914 70874218 -211319446 + AluSx SINE Alu 1 304 -8 194 303 61 0 chr1 70874269 70874335 -211319329 - MIR3 SINE MIR -6 202 133 567 309 45 29 chr1 70874348 70874591 -211319073 + L3 LINE CR1 1254 1500 -77 308 274 195 12 chr1 70874603 70874767 -211318897 - MIR SINE MIR -2 260 67 2455 66 0 10 chr1 70874869 70875159 -211318505 + AluY SINE Alu 1 289 -22 189 0 0 0 chr1 70875159 70875180 -211318484 + (CATA)n Simple_repeat Simple_repeat 2 22 0 313 325 57 41 chr1 70875448 70875642 -211318022 - MIR SINE MIR -12 250 54 1884 154 10 3 chr1 70875744 70876043 -211317621 - AluJo SINE Alu -11 301 1 811 256 64 74 chr1 70876190 70876502 -211317162 + MLT1J LTR MaLR 99 407 -104 430 228 26 18 chr1 70877077 70877191 -211316473 + MER5B DNA MER1_type 3 117 -61 1887 156 0 0 chr1 70877321 70877597 -211316067 - AluJo SINE Alu -31 281 6 236 283 67 0 chr1 70877602 70877662 -211316002 - L2 LINE L2 -21 3292 3229 287 331 70 45 chr1 70877716 70877873 -211315791 + MIR SINE MIR 22 182 -80 578 304 52 13 chr1 70877969 70878199 -211315465 + MIR SINE MIR 5 243 -19 241 91 91 0 chr1 70878314 70878358 -211315306 - L1MA8 LINE L1 -8 6283 6236 1527 183 25 14 chr1 70878396 70878681 -211314983 - AluJb SINE Alu -24 288 1 1531 136 73 41 chr1 70878681 70878997 -211314667 - L1MA8 LINE L1 -47 6244 5919 250 400 120 7 chr1 70879029 70879179 -211314485 - L2 LINE L2 -560 2754 2588 2412 81 0 10 chr1 70879589 70879898 -211313766 + AluSq SINE Alu 1 306 -7 1821 161 14 3 chr1 70880572 70880864 -211312800 + AluJb SINE Alu 1 295 -17 269 106 0 21 chr1 70880864 70880911 -211312753 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 2151 90 24 7 chr1 70881915 70882203 -211311461 - AluSg SINE Alu -17 293 1 317 308 58 26 chr1 70882694 70882850 -211310814 + MIR SINE MIR 47 207 -55 2457 93 3 0 chr1 70882918 70883229 -211310435 + AluSx SINE Alu 1 312 0 471 275 41 87 chr1 70883282 70883403 -211310261 - MIR SINE MIR -32 230 122 1331 150 66 26 chr1 70883403 70883630 -211310034 + MER46A DNA MER2_type 1 236 0 471 275 41 87 chr1 70883630 70883726 -211309938 - MIR SINE MIR -140 122 23 342 0 0 0 chr1 70883897 70883935 -211309729 + (CA)n Simple_repeat Simple_repeat 1 38 0 269 303 109 23 chr1 70883942 70884117 -211309547 - L1MC/D LINE L1 -2233 5575 5386 1748 131 11 8 chr1 70884524 70884792 -211308872 + AluSx SINE Alu 35 303 -9 39 38 0 0 chr1 70884795 70884848 -211308816 + AT_rich Low_complexity Low_complexity 1 53 0 584 276 87 85 chr1 70884918 70885493 -211308171 - MLT1L LTR MaLR -4 611 36 2131 116 0 52 chr1 70885952 70886281 -211307383 - AluSx SINE Alu 0 312 1 386 256 114 20 chr1 70886498 70886698 -211306966 - MIR SINE MIR -10 252 16 21 0 0 0 chr1 70887093 70887114 -211306550 + AT_rich Low_complexity Low_complexity 1 21 0 2371 91 0 10 chr1 70887114 70887422 -211306242 + AluSp SINE Alu 1 305 -8 2383 78 3 0 chr1 70888092 70888385 -211305279 + AluSp SINE Alu 1 294 -19 267 286 89 4 chr1 70888389 70888529 -211305135 + MIR SINE MIR 90 249 -13 449 169 136 34 chr1 70888533 70888651 -211305013 - L2 LINE L2 -1 3312 3183 360 81 290 0 chr1 70888686 70888748 -211304916 - MER116 DNA Mariner 0 80 1 1208 179 4 44 chr1 70888801 70889030 -211304634 + AluJb SINE Alu 76 295 -17 2310 95 0 0 chr1 70889494 70889790 -211303874 + AluSc SINE Alu 2 297 -12 606 279 0 7 chr1 70890120 70890256 -211303408 + MIR SINE MIR 19 153 -109 2905 183 26 4 chr1 70890472 70890976 -211302688 - MLT2B2 LTR ERVL 0 515 1 236 270 153 9 chr1 70890984 70891095 -211302569 - MIR SINE MIR -42 220 94 1050 179 0 0 chr1 70891100 70891256 -211302408 + FRAM SINE Alu 1 156 -10 1785 128 4 0 chr1 70891261 70891511 -211302153 + AluSq SINE Alu 45 295 -18 1796 136 20 20 chr1 70891552 70891846 -211301818 - AluSx SINE Alu -18 294 1 22 35 0 0 chr1 70893088 70893117 -211300547 + AT_rich Low_complexity Low_complexity 1 29 0 326 315 73 18 chr1 70893241 70893406 -211300258 + MIR SINE MIR 89 262 0 489 318 61 0 chr1 70893562 70893710 -211299954 + Charlie8 DNA MER1_type 1 157 -2260 258 351 82 12 chr1 70893879 70894050 -211299614 - L2 LINE L2 -461 2853 2671 2070 127 17 0 chr1 70894058 70894349 -211299315 + AluSx SINE Alu 1 296 -16 448 388 26 16 chr1 70894411 70894718 -211298946 - L2 LINE L2 -640 2674 2365 230 337 102 0 chr1 70894934 70895032 -211298632 - MIR SINE MIR -105 157 50 1308 157 5 14 chr1 70895076 70895292 -211298372 - AluJo SINE Alu -3 309 96 309 100 67 0 chr1 70896405 70896495 -211297169 + (TA)n Simple_repeat Simple_repeat 2 97 0 189 333 48 0 chr1 70896512 70896596 -211297068 - MIR SINE MIR -73 189 102 289 271 225 0 chr1 70896609 70896760 -211296904 - MIR SINE MIR -24 238 54 2491 67 3 0 chr1 70897102 70897399 -211296265 + AluSp SINE Alu 1 298 -15 2708 178 234 62 chr1 70897699 70898569 -211295095 + LTR28 LTR ERV1 1 1020 0 258 32 0 0 chr1 70899033 70899064 -211294600 + (CA)n Simple_repeat Simple_repeat 2 32 0 939 129 0 50 chr1 70899179 70899318 -211294346 + FLAM_C SINE Alu 1 132 -1 1632 114 15 49 chr1 70899450 70899714 -211293950 - AluJo SINE Alu -11 301 47 197 289 0 19 chr1 70899790 70899842 -211293822 - MIR SINE MIR -13 249 199 813 145 0 16 chr1 70899930 70900054 -211293610 - AluJb SINE Alu -21 291 170 2030 109 0 0 chr1 70900057 70900313 -211293351 - AluSq SINE Alu -57 256 1 1157 236 87 16 chr1 70900532 70900842 -211292822 + MER58B DNA MER1_type 5 336 -5 233 57 29 0 chr1 70900939 70900974 -211292690 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 2203 103 3 0 chr1 70901239 70901548 -211292116 - AluSq SINE Alu 0 310 1 496 254 18 0 chr1 70901930 70902040 -211291624 - MER58B DNA MER1_type -6 335 224 1311 245 14 0 chr1 70902434 70902716 -211290948 - MER58B DNA MER1_type 0 341 56 2068 93 17 28 chr1 70903015 70903305 -211290359 - AluSq SINE Alu -26 287 1 2239 123 0 0 chr1 70903847 70904149 -211289515 + AluSx SINE Alu 1 302 -10 1072 176 0 45 chr1 70904712 70904911 -211288753 + AluJo SINE Alu 2 191 -121 1121 156 6 6 chr1 70905228 70905407 -211288257 + AluSg/x SINE Alu 84 262 -48 383 246 109 29 chr1 70905410 70905548 -211288116 + HAL1 LINE L1 2337 2485 -22 1988 134 7 10 chr1 70905548 70905847 -211287817 + AluJb SINE Alu 1 298 -14 266 267 58 0 chr1 70906002 70906088 -211287576 + HAL1 LINE L1 2245 2335 -172 2072 133 10 0 chr1 70906229 70906530 -211287134 + AluSx SINE Alu 1 304 -8 465 240 164 70 chr1 70906581 70906675 -211286989 - MER5A DNA MER1_type -2 187 103 2252 87 10 3 chr1 70906675 70906975 -211286689 - AluSq SINE Alu -11 302 1 465 240 164 70 chr1 70906975 70907051 -211286613 - MER5A DNA MER1_type -86 103 1 635 136 169 42 chr1 70907137 70907255 -211286409 - FLAM_C SINE Alu 0 133 1 2438 83 3 6 chr1 70907260 70907574 -211286090 - AluSq SINE Alu 0 313 1 1442 124 0 0 chr1 70907990 70908184 -211285480 - AluSq SINE Alu -118 195 2 2007 130 3 3 chr1 70908196 70908512 -211285152 - AluSx SINE Alu 0 316 1 1587 199 7 4 chr1 70909582 70909863 -211283801 + AluJb SINE Alu 1 282 -30 812 144 0 53 chr1 70909873 70910005 -211283659 - AluJo SINE Alu -178 134 10 459 0 0 0 chr1 70910028 70910079 -211283585 + (CA)n Simple_repeat Simple_repeat 2 52 0 2708 194 64 75 chr1 70911195 70911850 -211281814 + MER82 DNA MER2_type 2 649 -4 2194 77 0 4 chr1 70912114 70912386 -211281278 - AluSx SINE Alu -41 271 1 457 261 51 64 chr1 70912451 70912692 -211280972 - MIR SINE MIR -19 243 3 1153 209 58 74 chr1 70912846 70913223 -211280441 + MLT1H LTR MaLR 146 516 -33 242 222 19 0 chr1 70913402 70913456 -211280208 - MIR3 SINE MIR -3 205 151 597 156 0 0 chr1 70913457 70913547 -211280117 + AluS SINE Alu 2 91 -222 2472 93 0 0 chr1 70913548 70913858 -211279806 + AluY SINE Alu 2 311 0 1522 143 0 5 chr1 70913860 70914077 -211279587 + AluSc SINE Alu 77 292 -17 24 0 0 0 chr1 70914335 70914359 -211279305 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr1 70914817 70914847 -211278817 + (T)n Simple_repeat Simple_repeat 1 30 0 1954 182 79 11 chr1 70915705 70916073 -211277591 - MSTD LTR MaLR 0 396 4 234 234 0 0 chr1 70916173 70916220 -211277444 - L2 LINE L2 -3 3310 3264 2314 113 3 0 chr1 70916721 70917032 -211276632 - AluSx SINE Alu 0 312 1 1831 174 0 0 chr1 70917366 70917683 -211275981 + AluJo SINE Alu 1 317 0 2037 125 3 34 chr1 70918037 70918358 -211275306 + AluJb SINE Alu 1 311 -1 478 302 65 9 chr1 70918679 70918894 -211274770 + MIR SINE MIR 7 233 -29 2086 135 0 13 chr1 70918940 70919243 -211274421 + AluSx SINE Alu 1 299 -13 351 297 84 19 chr1 70919285 70919440 -211274224 - MIR SINE MIR -89 173 9 2250 80 9 62 chr1 70920135 70920459 -211273205 - AluSx SINE Alu -5 307 1 697 120 137 0 chr1 70921415 70921532 -211272132 + FLAM_A SINE Alu 1 133 0 417 70 0 0 chr1 70921538 70921549 -211272115 + (CA)n Simple_repeat Simple_repeat 1 68 0 417 70 0 0 chr1 70921549 70921606 -211272058 + (CA)n Simple_repeat Simple_repeat 2 58 0 1773 172 0 3 chr1 70921657 70921948 -211271716 + AluJo SINE Alu 1 290 -22 2442 68 3 0 chr1 70922494 70922787 -211270877 + AluY SINE Alu 1 294 -17 347 265 120 8 chr1 70923293 70923410 -211270254 - MIR SINE MIR -108 154 25 201 135 54 0 chr1 70924316 70924353 -211269311 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 654 158 0 45 chr1 70925258 70925391 -211268273 + L1MA10 LINE L1 6204 6330 -4 497 288 91 30 chr1 70926932 70927130 -211266534 - MIR SINE MIR -28 234 25 2316 97 0 3 chr1 70927130 70927429 -211266235 - AluSg SINE Alu -12 298 1 187 195 49 0 chr1 70927577 70927618 -211266046 + L2 LINE L2 3016 3058 -214 248 362 64 0 chr1 70927665 70927694 -211265970 - MIR3 SINE MIR -14 194 168 2222 110 0 3 chr1 70927694 70927995 -211265669 + AluSx SINE Alu 1 300 -12 248 362 64 0 chr1 70927995 70928106 -211265558 - MIR3 SINE MIR -40 168 45 788 257 15 10 chr1 70928335 70928541 -211265123 + MIR SINE MIR 12 218 -44 203 222 37 0 chr1 70928585 70928639 -211265025 - MIR SINE MIR -111 151 96 1718 187 3 3 chr1 70928826 70929126 -211264538 + AluJb SINE Alu 1 300 -12 973 156 78 30 chr1 70930229 70930396 -211263268 + FAM SINE Alu 1 175 0 2311 108 0 7 chr1 70930498 70930805 -211262859 + AluSq SINE Alu 2 306 -7 798 172 16 0 chr1 70930822 70930944 -211262720 + FLAM_C SINE Alu 1 124 -9 565 204 225 5 chr1 70931659 70931850 -211261814 + L1MC4a LINE L1 5613 5845 -1963 249 356 0 11 chr1 70933929 70934016 -211259648 - L2 LINE L2 -290 2982 2897 2092 108 0 7 chr1 70934095 70934403 -211259261 - AluSx SINE Alu 0 306 1 2004 108 18 14 chr1 70935131 70935417 -211258247 + AluSx SINE Alu 1 287 -25 322 246 35 58 chr1 70935613 70935784 -211257880 + L1MC4 LINE L1 7867 8033 -9 2145 96 3 32 chr1 70936954 70937266 -211256398 + AluSx SINE Alu 1 303 -9 2228 99 0 0 chr1 70937557 70937860 -211255804 + AluSx SINE Alu 1 303 -9 2244 88 3 0 chr1 70938017 70938312 -211255352 + AluSx SINE Alu 1 296 -16 28 0 0 0 chr1 70938443 70938471 -211255193 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 70938769 70938794 -211254870 + AT_rich Low_complexity Low_complexity 1 25 0 549 246 54 88 chr1 70938866 70938940 -211254724 - L1ME4a LINE L1 -280 5841 5766 2481 64 0 0 chr1 70938940 70939251 -211254413 - AluY SINE Alu 0 311 1 549 246 54 88 chr1 70939251 70939473 -211254191 - L1ME4a LINE L1 -355 5766 5555 1951 144 7 0 chr1 70939552 70939857 -211253807 - AluSx SINE Alu -5 307 1 1832 165 65 52 chr1 70940025 70940407 -211253257 - MLT1B LTR MaLR 0 390 4 2073 112 3 37 chr1 70940419 70940742 -211252922 + AluJb SINE Alu 1 312 0 508 266 0 58 chr1 70940781 70940935 -211252729 + MIR SINE MIR 118 262 0 1991 139 0 3 chr1 70941242 70941545 -211252119 - AluSx SINE Alu -10 302 1 371 308 117 58 chr1 70941551 70941980 -211251684 - L1ME LINE L1 -5611 459 6 189 0 0 0 chr1 70942310 70942331 -211251333 + (TG)n Simple_repeat Simple_repeat 2 22 0 555 255 104 35 chr1 70942354 70942478 -211251186 - MIR SINE MIR -14 248 134 2702 123 39 25 chr1 70942478 70942916 -211250748 - MER65A LTR ERV1 -1 444 1 555 255 104 35 chr1 70942916 70942968 -211250696 - MIR SINE MIR -128 134 87 1972 115 24 3 chr1 70942968 70943255 -211250409 + AluSq SINE Alu 1 293 -20 555 255 104 35 chr1 70943255 70943308 -211250356 - MIR SINE MIR -175 87 2 2081 104 14 0 chr1 70945103 70945400 -211248264 + AluSx SINE Alu 1 301 -11 1717 159 10 7 chr1 70945497 70945792 -211247872 + AluJo SINE Alu 1 296 -16 862 124 0 22 chr1 70945827 70945964 -211247700 + AluJb SINE Alu 1 134 -178 36 23 0 0 chr1 70945964 70946007 -211247657 + AT_rich Low_complexity Low_complexity 1 43 0 1077 55 0 0 chr1 70946015 70946142 -211247522 + AluSc SINE Alu 2 128 -181 370 102 0 22 chr1 70946265 70946331 -211247333 - Alu SINE Alu -260 48 2 283 346 93 0 chr1 70946332 70946439 -211247225 + L2 LINE L2 2958 3074 -198 2068 127 0 13 chr1 70946501 70946809 -211246855 + AluSx SINE Alu 1 304 -8 293 200 0 0 chr1 70946876 70946931 -211246733 + L1MB2 LINE L1 5537 5591 -580 825 253 6 0 chr1 70946931 70947105 -211246559 + AluJb SINE Alu 119 293 -19 2201 108 0 7 chr1 70947134 70947441 -211246223 + AluSq SINE Alu 3 307 -6 2339 156 80 46 chr1 70947441 70947765 -211245899 + L1MB2 LINE L1 5614 5962 -209 1955 134 0 7 chr1 70947765 70948064 -211245600 + AluSx SINE Alu 5 301 -11 2339 156 80 46 chr1 70948064 70948239 -211245425 + L1MB2 LINE L1 5962 6130 -41 2697 23 0 0 chr1 70948250 70948559 -211245105 + AluYb8 SINE Alu 10 318 0 1293 62 0 0 chr1 70948559 70948720 -211244944 + AluY SINE Alu 133 293 -18 560 144 10 10 chr1 70948879 70948976 -211244688 + AluSg SINE Alu 3 99 -211 213 215 46 23 chr1 70949229 70949295 -211244369 + (TA)n Simple_repeat Simple_repeat 2 65 -69 2060 93 21 0 chr1 70949295 70949575 -211244089 - AluSq SINE Alu -27 286 1 213 215 46 23 chr1 70949575 70949638 -211244026 + (TA)n Simple_repeat Simple_repeat 65 134 0 232 284 77 32 chr1 70949638 70949793 -211243871 - L1ME LINE L1 -346 5816 5655 1883 134 13 16 chr1 70950019 70950333 -211243331 - AluSq SINE Alu 0 313 1 431 234 120 40 chr1 70950644 70950965 -211242699 - L1MC4 LINE L1 -66 7976 7509 449 118 0 0 chr1 70951118 70951186 -211242478 + AluS SINE Alu 2 69 -243 1827 126 10 14 chr1 70951286 70951580 -211242084 - AluSc SINE Alu -16 293 1 23 0 0 0 chr1 70951686 70951709 -211241955 + AT_rich Low_complexity Low_complexity 1 23 0 2034 110 24 0 chr1 70951730 70952020 -211241644 - AluSg SINE Alu -10 300 4 1681 175 20 0 chr1 70952630 70952927 -211240737 + AluJb SINE Alu 3 305 -7 206 304 61 17 chr1 70952956 70953071 -211240593 + L2 LINE L2 2766 2885 -429 1979 136 7 0 chr1 70953249 70953559 -211240105 - AluSq SINE Alu -1 312 1 1860 119 22 7 chr1 70953573 70953875 -211239789 - AluSp SINE Alu 0 306 1 858 189 24 12 chr1 70953883 70954047 -211239617 - FAM SINE Alu -9 166 1 1969 137 7 0 chr1 70954062 70954361 -211239303 - AluSx SINE Alu -10 302 2 1942 96 28 7 chr1 70954696 70954987 -211238677 + AluSx SINE Alu 5 301 -11 480 262 76 35 chr1 70955015 70955160 -211238504 + MER5B DNA MER1_type 1 151 -27 3432 210 26 48 chr1 70955195 70956185 -211237479 - LTR5 LTR ERVK 0 969 1 2196 72 33 10 chr1 70956190 70956494 -211237170 - AluSp SINE Alu -2 311 1 2353 70 0 3 chr1 70957245 70957544 -211236120 + AluY SINE Alu 1 298 -13 1834 130 0 29 chr1 70957565 70957881 -211235783 - AluSq SINE Alu -6 307 1 229 316 86 34 chr1 70958396 70958513 -211235151 + L2 LINE L2 3150 3272 0 585 275 63 19 chr1 70958615 70958822 -211234842 + MIR SINE MIR 31 246 -16 822 146 8 0 chr1 70958871 70959010 -211234654 + L1M4 LINE L1 5662 5802 -363 2369 108 19 34 chr1 70959072 70959450 -211234214 + L1PB3 LINE L1 5783 6154 0 275 243 37 77 chr1 70960494 70960557 -211233107 + MIR SINE MIR 12 76 -134 2080 92 26 7 chr1 70960557 70960863 -211232801 + AluSp SINE Alu 1 312 -1 275 243 37 77 chr1 70960863 70960946 -211232718 + MIR SINE MIR 76 149 -61 2057 114 3 0 chr1 70961262 70961551 -211232113 - AluSx SINE Alu -22 290 1 1922 139 3 7 chr1 70961653 70961962 -211231702 - AluJb SINE Alu -4 308 1 418 257 156 17 chr1 70962313 70962492 -211231172 - MIR3 SINE MIR -2 206 3 217 193 32 86 chr1 70962761 70962948 -211230716 + (CACAC)n Simple_repeat Simple_repeat 1 177 0 1410 134 157 15 chr1 70963410 70963671 -211229993 - AluY SINE Alu -3 298 1 249 252 17 26 chr1 70963714 70963829 -211229835 - AluSp/q SINE Alu -13 290 177 467 342 43 7 chr1 70965140 70965418 -211228246 + MER1B DNA MER1_type 2 289 -50 1118 130 0 0 chr1 70966160 70966322 -211227342 + AluSp SINE Alu 132 293 -20 725 181 16 0 chr1 70966334 70966461 -211227203 + FRAM SINE Alu 30 158 -18 22 0 0 0 chr1 70966634 70966656 -211227008 + GC_rich Low_complexity Low_complexity 1 22 0 1587 151 11 11 chr1 70966879 70967158 -211226506 - AluJb SINE Alu -33 279 1 365 246 109 29 chr1 70967158 70967296 -211226368 - HAL1 LINE L1 -22 2485 2337 1067 156 6 6 chr1 70967299 70967478 -211226186 - AluSg/x SINE Alu -48 264 86 354 248 117 0 chr1 70967478 70967623 -211226041 - HAL1 LINE L1 -159 2348 2187 784 280 9 5 chr1 70968572 70968786 -211224878 - AluSq SINE Alu -96 217 3 360 225 169 38 chr1 70968897 70969000 -211224664 + Charlie4a DNA MER1_type 149 237 -1724 2007 113 7 3 chr1 70969000 70969293 -211224371 + AluSx SINE Alu 1 294 -18 288 0 0 0 chr1 70969294 70969326 -211224338 + (TA)n Simple_repeat Simple_repeat 1 32 0 360 225 169 38 chr1 70969326 70969380 -211224284 + Charlie4a DNA MER1_type 236 329 -179 664 150 71 0 chr1 70969405 70969518 -211224146 - FLAM_C SINE Alu -10 123 3 1845 109 18 4 chr1 70969518 70969792 -211223872 + AluSx SINE Alu 30 307 -5 374 279 82 14 chr1 70970068 70970215 -211223449 + AluJb SINE Alu 134 290 -12 35 0 0 0 chr1 70970471 70970506 -211223158 + GC_rich Low_complexity Low_complexity 1 35 0 1045 144 6 0 chr1 70970642 70970802 -211222862 - AluSx SINE Alu -151 161 1 1739 167 3 3 chr1 70970805 70971099 -211222565 - AluJo SINE Alu -17 295 2 2049 123 3 0 chr1 70971127 70971419 -211222245 + AluSq SINE Alu 1 293 -20 2326 76 0 10 chr1 70971419 70971723 -211221941 + AluY SINE Alu 1 301 -10 296 248 90 35 chr1 70971886 70972031 -211221633 + L1ME LINE L1 5501 5653 -468 1791 116 47 14 chr1 70972178 70972455 -211221209 + AluSx SINE Alu 1 286 -26 335 85 38 113 chr1 70972786 70972892 -211220772 + AluSg/x SINE Alu 170 267 -33 1054 177 0 0 chr1 70972912 70973087 -211220577 + AluJb SINE Alu 120 294 -18 204 97 0 0 chr1 70973104 70973135 -211220529 + (CA)n Simple_repeat Simple_repeat 2 32 0 183 277 0 0 chr1 70973220 70973267 -211220397 - MIR SINE MIR -56 206 160 1334 76 52 48 chr1 70973293 70973503 -211220161 - AluSq SINE Alu -14 299 89 249 240 0 0 chr1 70973708 70973783 -211219881 + T-rich Low_complexity Low_complexity 1 75 0 1057 148 0 6 chr1 70974298 70974474 -211219190 - AluSg/x SINE Alu -1 311 137 185 305 75 48 chr1 70974533 70974720 -211218944 + L2 LINE L2 2992 3183 -89 1798 143 0 0 chr1 70974845 70975110 -211218554 - AluSx SINE Alu -46 266 2 353 283 67 119 chr1 70975148 70975519 -211218145 + L2 LINE L2 2914 3265 -7 1804 94 47 4 chr1 70975757 70976012 -211217652 + LTR8 LTR ERV1 1 266 -425 1459 81 0 14 chr1 70976214 70976424 -211217240 - AluY SINE Alu -104 207 1 1879 101 0 30 chr1 70976424 70976684 -211216980 + LTR35 LTR ERV1 166 419 -199 566 179 9 36 chr1 70976717 70976829 -211216835 + LTR35 LTR ERV1 510 618 0 247 158 11 116 chr1 70976842 70976891 -211216773 - L1MC5 LINE L1 -263 7698 7662 2193 57 0 13 chr1 70976891 70977191 -211216473 - AluY SINE Alu -15 296 1 247 158 11 116 chr1 70977191 70977236 -211216428 - L1MC5 LINE L1 -299 7662 7614 2032 120 0 23 chr1 70977236 70977545 -211216119 - AluSx SINE Alu -8 304 3 469 139 0 0 chr1 70977545 70977624 -211216040 - AluJ/FRAM SINE Alu -6 306 228 3583 89 34 77 chr1 70977625 70978212 -211215452 - LTR8 LTR ERV1 -8 683 122 380 94 0 19 chr1 70978197 70978250 -211215414 - AluJ/FLAM SINE Alu -235 67 16 * 199 233 47 24 chr1 70978333 70978389 -211215275 + MIR SINE MIR 63 121 -87 219 242 94 55 chr1 70978464 70978592 -211215072 - L2 LINE L2 -189 3124 2992 333 129 3 18 chr1 70978607 70978672 -211214992 + Alu SINE Alu 1 51 -249 1623 157 4 4 chr1 70978805 70979100 -211214564 + AluJb SINE Alu 16 310 0 2208 89 0 17 chr1 70979267 70979569 -211214095 + AluSx SINE Alu 1 297 -15 203 331 31 47 chr1 70979718 70979845 -211213819 + MIR SINE MIR 117 241 -21 2236 94 3 19 chr1 70980046 70980364 -211213300 - AluSp SINE Alu 0 313 1 225 0 0 0 chr1 70980510 70980535 -211213129 + (TG)n Simple_repeat Simple_repeat 2 26 0 969 168 0 0 chr1 70980667 70980678 -211212986 - AluJb SINE Alu -9 303 293 482 31 16 0 chr1 70980678 70980742 -211212922 + (TG)n Simple_repeat Simple_repeat 2 66 0 969 168 0 0 chr1 70980742 70980897 -211212767 - AluJb SINE Alu -18 294 137 812 143 0 0 chr1 70981301 70981427 -211212237 - AluJb SINE Alu -185 127 2 2156 102 0 0 chr1 70981739 70982032 -211211632 + AluSx SINE Alu 1 293 -19 1058 154 0 0 chr1 70982131 70982293 -211211371 + FRAM SINE Alu 1 162 -4 484 183 217 9 chr1 70982578 70982693 -211210971 + MIR SINE MIR 17 155 -107 2152 112 0 0 chr1 70982760 70983056 -211210608 + AluSx SINE Alu 1 296 -16 1747 121 7 29 chr1 70983058 70983370 -211210294 + AluSx SINE Alu 10 315 0 296 297 98 55 chr1 70983573 70983809 -211209855 - L3 LINE CR1 -49 1528 1283 539 273 134 109 chr1 70983866 70984806 -211208858 - L2 LINE L2 0 3272 2203 2164 89 7 3 chr1 70984806 70985110 -211208554 - AluSx SINE Alu -1 311 7 539 273 134 109 chr1 70985110 70985301 -211208363 - L2 LINE L2 -1069 2203 2018 182 294 33 65 chr1 70985301 70985485 -211208179 - L2 LINE L2 -1436 1878 1701 * 236 295 108 110 chr1 70985468 70985895 -211207769 - L3 LINE CR1 -324 1253 828 224 209 0 0 chr1 70985977 70986020 -211207644 - MIR SINE MIR -106 156 114 31 0 0 0 chr1 70986133 70986164 -211207500 + AT_rich Low_complexity Low_complexity 1 31 0 1317 155 182 12 chr1 70986220 70986478 -211207186 - AluSx SINE Alu 0 302 1 1380 272 120 75 chr1 70986545 70986743 -211206921 - L2 LINE L2 0 3313 3125 1715 156 10 3 chr1 70986743 70987038 -211206626 + AluJb SINE Alu 1 297 -15 2114 87 1 8 chr1 70987038 70987323 -211206341 + AluSx SINE Alu 1 284 -28 240 53 0 26 chr1 70987323 70987361 -211206303 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1380 272 120 75 chr1 70987361 70987865 -211205799 - L2 LINE L2 -188 3125 2645 2278 71 0 13 chr1 70987865 70988174 -211205490 + AluSp SINE Alu 9 313 0 1380 272 120 75 chr1 70988174 70988720 -211204944 - L2 LINE L2 -668 2645 2005 650 169 35 49 chr1 70988738 70988880 -211204784 + AluJb SINE Alu 2 141 -171 2275 81 3 0 chr1 70988880 70989177 -211204487 + AluSx SINE Alu 1 298 -14 1210 169 28 98 chr1 70989179 70989505 -211204159 + AluJb SINE Alu 1 303 -9 326 259 49 0 chr1 70989509 70989590 -211204074 - L2 LINE L2 -1323 1991 1907 485 244 24 102 chr1 70990167 70990208 -211203456 - MER5A DNA MER1_type 0 189 146 2323 86 0 3 chr1 70990208 70990511 -211203153 + AluSq SINE Alu 1 302 -11 485 244 24 102 chr1 70990511 70990674 -211202990 - MER5A DNA MER1_type -43 146 1 284 48 24 24 chr1 70990701 70990743 -211202921 + L2 LINE L2 3262 3303 -10 284 295 12 104 chr1 70991577 70991750 -211201914 - L2 LINE L2 0 3272 3116 1053 170 0 0 chr1 70991896 70992067 -211201597 + FRAM SINE Alu 6 176 0 366 153 46 40 chr1 70992085 70992183 -211201481 + AluS SINE Alu 7 72 -229 2265 88 13 0 chr1 70992221 70992529 -211201135 + AluSp SINE Alu 1 312 -1 2256 63 7 10 chr1 70992669 70992970 -211200694 + AluY SINE Alu 1 300 -11 2058 125 13 0 chr1 70993735 70994038 -211199626 + AluSx SINE Alu 3 309 -3 1209 113 18 0 chr1 70994217 70994385 -211199279 + AluSx SINE Alu 1 171 -141 1911 119 31 3 chr1 70995263 70995556 -211198108 - AluSq SINE Alu -12 301 1 22 0 0 0 chr1 70995595 70995617 -211198047 + AT_rich Low_complexity Low_complexity 1 22 0 1627 149 71 3 chr1 70995747 70996029 -211197635 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr1 70997048 70997070 -211196594 + AT_rich Low_complexity Low_complexity 1 22 0 2462 55 10 3 chr1 70997136 70997444 -211196220 + AluY SINE Alu 1 310 -1 813 146 8 8 chr1 70997455 70997585 -211196079 + FLAM_C SINE Alu 1 130 -3 2106 109 0 3 chr1 70997607 70997900 -211195764 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr1 70997909 70997939 -211195725 + AT_rich Low_complexity Low_complexity 1 30 0 1877 154 7 0 chr1 70997994 70998299 -211195365 + AluJo SINE Alu 1 307 -5 2133 106 0 0 chr1 70998402 70998694 -211194970 + AluSx SINE Alu 1 292 -20 1898 120 0 0 chr1 70998919 70999193 -211194471 + AluSx SINE Alu 11 284 -28 1526 158 41 10 chr1 70999874 71000165 -211193499 - AluJb SINE Alu -10 302 3 1756 132 56 0 chr1 71000424 71000711 -211192953 - AluJb SINE Alu -8 304 2 419 141 71 0 chr1 71001261 71001346 -211192318 - L1MB8 LINE L1 -5 6173 6083 2234 106 0 0 chr1 71002196 71002507 -211191157 - AluSx SINE Alu -1 311 1 2194 105 0 0 chr1 71003535 71003830 -211189834 + AluSg SINE Alu 1 295 -15 958 106 7 7 chr1 71004930 71005071 -211188593 + AluSq/x SINE Alu 11 151 -162 815 262 129 34 chr1 71005122 71005508 -211188156 - L1MEc LINE L1 -5944 452 30 1959 124 24 0 chr1 71005769 71006059 -211187605 - AluSg SINE Alu -13 297 1 233 116 0 23 chr1 71006175 71006218 -211187446 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 716 203 8 8 chr1 71006220 71006353 -211187311 - FLAM_A SINE Alu 0 133 1 22 56 0 0 chr1 71006382 71006418 -211187246 + AT_rich Low_complexity Low_complexity 1 36 0 217 267 78 22 chr1 71006848 71006938 -211186726 - MIR3 SINE MIR -21 187 93 979 174 0 73 chr1 71007063 71007282 -211186382 - AluJo SINE Alu -14 298 96 1964 138 0 3 chr1 71007306 71007596 -211186068 + AluJb SINE Alu 1 289 -23 1735 174 31 3 chr1 71007605 71007932 -211185732 - L1MC1 LINE L1 -26 6307 5972 2140 114 0 0 chr1 71007933 71008232 -211185432 - AluSx SINE Alu -13 299 1 1130 140 26 2 chr1 71008234 71008431 -211185233 - L1MC1 LINE L1 -310 5854 5654 1232 161 12 48 chr1 71008868 71008959 -211184705 + AluJo SINE Alu 41 134 -178 1497 177 28 7 chr1 71008959 71009247 -211184417 + AluJo SINE Alu 1 294 -18 1232 161 12 48 chr1 71009247 71009403 -211184261 + AluJo SINE Alu 134 279 -33 701 201 13 27 chr1 71009520 71009669 -211183995 - MLT2D LTR ERVL 0 414 268 870 178 0 6 chr1 71009694 71009868 -211183796 + AluJb SINE Alu 136 308 -4 181 313 48 24 chr1 71010162 71010245 -211183419 + L2 LINE L2 2747 2831 -483 700 212 94 6 chr1 71010347 71010517 -211183147 + MER5A DNA MER1_type 1 185 -4 1894 150 0 3 chr1 71010692 71010986 -211182678 - AluJb SINE Alu -17 295 3 1560 196 10 0 chr1 71010993 71011289 -211182375 - AluJo SINE Alu -13 299 1 1693 104 42 11 chr1 71011357 71011644 -211182020 + AluSx SINE Alu 5 300 -12 196 203 0 102 chr1 71011672 71011731 -211181933 + MER5B DNA MER1_type 1 53 -125 320 296 81 27 chr1 71013196 71013382 -211180282 + L1ME LINE L1 5482 5677 -444 2154 110 3 0 chr1 71013414 71013713 -211179951 - AluSx SINE Alu -12 300 1 2278 78 0 7 chr1 71014224 71014530 -211179134 + AluSg1 SINE Alu 1 304 -5 1293 149 21 0 chr1 71014856 71015091 -211178573 - AluJb SINE Alu -5 307 68 975 185 0 16 chr1 71015212 71015401 -211178263 + AluSg/x SINE Alu 87 272 -38 537 229 90 30 chr1 71015410 71015576 -211178088 - MIR SINE MIR -3 259 84 2156 102 6 16 chr1 71015663 71015976 -211177688 + AluSx SINE Alu 1 310 -2 2170 112 0 0 chr1 71016096 71016400 -211177264 - AluSx SINE Alu -8 304 1 1648 111 12 0 chr1 71016438 71016681 -211176983 - AluSx SINE Alu -62 250 5 1964 117 19 3 chr1 71016714 71017021 -211176643 - AluSx SINE Alu 0 312 1 229 25 0 50 chr1 71017027 71017067 -211176597 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1946 109 29 0 chr1 71017069 71017345 -211176319 - AluSp SINE Alu -29 284 1 1153 182 4 50 chr1 71017345 71017587 -211176077 - AluJo SINE Alu -17 295 65 1240 124 21 5 chr1 71017629 71017822 -211175842 + AluSq SINE Alu 3 198 -115 1772 146 0 0 chr1 71018037 71018305 -211175359 - AluSx SINE Alu -44 268 1 709 153 63 0 chr1 71018317 71018428 -211175236 - FLAM_C SINE Alu -14 119 2 1657 186 0 0 chr1 71018507 71018792 -211174872 + AluJb SINE Alu 1 285 -27 26 0 0 0 chr1 71018792 71018818 -211174846 + AT_rich Low_complexity Low_complexity 1 26 0 5010 82 11 19 chr1 71018965 71019221 -211174443 + LTR8 LTR ERV1 1 258 -433 2182 93 10 16 chr1 71019221 71019532 -211174132 + AluSx SINE Alu 1 309 -3 5010 82 11 19 chr1 71019532 71019942 -211173722 + LTR8 LTR ERV1 258 661 -30 2718 55 3 6 chr1 71019946 71020291 -211173373 + LTR14A LTR ERVK 1 344 0 4164 84 10 1 chr1 71020291 71020909 -211172755 + HERVK14 LTR ERVK 1 661 -5284 237 159 14 58 chr1 71021259 71021328 -211172336 + AluSq/x SINE Alu 41 106 -196 1319 147 18 132 chr1 71021370 71021711 -211171953 + AluJb SINE Alu 1 302 0 300 127 89 25 chr1 71021740 71021819 -211171845 - L2 LINE L2 -355 2958 2875 342 261 39 8 chr1 71021921 71022051 -211171613 - L2 LINE L2 -639 2675 2542 2133 76 14 0 chr1 71022994 71023284 -211170380 + AluSp SINE Alu 1 294 -19 1924 64 4 11 chr1 71023307 71023572 -211170092 + AluSc SINE Alu 29 291 -18 334 125 36 0 chr1 71024120 71024176 -211169488 - AluSp/q SINE Alu -9 294 237 244 207 0 0 chr1 71024177 71024235 -211169429 + C-rich Low_complexity Low_complexity 1 58 0 301 294 171 29 chr1 71024676 71024846 -211168818 - HAL1 LINE L1 -1448 1059 866 754 124 25 106 chr1 71025061 71025222 -211168442 - AluJo SINE Alu -163 149 2 1512 97 174 37 chr1 71025225 71025523 -211168141 - L1MA3 LINE L1 0 6305 5967 1770 132 24 37 chr1 71025523 71025677 -211167987 - AluSx SINE Alu -20 292 142 2122 93 0 23 chr1 71025677 71025978 -211167686 - AluY SINE Alu -17 294 1 1770 132 24 37 chr1 71025978 71026119 -211167545 - AluSx SINE Alu -170 142 1 508 292 80 56 chr1 71026255 71026628 -211167036 - L1M4 LINE L1 -2964 3182 2801 734 182 16 0 chr1 71026676 71026797 -211166867 - FLAM_C SINE Alu -20 123 1 1138 153 49 14 chr1 71026890 71027113 -211166551 - AluJb SINE Alu -32 280 50 338 155 22 25 chr1 71027139 71027225 -211166439 + AluS SINE Alu 1 59 -242 394 301 64 91 chr1 71027295 71027734 -211165930 - HAL1 LINE L1 -1206 1301 875 2039 134 0 0 chr1 71028549 71028862 -211164802 - AluSq SINE Alu 0 313 1 2387 31 0 10 chr1 71029172 71029484 -211164180 - AluY SINE Alu 0 311 1 2325 155 81 46 chr1 71029489 71029661 -211164003 - L1MB2 LINE L1 -44 6127 5962 1969 130 0 7 chr1 71029661 71029960 -211163704 - AluSx SINE Alu -11 301 5 2325 155 81 46 chr1 71029960 71030284 -211163380 - L1MB2 LINE L1 -209 5962 5614 2203 108 0 7 chr1 71030284 71030591 -211163073 - AluSq SINE Alu -6 307 3 825 253 6 0 chr1 71030620 71030794 -211162870 - AluJb SINE Alu -19 293 119 293 200 0 0 chr1 71030794 71030849 -211162815 - L1MB2 LINE L1 -580 5591 5537 2074 124 0 13 chr1 71030915 71031222 -211162442 - AluSx SINE Alu -9 303 1 362 320 80 8 chr1 71031284 71031409 -211162255 - L2 LINE L2 -198 3074 2941 252 318 18 30 chr1 71031677 71031914 -211161750 + CT-rich Low_complexity Low_complexity 1 234 0 1277 143 0 47 chr1 71032284 71032563 -211161101 - AluSx SINE Alu -43 269 4 1666 151 14 18 chr1 71032581 71032866 -211160798 - AluJb SINE Alu -28 284 1 379 275 57 61 chr1 71033411 71033746 -211159918 + L1MDa LINE L1 1324 1535 -5324 412 313 88 40 chr1 71033852 71034101 -211159563 + L1MDa LINE L1 1749 2009 -4938 1127 253 6 92 chr1 71034112 71034562 -211159102 + L1MDa LINE L1 2217 2580 -738 2053 107 17 0 chr1 71034592 71034883 -211158781 - AluSp SINE Alu -17 296 1 1351 161 5 0 chr1 71035769 71035987 -211157677 - AluJb SINE Alu -93 219 1 23 0 0 0 chr1 71036498 71036521 -211157143 + AT_rich Low_complexity Low_complexity 1 23 0 235 270 0 63 chr1 71037288 71037414 -211156250 + C-rich Low_complexity Low_complexity 3 120 0 1527 247 84 50 chr1 71038157 71038931 -211154733 + HAL1 LINE L1 908 1705 -802 610 147 37 9 chr1 71039127 71039236 -211154428 + HY1 scRNA scRNA 1 112 0 2506 52 0 0 chr1 71039254 71039543 -211154121 + AluY SINE Alu 1 289 -22 695 148 35 9 chr1 71039706 71039821 -211153843 + AluJb SINE Alu 16 133 -179 1302 137 0 32 chr1 71040072 71040291 -211153373 + AluSc SINE Alu 1 212 -97 388 300 96 59 chr1 71040635 71040855 -211152809 - L1ME4a LINE L1 -254 5867 5640 5302 88 1 64 chr1 71040858 71041749 -211151915 - L1HS LINE L1 -2 6153 5319 2270 103 3 0 chr1 71041786 71042078 -211151586 + AluSp SINE Alu 1 293 -20 24 0 0 0 chr1 71042078 71042102 -211151562 + AT_rich Low_complexity Low_complexity 1 24 0 301 243 261 18 chr1 71042291 71042513 -211151151 + MER46C DNA MER2_type 9 284 -54 449 263 17 8 chr1 71042896 71043014 -211150650 + L2 LINE L2 3195 3313 0 941 201 0 0 chr1 71043611 71043765 -211149899 + AluJb SINE Alu 134 287 -25 255 125 0 0 chr1 71043883 71043923 -211149741 + (A)n Simple_repeat Simple_repeat 1 40 0 1095 149 59 72 chr1 71044814 71044859 -211148805 - MER20 DNA MER1_type 0 219 175 2356 105 0 0 chr1 71044859 71045154 -211148510 - AluSx SINE Alu -15 297 3 1095 149 59 72 chr1 71045154 71045329 -211148335 - MER20 DNA MER1_type -44 175 2 347 325 18 0 chr1 71045586 71045700 -211147964 - MIR SINE MIR -98 164 49 1896 162 0 25 chr1 71045706 71045908 -211147756 - AluJb SINE Alu -5 307 114 2369 91 57 25 chr1 71045908 71046261 -211147403 + THE1B LTR MaLR 1 364 0 1896 162 0 25 chr1 71046261 71046373 -211147291 - AluJb SINE Alu -198 114 1 1335 104 16 16 chr1 71046778 71046971 -211146693 + AluSg/x SINE Alu 113 305 -7 3511 108 119 76 chr1 71047135 71047326 -211146338 + MER4D LTR ERV1 1 182 -721 704 138 114 0 chr1 71047326 71047449 -211146215 + FLAM_C SINE Alu 2 138 -5 2241 120 0 0 chr1 71047449 71047749 -211145915 + AluSg SINE Alu 1 300 -10 3511 108 119 76 chr1 71047749 71048391 -211145273 + MER4D LTR ERV1 181 893 -10 231 147 0 0 chr1 71048625 71048659 -211145005 - LTR8 LTR ERV1 0 691 658 2623 51 36 3 chr1 71048659 71048992 -211144672 - LTR14A LTR ERVK 0 344 1 792 43 0 43 chr1 71048995 71049111 -211144553 - HERVK14 LTR ERVK 0 5945 5835 370 159 0 18 chr1 71049111 71049186 -211144478 - MER41C LTR ERV1 -493 61 1 12506 48 18 7 chr1 71049186 71050786 -211142878 - HERVK14 LTR ERVK -186 5759 4142 * 16608 52 3 2 chr1 71050775 71052849 -211140815 - HERVK14 LTR ERVK -3032 2913 839 671 0 0 0 chr1 71052956 71053030 -211140634 + AluYb8 SINE Alu 227 300 -18 1484 57 0 0 chr1 71053030 71053206 -211140458 + AluY SINE Alu 119 294 -17 26 0 0 0 chr1 71053247 71053273 -211140391 + AT_rich Low_complexity Low_complexity 1 26 0 2220 94 0 3 chr1 71053360 71053647 -211140017 + AluSc SINE Alu 3 288 -21 2140 114 23 13 chr1 71053654 71053961 -211139703 + AluSg SINE Alu 1 310 0 294 228 12 94 chr1 71053969 71054058 -211139606 + L1M LINE L1 5254 5325 -843 1910 124 0 35 chr1 71054058 71054187 -211139477 + AluSx SINE Alu 11 143 -163 2402 92 0 0 chr1 71054187 71054491 -211139173 + AluSx SINE Alu 1 304 -8 1910 124 0 35 chr1 71054491 71054667 -211138997 + AluSx SINE Alu 143 306 0 294 228 12 94 chr1 71054667 71054747 -211138917 + L1M LINE L1 5325 5410 -758 1434 180 45 72 chr1 71054837 71055239 -211138425 + MER89 LTR ERV1 3 414 -145 2314 78 3 3 chr1 71055239 71055548 -211138116 - AluSp SINE Alu 0 309 1 2012 135 17 0 chr1 71055549 71055838 -211137826 - AluSx SINE Alu -17 295 2 1434 180 45 72 chr1 71055838 71055903 -211137761 + MER89 LTR ERV1 413 559 0 1980 123 7 24 chr1 71056246 71056539 -211137125 + AluJb SINE Alu 4 291 -21 922 230 32 36 chr1 71056736 71056988 -211136676 - MLT1C LTR MaLR 0 467 217 1887 141 35 11 chr1 71057027 71057188 -211136476 - AluSx SINE Alu -22 290 118 230 0 33 0 chr1 71057188 71057218 -211136446 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1887 141 35 11 chr1 71057218 71057339 -211136325 - AluSx SINE Alu -194 118 1 738 248 69 15 chr1 71058852 71059054 -211134610 + MIR SINE MIR 36 248 -14 1838 139 37 10 chr1 71059189 71059483 -211134181 + AluJb SINE Alu 1 302 -10 2281 113 0 19 chr1 71060141 71060452 -211133212 - AluSg SINE Alu -4 306 2 1184 264 95 10 chr1 71060953 71061343 -211132321 - MLT1J LTR MaLR -50 461 39 1720 159 53 21 chr1 71061660 71061943 -211131721 - AluJb SINE Alu -20 292 1 2187 97 0 55 chr1 71061990 71062319 -211131345 - AluSx SINE Alu -1 311 1 916 205 78 39 chr1 71062320 71062525 -211131139 - AluJb SINE Alu 0 312 100 1404 108 19 38 chr1 71062649 71062862 -211130802 + AluSq SINE Alu 97 305 -8 457 174 130 0 chr1 71062862 71062954 -211130710 + AluSg/x SINE Alu 197 300 -9 225 94 0 0 chr1 71062970 71063002 -211130662 + (A)n Simple_repeat Simple_repeat 1 32 0 2480 75 3 0 chr1 71063217 71063512 -211130152 - AluSp SINE Alu -17 296 1 1466 114 18 23 chr1 71063522 71063741 -211129923 - AluSx SINE Alu -10 300 83 561 69 26 103 chr1 71063741 71063857 -211129807 - AluSc SINE Alu -61 248 142 449 109 0 0 chr1 71063980 71064044 -211129620 - AluSx SINE Alu -211 102 39 23 0 0 0 chr1 71064198 71064221 -211129443 + AT_rich Low_complexity Low_complexity 1 23 0 525 211 14 3 chr1 71064567 71064711 -211128953 + MER5A DNA MER1_type 9 189 0 2464 73 7 3 chr1 71064942 71065244 -211128420 - AluSp SINE Alu -10 303 1 336 296 22 37 chr1 71065292 71065434 -211128230 - MIR SINE MIR -67 141 32 2025 155 0 0 chr1 71066981 71067278 -211126386 - AluJb SINE Alu -15 297 1 547 262 83 12 chr1 71067958 71068126 -211125538 + MIR SINE MIR 35 214 -48 704 289 92 13 chr1 71068327 71068555 -211125109 + MIR SINE MIR 17 262 0 1916 139 14 7 chr1 71068975 71069131 -211124533 - AluJo SINE Alu -23 289 129 2288 108 3 0 chr1 71069131 71069427 -211124237 - AluSq SINE Alu -16 297 1 1916 139 14 7 chr1 71069427 71069551 -211124113 - AluJo SINE Alu -183 129 7 992 90 0 8 chr1 71069672 71069805 -211123859 - FLAM_C SINE Alu 0 133 2 351 302 181 5 chr1 71070183 71070388 -211123276 + L2 LINE L2 2981 3221 -51 945 199 0 0 chr1 71070733 71070889 -211122775 - FRAM SINE Alu -10 166 11 2238 118 3 0 chr1 71070906 71071211 -211122453 - AluSq SINE Alu -7 306 1 414 0 0 0 chr1 71071715 71071761 -211121903 + (CA)n Simple_repeat Simple_repeat 1 46 0 643 268 116 5 chr1 71072029 71072219 -211121445 + MIR SINE MIR 38 248 -14 241 253 81 30 chr1 71073224 71073323 -211120341 - MIR SINE MIR -32 230 127 538 195 158 101 chr1 71073507 71073805 -211119859 + MLT1H LTR MaLR 235 549 0 322 283 81 23 chr1 71074341 71074514 -211119150 - MIR3 SINE MIR -3 205 23 377 292 53 48 chr1 71075783 71075999 -211117665 - MIR SINE MIR -26 236 25 1863 80 0 13 chr1 71076901 71077138 -211116526 - AluSx SINE Alu -75 237 4 341 296 64 16 chr1 71077341 71077466 -211116198 + L2 LINE L2 3141 3271 -1 384 279 57 25 chr1 71077565 71077687 -211115977 - MIR SINE MIR -70 192 67 264 272 61 68 chr1 71080043 71080190 -211113474 - MIR SINE MIR -35 227 82 269 241 97 11 chr1 71081350 71081507 -211112157 + L1MC/D LINE L1 5277 5445 -887 206 61 0 30 chr1 71081591 71081624 -211112040 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1047 83 7 0 chr1 71081624 71081768 -211111896 - MER107 DNA MER1_type -52 145 1 187 280 90 30 chr1 71081792 71081892 -211111772 - MIR SINE MIR -142 120 15 1092 113 11 92 chr1 71082323 71082508 -211111156 - AluSx SINE Alu -139 173 4 2440 82 3 3 chr1 71082521 71082825 -211110839 - AluSg SINE Alu -6 304 1 822 132 16 0 chr1 71082826 71082947 -211110717 - AluJo/FLAM SINE Alu -183 129 7 992 90 0 8 chr1 71083068 71083201 -211110463 - FLAM_C SINE Alu 0 133 2 351 302 181 5 chr1 71083579 71083784 -211109880 + L2 LINE L2 2981 3221 -51 945 199 0 0 chr1 71084130 71084286 -211109378 - FRAM SINE Alu -10 166 11 2243 118 3 0 chr1 71084303 71084608 -211109056 - AluSq SINE Alu -7 306 1 1293 113 18 0 chr1 71084828 71084996 -211108668 - AluSx SINE Alu -141 171 1 2212 125 13 0 chr1 71085175 71085478 -211108186 - AluSx SINE Alu -3 309 3 2398 63 7 10 chr1 71086243 71086544 -211107120 - AluY SINE Alu -11 300 1 2296 87 16 7 chr1 71086685 71086994 -211106670 - AluSp SINE Alu -1 312 1 288 110 23 43 chr1 71087032 71087115 -211106549 - Alu SINE Alu -249 53 11 1777 161 45 42 chr1 71087150 71087329 -211106335 - AluJo SINE Alu 0 312 130 2484 77 0 0 chr1 71087329 71087626 -211106038 - AluSx SINE Alu -14 298 2 1777 161 45 42 chr1 71087626 71087757 -211105907 - AluJo SINE Alu -182 130 1 2451 85 0 7 chr1 71087766 71088072 -211105592 - AluSx SINE Alu -8 304 1 189 254 119 0 chr1 71088185 71088252 -211105412 - L2 LINE L2 -5 3308 3234 228 329 13 0 chr1 71088382 71088461 -211105203 + MIR3 SINE MIR 86 165 -43 2103 183 49 29 chr1 71088741 71089194 -211104470 + LTR40b LTR ERVL 1 462 0 2344 98 7 0 chr1 71089496 71089792 -211103872 + AluSx SINE Alu 1 298 -14 365 246 105 94 chr1 71089830 71090001 -211103663 + L3 LINE CR1 1389 1561 -16 2384 102 0 13 chr1 71091182 71091496 -211102168 - AluSg SINE Alu 0 310 1 321 248 120 45 chr1 71091616 71091749 -211101915 - MIR SINE MIR -111 151 9 2127 141 16 0 chr1 71092022 71092326 -211101338 - AluSx SINE Alu -3 309 1 2144 96 13 54 chr1 71092338 71092652 -211101012 - AluSx SINE Alu -8 304 4 2506 76 3 3 chr1 71092665 71092969 -211100695 - AluSg SINE Alu -6 304 1 676 158 18 0 chr1 71093190 71093304 -211100360 - AluJb SINE Alu -7 305 190 473 279 87 12 chr1 71093342 71093423 -211100241 + MIR SINE MIR 90 164 -98 1691 169 32 21 chr1 71093423 71093734 -211099930 - AluJb SINE Alu 0 314 1 473 279 87 12 chr1 71093734 71093757 -211099907 + MIR SINE MIR 164 184 -78 1401 89 138 5 chr1 71093757 71093960 -211099704 - MER30 DNA MER1_type 0 230 1 473 279 87 12 chr1 71093960 71094014 -211099650 + MIR SINE MIR 184 262 0 2250 115 10 0 chr1 71094163 71094467 -211099197 - AluSp SINE Alu -6 307 1 2351 114 0 0 chr1 71094865 71095172 -211098492 - AluSx SINE Alu -5 307 1 492 312 51 23 chr1 71095829 71096044 -211097620 + MIR SINE MIR 6 226 -36 710 259 200 35 chr1 71096406 71096915 -211096749 - L2 LINE L2 -2 3311 2729 2087 155 0 0 chr1 71097055 71097359 -211096305 - AluJb SINE Alu -6 306 3 293 287 70 28 chr1 71097367 71097510 -211096154 + MIR SINE MIR 49 197 -65 70 33 0 0 chr1 71097517 71097608 -211096056 + AT_rich Low_complexity Low_complexity 1 91 0 411 229 0 0 chr1 71098066 71098210 -211095454 + CT-rich Low_complexity Low_complexity 2 145 0 2176 130 0 10 chr1 71098937 71099244 -211094420 - AluSx SINE Alu -8 304 1 184 330 155 25 chr1 71099271 71099626 -211094038 + L2 LINE L2 2569 2969 -345 244 308 86 34 chr1 71099759 71099876 -211093788 + L2 LINE L2 3150 3272 0 609 276 59 20 chr1 71099958 71100185 -211093479 + MIR SINE MIR 19 246 -16 801 137 8 0 chr1 71100234 71100373 -211093291 + L1M4 LINE L1 5662 5802 -365 2410 103 19 34 chr1 71100435 71100813 -211092851 + L1PB3 LINE L1 5783 6154 0 269 251 48 103 chr1 71101857 71101920 -211091744 + MIR SINE MIR 12 77 -133 2284 88 26 3 chr1 71101920 71102225 -211091439 + AluSp SINE Alu 1 312 -1 269 251 48 103 chr1 71102225 71102308 -211091356 + MIR SINE MIR 77 149 -61 2197 114 3 0 chr1 71102626 71102915 -211090749 - AluSx SINE Alu -22 290 1 2074 139 3 7 chr1 71103017 71103326 -211090338 - AluJb SINE Alu -4 308 1 448 258 157 11 chr1 71103677 71103855 -211089809 - MIR3 SINE MIR -2 206 3 280 196 42 42 chr1 71104248 71104416 -211089248 + (CACAC)n Simple_repeat Simple_repeat 1 168 0 487 225 0 0 chr1 71105186 71105275 -211088389 - AluS SINE Alu -224 89 1 2168 118 0 7 chr1 71105304 71105601 -211088063 + AluSg SINE Alu 1 295 -15 316 331 22 29 chr1 71105711 71105847 -211087817 + MIR SINE MIR 107 241 -21 689 276 235 14 chr1 71107399 71107628 -211086036 - L2 LINE L2 0 3313 3136 666 294 11 6 chr1 71107628 71107805 -211085859 + MER5B DNA MER1_type 1 178 0 689 276 235 14 chr1 71107805 71107941 -211085723 - L2 LINE L2 -177 3136 2867 2199 123 3 16 chr1 71108152 71108468 -211085196 - AluSx SINE Alu 0 312 1 258 268 196 0 chr1 71108656 71108753 -211084911 + L2 LINE L2 3155 3270 -2 292 265 133 10 chr1 71109605 71109744 -211083920 - MIR SINE MIR -62 146 14 186 189 0 0 chr1 71110100 71110137 -211083527 + (CA)n Simple_repeat Simple_repeat 2 38 0 532 309 64 32 chr1 71110276 71110464 -211083200 - MER91A DNA MER1_type 0 196 3 2392 95 0 0 chr1 71110570 71110875 -211082789 - AluSx SINE Alu -7 305 1 475 189 54 7 chr1 71113599 71113747 -211079917 + GA-rich Low_complexity Low_complexity 2 156 0 313 325 193 37 chr1 71113819 71114062 -211079602 - L3 LINE CR1 -125 1452 1172 626 220 173 61 chr1 71114137 71114278 -211079386 + MIR SINE MIR 8 182 -80 2364 89 0 3 chr1 71114278 71114570 -211079094 + AluSq SINE Alu 1 291 -22 626 220 173 61 chr1 71114570 71114642 -211079022 + MIR SINE MIR 182 245 -17 281 363 88 25 chr1 71114803 71114963 -211078701 - L2 LINE L2 0 3272 3103 912 267 197 28 chr1 71115223 71115684 -211077980 + MLT1G LTR MaLR 52 590 0 459 322 80 25 chr1 71115788 71116027 -211077637 - L2 LINE L2 -463 2851 2600 627 81 0 0 chr1 71116098 71116184 -211077480 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2349 92 0 7 chr1 71116184 71116479 -211077185 - AluSq SINE Alu -20 293 1 396 0 0 0 chr1 71116983 71117027 -211076637 + (CA)n Simple_repeat Simple_repeat 1 44 0 621 274 116 5 chr1 71117295 71117485 -211076179 + MIR SINE MIR 38 248 -14 241 253 81 30 chr1 71118490 71118589 -211075075 - MIR SINE MIR -32 230 127 538 195 158 101 chr1 71118773 71119071 -211074593 + MLT1H LTR MaLR 235 549 0 322 283 81 23 chr1 71119607 71119780 -211073884 - MIR3 SINE MIR -3 205 23 428 317 48 29 chr1 71121049 71121262 -211072402 - MIR SINE MIR -26 236 25 1898 81 0 8 chr1 71122164 71122400 -211071264 - AluSx SINE Alu -75 237 4 341 296 64 16 chr1 71122604 71122729 -211070935 + L2 LINE L2 3141 3271 -1 384 279 57 25 chr1 71122828 71122950 -211070714 - MIR SINE MIR -70 192 67 264 272 61 68 chr1 71125301 71125448 -211068216 - MIR SINE MIR -35 227 82 272 241 97 11 chr1 71126607 71126764 -211066900 + L1MC/D LINE L1 5277 5445 -887 206 61 0 30 chr1 71126848 71126881 -211066783 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1034 90 7 0 chr1 71126881 71127025 -211066639 - MER107 DNA MER1_type -52 145 1 187 280 90 30 chr1 71127049 71127149 -211066515 - MIR SINE MIR -142 120 15 21 0 0 0 chr1 71127501 71127522 -211066142 + AT_rich Low_complexity Low_complexity 1 21 0 719 290 27 54 chr1 71127624 71127883 -211065781 + MIR SINE MIR 11 262 0 191 302 0 0 chr1 71128178 71128221 -211065443 + MIR SINE MIR 24 66 -196 266 337 12 0 chr1 71128274 71128360 -211065304 + MIR SINE MIR 176 262 0 193 374 154 11 chr1 71128392 71128483 -211065181 + L2 LINE L2 3169 3272 0 2453 76 0 20 chr1 71128532 71128834 -211064830 - AluY SINE Alu -15 296 1 1234 154 11 45 chr1 71128835 71129154 -211064510 - L1M3 LINE L1 -656 5524 5217 941 161 7 0 chr1 71129238 71129381 -211064283 - FRAM SINE Alu -24 152 9 2135 128 3 0 chr1 71129392 71129681 -211063983 - AluSx SINE Alu -12 300 11 370 209 0 0 chr1 71129690 71129757 -211063907 - L1M3 LINE L1 -1190 4956 4890 1065 146 4 71 chr1 71129759 71129985 -211063679 - L1MB8 LINE L1 -116 6062 5852 240 317 89 10 chr1 71130565 71130666 -211062998 + MIR SINE MIR 6 114 -148 396 0 0 0 chr1 71130847 71130891 -211062773 + (TG)n Simple_repeat Simple_repeat 1 44 0 2157 108 0 24 chr1 71130891 71131179 -211062485 - AluSx SINE Alu -31 281 1 299 246 18 82 chr1 71131558 71131668 -211061996 + LTR67 LTR ERVL 5 107 -450 266 230 10 90 chr1 71131709 71131809 -211061855 + LTR67 LTR ERVL 466 557 0 2092 94 0 60 chr1 71132924 71133242 -211060422 - AluSx SINE Alu -13 299 1 1961 151 40 0 chr1 71134326 71134624 -211059040 - AluJb SINE Alu -2 310 1 2278 96 0 50 chr1 71134719 71135042 -211058622 + AluSx SINE Alu 1 307 -5 596 224 206 19 chr1 71135065 71135279 -211058385 - MIR SINE MIR -1 261 8 690 142 0 9 chr1 71135935 71136041 -211057623 - U6 snRNA snRNA -2 105 1 337 174 0 58 chr1 71136041 71136110 -211057554 + MER5A DNA MER1_type 125 189 0 542 228 186 0 chr1 71136149 71136294 -211057370 - MER5A DNA MER1_type 0 189 18 435 332 82 10 chr1 71136345 71136541 -211057123 + MIR SINE MIR 35 244 -18 585 265 36 41 chr1 71136621 71136840 -211056824 - MIR SINE MIR -13 249 32 1628 166 3 42 chr1 71136840 71137129 -211056535 - AluJb SINE Alu -19 293 16 276 227 34 45 chr1 71137426 71137514 -211056150 + L2 LINE L2 3227 3313 0 400 310 149 12 chr1 71138117 71138372 -211055292 - L2 LINE L2 -43 3229 2940 199 359 54 0 chr1 71138463 71138555 -211055109 - L2 LINE L2 -540 2774 2678 182 294 101 50 chr1 71138823 71138942 -211054722 + L2 LINE L2 3127 3251 -21 302 337 11 0 chr1 71138954 71139046 -211054618 - MIR3 SINE MIR -5 203 111 475 308 48 62 chr1 71139330 71139557 -211054107 + MIR SINE MIR 2 225 -37 338 218 75 83 chr1 71140132 71140265 -211053399 - MIR SINE MIR -23 239 108 1533 167 84 17 chr1 71140269 71140613 -211053051 + MLT1A1 LTR MaLR 3 365 0 257 270 112 22 chr1 71140613 71140702 -211052962 - MIR SINE MIR -151 111 15 244 352 55 0 chr1 71140801 71140946 -211052718 - L2 LINE L2 -1866 1448 1296 1353 128 43 53 chr1 71141380 71141650 -211052014 + MER33 DNA MER1_type 24 292 -2293 2228 134 0 3 chr1 71141650 71141957 -211051707 - AluSx SINE Alu -4 308 3 1353 128 43 53 chr1 71141957 71141990 -211051674 + MER33 DNA MER1_type 292 324 0 345 280 54 20 chr1 71142572 71142753 -211050911 + MIR SINE MIR 24 212 -50 2341 96 0 7 chr1 71143093 71143394 -211050270 - AluSx SINE Alu -13 299 1 250 282 29 39 chr1 71143603 71143706 -211049958 - MIR SINE MIR -50 212 111 1840 160 0 17 chr1 71143781 71144068 -211049596 - AluJo SINE Alu -25 287 6 284 256 0 24 chr1 71144359 71144441 -211049223 - AluJ/FRAM SINE Alu -1 301 222 30 0 0 0 chr1 71144479 71144509 -211049155 + AT_rich Low_complexity Low_complexity 1 30 0 2191 109 10 0 chr1 71144989 71145282 -211048382 + AluSx SINE Alu 6 301 -11 646 227 32 56 chr1 71145476 71145692 -211047972 - Charlie8 DNA MER1_type -2195 222 12 1447 216 45 22 chr1 71146808 71147165 -211046499 - MLT1A1 LTR MaLR 0 365 1 185 296 84 0 chr1 71147216 71147287 -211046377 - MIR SINE MIR -66 196 120 438 279 130 0 chr1 71147365 71147519 -211046145 - MIR SINE MIR -3 259 86 303 331 93 13 chr1 71147935 71148086 -211045578 + MIR3 SINE MIR 18 180 -28 183 205 51 0 chr1 71148495 71148534 -211045130 - L2 LINE L2 -213 3059 3019 363 289 200 0 chr1 71148635 71148770 -211044894 - MIR SINE MIR -95 167 6 592 280 56 35 chr1 71148952 71149184 -211044480 + MIR SINE MIR 12 248 -14 2069 154 85 13 chr1 71149772 71150219 -211043445 - Charlie4a DNA MER1_type -2 506 28 1680 142 73 22 chr1 71150768 71151084 -211042580 + MER44D DNA MER2_type 8 609 0 230 367 83 0 chr1 71151151 71151260 -211042404 - MIR SINE MIR -82 180 63 2128 58 4 0 chr1 71151395 71151656 -211042008 + L1PA8 LINE L1 5904 6165 -7 2250 88 3 3 chr1 71151779 71152096 -211041568 - AluSx SINE Alu 0 317 1 294 356 35 17 chr1 71152882 71153056 -211040608 - MIR3 SINE MIR -30 178 2 * 582 263 32 47 chr1 71153055 71153245 -211040419 + MIR SINE MIR 1 187 -75 194 203 31 109 chr1 71153376 71153440 -211040224 - MIR SINE MIR -63 145 87 508 171 23 0 chr1 71153461 71153549 -211040115 + AluJb SINE Alu 211 300 -12 184 304 0 0 chr1 71153714 71153770 -211039894 + L2 LINE L2 3217 3272 0 293 271 136 17 chr1 71154233 71154351 -211039313 + MIR3 SINE MIR 11 142 -66 310 219 0 16 chr1 71154545 71154609 -211039055 - L2 LINE L2 -5 3267 3205 193 317 63 70 chr1 71154683 71154992 -211038672 - L2 LINE L2 -189 3083 2778 418 202 173 0 chr1 71155581 71155685 -211037979 + L2 LINE L2 3188 3309 -4 224 155 99 84 chr1 71157432 71157503 -211036161 - MIR3 SINE MIR -46 162 91 2162 95 27 0 chr1 71157722 71158018 -211035646 - AluSx SINE Alu -8 304 1 185 339 0 15 chr1 71158106 71158171 -211035493 - MIR SINE MIR -83 179 116 496 267 20 95 chr1 71158468 71158610 -211035054 - Charlie8 DNA MER1_type -65 276 166 2171 102 14 0 chr1 71158610 71158903 -211034761 + AluSx SINE Alu 1 297 -15 496 267 20 95 chr1 71158903 71159056 -211034608 - Charlie8 DNA MER1_type -175 166 3 417 275 48 33 chr1 71159066 71159248 -211034416 - MIR SINE MIR -52 210 30 215 98 24 49 chr1 71159556 71159597 -211034067 + (CCCCCA)n Simple_repeat Simple_repeat 3 42 0 1651 144 172 31 chr1 71159965 71160319 -211033345 - MER4A LTR ERV1 0 664 261 555 89 89 0 chr1 71160319 71160409 -211033255 - MER4A LTR ERV1 -566 98 1 311 251 201 30 chr1 71160409 71160580 -211033084 - MIR SINE MIR -29 233 37 251 167 14 111 chr1 71160721 71160756 -211032908 + MER63C DNA MER1_type 1 27 -1034 2532 70 3 0 chr1 71160756 71161056 -211032608 + AluSp SINE Alu 3 303 -10 251 167 14 111 chr1 71161056 71161090 -211032574 + MER63C DNA MER1_type 27 63 -998 996 178 13 48 chr1 71161090 71161321 -211032343 + MER82 DNA MER2_type 1 223 -430 * 1123 176 66 4 chr1 71161294 71161550 -211032114 + MER63C DNA MER1_type 253 524 -406 595 205 0 0 chr1 71161554 71161666 -211031998 - L1MC/D LINE L1 -668 5691 5580 1678 158 69 14 chr1 71161667 71161809 -211031855 + AluJb SINE Alu 3 136 -176 2500 86 0 0 chr1 71161809 71162111 -211031553 + AluSq SINE Alu 1 302 -11 1678 158 69 14 chr1 71162111 71162259 -211031405 + AluJb SINE Alu 136 309 -3 401 129 14 0 chr1 71162271 71162341 -211031323 + A-rich Low_complexity Low_complexity 3 73 0 874 175 47 73 chr1 71162341 71162375 -211031289 - L1MC/D LINE L1 -767 5592 5559 2381 98 7 0 chr1 71162375 71162681 -211030983 - AluSp SINE Alu -5 308 1 874 175 47 73 chr1 71162681 71162880 -211030784 - L1MC/D LINE L1 -800 5559 5365 883 150 0 0 chr1 71162880 71163033 -211030631 + MER63C DNA MER1_type 778 930 0 784 265 68 49 chr1 71163586 71163952 -211029712 - MLT1H1 LTR MaLR -182 373 1 2393 86 7 0 chr1 71163979 71164280 -211029384 + AluSg SINE Alu 1 303 -7 2064 146 13 7 chr1 71164310 71164618 -211029046 - AluJb SINE Alu -2 310 1 1002 102 7 0 chr1 71164639 71164785 -211028879 + MLT1C LTR MaLR 1 147 -320 5252 132 122 27 chr1 71164785 71165843 -211027821 - MER52C LTR ERV1 0 1278 121 1636 127 93 33 chr1 71165871 71166171 -211027493 + MLT1C LTR MaLR 144 461 -6 2798 237 65 17 chr1 71166176 71167036 -211026628 + L1ME3A LINE L1 5265 6165 -5 2145 123 0 26 chr1 71167054 71167356 -211026308 + AluSx SINE Alu 1 294 -18 2292 120 3 0 chr1 71167366 71167675 -211025989 + AluSx SINE Alu 1 310 -2 24 53 0 0 chr1 71167819 71167857 -211025807 + AT_rich Low_complexity Low_complexity 1 38 0 181 246 148 16 chr1 71167942 71168003 -211025661 + L3 LINE CR1 701 769 -808 230 368 126 11 chr1 71168039 71168213 -211025451 + L2 LINE L2 2866 3059 -213 1350 233 122 56 chr1 71168217 71168716 -211024948 + MLT1F1 LTR MaLR 11 567 0 1744 172 6 49 chr1 71168751 71168929 -211024735 - AluJb SINE Alu 0 312 153 2150 76 65 10 chr1 71168929 71169219 -211024445 - AluSp SINE Alu -7 306 1 1744 172 6 49 chr1 71169219 71169366 -211024298 - AluJb SINE Alu -159 153 1 966 201 6 17 chr1 71169619 71169793 -211023871 - FAM SINE Alu -3 172 1 697 322 145 32 chr1 71169818 71170344 -211023320 - L2 LINE L2 -749 2565 2100 1826 159 3 14 chr1 71170344 71170660 -211023004 + AluJb SINE Alu 1 313 0 697 322 145 32 chr1 71170660 71170697 -211022967 - L2 LINE L2 -1214 2100 2069 1628 214 19 32 chr1 71170697 71171067 -211022597 + MLT1A1 LTR MaLR 1 365 0 697 322 145 32 chr1 71171067 71171100 -211022564 - L2 LINE L2 -1245 2069 1898 1405 203 150 86 chr1 71171105 71171621 -211022043 + MLT1G LTR MaLR 1 518 -72 2050 119 0 36 chr1 71171621 71171923 -211021741 + AluSq SINE Alu 1 291 -22 1405 203 150 86 chr1 71171923 71171986 -211021678 + MLT1G LTR MaLR 518 576 -14 258 311 38 9 chr1 71172000 71172106 -211021558 - L2 LINE L2 -1418 1896 1788 210 326 200 30 chr1 71172426 71172788 -211020876 - L2 LINE L2 -2335 979 680 2449 123 71 20 chr1 71172788 71172827 -211020837 - MSTA LTR MaLR 0 428 392 2432 88 3 0 chr1 71172827 71173132 -211020532 + AluSp SINE Alu 1 306 -7 2449 123 71 20 chr1 71173132 71173499 -211020165 - MSTA LTR MaLR -36 392 1 210 326 200 30 chr1 71173499 71173811 -211019853 - L2 LINE L2 -2634 680 190 1840 139 0 0 chr1 71173839 71174090 -211019574 - AluSx SINE Alu -15 297 47 1929 88 7 4 chr1 71174164 71174437 -211019227 - L1PA13 LINE L1 0 6163 5890 294 276 64 57 chr1 71175197 71175366 -211018298 - MIR SINE MIR -49 159 9 391 246 64 45 chr1 71176962 71177072 -211016592 + MIR SINE MIR 99 210 -52 341 281 0 0 chr1 71177590 71177672 -211015992 + MIR SINE MIR 18 99 -163 1465 158 183 176 chr1 71177672 71177709 -211015955 - MLT1A1 LTR MaLR 0 396 361 2023 160 0 13 chr1 71177709 71178016 -211015648 + AluJo SINE Alu 1 303 -9 1465 158 183 176 chr1 71178016 71178287 -211015377 - MLT1A1 LTR MaLR -35 361 82 2267 120 3 0 chr1 71178287 71178588 -211015076 - AluSx SINE Alu -10 302 1 1465 158 183 176 chr1 71178588 71178671 -211014993 - MLT1A1 LTR MaLR -314 82 1 620 237 7 22 chr1 71178679 71178814 -211014850 + MIR SINE MIR 111 243 -19 470 265 76 0 chr1 71179717 71179849 -211013815 - MIR SINE MIR -71 191 50 665 164 7 0 chr1 71180084 71180224 -211013440 + (TCCA)n Simple_repeat Simple_repeat 4 144 0 720 195 0 0 chr1 71180252 71180416 -211013248 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 2398 99 0 7 chr1 71181186 71181489 -211012175 - AluSx SINE Alu -11 301 1 325 309 75 52 chr1 71181989 71182296 -211011368 - L2 LINE L2 -339 2975 2662 273 314 191 27 chr1 71182495 71182715 -211010949 - L2 LINE L2 -25 3247 2992 438 254 81 52 chr1 71183045 71183070 -211010594 + MIR SINE MIR 8 31 -231 2464 84 3 0 chr1 71183070 71183381 -211010283 + AluSx SINE Alu 1 312 0 438 254 81 52 chr1 71183381 71183528 -211010136 + MIR SINE MIR 31 185 -77 1252 224 251 40 chr1 71183530 71184059 -211009605 + LTR50 LTR ERVL 1 697 -98 2273 157 6 8 chr1 71184059 71184422 -211009242 + MLT1A1 LTR MaLR 4 365 0 1252 224 251 40 chr1 71184422 71184548 -211009116 + LTR50 LTR ERVL 697 795 0 331 268 89 8 chr1 71184625 71184748 -211008916 - L2 LINE L2 0 3272 3140 181 319 35 53 chr1 71184946 71185115 -211008549 + L2 LINE L2 3148 3313 0 * 354 321 0 18 chr1 71185109 71185221 -211008443 - L2 LINE L2 0 3313 3204 1738 127 52 70 chr1 71185907 71185948 -211007716 - THE1C LTR MaLR 0 375 335 2444 92 3 0 chr1 71185948 71186252 -211007412 + AluSp SINE Alu 1 305 -8 1738 127 52 70 chr1 71186252 71186579 -211007085 - THE1C LTR MaLR -40 335 14 989 183 84 0 chr1 71186924 71187115 -211006549 - MER3 DNA MER1_type -1 208 2 602 190 0 7 chr1 71187121 71187263 -211006401 + G-rich Low_complexity Low_complexity 4 144 0 761 146 18 12 chr1 71187284 71187455 -211006209 + G-rich Low_complexity Low_complexity 1 172 0 1095 167 40 5 chr1 71187460 71187682 -211005982 - MLT1D LTR MaLR -2 503 274 1020 189 11 0 chr1 71187723 71187908 -211005756 - MLT1D LTR MaLR -318 187 1 188 163 0 41 chr1 71187911 71187960 -211005704 + GA-rich Low_complexity Low_complexity 1 47 0 2276 121 0 0 chr1 71188577 71188913 -211004751 - AluSx SINE Alu 0 336 1 2472 74 0 6 chr1 71188961 71189273 -211004391 + AluY SINE Alu 2 311 0 581 194 173 68 chr1 71189285 71189533 -211004131 - MER5C DNA MER1_type -50 274 1 2367 111 0 0 chr1 71189806 71190103 -211003561 - AluSx SINE Alu -15 297 1 345 179 15 0 chr1 71190111 71190178 -211003486 - Charlie4 DNA MER1_type -4 1957 1890 1506 162 39 88 chr1 71190492 71190800 -211002864 - AluJo SINE Alu -19 293 1 309 322 43 17 chr1 71190800 71190915 -211002749 + L2 LINE L2 3154 3271 -1 * 404 132 0 0 chr1 71190910 71190983 -211002681 + L1 LINE L1 4659 4731 -1415 205 346 167 0 chr1 71191576 71191804 -211001860 - L2 LINE L2 -862 2452 2187 198 0 0 0 chr1 71191960 71191982 -211001682 + (A)n Simple_repeat Simple_repeat 1 22 0 754 144 0 45 chr1 71192347 71192479 -211001185 + FLAM_C SINE Alu 2 127 -16 2434 85 3 3 chr1 71192674 71192981 -211000683 - AluSp SINE Alu -6 307 1 2475 144 59 0 chr1 71193208 71193612 -211000052 - MSTA LTR MaLR 0 428 1 754 225 54 50 chr1 71193663 71193786 -210999878 - MIR SINE MIR -10 252 125 2145 119 0 3 chr1 71193786 71194113 -210999551 + AluSx SINE Alu 1 326 0 754 225 54 50 chr1 71194113 71194210 -210999454 - MIR SINE MIR -137 125 30 608 281 183 12 chr1 71194261 71194606 -210999058 - MLT1I LTR MaLR -1 408 5 918 217 0 0 chr1 71195034 71195200 -210998464 - FRAM SINE Alu 0 166 1 749 196 25 6 chr1 71195200 71195350 -210998314 - L1MB4 LINE L1 -25 6155 6000 270 261 102 0 chr1 71195359 71195447 -210998217 - MIR SINE MIR -109 153 57 1262 255 28 52 chr1 71195793 71196198 -210997466 + MLT1J LTR MaLR 56 450 -61 595 253 169 60 chr1 71196198 71196249 -210997415 - MLT1H LTR MaLR 0 549 505 2313 106 0 0 chr1 71196249 71196552 -210997112 + AluSx SINE Alu 1 303 -9 595 253 169 60 chr1 71196552 71196801 -210996863 - MLT1H LTR MaLR -44 505 216 345 123 0 18 chr1 71196942 71196999 -210996665 + MLT1J LTR MaLR 446 501 -10 1575 168 3 57 chr1 71197325 71197623 -210996041 + AluJo SINE Alu 7 288 -24 2051 140 0 3 chr1 71197634 71197926 -210995738 + AluSx SINE Alu 1 291 -21 31 58 0 0 chr1 71197959 71198011 -210995653 + AT_rich Low_complexity Low_complexity 1 52 0 2537 50 7 0 chr1 71198012 71198312 -210995352 + AluY SINE Alu 1 302 -9 2179 122 3 0 chr1 71198317 71198621 -210995043 + AluSx SINE Alu 1 305 -7 2523 51 0 0 chr1 71198621 71198916 -210994748 + AluY SINE Alu 1 295 -16 188 265 206 0 chr1 71199900 71199968 -210993696 + MIR SINE MIR 111 192 -70 250 245 172 61 chr1 71200714 71200877 -210992787 + MIR SINE MIR 36 216 -46 569 165 0 55 chr1 71201042 71201169 -210992495 + L2 LINE L2 3188 3307 -6 1651 171 0 14 chr1 71201366 71201653 -210992011 + AluJo SINE Alu 26 308 -4 2375 68 0 4 chr1 71201949 71202269 -210991395 + AluSq SINE Alu 5 323 0 22 80 0 0 chr1 71202502 71202552 -210991112 + AT_rich Low_complexity Low_complexity 1 50 0 2692 124 24 54 chr1 71202730 71202922 -210990742 - Tigger2 DNA MER2_type 0 2718 2522 2838 44 0 0 chr1 71202922 71203260 -210990404 - L1PA4 LINE L1 -3 6152 5815 2692 124 24 54 chr1 71203260 71203313 -210990351 - Tigger2 DNA MER2_type -196 2522 2469 2373 90 3 0 chr1 71203313 71203612 -210990052 + AluSq SINE Alu 1 300 -13 2692 124 24 54 chr1 71203612 71203825 -210989839 - Tigger2 DNA MER2_type -249 2469 2273 336 194 0 42 chr1 71203815 71203887 -210989777 - Tigger2 DNA MER2_type -2649 69 1 * 25 0 0 0 chr1 71203902 71203927 -210989737 + AT_rich Low_complexity Low_complexity 1 25 0 2198 137 0 0 chr1 71203928 71204234 -210989430 - AluSx SINE Alu -6 306 1 25 31 0 0 chr1 71204645 71204677 -210988987 + AT_rich Low_complexity Low_complexity 1 32 0 1618 180 68 62 chr1 71204693 71205077 -210988587 + MSTD LTR MaLR 1 386 -10 2808 258 24 7 chr1 71205289 71206010 -210987654 + MER20B DNA MER1_type 10 742 -41 1006 269 125 3 chr1 71206029 71206382 -210987282 + L2 LINE L2 309 704 -2610 1000 259 28 79 chr1 71206668 71207288 -210986376 + L2 LINE L2 724 1373 -1941 7699 180 28 24 chr1 71207294 71207527 -210986137 - Charlie1 DNA MER1_type -1 2760 2529 2282 95 3 0 chr1 71207527 71207835 -210985829 - AluSx SINE Alu 0 309 1 7699 180 28 24 chr1 71207835 71209217 -210984447 - Charlie1 DNA MER1_type -232 2529 1138 1775 171 3 3 chr1 71209224 71209516 -210984148 - AluJo SINE Alu -2 310 19 269 61 0 0 chr1 71209516 71209549 -210984115 + MER57A LTR ERV1 9 41 -362 2362 105 0 0 chr1 71209578 71209884 -210983780 - AluSx SINE Alu -6 306 1 2403 130 13 21 chr1 71209885 71210262 -210983402 + MER57A LTR ERV1 30 403 0 1321 211 0 0 chr1 71210286 71210537 -210983127 - Charlie1 DNA MER1_type -1625 1136 886 276 125 0 0 chr1 71210563 71210603 -210983061 + MSTD LTR MaLR 357 396 0 2254 114 0 0 chr1 71210653 71210950 -210982714 + AluSq SINE Alu 1 297 -16 1691 169 44 49 chr1 71210998 71211365 -210982299 - MLT1A1 LTR MaLR 0 365 1 875 148 0 15 chr1 71211470 71211668 -210981996 + FLAM_C SINE Alu 1 196 0 24 32 0 0 chr1 71211711 71211742 -210981922 + AT_rich Low_complexity Low_complexity 1 31 0 2086 124 10 7 chr1 71211786 71212084 -210981580 + AluSq SINE Alu 1 299 -14 910 107 0 23 chr1 71212152 71212283 -210981381 - FLAM_C SINE Alu -5 128 1 4643 207 58 59 chr1 71212479 71213072 -210980592 + L1MC4 LINE L1 6793 7385 -610 1666 156 105 4 chr1 71213072 71213348 -210980316 - AluJb SINE Alu -8 304 1 4643 207 58 59 chr1 71213348 71214018 -210979646 + L1MC4 LINE L1 7385 7995 0 264 359 19 10 chr1 71214143 71214246 -210979418 - L2 LINE L2 -51 3221 3118 1203 265 73 19 chr1 71215588 71216000 -210977664 + MER69 DNA AcHobo 1 434 -2092 296 319 24 12 chr1 71216431 71216597 -210977067 - MIR SINE MIR 0 262 95 2165 113 0 0 chr1 71217072 71217383 -210976281 + AluSq SINE Alu 1 311 0 2415 229 58 45 chr1 71217512 71218310 -210975354 + L1MC5 LINE L1 7106 7913 -48 1982 135 3 20 chr1 71218320 71218624 -210975040 - AluJb SINE Alu 0 312 14 1020 44 0 0 chr1 71218651 71218765 -210974899 + AluY SINE Alu 1 114 -197 2642 43 0 0 chr1 71218765 71219064 -210974600 - AluY SINE Alu -12 299 1 1602 55 0 5 chr1 71219065 71219265 -210974399 + AluY SINE Alu 103 301 -10 752 298 86 9 chr1 71219717 71220053 -210973611 + LTR16A LTR ERVL 79 440 -10 2014 121 13 80 chr1 71220993 71221380 -210972284 + L1MB3 LINE L1 5816 6176 -7 570 249 113 12 chr1 71221440 71221645 -210972019 + MIR SINE MIR 34 256 -6 540 259 39 91 chr1 71221663 71221895 -210971769 + MIR SINE MIR 9 228 -34 2270 113 135 5 chr1 71222044 71222423 -210971241 + MSTA LTR MaLR 1 428 0 214 273 273 7 chr1 71222441 71222580 -210971084 - MIR SINE MIR -10 252 77 2513 70 0 0 chr1 71223260 71223559 -210970105 - AluY SINE Alu -12 299 1 294 283 40 0 chr1 71224623 71224722 -210968942 + MIR3 SINE MIR 78 180 -28 267 333 26 9 chr1 71224706 71224820 -210968844 - MER5A DNA MER1_type -6 183 68 * 198 118 0 0 chr1 71224839 71224873 -210968791 + (CTTG)n Simple_repeat Simple_repeat 2 35 0 269 234 43 53 chr1 71224881 71224975 -210968689 + MIR3 SINE MIR 116 208 0 688 223 50 55 chr1 71225720 71225940 -210967724 + L1MC4a LINE L1 6499 6717 -1091 810 224 0 29 chr1 71225940 71226110 -210967554 + FRAM SINE Alu 1 164 -12 3027 201 79 94 chr1 71226112 71227125 -210966539 + L1MC5 LINE L1 6715 7742 -219 1574 147 56 35 chr1 71227125 71227410 -210966254 - AluJo SINE Alu -16 296 6 3027 201 79 94 chr1 71227410 71227433 -210966231 + L1MC5 LINE L1 7742 7764 -197 1669 181 3 16 chr1 71227433 71227736 -210965928 - AluJo SINE Alu -11 301 3 3027 201 79 94 chr1 71227736 71227932 -210965732 + L1MC5 LINE L1 7764 7929 -32 317 332 126 16 chr1 71229030 71229220 -210964444 - MIR SINE MIR -48 214 4 247 268 134 0 chr1 71229317 71229414 -210964250 - MER91C DNA MER1_type -9 131 22 1017 275 62 32 chr1 71229664 71230129 -210963535 + L2 LINE L2 2084 2562 -752 2093 152 11 20 chr1 71230194 71230550 -210963114 + MLT1A1 LTR MaLR 1 353 -12 321 128 0 0 chr1 71230715 71230762 -210962902 - AluJo SINE Alu -9 293 247 401 148 0 0 chr1 71230925 71230986 -210962678 - AluJo SINE Alu -61 241 181 782 203 0 7 chr1 71230987 71231130 -210962534 - AluJo SINE Alu -169 143 2 264 293 53 15 chr1 71231214 71231347 -210962317 + L2 LINE L2 1859 1996 -1318 234 367 53 16 chr1 71231664 71231909 -210961755 + L2 LINE L2 2189 2442 -872 300 329 21 0 chr1 71231923 71232066 -210961598 + L2 LINE L2 2553 2698 -616 279 290 122 0 chr1 71232167 71232298 -210961366 + MER103 DNA DNA 3 149 -17 340 269 56 0 chr1 71232541 71232649 -210961015 + LTR33 LTR ERVL 67 180 -341 800 203 25 15 chr1 71232712 71232909 -210960755 + LTR33 LTR ERVL 301 499 -22 188 331 79 39 chr1 71232924 71233051 -210960613 + MIR SINE MIR 118 249 -13 740 182 16 0 chr1 71233558 71233679 -210959985 + FLAM_A SINE Alu 1 123 -10 2060 167 0 0 chr1 71233702 71234014 -210959650 + AluSx SINE Alu 1 312 0 2374 104 0 0 chr1 71234021 71234330 -210959334 + AluSx SINE Alu 1 309 -3 1864 184 68 10 chr1 71235531 71235944 -210957720 + MLT1D LTR MaLR 1 437 -68 918 217 0 0 chr1 71236532 71236698 -210956966 - FRAM SINE Alu 0 166 1 749 196 25 6 chr1 71236698 71236848 -210956816 - L1MB4 LINE L1 -25 6155 6000 270 261 102 0 chr1 71236857 71236945 -210956719 - MIR SINE MIR -109 153 57 1262 255 28 52 chr1 71237291 71237696 -210955968 + MLT1J LTR MaLR 56 450 -61 595 253 169 60 chr1 71237696 71237747 -210955917 - MLT1H LTR MaLR 0 549 505 2313 106 0 0 chr1 71237747 71238050 -210955614 + AluSx SINE Alu 1 303 -9 595 253 169 60 chr1 71238050 71238299 -210955365 - MLT1H LTR MaLR -44 505 216 345 123 0 18 chr1 71238440 71238497 -210955167 + MLT1J LTR MaLR 446 501 -10 1575 168 3 57 chr1 71238823 71239121 -210954543 + AluJo SINE Alu 7 288 -24 2051 140 0 3 chr1 71239132 71239424 -210954240 + AluSx SINE Alu 1 291 -21 31 58 0 0 chr1 71239457 71239509 -210954155 + AT_rich Low_complexity Low_complexity 1 52 0 2537 50 7 0 chr1 71239510 71239810 -210953854 + AluY SINE Alu 1 302 -9 2137 128 3 0 chr1 71239815 71240119 -210953545 + AluSx SINE Alu 1 305 -7 2523 51 0 0 chr1 71240119 71240414 -210953250 + AluY SINE Alu 1 295 -16 206 250 194 14 chr1 71241394 71241466 -210952198 + MIR SINE MIR 108 192 -70 298 245 172 61 chr1 71242212 71242375 -210951289 + MIR SINE MIR 36 216 -46 614 165 0 55 chr1 71242540 71242667 -210950997 + L2 LINE L2 3188 3307 -6 1644 171 0 14 chr1 71242864 71243151 -210950513 + AluJo SINE Alu 26 308 -4 2372 82 0 3 chr1 71243447 71243741 -210949923 + AluSx SINE Alu 5 297 -15 2554 123 71 20 chr1 71244081 71244448 -210949216 + MSTA LTR MaLR 1 392 -36 2367 85 3 3 chr1 71244448 71244754 -210948910 - AluSp SINE Alu -7 306 1 2554 123 71 20 chr1 71244754 71244793 -210948871 + MSTA LTR MaLR 392 428 0 239 311 38 9 chr1 71245476 71245582 -210948082 + L2 LINE L2 1788 1896 -1418 1502 203 150 86 chr1 71245596 71245659 -210948005 - MLT1G LTR MaLR -14 576 518 2012 119 0 36 chr1 71245659 71245961 -210947703 - AluSq SINE Alu -22 291 1 1502 203 150 86 chr1 71245961 71246477 -210947187 - MLT1G LTR MaLR -72 518 1 627 323 145 32 chr1 71246482 71246515 -210947149 + L2 LINE L2 1898 1926 -1388 1737 205 22 35 chr1 71246515 71246885 -210946779 - MLT1A1 LTR MaLR 0 365 1 627 323 145 32 chr1 71246885 71246922 -210946742 + L2 LINE L2 1926 1957 -1357 1784 159 3 14 chr1 71246922 71247238 -210946426 - AluJb SINE Alu 0 313 1 627 323 145 32 chr1 71247238 71247764 -210945900 + L2 LINE L2 1957 2565 -749 997 201 6 17 chr1 71247789 71247963 -210945701 + FAM SINE Alu 1 172 -3 1684 172 6 49 chr1 71248216 71248363 -210945301 + AluJb SINE Alu 1 153 -159 2115 76 65 10 chr1 71248363 71248653 -210945011 + AluSp SINE Alu 1 306 -7 1684 172 6 49 chr1 71248653 71248831 -210944833 + AluJb SINE Alu 153 312 0 1487 233 122 56 chr1 71248866 71249365 -210944299 - MLT1F1 LTR MaLR 0 567 11 224 361 130 12 chr1 71249369 71249538 -210944126 - L2 LINE L2 -213 3059 2871 24 53 0 0 chr1 71249725 71249763 -210943901 + AT_rich Low_complexity Low_complexity 1 38 0 2245 120 3 0 chr1 71249907 71250216 -210943448 - AluSx SINE Alu -2 310 1 2102 123 0 26 chr1 71250226 71250528 -210943136 - AluSx SINE Alu -18 294 1 3069 233 65 17 chr1 71250546 71251406 -210942258 - L1ME3A LINE L1 -5 6165 5265 1736 123 93 33 chr1 71251411 71251711 -210941953 - MLT1C LTR MaLR -6 461 144 1975 137 47 44 chr1 71251711 71252130 -210941534 + MER52C LTR ERV1 1 512 -766 2808 64 23 6 chr1 71252279 71252623 -210941041 - L1PA10 LINE L1 -15 6153 5804 3059 189 54 45 chr1 71252623 71252899 -210940765 - L1ME LINE L1 -585 5581 5309 1068 200 56 132 chr1 71252899 71253345 -210940319 - MLT2D LTR ERVL 0 414 3 3059 189 54 45 chr1 71253345 71254022 -210939642 - L1ME LINE L1 -857 5309 4625 713 206 15 0 chr1 71254134 71254265 -210939399 - AluJb SINE Alu -1 311 179 2484 82 0 0 chr1 71254747 71255053 -210938611 - AluSx SINE Alu -6 306 1 880 235 87 29 chr1 71255124 71255435 -210938229 - HAL1 LINE L1 -343 2164 1836 1960 143 17 0 chr1 71255919 71256212 -210937452 + AluSx SINE Alu 1 298 -14 2376 63 3 0 chr1 71256214 71256499 -210937165 + AluY SINE Alu 1 286 -25 25 31 0 0 chr1 71256499 71256531 -210937133 + AT_rich Low_complexity Low_complexity 1 32 0 757 192 66 16 chr1 71256583 71256765 -210936899 + MER106A DNA MER1_type 41 231 -5 975 246 27 9 chr1 71257366 71257586 -210936078 - MER58A DNA MER1_type 0 224 1 714 65 0 0 chr1 71257834 71257927 -210935737 + L1MA2 LINE L1 6212 6304 0 25 0 0 0 chr1 71258307 71258332 -210935332 + AT_rich Low_complexity Low_complexity 1 25 0 2365 71 0 7 chr1 71258332 71258626 -210935038 + AluY SINE Alu 1 292 -19 1468 183 60 0 chr1 71258715 71258983 -210934681 - AluJo SINE Alu -20 292 9 2211 116 3 0 chr1 71259031 71259332 -210934332 + AluSx SINE Alu 1 302 -10 473 225 160 68 chr1 71259857 71260025 -210933639 - L2 LINE L2 -1367 1947 1796 2060 86 52 0 chr1 71260025 71260330 -210933334 + AluSg SINE Alu 1 319 0 473 225 160 68 chr1 71260330 71260453 -210933211 - L2 LINE L2 -1518 1796 1628 415 282 8 16 chr1 71260458 71260582 -210933082 - L2 LINE L2 -2358 956 834 840 111 0 24 chr1 71260588 71260714 -210932950 + AluJb SINE Alu 1 123 -189 31 0 0 0 chr1 71260714 71260745 -210932919 + AT_rich Low_complexity Low_complexity 1 31 0 482 343 24 19 chr1 71260858 71261068 -210932596 + MLT1J LTR MaLR 299 509 -2 432 281 35 64 chr1 71261333 71261536 -210932128 - LTR67 LTR ERVL -14 543 347 2330 88 0 22 chr1 71261684 71262001 -210931663 - AluSg SINE Alu 0 310 1 429 262 42 29 chr1 71262021 71262199 -210931465 + L1M4 LINE L1 3548 3731 -2415 * 641 180 81 2 chr1 71262182 71262446 -210931218 + L1PB4 LINE L1 5847 6157 -3 734 222 119 0 chr1 71262557 71262751 -210930913 + MIR SINE MIR 3 219 -43 1285 78 0 0 chr1 71263103 71263257 -210930407 + AluSq SINE Alu 1 154 -159 2102 103 10 3 chr1 71263853 71264143 -210929521 - AluSx SINE Alu -20 292 1 1876 128 4 0 chr1 71264363 71264621 -210929043 + AluSx SINE Alu 1 259 -53 1838 157 0 3 chr1 71265456 71265768 -210927896 + AluJb SINE Alu 1 311 0 405 0 0 0 chr1 71266280 71266325 -210927339 + (CA)n Simple_repeat Simple_repeat 2 46 0 316 289 74 66 chr1 71266515 71266757 -210926907 + L1MEd LINE L1 275 518 -5601 620 237 0 0 chr1 71266900 71267031 -210926633 - MLT1D LTR MaLR -8 497 367 620 198 0 0 chr1 71267031 71267132 -210926532 + FLAM_A SINE Alu 4 104 -38 1411 208 57 38 chr1 71267133 71267499 -210926165 - MLT1D LTR MaLR -132 373 1 1123 149 0 6 chr1 71267627 71267802 -210925862 + AluJb SINE Alu 1 174 -138 272 81 0 0 chr1 71267807 71267844 -210925820 - Alu SINE Alu -257 45 9 204 40 0 0 chr1 71267847 71267872 -210925792 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 300 212 0 0 chr1 71267872 71267938 -210925726 + CT-rich Low_complexity Low_complexity 2 67 0 1249 154 22 40 chr1 71268020 71268247 -210925417 + AluJo SINE Alu 11 233 -79 2884 194 113 48 chr1 71268251 71269019 -210924645 + LTR1B LTR ERV1 9 826 0 401 115 0 90 chr1 71269019 71269097 -210924567 + AluJo SINE Alu 230 300 -12 1967 132 31 0 chr1 71269160 71269449 -210924215 - AluSx SINE Alu -14 298 1 408 125 0 0 chr1 71269515 71269571 -210924093 - AluJb SINE Alu -171 141 86 1109 212 18 5 chr1 71269571 71269788 -210923876 - AluJo SINE Alu -92 220 1 392 287 185 8 chr1 71269791 71270056 -210923608 - L1M4 LINE L1 -1200 4946 4635 24 0 0 0 chr1 71270056 71270080 -210923584 + AT_rich Low_complexity Low_complexity 1 24 0 1103 289 56 52 chr1 71270119 71270557 -210923107 + MLT1H1 LTR MaLR 53 495 -60 2192 99 0 26 chr1 71270557 71270861 -210922803 + AluSx SINE Alu 1 296 -16 1103 289 56 52 chr1 71270861 71270907 -210922757 + MLT1H1 LTR MaLR 495 539 -16 2490 69 0 3 chr1 71270996 71271300 -210922364 + AluY SINE Alu 1 303 -8 2207 119 0 0 chr1 71271311 71271604 -210922060 + AluSq SINE Alu 1 293 -20 353 242 32 0 chr1 71271725 71271820 -210921844 - L1MEd LINE L1 -5081 1038 941 1995 143 0 31 chr1 71271828 71272149 -210921515 - AluJb SINE Alu -1 311 1 452 248 219 15 chr1 71272705 71272908 -210920756 - L1ME3A LINE L1 -285 5881 5713 889 64 0 0 chr1 71273178 71273288 -210920376 + AluY SINE Alu 193 302 -9 382 367 183 12 chr1 71273318 71273825 -210919839 - L2 LINE L2 -1167 2147 1554 290 234 255 14 chr1 71273868 71274009 -210919655 - L2 LINE L2 -16 3297 3123 5900 75 20 16 chr1 71274043 71274891 -210918773 + L1PA14 LINE L1 5313 6160 -1 24 0 0 0 chr1 71274903 71274927 -210918737 + AT_rich Low_complexity Low_complexity 1 24 0 379 249 158 19 chr1 71275148 71275357 -210918307 + L2 LINE L2 3076 3313 0 238 189 75 19 chr1 71276463 71276516 -210917148 + L2 LINE L2 3203 3258 -14 371 304 75 93 chr1 71276950 71277282 -210916382 - L2 LINE L2 0 3313 2988 * 614 218 47 128 chr1 71277264 71277342 -210916322 - L2 LINE L2 -549 2765 2682 2419 81 3 0 chr1 71277342 71277639 -210916025 - AluSp SINE Alu -15 298 1 614 218 47 128 chr1 71277639 71277794 -210915870 - L2 LINE L2 -632 2682 2551 3844 282 70 37 chr1 71277850 71278427 -210915237 - L2 LINE L2 -1035 2279 1722 3574 119 14 37 chr1 71278427 71279017 -210914647 - L1MA3 LINE L1 -2 6303 5728 3844 282 70 37 chr1 71279017 71279638 -210914026 - L2 LINE L2 -1592 1722 1123 2231 123 0 0 chr1 71279638 71279939 -210913725 - AluSq SINE Alu -12 301 1 3844 282 70 37 chr1 71279939 71280167 -210913497 - L2 LINE L2 -2191 1123 798 1654 116 13 9 chr1 71280167 71280392 -210913272 + MER30 DNA MER1_type 1 226 -4 3844 282 70 37 chr1 71280392 71280473 -210913191 - L2 LINE L2 -2516 798 721 35 24 0 0 chr1 71280701 71280743 -210912921 + AT_rich Low_complexity Low_complexity 1 42 0 2020 77 0 0 chr1 71281951 71282199 -210911465 - AluSc SINE Alu -9 300 53 387 0 0 0 chr1 71282231 71282274 -210911390 + (TA)n Simple_repeat Simple_repeat 1 43 0 214 77 0 0 chr1 71282274 71282300 -210911364 + (T)n Simple_repeat Simple_repeat 1 26 0 919 46 0 0 chr1 71282706 71282815 -210910849 - AluY SINE Alu -10 301 193 2288 230 80 65 chr1 71282863 71283566 -210910098 + L1MC5 LINE L1 6489 7214 -747 1932 148 0 28 chr1 71283566 71283884 -210909780 + AluJo SINE Alu 1 309 -3 2288 230 80 65 chr1 71283884 71284188 -210909476 + L1MC5 LINE L1 7214 7512 -449 316 306 36 105 chr1 71284188 71284407 -210909257 + L2 LINE L2 3054 3257 -15 350 302 84 62 chr1 71284636 71285200 -210908464 - L1MC4a LINE L1 -3 6118 5531 222 37 0 0 chr1 71285278 71285305 -210908359 + (T)n Simple_repeat Simple_repeat 1 27 0 312 321 71 46 chr1 71285665 71285905 -210907759 + MIR SINE MIR 17 262 0 814 180 54 6 chr1 71286603 71286770 -210906894 + MER5B DNA MER1_type 1 175 -3 362 330 43 75 chr1 71287686 71287968 -210905696 + L2 LINE L2 2999 3271 -1 2739 29 0 0 chr1 71290025 71290334 -210903330 - AluYa5 SINE Alu -2 309 1 193 313 99 76 chr1 71290758 71291282 -210902382 + L2 LINE L2 1986 2521 -793 * 211 333 87 44 chr1 71291262 71291445 -210902219 + L2 LINE L2 2867 3057 -215 1792 206 26 24 chr1 71291505 71291845 -210901819 - MER58B DNA MER1_type 0 341 1 1587 152 134 0 chr1 71292884 71293153 -210900511 - AluJo SINE Alu -7 305 1 25 65 0 0 chr1 71293545 71293591 -210900073 + AT_rich Low_complexity Low_complexity 1 46 0 2244 106 13 7 chr1 71293862 71294164 -210899500 - AluSx SINE Alu -8 304 1 210 116 0 47 chr1 71294255 71294298 -210899366 + (TTAA)n Simple_repeat Simple_repeat 1 41 0 1374 157 0 5 chr1 71294471 71294681 -210898983 + AluSg/x SINE Alu 94 302 -10 27 49 0 0 chr1 71295520 71295561 -210898103 + AT_rich Low_complexity Low_complexity 1 41 0 27 29 0 0 chr1 71296054 71296088 -210897576 + AT_rich Low_complexity Low_complexity 1 34 0 1195 285 134 16 chr1 71296097 71296536 -210897128 + L2 LINE L2 2823 3313 0 283 171 0 110 chr1 71296915 71296997 -210896667 - Tigger2 DNA MER2_type 0 2718 2646 639 228 60 6 chr1 71297112 71297279 -210896385 + Charlie1b DNA MER1_type 34 209 -314 706 143 159 0 chr1 71297338 71297520 -210896144 + Charlie1b DNA MER1_type 310 520 -3 2125 96 13 17 chr1 71299047 71299348 -210894316 + AluSg SINE Alu 3 302 -8 249 108 0 0 chr1 71299359 71299396 -210894268 + (CA)n Simple_repeat Simple_repeat 2 38 0 1848 151 7 10 chr1 71299421 71299713 -210893951 + AluSg SINE Alu 1 291 -19 2168 60 8 0 chr1 71299713 71299980 -210893684 + AluY SINE Alu 31 299 -12 2445 61 3 0 chr1 71300790 71301083 -210892581 - AluY SINE Alu -17 294 1 203 156 0 0 chr1 71301495 71301527 -210892137 + (CATATA)n Simple_repeat Simple_repeat 4 35 0 1504 157 52 21 chr1 71303412 71303698 -210889966 - AluJb SINE Alu -17 295 1 1966 164 0 7 chr1 71304147 71304451 -210889213 + AluJb SINE Alu 1 302 -10 2495 54 0 7 chr1 71305245 71305543 -210888121 + AluY SINE Alu 1 296 -15 2350 97 6 0 chr1 71306218 71306529 -210887135 + AluSp SINE Alu 1 313 0 881 117 102 68 chr1 71306704 71306910 -210886754 + MER7A DNA MER2_type 1 211 -135 878 95 108 19 chr1 71306920 71307078 -210886586 - MER30 DNA MER1_type -55 175 4 637 151 119 0 chr1 71307082 71307208 -210886456 + MER7A DNA MER2_type 197 337 0 2124 122 3 0 chr1 71307337 71307631 -210886033 - AluSx SINE Alu -17 295 1 212 184 20 0 chr1 71307680 71307729 -210885935 + (CA)n Simple_repeat Simple_repeat 2 51 0 708 249 47 32 chr1 71308812 71309034 -210884630 - MIR SINE MIR -2 260 34 2067 136 10 3 chr1 71309047 71309348 -210884316 - AluSx SINE Alu -9 303 1 610 233 136 27 chr1 71309596 71309897 -210883767 - MER46C DNA MER2_type -3 335 2 1901 144 17 10 chr1 71310311 71310610 -210883054 - AluJb SINE Alu -11 301 1 204 293 57 50 chr1 71311996 71312136 -210881528 - MIR SINE MIR -26 236 96 473 214 126 0 chr1 71312358 71312461 -210881203 + FLAM_A SINE Alu 4 119 -14 24 0 0 0 chr1 71312941 71312965 -210880699 + AT_rich Low_complexity Low_complexity 1 24 0 2292 69 0 0 chr1 71313788 71314063 -210879601 + AluSg SINE Alu 16 290 -20 759 268 144 17 chr1 71317547 71317876 -210875788 - L2 LINE L2 -247 3066 2780 2367 65 3 0 chr1 71317876 71318170 -210875494 + AluSp SINE Alu 1 295 -18 759 268 144 17 chr1 71318170 71318339 -210875325 - L2 LINE L2 -533 2780 2476 1184 138 69 58 chr1 71318346 71318606 -210875058 + AluJb SINE Alu 41 303 -9 245 305 214 0 chr1 71318620 71318751 -210874913 - L2 LINE L2 -865 2449 2291 1187 195 72 39 chr1 71319689 71320022 -210873642 + MER2 DNA MER2_type 1 344 0 2236 99 14 0 chr1 71320090 71320384 -210873280 - AluSg SINE Alu -12 298 1 1528 253 122 11 chr1 71320777 71321235 -210872429 - MLT1J LTR MaLR 0 511 3 769 291 93 12 chr1 71321363 71321696 -210871968 + LTR16A LTR ERVL 1 360 -90 3296 267 86 24 chr1 71321817 71323107 -210870557 + HERV16 LTR ERVL 87 1456 -3540 1871 260 58 16 chr1 71323168 71323775 -210869889 + HERV16 LTR ERVL 1601 2232 -2764 1095 185 7 91 chr1 71323805 71324091 -210869573 - MLT1A2 LTR MaLR -2 372 111 1402 177 122 6 chr1 71324093 71324404 -210869260 + MLT1A1 LTR MaLR 19 365 0 583 143 0 0 chr1 71324406 71324497 -210869167 - MLT1A2 LTR MaLR -265 109 19 1150 268 38 81 chr1 71324509 71324865 -210868799 + HERV16 LTR ERVL 2253 2623 -2373 1636 182 18 11 chr1 71324865 71325140 -210868524 + AluJo SINE Alu 1 277 -35 2196 81 0 0 chr1 71325141 71325412 -210868252 - AluY SINE Alu -5 306 36 1150 268 38 81 chr1 71325412 71325587 -210868077 + HERV16 LTR ERVL 2622 2763 -2233 524 203 53 92 chr1 71325601 71325741 -210867923 + HAL1 LINE L1 2192 2323 -184 1666 164 14 14 chr1 71325741 71326064 -210867600 - AluJb SINE Alu 0 323 1 524 203 53 92 chr1 71326064 71326148 -210867516 + HAL1 LINE L1 2323 2409 -98 890 153 0 0 chr1 71326188 71326319 -210867345 - FLAM_C SINE Alu -2 131 1 1234 162 40 5 chr1 71327432 71327654 -210866010 - AluJo SINE Alu -2 310 81 1834 198 59 89 chr1 71327655 71327875 -210865789 + LTR8A LTR ERV1 75 300 -427 2309 172 32 58 chr1 71327875 71328374 -210865290 + MER66B LTR ERV1 1 486 0 1834 198 59 89 chr1 71328374 71328826 -210864838 + LTR8A LTR ERV1 300 727 0 294 206 268 0 chr1 71329017 71329114 -210864550 - MLT1H LTR MaLR -28 521 399 1530 158 4 0 chr1 71329400 71329640 -210864024 - AluJb SINE Alu -13 299 59 27 29 0 0 chr1 71329855 71329889 -210863775 + AT_rich Low_complexity Low_complexity 1 34 0 2253 93 0 0 chr1 71329955 71330246 -210863418 - AluSq SINE Alu -22 291 1 1295 81 0 0 chr1 71330533 71330694 -210862970 - AluSg/x SINE Alu -10 302 142 207 108 0 27 chr1 71330792 71330829 -210862835 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 451 232 10 0 chr1 71331039 71331138 -210862526 - AluJ/FLAM SINE Alu -212 100 1 2086 111 14 0 chr1 71331919 71332208 -210861456 + AluJo SINE Alu 1 293 -19 796 122 0 58 chr1 71332973 71333112 -210860552 + FLAM_C SINE Alu 1 131 -2 5693 126 51 38 chr1 71333483 71333776 -210859888 - Tigger2 DNA MER2_type -194 2524 2236 660 208 104 0 chr1 71333776 71333920 -210859744 + FAM SINE Alu 1 159 -16 5693 126 51 38 chr1 71333920 71333936 -210859728 - Tigger2 DNA MER2_type -482 2236 2222 2159 121 0 7 chr1 71333936 71334242 -210859422 + AluSx SINE Alu 1 304 -8 5693 126 51 38 chr1 71334242 71334969 -210858695 - Tigger2 DNA MER2_type -496 2222 1473 697 213 92 18 chr1 71335032 71335196 -210858468 + AluJo SINE Alu 129 304 -8 394 138 46 23 chr1 71335196 71335283 -210858381 - L1MB4 LINE L1 -5 6175 6087 262 360 110 50 chr1 71335461 71335761 -210857903 + L2 LINE L2 2645 2962 -352 823 246 22 35 chr1 71336068 71336146 -210857518 + MIR SINE MIR 34 111 -151 1685 171 50 17 chr1 71336146 71336508 -210857156 + MLT1A2 LTR MaLR 1 374 0 823 246 22 35 chr1 71336508 71336661 -210857003 + MIR SINE MIR 111 262 0 787 271 6 0 chr1 71336716 71336886 -210856778 - MER5A DNA MER1_type -13 176 6 16122 126 10 29 chr1 71336891 71338952 -210854712 - L1PA10 LINE L1 -2 6166 4067 2200 134 0 0 chr1 71338952 71339243 -210854421 + AluSx SINE Alu 1 291 -21 16122 126 10 29 chr1 71339243 71340361 -210853303 - L1PA10 LINE L1 -2101 4067 3044 2059 127 7 13 chr1 71340361 71340660 -210853004 + AluSx SINE Alu 1 297 -15 16122 126 10 29 chr1 71340660 71341081 -210852583 - L1PA10 LINE L1 -3124 3044 2617 14458 75 11 3 chr1 71341256 71344745 -210848919 - L1PA7 LINE L1 0 6154 2641 1803 108 0 4 chr1 71345042 71345291 -210848373 - AluSc SINE Alu -9 300 53 387 0 0 0 chr1 71345323 71345366 -210848298 + (TA)n Simple_repeat Simple_repeat 1 43 0 1248 175 38 62 chr1 71345366 71345657 -210848007 - AluJo SINE Alu 0 312 29 256 281 0 0 chr1 71345831 71345888 -210847776 + (CA)n Simple_repeat Simple_repeat 2 58 0 2533 74 0 0 chr1 71346201 71346510 -210847154 + AluY SINE Alu 1 309 -2 872 175 0 13 chr1 71347363 71347517 -210846147 - FRAM SINE Alu -7 169 18 429 207 0 35 chr1 71347662 71347749 -210845915 + L2 LINE L2 3189 3272 0 24 32 0 0 chr1 71348412 71348443 -210845221 + AT_rich Low_complexity Low_complexity 1 31 0 857 158 0 0 chr1 71349077 71349210 -210844454 - FLAM_C SINE Alu 0 133 1 194 167 185 56 chr1 71349619 71349673 -210843991 + MIR SINE MIR 8 68 -194 205 338 0 0 chr1 71349675 71349743 -210843921 + MIR SINE MIR 195 262 0 412 321 55 45 chr1 71349850 71350140 -210843524 + L2 LINE L2 2540 2832 -482 357 302 198 0 chr1 71350650 71350776 -210842888 + L2 LINE L2 3122 3272 0 2874 170 76 6 chr1 71351730 71352254 -210841410 + MER68 LTR ERV1 1 561 -1 287 264 55 0 chr1 71352392 71352483 -210841181 + L2 LINE L2 2265 2360 -954 210 234 0 62 chr1 71352920 71352984 -210840680 - L2 LINE L2 -83 3230 3171 290 321 198 5 chr1 71353070 71353257 -210840407 - L2 LINE L2 -195 3118 2896 187 273 45 15 chr1 71353251 71353317 -210840347 + MIR3 SINE MIR 138 205 -3 * 404 230 77 71 chr1 71353973 71354169 -210839495 - L1ME4a LINE L1 -135 5986 5790 2061 114 60 0 chr1 71354244 71354525 -210839139 - AluSx SINE Alu -14 298 1 1562 240 143 28 chr1 71354602 71355570 -210838094 + L1MDa LINE L1 52 1295 -5245 1376 123 0 0 chr1 71355680 71355892 -210837772 + L1PB1 LINE L1 2110 2321 -3825 376 115 49 0 chr1 71356011 71356072 -210837592 - AluS SINE Alu -239 64 1 2228 98 0 13 chr1 71356111 71356416 -210837248 + AluSx SINE Alu 1 301 -11 11611 135 68 58 chr1 71356497 71357254 -210836410 + Tigger2 DNA MER2_type 1 749 -1969 2125 134 0 0 chr1 71357254 71357560 -210836104 - AluSg SINE Alu -4 306 1 11611 135 68 58 chr1 71357560 71358360 -210835304 + Tigger2 DNA MER2_type 749 1591 -1127 1920 129 54 0 chr1 71358360 71358655 -210835009 + AluSx SINE Alu 1 311 -1 11611 135 68 58 chr1 71358655 71359356 -210834308 + Tigger2 DNA MER2_type 1591 2283 -435 9106 154 15 28 chr1 71359356 71359789 -210833875 + L1PB1 LINE L1 3530 3967 -2184 2474 70 0 0 chr1 71359789 71360090 -210833574 + AluSx SINE Alu 1 301 -11 9106 154 15 28 chr1 71360090 71362258 -210831406 + L1PB1 LINE L1 3967 6096 -55 1878 117 11 0 chr1 71362258 71362522 -210831142 + AluSg SINE Alu 35 301 -9 9106 154 15 28 chr1 71362522 71362577 -210831087 + L1PB1 LINE L1 6096 6150 -1 2616 136 35 22 chr1 71362577 71363032 -210830632 + Tigger2 DNA MER2_type 2258 2718 0 1526 153 62 42 chr1 71363090 71363378 -210830286 + AluJo SINE Alu 1 294 -18 197 65 32 0 chr1 71363798 71363829 -210829835 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2082 79 4 14 chr1 71363832 71364112 -210829552 - AluSx SINE Alu -31 281 5 2329 171 14 0 chr1 71364480 71364849 -210828815 + MER68 LTR ERV1 178 551 -11 428 337 65 16 chr1 71364859 71365043 -210828621 - MIR SINE MIR -60 202 10 1751 180 10 6 chr1 71365284 71365595 -210828069 - AluJo SINE Alu 0 312 1 249 281 0 31 chr1 71366107 71366171 -210827493 + 7SK RNA RNA 1 62 -131 497 241 168 0 chr1 71368702 71368839 -210824825 - MER5A DNA MER1_type -21 168 9 22 35 0 0 chr1 71369646 71369675 -210823989 + AT_rich Low_complexity Low_complexity 1 29 0 2121 114 4 0 chr1 71370121 71370423 -210823241 - AluSx SINE Alu 0 303 1 426 167 0 0 chr1 71370709 71370775 -210822889 - AluSp SINE Alu -126 187 122 1877 164 0 10 chr1 71371380 71371679 -210821985 - AluJb SINE Alu 0 312 17 539 282 187 26 chr1 71371752 71372025 -210821639 - L3 LINE CR1 -295 1282 966 318 241 38 13 chr1 71372358 71372437 -210821227 - L2 LINE L2 -1 3312 3232 2430 56 0 3 chr1 71372437 71372740 -210820924 + AluY SINE Alu 1 302 -9 789 279 65 4 chr1 71372758 71372987 -210820677 - L2 LINE L2 -248 3065 2823 801 234 108 31 chr1 71373832 71374054 -210819610 - MIR SINE MIR 0 262 24 1957 89 111 0 chr1 71374055 71374325 -210819339 - AluSp SINE Alu -13 300 1 1275 206 12 84 chr1 71374721 71375041 -210818623 - AluJo SINE Alu -15 297 1 1638 184 23 17 chr1 71375292 71375591 -210818073 - AluJb SINE Alu -11 301 1 1130 172 15 5 chr1 71376217 71376415 -210817249 - AluJo SINE Alu -29 283 84 1716 170 24 10 chr1 71376568 71376857 -210816807 + AluJb SINE Alu 1 293 -19 558 239 0 49 chr1 71378529 71378713 -210814951 + MER104 DNA MER2_type 3 177 -3 2263 71 0 0 chr1 71380878 71381158 -210812506 + AluY SINE Alu 1 280 -31 2145 111 0 3 chr1 71381295 71381592 -210812072 + AluSx SINE Alu 1 296 -16 1093 264 72 54 chr1 71381743 71382688 -210810976 - L1ME3A LINE L1 -93 6077 5122 189 0 0 0 chr1 71382721 71382742 -210810922 + (A)n Simple_repeat Simple_repeat 1 21 0 482 217 94 0 chr1 71382779 71382885 -210810779 + FLAM_A SINE Alu 13 128 -14 300 253 10 30 chr1 71382885 71382984 -210810680 - L1ME3A LINE L1 -1147 4999 4903 228 270 40 0 chr1 71382983 71383057 -210810607 - L1ME3A LINE L1 -1169 4977 4901 * 904 253 165 44 chr1 71383117 71383571 -210810093 - L1ME3A LINE L1 -1251 4895 4497 2259 92 7 0 chr1 71383571 71383866 -210809798 - AluSp SINE Alu -16 297 1 904 253 165 44 chr1 71383866 71383925 -210809739 - L1ME3A LINE L1 -1649 4497 4447 1578 157 51 15 chr1 71383925 71384272 -210809392 - AluJo SINE Alu 0 357 1 904 253 165 44 chr1 71384272 71384639 -210809025 - L1ME3A LINE L1 -1699 4447 3906 1961 156 0 3 chr1 71384719 71385020 -210808644 + AluJo SINE Alu 7 306 -6 234 0 0 0 chr1 71385030 71385056 -210808608 + (TG)n Simple_repeat Simple_repeat 2 27 0 1065 141 58 15 chr1 71385102 71385308 -210808356 + MER2 DNA MER2_type 40 254 -91 235 274 115 0 chr1 71385383 71385496 -210808168 - L1ME3A LINE L1 -2398 3748 3623 2363 66 13 13 chr1 71385537 71385841 -210807823 - AluY SINE Alu -7 304 1 1652 152 15 0 chr1 71386144 71386413 -210807251 + AluSx SINE Alu 27 299 -13 262 288 0 0 chr1 71386639 71386705 -210806959 - L1ME3A LINE L1 -3115 3031 2966 2358 70 3 3 chr1 71386827 71387126 -210806538 + AluSg SINE Alu 1 299 -11 187 314 86 48 chr1 71387152 71387257 -210806407 - L2 LINE L2 -43 3229 3121 322 186 34 0 chr1 71387405 71387464 -210806200 - AluS SINE Alu -13 289 229 237 33 0 0 chr1 71387472 71387502 -210806162 + (CA)n Simple_repeat Simple_repeat 2 31 0 1736 155 11 7 chr1 71387503 71387787 -210805877 - AluJb SINE Alu -27 285 1 1196 142 113 0 chr1 71388193 71388405 -210805259 - MER46A DNA MER2_type 0 236 1 335 245 112 0 chr1 71388551 71388649 -210805015 + MIR SINE MIR 120 228 -34 700 220 59 32 chr1 71389411 71389597 -210804067 + Charlie1b DNA MER1_type 19 209 -314 762 147 158 0 chr1 71389654 71389838 -210803826 + Charlie1b DNA MER1_type 308 520 -3 2115 96 13 17 chr1 71391371 71391672 -210801992 + AluSg SINE Alu 3 302 -8 249 108 0 0 chr1 71391683 71391720 -210801944 + (CA)n Simple_repeat Simple_repeat 2 38 0 1796 157 0 0 chr1 71391745 71392019 -210801645 + AluSg SINE Alu 1 274 -36 2018 68 0 0 chr1 71392037 71392287 -210801377 + AluY SINE Alu 31 280 -31 216 246 0 0 chr1 71392423 71392492 -210801172 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1586 166 0 107 chr1 71392900 71393238 -210800426 - AluJo SINE Alu -10 302 1 955 274 8 8 chr1 71393827 71394061 -210799603 - MIR SINE MIR -21 241 8 1243 185 0 38 chr1 71394770 71395008 -210798656 + AluJb SINE Alu 3 231 -81 1926 156 3 0 chr1 71395129 71395418 -210798246 - AluJo SINE Alu -12 300 11 931 112 0 0 chr1 71398150 71398275 -210795389 + AluJb SINE Alu 1 125 -187 203 163 47 0 chr1 71398278 71398321 -210795343 + A-rich Low_complexity Low_complexity 2 46 0 188 376 32 21 chr1 71399640 71399733 -210793931 - MIR SINE MIR -146 116 23 853 332 165 22 chr1 71399848 71400628 -210793036 + L2 LINE L2 1854 2745 -569 998 241 137 11 chr1 71400821 71401083 -210792581 + AluJo SINE Alu 1 295 -7 251 239 46 46 chr1 71401320 71401429 -210792235 - MIR SINE MIR -7 255 147 2349 103 0 0 chr1 71401641 71401943 -210791721 - AluSx SINE Alu -10 302 1 1702 168 0 29 chr1 71402430 71402740 -210790924 + AluJo SINE Alu 1 301 -11 468 258 132 36 chr1 71403210 71403567 -210790097 + HAL1b LINE L1 66 456 -892 593 261 7 7 chr1 71403724 71403877 -210789787 + FRAM SINE Alu 1 146 -30 683 189 0 0 chr1 71403910 71404042 -210789622 + FLAM_C SINE Alu 5 136 -7 3785 169 88 37 chr1 71404448 71405454 -210788210 - MER106B DNA MER1_type -1 1058 1 307 282 70 92 chr1 71405700 71405984 -210787680 + L1M4 LINE L1 2191 2468 -3678 1768 146 3 14 chr1 71406282 71406570 -210787094 - AluJo SINE Alu -16 296 12 2534 47 0 0 chr1 71406606 71406902 -210786762 + AluY SINE Alu 1 296 -15 204 40 0 0 chr1 71407254 71407279 -210786385 + (CATA)n Simple_repeat Simple_repeat 2 26 0 483 234 196 33 chr1 71407741 71407925 -210785739 + MIR SINE MIR 1 214 -48 389 310 37 12 chr1 71409012 71409239 -210784425 + MLT1J LTR MaLR 5 300 -211 1991 116 0 66 chr1 71409311 71409504 -210784160 - AluSx SINE Alu -14 298 132 2206 88 3 0 chr1 71409504 71409831 -210783833 + AluSp SINE Alu 1 328 0 1991 116 0 66 chr1 71409831 71409955 -210783709 - AluSx SINE Alu -180 132 1 912 266 14 0 chr1 71410152 71410359 -210783305 + MIR SINE MIR 51 260 -2 761 133 37 7 chr1 71411455 71411590 -210782074 + L1MA9 LINE L1 6174 6312 0 1561 164 42 4 chr1 71411919 71412182 -210781482 + AluJb SINE Alu 33 305 -7 394 233 150 17 chr1 71412501 71412681 -210780983 - L1MEd LINE L1 -5282 837 634 500 219 0 59 chr1 71412690 71412809 -210780855 + MER81 DNA DNA 1 112 -2 203 353 60 23 chr1 71413042 71413175 -210780489 + L2 LINE L2 3172 3309 -4 27 29 0 0 chr1 71413260 71413294 -210780370 + AT_rich Low_complexity Low_complexity 1 34 0 350 300 149 46 chr1 71413785 71414020 -210779644 + L2 LINE L2 2778 3037 -276 21 0 0 0 chr1 71414386 71414407 -210779257 + AT_rich Low_complexity Low_complexity 1 21 0 185 207 0 17 chr1 71414515 71414573 -210779091 + T-rich Low_complexity Low_complexity 3 59 0 305 273 45 0 chr1 71415279 71415367 -210778297 - MIR SINE MIR -130 132 41 1237 184 49 52 chr1 71415476 71415781 -210777883 + AluJb SINE Alu 1 304 -8 1299 121 53 5 chr1 71415794 71416000 -210777664 + L1MC1 LINE L1 6118 6333 0 22 0 0 0 chr1 71416849 71416871 -210776793 + AT_rich Low_complexity Low_complexity 1 22 0 366 331 31 0 chr1 71417364 71417491 -210776173 - MIR SINE MIR -12 250 120 523 285 126 34 chr1 71417536 71417743 -210775921 - MIR SINE MIR -31 231 6 402 296 92 58 chr1 71417903 71418109 -210775555 - MIR SINE MIR -48 214 2 1083 281 70 45 chr1 71418466 71419184 -210774480 + L1ME2 LINE L1 4533 5268 -878 626 229 101 6 chr1 71419185 71419364 -210774300 - MER105 DNA DNA -8 196 1 754 314 277 22 chr1 71419446 71420114 -210773550 + L2 LINE L2 27 864 -2450 192 40 0 0 chr1 71420138 71420163 -210773501 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2267 93 7 0 chr1 71420163 71420464 -210773200 + AluSp SINE Alu 1 303 -10 748 304 110 5 chr1 71420551 71420942 -210772722 + L1ME2 LINE L1 5486 5917 -247 1819 153 3 17 chr1 71421002 71421138 -210772526 + AluSx SINE Alu 1 137 -175 2374 70 0 10 chr1 71421138 71421439 -210772225 + AluY SINE Alu 1 298 -13 1819 153 3 17 chr1 71421439 71421590 -210772074 + AluSx SINE Alu 137 284 -28 1493 242 131 100 chr1 71421692 71421855 -210771809 + L1ME3A LINE L1 2138 2294 -3876 243 0 0 0 chr1 71421855 71421882 -210771782 + (CA)n Simple_repeat Simple_repeat 2 28 0 1493 242 131 100 chr1 71421882 71422625 -210771039 + L1ME3A LINE L1 2294 3012 -3158 7029 51 7 6 chr1 71422625 71424109 -210769555 + L1PA7 LINE L1 4661 6151 -3 1493 242 131 100 chr1 71424109 71424544 -210769120 + L1ME3A LINE L1 3012 3432 -2738 1948 145 0 0 chr1 71424544 71424859 -210768805 + AluSx SINE Alu 3 317 0 1493 242 131 100 chr1 71424859 71426437 -210767227 + L1ME3A LINE L1 3432 4960 -1210 2190 96 4 0 chr1 71426437 71426717 -210766947 + AluY SINE Alu 1 281 -30 191 36 36 0 chr1 71426721 71426749 -210766915 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1493 242 131 100 chr1 71426749 71427454 -210766210 + L1ME3A LINE L1 4962 5881 -289 2109 119 0 13 chr1 71427466 71427768 -210765896 + AluSx SINE Alu 1 298 -14 27 62 0 0 chr1 71427782 71427830 -210765834 + AT_rich Low_complexity Low_complexity 1 48 0 2139 110 0 10 chr1 71427973 71428265 -210765399 - AluSx SINE Alu -23 289 1 4004 187 60 22 chr1 71428696 71428898 -210764766 + L1MB7 LINE L1 5093 5286 -898 1722 181 0 13 chr1 71428898 71429197 -210764467 - AluJb SINE Alu -17 295 1 4004 187 60 22 chr1 71429197 71430043 -210763621 + L1MB7 LINE L1 5286 6173 -11 4170 23 2 27 chr1 71430328 71430847 -210762817 + L1PA4 LINE L1 5650 6155 0 222 358 0 0 chr1 71431578 71431645 -210762019 + L2 LINE L2 3191 3257 -15 1019 251 47 122 chr1 71434771 71435012 -210758652 - L2 LINE L2 -1 3312 3055 1920 136 29 0 chr1 71435012 71435291 -210758373 - AluSx SINE Alu -25 287 1 1019 251 47 122 chr1 71435291 71435306 -210758358 - L2 LINE L2 -258 3055 3040 1685 151 39 25 chr1 71435306 71435591 -210758073 - AluJo SINE Alu -23 289 1 1019 251 47 122 chr1 71435591 71435867 -210757797 - L2 LINE L2 -273 3040 2819 308 250 71 27 chr1 71435902 71436014 -210757650 + MLT1L LTR MaLR 373 489 -126 384 133 100 11 chr1 71436050 71436140 -210757524 + LTR9B LTR ERV1 463 560 -84 28 0 0 0 chr1 71436140 71436168 -210757496 + AT_rich Low_complexity Low_complexity 1 28 0 2037 142 0 3 chr1 71436961 71437256 -210756408 - AluSx SINE Alu -18 294 1 1797 159 0 22 chr1 71437449 71437763 -210755901 + AluSx SINE Alu 6 312 0 2032 129 13 0 chr1 71437923 71438226 -210755438 + AluSx SINE Alu 1 307 -5 425 283 0 14 chr1 71438305 71438450 -210755214 - MER104 DNA Tc2 -34 146 4 22 88 0 0 chr1 71438919 71438976 -210754688 + AT_rich Low_complexity Low_complexity 1 57 0 396 302 87 13 chr1 71440165 71440314 -210753350 + LTR16A LTR ERVL 286 445 -5 749 246 81 44 chr1 71440382 71440413 -210753251 + MIR SINE MIR 3 31 -231 2236 81 0 19 chr1 71440413 71440720 -210752944 + AluSc SINE Alu 1 301 -8 749 246 81 44 chr1 71440720 71440936 -210752728 + MIR SINE MIR 31 259 -3 208 297 148 32 chr1 71441507 71441662 -210752002 + L2 LINE L2 3118 3290 -23 208 304 8 88 chr1 71441911 71442036 -210751628 - MER5B DNA MER1_type -37 141 27 1747 164 3 33 chr1 71443282 71443587 -210750077 - AluJo SINE Alu -16 296 1 237 323 86 32 chr1 71443651 71443744 -210749920 + L2 LINE L2 3199 3296 -17 471 294 0 0 chr1 71444276 71444385 -210749279 + MIR SINE MIR 16 124 -138 2495 133 53 5 chr1 71444498 71444912 -210748752 + Tigger2a DNA MER2_type 1 434 0 1632 154 21 32 chr1 71445006 71445291 -210748373 - AluJo SINE Alu -30 282 1 22 0 0 0 chr1 71448764 71448786 -210744878 + AT_rich Low_complexity Low_complexity 1 22 0 365 310 26 9 chr1 71448963 71449076 -210744588 - MER5A DNA MER1_type -6 183 69 467 258 3 75 chr1 71449240 71449394 -210744270 + MER5B DNA MER1_type 10 157 -32 599 295 63 5 chr1 71449559 71449756 -210743908 + MIR SINE MIR 34 247 -15 380 330 43 75 chr1 71501328 71501610 -210692054 - L2 LINE L2 -1 3271 2999 191 225 0 0 chr1 71501824 71501864 -210691800 - L2 LINE L2 -3 3310 3271 736 198 48 0 chr1 71502526 71502693 -210690971 - MER5B DNA MER1_type -3 175 1 367 329 71 46 chr1 71503391 71503631 -210690033 - MIR SINE MIR 0 262 17 222 37 0 0 chr1 71503991 71504018 -210689646 + (A)n Simple_repeat Simple_repeat 1 27 0 400 298 68 63 chr1 71504096 71504492 -210689172 + L1MC4a LINE L1 5531 5928 -1880 319 313 35 100 chr1 71504881 71505111 -210688553 - L2 LINE L2 -4 3268 3054 2202 234 78 63 chr1 71505111 71505415 -210688249 - L1MC5 LINE L1 -449 7512 7214 1892 148 0 28 chr1 71505415 71505733 -210687931 - AluJo SINE Alu -3 309 1 2202 234 78 63 chr1 71505733 71506436 -210687228 - L1MC5 LINE L1 -747 7214 6489 902 46 0 0 chr1 71506484 71506593 -210687071 + AluY SINE Alu 193 301 -10 442 367 183 12 chr1 71506623 71507130 -210686534 - L2 LINE L2 -1167 2147 1554 306 234 255 14 chr1 71507173 71507314 -210686350 - L2 LINE L2 -16 3297 3123 5722 77 20 16 chr1 71507348 71508196 -210685468 + L1PA14 LINE L1 5313 6160 -1 24 0 0 0 chr1 71508208 71508232 -210685432 + AT_rich Low_complexity Low_complexity 1 24 0 420 249 158 19 chr1 71508453 71508662 -210685002 + L2 LINE L2 3076 3313 0 231 246 85 25 chr1 71509211 71509329 -210684335 + L1ME4a LINE L1 5209 5333 -813 540 263 172 0 chr1 71509464 71509753 -210683911 + L1ME4a LINE L1 5502 5840 -296 2267 99 0 3 chr1 71509979 71510283 -210683381 + AluSq SINE Alu 1 303 -10 292 280 75 0 chr1 71510415 71510508 -210683156 + MER33 DNA MER1_type 1 100 -224 290 250 83 61 chr1 71511384 71511516 -210682148 - L2 LINE L2 0 3313 3179 868 280 39 4 chr1 71512002 71512234 -210681430 - MIR SINE MIR -21 241 2 1789 186 0 0 chr1 71512341 71512636 -210681028 + AluJo SINE Alu 4 298 -14 1038 224 69 12 chr1 71512807 71513052 -210680612 - MIR SINE MIR -1 261 3 555 206 65 0 chr1 71513238 71513345 -210680319 + FLAM_C SINE Alu 14 127 -16 620 284 77 16 chr1 71515609 71515792 -210677872 + MIR SINE MIR 8 201 -61 * 986 308 123 23 chr1 71515789 71516383 -210677281 + L2 LINE L2 2678 3313 0 265 336 125 0 chr1 71516925 71517053 -210676611 - MIR3 SINE MIR -16 192 49 514 304 40 20 chr1 71517943 71518196 -210675468 + L1MC4 LINE L1 7593 7850 -192 302 184 0 0 chr1 71518204 71518253 -210675411 + AluSc SINE Alu 238 286 -13 242 247 155 72 chr1 71519093 71519190 -210674474 - L2 LINE L2 0 3272 3168 28 29 0 0 chr1 71519510 71519545 -210674119 + AT_rich Low_complexity Low_complexity 1 35 0 25 75 0 0 chr1 71520054 71520107 -210673557 + AT_rich Low_complexity Low_complexity 1 53 0 25 31 0 0 chr1 71520133 71520165 -210673499 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 71522588 71522617 -210671047 + AT_rich Low_complexity Low_complexity 1 29 0 1948 120 38 0 chr1 71523617 71523908 -210669756 + AluSx SINE Alu 1 302 -10 1832 167 0 0 chr1 71524499 71524781 -210668883 + AluJb SINE Alu 9 290 -22 188 341 49 0 chr1 71524930 71525012 -210668652 + L2 LINE L2 2767 2852 -462 192 179 26 0 chr1 71525572 71525611 -210668053 - L2 LINE L2 -4 3309 3270 190 282 29 107 chr1 71526128 71526231 -210667433 + MIR SINE MIR 118 212 -50 2145 90 0 55 chr1 71526529 71526840 -210666824 - AluSg SINE Alu -16 294 1 1540 203 58 62 chr1 71527005 71527151 -210666513 + Charlie4a DNA MER1_type 44 189 -1772 204 40 0 0 chr1 71527151 71527176 -210666488 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4812 38 10 0 chr1 71527176 71527756 -210665908 - L1PA7 LINE L1 -18 6136 5551 1540 203 58 62 chr1 71527756 71527992 -210665672 + Charlie4a DNA MER1_type 188 427 -1534 1157 162 54 9 chr1 71527992 71528214 -210665450 - MER46A DNA MER2_type 0 236 5 1540 203 58 62 chr1 71528214 71528296 -210665368 + Charlie4a DNA MER1_type 427 508 0 1876 145 0 35 chr1 71528554 71528865 -210664799 + AluSx SINE Alu 1 300 -12 426 252 0 23 chr1 71528865 71528996 -210664668 + L1MC5 LINE L1 7702 7829 -132 1492 107 9 9 chr1 71529018 71529251 -210664413 + L1PA8 LINE L1 5940 6172 0 228 271 0 0 chr1 71530571 71530619 -210663045 + MIR SINE MIR 102 149 -113 364 237 99 38 chr1 71531314 71531445 -210662219 - MIR SINE MIR 0 262 124 960 173 0 114 chr1 71531467 71531704 -210661960 + MER6B DNA MER2_type 1 210 0 23 33 0 0 chr1 71533070 71533100 -210660564 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 71533179 71533213 -210660451 + AT_rich Low_complexity Low_complexity 1 34 0 975 279 105 21 chr1 71533452 71533871 -210659793 + HAL1 LINE L1 1405 1858 -649 530 321 53 11 chr1 71533973 71534163 -210659501 - L2 LINE L2 -493 2821 2624 1566 164 36 7 chr1 71534163 71534496 -210659168 + MER33 DNA MER1_type 1 324 0 621 309 97 14 chr1 71534501 71534779 -210658885 - L2 LINE L2 -717 2597 2297 259 339 76 0 chr1 71534769 71534887 -210658777 - MER91C DNA MER1_type -9 131 5 * 456 308 68 47 chr1 71535013 71535247 -210658417 + MIR SINE MIR 8 246 -16 1625 153 50 56 chr1 71536046 71536386 -210657278 - MER44D DNA MER2_type -1 608 1 1982 117 28 11 chr1 71536729 71537011 -210656653 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr1 71537014 71537037 -210656627 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chr1 71537108 71537144 -210656520 + AT_rich Low_complexity Low_complexity 1 36 0 2376 73 0 13 chr1 71537336 71537651 -210656013 + AluY SINE Alu 1 311 0 228 152 20 61 chr1 71537842 71537941 -210655723 + GA-rich Low_complexity Low_complexity 2 96 0 407 263 91 103 chr1 71538749 71538981 -210654683 + MLT1H LTR MaLR 126 354 -195 1688 166 0 50 chr1 71539188 71539386 -210654278 - AluJo SINE Alu -9 303 125 2237 95 20 0 chr1 71539386 71539691 -210653973 + AluY SINE Alu 1 311 0 1688 166 0 50 chr1 71539691 71539811 -210653853 - AluJo SINE Alu -187 125 1 196 343 0 45 chr1 71540181 71540248 -210653416 + L2 LINE L2 3250 3313 0 440 257 42 84 chr1 71540875 71541136 -210652528 + MER112 DNA MER1_type 5 254 -2 1971 95 37 14 chr1 71541435 71541730 -210651934 + AluSg SINE Alu 1 302 -8 8095 233 47 48 chr1 71542564 71544750 -210648914 + L1MB7 LINE L1 2577 4753 -1431 1688 200 21 0 chr1 71544750 71545080 -210648584 - MER1B DNA MER1_type 0 337 1 8095 233 47 48 chr1 71545080 71546440 -210647224 + L1MB7 LINE L1 4753 6113 -71 2000 143 12 0 chr1 71546442 71546764 -210646900 - MER6 DNA MER2_type 0 865 280 * 2365 176 54 18 chr1 71546762 71547205 -210646459 + LTR32 LTR ERVL 13 471 0 1303 189 44 22 chr1 71547205 71547479 -210646185 - MER6 DNA MER2_type -581 284 5 328 136 0 0 chr1 71547481 71547547 -210646117 + L1MB8 LINE L1 6110 6175 -3 2299 110 0 0 chr1 71547644 71547943 -210645721 + AluSx SINE Alu 1 299 -13 2156 135 0 0 chr1 71549436 71549733 -210643931 + AluSx SINE Alu 1 297 -15 3647 210 54 16 chr1 71550360 71551283 -210642381 + L1 LINE L1 3811 4768 -1378 239 174 0 0 chr1 71551290 71551336 -210642328 + MLT2B1 LTR ERVL 467 512 -8 25 83 0 0 chr1 71551794 71551854 -210641810 + AT_rich Low_complexity Low_complexity 1 60 0 1700 103 12 4 chr1 71552048 71552291 -210641373 + AluSc SINE Alu 49 293 -16 680 146 0 9 chr1 71552547 71552657 -210641007 - FLAM_C SINE Alu -34 109 1 1761 63 0 0 chr1 71552729 71552934 -210640730 + AluY SINE Alu 18 222 -89 317 263 45 15 chr1 71553876 71554009 -210639655 - L1ME4a LINE L1 -211 5893 5757 237 274 0 0 chr1 71554042 71554093 -210639571 + L2 LINE L2 3258 3308 -5 901 257 23 5 chr1 71554130 71554344 -210639320 + MER20 DNA MER1_type 2 219 0 387 319 132 11 chr1 71554370 71554643 -210639021 - LTR33 LTR ERVL -6 515 210 744 308 93 7 chr1 71554836 71555255 -210638409 - L1ME4a LINE L1 -749 5380 4926 668 101 71 0 chr1 71555365 71555464 -210638200 + FRAM SINE Alu 63 168 -8 1644 203 26 24 chr1 71556504 71556844 -210636820 + MER58B DNA MER1_type 1 341 0 229 339 87 44 chr1 71556904 71557087 -210636577 - L2 LINE L2 -215 3057 2867 * 246 321 93 71 chr1 71557067 71557591 -210636073 - L2 LINE L2 -793 2521 1986 193 346 53 38 chr1 71557614 71557877 -210635787 - L2 LINE L2 -1595 1719 1453 2179 104 7 7 chr1 71558015 71558313 -210635351 + AluSx SINE Alu 1 298 -14 867 159 66 33 chr1 71558521 71558703 -210634961 - L1MC2 LINE L1 -8 6336 6149 2280 130 11 22 chr1 71558727 71559095 -210634569 - THE1B LTR MaLR 0 364 1 1680 136 63 17 chr1 71559095 71559397 -210634267 - L1MC2 LINE L1 -318 6026 5711 182 245 20 0 chr1 71559528 71559577 -210634087 + L2 LINE L2 3223 3272 0 24 32 0 0 chr1 71559776 71559807 -210633857 + AT_rich Low_complexity Low_complexity 1 31 0 2305 97 0 0 chr1 71560524 71560823 -210632841 - AluSg SINE Alu -11 299 1 21 71 0 0 chr1 71561042 71561084 -210632580 + AT_rich Low_complexity Low_complexity 1 42 0 1058 255 17 41 chr1 71561348 71561642 -210632022 + L2 LINE L2 675 961 -2353 207 163 20 20 chr1 71561794 71561843 -210631821 + (TA)n Simple_repeat Simple_repeat 1 49 0 2354 145 8 0 chr1 71561848 71562191 -210631473 - L1MB4 LINE L1 -5 6175 5827 1839 171 17 0 chr1 71562191 71562483 -210631181 - AluJb SINE Alu -15 297 1 2354 145 8 0 chr1 71562483 71562539 -210631125 - L1MB4 LINE L1 -353 5827 5773 415 262 77 11 chr1 71563011 71563194 -210630470 - L1ME4a LINE L1 -1318 4811 4617 486 146 0 62 chr1 71563250 71563346 -210630318 + FLAM SINE Alu 43 132 -11 2475 56 17 0 chr1 71563389 71563691 -210629973 - AluY SINE Alu -4 307 1 2263 78 0 32 chr1 71564194 71564502 -210629162 + AluSc SINE Alu 1 298 -11 425 289 45 42 chr1 71565790 71566070 -210627594 - L1MEd LINE L1 -3776 2385 2102 2238 88 20 3 chr1 71566070 71566366 -210627298 - AluSx SINE Alu -11 301 1 425 289 45 42 chr1 71566366 71566522 -210627142 - L1MEd LINE L1 -4059 2102 1948 1018 272 87 32 chr1 71566845 71567316 -210626348 + MLT1H LTR MaLR 12 544 -5 579 247 123 47 chr1 71567330 71568006 -210625658 - L1MEd LINE L1 -4765 1545 802 505 298 12 42 chr1 71568063 71568231 -210625433 - L1MEd LINE L1 -5439 680 518 3025 192 46 20 chr1 71568947 71569639 -210624025 + L1MB8 LINE L1 5428 6137 -41 275 176 0 73 chr1 71569645 71569713 -210623951 + L1MB8 LINE L1 6110 6172 -6 2174 197 24 31 chr1 71569722 71569828 -210623836 + L1MB7 LINE L1 5727 5832 -352 2332 76 0 35 chr1 71569828 71570142 -210623522 + AluSc SINE Alu 1 303 -6 2174 197 24 31 chr1 71570142 71570337 -210623327 + L1MB7 LINE L1 5832 6027 -157 1586 178 48 58 chr1 71570337 71570731 -210622933 + MLT1B LTR MaLR 1 390 0 2174 197 24 31 chr1 71570731 71570880 -210622784 + L1MB7 LINE L1 6027 6175 -9 30 0 0 0 chr1 71572295 71572325 -210621339 + AT_rich Low_complexity Low_complexity 1 30 0 1187 229 45 136 chr1 71573686 71573930 -210619734 + L2 LINE L2 2826 2996 -317 528 208 94 0 chr1 71573930 71574036 -210619628 + FLAM_C SINE Alu 1 116 -17 1187 229 45 136 chr1 71574036 71574328 -210619336 + L2 LINE L2 2996 3313 0 7304 34 17 0 chr1 71574391 71575264 -210618400 + L1PA5 LINE L1 5126 6018 -136 189 0 0 0 chr1 71575264 71575285 -210618379 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 7304 34 17 0 chr1 71575285 71575425 -210618239 + L1PA5 LINE L1 6018 6154 0 180 0 0 0 chr1 71576039 71576059 -210617605 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 400 311 228 15 chr1 71576351 71576557 -210617107 + MIR SINE MIR 7 256 -6 1486 232 40 66 chr1 71578556 71579074 -210614590 + MLT1D LTR MaLR 1 505 0 1921 162 0 6 chr1 71579375 71579689 -210613975 - AluSx SINE Alu 0 312 1 412 370 6 0 chr1 71579786 71579948 -210613716 - MIR SINE MIR -70 192 30 701 244 48 19 chr1 71580038 71580451 -210613213 + L1MB4 LINE L1 4873 5330 -816 8483 224 76 45 chr1 71580494 71582134 -210611530 + L1MDa LINE L1 14 1601 -4939 2085 108 0 21 chr1 71582134 71582448 -210611216 + AluSx SINE Alu 1 308 0 8483 224 76 45 chr1 71582448 71582630 -210611034 + L1MDa LINE L1 1601 1776 -4764 1839 160 0 13 chr1 71582630 71582937 -210610727 + AluSx SINE Alu 1 303 -9 8483 224 76 45 chr1 71582937 71584354 -210609310 + L1MDa LINE L1 1776 3364 -3176 4113 167 5 10 chr1 71584358 71584782 -210608882 + L1MB4 LINE L1 5412 5832 -348 1839 171 17 0 chr1 71584782 71585074 -210608590 + AluJb SINE Alu 1 297 -15 4113 167 5 10 chr1 71585074 71585417 -210608247 + L1MB4 LINE L1 5832 6175 -5 207 163 20 20 chr1 71585422 71585471 -210608193 + (TA)n Simple_repeat Simple_repeat 1 49 0 1042 259 17 41 chr1 71585623 71585917 -210607747 - L2 LINE L2 -2353 961 675 21 71 0 0 chr1 71586181 71586223 -210607441 + AT_rich Low_complexity Low_complexity 1 42 0 2290 100 0 0 chr1 71586442 71586741 -210606923 + AluSg SINE Alu 1 299 -11 24 32 0 0 chr1 71587458 71587489 -210606175 + AT_rich Low_complexity Low_complexity 1 31 0 182 245 20 0 chr1 71587688 71587737 -210605927 - L2 LINE L2 0 3272 3223 1680 136 63 17 chr1 71587868 71588170 -210605494 + L1MC2 LINE L1 5711 6026 -318 2280 130 11 22 chr1 71588170 71588538 -210605126 + THE1B LTR MaLR 1 364 0 841 165 66 33 chr1 71588562 71588744 -210604920 + L1MC2 LINE L1 6149 6336 -8 2099 114 7 10 chr1 71588952 71589251 -210604413 - AluSx SINE Alu -14 298 1 2175 76 16 54 chr1 71589386 71589702 -210603962 + AluSc SINE Alu 1 304 -5 317 200 93 50 chr1 71589818 71589844 -210603820 - MER104 DNA Tc2 -1721 177 154 2219 100 0 13 chr1 71589844 71590154 -210603510 + AluY SINE Alu 1 306 -5 317 200 93 50 chr1 71590154 71590267 -210603397 - MER104 DNA Tc2 -1744 154 32 1396 120 0 10 chr1 71591495 71591695 -210601969 + AluSg/x SINE Alu 102 299 -13 2224 98 0 7 chr1 71591697 71592016 -210601648 + AluSx SINE Alu 1 317 0 445 179 42 0 chr1 71592052 71592147 -210601517 + L1MC5 LINE L1 7273 7371 -590 329 234 102 71 chr1 71592321 71592547 -210601117 + L1MC5 LINE L1 7507 7739 -222 1455 170 3 99 chr1 71592580 71592903 -210600761 + AluSq SINE Alu 9 300 -13 6080 128 189 92 chr1 71593666 71595232 -210598432 + pTR5 LTR ERV1 375 2438 0 256 302 63 0 chr1 71595367 71595430 -210598234 + L2 LINE L2 3159 3225 -47 217 283 0 0 chr1 71595430 71595490 -210598174 + GA-rich Low_complexity Low_complexity 1 60 0 308 298 147 53 chr1 71596042 71596267 -210597397 - L1MC4a LINE L1 -1731 6077 5832 338 242 63 11 chr1 71596281 71596376 -210597288 - MIR SINE MIR -9 253 154 254 214 110 76 chr1 71596469 71596614 -210597050 - L1MC4a LINE L1 -538 5821 5672 25 31 0 0 chr1 71596672 71596704 -210596960 + AT_rich Low_complexity Low_complexity 1 32 0 190 315 41 27 chr1 71596714 71596787 -210596877 - MIR SINE MIR -95 113 40 189 274 0 0 chr1 71597367 71597418 -210596246 + MIR SINE MIR 119 169 -93 4952 191 34 60 chr1 71597731 71599094 -210594570 + L1MB7 LINE L1 4007 5405 -779 1684 151 48 0 chr1 71599094 71599365 -210594299 + AluJo SINE Alu 1 284 -28 4952 191 34 60 chr1 71599365 71599462 -210594202 + L1MB7 LINE L1 5405 5503 -681 2364 83 0 10 chr1 71599462 71599763 -210593901 + AluY SINE Alu 1 298 -13 4952 191 34 60 chr1 71599763 71600515 -210593149 + L1MB7 LINE L1 5503 6179 -5 448 248 193 69 chr1 71601161 71601379 -210592285 + MLT1K LTR MaLR 109 353 -235 1702 239 78 68 chr1 71601713 71601810 -210591854 + L1ME3A LINE L1 3988 4083 -2087 1845 174 10 6 chr1 71601810 71602121 -210591543 + AluJo SINE Alu 1 312 0 1702 239 78 68 chr1 71602121 71602817 -210590847 + L1ME3A LINE L1 4083 4771 -1399 1152 70 86 16 chr1 71602817 71603003 -210590661 + L1MA3 LINE L1 6106 6304 -1 1702 239 78 68 chr1 71603003 71603710 -210589954 + L1ME3A LINE L1 4771 5594 -576 8994 34 5 0 chr1 71603710 71605509 -210588155 + L1PA5 LINE L1 4353 6154 0 1702 239 78 68 chr1 71605509 71605861 -210587803 + L1ME3A LINE L1 5594 5941 -229 188 396 122 4 chr1 71606013 71606243 -210587421 - L2 LINE L2 -357 2957 2701 1800 141 29 0 chr1 71607624 71607901 -210585763 + AluJb SINE Alu 11 295 -17 1805 92 122 22 chr1 71607919 71608190 -210585474 + AluSx SINE Alu 1 298 -14 202 249 26 18 chr1 71608224 71608288 -210585376 + MIR SINE MIR 91 144 -64 283 121 136 30 chr1 71608383 71608449 -210585215 - MIR SINE MIR -53 209 137 882 234 22 22 chr1 71609071 71609293 -210584371 - MIR SINE MIR -18 244 23 559 307 31 75 chr1 71609429 71609813 -210583851 + L2 LINE L2 2134 2500 -814 2926 3 0 21 chr1 71610124 71610449 -210583215 - AluYb8 SINE Alu 0 318 1 743 281 40 13 chr1 71610574 71610802 -210582862 - MIR SINE MIR -27 235 2 1080 118 48 43 chr1 71610854 71611041 -210582623 - AluJo SINE Alu -124 188 1 24 0 0 0 chr1 71612149 71612173 -210581491 + GC_rich Low_complexity Low_complexity 1 24 0 231 88 0 0 chr1 71612233 71612267 -210581397 + (CGG)n Simple_repeat Simple_repeat 3 36 0 370 271 59 25 chr1 71612945 71613063 -210580601 - MIR SINE MIR -93 169 48 489 34 0 0 chr1 71613133 71613192 -210580472 + (TA)n Simple_repeat Simple_repeat 2 60 0 257 333 50 17 chr1 71613529 71613649 -210580015 - MIR SINE MIR -60 148 25 657 214 75 25 chr1 71613708 71613867 -210579797 - FRAM SINE Alu -6 170 4 207 326 63 63 chr1 71613966 71614061 -210579603 - L2 LINE L2 -54 3218 3124 623 259 107 24 chr1 71614095 71614300 -210579364 + MIR SINE MIR 41 262 0 369 0 0 0 chr1 71614808 71614849 -210578815 + (CA)n Simple_repeat Simple_repeat 2 42 0 367 241 218 8 chr1 71615044 71615177 -210578487 + MLT1K LTR MaLR 357 517 -71 311 321 202 0 chr1 71615261 71615370 -210578294 - L2 LINE L2 -1 3271 3141 2302 84 0 3 chr1 71616010 71616306 -210577358 - AluY SINE Alu -16 295 1 393 250 12 0 chr1 71616691 71616775 -210576889 + L2 LINE L2 3188 3272 0 2584 119 8 16 chr1 71616806 71617184 -210576480 - THE1C LTR MaLR 0 375 1 693 250 91 14 chr1 71617185 71617405 -210576259 - LTR16C LTR ERVL 0 491 255 3845 166 95 49 chr1 71617860 71618457 -210575207 - MER21B LTR ERV1 -53 810 169 2373 134 19 25 chr1 71618457 71618823 -210574841 - THE1B LTR MaLR 0 364 1 3845 166 95 49 chr1 71618823 71618997 -210574667 - MER21B LTR ERV1 -694 169 4 228 264 69 0 chr1 71618998 71619070 -210574594 + L1MC5 LINE L1 7071 7147 -814 927 206 69 5 chr1 71619103 71619292 -210574372 - MER3 DNA MER1_type -8 201 1 447 284 123 9 chr1 71619509 71619720 -210573944 + L1MC5 LINE L1 7260 7494 -467 3211 169 42 26 chr1 71619726 71620274 -210573390 + L1MB8 LINE L1 5108 5646 -532 459 0 0 0 chr1 71620274 71620325 -210573339 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 3211 169 42 26 chr1 71620325 71620443 -210573221 + L1MB8 LINE L1 5646 5761 -417 1656 132 165 18 chr1 71620443 71620770 -210572894 + THE1C LTR MaLR 1 375 0 3211 169 42 26 chr1 71620770 71620866 -210572798 + L1MB8 LINE L1 5761 5890 -288 456 207 133 15 chr1 71621678 71621813 -210571851 - MLT1E1 LTR MaLR -503 151 1 543 298 13 19 chr1 71621984 71622142 -210571522 + MIR3 SINE MIR 16 172 -36 191 347 99 25 chr1 71622191 71622312 -210571352 + L3b LINE CR1 1421 1550 -33 2319 84 10 0 chr1 71622322 71622621 -210571043 + AluSp SINE Alu 1 302 -11 1654 156 10 28 chr1 71622889 71623202 -210570462 - AluJo SINE Alu 0 308 1 44240 35 3 1 chr1 71623528 71629521 -210564143 - L1PA4 LINE L1 -3 6152 147 1070 180 12 0 chr1 71629555 71629722 -210563942 - FAM SINE Alu -6 169 1 2242 110 3 3 chr1 71629727 71630035 -210563629 - AluSg SINE Alu -2 308 1 438 36 0 0 chr1 71630315 71630371 -210563293 + (TTG)n Simple_repeat Simple_repeat 1 56 0 1797 169 0 0 chr1 71630373 71630652 -210563012 - AluJb SINE Alu -33 279 1 2215 61 11 21 chr1 71630673 71630953 -210562711 - AluY SINE Alu -34 277 1 2027 118 31 3 chr1 71630953 71631241 -210562423 - AluSx SINE Alu -16 296 1 589 319 47 79 chr1 71631245 71631914 -210561750 - L2 LINE L2 -15 3257 2606 406 224 61 0 chr1 71631940 71632038 -210561626 - MLT1J LTR MaLR -30 481 378 628 236 30 24 chr1 71632060 71632225 -210561439 - MLT1J LTR MaLR -345 166 1 401 283 147 59 chr1 71632256 71632516 -210561148 - L2 LINE L2 -744 2570 2334 2233 126 0 0 chr1 71632516 71632818 -210560846 + AluSx SINE Alu 1 302 -10 401 283 147 59 chr1 71632818 71633102 -210560562 - L2 LINE L2 -980 2334 1978 2194 117 3 0 chr1 71633115 71633422 -210560242 + AluSx SINE Alu 3 310 -2 241 289 173 0 chr1 71633535 71633639 -210560025 + MIR SINE MIR 138 259 -3 721 214 15 0 chr1 71633741 71633872 -210559792 - FLAM_A SINE Alu 0 133 1 454 284 7 39 chr1 71634245 71634400 -210559264 + MIR SINE MIR 81 230 -32 669 238 22 58 chr1 71634999 71635222 -210558442 + MIR SINE MIR 48 262 0 1311 98 0 0 chr1 71635330 71635503 -210558161 + AluSg/x SINE Alu 130 302 -8 218 149 0 85 chr1 71635512 71635559 -210558105 - MIR SINE MIR -81 127 85 1178 184 233 117 chr1 71635857 71636531 -210557133 + LTR41 LTR ERVL 16 767 -6 1917 161 0 0 chr1 71637195 71637494 -210556170 + AluJb SINE Alu 1 299 -13 972 291 123 55 chr1 71637879 71638243 -210555421 + MLT1K LTR MaLR 42 452 -136 1636 139 46 43 chr1 71638243 71638566 -210555098 + MER33 DNA MER1_type 1 324 0 972 291 123 55 chr1 71638566 71638713 -210554951 + MLT1K LTR MaLR 452 588 0 1910 97 112 0 chr1 71638721 71638999 -210554665 + AluSq SINE Alu 1 309 -4 2360 90 0 7 chr1 71639521 71639821 -210553843 - AluSx SINE Alu -14 298 1 331 321 184 5 chr1 71640130 71640320 -210553344 - MIR SINE MIR -26 236 13 352 231 144 0 chr1 71641168 71641272 -210552392 + L2 LINE L2 3195 3313 0 24 0 0 0 chr1 71641272 71641296 -210552368 + AT_rich Low_complexity Low_complexity 1 24 0 2330 86 0 46 chr1 71641336 71641663 -210552001 - AluSx SINE Alu 0 312 1 291 164 0 0 chr1 71641900 71641961 -210551703 + C-rich Low_complexity Low_complexity 5 65 0 1716 118 4 0 chr1 71642416 71642644 -210551020 + AluSx SINE Alu 1 229 -83 630 148 0 35 chr1 71642652 71642794 -210550870 + (GGAA)n Simple_repeat Simple_repeat 4 140 0 279 206 159 135 chr1 71642797 71642849 -210550815 - LTR67 LTR ERVL -31 526 477 2194 123 0 0 chr1 71642849 71643141 -210550523 - AluSx SINE Alu -20 292 1 279 206 159 135 chr1 71643141 71643258 -210550406 - LTR67 LTR ERVL -80 477 353 519 263 234 11 chr1 71643342 71643517 -210550147 - LTR67 LTR ERVL -335 222 9 2208 75 57 0 chr1 71643618 71643900 -210549764 - AluY SINE Alu -13 298 1 1780 132 17 21 chr1 71644060 71644349 -210549315 + AluJb SINE Alu 1 288 -24 2297 85 20 0 chr1 71644350 71644644 -210549020 - AluSg SINE Alu -10 300 1 304 182 61 0 chr1 71644666 71644732 -210548932 - L1MA10 LINE L1 -7 6327 6258 826 94 111 0 chr1 71645982 71646099 -210547565 + AluY SINE Alu 2 131 -180 1508 70 0 0 chr1 71646138 71646323 -210547341 + AluY SINE Alu 115 299 -12 608 268 14 7 chr1 71646370 71646512 -210547152 + MIR SINE MIR 11 153 -109 248 281 29 65 chr1 71646528 71646667 -210546997 - L2 LINE L2 -60 3253 3120 1015 187 19 38 chr1 71646692 71646901 -210546763 + MIR SINE MIR 36 240 -22 669 293 104 12 chr1 71646917 71647176 -210546488 - L2 LINE L2 -180 3133 2851 465 187 71 182 chr1 71647182 71647277 -210546387 - MLT1E3 LTR MaLR 0 624 520 1760 165 16 36 chr1 71647277 71647586 -210546078 + AluJb SINE Alu 5 307 -5 1780 164 19 19 chr1 71647592 71647902 -210545762 + AluJo SINE Alu 1 310 -2 465 187 71 182 chr1 71647902 71647997 -210545667 - MLT1E3 LTR MaLR -109 515 449 389 153 0 14 chr1 71648046 71648118 -210545546 + MLT1E LTR MaLR 523 593 0 1780 107 157 0 chr1 71648903 71649164 -210544500 - AluSq SINE Alu 0 303 2 283 339 59 0 chr1 71649828 71649946 -210543718 + MIR SINE MIR 53 177 -85 336 301 146 0 chr1 71650458 71650581 -210543083 - L2 LINE L2 0 3313 3173 180 111 0 0 chr1 71650620 71650647 -210543017 + (A)n Simple_repeat Simple_repeat 1 27 0 2539 74 0 0 chr1 71650666 71650975 -210542689 - AluSg SINE Alu -1 309 1 622 246 88 52 chr1 71650975 71651275 -210542389 - HAL1 LINE L1 -1013 1494 1175 2334 112 0 0 chr1 71651275 71651587 -210542077 - AluSx SINE Alu 0 312 1 622 246 88 52 chr1 71651587 71651672 -210541992 - HAL1 LINE L1 -1332 1175 1095 477 340 68 4 chr1 71651647 71651912 -210541752 - HAL1 LINE L1 -2210 297 16 * 1966 187 93 62 chr1 71652024 71652495 -210541169 - MER66B LTR ERV1 0 486 1 1184 155 58 47 chr1 71652556 71652814 -210540850 - MER63 DNA MER1_type -7 1055 795 35 0 0 0 chr1 71652817 71652852 -210540812 + AT_rich Low_complexity Low_complexity 1 35 0 2306 101 0 0 chr1 71652899 71653197 -210540467 - AluY SINE Alu -13 298 1 2367 231 88 53 chr1 71653669 71654630 -210539034 - HAL1b LINE L1 0 2507 430 2185 108 0 10 chr1 71655072 71655377 -210538287 - AluSq SINE Alu -11 302 1 1636 189 10 3 chr1 71655380 71655671 -210537993 - AluJo SINE Alu -17 295 3 2165 95 7 16 chr1 71655742 71656048 -210537616 - AluSx SINE Alu -9 303 1 809 154 0 15 chr1 71657063 71657193 -210536471 - AluSg/x SINE Alu -54 256 129 2175 125 0 7 chr1 71657319 71657623 -210536041 + AluSx SINE Alu 1 302 -10 1842 158 3 7 chr1 71657667 71657959 -210535705 - L1PA15 LINE L1 -3 6162 5872 2298 112 0 3 chr1 71658565 71658877 -210534787 + AluSp SINE Alu 1 311 -2 235 266 23 102 chr1 71659072 71659200 -210534464 - L1ME LINE L1 -382 5739 5622 439 191 36 0 chr1 71659200 71659284 -210534380 - MLT1K LTR MaLR 0 588 502 1006 251 215 11 chr1 71659421 71659779 -210533885 - L1MEc LINE L1 -5931 465 35 251 234 39 70 chr1 71659857 71659985 -210533679 - MLT1K LTR MaLR -87 501 378 2583 47 0 0 chr1 71660624 71660920 -210532744 - AluY SINE Alu -15 296 1 317 135 93 5 chr1 71660946 71661027 -210532637 + AluS SINE Alu 30 80 -222 213 39 0 0 chr1 71661133 71661159 -210532505 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 447 322 33 24 chr1 71661329 71661540 -210532124 + L2 LINE L2 2448 2660 -654 493 305 8 16 chr1 71661550 71661678 -210531986 + MLT1K LTR MaLR 23 149 -439 376 235 39 39 chr1 71661985 71662087 -210531577 + MLT1L LTR MaLR 508 609 -6 241 217 145 14 chr1 71662199 71662268 -210531396 + MIR SINE MIR 160 237 -25 2316 102 6 13 chr1 71662504 71662817 -210530847 - AluSq SINE Alu -2 311 1 207 347 50 114 chr1 71662856 71663118 -210530546 + L2 LINE L2 2989 3233 -39 887 282 40 0 chr1 71663337 71663610 -210530054 + L1PB1 LINE L1 6 289 -6574 15495 174 20 8 chr1 71663616 71667601 -210526063 + L1PB1 LINE L1 2478 6506 -361 275 126 0 68 chr1 71667606 71667709 -210525955 + (TA)n Simple_repeat Simple_repeat 2 97 0 2329 144 3 11 chr1 71667710 71668078 -210525586 + L1PB1 LINE L1 6499 6863 -4 28 0 0 0 chr1 71668078 71668106 -210525558 + AT_rich Low_complexity Low_complexity 1 28 0 953 188 0 0 chr1 71668106 71668290 -210525374 + AluJb SINE Alu 129 312 0 297 47 23 0 chr1 71668561 71668604 -210525060 - MADE1 DNA Mariner -36 44 1 479 217 9 9 chr1 71668735 71668841 -210524823 - MLT1K LTR MaLR -2 586 481 659 330 54 12 chr1 71668962 71669220 -210524444 + LTR16A LTR ERVL 20 288 -162 786 203 0 8 chr1 71669825 71669958 -210523706 + FLAM_A SINE Alu 1 132 -1 22 0 0 0 chr1 71670094 71670116 -210523548 + AT_rich Low_complexity Low_complexity 1 22 0 1815 134 18 4 chr1 71670182 71670482 -210523182 + AluSg SINE Alu 1 304 0 605 223 8 0 chr1 71671036 71671157 -210522507 - MIR SINE MIR -31 231 110 4173 213 27 21 chr1 71671157 71672160 -210521504 + L1M4 LINE L1 4023 5031 -1115 1190 176 3 97 chr1 71672163 71672404 -210521260 - Zaphod DNA AcHobo -119 3912 3711 1496 214 9 83 chr1 71672404 71672825 -210520839 - MLT1B LTR MaLR 0 390 1 1190 176 3 97 chr1 71672825 71672924 -210520740 - Zaphod DNA AcHobo -320 3711 3604 842 173 57 74 chr1 71672908 71673365 -210520299 - Zaphod DNA AcHobo -3022 1009 561 * 1349 211 62 79 chr1 71673375 71673414 -210520250 - MLT1E LTR MaLR -8 585 547 2090 113 10 7 chr1 71673414 71673707 -210519957 - AluSq SINE Alu -19 294 1 1349 211 62 79 chr1 71673707 71674084 -210519580 - MLT1E LTR MaLR -46 547 176 263 250 0 16 chr1 71674096 71674160 -210519504 - MLT1E LTR MaLR -591 63 1 2029 235 30 78 chr1 71674166 71674731 -210518933 - Zaphod DNA AcHobo -3478 553 16 428 302 72 24 chr1 71674914 71675205 -210518459 - L1ME4a LINE L1 -4 6117 5813 450 36 0 0 chr1 71675344 71675400 -210518264 + (TC)n Simple_repeat Simple_repeat 2 57 0 225 60 0 80 chr1 71675724 71675774 -210517890 - Alu SINE Alu -253 48 3 2134 109 3 16 chr1 71675859 71676170 -210517494 + AluSq SINE Alu 1 307 -6 1233 124 0 0 chr1 71676359 71676528 -210517136 + AluSq SINE Alu 1 169 -144 6181 146 175 90 chr1 71676528 71678092 -210515572 + pTR5 LTR ERV1 743 2438 0 30141 86 6 9 chr1 71678108 71682949 -210510715 + HERV17 LTR ERV1 40 4954 -3445 2025 104 10 29 chr1 71682942 71683802 -210509862 + HERV17 LTR ERV1 709 1740 -5156 * 5955 109 10 37 chr1 71683781 71685236 -210508428 + HERV17 LTR ERV1 504 8353 -46 4225 114 213 22 chr1 71685242 71685932 -210507732 + LTR12 LTR ERV1 5 826 0 934 133 0 0 chr1 71685933 71686076 -210507588 + AluSc SINE Alu 165 307 -2 2105 92 60 14 chr1 71686164 71686448 -210507216 + AluY SINE Alu 1 297 -14 189 0 0 0 chr1 71686482 71686503 -210507161 + (TG)n Simple_repeat Simple_repeat 2 22 0 508 289 8 78 chr1 71686654 71686896 -210506768 - L2 LINE L2 0 3313 3089 1851 156 31 0 chr1 71686917 71687205 -210506459 - AluJb SINE Alu -15 297 1 3396 207 31 4 chr1 71687223 71687908 -210505756 - Charlie1a DNA MER1_type -742 713 11 307 366 8 8 chr1 71687981 71688112 -210505552 - MIR SINE MIR -111 151 21 22 56 0 0 chr1 71688312 71688348 -210505316 + AT_rich Low_complexity Low_complexity 1 36 0 369 303 36 55 chr1 71688449 71688614 -210505050 + L1ME LINE L1 406 567 -5552 2013 99 8 0 chr1 71688622 71688885 -210504779 + AluSx SINE Alu 23 287 -25 438 20 0 0 chr1 71688891 71688942 -210504722 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2347 184 27 86 chr1 71689038 71689236 -210504428 + MER82 DNA MER2_type 127 335 -318 415 127 16 0 chr1 71689236 71689299 -210504365 - L1MA9 LINE L1 0 6312 6249 2347 184 27 86 chr1 71689299 71689660 -210504004 + MER82 DNA MER2_type 335 653 0 455 313 92 25 chr1 71689665 71690033 -210503631 + L1ME LINE L1 612 1004 -5115 371 306 70 35 chr1 71690108 71690477 -210503187 + L1ME LINE L1 5364 5745 -359 631 314 65 22 chr1 71690625 71691115 -210502549 - L1ME4a LINE L1 -216 5905 5395 2316 71 3 0 chr1 71691127 71691436 -210502228 - AluY SINE Alu 0 310 1 210 382 0 0 chr1 71691704 71691793 -210501871 - L2 LINE L2 -1520 1794 1706 2076 100 0 59 chr1 71691907 71692228 -210501436 - AluSx SINE Alu -10 302 1 25 65 0 0 chr1 71692239 71692285 -210501379 + AT_rich Low_complexity Low_complexity 1 46 0 7366 95 5 15 chr1 71692891 71693076 -210500588 - L1MA3 LINE L1 0 7724 7539 2038 121 39 0 chr1 71693076 71693358 -210500306 + AluSx SINE Alu 1 293 -19 7366 95 5 15 chr1 71693358 71694233 -210499431 - L1MA3 LINE L1 -185 7539 6675 14698 111 15 83 chr1 71694254 71694516 -210499148 - L1MA3 LINE L1 -4150 3415 3137 2126 66 10 75 chr1 71694516 71694821 -210498843 - AluY SINE Alu -26 285 1 14698 111 15 83 chr1 71694821 71694832 -210498832 - L1MA3 LINE L1 -4428 3137 3127 2346 70 3 0 chr1 71694832 71695118 -210498546 - AluSq SINE Alu -26 287 1 14698 111 15 83 chr1 71695118 71697403 -210496261 - L1MA3 LINE L1 -4438 3127 1029 3137 206 24 34 chr1 71697403 71698115 -210495549 - L1MB5 LINE L1 -16 6158 5454 2048 232 32 35 chr1 71698123 71698741 -210494923 + MER74B LTR ERVL 1 558 0 2039 161 64 13 chr1 71698741 71699051 -210494613 - L1M3 LINE L1 -729 5451 5095 1945 160 6 10 chr1 71699051 71699363 -210494301 - AluJo SINE Alu -1 311 1 2039 161 64 13 chr1 71699363 71699603 -210494061 - L1M3 LINE L1 -1085 5095 4869 1941 172 0 0 chr1 71699627 71699935 -210493729 - AluJo SINE Alu -4 308 1 1841 129 26 43 chr1 71699953 71699995 -210493669 - L1MB3 LINE L1 -10 6173 6132 1989 105 0 0 chr1 71699995 71700252 -210493412 - AluSg SINE Alu -15 295 39 1841 129 26 43 chr1 71700252 71700559 -210493105 - L1MB3 LINE L1 -51 6132 5830 364 370 27 33 chr1 71700752 71701052 -210492612 + L2 LINE L2 309 606 -2708 436 319 155 48 chr1 71701058 71701354 -210492310 + L2 LINE L2 2162 2425 -889 4087 154 37 3 chr1 71701354 71702036 -210491628 + MER39 LTR ERV1 1 705 -2 436 319 155 48 chr1 71702036 71702228 -210491436 + L2 LINE L2 2425 2595 -719 2472 80 0 3 chr1 71702228 71702539 -210491125 - AluSx SINE Alu 0 312 3 436 319 155 48 chr1 71702539 71702629 -210491035 + L2 LINE L2 2595 2886 -428 1821 130 0 8 chr1 71702994 71703255 -210490409 + AluJb SINE Alu 3 261 -51 811 56 0 19 chr1 71703443 71703551 -210490113 - AluY SINE Alu -5 306 201 195 204 0 0 chr1 71703903 71703947 -210489717 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 42 0 0 chr1 71703953 71703977 -210489687 + (TG)n Simple_repeat Simple_repeat 2 25 0 2241 107 0 10 chr1 71704159 71704458 -210489206 - AluSx SINE Alu -16 296 1 201 217 17 67 chr1 71704475 71704535 -210489129 - L2 LINE L2 -9 3263 3207 234 0 0 0 chr1 71706128 71706154 -210487510 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2206 90 0 3 chr1 71706158 71706447 -210487217 - AluSx SINE Alu -24 288 1 2216 102 3 6 chr1 71706503 71706816 -210486848 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 71706956 71706977 -210486687 + (T)n Simple_repeat Simple_repeat 1 21 0 205 273 0 0 chr1 71709361 71709416 -210484248 - MIR SINE MIR -111 151 97 467 227 58 112 chr1 71709492 71709770 -210483894 - L2 LINE L2 -3 3310 3048 374 273 157 23 chr1 71709914 71710086 -210483578 - L2 LINE L2 0 3313 3119 624 292 108 18 chr1 71710108 71710385 -210483279 - L2 LINE L2 -640 2674 2373 738 281 23 53 chr1 71710869 71711132 -210482532 + MIR SINE MIR 7 261 -1 2955 244 132 62 chr1 71711545 71711700 -210481964 - L1MC4 LINE L1 0 8042 7899 270 0 0 0 chr1 71711700 71711730 -210481934 + (CA)n Simple_repeat Simple_repeat 2 31 0 2955 244 132 62 chr1 71711730 71712801 -210480863 - L1MC4 LINE L1 -143 7899 6905 2420 55 0 13 chr1 71712801 71713108 -210480556 + AluY SINE Alu 1 303 -8 2955 244 132 62 chr1 71713108 71713189 -210480475 - L1MC4 LINE L1 -1137 6905 6831 2272 88 7 0 chr1 71713189 71713483 -210480181 - AluSp SINE Alu -17 296 1 2955 244 132 62 chr1 71713483 71713728 -210479936 - L1MC4 LINE L1 -1211 6831 6379 328 180 190 40 chr1 71713758 71713858 -210479806 - L1MC4a LINE L1 -1470 6338 6224 288 240 164 0 chr1 71714463 71714567 -210479097 + L2 LINE L2 3190 3310 -3 2094 177 29 3 chr1 71714676 71715021 -210478643 - MSTC LTR MaLR 0 428 75 287 373 40 0 chr1 71715041 71715191 -210478473 + L2 LINE L2 2321 2476 -838 2296 92 0 0 chr1 71715271 71715564 -210478100 - AluSg1 SINE Alu -16 293 1 370 321 108 33 chr1 71715637 71715849 -210477815 + L3 LINE CR1 1182 1409 -168 314 274 9 57 chr1 71715985 71716091 -210477573 + L3 LINE CR1 1428 1528 -49 1886 61 0 0 chr1 71716159 71716390 -210477274 - AluY SINE Alu -15 296 66 2402 67 7 7 chr1 71716502 71716799 -210476865 - AluSp SINE Alu -16 297 1 1737 151 54 10 chr1 71716944 71717242 -210476422 + AluJb SINE Alu 2 312 0 955 171 0 34 chr1 71719295 71719470 -210474194 + FRAM SINE Alu 1 168 -8 22 0 0 0 chr1 71719764 71719786 -210473878 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 71719821 71719841 -210473823 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr1 71719901 71719925 -210473739 + AT_rich Low_complexity Low_complexity 1 24 0 253 271 121 21 chr1 71720340 71720439 -210473225 - HAL1b LINE L1 -1 1347 1229 2202 118 3 0 chr1 71720439 71720743 -210472921 + AluSx SINE Alu 1 305 -7 253 271 121 21 chr1 71720743 71720783 -210472881 - HAL1b LINE L1 -119 1229 1194 453 298 122 63 chr1 71721131 71721437 -210472227 - L1M LINE L1 -817 5329 5043 2114 130 0 10 chr1 71721437 71721736 -210471928 - AluSx SINE Alu -16 296 1 453 298 122 63 chr1 71721736 71722148 -210471516 - L1M LINE L1 -1103 5043 4672 2252 111 0 0 chr1 71722259 71722556 -210471108 - AluSg SINE Alu -13 297 1 1331 191 88 7 chr1 71722557 71722830 -210470834 - AluJo SINE Alu -17 295 1 2375 93 6 8 chr1 71723238 71723591 -210470073 - L1MA2 LINE L1 0 6304 5953 239 231 222 0 chr1 71723904 71724021 -210469643 - L1ME4a LINE L1 -2 6119 5977 221 182 23 0 chr1 71724355 71724399 -210469265 - L2 LINE L2 -4 3309 3265 199 277 26 154 chr1 71724456 71724651 -210469013 - L2 LINE L2 -171 3101 2932 234 259 103 0 chr1 71724798 71724856 -210468808 - L2 LINE L2 -36 3277 3214 441 305 0 0 chr1 71724866 71724971 -210468693 + L2 LINE L2 2198 2302 -1012 417 250 11 0 chr1 71724991 71725079 -210468585 + L2 LINE L2 3191 3279 -34 857 136 0 111 chr1 71725105 71725291 -210468373 + AluSg/x SINE Alu 137 301 -11 2509 58 3 0 chr1 71725291 71725599 -210468065 + AluY SINE Alu 1 309 -2 857 136 0 111 chr1 71725599 71725610 -210468054 + AluSg/x SINE Alu 301 312 0 768 320 101 59 chr1 71725619 71725912 -210467752 + L2 LINE L2 2305 2584 -730 1444 123 21 17 chr1 71725912 71726147 -210467517 + MER46A DNA MER2_type 1 236 0 768 320 101 59 chr1 71726147 71726459 -210467205 + L2 LINE L2 2584 2935 -379 2290 98 0 16 chr1 71727696 71728003 -210465661 - AluSg SINE Alu -8 302 1 26 0 0 0 chr1 71728507 71728533 -210465131 + AT_rich Low_complexity Low_complexity 1 26 0 586 306 61 10 chr1 71729313 71729509 -210464155 - MIR SINE MIR -23 239 34 487 264 9 0 chr1 71729684 71729790 -210463874 - MIR SINE MIR 0 262 156 206 314 100 29 chr1 71729772 71729912 -210463752 - L2 LINE L2 -257 3015 2866 * 21 0 0 0 chr1 71730125 71730146 -210463518 + AT_rich Low_complexity Low_complexity 1 21 0 380 237 0 32 chr1 71730761 71730854 -210462810 + MER21B LTR ERV1 1 90 -773 270 243 43 14 chr1 71730875 71730945 -210462719 + MER21B LTR ERV1 18 89 -774 2296 210 113 52 chr1 71730967 71731676 -210461988 + MER21B LTR ERV1 52 803 -60 278 339 210 19 chr1 71731776 71732401 -210461263 - L2 LINE L2 -718 2596 1853 1781 137 0 40 chr1 71732548 71732847 -210460817 - AluJb SINE Alu -20 292 6 340 318 31 31 chr1 71732917 71733046 -210460618 + L1MC4 LINE L1 6577 6705 -1337 312 323 0 0 chr1 71732992 71733088 -210460576 - L1MC4 LINE L1 -1333 6709 6614 * 222 202 53 26 chr1 71733096 71733210 -210460454 + (TATAA)n Simple_repeat Simple_repeat 5 121 0 238 123 35 0 chr1 71733211 71733268 -210460396 + (TA)n Simple_repeat Simple_repeat 2 60 0 641 268 100 47 chr1 71733300 71733812 -210459852 + L1ME LINE L1 5257 5795 -367 377 280 96 16 chr1 71733812 71733937 -210459727 - L2 LINE L2 -18 3295 3161 568 267 67 45 chr1 71734071 71734446 -210459218 - L1MC4a LINE L1 -817 6991 6609 28 0 0 0 chr1 71735151 71735179 -210458485 + AT_rich Low_complexity Low_complexity 1 28 0 2148 206 61 46 chr1 71735342 71735404 -210458260 - L1MCa LINE L1 -3607 2819 2759 1216 148 30 0 chr1 71735404 71735607 -210458057 + MER6B DNA MER2_type 2 210 0 2148 206 61 46 chr1 71735607 71735744 -210457920 - L1MCa LINE L1 -3667 2759 2626 12307 78 8 1 chr1 71735744 71738219 -210455445 + L1PA7 LINE L1 3655 6153 -1 2148 206 61 46 chr1 71738219 71738394 -210455270 - L1MCa LINE L1 -3800 2626 2455 1893 152 0 7 chr1 71738394 71738683 -210454981 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr1 71738687 71738707 -210454957 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2148 206 61 46 chr1 71738707 71739196 -210454468 - L1MCa LINE L1 -3973 2453 1957 360 176 12 71 chr1 71739198 71739283 -210454381 - AluJb SINE Alu -56 246 167 2137 127 0 3 chr1 71739299 71739598 -210454066 - AluSx SINE Alu -14 298 1 386 194 0 16 chr1 71739600 71739662 -210454002 - AluJ/FLAM SINE Alu -240 62 2 685 277 29 27 chr1 71739662 71739884 -210453780 - L1MCa LINE L1 -4683 1924 1511 216 0 0 0 chr1 71740439 71740463 -210453201 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1884 169 0 3 chr1 71740969 71741259 -210452405 - AluJo SINE Alu -22 290 2 1083 185 49 16 chr1 71742268 71742511 -210451153 - L1MB8 LINE L1 0 6178 5928 561 295 100 11 chr1 71743853 71744043 -210449621 - MER58C DNA MER1_type 0 215 9 1776 159 84 0 chr1 71745298 71745631 -210448033 - MER46B DNA MER2_type 0 236 1 257 350 121 62 chr1 71746372 71746486 -210447178 + L2 LINE L2 2150 2256 -1016 1919 149 3 3 chr1 71746486 71746774 -210446890 + AluJb SINE Alu 1 288 -24 257 350 121 62 chr1 71746774 71747547 -210446117 + L2 LINE L2 2256 3088 -184 203 290 140 21 chr1 71747801 71747894 -210445770 + L2 LINE L2 3168 3271 -1 1759 255 74 140 chr1 71748173 71748270 -210445394 + L2 LINE L2 1789 1891 -1422 1836 174 0 3 chr1 71748270 71748569 -210445095 - AluJo SINE Alu 0 312 15 2193 120 0 0 chr1 71748570 71748869 -210444795 + AluSg SINE Alu 1 299 -11 1759 255 74 140 chr1 71748869 71749528 -210444136 + L2 LINE L2 1891 2592 -721 2252 102 0 3 chr1 71749528 71749823 -210443841 - AluSx SINE Alu -18 294 1 1759 255 74 140 chr1 71749823 71749854 -210443810 + L2 LINE L2 2592 2623 -690 2363 74 0 3 chr1 71749854 71750150 -210443514 - AluY SINE Alu -16 295 1 1759 255 74 140 chr1 71750150 71750207 -210443457 + L2 LINE L2 2623 2682 -631 2095 91 0 0 chr1 71750207 71750494 -210443170 - L1PA5 LINE L1 0 6154 5868 1759 255 74 140 chr1 71750494 71750586 -210443078 + L2 LINE L2 2682 2778 -535 547 79 0 0 chr1 71750586 71750662 -210443002 - MER41A LTR ERV1 -81 473 398 1759 255 74 140 chr1 71750662 71751259 -210442405 + L2 LINE L2 2778 3313 0 6468 76 2 0 chr1 71751269 71752515 -210441149 - L1PA14 LINE L1 0 6161 4904 23 0 0 0 chr1 71754307 71754330 -210439334 + AT_rich Low_complexity Low_complexity 1 23 0 206 262 0 0 chr1 71754439 71754481 -210439183 + L2 LINE L2 3262 3303 -10 254 309 119 0 chr1 71754570 71754654 -210439010 - MIR SINE MIR -87 121 28 1193 202 28 122 chr1 71755910 71756345 -210437319 - MSTD LTR MaLR 0 396 3 447 280 96 47 chr1 71756352 71756695 -210436969 + L1ME4a LINE L1 5710 6069 -52 237 328 0 67 chr1 71759796 71759915 -210433749 - L2 LINE L2 -683 2631 2521 190 204 0 0 chr1 71760653 71760697 -210432967 - MIR SINE MIR -14 248 205 678 240 6 50 chr1 71761395 71761574 -210432090 - AluJ SINE Alu -10 302 132 226 227 0 0 chr1 71761729 71761773 -210431891 + L2 LINE L2 3254 3297 -16 22 0 0 0 chr1 71761929 71761951 -210431713 + AT_rich Low_complexity Low_complexity 1 22 0 2303 90 0 7 chr1 71762110 71762411 -210431253 + AluSq SINE Alu 1 299 -14 461 248 28 0 chr1 71762585 71762694 -210430970 - AluJ SINE Alu -187 125 14 180 0 0 0 chr1 71763497 71763517 -210430147 + (TCCCC)n Simple_repeat Simple_repeat 2 21 0 757 218 0 7 chr1 71763524 71763671 -210429993 - FRAM SINE Alu -30 146 1 21 36 0 0 chr1 71764703 71764731 -210428933 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 71764904 71764925 -210428739 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 71764975 71765000 -210428664 + AT_rich Low_complexity Low_complexity 1 25 0 1827 89 4 0 chr1 71765653 71765888 -210427776 - AluSp SINE Alu -13 300 65 22 35 0 0 chr1 71766863 71766892 -210426772 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 71767008 71767031 -210426633 + AT_rich Low_complexity Low_complexity 1 23 0 189 432 32 0 chr1 71767293 71767478 -210426186 - L2 LINE L2 -216 3056 2866 264 322 44 11 chr1 71767512 71767602 -210426062 + MER5A DNA MER1_type 96 188 -1 24 53 0 0 chr1 71768146 71768184 -210425480 + AT_rich Low_complexity Low_complexity 1 38 0 962 263 113 43 chr1 71768228 71769028 -210424636 - L1ME3A LINE L1 -311 6139 5288 1943 120 0 0 chr1 71769040 71769316 -210424348 - AluSx SINE Alu 0 312 37 2399 259 123 18 chr1 71769460 71770241 -210423423 + L2 LINE L2 1852 2714 -600 2172 123 0 0 chr1 71770246 71770548 -210423116 + AluSx SINE Alu 1 302 -10 240 258 91 15 chr1 71770605 71770671 -210422993 + L2 LINE L2 3236 3306 -7 277 309 15 0 chr1 71770678 71770746 -210422918 - L2 LINE L2 -57 3215 3147 546 256 72 32 chr1 71771364 71771641 -210422023 - L1ME3A LINE L1 -3509 2917 2630 378 271 30 6 chr1 71771718 71771884 -210421780 - L1ME3A LINE L1 -4598 2009 1840 1788 208 58 78 chr1 71771929 71772510 -210421154 - L1MC4 LINE L1 -128 7914 7345 492 215 12 9 chr1 71772653 71772774 -210420890 - L1MCa LINE L1 -4756 1851 1542 2061 130 3 0 chr1 71772863 71773162 -210420502 - AluSx SINE Alu -12 300 1 24 0 0 0 chr1 71773304 71773328 -210420336 + AT_rich Low_complexity Low_complexity 1 24 0 1600 256 127 22 chr1 71773483 71774168 -210419496 + L2 LINE L2 2405 3156 -157 504 117 0 0 chr1 71774181 71774258 -210419406 + (TA)n Simple_repeat Simple_repeat 1 77 0 554 239 19 45 chr1 71774372 71774527 -210419137 + L2 LINE L2 3163 3313 0 425 291 6 39 chr1 71774721 71774903 -210418761 - HAL1 LINE L1 0 2507 2332 1422 150 4 0 chr1 71774906 71775139 -210418525 - MER6 DNA MER2_type 0 865 632 326 233 35 12 chr1 71775178 71775264 -210418400 + HAL1 LINE L1 2002 2089 -418 2771 197 86 12 chr1 71775277 71775520 -210418144 - MER6 DNA MER2_type -243 622 398 267 31 0 0 chr1 71775520 71775552 -210418112 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 2771 197 86 12 chr1 71775552 71775887 -210417777 - MER6 DNA MER2_type -467 398 1 1492 280 120 27 chr1 71775887 71776704 -210416960 - HAL1 LINE L1 -177 2330 1438 490 293 128 11 chr1 71776704 71776892 -210416772 + MIR SINE MIR 53 262 0 1933 147 3 0 chr1 71776902 71777194 -210416470 - AluJo SINE Alu -19 293 1 998 256 121 83 chr1 71777205 71777715 -210415949 - HAL1 LINE L1 -1078 1429 939 2455 74 3 0 chr1 71777715 71778025 -210415639 - AluY SINE Alu 0 311 1 998 256 121 83 chr1 71778025 71778532 -210415132 - HAL1 LINE L1 -1568 939 374 594 253 74 21 chr1 71779593 71779783 -210413881 - MIR SINE MIR -62 200 1 307 382 91 14 chr1 71779783 71779996 -210413668 - L3 LINE CR1 -56 1521 1292 981 268 36 0 chr1 71780365 71780589 -210413075 - MIR SINE MIR -28 234 3 454 285 152 21 chr1 71780809 71781033 -210412631 + L2 LINE L2 2768 3052 -261 3643 110 2 19 chr1 71781033 71781569 -210412095 + MER1A DNA MER1_type 1 527 0 454 285 152 21 chr1 71781569 71781679 -210411985 + L2 LINE L2 3052 3146 -167 325 246 14 0 chr1 71781687 71781756 -210411908 + MLT1L LTR MaLR 6 75 -540 483 314 0 8 chr1 71782254 71782378 -210411286 + MIR SINE MIR 30 152 -110 216 344 130 25 chr1 71782421 71782782 -210410882 - L2 LINE L2 -1121 2193 1795 7270 126 43 13 chr1 71782865 71783005 -210410659 - Tigger3b DNA MER2_type -1797 1231 1097 1220 135 8 79 chr1 71783005 71783257 -210410407 + MER46A DNA MER2_type 3 236 0 7270 126 43 13 chr1 71783257 71783622 -210410042 - Tigger3b DNA MER2_type -1931 1097 744 1572 80 5 0 chr1 71783622 71783822 -210409842 - AluSg/x SINE Alu -15 294 94 7270 126 43 13 chr1 71783822 71784510 -210409154 - Tigger3b DNA MER2_type -2284 744 1 21 0 0 0 chr1 71785112 71785133 -210408531 + AT_rich Low_complexity Low_complexity 1 21 0 1872 151 3 23 chr1 71785186 71785485 -210408179 + AluJb SINE Alu 1 293 -19 471 60 0 0 chr1 71785499 71785566 -210408098 + (CA)n Simple_repeat Simple_repeat 2 68 0 21 82 0 0 chr1 71785627 71785676 -210407988 + AT_rich Low_complexity Low_complexity 1 49 0 534 75 0 38 chr1 71785912 71785992 -210407672 - L1MC/D LINE L1 -623 5721 5645 22 0 0 0 chr1 71786634 71786656 -210407008 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 71787682 71787705 -210405959 + AT_rich Low_complexity Low_complexity 1 23 0 268 86 0 0 chr1 71787820 71787855 -210405809 - U2 snRNA snRNA -153 35 1 271 264 56 14 chr1 71787879 71787951 -210405713 - MIR SINE MIR -97 111 37 1323 70 0 0 chr1 71791298 71791470 -210402194 - L1PA5 LINE L1 -2 6152 5981 23 0 0 0 chr1 71791992 71792015 -210401649 + AT_rich Low_complexity Low_complexity 1 23 0 53 57 0 0 chr1 71792438 71792526 -210401138 + AT_rich Low_complexity Low_complexity 1 88 0 250 306 56 14 chr1 71792795 71792867 -210400797 - MER91C DNA MER1_type -35 105 31 23 54 0 0 chr1 71793066 71793103 -210400561 + AT_rich Low_complexity Low_complexity 1 37 0 979 277 120 43 chr1 71793431 71793990 -210399674 - Tigger8 DNA MER2_type -13 653 52 243 113 65 32 chr1 71794010 71794072 -210399592 - L1M3 LINE L1 -689 5491 5428 4177 189 28 42 chr1 71794073 71795072 -210398592 - L1MB7 LINE L1 0 6184 5172 2025 140 3 3 chr1 71795072 71795379 -210398285 - AluSx SINE Alu -5 307 1 4177 189 28 42 chr1 71795379 71795574 -210398090 - L1MB7 LINE L1 -1012 5172 4976 2253 81 7 29 chr1 71795574 71795882 -210397782 - AluSg SINE Alu -9 301 1 4177 189 28 42 chr1 71795882 71796229 -210397435 - L1MB7 LINE L1 -1208 4976 4669 2213 129 0 0 chr1 71796258 71796568 -210397096 - AluSx SINE Alu -2 310 1 24 67 0 0 chr1 71796573 71796618 -210397046 + AT_rich Low_complexity Low_complexity 1 45 0 697 210 117 65 chr1 71796912 71797126 -210396538 + MIR SINE MIR 30 254 -8 231 310 11 35 chr1 71797432 71797519 -210396145 - L2 LINE L2 -183 3089 3005 1395 202 74 52 chr1 71798047 71798384 -210395280 + Charlie4a DNA MER1_type 3 354 -1607 2710 29 0 0 chr1 71798384 71798691 -210394973 + AluY SINE Alu 1 307 -4 1395 202 74 52 chr1 71798691 71798814 -210394850 + Charlie4a DNA MER1_type 354 473 -35 514 288 75 6 chr1 71799165 71799325 -210394339 - MIR SINE MIR -71 191 21 993 184 0 0 chr1 71801599 71801746 -210391918 + FRAM SINE Alu 1 146 -30 377 58 0 0 chr1 71802117 71802169 -210391495 + MADE1 DNA Mariner 29 80 0 381 284 193 6 chr1 71803104 71803280 -210390384 - MIR SINE MIR -42 220 12 441 252 118 0 chr1 71803842 71803969 -210389695 - MIR3 SINE MIR -18 190 49 636 285 135 34 chr1 71804427 71804882 -210388782 - MLT1H LTR MaLR -4 545 3 31 0 0 0 chr1 71806055 71806086 -210387578 + AT_rich Low_complexity Low_complexity 1 31 0 650 258 37 6 chr1 71810513 71810676 -210382988 + MIR SINE MIR 31 198 -64 2123 218 90 19 chr1 71810704 71811268 -210382396 + L2 LINE L2 1906 2509 -805 910 212 25 37 chr1 71811292 71811533 -210382131 + L2 LINE L2 3075 3312 -1 225 300 33 0 chr1 71811521 71811581 -210382083 + MIR SINE MIR 189 250 -12 * 185 318 48 0 chr1 71811739 71811802 -210381862 + L2 LINE L2 3206 3271 -1 1492 140 64 19 chr1 71811956 71812220 -210381444 + AluJb SINE Alu 34 309 -3 434 301 63 113 chr1 71812341 71812477 -210381187 - L2 LINE L2 -8 3264 3123 937 218 0 0 chr1 71812477 71812651 -210381013 - FAM SINE Alu 0 175 2 434 301 63 113 chr1 71812651 71812970 -210380694 - L2 LINE L2 -149 3123 2854 216 0 0 0 chr1 71812970 71812994 -210380670 + (TG)n Simple_repeat Simple_repeat 2 25 0 434 301 63 113 chr1 71812994 71813254 -210380410 - L2 LINE L2 -418 2854 2582 * 809 304 195 29 chr1 71813250 71813871 -210379793 - L3 LINE CR1 -160 1417 694 1680 124 117 11 chr1 71813916 71814189 -210379475 - AluSx SINE Alu -10 302 1 1813 167 0 26 chr1 71814200 71814506 -210379158 - AluJb SINE Alu -14 298 1 1926 103 0 81 chr1 71814511 71814831 -210378833 - AluSc SINE Alu -15 294 1 333 118 0 0 chr1 71815218 71815269 -210378395 + (TG)n Simple_repeat Simple_repeat 2 52 0 453 229 29 9 chr1 71816150 71816255 -210377409 - MIR3 SINE MIR -7 201 95 240 237 217 38 chr1 71817547 71817688 -210375976 - MIR3 SINE MIR -7 201 36 441 317 122 31 chr1 71818630 71818864 -210374800 - MIR SINE MIR -6 256 4 527 297 91 48 chr1 71819009 71819218 -210374446 - MIR SINE MIR -14 248 31 621 255 27 100 chr1 71819256 71819306 -210374358 - MIR SINE MIR -19 243 191 2402 88 3 0 chr1 71819306 71819603 -210374061 - AluSp SINE Alu -15 298 1 621 255 27 100 chr1 71819603 71819811 -210373853 - MIR SINE MIR -71 191 4 310 279 28 169 chr1 71820045 71820335 -210373329 - L2 LINE L2 -2 3270 3022 1579 172 44 27 chr1 71820345 71820641 -210373023 - AluJo SINE Alu -10 302 2 216 0 0 0 chr1 71820727 71820751 -210372913 + (CA)n Simple_repeat Simple_repeat 2 25 0 570 194 42 7 chr1 71821045 71821189 -210372475 - L1ME1 LINE L1 -5 6161 6013 518 256 167 0 chr1 71821284 71821464 -210372200 - MIR SINE MIR -6 256 47 1151 212 84 41 chr1 71821524 71821844 -210371820 + L1ME1 LINE L1 5825 6161 -5 784 218 232 0 chr1 71823294 71823505 -210370159 + MIR SINE MIR 3 262 0 355 241 48 42 chr1 71824411 71824558 -210369106 + MIR SINE MIR 37 182 -58 203 338 83 76 chr1 71824766 71824911 -210368753 - L3b LINE CR1 -29 1554 1409 567 227 37 18 chr1 71825089 71825252 -210368412 + MER117 DNA MER1_type 1 166 -31 194 246 116 14 chr1 71825489 71825558 -210368106 - L2 LINE L2 -5 3308 3233 392 314 27 10 chr1 71825729 71825899 -210367765 + MIR SINE MIR 16 185 -62 572 287 65 14 chr1 71826134 71826350 -210367314 + MIR SINE MIR 36 262 0 469 253 80 43 chr1 71826523 71826685 -210366979 - MIR SINE MIR -70 192 25 202 250 0 0 chr1 71828227 71828271 -210365393 + (TA)n Simple_repeat Simple_repeat 2 45 0 246 125 0 0 chr1 71829093 71829141 -210364523 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr1 71830882 71830910 -210362754 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 71831410 71831445 -210362219 + AT_rich Low_complexity Low_complexity 1 35 0 292 252 27 45 chr1 71831662 71831773 -210361891 - MIR SINE MIR 0 262 154 239 167 8 16 chr1 71831987 71832051 -210361613 - L1MC2 LINE L1 -1 6332 6272 444 207 138 26 chr1 71832332 71832448 -210361216 + MIR SINE MIR 28 156 -106 424 313 93 11 chr1 71832662 71832844 -210360820 + MIR SINE MIR 47 243 -19 221 261 0 126 chr1 71833252 71833363 -210360301 + L2 LINE L2 2945 3041 -231 1203 204 22 67 chr1 71833783 71834178 -210359486 + L1MC5 LINE L1 6624 7105 -937 908 213 52 31 chr1 71834246 71834537 -210359127 + L1MC5 LINE L1 6974 7270 -691 189 107 0 0 chr1 71834545 71834573 -210359091 + (A)n Simple_repeat Simple_repeat 1 28 0 1060 281 110 24 chr1 71834740 71835372 -210358292 + L2 LINE L2 2635 3313 0 226 248 30 89 chr1 71835439 71835456 -210358208 + L2 LINE L2 3208 3224 -89 3350 112 8 95 chr1 71835456 71836098 -210357566 - L1PA14 LINE L1 0 6161 5576 226 248 30 89 chr1 71836098 71836181 -210357483 + L2 LINE L2 3224 3302 -11 209 250 0 0 chr1 71836998 71837042 -210356622 + L2 LINE L2 3266 3309 -4 1797 136 58 3 chr1 71837458 71837753 -210355911 + AluJb SINE Alu 1 311 -1 250 296 64 24 chr1 71837923 71838048 -210355616 - L2 LINE L2 -5 3308 3179 339 278 125 57 chr1 71838112 71838288 -210355376 + MER5A DNA MER1_type 2 189 0 764 185 31 49 chr1 71838419 71838581 -210355083 - MIR SINE MIR -102 160 2 240 306 81 16 chr1 71838835 71838959 -210354705 - MIR SINE MIR -71 191 60 522 245 51 119 chr1 71838990 71839188 -210354476 - MLT1L LTR MaLR -12 603 430 1567 157 132 58 chr1 71839188 71839620 -210354044 + MLT1C LTR MaLR 3 466 -1 522 245 51 119 chr1 71839620 71839715 -210353949 - MLT1L LTR MaLR -185 430 330 268 268 72 10 chr1 71839865 71839962 -210353702 + MLT1B LTR MaLR 7 109 -265 217 0 61 0 chr1 71840050 71840083 -210353581 + (TC)n Simple_repeat Simple_repeat 2 36 0 860 188 70 5 chr1 71840095 71840281 -210353383 + MLT1B LTR MaLR 193 390 0 317 229 30 99 chr1 71840295 71840426 -210353238 - MLT1L LTR MaLR -493 122 1 2047 154 3 3 chr1 71840477 71840788 -210352876 - AluSx SINE Alu -1 311 1 1698 158 73 0 chr1 71844863 71845136 -210348528 + AluJo SINE Alu 1 293 -19 206 271 17 17 chr1 71845266 71845325 -210348339 - L2 LINE L2 -5 3267 3209 232 351 27 0 chr1 71845397 71845471 -210348193 + L2 LINE L2 3215 3290 -23 2979 154 49 32 chr1 71845481 71845565 -210348099 - L1MC3 LINE L1 -8 7777 7696 1947 174 3 0 chr1 71845565 71845864 -210347800 - AluJb SINE Alu -12 300 1 2979 154 49 32 chr1 71845864 71846409 -210347255 - L1MC3 LINE L1 -89 7696 7137 198 0 0 0 chr1 71846836 71846858 -210346806 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2147 106 0 3 chr1 71846861 71847143 -210346521 - AluSx SINE Alu -31 281 1 5714 94 5 3 chr1 71847143 71847998 -210345666 - L1PA13 LINE L1 -9 6154 5299 314 323 130 12 chr1 71848116 71848277 -210345387 + MIR SINE MIR 49 228 -34 216 320 80 0 chr1 71848472 71848547 -210345117 + L2 LINE L2 3231 3311 -2 189 324 24 71 chr1 71848686 71848856 -210344808 - MIR SINE MIR -81 181 20 542 54 14 0 chr1 71849678 71849752 -210343912 + (TTCC)n Simple_repeat Simple_repeat 1 75 0 394 236 101 34 chr1 71850180 71850328 -210343336 + MLT1L LTR MaLR 233 390 -225 429 292 79 36 chr1 71850437 71850742 -210342922 + L1ME4a LINE L1 5804 6121 0 259 213 16 16 chr1 71850993 71851054 -210342610 + L3 LINE CR1 1230 1290 -287 478 293 128 44 chr1 71851068 71851681 -210341983 - L2 LINE L2 -18 3295 2630 370 281 31 0 chr1 71851679 71851775 -210341889 + L3 LINE CR1 1296 1394 -183 * 636 258 39 22 chr1 71851851 71852033 -210341631 - MIR SINE MIR -71 191 7 2255 115 0 3 chr1 71852617 71852930 -210340734 + AluSx SINE Alu 1 312 0 2420 77 3 0 chr1 71853835 71854132 -210339532 + AluSp SINE Alu 1 298 -15 200 286 0 0 chr1 71854552 71854601 -210339063 + CT-rich Low_complexity Low_complexity 4 52 0 776 305 77 47 chr1 71855649 71856245 -210337419 + L1MC4a LINE L1 5265 5878 -1930 185 200 73 18 chr1 71856245 71856300 -210337364 + MIR SINE MIR 100 157 -105 26 64 0 0 chr1 71856300 71856347 -210337317 + AT_rich Low_complexity Low_complexity 1 47 0 1492 188 26 46 chr1 71856368 71856524 -210337140 - AluJo SINE Alu -15 297 148 2273 131 41 16 chr1 71856524 71856890 -210336774 + THE1C LTR MaLR 1 375 0 1492 188 26 46 chr1 71856890 71857036 -210336628 - AluJo SINE Alu -164 148 1 256 204 80 68 chr1 71857039 71857127 -210336537 + MIR SINE MIR 168 256 -6 270 294 276 14 chr1 71857420 71857641 -210336023 - L2 LINE L2 -2 3270 2992 883 194 55 23 chr1 71857667 71857884 -210335780 + L1ME2 LINE L1 5940 6163 -1 1378 135 65 12 chr1 71858605 71858850 -210334814 - L1MC2 LINE L1 -25 6319 6062 302 217 43 65 chr1 71858852 71858944 -210334720 - L1MC2 LINE L1 -327 6017 5928 464 301 80 36 chr1 71859273 71859522 -210334142 - MIR SINE MIR 0 262 3 241 224 149 0 chr1 71859540 71859607 -210334057 + MIR SINE MIR 47 123 -139 266 246 46 0 chr1 71860211 71860276 -210333388 + L2 LINE L2 3204 3271 -1 417 283 158 38 chr1 71860790 71860974 -210332690 - MIR SINE MIR -10 252 47 246 229 0 33 chr1 71861117 71861178 -210332486 + MIR SINE MIR 202 260 -2 1121 250 55 6 chr1 71861297 71861641 -210332023 - L2 LINE L2 -516 2798 2438 201 303 133 42 chr1 71863615 71863780 -210329884 + MIR SINE MIR 43 222 -40 1924 146 0 71 chr1 71864663 71865032 -210328632 - AluJo SINE Alu 0 345 1 1879 119 0 4 chr1 71866479 71866740 -210326924 - AluSx SINE Alu -8 304 45 185 275 18 83 chr1 71866975 71867084 -210326580 - MIR SINE MIR -82 180 79 572 235 133 12 chr1 71868008 71868174 -210325490 - MIR3 SINE MIR -6 202 17 2091 126 3 10 chr1 71868736 71869030 -210324634 + AluSq SINE Alu 1 292 -21 329 319 9 18 chr1 71869483 71869596 -210324068 - MIR SINE MIR -78 130 19 189 263 123 18 chr1 71869783 71869840 -210323824 - L2 LINE L2 -1 3271 3209 2189 133 0 9 chr1 71870411 71870726 -210322938 - AluSx SINE Alu 0 312 1 341 267 93 12 chr1 71870726 71870848 -210322816 - MLT1I LTR MaLR -236 173 59 180 0 0 0 chr1 71870965 71870985 -210322679 + (A)n Simple_repeat Simple_repeat 1 20 0 342 254 0 0 chr1 71871160 71871227 -210322437 + L2 LINE L2 3206 3272 0 2295 98 0 22 chr1 71871460 71871776 -210321888 - AluSq SINE Alu 0 313 5 216 0 0 0 chr1 71872076 71872100 -210321564 + (T)n Simple_repeat Simple_repeat 1 24 0 242 267 107 0 chr1 71872146 71872221 -210321443 + MIR SINE MIR 34 116 -92 2378 94 13 0 chr1 71872235 71872544 -210321120 + AluSp SINE Alu 1 313 0 891 281 107 45 chr1 71872764 71873184 -210320480 - MLT1J1 LTR MaLR 0 446 1 327 333 39 0 chr1 71873184 71873286 -210320378 - L2 LINE L2 -27 3245 3140 246 250 90 60 chr1 71873431 71873531 -210320133 - L2 LINE L2 -9 3304 3202 403 284 14 43 chr1 71873615 71873756 -210319908 + MIR SINE MIR 16 152 -110 341 324 0 10 chr1 71873762 71873864 -210319800 + MIR SINE MIR 24 124 -138 557 324 14 5 chr1 71873928 71874135 -210319529 + MIR SINE MIR 46 254 -8 565 279 11 22 chr1 71877125 71877308 -210316356 + MIR SINE MIR 80 260 -2 283 237 63 109 chr1 71877374 71877576 -210316088 - MIR SINE MIR -24 238 37 932 298 102 39 chr1 71879020 71879483 -210314181 - MLT1J LTR MaLR -3 508 17 244 377 65 7 chr1 71879611 71879749 -210313915 + L2 LINE L2 3126 3271 -1 2376 110 0 0 chr1 71880645 71880955 -210312709 - AluSx SINE Alu -2 310 1 22 0 0 0 chr1 71881183 71881205 -210312459 + AT_rich Low_complexity Low_complexity 1 22 0 264 210 48 0 chr1 71881315 71881377 -210312287 + CT-rich Low_complexity Low_complexity 4 68 0 191 326 11 45 chr1 71881398 71881487 -210312177 - L2 LINE L2 -1 3271 3186 372 275 110 40 chr1 71882375 71882575 -210311089 - MIR SINE MIR -28 234 21 556 279 42 50 chr1 71882661 71882998 -210310666 - L1MC4 LINE L1 0 8042 7709 222 232 0 36 chr1 71883169 71883225 -210310439 + CT-rich Low_complexity Low_complexity 3 56 0 2169 106 0 0 chr1 71883338 71883620 -210310044 + AluSx SINE Alu 1 282 -30 323 244 109 32 chr1 71883644 71883800 -210309864 - L1ME4a LINE L1 -11 6110 5943 390 278 26 52 chr1 71883873 71883943 -210309721 + MIR SINE MIR 23 90 -172 426 261 92 0 chr1 71883943 71884062 -210309602 + MER94 DNA DNA 3 132 -2 390 278 26 52 chr1 71884062 71884106 -210309558 + MIR SINE MIR 90 134 -128 1944 124 0 0 chr1 71884532 71884797 -210308867 + AluSq SINE Alu 1 265 -48 270 307 61 0 chr1 71885189 71885303 -210308361 + L2 LINE L2 3193 3313 0 251 400 29 7 chr1 71886556 71886696 -210306968 - L2 LINE L2 -184 3088 2946 27 49 0 0 chr1 71887181 71887222 -210306442 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr1 71887258 71887284 -210306380 + (TG)n Simple_repeat Simple_repeat 1 26 0 601 224 29 0 chr1 71887894 71888037 -210305627 + MIR SINE MIR 42 188 -61 331 290 71 27 chr1 71888864 71889047 -210304617 + Charlie8 DNA MER1_type 92 282 -2135 362 277 25 17 chr1 71889866 71889985 -210303679 + MER5A DNA MER1_type 64 183 -6 1304 190 98 46 chr1 71890422 71890608 -210303056 - MER2 DNA MER2_type 0 344 132 2410 81 3 0 chr1 71890608 71890905 -210302759 - AluSp SINE Alu -15 298 1 1304 190 98 46 chr1 71890905 71891045 -210302619 - MER2 DNA MER2_type -212 132 1 291 283 0 0 chr1 71892387 71892447 -210301217 + L2 LINE L2 3202 3261 -11 5390 111 6 11 chr1 71892447 71893247 -210300417 + L1PA16 LINE L1 5367 6162 -4 466 192 17 75 chr1 71893679 71893720 -210299944 - MER94 DNA DNA -20 114 72 2087 124 0 3 chr1 71893720 71894046 -210299618 - AluSg SINE Alu 0 325 1 466 192 17 75 chr1 71894046 71894123 -210299541 - MER94 DNA DNA -62 72 2 1700 173 50 12 chr1 71894151 71894474 -210299190 + MER2 DNA MER2_type 1 335 -10 238 291 0 0 chr1 71894511 71894566 -210299098 - L2 LINE L2 -543 2771 2717 2121 126 0 0 chr1 71895217 71895511 -210298153 + AluSc SINE Alu 1 294 -15 1757 124 0 0 chr1 71895722 71895956 -210297708 + AluSx SINE Alu 55 288 -24 810 259 55 9 chr1 71895994 71896214 -210297450 - MIR SINE MIR -13 249 20 304 261 242 7 chr1 71896320 71896473 -210297191 + MIR SINE MIR 21 209 -53 1717 122 0 91 chr1 71896522 71896841 -210296823 - AluSx SINE Alu -21 291 2 1726 139 3 54 chr1 71897485 71897814 -210295850 - AluJb SINE Alu 0 316 3 258 287 164 33 chr1 71897916 71898038 -210295626 - MIR SINE MIR -122 140 3 441 261 191 25 chr1 71898212 71898411 -210295253 + MIR SINE MIR 31 262 0 195 42 0 0 chr1 71898712 71898736 -210294928 + (A)n Simple_repeat Simple_repeat 1 24 0 36 0 0 0 chr1 71900140 71900176 -210293488 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 71901363 71901384 -210292280 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr1 71901667 71901701 -210291963 + (T)n Simple_repeat Simple_repeat 1 34 0 281 333 70 54 chr1 71905034 71905163 -210288501 - MIR SINE MIR -63 145 14 752 265 25 10 chr1 71905272 71905476 -210288188 - MER58C DNA MER1_type -3 212 6 322 206 27 14 chr1 71905746 71905819 -210287845 + MER116 DNA Mariner 7 80 0 692 286 187 11 chr1 71906587 71906961 -210286703 - L2 LINE L2 -67 3246 2807 264 194 14 42 chr1 71906993 71907065 -210286599 + L2 LINE L2 3224 3293 -20 547 302 106 8 chr1 71907829 71907899 -210285765 + MIR SINE MIR 2 64 -198 1835 164 3 16 chr1 71907899 71908204 -210285460 - AluJb SINE Alu -11 301 1 547 302 106 8 chr1 71908204 71908368 -210285296 + MIR SINE MIR 64 259 -3 22 35 0 0 chr1 71908405 71908434 -210285230 + AT_rich Low_complexity Low_complexity 1 29 0 1767 130 72 7 chr1 71908913 71909190 -210284474 + AluSx SINE Alu 1 295 -17 236 252 87 70 chr1 71909265 71909380 -210284284 - MIR3 SINE MIR -3 205 89 270 309 204 7 chr1 71909424 71909576 -210284088 - MIR SINE MIR -14 248 67 1108 183 107 81 chr1 71910894 71911277 -210282387 + MLT1C LTR MaLR 75 467 0 2117 93 31 3 chr1 71911973 71912264 -210281400 + AluSc SINE Alu 2 300 -9 1916 157 3 6 chr1 71912266 71912579 -210281085 + AluJo SINE Alu 1 312 0 244 274 204 18 chr1 71913312 71913425 -210280239 + L2 LINE L2 3138 3271 -1 2256 129 38 57 chr1 71913449 71913820 -210279844 - THE1B LTR MaLR 0 364 1 466 228 7 21 chr1 71913938 71914072 -210279592 - MIR SINE MIR -63 145 20 2219 113 0 6 chr1 71914383 71914694 -210278970 - AluSx SINE Alu -3 309 1 511 260 57 106 chr1 71914727 71914992 -210278672 + MIR SINE MIR 11 262 0 370 202 29 10 chr1 71915002 71915106 -210278558 + (TAA)n Simple_repeat Simple_repeat 1 106 0 250 294 50 61 chr1 71916023 71916203 -210277461 - L3 LINE CR1 -298 1279 1102 246 286 56 48 chr1 71916544 71916670 -210276994 + LTR67 LTR ERVL 410 536 -21 287 221 0 44 chr1 71916676 71916744 -210276920 + C-rich Low_complexity Low_complexity 1 65 0 2112 138 42 0 chr1 71918058 71918392 -210275272 + L1MB3 LINE L1 5836 6183 0 1110 196 36 5 chr1 71919816 71920036 -210273628 + MIR SINE MIR 22 248 -14 208 240 250 30 chr1 71920047 71920147 -210273517 - L2 LINE L2 -1 3271 3150 273 319 18 9 chr1 71920618 71920731 -210272933 - MIR SINE MIR -19 243 130 2140 132 0 10 chr1 71920890 71921193 -210272471 + AluSx SINE Alu 3 302 -10 328 221 117 0 chr1 71921294 71921371 -210272293 + L2 LINE L2 3228 3313 0 218 56 28 0 chr1 71921591 71921627 -210272037 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 712 259 51 42 chr1 71927815 71928051 -210265613 - MIR SINE MIR -23 239 2 681 256 0 0 chr1 71928367 71928504 -210265160 + MIR SINE MIR 62 198 -64 286 289 32 63 chr1 71929006 71929196 -210264468 - L2 LINE L2 -213 3059 2876 455 264 43 108 chr1 71929689 71929966 -210263698 - MIR SINE MIR 0 262 4 479 262 35 21 chr1 71930559 71930704 -210262960 - MIR SINE MIR -47 215 69 497 304 113 32 chr1 71930855 71931299 -210262365 + L2 LINE L2 2622 3087 -185 331 268 109 61 chr1 71931358 71931796 -210261868 - MLT1L LTR MaLR -2 613 150 1541 166 88 32 chr1 71931875 71932159 -210261505 + AluJb SINE Alu 1 300 -12 211 330 77 11 chr1 71932230 71932321 -210261343 + L2 LINE L2 3133 3229 -43 25 0 0 0 chr1 71932679 71932704 -210260960 + AT_rich Low_complexity Low_complexity 1 25 0 404 62 16 0 chr1 71933605 71933669 -210259995 + (TG)n Simple_repeat Simple_repeat 1 65 0 590 330 15 0 chr1 71937184 71937381 -210256283 + MIR SINE MIR 33 232 -30 * 660 279 33 33 chr1 71937336 71937580 -210256084 - MIR SINE MIR -3 259 16 1142 119 6 6 chr1 71937917 71938085 -210255579 + AluSq SINE Alu 1 168 -145 444 262 0 0 chr1 71938105 71938304 -210255360 + T-rich Low_complexity Low_complexity 1 199 0 329 243 162 25 chr1 71938354 71938583 -210255081 - L1 LINE L1 -2841 3305 3075 1249 147 0 5 chr1 71938727 71938918 -210254746 - AluSx SINE Alu -122 190 1 265 385 0 0 chr1 71938918 71939022 -210254642 + MER5B DNA MER1_type 39 142 -36 2059 230 78 6 chr1 71939028 71939555 -210254109 - L1ME3A LINE L1 -18 6152 5588 189 0 0 0 chr1 71940338 71940359 -210253305 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2169 111 0 0 chr1 71940359 71940639 -210253025 - AluSx SINE Alu -32 280 1 207 352 0 0 chr1 71940989 71941043 -210252621 + MER91B DNA MER1_type 1 54 -136 191 264 42 42 chr1 71941090 71941162 -210252502 + MIR SINE MIR 157 228 -34 2003 130 29 3 chr1 71941269 71941576 -210252088 - MER44D DNA MER2_type -1 608 24 887 163 11 45 chr1 71941992 71942170 -210251494 + MER30 DNA MER1_type 58 229 -1 272 283 43 11 chr1 71943046 71943138 -210250526 + MIR SINE MIR 124 218 -44 1556 207 3 25 chr1 71943176 71943495 -210250169 - MER46C DNA MER2_type -17 321 10 2126 112 3 13 chr1 71943570 71943875 -210249789 - AluSx SINE Alu -10 302 1 456 344 104 5 chr1 71944016 71944228 -210249436 + L3 LINE CR1 1344 1576 -1 341 231 17 98 chr1 71944411 71944584 -210249080 + MER103 DNA DNA 1 159 -7 217 300 73 45 chr1 71944675 71944785 -210248879 - L2 LINE L2 -13 3259 3147 2256 93 0 0 chr1 71944856 71945145 -210248519 - AluSg SINE Alu -21 289 1 25 0 0 0 chr1 71945589 71945614 -210248050 + AT_rich Low_complexity Low_complexity 1 25 0 1905 131 3 24 chr1 71946160 71946458 -210247206 + AluJo SINE Alu 3 294 -18 301 221 133 51 chr1 71946460 71946655 -210247009 - L1ME4a LINE L1 -19 6102 5892 860 239 96 17 chr1 71946682 71946983 -210246681 - L1ME4a LINE L1 -264 5857 5533 413 262 33 49 chr1 71947461 71947583 -210246081 - L2 LINE L2 -1 3271 3152 270 298 12 12 chr1 71947618 71947702 -210245962 + L2 LINE L2 3145 3228 -44 628 137 29 34 chr1 71948639 71948814 -210244850 + CT-rich Low_complexity Low_complexity 3 176 0 21 0 0 0 chr1 71949046 71949067 -210244597 + AT_rich Low_complexity Low_complexity 1 21 0 1761 40 0 0 chr1 71949850 71950052 -210243612 + L1PA4 LINE L1 5949 6150 -5 388 271 102 63 chr1 71950063 71950347 -210243317 + HAL1 LINE L1 1375 1669 -838 2018 135 0 0 chr1 71950521 71950795 -210242869 - AluSx SINE Alu -38 274 1 21 36 0 0 chr1 71951016 71951044 -210242620 + AT_rich Low_complexity Low_complexity 1 28 0 1810 133 33 20 chr1 71951050 71951350 -210242314 + AluJo SINE Alu 3 306 -6 256 256 103 43 chr1 71951513 71951630 -210242034 + L2 LINE L2 3190 3313 0 555 233 41 2 chr1 71952052 71952205 -210241459 - MIR SINE MIR -62 146 39 234 0 0 0 chr1 71952239 71952265 -210241399 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2183 153 60 35 chr1 71952362 71952879 -210240785 + MLT2A2 LTR ERVL 1 554 0 620 251 37 18 chr1 71952938 71953101 -210240563 - MIR SINE MIR -85 177 12 380 344 44 46 chr1 71953137 71953550 -210240114 + L2 LINE L2 2563 2974 -340 273 278 53 86 chr1 71954156 71954307 -210239357 - MIR SINE MIR -58 150 29 1445 207 114 18 chr1 71954320 71954653 -210239011 + MLT1A1 LTR MaLR 1 365 0 413 241 48 41 chr1 71954665 71954810 -210238854 - MER91A DNA MER1_type -1 195 50 24 32 0 0 chr1 71955359 71955390 -210238274 + AT_rich Low_complexity Low_complexity 1 31 0 339 373 46 13 chr1 71955797 71955950 -210237714 + L2 LINE L2 3113 3270 -2 1248 152 5 5 chr1 71956049 71956246 -210237418 + MLT1C LTR MaLR 1 197 -270 630 28 0 0 chr1 71956247 71956318 -210237346 - MER4A LTR ERV1 0 664 594 2442 119 59 9 chr1 71956418 71956921 -210236743 - MER4B LTR ERV1 -11 599 1 1140 168 10 5 chr1 71956921 71957116 -210236548 + MLT1C LTR MaLR 195 390 -77 550 229 173 40 chr1 71957331 71957580 -210236084 + LTR16A LTR ERVL 91 372 -78 3999 120 18 24 chr1 71957728 71957867 -210235797 - MER61E LTR ERV1 0 569 431 1929 75 0 0 chr1 71957867 71958106 -210235558 + AluY SINE Alu 65 303 -8 3999 120 18 24 chr1 71958106 71958539 -210235125 - MER61E LTR ERV1 -138 431 1 450 316 8 8 chr1 71958568 71958701 -210234963 + MIR SINE MIR 10 142 -120 735 207 141 5 chr1 71958778 71958976 -210234688 + L1MD2 LINE L1 6030 6254 -105 326 250 12 24 chr1 71958976 71959060 -210234604 + MIR SINE MIR 139 221 -41 345 258 76 38 chr1 71959071 71959203 -210234461 + L1ME4a LINE L1 5964 6100 -21 22 35 0 0 chr1 71959232 71959261 -210234403 + AT_rich Low_complexity Low_complexity 1 29 0 676 326 80 30 chr1 71959410 71959809 -210233855 + MLT1K LTR MaLR 169 587 -1 1653 160 0 122 chr1 71960280 71960623 -210233041 - AluJo SINE Alu 0 302 2 439 248 10 10 chr1 71960773 71960874 -210232790 - MIR SINE MIR -76 132 32 575 326 71 8 chr1 71961625 71961864 -210231800 - MIR SINE MIR -8 254 1 22 0 0 0 chr1 71961958 71961980 -210231684 + AT_rich Low_complexity Low_complexity 1 22 0 8076 28 0 11 chr1 71961980 71962915 -210230749 - L1PA4 LINE L1 -3 6152 5220 1013 167 167 51 chr1 71963039 71963284 -210230380 + L1MD2 LINE L1 6030 6313 -46 2390 48 0 24 chr1 71963284 71963604 -210230060 + AluY SINE Alu 1 313 0 1013 167 167 51 chr1 71963604 71963633 -210230031 + L1MD2 LINE L1 6313 6337 -22 1266 209 73 33 chr1 71963683 71963754 -210229910 - MER2 DNA MER2_type -1 343 276 1686 155 9 62 chr1 71963754 71964076 -210229588 + AluJo SINE Alu 1 305 -7 1266 209 73 33 chr1 71964076 71964334 -210229330 - MER2 DNA MER2_type -68 276 1 402 104 52 39 chr1 71964724 71964801 -210228863 + L1ME LINE L1 5552 5629 -492 3188 171 76 33 chr1 71965072 71965835 -210227829 + L1MB7 LINE L1 4770 5665 -501 2237 121 0 0 chr1 71965835 71966141 -210227523 + AluSq SINE Alu 3 308 -5 3188 171 76 33 chr1 71966141 71966666 -210226998 + L1MB7 LINE L1 5665 6166 0 2843 108 44 5 chr1 71967897 71968325 -210225339 - LTR56 LTR ERV1 0 445 1 4029 112 18 0 chr1 71968552 71969096 -210224568 + MER41A LTR ERV1 1 554 0 379 267 160 29 chr1 71969267 71969473 -210224191 + MIR SINE MIR 18 250 -12 2585 23 3 10 chr1 71969856 71970156 -210223508 + AluY SINE Alu 1 298 -13 2674 122 5 8 chr1 71970353 71970729 -210222935 + THE1C LTR MaLR 1 375 0 231 119 0 0 chr1 71970890 71970932 -210222732 - LTR66 LTR ERVL -171 439 398 248 177 0 48 chr1 71970937 71970999 -210222665 - L1MCa LINE L1 -4362 2064 2006 233 222 0 16 chr1 71970999 71971062 -210222602 + L1MCa LINE L1 2006 2067 -4359 * 240 290 0 32 chr1 71971008 71971101 -210222563 - L1MC4 LINE L1 -1339 6703 6614 * 495 253 77 6 chr1 71971069 71971239 -210222425 + L1ME4a LINE L1 5935 6116 -5 379 230 115 14 chr1 71971631 71971770 -210221894 - MIR SINE MIR -4 258 106 5896 156 42 25 chr1 71972652 71973484 -210220180 + L1MC1 LINE L1 5192 6046 -287 2269 120 49 12 chr1 71973484 71973808 -210219856 - MER1B DNA MER1_type -1 336 1 5896 156 42 25 chr1 71973808 71974102 -210219562 + L1MC1 LINE L1 6046 6333 0 299 296 53 117 chr1 71974254 71974724 -210218940 - L2 LINE L2 -22 3250 2811 186 337 41 31 chr1 71974771 71974869 -210218795 + L2 LINE L2 3172 3270 -2 218 290 97 48 chr1 71975794 71975918 -210217746 + L2 LINE L2 3143 3272 0 1160 178 72 0 chr1 71976118 71976326 -210217338 + MER58A DNA MER1_type 1 223 -1 225 338 44 29 chr1 71976400 71976536 -210217128 - MIR3 SINE MIR -15 193 56 248 310 101 0 chr1 71977301 71977430 -210216234 - MIR3 SINE MIR -28 180 39 207 263 53 0 chr1 71977448 71977505 -210216159 + L2 LINE L2 3213 3272 0 447 268 16 16 chr1 71977519 71977632 -210216032 - L2 LINE L2 -8 3264 3149 312 27 0 0 chr1 71977632 71977669 -210215995 + (TG)n Simple_repeat Simple_repeat 1 37 0 1161 220 12 4 chr1 71977724 71977969 -210215695 - MIR SINE MIR -1 261 15 207 250 0 0 chr1 71977996 71978036 -210215628 + (TGAG)n Simple_repeat Simple_repeat 1 40 0 711 298 34 0 chr1 71978248 71978453 -210215211 - MIR SINE MIR -19 243 32 655 202 48 0 chr1 71978490 71978614 -210215050 + MER5B DNA MER1_type 1 130 -48 1062 117 82 0 chr1 71978626 71978797 -210214867 - L1MA8 LINE L1 -4 6287 6103 369 81 65 24 chr1 71978809 71978933 -210214731 + (TTATA)n Simple_repeat Simple_repeat 2 130 0 462 172 0 40 chr1 71978936 71979035 -210214629 - L1MA8 LINE L1 -177 6114 6020 1869 114 8 0 chr1 71979048 71979310 -210214354 - AluSc SINE Alu -10 299 36 181 250 58 0 chr1 71979668 71979720 -210213944 - MIR SINE MIR -32 230 176 706 279 72 30 chr1 71980984 71981221 -210212443 + MIR SINE MIR 15 261 -1 373 286 121 60 chr1 71982361 71982543 -210211121 - MIR SINE MIR -27 235 43 7255 107 17 4 chr1 71982549 71983692 -210209972 + L1MA2 LINE L1 5149 6304 0 2896 16 0 0 chr1 71983779 71984095 -210209569 - AluYb8 SINE Alu -2 316 1 26 50 0 0 chr1 71984227 71984267 -210209397 + AT_rich Low_complexity Low_complexity 1 40 0 487 280 29 34 chr1 71984607 71984782 -210208882 - MIR SINE MIR -69 193 20 242 191 21 0 chr1 71985017 71985064 -210208600 - L2 LINE L2 -2 3311 3264 283 247 74 12 chr1 71985084 71985165 -210208499 + L2 LINE L2 3186 3271 -1 336 206 128 29 chr1 71985237 71985337 -210208327 - L2 LINE L2 0 3313 3204 463 289 92 17 chr1 71985337 71985510 -210208154 + MIR SINE MIR 1 186 -76 2696 178 27 25 chr1 71986036 71986547 -210207117 - MLT2B1 LTR ERVL -8 512 1 448 321 10 88 chr1 71986633 71986965 -210206699 - L2 LINE L2 -189 3083 2776 341 213 0 0 chr1 71986986 71987047 -210206617 + L2 LINE L2 3245 3305 -8 2233 99 10 0 chr1 71987149 71987442 -210206222 + AluSq SINE Alu 1 296 -17 405 312 32 19 chr1 71987503 71987660 -210206004 + MIR SINE MIR 24 182 -80 345 329 53 14 chr1 71988153 71988316 -210205348 + MIR3 SINE MIR 11 182 -26 979 149 60 0 chr1 71988522 71988690 -210204974 + MER20 DNA MER1_type 42 219 0 261 229 0 0 chr1 71988690 71988738 -210204926 + MIR SINE MIR 118 165 -97 4429 148 39 48 chr1 71989720 71989986 -210203678 + L1MB3 LINE L1 5346 5613 -570 2086 138 3 0 chr1 71989986 71990291 -210203373 + AluSx SINE Alu 1 306 -6 4429 148 39 48 chr1 71990291 71990870 -210202794 + L1MB3 LINE L1 5613 6183 0 218 236 0 14 chr1 71991166 71991238 -210202426 + CT-rich Low_complexity Low_complexity 2 72 0 368 319 86 35 chr1 71991336 71991649 -210202015 + L1MC4a LINE L1 4903 5231 -915 946 248 208 28 chr1 71991671 71991839 -210201825 + L1MC4a LINE L1 5254 5390 -2418 1839 100 0 20 chr1 71991839 71992112 -210201552 + AluSg SINE Alu 40 307 0 946 248 208 28 chr1 71992112 71992451 -210201213 + L1MC4a LINE L1 5390 5854 -1954 377 220 156 9 chr1 71992826 71992935 -210200729 + MIR3 SINE MIR 81 205 -3 741 274 73 9 chr1 71992970 71993189 -210200475 + MIR SINE MIR 11 243 -19 251 186 0 17 chr1 71993203 71993262 -210200402 + CT-rich Low_complexity Low_complexity 6 63 0 678 193 8 0 chr1 71993720 71993839 -210199825 - L1PB4 LINE L1 -7 6149 6030 199 348 25 59 chr1 71993906 71994024 -210199640 - MER5A DNA MER1_type -29 160 47 21 0 0 0 chr1 71995495 71995516 -210198148 + AT_rich Low_complexity Low_complexity 1 21 0 1972 159 7 0 chr1 71995690 71995992 -210197672 - AluJb SINE Alu -8 304 1 516 300 27 0 chr1 71996172 71996322 -210197342 - MIR SINE MIR -21 241 88 571 266 159 14 chr1 71996734 71996941 -210196723 + MIR SINE MIR 1 237 -25 402 284 86 37 chr1 71997136 71997298 -210196366 + MIR3 SINE MIR 28 197 -11 314 221 0 29 chr1 72000085 72000153 -210193511 - MER116 DNA Mariner -10 70 5 324 271 110 25 chr1 72000425 72000543 -210193121 + L2 LINE L2 3145 3272 0 361 267 117 8 chr1 72000967 72001087 -210192577 - MIR SINE MIR -123 139 7 408 278 68 38 chr1 72001320 72001453 -210192211 - L2 LINE L2 0 3313 3177 272 315 112 21 chr1 72001713 72001856 -210191808 - L2 LINE L2 0 3272 3117 186 43 0 0 chr1 72002131 72002154 -210191510 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 1391 203 35 108 chr1 72002177 72002576 -210191088 + MLT1A2 LTR MaLR 1 370 -4 1407 259 69 20 chr1 72002828 72003218 -210190446 + MLT1I LTR MaLR 1 409 0 668 299 33 5 chr1 72003587 72003771 -210189893 + MIR SINE MIR 20 208 -54 207 139 0 0 chr1 72003784 72003820 -210189844 + (TTA)n Simple_repeat Simple_repeat 2 37 0 502 247 62 37 chr1 72004687 72004849 -210188815 - L2 LINE L2 0 3313 3148 1170 262 134 0 chr1 72005494 72005853 -210187811 - LTR16C LTR ERVL 0 491 85 1924 102 0 61 chr1 72006107 72006434 -210187230 - AluSx SINE Alu 0 315 7 658 165 8 39 chr1 72007058 72007185 -210186479 + MIR SINE MIR 112 234 -28 368 252 69 46 chr1 72007223 72007237 -210186427 - L2 LINE L2 0 3313 3301 1747 160 20 30 chr1 72007237 72007537 -210186127 - AluJo SINE Alu -15 297 1 368 252 69 46 chr1 72007537 72007653 -210186011 - L2 LINE L2 -12 3301 3180 482 257 93 49 chr1 72008435 72008618 -210185046 + MIR SINE MIR 23 213 -49 236 241 35 0 chr1 72009421 72009479 -210184185 + GA-rich Low_complexity Low_complexity 2 61 0 248 263 339 6 chr1 72009545 72009716 -210183948 + MIR SINE MIR 7 234 -28 225 358 30 0 chr1 72009819 72009886 -210183778 + L2 LINE L2 3152 3220 -52 590 330 67 9 chr1 72010359 72010583 -210183081 - MIR SINE MIR -6 256 20 29 47 0 0 chr1 72010895 72010938 -210182726 + AT_rich Low_complexity Low_complexity 1 43 0 317 376 51 13 chr1 72011342 72011499 -210182165 - L2 LINE L2 0 3272 3110 557 238 73 12 chr1 72011525 72011689 -210181975 - MIR SINE MIR 0 262 89 208 279 90 49 chr1 72011772 72011894 -210181770 - L2 LINE L2 -207 3065 2939 189 256 0 0 chr1 72012401 72012440 -210181224 + L2 LINE L2 3251 3289 -24 297 0 0 0 chr1 72012444 72012477 -210181187 + (CA)n Simple_repeat Simple_repeat 2 34 0 182 354 42 10 chr1 72012676 72012772 -210180892 - MIR3 SINE MIR -38 170 72 23 0 0 0 chr1 72015195 72015218 -210178446 + AT_rich Low_complexity Low_complexity 1 23 0 603 257 72 27 chr1 72015508 72015647 -210178017 - MIR SINE MIR -26 236 82 1543 194 13 36 chr1 72015647 72015956 -210177708 - AluJo SINE Alu -10 302 1 603 257 72 27 chr1 72015956 72016038 -210177626 - MIR SINE MIR -180 82 5 712 169 8 0 chr1 72016440 72016564 -210177100 - Tigger1 DNA MER2_type -3 2415 2291 * 8668 104 14 1 chr1 72016559 72017879 -210175785 - Tigger1 DNA MER2_type -521 1897 561 10782 119 17 3 chr1 72017981 72019688 -210173976 - Tigger1 DNA MER2_type -688 1730 1 25 0 0 0 chr1 72020175 72020200 -210173464 + AT_rich Low_complexity Low_complexity 1 25 0 372 311 114 0 chr1 72020277 72020409 -210173255 - MIR3 SINE MIR -46 162 16 261 239 0 28 chr1 72021006 72021077 -210172587 + L2 LINE L2 3245 3313 0 1823 158 7 9 chr1 72021497 72021856 -210171808 + Tigger3(Golem) DNA MER2_type 1 3028 -1 802 149 7 28 chr1 72021921 72022062 -210171602 - FLAM_C SINE Alu -5 138 1 407 230 170 44 chr1 72022282 72022417 -210171247 + MER97b DNA MER1_type? 1 152 -901 1992 161 34 78 chr1 72022429 72022902 -210170762 + MLT1C LTR MaLR 6 457 -10 311 177 32 16 chr1 72023301 72023363 -210170301 + MER5A DNA MER1_type 10 72 -117 355 214 77 51 chr1 72023395 72023512 -210170152 + MER5A DNA MER1_type 7 126 -63 231 255 255 0 chr1 72023706 72023812 -210169852 - MIR SINE MIR -32 230 98 1887 145 4 0 chr1 72023812 72024088 -210169576 + AluJb SINE Alu 2 278 -34 890 58 8 0 chr1 72024088 72024209 -210169455 + (GAAA)n Simple_repeat Simple_repeat 4 125 0 1307 32 0 0 chr1 72024212 72024369 -210169295 + L1PA2 LINE L1 5999 6155 0 256 147 0 29 chr1 72024371 72024439 -210169225 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 277 342 82 82 chr1 72024496 72024876 -210168788 + L2 LINE L2 2884 3263 -9 559 273 115 6 chr1 72024884 72025067 -210168597 + MIR SINE MIR 49 251 -11 350 315 132 36 chr1 72025120 72025339 -210168325 - MIR SINE MIR 0 262 23 1972 94 0 0 chr1 72025896 72026183 -210167481 + AluSq SINE Alu 38 313 0 401 111 0 0 chr1 72026183 72026246 -210167418 + MLT2A2 LTR ERVL 391 453 0 388 182 36 45 chr1 72026760 72026870 -210166794 + 7SK RNA RNA 1 109 -84 202 339 127 0 chr1 72027278 72027396 -210166268 + L2 LINE L2 2196 2328 -986 188 286 0 0 chr1 72027399 72027441 -210166223 - L2 LINE L2 -15 3298 3257 387 0 0 0 chr1 72027514 72027557 -210166107 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 7065 7 0 1 chr1 72027557 72028379 -210165285 - L1HS LINE L1 -10 6145 5323 * 15614 23 0 0 chr1 72028372 72030294 -210163370 + L1HS LINE L1 3420 5341 -805 262 345 54 20 chr1 72030319 72030467 -210163197 - MIR SINE MIR -20 242 90 235 232 0 49 chr1 72031653 72031735 -210161929 - MER116 DNA Mariner 0 80 3 559 242 0 16 chr1 72031735 72031859 -210161805 + FLAM_A SINE Alu 1 122 -11 23 0 0 0 chr1 72031859 72031882 -210161782 + AT_rich Low_complexity Low_complexity 1 23 0 310 212 94 24 chr1 72032947 72032975 -210160689 + L2 LINE L2 3182 3207 -65 1407 160 31 141 chr1 72032975 72033393 -210160271 - MLT1A2 LTR MaLR -1 373 2 310 212 94 24 chr1 72033393 72033449 -210160215 + L2 LINE L2 3207 3272 0 503 115 115 48 chr1 72033630 72033645 -210160019 - FLAM_C SINE Alu -169 143 130 2190 127 3 7 chr1 72033645 72033953 -210159711 - AluSx SINE Alu -5 307 1 503 115 115 48 chr1 72033953 72034041 -210159623 - FLAM_C SINE Alu -182 130 33 712 267 39 47 chr1 72034927 72035182 -210158482 - MIR SINE MIR 0 262 10 2014 147 3 10 chr1 72035219 72035533 -210158131 + AluSx SINE Alu 1 312 0 2006 252 111 29 chr1 72036585 72037693 -210155971 + L1MEc LINE L1 90 1211 -5006 334 203 14 27 chr1 72037788 72037862 -210155802 + Tigger2 DNA MER2_type 1 73 -2645 877 215 0 6 chr1 72037895 72038072 -210155592 - MER8 DNA MER2_type -62 177 2 1934 86 64 4 chr1 72038136 72038436 -210155228 - AluSp SINE Alu 0 316 1 203 211 359 42 chr1 72038824 72038966 -210154698 + L3b LINE CR1 1256 1442 -141 1536 164 3 77 chr1 72038998 72039308 -210154356 - AluJb SINE Alu -25 287 1 1472 179 44 37 chr1 72039734 72040031 -210153633 - AluJb SINE Alu -13 299 1 2072 131 0 3 chr1 72040097 72040408 -210153256 + AluSx SINE Alu 1 310 0 520 352 96 0 chr1 72040904 72041123 -210152541 + L3 LINE CR1 1308 1547 -30 2218 104 7 0 chr1 72041130 72041429 -210152235 + AluSx SINE Alu 1 301 -11 953 209 6 0 chr1 72041442 72041614 -210152050 + FAM SINE Alu 3 175 0 346 295 57 9 chr1 72041749 72041854 -210151810 + MIR SINE MIR 21 130 -78 21 0 0 0 chr1 72042686 72042707 -210150957 + AT_rich Low_complexity Low_complexity 1 21 0 1974 135 0 35 chr1 72042707 72043019 -210150645 + AluJo SINE Alu 1 301 -11 1544 185 31 57 chr1 72043495 72043879 -210149785 + MLT1B LTR MaLR 1 374 -16 21 0 0 0 chr1 72044574 72044595 -210149069 + AT_rich Low_complexity Low_complexity 1 21 0 205 439 56 0 chr1 72045564 72045671 -210147993 + L2 LINE L2 3117 3229 -43 2304 104 3 0 chr1 72046366 72046663 -210147001 + AluSx SINE Alu 1 298 -14 547 157 10 29 chr1 72046731 72046833 -210146831 - FRAM SINE Alu -12 164 65 598 239 50 35 chr1 72047203 72047584 -210146080 + MLT1J LTR MaLR 29 459 -52 671 226 81 68 chr1 72047673 72047908 -210145756 - MIR SINE MIR -24 238 1 184 359 94 26 chr1 72048113 72048230 -210145434 + L2 LINE L2 3096 3220 -52 2034 141 3 7 chr1 72048276 72048575 -210145089 + AluJb SINE Alu 1 298 -14 686 211 0 0 chr1 72048664 72048792 -210144872 + MER3 DNA MER1_type 2 129 -80 209 56 0 28 chr1 72048794 72048830 -210144834 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 204 196 0 39 chr1 72049054 72049105 -210144559 + A-rich Low_complexity Low_complexity 2 50 0 2072 142 0 22 chr1 72050545 72050863 -210142801 + AluSx SINE Alu 1 311 -1 248 311 115 40 chr1 72050904 72051052 -210142612 - MIR SINE MIR 0 262 104 360 0 0 0 chr1 72051553 72051593 -210142071 + (CA)n Simple_repeat Simple_repeat 2 41 0 326 280 33 25 chr1 72052381 72052569 -210141095 + MIR SINE MIR 18 262 0 234 0 0 0 chr1 72052707 72052733 -210140931 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 408 304 107 28 chr1 72052802 72053033 -210140631 - MIR SINE MIR -10 252 3 445 332 94 14 chr1 72053736 72054013 -210139651 - L2 LINE L2 -72 3241 2943 * 919 313 61 12 chr1 72053990 72054441 -210139223 + L2 LINE L2 2756 3228 -85 627 38 0 0 chr1 72054734 72054813 -210138851 - L1PA5 LINE L1 -5 6149 6071 330 254 33 25 chr1 72056000 72056122 -210137542 - LTR67 LTR ERVL -7 550 428 670 272 53 34 chr1 72056437 72056643 -210137021 - MIR SINE MIR -6 256 47 219 309 32 43 chr1 72056859 72056953 -210136711 + MIR3 SINE MIR 4 96 -112 188 259 37 0 chr1 72057036 72057090 -210136574 + MIR SINE MIR 96 151 -111 470 263 129 21 chr1 72057394 72057580 -210136084 + MLT1J2 LTR MaLR 1 206 -244 304 214 13 0 chr1 72057589 72057664 -210136000 + MLT1J2 LTR MaLR 266 323 -127 1144 147 28 37 chr1 72057830 72058048 -210135616 - MER20 DNA MER1_type -2 217 2 24 32 0 0 chr1 72058061 72058092 -210135572 + AT_rich Low_complexity Low_complexity 1 31 0 182 364 7 93 chr1 72060834 72060985 -210132679 - MIR3 SINE MIR -60 148 11 755 266 30 23 chr1 72061270 72061503 -210132161 + MIR SINE MIR 15 246 -16 846 76 25 0 chr1 72061549 72061668 -210131996 + L1PA10 LINE L1 6028 6149 -19 189 0 0 0 chr1 72061668 72061689 -210131975 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 369 184 65 89 chr1 72062564 72062635 -210131029 + MER103 DNA DNA 2 73 -93 1963 132 14 3 chr1 72062635 72062930 -210130734 - AluSx SINE Alu -14 298 1 369 184 65 89 chr1 72062930 72063026 -210130638 + MER103 DNA DNA 73 165 -1 206 296 37 49 chr1 72063163 72063244 -210130420 - L2 LINE L2 -85 3187 3108 210 273 27 91 chr1 72063250 72063360 -210130304 - L2 LINE L2 -352 2920 2818 800 290 20 12 chr1 72063376 72063628 -210130036 - MIR SINE MIR -2 260 7 842 248 8 55 chr1 72065677 72065931 -210127733 - MIR SINE MIR -20 242 1 414 188 109 10 chr1 72066147 72066248 -210127416 + MIR SINE MIR 76 186 -76 1663 184 10 14 chr1 72066849 72067137 -210126527 - AluJb SINE Alu -25 287 1 606 182 0 53 chr1 72067216 72067348 -210126316 - L2 LINE L2 0 3313 3189 207 0 0 0 chr1 72067866 72067889 -210125775 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 198 302 132 0 chr1 72068307 72068413 -210125251 + MIR SINE MIR 87 206 -56 238 326 0 42 chr1 72069524 72069619 -210124045 - L2 LINE L2 -4 3309 3219 2065 131 0 31 chr1 72070697 72071018 -210122646 + AluSx SINE Alu 1 311 -1 502 388 4 26 chr1 72071600 72071871 -210121793 - L2 LINE L2 0 3272 3008 216 0 0 0 chr1 72071907 72071931 -210121733 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2277 91 3 10 chr1 72071958 72072255 -210121409 + AluSx SINE Alu 1 295 -17 2614 174 61 10 chr1 72072262 72072757 -210120907 + MLT2B1 LTR ERVL 1 520 0 385 326 66 62 chr1 72072880 72073138 -210120526 + MIR SINE MIR 4 262 0 301 239 152 0 chr1 72073682 72073774 -210119890 - L2 LINE L2 -11 3261 3156 520 246 155 0 chr1 72074215 72074357 -210119307 - MIR SINE MIR -30 232 69 316 186 43 0 chr1 72074816 72074886 -210118778 + MIR SINE MIR 57 129 -133 1184 292 65 31 chr1 72074891 72075414 -210118250 - L2 LINE L2 0 3313 2774 588 184 61 7 chr1 72076992 72077139 -210116525 + L1ME4a LINE L1 5955 6109 -12 355 290 118 11 chr1 72078858 72079051 -210114613 + MIR SINE MIR 38 251 -11 425 246 59 0 chr1 72079666 72079784 -210113880 - MIR SINE MIR -63 199 75 622 270 38 51 chr1 72080309 72080702 -210112962 + L1ME4a LINE L1 5497 5884 -237 432 252 56 0 chr1 72080702 72080809 -210112855 + MIR SINE MIR 106 218 -44 272 308 51 8 chr1 72080957 72081074 -210112590 - MIR SINE MIR -137 125 4 28 0 0 0 chr1 72081746 72081774 -210111890 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 72081848 72081873 -210111791 + AT_rich Low_complexity Low_complexity 1 25 0 750 258 140 22 chr1 72081968 72082197 -210111467 + MIR SINE MIR 7 262 0 295 237 53 0 chr1 72082220 72082296 -210111368 + L2 LINE L2 3155 3234 -38 355 349 114 0 chr1 72082524 72082690 -210110974 - L2 LINE L2 0 3272 3088 1233 144 82 43 chr1 72083062 72083367 -210110297 + MER33 DNA MER1_type 3 319 -5 249 196 0 0 chr1 72083969 72084025 -210109639 + GA-rich Low_complexity Low_complexity 2 57 0 241 239 30 75 chr1 72084030 72084164 -210109500 + L1ME4a LINE L1 5964 6091 -30 199 244 0 0 chr1 72084730 72084775 -210108889 - L2 LINE L2 -2 3311 3267 32 0 0 0 chr1 72085630 72085662 -210108002 + AT_rich Low_complexity Low_complexity 1 32 0 271 217 87 14 chr1 72088048 72088117 -210105547 + MIR SINE MIR 61 134 -128 287 261 29 0 chr1 72088383 72088452 -210105212 - L2 LINE L2 -55 3258 3188 238 283 0 0 chr1 72089090 72089143 -210104521 + L2 LINE L2 3206 3258 -14 275 329 0 0 chr1 72089334 72089407 -210104257 - L2 LINE L2 -2 3311 3239 2052 136 33 0 chr1 72089497 72089798 -210103866 - AluSx SINE Alu -1 311 1 2847 218 82 15 chr1 72089814 72090599 -210103065 + L1ME1 LINE L1 5317 6153 -13 2139 123 3 3 chr1 72090610 72090920 -210102744 - AluSx SINE Alu -2 310 1 598 318 85 5 chr1 72091137 72091360 -210102304 - MIR SINE MIR -14 248 8 1879 219 17 15 chr1 72091894 72092368 -210101296 - L1MB7 LINE L1 -1 6183 5709 441 293 113 7 chr1 72092374 72092524 -210101140 - MIR SINE MIR -82 180 15 1022 198 4 76 chr1 72092644 72092941 -210100723 + L1MA10 LINE L1 6056 6333 -1 587 293 26 5 chr1 72094897 72095096 -210098568 - MIR SINE MIR -60 202 1 436 295 77 66 chr1 72095397 72095746 -210097918 + L2 LINE L2 2856 3208 -64 2019 131 0 24 chr1 72095847 72095980 -210097684 + AluJb SINE Alu 14 149 -163 2174 107 70 14 chr1 72095980 72096335 -210097329 + THE1C LTR MaLR 1 375 0 2019 131 0 24 chr1 72096335 72096498 -210097166 + AluJb SINE Alu 149 303 -9 581 176 0 10 chr1 72096561 72096663 -210097001 + AluSg SINE Alu 1 101 -209 1983 140 7 0 chr1 72096764 72097043 -210096621 - AluSg SINE Alu -28 282 2 402 224 43 184 chr1 72097053 72097379 -210096285 + L2 LINE L2 3033 3312 -1 601 330 109 24 chr1 72098170 72098648 -210095016 + L2 LINE L2 2542 3071 -201 988 263 127 25 chr1 72098700 72099133 -210094531 + MLT1G LTR MaLR 1 477 -113 1987 205 85 66 chr1 72099139 72099773 -210093891 + MLT1E1 LTR MaLR 9 654 0 518 200 33 17 chr1 72099773 72099890 -210093774 + MLT1G LTR MaLR 472 590 0 278 278 43 56 chr1 72099890 72100052 -210093612 - L2 LINE L2 -71 3242 3083 183 274 32 0 chr1 72100527 72100589 -210093075 - L2 LINE L2 -211 3061 2998 425 277 102 0 chr1 72100638 72100804 -210092860 - MER117 DNA MER1_type 0 197 15 493 303 41 37 chr1 72101017 72101235 -210092429 + MIR SINE MIR 32 250 -12 22 0 0 0 chr1 72101237 72101259 -210092405 + AT_rich Low_complexity Low_complexity 1 22 0 377 252 84 42 chr1 72101607 72101667 -210091997 - L2 LINE L2 -1 3312 3256 987 179 27 54 chr1 72101667 72101891 -210091773 - MER20 DNA MER1_type -1 218 1 377 252 84 42 chr1 72101891 72101973 -210091691 - L2 LINE L2 -57 3256 3164 21 0 0 0 chr1 72102523 72102544 -210091120 + AT_rich Low_complexity Low_complexity 1 21 0 261 263 0 0 chr1 72103163 72103220 -210090444 + MIR SINE MIR 203 259 -3 303 242 168 11 chr1 72103510 72103605 -210090059 - MIR SINE MIR -12 250 141 247 351 0 0 chr1 72103614 72103691 -210089973 + L2 LINE L2 3196 3272 0 228 313 38 38 chr1 72103696 72103776 -210089888 - MIR SINE MIR -163 99 20 1595 191 43 0 chr1 72103786 72104111 -210089553 - MER58B DNA MER1_type 0 341 3 389 263 68 17 chr1 72105090 72105208 -210088456 - L2 LINE L2 -8 3264 3141 717 248 24 39 chr1 72105254 72105460 -210088204 - MIR SINE MIR -28 234 32 316 330 0 26 chr1 72105646 72105816 -210087848 - L2 LINE L2 -300 2972 2815 316 329 0 0 chr1 72105864 72105949 -210087715 - MIR SINE MIR -106 156 72 359 338 58 86 chr1 72105959 72105984 -210087680 - L2 LINE L2 0 3272 3248 1973 155 0 16 chr1 72105984 72106301 -210087363 + AluJo SINE Alu 1 312 0 359 338 58 86 chr1 72106301 72106743 -210086921 - L2 LINE L2 -24 3248 2818 299 220 0 0 chr1 72107058 72107108 -210086556 - L2 LINE L2 -5 3267 3218 211 313 0 0 chr1 72107833 72107900 -210085764 - MIR SINE MIR -10 252 186 1352 230 22 46 chr1 72108312 72108729 -210084935 - MLT1C LTR MaLR -2 465 59 185 105 0 26 chr1 72108932 72108970 -210084694 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 198 320 0 0 chr1 72108995 72109045 -210084619 + MIR SINE MIR 185 234 -28 376 238 146 33 chr1 72109085 72109236 -210084428 - MIR SINE MIR -93 169 2 2082 103 18 0 chr1 72109926 72110208 -210083456 - AluJb SINE Alu -24 288 2 291 311 12 6 chr1 72111325 72111489 -210082175 - MIR SINE MIR -3 259 3 360 207 200 15 chr1 72111514 72111649 -210082015 + MER112 DNA MER1_type 81 240 -20 649 290 29 5 chr1 72111901 72112108 -210081556 - L3 LINE CR1 -180 1397 1186 314 287 15 37 chr1 72112127 72112263 -210081401 - MLT1K LTR MaLR -36 552 420 363 286 62 43 chr1 72112336 72112497 -210081167 - MLT1K LTR MaLR -285 303 140 350 332 171 18 chr1 72112790 72113007 -210080657 + L2 LINE L2 3019 3268 -4 459 107 0 27 chr1 72113484 72113559 -210080105 + L1PA7 LINE L1 6074 6146 -8 2189 23 8 8 chr1 72113665 72113930 -210079734 + L1PA4 LINE L1 5888 6152 -3 304 380 19 6 chr1 72114773 72114931 -210078733 + MIR SINE MIR 97 256 -6 245 47 0 0 chr1 72114992 72115035 -210078629 + Alu SINE Alu 259 301 -2 1987 117 71 0 chr1 72115345 72115627 -210078037 - AluSx SINE Alu -10 302 1 1009 223 25 0 chr1 72115676 72115878 -210077786 + MIR SINE MIR 54 260 -2 221 250 29 15 chr1 72115900 72115968 -210077696 + MIR SINE MIR 194 262 0 2190 125 0 0 chr1 72116841 72117136 -210076528 - AluSx SINE Alu -17 295 1 2296 125 0 0 chr1 72117773 72118084 -210075580 - AluSx SINE Alu -1 311 1 260 196 0 0 chr1 72118130 72118176 -210075488 + MIR SINE MIR 201 246 -16 288 270 0 0 chr1 72118177 72118303 -210075361 + (CTA)n Simple_repeat Simple_repeat 1 126 0 1493 188 183 23 chr1 72118383 72118820 -210074844 + Charlie4a DNA MER1_type 2 508 0 491 287 55 12 chr1 72118986 72119150 -210074514 + MIR SINE MIR 43 213 -49 5346 195 71 27 chr1 72119166 72120558 -210073106 - Charlie1a DNA MER1_type -1 1454 2 576 153 0 89 chr1 72120583 72120707 -210072957 + Tigger3(Golem) DNA MER2_type 30 142 -2887 1417 124 86 0 chr1 72120713 72120946 -210072718 + Tigger3(Golem) DNA MER2_type 2777 3029 0 322 246 29 0 chr1 72121178 72121247 -210072417 + L2 LINE L2 3202 3272 0 1728 124 105 0 chr1 72121569 72121835 -210071829 + AluSx SINE Alu 1 294 -18 2191 125 3 3 chr1 72122000 72122312 -210071352 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 72122376 72122401 -210071263 + AT_rich Low_complexity Low_complexity 1 25 0 2129 123 0 0 chr1 72122601 72122903 -210070761 + AluSx SINE Alu 1 302 -10 213 250 0 21 chr1 72123540 72123588 -210070076 + MIR SINE MIR 32 78 -130 190 136 45 0 chr1 72124074 72124118 -210069546 + GA-rich Low_complexity Low_complexity 3 48 0 410 224 50 101 chr1 72124256 72124475 -210069189 + L2 LINE L2 3052 3259 -54 207 333 32 11 chr1 72125191 72125284 -210068380 + MIR SINE MIR 50 144 -118 1287 199 76 72 chr1 72125357 72125437 -210068227 + MER39 LTR ERV1 259 337 -370 2271 120 0 0 chr1 72125437 72125746 -210067918 + AluSx SINE Alu 1 309 -3 1287 199 76 72 chr1 72125746 72125998 -210067666 + MER39 LTR ERV1 337 596 -111 15438 106 36 8 chr1 72125998 72128350 -210065314 - Tigger1 DNA MER2_type 0 2418 1 1287 199 76 72 chr1 72128350 72128463 -210065201 + MER39 LTR ERV1 596 707 0 651 188 51 14 chr1 72128639 72128957 -210064707 + FLAM_C SINE Alu 1 143 0 282 349 61 8 chr1 72129051 72129183 -210064481 + MIR SINE MIR 124 262 0 2196 82 10 3 chr1 72129205 72129498 -210064166 + AluSp SINE Alu 6 300 -13 183 80 0 0 chr1 72129499 72129524 -210064140 + (TA)n Simple_repeat Simple_repeat 2 26 0 357 266 65 29 chr1 72129898 72130037 -210063627 + MLT1A2 LTR MaLR 3 146 -228 1905 84 13 121 chr1 72130045 72130424 -210063240 + L1PB1 LINE L1 5717 6054 -97 896 163 0 7 chr1 72130490 72130637 -210063027 + FRAM SINE Alu 18 163 -13 996 193 38 14 chr1 72130648 72130860 -210062804 + MLT1A2 LTR MaLR 158 374 0 2312 68 17 0 chr1 72131276 72131400 -210062264 + AluY SINE Alu 1 121 -190 198 0 0 0 chr1 72131400 72131422 -210062242 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2312 68 17 0 chr1 72131422 72131590 -210062074 + AluY SINE Alu 121 298 -13 938 166 14 3 chr1 72131725 72132005 -210061659 + MER33 DNA MER1_type 1 363 0 758 276 90 31 chr1 72132062 72132352 -210061312 + MER102b DNA MER1_type 26 332 -9 326 279 196 28 chr1 72132427 72132606 -210061058 + MIR SINE MIR 54 262 0 2762 141 12 0 chr1 72133086 72133570 -210060094 + L1MA8 LINE L1 5254 5743 -548 383 111 0 42 chr1 72133624 72133696 -210059968 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 375 273 0 0 chr1 72133721 72133949 -210059715 + (TA)n Simple_repeat Simple_repeat 1 228 0 2380 135 42 36 chr1 72134017 72134521 -210059143 + L1MA8 LINE L1 5785 6291 0 2402 93 0 10 chr1 72135324 72135637 -210058027 + AluSg SINE Alu 1 310 0 21 57 0 0 chr1 72135923 72135958 -210057706 + AT_rich Low_complexity Low_complexity 1 35 0 2300 112 0 7 chr1 72136182 72136486 -210057178 - AluSc SINE Alu -7 302 1 1103 241 73 40 chr1 72136550 72136989 -210056675 - MER39 LTR ERV1 -43 664 2 22 35 0 0 chr1 72136998 72137027 -210056637 + AT_rich Low_complexity Low_complexity 1 29 0 1053 189 11 0 chr1 72137069 72137254 -210056410 + MER5A DNA MER1_type 3 189 0 477 252 84 38 chr1 72137259 72137604 -210056060 + L1MC5 LINE L1 7347 7707 -254 22 56 0 0 chr1 72137652 72137688 -210055976 + AT_rich Low_complexity Low_complexity 1 36 0 302 0 0 26 chr1 72137880 72137919 -210055745 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 498 234 0 0 chr1 72137926 72138020 -210055644 - 5S rRNA rRNA 0 121 28 242 247 89 125 chr1 72138023 72138050 -210055614 + L1ME4a LINE L1 5677 5703 -418 2185 90 11 0 chr1 72138050 72138398 -210055266 + AluSx SINE Alu 1 351 0 242 247 89 125 chr1 72138398 72138786 -210054878 + L1ME4a LINE L1 5703 6078 -43 1220 163 112 54 chr1 72138845 72139140 -210054524 + AluJo SINE Alu 1 312 0 490 295 52 21 chr1 72139173 72139366 -210054298 + L3 LINE CR1 1367 1565 -12 191 265 82 0 chr1 72139380 72139429 -210054235 - L2 LINE L2 -71 3201 3149 889 242 96 25 chr1 72140097 72140411 -210053253 - MLT1J1 LTR MaLR -71 375 40 258 53 0 0 chr1 72140966 72141004 -210052660 - HY3 scRNA scRNA -1 100 63 577 261 6 32 chr1 72141122 72141279 -210052385 + MIR SINE MIR 110 262 0 239 290 0 16 chr1 72141445 72141507 -210052157 - MER5A DNA MER1_type -34 155 95 282 232 72 14 chr1 72141528 72141597 -210052067 + MER91C DNA MER1_type 33 105 -35 232 342 26 26 chr1 72141583 72141697 -210051967 - MER5A DNA MER1_type -75 114 1 * 467 354 66 9 chr1 72142345 72142571 -210051093 + L3 LINE CR1 1268 1506 -71 * 483 307 151 38 chr1 72142548 72142893 -210050771 + L2 LINE L2 2930 3313 0 255 261 14 14 chr1 72143493 72143562 -210050102 - L2 LINE L2 -3 3269 3201 1268 283 94 24 chr1 72144338 72145011 -210048653 - L2 LINE L2 -61 3252 2526 478 277 36 87 chr1 72145243 72145294 -210048370 - MIR SINE MIR -67 141 89 2281 106 0 0 chr1 72145294 72145595 -210048069 - AluSx SINE Alu -11 301 1 478 277 36 87 chr1 72145595 72145738 -210047926 - MIR SINE MIR -119 89 7 2328 87 3 3 chr1 72146165 72146463 -210047201 + AluSc SINE Alu 1 298 -11 249 287 64 11 chr1 72146560 72146654 -210047010 - L2 LINE L2 -24 3289 3191 683 238 111 17 chr1 72146756 72146928 -210046736 - MIR SINE MIR -65 197 10 756 186 87 6 chr1 72146930 72147091 -210046573 - MER69A DNA AcHobo -2 175 2 198 340 0 0 chr1 72147274 72147321 -210046343 - L2 LINE L2 -10 3262 3216 1975 111 0 38 chr1 72147348 72147636 -210046028 + AluSx SINE Alu 21 297 -15 256 262 8 52 chr1 72147804 72147932 -210045732 - MIR SINE MIR -94 168 7 2088 180 97 32 chr1 72148389 72148862 -210044802 - MLT1D LTR MaLR 0 505 2 365 173 49 12 chr1 72149156 72149237 -210044427 - MIR SINE MIR -82 180 97 770 286 78 0 chr1 72149349 72149566 -210044098 + MIR SINE MIR 29 262 0 22 35 0 0 chr1 72152232 72152261 -210041403 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr1 72153392 72153419 -210040245 + (CA)n Simple_repeat Simple_repeat 2 28 0 227 238 75 25 chr1 72153786 72153866 -210039798 + MIR SINE MIR 144 227 -35 1043 242 169 8 chr1 72154398 72154770 -210038894 + L2 LINE L2 2274 2705 -609 2254 113 3 0 chr1 72154980 72155290 -210038374 - AluSq SINE Alu -2 311 1 334 292 123 62 chr1 72155341 72155639 -210038025 - MLT1J LTR MaLR -2 509 230 306 0 0 0 chr1 72155639 72155673 -210037991 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1841 167 0 0 chr1 72155675 72155956 -210037708 - AluJb SINE Alu -29 283 3 334 292 123 62 chr1 72155956 72156134 -210037530 - MLT1J LTR MaLR -281 230 1 325 228 46 87 chr1 72156170 72156389 -210037275 - L1ME3A LINE L1 -234 5936 5727 466 313 100 43 chr1 72156424 72156635 -210037029 + L2 LINE L2 2701 2934 -379 554 193 187 7 chr1 72156635 72156785 -210036879 - MER69A DNA AcHobo 0 177 1 466 313 100 43 chr1 72156785 72156873 -210036791 + L2 LINE L2 2934 3016 -297 1014 252 134 42 chr1 72156873 72157329 -210036335 + MLT1J LTR MaLR 3 500 -11 861 261 19 84 chr1 72157336 72157431 -210036233 + L2 LINE L2 3012 3112 -201 3633 137 6 2 chr1 72157431 72157956 -210035708 + MER1A DNA MER1_type 1 527 0 861 261 19 84 chr1 72157956 72158182 -210035482 + L2 LINE L2 3112 3312 -1 266 301 65 32 chr1 72158216 72158339 -210035325 + L2 LINE L2 3187 3313 0 5950 89 16 16 chr1 72158614 72158853 -210034811 - L1MA2 LINE L1 0 6304 6066 2322 95 0 0 chr1 72158853 72159147 -210034517 - AluSp SINE Alu -19 294 1 5950 89 16 16 chr1 72159147 72159782 -210033882 - L1MA2 LINE L1 -237 6067 5430 389 250 11 0 chr1 72159782 72159874 -210033790 - MIR SINE MIR -17 245 153 968 213 83 45 chr1 72159878 72160192 -210033472 - MER46C DNA MER2_type -4 334 9 205 306 63 54 chr1 72160218 72160329 -210033335 - MIR SINE MIR -146 116 5 251 318 99 26 chr1 72160581 72160732 -210032932 - L2 LINE L2 0 3313 3152 2089 127 7 0 chr1 72162618 72162917 -210030747 + AluSx SINE Alu 1 301 -11 1291 256 16 0 chr1 72163269 72163578 -210030086 + L2 LINE L2 1396 1709 -1605 888 249 51 121 chr1 72163586 72164115 -210029549 + L1MC4 LINE L1 7245 7693 -349 1926 165 0 3 chr1 72164115 72164406 -210029258 + AluJo SINE Alu 1 290 -22 888 249 51 121 chr1 72164406 72164734 -210028930 + L1MC4 LINE L1 7693 8042 0 1872 265 64 12 chr1 72164754 72165244 -210028420 + L2 LINE L2 1717 2244 -1070 2328 57 0 3 chr1 72165244 72165553 -210028111 + AluY SINE Alu 1 308 0 1872 265 64 12 chr1 72165553 72165643 -210028021 + L2 LINE L2 2244 2328 -986 3958 169 14 70 chr1 72165716 72166413 -210027251 + L1MB7 LINE L1 4923 5658 -526 6310 80 34 3 chr1 72166413 72167334 -210026330 + L1PA7 LINE L1 5207 6154 0 3958 169 14 70 chr1 72167334 72167830 -210025834 + L1MB7 LINE L1 5658 6032 -152 941 100 0 15 chr1 72167830 72167960 -210025704 + FLAM_C SINE Alu 1 128 -5 3958 169 14 70 chr1 72167960 72168018 -210025646 + L1MB7 LINE L1 6032 6092 -92 2291 99 0 0 chr1 72168021 72168315 -210025349 - AluSc SINE Alu -11 298 5 299 135 0 0 chr1 72168372 72168424 -210025240 + L1MB7 LINE L1 6102 6153 -31 1368 168 48 4 chr1 72168424 72168692 -210024972 + Tigger3(Golem) DNA MER2_type 2 281 -2748 320 222 0 93 chr1 72168699 72168807 -210024857 + L1MA10 LINE L1 6176 6273 -61 1637 145 0 0 chr1 72168823 72169050 -210024614 + AluSx SINE Alu 1 227 -85 843 131 16 0 chr1 72169050 72169172 -210024492 + AluSg/x SINE Alu 170 293 -19 243 210 0 0 chr1 72169182 72169244 -210024420 + L1MA10 LINE L1 6264 6325 -9 265 228 11 76 chr1 72171027 72171119 -210022545 + MIR SINE MIR 106 191 -71 23 33 0 0 chr1 72171155 72171185 -210022479 + AT_rich Low_complexity Low_complexity 1 30 0 1894 154 14 0 chr1 72171303 72171589 -210022075 - AluJb SINE Alu -22 290 1 206 167 24 0 chr1 72171636 72171678 -210021986 + MIR SINE MIR 70 112 -150 3360 122 13 70 chr1 72171785 72172391 -210021273 + L1MA5A LINE L1 5283 5815 -380 1909 165 10 0 chr1 72172391 72172688 -210020976 + AluSx SINE Alu 1 300 -12 3360 122 13 70 chr1 72172688 72172878 -210020786 + L1MA5A LINE L1 5815 6014 -181 1508 108 21 4 chr1 72172979 72173220 -210020444 + L1MA5A LINE L1 6051 6295 -2 215 250 19 19 chr1 72173271 72173323 -210020341 - L2 LINE L2 -7 3306 3255 2304 68 14 0 chr1 72173706 72174026 -210019638 + AluSp SINE Alu 1 324 0 506 290 98 21 chr1 72175550 72175743 -210017921 + MIR SINE MIR 53 260 -2 1287 207 114 129 chr1 72175778 72176038 -210017626 + L1M4 LINE L1 3251 3513 -2633 868 144 8 0 chr1 72176038 72176170 -210017494 + FLAM_C SINE Alu 1 133 0 1287 207 114 129 chr1 72176170 72176244 -210017420 + L1M4 LINE L1 3513 3587 -2559 2189 132 0 0 chr1 72176244 72176547 -210017117 + AluSx SINE Alu 1 303 -9 1287 207 114 129 chr1 72176547 72176758 -210016906 + L1M4 LINE L1 3587 3800 -2346 2091 123 0 0 chr1 72176758 72177050 -210016614 + AluSx SINE Alu 1 292 -20 1287 207 114 129 chr1 72177050 72177433 -210016231 + L1M4 LINE L1 3800 4167 -1979 1880 124 37 0 chr1 72177484 72177791 -210015873 - AluY SINE Alu 0 317 1 22 0 0 0 chr1 72177791 72177813 -210015851 + AT_rich Low_complexity Low_complexity 1 22 0 1214 168 46 15 chr1 72177989 72178251 -210015413 + MLT1A1 LTR MaLR 10 279 -86 1003 208 140 81 chr1 72178844 72178942 -210014722 - MLT1G1 LTR MaLR 0 530 439 2365 56 3 88 chr1 72178942 72179284 -210014380 - AluSp SINE Alu 0 313 1 1003 208 140 81 chr1 72179284 72179650 -210014014 - MLT1G1 LTR MaLR -91 439 117 2452 82 0 0 chr1 72179650 72179943 -210013721 + AluSc SINE Alu 1 293 -16 1003 208 140 81 chr1 72179943 72180068 -210013596 - MLT1G1 LTR MaLR -413 117 1 253 336 23 0 chr1 72180686 72180814 -210012850 + CT-rich Low_complexity Low_complexity 3 133 0 292 294 109 76 chr1 72181160 72181236 -210012428 + L2 LINE L2 1710 1782 -1532 1993 125 14 0 chr1 72181236 72181550 -210012114 + AluSx SINE Alu 1 318 0 292 294 109 76 chr1 72181550 72181748 -210011916 + L2 LINE L2 1782 1994 -1320 332 214 61 38 chr1 72181800 72181931 -210011733 - L1M4 LINE L1 -2940 3206 3073 1149 113 32 5 chr1 72181970 72182192 -210011472 - L1MB3 LINE L1 -31 6152 5923 405 278 33 25 chr1 72182168 72182413 -210011251 - L1M4 LINE L1 -3090 3056 2810 * 726 255 86 51 chr1 72182541 72182914 -210010750 - MLT1L LTR MaLR -33 582 197 986 157 0 0 chr1 72183141 72183300 -210010364 + L1MC/D LINE L1 5467 5625 -708 3505 226 18 2 chr1 72183313 72184223 -210009441 - L1M4 LINE L1 -758 5388 4465 21 36 0 0 chr1 72184230 72184258 -210009406 + AT_rich Low_complexity Low_complexity 1 28 0 4260 184 39 24 chr1 72184373 72184537 -210009127 - L1MB2 LINE L1 -36 6135 5975 558 64 0 0 chr1 72184537 72184615 -210009049 - L1PA12 LINE L1 0 6168 6091 4260 184 39 24 chr1 72184615 72184885 -210008779 - L1MB2 LINE L1 -196 5975 5711 928 80 29 15 chr1 72184885 72185022 -210008642 + MER85 DNA T2_type 1 139 0 4260 184 39 24 chr1 72185022 72185087 -210008577 - L1MB2 LINE L1 -460 5711 5648 1853 141 42 48 chr1 72185087 72185159 -210008505 - THE1C LTR MaLR 0 375 304 2144 93 38 0 chr1 72185159 72185450 -210008214 + AluSg SINE Alu 1 302 -8 1853 141 42 48 chr1 72185450 72185754 -210007910 - THE1C LTR MaLR -71 304 1 4260 184 39 24 chr1 72185754 72186350 -210007314 - L1MB2 LINE L1 -523 5648 5063 2390 88 3 0 chr1 72186350 72186644 -210007020 - AluSp SINE Alu -18 295 1 4260 184 39 24 chr1 72186644 72187433 -210006231 - L1MB2 LINE L1 -1108 5063 4217 305 331 80 41 chr1 72187497 72188083 -210005581 - L1MEd LINE L1 -5263 856 248 1992 149 0 0 chr1 72188090 72188391 -210005273 + AluSx SINE Alu 3 303 -9 500 133 0 0 chr1 72188909 72188984 -210004680 + AluSx SINE Alu 1 75 -238 507 105 31 4 chr1 72188984 72189080 -210004584 - L1 LINE L1 -1803 4343 4252 1634 117 9 0 chr1 72189082 72189312 -210004352 + AluSx SINE Alu 77 308 -2 938 230 61 38 chr1 72189316 72189678 -210003986 + MLT2A2 LTR ERVL 104 489 -65 388 182 36 45 chr1 72240078 72240188 -209953476 + 7SK RNA RNA 1 109 -84 202 339 127 0 chr1 72240594 72240712 -209952952 + L2 LINE L2 2196 2328 -986 188 286 0 0 chr1 72240715 72240757 -209952907 - L2 LINE L2 -15 3298 3257 244 351 54 20 chr1 72240845 72240993 -209952671 - MIR SINE MIR -20 242 90 235 232 0 49 chr1 72242179 72242261 -209951403 - MER116 DNA Mariner 0 80 3 559 242 0 16 chr1 72242261 72242385 -209951279 + FLAM_A SINE Alu 1 122 -11 23 0 0 0 chr1 72242385 72242408 -209951256 + AT_rich Low_complexity Low_complexity 1 23 0 301 235 71 0 chr1 72243473 72243501 -209950163 + L2 LINE L2 3182 3207 -65 1421 158 31 141 chr1 72243501 72243919 -209949745 - MLT1A2 LTR MaLR -1 373 2 301 235 71 0 chr1 72243919 72243975 -209949689 + L2 LINE L2 3207 3272 0 503 115 115 48 chr1 72244155 72244170 -209949494 - FLAM_C SINE Alu -169 143 130 2175 127 3 10 chr1 72244170 72244478 -209949186 - AluSx SINE Alu -6 306 1 503 115 115 48 chr1 72244478 72244566 -209949098 - FLAM_C SINE Alu -182 130 33 675 261 47 47 chr1 72245452 72245705 -209947959 - MIR SINE MIR 0 262 10 2014 147 3 10 chr1 72245741 72246055 -209947609 + AluSx SINE Alu 1 312 0 2012 252 47 30 chr1 72247107 72248034 -209945630 + L1MEc LINE L1 257 1280 -5283 287 218 5 28 chr1 72248029 72248146 -209945518 + L1MEc LINE L1 1199 1433 -4993 * 262 252 9 35 chr1 72248250 72248365 -209945299 + L1MEc LINE L1 1267 1378 -5006 334 203 14 27 chr1 72248460 72248534 -209945130 + Tigger2 DNA MER2_type 1 73 -2645 877 215 0 6 chr1 72248567 72248744 -209944920 - MER8 DNA MER2_type -62 177 2 2146 88 58 3 chr1 72248813 72249108 -209944556 - AluSp SINE Alu -2 311 1 194 276 224 13 chr1 72249562 72249638 -209944026 + L3b LINE CR1 1351 1442 -141 1560 161 3 77 chr1 72249670 72249980 -209943684 - AluJb SINE Alu -25 287 1 1471 178 44 40 chr1 72250406 72250704 -209942960 - AluJb SINE Alu -13 299 1 2072 131 0 3 chr1 72250770 72251081 -209942583 + AluSx SINE Alu 1 310 0 520 352 96 0 chr1 72251577 72251796 -209941868 + L3 LINE CR1 1308 1547 -30 1789 99 4 0 chr1 72251803 72252036 -209941628 + AluSx SINE Alu 1 234 -78 1504 185 34 57 chr1 72252253 72252636 -209941028 + MLT1B LTR MaLR 1 374 -16 21 0 0 0 chr1 72253331 72253352 -209940312 + AT_rich Low_complexity Low_complexity 1 21 0 205 439 56 0 chr1 72254321 72254428 -209939236 + L2 LINE L2 3117 3229 -43 2304 104 3 0 chr1 72255123 72255420 -209938244 + AluSx SINE Alu 1 298 -14 541 158 10 30 chr1 72255488 72255589 -209938075 - FRAM SINE Alu -13 163 65 598 239 50 35 chr1 72255959 72256340 -209937324 + MLT1J LTR MaLR 29 459 -52 671 226 81 68 chr1 72256429 72256664 -209937000 - MIR SINE MIR -24 238 1 2034 141 3 7 chr1 72257032 72257331 -209936333 + AluJb SINE Alu 1 298 -14 757 203 0 0 chr1 72257420 72257548 -209936116 + MER3 DNA MER1_type 2 129 -80 209 56 0 28 chr1 72257550 72257586 -209936078 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 204 196 0 39 chr1 72257809 72257860 -209935804 + A-rich Low_complexity Low_complexity 2 50 0 656 132 22 0 chr1 72259156 72259247 -209934417 - AluJ/FLAM SINE Alu -219 93 1 579 275 120 18 chr1 72259414 72259748 -209933916 - L1MC4a LINE L1 -1866 5942 5575 372 302 166 0 chr1 72259865 72260034 -209933630 + MLT1K LTR MaLR 47 243 -345 427 253 0 10 chr1 72260226 72260325 -209933339 + MLT1K LTR MaLR 482 579 -9 1853 155 7 14 chr1 72260391 72260688 -209932976 + AluJo SINE Alu 1 295 -17 1594 192 17 13 chr1 72261328 72261630 -209932034 + AluJo SINE Alu 1 303 -9 2077 117 0 49 chr1 72261639 72261947 -209931717 + AluSx SINE Alu 1 293 -19 451 214 19 0 chr1 72262266 72262369 -209931295 - MIR SINE MIR -61 201 97 1830 164 0 11 chr1 72262371 72262657 -209931007 + AluJb SINE Alu 3 285 -27 930 141 0 0 chr1 72262657 72262813 -209930851 + (GGA)n Simple_repeat Simple_repeat 3 158 0 302 238 168 50 chr1 72262823 72262924 -209930740 - MIR SINE MIR -128 134 22 263 289 21 31 chr1 72263024 72263121 -209930543 + L2 LINE L2 3218 3313 0 308 333 46 20 chr1 72263242 72263395 -209930269 + MIR3 SINE MIR 6 162 -46 2472 63 7 0 chr1 72263525 72263824 -209929840 + AluSp SINE Alu 1 301 -12 185 300 0 33 chr1 72265744 72265804 -209927860 + MIR SINE MIR 72 130 -78 1943 125 17 0 chr1 72265808 72266119 -209927545 - AluSx SINE Alu 0 312 5 2125 124 0 13 chr1 72266142 72266456 -209927208 - AluSx SINE Alu -2 310 1 498 98 0 0 chr1 72266693 72266754 -209926910 - Alu SINE Alu -256 62 2 193 297 109 39 chr1 72266759 72266887 -209926777 + MIR SINE MIR 126 262 0 * 196 310 70 0 chr1 72266877 72266948 -209926716 - MIR SINE MIR -105 157 82 1946 110 96 3 chr1 72267007 72267289 -209926375 + AluSx SINE Alu 1 308 -4 2390 79 0 0 chr1 72267793 72268083 -209925581 + AluSc SINE Alu 1 290 -19 248 297 0 14 chr1 72268416 72268490 -209925174 - Charlie4 DNA MER1_type -6 1955 1883 264 122 0 0 chr1 72268495 72268536 -209925128 + (TA)n Simple_repeat Simple_repeat 1 41 0 360 290 72 22 chr1 72268677 72268815 -209924849 - MIR3 SINE MIR -62 146 2 717 220 8 0 chr1 72269107 72269239 -209924425 - FLAM_C SINE Alu -9 134 2 269 159 23 0 chr1 72269352 72269396 -209924268 + L2 LINE L2 3224 3268 -4 1238 186 18 9 chr1 72269467 72269687 -209923977 + AluJo SINE Alu 86 307 -5 22 0 0 0 chr1 72272015 72272037 -209921627 + AT_rich Low_complexity Low_complexity 1 22 0 788 282 79 17 chr1 72273563 72273804 -209919860 + MIR SINE MIR 5 260 -2 294 316 21 0 chr1 72273809 72273904 -209919760 + CT-rich Low_complexity Low_complexity 3 99 0 876 138 0 14 chr1 72274451 72274589 -209919075 + FLAM_C SINE Alu 1 136 -7 198 264 19 0 chr1 72274750 72274803 -209918861 + MIR SINE MIR 68 121 -141 22 35 0 0 chr1 72275429 72275458 -209918206 + AT_rich Low_complexity Low_complexity 1 29 0 2267 112 10 0 chr1 72275468 72275764 -209917900 + AluSg SINE Alu 1 299 -11 856 151 0 8 chr1 72275775 72275894 -209917770 + FLAM_A SINE Alu 3 120 -13 2656 194 37 46 chr1 72275936 72276483 -209917181 - MLT1F LTR MaLR 0 542 1 473 191 0 0 chr1 72277122 72277206 -209916458 + MIR SINE MIR 44 127 -81 199 91 26 91 chr1 72277903 72277980 -209915684 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 327 278 11 0 chr1 72278051 72278141 -209915523 + L2 LINE L2 3182 3272 0 2396 53 4 0 chr1 72279106 72279428 -209914236 + AluY SINE Alu 3 325 0 1962 100 0 0 chr1 72279486 72279736 -209913928 + AluSg SINE Alu 2 251 -59 225 132 0 0 chr1 72279736 72279774 -209913890 + (A)n Simple_repeat Simple_repeat 1 38 0 1906 109 98 3 chr1 72279905 72280190 -209913474 + AluSx SINE Alu 1 312 0 2573 61 0 10 chr1 72280311 72280623 -209913041 - AluY SINE Alu -2 309 1 1994 139 14 0 chr1 72280749 72281036 -209912628 + AluSx SINE Alu 1 291 -21 2346 92 0 0 chr1 72281108 72281400 -209912264 - AluY SINE Alu -19 292 1 4739 216 30 126 chr1 72281435 72284121 -209909543 + L1M3e LINE L1 1 2445 -4592 2272 104 131 8 chr1 72284132 72284498 -209909166 - MSTA LTR MaLR -17 411 1 375 267 0 0 chr1 72284498 72284584 -209909080 + L1M3e LINE L1 2426 2511 -4516 2250 136 0 0 chr1 72284590 72284899 -209908765 + AluSx SINE Alu 3 311 -1 1180 149 0 0 chr1 72284899 72285073 -209908591 + AluSg/x SINE Alu 134 307 -5 2686 251 90 37 chr1 72285081 72286179 -209907485 + L1MEc LINE L1 2640 3670 -3895 2167 102 7 3 chr1 72286190 72286494 -209907170 + AluSx SINE Alu 1 305 0 4904 135 25 7 chr1 72286497 72287319 -209906345 + L1 LINE L1 3959 4795 -1351 31 0 0 0 chr1 72287377 72287408 -209906256 + AT_rich Low_complexity Low_complexity 1 31 0 230 292 28 14 chr1 72287861 72287933 -209905731 - MER117 DNA MER1_type -56 141 69 2013 123 32 29 chr1 72287933 72288241 -209905423 + AluSx SINE Alu 1 309 -3 2134 93 21 0 chr1 72288336 72288625 -209905039 + AluSg SINE Alu 1 295 -15 2277 71 24 14 chr1 72288625 72288920 -209904744 + AluY SINE Alu 1 298 -13 306 329 145 7 chr1 72288922 72289116 -209904548 + MIR SINE MIR 30 255 -7 598 301 87 35 chr1 72289250 72289318 -209904346 + L2 LINE L2 3001 3064 -249 1646 164 7 0 chr1 72289318 72289620 -209904044 + AluJo SINE Alu 12 315 0 598 301 87 35 chr1 72289620 72289836 -209903828 + L2 LINE L2 3064 3301 -12 2279 105 0 0 chr1 72289836 72290131 -209903533 + AluSg SINE Alu 1 295 -15 972 228 81 127 chr1 72290144 72290639 -209903025 - Charlie7 DNA MER1_type -1939 673 202 264 149 0 0 chr1 72291467 72291514 -209902150 + (CA)n Simple_repeat Simple_repeat 2 48 0 739 274 63 23 chr1 72291600 72291817 -209901847 - MARNA DNA Mariner -72 514 280 1828 101 72 14 chr1 72291817 72292095 -209901569 + AluSc SINE Alu 1 294 -15 739 274 63 23 chr1 72292095 72292176 -209901488 - MARNA DNA Mariner -306 280 204 201 176 0 0 chr1 72292428 72292462 -209901202 + (TA)n Simple_repeat Simple_repeat 1 34 0 2463 55 3 32 chr1 72292544 72292854 -209900810 - AluY SINE Alu -10 301 1 22 56 0 0 chr1 72293337 72293373 -209900291 + AT_rich Low_complexity Low_complexity 1 36 0 366 192 172 0 chr1 72293408 72293507 -209900157 - L1MA9 LINE L1 -50 6262 6147 2340 93 0 0 chr1 72293683 72293974 -209899690 + AluY SINE Alu 14 304 -7 2023 122 3 3 chr1 72293981 72294268 -209899396 + AluSx SINE Alu 1 287 -25 217 259 0 0 chr1 72294269 72294323 -209899341 + (TA)n Simple_repeat Simple_repeat 1 54 0 1448 142 12 32 chr1 72294326 72294573 -209899091 - MER2 DNA MER2_type -90 255 14 2238 114 0 0 chr1 72294629 72294918 -209898746 - AluSx SINE Alu -23 289 1 205 342 38 0 chr1 72294958 72295037 -209898627 + L2 LINE L2 3137 3218 -54 1100 75 0 0 chr1 72295168 72295301 -209898363 - AluSq/x SINE Alu -180 133 1 545 275 124 5 chr1 72295359 72295552 -209898112 + MIR SINE MIR 47 262 0 558 240 0 8 chr1 72295799 72295920 -209897744 - L2 LINE L2 -4 3309 3190 2384 95 0 0 chr1 72296029 72296325 -209897339 + AluSg SINE Alu 1 296 -14 2222 79 3 57 chr1 72296333 72296648 -209897016 + AluSp SINE Alu 1 298 -15 2299 109 0 0 chr1 72296786 72297097 -209896567 + AluY SINE Alu 1 311 0 2243 88 3 0 chr1 72297119 72297434 -209896230 - AluSp SINE Alu 0 316 1 723 106 0 19 chr1 72297459 72297563 -209896101 + AluSg/x SINE Alu 207 308 -1 1344 150 26 0 chr1 72297701 72297927 -209895737 + L1MC1 LINE L1 5940 6171 -162 562 180 0 0 chr1 72297927 72298016 -209895648 - Tigger7 DNA MER2_type 0 2487 2399 * 1292 104 6 0 chr1 72298014 72298196 -209895468 - Tigger7 DNA MER2_type -1983 504 322 886 198 6 0 chr1 72298196 72298363 -209895301 - FRAM SINE Alu -8 168 1 1532 182 52 31 chr1 72298364 72298655 -209895009 - Tigger7 DNA MER2_type -405 328 32 1169 120 0 18 chr1 72298669 72298836 -209894828 + L1MC1 LINE L1 6168 6331 -2 2190 128 3 3 chr1 72298850 72299162 -209894502 - AluSx SINE Alu 0 312 1 2117 84 49 0 chr1 72299336 72299623 -209894041 - AluY SINE Alu -10 301 1 670 189 118 84 chr1 72299636 72299874 -209893790 - MER112 DNA MER1_type -7 253 8 2456 89 3 16 chr1 72300021 72300337 -209893327 - AluSp SINE Alu -1 312 1 443 324 112 6 chr1 72302009 72302188 -209891476 + MIR SINE MIR 9 206 -56 274 331 0 33 chr1 72302202 72302353 -209891311 + GA-rich Low_complexity Low_complexity 2 147 0 294 286 16 63 chr1 72302416 72302542 -209891122 + L2 LINE L2 1114 1233 -2081 957 45 0 0 chr1 72302556 72302690 -209890974 - AluSp/q SINE Alu 0 308 175 366 247 0 0 chr1 72302721 72302802 -209890862 - MLT1L LTR MaLR -113 502 422 639 288 50 14 chr1 72302849 72303071 -209890593 - MLT1L LTR MaLR -297 318 89 246 254 28 14 chr1 72303114 72303185 -209890479 + MLT1F1-int LTR MaLR 812 883 -488 820 252 18 122 chr1 72303320 72303721 -209889943 + MLT1F1-int LTR MaLR 989 1347 -24 1370 212 161 62 chr1 72303733 72303909 -209889755 + MLT1F1 LTR MaLR 1 158 -409 1921 124 65 0 chr1 72303909 72304184 -209889480 + AluSp SINE Alu 2 294 -19 2390 90 0 0 chr1 72304189 72304490 -209889174 - AluSx SINE Alu -11 301 1 1370 212 161 62 chr1 72304490 72304820 -209888844 + MLT1F1 LTR MaLR 161 557 -10 2350 91 3 0 chr1 72304923 72305219 -209888445 + AluSg SINE Alu 1 297 -13 485 259 295 10 chr1 72305498 72305691 -209887973 + MIR SINE MIR 2 249 -13 2248 107 0 3 chr1 72305979 72306277 -209887387 + AluSq SINE Alu 1 297 -16 435 309 8 0 chr1 72306293 72306419 -209887245 + MER94 DNA DNA 1 127 -7 774 186 24 0 chr1 72306680 72306804 -209886860 + FLAM_A SINE Alu 1 127 -6 239 324 139 32 chr1 72306825 72306945 -209886719 + L2 LINE L2 1959 2065 -1249 2268 100 0 3 chr1 72306945 72307244 -209886420 - AluSg SINE Alu -12 298 1 239 324 139 32 chr1 72307244 72307404 -209886260 + L2 LINE L2 2065 2269 -1045 737 162 132 88 chr1 72307413 72307532 -209886132 + MER33 DNA MER1_type 1 113 -2472 2548 57 0 16 chr1 72307532 72307848 -209885816 + AluY SINE Alu 1 311 0 737 162 132 88 chr1 72307848 72307956 -209885708 + MER33 DNA MER1_type 113 238 -86 1890 87 11 19 chr1 72308018 72308173 -209885491 - L1MA2 LINE L1 -4 6300 6145 209 30 61 0 chr1 72308173 72308206 -209885458 + T-rich Low_complexity Low_complexity 1 35 0 2077 125 0 0 chr1 72308206 72308487 -209885177 - AluSx SINE Alu -31 281 1 1890 87 11 19 chr1 72308487 72308596 -209885068 - L1MA2 LINE L1 -157 6147 6037 281 148 19 0 chr1 72308596 72308650 -209885014 + MER33 DNA MER1_type 282 336 -27 269 282 39 0 chr1 72308657 72308735 -209884929 + L2 LINE L2 2294 2374 -940 262 360 0 0 chr1 72308735 72308824 -209884840 + L2 LINE L2 2662 2750 -564 183 80 0 0 chr1 72308835 72308860 -209884804 + (A)n Simple_repeat Simple_repeat 1 25 0 191 61 30 0 chr1 72308965 72308998 -209884666 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 770 201 73 22 chr1 72309027 72309206 -209884458 - MIR SINE MIR -10 252 65 1662 168 20 3 chr1 72309366 72309663 -209884001 - AluJo SINE Alu -6 306 5 195 374 94 17 chr1 72309774 72310124 -209883540 + L2 LINE L2 2381 2757 -557 2167 53 43 0 chr1 72310343 72310624 -209883040 - AluY SINE Alu -13 298 6 407 242 31 62 chr1 72310817 72310945 -209882719 - L2 LINE L2 -6 3307 3184 1794 151 0 20 chr1 72311793 72312098 -209881566 + AluJo SINE Alu 1 299 -13 32 26 0 0 chr1 72316871 72316910 -209876754 + AT_rich Low_complexity Low_complexity 1 39 0 247 255 9 28 chr1 72319321 72319427 -209874237 + (CGG)n Simple_repeat Simple_repeat 2 105 0 24 0 0 0 chr1 72319827 72319851 -209873813 + GC_rich Low_complexity Low_complexity 1 24 0 195 114 0 0 chr1 72319910 72319945 -209873719 + (CGG)n Simple_repeat Simple_repeat 1 35 0 22 70 0 0 chr1 72320088 72320131 -209873533 + GC_rich Low_complexity Low_complexity 1 43 0 205 162 0 0 chr1 72320420 72320457 -209873207 + (CCG)n Simple_repeat Simple_repeat 3 39 0 21 0 0 0 chr1 72320969 72320990 -209872674 + AT_rich Low_complexity Low_complexity 1 21 0 246 331 63 35 chr1 72324381 72324523 -209869141 + MIR SINE MIR 71 216 -46 194 308 112 0 chr1 72325423 72325530 -209868134 - MIR3 SINE MIR -9 199 81 183 276 66 26 chr1 72326781 72326857 -209866807 + L2 LINE L2 3233 3311 -2 454 273 47 47 chr1 72327137 72327309 -209866355 - L3 LINE CR1 -46 1531 1360 555 279 7 15 chr1 72328904 72329040 -209864624 + MIR SINE MIR 20 154 -108 383 123 18 0 chr1 72329746 72329803 -209863861 + U7 snRNA snRNA 2 59 -4 22 0 0 0 chr1 72329808 72329830 -209863834 + AT_rich Low_complexity Low_complexity 1 22 0 2229 105 0 6 chr1 72329969 72330284 -209863380 - AluSq SINE Alu 0 313 1 829 87 7 27 chr1 72330390 72330540 -209863124 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 842 181 140 0 chr1 72330541 72330712 -209862952 - AluJo SINE Alu -32 280 86 441 36 0 0 chr1 72331285 72331340 -209862324 + (TG)n Simple_repeat Simple_repeat 2 56 0 746 209 7 156 chr1 72331877 72332023 -209861641 + MIR SINE MIR 2 80 -182 1461 176 72 0 chr1 72332023 72332285 -209861379 - AluJb SINE Alu -21 291 11 746 209 7 156 chr1 72332285 72332445 -209861219 + MIR SINE MIR 80 262 0 1869 138 0 3 chr1 72332511 72332794 -209860870 - AluJb SINE Alu -20 292 11 855 74 7 114 chr1 72332836 72332885 -209860779 + MLT1A1 LTR MaLR 10 63 -302 2460 50 3 0 chr1 72332885 72333183 -209860481 + AluY SINE Alu 1 299 -12 855 74 7 114 chr1 72333183 72333282 -209860382 + MLT1A1 LTR MaLR 63 142 -223 1518 121 0 27 chr1 72333352 72333576 -209860088 + MER30 DNA MER1_type 13 230 0 265 79 0 0 chr1 72333576 72333614 -209860050 + L1MA9 LINE L1 6231 6268 -44 1976 127 0 19 chr1 72333638 72333945 -209859719 + AluSq SINE Alu 1 301 -12 475 111 81 71 chr1 72333945 72333987 -209859677 + HY3 scRNA scRNA 1 41 -60 1965 143 0 6 chr1 72333987 72334301 -209859363 - AluSx SINE Alu 0 312 1 475 111 81 71 chr1 72334301 72334357 -209859307 + HY3 scRNA scRNA 41 100 -1 1899 141 14 0 chr1 72334369 72334666 -209858998 + AluJb SINE Alu 1 301 -11 2201 99 0 3 chr1 72334666 72334959 -209858705 + AluSx SINE Alu 1 292 -20 2286 91 0 0 chr1 72334959 72335254 -209858410 + AluY SINE Alu 1 296 -15 28 29 0 0 chr1 72335304 72335339 -209858325 + AT_rich Low_complexity Low_complexity 1 35 0 2034 117 3 25 chr1 72335707 72336023 -209857641 - AluSx SINE Alu -3 309 1 1516 176 0 11 chr1 72336152 72336430 -209857234 + AluJo SINE Alu 3 277 -35 299 102 41 0 chr1 72336430 72336479 -209857185 + Alu SINE Alu 251 301 -1 2303 90 0 3 chr1 72336479 72336815 -209856849 + AluY SINE Alu 1 335 0 810 173 127 25 chr1 72336882 72337079 -209856585 + MIR SINE MIR 10 226 -36 404 147 15 0 chr1 72337110 72337178 -209856486 - MIR SINE MIR -48 214 146 1252 203 33 4 chr1 72337252 72337493 -209856171 - AluJo SINE Alu -64 248 1 243 0 0 0 chr1 72337887 72337914 -209855750 + (T)n Simple_repeat Simple_repeat 1 27 0 1746 138 7 7 chr1 72338054 72338344 -209855320 + AluSx SINE Alu 19 308 -4 1541 185 7 20 chr1 72338646 72338943 -209854721 - AluJo SINE Alu -19 293 1 290 170 0 0 chr1 72338943 72338990 -209854674 - AluJo SINE Alu -167 135 89 920 227 76 48 chr1 72339153 72339404 -209854260 + MIR SINE MIR 2 259 -3 1994 130 3 0 chr1 72339410 72339709 -209853955 - AluSx SINE Alu -12 300 1 459 191 265 7 chr1 72339861 72339997 -209853667 + MLT1B LTR MaLR 4 174 -216 259 217 0 24 chr1 72340001 72340084 -209853580 + CT-rich Low_complexity Low_complexity 2 82 0 996 185 16 11 chr1 72340094 72340283 -209853381 + MLT1B LTR MaLR 197 386 -4 412 252 69 23 chr1 72340398 72340529 -209853135 + MIR3 SINE MIR 10 146 -62 340 277 22 66 chr1 72341196 72341333 -209852331 + MIR SINE MIR 54 184 -78 258 271 260 0 chr1 72341349 72341445 -209852219 + L2 LINE L2 3151 3271 -1 188 328 0 0 chr1 72341435 72341499 -209852165 + MIR SINE MIR 195 258 -4 * 1623 173 7 17 chr1 72341557 72341858 -209851806 - AluJo SINE Alu -14 298 1 873 302 39 22 chr1 72341858 72342237 -209851427 + MLT1K LTR MaLR 24 467 -121 279 309 90 64 chr1 72342618 72342755 -209850909 - MLT1J LTR MaLR -3 508 376 2020 116 3 0 chr1 72342755 72343039 -209850625 + AluSx SINE Alu 1 285 -27 314 44 0 22 chr1 72343039 72343084 -209850580 + (TA)n Simple_repeat Simple_repeat 2 45 0 1621 171 3 36 chr1 72343087 72343396 -209850268 + AluJb SINE Alu 1 299 -13 279 309 90 64 chr1 72343396 72343441 -209850223 - MLT1J LTR MaLR -136 375 316 704 176 8 0 chr1 72343470 72343589 -209850075 + MLT1D LTR MaLR 2 121 -384 1686 160 0 23 chr1 72343589 72343728 -209849936 + AluSp SINE Alu 1 142 -171 2089 109 10 0 chr1 72343728 72344021 -209849643 + AluSg SINE Alu 1 296 -14 1686 160 0 23 chr1 72344021 72344188 -209849476 + AluSp SINE Alu 142 300 -13 25 0 0 0 chr1 72344188 72344213 -209849451 + AT_rich Low_complexity Low_complexity 1 25 0 479 158 78 17 chr1 72344213 72344408 -209849256 + MLT1D LTR MaLR 218 502 -3 285 220 56 140 chr1 72344417 72344631 -209849033 - MLT1J LTR MaLR -206 305 110 558 268 111 13 chr1 72345611 72345846 -209847818 + L1MC4a LINE L1 5647 5904 -1904 1702 170 3 28 chr1 72345929 72346247 -209847417 - AluSx SINE Alu -2 310 1 1407 233 54 29 chr1 72346273 72346755 -209846909 - MLT1H LTR MaLR 0 549 2 1368 163 62 4 chr1 72346809 72347067 -209846597 + AluJb SINE Alu 1 273 -39 450 0 0 0 chr1 72347069 72347119 -209846545 + (CA)n Simple_repeat Simple_repeat 1 50 0 652 275 28 22 chr1 72347141 72347323 -209846341 - MIR3 SINE MIR -3 205 23 1862 64 25 0 chr1 72347451 72347687 -209845977 - L1PA7 LINE L1 0 6154 5913 250 335 79 33 chr1 72348071 72348223 -209845441 - L2 LINE L2 -8 3264 3106 196 30 61 0 chr1 72348868 72348901 -209844763 + A-rich Low_complexity Low_complexity 122 156 0 29 0 0 0 chr1 72350265 72350294 -209843370 + AT_rich Low_complexity Low_complexity 1 29 0 821 167 0 0 chr1 72350333 72350471 -209843193 - FLAM_C SINE Alu -5 138 1 219 270 90 27 chr1 72351234 72351345 -209842319 - L3b LINE CR1 -138 1445 1328 200 241 0 17 chr1 72351754 72351812 -209841852 + (TA)n Simple_repeat Simple_repeat 2 58 0 197 36 0 0 chr1 72351923 72351951 -209841713 + L2 LINE L2 3286 3313 0 1677 157 7 4 chr1 72352052 72352332 -209841332 + AluSx SINE Alu 6 286 -26 834 17 0 26 chr1 72352332 72352447 -209841217 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 1322 164 34 121 chr1 72352448 72352888 -209840776 + L1MC5 LINE L1 6621 7022 -939 405 0 0 0 chr1 72352918 72352963 -209840701 + (CA)n Simple_repeat Simple_repeat 1 45 0 1877 132 0 14 chr1 72353083 72353379 -209840285 - AluSx SINE Alu -20 292 1 278 194 15 0 chr1 72353389 72353456 -209840208 + CT-rich Low_complexity Low_complexity 1 68 0 2087 111 3 13 chr1 72353505 72353820 -209839844 + AluSx SINE Alu 1 312 0 1687 159 3 13 chr1 72354078 72354379 -209839285 - AluJo SINE Alu -9 303 6 703 138 26 17 chr1 72354402 72354518 -209839146 - FLAM_A SINE Alu -4 138 22 226 120 13 107 chr1 72354610 72354685 -209838979 + (TTTTA)n Simple_repeat Simple_repeat 1 68 0 250 205 167 0 chr1 72354886 72354964 -209838700 - MER103 DNA DNA -3 163 73 606 225 17 0 chr1 72354964 72355084 -209838580 + FLAM_A SINE Alu 1 122 -11 2141 120 0 0 chr1 72355164 72355465 -209838199 + AluSx SINE Alu 1 301 -11 262 308 77 46 chr1 72357186 72357316 -209836348 + L2 LINE L2 3137 3270 -2 2175 125 0 0 chr1 72357371 72357676 -209835988 + AluSx SINE Alu 1 305 -7 294 236 36 73 chr1 72357822 72357932 -209835732 + MIR SINE MIR 119 224 -38 2315 144 15 15 chr1 72358307 72358697 -209834967 - MLT1B LTR MaLR 0 390 1 830 249 105 28 chr1 72358891 72359334 -209834330 + MLT1H1 LTR MaLR 1 554 -1 1989 85 67 7 chr1 72359417 72359699 -209833965 - AluY SINE Alu -10 301 3 2449 60 0 13 chr1 72359710 72360011 -209833653 - AluY SINE Alu -14 297 1 1956 159 0 10 chr1 72360060 72360362 -209833302 - AluJb SINE Alu -13 299 1 528 292 15 41 chr1 72360508 72360775 -209832889 - MIR SINE MIR -1 261 2 208 222 22 0 chr1 72360840 72360885 -209832779 - L2 LINE L2 -6 3266 3221 569 209 74 6 chr1 72361094 72361257 -209832407 + MER104 DNA Tc2 6 179 -1 257 347 132 39 chr1 72361465 72361739 -209831925 + L2 LINE L2 2230 2477 -837 2244 92 3 26 chr1 72361739 72362045 -209831619 + AluSp SINE Alu 1 299 -14 257 347 132 39 chr1 72362045 72362340 -209831324 + L2 LINE L2 2477 2852 -462 194 279 118 0 chr1 72362616 72362684 -209830980 + L2 LINE L2 3180 3255 -58 293 196 0 20 chr1 72362714 72362784 -209830880 - MIR3 SINE MIR -35 173 105 300 321 18 18 chr1 72364345 72364454 -209829210 - L2 LINE L2 -5 3308 3200 2473 67 0 7 chr1 72364488 72364787 -209828877 - AluSx SINE Alu -15 297 1 874 210 52 61 chr1 72364789 72365117 -209828547 - L1ME3A LINE L1 -1 6169 5845 2355 109 0 0 chr1 72365333 72365644 -209828020 + AluSq SINE Alu 1 311 -2 2383 87 3 0 chr1 72365803 72366103 -209827561 - AluSq SINE Alu -11 302 2 181 161 97 81 chr1 72366874 72366936 -209826728 - L2 LINE L2 -576 2738 2676 236 394 73 33 chr1 72367496 72367576 -209826088 - L2 LINE L2 -22 3250 3175 2199 99 0 0 chr1 72367576 72367889 -209825775 - AluSg SINE Alu 0 313 1 236 394 73 33 chr1 72367889 72368233 -209825431 - L2 LINE L2 -97 3175 2808 204 250 15 15 chr1 72368337 72368405 -209825259 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 186 261 8 15 chr1 72368409 72368539 -209825125 + (TA)n Simple_repeat Simple_repeat 2 130 0 242 184 26 40 chr1 72368546 72368622 -209825042 + L1MC4 LINE L1 6614 6688 -1354 2187 112 7 0 chr1 72368658 72368944 -209824720 - AluSg SINE Alu -22 288 1 1838 167 3 3 chr1 72369000 72369293 -209824371 - AluJb SINE Alu -19 293 1 1667 145 32 0 chr1 72369347 72369595 -209824069 + AluSx SINE Alu 41 296 -16 23 33 0 0 chr1 72369613 72369643 -209824021 + AT_rich Low_complexity Low_complexity 1 30 0 1412 139 166 15 chr1 72369645 72369904 -209823760 - AluJo SINE Alu -10 302 5 234 313 48 24 chr1 72370069 72370152 -209823512 - MIR SINE MIR -170 92 8 419 222 111 65 chr1 72370216 72370334 -209823330 + MIR SINE MIR 47 175 -87 2207 92 7 0 chr1 72370334 72370627 -209823037 + AluSx SINE Alu 1 295 -17 419 222 111 65 chr1 72370627 72370661 -209823003 + MIR SINE MIR 175 206 -56 202 372 0 26 chr1 72370821 72370899 -209822765 - L2 LINE L2 -74 3198 3123 1748 142 39 3 chr1 72370914 72371196 -209822468 + AluSx SINE Alu 1 292 -20 1944 125 6 52 chr1 72371219 72371546 -209822118 - AluSx SINE Alu 0 312 1 1026 267 47 19 chr1 72371552 72372016 -209821648 - L1MDa LINE L1 -2451 4089 3613 1961 156 12 3 chr1 72372019 72372359 -209821305 - MER7A DNA MER2_type 0 346 6 585 285 130 24 chr1 72372528 72372956 -209820708 - L1MDa LINE L1 -3217 3323 2813 1998 96 26 4 chr1 72372956 72373227 -209820437 - AluSx SINE Alu -14 298 22 585 285 130 24 chr1 72373227 72373391 -209820273 - L1MDa LINE L1 -3727 2813 2668 1684 182 0 31 chr1 72373710 72374029 -209819635 - AluJo SINE Alu -2 310 2 384 281 99 20 chr1 72374042 72374378 -209819286 - L1MDa LINE L1 -861 2040 1729 310 309 87 24 chr1 72374428 72374554 -209819110 - L1MDa LINE L1 -4913 1627 1494 294 250 0 45 chr1 72374555 72374643 -209819021 - L2 LINE L2 -33 3280 3197 1052 277 63 70 chr1 72374644 72375416 -209818248 - L1MDa LINE L1 -4928 1602 836 46 92 0 0 chr1 72375673 72375803 -209817861 + AT_rich Low_complexity Low_complexity 1 130 0 202 208 38 38 chr1 72375876 72375929 -209817735 - MER5B DNA MER1_type -116 62 10 350 312 175 15 chr1 72376053 72376390 -209817274 - L2 LINE L2 -1211 2103 1713 1770 143 9 63 chr1 72377024 72377159 -209816505 + AluJb SINE Alu 1 142 -170 2506 58 7 0 chr1 72377159 72377468 -209816196 + AluY SINE Alu 1 311 0 1770 143 9 63 chr1 72377468 72377647 -209816017 + AluJb SINE Alu 142 298 -14 255 61 0 0 chr1 72377647 72377680 -209815984 + (GGGGA)n Simple_repeat Simple_repeat 3 35 0 615 235 8 8 chr1 72377856 72377988 -209815676 - FAM SINE Alu -16 169 38 333 136 0 0 chr1 72378088 72378147 -209815517 - L1MA1 LINE L1 0 6302 6244 36 0 0 0 chr1 72378147 72378183 -209815481 + AT_rich Low_complexity Low_complexity 1 36 0 1799 138 0 4 chr1 72378183 72378444 -209815220 - AluSx SINE Alu -7 305 46 1966 108 3 93 chr1 72378457 72378652 -209815012 - AluSx SINE Alu -9 303 149 2560 58 0 3 chr1 72378652 72378962 -209814702 - AluY SINE Alu -2 309 1 1966 108 3 93 chr1 72378962 72379099 -209814565 - AluSx SINE Alu -163 149 1 1853 129 20 53 chr1 72379101 72379404 -209814260 - AluSg SINE Alu -17 293 1 947 211 0 0 chr1 72379408 72379569 -209814095 - AluJb SINE Alu -18 294 134 14327 161 34 19 chr1 72379569 72381174 -209812490 - L1MA3 LINE L1 -47 7677 6099 2395 90 0 40 chr1 72381174 72381497 -209812167 - AluSg SINE Alu 0 310 1 14327 161 34 19 chr1 72381497 72383519 -209810145 - L1MA3 LINE L1 -1625 6099 3805 2349 100 3 3 chr1 72383519 72383828 -209809836 - AluSx SINE Alu -3 309 1 14327 161 34 19 chr1 72383828 72383996 -209809668 - L1MA3 LINE L1 -3919 3805 3641 1561 97 0 10 chr1 72383998 72384205 -209809459 - AluSx SINE Alu -107 205 1 860 191 6 12 chr1 72384207 72384369 -209809295 - AluSg/x SINE Alu -67 243 83 10970 144 39 12 chr1 72384369 72387070 -209806594 - L1MA3 LINE L1 -4206 3359 16 1134 273 135 12 chr1 72387155 72387635 -209806029 - MER34 LTR ERV1 -3 539 1 2254 117 3 0 chr1 72388159 72388457 -209805207 - AluSx SINE Alu -13 299 1 185 295 0 0 chr1 72389519 72389580 -209804084 - L2 LINE L2 -221 3051 2991 2262 84 37 0 chr1 72390356 72390654 -209803010 - AluY SINE Alu -2 309 1 535 248 168 0 chr1 72390711 72390848 -209802816 + MIR SINE MIR 2 161 -101 2459 73 3 0 chr1 72390848 72391150 -209802514 - AluSg SINE Alu -7 303 1 237 232 121 30 chr1 72391218 72391317 -209802347 + MER46C DNA MER2_type 1 108 -230 2048 132 3 0 chr1 72391400 72391689 -209801975 + AluSx SINE Alu 1 290 -22 2013 141 17 26 chr1 72391800 72392147 -209801517 - MER2 DNA MER2_type 0 344 1 454 266 64 57 chr1 72392154 72392409 -209801255 - MIR SINE MIR 0 262 3 352 275 0 0 chr1 72393068 72393159 -209800505 + L2 LINE L2 3223 3313 0 2260 104 0 3 chr1 72393173 72393471 -209800193 - AluSg SINE Alu -13 297 1 1147 274 8 0 chr1 72393707 72393955 -209799709 + MIR SINE MIR 7 256 -6 2451 57 0 10 chr1 72394465 72394761 -209798903 - AluY SINE Alu -18 293 1 2241 231 35 44 chr1 72394860 72395457 -209798207 - MLT1E LTR MaLR 0 593 2 279 232 0 0 chr1 72395596 72395665 -209797999 + L1MC4 LINE L1 7974 8042 0 2376 75 10 0 chr1 72395901 72396193 -209797471 + AluSp SINE Alu 1 295 -18 1194 107 0 0 chr1 72396193 72396370 -209797294 + (TA)n Simple_repeat Simple_repeat 1 177 0 245 203 152 0 chr1 72396784 72396863 -209796801 - MIR SINE MIR -16 246 156 2219 86 0 36 chr1 72397370 72397672 -209795992 + AluSx SINE Alu 1 291 -21 185 213 0 21 chr1 72397919 72397966 -209795698 + L2 LINE L2 3219 3264 -8 404 184 0 0 chr1 72398045 72398121 -209795543 - MER94 DNA DNA 0 134 59 2396 108 0 0 chr1 72398447 72398753 -209794911 - AluSx SINE Alu -6 306 1 2501 78 0 3 chr1 72398801 72399110 -209794554 + AluSc SINE Alu 1 308 -1 1796 162 40 0 chr1 72399556 72399883 -209793781 - MER7A DNA MER2_type 0 346 9 22 35 0 0 chr1 72400549 72400578 -209793086 + AT_rich Low_complexity Low_complexity 1 29 0 414 273 33 0 chr1 72400723 72400844 -209792820 - MIR SINE MIR -38 224 100 796 316 125 32 chr1 72401232 72401640 -209792024 - L3 LINE CR1 -58 1519 1074 1459 254 99 51 chr1 72404019 72404719 -209788945 - L1ME3A LINE L1 -14 6156 5424 2046 135 0 26 chr1 72404763 72405066 -209788598 - AluSq SINE Alu -18 295 1 527 315 30 0 chr1 72405070 72405235 -209788429 + MIR SINE MIR 93 262 0 379 245 84 59 chr1 72405263 72405586 -209788078 - HAL1 LINE L1 -1090 1417 1046 233 338 0 52 chr1 72406213 72406245 -209787419 - HAL1 LINE L1 -2378 129 97 1702 172 34 3 chr1 72406245 72406541 -209787123 - AluJo SINE Alu -7 305 1 233 338 0 52 chr1 72406541 72406644 -209787020 - HAL1 LINE L1 -2410 97 1 186 103 0 0 chr1 72408176 72408205 -209785459 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 877 143 15 0 chr1 72408205 72408338 -209785326 - FAM SINE Alu -30 155 21 369 268 262 6 chr1 72409027 72409195 -209784469 - MIR SINE MIR 0 262 52 413 241 0 0 chr1 72609500 72609587 -209584077 - MIR SINE MIR -14 248 162 22 0 0 0 chr1 72610161 72610183 -209583481 + AT_rich Low_complexity Low_complexity 1 22 0 206 75 0 50 chr1 72610605 72610645 -209583019 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 2253 95 0 0 chr1 72611170 72611465 -209582199 - AluSx SINE Alu -17 295 1 4685 100 63 13 chr1 72612329 72613101 -209580563 + L1MA2 LINE L1 5493 6303 -1 248 232 94 72 chr1 72613202 72613340 -209580324 - L1ME LINE L1 -304 5817 5677 2331 94 3 0 chr1 72613833 72614142 -209579522 + AluSp SINE Alu 2 311 -2 2051 104 0 34 chr1 72614142 72614440 -209579224 - AluSx SINE Alu -19 293 6 2704 123 19 61 chr1 72615265 72615786 -209577878 - L1MA6 LINE L1 -1 6299 5801 421 158 167 61 chr1 72617214 72617328 -209576336 - L1MA9 LINE L1 0 6312 6187 27 49 0 0 chr1 72619482 72619523 -209574141 + AT_rich Low_complexity Low_complexity 1 41 0 226 270 0 32 chr1 72619670 72619733 -209573931 - L2 LINE L2 0 3272 3212 358 150 67 0 chr1 72619836 72619896 -209573768 - L2 LINE L2 0 3313 3250 543 292 68 41 chr1 72619903 72620122 -209573542 + MIR SINE MIR 12 236 -26 236 361 152 6 chr1 72620206 72620364 -209573300 - L2 LINE L2 -560 2754 2574 2018 133 6 19 chr1 72620765 72621081 -209572583 - AluSx SINE Alu 0 312 1 346 140 53 0 chr1 72621114 72621171 -209572493 - U7 snRNA snRNA -3 60 1 2249 95 7 3 chr1 72622846 72623151 -209570513 - AluSg SINE Alu -4 306 1 307 289 81 64 chr1 72623945 72624118 -209569546 + MIR3 SINE MIR 27 202 -6 26 0 0 0 chr1 72624147 72624173 -209569491 + AT_rich Low_complexity Low_complexity 1 26 0 2443 72 0 3 chr1 72624481 72624787 -209568877 + AluSx SINE Alu 1 305 -7 195 395 46 28 chr1 72624901 72625010 -209568654 + MIR SINE MIR 34 144 -64 205 225 12 62 chr1 72625276 72625356 -209568308 + A-rich Low_complexity Low_complexity 3 78 0 376 271 79 59 chr1 72625384 72625587 -209568077 + L1ME LINE L1 5255 5461 -2347 453 281 126 20 chr1 72625721 72625967 -209567697 + L1ME LINE L1 5525 5796 -325 2199 98 10 0 chr1 72625967 72626263 -209567401 - AluSq SINE Alu -14 299 1 4928 171 29 24 chr1 72626334 72627820 -209565844 - L1MB3 LINE L1 -10 6173 4675 2118 125 3 3 chr1 72628358 72628670 -209564994 - AluSx SINE Alu 0 312 1 2275 86 0 0 chr1 72628821 72629111 -209564553 - AluSg SINE Alu -20 290 1 2273 116 0 0 chr1 72629307 72629617 -209564047 - AluSg SINE Alu 0 310 1 222 288 85 0 chr1 72629755 72629814 -209563850 - L2 LINE L2 -11 3302 3239 1862 81 104 0 chr1 72629878 72630137 -209563527 - AluSp SINE Alu -23 290 5 2230 87 0 10 chr1 72630770 72631068 -209562596 - AluSx SINE Alu -17 295 1 857 265 29 38 chr1 72631644 72631957 -209561707 - L2 LINE L2 0 3313 3004 1630 249 110 22 chr1 72631958 72632449 -209561215 - MLT1H LTR MaLR 0 549 16 537 267 86 19 chr1 72632523 72632733 -209560931 - L2 LINE L2 -337 2977 2754 556 151 72 0 chr1 72632864 72633003 -209560661 - L1MCa LINE L1 -5011 1930 1782 * 813 206 41 23 chr1 72632994 72633212 -209560452 - L1MCa LINE L1 -6150 273 52 387 228 50 20 chr1 72633223 72633324 -209560340 - L2 LINE L2 -564 2750 2647 21 21 0 64 chr1 72634252 72634299 -209559365 + AT_rich Low_complexity Low_complexity 1 44 0 1359 253 140 7 chr1 72635050 72635458 -209558206 - L2 LINE L2 -639 2675 2214 534 252 13 13 chr1 72635463 72635614 -209558050 - L1MCc LINE L1 -6176 247 97 2212 103 0 3 chr1 72635711 72636003 -209557661 + AluSc SINE Alu 1 291 -18 37 39 0 0 chr1 72636374 72636425 -209557239 + AT_rich Low_complexity Low_complexity 1 51 0 969 210 0 0 chr1 72636474 72636641 -209557023 + FAM SINE Alu 1 167 -8 2222 72 7 0 chr1 72637736 72638037 -209555627 - AluSc SINE Alu 0 303 1 1338 201 72 4 chr1 72638231 72638523 -209555141 - AluJo SINE Alu 0 310 1 2157 132 3 0 chr1 72638729 72639040 -209554624 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 72639276 72639301 -209554363 + AT_rich Low_complexity Low_complexity 1 25 0 2311 129 30 46 chr1 72640039 72640138 -209553526 + L1MA8 LINE L1 5837 5936 -355 1611 160 23 40 chr1 72640138 72640438 -209553226 - AluJo SINE Alu -17 295 1 2311 129 30 46 chr1 72640438 72640773 -209552891 + L1MA8 LINE L1 5936 6264 -27 2343 51 0 51 chr1 72641141 72641454 -209552210 + AluY SINE Alu 1 297 -14 537 249 116 6 chr1 72642740 72642921 -209550743 - MIR SINE MIR -10 252 52 529 95 0 0 chr1 72643154 72643255 -209550409 - AluY SINE Alu 0 308 208 954 126 87 24 chr1 72643255 72643301 -209550363 - L1MC2 LINE L1 -12 6332 6290 732 192 23 0 chr1 72643301 72643431 -209550233 + FLAM_C SINE Alu 1 133 0 2091 134 0 0 chr1 72643440 72643732 -209549932 + AluSx SINE Alu 21 312 0 954 126 87 24 chr1 72643732 72643881 -209549783 - L1MC2 LINE L1 -61 6283 6114 1164 158 11 5 chr1 72643902 72644092 -209549572 - AluJb SINE Alu -51 261 71 1047 159 29 19 chr1 72644092 72644353 -209549311 - L1MC2 LINE L1 -212 6132 4725 2377 69 10 0 chr1 72644361 72644652 -209549012 - AluY SINE Alu -17 294 1 2263 87 3 19 chr1 72644913 72645222 -209548442 - AluSx SINE Alu -8 304 1 22 99 0 0 chr1 72646008 72646079 -209547585 + AT_rich Low_complexity Low_complexity 1 71 0 292 278 0 0 chr1 72646676 72646748 -209546916 + MIR SINE MIR 190 261 -1 417 20 0 0 chr1 72646846 72646896 -209546768 + (TA)n Simple_repeat Simple_repeat 1 50 0 1366 122 4 52 chr1 72646900 72647129 -209546535 - AluJo SINE Alu -14 298 81 25 31 0 0 chr1 72647634 72647666 -209545998 + AT_rich Low_complexity Low_complexity 1 32 0 233 103 77 0 chr1 72647770 72647809 -209545855 - MER110A LTR ERV1 -4 464 423 5949 87 45 3 chr1 72648779 72649465 -209544199 + L1PA13 LINE L1 4309 4965 -1198 2228 84 3 43 chr1 72649465 72649787 -209543877 + AluY SINE Alu 1 309 -2 5949 87 45 3 chr1 72649787 72650917 -209542747 + L1PA13 LINE L1 4965 6163 0 26 30 0 0 chr1 72651090 72651123 -209542541 + AT_rich Low_complexity Low_complexity 1 33 0 23 24 0 24 chr1 72651237 72651261 -209542403 + AT_rich Low_complexity Low_complexity 1 25 -15 201 44 22 44 chr1 72651261 72651306 -209542358 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 23 24 0 24 chr1 72651306 72651322 -209542342 + AT_rich Low_complexity Low_complexity 25 40 0 853 331 60 19 chr1 72651409 72651571 -209542093 - L2 LINE L2 0 3313 3159 2180 118 0 0 chr1 72651571 72651867 -209541797 + AluSq SINE Alu 1 296 -17 853 331 60 19 chr1 72651867 72652073 -209541591 - L2 LINE L2 -154 3159 2930 23 0 0 0 chr1 72652648 72652671 -209540993 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 72653329 72653354 -209540310 + AT_rich Low_complexity Low_complexity 1 25 0 769 236 113 10 chr1 72654409 72654612 -209539052 - MIR SINE MIR -1 261 38 370 296 102 95 chr1 72654711 72655005 -209538659 + L2 LINE L2 2965 3260 -12 362 272 31 115 chr1 72655669 72655792 -209537872 + MIR SINE MIR 30 133 -129 2445 69 13 0 chr1 72655792 72656096 -209537568 + AluSq SINE Alu 1 308 -5 362 272 31 115 chr1 72656096 72656163 -209537501 + MIR SINE MIR 133 204 -58 23 0 0 0 chr1 72657064 72657087 -209536577 + AT_rich Low_complexity Low_complexity 1 23 0 1940 90 34 25 chr1 72657144 72657501 -209536163 - LTR7 LTR ERV1 -46 404 1 2524 68 47 21 chr1 72657501 72657881 -209535783 - HERVH LTR ERV1 0 7713 7324 1378 129 14 0 chr1 72657881 72658098 -209535566 - HERVH LTR ERV1 -1894 5819 5600 4713 120 7 4 chr1 72658099 72658977 -209534687 - HERVH LTR ERV1 -2564 5149 4221 1990 146 2 4 chr1 72658975 72659300 -209534364 - HERVH LTR ERV1 -3104 5522 3993 * 22 56 0 0 chr1 72659401 72659437 -209534227 + AT_rich Low_complexity Low_complexity 1 36 0 1593 186 10 14 chr1 72659996 72660287 -209533377 - AluJo SINE Alu -22 290 1 2214 113 10 0 chr1 72660599 72660908 -209532756 + AluSq SINE Alu 1 312 -1 2195 77 0 51 chr1 72660940 72661251 -209532413 + AluSx SINE Alu 3 297 -15 2013 114 32 0 chr1 72661268 72661549 -209532115 + AluSg SINE Alu 1 290 -20 344 157 82 127 chr1 72661677 72661811 -209531853 - Tigger8 DNA MER2_type -151 515 388 30 27 0 0 chr1 72662343 72662380 -209531284 + AT_rich Low_complexity Low_complexity 1 37 0 320 381 22 8 chr1 72662684 72662818 -209530846 - L2 LINE L2 -10 3262 3127 2496 54 7 0 chr1 72662847 72663141 -209530523 - AluY SINE Alu -15 296 1 359 358 22 8 chr1 72663155 72663289 -209530375 - L2 LINE L2 -10 3262 3127 7134 205 48 76 chr1 72663503 72665688 -209527976 - L1MD2 LINE L1 -227 6132 3888 580 195 186 0 chr1 72665688 72665806 -209527858 + FLAM_A SINE Alu 1 140 -2 7134 205 48 76 chr1 72665806 72666024 -209527640 - L1MD2 LINE L1 -2471 3888 3665 15457 118 66 62 chr1 72666024 72667010 -209526654 + Tigger2 DNA MER2_type 1 982 -1736 2165 108 10 10 chr1 72667010 72667305 -209526359 - AluSx SINE Alu -17 295 1 15457 118 66 62 chr1 72667305 72668674 -209524990 + Tigger2 DNA MER2_type 982 2369 -349 1969 150 14 0 chr1 72668674 72668967 -209524697 + AluJo SINE Alu 1 297 -15 15457 118 66 62 chr1 72668967 72669319 -209524345 + Tigger2 DNA MER2_type 2369 2718 0 7134 205 48 76 chr1 72669319 72670000 -209523664 - L1MD2 LINE L1 -2694 3665 3012 2557 80 58 19 chr1 72670747 72671108 -209522556 - THE1C LTR MaLR 0 375 1 2158 204 87 13 chr1 72671111 72671581 -209522083 - MLT1D LTR MaLR 0 505 1 1584 111 44 8 chr1 72672724 72672976 -209520688 + L1MB3 LINE L1 5923 6183 0 448 344 53 69 chr1 72673054 72673403 -209520261 + L2 LINE L2 2844 3186 -86 2446 80 0 0 chr1 72673403 72673705 -209519959 - AluY SINE Alu -9 302 1 448 344 53 69 chr1 72673705 72673791 -209519873 + L2 LINE L2 3186 3272 0 2116 134 7 0 chr1 72673849 72674154 -209519510 + AluSx SINE Alu 1 307 -5 294 259 0 0 chr1 72674441 72674499 -209519165 + MLT1E1 LTR MaLR 77 134 -520 399 185 0 0 chr1 72674528 72674593 -209519071 + MLT1E2 LTR MaLR 357 421 -205 1989 153 116 5 chr1 72674597 72674977 -209518687 - MER95 LTR ERV -9 422 1 278 190 121 0 chr1 72674977 72675035 -209518629 + MLT1E3 LTR MaLR 420 484 -142 639 105 193 0 chr1 72675116 72675230 -209518434 + MER95 LTR ERV 161 296 -135 538 148 10 30 chr1 72675287 72675380 -209518284 + MLT1E3 LTR MaLR 526 618 -6 1611 138 17 0 chr1 72675380 72675612 -209518052 + MER46A DNA MER2_type 1 236 0 304 222 16 0 chr1 72675619 72675682 -209517982 - MLT1E LTR MaLR -521 72 9 391 221 0 32 chr1 72675729 72675824 -209517840 + MLT1H LTR MaLR 458 549 0 188 193 181 12 chr1 72675951 72676034 -209517630 - MIR SINE MIR -12 250 154 200 322 67 11 chr1 72676075 72676165 -209517499 + MIR SINE MIR 79 173 -89 180 233 47 0 chr1 72676458 72676501 -209517163 - L2 LINE L2 -16 3297 3253 317 270 72 0 chr1 72676642 72676753 -209516911 - MIR SINE MIR -70 192 74 313 286 83 15 chr1 72677098 72677231 -209516433 + MIR SINE MIR 20 161 -101 2430 46 0 61 chr1 72679060 72679386 -209514278 + AluY SINE Alu 1 306 -5 506 231 54 27 chr1 72679575 72679722 -209513942 - MIR SINE MIR -17 245 95 237 83 0 0 chr1 72680040 72680076 -209513588 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 629 287 110 20 chr1 72680246 72680591 -209513073 + L2 LINE L2 1697 2072 -1242 2396 97 7 0 chr1 72680619 72680957 -209512707 - AluSx SINE Alu 0 340 1 186 316 205 8 chr1 72681177 72681294 -209512370 + L2 LINE L2 3121 3260 -12 281 303 126 76 chr1 72681370 72681647 -209512017 - L2 LINE L2 0 3272 2982 213 320 60 30 chr1 72681721 72681821 -209511843 + MIR SINE MIR 110 212 -50 426 298 0 0 chr1 72681968 72682072 -209511592 - MLT1K LTR MaLR -1 587 484 1577 164 72 102 chr1 72682309 72682385 -209511279 - Charlie4a DNA MER1_type -1469 492 415 1753 154 0 31 chr1 72682385 72682678 -209510986 - AluJb SINE Alu -27 285 2 1577 164 72 102 chr1 72682678 72682958 -209510706 - Charlie4a DNA MER1_type -1546 415 152 240 111 0 0 chr1 72682958 72682994 -209510670 + (TAG)n Simple_repeat Simple_repeat 3 38 0 1577 164 72 102 chr1 72682994 72683124 -209510540 - Charlie4a DNA MER1_type -1809 152 20 266 275 14 0 chr1 72683215 72683284 -209510380 - tRNA-Lys-AAG tRNA tRNA -6 70 1 2226 96 0 7 chr1 72683573 72683864 -209509800 - AluSc SINE Alu -20 289 1 1332 163 9 9 chr1 72683964 72684212 -209509452 + AluJb SINE Alu 58 305 0 772 284 149 3 chr1 72684826 72685154 -209508510 - L2 LINE L2 -4 3309 2934 270 258 43 21 chr1 72685364 72685457 -209508207 - MER34 LTR ERV1 -2 540 446 946 297 93 17 chr1 72688628 72689049 -209504615 - MLT1J LTR MaLR -20 491 39 387 0 0 0 chr1 72689318 72689361 -209504303 + (TG)n Simple_repeat Simple_repeat 2 44 0 1749 169 27 7 chr1 72689976 72690272 -209503392 - AluJo SINE Alu -10 302 1 923 281 106 32 chr1 72690701 72691163 -209502501 - MLT1J LTR MaLR -7 504 9 183 246 115 0 chr1 72691272 72691333 -209502331 - MIR3 SINE MIR -28 180 113 1109 174 22 22 chr1 72691360 72691584 -209502080 - L1MB8 LINE L1 -11 6167 5944 1795 265 38 25 chr1 72692054 72692583 -209501081 + MARNA DNA Mariner 28 563 -23 297 268 48 95 chr1 72693196 72693364 -209500300 + MIR SINE MIR 89 248 -14 425 300 80 7 chr1 72693766 72693916 -209499748 - L2 LINE L2 -5 3267 3107 1606 167 43 138 chr1 72693928 72694347 -209499317 + MER47B DNA MER2_type 1 379 -39 267 299 91 46 chr1 72694398 72694595 -209499069 + MIR SINE MIR 2 207 -55 306 276 92 31 chr1 72694857 72694986 -209498678 + MIR SINE MIR 17 153 -55 330 304 154 51 chr1 72695445 72695738 -209497926 - L2 LINE L2 -15 3257 2935 2281 87 0 3 chr1 72696023 72696309 -209497355 + AluSc SINE Alu 1 285 -24 2361 84 0 17 chr1 72696370 72696669 -209496995 + AluSq SINE Alu 1 294 -19 219 304 108 20 chr1 72697376 72697478 -209496186 - L2 LINE L2 -1 3271 3161 198 0 0 0 chr1 72697660 72697682 -209495982 + (T)n Simple_repeat Simple_repeat 1 22 0 1555 198 73 29 chr1 72697693 72698103 -209495561 - MLT1C LTR MaLR -6 461 34 507 332 47 10 chr1 72698317 72698510 -209495154 + MIR SINE MIR 6 205 -57 445 253 163 34 chr1 72698517 72698695 -209494969 - MIR SINE MIR -41 221 21 189 268 0 0 chr1 72698967 72699008 -209494656 + MIR SINE MIR 7 47 -215 536 282 58 17 chr1 72699104 72699278 -209494386 + MIR SINE MIR 54 234 -28 373 250 144 38 chr1 72699303 72699435 -209494229 - MIR SINE MIR -92 170 25 340 244 96 37 chr1 72699660 72699795 -209493869 - MIR SINE MIR -10 252 110 1782 75 9 0 chr1 72699951 72700179 -209493485 - AluSg/x SINE Alu 0 312 83 204 257 71 0 chr1 72700267 72700337 -209493327 - MER91C DNA MER1_type -34 106 32 244 196 36 0 chr1 72700630 72700686 -209492978 - MER116 DNA Mariner -6 74 17 483 275 21 52 chr1 72701358 72701551 -209492113 - MIR SINE MIR -8 254 68 1568 103 33 110 chr1 72701860 72702160 -209491504 + AluSx SINE Alu 35 311 -1 830 261 26 34 chr1 72702415 72702679 -209490985 - MIR SINE MIR 0 262 1 260 358 98 15 chr1 72703920 72704124 -209489540 + L2 LINE L2 2633 2853 -461 235 240 170 20 chr1 72704306 72704406 -209489258 - MIR SINE MIR -45 217 103 313 318 156 31 chr1 72704429 72704621 -209489043 - MIR SINE MIR -27 235 20 181 354 71 0 chr1 72705525 72705624 -209488040 + L2 LINE L2 3192 3297 -16 2028 124 0 0 chr1 72706458 72706725 -209486939 - AluSx SINE Alu -45 267 1 2046 159 5 19 chr1 72710603 72710981 -209482683 - L1MB4 LINE L1 -11 6169 5797 2533 177 23 48 chr1 72711114 72711674 -209481990 - L1MB2 LINE L1 -3 6168 5623 308 286 31 10 chr1 72714644 72714742 -209478922 + MIR SINE MIR 30 129 -79 643 279 76 0 chr1 72714776 72714973 -209478691 - MIR SINE MIR -4 258 47 317 276 79 8 chr1 72715755 72715882 -209477782 + MIR SINE MIR 57 192 -70 275 260 40 10 chr1 72716869 72716969 -209476695 - L3 LINE CR1 -193 1384 1282 2109 111 0 39 chr1 72717131 72717437 -209476227 + AluSg SINE Alu 1 294 -16 222 335 48 48 chr1 72717768 72717956 -209475708 - L3 LINE CR1 -374 1203 1016 1889 121 3 101 chr1 72718064 72718239 -209475425 - AluSp SINE Alu -8 305 177 567 74 0 0 chr1 72718239 72718320 -209475344 + (TG)n Simple_repeat Simple_repeat 2 82 0 1889 121 3 101 chr1 72718320 72718482 -209475182 - AluSp SINE Alu -136 177 1 187 260 40 60 chr1 72718543 72718643 -209475021 + MIR SINE MIR 56 153 -109 1167 205 31 16 chr1 72718644 72718898 -209474766 - MIR SINE MIR -1 261 4 269 263 83 45 chr1 72720983 72721139 -209472525 + L2 LINE L2 3080 3241 -31 748 269 54 0 chr1 72721573 72721794 -209471870 - MIR SINE MIR 0 262 31 266 259 80 27 chr1 72721955 72722067 -209471597 - MIR SINE MIR -117 145 28 213 203 31 0 chr1 72722615 72722679 -209470985 + MIR SINE MIR 78 143 -65 336 255 47 9 chr1 72724757 72724863 -209468801 - MER103 DNA DNA -8 158 49 993 288 84 17 chr1 72725105 72725571 -209468093 - L3 LINE CR1 -293 1284 788 407 328 0 0 chr1 72726152 72726268 -209467396 + L2 LINE L2 3153 3268 -4 264 298 24 0 chr1 72727266 72727350 -209466314 - L2 LINE L2 0 3272 3187 207 275 65 36 chr1 72728202 72728340 -209465324 - L2 LINE L2 -222 3050 2909 364 293 77 20 chr1 72729090 72729255 -209464409 - MIR3 SINE MIR -67 141 9 209 333 90 18 chr1 72729246 72729357 -209464307 - MIR SINE MIR -139 123 5 * 183 235 0 0 chr1 72729769 72729820 -209463844 + A-rich Low_complexity Low_complexity 1 51 0 390 293 34 65 chr1 72730941 72731323 -209462341 - L1ME LINE L1 -487 5634 5265 2372 85 3 0 chr1 72731361 72731654 -209462010 + AluSq SINE Alu 1 294 -19 447 19 0 0 chr1 72731657 72731709 -209461955 + (TA)n Simple_repeat Simple_repeat 1 52 0 208 180 20 0 chr1 72731901 72731951 -209461713 + (TA)n Simple_repeat Simple_repeat 1 51 0 340 291 63 27 chr1 72731966 72732189 -209461475 - L1ME LINE L1 -1120 5026 4796 2011 110 190 14 chr1 72732490 72732854 -209460810 - MSTA LTR MaLR 0 428 1 313 228 195 16 chr1 72733356 72733479 -209460185 + MIR SINE MIR 49 193 -69 196 257 162 0 chr1 72733630 72733704 -209459960 - L2 LINE L2 -1 3312 3227 296 319 0 0 chr1 72733931 72734022 -209459642 + MIR3 SINE MIR 108 198 -10 251 382 22 29 chr1 72734635 72734771 -209458893 - MIR SINE MIR -69 139 5 25 31 0 0 chr1 72735296 72735328 -209458336 + AT_rich Low_complexity Low_complexity 1 32 0 983 115 25 19 chr1 72735328 72735485 -209458179 + L1PA10 LINE L1 6011 6168 0 24 0 0 0 chr1 72739025 72739049 -209454615 + AT_rich Low_complexity Low_complexity 1 24 0 686 160 17 8 chr1 72739049 72739157 -209454507 + AluJb SINE Alu 176 287 -25 198 0 0 0 chr1 72739157 72739179 -209454485 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 478 219 98 24 chr1 72739189 72739353 -209454311 - MIR SINE MIR -14 248 73 1808 170 0 35 chr1 72739368 72739680 -209453984 - AluJb SINE Alu -11 301 1 245 182 14 203 chr1 72740051 72740155 -209453509 - MER103 DNA DNA 0 166 96 2083 147 13 0 chr1 72740155 72740469 -209453195 + 7SLRNA srpRNA srpRNA 3 320 0 245 182 14 203 chr1 72740469 72740512 -209453152 - MER103 DNA DNA -70 96 47 5211 137 26 35 chr1 72740523 72740972 -209452692 + L1MA9 LINE L1 5335 5786 -526 324 0 0 0 chr1 72740972 72741008 -209452656 + (TG)n Simple_repeat Simple_repeat 2 37 0 5211 137 26 35 chr1 72741008 72741513 -209452151 + L1MA9 LINE L1 5786 6281 -31 590 296 56 5 chr1 72741625 72741841 -209451823 + MIR SINE MIR 7 233 -29 1050 218 31 0 chr1 72741896 72742121 -209451543 - L1MB2 LINE L1 -26 6145 5914 376 245 102 0 chr1 72742642 72742740 -209450924 + MIR3 SINE MIR 53 160 -48 21 0 0 0 chr1 72742746 72742767 -209450897 + AT_rich Low_complexity Low_complexity 1 21 0 2440 81 3 0 chr1 72742871 72743169 -209450495 + AluSp SINE Alu 1 299 -14 2410 103 22 30 chr1 72743175 72743542 -209450122 - THE1B LTR MaLR 0 364 1 313 315 97 29 chr1 72743594 72743934 -209449730 - L2 LINE L2 -686 2628 2266 321 281 166 23 chr1 72745157 72745374 -209448290 + MIR SINE MIR 3 250 -12 200 222 0 0 chr1 72745643 72745679 -209447985 + (ATG)n Simple_repeat Simple_repeat 3 38 0 477 193 233 7 chr1 72745726 72745876 -209447788 - MIR SINE MIR -46 216 33 326 304 32 8 chr1 72746298 72746423 -209447241 - MIR SINE MIR -85 177 50 579 318 20 64 chr1 72747627 72747923 -209445741 + L2 LINE L2 2990 3272 0 184 250 100 38 chr1 72748774 72748854 -209444810 - MIR SINE MIR -95 167 83 751 192 7 40 chr1 72748933 72749084 -209444580 - MLT1G1 LTR MaLR -15 575 430 2181 151 22 6 chr1 72749084 72749441 -209444223 - MLT1A1 LTR MaLR 0 365 3 7293 206 62 59 chr1 72749449 72750912 -209442752 - MLT1A1-int LTR MaLR -7 1728 271 4916 99 10 14 chr1 72750912 72751606 -209442058 - LTR8 LTR ERV1 0 691 1 7293 206 62 59 chr1 72751606 72751680 -209441984 - MLT1A1-int LTR MaLR -1464 271 199 2219 100 7 23 chr1 72751680 72751979 -209441685 - AluSp SINE Alu -19 294 1 7293 206 62 59 chr1 72751979 72752163 -209441501 - MLT1A1-int LTR MaLR -1536 199 1 1750 180 45 20 chr1 72752164 72752470 -209441194 - MLT1A1 LTR MaLR 0 365 47 2425 104 0 0 chr1 72752470 72752777 -209440887 - AluSq SINE Alu -6 307 1 1750 180 45 20 chr1 72752777 72752826 -209440838 - MLT1A1 LTR MaLR -318 47 1 1134 237 91 43 chr1 72752841 72753258 -209440406 - MLT1G1 LTR MaLR -156 439 3 263 266 0 0 chr1 72753261 72753325 -209440339 - L1MB7 LINE L1 -234 5950 5887 531 199 83 0 chr1 72753384 72753518 -209440146 - MIR SINE MIR -62 146 39 242 149 21 0 chr1 72753601 72753648 -209440016 - L2 LINE L2 -4 3309 3262 1343 291 54 57 chr1 72754820 72755289 -209438375 - L1MEd LINE L1 -5417 702 234 2360 101 0 3 chr1 72755289 72755597 -209438067 - AluSp SINE Alu -2 311 5 1343 291 54 57 chr1 72755597 72755793 -209437871 - L1MEd LINE L1 -5885 234 39 456 276 68 64 chr1 72756097 72756347 -209437317 + MLT1K LTR MaLR 126 376 -212 860 159 93 7 chr1 72756429 72756580 -209437084 - FRAM SINE Alu -13 163 1 1725 127 0 60 chr1 72756593 72756876 -209436788 - AluSq SINE Alu -17 296 31 3414 134 23 55 chr1 72756888 72757508 -209436156 - LTR9 LTR ERV1 -12 600 1 253 200 0 0 chr1 72757508 72757542 -209436122 - AluSq SINE Alu -268 34 1 2460 88 0 0 chr1 72757758 72758066 -209435598 - AluSg1 SINE Alu 0 309 2 468 247 6 123 chr1 72758319 72758397 -209435267 + L2 LINE L2 3118 3167 -105 1927 155 17 0 chr1 72758397 72758688 -209434976 - AluJb SINE Alu -16 296 1 468 247 6 123 chr1 72758688 72758779 -209434885 + L2 LINE L2 3167 3267 -5 388 279 149 24 chr1 72759431 72759639 -209434025 + MIR SINE MIR 23 256 -6 204 231 0 0 chr1 72760300 72760339 -209433325 + CT-rich Low_complexity Low_complexity 1 39 0 600 301 53 15 chr1 72760405 72760611 -209433053 - MIR SINE MIR -2 260 47 353 306 28 7 chr1 72760877 72761021 -209432643 - MER103 DNA DNA -7 159 13 403 250 11 0 chr1 72761082 72761174 -209432490 + MER5A DNA MER1_type 9 101 -88 382 232 45 102 chr1 72761602 72761617 -209432047 - LTR33A LTR ERVL -356 167 153 1853 99 0 4 chr1 72761617 72761859 -209431805 - AluSx SINE Alu -71 241 1 382 232 45 102 chr1 72761859 72762020 -209431644 - LTR33A LTR ERVL -370 153 1 378 0 0 0 chr1 72762740 72762782 -209430882 + (CCTG)n Simple_repeat Simple_repeat 2 43 0 330 243 88 113 chr1 72762819 72763058 -209430606 - L2 LINE L2 -60 3212 2980 1948 121 10 23 chr1 72763069 72763374 -209430290 + AluSx SINE Alu 1 301 -11 180 0 0 0 chr1 72763383 72763403 -209430261 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 656 152 184 13 chr1 72763403 72763561 -209430103 + MER53 DNA DNA 1 185 -4 224 235 13 111 chr1 72763976 72764129 -209429535 - MIR3 SINE MIR -65 143 6 2433 146 33 21 chr1 72764131 72764556 -209429108 + MSTB1 LTR MaLR 3 432 0 453 84 0 158 chr1 72764896 72764991 -209428673 - MADE1 DNA Mariner 0 80 1 2456 166 37 20 chr1 72765104 72765561 -209428103 + MLT1C LTR MaLR 3 467 0 575 304 78 0 chr1 72765572 72765802 -209427862 + L2 LINE L2 2119 2366 -948 1740 238 104 4 chr1 72765838 72766256 -209427408 + MLT2B1 LTR ERVL 1 376 -178 234 0 0 0 chr1 72766256 72766282 -209427382 + (TC)n Simple_repeat Simple_repeat 2 27 0 531 45 0 0 chr1 72766283 72766349 -209427315 + (TG)n Simple_repeat Simple_repeat 2 67 0 1740 238 104 4 chr1 72766349 72766380 -209427284 + MLT2B1 LTR ERVL 375 554 0 612 315 96 58 chr1 72766383 72766832 -209426832 + L2 LINE L2 2393 2823 -490 1901 151 3 0 chr1 72766832 72767116 -209426548 - AluSx SINE Alu -19 293 9 612 315 96 58 chr1 72767116 72767522 -209426142 + L2 LINE L2 2823 3310 -3 2266 97 9 34 chr1 72767737 72768057 -209425607 - AluSx SINE Alu 0 312 1 876 256 87 36 chr1 72768118 72768427 -209425237 + LTR16C LTR ERVL 152 476 -15 245 354 80 0 chr1 72768731 72768844 -209424820 + MIR3 SINE MIR 82 203 -5 694 206 0 22 chr1 72768914 72769050 -209424614 + MER69 DNA AcHobo 1 133 -1093 2388 95 0 0 chr1 72769090 72769386 -209424278 - AluSp SINE Alu -17 296 1 2415 104 0 0 chr1 72769406 72769715 -209423949 - AluSg SINE Alu -1 309 1 470 269 103 0 chr1 72770158 72770314 -209423350 - MIR SINE MIR -26 236 65 855 68 8 26 chr1 72770326 72770443 -209423221 - AluSg/x SINE Alu -18 292 178 2191 107 4 0 chr1 72770582 72770961 -209422703 - AluSx SINE Alu 0 380 1 594 203 0 0 chr1 72771023 72771166 -209422498 + (TCCA)n Simple_repeat Simple_repeat 4 146 0 780 157 18 0 chr1 72771191 72771357 -209422307 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 1253 149 25 51 chr1 72771600 72771835 -209421829 + AluJo SINE Alu 1 229 -83 364 216 117 12 chr1 72771849 72771976 -209421688 + MIR SINE MIR 27 161 -65 1023 303 14 23 chr1 72773332 72773744 -209419920 - LTR16C LTR ERVL -11 480 34 285 229 14 0 chr1 72773767 72773837 -209419827 + L2 LINE L2 3202 3272 0 207 194 32 32 chr1 72773954 72774016 -209419648 - MIR SINE MIR -29 233 172 269 291 12 0 chr1 72774080 72774166 -209419498 - MIR SINE MIR -95 167 81 296 194 108 21 chr1 72774214 72774307 -209419357 - MER5A DNA MER1_type -80 109 9 243 170 0 0 chr1 72774509 72774556 -209419108 + CT-rich Low_complexity Low_complexity 3 49 0 306 301 0 44 chr1 72774634 72774747 -209418917 - LTR67 LTR ERVL -22 535 428 1045 63 0 0 chr1 72774766 72774893 -209418771 - MLT2A2 LTR ERVL 0 453 327 209 184 0 0 chr1 72775410 72775448 -209418216 + CT-rich Low_complexity Low_complexity 3 40 0 845 95 0 0 chr1 72776068 72776173 -209417491 + AluSq/x SINE Alu 1 105 -208 189 0 0 0 chr1 72776190 72776211 -209417453 + (A)n Simple_repeat Simple_repeat 1 21 0 188 287 130 28 chr1 72776256 72776364 -209417300 + L2 LINE L2 3154 3272 0 2220 119 0 3 chr1 72776429 72776731 -209416933 + AluSx SINE Alu 1 301 -11 297 165 25 13 chr1 72777155 72777234 -209416430 + GA-rich Low_complexity Low_complexity 2 81 0 225 355 0 0 chr1 72778759 72778835 -209414829 - MIR SINE MIR -31 231 156 7611 171 32 20 chr1 72778879 72779840 -209413824 - L1MA3 LINE L1 -1 7723 6775 1851 163 3 7 chr1 72779840 72780141 -209413523 - AluJb SINE Alu -12 300 1 7611 171 32 20 chr1 72780141 72780561 -209413103 - L1MA3 LINE L1 -949 6775 6361 2089 116 0 7 chr1 72780561 72780867 -209412797 - AluSx SINE Alu 0 304 1 7611 171 32 20 chr1 72780867 72782542 -209411122 - L1MA3 LINE L1 -1363 6361 4563 2494 80 0 0 chr1 72782542 72782842 -209410822 - AluSc SINE Alu -9 300 1 7611 171 32 20 chr1 72782842 72782915 -209410749 - L1MA3 LINE L1 -3161 4563 4492 958 126 12 6 chr1 72782947 72783114 -209410550 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 1154 163 0 41 chr1 72783114 72783310 -209410354 - AluJb SINE Alu -34 278 91 1174 63 0 0 chr1 72783310 72783453 -209410211 - MLT2A2 LTR ERVL -310 143 1 662 140 96 7 chr1 72783453 72783589 -209410075 + L1 LINE L1 3137 3284 -4281 832 181 0 0 chr1 72783640 72783767 -209409897 + FLAM_C SINE Alu 1 127 -16 928 141 19 18 chr1 72783768 72783933 -209409731 - MLT2A2 LTR ERVL -144 309 152 15293 132 42 5 chr1 72783933 72786235 -209407429 - L1MA3 LINE L1 -5134 2431 45 3273 140 48 0 chr1 72786273 72786794 -209406870 + Tigger1 DNA MER2_type 307 852 -1566 334 256 6 12 chr1 72786796 72786964 -209406700 + GA-rich Low_complexity Low_complexity 1 167 0 1680 157 3 7 chr1 72787052 72787358 -209406306 + L1 LINE L1 5829 6133 -1432 715 271 21 16 chr1 72788458 72788646 -209405018 - MIR SINE MIR -72 190 2 1271 216 99 110 chr1 72789285 72789490 -209404174 + MLT1H LTR MaLR 7 213 -336 2076 106 14 3 chr1 72789490 72789773 -209403891 - AluSg1 SINE Alu -23 286 1 1271 216 99 110 chr1 72789773 72790103 -209403561 + MLT1H LTR MaLR 213 536 -13 518 253 134 0 chr1 72790515 72790701 -209402963 + MIR SINE MIR 46 256 -6 224 237 129 32 chr1 72791384 72791477 -209402187 - MIR SINE MIR -1 261 160 25 0 0 0 chr1 72791801 72791826 -209401838 + AT_rich Low_complexity Low_complexity 1 25 0 218 330 96 9 chr1 72793375 72793490 -209400174 + MIR SINE MIR 20 144 -118 537 199 235 31 chr1 72793553 72793749 -209399915 + MIR SINE MIR 9 244 -18 3951 102 26 8 chr1 72793794 72794067 -209399597 - L1MA5A LINE L1 0 6297 6030 1838 161 6 16 chr1 72794067 72794378 -209399286 + AluJo SINE Alu 1 308 -4 3951 102 26 8 chr1 72794378 72794715 -209398949 - L1MA5A LINE L1 -267 6030 5676 389 291 40 45 chr1 72795243 72795442 -209398222 + MIR SINE MIR 16 213 -49 260 263 42 21 chr1 72795461 72795556 -209398108 + MIR SINE MIR 37 133 -75 1522 287 106 20 chr1 72795556 72795835 -209397829 + MLT2F LTR ERVL 9 263 -400 3292 68 45 2 chr1 72795835 72795875 -209397789 - MLT2A1 LTR ERVL 0 444 407 207 0 0 0 chr1 72795875 72795898 -209397766 + (TA)n Simple_repeat Simple_repeat 1 23 0 3292 68 45 2 chr1 72795898 72796283 -209397381 - MLT2A1 LTR ERVL -37 407 1 1522 287 106 20 chr1 72796283 72796606 -209397058 + MLT2F LTR ERVL 263 663 0 954 287 129 3 chr1 72796902 72797275 -209396389 + L2 LINE L2 2533 2952 -362 418 263 93 21 chr1 72797547 72797740 -209395924 - MIR SINE MIR -46 216 18 1148 141 0 6 chr1 72797973 72798136 -209395528 + AluSg/x SINE Alu 132 293 -19 2718 131 55 28 chr1 72798183 72798416 -209395248 + MER31A LTR ERV1 1 226 -259 2746 143 7 2 chr1 72798416 72798842 -209394822 - MSTA LTR MaLR 0 428 1 2718 131 55 28 chr1 72798842 72799080 -209394584 + MER31A LTR ERV1 226 485 0 274 263 53 0 chr1 72799628 72799704 -209393960 - MIR SINE MIR -66 196 117 1038 179 0 0 chr1 72799740 72799908 -209393756 - FRAM SINE Alu -4 172 5 226 333 11 21 chr1 72800074 72800112 -209393552 + MIR SINE MIR 159 196 -66 2595 106 11 0 chr1 72800112 72800472 -209393192 + THE1B LTR MaLR 1 364 0 226 333 11 21 chr1 72800472 72800526 -209393138 + MIR SINE MIR 196 250 -12 684 253 73 16 chr1 72800538 72800783 -209392881 + MIR SINE MIR 4 262 0 2401 137 23 55 chr1 72800886 72801079 -209392585 + MSTB LTR MaLR 2 200 -226 1896 168 3 3 chr1 72801079 72801371 -209392293 + AluJb SINE Alu 1 292 -20 2401 137 23 55 chr1 72801371 72801616 -209392048 + MSTB LTR MaLR 200 426 0 259 232 0 0 chr1 72802532 72802588 -209391076 + L2 LINE L2 3258 3313 0 1801 179 0 19 chr1 72803560 72803878 -209389786 - AluJo SINE Alu 0 312 1 402 119 0 0 chr1 72803961 72804020 -209389644 + AluS SINE Alu 2 60 -258 907 94 14 2 chr1 72804212 72804502 -209389162 + AluSx SINE Alu 1 336 0 182 316 60 8 chr1 72804570 72804687 -209388977 + L3 LINE CR1 1013 1135 -442 181 311 262 18 chr1 72804920 72805145 -209388519 + L3 LINE CR1 1143 1422 -155 1103 242 124 10 chr1 72805302 72805608 -209388056 + LTR16C LTR ERVL 151 491 0 228 295 95 19 chr1 72805623 72805728 -209387936 + MIR SINE MIR 24 136 -72 1711 198 0 10 chr1 72805811 72806119 -209387545 - AluJb SINE Alu -7 305 1 234 278 9 70 chr1 72806627 72806742 -209386922 + L2 LINE L2 3158 3265 -7 197 331 189 0 chr1 72807275 72807402 -209386262 + MIR SINE MIR 2 152 -110 26 0 0 0 chr1 72807482 72807508 -209386156 + AT_rich Low_complexity Low_complexity 1 26 0 2749 104 3 0 chr1 72807706 72808080 -209385584 - THE1C LTR MaLR 0 375 1 1364 184 34 0 chr1 72808080 72808314 -209385350 + MLT1D LTR MaLR 4 245 -260 666 113 274 0 chr1 72808323 72808447 -209385217 + MLT1D LTR MaLR 348 505 0 474 264 117 55 chr1 72808554 72808974 -209384690 - MLT1J1 LTR MaLR 0 446 1 397 293 32 16 chr1 72808990 72809113 -209384551 + L2 LINE L2 3147 3271 -1 261 313 20 48 chr1 72809152 72809299 -209384365 + MIR SINE MIR 74 216 -46 2410 90 0 3 chr1 72809617 72809917 -209383747 + AluSx SINE Alu 1 299 -13 352 257 27 0 chr1 72810107 72810181 -209383483 - MER81 DNA DNA -36 78 3 347 333 28 0 chr1 72810250 72810388 -209383276 + MIR SINE MIR 68 213 -49 25 0 0 0 chr1 72811229 72811254 -209382410 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr1 72811409 72811437 -209382227 + (T)n Simple_repeat Simple_repeat 1 28 0 737 272 37 69 chr1 72813155 72813504 -209380160 - MER102b DNA MER1_type -3 338 1 196 294 94 12 chr1 72813613 72813698 -209379966 + MIR SINE MIR 21 112 -150 365 341 58 6 chr1 72813800 72813973 -209379691 - MIR SINE MIR -60 202 21 360 0 0 0 chr1 72814023 72814063 -209379601 + (CAT)n Simple_repeat Simple_repeat 2 41 0 2469 74 0 0 chr1 72814277 72814575 -209379089 - AluY SINE Alu -13 298 1 645 213 12 19 chr1 72814580 72814597 -209379067 - L1MA10 LINE L1 0 6334 6318 3448 213 44 13 chr1 72814597 72815436 -209378228 - L1ME1 LINE L1 -6 6160 5296 759 247 72 0 chr1 72815449 72815672 -209377992 - L1ME1 LINE L1 -1109 5037 4799 968 230 34 10 chr1 72815689 72815980 -209377684 - L1ME1 LINE L1 -1589 4557 4260 839 200 10 41 chr1 72816006 72816201 -209377463 + AluJo SINE Alu 1 189 -123 735 236 113 10 chr1 72816370 72816573 -209377091 + MIR SINE MIR 38 261 -1 25 0 0 0 chr1 72817628 72817653 -209376011 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 72818311 72818334 -209375330 + AT_rich Low_complexity Low_complexity 1 23 0 830 325 65 24 chr1 72818909 72819115 -209374549 + L2 LINE L2 2930 3159 -154 2228 118 0 0 chr1 72819115 72819411 -209374253 - AluSq SINE Alu -17 296 1 830 325 65 24 chr1 72819411 72819573 -209374091 + L2 LINE L2 3159 3313 0 23 24 0 24 chr1 72819660 72819676 -209373988 + AT_rich Low_complexity Low_complexity 1 16 -24 201 44 22 44 chr1 72819676 72819721 -209373943 + (TAAAA)n Simple_repeat Simple_repeat 4 47 0 23 24 0 24 chr1 72819721 72819745 -209373919 + AT_rich Low_complexity Low_complexity 16 40 0 26 30 0 0 chr1 72819859 72819892 -209373772 + AT_rich Low_complexity Low_complexity 1 33 0 6414 88 27 7 chr1 72820065 72821196 -209372468 - L1PA13 LINE L1 0 6163 4979 2349 78 3 43 chr1 72821196 72821518 -209372146 - AluY SINE Alu -2 309 1 6414 88 27 7 chr1 72821518 72822203 -209371461 - L1PA13 LINE L1 -1184 4979 4309 295 342 42 13 chr1 72823268 72823505 -209370159 - L2 LINE L2 -1257 2057 1814 851 120 21 14 chr1 72823555 72823697 -209369967 + MLT1A1 LTR MaLR 15 157 -208 1208 130 0 6 chr1 72823697 72823874 -209369790 + AluSg/x SINE Alu 137 312 0 1098 149 103 5 chr1 72823875 72824070 -209369594 + MLT1A1 LTR MaLR 152 365 0 1412 286 41 10 chr1 72824621 72825009 -209368655 - MLT1J2 LTR MaLR 0 450 51 191 283 50 17 chr1 72825035 72825095 -209368569 + L2 LINE L2 3207 3268 -4 486 307 98 33 chr1 72826393 72826608 -209367056 + MIR SINE MIR 18 246 -16 2066 144 3 0 chr1 72827409 72827715 -209365949 - AluSx SINE Alu -5 307 1 616 277 199 22 chr1 72827722 72828133 -209365531 + L2 LINE L2 2827 3310 -3 556 237 9 16 chr1 72828178 72828315 -209365349 - MIR SINE MIR -64 144 32 328 304 29 0 chr1 72828814 72828916 -209364748 + MIR SINE MIR 17 121 -87 729 97 15 1 chr1 72828954 72829080 -209364584 + L1MA2 LINE L1 6018 6154 -150 445 225 11 0 chr1 72829134 72829223 -209364441 - MIR SINE MIR -71 137 48 1001 113 0 0 chr1 72829228 72829361 -209364303 + L1MA2 LINE L1 6167 6299 -5 24 32 0 0 chr1 72829364 72829395 -209364269 + AT_rich Low_complexity Low_complexity 1 31 0 378 259 94 97 chr1 72830066 72830259 -209363405 - L2 LINE L2 -338 2976 2783 2317 82 0 50 chr1 72830259 72830577 -209363087 + AluSx SINE Alu 1 302 -10 378 259 94 97 chr1 72830577 72830723 -209362941 - L2 LINE L2 -531 2783 2638 331 271 88 53 chr1 72831760 72831922 -209361742 - MIR SINE MIR -62 146 20 301 315 43 0 chr1 72832105 72832197 -209361467 + L2 LINE L2 3201 3296 -17 314 218 26 13 chr1 72832400 72832478 -209361186 + MER103 DNA DNA 3 81 -85 1004 252 78 3 chr1 72832903 72833185 -209360479 + LTR16A LTR ERVL 148 450 0 1607 290 93 19 chr1 72833185 72834067 -209359597 + HERV16 LTR ERVL 1 996 -4000 295 330 29 0 chr1 72834391 72834494 -209359170 + HERV16 LTR ERVL 1361 1466 -3530 538 329 38 5 chr1 72834642 72834855 -209358809 + ERVL LTR ERVL 4747 4966 -798 477 330 34 30 chr1 72834882 72835179 -209358485 + ERVL LTR ERVL 5030 5327 -437 1113 303 25 25 chr1 72835356 72835797 -209357867 + LTR16A LTR ERVL 6 437 -13 225 277 89 47 chr1 72836017 72836230 -209357434 + L1MEc LINE L1 1513 1734 -4662 677 274 0 0 chr1 72836668 72836803 -209356861 + FLAM_A SINE Alu 2 136 -6 776 118 11 48 chr1 72836824 72836990 -209356674 + (GAAA)n Simple_repeat Simple_repeat 1 161 -19 2156 105 3 30 chr1 72836990 72837295 -209356369 + AluSc SINE Alu 8 304 -5 776 118 11 48 chr1 72837295 72837315 -209356349 + (GAAA)n Simple_repeat Simple_repeat 161 180 0 771 298 77 14 chr1 72837344 72837783 -209355881 + L1MEc LINE L1 2223 2689 -3526 185 184 20 82 chr1 72838119 72838168 -209355496 + L2 LINE L2 3222 3267 -5 732 279 19 37 chr1 72838468 72838737 -209354927 + L1ME LINE L1 5556 5819 -302 2373 67 0 0 chr1 72839045 72839329 -209354335 - AluSc SINE Alu -14 295 12 2241 105 3 13 chr1 72839876 72840208 -209353456 - AluSp SINE Alu 0 313 1 376 286 36 0 chr1 72841124 72841236 -209352428 + MIR SINE MIR 73 188 -74 261 292 124 9 chr1 72841388 72841501 -209352163 + L2 LINE L2 3132 3257 -15 639 248 35 40 chr1 72841628 72842008 -209351656 - MLT1J2 LTR MaLR -8 422 25 875 252 108 40 chr1 72842114 72842467 -209351197 - L2 LINE L2 0 3313 2937 486 328 57 49 chr1 72842487 72842731 -209350933 - L2 LINE L2 -1 3271 3026 959 248 137 38 chr1 72842790 72843149 -209350515 - MLT1H1 LTR MaLR -8 547 138 2336 89 13 0 chr1 72843149 72843451 -209350213 + AluSp SINE Alu 1 306 -7 959 248 137 38 chr1 72843451 72843515 -209350149 - MLT1H1 LTR MaLR -417 138 82 1418 146 41 0 chr1 72843516 72843637 -209350027 + AluJo SINE Alu 1 136 -176 234 0 0 0 chr1 72843637 72843663 -209350001 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1418 146 41 0 chr1 72843663 72843761 -209349903 + AluJo SINE Alu 136 229 -83 489 196 154 28 chr1 72843906 72844049 -209349615 - MER117 DNA MER1_type -34 163 3 295 297 102 23 chr1 72844991 72845119 -209348545 + MIR SINE MIR 47 184 -78 256 253 91 10 chr1 72845957 72846056 -209347608 - L2 LINE L2 -14 3258 3152 452 273 71 38 chr1 72846193 72846500 -209347164 - MLT1J1 LTR MaLR -4 442 81 900 249 60 24 chr1 72846900 72847149 -209346515 - MIR SINE MIR -3 259 2 479 274 24 96 chr1 72847195 72847403 -209346261 - MIR SINE MIR -14 248 56 246 283 0 11 chr1 72847585 72847711 -209345953 + MIR3 SINE MIR 3 164 -98 399 288 25 28 chr1 72847776 72847933 -209345731 - MIR3 SINE MIR -49 159 2 562 269 73 36 chr1 72848252 72848471 -209345193 + L3 LINE CR1 758 984 -593 3219 161 18 18 chr1 72848478 72848993 -209344671 + MLT2B2 LTR ERVL 1 515 0 895 95 14 2 chr1 72849022 72849300 -209344364 + AluSx SINE Alu 1 322 0 183 277 21 0 chr1 72849308 72849355 -209344309 + MIR SINE MIR 54 101 -107 220 308 77 26 chr1 72849368 72849485 -209344179 + L3 LINE CR1 1013 1135 -442 183 305 42 32 chr1 72849520 72849615 -209344049 - MIR SINE MIR -19 243 148 245 267 276 31 chr1 72849719 72849944 -209343720 + L3 LINE CR1 1143 1422 -155 1083 245 124 10 chr1 72850101 72850407 -209343257 + LTR16C LTR ERVL 151 491 0 264 286 95 19 chr1 72850422 72850527 -209343137 + MIR SINE MIR 24 136 -72 1706 194 0 10 chr1 72850610 72850914 -209342750 - AluJb SINE Alu -11 301 1 267 278 9 70 chr1 72851422 72851537 -209342127 + L2 LINE L2 3158 3265 -7 211 364 52 40 chr1 72851564 72851814 -209341850 - L2 LINE L2 -172 3100 2848 235 331 189 0 chr1 72852070 72852197 -209341467 + MIR SINE MIR 2 152 -110 26 0 0 0 chr1 72852277 72852303 -209341361 + AT_rich Low_complexity Low_complexity 1 26 0 2896 104 3 0 chr1 72852501 72852875 -209340789 - THE1C LTR MaLR 0 375 1 1379 179 34 0 chr1 72852875 72853109 -209340555 + MLT1D LTR MaLR 4 245 -260 666 113 274 0 chr1 72853118 72853242 -209340422 + MLT1D LTR MaLR 348 505 0 477 264 117 55 chr1 72853349 72853769 -209339895 - MLT1J1 LTR MaLR 0 446 1 437 293 32 16 chr1 72853785 72853908 -209339756 + L2 LINE L2 3147 3271 -1 296 313 20 48 chr1 72853947 72854094 -209339570 + MIR SINE MIR 74 216 -46 2388 90 0 3 chr1 72854412 72854712 -209338952 + AluSx SINE Alu 1 299 -13 350 257 27 0 chr1 72854902 72854976 -209338688 - MER81 DNA DNA -36 78 3 347 333 28 0 chr1 72855045 72855183 -209338481 + MIR SINE MIR 68 213 -49 25 0 0 0 chr1 72856024 72856049 -209337615 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr1 72856204 72856232 -209337432 + (T)n Simple_repeat Simple_repeat 1 28 0 737 272 37 69 chr1 72857950 72858299 -209335365 - MER102b DNA MER1_type -3 338 1 196 294 94 12 chr1 72858408 72858493 -209335171 + MIR SINE MIR 21 112 -150 365 341 58 6 chr1 72858595 72858768 -209334896 - MIR SINE MIR -60 202 21 360 0 0 0 chr1 72858818 72858858 -209334806 + (CAT)n Simple_repeat Simple_repeat 2 41 0 2469 74 0 0 chr1 72859072 72859370 -209334294 - AluY SINE Alu -13 298 1 645 213 12 19 chr1 72859375 72859392 -209334272 - L1MA10 LINE L1 0 6334 6318 3473 212 44 13 chr1 72859392 72860231 -209333433 - L1ME1 LINE L1 -6 6160 5296 759 247 72 0 chr1 72860244 72860467 -209333197 - L1ME1 LINE L1 -1109 5037 4799 1474 208 24 117 chr1 72860484 72860801 -209332863 - L1ME1 LINE L1 -1589 4557 4212 1562 179 10 21 chr1 72860801 72861091 -209332573 + AluJo SINE Alu 1 287 -25 369 0 0 0 chr1 72861093 72861134 -209332530 + (CA)n Simple_repeat Simple_repeat 2 42 0 1474 208 24 117 chr1 72861134 72861424 -209332240 - L1ME1 LINE L1 -1935 4211 4021 2041 138 10 0 chr1 72861424 72861715 -209331949 - AluSx SINE Alu -18 294 1 1474 208 24 117 chr1 72861715 72861819 -209331845 - L1ME1 LINE L1 -2125 4021 3909 3426 268 33 33 chr1 72861825 72863175 -209330489 - L1ME1 LINE L1 -2439 3707 2355 373 130 14 14 chr1 72863175 72863244 -209330420 - L1MA5A LINE L1 -6 6291 6223 3426 268 33 33 chr1 72863244 72863382 -209330282 - L1ME1 LINE L1 -3790 2356 2219 275 346 35 61 chr1 72863589 72863820 -209329844 - HERV16 LTR ERVL -2351 3303 3079 513 284 20 34 chr1 72864121 72864269 -209329395 - HERV16 LTR ERVL -3569 1427 1282 1503 267 102 32 chr1 72864312 72864423 -209329241 - HAL1 LINE L1 -148 2359 2257 225 0 0 0 chr1 72864423 72864448 -209329216 + (CCA)n Simple_repeat Simple_repeat 1 25 0 1503 267 102 32 chr1 72864448 72864983 -209328681 - HAL1 LINE L1 -250 2257 1668 957 221 104 14 chr1 72864986 72865208 -209328456 + MLT1D LTR MaLR 29 270 -235 414 227 128 28 chr1 72865214 72865355 -209328309 + LTR41 LTR ERVL 25 179 -594 2200 114 0 19 chr1 72865501 72865818 -209327846 + AluSx SINE Alu 2 312 0 344 123 37 99 chr1 72866257 72866338 -209327326 + LTR41 LTR ERVL 691 766 -7 3222 219 25 53 chr1 72866347 72867273 -209326391 - L1ME1 LINE L1 -63 6103 5153 1727 75 4 0 chr1 72867273 72867500 -209326164 - L1PA8 LINE L1 -3 6169 5942 3222 219 25 53 chr1 72867500 72867558 -209326106 - L1ME1 LINE L1 -1013 5153 5095 555 56 0 0 chr1 72867558 72867629 -209326035 + (TTCC)n Simple_repeat Simple_repeat 3 73 0 3222 219 25 53 chr1 72867629 72867642 -209326022 - L1ME1 LINE L1 -1071 5095 5083 1578 168 0 4 chr1 72867642 72867886 -209325778 - AluJb SINE Alu -69 243 1 3222 219 25 53 chr1 72867886 72867994 -209325670 - L1ME1 LINE L1 -1083 5083 5024 747 186 0 8 chr1 72868290 72868414 -209325250 - FLAM_A SINE Alu -10 123 1 231 306 45 77 chr1 72868417 72868615 -209325049 - MIR SINE MIR -36 226 34 2202 100 0 27 chr1 72868615 72868914 -209324750 - AluSg SINE Alu -19 291 1 231 306 45 77 chr1 72868914 72868937 -209324727 - MIR SINE MIR -228 34 12 823 247 82 4 chr1 72868939 72869182 -209324482 - MIR SINE MIR 0 262 1 660 298 29 12 chr1 72869798 72870043 -209323621 - MIR SINE MIR -1 261 13 236 167 37 0 chr1 72870061 72870115 -209323549 + (TA)n Simple_repeat Simple_repeat 2 57 0 2035 134 7 7 chr1 72870175 72870473 -209323191 - AluSx SINE Alu -14 298 1 399 260 104 39 chr1 72870568 72870722 -209322942 + MIR3 SINE MIR 45 208 0 216 289 72 24 chr1 72871473 72871556 -209322108 - L2 LINE L2 -18 3254 3168 278 306 0 20 chr1 72871692 72871790 -209321874 + MIR SINE MIR 56 151 -111 201 244 47 35 chr1 72871939 72872025 -209321639 + L2 LINE L2 3161 3247 -25 194 0 39 0 chr1 72872184 72872210 -209321454 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 253 239 14 42 chr1 72872512 72872583 -209321081 - MIR SINE MIR -109 99 31 225 235 129 0 chr1 72872559 72872644 -209321020 + MIR SINE MIR 47 142 -66 * 25 31 0 0 chr1 72873277 72873309 -209320355 + GC_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 72873369 72873394 -209320270 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr1 72873552 72873586 -209320078 + GC_rich Low_complexity Low_complexity 1 34 0 213 216 0 0 chr1 72874021 72874058 -209319606 + (CGTG)n Simple_repeat Simple_repeat 1 37 0 1664 134 103 86 chr1 72875222 72875633 -209318031 - LTR2B LTR ERV1 0 490 1 195 175 0 0 chr1 72876713 72876753 -209316911 + L2 LINE L2 3273 3312 -1 219 331 0 17 chr1 72876890 72877057 -209316607 + MIR SINE MIR 1 227 -35 885 228 5 5 chr1 72877495 72877710 -209315954 - MIR SINE MIR -5 257 43 459 240 95 34 chr1 72879190 72879369 -209314295 + MIR SINE MIR 50 239 -23 524 285 75 5 chr1 72880111 72880325 -209313339 - MIR SINE MIR -14 248 20 327 255 78 0 chr1 72880486 72880588 -209313076 + MIR SINE MIR 143 252 -10 219 326 0 23 chr1 72880913 72880999 -209312665 - L2 LINE L2 0 3272 3189 346 172 50 81 chr1 72881017 72881039 -209312625 - MER112 DNA MER1_type -7 253 232 914 245 125 58 chr1 72881039 72881455 -209312209 + MLT1J1 LTR MaLR 1 444 -2 346 172 50 81 chr1 72881455 72881531 -209312133 - MER112 DNA MER1_type -28 232 158 358 273 40 0 chr1 72882287 72882386 -209311278 - MIR SINE MIR -2 260 158 589 235 13 27 chr1 72882734 72882883 -209310781 - MIR SINE MIR -114 148 2 281 254 232 17 chr1 72883473 72883650 -209310014 + MIR SINE MIR 20 234 -28 2314 85 0 10 chr1 72884353 72884681 -209308983 - AluSx SINE Alu 0 325 1 2676 45 0 3 chr1 72885112 72885428 -209308236 - AluY SINE Alu 0 315 1 542 71 0 12 chr1 72886290 72886375 -209307289 + (TTCC)n Simple_repeat Simple_repeat 1 84 0 2228 124 10 0 chr1 72886375 72886681 -209306983 - AluSq SINE Alu -4 309 1 240 182 0 0 chr1 72887245 72887289 -209306375 - MIR SINE MIR -133 129 86 205 29 59 0 chr1 72887461 72887495 -209306169 + (TA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 72888530 72888552 -209305112 + (T)n Simple_repeat Simple_repeat 1 22 0 377 307 31 43 chr1 72888567 72888730 -209304934 + L2 LINE L2 3103 3263 -9 352 300 190 15 chr1 72890761 72891098 -209302566 - L2 LINE L2 -1 3312 2917 265 184 272 48 chr1 72891143 72891246 -209302418 - MIR SINE MIR -10 252 127 372 243 107 14 chr1 72891328 72891499 -209302165 + MIR SINE MIR 13 192 -63 1083 157 95 0 chr1 72892171 72892381 -209301283 + L1MA4 LINE L1 6067 6296 -4 365 207 0 37 chr1 72892398 72892480 -209301184 - L2 LINE L2 -25 3247 3169 295 198 169 14 chr1 72893030 72893133 -209300531 + MIR SINE MIR 71 182 -67 206 182 254 0 chr1 72893504 72893559 -209300105 + MIR3 SINE MIR 119 187 -21 528 282 7 7 chr1 72895048 72895190 -209298474 + MIR3 SINE MIR 16 157 -51 492 183 200 0 chr1 72895204 72895324 -209298340 + MER5A DNA MER1_type 32 175 -14 267 257 200 21 chr1 72895207 72895347 -209298317 - MER5A DNA MER1_type -23 166 2 * 200 239 0 0 chr1 72896004 72896050 -209297614 - MIR SINE MIR -1 261 216 378 312 8 8 chr1 72896087 72896212 -209297452 - MIR SINE MIR -68 140 16 276 298 33 8 chr1 72896309 72896430 -209297234 - MIR3 SINE MIR -8 200 77 580 262 43 12 chr1 72897047 72897211 -209296453 + MER45A DNA AcHobo 1 169 -9 180 273 0 0 chr1 72897497 72897541 -209296123 + MIR SINE MIR 216 259 -3 414 259 52 0 chr1 72897578 72897694 -209295970 - MIR SINE MIR -41 221 100 569 290 33 22 chr1 72897880 72898063 -209295601 + MIR SINE MIR 60 244 -18 417 296 41 41 chr1 72898526 72898695 -209294969 + L2 LINE L2 3104 3272 0 409 286 171 0 chr1 72899478 72899618 -209294046 + MER5A DNA MER1_type 19 182 -7 231 250 230 45 chr1 72899699 72899899 -209293765 + MIR SINE MIR 23 259 -3 2289 117 0 0 chr1 72900151 72900450 -209293214 - AluSx SINE Alu -13 299 1 1413 181 28 0 chr1 72901675 72901962 -209291702 - MER33 DNA MER1_type 0 324 30 2265 94 0 7 chr1 72902202 72902499 -209291165 - AluSg SINE Alu -15 295 1 1733 179 11 10 chr1 72902525 72902859 -209290805 + L1MD2 LINE L1 5615 5885 -474 1845 222 66 20 chr1 72902872 72903327 -209290337 + L1MD2 LINE L1 5866 6341 -18 22 0 0 0 chr1 72903451 72903473 -209290191 + AT_rich Low_complexity Low_complexity 1 22 0 556 53 26 0 chr1 72903483 72903559 -209290105 - L1PA7 LINE L1 -1 6153 6076 231 208 85 65 chr1 72904136 72904266 -209289398 + MIR3 SINE MIR 36 165 -48 1655 189 0 13 chr1 72904588 72904890 -209288774 + AluJo SINE Alu 1 298 -14 461 246 66 0 chr1 72904910 72905032 -209288632 - MER103 DNA DNA -33 133 4 2503 70 0 0 chr1 72905172 72905472 -209288192 - AluY SINE Alu -11 300 1 189 0 0 0 chr1 72905504 72905525 -209288139 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 215 213 0 0 chr1 72906827 72906874 -209286790 + (TAG)n Simple_repeat Simple_repeat 2 48 0 247 198 0 37 chr1 72906874 72906955 -209286709 + CT-rich Low_complexity Low_complexity 1 78 0 936 252 91 57 chr1 72906981 72907334 -209286330 + MLT1J LTR MaLR 107 471 -40 234 250 18 0 chr1 72907484 72907540 -209286124 - MLT1L LTR MaLR -354 261 205 287 348 60 48 chr1 72909265 72909581 -209284083 - L2 LINE L2 -35 3237 2918 2027 114 0 4 chr1 72910817 72911090 -209282574 - AluSg SINE Alu -12 298 27 1169 224 0 0 chr1 72911087 72911301 -209282363 + MER58A DNA MER1_type 6 219 -5 324 48 0 0 chr1 72911363 72911405 -209282259 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 739 241 40 22 chr1 72911581 72911805 -209281859 - MIR SINE MIR -4 258 31 330 212 0 30 chr1 72912208 72912274 -209281390 + L2 LINE L2 3250 3313 0 232 259 75 88 chr1 72912313 72912460 -209281204 + L2 LINE L2 3161 3305 -8 3869 102 8 0 chr1 72913217 72913729 -209279935 - MER1A DNA MER1_type 0 529 14 507 73 0 0 chr1 72914298 72914366 -209279298 + (T)n Simple_repeat Simple_repeat 1 68 0 203 327 36 18 chr1 72914613 72914723 -209278941 + MER5B DNA MER1_type 1 112 -66 2372 117 42 36 chr1 72915110 72915470 -209278194 + THE1B LTR MaLR 1 362 -2 309 331 158 5 chr1 72915578 72915762 -209277902 + MIR SINE MIR 50 261 -1 419 232 11 11 chr1 72915781 72915876 -209277788 - L2 LINE L2 -20 3293 3199 453 264 123 37 chr1 72916852 72917015 -209276649 - MIR SINE MIR -38 224 48 212 200 140 0 chr1 72917680 72917730 -209275934 - MIR3 SINE MIR -44 164 108 332 234 177 19 chr1 72918577 72918735 -209274929 + MIR SINE MIR 53 235 -27 236 185 0 19 chr1 72918834 72918888 -209274776 + L1P4 LINE L1 5772 5824 -339 564 279 0 20 chr1 72919634 72919781 -209273883 - MIR SINE MIR -70 192 49 519 266 8 0 chr1 72921034 72921158 -209272506 + L2 LINE L2 3189 3313 0 182 91 30 0 chr1 72921198 72921231 -209272433 + (TTAA)n Simple_repeat Simple_repeat 4 37 0 572 300 85 52 chr1 72921483 72922059 -209271605 - L1ME4a LINE L1 -224 5897 5303 216 200 0 0 chr1 72922152 72922197 -209271467 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 1890 172 0 10 chr1 72922311 72922619 -209271045 - AluJo SINE Alu -7 305 1 2072 96 50 0 chr1 72922631 72922913 -209270751 - AluSx SINE Alu -16 296 1 1793 221 9 3 chr1 72923061 72923400 -209270264 - MER58B DNA MER1_type 0 341 1 332 246 139 51 chr1 72923671 72923819 -209269845 - L1ME4a LINE L1 -119 6002 5828 3608 192 41 8 chr1 72923819 72924554 -209269110 + L1MB7 LINE L1 5417 6175 -9 332 246 139 51 chr1 72924554 72924620 -209269044 - L1ME4a LINE L1 -293 5828 5769 4834 93 3 3 chr1 72924950 72925584 -209268080 - L1PA13 LINE L1 0 6163 5530 315 65 0 0 chr1 72925694 72925740 -209267924 + (CA)n Simple_repeat Simple_repeat 1 46 0 332 341 29 7 chr1 72926262 72926400 -209267264 + MIR SINE MIR 122 262 0 372 323 90 18 chr1 72928173 72928340 -209265324 + MLT1K LTR MaLR 4 182 -406 232 240 93 40 chr1 72928329 72928404 -209265260 + MLT1K LTR MaLR 445 523 -65 * 197 340 20 10 chr1 72928548 72928648 -209265016 - L2 LINE L2 -222 3050 2950 609 254 38 27 chr1 72928895 72929080 -209264584 + MIR SINE MIR 50 236 -26 395 219 0 31 chr1 72929081 72929177 -209264487 - MIR SINE MIR 0 262 170 336 208 84 92 chr1 72929440 72929666 -209263998 + MIR SINE MIR 35 261 -1 230 218 36 0 chr1 72929717 72929772 -209263892 - L1ME LINE L1 -213 5908 5852 433 240 94 53 chr1 72931090 72931261 -209262403 + MIR SINE MIR 72 249 -13 295 356 50 0 chr1 72932001 72932102 -209261562 - L2 LINE L2 0 3313 3208 391 216 0 63 chr1 72932213 72932324 -209261340 - MIR SINE MIR 0 262 159 197 376 40 0 chr1 72932348 72932449 -209261215 - L2 LINE L2 -222 3050 2946 295 341 75 23 chr1 72933081 72933295 -209260369 + L3 LINE CR1 1133 1357 -220 2210 106 3 32 chr1 72933593 72933904 -209259760 - AluSx SINE Alu -10 302 1 1332 179 14 0 chr1 72934320 72934532 -209259132 + MER20 DNA MER1_type 5 219 0 358 219 177 112 chr1 72935390 72935618 -209258046 + L1ME4a LINE L1 5630 5891 -230 1961 141 27 0 chr1 72935618 72935916 -209257748 + AluJo SINE Alu 1 306 -6 358 219 177 112 chr1 72935916 72936043 -209257621 + L1ME4a LINE L1 5891 6008 -113 396 214 104 46 chr1 72936185 72936358 -209257306 - L2 LINE L2 -1060 2254 2072 1062 302 23 23 chr1 72936666 72937096 -209256568 + LTR16B LTR ERVL 35 464 0 359 108 59 98 chr1 72939162 72939264 -209254400 - L1P4 LINE L1 -575 5599 5502 1307 78 0 0 chr1 72939282 72939449 -209254215 - L1P4 LINE L1 -637 5531 5365 949 67 0 0 chr1 72939446 72939565 -209254099 + L1PA10 LINE L1 5755 5873 -295 * 1616 148 33 3 chr1 72939565 72939870 -209253794 - L1P4 LINE L1 -755 5391 5078 285 258 214 0 chr1 72941181 72941270 -209252394 + L2 LINE L2 3190 3297 -16 610 239 254 46 chr1 72941272 72941619 -209252045 + L2 LINE L2 2845 3263 -50 424 319 40 106 chr1 72941819 72942356 -209251308 - L2 LINE L2 -85 3187 2688 1714 138 62 48 chr1 72942826 72943182 -209250482 - THE1C LTR MaLR -14 361 1 10406 133 6 45 chr1 72943182 72944824 -209248840 - THE1C-int LTR MaLR 0 1580 3 911 130 7 0 chr1 72944826 72944964 -209248700 - THE1C LTR MaLR 0 375 237 449 158 0 13 chr1 72944970 72945046 -209248618 - THE1C LTR MaLR -353 75 1 366 288 58 14 chr1 72945046 72945185 -209248479 + MIR SINE MIR 76 220 -42 223 205 0 0 chr1 72945652 72945691 -209247973 + L2 LINE L2 3213 3251 -21 278 284 52 26 chr1 72945888 72946004 -209247660 + L3 LINE CR1 1195 1313 -264 207 189 0 0 chr1 72946475 72946528 -209247136 + T-rich Low_complexity Low_complexity 1 53 0 217 155 10 144 chr1 72946675 72946772 -209246892 - L2 LINE L2 -549 2765 2682 570 307 137 0 chr1 72947625 72947830 -209245834 + MIR SINE MIR 10 242 -20 187 273 65 13 chr1 72947930 72948007 -209245657 - L2 LINE L2 -38 3234 3154 273 373 51 0 chr1 72948093 72948211 -209245453 - L2 LINE L2 0 3272 3149 360 302 19 9 chr1 72948649 72948755 -209244909 - MIR SINE MIR -151 111 5 1406 167 0 13 chr1 72950111 72950339 -209243325 + AluJb SINE Alu 64 288 -24 7213 114 55 55 chr1 72950402 72951632 -209242032 + Tigger3b DNA MER2_type 1 1231 0 441 0 0 0 chr1 72951855 72951904 -209241760 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 270 139 0 0 chr1 72951973 72952009 -209241655 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 353 229 153 56 chr1 72952050 72952299 -209241365 - L1ME4a LINE L1 -18 6103 5831 2334 90 0 7 chr1 72952783 72953083 -209240581 - AluSq SINE Alu -15 298 1 699 220 35 12 chr1 72953238 72953411 -209240253 + MIR SINE MIR 24 200 -62 388 351 81 0 chr1 72953617 72953802 -209239862 - MIR SINE MIR -55 207 8 283 233 78 78 chr1 72953804 72953920 -209239744 + L2 LINE L2 3197 3312 -1 272 353 0 0 chr1 72954214 72954299 -209239365 - L2 LINE L2 -3 3269 3185 286 310 47 99 chr1 72954315 72954594 -209239070 + L2 LINE L2 2184 2476 -838 192 40 0 0 chr1 72954594 72954619 -209239045 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 286 310 47 99 chr1 72954619 72954707 -209238957 + L2 LINE L2 2476 2531 -783 2144 196 66 18 chr1 72954707 72955146 -209238518 - LTR40b LTR ERVL -2 460 1 286 310 47 99 chr1 72955146 72955180 -209238484 + L2 LINE L2 2531 2565 -749 308 375 72 15 chr1 72956270 72956534 -209237130 + L2 LINE L2 2563 2841 -473 360 207 74 16 chr1 72956575 72956696 -209236968 + MIR SINE MIR 98 225 -37 256 358 70 59 chr1 72956823 72957010 -209236654 + L2 LINE L2 3032 3220 -52 199 310 144 48 chr1 72958230 72958417 -209235247 - MIR SINE MIR -1 261 57 315 0 0 0 chr1 72958615 72958650 -209235014 + (TG)n Simple_repeat Simple_repeat 2 36 0 238 299 41 10 chr1 72959119 72959216 -209234448 - MIR3 SINE MIR -8 200 101 273 368 14 7 chr1 72959218 72959362 -209234302 - MIR3 SINE MIR -6 202 58 26 30 0 0 chr1 72960971 72961004 -209232660 + AT_rich Low_complexity Low_complexity 1 33 0 1775 171 7 3 chr1 72961893 72962191 -209231473 + AluJb SINE Alu 1 299 -13 509 309 89 32 chr1 72962571 72963043 -209230621 - L1ME3A LINE L1 -222 5948 5450 2180 97 0 0 chr1 72963434 72963756 -209229908 - AluSc SINE Alu 0 322 1 181 267 93 27 chr1 72964665 72964740 -209228924 - MIR SINE MIR -147 115 36 465 247 29 47 chr1 72964781 72964951 -209228713 - L3 LINE CR1 -196 1381 1215 422 267 97 82 chr1 72965680 72965848 -209227816 - MIR SINE MIR -8 254 81 1249 149 63 5 chr1 72965848 72966070 -209227594 + MER46A DNA MER2_type 2 236 0 422 267 97 82 chr1 72966070 72966107 -209227557 - MIR SINE MIR -181 81 46 332 301 7 29 chr1 72966446 72966582 -209227082 + MIR3 SINE MIR 75 207 -1 225 158 105 18 chr1 72967153 72967210 -209226454 + L2 LINE L2 3211 3272 0 1554 176 94 19 chr1 72967243 72967562 -209226102 + MER2 DNA MER2_type 1 343 -1 2230 224 44 14 chr1 72967882 72968134 -209225530 - L1MEc LINE L1 -5126 1270 1027 2269 80 0 30 chr1 72968134 72968435 -209225229 - AluSc SINE Alu -17 292 1 2230 224 44 14 chr1 72968435 72968882 -209224782 - L1MEc LINE L1 -5369 1027 550 1195 270 43 14 chr1 72968886 72969238 -209224426 - L1MEc LINE L1 -5905 491 130 235 348 90 0 chr1 72969477 72969566 -209224098 + L2 LINE L2 3204 3300 -13 183 80 0 0 chr1 72969566 72969591 -209224073 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 239 243 40 0 chr1 72970049 72970123 -209223541 + L1MEc LINE L1 556 632 -5764 350 302 69 40 chr1 72970307 72970509 -209223155 + MIR SINE MIR 29 236 -26 428 350 80 0 chr1 72971493 72971656 -209222008 - MER91A DNA MER1_type -19 177 2 227 150 25 0 chr1 72972285 72972325 -209221339 + MIR SINE MIR 111 151 -111 563 274 104 20 chr1 72972351 72972552 -209221112 - MIR SINE MIR -36 226 9 2171 115 13 0 chr1 72972910 72973034 -209220630 + AluSg SINE Alu 1 122 -188 492 18 0 0 chr1 72973034 72973091 -209220573 + (CA)n Simple_repeat Simple_repeat 2 58 0 2171 115 13 0 chr1 72973091 72973271 -209220393 + AluSg SINE Alu 122 309 -1 243 283 0 0 chr1 72973936 72973989 -209219675 - LTR67 LTR ERVL -99 458 406 2359 103 7 3 chr1 72974585 72974895 -209218769 + AluSx SINE Alu 1 311 -1 315 236 31 63 chr1 72975245 72975372 -209218292 + MIR SINE MIR 113 235 -27 372 225 25 0 chr1 72975496 72975576 -209218088 - MIR SINE MIR -93 115 34 183 344 107 25 chr1 72975725 72975847 -209217817 - L2 LINE L2 -18 3254 3123 * 259 269 54 91 chr1 72975840 72976026 -209217638 + MIR3 SINE MIR 28 206 -2 873 0 0 0 chr1 72976184 72976281 -209217383 + (TATTG)n Simple_repeat Simple_repeat 3 99 0 901 263 22 30 chr1 72976482 72976714 -209216950 - MIR SINE MIR 0 262 33 186 150 0 0 chr1 72977318 72977358 -209216306 + (T)n Simple_repeat Simple_repeat 1 40 0 421 245 99 75 chr1 72977952 72978164 -209215500 + MIR SINE MIR 46 262 0 272 246 31 0 chr1 72978181 72978246 -209215418 + MIR SINE MIR 193 259 -3 288 325 87 32 chr1 72979599 72979725 -209213939 + L2 LINE L2 3140 3272 0 190 73 49 0 chr1 72980603 72980644 -209213020 + (TTG)n Simple_repeat Simple_repeat 1 43 0 552 269 103 18 chr1 72980908 72981131 -209212533 + MIR SINE MIR 21 262 0 649 269 106 43 chr1 72983341 72983600 -209210064 + MIR SINE MIR 1 262 0 301 328 108 43 chr1 72984796 72985028 -209208636 + MIR SINE MIR 2 248 -14 188 381 75 0 chr1 72986905 72987039 -209206625 - L3 LINE CR1 -4 1573 1430 500 358 50 20 chr1 72987201 72987503 -209206161 - L3 LINE CR1 -310 1267 957 795 276 52 9 chr1 72987536 72987768 -209205896 + MIR SINE MIR 21 262 0 364 268 98 24 chr1 72987824 72987947 -209205717 + MIR SINE MIR 23 154 -108 417 39 0 0 chr1 72989122 72989173 -209204491 + (TG)n Simple_repeat Simple_repeat 1 51 0 429 320 88 13 chr1 72989740 72989968 -209203696 + MIR SINE MIR 10 254 -8 430 304 37 63 chr1 72990894 72991164 -209202500 + L2 LINE L2 2616 2878 -436 201 74 0 0 chr1 72991422 72991449 -209202215 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 479 235 31 62 chr1 72992029 72992191 -209201473 - MER103 DNA DNA -1 165 9 821 256 83 0 chr1 72992486 72992716 -209200948 + MIR SINE MIR 12 260 -2 330 67 0 0 chr1 72993236 72993281 -209200383 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 311 287 43 11 chr1 72994154 72994248 -209199416 - L2 LINE L2 -2 3270 3174 445 262 99 29 chr1 72994266 72994438 -209199226 + MER117 DNA MER1_type 13 196 -1 235 335 66 28 chr1 72994514 72994696 -209198968 - L2 LINE L2 -193 3079 2891 1313 316 146 21 chr1 72994815 72995704 -209197960 + L3 LINE CR1 576 1575 -2 671 242 28 51 chr1 72996890 72997068 -209196596 - MIR3 SINE MIR -15 193 20 837 286 36 16 chr1 72997371 72997623 -209196041 + MIR SINE MIR 6 262 0 3595 115 19 10 chr1 72998276 72998798 -209194866 - MER1A DNA MER1_type 0 527 1 276 244 81 12 chr1 72998806 72998892 -209194772 + MIR3 SINE MIR 102 193 -15 487 189 72 144 chr1 72999877 73000099 -209193565 - L1ME2 LINE L1 -10 6154 5949 217 321 12 0 chr1 73000225 73000306 -209193358 + MIR SINE MIR 88 169 -93 463 243 113 34 chr1 73000317 73000494 -209193170 - MIR SINE MIR 0 262 72 1860 151 3 30 chr1 73000809 73001114 -209192550 + AluJo SINE Alu 1 297 -15 24 0 0 0 chr1 73001170 73001194 -209192470 + AT_rich Low_complexity Low_complexity 1 24 0 528 232 97 31 chr1 73001250 73001338 -209192326 - MIR SINE MIR -4 258 177 1469 233 136 36 chr1 73001338 73001831 -209191833 - MLT1F LTR MaLR 0 542 1 528 232 97 31 chr1 73001831 73001969 -209191695 - MIR SINE MIR -85 177 20 424 316 63 123 chr1 73002844 73003259 -209190405 - L2 LINE L2 0 3272 2883 242 128 0 0 chr1 73003338 73003377 -209190287 + 5S rRNA rRNA 1 39 -82 2350 174 31 39 chr1 73003974 73004487 -209189177 + MLT2B2 LTR ERVL 1 509 -6 485 315 70 52 chr1 73004561 73004831 -209188833 - L2 LINE L2 -5 3267 2993 320 232 24 80 chr1 73005006 73005131 -209188533 - MIR SINE MIR -66 142 25 415 291 103 24 chr1 73005134 73005299 -209188365 + MIR3 SINE MIR 22 199 -9 484 183 11 43 chr1 73006236 73006329 -209187335 - Tigger7 DNA MER2_type 0 2587 2498 2716 171 21 23 chr1 73006329 73006851 -209186813 - Tigger7 DNA MER2_type -211 522 2 199 346 59 15 chr1 73008472 73008608 -209185056 - L3 LINE CR1 -30 1547 1406 22 35 0 0 chr1 73008678 73008707 -209184957 + AT_rich Low_complexity Low_complexity 1 29 0 282 257 14 29 chr1 73009335 73009405 -209184259 + MIR SINE MIR 47 115 -147 294 333 0 0 chr1 73009774 73009852 -209183812 - L2 LINE L2 -9 3263 3186 193 214 0 24 chr1 73010068 73010110 -209183554 - L2 LINE L2 -9 3304 3264 467 239 80 9 chr1 73010110 73010223 -209183441 + L2 LINE L2 3188 3308 -5 664 260 74 13 chr1 73010234 73010465 -209183199 - MLT1J1 LTR MaLR -2 444 200 322 304 152 8 chr1 73010661 73010786 -209182878 + L2 LINE L2 3122 3264 -8 298 228 23 28 chr1 73010990 73011208 -209182456 + GA-rich Low_complexity Low_complexity 1 217 0 204 260 20 0 chr1 73011254 73011304 -209182360 - L2 LINE L2 -188 3084 3034 292 222 0 0 chr1 73011940 73012003 -209181661 - MIR SINE MIR -108 154 92 2240 128 0 0 chr1 73012648 73012953 -209180711 + AluSx SINE Alu 1 305 -7 196 320 27 0 chr1 73013000 73013075 -209180589 - MIR3 SINE MIR -15 193 117 794 243 41 9 chr1 73013352 73013570 -209180094 - MIR SINE MIR -1 261 37 206 236 28 28 chr1 73014292 73014364 -209179300 - L2 LINE L2 -71 3242 3171 1551 180 17 27 chr1 73014801 73015101 -209178563 - AluJb SINE Alu -15 297 1 683 271 43 79 chr1 73015236 73015678 -209177986 - MLT1J LTR MaLR -82 429 4 961 216 27 63 chr1 73015827 73016160 -209177504 - L1MC4a LINE L1 -1527 6281 5961 282 226 0 12 chr1 73016165 73016249 -209177415 + (TA)n Simple_repeat Simple_repeat 1 83 0 280 215 15 0 chr1 73016249 73016314 -209177350 - L1MC4a LINE L1 -1849 5959 5894 188 290 110 20 chr1 73016429 73016529 -209177135 - L2 LINE L2 -219 3053 2945 467 228 55 8 chr1 73016750 73016877 -209176787 - MIR3 SINE MIR -63 145 13 1758 186 45 47 chr1 73017017 73017398 -209176266 + MLT1B LTR MaLR 1 380 -10 461 263 83 0 chr1 73019798 73019954 -209173710 + MIR SINE MIR 94 262 0 309 299 88 29 chr1 73019971 73020108 -209173556 + MIR3 SINE MIR 64 208 0 395 204 23 11 chr1 73020537 73020625 -209173039 - MIR SINE MIR -56 206 118 502 195 121 40 chr1 73023645 73023794 -209169870 + MIR SINE MIR 31 191 -71 1950 147 71 37 chr1 73023811 73024137 -209169527 + MER1B DNA MER1_type 1 337 0 1660 191 0 35 chr1 73024481 73024796 -209168868 + AluJo SINE Alu 1 304 -8 551 253 30 30 chr1 73027519 73027685 -209165979 - MIR SINE MIR -63 199 34 229 330 0 40 chr1 73028266 73028366 -209165298 + MER20B DNA MER1_type 84 179 -604 338 252 152 101 chr1 73029267 73029785 -209163879 + L2 LINE L2 2709 3272 0 353 235 265 22 chr1 73030796 73030932 -209162732 - MIR SINE MIR -81 181 13 467 313 112 21 chr1 73032056 73032289 -209161375 + MIR SINE MIR 1 254 -8 353 233 0 0 chr1 73033388 73033461 -209160203 - MIR SINE MIR -11 251 179 207 239 0 0 chr1 73033539 73033585 -209160079 - L2 LINE L2 -4 3309 3264 379 286 170 7 chr1 73033705 73033852 -209159812 - MER5A DNA MER1_type 0 189 19 356 330 9 0 chr1 73034172 73034281 -209159383 + MIR SINE MIR 31 140 -68 22 0 0 0 chr1 73034380 73034402 -209159262 + AT_rich Low_complexity Low_complexity 1 22 0 395 250 30 68 chr1 73034680 73034812 -209158852 - MIR SINE MIR -48 214 88 261 287 21 11 chr1 73035189 73035283 -209158381 - MIR SINE MIR -76 186 92 307 268 52 0 chr1 73035800 73035897 -209157767 + MIR SINE MIR 91 192 -70 997 307 109 25 chr1 73035968 73036447 -209157217 + L2 LINE L2 2458 2976 -338 415 273 164 22 chr1 73036609 73036840 -209156824 + L2 LINE L2 3050 3313 0 28 61 0 0 chr1 73036842 73036891 -209156773 + AT_rich Low_complexity Low_complexity 1 49 0 291 332 57 89 chr1 73037051 73037331 -209156333 - L2 LINE L2 0 3272 3002 216 0 0 0 chr1 73037409 73037433 -209156231 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 26 chr1 73037474 73037492 -209156172 + AT_rich Low_complexity Low_complexity 1 18 -19 16038 25 3 0 chr1 73037492 73040033 -209153631 - L1PA2 LINE L1 -3 6152 3606 27 0 0 26 chr1 73040033 73040052 -209153612 + AT_rich Low_complexity Low_complexity 18 37 0 324 278 93 9 chr1 73040098 73040206 -209153458 - MIR SINE MIR -62 146 30 788 191 96 27 chr1 73041119 73041307 -209152357 + MIR SINE MIR 49 249 -13 531 263 32 92 chr1 73041804 73042021 -209151643 + L2 LINE L2 2980 3183 -89 363 238 262 20 chr1 73042193 73042395 -209151269 - MIR SINE MIR 0 262 12 1817 72 0 0 chr1 73042442 73042663 -209151001 - L1PA7 LINE L1 0 6154 5934 1946 150 0 16 chr1 73043471 73043778 -209149886 + AluSx SINE Alu 1 302 -10 503 255 104 38 chr1 73043817 73043928 -209149736 + MIR SINE MIR 4 106 -156 3226 166 12 36 chr1 73043928 73044490 -209149174 + MER44D DNA MER2_type 1 604 -1 503 255 104 38 chr1 73044490 73044590 -209149074 + MIR SINE MIR 106 229 -33 362 269 104 55 chr1 73045079 73045261 -209148403 - MIR SINE MIR -52 210 20 360 194 56 46 chr1 73045700 73045808 -209147856 + MIR SINE MIR 67 175 -87 314 163 0 0 chr1 73045928 73045977 -209147687 + L2 LINE L2 3263 3311 -2 338 322 126 17 chr1 73046088 73046262 -209147402 - MIR SINE MIR -48 214 22 672 301 12 24 chr1 73046722 73046968 -209146696 + MIR SINE MIR 19 261 -1 214 307 13 13 chr1 73049322 73049397 -209144267 + L2 LINE L2 3194 3268 -45 262 238 50 89 chr1 73049598 73049699 -209143965 + L2 LINE L2 3137 3233 -39 267 266 0 0 chr1 73050474 73050538 -209143126 + L2 LINE L2 2991 3054 -259 2096 145 36 0 chr1 73050557 73050888 -209142776 - MER2 DNA MER2_type -1 343 1 22 35 0 0 chr1 73051153 73051182 -209142482 + AT_rich Low_complexity Low_complexity 1 29 0 1579 188 13 19 chr1 73051192 73051500 -209142164 + AluJb SINE Alu 3 308 -4 676 236 93 0 chr1 73051675 73051836 -209141828 + MER5B DNA MER1_type 1 176 -2 257 323 126 24 chr1 73052085 73052212 -209141452 + MIR SINE MIR 49 188 -74 3085 226 70 54 chr1 73052666 73052924 -209140740 + L1MC4 LINE L1 6801 7053 -989 642 104 0 0 chr1 73052924 73053020 -209140644 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 3085 226 70 54 chr1 73053020 73053713 -209139951 + L1MC4 LINE L1 7053 7768 -274 664 235 54 54 chr1 73053723 73053944 -209139720 + L1MC4 LINE L1 7821 8041 -1 424 202 8 78 chr1 73053981 73054110 -209139554 + MIR SINE MIR 60 179 -83 498 206 387 0 chr1 73054374 73054529 -209139135 - MIR SINE MIR -33 229 15 211 191 29 73 chr1 73054551 73054619 -209139045 + L2 LINE L2 3205 3269 -3 262 304 25 10 chr1 73055040 73055136 -209138528 - MER91B DNA MER1_type -1 189 90 249 393 77 0 chr1 73055151 73055268 -209138396 - MER91A DNA MER1_type -43 153 28 1863 174 0 10 chr1 73055284 73055594 -209138070 + AluJb SINE Alu 1 307 -5 210 118 0 0 chr1 73056397 73056431 -209137233 + (CA)n Simple_repeat Simple_repeat 1 34 0 423 269 58 31 chr1 73057203 73057390 -209136274 + MIR SINE MIR 20 197 -41 518 219 110 43 chr1 73057391 73057555 -209136109 + MER5B DNA MER1_type 1 175 -3 309 223 72 151 chr1 73057691 73057969 -209135695 + MER112 DNA MER1_type 1 256 0 399 156 39 0 chr1 73058936 73059013 -209134651 - L1MA8 LINE L1 -30 6261 6182 281 340 115 13 chr1 73059045 73059201 -209134463 - MIR SINE MIR -71 191 20 593 275 55 46 chr1 73060419 73060637 -209133027 - MIR SINE MIR -19 243 24 397 199 15 52 chr1 73060683 73060819 -209132845 + Charlie7 DNA MER1_type 2441 2571 -41 234 281 109 0 chr1 73060967 73061031 -209132633 + L2 LINE L2 3182 3252 -20 1930 163 14 49 chr1 73061078 73061447 -209132217 + MLT1A1 LTR MaLR 10 365 0 241 326 23 0 chr1 73061948 73062034 -209131630 - MIR SINE MIR -90 172 85 357 318 17 67 chr1 73062488 73062587 -209131077 - MER5A DNA MER1_type -2 187 99 3804 128 80 2 chr1 73062587 73063175 -209130489 - MER41B LTR ERV1 -1 634 1 357 318 17 67 chr1 73063175 73063254 -209130410 - MER5A DNA MER1_type -90 99 18 358 264 213 57 chr1 73063753 73064067 -209129597 - L2 LINE L2 -11 3302 2940 315 149 0 0 chr1 73064233 73064280 -209129384 + MER69 DNA AcHobo 2480 2526 0 885 269 115 29 chr1 73064396 73064779 -209128885 - L2 LINE L2 0 3313 2898 228 254 57 49 chr1 73065056 73065178 -209128486 - L2 LINE L2 -424 2890 2768 653 271 44 20 chr1 73065658 73065763 -209127901 + MIR SINE MIR 47 148 -114 1195 171 254 22 chr1 73065763 73066038 -209127626 - MER44D DNA MER2_type 0 609 1 653 271 44 20 chr1 73066038 73066135 -209127529 + MIR SINE MIR 148 254 -8 894 253 58 12 chr1 73066714 73066971 -209126693 - MLT1J LTR MaLR -242 269 1 2035 133 62 6 chr1 73067037 73067361 -209126303 - MER2 DNA MER2_type -2 342 1 24 0 0 0 chr1 73067989 73068013 -209125651 + AT_rich Low_complexity Low_complexity 1 24 0 403 274 20 0 chr1 73068905 73069007 -209124657 + MIR SINE MIR 159 262 0 2279 119 0 3 chr1 73070207 73070518 -209123146 - AluSg SINE Alu 0 310 1 266 282 0 0 chr1 73070561 73070639 -209123025 - L1MC/D LINE L1 -1981 5827 5750 766 273 118 73 chr1 73071052 73071466 -209122198 - MLT1J LTR MaLR -38 473 36 2833 79 33 8 chr1 73071466 73071832 -209121832 - THE1C LTR MaLR 0 375 1 766 273 118 73 chr1 73071832 73071867 -209121797 - MLT1J LTR MaLR -475 36 4 266 248 87 67 chr1 73073359 73073508 -209120156 + L3 LINE CR1 1176 1327 -250 220 205 0 39 chr1 73073513 73073591 -209120073 + CT-rich Low_complexity Low_complexity 2 76 0 5268 137 9 7 chr1 73073655 73074467 -209119197 + L1MA5 LINE L1 5484 6296 -4 1624 170 7 0 chr1 73074483 73074754 -209118910 + AluJb SINE Alu 30 302 -10 195 349 118 4 chr1 73075025 73075254 -209118410 - L2 LINE L2 -213 3059 2805 1119 254 105 89 chr1 73075699 73075762 -209117902 + MLT1J LTR MaLR 1 62 -449 2300 113 0 3 chr1 73075762 73076072 -209117592 + AluSx SINE Alu 1 309 -3 1119 254 105 89 chr1 73076072 73076511 -209117153 + MLT1J LTR MaLR 62 511 0 311 294 68 55 chr1 73076517 73076663 -209117001 - MIR SINE MIR -50 212 65 182 212 0 0 chr1 73076697 73076730 -209116934 + L2 LINE L2 3235 3267 -5 262 306 8 58 chr1 73076926 73077047 -209116617 - L2 LINE L2 -4 3268 3154 646 211 117 18 chr1 73077539 73077710 -209115954 - MIR SINE MIR -52 210 23 685 231 99 47 chr1 73078336 73078548 -209115116 + MIR SINE MIR 24 246 -16 337 266 0 0 chr1 73079553 73079632 -209114032 + MIR SINE MIR 183 261 -1 766 163 0 31 chr1 73079855 73079984 -209113680 - FLAM_A SINE Alu -8 125 1 242 302 32 0 chr1 73080036 73080099 -209113565 + L2 LINE L2 3185 3249 -23 359 253 11 121 chr1 73080117 73080291 -209113373 + MIR3 SINE MIR 42 196 -12 251 305 46 33 chr1 73080613 73080764 -209112900 + L1ME4a LINE L1 5629 5781 -2027 287 163 170 44 chr1 73080835 73080970 -209112694 + L1ME4a LINE L1 5967 6118 -3 193 280 0 0 chr1 73081551 73081601 -209112063 + MIR SINE MIR 64 113 -149 * 301 323 105 8 chr1 73081589 73081722 -209111942 - L2 LINE L2 0 3272 3127 309 363 18 54 chr1 73081885 73082108 -209111556 + L2 LINE L2 2238 2452 -862 358 340 66 111 chr1 73082361 73082847 -209110817 + L2 LINE L2 2809 3272 0 805 221 102 9 chr1 73083137 73083365 -209110299 - MIR SINE MIR 0 262 17 1032 254 8 20 chr1 73083600 73083844 -209109820 + MIR SINE MIR 1 241 -21 458 287 93 0 chr1 73084675 73084852 -209108812 - MIR SINE MIR -56 206 15 184 163 0 102 chr1 73084873 73084922 -209108742 + L2 LINE L2 3180 3223 -49 698 228 67 94 chr1 73085100 73085355 -209108309 - MER102a DNA MER1_type -6 324 77 340 354 128 12 chr1 73086090 73086254 -209107410 + MER5A DNA MER1_type 3 185 -4 253 179 0 15 chr1 73086514 73086581 -209107083 - MER113 DNA MER1_type? -391 130 65 367 301 141 14 chr1 73086637 73086850 -209106814 + MIR SINE MIR 13 252 -10 824 138 24 0 chr1 73086904 73087027 -209106637 - AluSg/x SINE Alu -10 302 177 1048 171 0 11 chr1 73087091 73087266 -209106398 - FRAM SINE Alu -5 171 1 399 307 71 0 chr1 73087343 73087470 -209106194 + MIR3 SINE MIR 47 182 -26 237 361 63 58 chr1 73088634 73088825 -209104839 - MIR3 SINE MIR -11 197 6 2312 116 17 19 chr1 73089185 73089338 -209104326 - MER46B DNA MER2_type -2495 236 208 2899 92 3 16 chr1 73089338 73089718 -209103946 - THE1C LTR MaLR 0 375 1 2312 116 17 19 chr1 73089718 73089926 -209103738 - MER46B DNA MER2_type -2523 208 1 541 237 151 0 chr1 73089937 73090089 -209103575 + MIR SINE MIR 67 241 -21 329 225 62 125 chr1 73090457 73090617 -209103047 - MIR3 SINE MIR -21 187 38 438 208 146 34 chr1 73090680 73090858 -209102806 - MER110A LTR ERV1 -268 200 3 209 416 15 36 chr1 73090888 73091025 -209102639 + L2 LINE L2 3126 3259 -13 471 288 12 31 chr1 73091060 73091223 -209102441 + L1ME LINE L1 5594 5753 -417 1751 162 47 127 chr1 73091223 73091673 -209101991 - MLT2D LTR ERVL 0 414 1 988 248 119 58 chr1 73091749 73092177 -209101487 - LTR33 LTR ERVL -21 500 47 41 21 0 0 chr1 73092581 73092629 -209101035 + AT_rich Low_complexity Low_complexity 1 48 0 185 289 21 41 chr1 73092655 73092752 -209100912 - MIR3 SINE MIR -42 166 72 225 348 200 0 chr1 73093588 73093743 -209099921 - MIR SINE MIR -8 254 69 40 0 0 0 chr1 73094453 73094493 -209099171 + AT_rich Low_complexity Low_complexity 1 40 0 562 288 68 12 chr1 73094513 73094730 -209098934 - MIR SINE MIR -34 174 3 232 225 101 93 chr1 73094730 73094858 -209098806 + MIR SINE MIR 134 262 0 610 228 184 40 chr1 73095263 73095491 -209098173 + MIR SINE MIR 2 262 0 375 291 15 45 chr1 73095582 73095716 -209097948 - MIR SINE MIR -31 231 102 334 312 21 64 chr1 73096191 73096332 -209097332 + MIR SINE MIR 7 141 -121 902 111 124 0 chr1 73097899 73098052 -209095612 + MER46B DNA MER2_type 3 49 -187 819 153 0 30 chr1 73098055 73098186 -209095478 + FLAM_C SINE Alu 1 127 -16 1108 149 20 20 chr1 73098195 73098396 -209095268 + MER46B DNA MER2_type 36 236 0 230 337 11 80 chr1 73098471 73098658 -209095006 - L2 LINE L2 -52 3220 3047 1689 164 32 29 chr1 73099071 73099381 -209094283 + AluJb SINE Alu 1 311 -1 253 145 145 0 chr1 73099748 73099810 -209093854 + MIR SINE MIR 178 248 -14 432 336 28 14 chr1 73100773 73100916 -209092748 - L3 LINE CR1 -7 1570 1426 4160 134 24 29 chr1 73100926 73101628 -209092036 - L1MB3 LINE L1 -7 6176 5478 542 282 48 24 chr1 73101670 73101876 -209091788 + MIR SINE MIR 42 252 -10 660 293 16 81 chr1 73101905 73102226 -209091438 - L3 LINE CR1 -160 1417 1118 1366 196 49 0 chr1 73103422 73103545 -209090119 - AluJo SINE Alu -55 257 141 253 45 23 23 chr1 73103545 73103589 -209090075 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1366 196 49 0 chr1 73103589 73103710 -209089954 - AluJo SINE Alu -171 141 1 2204 88 3 11 chr1 73104654 73104966 -209088698 - AluSg SINE Alu 0 310 1 212 154 0 26 chr1 73105308 73105347 -209088317 + CT-rich Low_complexity Low_complexity 2 39 0 1471 268 56 33 chr1 73106072 73106680 -209086984 - L1MC4a LINE L1 -1902 5906 5285 934 78 86 0 chr1 73106776 73106904 -209086760 + MER85 DNA T2_type 1 139 0 366 263 117 15 chr1 73108031 73108168 -209085496 + MIR SINE MIR 12 162 -100 315 163 9 0 chr1 73108176 73108241 -209085423 - MLT1F LTR MaLR -18 524 472 508 169 254 0 chr1 73108329 73108459 -209085205 - MLT1H LTR MaLR -386 163 1 192 346 7 66 chr1 73108515 73108651 -209085013 - L2 LINE L2 -4 3309 3182 502 287 122 0 chr1 73110346 73110510 -209083154 - MIR SINE MIR -24 238 55 2358 122 23 14 chr1 73111232 73111584 -209082080 + THE1A LTR MaLR 1 355 0 608 239 19 58 chr1 73111957 73112162 -209081502 + L2 LINE L2 3117 3313 0 2265 187 46 13 chr1 73113469 73114055 -209079609 + L1MD2 LINE L1 5655 7951 -44 226 291 12 81 chr1 73114496 73114582 -209079082 + L2 LINE L2 3100 3179 -93 2343 79 27 0 chr1 73114592 73114884 -209078780 - AluSc SINE Alu -9 300 1 366 254 91 42 chr1 73115412 73115577 -209078087 + MIR SINE MIR 5 177 -85 186 189 0 0 chr1 73115638 73115675 -209077989 + T-rich Low_complexity Low_complexity 5 41 0 293 310 5 0 chr1 73116590 73116698 -209076966 + MIR3 SINE MIR 57 167 -41 309 279 0 0 chr1 73117764 73117843 -209075821 - MIR SINE MIR -118 144 66 193 276 0 52 chr1 73119543 73119601 -209074063 + MIR SINE MIR 21 75 -133 372 357 6 12 chr1 73119602 73119770 -209073894 + MER117 DNA MER1_type 12 178 -19 183 167 0 0 chr1 73119793 73119823 -209073841 + MIR3 SINE MIR 164 193 -15 288 0 0 0 chr1 73119838 73119870 -209073794 + (TG)n Simple_repeat Simple_repeat 2 33 0 4873 119 29 8 chr1 73120424 73121088 -209072576 - L1PA16 LINE L1 0 6166 5483 2288 95 0 10 chr1 73121088 73121392 -209072272 - AluSg SINE Alu -8 302 2 4873 119 29 8 chr1 73121392 73121484 -209072180 - L1PA16 LINE L1 -683 5483 5394 259 297 27 0 chr1 73122962 73123036 -209070628 - L2 LINE L2 -4 3268 3193 2547 108 47 8 chr1 73123094 73123455 -209070209 + THE1C LTR MaLR 1 375 0 191 306 42 14 chr1 73123690 73123762 -209069902 + L2 LINE L2 3191 3264 -8 299 149 0 0 chr1 73123796 73123843 -209069821 - L2 LINE L2 -16 3256 3210 222 359 55 8 chr1 73124256 73124384 -209069280 - L2 LINE L2 -2 3270 3137 262 282 68 65 chr1 73125065 73125402 -209068262 + L1MEd LINE L1 686 1023 -5096 686 274 28 22 chr1 73125403 73125582 -209068082 + MIR SINE MIR 6 185 -77 262 346 39 6 chr1 73125820 73125992 -209067672 + L2 LINE L2 2797 2961 -311 236 229 0 0 chr1 73127201 73127262 -209066402 + LTR66 LTR ERVL 401 461 -149 2252 148 33 19 chr1 73127397 73127756 -209065908 - THE1B LTR MaLR 0 364 1 251 318 106 0 chr1 73128319 73128451 -209065213 + MIR SINE MIR 101 246 -16 245 299 124 10 chr1 73128540 73128637 -209065027 + MIR SINE MIR 41 148 -60 1210 181 82 54 chr1 73128683 73128998 -209064666 + MER33 DNA MER1_type 1 324 0 31 26 0 0 chr1 73129182 73129220 -209064444 + AT_rich Low_complexity Low_complexity 1 38 0 1717 165 42 0 chr1 73129381 73129666 -209063998 - AluJb SINE Alu -15 297 1 221 297 164 30 chr1 73130737 73131000 -209062664 + L2 LINE L2 2851 3148 -124 225 400 0 0 chr1 73131158 73131228 -209062436 + L2 LINE L2 3155 3224 -48 190 267 67 93 chr1 73131302 73131377 -209062287 - MER5A DNA MER1_type -5 184 112 274 163 0 0 chr1 73131392 73131435 -209062229 + MER5A DNA MER1_type 147 189 0 893 202 6 33 chr1 73131441 73131624 -209062040 - MER5B DNA MER1_type 0 178 1 274 325 122 5 chr1 73131749 73131937 -209061727 + MIR SINE MIR 14 223 -39 450 268 94 0 chr1 73132090 73132228 -209061436 - MIR SINE MIR -2 260 110 1030 248 81 65 chr1 73132239 73132686 -209060978 + MLT1C LTR MaLR 10 463 -4 211 172 138 17 chr1 73132686 73132744 -209060920 - MIR SINE MIR -149 113 49 483 279 79 7 chr1 73132809 73132949 -209060715 - L2 LINE L2 -1 3271 3122 433 223 143 0 chr1 73133801 73133913 -209059751 - L2 LINE L2 0 3313 3186 552 250 138 12 chr1 73133965 73134125 -209059539 - MIR SINE MIR -72 190 11 2816 189 18 6 chr1 73134352 73134865 -209058799 + L1MB5 LINE L1 5643 6161 -13 211 322 46 11 chr1 73135033 73135120 -209058544 + MIR SINE MIR 58 147 -61 21 36 0 0 chr1 73135390 73135418 -209058246 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1 73135992 73136016 -209057648 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 311 255 70 105 chr1 73136113 73136276 -209057388 - L1ME4a LINE L1 -147 5974 5807 2136 127 40 45 chr1 73136276 73136653 -209057011 + THE1C LTR MaLR 1 375 0 2370 107 0 0 chr1 73136659 73136969 -209056695 + AluSx SINE Alu 1 310 -2 311 255 70 105 chr1 73136969 73137084 -209056580 - L1ME4a LINE L1 -319 5802 5699 492 278 56 42 chr1 73137124 73137427 -209056237 - L1M2 LINE L1 -570 5551 5269 296 286 71 109 chr1 73137686 73137795 -209055869 - L3 LINE CR1 -2 1575 1463 3597 123 16 107 chr1 73137795 73138479 -209055185 + L1PB2 LINE L1 5525 6146 -5 296 286 71 109 chr1 73138479 73138607 -209055057 - L3 LINE CR1 -114 1463 1347 414 270 61 17 chr1 73138669 73138784 -209054880 + MIR SINE MIR 28 147 -115 2133 153 47 19 chr1 73139009 73139374 -209054290 - THE1C LTR MaLR 0 375 1 182 197 115 33 chr1 73139585 73139646 -209054018 + MIR SINE MIR 157 222 -40 2208 120 7 0 chr1 73140147 73140446 -209053218 - AluSc SINE Alu -8 301 1 410 252 350 14 chr1 73140668 73140882 -209052782 - L2 LINE L2 0 3272 2987 1551 121 13 0 chr1 73141114 73141353 -209052311 - L1MA2 LINE L1 -4 6300 6059 809 114 0 0 chr1 73141354 73141459 -209052205 - U6 snRNA snRNA 0 107 3 28 0 0 0 chr1 73141554 73141582 -209052082 + AT_rich Low_complexity Low_complexity 1 28 0 304 268 60 59 chr1 73141671 73141815 -209051849 - MIR SINE MIR -28 180 27 221 333 117 17 chr1 73141853 73141911 -209051753 + L2 LINE L2 2825 2876 -396 1548 189 36 80 chr1 73141911 73142297 -209051367 - MLT1A2 LTR MaLR -1 373 5 221 333 117 17 chr1 73142297 73142469 -209051195 + L2 LINE L2 2876 3078 -194 387 349 109 5 chr1 73142646 73142838 -209050826 + L3 LINE CR1 1178 1389 -188 292 329 71 0 chr1 73143027 73143167 -209050497 + L3 LINE CR1 1424 1573 -4 222 171 0 0 chr1 73143325 73143366 -209050298 + (TG)n Simple_repeat Simple_repeat 1 41 0 1467 172 92 0 chr1 73143366 73143628 -209050036 - AluJo SINE Alu -26 286 1 198 71 0 0 chr1 73144306 73144334 -209049330 + (TG)n Simple_repeat Simple_repeat 1 28 0 2463 73 3 0 chr1 73144521 73144824 -209048840 + AluY SINE Alu 1 304 -7 219 305 61 0 chr1 73144986 73145068 -209048596 - MIR SINE MIR -88 120 34 1742 136 18 7 chr1 73145327 73145606 -209048058 + L1MB3 LINE L1 5895 6176 -7 342 209 267 0 chr1 73145814 73145900 -209047764 - MIR SINE MIR -61 147 39 288 266 0 13 chr1 73146113 73146192 -209047472 - MIR SINE MIR 0 262 185 519 263 190 6 chr1 73146221 73146400 -209047264 - MIR SINE MIR -4 258 47 21 0 0 0 chr1 73146643 73146664 -209047000 + AT_rich Low_complexity Low_complexity 1 21 0 203 254 0 30 chr1 73146987 73147054 -209046610 + CT-rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr1 73147246 73147268 -209046396 + AT_rich Low_complexity Low_complexity 1 22 0 495 238 93 70 chr1 73148514 73148686 -209044978 - MIR3 SINE MIR -14 194 19 258 32 0 0 chr1 73148703 73148734 -209044930 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 191 339 139 30 chr1 73148953 73149118 -209044546 + L2 LINE L2 3078 3260 -12 669 195 127 157 chr1 73149164 73149717 -209043947 - MLT1H1 LTR MaLR 0 555 20 325 335 30 0 chr1 73150081 73150211 -209043453 + MER20B DNA MER1_type 63 199 -20 203 268 0 155 chr1 73151014 73151156 -209042508 + L2 LINE L2 3022 3141 -131 2011 139 49 17 chr1 73152968 73153312 -209040352 - MLT1A1 LTR MaLR -7 358 4 312 262 143 19 chr1 73153520 73153730 -209039934 + MIR SINE MIR 4 231 -31 337 307 69 46 chr1 73154366 73154600 -209039064 + MIR SINE MIR 15 258 -4 609 220 0 25 chr1 73154626 73154744 -209038920 + MER5B DNA MER1_type 16 130 -48 731 212 103 0 chr1 73154770 73154935 -209038729 - MIR SINE MIR -61 201 20 277 231 22 55 chr1 73155514 73155605 -209038059 + MIR SINE MIR 61 148 -114 988 247 21 4 chr1 73156180 73156415 -209037249 + MIR SINE MIR 23 261 -1 278 283 18 53 chr1 73156691 73156826 -209036838 + MIR SINE MIR 7 134 -74 4706 181 99 30 chr1 73156826 73158005 -209035659 + Charlie1 DNA MER1_type 1440 2756 -5 506 206 29 59 chr1 73158016 73158152 -209035512 + MIR SINE MIR 23 154 -108 228 284 15 0 chr1 73158187 73158254 -209035410 + (TTA)n Simple_repeat Simple_repeat 1 68 0 288 244 47 23 chr1 73158619 73158705 -209034959 - MIR SINE MIR -72 136 49 342 279 142 9 chr1 73159227 73159448 -209034216 + MIR3 SINE MIR 4 259 -3 187 288 55 14 chr1 73159547 73159620 -209034044 + MIR SINE MIR 81 156 -106 860 219 7 68 chr1 73159739 73160017 -209033647 - MIR SINE MIR 0 262 2 1013 158 147 11 chr1 73160657 73160841 -209032823 - MER3 DNA MER1_type 0 209 1 263 306 21 12 chr1 73160841 73160928 -209032736 - L2 LINE L2 -42 3248 3152 28 0 0 0 chr1 73161076 73161104 -209032560 + AT_rich Low_complexity Low_complexity 1 28 0 957 195 27 94 chr1 73161192 73161505 -209032159 + L1ME2 LINE L1 5860 6146 -18 286 238 72 25 chr1 73161745 73161870 -209031794 + HAL1b LINE L1 1214 1341 -7 373 314 92 0 chr1 73162557 73162710 -209030954 - MIR SINE MIR -87 175 9 2391 49 3 0 chr1 73163630 73163915 -209029749 + AluY SINE Alu 1 286 -25 396 0 0 0 chr1 73163918 73163962 -209029702 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1637 199 69 29 chr1 73165970 73166390 -209027274 - Zaphod DNA AcHobo -5 4026 3585 1649 189 0 7 chr1 73166390 73166714 -209026950 - AluJb SINE Alu 0 312 1 1637 199 69 29 chr1 73166714 73166745 -209026919 - Zaphod DNA AcHobo -446 3585 3557 879 177 12 12 chr1 73166747 73166911 -209026753 - AluSg/x SINE Alu -20 292 129 982 197 0 0 chr1 73166923 73167131 -209026533 - Zaphod DNA AcHobo -489 3542 3335 * 1613 274 58 17 chr1 73167120 73167187 -209026477 - Zaphod DNA AcHobo -3377 654 591 1841 213 78 7 chr1 73167187 73167623 -209026041 - MLT1C LTR MaLR 0 467 1 1613 274 58 17 chr1 73167623 73168091 -209025573 - Zaphod DNA AcHobo -3440 591 97 4160 161 58 21 chr1 73168155 73168815 -209024849 - L1MB7 LINE L1 0 6682 6048 207 0 0 0 chr1 73168815 73168838 -209024826 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4160 161 58 21 chr1 73168838 73168853 -209024811 - L1MB7 LINE L1 -634 6048 6035 2244 113 0 3 chr1 73168853 73169155 -209024509 + AluSx SINE Alu 1 301 -11 4160 161 58 21 chr1 73169155 73169861 -209023803 - L1MB7 LINE L1 -647 6035 5210 229 224 47 47 chr1 73169861 73169946 -209023718 - MLT2C1 LTR ERVL 0 520 436 * 1014 181 73 52 chr1 73169944 73170232 -209023432 - MLT2C1 LTR ERVL -102 295 2 5225 213 42 21 chr1 73170238 73171721 -209021943 - L1MB7 LINE L1 -1438 5206 3693 963 180 82 67 chr1 73171716 73171889 -209021775 - L1MB7 LINE L1 -5480 1062 882 * 2267 117 0 0 chr1 73171889 73172187 -209021477 + AluSg SINE Alu 1 298 -12 963 180 82 67 chr1 73172187 73172280 -209021384 - L1MB7 LINE L1 -5660 882 792 335 154 0 0 chr1 73172278 73172330 -209021334 + L1M4 LINE L1 833 884 -5658 * 201 133 0 0 chr1 73172560 73172590 -209021074 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 321 270 0 79 chr1 73172612 73172738 -209020926 + MIR SINE MIR 132 247 -15 349 273 50 41 chr1 73173504 73173625 -209020039 + L2 LINE L2 3148 3269 -3 450 224 199 6 chr1 73173950 73174106 -209019558 - MER5A DNA MER1_type 0 189 4 333 346 15 15 chr1 73174155 73174288 -209019376 + MIR3 SINE MIR 67 199 -9 261 57 0 0 chr1 73174754 73174789 -209018875 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2321 75 0 0 chr1 73174791 73175071 -209018593 - AluY SINE Alu -31 280 1 1452 235 25 74 chr1 73175355 73175925 -209017739 - MER34 LTR ERV1 0 542 1 30 0 0 0 chr1 73176021 73176051 -209017613 + AT_rich Low_complexity Low_complexity 1 30 0 213 108 0 0 chr1 73176068 73176105 -209017559 + (TC)n Simple_repeat Simple_repeat 1 37 0 624 236 12 30 chr1 73176185 73176350 -209017314 + MER5B DNA MER1_type 1 162 -16 1054 261 75 45 chr1 73176503 73177008 -209016656 - LTR33A LTR ERVL -1 522 3 194 240 40 0 chr1 73177605 73177655 -209016009 - MIR SINE MIR -10 252 201 237 337 54 0 chr1 73177686 73177778 -209015886 - MIR SINE MIR -162 100 4 320 206 100 44 chr1 73177841 73178001 -209015663 - MER77 LTR ERV1 -21 584 416 590 76 46 152 chr1 73178725 73178779 -209014885 - MER3 DNA MER1_type 0 2585 2527 2368 75 10 0 chr1 73178779 73179074 -209014590 - AluY SINE Alu -13 298 1 590 76 46 152 chr1 73179074 73179101 -209014563 - MER3 DNA MER1_type -58 2527 2499 695 119 0 0 chr1 73179101 73179202 -209014462 - HY3 scRNA scRNA 0 101 1 590 76 46 152 chr1 73179202 73179316 -209014348 - MER3 DNA MER1_type -86 2499 2410 459 204 0 0 chr1 73179316 73179419 -209014245 - L1MA9 LINE L1 -5 6307 6205 340 283 85 13 chr1 73180808 73180967 -209012697 - MIR SINE MIR -65 143 7 454 317 0 0 chr1 73180984 73181107 -209012557 - L2 LINE L2 0 3313 3191 202 279 77 58 chr1 73181218 73181322 -209012342 + L2 LINE L2 3109 3214 -58 357 225 112 80 chr1 73181394 73181581 -209012083 - MIR SINE MIR -14 248 56 513 135 48 63 chr1 73181692 73181818 -209011846 - MER3 DNA MER1_type 0 2461 2338 1973 145 10 0 chr1 73181818 73182122 -209011542 + AluJb SINE Alu 1 307 -5 459 16 0 0 chr1 73182158 73182219 -209011445 + AluY SINE Alu 244 304 -6 5772 169 31 8 chr1 73182222 73182458 -209011206 - MER3 DNA MER1_type -279 2345 2116 2228 67 0 0 chr1 73182458 73182728 -209010936 - AluY SINE Alu -7 304 35 5772 169 31 8 chr1 73182728 73183718 -209009946 - MER3 DNA MER1_type -508 2116 1091 1033 158 184 46 chr1 73183743 73184091 -209009573 - MER3 DNA MER1_type 0 968 573 219 167 0 0 chr1 73184267 73184309 -209009355 + (TG)n Simple_repeat Simple_repeat 1 42 0 1172 181 12 47 chr1 73184579 73184833 -209008831 - L1MB5 LINE L1 -8 6166 5922 685 93 5 19 chr1 73184867 73184985 -209008679 - L1MB5 LINE L1 -240 5928 5814 1759 158 45 14 chr1 73185079 73185370 -209008294 - AluJb SINE Alu -12 300 1 218 308 108 0 chr1 73185370 73185435 -209008229 + MIR SINE MIR 114 185 -77 848 298 80 36 chr1 73185436 73186188 -209007476 - L2 LINE L2 0 3313 2526 1850 139 49 17 chr1 73237944 73238288 -208955376 - MLT1A1 LTR MaLR -7 358 4 322 253 148 24 chr1 73238496 73238706 -208954958 + MIR SINE MIR 4 231 -31 346 316 65 43 chr1 73239342 73239576 -208954088 + MIR SINE MIR 15 258 -4 614 235 8 23 chr1 73239588 73239720 -208953944 + MER5B DNA MER1_type 1 130 -48 734 212 103 0 chr1 73239746 73239911 -208953753 - MIR SINE MIR -61 201 20 275 231 22 55 chr1 73240489 73240580 -208953084 + MIR SINE MIR 61 148 -114 993 247 21 4 chr1 73241155 73241390 -208952274 + MIR SINE MIR 23 261 -1 274 272 19 48 chr1 73241698 73241801 -208951863 + MIR SINE MIR 34 133 -129 4182 181 99 30 chr1 73241801 73242980 -208950684 + Charlie1 DNA MER1_type 1440 2756 -5 522 206 29 59 chr1 73242991 73243127 -208950537 + MIR SINE MIR 23 154 -108 228 284 15 0 chr1 73243162 73243229 -208950435 + (TTA)n Simple_repeat Simple_repeat 1 68 0 288 244 47 23 chr1 73243594 73243680 -208949984 - MIR SINE MIR -72 136 49 345 279 142 9 chr1 73244202 73244423 -208949241 + MIR3 SINE MIR 4 259 -3 186 288 55 14 chr1 73244522 73244595 -208949069 + MIR SINE MIR 81 156 -106 871 219 7 68 chr1 73244714 73244992 -208948672 - MIR SINE MIR 0 262 2 234 283 106 18 chr1 73245607 73245632 -208948032 - L2 LINE L2 -8 3305 3284 924 158 147 11 chr1 73245632 73245816 -208947848 - MER3 DNA MER1_type 0 209 1 234 283 106 18 chr1 73245816 73245903 -208947761 - L2 LINE L2 -29 3284 3183 28 0 0 0 chr1 73246051 73246079 -208947585 + AT_rich Low_complexity Low_complexity 1 28 0 843 192 24 96 chr1 73246189 73246480 -208947184 + L1ME2 LINE L1 5877 6146 -18 265 238 74 25 chr1 73246724 73246846 -208946818 + HAL1b LINE L1 1214 1341 -7 373 314 92 0 chr1 73247533 73247686 -208945978 - MIR SINE MIR -87 175 9 2391 49 3 0 chr1 73248606 73248891 -208944773 + AluY SINE Alu 1 286 -25 396 0 0 0 chr1 73248894 73248938 -208944726 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1637 199 69 29 chr1 73250948 73251368 -208942296 - Zaphod DNA AcHobo -5 4026 3585 1649 189 0 7 chr1 73251368 73251692 -208941972 - AluJb SINE Alu 0 312 1 1637 199 69 29 chr1 73251692 73251723 -208941941 - Zaphod DNA AcHobo -446 3585 3557 879 177 12 12 chr1 73251725 73251889 -208941775 - AluSg/x SINE Alu -20 292 129 982 197 0 0 chr1 73251901 73252109 -208941555 - Zaphod DNA AcHobo -489 3542 3335 * 1638 272 58 17 chr1 73252098 73252165 -208941499 - Zaphod DNA AcHobo -3377 654 591 1841 213 78 7 chr1 73252165 73252601 -208941063 - MLT1C LTR MaLR 0 467 1 1638 272 58 17 chr1 73252601 73253069 -208940595 - Zaphod DNA AcHobo -3440 591 97 4160 161 58 21 chr1 73253133 73253793 -208939871 - L1MB7 LINE L1 0 6682 6048 243 0 0 0 chr1 73253793 73253820 -208939844 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 4160 161 58 21 chr1 73253820 73253835 -208939829 - L1MB7 LINE L1 -634 6048 6035 2275 109 0 3 chr1 73253835 73254138 -208939526 + AluSx SINE Alu 1 302 -10 4160 161 58 21 chr1 73254138 73254845 -208938819 - L1MB7 LINE L1 -647 6035 5210 1014 181 73 52 chr1 73254929 73255217 -208938447 - MLT2C1 LTR ERVL -102 295 2 5213 213 42 22 chr1 73255223 73256708 -208936956 - L1MB7 LINE L1 -1438 5206 3693 963 180 82 67 chr1 73256703 73256876 -208936788 - L1MB7 LINE L1 -5480 1062 882 * 2276 117 0 0 chr1 73256876 73257175 -208936489 + AluSg SINE Alu 1 299 -11 963 180 82 67 chr1 73257175 73257268 -208936396 - L1MB7 LINE L1 -5660 882 792 335 154 0 0 chr1 73257266 73257318 -208936346 + L1M4 LINE L1 833 884 -5658 * 201 133 0 0 chr1 73257547 73257577 -208936087 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 321 270 0 79 chr1 73257599 73257725 -208935939 + MIR SINE MIR 132 247 -15 349 273 50 41 chr1 73258491 73258612 -208935052 + L2 LINE L2 3148 3269 -3 450 224 199 6 chr1 73258937 73259093 -208934571 - MER5A DNA MER1_type 0 189 4 333 346 15 15 chr1 73259142 73259275 -208934389 + MIR3 SINE MIR 67 199 -9 261 57 0 0 chr1 73259741 73259776 -208933888 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2321 75 0 0 chr1 73259778 73260058 -208933606 - AluY SINE Alu -31 280 1 1452 235 25 74 chr1 73260342 73260912 -208932752 - MER34 LTR ERV1 0 542 1 30 0 0 0 chr1 73261008 73261038 -208932626 + AT_rich Low_complexity Low_complexity 1 30 0 213 108 0 0 chr1 73261055 73261092 -208932572 + (TC)n Simple_repeat Simple_repeat 1 37 0 624 236 12 30 chr1 73261172 73261337 -208932327 + MER5B DNA MER1_type 1 162 -16 1242 259 75 45 chr1 73261490 73261995 -208931669 - LTR33A LTR ERVL -1 522 3 193 152 30 0 chr1 73262590 73262623 -208931041 - L2 LINE L2 -14 3258 3225 191 240 40 0 chr1 73262592 73262642 -208931022 - MIR SINE MIR -10 252 201 * 229 348 54 0 chr1 73262673 73262765 -208930899 - MIR SINE MIR -162 100 4 387 206 100 44 chr1 73262828 73262988 -208930676 - MER77 LTR ERV1 -21 584 416 288 196 0 0 chr1 73263712 73263763 -208929901 - Charlie5 DNA MER1_type 0 2624 2574 2373 75 10 0 chr1 73263766 73264060 -208929604 - AluY SINE Alu -13 298 2 644 109 20 20 chr1 73264089 73264190 -208929474 - HY3 scRNA scRNA 0 101 1 222 343 41 0 chr1 73264311 73264384 -208929280 - MIR SINE MIR -103 105 30 2153 70 0 0 chr1 73264446 73264705 -208928959 - AluY SINE Alu -18 293 35 5215 167 34 8 chr1 73264705 73265695 -208927969 - Charlie5 DNA MER1_type -506 2106 1091 1214 147 190 52 chr1 73265720 73266068 -208927596 - Charlie5 DNA MER1_type -1644 968 573 219 167 0 0 chr1 73266244 73266286 -208927378 + (TG)n Simple_repeat Simple_repeat 1 42 0 1286 181 12 47 chr1 73266556 73266810 -208926854 - L1MB5 LINE L1 -8 6166 5922 742 91 5 19 chr1 73266844 73266964 -208926700 - L1MB5 LINE L1 -250 5934 5812 1741 158 45 14 chr1 73267056 73267347 -208926317 - AluJb SINE Alu -12 300 1 215 308 108 0 chr1 73267347 73267412 -208926252 + MIR SINE MIR 114 185 -77 835 298 80 36 chr1 73267413 73268165 -208925499 - L2 LINE L2 0 3313 2526 315 65 0 0 chr1 73268299 73268345 -208925319 + (CA)n Simple_repeat Simple_repeat 1 46 0 332 341 29 7 chr1 73268867 73269005 -208924659 + MIR SINE MIR 122 262 0 365 323 90 18 chr1 73270809 73270976 -208922688 + MLT1K LTR MaLR 4 182 -406 232 240 93 40 chr1 73270965 73271040 -208922624 + MLT1K LTR MaLR 445 523 -65 * 199 340 20 10 chr1 73271184 73271284 -208922380 - L2 LINE L2 -222 3050 2950 336 208 84 92 chr1 73271745 73271971 -208921693 + MIR SINE MIR 35 261 -1 230 218 36 0 chr1 73272022 73272077 -208921587 - L1ME LINE L1 -213 5908 5852 433 240 94 53 chr1 73273395 73273566 -208920098 + MIR SINE MIR 72 249 -13 295 356 50 0 chr1 73274306 73274407 -208919257 - L2 LINE L2 0 3313 3208 391 216 0 63 chr1 73274518 73274629 -208919035 - MIR SINE MIR 0 262 159 197 376 40 0 chr1 73274653 73274754 -208918910 - L2 LINE L2 -222 3050 2946 278 341 75 23 chr1 73275386 73275600 -208918064 + L3 LINE CR1 1133 1357 -220 2198 103 6 32 chr1 73275898 73276209 -208917455 - AluSq SINE Alu -10 303 1 1393 171 14 0 chr1 73276620 73276836 -208916828 + MER20 DNA MER1_type 1 219 0 358 219 177 112 chr1 73277694 73277922 -208915742 + L1ME4a LINE L1 5630 5891 -230 1892 142 28 0 chr1 73277922 73278211 -208915453 + AluJo SINE Alu 1 297 -15 358 219 177 112 chr1 73278211 73278338 -208915326 + L1ME4a LINE L1 5891 6008 -113 396 214 104 46 chr1 73278480 73278653 -208915011 - L2 LINE L2 -1060 2254 2072 1062 302 23 23 chr1 73278961 73279391 -208914273 + LTR16B LTR ERVL 35 464 0 337 283 85 13 chr1 73282622 73282781 -208910883 - MIR SINE MIR -65 143 7 435 325 0 0 chr1 73282798 73282921 -208910743 - L2 LINE L2 0 3313 3191 211 265 12 72 chr1 73283053 73283136 -208910528 + L2 LINE L2 3137 3214 -58 367 236 11 11 chr1 73283306 73283395 -208910269 - MIR SINE MIR -118 144 56 268 286 24 12 chr1 73285036 73285120 -208908544 + MLT1K LTR MaLR 504 588 0 43 71 0 0 chr1 73285406 73285491 -208908173 + AT_rich Low_complexity Low_complexity 1 85 0 1878 157 0 3 chr1 73285643 73285937 -208907727 - AluJb SINE Alu -19 293 1 2173 118 37 86 chr1 73286202 73286585 -208907079 + THE1B LTR MaLR 1 364 0 345 294 107 28 chr1 73287362 73287539 -208906125 - MIR SINE MIR -56 206 16 21 0 0 0 chr1 73287602 73287623 -208906041 + AT_rich Low_complexity Low_complexity 1 21 0 235 318 0 0 chr1 73288129 73288195 -208905469 + CT-rich Low_complexity Low_complexity 5 70 0 459 148 0 0 chr1 73288520 73288608 -208905056 + (TCCC)n Simple_repeat Simple_repeat 1 88 0 377 268 42 65 chr1 73288744 73288912 -208904752 + MIR3 SINE MIR 22 185 -23 190 128 0 77 chr1 73289114 73289153 -208904511 + MIR3 SINE MIR 153 188 -20 257 276 16 29 chr1 73290074 73290190 -208903474 - MIR SINE MIR -40 168 59 480 284 178 10 chr1 73290282 73290479 -208903185 - MIR SINE MIR -28 234 5 2012 149 0 0 chr1 73290986 73291317 -208902347 - AluSx SINE Alu 0 331 1 2243 187 17 7 chr1 73291506 73291923 -208901741 + L1MB5 LINE L1 5722 6142 -32 1771 167 0 20 chr1 73291923 73292216 -208901448 + AluJo SINE Alu 1 287 -25 289 146 0 0 chr1 73292244 73292292 -208901372 + L1MB5 LINE L1 6127 6174 0 331 283 73 57 chr1 73294869 73295046 -208898618 + L2 LINE L2 2690 2869 -445 401 306 78 39 chr1 73295065 73295245 -208898419 + L2 LINE L2 3127 3313 0 1939 147 0 51 chr1 73295369 73295683 -208897981 - AluJo SINE Alu -14 298 1 665 125 26 0 chr1 73296302 73296454 -208897210 + GA-rich Low_complexity Low_complexity 1 156 0 285 211 92 0 chr1 73296487 73296563 -208897101 - MIR SINE MIR -89 173 91 587 305 46 41 chr1 73297133 73297330 -208896334 + MIR3 SINE MIR 2 199 -9 386 349 79 39 chr1 73297330 73297802 -208895862 + L2 LINE L2 2577 3061 -211 272 319 11 11 chr1 73299394 73299488 -208894176 + GA-rich Low_complexity Low_complexity 2 95 0 23 0 0 0 chr1 73299540 73299563 -208894101 + AT_rich Low_complexity Low_complexity 1 23 0 463 293 109 64 chr1 73299864 73300287 -208893377 - L1ME LINE L1 -368 5753 5312 424 226 40 65 chr1 73300300 73300424 -208893240 - MIR SINE MIR -108 154 34 304 129 16 32 chr1 73301076 73301138 -208892526 - L2 LINE L2 -73 3240 3180 362 250 229 21 chr1 73301138 73301278 -208892386 + MLT1J LTR MaLR 2 170 -341 636 167 6 26 chr1 73301343 73301499 -208892165 + GA-rich Low_complexity Low_complexity 1 153 0 351 0 0 0 chr1 73301511 73301550 -208892114 + (A)n Simple_repeat Simple_repeat 1 39 0 416 274 72 48 chr1 73301562 73301764 -208891900 + MLT1J LTR MaLR 253 460 -46 240 35 0 0 chr1 73301764 73301793 -208891871 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 208 205 66 66 chr1 73301831 73301953 -208891711 - L2 LINE L2 -124 3189 3068 1410 155 78 29 chr1 73301966 73302275 -208891389 + MER33 DNA MER1_type 1 324 0 446 308 31 19 chr1 73302709 73302868 -208890796 + MIR SINE MIR 20 180 -82 2353 102 0 0 chr1 73302949 73303252 -208890412 - AluSg SINE Alu -7 303 1 200 345 134 46 chr1 73303791 73303949 -208889715 - MIR SINE MIR -50 212 33 2483 73 0 19 chr1 73303949 73304264 -208889400 - AluSg SINE Alu -1 309 1 200 345 134 46 chr1 73304264 73304299 -208889365 - MIR SINE MIR -229 33 2 1660 181 7 14 chr1 73304404 73304692 -208888972 - AluJb SINE Alu -26 286 1 316 201 111 69 chr1 73304860 73305004 -208888660 + MIR SINE MIR 63 212 -50 270 325 119 20 chr1 73305258 73305409 -208888255 - MIR SINE MIR -50 212 47 183 271 0 0 chr1 73305774 73305822 -208887842 - L2 LINE L2 -208 3064 3017 261 319 0 0 chr1 73306531 73306603 -208887061 + L2 LINE L2 3200 3271 -1 519 259 52 23 chr1 73306657 73306831 -208886833 - MIR SINE MIR -5 257 79 505 224 142 33 chr1 73306943 73306984 -208886680 - MIR SINE MIR 0 262 227 183 80 0 0 chr1 73306984 73307009 -208886655 + (TA)n Simple_repeat Simple_repeat 2 26 0 505 224 142 33 chr1 73307009 73307109 -208886555 - MIR SINE MIR -35 227 94 1520 159 47 0 chr1 73307109 73307195 -208886469 + AluJo SINE Alu 34 115 -197 207 0 0 0 chr1 73307195 73307218 -208886446 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1520 159 47 0 chr1 73307218 73307389 -208886275 + AluJo SINE Alu 115 303 -9 505 224 142 33 chr1 73307389 73307429 -208886235 - MIR SINE MIR -168 94 60 989 140 7 0 chr1 73307493 73307643 -208886021 + AluJb SINE Alu 149 299 -13 182 263 20 61 chr1 73307773 73307872 -208885792 + MIR3 SINE MIR 114 208 0 264 311 57 0 chr1 73308592 73308698 -208884966 - MIR SINE MIR -34 228 117 213 121 0 0 chr1 73308783 73308816 -208884848 + (T)n Simple_repeat Simple_repeat 1 33 0 267 306 48 27 chr1 73309094 73309241 -208884423 + MIR SINE MIR 63 212 -50 208 258 94 47 chr1 73309275 73309403 -208884261 - L2 LINE L2 0 3313 3180 429 319 33 43 chr1 73309708 73309984 -208883680 - L2 LINE L2 -998 2316 2044 518 215 158 28 chr1 73310171 73310348 -208883316 + MIR SINE MIR 41 240 -22 180 178 178 0 chr1 73310908 73310953 -208882711 - MIR SINE MIR -66 142 90 185 178 44 22 chr1 73311881 73311926 -208881738 + MIR SINE MIR 101 146 -116 242 344 21 11 chr1 73312060 73312153 -208881511 + MIR3 SINE MIR 3 96 -112 373 276 41 11 chr1 73312168 73312307 -208881357 + MIR SINE MIR 46 185 -23 224 319 44 22 chr1 73312558 73312649 -208881015 - L2 LINE L2 -165 3107 3015 1349 170 9 9 chr1 73312792 73313022 -208880642 + AluJb SINE Alu 11 240 -72 297 259 93 74 chr1 73313128 73313307 -208880357 + MIR SINE MIR 17 198 -64 252 303 0 13 chr1 73313446 73313522 -208880142 - MER5A DNA MER1_type -7 182 108 294 272 19 19 chr1 73313523 73313638 -208880026 - MER5A DNA MER1_type -7 171 59 286 306 63 18 chr1 73313633 73313744 -208879920 - MER5B DNA MER1_type -34 144 29 * 2371 112 0 0 chr1 73314177 73314489 -208879175 - AluSx SINE Alu 0 312 1 279 0 0 0 chr1 73314504 73314535 -208879129 + (CA)n Simple_repeat Simple_repeat 2 32 0 822 261 42 35 chr1 73315235 73315495 -208878169 + MIR SINE MIR 1 262 0 334 313 47 7 chr1 73315498 73315648 -208878016 - MIR SINE MIR -69 193 38 11551 107 10 2 chr1 73315754 73318111 -208875553 + L1PA8A LINE L1 3768 6131 0 22 35 0 0 chr1 73318248 73318277 -208875387 + AT_rich Low_complexity Low_complexity 1 29 0 597 288 9 46 chr1 73318335 73318503 -208875161 + MIR SINE MIR 49 209 -53 1193 218 14 0 chr1 73318503 73318719 -208874945 - MER20 DNA MER1_type 0 219 1 597 288 9 46 chr1 73318719 73318769 -208874895 + MIR SINE MIR 209 259 -3 425 20 0 0 chr1 73319276 73319325 -208874339 - L1PA3 LINE L1 -3 6152 6104 881 20 0 0 chr1 73319325 73319427 -208874237 + L1P LINE L1 4590 4691 -1455 379 270 0 0 chr1 73319442 73319542 -208874122 - L3b LINE CR1 -198 1385 1286 994 208 42 9 chr1 73319618 73319830 -208873834 + MER20 DNA MER1_type 1 219 0 985 293 121 33 chr1 73320696 73321085 -208872579 + L2 LINE L2 2890 3312 -1 1732 179 3 23 chr1 73322092 73322399 -208871265 - AluJo SINE Alu -11 301 1 2188 102 3 3 chr1 73322539 73322824 -208870840 - AluSg SINE Alu -25 285 1 244 154 0 0 chr1 73323212 73323251 -208870413 - L2 LINE L2 -17 3255 3217 246 266 9 64 chr1 73323312 73323421 -208870243 + MIR SINE MIR 81 183 -79 297 328 94 0 chr1 73324828 73324956 -208868708 + MIR SINE MIR 15 154 -108 193 93 0 47 chr1 73325008 73325051 -208868613 + (TA)n Simple_repeat Simple_repeat 1 41 0 1562 198 95 77 chr1 73325079 73325575 -208868089 + MLT1D LTR MaLR 1 505 0 186 43 0 0 chr1 73325629 73325652 -208868012 + (CAT)n Simple_repeat Simple_repeat 1 23 0 5495 72 7 13 chr1 73325664 73326373 -208867291 + L1PA12 LINE L1 5464 6168 0 2957 105 2 9 chr1 73326642 73327080 -208866584 - L1P LINE L1 -1438 4708 4274 2046 88 0 4 chr1 73327500 73327761 -208865903 + AluSx SINE Alu 47 306 -6 498 281 31 71 chr1 73329080 73329276 -208864388 + MIR SINE MIR 55 242 -20 517 264 176 33 chr1 73329386 73329568 -208864096 + MIR SINE MIR 52 259 -3 637 210 68 74 chr1 73329577 73329714 -208863950 - MER5B DNA MER1_type -2 176 39 2084 118 0 0 chr1 73329714 73329994 -208863670 - AluSx SINE Alu -1 311 32 637 210 68 74 chr1 73329994 73330032 -208863632 - MER5B DNA MER1_type -139 39 2 188 294 0 59 chr1 73330985 73331053 -208862611 + L2 LINE L2 3206 3269 -3 249 331 30 0 chr1 73331172 73331281 -208862383 - MIR SINE MIR -69 139 38 359 297 16 55 chr1 73332694 73332822 -208860842 - L2 LINE L2 0 3272 3150 361 326 76 23 chr1 73332841 73333013 -208860651 + MIR3 SINE MIR 20 200 -8 697 141 262 0 chr1 73333238 73333387 -208860277 + MER53 DNA DNA 2 189 0 1007 80 0 0 chr1 73333523 73333648 -208860016 - AluY SINE Alu -13 298 174 2016 138 6 13 chr1 73333857 73334168 -208859496 + AluSx SINE Alu 1 309 -3 268 260 135 0 chr1 73334211 73334307 -208859357 - MER103 DNA DNA -44 122 14 264 224 17 0 chr1 73334391 73334449 -208859215 + L3 LINE CR1 1412 1470 -107 21 82 0 0 chr1 73334797 73334846 -208858818 + AT_rich Low_complexity Low_complexity 1 49 0 2899 167 31 2 chr1 73335614 73336122 -208857542 + L1MB5 LINE L1 5585 6107 -67 1311 171 69 52 chr1 73336164 73336542 -208857122 - MSTA LTR MaLR 0 364 1 198 213 200 27 chr1 73336694 73336769 -208856895 + MIR SINE MIR 175 262 0 893 154 0 22 chr1 73338214 73338350 -208855314 + FLAM_C SINE Alu 1 133 0 271 195 39 52 chr1 73338593 73338670 -208854994 - L2 LINE L2 -3 3310 3235 * 2394 249 66 21 chr1 73338645 73339391 -208854273 - L2 LINE L2 -350 2964 2186 518 291 100 21 chr1 73339494 73339735 -208853929 - MIR SINE MIR 0 262 3 574 314 96 4 chr1 73339814 73340053 -208853611 + MIR SINE MIR 2 262 0 412 293 138 21 chr1 73340747 73340963 -208852701 - MIR SINE MIR -1 261 25 281 280 0 56 chr1 73341026 73341151 -208852513 - FLAM_C SINE Alu -11 122 5 1872 117 0 32 chr1 73341200 73341508 -208852156 + AluSx SINE Alu 13 310 -2 325 302 159 33 chr1 73341620 73341802 -208851862 - MIR SINE MIR -52 210 6 367 252 141 52 chr1 73342448 73342583 -208851081 - MIR3 SINE MIR -41 167 21 1176 181 33 19 chr1 73342592 73342807 -208850857 + MER20 DNA MER1_type 1 218 -1 534 246 84 39 chr1 73342852 73343055 -208850609 - MIR SINE MIR 0 262 51 321 221 171 57 chr1 73343664 73343822 -208849842 - L2 LINE L2 0 3313 3138 204 163 23 0 chr1 73343914 73343957 -208849707 + L2 LINE L2 3266 3309 -4 198 71 0 0 chr1 73344740 73344768 -208848896 + (TC)n Simple_repeat Simple_repeat 1 28 0 416 294 50 6 chr1 73345822 73345982 -208847682 - LTR33 LTR ERVL -7 514 348 804 305 56 7 chr1 73346016 73346285 -208847379 - LTR33 LTR ERVL -235 286 5 2242 95 3 26 chr1 73346358 73346663 -208847001 + AluSx SINE Alu 1 298 -14 220 293 85 94 chr1 73346737 73346843 -208846821 - L3 LINE CR1 -103 1474 1370 290 226 123 38 chr1 73346846 73346952 -208846712 - Charlie8 DNA MER1_type -2270 147 33 599 312 133 78 chr1 73346986 73347771 -208845893 - L3 LINE CR1 -320 1257 430 4937 123 50 8 chr1 73347857 73348681 -208844983 + L1MB2 LINE L1 5310 6167 -4 238 138 0 69 chr1 73348703 73348761 -208844903 - MIR3 SINE MIR -51 157 97 2092 201 126 20 chr1 73399708 73400210 -208793454 - MLT1E3 LTR MaLR -69 555 1 27 0 0 0 chr1 73400356 73400383 -208793281 + AT_rich Low_complexity Low_complexity 1 27 0 801 247 109 17 chr1 73401447 73401686 -208791978 + MIR SINE MIR 2 262 0 477 298 60 33 chr1 73401686 73401901 -208791763 - MIR SINE MIR -27 235 15 342 153 0 0 chr1 73402297 73402356 -208791308 + (CA)n Simple_repeat Simple_repeat 2 60 0 288 222 28 0 chr1 73402367 73402439 -208791225 + AluJ/FRAM SINE Alu 229 302 0 285 259 84 38 chr1 73402923 73403054 -208790610 - L2 LINE L2 -8 3305 3169 260 289 17 87 chr1 73403814 73403987 -208789677 - L2 LINE L2 -919 2395 2235 222 161 0 36 chr1 73404084 73404140 -208789524 + (CTTTA)n Simple_repeat Simple_repeat 2 55 0 804 189 109 0 chr1 73404188 73404389 -208789275 + L1MA8 LINE L1 6067 6289 -2 226 266 31 0 chr1 73404773 73404837 -208788827 + L2 LINE L2 2656 2721 -593 531 0 0 0 chr1 73404837 73404896 -208788768 + (TCTCCC)n Simple_repeat Simple_repeat 3 61 0 6267 80 45 28 chr1 73404904 73406990 -208786674 + SVA Other Other 50 1406 0 428 274 94 43 chr1 73407075 73407404 -208786260 + L2 LINE L2 2837 3182 -131 420 311 73 11 chr1 73410989 73411166 -208782498 - L2 LINE L2 -190 3082 2895 323 291 59 87 chr1 73411556 73411712 -208781952 - L1ME4a LINE L1 -57 6064 5893 2188 110 16 13 chr1 73411712 73412021 -208781643 - AluSg SINE Alu 0 310 1 323 291 59 87 chr1 73412021 73412161 -208781503 - L1ME4a LINE L1 -228 5893 5751 321 299 103 22 chr1 73412199 73412628 -208781036 + L1MC4a LINE L1 4942 5403 -743 357 293 128 74 chr1 73412632 73412904 -208780760 + L1MC4a LINE L1 5405 5708 -2100 2039 140 10 0 chr1 73412904 73413211 -208780453 + AluJo SINE Alu 3 312 0 357 293 128 74 chr1 73413211 73413344 -208780320 + L1MC4a LINE L1 5708 5832 -1976 285 287 69 0 chr1 73413346 73413433 -208780231 + L2 LINE L2 3217 3309 -4 206 244 0 0 chr1 73413529 73413574 -208780090 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 73414240 73414262 -208779402 + GC_rich Low_complexity Low_complexity 1 22 0 342 278 126 39 chr1 73414269 73414499 -208779165 - L1ME4a LINE L1 -505 5616 5367 25 31 0 0 chr1 73414626 73414658 -208779006 + AT_rich Low_complexity Low_complexity 1 32 0 516 293 142 13 chr1 73414899 73415131 -208778533 - MLT1J LTR MaLR -179 332 71 30 59 0 0 chr1 73415254 73415305 -208778359 + AT_rich Low_complexity Low_complexity 1 51 0 1953 163 0 3 chr1 73415997 73416303 -208777361 - AluJo SINE Alu -3 309 5 22 35 0 0 chr1 73416516 73416545 -208777119 + AT_rich Low_complexity Low_complexity 1 29 0 289 218 90 0 chr1 73416657 73416735 -208776929 - L2 LINE L2 0 3313 3229 203 338 0 0 chr1 73416709 73416777 -208776887 - L2 LINE L2 -273 3040 2973 * 677 286 45 26 chr1 73416917 73417159 -208776505 + MIR SINE MIR 4 246 -16 1143 166 72 18 chr1 73417166 73417389 -208776275 - MER46A DNA MER2_type 0 236 2 301 288 29 163 chr1 73417874 73418249 -208775415 + L2 LINE L2 2948 3272 0 1972 147 41 0 chr1 73418298 73418618 -208775046 - MER7A DNA MER2_type -12 334 4 1064 188 10 10 chr1 73418727 73418935 -208774729 + MER3 DNA MER1_type 1 208 -1 21 36 0 0 chr1 73419077 73419105 -208774559 + AT_rich Low_complexity Low_complexity 1 28 0 193 344 151 11 chr1 73419209 73419302 -208774362 + L2 LINE L2 3199 3304 -9 2164 107 7 0 chr1 73419522 73419812 -208773852 + AluSp SINE Alu 6 297 -16 475 303 52 0 chr1 73420940 73421095 -208772569 + L3 LINE CR1 1183 1345 -232 271 252 215 9 chr1 73421466 73421573 -208772091 - MER94 DNA DNA 0 134 6 380 273 4 145 chr1 73421660 73421887 -208771777 + L3 LINE CR1 1361 1555 -22 788 251 177 19 chr1 73422987 73423366 -208770298 - HAL1 LINE L1 -1 2506 2068 1478 274 96 37 chr1 73423475 73424153 -208769511 - HAL1 LINE L1 -581 1926 1198 2228 77 0 45 chr1 73424153 73424464 -208769200 - AluY SINE Alu -14 297 1 1478 274 96 37 chr1 73424464 73424537 -208769127 - HAL1 LINE L1 -1309 1198 1131 666 299 161 69 chr1 73424545 73425385 -208768279 - HAL1 LINE L1 -1569 938 22 2249 102 0 3 chr1 73425684 73425979 -208767685 - AluSq SINE Alu -19 294 1 2289 73 3 22 chr1 73426371 73426684 -208766980 + AluY SINE Alu 1 307 -4 267 310 80 40 chr1 73427683 73427783 -208765881 - L2 LINE L2 -19 3253 3150 405 250 109 22 chr1 73428742 73428926 -208764738 + L1ME LINE L1 5576 5775 -346 2442 81 0 0 chr1 73429007 73429305 -208764359 + AluSx SINE Alu 1 298 -14 806 128 57 0 chr1 73429318 73429459 -208764205 + L1MB2 LINE L1 6021 6169 -2 306 0 0 0 chr1 73429502 73429536 -208764128 + (CA)n Simple_repeat Simple_repeat 1 34 0 595 252 58 7 chr1 73429568 73429723 -208763941 + MIR SINE MIR 56 218 -44 968 311 57 43 chr1 73429830 73430392 -208763272 - L2 LINE L2 -361 2953 2384 2818 208 21 30 chr1 73430398 73431112 -208762552 + L1ME2 LINE L1 5465 6332 -2 690 176 40 0 chr1 73431121 73431246 -208762418 + FLAM_C SINE Alu 2 131 -2 2935 246 54 38 chr1 73431370 73432086 -208761578 + L1M4 LINE L1 3661 4401 -1745 2154 107 3 13 chr1 73432086 73432385 -208761279 + AluSp SINE Alu 1 296 -17 2935 246 54 38 chr1 73432385 73432750 -208760914 + L1M4 LINE L1 4401 4759 -1387 186 305 161 8 chr1 73432983 73433101 -208760563 - L2 LINE L2 -267 3005 2870 1953 88 4 15 chr1 73433253 73433422 -208760242 - AluSx SINE Alu -9 303 137 2216 112 0 3 chr1 73433422 73433725 -208759939 - AluSc SINE Alu -7 302 1 1953 88 4 15 chr1 73433725 73433815 -208759849 - AluSx SINE Alu -175 137 47 614 283 49 31 chr1 73433956 73434182 -208759482 - MIR SINE MIR -29 233 4 193 333 131 41 chr1 73434442 73434830 -208758834 + L2 LINE L2 2252 2674 -640 1595 159 8 8 chr1 73437404 73437564 -208756100 - AluJo SINE Alu -19 293 131 2501 81 0 0 chr1 73437564 73437873 -208755791 - AluY SINE Alu -2 309 1 1595 159 8 8 chr1 73437873 73437969 -208755695 - AluJo SINE Alu -180 132 37 510 331 90 41 chr1 73438532 73439045 -208754619 + L2 LINE L2 2093 2630 -684 187 240 0 130 chr1 73439356 73439456 -208754208 - L2 LINE L2 -8 3264 3178 239 250 18 0 chr1 73440405 73440461 -208753203 - L2 LINE L2 0 3272 3216 412 232 21 42 chr1 73440464 73440559 -208753105 - MIR SINE MIR -88 174 82 937 243 142 5 chr1 73440569 73440787 -208752877 + MIR SINE MIR 3 250 -12 958 187 6 0 chr1 73441398 73441569 -208752095 + MER5B DNA MER1_type 1 172 -6 211 347 58 16 chr1 73441574 73441695 -208751969 + MIR SINE MIR 12 137 -125 230 294 110 28 chr1 73442130 73442239 -208751425 - L2 LINE L2 -18 3254 3137 236 250 31 0 chr1 73442589 73442653 -208751011 + MIR SINE MIR 100 165 -97 2044 143 10 3 chr1 73442688 73442996 -208750668 + AluSx SINE Alu 1 310 -2 1752 178 0 0 chr1 73443326 73443602 -208750062 + AluJo SINE Alu 1 276 -36 1175 40 0 7 chr1 73443609 73443759 -208749905 + (GAA)n Simple_repeat Simple_repeat 2 150 0 5465 42 1 5 chr1 73443934 73444603 -208749061 - L1PA5 LINE L1 0 6154 5488 1000 269 205 27 chr1 73444653 73445208 -208748456 + L3 LINE CR1 913 1566 -11 592 120 0 30 chr1 73445313 73445413 -208748251 - AluJ/FRAM SINE Alu 0 312 216 * 669 139 0 0 chr1 73445409 73445510 -208748154 - AluSg/x SINE Alu -125 187 87 2129 146 100 14 chr1 73445515 73445954 -208747710 - LTR54B LTR ERV1 -21 477 1 1200 208 21 4 chr1 73448413 73448654 -208745010 + MIR SINE MIR 18 262 0 286 276 69 0 chr1 73448755 73448842 -208744822 + MIR SINE MIR 87 179 -83 36 70 0 0 chr1 73448883 73448954 -208744710 + AT_rich Low_complexity Low_complexity 1 71 0 395 207 92 0 chr1 73449354 73449441 -208744223 + L2 LINE L2 3169 3263 -9 237 258 30 15 chr1 73450430 73450496 -208743168 - MIR SINE MIR -111 151 85 216 397 0 0 chr1 73451206 73451274 -208742390 - L3 LINE CR1 -93 1484 1417 295 301 89 24 chr1 73451350 73451473 -208742191 - MIR SINE MIR -112 150 20 346 340 125 38 chr1 73451590 73451878 -208741786 - L3 LINE CR1 -260 1317 1005 1927 117 119 78 chr1 73451950 73452149 -208741515 + MSTB1 LTR MaLR 6 195 -237 1802 173 7 0 chr1 73452149 73452450 -208741214 + AluJo SINE Alu 1 303 -9 1927 117 119 78 chr1 73452450 73452660 -208741004 + MSTB1 LTR MaLR 195 432 0 233 298 36 12 chr1 73453435 73453519 -208740145 + L1MEc LINE L1 546 631 -5765 2097 264 52 38 chr1 73453521 73453657 -208740007 + L1MEc LINE L1 692 825 -5571 2336 91 0 16 chr1 73453657 73453965 -208739699 + AluSx SINE Alu 1 303 -9 2097 264 52 38 chr1 73453965 73454789 -208738875 + L1MEc LINE L1 825 1666 -4730 840 251 61 123 chr1 73454781 73455084 -208738580 + L1MEc LINE L1 3437 3712 -2503 * 4617 38 0 0 chr1 73455084 73455640 -208738024 + L1PA4 LINE L1 5597 6152 -3 840 251 61 123 chr1 73455640 73455727 -208737937 + L1MEc LINE L1 3712 3803 -2412 28 61 0 0 chr1 73455732 73455781 -208737883 + AT_rich Low_complexity Low_complexity 1 49 0 239 224 35 0 chr1 73455784 73455842 -208737822 - L1M4 LINE L1 -2295 3851 3792 375 231 154 26 chr1 73455876 73456032 -208737632 + L1MEc LINE L1 3849 4024 -2191 15159 205 21 40 chr1 73456038 73460225 -208733439 + L1PA11 LINE L1 59 4325 -2136 8409 122 7 12 chr1 73460225 73462361 -208731303 + L1PA11 LINE L1 4349 6488 -1 15159 205 21 40 chr1 73462361 73462404 -208731260 + L1PA11 LINE L1 4325 4367 -2094 21 0 0 0 chr1 73462404 73462425 -208731239 + AT_rich Low_complexity Low_complexity 1 21 0 15159 205 21 40 chr1 73462425 73462669 -208730995 + L1PA11 LINE L1 4367 4449 -2012 570 237 133 6 chr1 73462669 73462842 -208730822 + L2 LINE L2 3118 3312 -1 7782 48 0 0 chr1 73462890 73464170 -208729494 - L1PA6 LINE L1 -2 6152 4873 1969 208 48 24 chr1 73464419 73464875 -208728789 + MLT1C LTR MaLR 1 467 0 216 320 170 20 chr1 73465765 73465865 -208727799 + MIR SINE MIR 20 134 -74 360 375 139 19 chr1 73466692 73466834 -208726830 + L2 LINE L2 2951 3075 -197 2523 237 36 12 chr1 73466834 73467411 -208726253 - MLT1E LTR MaLR -2 591 1 360 375 139 19 chr1 73467411 73467527 -208726137 + L2 LINE L2 3075 3240 -32 309 269 28 37 chr1 73468056 73468164 -208725500 + MLT1H LTR MaLR 431 537 -12 571 357 15 15 chr1 73468430 73468702 -208724962 + MLT2E LTR ERVL 353 624 -4 758 238 119 89 chr1 73469186 73469237 -208724427 + MLT1L LTR MaLR 153 201 -414 2041 138 10 0 chr1 73469237 73469527 -208724137 + AluSq SINE Alu 1 293 -20 758 238 119 89 chr1 73469527 73469912 -208723752 + MLT1L LTR MaLR 201 602 -13 2108 129 3 0 chr1 73470142 73470444 -208723220 - AluSx SINE Alu -9 303 1 532 259 18 12 chr1 73470949 73471115 -208722549 + MIR SINE MIR 74 240 -22 219 233 0 33 chr1 73471315 73471375 -208722289 + L2 LINE L2 3214 3271 -1 938 166 0 0 chr1 73472541 73472713 -208720951 + AluJb SINE Alu 145 316 0 201 309 0 0 chr1 73472760 73472815 -208720849 + MIR SINE MIR 187 241 -21 279 295 0 71 chr1 73472885 73472952 -208720712 - MER5A DNA MER1_type -78 111 54 2497 47 17 0 chr1 73472952 73473250 -208720414 + AluY SINE Alu 1 303 -8 279 295 0 71 chr1 73473250 73473294 -208720370 - MER5A DNA MER1_type -135 54 8 1052 141 0 27 chr1 73473544 73473729 -208719935 + AluSg/x SINE Alu 130 309 -1 483 370 27 14 chr1 73474423 73474718 -208718946 - L3b LINE CR1 -130 1453 1155 527 254 43 152 chr1 73475180 73475413 -208718251 - MLT1L LTR MaLR -15 590 302 1718 139 68 31 chr1 73475413 73475707 -208717957 + AluJo SINE Alu 1 305 -7 527 254 43 152 chr1 73475707 73475776 -208717888 - MLT1L LTR MaLR -303 302 227 34 42 0 0 chr1 73475990 73476038 -208717626 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr1 73476978 73476998 -208716666 + (A)n Simple_repeat Simple_repeat 1 20 0 1752 257 84 24 chr1 73477347 73477849 -208715815 - MLT1H LTR MaLR -6 543 12 214 176 0 0 chr1 73477926 73477960 -208715704 - L2 LINE L2 -36 3236 3203 45747 34 0 1 chr1 73477993 73484153 -208709511 + L1PA3 LINE L1 1 6155 0 34 55 0 0 chr1 73484169 73484224 -208709440 + AT_rich Low_complexity Low_complexity 1 55 0 358 275 42 8 chr1 73484415 73484535 -208709129 + L2 LINE L2 3175 3298 -15 451 326 36 59 chr1 73485083 73485390 -208708274 - L2 LINE L2 -166 3106 2807 528 300 108 18 chr1 73485695 73485918 -208707746 + MIR SINE MIR 20 262 0 564 213 130 54 chr1 73486285 73486524 -208707140 + MIR SINE MIR 5 261 -1 335 198 121 0 chr1 73486693 73486784 -208706880 - MIR SINE MIR -64 198 97 192 77 0 0 chr1 73487466 73487492 -208706172 + (CA)n Simple_repeat Simple_repeat 1 26 0 890 144 0 0 chr1 73488242 73488360 -208705304 + FLAM_C SINE Alu 1 118 -15 28 29 0 0 chr1 73488361 73488396 -208705268 + AT_rich Low_complexity Low_complexity 1 35 0 2253 47 4 4 chr1 73488800 73489075 -208704589 - AluY SINE Alu 0 311 37 191 264 144 72 chr1 73489191 73489316 -208704348 + MER5A DNA MER1_type 34 167 -22 270 222 34 103 chr1 73489337 73489464 -208704200 - MER5A DNA MER1_type -10 168 60 4937 163 16 8 chr1 73489464 73489876 -208703788 - L1MA8 LINE L1 -1 6290 5883 285 29 0 0 chr1 73489876 73489910 -208703754 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 2001 118 14 0 chr1 73489910 73490189 -208703475 - AluSq SINE Alu -30 283 1 4937 163 16 8 chr1 73490189 73490634 -208703030 - L1MA8 LINE L1 -407 5884 5425 507 267 108 0 chr1 73490901 73491087 -208702577 + MIR SINE MIR 2 204 -58 502 238 114 36 chr1 73491122 73491322 -208702342 - MIR SINE MIR -33 229 19 300 254 0 0 chr1 73492231 73492298 -208701366 - MIR SINE MIR -148 114 48 23 54 0 0 chr1 73492351 73492388 -208701276 + AT_rich Low_complexity Low_complexity 1 37 0 433 295 201 37 chr1 73492567 73492974 -208700690 - L1MC4a LINE L1 -1886 5922 5449 487 290 23 51 chr1 73492993 73493210 -208700454 - L2 LINE L2 0 3313 3103 1792 276 105 17 chr1 73493917 73494608 -208699056 - L2 LINE L2 -226 3087 2330 427 331 116 43 chr1 73495358 73495807 -208697857 - L2 LINE L2 -86 3186 2717 1735 192 26 55 chr1 73495860 73496245 -208697419 - MLT1A2 LTR MaLR 0 374 1 279 299 82 15 chr1 73496325 73496459 -208697205 + MIR SINE MIR 51 193 -69 1622 140 102 71 chr1 73496489 73496853 -208696811 - THE1C LTR MaLR 0 375 1 2706 133 48 14 chr1 73498208 73498622 -208695042 - MSTA LTR MaLR 0 428 1 217 234 0 0 chr1 73498635 73498682 -208694982 - MIR SINE MIR -122 140 94 2273 83 38 0 chr1 73498685 73498973 -208694691 + AluSp SINE Alu 1 299 -14 255 238 119 53 chr1 73499332 73499421 -208694243 + MLT1J LTR MaLR 343 447 -64 1149 211 72 0 chr1 73499421 73499630 -208694034 - MER58A DNA MER1_type 0 224 1 255 238 119 53 chr1 73499630 73499691 -208693973 + MLT1J LTR MaLR 447 503 -8 6183 223 26 42 chr1 73501838 73503488 -208690176 + L1PBb LINE L1 709 2384 -3819 2562 35 0 0 chr1 73503488 73503771 -208689893 - L1PA5 LINE L1 -7 6147 5865 6183 223 26 42 chr1 73503771 73503852 -208689812 + L1PBb LINE L1 2384 2465 -3738 1509 208 17 7 chr1 73503852 73504141 -208689523 - AluJb SINE Alu -20 292 1 6183 223 26 42 chr1 73504141 73505162 -208688502 + L1PBb LINE L1 2465 3508 -2695 1180 133 0 0 chr1 73505167 73505333 -208688331 - AluSg/x SINE Alu -21 291 126 2174 258 76 24 chr1 73505395 73505463 -208688201 + L1M4 LINE L1 3015 3078 -3068 1328 39 0 0 chr1 73505463 73505617 -208688047 + L1PA6 LINE L1 6000 6153 -1 2174 258 76 24 chr1 73505617 73506582 -208687082 + L1M4 LINE L1 3078 4119 -2027 2018 142 13 7 chr1 73506623 73506933 -208686731 + AluSq SINE Alu 1 312 -1 506 46 35 23 chr1 73506965 73507052 -208686612 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 243 299 113 10 chr1 73507203 73507300 -208686364 + L2 LINE L2 3200 3306 -7 1585 267 106 17 chr1 73507333 73507885 -208685779 - MLT1H1 LTR MaLR -1 554 2 26 74 0 0 chr1 73507943 73507997 -208685667 + AT_rich Low_complexity Low_complexity 1 54 0 2208 90 21 7 chr1 73508086 73508376 -208685288 - AluSx SINE Alu -17 295 2 1864 175 3 0 chr1 73509055 73509364 -208684300 + AluJo SINE Alu 1 310 -2 2155 124 13 0 chr1 73509877 73510176 -208683488 + AluSx SINE Alu 1 303 -9 436 254 152 0 chr1 73510277 73510442 -208683222 - MIR SINE MIR -2 260 71 2263 95 7 16 chr1 73510511 73510816 -208682848 + AluSx SINE Alu 1 302 -10 258 232 32 56 chr1 73511079 73511204 -208682460 - L1MC4 LINE L1 0 8042 7921 2104 128 0 3 chr1 73511232 73511528 -208682136 - AluSx SINE Alu -17 295 1 320 331 83 0 chr1 73512113 73512246 -208681418 + MIR SINE MIR 69 212 -50 2299 91 0 7 chr1 73512267 73512563 -208681101 - AluSg1 SINE Alu -15 294 1 625 286 0 16 chr1 73512599 73512781 -208680883 - MIR SINE MIR -73 189 11 1107 189 38 5 chr1 73512783 73512995 -208680669 + MER20 DNA MER1_type 1 219 0 463 306 64 57 chr1 73514328 73514593 -208679071 - L3 LINE CR1 -1 1576 1310 783 281 28 0 chr1 73515237 73515490 -208678174 + MIR SINE MIR 2 261 -1 291 154 19 0 chr1 73515533 73515585 -208678079 - MLT2B1 LTR ERVL -1 514 462 1307 192 11 118 chr1 73515667 73516016 -208677648 - MLT2B1 LTR ERVL -37 483 172 371 235 143 0 chr1 73516299 73516397 -208677267 + MER96 DNA MER1_type? 64 175 0 426 285 31 0 chr1 73516397 73516527 -208677137 + MIR3 SINE MIR 52 185 -23 800 258 85 49 chr1 73516899 73517264 -208676400 - MLT1J1 LTR MaLR -44 402 25 2396 143 70 2 chr1 73517334 73517732 -208675932 + MSTB LTR MaLR 2 426 0 551 263 54 89 chr1 73517913 73518172 -208675492 + MIR SINE MIR 13 262 0 2532 42 0 6 chr1 73518192 73518505 -208675159 + AluY SINE Alu 1 311 0 397 284 142 21 chr1 73519132 73519322 -208674342 + MIR SINE MIR 50 262 0 1470 176 10 27 chr1 73519944 73520239 -208673425 - AluJo SINE Alu -22 290 1 436 223 27 27 chr1 73520372 73520484 -208673180 - MIR3 SINE MIR -52 156 45 319 45 0 0 chr1 73521061 73521105 -208672559 - L1MA9 LINE L1 0 6312 6269 1136 124 0 0 chr1 73521106 73521267 -208672397 + AluSg/x SINE Alu 137 297 -15 5594 175 25 9 chr1 73521267 73522411 -208671253 - L1MA9 LINE L1 -40 6272 5112 520 286 119 24 chr1 73522439 73522659 -208671005 - MIR SINE MIR -1 261 31 375 246 62 39 chr1 73523638 73523768 -208669896 - MIR SINE MIR -46 216 84 301 254 24 48 chr1 73524320 73524446 -208669218 + LTR33A LTR ERVL 415 523 0 222 333 41 41 chr1 73524677 73524800 -208668864 + MIR SINE MIR 16 138 -70 1603 199 170 51 chr1 73525047 73525499 -208668165 + MLT1F LTR MaLR 1 506 -36 258 355 70 60 chr1 73526065 73526468 -208667196 + L2 LINE L2 2831 3237 -35 1265 120 0 0 chr1 73526640 73526824 -208666840 + AluSg/x SINE Alu 127 310 0 561 271 62 95 chr1 73526840 73527272 -208666392 + MLT1K LTR MaLR 171 588 0 1887 131 0 0 chr1 73527942 73528216 -208665448 + AluSx SINE Alu 38 311 -1 391 315 115 6 chr1 73528684 73528849 -208664815 + MIR SINE MIR 51 233 -29 2086 84 7 7 chr1 73528852 73529139 -208664525 - AluSc SINE Alu -21 288 2 1492 204 76 39 chr1 73529444 73529863 -208663801 - MLT1C LTR MaLR -1 466 21 683 205 33 20 chr1 73529863 73530014 -208663650 - MIR SINE MIR -101 161 9 1846 145 10 0 chr1 73530070 73530366 -208663298 - AluJb SINE Alu -13 299 1 384 325 53 37 chr1 73530375 73530563 -208663101 - MIR SINE MIR -70 192 2 411 243 250 7 chr1 73530925 73531061 -208662603 + MIR3 SINE MIR 2 170 -38 198 0 0 0 chr1 73531466 73531488 -208662176 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 794 250 29 0 chr1 73532149 73532321 -208661343 + MIR SINE MIR 58 234 -28 674 198 16 0 chr1 73532475 73532596 -208661068 + MER63A DNA MER1_type 63 185 -25 277 235 216 52 chr1 73532941 73533094 -208660570 + L2 LINE L2 3136 3313 0 3500 237 27 5 chr1 73534030 73534774 -208658890 + MST-int LTR MaLR 828 1587 -64 734 57 0 0 chr1 73534774 73534862 -208658802 + AluY SINE Alu 2 89 -222 2069 59 4 0 chr1 73534862 73535117 -208658547 - AluSp SINE Alu -57 256 1 492 288 109 19 chr1 73535323 73535544 -208658120 - MIR SINE MIR -13 249 11 477 278 124 38 chr1 73536023 73536139 -208657525 + MIR SINE MIR 33 138 -124 2183 115 0 3 chr1 73536139 73536444 -208657220 + AluSx SINE Alu 1 304 -8 477 278 124 38 chr1 73536444 73536536 -208657128 + MIR SINE MIR 138 259 -3 264 196 0 0 chr1 73536915 73536961 -208656703 - L2 LINE L2 -18 3254 3209 1622 174 3 3 chr1 73538299 73538581 -208655083 - AluJo SINE Alu -30 282 1 624 274 186 31 chr1 73539029 73539255 -208654409 + MIR SINE MIR 2 262 0 205 314 264 32 chr1 73539331 73540108 -208653556 + L2 LINE L2 1684 2640 -674 184 346 0 0 chr1 73540468 73540520 -208653144 - MIR SINE MIR -166 96 45 1457 177 13 61 chr1 73540623 73540933 -208652731 - AluJo SINE Alu -17 295 1 460 285 39 8 chr1 73540989 73541119 -208652545 - MIR SINE MIR -107 155 22 907 299 78 26 chr1 73541242 73541664 -208652000 + MLT1L LTR MaLR 172 615 0 812 203 113 54 chr1 73541770 73541992 -208651672 + MER46A DNA MER2_type 2 236 0 483 283 136 30 chr1 73541993 73542191 -208651473 + MIR SINE MIR 11 229 -33 274 186 0 0 chr1 73542286 73542329 -208651335 + MER94 DNA DNA 1 43 -91 409 326 129 28 chr1 73543310 73543743 -208649921 + MLT1K LTR MaLR 104 580 -8 478 145 13 0 chr1 73543926 73544002 -208649662 + MER116 DNA Mariner 1 77 -3 1916 151 0 16 chr1 73544025 73544342 -208649322 - AluJb SINE Alu 0 312 1 472 352 45 42 chr1 73544374 73544632 -208649032 + L2 LINE L2 2516 2777 -537 1762 138 0 63 chr1 73544632 73544950 -208648714 + AluSx SINE Alu 3 300 -12 472 352 45 42 chr1 73544950 73545069 -208648595 + L2 LINE L2 2777 2894 -420 340 256 122 99 chr1 73545120 73545292 -208648372 + MLT2E LTR ERVL 1 176 -452 259 339 63 46 chr1 73545372 73545546 -208648118 - L2 LINE L2 -2 3270 3094 402 175 147 42 chr1 73545590 73545733 -208647931 - MLT1J LTR MaLR -35 476 319 266 279 130 45 chr1 73545856 73546010 -208647654 - MLT1J LTR MaLR -342 169 3 287 313 25 0 chr1 73546083 73546163 -208647501 - L2 LINE L2 -236 3036 2955 1985 122 3 7 chr1 73546728 73547024 -208646640 - AluSx SINE Alu -17 295 1 508 221 190 25 chr1 73547846 73548004 -208645660 - L2 LINE L2 -2 3311 3128 251 221 310 28 chr1 73548815 73548960 -208644704 + MIR SINE MIR 29 214 -48 2395 78 0 0 chr1 73548969 73549276 -208644388 + AluY SINE Alu 1 307 -4 461 313 61 39 chr1 73549333 73549563 -208644101 + L3 LINE CR1 1320 1554 -23 647 277 33 16 chr1 73549599 73549783 -208643881 + MIR SINE MIR 12 198 -64 333 0 0 0 chr1 73550246 73550283 -208643381 + (CA)n Simple_repeat Simple_repeat 1 37 0 876 116 0 0 chr1 73550716 73550845 -208642819 - FLAM_C SINE Alu -12 131 3 313 347 14 61 chr1 73550847 73551060 -208642604 + MLT1K LTR MaLR 63 265 -323 470 355 6 0 chr1 73551104 73551273 -208642391 + MLT1K LTR MaLR 356 525 -63 1821 167 10 0 chr1 73551355 73551649 -208642015 - AluJb SINE Alu -15 297 1 367 209 131 47 chr1 73552021 73552212 -208641452 - MLT1K LTR MaLR -1 587 381 937 292 158 14 chr1 73552422 73552789 -208640875 + LTR16C LTR ERVL 72 491 0 564 151 28 28 chr1 73553564 73553743 -208639921 + (TG)n Simple_repeat Simple_repeat 2 180 0 434 107 65 30 chr1 73553781 73553950 -208639714 + (TG)n Simple_repeat Simple_repeat 1 175 0 227 138 46 15 chr1 73553971 73554036 -208639628 + (TG)n Simple_repeat Simple_repeat 1 67 0 495 108 63 22 chr1 73554055 73554278 -208639386 + (TG)n Simple_repeat Simple_repeat 1 231 0 3459 60 2 11 chr1 73554503 73554955 -208638709 - LTR7 LTR ERV1 -2 448 1 2716 63 45 13 chr1 73554955 73555335 -208638329 - HERVH LTR ERV1 0 7713 7322 1421 115 23 14 chr1 73555333 73555551 -208638113 - HERVH LTR ERV1 -1894 5819 5600 * 4501 134 1 1 chr1 73555552 73556214 -208637450 - HERVH LTR ERV1 -2564 5149 4488 3469 105 2 4 chr1 73556216 73556711 -208636953 - HERVH LTR ERV1 -3720 3993 3500 902 144 7 0 chr1 73556714 73556860 -208636804 - HERVH LTR ERV1 -4427 3286 3140 * 21027 86 14 28 chr1 73556839 73559876 -208633788 - HERVH LTR ERV1 -4718 2995 1 3427 59 16 7 chr1 73559878 73560322 -208633342 - LTR7 LTR ERV1 -2 448 1 405 0 0 0 chr1 73560569 73560614 -208633050 + (TA)n Simple_repeat Simple_repeat 1 45 0 200 301 42 49 chr1 73560637 73560780 -208632884 - L2 LINE L2 -67 3246 3105 389 309 99 0 chr1 73560968 73561130 -208632534 - MIR SINE MIR -72 190 13 184 242 129 0 chr1 73561775 73561837 -208631827 + L2 LINE L2 3243 3312 -1 210 167 74 19 chr1 73561847 73561901 -208631763 + MIR SINE MIR 132 188 -74 281 153 0 17 chr1 73561936 73561995 -208631669 + CT-rich Low_complexity Low_complexity 1 58 0 197 62 0 31 chr1 73562135 73562167 -208631497 + (CCCCCA)n Simple_repeat Simple_repeat 5 35 0 223 303 193 25 chr1 73562516 73562635 -208631029 + L2 LINE L2 3134 3272 0 283 226 46 24 chr1 73564060 73564145 -208629519 + MIR SINE MIR 99 185 -63 2107 115 20 3 chr1 73564228 73564508 -208629156 + AluSq SINE Alu 1 288 -25 240 35 0 0 chr1 73564508 73564537 -208629127 + (CA)n Simple_repeat Simple_repeat 2 30 0 2107 115 20 3 chr1 73564537 73564560 -208629104 + AluSq SINE Alu 288 309 -4 1724 184 10 0 chr1 73564623 73564911 -208628753 + AluJo SINE Alu 11 301 -11 4159 197 26 5 chr1 73564957 73566480 -208627184 + L1MB3 LINE L1 4272 5829 -354 1243 121 11 16 chr1 73566481 73566671 -208626993 + AluJo SINE Alu 85 273 -39 489 97 0 0 chr1 73566673 73566745 -208626919 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 1708 157 72 9 chr1 73566745 73567090 -208626574 + L1MB3 LINE L1 5817 6183 0 252 125 88 0 chr1 73567479 73567559 -208626105 + (TA)n Simple_repeat Simple_repeat 1 87 0 390 287 9 28 chr1 73568158 73568266 -208625398 - MER5B DNA MER1_type -72 106 1 334 317 40 20 chr1 73568439 73568540 -208625124 - MIR SINE MIR -83 125 23 511 209 0 0 chr1 73569115 73569225 -208624439 - Tigger4(Zombi) DNA MER2_type -2621 110 1 1116 124 66 58 chr1 73569322 73569580 -208624084 - L1MA9 LINE L1 -3 6309 6050 34 0 0 0 chr1 73569677 73569711 -208623953 + AT_rich Low_complexity Low_complexity 1 34 0 2256 74 39 0 chr1 73569718 73570001 -208623663 - AluY SINE Alu -9 302 9 439 207 41 15 chr1 73570557 73570679 -208622985 - MIR SINE MIR -64 144 21 1704 191 3 25 chr1 73570922 73571241 -208622423 - AluJb SINE Alu 0 312 1 437 255 122 25 chr1 73572380 73572576 -208621088 - MIR SINE MIR -14 248 34 490 246 30 18 chr1 73572655 73572822 -208620842 - MER112 DNA MER1_type -91 169 1 913 164 123 10 chr1 73572973 73573168 -208620496 - MER58A DNA MER1_type -2 222 6 1276 237 68 75 chr1 73573334 73573878 -208619786 - MLT1F1 LTR MaLR 0 567 3 390 224 167 32 chr1 73573897 73574053 -208619611 - L2 LINE L2 0 3313 3137 1062 227 31 64 chr1 73574065 73574385 -208619279 + MLT1A2 LTR MaLR 19 327 -47 2031 102 0 0 chr1 73574385 73574639 -208619025 + AluSg SINE Alu 1 254 -56 1062 227 31 64 chr1 73574639 73574675 -208618989 + MLT1A2 LTR MaLR 327 363 -11 922 288 153 11 chr1 73574683 73575196 -208618468 - L2 LINE L2 -167 3146 2552 403 310 117 12 chr1 73575296 73575467 -208618197 + MIR3 SINE MIR 20 208 0 417 261 171 35 chr1 73576097 73576296 -208617368 - MIR SINE MIR -7 255 30 921 257 8 33 chr1 73576540 73576781 -208616883 + MIR SINE MIR 28 262 0 2438 88 0 0 chr1 73577166 73577462 -208616202 + AluSc SINE Alu 1 296 -13 226 187 0 154 chr1 73577561 73577652 -208616012 - Charlie8 DNA MER1_type -2255 162 86 6464 22 0 0 chr1 73577723 73578464 -208615200 + L1PA3 LINE L1 5412 6152 -3 1141 228 27 59 chr1 73578786 73578979 -208614685 - L1 LINE L1 -743 5403 5228 1611 193 11 18 chr1 73578979 73579264 -208614400 - AluJo SINE Alu -19 293 11 1141 228 27 59 chr1 73579264 73579478 -208614186 - L1 LINE L1 -918 5228 5009 2054 113 0 4 chr1 73579793 73580068 -208613596 + AluSp SINE Alu 1 274 -39 1504 184 41 24 chr1 73580669 73580963 -208612701 + AluJo SINE Alu 1 299 -13 6641 120 27 11 chr1 73580989 73582958 -208610706 - L1MA2 LINE L1 0 6304 4299 517 276 66 83 chr1 73583437 73583905 -208609759 + LTR33A LTR ERVL 60 519 -4 278 274 53 0 chr1 73584041 73584136 -208609528 - MER110 LTR ERV1 -19 472 373 192 278 0 0 chr1 73585380 73585452 -208608212 + (TA)n Simple_repeat Simple_repeat 2 73 0 341 323 30 12 chr1 73585455 73585619 -208608045 - L1ME LINE L1 -481 5640 5474 367 310 129 12 chr1 73585683 73585854 -208607810 - L1 LINE L1 -1222 4924 4734 298 285 64 73 chr1 73586589 73586766 -208606898 - MER5B DNA MER1_type -1 188 2 1359 166 0 0 chr1 73586826 73587047 -208606617 - AluJo SINE Alu 0 304 84 5846 115 27 19 chr1 73587682 73588136 -208605528 + Tigger1 DNA MER2_type 12 461 -1957 1876 127 40 7 chr1 73588136 73588434 -208605230 - AluSx SINE Alu 0 307 1 5846 115 27 19 chr1 73588434 73588935 -208604729 + Tigger1 DNA MER2_type 461 976 -1442 399 100 17 0 chr1 73588958 73589018 -208604646 - U7 snRNA snRNA -1 62 2 * 3714 109 32 13 chr1 73589013 73589442 -208604222 + Tigger1 DNA MER2_type 957 1402 -1016 2009 150 7 0 chr1 73589442 73589736 -208603928 - AluSx SINE Alu -16 296 1 3714 109 32 13 chr1 73589736 73589904 -208603760 + Tigger1 DNA MER2_type 1402 1565 -853 2412 107 52 24 chr1 73589922 73590342 -208603322 - MER51D LTR ERV1 -74 583 152 2280 92 51 62 chr1 73590342 73590610 -208603054 - L1PA11 LINE L1 0 6174 5910 2549 80 0 0 chr1 73590610 73590921 -208602743 - AluY SINE Alu 0 311 1 2280 92 51 62 chr1 73590921 73591041 -208602623 - L1PA11 LINE L1 -264 5910 5790 5431 120 14 6 chr1 73591041 73591264 -208602400 + Tigger1 DNA MER2_type 1555 1775 -643 2177 70 3 31 chr1 73591264 73591551 -208602113 + AluSx SINE Alu 15 293 -19 5431 120 14 6 chr1 73591551 73592184 -208601480 + Tigger1 DNA MER2_type 1775 2418 0 232 25 75 0 chr1 73593517 73593557 -208600107 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5892 49 0 0 chr1 73593557 73594270 -208599394 - L1PA5 LINE L1 -11 6143 5431 2517 69 3 0 chr1 73594485 73594790 -208598874 - AluY SINE Alu -5 306 1 254 245 102 71 chr1 73595082 73595180 -208598484 + MIR SINE MIR 84 184 -78 710 270 126 14 chr1 73595653 73595875 -208597789 + MIR SINE MIR 16 262 0 26 0 0 0 chr1 73595877 73595903 -208597761 + AT_rich Low_complexity Low_complexity 1 26 0 1738 88 77 0 chr1 73595911 73596185 -208597479 - L1MA2 LINE L1 -2 6302 6008 222 323 65 65 chr1 73596199 73596323 -208597341 - MIR SINE MIR -133 129 6 311 293 9 9 chr1 73596748 73596854 -208596810 - MIR SINE MIR -123 139 34 243 0 0 0 chr1 73596953 73596980 -208596684 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 57 28 38 chr1 73598507 73598613 -208595051 + (GAAA)n Simple_repeat Simple_repeat 2 106 0 395 338 96 18 chr1 73598884 73599165 -208594499 + HAL1b LINE L1 42 344 -1004 474 224 70 51 chr1 73599264 73599420 -208594244 + HAL1b LINE L1 429 587 -761 602 270 63 11 chr1 73599439 73599709 -208593955 + HAL1b LINE L1 666 949 -399 533 209 59 20 chr1 73599749 73599902 -208593762 + HAL1b LINE L1 1161 1319 -29 591 265 130 26 chr1 73599921 73600363 -208593301 + MLT1H LTR MaLR 1 549 0 1163 63 0 0 chr1 73600425 73600583 -208593081 - L1P4 LINE L1 -359 5809 5652 21 0 0 0 chr1 73600589 73600610 -208593054 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr1 73600658 73600705 -208592959 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 1047 226 37 25 chr1 73601016 73601083 -208592581 - MLT1F LTR MaLR -3 564 499 2221 119 3 0 chr1 73601083 73601394 -208592270 + AluSp SINE Alu 1 312 -1 1047 226 37 25 chr1 73601394 73601806 -208591858 - MLT1F LTR MaLR -68 499 19 1620 157 31 0 chr1 73602666 73602790 -208590874 + AluJb SINE Alu 1 120 -192 790 39 15 39 chr1 73602790 73602920 -208590744 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 1620 157 31 0 chr1 73602920 73603050 -208590614 + AluJb SINE Alu 120 263 -49 450 0 0 0 chr1 73603062 73603112 -208590552 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 336 171 0 0 chr1 73603908 73603970 -208589694 - Alu SINE Alu -250 53 1 2112 182 2 15 chr1 73604174 73604569 -208589095 - MLT1B LTR MaLR 0 390 1 569 297 47 92 chr1 73604710 73605204 -208588460 + L2 LINE L2 2791 3260 -12 1718 138 78 16 chr1 73605224 73605594 -208588070 - L1MA9 LINE L1 -1 6311 5919 779 244 88 15 chr1 73605713 73605975 -208587689 - LTR67 LTR ERVL -4 553 273 611 251 101 49 chr1 73606121 73606368 -208587296 - LTR67 LTR ERVL -296 261 2 198 103 0 0 chr1 73606431 73606460 -208587204 + (TG)n Simple_repeat Simple_repeat 2 30 0 577 207 49 55 chr1 73608518 73608682 -208584982 + MER103 DNA DNA 2 164 -2 216 257 0 0 chr1 73610189 73610259 -208583405 + (TG)n Simple_repeat Simple_repeat 1 70 0 321 290 130 0 chr1 73610823 73610923 -208582741 + L2 LINE L2 3199 3311 -2 254 415 34 27 chr1 73611072 73611219 -208582445 - L2 LINE L2 -23 3249 3102 1930 230 70 17 chr1 73611787 73612353 -208581311 - L1ME2 LINE L1 -67 6166 5632 2110 182 74 29 chr1 73612353 73612621 -208581043 - MLT1C LTR MaLR 0 467 213 470 78 0 0 chr1 73612621 73612685 -208580979 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2184 106 0 0 chr1 73612685 73612967 -208580697 - AluSg SINE Alu -28 282 1 2110 182 74 29 chr1 73612967 73613142 -208580522 - MLT1C LTR MaLR -253 214 3 1930 230 70 17 chr1 73613142 73613382 -208580282 - L1ME2 LINE L1 -601 5632 5332 298 252 54 18 chr1 73613421 73613532 -208580132 - L1ME2 LINE L1 -1037 5178 5064 243 0 0 0 chr1 73613532 73613559 -208580105 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 831 160 7 60 chr1 73613562 73613712 -208579952 - FRAM SINE Alu -30 146 5 5684 247 70 10 chr1 73613732 73615706 -208577958 - L1ME2 LINE L1 -2040 4175 2119 1337 103 0 0 chr1 73615708 73615882 -208577782 - AluSg/x SINE Alu -5 307 134 893 205 12 12 chr1 73615916 73616077 -208577587 + FRAM SINE Alu 2 162 -4 775 267 53 35 chr1 73616095 73616225 -208577439 - L1ME2 LINE L1 -4439 1957 1831 1577 178 56 7 chr1 73616225 73616511 -208577153 + AluJb SINE Alu 1 300 -12 775 267 53 35 chr1 73616511 73616665 -208576999 - L1ME2 LINE L1 -4565 1831 1668 807 241 126 64 chr1 73616690 73616936 -208576728 - L1ME2 LINE L1 -4816 1580 1351 2509 72 0 3 chr1 73616936 73617242 -208576422 - AluY SINE Alu -6 305 1 807 241 126 64 chr1 73617242 73617822 -208575842 - L1ME2 LINE L1 -5045 1351 703 2166 135 0 0 chr1 73617832 73618129 -208575535 - AluSx SINE Alu -12 300 4 289 158 24 98 chr1 73618491 73618573 -208575091 - MLT1I LTR MaLR -3 406 331 704 59 10 0 chr1 73618868 73618970 -208574694 + (TCTCCC)n Simple_repeat Simple_repeat 3 105 0 5662 90 21 29 chr1 73618970 73620239 -208573425 + SVA Other Other 53 868 -520 4702 80 18 52 chr1 73620256 73621044 -208572620 + SVA Other Other 433 1193 -193 2810 10 0 0 chr1 73621044 73621347 -208572317 + AluY SINE Alu 1 303 -8 1884 19 0 0 chr1 73621345 73621581 -208572083 + SVA Other Other 1182 1417 0 * 602 206 0 0 chr1 73621592 73621728 -208571936 + L1PA4 LINE L1 5998 6133 -22 198 0 0 0 chr1 73621741 73621763 -208571901 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 429 20 0 0 chr1 73621932 73621982 -208571682 + (A)n Simple_repeat Simple_repeat 1 50 0 1273 42 0 36 chr1 73621991 73622199 -208571465 + L1PA4 LINE L1 5997 6155 0 351 253 60 0 chr1 73623355 73623438 -208570226 + L2 LINE L2 3225 3312 -1 26 0 0 0 chr1 73624135 73624161 -208569503 + AT_rich Low_complexity Low_complexity 1 26 0 516 189 74 27 chr1 73624269 73624417 -208569247 - HAL1 LINE L1 -94 2413 2259 417 255 26 39 chr1 73624586 73624739 -208568925 - HAL1 LINE L1 -509 1998 1848 434 263 25 8 chr1 73624776 73624894 -208568770 - HAL1 LINE L1 -1797 710 591 604 200 73 57 chr1 73624918 73625158 -208568506 - MER34 LTR ERV1 0 542 319 534 159 0 114 chr1 73625155 73625287 -208568377 - MER34B LTR ERV1 -439 126 10 * 991 285 62 27 chr1 73625375 73625813 -208567851 - HAL1 LINE L1 -2046 461 9 193 237 226 32 chr1 73625833 73625926 -208567738 - MIR SINE MIR -68 140 30 499 304 66 16 chr1 73625962 73626205 -208567459 - MIR SINE MIR 0 262 8 3179 237 63 85 chr1 73626534 73627781 -208565883 - MLT1A2-int LTR MaLR -13 1358 6 1859 182 10 77 chr1 73627785 73628186 -208565478 - MLT1A2 LTR MaLR 0 374 1 1744 218 52 19 chr1 73628308 73628471 -208565193 + MER49 LTR ERV1 1 157 -765 1548 195 3 23 chr1 73628471 73628800 -208564864 - AluSx SINE Alu 0 312 1 1744 218 52 19 chr1 73628800 73629240 -208564424 + MER49 LTR ERV1 157 898 -24 283 292 59 3 chr1 73629642 73629784 -208563880 + L1MEd LINE L1 1072 1244 -1246 439 225 140 19 chr1 73629810 73629993 -208563671 - MIR SINE MIR -32 230 25 824 156 14 7 chr1 73630474 73630615 -208563049 - MSTC LTR MaLR -1 427 286 1743 145 49 30 chr1 73630618 73630922 -208562742 + AluJb SINE Alu 1 310 -2 310 294 63 14 chr1 73632059 73632202 -208561462 - L1ME LINE L1 -346 5775 5626 2128 108 0 14 chr1 73632722 73633033 -208560631 - AluSq SINE Alu 0 307 1 233 247 28 0 chr1 73633358 73633415 -208560249 - Alu SINE Alu -127 176 138 25 51 0 0 chr1 73633734 73633773 -208559891 + AT_rich Low_complexity Low_complexity 1 39 0 308 269 117 41 chr1 73633784 73633955 -208559709 - HAL1b LINE L1 -437 911 728 548 283 32 69 chr1 73634567 73634814 -208558850 + MLT1J LTR MaLR 272 509 -2 346 283 63 47 chr1 73635034 73635225 -208558439 - MLT1J1 LTR MaLR -190 256 63 1346 115 0 0 chr1 73635360 73635543 -208558121 - AluSg/x SINE Alu -3 307 125 2256 103 3 3 chr1 73635547 73635849 -208557815 - AluSq SINE Alu -11 302 1 2911 7 0 0 chr1 73636332 73636642 -208557022 - AluYb8 SINE Alu -8 310 1 430 351 67 4 chr1 73637018 73637243 -208556421 - HERVL LTR ERVL -3425 2339 2101 346 310 62 8 chr1 73637280 73637485 -208556179 - HERVL LTR ERVL -3179 1817 1703 341 284 138 48 chr1 73637704 73638038 -208555626 - MLT1K LTR MaLR -2 586 223 629 206 103 29 chr1 73638057 73638232 -208555432 + MIR SINE MIR 36 223 -39 2268 185 28 19 chr1 73639056 73639482 -208554182 + MSTB1 LTR MaLR 1 430 -2 251 174 0 0 chr1 73639491 73639537 -208554127 - L2 LINE L2 -2 3311 3266 1431 131 18 4 chr1 73639977 73640206 -208553458 + L1PA11 LINE L1 5943 6174 0 21 0 0 0 chr1 73640780 73640801 -208552863 + AT_rich Low_complexity Low_complexity 1 21 0 1854 167 20 85 chr1 73641718 73642108 -208551556 - MLT1A1 LTR MaLR 0 365 1 482 212 120 56 chr1 73642351 73642581 -208551083 + MLT1J2 LTR MaLR 192 389 -20 332 289 234 5 chr1 73642844 73643041 -208550623 + MIR SINE MIR 20 261 -1 214 304 13 0 chr1 73643074 73643153 -208550511 + CT-rich Low_complexity Low_complexity 1 80 0 * 219 241 0 37 chr1 73643102 73643156 -208550508 + C-rich Low_complexity Low_complexity 4 55 0 2305 77 30 0 chr1 73643304 73643603 -208550061 + AluY SINE Alu 1 308 -3 2013 128 0 0 chr1 73644078 73644352 -208549312 - AluSx SINE Alu -38 274 1 285 394 32 30 chr1 73644354 73644692 -208548972 + L2 LINE L2 2196 2534 -780 429 281 25 50 chr1 73645038 73645159 -208548505 + MIR SINE MIR 46 163 -99 1105 250 124 37 chr1 73645159 73645626 -208548038 + MLT1H LTR MaLR 1 549 0 225 333 0 14 chr1 73645627 73645699 -208547965 + MIR SINE MIR 160 230 -32 239 363 32 32 chr1 73645741 73645931 -208547733 + L2 LINE L2 2864 3053 -219 24 0 0 0 chr1 73646023 73646047 -208547617 + AT_rich Low_complexity Low_complexity 1 24 0 194 150 0 50 chr1 73646336 73646376 -208547288 + L2 LINE L2 3272 3309 -4 197 313 88 53 chr1 73646408 73646497 -208547167 - L2 LINE L2 -189 3083 2999 1643 182 0 64 chr1 73646497 73646632 -208547032 + AluJo SINE Alu 1 143 -169 2339 65 3 10 chr1 73646632 73646925 -208546739 - AluY SINE Alu -20 291 1 1643 182 0 64 chr1 73646925 73647118 -208546546 + AluJo SINE Alu 143 308 -4 197 313 88 53 chr1 73647118 73647345 -208546319 - L2 LINE L2 -273 2999 2738 326 303 42 7 chr1 73647367 73647509 -208546155 - L1ME4a LINE L1 -12 6109 5963 1285 203 54 4 chr1 73647511 73647787 -208545877 - L1MC4 LINE L1 0 8042 7753 255 59 0 0 chr1 73647808 73647842 -208545822 + Alu SINE Alu 262 295 -7 * 262 75 0 0 chr1 73647837 73647877 -208545787 - Tigger7 DNA MER2_type -619 114 75 1826 159 3 20 chr1 73647877 73648178 -208545486 - AluJo SINE Alu -14 298 3 1871 171 0 22 chr1 73648204 73648520 -208545144 + AluJb SINE Alu 2 310 -2 445 292 62 0 chr1 73648633 73648794 -208544870 - L1MC4 LINE L1 -1415 6627 6457 2360 113 0 0 chr1 73648971 73649282 -208544382 + AluY SINE Alu 1 311 0 777 260 36 18 chr1 73649345 73649564 -208544100 - MIR SINE MIR -37 225 3 486 262 101 13 chr1 73649609 73649758 -208543906 + MIR SINE MIR 3 164 -98 225 244 13 26 chr1 73649760 73649838 -208543826 - LTR33A LTR ERVL -3 520 444 595 76 13 0 chr1 73650274 73650353 -208543311 - MADE1 DNA Mariner 0 80 1 192 268 195 0 chr1 73650423 73650505 -208543159 + MIR SINE MIR 163 260 -2 2586 23 33 3 chr1 73651086 73651388 -208542276 - AluY SINE Alu 0 311 1 1051 253 10 44 chr1 73653973 73654230 -208539434 + L1ME3 LINE L1 5850 6097 -65 1364 156 134 52 chr1 73654230 73654499 -208539165 + AluJo SINE Alu 1 291 -21 1051 253 10 44 chr1 73654499 73654534 -208539130 + L1ME3 LINE L1 6097 6132 -30 549 312 51 24 chr1 73654568 73654821 -208538843 + MIR SINE MIR 1 260 -2 842 194 48 36 chr1 73654823 73654988 -208538676 + FAM SINE Alu 1 167 -8 341 258 57 8 chr1 73655215 73655339 -208538325 - MER117 DNA MER1_type -60 137 8 1019 251 162 34 chr1 73655877 73656347 -208537317 - L2 LINE L2 -965 2349 1820 2321 84 7 10 chr1 73656953 73657252 -208536412 - AluSx SINE Alu -14 298 1 2161 131 3 3 chr1 73658293 73658606 -208535058 + AluSq SINE Alu 1 313 0 253 296 6 35 chr1 73659408 73659580 -208534084 + (TA)n Simple_repeat Simple_repeat 1 167 0 450 364 105 9 chr1 73659641 73659792 -208533872 + L2 LINE L2 2918 3053 -219 2333 102 0 3 chr1 73659792 73660097 -208533567 - AluSg SINE Alu -2 308 5 450 364 105 9 chr1 73660097 73660269 -208533395 + L2 LINE L2 3053 3272 0 716 275 53 14 chr1 73660752 73661116 -208532548 - LTR33A LTR ERVL -8 515 122 1033 296 75 47 chr1 73661241 73661528 -208532136 - MLT1J LTR MaLR -4 507 199 490 251 100 42 chr1 73661528 73661713 -208531951 - MER112 DNA MER1_type -3 253 49 2413 95 0 0 chr1 73661713 73662017 -208531647 - AluSg SINE Alu -6 304 1 490 251 100 42 chr1 73662017 73662070 -208531594 - MER112 DNA MER1_type -207 49 1 1033 296 75 47 chr1 73662070 73662275 -208531389 - MLT1J LTR MaLR -312 199 1 303 263 62 0 chr1 73662426 73662506 -208531158 + MIR SINE MIR 108 192 -70 216 154 58 58 chr1 73662847 73662899 -208530765 + L2 LINE L2 3262 3313 0 296 96 39 0 chr1 73663529 73663581 -208530083 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 1125 160 11 5 chr1 73664177 73664365 -208529299 - L1PA16 LINE L1 -9 6157 5969 2010 130 25 3 chr1 73664503 73664788 -208528876 + AluSg SINE Alu 1 291 -19 1920 109 64 0 chr1 73665349 73665640 -208528024 + AluSx SINE Alu 1 308 0 622 302 26 13 chr1 73665884 73666130 -208527534 + MIR SINE MIR 14 262 0 4382 32 0 0 chr1 73666191 73666696 -208526968 + L1PA3 LINE L1 5648 6152 -3 31 0 0 0 chr1 73666696 73666727 -208526937 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chr1 73666918 73666940 -208526724 + (CA)n Simple_repeat Simple_repeat 1 22 0 193 233 0 0 chr1 73666953 73666996 -208526668 + MIR SINE MIR 220 262 0 256 264 14 0 chr1 73667036 73667108 -208526556 + L2 LINE L2 2924 2996 -317 21 36 0 0 chr1 73667110 73667138 -208526526 + AT_rich Low_complexity Low_complexity 1 28 0 1755 176 3 3 chr1 73667161 73667466 -208526198 - AluJo SINE Alu 0 305 1 1936 253 47 10 chr1 73667590 73668080 -208525584 + LTR40a LTR ERVL 10 517 -2 226 203 68 0 chr1 73668088 73668147 -208525517 - L2 LINE L2 -327 2986 2924 358 250 0 0 chr1 73668221 73668297 -208525367 + L2 LINE L2 3188 3263 -9 441 250 18 9 chr1 73668433 73668545 -208525119 + MIR SINE MIR 30 142 -66 1980 127 22 0 chr1 73668623 73668926 -208524738 + AluSx SINE Alu 3 311 0 895 178 0 61 chr1 73669133 73669330 -208524334 + AluJb SINE Alu 127 311 -1 2317 113 7 0 chr1 73669470 73669779 -208523885 - AluSx SINE Alu -1 311 1 273 247 123 0 chr1 73670162 73670243 -208523421 - L2 LINE L2 -9 3304 3214 276 258 194 0 chr1 73670807 73670931 -208522733 - MIR SINE MIR -13 249 102 234 189 87 87 chr1 73670943 73671070 -208522594 - L1MD2 LINE L1 -138 6221 6095 278 265 0 20 chr1 73671071 73671173 -208522491 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 290 271 47 0 chr1 73671175 73671260 -208522404 + L1MC4 LINE L1 6614 6702 -1340 271 250 71 0 chr1 73671233 73671317 -208522347 - L1MC4 LINE L1 -1339 6703 6614 * 227 214 0 14 chr1 73671300 73671370 -208522294 - L1MCa LINE L1 -4362 2064 1996 * 310 231 0 22 chr1 73671352 73671443 -208522221 - L1MC4 LINE L1 -1340 6702 6614 374 294 14 0 chr1 73671444 73671587 -208522077 + (TA)n Simple_repeat Simple_repeat 1 145 0 229 93 70 0 chr1 73671596 73671639 -208522025 + L1MCa LINE L1 2008 2053 -4373 302 366 22 0 chr1 73672022 73672156 -208521508 + MIR SINE MIR 12 148 -114 378 264 69 42 chr1 73672299 73672443 -208521221 - MER5A DNA MER1_type -38 151 4 260 366 84 6 chr1 73672673 73672993 -208520671 - L2 LINE L2 -441 2873 2529 1189 84 0 0 chr1 73673731 73673873 -208519791 + AluSq/x SINE Alu 1 142 -170 500 312 46 9 chr1 73674363 73674581 -208519083 + MIR SINE MIR 9 234 -28 23 54 0 0 chr1 73675291 73675328 -208518336 + GC_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 73675660 73675683 -208517981 + GC_rich Low_complexity Low_complexity 1 23 0 345 184 0 31 chr1 73677090 73677188 -208516476 + CT-rich Low_complexity Low_complexity 3 97 0 22 35 0 0 chr1 73678955 73678984 -208514680 + AT_rich Low_complexity Low_complexity 1 29 0 193 282 82 24 chr1 73679210 73679295 -208514369 + MIR3 SINE MIR 4 93 -115 * 199 224 66 26 chr1 73679293 73679369 -208514295 + MIR SINE MIR 129 207 -55 1748 157 48 14 chr1 73680052 73680346 -208513318 - AluJo SINE Alu -8 304 1 2103 84 0 7 chr1 73680419 73680694 -208512970 - AluY SINE Alu -4 307 35 270 0 0 0 chr1 73680985 73681015 -208512649 + (CAG)n Simple_repeat Simple_repeat 2 31 0 733 173 10 81 chr1 73682308 73682465 -208511199 - L1MC5 LINE L1 -30 7931 7788 2737 24 0 0 chr1 73682465 73682814 -208510850 - AluYb8 SINE Alu 0 349 1 733 173 10 81 chr1 73682814 73682852 -208510812 - L1MC5 LINE L1 -173 7788 7749 357 205 48 48 chr1 73682852 73683018 -208510646 + Charlie7 DNA MER1_type 2422 2587 -25 679 215 73 123 chr1 73683609 73683949 -208509715 - MER102b DNA MER1_type -18 323 1 237 354 107 0 chr1 73683949 73684127 -208509537 + L3 LINE CR1 1285 1481 -96 331 319 176 5 chr1 73684483 73684699 -208508965 - MLT1K LTR MaLR -2 586 334 277 256 98 62 chr1 73685052 73685245 -208508419 - MIR3 SINE MIR -19 189 1 28 0 0 0 chr1 73685543 73685571 -208508093 + AT_rich Low_complexity Low_complexity 1 28 0 358 367 27 0 chr1 73688214 73688361 -208505303 - L2 LINE L2 -1 3271 3121 851 141 0 15 chr1 73688442 73688577 -208505087 + FLAM_C SINE Alu 1 133 0 726 270 119 4 chr1 73688586 73688838 -208504826 + L2 LINE L2 2685 2965 -349 236 274 82 0 chr1 73688959 73689032 -208504632 + L2 LINE L2 3226 3304 -9 4212 130 30 16 chr1 73689398 73690066 -208503598 - L1MB3 LINE L1 -57 6126 5450 1712 203 43 11 chr1 73690086 73690460 -208503204 - L1ME1 LINE L1 -56 6110 5725 1436 147 0 0 chr1 73690460 73690677 -208502987 - AluJb SINE Alu 0 301 85 1715 219 52 16 chr1 73690678 73691130 -208502534 - L1ME1 LINE L1 -438 5728 5265 295 242 66 0 chr1 73691099 73691190 -208502474 - L1MB7 LINE L1 -54 6130 6034 * 591 53 0 0 chr1 73691231 73691306 -208502358 + (CA)n Simple_repeat Simple_repeat 1 75 0 21 0 0 0 chr1 73691403 73691424 -208502240 + AT_rich Low_complexity Low_complexity 1 21 0 406 327 112 27 chr1 73691601 73692100 -208501564 - L2 LINE L2 -23 3249 2683 294 322 78 0 chr1 73693717 73693832 -208499832 - L2 LINE L2 -6 3266 3143 196 283 151 28 chr1 73694467 73694573 -208499091 + MIR SINE MIR 107 225 -37 185 302 0 0 chr1 73694779 73694822 -208498842 - MIR SINE MIR -13 249 207 302 291 47 16 chr1 73695580 73695707 -208497957 + MIR SINE MIR 94 224 -38 1883 136 45 48 chr1 73696172 73696548 -208497116 - THE1C LTR MaLR 0 375 1 1457 158 8 26 chr1 73696566 73696800 -208496864 - AluJb SINE Alu -81 231 2 208 135 0 0 chr1 73696802 73696839 -208496825 + (T)n Simple_repeat Simple_repeat 1 37 0 221 321 83 9 chr1 73697784 73697893 -208495771 + L2 LINE L2 3156 3272 0 186 178 89 0 chr1 73701307 73701352 -208492312 + MIR SINE MIR 90 138 -124 249 108 0 0 chr1 73701744 73701781 -208491883 + (A)n Simple_repeat Simple_repeat 1 37 0 2305 104 0 3 chr1 73702725 73703022 -208490642 + AluSx SINE Alu 2 297 -15 1156 231 157 18 chr1 73704396 73704842 -208488822 + Charlie4a DNA MER1_type 1 508 0 363 279 23 16 chr1 73704992 73705121 -208488543 - MLT1I LTR MaLR -201 208 79 677 135 0 178 chr1 73705452 73705615 -208488049 + FLAM_C SINE Alu 2 135 -8 288 0 0 0 chr1 73705615 73705647 -208488017 + (GA)n Simple_repeat Simple_repeat 2 33 0 2242 105 3 3 chr1 73705648 73705942 -208487722 + AluSx SINE Alu 3 296 -16 25 0 0 0 chr1 73705999 73706024 -208487640 + AT_rich Low_complexity Low_complexity 1 25 0 255 189 0 0 chr1 73707407 73707460 -208486204 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 0 0 0 chr1 73708275 73708296 -208485368 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1925 162 0 3 chr1 73708914 73709210 -208484454 - AluJb SINE Alu -17 295 1 207 0 0 0 chr1 73710260 73710283 -208483381 + (GGGGA)n Simple_repeat Simple_repeat 3 25 0 28 0 0 0 chr1 73710406 73710434 -208483230 + GC_rich Low_complexity Low_complexity 1 28 0 279 54 0 0 chr1 73710714 73710751 -208482913 + (CCCCG)n Simple_repeat Simple_repeat 1 37 0 264 231 141 0 chr1 73711190 73711268 -208482396 - MIR SINE MIR -6 256 168 574 249 88 16 chr1 73711279 73711472 -208482192 - MIR SINE MIR -16 246 40 252 262 196 28 chr1 73712639 73712746 -208480918 + MIR SINE MIR 16 140 -68 2229 120 117 28 chr1 73712783 73713176 -208480488 - MSTA LTR MaLR 0 428 1 362 232 37 0 chr1 73713345 73713427 -208480237 + MIR SINE MIR 82 166 -96 199 323 32 11 chr1 73714971 73715064 -208478600 + MIR SINE MIR 28 122 -140 183 311 68 91 chr1 73716113 73716245 -208477419 - MIR SINE MIR -60 148 20 481 308 77 15 chr1 73716379 73716574 -208477090 - L3 LINE CR1 -3 1574 1368 321 284 176 39 chr1 73716643 73716847 -208476817 + MIR SINE MIR 6 237 -25 231 210 50 60 chr1 73716856 73716956 -208476708 - MIR SINE MIR -49 213 115 2267 123 0 0 chr1 73716986 73717294 -208476370 + AluSx SINE Alu 1 308 -4 237 317 77 19 chr1 73717886 73717990 -208475674 + MIR SINE MIR 30 139 -123 819 195 144 20 chr1 73718031 73718226 -208475438 - MER20 DNA MER1_type 0 219 1 718 300 64 24 chr1 73718561 73718858 -208474806 - MER102b DNA MER1_type -32 309 1 285 233 182 50 chr1 73719599 73719758 -208473906 - L3 LINE CR1 -1088 489 310 257 271 0 0 chr1 73721324 73721372 -208472292 + L2 LINE L2 3210 3257 -15 258 268 37 24 chr1 73721432 73721514 -208472150 - MIR SINE MIR -31 231 149 602 252 114 19 chr1 73721796 73722006 -208471658 + MIR SINE MIR 33 262 0 254 135 0 0 chr1 73722047 73722084 -208471580 - U2 snRNA snRNA -151 37 1 649 242 51 125 chr1 73722087 73722496 -208471168 - L2 LINE L2 -14 3299 2921 956 81 0 0 chr1 73723165 73723289 -208470375 - L1PA8 LINE L1 -5 6167 6044 225 232 50 71 chr1 73723457 73723556 -208470108 + MIR SINE MIR 27 123 -85 229 297 16 16 chr1 73724276 73724340 -208469324 + MIR SINE MIR 89 152 -56 290 299 131 7 chr1 73725633 73725770 -208467894 - MIR SINE MIR -1 261 108 1214 227 70 14 chr1 73725834 73726297 -208467367 - MLT1E3 LTR MaLR -2 622 126 1357 193 24 0 chr1 73726334 73726630 -208467034 - L1MB7 LINE L1 -272 5912 5610 2208 185 64 4 chr1 73726633 73727146 -208466518 - L1MB7 LINE L1 -771 5375 4832 2080 95 21 14 chr1 73727183 73727468 -208466196 - AluSx SINE Alu -12 300 14 466 167 39 0 chr1 73727495 73727597 -208466067 + L1MD3 LINE L1 7875 7980 -15 831 203 71 32 chr1 73727944 73728225 -208465439 + L1MC5 LINE L1 7612 7903 -58 23 0 0 0 chr1 73729141 73729164 -208464500 + AT_rich Low_complexity Low_complexity 1 23 0 214 296 0 14 chr1 73729336 73729407 -208464257 + MIR SINE MIR 81 150 -112 201 39 0 0 chr1 73729655 73729681 -208463983 + (ATG)n Simple_repeat Simple_repeat 2 27 0 495 261 65 38 chr1 73729690 73729874 -208463790 - MIR SINE MIR -22 240 52 21 0 0 0 chr1 73730002 73730023 -208463641 + AT_rich Low_complexity Low_complexity 1 21 0 244 307 27 0 chr1 73730278 73730353 -208463311 + MIR3 SINE MIR 125 201 -7 21 36 0 0 chr1 73733373 73733401 -208460263 + AT_rich Low_complexity Low_complexity 1 28 0 474 283 192 18 chr1 73734424 73734643 -208459021 - MIR SINE MIR 0 262 6 2520 73 0 0 chr1 73735464 73735766 -208457898 + AluSx SINE Alu 2 303 -9 183 42 0 0 chr1 73735798 73735822 -208457842 + (T)n Simple_repeat Simple_repeat 1 24 0 336 24 0 0 chr1 73736370 73736411 -208457253 + (TG)n Simple_repeat Simple_repeat 2 42 0 302 260 67 19 chr1 73737152 73737256 -208456408 - L2 LINE L2 -19 3294 3186 328 314 81 52 chr1 73737324 73737634 -208456030 - L2 LINE L2 -280 3033 2708 237 159 0 0 chr1 73737752 73737796 -208455868 + (TAG)n Simple_repeat Simple_repeat 2 45 0 1925 167 0 0 chr1 73737948 73738235 -208455429 + AluSx SINE Alu 1 287 -25 2221 100 0 7 chr1 73738614 73738914 -208454750 - AluY SINE Alu 0 311 14 2311 110 0 0 chr1 73738919 73739218 -208454446 - AluSx SINE Alu -13 299 1 283 314 86 14 chr1 73739461 73739601 -208454063 + L2 LINE L2 3102 3251 -21 292 252 53 73 chr1 73739761 73739912 -208453752 + MIR SINE MIR 35 182 -80 2217 121 3 0 chr1 73740202 73740499 -208453165 - AluSq SINE Alu -15 298 1 277 254 46 54 chr1 73740659 73740789 -208452875 + MER5A DNA MER1_type 59 187 -2 591 189 37 30 chr1 73740913 73741077 -208452587 - L1MB7 LINE L1 -17 6167 6003 246 322 62 34 chr1 73741086 73741232 -208452432 - MIR SINE MIR -110 152 3 187 252 224 9 chr1 73741460 73741567 -208452097 + MIR3 SINE MIR 31 160 -48 181 271 42 0 chr1 73741804 73741852 -208451812 - MIR SINE MIR -131 131 82 486 210 191 13 chr1 73742616 73742773 -208450891 - MIR SINE MIR -13 249 65 24 32 0 0 chr1 73743229 73743260 -208450404 + AT_rich Low_complexity Low_complexity 1 31 0 278 293 52 35 chr1 73743395 73743511 -208450153 - MIR3 SINE MIR -36 172 55 181 227 0 23 chr1 73744206 73744250 -208449414 - L2 LINE L2 0 3313 3271 466 258 25 0 chr1 73744514 73744634 -208449030 + L2 LINE L2 3191 3313 0 183 42 0 0 chr1 73745849 73745873 -208447791 + (TG)n Simple_repeat Simple_repeat 1 24 0 226 197 142 63 chr1 73746181 73746308 -208447356 + L1ME4a LINE L1 5960 6096 -25 1423 187 43 12 chr1 73746400 73746520 -208447144 + AluJo SINE Alu 1 116 -196 211 28 56 0 chr1 73746520 73746556 -208447108 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1423 187 43 12 chr1 73746556 73746692 -208446972 + AluJo SINE Alu 116 265 -47 322 173 160 0 chr1 73747003 73747078 -208446586 + MIR SINE MIR 175 261 -1 24 32 0 0 chr1 73747497 73747528 -208446136 + AT_rich Low_complexity Low_complexity 1 31 0 417 312 108 11 chr1 73747610 73747796 -208445868 + MIR SINE MIR 9 212 -50 252 100 0 0 chr1 73747850 73747890 -208445774 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 73747897 73747919 -208445745 + AT_rich Low_complexity Low_complexity 1 22 0 1593 176 40 7 chr1 73748148 73748273 -208445391 + AluJo SINE Alu 1 120 -192 231 36 0 0 chr1 73748273 73748301 -208445363 + (TA)n Simple_repeat Simple_repeat 2 29 0 1593 176 40 7 chr1 73748301 73748453 -208445211 + AluJo SINE Alu 120 287 -25 207 0 0 0 chr1 73748741 73748764 -208444900 + (T)n Simple_repeat Simple_repeat 1 23 0 418 149 0 0 chr1 73748792 73748859 -208444805 - AluS SINE Alu -245 67 1 2167 212 58 17 chr1 73750099 73750683 -208442981 - L1ME3A LINE L1 -10 6143 5536 24 77 0 0 chr1 73750859 73750911 -208442753 + AT_rich Low_complexity Low_complexity 1 52 0 1703 191 7 3 chr1 73751197 73751506 -208442158 - AluJb SINE Alu 0 312 3 222 231 22 88 chr1 73751990 73752081 -208441583 + MIR SINE MIR 122 206 -56 2178 131 0 3 chr1 73752228 73752541 -208441123 - AluSq SINE Alu -1 312 1 724 199 32 93 chr1 73753498 73753744 -208439920 - MER46C DNA MER2_type -107 231 1 387 282 103 0 chr1 73753825 73753942 -208439722 + MIR SINE MIR 11 139 -123 563 231 60 8 chr1 73754023 73754157 -208439507 + MIR SINE MIR 114 254 -8 22 0 0 0 chr1 73754664 73754686 -208438978 + AT_rich Low_complexity Low_complexity 1 22 0 426 287 83 48 chr1 73755837 73756067 -208437597 + MIR SINE MIR 19 256 -6 188 159 0 23 chr1 73756074 73756118 -208437546 + T-rich Low_complexity Low_complexity 1 43 0 244 351 121 11 chr1 73757125 73757299 -208436365 - MIR SINE MIR -17 245 53 1860 165 0 28 chr1 73757332 73757653 -208436011 - AluJo SINE Alu 0 312 1 237 332 112 51 chr1 73757732 73758045 -208435619 - L3 LINE CR1 -110 1467 1136 205 238 0 48 chr1 73758326 73758389 -208435275 - MIR SINE MIR -71 191 132 22 0 0 0 chr1 73758479 73758501 -208435163 + AT_rich Low_complexity Low_complexity 1 22 0 364 292 74 5 chr1 73758697 73758899 -208434765 - L1ME3A LINE L1 -224 5946 5731 1155 131 11 11 chr1 73758900 73759076 -208434588 - FRAM SINE Alu -8 168 1 271 279 86 49 chr1 73759373 73759617 -208434047 - L1ME3A LINE L1 -650 5497 5242 524 205 211 6 chr1 73759617 73759783 -208433881 + MER3 DNA MER1_type 1 200 -9 1720 189 3 3 chr1 73759852 73760164 -208433500 - AluJb SINE Alu 0 312 1 428 240 77 107 chr1 73760231 73760287 -208433377 - L1ME3A LINE L1 -1078 5051 4995 2086 133 0 3 chr1 73760287 73760595 -208433069 - AluSx SINE Alu -5 307 1 428 240 77 107 chr1 73760595 73760906 -208432758 - L1ME3A LINE L1 -1134 4995 4697 2096 47 0 12 chr1 73761758 73762011 -208431653 + AluY SINE Alu 48 297 -14 23 0 0 0 chr1 73762240 73762263 -208431401 + AT_rich Low_complexity Low_complexity 1 23 0 999 279 114 25 chr1 73762400 73762634 -208431030 + L2 LINE L2 1573 1785 -1529 2098 118 6 25 chr1 73762634 73762663 -208431001 - AluSg SINE Alu 0 310 282 217 0 0 0 chr1 73762663 73762687 -208430977 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2098 118 6 25 chr1 73762687 73762971 -208430693 - AluSg SINE Alu -28 282 1 999 279 114 25 chr1 73762971 73763173 -208430491 + L2 LINE L2 1785 2048 -1266 269 311 71 44 chr1 73763149 73763374 -208430290 + L2 LINE L2 2915 3145 -168 * 6460 77 16 8 chr1 73763407 73764536 -208429128 + L1PA14 LINE L1 5027 6161 0 436 204 63 155 chr1 73764553 73764901 -208428763 - L1ME3A LINE L1 -2509 3620 3305 358 156 13 47 chr1 73764909 73765020 -208428644 + L1ME3A LINE L1 3149 3259 -2870 2059 221 127 25 chr1 73765043 73766002 -208427662 - L1ME3A LINE L1 -2928 3201 2145 1117 264 68 66 chr1 73766096 73766453 -208427211 - L1MEd LINE L1 -4382 1928 1573 1632 152 34 50 chr1 73766453 73766750 -208426914 + AluJo SINE Alu 9 300 -12 1117 264 68 66 chr1 73766750 73767165 -208426499 - L1MEd LINE L1 -4737 1573 1117 4120 211 27 4 chr1 73767294 73768284 -208425380 - L1 LINE L1 -1315 4831 3819 1062 106 6 82 chr1 73768384 73768554 -208425110 - AluSc SINE Alu -152 157 1 933 225 136 35 chr1 73768554 73768959 -208424705 - L1MEd LINE L1 -5215 904 459 253 213 253 0 chr1 73769838 73769913 -208423751 + MER34 LTR ERV1 3 96 -446 818 196 109 62 chr1 73769915 73770236 -208423428 + LTR48 LTR ERV1 150 485 -302 276 187 102 44 chr1 73770275 73770444 -208423220 + LTR48 LTR ERV1 378 542 0 182 188 0 0 chr1 73771134 73771166 -208422498 + L2 LINE L2 3241 3272 0 357 280 40 40 chr1 73771543 73771718 -208421946 - MIR SINE MIR -41 221 47 732 278 43 43 chr1 73771839 73772163 -208421501 + L2 LINE L2 2990 3313 0 217 336 112 9 chr1 73772188 73772295 -208421369 - MIR SINE MIR -123 139 22 21 36 0 0 chr1 73772733 73772761 -208420903 + AT_rich Low_complexity Low_complexity 1 28 0 557 337 48 11 chr1 73773320 73773507 -208420157 - MIR SINE MIR -54 208 15 225 0 0 0 chr1 73773994 73774019 -208419645 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2238 92 3 0 chr1 73774740 73775055 -208418609 - AluSp SINE Alu 0 316 1 236 172 0 35 chr1 73775079 73775137 -208418527 + A-rich Low_complexity Low_complexity 1 56 0 225 180 0 49 chr1 73777592 73777653 -208416011 - L2 LINE L2 -1 3271 3214 1457 167 22 85 chr1 73778923 73779288 -208414376 + MLT1A2 LTR MaLR 4 345 -29 330 271 157 18 chr1 73779597 73779763 -208413901 + MIR SINE MIR 74 262 0 193 247 49 49 chr1 73779866 73779947 -208413717 - L2 LINE L2 -211 3061 2981 293 291 104 55 chr1 73779990 73780187 -208413477 + MIR SINE MIR 16 216 -46 524 328 61 9 chr1 73780489 73780719 -208412945 - MIR SINE MIR -7 255 16 386 246 93 8 chr1 73780994 73781112 -208412552 - MIR SINE MIR -71 191 64 205 205 0 0 chr1 73782481 73782520 -208411144 + MIR SINE MIR 109 147 -115 1584 162 0 8 chr1 73782821 73783080 -208410584 - AluJo SINE Alu -55 257 1 23 78 0 0 chr1 73783156 73783207 -208410457 + AT_rich Low_complexity Low_complexity 1 51 0 758 288 105 0 chr1 73783321 73783550 -208410114 + MIR SINE MIR 2 254 -8 218 268 171 0 chr1 73784012 73784094 -208409570 + MIR SINE MIR 13 108 -154 1645 195 164 29 chr1 73784308 73784826 -208408838 - MLT1G LTR MaLR -2 588 1 744 237 138 0 chr1 73784904 73785128 -208408536 - MER58 DNA MER1_type -55 2365 32 312 243 27 0 chr1 73785588 73785662 -208408002 - L2 LINE L2 -9 3304 3229 596 182 0 0 chr1 73786191 73786301 -208407363 + L1PA15 LINE L1 6056 6165 0 761 157 92 22 chr1 73786502 73786687 -208406977 - MER20 DNA MER1_type 0 219 22 257 274 82 14 chr1 73787447 73787520 -208406144 + MER91C DNA MER1_type 29 106 -34 302 289 53 53 chr1 73788687 73788874 -208404790 + MIR SINE MIR 12 198 -64 290 361 76 7 chr1 73789182 73789326 -208404338 + MIR SINE MIR 32 185 -77 2543 106 14 6 chr1 73789443 73789803 -208403861 - THE1B LTR MaLR -1 363 1 1011 172 5 35 chr1 73789984 73790187 -208403477 + MER20 DNA MER1_type 23 219 0 363 241 9 35 chr1 73790879 73790995 -208402669 + L1ME LINE L1 5701 5813 -308 1988 134 0 0 chr1 73791903 73792187 -208401477 - AluSx SINE Alu -17 295 12 491 164 115 8 chr1 73792363 73792485 -208401179 + MIR SINE MIR 49 183 -79 200 301 48 24 chr1 73792682 73792765 -208400899 + L3 LINE CR1 1492 1576 -1 21 0 0 0 chr1 73793549 73793570 -208400094 + AT_rich Low_complexity Low_complexity 1 21 0 660 282 39 67 chr1 73793661 73793991 -208399673 + MER102b DNA MER1_type 21 341 0 1648 101 171 0 chr1 73794255 73794512 -208399152 - AluSx SINE Alu -1 301 1 1496 209 66 20 chr1 73795268 73795308 -208398356 - MLT2D LTR ERVL 0 414 377 228 67 0 0 chr1 73795308 73795338 -208398326 + (TG)n Simple_repeat Simple_repeat 2 31 0 1496 209 66 20 chr1 73795338 73795690 -208397974 - MLT2D LTR ERVL -37 377 4 2409 56 0 50 chr1 73795860 73796179 -208397485 + AluY SINE Alu 1 303 -8 270 0 0 0 chr1 73796494 73796524 -208397140 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 493 254 57 0 chr1 73796695 73796817 -208396847 + MIR3 SINE MIR 59 187 -21 183 42 0 0 chr1 73796850 73796874 -208396790 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 311 248 120 51 chr1 73797316 73797433 -208396231 + L2 LINE L2 3187 3311 -2 196 299 91 39 chr1 73798145 73798222 -208395442 - L2 LINE L2 -37 3235 3155 181 300 20 0 chr1 73798372 73798422 -208395242 - L2 LINE L2 -323 2990 2940 243 306 91 48 chr1 73798799 73798985 -208394679 - L2 LINE L2 -833 2481 2288 284 269 99 71 chr1 73799724 73799830 -208393834 - MIR3 SINE MIR -27 181 86 2177 103 0 0 chr1 73799830 73800112 -208393552 + AluSq SINE Alu 25 306 -7 284 269 99 71 chr1 73800112 73800201 -208393463 - MIR3 SINE MIR -122 86 1 180 241 0 52 chr1 73800924 73800982 -208392682 + L3 LINE CR1 1507 1561 -16 255 342 110 32 chr1 73801137 73801292 -208392372 - L2 LINE L2 -4 3268 3102 28 29 0 0 chr1 73804007 73804042 -208389622 + AT_rich Low_complexity Low_complexity 1 35 0 388 163 0 38 chr1 73804044 73804124 -208389540 + MLT1A1 LTR MaLR 1 77 -288 181 130 0 37 chr1 73804138 73804192 -208389472 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1464 170 25 5 chr1 73804192 73804456 -208389208 + MLT1A1 LTR MaLR 82 457 0 475 259 18 8 chr1 73805550 73805684 -208387980 + MER5A DNA MER1_type 36 181 -8 329 329 36 96 chr1 73805807 73806087 -208387577 - L2 LINE L2 -25 3247 2985 749 208 98 0 chr1 73806108 73806291 -208387373 - MER3 DNA MER1_type -8 201 1 710 188 71 0 chr1 73806326 73806480 -208387184 + MER58A DNA MER1_type 43 207 -17 267 236 97 0 chr1 73806639 73806711 -208386953 + L3 LINE CR1 1113 1191 -386 181 167 50 117 chr1 73807282 73807342 -208386322 - L2 LINE L2 -2 3311 3256 302 335 140 15 chr1 73807421 73807621 -208386043 - MIR SINE MIR -32 230 6 2550 59 7 0 chr1 73808330 73808634 -208385030 - AluY SINE Alu -5 306 1 200 280 0 40 chr1 73809113 73809188 -208384476 - MIR3 SINE MIR -23 185 114 2191 114 0 0 chr1 73809886 73810176 -208383488 - AluSg SINE Alu -15 295 6 2267 118 7 0 chr1 73810185 73810490 -208383174 - AluSx SINE Alu 0 312 6 303 281 0 0 chr1 73811115 73811179 -208382485 - L2 LINE L2 -527 2787 2724 3847 283 88 70 chr1 73811266 73811337 -208382327 - L2 LINE L2 -6 3307 3239 327 49 0 0 chr1 73811337 73811378 -208382286 + (CA)n Simple_repeat Simple_repeat 2 42 0 3847 283 88 70 chr1 73811378 73813218 -208380446 - L2 LINE L2 -74 3239 1340 200 289 0 0 chr1 73814067 73814119 -208379545 + CT-rich Low_complexity Low_complexity 4 55 0 200 225 0 0 chr1 73814784 73814824 -208378840 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 200 167 21 0 chr1 73814990 73815038 -208378626 + (TA)n Simple_repeat Simple_repeat 1 49 0 2983 79 11 19 chr1 73815198 73815576 -208378088 - THE1C LTR MaLR 0 375 1 9384 108 14 105 chr1 73815576 73817312 -208376352 - THE1C-int LTR MaLR 0 1580 3 1663 176 75 31 chr1 73817314 73817673 -208375991 - THE1C LTR MaLR 0 375 1 5137 107 13 0 chr1 73818087 73818800 -208374864 + Tigger1 DNA MER2_type 1214 1935 -483 40 0 0 0 chr1 73818817 73818857 -208374807 + AT_rich Low_complexity Low_complexity 1 40 0 792 176 7 0 chr1 73818857 73818993 -208374671 + Tigger1 DNA MER2_type 2281 2417 -1 183 370 71 29 chr1 73819054 73819362 -208374302 + L2 LINE L2 1945 2265 -1049 184 300 110 66 chr1 73820229 73820456 -208373208 + L2 LINE L2 2530 2766 -548 414 236 49 7 chr1 73820705 73820880 -208372784 - LTR16A LTR ERVL 0 450 236 323 295 0 21 chr1 73820971 73821066 -208372598 + L2 LINE L2 3180 3272 0 215 330 184 0 chr1 73821412 73821521 -208372143 - MIR SINE MIR -62 146 18 245 316 126 17 chr1 73821566 73821740 -208371924 + L2 LINE L2 2291 2483 -831 224 260 149 78 chr1 73822559 73822603 -208371061 + MER5A DNA MER1_type 22 61 -128 240 59 0 0 chr1 73822603 73822637 -208371027 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 224 260 149 78 chr1 73822637 73822746 -208370918 + MER5A DNA MER1_type 61 186 -3 2214 124 0 3 chr1 73823263 73823561 -208370103 + AluSq SINE Alu 1 297 -16 212 135 269 19 chr1 73823562 73823614 -208370050 + MIR SINE MIR 105 169 -93 275 234 104 13 chr1 73823920 73823997 -208369667 + MIR SINE MIR 163 246 -16 209 244 0 0 chr1 73825203 73825248 -208368416 + L2 LINE L2 3255 3299 -14 331 333 40 27 chr1 73825322 73825472 -208368192 + MIR SINE MIR 75 226 -36 1070 229 120 42 chr1 73825906 73826356 -208367308 + Charlie4a DNA MER1_type 17 501 -7 395 288 154 43 chr1 73826924 73827420 -208366244 - L2 LINE L2 -94 3219 2660 242 286 0 14 chr1 73827416 73827486 -208366178 - MIR SINE MIR -115 93 25 * 197 320 90 20 chr1 73828192 73828292 -208365372 + MIR SINE MIR 125 231 -31 464 207 63 0 chr1 73828301 73828412 -208365252 - L1MA10 LINE L1 0 6334 6217 26 0 0 0 chr1 73828553 73828579 -208365085 + AT_rich Low_complexity Low_complexity 1 26 0 2200 122 0 0 chr1 73828586 73828880 -208364784 + AluSx SINE Alu 1 294 -18 295 296 45 45 chr1 73829027 73829159 -208364505 - L2 LINE L2 -65 3207 3076 218 276 58 11 chr1 73829209 73829296 -208364368 - L2 LINE L2 -12 3260 3170 379 276 72 28 chr1 73830078 73830259 -208363405 + MIR SINE MIR 7 195 -67 890 224 51 0 chr1 73830377 73830573 -208363091 + MER58A DNA MER1_type 19 224 0 1816 110 0 60 chr1 73830663 73830815 -208362849 + L1PB4 LINE L1 5893 6022 -134 2311 112 0 0 chr1 73830815 73831118 -208362546 + AluSx SINE Alu 5 307 -5 1816 110 0 60 chr1 73831118 73831246 -208362418 + L1PB4 LINE L1 6022 6156 0 1933 160 0 20 chr1 73832591 73832897 -208360767 + AluJb SINE Alu 1 300 -12 204 268 122 37 chr1 73832945 73833027 -208360637 - L2 LINE L2 -43 3270 3182 182 329 105 0 chr1 73833182 73833258 -208360406 + MIR3 SINE MIR 3 86 -122 316 281 97 56 chr1 73833261 73833457 -208360207 - L2 LINE L2 0 3313 3110 180 289 19 0 chr1 73833477 73833529 -208360135 + MIR SINE MIR 102 154 -108 193 301 32 75 chr1 73833819 73833912 -208359752 + L2 LINE L2 3224 3312 -1 530 298 107 4 chr1 73834088 73834313 -208359351 + MIR SINE MIR 2 249 -13 2160 85 67 0 chr1 73835767 73836050 -208357614 - AluSq SINE Alu -11 302 1 204 354 110 0 chr1 73836355 73836482 -208357182 - L3b LINE CR1 -340 1243 1103 216 97 0 0 chr1 73837723 73837754 -208355910 + (A)n Simple_repeat Simple_repeat 1 31 0 1524 145 136 141 chr1 73838292 73838712 -208354952 - MER47B DNA MER2_type 0 418 1 330 45 0 0 chr1 73839823 73839867 -208353797 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1577 196 14 7 chr1 73839869 73840150 -208353514 - AluJb SINE Alu -28 284 2 2322 98 0 10 chr1 73840179 73840484 -208353180 + AluSg SINE Alu 1 302 -8 595 189 117 84 chr1 73841030 73841313 -208352351 - MLT1E1 LTR MaLR -211 382 103 329 183 33 0 chr1 73841290 73841350 -208352314 - MLT1E1 LTR MaLR -440 153 92 * 837 202 65 69 chr1 73841691 73841938 -208351726 - MER102a DNA MER1_type -1 329 84 190 254 153 0 chr1 73842430 73842489 -208351175 + MIR3 SINE MIR 111 178 -30 210 333 0 0 chr1 73842701 73842758 -208350906 - L2 LINE L2 -5 3308 3252 1444 238 135 11 chr1 73844220 73844732 -208348932 - MLT1F1 LTR MaLR 0 567 1 2030 123 11 3 chr1 73844859 73845143 -208348521 + AluSx SINE Alu 1 286 -26 363 23 0 0 chr1 73845154 73845198 -208348466 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 0 0 0 chr1 73845207 73845232 -208348432 + (TA)n Simple_repeat Simple_repeat 2 26 0 216 321 0 0 chr1 73845302 73845355 -208348309 - L3 LINE CR1 -99 1478 1426 692 257 45 25 chr1 73845575 73845777 -208347887 - MIR SINE MIR -55 207 2 399 228 50 10 chr1 73846875 73846976 -208346688 + MIR SINE MIR 109 213 -49 2293 101 13 3 chr1 73847228 73847534 -208346130 + AluSc SINE Alu 1 309 0 341 330 68 23 chr1 73847630 73847806 -208345858 - MER5A DNA MER1_type 0 189 6 * 504 252 96 69 chr1 73847801 73848019 -208345645 + MIR SINE MIR 21 244 -18 2266 61 0 7 chr1 73848020 73848298 -208345366 + AluY SINE Alu 1 276 -35 242 239 113 28 chr1 73848522 73848593 -208345071 + L2 LINE L2 3147 3223 -49 212 225 0 0 chr1 73848700 73848740 -208344924 + GA-rich Low_complexity Low_complexity 1 40 0 311 320 120 34 chr1 73848740 73848915 -208344749 - L2 LINE L2 -12 3260 3071 1640 152 21 67 chr1 73849261 73849281 -208344383 + L1MA3 LINE L1 5933 5952 -353 2082 136 3 0 chr1 73849281 73849582 -208344082 + AluSx SINE Alu 1 302 -10 1640 152 21 67 chr1 73849582 73849950 -208343714 + L1MA3 LINE L1 5952 6303 -2 894 278 89 31 chr1 73849956 73850457 -208343207 - MLT2E LTR ERVL -54 574 4 2010 118 10 14 chr1 73850913 73851202 -208342462 + AluSx SINE Alu 2 289 -23 283 293 136 3 chr1 73852541 73852723 -208340941 + MIR SINE MIR 3 205 -57 338 295 29 92 chr1 73852917 73853090 -208340574 + MIR SINE MIR 87 248 -14 231 313 0 0 chr1 73853098 73853162 -208340502 + CT-rich Low_complexity Low_complexity 4 67 0 651 177 88 20 chr1 73853390 73853537 -208340127 - FRAM SINE Alu -19 157 1 203 292 212 18 chr1 73853664 73853777 -208339887 - L2 LINE L2 -1 3271 3137 210 314 78 0 chr1 73904169 73904271 -208289393 + L3 LINE CR1 661 770 -807 228 266 229 0 chr1 73904433 73904542 -208289122 + L3 LINE CR1 994 1127 -450 28 0 0 0 chr1 73905123 73905151 -208288513 + AT_rich Low_complexity Low_complexity 1 28 0 428 0 0 19 chr1 73906179 73906232 -208287432 + (TAA)n Simple_repeat Simple_repeat 2 53 0 189 311 67 0 chr1 73906440 73906485 -208287179 - L2 LINE L2 -14 3258 3211 1036 171 0 69 chr1 73906672 73906889 -208286775 - AluJb SINE Alu -24 288 87 429 241 35 43 chr1 73906894 73907010 -208286654 - MIR SINE MIR -111 151 37 492 214 71 14 chr1 73907839 73907979 -208285685 - MER103 DNA DNA -9 157 10 22 0 0 0 chr1 73907979 73908001 -208285663 + AT_rich Low_complexity Low_complexity 1 22 0 2098 130 3 0 chr1 73910397 73910690 -208282974 + AluSx SINE Alu 1 294 -18 207 0 0 0 chr1 73911732 73911755 -208281909 + (T)n Simple_repeat Simple_repeat 1 23 0 282 333 61 55 chr1 73912685 73912850 -208280814 - L2 LINE L2 -196 3076 2911 557 151 161 0 chr1 73914193 73914286 -208279378 + Tigger3(Golem) DNA MER2_type 1 108 -2921 484 16 0 32 chr1 73914277 73914340 -208279324 + Tigger3(Golem) DNA MER2_type 2278 2338 -691 * 551 133 0 11 chr1 73914340 73914430 -208279234 - AluSg/x SINE Alu -3 306 218 288 154 0 0 chr1 73914523 73914575 -208279089 + T-rich Low_complexity Low_complexity 1 52 0 4109 123 19 47 chr1 73914583 73914987 -208278677 + Tigger3(Golem) DNA MER2_type 2328 2705 -323 2369 99 3 0 chr1 73914987 73915299 -208278365 - AluSp SINE Alu 0 313 1 4109 123 19 47 chr1 73915299 73915615 -208278049 + Tigger3(Golem) DNA MER2_type 2705 3028 0 1290 115 40 75 chr1 73915833 73916059 -208277605 + AluJb SINE Alu 86 303 -9 193 239 43 0 chr1 73916145 73916191 -208277473 - L2 LINE L2 -95 3218 3171 348 240 94 21 chr1 73917387 73917483 -208276181 + L2 LINE L2 3162 3264 -8 268 300 0 0 chr1 73918002 73918062 -208275602 - L2 LINE L2 -25 3247 3188 21 0 0 0 chr1 73918103 73918124 -208275540 + AT_rich Low_complexity Low_complexity 1 21 0 320 26 0 0 chr1 73919097 73919136 -208274528 - 5S rRNA rRNA -30 91 53 281 284 166 36 chr1 73919329 73919607 -208274057 + L2 LINE L2 2452 2765 -549 280 302 92 86 chr1 73919707 73920045 -208273619 + L2 LINE L2 2931 3270 -2 314 279 81 27 chr1 73920075 73920186 -208273478 + L2 LINE L2 3148 3264 -8 267 200 0 0 chr1 73920627 73920682 -208272982 + MIR SINE MIR 88 142 -120 2074 134 3 7 chr1 73923531 73923837 -208269827 - AluSx SINE Alu -7 305 1 1648 168 58 0 chr1 73924609 73924900 -208268764 + AluJb SINE Alu 3 310 -2 207 0 0 0 chr1 73925086 73925109 -208268555 + (CA)n Simple_repeat Simple_repeat 2 24 0 672 243 43 28 chr1 73925193 73925422 -208268242 - MER106B DNA MER1_type 0 236 1 373 274 30 15 chr1 73926016 73926151 -208267513 + MLT1L LTR MaLR 467 603 -12 244 321 23 87 chr1 73926157 73926549 -208267115 - L2 LINE L2 -129 3184 2818 826 176 122 0 chr1 73926578 73926709 -208266955 - FAM SINE Alu -38 147 1 272 329 210 31 chr1 73926724 73927043 -208266621 - L2 LINE L2 -615 2699 2324 189 339 0 0 chr1 73927099 73927164 -208266500 - MIR SINE MIR -15 247 183 1775 112 94 14 chr1 73927633 73927909 -208265755 - AluSg SINE Alu 0 310 13 26 0 0 0 chr1 73928078 73928104 -208265560 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 73928300 73928325 -208265339 + AT_rich Low_complexity Low_complexity 1 25 0 2053 119 0 7 chr1 73928720 73929034 -208264630 + AluSq SINE Alu 1 312 0 272 317 14 76 chr1 73929672 73929753 -208263911 + L2 LINE L2 2566 2636 -678 2107 129 6 10 chr1 73929753 73930064 -208263600 - AluSx SINE Alu -2 310 1 272 317 14 76 chr1 73930064 73930127 -208263537 + L2 LINE L2 2636 2701 -613 449 171 0 0 chr1 73930168 73930250 -208263414 - L1MB5 LINE L1 -21 6153 6072 1350 212 3 70 chr1 73930250 73930595 -208263069 + MER72 LTR ERV1 1 322 -400 1735 175 0 40 chr1 73930624 73930949 -208262715 - AluJo SINE Alu 0 312 1 261 268 6 122 chr1 73930958 73931122 -208262542 + L2 LINE L2 2898 3042 -271 2367 90 3 0 chr1 73931336 73931637 -208262027 - AluSx SINE Alu -10 302 1 192 338 162 7 chr1 73932205 73932341 -208261323 + L2 LINE L2 3116 3272 0 4097 87 33 12 chr1 73932383 73932961 -208260703 - L1MA3 LINE L1 0 6305 5716 324 290 100 40 chr1 73933424 73933624 -208260040 + L1MC4a LINE L1 5269 5480 -2328 621 268 112 29 chr1 73933643 73933760 -208259904 + L1MC4a LINE L1 5539 5645 -525 1818 166 7 10 chr1 73933760 73934067 -208259597 + AluJb SINE Alu 1 306 -6 621 268 112 29 chr1 73934067 73934264 -208259400 + L1MC4a LINE L1 5645 5682 -488 1841 141 56 0 chr1 73934264 73934548 -208259116 + AluSx SINE Alu 1 300 -12 621 268 112 29 chr1 73934548 73934614 -208259050 + L1MC4a LINE L1 5682 5741 -429 738 218 43 73 chr1 73934838 73934875 -208258789 + L1ME2 LINE L1 5794 5831 -333 2209 101 10 10 chr1 73934875 73935181 -208258483 + AluSx SINE Alu 1 306 -6 738 218 43 73 chr1 73935181 73935377 -208258287 + L1ME2 LINE L1 5831 6020 -144 233 225 125 0 chr1 73936389 73936469 -208257195 + MIR SINE MIR 168 257 -5 2131 133 3 3 chr1 73936960 73937269 -208256395 - AluSc SINE Alu 0 309 1 1930 133 0 4 chr1 73937943 73938213 -208255451 - AluSx SINE Alu -43 269 1 878 130 29 0 chr1 73938235 73938373 -208255291 - L1MB4 LINE L1 -1 6179 6038 491 257 95 14 chr1 73938425 73938573 -208255091 - MIR3 SINE MIR -16 192 33 1965 201 53 73 chr1 73938758 73939289 -208254375 + MLT2B1 LTR ERVL 1 520 0 272 293 53 0 chr1 73939618 73939693 -208253971 - L2 LINE L2 -33 3239 3161 2213 114 170 32 chr1 73940111 73940487 -208253177 + MSTA LTR MaLR 1 428 0 262 233 68 92 chr1 73940536 73940699 -208252965 + L1ME4a LINE L1 5751 5909 -212 278 25 0 25 chr1 73941148 73941188 -208252476 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 218 344 83 10 chr1 73941533 73941629 -208252035 + L2 LINE L2 3164 3266 -6 2596 43 0 0 chr1 73941981 73942281 -208251383 - AluY SINE Alu -11 300 1 299 371 22 0 chr1 73942969 73943058 -208250606 - L2 LINE L2 -15 3298 3208 1972 203 112 16 chr1 73943240 73943688 -208249976 + MER74A LTR ERVL 68 558 0 1707 257 182 27 chr1 73943852 73944854 -208248810 - L2 LINE L2 -2 3311 2153 723 251 114 48 chr1 73944854 73945169 -208248495 + L2 LINE L2 2945 3280 -33 2206 96 0 0 chr1 73945207 73945489 -208248175 - AluSx SINE Alu -14 298 17 910 256 31 20 chr1 73945575 73945829 -208247835 - MIR SINE MIR -1 261 5 22 56 0 0 chr1 73946199 73946235 -208247429 + AT_rich Low_complexity Low_complexity 1 36 0 226 196 0 0 chr1 73946889 73946935 -208246729 - AluJb SINE Alu 0 299 254 672 86 0 0 chr1 73946939 73947020 -208246644 + AluSg/x SINE Alu 216 296 -16 1392 178 16 8 chr1 73947031 73947278 -208246386 - AluJb SINE Alu -63 249 1 1940 121 0 54 chr1 73947320 73947654 -208246010 - AluSx SINE Alu 0 320 3 270 346 50 39 chr1 73947870 73948049 -208245615 + MER5A DNA MER1_type 6 186 -3 410 249 207 10 chr1 73948332 73948525 -208245139 + MIR SINE MIR 21 251 -11 957 183 0 119 chr1 73948596 73948847 -208244817 + AluJo SINE Alu 82 302 -10 1318 234 39 79 chr1 73948867 73949087 -208244577 - MLT1C LTR MaLR -23 444 250 2487 123 19 27 chr1 73949087 73949454 -208244210 - THE1B LTR MaLR 0 364 1 1318 234 39 79 chr1 73949454 73949690 -208243974 - MLT1C LTR MaLR -217 250 6 1591 249 77 55 chr1 73949704 73950061 -208243603 + MLT1J LTR MaLR 1 373 -138 1497 196 35 3 chr1 73950061 73950346 -208243318 + AluJb SINE Alu 3 296 -16 1591 249 77 55 chr1 73950346 73950481 -208243183 + MLT1J LTR MaLR 373 504 -7 1344 273 61 16 chr1 73951092 73951469 -208242195 - MLT1I LTR MaLR -9 400 7 708 296 52 50 chr1 73952818 73953280 -208240384 + L2 LINE L2 1623 2085 -1229 771 273 100 54 chr1 73953853 73954242 -208239422 + MLT1I LTR MaLR 1 407 -2 586 313 117 40 chr1 73954979 73955477 -208238187 + L2 LINE L2 2170 2705 -609 451 261 26 59 chr1 73955482 73955582 -208238082 - L2 LINE L2 -3 3310 3215 189 0 0 0 chr1 73955582 73955603 -208238061 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 451 261 26 59 chr1 73955603 73955655 -208238009 - L2 LINE L2 -98 3215 3163 189 0 0 0 chr1 73956148 73956169 -208237495 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1689 170 35 7 chr1 73956175 73956458 -208237206 - AluJo SINE Alu -21 291 1 873 309 70 18 chr1 73956664 73957052 -208236612 - MLT1I LTR MaLR 0 409 2 270 265 61 10 chr1 73957209 73957307 -208236357 + L2 LINE L2 2932 3034 -238 280 293 81 45 chr1 73957338 73957584 -208236080 + L1MC4 LINE L1 6765 7019 -1023 513 139 28 0 chr1 73957602 73957674 -208235990 - FLAM SINE Alu -10 133 60 2463 57 27 0 chr1 73957700 73957999 -208235665 + AluY SINE Alu 2 308 -3 2189 123 0 7 chr1 73958241 73958541 -208235123 + AluSx SINE Alu 1 298 -14 2126 167 8 42 chr1 73959804 73960182 -208233482 + MLT1A1 LTR MaLR 1 365 0 1159 314 63 22 chr1 73960225 73960671 -208232993 - LTR16B LTR ERVL 0 464 1 1667 344 73 27 chr1 73960699 73961458 -208232206 - ERVL LTR ERVL -17 5366 4618 2204 134 49 81 chr1 73961458 73961904 -208231760 - MSTB1 LTR MaLR 0 432 1 1667 344 73 27 chr1 73961904 73962621 -208231043 - ERVL LTR ERVL -765 4618 3935 1871 295 65 46 chr1 73962650 73963435 -208230229 - ERVL LTR ERVL -1901 3095 2302 1723 178 4 127 chr1 73963435 73963477 -208230187 - MLT2D LTR ERVL 0 414 368 462 18 0 0 chr1 73963477 73963532 -208230132 + (TG)n Simple_repeat Simple_repeat 1 55 0 1723 178 4 127 chr1 73963532 73963961 -208229703 - MLT2D LTR ERVL -46 368 1 1871 295 65 46 chr1 73963961 73964102 -208229562 - ERVL LTR ERVL -2694 2302 2165 814 242 58 0 chr1 73964106 73964346 -208229318 - ERVL LTR ERVL -2976 2020 1767 181 167 56 74 chr1 73964346 73964400 -208229264 + L3 LINE CR1 1157 1209 -368 1307 299 53 40 chr1 73964477 73965075 -208228589 - ERVL LTR ERVL -3424 1572 967 1130 282 21 33 chr1 73965380 73965805 -208227859 - LTR16B LTR ERVL 0 464 45 21 0 0 0 chr1 73966483 73966504 -208227160 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 73966772 73966793 -208226871 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 73967115 73967140 -208226524 + AT_rich Low_complexity Low_complexity 1 25 0 530 309 90 0 chr1 73967209 73967387 -208226277 + MIR SINE MIR 20 213 -49 1101 161 0 0 chr1 73967602 73967782 -208225882 + Tigger3(Golem) DNA MER2_type 2 181 -2848 * 4793 116 45 31 chr1 73967780 73968657 -208225007 + Tigger3(Golem) DNA MER2_type 2141 3029 0 252 269 74 0 chr1 73968669 73968777 -208224887 + L2 LINE L2 1937 2052 -1262 260 207 112 35 chr1 73969152 73969268 -208224396 + L2 LINE L2 2092 2216 -1098 1192 136 27 5 chr1 73969306 73969490 -208224174 - AluJ SINE Alu -5 307 120 806 173 0 0 chr1 73969668 73969801 -208223863 - AluJ SINE Alu -179 133 1 32 26 0 0 chr1 73969805 73969844 -208223820 + AT_rich Low_complexity Low_complexity 1 39 0 1503 172 88 0 chr1 73969916 73970177 -208223487 + AluJb SINE Alu 1 284 -28 351 0 0 0 chr1 73970177 73970216 -208223448 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 208 253 11 92 chr1 73970218 73970305 -208223359 - MIR SINE MIR -70 192 113 210 236 36 18 chr1 73970514 73970569 -208223095 - MIR SINE MIR -205 57 2 365 301 64 6 chr1 73970641 73970797 -208222867 + MIR SINE MIR 16 180 -82 249 335 92 12 chr1 73970904 73971077 -208222587 + L2 LINE L2 2575 2761 -553 225 310 138 0 chr1 73971217 73971333 -208222331 + L2 LINE L2 2890 3021 -251 255 231 19 0 chr1 73971506 73971558 -208222106 + L2 LINE L2 3259 3311 -2 4651 40 37 0 chr1 73971753 73972327 -208221337 + L1PA4 LINE L1 5542 6136 -19 201 39 0 0 chr1 73972330 73972356 -208221308 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 552 252 84 64 chr1 73972761 73973011 -208220653 - MER112 DNA MER1_type 0 256 2 451 304 0 60 chr1 73973165 73973317 -208220347 + MARNA DNA Mariner 277 418 -168 2361 74 0 7 chr1 73973317 73973614 -208220050 + AluSc SINE Alu 1 295 -14 451 304 0 60 chr1 73973614 73973645 -208220019 + MARNA DNA Mariner 418 449 -137 24 0 0 0 chr1 73973680 73973704 -208219960 + AT_rich Low_complexity Low_complexity 1 24 0 466 279 150 34 chr1 73974065 73974427 -208219237 + L1ME4a LINE L1 5507 5920 -201 1654 190 90 17 chr1 73974449 73974871 -208218793 - L1MB5 LINE L1 -21 6153 5701 318 244 31 71 chr1 73975006 73975133 -208218531 + MIR SINE MIR 124 245 -17 225 0 0 0 chr1 73975194 73975219 -208218445 + (T)n Simple_repeat Simple_repeat 1 25 0 39 74 0 0 chr1 73976001 73976082 -208217582 + GC_rich Low_complexity Low_complexity 1 81 0 23 68 0 0 chr1 73976326 73976370 -208217294 + GC_rich Low_complexity Low_complexity 1 44 0 240 234 47 0 chr1 73976780 73976844 -208216820 - MIR SINE MIR -72 136 70 356 244 81 38 chr1 73977321 73977481 -208216183 - L1ME4a LINE L1 0 6121 5955 22 35 0 0 chr1 73978040 73978069 -208215595 + AT_rich Low_complexity Low_complexity 1 29 0 2228 112 0 10 chr1 73978672 73978984 -208214680 - AluSx SINE Alu -3 309 1 267 349 40 62 chr1 73979381 73979653 -208214011 + L2 LINE L2 2503 2768 -546 22 0 0 0 chr1 73979749 73979771 -208213893 + AT_rich Low_complexity Low_complexity 1 22 0 1661 173 19 23 chr1 73980001 73980308 -208213356 - AluJb SINE Alu -6 306 1 2431 78 0 0 chr1 73980373 73980680 -208212984 - AluSx SINE Alu -5 307 1 30 27 0 0 chr1 73980811 73980848 -208212816 + AT_rich Low_complexity Low_complexity 1 37 0 1263 148 13 42 chr1 73981461 73981698 -208211966 - AluJo SINE Alu 0 312 83 590 130 23 99 chr1 73982746 73982877 -208210787 - FAM SINE Alu -9 40 1 48 43 0 0 chr1 73982898 73982967 -208210697 + AT_rich Low_complexity Low_complexity 1 69 0 34 24 0 0 chr1 73983014 73983055 -208210609 + AT_rich Low_complexity Low_complexity 1 41 0 773 253 116 29 chr1 73983253 73983693 -208209971 + LTR33 LTR ERVL 1 515 -6 301 292 15 23 chr1 73984123 73984253 -208209411 + MLT1K LTR MaLR 449 577 -11 1423 201 4 8 chr1 73984261 73984520 -208209144 - AluJb SINE Alu -54 258 1 21 0 0 0 chr1 73984520 73984541 -208209123 + AT_rich Low_complexity Low_complexity 1 21 0 266 303 66 25 chr1 73984564 73984686 -208208978 - L3 LINE CR1 -155 1422 1296 2334 63 33 20 chr1 73984686 73984987 -208208677 - AluSg SINE Alu -5 305 1 407 318 0 53 chr1 73985010 73985161 -208208503 - L3 LINE CR1 -379 1198 1056 620 318 48 24 chr1 73985213 73985465 -208208199 - MIR SINE MIR 0 262 5 222 302 63 0 chr1 73985501 73985564 -208208100 + L2 LINE L2 3169 3235 -37 243 0 0 0 chr1 73986890 73986917 -208206747 + (T)n Simple_repeat Simple_repeat 1 27 0 265 157 0 0 chr1 73986984 73987035 -208206629 - L1MC4 LINE L1 -7 8035 7985 819 197 115 34 chr1 73987257 73987675 -208205989 - L1MC4 LINE L1 -502 7540 6935 2938 173 53 8 chr1 73987676 73988294 -208205370 - L1MD3 LINE L1 -3 7992 7347 1427 240 139 14 chr1 73988291 73988424 -208205240 - L1MC4 LINE L1 -1091 6951 6836 * 1449 197 66 40 chr1 73988424 73988804 -208204860 + MLT1B LTR MaLR 1 390 0 1427 240 139 14 chr1 73988804 73989108 -208204556 - L1MC4 LINE L1 -1206 6836 6459 2249 189 55 34 chr1 73989468 73990030 -208203634 + MLT1E2 LTR MaLR 53 626 0 40 21 0 0 chr1 73990054 73990101 -208203563 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr1 73990348 73990374 -208203290 + AT_rich Low_complexity Low_complexity 1 26 0 2319 78 3 3 chr1 73990374 73990682 -208202982 - AluY SINE Alu -3 308 1 2302 85 0 0 chr1 73990684 73990979 -208202685 - AluY SINE Alu -16 295 1 240 335 121 28 chr1 73991096 73991278 -208202386 - L2 LINE L2 -2 3311 3113 234 239 34 34 chr1 73991343 73991431 -208202233 - MLT1J LTR MaLR -350 161 74 199 331 84 56 chr1 73991580 73991758 -208201906 - L2 LINE L2 -254 3018 2836 548 235 125 55 chr1 73992100 73992300 -208201364 + MIR SINE MIR 48 261 -1 236 339 0 25 chr1 73992520 73992638 -208201026 - L2 LINE L2 -994 2320 2206 969 246 89 6 chr1 73992639 73992988 -208200676 + L1ME LINE L1 3896 4273 -1873 1407 135 0 22 chr1 73992991 73993213 -208200451 + AluJo SINE Alu 1 217 -95 2821 232 86 33 chr1 73993220 73994191 -208199473 + L1ME LINE L1 4274 5193 -973 2184 78 42 0 chr1 73994191 73994474 -208199190 + AluY SINE Alu 1 295 -16 2821 232 86 33 chr1 73994474 73994783 -208198881 + L1ME LINE L1 5193 5484 -682 2231 104 0 3 chr1 73994783 73995080 -208198584 + AluSp SINE Alu 1 296 -17 342 0 0 0 chr1 73995081 73995119 -208198545 + (CA)n Simple_repeat Simple_repeat 2 39 0 2821 232 86 33 chr1 73995119 73995290 -208198374 + L1ME LINE L1 5483 5818 -348 256 305 53 14 chr1 73995559 73995841 -208197823 + L1ME3 LINE L1 4978 5270 -876 1843 144 36 21 chr1 73995841 73996175 -208197489 - MLT2C1 LTR ERVL -58 339 1 865 275 68 36 chr1 73996189 73996720 -208196944 + L1ME3 LINE L1 5401 5948 -214 295 235 160 8 chr1 73998498 73998617 -208195047 + MIR SINE MIR 2 138 -124 27 29 0 0 chr1 73999239 73999273 -208194391 + AT_rich Low_complexity Low_complexity 1 34 0 210 71 0 0 chr1 73999719 73999747 -208193917 + (TGG)n Simple_repeat Simple_repeat 1 28 0 948 276 42 37 chr1 74000622 74001002 -208192662 + MLT1I LTR MaLR 3 384 -25 509 343 82 20 chr1 74001056 74001397 -208192267 - L1ME3A LINE L1 -229 5941 5580 3942 259 52 19 chr1 74001399 74002950 -208190714 + L1MEc LINE L1 488 2090 -4306 25 0 0 0 chr1 74003337 74003362 -208190302 + AT_rich Low_complexity Low_complexity 1 25 0 203 295 66 0 chr1 74003567 74003628 -208190036 - L2 LINE L2 0 3272 3208 213 361 62 54 chr1 74003921 74004181 -208189483 - L2 LINE L2 -409 2905 2644 8987 66 7 2 chr1 74004351 74006315 -208187349 - L1PA6 LINE L1 -4 6150 4174 389 358 8 8 chr1 74006513 74006633 -208187031 + L2 LINE L2 3116 3235 -37 304 231 119 25 chr1 74006805 74006896 -208186768 - L2 LINE L2 -1210 2104 2023 2175 126 3 7 chr1 74006896 74007206 -208186458 + AluSx SINE Alu 1 309 -3 304 231 119 25 chr1 74007206 74007274 -208186390 - L2 LINE L2 -1291 2023 1930 409 219 101 30 chr1 74008566 74008735 -208184929 - MER112 DNA MER1_type -48 212 32 319 303 51 67 chr1 74009529 74009724 -208183940 - L2 LINE L2 0 3313 3122 27 62 0 0 chr1 74009835 74009883 -208183781 + AT_rich Low_complexity Low_complexity 1 48 0 208 328 0 33 chr1 74009923 74010045 -208183619 + CT-rich Low_complexity Low_complexity 3 120 0 188 143 52 0 chr1 74010099 74010167 -208183497 + (TA)n Simple_repeat Simple_repeat 2 76 -6 1751 148 60 19 chr1 74010167 74010533 -208183131 - L1MA8 LINE L1 -6 6285 5905 188 143 52 0 chr1 74010533 74010541 -208183123 + (TA)n Simple_repeat Simple_repeat 76 82 0 1358 172 54 35 chr1 74010549 74010810 -208182854 - AluJo SINE Alu -20 292 27 548 322 126 5 chr1 74010943 74011142 -208182522 - L3 LINE CR1 -16 1561 1339 2342 111 0 9 chr1 74013048 74013363 -208180301 - AluSx SINE Alu 0 312 1 180 175 150 0 chr1 74013530 74013570 -208180094 + L2 LINE L2 3226 3271 -1 483 180 0 0 chr1 74013708 74013797 -208179867 - MER53 DNA DNA -100 89 1 6824 41 7 18 chr1 74013950 74014893 -208178771 - L1PA6 LINE L1 -59 6095 5163 1140 34 7 0 chr1 74014884 74015032 -208178632 + L1PA6 LINE L1 5036 5184 -962 * 197 380 154 30 chr1 74015062 74015261 -208178403 + L2 LINE L2 1784 1957 -1357 1662 181 29 4 chr1 74015261 74015565 -208178099 + AluJo SINE Alu 1 311 0 197 380 154 30 chr1 74015565 74016226 -208177438 + L2 LINE L2 1957 2752 -562 288 217 181 7 chr1 74016322 74016460 -208177204 - L1M4 LINE L1 -2112 4034 3873 2382 93 3 0 chr1 74016527 74016828 -208176836 - AluSx SINE Alu -10 302 1 460 327 56 44 chr1 74017061 74017565 -208176099 - HAL1 LINE L1 -770 1737 1228 2135 124 0 7 chr1 74017668 74017967 -208175697 + AluSx SINE Alu 1 297 -15 528 210 50 25 chr1 74018058 74018177 -208175487 + MIR SINE MIR 118 239 -23 2532 70 0 0 chr1 74019350 74019651 -208174013 + AluY SINE Alu 1 301 -10 2329 90 3 0 chr1 74019671 74019970 -208173694 + AluY SINE Alu 1 300 -11 721 192 0 0 chr1 74020048 74020168 -208173496 - AluJb SINE Alu -192 120 1 31 26 0 0 chr1 74020768 74020806 -208172858 + AT_rich Low_complexity Low_complexity 1 38 0 2941 184 28 4 chr1 74021308 74021814 -208171850 + Tigger7 DNA MER2_type 1 518 -215 587 181 0 0 chr1 74021814 74021908 -208171756 + Tigger7 DNA MER2_type 2494 2587 0 1634 263 76 69 chr1 74021991 74022701 -208170963 - MER21B LTR ERV1 -125 738 24 755 320 69 9 chr1 74022760 74023079 -208170585 - L3 LINE CR1 -22 1555 1218 261 219 62 10 chr1 74023206 74023302 -208170362 - Charlie7 DNA MER1_type -2451 161 61 415 323 87 39 chr1 74023369 74023598 -208170066 - L3 LINE CR1 -397 1180 941 211 299 62 68 chr1 74024023 74024081 -208169583 + L2 LINE L2 3032 3089 -224 2255 113 0 0 chr1 74024081 74024381 -208169283 + AluSx SINE Alu 1 300 -12 211 299 62 68 chr1 74024381 74024499 -208169165 + L2 LINE L2 3089 3207 -106 8843 225 61 16 chr1 74024722 74025289 -208168375 - L1ME1 LINE L1 -5 6161 5621 2379 55 42 0 chr1 74025289 74025578 -208168086 + AluY SINE Alu 1 301 -10 8843 225 61 16 chr1 74025578 74028468 -208165196 - L1ME1 LINE L1 -545 5621 2550 894 234 40 0 chr1 74028671 74028898 -208164766 - L1ME1 LINE L1 -3591 2555 2320 5616 9 0 0 chr1 74029085 74029715 -208163949 - L1PA2 LINE L1 -2 6153 5524 6092 130 16 57 chr1 74029956 74030597 -208163067 - L1MA5 LINE L1 -4 6296 5630 1959 134 16 3 chr1 74030597 74030902 -208162762 - AluSx SINE Alu -3 309 1 6092 130 16 57 chr1 74030902 74031711 -208161953 - L1MA5 LINE L1 -670 5630 4892 38 22 0 0 chr1 74032229 74032274 -208161390 + AT_rich Low_complexity Low_complexity 1 45 0 1893 162 0 14 chr1 74032274 74032564 -208161100 - AluSx SINE Alu -26 286 1 3208 111 75 40 chr1 74032699 74032753 -208160911 - MER41B LTR ERV1 -86 549 498 2284 96 3 3 chr1 74032753 74033056 -208160608 + AluSg SINE Alu 1 303 -7 3208 111 75 40 chr1 74033056 74033531 -208160133 - MER41B LTR ERV1 -137 498 1 266 319 62 56 chr1 74033682 74033842 -208159822 + L2 LINE L2 3149 3309 -4 24 77 0 0 chr1 74034082 74034134 -208159530 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr1 74034583 74034620 -208159044 + AT_rich Low_complexity Low_complexity 1 37 0 399 352 36 36 chr1 74034898 74035091 -208158573 - L2 LINE L2 0 3272 3080 702 275 111 53 chr1 74035116 74035612 -208158052 + L2 LINE L2 2766 3313 0 21 0 0 0 chr1 74035730 74035751 -208157913 + AT_rich Low_complexity Low_complexity 1 21 0 31 82 0 0 chr1 74036622 74036695 -208156969 + AT_rich Low_complexity Low_complexity 1 73 0 1277 161 5 9 chr1 74037378 74037595 -208156069 + AluJb SINE Alu 85 300 -12 822 267 10 5 chr1 74037703 74037898 -208155766 + MER63A DNA MER1_type 1 196 -14 25 65 0 0 chr1 74038084 74038130 -208155534 + AT_rich Low_complexity Low_complexity 1 46 0 207 100 0 0 chr1 74038665 74038695 -208154969 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 2185 128 0 0 chr1 74039621 74039925 -208153739 - AluSx SINE Alu -8 304 1 728 343 98 33 chr1 74040103 74040532 -208153132 + L3 LINE CR1 1110 1566 -11 315 0 0 0 chr1 74040653 74040688 -208152976 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 3629 136 67 1 chr1 74040758 74041414 -208152250 - L1MB4 LINE L1 -3 6177 5479 1652 209 6 31 chr1 74041415 74041770 -208151894 - MLT1A1 LTR MaLR -17 348 3 1102 146 10 10 chr1 74041772 74041977 -208151687 - L1MB4 LINE L1 -709 5471 5267 4773 141 8 1 chr1 74041977 74042716 -208150948 + Tigger2 DNA MER2_type 1 744 -1974 1368 138 79 4 chr1 74042776 74043016 -208150648 + Tigger2 DNA MER2_type 2451 2708 -10 2100 97 0 56 chr1 74043227 74043548 -208150116 + AluSg SINE Alu 1 303 -7 282 116 0 0 chr1 74043548 74043591 -208150073 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 233 313 15 0 chr1 74043657 74043724 -208149940 + MIR3 SINE MIR 139 206 -2 480 239 69 40 chr1 74044404 74044616 -208149048 + L1MC4a LINE L1 5652 5810 -311 378 0 0 0 chr1 74044994 74045036 -208148628 + (CA)n Simple_repeat Simple_repeat 2 43 0 192 40 0 0 chr1 74045049 74045074 -208148590 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1098 134 6 0 chr1 74045092 74045256 -208148408 - AluJb SINE Alu -18 294 130 1833 159 0 27 chr1 74045269 74045564 -208148100 - AluSx SINE Alu -25 287 1 22 0 0 0 chr1 74045736 74045758 -208147906 + AT_rich Low_complexity Low_complexity 1 22 0 248 169 36 12 chr1 74045762 74045845 -208147819 + A-rich Low_complexity Low_complexity 5 89 0 1060 246 14 0 chr1 74046219 74046439 -208147225 + MER58A DNA MER1_type 2 224 0 437 362 122 4 chr1 74046924 74047178 -208146486 + L3 LINE CR1 415 698 -879 28 91 0 0 chr1 74047248 74047325 -208146339 + AT_rich Low_complexity Low_complexity 1 77 0 7140 52 2 0 chr1 74047847 74049073 -208144591 + L1PA5 LINE L1 4923 6151 -3 195 290 203 0 chr1 74049088 74049157 -208144507 - MIR SINE MIR -109 153 71 2126 264 86 53 chr1 74049344 74049416 -208144248 + L1ME LINE L1 9 77 -6004 2456 70 0 0 chr1 74049416 74049717 -208143947 + AluY SINE Alu 1 301 -10 2126 264 86 53 chr1 74049717 74050912 -208142752 + L1ME LINE L1 77 1588 -4493 527 182 8 41 chr1 74050932 74051053 -208142611 - MER20 DNA MER1_type -3 216 100 676 297 63 13 chr1 74051150 74051547 -208142117 + L1ME LINE L1 1734 2150 -4111 6321 81 54 9 chr1 74051575 74052654 -208141010 - L1PA14 LINE L1 -9 6152 5054 1563 197 13 0 chr1 74052727 74053032 -208140632 + L1P LINE L1 4786 5094 -1052 1285 170 111 48 chr1 74053018 74053166 -208140498 + L1M4 LINE L1 1076 1213 -5329 * 2423 58 0 3 chr1 74053166 74053461 -208140203 + AluY SINE Alu 1 294 -17 1285 170 111 48 chr1 74053461 74053689 -208139975 + L1M4 LINE L1 1213 1476 -5066 * 2815 159 44 30 chr1 74053680 74054277 -208139387 + L1MB7 LINE L1 5478 6082 -102 21 0 0 0 chr1 74054587 74054608 -208139056 + AT_rich Low_complexity Low_complexity 1 21 0 2235 125 0 0 chr1 74054963 74055267 -208138397 - AluSx SINE Alu -8 304 1 2193 120 0 3 chr1 74055807 74056116 -208137548 + AluSx SINE Alu 1 308 -4 28 0 0 0 chr1 74056338 74056366 -208137298 + AT_rich Low_complexity Low_complexity 1 28 0 2003 240 135 33 chr1 74057287 74058325 -208135339 - L2 LINE L2 0 3313 2158 549 229 45 60 chr1 74058357 74058558 -208135106 - L2 LINE L2 -1884 1430 1233 252 293 65 32 chr1 74058573 74058696 -208134968 + L3 LINE CR1 1279 1405 -172 991 233 69 16 chr1 74059832 74060149 -208133515 - L1MB2 LINE L1 -2 6169 5836 351 304 52 9 chr1 74060750 74060865 -208132799 - L1MC5 LINE L1 -88 7873 7754 232 245 214 20 chr1 74061388 74061486 -208132178 - MER5A DNA MER1_type -64 125 9 1466 196 54 27 chr1 74062821 74063152 -208130512 + MER58B DNA MER1_type 2 341 0 263 245 99 129 chr1 74067843 74068076 -208125588 + L2 LINE L2 2533 2758 -556 238 194 254 0 chr1 74068361 74068428 -208125236 + L2 LINE L2 3189 3272 0 335 270 135 37 chr1 74069810 74069973 -208123691 + MIR SINE MIR 20 198 -64 2653 16 0 3 chr1 74070024 74070330 -208123334 + AluY SINE Alu 1 305 -6 205 222 44 0 chr1 74071491 74071536 -208122128 + L2 LINE L2 3209 3255 -17 1571 127 51 25 chr1 74071713 74071988 -208121676 + AluJo SINE Alu 1 282 -30 516 256 71 9 chr1 74073009 74073220 -208120444 + L1ME4a LINE L1 5555 5778 -343 321 208 120 16 chr1 74073366 74073491 -208120173 + L1ME4a LINE L1 5967 6104 -17 262 327 44 9 chr1 74074579 74074692 -208118972 + MIR SINE MIR 51 167 -95 207 326 54 54 chr1 74074791 74074883 -208118781 + L2 LINE L2 3209 3300 -13 717 255 95 13 chr1 74074922 74075153 -208118511 - MIR SINE MIR 0 262 13 451 68 68 45 chr1 74075704 74075792 -208117872 + AluSc SINE Alu 42 131 -178 415 311 85 9 chr1 74076124 74076336 -208117328 + MIR SINE MIR 33 260 -2 324 292 75 1 chr1 74076917 74077044 -208116620 + MIR SINE MIR 24 161 -47 213 288 213 0 chr1 74077605 74077685 -208115979 + MIR SINE MIR 52 148 -60 235 374 8 24 chr1 74078233 74078356 -208115308 + MIR3 SINE MIR 36 156 -52 418 270 133 19 chr1 74079225 74079395 -208114269 + MIR SINE MIR 39 230 -32 236 173 0 19 chr1 74079590 74079642 -208114022 + MLT1C LTR MaLR 201 251 -216 1625 170 3 20 chr1 74080335 74080629 -208113035 - AluJo SINE Alu -16 296 8 398 234 131 0 chr1 74082392 74082499 -208111165 + L2 LINE L2 3193 3313 0 711 270 6 11 chr1 74083255 74083429 -208110235 - MIR SINE MIR -16 246 74 233 333 34 8 chr1 74083863 74083980 -208109684 + MIR SINE MIR 123 242 -20 414 211 263 47 chr1 74084500 74084690 -208108974 + MIR SINE MIR 13 243 -19 305 259 121 19 chr1 74084725 74084886 -208108778 + MIR SINE MIR 53 243 -19 281 303 82 25 chr1 74084911 74085033 -208108631 - L2 LINE L2 -5 3267 3139 480 273 17 26 chr1 74085583 74085749 -208107915 + MIR3 SINE MIR 31 197 -11 197 246 31 0 chr1 74086029 74086094 -208107570 + L2 LINE L2 2986 3052 -220 250 392 42 8 chr1 74086211 74086331 -208107333 + L2 LINE L2 3148 3271 -1 571 130 102 0 chr1 74086883 74086991 -208106673 + L1MD3 LINE L1 7871 7989 -6 224 288 30 0 chr1 74087109 74087175 -208106489 + MIR SINE MIR 119 186 -76 402 269 39 0 chr1 74087500 74087604 -208106060 + MIR SINE MIR 119 226 -36 183 333 0 30 chr1 74089275 74089341 -208104323 + L2 LINE L2 3188 3251 -62 205 326 90 0 chr1 74089388 74089477 -208104187 + L2 LINE L2 3172 3268 -4 181 345 35 43 chr1 74089583 74089699 -208103965 + L2 LINE L2 2932 3046 -226 1082 272 55 62 chr1 74089739 74090158 -208103506 - L2 LINE L2 0 3313 2898 678 311 49 55 chr1 74090279 74090607 -208103057 + L3 LINE CR1 1144 1469 -108 770 181 0 36 chr1 74090772 74090910 -208102754 - FLAM_A SINE Alu 0 133 1 2114 86 4 0 chr1 74091555 74091877 -208101787 - AluSx SINE Alu 0 326 4 333 0 0 0 chr1 74091954 74091991 -208101673 + (TG)n Simple_repeat Simple_repeat 2 38 0 447 19 0 0 chr1 74092059 74092111 -208101553 + (TG)n Simple_repeat Simple_repeat 2 53 0 259 241 12 60 chr1 74093284 74093367 -208100297 + MIR SINE MIR 2 80 -182 397 147 15 0 chr1 74093377 74093445 -208100219 - MER116 DNA Mariner -11 69 1 625 204 136 27 chr1 74093446 74093593 -208100071 + MIR SINE MIR 79 241 -21 299 282 106 28 chr1 74093939 74094081 -208099583 + MIR SINE MIR 35 187 -75 266 272 11 11 chr1 74094379 74094471 -208099193 - HERVK13 LTR ERVK -7134 982 891 251 267 12 12 chr1 74094445 74094531 -208099133 - HERVK13 LTR ERVK -7134 982 897 * 748 296 126 20 chr1 74094687 74095139 -208098525 - L1ME4a LINE L1 -70 6051 5552 195 349 46 0 chr1 74096284 74096393 -208097271 - MIR3 SINE MIR -2 206 93 381 298 181 15 chr1 74096636 74096841 -208096823 + MIR SINE MIR 24 262 0 1820 145 7 0 chr1 74096903 74097185 -208096479 - AluJb SINE Alu -24 288 5 585 284 138 22 chr1 74097237 74097469 -208096195 - MIR SINE MIR -1 261 3 982 244 13 18 chr1 74097533 74097762 -208095902 + MIR SINE MIR 35 262 0 2049 100 4 0 chr1 74098838 74099118 -208094546 + AluSp SINE Alu 1 281 -32 297 51 0 0 chr1 74099140 74099179 -208094485 + (GA)n Simple_repeat Simple_repeat 2 40 0 321 300 27 0 chr1 74100057 74100167 -208093497 + MER117 DNA MER1_type 47 159 -38 272 110 343 14 chr1 74100794 74100867 -208092797 - L2 LINE L2 -2 3270 3174 306 256 58 35 chr1 74101330 74101416 -208092248 - MIR SINE MIR -71 191 104 468 305 90 6 chr1 74101432 74101599 -208092065 - L2 LINE L2 0 3313 3133 243 224 14 95 chr1 74102443 74102590 -208091074 + L1ME LINE L1 5647 5781 -340 1300 295 104 26 chr1 74102590 74103241 -208090423 + L2 LINE L2 2258 2959 -355 918 206 22 0 chr1 74103265 74103445 -208090219 + MER20 DNA MER1_type 35 218 -1 695 284 34 61 chr1 74103489 74103816 -208089848 + L2 LINE L2 2996 3313 0 196 256 0 0 chr1 74104852 74104895 -208088769 - MIR SINE MIR -84 124 82 248 282 51 58 chr1 74105016 74105172 -208088492 + MER104 DNA Tc2 11 165 -15 497 220 73 9 chr1 74105218 74105327 -208088337 - MIR SINE MIR -50 212 97 945 186 34 34 chr1 74105359 74105681 -208087983 + Tigger2 DNA MER2_type 1 2685 -33 377 139 164 17 chr1 74106103 74106278 -208087386 + ORSL DNA AcHobo 1 275 0 324 293 123 19 chr1 74106549 74106655 -208087009 + L2 LINE L2 3155 3271 -1 321 291 45 52 chr1 74108687 74108821 -208084843 + MIR3 SINE MIR 76 208 0 181 235 88 29 chr1 74111712 74111780 -208081884 - MIR SINE MIR 0 262 191 1509 127 100 12 chr1 74111781 74112078 -208081586 + AluSx SINE Alu 1 320 0 1437 202 25 0 chr1 74112084 74112366 -208081298 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr1 74112366 74112392 -208081272 + AT_rich Low_complexity Low_complexity 1 26 0 475 286 54 0 chr1 74112392 74112539 -208081125 - MIR SINE MIR -63 199 45 581 154 51 8 chr1 74113515 74113632 -208080032 - L1MB7 LINE L1 0 6184 6063 190 240 185 115 chr1 74113961 74114161 -208079503 - MIR SINE MIR 0 262 49 * 303 238 84 84 chr1 74114159 74114302 -208079362 - MIR3 SINE MIR -65 143 1 190 271 129 24 chr1 74115034 74115119 -208078545 + L2 LINE L2 3133 3226 -46 519 305 94 56 chr1 74115613 74116039 -208077625 + L2 LINE L2 2804 3245 -27 298 297 134 26 chr1 74116496 74116571 -208077093 + L1ME4a LINE L1 5651 5717 -404 2283 97 0 7 chr1 74116571 74116879 -208076785 + AluSc SINE Alu 1 306 -3 298 297 134 26 chr1 74116879 74117184 -208076480 + L1ME4a LINE L1 5717 6072 -49 405 0 0 0 chr1 74117851 74117896 -208075768 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 54 0 0 chr1 74118444 74118481 -208075183 + AT_rich Low_complexity Low_complexity 1 37 0 307 312 102 80 chr1 74118590 74118952 -208074712 - L2 LINE L2 0 3272 2903 191 35 0 35 chr1 74119273 74119302 -208074362 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2294 73 0 0 chr1 74119309 74119581 -208074083 - AluSc SINE Alu -37 272 1 184 45 0 0 chr1 74120048 74120070 -208073594 - MIR SINE MIR -38 224 203 250 269 168 34 chr1 74121482 74121631 -208072033 + MIR SINE MIR 20 188 -74 451 202 0 53 chr1 74121644 74121738 -208071926 + FLAM_A SINE Alu 40 128 -14 813 262 39 21 chr1 74121955 74122188 -208071476 + MIR SINE MIR 6 242 -20 1515 209 0 14 chr1 74123408 74123690 -208069974 - AluJo SINE Alu -32 280 3 272 271 113 30 chr1 74124411 74124544 -208069120 + MIR3 SINE MIR 38 181 -27 564 223 115 19 chr1 74124545 74124702 -208068962 + MIR SINE MIR 13 184 -78 278 222 14 14 chr1 74125124 74125196 -208068468 - LTR67 LTR ERVL 0 557 486 2093 100 0 56 chr1 74125585 74125905 -208067759 + AluSx SINE Alu 1 302 -10 725 242 79 21 chr1 74126284 74126524 -208067140 + MER112 DNA MER1_type 6 259 -1 385 306 117 29 chr1 74127936 74128142 -208065522 + MIR SINE MIR 23 246 -16 2107 119 24 0 chr1 74128256 74128550 -208065114 + AluSx SINE Alu 1 301 -11 22 56 0 0 chr1 74130442 74130478 -208063186 + AT_rich Low_complexity Low_complexity 1 36 0 260 319 110 0 chr1 74130494 74130641 -208063023 - MIR SINE MIR -50 212 46 1139 161 65 5 chr1 74130957 74131174 -208062490 + MER46A DNA MER2_type 2 231 -5 465 332 143 27 chr1 74132042 74132602 -208061062 + L2 LINE L2 2590 3259 -13 1480 170 133 4 chr1 74133080 74133424 -208060240 - L1MB4 LINE L1 -28 6152 5768 345 269 29 14 chr1 74133574 74133690 -208059974 - MIR SINE MIR -72 136 12 232 315 8 62 chr1 74133871 74133975 -208059689 - L2 LINE L2 -10 3303 3195 297 0 0 0 chr1 74133975 74134008 -208059656 + (GA)n Simple_repeat Simple_repeat 1 33 0 252 0 0 0 chr1 74134007 74134035 -208059629 + (TG)n Simple_repeat Simple_repeat 2 29 0 * 232 315 8 62 chr1 74134008 74134060 -208059604 - L2 LINE L2 -118 3195 3181 630 242 91 61 chr1 74134210 74134441 -208059223 + MLT1J LTR MaLR 33 270 -241 452 136 0 0 chr1 74134466 74134525 -208059139 - AluSp/q SINE Alu -30 283 225 221 0 0 33 chr1 74134781 74134811 -208058853 + (TG)n Simple_repeat Simple_repeat 2 30 0 630 242 91 61 chr1 74134984 74135215 -208058449 + MLT1J LTR MaLR 33 270 -241 2267 95 0 0 chr1 74135241 74135524 -208058140 - AluSq SINE Alu -30 283 1 509 300 29 6 chr1 74135729 74135899 -208057765 + MIR SINE MIR 1 174 -88 391 277 11 0 chr1 74136234 74136328 -208057336 - L2 LINE L2 -4 3309 3215 215 305 38 29 chr1 74136368 74136473 -208057191 - MIR3 SINE MIR 0 208 103 351 213 56 19 chr1 74136608 74136716 -208056948 + MER103 DNA DNA 4 115 -51 191 339 31 0 chr1 74136768 74136833 -208056831 + L3 LINE CR1 1511 1577 0 180 111 0 0 chr1 74136931 74136958 -208056706 + (CA)n Simple_repeat Simple_repeat 1 27 0 1039 267 85 35 chr1 74138074 74138237 -208055427 + L2 LINE L2 2093 2246 -1068 1898 148 4 0 chr1 74138237 74138514 -208055150 + AluSq SINE Alu 28 305 -8 1039 267 85 35 chr1 74138514 74138833 -208054831 + L2 LINE L2 2246 2599 -715 230 224 149 15 chr1 74138937 74139004 -208054660 - MIR SINE MIR -88 120 45 1622 63 29 0 chr1 74139694 74139900 -208053764 + L1PA13 LINE L1 5952 6163 0 22 56 0 0 chr1 74140685 74140721 -208052943 + AT_rich Low_complexity Low_complexity 1 36 0 234 128 0 0 chr1 74141174 74141213 -208052451 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1799 152 7 10 chr1 74141736 74142026 -208051638 + AluJb SINE Alu 1 289 -23 2221 106 0 32 chr1 74142749 74143061 -208050603 + AluSx SINE Alu 1 302 -10 787 171 23 0 chr1 74143476 74143605 -208050059 + MER94 DNA DNA 2 133 -1 278 315 42 42 chr1 74143638 74143828 -208049836 - MIR SINE MIR -58 204 12 480 273 56 21 chr1 74144277 74144420 -208049244 + MER5B DNA MER1_type 2 149 -29 451 260 178 0 chr1 74144746 74144915 -208048749 - MIR SINE MIR 0 262 64 1216 148 5 29 chr1 74145228 74145438 -208048226 - AluJb SINE Alu -23 289 85 246 268 188 18 chr1 74145438 74145550 -208048114 + MER94 DNA DNA 4 134 0 310 284 0 0 chr1 74145621 74145695 -208047969 - L2 LINE L2 -5 3267 3194 822 113 0 0 chr1 74145816 74145940 -208047724 + (GGAA)n Simple_repeat Simple_repeat 1 124 0 198 281 78 16 chr1 74146473 74146537 -208047127 - L2 LINE L2 -666 2648 2581 2331 101 3 0 chr1 74146901 74147199 -208046465 - AluSx SINE Alu -13 299 1 440 187 149 0 chr1 74147350 74147457 -208046207 + MIR SINE MIR 70 192 -70 651 227 54 144 chr1 74147461 74147814 -208045850 + HAL1 LINE L1 1 321 -2186 932 216 36 16 chr1 74147888 74148082 -208045582 + MER3 DNA MER1_type 1 198 -11 2033 225 117 132 chr1 74148098 74148891 -208044773 + HAL1 LINE L1 442 1206 -1301 2017 136 3 13 chr1 74148891 74149192 -208044472 + AluSx SINE Alu 1 298 -14 2033 225 117 132 chr1 74149192 74149858 -208043806 + HAL1 LINE L1 1206 1880 -627 357 294 120 27 chr1 74150448 74150632 -208043032 + L1ME3A LINE L1 5965 6165 -5 283 135 0 54 chr1 74151261 74151335 -208042329 + Charlie5 DNA MER1_type 2422 2491 -121 5738 42 3 0 chr1 74151353 74152002 -208041662 - L1PA5 LINE L1 -1 6153 5503 239 194 60 60 chr1 74152270 74152337 -208041327 + L2 LINE L2 3204 3270 -2 1667 181 7 14 chr1 74152595 74152882 -208040782 + AluJb SINE Alu 1 285 -27 198 0 0 0 chr1 74152916 74152938 -208040726 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 351 324 61 0 chr1 74152979 74153127 -208040537 + MIR3 SINE MIR 20 176 -32 505 289 35 45 chr1 74153781 74153982 -208039682 - MIR SINE MIR -44 218 20 340 227 83 45 chr1 74155123 74155249 -208038415 + MIR SINE MIR 18 138 -70 2080 230 67 39 chr1 74156147 74156848 -208036816 - MER20B DNA MER1_type 0 783 63 1938 109 83 42 chr1 74157182 74157452 -208036212 + L1MC1 LINE L1 5999 6285 -48 1881 113 41 38 chr1 74157452 74157745 -208035919 + AluSq SINE Alu 1 294 -19 1938 109 83 42 chr1 74157745 74157787 -208035877 + L1MC1 LINE L1 6285 6324 -9 300 242 207 35 chr1 74158011 74158209 -208035455 - MIR SINE MIR -7 255 24 204 156 0 0 chr1 74158998 74159037 -208034627 - MIR SINE MIR -111 151 114 959 277 23 4 chr1 74159057 74159313 -208034351 + MIR SINE MIR 2 262 0 299 269 141 106 chr1 74159371 74159769 -208033895 + L2 LINE L2 2899 3310 -3 310 301 35 28 chr1 74159771 74159905 -208033759 - MIR SINE MIR -72 136 3 637 340 26 5 chr1 74160172 74160363 -208033301 + MER91A DNA MER1_type 1 195 -1 297 325 13 51 chr1 74160895 74161052 -208032612 + MIR3 SINE MIR 12 162 -46 246 32 0 0 chr1 74161116 74161147 -208032517 + (A)n Simple_repeat Simple_repeat 1 31 0 6623 68 25 2 chr1 74162072 74163420 -208030244 + L1PA7 LINE L1 4694 6077 -77 257 300 0 22 chr1 74163521 74163611 -208030053 + GA-rich Low_complexity Low_complexity 2 89 0 259 211 49 114 chr1 74164368 74164491 -208029173 + L1ME LINE L1 5634 5748 -373 427 283 93 49 chr1 74164569 74164700 -208028964 - MIR SINE MIR 0 262 117 2195 104 3 7 chr1 74164700 74165009 -208028655 + AluSg SINE Alu 1 308 -2 427 283 93 49 chr1 74165009 74165082 -208028582 - MIR SINE MIR -145 117 49 230 229 42 0 chr1 74165101 74165149 -208028515 - L2 LINE L2 -7 3265 3216 521 178 15 0 chr1 74165176 74165286 -208028378 - L1MD3 LINE L1 0 8042 7887 23 0 0 0 chr1 74165613 74165636 -208028028 + AT_rich Low_complexity Low_complexity 1 23 0 572 236 100 0 chr1 74165656 74165796 -208027868 - MIR SINE MIR -30 232 79 234 308 129 71 chr1 74167227 74167467 -208026197 + L2 LINE L2 3001 3254 -18 2358 70 7 10 chr1 74167868 74168168 -208025496 - AluSp SINE Alu -14 299 1 230 260 41 3 chr1 74169169 74169248 -208024416 + MIR SINE MIR 15 93 -115 435 106 15 0 chr1 74169431 74169497 -208024167 + MER116 DNA Mariner 2 68 -12 2118 66 0 4 chr1 74170452 74170711 -208022953 - AluY SINE Alu -17 294 37 21 89 0 0 chr1 74170760 74170816 -208022848 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr1 74171474 74171511 -208022153 + AT_rich Low_complexity Low_complexity 1 37 0 788 150 0 0 chr1 74171539 74171652 -208022012 - FRAM SINE Alu -8 168 56 232 294 263 10 chr1 74172033 74172227 -208021437 + MIR SINE MIR 3 245 -17 2151 127 7 0 chr1 74172884 74173184 -208020480 - AluSx SINE Alu -10 302 1 189 337 133 0 chr1 74173202 74173300 -208020364 - MIR SINE MIR -73 135 25 1776 159 23 16 chr1 74173446 74173755 -208019909 + AluSx SINE Alu 1 311 -1 249 338 39 13 chr1 74174182 74174336 -208019328 - MIR3 SINE MIR -16 192 35 389 271 149 41 chr1 74176041 74176476 -208017188 + L1ME4a LINE L1 4877 5358 -788 2552 69 0 0 chr1 74176508 74176811 -208016853 + AluY SINE Alu 1 303 -8 327 340 122 39 chr1 74176811 74177294 -208016370 + L1ME4a LINE L1 5390 5912 -209 816 244 190 17 chr1 74177826 74178178 -208015486 + L1MC4a LINE L1 5541 5953 -1855 2116 110 3 29 chr1 74178295 74178604 -208015060 - AluSx SINE Alu -11 301 1 313 327 53 13 chr1 74178833 74178983 -208014681 - MIR SINE MIR -23 239 84 2952 156 19 4 chr1 74179288 74179801 -208013863 + L1MB2 LINE L1 5651 6171 0 304 364 88 34 chr1 74181524 74181763 -208011901 - L2 LINE L2 -379 2935 2684 318 296 217 34 chr1 74182308 74182663 -208011001 + L1ME4a LINE L1 5584 6003 -118 2255 78 3 3 chr1 74182694 74182987 -208010677 + AluSc SINE Alu 1 293 -16 260 276 32 65 chr1 74183450 74183573 -208010091 + MIR3 SINE MIR 88 206 -2 2553 52 3 0 chr1 74184215 74184521 -208009143 - AluY SINE Alu -3 308 2 227 303 61 50 chr1 74184857 74184956 -208008708 + MIR SINE MIR 36 135 -127 791 203 40 40 chr1 74185412 74185614 -208008050 - MIR SINE MIR -59 203 2 453 278 85 24 chr1 74185782 74185994 -208007670 - MIR SINE MIR -10 252 28 309 323 94 26 chr1 74186326 74186518 -208007146 - L2 LINE L2 -43 3229 3025 1834 144 0 61 chr1 74186570 74186713 -208006951 + AluJo SINE Alu 1 116 -196 2423 92 0 0 chr1 74186713 74187018 -208006646 + AluSx SINE Alu 1 305 -7 1834 144 0 61 chr1 74187018 74187187 -208006477 + AluJo SINE Alu 116 294 -18 1126 103 4 172 chr1 74187317 74187579 -208006085 - MER20 DNA MER1_type 0 219 2 246 317 74 53 chr1 74187606 74187849 -208005815 - L2 LINE L2 -665 2649 2402 1672 149 36 33 chr1 74187917 74188219 -208005445 + AluJo SINE Alu 1 303 -9 2223 114 0 7 chr1 74188220 74188528 -208005136 + AluSq SINE Alu 1 306 -7 2000 106 13 58 chr1 74188529 74188840 -208004824 + AluSx SINE Alu 1 297 -15 1098 147 114 0 chr1 74189430 74189614 -208004050 - AluJb SINE Alu -21 291 87 2102 128 0 7 chr1 74189626 74189924 -208003740 - AluSx SINE Alu -16 296 1 381 125 0 0 chr1 74190053 74190109 -208003555 + Alu SINE Alu 242 297 -5 2050 149 0 0 chr1 74190572 74190868 -208002796 + AluJb SINE Alu 1 296 -16 22 35 0 0 chr1 74190870 74190899 -208002765 + AT_rich Low_complexity Low_complexity 1 29 0 1782 158 7 4 chr1 74190904 74191183 -208002481 + AluJo SINE Alu 1 280 -32 969 66 22 44 chr1 74191185 74191368 -208002296 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 297 97 65 0 chr1 74191371 74191433 -208002231 + GA-rich Low_complexity Low_complexity 5 70 0 204 125 0 0 chr1 74191687 74191719 -208001945 + (A)n Simple_repeat Simple_repeat 1 32 0 352 295 67 62 chr1 74192376 74192569 -208001095 + MIR SINE MIR 13 206 -56 835 263 28 20 chr1 74192640 74192895 -208000769 - LTR16B LTR ERVL -4 460 204 1204 143 6 0 chr1 74192919 74193150 -208000514 - AluSp SINE Alu 0 313 125 931 200 24 0 chr1 74193152 74193322 -208000342 - FAM SINE Alu -8 41 1 579 273 85 0 chr1 74193325 74193490 -208000174 - LTR16B LTR ERVL -285 179 1 1150 322 66 37 chr1 74193667 74194391 -207999273 - HERV16 LTR ERVL -461 5303 4559 1797 310 17 10 chr1 74194429 74195007 -207998657 - HERV16 LTR ERVL -3437 1559 978 1830 151 3 11 chr1 74195204 74195517 -207998147 - AluJo SINE Alu 0 311 1 1102 106 118 0 chr1 74195520 74195690 -207997974 - AluY SINE Alu -16 295 106 1610 188 19 29 chr1 74195885 74196199 -207997465 + AluJo SINE Alu 1 311 -1 242 208 21 0 chr1 74196317 74196365 -207997299 - L2 LINE L2 -8 3264 3216 252 200 0 83 chr1 74196803 74196863 -207996801 - L2 LINE L2 -4 3309 3255 3529 34 2 7 chr1 74197344 74197756 -207995908 - L1PA4 LINE L1 -1 6154 5745 21 0 0 0 chr1 74198341 74198362 -207995302 + AT_rich Low_complexity Low_complexity 1 21 0 193 368 47 19 chr1 74198518 74198624 -207995040 - MIR SINE MIR -151 111 3 239 269 0 0 chr1 74198760 74198812 -207994852 + MIR SINE MIR 87 138 -70 414 85 0 0 chr1 74198855 74198914 -207994750 + (CA)n Simple_repeat Simple_repeat 2 60 0 322 322 61 15 chr1 74199405 74199542 -207994122 + MIR SINE MIR 23 164 -61 205 224 69 17 chr1 74200180 74200238 -207993426 - MIR SINE MIR -139 123 63 486 191 21 9 chr1 74200895 74201025 -207992639 + L1PB4 LINE L1 5876 5976 -180 1243 209 124 10 chr1 74201152 74201458 -207992206 + MER58B DNA MER1_type 1 341 0 730 251 128 46 chr1 74201627 74201954 -207991710 + L2 LINE L2 2921 3274 -39 256 303 161 7 chr1 74202503 74202658 -207991006 + L2 LINE L2 2705 2883 -431 1225 37 0 0 chr1 74202777 74202911 -207990753 + AluY SINE Alu 1 134 -177 2350 64 0 0 chr1 74202911 74203206 -207990458 + AluY SINE Alu 1 295 -16 1701 185 3 7 chr1 74205193 74205490 -207988174 + AluJo SINE Alu 1 296 -16 371 232 162 0 chr1 74205551 74205650 -207988014 - MIR SINE MIR -71 191 77 316 329 54 32 chr1 74206784 74207064 -207986600 + L2 LINE L2 2804 3089 -183 305 214 154 51 chr1 74207382 74207499 -207986165 + L2 LINE L2 3184 3312 -1 2179 113 0 13 chr1 74208034 74208343 -207985321 + AluSx SINE Alu 1 305 -7 1125 130 43 58 chr1 74209052 74209259 -207984405 - MER20 DNA MER1_type 0 219 16 344 244 123 121 chr1 74211345 74211805 -207981859 + L1M2 LINE L1 683 1060 -5789 204 40 0 0 chr1 74211805 74211830 -207981834 + (CCCCG)n Simple_repeat Simple_repeat 2 26 0 344 244 123 121 chr1 74211830 74212005 -207981659 + L1M2 LINE L1 1060 1233 -5616 363 344 99 12 chr1 74212484 74212737 -207980927 + L2 LINE L2 2482 2756 -558 240 250 75 12 chr1 74213186 74213266 -207980398 + MIR SINE MIR 116 200 -62 2150 118 3 3 chr1 74216494 74216791 -207976873 - AluSq SINE Alu -16 297 1 1538 132 93 12 chr1 74216995 74217252 -207976412 + AluJo SINE Alu 1 278 -34 314 177 16 0 chr1 74217282 74217344 -207976320 + MIR SINE MIR 200 262 0 412 291 160 10 chr1 74218375 74218416 -207975248 - MIR SINE MIR -13 249 216 820 291 9 14 chr1 74218416 74218626 -207975038 - MER63A DNA MER1_type -1 209 1 412 291 160 10 chr1 74218626 74218790 -207974874 - MIR SINE MIR -46 216 13 453 242 39 20 chr1 74218821 74218974 -207974690 + L1M4 LINE L1 7 162 -6380 1681 178 0 20 chr1 74218992 74219284 -207974380 + AluJo SINE Alu 9 294 -18 346 205 7 42 chr1 74219287 74219405 -207974259 + L1MC4 LINE L1 2209 7201 -1339 2240 96 0 0 chr1 74219426 74219749 -207973915 + AluSg SINE Alu 1 323 0 1722 221 82 128 chr1 74219921 74220403 -207973261 + L1M4 LINE L1 350 853 -5689 1915 133 21 4 chr1 74220403 74220706 -207972958 + AluSx SINE Alu 1 308 0 1722 221 82 128 chr1 74220706 74221017 -207972647 + L1M4 LINE L1 853 1085 -5457 2202 107 10 3 chr1 74221017 74221325 -207972339 + AluSx SINE Alu 1 310 -2 1722 221 82 128 chr1 74221325 74221597 -207972067 + L1M4 LINE L1 1085 1368 -5174 1618 163 35 24 chr1 74221598 74221887 -207971777 - MLT1B LTR MaLR 0 390 99 2141 209 78 38 chr1 74221941 74222477 -207971187 + L1 LINE L1 4088 4654 -1492 2021 136 3 0 chr1 74222477 74222778 -207970886 + AluSx SINE Alu 1 302 -10 2141 209 78 38 chr1 74222778 74222868 -207970796 + L1 LINE L1 4654 4739 -1407 2352 74 0 29 chr1 74222986 74223297 -207970367 + AluY SINE Alu 1 302 -9 420 287 162 0 chr1 74223623 74223839 -207969825 + MIR SINE MIR 4 254 -8 23 0 0 0 chr1 74223991 74224014 -207969650 + AT_rich Low_complexity Low_complexity 1 23 0 2230 113 3 3 chr1 74224014 74224325 -207969339 - AluSx SINE Alu 0 312 2 1918 168 0 0 chr1 74224331 74224617 -207969047 - AluJb SINE Alu -23 289 4 719 196 13 8 chr1 74224754 74225088 -207968576 - MSTD LTR MaLR 0 396 1 196 400 0 11 chr1 74225132 74225222 -207968442 + MIR SINE MIR 20 108 -100 1775 166 0 19 chr1 74226114 74226422 -207967242 - AluJb SINE Alu -10 302 1 315 254 169 7 chr1 74227015 74227157 -207966507 + Charlie8 DNA MER1_type 2 166 -2251 699 316 45 58 chr1 74227214 74227730 -207965934 + L1MEd LINE L1 329 837 -5282 446 292 76 16 chr1 74227741 74227926 -207965738 - L2 LINE L2 -13 3300 3105 417 226 128 30 chr1 74227954 74228118 -207965546 - L2 LINE L2 -3110 204 25 831 236 50 38 chr1 74228311 74228685 -207964979 + L1MEd LINE L1 872 1209 -4910 2420 102 60 26 chr1 74228960 74229312 -207964352 + THE1B LTR MaLR 1 364 0 1999 147 10 0 chr1 74229835 74230134 -207963530 + AluJo SINE Alu 1 302 -10 180 296 0 0 chr1 74230278 74230322 -207963342 + L2 LINE L2 3265 3308 -5 682 112 0 0 chr1 74230373 74230462 -207963202 - AluSc SINE Alu -14 295 207 1843 153 10 3 chr1 74230575 74230875 -207962789 + AluJo SINE Alu 1 302 -10 180 296 0 0 chr1 74231019 74231063 -207962601 + L2 LINE L2 3265 3308 -5 1851 104 8 0 chr1 74231114 74231363 -207962301 - AluSc SINE Alu -14 295 45 427 252 86 54 chr1 74231399 74231477 -207962187 + L1ME4a LINE L1 5612 5686 -435 967 164 25 13 chr1 74231477 74231636 -207962028 + FRAM SINE Alu 1 161 -5 427 252 86 54 chr1 74231636 74231779 -207961885 + L1ME4a LINE L1 5686 5840 -281 262 95 48 0 chr1 74231848 74231890 -207961774 + L1ME4a LINE L1 5984 6027 -94 420 116 0 0 chr1 74232000 74232069 -207961595 - Alu SINE Alu -9 303 235 356 281 12 6 chr1 74232657 74232817 -207960847 + (TG)n Simple_repeat Simple_repeat 1 161 0 238 219 27 0 chr1 74232832 74232905 -207960759 + (TG)n Simple_repeat Simple_repeat 1 75 0 303 256 111 0 chr1 74233234 74233324 -207960340 + L1MC4 LINE L1 6604 6703 -1339 340 274 104 35 chr1 74233480 74233709 -207959955 + MIR SINE MIR 8 247 -15 180 0 0 0 chr1 74234133 74234153 -207959511 + (T)n Simple_repeat Simple_repeat 1 20 0 428 270 79 24 chr1 74234699 74234825 -207958839 - MIR3 SINE MIR -51 157 25 2232 112 3 0 chr1 74235054 74235358 -207958306 - AluSx SINE Alu -7 305 1 205 138 0 0 chr1 74235389 74235418 -207958246 + (GGA)n Simple_repeat Simple_repeat 2 30 0 1652 102 0 0 chr1 74236260 74236476 -207957188 + AluSq SINE Alu 82 297 -16 1887 151 31 6 chr1 74236487 74236806 -207956858 + L1MA5 LINE L1 5972 6298 -2 578 239 28 7 chr1 74236845 74236987 -207956677 + L1M4 LINE L1 4562 4706 -1440 24 67 0 0 chr1 74237031 74237076 -207956588 + AT_rich Low_complexity Low_complexity 1 45 0 1561 198 52 0 chr1 74237472 74237760 -207955904 - AluJo SINE Alu -9 303 1 2170 82 0 21 chr1 74238550 74238863 -207954801 - AluSp SINE Alu 0 313 18 2132 137 3 0 chr1 74238863 74239162 -207954502 - AluSx SINE Alu -12 300 1 271 395 15 25 chr1 74239353 74239553 -207954111 - L2 LINE L2 -353 2961 2764 760 198 8 0 chr1 74239558 74239684 -207953980 - FLAM_C SINE Alu -2 131 5 321 185 0 0 chr1 74239731 74239796 -207953868 + CT-rich Low_complexity Low_complexity 1 65 0 1759 169 13 7 chr1 74239796 74240103 -207953561 - AluJo SINE Alu -3 309 1 370 280 44 19 chr1 74240127 74240302 -207953362 + L1MB1 LINE L1 5643 5826 -342 * 425 274 90 48 chr1 74240173 74240483 -207953181 + L1MC4a LINE L1 5694 6017 -104 949 210 23 6 chr1 74240758 74240987 -207952677 - MIR SINE MIR -21 241 6 2347 158 99 116 chr1 74241213 74241790 -207951874 + MLT1F1 LTR MaLR 1 567 0 1205 173 48 75 chr1 74241816 74242111 -207951553 + AluJo SINE Alu 1 287 -25 1657 161 95 0 chr1 74242312 74242586 -207951078 + AluJb SINE Alu 1 300 -12 1096 146 0 52 chr1 74243758 74243930 -207949734 + FRAM SINE Alu 1 180 -132 2396 79 0 10 chr1 74243930 74244234 -207949430 + AluY SINE Alu 1 301 -10 2278 104 7 3 chr1 74244234 74244542 -207949122 + AluSx SINE Alu 1 309 -3 1096 146 0 52 chr1 74244542 74244560 -207949104 + FRAM SINE Alu 159 176 0 1012 293 60 58 chr1 74244640 74245450 -207948214 + L1MEd LINE L1 444 1255 -4864 261 232 18 27 chr1 74245491 74245603 -207948061 + GA-rich Low_complexity Low_complexity 5 115 0 587 305 9 82 chr1 74245712 74245804 -207947860 + L1MEd LINE L1 1428 1525 -4785 2488 47 0 3 chr1 74245804 74246104 -207947560 - AluY SINE Alu -12 299 1 587 305 9 82 chr1 74246104 74246339 -207947325 + L1MEd LINE L1 1525 1731 -4579 217 307 0 0 chr1 74246588 74246663 -207947001 + A-rich Low_complexity Low_complexity 1 75 0 2265 250 98 75 chr1 74246711 74246889 -207946775 + L1MEd LINE L1 2119 2291 -3838 3036 187 16 33 chr1 74246889 74247459 -207946205 + L1MB4 LINE L1 5571 6149 -31 1755 146 69 0 chr1 74247459 74247734 -207945930 + AluJb SINE Alu 1 294 -18 2298 101 3 0 chr1 74247736 74248042 -207945622 + AluSx SINE Alu 1 307 -5 3036 187 16 33 chr1 74248042 74248082 -207945582 + L1MB4 LINE L1 6150 6174 -6 2265 250 98 75 chr1 74248082 74248303 -207945361 + L1MEd LINE L1 2291 2505 -3624 2191 117 3 10 chr1 74248303 74248610 -207945054 + AluSx SINE Alu 1 305 -7 2265 250 98 75 chr1 74248610 74248939 -207944725 + L1MEd LINE L1 2505 2825 -3304 2103 103 24 3 chr1 74248939 74249230 -207944434 - AluSq SINE Alu -16 297 1 2265 250 98 75 chr1 74249230 74249582 -207944082 + L1MEd LINE L1 2825 3167 -2962 225 0 0 0 chr1 74249582 74249607 -207944057 + (GA)n Simple_repeat Simple_repeat 2 26 0 270 0 0 0 chr1 74249607 74249637 -207944027 + (CA)n Simple_repeat Simple_repeat 2 31 0 2265 250 98 75 chr1 74249637 74249848 -207943816 + L1MEd LINE L1 3167 3372 -2757 2460 58 0 6 chr1 74249848 74250161 -207943503 + AluY SINE Alu 1 311 0 2265 250 98 75 chr1 74250161 74250733 -207942931 + L1MEd LINE L1 3372 4030 -2099 387 277 14 81 chr1 74250727 74250755 -207942909 - L1ME LINE L1 -534 5636 5608 * 2182 136 3 0 chr1 74250755 74251064 -207942600 + AluSx SINE Alu 1 310 -2 2334 102 3 0 chr1 74251064 74251369 -207942295 + AluSq SINE Alu 1 306 -7 387 277 14 81 chr1 74251369 74251487 -207942177 - L1ME LINE L1 -560 5610 5499 337 274 21 0 chr1 74251502 74251597 -207942067 + L1ME3A LINE L1 5647 5743 -427 356 295 45 0 chr1 74251603 74251715 -207941949 + L1ME3A LINE L1 6027 6143 -27 1365 302 63 19 chr1 74251840 74252313 -207941351 - LTR33 LTR ERVL -2 519 26 367 223 46 46 chr1 74252434 74252564 -207941100 - HERVL LTR ERVL -312 5342 5213 307 330 54 18 chr1 74252920 74253032 -207940632 - MIR SINE MIR -60 148 33 23 0 0 0 chr1 74253419 74253442 -207940222 + AT_rich Low_complexity Low_complexity 1 23 0 394 113 0 16 chr1 74254111 74254173 -207939491 - U6 snRNA snRNA -23 84 24 3370 184 52 64 chr1 74254193 74254225 -207939439 - L1ME2 LINE L1 -35 6129 6098 1422 196 34 21 chr1 74254225 74254516 -207939148 - AluJo SINE Alu -17 295 1 3370 184 52 64 chr1 74254516 74254647 -207939017 - L1ME2 LINE L1 -66 6098 5967 2005 98 0 0 chr1 74254647 74254903 -207938761 - AluY SINE Alu -55 256 1 3370 184 52 64 chr1 74254903 74255607 -207938057 - L1ME2 LINE L1 -197 5967 5271 663 281 72 89 chr1 74255638 74255815 -207937849 - MLT1K LTR MaLR 0 588 410 2226 116 0 0 chr1 74255815 74256108 -207937556 + AluSq SINE Alu 1 293 -20 663 281 72 89 chr1 74256108 74256527 -207937137 - MLT1K LTR MaLR -178 410 2 346 261 93 93 chr1 74256667 74256786 -207936878 + MIR SINE MIR 8 129 -133 2025 163 0 3 chr1 74256786 74257099 -207936565 - AluJb SINE Alu 0 312 1 346 261 93 93 chr1 74257099 74257205 -207936459 + MIR SINE MIR 128 233 -29 1800 125 61 7 chr1 74257803 74258083 -207935581 + AluSx SINE Alu 1 295 -17 1860 113 46 66 chr1 74258326 74258628 -207935036 - AluSx SINE Alu -16 296 1 1013 284 55 38 chr1 74258762 74259184 -207934480 - LTR16B LTR ERVL -2 462 34 1023 276 80 17 chr1 74259370 74259732 -207933932 + L2 LINE L2 2924 3308 -5 381 131 0 0 chr1 74259732 74259793 -207933871 + (GGGA)n Simple_repeat Simple_repeat 4 64 0 400 334 112 6 chr1 74259971 74260164 -207933500 - MIR SINE MIR -13 249 40 2040 158 0 10 chr1 74260367 74260678 -207932986 - AluJo SINE Alu -4 308 1 3814 99 33 6 chr1 74260705 74261248 -207932416 + L1PA13 LINE L1 5606 6163 0 2066 170 38 27 chr1 74261252 74261622 -207932042 + MLT1A2 LTR MaLR 1 374 0 2794 201 90 58 chr1 74261667 74261815 -207931849 + L1MC4 LINE L1 7095 7237 -805 2395 81 3 0 chr1 74261815 74262110 -207931554 - AluSx SINE Alu -16 296 1 2794 201 90 58 chr1 74262110 74262151 -207931513 + L1MC4 LINE L1 7237 7275 -767 1705 186 3 6 chr1 74262151 74262462 -207931202 + AluJb SINE Alu 1 310 -2 2794 201 90 58 chr1 74262462 74263136 -207930528 + L1MC4 LINE L1 7275 7987 -55 2394 109 0 0 chr1 74263231 74263543 -207930121 - AluSx SINE Alu 0 312 1 186 71 0 0 chr1 74263782 74263810 -207929854 + (CAA)n Simple_repeat Simple_repeat 2 29 0 519 269 188 44 chr1 74264136 74264456 -207929208 + MLT1J LTR MaLR 1 366 -145 1070 186 75 124 chr1 74264456 74264585 -207929079 - AluJo SINE Alu -10 292 158 37 23 0 0 chr1 74264585 74264629 -207929035 + AT_rich Low_complexity Low_complexity 1 44 0 1070 186 75 124 chr1 74264629 74264763 -207928901 - AluJo SINE Alu -144 158 1 803 159 0 23 chr1 74264886 74265018 -207928646 + FLAM_C SINE Alu 5 133 0 401 320 148 15 chr1 74265068 74265271 -207928393 + MIR SINE MIR 21 250 -12 2267 98 0 3 chr1 74266049 74266377 -207927287 + AluSq SINE Alu 1 327 0 301 330 67 3 chr1 74266708 74266848 -207926816 + MIR SINE MIR 20 166 -62 2269 92 14 3 chr1 74267063 74267358 -207926306 + AluSg SINE Alu 1 298 -12 576 153 10 0 chr1 74267366 74267464 -207926200 + L1MB4 LINE L1 6036 6134 -46 1336 197 0 17 chr1 74267471 74267710 -207925954 + AluJo SINE Alu 45 279 -33 379 294 145 1 chr1 74267942 74268096 -207925568 + L1ME LINE L1 5637 5815 -306 1840 171 3 22 chr1 74268181 74268497 -207925167 + AluJo SINE Alu 1 310 -2 815 120 30 30 chr1 74268583 74268716 -207924948 - FLAM_A SINE Alu 0 133 1 843 179 34 11 chr1 74268903 74269082 -207924582 + AluJo SINE Alu 47 229 -83 425 218 115 19 chr1 74269197 74269353 -207924311 + AluJb SINE Alu 130 300 -12 787 137 27 137 chr1 74269564 74269655 -207924009 + MER45A DNA AcHobo 16 79 -1502 2521 87 0 0 chr1 74269655 74269967 -207923697 - AluSp SINE Alu -1 312 1 787 137 27 137 chr1 74269967 74270058 -207923606 + MER45A DNA AcHobo 79 178 0 2187 118 3 0 chr1 74270109 74270406 -207923258 - AluSx SINE Alu -14 298 1 303 49 0 0 chr1 74270407 74270448 -207923216 + (TG)n Simple_repeat Simple_repeat 2 42 0 833 137 0 0 chr1 74270448 74270565 -207923099 - FLAM_C SINE Alu -26 117 1 219 316 174 0 chr1 74270676 74270774 -207922890 - L3 LINE CR1 -425 1152 1038 604 315 91 4 chr1 74270826 74271067 -207922597 - MIR SINE MIR 0 262 1 1791 182 114 70 chr1 74271307 74271407 -207922257 - MLT1D LTR MaLR 0 505 411 2132 132 0 0 chr1 74271407 74271703 -207921961 + AluSq SINE Alu 6 301 -12 1791 182 114 70 chr1 74271703 74272086 -207921578 - MLT1D LTR MaLR -94 411 1 472 306 59 45 chr1 74272200 74272422 -207921242 - L2 LINE L2 -4 3268 3044 235 203 0 78 chr1 74273176 74273226 -207920438 - MER2 DNA MER2_type -19 326 280 2260 102 0 13 chr1 74273226 74273540 -207920124 + AluSq SINE Alu 1 310 -3 235 203 0 78 chr1 74273540 74273553 -207920111 - MER2 DNA MER2_type -65 280 268 1242 173 10 0 chr1 74273614 74273822 -207919842 - MER2 DNA MER2_type -135 210 1 309 26 0 0 chr1 74273877 74273915 -207919749 + (CA)n Simple_repeat Simple_repeat 2 39 0 194 289 100 0 chr1 74274274 74274364 -207919300 - L3 LINE CR1 -92 1485 1387 326 239 22 11 chr1 74274707 74274799 -207918865 - MIR SINE MIR -102 160 68 704 198 10 84 chr1 74274881 74275000 -207918664 + L1MD2 LINE L1 5803 5827 -339 2005 149 3 19 chr1 74275000 74275173 -207918491 - AluSx SINE Alu -8 304 137 2314 94 3 25 chr1 74275173 74275492 -207918172 - AluSx SINE Alu 0 312 1 2005 149 3 19 chr1 74275492 74275627 -207918037 - AluSx SINE Alu -175 137 1 704 198 10 84 chr1 74275627 74275718 -207917946 + L1MD2 LINE L1 5827 5923 -243 184 256 124 83 chr1 74276302 74276423 -207917241 + MIR SINE MIR 81 206 -56 497 237 105 0 chr1 74277014 74277166 -207916498 + MIR SINE MIR 80 247 -15 547 333 75 5 chr1 74277328 74277541 -207916123 + MIR SINE MIR 23 250 -12 327 325 128 26 chr1 74277952 74278186 -207915478 + L3 LINE CR1 1310 1567 -10 1001 96 0 0 chr1 74278188 74278313 -207915351 - AluSq/x SINE Alu -179 133 9 1402 197 51 0 chr1 74278384 74278658 -207915006 + AluJo SINE Alu 2 289 -23 211 225 113 12 chr1 74278757 74278837 -207914827 + MIR SINE MIR 89 176 -86 2487 57 0 3 chr1 74278908 74279204 -207914460 + AluY SINE Alu 1 295 -16 1867 161 3 3 chr1 74280611 74280916 -207912748 + AluJo SINE Alu 1 305 -7 260 340 181 7 chr1 74281648 74281930 -207911734 - L2 LINE L2 -34 3279 2949 297 281 14 79 chr1 74282052 74282191 -207911473 - L2 LINE L2 -554 2760 2631 266 274 217 40 chr1 74282291 74282466 -207911198 + MIR SINE MIR 48 253 -9 277 319 0 0 chr1 74282980 74283052 -207910612 - MER117 DNA MER1_type -73 124 53 335 264 0 0 chr1 74283640 74283712 -207909952 - MER117 DNA MER1_type -73 124 53 1349 146 115 31 chr1 74284107 74284367 -207909297 - AluJo SINE Alu -30 282 1 2252 93 3 13 chr1 74284527 74284662 -207909002 + AluSx SINE Alu 1 136 -176 2290 40 0 143 chr1 74284662 74285013 -207908651 + AluY SINE Alu 1 301 -10 2252 93 3 13 chr1 74285013 74285188 -207908476 + AluSx SINE Alu 136 308 -4 2186 112 7 3 chr1 74285195 74285499 -207908165 + AluSx SINE Alu 1 305 -7 1280 145 153 21 chr1 74285708 74285950 -207907714 + AluJb SINE Alu 9 282 -30 3246 141 68 4 chr1 74287488 74288036 -207905628 - L1MB3 LINE L1 -4 6179 5597 1879 154 7 7 chr1 74289120 74289425 -207904239 + AluSx SINE Alu 1 305 -7 1442 180 47 0 chr1 74289898 74290153 -207903511 + AluJb SINE Alu 1 267 -45 223 391 35 9 chr1 74291342 74291457 -207902207 - L2 LINE L2 -2 3270 3153 212 284 74 12 chr1 74291469 74291550 -207902114 - MIR SINE MIR -21 241 156 191 329 44 51 chr1 74291607 74291744 -207901920 - MIR3 SINE MIR -62 146 11 1346 180 109 0 chr1 74293616 74293872 -207899792 + AluJb SINE Alu 1 284 -28 223 291 243 10 chr1 74295381 74295484 -207898180 + MIR3 SINE MIR 55 181 -27 2252 118 0 3 chr1 74296001 74296314 -207897350 + AluSx SINE Alu 1 312 0 1382 153 138 17 chr1 74296360 74296707 -207896957 - MER3 DNA MER1_type 0 2620 2232 582 139 69 0 chr1 74296710 74296811 -207896853 - MER3 DNA MER1_type -58 151 44 21 36 0 0 chr1 74299139 74299167 -207894497 + GC_rich Low_complexity Low_complexity 1 28 0 248 162 15 44 chr1 74299207 74299275 -207894389 + CT-rich Low_complexity Low_complexity 1 66 0 180 0 0 0 chr1 74299594 74299614 -207894050 + (A)n Simple_repeat Simple_repeat 1 20 0 189 175 0 0 chr1 74299682 74299722 -207893942 + (TG)n Simple_repeat Simple_repeat 1 40 0 246 355 43 0 chr1 74300556 74300697 -207892967 - MIR3 SINE MIR -21 187 41 201 341 118 0 chr1 74300886 74300971 -207892693 + L2 LINE L2 3138 3232 -40 566 254 100 50 chr1 74302023 74302263 -207891401 + MIR SINE MIR 10 261 -1 261 364 64 0 chr1 74302826 74302936 -207890728 - L2 LINE L2 -5 3267 3151 219 114 0 0 chr1 74303084 74303119 -207890545 + (TA)n Simple_repeat Simple_repeat 1 35 0 207 0 0 0 chr1 74303123 74303146 -207890518 + (T)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 74303259 74303280 -207890384 + AT_rich Low_complexity Low_complexity 1 21 0 2272 82 21 0 chr1 74303325 74303616 -207890048 + AluSc SINE Alu 1 297 -12 284 351 129 32 chr1 74303705 74303953 -207889711 + L2 LINE L2 2581 2852 -462 1063 157 27 5 chr1 74303964 74304149 -207889515 + MER53 DNA DNA 1 189 0 857 114 0 0 chr1 74304873 74304996 -207888668 + AluSg/x SINE Alu 190 312 0 650 213 75 6 chr1 74305017 74305191 -207888473 + MER112 DNA MER1_type 71 256 -4 183 80 0 0 chr1 74305746 74305771 -207887893 + (TA)n Simple_repeat Simple_repeat 1 25 0 2698 244 82 41 chr1 74305934 74306830 -207886834 - L2 LINE L2 -1414 1900 969 375 258 40 32 chr1 74307003 74307127 -207886537 + L2 LINE L2 3188 3312 -1 192 324 14 0 chr1 74307134 74307205 -207886459 - L3 LINE CR1 -400 1177 1106 1836 165 3 13 chr1 74307414 74307729 -207885935 - AluJb SINE Alu 0 312 1 926 207 137 4 chr1 74307732 74307988 -207885676 - L1M4 LINE L1 -816 5330 5041 1435 192 39 24 chr1 74307989 74308138 -207885526 - L1M4 LINE L1 -1160 4986 4841 1844 121 18 21 chr1 74308138 74308450 -207885214 + AluSx SINE Alu 1 311 0 1435 192 39 24 chr1 74308450 74308637 -207885027 - L1M4 LINE L1 -1305 4841 4644 828 160 50 21 chr1 74308916 74309096 -207884568 - L1P4 LINE L1 -594 5571 5390 960 94 0 16 chr1 74309096 74309223 -207884441 - AluSg/x SINE Alu -21 289 165 1350 158 136 38 chr1 74309523 74309788 -207883876 + AluJo SINE Alu 1 291 -21 826 164 0 0 chr1 74309800 74309922 -207883742 + FLAM_A SINE Alu 1 122 -11 1635 162 50 23 chr1 74310035 74310338 -207883326 - AluJo SINE Alu -1 311 1 694 179 100 11 chr1 74310341 74310531 -207883133 - L1M4 LINE L1 -1559 4587 4381 535 307 75 48 chr1 74310973 74311266 -207882398 - L3 LINE CR1 -759 818 518 * 556 268 18 18 chr1 74311242 74311406 -207882258 + MIR SINE MIR 95 258 -4 952 144 0 0 chr1 74311406 74311572 -207882092 + FLAM_C SINE Alu 2 167 0 525 307 52 17 chr1 74311596 74311827 -207881837 + MIR SINE MIR 21 259 -3 246 288 15 0 chr1 74311889 74311955 -207881709 - L3 LINE CR1 -1124 453 387 2127 128 3 13 chr1 74311996 74312309 -207881355 - AluSg SINE Alu 0 310 1 23 33 0 0 chr1 74312358 74312388 -207881276 + AT_rich Low_complexity Low_complexity 1 30 0 2584 40 0 0 chr1 74313004 74313305 -207880359 + AluY SINE Alu 1 301 -10 269 195 0 0 chr1 74313390 74313431 -207880233 + L2 LINE L2 3217 3257 -15 195 42 0 0 chr1 74314389 74314413 -207879251 + (CA)n Simple_repeat Simple_repeat 1 24 0 657 341 75 27 chr1 74314444 74314710 -207878954 - LTR16B LTR ERVL -32 418 99 1798 164 26 10 chr1 74315058 74315363 -207878301 + AluJo SINE Alu 1 310 -2 229 256 0 0 chr1 74315363 74315406 -207878258 + polypurine Low_complexity Low_complexity 2 44 0 1579 175 91 0 chr1 74315602 74315887 -207877777 - AluJb SINE Alu -1 311 1 * 1998 134 7 7 chr1 74315887 74316184 -207877480 - AluSx SINE Alu -15 297 1 214 279 0 0 chr1 74316757 74316800 -207876864 - L2 LINE L2 -94 3178 3136 778 173 0 16 chr1 74316830 74316957 -207876707 + AluSq/x SINE Alu 2 126 -186 1786 145 36 33 chr1 74316989 74317292 -207876372 + AluJb SINE Alu 5 308 -4 2307 128 0 0 chr1 74317579 74317891 -207875773 - AluSx SINE Alu 0 312 1 2156 121 39 55 chr1 74318182 74318563 -207875101 + MLT1B LTR MaLR 14 388 -2 241 369 0 27 chr1 74318657 74318766 -207874898 - L2 LINE L2 -553 2761 2656 2265 109 48 34 chr1 74318766 74319124 -207874540 + THE1B LTR MaLR 1 363 -1 241 369 0 27 chr1 74319124 74319163 -207874501 - L2 LINE L2 -658 2656 2617 800 202 6 17 chr1 74319440 74319618 -207874046 + FRAM SINE Alu 1 173 -3 187 414 9 0 chr1 74319744 74319860 -207873804 + MIR SINE MIR 30 146 -62 238 148 180 0 chr1 74319947 74320008 -207873656 - MIR SINE MIR -73 189 118 202 292 28 28 chr1 74320579 74320651 -207873013 - L2 LINE L2 0 3272 3201 2529 75 0 3 chr1 74320663 74320970 -207872694 + AluSq SINE Alu 3 308 -5 1935 156 0 0 chr1 74320987 74321275 -207872389 + AluJb SINE Alu 2 289 -23 186 43 0 0 chr1 74321286 74321309 -207872355 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 219 336 89 55 chr1 74321321 74321613 -207872051 - L2 LINE L2 -81 3191 2890 303 292 35 26 chr1 74321789 74321902 -207871762 - MIR SINE MIR -65 143 30 1805 178 0 7 chr1 74322164 74322462 -207871202 - AluJo SINE Alu -15 297 2 188 245 0 20 chr1 74322488 74322537 -207871127 + MIR SINE MIR 104 151 -111 519 82 14 0 chr1 74322773 74322846 -207870818 + MADE1 DNA Mariner 1 74 -6 687 347 13 0 chr1 74322871 74323110 -207870554 + LTR16C LTR ERVL 1 242 -249 1141 116 56 46 chr1 74323160 74323376 -207870288 - L1MB3 LINE L1 -3 6180 5963 1112 241 0 0 chr1 74323945 74324157 -207869507 + LTR16C LTR ERVL 278 489 -2 323 224 0 0 chr1 74324265 74324323 -207869341 - L2 LINE L2 -7 3306 3249 262 227 68 23 chr1 74324611 74324699 -207868965 - MIR3 SINE MIR -19 189 98 717 216 56 39 chr1 74324753 74324985 -207868679 - MER106A DNA MER1_type 0 236 1 7511 175 14 14 chr1 74325142 74326664 -207867000 - L1 LINE L1 -853 5995 4475 1195 209 0 13 chr1 74326677 74326912 -207866752 - AluJo SINE Alu -18 294 63 2902 199 53 89 chr1 74327025 74327296 -207866368 - L1 LINE L1 -2358 4490 4211 2409 82 0 31 chr1 74327296 74327615 -207866049 - AluY SINE Alu -2 309 1 2902 199 53 89 chr1 74327615 74327941 -207865723 - L1 LINE L1 -2637 4211 3875 1076 159 0 0 chr1 74327941 74328098 -207865566 - AluJb SINE Alu -13 299 143 2902 199 53 89 chr1 74328098 74328207 -207865457 - L1 LINE L1 -2973 3875 3764 2167 150 0 0 chr1 74328207 74328514 -207865150 + AluSx SINE Alu 1 307 -5 2902 199 53 89 chr1 74328514 74328777 -207864887 - L1 LINE L1 -3084 3764 3493 2216 123 7 0 chr1 74328777 74329087 -207864577 + AluSx SINE Alu 1 312 0 2902 199 53 89 chr1 74329087 74329168 -207864496 - L1 LINE L1 -3355 3493 3411 2134 132 3 0 chr1 74329168 74329455 -207864209 + AluSx SINE Alu 1 288 -24 2902 199 53 89 chr1 74329455 74329795 -207863869 - L1 LINE L1 -3437 3411 3052 1015 205 77 13 chr1 74329807 74330041 -207863623 - AluJo SINE Alu -7 305 57 822 171 37 0 chr1 74330362 74330526 -207863138 - AluSx SINE Alu -118 194 25 2907 166 2 21 chr1 74330528 74330925 -207862739 - L1 LINE L1 -3901 2947 2573 1789 170 14 0 chr1 74330925 74331229 -207862435 + AluJo SINE Alu 1 308 0 2907 166 2 21 chr1 74331229 74331411 -207862253 - L1 LINE L1 -4275 2573 2389 1266 151 73 0 chr1 74331413 74331619 -207862045 + AluJb SINE Alu 86 306 -6 7005 217 46 41 chr1 74331621 74331953 -207861711 - L1 LINE L1 -4449 2400 2071 1335 216 0 66 chr1 74331953 74332133 -207861531 - AluJb SINE Alu -1 311 161 2185 107 10 0 chr1 74332133 74332424 -207861240 - AluSp SINE Alu -19 294 1 1335 216 0 66 chr1 74332424 74332576 -207861088 - AluJb SINE Alu -151 161 1 7005 217 46 41 chr1 74332576 74332668 -207860996 - L1 LINE L1 -4778 2071 1981 2342 101 0 7 chr1 74332668 74332976 -207860688 - AluSc SINE Alu -1 308 3 7005 217 46 41 chr1 74332976 74333002 -207860662 - L1 LINE L1 -4868 1981 1957 1733 159 17 17 chr1 74333002 74333297 -207860367 - AluSx SINE Alu -3 309 15 7005 217 46 41 chr1 74333297 74333372 -207860292 - L1 LINE L1 -4892 1957 1884 2341 109 0 0 chr1 74333372 74333683 -207859981 - AluY SINE Alu 0 311 1 7005 217 46 41 chr1 74333683 74334072 -207859592 - L1 LINE L1 -4965 1884 1498 2336 112 0 7 chr1 74334072 74334377 -207859287 - AluSx SINE Alu -9 303 1 7005 217 46 41 chr1 74334377 74335240 -207858424 - L1 LINE L1 -5351 1498 610 1841 228 18 26 chr1 74335274 74335402 -207858262 - L1 LINE L1 -6368 481 354 2330 107 3 0 chr1 74335402 74335700 -207857964 - AluSq SINE Alu -14 299 1 1841 228 18 26 chr1 74335700 74335961 -207857703 - L1 LINE L1 -6495 354 95 809 203 0 0 chr1 74335967 74336100 -207857564 - FLAM_A SINE Alu 0 133 1 704 254 114 0 chr1 74336121 74336341 -207857323 - MIR SINE MIR -5 257 13 286 368 75 0 chr1 74337072 74337178 -207856486 - L2 LINE L2 -38 3234 3121 2253 120 0 3 chr1 74337187 74337486 -207856178 + AluSx SINE Alu 1 298 -14 334 185 123 0 chr1 74337717 74337798 -207855866 - MER5A DNA MER1_type -95 94 4 1446 195 16 69 chr1 74338276 74338594 -207855070 + AluJo SINE Alu 2 302 0 306 73 0 0 chr1 74339081 74339122 -207854542 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1856 146 11 7 chr1 74339349 74339673 -207853991 - AluJo SINE Alu 0 325 1 759 153 147 7 chr1 74340007 74340157 -207853507 + AluJo SINE Alu 121 291 -21 247 274 189 33 chr1 74340165 74340318 -207853346 - L2 LINE L2 -2496 818 642 445 229 122 8 chr1 74340347 74340478 -207853186 - MIR SINE MIR -26 236 91 456 233 33 8 chr1 74340738 74340858 -207852806 + L2 LINE L2 3141 3263 -9 2065 141 6 6 chr1 74340867 74341179 -207852485 - AluJb SINE Alu 0 312 1 417 224 67 126 chr1 74341573 74341692 -207851972 - MIR SINE MIR -6 256 154 2355 91 0 0 chr1 74341692 74341988 -207851676 - AluY SINE Alu -15 296 1 417 224 67 126 chr1 74341988 74342091 -207851573 - MIR SINE MIR -108 154 47 497 125 0 0 chr1 74342103 74342175 -207851489 - MSTB LTR MaLR 0 426 355 222 143 24 0 chr1 74342188 74342230 -207851434 + GA-rich Low_complexity Low_complexity 4 46 0 2139 129 56 17 chr1 74342230 74342586 -207851078 - MSTB LTR MaLR -56 370 1 5315 155 44 0 chr1 74342586 74343452 -207850212 - MSTB-int LTR MaLR 0 1651 748 974 144 6 0 chr1 74343454 74343621 -207850043 - MSTB-int LTR MaLR -1483 168 1 2245 140 127 3 chr1 74343621 74344000 -207849664 - MSTB LTR MaLR 0 426 1 197 247 63 130 chr1 74344089 74344312 -207849352 + L3 LINE CR1 862 1069 -508 364 240 125 10 chr1 74344318 74344422 -207849242 - L2 LINE L2 0 3272 3157 235 273 124 41 chr1 74344433 74344554 -207849110 + L3 LINE CR1 1071 1201 -376 345 264 44 22 chr1 74344679 74344770 -207848894 + L3 LINE CR1 1409 1501 -76 191 281 18 0 chr1 74344910 74344967 -207848697 + L3 LINE CR1 1519 1576 -1 1785 156 0 49 chr1 74345351 74345497 -207848167 + AluJb SINE Alu 1 153 -159 2380 92 0 0 chr1 74345497 74345792 -207847872 + AluSg SINE Alu 1 295 -15 1785 156 0 49 chr1 74345792 74345973 -207847691 + AluJb SINE Alu 153 312 0 242 306 0 0 chr1 74346624 74346696 -207846968 + (TA)n Simple_repeat Simple_repeat 2 73 0 1497 172 0 63 chr1 74346821 74347124 -207846540 - AluJo SINE Alu -18 294 11 293 254 71 56 chr1 74347140 74347337 -207846327 - L1ME LINE L1 -301 5820 5621 289 262 36 12 chr1 74348025 74348109 -207845555 - L2 LINE L2 -6 3266 3181 2141 136 0 0 chr1 74348132 74348426 -207845238 + AluSg SINE Alu 1 294 -16 536 139 8 108 chr1 74348705 74348834 -207844830 + AluJo SINE Alu 19 134 -178 21 0 0 0 chr1 74348834 74348855 -207844809 + AT_rich Low_complexity Low_complexity 1 21 0 184 337 20 20 chr1 74348891 74348989 -207844675 - L2 LINE L2 -460 2854 2757 1188 150 37 0 chr1 74348997 74349184 -207844480 - AluSg/x SINE Alu -21 291 98 917 135 0 0 chr1 74349245 74349378 -207844286 + FLAM_C SINE Alu 1 133 0 724 340 88 10 chr1 74349398 74349889 -207843775 - L2 LINE L2 -585 2729 2201 777 64 71 57 chr1 74349890 74350030 -207843634 + AluSg/x SINE Alu 166 307 -3 895 275 84 33 chr1 74350264 74350631 -207843033 + L2 LINE L2 2924 3309 -4 239 374 0 0 chr1 74350643 74350758 -207842906 - L2 LINE L2 -1417 1897 1783 201 250 0 0 chr1 74351045 74351081 -207842583 - L2 LINE L2 -18 3254 3219 2204 95 0 0 chr1 74351149 74351432 -207842232 + AluSx SINE Alu 1 283 -29 207 0 0 0 chr1 74351435 74351458 -207842206 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2238 113 0 28 chr1 74351921 74352239 -207841425 - AluSx SINE Alu -3 309 1 776 239 82 60 chr1 74352288 74352367 -207841297 + Charlie2 DNA MER1_type 1 77 -2785 1986 198 8 6 chr1 74352367 74352731 -207840933 + MLT1A1 LTR MaLR 1 365 0 776 239 82 60 chr1 74352731 74352969 -207840695 + Charlie2 DNA MER1_type 77 325 -2537 749 165 38 13 chr1 74352971 74353129 -207840535 + Charlie2 DNA MER1_type 1856 2017 -845 2588 39 0 7 chr1 74353151 74353461 -207840203 - AluY SINE Alu -3 308 1 2333 95 0 7 chr1 74353461 74353766 -207839898 - AluSc SINE Alu -5 304 1 201 39 0 0 chr1 74353780 74353806 -207839858 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 21848 53 5 7 chr1 74353806 74357337 -207836327 - L1PA6 LINE L1 -13 6141 2611 1190 137 6 0 chr1 74357337 74357505 -207836159 + AluSg/x SINE Alu 129 297 -13 945 176 6 6 chr1 74357648 74357807 -207835857 + 7SLRNA srpRNA srpRNA 146 304 -16 2348 76 0 32 chr1 74357846 74358162 -207835502 + AluY SINE Alu 1 306 -5 619 228 47 0 chr1 74358163 74358334 -207835330 + Charlie2 DNA MER1_type 2682 2860 -2 231 303 11 34 chr1 74358380 74358469 -207835195 + MIR SINE MIR 69 155 -107 332 245 64 0 chr1 74358590 74358684 -207834980 - L2 LINE L2 0 3313 3214 2448 77 0 0 chr1 74358710 74359008 -207834656 + AluSg1 SINE Alu 1 298 -11 471 254 171 0 chr1 74359019 74359212 -207834452 + MIR SINE MIR 34 259 -3 191 304 17 52 chr1 74359315 74359430 -207834234 - MIR SINE MIR -81 127 17 2104 133 0 22 chr1 74359457 74359773 -207833891 - AluSx SINE Alu -3 309 1 2372 65 3 3 chr1 74359850 74360142 -207833522 + AluY SINE Alu 1 292 -19 341 307 88 69 chr1 74360401 74360654 -207833010 - L2 LINE L2 -33 3239 2977 2748 79 2 51 chr1 74360654 74361009 -207832655 - THE1C LTR MaLR 0 375 39 2071 129 7 0 chr1 74361009 74361295 -207832369 + AluSq SINE Alu 1 288 -25 2748 79 2 51 chr1 74361295 74361333 -207832331 - THE1C LTR MaLR -336 39 1 341 307 88 69 chr1 74361333 74361398 -207832266 - L2 LINE L2 -295 2977 2915 424 219 9 9 chr1 74361555 74361660 -207832004 - MER5B DNA MER1_type -73 105 1 1704 176 7 7 chr1 74361705 74361994 -207831670 - AluJb SINE Alu -23 289 1 1686 163 14 7 chr1 74362125 74362402 -207831262 + AluJb SINE Alu 15 293 -19 1664 170 62 3 chr1 74362495 74362783 -207830881 - AluJo SINE Alu -6 306 2 352 225 0 108 chr1 74363042 74363162 -207830502 + MIR SINE MIR 85 191 -71 1336 282 51 67 chr1 74363194 74363434 -207830230 + Charlie2b DNA MER1_type 47 289 -2493 2411 88 3 0 chr1 74363434 74363741 -207829923 + AluSp SINE Alu 1 308 -5 1336 282 51 67 chr1 74363741 74364146 -207829518 + Charlie2b DNA MER1_type 289 682 -2100 215 31 31 0 chr1 74364138 74364170 -207829494 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 800 98 0 0 chr1 74364207 74364309 -207829355 - AluSx SINE Alu -17 295 194 966 140 7 0 chr1 74364310 74364446 -207829218 - AluSx SINE Alu -171 141 5 253 0 0 0 chr1 74364463 74364491 -207829173 + (TTTTA)n Simple_repeat Simple_repeat 2 170 0 1982 65 4 8 chr1 74364491 74364738 -207828926 - AluY SINE Alu -1 309 37 3960 211 66 60 chr1 74364740 74365000 -207828664 + Charlie2a DNA MER1_type 1465 1722 -1140 2507 76 0 6 chr1 74365000 74365314 -207828350 + AluSp SINE Alu 1 312 -1 3960 211 66 60 chr1 74365314 74365552 -207828112 + Charlie2a DNA MER1_type 1722 1957 -905 2122 131 3 0 chr1 74365552 74365850 -207827814 - AluSp SINE Alu -14 299 1 3960 211 66 60 chr1 74365850 74366451 -207827213 + Charlie2a DNA MER1_type 1957 2553 -309 1684 164 7 42 chr1 74366451 74366761 -207826903 - AluJo SINE Alu -13 299 1 3960 211 66 60 chr1 74366761 74366842 -207826822 + Charlie2a DNA MER1_type 2553 2632 -230 1514 191 67 3 chr1 74366842 74367125 -207826539 + AluJb SINE Alu 1 301 -11 3960 211 66 60 chr1 74367125 74367177 -207826487 + Charlie2a DNA MER1_type 2632 2682 -180 2652 30 0 0 chr1 74367177 74367472 -207826192 + AluY SINE Alu 1 295 -16 3960 211 66 60 chr1 74367472 74367625 -207826039 + Charlie2a DNA MER1_type 2682 2862 0 195 365 0 12 chr1 74367813 74367898 -207825766 + L2 LINE L2 2560 2643 -671 596 248 0 0 chr1 74367964 74368093 -207825571 - FLAM_A SINE Alu 0 133 5 195 269 54 32 chr1 74368097 74368190 -207825474 + L2 LINE L2 2686 2780 -534 2074 140 13 3 chr1 74368201 74368508 -207825156 + AluSx SINE Alu 1 310 -2 795 183 0 37 chr1 74368510 74368674 -207824990 + AluJo/FRAM SINE Alu 140 297 -5 2132 109 0 31 chr1 74368753 74368886 -207824778 - AluSg SINE Alu 0 310 174 1047 179 136 64 chr1 74368886 74369306 -207824358 + LTR7 LTR ERV1 1 450 0 2132 109 0 31 chr1 74369306 74369492 -207824172 - AluSg SINE Alu -136 174 1 563 319 122 7 chr1 74369659 74369938 -207823726 + LTR16C LTR ERVL 181 491 0 2616 103 0 48 chr1 74369959 74370355 -207823309 - MER51B LTR ERV1 0 377 1 366 255 75 0 chr1 74370404 74370498 -207823166 + L2 LINE L2 3195 3295 -18 229 243 153 85 chr1 74370503 74370680 -207822984 - MIR SINE MIR -3 259 71 2026 179 166 22 chr1 74370683 74371224 -207822440 + LTR29 LTR ERV1 2 620 -2 2142 97 0 61 chr1 74371307 74371421 -207822243 + AluSx SINE Alu 1 120 -192 8044 66 4 2 chr1 74371421 74372388 -207821276 + LTR5 LTR ERVK 1 969 0 2142 97 0 61 chr1 74372388 74372416 -207821248 + AluSx SINE Alu 120 148 -164 2103 123 0 19 chr1 74372416 74372734 -207820930 + AluSx SINE Alu 1 312 0 2142 97 0 61 chr1 74372734 74372900 -207820764 + AluSx SINE Alu 148 291 -21 780 215 119 4 chr1 74374074 74374335 -207819329 - Charlie1 DNA MER1_type -125 2636 2346 317 213 16 0 chr1 74374333 74374394 -207819270 - Charlie1 DNA MER1_type -2690 71 10 * 310 283 10 0 chr1 74374395 74374494 -207819170 - L1MC/D LINE L1 -2045 5763 5664 1833 172 0 17 chr1 74374625 74374927 -207818737 + AluJo SINE Alu 1 297 -15 253 229 10 104 chr1 74374957 74375053 -207818611 - L2 LINE L2 -188 3084 2998 2165 106 0 20 chr1 74375628 74375930 -207817734 - AluSx SINE Alu -16 296 1 206 355 45 7 chr1 74376339 74376494 -207817170 - MIR SINE MIR -4 258 98 1804 129 10 55 chr1 74376499 74376808 -207816856 + AluJb SINE Alu 1 295 -17 2419 89 0 3 chr1 74376811 74377114 -207816550 + AluSg SINE Alu 1 302 -8 254 279 15 0 chr1 74377137 74377205 -207816459 - MIR SINE MIR -147 115 47 980 221 15 15 chr1 74377312 74377516 -207816148 - MLT1A1 LTR MaLR 0 365 162 22 35 0 0 chr1 74377549 74377578 -207816086 + AT_rich Low_complexity Low_complexity 1 29 0 467 230 0 0 chr1 74377582 74377669 -207815995 - FLAM_C SINE Alu -25 118 32 1822 175 0 0 chr1 74377726 74378012 -207815652 - AluJo SINE Alu -20 292 7 531 124 144 0 chr1 74378024 74378121 -207815543 - MLT1A1 LTR MaLR -254 111 1 437 297 92 14 chr1 74378942 74379089 -207814575 - L2 LINE L2 -179 3134 3000 1729 139 24 14 chr1 74379089 74379377 -207814287 + AluJo SINE Alu 1 291 -21 437 297 92 14 chr1 74379377 74379594 -207814070 - L2 LINE L2 -313 3000 2733 295 197 0 26 chr1 74379608 74379684 -207813980 - L1MB7 LINE L1 0 6184 6111 910 106 0 0 chr1 74379684 74379807 -207813857 + AluY SINE Alu 1 123 -188 2831 165 98 5 chr1 74379809 74380379 -207813285 - L1MB7 LINE L1 -58 6126 5504 2671 113 55 14 chr1 74380392 74380748 -207812916 - MER57B LTR ERV1 0 434 57 3570 137 23 74 chr1 74380748 74381476 -207812188 - LTR8 LTR ERV1 0 691 1 2671 113 55 14 chr1 74381476 74381535 -207812129 - MER57B LTR ERV1 -377 57 2 1581 150 71 8 chr1 74381554 74381947 -207811717 - L1MB7 LINE L1 -685 5489 5073 330 221 134 31 chr1 74381953 74382080 -207811584 - L2 LINE L2 -562 2752 2613 210 242 65 0 chr1 74382384 74382446 -207811218 - L2 LINE L2 -217 3055 2990 1039 164 0 0 chr1 74382541 74382700 -207810964 + FAM SINE Alu 17 175 -10 369 0 0 0 chr1 74383434 74383475 -207810189 + (TG)n Simple_repeat Simple_repeat 2 42 0 2138 122 7 3 chr1 74383747 74384042 -207809622 + AluSx SINE Alu 9 304 -8 487 269 51 101 chr1 74384556 74384948 -207808716 - L3 LINE CR1 -15 1562 1149 2252 112 7 0 chr1 74385032 74385335 -207808329 - AluSq SINE Alu -8 305 1 712 193 0 15 chr1 74385346 74385481 -207808183 - FLAM_C SINE Alu 0 133 1 1830 167 3 6 chr1 74385782 74386093 -207807571 + AluJo SINE Alu 1 310 -2 331 294 91 0 chr1 74386312 74386455 -207807209 + MIR SINE MIR 48 203 -59 679 194 209 76 chr1 74386460 74386815 -207806849 - MER96B DNA MER1_type? -4 413 12 2166 46 50 21 chr1 74386984 74387256 -207806408 + AluY SINE Alu 1 283 -28 198 0 0 0 chr1 74387256 74387278 -207806386 + (CA)n Simple_repeat Simple_repeat 1 22 0 1704 165 10 20 chr1 74387837 74388134 -207805530 - AluJo SINE Alu -2 310 17 2076 103 13 13 chr1 74388193 74388494 -207805170 - AluSg SINE Alu -9 301 1 1807 155 25 0 chr1 74388675 74388952 -207804712 + AluSx SINE Alu 1 284 -28 369 0 0 0 chr1 74388953 74388994 -207804670 + (TA)n Simple_repeat Simple_repeat 2 42 0 2183 133 0 3 chr1 74389745 74390053 -207803611 - AluSx SINE Alu -5 307 1 1653 163 25 11 chr1 74390489 74390765 -207802899 + AluJb SINE Alu 16 295 -17 398 277 61 34 chr1 74391631 74391779 -207801885 + MIR SINE MIR 56 207 -55 23 33 0 0 chr1 74391809 74391839 -207801825 + AT_rich Low_complexity Low_complexity 1 30 0 240 305 39 47 chr1 74393585 74393713 -207799951 - MIR3 SINE MIR -53 155 29 23 33 0 0 chr1 74394211 74394241 -207799423 + AT_rich Low_complexity Low_complexity 1 30 0 248 393 14 7 chr1 74395166 74395311 -207798353 + MER91A DNA MER1_type 1 146 -50 363 346 8 0 chr1 74395723 74395850 -207797814 + MER91A DNA MER1_type 24 151 -45 721 243 25 68 chr1 74396773 74396980 -207796684 + MIR SINE MIR 9 206 -56 1958 153 17 3 chr1 74396980 74397280 -207796384 + AluJb SINE Alu 1 304 -8 721 243 25 68 chr1 74397280 74397307 -207796357 + MIR SINE MIR 206 233 -29 585 241 79 56 chr1 74397355 74397571 -207796093 - MIR SINE MIR -40 222 2 1282 144 0 0 chr1 74397589 74397776 -207795888 + AluSx SINE Alu 1 187 -125 2117 108 35 3 chr1 74398824 74399111 -207794553 - AluSx SINE Alu -16 296 1 1698 160 3 31 chr1 74399340 74399633 -207794031 - AluJo SINE Alu -16 296 12 224 174 65 0 chr1 74400475 74400521 -207793143 + L2 LINE L2 3261 3309 -4 1862 150 26 7 chr1 74400662 74400968 -207792696 - AluSx SINE Alu 0 312 1 465 50 0 0 chr1 74401074 74401134 -207792530 + (TG)n Simple_repeat Simple_repeat 2 61 0 505 241 159 0 chr1 74402624 74402769 -207790895 + MER45A DNA AcHobo 11 178 0 2073 103 45 14 chr1 74403048 74403338 -207790326 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 74403530 74403551 -207790113 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 74403551 74403574 -207790090 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1764 152 36 7 chr1 74403574 74403851 -207789813 - AluSx SINE Alu -27 285 1 355 336 14 14 chr1 74403851 74403997 -207789667 - L2 LINE L2 -7 3306 3161 2323 176 90 24 chr1 74404235 74404501 -207789163 + L1MB7 LINE L1 5640 5887 -297 2451 48 41 3 chr1 74404501 74404795 -207788869 + AluY SINE Alu 1 305 -6 2323 176 90 24 chr1 74404795 74405039 -207788625 + L1MB7 LINE L1 5887 6184 0 325 198 11 44 chr1 74405075 74405166 -207788498 + MIR SINE MIR 175 262 0 1881 124 22 0 chr1 74405536 74405809 -207787855 + AluSx SINE Alu 1 279 -33 405 0 0 0 chr1 74406016 74406061 -207787603 + (TC)n Simple_repeat Simple_repeat 2 46 0 225 0 0 0 chr1 74406060 74406085 -207787579 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 2429 84 7 0 chr1 74406090 74406398 -207787266 - AluSg SINE Alu 0 310 1 1728 195 3 7 chr1 74406967 74407270 -207786394 - AluJb SINE Alu -10 302 1 249 181 96 53 chr1 74407291 74407385 -207786279 - L1ME4a LINE L1 -2 6119 6022 1236 280 72 10 chr1 74407412 74408033 -207785631 - L2 LINE L2 -233 3080 2413 225 186 0 0 chr1 74408756 74408799 -207784865 + GA-rich Low_complexity Low_complexity 2 44 0 22 0 0 0 chr1 74409608 74409630 -207784034 + GC_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr1 74410874 74410897 -207782767 + (TC)n Simple_repeat Simple_repeat 2 24 0 2044 108 3 43 chr1 74411572 74411877 -207781787 - AluSx SINE Alu -19 293 1 184 300 57 29 chr1 74411952 74412022 -207781642 - L2 LINE L2 -7 3306 3235 538 179 179 0 chr1 74412038 74412150 -207781514 - FLAM_C SINE Alu -10 133 2 243 306 30 37 chr1 74412336 74412470 -207781194 - L3 LINE CR1 -160 1417 1285 2531 78 0 0 chr1 74413074 74413380 -207780284 - AluY SINE Alu -5 306 1 1113 92 14 0 chr1 74413390 74413532 -207780132 - AluSg/x SINE Alu -23 287 144 2185 113 23 3 chr1 74413535 74413837 -207779827 - AluSx SINE Alu -4 308 1 2241 100 30 0 chr1 74413881 74414180 -207779484 - AluSp SINE Alu -5 308 1 219 139 0 0 chr1 74414245 74414281 -207779383 + (CA)n Simple_repeat Simple_repeat 2 37 0 734 202 10 57 chr1 74414843 74415036 -207778628 - FRAM SINE Alu 0 176 1 1828 176 38 33 chr1 74416713 74417105 -207776559 - MSTD LTR MaLR -2 394 1 3328 232 139 39 chr1 74417105 74418185 -207775479 - MSTD-int LTR MaLR 0 1651 464 821 185 62 7 chr1 74418227 74418373 -207775291 + MER8 DNA MER2_type 24 177 -62 254 102 23 193 chr1 74418406 74418438 -207775226 - Tigger2 DNA MER2_type -2645 73 37 1705 154 59 0 chr1 74418438 74418710 -207774954 + AluJb SINE Alu 12 299 -13 254 102 23 193 chr1 74418710 74418765 -207774899 - Tigger2 DNA MER2_type -2681 37 1 2186 207 14 43 chr1 74418775 74419071 -207774593 - MSTD-int LTR MaLR -1232 503 227 2178 112 14 7 chr1 74419071 74419366 -207774298 - AluSx SINE Alu -15 297 1 2186 207 14 43 chr1 74419366 74419586 -207774078 - MSTD-int LTR MaLR -1508 227 2 1600 184 100 30 chr1 74419588 74419958 -207773706 - MSTD LTR MaLR 0 396 1 444 222 241 33 chr1 74420157 74420369 -207773295 + MIR SINE MIR 7 262 0 308 232 152 7 chr1 74421214 74421252 -207772412 - MER113 DNA MER1_type? -34 487 456 1542 164 0 61 chr1 74421252 74421562 -207772102 + AluJb SINE Alu 1 291 -21 308 232 152 7 chr1 74421562 74421674 -207771990 - MER113 DNA MER1_type? -65 456 315 222 116 0 0 chr1 74421713 74421756 -207771908 + (T)n Simple_repeat Simple_repeat 1 43 0 372 291 88 11 chr1 74421765 74421887 -207771777 - MER113 DNA MER1_type? -237 284 173 2055 121 21 14 chr1 74421887 74422219 -207771445 - AluSg SINE Alu 0 310 1 372 291 88 11 chr1 74422219 74422357 -207771307 - MER113 DNA MER1_type? -348 173 4 2608 56 0 7 chr1 74422682 74422986 -207770678 + AluY SINE Alu 1 302 -9 494 286 129 9 chr1 74423109 74423326 -207770338 - MIR SINE MIR -17 245 3 223 299 15 15 chr1 74423667 74423734 -207769930 - MIR3 SINE MIR -30 178 112 763 179 95 45 chr1 74423799 74423898 -207769766 + MER5A DNA MER1_type 1 94 -95 1404 166 161 30 chr1 74423898 74424296 -207769368 + LTR7 LTR ERV1 1 450 0 763 179 95 45 chr1 74424296 74424375 -207769289 + MER5A DNA MER1_type 94 188 -1 2102 121 0 0 chr1 74424496 74424813 -207768851 - AluSx SINE Alu 0 317 1 540 232 32 0 chr1 74425577 74425702 -207767962 + L2 LINE L2 3185 3313 0 183 42 0 0 chr1 74425942 74425966 -207767698 + (GAGTG)n Simple_repeat Simple_repeat 3 26 0 1816 135 4 4 chr1 74426530 74426797 -207766867 - AluSx SINE Alu -45 267 1 2389 108 8 30 chr1 74426827 74427197 -207766467 - THE1B LTR MaLR -2 362 1 1852 133 7 39 chr1 74428830 74429139 -207764525 + AluJb SINE Alu 5 303 -9 2261 88 0 36 chr1 74429299 74429607 -207764057 + AluSg SINE Alu 1 297 -13 1390 158 13 9 chr1 74429740 74429968 -207763696 - MER46A DNA MER2_type -1 235 7 279 0 0 0 chr1 74430135 74430166 -207763498 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 2076 118 0 4 chr1 74430166 74430446 -207763218 - AluSq SINE Alu -34 279 1 188 244 0 0 chr1 74430713 74430754 -207762910 - L2 LINE L2 -9 3304 3264 2378 68 10 0 chr1 74430830 74431123 -207762541 - AluSc SINE Alu -13 296 1 217 322 141 28 chr1 74431786 74431963 -207761701 - L2 LINE L2 -223 3049 2853 2199 110 0 0 chr1 74432147 74432453 -207761211 + AluY SINE Alu 1 306 0 1781 183 10 13 chr1 74432898 74433199 -207760465 - AluJo SINE Alu -7 305 6 187 299 146 15 chr1 74433200 74433337 -207760327 + MIR SINE MIR 79 233 -29 22 35 0 0 chr1 74433359 74433388 -207760276 + AT_rich Low_complexity Low_complexity 1 29 0 2329 104 0 3 chr1 74433553 74433851 -207759813 + AluSq SINE Alu 1 297 -16 1375 244 165 71 chr1 74434026 74434235 -207759429 - HAL1b LINE L1 -11 1337 1149 2133 125 3 3 chr1 74434235 74434532 -207759132 - AluSx SINE Alu -15 297 1 1375 244 165 71 chr1 74434532 74434946 -207758718 - HAL1b LINE L1 -199 1149 776 517 143 22 0 chr1 74434946 74435037 -207758627 + L1MB8 LINE L1 6075 6167 -11 1375 244 165 71 chr1 74435037 74435261 -207758403 - HAL1b LINE L1 -572 776 575 1516 177 36 39 chr1 74435261 74435566 -207758098 - AluJo SINE Alu -8 304 1 1375 244 165 71 chr1 74435566 74435847 -207757817 - HAL1b LINE L1 -773 575 100 492 325 150 9 chr1 74435965 74436285 -207757379 + L2 LINE L2 2916 3280 -33 1127 189 59 75 chr1 74436498 74436625 -207757039 + AluJo SINE Alu 1 129 -173 183 42 0 0 chr1 74436625 74436649 -207757015 + (CA)n Simple_repeat Simple_repeat 1 24 0 1127 189 59 75 chr1 74436649 74436828 -207756836 + AluJo SINE Alu 129 302 0 254 300 0 0 chr1 74437212 74437272 -207756392 + polypyrimidine Low_complexity Low_complexity 4 63 0 512 200 0 0 chr1 74437275 74437370 -207756294 - FRAM SINE Alu -39 137 43 3608 159 67 8 chr1 74437592 74438252 -207755412 - L1PA16 LINE L1 0 6166 5468 21 0 0 0 chr1 74439092 74439113 -207754551 + AT_rich Low_complexity Low_complexity 1 21 0 1750 138 50 14 chr1 74439828 74440110 -207753554 - AluJb SINE Alu -2 310 19 180 343 15 0 chr1 74440536 74440603 -207753061 + L2 LINE L2 336 403 -2911 524 264 192 0 chr1 74440823 74441005 -207752659 - MIR SINE MIR -26 236 20 404 250 175 0 chr1 74441041 74441161 -207752503 + L1MC/D LINE L1 5683 5823 -1985 547 196 0 0 chr1 74441162 74441259 -207752405 + FLAM_C SINE Alu 29 125 -18 337 325 84 12 chr1 74441517 74441683 -207751981 + MIR SINE MIR 1 178 -84 832 261 128 39 chr1 74441698 74442213 -207751451 - L2 LINE L2 0 3313 2761 735 207 0 0 chr1 74442331 74442466 -207751198 - AluSg/x SINE Alu -15 297 163 1383 147 0 0 chr1 74442514 74442736 -207750928 - AluJo SINE Alu 0 306 85 202 394 16 24 chr1 74443096 74443223 -207750441 - L3 LINE CR1 -531 1046 921 251 238 15 180 chr1 74443640 74443751 -207749913 - MIR SINE MIR -12 250 122 1801 143 107 41 chr1 74443751 74444114 -207749550 + MLT1B LTR MaLR 1 387 -3 2170 111 3 7 chr1 74444123 74444442 -207749222 - AluSx SINE Alu 0 312 1 251 238 15 180 chr1 74444442 74444581 -207749083 - MIR SINE MIR -149 113 33 2252 113 0 6 chr1 74445192 74445503 -207748161 - AluSc SINE Alu 0 309 1 2000 124 39 0 chr1 74446173 74446455 -207747209 - AluSx SINE Alu -19 293 1 217 118 39 20 chr1 74446655 74446706 -207746958 + CT-rich Low_complexity Low_complexity 2 53 0 1711 170 6 49 chr1 74446708 74447032 -207746632 - AluJo SINE Alu -2 310 1 1277 132 50 21 chr1 74447902 74448144 -207745520 - L1MA9 LINE L1 0 6312 6064 291 226 87 70 chr1 74448304 74448419 -207745245 - MIR SINE MIR -60 148 32 687 126 48 0 chr1 74448566 74448669 -207744995 - L1PA16 LINE L1 -9 6157 6050 332 290 32 14 chr1 74448961 74449182 -207744482 + L1P5 LINE L1 5263 5487 -664 44 63 0 0 chr1 74449182 74449261 -207744403 + AT_rich Low_complexity Low_complexity 1 79 0 253 232 9 47 chr1 74449499 74449611 -207744053 + L1ME LINE L1 5724 5829 -297 3674 193 74 17 chr1 74449620 74450458 -207743206 - L1MC2 LINE L1 -6 6338 5453 2213 137 0 0 chr1 74450499 74450805 -207742859 - AluSx SINE Alu -6 306 1 541 153 20 20 chr1 74451478 74451576 -207742088 + AluJb SINE Alu 185 282 -30 4247 93 37 17 chr1 74451909 74452509 -207741155 - LTR9 LTR ERV1 0 612 1 309 243 95 27 chr1 74453090 74453238 -207740426 + L1M4 LINE L1 5047 5204 -942 2656 27 3 0 chr1 74453238 74453531 -207740133 + AluY SINE Alu 1 294 -17 1640 149 45 35 chr1 74453778 74454066 -207739598 + AluJb SINE Alu 9 299 -13 192 40 0 0 chr1 74454066 74454091 -207739573 + (GA)n Simple_repeat Simple_repeat 2 26 0 1920 158 40 0 chr1 74454144 74454441 -207739223 + AluSx SINE Alu 1 309 -3 2125 117 28 0 chr1 74454598 74454888 -207738776 + AluSx SINE Alu 1 298 -14 503 250 56 7 chr1 74455877 74456021 -207737643 + MIR SINE MIR 56 206 -56 2053 157 3 0 chr1 74456102 74456407 -207737257 - AluJb SINE Alu -5 307 2 374 247 11 11 chr1 74456830 74456919 -207736745 - MER3 DNA MER1_type -120 89 1 414 200 12 12 chr1 74457143 74457228 -207736436 - MER3 DNA MER1_type -124 85 1 2357 94 0 19 chr1 74457354 74457662 -207736002 - AluSx SINE Alu -10 302 1 1672 189 27 0 chr1 74457799 74458096 -207735568 + MLT1A1 LTR MaLR 1 305 -60 506 185 0 0 chr1 74458097 74458178 -207735486 + AluJ/FLAM SINE Alu 2 82 -230 369 147 13 67 chr1 74458205 74458280 -207735384 + MLT1A1 LTR MaLR 291 361 -4 200 147 0 0 chr1 74458318 74458352 -207735312 + MIR SINE MIR 89 122 -140 183 241 0 69 chr1 74458827 74458885 -207734779 - L3 LINE CR1 -713 864 811 26 0 0 0 chr1 74458957 74458983 -207734681 + AT_rich Low_complexity Low_complexity 1 26 0 471 340 132 32 chr1 74458995 74459398 -207734266 - L3 LINE CR1 -524 1053 611 941 171 44 0 chr1 74459918 74460076 -207733588 - HUERS-P1 LTR ERV1 -6098 165 1 1459 145 0 18 chr1 74460076 74460304 -207733360 - LTR8 LTR ERV1 0 691 468 312 299 116 14 chr1 74460388 74460820 -207732844 + L1M4 LINE L1 2677 3152 -2994 438 272 15 7 chr1 74460912 74461048 -207732616 + L1M4 LINE L1 4031 4167 -1979 830 238 51 0 chr1 74461061 74461275 -207732389 + L1MC4 LINE L1 6789 7013 -1029 * 3392 203 66 32 chr1 74461264 74461749 -207731915 + L1M4 LINE L1 4254 4721 -1425 2597 51 0 10 chr1 74461749 74462061 -207731603 + AluY SINE Alu 1 309 -2 3392 203 66 32 chr1 74462061 74462324 -207731340 + L1M4 LINE L1 4721 5041 -1105 2198 120 3 0 chr1 74462324 74462623 -207731041 + AluSx SINE Alu 1 300 -12 3392 203 66 32 chr1 74462623 74462802 -207730862 + L1M4 LINE L1 5041 5213 -933 4141 102 16 8 chr1 74462805 74463421 -207730243 + L1PA16 LINE L1 5543 6163 -3 450 234 12 144 chr1 74463503 74463586 -207730078 + L1MC4 LINE L1 7095 7187 -855 2343 106 3 0 chr1 74463586 74463897 -207729767 + AluSq SINE Alu 1 312 -1 450 234 12 144 chr1 74463897 74464070 -207729594 + L1MC4 LINE L1 7187 7317 -725 360 270 87 39 chr1 74464110 74464258 -207729406 + L1MC4 LINE L1 7694 7833 -209 490 221 18 9 chr1 74464258 74464371 -207729293 + MER81 DNA DNA 1 114 0 360 270 87 39 chr1 74464371 74464555 -207729109 + L1MC4 LINE L1 7833 8042 0 2124 103 13 26 chr1 74464935 74465247 -207728417 + AluSx SINE Alu 1 308 -4 303 260 143 73 chr1 74466529 74466802 -207726862 - MER102a DNA MER1_type 0 330 39 215 222 19 0 chr1 74469706 74469760 -207723904 + CT-rich Low_complexity Low_complexity 2 56 0 215 333 13 0 chr1 74470105 74470183 -207723481 + MIR3 SINE MIR 124 202 -6 412 356 45 14 chr1 74470302 74470524 -207723140 - MIR SINE MIR -14 248 20 1544 201 4 11 chr1 74470622 74470901 -207722763 + AluJo SINE Alu 18 294 -18 474 292 65 0 chr1 74473914 74474099 -207719565 - LTR33A LTR ERVL -261 262 66 1966 121 9 44 chr1 74474209 74474524 -207719140 - AluJo SINE Alu -8 304 1 1127 275 54 0 chr1 74474538 74474869 -207718795 + MLT1I LTR MaLR 59 407 -2 222 359 66 66 chr1 74474942 74475140 -207718524 - L2 LINE L2 -61 3211 3014 512 255 44 48 chr1 74475430 74475681 -207717983 - MER102b DNA MER1_type -10 331 82 243 0 0 0 chr1 74475865 74475892 -207717772 + (TC)n Simple_repeat Simple_repeat 2 28 0 882 180 0 12 chr1 74476695 74476856 -207716808 + AluJb SINE Alu 137 295 -17 261 83 0 0 chr1 74476856 74476892 -207716772 + (CATA)n Simple_repeat Simple_repeat 3 38 0 180 176 0 0 chr1 74477355 74477389 -207716275 + A-rich Low_complexity Low_complexity 1 34 0 241 235 111 12 chr1 74478222 74478303 -207715361 + HAL1b LINE L1 450 538 -810 1592 164 55 58 chr1 74478374 74478684 -207714980 - AluJo SINE Alu 0 312 4 2245 109 3 13 chr1 74478712 74479015 -207714649 - AluSx SINE Alu -12 300 1 433 305 127 76 chr1 74479777 74480465 -207713199 + L1M2 LINE L1 586 1308 -5541 25 0 0 0 chr1 74480979 74481004 -207712660 + AT_rich Low_complexity Low_complexity 1 25 0 273 316 90 0 chr1 74481127 74481260 -207712404 - MIR3 SINE MIR -27 181 37 228 86 0 0 chr1 74481674 74481709 -207711955 + MER34C LTR ERV1 67 101 -484 * 1747 196 59 76 chr1 74481690 74482230 -207711434 + MER34B LTR ERV1 35 565 0 28 29 0 0 chr1 74483465 74483500 -207710164 + AT_rich Low_complexity Low_complexity 1 35 0 240 259 51 78 chr1 74483979 74484043 -207709621 - MIR SINE MIR -66 142 81 1702 162 24 3 chr1 74484043 74484333 -207709331 + AluJo SINE Alu 1 296 -16 240 259 51 78 chr1 74484333 74484384 -207709280 - MIR SINE MIR -127 81 30 180 0 0 0 chr1 74484530 74484550 -207709114 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1058 165 5 11 chr1 74484563 74484751 -207708913 - U2 snRNA snRNA -1 187 1 378 61 0 0 chr1 74485070 74485119 -207708545 + (TG)n Simple_repeat Simple_repeat 2 50 0 1850 163 3 10 chr1 74488579 74488880 -207704784 - AluJb SINE Alu -11 301 3 265 329 105 20 chr1 74489713 74489865 -207703799 + L2 LINE L2 3104 3268 -4 1924 162 14 27 chr1 74491320 74491690 -207701974 + MLT1A1 LTR MaLR 1 365 0 203 289 10 77 chr1 74492009 74492113 -207701551 - MIR SINE MIR -46 216 120 1044 232 25 25 chr1 74492409 74492650 -207701014 + MIR SINE MIR 8 248 -14 345 283 132 0 chr1 74492773 74492879 -207700785 + L2 LINE L2 3189 3308 -5 617 236 8 0 chr1 74493042 74493169 -207700495 + MIR SINE MIR 2 129 -133 503 167 0 22 chr1 74493208 74493298 -207700366 - Tigger7 DNA MER2_type 0 2491 2404 1491 194 12 0 chr1 74493311 74493569 -207700095 - Tigger7 DNA MER2_type -2220 267 7 322 229 0 0 chr1 74493575 74493636 -207700028 + MIR SINE MIR 197 257 -5 416 235 47 0 chr1 74494083 74494168 -207699496 - L2 LINE L2 -16 3256 3168 421 265 54 69 chr1 74494849 74495053 -207698611 - MIR SINE MIR -59 203 3 556 297 39 40 chr1 74495566 74495812 -207697852 - MIR SINE MIR -3 259 6 191 103 26 0 chr1 74495981 74496020 -207697644 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 332 351 18 0 chr1 74496022 74496133 -207697531 - L2 LINE L2 0 3313 3201 196 222 22 0 chr1 74496305 74496350 -207697314 + L2 LINE L2 3258 3303 -10 362 222 162 0 chr1 74496636 74496735 -207696929 - L2 LINE L2 0 3272 3158 382 133 0 33 chr1 74496891 74496951 -207696713 - MER5B DNA MER1_type 0 178 121 250 389 111 8 chr1 74496997 74497123 -207696541 + L2 LINE L2 3134 3272 0 880 248 104 0 chr1 74497208 74497430 -207696234 + MIR SINE MIR 18 262 0 393 247 106 41 chr1 74497437 74497607 -207696057 + L2 LINE L2 3133 3313 0 303 261 76 42 chr1 74499281 74499400 -207694264 + MIR SINE MIR 29 151 -111 273 189 75 28 chr1 74499400 74499506 -207694158 + L1MB1 LINE L1 5096 5206 -940 490 167 0 0 chr1 74499516 74499612 -207694052 + L1MA8 LINE L1 4957 5052 -1094 4959 141 25 11 chr1 74499638 74500559 -207693105 + L1MA8 LINE L1 5358 6291 0 1953 140 3 3 chr1 74500561 74500846 -207692818 - AluJb SINE Alu -23 289 5 1315 178 53 61 chr1 74500867 74501227 -207692437 + L1MB1 LINE L1 5812 6168 0 316 257 174 21 chr1 74501458 74501602 -207692062 - MIR SINE MIR -32 230 65 188 278 83 102 chr1 74502172 74502280 -207691384 + L2 LINE L2 3073 3178 -94 207 333 35 35 chr1 74502464 74502551 -207691113 - L2 LINE L2 -6 3266 3180 195 42 0 0 chr1 74502810 74502834 -207690830 + (CA)n Simple_repeat Simple_repeat 2 25 0 977 277 57 23 chr1 74503922 74504272 -207689392 - L2 LINE L2 -27 3286 2925 24 32 0 0 chr1 74504518 74504549 -207689115 + AT_rich Low_complexity Low_complexity 1 31 0 1445 205 40 7 chr1 74505171 74505449 -207688215 - AluJo SINE Alu -23 289 3 275 213 0 16 chr1 74506069 74506130 -207687534 + MIR SINE MIR 94 153 -109 315 357 117 40 chr1 74507017 74507418 -207686246 + L2 LINE L2 2836 3267 -5 2127 151 32 37 chr1 74507431 74507895 -207685769 + L1MB7 LINE L1 5704 6165 -19 407 245 41 20 chr1 74508062 74508160 -207685504 + MIR3 SINE MIR 88 187 -21 231 254 0 34 chr1 74508806 74508865 -207684799 + MIR3 SINE MIR 134 190 -18 2486 105 14 6 chr1 74508956 74509317 -207684347 + THE1B LTR MaLR 1 364 0 1316 149 52 99 chr1 74510029 74510294 -207683370 + MLT1A1 LTR MaLR 1 244 -121 799 169 0 22 chr1 74510294 74510430 -207683234 + FLAM_C SINE Alu 1 133 0 1316 149 52 99 chr1 74510430 74510547 -207683117 + MLT1A1 LTR MaLR 244 365 0 1483 309 168 28 chr1 74510550 74511746 -207681918 - L3 LINE CR1 -79 1498 135 2384 82 0 3 chr1 74512427 74512732 -207680932 + AluSc SINE Alu 6 309 0 378 270 158 0 chr1 74514818 74514951 -207678713 - MIR SINE MIR -62 146 40 321 232 161 52 chr1 74515079 74515234 -207678430 + MIR SINE MIR 91 262 0 373 273 38 133 chr1 74515352 74515752 -207677912 - L2 LINE L2 -577 2737 2376 12650 165 25 18 chr1 74516437 74516577 -207677087 + L1MA4 LINE L1 2631 2768 -3532 1945 124 22 4 chr1 74516577 74516888 -207676776 + AluSg SINE Alu 1 316 0 12650 165 25 18 chr1 74516888 74517914 -207675750 + L1MA4 LINE L1 2768 3785 -2515 2405 74 0 3 chr1 74517914 74518213 -207675451 + AluY SINE Alu 1 298 -13 12650 165 25 18 chr1 74518213 74518375 -207675289 + L1MA4 LINE L1 3785 3944 -2356 2134 104 28 3 chr1 74518375 74518664 -207675000 + AluSq SINE Alu 1 296 -17 12650 165 25 18 chr1 74518664 74520682 -207672982 + L1MA4 LINE L1 3944 6008 -292 391 281 96 7 chr1 74520926 74521061 -207672603 + MIR SINE MIR 43 189 -73 408 284 52 45 chr1 74521125 74521259 -207672405 + L2 LINE L2 3138 3272 0 378 0 0 0 chr1 74521451 74521493 -207672171 + (CA)n Simple_repeat Simple_repeat 2 43 0 282 231 120 60 chr1 74522258 74522375 -207671289 - MIR SINE MIR -92 170 47 558 196 33 7 chr1 74523242 74523395 -207670269 + L1MB4 LINE L1 6019 6175 -5 1821 151 19 0 chr1 74524569 74524840 -207668824 + AluSx SINE Alu 1 276 -36 389 119 0 17 chr1 74524844 74524903 -207668761 + (GGGGA)n Simple_repeat Simple_repeat 2 59 0 713 173 12 12 chr1 74524903 74525071 -207668593 + GA-rich Low_complexity Low_complexity 1 168 0 263 64 64 39 chr1 74525084 74525162 -207668502 + GA-rich Low_complexity Low_complexity 4 83 0 219 375 0 0 chr1 74525286 74525358 -207668306 - L2 LINE L2 -457 2857 2786 25 0 0 0 chr1 74525604 74525629 -207668035 + AT_rich Low_complexity Low_complexity 1 25 0 504 16 0 0 chr1 74525629 74525691 -207667973 + L1PA4 LINE L1 6007 6068 -87 686 152 177 25 chr1 74526333 74526491 -207667173 + MER5A DNA MER1_type 1 182 -7 322 258 10 41 chr1 74526534 74526631 -207667033 - MIR3 SINE MIR -4 204 111 408 302 94 26 chr1 74528458 74528650 -207665014 - MIR SINE MIR -57 205 1 1215 223 26 7 chr1 74529240 74529550 -207664114 + MER33 DNA MER1_type 9 324 0 1220 126 0 113 chr1 74529837 74530084 -207663580 - MER20 DNA MER1_type 0 219 1 297 89 0 0 chr1 74530187 74530232 -207663432 + (TC)n Simple_repeat Simple_repeat 2 46 0 547 250 4 93 chr1 74530236 74530382 -207663282 + MLT1I LTR MaLR 195 314 -95 1656 168 81 31 chr1 74530382 74530739 -207662925 + THE1C LTR MaLR 1 375 0 547 250 4 93 chr1 74530739 74530828 -207662836 + MLT1I LTR MaLR 314 409 0 614 254 147 15 chr1 74530894 74531091 -207662573 + MIR SINE MIR 9 231 -31 833 230 11 5 chr1 74531288 74531475 -207662189 - MIR SINE MIR -1 261 74 678 308 72 16 chr1 74531734 74532121 -207661543 - L1ME LINE L1 -385 5777 5369 439 275 47 27 chr1 74532465 74532614 -207661050 - MIR SINE MIR -110 152 1 1448 204 72 3 chr1 74533614 74533932 -207659732 + MER58B DNA MER1_type 2 341 0 941 273 41 4 chr1 74535077 74535319 -207658345 - MIR SINE MIR 0 262 12 304 274 35 35 chr1 74535349 74535435 -207658229 + L1ME4a LINE L1 6004 6092 -29 2298 107 0 0 chr1 74535435 74535744 -207657920 - AluSx SINE Alu -3 309 1 304 274 35 35 chr1 74535744 74535770 -207657894 + L1ME4a LINE L1 6091 6116 -5 297 389 0 0 chr1 74536772 74536880 -207656784 + MIR SINE MIR 26 133 -129 1882 156 28 0 chr1 74537017 74537348 -207656316 - AluSx SINE Alu 0 342 4 222 271 260 21 chr1 74537572 74537668 -207655996 + MIR SINE MIR 37 155 -107 207 0 0 0 chr1 74537735 74537758 -207655906 + (A)n Simple_repeat Simple_repeat 1 23 0 1749 151 47 7 chr1 74538348 74538646 -207655018 - AluJb SINE Alu -2 310 1 226 349 0 0 chr1 74539089 74539152 -207654512 + L3 LINE CR1 1515 1577 0 197 311 193 19 chr1 74539171 74539383 -207654281 - MIR SINE MIR -12 250 2 263 350 62 69 chr1 74539464 74539624 -207654040 + L2 LINE L2 3105 3263 -9 254 274 186 0 chr1 74541053 74541166 -207652498 - MIR SINE MIR -25 237 104 287 56 0 0 chr1 74541182 74541218 -207652446 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 2375 81 3 3 chr1 74541575 74541871 -207651793 + AluSq SINE Alu 1 296 -17 233 297 14 14 chr1 74542207 74542281 -207651383 + MER5A DNA MER1_type 1 74 -115 404 299 91 0 chr1 74542283 74542470 -207651194 + L1MEc LINE L1 36 239 -6157 607 258 120 32 chr1 74542943 74543532 -207650132 + L1MEc LINE L1 634 1145 -5072 846 219 4 75 chr1 74543578 74543806 -207649858 - MER20 DNA MER1_type -7 212 1 1226 300 86 7 chr1 74543806 74544482 -207649182 + L1MEc LINE L1 1343 2071 -4325 305 242 0 42 chr1 74544493 74544588 -207649076 - L1MC4 LINE L1 -1339 6703 6613 1100 225 172 2 chr1 74544711 74545200 -207648464 + L1MEc LINE L1 2271 2842 -3373 276 185 0 0 chr1 74545642 74545696 -207647968 + (TG)n Simple_repeat Simple_repeat 1 54 0 201 211 56 14 chr1 74545813 74545884 -207647780 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 238 181 26 136 chr1 74546146 74546301 -207647363 - L1ME4a LINE L1 -114 6007 5870 569 268 30 45 chr1 74547836 74548034 -207645630 + MIR SINE MIR 3 197 -65 342 0 0 0 chr1 74548144 74548182 -207645482 + (CA)n Simple_repeat Simple_repeat 2 39 0 3851 182 34 6 chr1 74549360 74550073 -207643591 - MER44D DNA MER2_type 0 605 1 399 282 130 28 chr1 74550661 74550803 -207642861 - MIR SINE MIR -3 259 86 2029 185 0 21 chr1 74550803 74551176 -207642488 - MLT1A1 LTR MaLR 0 365 1 399 282 130 28 chr1 74551176 74551249 -207642415 - MIR SINE MIR -176 86 22 329 336 51 0 chr1 74552247 74552384 -207641280 - MIR SINE MIR -29 233 90 346 249 79 91 chr1 74552411 74552576 -207641088 + MER5A DNA MER1_type 2 164 -25 603 328 25 10 chr1 74552711 74552912 -207640752 - MIR SINE MIR -48 214 11 311 293 40 0 chr1 74553281 74553380 -207640284 + MIR3 SINE MIR 84 186 -22 314 281 245 7 chr1 74553888 74554027 -207639637 - MIR SINE MIR -18 244 73 353 295 101 23 chr1 74554086 74554215 -207639449 + MIR SINE MIR 29 167 -95 387 281 57 81 chr1 74554252 74554462 -207639202 - L2 LINE L2 0 3272 3068 323 339 63 0 chr1 74554537 74554664 -207639000 + L2 LINE L2 2415 2549 -765 482 290 124 66 chr1 74554766 74555208 -207638456 + L1MC4a LINE L1 6055 6522 -1286 1066 222 32 12 chr1 74555230 74555535 -207638129 + L1MC4 LINE L1 6615 6978 -1048 1203 161 164 24 chr1 74555542 74555840 -207637824 + MER2 DNA MER2_type 6 345 0 1605 200 108 35 chr1 74555937 74556391 -207637273 + L1MC5 LINE L1 6975 7489 -472 189 0 0 0 chr1 74556391 74556412 -207637252 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1605 200 108 35 chr1 74556412 74556586 -207637078 + L1MC5 LINE L1 7489 7649 -312 262 259 0 0 chr1 74556684 74556738 -207636926 - AluSc SINE Alu -113 186 133 474 200 95 70 chr1 74556739 74556939 -207636725 + L1MC5 LINE L1 7702 7906 -55 2765 92 3 13 chr1 74556987 74557366 -207636298 + THE1C LTR MaLR 1 375 0 593 244 30 37 chr1 74557951 74558115 -207635549 + MIR SINE MIR 50 212 -50 203 111 83 0 chr1 74559648 74559684 -207633980 + MIR SINE MIR 111 149 -113 412 284 95 37 chr1 74559989 74560179 -207633485 + MIR SINE MIR 62 262 0 1086 239 104 55 chr1 74560355 74560759 -207632905 + MLT1J LTR MaLR 1 434 -77 2241 78 3 0 chr1 74560759 74561065 -207632599 + AluY SINE Alu 1 307 0 1086 239 104 55 chr1 74561065 74561131 -207632533 + MLT1J LTR MaLR 434 495 -16 358 309 126 22 chr1 74561255 74561485 -207632179 + L3 LINE CR1 1035 1288 -289 265 275 130 0 chr1 74561482 74561551 -207632113 + MIR3 SINE MIR 104 181 -27 * 261 312 29 68 chr1 74561586 74561791 -207631873 + L3 LINE CR1 1299 1495 -82 214 332 37 24 chr1 74561843 74561945 -207631719 + MIR SINE MIR 1 108 -100 41 66 0 0 chr1 74561984 74562060 -207631604 + AT_rich Low_complexity Low_complexity 1 76 0 273 313 25 12 chr1 74562548 74562628 -207631036 - L2 LINE L2 -183 3089 3009 1146 193 91 30 chr1 74562869 74563200 -207630464 + L1MD2 LINE L1 6008 6358 -1 803 145 0 38 chr1 74563511 74563642 -207630022 + AluJ SINE Alu 1 126 -186 329 217 0 11 chr1 74563738 74563836 -207629828 - L1MC/D LINE L1 -328 5793 5695 185 296 230 30 chr1 74564300 74564435 -207629229 + L2 LINE L2 2887 3048 -224 320 180 33 0 chr1 74565251 74565312 -207628352 + MIR3 SINE MIR 98 160 -48 1740 135 29 122 chr1 74565451 74565835 -207627829 + MER7A DNA MER2_type 1 346 0 403 258 216 5 chr1 74565996 74566186 -207627478 - MIR SINE MIR -32 230 1 1328 158 9 18 chr1 74566597 74566818 -207626846 - MER20 DNA MER1_type 0 219 1 2012 121 0 7 chr1 74566867 74567182 -207626482 + AluSg1 SINE Alu 1 313 0 1044 171 0 6 chr1 74567182 74567358 -207626306 + AluJ SINE Alu 134 308 -4 555 274 33 93 chr1 74567508 74567618 -207626046 - MIR SINE MIR -4 258 143 1624 174 16 54 chr1 74567618 74567934 -207625730 + AluJb SINE Alu 1 304 -8 1946 146 164 11 chr1 74567944 74568315 -207625349 - MSTA LTR MaLR 0 428 1 555 274 33 93 chr1 74568315 74568463 -207625201 - MIR SINE MIR -128 134 5 405 237 72 14 chr1 74568494 74568633 -207625031 + L1ME4a LINE L1 5971 6117 -4 650 311 43 20 chr1 74568714 74568968 -207624696 + L1MC1 LINE L1 5441 5700 -2108 942 141 11 51 chr1 74569842 74570019 -207623645 + L1MC1 LINE L1 6164 6333 0 1665 158 24 24 chr1 74570029 74570326 -207623338 + AluJo SINE Alu 1 297 -15 802 352 61 9 chr1 74570472 74570932 -207622732 + L2 LINE L2 2830 3313 0 331 296 31 41 chr1 74571021 74571119 -207622545 - MIR3 SINE MIR -100 108 12 385 306 14 14 chr1 74571584 74571731 -207621933 + GA-rich Low_complexity Low_complexity 3 149 0 201 108 0 0 chr1 74571867 74571904 -207621760 + (T)n Simple_repeat Simple_repeat 1 37 0 195 185 111 0 chr1 74572587 74572641 -207621023 + MER5A DNA MER1_type 80 139 -50 2818 79 22 5 chr1 74572648 74573016 -207620648 - L1PA11 LINE L1 -1 6173 5800 856 143 198 51 chr1 74573141 74573378 -207620286 + ORSL DNA AcHobo 3 274 -1 196 350 171 24 chr1 74573457 74573703 -207619961 + L2 LINE L2 2809 3090 -182 288 320 139 42 chr1 74574075 74574484 -207619180 + HsTC2 DNA Tc2 491 939 -959 352 332 84 72 chr1 74574925 74575271 -207618393 - L2 LINE L2 -1 3271 2922 513 270 61 7 chr1 74575744 74575892 -207617772 + MIR SINE MIR 81 236 -26 235 160 0 60 chr1 74575990 74576040 -207617624 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 528 278 153 51 chr1 74576267 74576580 -207617084 + L3 LINE CR1 1162 1506 -71 2267 105 7 0 chr1 74576736 74577040 -207616624 + AluSx SINE Alu 1 306 -6 32 75 0 0 chr1 74577308 74577375 -207616289 + AT_rich Low_complexity Low_complexity 1 67 0 243 283 129 17 chr1 74577913 74578047 -207615617 + MIR SINE MIR 3 149 -59 1745 143 0 42 chr1 74578159 74578445 -207615219 + AluJb SINE Alu 1 274 -38 1908 135 11 0 chr1 74578445 74578719 -207614945 + AluSx SINE Alu 22 298 -14 352 180 281 36 chr1 74579527 74579666 -207613998 + L2 LINE L2 3091 3263 -9 2394 91 0 0 chr1 74580001 74580308 -207613356 + AluSx SINE Alu 3 309 -3 203 671 0 12 chr1 74581254 74581421 -207612243 + C-rich Low_complexity Low_complexity 1 165 0 23 0 0 0 chr1 74581956 74581979 -207611685 + AT_rich Low_complexity Low_complexity 1 23 0 270 209 0 66 chr1 74582288 74582379 -207611285 + G-rich Low_complexity Low_complexity 1 85 0 355 163 81 23 chr1 74583034 74583120 -207610544 + MER69 DNA AcHobo 2427 2517 -9 21 36 0 0 chr1 74583795 74583823 -207609841 + AT_rich Low_complexity Low_complexity 1 28 0 275 160 0 0 chr1 74584046 74584096 -207609568 + AluJb SINE Alu 251 300 -2 207 0 0 0 chr1 74584581 74584604 -207609060 + (TA)n Simple_repeat Simple_repeat 1 23 0 465 62 0 0 chr1 74584604 74584669 -207608995 + (GA)n Simple_repeat Simple_repeat 1 65 0 1811 111 107 4 chr1 74585276 74585546 -207608118 + AluSc SINE Alu 1 298 -11 620 265 12 18 chr1 74585553 74585723 -207607941 + MIR SINE MIR 45 213 -49 300 393 28 21 chr1 74585916 74586061 -207607603 + L2 LINE L2 3127 3272 0 359 185 92 81 chr1 74586133 74586306 -207607358 - MER112 DNA MER1_type -74 186 12 299 246 15 0 chr1 74586803 74586868 -207606796 + Charlie8 DNA MER1_type 2348 2413 -4 265 171 132 52 chr1 74587557 74587637 -207606027 - MIR SINE MIR -87 121 40 1987 98 23 0 chr1 74587781 74587871 -207605793 + AluSx SINE Alu 34 120 -192 207 0 0 0 chr1 74587871 74587894 -207605770 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1987 98 23 0 chr1 74587894 74588068 -207605596 + AluSx SINE Alu 120 304 -8 347 221 181 20 chr1 74588120 74588269 -207605395 - MER104 DNA Tc2 -4 176 4 317 237 0 0 chr1 74588378 74588437 -207605227 + L2 LINE L2 3213 3271 -1 1663 186 77 57 chr1 74588591 74588787 -207604877 - MSTD LTR MaLR 0 396 206 2894 19 0 0 chr1 74588787 74589104 -207604560 + AluYb8 SINE Alu 1 317 -1 1663 186 77 57 chr1 74589104 74589295 -207604369 - MSTD LTR MaLR -190 206 1 290 120 51 34 chr1 74589295 74589412 -207604252 + (TTATA)n Simple_repeat Simple_repeat 5 123 0 * 399 103 82 0 chr1 74589391 74589537 -207604127 + (TA)n Simple_repeat Simple_repeat 1 158 0 242 157 157 0 chr1 74589545 74589596 -207604068 + MER21A LTR ERV1 16 74 -857 234 91 0 0 chr1 74589605 74589638 -207604026 + (TC)n Simple_repeat Simple_repeat 1 33 0 3262 151 129 58 chr1 74589638 74590381 -207603283 + MER21A LTR ERV1 130 925 -6 902 207 113 129 chr1 74591006 74591503 -207602161 + MLT1J LTR MaLR 5 493 -18 2252 83 40 17 chr1 74591547 74591849 -207601815 - AluSq SINE Alu -2 311 3 422 306 92 6 chr1 74591889 74592062 -207601602 + MIR SINE MIR 74 261 -1 395 230 35 26 chr1 74592468 74592581 -207601083 - L1MC5 LINE L1 -30 7931 7818 3001 155 55 82 chr1 74593404 74594113 -207599551 - LTR8 LTR ERV1 -1 690 1 407 304 69 87 chr1 74594246 74594733 -207598931 + L2 LINE L2 2696 3253 -19 2416 74 3 3 chr1 74594733 74595032 -207598632 + AluSg SINE Alu 1 299 -11 407 304 69 87 chr1 74595032 74595052 -207598612 + L2 LINE L2 3253 3272 0 314 323 174 6 chr1 74595877 74596038 -207597626 + MIR SINE MIR 8 195 -67 316 271 0 0 chr1 74596436 74596506 -207597158 + MLT1K LTR MaLR 519 588 0 205 316 82 48 chr1 74596738 74596792 -207596872 - MIR SINE MIR -4 258 207 1472 147 77 45 chr1 74596792 74597105 -207596559 - MER33 DNA MER1_type -1 323 1 205 316 82 48 chr1 74597105 74597256 -207596408 - MIR SINE MIR -55 207 46 219 121 0 0 chr1 74597636 74597669 -207595995 + MIR SINE MIR 204 236 -26 599 219 0 80 chr1 74597946 74598133 -207595531 + MLT1H LTR MaLR 11 182 -367 * 1015 206 48 116 chr1 74598125 74598523 -207595141 + MLT1B LTR MaLR 16 386 -4 694 241 182 26 chr1 74598532 74598839 -207594825 + MLT1H LTR MaLR 167 521 -28 29 0 0 0 chr1 74598853 74598882 -207594782 + AT_rich Low_complexity Low_complexity 1 29 0 1837 179 0 13 chr1 74598884 74599186 -207594478 + AluJb SINE Alu 1 298 -14 192 40 0 0 chr1 74599273 74599298 -207594366 + (A)n Simple_repeat Simple_repeat 1 25 0 2404 102 0 3 chr1 74599301 74599615 -207594049 + AluSq SINE Alu 1 313 0 300 309 9 9 chr1 74599622 74599732 -207593932 + GA-rich Low_complexity Low_complexity 3 112 0 289 348 109 11 chr1 74599757 74599941 -207593723 + MIR SINE MIR 48 249 -13 306 274 120 52 chr1 74600195 74600286 -207593378 - L1MC4 LINE L1 -1 8041 7958 2064 147 3 0 chr1 74600286 74600585 -207593079 + AluSx SINE Alu 1 300 -12 306 274 120 52 chr1 74600585 74600818 -207592846 - L1MC4 LINE L1 -84 7958 7695 203 292 46 0 chr1 74600862 74600927 -207592737 - MIR SINE MIR -76 186 119 477 275 87 17 chr1 74601139 74601426 -207592238 + L1ME3A LINE L1 5021 5327 -819 358 206 0 0 chr1 74601426 74601494 -207592170 + MLT1A1 LTR MaLR 244 311 -54 2113 125 3 0 chr1 74601517 74601806 -207591858 + AluSq SINE Alu 9 298 -15 566 234 0 8 chr1 74601866 74601990 -207591674 - MLT1A2 LTR MaLR 0 374 252 2553 230 63 41 chr1 74601990 74602125 -207591539 + L1ME3A LINE L1 5343 5474 -696 2105 125 3 3 chr1 74602125 74602420 -207591244 + AluSg SINE Alu 1 295 -15 2553 230 63 41 chr1 74602420 74603057 -207590607 + L1ME3A LINE L1 5474 6132 -38 830 239 47 5 chr1 74603460 74603673 -207589991 + HAL1 LINE L1 373 594 -1913 1807 174 0 7 chr1 74603717 74604015 -207589649 + AluJb SINE Alu 3 298 -14 204 184 0 0 chr1 74604485 74604534 -207589130 + (CTCA)n Simple_repeat Simple_repeat 3 51 0 548 296 111 22 chr1 74604640 74604866 -207588798 + MIR SINE MIR 2 247 -15 1904 168 3 3 chr1 74605072 74605370 -207588294 + AluJo SINE Alu 1 298 -14 1890 157 7 0 chr1 74605652 74605951 -207587713 + AluSx SINE Alu 5 305 -7 22 35 0 0 chr1 74606543 74606572 -207587092 + AT_rich Low_complexity Low_complexity 1 29 0 2436 80 3 0 chr1 74606631 74606931 -207586733 + AluSq SINE Alu 1 301 -12 3598 209 48 36 chr1 74607747 74608650 -207585014 + L1MD2 LINE L1 5435 6347 -12 390 324 45 9 chr1 74608685 74608796 -207584868 - L2 LINE L2 -13 3259 3145 247 241 0 0 chr1 74608989 74609043 -207584621 + MLT1K LTR MaLR 5 58 -530 1525 187 20 10 chr1 74609396 74609701 -207583963 + AluJb SINE Alu 2 309 -3 2372 93 0 0 chr1 74609711 74610012 -207583652 + AluY SINE Alu 1 301 -10 1796 142 114 0 chr1 74610026 74610342 -207583322 + L1MB7 LINE L1 5814 6165 -19 1843 146 31 0 chr1 74610392 74610680 -207582984 + AluSx SINE Alu 1 297 -15 237 278 117 19 chr1 74611312 74611474 -207582190 + L1ME4a LINE L1 5935 6112 -9 479 235 24 118 chr1 74611480 74611650 -207582014 - MIR SINE MIR -17 245 92 209 268 0 0 chr1 74612013 74612054 -207581610 + (TG)n Simple_repeat Simple_repeat 2 42 0 28 48 0 0 chr1 74612084 74612126 -207581538 + AT_rich Low_complexity Low_complexity 1 42 0 385 307 52 62 chr1 74612770 74612962 -207580702 + MIR3 SINE MIR 14 203 -5 520 183 99 23 chr1 74612979 74613110 -207580554 - L1ME3A LINE L1 -8 6162 6022 2588 138 39 82 chr1 74613533 74614092 -207579572 + LTR36 LTR ERV1 1 535 -76 3605 250 95 86 chr1 74615233 74615437 -207578227 + L1MEc LINE L1 786 987 -5228 2001 119 53 0 chr1 74615437 74615722 -207577942 + AluSx SINE Alu 1 300 -12 3605 250 95 86 chr1 74615722 74617002 -207576662 + L1MEc LINE L1 987 2254 -3961 2360 102 0 16 chr1 74617002 74617317 -207576347 + AluSx SINE Alu 1 310 -2 3605 250 95 86 chr1 74617317 74618009 -207575655 + L1MEc LINE L1 2254 2938 -3277 2160 109 10 7 chr1 74618009 74618302 -207575362 - AluSg SINE Alu -16 294 1 3605 250 95 86 chr1 74618302 74618779 -207574885 + L1MEc LINE L1 2938 3409 -2806 826 163 0 0 chr1 74618779 74618902 -207574762 + FLAM_C SINE Alu 1 123 -20 3605 250 95 86 chr1 74618902 74619727 -207573937 + L1MEc LINE L1 3409 4225 -1990 2129 117 3 16 chr1 74619727 74620036 -207573628 - AluSx SINE Alu -7 305 1 3605 250 95 86 chr1 74620036 74620077 -207573587 + L1MEc LINE L1 4225 4264 -1951 2226 149 31 43 chr1 74620077 74620500 -207573164 + L1MA7 LINE L1 5874 6291 0 3605 250 95 86 chr1 74620500 74620548 -207573116 + L1MEc LINE L1 4264 4482 -1733 23 33 0 0 chr1 74620613 74620643 -207573021 + AT_rich Low_complexity Low_complexity 1 30 0 2120 128 0 13 chr1 74620643 74620956 -207572708 + AluSx SINE Alu 2 310 -2 943 256 140 23 chr1 74621227 74621861 -207571803 - MER20B DNA MER1_type -38 745 1 2175 112 7 0 chr1 74622236 74622532 -207571132 - AluSx SINE Alu -14 298 1 318 281 269 0 chr1 74623004 74623164 -207570500 + MIR SINE MIR 47 249 -13 243 61 0 0 chr1 74623701 74623734 -207569930 + (CA)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr1 74623916 74623942 -207569722 + (TC)n Simple_repeat Simple_repeat 2 27 0 533 274 105 57 chr1 74624011 74624259 -207569405 + MER112 DNA MER1_type 1 260 0 357 314 48 8 chr1 74624267 74624391 -207569273 - MIR SINE MIR -60 148 20 2476 74 0 0 chr1 74624423 74624722 -207568942 + AluSx SINE Alu 1 299 -13 407 259 54 9 chr1 74627110 74627222 -207566442 - L2 LINE L2 -1 3271 3155 501 251 211 26 chr1 74627483 74627710 -207565954 - L2 LINE L2 0 3313 3045 487 267 99 5 chr1 74628036 74628235 -207565429 + MIR SINE MIR 43 262 0 248 239 99 42 chr1 74628687 74628758 -207564906 - L2 LINE L2 -39 3274 3200 669 300 8 39 chr1 74628824 74628868 -207564796 + MIR SINE MIR 6 50 -212 1384 178 30 36 chr1 74628868 74629171 -207564493 + AluJb SINE Alu 1 301 -11 669 300 8 39 chr1 74629171 74629384 -207564280 + MIR SINE MIR 50 253 -9 279 216 137 10 chr1 74629396 74629498 -207564166 + MIR SINE MIR 75 189 -73 2103 55 0 0 chr1 74629583 74629838 -207563826 - L1MA2 LINE L1 0 6304 6050 626 231 151 10 chr1 74631192 74631391 -207562273 + MIR SINE MIR 8 234 -28 290 268 71 45 chr1 74631422 74631534 -207562130 - MIR SINE MIR -60 148 34 302 339 50 16 chr1 74631596 74631717 -207561947 - MIR SINE MIR -116 146 22 750 157 14 175 chr1 74631729 74631952 -207561712 - MER5A DNA MER1_type 0 189 3 801 281 68 39 chr1 74632678 74633063 -207560601 + L1MC/D LINE L1 5257 5652 -2156 236 268 0 0 chr1 74633135 74633191 -207560473 - L2 LINE L2 -2 3270 3215 199 321 54 18 chr1 74633701 74633813 -207559851 - MIR SINE MIR -68 194 79 301 324 9 19 chr1 74634076 74634181 -207559483 + MIR SINE MIR 60 163 -99 2105 89 10 17 chr1 74634475 74634768 -207558896 + L1PA10 LINE L1 5878 6168 0 2226 110 3 0 chr1 74634974 74635275 -207558389 - AluSx SINE Alu -10 302 1 190 320 31 10 chr1 74635882 74635979 -207557685 - L2 LINE L2 -226 3046 2948 269 191 167 119 chr1 74635991 74636242 -207557422 + L2 LINE L2 2713 2975 -339 194 214 301 0 chr1 74636360 74636463 -207557201 + L2 LINE L2 3180 3313 0 300 279 134 88 chr1 74636902 74637335 -207556329 + L1M2 LINE L1 534 986 -5863 260 222 150 20 chr1 74637590 74637717 -207555947 - MIR SINE MIR -13 249 104 338 307 131 7 chr1 74637831 74637968 -207555696 - MIR SINE MIR 0 262 109 246 125 50 0 chr1 74638009 74638049 -207555615 - MER116 DNA Mariner 0 80 39 1288 229 32 91 chr1 74638074 74638104 -207555560 + L1MC4 LINE L1 7366 7396 -646 1637 174 16 3 chr1 74638104 74638228 -207555436 + AluJo SINE Alu 4 125 -187 324 48 0 0 chr1 74638228 74638270 -207555394 + (CA)n Simple_repeat Simple_repeat 1 42 0 1637 174 16 3 chr1 74638270 74638450 -207555214 + AluJo SINE Alu 125 312 0 1288 229 32 91 chr1 74638450 74638694 -207554970 + L1MC4 LINE L1 7396 7653 -389 2287 92 27 0 chr1 74638694 74638987 -207554677 + AluSx SINE Alu 1 301 -11 1288 229 32 91 chr1 74638987 74639111 -207554553 + L1MC4 LINE L1 7653 7731 -311 180 111 0 0 chr1 74639111 74639138 -207554526 + (TA)n Simple_repeat Simple_repeat 2 28 0 1288 229 32 91 chr1 74639138 74639243 -207554421 + L1MC4 LINE L1 7731 7841 -201 758 153 8 38 chr1 74639248 74639379 -207554285 + AluSq/x SINE Alu 8 134 -179 236 313 0 0 chr1 74639397 74639464 -207554200 + L1MC4 LINE L1 7824 7890 -152 4600 183 75 25 chr1 74639494 74640096 -207553568 + L1MD1 LINE L1 4700 5271 -971 2054 144 3 0 chr1 74640096 74640388 -207553276 + AluSx SINE Alu 4 296 -16 4600 183 75 25 chr1 74640388 74641251 -207552413 + L1MD1 LINE L1 5271 6235 -7 2316 96 0 0 chr1 74641315 74641607 -207552057 + AluSc SINE Alu 1 292 -17 1259 165 60 9 chr1 74641854 74642072 -207551592 + AluJb SINE Alu 9 237 -75 887 201 6 6 chr1 74642176 74642355 -207551309 - L1MB7 LINE L1 -36 6148 5970 620 262 80 71 chr1 74642651 74642975 -207550689 - L2 LINE L2 0 3272 2946 782 319 122 32 chr1 74642983 74643806 -207549858 - L2 LINE L2 0 3313 2411 2335 92 0 3 chr1 74643806 74644101 -207549563 + AluSc SINE Alu 1 294 -15 340 221 58 0 chr1 74644297 74644383 -207549281 - MIR SINE MIR -108 154 64 1639 145 52 7 chr1 74644383 74644672 -207548992 + AluJo SINE Alu 3 304 -8 728 143 0 34 chr1 74644875 74644994 -207548670 - AluJo SINE Alu -161 151 37 913 181 68 63 chr1 74645033 74645254 -207548410 + MER58A DNA MER1_type 3 224 0 25 31 0 0 chr1 74645275 74645307 -207548357 + AT_rich Low_complexity Low_complexity 1 32 0 250 298 29 19 chr1 74645464 74645568 -207548096 + MIR3 SINE MIR 97 201 -7 24 0 0 0 chr1 74646076 74646100 -207547564 + AT_rich Low_complexity Low_complexity 1 24 0 597 323 61 27 chr1 74646166 74646571 -207547093 - L2 LINE L2 -160 3153 2731 182 335 110 47 chr1 74648068 74648259 -207545405 - L2 LINE L2 -413 2901 2699 393 262 0 0 chr1 74649425 74649509 -207544155 + MER5A DNA MER1_type 12 95 -94 992 139 100 57 chr1 74649760 74650040 -207543624 + L1MA7 LINE L1 6000 6291 0 1872 179 47 14 chr1 74651054 74651417 -207542247 + THE1C LTR MaLR 1 375 0 2491 166 14 21 chr1 74651537 74651964 -207541700 + Tigger2a DNA MER2_type 1 424 -10 271 338 89 55 chr1 74652135 74652298 -207541366 + L2 LINE L2 1913 2088 -1226 1942 178 43 94 chr1 74652298 74652788 -207540876 - MLT1C LTR MaLR -2 465 1 271 338 89 55 chr1 74652788 74652861 -207540803 + L2 LINE L2 2088 2157 -1157 1859 179 40 63 chr1 74653212 74653609 -207540055 + MLT1B LTR MaLR 3 390 0 830 284 199 10 chr1 74653621 74654023 -207539641 - L2 LINE L2 -18 3295 2818 243 125 0 0 chr1 74654132 74654172 -207539492 + (GA)n Simple_repeat Simple_repeat 1 40 0 9001 184 45 17 chr1 74654174 74654938 -207538726 + L1MC3 LINE L1 5874 6615 -1170 333 0 0 0 chr1 74654938 74654975 -207538689 + (CA)n Simple_repeat Simple_repeat 2 38 0 9001 184 45 17 chr1 74654975 74656070 -207537594 + L1MC3 LINE L1 6615 7785 0 465 222 74 9 chr1 74656077 74656185 -207537479 + MER5B DNA MER1_type 64 178 0 911 290 162 16 chr1 74656579 74657006 -207536658 + LTR33 LTR ERVL 33 521 0 2504 139 53 59 chr1 74657794 74658202 -207535462 - L1MA7 LINE L1 -1 6290 5884 2140 119 0 0 chr1 74658202 74658488 -207535176 - AluSx SINE Alu -22 290 5 2504 139 53 59 chr1 74658488 74658590 -207535074 - L1MA7 LINE L1 -407 5884 5783 321 135 0 0 chr1 74658601 74658653 -207535011 + (TA)n Simple_repeat Simple_repeat 1 52 0 228 174 0 0 chr1 74658654 74658700 -207534964 - LTR66 LTR ERVL -171 439 394 1481 153 54 51 chr1 74658717 74659030 -207534634 - L1MA7 LINE L1 -523 5768 5455 2509 61 3 3 chr1 74660576 74660886 -207532778 - AluY SINE Alu -1 310 1 457 179 119 0 chr1 74662493 74662577 -207531087 - FLAM_A SINE Alu -23 119 26 994 131 42 6 chr1 74662582 74662750 -207530914 + L1MB5 LINE L1 5731 5904 -270 823 73 18 0 chr1 74662762 74662872 -207530792 + AluSg/x SINE Alu 177 288 -22 230 285 139 7 chr1 74662872 74663016 -207530648 - L2 LINE L2 -110 3203 3041 1114 272 18 14 chr1 74663053 74663329 -207530335 - AluJo SINE Alu -35 277 1 189 0 0 0 chr1 74663332 74663353 -207530311 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr1 74663394 74663417 -207530247 + AT_rich Low_complexity Low_complexity 1 23 0 2468 76 0 0 chr1 74663488 74663791 -207529873 + AluSc SINE Alu 1 303 -6 587 209 29 0 chr1 74664483 74664622 -207529042 + L1M4 LINE L1 4720 4862 -1284 254 208 0 0 chr1 74664665 74664713 -207528951 - L2 LINE L2 -87 3226 3179 2379 86 0 35 chr1 74664753 74665067 -207528597 + AluSq SINE Alu 1 303 -10 1156 110 6 39 chr1 74665067 74665249 -207528415 + AluSg/x SINE Alu 137 312 0 901 228 120 67 chr1 74665452 74666066 -207527598 - L2 LINE L2 0 3313 2674 23 0 0 0 chr1 74667381 74667404 -207526260 + AT_rich Low_complexity Low_complexity 1 23 0 1811 137 30 76 chr1 74667437 74667830 -207525834 + MER4E LTR ERV1 405 779 0 310 254 49 8 chr1 74667830 74667952 -207525712 + L1ME3A LINE L1 6036 6162 -8 242 299 64 16 chr1 74668303 74668490 -207525174 + L1M4 LINE L1 4168 4363 -1783 856 133 0 0 chr1 74668492 74668612 -207525052 + FLAM_C SINE Alu 3 122 -11 31 0 0 0 chr1 74668653 74668684 -207524980 + AT_rich Low_complexity Low_complexity 1 31 0 879 143 18 69 chr1 74668923 74669139 -207524525 + LTR49 LTR ERV1 5 200 -395 2094 16 0 0 chr1 74669175 74669428 -207524236 - L1HS LINE L1 0 6155 5903 519 193 67 107 chr1 74669433 74669797 -207523867 + LTR48 LTR ERV1 207 756 -24 21 0 0 0 chr1 74669944 74669965 -207523699 + AT_rich Low_complexity Low_complexity 1 21 0 182 330 99 33 chr1 74670110 74670201 -207523463 - MIR SINE MIR -79 129 33 264 333 35 0 chr1 74670272 74670359 -207523305 + MER94 DNA DNA 22 111 -23 799 222 23 3 chr1 74671293 74671512 -207522152 - L1M4 LINE L1 -491 5683 5460 1374 118 23 5 chr1 74671512 74671732 -207521932 - MER41B LTR ERV1 -262 373 150 597 252 29 0 chr1 74671744 74671954 -207521710 - L1M4 LINE L1 -743 5403 5188 790 178 41 86 chr1 74671993 74672054 -207521610 - L1M4 LINE L1 -943 5203 5141 1985 123 0 0 chr1 74672054 74672323 -207521341 - AluJb SINE Alu -18 294 26 790 178 41 86 chr1 74672323 74672575 -207521089 - L1M4 LINE L1 -1005 5141 4904 * 4622 236 17 16 chr1 74672571 74672740 -207520924 - L1M4 LINE L1 -1605 4541 4374 1537 175 0 31 chr1 74672740 74673026 -207520638 - AluJb SINE Alu -4 308 32 4622 236 17 16 chr1 74673026 74674099 -207519565 - L1M4 LINE L1 -1772 4374 3295 1909 145 47 0 chr1 74674099 74674396 -207519268 - AluSx SINE Alu -1 311 1 4622 236 17 16 chr1 74674396 74674481 -207519183 - L1M4 LINE L1 -2851 3295 3212 246 186 97 21 chr1 74674894 74675039 -207518625 - L1M4 LINE L1 -2912 3234 3079 412 358 34 0 chr1 74675186 74675390 -207518274 - MIR SINE MIR -13 249 39 325 312 32 16 chr1 74676717 74676842 -207516822 + L3 LINE CR1 984 1110 -467 181 344 0 0 chr1 74677036 74677097 -207516567 + L3 LINE CR1 1171 1231 -346 241 229 0 0 chr1 74677447 74677495 -207516169 + L3 LINE CR1 1246 1293 -284 210 191 0 0 chr1 74677833 74677875 -207515789 + (TA)n Simple_repeat Simple_repeat 2 43 0 514 261 164 18 chr1 74677886 74678051 -207515613 - MER5A DNA MER1_type 0 189 1 370 260 100 0 chr1 74678055 74678155 -207515509 + L3 LINE CR1 1392 1501 -76 460 164 19 19 chr1 74678155 74678259 -207515405 + L1MC3 LINE L1 7666 7769 -16 1660 171 23 13 chr1 74678262 74678566 -207515098 - AluJb SINE Alu -5 307 1 5678 147 27 7 chr1 74678661 74679956 -207513708 - L1MA5 LINE L1 -8 6292 4983 743 76 85 8 chr1 74681194 74681312 -207512352 + L1MB2 LINE L1 6043 6169 -2 766 105 9 0 chr1 74681883 74681997 -207511667 + L1PA10 LINE L1 6049 6163 -5 23 0 0 0 chr1 74681997 74682020 -207511644 + AT_rich Low_complexity Low_complexity 1 23 0 258 277 60 12 chr1 74682385 74682468 -207511196 + L2 LINE L2 3225 3311 -2 663 285 37 19 chr1 74684659 74684884 -207508780 - MIR SINE MIR -16 246 16 5220 144 7 9 chr1 74685141 74686228 -207507436 + L1MA3 LINE L1 5053 6139 -166 1820 182 13 16 chr1 74686228 74686541 -207507123 + AluJo SINE Alu 1 312 0 1132 97 17 0 chr1 74686541 74686597 -207507067 + (GAAA)n Simple_repeat Simple_repeat 1 235 0 1132 97 17 0 chr1 74686597 74686773 -207506891 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 777 92 16 49 chr1 74686797 74686981 -207506683 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 823 121 36 24 chr1 74686981 74687146 -207506518 + L1MA3 LINE L1 6139 6305 0 257 186 17 0 chr1 74687325 74687384 -207506280 + (TA)n Simple_repeat Simple_repeat 1 60 0 216 277 12 48 chr1 74687747 74687830 -207505834 + L3 LINE CR1 879 958 -619 366 279 0 19 chr1 74688488 74688592 -207505072 - L2 LINE L2 0 3272 3171 352 341 141 20 chr1 74688596 74688895 -207504769 + L3 LINE CR1 1231 1565 -12 395 250 74 54 chr1 74689433 74689581 -207504083 + MIR SINE MIR 108 258 -4 320 304 43 0 chr1 74689665 74689757 -207503907 - MIR SINE MIR -123 139 44 213 269 58 0 chr1 74690603 74690655 -207503009 - L2 LINE L2 -22 3291 3237 808 197 0 0 chr1 74690700 74690832 -207502832 + FLAM_C SINE Alu 1 132 -11 496 200 0 0 chr1 74690837 74690927 -207502737 + AluJ/FRAM SINE Alu 220 309 -3 557 288 162 32 chr1 74690928 74691288 -207502376 - L2 LINE L2 -151 3162 2772 268 161 16 0 chr1 74691476 74691538 -207502126 - L1MC/D LINE L1 -2333 5475 5413 397 265 134 68 chr1 74691575 74691852 -207501812 - L1MC/D LINE L1 -841 5305 5048 2382 94 0 7 chr1 74691852 74692151 -207501513 - AluSg SINE Alu -13 297 1 397 265 134 68 chr1 74692151 74692711 -207500953 - L1MC/D LINE L1 -1098 5048 4386 231 36 0 0 chr1 74692711 74692739 -207500925 + (TG)n Simple_repeat Simple_repeat 2 29 0 397 265 134 68 chr1 74692739 74692919 -207500745 - L1MC/D LINE L1 -1760 4386 4219 289 251 119 36 chr1 74693096 74693315 -207500349 - L1MC/D LINE L1 -2312 3834 3598 1997 172 20 35 chr1 74693526 74693922 -207499742 + MLT1B LTR MaLR 1 390 0 544 230 9 0 chr1 74694053 74694166 -207499498 + MIR SINE MIR 36 149 -113 266 258 82 0 chr1 74694225 74694322 -207499342 - L1MC/D LINE L1 -3132 3014 2910 256 24 24 24 chr1 74694905 74694947 -207498717 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 480 228 80 43 chr1 74695363 74695525 -207498139 + MIR SINE MIR 59 226 -36 348 308 112 0 chr1 74695598 74695741 -207497923 + MIR3 SINE MIR 32 190 -18 228 329 0 14 chr1 74696606 74696679 -207496985 - MIR3 SINE MIR -125 83 12 481 242 16 16 chr1 74697429 74697553 -207496111 - L2 LINE L2 0 3313 3190 196 231 77 60 chr1 74698102 74698219 -207495445 + MIR SINE MIR 144 262 0 406 298 44 0 chr1 74698400 74698514 -207495150 + L2 LINE L2 3147 3265 -7 1956 142 3 7 chr1 74698820 74699123 -207494541 - AluJb SINE Alu -10 302 1 229 342 0 13 chr1 74699539 74699618 -207494046 - MLT1K LTR MaLR -497 91 14 2447 86 0 3 chr1 74699827 74700131 -207493533 - AluSg SINE Alu -7 303 1 482 271 17 8 chr1 74700797 74700915 -207492749 + L3 LINE CR1 635 753 -824 547 305 128 0 chr1 74701070 74701296 -207492368 - MIR SINE MIR 0 262 8 265 276 71 16 chr1 74701618 74701745 -207491919 + MIR SINE MIR 111 244 -18 544 274 132 24 chr1 74701765 74701977 -207491687 + L3 LINE CR1 1334 1568 -9 297 0 0 0 chr1 74702208 74702241 -207491423 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr1 74702380 74702406 -207491258 + AT_rich Low_complexity Low_complexity 1 26 0 306 0 0 0 chr1 74702411 74702445 -207491219 + (TG)n Simple_repeat Simple_repeat 2 35 0 285 297 42 25 chr1 74703051 74703169 -207490495 + L2 LINE L2 2936 3055 -217 191 322 11 44 chr1 74703555 74703645 -207490019 + L2 LINE L2 3168 3254 -18 281 264 68 27 chr1 74703831 74703979 -207489685 + MARNA DNA Mariner 150 303 -283 505 243 32 120 chr1 74705784 74706068 -207487596 + MER102b DNA MER1_type 75 333 -8 1051 168 92 62 chr1 74706369 74706673 -207486991 - L1MC3 LINE L1 0 7785 7473 34199 102 10 20 chr1 74706686 74712886 -207480778 + L1PA6 LINE L1 11 6143 -11 1087 202 86 0 chr1 74712901 74713144 -207480520 - L1MC3 LINE L1 -321 7464 7201 241 284 32 11 chr1 74713145 74713240 -207480424 - MLT1F1 LTR MaLR -436 131 35 1505 171 56 35 chr1 74713240 74713614 -207480050 - L1MC3 LINE L1 -688 7097 6716 2126 130 10 0 chr1 74713614 74713922 -207479742 + AluSx SINE Alu 1 311 -1 1629 127 154 0 chr1 74714019 74714286 -207479378 - AluSg SINE Alu -2 308 1 441 203 85 8 chr1 74714561 74714679 -207478985 + MIR SINE MIR 21 147 -115 666 309 129 29 chr1 74714680 74715098 -207478566 - L2 LINE L2 0 3313 2854 597 262 22 11 chr1 74715189 74715372 -207478292 + LTR41 LTR ERVL 3 187 -586 446 150 12 0 chr1 74715806 74715886 -207477778 + L1MCb LINE L1 858 938 -5107 2273 176 54 28 chr1 74715887 74716637 -207477027 + L1MCb LINE L1 1203 2057 -4507 867 196 59 18 chr1 74717140 74717359 -207476305 + L1PB4 LINE L1 5924 6151 -5 1153 134 31 0 chr1 74717372 74717596 -207476068 + L1MCb LINE L1 1199 1429 -5135 * 2523 206 44 11 chr1 74717578 74718581 -207475083 + L1MCb LINE L1 2037 3072 -3492 * 21497 41 46 3 chr1 74718580 74721419 -207472245 + L1PA3 LINE L1 1 2960 -3186 18343 30 0 0 chr1 74721519 74724498 -207469166 + L1PA3 LINE L1 3171 6151 -4 1513 237 35 2 chr1 74724535 74724966 -207468698 + L1MCb LINE L1 3065 3509 -3055 1790 194 25 43 chr1 74725071 74725510 -207468154 + MLT1C LTR MaLR 37 467 0 194 349 70 54 chr1 74726084 74726382 -207467282 - L2 LINE L2 -961 2353 2051 573 287 69 10 chr1 74726910 74727112 -207466552 - MIR SINE MIR -48 214 1 575 298 53 22 chr1 74727267 74727492 -207466172 + L3 LINE CR1 1301 1532 -45 1310 200 20 88 chr1 74727546 74727946 -207465718 - MLT1A2 LTR MaLR 0 374 2 28803 25 0 0 chr1 74728135 74732521 -207461143 + L1PA3 LINE L1 1788 6173 0 398 171 0 0 chr1 74732521 74732597 -207461067 - L1MB4 LINE L1 -325 5855 5780 10359 85 2 3 chr1 74732601 74734847 -207458817 + L1PA7 LINE L1 3883 6154 0 196 254 18 0 chr1 74734899 74734954 -207458710 + L2 LINE L2 3257 3312 -1 27 0 0 0 chr1 74735766 74735793 -207457871 + AT_rich Low_complexity Low_complexity 1 27 0 32 57 0 0 chr1 74736078 74736131 -207457533 + AT_rich Low_complexity Low_complexity 1 53 0 1897 156 32 0 chr1 74736185 74736467 -207457197 + AluSx SINE Alu 1 291 -21 6613 164 9 5 chr1 74736670 74737977 -207455687 - L1MB4 LINE L1 -965 5181 3869 225 234 0 16 chr1 74738793 74738857 -207454807 - MLT1K LTR MaLR -11 577 515 354 113 0 0 chr1 74739478 74739540 -207454124 + Alu SINE Alu 241 302 0 632 115 0 10 chr1 74739543 74739647 -207454017 - L1MC3 LINE L1 -18 7767 7665 327 303 101 0 chr1 74739647 74739746 -207453918 - L3 LINE CR1 -77 1500 1392 495 278 167 0 chr1 74739750 74739912 -207453752 + MER5A DNA MER1_type 1 189 0 378 0 0 0 chr1 74739937 74739979 -207453685 + (CA)n Simple_repeat Simple_repeat 2 43 0 1672 153 86 3 chr1 74740382 74740708 -207452956 - MSTA LTR MaLR 0 428 76 1033 106 6 0 chr1 74740703 74740864 -207452800 - MSTA LTR MaLR -266 162 1 * 353 273 118 12 chr1 74742957 74743118 -207450546 - L1ME4a LINE L1 0 6121 5944 2197 75 0 38 chr1 74744670 74744956 -207448708 + AluSg SINE Alu 11 286 -19 219 36 0 0 chr1 74744956 74744984 -207448680 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 860 298 39 41 chr1 74746160 74746522 -207447142 - L3 LINE CR1 -4 1573 1213 1683 243 17 90 chr1 74746694 74747336 -207446328 - MLT1-int LTR MaLR -492 879 285 989 114 23 19 chr1 74747363 74747669 -207445995 + CT-rich Low_complexity Low_complexity 1 307 0 479 261 58 16 chr1 74747669 74747689 -207445975 - MLT1-int LTR MaLR -1054 317 299 1768 174 0 0 chr1 74747689 74747965 -207445699 - AluJb SINE Alu -36 276 1 479 261 58 16 chr1 74747965 74748132 -207445532 - MLT1-int LTR MaLR -1072 299 122 1425 194 3 58 chr1 74748204 74748365 -207445299 - AluJo SINE Alu -32 280 140 2275 78 3 0 chr1 74748365 74748678 -207444986 - AluY SINE Alu 0 314 1 1425 194 3 58 chr1 74748678 74748809 -207444855 - AluJo SINE Alu -172 140 3 3149 110 26 16 chr1 74748815 74749090 -207444574 + MER75 DNA T2_type 8 292 -222 3412 120 10 2 chr1 74749090 74749597 -207444067 - MER9 LTR ERVK 0 511 1 3149 110 26 16 chr1 74749597 74749823 -207443841 + MER75 DNA T2_type 292 514 0 478 260 100 0 chr1 74749877 74750027 -207443637 - MLT2C1 LTR ERVL -220 177 13 1418 109 0 0 chr1 74750333 74750516 -207443148 + AluSq SINE Alu 1 183 -130 269 266 25 0 chr1 74750888 74750967 -207442697 + MLT1K LTR MaLR 164 244 -344 191 229 0 0 chr1 74751570 74751605 -207442059 + L2 LINE L2 3180 3214 -99 2124 146 7 0 chr1 74751816 74752125 -207441539 - AluSx SINE Alu 0 312 2 1283 223 157 27 chr1 74752257 74752702 -207440962 + MLT1D LTR MaLR 1 503 -2 285 297 28 104 chr1 74753523 74753705 -207439959 - L3 LINE CR1 -6 1571 1404 379 316 139 68 chr1 74753829 74754377 -207439287 + L1M2 LINE L1 657 1243 -5606 21 0 0 0 chr1 74754495 74754516 -207439148 + GC_rich Low_complexity Low_complexity 1 21 0 380 324 40 14 chr1 74755149 74755297 -207438367 + MIR3 SINE MIR 30 181 -27 36 62 0 0 chr1 74757049 74757113 -207436551 + AT_rich Low_complexity Low_complexity 1 64 0 2089 108 0 24 chr1 74757329 74757624 -207436040 - AluSg SINE Alu -22 288 1 1251 360 7 52 chr1 74757750 74758058 -207435606 + AluSg1 SINE Alu 1 294 -15 293 116 0 0 chr1 74758058 74758101 -207435563 + (GGGA)n Simple_repeat Simple_repeat 1 43 0 3712 250 56 66 chr1 74758101 74758846 -207434818 + L2 LINE L2 1785 2536 -777 4216 76 7 0 chr1 74758846 74759396 -207434268 - MER41A LTR ERV1 0 554 1 3712 250 56 66 chr1 74759396 74760193 -207433471 + L2 LINE L2 2536 3310 -3 230 164 0 33 chr1 74760286 74760347 -207433317 + CT-rich Low_complexity Low_complexity 2 60 0 388 286 172 37 chr1 74760347 74760644 -207433020 - L1ME LINE L1 -435 5798 5462 370 169 0 0 chr1 74760647 74760712 -207432952 - MLT1I LTR MaLR -1 408 344 2663 164 26 25 chr1 74760982 74761550 -207432114 + L1MB7 LINE L1 5616 6184 0 596 271 60 47 chr1 74761557 74762007 -207431657 + L1M4 LINE L1 4316 4771 -1375 400 264 80 6 chr1 74762120 74762283 -207431381 - L1ME LINE L1 -3091 3124 2950 389 294 15 0 chr1 74762293 74762490 -207431174 - L1ME LINE L1 -3712 2503 2304 266 276 103 20 chr1 74762497 74762848 -207430816 - L1ME LINE L1 -3991 2405 2026 457 287 120 23 chr1 74762960 74763176 -207430488 - L2 LINE L2 0 3313 3077 1555 171 62 7 chr1 74763904 74764178 -207429486 - AluJo SINE Alu -23 289 1 1602 262 77 23 chr1 74764530 74764572 -207429092 - HsTC2a DNA Tc2 -1162 738 700 2009 171 25 43 chr1 74764572 74765012 -207428652 + MSTB1 LTR MaLR 1 432 0 1602 262 77 23 chr1 74765012 74765667 -207427997 - HsTC2a DNA Tc2 -1200 700 3 357 369 12 6 chr1 74766939 74767107 -207426557 - HAL1 LINE L1 -726 1781 1613 309 314 65 24 chr1 74767108 74767398 -207426266 - HAL1 LINE L1 -904 1603 1302 814 302 92 52 chr1 74767413 74767990 -207425674 - HAL1 LINE L1 -1160 1347 748 575 254 12 0 chr1 74768398 74768567 -207425097 + LTR67 LTR ERVL 363 533 -24 2283 153 28 5 chr1 74768812 74769211 -207424453 + MSTB LTR MaLR 1 408 -18 42227 38 1 2 chr1 74769741 74775905 -207417759 - L1PA2 LINE L1 0 6155 1 19590 127 14 88 chr1 74775906 74780113 -207413551 - L1P LINE L1 -2250 3896 1 2136 173 14 3 chr1 74780903 74781262 -207412402 + MLT1A1 LTR MaLR 1 363 -2 199 208 28 56 chr1 74781625 74781697 -207411967 - L2 LINE L2 -216 3097 3028 * 453 236 98 23 chr1 74781689 74781863 -207411801 - L2 LINE L2 -452 2862 2676 613 284 96 31 chr1 74781864 74782093 -207411571 - L2 LINE L2 -587 2727 2484 2196 130 0 0 chr1 74782355 74782654 -207411010 - AluSx SINE Alu -13 299 1 243 0 0 0 chr1 74783438 74783465 -207410199 + (T)n Simple_repeat Simple_repeat 1 27 0 39803 52 8 3 chr1 74783498 74789621 -207404043 - L1PA2 LINE L1 -1 6154 2 1597 109 22 0 chr1 74789619 74789886 -207403778 - L1MA3 LINE L1 -235 6070 5798 * 353 316 57 0 chr1 74789884 74789964 -207403700 + L1MC4a LINE L1 6372 6446 -1362 * 237 65 0 0 chr1 74789964 74789995 -207403669 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 353 316 57 0 chr1 74789995 74790072 -207403592 + L1MC4a LINE L1 6446 6538 -1270 563 258 98 18 chr1 74790098 74790323 -207403341 - L1MCc LINE L1 -5344 1079 837 249 375 0 0 chr1 74790406 74790486 -207403178 + L2 LINE L2 3186 3265 -7 2084 147 0 0 chr1 74792637 74792944 -207400720 + AluSx SINE Alu 1 307 -5 211 319 32 11 chr1 74793508 74793602 -207400062 - L2 LINE L2 -39 3233 3138 341 221 87 67 chr1 74794869 74795018 -207398646 + LTR50 LTR ERVL 67 218 -577 276 304 111 14 chr1 74795126 74795333 -207398331 + LTR50 LTR ERVL 405 631 -164 739 288 104 93 chr1 74795549 74796422 -207397242 + L2 LINE L2 1936 2818 -496 258 270 98 75 chr1 74796904 74797078 -207396586 + ERVL LTR ERVL 4057 4234 -1530 7545 44 7 0 chr1 74797245 74798231 -207395433 + L1P LINE L1 3695 4687 -1459 341 345 64 12 chr1 74798251 74798422 -207395242 - MIR SINE MIR -70 192 13 255 231 33 11 chr1 74798763 74798854 -207394810 - L1ME LINE L1 -298 5823 5731 554 101 0 0 chr1 74799156 74799245 -207394419 + L1MA3 LINE L1 6217 6305 0 1862 243 92 52 chr1 74799253 74800644 -207393020 - L1ME1 LINE L1 -17 6132 4895 225 167 0 0 chr1 74800646 74800682 -207392982 - Alu SINE Alu -266 36 1 751 248 67 12 chr1 74800682 74800936 -207392728 - L1ME1 LINE L1 -2293 3836 3569 2013 205 20 0 chr1 74800936 74801394 -207392270 + L1 LINE L1 4137 4603 -1543 3046 136 2 6 chr1 74801394 74801865 -207391799 + L1PB3 LINE L1 5671 6147 -7 1640 191 102 6 chr1 74802278 74802639 -207391025 + MSTD LTR MaLR 1 396 0 553 283 56 25 chr1 74802856 74803054 -207390610 - HAL1 LINE L1 -935 1572 1369 355 263 107 83 chr1 74803064 74803691 -207389973 - L1ME1 LINE L1 -4880 1239 598 1265 289 99 35 chr1 74803794 74804686 -207388978 - L1MEd LINE L1 -5168 951 3 648 141 0 94 chr1 74805061 74805210 -207388454 - FLAM_A SINE Alu 0 142 8 374 350 75 21 chr1 74805223 74805430 -207388234 - L1MC4 LINE L1 -1 8041 7808 2692 199 79 25 chr1 74805430 74806125 -207387539 - MER44D DNA MER2_type 0 605 1 374 350 75 21 chr1 74806125 74806251 -207387413 - L1MC4 LINE L1 -234 7808 7690 562 241 141 5 chr1 74807522 74807721 -207385943 - L1ME LINE L1 -354 5812 5587 * 2412 276 22 19 chr1 74807714 74807957 -207385707 - L1ME LINE L1 -2304 3842 3601 7790 17 0 1 chr1 74807957 74809407 -207384257 - L1PA3 LINE L1 0 6155 4705 2412 276 22 19 chr1 74809407 74810297 -207383367 - L1ME LINE L1 -2545 3601 2706 17705 99 43 2 chr1 74810409 74813733 -207379931 + L1PA7 LINE L1 2761 6141 -13 315 154 0 0 chr1 74813739 74813804 -207379860 + A-rich Low_complexity Low_complexity 1 65 0 1651 169 44 7 chr1 74813995 74814291 -207379373 + AluJb SINE Alu 1 307 -5 193 361 39 23 chr1 74814708 74814838 -207378826 + MIR3 SINE MIR 67 198 -10 347 322 48 16 chr1 74815547 74815722 -207377942 - L1M4 LINE L1 -603 5575 5401 853 226 74 12 chr1 74815722 74816019 -207377645 - L1MC3 LINE L1 -542 5817 5329 * 23436 156 46 70 chr1 74816014 74816501 -207377163 - L1MA9 LINE L1 -6 6306 5809 2302 122 34 0 chr1 74816501 74816853 -207376811 - THE1B LTR MaLR 0 364 1 23436 156 46 70 chr1 74816853 74817719 -207375945 - L1MA9 LINE L1 -503 5809 4924 1253 40 17 11 chr1 74817719 74817896 -207375768 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 23436 156 46 70 chr1 74817896 74819848 -207373816 - L1MA9 LINE L1 -1388 4924 2927 1810 183 0 3 chr1 74819848 74819867 -207373797 - AluJb SINE Alu -1 311 293 777 69 35 7 chr1 74819867 74820011 -207373653 + (TA)n Simple_repeat Simple_repeat 1 148 0 1810 183 0 3 chr1 74820011 74820303 -207373361 - AluJb SINE Alu -19 293 1 23436 156 46 70 chr1 74820303 74820968 -207372696 - L1MA9 LINE L1 -3385 2927 2248 195 42 0 0 chr1 74820968 74820992 -207372672 + (TG)n Simple_repeat Simple_repeat 1 24 0 23436 156 46 70 chr1 74820992 74823480 -207370184 - L1MA9 LINE L1 -4064 2248 4 451 277 110 0 chr1 74823553 74823708 -207369956 - MIR3 SINE MIR -7 201 30 363 98 0 0 chr1 74824749 74824810 -207368854 + (CA)n Simple_repeat Simple_repeat 1 61 0 304 230 106 103 chr1 74824841 74825102 -207368562 - L1ME4a LINE L1 -212 5909 5643 2364 83 3 0 chr1 74825102 74825403 -207368261 - AluSc SINE Alu -7 302 1 2749 280 32 26 chr1 74825547 74827081 -207366583 - L1M1 LINE L1 -4067 3498 2017 280 351 54 5 chr1 74827345 74827530 -207366134 - L1M2a LINE L1 -5309 1859 1666 1868 286 88 23 chr1 74827643 74827977 -207365687 - L1ME4a LINE L1 -816 5330 5019 1208 265 75 66 chr1 74827977 74828565 -207365099 - MLT1E LTR MaLR 0 593 1 1868 286 88 23 chr1 74828565 74829453 -207364211 - L1ME4a LINE L1 -1127 5019 4028 1376 247 50 7 chr1 74829525 74829987 -207363677 + L1M4 LINE L1 2235 2716 -3430 2385 22 0 11 chr1 74829987 74830265 -207363399 + AluYa5 SINE Alu 1 275 -36 2661 157 6 26 chr1 74831535 74832039 -207361625 - L1MC1 LINE L1 0 6333 5840 360 127 0 0 chr1 74832053 74832116 -207361548 - L1PB4 LINE L1 -2 6154 6092 4445 111 14 1 chr1 74832153 74832291 -207361373 - L1PB4 LINE L1 -226 5930 5795 324 102 0 0 chr1 74832291 74832340 -207361324 + (TG)n Simple_repeat Simple_repeat 1 49 0 4445 111 14 1 chr1 74832340 74832891 -207360773 - L1PB4 LINE L1 -361 5795 5233 674 166 34 2 chr1 74832908 74833044 -207360620 - L1MC1 LINE L1 -417 5825 5716 21 57 0 0 chr1 74833183 74833218 -207360446 + AT_rich Low_complexity Low_complexity 1 35 0 2499 84 0 0 chr1 74833222 74833532 -207360132 + AluSq SINE Alu 1 310 -3 1118 97 0 0 chr1 74835003 74835157 -207358507 + L1PA11 LINE L1 6021 6174 0 509 155 0 0 chr1 74835363 74835447 -207358217 + U13 snRNA snRNA 19 102 -2 1679 139 21 79 chr1 74835467 74835797 -207357867 + AluJb SINE Alu 1 311 -1 239 363 22 0 chr1 74835876 74835967 -207357697 - MIR3 SINE MIR -41 167 75 243 0 0 0 chr1 74836087 74836114 -207357550 + (T)n Simple_repeat Simple_repeat 1 27 0 2426 141 97 105 chr1 74836477 74837096 -207356568 - LTR18B LTR ERVL 0 614 1 1091 149 77 5 chr1 74837512 74837733 -207355931 + L1MB3 LINE L1 5944 6180 -3 188 318 15 15 chr1 74837950 74838016 -207355648 - L2 LINE L2 -221 3051 2986 540 286 34 45 chr1 74838029 74838088 -207355576 + MER5A DNA MER1_type 14 72 -117 980 25 0 0 chr1 74838088 74838207 -207355457 + L1PA4 LINE L1 6037 6155 0 540 286 34 45 chr1 74838207 74838325 -207355339 + MER5A DNA MER1_type 72 189 0 223 237 220 0 chr1 74838328 74838387 -207355277 + MIR SINE MIR 12 83 -179 745 259 162 4 chr1 74838870 74839129 -207354535 - LTR50 LTR ERVL -493 302 3 3375 70 5 0 chr1 74841607 74842050 -207351614 - L1PA7 LINE L1 -2 6152 5708 21 36 0 0 chr1 74842490 74842518 -207351146 + AT_rich Low_complexity Low_complexity 1 28 0 271 311 93 25 chr1 74842527 74842688 -207350976 - ERVL LTR ERVL -266 5498 5327 196 272 99 43 chr1 74843097 74843259 -207350405 - L2 LINE L2 -1615 1699 1529 398 239 31 23 chr1 74844406 74844536 -207349128 - L2 LINE L2 -20 3293 3163 211 316 100 16 chr1 74844619 74844809 -207348855 - L2 LINE L2 -339 2975 2770 619 313 83 35 chr1 74844816 74845104 -207348560 + L2 LINE L2 629 930 -2384 897 263 40 21 chr1 74845466 74845934 -207347730 - MLT1F1-int LTR MaLR -770 601 1 1181 203 45 100 chr1 74845934 74846333 -207347331 - MLT1F1 LTR MaLR 0 567 191 871 279 107 24 chr1 74846333 74846706 -207346958 + L2 LINE L2 1373 1776 -1538 2051 282 61 31 chr1 74846769 74847763 -207345901 + L1MEc LINE L1 46 1069 -5327 333 242 97 8 chr1 74847841 74847965 -207345699 - L1MC4 LINE L1 -924 7118 6984 * 1977 189 39 120 chr1 74847937 74848673 -207344991 - L1MC4a LINE L1 -969 6839 6163 295 296 143 0 chr1 74848807 74848905 -207344759 + MER5A DNA MER1_type 54 165 -24 279 241 152 62 chr1 74848809 74848921 -207344743 - MER5A DNA MER1_type -45 144 23 * 231 318 59 0 chr1 74850002 74850087 -207343577 + MIR SINE MIR 109 198 -64 1197 185 160 7 chr1 74850238 74850519 -207343145 - MER58B DNA MER1_type -15 326 3 239 323 8 15 chr1 74851328 74851435 -207342229 - MIR SINE MIR -67 141 44 21 0 0 0 chr1 74852090 74852111 -207341553 + AT_rich Low_complexity Low_complexity 1 21 0 3968 221 30 34 chr1 74852198 74853990 -207339674 - L1ME1 LINE L1 -4 6231 4446 3226 234 78 41 chr1 74854001 74854156 -207339508 - L1ME1 LINE L1 -2748 3467 3319 2049 100 75 65 chr1 74854156 74854527 -207339137 + THE1C LTR MaLR 1 375 0 3226 234 78 41 chr1 74854527 74856343 -207337321 - L1ME1 LINE L1 -2896 3319 1452 304 313 44 31 chr1 74856985 74857145 -207336519 - L2 LINE L2 0 3313 3152 25 51 0 0 chr1 74857285 74857324 -207336340 + AT_rich Low_complexity Low_complexity 1 39 0 576 331 112 13 chr1 74857849 74858154 -207335510 - L2 LINE L2 -149 3164 2830 1159 271 236 6 chr1 74858176 74858722 -207334942 - L2 LINE L2 -727 2587 1916 421 259 113 66 chr1 74858756 74859181 -207334483 - MER65A LTR ERV1 0 445 1 182 125 0 25 chr1 74860528 74860568 -207333096 + (TA)n Simple_repeat Simple_repeat 2 40 0 2349 170 40 2 chr1 74860696 74861120 -207332544 + MER31A LTR ERV1 5 444 -41 257 279 0 15 chr1 74861144 74861212 -207332452 - L2 LINE L2 -5 3308 3242 217 237 59 92 chr1 74861363 74861515 -207332149 - L2 LINE L2 -410 2904 2758 219 241 0 19 chr1 74861645 74861706 -207331958 + MIR SINE MIR 108 165 -43 255 159 0 23 chr1 74861847 74861891 -207331773 - AluJ/FLAM SINE Alu -211 91 49 899 150 0 0 chr1 74861896 74862029 -207331635 - FLAM_C SINE Alu 0 133 1 620 270 118 0 chr1 74862161 74862424 -207331240 - L1M4 LINE L1 -3161 2985 2692 29 70 0 0 chr1 74862932 74862989 -207330675 + AT_rich Low_complexity Low_complexity 1 57 0 469 233 132 39 chr1 74863359 74863488 -207330176 + MIR SINE MIR 7 147 -115 26 30 0 0 chr1 74863907 74863940 -207329724 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 74865606 74865627 -207328037 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 74866373 74866405 -207327259 + AT_rich Low_complexity Low_complexity 1 32 0 436 276 64 32 chr1 74866852 74867008 -207326656 + MIR SINE MIR 90 250 -12 198 0 0 0 chr1 74867147 74867169 -207326495 + (CA)n Simple_repeat Simple_repeat 1 22 0 1389 119 40 26 chr1 74867378 74867605 -207326059 - MER30 DNA MER1_type 0 230 1 23 0 0 0 chr1 74867644 74867667 -207325997 + AT_rich Low_complexity Low_complexity 1 23 0 839 130 0 41 chr1 74868213 74868359 -207325305 + MER1B DNA MER1_type 200 339 0 210 403 21 7 chr1 74869874 74870018 -207323646 + MIR SINE MIR 50 195 -67 1834 38 0 5 chr1 74871641 74871854 -207321810 - AluY SINE Alu -15 296 85 1252 152 5 0 chr1 74872488 74872692 -207320972 + MER3 DNA MER1_type 1 205 -4 2124 174 14 23 chr1 74872974 74873410 -207320254 - L1MC3 LINE L1 0 7785 7354 * 3261 154 40 34 chr1 74873408 74874065 -207319599 - L1MC3 LINE L1 -269 7516 6856 2354 185 51 20 chr1 74874081 74874246 -207319418 + L1MC3 LINE L1 5131 5289 -888 2835 16 0 0 chr1 74874246 74874557 -207319107 + AluYb8 SINE Alu 1 311 -7 2354 185 51 20 chr1 74874557 74874992 -207318672 + L1MC3 LINE L1 5289 5763 -414 * 3661 169 82 13 chr1 74874986 74875745 -207317919 + L1MC3 LINE L1 6040 6850 -935 22 0 0 0 chr1 74876168 74876190 -207317474 + AT_rich Low_complexity Low_complexity 1 22 0 232 207 11 11 chr1 74877310 74877397 -207316267 + (TA)n Simple_repeat Simple_repeat 2 88 0 239 276 68 101 chr1 74878051 74878427 -207315237 - L2 LINE L2 -189 3083 2689 33 0 0 0 chr1 74878688 74878721 -207314943 + AT_rich Low_complexity Low_complexity 1 33 0 1809 187 0 16 chr1 74879090 74879405 -207314259 - AluJb SINE Alu -2 310 1 287 43 64 0 chr1 74879455 74879502 -207314162 + (CATAT)n Simple_repeat Simple_repeat 3 52 0 296 253 11 11 chr1 74879620 74879707 -207313957 - L1ME LINE L1 -516 5605 5519 579 249 184 42 chr1 74881169 74881430 -207312234 - L2 LINE L2 -6 3307 3010 1119 184 5 15 chr1 74881436 74881642 -207312022 + MER6B DNA MER2_type 1 204 -6 428 273 58 0 chr1 74881659 74881780 -207311884 - L2 LINE L2 -342 2971 2844 21 0 0 0 chr1 74881990 74882011 -207311653 + AT_rich Low_complexity Low_complexity 1 21 0 2790 108 54 7 chr1 74882421 74882885 -207310779 - LTR19A LTR ERV1 0 486 1 222 240 80 0 chr1 74883427 74883477 -207310187 + MIR SINE MIR 206 259 -3 27 29 0 0 chr1 74884141 74884175 -207309489 + AT_rich Low_complexity Low_complexity 1 34 0 359 231 261 8 chr1 74884922 74885052 -207308612 + MIR SINE MIR 100 262 0 323 295 71 0 chr1 74885059 74885171 -207308493 - MIR SINE MIR -47 215 96 265 77 0 0 chr1 74885297 74885336 -207308328 + HSMAR1 DNA Mariner 1 39 -1248 582 221 91 39 chr1 74885343 74885551 -207308113 + MER112 DNA MER1_type 41 259 -1 193 270 40 54 chr1 74885916 74885990 -207307674 - L2 LINE L2 0 3272 3200 247 367 117 0 chr1 74886111 74886231 -207307433 - L2 LINE L2 0 3272 3139 368 164 0 0 chr1 74886271 74886338 -207307326 - L1MA4A LINE L1 -25 6278 6212 1775 140 32 7 chr1 74887425 74887710 -207305954 - AluJb SINE Alu -20 292 1 315 288 9 18 chr1 74887841 74887952 -207305712 - MIR SINE MIR -62 146 37 387 143 20 61 chr1 74887983 74888081 -207305583 + L1MB3 LINE L1 6087 6180 -3 1854 206 78 5 chr1 74888081 74888503 -207305161 + L1M4 LINE L1 5323 5775 -403 446 265 39 34 chr1 74889349 74889553 -207304111 - L1ME3A LINE L1 -291 5879 5675 22 35 0 0 chr1 74889577 74889606 -207304058 + AT_rich Low_complexity Low_complexity 1 29 0 229 239 128 90 chr1 74889662 74889850 -207303814 - HAL1 LINE L1 -64 2443 2249 246 231 77 51 chr1 74890019 74890136 -207303528 - HAL1b LINE L1 -475 873 754 22 35 0 0 chr1 74890278 74890307 -207303357 + AT_rich Low_complexity Low_complexity 1 29 0 194 191 0 32 chr1 74890392 74890455 -207303209 + CT-rich Low_complexity Low_complexity 4 64 0 485 267 161 10 chr1 74890652 74890944 -207302720 - HAL1 LINE L1 -695 1812 1477 2106 33 4 0 chr1 74890964 74891205 -207302459 + SVA Other Other 1145 1386 0 842 273 101 49 chr1 74891240 74891471 -207302193 - HAL1 LINE L1 -1104 1403 1185 189 0 0 0 chr1 74891471 74891492 -207302172 + (TG)n Simple_repeat Simple_repeat 2 22 0 842 273 101 49 chr1 74891492 74891893 -207301771 - HAL1 LINE L1 -1322 1185 738 341 307 80 55 chr1 74893300 74893463 -207300201 + MIR3 SINE MIR 19 185 -23 205 311 0 22 chr1 74893494 74893584 -207300080 + T-rich Low_complexity Low_complexity 1 88 0 252 290 265 6 chr1 74896622 74896784 -207296880 - MIR SINE MIR -48 214 11 407 337 112 24 chr1 74898586 74898791 -207294873 - MIR SINE MIR -36 226 4 965 141 0 7 chr1 74898846 74898988 -207294676 + AluJo SINE Alu 6 146 -166 1884 117 34 7 chr1 74901539 74901698 -207291966 - AluSx SINE Alu -13 299 127 207 0 0 0 chr1 74901698 74901721 -207291943 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1884 117 34 7 chr1 74901721 74901852 -207291812 - AluSx SINE Alu -185 127 1 400 282 39 13 chr1 74903075 74903264 -207290400 - L1MC4a LINE L1 -297 5824 5671 249 206 60 96 chr1 74903295 74903494 -207290170 - L1MC4a LINE L1 -2335 5473 5282 255 268 0 0 chr1 74903522 74903578 -207290086 - L1ME3 LINE L1 -21 6141 6086 * 879 252 55 33 chr1 74903571 74903881 -207289783 - L1ME3 LINE L1 -497 5665 5351 2677 90 58 21 chr1 74903981 74904413 -207289251 - LTR7 LTR ERV1 -2 448 1 2514 79 45 13 chr1 74904413 74904793 -207288871 - HERVH LTR ERV1 0 7713 7322 * 17043 91 13 43 chr1 74904791 74907634 -207286030 - HERVH LTR ERV1 -1894 5819 431 4230 96 19 18 chr1 74907629 74908375 -207285289 - HERVH LTR ERV1 -7064 649 1 * 2645 93 58 21 chr1 74908377 74908809 -207284855 - LTR7 LTR ERV1 -2 448 1 960 290 60 25 chr1 74908809 74909377 -207284287 - L1M4 LINE L1 -4608 2217 1486 4212 110 0 17 chr1 74909427 74909556 -207284108 - L1PA12 LINE L1 0 6168 6038 1994 157 30 14 chr1 74909556 74909925 -207283739 + THE1C LTR MaLR 1 375 0 4212 110 0 17 chr1 74909925 74910440 -207283224 - L1PA12 LINE L1 -130 6038 5535 322 345 29 19 chr1 74910450 74910656 -207283008 - L1ME3 LINE L1 -1240 4906 4699 1532 191 115 9 chr1 74910941 74911271 -207282393 - MLT1A1 LTR MaLR 0 365 1 842 150 54 6 chr1 74911380 74911618 -207282046 - MER34 LTR ERV1 0 542 238 * 1221 119 69 15 chr1 74911617 74911819 -207281845 + MSTA LTR MaLR 216 428 0 383 351 86 33 chr1 74911869 74912228 -207281436 + L1MEd LINE L1 406 783 -5336 12886 109 13 28 chr1 74912457 74915401 -207278263 + L1P3 LINE L1 4 2961 -3500 9234 118 2 1 chr1 75116452 75118648 -207075016 - L1PA8 LINE L1 -7 6165 3970 6126 192 19 7 chr1 75118759 75120043 -207073621 - L1 LINE L1 -1184 4962 3663 237 108 0 0 chr1 75121435 75121472 -207072192 + (CA)n Simple_repeat Simple_repeat 2 38 0 445 296 106 25 chr1 75121516 75121715 -207071949 + MIR SINE MIR 12 226 -36 383 285 114 25 chr1 75122744 75122902 -207070762 - MIR3 SINE MIR -4 204 33 5260 92 21 46 chr1 75123933 75124784 -207068880 + L1PB2 LINE L1 5322 6151 0 1366 256 111 16 chr1 75124783 75125611 -207068053 + L1ME LINE L1 4693 5589 -577 * 1087 113 0 0 chr1 75125714 75125865 -207067799 + AluSg/x SINE Alu 154 304 -8 387 0 0 0 chr1 75126226 75126269 -207067395 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2529 127 3 0 chr1 75126417 75126778 -207066886 - THE1B LTR MaLR -2 362 1 488 318 66 14 chr1 75127328 75127539 -207066125 - MIR SINE MIR -13 249 28 5179 114 32 9 chr1 75127680 75128730 -207064934 - L1PA16 LINE L1 -9 6157 5053 3713 154 2 10 chr1 75128737 75129933 -207063731 + L1PB1 LINE L1 4613 5800 -351 29 0 0 0 chr1 75129933 75129962 -207063702 + AT_rich Low_complexity Low_complexity 1 29 0 2530 92 5 5 chr1 75129970 75130340 -207063324 + L1PB1 LINE L1 5782 6151 0 7370 209 95 8 chr1 75130355 75132350 -207061314 - L1 LINE L1 -1089 5057 2890 634 346 64 29 chr1 75132554 75133104 -207060560 - HERVL LTR ERVL -1075 4410 3862 493 382 52 6 chr1 75133150 75133480 -207060184 - HERVL LTR ERVL -1905 3749 3405 532 225 120 0 chr1 75133491 75133633 -207060031 + MER63 DNA MER1_type 3 787 -275 339 311 6 61 chr1 75133679 75133843 -207059821 - HERVL LTR ERVL -2273 3381 3227 1658 314 49 5 chr1 75133921 75134472 -207059192 - HERVL LTR ERVL -1905 3091 2517 253 268 0 61 chr1 75134560 75134631 -207059033 - HERVL LTR ERVL -3305 2349 2282 2016 195 49 13 chr1 75134631 75135082 -207058582 + MLT1C LTR MaLR 1 467 0 315 192 27 14 chr1 75135118 75135191 -207058473 - L1MCa LINE L1 -4359 2067 1994 623 410 41 36 chr1 75135225 75135443 -207058221 - HERVL LTR ERVL -2763 2233 2018 2882 87 54 7 chr1 75135443 75135867 -207057797 - MLT2A1 LTR ERVL 0 444 1 623 410 41 36 chr1 75135867 75136449 -207057215 - HERVL LTR ERVL -2978 2018 1366 1759 336 69 30 chr1 75136495 75137714 -207055950 - HERVL LTR ERVL -3728 1268 3 1020 251 95 37 chr1 75137717 75138148 -207055516 - LTR16A1 LTR ERVL -1 456 1 778 263 16 0 chr1 75139301 75139487 -207054177 + MER5A DNA MER1_type 1 189 0 2058 138 3 6 chr1 75139679 75139990 -207053674 + AluSq SINE Alu 1 310 -3 446 320 0 0 chr1 75140066 75140191 -207053473 + MIR SINE MIR 126 250 -12 447 216 59 10 chr1 75140464 75140566 -207053098 - Zaphod DNA AcHobo 0 4031 3925 1486 200 176 2 chr1 75140576 75140991 -207052673 + MLT1D LTR MaLR 4 503 -2 2284 225 73 57 chr1 75140998 75141187 -207052477 - Zaphod DNA AcHobo -144 3887 3703 2079 134 7 0 chr1 75141187 75141477 -207052187 - AluSx SINE Alu -20 292 1 2284 225 73 57 chr1 75141477 75142288 -207051376 - Zaphod DNA AcHobo -328 3703 2871 1004 279 64 18 chr1 75142284 75142614 -207051050 - Zaphod DNA AcHobo -3495 536 192 * 186 355 129 0 chr1 75142818 75142911 -207050753 - MIR3 SINE MIR -100 108 4 269 324 59 0 chr1 75143073 75143175 -207050489 + L2 LINE L2 3138 3245 -27 361 267 57 9 chr1 75143320 75143425 -207050239 - L3b LINE CR1 -118 1465 1356 698 284 110 3 chr1 75144061 75144389 -207049275 - L1ME LINE L1 -527 5635 5273 416 255 56 15 chr1 75144406 75144602 -207049062 - L1ME LINE L1 -918 5228 5025 229 302 39 16 chr1 75144605 75144734 -207048930 - L1ME LINE L1 -1230 4916 4785 958 313 106 18 chr1 75144770 75146013 -207047651 - L1ME LINE L1 -1430 4716 3364 306 164 0 0 chr1 75146020 75146075 -207047589 + (CA)n Simple_repeat Simple_repeat 2 56 0 334 262 77 65 chr1 75146824 75146992 -207046672 - MIR SINE MIR 0 262 93 697 168 8 16 chr1 75147175 75147300 -207046364 - FLAM_C SINE Alu -19 124 1 26 50 0 0 chr1 75147745 75147785 -207045879 + AT_rich Low_complexity Low_complexity 1 40 0 224 186 23 0 chr1 75147995 75148038 -207045626 + (TA)n Simple_repeat Simple_repeat 2 45 0 6900 68 6 0 chr1 75148370 75148912 -207044752 + L1PA8 LINE L1 4382 4920 -1252 2246 96 0 0 chr1 75148912 75149192 -207044472 + AluY SINE Alu 1 280 -31 369 0 0 0 chr1 75149195 75149236 -207044428 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 6900 68 6 0 chr1 75149236 75150485 -207043179 + L1PA8 LINE L1 4921 6167 -5 365 250 162 0 chr1 75150522 75150658 -207043006 - MIR SINE MIR 0 262 105 315 313 62 25 chr1 75150659 75150837 -207042827 - LTR33A LTR ERVL -331 190 16 1099 312 68 11 chr1 75151909 75151992 -207041672 + LTR33 LTR ERVL 1 78 -443 2055 166 8 16 chr1 75151992 75152360 -207041304 + MLT1A1 LTR MaLR 1 365 0 1099 312 68 11 chr1 75152360 75152747 -207040917 + LTR33 LTR ERVL 78 498 -23 642 292 120 28 chr1 75152840 75153124 -207040540 + LTR16A LTR ERVL 139 448 -2 356 387 71 22 chr1 75153311 75153536 -207040128 + L1ME LINE L1 5414 5649 -2159 293 207 69 0 chr1 75154061 75154148 -207039516 + L1ME LINE L1 5731 5823 -298 225 0 0 0 chr1 75154251 75154276 -207039388 + (TG)n Simple_repeat Simple_repeat 2 26 0 400 328 64 12 chr1 75154499 75154670 -207038994 + MIR SINE MIR 13 192 -70 10671 36 0 0 chr1 75154690 75155973 -207037691 - L1PA5 LINE L1 -1459 4687 3405 7226 46 0 0 chr1 75155973 75157466 -207036198 + L1PA5 LINE L1 4686 6178 0 951 186 41 23 chr1 75157498 75157719 -207035945 + MER33 DNA MER1_type 1 225 -99 380 281 81 97 chr1 75157866 75158051 -207035613 + MIR3 SINE MIR 6 187 -21 394 293 15 30 chr1 75158099 75158232 -207035432 - L2 LINE L2 0 3272 3142 961 255 88 29 chr1 75158840 75159224 -207034440 - MLT1I LTR MaLR 0 409 3 211 216 0 0 chr1 75159829 75159880 -207033784 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 323 381 60 57 chr1 75160231 75160567 -207033097 - L2 LINE L2 0 3272 2936 33 66 0 0 chr1 75163016 75163077 -207030587 + AT_rich Low_complexity Low_complexity 1 61 0 1987 162 7 0 chr1 75163551 75163853 -207029811 - AluSx SINE Alu -8 304 1 236 298 43 0 chr1 75164207 75164301 -207029363 - MER117 DNA MER1_type -26 171 74 1771 156 178 8 chr1 75164309 75164675 -207028989 + MSTA LTR MaLR 1 428 0 9826 136 6 34 chr1 75164680 75166301 -207027363 + MSTA-int LTR MaLR 6 1580 0 1844 145 175 14 chr1 75166301 75166666 -207026998 + MSTA LTR MaLR 1 424 -4 599 236 58 68 chr1 75166916 75167107 -207026557 - MER5A DNA MER1_type 0 189 1 29 0 0 0 chr1 75167738 75167767 -207025897 + AT_rich Low_complexity Low_complexity 1 29 0 2285 104 0 0 chr1 75167767 75168066 -207025598 - AluSq SINE Alu -12 301 3 22 56 0 0 chr1 75169977 75170013 -207023651 + AT_rich Low_complexity Low_complexity 1 36 0 496 282 95 17 chr1 75170188 75170429 -207023235 + MIR SINE MIR 2 261 -1 770 181 0 14 chr1 75170477 75170615 -207023049 + MLT1C LTR MaLR 302 437 -30 3434 206 11 4 chr1 75170615 75171364 -207022300 + MLT1C-int LTR MaLR 10 882 -489 352 296 0 0 chr1 75171443 75171531 -207022133 + MLT-int LTR MaLR 686 773 -962 1942 194 80 18 chr1 75171630 75172031 -207021633 + MLT1B-int LTR MaLR 946 1371 0 1574 167 19 84 chr1 75172033 75172392 -207021272 + MLT1B LTR MaLR 3 338 -52 233 281 31 16 chr1 75172921 75172985 -207020679 + L2 LINE L2 3229 3293 -20 11006 80 24 3 chr1 75173015 75175275 -207018389 + L1PA7 LINE L1 3865 6154 0 6508 112 53 3 chr1 75175399 75176458 -207017206 - L1P3 LINE L1 -2919 3542 2431 * 11115 127 14 20 chr1 75176457 75178267 -207015397 - L1P3 LINE L1 -4667 1784 6 941 250 148 31 chr1 75179059 75179615 -207014049 + L1MC5 LINE L1 7306 7926 -35 329 188 52 73 chr1 75180967 75181063 -207012601 - L2 LINE L2 0 3313 3220 2204 118 0 37 chr1 75181077 75181425 -207012239 + MER1B DNA MER1_type 3 337 0 322 281 118 13 chr1 75181655 75181808 -207011856 + MIR SINE MIR 82 250 -12 524 274 113 4 chr1 75183487 75183673 -207009991 + MIR SINE MIR 25 233 -29 274 291 14 78 chr1 75184906 75185047 -207008617 - MIR SINE MIR -56 206 75 334 207 182 41 chr1 75185077 75185198 -207008466 - L2 LINE L2 0 3313 3176 5425 25 2 0 chr1 75185963 75186602 -207007062 - L1P1 LINE L1 -1443 4703 4064 * 5738 19 4 3 chr1 75186598 75187716 -207005948 + L1P1 LINE L1 4698 5816 -339 606 340 33 17 chr1 75187816 75188057 -207005607 - L2 LINE L2 -185 3128 2884 23 0 0 0 chr1 75188120 75188143 -207005521 + AT_rich Low_complexity Low_complexity 1 23 0 180 273 256 8 chr1 75188189 75188310 -207005354 - MIR SINE MIR -40 222 72 2311 145 3 0 chr1 75188630 75188995 -207004669 - MER47A DNA MER2_type 0 366 1 364 181 14 0 chr1 75189489 75189561 -207004103 + MER94 DNA DNA 1 73 -61 570 216 87 87 chr1 75189604 75189812 -207003852 + MER63A DNA MER1_type 3 210 0 218 330 57 19 chr1 75189995 75190101 -207003563 + L2 LINE L2 3160 3269 -3 272 301 79 10 chr1 75191284 75191487 -207002177 + L1ME4a LINE L1 5688 5904 -217 26 0 0 0 chr1 75192469 75192495 -207001169 + AT_rich Low_complexity Low_complexity 1 26 0 315 344 41 78 chr1 75192718 75193012 -207000652 - L2 LINE L2 -47 3225 2943 827 272 107 51 chr1 75193152 75193691 -206999973 - L2 LINE L2 0 3313 2731 184 257 162 73 chr1 75194036 75194129 -206999535 + MIR SINE MIR 6 116 -146 2045 141 0 6 chr1 75194129 75194442 -206999222 - AluSp SINE Alu 0 313 3 184 257 162 73 chr1 75194442 75194484 -206999180 + MIR SINE MIR 116 153 -109 331 306 45 0 chr1 75194498 75194609 -206999055 - L2 LINE L2 -3 3310 3195 242 363 26 0 chr1 75194616 75194729 -206998935 + MIR SINE MIR 142 257 -5 1774 126 41 4 chr1 75195749 75196042 -206997622 + AluSx SINE Alu 1 303 0 558 327 24 6 chr1 75197228 75197393 -206996271 + MIR3 SINE MIR 32 199 -9 1979 132 7 10 chr1 75197615 75197911 -206995753 - AluSx SINE Alu -17 295 1 423 334 35 83 chr1 75198891 75199205 -206994459 + L2 LINE L2 2974 3272 0 201 308 154 0 chr1 75199405 75199483 -206994181 + MIR SINE MIR 61 150 -58 863 173 98 42 chr1 75199831 75199871 -206993793 + AluJb SINE Alu 87 123 -189 291 54 0 0 chr1 75199871 75199908 -206993756 + (CA)n Simple_repeat Simple_repeat 1 37 0 863 173 98 42 chr1 75199908 75200081 -206993583 + AluJb SINE Alu 123 312 0 668 260 96 14 chr1 75201153 75201361 -206992303 + MIR SINE MIR 10 234 -28 257 295 80 81 chr1 75201704 75202118 -206991546 - L2 LINE L2 -213 3059 2644 244 298 50 41 chr1 75202325 75202446 -206991218 + L2 LINE L2 3182 3303 -10 265 252 15 107 chr1 75206388 75206519 -206987145 + MER74B LTR ERVL 430 548 -74 458 374 108 18 chr1 75207045 75207377 -206986287 - L3b LINE CR1 -9 1574 1213 418 324 40 103 chr1 75208605 75208954 -206984710 - L2 LINE L2 -3 3269 2943 546 294 57 24 chr1 75208983 75209194 -206984470 - MIR SINE MIR 0 262 45 755 290 129 48 chr1 75210237 75210733 -206982931 + L2 LINE L2 2763 3312 -1 241 248 68 77 chr1 75212159 75212276 -206981388 - L1MC4 LINE L1 -32 8010 7895 22 0 0 0 chr1 75212327 75212349 -206981315 + AT_rich Low_complexity Low_complexity 1 22 0 1849 223 15 63 chr1 75212381 75212650 -206981014 - L1ME1 LINE L1 -313 5853 5621 1947 157 0 0 chr1 75212650 75212949 -206980715 - AluSx SINE Alu -13 299 1 1849 223 15 63 chr1 75212949 75213217 -206980447 - L1ME1 LINE L1 -545 5621 5342 36 23 0 0 chr1 75213474 75213517 -206980147 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 75213792 75213813 -206979851 + AT_rich Low_complexity Low_complexity 1 21 0 221 266 16 16 chr1 75213841 75213905 -206979759 + MIR SINE MIR 189 252 -10 230 341 47 0 chr1 75215043 75215128 -206978536 + MIR SINE MIR 160 248 -14 286 277 59 84 chr1 75215670 75215749 -206977915 + MIR SINE MIR 7 86 -122 258 32 0 0 chr1 75215749 75215780 -206977884 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 286 277 59 84 chr1 75215780 75215899 -206977765 + MIR SINE MIR 86 205 -3 702 191 0 50 chr1 75217388 75217494 -206976170 + AluJ SINE Alu 1 100 -212 2604 115 5 3 chr1 75217494 75217868 -206975796 + THE1C LTR MaLR 1 375 0 702 191 0 50 chr1 75217868 75217902 -206975762 + AluJ SINE Alu 100 134 -178 795 227 7 0 chr1 75217911 75218065 -206975599 + AluJ SINE Alu 137 291 -11 1923 140 4 0 chr1 75218087 75218359 -206975305 + AluSx SINE Alu 1 273 -39 238 321 32 10 chr1 75218730 75218833 -206974831 - MIR3 SINE MIR -45 163 57 231 36 0 0 chr1 75219235 75219263 -206974401 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2863 273 130 47 chr1 75219274 75220830 -206972834 + L2 LINE L2 1460 3170 -143 524 15 15 0 chr1 75220830 75220895 -206972769 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2863 273 130 47 chr1 75220895 75221053 -206972611 + L2 LINE L2 3170 3313 0 21 71 0 0 chr1 75221147 75221189 -206972475 + AT_rich Low_complexity Low_complexity 1 42 0 46 0 0 0 chr1 75221218 75221264 -206972400 + AT_rich Low_complexity Low_complexity 1 46 0 183 377 110 0 chr1 75221322 75221468 -206972196 + MIR SINE MIR 37 198 -64 297 215 31 0 chr1 75223329 75223394 -206970270 - L2 LINE L2 0 3272 3206 698 270 39 17 chr1 75223446 75223676 -206969988 - LTR33 LTR ERVL 0 521 287 623 274 85 0 chr1 75223697 75223861 -206969803 - LTR33 LTR ERVL -339 182 5 852 208 12 6 chr1 75225194 75225367 -206968297 - L1PA16 LINE L1 -13 6153 5980 231 311 152 15 chr1 75225738 75225870 -206967794 + MIR SINE MIR 53 202 -60 538 206 11 0 chr1 75226753 75226845 -206966819 + MER5A DNA MER1_type 13 105 -84 194 150 25 0 chr1 75227406 75227446 -206966218 + CT-rich Low_complexity Low_complexity 3 43 0 2004 115 35 3 chr1 75228149 75228436 -206965228 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 75229733 75229755 -206963909 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 75229974 75230002 -206963662 + AT_rich Low_complexity Low_complexity 1 28 0 362 254 168 54 chr1 75230773 75230958 -206962706 + MIR SINE MIR 54 259 -3 2848 13 0 0 chr1 75231559 75231870 -206961794 - AluYa5 SINE Alu 0 311 1 1233 189 19 0 chr1 75232143 75232349 -206961315 - MER58A DNA MER1_type -9 215 6 495 272 68 50 chr1 75234251 75234681 -206958983 - L1MEd LINE L1 -4674 1866 1401 2895 3 0 0 chr1 75234681 75234992 -206958672 - AluYa5 SINE Alu 0 311 1 495 272 68 50 chr1 75234992 75235088 -206958576 - L1MEd LINE L1 -5139 1401 1308 1432 254 74 41 chr1 75235137 75235669 -206957995 - MLT1F1 LTR MaLR -7 560 10 1113 28 64 0 chr1 75235819 75235960 -206957704 + L1PA10 LINE L1 6019 6168 0 956 272 30 13 chr1 75235984 75236285 -206957379 - L1ME3A LINE L1 -10 6160 5855 1333 209 258 22 chr1 75237387 75238008 -206955656 + L1MCa LINE L1 1388 2154 -4272 489 81 73 0 chr1 75238028 75238151 -206955513 + (TA)n Simple_repeat Simple_repeat 2 133 0 19301 70 13 0 chr1 75238158 75240602 -206953062 - HERVL-A1 LTR ERVL -3178 2476 1 2521 97 20 9 chr1 75240602 75240994 -206952670 - MLT2A1 LTR ERVL 0 453 1 3587 136 0 4 chr1 75240994 75241540 -206952124 + MSTA-int LTR MaLR 1108 1651 0 2664 125 28 16 chr1 75241540 75241963 -206951701 + MSTA LTR MaLR 1 428 0 536 194 24 109 chr1 75241963 75242210 -206951454 + L1M4 LINE L1 4164 4389 -1757 3863 256 64 30 chr1 75242218 75244029 -206949635 + L1M3d LINE L1 39 1388 -4584 1776 110 96 15 chr1 75244029 75244301 -206949363 + AluSx SINE Alu 1 294 -18 3863 256 64 30 chr1 75244301 75244786 -206948878 + L1M3d LINE L1 1388 1855 -4117 982 220 85 21 chr1 75244897 75245133 -206948531 + AluJo SINE Alu 59 309 -3 2531 249 40 20 chr1 75245151 75246030 -206947634 + L1MCa LINE L1 2358 3254 -3172 3567 153 61 12 chr1 75246030 75246332 -206947332 - Tigger3b DNA MER2_type -2063 965 679 2143 109 18 0 chr1 75246332 75246652 -206947012 + AluSp SINE Alu 1 325 0 3567 153 61 12 chr1 75246652 75247170 -206946494 - Tigger3b DNA MER2_type -2349 679 1 743 233 81 0 chr1 75247224 75247396 -206946268 - MER5A DNA MER1_type 0 189 4 185 274 20 0 chr1 75247399 75247450 -206946214 - L2 LINE L2 -1897 1417 1366 618 244 34 48 chr1 75248744 75248953 -206944711 + LTR52 LTR ERVL 16 221 -200 220 350 83 25 chr1 75249192 75249312 -206944352 - L2 LINE L2 -38 3234 3108 365 378 84 4 chr1 75249491 75249729 -206943935 - L2 LINE L2 -508 2806 2550 249 330 22 11 chr1 75249731 75249822 -206943842 - L2 LINE L2 -37 3276 3185 493 255 125 41 chr1 75249839 75250196 -206943468 + MLT1J LTR MaLR 28 450 -61 900 188 80 40 chr1 75251273 75251497 -206942167 - MIR SINE MIR -28 234 2 906 191 25 10 chr1 75251886 75252085 -206941579 - L1MB2 LINE L1 -4 6167 5966 2662 184 30 13 chr1 75252101 75252946 -206940718 - L1MB2 LINE L1 -421 5762 4905 952 204 23 54 chr1 75253088 75253309 -206940355 + MER20 DNA MER1_type 6 219 0 22 56 0 0 chr1 75253765 75253801 -206939863 + AT_rich Low_complexity Low_complexity 1 36 0 619 294 8 77 chr1 75253877 75254125 -206939539 - L2 LINE L2 -240 3073 2843 224 303 76 76 chr1 75254311 75254430 -206939234 - L2 LINE L2 0 3272 3154 824 220 65 0 chr1 75254461 75254647 -206939017 + MIR SINE MIR 65 262 0 197 306 0 0 chr1 75254753 75254802 -206938862 - L2 LINE L2 -2 3311 3263 193 333 115 0 chr1 75255587 75255674 -206937990 + L2 LINE L2 3168 3264 -8 27 0 0 0 chr1 75256233 75256260 -206937404 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 75256947 75256968 -206936696 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 75257124 75257152 -206936512 + AT_rich Low_complexity Low_complexity 1 28 0 2030 137 3 3 chr1 75257156 75257455 -206936209 - AluSc SINE Alu -8 301 3 15288 54 6 1 chr1 75258122 75260840 -206932824 - L1PA5 LINE L1 -3 6151 3424 509 306 105 18 chr1 75262096 75262315 -206931349 - L3 LINE CR1 -2 1575 1338 27 29 0 0 chr1 75262694 75262728 -206930936 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 75263791 75263812 -206929852 + AT_rich Low_complexity Low_complexity 1 21 0 592 268 113 29 chr1 75264221 75264529 -206929135 + MIR SINE MIR 2 262 0 2528 100 17 0 chr1 75264915 75265264 -206928400 - THE1A LTR MaLR 0 355 1 11914 94 2 1 chr1 75265264 75266842 -206926822 - THE1A-int LTR MaLR 0 1580 1 2650 104 0 0 chr1 75266842 75267196 -206926468 - THE1A LTR MaLR 0 355 2 2509 193 2 38 chr1 75267818 75268392 -206925272 - L1 LINE L1 -2167 3979 3427 * 3054 151 21 4 chr1 75268390 75268940 -206924724 + L1PA16 LINE L1 5611 6165 -1 470 301 53 19 chr1 75269810 75270016 -206923648 + MIR SINE MIR 2 214 -48 2487 57 3 0 chr1 75270460 75270758 -206922906 - AluY SINE Alu -12 299 1 213 39 0 0 chr1 75271573 75271599 -206922065 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 6737 161 32 15 chr1 75272993 75273501 -206920163 - L1MA6 LINE L1 -2 6298 5800 183 80 0 0 chr1 75273501 75273526 -206920138 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 6737 161 32 15 chr1 75273526 75274657 -206919007 - L1MA6 LINE L1 -500 5800 4611 2067 122 27 3 chr1 75274657 75274952 -206918712 + AluSg SINE Alu 1 302 -8 6737 161 32 15 chr1 75274952 75275565 -206918099 - L1MA6 LINE L1 -1689 4611 4010 23 54 0 0 chr1 75275659 75275696 -206917968 + AT_rich Low_complexity Low_complexity 1 37 0 253 297 11 22 chr1 75275981 75276072 -206917592 - L2 LINE L2 -2 3311 3222 234 335 91 23 chr1 75277428 75277604 -206916060 + MIR SINE MIR 26 213 -49 190 352 76 0 chr1 75279323 75279428 -206914236 + L2 LINE L2 2932 3044 -228 456 19 0 0 chr1 75279604 75279657 -206914007 + (CA)n Simple_repeat Simple_repeat 2 54 0 204 362 92 12 chr1 75281843 75282006 -206911658 - MIR SINE MIR -40 222 47 363 357 128 16 chr1 75283651 75283970 -206909694 - L2 LINE L2 -400 2914 2560 548 172 227 0 chr1 75284043 75284206 -206909458 - MER69 DNA AcHobo 0 2526 2327 756 239 91 5 chr1 75284980 75285189 -206908475 + MIR SINE MIR 1 227 -35 385 325 72 24 chr1 75286381 75286547 -206907117 - MIR3 SINE MIR -22 186 13 304 345 42 21 chr1 75286930 75287072 -206906592 + MIR3 SINE MIR 37 181 -27 414 112 0 112 chr1 75288947 75289036 -206904628 + L1PA10 LINE L1 6090 6168 0 181 156 133 0 chr1 75289134 75289179 -206904485 + MIR SINE MIR 127 177 -85 23 33 0 0 chr1 75289393 75289423 -206904241 + AT_rich Low_complexity Low_complexity 1 30 0 573 293 29 19 chr1 75289701 75289975 -206903689 + LTR16A LTR ERVL 135 450 0 294 319 166 6 chr1 75290199 75290356 -206903308 - MIR3 SINE MIR -14 194 13 181 137 59 20 chr1 75290366 75290417 -206903247 + T-rich Low_complexity Low_complexity 3 55 0 206 292 52 10 chr1 75291084 75291180 -206902484 - MIR SINE MIR -61 201 102 677 232 34 23 chr1 75291207 75291384 -206902280 - MIR SINE MIR -24 238 60 2128 98 3 7 chr1 75291384 75291670 -206901994 + AluSq SINE Alu 1 285 -28 24 0 0 0 chr1 75291670 75291694 -206901970 + AT_rich Low_complexity Low_complexity 1 24 0 532 250 18 0 chr1 75291714 75291826 -206901838 + MER81 DNA DNA 1 114 0 651 154 81 13 chr1 75292108 75292257 -206901407 - L1MA10 LINE L1 -1 6333 6175 402 113 200 0 chr1 75292268 75292348 -206901316 + L1MB1 LINE L1 6050 6145 -44 326 282 103 45 chr1 75293100 75293256 -206900408 + MIR SINE MIR 71 235 -27 404 210 24 32 chr1 75294146 75294270 -206899394 + MLT1D LTR MaLR 208 330 -175 721 0 22 0 chr1 75294275 75294364 -206899300 + (TCTA)n Simple_repeat Simple_repeat 4 94 0 1568 235 44 28 chr1 75294366 75294795 -206898869 + MLT1D LTR MaLR 70 505 0 286 333 81 10 chr1 75294977 75295076 -206898588 - L2 LINE L2 -1 3271 3166 2205 113 21 43 chr1 75295289 75295661 -206898003 - THE1B LTR MaLR 0 364 1 11371 101 9 1 chr1 75295661 75297229 -206896435 - THE1B-int LTR MaLR 0 1580 1 1182 143 14 29 chr1 75297229 75297438 -206896226 - THE1B LTR MaLR 0 364 159 246 158 0 0 chr1 75297539 75297577 -206896087 + MER66A LTR ERV1 441 478 0 524 186 12 24 chr1 75297582 75297722 -206895942 - L1M4 LINE L1 -469 5705 5564 391 299 96 19 chr1 75298088 75298182 -206895482 - Charlie8 DNA MER1_type -167 174 62 401 0 20 0 chr1 75298182 75298231 -206895433 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 391 299 96 19 chr1 75298231 75298293 -206895371 - Charlie8 DNA MER1_type -279 62 6 1581 167 32 3 chr1 75298315 75298597 -206895067 - L1PA16 LINE L1 0 6166 5877 1064 204 36 55 chr1 75298922 75299251 -206894413 + MER33 DNA MER1_type 2 324 0 1507 80 5 0 chr1 75300236 75300437 -206893227 + L1PA8 LINE L1 5971 6172 0 282 277 43 43 chr1 75301836 75301930 -206891734 - LTR33 LTR ERVL -297 224 131 27 29 0 0 chr1 75302481 75302515 -206891149 + AT_rich Low_complexity Low_complexity 1 34 0 417 219 1 19 chr1 75302654 75302759 -206890905 - HsTC2 DNA Tc2 0 1900 2 526 250 71 71 chr1 75302983 75303167 -206890497 - MIR3 SINE MIR -9 199 16 32 67 0 0 chr1 75303453 75303513 -206890151 + AT_rich Low_complexity Low_complexity 1 60 0 317 354 34 17 chr1 75304122 75304297 -206889367 + MIR SINE MIR 8 185 -77 21 0 0 0 chr1 75304357 75304378 -206889286 + AT_rich Low_complexity Low_complexity 1 21 0 4420 31 1 6 chr1 75304430 75305238 -206888426 - L1P2 LINE L1 -374 5781 4980 1975 34 4 0 chr1 75305238 75305472 -206888192 + L1PA4 LINE L1 5914 6152 -3 21 0 0 0 chr1 75305837 75305858 -206887806 + AT_rich Low_complexity Low_complexity 1 21 0 243 296 178 89 chr1 75306945 75307158 -206886506 - L2 LINE L2 -14 3258 3027 344 356 8 0 chr1 75309222 75309354 -206884310 - MIR3 SINE MIR -3 205 73 290 348 60 64 chr1 75310074 75310307 -206883357 - L2 LINE L2 -14 3258 3027 281 340 211 10 chr1 75310593 75310802 -206882862 + MIR SINE MIR 1 251 -11 482 384 83 6 chr1 75311011 75311350 -206882314 + L3 LINE CR1 915 1279 -298 2132 263 46 63 chr1 75311827 75312303 -206881361 - L1MB5 LINE L1 -3 6171 5688 465 155 0 0 chr1 75312303 75312374 -206881290 - MER66B LTR ERV1 0 486 416 2132 263 46 63 chr1 75312374 75313083 -206880581 - L1MB5 LINE L1 -486 5688 4941 386 225 54 54 chr1 75313145 75313274 -206880390 - MIR SINE MIR 0 262 134 302 311 40 40 chr1 75313295 75313446 -206880218 + L2 LINE L2 3163 3313 0 323 309 27 0 chr1 75313621 75313731 -206879933 + MIR SINE MIR 41 153 -109 414 224 37 0 chr1 75313813 75313920 -206879744 + MIR SINE MIR 149 259 -3 294 354 0 10 chr1 75313922 75314018 -206879646 - MIR SINE MIR -111 151 57 2119 125 0 41 chr1 75314048 75314368 -206879296 - AluSx SINE Alu -5 307 1 374 170 0 10 chr1 75314985 75315085 -206878579 + CT-rich Low_complexity Low_complexity 1 99 0 281 311 47 27 chr1 75315410 75315558 -206878106 + L3b LINE CR1 1116 1266 -317 1439 165 11 0 chr1 75316605 75316865 -206876799 - L1PA16 LINE L1 0 6166 5904 458 259 86 19 chr1 75318682 75318844 -206874820 + MER5A DNA MER1_type 17 189 0 282 348 119 62 chr1 75320310 75320812 -206872852 - L2 LINE L2 -116 3156 2616 2509 32 0 0 chr1 75320812 75321123 -206872541 - L1P LINE L1 -810 5336 5026 3498 27 0 0 chr1 75321123 75321530 -206872134 + L1PA3 LINE L1 5746 6153 -2 390 281 66 83 chr1 75321622 75321924 -206871740 - L2 LINE L2 -787 2527 2231 369 302 50 13 chr1 75322081 75322240 -206871424 + MLT1I LTR MaLR 243 407 -2 328 326 116 29 chr1 75322247 75322419 -206871245 + MIR SINE MIR 37 223 -39 473 315 119 36 chr1 75322451 75322753 -206870911 - L3 LINE CR1 -795 782 456 299 191 15 0 chr1 75323693 75323761 -206869903 + (TA)n Simple_repeat Simple_repeat 1 69 0 312 315 0 0 chr1 75323762 75323851 -206869813 + L1MC4 LINE L1 6615 6703 -1339 754 157 55 44 chr1 75325309 75325505 -206868159 - MER6 DNA MER2_type 0 865 -63 524 302 57 72 chr1 75325527 75325928 -206867736 - L2 LINE L2 0 3313 2919 399 315 67 28 chr1 75326399 75326577 -206867087 - MIR SINE MIR -58 204 20 763 266 225 12 chr1 75327015 75327357 -206866307 - L2 LINE L2 -1 3312 2898 550 111 0 0 chr1 75327573 75327645 -206866019 - U4 snRNA snRNA -73 72 1 349 304 91 3 chr1 75327786 75327847 -206865817 - MIR SINE MIR -1 207 153 531 236 150 26 chr1 75327847 75328080 -206865584 - MIR SINE MIR 0 262 1 349 304 91 3 chr1 75328080 75328206 -206865458 - MIR SINE MIR -55 153 3 315 266 97 0 chr1 75328330 75328443 -206865221 + MIR SINE MIR 68 191 -71 219 237 209 2 chr1 75328515 75328615 -206865049 - MIR SINE MIR -77 131 15 27 0 0 0 chr1 75328962 75328989 -206864675 + AT_rich Low_complexity Low_complexity 1 27 0 2317 130 30 5 chr1 75328990 75329397 -206864267 - L1MA5A LINE L1 -6 6291 5875 3316 218 48 29 chr1 75329405 75329518 -206864146 - L1ME1 LINE L1 -5 6161 6052 850 189 154 0 chr1 75329518 75329608 -206864056 + MER33 DNA MER1_type 1 76 -2509 387 0 0 0 chr1 75329608 75329651 -206864013 + (TA)n Simple_repeat Simple_repeat 1 43 0 850 189 154 0 chr1 75329651 75329840 -206863824 + MER33 DNA MER1_type 76 323 -1 3316 218 48 29 chr1 75329840 75330616 -206863048 - L1ME1 LINE L1 -114 6052 5255 1805 281 92 27 chr1 75330614 75331543 -206862121 - L1MEc LINE L1 -5248 1148 160 * 2593 127 65 7 chr1 75332132 75332550 -206861114 - L1PA8A LINE L1 -9 6122 5681 542 305 62 73 chr1 75332961 75333176 -206860488 + L2 LINE L2 2947 3158 -155 2014 127 3 0 chr1 75333176 75333460 -206860204 - AluSx SINE Alu -27 285 1 542 305 62 73 chr1 75333460 75333615 -206860049 + L2 LINE L2 3158 3313 0 5585 170 0 0 chr1 75333940 75335262 -206858402 - L1PA5 LINE L1 -1 6153 4787 242 318 0 0 chr1 75335759 75335822 -206857842 - MIR3 SINE MIR -31 177 115 21573 33 1 0 chr1 75337003 75340390 -206853274 - L1PA3 LINE L1 -3 6152 2762 1502 127 143 40 chr1 75341038 75341360 -206852304 - L1MA8 LINE L1 -7 6284 5930 2032 117 100 14 chr1 75341367 75341772 -206851892 + L1 LINE L1 4996 5423 -743 745 193 21 0 chr1 75342763 75342908 -206850756 - L1PB4 LINE L1 -3 6153 6006 254 271 118 0 chr1 75343529 75343614 -206850050 + MIR SINE MIR 168 262 0 668 289 110 9 chr1 75343629 75343857 -206849807 + MIR SINE MIR 9 259 -3 2223 178 18 7 chr1 75344309 75344747 -206848917 - L1MB3 LINE L1 -1 6182 5740 22 35 0 0 chr1 75345363 75345392 -206848272 + AT_rich Low_complexity Low_complexity 1 29 0 322 281 67 22 chr1 75345862 75345997 -206847667 - MIR3 SINE MIR -43 165 25 461 263 86 70 chr1 75346911 75347023 -206846641 - MIR SINE MIR -1 261 143 2228 172 0 3 chr1 75347023 75347389 -206846275 + MLT1A1 LTR MaLR 1 365 0 461 263 86 70 chr1 75347389 75347462 -206846202 - MIR SINE MIR -119 143 73 21 36 0 0 chr1 75347478 75347506 -206846158 + AT_rich Low_complexity Low_complexity 1 28 0 2234 123 0 0 chr1 75347694 75347995 -206845669 - AluSx SINE Alu -9 303 3 193 411 36 9 chr1 75348059 75348171 -206845493 - L3 LINE CR1 -159 1418 1304 458 297 79 6 chr1 75348287 75348452 -206845212 + MER5B DNA MER1_type 1 177 -1 501 234 62 8 chr1 75349273 75349401 -206844263 - HAL1 LINE L1 -1596 911 777 1749 158 0 7 chr1 75349645 75349924 -206843740 - AluJb SINE Alu -34 278 2 2607 29 0 0 chr1 75350929 75351237 -206842427 - L1PA5 LINE L1 -559 5596 5289 4668 31 9 0 chr1 75351237 75351786 -206841878 + L1PA5 LINE L1 5597 6151 -3 249 298 139 32 chr1 75351855 75352013 -206841651 + L2 LINE L2 2888 3062 -210 1968 166 86 27 chr1 75352743 75353184 -206840480 + MLT1C LTR MaLR 1 467 0 216 300 163 0 chr1 75353210 75353290 -206840374 + MIR3 SINE MIR 106 198 -10 275 252 84 69 chr1 75353568 75353699 -206839965 + Charlie8 DNA MER1_type 2 134 -2283 248 239 43 54 chr1 75353811 75353903 -206839761 + Charlie8 DNA MER1_type 240 2417 0 237 182 13 26 chr1 75355022 75355099 -206838565 + CT-rich Low_complexity Low_complexity 4 79 0 710 304 24 4 chr1 75355119 75355369 -206838295 + MIR SINE MIR 5 259 -3 2320 113 0 0 chr1 75355759 75356068 -206837596 - AluSq SINE Alu -4 309 1 377 153 14 0 chr1 75356558 75356630 -206837034 + CT-rich Low_complexity Low_complexity 4 76 0 281 358 67 15 chr1 75357528 75357662 -206836002 - MIR3 SINE MIR -6 202 62 1634 201 68 15 chr1 75357742 75357966 -206835698 + MER6 DNA MER2_type 1 249 -616 336 48 0 0 chr1 75357966 75358008 -206835656 + (TG)n Simple_repeat Simple_repeat 1 42 0 1634 201 68 15 chr1 75358008 75358107 -206835557 + MER6 DNA MER2_type 249 341 -524 229 143 48 0 chr1 75358118 75358160 -206835504 - Alu SINE Alu -7 293 250 2237 112 0 0 chr1 75358230 75358525 -206835139 - AluSg SINE Alu -15 295 1 1475 104 46 17 chr1 75358526 75358767 -206834897 + MER6 DNA MER2_type 618 865 0 192 179 0 0 chr1 75358776 75358815 -206834849 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 2252 104 3 0 chr1 75358867 75359165 -206834499 - AluSq SINE Alu -10 303 5 1208 227 134 67 chr1 75359650 75360406 -206833258 + L1MD3 LINE L1 7024 7982 -13 2145 118 48 34 chr1 75361713 75362070 -206831594 - THE1B LTR MaLR -2 362 1 264 245 46 93 chr1 75362375 75362439 -206831225 + MIR SINE MIR 53 118 -144 2787 6 0 10 chr1 75362439 75362751 -206830913 + AluYa5 SINE Alu 1 309 -2 264 245 46 93 chr1 75362751 75362837 -206830827 + MIR SINE MIR 118 196 -66 243 61 0 0 chr1 75363391 75363424 -206830240 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 829 293 36 55 chr1 75363533 75363973 -206829691 + LTR16A LTR ERVL 1 432 -18 184 355 118 0 chr1 75363978 75364054 -206829610 - MIR SINE MIR -120 142 58 468 0 0 0 chr1 75364654 75364706 -206828958 + (TA)n Simple_repeat Simple_repeat 2 53 0 484 235 33 33 chr1 75364762 75364915 -206828749 - L2 LINE L2 0 3313 3161 585 293 129 19 chr1 75364980 75365243 -206828421 - L2 LINE L2 -339 2975 2684 262 317 174 25 chr1 75365329 75365490 -206828174 + MIR SINE MIR 1 185 -77 224 376 35 65 chr1 75367825 75368227 -206825437 - L2 LINE L2 -1 3271 2882 271 331 76 33 chr1 75368603 75368787 -206824877 - L2 LINE L2 -885 2429 2238 2071 106 40 23 chr1 75369486 75369789 -206823875 + AluSx SINE Alu 1 308 -4 305 298 158 71 chr1 75369838 75370539 -206823125 - L2 LINE L2 -1184 2130 1369 257 345 26 32 chr1 75370569 75370732 -206822932 - MIR SINE MIR -69 193 33 213 277 0 0 chr1 75370884 75370931 -206822733 - L2 LINE L2 -16 3256 3210 526 326 92 9 chr1 75370957 75371184 -206822480 - MIR SINE MIR -13 249 4 2068 95 0 0 chr1 75371301 75371565 -206822099 + AluSq SINE Alu 1 264 -49 2295 246 38 5 chr1 75372128 75372730 -206820934 - MLT1E2 LTR MaLR 0 626 5 183 42 0 0 chr1 75372800 75372824 -206820840 + (A)n Simple_repeat Simple_repeat 1 24 0 207 256 0 0 chr1 75374130 75374173 -206819491 + (TG)n Simple_repeat Simple_repeat 2 44 0 370 301 37 15 chr1 75374202 75374338 -206819326 - L2 LINE L2 -1 3271 3133 216 0 0 0 chr1 75374392 75374416 -206819248 + (TA)n Simple_repeat Simple_repeat 2 25 0 2190 168 40 17 chr1 75374914 75375336 -206818328 - Tigger2a DNA MER2_type -1 433 2 624 254 86 103 chr1 75376702 75377111 -206816553 + MLT1J LTR MaLR 110 511 0 284 329 92 59 chr1 75377286 75377438 -206816226 - L2 LINE L2 0 3272 3116 21 0 0 0 chr1 75377461 75377482 -206816182 + AT_rich Low_complexity Low_complexity 1 21 0 1027 145 88 53 chr1 75377558 75377786 -206815878 + MER46A DNA MER2_type 1 236 0 249 322 78 0 chr1 75378177 75378267 -206815397 - L2 LINE L2 -7 3265 3169 184 250 42 0 chr1 75379047 75379095 -206814569 - MIR3 SINE MIR -20 188 139 2466 71 0 3 chr1 75379222 75379531 -206814133 - AluY SINE Alu -3 308 1 242 194 194 0 chr1 75379606 75379678 -206813986 - MER91C DNA MER1_type -35 105 20 347 264 72 57 chr1 75380337 75380529 -206813135 - MIR3 SINE MIR -64 144 2 1781 171 4 0 chr1 75381036 75381316 -206812348 + AluSx SINE Alu 1 281 -31 195 0 56 28 chr1 75381320 75381356 -206812308 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3556 196 71 43 chr1 75381521 75382643 -206811021 - L1MB7 LINE L1 0 6184 5024 1639 167 4 0 chr1 75382643 75382906 -206810758 + AluJo SINE Alu 25 288 -24 3556 196 71 43 chr1 75382906 75383373 -206810291 - L1MB7 LINE L1 -1160 5024 4572 * 3631 224 12 9 chr1 75383371 75384229 -206809435 - L1MB7 LINE L1 -1782 4364 3505 450 325 83 0 chr1 75384735 75384892 -206808772 + L2 LINE L2 3103 3272 0 310 123 0 92 chr1 75385541 75385606 -206808058 - MLT2C2 LTR ERVL -1 519 456 270 0 0 0 chr1 75385750 75385780 -206807884 + (CA)n Simple_repeat Simple_repeat 2 31 0 2132 218 12 2 chr1 75385782 75386190 -206807474 - MLT2C2 LTR ERVL -52 412 1 219 69 0 0 chr1 75386597 75386626 -206807038 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 261 378 74 7 chr1 75386657 75386792 -206806872 - L2 LINE L2 -1 3271 3128 258 304 94 22 chr1 75387307 75387445 -206806219 + L2 LINE L2 3160 3307 -6 681 161 12 6 chr1 75388020 75388253 -206805411 + AluJ SINE Alu 13 296 -16 285 151 0 0 chr1 75388707 75388760 -206804904 + (TA)n Simple_repeat Simple_repeat 2 54 0 196 308 103 0 chr1 75388762 75388840 -206804824 - L2 LINE L2 -18 3295 3210 221 320 96 16 chr1 75388852 75388977 -206804687 + L2 LINE L2 2626 2760 -554 1495 256 169 39 chr1 75389613 75390922 -206802742 + L2 LINE L2 1630 3313 0 754 173 175 11 chr1 75391309 75391567 -206802097 + L1MA6 LINE L1 5133 5436 -743 4673 137 21 1 chr1 75391572 75392348 -206801316 + L1MA6 LINE L1 5510 6300 0 1876 122 30 30 chr1 75392354 75392649 -206801015 - AluSg SINE Alu -15 295 1 182 229 197 0 chr1 75392944 75393005 -206800659 - MIR SINE MIR -12 250 178 213 65 0 0 chr1 75394385 75394416 -206799248 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr1 75394714 75394738 -206798926 + AT_rich Low_complexity Low_complexity 1 24 0 189 162 27 0 chr1 75394769 75394806 -206798858 - MIR SINE MIR -107 155 118 680 316 44 4 chr1 75394937 75395162 -206798502 + MIR SINE MIR 20 253 -9 291 54 0 0 chr1 75395406 75395443 -206798221 + (T)n Simple_repeat Simple_repeat 1 37 0 1372 148 8 13 chr1 75395654 75395891 -206797773 - MER46A DNA MER2_type 0 236 1 236 365 10 0 chr1 75396070 75396166 -206797498 + MIR SINE MIR 84 180 -82 185 292 177 0 chr1 75396207 75396320 -206797344 + MIR SINE MIR 49 181 -81 297 283 40 20 chr1 75396415 75396514 -206797150 + MIR SINE MIR 112 212 -50 2332 93 3 3 chr1 75397365 75397705 -206795959 + AluSg SINE Alu 1 340 0 2436 67 3 19 chr1 75397854 75398168 -206795496 - AluY SINE Alu -2 309 1 364 314 21 29 chr1 75398189 75398329 -206795335 + MIR SINE MIR 53 191 -71 4745 197 34 23 chr1 75398558 75399561 -206794103 + L1MB7 LINE L1 4202 5231 -947 2165 121 0 0 chr1 75399561 75399859 -206793805 + AluSg SINE Alu 1 298 -12 4745 197 34 23 chr1 75399859 75400587 -206793077 + L1MB7 LINE L1 5231 5950 -228 695 174 65 0 chr1 75400603 75400758 -206792906 + L1MB7 LINE L1 6018 6182 -2 1321 258 100 9 chr1 75401274 75401900 -206791764 - L2 LINE L2 0 3313 2626 383 295 174 0 chr1 75404772 75404921 -206788743 + MIR SINE MIR 74 248 -14 4892 139 12 0 chr1 75405062 75405825 -206787839 - L1PA16 LINE L1 -9 6157 5386 196 339 0 0 chr1 75405991 75406056 -206787608 - L2 LINE L2 0 3272 3208 1689 197 0 3 chr1 75406876 75407185 -206786479 - AluJo SINE Alu -4 308 1 1591 149 149 68 chr1 75407534 75407574 -206786090 - MSTA LTR MaLR 0 428 393 2214 82 29 0 chr1 75407574 75407890 -206785774 + AluSg SINE Alu 1 324 0 1591 149 149 68 chr1 75407890 75408243 -206785421 - MSTA LTR MaLR -35 393 1 294 306 153 82 chr1 75409941 75410281 -206783383 - L2 LINE L2 0 3272 2909 531 272 0 8 chr1 75410364 75410489 -206783175 + L2 LINE L2 3190 3313 0 22 56 0 0 chr1 75411275 75411311 -206782353 + AT_rich Low_complexity Low_complexity 1 36 0 190 260 52 39 chr1 75411357 75411434 -206782230 - MIR SINE MIR -69 193 116 32 81 0 0 chr1 75411580 75411654 -206782010 + AT_rich Low_complexity Low_complexity 1 74 0 2270 83 7 3 chr1 75411946 75412246 -206781418 - AluSq SINE Alu -12 301 1 315 319 152 14 chr1 75413458 75413668 -206779996 - L2 LINE L2 -501 2813 2575 332 302 101 7 chr1 75414409 75414548 -206779116 - L3b LINE CR1 -193 1390 1239 33 56 0 0 chr1 75415057 75415111 -206778553 + AT_rich Low_complexity Low_complexity 1 54 0 522 269 71 0 chr1 75417423 75417564 -206776100 - L2 LINE L2 0 3313 3163 7438 28 8 0 chr1 75417939 75419619 -206774045 - L1PA4 LINE L1 -5 6150 4465 15675 39 6 0 chr1 75419719 75422464 -206771200 + L1PA4 LINE L1 3362 6115 -40 32612 58 2 2 chr1 75422595 75426938 -206766726 - L1PA4 LINE L1 -1803 4343 1 2117 120 42 31 chr1 75427630 75427989 -206765675 - THE1B LTR MaLR -1 363 1 23 0 0 0 chr1 75428247 75428270 -206765394 + AT_rich Low_complexity Low_complexity 1 23 0 425 238 233 25 chr1 75428770 75428972 -206764692 - MIR SINE MIR -9 253 10 769 322 124 8 chr1 75429803 75430182 -206763482 - L3b LINE CR1 -9 1574 1152 225 350 62 0 chr1 75430724 75430821 -206762843 + L2 LINE L2 3156 3258 -14 412 288 72 13 chr1 75431492 75431645 -206762019 + MIR SINE MIR 12 173 -89 429 273 114 0 chr1 75432180 75432312 -206761352 + MIR3 SINE MIR 48 194 -14 2980 26 0 0 chr1 75432576 75432924 -206760740 + L1PA2 LINE L1 5807 6154 -1 22 35 0 0 chr1 75434278 75434307 -206759357 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 0 36 chr1 75434549 75434577 -206759087 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7296 34 9 38 chr1 75434577 75435523 -206758141 - L1PA4 LINE L1 -16 6139 5200 40324 45 1 1 chr1 75435759 75440945 -206752719 - L1PA4 LINE L1 -955 5191 1 219 274 65 0 chr1 75442603 75442665 -206750999 - MIR SINE MIR -158 104 39 475 284 120 19 chr1 75444736 75444944 -206748720 - MIR SINE MIR -13 249 21 259 274 12 48 chr1 75445315 75445399 -206748265 - MIR SINE MIR -158 104 24 361 216 43 31 chr1 75445461 75445478 -206748186 - L1MA10 LINE L1 -2 6332 6316 1698 196 32 23 chr1 75445478 75445953 -206747711 - L1ME2 LINE L1 -10 6154 5676 280 215 0 0 chr1 75446197 75446262 -206747402 - LTR67 LTR ERVL -4 553 489 2421 110 0 0 chr1 75446264 75446574 -206747090 + AluSg SINE Alu 1 310 0 810 249 149 4 chr1 75447219 75447468 -206746196 + L2 LINE L2 1259 1543 -1771 463 297 47 0 chr1 75447526 75447674 -206745990 - MIR SINE MIR -41 221 67 646 283 166 35 chr1 75448233 75448668 -206744996 + L2 LINE L2 2813 3304 -9 28 29 0 0 chr1 75450553 75450588 -206743076 + AT_rich Low_complexity Low_complexity 1 35 0 321 259 152 36 chr1 75450589 75450701 -206742963 - MIR SINE MIR -112 150 26 292 310 39 23 chr1 75450700 75450829 -206742835 + L3 LINE CR1 685 815 -762 * 460 146 21 0 chr1 75452007 75452103 -206741561 + MLT2B2 LTR ERVL 1 98 -417 62 26 0 0 chr1 75452117 75452193 -206741471 + AT_rich Low_complexity Low_complexity 1 76 0 260 241 0 0 chr1 75452200 75452258 -206741406 + MLT2B1 LTR ERVL 111 168 -352 252 109 0 22 chr1 75452255 75452301 -206741363 + MLT2C2 LTR ERVL 420 464 0 * 284 277 0 0 chr1 75453284 75453349 -206740315 - LTR33 LTR ERVL -136 385 321 252 310 52 35 chr1 75453389 75453505 -206740159 - LTR33A LTR ERVL -333 190 73 21 82 0 0 chr1 75453615 75453664 -206740000 + AT_rich Low_complexity Low_complexity 1 49 0 251 391 70 0 chr1 75454674 75454789 -206738875 + L2 LINE L2 3143 3265 -7 226 316 26 8 chr1 75456942 75457059 -206736605 - LTR67 LTR ERVL -4 553 435 258 394 24 24 chr1 75457447 75457617 -206736047 - MIR SINE MIR -73 189 20 710 234 73 88 chr1 75457868 75458265 -206735399 - MLT1J LTR MaLR 0 511 121 320 279 27 36 chr1 75458305 75458416 -206735248 + MIR SINE MIR 147 256 -6 609 245 37 43 chr1 75458570 75458758 -206734906 + MIR SINE MIR 73 259 -3 581 284 110 57 chr1 75458996 75459260 -206734404 - L2 LINE L2 -17 3296 3019 2686 307 137 43 chr1 75459332 75460387 -206733277 + L2 LINE L2 83 1364 -1950 1980 136 3 0 chr1 75460387 75460673 -206732991 + AluSx SINE Alu 1 287 -25 2686 307 137 43 chr1 75460673 75461335 -206732329 + L2 LINE L2 1364 1962 -1352 22 35 0 0 chr1 75462069 75462098 -206731566 + AT_rich Low_complexity Low_complexity 1 29 0 1729 309 69 22 chr1 75462172 75463167 -206730497 - L2 LINE L2 -5 3308 2276 522 305 23 12 chr1 75463216 75463472 -206730192 + MIR SINE MIR 4 262 0 453 323 101 0 chr1 75463701 75463899 -206729765 + L2 LINE L2 2259 2476 -838 707 250 62 11 chr1 75463899 75464075 -206729589 + L2 LINE L2 2782 2966 -348 2166 53 8 19 chr1 75464328 75464594 -206729070 + AluY SINE Alu 36 298 -13 257 316 107 28 chr1 75464600 75464815 -206728849 - MLT1J LTR MaLR -50 461 230 285 169 15 15 chr1 75464873 75464938 -206728726 + MER116 DNA Mariner 16 80 0 228 256 26 13 chr1 75464939 75464968 -206728696 - MLT1L LTR MaLR -332 283 256 2356 65 0 7 chr1 75464968 75465259 -206728405 - AluY SINE Alu -22 289 1 228 256 26 13 chr1 75465259 75465307 -206728357 - MLT1L LTR MaLR -359 256 205 523 268 95 0 chr1 75465725 75465893 -206727771 - MIR SINE MIR -46 216 33 1972 114 45 10 chr1 75466714 75467003 -206726661 + AluSg SINE Alu 1 299 -11 1146 293 91 17 chr1 75468422 75468897 -206724767 - L2 LINE L2 -1075 2239 1730 349 231 95 14 chr1 75468918 75468933 -206724731 - L1MA10 LINE L1 -1 6333 6319 553 229 90 52 chr1 75468933 75469221 -206724443 - L1ME1 LINE L1 -5 6161 5863 3688 232 74 18 chr1 75469365 75469687 -206723977 - L1MEc LINE L1 -2467 3748 3445 2125 129 0 0 chr1 75469687 75469974 -206723690 - AluSx SINE Alu -25 287 1 3688 232 74 18 chr1 75469974 75471151 -206722513 - L1MEc LINE L1 -2770 3445 2179 568 259 155 16 chr1 75471151 75471468 -206722196 - MER57A LTR ERV1 0 403 43 940 230 64 9 chr1 75471493 75471819 -206721845 - L1MEc LINE L1 -4227 2169 1826 593 199 0 28 chr1 75471826 75471967 -206721697 - L1MEc LINE L1 -4616 1780 1644 444 306 135 9 chr1 75471996 75472218 -206721446 - L2 LINE L2 -1607 1707 1458 469 343 43 14 chr1 75472225 75472432 -206721232 + MIR SINE MIR 34 246 -16 280 374 67 44 chr1 75473207 75473504 -206720160 - L2 LINE L2 0 3272 2969 326 286 0 0 chr1 75473531 75473622 -206720042 - L2 LINE L2 0 3313 3223 * 678 322 145 34 chr1 75473603 75474140 -206719524 - L2 LINE L2 -351 2963 2367 205 355 0 0 chr1 75474947 75475009 -206718655 - MER91B DNA MER1_type -128 62 1 * 549 255 196 21 chr1 75475009 75475232 -206718432 + L2 LINE L2 3050 3313 0 21 36 0 0 chr1 75475932 75475960 -206717704 + AT_rich Low_complexity Low_complexity 1 28 0 834 141 7 0 chr1 75475986 75476121 -206717543 - AluSg/x SINE Alu -3 307 172 402 363 44 28 chr1 75476434 75476682 -206716982 - L2 LINE L2 -3 3269 3018 402 295 97 56 chr1 75477830 75478169 -206715495 - L2 LINE L2 -17 3296 2944 31 58 0 0 chr1 75478795 75478847 -206714817 + AT_rich Low_complexity Low_complexity 1 52 0 463 277 52 14 chr1 75480597 75480777 -206712887 + MIR SINE MIR 38 221 -41 454 245 44 78 chr1 75481668 75481872 -206711792 + MIR SINE MIR 34 230 -32 298 294 24 0 chr1 75483094 75483179 -206710485 - L2 LINE L2 -1 3271 3185 428 234 177 14 chr1 75483305 75483446 -206710218 - MIR SINE MIR -6 256 93 200 241 52 17 chr1 75483983 75484041 -206709623 - MIR3 SINE MIR 0 208 149 23 33 0 0 chr1 75484221 75484251 -206709413 + AT_rich Low_complexity Low_complexity 1 30 0 641 242 145 0 chr1 75485658 75485844 -206707820 - MIR SINE MIR -11 251 39 370 329 147 54 chr1 75486242 75486649 -206707015 - L2 LINE L2 -407 2907 2463 1883 129 96 12 chr1 75486852 75487160 -206706504 - MER47A DNA MER2_type -1959 364 24 1628 169 51 4 chr1 75487160 75487461 -206706203 + AluJb SINE Alu 1 314 0 1883 129 96 12 chr1 75487461 75487485 -206706179 - MER47A DNA MER2_type -2299 24 3 599 251 191 15 chr1 75487544 75487743 -206705921 - MIR SINE MIR -24 238 5 21 36 0 0 chr1 75488156 75488184 -206705480 + AT_rich Low_complexity Low_complexity 1 28 0 309 118 0 0 chr1 75488713 75488764 -206704900 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 2257 121 3 13 chr1 75489490 75489878 -206703786 - AluSp SINE Alu 0 385 1 1599 173 10 42 chr1 75490374 75490680 -206702984 + AluJb SINE Alu 1 296 -16 634 259 68 64 chr1 75490704 75490924 -206702740 + MIR SINE MIR 8 228 -34 242 313 12 0 chr1 75491129 75491212 -206702452 + L2 LINE L2 3186 3269 -3 260 367 11 0 chr1 75492831 75492921 -206700743 + MIR3 SINE MIR 66 156 -52 234 310 80 75 chr1 75493035 75493222 -206700442 - MIR3 SINE MIR 0 208 21 267 79 0 0 chr1 75493624 75493662 -206700002 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 364 257 110 9 chr1 75493713 75493822 -206699842 - L2 LINE L2 -4 3309 3190 189 274 48 16 chr1 75493825 75493887 -206699777 - L2 LINE L2 -56 3257 3194 625 362 78 19 chr1 75493900 75494259 -206699405 + L2 LINE L2 2892 3271 -1 720 246 144 0 chr1 75494364 75494551 -206699113 + MIR SINE MIR 48 261 -1 314 324 29 37 chr1 75494669 75494805 -206698859 - MIR SINE MIR -108 154 20 185 305 195 33 chr1 75494830 75495040 -206698624 - L2 LINE L2 -546 2768 2525 246 116 0 0 chr1 75495845 75495888 -206697776 + (CA)n Simple_repeat Simple_repeat 2 44 0 188 387 0 0 chr1 75496750 75496825 -206696839 + MIR SINE MIR 182 256 -6 335 299 39 16 chr1 75496840 75496967 -206696697 - MIR3 SINE MIR -72 136 7 245 353 128 0 chr1 75497175 75497277 -206696387 - L2 LINE L2 -2 3270 3156 513 365 62 32 chr1 75497528 75497898 -206695766 - L2 LINE L2 -2 3270 2890 258 360 22 22 chr1 75498003 75498142 -206695522 - L2 LINE L2 -7 3265 3127 346 321 69 30 chr1 75498437 75498568 -206695096 - L2 LINE L2 0 3313 3178 553 260 40 7 chr1 75498832 75498982 -206694682 + MIR SINE MIR 5 159 -103 233 225 0 63 chr1 75499045 75499140 -206694524 - MIR SINE MIR -60 148 62 380 298 87 12 chr1 75499325 75499486 -206694178 + MER5A DNA MER1_type 6 189 0 1073 170 16 0 chr1 75499558 75499740 -206693924 + MER5A DNA MER1_type 1 185 -4 420 272 9 9 chr1 75500037 75500151 -206693513 + MIR3 SINE MIR 81 194 -14 189 0 0 0 chr1 75501108 75501129 -206692535 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 75501616 75501638 -206692026 + AT_rich Low_complexity Low_complexity 1 22 0 2420 97 0 0 chr1 75502879 75503187 -206690477 + AluSg SINE Alu 1 308 -2 308 379 57 44 chr1 75503210 75503508 -206690156 + L2 LINE L2 2955 3256 -16 241 260 0 26 chr1 75505243 75505320 -206688344 + A-rich Low_complexity Low_complexity 3 77 0 1991 93 0 21 chr1 75507268 75507547 -206686117 - AluSc SINE Alu -1 308 36 215 295 47 67 chr1 75507670 75507819 -206685845 + L2 LINE L2 2829 2974 -298 1225 113 5 62 chr1 75508241 75508435 -206685229 - AluSx SINE Alu -129 183 1 770 241 97 5 chr1 75508501 75508696 -206684968 + MIR SINE MIR 11 223 -39 429 319 44 61 chr1 75510145 75510379 -206683285 - MIR SINE MIR -30 232 3 406 347 16 0 chr1 75510606 75510727 -206682937 - L2 LINE L2 0 3272 3150 470 229 25 8 chr1 75510802 75510920 -206682744 + MIR SINE MIR 116 235 -27 199 197 0 40 chr1 75510936 75511012 -206682652 + (TTA)n Simple_repeat Simple_repeat 2 74 0 339 346 67 24 chr1 75511032 75511330 -206682334 - L2 LINE L2 -215 3057 2701 2292 112 0 0 chr1 75511330 75511656 -206682008 - AluSg SINE Alu 0 326 1 797 297 59 8 chr1 75511785 75512021 -206681643 + MIR SINE MIR 15 262 0 247 267 33 22 chr1 75512034 75512124 -206681540 + L2 LINE L2 3223 3313 0 314 156 16 0 chr1 75512790 75512854 -206680810 + (TG)n Simple_repeat Simple_repeat 1 65 0 1603 112 54 5 chr1 75513363 75513586 -206680078 + AluSx SINE Alu 60 293 -19 1684 194 70 5 chr1 75513609 75513980 -206679684 - MLT2C1 LTR ERVL 0 397 3 328 297 122 70 chr1 75515308 75515537 -206678127 + L3 LINE CR1 1309 1549 -28 198 371 30 35 chr1 75515687 75515884 -206677780 - MIR SINE MIR -16 246 51 257 311 0 14 chr1 75515886 75515960 -206677704 - MIR SINE MIR -170 92 20 353 303 101 8 chr1 75516576 75516695 -206676969 + MIR3 SINE MIR 9 138 -70 500 272 98 54 chr1 75517087 75517311 -206676353 + MIR SINE MIR 29 262 0 300 111 0 0 chr1 75517316 75517361 -206676303 + (TA)n Simple_repeat Simple_repeat 1 45 0 192 349 0 0 chr1 75517438 75517504 -206676160 - L2 LINE L2 0 3272 3207 299 65 22 0 chr1 75517823 75517869 -206675795 + (GA)n Simple_repeat Simple_repeat 2 48 0 293 295 40 107 chr1 75517895 75518044 -206675620 - L2 LINE L2 0 3272 3134 24 53 0 0 chr1 75518184 75518222 -206675442 + AT_rich Low_complexity Low_complexity 1 38 0 906 198 18 0 chr1 75518474 75518641 -206675023 + FAM SINE Alu 1 170 -5 272 226 16 16 chr1 75518960 75519022 -206674642 + MIR SINE MIR 76 137 -125 423 156 25 113 chr1 75519135 75519295 -206674369 + L1M4 LINE L1 5572 5717 -467 2161 137 13 16 chr1 75519306 75519679 -206673985 - L1PB4 LINE L1 -2 6154 5783 415 226 78 26 chr1 75521292 75521407 -206672257 + L2 LINE L2 3192 3312 -1 633 244 59 80 chr1 75521515 75521661 -206672003 + MIR SINE MIR 16 164 -98 1607 173 48 24 chr1 75521661 75521956 -206671708 + AluJo SINE Alu 1 302 -10 2407 156 24 9 chr1 75521957 75522379 -206671285 - MSTA LTR MaLR 0 428 1 633 244 59 80 chr1 75522379 75522468 -206671196 + MIR SINE MIR 163 248 -14 281 244 141 0 chr1 75522946 75523024 -206670640 - L2 LINE L2 0 3313 3225 995 185 27 40 chr1 75523030 75523252 -206670412 + AluJo SINE Alu 87 305 -7 979 302 88 60 chr1 75523339 75524099 -206669565 - L2 LINE L2 -191 3081 2299 320 214 146 0 chr1 75524283 75524372 -206669292 - MIR SINE MIR -4 258 157 184 392 33 17 chr1 75524474 75524594 -206669070 - L2 LINE L2 -2026 1288 1167 812 319 4 11 chr1 75525079 75525339 -206668325 - MIR SINE MIR -3 259 2 237 254 0 28 chr1 75526017 75526088 -206667576 - MER5B DNA MER1_type -109 69 1 466 288 125 5 chr1 75526190 75526374 -206667290 - MIR SINE MIR 0 262 57 350 287 19 10 chr1 75526411 75526584 -206667080 + MIR SINE MIR 32 260 -2 221 170 0 85 chr1 75527408 75527455 -206666209 - L2 LINE L2 -16 3297 3255 188 261 31 46 chr1 75527473 75527538 -206666126 + MIR3 SINE MIR 93 156 -52 2158 116 0 13 chr1 75527886 75528189 -206665475 + AluSx SINE Alu 1 299 -13 500 264 106 14 chr1 75529228 75529357 -206664307 + MER112 DNA MER1_type 2 118 -142 231 88 0 0 chr1 75529357 75529391 -206664273 + (CTATT)n Simple_repeat Simple_repeat 4 37 0 1751 164 55 0 chr1 75529391 75529683 -206663981 - AluSx SINE Alu -4 308 1 500 264 106 14 chr1 75529683 75529760 -206663904 + MER112 DNA MER1_type 117 228 -32 381 312 120 87 chr1 75529857 75530248 -206663416 + L2 LINE L2 2863 3266 -6 645 288 54 5 chr1 75530411 75530595 -206663069 + MIR SINE MIR 1 193 -69 284 289 72 10 chr1 75530611 75530708 -206662956 + L2 LINE L2 3196 3298 -15 23 33 0 0 chr1 75531567 75531597 -206662067 + AT_rich Low_complexity Low_complexity 1 30 0 667 184 129 0 chr1 75531605 75531752 -206661912 - MSTD LTR MaLR -225 171 6 410 293 144 33 chr1 75532381 75532596 -206661068 - MIR SINE MIR -12 250 12 4689 137 25 4 chr1 75532903 75533715 -206659949 - L1MA5 LINE L1 -7 6293 5465 638 173 67 7 chr1 75533715 75533865 -206659799 - L1MA5 LINE L1 -2085 4061 3903 329 294 105 28 chr1 75534427 75534570 -206659094 - MIR3 SINE MIR -48 160 7 229 270 180 0 chr1 75534574 75534663 -206659001 - L2 LINE L2 0 3272 3168 329 256 25 27 chr1 75535391 75535549 -206658115 - MIR SINE MIR -63 145 1 298 315 42 21 chr1 75536517 75536660 -206657004 - MIR SINE MIR -50 212 67 240 309 113 101 chr1 75536797 75537143 -206656521 + L2 LINE L2 2907 3256 -16 1201 121 51 105 chr1 75537227 75537540 -206656124 - L1MA9 LINE L1 -4 6308 6013 366 238 12 0 chr1 75538220 75538304 -206655360 - MER58A DNA MER1_type 0 121 37 188 320 0 40 chr1 75538789 75538864 -206654800 + L2 LINE L2 3028 3099 -173 417 262 118 84 chr1 75538923 75539244 -206654420 - L2 LINE L2 -38 3275 2944 527 157 118 56 chr1 75539338 75539516 -206654148 - MER53 DNA DNA 0 189 1 305 435 16 16 chr1 75540308 75540616 -206653048 - L2 LINE L2 -664 2650 2343 346 353 72 0 chr1 75540619 75540772 -206652892 - MIR3 SINE MIR -10 198 35 234 105 0 0 chr1 75541059 75541097 -206652567 + (GA)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr1 75541745 75541771 -206651893 + (TTG)n Simple_repeat Simple_repeat 2 27 0 303 236 79 57 chr1 75541971 75542111 -206651553 - MIR SINE MIR -87 175 33 1118 213 20 42 chr1 75542302 75542651 -206651013 - L1ME3A LINE L1 -5 6165 5821 344 290 92 8 chr1 75543309 75543440 -206650224 + MIR SINE MIR 96 237 -25 397 262 25 33 chr1 75543576 75543698 -206649966 + MIR SINE MIR 31 151 -111 622 309 35 10 chr1 75544131 75544332 -206649332 - MIR3 SINE MIR 0 208 3 187 276 121 0 chr1 75544406 75544464 -206649200 + L2 LINE L2 3188 3252 -20 557 246 204 14 chr1 75544697 75544917 -206648747 + MIR SINE MIR 1 262 0 194 409 61 26 chr1 75544939 75545054 -206648610 + L2 LINE L2 3129 3247 -25 207 182 0 0 chr1 75545062 75545095 -206648569 + polypurine Low_complexity Low_complexity 6 38 0 405 347 27 0 chr1 75545144 75545291 -206648373 + MIR SINE MIR 47 197 -65 1256 199 188 40 chr1 75546222 75546643 -206647021 - MLT1D LTR MaLR -1 504 22 872 189 121 0 chr1 75546677 75546867 -206646797 + MER58A DNA MER1_type 4 216 -8 409 346 74 48 chr1 75547102 75547333 -206646331 + L2 LINE L2 2948 3184 -88 356 202 81 61 chr1 75547419 75547518 -206646146 + MIR3 SINE MIR 101 201 -7 2024 143 3 0 chr1 75548356 75548672 -206644992 - AluSq SINE Alu 0 317 1 233 258 65 0 chr1 75549063 75549125 -206644539 + MIR SINE MIR 123 188 -74 234 140 0 40 chr1 75549390 75549434 -206644230 - Alu SINE Alu -1 300 258 1865 96 0 16 chr1 75549434 75549683 -206643981 - AluSg SINE Alu -31 279 35 186 300 0 0 chr1 75549688 75549728 -206643936 - L2 LINE L2 -15 3298 3259 28 48 0 0 chr1 75551528 75551570 -206642094 + AT_rich Low_complexity Low_complexity 1 42 0 1798 164 3 3 chr1 75551574 75551882 -206641782 + AluJo SINE Alu 1 308 0 278 280 126 42 chr1 75551949 75552092 -206641572 - MER5B DNA MER1_type -2 176 22 625 296 80 9 chr1 75552105 75552318 -206641346 + MIR SINE MIR 7 234 -28 201 238 238 0 chr1 75552399 75552462 -206641202 + MIR SINE MIR 30 107 -155 1160 179 91 3 chr1 75552577 75552874 -206640790 - MER33 DNA MER1_type -1 323 1 231 241 0 3 chr1 75552896 75552952 -206640712 + MIR SINE MIR 95 141 -67 411 268 38 108 chr1 75553518 75553731 -206639933 + MIR SINE MIR 4 201 -61 468 358 57 66 chr1 75554591 75554926 -206638738 - L2 LINE L2 -9 3263 2932 320 311 29 0 chr1 75555288 75555391 -206638273 + L2 LINE L2 2517 2622 -692 769 218 6 6 chr1 75555408 75555573 -206638091 - MLT1A1 LTR MaLR -2 363 199 6750 59 18 0 chr1 75555577 75556654 -206637010 + L1P2 LINE L1 4436 5527 -627 284 106 85 0 chr1 75556678 75556725 -206636939 - MLT1A1 LTR MaLR -314 51 1 563 286 141 15 chr1 75556755 75556954 -206636710 - MIR SINE MIR -28 234 11 452 308 113 23 chr1 75556959 75557180 -206636484 + L2 LINE L2 2621 2861 -453 196 354 15 0 chr1 75557454 75557519 -206636145 + L2 LINE L2 3191 3256 -16 874 236 43 43 chr1 75557552 75557810 -206635854 - MIR SINE MIR 0 262 5 211 224 13 66 chr1 75558250 75558326 -206635338 + CT-rich Low_complexity Low_complexity 1 72 0 244 272 6 98 chr1 75558336 75558509 -206635155 + MIR SINE MIR 84 240 -22 383 180 22 56 chr1 75559360 75559449 -206634215 + L2 LINE L2 3186 3271 -1 493 298 87 0 chr1 75559788 75559949 -206633715 - MIR SINE MIR -31 231 57 1090 234 23 26 chr1 75560207 75560515 -206633149 - L1ME3A LINE L1 -32 6138 5832 203 291 18 0 chr1 75560771 75560826 -206632838 + MIR SINE MIR 83 138 -70 386 310 69 13 chr1 75561249 75561481 -206632183 + L1ME4a LINE L1 5872 6116 -5 334 288 23 30 chr1 75561557 75561689 -206631975 - MIR SINE MIR -92 170 40 21 36 0 0 chr1 75562091 75562119 -206631545 + AT_rich Low_complexity Low_complexity 1 28 0 2187 275 57 42 chr1 75562399 75563156 -206630508 + MER45C DNA AcHobo 6 773 -180 727 158 7 7 chr1 75563184 75563323 -206630341 + L1MC3 LINE L1 7638 7776 -9 876 166 13 0 chr1 75563329 75563480 -206630184 + MER45C DNA AcHobo 800 952 -1 438 321 170 9 chr1 75563606 75563818 -206629846 - MIR SINE MIR -12 250 5 195 42 0 0 chr1 75567427 75567451 -206626213 + (CA)n Simple_repeat Simple_repeat 2 25 0 553 67 0 67 chr1 75568783 75568873 -206624791 + AluJ/FLAM SINE Alu 1 84 -228 504 278 98 26 chr1 75571146 75571380 -206622284 + MER115 DNA AcHobo 1 251 -442 461 148 12 12 chr1 75571562 75571643 -206622021 + MER115 DNA AcHobo 492 572 -121 663 263 88 5 chr1 75572040 75572231 -206621433 - MIR SINE MIR -37 225 22 2736 7 0 3 chr1 75572696 75572997 -206620667 + AluYa5 SINE Alu 1 300 -11 219 103 0 0 chr1 75573784 75573823 -206619841 + (T)n Simple_repeat Simple_repeat 1 39 0 28 29 0 0 chr1 75574548 75574583 -206619081 + AT_rich Low_complexity Low_complexity 1 35 0 1623 147 9 74 chr1 75576385 75576711 -206616953 + AluSq SINE Alu 1 305 -8 1681 151 12 52 chr1 75576721 75577046 -206616618 + AluSx SINE Alu 1 312 0 357 301 77 19 chr1 75579004 75579198 -206614466 - MIR SINE MIR -51 211 14 399 366 38 45 chr1 75579311 75579576 -206614088 + L2 LINE L2 3000 3262 -10 223 357 48 0 chr1 75579585 75579669 -206613995 - MIR SINE MIR -85 123 36 442 84 56 0 chr1 75582645 75582716 -206610948 - MER53 DNA DNA -113 76 2 25 51 0 0 chr1 75582732 75582771 -206610893 + AT_rich Low_complexity Low_complexity 1 39 0 321 286 11 11 chr1 75583886 75583977 -206609687 - MIR SINE MIR -65 143 53 229 246 56 120 chr1 75586611 75586753 -206606911 + L2 LINE L2 3180 3312 -1 27 0 0 0 chr1 75587730 75587757 -206605907 + AT_rich Low_complexity Low_complexity 1 27 0 356 274 0 0 chr1 75591737 75591821 -206601843 + MIR3 SINE MIR 118 201 -7 538 321 6 6 chr1 75592020 75592188 -206601476 - MIR3 SINE MIR -11 197 30 2231 117 3 0 chr1 75592350 75592650 -206601014 + AluSq SINE Alu 1 301 -12 221 324 201 11 chr1 75592651 75592830 -206600834 + L3b LINE CR1 1240 1452 -131 187 265 0 0 chr1 75593863 75593912 -206599752 + L2 LINE L2 3261 3309 -4 234 232 194 71 chr1 75593974 75594129 -206599535 + MER5B DNA MER1_type 4 177 -1 * 311 186 8 136 chr1 75594032 75594150 -206599514 - MER5A DNA MER1_type -85 104 2 22 70 0 0 chr1 75594796 75594839 -206598825 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr1 75595075 75595104 -206598560 + AT_rich Low_complexity Low_complexity 1 29 0 248 361 155 0 chr1 75595269 75595366 -206598298 + MIR SINE MIR 32 143 -65 6221 56 15 0 chr1 75596225 75596962 -206596702 - LTR5 LTR ERVK -221 748 1 3784 114 44 3 chr1 75596962 75597557 -206596107 - HERV9 LTR ERV1 -7696 703 85 363 215 11 0 chr1 75597628 75597721 -206595943 + LTR30 LTR ERV1 550 643 -79 651 140 0 0 chr1 75597723 75597823 -206595841 + LTR12 LTR ERV1 615 714 0 1675 136 33 4 chr1 75597823 75598193 -206595471 - L1M2 LINE L1 -728 5563 5183 2543 55 7 0 chr1 75598193 75598501 -206595163 - AluY SINE Alu -1 310 1 297 356 53 23 chr1 75598529 75598661 -206595003 + L2 LINE L2 3137 3272 0 196 259 79 122 chr1 75598671 75598860 -206594804 + L2 LINE L2 2899 3079 -193 219 207 35 17 chr1 75598975 75599033 -206594631 + L2 LINE L2 3214 3272 0 1296 337 97 26 chr1 75599355 75600450 -206593214 - L2 LINE L2 -610 2704 1533 467 103 0 5 chr1 75600451 75600574 -206593090 + HERVL18 LTR ERVL 2273 2452 -3595 * 844 138 0 7 chr1 75600573 75600718 -206592946 + HERVL18 LTR ERVL 2720 2863 -3184 1300 120 40 106 chr1 75600724 75600998 -206592666 + LTR18A LTR ERVL 102 357 0 181 270 40 27 chr1 75601333 75601407 -206592257 - L2 LINE L2 -2 3311 3237 189 305 0 84 chr1 75601545 75601640 -206592024 - MIR3 SINE MIR -3 205 119 * 654 237 147 0 chr1 75601605 75601761 -206591903 - MER5A DNA MER1_type -7 182 4 2494 237 96 12 chr1 75601887 75602709 -206590955 + L1MEc LINE L1 35 925 -5471 3095 185 85 90 chr1 75602739 75603653 -206590011 + MER21A LTR ERV1 15 924 -7 268 232 48 32 chr1 75603719 75603844 -206589820 + L1MEc LINE L1 1063 1189 -5207 970 172 61 0 chr1 75605733 75605896 -206587768 + FRAM SINE Alu 1 169 -7 459 344 95 7 chr1 75608060 75608345 -206585319 + L3b LINE CR1 1111 1420 -163 191 225 0 0 chr1 75610624 75610664 -206583000 + L3 LINE CR1 1533 1572 -5 2334 112 3 10 chr1 75611973 75612285 -206581379 + AluSx SINE Alu 1 310 -2 632 80 0 35 chr1 75613128 75613241 -206580423 + (TA)n Simple_repeat Simple_repeat 1 109 0 510 307 27 13 chr1 75614083 75614233 -206579431 + MIR SINE MIR 22 173 -89 249 253 138 0 chr1 75617035 75617122 -206576542 - MIR3 SINE MIR 0 208 110 327 65 0 0 chr1 75617310 75617356 -206576308 + (TG)n Simple_repeat Simple_repeat 2 47 0 441 229 31 109 chr1 75617664 75617810 -206575854 - MER5B DNA MER1_type -1 177 48 1691 164 4 4 chr1 75617810 75618073 -206575591 - AluSx SINE Alu -49 263 1 441 229 31 109 chr1 75618073 75618118 -206575546 - MER5B DNA MER1_type -130 48 1 337 310 78 0 chr1 75618791 75618933 -206574731 + MIR SINE MIR 3 155 -107 216 264 38 0 chr1 75618953 75619006 -206574658 + L2 LINE L2 3259 3313 0 215 250 38 50 chr1 75619214 75619294 -206574370 - L3 LINE CR1 -16 1561 1483 757 254 11 21 chr1 75619483 75619672 -206573992 + MIR SINE MIR 72 258 -4 779 314 105 21 chr1 75619705 75620077 -206573587 - L3 LINE CR1 -379 1198 796 246 330 130 15 chr1 75620120 75620251 -206573413 + MIR SINE MIR 38 201 -61 2287 97 3 0 chr1 75620251 75620540 -206573124 + AluSp SINE Alu 1 290 -23 246 330 130 15 chr1 75620540 75620608 -206573056 + MIR SINE MIR 201 260 -2 865 364 100 17 chr1 75620662 75621294 -206572370 - L3 LINE CR1 -771 806 123 219 207 35 17 chr1 75621609 75621667 -206571997 - L2 LINE L2 0 3272 3214 196 259 79 122 chr1 75621782 75621971 -206571693 - L2 LINE L2 -193 3079 2899 297 356 53 23 chr1 75621981 75622113 -206571551 - L2 LINE L2 0 3272 3137 2426 69 7 0 chr1 75622141 75622444 -206571220 + AluY SINE Alu 1 305 -6 1418 339 95 26 chr1 75622573 75623899 -206569765 - L2 LINE L2 -363 2951 1533 499 103 0 5 chr1 75623900 75624023 -206569641 + HERVL18 LTR ERVL 2273 2452 -3595 * 899 143 0 7 chr1 75624020 75624167 -206569497 + HERVL18 LTR ERVL 2718 2863 -3184 1014 121 21 0 chr1 75624173 75624314 -206569350 + LTR18A LTR ERVL 102 245 -112 2421 167 0 13 chr1 75624343 75625025 -206568639 + HERVL18 LTR ERVL 2868 3579 -2468 669 117 11 0 chr1 75625027 75625121 -206568543 + HERVL18 LTR ERVL 4394 4488 -1559 514 206 0 0 chr1 75625180 75625272 -206568392 + HERVL18 LTR ERVL 5946 6037 -10 2082 152 32 78 chr1 75625425 75625799 -206567865 + LTR18A LTR ERVL 1 357 0 184 314 0 43 chr1 75626346 75626416 -206567248 - MIR3 SINE MIR -3 205 139 * 637 244 147 0 chr1 75626406 75626562 -206567102 - MER5A DNA MER1_type -7 182 4 2795 230 94 21 chr1 75626688 75627539 -206566125 + L1MEc LINE L1 35 947 -5449 3445 184 85 91 chr1 75627540 75628455 -206565209 + MER21A LTR ERV1 15 924 -7 1370 272 29 93 chr1 75628521 75629521 -206564143 + L1MEc LINE L1 1063 1998 -4398 437 241 0 0 chr1 75629548 75629627 -206564037 + FRAM/FAM SINE Alu 4 82 -94 241 290 0 0 chr1 75630053 75630115 -206563549 + L2 LINE L2 3251 3312 -1 192 40 0 0 chr1 75630119 75630144 -206563520 + (CA)n Simple_repeat Simple_repeat 2 26 0 1383 243 84 34 chr1 75630301 75630741 -206562923 - MLT1C LTR MaLR 0 467 6 1020 203 4 37 chr1 75630759 75631001 -206562663 + MER96B DNA MER1_type? 1 234 -183 2309 222 67 28 chr1 75631688 75632287 -206561377 - LTR27 LTR ERV1 0 636 15 2464 102 42 3 chr1 75632574 75632927 -206560737 - L1PA16 LINE L1 -9 6157 5791 2226 78 0 4 chr1 75633010 75633355 -206560309 + AluY SINE Alu 1 344 0 1428 226 6 22 chr1 75633910 75634253 -206559411 + AluJo SINE Alu 2 339 0 424 290 101 48 chr1 75634270 75634708 -206558956 + L1ME LINE L1 5314 5774 -347 21 57 0 0 chr1 75634720 75634755 -206558909 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr1 75634796 75634822 -206558842 + AT_rich Low_complexity Low_complexity 1 26 0 264 167 22 67 chr1 75634898 75634988 -206558676 + L1ME4a LINE L1 6036 6121 0 200 354 31 15 chr1 75635021 75635151 -206558513 - MIR3 SINE MIR -11 197 66 240 209 47 70 chr1 75635651 75635737 -206557927 - L2 LINE L2 -263 3009 2926 493 267 51 40 chr1 75636328 75636504 -206557160 + MIR SINE MIR 28 205 -57 239 253 11 35 chr1 75637358 75637445 -206556219 + MIR SINE MIR 17 101 -107 216 292 283 0 chr1 75638212 75638332 -206555332 - MIR SINE MIR -50 212 59 503 286 118 17 chr1 75638427 75638605 -206555059 + MIR SINE MIR 39 234 -28 326 294 194 6 chr1 75638711 75638881 -206554783 - MIR SINE MIR -28 234 33 367 385 32 5 chr1 75639405 75639623 -206554041 - L2 LINE L2 -340 2974 2751 321 315 54 0 chr1 75639758 75639888 -206553776 + MER117 DNA MER1_type 2 138 -59 2119 115 10 0 chr1 75639896 75640184 -206553480 + AluSx SINE Alu 3 293 -19 499 313 19 9 chr1 75640230 75640425 -206553239 + MIR SINE MIR 9 205 -57 251 264 0 0 chr1 75640964 75641017 -206552647 + L2 LINE L2 3259 3311 -2 2094 133 0 0 chr1 75641136 75641429 -206552235 + AluSg SINE Alu 1 293 -17 188 259 62 49 chr1 75641641 75641722 -206551942 + L3 LINE CR1 375 456 -1121 302 358 53 13 chr1 75641848 75641999 -206551665 - MER5B DNA MER1_type -1 177 21 206 356 0 29 chr1 75642024 75642128 -206551536 + L3 LINE CR1 616 716 -861 216 325 36 0 chr1 75642221 75642304 -206551360 + MIR SINE MIR 164 249 -13 * 372 239 125 54 chr1 75642284 75642468 -206551196 - MIR SINE MIR -58 204 8 284 283 106 0 chr1 75642488 75642601 -206551063 - MIR3 SINE MIR -18 190 66 359 41 20 0 chr1 75642611 75642660 -206551004 + (GGA)n Simple_repeat Simple_repeat 2 51 0 468 165 0 0 chr1 75644879 75644964 -206548700 + AluSp/q SINE Alu 229 313 0 25 0 0 0 chr1 75645101 75645126 -206548538 + AT_rich Low_complexity Low_complexity 1 25 0 1498 211 0 4 chr1 75645403 75645682 -206547982 + AluJo SINE Alu 11 288 -24 22 0 0 0 chr1 75645683 75645705 -206547959 + AT_rich Low_complexity Low_complexity 1 22 0 211 100 0 60 chr1 75646949 75646999 -206546665 + (TTTCC)n Simple_repeat Simple_repeat 4 50 0 826 37 9 37 chr1 75647072 75647180 -206546484 - L1PA7 LINE L1 0 6154 6050 433 229 73 92 chr1 75648363 75648581 -206545083 + MER58C DNA MER1_type 2 215 0 325 289 107 0 chr1 75649056 75649177 -206544487 - L2 LINE L2 -1368 1946 1813 237 285 143 13 chr1 75649901 75650309 -206543355 - L1M4 LINE L1 -3616 3028 2561 716 291 20 12 chr1 75650563 75650807 -206542857 - L1ME1 LINE L1 -5 6161 5916 1169 128 45 0 chr1 75650808 75650987 -206542677 + AluSq SINE Alu 1 187 -126 3359 64 0 26 chr1 75650993 75651448 -206542216 - L1P LINE L1 -2287 3859 3417 21 36 0 0 chr1 75652411 75652439 -206541225 + AT_rich Low_complexity Low_complexity 1 28 0 229 355 116 0 chr1 75652616 75652737 -206540927 - LTR16C LTR ERVL -104 387 253 956 207 37 61 chr1 75653373 75653394 -206540270 - L1M4 LINE L1 -5370 1172 1152 2739 20 0 3 chr1 75653394 75653700 -206539964 + AluYb8 SINE Alu 1 305 -13 956 207 37 61 chr1 75653700 75654075 -206539589 - L1M4 LINE L1 -5390 1152 820 333 313 33 46 chr1 75654255 75654408 -206539256 - L1M4 LINE L1 -5717 929 553 1030 75 37 14 chr1 75654595 75655047 -206538617 + HSATII Satellite Satellite 1 462 -14 1046 74 15 0 chr1 75655059 75655262 -206538402 + HSATII Satellite Satellite 1 206 -90 843 256 19 21 chr1 75656058 75656373 -206537291 - MER34C LTR ERV1 -158 427 70 2516 28 0 0 chr1 75657152 75657439 -206536225 + L1P2 LINE L1 5408 5694 -460 1459 194 10 38 chr1 75657670 75657984 -206535680 - AluJo SINE Alu -7 305 1 371 324 0 9 chr1 75658006 75658111 -206535553 + LTR67 LTR ERVL 49 152 -405 240 35 0 0 chr1 75658234 75658263 -206535401 + (TA)n Simple_repeat Simple_repeat 2 30 0 1741 117 99 4 chr1 75658263 75658536 -206535128 - AluSx SINE Alu -13 299 1 347 325 74 42 chr1 75658546 75658857 -206534807 - L2 LINE L2 -1072 2242 1922 715 143 9 0 chr1 75659552 75659664 -206534000 - AluSg/x SINE Alu -12 300 188 615 243 78 51 chr1 75659889 75660144 -206533520 + MLT1D LTR MaLR 206 505 0 261 312 51 51 chr1 75660504 75660642 -206533022 - MIR3 SINE MIR -62 146 9 2942 48 0 11 chr1 75660933 75661287 -206532377 + L1PA5 LINE L1 5805 6154 0 1473 245 104 13 chr1 75661590 75662043 -206531621 - MLT1D LTR MaLR 0 505 12 1696 123 8 4 chr1 75662424 75662668 -206530996 - AluSg SINE Alu -65 245 1 1338 209 50 28 chr1 75662677 75662730 -206530934 + MLT1D LTR MaLR 175 225 -280 2110 171 64 8 chr1 75662730 75663105 -206530559 - MSTD LTR MaLR 0 396 1 1338 209 50 28 chr1 75663105 75663372 -206530292 + MLT1D LTR MaLR 225 502 -3 1959 143 17 0 chr1 75663499 75663786 -206529878 + AluSx SINE Alu 1 292 -20 338 333 120 0 chr1 75664018 75664201 -206529463 + MIR SINE MIR 57 261 -1 718 267 148 29 chr1 75664479 75664823 -206528841 + MLT1K LTR MaLR 2 386 -202 1461 192 29 48 chr1 75665040 75665353 -206528311 + AluJb SINE Alu 1 307 -5 22 56 0 0 chr1 75665391 75665427 -206528237 + AT_rich Low_complexity Low_complexity 1 36 0 780 216 97 26 chr1 75665527 75665754 -206527910 + LTR48 LTR ERV1 543 785 -2 209 225 12 12 chr1 75665874 75665954 -206527710 + A-rich Low_complexity Low_complexity 3 82 0 2055 84 52 3 chr1 75665981 75666268 -206527396 + AluY SINE Alu 1 301 -10 713 196 30 24 chr1 75666268 75666436 -206527228 + L1M4 LINE L1 5181 5349 -797 44 0 0 0 chr1 75666545 75666589 -206527075 + AT_rich Low_complexity Low_complexity 1 44 0 1511 202 34 0 chr1 75666660 75666952 -206526712 + AluJb SINE Alu 1 302 -10 303 276 121 48 chr1 75667630 75667920 -206525744 - L1ME3A LINE L1 -10 6160 5850 23 0 0 0 chr1 75667959 75667982 -206525682 + AT_rich Low_complexity Low_complexity 1 23 0 2355 65 7 3 chr1 75667990 75668282 -206525382 + AluY SINE Alu 11 303 -8 299 192 14 0 chr1 75668708 75668781 -206524883 + GA-rich Low_complexity Low_complexity 3 76 0 534 70 0 0 chr1 75669003 75669074 -206524590 + (TCTTG)n Simple_repeat Simple_repeat 2 72 0 1527 189 44 0 chr1 75669075 75669224 -206524440 - AluJb SINE Alu -30 282 114 261 0 0 0 chr1 75669224 75669253 -206524411 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1527 189 44 0 chr1 75669253 75669373 -206524291 - AluJb SINE Alu -198 114 1 261 333 99 7 chr1 75670158 75670299 -206523365 - MIR SINE MIR -20 242 89 717 307 111 33 chr1 75671358 75671755 -206521909 - LTR16A LTR ERVL -7 443 16 228 233 0 0 chr1 75671792 75671852 -206521812 - MIR SINE MIR -78 130 71 322 298 32 16 chr1 75671992 75672116 -206521548 - MIR SINE MIR -14 248 123 472 272 98 27 chr1 75672461 75672645 -206521019 - MIR SINE MIR -4 258 62 286 255 19 108 chr1 75672669 75672826 -206520838 - L2 LINE L2 0 3313 3171 776 237 55 40 chr1 75672841 75673115 -206520549 - MER102b DNA MER1_type -49 292 15 2220 120 3 7 chr1 75674166 75674474 -206519190 + AluSx SINE Alu 1 307 -5 257 207 52 0 chr1 75674775 75674833 -206518831 - MIR SINE MIR -71 191 131 275 313 123 12 chr1 75675566 75675729 -206517935 + L3 LINE CR1 1385 1565 -12 199 397 8 8 chr1 75675755 75675881 -206517783 + MIR SINE MIR 27 152 -110 258 317 24 19 chr1 75676053 75676171 -206517493 + MIR SINE MIR 37 154 -58 22839 92 8 11 chr1 75676263 75676340 -206517324 + L1PA7 LINE L1 2288 2364 -3790 2086 123 0 7 chr1 75676340 75676640 -206517024 + AluSc SINE Alu 1 298 -11 22839 92 8 11 chr1 75676640 75680431 -206513233 + L1PA7 LINE L1 2364 6148 -6 283 287 10 40 chr1 75681057 75681158 -206512506 - L2 LINE L2 -2 3270 3173 244 326 99 7 chr1 75681230 75681371 -206512293 - MIR SINE MIR -55 207 54 279 0 0 0 chr1 75683132 75683163 -206510501 + (CA)n Simple_repeat Simple_repeat 2 32 0 226 245 19 19 chr1 75683580 75683633 -206510031 - MIR SINE MIR -84 124 72 1321 297 124 19 chr1 75683736 75684365 -206509299 + L2 LINE L2 2181 2875 -439 206 286 0 0 chr1 75684368 75684417 -206509247 + (TG)n Simple_repeat Simple_repeat 2 50 0 4403 126 29 27 chr1 75684431 75685161 -206508503 - L1MA7 LINE L1 -2 6289 5559 677 116 0 0 chr1 75685163 75685258 -206508406 - LTR12 LTR ERV1 -136 578 484 273 281 66 0 chr1 75685258 75685379 -206508285 - LTR30 LTR ERV1 -70 652 524 1466 114 8 53 chr1 75685467 75685712 -206507952 - LTR12 LTR ERV1 -480 234 1 30444 103 6 7 chr1 75685712 75689920 -206503744 - HERV9 LTR ERV1 0 8399 4196 16952 124 29 17 chr1 75689919 75692991 -206500673 - HERV9 LTR ERV1 -4422 3977 671 * 8226 54 9 0 chr1 75692991 75693948 -206499716 - LTR5 LTR ERVK -3 966 1 16952 124 29 17 chr1 75693948 75694543 -206499121 - HERV9 LTR ERV1 -7728 671 85 393 215 11 0 chr1 75694614 75694707 -206498957 + LTR30 LTR ERV1 550 643 -79 695 140 0 0 chr1 75694709 75694809 -206498855 + LTR12 LTR ERV1 615 714 0 2061 141 37 11 chr1 75694809 75695179 -206498485 - L1M2 LINE L1 -728 6279 5887 2617 38 0 31 chr1 75695179 75695499 -206498165 - AluY SINE Alu -1 310 1 2061 141 37 11 chr1 75695499 75695661 -206498003 - L1M2 LINE L1 -1120 5887 5731 404 280 195 21 chr1 75695781 75696017 -206497647 + LTR67 LTR ERVL 268 544 -13 10799 153 49 7 chr1 75696125 75699495 -206494169 - L1M2 LINE L1 -1701 5161 1380 228 35 0 0 chr1 75699495 75699524 -206494140 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10799 153 49 7 chr1 75699524 75700963 -206492701 - L1M2 LINE L1 -5482 1380 3 579 340 46 8 chr1 75701348 75701586 -206492078 + MIR SINE MIR 6 252 -10 274 277 169 0 chr1 75702285 75702368 -206491296 - MIR SINE MIR -95 113 17 2427 91 0 25 chr1 75702806 75703124 -206490540 - AluSq SINE Alu -3 310 1 222 91 0 0 chr1 75703507 75703540 -206490124 + (CA)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr1 75704136 75704162 -206489502 + AT_rich Low_complexity Low_complexity 1 26 0 220 307 143 50 chr1 75704240 75704380 -206489284 + MER5A DNA MER1_type 37 189 0 288 287 23 0 chr1 75704818 75704905 -206488759 + MIR SINE MIR 36 124 -84 24 0 0 0 chr1 75705878 75705902 -206487762 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 75705908 75705937 -206487727 + AT_rich Low_complexity Low_complexity 1 29 0 1184 182 48 19 chr1 75706123 75706332 -206487332 + MER20 DNA MER1_type 1 215 -4 185 367 0 0 chr1 75707596 75707656 -206486008 - MIR SINE MIR -113 149 90 480 190 30 21 chr1 75708459 75708606 -206485058 - L1MC/D LINE L1 -661 5501 5367 264 225 14 14 chr1 75708597 75708668 -206484996 - L1MC/D LINE L1 -755 5411 5341 * 252 154 0 0 chr1 75708674 75708726 -206484938 + (TA)n Simple_repeat Simple_repeat 2 53 0 1978 163 47 0 chr1 75708738 75709058 -206484606 - MER7A DNA MER2_type -13 333 1 189 241 0 0 chr1 75709087 75709141 -206484523 + (TA)n Simple_repeat Simple_repeat 1 54 0 235 172 69 17 chr1 75709144 75709202 -206484462 + L1MC4 LINE L1 2007 2067 -4359 216 250 0 0 chr1 75709205 75709269 -206484395 + (TA)n Simple_repeat Simple_repeat 1 64 0 226 145 48 32 chr1 75709302 75709364 -206484300 - L1MCa LINE L1 -4358 2068 2006 361 244 11 17 chr1 75709369 75709549 -206484115 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 233 245 0 64 chr1 75709557 75709651 -206484013 - L1MC4 LINE L1 -1340 6702 6615 231 243 54 14 chr1 75709619 75709693 -206483971 + L1MC4 LINE L1 6614 6690 -1352 * 230 204 52 26 chr1 75709750 75709866 -206483798 + L1MC4 LINE L1 1995 6983 -1339 * 273 175 22 13 chr1 75709840 75709914 -206483750 + L1PA12 LINE L1 6356 6448 0 * 391 209 45 27 chr1 75709910 75710020 -206483644 + L1M4 LINE L1 4735 4846 -1300 312 200 0 0 chr1 75710022 75710092 -206483572 + (TA)n Simple_repeat Simple_repeat 1 70 0 4618 114 23 126 chr1 75710104 75711059 -206482605 + Tigger4(Zombi) DNA MER2_type 1874 2730 -1 1926 218 51 43 chr1 75711084 75711467 -206482197 - L1M4 LINE L1 -913 5233 4854 441 0 0 0 chr1 75711467 75711516 -206482148 + (TG)n Simple_repeat Simple_repeat 2 50 0 1926 218 51 43 chr1 75711516 75711614 -206482050 - L1M4 LINE L1 -1292 4854 4745 3054 118 14 0 chr1 75711614 75712047 -206481617 - L1PA13 LINE L1 -4 6159 5721 1926 218 51 43 chr1 75712047 75712097 -206481567 - L1M4 LINE L1 -1401 4745 4697 697 153 0 0 chr1 75712099 75712197 -206481467 - AluJb SINE Alu -16 296 199 436 211 0 0 chr1 75712197 75712287 -206481377 - L1M4 LINE L1 -1439 4707 4618 653 266 78 41 chr1 75712293 75712537 -206481127 - L1MEc LINE L1 -6104 292 40 548 281 12 0 chr1 75712548 75712719 -206480945 + L1MC5 LINE L1 7689 7861 -100 582 157 0 0 chr1 75712731 75712833 -206480831 + GA-rich Low_complexity Low_complexity 3 104 0 323 267 0 0 chr1 75712885 75712971 -206480693 + MIR SINE MIR 147 232 -30 833 180 6 0 chr1 75713297 75713464 -206480200 + CT-rich Low_complexity Low_complexity 5 172 0 231 283 0 0 chr1 75714238 75714291 -206479373 + (CA)n Simple_repeat Simple_repeat 1 53 0 228 320 0 13 chr1 75714832 75714907 -206478757 - L2 LINE L2 -1 3312 3239 373 236 76 92 chr1 75715574 75715760 -206477904 + L1MEd LINE L1 633 816 -5303 5728 133 22 19 chr1 75715760 75716660 -206477004 + MER4D LTR ERV1 1 903 0 373 236 76 92 chr1 75716660 75716723 -206476941 + L1MEd LINE L1 816 878 -5241 865 118 24 8 chr1 75716739 75716866 -206476798 + AluJb SINE Alu 1 129 -183 333 296 50 46 chr1 75716874 75717154 -206476510 + L1MEd LINE L1 861 1141 -4978 878 226 146 73 chr1 75717575 75718096 -206475568 - MER34C LTR ERV1 -4 581 23 * 1801 183 101 57 chr1 75718084 75718521 -206475143 - MLT1C LTR MaLR -6 461 6 497 293 30 8 chr1 75718535 75718668 -206474996 + MIR SINE MIR 51 186 -76 256 322 192 0 chr1 75719632 75719809 -206473855 + MIR SINE MIR 20 230 -32 831 154 0 0 chr1 75720196 75720319 -206473345 - FLAM_C SINE Alu -20 123 1 298 253 165 11 chr1 75720884 75720975 -206472689 - L2 LINE L2 -27 3286 3182 204 328 15 0 chr1 75720993 75721060 -206472604 - L2 LINE L2 -254 3059 2992 438 257 207 7 chr1 75721069 75721209 -206472455 + MIR SINE MIR 28 195 -67 2027 241 55 33 chr1 75721212 75721933 -206471731 + HsTC2a DNA Tc2 3 739 -5 181 261 22 0 chr1 75721938 75721984 -206471680 + MIR SINE MIR 202 248 -14 244 196 0 0 chr1 75722122 75722168 -206471496 + L2 LINE L2 3227 3272 0 180 0 0 0 chr1 75722538 75722558 -206471106 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 213 39 0 0 chr1 75722557 75722583 -206471081 + (CA)n Simple_repeat Simple_repeat 1 26 0 426 20 0 0 chr1 75723981 75724032 -206469632 + (TTTTG)n Simple_repeat Simple_repeat 5 55 0 2179 69 18 0 chr1 75724032 75724306 -206469358 - AluY SINE Alu -32 279 1 181 256 0 0 chr1 75724575 75724618 -206469046 + L2 LINE L2 1660 1702 -1612 466 233 11 6 chr1 75724688 75724705 -206468959 - L1MD3 LINE L1 -165 7799 7784 3162 141 10 58 chr1 75724705 75725323 -206468341 - L1PB4 LINE L1 0 6156 5569 466 233 11 6 chr1 75725323 75725431 -206468233 - L1MD3 LINE L1 -180 7784 7521 423 244 16 24 chr1 75725590 75725713 -206467951 - L1ME1 LINE L1 -19 6147 6026 3635 262 77 20 chr1 75725785 75727189 -206466475 - L1MEc LINE L1 -2767 4174 2852 2218 129 0 0 chr1 75727189 75727492 -206466172 + AluSx SINE Alu 1 303 -9 3635 262 77 20 chr1 75727492 75729077 -206464587 - L1MEc LINE L1 -4089 2852 865 2654 84 3 13 chr1 75729250 75729629 -206464035 - L1PA13 LINE L1 -1 6162 5788 1740 117 84 63 chr1 75729629 75729996 -206463668 + THE1C LTR MaLR 1 375 0 5031 141 5 72 chr1 75729998 75730962 -206462702 + THE1C-int LTR MaLR 3 902 -678 2473 93 3 17 chr1 75730961 75731286 -206462378 - L1PA13 LINE L1 -376 5792 5471 * 1788 145 184 11 chr1 75731286 75731651 -206462013 - MSTA LTR MaLR 0 428 1 2473 93 3 17 chr1 75731651 75731680 -206461984 - L1PA13 LINE L1 -697 5471 5443 937 175 0 0 chr1 75731686 75731863 -206461801 - L1PA13 LINE L1 -795 5351 5175 496 212 0 40 chr1 75731865 75731964 -206461700 + L2 LINE L2 3219 3313 0 187 299 15 30 chr1 75732188 75732255 -206461409 - L2 LINE L2 -2 3270 3205 451 277 101 66 chr1 75733159 75733576 -206460088 + MLT1L LTR MaLR 157 613 -2 2375 45 0 0 chr1 75735138 75735428 -206458236 + L1PA4 LINE L1 5863 6152 -3 24 0 0 0 chr1 75735428 75735452 -206458212 + AT_rich Low_complexity Low_complexity 1 24 0 348 382 15 0 chr1 75735479 75735610 -206458054 - MIR3 SINE MIR -29 179 47 232 329 58 83 chr1 75735931 75736051 -206457613 - MIR SINE MIR -21 241 128 2129 128 0 3 chr1 75736051 75736349 -206457315 + AluSx SINE Alu 1 297 -15 232 329 58 83 chr1 75736349 75736468 -206457196 - MIR SINE MIR -134 128 8 273 277 144 98 chr1 75736482 75737030 -206456634 - L3 LINE CR1 -56 1521 949 1426 153 65 14 chr1 75738052 75738198 -206455466 + L1MA9 LINE L1 6004 6141 -171 303 71 0 0 chr1 75738198 75738240 -206455424 + (CA)n Simple_repeat Simple_repeat 1 42 0 1426 153 65 14 chr1 75738240 75738387 -206455277 + L1MA9 LINE L1 6141 6312 0 6003 102 9 0 chr1 75739077 75740460 -206453204 - L1PA14 LINE L1 -3 6158 4762 1083 177 6 0 chr1 75740460 75740641 -206453023 - L1PA14 LINE L1 -2032 4114 3933 1243 32 7 0 chr1 75740643 75740797 -206452867 - AluY SINE Alu 0 311 157 2328 166 2 0 chr1 75740803 75741201 -206452463 - L1PA14 LINE L1 -2208 3938 3540 621 272 51 47 chr1 75741575 75741851 -206451813 - L2 LINE L2 -48 3265 2989 2162 127 3 29 chr1 75741885 75742231 -206451433 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr1 75742521 75742544 -206451120 + AT_rich Low_complexity Low_complexity 1 23 0 420 338 37 0 chr1 75742955 75743091 -206450573 + MIR SINE MIR 1 141 -121 421 258 106 131 chr1 75744020 75744540 -206449124 - LTR50 LTR ERVL -16 673 1 26 0 0 0 chr1 75744753 75744779 -206448885 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 75745322 75745345 -206448319 + AT_rich Low_complexity Low_complexity 1 23 0 1968 118 34 20 chr1 75745429 75745726 -206447938 + AluSq SINE Alu 1 301 -12 222 293 85 60 chr1 75746208 75746477 -206447187 + L2 LINE L2 2737 3060 -212 4346 144 14 0 chr1 75746632 75747332 -206446332 + L1PA15 LINE L1 5452 6161 -4 382 301 55 68 chr1 75747456 75747675 -206445989 + MIR SINE MIR 1 216 -46 458 288 21 58 chr1 75748475 75748666 -206444998 + MLT1L LTR MaLR 111 294 -321 341 261 46 31 chr1 75748801 75748931 -206444733 + MLT1L LTR MaLR 482 613 -2 42503 36 22 1 chr1 75749100 75755129 -206438535 + L1PA3 LINE L1 1 6155 0 334 326 83 22 chr1 75755541 75755949 -206437715 + L1ME4a LINE L1 5492 5924 -197 29 0 0 0 chr1 75756458 75756487 -206437177 + AT_rich Low_complexity Low_complexity 1 29 0 200 273 0 0 chr1 75757098 75757142 -206436522 + (TG)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr1 75757225 75757248 -206436416 + AT_rich Low_complexity Low_complexity 1 23 0 295 324 103 0 chr1 75757652 75757788 -206435876 + MIR SINE MIR 57 206 -56 188 318 0 0 chr1 75757864 75757908 -206435756 + MIR SINE MIR 87 130 -78 330 203 23 70 chr1 75759390 75759518 -206434146 - L1ME4a LINE L1 -58 6063 5942 237 200 0 22 chr1 75759850 75759895 -206433769 + Tigger5 DNA MER2_type 1 44 -2279 * 761 206 35 0 chr1 75759885 75760026 -206433638 + Tigger5 DNA MER2_type 2178 2323 0 187 231 0 0 chr1 75760026 75760065 -206433599 - L3 LINE CR1 -147 1430 1392 842 254 127 7 chr1 75760157 75760448 -206433216 - MLT1J2 LTR MaLR -124 326 1 382 326 99 27 chr1 75760448 75760669 -206432995 - L3 LINE CR1 -181 1396 1160 230 236 56 14 chr1 75762200 75762272 -206431392 - MLT1J2 LTR MaLR -22 428 354 1630 160 36 28 chr1 75762310 75762672 -206430992 + MLT1A1 LTR MaLR 1 365 0 504 256 70 20 chr1 75762749 75762940 -206430724 - MLT1J1 LTR MaLR -211 198 1 494 256 141 52 chr1 75763494 75763767 -206429897 - MLT1L LTR MaLR -3 612 229 943 200 68 5 chr1 75763811 75764016 -206429648 + MER20 DNA MER1_type 2 219 0 195 279 0 0 chr1 75764056 75764099 -206429565 + L2 LINE L2 3192 3234 -38 909 256 91 21 chr1 75765815 75766100 -206427564 + Charlie2 DNA MER1_type 18 322 -2460 1379 222 59 35 chr1 75766128 75766583 -206427081 + Charlie2 DNA MER1_type 1859 2324 -538 23 0 0 0 chr1 75766766 75766789 -206426875 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 75767253 75767285 -206426379 + AT_rich Low_complexity Low_complexity 1 32 0 898 281 146 27 chr1 75767314 75767514 -206426150 + L1ME3A LINE L1 4412 4587 -1575 1582 184 42 72 chr1 75767514 75767916 -206425748 + MLT1B LTR MaLR 1 390 0 898 281 146 27 chr1 75767916 75768826 -206424838 + L1ME3A LINE L1 4587 5668 -494 189 0 0 0 chr1 75768826 75768847 -206424817 + (TA)n Simple_repeat Simple_repeat 2 22 0 898 281 146 27 chr1 75768847 75768956 -206424708 + L1ME3A LINE L1 5668 5763 -399 312 316 0 0 chr1 75768974 75769072 -206424592 + L1ME3A LINE L1 5809 5906 -264 364 249 120 17 chr1 75770573 75770814 -206422850 + L1MEd LINE L1 736 1001 -5118 22 35 0 0 chr1 75770847 75770876 -206422788 + AT_rich Low_complexity Low_complexity 1 29 0 593 199 92 51 chr1 75770881 75771197 -206422467 + L1MEd LINE L1 2853 3181 -2948 421 297 63 21 chr1 75771187 75771426 -206422238 + L1MEd LINE L1 3734 3982 -2147 * 525 290 100 5 chr1 75771844 75772044 -206421620 + MIR SINE MIR 31 249 -13 750 260 12 6 chr1 75772301 75772470 -206421194 - MER45A DNA AcHobo 0 178 9 422 327 55 18 chr1 75773037 75773202 -206420462 + MIR3 SINE MIR 35 205 -3 186 43 0 0 chr1 75773457 75773480 -206420184 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2153 112 20 0 chr1 75773485 75773781 -206419883 - AluSx SINE Alu -10 302 1 808 206 0 0 chr1 75773817 75773953 -206419711 + FRAM SINE Alu 1 135 -41 1771 177 52 173 chr1 75773972 75774762 -206418902 + LTR8A LTR ERV1 34 727 0 377 347 48 14 chr1 75774952 75775099 -206418565 - Charlie8 DNA MER1_type -2130 287 136 951 268 57 55 chr1 75775328 75775731 -206417933 + L2 LINE L2 579 982 -2332 1997 167 37 15 chr1 75775732 75776186 -206417478 + LTR56 LTR ERV1 1 437 0 954 290 36 10 chr1 75776186 75776489 -206417175 + L2 LINE L2 980 1290 -2024 221 288 126 0 chr1 75777331 75777442 -206416222 + L2 LINE L2 3148 3272 0 8928 184 50 15 chr1 75777660 75778461 -206415203 + L1PB1 LINE L1 1 772 -6015 300 53 0 0 chr1 75778461 75778499 -206415165 + (TG)n Simple_repeat Simple_repeat 1 38 0 8928 184 50 15 chr1 75778499 75779542 -206414122 + L1PB1 LINE L1 772 1910 -4877 2103 143 42 22 chr1 75779546 75779903 -206413761 + THE1B LTR MaLR 1 364 0 2177 47 0 0 chr1 75779904 75780183 -206413481 + THE1B-int LTR MaLR 2 280 -1300 1251 89 0 178 chr1 75780183 75780369 -206413295 + MLT2A1 LTR ERVL 204 421 -23 261 0 0 0 chr1 75780369 75780398 -206413266 + (TA)n Simple_repeat Simple_repeat 2 30 0 1251 89 0 178 chr1 75780398 75780459 -206413205 + MLT2A1 LTR ERVL 421 395 -49 453 52 39 0 chr1 75780459 75780536 -206413128 + (TA)n Simple_repeat Simple_repeat 2 81 0 1251 89 0 178 chr1 75780536 75780580 -206413084 + MLT2A1 LTR ERVL 394 444 0 7006 167 45 7 chr1 75780581 75783121 -206410543 + L1PB1 LINE L1 4153 6798 -4 2325 97 0 6 chr1 75783146 75783457 -206410207 + AluSg1 SINE Alu 1 309 0 12004 178 5 5 chr1 75783465 75786643 -206407021 + L1PA13 LINE L1 2926 6152 -11 247 172 121 35 chr1 75787217 75787240 -206406424 + MIR SINE MIR 77 97 -165 225 65 0 0 chr1 75787240 75787271 -206406393 + (CA)n Simple_repeat Simple_repeat 2 32 0 247 172 121 35 chr1 75787271 75787305 -206406359 + MIR SINE MIR 97 139 -123 369 320 41 49 chr1 75787312 75787407 -206406257 - MIR SINE MIR -9 253 159 2483 61 0 0 chr1 75787407 75787703 -206405961 + AluY SINE Alu 1 296 -15 369 320 41 49 chr1 75787703 75787851 -206405813 - MIR SINE MIR -103 159 12 501 274 37 24 chr1 75788141 75788305 -206405359 - MIR3 SINE MIR -3 205 40 418 334 35 64 chr1 75788380 75788691 -206404973 - L2 LINE L2 -8 3305 3004 426 261 8 31 chr1 75789082 75789212 -206404452 + MLT2E LTR ERVL 30 156 -472 549 330 5 0 chr1 75789886 75790086 -206403578 + ERVL LTR ERVL 498 698 -5066 998 310 80 45 chr1 75790124 75790529 -206403135 + ERVL LTR ERVL 814 1248 -4516 730 207 74 69 chr1 75790529 75790746 -206402918 - MER20 DNA MER1_type 0 219 2 998 310 80 45 chr1 75790746 75790944 -206402720 + ERVL LTR ERVL 1248 1438 -4326 513 285 24 63 chr1 75791011 75791264 -206402400 + ERVL LTR ERVL 1581 1823 -3941 593 191 49 116 chr1 75791272 75791497 -206402167 + MLT1D LTR MaLR 1 210 -295 645 120 130 0 chr1 75791509 75791617 -206402047 + MLT1D LTR MaLR 384 505 0 384 246 144 8 chr1 75791842 75791960 -206401704 + ERVL LTR ERVL 2101 2234 -3530 2318 278 82 36 chr1 75792012 75792980 -206400684 + ERVL LTR ERVL 2342 3353 -2411 26 0 0 0 chr1 75794694 75794720 -206398944 + AT_rich Low_complexity Low_complexity 1 26 0 261 244 51 0 chr1 75795377 75795455 -206398209 - MLT1K LTR MaLR 0 588 507 1652 173 8 91 chr1 75795457 75795855 -206397809 + MLT1A1 LTR MaLR 1 365 0 454 254 182 11 chr1 75795976 75796157 -206397507 - MLT1J2 LTR MaLR -238 212 1 661 300 68 64 chr1 75796158 75796661 -206397003 - L1M4 LINE L1 -1979 4167 3663 248 200 17 0 chr1 75797425 75797485 -206396179 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 350 256 47 0 chr1 75797486 75797572 -206396092 - L1MC4 LINE L1 -1339 6703 6614 2013 131 10 16 chr1 75798826 75799140 -206394524 + AluSx SINE Alu 1 312 0 266 243 54 0 chr1 75800005 75800079 -206393585 + MIR SINE MIR 185 262 0 416 302 18 47 chr1 75800086 75800255 -206393409 - MIR SINE MIR -87 175 12 237 65 0 0 chr1 75800270 75800301 -206393363 + (CA)n Simple_repeat Simple_repeat 2 32 0 212 122 24 0 chr1 75801926 75801967 -206391697 + GA-rich Low_complexity Low_complexity 2 43 0 27 0 0 0 chr1 75805892 75805919 -206387745 + AT_rich Low_complexity Low_complexity 1 27 0 507 289 223 29 chr1 75807694 75808201 -206385463 + L2 LINE L2 2718 3313 0 269 218 36 55 chr1 75808567 75808677 -206384987 + CT-rich Low_complexity Low_complexity 3 110 0 477 309 50 22 chr1 75808923 75809104 -206384560 + MIR3 SINE MIR 20 205 -3 379 288 91 30 chr1 75809358 75809490 -206384174 - L2 LINE L2 -1 3312 3173 250 376 15 23 chr1 75809990 75810123 -206383541 - L2 LINE L2 -1 3312 3181 2628 133 72 156 chr1 75810183 75810948 -206382716 - MER44D DNA MER2_type 0 705 5 374 271 49 16 chr1 75810961 75811083 -206382581 - MIR SINE MIR -62 146 21 230 224 138 0 chr1 75811570 75811628 -206382036 - MIR3 SINE MIR -53 155 90 434 274 140 6 chr1 75811859 75812038 -206381626 + MIR SINE MIR 2 204 -58 595 103 10 0 chr1 75812082 75812179 -206381485 - Tigger7 DNA MER2_type -91 2400 2303 399 266 102 0 chr1 75812383 75812511 -206381153 - MER117 DNA MER1_type -37 160 20 1825 153 0 10 chr1 75812580 75812874 -206380790 + AluSx SINE Alu 1 291 -21 634 185 5 113 chr1 75813763 75813805 -206379859 - MLT2C1 LTR ERVL 0 397 352 369 0 0 0 chr1 75813805 75813846 -206379818 + (TG)n Simple_repeat Simple_repeat 2 42 0 634 185 5 113 chr1 75813846 75813998 -206379666 - MLT2C1 LTR ERVL -45 352 224 397 241 0 0 chr1 75814231 75814318 -206379346 + MIR SINE MIR 165 251 -11 181 340 20 0 chr1 75814856 75814906 -206378758 + MIR SINE MIR 50 100 -108 625 302 109 20 chr1 75815809 75816359 -206377305 - L2 LINE L2 -37 3276 2680 27 0 0 0 chr1 75816393 75816420 -206377244 + AT_rich Low_complexity Low_complexity 1 27 0 333 331 0 41 chr1 75817188 75817309 -206376355 + MIR SINE MIR 5 120 -142 659 119 0 17 chr1 75817310 75817428 -206376236 + (TTCC)n Simple_repeat Simple_repeat 3 118 0 319 307 102 15 chr1 75817455 75817592 -206376072 - L2 LINE L2 -10 3303 3155 22 0 0 0 chr1 75818395 75818417 -206375247 + AT_rich Low_complexity Low_complexity 1 22 0 567 263 17 34 chr1 75818802 75818977 -206374687 - MIR SINE MIR 0 262 91 279 163 0 0 chr1 75818996 75819039 -206374625 - 5S rRNA rRNA -78 43 1 273 222 25 62 chr1 75819220 75819301 -206374363 - MIR SINE MIR -111 151 74 21 0 0 0 chr1 75819563 75819584 -206374080 + AT_rich Low_complexity Low_complexity 1 21 0 377 287 148 10 chr1 75820105 75820307 -206373357 - MIR SINE MIR -25 237 8 625 294 64 38 chr1 75820710 75820945 -206372719 + MIR SINE MIR 2 242 -20 2167 141 3 0 chr1 75821570 75821867 -206371797 + AluSx SINE Alu 1 298 -14 372 200 24 12 chr1 75821985 75822070 -206371594 + MIR3 SINE MIR 108 193 -15 2183 130 0 14 chr1 75822618 75822979 -206370685 + MER46B DNA MER2_type 6 236 0 195 319 94 51 chr1 75823144 75823379 -206370285 + L2 LINE L2 2424 2668 -646 353 229 10 62 chr1 75823638 75823734 -206369930 + L2 LINE L2 3182 3272 0 835 226 48 22 chr1 75823958 75824188 -206369476 - MIR SINE MIR -21 241 6 206 298 18 0 chr1 75826117 75826174 -206367490 + L2 LINE L2 3124 3181 -91 927 207 41 0 chr1 75826403 75826572 -206367092 + MER45A DNA AcHobo 3 178 0 440 237 26 0 chr1 75826730 75826844 -206366820 - MIR SINE MIR 0 262 146 369 220 77 0 chr1 75827359 75827450 -206366214 - MER5A DNA MER1_type -83 106 9 369 314 21 37 chr1 75827620 75827811 -206365853 - MLT1L LTR MaLR -8 607 420 272 284 140 62 chr1 75827840 75828083 -206365581 - MLT1L LTR MaLR -259 356 95 846 259 91 9 chr1 75828902 75829134 -206364530 + MIR SINE MIR 2 252 -10 739 278 61 20 chr1 75829253 75829498 -206364166 - MIR SINE MIR -1 261 7 312 324 39 0 chr1 75830291 75830393 -206363271 - L2 LINE L2 -1 3271 3166 316 291 62 39 chr1 75831524 75831703 -206361961 - MIR3 SINE MIR -18 190 8 268 262 12 24 chr1 75832401 75832485 -206361179 - MIR SINE MIR -103 105 23 428 268 21 45 chr1 75833110 75833299 -206360365 - MIR SINE MIR -62 146 1 232 361 111 0 chr1 75833920 75834028 -206359636 - L2 LINE L2 -3 3269 3150 3303 85 0 0 chr1 75834870 75835315 -206358349 - L1PA8 LINE L1 0 6172 5728 2004 60 18 0 chr1 75835315 75835674 -206357990 - L1PA8 LINE L1 -631 5523 5160 2792 81 0 3 chr1 75835774 75836144 -206357520 - L1PA8 LINE L1 -76 6096 5728 * 9479 96 13 0 chr1 75836142 75837667 -206355997 - L1PA8 LINE L1 -629 5525 3985 1511 65 5 0 chr1 75837665 75837864 -206355800 + L1PA8 LINE L1 3783 3982 -2164 * 3499 233 31 26 chr1 75838182 75839190 -206354474 - L1M4 LINE L1 -1947 4199 3187 571 241 0 9 chr1 75839621 75839733 -206353931 - L2 LINE L2 -4 3309 3199 184 331 90 15 chr1 75839871 75840004 -206353660 + L2 LINE L2 2578 2720 -594 363 269 24 61 chr1 75840031 75840243 -206353421 + L1MC5 LINE L1 7238 7441 -520 233 380 167 15 chr1 75840793 75841122 -206352542 + L2 LINE L2 2891 3269 -3 1916 170 51 22 chr1 75841814 75842225 -206351439 + L1MB7 LINE L1 5750 6172 -12 4828 102 11 3 chr1 75842229 75842925 -206350739 + L1PA13 LINE L1 5454 6155 -8 861 291 121 18 chr1 75842989 75843387 -206350277 - MLT1J2 LTR MaLR -8 442 4 25 0 0 0 chr1 75844511 75844536 -206349128 + AT_rich Low_complexity Low_complexity 1 25 0 213 362 35 17 chr1 75844573 75844689 -206348975 + MIR3 SINE MIR 78 195 -13 553 250 92 16 chr1 75845344 75845528 -206348136 + MIR SINE MIR 1 198 -64 205 220 0 40 chr1 75845692 75845742 -206347922 + CT-rich Low_complexity Low_complexity 6 53 0 405 0 0 0 chr1 75846761 75846806 -206346858 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr1 75847066 75847088 -206346576 + AT_rich Low_complexity Low_complexity 1 22 0 275 275 93 63 chr1 75847165 75847318 -206346346 - MER5A DNA MER1_type -1 177 21 205 330 59 51 chr1 75847508 75847626 -206346038 - MIR SINE MIR -92 170 52 1876 129 4 4 chr1 75847678 75847949 -206345715 - AluSp SINE Alu -16 297 27 1464 320 96 11 chr1 75848798 75849635 -206344029 + L2 LINE L2 2368 3294 -19 239 157 39 59 chr1 75849727 75849778 -206343886 + L2 LINE L2 3262 3311 -2 709 282 87 4 chr1 75850217 75850458 -206343206 + MIR SINE MIR 2 262 0 24 67 0 0 chr1 75850462 75850507 -206343157 + AT_rich Low_complexity Low_complexity 1 45 0 207 383 108 12 chr1 75852289 75852456 -206341208 + MER5A DNA MER1_type 7 189 0 344 291 86 0 chr1 75852765 75852882 -206340782 + L2 LINE L2 3180 3306 -7 440 344 37 0 chr1 75853364 75853553 -206340111 - L3 LINE CR1 -5 1572 1377 207 0 0 0 chr1 75854574 75854597 -206339067 + (TG)n Simple_repeat Simple_repeat 2 24 0 929 166 0 0 chr1 75854626 75854649 -206339015 - AluSq/x SINE Alu -167 145 123 207 0 0 0 chr1 75854649 75854672 -206338992 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 929 166 0 0 chr1 75854672 75854793 -206338871 - AluSq/x SINE Alu -188 124 1 4742 205 77 30 chr1 75854909 75856498 -206337166 - L1MDa LINE L1 -3548 2992 1324 211 231 19 0 chr1 75856815 75856867 -206336797 + GA-rich Low_complexity Low_complexity 3 55 0 195 42 0 0 chr1 75857639 75857663 -206336001 + (T)n Simple_repeat Simple_repeat 1 24 0 462 36 0 0 chr1 75858164 75858220 -206335444 + (TA)n Simple_repeat Simple_repeat 1 56 0 632 165 83 0 chr1 75859436 75859569 -206334095 - AluJo SINE Alu -1 311 168 1098 111 29 0 chr1 75859569 75859740 -206333924 + L1MC1 LINE L1 5721 5896 -437 659 217 105 0 chr1 75859740 75859883 -206333781 - AluJo SINE Alu -153 159 2 2370 132 39 25 chr1 75860436 75860567 -206333097 - L1MC1 LINE L1 -1 6332 6204 5098 151 23 42 chr1 75860567 75861553 -206332111 - LTR5 LTR ERVK 0 969 2 2370 132 39 25 chr1 75861553 75861852 -206331812 - L1MC1 LINE L1 -129 6204 5896 251 154 0 19 chr1 75861856 75861908 -206331756 + CT-rich Low_complexity Low_complexity 2 52 0 832 181 0 0 chr1 75861910 75862043 -206331621 - FLAM_C SINE Alu 0 133 1 2737 121 2 0 chr1 75862043 75862440 -206331224 - L1MC1 LINE L1 -427 5906 5509 822 204 19 0 chr1 75862627 75862789 -206330875 + FRAM SINE Alu 3 167 -9 456 270 50 13 chr1 75863748 75863907 -206329757 + MIR SINE MIR 90 254 -8 443 282 20 7 chr1 75864256 75864405 -206329259 - MER117 DNA MER1_type -43 154 4 1812 222 42 16 chr1 75864668 75865119 -206328545 + L1MD2 LINE L1 5743 6205 -154 2693 175 36 24 chr1 75865129 75865693 -206327971 - LTR27 LTR ERV1 -140 496 5 595 86 248 26 chr1 75865695 75865812 -206327852 + L1MD2 LINE L1 6197 6339 -20 1394 143 45 45 chr1 75866057 75866323 -206327341 - L1PA12 LINE L1 -11 6157 5892 469 207 84 67 chr1 75866520 75866699 -206326965 - MER117 DNA MER1_type 0 197 16 1383 212 157 57 chr1 75867377 75867468 -206326196 + MER119 DNA MER1_type 66 147 -436 2392 144 47 0 chr1 75867468 75867877 -206325787 - MSTA LTR MaLR 0 428 1 1383 212 157 57 chr1 75867877 75868256 -206325408 + MER119 DNA MER1_type 147 583 0 469 286 29 7 chr1 75868272 75868412 -206325252 - MIR SINE MIR -51 211 69 288 306 10 31 chr1 75868405 75868503 -206325161 - MIR SINE MIR -78 130 35 * 264 338 83 78 chr1 75869317 75869690 -206323974 - L2 LINE L2 -47 3225 2851 2104 88 0 13 chr1 75870081 75870410 -206323254 + AluY SINE Alu 1 311 0 180 0 0 0 chr1 75870532 75870552 -206323112 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 205 70 117 chr1 75870610 75870883 -206322781 + MER112 DNA MER1_type 1 260 0 229 374 0 0 chr1 75871282 75871365 -206322299 + MER5A DNA MER1_type 7 89 -100 * 281 281 95 0 chr1 75871309 75871420 -206322244 - MER5A DNA MER1_type -22 167 23 211 317 14 69 chr1 75871416 75871526 -206322138 + MIR SINE MIR 84 187 -75 * 887 44 18 0 chr1 75871526 75871665 -206321999 + L1PA5 LINE L1 6027 6167 0 211 317 14 69 chr1 75871665 75871698 -206321966 + MIR SINE MIR 187 220 -42 186 340 0 0 chr1 75873061 75873111 -206320553 - MIR SINE MIR -57 205 156 361 281 35 35 chr1 75873508 75873658 -206320006 + MIR SINE MIR 45 193 -69 417 359 26 43 chr1 75875102 75875336 -206318328 + MIR SINE MIR 12 241 -21 335 269 104 50 chr1 75877063 75877245 -206316419 + MIR SINE MIR 50 241 -21 217 345 17 43 chr1 75879332 75879448 -206314216 + MIR SINE MIR 23 135 -73 2479 91 0 3 chr1 75879776 75880117 -206313547 + L1PB1 LINE L1 5811 6150 -1 363 276 62 82 chr1 75880165 75880329 -206313335 - MIR SINE MIR -48 214 48 396 313 97 5 chr1 75880653 75880848 -206312816 - L2 LINE L2 -755 2559 2347 2386 154 43 5 chr1 75880943 75881359 -206312305 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr1 75881534 75881570 -206312094 + AT_rich Low_complexity Low_complexity 1 36 0 238 305 76 61 chr1 75882262 75882297 -206311367 + L2 LINE L2 2741 2774 -540 1929 173 0 0 chr1 75882297 75882604 -206311060 - AluSx SINE Alu -5 307 1 238 305 76 61 chr1 75882604 75882699 -206310965 + L2 LINE L2 2774 2873 -441 238 260 60 0 chr1 75882825 75882875 -206310789 + L2 LINE L2 3239 3291 -22 279 288 135 60 chr1 75883063 75883330 -206310334 + L3b LINE CR1 1106 1392 -191 2324 106 0 3 chr1 75883783 75884094 -206309570 - AluSp SINE Alu -3 310 1 216 0 0 0 chr1 75884096 75884120 -206309544 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1847 150 7 0 chr1 75884120 75884400 -206309264 - AluSq SINE Alu -25 288 7 256 241 265 0 chr1 75885390 75885473 -206308191 - MIR SINE MIR -69 193 89 247 213 43 0 chr1 75886104 75886151 -206307513 - L2 LINE L2 -15 3257 3209 231 303 26 0 chr1 75886848 75886924 -206306740 + MIR SINE MIR 20 97 -165 534 312 78 5 chr1 75887454 75887659 -206306005 + MIR SINE MIR 29 248 -14 23 33 0 0 chr1 75888808 75888838 -206304826 + AT_rich Low_complexity Low_complexity 1 30 0 1596 150 72 70 chr1 75889325 75889699 -206303965 - THE1C LTR MaLR 0 375 1 294 284 164 0 chr1 75889736 75889870 -206303794 + MER112 DNA MER1_type 93 248 -12 2158 169 9 21 chr1 75890400 75890819 -206302845 - L1MB5 LINE L1 -13 6161 5748 262 331 113 6 chr1 75890985 75891145 -206302519 - L2 LINE L2 -1037 2277 2101 2084 133 3 7 chr1 75892220 75892514 -206301150 - AluSx SINE Alu -19 293 1 261 83 0 0 chr1 75895087 75895123 -206298541 + (T)n Simple_repeat Simple_repeat 1 36 0 181 385 0 0 chr1 75896038 75896090 -206297574 + L2 LINE L2 3210 3261 -11 206 357 35 50 chr1 75896256 75896514 -206297150 - L2 LINE L2 -338 2976 2723 4146 36 2 2 chr1 75896716 75897215 -206296449 - L1PA5 LINE L1 -5 6149 5651 416 198 73 21 chr1 75897266 75897362 -206296302 + MIR SINE MIR 40 140 -68 192 357 89 6 chr1 75898318 75898486 -206295178 - MIR SINE MIR -67 195 14 23 33 0 0 chr1 75898663 75898693 -206294971 + AT_rich Low_complexity Low_complexity 1 30 0 1003 262 33 4 chr1 75898809 75899053 -206294611 - MIR SINE MIR -10 252 2 1945 148 4 0 chr1 75899488 75899766 -206293898 + AluSq SINE Alu 1 279 -34 1136 107 11 0 chr1 75899766 75899944 -206293720 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 276 30 0 0 chr1 75900078 75900111 -206293553 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 642 26 0 0 chr1 75900651 75900727 -206292937 + (TC)n Simple_repeat Simple_repeat 2 77 0 243 209 264 11 chr1 75901176 75901267 -206292397 - MIR SINE MIR -136 126 13 903 163 6 18 chr1 75901492 75901658 -206292006 + FAM SINE Alu 1 164 -11 203 339 15 0 chr1 75903444 75903509 -206290155 + L2 LINE L2 3206 3271 -1 743 160 179 0 chr1 75905512 75905668 -206287996 - MER3 DNA MER1_type -25 184 1 417 20 0 0 chr1 75906439 75906489 -206287175 + (TG)n Simple_repeat Simple_repeat 2 51 0 210 207 0 0 chr1 75906729 75906787 -206286877 + (TATATG)n Simple_repeat Simple_repeat 4 61 0 238 218 18 0 chr1 75906906 75906961 -206286703 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 929 87 7 0 chr1 75909099 75909237 -206284427 - MER30 DNA MER1_type -88 142 4 253 286 9 36 chr1 75909310 75909422 -206284242 + MIR SINE MIR 154 262 0 382 342 70 42 chr1 75909492 75909904 -206283760 - L2 LINE L2 -256 3057 2633 307 159 0 32 chr1 75909933 75909996 -206283668 + L1MA9 LINE L1 5887 5947 -365 864 108 17 0 chr1 75909999 75910119 -206283545 + AluSg/x SINE Alu 176 297 -15 589 222 83 11 chr1 75910119 75910394 -206283270 + L1MA9 LINE L1 5942 6274 -38 294 337 137 6 chr1 75910607 75910782 -206282882 + MIR SINE MIR 47 244 -18 257 339 130 57 chr1 75911224 75911646 -206282018 + L2 LINE L2 2813 3265 -7 22 0 0 0 chr1 75911946 75911968 -206281696 + AT_rich Low_complexity Low_complexity 1 22 0 2040 146 0 0 chr1 75914911 75915212 -206278452 - AluSx SINE Alu -11 301 1 854 278 80 37 chr1 75916107 75916596 -206277068 - MLT1J LTR MaLR 0 511 2 217 330 236 0 chr1 75916845 75916951 -206276713 - L3 LINE CR1 -141 1436 1306 899 270 56 16 chr1 75917081 75917400 -206276264 - LTR16A LTR ERVL -118 332 1 189 0 0 0 chr1 75917458 75917479 -206276185 + (TGAG)n Simple_repeat Simple_repeat 3 23 0 558 314 159 13 chr1 75917488 75917860 -206275804 - L3 LINE CR1 -935 642 217 388 324 41 7 chr1 75917880 75918025 -206275639 + MIR SINE MIR 34 183 -79 228 245 53 64 chr1 75918296 75918390 -206275274 - L3 LINE CR1 -674 903 811 334 237 44 44 chr1 75918432 75918546 -206275118 + MIR SINE MIR 65 178 -84 440 293 47 0 chr1 75918947 75919097 -206274567 + MIR SINE MIR 63 219 -43 226 321 18 18 chr1 75919274 75919383 -206274281 - MARNA DNA Mariner -399 187 79 224 191 0 21 chr1 75919444 75919491 -206274173 - L2 LINE L2 -6 3307 3262 632 268 30 83 chr1 75919954 75920219 -206273445 + MIR SINE MIR 12 262 0 768 306 10 0 chr1 75920326 75920532 -206273132 - MIR SINE MIR -52 210 3 338 244 144 25 chr1 75921180 75921340 -206272324 + MIR SINE MIR 73 251 -11 263 279 0 0 chr1 75923103 75923164 -206270500 + L2 LINE L2 3246 3306 -7 223 284 129 17 chr1 75924229 75924345 -206269319 + L2 LINE L2 2765 2893 -421 5295 122 114 52 chr1 75924583 75925699 -206267965 - Tigger3b DNA MER2_type -44 1187 3 341 219 90 84 chr1 75925702 75925857 -206267807 + L2 LINE L2 3158 3313 0 1807 168 0 27 chr1 75925960 75926252 -206267412 + AluJo SINE Alu 5 288 -24 189 323 96 45 chr1 75928000 75928356 -206265308 - L2 LINE L2 -354 2960 2587 1576 200 6 16 chr1 75928698 75929013 -206264651 + AluJo SINE Alu 1 600 0 602 90 18 18 chr1 75929013 75929301 -206264363 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 286 105 0 0 chr1 75929301 75929339 -206264325 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 329 259 152 60 chr1 75932072 75932339 -206261325 + Charlie8 DNA MER1_type 37 1414 -1003 291 67 0 22 chr1 75932966 75933011 -206260653 - MADE1 DNA Mariner -34 46 3 243 345 181 11 chr1 75933553 75933730 -206259934 + MIR3 SINE MIR 2 208 0 239 54 27 0 chr1 75934018 75934055 -206259609 + (TTG)n Simple_repeat Simple_repeat 2 39 0 8485 59 0 0 chr1 75934055 75935894 -206257770 - L1PA6 LINE L1 -12 6142 4301 240 111 0 0 chr1 75936870 75936906 -206256758 + (TG)n Simple_repeat Simple_repeat 2 37 0 2244 89 7 0 chr1 75937266 75937557 -206256107 - AluSg SINE Alu -17 293 1 22 0 0 0 chr1 75942523 75942545 -206251119 + AT_rich Low_complexity Low_complexity 1 22 0 1653 167 11 11 chr1 75942955 75943261 -206250403 + AluJo SINE Alu 1 306 0 345 286 17 17 chr1 75943614 75943733 -206249931 - MLT1J LTR MaLR -15 496 378 316 215 127 0 chr1 75943917 75943996 -206249668 - MLT1J LTR MaLR -422 89 1 1971 136 26 0 chr1 75944555 75944903 -206248761 - AluJb SINE Alu 0 356 1 475 283 69 6 chr1 75945158 75945331 -206248333 - MIR SINE MIR -56 206 23 201 338 44 0 chr1 75946476 75946544 -206247120 - L2 LINE L2 -32 3240 3170 246 436 54 0 chr1 75948335 75948484 -206245180 + L2 LINE L2 3108 3264 -8 29 0 0 0 chr1 75950168 75950197 -206243467 + AT_rich Low_complexity Low_complexity 1 29 0 198 143 0 0 chr1 75951918 75951953 -206241711 + (T)n Simple_repeat Simple_repeat 1 35 0 1988 114 22 41 chr1 75952802 75953118 -206240546 - AluSx SINE Alu -2 310 1 678 206 98 31 chr1 75953135 75953329 -206240335 - MIR SINE MIR -48 214 8 246 250 0 0 chr1 75954765 75954780 -206238884 + MER3 DNA MER1_type 35 49 -160 744 206 57 36 chr1 75954780 75954974 -206238690 - MER3 DNA MER1_type -2 207 10 604 276 103 5 chr1 75955127 75955312 -206238352 - MIR SINE MIR -47 215 13 411 263 117 7 chr1 75956737 75956874 -206236790 + MIR SINE MIR 79 230 -32 2347 84 0 7 chr1 75960980 75961276 -206232388 + AluSg SINE Alu 1 294 -16 443 268 30 30 chr1 75962062 75962230 -206231434 - MER104 DNA Tc2 -5 175 8 404 229 3 24 chr1 75962230 75962358 -206231306 + FLAM SINE Alu 46 116 -17 270 0 0 0 chr1 75962358 75962388 -206231276 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr1 75963920 75963941 -206229723 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 75966348 75966369 -206227295 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 75967405 75967442 -206226222 + AT_rich Low_complexity Low_complexity 1 37 0 2530 50 0 0 chr1 75967481 75967779 -206225885 - AluY SINE Alu -13 298 1 291 355 125 30 chr1 75968210 75968675 -206224989 + L2 LINE L2 313 821 -2493 784 244 70 12 chr1 75968753 75968995 -206224669 - L2 LINE L2 0 3313 3058 23 0 0 0 chr1 75969015 75969038 -206224626 + AT_rich Low_complexity Low_complexity 1 23 0 319 259 19 73 chr1 75969092 75969194 -206224470 - MIR SINE MIR -45 163 68 2283 104 0 0 chr1 75969194 75969491 -206224173 + AluSx SINE Alu 5 301 -11 319 259 19 73 chr1 75969491 75969528 -206224136 - MIR SINE MIR -140 68 31 1439 180 40 18 chr1 75969647 75969974 -206223690 - L1MA5 LINE L1 0 6300 5967 667 311 0 0 chr1 75971167 75971350 -206222314 - MIR SINE MIR -19 243 61 411 325 63 0 chr1 75971451 75971577 -206222087 + MIR SINE MIR 54 187 -75 225 154 0 0 chr1 75972606 75972645 -206221019 + (CA)n Simple_repeat Simple_repeat 2 40 0 327 137 20 78 chr1 75972674 75972827 -206220837 + (TA)n Simple_repeat Simple_repeat 2 145 0 219 69 0 0 chr1 75972976 75973005 -206220659 + (TG)n Simple_repeat Simple_repeat 2 30 0 517 296 169 0 chr1 75973009 75973198 -206220466 + MIR SINE MIR 24 244 -18 195 307 27 0 chr1 75974044 75974119 -206219545 - MIR SINE MIR -1 261 185 1913 84 0 8 chr1 75974892 75975154 -206218510 + L1PA8 LINE L1 5913 6172 0 570 187 43 37 chr1 75975206 75975393 -206218271 - MER69 DNA AcHobo -738 1788 1601 21 36 0 0 chr1 75975393 75975421 -206218243 + AT_rich Low_complexity Low_complexity 1 28 0 222 137 65 13 chr1 75975422 75975575 -206218089 + (TA)n Simple_repeat Simple_repeat 1 161 0 448 295 34 26 chr1 75976443 75976799 -206216865 - HsTC2 DNA Tc2 -1007 891 506 579 233 29 69 chr1 75976880 75977125 -206216539 - MER106A DNA MER1_type -1 235 1 407 295 164 24 chr1 75977187 75977394 -206216270 + MIR SINE MIR 6 241 -21 1516 63 4 13 chr1 75978108 75978347 -206215317 - L1PA7 LINE L1 0 6172 5939 643 270 60 37 chr1 75978489 75978704 -206214960 + MIR SINE MIR 34 253 -9 464 276 52 0 chr1 75978809 75978943 -206214721 + MIR SINE MIR 97 237 -25 28 0 0 0 chr1 75979087 75979115 -206214549 + AT_rich Low_complexity Low_complexity 1 28 0 429 320 88 11 chr1 75980372 75980553 -206213111 - MIR SINE MIR -62 200 6 382 291 61 34 chr1 75981144 75981292 -206212372 + MIR SINE MIR 80 231 -31 218 274 0 0 chr1 75981656 75981707 -206211957 + T-rich Low_complexity Low_complexity 5 55 0 527 316 18 81 chr1 75982158 75982430 -206211234 + MIR SINE MIR 8 262 0 280 278 0 82 chr1 75982446 75982543 -206211121 + MIR SINE MIR 36 124 -138 251 333 59 29 chr1 75982735 75982837 -206210827 + L2 LINE L2 3143 3247 -25 29 70 0 0 chr1 75982837 75982894 -206210770 + AT_rich Low_complexity Low_complexity 1 57 0 567 316 15 11 chr1 75983226 75983438 -206210226 - MIR SINE MIR -42 220 10 403 299 85 18 chr1 75983749 75983913 -206209751 - MIR3 SINE MIR -6 202 28 331 309 26 46 chr1 75984826 75984978 -206208686 - L3 LINE CR1 -649 928 780 488 280 270 15 chr1 75985040 75985240 -206208424 - MIR SINE MIR 0 262 12 601 380 18 0 chr1 75985296 75985525 -206208139 - L3 LINE CR1 -947 630 398 183 245 113 19 chr1 75985614 75985667 -206207997 + MIR SINE MIR 111 168 -94 200 352 46 9 chr1 75986086 75986194 -206207470 + L2 LINE L2 2968 3079 -193 310 337 117 25 chr1 75986756 75986952 -206206712 + MIR SINE MIR 21 234 -28 306 257 105 67 chr1 75987020 75987125 -206206539 + L2 LINE L2 3160 3268 -4 705 289 39 10 chr1 75987504 75987708 -206205956 + MIR SINE MIR 1 210 -52 236 222 62 25 chr1 75988780 75988861 -206204803 - MLT1K LTR MaLR -18 570 487 1725 176 7 0 chr1 75989547 75989836 -206203828 + AluJo SINE Alu 3 293 -19 2027 154 0 0 chr1 75990509 75990808 -206202856 - AluJb SINE Alu -13 299 1 977 195 122 126 chr1 75990956 75991606 -206202058 + L2 LINE L2 2628 3276 -37 320 291 23 0 chr1 75991622 75991708 -206201956 - L2 LINE L2 0 3272 3185 268 285 104 56 chr1 75992693 75992837 -206200827 + L2 LINE L2 3163 3313 0 22 35 0 0 chr1 75993529 75993558 -206200106 + AT_rich Low_complexity Low_complexity 1 29 0 859 183 125 0 chr1 75994680 75994888 -206198776 + L1ME1 LINE L1 35 268 -6128 315 280 57 72 chr1 75994897 75995090 -206198574 - LTR41 LTR ERVL -347 426 237 734 182 25 13 chr1 75995300 75995459 -206198205 - LTR41 LTR ERVL -602 171 11 1541 209 9 58 chr1 75995459 75995924 -206197740 + L1ME1 LINE L1 4685 5126 -1089 929 183 0 0 chr1 75995934 75996087 -206197577 + FRAM SINE Alu 11 163 -13 2662 213 111 39 chr1 75996095 75997155 -206196509 + L1ME1 LINE L1 5127 6403 0 3913 137 0 3 chr1 75997590 75998218 -206195446 + L1PA13 LINE L1 5530 6155 -8 2292 109 0 0 chr1 75998898 75999202 -206194462 - AluSx SINE Alu -8 304 1 718 309 95 16 chr1 75999677 76000168 -206193496 + L2 LINE L2 2499 3035 -237 479 138 0 12 chr1 76000218 76000298 -206193366 + MADE1 DNA Mariner 2 80 0 25 65 0 0 chr1 76000754 76000800 -206192864 + AT_rich Low_complexity Low_complexity 1 46 0 290 262 36 12 chr1 76001485 76001569 -206192095 + MIR SINE MIR 49 134 -128 186 241 0 56 chr1 76002157 76002211 -206191453 + MIR SINE MIR 95 145 -63 2229 112 0 3 chr1 76003738 76004042 -206189622 - AluSx SINE Alu -4 308 6 1755 139 45 107 chr1 76004075 76004423 -206189241 - L1MA8 LINE L1 -3 6288 5920 262 0 0 50 chr1 76004423 76004463 -206189201 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1724 146 4 0 chr1 76004465 76004719 -206188945 - AluSx SINE Alu -24 288 34 1755 139 45 107 chr1 76004719 76004814 -206188850 - L1MA8 LINE L1 -372 5919 5870 22 0 0 0 chr1 76004826 76004848 -206188816 + AT_rich Low_complexity Low_complexity 1 22 0 386 212 34 34 chr1 76004988 76005167 -206188497 + (TA)n Simple_repeat Simple_repeat 1 179 0 22 0 0 0 chr1 76005179 76005201 -206188463 + AT_rich Low_complexity Low_complexity 1 22 0 202 102 74 46 chr1 76005212 76005320 -206188344 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 328 206 0 76 chr1 76005365 76005592 -206188072 + (TTATA)n Simple_repeat Simple_repeat 1 209 0 245 295 51 13 chr1 76005641 76005719 -206187945 - MER5B DNA MER1_type -80 98 18 27 0 0 0 chr1 76006175 76006202 -206187462 + AT_rich Low_complexity Low_complexity 1 27 0 918 118 0 0 chr1 76006308 76006427 -206187237 + FLAM_C SINE Alu 1 119 -24 21 0 0 0 chr1 76006427 76006448 -206187216 + AT_rich Low_complexity Low_complexity 1 21 0 339 291 61 61 chr1 76006462 76006627 -206187037 + MIR SINE MIR 48 212 -50 693 266 4 86 chr1 76007709 76007987 -206185677 - MIR SINE MIR -2 260 6 265 241 98 71 chr1 76008921 76009033 -206184631 - LTR33A LTR ERVL -349 174 60 23 0 0 0 chr1 76009290 76009313 -206184351 + AT_rich Low_complexity Low_complexity 1 23 0 2325 87 3 3 chr1 76010650 76010960 -206182704 - AluY SINE Alu -1 310 1 469 230 14 58 chr1 76011212 76011351 -206182313 - MER94 DNA DNA 0 134 2 2759 29 0 0 chr1 76011351 76011662 -206182002 - AluY SINE Alu 0 311 1 26 0 0 0 chr1 76012379 76012405 -206181259 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr1 76013429 76013458 -206180206 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr1 76013512 76013544 -206180120 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr1 76014072 76014112 -206179552 + AT_rich Low_complexity Low_complexity 1 40 0 24 85 0 0 chr1 76014766 76014825 -206178839 + AT_rich Low_complexity Low_complexity 1 59 0 330 161 123 25 chr1 76015076 76015157 -206178507 + MIR SINE MIR 65 153 -55 470 288 186 9 chr1 76015437 76015652 -206178012 - MIR SINE MIR 0 262 10 236 180 0 40 chr1 76016145 76016195 -206177469 + MIR3 SINE MIR 155 202 -6 27 29 0 0 chr1 76018029 76018063 -206175601 + AT_rich Low_complexity Low_complexity 1 34 0 209 217 0 0 chr1 76018335 76018381 -206175283 + T-rich Low_complexity Low_complexity 1 46 0 222 37 0 0 chr1 76018888 76018915 -206174749 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 357 43 0 0 chr1 76018914 76018961 -206174703 + (TG)n Simple_repeat Simple_repeat 2 48 0 272 355 82 22 chr1 76020145 76020328 -206173336 + MIR SINE MIR 55 248 -14 248 343 89 14 chr1 76020792 76020938 -206172726 + MIR SINE MIR 87 243 -19 436 286 0 0 chr1 76021924 76022057 -206171607 + (CA)n Simple_repeat Simple_repeat 1 133 0 32 0 0 0 chr1 76022486 76022518 -206171146 + AT_rich Low_complexity Low_complexity 1 32 0 1793 175 0 7 chr1 76022559 76022856 -206170808 + AluJo SINE Alu 1 295 -17 1826 148 28 0 chr1 76022858 76023142 -206170522 + AluJo SINE Alu 1 292 -20 394 236 50 37 chr1 76024028 76024189 -206169475 - L1ME4a LINE L1 -244 5877 5715 22 0 0 0 chr1 76024743 76024765 -206168899 + AT_rich Low_complexity Low_complexity 1 22 0 250 291 58 29 chr1 76025488 76025591 -206168073 - MIR SINE MIR -61 201 96 24 0 0 0 chr1 76026240 76026264 -206167400 + AT_rich Low_complexity Low_complexity 1 24 0 391 315 157 6 chr1 76026533 76026599 -206167065 - MIR SINE MIR -1 261 206 1203 231 100 6 chr1 76026599 76026910 -206166754 + MER58B DNA MER1_type 2 341 0 391 315 157 6 chr1 76026910 76027021 -206166643 - MIR SINE MIR -56 206 57 244 309 135 24 chr1 76027489 76027615 -206166049 - L2 LINE L2 -1 3271 3132 308 297 64 47 chr1 76028069 76028365 -206165299 + L1M3 LINE L1 4883 5183 -963 310 271 73 31 chr1 76028454 76028646 -206165018 + L1M3 LINE L1 5319 5518 -646 1353 248 54 83 chr1 76028714 76029280 -206164384 + L2 LINE L2 2764 3313 0 4250 117 10 44 chr1 76030037 76030394 -206163270 - Tigger1 DNA MER2_type 0 2418 2095 1530 193 30 10 chr1 76030394 76030689 -206162975 + AluJb SINE Alu 1 301 -11 4250 117 10 44 chr1 76030689 76031039 -206162625 - Tigger1 DNA MER2_type -323 2095 1735 1507 127 27 0 chr1 76031063 76031323 -206162341 - L1MA5A LINE L1 -5 6292 6026 11254 105 24 33 chr1 76031324 76031600 -206162064 - Tigger1 DNA MER2_type -683 1735 1458 1406 127 19 78 chr1 76031600 76031907 -206161757 + L1MA4 LINE L1 6007 6295 -5 11254 105 24 33 chr1 76031907 76032799 -206160865 - Tigger1 DNA MER2_type -960 1458 584 1877 167 6 13 chr1 76032799 76033110 -206160554 + AluJb SINE Alu 4 312 0 11254 105 24 33 chr1 76033110 76033690 -206159974 - Tigger1 DNA MER2_type -1834 584 1 286 250 59 0 chr1 76033929 76033997 -206159667 + L2 LINE L2 3241 3312 -1 1123 108 0 0 chr1 76034516 76034673 -206158991 - AluSg/x SINE Alu 0 312 156 27 0 0 0 chr1 76035097 76035124 -206158540 + AT_rich Low_complexity Low_complexity 1 27 0 1775 106 0 0 chr1 76035793 76036047 -206157617 + L1PA14 LINE L1 5908 6161 0 1843 156 7 16 chr1 76036143 76036450 -206157214 - AluSx SINE Alu -8 304 1 596 271 88 37 chr1 76036655 76036950 -206156714 - MLT1J LTR MaLR -200 311 2 239 319 72 18 chr1 76036950 76037116 -206156548 + L1ME LINE L1 5694 5868 -253 232 267 41 48 chr1 76037152 76037298 -206156366 + HAL1b LINE L1 1196 1340 -8 334 271 9 56 chr1 76037791 76037898 -206155766 + MIR SINE MIR 111 212 -50 285 51 0 0 chr1 76038413 76038452 -206155212 + (CA)n Simple_repeat Simple_repeat 2 40 0 314 213 299 39 chr1 76040493 76040620 -206153044 + MLT1K LTR MaLR 413 572 -16 27 0 0 0 chr1 76040874 76040901 -206152763 + AT_rich Low_complexity Low_complexity 1 27 0 2402 141 48 33 chr1 76041020 76041440 -206152224 - MSTB LTR MaLR 0 426 1 411 326 103 11 chr1 76041748 76041923 -206151741 + MIR SINE MIR 21 211 -51 487 176 56 19 chr1 76042125 76042233 -206151431 + MLT1K LTR MaLR 340 451 -137 399 301 49 12 chr1 76042456 76042619 -206151045 - MIR SINE MIR 0 262 94 525 273 153 44 chr1 76043395 76043806 -206149858 + LTR33 LTR ERVL 66 521 0 207 235 59 0 chr1 76043890 76043941 -206149723 - L2 LINE L2 -1 3271 3218 769 307 46 17 chr1 76044060 76044301 -206149363 + MIR SINE MIR 14 261 -1 274 298 124 29 chr1 76044502 76044777 -206148887 - L2 LINE L2 -158 3114 2814 246 32 0 0 chr1 76045440 76045471 -206148193 + (TG)n Simple_repeat Simple_repeat 2 32 0 43872 38 3 9 chr1 76049031 76055211 -206138453 + L1PA4 LINE L1 13 6155 0 543 256 64 59 chr1 76055527 76055746 -206137918 + MIR SINE MIR 27 246 -16 343 384 60 5 chr1 76055774 76055990 -206137674 - L2 LINE L2 -866 2448 2221 191 286 9 86 chr1 76056614 76056719 -206136945 + L2 LINE L2 1771 1867 -1447 243 282 129 43 chr1 76056911 76057074 -206136590 + MIR SINE MIR 67 243 -19 28 0 0 0 chr1 76057868 76057896 -206135768 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 76057943 76057974 -206135690 + AT_rich Low_complexity Low_complexity 1 31 0 420 241 53 8 chr1 76058023 76058156 -206135508 + L1M3 LINE L1 3552 3690 -2456 277 303 61 25 chr1 76058492 76058690 -206134974 + L1M3 LINE L1 3692 3896 -2250 24 91 0 0 chr1 76058777 76058843 -206134821 + AT_rich Low_complexity Low_complexity 1 66 0 1479 116 22 0 chr1 76058949 76059055 -206134609 + MER30 DNA MER1_type 1 103 -127 354 23 0 0 chr1 76059055 76059098 -206134566 + (CA)n Simple_repeat Simple_repeat 2 44 0 1479 116 22 0 chr1 76059098 76059216 -206134448 + MER30 DNA MER1_type 103 230 0 427 254 154 39 chr1 76059230 76059490 -206134174 + L2 LINE L2 3024 3313 0 582 306 118 22 chr1 76059493 76060803 -206132861 + L1M3 LINE L1 4141 5572 -749 905 203 26 16 chr1 76061031 76061223 -206132441 - MLT1J1 LTR MaLR -252 194 1 626 60 30 38 chr1 76061236 76061369 -206132295 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 41 66 0 0 chr1 76061645 76061721 -206131943 + AT_rich Low_complexity Low_complexity 1 76 0 331 245 95 0 chr1 76061789 76061908 -206131756 + L1M3 LINE L1 5669 5800 -368 4256 171 93 61 chr1 76061908 76062108 -206131556 - Charlie1 DNA MER1_type -1 2760 2568 1969 128 36 0 chr1 76062108 76062389 -206131275 + AluSx SINE Alu 1 291 -21 4256 171 93 61 chr1 76062389 76063350 -206130314 - Charlie1 DNA MER1_type -193 2568 1562 5134 31 2 2 chr1 76063352 76063962 -206129702 - L1PA4 LINE L1 0 6155 5546 2234 15 0 0 chr1 76063962 76064228 -206129436 + L1PA4 LINE L1 5275 5540 -615 404 230 20 20 chr1 76064228 76064328 -206129336 - Charlie1 DNA MER1_type -1187 1574 1475 425 236 75 85 chr1 76064328 76064527 -206129137 + MIR SINE MIR 49 245 -17 3835 32 2 52 chr1 76064593 76065097 -206128567 - L1PA5 LINE L1 0 6154 5676 2650 137 92 79 chr1 76065498 76065986 -206127678 + MER4A LTR ERV1 1 501 -163 2012 118 36 0 chr1 76065986 76066266 -206127398 + AluSc SINE Alu 1 290 -19 2650 137 92 79 chr1 76066266 76066433 -206127231 + MER4A LTR ERV1 501 664 0 237 309 62 0 chr1 76067314 76067395 -206126269 - MIR3 SINE MIR -46 162 77 2086 138 32 32 chr1 76068229 76068636 -206125028 + L1MA8 LINE L1 5882 6288 -3 1621 173 41 0 chr1 76068658 76068929 -206124735 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr1 76068934 76068957 -206124707 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 296 230 109 115 chr1 76070391 76070483 -206123181 + MIR SINE MIR 25 118 -144 865 224 191 12 chr1 76070483 76070756 -206122908 + AluSg SINE Alu 1 316 0 296 230 109 115 chr1 76070756 76070827 -206122837 + MIR SINE MIR 118 188 -74 284 224 119 119 chr1 76070884 76071018 -206122646 + MIR SINE MIR 47 180 -82 2377 80 0 0 chr1 76071055 76071381 -206122283 + AluY SINE Alu 1 311 0 500 333 114 0 chr1 76071917 76072181 -206121483 - L2 LINE L2 -623 2691 2398 203 297 31 0 chr1 76072720 76072784 -206120880 + MIR3 SINE MIR 113 178 -30 212 275 14 0 chr1 76072815 76072884 -206120780 + L2 LINE L2 2711 2780 -534 1487 142 146 7 chr1 76073121 76073432 -206120232 - MLT1A1 LTR MaLR 0 428 18 355 254 172 8 chr1 76073443 76073565 -206120099 + MIR SINE MIR 108 249 -13 237 196 0 0 chr1 76073696 76073752 -206119912 + CT-rich Low_complexity Low_complexity 1 56 0 380 291 8 0 chr1 76073874 76073991 -206119673 - MER103 DNA DNA -46 120 3 1301 269 46 30 chr1 76074050 76074327 -206119337 + MLT1I LTR MaLR 30 316 -93 7765 16 2 1 chr1 76074327 76075679 -206117985 + L1PA3 LINE L1 4802 6155 0 1301 269 46 30 chr1 76075679 76075769 -206117895 + MLT1I LTR MaLR 316 403 -6 518 256 63 68 chr1 76076094 76076301 -206117363 + MIR SINE MIR 54 259 -3 577 246 148 84 chr1 76076691 76077049 -206116615 + L2 LINE L2 2450 2830 -484 5161 139 53 37 chr1 76077322 76078339 -206115325 + L1MA9 LINE L1 5280 6312 0 29 60 0 0 chr1 76078381 76078431 -206115233 + AT_rich Low_complexity Low_complexity 1 50 0 216 189 0 0 chr1 76079108 76079145 -206114519 - L2 LINE L2 -21 3292 3256 23 33 0 0 chr1 76079409 76079439 -206114225 + AT_rich Low_complexity Low_complexity 1 30 0 594 215 51 57 chr1 76079494 76079671 -206113993 - L2 LINE L2 0 3313 3138 241 308 32 70 chr1 76080433 76080589 -206113075 - L2 LINE L2 -213 3059 2910 344 297 18 96 chr1 76080711 76080942 -206112722 + MIR SINE MIR 2 220 -42 414 0 0 0 chr1 76081338 76081384 -206112280 + (TG)n Simple_repeat Simple_repeat 2 47 0 407 194 87 10 chr1 76081907 76082010 -206111654 - Charlie1 DNA MER1_type -1089 1672 1562 5002 38 2 7 chr1 76082012 76082622 -206111042 - L1PA4 LINE L1 -3 6152 5546 2228 15 0 0 chr1 76082622 76082888 -206110776 + L1PA4 LINE L1 5275 5540 -615 361 250 20 20 chr1 76082888 76082988 -206110676 - Charlie1 DNA MER1_type -1187 1574 1475 398 241 75 85 chr1 76082988 76083187 -206110477 + MIR SINE MIR 49 245 -17 2679 42 0 6 chr1 76083253 76083583 -206110081 - L1PA5 LINE L1 -3 6151 5824 2311 236 31 14 chr1 76083590 76084250 -206109414 - L1M4 LINE L1 -2820 3326 2652 2429 67 0 13 chr1 76084250 76084563 -206109101 - AluY SINE Alu -2 309 1 2311 236 31 14 chr1 76084563 76084608 -206109056 - L1M4 LINE L1 -3494 2652 2609 1091 105 13 7 chr1 76084617 76084769 -206108895 + AluSq SINE Alu 2 154 -159 21 36 0 0 chr1 76085631 76085659 -206108005 + AT_rich Low_complexity Low_complexity 1 28 0 2229 93 0 3 chr1 76086031 76086321 -206107343 - AluSc SINE Alu -20 289 1 210 188 174 87 chr1 76086911 76086980 -206106684 + L2 LINE L2 3230 3304 -9 255 156 169 78 chr1 76086981 76087058 -206106606 + L2 LINE L2 3230 3313 0 645 221 0 8 chr1 76087679 76087806 -206105858 + FLAM_C SINE Alu 1 126 -17 26 50 0 0 chr1 76087806 76087846 -206105818 + AT_rich Low_complexity Low_complexity 1 40 0 351 0 0 0 chr1 76088382 76088421 -206105243 + (CA)n Simple_repeat Simple_repeat 2 40 0 344 309 15 18 chr1 76088641 76088867 -206104797 - L1ME3 LINE L1 -249 5913 5691 1792 193 0 0 chr1 76088936 76089241 -206104423 + AluJo SINE Alu 1 305 -7 31 26 0 0 chr1 76089733 76089771 -206103893 + AT_rich Low_complexity Low_complexity 1 38 0 34 55 0 0 chr1 76090015 76090070 -206103594 + AT_rich Low_complexity Low_complexity 1 55 0 2205 87 27 7 chr1 76090281 76090580 -206103084 + AluSq SINE Alu 1 305 -8 227 250 96 0 chr1 76091163 76091215 -206102449 - L2 LINE L2 -6 3266 3210 212 191 24 0 chr1 76091313 76091355 -206102309 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 657 238 7 180 chr1 76092025 76092436 -206101228 - L2 LINE L2 -4 3309 2970 24 32 0 0 chr1 76092444 76092475 -206101189 + AT_rich Low_complexity Low_complexity 1 31 0 473 234 99 126 chr1 76092558 76092731 -206100933 - L1ME LINE L1 -356 5765 5589 2202 122 3 0 chr1 76092731 76093043 -206100621 - AluSq SINE Alu 0 313 1 473 234 99 126 chr1 76093043 76093386 -206100278 - L1ME LINE L1 -532 5589 5263 21 71 0 0 chr1 76093461 76093503 -206100161 + AT_rich Low_complexity Low_complexity 1 42 0 1434 164 69 101 chr1 76094414 76094552 -206099112 + MLT2D LTR ERVL 1 142 -272 9492 23 1 0 chr1 76094552 76096445 -206097219 - L1PA3 LINE L1 0 6155 4262 1434 164 69 101 chr1 76096445 76096684 -206096980 + MLT2D LTR ERVL 142 366 -48 309 95 0 0 chr1 76096745 76096787 -206096877 + MLT2D LTR ERVL 349 390 -7 2738 16 0 6 chr1 76096811 76097125 -206096539 - AluYb8 SINE Alu -6 312 1 1956 151 3 0 chr1 76097951 76098242 -206095422 - AluSx SINE Alu -20 292 1 504 207 21 71 chr1 76099014 76099154 -206094510 + FLAM_A SINE Alu 1 133 0 441 345 28 43 chr1 76099724 76099979 -206093685 + L3 LINE CR1 1252 1502 -75 364 317 45 18 chr1 76100008 76100229 -206093435 - L1ME3 LINE L1 -587 5575 5349 413 244 154 4 chr1 76100256 76100490 -206093174 - L1ME3 LINE L1 -847 5299 5031 631 284 116 13 chr1 76100595 76100820 -206092844 - LTR16A LTR ERVL 0 450 203 6785 247 53 13 chr1 76100839 76102012 -206091652 + L1M4 LINE L1 2110 3398 -2748 1699 174 0 33 chr1 76102012 76102137 -206091527 + AluJo SINE Alu 13 141 -171 1869 143 0 14 chr1 76102137 76102466 -206091198 + AluSx SINE Alu 1 325 0 1699 174 0 33 chr1 76102466 76102638 -206091026 + AluJo SINE Alu 141 301 -11 6785 247 53 13 chr1 76102638 76103498 -206090166 + L1M4 LINE L1 3398 4223 -1923 722 160 13 160 chr1 76103542 76103779 -206089885 - MER20 DNA MER1_type -1 218 17 2354 83 15 0 chr1 76104126 76104463 -206089201 + L1MA2 LINE L1 5963 6304 0 998 139 8 118 chr1 76104865 76105110 -206088554 - L1MB8 LINE L1 -9 6169 5952 25 0 0 0 chr1 76105925 76105950 -206087714 + AT_rich Low_complexity Low_complexity 1 25 0 277 405 36 0 chr1 76106711 76106822 -206086842 - L2 LINE L2 -2 3270 3156 488 16 0 16 chr1 76106829 76106891 -206086773 + (TAGA)n Simple_repeat Simple_repeat 1 61 0 686 194 0 8 chr1 76107649 76107965 -206085699 + FLAM_A SINE Alu 1 315 0 231 146 0 0 chr1 76107965 76108006 -206085658 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2213 93 3 10 chr1 76108728 76109029 -206084635 + AluSc SINE Alu 1 299 -10 236 186 0 0 chr1 76109126 76109169 -206084495 + L2 LINE L2 3271 3313 0 21 57 0 0 chr1 76109266 76109301 -206084363 + AT_rich Low_complexity Low_complexity 1 35 0 1455 205 43 35 chr1 76109815 76110186 -206083478 + MLT1A2 LTR MaLR 1 374 0 411 297 7 35 chr1 76110490 76110635 -206083029 + L2 LINE L2 3173 3313 0 699 161 0 8 chr1 76110797 76110921 -206082743 + FLAM_C SINE Alu 4 126 -17 653 276 71 30 chr1 76111130 76111398 -206082266 + MARNA DNA Mariner 15 293 -293 740 267 12 0 chr1 76111414 76111579 -206082085 + MIR SINE MIR 8 174 -88 578 269 63 11 chr1 76111688 76111863 -206081801 + MARNA DNA Mariner 134 317 -269 966 233 88 0 chr1 76111865 76112080 -206081584 + MIR SINE MIR 8 241 -21 263 364 18 0 chr1 76112119 76112229 -206081435 - MARNA DNA Mariner -419 167 56 4759 171 40 46 chr1 76112803 76113626 -206080038 - ERVL LTR ERVL -2503 3261 2443 727 158 7 50 chr1 76113626 76113765 -206079899 - FLAM_C SINE Alu 0 133 1 4759 171 40 46 chr1 76113765 76113912 -206079752 - ERVL LTR ERVL -3321 2443 2297 4129 161 29 54 chr1 76113912 76114472 -206079192 - L1MC1 LINE L1 -173 6160 5588 1866 151 0 22 chr1 76114472 76114789 -206078875 - AluSx SINE Alu 0 312 3 4129 161 29 54 chr1 76114789 76115010 -206078654 - L1MC1 LINE L1 -745 5588 5478 1948 155 0 7 chr1 76115010 76115307 -206078357 + AluJb SINE Alu 1 295 -17 4129 161 29 54 chr1 76115307 76115620 -206078044 - L1MC1 LINE L1 -855 5478 5159 1929 156 0 7 chr1 76115839 76116134 -206077530 + AluJb SINE Alu 4 296 -16 201 121 0 0 chr1 76116146 76116179 -206077485 + (GGA)n Simple_repeat Simple_repeat 1 33 0 2362 232 56 5 chr1 76116204 76116845 -206076819 - L1M4 LINE L1 -743 5403 4730 320 211 13 0 chr1 76116846 76116922 -206076742 + L1ME2 LINE L1 3013 3089 -3057 225 208 0 89 chr1 76116976 76117077 -206076587 + L1ME2 LINE L1 4909 5000 -1146 * 376 231 41 62 chr1 76117045 76117193 -206076471 + L1MA9 LINE L1 6151 6291 0 1962 126 0 7 chr1 76117199 76117510 -206076154 + AluSx SINE Alu 3 311 0 2354 237 29 56 chr1 76117512 76117829 -206075835 + L1ME2 LINE L1 4991 5315 -851 2250 88 10 3 chr1 76117829 76118135 -206075529 + AluSx SINE Alu 1 308 -4 2354 237 29 56 chr1 76118135 76118962 -206074702 + L1ME2 LINE L1 5315 6162 -4 401 187 26 199 chr1 76118965 76119232 -206074432 + Charlie2 DNA MER1_type 2641 2861 -1 388 253 99 99 chr1 76119628 76119830 -206073834 + MIR3 SINE MIR 4 205 -3 907 172 12 18 chr1 76120213 76120376 -206073288 - FRAM SINE Alu -14 162 1 1822 210 76 35 chr1 76120946 76121431 -206072233 - MLT1D LTR MaLR 0 505 1 8983 223 83 39 chr1 76121451 76125627 -206068037 + L1MDa LINE L1 1 4375 -2165 1015 169 25 25 chr1 76125628 76125829 -206067835 + MLT1A1 LTR MaLR 1 201 -164 3286 188 38 19 chr1 76125856 76126488 -206067176 + MER73 LTR ERVL 1 644 0 582 213 22 7 chr1 76126493 76126629 -206067035 + MLT1A1 LTR MaLR 228 365 0 1745 231 23 66 chr1 76126629 76127031 -206066633 + L1MDa LINE L1 4373 4791 -1749 1668 195 3 3 chr1 76127031 76127329 -206066335 + AluJb SINE Alu 3 300 -12 1745 231 23 66 chr1 76127329 76127442 -206066222 + L1MDa LINE L1 4791 4861 -1679 2081 101 9 31 chr1 76127442 76127760 -206065904 + AluSx SINE Alu 1 311 -1 1745 231 23 66 chr1 76127760 76127850 -206065814 + L1MDa LINE L1 4861 4953 -1587 2737 186 26 17 chr1 76127852 76128384 -206065280 + MER74A LTR ERVL 22 558 0 3778 237 34 29 chr1 76128394 76128767 -206064897 + L1MC2 LINE L1 2244 2614 -3532 2029 118 3 7 chr1 76128767 76129054 -206064610 - AluSq SINE Alu -26 287 2 3778 237 34 29 chr1 76129054 76129108 -206064556 + L1MC2 LINE L1 2614 2666 -3480 2394 67 0 16 chr1 76129108 76129422 -206064242 + AluY SINE Alu 1 309 -2 3778 237 34 29 chr1 76129422 76130089 -206063575 + L1MC2 LINE L1 2666 3328 -2818 2640 47 0 0 chr1 76130089 76130409 -206063255 + L1PA5 LINE L1 5824 6166 0 187 43 0 0 chr1 76130409 76130432 -206063232 + (GAAAA)n Simple_repeat Simple_repeat 2 80 0 3778 237 34 29 chr1 76130432 76130457 -206063207 + L1MC2 LINE L1 3328 3351 -2795 2018 77 3 148 chr1 76130457 76130808 -206062856 - AluSp SINE Alu -13 300 1 3778 237 34 29 chr1 76130808 76131170 -206062494 + L1MC2 LINE L1 3351 3710 -2436 2325 71 0 16 chr1 76131170 76131478 -206062186 + AluY SINE Alu 1 303 -8 3778 237 34 29 chr1 76131478 76131846 -206061818 + L1MC2 LINE L1 3710 4102 -2044 5297 185 38 22 chr1 76131858 76133099 -206060565 + L1MC2 LINE L1 5080 6342 -2 260 301 129 21 chr1 76133322 76133415 -206060249 - L3 LINE CR1 -11 1566 1464 766 174 148 36 chr1 76134511 76134707 -206058957 - MER20 DNA MER1_type -1 218 1 702 184 65 42 chr1 76135338 76135506 -206058158 + FAM SINE Alu 1 172 -3 225 65 0 0 chr1 76136364 76136395 -206057269 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2067 99 25 3 chr1 76136402 76136686 -206056978 - AluSq SINE Alu -23 290 1 375 105 53 0 chr1 76137112 76137188 -206056476 + L1MA10 LINE L1 6253 6332 -2 2041 83 36 4 chr1 76137498 76137774 -206055890 + AluSc SINE Alu 1 285 -24 2028 139 3 3 chr1 76138069 76138372 -206055292 + AluSx SINE Alu 2 304 -8 1951 154 7 0 chr1 76138959 76139257 -206054407 + AluSx SINE Alu 7 306 -6 1875 246 169 17 chr1 76139390 76139715 -206053949 - HAL1 LINE L1 -630 1877 1603 1623 134 94 88 chr1 76139715 76140088 -206053576 - THE1C LTR MaLR 0 375 1 1875 246 169 17 chr1 76140088 76140530 -206053134 - HAL1 LINE L1 -904 1603 993 361 308 68 54 chr1 76140623 76140974 -206052690 - L1MEd LINE L1 -1886 4243 3888 2199 170 57 63 chr1 76141249 76141722 -206051942 + MLT2B1 LTR ERVL 1 475 -45 2122 108 7 0 chr1 76141722 76142032 -206051632 + AluSc SINE Alu 1 312 0 2199 170 57 63 chr1 76142032 76142043 -206051621 + MLT2B1 LTR ERVL 475 485 -35 213 39 0 0 chr1 76142043 76142069 -206051595 + (TA)n Simple_repeat Simple_repeat 2 27 0 2199 170 57 63 chr1 76142069 76142105 -206051559 + MLT2B1 LTR ERVL 485 520 0 190 263 12 62 chr1 76142732 76142812 -206050852 + L3 LINE CR1 356 431 -1146 2336 90 7 0 chr1 76143091 76143392 -206050272 + AluSq SINE Alu 1 303 -10 2154 123 10 0 chr1 76143399 76143708 -206049956 + AluSx SINE Alu 1 312 0 688 177 43 9 chr1 76143814 76143980 -206049684 + MIR SINE MIR 8 231 -31 475 260 108 46 chr1 76144701 76145137 -206048527 - L1MEd LINE L1 -3207 2922 2432 2022 120 0 3 chr1 76145137 76145461 -206048203 - AluSx SINE Alu 0 323 1 475 260 108 46 chr1 76145461 76145542 -206048122 - L1MEd LINE L1 -3697 2432 2357 33 56 0 0 chr1 76145577 76145631 -206048033 + AT_rich Low_complexity Low_complexity 1 54 0 195 42 0 0 chr1 76145640 76145664 -206048000 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1661 147 64 4 chr1 76145679 76145945 -206047719 - AluSx SINE Alu -30 282 1 450 94 0 0 chr1 76146085 76146149 -206047515 + (TTCTCC)n Simple_repeat Simple_repeat 4 67 0 1367 149 40 102 chr1 76146161 76146484 -206047180 - AluJo SINE Alu -7 305 3 231 252 97 58 chr1 76146487 76146590 -206047074 - L1MEd LINE L1 -5450 669 563 240 163 0 0 chr1 76146768 76146811 -206046853 + T-rich Low_complexity Low_complexity 1 43 0 607 247 12 6 chr1 76147035 76147205 -206046459 + L1M4 LINE L1 2328 2498 -3648 240 50 25 25 chr1 76147301 76147341 -206046323 + MADE1 DNA Mariner 1 40 -40 23 78 0 0 chr1 76147361 76147412 -206046252 + AT_rich Low_complexity Low_complexity 1 51 0 37 81 0 0 chr1 76149002 76149088 -206044576 + AT_rich Low_complexity Low_complexity 1 86 0 214 303 145 35 chr1 76149143 76149288 -206044376 - MIR3 SINE MIR -39 169 9 340 237 108 0 chr1 76150323 76150416 -206043248 - MER5A DNA MER1_type 0 189 87 10937 217 76 34 chr1 76150416 76152814 -206040850 - L1MC3 LINE L1 -10 8570 6275 2262 130 28 22 chr1 76152814 76153176 -206040488 + THE1B LTR MaLR 1 364 0 11591 96 7 1 chr1 76153176 76154746 -206038918 + THE1B-int LTR MaLR 1 1580 0 2182 126 39 22 chr1 76154746 76155104 -206038560 + THE1B LTR MaLR 1 364 0 10937 217 76 34 chr1 76155104 76156231 -206037433 - L1MC3 LINE L1 -2305 6275 5197 2122 118 3 0 chr1 76156231 76156520 -206037144 - AluSq SINE Alu -23 290 1 10937 217 76 34 chr1 76156520 76156664 -206037000 - L1MC3 LINE L1 -3383 5197 5061 3932 146 48 15 chr1 76156664 76157411 -206036253 - L1MA7 LINE L1 -13 6278 5507 10937 217 76 34 chr1 76157411 76157626 -206036038 - L1MC3 LINE L1 -3519 5061 4498 1056 172 20 20 chr1 76158084 76158334 -206035330 - L1MC3 LINE L1 -3177 3764 3515 852 210 302 3 chr1 76158349 76158640 -206035024 - L1MC3 LINE L1 -4538 2403 2026 735 171 7 27 chr1 76158640 76158786 -206034878 + FLAM_C SINE Alu 1 143 0 2612 239 63 60 chr1 76158799 76160512 -206033152 - L1MC3 LINE L1 -4851 1571 3 209 167 0 0 chr1 76160513 76160549 -206033115 - MER5A DNA MER1_type -74 115 80 22 35 0 0 chr1 76160553 76160582 -206033082 + AT_rich Low_complexity Low_complexity 1 29 0 1478 184 58 50 chr1 76160607 76160762 -206032902 - MER63B DNA MER1_type -679 383 231 1937 116 47 0 chr1 76160762 76161038 -206032626 + AluSg SINE Alu 3 291 -19 1478 184 58 50 chr1 76161038 76161262 -206032402 - MER63B DNA MER1_type -831 231 1 368 347 0 16 chr1 76161262 76161386 -206032278 - MER5B DNA MER1_type -56 122 1 2207 93 0 0 chr1 76161481 76161786 -206031878 + AluSg SINE Alu 1 305 0 388 311 38 49 chr1 76161924 76162107 -206031557 - L2 LINE L2 -527 2787 2607 441 232 56 113 chr1 76162244 76162510 -206031154 + MLT1J LTR MaLR 99 438 -177 226 213 88 12 chr1 76162565 76162645 -206031019 + MLT1L LTR MaLR 519 604 -11 200 386 19 51 chr1 76162867 76163025 -206030639 + L2 LINE L2 2941 3093 -179 1536 169 31 4 chr1 76163103 76163364 -206030300 + AluJb SINE Alu 11 278 -34 1256 144 0 5 chr1 76163383 76163570 -206030094 + AluSq SINE Alu 1 186 -127 21 71 0 0 chr1 76164148 76164190 -206029474 + AT_rich Low_complexity Low_complexity 1 42 0 2287 91 0 7 chr1 76164195 76164493 -206029171 - AluSx SINE Alu -16 296 1 2061 95 4 7 chr1 76165362 76165809 -206027855 + AluSq SINE Alu 11 456 0 778 29 19 9 chr1 76165941 76166046 -206027618 + (GAAA)n Simple_repeat Simple_repeat 3 108 0 2916 146 29 2 chr1 76166737 76167215 -206026449 + Tigger3b DNA MER2_type 1 491 -740 964 264 176 22 chr1 76167218 76168109 -206025555 - L1M4 LINE L1 -747 5399 4372 1286 209 50 18 chr1 76168129 76168406 -206025258 + AluJo SINE Alu 5 290 -22 1061 269 158 21 chr1 76168480 76168852 -206024812 - L1M4 LINE L1 -1948 4198 3878 207 0 0 0 chr1 76168852 76168875 -206024789 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1061 269 158 21 chr1 76168875 76169226 -206024438 - L1M4 LINE L1 -2268 3878 3376 387 230 81 20 chr1 76169235 76169385 -206024279 - L1MB7 LINE L1 -13 6167 6017 1467 188 68 39 chr1 76169392 76169806 -206023858 + MSTC LTR MaLR 1 426 -2 5222 222 180 26 chr1 76169806 76171309 -206022355 + MSTC-int LTR MaLR 2 1735 0 1401 203 112 28 chr1 76171310 76171704 -206021960 + MSTC LTR MaLR 2 428 0 4559 196 61 51 chr1 76171721 76172989 -206020675 - L1MB7 LINE L1 -192 5992 4739 674 129 0 0 chr1 76172989 76173108 -206020556 - AluSp/q SINE Alu 0 312 194 1651 112 5 0 chr1 76173108 76173332 -206020332 - AluSx SINE Alu -87 225 1 4559 196 61 51 chr1 76173332 76174044 -206019620 - L1MB7 LINE L1 -1444 4740 3913 1148 219 26 26 chr1 76174046 76174398 -206019266 - L1M4 LINE L1 -2916 3230 2879 344 288 129 9 chr1 76174446 76174475 -206019189 - L1MC1 LINE L1 -462 5871 5843 4917 216 39 38 chr1 76174475 76174714 -206018950 - L1MA5A LINE L1 -470 5827 5590 1565 167 18 18 chr1 76174714 76174989 -206018675 - AluJo SINE Alu -8 304 30 473 176 0 0 chr1 76174990 76175064 -206018600 - AluJ/FLAM SINE Alu -238 74 1 4917 216 39 38 chr1 76175064 76176429 -206017235 - L1MA5A LINE L1 -707 5590 4174 1973 128 3 10 chr1 76176429 76176726 -206016938 - AluSx SINE Alu -17 295 1 4917 216 39 38 chr1 76176726 76176864 -206016800 - L1MA5A LINE L1 -2123 4174 4038 256 226 0 19 chr1 76176915 76177021 -206016643 + (TA)n Simple_repeat Simple_repeat 1 104 0 1413 230 94 11 chr1 76177068 76177685 -206015979 - L1ME LINE L1 -427 5739 5073 347 298 212 0 chr1 76178426 76178624 -206015040 - MIR SINE MIR 0 262 23 * 661 222 21 0 chr1 76178623 76178767 -206014897 + MIR SINE MIR 105 251 -11 2322 91 3 0 chr1 76178851 76179149 -206014515 - AluSg SINE Alu -7 303 5 743 219 153 0 chr1 76179418 76179614 -206014050 + L2 LINE L2 3088 3313 0 1298 287 112 34 chr1 76180497 76181085 -206012579 + L2 LINE L2 533 1166 -2148 882 238 52 20 chr1 76181255 76181598 -206012066 + MER74A LTR ERVL 121 554 -4 1390 193 98 17 chr1 76181711 76182007 -206011657 - MER21B LTR ERV1 -543 320 1 311 146 18 18 chr1 76182108 76182163 -206011501 + MER4A LTR ERV1 44 98 -566 1678 144 0 76 chr1 76182163 76182192 -206011472 + MER4A LTR ERV1 261 291 -373 1949 159 7 0 chr1 76182192 76182488 -206011176 - AluSx SINE Alu -14 298 1 1678 144 0 76 chr1 76182488 76182548 -206011116 + MER4A LTR ERV1 291 354 -310 1788 144 46 3 chr1 76182548 76182833 -206010831 + AluSx SINE Alu 1 297 -15 1678 144 0 76 chr1 76182833 76183116 -206010548 + MER4A LTR ERV1 354 664 0 2884 79 88 53 chr1 76183119 76183641 -206010023 + MER4A-int LTR ERV1 1 589 -6009 3740 126 37 52 chr1 76183651 76184049 -206009615 + MER4A-int LTR ERV1 215 602 -6156 2467 63 0 7 chr1 76184049 76184351 -206009313 + AluY SINE Alu 1 300 -11 3740 126 37 52 chr1 76184351 76184593 -206009071 + MER4A-int LTR ERV1 602 846 -5912 1259 87 48 29 chr1 76184619 76184825 -206008839 + MER4A-int LTR ERV1 950 1159 -5599 4205 81 61 24 chr1 76184844 76185550 -206008114 + MER4A-int LTR ERV1 1764 2495 -4103 1535 128 58 0 chr1 76185550 76185793 -206007871 - LTR8 LTR ERV1 -434 257 1 2474 126 72 18 chr1 76185793 76186190 -206007474 + MER4A-int LTR ERV1 2737 3174 -3424 1480 155 147 0 chr1 76186190 76186455 -206007209 + AluSq SINE Alu 1 304 -9 2474 126 72 18 chr1 76186455 76186611 -206007053 + MER4A-int LTR ERV1 3174 3320 -3278 14116 131 70 28 chr1 76186644 76189188 -206004476 + MER4A-int LTR ERV1 3949 6598 0 599 128 32 0 chr1 76189189 76189283 -206004381 + MER4A LTR ERV1 1 97 -567 * 1849 132 6 27 chr1 76189280 76189637 -206004027 + MER4A LTR ERV1 257 664 0 185 327 75 19 chr1 76189638 76189745 -206003919 + L2 LINE L2 2277 2389 -925 1915 262 86 5 chr1 76189756 76190313 -206003351 + L1MCa LINE L1 148 749 -5677 1673 211 151 78 chr1 76190313 76191046 -206002618 + LTR1B LTR ERV1 1 787 -39 1955 177 84 9 chr1 76191092 76191544 -206002120 + L1MCb LINE L1 664 1149 -4896 696 264 172 36 chr1 76192027 76192177 -206001487 - L2 LINE L2 0 3313 3185 1434 170 21 112 chr1 76192177 76192507 -206001157 - AluJb SINE Alu -11 301 2 696 264 172 36 chr1 76192507 76192716 -206000948 - L2 LINE L2 -128 3185 2905 745 257 158 6 chr1 76192915 76193238 -206000426 - L2 LINE L2 -758 2556 2185 446 276 76 0 chr1 76193278 76193383 -206000281 + Tigger3(Golem) DNA MER2_type 30 142 -2887 * 866 92 55 266 chr1 76193380 76193707 -205999957 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 574 321 59 15 chr1 76193724 76193995 -205999669 - L2 LINE L2 -1213 2101 1819 309 300 82 35 chr1 76194026 76194196 -205999468 - L2 LINE L2 -1973 1341 1164 2178 106 0 3 chr1 76194451 76194753 -205998911 - AluSx SINE Alu -11 301 1 340 310 142 31 chr1 76195150 76195376 -205998288 - L1M2 LINE L1 -5821 1028 778 291 176 0 0 chr1 76196005 76196056 -205997608 + MIR SINE MIR 81 131 -77 21 0 0 0 chr1 76197802 76197823 -205995841 + AT_rich Low_complexity Low_complexity 1 21 0 629 289 57 46 chr1 76197887 76198150 -205995514 + L3 LINE CR1 1307 1572 -5 21 0 0 0 chr1 76198159 76198180 -205995484 + AT_rich Low_complexity Low_complexity 1 21 0 180 152 0 0 chr1 76199115 76199148 -205994516 + T-rich Low_complexity Low_complexity 3 35 0 25 0 0 0 chr1 76200389 76200414 -205993250 + GC_rich Low_complexity Low_complexity 1 25 0 308 343 71 47 chr1 76200459 76200713 -205992951 - L1M2 LINE L1 -5916 933 674 462 203 62 8 chr1 76200721 76200849 -205992815 - L1M4 LINE L1 -1367 4779 4645 21 0 0 0 chr1 76202440 76202461 -205991203 + AT_rich Low_complexity Low_complexity 1 21 0 322 310 62 35 chr1 76202537 76202682 -205990982 - MIR3 SINE MIR -35 173 25 1703 149 47 17 chr1 76202689 76202990 -205990674 - AluJo SINE Alu 0 312 3 185 195 24 0 chr1 76203623 76203664 -205990000 - MER5C DNA MER1_type -201 123 82 239 250 58 29 chr1 76203919 76204023 -205989641 - L1ME4a LINE L1 -37 6084 5978 313 316 26 20 chr1 76204193 76204345 -205989319 - L1ME4a LINE L1 -2017 5791 5639 1856 104 29 45 chr1 76204518 76204826 -205988838 - AluSq SINE Alu -6 307 5 194 340 130 0 chr1 76205096 76205196 -205988468 + MIR SINE MIR 37 149 -59 1899 142 7 4 chr1 76205269 76205573 -205988091 + AluSx SINE Alu 1 305 0 213 39 0 0 chr1 76208231 76208257 -205985407 + (T)n Simple_repeat Simple_repeat 1 26 0 254 221 202 19 chr1 76208673 76208777 -205984887 + Charlie8 DNA MER1_type 92 214 -2203 2127 130 7 0 chr1 76209654 76209953 -205983711 + AluSx SINE Alu 1 301 -11 325 117 39 0 chr1 76211470 76211547 -205982117 + CT-rich Low_complexity Low_complexity 5 84 0 819 173 0 0 chr1 76211550 76211683 -205981981 - FLAM_C SINE Alu 0 133 1 701 284 25 63 chr1 76211841 76212080 -205981584 + MIR SINE MIR 19 248 -14 1804 188 3 0 chr1 76212506 76212815 -205980849 - AluJb SINE Alu -2 310 1 1365 188 83 28 chr1 76212922 76213058 -205980606 + MER2 DNA MER2_type 1 128 -216 450 0 0 0 chr1 76213058 76213108 -205980556 + (TA)n Simple_repeat Simple_repeat 1 50 0 1365 188 83 28 chr1 76213108 76213296 -205980368 + MER2 DNA MER2_type 128 343 -1 1522 138 86 15 chr1 76213388 76213657 -205980007 + AluJo SINE Alu 19 306 -6 23 33 0 0 chr1 76213862 76213892 -205979772 + AT_rich Low_complexity Low_complexity 1 30 0 425 324 132 30 chr1 76214396 76214791 -205978873 + L2 LINE L2 1728 2162 -1152 539 270 49 32 chr1 76214808 76214993 -205978671 + MER5A DNA MER1_type 1 188 -1 907 306 165 37 chr1 76215026 76215993 -205977671 + L2 LINE L2 2218 3313 0 1390 213 0 22 chr1 76216401 76216674 -205976990 + AluJo SINE Alu 1 267 -45 2276 118 0 0 chr1 76217895 76218199 -205975465 - AluSx SINE Alu -8 304 1 22 56 0 0 chr1 76218334 76218370 -205975294 + AT_rich Low_complexity Low_complexity 1 36 0 1293 153 5 5 chr1 76219009 76219218 -205974446 - AluJo SINE Alu -101 211 3 868 181 5 43 chr1 76219364 76219552 -205974112 - AluJo SINE Alu -11 301 121 407 268 333 12 chr1 76219705 76219873 -205973791 + MIR SINE MIR 36 257 -5 1877 138 0 11 chr1 76220440 76220723 -205972941 - AluJb SINE Alu -19 293 14 2136 137 0 13 chr1 76221379 76221694 -205971970 - AluSx SINE Alu 0 312 2 2197 118 0 9 chr1 76222485 76222800 -205970864 - AluSx SINE Alu 0 312 1 559 216 45 102 chr1 76223079 76223255 -205970409 + MER5A DNA MER1_type 1 166 -23 180 353 52 17 chr1 76223170 76223286 -205970378 - MER5A DNA MER1_type -65 124 5 * 1786 159 32 0 chr1 76223932 76224215 -205969449 + AluJb SINE Alu 1 292 -20 431 286 78 31 chr1 76225109 76225301 -205968363 + MIR SINE MIR 6 206 -56 180 0 0 0 chr1 76225379 76225399 -205968265 + (T)n Simple_repeat Simple_repeat 1 20 0 261 151 0 0 chr1 76225916 76225969 -205967695 + GA-rich Low_complexity Low_complexity 1 53 0 729 198 243 9 chr1 76226329 76226551 -205967113 - L1MD3 LINE L1 -15 7980 7707 25 31 0 0 chr1 76227557 76227589 -205966075 + AT_rich Low_complexity Low_complexity 1 32 0 804 101 7 43 chr1 76227729 76227867 -205965797 + AluJ SINE Alu 1 133 -169 22 0 0 0 chr1 76228202 76228224 -205965440 + AT_rich Low_complexity Low_complexity 1 22 0 693 158 0 31 chr1 76228321 76228448 -205965216 + FLAM_A SINE Alu 1 123 -10 238 388 78 0 chr1 76229054 76229170 -205964494 + MIR SINE MIR 21 145 -63 428 275 51 22 chr1 76229357 76229495 -205964169 - MER5B DNA MER1_type 0 178 37 717 214 46 0 chr1 76230191 76230322 -205963342 - MER5A DNA MER1_type -3 186 50 1034 125 72 0 chr1 76230322 76230474 -205963190 + AluJb SINE Alu 133 295 -17 234 250 39 0 chr1 76230475 76230527 -205963137 - MER5A DNA MER1_type -135 54 1 1209 83 8 80 chr1 76231530 76231794 -205961870 + AluSx SINE Alu 34 278 -34 2216 98 7 10 chr1 76231938 76232235 -205961429 - AluSq SINE Alu -17 296 1 2360 107 3 3 chr1 76232306 76232615 -205961049 - AluSp SINE Alu -4 309 1 211 188 10 69 chr1 76233234 76233335 -205960329 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 3137 110 30 15 chr1 76233384 76233912 -205959752 - L1MA2 LINE L1 0 6304 5769 5988 123 28 6 chr1 76233913 76235637 -205958027 - L1PA5 LINE L1 -14 6140 4377 607 240 112 47 chr1 76335638 76335749 -205857915 + L2 LINE L2 1999 2101 -1213 1454 126 36 5 chr1 76335749 76335971 -205857693 + MER30 DNA MER1_type 1 229 -1 607 240 112 47 chr1 76335971 76336117 -205857547 + L2 LINE L2 2101 2273 -1041 2152 97 0 7 chr1 76336585 76336895 -205856769 - AluSg SINE Alu -2 308 1 1525 178 87 0 chr1 76337274 76337550 -205856114 + AluJb SINE Alu 1 300 -12 5921 131 51 23 chr1 76337621 76338704 -205854960 - L1MC1 LINE L1 -12 6321 5202 422 207 0 0 chr1 76338903 76338985 -205854679 + MER20B DNA MER1_type 506 587 -196 316 261 0 0 chr1 76340105 76340174 -205853490 + MIR SINE MIR 119 187 -75 1091 202 74 4 chr1 76340195 76340438 -205853226 - MIR SINE MIR 0 262 3 263 365 52 0 chr1 76340686 76340782 -205852882 + L2 LINE L2 3136 3236 -36 941 224 40 9 chr1 76342058 76342281 -205851383 + MIR SINE MIR 15 244 -18 252 278 24 71 chr1 76342632 76342758 -205850906 - 7SK RNA RNA -66 127 8 324 333 128 0 chr1 76342805 76342946 -205850718 - MIR SINE MIR -70 192 34 208 271 17 17 chr1 76343013 76343072 -205850592 - L2 LINE L2 -8 3305 3247 2098 103 7 0 chr1 76343350 76343664 -205850000 - AluSq SINE Alu 0 316 1 28 0 0 0 chr1 76344033 76344061 -205849603 + AT_rich Low_complexity Low_complexity 1 28 0 301 361 135 16 chr1 76344270 76344649 -205849015 + L2 LINE L2 1876 2299 -1015 233 264 0 99 chr1 76344654 76344745 -205848919 - L2 LINE L2 0 3313 3232 223 393 32 46 chr1 76344928 76345147 -205848517 + L2 LINE L2 2690 2905 -409 2198 115 7 0 chr1 76345898 76346202 -205847462 - AluSx SINE Alu -6 306 1 611 229 188 28 chr1 76346459 76346677 -205846987 + MIR SINE MIR 6 258 -4 1754 173 10 3 chr1 76347216 76347517 -205846147 - AluJo SINE Alu -9 303 1 923 159 53 6 chr1 76348034 76348204 -205845460 - MER58A DNA MER1_type 0 224 47 370 264 61 0 chr1 76348470 76348581 -205845083 + MIR SINE MIR 61 178 -67 418 123 27 27 chr1 76349711 76349784 -205843880 - MADE1 DNA Mariner 0 80 8 22 56 0 0 chr1 76349798 76349834 -205843830 + AT_rich Low_complexity Low_complexity 1 36 0 1206 68 0 0 chr1 76349883 76350030 -205843634 + AluY SINE Alu 149 295 -16 783 131 0 51 chr1 76350041 76350178 -205843486 + FLAM_A SINE Alu 1 130 -3 664 311 126 46 chr1 76350393 76351056 -205842608 - L2 LINE L2 -214 3058 2338 306 277 210 52 chr1 76351058 76351534 -205842130 - L2 LINE L2 -1518 1796 1246 180 0 0 0 chr1 76351834 76351854 -205841810 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 76351924 76351946 -205841718 + AT_rich Low_complexity Low_complexity 1 22 0 2267 110 0 0 chr1 76352395 76352695 -205840969 - AluSg SINE Alu -10 300 1 2217 107 0 0 chr1 76352778 76353076 -205840588 + AluSx SINE Alu 6 303 -9 1678 173 3 7 chr1 76356978 76357273 -205836391 - AluJb SINE Alu -18 294 1 1030 140 4 2 chr1 76357991 76358228 -205835436 + AluJb SINE Alu 2 293 -19 21 0 0 0 chr1 76358345 76358366 -205835298 + AT_rich Low_complexity Low_complexity 1 21 0 350 340 38 0 chr1 76358453 76358559 -205835105 - L2 LINE L2 0 3313 3204 304 283 283 0 chr1 76358607 76358794 -205834870 - L1ME4a LINE L1 0 6121 5882 340 300 112 6 chr1 76359166 76359336 -205834328 + L1ME4a LINE L1 5730 5917 -204 2075 92 0 83 chr1 76360098 76360425 -205833239 - AluSx SINE Alu -12 300 1 305 255 14 103 chr1 76360558 76360623 -205833041 - L2 LINE L2 -497 2817 2770 1655 154 79 4 chr1 76360623 76360903 -205832761 + AluJb SINE Alu 1 301 -11 305 255 14 103 chr1 76360903 76360982 -205832682 - L2 LINE L2 -544 2770 2686 630 265 330 13 chr1 76361048 76361523 -205832141 - L2 LINE L2 -801 2513 1888 432 290 53 0 chr1 76361529 76361698 -205831966 + MER104 DNA Tc2 1 178 -2 195 255 0 0 chr1 76361707 76361754 -205831910 - L2 LINE L2 -1445 1869 1823 960 186 55 14 chr1 76361792 76362012 -205831652 - AluJo SINE Alu -2 310 82 383 253 127 25 chr1 76362304 76362462 -205831202 + MIR3 SINE MIR 34 207 -1 213 132 0 0 chr1 76362964 76363002 -205830662 + (TA)n Simple_repeat Simple_repeat 2 39 0 1368 154 9 118 chr1 76363108 76363446 -205830218 - AluJo SINE Alu -1 301 1 186 189 0 0 chr1 76363908 76363945 -205829719 + CT-rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr1 76365163 76365183 -205828481 + (TA)n Simple_repeat Simple_repeat 2 21 0 2072 95 7 17 chr1 76365183 76365479 -205828185 - AluSx SINE Alu -19 293 1 34 0 0 0 chr1 76367240 76367274 -205826390 + AT_rich Low_complexity Low_complexity 1 34 0 614 195 17 8 chr1 76367570 76367688 -205825976 + MER58B DNA MER1_type 198 316 -25 387 279 77 74 chr1 76369566 76369865 -205823799 + L3b LINE CR1 1201 1575 -8 436 246 55 18 chr1 76370541 76370651 -205823013 - L2 LINE L2 -5 3308 3195 1851 102 74 25 chr1 76373604 76373889 -205819775 + AluSx SINE Alu 1 299 -13 767 250 198 9 chr1 76376551 76376895 -205816769 - L1ME4a LINE L1 -17 6104 5696 432 275 191 0 chr1 76376942 76377073 -205816591 - MER5A DNA MER1_type -3 186 31 513 310 170 45 chr1 76377668 76377922 -205815742 + L2 LINE L2 1542 1763 -1551 1918 83 0 26 chr1 76377922 76378187 -205815477 + AluY SINE Alu 34 291 -20 513 310 170 45 chr1 76378187 76378774 -205814890 + L2 LINE L2 1763 2488 -826 273 344 136 60 chr1 76379060 76379429 -205814235 + L2 LINE L2 2836 3232 -40 22 0 0 0 chr1 76379594 76379616 -205814048 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr1 76381953 76381996 -205811668 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 315 163 11 chr1 76383058 76383150 -205810514 + MIR3 SINE MIR 93 198 -10 749 192 0 0 chr1 76389269 76389394 -205804270 - FLAM_A SINE Alu -8 125 1 1641 155 96 19 chr1 76394030 76394353 -205799311 + MER7A DNA MER2_type 1 346 0 578 230 130 7 chr1 76394751 76394929 -205798735 - L1ME3A LINE L1 0 6166 5977 1623 156 18 0 chr1 76395579 76395854 -205797810 - AluJb SINE Alu -32 280 1 264 313 239 10 chr1 76396055 76396256 -205797408 - MIR SINE MIR -2 260 14 450 194 61 10 chr1 76396306 76396404 -205797260 - MER5B DNA MER1_type -55 123 21 227 236 330 0 chr1 76396443 76396549 -205797115 + MER5A DNA MER1_type 48 188 -1 1937 144 3 0 chr1 76396907 76397199 -205796465 - AluSx SINE Alu -19 293 1 2057 141 0 0 chr1 76397281 76397593 -205796071 - AluSx SINE Alu 0 312 1 2080 112 7 0 chr1 76397595 76397889 -205795775 - AluSx SINE Alu -16 296 1 686 145 110 14 chr1 76398072 76398217 -205795447 + MER5A DNA MER1_type 3 161 -28 586 178 9 19 chr1 76398230 76398337 -205795327 - FLAM_A SINE Alu -21 121 16 2139 124 0 0 chr1 76398602 76398909 -205794755 + AluSx SINE Alu 1 307 -5 1835 128 109 32 chr1 76399477 76399789 -205793875 - MER1B DNA MER1_type -3 336 1 202 225 70 84 chr1 76399836 76399907 -205793757 - MIR SINE MIR -67 195 126 738 209 34 14 chr1 76399950 76400098 -205793566 + MER5A DNA MER1_type 39 189 0 359 297 10 0 chr1 76400375 76400489 -205793175 + MIR SINE MIR 35 148 -62 246 275 25 25 chr1 76400516 76400596 -205793068 - MIR SINE MIR 0 262 183 186 103 0 0 chr1 76400642 76400671 -205792993 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 884 98 0 8 chr1 76400672 76400794 -205792870 - AluSq/x SINE Alu -180 133 13 1505 103 24 0 chr1 76400813 76401026 -205792638 - AluSg/x SINE Alu 0 312 95 386 137 5 0 chr1 76401026 76401084 -205792580 - Alu SINE Alu -248 52 3 22 0 0 0 chr1 76401251 76401273 -205792391 + AT_rich Low_complexity Low_complexity 1 22 0 1963 103 33 0 chr1 76401592 76401865 -205791799 + AluSg SINE Alu 15 296 -14 311 277 50 40 chr1 76402076 76402177 -205791487 + L2 LINE L2 3168 3269 -3 219 216 157 0 chr1 76402757 76402808 -205790856 - L3b LINE CR1 -27 1556 1498 201 102 82 20 chr1 76403480 76403529 -205790135 + (CTAAT)n Simple_repeat Simple_repeat 2 53 0 321 296 61 23 chr1 76403592 76403724 -205789940 + MER5B DNA MER1_type 8 144 -34 603 275 99 9 chr1 76403774 76404098 -205789566 + L1MC4 LINE L1 7690 8042 0 316 285 278 11 chr1 76404183 76404446 -205789218 - L3 LINE CR1 -87 1490 1158 772 185 0 0 chr1 76405439 76405569 -205788095 - FLAM_C SINE Alu -3 130 1 240 217 0 0 chr1 76407122 76407168 -205786496 - MIR3 SINE MIR -25 183 138 1803 152 3 14 chr1 76407194 76407491 -205786173 - AluSx SINE Alu -18 294 1 25 0 0 0 chr1 76408599 76408624 -205785040 + AT_rich Low_complexity Low_complexity 1 25 0 1995 120 0 3 chr1 76408624 76408915 -205784749 - AluSx SINE Alu -22 290 1 1097 170 22 45 chr1 76410101 76410140 -205783524 - L1MB5 LINE L1 0 6174 6136 2232 103 3 0 chr1 76410140 76410442 -205783222 - AluSx SINE Alu -9 303 1 1097 170 22 45 chr1 76410442 76410625 -205783039 - L1MB5 LINE L1 -38 6136 5957 484 217 17 33 chr1 76410717 76410837 -205782827 - L2 LINE L2 0 3272 3155 1251 177 5 1 chr1 76410845 76411082 -205782582 - L1MB7 LINE L1 -233 5935 5700 1991 116 11 0 chr1 76411223 76411507 -205782157 - AluSq SINE Alu -26 287 1 821 170 0 0 chr1 76411666 76411801 -205781863 - AluJo/FRAM SINE Alu -13 299 165 590 149 0 0 chr1 76411801 76411888 -205781776 - AluJ/FLAM SINE Alu -224 88 2 180 277 21 75 chr1 76412340 76412434 -205781230 + MIR SINE MIR 124 212 -50 2103 109 0 0 chr1 76412836 76413129 -205780535 + AluSx SINE Alu 4 296 -16 442 214 20 0 chr1 76413133 76413231 -205780433 - L2 LINE L2 -20 3252 3153 224 342 0 0 chr1 76414000 76414076 -205779588 - MIR SINE MIR -103 105 30 1645 104 5 0 chr1 76414213 76414433 -205779231 + AluSq SINE Alu 1 221 -92 1014 205 41 5 chr1 76414638 76414833 -205778831 + MLT1F LTR MaLR 105 306 -236 513 228 15 127 chr1 76415442 76415639 -205778025 + MER20 DNA MER1_type 44 218 -1 1960 109 0 35 chr1 76417381 76417692 -205775972 - AluSg SINE Alu -10 300 1 247 215 129 21 chr1 76418174 76418267 -205775397 + MIR SINE MIR 36 138 -70 698 246 24 71 chr1 76418350 76418470 -205775194 + MIR SINE MIR 32 139 -123 2332 66 0 41 chr1 76418470 76418790 -205774874 + AluY SINE Alu 1 307 -4 698 246 24 71 chr1 76418790 76418880 -205774784 + MIR SINE MIR 139 232 -30 2101 111 0 7 chr1 76419720 76420018 -205773646 + AluSx SINE Alu 1 296 -16 1300 170 0 4 chr1 76420106 76420335 -205773329 + AluJb SINE Alu 83 310 -2 767 159 0 23 chr1 76420375 76420507 -205773157 + FLAM_A SINE Alu 1 129 -4 786 157 0 22 chr1 76420514 76420648 -205773016 - FLAM_C SINE Alu -6 137 7 2333 45 3 0 chr1 76420700 76420992 -205772672 - AluY SINE Alu -18 293 1 1985 132 0 3 chr1 76422083 76422379 -205771285 - AluSx SINE Alu -17 295 1 217 361 154 48 chr1 76422564 76422772 -205770892 - L2 LINE L2 -1 3271 3042 604 287 92 23 chr1 76422834 76423095 -205770569 - L2 LINE L2 -528 2786 2508 429 106 0 0 chr1 76423846 76423912 -205769752 + L1MA3 LINE L1 6239 6304 -1 26 30 0 0 chr1 76423912 76423945 -205769719 + AT_rich Low_complexity Low_complexity 1 33 0 2212 92 0 3 chr1 76424369 76424664 -205769000 + AluSg SINE Alu 1 294 -16 410 259 38 8 chr1 76424886 76425017 -205768647 - L1ME4a LINE L1 -26 6095 5961 2178 97 3 0 chr1 76425078 76425376 -205768288 + AluSp SINE Alu 1 299 -14 1973 147 0 6 chr1 76426339 76426651 -205767013 + AluJb SINE Alu 3 312 0 21 82 0 0 chr1 76426873 76426922 -205766742 + AT_rich Low_complexity Low_complexity 1 49 0 1336 91 0 0 chr1 76427350 76427526 -205766138 + AluSg/x SINE Alu 131 306 -4 38 61 0 0 chr1 76427601 76427667 -205765997 + AT_rich Low_complexity Low_complexity 1 66 0 253 323 0 77 chr1 76428368 76428498 -205765166 - MIR SINE MIR -123 139 20 352 237 176 0 chr1 76428595 76428726 -205764938 - MER117 DNA MER1_type -33 164 11 496 236 23 75 chr1 76428959 76429133 -205764531 + MER5B DNA MER1_type 11 175 -3 215 294 0 15 chr1 76429577 76429645 -205764019 + GA-rich Low_complexity Low_complexity 1 67 0 990 160 0 18 chr1 76429801 76429970 -205763694 + LTR28 LTR ERV1 1 166 -854 288 217 14 0 chr1 76430008 76430077 -205763587 + LTR1 LTR ERV1 121 190 -595 * 690 145 23 48 chr1 76430044 76430293 -205763371 + LTR27 LTR ERV1 298 634 -2 217 301 82 27 chr1 76430295 76430368 -205763296 + MIR3 SINE MIR 111 187 -21 2318 68 0 19 chr1 76430507 76430814 -205762850 - AluSq SINE Alu -12 301 1 321 343 75 54 chr1 76431281 76431561 -205762103 + L2 LINE L2 2929 3214 -58 422 284 182 17 chr1 76432256 76432552 -205761112 + L2 LINE L2 2550 2894 -420 575 269 57 100 chr1 76432893 76433159 -205760505 + MLT1L LTR MaLR 232 477 -138 1528 173 35 10 chr1 76433159 76433448 -205760216 + AluJo SINE Alu 1 296 -16 575 269 57 100 chr1 76433448 76433582 -205760082 + MLT1L LTR MaLR 477 615 0 381 230 0 40 chr1 76433582 76433656 -205760008 + L2 LINE L2 3197 3267 -5 1798 224 111 38 chr1 76434420 76434969 -205758695 - MLT1E LTR MaLR -4 589 1 330 340 40 0 chr1 76435081 76435181 -205758483 + L2 LINE L2 3114 3217 -55 260 253 35 58 chr1 76435352 76435439 -205758225 + L2 LINE L2 3188 3272 0 1633 117 124 15 chr1 76435517 76435782 -205757882 + AluSg1 SINE Alu 1 294 -15 1588 159 4 0 chr1 76436501 76436752 -205756912 - L1PA16 LINE L1 -22 6144 5893 212 169 225 28 chr1 76436777 76436848 -205756816 + L2 LINE L2 3229 3313 0 292 296 86 91 chr1 76437999 76438125 -205755539 + L3 LINE CR1 241 366 -1211 1651 178 27 7 chr1 76438125 76438417 -205755247 + AluJo SINE Alu 1 298 -14 2198 92 0 3 chr1 76438423 76438878 -205754786 - AluSx SINE Alu 0 454 1 292 296 86 91 chr1 76438878 76438963 -205754701 + L3 LINE CR1 371 459 -1118 892 294 38 22 chr1 76439064 76439377 -205754287 + L3 LINE CR1 687 1004 -573 455 276 126 23 chr1 76440279 76440493 -205753171 - L1MC4a LINE L1 -1963 5845 5610 2245 97 3 3 chr1 76440601 76440899 -205752765 + AluY SINE Alu 1 298 -13 405 231 9 9 chr1 76440902 76441010 -205752654 - MER113 DNA MER1_type? -413 108 1 785 180 53 7 chr1 76441361 76441511 -205752153 + MER45A DNA AcHobo 12 168 -10 407 341 7 18 chr1 76441897 76442080 -205751584 + MIR SINE MIR 9 189 -64 2243 88 7 14 chr1 76442540 76442835 -205750829 - AluSq SINE Alu -20 293 1 194 274 20 0 chr1 76442976 76443027 -205750637 - L2 LINE L2 -669 2645 2594 272 254 206 63 chr1 76444440 76444629 -205749035 - MIR SINE MIR -26 236 21 1789 151 13 28 chr1 76444780 76445097 -205748567 + AluJb SINE Alu 1 312 0 1829 147 0 17 chr1 76445832 76446125 -205747539 + AluJb SINE Alu 23 310 -2 22 0 0 0 chr1 76446736 76446758 -205746906 + AT_rich Low_complexity Low_complexity 1 22 0 2252 118 3 0 chr1 76447040 76447345 -205746319 + AluSx SINE Alu 1 306 -6 738 132 0 0 chr1 76447347 76447453 -205746211 - Tigger7 DNA MER2_type 0 2487 2382 1191 186 8 65 chr1 76447454 76447701 -205745963 - Tigger7 DNA MER2_type -499 234 2 776 211 16 41 chr1 76449760 76449954 -205743710 + MLT1E LTR MaLR 403 591 -2 314 211 14 0 chr1 76450179 76450250 -205743414 + MLT1F1 LTR MaLR 496 567 0 186 306 0 0 chr1 76450275 76450324 -205743340 - L2 LINE L2 0 3272 3224 21 0 0 0 chr1 76450563 76450584 -205743080 + AT_rich Low_complexity Low_complexity 1 21 0 1818 165 3 0 chr1 76450588 76450873 -205742791 - AluJb SINE Alu -24 288 3 556 294 141 28 chr1 76450875 76451293 -205742371 - L2 LINE L2 -190 3082 2610 21 36 0 0 chr1 76451416 76451444 -205742220 + AT_rich Low_complexity Low_complexity 1 28 0 411 264 45 0 chr1 76451600 76451710 -205741954 - MIR SINE MIR -69 193 79 2856 97 58 21 chr1 76452235 76452667 -205740997 + LTR7 LTR ERV1 1 448 -2 17083 98 47 29 chr1 76452669 76456103 -205737561 + HERVH LTR ERV1 1 3004 -4709 885 136 27 0 chr1 76456073 76456220 -205737444 + HERVH LTR ERV1 3140 3290 -4423 * 3421 112 6 2 chr1 76456210 76456710 -205736954 + HERVH LTR ERV1 3492 3993 -3720 4436 139 5 1 chr1 76456712 76457372 -205736292 + HERVH LTR ERV1 4488 5149 -2564 1434 125 19 0 chr1 76457373 76457589 -205736075 + HERVH LTR ERV1 5600 5819 -1894 * 2694 63 45 13 chr1 76457587 76457967 -205735697 + HERVH LTR ERV1 7322 7713 0 2852 89 63 21 chr1 76457968 76458397 -205735267 + LTR7 LTR ERV1 2 448 -2 203 328 0 0 chr1 76458688 76458746 -205734918 - MER91C DNA MER1_type -50 90 33 302 253 105 0 chr1 76458867 76458962 -205734702 - MER117 DNA MER1_type -49 148 44 30 59 0 0 chr1 76459710 76459761 -205733903 + AT_rich Low_complexity Low_complexity 1 51 0 1857 243 68 39 chr1 76459958 76460486 -205733178 + L1MC4a LINE L1 5272 5826 -1982 4394 82 11 11 chr1 76460486 76461038 -205732626 - MER41A LTR ERV1 0 554 3 1857 243 68 39 chr1 76461038 76461181 -205732483 + L1MC4a LINE L1 5826 5963 -1845 2251 99 3 0 chr1 76462767 76463060 -205730604 + AluSx SINE Alu 1 294 -18 2427 32 0 14 chr1 76463251 76463579 -205730085 + AluY SINE Alu 1 324 0 960 172 20 0 chr1 76464590 76464741 -205728923 + FAM SINE Alu 5 158 -17 192 77 0 0 chr1 76465266 76465292 -205728372 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 186 103 0 0 chr1 76466212 76466241 -205727423 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 597 181 16 31 chr1 76466728 76466855 -205726809 - L2 LINE L2 0 3313 3189 2803 29 0 0 chr1 76466917 76467228 -205726436 + AluY SINE Alu 1 311 0 462 284 133 87 chr1 76467480 76468040 -205725624 - L2 LINE L2 -1 3271 2594 450 276 31 8 chr1 76468144 76468271 -205725393 + MIR SINE MIR 116 245 -17 348 235 113 35 chr1 76468328 76468443 -205725221 + MIR SINE MIR 126 249 -13 2281 196 25 2 chr1 76468745 76469194 -205724470 - L1MB4 LINE L1 -9 6171 5713 1480 247 91 16 chr1 76469726 76470250 -205723414 - L2 LINE L2 -264 3049 2490 2386 105 0 0 chr1 76470323 76470629 -205723035 + AluSx SINE Alu 1 306 -6 29 47 0 0 chr1 76470686 76470729 -205722935 + AT_rich Low_complexity Low_complexity 1 43 0 511 232 113 29 chr1 76471290 76471492 -205722172 + L1ME LINE L1 5540 5729 -392 21 0 0 0 chr1 76473940 76473961 -205719703 + AT_rich Low_complexity Low_complexity 1 21 0 416 286 62 6 chr1 76476033 76476194 -205717470 + MIR SINE MIR 20 189 -73 215 328 82 37 chr1 76476301 76476435 -205717229 + L2 LINE L2 3173 3312 -1 184 185 0 0 chr1 76477399 76477426 -205716238 + L2 LINE L2 3263 3289 -24 2186 123 0 10 chr1 76478023 76478331 -205715333 + AluSx SINE Alu 1 305 -7 2267 100 13 0 chr1 76478862 76479162 -205714502 - AluSc SINE Alu -5 304 1 808 310 44 52 chr1 76479944 76480162 -205713502 - L1M4 LINE L1 -2202 3944 3726 1701 181 0 20 chr1 76480162 76480460 -205713204 - AluJb SINE Alu -20 292 1 715 159 8 45 chr1 76480469 76480601 -205713063 - FLAM_C SINE Alu -6 127 1 808 310 44 52 chr1 76480601 76481047 -205712617 - L1M4 LINE L1 -2428 3718 3275 615 300 52 20 chr1 76481235 76481485 -205712179 - MIR SINE MIR -2 260 3 2879 138 74 54 chr1 76481814 76482284 -205711380 - L1MB3 LINE L1 -8 6175 5716 426 20 0 0 chr1 76482284 76482335 -205711329 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2303 78 0 4 chr1 76482335 76482616 -205711048 - AluSc SINE Alu -29 280 1 2879 138 74 54 chr1 76482616 76482649 -205711015 - L1MB3 LINE L1 -467 5716 5685 866 142 0 24 chr1 76482649 76482776 -205710888 - FLAM_C SINE Alu -9 124 1 2879 138 74 54 chr1 76482776 76482848 -205710816 - L1MB3 LINE L1 -498 5685 5586 1075 217 54 0 chr1 76483212 76483452 -205710212 + MIR SINE MIR 9 261 -1 907 163 7 7 chr1 76483462 76483615 -205710049 - AluJb SINE Alu -23 289 137 48 0 0 0 chr1 76483661 76483709 -205709955 + AT_rich Low_complexity Low_complexity 1 48 0 345 237 13 0 chr1 76484735 76484811 -205708853 - MIR3 SINE MIR -11 197 121 25 31 0 0 chr1 76485443 76485475 -205708189 + AT_rich Low_complexity Low_complexity 1 32 0 978 281 8 11 chr1 76488068 76488328 -205705336 + MIR SINE MIR 2 260 -2 1821 180 7 3 chr1 76488843 76489138 -205704526 - AluJb SINE Alu -16 296 1 438 128 263 0 chr1 76489144 76489277 -205704387 - L1ME4a LINE L1 -116 6005 5838 2320 97 0 0 chr1 76489287 76489586 -205704078 + AluY SINE Alu 1 299 -12 29 60 0 0 chr1 76489700 76489750 -205703914 + AT_rich Low_complexity Low_complexity 1 50 0 231 244 35 0 chr1 76489913 76489999 -205703665 - L1M LINE L1 -900 5405 5317 363 319 106 11 chr1 76490007 76490280 -205703384 - L1M4 LINE L1 -846 5300 5002 650 126 71 31 chr1 76494971 76495098 -205698566 + LTR54B LTR ERV1 1 132 -366 1139 140 30 25 chr1 76495139 76495374 -205698290 + MER57A-int LTR ERV1 7302 7537 0 2354 145 16 0 chr1 76495374 76495761 -205697903 + MER57A LTR ERV1 1 393 -10 287 167 100 0 chr1 76495766 76495856 -205697808 - MER5C DNA MER1_type -62 262 164 1214 132 19 105 chr1 76496052 76496321 -205697343 - L1MCa LINE L1 -1455 4971 4733 6134 21 0 0 chr1 76496321 76497024 -205696640 - L1PA4 LINE L1 -6 6149 5447 1214 132 19 105 chr1 76497024 76497079 -205696585 - L1MCa LINE L1 -1693 4733 4675 42662 35 1 2 chr1 76497093 76503249 -205690415 + L1PA3 LINE L1 1 6152 -3 496 166 185 7 chr1 76503260 76503411 -205690253 - L1M4 LINE L1 -1759 4387 4210 515 243 59 52 chr1 76503467 76503603 -205690061 - MIR SINE MIR -106 156 20 9741 187 58 54 chr1 76503749 76505020 -205688644 - L1MCa LINE L1 -1833 4593 3329 2539 65 3 0 chr1 76505020 76505328 -205688336 - AluSp SINE Alu -2 311 3 9741 187 58 54 chr1 76505328 76505537 -205688127 - L1MCa LINE L1 -3097 3329 3122 715 170 0 57 chr1 76505537 76505678 -205687986 - FLAM_C SINE Alu -9 134 2 9741 187 58 54 chr1 76505678 76506341 -205687323 - L1MCa LINE L1 -3304 3122 2463 2344 97 0 3 chr1 76506341 76506651 -205687013 - AluSp SINE Alu -4 309 1 9741 187 58 54 chr1 76506651 76507029 -205686635 - L1MCa LINE L1 -3963 2463 2088 246 32 0 0 chr1 76507029 76507060 -205686604 + (TG)n Simple_repeat Simple_repeat 2 32 0 9741 187 58 54 chr1 76507060 76507484 -205686180 - L1MCa LINE L1 -4338 2088 1667 207 0 0 0 chr1 76507484 76507507 -205686157 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 668 165 0 55 chr1 76507507 76507634 -205686030 - FLAM_C SINE Alu -12 121 2 9741 187 58 54 chr1 76507634 76507957 -205685707 - L1MCa LINE L1 -4759 1667 1347 2258 70 0 24 chr1 76507957 76508244 -205685420 - AluSc SINE Alu -6 303 24 9741 187 58 54 chr1 76508244 76508698 -205684966 - L1MCa LINE L1 -5079 1347 896 2218 102 46 40 chr1 76508698 76509071 -205684593 - THE1C LTR MaLR 0 375 1 9741 187 58 54 chr1 76509071 76509820 -205683844 - L1MCa LINE L1 -5530 896 32 1793 168 24 0 chr1 76509818 76509925 -205683739 - L1ME1 LINE L1 -341 5825 5722 * 2249 133 19 24 chr1 76509925 76510301 -205683363 - THE1C LTR MaLR -1 374 1 1793 168 24 0 chr1 76510301 76510532 -205683132 - L1ME1 LINE L1 -444 5722 5479 368 261 150 50 chr1 76510854 76510953 -205682711 - L1MDa LINE L1 -4718 1411 1323 2467 92 0 0 chr1 76510953 76511258 -205682406 - AluSx SINE Alu -7 305 1 368 261 150 50 chr1 76511258 76511338 -205682326 - L1MDa LINE L1 -4806 1323 1214 293 301 19 57 chr1 76511440 76511702 -205681962 - L1MDa LINE L1 -4971 1148 897 644 314 138 39 chr1 76511719 76511911 -205681753 - L1MDa LINE L1 -5300 819 648 1216 65 0 0 chr1 76511911 76512065 -205681599 - L1PA11 LINE L1 -2 6172 6019 466 259 127 0 chr1 76512070 76512228 -205681436 + MER5B DNA MER1_type 1 178 0 644 314 138 39 chr1 76512228 76512701 -205680963 - L1MDa LINE L1 -5474 645 81 387 173 0 0 chr1 76514339 76514420 -205679244 + CT-rich Low_complexity Low_complexity 4 84 0 948 322 75 48 chr1 76514531 76514805 -205678859 - L3 LINE CR1 -2 1575 1310 319 210 111 134 chr1 76514805 76514889 -205678775 - MER112 DNA MER1_type 0 256 172 1701 201 13 3 chr1 76514889 76515197 -205678467 + AluJb SINE Alu 1 311 -1 319 210 111 134 chr1 76515197 76515374 -205678290 - MER112 DNA MER1_type -84 172 1 948 322 75 48 chr1 76515374 76515686 -205677978 - L3 LINE CR1 -267 1310 973 559 202 77 117 chr1 76515741 76515989 -205677675 + MIR SINE MIR 10 247 -15 439 223 32 0 chr1 76516081 76516175 -205677489 - MER94 DNA DNA 0 134 38 309 299 52 0 chr1 76516469 76516566 -205677098 - L3 LINE CR1 -784 793 692 256 245 245 20 chr1 76516751 76516898 -205676766 - MIR SINE MIR -44 218 39 464 122 14 0 chr1 76517630 76517704 -205675960 - AluJ/FRAM SINE Alu -14 298 224 28410 107 65 9 chr1 76518267 76524069 -205669595 - L1PA7 LINE L1 -4 6150 13 201 263 70 18 chr1 76625537 76625594 -205568070 + MIR3 SINE MIR 96 155 -53 328 233 68 0 chr1 76626652 76626725 -205566939 + L2 LINE L2 3195 3272 0 333 200 30 20 chr1 76627831 76627931 -205565733 + L1ME4a LINE L1 5962 6062 -59 338 267 98 56 chr1 76628685 76628891 -205564773 - MIR SINE MIR -50 212 2 951 95 16 0 chr1 76629104 76629230 -205564434 - BC200 scRNA scRNA -71 129 2 957 175 103 0 chr1 76629825 76630019 -205563645 - MER46A DNA MER2_type -1 235 22 349 207 189 18 chr1 76630026 76630137 -205563527 + MIR SINE MIR 76 205 -57 1649 143 156 3 chr1 76630242 76630556 -205563108 - MLT1A1 LTR MaLR -1 364 3 2036 86 0 0 chr1 76631227 76631484 -205562180 - AluSc SINE Alu -18 291 35 918 195 0 13 chr1 76631835 76631989 -205561675 - AluJb SINE Alu -160 152 1 183 227 23 0 chr1 76632033 76632077 -205561587 + L2 LINE L2 3228 3272 0 23 68 0 0 chr1 76632228 76632272 -205561392 + AT_rich Low_complexity Low_complexity 1 44 0 5229 131 24 7 chr1 76632480 76633421 -205560243 + L1PA16 LINE L1 5195 6147 -19 763 184 128 46 chr1 76633653 76633849 -205559815 - MER46A DNA MER2_type -1 235 24 2548 130 123 18 chr1 76633854 76634360 -205559304 + LTR49 LTR ERV1 1 559 -36 6286 137 72 70 chr1 76634361 76634569 -205559095 + LTR49-int LTR ERV1 1 207 -6124 1632 198 0 7 chr1 76634569 76634862 -205558802 - AluJb SINE Alu -17 295 5 6286 137 72 70 chr1 76634862 76636340 -205557324 + LTR49-int LTR ERV1 207 1768 -4563 1734 168 17 28 chr1 76636346 76636637 -205557027 + AluJb SINE Alu 1 288 -24 715 189 14 21 chr1 76636642 76636785 -205556879 + LTR49-int LTR ERV1 1849 1990 -4341 9522 172 62 31 chr1 76636881 76638471 -205555193 + LTR49-int LTR ERV1 2204 3743 -2588 2009 152 3 0 chr1 76638471 76638768 -205554896 - AluSx SINE Alu -12 300 3 9522 172 62 31 chr1 76638768 76641018 -205552646 + LTR49-int LTR ERV1 3743 6269 -62 327 98 0 0 chr1 76641060 76641111 -205552553 + MER4D LTR ERV1 284 334 -538 416 319 21 21 chr1 76641617 76641758 -205551906 - MER5A DNA MER1_type -6 183 43 234 366 22 30 chr1 76641642 76641776 -205551888 + MER5A DNA MER1_type 43 175 -14 * 185 200 0 100 chr1 76642012 76642062 -205551602 - L2 LINE L2 -69 3244 3200 253 349 0 12 chr1 76644240 76644326 -205549338 + MIR SINE MIR 35 119 -143 420 77 0 0 chr1 76644776 76644841 -205548823 + (CA)n Simple_repeat Simple_repeat 2 66 0 247 363 163 45 chr1 76645382 76645757 -205547907 + L2 LINE L2 2819 3237 -35 7464 221 63 55 chr1 76645768 76646568 -205547096 - L1ME1 LINE L1 -2 6233 5441 2161 100 17 20 chr1 76646568 76646868 -205546796 - AluSx SINE Alu -13 299 1 7464 221 63 55 chr1 76646868 76647025 -205546639 - L1ME1 LINE L1 -794 5441 5287 2334 96 0 3 chr1 76647025 76647327 -205546337 - AluSx SINE Alu -11 301 1 7464 221 63 55 chr1 76647327 76647532 -205546132 - L1ME1 LINE L1 -948 5287 5085 2464 152 8 80 chr1 76647532 76647836 -205545828 - MLT1C LTR MaLR -3 464 208 1573 202 3 14 chr1 76647836 76648123 -205545541 - AluJo SINE Alu -22 290 7 2464 152 8 80 chr1 76648123 76648318 -205545346 - MLT1C LTR MaLR -259 208 1 7464 221 63 55 chr1 76648318 76649788 -205543876 - L1ME1 LINE L1 -1150 5085 3629 2302 88 71 3 chr1 76649788 76650139 -205543525 - THE1C LTR MaLR 0 375 1 7464 221 63 55 chr1 76650139 76650526 -205543138 - L1ME1 LINE L1 -2606 3629 3247 623 225 8 8 chr1 76650526 76650655 -205543009 - FLAM_C SINE Alu -3 130 2 7464 221 63 55 chr1 76650655 76650807 -205542857 - L1ME1 LINE L1 -2988 3247 3098 1829 163 0 33 chr1 76650807 76651113 -205542551 - AluSx SINE Alu -16 296 1 7464 221 63 55 chr1 76651113 76651681 -205541983 - L1ME1 LINE L1 -3137 3098 2453 535 225 95 26 chr1 76651784 76652015 -205541649 - L1ME1 LINE L1 -5162 1234 988 345 260 32 16 chr1 76652028 76652151 -205541513 - L1ME1 LINE L1 -6234 162 38 287 362 0 38 chr1 76652348 76652453 -205541211 + L2 LINE L2 3171 3271 -1 208 321 37 12 chr1 76652585 76652666 -205540998 + L2 LINE L2 3193 3275 -38 336 250 96 37 chr1 76653503 76653639 -205540025 + MIR SINE MIR 110 253 -9 21 57 0 0 chr1 76653647 76653682 -205539982 + AT_rich Low_complexity Low_complexity 1 35 0 196 222 0 0 chr1 76654504 76654540 -205539124 - L2 LINE L2 -12 3301 3266 * 230 265 0 0 chr1 76654536 76654585 -205539079 - MIR SINE MIR -142 120 72 226 319 104 14 chr1 76654708 76654852 -205538812 + MIR SINE MIR 36 192 -70 27 49 0 0 chr1 76655363 76655404 -205538260 + AT_rich Low_complexity Low_complexity 1 41 0 14753 148 38 40 chr1 76655404 76655480 -205538184 - L1MA3 LINE L1 -18 7706 7631 2239 104 0 0 chr1 76655480 76655767 -205537897 + AluSp SINE Alu 1 287 -26 14753 148 38 40 chr1 76655767 76658209 -205535455 - L1MA3 LINE L1 -93 7631 5188 221 83 28 0 chr1 76658209 76658245 -205535419 + (TG)n Simple_repeat Simple_repeat 2 38 0 14753 148 38 40 chr1 76658245 76660343 -205533321 - L1MA3 LINE L1 -2536 5188 3087 33 25 0 0 chr1 76660356 76660396 -205533268 + AT_rich Low_complexity Low_complexity 1 40 0 515 303 20 0 chr1 76660502 76660654 -205533010 + MER117 DNA MER1_type 1 155 -42 237 351 0 0 chr1 76661187 76661261 -205532403 - MIR3 SINE MIR -40 168 95 246 32 0 0 chr1 76661916 76661947 -205531717 + (CA)n Simple_repeat Simple_repeat 2 32 0 549 257 148 11 chr1 76662424 76662575 -205531089 - L1MC4a LINE L1 -1668 6140 6011 261 83 0 0 chr1 76662575 76662611 -205531053 + (TG)n Simple_repeat Simple_repeat 1 36 0 549 257 148 11 chr1 76662611 76662743 -205530921 - L1MC4a LINE L1 -1797 6011 5818 263 341 52 30 chr1 76662932 76663067 -205530597 - MIR3 SINE MIR -63 145 8 1829 148 20 14 chr1 76663077 76663374 -205530290 - AluJb SINE Alu -13 299 1 357 236 0 0 chr1 76663527 76663599 -205530065 + MIR3 SINE MIR 109 180 -28 234 322 39 72 chr1 76663704 76663884 -205529780 + L2 LINE L2 2852 3025 -288 637 312 107 5 chr1 76664026 76664241 -205529423 + MIR SINE MIR 20 256 -6 225 65 0 0 chr1 76665719 76665750 -205527914 + (CA)n Simple_repeat Simple_repeat 2 32 0 1786 151 0 39 chr1 76665863 76665997 -205527667 + AluJb SINE Alu 1 139 -173 2207 97 13 7 chr1 76665997 76666296 -205527368 + AluSx SINE Alu 1 301 -11 1786 151 0 39 chr1 76666296 76666473 -205527191 + AluJb SINE Alu 139 300 -12 1012 162 0 23 chr1 76666473 76666646 -205527018 + FRAM SINE Alu 1 166 -10 2044 136 10 0 chr1 76667135 76667430 -205526234 + AluSx SINE Alu 1 298 -14 564 263 100 23 chr1 76667474 76667775 -205525889 + L1ME4a LINE L1 5787 6110 -11 289 114 0 0 chr1 76667915 76667959 -205525705 + MER41A LTR ERV1 400 443 -111 660 226 111 6 chr1 76668770 76668951 -205524713 - MER3 DNA MER1_type -9 200 1 2446 70 0 0 chr1 76672094 76672393 -205521271 + AluY SINE Alu 1 299 -12 671 284 83 10 chr1 76672415 76672619 -205521045 + MIR SINE MIR 25 243 -19 250 185 15 0 chr1 76676823 76676888 -205516776 + (CCG)n Simple_repeat Simple_repeat 2 67 0 203 171 0 0 chr1 76678219 76678260 -205515404 + T-rich Low_complexity Low_complexity 2 42 0 1709 164 31 3 chr1 76678267 76678554 -205515110 + AluJo SINE Alu 3 297 -15 2134 166 2 13 chr1 76678554 76678951 -205514713 - L1MB3 LINE L1 -9 6174 5782 1323 170 56 43 chr1 76679367 76679718 -205513946 - MLT1A1 LTR MaLR -7 421 1 969 147 0 6 chr1 76680064 76680220 -205513444 + MIR SINE MIR 64 218 -44 318 222 102 74 chr1 76680271 76680596 -205513068 - L1MC4a LINE L1 -1921 5887 5520 212 339 80 22 chr1 76681661 76681885 -205511779 - MIR SINE MIR -13 249 13 1330 279 70 32 chr1 76682252 76682837 -205510827 + L2 LINE L2 1830 2436 -878 2037 280 57 47 chr1 76682862 76683606 -205510058 - ERVL LTR ERVL -2943 2821 2071 271 130 0 22 chr1 76683612 76683658 -205510006 + MLT1A1 LTR MaLR 3 47 -318 1842 228 13 51 chr1 76683672 76684202 -205509462 - MER65B LTR ERV1 -21 510 1 1781 193 19 0 chr1 76684206 76684517 -205509147 + MLT1A1 LTR MaLR 48 364 -1 2292 328 40 27 chr1 76684518 76685679 -205507985 - ERVL LTR ERVL -3694 2070 895 300 354 75 39 chr1 76685723 76686056 -205507608 - ERVL LTR ERVL -5068 696 352 1783 216 129 62 chr1 76686349 76687094 -205506570 - LTR50 LTR ERVL 0 795 1 1981 147 3 0 chr1 76687323 76687616 -205506048 + AluSg SINE Alu 1 294 -16 225 333 68 56 chr1 76687643 76687877 -205505787 + L2 LINE L2 2825 3061 -211 33 0 0 0 chr1 76688070 76688103 -205505561 + AT_rich Low_complexity Low_complexity 1 33 0 1657 244 70 18 chr1 76688152 76688652 -205505012 + L2 LINE L2 2376 2901 -413 263 240 150 10 chr1 76688721 76688821 -205504843 - LTR50 LTR ERVL -466 329 216 458 242 5 162 chr1 76688837 76689035 -205504629 + L2 LINE L2 2883 3049 -264 2165 224 32 2 chr1 76689036 76689629 -205504035 + L1ME LINE L1 4464 5074 -1072 2533 106 13 21 chr1 76689665 76690043 -205503621 + THE1C LTR MaLR 1 375 0 10104 108 46 14 chr1 76690043 76691575 -205502089 + THE1C-int LTR MaLR 1 1580 0 2588 98 10 44 chr1 76691575 76691763 -205501901 + THE1C LTR MaLR 1 171 -204 2552 84 0 0 chr1 76691763 76692074 -205501590 - AluY SINE Alu 0 311 1 2588 98 10 44 chr1 76692074 76692273 -205501391 + THE1C LTR MaLR 171 375 0 3335 168 42 23 chr1 76692273 76692750 -205500914 - L1MB1 LINE L1 -195 5797 5283 2231 125 0 3 chr1 76692750 76693061 -205500603 - AluY SINE Alu -1 310 1 3335 168 42 23 chr1 76693061 76693488 -205500176 - L1MB1 LINE L1 -709 5283 4866 1437 202 40 65 chr1 76693488 76693983 -205499681 - L1MB1 LINE L1 -3523 2447 1980 1678 151 12 0 chr1 76693983 76694235 -205499429 + AluSq SINE Alu 29 283 -30 1437 202 40 65 chr1 76694235 76694590 -205499074 - L1MB1 LINE L1 -3990 1980 1618 1768 265 95 18 chr1 76694710 76694847 -205498817 - L1MB1 LINE L1 -4516 1375 1250 732 196 5 103 chr1 76694847 76695041 -205498623 - FAM SINE Alu 0 175 1 1768 265 95 18 chr1 76695041 76695271 -205498393 - L1MB1 LINE L1 -4641 1250 1039 2909 114 2 9 chr1 76695271 76695708 -205497956 - MER57B LTR ERV1 0 434 1 1768 265 95 18 chr1 76695708 76695828 -205497836 - L1MB1 LINE L1 -4852 1039 930 189 0 0 0 chr1 76695828 76695849 -205497815 + (TC)n Simple_repeat Simple_repeat 1 21 0 1768 265 95 18 chr1 76695849 76696400 -205497264 - L1MB1 LINE L1 -4961 930 502 288 324 16 71 chr1 76696532 76696714 -205496950 - L1MB1 LINE L1 -5200 691 520 1000 313 47 45 chr1 76696776 76697411 -205496253 - L1MB1 LINE L1 -5213 678 4 1039 199 34 7 chr1 76697421 76697794 -205495870 + L1ME LINE L1 5084 5462 -704 419 159 23 23 chr1 76697794 76697882 -205495782 + MLT1F1 LTR MaLR 16 103 -464 1976 191 47 0 chr1 76697903 76698311 -205495353 + L1MD3 LINE L1 7395 7821 -174 365 260 113 7 chr1 76698333 76698483 -205495181 + L2 LINE L2 3046 3211 -102 3209 264 80 17 chr1 76698484 76698808 -205494856 - MER69B DNA AcHobo -1301 1225 923 1888 126 0 44 chr1 76698808 76699133 -205494531 - AluSx SINE Alu 0 312 1 3209 264 80 17 chr1 76699133 76699941 -205493723 - MER69B DNA AcHobo -1603 923 20 400 287 28 9 chr1 76699951 76700059 -205493605 + L2 LINE L2 3204 3313 0 215 186 0 17 chr1 76700076 76700135 -205493529 + GA-rich Low_complexity Low_complexity 4 61 0 303 337 20 0 chr1 76701049 76701147 -205492517 + L2 LINE L2 3203 3302 -11 250 352 55 16 chr1 76701241 76701369 -205492295 - MIR SINE MIR -57 151 19 716 193 12 56 chr1 76701756 76701939 -205491725 - AluJ SINE Alu 0 304 129 279 0 0 0 chr1 76701942 76701973 -205491691 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 41021 29 22 3 chr1 76701973 76707997 -205485667 - L1HS LINE L1 -10 6145 3 680 152 15 38 chr1 76708003 76708135 -205485529 - AluJ SINE Alu -173 129 1 281 196 134 21 chr1 76708202 76708299 -205485365 - MER3 DNA MER1_type -95 114 7 265 254 60 15 chr1 76708961 76709095 -205484569 + LTR37B LTR ERV1 9 148 -320 661 187 65 141 chr1 76709104 76709444 -205484220 + LTR37B LTR ERV1 111 466 -2 289 302 47 19 chr1 76709545 76709651 -205484013 + LTR33 LTR ERVL 107 215 -306 282 306 27 27 chr1 76709832 76709943 -205483721 + L3 LINE CR1 1404 1514 -63 231 114 0 0 chr1 76710017 76710052 -205483612 + (TG)n Simple_repeat Simple_repeat 2 36 0 5433 112 2 9 chr1 76710220 76711005 -205482659 + LTR17 LTR ERV1 1 780 0 2405 88 7 10 chr1 76711320 76711626 -205482038 - AluSx SINE Alu -1 311 7 182 356 27 0 chr1 76711787 76711860 -205481804 - L2 LINE L2 -29 3243 3169 773 236 94 38 chr1 76712899 76713306 -205480358 - MER57A LTR ERV1 0 403 1 1780 121 86 14 chr1 76713942 76714232 -205479432 + AluSx SINE Alu 1 311 -1 234 258 81 73 chr1 76714310 76714434 -205479230 - MIR SINE MIR -45 217 93 321 267 27 0 chr1 76717171 76717246 -205476418 + L2 LINE L2 3232 3308 -5 660 316 98 28 chr1 76717423 76717853 -205475811 + LTR67 LTR ERVL 56 515 -42 636 242 0 0 chr1 76717895 76718015 -205475649 - FLAM_A SINE Alu -13 120 1 308 259 0 0 chr1 76719503 76719561 -205474103 + L2 LINE L2 3210 3267 -5 236 203 0 54 chr1 76720144 76720162 -205473502 + (CAAA)n Simple_repeat Simple_repeat 3 20 -52 714 191 0 8 chr1 76720162 76720293 -205473371 + FLAM_A SINE Alu 4 133 0 236 203 0 54 chr1 76720293 76720348 -205473316 + (CAAA)n Simple_repeat Simple_repeat 20 72 0 1118 295 95 29 chr1 76720428 76720993 -205472671 - L2 LINE L2 -251 3062 2470 2008 138 6 22 chr1 76721321 76721632 -205472032 + AluSx SINE Alu 2 307 -5 235 91 0 0 chr1 76721791 76721824 -205471840 + HsTC2 DNA Tc2 1865 1897 -1 510 315 121 56 chr1 76721841 76722309 -205471355 + L1MEd LINE L1 851 1444 -1046 234 301 32 16 chr1 76722370 76722493 -205471171 + HAL1 LINE L1 1529 1653 -854 2109 120 14 0 chr1 76722579 76722870 -205470794 + AluSq SINE Alu 1 295 -18 576 224 36 30 chr1 76723100 76723265 -205470399 - L1ME1 LINE L1 0 6166 6001 351 0 0 0 chr1 76724531 76724570 -205469094 + (TG)n Simple_repeat Simple_repeat 1 39 0 324 316 59 40 chr1 76725013 76725165 -205468499 + MLT1L LTR MaLR 1 155 -460 379 266 0 9 chr1 76725166 76725279 -205468385 - MER112 DNA MER1_type -8 252 141 378 0 0 0 chr1 76725389 76725431 -205468233 + (TG)n Simple_repeat Simple_repeat 2 43 0 448 272 18 18 chr1 76725853 76726022 -205467642 + MLT1L LTR MaLR 441 609 -6 2186 122 3 0 chr1 76728126 76728430 -205465234 + AluSx SINE Alu 1 305 -7 2096 241 88 84 chr1 76728634 76728708 -205464956 + L1ME LINE L1 161 233 -5985 366 115 0 0 chr1 76728708 76728769 -205464895 + (CA)n Simple_repeat Simple_repeat 2 62 0 2096 241 88 84 chr1 76728769 76729446 -205464218 + L1ME LINE L1 233 920 -5298 1988 132 3 39 chr1 76729446 76729756 -205463908 + AluSx SINE Alu 1 299 -13 2096 241 88 84 chr1 76729756 76730059 -205463605 + L1ME LINE L1 920 1220 -4998 1279 262 58 25 chr1 76730079 76730683 -205462981 + L1ME LINE L1 1843 2466 -3930 1871 83 0 4 chr1 76730688 76730928 -205462736 + AluSp SINE Alu 1 239 -74 2051 171 25 0 chr1 76731211 76731567 -205462097 - MLT1A1 LTR MaLR 0 365 1 1695 132 16 0 chr1 76731590 76731833 -205461831 + AluSx SINE Alu 60 306 -6 1800 82 61 14 chr1 76731835 76732128 -205461536 + L1P5 LINE L1 5301 5607 -544 2540 45 7 3 chr1 76732128 76732438 -205461226 + AluY SINE Alu 1 311 0 443 201 250 16 chr1 76732695 76732879 -205460785 + MIR SINE MIR 36 262 0 25 0 0 0 chr1 76733123 76733148 -205460516 + AT_rich Low_complexity Low_complexity 1 25 0 316 247 47 53 chr1 76733503 76733653 -205460011 + HAL1 LINE L1 2276 2424 -83 26 30 0 0 chr1 76733722 76733755 -205459909 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr1 76733903 76733932 -205459732 + AT_rich Low_complexity Low_complexity 1 29 0 35 24 0 0 chr1 76733993 76734035 -205459629 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 76734326 76734351 -205459313 + AT_rich Low_complexity Low_complexity 1 25 0 413 289 91 29 chr1 76735144 76735386 -205458278 + MIR SINE MIR 3 259 -3 360 289 153 73 chr1 76735395 76735507 -205458157 - L2 LINE L2 -34 3279 3177 1858 148 10 23 chr1 76735507 76735810 -205457854 + AluJb SINE Alu 7 305 -7 360 289 153 73 chr1 76735810 76736063 -205457601 - L2 LINE L2 -136 3177 2946 2181 128 0 0 chr1 76736063 76736359 -205457305 - AluSx SINE Alu -14 298 3 360 289 153 73 chr1 76736359 76736439 -205457225 - L2 LINE L2 -367 2946 2874 2167 137 3 0 chr1 76736439 76736746 -205456918 - AluSp SINE Alu -5 308 1 360 289 153 73 chr1 76736746 76736840 -205456824 - L2 LINE L2 -439 2874 2690 367 304 19 75 chr1 76737355 76737516 -205456148 + L1MEd LINE L1 595 746 -5373 205 337 50 10 chr1 76737517 76737618 -205456046 - L2 LINE L2 -1497 1817 1713 2255 85 3 3 chr1 76737760 76738053 -205455611 - AluSx SINE Alu -15 297 5 37 62 0 0 chr1 76738553 76738618 -205455046 + AT_rich Low_complexity Low_complexity 1 65 0 1445 284 98 30 chr1 76739030 76739672 -205453992 + L2 LINE L2 2100 2785 -529 905 264 76 63 chr1 76739832 76740215 -205453449 + L2 LINE L2 2919 3306 -7 2314 104 0 0 chr1 76740222 76740519 -205453145 + AluSx SINE Alu 1 297 -15 304 282 139 37 chr1 76740549 76740794 -205452870 - L1 LINE L1 -1856 4290 4021 359 352 140 0 chr1 76740922 76741101 -205452563 + MIR SINE MIR 20 223 -39 1394 192 29 83 chr1 76741671 76742057 -205451607 + MLT1A1 LTR MaLR 1 365 0 3094 204 18 3 chr1 76742057 76742709 -205450955 + MLT1A1-int LTR MaLR 1 662 -1073 327 149 0 45 chr1 76742763 76742830 -205450834 + MLT1A1-int LTR MaLR 819 882 -489 415 218 54 88 chr1 76742906 76743053 -205450611 + MLT-int LTR MaLR 679 820 -915 2132 225 21 13 chr1 76743074 76743545 -205450119 + MLT1A1-int LTR MaLR 1261 1735 0 1414 179 88 35 chr1 76743547 76743888 -205449776 + MLT1A1 LTR MaLR 3 361 -4 2417 184 69 33 chr1 76744271 76744847 -205448817 + MER63 DNA MER1_type 465 1061 0 2240 98 0 0 chr1 76745130 76745416 -205448248 - AluSq SINE Alu -25 288 3 2268 97 10 13 chr1 76746004 76746314 -205447350 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr1 76746557 76746584 -205447080 + AT_rich Low_complexity Low_complexity 1 27 0 479 179 0 0 chr1 76746800 76746884 -205446780 - LTR40a LTR ERVL 0 519 436 229 262 11 134 chr1 76746894 76747081 -205446583 + L2 LINE L2 2301 2464 -850 595 261 22 0 chr1 76747091 76747225 -205446439 + MIR SINE MIR 4 140 -122 2069 117 0 21 chr1 76747389 76747700 -205445964 - AluSx SINE Alu 0 305 1 430 225 34 22 chr1 76747779 76747868 -205445796 - MIR SINE MIR -169 93 4 25 31 0 0 chr1 76748332 76748364 -205445300 + AT_rich Low_complexity Low_complexity 1 32 0 1795 177 3 3 chr1 76748502 76748796 -205444868 + AluJb SINE Alu 6 299 -13 305 219 0 16 chr1 76749203 76749267 -205444397 + MIR3 SINE MIR 125 187 -21 310 342 8 17 chr1 76749484 76749601 -205444063 + L1MEd LINE L1 980 1095 -5024 636 242 54 14 chr1 76749601 76749824 -205443840 + L1MEc LINE L1 36 267 -6129 496 167 22 0 chr1 76749891 76749981 -205443683 + L1MC/D LINE L1 5623 5714 -645 29 0 0 0 chr1 76750665 76750694 -205442970 + AT_rich Low_complexity Low_complexity 1 29 0 2231 113 0 0 chr1 76750732 76751016 -205442648 - AluSx SINE Alu -28 284 1 286 312 104 8 chr1 76751290 76751415 -205442249 - MIR3 SINE MIR -24 184 48 459 0 0 0 chr1 76751435 76751486 -205442178 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2165 118 10 7 chr1 76751503 76751800 -205441864 + AluSx SINE Alu 1 298 -14 1506 206 0 40 chr1 76752256 76752557 -205441107 + AluJo SINE Alu 2 290 -22 1881 181 81 14 chr1 76752660 76753092 -205440572 + MER65C LTR ERV1 1 461 0 204 179 0 0 chr1 76753606 76753645 -205440019 + (CA)n Simple_repeat Simple_repeat 2 40 0 225 174 22 0 chr1 76753944 76753990 -205439674 + ORSL DNA AcHobo 229 275 0 1916 121 22 63 chr1 76754201 76754516 -205439148 + AluSx SINE Alu 1 302 -10 2163 90 18 0 chr1 76754865 76755142 -205438522 - AluSg SINE Alu -6 304 23 451 152 0 25 chr1 76755226 76755305 -205438359 - FRAM/FAM SINE Alu -100 76 1 2017 122 7 14 chr1 76755320 76755615 -205438049 + AluSx SINE Alu 2 294 -18 1895 194 16 8 chr1 76756619 76757006 -205436658 + MLT1B LTR MaLR 1 390 0 2187 76 10 16 chr1 76757081 76757384 -205436280 - AluSx SINE Alu -11 301 1 189 0 0 0 chr1 76758988 76759009 -205434655 + (A)n Simple_repeat Simple_repeat 1 21 0 1648 155 0 40 chr1 76759147 76759425 -205434239 - AluJo SINE Alu -45 267 1 1112 260 67 41 chr1 76760240 76760675 -205432989 - MER77 LTR ERV1 -6 599 154 542 237 53 20 chr1 76760699 76760851 -205432813 - MER77 LTR ERV1 -393 212 56 379 258 24 60 chr1 76761398 76761565 -205432099 + L2 LINE L2 1892 2052 -1262 295 299 26 8 chr1 76761892 76762009 -205431655 + MLT1K LTR MaLR 131 249 -339 320 300 88 18 chr1 76762117 76762287 -205431377 + MLT1K LTR MaLR 375 556 -32 220 246 79 79 chr1 76762345 76762471 -205431193 + MIR SINE MIR 133 258 -4 2433 120 22 71 chr1 76762705 76762806 -205430858 + MSTC LTR MaLR 1 105 -323 517 244 17 0 chr1 76762806 76762921 -205430743 - FLAM_A SINE Alu -16 117 1 2433 120 22 71 chr1 76762921 76763269 -205430395 + MSTC LTR MaLR 105 428 0 343 288 80 9 chr1 76763632 76763844 -205429820 + L1ME4a LINE L1 5510 5736 -385 427 319 15 7 chr1 76763940 76764075 -205429589 - MIR SINE MIR -116 146 11 302 240 134 53 chr1 76764093 76764376 -205429288 + L1ME4a LINE L1 5773 6078 -43 1520 184 8 4 chr1 76764560 76764827 -205428837 + AluJo SINE Alu 3 270 -42 2995 109 25 2 chr1 76764833 76765309 -205428355 - LTR15 LTR ERV1 -6 487 1 37 23 0 0 chr1 76765338 76765382 -205428282 + AT_rich Low_complexity Low_complexity 1 44 0 2215 124 0 7 chr1 76765643 76765949 -205427715 - AluSq SINE Alu -9 304 1 366 267 30 0 chr1 76766005 76766106 -205427558 - MIR SINE MIR -63 199 96 1174 262 62 42 chr1 76766409 76766814 -205426850 - LTR16C LTR ERVL 0 491 79 180 77 0 0 chr1 76766932 76766958 -205426706 + (TG)n Simple_repeat Simple_repeat 1 26 0 27 29 0 0 chr1 76767092 76767126 -205426538 + AT_rich Low_complexity Low_complexity 1 34 0 572 367 35 6 chr1 76767774 76768093 -205425571 + L2 LINE L2 2081 2408 -906 2043 108 0 7 chr1 76768154 76768432 -205425232 + AluSq SINE Alu 11 286 -27 191 305 85 24 chr1 76768657 76768739 -205424925 + L2 LINE L2 3227 3313 0 888 243 73 46 chr1 76768843 76769290 -205424374 + MLT1G1 LTR MaLR 1 468 -87 309 284 90 99 chr1 76769915 76770461 -205423203 + MLT1K LTR MaLR 48 588 0 2134 93 10 17 chr1 76770498 76770798 -205422866 + AluSx SINE Alu 1 298 -14 5313 102 30 7 chr1 76770947 76771709 -205421955 - LTR17 LTR ERV1 0 780 1 258 315 45 36 chr1 76772569 76772680 -205420984 + L2 LINE L2 3197 3308 -5 863 252 42 34 chr1 76773094 76773332 -205420332 + L2 LINE L2 2100 2339 -975 562 207 59 22 chr1 76773322 76773335 -205420329 - L2 LINE L2 -962 2352 2341 * 2765 84 0 0 chr1 76773335 76773703 -205419961 - L1PA8 LINE L1 0 6487 6120 386 56 0 0 chr1 76773703 76773752 -205419912 + L1PA8 LINE L1 6119 6172 0 562 207 59 22 chr1 76773752 76773872 -205419792 - L2 LINE L2 -972 2342 2213 27087 127 14 24 chr1 76773874 76776846 -205416818 - L1PA8 LINE L1 -315 6131 3131 2400 73 0 10 chr1 76776846 76777149 -205416515 - AluY SINE Alu -11 300 1 27087 127 14 24 chr1 76777149 76780332 -205413332 - L1PA8 LINE L1 -3315 3131 10 926 287 132 36 chr1 76780342 76781017 -205412647 + L2 LINE L2 2327 3305 -8 2132 121 0 0 chr1 76781017 76781314 -205412350 + AluSx SINE Alu 3 299 -13 2512 177 52 4 chr1 76781344 76781808 -205411856 - MER66B LTR ERV1 0 486 1 455 126 328 0 chr1 76781823 76781942 -205411722 + MSTA LTR MaLR 1 158 -270 1281 146 31 75 chr1 76782353 76782647 -205411017 + MSTA LTR MaLR 148 428 0 585 188 36 0 chr1 76782703 76782815 -205410849 + FAM SINE Alu 8 123 -62 40 0 0 0 chr1 76783076 76783116 -205410548 + AT_rich Low_complexity Low_complexity 1 40 0 850 136 0 0 chr1 76783116 76783234 -205410430 - AluJb SINE Alu -194 118 1 1049 164 0 28 chr1 76783755 76783932 -205409732 - FRAM SINE Alu -6 170 1 245 256 51 0 chr1 76784485 76784563 -205409101 - L1ME4a LINE L1 -65 6056 5975 229 221 47 35 chr1 76784603 76784689 -205408975 - Charlie2 DNA MER1_type 0 2862 2776 2185 119 0 0 chr1 76784705 76785007 -205408657 - AluSc SINE Alu -7 302 1 559 183 59 24 chr1 76785062 76785231 -205408433 - Charlie2a DNA MER1_type -1880 982 808 1969 75 3 78 chr1 76785265 76785559 -205408105 + AluY SINE Alu 1 272 -39 834 255 158 9 chr1 76785668 76786009 -205407655 - Charlie2a DNA MER1_type -2312 470 79 2228 135 0 0 chr1 76786268 76786580 -205407084 + AluSx SINE Alu 1 312 0 2274 149 16 5 chr1 76786606 76786988 -205406676 + MSTB LTR MaLR 41 426 0 1143 190 52 3 chr1 76786992 76787277 -205406387 + L1MA9 LINE L1 5039 5338 -837 1033 105 0 0 chr1 76787295 76787428 -205406236 + AluSq/x SINE Alu 1 133 -180 2030 104 14 11 chr1 76787432 76787711 -205405953 + AluSx SINE Alu 1 280 -32 465 19 0 0 chr1 76787713 76787767 -205405897 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 349 175 0 0 chr1 76787838 76787895 -205405769 - Tigger3(Golem) DNA MER2_type -2 3027 2971 3658 182 42 63 chr1 76787897 76788007 -205405657 + L1MA9 LINE L1 5331 5442 -870 1856 177 0 3 chr1 76788007 76788306 -205405358 + AluJb SINE Alu 1 298 -14 3658 182 42 63 chr1 76788306 76789197 -205404467 + L1MA9 LINE L1 5442 6311 -1 1338 152 128 8 chr1 76790204 76790447 -205403217 - AluSg1 SINE Alu -32 277 6 919 196 0 24 chr1 76790660 76790828 -205402836 + FRAM SINE Alu 2 165 -1 293 68 23 0 chr1 76791022 76791066 -205402598 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 204 423 40 7 chr1 76791430 76791579 -205402085 - L3 LINE CR1 -47 1530 1377 2103 85 74 0 chr1 76791959 76792242 -205401422 + AluSx SINE Alu 1 304 -8 231 216 20 0 chr1 76792842 76792893 -205400771 - Charlie8 DNA MER1_type -1000 1417 1366 396 245 0 10 chr1 76792928 76793030 -205400634 - Charlie8 DNA MER1_type -2235 182 82 321 174 147 38 chr1 76793195 76793301 -205400363 + MIR SINE MIR 35 154 -62 23 0 0 0 chr1 76793524 76793547 -205400117 + AT_rich Low_complexity Low_complexity 1 23 0 1683 122 81 152 chr1 76794360 76794894 -205398770 - LTR54B LTR ERV1 -2 496 1 232 345 86 0 chr1 76795971 76796087 -205397577 - L2 LINE L2 -4 3268 3143 820 231 73 63 chr1 76796990 76797466 -205396198 - L1ME4a LINE L1 -224 5897 5417 21 0 0 0 chr1 76797471 76797492 -205396172 + AT_rich Low_complexity Low_complexity 1 21 0 628 257 15 119 chr1 76797777 76798120 -205395544 - MLT1K LTR MaLR -74 514 208 1991 186 46 0 chr1 76798416 76798787 -205394877 - L1MB3 LINE L1 -11 6172 5785 1006 171 0 6 chr1 76798902 76799072 -205394592 - FRAM SINE Alu -8 168 1 511 307 91 30 chr1 76799079 76799343 -205394321 - L2 LINE L2 -1305 2009 1730 43600 52 4 3 chr1 76799720 76805858 -205387806 - L1PA4 LINE L1 -3 6152 9 2189 125 3 0 chr1 76806335 76806639 -205387025 + AluSx SINE Alu 1 305 -7 525 250 9 0 chr1 76806880 76806988 -205386676 + MER81 DNA DNA 6 114 0 2348 96 0 3 chr1 76807033 76807336 -205386328 + AluSx SINE Alu 1 302 -10 2118 115 0 3 chr1 76807345 76807701 -205385963 + AluSq SINE Alu 1 355 0 346 264 11 11 chr1 76807778 76807869 -205385795 - MIR SINE MIR -10 252 162 2024 182 11 6 chr1 76807884 76808235 -205385429 + MLT1A1 LTR MaLR 13 365 0 408 294 0 40 chr1 76808241 76808367 -205385297 - MIR SINE MIR -105 157 37 24 32 0 0 chr1 76808472 76808503 -205385161 + AT_rich Low_complexity Low_complexity 1 31 0 729 127 71 8 chr1 76808517 76808643 -205385021 - AluSg/x SINE Alu -2 310 177 482 332 68 15 chr1 76808929 76809134 -205384530 - MIR SINE MIR -13 249 34 3293 174 65 12 chr1 76809411 76809742 -205383922 - L1MB8 LINE L1 -1 6177 5865 1859 112 4 11 chr1 76809742 76810002 -205383662 - AluSx SINE Alu -54 258 1 3293 174 65 12 chr1 76810002 76810358 -205383306 - L1MB8 LINE L1 -313 5865 5453 2172 107 47 0 chr1 76810865 76811163 -205382501 + AluSx SINE Alu 1 312 0 320 259 51 18 chr1 76811246 76811386 -205382278 - MLT1J LTR MaLR -138 477 228 394 191 79 22 chr1 76811509 76811598 -205382066 + MIR SINE MIR 66 159 -103 1854 208 52 0 chr1 76811677 76812024 -205381640 - MLT1A1 LTR MaLR 0 365 1 28 86 0 0 chr1 76812095 76812165 -205381499 + AT_rich Low_complexity Low_complexity 1 70 0 510 261 0 8 chr1 76812248 76812367 -205381297 + L2 LINE L2 3190 3307 -6 24 0 0 0 chr1 76812444 76812468 -205381196 + AT_rich Low_complexity Low_complexity 1 24 0 1577 131 83 48 chr1 76812744 76813034 -205380630 + AluJb SINE Alu 1 300 -12 186 213 0 21 chr1 76813632 76813679 -205379985 + L2 LINE L2 3263 3308 -5 2899 263 91 18 chr1 76814094 76815035 -205378629 + L2 LINE L2 1128 2137 -1177 319 250 44 37 chr1 76815386 76815522 -205378142 - MER65A LTR ERV1 -308 137 1 1413 267 171 28 chr1 76815522 76816544 -205377120 + L2 LINE L2 2141 3311 -2 4010 180 109 41 chr1 76816767 76817574 -205376090 - MER21B LTR ERV1 -1 862 1 1942 139 24 10 chr1 76818120 76818414 -205375250 - AluSx SINE Alu -14 298 1 528 247 26 58 chr1 76818522 76818676 -205374988 - MIR SINE MIR -110 152 4 24 0 0 0 chr1 76818872 76818896 -205374768 + AT_rich Low_complexity Low_complexity 1 24 0 429 221 11 11 chr1 76819225 76819320 -205374344 + U6 snRNA snRNA 7 101 -6 1526 166 53 43 chr1 76819343 76819645 -205374019 + AluJo SINE Alu 1 305 -7 867 156 68 51 chr1 76820704 76820744 -205372920 - MSTB LTR MaLR 0 426 388 1711 162 33 0 chr1 76820744 76821015 -205372649 + AluJb SINE Alu 1 280 -32 297 0 0 0 chr1 76821020 76821053 -205372611 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 867 156 68 51 chr1 76821053 76821331 -205372333 - MSTB LTR MaLR -41 385 1 1772 175 0 0 chr1 76821744 76822030 -205371634 + AluJb SINE Alu 1 286 -26 952 213 10 69 chr1 76822574 76822865 -205370799 - ORSL DNA AcHobo 0 275 2 21 82 0 0 chr1 76822876 76822925 -205370739 + AT_rich Low_complexity Low_complexity 1 49 0 822 179 0 0 chr1 76822976 76823093 -205370571 + FLAM_C SINE Alu 3 119 -24 21 26 0 26 chr1 76823100 76823115 -205370549 + AT_rich Low_complexity Low_complexity 1 15 -23 2381 61 0 10 chr1 76823115 76823411 -205370253 - AluY SINE Alu -6 305 13 21 26 0 26 chr1 76823411 76823434 -205370230 + AT_rich Low_complexity Low_complexity 15 38 0 2011 112 41 10 chr1 76823471 76823766 -205369898 - AluSx SINE Alu -8 304 1 355 187 43 122 chr1 76824087 76824204 -205369460 - L1ME4a LINE L1 -68 6053 5947 2203 96 7 20 chr1 76824204 76824506 -205369158 + AluSx SINE Alu 1 298 -14 355 187 43 122 chr1 76824506 76824527 -205369137 - L1ME4a LINE L1 -174 5947 5926 405 317 54 16 chr1 76824527 76824713 -205368951 - L2 LINE L2 -17 3296 3104 423 247 170 13 chr1 76824881 76825116 -205368548 - L1ME4a LINE L1 -224 5897 5626 187 163 0 47 chr1 76825245 76825288 -205368376 - MIR SINE MIR -3 259 219 1418 149 22 115 chr1 76825288 76825611 -205368053 - AluYb8 SINE Alu -17 301 9 252 306 113 0 chr1 76825614 76825738 -205367926 - MIR SINE MIR -48 214 77 1139 175 0 15 chr1 76825750 76825956 -205367708 - AluJo SINE Alu -109 203 1 451 272 183 0 chr1 76826246 76826426 -205367238 - MIR SINE MIR -13 249 37 315 213 0 0 chr1 76826533 76826608 -205367056 + CT-rich Low_complexity Low_complexity 1 75 0 2235 39 0 0 chr1 76827146 76827404 -205366260 - AluY SINE Alu -13 298 41 1950 135 0 42 chr1 76827851 76828162 -205365502 - AluSx SINE Alu -14 298 1 903 101 19 13 chr1 76828955 76829114 -205364550 + (TTTC)n Simple_repeat Simple_repeat 3 162 0 1863 121 14 14 chr1 76829114 76829394 -205364270 - AluSx SINE Alu -32 280 1 1011 183 0 6 chr1 76829394 76829563 -205364101 - FRAM SINE Alu -14 162 1 189 0 0 0 chr1 76829966 76829987 -205363677 + (T)n Simple_repeat Simple_repeat 1 21 0 1950 123 6 43 chr1 76830275 76830503 -205363161 - L1PA16 LINE L1 0 6166 5931 2871 85 6 0 chr1 76830503 76830856 -205362808 + THE1A LTR MaLR 1 355 0 12455 92 10 2 chr1 76830856 76832424 -205361240 + THE1A-int LTR MaLR 1 1580 0 2687 99 8 3 chr1 76832424 76832777 -205360887 + THE1A LTR MaLR 1 355 0 1950 123 6 43 chr1 76832777 76832870 -205360794 - L1PA16 LINE L1 -232 5934 5855 1533 147 29 73 chr1 76833541 76833854 -205359810 - AluJo SINE Alu -13 299 1 2071 130 7 7 chr1 76834420 76834721 -205358943 + AluSx SINE Alu 1 301 -11 292 349 23 16 chr1 76834970 76835099 -205358565 - MIR SINE MIR -59 203 74 434 270 37 74 chr1 76835549 76835625 -205358039 + MIR SINE MIR 1 78 -184 1839 145 6 35 chr1 76835625 76835936 -205357728 - AluJb SINE Alu -10 302 1 434 270 37 74 chr1 76835936 76835949 -205357715 + MIR SINE MIR 78 90 -172 2007 123 41 0 chr1 76835949 76836241 -205357423 - AluSg SINE Alu -6 304 1 434 270 37 74 chr1 76836241 76836420 -205357244 + MIR SINE MIR 90 260 -2 1735 159 98 13 chr1 76836582 76836897 -205356767 + MER7A DNA MER2_type 6 345 -1 830 211 23 12 chr1 76837109 76837280 -205356384 + FAM SINE Alu 1 173 -2 317 296 31 0 chr1 76837458 76837556 -205356108 + MIR SINE MIR 103 203 -59 4300 42 17 0 chr1 76837824 76838306 -205355358 + LTR2B LTR ERV1 1 490 0 257 186 43 29 chr1 76838312 76838382 -205355282 - MLT1H LTR MaLR -19 523 453 330 246 173 70 chr1 76838464 76838736 -205354928 - MLT1H LTR MaLR -243 306 7 370 343 154 3 chr1 76838836 76839206 -205354458 + L2 LINE L2 1936 2361 -953 217 329 24 24 chr1 76839259 76839341 -205354323 + L2 LINE L2 3104 3185 -87 1479 176 24 24 chr1 76839536 76839832 -205353832 - MER58B DNA MER1_type 0 341 46 262 234 0 43 chr1 76841353 76841447 -205352217 + L1MC4 LINE L1 6614 6703 -1339 1752 159 19 36 chr1 76841723 76842031 -205351633 + AluJb SINE Alu 1 303 -9 306 205 0 0 chr1 76842031 76842109 -205351555 + (TA)n Simple_repeat Simple_repeat 1 78 0 2196 114 0 3 chr1 76842166 76842456 -205351208 + AluSx SINE Alu 1 289 -23 257 306 14 0 chr1 76842530 76842602 -205351062 + L2 LINE L2 3236 3308 -5 1624 174 7 24 chr1 76842866 76843159 -205350505 + AluJo SINE Alu 2 289 -23 2067 155 0 0 chr1 76843168 76843471 -205350193 + AluSx SINE Alu 1 303 -9 1151 160 21 16 chr1 76843667 76843861 -205349803 + AluJ SINE Alu 1 195 -117 589 155 0 0 chr1 76843882 76843979 -205349685 - AluJo/FRAM SINE Alu -74 238 142 567 153 0 0 chr1 76843981 76844066 -205349598 + AluJ SINE Alu 181 265 -47 2004 143 0 0 chr1 76844122 76844408 -205349256 + AluSx SINE Alu 3 288 -24 823 179 0 21 chr1 76844969 76845114 -205348550 + FLAM_C SINE Alu 1 142 -1 2178 116 0 16 chr1 76845180 76845498 -205348166 - AluSq SINE Alu 0 313 1 194 300 62 0 chr1 76845715 76845795 -205347869 - MIR SINE MIR -62 200 116 278 170 0 0 chr1 76845875 76845922 -205347742 + tRNA-Lys-AAG tRNA tRNA 1 47 -29 2203 113 0 10 chr1 76846053 76846372 -205347292 + AluSx SINE Alu 1 312 0 379 265 130 18 chr1 76846753 76846976 -205346688 - L1ME4a LINE L1 -201 5920 5673 405 280 32 19 chr1 76847105 76847262 -205346402 - L2 LINE L2 -3 3310 3152 678 309 57 16 chr1 76847911 76848157 -205345507 - MIR SINE MIR 0 262 7 1939 124 24 10 chr1 76848600 76848891 -205344773 - AluSx SINE Alu -17 295 1 3935 162 102 17 chr1 76849089 76849850 -205343814 - LTR1B LTR ERV1 0 826 1 1292 32 0 32 chr1 76851024 76851210 -205342454 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 461 93 27 0 chr1 76851210 76851285 -205342379 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 1514 174 34 48 chr1 76851285 76851579 -205342085 - AluJb SINE Alu -22 290 1 1684 224 51 0 chr1 76851613 76851983 -205341681 - MLT1D LTR MaLR 0 505 117 3400 225 45 26 chr1 76852054 76852853 -205340811 - MER21B LTR ERV1 -49 814 1 384 200 0 0 chr1 76852853 76852923 -205340741 - MLT1D LTR MaLR -435 70 1 231 291 67 58 chr1 76852963 76853186 -205340478 - LTR67 LTR ERVL -2 555 331 554 244 38 6 chr1 76854292 76854452 -205339212 + L1ME4a LINE L1 5594 5758 -363 558 326 83 5 chr1 76854453 76854671 -205338993 - MIR SINE MIR -3 259 25 286 246 70 37 chr1 76854671 76854819 -205338845 + L1ME4a LINE L1 5730 5887 -234 2051 157 0 10 chr1 76854819 76855125 -205338539 + AluSx SINE Alu 1 303 -9 286 246 70 37 chr1 76855125 76855163 -205338501 + L1ME4a LINE L1 5887 5922 -199 807 281 32 0 chr1 76855571 76855792 -205337872 + MIR SINE MIR 23 250 -12 1994 124 72 39 chr1 76855836 76856150 -205337514 + THE1C LTR MaLR 1 330 -45 1995 127 0 55 chr1 76856150 76856458 -205337206 + AluSx SINE Alu 3 293 -19 1994 124 72 39 chr1 76856458 76856505 -205337159 + THE1C LTR MaLR 330 374 -1 396 0 0 0 chr1 76857011 76857055 -205336609 + (TG)n Simple_repeat Simple_repeat 1 44 0 24 67 0 0 chr1 76857651 76857696 -205335968 + AT_rich Low_complexity Low_complexity 1 45 0 2178 114 34 0 chr1 76857780 76858077 -205335587 - AluSg SINE Alu -3 307 1 2256 126 3 0 chr1 76858464 76858774 -205334890 - AluSx SINE Alu -1 311 1 2325 101 7 0 chr1 76860116 76860422 -205333242 - AluSx SINE Alu -4 308 1 475 286 52 12 chr1 76860517 76860688 -205332976 - MIR SINE MIR -66 142 19 705 288 30 30 chr1 76860949 76861151 -205332513 - L2 LINE L2 -1 3312 3108 1845 164 30 3 chr1 76861151 76861449 -205332215 + AluJo SINE Alu 6 311 -1 705 288 30 30 chr1 76861449 76861482 -205332182 - L2 LINE L2 -204 3109 3077 563 244 37 74 chr1 76861606 76861791 -205331873 - MIR SINE MIR -63 145 2 271 235 0 0 chr1 76862050 76862101 -205331563 + L2 LINE L2 3258 3308 -5 31 0 0 0 chr1 76862267 76862298 -205331366 + AT_rich Low_complexity Low_complexity 1 31 0 1993 133 0 3 chr1 76862338 76862646 -205331018 - AluJb SINE Alu 0 307 1 21 0 0 0 chr1 76862698 76862719 -205330945 + AT_rich Low_complexity Low_complexity 1 21 0 299 318 178 9 chr1 76863494 76863708 -205329956 - MIR SINE MIR -9 253 4 3124 98 16 0 chr1 76863783 76864210 -205329454 - MER57B LTR ERV1 0 434 1 1667 48 121 0 chr1 76864210 76864441 -205329223 - MER57B-int LTR ERV1 0 7537 7279 694 117 23 31 chr1 76864441 76864569 -205329095 - LTR54B LTR ERV1 -367 131 5 11828 99 29 17 chr1 76864573 76866385 -205327279 - MER57B-int LTR ERV1 -388 7149 5316 28301 91 4 6 chr1 76866395 76870388 -205323276 - L1PA7 LINE L1 -4 6465 2480 2326 98 3 0 chr1 76870388 76870685 -205322979 - AluSp SINE Alu -15 298 1 28301 91 4 6 chr1 76870685 76871821 -205321843 - L1PA7 LINE L1 -3989 2480 1344 1942 149 0 3 chr1 76871819 76872204 -205321460 - L1PA7 LINE L1 -5901 560 5 * 3958 133 48 17 chr1 76872227 76873317 -205320347 - MER57B-int LTR ERV1 -2208 5329 1853 3134 119 45 25 chr1 76873315 76874252 -205319412 - MER57B-int LTR ERV1 -3580 2381 1577 * 2468 83 0 0 chr1 76874252 76874554 -205319110 + AluY SINE Alu 1 302 -9 3134 119 45 25 chr1 76874554 76874728 -205318936 - MER57B-int LTR ERV1 -4384 1577 1408 2373 143 55 0 chr1 76874708 76875108 -205318556 - MER57B-int LTR ERV1 -4172 1774 1353 * 4145 135 20 1 chr1 76875102 76875753 -205317911 - MER57B-int LTR ERV1 -6874 663 1 2959 91 26 21 chr1 76875756 76876185 -205317479 - MER57B LTR ERV1 -3 431 1 2034 153 0 0 chr1 76877162 76877450 -205316214 - AluSx SINE Alu -24 288 1 213 39 0 0 chr1 76877488 76877514 -205316150 + (TA)n Simple_repeat Simple_repeat 2 27 0 2065 134 3 0 chr1 76878529 76878820 -205314844 - AluJo SINE Alu -20 292 1 249 322 161 49 chr1 76879290 76879576 -205314088 - L2 LINE L2 -2709 605 288 1007 180 133 34 chr1 76880319 76880613 -205313051 - MLT1A1 LTR MaLR -42 323 1 2208 110 7 0 chr1 76880773 76881073 -205312591 - AluSx SINE Alu 0 312 11 600 249 73 6 chr1 76882311 76882476 -205311188 - L1ME LINE L1 -473 5693 5518 185 194 81 48 chr1 76882515 76882577 -205311087 - MIR SINE MIR -62 146 83 2410 106 0 0 chr1 76882764 76883076 -205310588 + AluSq SINE Alu 1 312 -1 279 260 94 61 chr1 76883505 76883686 -205309978 - MER117 DNA MER1_type -4 193 7 669 159 98 0 chr1 76883849 76883981 -205309683 + FRAM SINE Alu 17 161 -15 451 197 79 47 chr1 76884226 76884353 -205309311 - MER94 DNA DNA -1 133 3 391 244 97 88 chr1 76885322 76885560 -205308104 - L2 LINE L2 -50 3263 3024 189 107 0 0 chr1 76886148 76886176 -205307488 + (TG)n Simple_repeat Simple_repeat 2 29 0 1422 181 107 7 chr1 76886186 76886467 -205307197 - AluJb SINE Alu -1 311 3 1519 133 189 0 chr1 76886711 76886960 -205306704 + AluSx SINE Alu 1 296 -16 416 272 94 67 chr1 76888433 76888805 -205304859 - L1MC4a LINE L1 -171 5999 5615 722 198 8 0 chr1 76888842 76888968 -205304696 + FLAM_A SINE Alu 1 127 -6 336 264 159 28 chr1 76889034 76889216 -205304448 - L1MC4a LINE L1 -2336 5472 5267 290 70 0 0 chr1 76889374 76889417 -205304247 - LTR54 LTR ERV1 0 510 468 2340 102 0 0 chr1 76889422 76889717 -205303947 + AluSx SINE Alu 1 295 -17 766 185 0 15 chr1 76889729 76889864 -205303800 + FLAM_C SINE Alu 1 133 -10 652 136 0 0 chr1 76889881 76889984 -205303680 - LTR54 LTR ERV1 -33 477 375 1172 122 61 14 chr1 76889984 76890198 -205303466 - LTR54 LTR ERV1 -286 224 1 2073 172 41 10 chr1 76890237 76890626 -205303038 + MSTA LTR MaLR 1 401 -27 279 146 0 0 chr1 76890808 76890849 -205302815 + MSTA LTR MaLR 386 426 0 2196 121 0 3 chr1 76890918 76891223 -205302441 + AluSx SINE Alu 1 304 -8 181 357 48 16 chr1 76891240 76891366 -205302298 + MIR SINE MIR 77 206 -56 1749 157 31 0 chr1 76891385 76891672 -205301992 + AluJb SINE Alu 12 307 -5 881 152 0 0 chr1 76892023 76892148 -205301516 - AluJb SINE Alu -187 125 1 1736 175 3 10 chr1 76892763 76893081 -205300583 - AluJo SINE Alu 0 312 1 1941 248 233 17 chr1 76893217 76894335 -205299329 + L2 LINE L2 1967 3313 0 1754 149 27 37 chr1 76894865 76895160 -205298504 - AluJb SINE Alu -20 292 1 186 43 0 0 chr1 76895170 76895193 -205298471 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2215 126 66 26 chr1 76895377 76895727 -205297937 + THE1B LTR MaLR 1 364 0 1206 255 76 64 chr1 76895758 76896260 -205297404 + MLT1J LTR MaLR 1 508 -3 1752 187 42 70 chr1 76896320 76896721 -205296943 - MLT1B LTR MaLR 0 390 1 265 231 46 56 chr1 76896810 76896918 -205296746 + MLT1K LTR MaLR 191 297 -291 213 121 0 0 chr1 76897241 76897274 -205296390 + (A)n Simple_repeat Simple_repeat 1 33 0 481 269 49 0 chr1 76898079 76898265 -205295399 - MIR SINE MIR -52 210 16 10474 88 55 6 chr1 76898506 76900687 -205292977 + L1PA8 LINE L1 3991 6205 0 2004 145 3 0 chr1 76900835 76901132 -205292532 + AluSx SINE Alu 1 298 -14 2103 125 0 3 chr1 76902087 76902375 -205291289 + AluSx SINE Alu 1 287 -25 2416 61 7 0 chr1 76902782 76903077 -205290587 - AluY SINE Alu -14 297 1 775 247 20 96 chr1 76903153 76903484 -205290180 + L1MC4 LINE L1 7632 7861 -134 914 115 0 50 chr1 76903484 76903623 -205290041 + FLAM_C SINE Alu 1 132 -1 775 247 20 96 chr1 76903623 76903748 -205289916 + L1MC4 LINE L1 7861 7994 -1 284 348 25 0 chr1 76903756 76903874 -205289790 + MIR SINE MIR 31 151 -57 296 217 0 58 chr1 76905103 76905172 -205288492 - MLT1K LTR MaLR -87 501 437 2136 131 0 3 chr1 76905233 76905546 -205288118 - AluSx SINE Alu 0 312 1 921 193 70 0 chr1 76905588 76905759 -205287905 - LTR39 LTR ERV1 0 783 601 841 156 0 15 chr1 76905765 76905900 -205287764 + AluJo SINE Alu 2 134 -178 3515 147 15 43 chr1 76905925 76906532 -205287132 - LTR39 LTR ERV1 -193 590 1 588 268 68 27 chr1 76906532 76906751 -205286913 - MER34 LTR ERV1 -58 484 257 836 53 18 0 chr1 76906885 76906998 -205286666 + (TTTC)n Simple_repeat Simple_repeat 2 116 0 2682 75 0 3 chr1 76906998 76907345 -205286319 - L1PA8 LINE L1 -22 6150 5805 1048 150 0 12 chr1 76907351 76907511 -205286153 - FRAM SINE Alu -19 157 1 363 284 58 13 chr1 76907512 76907667 -205285997 - MER34 LTR ERV1 -380 162 1 503 322 117 24 chr1 76907668 76907966 -205285698 - MLT1K LTR MaLR -149 439 114 242 273 18 0 chr1 76908003 76908058 -205285606 - MER5A DNA MER1_type -6 183 128 1833 140 0 0 chr1 76908060 76908324 -205285340 + AluSx SINE Alu 29 292 -20 35 0 0 0 chr1 76908325 76908360 -205285304 + AT_rich Low_complexity Low_complexity 1 35 0 241 255 21 85 chr1 76908361 76908455 -205285209 - MER5A DNA MER1_type -77 112 25 186 43 0 0 chr1 76908491 76908514 -205285150 + (TAG)n Simple_repeat Simple_repeat 2 24 0 768 251 6 0 chr1 76908541 76908704 -205284960 - MER45A DNA AcHobo -14 164 1 362 292 0 10 chr1 76909085 76909181 -205284483 + L2 LINE L2 3136 3230 -42 931 268 38 25 chr1 76909234 76909378 -205284286 - L1ME LINE L1 -665 5482 5341 2590 122 21 5 chr1 76909378 76909762 -205283902 - MLT1B LTR MaLR 0 390 1 931 268 38 25 chr1 76909762 76910201 -205283463 - L1ME LINE L1 -806 5341 4882 388 280 154 45 chr1 76910308 76910705 -205282959 - L1MEc LINE L1 -4863 1294 817 2877 77 50 77 chr1 76911470 76911926 -205281738 + MLT2A1 LTR ERVL 1 444 0 16222 72 10 1 chr1 76911926 76913962 -205279702 + HERVL-A1 LTR ERVL 1 2056 -3598 15429 63 14 0 chr1 76913947 76915833 -205277831 + HERVL LTR ERVL 3314 5225 -429 * 180 0 0 0 chr1 76915839 76915859 -205277805 + (TA)n Simple_repeat Simple_repeat 2 21 0 767 167 0 0 chr1 76915861 76915981 -205277683 - MER34 LTR ERV1 -298 244 125 2094 145 0 0 chr1 76916056 76916359 -205277305 - AluSx SINE Alu -9 303 1 422 174 0 87 chr1 76916567 76916659 -205277005 - MER34 LTR ERV1 -447 95 12 198 390 28 11 chr1 76916711 76916893 -205276771 + L2 LINE L2 2898 3082 -190 472 117 39 0 chr1 76917519 76917596 -205276068 - MADE1 DNA Mariner 0 80 1 2138 209 147 53 chr1 76918068 76918666 -205274998 + MLT1E1 LTR MaLR 1 654 0 225 0 0 0 chr1 76918703 76918728 -205274936 + (A)n Simple_repeat Simple_repeat 1 25 0 417 276 93 84 chr1 76919220 76919413 -205274251 + L1MB8 LINE L1 4137 4336 -1810 1948 154 7 7 chr1 76919413 76919718 -205273946 + AluJo SINE Alu 1 305 -7 417 276 93 84 chr1 76919718 76919857 -205273807 + L1MB8 LINE L1 4336 4472 -1674 908 276 134 31 chr1 76920014 76920500 -205273164 - L1MC4a LINE L1 -1835 5973 5438 3109 192 28 28 chr1 76920500 76921144 -205272520 + L1MB8 LINE L1 5419 6065 -113 2219 111 3 0 chr1 76921144 76921441 -205272223 + AluSq SINE Alu 2 299 -14 3109 192 28 28 chr1 76921441 76921472 -205272192 + L1MB8 LINE L1 6064 6094 -84 480 244 44 17 chr1 76921480 76921660 -205272004 - L1MC4a LINE L1 -2359 5449 5265 861 323 27 39 chr1 76921683 76921708 -205271956 + L1ME3A LINE L1 5461 5485 -685 1787 189 58 80 chr1 76921708 76922169 -205271495 + MLT1D LTR MaLR 1 452 -53 2336 61 7 0 chr1 76922169 76922481 -205271183 - AluY SINE Alu 0 314 1 1787 189 58 80 chr1 76922481 76922532 -205271132 + MLT1D LTR MaLR 452 503 -2 861 323 27 39 chr1 76922532 76922992 -205270672 + L1ME3A LINE L1 5485 5940 -230 383 156 31 0 chr1 76923245 76923309 -205270355 - MER58B DNA MER1_type 0 341 276 3072 258 72 19 chr1 76923309 76924520 -205269144 + L1MC/D LINE L1 783 2057 -4339 398 277 105 85 chr1 76924519 76924966 -205268698 + L1MC/D LINE L1 5438 5893 -1984 * 404 58 0 19 chr1 76924966 76925018 -205268646 + Alu SINE Alu 2 52 -257 1414 91 5 35 chr1 76925018 76925217 -205268447 + AluSg/x SINE Alu 114 306 -6 2113 130 3 0 chr1 76926476 76926775 -205266889 - AluSx SINE Alu -12 300 1 288 137 0 0 chr1 76927577 76927628 -205266036 + (TTTTTG)n Simple_repeat Simple_repeat 2 52 0 248 310 200 0 chr1 76927906 76928006 -205265658 - L2 LINE L2 -8 3305 3186 264 297 0 0 chr1 76928495 76928505 -205265159 + (TA)n Simple_repeat Simple_repeat 2 11 -64 2413 90 0 0 chr1 76928505 76928805 -205264859 + AluSg SINE Alu 2 301 -9 264 297 0 0 chr1 76928805 76928868 -205264796 + (TA)n Simple_repeat Simple_repeat 10 75 0 1269 226 181 34 chr1 76928964 76929556 -205264108 - Charlie7 DNA MER1_type -494 2118 1440 234 237 34 0 chr1 76929608 76929667 -205263997 + HsTC2 DNA Tc2 1 61 -1837 376 228 31 83 chr1 76929822 76930015 -205263649 + HsTC2 DNA Tc2 1709 1891 -7 781 163 0 23 chr1 76930024 76930153 -205263511 + FLAM_C SINE Alu 4 129 -14 416 266 212 11 chr1 76930207 76930391 -205263273 - Charlie7 DNA MER1_type -2349 263 43 336 194 65 65 chr1 76930603 76930711 -205262953 - MIR SINE MIR -92 170 63 201 163 12 75 chr1 76930798 76930878 -205262786 + C-rich Low_complexity Low_complexity 3 77 0 204 40 0 0 chr1 76931176 76931201 -205262463 + (TA)n Simple_repeat Simple_repeat 1 25 0 247 303 67 0 chr1 76931573 76931662 -205262002 + MIR SINE MIR 48 142 -120 2209 108 3 0 chr1 76931820 76932108 -205261556 + AluSx SINE Alu 3 291 -21 291 157 0 0 chr1 76932115 76932166 -205261498 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 255 239 177 18 chr1 76932257 76932370 -205261294 - MIR SINE MIR -10 252 122 2232 104 0 28 chr1 76932972 76933289 -205260375 + AluSq SINE Alu 1 308 -5 180 0 0 0 chr1 76933367 76933387 -205260277 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 647 220 102 72 chr1 76933696 76933798 -205259866 - MIR SINE MIR 0 262 164 2308 102 7 0 chr1 76933798 76934102 -205259562 - AluSc SINE Alu -3 306 1 647 220 102 72 chr1 76934102 76934235 -205259429 - MIR SINE MIR -98 164 20 310 325 0 0 chr1 76935707 76935824 -205257840 + A-rich Low_complexity Low_complexity 1 117 0 231 220 0 0 chr1 76936448 76936498 -205257166 + MIR SINE MIR 200 249 -13 346 293 113 38 chr1 76936602 76936622 -205257042 + MIR3 SINE MIR 30 47 -161 2041 110 11 14 chr1 76936622 76936903 -205256761 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr1 76936903 76936928 -205256736 + (GA)n Simple_repeat Simple_repeat 2 26 0 346 293 113 38 chr1 76936928 76937039 -205256625 + MIR3 SINE MIR 46 172 -36 198 289 20 105 chr1 76937434 76937586 -205256078 - MIR SINE MIR 0 262 124 1171 201 48 4 chr1 76938595 76939035 -205254629 - MER34 LTR ERV1 0 542 27 205 300 70 20 chr1 76939208 76939308 -205254356 - L2 LINE L2 -93 3220 3116 724 325 110 15 chr1 76939377 76939499 -205254165 + L2 LINE L2 2543 2652 -661 288 0 0 0 chr1 76939499 76939531 -205254133 + (TG)n Simple_repeat Simple_repeat 2 33 0 724 325 110 15 chr1 76939531 76940110 -205253554 + L2 LINE L2 2652 3311 -2 254 299 91 56 chr1 76940119 76940316 -205253348 - L2 LINE L2 -240 3032 2829 1452 175 52 26 chr1 76940469 76940777 -205252887 - MLT1D LTR MaLR -189 316 1 1753 311 48 31 chr1 76940829 76942046 -205251618 - L2 LINE L2 -2 3311 2081 224 300 57 0 chr1 76942143 76942213 -205251451 + L2 LINE L2 3239 3312 -1 201 195 0 0 chr1 76942726 76942767 -205250897 - MIR SINE MIR -138 124 84 2423 165 0 14 chr1 76942805 76943175 -205250489 + MLT1A1 LTR MaLR 1 365 0 2064 80 7 18 chr1 76943816 76944102 -205249562 - L1PA7 LINE L1 0 6154 5872 454 125 0 0 chr1 76944141 76944205 -205249459 - Alu SINE Alu -14 298 235 180 0 0 0 chr1 76945158 76945178 -205248486 + (TC)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr1 76945513 76945537 -205248127 + (A)n Simple_repeat Simple_repeat 1 24 0 565 305 64 5 chr1 76946427 76946614 -205247050 + MIR SINE MIR 46 243 -19 1843 242 99 11 chr1 76946618 76947226 -205246438 + HAL1 LINE L1 1493 2153 -354 257 258 0 0 chr1 76947226 76947288 -205246376 + (TA)n Simple_repeat Simple_repeat 1 62 0 1839 152 10 3 chr1 76947303 76947599 -205246065 - AluSx SINE Alu -14 298 1 914 123 39 0 chr1 76947599 76947729 -205245935 - AluJb SINE Alu -177 135 1 275 375 71 38 chr1 76947806 76947990 -205245674 - L2 LINE L2 -685 2629 2440 741 256 33 11 chr1 76948052 76948272 -205245392 + MIR SINE MIR 37 259 -3 1970 168 3 0 chr1 76948341 76948639 -205245025 - AluSx SINE Alu -12 300 2 277 173 240 0 chr1 76948681 76948756 -205244908 - MIR SINE MIR -89 173 81 303 371 10 0 chr1 76949022 76949119 -205244545 + L2 LINE L2 3193 3290 -23 333 397 5 14 chr1 76949179 76949392 -205244272 + L3 LINE CR1 1282 1492 -85 521 276 114 9 chr1 76949392 76949602 -205244062 + MIR SINE MIR 4 235 -27 2323 79 0 0 chr1 76949998 76950337 -205243327 - AluSc SINE Alu 0 339 1 1960 125 4 4 chr1 76954636 76954942 -205238722 + AluSg SINE Alu 1 306 0 2159 84 4 4 chr1 76955296 76955571 -205238093 - AluSx SINE Alu -15 297 23 22 70 0 0 chr1 76956443 76956486 -205237178 + AT_rich Low_complexity Low_complexity 1 43 0 226 347 0 16 chr1 76957112 76957233 -205236431 + AluSg/x SINE Alu 172 290 -12 441 0 0 0 chr1 76957254 76957303 -205236361 + (TA)n Simple_repeat Simple_repeat 1 49 0 425 292 97 11 chr1 76957305 76957494 -205236170 - L1ME LINE L1 -472 5649 5450 461 301 57 9 chr1 76957854 76957940 -205235724 + MIR SINE MIR 23 103 -159 2569 68 0 0 chr1 76957940 76958247 -205235417 - AluSg SINE Alu -3 307 1 461 301 57 9 chr1 76958247 76958386 -205235278 + MIR SINE MIR 103 260 -2 313 348 49 18 chr1 76958514 76958678 -205234986 - L2 LINE L2 -3 3269 3101 2762 87 11 21 chr1 76958678 76959057 -205234607 + THE1C LTR MaLR 1 375 0 10201 112 34 43 chr1 76959061 76960310 -205233354 + THE1C-int LTR MaLR 1 1234 -346 1222 50 0 0 chr1 76960310 76960449 -205233215 + MER85 DNA T2_type 1 139 0 10201 112 34 43 chr1 76960449 76960793 -205232871 + THE1C-int LTR MaLR 1234 1580 0 2563 123 13 11 chr1 76960793 76961167 -205232497 + THE1C LTR MaLR 1 375 0 1172 146 0 0 chr1 76961298 76961463 -205232201 + FRAM SINE Alu 1 161 -15 197 337 123 37 chr1 76961513 76961839 -205231825 - L2 LINE L2 -340 2974 2621 824 154 0 23 chr1 76961942 76962072 -205231592 - FLAM_C SINE Alu -6 127 1 1338 114 0 0 chr1 76962158 76962342 -205231322 - AluSg/x SINE Alu -2 310 127 2411 77 0 10 chr1 76962378 76962690 -205230974 - AluY SINE Alu -2 309 1 364 260 104 0 chr1 76962958 76963054 -205230610 + MIR SINE MIR 48 153 -109 2705 144 86 5 chr1 76963148 76963577 -205230087 + MLT1C LTR MaLR 1 464 -3 290 318 82 27 chr1 76963663 76963773 -205229891 - L2 LINE L2 -13 3259 3144 304 351 19 19 chr1 76963805 76963959 -205229705 - L2 LINE L2 -222 3050 2897 2303 105 3 3 chr1 76964641 76964945 -205228719 - AluSx SINE Alu -8 304 1 2210 116 7 0 chr1 76964955 76965257 -205228407 - AluSx SINE Alu -8 304 1 2296 118 3 0 chr1 76965299 76965603 -205228061 - AluSg SINE Alu -5 305 1 183 42 0 0 chr1 76966019 76966043 -205227621 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1993 120 35 3 chr1 76966045 76966329 -205227335 - AluSx SINE Alu -19 293 1 969 180 141 127 chr1 76966331 76966764 -205226900 - MER4C LTR ERV1 -26 439 1 219 69 0 0 chr1 76967447 76967476 -205226188 + (CA)n Simple_repeat Simple_repeat 2 30 0 284 333 21 0 chr1 76967860 76967956 -205225708 - L2 LINE L2 -17 3296 3199 2582 65 3 0 chr1 76968027 76968336 -205225328 + AluY SINE Alu 1 310 -1 271 289 91 8 chr1 76968600 76968721 -205224943 + L2 LINE L2 1812 1942 -1372 1855 169 3 3 chr1 76968752 76969059 -205224605 - AluJb SINE Alu -5 307 1 227 314 71 0 chr1 76969063 76969133 -205224531 + L2 LINE L2 3125 3199 -73 261 0 0 0 chr1 76969365 76969394 -205224270 + (A)n Simple_repeat Simple_repeat 1 29 0 2271 118 0 0 chr1 76969396 76969702 -205223962 + AluSx SINE Alu 1 306 -6 324 323 6 25 chr1 76969900 76970061 -205223603 + L1MC4a LINE L1 5744 5901 -1907 24 0 0 0 chr1 76970202 76970226 -205223438 + AT_rich Low_complexity Low_complexity 1 24 0 1853 140 10 10 chr1 76970764 76971056 -205222608 + AluJb SINE Alu 4 295 -17 226 304 144 0 chr1 76971078 76971203 -205222461 + L2 LINE L2 3159 3301 -12 295 177 0 81 chr1 76971230 76971292 -205222372 - L2 LINE L2 -1 3312 3256 261 57 0 0 chr1 76972070 76972105 -205221559 + (CA)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr1 76972757 76972795 -205220869 + AT_rich Low_complexity Low_complexity 1 38 0 2141 90 57 0 chr1 76974130 76974409 -205219255 - AluSg SINE Alu -15 295 1 391 338 92 26 chr1 76974620 76974966 -205218698 - L3 LINE CR1 -83 1494 1126 1177 200 44 0 chr1 76975257 76975482 -205218182 - MIR SINE MIR -15 247 13 723 107 8 15 chr1 76976604 76976735 -205216929 + (TTCC)n Simple_repeat Simple_repeat 3 132 0 1800 179 10 17 chr1 76976755 76977056 -205216608 - AluJb SINE Alu -13 299 1 757 300 64 51 chr1 76977390 76977684 -205215980 - L1ME LINE L1 -450 5994 5690 2328 99 3 3 chr1 76977684 76977997 -205215667 - AluSq SINE Alu 0 313 1 757 300 64 51 chr1 76977997 76978152 -205215512 - L1ME LINE L1 -754 5690 5539 262 239 14 0 chr1 76978322 76978393 -205215271 - L1ME LINE L1 -1066 5360 5289 11123 170 54 66 chr1 76978620 76979760 -205213904 - L1MCa LINE L1 -2751 3675 2523 2086 138 3 0 chr1 76979760 76980057 -205213607 - AluSx SINE Alu -14 298 1 11123 170 54 66 chr1 76980057 76980651 -205213013 - L1MCa LINE L1 -3903 2523 1923 2561 74 3 0 chr1 76980651 76980961 -205212703 + AluSp SINE Alu 1 311 -2 2314 96 0 0 chr1 76980966 76981257 -205212407 + AluSc SINE Alu 1 291 -18 11123 170 54 66 chr1 76981257 76981564 -205212100 - L1MCa LINE L1 -4507 1919 1610 2949 9 0 0 chr1 76981564 76981882 -205211782 - AluYb8 SINE Alu 0 318 1 2213 113 3 0 chr1 76981884 76982177 -205211487 - AluSx SINE Alu -18 294 1 11123 170 54 66 chr1 76982177 76983355 -205210309 - L1MCa LINE L1 -4817 1609 418 2301 111 0 3 chr1 76983355 76983653 -205210011 - AluSx SINE Alu -15 297 1 11123 170 54 66 chr1 76983653 76983750 -205209914 - L1MCa LINE L1 -6008 418 321 2160 108 17 0 chr1 76983750 76984046 -205209618 - AluSx SINE Alu -11 301 1 11123 170 54 66 chr1 76984046 76984420 -205209244 - L1MCa LINE L1 -6105 321 21 1959 147 27 0 chr1 76984434 76984726 -205208938 - AluSx SINE Alu -12 300 1 281 298 71 6 chr1 76984735 76984903 -205208761 - L1M4 LINE L1 -2368 3778 3600 2128 140 3 0 chr1 76984996 76985304 -205208360 - AluSx SINE Alu -1 311 3 29 0 0 0 chr1 76985327 76985356 -205208308 + AT_rich Low_complexity Low_complexity 1 29 0 701 319 99 49 chr1 76985555 76985580 -205208084 - L1MDa LINE L1 -879 2022 2000 2257 106 0 0 chr1 76985580 76985872 -205207792 - AluSq SINE Alu -21 292 1 701 319 99 49 chr1 76985872 76986445 -205207219 - L1MDa LINE L1 -901 2000 1326 1758 161 0 69 chr1 76986767 76987091 -205206573 - AluSx SINE Alu 0 303 1 234 258 61 45 chr1 76988115 76988181 -205205483 - L2 LINE L2 0 3313 3247 324 208 14 14 chr1 76988517 76988589 -205205075 + MIR SINE MIR 64 135 -73 2234 106 3 13 chr1 76988723 76989034 -205204630 - AluSx SINE Alu -4 308 1 970 177 0 0 chr1 76989040 76989198 -205204466 - FRAM SINE Alu -20 156 1 210 248 165 68 chr1 76990064 76990197 -205203467 + L2 LINE L2 3167 3312 -1 1442 171 37 33 chr1 76990573 76990872 -205202792 - AluJo SINE Alu -6 306 7 902 290 58 28 chr1 76991031 76991459 -205202205 - L1ME LINE L1 -350 5771 5331 837 236 172 49 chr1 76991503 76991893 -205201771 + MLT1J LTR MaLR 7 444 -67 205 136 23 23 chr1 76991962 76992006 -205201658 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 637 261 0 0 chr1 76992517 76992647 -205201017 - FLAM_A SINE Alu -3 130 1 454 291 64 35 chr1 76992779 76992982 -205200682 - MIR SINE MIR -41 221 13 324 333 63 9 chr1 76993594 76993705 -205199959 + MIR SINE MIR 23 139 -123 23 0 0 0 chr1 76995480 76995503 -205198161 + AT_rich Low_complexity Low_complexity 1 23 0 485 351 6 23 chr1 76995595 76995766 -205197898 - MIR3 SINE MIR -25 183 16 187 217 188 0 chr1 76996121 76996190 -205197474 - MIR SINE MIR -7 255 174 675 257 29 6 chr1 76997017 76997192 -205196472 + MIR SINE MIR 59 237 -25 2171 137 3 0 chr1 76997477 76997784 -205195880 + AluSx SINE Alu 1 308 -4 495 284 20 40 chr1 76997943 76998091 -205195573 - MIR SINE MIR -115 147 3 2003 117 52 7 chr1 76998971 76999262 -205194402 - AluSx SINE Alu -8 304 1 1018 162 10 167 chr1 76999306 76999570 -205194094 + MER33 DNA MER1_type 1 188 -2397 2152 131 0 0 chr1 76999570 76999867 -205193797 + AluSx SINE Alu 1 297 -15 1018 162 10 167 chr1 76999867 76999985 -205193679 + MER33 DNA MER1_type 188 323 -1 432 263 45 30 chr1 77000144 77000277 -205193387 + L2 LINE L2 3138 3272 0 1764 163 22 0 chr1 77000781 77001057 -205192607 + AluJb SINE Alu 1 282 -30 1428 162 9 98 chr1 77001074 77001401 -205192263 + AluJb SINE Alu 1 298 -14 482 270 6 6 chr1 77001523 77001686 -205191978 + (CA)n Simple_repeat Simple_repeat 1 163 0 206 113 0 57 chr1 77001915 77001968 -205191696 + (A)n Simple_repeat Simple_repeat 1 50 0 287 303 40 0 chr1 77002196 77002295 -205191369 + MIR3 SINE MIR 106 208 0 741 148 28 11 chr1 77002574 77002750 -205190914 + CT-rich Low_complexity Low_complexity 2 180 0 1649 136 4 8 chr1 77002750 77003000 -205190664 - AluSx SINE Alu -38 274 26 410 299 70 35 chr1 77003097 77003298 -205190366 + L3 LINE CR1 1355 1562 -15 202 220 37 128 chr1 77003567 77003676 -205189988 - MIR SINE MIR -56 206 108 272 181 23 199 chr1 77004334 77004505 -205189159 + MIR SINE MIR 51 191 -71 2389 92 0 0 chr1 77004652 77004955 -205188709 - AluSx SINE Alu -9 303 1 2174 115 0 31 chr1 77005791 77006113 -205187551 - AluJb SINE Alu 0 312 1 291 54 0 0 chr1 77006217 77006254 -205187410 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 195 227 167 45 chr1 77006458 77006524 -205187140 + L2 LINE L2 3239 3312 -1 294 270 161 20 chr1 77007083 77007263 -205186401 + MIR SINE MIR 50 251 -11 360 309 9 18 chr1 77007286 77007396 -205186268 - MIR SINE MIR -134 128 20 276 213 9 74 chr1 77007476 77007584 -205186080 + T-rich Low_complexity Low_complexity 3 103 0 429 305 93 31 chr1 77007767 77007993 -205185671 - MIR SINE MIR -11 251 12 689 333 21 12 chr1 77008674 77009001 -205184663 + L2 LINE L2 1380 1709 -1605 1684 181 49 12 chr1 77009267 77009378 -205184286 + MER58B DNA MER1_type 2 107 -2313 2454 63 0 3 chr1 77009378 77009679 -205183985 + AluY SINE Alu 1 300 -11 1684 181 49 12 chr1 77009679 77009892 -205183772 + MER58B DNA MER1_type 107 338 -3 22 70 0 0 chr1 77010748 77010791 -205182873 + AT_rich Low_complexity Low_complexity 1 43 0 1582 147 16 16 chr1 77011663 77011915 -205181749 + AluSq SINE Alu 23 274 -39 251 209 75 0 chr1 77012003 77012070 -205181594 - MLT1J LTR MaLR -439 72 1 2222 93 0 0 chr1 77012089 77012388 -205181276 - AluSg SINE Alu 0 299 1 278 238 131 8 chr1 77012388 77012510 -205181154 + L1ME4a LINE L1 5985 6121 0 438 225 133 58 chr1 77012795 77012968 -205180696 - MLT1J LTR MaLR -27 588 327 307 157 14 43 chr1 77012986 77013056 -205180608 - MLT1I LTR MaLR -261 148 81 293 253 116 0 chr1 77013420 77013515 -205180149 + L2 LINE L2 3208 3313 0 183 80 0 0 chr1 77014195 77014220 -205179444 + (T)n Simple_repeat Simple_repeat 1 25 0 427 298 70 18 chr1 77014809 77014980 -205178684 + MIR SINE MIR 31 210 -52 234 0 0 0 chr1 77015099 77015125 -205178539 + (TG)n Simple_repeat Simple_repeat 2 27 0 42 77 0 0 chr1 77015212 77015303 -205178361 + AT_rich Low_complexity Low_complexity 1 91 0 719 219 25 56 chr1 77015306 77015382 -205178282 - MIR SINE MIR -29 233 156 2230 80 3 30 chr1 77015382 77015683 -205177981 - AluY SINE Alu -17 294 2 719 219 25 56 chr1 77015683 77015802 -205177862 - MIR SINE MIR -106 156 44 355 279 106 39 chr1 77015944 77016152 -205177512 + L1MC4a LINE L1 5665 5886 -1922 2069 100 40 13 chr1 77016365 77016665 -205176999 - AluSx SINE Alu -4 308 1 276 232 72 116 chr1 77017452 77017590 -205176074 - MIR3 SINE MIR -29 179 48 197 399 91 7 chr1 77018321 77018464 -205175200 + L2 LINE L2 2686 2840 -474 2331 119 0 0 chr1 77018727 77019038 -205174626 + AluSx SINE Alu 1 311 -1 957 167 109 21 chr1 77020242 77020434 -205173230 + MER3 DNA MER1_type 1 209 0 2275 80 37 20 chr1 77020592 77020892 -205172772 + AluY SINE Alu 1 305 -6 23 33 0 0 chr1 77022244 77022274 -205171390 + AT_rich Low_complexity Low_complexity 1 30 0 276 300 150 0 chr1 77022342 77022442 -205171222 + L2 LINE L2 3179 3293 -20 2163 111 76 38 chr1 77022455 77023014 -205170650 - MER4A LTR ERV1 -2 662 32 898 130 163 89 chr1 77023447 77023500 -205170164 + MER21A LTR ERV1 1 49 -882 4103 115 30 50 chr1 77023500 77023965 -205169699 + MER41B LTR ERV1 1 451 -184 1940 110 20 10 chr1 77023965 77024280 -205169384 + AluSx SINE Alu 1 312 0 4103 115 30 50 chr1 77024280 77024458 -205169206 + MER41B LTR ERV1 451 631 -4 898 130 163 89 chr1 77024458 77024650 -205169014 + MER21A LTR ERV1 49 264 -667 2234 142 113 83 chr1 77024655 77024681 -205168983 + MER21A LTR ERV1 376 400 -531 1829 170 7 7 chr1 77024681 77024987 -205168677 + AluSx SINE Alu 1 306 -6 2234 142 113 83 chr1 77024987 77025466 -205168198 + MER21A LTR ERV1 400 896 -35 1007 147 0 0 chr1 77025466 77025609 -205168055 - AluJb SINE Alu -169 143 1 396 0 0 0 chr1 77026294 77026338 -205167326 + (CA)n Simple_repeat Simple_repeat 1 44 0 2187 118 0 25 chr1 77026351 77026665 -205166999 + AluSx SINE Alu 1 306 -6 256 279 59 0 chr1 77026841 77026909 -205166755 + L1MC/D LINE L1 5730 5801 -2007 445 211 87 25 chr1 77026911 77027072 -205166592 - MER104 DNA Tc2 -4 176 6 946 161 60 83 chr1 77027112 77027330 -205166334 + AluJo SINE Alu 1 213 -99 2350 91 0 0 chr1 77027338 77027634 -205166030 - AluSg SINE Alu -13 297 2 22 0 0 0 chr1 77027646 77027668 -205165996 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 77027668 77027690 -205165974 + (TA)n Simple_repeat Simple_repeat 2 23 0 2005 112 27 24 chr1 77028177 77028473 -205165191 + AluSq SINE Alu 1 297 -16 1910 153 0 0 chr1 77030669 77030951 -205162713 + AluSx SINE Alu 12 293 -19 2260 96 7 3 chr1 77030952 77031253 -205162411 + AluSx SINE Alu 1 302 -10 575 161 86 0 chr1 77032706 77032799 -205160865 - AluSg/x SINE Alu -20 289 189 1077 126 31 0 chr1 77032821 77032980 -205160684 + AluSg/x SINE Alu 128 291 -19 226 204 56 0 chr1 77033072 77033126 -205160538 - MER58 DNA MER1_type -99 116 60 348 43 0 0 chr1 77033130 77033176 -205160488 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chr1 77034678 77034706 -205158958 + AT_rich Low_complexity Low_complexity 1 28 0 2271 106 3 3 chr1 77037109 77037410 -205156254 + AluSx SINE Alu 1 301 -11 1699 171 66 0 chr1 77037546 77037832 -205155832 - AluSx SINE Alu -7 305 1 298 341 32 24 chr1 77038309 77038432 -205155232 - L2 LINE L2 -8 3264 3141 243 238 139 60 chr1 77038562 77038713 -205154951 + MIR SINE MIR 93 255 -7 262 289 13 26 chr1 77039359 77039435 -205154229 + MER5A DNA MER1_type 81 155 -34 2035 136 7 7 chr1 77039754 77040055 -205153609 - AluJb SINE Alu -11 301 1 870 186 0 8 chr1 77040723 77040944 -205152720 + AluJb SINE Alu 2 290 -22 645 173 19 0 chr1 77040956 77041060 -205152604 + U6 snRNA snRNA 1 106 -1 673 213 31 0 chr1 77041087 77041214 -205152450 - MER2 DNA MER2_type -209 136 6 1774 195 7 7 chr1 77041246 77041553 -205152111 - AluSg SINE Alu -3 307 1 2310 89 10 3 chr1 77041714 77042017 -205151647 - AluSx SINE Alu -7 305 1 2027 136 3 7 chr1 77042217 77042518 -205151146 + AluSx SINE Alu 1 300 -12 1556 138 261 14 chr1 77042828 77043176 -205150488 + Tigger2a DNA MER2_type 1 434 0 225 300 154 0 chr1 77044929 77045039 -205148625 - MIR3 SINE MIR -33 175 49 1823 125 64 0 chr1 77045413 77045693 -205147971 + AluSx SINE Alu 1 298 -14 2228 84 17 0 chr1 77045978 77046276 -205147388 + AluSp SINE Alu 6 308 -5 2088 98 0 7 chr1 77046418 77046692 -205146972 + AluSx SINE Alu 1 272 -40 405 0 0 0 chr1 77047741 77047786 -205145878 + (CAAAA)n Simple_repeat Simple_repeat 3 47 0 1812 96 71 3 chr1 77047812 77048094 -205145570 + AluSq SINE Alu 1 301 -12 2031 144 3 0 chr1 77048104 77048409 -205145255 + AluSq SINE Alu 1 306 -7 995 111 0 15 chr1 77048680 77048815 -205144849 + FLAM_C SINE Alu 1 133 0 24 53 0 0 chr1 77049810 77049848 -205143816 + AT_rich Low_complexity Low_complexity 1 38 0 1127 205 78 26 chr1 77050638 77050906 -205142758 + AluJo SINE Alu 13 294 -18 24 53 0 0 chr1 77051277 77051315 -205142349 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr1 77051420 77051452 -205142212 + AT_rich Low_complexity Low_complexity 1 32 0 206 282 87 10 chr1 77056331 77056434 -205137230 - MIR SINE MIR -62 146 36 235 212 14 199 chr1 77057021 77057167 -205136497 - MIR SINE MIR -52 210 92 26 30 0 0 chr1 77057556 77057589 -205136075 + AT_rich Low_complexity Low_complexity 1 33 0 1359 122 0 54 chr1 77058071 77058293 -205135371 - AluSx SINE Alu -102 210 1 562 259 85 60 chr1 77058307 77058508 -205135156 - MIR SINE MIR -18 244 39 5145 159 25 7 chr1 77058910 77059881 -205133783 - L1MB7 LINE L1 -11 6173 5188 691 144 14 149 chr1 77059946 77060061 -205133603 - L1MB7 LINE L1 -945 5201 5072 1838 157 10 10 chr1 77060061 77060373 -205133291 - AluJb SINE Alu 0 312 1 691 144 14 149 chr1 77060373 77060465 -205133199 - L1MB7 LINE L1 -1074 5072 5023 2252 75 7 10 chr1 77060465 77060758 -205132906 + AluY SINE Alu 3 294 -17 691 144 14 149 chr1 77060758 77060771 -205132893 - L1MB7 LINE L1 -1123 5023 5010 2414 76 3 3 chr1 77060830 77061134 -205132530 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 77061243 77061264 -205132400 + AT_rich Low_complexity Low_complexity 1 21 0 519 325 142 13 chr1 77061378 77061695 -205131969 - L2 LINE L2 -9 3304 2947 1957 133 23 7 chr1 77061887 77062188 -205131476 + AluSq SINE Alu 1 306 -7 580 198 0 0 chr1 77062372 77062468 -205131196 - FLAM_A SINE Alu -9 133 38 184 294 20 0 chr1 77062677 77062728 -205130936 + MIR SINE MIR 210 261 -1 1212 151 18 18 chr1 77063146 77063371 -205130293 + L1MB8 LINE L1 5943 6167 -11 2227 119 3 0 chr1 77063462 77063773 -205129891 - AluSx SINE Alu 0 312 1 394 242 53 45 chr1 77063803 77064006 -205129658 - MIR SINE MIR -4 258 6 299 286 126 98 chr1 77064254 77064803 -205128861 + L2 LINE L2 2712 3272 0 752 281 51 24 chr1 77064882 77065135 -205128529 - MIR SINE MIR -1 261 2 605 247 46 23 chr1 77065434 77065608 -205128056 + MIR SINE MIR 72 249 -13 450 292 16 52 chr1 77066497 77066689 -205126975 + MIR SINE MIR 21 205 -57 854 209 103 77 chr1 77067588 77067693 -205125971 + MLT1G1 LTR MaLR 1 102 -440 681 160 0 8 chr1 77067693 77067818 -205125846 + L1MA8 LINE L1 6168 6291 0 2327 110 0 0 chr1 77067826 77068135 -205125529 + AluSx SINE Alu 3 311 -1 854 209 103 77 chr1 77068135 77068462 -205125202 + MLT1G1 LTR MaLR 108 379 -163 285 228 24 0 chr1 77068463 77068532 -205125132 - MER45 DNA AcHobo -1 1580 1505 25 31 0 0 chr1 77068628 77068660 -205125004 + AT_rich Low_complexity Low_complexity 1 32 0 585 200 26 9 chr1 77068688 77068803 -205124861 - MER45 DNA AcHobo -923 117 1 2336 76 0 20 chr1 77068853 77068991 -205124673 + AluSx SINE Alu 1 140 -172 2414 74 10 0 chr1 77068991 77069289 -205124375 + AluY SINE Alu 1 301 -10 2336 76 0 20 chr1 77069289 77069454 -205124210 + AluSx SINE Alu 140 298 -14 1375 103 0 0 chr1 77069456 77069641 -205124023 + AluSg/x SINE Alu 126 310 0 347 257 9 38 chr1 77069641 77069746 -205123918 + MLT1H1 LTR MaLR 454 555 0 1949 118 62 3 chr1 77070074 77070362 -205123302 + AluSq SINE Alu 2 306 -7 2090 123 0 13 chr1 77070375 77070685 -205122979 + AluSx SINE Alu 2 307 -5 1040 186 6 17 chr1 77070699 77070876 -205122788 + FAM SINE Alu 1 175 0 370 356 44 17 chr1 77070950 77071130 -205122534 + L3 LINE CR1 182 366 -1211 2219 106 3 0 chr1 77121492 77121863 -205071801 - AluSp SINE Alu 0 372 1 497 237 48 88 chr1 77122070 77122118 -205071546 + Charlie2 DNA MER1_type 2 50 -2732 1974 141 3 3 chr1 77122118 77122408 -205071256 - AluSx SINE Alu -22 290 1 497 237 48 88 chr1 77122408 77122608 -205071056 + Charlie2 DNA MER1_type 50 240 -2542 2224 124 0 0 chr1 77122793 77123099 -205070565 - AluSx SINE Alu -6 306 1 918 181 68 32 chr1 77123431 77123680 -205069984 - MER46C DNA MER2_type -2 336 79 2244 121 0 6 chr1 77123837 77124151 -205069513 + AluSx SINE Alu 1 312 0 443 208 0 0 chr1 77124172 77124244 -205069420 + Tigger4(Zombi) DNA MER2_type 1 72 -2659 1774 99 7 49 chr1 77124318 77124464 -205069200 + Tigger4(Zombi) DNA MER2_type 2458 2589 -142 2071 111 7 0 chr1 77124464 77124775 -205068889 + AluSg SINE Alu 1 313 0 1774 99 7 49 chr1 77124775 77124911 -205068753 + Tigger4(Zombi) DNA MER2_type 2589 2729 -2 206 290 0 0 chr1 77125421 77125483 -205068181 + MIR SINE MIR 81 142 -66 216 248 188 0 chr1 77125961 77126062 -205067602 + MIR SINE MIR 52 171 -91 633 281 105 27 chr1 77126068 77126363 -205067301 - L2 LINE L2 -4 3309 2992 325 277 11 0 chr1 77126370 77126464 -205067200 + MIR SINE MIR 166 260 -2 325 294 22 13 chr1 77126921 77127063 -205066601 - MIR SINE MIR -62 146 3 2457 66 0 25 chr1 77127196 77127515 -205066149 + AluY SINE Alu 1 311 0 23 0 0 0 chr1 77127539 77127562 -205066102 + AT_rich Low_complexity Low_complexity 1 23 0 554 110 0 37 chr1 77127562 77127644 -205066020 - AluJb SINE Alu -185 127 49 358 282 10 19 chr1 77127808 77127911 -205065753 - MIR SINE MIR -123 139 38 2232 103 14 0 chr1 77128026 77128318 -205065346 + AluSg1 SINE Alu 1 296 -13 1570 174 30 30 chr1 77128695 77129056 -205064608 + L1MDa LINE L1 2277 2637 -3903 344 171 4 42 chr1 77129057 77129107 -205064557 + AluJo SINE Alu 87 133 -169 191 36 36 0 chr1 77129107 77129135 -205064529 + (CAA)n Simple_repeat Simple_repeat 2 30 0 344 171 4 42 chr1 77129135 77129156 -205064508 + AluJo SINE Alu 133 153 -149 2216 246 35 53 chr1 77129168 77129689 -205063975 + L1MDa LINE L1 2631 3135 -3405 2058 64 8 0 chr1 77129689 77129940 -205063724 - AluY SINE Alu -2 309 57 2216 246 35 53 chr1 77129940 77130195 -205063469 + L1MDa LINE L1 3135 3393 -3147 187 213 43 0 chr1 77130766 77130813 -205062851 - L3b LINE CR1 -2 1581 1533 1818 131 42 11 chr1 77130894 77131177 -205062487 + AluJo SINE Alu 1 292 -20 420 228 118 16 chr1 77131443 77131570 -205062094 - Tigger8 DNA MER2_type -119 547 408 1997 113 33 0 chr1 77133294 77133588 -205060076 + AluSx SINE Alu 1 303 0 264 250 136 11 chr1 77134652 77134740 -205058924 + MIR SINE MIR 3 101 -161 342 278 64 46 chr1 77134751 77134924 -205058740 + MIR SINE MIR 37 212 -50 291 348 38 13 chr1 77135320 77135478 -205058186 + MIR3 SINE MIR 40 201 -7 786 194 0 15 chr1 77135534 77135668 -205057996 - FLAM_C SINE Alu -1 132 1 2204 97 38 0 chr1 77135821 77136109 -205057555 - AluSg SINE Alu -11 299 1 340 284 39 24 chr1 77136254 77136381 -205057283 + MIR SINE MIR 84 212 -50 804 309 91 63 chr1 77136954 77137672 -205055992 + L2 LINE L2 2144 2881 -433 485 203 0 42 chr1 77137672 77137790 -205055874 + MER5B DNA MER1_type 1 113 -65 411 304 24 106 chr1 77137828 77138206 -205055458 + L2 LINE L2 2917 3263 -9 208 188 146 0 chr1 77139070 77139118 -205054546 - MIR SINE MIR -8 254 200 1673 157 4 4 chr1 77139533 77139788 -205053876 + AluSx SINE Alu 1 255 -57 912 309 112 2 chr1 77139811 77140333 -205053331 - L2 LINE L2 -24 3289 2713 2434 97 0 0 chr1 77140532 77140841 -205052823 + AluSx SINE Alu 1 309 -3 2693 19 0 0 chr1 77141451 77141758 -205051906 - L1PA3 LINE L1 -251 5904 5598 * 5922 32 0 0 chr1 77141746 77142468 -205051196 - L1P LINE L1 -2771 3375 2654 17067 40 3 4 chr1 77142468 77144541 -205049123 + L1P LINE L1 580 2650 -3496 255 284 30 15 chr1 77144543 77144610 -205049054 - L2 LINE L2 -608 2706 2639 379 69 17 35 chr1 77144730 77144743 -205048921 + AluY SINE Alu 121 133 -168 2076 117 3 26 chr1 77144743 77145052 -205048612 + AluSp SINE Alu 1 291 -22 379 69 17 35 chr1 77145052 77145096 -205048568 + AluY SINE Alu 133 177 -124 368 233 11 0 chr1 77145098 77145188 -205048476 + L1MA10 LINE L1 6235 6325 -9 320 164 15 0 chr1 77145189 77145256 -205048408 + GA-rich Low_complexity Low_complexity 3 70 0 685 255 19 170 chr1 77145715 77146045 -205047619 - L2 LINE L2 -660 2654 2276 286 122 0 0 chr1 77146045 77146094 -205047570 - Alu SINE Alu -4 296 248 1524 100 166 15 chr1 77146094 77146353 -205047311 - AluSq SINE Alu -15 298 1 685 255 19 170 chr1 77146353 77146562 -205047102 - L2 LINE L2 -1036 2278 2155 301 253 121 22 chr1 77147325 77147416 -205046248 - L1MC4 LINE L1 -1339 6703 6604 204 40 0 0 chr1 77147694 77147719 -205045945 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 198 321 102 29 chr1 77147746 77147883 -205045781 - L2 LINE L2 -211 3061 2915 800 163 0 15 chr1 77148039 77148174 -205045490 - FLAM_C SINE Alu 0 133 1 224 419 8 0 chr1 77148214 77148338 -205045326 - L2 LINE L2 -557 2757 2633 618 235 60 40 chr1 77148350 77148652 -205045012 + L1ME4a LINE L1 5812 6119 -2 1968 109 0 0 chr1 77148656 77148923 -205044741 + AluSx SINE Alu 1 267 -45 27 0 0 0 chr1 77148923 77148950 -205044714 + AT_rich Low_complexity Low_complexity 1 27 0 1872 164 0 0 chr1 77148954 77149246 -205044418 + AluJb SINE Alu 5 296 -16 276 183 0 50 chr1 77149725 77149785 -205043879 - L2 LINE L2 -2 3311 3255 2094 120 0 0 chr1 77149806 77150106 -205043558 + AluSx SINE Alu 1 300 -12 286 260 63 71 chr1 77150194 77150321 -205043343 + L2 LINE L2 3183 3308 -5 543 383 27 36 chr1 77150326 77150655 -205043009 + L2 LINE L2 2935 3260 -12 509 168 229 8 chr1 77150659 77150674 -205042990 - L1MA10 LINE L1 0 6334 6320 1524 214 81 51 chr1 77150674 77151145 -205042519 - L1ME1 LINE L1 -5 6161 5677 822 103 0 0 chr1 77151145 77151252 -205042412 - U6 snRNA snRNA 0 107 1 279 275 303 0 chr1 77151485 77151594 -205042070 - L2 LINE L2 -4 3268 3127 748 167 0 29 chr1 77151618 77151756 -205041908 - MLT1B LTR MaLR 0 390 257 1275 151 155 26 chr1 77151837 77152141 -205041523 - MLT1C LTR MaLR -123 344 2 195 333 0 73 chr1 77152224 77152320 -205041344 - L2 LINE L2 -221 3051 2963 315 248 47 78 chr1 77152890 77152929 -205040735 + MER5B DNA MER1_type 27 66 -112 2026 103 14 0 chr1 77152929 77153219 -205040445 + AluSp SINE Alu 1 294 -19 315 248 47 78 chr1 77153219 77153308 -205040356 + MER5B DNA MER1_type 66 151 -27 282 73 0 0 chr1 77153406 77153447 -205040217 + (TC)n Simple_repeat Simple_repeat 1 41 0 2150 115 0 0 chr1 77153536 77153840 -205039824 - AluSx SINE Alu -8 304 1 289 295 84 24 chr1 77153919 77154085 -205039579 + MER104 DNA Tc2 1 176 -4 210 180 31 6 chr1 77154209 77154261 -205039403 - MIR SINE MIR -119 89 37 256 373 70 43 chr1 77154323 77154508 -205039156 + L2 LINE L2 2440 2629 -685 1852 158 0 10 chr1 77154585 77154895 -205038769 + AluJb SINE Alu 1 307 -5 40 0 0 0 chr1 77154895 77154935 -205038729 + AT_rich Low_complexity Low_complexity 1 40 0 698 251 79 5 chr1 77154945 77155148 -205038516 + MER102a DNA MER1_type 110 327 -3 1548 187 24 0 chr1 77155259 77155548 -205038116 - AluJo SINE Alu -16 296 1 1451 135 0 25 chr1 77155850 77156095 -205037569 - AluJb SINE Alu -6 306 68 229 125 0 0 chr1 77156095 77156127 -205037537 - AluJb SINE Alu -268 32 1 1471 185 0 11 chr1 77156472 77156748 -205036916 - AluJo SINE Alu -8 304 32 320 281 32 91 chr1 77156994 77157215 -205036449 - L2 LINE L2 0 3313 3106 366 320 40 36 chr1 77157243 77157468 -205036196 + MIR SINE MIR 31 256 -6 1820 135 7 14 chr1 77157605 77157927 -205035737 + AluSx SINE Alu 2 321 0 2099 113 7 0 chr1 77158152 77158453 -205035211 + AluSx SINE Alu 2 304 -8 309 277 10 50 chr1 77158580 77158681 -205034983 - L2 LINE L2 -5 3267 3171 1979 120 3 43 chr1 77158992 77159339 -205034325 + AluSx SINE Alu 1 312 0 254 252 28 84 chr1 77159569 77159676 -205033988 + MIR SINE MIR 162 262 0 236 261 116 0 chr1 77159672 77159741 -205033923 - MIR SINE MIR -105 157 81 * 312 170 19 0 chr1 77160507 77160560 -205033104 + MIR SINE MIR 90 143 -119 1619 151 0 0 chr1 77160567 77160825 -205032839 + AluSx SINE Alu 1 258 -54 23 0 0 0 chr1 77160829 77160852 -205032812 + AT_rich Low_complexity Low_complexity 1 23 0 186 167 0 0 chr1 77160916 77160946 -205032718 + MIR SINE MIR 218 247 -15 2314 80 3 3 chr1 77160977 77161288 -205032376 + AluSp SINE Alu 1 311 -2 250 338 57 62 chr1 77161316 77161526 -205032138 + MIR SINE MIR 48 256 -6 2157 105 0 20 chr1 77161822 77162126 -205031538 - AluSx SINE Alu -14 298 1 412 315 48 7 chr1 77162140 77162286 -205031378 - L2 LINE L2 0 3313 3162 2282 74 0 7 chr1 77162456 77162755 -205030909 - AluY SINE Alu -12 299 3 220 290 168 28 chr1 77162937 77163044 -205030620 - MIR SINE MIR 0 262 141 2297 181 36 34 chr1 77163125 77163627 -205030037 + MLT1D LTR MaLR 1 503 -2 1962 126 0 0 chr1 77163742 77164020 -205029644 + AluSx SINE Alu 1 278 -34 288 0 0 0 chr1 77164022 77164054 -205029610 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 273 376 79 6 chr1 77164266 77164444 -205029220 - L2 LINE L2 -557 2757 2567 2181 112 0 0 chr1 77164498 77164803 -205028861 - AluSx SINE Alu -7 305 1 771 233 13 0 chr1 77164809 77164968 -205028696 - AluJb SINE Alu -15 297 137 1289 181 199 29 chr1 77164989 77165160 -205028504 + Charlie1b DNA MER1_type 1 142 -2619 2228 86 16 0 chr1 77165160 77165464 -205028200 - AluSg SINE Alu -1 309 1 1289 181 199 29 chr1 77165464 77165739 -205027925 + Charlie1b DNA MER1_type 142 523 0 239 252 180 50 chr1 77166100 77166239 -205027425 + MIR3 SINE MIR 46 202 -6 635 245 75 0 chr1 77166482 77166641 -205027023 - MIR SINE MIR -58 204 34 318 259 241 74 chr1 77166669 77166774 -205026890 - MIR SINE MIR 0 262 176 2060 114 0 3 chr1 77166774 77167072 -205026592 - AluSg SINE Alu -13 297 1 318 259 241 74 chr1 77167072 77167182 -205026482 - MIR SINE MIR -86 176 11 902 274 8 34 chr1 77167281 77167515 -205026149 - MIR SINE MIR -31 231 4 1594 165 23 30 chr1 77167717 77168020 -205025644 + AluJb SINE Alu 1 301 -11 181 301 65 65 chr1 77168713 77168836 -205024828 - L2 LINE L2 -1120 2194 2072 380 286 11 65 chr1 77169868 77170096 -205023568 + L1ME3A LINE L1 5327 5513 -651 2396 50 0 7 chr1 77170096 77170395 -205023269 + AluY SINE Alu 5 301 -10 380 286 11 65 chr1 77170395 77170426 -205023238 + L1ME3A LINE L1 5513 5544 -620 1163 186 83 28 chr1 77170442 77170695 -205022969 + AluJo SINE Alu 1 267 -45 813 83 37 0 chr1 77170972 77171080 -205022584 + MLT1A2 LTR MaLR 263 374 0 643 251 89 115 chr1 77171080 77171542 -205022122 + L1ME3A LINE L1 5721 6170 0 207 69 0 0 chr1 77171639 77171668 -205021996 + (TG)n Simple_repeat Simple_repeat 2 30 0 997 298 80 36 chr1 77171708 77172044 -205021620 + HAL1 LINE L1 162 512 -1995 655 218 82 41 chr1 77172214 77172434 -205021230 + HAL1 LINE L1 584 812 -1695 2272 101 0 3 chr1 77172434 77172741 -205020923 - AluSg SINE Alu -4 306 1 269 240 10 62 chr1 77172823 77172919 -205020745 - L1MC5 LINE L1 -48 7913 7823 774 136 0 0 chr1 77172961 77173071 -205020593 + FLAM_C SINE Alu 2 111 -32 246 32 0 0 chr1 77173082 77173113 -205020551 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 770 190 84 49 chr1 77173118 77173402 -205020262 - L1MC5 LINE L1 -169 7792 7499 225 83 0 0 chr1 77173411 77173447 -205020217 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1650 188 0 0 chr1 77173449 77173731 -205019933 - AluJb SINE Alu -30 282 1 22 35 0 0 chr1 77174115 77174144 -205019520 + AT_rich Low_complexity Low_complexity 1 29 0 2866 79 0 0 chr1 77174581 77174936 -205018728 + THE1A LTR MaLR 1 355 0 2038 130 7 0 chr1 77174989 77175288 -205018376 - AluSx SINE Alu -11 301 1 2121 125 3 0 chr1 77175792 77176103 -205017561 - AluSx SINE Alu 0 312 1 2322 156 5 55 chr1 77176147 77176197 -205017467 - Tigger2a DNA MER2_type -2294 414 363 2197 111 0 3 chr1 77176197 77176504 -205017160 - AluSq SINE Alu -7 306 1 1815 150 17 17 chr1 77176507 77176801 -205016863 - AluSx SINE Alu -18 294 1 2322 156 5 55 chr1 77176801 77177182 -205016482 - Tigger2a DNA MER2_type -2347 361 1 183 136 15 30 chr1 77177267 77177321 -205016343 + (TAAA)n Simple_repeat Simple_repeat 3 57 -10 2079 112 3 20 chr1 77177321 77177624 -205016040 + AluSg SINE Alu 1 298 -12 183 136 15 30 chr1 77177624 77177635 -205016029 + (TAAA)n Simple_repeat Simple_repeat 57 67 0 286 196 217 43 chr1 77177636 77177728 -205015936 + LTR9 LTR ERV1 53 160 -452 26 0 0 0 chr1 77177839 77177865 -205015799 + AT_rich Low_complexity Low_complexity 1 26 0 1122 122 0 0 chr1 77177865 77178021 -205015643 - AluSc SINE Alu -24 285 130 1888 119 11 3 chr1 77178033 77178319 -205015345 - AluSx SINE Alu -19 293 6 1965 124 10 0 chr1 77178330 77178629 -205015035 - AluSp SINE Alu -11 302 1 359 230 50 105 chr1 77178630 77178812 -205014852 + LTR9B LTR ERV1 135 305 -339 6342 59 155 65 chr1 77178812 77179887 -205013777 + MER11A LTR ERVK 1 1266 0 1046 269 12 37 chr1 77179887 77180211 -205013453 + LTR9 LTR ERV1 297 612 0 341 187 0 122 chr1 77180217 77180324 -205013340 - L1MC5 LINE L1 -739 7222 7129 416 278 72 50 chr1 77180380 77180778 -205012886 - HAL1b LINE L1 -786 562 216 1212 227 30 42 chr1 77180801 77181136 -205012528 + MER4B-int LTR ERV1 1966 2296 -4035 440 226 0 2 chr1 77181120 77181211 -205012453 + MER4B-int LTR ERV1 2646 2722 -3224 * 378 185 0 0 chr1 77181242 77181307 -205012357 + MER34C LTR ERV1 160 224 -361 443 173 27 157 chr1 77181374 77181559 -205012105 + MER4B-int LTR ERV1 1190 1350 -3773 880 167 0 0 chr1 77181630 77181768 -205011896 - AluJb SINE Alu -27 285 148 298 98 24 0 chr1 77181831 77181872 -205011792 - FLAM SINE Alu -7 126 85 1897 134 10 0 chr1 77181882 77182181 -205011483 - AluSg SINE Alu -8 302 1 2194 181 30 31 chr1 77182182 77182969 -205010695 + MER4B-int LTR ERV1 2608 3342 -1922 * 4765 136 26 57 chr1 77182953 77183417 -205010247 + MER4B-int LTR ERV1 4566 4610 -1721 4617 127 14 14 chr1 77183417 77184108 -205009556 + LTR8 LTR ERV1 1 691 0 4765 136 26 57 chr1 77184108 77184644 -205009020 + MER4B-int LTR ERV1 4610 5161 -1170 1433 108 37 5 chr1 77184644 77184858 -205008806 + AluSq SINE Alu 1 221 -92 417 331 0 38 chr1 77184871 77185055 -205008609 + CT-rich Low_complexity Low_complexity 4 180 0 514 298 8 0 chr1 77185160 77185291 -205008373 + L2 LINE L2 3181 3312 -1 226 370 60 0 chr1 77185429 77185529 -205008135 - L2 LINE L2 -25 3247 3142 260 286 70 21 chr1 77185968 77186110 -205007554 + MIR SINE MIR 3 154 -63 217 200 44 0 chr1 77186344 77186389 -205007275 + L2 LINE L2 3264 3310 -3 1103 123 0 12 chr1 77186455 77186625 -205007039 - AluJb SINE Alu -63 249 82 886 326 54 6 chr1 77186664 77187017 -205006647 + LTR16A LTR ERVL 81 450 0 1476 156 39 12 chr1 77187083 77187339 -205006325 + AluJo SINE Alu 1 263 -49 2808 77 3 3 chr1 77187438 77187791 -205005873 + THE1A LTR MaLR 1 353 -2 1981 121 7 0 chr1 77187818 77188115 -205005549 + AluSq SINE Alu 1 299 -14 256 316 259 0 chr1 77188142 77188300 -205005364 - L2 LINE L2 -204 3068 2870 225 0 0 0 chr1 77188437 77188462 -205005202 + (TC)n Simple_repeat Simple_repeat 2 26 0 204 125 0 0 chr1 77189288 77189320 -205004344 + (TG)n Simple_repeat Simple_repeat 2 33 0 335 222 51 114 chr1 77189508 77189684 -205003980 + L2 LINE L2 2949 3113 -159 262 239 119 0 chr1 77189748 77189815 -205003849 - MER112 DNA MER1_type -8 252 178 288 53 0 0 chr1 77189951 77189989 -205003675 + (TG)n Simple_repeat Simple_repeat 1 38 0 2222 78 3 0 chr1 77190085 77190368 -205003296 - AluSx SINE Alu -16 296 13 278 316 94 41 chr1 77190428 77190599 -205003065 - MIR SINE MIR -46 216 37 627 330 92 43 chr1 77190714 77191180 -205002484 + L3 LINE CR1 838 1326 -251 324 217 123 22 chr1 77191499 77191637 -205002027 + MLT1K LTR MaLR 363 514 -74 954 273 131 0 chr1 77191660 77192004 -205001660 - LTR16A LTR ERVL -46 404 16 739 176 71 77 chr1 77192113 77192295 -205001369 + L3 LINE CR1 1368 1548 -29 375 237 130 50 chr1 77192982 77193143 -205000521 + MIR3 SINE MIR 8 179 -60 259 298 74 8 chr1 77193182 77193303 -205000361 - MIR SINE MIR -28 234 106 2311 80 0 0 chr1 77193502 77193804 -204999860 + AluSc SINE Alu 1 302 -7 1557 167 0 8 chr1 77193916 77194179 -204999485 - AluJo SINE Alu -51 261 1 1817 143 44 0 chr1 77195797 77196091 -204997573 + AluSx SINE Alu 1 307 -5 657 262 12 12 chr1 77196150 77196314 -204997350 - MIR SINE MIR -77 185 22 205 211 79 0 chr1 77196331 77196369 -204997295 + MER5B DNA MER1_type 6 46 -132 189 0 0 0 chr1 77196369 77196390 -204997274 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 1628 169 9 19 chr1 77196392 77196712 -204996952 + L1MC3 LINE L1 7469 7785 0 289 229 92 64 chr1 77196724 77196833 -204996831 - MER5B DNA MER1_type -49 129 18 1972 124 0 0 chr1 77196835 77197118 -204996546 + AluSq SINE Alu 1 283 -30 448 295 39 8 chr1 77197165 77197294 -204996370 + L2 LINE L2 3138 3270 -2 189 0 0 0 chr1 77197303 77197324 -204996340 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 287 312 2 47 chr1 77197539 77197645 -204996019 + MIR SINE MIR 15 115 -112 780 252 24 24 chr1 77198063 77198273 -204995391 - MIR SINE MIR -41 221 12 283 242 305 0 chr1 77198358 77198453 -204995211 + MIR SINE MIR 77 200 -62 324 0 0 0 chr1 77198659 77198695 -204994969 + (TG)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr1 77198694 77198718 -204994946 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 255 283 0 0 chr1 77198968 77199028 -204994636 - MIR SINE MIR -145 117 58 328 307 45 67 chr1 77199338 77199517 -204994147 + MIR3 SINE MIR 16 190 -18 833 218 151 78 chr1 77200526 77200758 -204992906 - MLT1I LTR MaLR 0 409 144 2292 107 0 0 chr1 77200758 77201068 -204992596 - AluSx SINE Alu -2 310 1 833 218 151 78 chr1 77201068 77201166 -204992498 - MLT1I LTR MaLR -265 144 55 220 239 211 14 chr1 77201174 77201245 -204992419 + MIR SINE MIR 67 151 -57 200 94 31 0 chr1 77201258 77201290 -204992374 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 954 196 21 75 chr1 77201305 77201545 -204992119 + MIR SINE MIR 15 241 -21 420 247 295 58 chr1 77201751 77201941 -204991723 - MIR SINE MIR -8 254 20 574 188 0 10 chr1 77202113 77202209 -204991455 + AluJ/FLAM SINE Alu 2 96 -216 1506 149 119 73 chr1 77202336 77202495 -204991169 + LTR49-int LTR ERV1 4427 4577 -546 2162 127 0 0 chr1 77202495 77202802 -204990862 - AluSx SINE Alu -5 307 1 1506 149 119 73 chr1 77202802 77203010 -204990654 + LTR49-int LTR ERV1 4577 4774 -349 234 0 0 0 chr1 77203010 77203036 -204990628 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 369 0 0 0 chr1 77203040 77203081 -204990583 + (TG)n Simple_repeat Simple_repeat 1 41 0 1506 149 119 73 chr1 77203081 77203095 -204990569 + LTR49-int LTR ERV1 4776 4682 -441 2280 89 0 0 chr1 77203095 77203387 -204990277 + AluSg SINE Alu 1 292 -18 1506 149 119 73 chr1 77203387 77203456 -204990208 + LTR49-int LTR ERV1 4681 4745 -378 186 71 0 0 chr1 77203465 77203493 -204990171 + (TC)n Simple_repeat Simple_repeat 1 28 0 981 161 12 0 chr1 77203493 77203655 -204990009 - AluSg/x SINE Alu -14 296 133 1299 202 6 35 chr1 77203676 77203993 -204989671 - AluJo SINE Alu -4 308 1 1358 163 12 40 chr1 77204033 77204285 -204989379 - AluSx SINE Alu -21 291 47 1911 117 0 0 chr1 77204319 77204585 -204989079 - AluSq SINE Alu -47 266 1 996 192 15 92 chr1 77204585 77204834 -204988830 + LTR49-int LTR ERV1 5840 6070 -688 1051 153 10 9 chr1 77204840 77205097 -204988567 + LTR47A LTR ERVL 2 308 -144 233 100 0 100 chr1 77205098 77205138 -204988526 + LTR47A LTR ERVL 417 452 0 327 104 0 0 chr1 77205182 77205230 -204988434 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1773 164 10 3 chr1 77205230 77205534 -204988130 - AluSq SINE Alu -7 306 1 256 194 41 82 chr1 77206043 77206141 -204987523 + L1MB8 LINE L1 6075 6168 -10 703 142 0 33 chr1 77206141 77206261 -204987403 - FLAM_C SINE Alu -16 117 2 490 303 161 9 chr1 77206646 77206857 -204986807 + MIR SINE MIR 12 254 -8 196 335 113 21 chr1 77207493 77207821 -204985843 + L2 LINE L2 2295 2652 -662 1184 198 0 0 chr1 77207868 77208080 -204985584 - AluJo SINE Alu -14 298 87 455 275 40 27 chr1 77208386 77208535 -204985129 - MIR SINE MIR -109 153 3 1724 158 3 3 chr1 77208758 77209050 -204984614 + AluJb SINE Alu 1 292 -20 975 118 6 22 chr1 77209199 77209377 -204984287 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 186 133 0 0 chr1 77209379 77209409 -204984255 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 2471 37 0 7 chr1 77209483 77209782 -204983882 - AluY SINE Alu -14 297 1 254 210 65 0 chr1 77209988 77210050 -204983614 + CT-rich Low_complexity Low_complexity 2 67 0 250 313 71 0 chr1 77210051 77210150 -204983514 - L2 LINE L2 -14 3299 3194 884 271 24 20 chr1 77210155 77210406 -204983258 + MIR SINE MIR 11 262 0 1723 131 61 17 chr1 77210850 77211147 -204982517 - AluJo SINE Alu -2 310 1 516 68 0 14 chr1 77211371 77211445 -204982219 - MER41B LTR ERV1 -86 549 477 1245 108 70 5 chr1 77211754 77211939 -204981725 + MER30 DNA MER1_type 1 197 -33 243 159 0 0 chr1 77212107 77212151 -204981513 + MLT1C LTR MaLR 65 108 -359 374 260 58 10 chr1 77212164 77212268 -204981396 + MIR SINE MIR 54 162 -100 2124 108 3 7 chr1 77212306 77212611 -204981053 - AluSx SINE Alu -8 304 1 701 244 14 106 chr1 77212633 77212916 -204980748 + MER46C DNA MER2_type 80 336 -2 192 328 69 0 chr1 77213111 77213169 -204980495 + L2 LINE L2 3123 3184 -88 1156 127 0 0 chr1 77213217 77213390 -204980274 + AluSp SINE Alu 129 301 -12 254 262 24 87 chr1 77213564 77213625 -204980039 - MER94 DNA DNA -15 119 69 2910 62 3 41 chr1 77213625 77213696 -204979968 - THE1C LTR MaLR 0 375 303 2140 119 3 0 chr1 77213696 77213999 -204979665 - AluSx SINE Alu -8 304 1 2910 62 3 41 chr1 77213999 77214317 -204979347 - THE1C LTR MaLR -72 303 1 254 262 24 87 chr1 77214317 77214381 -204979283 - MER94 DNA DNA -65 69 2 530 296 20 35 chr1 77214545 77214630 -204979034 + MIR SINE MIR 7 92 -170 1455 202 160 38 chr1 77214630 77215080 -204978584 + MLT1D LTR MaLR 1 505 0 530 296 20 35 chr1 77215080 77215193 -204978471 + MIR SINE MIR 92 202 -60 204 267 0 67 chr1 77215466 77215541 -204978123 + MIR3 SINE MIR 5 74 -134 * 240 309 12 86 chr1 77215539 77215701 -204977963 + MIR SINE MIR 107 256 -6 1970 116 0 14 chr1 77215718 77216011 -204977653 - AluSx SINE Alu -23 289 1 303 153 203 0 chr1 77216065 77216124 -204977540 - L2 LINE L2 0 3272 3202 26 0 0 0 chr1 77216257 77216283 -204977381 + AT_rich Low_complexity Low_complexity 1 26 0 263 119 119 51 chr1 77216482 77216541 -204977123 + L1ME4a LINE L1 5955 6017 -104 2421 75 0 0 chr1 77216581 77216888 -204976776 - AluY SINE Alu -4 307 1 2247 99 3 6 chr1 77216889 77217203 -204976461 - AluSp SINE Alu 0 313 1 210 276 13 125 chr1 77217648 77217800 -204975864 - MIR SINE MIR -40 222 88 186 133 0 0 chr1 77217960 77217990 -204975674 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 981 182 0 0 chr1 77218536 77218712 -204974952 - AluSg/x SINE Alu 0 310 135 431 221 37 15 chr1 77218721 77218857 -204974807 - L1MC5 LINE L1 -34 7927 7789 282 292 244 6 chr1 77219088 77219256 -204974408 - MIR SINE MIR -48 214 7 1547 160 7 48 chr1 77219524 77219866 -204973798 + AluJo SINE Alu 1 330 0 411 174 51 31 chr1 77221322 77221420 -204972244 + MIR3 SINE MIR 105 204 -4 2232 109 0 0 chr1 77221704 77222007 -204971657 + AluSg SINE Alu 1 303 -7 2134 95 7 0 chr1 77222014 77222309 -204971355 + AluSx SINE Alu 1 297 -15 1429 191 21 14 chr1 77222440 77222723 -204970941 - AluJo SINE Alu -27 285 1 290 268 20 56 chr1 77222853 77222949 -204970715 + MIR SINE MIR 23 114 -134 2202 101 0 3 chr1 77222949 77223256 -204970408 - AluSc SINE Alu -3 306 1 290 268 20 56 chr1 77223256 77223298 -204970366 + MIR SINE MIR 114 156 -92 299 139 151 58 chr1 77223337 77223423 -204970241 - L2 LINE L2 -5 3308 3215 562 62 0 0 chr1 77223427 77223508 -204970156 - Alu SINE Alu 0 311 231 473 258 14 41 chr1 77223519 77223726 -204969938 - L2 LINE L2 -350 2963 2693 245 128 0 0 chr1 77223974 77224013 -204969651 - MIR SINE MIR -3 259 221 736 273 11 6 chr1 77224245 77224421 -204969243 + MIR SINE MIR 29 205 -57 2189 97 3 3 chr1 77224611 77224963 -204968701 - AluSq SINE Alu 0 352 1 539 264 18 24 chr1 77225198 77225365 -204968299 - MIR3 SINE MIR -13 195 30 2076 124 0 0 chr1 77225454 77225760 -204967904 - AluSx SINE Alu -6 306 1 1609 170 3 3 chr1 77225763 77226052 -204967612 - AluJo SINE Alu -5 307 19 2007 139 0 0 chr1 77226117 77226427 -204967237 + AluSx SINE Alu 1 310 -2 1348 153 88 0 chr1 77226444 77226727 -204966937 - MER33 DNA MER1_type -28 296 1 2273 98 0 10 chr1 77226750 77227057 -204966607 - AluSx SINE Alu -8 304 1 627 261 112 61 chr1 77227233 77227528 -204966136 - L2 LINE L2 -2 3311 3002 298 379 8 0 chr1 77227858 77227990 -204965674 + L1ME LINE L1 5509 5641 -480 1743 176 0 3 chr1 77228048 77228350 -204965314 + AluJo SINE Alu 1 301 -11 1510 185 5 60 chr1 77228460 77228589 -204965075 + L1MB8 LINE L1 4930 5064 -1082 1604 169 38 10 chr1 77228589 77228879 -204964785 + AluJb SINE Alu 3 300 -12 1510 185 5 60 chr1 77228879 77229117 -204964547 + L1MB8 LINE L1 5064 5277 -869 1737 129 32 82 chr1 77229123 77229171 -204964493 - Tigger3(Golem) DNA MER2_type -2696 333 284 1588 154 6 58 chr1 77229171 77229319 -204964345 + AluJb SINE Alu 1 126 -186 2184 76 3 54 chr1 77229319 77229634 -204964030 + AluY SINE Alu 2 300 -11 1588 154 6 58 chr1 77229634 77229796 -204963868 + AluJb SINE Alu 126 295 -17 1737 129 32 82 chr1 77229796 77230087 -204963577 - Tigger3(Golem) DNA MER2_type -2745 284 11 1308 179 4 27 chr1 77230093 77230356 -204963308 + L1MB8 LINE L1 5910 6166 -12 568 326 68 37 chr1 77231351 77231604 -204962060 + L3 LINE CR1 1108 1375 -202 1493 154 81 0 chr1 77231604 77231876 -204961788 - AluJb SINE Alu -18 294 1 568 326 68 37 chr1 77231876 77231944 -204961720 + L3 LINE CR1 1375 1439 -138 600 227 13 27 chr1 77232010 77232160 -204961504 - MIR SINE MIR -9 253 106 806 147 16 0 chr1 77232163 77232292 -204961372 + FLAM_A SINE Alu 12 142 0 413 232 200 0 chr1 77232293 77232388 -204961276 - MIR SINE MIR -142 120 7 1887 169 0 3 chr1 77232799 77233112 -204960552 - AluJb SINE Alu 0 312 1 2416 56 0 10 chr1 77233659 77233964 -204959700 - AluY SINE Alu -9 302 1 1914 234 106 2 chr1 77234319 77234810 -204958854 + MLT1F LTR MaLR 1 542 0 670 193 267 23 chr1 77234902 77235078 -204958586 + MER58A DNA MER1_type 6 224 0 255 275 101 9 chr1 77235171 77235280 -204958384 + L2 LINE L2 2941 3059 -213 355 229 134 32 chr1 77235492 77235649 -204958015 - L2 LINE L2 -1 3312 3140 428 253 82 24 chr1 77235711 77235881 -204957783 - MIR SINE MIR -9 253 74 2188 111 0 9 chr1 77236402 77236717 -204956947 + AluSx SINE Alu 1 312 0 414 255 120 73 chr1 77237177 77237545 -204956119 - L2 LINE L2 -3 3310 2926 1967 144 0 0 chr1 77237801 77238099 -204955565 + AluSx SINE Alu 1 298 -14 885 237 40 26 chr1 77238189 77238417 -204955247 + MIR SINE MIR 32 262 0 305 336 69 0 chr1 77238550 77238681 -204954983 - MIR SINE MIR -32 230 91 286 234 47 0 chr1 77238699 77238763 -204954901 - MER5A DNA MER1_type -59 130 64 1992 104 25 0 chr1 77238837 77239138 -204954526 + AluSq SINE Alu 1 308 0 432 207 23 0 chr1 77239141 77239228 -204954436 - AluJo/FLAM SINE Alu -196 116 28 373 150 0 0 chr1 77239329 77239389 -204954275 + Alu SINE Alu 240 299 -3 1938 114 40 0 chr1 77239485 77239782 -204953882 - AluSx SINE Alu -2 310 2 639 307 48 13 chr1 77240520 77240748 -204952916 - MIR SINE MIR -1 261 26 475 286 165 0 chr1 77241420 77241626 -204952038 + MIR SINE MIR 5 244 -18 535 282 79 52 chr1 77241683 77241988 -204951676 - L2 LINE L2 -31 3241 2929 253 282 65 40 chr1 77242022 77242186 -204951478 + MIR3 SINE MIR 7 172 -66 191 206 0 0 chr1 77242326 77242360 -204951304 - MIR SINE MIR -20 242 209 226 167 0 0 chr1 77242448 77242484 -204951180 + MER81 DNA DNA 77 112 -2 236 243 14 29 chr1 77242515 77242585 -204951079 - MIR SINE MIR -188 74 6 257 339 58 26 chr1 77244150 77244339 -204949325 + L2 LINE L2 2579 2773 -541 2211 96 3 0 chr1 77244386 77244679 -204948985 - AluSg SINE Alu -16 294 1 363 326 57 7 chr1 77244876 77245017 -204948647 + L2 LINE L2 3112 3259 -13 654 293 22 11 chr1 77245386 77245567 -204948097 - MIR SINE MIR -64 198 16 275 220 22 55 chr1 77246597 77246688 -204946976 - L1ME4a LINE L1 -56 6065 5978 457 269 13 32 chr1 77246804 77246822 -204946842 - L1MA10 LINE L1 0 6334 6027 1602 172 45 21 chr1 77246822 77247112 -204946552 + AluJo SINE Alu 1 297 -15 874 233 30 0 chr1 77247112 77247314 -204946350 - L1ME1 LINE L1 -6 6160 5953 227 288 30 0 chr1 77247461 77247527 -204946137 - L1P5 LINE L1 -484 5667 5600 333 215 91 33 chr1 77247544 77247665 -204945999 + MIR SINE MIR 91 218 -44 456 321 36 5 chr1 77247733 77247926 -204945738 + MIR SINE MIR 49 247 -15 539 261 0 14 chr1 77247938 77248080 -204945584 - LTR67 LTR ERVL 0 557 418 345 24 0 0 chr1 77248708 77248750 -204944914 + (TG)n Simple_repeat Simple_repeat 2 43 0 309 317 17 17 chr1 77249075 77249195 -204944469 - MIR SINE MIR -129 133 14 421 261 39 103 chr1 77249692 77249926 -204943738 - L1MC4a LINE L1 -1893 5915 5697 339 329 154 0 chr1 77250148 77250291 -204943373 + L2 LINE L2 3100 3264 -8 195 100 0 0 chr1 77250352 77250382 -204943282 + (TC)n Simple_repeat Simple_repeat 1 30 0 1780 133 74 87 chr1 77250532 77250922 -204942742 - MLT1B LTR MaLR 0 390 6 189 74 0 0 chr1 77251778 77251805 -204941859 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 902 246 119 33 chr1 77251805 77252200 -204941464 - L2 LINE L2 -13 3300 2872 207 0 0 0 chr1 77252259 77252282 -204941382 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 529 201 29 171 chr1 77252289 77252421 -204941243 - MIR SINE MIR -13 249 164 2166 97 3 33 chr1 77252421 77252720 -204940944 - AluSg SINE Alu -20 290 1 529 201 29 171 chr1 77252720 77252826 -204940838 - MIR SINE MIR -98 164 45 256 250 23 11 chr1 77252948 77253036 -204940628 - L2 LINE L2 0 3313 3225 448 283 44 22 chr1 77254473 77254653 -204939011 + MIR SINE MIR 79 262 0 353 151 0 0 chr1 77254914 77254967 -204938697 + MER3 DNA MER1_type 1 53 -156 220 203 14 27 chr1 77254994 77255068 -204938596 + (TTAAA)n Simple_repeat Simple_repeat 4 76 0 521 319 80 48 chr1 77256205 77256857 -204936807 + L2 LINE L2 2638 3311 -2 532 359 85 23 chr1 77257152 77257728 -204935936 + L2 LINE L2 2264 2875 -439 1547 201 0 17 chr1 77257747 77258041 -204935623 - AluJo SINE Alu -23 289 1 183 226 36 107 chr1 77258106 77258190 -204935474 + L2 LINE L2 2941 3018 -254 239 187 133 13 chr1 77258606 77258681 -204934983 - MIR SINE MIR -40 222 139 684 246 47 89 chr1 77258899 77259260 -204934404 - HAL1 LINE L1 -8 2499 2154 1432 177 102 0 chr1 77259354 77259620 -204934044 + AluJo SINE Alu 13 305 -7 862 267 43 20 chr1 77259623 77259926 -204933738 - HAL1 LINE L1 -484 2023 1714 272 354 108 0 chr1 77260117 77260247 -204933417 + L2 LINE L2 3126 3269 -3 424 254 91 18 chr1 77261174 77261339 -204932325 - MIR SINE MIR -49 213 37 2173 100 3 50 chr1 77261427 77261748 -204931916 + AluSx SINE Alu 1 306 -6 1310 308 172 18 chr1 77261972 77263336 -204930328 - L2 LINE L2 -1655 1659 86 214 351 30 8 chr1 77263372 77263506 -204930158 + L2 LINE L2 2712 2848 -466 692 282 0 0 chr1 77263569 77263743 -204929921 + MIR SINE MIR 2 175 -87 209 278 56 14 chr1 77264023 77264095 -204929569 + L2 LINE L2 3189 3263 -9 2411 110 34 6 chr1 77264843 77265197 -204928467 - THE1B LTR MaLR 0 364 1 579 255 25 40 chr1 77266269 77266469 -204927195 - L2 LINE L2 0 3313 3117 1850 135 3 28 chr1 77266488 77266508 -204927156 - MER33 DNA MER1_type -2262 323 304 6529 138 68 28 chr1 77266508 77267197 -204926467 - Tigger3b DNA MER2_type -1797 1231 473 1953 130 19 19 chr1 77267197 77267504 -204926160 - AluSq SINE Alu -6 307 1 6529 138 68 28 chr1 77267504 77267997 -204925667 - Tigger3b DNA MER2_type -2555 473 1 1850 135 3 28 chr1 77267997 77268301 -204925363 - MER33 DNA MER1_type -2281 304 7 377 286 91 43 chr1 77268306 77268516 -204925148 - L2 LINE L2 -217 3096 2877 231 235 86 25 chr1 77268535 77268616 -204925048 + MLT1J LTR MaLR 224 309 -202 616 221 152 35 chr1 77268681 77268971 -204924693 - MER5C DNA MER1_type 0 324 1 194 316 113 12 chr1 77268974 77269142 -204924522 + MIR SINE MIR 78 262 0 181 304 22 0 chr1 77269150 77269196 -204924468 + L2 LINE L2 3133 3179 -93 445 315 136 0 chr1 77269342 77269526 -204924138 + MIR SINE MIR 2 210 -52 3994 130 43 56 chr1 77270113 77270163 -204923501 - L1MB3 LINE L1 -1 6182 6133 1640 153 102 0 chr1 77270163 77270438 -204923226 - AluSx SINE Alu -9 303 1 3994 130 43 56 chr1 77270438 77270953 -204922711 - L1MB3 LINE L1 -50 6133 5627 2244 116 0 0 chr1 77270953 77271256 -204922408 - AluSx SINE Alu -1 311 9 3994 130 43 56 chr1 77271256 77271459 -204922205 - L1MB3 LINE L1 -556 5627 5423 190 325 38 0 chr1 77271478 77271558 -204922106 - MIR SINE MIR -115 147 65 332 271 101 30 chr1 77271731 77271811 -204921853 + MIR SINE MIR 13 86 -176 207 0 0 0 chr1 77271811 77271834 -204921830 + (CAAGT)n Simple_repeat Simple_repeat 5 27 0 332 271 101 30 chr1 77271834 77271952 -204921712 + MIR SINE MIR 86 225 -37 203 221 12 58 chr1 77272003 77272089 -204921575 - L2 LINE L2 -54 3218 3137 24 32 0 0 chr1 77272424 77272455 -204921209 + AT_rich Low_complexity Low_complexity 1 31 0 5783 159 31 8 chr1 77272463 77273036 -204920628 + L1PB3 LINE L1 4125 4683 -1471 230 0 33 0 chr1 77273036 77273066 -204920598 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5783 159 31 8 chr1 77273066 77274475 -204919189 + L1PB3 LINE L1 4683 6152 -2 218 327 28 19 chr1 77274590 77274697 -204918967 + L2 LINE L2 3160 3267 -5 308 305 22 29 chr1 77274821 77274957 -204918707 - MIR SINE MIR -87 175 42 303 93 0 0 chr1 77275272 77275315 -204918349 + (CCTG)n Simple_repeat Simple_repeat 4 46 0 1127 207 51 0 chr1 77276325 77276542 -204917122 - MLT1B LTR MaLR 0 390 163 1107 188 0 0 chr1 77276589 77276770 -204916894 - AluJo SINE Alu -131 181 1 810 201 11 45 chr1 77276770 77276949 -204916715 - MLT1B LTR MaLR -217 173 1 471 333 78 5 chr1 77277024 77277228 -204916436 + MIR SINE MIR 29 247 -15 246 345 0 25 chr1 77277228 77277347 -204916317 + L2 LINE L2 2960 3075 -197 1157 140 58 0 chr1 77277562 77277769 -204915895 - MER20 DNA MER1_type 0 219 1 748 193 35 23 chr1 77277795 77277966 -204915698 - MER5A DNA MER1_type 0 189 17 549 306 39 20 chr1 77278253 77278508 -204915156 - L2 LINE L2 -3 3310 3051 617 167 53 0 chr1 77278508 77278622 -204915042 + MER63 DNA MER1_type 1 746 -316 840 201 12 12 chr1 77278626 77278795 -204914869 - FRAM SINE Alu -13 163 1 1399 235 29 6 chr1 77278796 77279111 -204914553 + MER63 DNA MER1_type 740 1061 0 260 247 0 56 chr1 77279111 77279200 -204914464 - L2 LINE L2 -255 3058 2975 251 264 208 0 chr1 77279884 77279990 -204913674 - MIR SINE MIR -71 191 64 2157 138 80 42 chr1 77281425 77281875 -204911789 + MLT1C LTR MaLR 1 467 0 361 84 24 145 chr1 77282034 77282117 -204911547 + MLT1C LTR MaLR 395 467 0 3093 14 8 0 chr1 77282651 77283005 -204910659 - L1PA2 LINE L1 -1 6154 5798 2212 119 7 7 chr1 77284023 77284333 -204909331 + AluSx SINE Alu 1 310 -2 520 273 81 12 chr1 77284500 77284661 -204909003 - MLT1J LTR MaLR -338 173 2 1495 247 68 64 chr1 77284891 77285482 -204908182 + MLT1E LTR MaLR 1 593 0 1725 176 3 19 chr1 77285907 77286220 -204907444 - AluJb SINE Alu -4 308 1 1748 155 3 28 chr1 77286595 77286911 -204906753 - AluJb SINE Alu 0 309 1 346 193 11 11 chr1 77286926 77287014 -204906650 + CT-rich Low_complexity Low_complexity 1 88 0 333 118 0 0 chr1 77287358 77287409 -204906255 + (CTTA)n Simple_repeat Simple_repeat 2 52 0 2147 117 0 17 chr1 77287409 77287699 -204905965 - AluSx SINE Alu -27 285 1 1447 140 92 37 chr1 77288206 77288477 -204905187 - AluJb SINE Alu -7 305 20 326 355 40 8 chr1 77288489 77288613 -204905051 + L2 LINE L2 3134 3261 -11 379 197 13 0 chr1 77288772 77288848 -204904816 + L2 LINE L2 3185 3261 -11 307 320 55 37 chr1 77289523 77289829 -204903835 + L2 LINE L2 2715 3030 -242 274 292 127 105 chr1 77289929 77290196 -204903468 - L2 LINE L2 0 3272 3000 239 183 31 0 chr1 77290450 77290510 -204903154 + MER91 DNA MER1_type 2 52 -88 2324 113 3 0 chr1 77290619 77290930 -204902734 + AluSx SINE Alu 1 312 0 2039 139 0 13 chr1 77291296 77291597 -204902067 - AluSx SINE Alu -15 297 1 2496 97 11 16 chr1 77292173 77292543 -204901121 - L1PA16 LINE L1 -1 6165 5798 2734 190 122 52 chr1 77292816 77292994 -204900670 - Charlie2 DNA MER1_type -6 2856 2692 2081 135 26 7 chr1 77292994 77293298 -204900366 + AluSx SINE Alu 1 310 -2 2734 190 122 52 chr1 77293298 77294039 -204899625 - Charlie2 DNA MER1_type -170 2692 1873 1007 41 0 0 chr1 77294050 77294171 -204899493 + L1PA3 LINE L1 6034 6154 -1 1626 159 4 4 chr1 77294196 77294448 -204899216 - AluJb SINE Alu -60 252 1 447 273 83 23 chr1 77294453 77294669 -204898995 - Charlie2 DNA MER1_type -2476 306 78 432 314 69 51 chr1 77294981 77295377 -204898287 - MLT1J LTR MaLR -19 596 112 465 278 73 31 chr1 77295482 77295673 -204897991 - MIR SINE MIR -43 219 21 1000 282 90 20 chr1 77296295 77296927 -204896737 + L2 LINE L2 2524 3189 -124 434 314 121 24 chr1 77297001 77297291 -204896373 + MLT1I LTR MaLR 92 409 0 599 238 16 0 chr1 77297291 77297417 -204896247 + L2 LINE L2 3186 3313 0 395 364 135 11 chr1 77297896 77298355 -204895309 + L2 LINE L2 1805 2320 -994 257 335 49 49 chr1 77298651 77298917 -204894747 + LTR16C LTR ERVL 214 479 -12 193 281 183 20 chr1 77298934 77299087 -204894577 + L2 LINE L2 2324 2501 -813 278 277 161 23 chr1 77299597 77299727 -204893937 + MIR SINE MIR 34 181 -81 206 191 71 0 chr1 77299760 77299802 -204893862 - MIR SINE MIR -1 261 217 208 297 66 33 chr1 77299835 77299926 -204893738 + MIR3 SINE MIR 65 158 -50 398 268 65 41 chr1 77301122 77301245 -204892419 - L2 LINE L2 0 3272 3147 308 321 149 8 chr1 77301357 77301491 -204892173 + L2 LINE L2 3119 3271 -1 214 191 24 0 chr1 77301491 77301533 -204892131 + GA-rich Low_complexity Low_complexity 5 47 0 836 217 22 50 chr1 77301551 77301731 -204891933 + AluJb SINE Alu 120 294 -18 1205 55 11 17 chr1 77301756 77301937 -204891727 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 227 203 16 0 chr1 77301948 77302012 -204891652 + GA-rich Low_complexity Low_complexity 4 68 0 392 342 36 15 chr1 77302742 77302938 -204890726 - MIR SINE MIR -27 235 36 1837 147 25 3 chr1 77304355 77304641 -204889023 + AluJo SINE Alu 1 292 -20 362 231 66 0 chr1 77304655 77304746 -204888918 + MIR SINE MIR 52 148 -114 279 140 0 0 chr1 77305320 77305370 -204888294 + (TG)n Simple_repeat Simple_repeat 2 51 0 336 218 0 11 chr1 77305468 77305555 -204888109 + MIR SINE MIR 163 248 -14 456 72 0 0 chr1 77305957 77306026 -204887638 + (CA)n Simple_repeat Simple_repeat 1 69 0 195 247 129 24 chr1 77306647 77306732 -204886932 + L2 LINE L2 3179 3272 0 353 333 77 18 chr1 77306828 77307164 -204886500 + L1M4 LINE L1 2694 3049 -3097 436 259 130 57 chr1 77307166 77307482 -204886182 + L1M4 LINE L1 3090 3428 -2718 250 109 0 65 chr1 77307779 77307825 -204885839 - L1MC4 LINE L1 -1339 6703 6661 772 167 68 19 chr1 77307849 77308011 -204885653 + MLT1A2 LTR MaLR 1 170 -220 921 124 0 0 chr1 77308017 77308138 -204885526 - FLAM_C SINE Alu -18 125 5 980 170 46 203 chr1 77308177 77308418 -204885246 + MLT1A2 LTR MaLR 189 374 0 264 176 111 28 chr1 77308454 77308562 -204885102 + L1P LINE L1 5291 5407 -724 240 259 28 84 chr1 77308645 77308788 -204884876 + L1ME LINE L1 5545 5679 -491 420 214 0 20 chr1 77309942 77310040 -204883624 - MIR SINE MIR -57 205 110 733 266 98 62 chr1 77310044 77310624 -204883040 + MLT1H1 LTR MaLR 10 555 0 415 250 10 10 chr1 77310624 77310720 -204882944 - MIR SINE MIR -150 112 17 195 317 78 28 chr1 77310888 77311030 -204882634 - L2 LINE L2 -17 3296 3148 333 148 0 0 chr1 77311030 77311084 -204882580 + L1MB3 LINE L1 5546 5599 -584 331 135 0 0 chr1 77311085 77311137 -204882527 - MADE1 DNA Mariner -28 52 1 2750 150 113 4 chr1 77311137 77311650 -204882014 + L1MB3 LINE L1 5612 6180 -3 2190 108 0 10 chr1 77311666 77311961 -204881703 - AluSq SINE Alu -21 292 1 25 0 0 0 chr1 77312308 77312333 -204881331 + AT_rich Low_complexity Low_complexity 1 25 0 808 158 0 22 chr1 77312385 77312504 -204881160 + AluJ SINE Alu 1 118 -194 300 53 0 0 chr1 77312504 77312542 -204881122 + (TAA)n Simple_repeat Simple_repeat 2 39 0 808 158 0 22 chr1 77312542 77312561 -204881103 + AluJ SINE Alu 118 136 -176 713 258 132 11 chr1 77312624 77312996 -204880668 - L1ME4a LINE L1 -69 6052 5636 286 286 32 0 chr1 77313241 77313304 -204880360 + L2 LINE L2 3205 3269 -3 184 189 81 0 chr1 77314111 77314148 -204879516 - L2 LINE L2 -3 3269 3230 1693 216 3 8 chr1 77314153 77314538 -204879126 - Charlie5 DNA MER1_type 0 2624 2242 555 224 0 9 chr1 77314547 77314663 -204879001 - MER3 DNA MER1_type -56 153 39 491 301 137 48 chr1 77315117 77315489 -204878175 + MLT1L LTR MaLR 1 405 -210 860 10 0 0 chr1 77316518 77316614 -204877050 + L1PA2 LINE L1 6060 6155 0 236 254 17 17 chr1 77318478 77318537 -204875127 - MER5B DNA MER1_type -1 177 119 2582 152 27 5 chr1 77318540 77318988 -204874676 + L1MB3 LINE L1 5649 6106 -77 1113 125 26 57 chr1 77318990 77319182 -204874482 + AluJ SINE Alu 113 298 -14 242 83 0 0 chr1 77319182 77319218 -204874446 + L1MB3 LINE L1 6134 6169 -14 308 246 131 31 chr1 77319317 77319447 -204874217 - L2 LINE L2 -4 3268 3126 498 242 89 33 chr1 77319713 77320079 -204873585 + MLT1J2 LTR MaLR 1 436 -14 26 0 0 0 chr1 77320126 77320152 -204873512 + AT_rich Low_complexity Low_complexity 1 26 0 583 157 130 9 chr1 77320432 77320540 -204873124 + AluJb SINE Alu 52 172 -140 797 259 46 12 chr1 77320543 77320802 -204872862 - LTR16B LTR ERVL -153 311 44 1002 136 6 34 chr1 77321171 77321348 -204872316 + FRAM SINE Alu 5 176 0 2123 129 0 13 chr1 77321351 77321653 -204872011 + AluSx SINE Alu 1 298 -14 209 350 0 25 chr1 77321660 77321740 -204871924 + L2 LINE L2 3191 3268 -4 321 362 24 0 chr1 77321797 77321924 -204871740 + MIR3 SINE MIR 33 162 -46 779 235 6 12 chr1 77322507 77322673 -204870991 + MIR SINE MIR 41 205 -57 213 329 13 0 chr1 77322774 77322853 -204870811 - MIR SINE MIR -14 248 169 860 146 0 39 chr1 77322883 77323013 -204870651 + FLAM_C SINE Alu 1 125 -8 22 0 0 0 chr1 77323015 77323037 -204870627 + AT_rich Low_complexity Low_complexity 1 22 0 246 304 73 4 chr1 77323037 77323156 -204870508 - MIR SINE MIR -73 135 1 578 288 117 25 chr1 77323896 77324222 -204869442 + L2 LINE L2 1290 1645 -1669 208 326 76 35 chr1 77324238 77324382 -204869282 + L2 LINE L2 1607 1756 -1558 246 329 6 35 chr1 77324590 77324615 -204869049 - L1MA10 LINE L1 0 6334 6310 4133 202 56 25 chr1 77324615 77324656 -204869008 - L1ME1 LINE L1 -16 6430 6392 885 154 0 0 chr1 77324656 77324779 -204868885 + FLAM_A SINE Alu 1 123 -10 4133 202 56 25 chr1 77324779 77326221 -204867443 - L1ME1 LINE L1 -54 6392 4893 348 262 59 37 chr1 77326246 77326433 -204867231 + L1M4b LINE L1 13 203 -6656 259 235 200 17 chr1 77326585 77326700 -204866964 + L1M4b LINE L1 1226 1361 -5586 304 70 23 0 chr1 77326730 77326773 -204866891 + Alu SINE Alu 1 44 -257 857 255 0 16 chr1 77326873 77327120 -204866544 - L1ME1 LINE L1 -3326 3100 2858 27 81 0 0 chr1 77328121 77328183 -204865481 + AT_rich Low_complexity Low_complexity 1 62 0 652 234 69 18 chr1 77328878 77329096 -204864568 - L1ME1 LINE L1 -3642 2784 2556 1360 169 16 75 chr1 77329096 77329350 -204864314 + MER8 DNA MER2_type 1 239 0 8435 175 114 10 chr1 77329354 77331160 -204862504 - L1ME1 LINE L1 -4401 2025 32 225 0 0 0 chr1 77331781 77331806 -204861858 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 429 287 132 18 chr1 77331941 77332108 -204861556 + MIR SINE MIR 66 251 -11 858 163 0 15 chr1 77332313 77332448 -204861216 - FLAM_C SINE Alu -10 133 1 614 179 39 64 chr1 77332474 77332630 -204861034 - MER106B DNA MER1_type -904 155 4 281 281 56 0 chr1 77333684 77333773 -204859891 + CT-rich Low_complexity Low_complexity 2 95 0 386 321 83 6 chr1 77333781 77333949 -204859715 - MIR SINE MIR -4 258 78 401 268 27 0 chr1 77334220 77334332 -204859332 + MIR SINE MIR 8 122 -140 328 324 0 10 chr1 77334339 77334441 -204859223 - L2 LINE L2 -4 3309 3209 5033 185 135 21 chr1 77334782 77336078 -204857586 + Charlie1a DNA MER1_type 6 1449 -6 2642 140 85 30 chr1 77336447 77336690 -204856974 - Tigger2 DNA MER2_type -1 2717 2489 2109 98 11 3 chr1 77336690 77337005 -204856659 - AluSc SINE Alu 0 317 1 2642 140 85 30 chr1 77337005 77337233 -204856431 - Tigger2 DNA MER2_type -229 2489 2217 1937 137 36 27 chr1 77337233 77337569 -204856095 - MER1B DNA MER1_type 0 339 1 2480 148 55 2 chr1 77338531 77338930 -204854734 + MSTB1 LTR MaLR 6 425 -7 223 333 83 9 chr1 77338966 77339074 -204854590 + MIR SINE MIR 86 201 -61 217 324 68 0 chr1 77339087 77339161 -204854503 - L2 LINE L2 -12 3260 3182 183 315 124 0 chr1 77340180 77340269 -204853395 - L2 LINE L2 0 3313 3214 318 350 51 0 chr1 77340543 77340680 -204852984 + MIR SINE MIR 4 147 -115 222 136 0 0 chr1 77340787 77340831 -204852833 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 1121 281 151 46 chr1 77343355 77344335 -204849329 - L2 LINE L2 0 3313 2224 2247 110 0 19 chr1 77344766 77345076 -204848588 + AluSg SINE Alu 1 304 -6 1276 211 14 42 chr1 77347038 77347327 -204846337 + AluJo SINE Alu 1 311 0 238 33 0 0 chr1 77347327 77347357 -204846307 + (CAAAA)n Simple_repeat Simple_repeat 1 175 0 613 189 9 0 chr1 77347711 77347817 -204845847 + MER81 DNA DNA 1 107 -7 189 200 67 0 chr1 77347888 77347933 -204845731 + MIR SINE MIR 128 175 -87 315 338 69 69 chr1 77348291 77348608 -204845056 + L2 LINE L2 2866 3182 -90 750 124 0 0 chr1 77348608 77348729 -204844935 + (CA)n Simple_repeat Simple_repeat 2 122 0 1776 128 3 53 chr1 77348748 77349030 -204844634 - AluSx SINE Alu -44 268 1 208 278 0 0 chr1 77349045 77349099 -204844565 + L2 LINE L2 3229 3282 -31 8140 22 16 4 chr1 77349589 77350593 -204843071 - L1PA3 LINE L1 0 6155 5149 256 278 67 61 chr1 77350690 77350870 -204842794 + L1MC/D LINE L1 5620 5803 -361 440 315 123 5 chr1 77350921 77351140 -204842524 - MIR SINE MIR 0 262 18 446 197 220 8 chr1 77352005 77352137 -204841527 + MER3 DNA MER1_type 45 204 -5 405 301 279 3 chr1 77352143 77352505 -204841159 + L2 LINE L2 2272 2733 -581 326 321 31 38 chr1 77352550 77352709 -204840955 + L2 LINE L2 3156 3313 0 319 358 37 9 chr1 77353513 77353622 -204840042 - L2 LINE L2 -20 3252 3141 851 255 48 5 chr1 77353723 77353931 -204839733 + MIR SINE MIR 22 238 -24 411 230 35 0 chr1 77353955 77354042 -204839622 + MER7A DNA MER2_type 1 88 -258 1654 135 64 0 chr1 77354076 77354342 -204839322 + MER7A DNA MER2_type 65 345 -1 262 286 113 68 chr1 77354412 77354545 -204839119 - L2 LINE L2 -209 3063 2925 218 289 26 26 chr1 77354607 77354683 -204838981 - L2 LINE L2 -509 2805 2730 879 269 45 8 chr1 77355297 77355539 -204838125 + MIR SINE MIR 12 262 0 1010 173 203 0 chr1 77355686 77355923 -204837741 + MER33 DNA MER1_type 1 285 -39 51 75 0 0 chr1 77355925 77356032 -204837632 + AT_rich Low_complexity Low_complexity 1 107 0 231 167 0 0 chr1 77356033 77356069 -204837595 + MER33 DNA MER1_type 327 362 -1 1485 220 110 73 chr1 77357209 77357728 -204835936 - MLT1H LTR MaLR 0 549 12 235 244 76 53 chr1 77358516 77358647 -204835017 + MER5A DNA MER1_type 28 161 -28 299 278 123 25 chr1 77358739 77358894 -204834770 + MIR3 SINE MIR 20 170 -38 696 284 144 63 chr1 77360944 77361387 -204832277 - MLT1K LTR MaLR -8 580 102 433 102 34 0 chr1 77361415 77361474 -204832190 + U7 snRNA snRNA 2 62 -1 26 30 0 0 chr1 77361484 77361517 -204832147 + AT_rich Low_complexity Low_complexity 1 33 0 294 188 0 0 chr1 77361817 77361865 -204831799 + Charlie4 DNA MER1_type 6 53 -1908 227 222 0 0 chr1 77362202 77362247 -204831417 - MIR SINE MIR -23 239 195 654 248 95 45 chr1 77362607 77362829 -204830835 + MIR SINE MIR 20 252 -10 258 106 0 0 chr1 77363036 77363083 -204830581 + (TC)n Simple_repeat Simple_repeat 1 47 0 530 266 47 24 chr1 77365344 77365513 -204828151 + MIR SINE MIR 88 260 -2 573 288 140 0 chr1 77365722 77365951 -204827713 + MIR SINE MIR 2 262 0 614 221 8 8 chr1 77365993 77366115 -204827549 + FLAM_A SINE Alu 2 123 -10 708 169 99 0 chr1 77366748 77366890 -204826774 - LTR32 LTR ERVL 0 471 316 677 227 19 0 chr1 77366899 77367053 -204826611 + MER69A DNA AcHobo 21 177 0 438 20 0 0 chr1 77367918 77367969 -204825695 + (TG)n Simple_repeat Simple_repeat 1 51 0 210 143 0 0 chr1 77369355 77369390 -204824274 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr1 77370251 77370276 -204823388 + AT_rich Low_complexity Low_complexity 1 25 0 935 99 14 49 chr1 77370393 77370535 -204823129 + FRAM SINE Alu 23 159 -17 1742 207 183 12 chr1 77370546 77370947 -204822717 + L1MC4 LINE L1 7448 7955 -87 270 0 0 0 chr1 77370947 77370977 -204822687 + (TC)n Simple_repeat Simple_repeat 1 30 0 1742 207 183 12 chr1 77370977 77371082 -204822582 + L1MC4 LINE L1 7955 8041 -1 204 229 21 0 chr1 77371477 77371525 -204822139 + (TATG)n Simple_repeat Simple_repeat 3 51 0 242 371 0 0 chr1 77371597 77371667 -204821997 + L3 LINE CR1 1496 1565 -12 199 214 202 34 chr1 77372769 77372858 -204820806 + MIR SINE MIR 159 262 0 201 289 82 52 chr1 77372948 77373045 -204820619 - MIR3 SINE MIR 0 208 109 259 327 0 62 chr1 77373090 77373203 -204820461 + MIR SINE MIR 130 235 -27 431 314 59 7 chr1 77373204 77373357 -204820307 + L2 LINE L2 3111 3271 -1 242 258 106 0 chr1 77373439 77373505 -204820159 + MIR SINE MIR 63 135 -73 28 0 0 0 chr1 77373657 77373685 -204819979 + AT_rich Low_complexity Low_complexity 1 28 0 814 285 4 58 chr1 77374391 77374668 -204818996 - MIR SINE MIR 0 262 1 2294 128 42 0 chr1 77374891 77375249 -204818415 - L1MA4 LINE L1 -5 6295 5923 2142 128 0 7 chr1 77375794 77376098 -204817566 + AluSq SINE Alu 1 302 -11 1881 142 67 29 chr1 77376709 77377055 -204816609 + MER46B DNA MER2_type 2 235 -1 234 310 71 26 chr1 77377256 77377369 -204816295 - MIR3 SINE MIR -39 169 52 332 297 68 17 chr1 77377665 77377783 -204815881 + L2 LINE L2 2608 2731 -583 201 337 35 35 chr1 77378312 77378398 -204815266 - L2 LINE L2 -2 3270 3185 1115 248 146 9 chr1 77378735 77379174 -204814490 - MLT1L LTR MaLR -17 598 100 511 310 86 40 chr1 77379408 77379782 -204813882 - L2 LINE L2 -571 2743 2353 1261 135 99 36 chr1 77380645 77380867 -204812797 - MER46A DNA MER2_type 0 236 1 364 335 70 43 chr1 77380894 77381124 -204812540 - L2 LINE L2 -4 3268 3033 272 283 0 43 chr1 77381409 77381501 -204812163 + MER117 DNA MER1_type 61 148 -49 229 304 51 0 chr1 77381498 77381577 -204812087 + MER117 DNA MER1_type 114 196 -1 * 327 130 0 0 chr1 77382839 77382893 -204810771 + (TG)n Simple_repeat Simple_repeat 2 55 0 233 191 0 0 chr1 77382924 77382966 -204810698 + (TGGG)n Simple_repeat Simple_repeat 3 44 0 263 299 66 58 chr1 77383509 77383646 -204810018 - L2 LINE L2 -10 3262 3125 438 208 57 196 chr1 77384615 77384880 -204808784 - MIR SINE MIR 0 262 35 2239 120 0 0 chr1 77386648 77386949 -204806715 + AluSx SINE Alu 1 301 -11 295 283 217 13 chr1 77388123 77388275 -204805389 - L2 LINE L2 -4 3309 3127 333 294 8 50 chr1 77388446 77388565 -204805099 - MIR SINE MIR -88 174 61 350 253 35 0 chr1 77388649 77388736 -204804928 - MIR SINE MIR -77 131 42 1040 239 30 4 chr1 77388939 77389173 -204804491 - MIR SINE MIR -11 251 12 393 257 149 20 chr1 77389239 77389387 -204804277 + MIR SINE MIR 32 198 -64 863 264 93 0 chr1 77389778 77389994 -204803670 + MIR SINE MIR 18 253 -9 374 227 16 86 chr1 77391044 77391172 -204802492 + MER113 DNA MER1_type? 2 120 -401 22 0 0 0 chr1 77391382 77391404 -204802260 + AT_rich Low_complexity Low_complexity 1 22 0 287 210 222 0 chr1 77391519 77391600 -204802064 + MIR SINE MIR 143 241 -21 22 0 0 0 chr1 77391726 77391748 -204801916 + AT_rich Low_complexity Low_complexity 1 22 0 667 279 143 4 chr1 77392101 77392345 -204801319 - Charlie8 DNA MER1_type -2139 278 1 1668 174 75 8 chr1 77393131 77393458 -204800206 - MLT1A1 LTR MaLR -20 447 1 1382 205 0 0 chr1 77393511 77393735 -204799929 - MER58A DNA MER1_type 0 224 1 345 249 148 28 chr1 77393927 77394144 -204799520 - L1ME4a LINE L1 -238 5883 5641 215 289 48 24 chr1 77394451 77394534 -204799130 + L2 LINE L2 3000 3084 -188 206 214 0 0 chr1 77394617 77394659 -204799005 + L2 LINE L2 3267 3308 -5 327 241 44 137 chr1 77394703 77394865 -204798799 - L2 LINE L2 -835 2479 2304 2101 141 0 7 chr1 77394865 77395171 -204798493 - AluSx SINE Alu -8 304 1 1372 218 20 14 chr1 77395174 77395467 -204798197 - AluJo SINE Alu -17 295 1 327 241 44 137 chr1 77395467 77395644 -204798020 - L2 LINE L2 -1012 2302 2168 258 200 31 31 chr1 77395622 77395687 -204797977 + L2 LINE L2 3160 3224 -48 * 1478 150 63 12 chr1 77395844 77396098 -204797566 + AluJb SINE Alu 1 267 -45 342 346 20 33 chr1 77396492 77396645 -204797019 - MIR3 SINE MIR -48 160 10 24 53 0 0 chr1 77396734 77396772 -204796892 + AT_rich Low_complexity Low_complexity 1 38 0 251 331 85 15 chr1 77397036 77397166 -204796498 + MIR SINE MIR 48 186 -76 552 237 137 23 chr1 77398445 77398663 -204795001 - MIR SINE MIR -11 251 7 338 289 38 13 chr1 77398714 77398873 -204794791 - MER103 DNA DNA -2 164 2 2159 128 3 10 chr1 77398912 77399224 -204794440 + AluSx SINE Alu 1 310 -2 908 153 0 0 chr1 77399292 77399423 -204794241 + FRAM SINE Alu 16 146 -30 571 288 104 14 chr1 77399441 77399653 -204794011 + MIR SINE MIR 2 232 -30 26 64 0 0 chr1 77400453 77400500 -204793164 + AT_rich Low_complexity Low_complexity 1 47 0 281 243 146 0 chr1 77401266 77401369 -204792295 + MIR3 SINE MIR 14 131 -77 210 361 12 0 chr1 77402311 77402394 -204791270 + L2 LINE L2 2701 2784 -530 194 255 143 127 chr1 77402479 77402801 -204790863 + L2 LINE L2 2914 3240 -32 1136 181 177 120 chr1 77403309 77403568 -204790096 - L1ME3A LINE L1 -1 6169 5926 1816 149 0 18 chr1 77403568 77403850 -204789814 - AluSx SINE Alu -35 277 1 1136 181 177 120 chr1 77403850 77404105 -204789559 - L1ME3A LINE L1 -244 5926 5626 230 319 45 38 chr1 77405763 77405920 -204787744 - MER5B DNA MER1_type -3 175 18 510 236 54 96 chr1 77409268 77409378 -204784286 - L1ME3 LINE L1 -160 6024 5922 2153 109 3 0 chr1 77409378 77409662 -204784002 + AluSx SINE Alu 1 285 -27 510 236 54 96 chr1 77409662 77409764 -204783900 - L1ME3 LINE L1 -262 5922 5817 717 274 32 8 chr1 77410259 77410511 -204783153 + MIR SINE MIR 3 260 -2 475 239 77 19 chr1 77411062 77411217 -204782447 - MIR SINE MIR -71 191 28 850 225 16 6 chr1 77412556 77412738 -204780926 - MER5A DNA MER1_type -2 187 4 279 222 0 28 chr1 77413114 77413186 -204780478 + L1MC4a LINE L1 5851 5920 -1888 406 216 43 17 chr1 77413385 77413501 -204780163 + MIR SINE MIR 144 262 0 548 278 94 14 chr1 77414226 77414449 -204779215 + MIR SINE MIR 21 261 -1 785 256 55 24 chr1 77414941 77415195 -204778469 + MIR SINE MIR 1 262 0 646 180 275 0 chr1 77415562 77415762 -204777902 + Charlie5 DNA MER1_type 2364 2618 0 567 226 146 30 chr1 77416040 77416239 -204777425 - MIR SINE MIR -34 228 7 2130 112 10 3 chr1 77416539 77416834 -204776830 - AluSx SINE Alu -15 297 1 256 276 30 0 chr1 77416946 77417021 -204776643 + MER5A DNA MER1_type 24 105 -78 551 243 144 27 chr1 77417440 77417662 -204776002 + MIR SINE MIR 14 261 -1 301 268 53 74 chr1 77418254 77418444 -204775220 - LTR67 LTR ERVL 0 557 372 2006 157 36 41 chr1 77418683 77418851 -204774813 - MLT1B LTR MaLR 0 390 223 2326 84 20 0 chr1 77418851 77419150 -204774514 + AluSq SINE Alu 1 305 -8 2006 157 36 41 chr1 77419150 77419369 -204774295 - MLT1B LTR MaLR -167 223 5 392 260 20 27 chr1 77419566 77419716 -204773948 - MIR SINE MIR -66 196 48 444 202 197 111 chr1 77419830 77420028 -204773636 - Charlie8 DNA MER1_type -2183 234 20 186 250 83 0 chr1 77420277 77420337 -204773327 - MIR SINE MIR -87 175 111 1300 94 0 0 chr1 77421039 77421199 -204772465 + AluSq SINE Alu 1 160 -153 1892 156 3 10 chr1 77421364 77421659 -204772005 - AluJb SINE Alu -19 293 1 783 236 83 60 chr1 77422236 77422836 -204770828 + LTR48 LTR ERV1 1 585 0 204 265 133 51 chr1 77423117 77423215 -204770449 + L2 LINE L2 3162 3267 -5 492 132 0 0 chr1 77423809 77423915 -204769749 + (TA)n Simple_repeat Simple_repeat 1 106 0 301 272 0 22 chr1 77423920 77424012 -204769652 - L1MC4 LINE L1 -1339 6703 6614 192 111 0 0 chr1 77424019 77424055 -204769609 + (TA)n Simple_repeat Simple_repeat 1 36 0 300 255 0 43 chr1 77424058 77424152 -204769512 - L1MC4 LINE L1 -1339 6703 6614 * 320 311 0 0 chr1 77424146 77424236 -204769428 + L1MC4 LINE L1 6614 6703 -1339 309 169 28 56 chr1 77424188 77424259 -204769405 - L1MC4 LINE L1 -1337 6705 6637 * 2467 79 3 16 chr1 77427108 77427425 -204766239 + AluSp SINE Alu 1 313 0 322 238 86 0 chr1 77427862 77427967 -204765697 - L1MC4 LINE L1 0 8042 7929 687 245 107 40 chr1 77428097 77428424 -204765240 - L1MC4 LINE L1 -476 7566 7218 23 0 0 0 chr1 77429728 77429751 -204763913 + AT_rich Low_complexity Low_complexity 1 23 0 505 251 12 41 chr1 77431920 77432091 -204761573 + MIR3 SINE MIR 19 184 -24 203 297 35 126 chr1 77432611 77432921 -204760743 - L2 LINE L2 -1 3271 2990 2700 32 3 7 chr1 77433887 77434195 -204759469 + AluY SINE Alu 1 307 -4 2059 126 3 7 chr1 77434827 77435167 -204758497 - AluSx SINE Alu 0 312 1 263 164 86 69 chr1 77435547 77435663 -204758001 - MER113 DNA MER1_type? -364 157 40 2345 71 7 3 chr1 77435739 77436034 -204757630 + AluY SINE Alu 1 296 -15 494 273 21 43 chr1 77436234 77436421 -204757243 - MIR SINE MIR -36 226 44 2317 112 0 0 chr1 77436674 77436979 -204756685 - AluSx SINE Alu -7 305 1 413 265 0 0 chr1 77436979 77437077 -204756587 - MIR SINE MIR -58 204 107 307 335 60 27 chr1 77437125 77437310 -204756354 + MIR3 SINE MIR 5 195 -13 491 335 12 6 chr1 77437921 77438082 -204755582 - L2 LINE L2 -217 3055 2894 2701 33 0 0 chr1 77438207 77438506 -204755158 - AluY SINE Alu -12 299 1 189 333 12 0 chr1 77438822 77438903 -204754761 + L2 LINE L2 2978 3059 -213 462 18 0 0 chr1 77438906 77438961 -204754703 + (CA)n Simple_repeat Simple_repeat 2 56 0 445 274 102 19 chr1 77439401 77439616 -204754048 - MIR SINE MIR -2 260 28 686 197 0 0 chr1 77439633 77439755 -204753909 - FLAM_C SINE Alu -1 142 21 233 328 9 52 chr1 77440250 77440366 -204753298 + MIR SINE MIR 22 132 -76 2240 103 3 3 chr1 77440445 77440771 -204752893 + AluSg SINE Alu 1 310 0 196 323 0 0 chr1 77440856 77440918 -204752746 + L2 LINE L2 3182 3243 -29 240 281 50 41 chr1 77441291 77441412 -204752252 + MER5A DNA MER1_type 62 183 -6 547 288 57 14 chr1 77441566 77441778 -204751886 - Charlie8 DNA MER1_type -2141 276 56 653 263 46 5 chr1 77442006 77442200 -204751464 + MIR SINE MIR 52 253 -9 227 319 14 0 chr1 77442446 77442515 -204751149 + L2 LINE L2 3223 3292 -21 180 0 0 0 chr1 77442881 77442901 -204750763 + (T)n Simple_repeat Simple_repeat 1 20 0 348 252 61 30 chr1 77443977 77444108 -204749556 - L2 LINE L2 0 3313 3179 23 33 0 0 chr1 77446415 77446445 -204747219 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 77449053 77449073 -204744591 + (CGGGGG)n Simple_repeat Simple_repeat 2 21 0 345 250 102 19 chr1 77450672 77450780 -204742884 + L2 LINE L2 3156 3272 0 26 30 0 0 chr1 77451539 77451572 -204742092 + AT_rich Low_complexity Low_complexity 1 33 0 1096 113 0 0 chr1 77452027 77452168 -204741496 + AluSq/x SINE Alu 1 141 -172 2189 96 3 72 chr1 77452168 77452503 -204741161 + AluSq SINE Alu 1 312 -1 1987 159 0 0 chr1 77452907 77453208 -204740456 - AluJo SINE Alu -11 301 1 1736 241 170 16 chr1 77453276 77453907 -204739757 + L2 LINE L2 2094 2821 -493 468 188 102 0 chr1 77453908 77454036 -204739628 + L1MB7 LINE L1 6044 6184 0 589 261 187 55 chr1 77454036 77454469 -204739195 + L2 LINE L2 2812 3301 -12 1972 61 0 20 chr1 77454475 77454722 -204738942 - AluY SINE Alu -15 296 55 220 259 0 0 chr1 77456229 77456283 -204737381 + MIR SINE MIR 88 141 -121 21 57 0 0 chr1 77456540 77456575 -204737089 + AT_rich Low_complexity Low_complexity 1 35 0 664 120 0 0 chr1 77457475 77457598 -204736066 - AluJb SINE Alu 0 312 190 689 120 7 133 chr1 77457634 77457784 -204735880 + FLAM_A SINE Alu 1 131 -2 497 322 45 37 chr1 77457816 77458061 -204735603 - MIR SINE MIR -13 249 3 243 321 200 0 chr1 77458129 77458269 -204735395 + MIR SINE MIR 90 257 -5 1941 148 0 49 chr1 77458549 77458874 -204734790 - AluSx SINE Alu -3 309 1 351 60 0 0 chr1 77460348 77460398 -204733266 + (TTCC)n Simple_repeat Simple_repeat 2 51 0 968 132 11 0 chr1 77460402 77460576 -204733088 + CT-rich Low_complexity Low_complexity 2 177 0 1416 146 90 45 chr1 77460576 77460844 -204732820 - AluJo SINE Alu -32 280 1 340 257 40 10 chr1 77460845 77460946 -204732718 + L1ME4a LINE L1 6001 6104 -17 489 182 91 0 chr1 77460953 77461063 -204732601 - L1ME2 LINE L1 -1 6163 6044 253 182 0 0 chr1 77461095 77461139 -204732525 - L1ME2 LINE L1 -101 6063 6020 450 300 25 0 chr1 77461398 77461518 -204732146 + L2 LINE L2 3149 3271 -1 419 273 7 72 chr1 77461557 77461696 -204731968 - L2 LINE L2 0 3313 3184 237 306 0 0 chr1 77462495 77462567 -204731097 + MIR SINE MIR 77 148 -114 339 261 0 33 chr1 77463068 77463160 -204730504 - L2 LINE L2 0 3313 3225 216 336 60 17 chr1 77463813 77463929 -204729735 - MIR SINE MIR -50 212 92 329 342 83 22 chr1 77464924 77465237 -204728427 + L2 LINE L2 2519 2850 -464 433 299 71 0 chr1 77465307 77465434 -204728230 + MER45A DNA AcHobo 6 141 -37 752 183 0 0 chr1 77465438 77465553 -204728111 + FLAM_C SINE Alu 2 116 -27 2274 88 7 3 chr1 77465739 77466035 -204727629 - AluY SINE Alu -13 298 2 269 209 0 45 chr1 77466162 77466229 -204727435 + MIR SINE MIR 154 217 -45 516 360 91 39 chr1 77466301 77466684 -204726980 - L2 LINE L2 -3 3269 2867 533 307 67 0 chr1 77466723 77466902 -204726762 + MER117 DNA MER1_type 2 192 -5 353 320 0 0 chr1 77466909 77467009 -204726655 - L2 LINE L2 -500 2814 2715 206 152 0 0 chr1 77467014 77467047 -204726617 + L2 LINE L2 3273 3305 -8 26 30 0 0 chr1 77467438 77467471 -204726193 + AT_rich Low_complexity Low_complexity 1 33 0 7101 36 0 0 chr1 77467653 77468823 -204724841 + L1PA5 LINE L1 4915 6084 -70 269 128 85 0 chr1 77468797 77468844 -204724820 + L1PA6 LINE L1 6091 6141 -13 * 260 59 0 0 chr1 77468814 77468848 -204724816 + L1PA3 LINE L1 6113 6146 -9 * 2357 88 0 16 chr1 77469185 77469490 -204724174 - AluSx SINE Alu -12 300 1 23 54 0 0 chr1 77469526 77469563 -204724101 + AT_rich Low_complexity Low_complexity 1 37 0 282 301 0 0 chr1 77469879 77469952 -204723712 + L2 LINE L2 3200 3272 0 208 159 0 23 chr1 77470380 77470424 -204723240 + T-rich Low_complexity Low_complexity 2 44 0 337 311 57 8 chr1 77470430 77470552 -204723112 - MIR SINE MIR -28 234 107 201 244 0 0 chr1 77470921 77470962 -204722702 + (ATG)n Simple_repeat Simple_repeat 2 42 0 576 314 88 0 chr1 77470967 77471193 -204722471 - MIR SINE MIR -12 250 5 240 59 0 0 chr1 77471299 77471333 -204722331 + (TG)n Simple_repeat Simple_repeat 2 35 0 214 388 59 0 chr1 77471652 77471737 -204721927 - L2 LINE L2 -25 3247 3158 354 331 24 8 chr1 77472070 77472197 -204721467 + MIR SINE MIR 25 153 -109 726 306 190 25 chr1 77472220 77472625 -204721039 - L2 LINE L2 0 3313 2842 724 272 56 28 chr1 77472625 77472912 -204720752 + L1ME3A LINE L1 5582 5876 -294 2362 82 10 10 chr1 77473914 77474217 -204719447 - AluSx SINE Alu -9 303 1 2203 282 85 25 chr1 77475005 77475410 -204718254 + L1MEc LINE L1 1 380 -6016 1047 53 61 0 chr1 77475410 77475541 -204718123 + MER85 DNA T2_type 1 139 0 2203 282 85 25 chr1 77475541 77476155 -204717509 + L1MEc LINE L1 380 1082 -5314 436 258 76 58 chr1 77476152 77476378 -204717286 - L1MCc LINE L1 -3884 3059 2831 * 1598 110 18 9 chr1 77476383 77476611 -204717053 - L1PA10 LINE L1 -1 6167 5938 1866 70 4 0 chr1 77476611 77476852 -204716812 + L1PA10 LINE L1 5706 5947 -221 1695 228 0 6 chr1 77476944 77477256 -204716408 + 7SLRNA srpRNA srpRNA 2 311 -9 2474 67 3 6 chr1 77477260 77477572 -204716092 + AluY SINE Alu 1 311 0 307 271 0 0 chr1 77477739 77477809 -204715855 - MLT1J LTR MaLR -338 173 104 21 0 0 0 chr1 77478921 77478942 -204714722 + AT_rich Low_complexity Low_complexity 1 21 0 229 269 198 60 chr1 77479833 77480000 -204713664 - L1MCc LINE L1 -5561 862 673 2880 57 0 0 chr1 77480167 77480500 -204713164 + L1PA6 LINE L1 5822 6154 0 3834 195 42 4 chr1 77480716 77481615 -204712049 + L1MA9 LINE L1 2921 3853 -2293 3060 155 38 18 chr1 77481615 77481660 -204712004 + L1MA9 LINE L1 5755 5798 -514 387 0 0 0 chr1 77481660 77481703 -204711961 + (CA)n Simple_repeat Simple_repeat 2 44 0 3060 155 38 18 chr1 77481703 77482201 -204711463 + L1MA9 LINE L1 5798 6312 0 310 324 116 63 chr1 77483170 77483679 -204709985 - L1MCc LINE L1 -5535 888 353 482 231 0 19 chr1 77535079 77535183 -204658481 - L2 LINE L2 -4 3309 3208 372 59 0 0 chr1 77535190 77535241 -204658423 + (CA)n Simple_repeat Simple_repeat 2 52 0 1146 304 58 12 chr1 77535245 77535672 -204657992 + LTR33 LTR ERVL 31 477 -44 * 6298 207 45 29 chr1 77535667 77537114 -204656550 - MER45R DNA AcHobo -111 1470 1 753 321 12 52 chr1 77537128 77537530 -204656134 - L2 LINE L2 -101 3212 2827 183 225 112 34 chr1 77537853 77537942 -204655722 + L2 LINE L2 2946 3041 -231 418 252 39 45 chr1 77538079 77538234 -204655430 + L2 LINE L2 3159 3312 -1 288 53 0 0 chr1 77538402 77538440 -204655224 + (CA)n Simple_repeat Simple_repeat 2 39 0 399 288 65 35 chr1 77538515 77538685 -204654979 + L2 LINE L2 3098 3272 0 22 35 0 0 chr1 77538781 77538810 -204654854 + AT_rich Low_complexity Low_complexity 1 29 0 1813 169 0 0 chr1 77539208 77539504 -204654160 + AluJb SINE Alu 1 296 -16 294 269 221 7 chr1 77539725 77539874 -204653790 - MIR3 SINE MIR 0 208 28 352 318 108 0 chr1 77540927 77541075 -204652589 + MIR SINE MIR 89 252 -10 653 244 80 13 chr1 77541165 77541390 -204652274 - MER46C DNA MER2_type -98 240 1 345 354 66 40 chr1 77542056 77542674 -204650990 - L2 LINE L2 -1698 1616 983 807 260 81 13 chr1 77542718 77542953 -204650711 + MIR SINE MIR 12 262 0 497 306 76 35 chr1 77542949 77543237 -204650427 + L2 LINE L2 2381 2680 -634 * 1074 211 23 18 chr1 77543247 77543465 -204650199 - MER20 DNA MER1_type 0 219 1 2145 113 0 0 chr1 77543630 77543914 -204649750 + AluSc SINE Alu 1 284 -25 329 88 35 0 chr1 77544015 77544072 -204649592 + GA-rich Low_complexity Low_complexity 2 60 0 322 176 137 88 chr1 77544107 77544209 -204649455 + MLT1D LTR MaLR 72 178 -327 26 82 0 0 chr1 77544215 77544276 -204649388 + AT_rich Low_complexity Low_complexity 1 61 0 1491 196 55 10 chr1 77544279 77544590 -204649074 + MLT1D LTR MaLR 181 505 0 184 281 53 0 chr1 77544596 77544653 -204649011 + MIR SINE MIR 73 132 -130 249 33 0 0 chr1 77544655 77544685 -204648979 + (TAA)n Simple_repeat Simple_repeat 3 32 0 2070 167 23 26 chr1 77544745 77545135 -204648529 + MLT1B LTR MaLR 2 390 0 2128 299 60 39 chr1 77545357 77546313 -204647351 + HAL1 LINE L1 3 978 -1529 376 303 27 29 chr1 77546952 77547097 -204646567 - MIR SINE MIR -62 146 17 286 310 0 0 chr1 77547468 77547555 -204646109 + MER117 DNA MER1_type 72 158 -39 2836 164 13 0 chr1 77547625 77548077 -204645587 + MER34B LTR ERV1 79 536 -29 1625 215 21 0 chr1 77548149 77548475 -204645189 - LTR53 LTR ERVL 0 519 187 187 294 110 37 chr1 77548823 77548932 -204644732 - MIR SINE MIR -76 132 16 197 316 0 0 chr1 77548972 77549029 -204644635 + L2 LINE L2 3257 3313 0 273 57 0 0 chr1 77549124 77549159 -204644505 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 1019 347 52 41 chr1 77549218 77550060 -204643604 - L2 LINE L2 -103 3210 2354 237 279 45 81 chr1 77550035 77550146 -204643518 - MIR SINE MIR -122 140 34 * 1027 122 6 6 chr1 77550298 77550454 -204643210 - L1M2 LINE L1 -542 5758 5603 497 333 53 9 chr1 77550952 77551177 -204642487 - MIR SINE MIR 0 262 28 1844 178 5 52 chr1 77552000 77552400 -204641264 - MLT1B LTR MaLR 0 390 10 251 205 96 60 chr1 77552473 77552556 -204641108 + MER5B DNA MER1_type 31 116 -62 368 309 43 72 chr1 77552723 77553108 -204640556 - L2 LINE L2 -217 3055 2689 240 278 188 0 chr1 77553155 77553299 -204640365 + L2 LINE L2 2641 2811 -503 734 54 0 0 chr1 77553334 77553427 -204640237 - AluYa5/8 SINE Alu -5 305 213 659 202 8 0 chr1 77553453 77553582 -204640082 + FRAM SINE Alu 41 170 -6 317 226 0 9 chr1 77553584 77553690 -204639974 + GA-rich Low_complexity Low_complexity 3 107 0 6790 244 58 16 chr1 77553716 77555207 -204638457 - L1MEc LINE L1 -1784 4431 3004 2386 109 0 0 chr1 77555207 77555518 -204638146 - AluSq SINE Alu -2 311 1 6790 244 58 16 chr1 77555518 77556288 -204637376 - L1MEc LINE L1 -3211 3004 2083 1611 129 0 0 chr1 77556288 77556513 -204637151 - AluSx SINE Alu -87 225 1 6790 244 58 16 chr1 77556513 77556879 -204636785 - L1MEc LINE L1 -4132 2083 1734 6883 130 49 8 chr1 77557001 77558184 -204635480 + Tigger3b DNA MER2_type 1 1231 0 338 338 76 13 chr1 77558326 77558483 -204635181 + L2 LINE L2 2902 3068 -204 549 204 27 14 chr1 77558617 77558764 -204634900 - MLT1K LTR MaLR 0 588 440 292 217 0 29 chr1 77558766 77558835 -204634829 + L3 LINE CR1 1329 1395 -182 1851 184 100 1 chr1 77558942 77559415 -204634249 + MER44D DNA MER2_type 1 605 0 915 302 48 10 chr1 77559415 77559831 -204633833 - LTR16C LTR ERVL -56 435 4 490 302 140 9 chr1 77559833 77560055 -204633609 - MIR SINE MIR -11 251 1 1907 200 30 63 chr1 77560063 77560558 -204633106 - MLT2B3 LTR ERVL -5 549 71 331 163 12 47 chr1 77560634 77560720 -204632944 - MLT2B3 LTR ERVL -469 85 3 3174 141 57 36 chr1 77561110 77561712 -204631952 - LTR18B LTR ERVL 0 614 1 1180 243 34 21 chr1 77562099 77562478 -204631186 + MLT1C LTR MaLR 59 442 -25 259 216 13 137 chr1 77562520 77562600 -204631064 + MIR SINE MIR 106 176 -32 478 291 38 37 chr1 77564012 77564229 -204629435 - MIR SINE MIR -23 239 20 729 220 77 138 chr1 77564231 77564767 -204628897 - MLT1G LTR MaLR 0 590 88 831 158 0 0 chr1 77565332 77565471 -204628193 - L1MB5 LINE L1 0 6174 6036 483 349 43 9 chr1 77565573 77565805 -204627859 + MIR SINE MIR 23 262 0 229 359 11 0 chr1 77565829 77565921 -204627743 + MIR3 SINE MIR 81 173 -35 317 24 24 0 chr1 77566013 77566055 -204627609 + (CA)n Simple_repeat Simple_repeat 2 44 0 371 134 175 10 chr1 77566091 77566188 -204627476 - L1MA10 LINE L1 -3 6331 6219 445 264 34 27 chr1 77566296 77566444 -204627220 + L2 LINE L2 3165 3313 0 481 354 51 0 chr1 77566820 77566998 -204626666 - MIR3 SINE MIR -8 200 14 254 279 44 0 chr1 77567009 77567077 -204626587 - L2 LINE L2 -2 3311 3241 2200 122 0 0 chr1 77567096 77567400 -204626264 + AluSx SINE Alu 1 304 -8 819 127 70 28 chr1 77567692 77567834 -204625830 + AluSq/x SINE Alu 2 149 -164 870 191 27 6 chr1 77567935 77568118 -204625546 - MER1B DNA MER1_type -110 187 1 2311 145 55 2 chr1 77569080 77569479 -204624185 + MSTB1 LTR MaLR 6 425 -7 253 324 83 9 chr1 77569515 77569623 -204624041 + MIR SINE MIR 86 201 -61 235 311 68 0 chr1 77569636 77569710 -204623954 - L2 LINE L2 -12 3260 3182 189 315 124 0 chr1 77570729 77570818 -204622846 - L2 LINE L2 0 3313 3214 329 350 51 0 chr1 77571092 77571229 -204622435 + MIR SINE MIR 4 147 -115 222 136 0 0 chr1 77571336 77571380 -204622284 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 1114 279 150 46 chr1 77573904 77574884 -204618780 - L2 LINE L2 0 3313 2224 2264 109 0 19 chr1 77575314 77575625 -204618039 + AluSg SINE Alu 1 305 -5 1304 211 14 42 chr1 77577551 77577870 -204615794 + AluJo SINE Alu 1 311 0 571 189 9 0 chr1 77578224 77578330 -204615334 + MER81 DNA DNA 1 107 -7 190 200 67 0 chr1 77578401 77578446 -204615218 + MIR SINE MIR 128 175 -87 318 334 73 73 chr1 77578804 77579121 -204614543 + L2 LINE L2 2866 3182 -90 453 566 0 11 chr1 77579122 77579304 -204614360 + (CA)n Simple_repeat Simple_repeat 1 180 0 1784 128 3 53 chr1 77579317 77579599 -204614065 - AluSx SINE Alu -44 268 1 211 278 0 0 chr1 77579614 77579668 -204613996 + L2 LINE L2 3229 3282 -31 27 81 0 0 chr1 77580878 77580940 -204612724 + AT_rich Low_complexity Low_complexity 1 62 0 7640 22 16 4 chr1 77581760 77582764 -204610900 - L1PA3 LINE L1 0 6155 5149 227 271 14 0 chr1 77582952 77583022 -204610642 + L1MC/D LINE L1 5709 5779 -2029 477 311 123 5 chr1 77583092 77583311 -204610353 - MIR SINE MIR 0 262 18 392 196 218 8 chr1 77584176 77584309 -204609355 + MER3 DNA MER1_type 45 205 -4 215 276 362 0 chr1 77584314 77584510 -204609154 + L2 LINE L2 2272 2538 -776 243 0 0 0 chr1 77584644 77584671 -204608993 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 1162 177 58 0 chr1 77584671 77584914 -204608750 + Tigger2 DNA MER2_type 2461 2717 -1 4407 192 134 20 chr1 77585283 77586577 -204607087 - Charlie1a DNA MER1_type -6 1449 8 333 324 0 10 chr1 77586919 77587021 -204606643 + L2 LINE L2 3209 3309 -4 398 268 27 0 chr1 77587028 77587140 -204606524 - MIR SINE MIR -140 122 8 405 321 83 6 chr1 77587411 77587579 -204606085 + MIR SINE MIR 78 258 -4 207 179 45 15 chr1 77587594 77587661 -204606003 + GA-rich Low_complexity Low_complexity 3 71 0 545 179 39 64 chr1 77588731 77588887 -204604777 + MER106B DNA MER1_type 4 155 -904 843 164 0 15 chr1 77588913 77589047 -204604617 + FLAM_C SINE Alu 1 132 -1 438 287 132 18 chr1 77589253 77589420 -204604244 - MIR SINE MIR -11 251 66 225 0 0 0 chr1 77589555 77589580 -204604084 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 7591 179 111 7 chr1 77590201 77592007 -204601657 + L1MC1 LINE L1 32 2025 -4401 1257 169 16 75 chr1 77592011 77592265 -204601399 - MER8 DNA MER2_type 0 239 1 9462 213 33 20 chr1 77592265 77596271 -204597393 + L1MC1 LINE L1 2556 6611 -2 267 258 129 52 chr1 77596450 77596605 -204597059 + MIR SINE MIR 39 205 -57 927 161 92 6 chr1 77596646 77596820 -204596844 + MER5A DNA MER1_type 1 189 0 231 347 81 0 chr1 77598035 77598159 -204595505 - MIR SINE MIR -99 163 30 * 243 260 31 42 chr1 77598137 77598233 -204595431 - MIR3 SINE MIR -6 202 108 466 237 86 0 chr1 77598420 77598559 -204595105 - MER3 DNA MER1_type -53 156 6 456 255 191 0 chr1 77598615 77598756 -204594908 + MIR3 SINE MIR 36 203 -5 422 246 75 88 chr1 77599521 77599749 -204593915 - MIR SINE MIR -3 259 35 245 289 62 0 chr1 77600494 77600591 -204593073 + MIR SINE MIR 77 179 -83 326 285 146 19 chr1 77601592 77601750 -204591914 - MER5B DNA MER1_type 0 178 1 357 256 11 61 chr1 77602477 77602628 -204591036 + MIR SINE MIR 20 159 -49 601 211 32 97 chr1 77602958 77603143 -204590521 - MIR SINE MIR -35 227 55 2022 163 10 0 chr1 77603460 77603767 -204589897 - AluJo SINE Alu -2 310 1 557 218 206 66 chr1 77604057 77604300 -204589364 - MER5C DNA MER1_type -1 323 47 673 291 33 0 chr1 77604413 77604623 -204589041 - MIR SINE MIR -10 252 36 241 265 218 58 chr1 77604679 77605041 -204588623 - L2 LINE L2 -578 2736 2317 913 233 220 40 chr1 77605322 77605770 -204587894 + L2 LINE L2 2772 3308 -5 2104 138 3 3 chr1 77605905 77606217 -204587447 + AluSx SINE Alu 1 312 0 336 200 118 0 chr1 77606287 77606372 -204587292 - L1M4 LINE L1 -3321 2825 2731 528 255 143 6 chr1 77606391 77606552 -204587112 - MIR SINE MIR -78 184 2 397 305 56 14 chr1 77607840 77608003 -204585661 - MIR SINE MIR -36 172 30 456 19 0 0 chr1 77608035 77608088 -204585576 + (TCCA)n Simple_repeat Simple_repeat 3 55 0 375 317 42 8 chr1 77608103 77608223 -204585441 - L2 LINE L2 -4 3268 3145 1846 153 20 3 chr1 77609027 77609321 -204584343 - AluJo SINE Alu -11 301 3 195 388 58 19 chr1 77609580 77609683 -204583981 + L2 LINE L2 3139 3245 -27 429 167 104 10 chr1 77611275 77611371 -204582293 - MIR SINE MIR -11 251 147 785 288 55 35 chr1 77611477 77612116 -204581548 - L1MC/D LINE L1 -743 5403 5103 488 285 15 15 chr1 77612778 77612908 -204580756 - MER5B DNA MER1_type -48 130 1 223 272 24 64 chr1 77613135 77613260 -204580404 + MIR SINE MIR 117 236 -26 415 231 120 19 chr1 77614501 77614609 -204579055 - MER69 DNA AcHobo -1107 119 1 525 294 125 27 chr1 77614727 77614812 -204578852 - L2 LINE L2 -2228 1086 1011 184 29 29 29 chr1 77614812 77614846 -204578818 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 525 294 125 27 chr1 77614846 77615168 -204578496 - L2 LINE L2 -2303 1011 639 328 296 95 17 chr1 77615533 77615712 -204577952 - MIR SINE MIR -50 212 20 242 319 214 16 chr1 77616493 77616866 -204576798 - L2 LINE L2 -1006 2308 1862 597 246 0 0 chr1 77616867 77616977 -204576687 + MER81 DNA DNA 1 110 -4 1487 120 22 4 chr1 77617052 77617289 -204576375 - L1MC1 LINE L1 -23 6310 6075 1164 234 67 10 chr1 77617837 77618175 -204575489 + L1ME1 LINE L1 5808 6321 -13 1745 148 27 17 chr1 77618490 77618788 -204574876 - AluSx SINE Alu -11 301 1 346 229 84 23 chr1 77618789 77618920 -204574744 + LTR68 LTR ERV1 22 160 -580 908 257 58 24 chr1 77619395 77619746 -204573918 + L1MEd LINE L1 932 1253 -4866 4997 162 29 12 chr1 77619817 77620817 -204572847 - L1MB7 LINE L1 0 6184 5170 202 227 0 0 chr1 77622121 77622165 -204571499 + L2 LINE L2 3262 3305 -8 225 0 0 0 chr1 77622527 77622552 -204571112 + (CAGG)n Simple_repeat Simple_repeat 4 28 0 2637 130 30 62 chr1 77623212 77623681 -204569983 - LTR32 LTR ERVL -5 466 13 6224 154 18 6 chr1 77623721 77623991 -204569673 + L1PB1 LINE L1 4130 4395 -1756 396 0 0 0 chr1 77623991 77624035 -204569629 + (TAA)n Simple_repeat Simple_repeat 2 45 0 6224 154 18 6 chr1 77624035 77625412 -204568252 + L1PB1 LINE L1 4395 5808 -343 279 0 0 0 chr1 77625412 77625443 -204568221 + (TA)n Simple_repeat Simple_repeat 1 31 0 6224 154 18 6 chr1 77625443 77625785 -204567879 + L1PB1 LINE L1 5808 6144 -7 429 233 125 3 chr1 77625786 77625935 -204567729 - MER3 DNA MER1_type -55 154 9 351 203 0 34 chr1 77626165 77626283 -204567381 + GA-rich Low_complexity Low_complexity 2 115 0 794 159 6 28 chr1 77626299 77626481 -204567183 + GA-rich Low_complexity Low_complexity 3 180 0 262 200 18 0 chr1 77626693 77626748 -204566916 + Charlie7 DNA MER1_type 1632 1687 -925 2567 46 7 0 chr1 77626901 77627208 -204566456 + AluY SINE Alu 1 309 -2 674 232 42 75 chr1 77627681 77628082 -204565582 - L1MB7 LINE L1 -1640 4506 4119 * 739 255 56 70 chr1 77628067 77628636 -204565028 - L1MEc LINE L1 -4822 1439 700 546 324 28 6 chr1 77629486 77629662 -204564002 - MIR SINE MIR -81 181 2 216 303 159 58 chr1 77630372 77630917 -204562747 + L2 LINE L2 722 1367 -1947 1488 232 51 86 chr1 77630917 77631442 -204562222 - MLT1J LTR MaLR -4 507 1 216 303 159 58 chr1 77631442 77631656 -204562008 + L2 LINE L2 1367 1558 -1756 260 167 0 0 chr1 77631660 77631708 -204561956 + L1MA10 LINE L1 6280 6327 -7 221 0 35 0 chr1 77631838 77631867 -204561797 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 354 191 24 24 chr1 77633684 77633768 -204559896 + LTR33A LTR ERVL 440 523 0 3677 104 48 16 chr1 77634618 77634655 -204559009 - L1MA4A LINE L1 -4 6299 6265 3053 90 0 5 chr1 77634655 77635032 -204558632 - THE1C LTR MaLR 0 375 1 3677 104 48 16 chr1 77635032 77635561 -204558103 - L1MA4A LINE L1 -38 6265 5715 245 31 0 0 chr1 77635604 77635636 -204558028 + HY1 scRNA scRNA 80 111 -1 1408 43 0 6 chr1 77635650 77635813 -204557851 + L1PA3 LINE L1 5994 6155 0 260 290 0 0 chr1 77636550 77636619 -204557045 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 512 221 201 0 chr1 77636948 77637097 -204556567 + MER5A DNA MER1_type 11 189 0 2060 274 66 39 chr1 77637817 77638546 -204555118 - L1M4c LINE L1 -4291 2534 1826 2268 92 0 20 chr1 77638546 77638849 -204554815 - AluY SINE Alu -14 297 1 2060 274 66 39 chr1 77638849 77639581 -204554083 - L1M4c LINE L1 -4999 1826 877 1541 161 0 84 chr1 77639582 77639722 -204553942 - AluJo SINE Alu -10 302 199 2159 118 14 3 chr1 77639722 77640018 -204553646 + AluSq SINE Alu 1 299 -14 1541 161 0 84 chr1 77640018 77640176 -204553488 - AluJo SINE Alu -113 199 29 258 279 54 45 chr1 77640219 77640330 -204553334 - L1M4c LINE L1 -5651 891 780 321 277 8 17 chr1 77640709 77640828 -204552836 - L1M4c LINE L1 -6360 182 65 206 263 0 0 chr1 77641929 77641967 -204551697 - MER91A DNA MER1_type -147 49 12 269 285 78 83 chr1 77642107 77642300 -204551364 - MLT1K LTR MaLR -394 194 3 275 246 34 59 chr1 77642322 77642440 -204551224 + MER103 DNA DNA 51 165 -1 345 324 83 7 chr1 77643004 77643149 -204550515 + MIR SINE MIR 15 170 -92 465 284 68 32 chr1 77643404 77643654 -204550010 + MIR SINE MIR 2 260 -2 956 294 159 22 chr1 77644466 77645270 -204548394 + L2 LINE L2 2393 3313 0 1178 190 58 19 chr1 77646055 77646475 -204547189 - MLT1D LTR MaLR 0 505 1 555 235 13 47 chr1 77646786 77646935 -204546729 + MIR SINE MIR 1 144 -118 336 236 14 0 chr1 77646937 77647009 -204546655 - L2 LINE L2 -1 3312 3240 187 243 294 40 chr1 77647235 77647412 -204546252 - L2 LINE L2 -61 3252 3031 207 162 0 0 chr1 77647529 77647566 -204546098 + (CA)n Simple_repeat Simple_repeat 2 38 0 354 267 50 20 chr1 77649212 77649313 -204544351 + L2 LINE L2 3210 3313 0 192 265 235 20 chr1 77649363 77649465 -204544199 + MIR SINE MIR 21 144 -64 918 281 74 62 chr1 77650157 77650739 -204542925 + L2 LINE L2 2726 3313 0 1141 170 36 31 chr1 77650874 77651097 -204542567 - AluJo SINE Alu -3 309 86 603 179 93 12 chr1 77651659 77651821 -204541843 - MER104 DNA Tc2 0 180 6 182 377 14 0 chr1 77651823 77651892 -204541772 + MIR SINE MIR 82 151 -111 199 254 136 0 chr1 77651896 77651955 -204541709 - L2 LINE L2 -1 3312 3246 340 239 64 9 chr1 77651957 77652066 -204541598 - LTR67 LTR ERVL -14 543 429 265 182 19 9 chr1 77652502 77652612 -204541052 + GA-rich Low_complexity Low_complexity 1 111 0 477 179 19 19 chr1 77652672 77652778 -204540886 + L2 LINE L2 1914 2019 -1295 11453 156 25 21 chr1 77652923 77655951 -204537713 - L1PBa LINE L1 -1734 5128 2086 7638 52 17 0 chr1 77655951 77657201 -204536463 - L1PA8 LINE L1 -2 6170 4916 11453 156 25 21 chr1 77657201 77657899 -204535765 - L1PBa LINE L1 -4776 2086 1392 865 221 9 18 chr1 77657877 77658094 -204535570 - L1PBa LINE L1 -6648 215 1 * 512 287 87 20 chr1 77658193 77658415 -204535249 - MIR SINE MIR -24 238 1 271 351 144 20 chr1 77658822 77659121 -204534543 + L2 LINE L2 2639 2974 -340 306 260 183 0 chr1 77659278 77659382 -204534282 + L2 LINE L2 3191 3313 0 293 299 52 15 chr1 77660005 77660139 -204533525 + L2 LINE L2 2932 3070 -202 612 218 49 53 chr1 77660443 77660693 -204532971 + L1ME3A LINE L1 5726 5966 -212 2178 134 6 6 chr1 77660783 77661126 -204532538 - L1MC1 LINE L1 -150 6183 5841 514 311 77 19 chr1 77661151 77661514 -204532150 - L1MEc LINE L1 -4036 2360 1977 230 289 33 22 chr1 77661763 77661853 -204531811 - L2 LINE L2 0 3272 3182 345 289 0 11 chr1 77662281 77662371 -204531293 - MLT1I LTR MaLR -277 132 44 2385 181 15 8 chr1 77662374 77662767 -204530897 + MSTD LTR MaLR 1 396 0 2500 219 20 4 chr1 77663319 77663813 -204529851 + MLT1D LTR MaLR 3 504 -1 337 291 73 61 chr1 77664106 77664174 -204529490 + MIR SINE MIR 25 91 -171 1942 194 47 14 chr1 77664174 77664535 -204529129 + MLT1A2 LTR MaLR 1 373 -1 337 291 73 61 chr1 77664535 77664631 -204529033 + MIR SINE MIR 91 191 -71 2392 133 39 21 chr1 77664681 77665064 -204528600 + MLT1B LTR MaLR 1 390 0 572 192 40 0 chr1 77665691 77665790 -204527874 + MER6B DNA MER2_type 1 103 -173 2323 105 0 0 chr1 77665983 77666279 -204527385 - AluSx SINE Alu -16 296 1 336 316 109 78 chr1 77666279 77666782 -204526882 + L2 LINE L2 2093 2611 -703 838 209 76 14 chr1 77666833 77667043 -204526621 + MIR SINE MIR 8 230 -32 25 0 0 0 chr1 77667135 77667160 -204526504 + AT_rich Low_complexity Low_complexity 1 25 0 291 327 19 19 chr1 77667219 77667326 -204526338 + L2 LINE L2 3116 3222 -50 394 324 70 0 chr1 77667525 77667667 -204525997 + L2 LINE L2 3121 3272 0 303 104 21 0 chr1 77667834 77667882 -204525782 - MLT1J LTR MaLR -23 488 440 1961 148 3 0 chr1 77667887 77668190 -204525474 + AluJb SINE Alu 1 304 -8 895 251 204 20 chr1 77668198 77668600 -204525064 - MLT1J LTR MaLR -33 478 3 247 241 100 47 chr1 77668685 77668855 -204524809 + L1MC5 LINE L1 7441 7619 -342 315 230 7 96 chr1 77668865 77669000 -204524664 + L1MC5 LINE L1 7661 7783 -178 2052 91 17 20 chr1 77669003 77669300 -204524364 + AluSc SINE Alu 1 296 -13 6165 84 18 6 chr1 77670311 77671151 -204522513 - L1PA13 LINE L1 -7 6156 5307 285 293 95 0 chr1 77671501 77671617 -204522047 - MER103 DNA DNA -31 135 9 230 326 112 0 chr1 77672085 77672183 -204521481 + L2 LINE L2 3205 3313 0 786 245 70 48 chr1 77672247 77672561 -204521103 + MER34 LTR ERV1 1 523 -184 320 42 104 0 chr1 77672585 77672633 -204521031 - MER57A LTR ERV1 0 403 351 2051 105 23 43 chr1 77672669 77672973 -204520691 + AluSx SINE Alu 1 298 -14 515 123 0 0 chr1 77672992 77673065 -204520599 - MER57A LTR ERV1 -330 73 1 721 175 159 69 chr1 77673132 77673451 -204520213 - LTR54B LTR ERV1 -112 386 1 6601 183 29 45 chr1 77673451 77674794 -204518870 - LTR49-int LTR ERV1 -393 7144 5824 4913 195 107 86 chr1 77675122 77676023 -204517641 - LTR49-int LTR ERV1 -1498 3438 2558 191 36 36 0 chr1 77676023 77676051 -204517613 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 243 0 0 0 chr1 77676052 77676079 -204517585 + (GA)n Simple_repeat Simple_repeat 2 28 0 466 173 0 13 chr1 77676082 77676157 -204517507 - FLAM_C SINE Alu -34 109 36 4913 195 107 86 chr1 77676157 77677402 -204516262 - LTR49-int LTR ERV1 -2379 2557 1707 507 219 19 0 chr1 77677489 77677594 -204516070 - LTR49-int LTR ERV1 -2873 3458 3352 389 273 180 7 chr1 77678757 77678896 -204514768 - MIR3 SINE MIR -27 181 19 618 276 0 0 chr1 77678975 77679109 -204514555 - L2 LINE L2 0 3272 3139 794 175 0 0 chr1 77679642 77679756 -204513908 + FLAM_C SINE Alu 1 114 -19 342 0 0 0 chr1 77679758 77679796 -204513868 + (CA)n Simple_repeat Simple_repeat 1 38 0 2238 85 7 0 chr1 77679800 77680171 -204513493 + AluSp SINE Alu 1 373 0 1425 242 108 9 chr1 77680290 77680744 -204512920 + L2 LINE L2 2253 2751 -563 866 259 92 63 chr1 77680817 77681199 -204512465 + L2 LINE L2 2915 3307 -6 1709 154 7 7 chr1 77681601 77681886 -204511778 + AluJo SINE Alu 1 285 -27 243 0 0 0 chr1 77681886 77681913 -204511751 + (TA)n Simple_repeat Simple_repeat 2 28 0 534 212 43 43 chr1 77682616 77682800 -204510864 - MIR SINE MIR 0 262 79 419 297 88 33 chr1 77683325 77683598 -204510066 + L2 LINE L2 2357 2644 -670 * 445 316 84 77 chr1 77683583 77684036 -204509628 + L2 LINE L2 2809 3264 -49 205 152 0 0 chr1 77684100 77684133 -204509531 + (CTA)n Simple_repeat Simple_repeat 3 35 0 4221 184 41 17 chr1 77684176 77685056 -204508608 + L1MD1 LINE L1 5342 6242 0 875 122 38 23 chr1 77685099 77685230 -204508434 + FLAM_C SINE Alu 1 133 0 449 298 83 6 chr1 77685230 77685398 -204508266 - ERVL LTR ERVL -2740 3024 2844 1334 257 46 7 chr1 77685461 77685768 -204507896 - Zaphod DNA AcHobo -3624 407 89 1416 212 158 25 chr1 77685883 77686288 -204507376 - LTR33 LTR ERVL -16 505 47 189 121 0 0 chr1 77686563 77686596 -204507068 + (TCTTG)n Simple_repeat Simple_repeat 5 37 0 446 211 89 16 chr1 77687172 77687295 -204506369 - MER112 DNA MER1_type 0 260 129 1992 115 3 67 chr1 77687309 77687639 -204506025 + AluSc SINE Alu 1 309 0 187 291 116 12 chr1 77688466 77688552 -204505112 + MIR3 SINE MIR 72 166 -42 * 433 269 93 0 chr1 77688549 77688657 -204505007 + MIR SINE MIR 128 245 -17 731 233 43 163 chr1 77689110 77689500 -204504164 + HAL1 LINE L1 8 324 -2183 2409 117 135 13 chr1 77689500 77689885 -204503779 - MSTB1 LTR MaLR 0 432 1 731 233 43 163 chr1 77689885 77690004 -204503660 + HAL1 LINE L1 324 456 -2051 642 158 0 68 chr1 77690004 77690137 -204503527 + L2 LINE L2 3190 3313 0 610 246 146 93 chr1 77690143 77690650 -204503014 + HAL1 LINE L1 503 1036 -1471 269 167 0 0 chr1 77691043 77691085 -204502579 - HERVS71 LTR ERV1 -429 8549 8508 186 43 0 0 chr1 77691085 77691108 -204502556 + (A)n Simple_repeat Simple_repeat 1 23 0 455 286 34 20 chr1 77691230 77691377 -204502287 - MLT1K LTR MaLR 0 588 440 204 139 28 0 chr1 77691441 77691477 -204502187 + (TG)n Simple_repeat Simple_repeat 2 38 0 323 250 65 0 chr1 77692161 77692253 -204501411 - Charlie7 DNA MER1_type -2 2610 2513 612 214 7 29 chr1 77692927 77693067 -204500597 - L2 LINE L2 -1 3312 3176 2563 264 47 6 chr1 77693125 77693832 -204499832 + L1ME LINE L1 37 772 -5624 291 274 0 0 chr1 77693884 77693968 -204499696 + L1ME LINE L1 5432 5515 -724 21 0 0 0 chr1 77694236 77694257 -204499407 + AT_rich Low_complexity Low_complexity 1 21 0 254 185 31 0 chr1 77695120 77695185 -204498479 + GA-rich Low_complexity Low_complexity 6 72 0 997 218 51 14 chr1 77695383 77695599 -204498065 - MER58A DNA MER1_type 0 224 1 279 333 0 0 chr1 77696032 77696104 -204497560 - L3 LINE CR1 -111 1466 1395 22 0 0 0 chr1 77696602 77696624 -204497040 + AT_rich Low_complexity Low_complexity 1 22 0 459 262 49 16 chr1 77696897 77697019 -204496645 - MIR3 SINE MIR -33 175 50 261 265 0 0 chr1 77697147 77697215 -204496449 + A-rich Low_complexity Low_complexity 1 68 0 431 296 68 51 chr1 77697248 77697542 -204496122 - LTR16C LTR ERVL -189 302 4 459 270 286 0 chr1 77697783 77697972 -204495692 + MIR SINE MIR 19 261 -1 880 174 277 0 chr1 77698049 77698302 -204495362 - MER5C DNA MER1_type 0 324 2 305 287 46 46 chr1 77699083 77699191 -204494473 + L2 LINE L2 3158 3265 -7 23 0 0 0 chr1 77699606 77699629 -204494035 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 77699839 77699864 -204493800 + GC_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr1 77699890 77699918 -204493746 + (GGA)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr1 77700031 77700061 -204493603 + GC_rich Low_complexity Low_complexity 1 30 0 183 162 0 0 chr1 77700115 77700152 -204493512 + GA-rich Low_complexity Low_complexity 1 37 0 183 100 0 0 chr1 77700309 77700339 -204493325 + (CTGGGG)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr1 77700713 77700734 -204492930 + AT_rich Low_complexity Low_complexity 1 21 0 321 309 86 20 chr1 77702289 77702441 -204491223 + MIR SINE MIR 98 259 -3 225 65 0 0 chr1 77702548 77702579 -204491085 + (TG)n Simple_repeat Simple_repeat 1 31 0 2350 83 3 3 chr1 77703033 77703334 -204490330 + AluSp SINE Alu 2 302 -11 413 197 34 31 chr1 77703624 77703772 -204489892 + MIR SINE MIR 56 252 -10 184 257 188 40 chr1 77704831 77704932 -204488732 - MIR SINE MIR -72 136 21 2419 83 0 0 chr1 77705612 77705912 -204487752 + AluY SINE Alu 1 300 -11 561 290 45 19 chr1 77706897 77707052 -204486612 + MER91A DNA MER1_type 1 159 -37 284 259 17 0 chr1 77707084 77707142 -204486522 + MER91A DNA MER1_type 138 196 0 2073 150 0 6 chr1 77708795 77709109 -204484555 - AluJb SINE Alu 0 312 1 186 43 0 0 chr1 77709646 77709669 -204483995 + (TG)n Simple_repeat Simple_repeat 2 24 0 2084 125 147 5 chr1 77710145 77710520 -204483144 + MSTA LTR MaLR 1 428 0 590 148 9 0 chr1 77710574 77710689 -204482975 - L1MCa LINE L1 -5387 1039 924 3484 161 59 34 chr1 77710699 77711457 -204482207 - L1MCa LINE L1 -5642 784 8 1117 239 24 8 chr1 77711578 77711829 -204481835 + MIR SINE MIR 3 257 -5 291 241 52 52 chr1 77711841 77711957 -204481707 - L1ME LINE L1 -359 5762 5647 249 172 47 47 chr1 77711957 77712021 -204481643 - MLT1L LTR MaLR 0 615 552 1943 175 0 34 chr1 77712042 77712420 -204481244 + MLT1A1 LTR MaLR 1 365 0 580 302 181 42 chr1 77712434 77712887 -204480777 - MLT1K LTR MaLR -57 531 16 316 281 42 66 chr1 77712900 77713216 -204480448 - L1ME LINE L1 -477 5644 5342 446 206 5 121 chr1 77713219 77713418 -204480246 - MER104 DNA Tc2 -4 176 1 1945 143 7 0 chr1 77713427 77713721 -204479943 + AluJb SINE Alu 1 296 -16 547 326 58 17 chr1 77713780 77714139 -204479525 - L1ME LINE L1 -896 5250 4877 6660 97 11 40 chr1 77714200 77714999 -204478665 - L1MA3 LINE L1 0 6305 5543 2518 104 14 19 chr1 77714999 77715365 -204478299 - THE1B LTR MaLR 0 364 1 6660 97 11 40 chr1 77715365 77715754 -204477910 - L1MA3 LINE L1 -762 5543 5144 * 8421 149 44 8 chr1 77715744 77718890 -204474774 - L1 LINE L1 -2154 5411 2154 383 298 124 33 chr1 77718926 77718985 -204474679 - L1ME LINE L1 -1357 4789 4737 321 258 55 66 chr1 77718985 77719167 -204474497 + MER104 DNA MER2_type 1 180 0 383 298 124 33 chr1 77719167 77719349 -204474315 - L1ME LINE L1 -1409 4737 4526 1929 147 0 7 chr1 77719416 77719708 -204473956 - AluJb SINE Alu -22 290 1 1848 142 60 38 chr1 77719740 77720107 -204473557 + THE1C LTR MaLR 1 375 0 1769 173 89 3 chr1 77720434 77720770 -204472894 - MLT1A1 LTR MaLR 0 365 1 380 329 82 0 chr1 77720834 77720980 -204472684 + MIR3 SINE MIR 36 193 -15 184 316 216 41 chr1 77721656 77721976 -204471688 - L2 LINE L2 -338 2976 2601 1365 218 61 27 chr1 77722030 77722660 -204471004 - MLT1E3 LTR MaLR 0 624 1 210 333 109 6 chr1 77722792 77722975 -204470689 - L2 LINE L2 -925 2389 2188 536 318 120 9 chr1 77723310 77723543 -204470121 - MIR SINE MIR 0 262 4 496 126 48 19 chr1 77723684 77723787 -204469877 + MER53 DNA DNA 1 106 -83 211 216 34 80 chr1 77723962 77724050 -204469614 - MIR SINE MIR -56 206 123 4174 162 34 19 chr1 77725077 77725934 -204467730 + L1MA9 LINE L1 5373 6242 -70 376 300 22 40 chr1 77727669 77727892 -204465772 + HERVL74 LTR ERVL 3110 3328 -2357 24 77 0 0 chr1 77730667 77730719 -204462945 + AT_rich Low_complexity Low_complexity 1 52 0 2277 115 0 0 chr1 77731420 77731724 -204461940 - AluSx SINE Alu -8 304 1 223 245 143 41 chr1 77732294 77732392 -204461272 - MIR SINE MIR 0 262 155 2154 145 42 92 chr1 77732393 77732966 -204460698 + LTR38B LTR ERV1 2 545 -65 5253 95 15 4 chr1 77732972 77733762 -204459902 - L1PA13 LINE L1 -1 6162 5364 376 157 29 0 chr1 77733763 77733833 -204459831 + LTR36 LTR ERV1 540 611 0 188 262 0 0 chr1 77733834 77733876 -204459788 - MIR SINE MIR -105 157 116 2201 182 112 4 chr1 77733980 77734435 -204459229 + MLT1D LTR MaLR 2 505 0 34 24 0 0 chr1 77734488 77734529 -204459135 + AT_rich Low_complexity Low_complexity 1 41 0 226 360 0 0 chr1 77734544 77734633 -204459031 - MIR SINE MIR -4 258 170 297 251 95 56 chr1 77734633 77734812 -204458852 + MLT1J LTR MaLR 1 186 -325 270 167 45 15 chr1 77734931 77734997 -204458667 + MLT1J1 LTR MaLR 359 426 -20 322 267 35 17 chr1 77735026 77735142 -204458522 - MIR SINE MIR -87 175 58 283 299 13 0 chr1 77735153 77735230 -204458434 - MIR SINE MIR -135 127 50 320 269 67 67 chr1 77735320 77735469 -204458195 - MIR3 SINE MIR -8 200 52 22 35 0 0 chr1 77735692 77735721 -204457943 + AT_rich Low_complexity Low_complexity 1 29 0 2082 112 11 7 chr1 77735735 77736042 -204457622 - AluY SINE Alu 0 311 1 1008 246 31 7 chr1 77736824 77737117 -204456547 - L1MB8 LINE L1 -4 6174 5875 830 195 0 30 chr1 77737433 77737602 -204456062 + MER2 DNA MER2_type 1 164 -181 35 24 0 0 chr1 77737605 77737647 -204456017 + AT_rich Low_complexity Low_complexity 1 42 0 202 142 66 9 chr1 77737647 77737753 -204455911 + (TA)n Simple_repeat Simple_repeat 1 112 0 230 68 45 0 chr1 77737757 77737801 -204455863 + MER2 DNA MER2_type 154 199 -146 7501 160 28 41 chr1 77737824 77739611 -204454053 + L1MA9 LINE L1 3713 5459 -853 1641 117 113 42 chr1 77739611 77739894 -204453770 + AluSx SINE Alu 1 303 -9 7501 160 28 41 chr1 77739894 77740509 -204453155 + L1MA9 LINE L1 5459 6081 -231 580 132 47 0 chr1 77740511 77740617 -204453047 + L1MA9 LINE L1 6180 6290 -22 182 37 37 0 chr1 77740624 77740651 -204453013 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 2107 230 31 41 chr1 77741306 77742223 -204451441 - L1ME1 LINE L1 -302 6124 5222 726 218 73 53 chr1 77742323 77742363 -204451301 - L1ME1 LINE L1 -1158 5248 5210 261 0 0 0 chr1 77742363 77742392 -204451272 + (TTG)n Simple_repeat Simple_repeat 2 30 0 726 218 73 53 chr1 77742392 77742410 -204451254 - L1ME1 LINE L1 -1196 5210 5194 1339 195 31 80 chr1 77742410 77742799 -204450865 - MLT1A2 LTR MaLR -4 370 1 726 218 73 53 chr1 77742799 77743042 -204450622 - L1ME1 LINE L1 -1212 5194 4940 2115 95 3 3 chr1 77743042 77743327 -204450337 + AluSq SINE Alu 1 285 -28 209 134 24 61 chr1 77743338 77743420 -204450244 + (TTA)n Simple_repeat Simple_repeat 2 80 0 1810 226 61 37 chr1 77743420 77744071 -204449593 - L1ME1 LINE L1 -1458 4948 4282 2233 236 26 25 chr1 77744072 77744231 -204449433 - L1ME1 LINE L1 -2240 4166 4009 2124 110 7 7 chr1 77744231 77744521 -204449143 - AluSx SINE Alu -22 290 1 2233 236 26 25 chr1 77744521 77745201 -204448463 - L1ME1 LINE L1 -2397 4009 3326 2269 165 21 26 chr1 77745203 77745628 -204448036 + MSTA LTR MaLR 1 423 -5 693 235 81 0 chr1 77745631 77745878 -204447786 - L1ME1 LINE L1 -3092 3314 3048 1649 117 4 4 chr1 77746001 77746232 -204447432 - AluSx SINE Alu -18 294 64 1208 105 6 0 chr1 77746232 77746394 -204447270 - AluY SINE Alu -148 163 1 432 300 0 0 chr1 77746394 77746514 -204447150 - L1ME1 LINE L1 -6266 143 24 1180 214 81 55 chr1 77746538 77747103 -204446561 - L1M4 LINE L1 -4990 1552 973 1472 163 151 12 chr1 77747106 77747437 -204446227 - MSTA LTR MaLR -51 377 1 6802 53 34 2 chr1 77747728 77748884 -204444780 - L1PA6 LINE L1 0 6154 4983 16837 66 20 0 chr1 77748984 77751348 -204442316 - L1PA6 LINE L1 -1579 4567 2157 6766 153 31 28 chr1 77751456 77752764 -204440900 - L1PA6 LINE L1 -4823 1323 12 2115 133 7 0 chr1 77752817 77753117 -204440547 - AluSq SINE Alu -9 304 3 1251 224 19 85 chr1 77753355 77753780 -204439884 - MLT2C1 LTR ERVL 0 397 1 221 338 167 15 chr1 77753780 77753984 -204439680 - L2 LINE L2 -559 2755 2521 214 365 64 23 chr1 77755807 77756026 -204437638 - L2 LINE L2 -556 2758 2531 230 264 0 0 chr1 77756120 77756173 -204437491 + L2 LINE L2 3209 3261 -11 446 254 118 65 chr1 77757813 77758080 -204435584 + L1ME4a LINE L1 5650 5952 -169 405 58 0 0 chr1 77758080 77758132 -204435532 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 446 254 118 65 chr1 77758132 77758312 -204435352 + L1ME4a LINE L1 5952 6121 0 233 209 0 0 chr1 77758605 77758648 -204435016 - L2 LINE L2 -5 3308 3266 597 306 20 15 chr1 77758814 77759013 -204434651 + MIR SINE MIR 60 259 -3 2128 166 22 11 chr1 77759149 77759510 -204434154 + MLT1A1 LTR MaLR 1 365 0 353 324 23 42 chr1 77760230 77760486 -204433178 + L2 LINE L2 2422 2758 -556 2527 168 37 33 chr1 77760588 77761107 -204432557 + Charlie1b DNA MER1_type 2 522 -1 2298 131 0 0 chr1 77761368 77761680 -204431984 - AluSx SINE Alu 0 312 1 2170 104 0 7 chr1 77761686 77761997 -204431667 - AluSx SINE Alu 0 309 1 352 209 58 0 chr1 77762075 77762172 -204431492 - MIR SINE MIR -76 132 27 1612 211 19 53 chr1 77762194 77762607 -204431057 + MER63B DNA MER1_type 4 402 -34 269 278 26 26 chr1 77762611 77762726 -204430938 + MER5A DNA MER1_type 38 152 -37 186 318 0 16 chr1 77762774 77762837 -204430827 - L2 LINE L2 0 3272 3211 190 385 167 0 chr1 77762856 77762952 -204430712 + L2 LINE L2 3146 3257 -15 276 303 62 35 chr1 77763077 77763222 -204430442 + MIR SINE MIR 83 231 -31 * 531 272 39 107 chr1 77763189 77763498 -204430166 + L2 LINE L2 3026 3313 0 557 123 0 0 chr1 77763569 77763642 -204430022 + AluSg/x SINE Alu 214 286 -24 230 51 51 0 chr1 77763654 77763693 -204429971 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 476 256 38 23 chr1 77764201 77764334 -204429330 + MIR SINE MIR 11 145 -117 383 355 57 43 chr1 77764335 77764636 -204429028 - L2 LINE L2 -1 3271 2967 290 209 181 38 chr1 77764773 77764878 -204428786 - MIR3 SINE MIR -34 174 55 756 157 112 11 chr1 77765725 77765903 -204427761 - MER33 DNA MER1_type -109 215 20 1239 255 49 77 chr1 77766281 77766791 -204426873 + MLT1J LTR MaLR 1 496 -15 5617 246 53 17 chr1 77767009 77768385 -204425279 + L1MD2 LINE L1 2841 4297 -1849 2871 102 11 0 chr1 77768385 77768756 -204424908 - THE1C LTR MaLR 0 375 1 5617 246 53 17 chr1 77768756 77769178 -204424486 + L1MD2 LINE L1 4297 4703 -1443 1429 219 98 34 chr1 77769182 77769589 -204424075 - MLT1D LTR MaLR 0 505 73 346 288 0 0 chr1 77769588 77769661 -204424003 - Tigger2 DNA MER2_type -11 2707 2635 * 6400 144 12 4 chr1 77769667 77771361 -204422303 - L1PB1 LINE L1 -5 6146 4439 3071 176 11 21 chr1 77771361 77771976 -204421688 + L1PB1 LINE L1 3814 4422 -1724 2352 119 29 95 chr1 77771977 77772431 -204421233 - Tigger2 DNA MER2_type -57 2661 2238 1577 139 89 18 chr1 77772551 77772831 -204420833 + MSTA LTR MaLR 129 428 0 4963 189 42 34 chr1 77772831 77774183 -204419481 + L1MD2 LINE L1 4895 6255 -104 191 296 68 68 chr1 77774497 77774659 -204419005 - MIR SINE MIR -42 220 59 185 333 61 61 chr1 77774860 77774992 -204418672 - L2 LINE L2 -189 3083 2952 1849 149 143 62 chr1 77775123 77775626 -204418038 - L1MDb LINE L1 -4987 1556 1013 435 227 53 53 chr1 77776237 77776369 -204417295 + MER39 LTR ERV1 1 132 -575 767 236 35 35 chr1 77776383 77776459 -204417205 + LTR48B LTR ERV1 437 512 -132 2295 128 42 36 chr1 77776459 77776819 -204416845 + THE1B LTR MaLR 1 362 -2 767 236 35 35 chr1 77776819 77776945 -204416719 + LTR48B LTR ERV1 511 639 -5 2580 144 27 25 chr1 77776945 77777389 -204416275 + MER65A LTR ERV1 1 445 0 212 297 78 0 chr1 77777392 77777456 -204416208 - L3 LINE CR1 -1156 421 353 606 291 57 72 chr1 77777526 77777631 -204416033 - L1MDb LINE L1 -6142 398 293 216 0 0 0 chr1 77777631 77777655 -204416009 + (TG)n Simple_repeat Simple_repeat 1 24 0 606 291 57 72 chr1 77777655 77777938 -204415726 - L1MDb LINE L1 -6247 293 16 349 359 125 25 chr1 77778003 77778691 -204414973 + L2 LINE L2 1989 2745 -569 2446 66 3 0 chr1 77779157 77779459 -204414205 + AluY SINE Alu 1 303 -8 531 244 178 0 chr1 77779459 77779639 -204414025 + MIR SINE MIR 5 216 -46 1729 147 29 0 chr1 77779784 77780057 -204413607 + AluJb SINE Alu 2 282 -30 297 0 0 0 chr1 77780057 77780090 -204413574 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chr1 77781753 77781778 -204411886 + AT_rich Low_complexity Low_complexity 1 25 0 2477 37 17 0 chr1 77781840 77782134 -204411530 + AluY SINE Alu 1 299 -12 22 0 0 0 chr1 77782266 77782288 -204411376 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr1 77784836 77784869 -204408795 + (TA)n Simple_repeat Simple_repeat 2 34 0 2020 140 0 0 chr1 77785517 77785809 -204407855 - AluJb SINE Alu -4 308 17 943 118 0 22 chr1 77786532 77786667 -204406997 + FLAM_C SINE Alu 2 133 0 971 229 103 23 chr1 77787715 77788244 -204405420 + L1M4 LINE L1 4849 5426 -757 1180 149 96 58 chr1 77788791 77789052 -204404612 + AluJb SINE Alu 20 290 -22 1872 136 22 31 chr1 77789052 77789369 -204404295 + MER4D LTR ERV1 238 551 -352 1643 120 9 0 chr1 77789391 77789624 -204404040 + MER4D LTR ERV1 662 896 -7 1527 139 52 0 chr1 77789625 77789877 -204403787 + MER39B LTR ERV1 389 653 0 1108 235 87 38 chr1 77789891 77790299 -204403365 + MER65C-int LTR ERV1 704 2032 -2839 2528 145 66 7 chr1 77790458 77790913 -204402751 - LTR29 LTR ERV1 -140 482 1 1234 215 110 39 chr1 77790919 77791617 -204402047 + LTR57-int LTR ERVL 1128 1566 -3777 1296 192 47 49 chr1 77790936 77791046 -204402618 + MER65C-int LTR ERV1 1147 1256 -5502 1552 187 38 3 chr1 77791046 77791335 -204402329 + AluJo SINE Alu 1 299 -13 1296 192 47 49 chr1 77791335 77791661 -204402003 + MER65C-int LTR ERV1 1256 1935 -4823 452 260 24 67 chr1 77791730 77791938 -204401726 + MER65C-int LTR ERV1 2375 2573 -2550 702 183 134 45 chr1 77792171 77792373 -204401291 + MER65C-int LTR ERV1 3514 3733 -2865 1145 195 105 79 chr1 77792467 77793130 -204400534 + MER65C-int LTR ERV1 2482 4969 -1629 305 338 0 39 chr1 77793221 77793428 -204400236 + MER65C-int LTR ERV1 4382 4580 -291 19531 184 34 20 chr1 77793428 77794712 -204398952 + L1PA13 LINE L1 1 1265 -5549 8949 53 4 0 chr1 77794712 77795715 -204397949 + LTR13 LTR ERVK 1 1007 0 19531 184 34 20 chr1 77795715 77799376 -204394288 + L1PA13 LINE L1 1265 5083 -1731 348 24 0 0 chr1 77799376 77799417 -204394247 + (TAAAA)n Simple_repeat Simple_repeat 5 45 0 19531 184 34 20 chr1 77799417 77801172 -204392492 + L1PA13 LINE L1 5083 6811 -3 462 284 112 6 chr1 77801300 77801469 -204392195 + MER65C-int LTR ERV1 4685 4871 0 2517 176 13 17 chr1 77801471 77801931 -204391733 + MER65C LTR ERV1 4 461 0 2624 203 41 9 chr1 77801932 77802488 -204391176 + L1MD2 LINE L1 5785 6358 -1 216 355 166 19 chr1 77802705 77802970 -204390694 + L2 LINE L2 2945 3248 -24 190 289 0 0 chr1 77803148 77803193 -204390471 + L2 LINE L2 3210 3254 -18 * 278 366 95 17 chr1 77803185 77803366 -204390298 + MIR SINE MIR 21 216 -46 605 286 12 6 chr1 77803415 77803576 -204390088 - MIR SINE MIR -6 256 95 427 229 89 95 chr1 77804080 77804259 -204389405 + MER5A DNA MER1_type 4 181 -8 260 191 202 24 chr1 77804391 77804475 -204389189 + MIR SINE MIR 160 258 -4 5232 193 77 31 chr1 77804501 77805874 -204387790 - L1MC3 LINE L1 -170 7615 6179 6165 259 50 32 chr1 77805947 77806651 -204387013 - L1MCa LINE L1 -1399 5165 4475 2212 113 0 7 chr1 77806651 77806952 -204386712 - AluSc SINE Alu -10 299 1 6165 259 50 32 chr1 77806952 77807109 -204386555 - L1MCa LINE L1 -2089 4475 4322 2191 139 13 26 chr1 77807109 77807489 -204386175 + THE1C LTR MaLR 1 375 0 6165 259 50 32 chr1 77807489 77809640 -204384024 - L1MCa LINE L1 -2242 4322 2120 212 200 0 50 chr1 77809642 77809680 -204383984 + T-rich Low_complexity Low_complexity 1 37 -20 5843 98 27 3 chr1 77809680 77810798 -204382866 - L1PA14 LINE L1 -2 6159 5023 212 200 0 50 chr1 77810798 77810819 -204382845 + T-rich Low_complexity Low_complexity 36 57 0 9814 183 27 20 chr1 77810841 77814235 -204379429 - L1PA15 LINE L1 -27 7576 4162 4494 161 48 9 chr1 77814231 77815091 -204378573 - L1PA15 LINE L1 -5970 1615 723 * 411 335 22 31 chr1 77815575 77815933 -204377731 - L1PA15 LINE L1 -7226 355 1 1328 233 60 45 chr1 77815941 77816766 -204376898 - L1MCa LINE L1 -4537 2128 1201 793 180 30 0 chr1 77816766 77816959 -204376705 - MER6 DNA MER2_type 0 865 -62 779 189 66 25 chr1 77816971 77817214 -204376450 - L1MCa LINE L1 -4851 1194 942 23 78 0 0 chr1 77817229 77817280 -204376384 + AT_rich Low_complexity Low_complexity 1 51 0 1271 251 41 37 chr1 77817296 77817759 -204375905 - L1MCa LINE L1 -5117 928 464 608 131 0 9 chr1 77817875 77817982 -204375682 - MSTA LTR MaLR -322 106 1 332 231 0 0 chr1 77817982 77818047 -204375617 - L1MC3 LINE L1 -518 7267 7203 389 231 88 8 chr1 77818347 77818479 -204375185 - MIR SINE MIR -24 184 33 215 271 52 42 chr1 77818496 77818592 -204375072 - MIR SINE MIR -92 116 20 2072 172 12 21 chr1 77819333 77819666 -204373998 - L1MC3 LINE L1 -189 7596 7266 2114 153 88 13 chr1 77819666 77820064 -204373600 - MSTA LTR MaLR 0 428 1 2072 172 12 21 chr1 77820064 77820154 -204373510 - L1MC3 LINE L1 -519 7266 7177 689 202 18 30 chr1 77821026 77821194 -204372470 + MLT1J1 LTR MaLR 2 167 -279 642 209 8 0 chr1 77822637 77822771 -204370893 + MLT1J2 LTR MaLR 1 135 -315 240 215 0 46 chr1 77822776 77822841 -204370823 + MLT1I LTR MaLR 348 409 0 431 264 90 36 chr1 77822843 77823010 -204370654 - MIR SINE MIR -21 241 66 404 241 25 28 chr1 77823759 77823919 -204369745 + MIR SINE MIR 39 244 -18 35451 78 15 14 chr1 77824376 77830490 -204363174 - L1PA6 LINE L1 0 6154 38 2878 264 91 54 chr1 77831221 77831364 -204362300 - L1ME3A LINE L1 -85 6077 5941 2324 113 7 0 chr1 77831364 77831674 -204361990 - AluSx SINE Alu 0 312 1 2878 264 91 54 chr1 77831674 77833981 -204359683 - L1ME3A LINE L1 -221 5941 3332 1664 169 37 18 chr1 77833981 77834296 -204359368 - AluJb SINE Alu 0 324 5 2878 264 91 54 chr1 77834296 77834686 -204358978 - L1ME3A LINE L1 -2830 3332 2958 724 223 95 18 chr1 77834987 77835261 -204358403 - MER20B DNA MER1_type -1 782 488 1694 201 82 42 chr1 77835350 77835847 -204357817 - MER20B DNA MER1_type -261 522 6 29 0 0 0 chr1 77835986 77836015 -204357649 + AT_rich Low_complexity Low_complexity 1 29 0 1142 204 145 20 chr1 77836274 77836578 -204357086 + MER2 DNA MER2_type 2 343 -1 632 303 61 35 chr1 77836590 77836818 -204356846 + MIR SINE MIR 19 252 -10 242 331 44 44 chr1 77836890 77837071 -204356593 - MIR3 SINE MIR -5 203 23 186 279 0 29 chr1 77837412 77837480 -204356184 + MIR SINE MIR 70 135 -127 1154 133 0 5 chr1 77837480 77837668 -204355996 + MER49 LTR ERV1 177 363 -560 * 1268 193 19 38 chr1 77837666 77837982 -204355682 + MER49 LTR ERV1 614 923 0 443 200 78 0 chr1 77837982 77838097 -204355567 + MIR SINE MIR 135 258 -4 189 0 0 0 chr1 77838103 77838124 -204355540 + (TTA)n Simple_repeat Simple_repeat 3 23 0 503 292 8 0 chr1 77840585 77840705 -204352959 - L3 LINE CR1 -101 1476 1356 455 311 40 28 chr1 77841105 77841282 -204352382 - L3 LINE CR1 -499 1078 900 1619 174 0 36 chr1 77841424 77841729 -204351935 + AluJb SINE Alu 1 294 -18 342 0 0 0 chr1 77843512 77843550 -204350114 + (TG)n Simple_repeat Simple_repeat 1 38 0 504 249 210 24 chr1 77843802 77844135 -204349529 - L1ME4a LINE L1 -41 6080 5686 691 282 27 18 chr1 77844184 77844404 -204349260 + MIR SINE MIR 3 224 -38 541 286 49 44 chr1 77844441 77844644 -204349020 - MIR SINE MIR -12 250 47 349 337 6 62 chr1 77845065 77845243 -204348421 + MIR SINE MIR 56 223 -39 398 176 12 0 chr1 77845449 77845534 -204348130 + MER3 DNA MER1_type 123 208 -1 404 258 126 68 chr1 77846057 77846511 -204347153 + L1ME4a LINE L1 605 1084 -5035 716 313 8 4 chr1 77846524 77846780 -204346884 + HAL1 LINE L1 4 260 -2247 270 56 0 0 chr1 77846791 77846827 -204346837 + (A)n Simple_repeat Simple_repeat 1 36 0 44 46 0 0 chr1 77846984 77847049 -204346615 + AT_rich Low_complexity Low_complexity 1 65 0 300 272 35 0 chr1 77847112 77847226 -204346438 + L1ME4a LINE L1 3383 3500 -2629 338 264 34 22 chr1 77847265 77847443 -204346221 + L1ME4a LINE L1 4632 4811 -1318 273 29 0 0 chr1 77847443 77847477 -204346187 + (TC)n Simple_repeat Simple_repeat 1 34 0 327 191 0 0 chr1 77847478 77847546 -204346118 + (TA)n Simple_repeat Simple_repeat 2 69 0 308 294 31 17 chr1 77847589 77847821 -204345843 + L1ME4a LINE L1 4886 5123 -1006 459 171 48 19 chr1 77847889 77847994 -204345670 + MLT1A2 LTR MaLR 267 374 0 611 313 50 6 chr1 77848889 77849071 -204344593 - MER91A DNA MER1_type -2 194 5 425 289 16 0 chr1 77850177 77850298 -204343366 - L2 LINE L2 0 3313 3191 407 237 0 0 chr1 77850438 77850535 -204343129 + MER5A DNA MER1_type 13 109 -80 351 152 293 10 chr1 77851253 77851352 -204342312 - MIR SINE MIR -25 237 111 422 243 19 9 chr1 77852290 77852397 -204341267 + MIR SINE MIR 75 182 -80 628 236 174 20 chr1 77853250 77853445 -204340219 + MIR SINE MIR 35 259 -3 443 185 93 28 chr1 77853456 77853564 -204340100 + L2 LINE L2 3199 3313 0 231 255 0 0 chr1 77853850 77853897 -204339767 + CT-rich Low_complexity Low_complexity 2 48 0 271 309 24 0 chr1 77854103 77854187 -204339477 - MIR SINE MIR -82 126 41 220 294 34 50 chr1 77855307 77855376 -204338288 + L2 LINE L2 3195 3263 -50 2344 94 3 10 chr1 77855376 77855685 -204337979 + AluSg SINE Alu 1 307 -3 220 294 34 50 chr1 77855685 77855734 -204337930 + L2 LINE L2 3263 3311 -2 672 279 88 27 chr1 77855739 77856180 -204337484 + L1ME4a LINE L1 5599 6066 -38 524 224 24 16 chr1 77856433 77856558 -204337106 + LTR16C LTR ERVL 364 489 -2 212 235 244 25 chr1 77856933 77857052 -204336612 - MIR3 SINE MIR -14 194 50 318 231 44 44 chr1 77857281 77857372 -204336292 + MIR SINE MIR 36 126 -82 252 0 0 0 chr1 77857477 77857505 -204336159 + (TG)n Simple_repeat Simple_repeat 1 28 0 185 200 91 0 chr1 77857739 77857794 -204335870 + L3 LINE CR1 806 865 -712 274 299 76 6 chr1 77857955 77858112 -204335552 + L3 LINE CR1 1062 1229 -348 204 269 127 30 chr1 77860862 77860996 -204332668 + L2 LINE L2 2464 2610 -704 516 286 42 0 chr1 77863377 77863545 -204330119 - MIR SINE MIR 0 262 88 1491 197 16 26 chr1 77863688 77863993 -204329671 + AluJo SINE Alu 1 302 -10 739 271 51 0 chr1 77865490 77865704 -204327960 - MIR SINE MIR -21 241 17 1917 130 33 7 chr1 77865816 77866116 -204327548 + AluSx SINE Alu 1 308 -4 211 320 27 13 chr1 77867175 77867250 -204326414 - MIR SINE MIR -167 95 20 735 152 45 0 chr1 77867511 77867643 -204326021 + FLAM_C SINE Alu 6 143 0 1893 123 58 3 chr1 77867661 77867840 -204325824 - AluY SINE Alu -2 309 106 297 0 0 0 chr1 77867840 77867873 -204325791 + (TG)n Simple_repeat Simple_repeat 2 34 0 1893 123 58 3 chr1 77867873 77867986 -204325678 - AluY SINE Alu -205 106 1 181 262 24 0 chr1 77868008 77868050 -204325614 + MIR SINE MIR 202 244 -18 2042 143 50 37 chr1 77868440 77868818 -204324846 + MLT1B LTR MaLR 1 383 -7 204 40 0 0 chr1 77869821 77869846 -204323818 + (CAG)n Simple_repeat Simple_repeat 3 27 0 260 293 45 53 chr1 77871299 77871432 -204322232 - MER20 DNA MER1_type -24 195 64 1781 156 0 31 chr1 77871889 77872201 -204321463 - AluJo SINE Alu 0 305 3 183 263 18 0 chr1 77872247 77872304 -204321360 - MIR SINE MIR -124 138 81 311 318 33 20 chr1 77873237 77873388 -204320276 - MER103 DNA DNA -6 160 8 325 186 115 71 chr1 77873877 77873990 -204319674 + MIR3 SINE MIR 89 206 -2 190 146 73 0 chr1 77874894 77874935 -204318729 + MER5B DNA MER1_type 1 44 -134 228 159 23 0 chr1 77876472 77876516 -204317148 + L2 LINE L2 3264 3308 -5 557 280 108 9 chr1 77876793 77877025 -204316639 - MIR SINE MIR -4 258 4 934 204 307 3 chr1 77879566 77879954 -204313710 + Charlie4a DNA MER1_type 3 508 0 205 288 150 12 chr1 77880030 77880110 -204313554 + MIR3 SINE MIR 10 100 -108 2175 121 10 3 chr1 77880196 77880510 -204313154 + MER7A DNA MER2_type 10 323 -23 331 333 29 14 chr1 77880511 77880649 -204313015 - MIR SINE MIR -55 207 68 189 284 30 0 chr1 77880717 77880784 -204312880 + MIR SINE MIR 156 224 -38 348 202 229 0 chr1 77883008 77883117 -204310547 + MER5A DNA MER1_type 55 188 -1 253 327 39 10 chr1 77883157 77883261 -204310403 + MER5B DNA MER1_type 23 129 -49 1220 131 0 6 chr1 77883641 77883817 -204309847 - AluSp SINE Alu -19 294 120 307 345 68 20 chr1 77885480 77885628 -204308036 - L2 LINE L2 -7 3265 3111 625 258 26 21 chr1 77886647 77886837 -204306827 - MIR SINE MIR -71 191 1 258 324 58 14 chr1 77887697 77887836 -204305828 - L2 LINE L2 -13 3300 3156 223 303 35 62 chr1 77888037 77888182 -204305482 - L2 LINE L2 -458 2856 2716 * 2359 268 149 28 chr1 77888180 77889651 -204304013 - L2 LINE L2 -4 3309 1566 1719 174 21 3 chr1 77889747 77890035 -204303629 + AluJb SINE Alu 1 293 -19 402 200 141 59 chr1 77891216 77891386 -204302278 + L1ME4a LINE L1 5864 6047 -74 244 284 84 0 chr1 77891699 77891794 -204301870 - MIR SINE MIR -57 205 103 354 278 127 0 chr1 77893877 77894003 -204299661 + MIR3 SINE MIR 39 180 -28 580 282 23 0 chr1 77894855 77895029 -204298635 - MER5A DNA MER1_type 0 189 12 263 276 26 43 chr1 77895104 77895220 -204298444 - MER94 DNA DNA -19 115 2 1474 105 50 0 chr1 77895245 77895464 -204298200 + MER30 DNA MER1_type 1 230 0 330 270 54 9 chr1 77895464 77895575 -204298089 - MIR SINE MIR -73 189 74 304 311 98 12 chr1 77896213 77896515 -204297149 - L3 LINE CR1 -109 1468 1098 238 207 17 0 chr1 77900301 77900359 -204293305 + C-rich Low_complexity Low_complexity 3 61 0 245 253 74 53 chr1 77900519 77900614 -204293050 + MIR SINE MIR 156 252 -10 2304 102 3 0 chr1 77901003 77901296 -204292368 - AluSp SINE Alu -19 294 1 1897 298 31 48 chr1 77901972 77902677 -204290987 + MER115 DNA AcHobo 1 693 0 242 304 63 32 chr1 77902827 77902985 -204290679 - MIR SINE MIR -14 248 86 218 245 0 0 chr1 77903178 77903227 -204290437 - MIR SINE MIR -150 112 64 180 365 196 0 chr1 77905099 77905206 -204288458 + MIR SINE MIR 49 176 -86 705 251 100 26 chr1 77906667 77906898 -204286766 + MIR SINE MIR 15 262 0 2522 73 0 6 chr1 77906903 77907218 -204286446 - AluSp SINE Alu 0 313 1 226 368 132 9 chr1 77907570 77907684 -204285980 + L2 LINE L2 3143 3270 -2 7099 45 9 5 chr1 77907930 77909076 -204284588 + L1PA7 LINE L1 5003 6154 0 239 255 11 11 chr1 77909098 77909192 -204284472 + (TA)n Simple_repeat Simple_repeat 1 94 0 184 378 89 0 chr1 77909230 77909320 -204284344 - L2 LINE L2 -62 3210 3113 227 333 120 21 chr1 77909442 77909634 -204284030 - L2 LINE L2 -233 3039 2829 216 0 0 0 chr1 77910163 77910187 -204283477 + (TC)n Simple_repeat Simple_repeat 2 25 0 191 264 190 25 chr1 77912051 77912172 -204281492 - MIR3 SINE MIR -66 142 2 * 288 381 81 12 chr1 77912172 77912330 -204281334 + MIR3 SINE MIR 29 197 -11 1609 136 114 0 chr1 77914284 77914548 -204279116 - AluJb SINE Alu -18 294 1 629 211 34 118 chr1 77914561 77914798 -204278866 - MIR SINE MIR -16 246 30 241 257 186 0 chr1 77915088 77915158 -204278506 - L2 LINE L2 -23 3290 3208 2198 114 3 25 chr1 77915173 77915490 -204278174 + AluSg SINE Alu 1 310 0 294 274 60 0 chr1 77916041 77916125 -204277539 - L3 LINE CR1 -10 1567 1479 181 235 59 15 chr1 77916180 77916248 -204277416 + MIR SINE MIR 65 135 -127 277 356 10 0 chr1 77916920 77917021 -204276643 - L3 LINE CR1 -104 1473 1372 269 47 0 47 chr1 77917171 77917214 -204276450 + LTR14B LTR ERVK 6 46 -562 * 1920 121 100 27 chr1 77917202 77917573 -204276091 + LTR14B LTR ERVK 211 608 0 2129 102 39 0 chr1 77919663 77919946 -204273718 - AluSx SINE Alu -18 294 1 189 74 0 0 chr1 77921685 77921712 -204271952 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1604 166 96 14 chr1 77921803 77922147 -204271517 - MER21B LTR ERV1 -80 783 412 1970 173 9 0 chr1 77922155 77922490 -204271174 + MER1B DNA MER1_type 1 338 -1 1852 182 28 19 chr1 77922497 77922859 -204270805 - MER21B LTR ERV1 -460 403 39 21 0 0 0 chr1 77923543 77923564 -204270100 + AT_rich Low_complexity Low_complexity 1 21 0 2109 64 85 7 chr1 77923679 77923961 -204269703 + AluY SINE Alu 1 304 -7 2199 185 109 22 chr1 77925692 77926339 -204267325 + Tigger7 DNA MER2_type 5 2585 -2 618 259 54 54 chr1 77926484 77926501 -204267163 - MIR SINE MIR -21 241 225 2058 91 91 0 chr1 77926501 77926777 -204266887 + AluSx SINE Alu 1 301 -11 618 259 54 54 chr1 77926777 77926983 -204266681 - MIR SINE MIR -36 226 18 1345 197 115 75 chr1 77927072 77927525 -204266139 + MLT1F LTR MaLR 4 480 -62 2402 84 0 0 chr1 77927525 77927824 -204265840 + AluSp SINE Alu 1 299 -14 1345 197 115 75 chr1 77927824 77927873 -204265791 + MLT1F LTR MaLR 480 526 -16 201 237 0 0 chr1 77928426 77928464 -204265200 + (TGAG)n Simple_repeat Simple_repeat 3 40 0 1050 214 160 8 chr1 77929079 77929341 -204264323 + AluJb SINE Alu 1 302 0 892 126 6 126 chr1 77929359 77929542 -204264122 + FRAM SINE Alu 1 40 0 2308 99 0 34 chr1 77929555 77929879 -204263785 + AluSq SINE Alu 1 313 0 297 51 0 0 chr1 77930138 77930177 -204263487 + (A)n Simple_repeat Simple_repeat 1 39 0 596 216 184 14 chr1 77930364 77930582 -204263082 + MIR SINE MIR 8 262 0 306 301 85 80 chr1 77931296 77931472 -204262192 + MIR3 SINE MIR 18 194 -14 311 276 54 49 chr1 77931641 77931826 -204261838 - L1ME4a LINE L1 -4 6117 5932 704 270 33 88 chr1 77931927 77932201 -204261463 + MIR SINE MIR 3 261 -1 25 0 0 0 chr1 77932765 77932790 -204260874 + AT_rich Low_complexity Low_complexity 1 25 0 45 0 0 0 chr1 77932860 77932905 -204260759 + AT_rich Low_complexity Low_complexity 1 45 0 234 265 162 34 chr1 77935315 77935432 -204258232 - L2 LINE L2 -14 3299 3168 205 333 129 14 chr1 77935920 77936067 -204257597 - L2 LINE L2 -3 3269 3106 31 26 0 0 chr1 77937065 77937103 -204256561 + AT_rich Low_complexity Low_complexity 1 38 0 21 89 0 0 chr1 77939782 77939838 -204253826 + AT_rich Low_complexity Low_complexity 1 56 0 181 292 97 14 chr1 77939963 77940035 -204253629 - MIR SINE MIR -184 78 1 233 398 11 28 chr1 77940423 77940604 -204253060 + L3 LINE CR1 1297 1474 -103 2247 39 43 0 chr1 77941038 77941317 -204252347 - AluY SINE Alu -20 291 1 255 293 81 41 chr1 77942761 77942884 -204250780 - L2 LINE L2 -789 2525 2398 358 309 144 43 chr1 77942907 77943276 -204250388 + L3 LINE CR1 1169 1574 -3 259 308 178 14 chr1 77943378 77943524 -204250140 + MIR3 SINE MIR 33 202 -6 602 253 70 26 chr1 77944355 77944584 -204249080 + MIR SINE MIR 18 256 -6 887 190 22 91 chr1 77945707 77945939 -204247725 - MER20 DNA MER1_type -3 216 1 646 293 59 24 chr1 77946112 77946207 -204247457 - MIR SINE MIR 0 262 172 2316 90 0 7 chr1 77946207 77946507 -204247157 + AluSp SINE Alu 1 298 -15 646 293 59 24 chr1 77946507 77946664 -204247000 - MIR SINE MIR -90 172 1 455 305 82 73 chr1 77947001 77947355 -204246309 + L3 LINE CR1 1196 1552 -25 286 244 135 45 chr1 77948172 77948328 -204245336 - MIR SINE MIR -36 226 57 241 290 0 0 chr1 77949269 77949338 -204244326 + MIR SINE MIR 194 262 0 2469 91 0 0 chr1 77949879 77950187 -204243477 + AluSq SINE Alu 1 308 -5 252 0 0 0 chr1 77950893 77950921 -204242743 + (CA)n Simple_repeat Simple_repeat 2 29 0 1942 120 62 4 chr1 77951081 77951357 -204242307 - AluSx SINE Alu -18 294 3 459 300 80 45 chr1 77951397 77951911 -204241753 - MLT1K LTR MaLR 0 588 16 304 256 37 0 chr1 77952041 77952123 -204241541 + L1P2 LINE L1 5365 5449 -705 541 277 43 8 chr1 77952236 77952489 -204241175 + L1ME4a LINE L1 5589 5850 -271 182 271 0 71 chr1 77953004 77953089 -204240575 + MIR SINE MIR 119 197 -65 195 339 93 0 chr1 77956322 77956440 -204237224 - L2 LINE L2 0 3313 3185 22 80 0 0 chr1 77956440 77956490 -204237174 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr1 77956509 77956534 -204237130 + AT_rich Low_complexity Low_complexity 1 25 0 225 281 88 9 chr1 77957144 77957254 -204236410 - MIR SINE MIR -70 192 66 240 331 140 0 chr1 77959300 77959436 -204234228 + MIR3 SINE MIR 24 178 -30 252 0 0 0 chr1 77959613 77959641 -204234023 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 409 290 55 27 chr1 77961593 77961814 -204231850 + MIR SINE MIR 7 212 -50 24 77 0 0 chr1 77961925 77961977 -204231687 + AT_rich Low_complexity Low_complexity 1 52 0 494 295 138 14 chr1 77962961 77963171 -204230493 + MIR SINE MIR 17 252 -10 1890 79 56 79 chr1 77963828 77964133 -204229531 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 77965291 77965313 -204228351 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr1 77965586 77965613 -204228051 + (T)n Simple_repeat Simple_repeat 1 27 0 241 260 208 0 chr1 77965779 77965875 -204227789 - MIR3 SINE MIR -7 201 86 312 91 0 0 chr1 77967273 77967317 -204226347 + (TG)n Simple_repeat Simple_repeat 2 45 0 180 77 0 0 chr1 77968241 77968267 -204225397 + (CACCC)n Simple_repeat Simple_repeat 4 29 0 363 141 0 0 chr1 77969276 77969340 -204224324 + (TCCC)n Simple_repeat Simple_repeat 3 66 0 502 328 26 46 chr1 77969968 77970163 -204223501 + L2 LINE L2 3082 3272 0 1956 176 18 3 chr1 77970759 77971099 -204222565 + MER7A DNA MER2_type 4 346 0 181 213 93 130 chr1 77971115 77971223 -204222441 - L2 LINE L2 0 3313 3210 335 83 233 0 chr1 77971338 77971398 -204222266 - MER39 LTR ERV1 -628 79 6 283 210 145 63 chr1 77971409 77971645 -204222019 + MER34 LTR ERV1 438 527 -15 2122 117 3 0 chr1 77971654 77971964 -204221700 - AluSx SINE Alu 0 311 1 201 235 25 0 chr1 77972111 77972161 -204221503 + MIR SINE MIR 93 145 -63 248 196 71 0 chr1 77972586 77972642 -204221022 + MIR SINE MIR 122 181 -81 2242 78 42 0 chr1 77973091 77973374 -204220290 + AluSp SINE Alu 2 296 -17 273 151 0 0 chr1 77973420 77973473 -204220191 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 185 346 47 19 chr1 77973601 77973708 -204219956 + L2 LINE L2 3139 3248 -24 354 80 0 0 chr1 77974012 77974062 -204219602 + (CA)n Simple_repeat Simple_repeat 1 50 0 370 260 208 23 chr1 77974351 77974524 -204219140 + MIR SINE MIR 57 261 -1 216 0 0 0 chr1 77974552 77974576 -204219088 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2521 41 0 0 chr1 77975109 77975400 -204218264 + AluY SINE Alu 3 293 -18 657 270 32 5 chr1 77975834 77976023 -204217641 - MIR SINE MIR -10 252 59 2544 54 0 0 chr1 77976023 77976321 -204217343 - AluY SINE Alu -11 300 3 1599 174 148 6 chr1 77976783 77977122 -204216542 + MSTB1 LTR MaLR 1 387 -45 6237 80 21 11 chr1 77977122 77977403 -204216261 + L1PA13 LINE L1 5199 5476 -687 2205 105 3 3 chr1 77977403 77977707 -204215957 + AluSg SINE Alu 3 306 -4 6237 80 21 11 chr1 77977707 77978381 -204215283 + L1PA13 LINE L1 5476 6163 0 346 307 47 16 chr1 77978508 77978635 -204215029 - L2 LINE L2 -1 3312 3182 2341 104 3 0 chr1 77978699 77979007 -204214657 + AluSp SINE Alu 2 310 -3 288 0 0 0 chr1 77979085 77979117 -204214547 + (TG)n Simple_repeat Simple_repeat 2 33 0 2199 185 109 22 chr1 77979622 77980269 -204213395 + Tigger7 DNA MER2_type 5 2585 -2 1978 91 94 0 chr1 77980431 77980696 -204212968 + AluSx SINE Alu 1 290 -22 810 265 13 58 chr1 77981239 77981552 -204212112 - LTR2 LTR ERV1 -150 299 1 302 203 0 25 chr1 77981624 77981703 -204211961 - MER46C DNA MER2_type -146 192 116 25 0 0 0 chr1 77982729 77982754 -204210910 + AT_rich Low_complexity Low_complexity 1 25 0 1938 194 0 44 chr1 77983070 77983478 -204210186 - MLT1B LTR MaLR 0 390 1 374 290 77 43 chr1 77983493 77983700 -204209964 - L1MC/D LINE L1 -2095 5713 5500 279 201 148 48 chr1 77983784 77983871 -204209793 - L1MC/D LINE L1 -747 5399 5322 1689 188 3 23 chr1 77983871 77984180 -204209484 - AluJo SINE Alu -9 303 1 279 201 148 48 chr1 77984180 77984281 -204209383 - L1MC/D LINE L1 -824 5322 5192 29 47 0 0 chr1 77984545 77984588 -204209076 + AT_rich Low_complexity Low_complexity 1 43 0 2091 66 23 30 chr1 77985003 77985304 -204208360 + L1PA7 LINE L1 5855 6153 -1 734 36 54 0 chr1 77985395 77985507 -204208157 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 2305 112 0 3 chr1 77985690 77985995 -204207669 - AluSx SINE Alu -8 304 1 580 247 76 14 chr1 77986184 77986459 -204207205 + L1ME3 LINE L1 4104 4395 -1751 952 197 0 63 chr1 77986588 77986811 -204206853 + AluJo SINE Alu 92 300 -12 1385 234 65 37 chr1 77986908 77987599 -204206065 + L1ME3 LINE L1 5166 5904 -260 296 192 0 125 chr1 77987809 77987913 -204205751 + MLT1H LTR MaLR 459 549 0 * 371 267 0 0 chr1 77987913 77987998 -204205666 + MER46C DNA MER2_type 186 270 -68 5142 153 20 26 chr1 77988022 77989753 -204203911 - L1MA4 LINE L1 -6 6294 4555 2296 74 0 3 chr1 77989753 77990067 -204203597 - AluSx SINE Alu 0 315 3 289 98 0 0 chr1 77990071 77990112 -204203552 + MSTA LTR MaLR 388 428 0 325 188 0 0 chr1 77990133 77990202 -204203462 + L1ME3 LINE L1 6080 6148 -14 193 57 57 0 chr1 77991073 77991108 -204202556 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 56 0 0 chr1 77991386 77991422 -204202242 + AT_rich Low_complexity Low_complexity 1 36 0 439 313 35 0 chr1 77991446 77991590 -204202074 - MIR SINE MIR -111 151 3 302 258 211 8 chr1 77991600 77991728 -204201936 + L2 LINE L2 3160 3313 0 377 281 8 25 chr1 77991957 77992078 -204201586 + MIR SINE MIR 144 262 0 743 287 5 27 chr1 77992091 77992314 -204201350 + MIR SINE MIR 1 218 -44 191 225 113 62 chr1 77992279 77992359 -204201305 - MIR SINE MIR -44 218 135 * 308 324 194 42 chr1 77993187 77993662 -204200002 - L2 LINE L2 -972 2342 1765 2270 78 3 3 chr1 77993662 77993978 -204199686 - AluSq SINE Alu 0 316 1 308 324 194 42 chr1 77993978 77994069 -204199595 - L2 LINE L2 -1549 1765 1689 791 201 20 55 chr1 77994272 77994471 -204199193 - MIR SINE MIR -69 193 2 610 278 44 30 chr1 77995196 77995235 -204198429 - MIR SINE MIR -15 247 210 2150 118 7 0 chr1 77995235 77995246 -204198418 - AluSx SINE Alu -14 298 289 586 25 12 12 chr1 77995246 77995327 -204198337 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2150 118 7 0 chr1 77995327 77995611 -204198053 - AluSx SINE Alu -23 289 1 610 278 44 30 chr1 77995611 77995809 -204197855 - MIR SINE MIR -52 210 7 188 235 0 0 chr1 77995820 77995854 -204197810 + L2 LINE L2 3261 3294 -19 270 80 0 13 chr1 77995949 77996000 -204197664 + L1PA8 LINE L1 6107 6164 0 698 215 241 5 chr1 77996099 77996294 -204197370 - MIR SINE MIR -16 246 6 2201 131 0 0 chr1 77997748 77998054 -204195610 + AluSx SINE Alu 1 306 -6 1666 185 0 47 chr1 77998174 77998493 -204195171 - AluJo SINE Alu -8 304 1 384 267 43 41 chr1 77999427 77999615 -204194049 + MLT1J LTR MaLR 11 159 -291 583 256 160 6 chr1 77999745 77999901 -204193763 + MER5A DNA MER1_type 9 188 -1 358 288 26 41 chr1 77999901 78000064 -204193600 + MLT1J LTR MaLR 256 476 -35 447 264 6 138 chr1 78000620 78000714 -204192950 - L2 LINE L2 -11 3261 3197 2008 123 6 31 chr1 78000714 78001032 -204192632 + AluSx SINE Alu 1 310 -2 447 264 6 138 chr1 78001032 78001104 -204192560 - L2 LINE L2 -75 3197 3117 2883 145 26 26 chr1 78001397 78001943 -204191721 + Tigger3b DNA MER2_type 1 546 -685 2372 63 0 0 chr1 78002062 78002347 -204191317 - AluY SINE Alu -24 287 3 2044 130 6 3 chr1 78002708 78003039 -204190625 - MER47A DNA MER2_type -34 332 1 2230 103 3 3 chr1 78003220 78003522 -204190142 + AluSq SINE Alu 1 302 -11 2295 107 0 0 chr1 78003525 78003824 -204189840 + AluSx SINE Alu 4 302 -10 1081 86 0 7 chr1 78003832 78003971 -204189693 + AluY SINE Alu 5 142 -169 2682 149 30 16 chr1 78004238 78004736 -204188928 + Tigger3b DNA MER2_type 728 1232 0 468 241 155 4 chr1 78005274 78005500 -204188164 - MLT1G1 LTR MaLR -8 587 287 285 354 0 0 chr1 78005826 78005908 -204187756 - MIR SINE MIR -87 121 40 2246 106 0 3 chr1 78006031 78006324 -204187340 - AluSg SINE Alu -17 293 2 4799 133 15 34 chr1 78006326 78007177 -204186487 - L1MA8 LINE L1 -176 6115 5281 485 289 40 7 chr1 78007278 78007427 -204186237 - L2 LINE L2 -5 3308 3155 2230 70 0 7 chr1 78007522 78007841 -204185823 - AluY SINE Alu 0 317 1 352 325 25 13 chr1 78008015 78008172 -204185492 - Tigger8 DNA MER2_type -133 533 375 356 248 121 81 chr1 78008230 78008428 -204185236 - Tigger8 DNA MER2_type -413 253 48 2347 110 0 0 chr1 78008457 78008765 -204184899 + AluSg SINE Alu 1 308 -2 198 257 239 35 chr1 78009350 78009463 -204184201 + MIR SINE MIR 33 168 -94 840 176 59 80 chr1 78010060 78010298 -204183366 + MER106A DNA MER1_type 1 233 -3 459 316 30 6 chr1 78010413 78010581 -204183083 + MIR SINE MIR 11 182 -80 1967 137 16 19 chr1 78010727 78011040 -204182624 + AluSx SINE Alu 1 312 0 680 187 44 88 chr1 78011084 78011266 -204182398 + AluJo SINE Alu 124 297 -15 288 0 0 0 chr1 78011405 78011437 -204182227 + (CA)n Simple_repeat Simple_repeat 2 33 0 752 235 0 0 chr1 78011856 78011988 -204181676 + FLAM_A SINE Alu 1 132 -1 204 97 0 0 chr1 78062160 78062191 -204131473 + (C)n Simple_repeat Simple_repeat 1 31 0 879 89 0 0 chr1 78062245 78062368 -204131296 - L1P5 LINE L1 -338 5813 5691 340 317 20 0 chr1 78062368 78062469 -204131195 - MIR SINE MIR -140 122 20 696 320 153 13 chr1 78062541 78063135 -204130529 + L2 LINE L2 2632 3313 0 215 380 74 8 chr1 78063273 78063394 -204130270 - L2 LINE L2 -226 3046 2918 2351 118 6 8 chr1 78063721 78064077 -204129587 - THE1A LTR MaLR 0 355 1 11294 93 30 0 chr1 78064079 78065611 -204128053 - THE1A-int LTR MaLR -2 1578 1 2303 127 8 8 chr1 78065611 78065966 -204127698 - THE1A LTR MaLR 0 355 1 2326 89 7 0 chr1 78066134 78066425 -204127239 - AluSc SINE Alu -16 293 1 207 268 18 0 chr1 78066437 78066493 -204127171 + L2 LINE L2 3159 3215 -98 833 337 45 52 chr1 78066702 78067279 -204126385 - L2 LINE L2 -5 3267 2688 203 61 30 0 chr1 78067517 78067550 -204126114 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 257 322 11 11 chr1 78068429 78068516 -204125148 + MIR SINE MIR 18 104 -158 232 319 0 0 chr1 78068553 78068622 -204125042 + MIR SINE MIR 46 114 -148 209 220 0 20 chr1 78068663 78068713 -204124951 + (CTA)n Simple_repeat Simple_repeat 1 49 0 2515 62 0 3 chr1 78068892 78069200 -204124464 - AluY SINE Alu -4 307 1 934 214 74 107 chr1 78069805 78070102 -204123562 - MLT1C LTR MaLR -6 461 181 3189 127 8 15 chr1 78070102 78070636 -204123028 - L1PA14 LINE L1 -3 6158 5629 934 214 74 107 chr1 78070636 78070768 -204122896 - MLT1C LTR MaLR -286 181 46 428 277 123 0 chr1 78071901 78072031 -204121633 + L2 LINE L2 3127 3272 0 225 284 75 0 chr1 78073643 78073710 -204119954 + L2 LINE L2 3241 3312 -1 1963 220 90 30 chr1 78074230 78074807 -204118857 + MLT1E2 LTR MaLR 15 626 0 2295 254 7 2 chr1 78074807 78075410 -204118254 + MLT1E2-int LTR MaLR 1 606 -765 246 282 26 26 chr1 78075614 78075692 -204117972 + MLT1E2-int LTR MaLR 692 769 -602 1520 215 75 25 chr1 78075729 78076167 -204117497 + MLT1C LTR MaLR 6 465 -2 231 296 12 0 chr1 78076172 78076253 -204117411 + MLT1E2-int LTR MaLR 801 882 -489 247 246 168 113 chr1 78076344 78076547 -204117117 + MLT1E2-int LTR MaLR 879 1092 -279 23 0 0 0 chr1 78076553 78076576 -204117088 + AT_rich Low_complexity Low_complexity 1 23 0 1711 156 0 70 chr1 78077318 78077430 -204116234 + AluJb SINE Alu 1 119 -193 1751 158 58 17 chr1 78077430 78077790 -204115874 - THE1C LTR MaLR 0 375 1 1711 156 0 70 chr1 78077790 78077829 -204115835 + AluJb SINE Alu 119 159 -153 2255 119 0 10 chr1 78077829 78078131 -204115533 + AluSx SINE Alu 1 299 -13 1711 156 0 70 chr1 78078131 78078306 -204115358 + AluJb SINE Alu 159 305 -7 21 0 0 0 chr1 78078521 78078542 -204115122 + AT_rich Low_complexity Low_complexity 1 21 0 407 157 0 142 chr1 78078876 78079010 -204114654 + MLT1E2-int LTR MaLR 1086 1200 -171 1829 218 68 37 chr1 78079205 78079750 -204113914 + MLT1E2 LTR MaLR 60 621 -5 204 270 0 48 chr1 78080057 78080120 -204113544 - L2 LINE L2 -9 3304 3245 342 214 0 94 chr1 78080689 78080806 -204112858 + MIR SINE MIR 157 262 0 188 320 81 60 chr1 78080898 78081182 -204112482 - L2 LINE L2 -2343 971 682 2915 137 8 12 chr1 78082146 78082659 -204111005 + MER41B LTR ERV1 125 635 0 2635 92 58 25 chr1 78083038 78083472 -204110192 + LTR7 LTR ERV1 1 448 -2 3012 142 9 19 chr1 78083474 78084046 -204109618 + HERVH LTR ERV1 1 566 -7147 1845 129 28 78 chr1 78084342 78084806 -204108858 + HERVH LTR ERV1 251 691 -7022 * 15526 90 21 23 chr1 78084802 78087343 -204106321 + HERVH LTR ERV1 460 2995 -4718 884 133 7 0 chr1 78087322 78087472 -204106192 + HERVH LTR ERV1 3140 3290 -4423 * 3100 118 6 4 chr1 78087462 78087963 -204105701 + HERVH LTR ERV1 3492 3993 -3720 3870 136 9 11 chr1 78087965 78088628 -204105036 + HERVH LTR ERV1 4488 5149 -2564 696 263 131 8 chr1 78088753 78088989 -204104675 - LTR16A LTR ERVL -170 280 16 25 0 0 0 chr1 78089161 78089186 -204104478 + AT_rich Low_complexity Low_complexity 1 25 0 475 287 137 26 chr1 78089836 78090678 -204102986 - L1M4 LINE L1 -1594 4552 3618 616 296 12 40 chr1 78091356 78091609 -204102055 + LTR40a LTR ERVL 159 404 -115 200 208 9 75 chr1 78092545 78092651 -204101013 + T-rich Low_complexity Low_complexity 2 100 0 24 32 0 0 chr1 78093337 78093368 -204100296 + AT_rich Low_complexity Low_complexity 1 31 0 663 205 0 24 chr1 78093368 78093495 -204100169 - FLAM_C SINE Alu -8 125 2 8814 215 19 26 chr1 78093664 78095024 -204098640 + L1PB4 LINE L1 2985 4352 -1804 2070 132 7 0 chr1 78095024 78095311 -204098353 + AluSx SINE Alu 6 294 -18 8814 215 19 26 chr1 78095311 78097149 -204096515 + L1PB4 LINE L1 4352 6152 -4 872 232 107 12 chr1 78097159 78097504 -204096160 + L1MEc LINE L1 1930 2307 -4089 1710 221 41 48 chr1 78097709 78098192 -204095472 - MLT1D LTR MaLR 0 505 26 1368 230 127 82 chr1 78098433 78098968 -204094696 + MLT1F LTR MaLR 9 542 0 3924 81 34 11 chr1 78100375 78100940 -204092724 - L1PA11 LINE L1 -1 6173 5596 2204 146 28 6 chr1 78100940 78101296 -204092368 - THE1B LTR MaLR 0 364 1 9973 101 28 41 chr1 78101296 78101611 -204092053 - THE1B-int LTR MaLR 0 1580 1262 7007 58 7 4 chr1 78101611 78102641 -204091023 - L1PA6 LINE L1 0 6154 5123 9973 101 28 41 chr1 78102641 78103926 -204089738 - THE1B-int LTR MaLR -318 1262 1 2046 177 22 0 chr1 78103926 78104282 -204089382 - THE1B LTR MaLR 0 364 1 17280 209 23 22 chr1 78104282 78110418 -204083246 - L1P4 LINE L1 -574 7038 7 21 57 0 0 chr1 78110425 78110460 -204083204 + AT_rich Low_complexity Low_complexity 1 35 0 586 129 0 0 chr1 78110770 78110855 -204082809 + MSTB LTR MaLR 1 85 -343 1301 176 34 26 chr1 78110863 78111096 -204082568 + MSTB LTR MaLR 192 426 0 1564 222 0 14 chr1 78111155 78111452 -204082212 - AluJb SINE Alu -19 293 1 1226 169 0 0 chr1 78111453 78111654 -204082010 + MER3 DNA MER1_type 9 209 0 192 250 132 13 chr1 78112915 78112991 -204080673 + MIR SINE MIR 107 191 -71 2251 19 4 0 chr1 78113001 78113262 -204080402 + L1PA5 LINE L1 5882 6143 -11 21 0 0 0 chr1 78113262 78113283 -204080381 + AT_rich Low_complexity Low_complexity 1 21 0 877 217 43 0 chr1 78113372 78113579 -204080085 - L1ME2 LINE L1 -244 5920 5705 216 224 0 26 chr1 78113579 78113655 -204080009 + A-rich Low_complexity Low_complexity 1 74 0 262 277 62 0 chr1 78113889 78113954 -204079710 + MER58C DNA MER1_type 7 75 -140 328 158 69 89 chr1 78114030 78114131 -204079533 + MER58C DNA MER1_type 117 215 0 532 173 36 0 chr1 78115260 78115370 -204078294 - MER5A DNA MER1_type -74 115 2 630 169 52 74 chr1 78116144 78116375 -204077289 - MER69 DNA AcHobo 0 2526 2301 293 235 0 0 chr1 78116383 78116451 -204077213 - MER69 DNA AcHobo -421 2105 2038 * 1463 284 40 11 chr1 78116448 78116902 -204076762 - MER69 DNA AcHobo -586 640 174 1715 156 3 48 chr1 78116948 78117263 -204076401 + AluJo SINE Alu 2 302 -10 186 133 0 0 chr1 78117264 78117294 -204076370 + (TA)n Simple_repeat Simple_repeat 2 31 0 343 276 61 0 chr1 78117294 78117392 -204076272 - L1MC4 LINE L1 -1339 6703 6600 210 174 0 0 chr1 78117415 78117461 -204076203 + (TA)n Simple_repeat Simple_repeat 1 46 0 432 239 106 0 chr1 78117463 78117576 -204076088 - MER69 DNA AcHobo -2401 125 1 226 342 111 8 chr1 78117632 78117749 -204075915 + MIR SINE MIR 17 145 -63 257 236 0 0 chr1 78117822 78117877 -204075787 + MLT1A1 LTR MaLR 12 66 -299 1477 90 0 38 chr1 78117877 78118089 -204075575 + AluSg/x SINE Alu 104 307 -5 902 151 72 12 chr1 78118089 78118255 -204075409 + MLT1A1 LTR MaLR 190 365 0 349 299 24 24 chr1 78119431 78119558 -204074106 - L2 LINE L2 -1 3312 3186 231 203 0 0 chr1 78119792 78119851 -204073813 + A-rich Low_complexity Low_complexity 1 59 0 395 285 11 73 chr1 78120924 78121103 -204072561 - MIR SINE MIR 0 262 95 9167 210 14 7 chr1 78121274 78124146 -204069518 - L1PA15 LINE L1 -2 6814 3914 5206 241 52 20 chr1 78124152 78124300 -204069364 - L1PA15 LINE L1 -3003 3794 3652 1910 157 37 0 chr1 78124300 78124599 -204069065 - AluSx SINE Alu -2 310 1 5206 241 52 20 chr1 78124599 78126831 -204066833 - L1PA15 LINE L1 -3145 3652 1296 36 23 0 0 chr1 78127627 78127670 -204065994 + AT_rich Low_complexity Low_complexity 1 43 0 211 331 15 59 chr1 78127830 78127966 -204065698 + MIR SINE MIR 19 148 -114 607 279 173 10 chr1 78128041 78128249 -204065415 + MIR SINE MIR 6 247 -15 468 263 74 29 chr1 78128220 78128250 -204065414 - MIR SINE MIR -33 229 202 * 198 0 0 0 chr1 78128250 78128272 -204065392 + (ATG)n Simple_repeat Simple_repeat 2 23 0 468 263 74 29 chr1 78128272 78128416 -204065248 - MIR SINE MIR -60 202 47 1792 250 69 25 chr1 78128838 78129406 -204064258 + MLT1E LTR MaLR 1 593 0 214 374 0 0 chr1 78129517 78129600 -204064064 + L2 LINE L2 3104 3186 -86 2074 131 0 13 chr1 78130173 78130478 -204063186 + AluSx SINE Alu 1 301 -11 238 325 44 61 chr1 78130866 78130980 -204062684 + MIR SINE MIR 21 133 -75 309 352 88 0 chr1 78134779 78134904 -204058760 + L2 LINE L2 3136 3271 -1 26 0 0 0 chr1 78135564 78135590 -204058074 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr1 78135655 78135682 -204057982 + AT_rich Low_complexity Low_complexity 1 27 0 1729 123 60 76 chr1 78136606 78136987 -204056677 + THE1C LTR MaLR 1 375 0 326 200 43 0 chr1 78137155 78137225 -204056439 + Tigger2 DNA MER2_type 1 73 -2645 819 257 17 11 chr1 78137258 78137433 -204056231 - MER8 DNA MER2_type -62 177 2 619 196 49 0 chr1 78137433 78137576 -204056088 + L1MDa LINE L1 1285 1434 -5106 1916 197 55 5 chr1 78137579 78137960 -204055704 + Tigger7 DNA MER2_type 6 405 -2082 2224 173 16 0 chr1 78137964 78138352 -204055312 - MER57A LTR ERV1 -9 394 1 642 134 25 8 chr1 78138352 78138470 -204055194 + Tigger7 DNA MER2_type 402 521 -212 497 202 11 0 chr1 78138470 78138559 -204055105 + Tigger7 DNA MER2_type 2399 2488 -3 2016 229 64 33 chr1 78138568 78139305 -204054359 + L1MDa LINE L1 1438 2208 -4332 232 288 116 41 chr1 78139628 78139774 -204053890 + L2 LINE L2 2917 3073 -199 238 242 83 42 chr1 78140031 78140151 -204053513 - L2 LINE L2 -91 3222 3098 278 311 136 0 chr1 78140334 78140437 -204053227 + L2 LINE L2 3178 3294 -19 617 281 65 4 chr1 78140830 78141000 -204052664 - MIR3 SINE MIR -10 198 22 1711 162 6 56 chr1 78143447 78143768 -204049896 - AluJb SINE Alu -7 305 1 4909 134 66 88 chr1 78144613 78145287 -204048377 + MER4C-int LTR ERV1 2740 3373 -3225 1598 176 7 29 chr1 78145287 78145594 -204048070 + AluJb SINE Alu 1 300 -12 4909 134 66 88 chr1 78145594 78146222 -204047442 + MER4C-int LTR ERV1 3373 4013 -2585 1054 140 0 0 chr1 78146245 78146402 -204047262 - Tigger1 DNA MER2_type -182 2236 2080 1549 133 24 0 chr1 78146402 78146657 -204047007 - L1PA13 LINE L1 -1 6162 5902 11342 138 54 44 chr1 78146657 78148953 -204044711 + MER4C-int LTR ERV1 4000 6320 -278 198 191 0 0 chr1 78148953 78148995 -204044669 + (TA)n Simple_repeat Simple_repeat 1 42 0 1460 140 29 55 chr1 78148996 78149303 -204044361 + MER4C-int LTR ERV1 6298 6596 -2 2545 101 94 30 chr1 78149314 78149455 -204044209 + MER4C LTR ERV1 4 134 -331 2347 87 3 0 chr1 78149455 78149755 -204043909 + AluSq SINE Alu 1 301 -12 2545 101 94 30 chr1 78149755 78150047 -204043617 + MER4C LTR ERV1 134 465 0 2436 166 7 14 chr1 78150363 78150792 -204042872 - MSTB LTR MaLR 0 426 1 268 248 184 37 chr1 78151174 78151283 -204042381 - MLT1K LTR MaLR -252 336 212 2093 119 3 23 chr1 78151392 78151695 -204041969 + AluSx SINE Alu 1 297 -15 452 269 87 74 chr1 78152111 78152334 -204041330 + HAL1 LINE L1 1010 1239 -1268 2843 9 0 6 chr1 78152334 78152649 -204041015 + AluYb8 SINE Alu 1 313 -5 452 269 87 74 chr1 78152649 78152723 -204040941 + HAL1 LINE L1 1239 1311 -1196 504 209 96 0 chr1 78152903 78153018 -204040646 - L2 LINE L2 0 3313 3188 13742 162 42 11 chr1 78153145 78158449 -204035215 - L1PB1 LINE L1 0 6867 1394 939 205 5 0 chr1 78158452 78158647 -204035017 - L1PB1 LINE L1 -6666 197 2 393 195 130 0 chr1 78158666 78158743 -204034921 - THE1B LTR MaLR -83 281 195 289 245 20 51 chr1 78158824 78158922 -204034742 - MLT1J LTR MaLR -69 442 348 237 159 0 0 chr1 78158958 78159002 -204034662 + (CA)n Simple_repeat Simple_repeat 2 45 0 222 305 98 0 chr1 78159005 78159087 -204034577 + MER5A DNA MER1_type 99 188 -1 186 71 0 0 chr1 78160552 78160580 -204033084 + (CAGCC)n Simple_repeat Simple_repeat 4 31 0 249 287 64 11 chr1 78161476 78161570 -204032094 + MIR SINE MIR 75 173 -89 346 256 58 36 chr1 78161622 78161759 -204031905 - MIR SINE MIR -72 190 51 558 230 62 57 chr1 78161946 78162155 -204031509 - MIR SINE MIR -51 211 2 201 299 30 0 chr1 78162173 78162240 -204031424 + L2 LINE L2 3155 3223 -49 611 239 62 17 chr1 78162257 78162433 -204031231 + MIR SINE MIR 27 210 -52 2366 85 3 0 chr1 78162651 78162946 -204030718 - AluSp SINE Alu -17 296 1 1734 134 75 8 chr1 78163809 78164077 -204029587 + AluSx SINE Alu 3 288 -24 340 346 46 0 chr1 78164117 78164247 -204029417 - MIR SINE MIR -10 252 117 1523 127 0 0 chr1 78165169 78165382 -204028282 - AluJb SINE Alu -99 213 1 526 242 73 23 chr1 78165393 78165653 -204028011 + L1M4 LINE L1 4384 4656 -1490 1531 167 78 25 chr1 78165750 78166031 -204027633 + AluJb SINE Alu 1 296 -16 3596 151 43 4 chr1 78166230 78167114 -204026550 - L1PA13 LINE L1 -607 5554 4649 3641 121 40 0 chr1 78167115 78167687 -204025977 + L1PA13 LINE L1 5566 6160 -3 286 333 76 0 chr1 78169711 78169816 -204023848 - L2 LINE L2 -5 3308 3196 234 241 19 0 chr1 78171083 78171137 -204022527 + (TA)n Simple_repeat Simple_repeat 2 56 0 369 0 0 0 chr1 78171281 78171322 -204022342 + (TG)n Simple_repeat Simple_repeat 2 42 0 2197 123 120 26 chr1 78171696 78172087 -204021577 - MSTA LTR MaLR 0 428 1 24 32 0 0 chr1 78172862 78172893 -204020771 + AT_rich Low_complexity Low_complexity 1 31 0 243 0 0 0 chr1 78173008 78173035 -204020629 + (TG)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr1 78173236 78173262 -204020402 + AT_rich Low_complexity Low_complexity 1 26 0 302 239 114 11 chr1 78173506 78173594 -204020070 + MIR SINE MIR 49 145 -63 25 65 0 0 chr1 78174030 78174076 -204019588 + AT_rich Low_complexity Low_complexity 1 46 0 1336 301 71 29 chr1 78174391 78174970 -204018694 - MER21B LTR ERV1 -260 603 1 434 263 70 49 chr1 78177540 78177783 -204015881 - L2 LINE L2 -938 2376 2129 279 0 0 0 chr1 78177915 78177946 -204015718 + (TG)n Simple_repeat Simple_repeat 1 31 0 1694 185 3 13 chr1 78178376 78178678 -204014986 - AluJo SINE Alu -13 299 1 318 258 102 42 chr1 78179093 78179260 -204014404 - MLT1K LTR MaLR -22 566 390 286 326 20 10 chr1 78179970 78180068 -204013596 - MIR SINE MIR -115 147 49 340 323 31 8 chr1 78181952 78182079 -204011585 - L2 LINE L2 -4 3309 3180 577 238 47 17 chr1 78182185 78182357 -204011307 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chr1 78182714 78182735 -204010929 + AT_rich Low_complexity Low_complexity 1 21 0 882 245 80 4 chr1 78182976 78183213 -204010451 + MIR SINE MIR 6 260 -2 310 266 248 31 chr1 78183405 78183631 -204010033 - L2 LINE L2 -1726 1588 1314 297 227 133 31 chr1 78183821 78183949 -204009715 + MIR SINE MIR 66 206 -56 638 249 24 12 chr1 78184612 78184781 -204008883 + L1MEc LINE L1 71 241 -6155 2160 263 66 44 chr1 78184859 78186027 -204007637 + L1MEc LINE L1 369 1562 -4834 1117 285 150 30 chr1 78186091 78186498 -204007166 - LTR16A LTR ERVL 0 457 2 216 0 0 0 chr1 78186521 78186545 -204007119 + (A)n Simple_repeat Simple_repeat 1 24 0 33 43 0 0 chr1 78186605 78186652 -204007012 + AT_rich Low_complexity Low_complexity 1 47 0 2371 77 7 0 chr1 78186847 78187147 -204006517 + AluSp SINE Alu 1 302 -11 469 300 81 31 chr1 78187890 78188113 -204005551 + MIR SINE MIR 22 255 -7 1828 161 20 3 chr1 78188531 78188836 -204004828 + AluJb SINE Alu 1 310 -2 362 340 64 74 chr1 78189453 78189699 -204003965 + L2 LINE L2 2978 3222 -50 3299 121 79 7 chr1 78189699 78190254 -204003410 + LTR49 LTR ERV1 1 595 0 362 340 64 74 chr1 78190254 78190304 -204003360 + L2 LINE L2 3222 3271 -1 2996 217 36 9 chr1 78190439 78191075 -204002589 - MER82 DNA MER2_type 0 653 1 250 240 83 0 chr1 78191098 78191194 -204002470 + L1ME4a LINE L1 6017 6120 -1 518 314 80 13 chr1 78191233 78191450 -204002214 + MIR SINE MIR 14 248 -14 1516 189 46 25 chr1 78191628 78191913 -204001751 - AluJo SINE Alu -21 291 1 429 267 97 36 chr1 78193350 78193515 -204000149 - L2 LINE L2 -5 3308 3134 1990 157 0 0 chr1 78193848 78194160 -203999504 + AluSx SINE Alu 1 312 0 1610 230 54 40 chr1 78194194 78194767 -203998897 + MLT1D LTR MaLR 3 626 0 468 269 39 0 chr1 78194768 78194872 -203998792 + L2 LINE L2 3204 3311 -2 419 301 8 8 chr1 78195439 78195562 -203998102 + MIR3 SINE MIR 82 204 -4 1495 246 37 12 chr1 78195655 78196129 -203997535 - MLT1H LTR MaLR 0 549 1 632 231 62 6 chr1 78196203 78196363 -203997301 - MIR SINE MIR 0 262 94 197 108 27 0 chr1 78196587 78196624 -203997040 + (CAA)n Simple_repeat Simple_repeat 2 39 0 254 329 0 0 chr1 78197603 78197673 -203995991 + MIR3 SINE MIR 108 177 -31 1293 232 7 21 chr1 78198006 78198290 -203995374 + AluJo SINE Alu 1 280 -32 439 151 21 11 chr1 78198291 78198384 -203995280 + GA-rich Low_complexity Low_complexity 2 95 0 314 379 17 0 chr1 78200205 78200321 -203993343 - L2 LINE L2 -18 3254 3137 503 329 109 21 chr1 78200750 78201033 -203992631 + L1MEc LINE L1 37 344 -6052 296 356 78 29 chr1 78202478 78202784 -203990880 - L2 LINE L2 -337 2977 2657 1020 272 34 31 chr1 78203225 78203519 -203990145 + MLT1H LTR MaLR 15 309 -240 755 299 67 29 chr1 78203694 78204038 -203989626 + L2 LINE L2 2460 2816 -498 315 0 0 0 chr1 78205469 78205504 -203988160 + (CA)n Simple_repeat Simple_repeat 1 35 0 385 348 65 57 chr1 78205534 78205878 -203987786 + L2 LINE L2 2440 2847 -425 2500 78 0 0 chr1 78205878 78206185 -203987479 - AluY SINE Alu -4 307 1 385 348 65 57 chr1 78206185 78206402 -203987262 + L2 LINE L2 2847 3061 -211 588 303 124 4 chr1 78206963 78207197 -203986467 - LTR67 LTR ERVL -10 547 286 603 330 35 4 chr1 78208543 78208770 -203984894 + MIR SINE MIR 28 261 -1 197 217 0 14 chr1 78209291 78209360 -203984304 + C-rich Low_complexity Low_complexity 4 71 0 352 303 64 18 chr1 78209772 78209881 -203983783 + L2 LINE L2 3147 3260 -12 458 330 96 5 chr1 78209984 78210193 -203983471 + MIR SINE MIR 35 262 0 249 57 0 0 chr1 78210309 78210344 -203983320 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2164 62 43 4 chr1 78210346 78210622 -203983042 - AluY SINE Alu -24 287 1 312 253 233 14 chr1 78210651 78210797 -203982867 - MIR3 SINE MIR -19 189 12 418 289 115 41 chr1 78211686 78211904 -203981760 + MIR SINE MIR 28 261 -1 2179 92 0 11 chr1 78212387 78212671 -203980993 + AluSx SINE Alu 3 283 -29 234 0 0 0 chr1 78212671 78212697 -203980967 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 262 228 236 24 chr1 78213022 78213145 -203980519 + MIR SINE MIR 31 179 -83 194 250 98 87 chr1 78213867 78213959 -203979705 + MIR SINE MIR 20 112 -150 366 302 16 40 chr1 78214017 78214143 -203979521 - L2 LINE L2 0 3313 3191 430 289 51 15 chr1 78214700 78214908 -203978756 - MER20B DNA MER1_type 0 219 4 218 300 46 77 chr1 78215012 78215142 -203978522 - L2 LINE L2 -556 2758 2633 253 314 107 38 chr1 78215553 78215712 -203977952 + L2 LINE L2 2629 2798 -516 286 362 40 11 chr1 78215774 78215951 -203977713 + L2 LINE L2 2902 3083 -189 682 145 177 0 chr1 78216002 78216126 -203977538 + MER3 DNA MER1_type 1 146 -63 310 222 222 0 chr1 78216162 78216261 -203977403 + L2 LINE L2 3191 3311 -2 206 306 9 17 chr1 78216413 78216505 -203977159 + MIR SINE MIR 47 140 -68 274 268 0 0 chr1 78216733 78216804 -203976860 - MER116 DNA Mariner -9 71 1 236 128 0 26 chr1 78217589 78217628 -203976036 - MIR SINE MIR -5 257 220 907 217 46 0 chr1 78217891 78218066 -203975598 + MER5A DNA MER1_type 6 188 -1 615 313 46 92 chr1 78219502 78219993 -203973671 - L2 LINE L2 -460 2854 2342 2152 107 4 0 chr1 78219993 78220273 -203973391 + AluSp SINE Alu 1 281 -32 387 0 0 0 chr1 78220273 78220316 -203973348 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 615 313 46 92 chr1 78220316 78220475 -203973189 - L2 LINE L2 -970 2344 2233 742 193 30 0 chr1 78221860 78221995 -203971669 + FRAM SINE Alu 27 165 -11 225 0 0 0 chr1 78222017 78222042 -203971622 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2157 269 354 22 chr1 78222256 78224578 -203969086 + L2 LINE L2 210 3304 -9 325 247 19 14 chr1 78224925 78225040 -203968624 - MIR SINE MIR -63 145 28 486 279 22 0 chr1 78226518 78226654 -203967010 - L2 LINE L2 0 3313 3175 236 224 357 0 chr1 78229424 78229522 -203964142 - MIR SINE MIR -13 249 117 7283 233 29 39 chr1 78229581 78230391 -203963273 + L1M4 LINE L1 2422 3239 -2907 2237 114 0 10 chr1 78230391 78230699 -203962965 + AluSx SINE Alu 5 309 -3 7283 233 29 39 chr1 78230699 78231336 -203962328 + L1M4 LINE L1 3239 3881 -2265 189 0 0 0 chr1 78231336 78231357 -203962307 + (TATAA)n Simple_repeat Simple_repeat 2 22 0 7283 233 29 39 chr1 78231357 78232402 -203961262 + L1M4 LINE L1 3881 4890 -1256 295 298 21 11 chr1 78232957 78233015 -203960649 + MIR3 SINE MIR 93 154 -54 1794 161 46 22 chr1 78233015 78233381 -203960283 - THE1C LTR MaLR 0 375 1 295 298 21 11 chr1 78233381 78233416 -203960248 + MIR3 SINE MIR 154 187 -21 887 232 62 44 chr1 78233487 78233759 -203959905 - L2 LINE L2 -16 3297 3021 3163 279 87 27 chr1 78233789 78235054 -203958610 - L2 LINE L2 -420 2894 1554 1498 307 204 9 chr1 78235076 78235932 -203957732 - L2 LINE L2 -2243 1071 49 867 248 98 0 chr1 78236175 78236389 -203957275 - MIR SINE MIR -23 239 5 1953 129 9 31 chr1 78236903 78237221 -203956443 + AluSx SINE Alu 1 311 -1 196 222 130 0 chr1 78237530 78237584 -203956080 - MIR SINE MIR -3 259 199 310 309 133 12 chr1 78237907 78238072 -203955592 + MLT1J LTR MaLR 98 282 -229 719 299 97 30 chr1 78238171 78238904 -203954760 + L1MC/D LINE L1 3690 4471 -1675 736 213 50 79 chr1 78238905 78239145 -203954519 + L1MD2 LINE L1 6065 6297 -62 983 103 32 26 chr1 78239161 78239316 -203954348 - AluSx SINE Alu -27 283 128 312 200 0 0 chr1 78239316 78239381 -203954283 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 265 296 0 0 chr1 78239382 78239470 -203954194 + L1MC4 LINE L1 6614 6701 -1341 231 36 0 0 chr1 78239470 78239498 -203954166 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 0 0 0 chr1 78239497 78239518 -203954146 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 1000 77 31 0 chr1 78239518 78239648 -203954016 - AluSx SINE Alu -178 134 1 283 78 38 0 chr1 78239648 78239715 -203953949 + L1MD1 LINE L1 6173 6359 0 392 308 72 15 chr1 78239767 78240098 -203953566 + L1MC/D LINE L1 4496 4845 -1301 893 277 72 23 chr1 78240368 78240783 -203952881 + L1MC/D LINE L1 5156 5589 -773 500 220 50 7 chr1 78240821 78240962 -203952702 + MER104 DNA Tc2 31 177 -3 984 247 18 4 chr1 78240965 78241192 -203952472 + L1MC/D LINE L1 5588 5817 -1991 203 161 0 0 chr1 78241240 78241271 -203952393 + polypurine Low_complexity Low_complexity 2 32 0 1080 206 23 9 chr1 78241608 78241822 -203951842 + MLT1D LTR MaLR 1 217 -288 3383 130 20 19 chr1 78241847 78242349 -203951315 + L1MA6 LINE L1 5175 5790 -510 285 98 0 0 chr1 78242349 78242390 -203951274 + (TA)n Simple_repeat Simple_repeat 2 42 0 3383 130 20 19 chr1 78242390 78242750 -203950914 + L1MA6 LINE L1 5790 6148 -152 876 268 63 51 chr1 78242750 78243099 -203950565 + MER20B DNA MER1_type 125 546 -237 2107 139 0 0 chr1 78243099 78243408 -203950256 - AluSq SINE Alu -4 309 1 876 268 63 51 chr1 78243408 78243643 -203950021 + MER20B DNA MER1_type 546 777 -6 910 183 26 21 chr1 78243661 78243852 -203949812 + MER3 DNA MER1_type 6 197 -12 247 245 0 19 chr1 78244152 78244205 -203949459 - MIR SINE MIR -181 81 30 413 275 217 10 chr1 78245017 78245224 -203948440 + MIR SINE MIR 9 258 -4 245 272 11 54 chr1 78245285 78245377 -203948287 + MIR SINE MIR 20 107 -155 197 320 0 0 chr1 78245665 78245715 -203947949 + L2 LINE L2 3254 3303 -10 204 326 23 12 chr1 78245928 78246014 -203947650 - MIR SINE MIR -110 152 66 2381 80 3 3 chr1 78246051 78246353 -203947311 - AluSp SINE Alu -11 302 1 405 0 0 0 chr1 78246979 78247024 -203946640 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 231 19 0 chr1 78247441 78247493 -203946171 - L2 LINE L2 -5 3308 3256 620 190 25 0 chr1 78247494 78247615 -203946049 + MER3 DNA MER1_type 10 133 -76 1637 158 11 21 chr1 78247615 78247939 -203945725 - AluJo SINE Alu 0 321 1 725 287 126 0 chr1 78248508 78248738 -203944926 - MIR SINE MIR -2 260 2 204 100 40 20 chr1 78248803 78248853 -203944811 + CT-rich Low_complexity Low_complexity 4 54 0 249 224 0 0 chr1 78248869 78248927 -203944737 + (CTA)n Simple_repeat Simple_repeat 2 59 0 966 285 30 0 chr1 78248927 78249162 -203944502 + MIR SINE MIR 3 244 -18 272 174 0 0 chr1 78250246 78250292 -203943372 + L2 LINE L2 3268 3313 0 383 336 118 17 chr1 78250494 78250732 -203942932 - MIR SINE MIR 0 262 1 22 35 0 0 chr1 78251431 78251460 -203942204 + AT_rich Low_complexity Low_complexity 1 29 0 1618 289 87 22 chr1 78251851 78252453 -203941211 - L1M4 LINE L1 -1951 4195 3499 1612 155 123 3 chr1 78252453 78252763 -203940901 + MER7A DNA MER2_type 2 346 0 1618 289 87 22 chr1 78252763 78253169 -203940495 - L1M4 LINE L1 -2647 3499 3121 1261 212 104 21 chr1 78253168 78253503 -203940161 - L1ME LINE L1 -459 5703 5341 * 378 300 73 0 chr1 78253502 78253652 -203940012 + L1MC/D LINE L1 5586 5746 -2062 * 7167 54 7 0 chr1 78303872 78305062 -203888602 + L1PA7 LINE L1 4957 6154 0 21 57 0 0 chr1 78306847 78306882 -203886782 + AT_rich Low_complexity Low_complexity 1 35 0 955 215 74 18 chr1 78307135 78307461 -203886203 + LTR37A LTR ERV1 71 414 -12 221 339 0 0 chr1 78307536 78307598 -203886066 - L2 LINE L2 -10 3262 3201 615 296 19 33 chr1 78307729 78307942 -203885722 + MIR SINE MIR 47 256 -6 181 328 0 0 chr1 78309285 78309343 -203884321 - L2 LINE L2 -1 3312 3255 261 144 19 39 chr1 78309427 78309531 -203884133 + (TATAA)n Simple_repeat Simple_repeat 5 106 0 205 107 18 54 chr1 78309532 78309588 -203884076 + (TA)n Simple_repeat Simple_repeat 2 55 0 1707 155 52 16 chr1 78309588 78309898 -203883766 + MER2 DNA MER2_type 2 322 -23 206 323 0 0 chr1 78310375 78310437 -203883227 + MIR SINE MIR 184 245 -17 3569 266 63 122 chr1 78310437 78311766 -203881898 + L2 LINE L2 807 2213 -1100 984 240 5 14 chr1 78311766 78311987 -203881677 + MER58A DNA MER1_type 1 219 -5 3569 266 63 122 chr1 78311987 78312946 -203880718 + L2 LINE L2 2213 3158 -155 1819 156 0 40 chr1 78312946 78313248 -203880416 - AluSx SINE Alu -3 309 20 3569 266 63 122 chr1 78313248 78313319 -203880345 + L2 LINE L2 3158 3232 -81 312 281 0 0 chr1 78313421 78313478 -203880186 + L2 LINE L2 3245 3301 -12 237 280 40 73 chr1 78313771 78313854 -203879810 + L2 LINE L2 2652 2729 -585 1932 164 22 27 chr1 78313854 78314219 -203879445 + MLT1A1 LTR MaLR 1 363 -2 237 280 40 73 chr1 78314219 78314285 -203879379 + L2 LINE L2 2729 2796 -518 2236 244 80 49 chr1 78314600 78314755 -203878909 - L1MC4a LINE L1 0 7808 7659 2399 61 10 3 chr1 78314755 78315073 -203878591 + AluY SINE Alu 1 311 0 2236 244 80 49 chr1 78315073 78315841 -203877823 - L1MC4a LINE L1 -149 7659 6856 1256 265 28 20 chr1 78315836 78316295 -203877369 - L1MC4a LINE L1 -1195 6613 6202 * 6304 153 42 27 chr1 78316324 78317479 -203876185 + Tigger1 DNA MER2_type 1 1172 -1246 6778 153 12 2 chr1 78317485 78318586 -203875078 + Tigger1 DNA MER2_type 1306 2417 -1 1217 266 81 44 chr1 78318608 78318850 -203874814 - L1MCc LINE L1 -4442 2680 2448 2289 109 3 0 chr1 78318850 78319152 -203874512 - AluSq SINE Alu -10 303 1 1217 266 81 44 chr1 78319152 78320254 -203873410 - L1MCc LINE L1 -4674 2448 1119 748 189 0 0 chr1 78321549 78321671 -203871993 - FLAM_C SINE Alu -11 122 1 180 0 0 0 chr1 78321747 78321767 -203871897 + (T)n Simple_repeat Simple_repeat 1 20 0 1254 113 11 0 chr1 78322158 78322335 -203871329 - Charlie3 DNA MER1_type -5 2705 2527 1469 66 0 5 chr1 78322335 78322532 -203871132 - L1P5 LINE L1 -377 5774 5579 551 256 161 9 chr1 78323255 78323478 -203870186 + MIR SINE MIR 1 257 -5 226 308 0 0 chr1 78323635 78323700 -203869964 + CT-rich Low_complexity Low_complexity 4 68 0 314 245 64 0 chr1 78323700 78323794 -203869870 - L1MC5 LINE L1 -44 7917 7818 276 328 96 24 chr1 78324493 78324618 -203869046 - L2 LINE L2 0 3272 3139 261 308 28 0 chr1 78324619 78324726 -203868938 - L2 LINE L2 -261 3011 2902 180 111 0 0 chr1 78324738 78324765 -203868899 - L3 LINE CR1 -316 1261 1235 * 259 277 181 0 chr1 78324745 78324828 -203868836 + L2 LINE L2 3208 3305 -8 228 298 30 15 chr1 78325003 78325134 -203868530 + MER103 DNA DNA 34 166 0 247 335 88 36 chr1 78325402 78325596 -203868068 - L2 LINE L2 -851 2463 2260 232 258 76 0 chr1 78325633 78325699 -203867965 - L3 LINE CR1 -267 1310 1240 1487 196 59 12 chr1 78325699 78326040 -203867624 - MLT1A1 LTR MaLR -2 363 7 495 316 24 6 chr1 78326045 78326213 -203867451 - L3 LINE CR1 -330 1247 1077 217 288 91 0 chr1 78326732 78326798 -203866866 + L2 LINE L2 3242 3313 0 22 35 0 0 chr1 78327012 78327041 -203866623 + AT_rich Low_complexity Low_complexity 1 29 0 321 293 142 8 chr1 78327081 78327248 -203866416 - MIR SINE MIR -60 148 5 242 304 196 6 chr1 78327893 78328051 -203865613 - MIR SINE MIR -73 189 2 2976 201 110 11 chr1 78328382 78329047 -203864617 + L1M2b LINE L1 1 731 -6478 12608 179 31 48 chr1 78329110 78329376 -203864288 - L1 LINE L1 -843 6005 5736 2199 87 38 0 chr1 78329376 78329663 -203864001 - AluSg SINE Alu -12 298 1 12608 179 31 48 chr1 78329663 78333146 -203860518 - L1 LINE L1 -1112 5736 2324 298 425 113 5 chr1 78333829 78334050 -203859614 + L2 LINE L2 2979 3223 -49 210 182 0 18 chr1 78334679 78334734 -203858930 + A-rich Low_complexity Low_complexity 2 55 0 311 65 22 0 chr1 78334762 78334808 -203858856 + (CA)n Simple_repeat Simple_repeat 2 48 0 210 293 170 9 chr1 78335858 78335964 -203857700 + MER91C DNA MER1_type 18 140 0 2147 112 3 13 chr1 78336160 78336463 -203857201 + AluSx SINE Alu 1 300 -12 37 0 0 0 chr1 78337443 78337480 -203856184 + AT_rich Low_complexity Low_complexity 1 37 0 312 191 16 0 chr1 78337994 78338057 -203855607 - MLT1I LTR MaLR -24 385 322 195 200 0 0 chr1 78338494 78338529 -203855135 + L2 LINE L2 3229 3263 -9 7133 129 26 10 chr1 78340347 78341426 -203852238 - THE1-int LTR MaLR -93 1487 392 1334 162 0 9 chr1 78341433 78341643 -203852021 + AluSg/x SINE Alu 88 295 -17 33 66 0 0 chr1 78342256 78342317 -203851347 + AT_rich Low_complexity Low_complexity 1 61 0 908 93 8 0 chr1 78342340 78342469 -203851195 - L1PA7 LINE L1 -4 6150 6021 2237 170 76 45 chr1 78342830 78343318 -203850346 - MLT1D LTR MaLR 0 505 3 289 351 24 11 chr1 78344253 78344435 -203849229 + MIR SINE MIR 7 189 -73 1920 194 112 24 chr1 78344599 78345063 -203848601 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chr1 78345948 78345971 -203847693 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 78346968 78346997 -203846667 + AT_rich Low_complexity Low_complexity 1 29 0 1883 131 0 4 chr1 78347062 78347322 -203846342 - AluSx SINE Alu -40 272 14 257 354 137 17 chr1 78347812 78347987 -203845677 - MIR SINE MIR -54 208 13 180 111 0 0 chr1 78348009 78348036 -203845628 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 306 325 44 9 chr1 78348190 78348304 -203845360 + MLT1K LTR MaLR 182 299 -289 241 295 45 45 chr1 78348380 78348536 -203845128 + MLT1L LTR MaLR 429 584 -31 433 237 65 11 chr1 78348747 78348933 -203844731 + L1ME4a LINE L1 5713 5908 -213 252 143 0 0 chr1 78348934 78348969 -203844695 + Alu SINE Alu 1 35 -267 1042 181 6 6 chr1 78348969 78349199 -203844465 + AluSg/x SINE Alu 105 334 0 31 68 0 0 chr1 78349272 78349331 -203844333 + AT_rich Low_complexity Low_complexity 1 59 0 32 26 0 0 chr1 78349409 78349448 -203844216 + AT_rich Low_complexity Low_complexity 1 39 0 274 270 0 0 chr1 78349905 78349979 -203843685 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 522 79 0 0 chr1 78349999 78350075 -203843589 + (TCCA)n Simple_repeat Simple_repeat 2 77 0 1816 134 4 0 chr1 78350439 78350755 -203842909 + AluSp SINE Alu 41 357 0 262 262 0 16 chr1 78350795 78350856 -203842808 + L2 LINE L2 3187 3246 -67 506 296 133 13 chr1 78351801 78352352 -203841312 - L1ME4a LINE L1 -5 6116 5500 371 359 114 27 chr1 78352464 78352876 -203840788 + MLT1K LTR MaLR 139 586 -2 23 0 0 0 chr1 78352974 78352997 -203840667 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 78353037 78353061 -203840603 + AT_rich Low_complexity Low_complexity 1 24 0 26 82 0 0 chr1 78353143 78353204 -203840460 + AT_rich Low_complexity Low_complexity 1 61 0 427 189 0 0 chr1 78354644 78354718 -203838946 - MER58A DNA MER1_type 0 224 151 * 994 230 20 0 chr1 78354706 78354902 -203838762 - MER58A DNA MER1_type -24 200 1 185 328 57 68 chr1 78355224 78355401 -203838263 + L2 LINE L2 2808 2982 -290 314 199 37 140 chr1 78355408 78355544 -203838120 + L3 LINE CR1 1364 1485 -92 948 256 79 74 chr1 78355552 78355958 -203837706 + LTR16A1 LTR ERVL 9 416 -41 628 279 88 18 chr1 78356033 78356259 -203837405 + MIR SINE MIR 6 247 -15 22 35 0 0 chr1 78356488 78356517 -203837147 + AT_rich Low_complexity Low_complexity 1 29 0 313 153 169 0 chr1 78357109 78357168 -203836496 + MLT1G LTR MaLR 4 72 -523 1170 243 36 71 chr1 78357169 78357600 -203836064 - MLT1E1 LTR MaLR 0 654 119 1353 224 50 39 chr1 78357608 78357969 -203835695 - MLT1A2 LTR MaLR -6 368 4 285 274 55 0 chr1 78358036 78358109 -203835555 - MLT1E1 LTR MaLR -465 128 52 779 265 108 94 chr1 78358135 78358700 -203834964 + MLT1G LTR MaLR 37 590 0 1086 173 9 44 chr1 78360078 78360303 -203833361 - AluJb SINE Alu -10 302 86 30 27 0 0 chr1 78362087 78362124 -203831540 + AT_rich Low_complexity Low_complexity 1 37 0 * 235 295 13 26 chr1 78362109 78362187 -203831477 + L2 LINE L2 3227 3303 -10 546 255 222 0 chr1 78362305 78362458 -203831206 + MIR SINE MIR 6 192 -70 287 214 0 51 chr1 78362458 78362556 -203831108 + L1MC4 LINE L1 6611 6703 -1339 525 245 46 13 chr1 78362860 78363011 -203830653 + MIR SINE MIR 77 232 -30 930 66 0 0 chr1 78363549 78363671 -203829993 - L1PA6 LINE L1 -7 6147 6026 3642 32 9 0 chr1 78363671 78364104 -203829560 - L1PA5 LINE L1 -3 6151 5710 663 280 34 0 chr1 78364558 78364733 -203828931 - MIR SINE MIR -16 246 66 202 341 124 0 chr1 78365516 78365645 -203828019 + MIR SINE MIR 48 192 -70 2638 192 37 7 chr1 78365727 78366230 -203827434 + MLT2B1 LTR ERVL 3 663 0 547 217 84 14 chr1 78366773 78366916 -203826748 + L2 LINE L2 3161 3313 0 226 25 25 50 chr1 78367007 78367047 -203826617 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 405 295 184 19 chr1 78368297 78368466 -203825198 + MLT1J2 LTR MaLR 41 181 -269 999 200 66 56 chr1 78368466 78368548 -203825116 - MER33 DNA MER1_type -2261 324 244 2077 111 0 3 chr1 78368548 78368895 -203824769 + AluSx SINE Alu 1 346 0 999 200 66 56 chr1 78368895 78369130 -203824534 - MER33 DNA MER1_type -2341 244 2 405 295 184 19 chr1 78369130 78369275 -203824389 + MLT1J2 LTR MaLR 181 407 -43 1630 39 24 0 chr1 78369290 78369497 -203824167 + L1PA5 LINE L1 5936 6147 -7 302 333 8 8 chr1 78369607 78369727 -203823937 + MLT1I LTR MaLR 71 190 -219 198 176 0 0 chr1 78369772 78369823 -203823841 + A-rich Low_complexity Low_complexity 1 51 0 321 304 152 11 chr1 78370286 78370470 -203823194 - L2 LINE L2 -21 3292 3083 300 415 0 0 chr1 78371018 78371141 -203822523 - MIR SINE MIR -122 140 18 242 393 89 5 chr1 78371684 78371908 -203821756 + L2 LINE L2 1203 1445 -1869 337 329 48 7 chr1 78372107 78372253 -203821411 - MIR SINE MIR -74 188 37 285 98 0 0 chr1 78374033 78374074 -203819590 + (TG)n Simple_repeat Simple_repeat 2 42 0 360 368 69 13 chr1 78374543 78374774 -203818890 + MIR SINE MIR 15 258 -4 821 239 56 9 chr1 78374972 78375185 -203818479 - MER58A DNA MER1_type 0 224 2 336 195 92 23 chr1 78375253 78375340 -203818324 + MER58B DNA MER1_type 249 341 0 2047 171 92 0 chr1 78376003 78376395 -203817269 - MSTC LTR MaLR 0 428 1 472 324 40 43 chr1 78376745 78376953 -203816711 + HAL1b LINE L1 60 268 -1080 2304 103 3 0 chr1 78376953 78377264 -203816400 + AluSq SINE Alu 1 312 -1 472 324 40 43 chr1 78377264 78377379 -203816285 + HAL1b LINE L1 268 382 -966 314 319 72 18 chr1 78377428 78377594 -203816070 + HAL1b LINE L1 482 656 -692 642 293 62 72 chr1 78377811 78378722 -203814942 + L1MEc LINE L1 2030 2899 -3316 1014 315 77 35 chr1 78378764 78380231 -203813433 + L1MEc LINE L1 3054 4581 -1634 1090 159 0 39 chr1 78380305 78380487 -203813177 - AluJo SINE Alu -92 220 46 564 296 79 45 chr1 78380533 78381442 -203812222 + L1MEc LINE L1 4619 5551 -743 * 659 279 47 14 chr1 78381437 78381652 -203812012 - L1MEc LINE L1 -6122 274 53 2393 57 3 3 chr1 78381678 78381979 -203811685 - AluY SINE Alu -10 301 1 1858 154 130 16 chr1 78382170 78382554 -203811110 + MSTA LTR MaLR 1 428 0 450 279 67 77 chr1 78382625 78383226 -203810438 - L1MEd LINE L1 -4930 1189 595 225 359 85 0 chr1 78384262 78384368 -203809296 + L2 LINE L2 3154 3268 -4 595 217 9 0 chr1 78384489 78384604 -203809060 - MER44D DNA MER2_type -1 604 489 408 155 0 0 chr1 78384616 78384687 -203808977 + (CA)n Simple_repeat Simple_repeat 2 72 0 1053 186 85 32 chr1 78384695 78384942 -203808722 - MER44D DNA MER2_type -79 530 1 4191 222 13 12 chr1 78385661 78387084 -203806580 - L1MB5 LINE L1 -6 6168 4745 382 310 99 38 chr1 78387273 78387486 -203806178 + MIR SINE MIR 5 230 -32 252 0 0 0 chr1 78387521 78387549 -203806115 + (T)n Simple_repeat Simple_repeat 1 28 0 195 100 0 0 chr1 78387733 78387763 -203805901 + (TG)n Simple_repeat Simple_repeat 2 31 0 369 277 87 51 chr1 78388126 78388321 -203805343 + MIR SINE MIR 45 246 -16 2330 103 26 34 chr1 78388859 78389166 -203804498 + THE1C LTR MaLR 1 306 -69 2370 95 0 0 chr1 78389166 78389472 -203804192 - AluY SINE Alu -4 307 2 2330 103 26 34 chr1 78389472 78389542 -203804122 + THE1C LTR MaLR 306 375 0 418 336 31 0 chr1 78389860 78389988 -203803676 + MLT1K LTR MaLR 3 134 -454 3882 183 43 6 chr1 78390016 78390807 -203802857 - L1MD1 LINE L1 0 6242 5423 1870 148 7 0 chr1 78390847 78391130 -203802534 - AluSg SINE Alu -25 285 1 496 194 75 52 chr1 78391184 78391318 -203802346 + L1MC1 LINE L1 6197 6333 0 279 143 36 0 chr1 78391316 78391372 -203802292 - L1M4 LINE L1 -3454 2692 2635 * 197 345 65 43 chr1 78392401 78392633 -203801031 + L2 LINE L2 1914 2150 -1164 256 420 36 20 chr1 78392961 78393211 -203800453 + L2 LINE L2 2826 3079 -193 289 345 73 28 chr1 78393891 78394178 -203799486 + L2 LINE L2 2996 3295 -18 260 200 14 14 chr1 78394855 78394925 -203798739 - L1 LINE L1 -1142 5004 4935 468 222 26 0 chr1 78394933 78395086 -203798578 + (TATATG)n Simple_repeat Simple_repeat 3 159 0 2223 96 44 44 chr1 78395100 78395464 -203798200 - THE1B LTR MaLR 0 364 1 235 278 21 31 chr1 78395536 78395633 -203798031 + (TA)n Simple_repeat Simple_repeat 2 97 0 711 286 114 71 chr1 78395771 78396333 -203797331 + MLT1G1 LTR MaLR 10 595 0 535 291 52 49 chr1 78396363 78396607 -203797057 - L1MB5 LINE L1 -1522 4624 4382 1860 181 3 0 chr1 78396607 78396917 -203796747 - AluSx SINE Alu -1 311 1 535 291 52 49 chr1 78396917 78396968 -203796696 - L1MB5 LINE L1 -1764 4382 4333 1490 169 52 41 chr1 78396968 78397258 -203796406 - AluJo SINE Alu -17 295 3 535 291 52 49 chr1 78397258 78397408 -203796256 - L1MB5 LINE L1 -1813 4333 4177 245 167 0 0 chr1 78397418 78397460 -203796204 - HsTC2 DNA Tc2 -1 1897 1856 361 243 19 19 chr1 78397511 78397618 -203796046 - L1MB5 LINE L1 -1988 4158 4052 339 267 25 0 chr1 78397834 78397954 -203795710 - L1MB5 LINE L1 -2368 3778 3656 245 309 17 17 chr1 78397966 78398144 -203795520 - L1MB5 LINE L1 -2411 3735 3558 7327 149 24 36 chr1 78398204 78400621 -203793043 - L1MA8 LINE L1 -3 6288 3885 248 281 86 50 chr1 78400744 78401022 -203792642 - L1MEc LINE L1 -4662 1648 1361 691 335 83 21 chr1 78401089 78401797 -203791867 - L1MEc LINE L1 -4916 1203 452 42554 48 5 3 chr1 78401889 78408046 -203785618 - L1PA4 LINE L1 0 6155 3 242 260 210 10 chr1 78408856 78408956 -203784708 + L2 LINE L2 3194 3313 0 298 309 28 51 chr1 78409332 78409510 -203784154 - L3 LINE CR1 -181 1396 1223 305 217 43 0 chr1 78409785 78409854 -203783810 + MIR SINE MIR 122 193 -69 24 0 0 0 chr1 78410278 78410302 -203783362 + AT_rich Low_complexity Low_complexity 1 24 0 223 273 0 15 chr1 78410750 78410816 -203782848 - MIR SINE MIR -6 256 192 * 479 318 42 17 chr1 78410804 78411040 -203782624 - MIR SINE MIR -1 261 20 304 341 73 0 chr1 78411154 78411277 -203782387 - L2 LINE L2 -5 3267 3136 326 61 61 0 chr1 78411534 78411600 -203782064 + GA-rich Low_complexity Low_complexity 1 70 0 310 250 25 12 chr1 78413084 78413164 -203780500 + L2 LINE L2 3183 3263 -9 2171 138 0 0 chr1 78414315 78414627 -203779037 + AluSx SINE Alu 1 312 0 506 333 0 0 chr1 78414750 78414885 -203778779 - L2 LINE L2 0 3313 3179 392 304 58 10 chr1 78414956 78415127 -203778537 + MIR3 SINE MIR 19 192 -36 217 234 65 78 chr1 78416249 78416326 -203777338 + MER5A DNA MER1_type 104 179 -10 180 179 0 0 chr1 78416612 78416651 -203777013 + (TG)n Simple_repeat Simple_repeat 1 39 0 441 315 136 0 chr1 78417131 78417344 -203776320 - MIR SINE MIR -14 248 7 243 275 58 0 chr1 78417877 78417946 -203775718 - MIR3 SINE MIR -31 177 105 24 32 0 0 chr1 78418478 78418509 -203775155 + AT_rich Low_complexity Low_complexity 1 31 0 890 128 7 0 chr1 78418528 78418677 -203774987 + L1MA5 LINE L1 6121 6270 -30 333 328 38 38 chr1 78418882 78419068 -203774596 - MER5A DNA MER1_type -1 188 3 3418 194 22 40 chr1 78419078 78419163 -203774501 - L1MA9 LINE L1 -2 6310 6225 1077 206 131 8 chr1 78419163 78419415 -203774249 + AluJb SINE Alu 2 284 -18 180 0 0 0 chr1 78419419 78419439 -203774225 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3418 194 22 40 chr1 78419439 78420120 -203773544 - L1MA9 LINE L1 -90 6222 5555 2181 123 27 27 chr1 78420120 78420493 -203773171 - THE1C LTR MaLR -2 373 1 3418 194 22 40 chr1 78420493 78420614 -203773050 - L1MA9 LINE L1 -757 5555 5433 1870 152 4 0 chr1 78420614 78420927 -203772737 - AluSx SINE Alu 0 318 5 433 260 182 7 chr1 78420978 78421132 -203772532 + MER5A DNA MER1_type 9 189 0 1596 188 38 11 chr1 78421150 78421522 -203772142 - MLT1B LTR MaLR -8 382 1 298 347 61 92 chr1 78421626 78422540 -203771124 + L2 LINE L2 2370 3265 -7 1312 258 108 87 chr1 78423377 78424349 -203769315 + L2 LINE L2 2316 3313 0 180 376 50 20 chr1 78424573 78424674 -203768990 - L2 LINE L2 -851 2463 2360 813 301 9 0 chr1 78424843 78425062 -203768602 - MIR SINE MIR -6 256 36 252 0 0 0 chr1 78426253 78426281 -203767383 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 360 43 0 0 chr1 78426280 78426326 -203767338 + (GA)n Simple_repeat Simple_repeat 1 46 0 563 166 22 36 chr1 78427099 78427238 -203766426 + MIR SINE MIR 116 252 -10 367 250 193 23 chr1 78428074 78428186 -203765478 - MIR SINE MIR -10 252 160 1175 192 54 96 chr1 78428186 78428572 -203765092 + MLT1A2 LTR MaLR 1 370 -4 367 250 193 23 chr1 78428572 78428635 -203765029 - MIR SINE MIR -102 160 47 219 36 0 0 chr1 78428673 78428701 -203764963 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 328 296 74 45 chr1 78429035 78429211 -203764453 + L2 LINE L2 2078 2258 -1056 2001 144 121 23 chr1 78429290 78429678 -203763986 + MSTA LTR MaLR 3 428 0 9540 133 12 37 chr1 78429680 78431298 -203762366 + MSTA-int LTR MaLR 3 1580 0 1749 141 193 17 chr1 78431298 78431660 -203762004 + MSTA LTR MaLR 1 426 -2 44 56 0 0 chr1 78431824 78431896 -203761768 + AT_rich Low_complexity Low_complexity 1 72 0 214 232 37 0 chr1 78431911 78431952 -203761712 + (TTAAA)n Simple_repeat Simple_repeat 1 39 -46 12181 131 48 2 chr1 78431952 78432542 -203761122 + L1PA10 LINE L1 3237 3798 -2370 2096 133 0 7 chr1 78432542 78432850 -203760814 + AluSx SINE Alu 1 306 -6 12181 131 48 2 chr1 78432850 78435176 -203758488 + L1PA10 LINE L1 3798 6164 -4 214 232 37 0 chr1 78435176 78435216 -203758448 + (TTAAA)n Simple_repeat Simple_repeat 39 85 0 663 305 72 47 chr1 78435220 78435581 -203758083 - L2 LINE L2 -6 3307 2938 225 237 53 40 chr1 78435739 78435815 -203757849 + MIR SINE MIR 126 202 -60 864 187 43 176 chr1 78435815 78436350 -203757314 + MLT2C2 LTR ERVL 1 464 0 21 36 0 0 chr1 78436379 78436407 -203757257 + AT_rich Low_complexity Low_complexity 1 28 0 319 299 37 30 chr1 78436589 78436723 -203756941 + L2 LINE L2 3179 3313 0 326 275 81 57 chr1 78437114 78437325 -203756339 - MLT1I LTR MaLR -192 217 2 462 293 73 12 chr1 78437931 78438177 -203755487 + MIR SINE MIR 2 262 0 440 284 53 9 chr1 78438244 78438403 -203755261 - MIR SINE MIR -57 205 35 4465 89 16 3 chr1 78438978 78439609 -203754055 - L1PA8A LINE L1 -2 6129 5491 4894 118 8 3 chr1 78439609 78440528 -203753136 + L1PA8A LINE L1 4576 5496 -635 355 268 82 0 chr1 78440535 78440632 -203753032 - MIR SINE MIR -110 152 48 369 316 0 50 chr1 78440808 78440947 -203752717 + L2 LINE L2 3182 3313 0 553 323 40 13 chr1 78441022 78441248 -203752416 + MLT1H LTR MaLR 3 234 -315 244 235 84 42 chr1 78441350 78441469 -203752195 + MLT1H LTR MaLR 428 533 -16 21 57 0 0 chr1 78441939 78441974 -203751690 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 78442828 78442856 -203750808 + AT_rich Low_complexity Low_complexity 1 28 0 289 264 128 24 chr1 78442938 78443063 -203750601 + MIR SINE MIR 9 146 -116 505 160 0 20 chr1 78443231 78443331 -203750333 + MER4A LTR ERV1 1 98 -566 1496 122 174 72 chr1 78443331 78443692 -203749972 + MER4A LTR ERV1 261 658 -6 364 202 101 55 chr1 78444611 78444720 -203748944 - L2 LINE L2 -2 3311 3198 278 248 119 10 chr1 78444737 78444838 -203748826 + L2 LINE L2 3186 3297 -16 2192 107 10 0 chr1 78445052 78445343 -203748321 + AluSg SINE Alu 1 294 -16 315 0 0 0 chr1 78446035 78446070 -203747594 + (TG)n Simple_repeat Simple_repeat 2 36 0 193 341 52 38 chr1 78446872 78447083 -203746581 + L2 LINE L2 2840 3053 -219 649 208 12 102 chr1 78447404 78447556 -203746108 - L1ME LINE L1 -5842 228 105 2034 138 12 6 chr1 78447556 78447897 -203745767 - L1PA13 LINE L1 -11 6152 5810 649 208 12 102 chr1 78447897 78447989 -203745675 - L1ME LINE L1 -5965 105 6 1165 306 119 17 chr1 78448348 78449303 -203744361 - L1MEc LINE L1 -3081 3134 2111 523 314 70 65 chr1 78449520 78449873 -203743791 - HAL1 LINE L1 -744 1763 1404 2438 56 0 0 chr1 78449873 78450181 -203743483 - AluY SINE Alu 0 308 1 523 314 70 65 chr1 78450181 78450223 -203743441 - HAL1 LINE L1 -1103 1404 1364 236 295 86 54 chr1 78450252 78450523 -203743141 - L1MEc LINE L1 -4902 1303 1015 2745 114 24 7 chr1 78450523 78450944 -203742720 + MSTA LTR MaLR 1 428 0 236 295 86 54 chr1 78450944 78451058 -203742606 - L1MEc LINE L1 -5190 1015 906 228 256 149 8 chr1 78451444 78451565 -203742099 - L1MEc LINE L1 -5964 241 104 358 344 58 30 chr1 78451574 78452036 -203741628 - L1MEd LINE L1 -5233 886 412 253 241 25 13 chr1 78452298 78452377 -203741287 - L1MEd LINE L1 -6037 82 3 3493 280 101 33 chr1 78452991 78454485 -203739179 + L2 LINE L2 1431 3025 -288 222 37 0 0 chr1 78454488 78454515 -203739149 + (T)n Simple_repeat Simple_repeat 1 27 0 40991 32 22 1 chr1 78454518 78460546 -203733118 - L1HS LINE L1 0 6155 1 632 298 102 44 chr1 78460547 78460822 -203732842 + L2 LINE L2 3023 3313 0 196 316 35 0 chr1 78460953 78461010 -203732654 + L2 LINE L2 3014 3072 -200 429 222 54 39 chr1 78461983 78462186 -203731478 - MER20B DNA MER1_type -5 778 573 2190 142 11 6 chr1 78462270 78462623 -203731041 + THE1A LTR MaLR 1 355 0 10932 105 21 1 chr1 78462623 78464166 -203729498 + THE1A-int LTR MaLR 1 1575 -5 1992 153 14 8 chr1 78464170 78464523 -203729141 + THE1A LTR MaLR 1 355 0 373 298 65 56 chr1 78464708 78464923 -203728741 - MIR SINE MIR -17 245 29 180 304 43 29 chr1 78464937 78465006 -203728658 + L2 LINE L2 3239 3308 -5 204 40 0 0 chr1 78466071 78466096 -203727568 + (T)n Simple_repeat Simple_repeat 1 25 0 1338 217 15 21 chr1 78466892 78467224 -203726440 - LTR37A LTR ERV1 -20 406 77 296 308 9 106 chr1 78467264 78467491 -203726173 + MIR SINE MIR 28 232 -30 330 306 163 25 chr1 78467503 78467663 -203726001 - MIR SINE MIR 0 262 81 27 49 0 0 chr1 78468306 78468347 -203725317 + AT_rich Low_complexity Low_complexity 1 41 0 2429 66 0 7 chr1 78468426 78468729 -203724935 - AluY SINE Alu -10 301 1 2269 80 3 10 chr1 78469477 78469801 -203723863 + AluSp SINE Alu 1 313 0 362 301 72 33 chr1 78470447 78470600 -203723064 + MIR SINE MIR 13 171 -91 408 261 174 16 chr1 78470630 78470814 -203722850 - MIR SINE MIR -19 243 31 1057 250 29 0 chr1 78471031 78471271 -203722393 + MIR SINE MIR 12 258 -4 309 308 14 0 chr1 78471570 78471713 -203721951 - MER103 DNA DNA -9 157 13 1396 192 92 55 chr1 78472068 78472448 -203721216 + MSTD LTR MaLR 3 396 0 8119 261 53 9 chr1 78474919 78475078 -203718586 + L1ME LINE L1 2113 2264 -3882 2370 70 0 52 chr1 78475078 78475406 -203718258 + AluY SINE Alu 1 311 0 8119 261 53 9 chr1 78475406 78477111 -203716553 + L1ME LINE L1 2264 4156 -1990 1704 186 28 0 chr1 78477111 78477401 -203716263 + AluJb SINE Alu 3 300 -12 8119 261 53 9 chr1 78477401 78478495 -203715169 + L1ME LINE L1 4156 5201 -945 17802 157 26 26 chr1 78478507 78481122 -203712542 + L1PB1 LINE L1 1 2615 -4252 2371 90 0 19 chr1 78481122 78481433 -203712231 - AluY SINE Alu -6 305 1 17802 157 26 26 chr1 78481433 78485294 -203708370 + L1PB1 LINE L1 2615 6508 -359 1113 59 2 0 chr1 78485294 78485503 -203708161 + (TA)n Simple_repeat Simple_repeat 1 165 0 17802 157 26 26 chr1 78485503 78485689 -203707975 + L1PB1 LINE L1 6508 6693 -174 216 130 74 0 chr1 78485691 78485745 -203707919 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 2370 113 25 0 chr1 78485747 78486110 -203707554 - L1P5 LINE L1 -362 5789 5418 2420 105 11 3 chr1 78486160 78486537 -203707127 + L1PB1 LINE L1 5791 6170 0 356 233 11 0 chr1 78486551 78486641 -203707023 + L1ME LINE L1 5188 5278 -868 2042 160 38 26 chr1 78486684 78487110 -203706554 + L1ME LINE L1 5358 5788 -378 345 267 173 94 chr1 78487198 78487497 -203706167 - MLT1L LTR MaLR -198 417 95 271 242 161 67 chr1 78487497 78487646 -203706018 - MER69A DNA AcHobo 0 177 15 287 330 34 0 chr1 78488053 78488141 -203705523 + MIR SINE MIR 65 155 -107 604 348 47 21 chr1 78488801 78489037 -203704627 - MIR SINE MIR -12 250 9 539 289 84 11 chr1 78489812 78490002 -203703662 + MIR SINE MIR 59 262 0 424 242 50 0 chr1 78490127 78490226 -203703438 - MIR SINE MIR -95 167 64 1758 149 27 56 chr1 78490390 78490765 -203702899 - THE1B LTR MaLR 0 364 1 547 362 77 42 chr1 78490811 78491242 -203702422 + L2 LINE L2 2827 3272 0 552 252 16 0 chr1 78491580 78491707 -203701957 + L3 LINE CR1 426 554 -1023 225 324 162 0 chr1 78491964 78492100 -203701564 + MIR SINE MIR 11 168 -94 9042 96 25 2 chr1 78492219 78493477 -203700187 - HSMAR1 DNA Mariner 0 1287 1 502 323 0 0 chr1 78493541 78493668 -203699996 + L2 LINE L2 3146 3272 0 304 328 99 76 chr1 78493720 78494165 -203699499 + L2 LINE L2 2848 3302 -11 813 301 48 30 chr1 78494237 78494673 -203698991 + MLT1J1 LTR MaLR 1 444 -2 5023 158 12 15 chr1 78494683 78495739 -203697925 + L1PB4 LINE L1 5100 6155 -1 213 339 0 0 chr1 78495739 78495798 -203697866 + L3 LINE CR1 1240 1298 -279 923 190 56 0 chr1 78495824 78496003 -203697661 + MER5A DNA MER1_type 1 189 0 309 288 54 18 chr1 78496034 78496145 -203697519 + MIR SINE MIR 79 193 -69 216 309 15 0 chr1 78496487 78496555 -203697109 + MIR SINE MIR 189 257 -5 468 301 8 8 chr1 78496561 78496684 -203696980 + L2 LINE L2 3190 3312 -1 512 128 0 0 chr1 78496863 78496941 -203696723 - MER5A DNA MER1_type -80 109 32 1332 231 77 33 chr1 78497135 78497745 -203695919 - L1MC5 LINE L1 -36 7925 7289 246 330 27 9 chr1 78498458 78498570 -203695094 + L2 LINE L2 3200 3313 0 2529 94 27 19 chr1 78500049 78500421 -203693243 + THE1C LTR MaLR 1 375 0 9514 115 42 38 chr1 78500421 78501994 -203691670 + THE1C-int LTR MaLR 1 1580 0 2405 108 32 19 chr1 78501994 78502364 -203691300 + THE1C LTR MaLR 1 375 0 230 276 0 0 chr1 78502400 78502458 -203691206 + MARNA DNA Mariner 344 401 -185 523 247 78 6 chr1 78502676 78502842 -203690822 + L2 LINE L2 48 225 -3089 1596 202 39 36 chr1 78502844 78503201 -203690463 - MLT1A1 LTR MaLR 0 365 8 1639 309 119 15 chr1 78503211 78503992 -203689672 + L2 LINE L2 223 1084 -2230 191 448 0 9 chr1 78503925 78504030 -203689634 + MIR SINE MIR 49 152 -56 * 543 267 37 12 chr1 78504047 78504208 -203689456 - MIR SINE MIR 0 262 98 284 192 0 41 chr1 78504633 78504706 -203688958 + MER116 DNA Mariner 9 78 -2 28 29 0 0 chr1 78505402 78505437 -203688227 + AT_rich Low_complexity Low_complexity 1 35 0 228 272 86 25 chr1 78505477 78505558 -203688106 + L2 LINE L2 3184 3269 -3 300 27 0 0 chr1 78506025 78506062 -203687602 + (CA)n Simple_repeat Simple_repeat 2 38 0 1244 301 31 46 chr1 78506078 78506663 -203687001 + L1M3b LINE L1 1 602 -4748 2703 266 44 33 chr1 78507132 78507917 -203685747 + L1M3b LINE L1 827 1601 -4749 1413 209 0 26 chr1 78507917 78508036 -203685628 + AluJo SINE Alu 1 122 -190 2510 58 0 0 chr1 78508036 78508330 -203685334 + AluY SINE Alu 1 294 -17 1413 209 0 26 chr1 78508330 78508517 -203685147 + AluJo SINE Alu 122 299 -13 2703 266 44 33 chr1 78508517 78509888 -203683776 + L1M3b LINE L1 1601 2697 -3653 626 196 49 0 chr1 78509872 78510015 -203683649 + L1MA7 LINE L1 5644 5793 -498 * 1776 173 15 24 chr1 78510022 78510358 -203683306 - MER7A DNA MER2_type -13 333 3 2376 166 30 24 chr1 78510358 78510863 -203682801 + L1MA7 LINE L1 5782 6289 -2 1783 247 72 53 chr1 78511086 78511622 -203682042 - MLT1E1 LTR MaLR 0 654 130 2109 161 26 3 chr1 78511622 78512001 -203681663 + MLT1B LTR MaLR 1 388 -2 2123 151 25 6 chr1 78512007 78512364 -203681300 - THE1B LTR MaLR 0 364 1 1783 247 72 53 chr1 78512364 78512443 -203681221 - MLT1E1 LTR MaLR -528 126 20 710 244 30 92 chr1 78512562 78512865 -203680799 + MLT1I LTR MaLR 118 401 -8 244 174 14 14 chr1 78513977 78514046 -203679618 + (TA)n Simple_repeat Simple_repeat 1 69 0 410 319 69 79 chr1 78514946 78515542 -203678122 + L2 LINE L2 2466 3064 -208 1620 187 60 11 chr1 78516113 78516461 -203677203 + MLT1A1 LTR MaLR 1 365 0 261 222 0 0 chr1 78516775 78516829 -203676835 - 5S rRNA rRNA -63 58 5 2010 134 8 36 chr1 78518065 78518430 -203675234 + THE1A LTR MaLR 1 355 0 209 383 85 22 chr1 78518755 78519118 -203674546 + L2 LINE L2 2490 2875 -439 305 304 76 0 chr1 78519358 78519450 -203674214 + L2 LINE L2 3166 3264 -8 270 341 87 8 chr1 78519977 78520103 -203673561 + L2 LINE L2 2219 2354 -960 373 307 114 83 chr1 78520743 78521163 -203672501 + L2 LINE L2 2320 2752 -562 2286 89 0 0 chr1 78521963 78522256 -203671408 + AluSq SINE Alu 1 293 -20 235 275 115 75 chr1 78523451 78523651 -203670013 - MIR SINE MIR -1 261 54 216 319 28 64 chr1 78523810 78523951 -203669713 - L2 LINE L2 -219 3053 2918 1627 223 52 22 chr1 78524252 78524714 -203668950 - L1MB8 LINE L1 0 6178 5703 196 291 150 31 chr1 78524728 78524855 -203668809 + L2 LINE L2 3122 3263 -9 850 296 39 42 chr1 78524894 78525255 -203668409 + LTR16A LTR ERVL 87 446 -4 4750 109 292 107 chr1 78525385 78526831 -203666833 - pTR5 LTR ERV1 0 2438 584 1916 188 41 5 chr1 78526870 78527259 -203666405 + MER57A LTR ERV1 1 403 0 1779 244 71 37 chr1 78528085 78528650 -203665014 - MER77 LTR ERV1 0 605 22 352 281 18 18 chr1 78529477 78529591 -203664073 + CT-rich Low_complexity Low_complexity 4 117 0 328 355 9 0 chr1 78529592 78529702 -203663962 - L2 LINE L2 -10 3303 3193 2071 216 61 11 chr1 78530430 78530907 -203662757 - MLT1D LTR MaLR -1 504 4 341 298 15 44 chr1 78532253 78532375 -203661289 + ERVL LTR ERVL 4505 4629 -1135 2504 51 0 6 chr1 78532375 78532686 -203660978 + AluY SINE Alu 1 309 -2 341 298 15 44 chr1 78532686 78532774 -203660890 + ERVL LTR ERVL 4629 4793 -971 448 361 41 30 chr1 78532815 78533253 -203660411 + ERVL LTR ERVL 4843 5285 -369 225 0 0 0 chr1 78534095 78534120 -203659544 + (A)n Simple_repeat Simple_repeat 1 25 0 318 358 7 15 chr1 78535023 78535160 -203658504 - L2 LINE L2 0 3272 3137 308 340 57 13 chr1 78535185 78535344 -203658320 - MIR SINE MIR -31 231 66 194 313 62 0 chr1 78536851 78536931 -203656733 + L2 LINE L2 3227 3311 -2 * 256 255 98 4 chr1 78536930 78537015 -203656649 - MIR SINE MIR -93 115 21 4146 122 1 26 chr1 78538404 78539060 -203654604 - L1PA14 LINE L1 -1 6160 5521 311 336 26 9 chr1 78539398 78539514 -203654150 + MIR SINE MIR 40 157 -105 7624 147 10 8 chr1 78539516 78540813 -203652851 - HSMAR2 DNA Mariner -2 1300 2 4659 91 6 39 chr1 78540819 78541493 -203652171 - PABL_A LTR ERV1 -8 652 1 277 341 44 100 chr1 78541638 78541731 -203651933 + L2 LINE L2 2970 3067 -205 2263 77 0 27 chr1 78541731 78542031 -203651633 - AluY SINE Alu -13 298 7 277 341 44 100 chr1 78542031 78542257 -203651407 + L2 LINE L2 3067 3271 -1 259 230 115 11 chr1 78543881 78543968 -203649696 - MER103 DNA DNA -8 158 63 228 67 0 0 chr1 78544286 78544316 -203649348 + (A)n Simple_repeat Simple_repeat 1 30 0 2042 108 25 0 chr1 78545015 78545349 -203648315 + AluSp SINE Alu 1 341 0 316 313 123 28 chr1 78546635 78546814 -203646850 - L2 LINE L2 -190 3082 2887 3878 229 25 55 chr1 78546821 78547890 -203645774 - MER45B DNA AcHobo 0 1040 4 7017 184 192 6 chr1 78548964 78550582 -203643082 + L1M4c LINE L1 16 1934 -4450 469 304 71 0 chr1 78550969 78551153 -203642511 + MIR SINE MIR 53 249 -13 181 267 105 29 chr1 78552300 78552405 -203641259 - MIR SINE MIR -93 169 57 4566 266 89 15 chr1 78552828 78555274 -203638390 + L1M4c LINE L1 1985 4687 -1695 1588 156 44 73 chr1 78555274 78555658 -203638006 - THE1C LTR MaLR -2 373 1 4566 266 89 15 chr1 78555658 78555904 -203637760 + L1M4c LINE L1 4687 4913 -1469 397 346 39 45 chr1 78556352 78556710 -203636954 - MLT1H LTR MaLR -142 407 52 756 295 25 65 chr1 78557266 78557591 -203636073 + Charlie8 DNA MER1_type 1 1399 -1018 2175 99 26 29 chr1 78557832 78558145 -203635519 + AluSx SINE Alu 1 312 0 234 91 0 0 chr1 78559765 78559798 -203633866 + (TTA)n Simple_repeat Simple_repeat 3 35 0 217 393 90 0 chr1 78560669 78560791 -203632873 - L2 LINE L2 -586 2728 2596 279 249 5 15 chr1 78560798 78560892 -203632772 - MLT1F1 LTR MaLR 0 580 477 13898 187 8 17 chr1 78560894 78564897 -203628767 - L1PB1 LINE L1 -27 6124 2161 1459 248 96 44 chr1 78564899 78565358 -203628306 - MLT1F1 LTR MaLR -54 513 6 2065 154 5 52 chr1 78565374 78565777 -203627887 + MLT1B LTR MaLR 7 390 0 180 356 36 50 chr1 78565825 78566044 -203627620 + L3 LINE CR1 249 464 -1113 1401 196 14 25 chr1 78566117 78566402 -203627262 + AluJb SINE Alu 1 282 -30 207 0 0 0 chr1 78566405 78566428 -203627236 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 746 295 106 22 chr1 78566448 78566760 -203626904 - LTR16A LTR ERVL -78 372 35 180 389 74 25 chr1 78566863 78567107 -203626557 - MIR SINE MIR -4 258 3 * 789 306 62 39 chr1 78567107 78567486 -203626178 + L3 LINE CR1 552 939 -638 208 359 49 43 chr1 78568231 78568415 -203625249 - MIR SINE MIR -61 201 17 371 240 42 0 chr1 78570324 78570420 -203623244 + L2 LINE L2 1834 1933 -1381 1980 180 9 3 chr1 78570421 78570765 -203622899 - MLT1B LTR MaLR -2 388 43 401 279 116 7 chr1 78570767 78570914 -203622750 + L2 LINE L2 2082 2244 -1070 1625 162 99 0 chr1 78570917 78571219 -203622445 + MER44D DNA MER2_type 3 604 -5 1271 289 86 49 chr1 78571286 78572036 -203621628 + L2 LINE L2 2336 3119 -194 2147 146 39 0 chr1 78572037 78572394 -203621270 - L1PB3 LINE L1 -2 6152 5782 252 184 0 0 chr1 78572394 78572443 -203621221 + (TA)n Simple_repeat Simple_repeat 1 49 0 286 236 22 0 chr1 78572448 78572537 -203621127 - L1MC4 LINE L1 -1340 6702 6612 9953 197 29 20 chr1 78572557 78573612 -203620052 - L1PB3 LINE L1 -363 5791 4747 1753 154 27 0 chr1 78573612 78573911 -203619753 - AluSx SINE Alu -5 307 1 9953 197 29 20 chr1 78573911 78575583 -203618081 - L1PB3 LINE L1 -1407 4747 3032 1705 204 3 0 chr1 78575583 78575877 -203617787 - AluJb SINE Alu -17 295 1 9953 197 29 20 chr1 78575877 78576148 -203617516 - L1PB3 LINE L1 -3122 3032 2765 11943 146 23 5 chr1 78576149 78578985 -203614679 - L1PA10 LINE L1 -11 6214 3326 2032 167 13 3 chr1 78579017 78579335 -203614329 - L1PA10 LINE L1 -5883 321 1 306 0 0 0 chr1 78629889 78629923 -203563741 + (TG)n Simple_repeat Simple_repeat 2 35 0 351 330 61 28 chr1 78629961 78630173 -203563491 + MIR SINE MIR 31 249 -13 324 262 140 3 chr1 78630178 78630315 -203563349 + MLT1L LTR MaLR 1 149 -362 833 229 14 40 chr1 78630642 78630905 -203562759 + L1ME2 LINE L1 5917 6333 -1 417 341 131 21 chr1 78630905 78631333 -203562331 + L3 LINE CR1 433 907 -670 387 164 0 0 chr1 78631578 78631639 -203562025 - AluSp/q SINE Alu -7 296 236 891 239 117 34 chr1 78631758 78632578 -203561086 + L1ME LINE L1 4338 5344 -820 228 67 0 0 chr1 78632578 78632608 -203561056 + (CA)n Simple_repeat Simple_repeat 1 30 0 891 239 117 34 chr1 78632608 78633039 -203560625 + L1ME LINE L1 5344 5738 -426 1765 237 20 13 chr1 78633868 78634265 -203559399 + L1PA12 LINE L1 1 400 -7181 3270 155 35 0 chr1 78634270 78634568 -203559096 + L1P LINE L1 3374 3660 -2486 194 0 39 0 chr1 78634568 78634594 -203559070 + (CA)n Simple_repeat Simple_repeat 2 28 0 3270 155 35 0 chr1 78634594 78634870 -203558794 + L1P LINE L1 3660 3968 -2178 1584 75 9 22 chr1 78634970 78635197 -203558467 - L1PA4 LINE L1 -31 6124 5901 390 332 44 40 chr1 78635566 78635840 -203557824 - L1MEd LINE L1 -4945 1125 851 188 35 35 0 chr1 78635866 78635895 -203557769 + (TA)n Simple_repeat Simple_repeat 2 31 0 243 213 85 43 chr1 78635903 78635997 -203557667 - L1MEd LINE L1 -5189 881 784 22 0 0 0 chr1 78636197 78636219 -203557445 + AT_rich Low_complexity Low_complexity 1 22 0 198 254 14 56 chr1 78636291 78636362 -203557302 - L3 LINE CR1 -214 1363 1296 1033 309 17 19 chr1 78636670 78637032 -203556632 - LTR16B LTR ERVL -9 455 95 3614 154 30 35 chr1 78637305 78638516 -203555148 - L1M1 LINE L1 -485 6520 5309 2746 186 26 4 chr1 78638513 78639056 -203554608 - L1M1 LINE L1 -4385 2464 1910 * 333 202 28 73 chr1 78639156 78639265 -203554399 - MLT1L LTR MaLR -355 260 157 220 122 0 49 chr1 78640111 78640152 -203553512 + L2 LINE L2 3174 3212 -101 215 222 42 0 chr1 78641119 78641191 -203552473 + (TA)n Simple_repeat Simple_repeat 1 75 0 2127 173 3 8 chr1 78641555 78641920 -203551744 + MLT1A1 LTR MaLR 2 364 -1 293 125 18 0 chr1 78642098 78642154 -203551510 + (TGGA)n Simple_repeat Simple_repeat 1 57 0 236 341 81 61 chr1 78642263 78642656 -203551008 - L2 LINE L2 0 3272 2872 342 272 0 122 chr1 78642964 78643111 -203550553 - MIR3 SINE MIR -39 169 41 255 266 11 21 chr1 78644103 78644197 -203549467 + (CATATA)n Simple_repeat Simple_repeat 4 96 0 762 293 70 28 chr1 78644205 78644605 -203549059 - Charlie7 DNA MER1_type -1948 664 248 23 33 0 0 chr1 78644767 78644797 -203548867 + AT_rich Low_complexity Low_complexity 1 30 0 359 303 77 13 chr1 78646051 78646206 -203547458 - MIR SINE MIR -12 250 86 1672 163 40 40 chr1 78647419 78647745 -203545919 + THE1B LTR MaLR 6 331 -33 23 33 0 0 chr1 78647938 78647968 -203545696 + AT_rich Low_complexity Low_complexity 1 30 0 281 351 9 27 chr1 78648224 78648335 -203545329 + L2 LINE L2 2951 3059 -213 203 289 144 10 chr1 78648403 78648500 -203545164 + L2 LINE L2 3199 3308 -5 1423 140 55 4 chr1 78648663 78648899 -203544765 + AluSg SINE Alu 60 307 -3 2043 128 7 0 chr1 78649532 78649820 -203543844 + AluSx SINE Alu 1 290 -22 330 360 80 36 chr1 78649989 78650377 -203543287 + L2 LINE L2 2722 3119 -194 3629 115 25 26 chr1 78650542 78651108 -203542556 + MER61E LTR ERV1 1 565 -4 373 346 55 46 chr1 78651248 78651465 -203542199 - MLT1K LTR MaLR -363 225 7 632 155 44 112 chr1 78651646 78651700 -203541964 - Charlie5 DNA MER1_type -28 2557 2501 2107 110 3 7 chr1 78651700 78652000 -203541664 + AluSg SINE Alu 1 299 -11 632 155 44 112 chr1 78652000 78652196 -203541468 - Charlie5 DNA MER1_type -84 2501 2324 1342 231 146 13 chr1 78652412 78652810 -203540854 - MER39 LTR ERV1 0 707 257 344 229 119 18 chr1 78652784 78652893 -203540771 - MER39 LTR ERV1 -571 136 17 * 276 263 34 68 chr1 78653789 78653907 -203539757 + L2 LINE L2 3200 3313 0 207 356 130 0 chr1 78653965 78654080 -203539584 + L3 LINE CR1 1446 1575 -2 186 150 0 0 chr1 78655224 78655264 -203538400 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 4336 107 51 18 chr1 78655816 78656477 -203537187 + LTR8 LTR ERV1 1 683 -8 3444 137 92 13 chr1 78656635 78656924 -203536740 - LTR9B LTR ERV1 0 644 379 180 0 0 0 chr1 78656924 78656944 -203536720 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3444 137 92 13 chr1 78656944 78657251 -203536413 - LTR9B LTR ERV1 -265 379 1 3499 139 20 0 chr1 78657351 78657912 -203535752 - MER34C LTR ERV1 -8 577 6 268 114 0 0 chr1 78657913 78657953 -203535711 - MER34C LTR ERV1 -545 40 1 3757 147 71 2 chr1 78658241 78658677 -203534987 - MER4E LTR ERV1 -100 679 184 221 0 0 33 chr1 78658677 78658707 -203534957 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3757 147 71 2 chr1 78658707 78658905 -203534759 - MER4E LTR ERV1 -595 184 1 2597 161 57 4 chr1 78659041 78659512 -203534152 - LTR29 LTR ERV1 0 622 127 421 240 31 21 chr1 78659730 78659826 -203533838 - LTR29-int LTR ERV1 -255 4681 4585 991 184 15 0 chr1 78659848 78660049 -203533615 - LTR49-int LTR ERV1 -542 5789 5586 203 0 0 36 chr1 78660049 78660077 -203533587 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 24056 174 20 30 chr1 78660077 78661569 -203532095 - L1PA10 LINE L1 -20 6463 4957 2087 146 3 0 chr1 78661569 78661877 -203531787 - AluSx SINE Alu -3 309 1 24056 174 20 30 chr1 78661877 78666801 -203526863 - L1PA10 LINE L1 -1526 4957 -16 1872 145 98 18 chr1 78666801 78666856 -203526808 - THE1B LTR MaLR 0 364 315 384 22 0 0 chr1 78666856 78666901 -203526763 + (CA)n Simple_repeat Simple_repeat 2 46 0 1872 145 98 18 chr1 78666901 78667182 -203526482 - THE1B LTR MaLR -49 315 1 11043 109 16 6 chr1 78667182 78668746 -203524918 - THE1B-int LTR MaLR 0 1580 1 2413 117 28 14 chr1 78668746 78669105 -203524559 - THE1B LTR MaLR 0 364 1 24056 174 20 30 chr1 78669105 78669205 -203524459 - L1PA10 LINE L1 -6382 101 1 7211 161 37 21 chr1 78669205 78669812 -203523852 - LTR49-int LTR ERV1 -739 5592 4996 588 131 93 0 chr1 78669812 78669919 -203523745 + L1PA16 LINE L1 6045 6161 -5 7211 161 37 21 chr1 78669919 78670791 -203522873 - LTR49-int LTR ERV1 -1335 4996 4089 1719 135 36 59 chr1 78670893 78671331 -203522333 - LTR49-int LTR ERV1 -2139 4192 3765 1154 167 22 31 chr1 78671335 78671562 -203522102 + THE1C LTR MaLR 151 375 0 252 120 0 40 chr1 78671563 78671613 -203522051 - LTR49-int LTR ERV1 -3909 4211 4164 866 175 43 102 chr1 78671615 78671940 -203521724 - LTR49-int LTR ERV1 -2636 3686 3380 484 214 138 21 chr1 78671946 78672091 -203521573 - MER34C LTR ERV1 -268 317 156 1348 259 21 74 chr1 78672134 78672605 -203521059 - LTR49-int LTR ERV1 -3701 2630 2185 194 227 40 40 chr1 78672795 78672870 -203520794 + L2 LINE L2 1632 1706 -1608 1669 126 86 22 chr1 78672872 78673141 -203520523 + AluSg SINE Alu 1 286 -24 242 316 82 10 chr1 78673159 78673257 -203520407 + L2 LINE L2 1700 1804 -1510 498 200 75 25 chr1 78673257 78673377 -203520287 + MLT1B LTR MaLR 1 126 -264 536 153 122 0 chr1 78673477 78673575 -203520089 - FLAM_C SINE Alu -33 110 1 446 374 114 0 chr1 78674300 78674519 -203519145 + MIR SINE MIR 4 247 -15 3389 84 29 10 chr1 78676621 78677108 -203516556 - L1PA13 LINE L1 0 6163 5668 1924 185 4 140 chr1 78677108 78677666 -203515998 + L1P LINE L1 4338 4819 -1327 1350 220 129 58 chr1 78677734 78678244 -203515420 + MER34B LTR ERV1 5 543 -22 392 262 160 49 chr1 78678817 78679042 -203514622 - MIR SINE MIR -12 250 1 5343 123 18 28 chr1 78679680 78680068 -203513596 + L1PA15 LINE L1 4218 4609 -1556 3811 150 30 58 chr1 78680068 78680876 -203512788 - LTR1 LTR ERV1 0 785 1 5343 123 18 28 chr1 78680876 78682445 -203511219 + L1PA15 LINE L1 4609 6159 -6 253 268 39 0 chr1 78683087 78683214 -203510450 + (TA)n Simple_repeat Simple_repeat 1 132 0 426 162 0 0 chr1 78683214 78683288 -203510376 + MADE1 DNA Mariner 2 75 -5 231 167 0 0 chr1 78683296 78683338 -203510326 + (CATA)n Simple_repeat Simple_repeat 3 44 0 624 333 57 8 chr1 78683566 78683950 -203509714 + L1ME4a LINE L1 5479 5881 -240 200 192 0 77 chr1 78684213 78684265 -203509399 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2266 108 0 0 chr1 78684294 78684591 -203509073 - AluSg SINE Alu -13 297 1 22 0 0 0 chr1 78684644 78684666 -203508998 + AT_rich Low_complexity Low_complexity 1 22 0 3433 106 52 6 chr1 78684667 78685207 -203508457 - L1MA1 LINE L1 -1 6301 5737 20072 175 21 13 chr1 78685207 78685945 -203507719 - L1 LINE L1 -2316 5249 4518 2350 101 0 3 chr1 78685945 78686252 -203507412 - AluSg SINE Alu -4 306 1 20072 175 21 13 chr1 78686252 78690613 -203503051 - L1 LINE L1 -3047 4518 109 7611 19 0 0 chr1 78690616 78691790 -203501874 - L1PA3 LINE L1 -1 6154 4973 7686 27 0 0 chr1 78691790 78692692 -203500972 + L1PA3 LINE L1 4058 4959 -1187 247 286 83 0 chr1 78692697 78692781 -203500883 - L1 LINE L1 -7457 108 18 386 111 0 22 chr1 78692907 78692997 -203500667 - MLT2A2 LTR ERVL 0 461 391 2610 132 29 20 chr1 78693021 78693430 -203500234 - MLT2A2 LTR ERVL -40 413 1 213 280 0 0 chr1 78693435 78693485 -203500179 + MIR SINE MIR 91 140 -68 1403 189 39 11 chr1 78693485 78693770 -203499894 + AluJo SINE Alu 17 309 -3 402 213 31 94 chr1 78695108 78695268 -203498396 + L1MDa LINE L1 1491 1640 -4900 1033 113 6 0 chr1 78695275 78695443 -203498221 - L1MA4A LINE L1 -7 6296 6128 4589 262 46 31 chr1 78695543 78697044 -203496620 - L1M2 LINE L1 -5239 1610 2 2365 263 94 17 chr1 78697075 78698859 -203494805 + L1MDa LINE L1 1657 3599 -2941 1385 220 25 89 chr1 78698867 78699304 -203494360 + MLT2D LTR ERVL 6 414 0 3118 269 48 18 chr1 78699308 78700895 -203492769 + L1MDa LINE L1 3599 5313 -1227 2661 260 63 13 chr1 78700904 78702034 -203491630 + L1M4 LINE L1 2337 3522 -2624 21 36 0 0 chr1 78702222 78702250 -203491414 + AT_rich Low_complexity Low_complexity 1 28 0 377 343 167 5 chr1 78702470 78702668 -203490996 + MIR SINE MIR 30 259 -3 1720 162 3 17 chr1 78702688 78702978 -203490686 + AluJb SINE Alu 1 286 -26 3666 220 132 19 chr1 78703213 78704386 -203489278 - Charlie1 DNA MER1_type 0 2761 1456 1401 244 78 19 chr1 78704474 78704847 -203488817 - Charlie1 DNA MER1_type -2366 395 1 185 274 226 0 chr1 78704853 78704937 -203488727 - L3 LINE CR1 -165 1412 1310 421 194 58 43 chr1 78706235 78706374 -203487290 + L1MC4 LINE L1 7491 7631 -411 601 264 38 48 chr1 78706395 78706710 -203486954 + L1MC4 LINE L1 7575 7886 -156 22 35 0 0 chr1 78706718 78706747 -203486917 + AT_rich Low_complexity Low_complexity 1 29 0 306 148 0 0 chr1 78706755 78706809 -203486855 + (TG)n Simple_repeat Simple_repeat 1 54 0 333 209 87 17 chr1 78706820 78706879 -203486785 + L1MC4 LINE L1 7918 7971 -71 354 23 0 0 chr1 78706879 78706922 -203486742 + (TG)n Simple_repeat Simple_repeat 2 44 0 333 209 87 17 chr1 78706922 78706977 -203486687 + L1MC4 LINE L1 7971 8040 -2 2337 300 62 50 chr1 78708929 78710820 -203482844 + L1MEc LINE L1 39 1963 -4433 1976 147 0 0 chr1 78710820 78711113 -203482551 + AluSx SINE Alu 1 293 -19 2337 300 62 50 chr1 78711113 78711520 -203482144 + L1MEc LINE L1 1963 2364 -4032 1771 178 78 91 chr1 78711525 78712052 -203481612 - MLT2B1 LTR ERVL 0 520 1 480 233 33 48 chr1 78712069 78712279 -203481385 + L1MEc LINE L1 2297 2503 -3712 1072 199 10 10 chr1 78712284 78712490 -203481174 + AluJo SINE Alu 85 290 -22 1600 237 105 36 chr1 78712491 78713346 -203480318 + L1MEc LINE L1 2509 3422 -2793 546 176 11 0 chr1 78713348 78713439 -203480225 + FLAM_A SINE Alu 1 92 -50 1380 84 6 0 chr1 78713541 78713720 -203479944 + AluSg/x SINE Alu 120 299 -11 250 309 36 24 chr1 78714423 78714507 -203479157 - L1MCc LINE L1 -5913 510 426 186 274 97 62 chr1 78714619 78714732 -203478932 - L2 LINE L2 -18 3295 3179 194 261 87 0 chr1 78714749 78714795 -203478869 - MER5B DNA MER1_type -126 52 3 1222 147 5 5 chr1 78714868 78715066 -203478598 + MLT1A1 LTR MaLR 6 203 -162 666 277 59 50 chr1 78715317 78715638 -203478026 - L1MCc LINE L1 -5450 973 650 288 341 61 18 chr1 78715658 78715822 -203477842 - L1MCc LINE L1 -5836 587 417 389 263 20 0 chr1 78715824 78715923 -203477741 - L1MCc LINE L1 -6050 373 273 5081 148 36 1 chr1 78715924 78717341 -203476323 + L1PA14 LINE L1 4692 6155 -6 405 263 110 13 chr1 78717430 78717666 -203475998 - L1MCc LINE L1 -6135 288 30 1934 165 0 7 chr1 78719255 78719558 -203474106 - AluSx SINE Alu -11 301 1 312 246 22 109 chr1 78720360 78720498 -203473166 + MIR SINE MIR 66 191 -71 2546 104 11 8 chr1 78720510 78720884 -203472780 + THE1C LTR MaLR 1 375 0 437 281 58 0 chr1 78721022 78721161 -203472503 + MER117 DNA MER1_type 2 148 -49 501 324 7 7 chr1 78721911 78722047 -203471617 - L2 LINE L2 0 3313 3178 10583 39 0 1 chr1 78722279 78723645 -203470019 - L1PA3 LINE L1 -1799 4347 2983 8538 35 0 0 chr1 78723645 78725454 -203468210 + L1PA3 LINE L1 4349 6155 0 195 69 0 0 chr1 78725458 78725487 -203468177 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 778 274 112 23 chr1 78725822 78726042 -203467622 + LTR16A LTR ERVL 164 412 -38 1018 224 162 15 chr1 78726042 78726200 -203467464 + MLT1B LTR MaLR 1 134 -256 252 0 0 0 chr1 78726200 78726228 -203467436 + (TC)n Simple_repeat Simple_repeat 1 28 0 1018 224 162 15 chr1 78726228 78726409 -203467255 + MLT1B LTR MaLR 134 390 0 778 274 112 23 chr1 78726409 78726447 -203467217 + LTR16A LTR ERVL 412 445 -5 233 336 104 83 chr1 78727348 78727589 -203466075 + L2 LINE L2 2941 3186 -86 1963 111 4 4 chr1 78727920 78728199 -203465465 - AluSg SINE Alu -31 279 1 1048 221 95 45 chr1 78728307 78728665 -203464999 + L1ME1 LINE L1 5786 6161 -5 203 312 13 39 chr1 78728909 78728986 -203464678 + L2 LINE L2 3237 3311 -2 208 189 0 0 chr1 78728990 78729027 -203464637 + L2 LINE L2 3018 3054 -218 25170 133 14 40 chr1 78729094 78733454 -203460210 - L1PA8 LINE L1 -5 6482 2300 2235 117 0 3 chr1 78733454 78733763 -203459901 + AluY SINE Alu 2 309 -2 25170 133 14 40 chr1 78733763 78735995 -203457669 - L1PA8 LINE L1 -4187 2300 10 1953 231 32 45 chr1 78736118 78736746 -203456918 + MLT1E3 LTR MaLR 1 620 -4 329 271 10 10 chr1 78736821 78736917 -203456747 + GA-rich Low_complexity Low_complexity 3 98 0 883 229 6 0 chr1 78736935 78737110 -203456554 - MER5B DNA MER1_type -1 177 2 248 317 49 16 chr1 78737632 78737755 -203455909 + MIR SINE MIR 48 174 -88 3902 166 34 4 chr1 78737767 78738452 -203455212 + MER39 LTR ERV1 3 707 0 315 0 0 0 chr1 78738496 78738531 -203455133 + (TG)n Simple_repeat Simple_repeat 2 36 0 328 313 12 61 chr1 78738844 78738919 -203454745 - MIR SINE MIR -70 192 128 1980 70 47 44 chr1 78738919 78739217 -203454447 + AluY SINE Alu 1 299 -12 328 313 12 61 chr1 78739217 78739304 -203454360 - MIR SINE MIR -134 128 38 752 255 27 0 chr1 78739620 78739804 -203453860 - MER5A DNA MER1_type 0 189 1 290 307 30 0 chr1 78739875 78739976 -203453688 + MIR SINE MIR 3 106 -156 440 35 17 0 chr1 78739998 78740056 -203453608 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 946 289 114 2 chr1 78740138 78740543 -203453121 + LTR16A LTR ERVL 1 450 0 211 341 158 6 chr1 78740627 78740791 -203452873 - MIR SINE MIR -72 190 2 21 36 0 0 chr1 78740796 78740824 -203452840 + AT_rich Low_complexity Low_complexity 1 28 0 310 289 16 23 chr1 78741895 78742023 -203451641 + CT-rich Low_complexity Low_complexity 1 127 0 370 267 40 40 chr1 78742092 78742242 -203451422 + MIR SINE MIR 56 205 -57 2123 127 7 0 chr1 78742346 78742654 -203451010 - AluSq SINE Alu -2 311 2 346 265 36 108 chr1 78742814 78742980 -203450684 - MER5B DNA MER1_type 0 178 25 201 279 33 33 chr1 78742927 78742988 -203450676 + MER5A DNA MER1_type 113 173 -16 * 237 244 0 85 chr1 78743185 78743267 -203450397 + MIR SINE MIR 119 193 -69 252 0 0 0 chr1 78743858 78743886 -203449778 + (TTA)n Simple_repeat Simple_repeat 3 30 0 284 288 50 100 chr1 78744153 78744313 -203449351 + MER5A DNA MER1_type 38 189 0 483 224 0 82 chr1 78744157 78744291 -203449373 - MER5B DNA MER1_type -30 148 26 450 313 12 24 chr1 78744321 78744487 -203449177 + MER5A DNA MER1_type 1 164 -25 236 312 17 69 chr1 78744732 78744905 -203448759 + MIR SINE MIR 20 183 -79 189 172 47 0 chr1 78744958 78745022 -203448642 + GA-rich Low_complexity Low_complexity 2 68 0 229 231 58 0 chr1 78746265 78746317 -203447347 + MER5A DNA MER1_type 21 75 -114 302 294 62 68 chr1 78747013 78747159 -203446505 + MIR3 SINE MIR 60 204 -4 459 336 21 7 chr1 78747308 78747448 -203446216 - MIR SINE MIR -114 148 7 477 254 0 41 chr1 78748567 78748689 -203444975 + L2 LINE L2 3197 3313 0 231 266 31 0 chr1 78749191 78749255 -203444409 + L2 LINE L2 3248 3313 0 630 280 45 5 chr1 78749566 78749766 -203443898 + MLT1H LTR MaLR 2 209 -340 288 208 83 0 chr1 78749966 78750038 -203443626 + MLT1F1 LTR MaLR 487 564 -3 275 180 33 0 chr1 78750818 78750879 -203442785 - MER103 DNA DNA -48 118 56 197 262 16 16 chr1 78751022 78751083 -203442581 - MIR SINE MIR -65 143 83 679 301 96 13 chr1 78751570 78751809 -203441855 + MIR SINE MIR 2 260 -2 267 320 117 66 chr1 78751850 78752106 -203441558 - L2 LINE L2 0 3272 3004 199 301 73 24 chr1 78752306 78752429 -203441235 - L2 LINE L2 -459 2855 2727 8617 155 47 8 chr1 78752451 78754506 -203439158 - L1PA3 LINE L1 0 6155 4015 191 280 20 0 chr1 78754764 78754814 -203438850 + L2 LINE L2 3221 3271 -1 628 145 145 0 chr1 78754941 78755100 -203438564 - MER53 DNA DNA -4 185 4 191 289 356 0 chr1 78755458 78755548 -203438116 - L2 LINE L2 -4 3309 3188 197 122 49 0 chr1 78755684 78755725 -203437939 + (CATA)n Simple_repeat Simple_repeat 1 43 0 448 301 40 17 chr1 78756473 78756649 -203437015 - MIR SINE MIR -74 188 9 341 48 0 0 chr1 78756854 78756896 -203436768 - THE1A LTR MaLR 0 355 314 2741 13 0 0 chr1 78756896 78757196 -203436468 + AluYb8 SINE Alu 1 300 -18 404 204 54 0 chr1 78757296 78757389 -203436275 + MER39B LTR ERV1 138 235 -418 1921 139 36 0 chr1 78757390 78757722 -203435942 + MER39 LTR ERV1 340 683 -24 207 0 0 0 chr1 78757847 78757870 -203435794 + (CAA)n Simple_repeat Simple_repeat 1 23 0 402 240 189 25 chr1 78758084 78758280 -203435384 + LOR1-int LTR ERV1 366 593 -5738 276 91 0 0 chr1 78758283 78758327 -203435337 + (T)n Simple_repeat Simple_repeat 1 44 0 1053 170 41 162 chr1 78758368 78758910 -203434754 + LOR1-int LTR ERV1 1373 1848 -4483 431 158 26 0 chr1 78758932 78759005 -203434659 + MER31A LTR ERV1 11 85 -400 307 125 0 0 chr1 78759005 78759053 -203434611 - MER54B LTR ERVL 0 793 746 * 448 213 57 25 chr1 78759039 78759161 -203434503 - MER54A LTR ERVL -470 342 49 362 279 0 18 chr1 78759228 78759339 -203434325 + LOR1-int LTR ERV1 765 873 -4063 414 184 31 10 chr1 78759690 78759788 -203433876 + LOR1-int LTR ERV1 2023 2122 -2749 257 258 167 0 chr1 78760281 78760401 -203433263 + LOR1-int LTR ERV1 1554 1693 -6427 1109 151 9 36 chr1 78760423 78760520 -203433144 - Tigger1 DNA MER2_type 0 2418 2320 3939 122 42 10 chr1 78760520 78761144 -203432520 + LTR9B LTR ERV1 1 644 0 1109 151 9 36 chr1 78761144 78761271 -203432393 - Tigger1 DNA MER2_type -98 2320 2200 688 200 26 13 chr1 78761258 78761413 -203432251 - Tigger1 DNA MER2_type -2261 157 1 * 21 0 0 0 chr1 78761474 78761495 -203432169 + AT_rich Low_complexity Low_complexity 1 21 0 400 182 37 90 chr1 78761510 78761723 -203431941 + LOR1-int LTR ERV1 3176 4269 -1500 583 110 0 11 chr1 78761785 78761876 -203431788 + AluS SINE Alu 8 97 -216 866 168 6 25 chr1 78761983 78762144 -203431520 + AluSp SINE Alu 139 296 -17 1706 188 3 20 chr1 78762191 78762495 -203431169 - AluJb SINE Alu -13 299 1 23 0 0 0 chr1 78762498 78762521 -203431143 + AT_rich Low_complexity Low_complexity 1 23 0 6184 190 84 81 chr1 78762521 78763385 -203430279 + LOR1-int LTR ERV1 2589 3449 -1487 1891 149 17 20 chr1 78763385 78763680 -203429984 + AluSx SINE Alu 5 298 -14 6184 190 84 81 chr1 78763680 78763882 -203429782 + LOR1-int LTR ERV1 3449 3649 -1287 1822 134 99 3 chr1 78763882 78764165 -203429499 - AluSq SINE Alu -3 310 1 6184 190 84 81 chr1 78764165 78765275 -203428389 + LOR1-int LTR ERV1 3649 4772 -164 1923 152 21 30 chr1 78765420 78765843 -203427821 + MER39 LTR ERV1 223 705 -2 39853 58 2 1 chr1 78765978 78772118 -203421546 - L1PA5 LINE L1 0 6154 11 21 0 0 0 chr1 78772231 78772252 -203421412 + AT_rich Low_complexity Low_complexity 1 21 0 236 164 36 0 chr1 78772328 78772383 -203421281 + (TAA)n Simple_repeat Simple_repeat 1 57 0 463 298 42 5 chr1 78772431 78772572 -203421092 - MIR SINE MIR -63 145 34 319 329 65 35 chr1 78772607 78772777 -203420887 + L2 LINE L2 2885 3059 -213 225 291 39 79 chr1 78774102 78774237 -203419427 + MER117 DNA MER1_type 2 128 -69 1187 165 22 22 chr1 78774237 78774461 -203419203 - MER58A DNA MER1_type 0 224 1 225 291 39 79 chr1 78774461 78774528 -203419136 + MER117 DNA MER1_type 128 196 -1 451 299 56 0 chr1 78774639 78774783 -203418881 + MIR SINE MIR 15 166 -96 1915 141 24 3 chr1 78775144 78775434 -203418230 - AluSx SINE Alu -15 297 2 22 0 0 0 chr1 78775499 78775521 -203418143 + AT_rich Low_complexity Low_complexity 1 22 0 1705 92 0 13 chr1 78777105 78777332 -203416332 + AluY SINE Alu 74 297 -14 6374 16 0 1 chr1 78777917 78778683 -203414981 + L1PA2 LINE L1 5417 6155 0 474 18 0 0 chr1 78779750 78779805 -203413859 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr1 78780332 78780353 -203413311 + AT_rich Low_complexity Low_complexity 1 21 0 364 289 46 66 chr1 78780555 78780752 -203412912 + MLT1K LTR MaLR 91 283 -305 237 208 56 0 chr1 78780894 78780966 -203412698 + MLT1L LTR MaLR 536 611 -4 2229 111 3 3 chr1 78781102 78781408 -203412256 - AluSc SINE Alu -3 306 1 296 255 85 32 chr1 78783258 78783352 -203410312 + MIR SINE MIR 82 180 -82 296 266 21 104 chr1 78783585 78783777 -203409887 + MER5B DNA MER1_type 1 176 -2 189 0 0 0 chr1 78783902 78783923 -203409741 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 40630 36 35 17 chr1 78783927 78786423 -203407241 - L1PA2 LINE L1 -6 6149 3700 229 244 12 58 chr1 78786423 78786509 -203407155 + MSTB2 LTR MaLR 136 217 -240 40630 36 35 17 chr1 78786509 78789961 -203403703 - L1PA2 LINE L1 -2455 3700 3 370 333 53 63 chr1 78789968 78790157 -203403507 + MER5A DNA MER1_type 3 189 0 610 295 65 85 chr1 78791719 78792072 -203401592 - LTR33A LTR ERVL -177 346 1 1282 297 40 33 chr1 78792088 78792542 -203401122 - LTR16C LTR ERVL 0 491 35 245 186 62 41 chr1 78792759 78792856 -203400808 - MER20B DNA MER1_type -6 777 679 930 200 72 128 chr1 78792860 78793235 -203400429 + MLT1A2 LTR MaLR 5 358 -16 498 231 88 19 chr1 78793231 78793391 -203400273 - MER20B DNA MER1_type -98 685 515 * 205 246 31 0 chr1 78793658 78793723 -203399941 + L3 LINE CR1 1178 1244 -333 262 286 0 0 chr1 78793723 78793786 -203399878 - MIR SINE MIR -125 137 75 640 269 92 51 chr1 78793959 78794275 -203399389 - MER20B DNA MER1_type -453 330 2 641 329 228 2 chr1 78794519 78795024 -203398640 + L3 LINE CR1 626 1244 -333 252 258 16 0 chr1 78795024 78795086 -203398578 - MIR SINE MIR -125 137 75 458 309 56 22 chr1 78795165 78795343 -203398321 - MLT1J2 LTR MaLR -1 449 266 1853 161 18 47 chr1 78795580 78795965 -203397699 - THE1C LTR MaLR -1 374 1 422 284 290 18 chr1 78796717 78797188 -203396476 + L2 LINE L2 2666 3253 -60 23 68 0 0 chr1 78798716 78798760 -203394904 + AT_rich Low_complexity Low_complexity 1 44 0 202 322 118 40 chr1 78798852 78799004 -203394660 + L3 LINE CR1 1394 1557 -20 2448 72 0 0 chr1 78799760 78800066 -203393598 - AluY SINE Alu -5 306 1 1368 210 69 69 chr1 78800171 78800637 -203393027 - MER31B LTR ERV1 0 466 1 274 287 111 9 chr1 78800962 78801070 -203392594 - MIR SINE MIR -68 140 22 290 250 11 0 chr1 78802581 78802673 -203390991 + (TA)n Simple_repeat Simple_repeat 2 94 0 240 337 219 6 chr1 78802731 78802909 -203390755 + L3 LINE CR1 1240 1455 -122 214 358 0 0 chr1 78802888 78802955 -203390709 + L2 LINE L2 3204 3270 -2 * 185 241 0 56 chr1 78803359 78803413 -203390251 - MIR3 SINE MIR -14 194 144 2199 119 0 3 chr1 78803929 78804231 -203389433 - AluSx SINE Alu -9 303 3 566 299 151 14 chr1 78804936 78805354 -203388310 - MER113 DNA MER1_type? -46 475 1 269 135 19 0 chr1 78805688 78805740 -203387924 + GA-rich Low_complexity Low_complexity 4 56 0 231 242 15 15 chr1 78806424 78806490 -203387174 + GA-rich Low_complexity Low_complexity 3 68 0 180 77 0 0 chr1 78806966 78806992 -203386672 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 815 230 77 85 chr1 78807439 78808017 -203385647 - MER76 LTR ERV -39 649 12 186 172 0 0 chr1 78809723 78809752 -203383912 + MIR SINE MIR 4 32 -230 4009 256 85 80 chr1 78809855 78811626 -203382038 + L1MEc LINE L1 92 1852 -4544 6958 60 5 0 chr1 78811626 78812617 -203381047 + L1PA7 LINE L1 5158 6149 -5 4009 256 85 80 chr1 78812617 78812726 -203380938 + L1MEc LINE L1 1852 1959 -4437 4852 149 12 13 chr1 78812726 78813254 -203380410 + L1MC1 LINE L1 5492 6020 -313 2133 141 0 0 chr1 78813254 78813558 -203380106 - AluSx SINE Alu -8 304 1 4852 149 12 13 chr1 78813558 78813867 -203379797 + L1MC1 LINE L1 6020 6328 -5 4009 256 85 80 chr1 78813867 78814222 -203379442 + L1MEc LINE L1 1959 2340 -4056 369 231 39 54 chr1 78814250 78814380 -203379284 + L1MEc LINE L1 3591 3718 -2497 293 342 9 18 chr1 78815118 78815229 -203378435 + L2 LINE L2 2211 2320 -994 408 281 113 27 chr1 78815232 78815417 -203378247 - MIR SINE MIR -27 235 35 201 312 0 26 chr1 78816315 78816392 -203377272 - MIR SINE MIR -10 252 178 214 327 95 48 chr1 78816448 78816616 -203377048 - MIR SINE MIR -86 176 1 273 345 81 29 chr1 78816658 78816850 -203376814 + MIR SINE MIR 16 209 -53 230 345 24 0 chr1 78816905 78816989 -203376675 + L2 LINE L2 3226 3311 -2 270 254 0 16 chr1 78817881 78817944 -203375720 + MLT1H LTR MaLR 133 194 -355 446 236 83 19 chr1 78817956 78818113 -203375551 + MER53 DNA DNA 1 167 -22 22 0 0 0 chr1 78818527 78818549 -203375115 + AT_rich Low_complexity Low_complexity 1 22 0 400 263 146 58 chr1 78820062 78820221 -203373443 + MIR SINE MIR 2 190 -72 1908 157 0 10 chr1 78820221 78820521 -203373143 - AluJb SINE Alu -13 299 3 400 263 146 58 chr1 78820521 78820601 -203373063 + MIR SINE MIR 190 262 0 370 283 54 94 chr1 78820651 78820874 -203372790 + MIR SINE MIR 49 262 0 1154 234 155 39 chr1 78821053 78821174 -203372490 - Charlie7 DNA MER1_type -63 2549 2443 2152 113 3 0 chr1 78821174 78821475 -203372189 + AluSg SINE Alu 3 304 -6 1154 234 155 39 chr1 78821475 78822064 -203371600 - Charlie7 DNA MER1_type -169 2443 1757 11855 238 76 29 chr1 78822064 78828614 -203365050 - L1PB4 LINE L1 -9 6849 64 573 212 54 38 chr1 78828817 78829001 -203364663 - Charlie7 DNA MER1_type -2425 187 1 711 221 70 12 chr1 78829212 78829384 -203364280 - MER3 DNA MER1_type 0 209 28 23 0 0 0 chr1 78829516 78829539 -203364125 + AT_rich Low_complexity Low_complexity 1 23 0 271 327 37 9 chr1 78829592 78829699 -203363965 - MIR SINE MIR 0 262 153 1109 230 64 28 chr1 78829815 78830172 -203363492 + MER96B DNA MER1_type? 3 372 -45 184 80 0 0 chr1 78830488 78830513 -203363151 + L2 LINE L2 3269 3293 -20 350 235 76 42 chr1 78830845 78830964 -203362700 + MIR SINE MIR 19 141 -67 435 289 136 33 chr1 78831619 78832047 -203361617 - MLT1H LTR MaLR -2 553 16 234 295 63 44 chr1 78832277 78832548 -203361116 + MLT1-int LTR MaLR 261 536 -835 571 281 95 7 chr1 78833497 78833703 -203359961 + MLT1H1 LTR MaLR 44 244 -311 1598 264 33 53 chr1 78833861 78834466 -203359198 - MLT1E LTR MaLR 0 593 1 364 279 12 73 chr1 78835269 78835434 -203358230 - MIR SINE MIR -106 156 2 305 371 16 92 chr1 78836146 78836569 -203357095 - L2 LINE L2 -52 3220 2830 2511 58 0 7 chr1 78837165 78837475 -203356189 + AluSp SINE Alu 1 308 -5 350 341 32 0 chr1 78837506 78837632 -203356032 - MIR SINE MIR -131 131 2 227 410 68 16 chr1 78837949 78838198 -203355466 - L2 LINE L2 -420 2894 2633 2605 187 12 18 chr1 78838253 78838750 -203354914 + ERVL LTR ERVL 3788 4281 -1483 790 264 45 93 chr1 78838806 78839335 -203354329 + MER34 LTR ERV1 18 636 -17 2014 155 29 9 chr1 78839341 78839689 -203353975 + THE1A LTR MaLR 1 355 0 11178 102 14 1 chr1 78839689 78841248 -203352416 + THE1A-int LTR MaLR 1 1580 0 2131 102 37 34 chr1 78841248 78841464 -203352200 + THE1A LTR MaLR 1 220 -135 180 0 0 0 chr1 78841464 78841484 -203352180 + (CCA)n Simple_repeat Simple_repeat 3 22 0 2131 102 37 34 chr1 78841484 78841621 -203352043 + THE1A LTR MaLR 220 355 0 1395 209 77 24 chr1 78841645 78842018 -203351646 + MLT2B1 LTR ERVL 30 484 -36 396 0 0 0 chr1 78842018 78842062 -203351602 + (TA)n Simple_repeat Simple_repeat 2 45 0 1395 209 77 24 chr1 78842062 78842102 -203351562 + MLT2B1 LTR ERVL 484 520 0 2145 183 110 68 chr1 78842802 78843392 -203350272 - LTR29 LTR ERV1 -5 617 3 1758 222 14 3 chr1 78843512 78843873 -203349791 + MLT1A1 LTR MaLR 1 365 0 1870 158 46 8 chr1 78843911 78844279 -203349385 - L1MB3 LINE L1 -2 6181 5800 3154 91 8 12 chr1 78844279 78844761 -203348903 - L1M4c LINE L1 -4017 2367 1888 1239 154 0 27 chr1 78844769 78844990 -203348674 - L1M4c LINE L1 -6149 235 21 1661 252 43 75 chr1 78845236 78845796 -203347868 + MER77 LTR ERV1 54 595 -10 2234 76 7 3 chr1 78845951 78846253 -203347411 + AluY SINE Alu 1 303 -8 560 301 109 72 chr1 78846307 78846866 -203346798 - L1M4 LINE L1 -1444 4702 4123 1406 199 89 33 chr1 78846907 78847244 -203346420 + MLT1A1 LTR MaLR 10 365 0 336 103 29 15 chr1 78847448 78847516 -203346148 + (TA)n Simple_repeat Simple_repeat 1 69 0 550 310 66 92 chr1 78848927 78849717 -203343947 - HAL1 LINE L1 -860 1647 879 2224 120 0 0 chr1 78849726 78850035 -203343629 - AluSx SINE Alu -3 309 1 2270 157 2 59 chr1 78851006 78851432 -203342232 - MLT2D LTR ERVL -10 404 3 233 288 0 0 chr1 78852304 78852363 -203341301 - L2 LINE L2 0 3313 3255 597 352 75 4 chr1 78852635 78852902 -203340762 - MLT1I LTR MaLR -7 402 117 271 348 37 7 chr1 78853582 78853717 -203339947 - MIR SINE MIR -50 212 74 24 85 0 0 chr1 78853996 78854055 -203339609 + AT_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr1 78854944 78854966 -203338698 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr1 78855436 78855469 -203338195 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr1 78857150 78857177 -203336487 + AT_rich Low_complexity Low_complexity 1 27 0 257 294 87 56 chr1 78857305 78857591 -203336073 + HAL1 LINE L1 1182 1476 -1031 214 104 21 21 chr1 78857699 78857747 -203335917 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 315 49 0 0 chr1 78857747 78857788 -203335876 + (CATA)n Simple_repeat Simple_repeat 2 42 0 386 231 103 43 chr1 78857825 78857942 -203335722 + MER94 DNA DNA 1 124 -10 802 270 36 124 chr1 78858472 78859229 -203334435 - MER77 LTR ERV1 -4 601 54 2972 41 3 0 chr1 78859372 78859734 -203333930 - L1PA5 LINE L1 -4 6150 5788 24 0 0 0 chr1 78860304 78860328 -203333336 + AT_rich Low_complexity Low_complexity 1 24 0 240 59 0 0 chr1 78860389 78860423 -203333241 + (TATAA)n Simple_repeat Simple_repeat 5 38 0 406 322 128 14 chr1 78860505 78860856 -203332808 + L1M4 LINE L1 2774 3164 -2982 285 235 0 0 chr1 78862142 78862227 -203331437 + A-rich Low_complexity Low_complexity 1 85 0 838 76 30 5 chr1 78862681 78862879 -203330785 - AluY SINE Alu -10 301 1 415 113 0 0 chr1 78863226 78863288 -203330376 - AluS SINE Alu -18 294 233 1423 141 9 0 chr1 78863424 78863644 -203330020 - AluSg SINE Alu -88 222 1 201 393 41 0 chr1 78863974 78864119 -203329545 + L2 LINE L2 2257 2407 -907 456 183 8 0 chr1 78864274 78864372 -203329292 - HsTC2 DNA Tc2 -1 1897 1795 281 304 27 18 chr1 78864364 78864476 -203329188 - HsTC2 DNA Tc2 -282 1616 1328 * 258 149 60 15 chr1 78864548 78864615 -203329049 - HsTC2 DNA Tc2 -1828 70 1 612 333 62 62 chr1 78864627 78865299 -203328365 + L2 LINE L2 2563 3271 -1 199 247 86 86 chr1 78865308 78865401 -203328263 + MIR SINE MIR 170 262 0 401 276 69 14 chr1 78866307 78866452 -203327212 + MLT1H LTR MaLR 8 160 -389 251 299 56 42 chr1 78866587 78866731 -203326933 + MLT1H LTR MaLR 404 549 0 524 250 99 6 chr1 78866915 78867087 -203326577 + MIR SINE MIR 75 262 0 29 28 0 0 chr1 78867098 78867134 -203326530 + AT_rich Low_complexity Low_complexity 1 36 0 493 275 36 48 chr1 78867604 78867771 -203325893 + L2 LINE L2 3149 3313 0 26 0 0 0 chr1 78868145 78868171 -203325493 + AT_rich Low_complexity Low_complexity 1 26 0 335 173 27 13 chr1 78869011 78869086 -203324578 - MLT1K LTR MaLR -2 586 511 252 291 18 45 chr1 78869086 78869121 -203324543 - LTR67 LTR ERVL -2 555 449 226 299 155 21 chr1 78870118 78870305 -203323359 - LTR67 LTR ERVL -8 549 338 192 368 86 0 chr1 78871534 78871651 -203322013 + L2 LINE L2 3186 3312 -1 268 304 35 17 chr1 78872043 78872158 -203321506 - MER117 DNA MER1_type -80 117 1 704 133 13 26 chr1 78872608 78872759 -203320905 - L1MA4A LINE L1 -2 6301 6153 278 230 32 32 chr1 78872856 78872982 -203320682 + (TA)n Simple_repeat Simple_repeat 1 126 0 467 156 0 11 chr1 78872997 78873087 -203320577 + GA-rich Low_complexity Low_complexity 4 92 0 301 268 0 52 chr1 78873306 78873403 -203320261 + MLT1J2 LTR MaLR 359 450 0 11052 139 13 13 chr1 78873827 78875642 -203318022 - Tigger1 DNA MER2_type 0 2418 604 2436 168 10 5 chr1 78875636 78876048 -203317616 - Tigger1 DNA MER2_type -2004 414 1 * 1973 141 23 3 chr1 78876433 78876732 -203316932 + AluSx SINE Alu 1 305 -7 267 292 77 23 chr1 78876885 78877015 -203316649 + L2 LINE L2 3175 3311 -2 380 344 50 0 chr1 78877705 78877865 -203315799 - MIR SINE MIR 0 262 95 399 341 122 35 chr1 78877889 78878340 -203315324 - L2 LINE L2 0 3313 2824 21 71 0 0 chr1 78878499 78878541 -203315123 + AT_rich Low_complexity Low_complexity 1 42 0 430 274 158 6 chr1 78878848 78879012 -203314652 + MIR SINE MIR 45 233 -29 592 266 8 0 chr1 78879451 78879579 -203314085 + MER63A DNA MER1_type 80 208 -2 201 74 0 0 chr1 78880180 78880207 -203313457 + (T)n Simple_repeat Simple_repeat 1 27 0 2074 199 16 21 chr1 78880527 78880707 -203312957 + Tigger2a DNA MER2_type 2 181 -2527 1378 189 3 85 chr1 78880707 78880854 -203312810 + AluJo SINE Alu 2 113 -199 2808 13 3 0 chr1 78880854 78881164 -203312500 + AluYa5 SINE Alu 1 311 0 1378 189 3 85 chr1 78881164 78881322 -203312342 + AluJo SINE Alu 113 282 -30 2074 199 16 21 chr1 78881322 78881573 -203312091 + Tigger2a DNA MER2_type 181 431 -3 275 319 0 33 chr1 78881729 78881820 -203311844 - L2 LINE L2 -1 3271 3184 392 251 146 23 chr1 78881851 78881957 -203311707 + MIR SINE MIR 61 153 -109 3044 180 10 86 chr1 78881957 78882551 -203311113 - MER67C LTR ERV1 0 710 185 2740 32 0 0 chr1 78882551 78882862 -203310802 - AluY SINE Alu 0 311 1 3044 180 10 86 chr1 78882862 78883035 -203310629 - MER67C LTR ERV1 -525 185 1 392 251 146 23 chr1 78883035 78883099 -203310565 + MIR SINE MIR 153 252 -10 301 313 134 19 chr1 78883493 78883707 -203309957 + MIR SINE MIR 48 261 -1 180 0 0 0 chr1 78885347 78885367 -203308297 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 2488 76 3 0 chr1 78886359 78886689 -203306975 - L1PA7 LINE L1 -232 5922 5592 1718 42 37 0 chr1 78886689 78886904 -203306760 + L1PA7 LINE L1 5930 6153 -1 378 338 35 14 chr1 78887846 78887991 -203305673 + MIR SINE MIR 3 150 -112 329 254 119 25 chr1 78888584 78888702 -203304962 + MIR SINE MIR 113 241 -21 459 313 80 6 chr1 78889359 78889535 -203304129 - MIR SINE MIR -69 193 5 2065 47 0 0 chr1 78889846 78890081 -203303583 - AluY SINE Alu -76 235 1 269 214 39 39 chr1 78890914 78891092 -203302572 + (TTTAA)n Simple_repeat Simple_repeat 1 178 0 * 270 220 34 40 chr1 78890969 78891146 -203302518 + T-rich Low_complexity Low_complexity 1 176 0 1522 174 35 35 chr1 78891199 78891487 -203302177 - AluJo SINE Alu -8 304 17 406 361 109 15 chr1 78892361 78892801 -203300863 + L2 LINE L2 2564 3035 -237 223 306 69 0 chr1 78892896 78892968 -203300696 + L2 LINE L2 3191 3267 -5 2175 288 88 41 chr1 78893165 78894601 -203299063 - L2 LINE L2 -18 3295 1786 27 0 0 0 chr1 78894645 78894672 -203298992 + AT_rich Low_complexity Low_complexity 1 27 0 399 145 0 0 chr1 78894973 78895042 -203298622 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 1877 129 52 7 chr1 78895559 78895845 -203297819 - AluSg SINE Alu -10 300 2 536 179 98 0 chr1 78897447 78897559 -203296105 + Charlie5 DNA MER1_type 2 124 -2488 981 169 82 57 chr1 78897568 78897934 -203295730 + Charlie5 DNA MER1_type 2243 2617 0 221 342 44 9 chr1 78898174 78898288 -203295376 - MIR3 SINE MIR -83 125 8 231 36 0 0 chr1 78899334 78899362 -203294302 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 220 349 60 36 chr1 78899859 78900025 -203293639 + L2 LINE L2 2853 3022 -250 286 252 234 9 chr1 78900189 78900296 -203293368 + L2 LINE L2 3142 3272 0 203 390 0 0 chr1 78900313 78900390 -203293274 + L2 LINE L2 2730 2806 -508 185 204 31 10 chr1 78902368 78902466 -203291198 + (TA)n Simple_repeat Simple_repeat 1 100 0 261 237 0 0 chr1 78903190 78903249 -203290415 + MIR SINE MIR 95 153 -109 234 0 0 0 chr1 78903567 78903593 -203290071 + (TAA)n Simple_repeat Simple_repeat 3 28 0 185 412 34 14 chr1 78904204 78904352 -203289312 - L2 LINE L2 -197 3075 2925 293 261 0 0 chr1 78905118 78905183 -203288481 + MIR SINE MIR 74 138 -70 454 312 9 1 chr1 78905203 78905334 -203288330 + MIR SINE MIR 20 150 -65 252 340 86 5 chr1 78905375 78905584 -203288080 + L1M4 LINE L1 5014 5239 -907 328 234 177 16 chr1 78905806 78905930 -203287734 + MIR SINE MIR 119 262 0 600 93 0 0 chr1 78907590 78907687 -203285977 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 1276 213 111 9 chr1 78907826 78907901 -203285763 - LTR52 LTR ERVL -2 419 353 342 0 0 0 chr1 78907901 78907939 -203285725 + (CA)n Simple_repeat Simple_repeat 2 39 0 1276 213 111 9 chr1 78907939 78908178 -203285486 - LTR52 LTR ERVL -68 353 73 1119 292 76 36 chr1 78908223 78908695 -203284969 - L2 LINE L2 -546 2768 2278 1554 212 45 9 chr1 78908792 78908867 -203284797 - L1P LINE L1 -755 5391 5320 2212 77 4 0 chr1 78908867 78909158 -203284506 - AluY SINE Alu 0 311 20 279 0 0 0 chr1 78909158 78909189 -203284475 + (TTA)n Simple_repeat Simple_repeat 2 32 0 2130 110 0 0 chr1 78909189 78909470 -203284194 - AluSc SINE Alu -28 281 1 1554 212 45 9 chr1 78909470 78909816 -203283848 - L1P LINE L1 -825 5321 4953 * 4183 107 107 13 chr1 78909813 78910523 -203283141 + L1PA16 LINE L1 5390 6166 0 2562 40 0 10 chr1 78911363 78911666 -203281998 + AluY SINE Alu 1 300 -11 219 306 44 105 chr1 78911782 78912030 -203281634 + L2 LINE L2 3000 3232 -40 1989 130 0 13 chr1 78912137 78912436 -203281228 - AluSq SINE Alu -18 295 1 1757 164 93 14 chr1 78912708 78913073 -203280591 + MSTD LTR MaLR 3 396 0 1051 73 5 0 chr1 78913384 78913530 -203280134 + L1PA6 LINE L1 5825 5976 -178 1641 172 19 101 chr1 78913858 78914283 -203279381 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr1 78915268 78915289 -203278375 + AT_rich Low_complexity Low_complexity 1 21 0 356 301 171 74 chr1 78915303 78915519 -203278145 - MIR SINE MIR -13 249 13 366 302 22 29 chr1 78917210 78917349 -203276315 - MIR SINE MIR -4 258 121 28 0 0 0 chr1 78917442 78917470 -203276194 + AT_rich Low_complexity Low_complexity 1 28 0 366 273 169 7 chr1 78917548 78917702 -203275962 - Charlie8 DNA MER1_type -2131 286 108 373 311 68 0 chr1 78919065 78919213 -203274451 - MIR SINE MIR -56 206 49 212 267 0 67 chr1 78919357 78919432 -203274232 + MIR SINE MIR 128 197 -65 2150 77 0 4 chr1 78919760 78920032 -203273632 - AluY SINE Alu -40 271 1 243 443 16 10 chr1 78920742 78920934 -203272730 + L2 LINE L2 2869 3061 -211 768 266 102 4 chr1 78922097 78922323 -203271341 + MIR SINE MIR 7 254 -8 954 138 0 46 chr1 78923734 78923930 -203269734 - MER53 DNA DNA -2 187 1 6734 133 54 13 chr1 78924068 78925250 -203268414 + Tigger3b DNA MER2_type 1 1231 0 1938 126 0 14 chr1 78925439 78925716 -203267948 + AluSx SINE Alu 31 303 -9 26 30 0 0 chr1 78927692 78927725 -203265939 + AT_rich Low_complexity Low_complexity 1 33 0 352 284 165 16 chr1 78929115 78929242 -203264422 + L2 LINE L2 3167 3312 -1 362 325 59 35 chr1 78929967 78930222 -203263442 - MIR SINE MIR 0 262 2 290 114 0 0 chr1 78930655 78930699 -203262965 - L1PA13 LINE L1 -19 6144 6101 * 2469 92 14 0 chr1 78930697 78931043 -203262621 + L1PA12 LINE L1 5734 6084 -84 22 0 0 0 chr1 78931478 78931500 -203262164 + AT_rich Low_complexity Low_complexity 1 22 0 371 305 86 43 chr1 78931531 78931741 -203261923 - L3 LINE CR1 -3 1574 1356 252 337 35 12 chr1 78931852 78931938 -203261726 - L2 LINE L2 -32 3281 3194 633 280 91 88 chr1 78932144 78932562 -203261102 - L2 LINE L2 -715 2599 2181 921 289 26 19 chr1 78932562 78932832 -203260832 - L2 LINE L2 -1919 1395 1124 264 220 73 46 chr1 78933582 78933691 -203259973 - MIR SINE MIR -1 261 150 328 336 62 23 chr1 78933846 78933974 -203259690 - MIR SINE MIR -56 152 20 226 220 0 0 chr1 78935082 78935132 -203258532 - L1M1 LINE L1 -748 5555 5506 298 285 61 43 chr1 78935306 78935616 -203258048 - L1M4 LINE L1 -743 5403 5038 1449 75 9 38 chr1 78935616 78935828 -203257836 - L1PA12 LINE L1 0 6168 5963 298 285 61 43 chr1 78935828 78936045 -203257619 - L1M4 LINE L1 -1108 5038 4826 2842 10 0 0 chr1 78936080 78936390 -203257274 - AluYa5 SINE Alu -1 310 1 455 344 16 16 chr1 78936471 78936660 -203257004 - MIR3 SINE MIR -3 205 17 1826 112 11 4 chr1 78936838 78937161 -203256503 - AluSc SINE Alu 0 363 39 201 129 0 0 chr1 78937319 78937350 -203256314 + (TG)n Simple_repeat Simple_repeat 2 32 0 244 250 28 14 chr1 78938129 78938201 -203255463 + MER94 DNA DNA 1 73 -61 742 287 6 0 chr1 78938345 78938512 -203255152 + MER45A DNA AcHobo 1 168 -10 330 340 81 24 chr1 78938553 78938800 -203254864 + L3 LINE CR1 1134 1394 -183 235 280 140 0 chr1 78939254 78939361 -203254303 - MIR SINE MIR -75 187 66 270 239 57 45 chr1 78939383 78939471 -203254193 - L2 LINE L2 0 3313 3225 1549 191 19 62 chr1 78939486 78939857 -203253807 - MLT1A1 LTR MaLR 0 365 11 2570 201 49 2 chr1 78939871 78940378 -203253286 - MLT1A1-int LTR MaLR 0 1735 1205 2185 255 13 34 chr1 78940365 78941034 -203252630 - MLT1A1-int LTR MaLR -641 1094 347 * 2312 179 9 9 chr1 78941053 78941482 -203252182 - MER65A LTR ERV1 -16 429 1 1359 171 23 12 chr1 78941482 78941739 -203251925 - MLT1A1-int LTR MaLR -1250 485 226 368 143 0 16 chr1 78941721 78941784 -203251880 - MLT1A1-int LTR MaLR -1304 67 6 * 1459 221 44 18 chr1 78941790 78942130 -203251534 - MLT1A1 LTR MaLR 0 365 17 540 56 0 0 chr1 78942356 78942428 -203251236 + (TA)n Simple_repeat Simple_repeat 2 73 0 194 261 108 31 chr1 78942566 78942631 -203251033 - L2 LINE L2 -211 3061 2992 31 0 0 0 chr1 78942734 78942765 -203250899 + AT_rich Low_complexity Low_complexity 1 31 0 220 286 63 16 chr1 78943023 78943086 -203250578 + L2 LINE L2 3207 3272 0 325 333 152 0 chr1 78943130 78943262 -203250402 - L2 LINE L2 -5 3267 3116 2544 183 25 45 chr1 78943861 78944392 -203249272 - MLT2B1 LTR ERVL 0 520 1 1003 216 81 70 chr1 78944469 78944962 -203248702 + MER39 LTR ERV1 1 565 0 223 188 14 14 chr1 78945744 78945813 -203247851 + GA-rich Low_complexity Low_complexity 1 69 0 180 329 21 63 chr1 78945961 78946104 -203247560 - L2 LINE L2 -1302 2012 1876 583 240 0 0 chr1 78946820 78946945 -203246719 + MIR SINE MIR 126 250 -12 220 271 41 66 chr1 78947318 78947440 -203246224 + MIR SINE MIR 70 188 -74 23 0 0 0 chr1 78947841 78947864 -203245800 + AT_rich Low_complexity Low_complexity 1 23 0 596 301 117 5 chr1 78947871 78948084 -203245580 - MIR SINE MIR -24 238 2 365 368 8 0 chr1 78948376 78948509 -203245155 + MIR SINE MIR 20 153 -109 369 0 0 0 chr1 78948509 78948550 -203245114 + (CA)n Simple_repeat Simple_repeat 2 42 0 1941 167 7 83 chr1 78949274 78949710 -203243954 - MER57A LTR ERV1 0 403 1 593 121 0 50 chr1 78949939 78950038 -203243626 + FLAM_A SINE Alu 33 126 -16 194 61 0 30 chr1 78950052 78950085 -203243579 + (TTAAA)n Simple_repeat Simple_repeat 4 35 0 22 0 0 0 chr1 78950600 78950622 -203243042 + AT_rich Low_complexity Low_complexity 1 22 0 268 314 23 0 chr1 78950921 78951007 -203242657 - L2 LINE L2 -5 3267 3180 1072 244 6 4 chr1 78951077 78951303 -203242361 + MER8 DNA MER2_type 13 239 0 243 304 38 6 chr1 78951342 78951475 -203242189 - L2 LINE L2 -177 3136 2998 22 35 0 0 chr1 78951506 78951535 -203242129 + AT_rich Low_complexity Low_complexity 1 29 0 2357 66 0 40 chr1 78951572 78951876 -203241788 + AluY SINE Alu 1 292 -19 205 304 80 0 chr1 78952474 78952586 -203241078 + MIR SINE MIR 101 221 -41 21 36 0 0 chr1 78952689 78952717 -203240947 + AT_rich Low_complexity Low_complexity 1 28 0 1308 181 89 43 chr1 78953417 78953766 -203239898 + MER93b LTR ERV1 7 371 -2 222 37 0 0 chr1 78954156 78954183 -203239481 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 251 294 98 20 chr1 78954590 78954692 -203238972 - MIR SINE MIR -76 132 23 314 295 96 19 chr1 78955509 78955665 -203237999 + MIR SINE MIR 2 169 -93 264 350 21 14 chr1 78956233 78956373 -203237291 + MIR SINE MIR 122 262 0 543 118 140 0 chr1 78956494 78956587 -203237077 - L1MA4 LINE L1 -22 6278 6173 43 35 0 0 chr1 78957497 78957554 -203236110 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr1 78958153 78958175 -203235489 + AT_rich Low_complexity Low_complexity 1 22 0 244 363 18 35 chr1 78958283 78958396 -203235268 + MIR SINE MIR 40 150 -58 2704 168 41 4 chr1 78959054 78959565 -203234099 - L1MD3 LINE L1 -1 7994 7465 1948 149 7 0 chr1 78959593 78959881 -203233783 - AluSx SINE Alu -22 290 1 424 234 11 11 chr1 78959884 78959978 -203233686 - MLT1F1 LTR MaLR -443 124 31 248 346 49 0 chr1 78962355 78962404 -203231260 - MIR SINE MIR -82 126 70 411 73 0 0 chr1 78962404 78962459 -203231205 + (TG)n Simple_repeat Simple_repeat 2 56 0 248 346 49 0 chr1 78962459 78962490 -203231174 - MIR SINE MIR -138 70 42 343 313 70 8 chr1 78963538 78963666 -203229998 + L2 LINE L2 3137 3272 0 2145 117 10 7 chr1 78963770 78964077 -203229587 - AluSq SINE Alu -5 308 1 435 350 77 73 chr1 78966321 78966595 -203227069 - L2 LINE L2 -21 3251 2977 13525 161 8 15 chr1 78966925 78969395 -203224269 - L1P LINE L1 -1827 4319 1867 27 29 0 0 chr1 78969509 78969543 -203224121 + AT_rich Low_complexity Low_complexity 1 34 0 214 235 29 15 chr1 78970302 78970374 -203223290 + (CTTTA)n Simple_repeat Simple_repeat 1 73 0 32 86 0 0 chr1 78970472 78970553 -203223111 + AT_rich Low_complexity Low_complexity 1 81 0 234 315 70 62 chr1 78971149 78971390 -203222274 + MIR SINE MIR 20 262 0 2612 165 56 6 chr1 78971726 78972258 -203221406 + L1MB4 LINE L1 5621 6179 -1 2227 98 14 0 chr1 78973155 78973452 -203220212 + AluSp SINE Alu 1 301 -12 3015 150 10 8 chr1 78973536 78974022 -203219642 + LOR1a-int LTR ERV1 5578 6064 -2056 544 159 0 0 chr1 78974021 78974109 -203219555 + LOR1a-int LTR ERV1 8030 8117 -3 * 3234 141 0 2 chr1 78974113 78974611 -203219053 + LOR1a LTR ERV1 1 497 0 697 321 79 84 chr1 78974638 78975110 -203218554 - L2 LINE L2 -252 3061 2606 1893 164 105 5 chr1 78975110 78975499 -203218165 + MSTA LTR MaLR 1 428 0 697 321 79 84 chr1 78975499 78975592 -203218072 - L2 LINE L2 -707 2606 2514 1910 259 49 40 chr1 78975595 78976022 -203217642 + L1ME3A LINE L1 5346 5790 -380 3821 143 66 26 chr1 78976022 78976777 -203216887 - LTR1 LTR ERV1 0 785 1 1910 259 49 40 chr1 78976777 78977070 -203216594 + L1ME3A LINE L1 5790 6079 -91 25383 140 9 27 chr1 78977081 78982911 -203210753 - L1PA8A LINE L1 -350 6096 324 4723 23 2 9 chr1 78982911 78983473 -203210191 - LTR6B LTR ERV1 0 558 1 25383 140 9 27 chr1 78983473 78983788 -203209876 - L1PA8A LINE L1 -6122 324 5 2086 188 14 41 chr1 78983812 78984209 -203209455 - L1MB1 LINE L1 -1 6167 5797 226 68 23 23 chr1 78984209 78984253 -203209411 - LTR9 LTR ERV1 -86 526 483 2086 188 14 41 chr1 78984253 78984432 -203209232 - L1MB1 LINE L1 -371 5797 5615 * 4797 218 24 140 chr1 78984430 78987066 -203206598 - L1M2 LINE L1 -4878 2331 1 185 353 63 93 chr1 78987416 78987685 -203205979 - L2 LINE L2 -64 3208 2948 333 111 0 0 chr1 78988503 78988557 -203205107 + L1PA16 LINE L1 6108 6161 -5 527 307 86 6 chr1 78988962 78989125 -203204539 + MIR SINE MIR 86 261 -1 226 139 0 0 chr1 78989174 78989210 -203204454 + L2 LINE L2 3269 3304 -9 331 303 139 36 chr1 78989325 78989490 -203204174 - L2 LINE L2 0 3313 3132 225 274 52 96 chr1 78989493 78989538 -203204126 + MIR SINE MIR 119 164 -98 2063 116 137 11 chr1 78989538 78989918 -203203746 + MSTA LTR MaLR 1 428 0 225 274 52 96 chr1 78989918 78990007 -203203657 + MIR SINE MIR 164 247 -15 731 206 46 40 chr1 78990160 78990335 -203203329 + MER58A DNA MER1_type 49 224 0 345 320 0 19 chr1 78990457 78990560 -203203104 - L2 LINE L2 -219 3053 2953 252 318 56 71 chr1 78990716 78990914 -203202750 - L2 LINE L2 -556 2758 2564 695 287 63 14 chr1 78991237 78991460 -203202204 - MIR SINE MIR -15 247 14 384 241 21 84 chr1 78991805 78991996 -203201668 + LTR67 LTR ERVL 350 528 -29 994 244 45 74 chr1 78995742 78996214 -203197450 + LTR37B LTR ERV1 8 465 -3 267 250 38 25 chr1 78998590 78998670 -203194994 - MLT1K LTR MaLR -112 476 396 7440 216 100 19 chr1 78998809 79000786 -203192878 - L1 LINE L1 -1630 5578 3762 1315 160 251 29 chr1 79000786 79001136 -203192528 - MSTA LTR MaLR 0 428 1 9167 149 8 45 chr1 79001136 79002774 -203190890 - THE1C-int LTR MaLR 0 1580 3 1682 167 79 20 chr1 79002776 79003130 -203190534 - THE1C LTR MaLR 0 375 1 7440 216 100 19 chr1 79003130 79003668 -203189996 - L1 LINE L1 -3446 3762 3269 200 35 35 0 chr1 79003668 79003697 -203189967 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 7440 216 100 19 chr1 79003697 79004597 -203189067 - L1 LINE L1 -3939 3269 1879 1691 306 18 32 chr1 79004774 79005392 -203188272 - L1 LINE L1 -6568 641 33 300 341 7 29 chr1 79006884 79007022 -203186642 - L1M4 LINE L1 -2077 4069 3935 504 326 50 44 chr1 79007034 79007440 -203186224 + L2 LINE L2 2780 3180 -133 2253 138 36 14 chr1 79008131 79008487 -203185177 - THE1B LTR MaLR 0 364 1 1875 75 75 14 chr1 79008487 79008765 -203184899 - THE1B-int LTR MaLR 0 1580 1286 1402 223 22 11 chr1 79008868 79009146 -203184518 - AluJo SINE Alu -31 281 1 210 420 0 0 chr1 79009165 79009253 -203184411 + L2 LINE L2 3182 3269 -3 807 209 83 77 chr1 79009542 79009881 -203183783 + MER2 DNA MER2_type 1 341 -3 324 48 0 0 chr1 79011153 79011195 -203182469 + (TTGTG)n Simple_repeat Simple_repeat 4 45 0 2254 86 0 0 chr1 79011198 79011478 -203182186 - AluSg1 SINE Alu -29 280 1 673 277 97 25 chr1 79011784 79012022 -203181642 - MIR SINE MIR 0 262 8 1538 199 14 0 chr1 79012682 79012996 -203180668 + AluJo SINE Alu 7 312 0 576 303 58 5 chr1 79013019 79013207 -203180457 - MIR SINE MIR -54 208 11 447 272 0 19 chr1 79013482 79013585 -203180079 + AluY SINE Alu 1 101 -217 2372 125 12 10 chr1 79013597 79013958 -203179706 + THE1B LTR MaLR 3 432 0 8179 116 11 1 chr1 79013958 79015464 -203178200 + THE1B-int LTR MaLR 20 1580 0 2698 111 0 0 chr1 79015466 79015828 -203177836 + THE1B LTR MaLR 3 364 0 1874 185 6 0 chr1 79016183 79016523 -203177141 + MER7A DNA MER2_type 3 342 -4 1242 267 60 39 chr1 79017000 79017487 -203176177 + MER20B DNA MER1_type 35 531 -252 687 153 102 0 chr1 79017852 79017989 -203175675 - L1PA16 LINE L1 -9 6157 6007 1535 103 21 0 chr1 79018195 79018428 -203175236 - L1P LINE L1 -792 5354 5117 5545 78 12 0 chr1 79018528 79019281 -203174383 + L1PA7 LINE L1 5392 6153 -1 213 39 0 0 chr1 79019951 79019977 -203173687 + (TTA)n Simple_repeat Simple_repeat 2 27 0 400 298 72 52 chr1 79020937 79021300 -203172364 + L1ME2 LINE L1 39 408 -5988 2820 255 60 80 chr1 79021741 79021873 -203171791 + L1ME2 LINE L1 1639 1772 -4443 2161 209 28 13 chr1 79021873 79022333 -203171331 - MLT1C LTR MaLR 0 467 1 2820 255 60 80 chr1 79022333 79024375 -203169289 + L1ME2 LINE L1 1772 3737 -2478 374 248 50 0 chr1 79024375 79024516 -203169148 + L1ME2 LINE L1 4475 4622 -1593 728 248 121 65 chr1 79024520 79024697 -203168967 + L1ME2 LINE L1 4864 5030 -1185 1768 164 10 17 chr1 79024697 79024989 -203168675 - AluJb SINE Alu -22 290 1 728 248 121 65 chr1 79024989 79025291 -203168373 + L1ME2 LINE L1 5030 5370 -845 868 202 39 81 chr1 79025321 79025546 -203168118 + L1ME2 LINE L1 5442 5652 -581 2322 105 0 3 chr1 79025546 79025852 -203167812 - AluSx SINE Alu -5 307 3 868 202 39 81 chr1 79025852 79025933 -203167731 + L1ME2 LINE L1 5652 5735 -498 1294 214 69 100 chr1 79025941 79026479 -203167185 + L1ME2 LINE L1 5703 6223 -10 1013 234 4 18 chr1 79026795 79027022 -203166642 - MER58A DNA MER1_type 0 224 1 596 341 97 19 chr1 79027091 79027529 -203166135 + L2 LINE L2 2643 3143 -170 2145 120 7 0 chr1 79027529 79027830 -203165834 - AluSp SINE Alu -10 303 1 596 341 97 19 chr1 79027830 79028009 -203165655 + L2 LINE L2 3143 3306 -7 507 95 0 0 chr1 79028136 79028210 -203165454 + (CA)n Simple_repeat Simple_repeat 2 75 0 551 171 11 0 chr1 79028409 79028497 -203165167 - Tigger3b DNA MER2_type 0 1231 1143 3354 133 108 16 chr1 79028597 79029054 -203164610 - Tigger3b DNA MER2_type -2290 738 198 2941 171 4 4 chr1 79029054 79029540 -203164124 - MER66B LTR ERV1 0 486 1 3354 133 108 16 chr1 79029540 79029758 -203163906 - Tigger3b DNA MER2_type -2830 198 1 23 68 0 0 chr1 79029873 79029917 -203163747 + AT_rich Low_complexity Low_complexity 1 44 0 34 65 0 0 chr1 79029995 79030057 -203163607 + AT_rich Low_complexity Low_complexity 1 62 0 345 253 280 67 chr1 79030133 79030500 -203163164 + MLT1J LTR MaLR 13 458 -53 868 125 2 5 chr1 79030500 79030742 -203162922 - MER51B LTR ERV1 0 377 48 375 132 171 13 chr1 79030727 79030803 -203162861 - MER51A LTR ERV1 -541 93 6 * 1982 144 43 3 chr1 79030810 79031137 -203162527 - MER51A-int LTR ERV1 -4 7812 7473 516 191 50 64 chr1 79031139 79031280 -203162384 - LTR54B LTR ERV1 -357 141 3 4530 97 47 0 chr1 79031280 79031918 -203161746 - MER51A-int LTR ERV1 -389 7148 6481 3207 114 39 0 chr1 79031914 79032379 -203161285 - MER51A-int LTR ERV1 -1244 6293 5811 * 762 64 27 0 chr1 79032384 79032494 -203161170 + MER51-int LTR ERV1 2997 3109 -4707 3468 120 25 21 chr1 79032500 79033067 -203160597 - MER51A-int LTR ERV1 -1720 5817 5249 2801 122 34 11 chr1 79033106 79033581 -203160083 - MER51-int LTR ERV1 -3929 3887 3402 8743 112 20 9 chr1 79033681 79034656 -203159008 - THE1B-int LTR MaLR -320 1260 266 2193 123 0 10 chr1 79034656 79034965 -203158699 + AluSx SINE Alu 1 306 -6 8743 112 20 9 chr1 79034965 79035235 -203158429 - THE1B-int LTR MaLR -1314 266 1 2207 153 28 14 chr1 79035235 79035594 -203158070 - THE1B LTR MaLR 0 364 1 808 234 63 0 chr1 79035694 79035852 -203157812 + MER96 DNA MER1_type? 8 175 0 209 217 0 0 chr1 79036520 79036566 -203157098 + (TA)n Simple_repeat Simple_repeat 2 47 0 2395 79 0 10 chr1 79036754 79037058 -203156606 + AluY SINE Alu 1 301 -10 1104 260 24 24 chr1 79038776 79039111 -203154553 - L1ME1 LINE L1 -7 6159 5825 206 323 30 61 chr1 79039657 79039821 -203153843 + L2 LINE L2 2899 3057 -215 245 286 0 14 chr1 79040128 79040198 -203153466 + MLT1K LTR MaLR 512 580 -8 32837 70 5 2 chr1 79040252 79045437 -203148227 - L1PA5 LINE L1 0 6154 952 16433 126 20 18 chr1 79045557 79048358 -203145306 - MER51B-int LTR ERV1 -4596 3220 416 1192 81 35 17 chr1 79048370 79048542 -203145122 - MER51B-int LTR ERV1 -7641 175 1 1812 120 0 43 chr1 79048542 79048883 -203144781 - MER51B LTR ERV1 0 377 1 207 173 0 39 chr1 79048886 79048938 -203144726 + T-rich Low_complexity Low_complexity 2 51 0 287 373 6 30 chr1 79049055 79049224 -203144440 + MIR SINE MIR 90 254 -8 273 204 0 19 chr1 79049815 79049869 -203143795 + MER103 DNA DNA 66 118 -48 213 333 30 45 chr1 79050233 79050365 -203143299 + MIR3 SINE MIR 78 207 -1 403 309 7 36 chr1 79051367 79051506 -203142158 - L2 LINE L2 0 3272 3138 419 327 37 0 chr1 79052031 79052193 -203141471 - L2 LINE L2 -989 2325 2158 22 35 0 0 chr1 79052621 79052650 -203141014 + AT_rich Low_complexity Low_complexity 1 29 0 18607 194 23 13 chr1 79053112 79059852 -203133812 - L1PA13 LINE L1 -2 6812 1 397 0 38 0 chr1 79060598 79060651 -203133013 + (TG)n Simple_repeat Simple_repeat 2 56 0 228 218 13 51 chr1 79061596 79061674 -203131990 + A-rich Low_complexity Low_complexity 4 78 0 387 157 0 0 chr1 79061680 79061750 -203131914 + GA-rich Low_complexity Low_complexity 2 71 0 196 304 0 0 chr1 79062776 79062832 -203130832 - L2 LINE L2 0 3313 3258 27 29 0 0 chr1 79063206 79063240 -203130424 + AT_rich Low_complexity Low_complexity 1 34 0 2405 180 20 16 chr1 79063283 79063722 -203129942 + MLT2B2 LTR ERVL 3 443 -72 279 0 0 0 chr1 79063732 79063763 -203129901 + (TA)n Simple_repeat Simple_repeat 1 31 0 261 164 18 0 chr1 79063822 79063877 -203129787 - MLT2B1 LTR ERVL 0 520 465 28 29 0 0 chr1 79063892 79063927 -203129737 + AT_rich Low_complexity Low_complexity 1 35 0 491 71 0 29 chr1 79063940 79064010 -203129654 + MLT2B2 LTR ERVL 3 70 -445 257 200 64 8 chr1 79064013 79064138 -203129526 + (TA)n Simple_repeat Simple_repeat 2 133 0 504 296 126 38 chr1 79064746 79066096 -203127568 - L1ME LINE L1 -567 5603 4117 2852 135 29 2 chr1 79116097 79116623 -203077041 + L1M1 LINE L1 2241 2780 -4785 1157 259 77 49 chr1 79116622 79117217 -203076447 - L1M4 LINE L1 -1024 5191 4580 * 911 158 42 12 chr1 79117238 79117403 -203076261 - MER34 LTR ERV1 0 542 373 1319 295 52 32 chr1 79117426 79117620 -203076044 - L1MEc LINE L1 -3692 2523 2334 2625 7 0 10 chr1 79117620 79117918 -203075746 - AluYa5 SINE Alu -16 295 1 1319 295 52 32 chr1 79117918 79118757 -203074907 - L1MEc LINE L1 -3881 2334 1503 344 279 56 34 chr1 79118752 79118985 -203074679 - L1MEc LINE L1 -5286 919 682 * 379 316 97 71 chr1 79119844 79120278 -203073386 - L1ME4a LINE L1 -285 5836 5392 22 0 0 0 chr1 79121318 79121340 -203072324 + AT_rich Low_complexity Low_complexity 1 22 0 331 376 114 10 chr1 79121964 79122166 -203071498 - L3 LINE CR1 -84 1493 1271 300 335 88 31 chr1 79122871 79123065 -203070599 + L2 LINE L2 2764 2968 -346 212 350 52 10 chr1 79123210 79123307 -203070357 + L2 LINE L2 3175 3275 -38 356 296 43 43 chr1 79124643 79124805 -203068859 + MER5A DNA MER1_type 13 174 -15 10366 167 77 58 chr1 79125329 79125812 -203067852 + L1MC1 LINE L1 6 478 -6122 7570 48 1 0 chr1 79125812 79125829 -203067835 - L1PA5 LINE L1 0 6154 6139 432 51 0 0 chr1 79125829 79125888 -203067776 + (TA)n Simple_repeat Simple_repeat 2 60 0 7570 48 1 0 chr1 79125888 79127590 -203066074 - L1PA5 LINE L1 -15 6139 4437 10366 167 77 58 chr1 79127590 79129663 -203064001 + L1MC1 LINE L1 478 2653 -3947 5183 203 24 34 chr1 79129662 79130569 -203063095 + L1MC1 LINE L1 4869 5783 -830 * 1973 87 8 0 chr1 79130569 79130822 -203062842 + AluSc SINE Alu 38 292 -17 180 0 0 0 chr1 79130828 79130848 -203062816 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 5183 203 24 34 chr1 79130848 79131692 -203061972 + L1MC1 LINE L1 5788 6607 -6 203 170 43 0 chr1 79132336 79132383 -203061281 + MIR SINE MIR 92 140 -122 266 250 0 44 chr1 79133155 79133223 -203060441 - L2 LINE L2 -1 3312 3248 1470 195 20 96 chr1 79134266 79134768 -203058896 - MLT2C2 LTR ERVL 0 464 1 285 254 48 0 chr1 79135168 79135231 -203058433 + L2 LINE L2 3247 3312 -1 269 224 0 71 chr1 79135471 79135569 -203058095 + T-rich Low_complexity Low_complexity 3 93 0 520 337 88 12 chr1 79136591 79136840 -203056824 + MLT1J LTR MaLR 68 335 -176 205 205 0 0 chr1 79137092 79137131 -203056533 + A-rich Low_complexity Low_complexity 1 39 0 253 370 38 54 chr1 79138159 79138343 -203055321 + L2 LINE L2 3019 3199 -73 330 229 72 0 chr1 79138345 79138428 -203055236 - MLT1H1 LTR MaLR 0 555 467 324 284 166 13 chr1 79138509 79138615 -203055049 - MLT1F1 LTR MaLR -86 509 421 1367 226 80 98 chr1 79138615 79139164 -203054500 - MLT1F LTR MaLR 0 542 4 324 284 166 13 chr1 79139164 79139273 -203054391 - MLT1F1 LTR MaLR -174 421 182 1891 100 89 4 chr1 79139425 79139696 -203053968 - AluSc SINE Alu -15 294 1 21 0 0 0 chr1 79139933 79139954 -203053710 + AT_rich Low_complexity Low_complexity 1 21 0 2055 128 3 3 chr1 79140077 79140374 -203053290 + AluSx SINE Alu 4 300 -12 1595 323 122 85 chr1 79141388 79142783 -203050881 - L2 LINE L2 -261 3052 1376 775 173 93 6 chr1 79142783 79142945 -203050719 + AluJo SINE Alu 93 268 -44 1595 323 122 85 chr1 79142945 79143733 -203049931 - L2 LINE L2 -1937 1376 619 21 36 0 0 chr1 79144095 79144123 -203049541 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr1 79144371 79144395 -203049269 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 242 353 17 0 chr1 79144536 79144652 -203049012 - MLT1J LTR MaLR -257 254 137 497 335 110 4 chr1 79146026 79146262 -203047402 + MIR SINE MIR 2 262 0 24 0 0 0 chr1 79147293 79147317 -203046347 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 79147680 79147702 -203045962 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr1 79148307 79148355 -203045309 + AT_rich Low_complexity Low_complexity 1 48 0 1643 149 3 86 chr1 79148653 79148810 -203044854 - AluSx SINE Alu -23 289 121 2612 29 3 3 chr1 79148810 79149116 -203044548 - AluY SINE Alu -5 306 1 1643 149 3 86 chr1 79149116 79149137 -203044527 - AluSx SINE Alu -191 121 100 784 84 0 0 chr1 79149137 79149244 -203044420 - L1PA8 LINE L1 0 6172 6066 1643 149 3 86 chr1 79149244 79149379 -203044285 - AluSx SINE Alu -212 100 1 187 349 68 77 chr1 79149558 79149910 -203043754 - L2 LINE L2 -7 3265 2917 691 151 0 50 chr1 79149921 79150060 -203043604 + FLAM_C SINE Alu 2 133 0 991 271 63 44 chr1 79150068 79150481 -203043183 + L1MDa LINE L1 3 423 -6117 4969 255 43 30 chr1 79150877 79152701 -203040963 + L1M4 LINE L1 3045 4891 -1255 2103 119 10 13 chr1 79152798 79153101 -203040563 - AluSx SINE Alu -10 302 1 366 264 19 0 chr1 79153173 79153279 -203040385 - Charlie7 DNA MER1_type -2502 110 3 284 257 29 58 chr1 79154640 79154811 -203038853 + HAL1b LINE L1 89 254 -1094 43 71 0 0 chr1 79154890 79154975 -203038689 + AT_rich Low_complexity Low_complexity 1 85 0 444 303 74 13 chr1 79154989 79155220 -203038444 + HAL1b LINE L1 364 608 -740 2127 132 7 0 chr1 79155675 79155985 -203037679 - AluSx SINE Alu 0 312 1 2415 38 3 0 chr1 79156539 79156828 -203036836 + AluY SINE Alu 1 290 -21 355 308 70 131 chr1 79156829 79157043 -203036621 - L2 LINE L2 -248 3065 2865 489 273 121 54 chr1 79157361 79157658 -203036006 - MLT1J LTR MaLR -192 319 3 2823 80 31 5 chr1 79157763 79158151 -203035513 + MLT2A1 LTR ERVL 3 400 -44 279 71 0 0 chr1 79158168 79158210 -203035454 + (TG)n Simple_repeat Simple_repeat 1 42 0 900 111 0 0 chr1 79158210 79158345 -203035319 + (TA)n Simple_repeat Simple_repeat 1 135 0 300 48 0 24 chr1 79158346 79158388 -203035276 + MLT2A1 LTR ERVL 413 453 0 1605 267 82 57 chr1 79159472 79160483 -203033181 + HAL1 LINE L1 1025 2060 -447 2182 156 20 65 chr1 79160509 79160957 -203032707 - Tigger2a DNA MER2_type -5 429 2 427 244 186 40 chr1 79160957 79161137 -203032527 + HAL1 LINE L1 2084 2236 -271 486 222 63 16 chr1 79161137 79161263 -203032401 + FLAM_A SINE Alu 2 133 0 427 244 186 40 chr1 79161263 79161357 -203032307 + HAL1 LINE L1 2236 2398 -109 971 161 18 6 chr1 79161837 79162005 -203031659 - AluSq SINE Alu -10 303 134 2289 87 10 6 chr1 79162005 79162316 -203031348 - AluSp SINE Alu -1 312 1 609 292 83 57 chr1 79163289 79163744 -203029920 + MER21B LTR ERV1 1 467 -396 3897 172 40 6 chr1 79163791 79164489 -203029175 - MER50 LTR ERV1 -12 722 1 1264 208 20 8 chr1 79164490 79164740 -203028924 + MER21B LTR ERV1 486 738 -125 225 222 22 0 chr1 79164868 79164913 -203028751 - Charlie8 DNA MER1_type -2189 228 183 274 236 0 0 chr1 79165183 79165238 -203028426 - L2 LINE L2 0 3313 3259 2340 76 3 16 chr1 79165899 79166214 -203027450 + AluY SINE Alu 1 311 0 522 83 0 0 chr1 79166217 79166289 -203027375 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 2276 131 34 82 chr1 79166756 79167037 -203026627 - MER65A LTR ERV1 0 445 193 1722 107 85 85 chr1 79167037 79167412 -203026252 + THE1C LTR MaLR 1 375 0 2276 131 34 82 chr1 79167412 79167595 -203026069 - MER65A LTR ERV1 -252 193 3 2828 219 31 7 chr1 79167597 79168217 -203025447 - MER65A-int LTR ERV1 0 4871 4237 2177 246 58 4 chr1 79168217 79168718 -203024946 - MER65A-int LTR ERV1 -739 4132 3605 373 171 23 68 chr1 79168773 79168861 -203024803 - MER4-int LTR ERV1 -969 3967 3884 * 2221 215 101 73 chr1 79168828 79170168 -203023496 - MER4-int LTR ERV1 -1237 5094 2992 657 178 126 40 chr1 79170261 79170435 -203023229 - MER4-int LTR ERV1 -2876 3722 3534 507 271 271 0 chr1 79170512 79170711 -203022953 - MIR SINE MIR -3 259 7 245 29 29 0 chr1 79170720 79170754 -203022910 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 268 279 0 0 chr1 79171185 79171253 -203022411 + MIR3 SINE MIR 125 192 -16 261 183 0 0 chr1 79171397 79171457 -203022207 + (CATA)n Simple_repeat Simple_repeat 2 61 0 267 259 106 12 chr1 79172055 79172140 -203021524 + MIR SINE MIR 84 176 -86 228 339 25 25 chr1 79172541 79172659 -203021005 + L1MEd LINE L1 244 361 -5758 218 79 0 26 chr1 79172895 79172933 -203020731 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 308 289 22 0 chr1 79173104 79173194 -203020470 - MIR SINE MIR 0 262 171 262 335 83 30 chr1 79173216 79173446 -203020218 + HAL1 LINE L1 1457 1698 -809 312 191 0 0 chr1 79173940 79174003 -203019661 + L1PB4 LINE L1 6089 6151 -5 259 308 42 0 chr1 79174075 79174218 -203019446 + L1MEd LINE L1 2220 2368 -3761 1441 163 143 60 chr1 79174221 79174674 -203018990 - LTR54B LTR ERV1 -7 491 1 233 280 213 17 chr1 79174695 79174934 -203018730 + L1MEd LINE L1 2406 2691 -3438 2019 157 53 53 chr1 79174962 79175394 -203018270 - MSTB1 LTR MaLR 0 432 1 1665 176 0 43 chr1 79175731 79176055 -203017609 + AluJb SINE Alu 3 312 0 1790 32 0 0 chr1 79176138 79176356 -203017308 - L1P LINE L1 -3070 3076 2859 4352 33 0 0 chr1 79176357 79176871 -203016793 + L1PA5 LINE L1 5641 6154 0 316 282 118 48 chr1 79177273 79177730 -203015934 + L1M4 LINE L1 4259 4747 -1399 207 0 0 0 chr1 79177992 79178015 -203015649 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 555 343 106 31 chr1 79178201 79179078 -203014586 + L2 LINE L2 1084 2026 -1288 955 226 77 42 chr1 79180471 79180781 -203012883 - MLT2D LTR ERVL 0 414 94 269 374 99 22 chr1 79180786 79181110 -203012554 + L2 LINE L2 2042 2390 -924 5572 196 45 47 chr1 79181674 79182705 -203010959 + Charlie1a DNA MER1_type 1 1033 -1728 2272 115 0 0 chr1 79182705 79183017 -203010647 + AluSq SINE Alu 2 313 0 5572 196 45 47 chr1 79183017 79183408 -203010256 + Charlie1a DNA MER1_type 1033 1422 -1339 1642 169 36 23 chr1 79183408 79183710 -203009954 + AluJo SINE Alu 1 306 -6 5572 196 45 47 chr1 79183710 79183744 -203009920 + Charlie1a DNA MER1_type 1422 1455 0 32 26 0 0 chr1 79183830 79183869 -203009795 + AT_rich Low_complexity Low_complexity 1 39 0 696 287 128 4 chr1 79184075 79184340 -203009324 + MLT1I LTR MaLR 54 351 -58 1554 176 18 89 chr1 79184704 79184851 -203008813 - MLT1A1 LTR MaLR 0 365 209 1357 239 49 21 chr1 79184851 79185236 -203008428 + MSTD LTR MaLR 1 396 0 1554 176 18 89 chr1 79185236 79185481 -203008183 - MLT1A1 LTR MaLR -156 209 1 527 308 12 6 chr1 79185654 79185826 -203007838 + MLT1L LTR MaLR 443 615 0 235 246 64 36 chr1 79186481 79186591 -203007073 - MLT1L LTR MaLR -210 405 293 225 94 0 0 chr1 79186597 79186629 -203007035 + (T)n Simple_repeat Simple_repeat 1 32 0 3293 122 40 23 chr1 79187610 79188128 -203005536 + MER1A DNA MER1_type 1 527 0 225 431 15 0 chr1 79188469 79188606 -203005058 + L2 LINE L2 3134 3272 0 191 286 16 16 chr1 79189159 79189222 -203004442 + MIR SINE MIR 150 212 -50 1002 311 78 35 chr1 79189255 79189743 -203003921 - L2 LINE L2 0 3313 2805 402 271 123 25 chr1 79190219 79190341 -203003323 - L2 LINE L2 0 3272 3139 571 338 55 13 chr1 79190431 79190668 -203002996 - MIR SINE MIR 0 262 16 3325 148 9 59 chr1 79191085 79191729 -203001935 - LTR9 LTR ERV1 0 612 1 23 0 0 0 chr1 79193646 79193669 -202999995 + AT_rich Low_complexity Low_complexity 1 23 0 301 287 48 39 chr1 79195323 79195553 -202998111 + L1MC4a LINE L1 5678 5909 -1899 21 0 0 0 chr1 79195749 79195770 -202997894 + AT_rich Low_complexity Low_complexity 1 21 0 1080 292 131 36 chr1 79196402 79197148 -202996516 + L1MEd LINE L1 7 823 -5296 11259 163 14 6 chr1 79197278 79199339 -202994325 - L1P LINE L1 -2400 3746 1670 7769 137 52 65 chr1 79199339 79200930 -202992734 + L1PA10 LINE L1 4086 5696 -472 2130 131 0 0 chr1 79200930 79201221 -202992443 + AluSg SINE Alu 1 291 -19 2882 9 0 3 chr1 79201226 79201545 -202992119 + AluYb8 SINE Alu 1 318 0 7769 137 52 65 chr1 79201545 79202034 -202991630 + L1PA10 LINE L1 5700 6162 -6 363 265 29 49 chr1 79202706 79202910 -202990754 + L1ME3A LINE L1 4940 5139 -1007 766 299 120 19 chr1 79203039 79203605 -202990059 + L1ME3A LINE L1 5308 5930 -240 183 290 65 11 chr1 79205303 79205396 -202988268 + MIR SINE MIR 114 211 -51 2325 79 0 13 chr1 79206174 79206478 -202987186 + AluSq SINE Alu 1 300 -13 396 0 0 0 chr1 79206597 79206641 -202987023 + (TG)n Simple_repeat Simple_repeat 2 45 0 342 291 121 85 chr1 79207471 79207869 -202985795 + L1M2 LINE L1 575 986 -5863 219 36 0 0 chr1 79208645 79208673 -202984991 + (CA)n Simple_repeat Simple_repeat 2 29 0 198 0 0 0 chr1 79209485 79209507 -202984157 + (A)n Simple_repeat Simple_repeat 1 22 0 207 0 0 0 chr1 79209892 79209915 -202983749 + (TAA)n Simple_repeat Simple_repeat 2 24 0 222 0 79 0 chr1 79210238 79210276 -202983388 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr1 79211845 79211874 -202981790 + AT_rich Low_complexity Low_complexity 1 29 0 280 309 64 58 chr1 79212655 79212860 -202980804 - MIR SINE MIR -38 224 21 422 284 110 19 chr1 79214663 79214818 -202978846 - MIR3 SINE MIR -11 197 29 1185 195 64 45 chr1 79215551 79215818 -202977846 + AluJo SINE Alu 23 294 -18 5566 30 0 0 chr1 79216918 79217586 -202976078 - L1PA3 LINE L1 -953 5193 4526 * 7538 21 4 0 chr1 79217584 79218542 -202975122 + L1PA3 LINE L1 5206 6167 0 358 271 158 66 chr1 79219247 79219377 -202974287 + MLT1I LTR MaLR 5 122 -287 774 156 0 15 chr1 79219377 79219512 -202974152 - FLAM_C SINE Alu 0 133 1 358 271 158 66 chr1 79219512 79219743 -202973921 + MLT1I LTR MaLR 122 399 -10 30 77 0 0 chr1 79219902 79219967 -202973697 + AT_rich Low_complexity Low_complexity 1 65 0 880 335 92 55 chr1 79220260 79221123 -202972541 - L2 LINE L2 0 3272 2376 550 288 37 65 chr1 79221841 79222164 -202971500 - MLT1I LTR MaLR -17 392 79 32 0 0 0 chr1 79222648 79222680 -202970984 + AT_rich Low_complexity Low_complexity 1 32 0 24 91 0 0 chr1 79222833 79222899 -202970765 + AT_rich Low_complexity Low_complexity 1 66 0 324 344 73 13 chr1 79224031 79224182 -202969482 + MIR SINE MIR 49 208 -54 283 382 73 21 chr1 79224217 79224558 -202969106 + L2 LINE L2 2690 3046 -226 223 292 0 62 chr1 79224760 79224856 -202968808 - MIR SINE MIR -10 252 163 23 0 0 0 chr1 79225718 79225741 -202967923 + AT_rich Low_complexity Low_complexity 1 23 0 1615 129 62 96 chr1 79227142 79227529 -202966135 + THE1C LTR MaLR 1 374 -1 219 298 0 18 chr1 79227638 79227695 -202965969 + L2 LINE L2 2994 3049 -223 300 391 31 21 chr1 79228096 79228288 -202965376 + MIR SINE MIR 3 196 -66 243 88 0 0 chr1 79228564 79228598 -202965066 + (TG)n Simple_repeat Simple_repeat 1 34 0 441 36 0 0 chr1 79228694 79228749 -202964915 + (TG)n Simple_repeat Simple_repeat 1 55 0 255 242 61 20 chr1 79229849 79229948 -202963716 + MIR SINE MIR 116 218 -44 222 248 171 60 chr1 79231520 79231637 -202962027 - L2 LINE L2 0 3313 3184 29 28 0 0 chr1 79231825 79231861 -202961803 + AT_rich Low_complexity Low_complexity 1 36 0 300 345 55 45 chr1 79232296 79232496 -202961168 - MIR SINE MIR -31 231 30 252 287 32 21 chr1 79233517 79233611 -202960053 + MIR SINE MIR 59 153 -109 21 0 0 0 chr1 79233684 79233705 -202959959 + AT_rich Low_complexity Low_complexity 1 21 0 265 306 24 59 chr1 79233959 79234129 -202959535 - MARNA DNA Mariner -30 556 393 280 317 44 44 chr1 79234249 79234432 -202959232 + L2 LINE L2 2580 2762 -552 759 284 4 44 chr1 79234596 79234742 -202958922 - MIR SINE MIR -14 248 112 2007 79 16 0 chr1 79234742 79235025 -202958639 + AluSc SINE Alu 25 311 0 759 284 4 44 chr1 79235025 79235102 -202958562 - MIR SINE MIR -150 112 33 522 332 79 9 chr1 79235738 79235952 -202957712 - MIR SINE MIR -33 229 1 459 349 65 11 chr1 79236808 79237026 -202956638 + MIR SINE MIR 16 249 -13 213 333 14 0 chr1 79237177 79237246 -202956418 + L2 LINE L2 3203 3272 0 1663 166 107 9 chr1 79237958 79238308 -202955356 - MLT2D LTR ERVL -39 481 1 236 333 72 0 chr1 79238689 79238800 -202954864 - MIR SINE MIR -95 167 49 477 301 115 35 chr1 79239251 79239477 -202954187 + MLT1L LTR MaLR 5 248 -367 284 311 22 0 chr1 79239532 79239622 -202954042 + MLT1L LTR MaLR 430 521 -94 2087 168 40 28 chr1 79239646 79240121 -202953543 - L1MC2 LINE L1 0 7769 6137 * 3707 186 20 18 chr1 79240111 79240379 -202953285 - L1MC3 LINE L1 -764 7021 6755 2264 102 0 13 chr1 79240379 79240694 -202952970 - AluSq SINE Alu -2 311 1 3707 186 20 18 chr1 79240694 79241190 -202952474 - L1MC3 LINE L1 -1030 6755 6256 190 332 134 28 chr1 79241606 79241755 -202951909 - MIR SINE MIR -64 144 35 1242 268 107 9 chr1 79242141 79242329 -202951335 - MLT1C LTR MaLR -4 463 295 1504 185 103 16 chr1 79242329 79242648 -202951016 + MER7A DNA MER2_type 1 345 -1 1242 268 107 9 chr1 79242648 79242881 -202950783 - MLT1C LTR MaLR -172 295 1 25 31 0 0 chr1 79243356 79243388 -202950276 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 79243531 79243552 -202950112 + AT_rich Low_complexity Low_complexity 1 21 0 2735 91 0 3 chr1 79244620 79244983 -202948681 + THE1B LTR MaLR 1 362 -2 185 301 36 36 chr1 79245031 79245114 -202948550 - L2 LINE L2 -4 3309 3227 216 0 0 0 chr1 79245385 79245409 -202948255 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 227 414 10 0 chr1 79248223 79248327 -202945337 - L2 LINE L2 -17 3296 3192 510 31 0 0 chr1 79248382 79248446 -202945218 + (TC)n Simple_repeat Simple_repeat 2 65 0 393 141 0 0 chr1 79248446 79248517 -202945147 + (TA)n Simple_repeat Simple_repeat 1 71 0 21 71 0 0 chr1 79248968 79249010 -202944654 + AT_rich Low_complexity Low_complexity 1 42 0 225 371 49 7 chr1 79249128 79249271 -202944393 - MIR SINE MIR -104 158 10 467 261 35 50 chr1 79249500 79249699 -202943965 - L1MC5 LINE L1 -66 7895 7700 623 281 58 12 chr1 79249708 79249950 -202943714 - L1MC5 LINE L1 -460 7501 7249 26 82 0 0 chr1 79250189 79250250 -202943414 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr1 79250554 79250588 -202943076 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr1 79250896 79250919 -202942745 + AT_rich Low_complexity Low_complexity 1 23 0 2798 234 17 19 chr1 79250987 79251618 -202942046 + MER82 DNA MER2_type 24 653 0 23 0 0 0 chr1 79251896 79251919 -202941745 + AT_rich Low_complexity Low_complexity 1 23 0 404 267 25 106 chr1 79252333 79252494 -202941170 - MIR SINE MIR -59 203 56 334 353 106 53 chr1 79252491 79252656 -202941008 + L2 LINE L2 2837 2992 -280 * 1462 180 29 76 chr1 79252656 79253039 -202940625 - MLT1A1 LTR MaLR 0 365 1 334 353 106 53 chr1 79253039 79253287 -202940377 + L2 LINE L2 2992 3272 0 21 36 0 0 chr1 79253543 79253571 -202940093 + AT_rich Low_complexity Low_complexity 1 28 0 262 269 9 24 chr1 79254814 79254921 -202938743 + MLT1J LTR MaLR 34 179 -309 227 250 83 37 chr1 79255068 79255176 -202938488 + MLT1L LTR MaLR 466 578 -37 21 36 0 0 chr1 79256085 79256113 -202937551 + AT_rich Low_complexity Low_complexity 1 28 0 374 286 10 0 chr1 79256907 79257005 -202936659 + L2 LINE L2 3207 3305 -8 225 0 0 0 chr1 79257126 79257151 -202936513 + (A)n Simple_repeat Simple_repeat 1 25 0 363 213 32 11 chr1 79258571 79258665 -202934999 - MLT1J2 LTR MaLR -23 427 332 3749 209 178 21 chr1 79258747 79259999 -202933665 + Charlie1 DNA MER1_type 1 2761 0 403 322 73 9 chr1 79259999 79260223 -202933441 - MLT1J1 LTR MaLR -207 243 3 371 284 101 7 chr1 79260388 79260536 -202933128 - MIR SINE MIR -14 248 87 2204 112 3 6 chr1 79260612 79260924 -202932740 - AluSp SINE Alu -2 311 1 2105 103 4 0 chr1 79263128 79263409 -202930255 - AluSp SINE Alu -12 301 20 1255 278 70 38 chr1 79263436 79264637 -202929027 - L1ME3 LINE L1 -334 5828 4586 * 1463 248 138 55 chr1 79264617 79265699 -202927965 - L1ME3 LINE L1 -2542 3604 2433 180 0 0 0 chr1 79265963 79265983 -202927681 + (A)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr1 79266116 79266146 -202927518 + AT_rich Low_complexity Low_complexity 1 30 0 7118 51 0 0 chr1 79266151 79267304 -202926360 - L1PA5 LINE L1 -8 6146 5003 344 298 23 41 chr1 79267332 79267503 -202926161 - L1M4 LINE L1 -1073 5073 4906 4425 238 47 12 chr1 79267612 79268887 -202924777 + L1M4 LINE L1 4026 5345 -801 23 54 0 0 chr1 79269366 79269403 -202924261 + AT_rich Low_complexity Low_complexity 1 37 0 318 308 68 8 chr1 79270179 79270296 -202923368 - L1MC/D LINE L1 -2345 5440 5317 25 31 0 0 chr1 79270321 79270353 -202923311 + AT_rich Low_complexity Low_complexity 1 32 0 298 231 39 0 chr1 79270376 79270454 -202923210 + L1M4 LINE L1 5160 5240 -906 639 164 30 0 chr1 79270604 79270738 -202922926 - L1MA4 LINE L1 -2 6298 6161 230 321 12 12 chr1 79270754 79270838 -202922826 + L2 LINE L2 1822 1905 -1409 321 363 43 46 chr1 79271426 79271729 -202921935 + L2 LINE L2 2665 2966 -348 297 293 179 19 chr1 79271851 79271957 -202921707 + L2 LINE L2 3142 3264 -8 214 147 0 0 chr1 79272227 79272261 -202921403 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 235 409 0 0 chr1 79272270 79272358 -202921306 + L2 LINE L2 3141 3228 -44 23 0 0 0 chr1 79272430 79272453 -202921211 + AT_rich Low_complexity Low_complexity 1 23 0 380 284 31 52 chr1 79272454 79272683 -202920981 - L1M4 LINE L1 -3235 3147 2924 1954 151 0 10 chr1 79272987 79273307 -202920357 - AluSx SINE Alu 0 312 1 29 60 0 0 chr1 79273325 79273375 -202920289 + AT_rich Low_complexity Low_complexity 1 50 0 244 320 21 0 chr1 79273532 79273629 -202920035 - L1M4 LINE L1 -3903 2481 2383 733 307 40 8 chr1 79273654 79273905 -202919759 - MIR SINE MIR -3 259 1 2375 88 48 3 chr1 79274520 79274874 -202918790 - L1PA13 LINE L1 -7 6156 5787 201 39 0 0 chr1 79275998 79276024 -202917640 + (CA)n Simple_repeat Simple_repeat 1 26 0 813 293 73 33 chr1 79276087 79276636 -202917028 - L1MEd LINE L1 -1969 4160 3590 204 40 0 0 chr1 79276651 79276676 -202916988 + (TC)n Simple_repeat Simple_repeat 2 26 0 1039 260 173 5 chr1 79277407 79277776 -202915888 - MER110 LTR ERV1 -42 449 19 5293 228 51 63 chr1 79277918 79279713 -202913951 - MER110-int LTR ERV1 0 4647 2875 48 32 0 0 chr1 79280131 79280193 -202913471 + AT_rich Low_complexity Low_complexity 1 62 0 22 35 0 0 chr1 79281385 79281414 -202912250 + AT_rich Low_complexity Low_complexity 1 29 0 2450 216 31 18 chr1 79282341 79282378 -202911286 - MLT2B3 LTR ERVL 0 554 519 428 35 17 0 chr1 79282378 79282436 -202911228 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2450 216 31 18 chr1 79282436 79282945 -202910719 - MLT2B3 LTR ERVL -35 519 1 612 244 98 0 chr1 79283415 79283640 -202910024 + L1M4 LINE L1 2781 3027 -3119 * 1149 290 70 6 chr1 79283638 79284155 -202909509 - L1MEd LINE L1 -3400 2729 2180 377 233 147 0 chr1 79284152 79284281 -202909383 + L1M4 LINE L1 3526 3673 -2473 * 1413 256 106 14 chr1 79284300 79284928 -202908736 + L1M4 LINE L1 3721 4416 -1730 321 274 74 32 chr1 79284935 79285125 -202908539 - HAL1 LINE L1 -1158 1349 1152 23 33 0 0 chr1 79285798 79285828 -202907836 + AT_rich Low_complexity Low_complexity 1 30 0 209 379 30 0 chr1 79286390 79286456 -202907208 - MER5A DNA MER1_type -71 118 51 322 337 123 22 chr1 79286927 79287203 -202906461 - HAL1 LINE L1 -867 1640 1337 320 290 47 12 chr1 79287203 79287372 -202906292 - L1MEd LINE L1 -4892 1227 1053 450 325 154 14 chr1 79287980 79288266 -202905398 + LTR33A LTR ERVL 2 327 -196 368 231 0 11 chr1 79288309 79288400 -202905264 + LTR33A LTR ERVL 406 495 -28 420 270 26 43 chr1 79288729 79288844 -202904820 + MIR SINE MIR 60 172 -90 404 346 19 0 chr1 79289205 79289309 -202904355 - MER91A DNA MER1_type 0 196 91 2330 78 0 0 chr1 79289837 79290133 -202903531 + AluY SINE Alu 1 296 -15 24 32 0 0 chr1 79290783 79290814 -202902850 + AT_rich Low_complexity Low_complexity 1 31 0 709 345 83 42 chr1 79291101 79291533 -202902131 + L1MB1 LINE L1 4 524 -5757 242 216 81 0 chr1 79291519 79291593 -202902071 + L1MB1 LINE L1 962 1041 -5240 * 4145 185 91 46 chr1 79291729 79292872 -202900792 + L1MB1 LINE L1 4341 5606 -766 338 23 0 0 chr1 79292872 79292916 -202900748 - L1PA4 LINE L1 -3 6152 6109 4145 185 91 46 chr1 79292916 79293716 -202899948 + L1MB1 LINE L1 5606 6369 -3 24 67 0 0 chr1 79294450 79294495 -202899169 + AT_rich Low_complexity Low_complexity 1 45 0 254 342 45 9 chr1 79296224 79296335 -202897329 - L2 LINE L2 -5 3267 3153 216 141 0 47 chr1 79296525 79296589 -202897075 + (GGAAA)n Simple_repeat Simple_repeat 3 63 0 240 35 0 0 chr1 79296687 79296716 -202896948 + (TG)n Simple_repeat Simple_repeat 2 30 0 272 323 37 12 chr1 79297904 79298065 -202895599 + L1MEc LINE L1 88 252 -5953 1280 322 37 2 chr1 79298469 79298870 -202894794 - LTR33 LTR ERVL -106 415 1 446 303 96 44 chr1 79298909 79299180 -202894484 + L1MEc LINE L1 1282 1606 -970 620 264 77 28 chr1 79299619 79299983 -202893681 + L1MEc LINE L1 2285 2666 -3549 249 247 25 99 chr1 79300056 79300218 -202893446 - L2 LINE L2 -164 3149 3000 569 261 111 10 chr1 79300288 79300495 -202893169 - L2 LINE L2 -452 2862 2635 24 53 0 0 chr1 79300533 79300571 -202893093 + AT_rich Low_complexity Low_complexity 1 38 0 222 240 288 34 chr1 79301640 79301786 -202891878 + MIR SINE MIR 35 217 -45 21 0 0 0 chr1 79301845 79301866 -202891798 + AT_rich Low_complexity Low_complexity 1 21 0 15792 170 14 12 chr1 79302913 79303281 -202890383 - L1MA3 LINE L1 -1 7723 7357 2867 13 0 0 chr1 79303281 79303599 -202890065 - AluYb8 SINE Alu 0 318 1 15792 170 14 12 chr1 79303599 79307745 -202885919 - L1MA3 LINE L1 -367 7357 3202 6827 59 0 0 chr1 79307725 79308578 -202885086 - L1PA7 LINE L1 -1 6153 5301 * 17722 159 46 18 chr1 79308545 79311592 -202882072 - L1MA3 LINE L1 -4311 3254 115 978 42 0 0 chr1 79311592 79311710 -202881954 - L1PA5 LINE L1 -5 6149 6032 17722 159 46 18 chr1 79311710 79311818 -202881846 - L1MA3 LINE L1 -7450 115 11 916 146 14 0 chr1 79311837 79311981 -202881683 - MER3 DNA MER1_type -59 150 5 361 326 206 5 chr1 79312000 79312184 -202881480 + MIR SINE MIR 32 252 -10 25 51 0 0 chr1 79313544 79313583 -202880081 + AT_rich Low_complexity Low_complexity 1 39 0 659 168 0 9 chr1 79313604 79313717 -202879947 - AluJb SINE Alu -30 282 171 264 292 146 23 chr1 79313883 79314013 -202879651 + MIR SINE MIR 51 196 -66 475 293 142 10 chr1 79314497 79314702 -202878962 - MIR SINE MIR 0 262 31 306 0 0 0 chr1 79315586 79315620 -202878044 + (CA)n Simple_repeat Simple_repeat 1 34 0 2028 149 26 6 chr1 79316362 79316711 -202876953 - L1PB3 LINE L1 0 6154 5799 297 85 47 57 chr1 79316757 79316863 -202876801 + (TA)n Simple_repeat Simple_repeat 2 106 0 2410 100 20 0 chr1 79316865 79317215 -202876449 - L1PB3 LINE L1 -365 5789 5433 1315 203 59 59 chr1 79317329 79317703 -202875961 - MLT1A2 LTR MaLR 0 374 1 305 241 71 43 chr1 79318286 79318427 -202875237 - MER103 DNA DNA 0 166 22 841 248 41 14 chr1 79319433 79319651 -202874013 + MER58A DNA MER1_type 1 224 0 954 201 0 31 chr1 79319659 79319853 -202873811 + MER5A DNA MER1_type 1 188 -1 314 365 65 17 chr1 79320282 79320512 -202873152 + MIR SINE MIR 2 242 -20 716 299 22 57 chr1 79321219 79321439 -202872225 + L2 LINE L2 1700 1907 -1407 1162 226 188 52 chr1 79321439 79322013 -202871651 - MLT1E1 LTR MaLR 0 654 3 716 299 22 57 chr1 79322013 79322106 -202871558 + L2 LINE L2 1907 2002 -1312 844 176 7 0 chr1 79322199 79322335 -202871329 + MLT1A1 LTR MaLR 195 331 -34 518 362 200 24 chr1 79322364 79323113 -202870551 + L2 LINE L2 2014 2894 -420 339 309 73 9 chr1 79323752 79323862 -202869802 + L2 LINE L2 3154 3270 -2 201 226 0 0 chr1 79323965 79324018 -202869646 + GA-rich Low_complexity Low_complexity 2 54 0 724 326 3 31 chr1 79324056 79324375 -202869289 + L1MDa LINE L1 20 329 -6211 5175 213 58 38 chr1 79324671 79326601 -202867063 + L1MDa LINE L1 862 2837 -3884 2091 115 3 13 chr1 79326808 79327120 -202866544 + AluSx SINE Alu 4 312 0 22 0 0 0 chr1 79328210 79328232 -202865432 + AT_rich Low_complexity Low_complexity 1 22 0 443 335 40 13 chr1 79328808 79328960 -202864704 - MIR SINE MIR -106 156 1 23 0 0 0 chr1 79329020 79329043 -202864621 + AT_rich Low_complexity Low_complexity 1 23 0 3370 137 16 57 chr1 79330216 79330845 -202862819 - LTR26 LTR ERV1 0 603 1 304 366 56 35 chr1 79330924 79331066 -202862598 + L2 LINE L2 3127 3271 -1 1978 164 0 0 chr1 79331094 79331405 -202862259 + AluJb SINE Alu 1 311 -1 197 262 0 0 chr1 79332247 79332289 -202861375 - L2 LINE L2 0 3272 3231 1760 198 81 63 chr1 79332322 79332781 -202860883 + MLT2B1 LTR ERVL 3 469 -51 465 193 8 59 chr1 79332823 79332904 -202860760 - MER53 DNA DNA -76 113 38 2000 198 19 19 chr1 79332904 79333318 -202860346 - MLT2D LTR ERVL 0 414 1 465 193 8 59 chr1 79333318 79333355 -202860309 - MER53 DNA DNA -151 38 1 2249 173 28 21 chr1 79334115 79334538 -202859126 + MSTB LTR MaLR 1 426 0 8224 188 34 12 chr1 79334538 79336153 -202857511 + MSTB-int LTR MaLR 1 1651 0 1981 168 83 13 chr1 79336153 79336551 -202857113 + MSTB LTR MaLR 1 426 0 332 80 0 20 chr1 79338601 79338651 -202855013 - L1PA6 LINE L1 -10 6144 6096 412 58 0 0 chr1 79338651 79338703 -202854961 + L1P2 LINE L1 5541 5592 -562 2238 95 3 0 chr1 79338840 79339124 -202854540 + AluSc SINE Alu 3 287 -22 650 292 187 0 chr1 79339752 79339961 -202853703 + MIR SINE MIR 13 260 -2 397 259 34 41 chr1 79340900 79341047 -202852617 + L2 LINE L2 3168 3313 0 185 255 112 41 chr1 79343972 79344070 -202849594 + MIR SINE MIR 86 190 -72 630 263 153 21 chr1 79344723 79345004 -202848660 - MLT1I LTR MaLR -29 380 63 1459 213 109 24 chr1 79345006 79345429 -202848235 - MER65C LTR ERV1 0 461 3 402 304 52 46 chr1 79345990 79346184 -202847480 - L3 LINE CR1 -559 1018 824 232 314 157 17 chr1 79346437 79346609 -202847055 - L2 LINE L2 0 3313 3118 1135 296 18 6 chr1 79346818 79347159 -202846505 + LTR16C LTR ERVL 135 479 -12 263 297 190 23 chr1 79347884 79348096 -202845568 + L2 LINE L2 2770 3016 -297 595 274 32 85 chr1 79348270 79348518 -202845146 - MLT1H LTR MaLR -190 359 125 299 286 40 40 chr1 79348703 79348829 -202844835 - MLT1I LTR MaLR 0 409 284 273 260 67 67 chr1 79348910 79349060 -202844604 - MLT1J2 LTR MaLR -281 169 20 204 196 214 0 chr1 79349106 79349162 -202844502 + L2 LINE L2 3246 3313 0 2057 131 0 7 chr1 79349579 79349885 -202843779 + AluY SINE Alu 6 309 -2 246 128 0 0 chr1 79351814 79351853 -202841811 + (CA)n Simple_repeat Simple_repeat 2 40 0 2119 108 3 10 chr1 79351901 79352215 -202841449 + AluSx SINE Alu 1 312 0 1542 189 0 33 chr1 79352782 79353089 -202840575 + AluJb SINE Alu 1 297 -15 199 355 103 5 chr1 79354001 79354215 -202839449 - L2 LINE L2 -144 3169 2935 37 0 0 0 chr1 79355325 79355362 -202838302 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 79355690 79355719 -202837945 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 79356176 79356198 -202837466 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr1 79356622 79356657 -202837007 + (CATA)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr1 79356798 79356819 -202836845 + AT_rich Low_complexity Low_complexity 1 21 0 1178 85 25 12 chr1 79357336 79357584 -202836080 + (GAAA)n Simple_repeat Simple_repeat 1 252 0 834 87 22 38 chr1 79357600 79357783 -202835881 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 183 299 130 48 chr1 79358272 79358479 -202835185 - L2 LINE L2 -1210 2104 1881 261 57 0 0 chr1 79358885 79358920 -202834744 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 266 240 64 24 chr1 79359280 79359405 -202834259 - L1ME4a LINE L1 0 6121 5992 713 291 49 32 chr1 79359426 79359918 -202833746 - L1MEc LINE L1 -3874 2522 2023 722 261 110 7 chr1 79360065 79360364 -202833300 - L1MEc LINE L1 -4579 1817 1488 23 54 0 0 chr1 79360375 79360412 -202833252 + AT_rich Low_complexity Low_complexity 1 37 0 818 108 8 0 chr1 79360412 79360542 -202833122 - L1MB3 LINE L1 -2 6181 6051 3128 156 33 2 chr1 79360635 79361185 -202832479 - L1MC1 LINE L1 -7 6326 5760 567 131 0 0 chr1 79361423 79361522 -202832142 - L1MB4 LINE L1 -2 6178 6080 316 311 64 31 chr1 79361657 79362074 -202831590 - L1MC4a LINE L1 -1797 6011 5546 311 316 72 9 chr1 79362132 79362412 -202831252 - L1MC4a LINE L1 -796 5563 5268 25 0 0 0 chr1 79362758 79362783 -202830881 + AT_rich Low_complexity Low_complexity 1 25 0 1799 202 26 6 chr1 79363212 79363559 -202830105 - MLT1A1 LTR MaLR 0 365 12 430 317 17 39 chr1 79363612 79363792 -202829872 + MIR SINE MIR 13 188 -74 239 291 18 0 chr1 79363769 79363824 -202829840 - L2 LINE L2 -48 3265 3210 * 736 89 0 0 chr1 79363825 79363926 -202829738 + AluSg/x SINE Alu 188 288 -24 349 329 0 0 chr1 79364211 79364296 -202829368 - L2 LINE L2 0 3313 3229 1880 182 42 30 chr1 79364520 79364949 -202828715 - Tigger2a DNA MER2_type 0 434 1 22 0 0 0 chr1 79365023 79365045 -202828619 + AT_rich Low_complexity Low_complexity 1 22 0 311 353 40 23 chr1 79366107 79366280 -202827384 - L2 LINE L2 -990 2324 2149 585 287 218 21 chr1 79366502 79366878 -202826786 - LTR16A LTR ERVL 0 457 8 2760 95 0 11 chr1 79368421 79368800 -202824864 - THE1C LTR MaLR 0 375 1 9836 117 34 35 chr1 79368805 79370380 -202823284 - THE1C-int LTR MaLR -6 1574 1 2251 101 14 113 chr1 79370380 79370598 -202823066 - THE1C LTR MaLR 0 375 216 1910 102 0 4 chr1 79370598 79370853 -202822811 + AluY SINE Alu 1 254 -57 2251 101 14 113 chr1 79370853 79371050 -202822614 - THE1C LTR MaLR -159 216 1 321 361 90 13 chr1 79372661 79372816 -202820848 - MIR3 SINE MIR -21 187 21 34 24 0 0 chr1 79373952 79373993 -202819671 + AT_rich Low_complexity Low_complexity 1 41 0 299 270 58 15 chr1 79374092 79374229 -202819435 - L1ME LINE L1 -295 5826 5684 1325 275 139 37 chr1 79374522 79375319 -202818345 - L1MC4 LINE L1 -17 8025 7058 333 321 0 0 chr1 79375361 79375473 -202818191 + CT-rich Low_complexity Low_complexity 2 113 0 21 89 0 0 chr1 79375505 79375561 -202818103 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr1 79375983 79376005 -202817659 + AT_rich Low_complexity Low_complexity 1 22 0 1613 257 47 32 chr1 79376507 79376732 -202816932 + LTR55 LTR ERV 3 223 -325 2248 125 16 25 chr1 79376732 79377099 -202816565 + THE1B LTR MaLR 1 364 0 1613 257 47 32 chr1 79377099 79377403 -202816261 + LTR55 LTR ERV 223 540 -8 225 366 11 0 chr1 79377835 79377928 -202815736 - MIR SINE MIR -168 94 1 1452 220 87 27 chr1 79379716 79380003 -202813661 - MLT1B LTR MaLR 0 390 75 2236 157 20 0 chr1 79380003 79380398 -202813266 - MER57A LTR ERV1 0 403 1 1452 220 87 27 chr1 79380398 79380478 -202813186 - MLT1B LTR MaLR -315 75 1 24 77 0 0 chr1 79380523 79380575 -202813089 + AT_rich Low_complexity Low_complexity 1 52 0 231 263 211 11 chr1 79380575 79380670 -202812994 - L2 LINE L2 -12 3301 3188 461 222 104 0 chr1 79380775 79380910 -202812754 + MER53 DNA DNA 23 171 -18 236 29 0 29 chr1 79381014 79381048 -202812616 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 202 300 185 8 chr1 79381370 79381500 -202812164 + L2 LINE L2 2592 2744 -570 27 29 0 0 chr1 79382009 79382043 -202811621 + AT_rich Low_complexity Low_complexity 1 34 0 183 139 0 0 chr1 79382090 79382126 -202811538 + (TG)n Simple_repeat Simple_repeat 1 36 0 195 276 17 17 chr1 79382662 79382720 -202810944 + L3b LINE CR1 1432 1489 -94 272 295 120 44 chr1 79382855 79383038 -202810626 - L2 LINE L2 -189 3083 2887 29 0 0 0 chr1 79383699 79383728 -202809936 + AT_rich Low_complexity Low_complexity 1 29 0 509 281 63 50 chr1 79384880 79385496 -202808168 + L1ME4a LINE L1 5458 6120 -1 202 154 0 26 chr1 79386133 79386172 -202807492 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1459 171 26 91 chr1 79386379 79386795 -202806869 - MLT1B LTR MaLR -1 389 1 2163 75 4 0 chr1 79389374 79389674 -202803990 + AluSc SINE Alu 15 315 0 1316 169 40 7 chr1 79389767 79390040 -202803624 + L1MA4 LINE L1 6011 6292 -8 1300 170 46 108 chr1 79390118 79390507 -202803157 - MLT1A1 LTR MaLR 0 365 1 309 328 47 47 chr1 79390727 79390919 -202802745 + L2 LINE L2 3115 3306 -7 212 229 33 0 chr1 79391006 79391067 -202802597 + GA-rich Low_complexity Low_complexity 2 64 0 357 24 0 0 chr1 79392862 79392904 -202800760 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 380 44 19 chr1 79392977 79393135 -202800529 + MIR3 SINE MIR 4 165 -43 184 358 22 58 chr1 79393231 79393368 -202800296 - L2 LINE L2 0 3313 3182 22 0 0 0 chr1 79393477 79393499 -202800165 + AT_rich Low_complexity Low_complexity 1 22 0 816 318 85 63 chr1 79393527 79394118 -202799546 - L2 LINE L2 -355 2959 2356 279 282 103 3 chr1 79394111 79394272 -202799392 - MIR SINE MIR 0 262 39 * 333 350 88 36 chr1 79394357 79394745 -202798919 - L2 LINE L2 -974 2340 1933 271 193 23 0 chr1 79394910 79394998 -202798666 + (TA)n Simple_repeat Simple_repeat 2 91 0 277 198 25 0 chr1 79395074 79395155 -202798509 + (TA)n Simple_repeat Simple_repeat 1 83 0 1531 273 76 32 chr1 79395412 79396152 -202797512 + HAL1 LINE L1 738 1509 -998 21 57 0 0 chr1 79396162 79396197 -202797467 + AT_rich Low_complexity Low_complexity 1 35 0 701 264 83 0 chr1 79396278 79396471 -202797193 + HAL1 LINE L1 1678 1886 -621 220 283 68 124 chr1 79396574 79397002 -202796662 - L2 LINE L2 -2599 715 312 388 316 29 63 chr1 79397439 79397645 -202796019 + L2 LINE L2 2427 2625 -689 224 254 85 51 chr1 79397646 79397705 -202795959 - L2 LINE L2 -11 3261 3201 1713 158 10 19 chr1 79398076 79398386 -202795278 - L1PA15 LINE L1 -1 6164 5858 281 311 168 0 chr1 79398825 79398992 -202794672 - L2 LINE L2 0 3313 3119 289 302 123 0 chr1 79399178 79399284 -202794380 + L2 LINE L2 3194 3312 -1 322 308 81 22 chr1 79399454 79399639 -202794025 + MIR SINE MIR 8 203 -59 180 0 0 0 chr1 79399735 79399755 -202793909 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 300 137 0 0 chr1 79400534 79400585 -202793079 + (CA)n Simple_repeat Simple_repeat 1 51 0 29 47 0 0 chr1 79400954 79400997 -202792667 + AT_rich Low_complexity Low_complexity 1 43 0 251 139 0 0 chr1 79400997 79401033 -202792631 + U2 snRNA snRNA 1 36 -152 642 204 21 31 chr1 79401549 79401740 -202791924 - MER53 DNA DNA 0 189 1 284 250 0 12 chr1 79402710 79402790 -202790874 - MLT1K LTR MaLR -22 566 488 284 323 109 30 chr1 79402844 79403045 -202790619 - MLT1L LTR MaLR -205 410 194 750 78 0 0 chr1 79404276 79404378 -202789286 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 291 343 29 9 chr1 79404738 79404843 -202788821 - MIR3 SINE MIR -28 180 74 251 206 168 28 chr1 79404877 79404984 -202788680 - MLT1I LTR MaLR -8 401 280 559 326 29 93 chr1 79405006 79405448 -202788216 - L3 LINE CR1 -47 1530 1117 1575 213 76 5 chr1 79406460 79406840 -202786824 - L1MB7 LINE L1 -9 6175 5769 1482 177 25 50 chr1 79407023 79407340 -202786324 - AluJo SINE Alu -3 309 1 429 308 101 12 chr1 79407865 79408034 -202785630 + L2 LINE L2 2908 3091 -222 424 340 10 49 chr1 79408717 79408920 -202784744 + MIR SINE MIR 28 222 -40 2161 113 55 12 chr1 79408931 79409277 -202784387 + MER46B DNA MER2_type 1 236 0 23 33 0 0 chr1 79410921 79410951 -202782713 + AT_rich Low_complexity Low_complexity 1 30 0 972 289 107 65 chr1 79411215 79411419 -202782245 - L2 LINE L2 -1 3312 3118 2111 119 3 3 chr1 79411419 79411730 -202781934 + AluSq SINE Alu 3 313 0 972 289 107 65 chr1 79411730 79412335 -202781329 - L2 LINE L2 -195 3118 2478 759 263 142 88 chr1 79412338 79412951 -202780713 - L2 LINE L2 -1222 2092 1447 210 233 0 0 chr1 79413277 79413320 -202780344 - L2 LINE L2 -8 3264 3222 * 383 333 41 0 chr1 79413303 79413450 -202780214 - MIR SINE MIR -40 222 70 727 183 38 0 chr1 79413450 79413581 -202780083 + FRAM SINE Alu 1 135 -41 453 287 130 59 chr1 79413676 79414000 -202779664 + HAL1 LINE L1 1730 2076 -431 797 239 53 18 chr1 79414007 79414233 -202779431 + L1MA9 LINE L1 6039 6272 -40 535 289 42 17 chr1 79414296 79414583 -202779081 + HAL1 LINE L1 2140 2433 -74 232 193 53 18 chr1 79415700 79415757 -202777907 + MIR SINE MIR 117 175 -87 237 98 0 0 chr1 79416285 79416326 -202777338 + (TG)n Simple_repeat Simple_repeat 1 41 0 209 191 0 0 chr1 79416395 79416442 -202777222 + (TG)n Simple_repeat Simple_repeat 1 47 0 531 291 185 33 chr1 79417014 79417741 -202775923 + L2 LINE L2 2174 3010 -262 185 244 0 0 chr1 79417836 79417881 -202775783 - L2 LINE L2 -2 3311 3267 230 348 169 8 chr1 79417911 79418029 -202775635 + L2 LINE L2 3132 3268 -4 729 217 0 0 chr1 79418452 79418627 -202775037 + (CA)n Simple_repeat Simple_repeat 2 176 0 180 293 147 40 chr1 79419883 79420033 -202773631 + L2 LINE L2 3139 3304 -9 293 256 0 37 chr1 79420047 79420129 -202773535 + GA-rich Low_complexity Low_complexity 1 79 0 25 0 0 0 chr1 79420258 79420283 -202773381 + AT_rich Low_complexity Low_complexity 1 25 0 2009 136 10 3 chr1 79420978 79421335 -202772329 + AluSx SINE Alu 1 359 0 910 109 23 17 chr1 79421345 79421519 -202772145 + GA-rich Low_complexity Low_complexity 3 177 0 188 0 74 0 chr1 79421527 79421554 -202772110 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 523 287 103 31 chr1 79421554 79421777 -202771887 + MIR SINE MIR 20 258 -4 185 348 9 52 chr1 79421819 79421934 -202771730 - L2 LINE L2 -12 3260 3151 276 319 106 31 chr1 79422095 79422349 -202771315 - L2 LINE L2 -350 2964 2692 211 277 0 0 chr1 79422444 79422491 -202771173 + (TG)n Simple_repeat Simple_repeat 2 48 0 337 251 110 67 chr1 79422915 79423053 -202770611 + L1ME3 LINE L1 4783 4914 -1232 2197 86 20 10 chr1 79423053 79423356 -202770308 + AluSx SINE Alu 1 306 -6 337 251 110 67 chr1 79423356 79423472 -202770192 + L1ME3 LINE L1 4914 5048 -1098 352 323 79 11 chr1 79423501 79423767 -202769897 + L1ME3 LINE L1 5668 5951 -211 225 304 36 0 chr1 79424045 79424101 -202769563 - L2 LINE L2 -67 3205 3148 737 309 70 27 chr1 79424149 79424901 -202768763 - L1MEd LINE L1 -3003 3537 2753 328 248 21 56 chr1 79424968 79425154 -202768510 - L1MEd LINE L1 -3901 2639 2468 512 297 92 41 chr1 79425517 79425907 -202767757 - L1MEd LINE L1 -5264 1266 857 197 147 13 53 chr1 79425942 79426017 -202767647 + CT-rich Low_complexity Low_complexity 3 74 0 2095 140 70 9 chr1 79426065 79426408 -202767256 - THE1B LTR MaLR 0 364 1 5988 109 35 3 chr1 79426408 79427365 -202766299 - THE1B-int LTR MaLR 0 1580 578 809 98 45 0 chr1 79427368 79427480 -202766184 - THE1B LTR MaLR -247 117 1 429 171 26 8 chr1 79427480 79427597 -202766067 + CT-rich Low_complexity Low_complexity 3 121 0 230 359 0 0 chr1 79428008 79428086 -202765578 + L2 LINE L2 3229 3306 -7 214 300 33 0 chr1 79428517 79428577 -202765087 + L2 LINE L2 3240 3301 -12 183 80 0 0 chr1 79428578 79428603 -202765061 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 215 264 19 0 chr1 79429275 79429328 -202764336 - L2 LINE L2 -9 3304 3251 21 0 0 0 chr1 79429404 79429425 -202764239 + AT_rich Low_complexity Low_complexity 1 21 0 557 259 17 17 chr1 79429520 79429694 -202763970 - MER104 DNA Tc2 0 180 7 651 289 11 16 chr1 79429696 79429883 -202763781 - MIR SINE MIR -64 198 13 272 304 92 87 chr1 79430810 79430994 -202762670 + MER5A DNA MER1_type 4 188 -1 609 274 71 57 chr1 79432062 79432343 -202761321 + L2 LINE L2 3021 3305 -8 257 279 70 12 chr1 79432674 79432760 -202760904 - L2 LINE L2 -51 3262 3172 789 284 69 45 chr1 79433030 79433407 -202760257 + L2 LINE L2 2924 3309 -4 210 420 43 0 chr1 79434204 79434273 -202759391 - L3b LINE CR1 -57 1526 1455 2055 118 17 0 chr1 79434679 79434968 -202758696 + AluSg SINE Alu 2 295 -15 212 167 0 0 chr1 79435480 79435522 -202758142 + T-rich Low_complexity Low_complexity 1 42 0 2581 42 0 24 chr1 79435541 79435874 -202757790 - L1PA4 LINE L1 -3 6152 5828 2333 81 0 29 chr1 79436081 79436390 -202757274 + AluSp SINE Alu 1 300 -13 314 375 38 82 chr1 79436410 79436677 -202756987 + L2 LINE L2 3016 3270 -2 509 363 104 22 chr1 79436881 79437468 -202756196 + L2 LINE L2 2225 2859 -455 2268 88 0 0 chr1 79437488 79437798 -202755866 - AluSg SINE Alu 0 310 1 273 381 29 22 chr1 79437882 79438021 -202755643 + L2 LINE L2 2945 3084 -188 248 206 44 88 chr1 79438613 79438749 -202754915 - L1M4 LINE L1 -826 5320 5191 2352 165 9 7 chr1 79438792 79439229 -202754435 - L1PB4 LINE L1 -3 6217 5780 12908 208 25 19 chr1 79439229 79442360 -202751304 - L1PB4 LINE L1 -913 5297 2146 979 318 88 21 chr1 79442417 79443292 -202750372 - L1M4 LINE L1 -1048 5098 4165 457 255 57 83 chr1 79443293 79443607 -202750057 - L1M4 LINE L1 -2702 3444 3139 22 35 0 0 chr1 79443829 79443858 -202749806 + AT_rich Low_complexity Low_complexity 1 29 0 185 274 105 63 chr1 79445675 79445770 -202747894 + L2 LINE L2 3195 3293 -20 8488 105 2 2 chr1 79446552 79447817 -202745847 - L1PA7 LINE L1 -3673 2473 1209 19938 97 4 6 chr1 79447823 79451516 -202742148 + L1PA7 LINE L1 2472 6154 0 304 234 75 43 chr1 79451925 79452019 -202741645 + MIR SINE MIR 105 201 -61 1235 285 118 25 chr1 79452616 79453132 -202740532 + L2 LINE L2 867 1430 -1884 217 220 34 0 chr1 79453563 79453622 -202740042 + (TA)n Simple_repeat Simple_repeat 2 62 0 254 301 36 0 chr1 79454019 79454102 -202739562 - MIR SINE MIR -13 249 164 1261 271 54 16 chr1 79454456 79454898 -202738766 - L1PB4 LINE L1 -419 2152 1694 1542 146 9 169 chr1 79455260 79455527 -202738137 - MLT1A1 LTR MaLR -2 363 55 396 0 0 0 chr1 79455527 79455571 -202738093 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1942 124 11 0 chr1 79455574 79455856 -202737808 - AluSx SINE Alu -27 285 1 1542 146 9 169 chr1 79455856 79456016 -202737648 - MLT1A1 LTR MaLR -312 53 1 1831 162 21 9 chr1 79456262 79456595 -202737069 - L1MA9 LINE L1 -194 6354 6018 11583 207 64 22 chr1 79456654 79459133 -202734531 - L1MA9 LINE L1 -969 5413 3039 216 0 0 0 chr1 79459133 79459157 -202734507 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 351 0 0 0 chr1 79459156 79459195 -202734469 + (TG)n Simple_repeat Simple_repeat 2 40 0 11583 207 64 22 chr1 79459157 79459941 -202733723 - L1MA9 LINE L1 -3343 3039 2054 6327 60 9 1 chr1 79459955 79460753 -202732911 - L1PA7 LINE L1 -8 6146 5343 3134 243 35 19 chr1 79460734 79461200 -202732464 - L1PB4 LINE L1 -4575 1566 1109 * 2071 103 7 3 chr1 79461200 79461482 -202732182 + AluSx SINE Alu 11 293 -19 3134 243 35 19 chr1 79461482 79462506 -202731158 - L1PB4 LINE L1 -5032 1109 2 580 224 29 62 chr1 79462489 79462699 -202730965 - HAL1 LINE L1 -853 1654 1452 * 243 319 81 34 chr1 79462729 79462964 -202730700 - HAL1 LINE L1 -1159 1348 1103 568 291 79 13 chr1 79463327 79463554 -202730110 - MIR SINE MIR -8 254 13 31 99 0 0 chr1 79465087 79465188 -202728476 + AT_rich Low_complexity Low_complexity 1 101 0 2185 234 109 32 chr1 79467107 79467146 -202726518 - L1ME1 LINE L1 -31 6135 6100 1521 191 43 4 chr1 79467146 79467424 -202726240 + AluJb SINE Alu 1 289 -23 2185 234 109 32 chr1 79467424 79468140 -202725524 - L1ME1 LINE L1 -66 6100 5359 333 348 51 0 chr1 79468700 79468878 -202724786 - MIR SINE MIR -71 191 5 1149 153 64 8 chr1 79468917 79469166 -202724498 - L1MA4 LINE L1 -4 6296 6034 21 71 0 0 chr1 79469222 79469264 -202724400 + AT_rich Low_complexity Low_complexity 1 42 0 259 276 164 0 chr1 79469563 79469679 -202723985 - MIR SINE MIR -3 259 125 394 303 8 0 chr1 79469859 79469978 -202723686 - MER94 DNA DNA 0 134 15 1102 173 24 19 chr1 79471366 79471574 -202722090 + MER6B DNA MER2_type 1 209 -1 977 287 54 6 chr1 79471621 79472019 -202721645 - LTR16C LTR ERVL 0 491 33 503 259 149 46 chr1 79472139 79472401 -202721263 + L1ME3A LINE L1 5440 5674 -496 2213 113 0 0 chr1 79472401 79472701 -202720963 + AluSq SINE Alu 1 300 -13 503 259 149 46 chr1 79472701 79472890 -202720774 + L1ME3A LINE L1 5674 5950 -220 251 225 75 0 chr1 79473079 79473159 -202720505 - L1MC4 LINE L1 -1340 6702 6617 24 67 0 0 chr1 79473568 79473613 -202720051 + AT_rich Low_complexity Low_complexity 1 45 0 388 296 86 43 chr1 79474602 79475079 -202718585 + L1ME LINE L1 4939 5429 -755 242 241 84 0 chr1 79475308 79475391 -202718273 + L1ME LINE L1 5708 5797 -324 181 286 63 16 chr1 79476212 79476275 -202717389 + L3 LINE CR1 1510 1575 -2 241 216 135 0 chr1 79476796 79476870 -202716794 - HsTC2 DNA Tc2 -1814 84 1 475 300 70 8 chr1 79476910 79477153 -202716511 - MIR SINE MIR 0 262 5 452 314 35 12 chr1 79476988 79477157 -202716507 - MIR SINE MIR -89 173 1 237 310 99 0 chr1 79477193 79477264 -202716400 + L2 LINE L2 3235 3312 -1 22 0 0 30 chr1 79477492 79477513 -202716151 + AT_rich Low_complexity Low_complexity 1 22 -10 1379 134 25 0 chr1 79477513 79477751 -202715913 - L1MA3 LINE L1 0 6305 6062 22 0 0 30 chr1 79477751 79477762 -202715902 + AT_rich Low_complexity Low_complexity 22 32 0 28 48 0 0 chr1 79479364 79479406 -202714258 + AT_rich Low_complexity Low_complexity 1 42 0 246 224 0 0 chr1 79480561 79480610 -202713054 + (TTTG)n Simple_repeat Simple_repeat 4 52 0 766 235 46 107 chr1 79480615 79481065 -202712599 - MLT1F LTR MaLR -78 489 1 330 347 61 0 chr1 79481142 79481338 -202712326 + L2 LINE L2 3056 3263 -50 21 71 0 0 chr1 79481642 79481684 -202711980 + AT_rich Low_complexity Low_complexity 1 42 0 1977 134 23 7 chr1 79482495 79482802 -202710862 + AluSx SINE Alu 1 312 0 1070 206 145 0 chr1 79483372 79483668 -202709996 + L1MC4 LINE L1 7560 7898 -144 3533 137 29 27 chr1 79483767 79484387 -202709277 - L1MB1 LINE L1 0 6168 5548 1602 176 0 4 chr1 79484566 79484845 -202708819 + AluJo SINE Alu 21 298 -14 28 86 0 0 chr1 79486444 79486514 -202707150 + AT_rich Low_complexity Low_complexity 1 70 0 256 384 10 0 chr1 79486938 79487037 -202706627 + L2 LINE L2 2196 2295 -1019 27 81 0 0 chr1 79489110 79489172 -202704492 + AT_rich Low_complexity Low_complexity 1 62 0 3138 325 102 39 chr1 79489405 79491587 -202702077 - L2 LINE L2 -6 3307 978 2404 97 0 0 chr1 79492845 79493155 -202700509 - AluSg SINE Alu 0 310 1 1595 192 7 17 chr1 79493798 79494085 -202699579 + AluJo SINE Alu 3 286 -26 21 71 0 0 chr1 79494313 79494355 -202699309 + AT_rich Low_complexity Low_complexity 1 42 0 8105 43 1 0 chr1 79494772 79495791 -202697873 - L1P LINE L1 -3063 3083 2064 17705 45 2 0 chr1 79495791 79497993 -202695671 + L1P LINE L1 3089 5294 -852 422 54 0 0 chr1 79497993 79498047 -202695617 + L1PA5 LINE L1 6098 6153 -1 629 248 7 0 chr1 79498462 79498615 -202695049 + L1M4 LINE L1 2380 2533 -3613 550 292 64 27 chr1 79499833 79500052 -202693612 - MIR SINE MIR -9 253 27 380 313 36 29 chr1 79500140 79500447 -202693217 + L1M4 LINE L1 4263 4571 -1575 26 104 0 0 chr1 79500638 79500734 -202692930 + AT_rich Low_complexity Low_complexity 1 96 0 1353 93 103 5 chr1 79502279 79502493 -202691171 - L1PA7 LINE L1 -6 6148 5914 278 376 129 5 chr1 79502533 79502727 -202690937 + L2 LINE L2 2310 2527 -787 664 314 113 24 chr1 79502742 79503070 -202690594 + L2 LINE L2 2949 3305 -8 452 279 25 44 chr1 79503083 79503241 -202690423 - L2 LINE L2 -3 3310 3156 460 320 154 58 chr1 79503273 79503899 -202689765 + L2 LINE L2 2554 3237 -35 2404 65 0 13 chr1 79505046 79505356 -202688308 - AluY SINE Alu -5 306 1 237 330 57 101 chr1 79507010 79507485 -202686179 - L2 LINE L2 -530 2784 2331 264 259 176 26 chr1 79507635 79507948 -202685716 + L1ME4a LINE L1 5725 6084 -37 1302 204 60 23 chr1 79508256 79508693 -202684971 - MLT1B LTR MaLR 0 390 2 238 356 151 43 chr1 79508748 79509346 -202684318 - L2 LINE L2 -675 2639 1978 231 337 48 42 chr1 79509424 79509590 -202684074 - MIR SINE MIR -10 252 86 241 241 19 0 chr1 79509750 79509804 -202683860 + L2 LINE L2 3254 3308 -5 27 49 0 0 chr1 79511116 79511157 -202682507 + AT_rich Low_complexity Low_complexity 1 41 0 317 349 78 16 chr1 79516308 79516437 -202677227 - L2 LINE L2 0 3272 3136 908 173 13 13 chr1 79516883 79517033 -202676631 + FRAM SINE Alu 1 150 -26 1112 197 33 70 chr1 79517051 79517381 -202676283 - L1MB7 LINE L1 0 6184 5867 183 100 0 0 chr1 79518369 79518399 -202675265 + (TA)n Simple_repeat Simple_repeat 1 30 0 261 109 47 0 chr1 79518435 79518499 -202675165 + (TA)n Simple_repeat Simple_repeat 2 68 0 1519 150 20 0 chr1 79518545 79518799 -202674865 + L1MC1 LINE L1 6062 6320 -13 1510 152 4 0 chr1 79519167 79519397 -202674267 + 7SLRNA srpRNA srpRNA 2 232 -88 289 329 178 53 chr1 79520570 79520795 -202672869 + L2 LINE L2 3016 3268 -4 2573 150 41 89 chr1 79521070 79521173 -202672491 + L1MA9 LINE L1 5097 5203 -1109 1657 179 6 16 chr1 79521173 79521485 -202672179 + AluJo SINE Alu 1 309 -3 2573 150 41 89 chr1 79521485 79522183 -202671481 + L1MA9 LINE L1 5203 5868 -444 42563 34 21 1 chr1 79522189 79528219 -202665445 - L1PA2 LINE L1 0 6155 1 1900 176 62 7 chr1 79528217 79528485 -202665179 + L1MA9 LINE L1 5856 6108 -204 14377 114 29 51 chr1 79528485 79529101 -202664563 - Tigger1 DNA MER2_type 0 2418 1790 1632 187 7 3 chr1 79529101 79529384 -202664280 + AluJb SINE Alu 2 285 -27 14377 114 29 51 chr1 79529384 79531025 -202662639 - Tigger1 DNA MER2_type -628 1790 217 2091 144 0 0 chr1 79531025 79531323 -202662341 + AluSx SINE Alu 1 298 -14 14377 114 29 51 chr1 79531323 79531536 -202662128 - Tigger1 DNA MER2_type -2201 217 1 1900 176 62 7 chr1 79531536 79531700 -202661964 + L1MA9 LINE L1 6108 6312 0 517 282 53 38 chr1 79532231 79532455 -202661209 - MIR SINE MIR -30 232 3 24 32 0 0 chr1 79533344 79533375 -202660289 + AT_rich Low_complexity Low_complexity 1 31 0 922 232 56 0 chr1 79533742 79533940 -202659724 - MIR SINE MIR -45 217 9 262 212 15 0 chr1 79534069 79534135 -202659529 - L1MA10 LINE L1 0 6334 6268 1926 188 67 88 chr1 79534135 79534520 -202659144 + L1MA10 LINE L1 5712 6081 -253 2082 98 3 20 chr1 79534520 79534816 -202658848 + AluSp SINE Alu 1 291 -22 1926 188 67 88 chr1 79534816 79535054 -202658610 + L1MA10 LINE L1 6081 6322 -12 1413 255 39 14 chr1 79535062 79535493 -202658171 - L1ME2 LINE L1 -51 6113 5672 371 250 86 0 chr1 79535492 79535608 -202658056 + L1ME3 LINE L1 5869 5994 -168 * 434 236 36 77 chr1 79535616 79535737 -202657927 + L1ME3A LINE L1 5954 6064 -106 1259 183 3 7 chr1 79535737 79536022 -202657642 - L1MA4 LINE L1 -5 6295 6012 434 236 36 77 chr1 79536022 79536120 -202657544 + L1ME3A LINE L1 6064 6164 -6 632 265 152 10 chr1 79536624 79536828 -202656836 - MIR SINE MIR -15 247 15 1074 263 32 19 chr1 79536870 79537186 -202656478 + L2 LINE L2 2994 3313 0 461 333 161 26 chr1 79537496 79537926 -202655738 - L2 LINE L2 -602 2712 2225 261 0 0 0 chr1 79538238 79538267 -202655397 + (CTG)n Simple_repeat Simple_repeat 2 30 0 1068 278 139 30 chr1 79538442 79538939 -202654725 - MER90 LTR ERV1 -22 553 3 1364 200 49 74 chr1 79539070 79539224 -202654440 - MER58B DNA MER1_type -2079 341 185 1031 209 130 36 chr1 79539224 79539554 -202654110 + MLT1A1 LTR MaLR 1 361 -4 1364 200 49 74 chr1 79539554 79539749 -202653915 - MER58B DNA MER1_type -2235 185 1 23 0 0 0 chr1 79540014 79540037 -202653627 + AT_rich Low_complexity Low_complexity 1 23 0 863 169 0 45 chr1 79540209 79540363 -202653301 - MER46A DNA MER2_type -89 147 1 482 347 96 44 chr1 79540546 79540996 -202652668 - L2 LINE L2 -465 2849 2377 297 391 30 75 chr1 79541311 79541646 -202652018 + L2 LINE L2 2891 3210 -62 230 293 170 9 chr1 79541706 79541812 -202651852 + L2 LINE L2 3183 3305 -8 2025 144 7 3 chr1 79541865 79542164 -202651500 + AluJb SINE Alu 3 302 -10 2474 107 0 6 chr1 79542753 79543100 -202650564 + L1P3 LINE L1 5 349 -6112 * 3897 88 25 0 chr1 79543099 79543667 -202649997 + L1P LINE L1 3005 3586 -2560 2750 144 35 68 chr1 79544236 79544828 -202648836 - L1PA15 LINE L1 0 6165 5593 198 0 0 0 chr1 79544828 79544850 -202648814 + (TTA)n Simple_repeat Simple_repeat 3 24 0 42677 42 14 4 chr1 79544850 79550924 -202642740 - L1PA4 LINE L1 -18 6137 3 1176 115 5 31 chr1 79550923 79551115 -202642549 - L1PA15 LINE L1 -557 5608 5422 * 292 303 46 9 chr1 79551115 79551224 -202642440 - MLT1L LTR MaLR -308 307 195 21 71 0 0 chr1 79551485 79551527 -202642137 + AT_rich Low_complexity Low_complexity 1 42 0 913 190 34 10 chr1 79551536 79551741 -202641923 - MER2 DNA MER2_type -135 210 1 2273 107 0 7 chr1 79553080 79553388 -202640276 - AluSq SINE Alu -7 306 1 21 0 0 0 chr1 79554188 79554209 -202639455 + AT_rich Low_complexity Low_complexity 1 21 0 768 244 99 0 chr1 79554293 79554494 -202639170 + MER58A DNA MER1_type 4 224 0 258 257 14 40 chr1 79554608 79554682 -202638982 + MIR SINE MIR 42 113 -95 332 212 88 15 chr1 79555089 79555226 -202638438 - MER103 DNA DNA 0 166 20 1003 243 42 4 chr1 79555355 79555594 -202638070 - MIR SINE MIR -2 260 13 659 95 74 3 chr1 79555595 79555934 -202637730 + (TA)n Simple_repeat Simple_repeat 1 363 0 402 332 126 4 chr1 79556394 79556671 -202636993 - L2 LINE L2 -75 3238 2928 912 189 51 0 chr1 79557167 79557342 -202636322 + MER20 DNA MER1_type 35 218 -1 635 152 9 27 chr1 79557795 79557907 -202635757 + MER20 DNA MER1_type 110 219 0 22 0 0 0 chr1 79558583 79558605 -202635059 + AT_rich Low_complexity Low_complexity 1 22 0 633 232 0 52 chr1 79558820 79558975 -202634689 - MER58A DNA MER1_type -32 192 46 233 378 31 8 chr1 79560007 79560134 -202633530 + L3 LINE CR1 1101 1230 -347 270 56 0 0 chr1 79560959 79560995 -202632669 + (CA)n Simple_repeat Simple_repeat 2 37 0 358 361 75 41 chr1 79561132 79561520 -202632144 + L2 LINE L2 2460 2860 -454 2114 103 4 4 chr1 79561556 79561859 -202631805 - AluSq SINE Alu 0 304 2 408 284 127 8 chr1 79562289 79562423 -202631241 + L2 LINE L2 1861 2010 -1304 25 0 0 0 chr1 79562423 79562448 -202631216 + AT_rich Low_complexity Low_complexity 1 25 0 43563 41 4 3 chr1 79562448 79568587 -202625077 - L1PA3 LINE L1 -3 6152 9 1558 275 91 93 chr1 79568596 79569760 -202623904 + L2 LINE L2 1997 3181 -132 183 42 0 0 chr1 79569760 79569784 -202623880 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 1558 275 91 93 chr1 79569784 79569916 -202623748 + L2 LINE L2 3181 3312 -1 208 279 89 0 chr1 79569962 79570041 -202623623 - MIR SINE MIR -57 205 120 1921 152 43 25 chr1 79570262 79570630 -202623034 - THE1C LTR MaLR 0 375 1 271 302 198 16 chr1 79571401 79571593 -202622071 - MIR SINE MIR -18 244 18 25 0 0 0 chr1 79571899 79571924 -202621740 + AT_rich Low_complexity Low_complexity 1 25 0 670 243 26 0 chr1 79571950 79572102 -202621562 + MIR SINE MIR 59 214 -48 24 0 0 0 chr1 79573438 79573462 -202620202 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 79574051 79574072 -202619592 + AT_rich Low_complexity Low_complexity 1 21 0 330 246 79 40 chr1 79574174 79574300 -202619364 - L1ME4a LINE L1 0 6121 5991 295 256 51 39 chr1 79574446 79574602 -202619062 - L1ME4a LINE L1 0 6104 5947 642 271 67 20 chr1 79575455 79575977 -202617687 - L1ME4a LINE L1 -735 5412 4864 867 300 94 32 chr1 79576123 79576467 -202617197 - L1ME4a LINE L1 -1472 4657 4336 2846 143 2 4 chr1 79576467 79576923 -202616741 - L1PA15 LINE L1 -2 6163 5709 867 300 94 32 chr1 79576923 79577398 -202616266 - L1ME4a LINE L1 -1793 4336 3787 330 220 9 46 chr1 79577522 79577631 -202616033 - L1ME4a LINE L1 -4893 1226 1122 26 0 0 0 chr1 79577675 79577701 -202615963 + AT_rich Low_complexity Low_complexity 1 26 0 363 73 0 0 chr1 79578902 79578957 -202614707 + (TA)n Simple_repeat Simple_repeat 1 55 0 569 235 271 10 chr1 79579047 79579465 -202614199 - LTR50 LTR ERVL 0 795 93 1022 280 59 75 chr1 79580822 79581459 -202612205 - L2 LINE L2 -179 3134 2511 1225 171 143 68 chr1 79581465 79581892 -202611772 - MER69 DNA AcHobo -20 2506 2048 1502 263 59 10 chr1 79581893 79582285 -202611379 - MER69 DNA AcHobo -1984 542 132 2356 179 95 7 chr1 79582314 79582778 -202610886 - MLT1D LTR MaLR 0 505 1 1449 113 40 9 chr1 79582778 79582998 -202610666 - MER30 DNA MER1_type 0 230 2 2475 173 46 14 chr1 79583009 79583513 -202610151 + L1MB7 LINE L1 5646 6165 -19 744 191 14 14 chr1 79583531 79583678 -202609986 - MER69 DNA AcHobo -2378 148 2 422 304 18 0 chr1 79583678 79583790 -202609874 - L2 LINE L2 -787 2527 2414 7886 173 28 21 chr1 79583841 79583856 -202609808 - L1MB1 LINE L1 0 7587 7574 351 0 0 0 chr1 79583856 79583895 -202609769 + (CA)n Simple_repeat Simple_repeat 2 40 0 7886 173 28 21 chr1 79583895 79586236 -202607428 - L1MB1 LINE L1 -13 7574 5216 1538 244 29 18 chr1 79586239 79586693 -202606971 - L1MB1 LINE L1 -3435 4130 3672 1908 129 0 0 chr1 79586702 79586965 -202606699 + AluSx SINE Alu 1 263 -49 341 169 17 0 chr1 79586965 79587059 -202606605 + AluJ/FRAM SINE Alu 230 327 0 1318 268 36 14 chr1 79587059 79587596 -202606068 - L1MB1 LINE L1 -3898 3667 3098 2430 191 25 51 chr1 79587596 79588160 -202605504 - MER44D DNA MER2_type 0 605 2 1318 268 36 14 chr1 79588160 79588322 -202605342 - L1MB1 LINE L1 -4467 3098 2941 1442 192 58 4 chr1 79589196 79589472 -202604192 + AluSx SINE Alu 1 291 -21 414 274 120 14 chr1 79589524 79589732 -202603932 - L1MC/D LINE L1 -2035 5773 5544 222 37 0 0 chr1 79590131 79590158 -202603506 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 214 272 81 138 chr1 79590787 79590904 -202602760 - L2 LINE L2 -903 2411 2289 5804 97 31 5 chr1 79590904 79591844 -202601820 + L1PA14 LINE L1 5191 6157 -4 214 272 81 138 chr1 79591844 79592009 -202601655 - L2 LINE L2 -1025 2289 2145 249 353 8 50 chr1 79592107 79592226 -202601438 + L2 LINE L2 3188 3301 -12 302 299 54 48 chr1 79592776 79592943 -202600721 - L2 LINE L2 -6 3307 3140 230 344 24 93 chr1 79592975 79593310 -202600354 + L2 LINE L2 2790 3092 -180 335 314 39 39 chr1 79593680 79593833 -202599831 + MER5A DNA MER1_type 31 183 -6 205 373 56 8 chr1 79594013 79594139 -202599525 - L2 LINE L2 -208 3064 2933 357 264 136 21 chr1 79594921 79595061 -202598603 + L2 LINE L2 3154 3309 -4 * 622 346 70 45 chr1 79595037 79595349 -202598315 - L2 LINE L2 -10 3262 2943 21 36 0 0 chr1 79596654 79596682 -202596982 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 79596982 79597018 -202596646 + AT_rich Low_complexity Low_complexity 1 36 0 204 188 0 83 chr1 79597018 79597066 -202596598 - L2 LINE L2 -3 3310 3267 21 36 0 0 chr1 79597941 79597969 -202595695 + AT_rich Low_complexity Low_complexity 1 28 0 497 329 99 20 chr1 79598225 79598568 -202595096 - L2 LINE L2 -1400 1914 1545 744 233 101 2 chr1 79598613 79598867 -202594797 - MER69 DNA AcHobo -891 335 4 869 332 112 10 chr1 79598870 79599469 -202594195 - L2 LINE L2 -1894 1420 761 190 284 68 14 chr1 79599532 79599606 -202594058 - L2 LINE L2 -37 3235 3158 4513 167 15 9 chr1 79599701 79600580 -202593084 - L1PA12 LINE L1 -2302 3844 2961 9089 138 22 6 chr1 79600580 79602908 -202590756 + L1PA12 LINE L1 3836 6168 0 2212 105 0 10 chr1 79602929 79603242 -202590422 + AluSg SINE Alu 1 310 0 334 206 227 0 chr1 79603750 79603847 -202589817 + L2 LINE L2 3190 3308 -5 272 289 79 0 chr1 79604035 79604111 -202589553 + MIR SINE MIR 70 151 -111 682 242 117 22 chr1 79604128 79604351 -202589313 - MIR SINE MIR -17 245 2 254 284 125 0 chr1 79604366 79604454 -202589210 + MIR SINE MIR 156 254 -8 767 308 70 78 chr1 79604502 79605274 -202588390 - L3 LINE CR1 -122 1455 690 30 0 0 0 chr1 79605457 79605487 -202588177 + AT_rich Low_complexity Low_complexity 1 30 0 34 0 0 0 chr1 79605510 79605544 -202588120 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 79606156 79606177 -202587487 + AT_rich Low_complexity Low_complexity 1 21 0 3963 195 130 3 chr1 79606467 79607397 -202586267 + L1PB1 LINE L1 106 1153 -5710 15056 196 18 8 chr1 79607405 79608713 -202584951 + L1PB1 LINE L1 1311 2605 -4262 2448 87 0 0 chr1 79608713 79609024 -202584640 - AluY SINE Alu 0 311 1 15056 196 18 8 chr1 79609024 79612822 -202580842 + L1PB1 LINE L1 2605 6511 -356 425 43 14 80 chr1 79612832 79612970 -202580694 + (TA)n Simple_repeat Simple_repeat 2 130 0 2530 100 5 5 chr1 79612980 79613349 -202580315 + L1PB1 LINE L1 6498 6866 -1 25 0 0 0 chr1 79613349 79613374 -202580290 + AT_rich Low_complexity Low_complexity 1 25 0 1871 119 35 0 chr1 79613531 79613792 -202579872 - AluSx SINE Alu -42 270 1 389 306 124 12 chr1 79614144 79614402 -202579262 - L1ME LINE L1 -350 5771 5485 653 337 124 44 chr1 79615569 79616027 -202577637 + L2 LINE L2 1366 1786 -1528 3148 95 30 2 chr1 79616027 79616468 -202577196 - MLT2A2 LTR ERVL 0 453 1 653 337 124 44 chr1 79616468 79617136 -202576528 + L2 LINE L2 1786 2582 -732 213 289 183 48 chr1 79617291 79617395 -202576269 + L2 LINE L2 3155 3272 0 331 281 34 48 chr1 79617499 79617645 -202576019 + MLT1I LTR MaLR 67 210 -199 339 236 87 55 chr1 79617685 79617812 -202575852 + MLT1I LTR MaLR 277 407 -2 1707 88 66 0 chr1 79617960 79618187 -202575477 + AluSx SINE Alu 39 280 -32 381 93 0 0 chr1 79618195 79618249 -202575415 + (GGGGA)n Simple_repeat Simple_repeat 3 56 0 180 77 0 0 chr1 79618839 79618865 -202574799 + (A)n Simple_repeat Simple_repeat 1 26 0 318 323 16 74 chr1 79619057 79619246 -202574418 - MLT1K LTR MaLR -358 230 53 567 53 13 0 chr1 79619714 79619790 -202573874 - MADE1 DNA Mariner 0 80 4 228 314 57 57 chr1 79619854 79619978 -202573686 - L2 LINE L2 -12 3260 3137 24 0 0 0 chr1 79621690 79621714 -202571950 + AT_rich Low_complexity Low_complexity 1 24 0 788 269 82 0 chr1 79621717 79621925 -202571739 - MIR SINE MIR -21 241 17 1154 263 88 32 chr1 79623385 79623761 -202569903 + LTR16A LTR ERVL 54 450 0 454 174 0 101 chr1 79623801 79623840 -202569824 - MER5A DNA MER1_type -83 106 65 2265 90 3 0 chr1 79623840 79624129 -202569535 - AluSg SINE Alu -19 291 2 454 174 0 101 chr1 79624129 79624198 -202569466 - MER5A DNA MER1_type -124 65 9 182 244 0 0 chr1 79624215 79624256 -202569408 + MIR SINE MIR 183 223 -39 204 331 63 8 chr1 79624806 79624933 -202568731 + L2 LINE L2 2831 2964 -308 209 395 12 0 chr1 79625134 79625220 -202568444 + L2 LINE L2 3185 3271 -1 3184 155 67 11 chr1 79625390 79626043 -202567621 - L1MB7 LINE L1 -9 6175 5486 2142 105 3 13 chr1 79626868 79627172 -202566492 + AluSg SINE Alu 1 301 -9 226 373 29 35 chr1 79627761 79627934 -202565730 - MER5A DNA MER1_type -6 183 1 275 313 0 0 chr1 79628097 79628177 -202565487 + L2 LINE L2 3229 3308 -5 746 208 0 0 chr1 79628196 79628321 -202565343 + FLAM_A SINE Alu 2 126 -7 486 163 37 37 chr1 79629122 79629307 -202564357 + L1MA7 LINE L1 6000 6290 -1 252 296 56 0 chr1 79629419 79629527 -202564137 + L1MEd LINE L1 995 1108 -5011 401 319 67 28 chr1 79629581 79629970 -202563694 + HAL1 LINE L1 1236 1639 -868 21 0 0 0 chr1 79630342 79630363 -202563301 + AT_rich Low_complexity Low_complexity 1 21 0 1216 198 0 4 chr1 79630853 79631080 -202562584 + AluJo SINE Alu 75 300 -12 658 245 33 13 chr1 79631911 79632062 -202561602 + MIR SINE MIR 16 169 -93 186 71 0 0 chr1 79633435 79633463 -202560201 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 79634672 79634693 -202558971 + AT_rich Low_complexity Low_complexity 1 21 0 15777 30 3 1 chr1 79635312 79637972 -202555692 - L1PA3 LINE L1 -4 6151 3486 602 207 7 21 chr1 79638027 79638172 -202555492 - L1MA10 LINE L1 0 6334 6192 371 297 301 10 chr1 79639285 79639703 -202553961 + L3 LINE CR1 680 1219 -358 1758 164 40 0 chr1 79640137 79640435 -202553229 + MER7A DNA MER2_type 39 346 0 604 301 21 11 chr1 79640458 79640644 -202553020 + L2 LINE L2 2843 3030 -283 379 261 147 45 chr1 79640632 79640789 -202552875 - MER5A DNA MER1_type -7 182 10 * 275 302 57 63 chr1 79641704 79641863 -202551801 - MIR SINE MIR 0 262 105 213 341 150 42 chr1 79642107 79642274 -202551390 + MIR3 SINE MIR 6 190 -18 214 191 0 43 chr1 79642221 79642268 -202551396 - MIR SINE MIR -85 123 79 231 173 40 67 chr1 79642394 79642469 -202551195 + L2 LINE L2 3155 3227 -86 513 260 24 0 chr1 79642530 79642653 -202551011 + MIR SINE MIR 31 156 -106 1571 186 25 74 chr1 79642861 79643254 -202550410 - MLT1A2 LTR MaLR 0 374 1 427 259 154 55 chr1 79644335 79644536 -202549128 - MIR SINE MIR -9 253 33 348 236 0 0 chr1 79644610 79644720 -202548944 + CT-rich Low_complexity Low_complexity 1 110 0 307 289 156 15 chr1 79645020 79645155 -202548509 - MIR SINE MIR -73 189 36 21 0 0 0 chr1 79645226 79645247 -202548417 + AT_rich Low_complexity Low_complexity 1 21 0 501 235 174 0 chr1 79645649 79645798 -202547866 + MER5A DNA MER1_type 15 189 0 250 200 0 36 chr1 79646186 79646241 -202547423 - Tigger6 DNA MER2_type 0 1597 1545 1138 94 0 0 chr1 79646243 79646403 -202547261 + AluSg/x SINE Alu 150 309 -3 3701 238 32 5 chr1 79646413 79647225 -202546439 - MER21B LTR ERV1 -18 845 12 3079 171 31 15 chr1 79647250 79647866 -202545798 - Tigger6 DNA MER2_type -29 1568 943 2931 90 35 11 chr1 79647882 79648316 -202545348 - MLT2A1 LTR ERVL 0 444 1 411 304 15 20 chr1 79648448 79648643 -202545021 - Tigger3(Golem) DNA MER2_type -1668 1361 1227 1391 214 86 0 chr1 79648671 79648974 -202544690 - Tigger6 DNA MER2_type -1267 330 2 21 0 0 0 chr1 79649097 79649118 -202544546 + AT_rich Low_complexity Low_complexity 1 21 0 264 122 0 0 chr1 79649235 79649276 -202544388 + (T)n Simple_repeat Simple_repeat 1 41 0 194 313 0 0 chr1 79649454 79649502 -202544162 - L2 LINE L2 -15 3257 3210 301 330 66 0 chr1 79650035 79650126 -202543538 - MIR SINE MIR -165 97 1 2102 128 3 0 chr1 79650190 79650486 -202543178 + AluSx SINE Alu 3 299 -13 201 229 33 0 chr1 79650576 79650637 -202543027 + (TAA)n Simple_repeat Simple_repeat 3 65 0 640 278 63 55 chr1 79650797 79651052 -202542612 - Charlie8 DNA MER1_type -2136 281 25 435 298 76 0 chr1 79651095 79651226 -202542438 + MIR SINE MIR 43 183 -79 22 35 0 0 chr1 79652691 79652720 -202540944 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr1 79652800 79652832 -202540832 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr1 79653297 79653332 -202540332 + AT_rich Low_complexity Low_complexity 1 35 0 552 301 26 13 chr1 79653991 79654147 -202539517 + L3 LINE CR1 338 495 -1082 198 281 0 67 chr1 79654251 79654340 -202539324 - L2 LINE L2 -4 3309 3227 190 254 17 17 chr1 79654409 79654468 -202539196 + L2 LINE L2 3214 3272 0 24 0 0 0 chr1 79655113 79655137 -202538527 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr1 79655260 79655292 -202538372 + AT_rich Low_complexity Low_complexity 1 32 0 446 314 109 47 chr1 79655766 79656320 -202537344 - L2 LINE L2 -81 3232 2596 1916 112 49 0 chr1 79656901 79657186 -202536478 + AluSx SINE Alu 1 299 -13 260 310 158 16 chr1 79660424 79660608 -202533056 + MIR SINE MIR 5 214 -48 264 73 73 0 chr1 79660750 79660805 -202532859 + CT-rich Low_complexity Low_complexity 1 59 0 202 59 0 59 chr1 79664189 79664223 -202529441 + (TTATA)n Simple_repeat Simple_repeat 3 34 0 426 293 133 0 chr1 79664961 79665111 -202528553 + MIR SINE MIR 23 192 -70 64 75 0 0 chr1 79665111 79665245 -202528419 + AT_rich Low_complexity Low_complexity 1 134 0 181 252 103 56 chr1 79665466 79665573 -202528091 - MIR SINE MIR -46 216 105 437 232 116 79 chr1 79665695 79665859 -202527805 - MER69A DNA AcHobo -6 171 2 23 33 0 0 chr1 79666674 79666704 -202526960 + AT_rich Low_complexity Low_complexity 1 30 0 240 253 23 35 chr1 79666932 79667019 -202526645 + CT-rich Low_complexity Low_complexity 1 86 0 349 323 137 34 chr1 79669761 79670256 -202523408 + L2 LINE L2 2317 2862 -452 872 256 153 23 chr1 79670865 79671173 -202522491 + L2 LINE L2 2966 3313 0 2172 242 28 15 chr1 79671340 79671692 -202521972 - MER119 DNA MER1_type -31 552 189 2329 97 0 0 chr1 79671692 79672001 -202521663 - AluSc SINE Alu 0 309 1 2172 242 28 15 chr1 79672001 79672193 -202521471 - MER119 DNA MER1_type -394 189 1 232 215 140 65 chr1 79672211 79672304 -202521360 + MIR SINE MIR 42 141 -67 181 305 0 0 chr1 79672334 79672393 -202521271 + L2 LINE L2 3195 3253 -19 433 254 33 117 chr1 79673048 79673288 -202520376 + MIR SINE MIR 1 220 -42 303 140 0 0 chr1 79673329 79673379 -202520285 + (CAT)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr1 79673815 79673836 -202519828 + AT_rich Low_complexity Low_complexity 1 21 0 330 233 71 41 chr1 79673854 79673979 -202519685 - MIR3 SINE MIR -6 202 74 291 292 109 29 chr1 79674542 79674679 -202518985 + MIR3 SINE MIR 20 167 -41 189 0 0 0 chr1 79675530 79675551 -202518113 + (A)n Simple_repeat Simple_repeat 1 21 0 278 302 54 39 chr1 79675703 79675832 -202517832 + L2 LINE L2 3141 3271 -1 26 0 0 0 chr1 79676766 79676792 -202516872 + AT_rich Low_complexity Low_complexity 1 26 0 255 228 114 13 chr1 79676850 79676929 -202516735 + MIR SINE MIR 175 261 -1 213 302 38 38 chr1 79677486 79677592 -202516072 + MER5A DNA MER1_type 36 141 -48 663 207 99 70 chr1 79677641 79677854 -202515810 - L2 LINE L2 0 3313 3095 2029 110 31 10 chr1 79680443 79680735 -202512929 + AluSg SINE Alu 1 298 -12 24 96 0 0 chr1 79683137 79683210 -202510454 + AT_rich Low_complexity Low_complexity 1 73 0 226 291 0 0 chr1 79684267 79684346 -202509318 + T-rich Low_complexity Low_complexity 1 79 0 760 286 56 0 chr1 79685147 79685343 -202508321 + MER63A DNA MER1_type 1 207 -3 2352 129 22 0 chr1 79685555 79685911 -202507753 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr1 79687544 79687579 -202506085 + AT_rich Low_complexity Low_complexity 1 35 0 21 89 0 0 chr1 79687707 79687763 -202505901 + AT_rich Low_complexity Low_complexity 1 56 0 227 133 22 0 chr1 79687873 79687918 -202505746 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 416 275 80 0 chr1 79688135 79688273 -202505391 - MIR SINE MIR 0 262 114 24 0 0 0 chr1 79688992 79689016 -202504648 + AT_rich Low_complexity Low_complexity 1 24 0 282 330 0 0 chr1 79689997 79690103 -202503561 + (CATA)n Simple_repeat Simple_repeat 3 108 0 180 77 0 0 chr1 79690690 79690716 -202502948 + (CCA)n Simple_repeat Simple_repeat 1 26 0 35 24 0 0 chr1 79692261 79692303 -202501361 + AT_rich Low_complexity Low_complexity 1 42 0 233 278 11 78 chr1 79693432 79693522 -202500142 - L2 LINE L2 -4 3268 3185 743 270 132 43 chr1 79693612 79694299 -202499365 + L1ME2 LINE L1 5193 5949 -215 2229 71 29 26 chr1 79694484 79694794 -202498870 - AluY SINE Alu 0 311 1 1188 313 89 25 chr1 79695116 79695393 -202498271 - L2 LINE L2 -449 2865 2607 1958 138 149 11 chr1 79695393 79695769 -202497895 - MSTA LTR MaLR 0 428 1 1188 313 89 25 chr1 79695769 79696120 -202497544 - L2 LINE L2 -707 2607 2197 595 236 64 35 chr1 79696723 79696926 -202496738 - L2 LINE L2 -1265 2049 1841 21 71 0 0 chr1 79697130 79697172 -202496492 + AT_rich Low_complexity Low_complexity 1 42 0 2005 138 7 0 chr1 79697917 79698214 -202495450 - AluSx SINE Alu -13 299 1 462 264 122 0 chr1 79698485 79698633 -202495031 - MIR SINE MIR -12 250 85 369 0 0 0 chr1 79699379 79699420 -202494244 + (TG)n Simple_repeat Simple_repeat 1 41 0 33 56 0 0 chr1 79699877 79699931 -202493733 + AT_rich Low_complexity Low_complexity 1 54 0 1774 128 0 45 chr1 79699933 79700222 -202493442 + AluSq SINE Alu 3 278 -35 30 27 0 0 chr1 79701462 79701499 -202492165 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 79702312 79702341 -202491323 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr1 79704542 79704574 -202489090 + (TTG)n Simple_repeat Simple_repeat 2 33 0 453 294 134 11 chr1 79705187 79705374 -202488290 + MIR SINE MIR 52 261 -1 349 271 83 38 chr1 79706144 79706277 -202487387 - MIR SINE MIR -101 161 23 2860 206 30 39 chr1 79706307 79708619 -202485045 - L1MD1 LINE L1 -254 6382 3965 1099 180 23 18 chr1 79708619 79708836 -202484828 - AluJo SINE Alu -10 302 85 501 254 11 22 chr1 79708838 79709019 -202484645 - L1MD1 LINE L1 -2574 3966 3788 313 186 41 62 chr1 79708990 79709027 -202484637 - L1MD1 LINE L1 -4821 1719 1683 * 1983 117 31 55 chr1 79709027 79709411 -202484253 - THE1C LTR MaLR 0 375 1 313 186 41 62 chr1 79709411 79709470 -202484194 - L1MD1 LINE L1 -4857 1683 1625 6445 203 84 38 chr1 79709520 79709907 -202483757 - L1MD1 LINE L1 -4903 1637 1270 1731 167 7 3 chr1 79709907 79710195 -202483469 - AluJb SINE Alu -21 291 3 6445 203 84 38 chr1 79710195 79711371 -202482293 - L1MD1 LINE L1 -5270 1270 1 446 313 23 6 chr1 79711553 79711729 -202481935 - MARNA DNA Mariner -147 439 261 315 0 0 0 chr1 79712481 79712516 -202481148 + (CTG)n Simple_repeat Simple_repeat 2 36 0 583 294 44 10 chr1 79712861 79713065 -202480599 + MIR SINE MIR 2 212 -50 605 135 0 0 chr1 79713270 79713359 -202480305 + AluJb SINE Alu 206 294 -18 2010 133 0 7 chr1 79713815 79714116 -202479548 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 79714635 79714657 -202479007 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 79714752 79714782 -202478882 + AT_rich Low_complexity Low_complexity 1 30 0 1222 97 16 16 chr1 79717934 79718120 -202475544 + L1MA4A LINE L1 6113 6298 -5 491 261 117 33 chr1 79718240 79718420 -202475244 - MER63A DNA MER1_type -15 195 1 248 301 37 93 chr1 79718479 79718695 -202474969 + MIR SINE MIR 7 210 -52 366 23 0 0 chr1 79718702 79718745 -202474919 + (CA)n Simple_repeat Simple_repeat 1 43 0 435 264 170 61 chr1 79719543 79719590 -202474074 - MIR SINE MIR -12 250 209 928 220 6 0 chr1 79719590 79719767 -202473897 + MER45A DNA AcHobo 1 178 0 435 264 170 61 chr1 79719767 79719931 -202473733 - MIR SINE MIR -53 209 16 786 221 35 6 chr1 79720894 79721066 -202472598 - MER5B DNA MER1_type -1 177 1 442 307 53 26 chr1 79721306 79721495 -202472169 - MIR SINE MIR -46 216 23 32 0 0 0 chr1 79722114 79722146 -202471518 + AT_rich Low_complexity Low_complexity 1 32 0 2065 119 33 0 chr1 79722685 79722987 -202470677 - AluSx SINE Alu 0 312 1 204 231 0 0 chr1 79723395 79723447 -202470217 + L2 LINE L2 1912 1963 -1351 1190 259 144 25 chr1 79723466 79724034 -202469630 + L2 LINE L2 2231 2866 -448 4260 199 42 8 chr1 79724055 79725392 -202468272 - L1MB7 LINE L1 -9 6175 4793 479 260 102 133 chr1 79725415 79725815 -202467849 + L2 LINE L2 2921 3308 -5 321 26 0 0 chr1 79726013 79726051 -202467613 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 967 145 0 0 chr1 79726063 79726201 -202467463 - AluJo SINE Alu -49 263 126 1225 178 164 15 chr1 79726399 79726668 -202466996 + AluJb SINE Alu 1 309 -3 1457 194 29 19 chr1 79728177 79728486 -202465178 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 79731424 79731446 -202462218 + AT_rich Low_complexity Low_complexity 1 22 0 676 233 99 52 chr1 79733158 79733390 -202460274 - MIR SINE MIR 0 262 20 33 25 0 0 chr1 79735158 79735198 -202458466 + AT_rich Low_complexity Low_complexity 1 40 0 2445 65 3 0 chr1 79735867 79736173 -202457491 - AluSq SINE Alu 0 313 7 21 36 0 0 chr1 79736998 79737026 -202456638 + AT_rich Low_complexity Low_complexity 1 28 0 6834 23 0 0 chr1 79737369 79738166 -202455498 - L1PA2 LINE L1 -6 6149 5353 * 10944 30 0 0 chr1 79738151 79739471 -202454193 + L1P LINE L1 2917 4236 -1910 22 70 0 0 chr1 79739795 79739838 -202453826 + AT_rich Low_complexity Low_complexity 1 43 0 248 291 0 0 chr1 79740665 79740720 -202452944 + polypyrimidine Low_complexity Low_complexity 2 56 0 699 179 0 0 chr1 79742449 79742566 -202451098 - FLAM_C SINE Alu -25 118 2 652 203 166 18 chr1 79742583 79742800 -202450864 - MIR SINE MIR -1 261 13 2116 194 36 36 chr1 79742810 79742849 -202450815 + MLT1D LTR MaLR 1 39 -466 2035 159 0 0 chr1 79742849 79743150 -202450514 + AluJb SINE Alu 1 301 -11 2116 194 36 36 chr1 79743150 79743615 -202450049 + MLT1D LTR MaLR 38 505 0 982 273 95 10 chr1 79745248 79745742 -202447922 - L1ME4a LINE L1 -3 6118 5583 216 97 0 0 chr1 79745889 79745920 -202447744 + (CA)n Simple_repeat Simple_repeat 2 32 0 1903 166 72 17 chr1 79746047 79746450 -202447214 - L1MB7 LINE L1 -9 6175 5751 490 331 107 56 chr1 79746467 79746995 -202446669 + L2 LINE L2 2714 3257 -15 344 250 0 14 chr1 79747903 79747975 -202445689 + L2 LINE L2 3201 3271 -1 32 26 0 0 chr1 79747983 79748022 -202445642 + AT_rich Low_complexity Low_complexity 1 39 0 2404 97 0 0 chr1 79748852 79749221 -202444443 - AluSp SINE Alu 0 369 1 302 342 17 0 chr1 79749498 79749615 -202444049 + MIR3 SINE MIR 74 192 -16 1774 193 0 0 chr1 79749997 79750303 -202443361 + AluJo SINE Alu 1 306 -6 277 314 20 0 chr1 79753640 79753742 -202439922 - MER103 DNA DNA 0 166 63 25 0 0 0 chr1 79754021 79754046 -202439618 + AT_rich Low_complexity Low_complexity 1 25 0 1621 143 3 83 chr1 79754284 79754585 -202439079 + AluJo SINE Alu 4 280 -32 2507 133 22 48 chr1 79754922 79755340 -202438324 - MER65A LTR ERV1 0 445 38 207 0 0 0 chr1 79755340 79755363 -202438301 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2507 133 22 48 chr1 79755363 79755401 -202438263 - MER65A LTR ERV1 -407 38 1 263 363 121 44 chr1 79755468 79755650 -202438014 - L2 LINE L2 0 3272 3077 2516 57 0 0 chr1 79756166 79756465 -202437199 + AluY SINE Alu 2 300 -11 29 0 0 0 chr1 79757768 79757797 -202435867 + AT_rich Low_complexity Low_complexity 1 29 0 294 29 0 0 chr1 79757963 79757998 -202435666 + (CA)n Simple_repeat Simple_repeat 1 35 0 290 388 48 0 chr1 79758554 79758657 -202435007 + MIR3 SINE MIR 52 159 -49 202 338 13 83 chr1 79759266 79759423 -202434241 + L2 LINE L2 3107 3252 -20 290 307 34 0 chr1 79761421 79761509 -202432155 + L2 LINE L2 3182 3272 0 231 36 0 0 chr1 79762020 79762048 -202431616 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2109 101 17 13 chr1 79764141 79764439 -202429225 + AluSq SINE Alu 1 299 -14 520 114 0 0 chr1 79765124 79765203 -202428461 - MADE1 DNA Mariner 0 80 2 2807 10 0 0 chr1 79765409 79765715 -202427949 + AluYa5 SINE Alu 1 306 -5 37 52 0 0 chr1 79765823 79765881 -202427783 + AT_rich Low_complexity Low_complexity 1 58 0 2240 127 0 0 chr1 79767850 79768158 -202425506 - AluSx SINE Alu -3 309 2 197 293 0 0 chr1 79768559 79768600 -202425064 - L2 LINE L2 -12 3301 3261 2181 114 0 3 chr1 79768861 79769160 -202424504 + AluSx SINE Alu 1 298 -14 2145 105 41 0 chr1 79769629 79769924 -202423740 + AluSx SINE Alu 1 307 -5 2030 134 3 0 chr1 79770541 79770868 -202422796 - AluSx SINE Alu 0 328 1 278 229 62 56 chr1 79770869 79771013 -202422651 - MER104 DNA Tc2 -35 145 1 682 135 40 0 chr1 79771053 79771179 -202422485 + AluSp SINE Alu 1 131 -182 291 332 33 52 chr1 79771695 79771906 -202421758 + L2 LINE L2 2851 3057 -215 320 240 13 27 chr1 79772107 79772182 -202421482 + L2 LINE L2 3227 3300 -13 196 88 88 0 chr1 79772200 79772234 -202421430 + L2 LINE L2 3261 3297 -16 2302 89 0 22 chr1 79774288 79774604 -202419060 - AluSg SINE Alu -1 309 1 184 284 60 0 chr1 79774739 79774806 -202418858 - L3b LINE CR1 -101 1482 1412 1967 99 7 0 chr1 79775055 79775327 -202418337 - AluSx SINE Alu -11 301 28 303 49 0 0 chr1 79777887 79777928 -202415736 + (TG)n Simple_repeat Simple_repeat 2 42 0 190 328 86 16 chr1 79778297 79778425 -202415239 - L2 LINE L2 0 3272 3136 2194 116 16 0 chr1 79778551 79778854 -202414810 - AluJo SINE Alu -4 308 1 21 0 0 0 chr1 79785653 79785674 -202407990 + AT_rich Low_complexity Low_complexity 1 21 0 1810 113 9 70 chr1 79786262 79786591 -202407073 - AluSq SINE Alu -4 309 1 2064 141 0 0 chr1 79787849 79788148 -202405516 - AluSx SINE Alu -7 305 7 676 266 5 59 chr1 79788205 79788427 -202405237 - MIR SINE MIR -2 260 51 3103 206 36 3 chr1 79788871 79789503 -202404161 - MER82 DNA MER2_type 0 653 1 248 271 0 0 chr1 79789676 79789724 -202403940 - L2 LINE L2 -4 3268 3221 181 287 279 0 chr1 79789799 79789921 -202403743 - L2 LINE L2 -201 3071 2916 180 0 0 0 chr1 79789967 79789987 -202403677 + (A)n Simple_repeat Simple_repeat 1 20 0 467 261 46 8 chr1 79791583 79791713 -202401951 + MIR SINE MIR 92 226 -36 2213 97 10 13 chr1 79791739 79792048 -202401616 - AluSx SINE Alu -4 308 1 843 291 70 8 chr1 79792101 79792342 -202401322 + MIR SINE MIR 1 256 -6 338 376 45 38 chr1 79792377 79792643 -202401021 + L2 LINE L2 2765 3037 -276 22 0 0 0 chr1 79793087 79793109 -202400555 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 79793428 79793451 -202400213 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 79794622 79794650 -202399014 + AT_rich Low_complexity Low_complexity 1 28 0 2225 109 0 3 chr1 79794908 79795201 -202398463 + AluSq SINE Alu 1 292 -21 1790 169 30 0 chr1 79795529 79795825 -202397839 + AluJb SINE Alu 1 305 -7 415 323 131 0 chr1 79796624 79796822 -202396842 - MIR SINE MIR -38 224 1 27 62 0 0 chr1 79797384 79797432 -202396232 + AT_rich Low_complexity Low_complexity 1 48 0 30 45 0 0 chr1 79798097 79798141 -202395523 + AT_rich Low_complexity Low_complexity 1 44 0 184 312 280 11 chr1 79798174 79798267 -202395397 + MIR3 SINE MIR 9 126 -82 270 184 195 58 chr1 79798407 79798494 -202395170 - Tigger7 DNA MER2_type 0 2587 2489 * 1328 170 17 94 chr1 79798492 79798780 -202394884 - Tigger7 DNA MER2_type -2220 267 2 286 374 20 0 chr1 79799518 79799617 -202394047 + L2 LINE L2 3169 3269 -3 1947 154 13 0 chr1 79799651 79799957 -202393707 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 79800411 79800434 -202393230 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 30 chr1 79800991 79801010 -202392654 + AT_rich Low_complexity Low_complexity 1 20 -12 769 176 0 8 chr1 79801010 79801141 -202392523 + FLAM_C SINE Alu 1 130 -3 22 0 0 30 chr1 79801141 79801154 -202392510 + AT_rich Low_complexity Low_complexity 20 32 0 26 30 0 0 chr1 79801428 79801461 -202392203 + AT_rich Low_complexity Low_complexity 1 33 0 207 103 0 0 chr1 79802113 79802142 -202391522 + L2 LINE L2 3277 3305 -8 503 244 30 0 chr1 79802699 79802830 -202390834 + HAL1 LINE L1 1328 1462 -1045 2400 54 10 0 chr1 79802919 79803213 -202390451 - AluY SINE Alu -14 297 1 1196 73 18 0 chr1 79803244 79803408 -202390256 + AluY SINE Alu 145 311 0 843 184 18 0 chr1 79804198 79804361 -202389303 + MER5A DNA MER1_type 9 174 -15 339 310 0 0 chr1 79804481 79804568 -202389096 - L2 LINE L2 0 3272 3186 1719 215 55 29 chr1 79804742 79804894 -202388770 - MLT1D LTR MaLR -2 503 357 2107 106 0 40 chr1 79804894 79805216 -202388448 - AluSc SINE Alu 0 309 1 1719 215 55 29 chr1 79805216 79805551 -202388113 - MLT1D LTR MaLR -148 357 3 1104 197 85 87 chr1 79805706 79805933 -202387731 - MLT1A1 LTR MaLR 0 365 138 2247 88 3 16 chr1 79805933 79806239 -202387425 + AluSp SINE Alu 1 302 -11 1104 197 85 87 chr1 79806239 79806377 -202387287 - MLT1A1 LTR MaLR -227 138 1 25 65 0 0 chr1 79806636 79806682 -202386982 + AT_rich Low_complexity Low_complexity 1 46 0 446 192 20 30 chr1 79807606 79807705 -202385959 - MER5B DNA MER1_type -59 119 22 21 0 0 0 chr1 79808185 79808206 -202385458 + AT_rich Low_complexity Low_complexity 1 21 0 1543 205 13 3 chr1 79808209 79808512 -202385152 + AluJo SINE Alu 3 308 -4 222 208 0 0 chr1 79808724 79808772 -202384892 + A-rich Low_complexity Low_complexity 1 48 0 228 67 0 0 chr1 79809060 79809090 -202384574 + (A)n Simple_repeat Simple_repeat 1 30 0 2006 134 10 10 chr1 79809107 79809412 -202384252 + AluSx SINE Alu 1 305 -7 2179 111 0 7 chr1 79809446 79809744 -202383920 - AluSx SINE Alu -16 296 1 2297 258 67 58 chr1 79809745 79810549 -202383115 + L1M4 LINE L1 113 923 -5936 8653 205 62 22 chr1 79810617 79810858 -202382806 + L1M4 LINE L1 3668 3898 -3091 2298 120 10 44 chr1 79810858 79811242 -202382422 + MER83C LTR ERV1 3 373 0 8653 205 62 22 chr1 79811242 79813766 -202379898 + L1M4 LINE L1 3898 6542 -447 474 284 28 57 chr1 79813766 79813805 -202379859 - HAL1 LINE L1 -2300 207 168 1602 212 55 6 chr1 79813805 79814149 -202379515 + MLT1A1 LTR MaLR 1 361 -4 474 284 28 57 chr1 79814149 79814320 -202379344 - HAL1 LINE L1 -2339 168 3 235 322 33 0 chr1 79814612 79814702 -202378962 + MLT1G1 LTR MaLR 487 579 -16 2500 208 78 17 chr1 79816169 79816769 -202376895 + L1ME1 LINE L1 5525 6161 -5 248 278 78 99 chr1 79817107 79817298 -202376366 + MER5A DNA MER1_type 3 189 0 2304 92 0 3 chr1 79818080 79818383 -202375281 + AluSg SINE Alu 1 302 -8 23 0 0 0 chr1 79818412 79818435 -202375229 + AT_rich Low_complexity Low_complexity 1 23 0 3803 131 74 59 chr1 79818494 79818823 -202374841 + Tigger2 DNA MER2_type 1 324 -2394 2267 97 0 0 chr1 79818823 79819121 -202374543 + AluSx SINE Alu 1 298 -14 3803 131 74 59 chr1 79819121 79819537 -202374127 + Tigger2 DNA MER2_type 324 757 -1961 2617 146 7 34 chr1 79819594 79820040 -202373624 + Tigger2a DNA MER2_type 1 434 0 23 68 0 0 chr1 79820464 79820508 -202373156 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr1 79820966 79821009 -202372655 + AT_rich Low_complexity Low_complexity 1 43 0 1558 138 0 24 chr1 79821050 79821297 -202372367 + AluJb SINE Alu 23 263 -49 1930 138 9 19 chr1 79821950 79822269 -202371395 - 7SLRNA srpRNA srpRNA -3 317 2 246 105 0 0 chr1 79823058 79823096 -202370568 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr1 79823968 79823996 -202369668 + AT_rich Low_complexity Low_complexity 1 28 0 1225 165 70 4 chr1 79824102 79824345 -202369319 + L1MD3 LINE L1 7729 7987 -8 23 0 0 0 chr1 79824751 79824774 -202368890 + AT_rich Low_complexity Low_complexity 1 23 0 224 375 19 10 chr1 79825259 79825363 -202368301 + MIR SINE MIR 30 134 -128 1673 194 10 7 chr1 79825374 79825683 -202367981 - AluJb SINE Alu -2 310 1 1975 117 7 13 chr1 79825804 79826102 -202367562 + AluSx SINE Alu 9 304 -8 2468 104 6 3 chr1 79827081 79827435 -202366229 + THE1A LTR MaLR 1 355 0 25 51 0 0 chr1 79828828 79828867 -202364797 + AT_rich Low_complexity Low_complexity 1 39 0 1801 157 0 20 chr1 79829372 79829666 -202363998 + AluJo SINE Alu 1 288 -24 531 0 0 0 chr1 79829668 79829727 -202363937 + (GAGAA)n Simple_repeat Simple_repeat 3 61 0 263 253 133 0 chr1 79829912 79829987 -202363677 - MIR3 SINE MIR -3 205 121 1491 155 4 4 chr1 79830283 79830528 -202363136 + AluJo SINE Alu 1 245 -67 667 242 77 11 chr1 79830610 79830792 -202362872 - MIR SINE MIR -65 197 4 189 0 0 0 chr1 79831128 79831149 -202362515 + (A)n Simple_repeat Simple_repeat 1 21 0 558 326 17 6 chr1 79831550 79831722 -202361942 - MIR SINE MIR -46 216 43 1484 186 22 19 chr1 79832228 79832539 -202361125 + AluJo SINE Alu 1 312 0 2557 162 7 2 chr1 79833706 79834169 -202359495 - L1P LINE L1 -1400 4746 4282 4334 116 5 2 chr1 79834169 79834811 -202358853 + L1PA14 LINE L1 5515 6161 0 296 326 0 0 chr1 79834813 79834902 -202358762 - L1MC5 LINE L1 -76 7885 7797 5504 216 79 81 chr1 79834906 79837474 -202356190 + L1ME1 LINE L1 3052 5602 -564 2074 104 3 10 chr1 79837474 79837763 -202355901 - AluSx SINE Alu -23 289 3 5504 216 79 81 chr1 79837763 79837853 -202355811 + L1ME1 LINE L1 5602 5691 -475 511 206 11 0 chr1 79837853 79837945 -202355719 + LTR47A LTR ERVL 274 366 -86 1820 224 33 27 chr1 79837951 79838097 -202355567 + L1ME1 LINE L1 5676 5820 -346 1738 189 3 3 chr1 79838097 79838398 -202355266 + AluJo SINE Alu 1 301 -11 1820 224 33 27 chr1 79838398 79838734 -202354930 + L1ME1 LINE L1 5820 6161 -5 870 235 10 5 chr1 79838850 79839054 -202354610 + MER3 DNA MER1_type 1 205 -4 183 42 0 0 chr1 79839111 79839135 -202354529 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1625 154 30 34 chr1 79839141 79839408 -202354256 - AluJo SINE Alu -46 266 1 1063 99 0 0 chr1 79839627 79839758 -202353906 + AluSq/x SINE Alu 1 131 -182 720 211 0 0 chr1 79839758 79839891 -202353773 - AluJo/FLAM SINE Alu -169 133 1 340 224 171 115 chr1 79840513 79840698 -202352966 + L1ME4a LINE L1 5725 5898 -223 1676 196 0 7 chr1 79840698 79840984 -202352680 + AluJo SINE Alu 1 284 -28 340 224 171 115 chr1 79840984 79841045 -202352619 + L1ME4a LINE L1 5898 5954 -167 342 0 0 0 chr1 79841045 79841083 -202352581 + (CA)n Simple_repeat Simple_repeat 1 38 0 340 224 171 115 chr1 79841083 79841210 -202352454 + L1ME4a LINE L1 5954 6120 -1 2816 108 18 25 chr1 79841257 79841694 -202351970 + Tigger2a DNA MER2_type 1 434 0 1462 207 24 3 chr1 79842014 79842304 -202351360 + AluJo SINE Alu 1 296 -16 250 220 0 0 chr1 79842631 79842681 -202350983 + GA-rich Low_complexity Low_complexity 2 51 0 1911 152 14 0 chr1 79842721 79843011 -202350653 + AluJo SINE Alu 3 296 -16 4606 182 43 18 chr1 79843360 79843520 -202350144 + L1MC2 LINE L1 5288 5442 -902 2216 90 0 14 chr1 79843520 79843835 -202349829 + AluSp SINE Alu 1 311 0 4606 182 43 18 chr1 79843835 79844686 -202348978 + L1MC2 LINE L1 5442 6326 -18 1721 146 7 21 chr1 79844733 79845013 -202348651 - AluJo SINE Alu -25 287 12 864 154 0 0 chr1 79845243 79845366 -202348298 - FAM SINE Alu -30 155 33 263 254 229 0 chr1 79845440 79845558 -202348106 - MIR SINE MIR -14 248 104 226 323 141 0 chr1 79845809 79845908 -202347756 - L2 LINE L2 0 3313 3201 580 261 84 29 chr1 79846019 79846257 -202347407 - L2 LINE L2 0 3313 3063 252 0 0 0 chr1 79846562 79846590 -202347074 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 247 84 78 chr1 79848074 79848228 -202345436 + MIR SINE MIR 23 177 -85 180 191 79 127 chr1 79848358 79848421 -202345243 - L2 LINE L2 -5 3308 3249 2203 116 3 3 chr1 79848711 79849021 -202344643 - AluSx SINE Alu -2 310 1 461 267 30 23 chr1 79849185 79849316 -202344348 - MIR SINE MIR -121 141 10 1535 160 56 14 chr1 79849543 79849831 -202343833 - AluJo SINE Alu -2 310 11 396 188 0 14 chr1 79849831 79849900 -202343764 - AluJ/FLAM SINE Alu -234 68 1 212 59 29 0 chr1 79850148 79850182 -202343482 + (TG)n Simple_repeat Simple_repeat 1 35 0 1749 144 3 18 chr1 79850182 79850467 -202343197 - AluSx SINE Alu -31 281 1 1105 186 110 69 chr1 79851438 79851728 -202341936 - AluJb SINE Alu 0 302 1 1499 162 40 70 chr1 79851993 79852260 -202341404 - AluJo SINE Alu -19 293 34 1771 171 0 7 chr1 79852260 79852541 -202341123 + AluJb SINE Alu 1 279 -33 1499 162 40 70 chr1 79852541 79852575 -202341089 - AluJo SINE Alu -278 34 1 189 0 0 0 chr1 79854065 79854086 -202339578 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 2214 116 0 0 chr1 79854091 79854384 -202339280 - AluSx SINE Alu -17 295 3 1364 146 108 59 chr1 79854617 79854904 -202338760 + AluJo SINE Alu 1 301 -11 313 262 139 25 chr1 79854940 79855062 -202338602 - MIR SINE MIR -2 260 125 524 235 49 80 chr1 79855357 79855519 -202338145 + MIR SINE MIR 1 157 -105 561 239 133 37 chr1 79855522 79855710 -202337954 - MIR SINE MIR -44 218 13 25 31 0 0 chr1 79856610 79856642 -202337022 + AT_rich Low_complexity Low_complexity 1 32 0 2110 139 3 0 chr1 79856724 79857027 -202336637 - AluSx SINE Alu -8 304 1 2084 113 3 17 chr1 79857614 79857915 -202335749 - AluSp SINE Alu -16 297 1 1840 166 7 7 chr1 79858264 79858560 -202335104 - AluJb SINE Alu -14 298 3 439 335 81 11 chr1 79858735 79858920 -202334744 + L2 LINE L2 2868 3065 -248 2231 103 7 0 chr1 79858984 79859286 -202334378 - AluSp SINE Alu -9 304 1 224 324 9 36 chr1 79859289 79859400 -202334264 + L2 LINE L2 3168 3275 -38 245 271 107 49 chr1 79859669 79859791 -202333873 - MIR3 SINE MIR -19 189 61 1998 82 89 14 chr1 79859817 79860097 -202333567 - AluY SINE Alu -10 301 1 204 297 33 66 chr1 79860459 79860550 -202333114 + L2 LINE L2 3169 3256 -16 276 237 26 0 chr1 79860666 79860742 -202332922 - MER2 DNA MER2_type 0 345 268 363 148 261 0 chr1 79860773 79860823 -202332841 - MER2 DNA MER2_type -139 206 170 1289 149 26 13 chr1 79860823 79861051 -202332613 + MER46A DNA MER2_type 2 232 -4 363 148 261 0 chr1 79861051 79861088 -202332576 - MER2 DNA MER2_type -175 170 96 1397 157 153 7 chr1 79861110 79861391 -202332273 + MER2 DNA MER2_type 14 335 -10 569 186 0 10 chr1 79861407 79861504 -202332160 - MER2 DNA MER2_type -248 97 2 180 298 21 0 chr1 79861899 79861946 -202331718 - L2 LINE L2 -17 3255 3208 2008 106 7 7 chr1 79862395 79862687 -202330977 + AluSx SINE Alu 1 292 -20 268 200 13 40 chr1 79863289 79863364 -202330300 + (CGG)n Simple_repeat Simple_repeat 3 75 0 183 162 0 0 chr1 79863522 79863559 -202330105 + (CGG)n Simple_repeat Simple_repeat 1 37 0 1369 137 113 90 chr1 79865749 79866084 -202327580 - MER2 DNA MER2_type 0 344 2 403 264 96 22 chr1 79866117 79866295 -202327369 + L2 LINE L2 2958 3148 -165 278 325 162 21 chr1 79866695 79866886 -202326778 - MIR SINE MIR -9 253 36 2086 85 0 0 chr1 79867776 79868034 -202325630 + AluSp SINE Alu 39 296 -17 185 315 19 19 chr1 79868435 79868489 -202325175 - L2 LINE L2 -25 3247 3194 329 85 0 17 chr1 79875026 79875085 -202318579 + (TTTTG)n Simple_repeat Simple_repeat 2 59 0 1966 121 18 0 chr1 79875094 79875367 -202318297 - AluSx SINE Alu -32 280 3 490 225 72 81 chr1 79875652 79875861 -202317803 - LTR41 LTR ERVL -15 758 552 489 250 17 51 chr1 79875995 79876171 -202317493 - LTR41 LTR ERVL -589 184 15 532 187 75 118 chr1 79876286 79876473 -202317191 + MER58A DNA MER1_type 46 224 0 220 27 54 0 chr1 79877149 79877186 -202316478 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2195 123 3 0 chr1 79878149 79878459 -202315205 - AluY SINE Alu 0 311 1 2144 89 58 0 chr1 79878622 79878915 -202314749 - AluY SINE Alu -1 310 1 460 292 80 0 chr1 79879528 79879665 -202313999 + MER20 DNA MER1_type 51 198 -21 1808 163 13 3 chr1 79880915 79881221 -202312443 - AluJb SINE Alu -3 309 1 2526 201 83 67 chr1 79881599 79882402 -202311262 - Charlie1a DNA MER1_type -639 816 1 2270 100 13 0 chr1 79882600 79882901 -202310763 - AluSp SINE Alu -8 305 1 2120 85 14 7 chr1 79883717 79884011 -202309653 + AluSg SINE Alu 1 296 -14 1237 166 0 37 chr1 79884216 79884433 -202309231 - AluJb SINE Alu -103 209 1 256 277 62 45 chr1 79884646 79884758 -202308906 - L2 LINE L2 -5 3267 3154 673 191 75 143 chr1 79885003 79885255 -202308409 + MER8 DNA MER2_type 1 235 -4 233 316 184 6 chr1 79885274 79885448 -202308216 - MIR SINE MIR -38 224 20 21 0 0 0 chr1 79885567 79885588 -202308076 + AT_rich Low_complexity Low_complexity 1 21 0 661 183 17 0 chr1 79885598 79885718 -202307946 + FLAM_C SINE Alu 1 122 -11 335 337 128 35 chr1 79887567 79887825 -202305839 - L2 LINE L2 -466 2848 2567 2781 189 126 26 chr1 79889364 79890354 -202303310 + L1MB8 LINE L1 4967 6062 -116 2077 127 0 10 chr1 79891389 79891689 -202301975 - AluJb SINE Alu -15 297 1 261 227 31 31 chr1 79892199 79892296 -202301368 + GA-rich Low_complexity Low_complexity 3 99 0 231 145 194 0 chr1 79894529 79894591 -202299073 - MER116 DNA Mariner -6 74 1 487 108 237 11 chr1 79895078 79895171 -202298493 - Tigger1 DNA MER2_type 0 2418 2305 1471 148 76 8 chr1 79895172 79895435 -202298229 + AluJo SINE Alu 1 281 -31 423 0 0 0 chr1 79896340 79896387 -202297277 + (TG)n Simple_repeat Simple_repeat 1 47 0 1877 94 36 33 chr1 79896387 79896662 -202297002 - AluSc SINE Alu -33 276 1 2140 103 10 32 chr1 79896862 79897173 -202296491 + AluSx SINE Alu 1 304 -8 2228 70 3 3 chr1 79897306 79897593 -202296071 + AluY SINE Alu 1 287 -24 1629 170 27 27 chr1 79897605 79897899 -202295765 + AluJb SINE Alu 4 297 -15 2457 47 0 7 chr1 79898005 79898302 -202295362 + AluY SINE Alu 1 295 -16 1730 215 80 22 chr1 79898381 79898833 -202294831 - MLT2F LTR ERVL 0 663 186 5648 138 55 72 chr1 79898881 79899095 -202294569 + Tigger3b DNA MER2_type 2 218 -2810 2462 53 3 0 chr1 79899095 79899395 -202294269 + AluY SINE Alu 1 301 -10 5648 138 55 72 chr1 79899395 79899727 -202293937 + Tigger3b DNA MER2_type 218 554 -2474 1912 109 40 0 chr1 79899727 79900001 -202293663 + AluSc SINE Alu 1 285 -24 5648 138 55 72 chr1 79900001 79900149 -202293515 + Tigger3b DNA MER2_type 554 703 -2325 1968 97 0 8 chr1 79900149 79900407 -202293257 + AluSx SINE Alu 33 288 -24 183 42 0 0 chr1 79900415 79900439 -202293225 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5648 138 55 72 chr1 79900439 79900984 -202292680 + Tigger3b DNA MER2_type 710 1231 0 311 173 58 0 chr1 79901648 79901700 -202291964 - MER8 DNA MER2_type -16 223 169 262 196 232 0 chr1 79901676 79901732 -202291932 + Tigger2 DNA MER2_type 2650 2718 0 * 186 150 0 0 chr1 79904186 79904226 -202289438 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr1 79904764 79904792 -202288872 + AT_rich Low_complexity Low_complexity 1 28 0 827 153 0 0 chr1 79905498 79905616 -202288048 + FLAM_C SINE Alu 1 118 -25 28 29 0 0 chr1 79905616 79905651 -202288013 + AT_rich Low_complexity Low_complexity 1 35 0 1185 197 128 13 chr1 79905898 79906023 -202287641 + MER58B DNA MER1_type 1 110 -2310 2409 97 0 0 chr1 79906023 79906332 -202287332 + AluSx SINE Alu 1 309 -3 1185 197 128 13 chr1 79906332 79906510 -202287154 + MER58B DNA MER1_type 110 339 -2 964 301 100 3 chr1 79906510 79907071 -202286593 - L2 LINE L2 -51 3262 2636 202 191 59 0 chr1 79907079 79907147 -202286517 - L2 LINE L2 -1241 2073 2002 326 113 0 0 chr1 79907316 79907369 -202286295 - L1MD1 LINE L1 -13 6623 6571 1871 178 0 9 chr1 79907369 79907684 -202285980 + AluJb SINE Alu 1 312 0 407 162 29 9 chr1 79907684 79907789 -202285875 + GA-rich Low_complexity Low_complexity 3 109 0 1885 177 73 58 chr1 79907791 79908323 -202285341 - L1MD1 LINE L1 -65 6571 6032 287 203 0 0 chr1 79908335 79908399 -202285265 - L1MD1 LINE L1 -1467 5073 5010 3122 214 31 7 chr1 79908417 79909188 -202284476 - L1MD1 LINE L1 -3148 3392 2603 961 157 11 45 chr1 79909189 79909367 -202284297 - AluSg/x SINE Alu -4 308 137 1956 119 50 40 chr1 79909368 79909771 -202283893 - L1MD1 LINE L1 -3927 2613 2207 2163 94 29 0 chr1 79910014 79910290 -202283374 - AluSq SINE Alu -28 285 2 1380 0 0 19 chr1 79910715 79910876 -202282788 - L1PA3 LINE L1 0 6155 5998 1911 132 55 25 chr1 79912272 79912599 -202281065 - MER1B DNA MER1_type 0 337 1 446 235 262 5 chr1 79912840 79913027 -202280637 - HAL1b LINE L1 -415 933 699 442 267 52 47 chr1 79913268 79913440 -202280224 - HAL1b LINE L1 -702 646 474 434 265 171 36 chr1 79913452 79913761 -202279903 - HAL1b LINE L1 -919 429 79 2189 99 20 0 chr1 79914057 79914349 -202279315 - AluSp SINE Alu -15 298 1 314 207 69 69 chr1 79914390 79914535 -202279129 + MER104 DNA Tc2 1 145 -35 2031 134 3 0 chr1 79914536 79914863 -202278801 + AluSx SINE Alu 1 328 0 1925 115 75 23 chr1 79915185 79915532 -202278132 - LTR7 LTR ERV1 -85 365 1 3785 102 5 12 chr1 79915532 79916093 -202277571 - HERVH LTR ERV1 0 7713 7157 2365 165 9 0 chr1 79916086 79916505 -202277159 - HERVH LTR ERV1 -1697 6016 5594 * 1581 143 4 8 chr1 79916502 79916753 -202276911 - HERVH LTR ERV1 -2564 5149 4900 * 5833 154 19 14 chr1 79916757 79918322 -202275342 - HERVH LTR ERV1 -2320 4209 3141 5277 118 0 30 chr1 79918302 79919159 -202274505 - HERVH LTR ERV1 -4718 2995 2165 * 2273 80 13 6 chr1 79919584 79919895 -202273769 + AluSq SINE Alu 1 313 0 1895 157 0 3 chr1 79920089 79920388 -202273276 - AluJb SINE Alu -10 302 5 659 293 98 50 chr1 79920394 79920790 -202272874 - Charlie8 DNA MER1_type -1918 499 85 497 299 4 111 chr1 79921352 79921384 -202272280 + MIR SINE MIR 5 39 -223 1346 215 16 23 chr1 79921384 79921691 -202271973 + AluJo SINE Alu 1 305 -7 497 299 4 111 chr1 79921691 79921919 -202271745 + MIR SINE MIR 39 237 -25 228 158 0 0 chr1 79922581 79922619 -202271045 + L2 LINE L2 3171 3208 -64 424 272 228 7 chr1 79924050 79924506 -202269158 - L1M4 LINE L1 -2927 3219 2663 256 192 19 0 chr1 79924689 79924793 -202268871 + (TA)n Simple_repeat Simple_repeat 1 106 0 2148 117 0 0 chr1 79924795 79925078 -202268586 - AluSx SINE Alu -21 291 9 286 278 112 10 chr1 79925085 79925398 -202268266 - L1M4 LINE L1 -3658 2488 2144 633 303 31 8 chr1 79925496 79925750 -202267914 - MIR SINE MIR 0 262 3 789 275 153 24 chr1 79925956 79926367 -202267297 + MLT1G LTR MaLR 127 590 0 4089 146 18 3 chr1 79927114 79927794 -202265870 + L1PA16 LINE L1 5460 6149 -17 313 332 101 49 chr1 79927926 79928354 -202265310 - LTR67 LTR ERVL -52 505 56 620 262 84 59 chr1 79928732 79929603 -202264061 + HAL1b LINE L1 281 1223 -125 334 284 22 87 chr1 79929610 79929793 -202263871 + HAL1b LINE L1 473 643 -705 259 186 85 0 chr1 79929837 79929896 -202263768 + MER110A LTR ERV1 1 64 -404 1923 108 0 25 chr1 79929955 79930232 -202263432 + AluSc SINE Alu 1 270 -39 778 136 17 28 chr1 79930256 79930432 -202263232 + GA-rich Low_complexity Low_complexity 1 174 0 1673 206 71 11 chr1 79930591 79931029 -202262635 + MER110A LTR ERV1 4 467 -1 1934 91 68 0 chr1 79931210 79931473 -202262191 + AluY SINE Alu 1 281 -30 1764 179 3 10 chr1 79931561 79931863 -202261801 + AluJb SINE Alu 2 301 -11 201 309 127 55 chr1 79932001 79932111 -202261553 + MER5A DNA MER1_type 72 189 0 413 320 41 31 chr1 79932362 79932556 -202261108 + L2 LINE L2 3117 3312 -1 524 235 59 0 chr1 79932904 79933006 -202260658 + MER58C DNA MER1_type 2 109 -106 21 0 0 0 chr1 79933139 79933160 -202260504 + AT_rich Low_complexity Low_complexity 1 21 0 977 104 0 0 chr1 79935076 79935201 -202258463 - AluSq/x SINE Alu -187 125 1 348 221 36 79 chr1 79935202 79935342 -202258322 + MER58C DNA MER1_type 78 211 -4 1042 294 56 0 chr1 79935343 79935700 -202257964 - ERVL LTR ERVL -3058 2706 2330 391 206 155 10 chr1 79935741 79935838 -202257826 - MER81 DNA DNA -3 111 1 389 227 11 0 chr1 79936210 79936298 -202257366 - MLT2E LTR ERVL -8 620 532 432 125 0 0 chr1 79937459 79937523 -202256141 + AluJ/FLAM SINE Alu 1 64 -248 21 36 0 0 chr1 79938481 79938509 -202255155 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 79938836 79938858 -202254806 + AT_rich Low_complexity Low_complexity 1 22 0 201 315 0 19 chr1 79939581 79939635 -202254029 + L2 LINE L2 3246 3298 -15 1414 212 3 24 chr1 79939650 79939943 -202253721 - AluJo SINE Alu -15 287 1 2191 144 0 0 chr1 79940338 79940644 -202253020 + AluSx SINE Alu 2 307 -5 194 364 21 28 chr1 79940644 79940787 -202252877 - L2 LINE L2 -193 3079 2938 1061 280 62 36 chr1 79940945 79941448 -202252216 - LTR33 LTR ERVL -5 516 1 2450 41 0 3 chr1 79941557 79941849 -202251815 + AluY SINE Alu 2 292 -19 223 337 122 23 chr1 79941877 79942049 -202251615 - L2 LINE L2 -716 2598 2410 478 176 84 61 chr1 79942061 79942192 -202251472 + AluJb SINE Alu 1 134 -178 2024 131 3 0 chr1 79942573 79942864 -202250800 + AluSx SINE Alu 1 292 -20 660 208 140 45 chr1 79942951 79943356 -202250308 + MLT1A1 LTR MaLR 2 363 -2 532 283 70 13 chr1 79943357 79943587 -202250077 - MLT1L LTR MaLR -6 609 367 337 203 169 8 chr1 79943673 79943791 -202249873 + L1ME4a LINE L1 5984 6120 -1 392 288 9 0 chr1 79944797 79944908 -202248756 + MIR SINE MIR 32 143 -119 4361 126 34 78 chr1 79945042 79945965 -202247699 - L1MA6 LINE L1 0 6300 5419 22 35 0 0 chr1 79946679 79946708 -202246956 + AT_rich Low_complexity Low_complexity 1 29 0 1477 128 29 32 chr1 79946798 79947123 -202246541 - L1MA6 LINE L1 -743 5403 5105 6046 125 41 0 chr1 79947124 79948098 -202245566 - Tigger1 DNA MER2_type -1049 1369 356 581 141 33 41 chr1 79948073 79948194 -202245470 - LTR23 LTR ERV1 -317 120 1 * 2355 94 0 13 chr1 79948314 79948623 -202245041 + AluSg SINE Alu 1 305 -5 254 311 100 83 chr1 79949283 79949634 -202244030 - L2 LINE L2 -486 2828 2472 447 252 72 9 chr1 79950085 79950196 -202243468 - MER5A DNA MER1_type 0 189 72 289 322 63 40 chr1 79950223 79950334 -202243330 + MER5B DNA MER1_type 1 119 -59 2311 90 0 16 chr1 79950334 79950644 -202243020 - AluY SINE Alu -6 305 1 289 322 63 40 chr1 79950644 79950706 -202242958 + MER5B DNA MER1_type 119 178 0 283 329 0 0 chr1 79950706 79950788 -202242876 - MIR SINE MIR -80 182 101 736 229 50 15 chr1 79951449 79951650 -202242014 - MIR SINE MIR -49 213 6 2221 130 0 0 chr1 79952682 79952982 -202240682 - AluSx SINE Alu -8 304 5 480 266 257 31 chr1 79953012 79953810 -202239854 - HAL1 LINE L1 0 2507 1530 244 222 16 0 chr1 79953814 79953877 -202239787 + L2 LINE L2 3250 3313 0 865 204 28 6 chr1 79954058 79954239 -202239425 + MER5A DNA MER1_type 3 187 -2 234 327 0 36 chr1 79954308 79954418 -202239246 - HAL1 LINE L1 -1811 696 591 2284 91 7 3 chr1 79954731 79955086 -202238578 + AluSx SINE Alu 1 356 0 1574 186 10 28 chr1 79955771 79956061 -202237603 + AluJb SINE Alu 3 287 -25 24 0 0 0 chr1 79956068 79956092 -202237572 + AT_rich Low_complexity Low_complexity 1 24 0 1164 237 82 7 chr1 79956166 79956571 -202237093 + L1M4 LINE L1 3507 3941 -2205 255 183 0 83 chr1 79956757 79956817 -202236847 + L2 LINE L2 3259 3313 0 1695 175 14 14 chr1 79957079 79957270 -202236394 - AluJb SINE Alu 0 312 119 306 0 0 0 chr1 79957270 79957304 -202236360 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1695 175 14 14 chr1 79957304 79957424 -202236240 - AluJb SINE Alu -192 120 1 481 248 21 41 chr1 79957973 79958118 -202235546 + MIR SINE MIR 121 262 0 625 332 76 9 chr1 79958489 79958834 -202234830 - L2 LINE L2 -312 3001 2636 193 204 45 0 chr1 79958854 79958898 -202234766 - L2 LINE L2 -804 2510 2465 1954 145 10 20 chr1 79959407 79959710 -202233954 - AluJb SINE Alu -12 300 1 233 336 145 0 chr1 79960913 79961044 -202232620 + MIR SINE MIR 49 198 -64 772 144 8 0 chr1 79961097 79961222 -202232442 + FLAM_C SINE Alu 11 136 -7 2223 110 0 3 chr1 79961222 79961512 -202232152 + AluSx SINE Alu 1 289 -23 435 277 67 54 chr1 79962362 79962586 -202231078 - MIR SINE MIR 0 262 36 1629 223 13 86 chr1 79963529 79963992 -202229672 + MER21B LTR ERV1 20 448 -415 1500 165 24 4 chr1 79964005 79964259 -202229405 - AluJb SINE Alu -12 300 42 248 143 20 20 chr1 79964311 79964360 -202229304 - AluJb SINE Alu -253 49 1 1232 238 49 22 chr1 79964364 79964688 -202228976 + MER21B LTR ERV1 462 794 -69 1705 192 150 16 chr1 79964785 79965218 -202228446 + L1MD2 LINE L1 5661 6151 -208 4899 130 75 1 chr1 79965250 79966142 -202227522 - Tigger3b DNA MER2_type 0 1231 274 538 222 0 0 chr1 79966140 79966239 -202227425 - Tigger3b DNA MER2_type -1129 102 4 * 442 250 60 25 chr1 79966254 79966361 -202227303 + L1MD3 LINE L1 7787 7889 -106 1525 191 16 72 chr1 79966361 79966748 -202226916 - MLT1A1 LTR MaLR 0 365 1 442 250 60 25 chr1 79966748 79966840 -202226824 + L1MD3 LINE L1 7889 7993 -2 309 51 0 0 chr1 79967137 79967176 -202226488 + (CA)n Simple_repeat Simple_repeat 1 39 0 554 277 53 5 chr1 79967974 79968162 -202225502 - MER63A DNA MER1_type -13 197 1 321 225 0 0 chr1 79969015 79969087 -202224577 + MER91A DNA MER1_type 1 72 -124 22 0 0 0 chr1 79969574 79969596 -202224068 + AT_rich Low_complexity Low_complexity 1 22 0 291 100 0 0 chr1 79970009 79970049 -202223615 - MER4E LTR ERV1 -74 692 653 1223 210 13 8 chr1 79970178 79970416 -202223248 - MER8 DNA MER2_type 0 239 1 2205 104 0 7 chr1 79971148 79971447 -202222217 - AluSc SINE Alu -12 297 1 186 333 70 44 chr1 79971470 79971584 -202222080 + L2 LINE L2 3141 3257 -15 711 210 0 0 chr1 79971587 79971711 -202221953 + FLAM_C SINE Alu 1 124 -19 189 0 0 0 chr1 79971711 79971732 -202221932 + (TAA)n Simple_repeat Simple_repeat 2 22 0 274 375 98 23 chr1 79971792 79972056 -202221608 + L2 LINE L2 2976 3259 -13 237 311 40 0 chr1 79972078 79972152 -202221512 + GA-rich Low_complexity Low_complexity 1 77 0 10455 189 33 3 chr1 79972726 79975343 -202218321 - L1 LINE L1 -1511 6054 3356 761 124 28 6 chr1 79975366 79975623 -202218041 + AluJ SINE Alu 1 304 -8 1638 239 113 41 chr1 79975625 79975816 -202217848 - L1 LINE L1 -4213 3352 3176 2146 136 3 0 chr1 79975816 79976117 -202217547 - AluSx SINE Alu -10 302 1 1638 239 113 41 chr1 79976117 79976652 -202217012 - L1 LINE L1 -4389 3176 2574 1322 268 28 24 chr1 79976644 79976962 -202216702 - L1 LINE L1 -4278 2287 1965 * 1810 132 55 66 chr1 79976962 79977341 -202216323 - THE1C LTR MaLR 0 375 1 1322 268 28 24 chr1 79977341 79977532 -202216132 - L1 LINE L1 -4600 1965 1776 594 340 14 45 chr1 79978546 79978972 -202214692 - L1 LINE L1 -5532 1954 1542 1911 181 0 0 chr1 79978998 79979307 -202214357 - AluJb SINE Alu -3 309 1 932 213 32 36 chr1 79979383 79979822 -202213842 - MLT1D LTR MaLR -2 503 1 255 279 231 7 chr1 79979985 79980132 -202213532 - L2 LINE L2 0 3313 3134 542 240 24 0 chr1 79980140 79980265 -202213399 + L2 LINE L2 2425 2552 -762 1936 127 25 4 chr1 79980533 79980808 -202212856 - AluSq SINE Alu -32 281 1 340 269 21 62 chr1 79980938 79981083 -202212581 - MER58B DNA MER1_type -21 320 182 2302 96 0 0 chr1 79981373 79981675 -202211989 - AluSg SINE Alu -8 302 1 180 97 0 0 chr1 79982521 79982552 -202211112 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2195 70 4 0 chr1 79982557 79982829 -202210835 - AluSg SINE Alu -37 273 1 356 208 47 0 chr1 79983822 79983928 -202209736 - L1MC5 LINE L1 -68 7893 7783 21 0 0 0 chr1 79983937 79983958 -202209706 + AT_rich Low_complexity Low_complexity 1 21 0 294 29 0 0 chr1 79984421 79984456 -202209208 + (CA)n Simple_repeat Simple_repeat 2 36 0 392 199 0 139 chr1 79984530 79984635 -202209029 - L1MC5 LINE L1 -182 7779 7704 2762 12 0 28 chr1 79984635 79984955 -202208709 + AluY SINE Alu 1 311 0 392 199 0 139 chr1 79984955 79985015 -202208649 - L1MC5 LINE L1 -257 7704 7637 232 323 32 40 chr1 79985134 79985258 -202208406 + L2 LINE L2 2974 3096 -176 254 241 17 0 chr1 79985477 79985535 -202208129 - LTR16B LTR ERVL -405 59 1 381 313 0 0 chr1 79985575 79985671 -202207993 + L2 LINE L2 3217 3312 -1 1606 219 35 19 chr1 79986712 79987078 -202206586 + MLT1A2 LTR MaLR 3 374 0 2139 226 70 56 chr1 79987115 79987226 -202206438 + L1ME1 LINE L1 5364 5472 -694 4044 33 14 0 chr1 79987226 79987709 -202205955 + L1PA5 LINE L1 5661 6154 0 2139 226 70 56 chr1 79987709 79987973 -202205691 + L1ME1 LINE L1 5472 5731 -435 1921 121 17 0 chr1 79987973 79988262 -202205402 + AluSq SINE Alu 2 295 -18 2139 226 70 56 chr1 79988262 79988670 -202204994 + L1ME1 LINE L1 5731 6159 -7 25 0 0 0 chr1 79989215 79989240 -202204424 + AT_rich Low_complexity Low_complexity 1 25 0 2142 135 0 0 chr1 79989449 79989745 -202203919 - AluSx SINE Alu -16 296 1 2037 154 0 0 chr1 79989755 79990053 -202203611 - AluSx SINE Alu -14 298 1 880 264 79 4 chr1 79990056 79990336 -202203328 + L1MC/D LINE L1 5364 5664 -2144 18163 183 32 23 chr1 79990471 79993967 -202199697 - L1PA12 LINE L1 0 6819 3356 1916 165 119 16 chr1 79993967 79994355 -202199309 - MSTA LTR MaLR 0 428 1 18163 183 32 23 chr1 79994355 79994586 -202199078 - L1PA12 LINE L1 -3463 3356 3129 2261 120 3 3 chr1 79994586 79994894 -202198770 - AluSq SINE Alu -5 308 1 18163 183 32 23 chr1 79994894 79995461 -202198203 - L1PA12 LINE L1 -3690 3129 2569 2234 117 10 0 chr1 79995461 79995768 -202197896 - AluSx SINE Alu -2 310 1 18163 183 32 23 chr1 79995768 79998030 -202195634 - L1PA12 LINE L1 -4250 2569 79 263 250 0 0 chr1 79998739 79998815 -202194849 + T-rich Low_complexity Low_complexity 1 76 0 25 51 0 0 chr1 79999055 79999094 -202194570 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 79999194 79999217 -202194447 + AT_rich Low_complexity Low_complexity 1 23 0 2524 191 23 43 chr1 79999522 80000082 -202193582 - MER44D DNA MER2_type -1 604 1 412 228 131 0 chr1 80000385 80000530 -202193134 - MER103 DNA DNA 0 166 3 2265 114 13 0 chr1 80000801 80001109 -202192555 - AluSx SINE Alu 0 312 1 466 94 146 31 chr1 80001119 80001215 -202192449 + THE1C-int LTR MaLR 1474 1580 0 1636 154 34 40 chr1 80001215 80001391 -202192273 + THE1C LTR MaLR 1 176 -199 2383 94 3 0 chr1 80001391 80001690 -202191974 + AluSg SINE Alu 1 300 -10 1636 154 34 40 chr1 80001690 80001863 -202191801 + THE1C LTR MaLR 176 348 -27 7518 144 22 53 chr1 80001865 80002958 -202190706 - MSTA-int LTR MaLR -156 1424 387 1976 162 0 3 chr1 80002958 80003267 -202190397 + AluSx SINE Alu 1 308 -4 7518 144 22 53 chr1 80003267 80003641 -202190023 - MSTA-int LTR MaLR -1193 387 3 823 95 9 18 chr1 80003643 80003794 -202189870 - MSTA LTR MaLR 0 375 237 28 0 0 0 chr1 80003803 80003831 -202189833 + AT_rich Low_complexity Low_complexity 1 28 0 3189 179 24 28 chr1 80003840 80004073 -202189591 - MST-int LTR MaLR -302 1349 1116 6925 114 4 10 chr1 80004073 80005048 -202188616 + LTR5 LTR ERVK 1 969 0 3189 179 24 28 chr1 80005048 80005484 -202188180 - MST-int LTR MaLR -535 1116 683 1529 193 3 49 chr1 80005523 80005849 -202187815 + AluJb SINE Alu 1 311 -1 309 295 0 21 chr1 80005998 80006093 -202187571 - MER94 DNA DNA -41 93 1 21 57 0 0 chr1 80006129 80006164 -202187500 + AT_rich Low_complexity Low_complexity 1 35 0 1913 219 34 7 chr1 80007559 80008006 -202185658 + MER65C LTR ERV1 3 461 0 735 193 0 7 chr1 80008151 80008286 -202185378 - FLAM_C SINE Alu -2 141 8 2663 112 0 3 chr1 80008403 80008768 -202184896 + THE1B LTR MaLR 1 364 0 1059 114 0 114 chr1 80008999 80009192 -202184472 - AluSg/x SINE Alu -13 299 129 319 326 93 51 chr1 80009204 80009440 -202184224 - HAL1 LINE L1 -4 2503 2258 347 207 11 0 chr1 80009532 80009619 -202184045 - HAL1 LINE L1 -358 2149 2062 771 155 0 0 chr1 80009673 80009789 -202183875 + FLAM_C SINE Alu 1 116 -27 250 173 27 0 chr1 80010249 80010324 -202183340 + (CAGAGA)n Simple_repeat Simple_repeat 2 78 0 2028 151 0 3 chr1 80010508 80010800 -202182864 + AluSx SINE Alu 1 291 -21 216 163 0 0 chr1 80010892 80010935 -202182729 + (TA)n Simple_repeat Simple_repeat 1 43 0 566 194 90 1 chr1 80010935 80011151 -202182513 + MER21B LTR ERV1 132 388 -475 180 158 0 0 chr1 80011153 80011191 -202182473 + (TA)n Simple_repeat Simple_repeat 1 38 0 311 294 0 22 chr1 80011196 80011288 -202182376 - L1MC4 LINE L1 -1339 6703 6614 192 200 0 0 chr1 80011288 80011338 -202182326 + (TA)n Simple_repeat Simple_repeat 2 51 0 1039 145 141 17 chr1 80011923 80012157 -202181507 + MER21A LTR ERV1 1 263 -668 2272 140 42 116 chr1 80012162 80012666 -202180998 + MER21A LTR ERV1 377 834 -97 1849 99 22 37 chr1 80012666 80012939 -202180725 + AluSx SINE Alu 36 304 -8 2272 140 42 116 chr1 80012939 80013003 -202180661 + MER21A LTR ERV1 834 902 -29 2265 120 19 0 chr1 80013003 80013369 -202180295 + THE1C LTR MaLR 3 375 0 22 0 0 0 chr1 80013594 80013616 -202180048 + AT_rich Low_complexity Low_complexity 1 22 0 1467 132 0 38 chr1 80013620 80013855 -202179809 + AluJb SINE Alu 87 312 0 667 271 89 25 chr1 80014435 80014588 -202179076 - MIR SINE MIR -31 231 60 2273 98 3 10 chr1 80014588 80014893 -202178771 + AluSp SINE Alu 1 303 -10 667 271 89 25 chr1 80014893 80014942 -202178722 - MIR SINE MIR -202 60 16 27 0 0 0 chr1 80015056 80015083 -202178581 + AT_rich Low_complexity Low_complexity 1 27 0 1762 230 90 59 chr1 80015926 80016326 -202177338 + MLT1E2 LTR MaLR 18 443 -183 2235 119 0 0 chr1 80016326 80016620 -202177044 + AluSq SINE Alu 3 296 -17 1762 230 90 59 chr1 80016620 80016810 -202176854 + MLT1E2 LTR MaLR 443 626 0 297 390 128 14 chr1 80016886 80017168 -202176496 + L2 LINE L2 2959 3272 0 515 327 75 10 chr1 80017391 80017590 -202176074 + MIR SINE MIR 2 213 -49 2353 99 0 10 chr1 80017595 80017909 -202175755 + AluSx SINE Alu 1 311 -1 1529 206 86 8 chr1 80017985 80018369 -202175295 + MLT2D LTR ERVL 1 414 0 551 332 27 42 chr1 80018595 80018869 -202174795 - MLT1K LTR MaLR -66 522 252 2399 69 0 0 chr1 80018869 80019160 -202174504 - AluY SINE Alu -5 306 16 551 332 27 42 chr1 80019160 80019222 -202174442 - MLT1K LTR MaLR -336 252 191 394 263 59 34 chr1 80020112 80020230 -202173434 - MIR SINE MIR -102 160 40 2048 125 0 20 chr1 80020263 80020566 -202173098 + AluSq SINE Alu 1 297 -16 1197 179 50 0 chr1 80020629 80020830 -202172834 + AluJo SINE Alu 87 297 -15 192 152 0 0 chr1 80020862 80020895 -202172769 + GA-rich Low_complexity Low_complexity 2 34 0 258 231 154 39 chr1 80021152 80021282 -202172382 + LTR16A1 LTR ERVL 159 303 -154 291 326 49 54 chr1 80021510 80021694 -202171970 + MIR SINE MIR 23 205 -57 21 0 0 0 chr1 80021867 80021888 -202171776 + AT_rich Low_complexity Low_complexity 1 21 0 1915 136 140 76 chr1 80023265 80023700 -202169964 + MLT2C2 LTR ERVL 1 463 -1 2645 175 36 16 chr1 80023732 80024063 -202169601 + MER89 LTR ERV1 1 349 -210 1896 161 92 58 chr1 80024063 80024498 -202169166 + LTR47A LTR ERVL 3 452 0 2645 175 36 16 chr1 80024498 80024714 -202168950 + MER89 LTR ERV1 349 559 0 832 153 73 7 chr1 80025061 80025211 -202168453 - FRAM SINE Alu -13 163 4 28 29 0 0 chr1 80025364 80025399 -202168265 + AT_rich Low_complexity Low_complexity 1 35 0 2293 74 0 10 chr1 80025512 80025810 -202167854 - AluY SINE Alu -16 295 1 23 0 0 0 chr1 80025811 80025834 -202167830 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr1 80026603 80026632 -202167032 + (CA)n Simple_repeat Simple_repeat 2 30 0 376 294 66 7 chr1 80027863 80027999 -202165665 + MIR SINE MIR 19 162 -100 278 279 0 25 chr1 80027978 80028057 -202165607 - MIR SINE MIR 0 262 186 * 525 336 49 16 chr1 80028199 80028443 -202165221 - MIR SINE MIR -8 254 3 1864 139 12 53 chr1 80029117 80029440 -202164224 - AluSx SINE Alu -2 310 1 379 303 25 8 chr1 80029598 80029720 -202163944 + MIR3 SINE MIR 82 205 -3 2245 112 7 0 chr1 80030422 80030726 -202162938 + AluSx SINE Alu 1 306 -6 333 265 211 7 chr1 80031076 80031223 -202162441 - MER91A DNA MER1_type 0 196 20 440 281 52 7 chr1 80031926 80032079 -202161585 + L2 LINE L2 3150 3309 -4 2485 73 10 0 chr1 80032489 80032790 -202160874 + AluSq SINE Alu 1 304 -9 229 309 128 11 chr1 80033024 80033118 -202160546 + L2 LINE L2 3147 3251 -21 1959 152 3 7 chr1 80034276 80034578 -202159086 - AluJb SINE Alu -11 301 1 2407 84 3 10 chr1 80034630 80034941 -202158723 + AluSq SINE Alu 1 309 -4 194 0 39 0 chr1 80035160 80035186 -202158478 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr1 80035341 80035362 -202158302 + AT_rich Low_complexity Low_complexity 1 21 0 1079 176 5 5 chr1 80036182 80036381 -202157283 - MER2 DNA MER2_type -3 342 144 889 214 0 0 chr1 80036399 80036558 -202157106 + FRAM SINE Alu 12 170 -6 2001 116 11 21 chr1 80036561 80036874 -202156790 + AluSx SINE Alu 2 311 0 2263 128 21 23 chr1 80036972 80037400 -202156264 - L1MA6 LINE L1 -38 6262 5836 2336 92 0 0 chr1 80037460 80037764 -202155900 + AluSx SINE Alu 1 304 -8 237 299 0 15 chr1 80037901 80037968 -202155696 + MIR3 SINE MIR 137 202 -6 350 331 86 0 chr1 80038084 80038223 -202155441 - MIR SINE MIR -89 173 23 1695 142 109 18 chr1 80039433 80039539 -202154125 + MLT1A1 LTR MaLR 1 96 -269 2995 93 7 14 chr1 80039539 80039970 -202153694 + MSTA LTR MaLR 1 428 0 1695 142 109 18 chr1 80039970 80040194 -202153470 + MLT1A1 LTR MaLR 96 361 -4 2167 68 47 0 chr1 80040533 80040812 -202152852 - AluY SINE Alu -19 292 1 256 218 92 35 chr1 80041380 80041467 -202152197 + MIR SINE MIR 131 222 -40 1661 161 40 43 chr1 80041884 80042183 -202151481 - AluJb SINE Alu -14 298 1 23 54 0 0 chr1 80042362 80042399 -202151265 + AT_rich Low_complexity Low_complexity 1 37 0 2304 107 0 0 chr1 80042563 80042863 -202150801 + AluSg SINE Alu 1 300 -10 660 263 82 26 chr1 80043406 80043638 -202150026 - MIR SINE MIR -13 249 5 22 0 0 0 chr1 80044440 80044462 -202149202 + AT_rich Low_complexity Low_complexity 1 22 0 1692 111 31 160 chr1 80044833 80045180 -202148484 + MER1B DNA MER1_type 1 295 -2415 2228 94 7 3 chr1 80045180 80045478 -202148186 + AluSx SINE Alu 1 299 -13 1692 111 31 160 chr1 80045478 80045517 -202148147 + MER1B DNA MER1_type 295 337 0 976 49 0 0 chr1 80045764 80045887 -202147777 - L1PA4 LINE L1 -5 6150 6028 5463 27 1 0 chr1 80045887 80046553 -202147111 + L1PA4 LINE L1 5393 6059 -96 1709 189 0 0 chr1 80046923 80047232 -202146432 + AluJb SINE Alu 1 309 0 22 0 0 0 chr1 80047714 80047736 -202145928 + AT_rich Low_complexity Low_complexity 1 22 0 2157 137 0 0 chr1 80047888 80048195 -202145469 + AluSx SINE Alu 1 307 -5 1914 128 17 21 chr1 80048480 80048611 -202145053 + AluSx SINE Alu 1 131 -181 2300 86 3 7 chr1 80048611 80048913 -202144751 + AluSg SINE Alu 1 301 -9 1914 128 17 21 chr1 80048913 80049071 -202144593 + AluSx SINE Alu 131 289 -23 738 299 17 13 chr1 80049684 80049915 -202143749 + MIR SINE MIR 31 262 0 1807 157 7 21 chr1 80050057 80050344 -202143320 - AluJo SINE Alu -19 293 11 1050 100 0 0 chr1 80050509 80050649 -202143015 + AluSg/x SINE Alu 157 296 -16 1928 94 65 7 chr1 80050966 80051241 -202142423 - AluSc SINE Alu -18 291 1 2188 99 34 0 chr1 80051441 80051733 -202141931 + AluSx SINE Alu 1 302 -10 2315 87 3 10 chr1 80051909 80052221 -202141443 + AluSg SINE Alu 1 310 0 277 206 76 33 chr1 80052540 80052632 -202141032 + MIR SINE MIR 111 206 -56 573 231 32 70 chr1 80052698 80052850 -202140814 - MIR SINE MIR -82 180 35 2147 114 20 0 chr1 80052850 80053149 -202140515 - AluSq SINE Alu -8 305 1 573 231 32 70 chr1 80053149 80053182 -202140482 - MIR SINE MIR -227 35 2 583 284 72 64 chr1 80053231 80053481 -202140183 + MIR SINE MIR 1 252 -10 31 44 0 0 chr1 80055467 80055512 -202138152 + AT_rich Low_complexity Low_complexity 1 45 0 2218 110 0 3 chr1 80055718 80056019 -202137645 + AluSx SINE Alu 1 300 -12 262 243 60 112 chr1 80056066 80056317 -202137347 + L1ME LINE L1 5547 5784 -337 1980 123 7 0 chr1 80056378 80056654 -202137010 - AluSx SINE Alu -34 278 1 23 0 0 0 chr1 80057359 80057382 -202136282 + AT_rich Low_complexity Low_complexity 1 23 0 1897 144 7 23 chr1 80057586 80057891 -202135773 - AluJb SINE Alu -12 300 1 582 247 20 27 chr1 80058297 80058443 -202135221 + MIR SINE MIR 10 154 -108 1954 120 13 36 chr1 80059435 80059743 -202133921 + AluSq SINE Alu 1 301 -12 203 325 36 12 chr1 80059781 80059864 -202133800 - L2 LINE L2 -212 3060 2976 2029 107 52 0 chr1 80060855 80061145 -202132519 + AluSx SINE Alu 2 306 -6 21 0 0 0 chr1 80063689 80063710 -202129954 + AT_rich Low_complexity Low_complexity 1 21 0 2197 109 3 0 chr1 80064142 80064436 -202129228 - AluSx SINE Alu -17 295 1 463 251 31 49 chr1 80064709 80064872 -202128792 + MER63 DNA MER1_type 1 786 -276 3500 140 40 31 chr1 80065173 80065574 -202128090 + MER39B LTR ERV1 5 416 -237 1950 153 10 23 chr1 80065574 80065875 -202127789 + AluSx SINE Alu 1 297 -15 3500 140 40 31 chr1 80065875 80066116 -202127548 + MER39B LTR ERV1 416 653 0 1749 183 3 3 chr1 80066244 80066539 -202127125 - AluJo SINE Alu -17 295 1 1082 128 0 0 chr1 80066584 80066732 -202126932 + AluSg/x SINE Alu 153 300 -10 21 0 0 0 chr1 80066956 80066977 -202126687 + AT_rich Low_complexity Low_complexity 1 21 0 784 160 0 0 chr1 80066977 80067096 -202126568 - FLAM_C SINE Alu -14 119 1 272 320 92 8 chr1 80067338 80067459 -202126205 - MIR SINE MIR -63 145 20 2283 94 0 7 chr1 80067610 80067907 -202125757 - AluSq SINE Alu -14 299 5 1660 136 36 62 chr1 80067962 80068271 -202125393 - AluJb SINE Alu -9 303 3 244 310 50 10 chr1 80068307 80068407 -202125257 + L2 LINE L2 2642 2745 -569 186 150 125 0 chr1 80068511 80068551 -202125113 - L2 LINE L2 -4 3309 3265 459 380 69 50 chr1 80068734 80069155 -202124509 + L2 LINE L2 2844 3272 0 2326 83 7 3 chr1 80069487 80069787 -202123877 + AluSx SINE Alu 1 301 -11 1554 181 10 17 chr1 80069984 80070272 -202123392 + AluJo SINE Alu 5 290 -22 21 0 0 0 chr1 80070612 80070633 -202123031 + AT_rich Low_complexity Low_complexity 1 21 0 206 329 92 0 chr1 80070735 80070811 -202122853 - L2 LINE L2 -81 3191 3109 2068 112 0 20 chr1 80070815 80071109 -202122555 - AluSg SINE Alu -22 288 1 1207 244 64 74 chr1 80071217 80071391 -202122273 + L2 LINE L2 2599 2773 -540 2399 68 0 6 chr1 80071391 80071702 -202121962 - AluY SINE Alu -2 309 1 1207 244 64 74 chr1 80071702 80071996 -202121668 + L2 LINE L2 2773 3068 -245 1592 210 3 10 chr1 80071996 80072291 -202121373 - AluJb SINE Alu -19 293 1 1207 244 64 74 chr1 80072291 80072535 -202121129 + L2 LINE L2 3068 3313 0 281 295 139 8 chr1 80072589 80072718 -202120946 - L2 LINE L2 0 3313 3168 2089 120 0 3 chr1 80072920 80073212 -202120452 + AluSq SINE Alu 20 310 -3 372 269 10 71 chr1 80073212 80073316 -202120348 + MIR SINE MIR 17 114 -103 2001 93 4 14 chr1 80073451 80073731 -202119933 + AluSc SINE Alu 33 309 0 250 158 18 35 chr1 80074257 80074314 -202119350 + (CATA)n Simple_repeat Simple_repeat 2 57 0 779 171 55 66 chr1 80074540 80074721 -202118943 + MER58A DNA MER1_type 42 220 -4 664 378 89 18 chr1 80074931 80075710 -202117954 - L2 LINE L2 -284 2988 2157 2215 115 3 3 chr1 80076091 80076403 -202117261 + AluSx SINE Alu 1 312 0 27 81 0 0 chr1 80076814 80076876 -202116788 + AT_rich Low_complexity Low_complexity 1 62 0 341 187 0 33 chr1 80076926 80077017 -202116647 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 23 0 0 0 chr1 80078086 80078109 -202115555 + GC_rich Low_complexity Low_complexity 1 23 0 2815 13 0 0 chr1 80078229 80078540 -202115124 + AluYa5 SINE Alu 1 311 0 1284 168 0 5 chr1 80079847 80080043 -202113621 - AluJb SINE Alu -32 280 86 1968 159 0 3 chr1 80080188 80080483 -202113181 - AluJb SINE Alu -18 294 1 759 162 7 52 chr1 80080762 80080928 -202112736 + FLAM_C SINE Alu 2 161 0 230 333 98 32 chr1 80081104 80081227 -202112437 + MIR3 SINE MIR 58 188 -20 185 193 0 18 chr1 80081283 80081340 -202112324 + (TA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 80082207 80082232 -202111432 + AT_rich Low_complexity Low_complexity 1 25 0 247 245 168 58 chr1 80082466 80082621 -202111043 + MIR SINE MIR 2 173 -89 957 156 0 0 chr1 80083039 80083180 -202110484 + AluJo SINE Alu 1 141 -171 186 43 0 0 chr1 80083197 80083220 -202110444 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr1 80083220 80083247 -202110417 + AT_rich Low_complexity Low_complexity 1 27 0 1641 172 22 35 chr1 80083451 80083765 -202109899 + AluJo SINE Alu 1 310 -2 802 163 0 8 chr1 80083951 80084080 -202109584 - FLAM_C SINE Alu -5 128 1 2424 65 0 7 chr1 80084240 80084547 -202109117 + AluY SINE Alu 1 305 -6 318 250 0 12 chr1 80085010 80085090 -202108574 + CT-rich Low_complexity Low_complexity 1 79 0 2369 85 7 0 chr1 80086289 80086595 -202107069 + AluSg SINE Alu 1 308 -2 21 0 0 0 chr1 80086631 80086652 -202107012 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr1 80086692 80086721 -202106943 + AT_rich Low_complexity Low_complexity 1 29 0 205 355 0 0 chr1 80086800 80086862 -202106802 + GA-rich Low_complexity Low_complexity 2 63 0 531 252 23 0 chr1 80086865 80086996 -202106668 - MLT2C2 LTR ERVL -55 409 276 1064 211 18 0 chr1 80086997 80087215 -202106449 + AluJo SINE Alu 89 310 -2 1726 107 27 15 chr1 80087218 80087480 -202106184 - MLT2C2 LTR ERVL -190 274 10 414 269 40 92 chr1 80087668 80087917 -202105747 - L1MC4a LINE L1 -248 5914 5679 2067 119 3 3 chr1 80089712 80089998 -202103666 - AluSx SINE Alu -26 286 1 1007 93 0 0 chr1 80090005 80090157 -202103507 - AluSg/x SINE Alu 0 305 154 183 333 35 0 chr1 80090266 80090323 -202103341 - L2 LINE L2 -9 3263 3205 283 241 46 0 chr1 80090426 80090513 -202103151 - L1MC4 LINE L1 0 8042 7952 2073 106 43 0 chr1 80090516 80090798 -202102866 + AluSq SINE Alu 3 296 -17 298 238 0 38 chr1 80090835 80090915 -202102749 - MER112 DNA MER1_type -6 254 178 1740 147 0 67 chr1 80090977 80091304 -202102360 + AluJo SINE Alu 1 305 -7 2314 56 7 40 chr1 80092059 80092362 -202101302 + AluY SINE Alu 1 293 -18 356 132 0 77 chr1 80092736 80092827 -202100837 - L1M4 LINE L1 -1494 4652 4569 4789 174 36 39 chr1 80092856 80093810 -202099854 - L1MD1 LINE L1 0 6242 5279 1543 187 7 50 chr1 80093810 80094110 -202099554 - AluJb SINE Alu -25 287 1 4789 174 36 39 chr1 80094110 80094515 -202099149 - L1MD1 LINE L1 -963 5279 4874 1410 224 92 25 chr1 80094517 80094821 -202098843 - L1MD1 LINE L1 -1538 4608 4255 2178 122 3 0 chr1 80094821 80095132 -202098532 - AluSx SINE Alu 0 312 1 1410 224 92 25 chr1 80095132 80095340 -202098324 - L1MD1 LINE L1 -1891 4255 4062 23 0 0 0 chr1 80095355 80095378 -202098286 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 80095467 80095488 -202098176 + AT_rich Low_complexity Low_complexity 1 21 0 1743 119 25 0 chr1 80095961 80096205 -202097459 + AluSx SINE Alu 51 300 -12 2219 108 3 10 chr1 80096341 80096647 -202097017 + AluSx SINE Alu 1 304 -8 409 350 82 0 chr1 80097039 80097242 -202096422 - MIR SINE MIR -39 223 4 28 71 0 0 chr1 80097472 80097528 -202096136 + AT_rich Low_complexity Low_complexity 1 56 0 2269 68 30 17 chr1 80098004 80098299 -202095365 - AluSq SINE Alu -13 300 2 27 0 0 0 chr1 80098955 80098982 -202094682 + AT_rich Low_complexity Low_complexity 1 27 0 527 260 77 29 chr1 80099263 80099471 -202094193 - MLT1J LTR MaLR -1 510 293 2292 82 0 38 chr1 80099480 80099799 -202093865 + AluY SINE Alu 2 308 -3 958 184 63 20 chr1 80100531 80100955 -202092709 - LTR54 LTR ERV1 0 510 1 2228 109 3 3 chr1 80100969 80101272 -202092392 + AluSx SINE Alu 1 303 -9 220 286 0 0 chr1 80101485 80101541 -202092123 - L2 LINE L2 0 3272 3217 22 35 0 0 chr1 80102312 80102341 -202091323 + AT_rich Low_complexity Low_complexity 1 29 0 180 305 19 76 chr1 80102401 80102465 -202091199 - L2 LINE L2 -37 3235 3178 2214 110 0 7 chr1 80102465 80102765 -202090899 + AluSg1 SINE Alu 1 298 -11 180 305 19 76 chr1 80102765 80102805 -202090859 - L2 LINE L2 -94 3178 3137 1812 195 0 3 chr1 80103195 80103498 -202090166 + AluJb SINE Alu 1 302 -10 1894 129 0 84 chr1 80103500 80103833 -202089831 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr1 80103837 80103861 -202089803 + AT_rich Low_complexity Low_complexity 1 24 0 467 278 108 26 chr1 80104010 80104204 -202089460 + MIR SINE MIR 5 214 -48 1676 184 0 26 chr1 80104208 80104512 -202089152 + AluJb SINE Alu 1 296 -16 1083 214 149 29 chr1 80104600 80104790 -202088874 + MER34B LTR ERV1 182 348 -217 2190 129 10 0 chr1 80104790 80105092 -202088572 - AluSx SINE Alu -7 305 1 1083 214 149 29 chr1 80105092 80105209 -202088455 + MER34B LTR ERV1 348 526 -39 722 256 145 9 chr1 80105848 80106075 -202087589 + MIR SINE MIR 2 259 -3 346 351 139 13 chr1 80106134 80106436 -202087228 - L2 LINE L2 -683 2631 2292 880 214 25 62 chr1 80106530 80106683 -202086981 + MLT1J LTR MaLR 3 145 -366 2016 155 0 7 chr1 80106683 80106992 -202086672 - AluJo SINE Alu -3 309 3 880 214 25 62 chr1 80106992 80107081 -202086583 + MLT1J LTR MaLR 145 236 -275 1188 89 238 33 chr1 80107086 80107300 -202086364 + AluSg1 SINE Alu 33 290 -19 1008 95 14 102 chr1 80107344 80107627 -202086037 - AluY SINE Alu -12 299 42 755 162 7 52 chr1 80107818 80107984 -202085680 + FLAM_C SINE Alu 2 161 0 236 333 98 32 chr1 80108160 80108283 -202085381 + MIR3 SINE MIR 58 188 -20 185 193 0 18 chr1 80108339 80108396 -202085268 + (TA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 80109263 80109288 -202084376 + AT_rich Low_complexity Low_complexity 1 25 0 254 245 168 58 chr1 80109522 80109677 -202083987 + MIR SINE MIR 2 173 -89 940 156 0 0 chr1 80110095 80110236 -202083428 + AluJo SINE Alu 1 141 -171 186 43 0 0 chr1 80110253 80110276 -202083388 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr1 80110276 80110303 -202083361 + AT_rich Low_complexity Low_complexity 1 27 0 1616 172 22 35 chr1 80110507 80110821 -202082843 + AluJo SINE Alu 1 310 -2 796 163 0 8 chr1 80111007 80111136 -202082528 - FLAM_C SINE Alu -5 128 1 2532 58 0 6 chr1 80111296 80111609 -202082055 + AluY SINE Alu 1 311 0 1274 168 0 5 chr1 80112915 80113111 -202080553 - AluJb SINE Alu -32 280 86 1527 201 20 37 chr1 80113256 80113555 -202080109 - AluJb SINE Alu -18 294 1 755 162 7 52 chr1 80113834 80114000 -202079664 + FLAM_C SINE Alu 2 161 0 236 333 98 32 chr1 80114176 80114299 -202079365 + MIR3 SINE MIR 58 188 -20 185 193 0 18 chr1 80114355 80114412 -202079252 + (TA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 0 chr1 80115279 80115304 -202078360 + AT_rich Low_complexity Low_complexity 1 25 0 254 245 168 58 chr1 80115538 80115693 -202077971 + MIR SINE MIR 2 173 -89 940 156 0 0 chr1 80116111 80116252 -202077412 + AluJo SINE Alu 1 141 -171 186 43 0 0 chr1 80116269 80116292 -202077372 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr1 80116292 80116319 -202077345 + AT_rich Low_complexity Low_complexity 1 27 0 1616 172 22 35 chr1 80116523 80116837 -202076827 + AluJo SINE Alu 1 310 -2 796 163 0 8 chr1 80117023 80117152 -202076512 - FLAM_C SINE Alu -5 128 1 2457 59 0 7 chr1 80117312 80117616 -202076048 + AluY SINE Alu 1 302 -9 1654 118 26 97 chr1 80117891 80118230 -202075434 - AluYb8 SINE Alu -3 315 1 2225 48 35 28 chr1 80118294 80118609 -202075055 + AluY SINE Alu 1 317 0 209 211 96 0 chr1 80118823 80118875 -202074789 - MIR SINE MIR -96 166 110 28 61 0 0 chr1 80119483 80119532 -202074132 + AT_rich Low_complexity Low_complexity 1 49 0 1710 143 64 7 chr1 80120073 80120353 -202073311 + AluSx SINE Alu 5 300 -12 199 314 71 0 chr1 80121375 80121445 -202072219 - MIR3 SINE MIR -1 207 133 285 61 0 82 chr1 80121494 80121543 -202072121 + Alu SINE Alu 254 298 -4 1995 144 7 3 chr1 80122107 80122405 -202071259 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 80122785 80122808 -202070856 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr1 80122879 80122915 -202070749 + AT_rich Low_complexity Low_complexity 1 36 0 2108 120 0 20 chr1 80123085 80123385 -202070279 - AluSx SINE Alu -18 294 1 1044 117 0 7 chr1 80123817 80123962 -202069702 + AluSq/x SINE Alu 1 144 -168 25 31 0 0 chr1 80124433 80124465 -202069199 + AT_rich Low_complexity Low_complexity 1 32 0 282 292 11 11 chr1 80124495 80124584 -202069080 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 344 274 0 98 chr1 80125124 80125258 -202068406 + MIR SINE MIR 32 148 -78 1616 167 18 18 chr1 80125265 80125540 -202068124 + AluJo SINE Alu 5 279 -33 201 328 33 0 chr1 80126101 80126162 -202067502 + MIR SINE MIR 29 91 -171 2443 86 0 0 chr1 80127535 80127839 -202065825 - AluSc SINE Alu -5 304 1 2296 95 0 3 chr1 80128186 80128481 -202065183 + AluSq SINE Alu 5 298 -15 233 400 70 5 chr1 80128965 80129150 -202064514 - L2 LINE L2 -406 2908 2712 280 188 94 16 chr1 80129161 80129191 -202064473 + L1ME4a LINE L1 5982 6008 -113 1712 169 3 23 chr1 80129191 80129493 -202064171 - AluJb SINE Alu -16 296 1 280 188 94 16 chr1 80129493 80129590 -202064074 + L1ME4a LINE L1 6008 6119 -2 1405 172 77 0 chr1 80129649 80129910 -202063754 - AluJo SINE Alu -13 299 19 1479 97 66 0 chr1 80130891 80131087 -202062577 + AluSq SINE Alu 1 209 -104 25 0 0 0 chr1 80131091 80131116 -202062548 + AT_rich Low_complexity Low_complexity 1 25 0 2094 121 3 3 chr1 80131569 80131866 -202061798 + AluSp SINE Alu 1 297 -16 2161 108 0 14 chr1 80132221 80132516 -202061148 + AluSg SINE Alu 1 291 -19 2319 80 3 7 chr1 80132584 80132884 -202060780 - AluSq SINE Alu -14 299 1 22 35 0 0 chr1 80133868 80133897 -202059767 + AT_rich Low_complexity Low_complexity 1 29 0 2220 96 0 16 chr1 80134455 80134769 -202058895 + AluSc SINE Alu 1 309 0 2502 77 3 0 chr1 80134809 80135120 -202058544 + AluSp SINE Alu 2 313 0 201 311 147 26 chr1 80135148 80135338 -202058326 - L2 LINE L2 -2 3311 3099 1651 256 72 89 chr1 80135629 80136635 -202057029 + L1MC4 LINE L1 6923 7910 -132 1723 138 72 3 chr1 80136641 80136931 -202056733 + AluSx SINE Alu 1 310 -2 26 50 0 0 chr1 80136938 80136978 -202056686 + AT_rich Low_complexity Low_complexity 1 40 0 29 0 0 0 chr1 80137052 80137081 -202056583 + AT_rich Low_complexity Low_complexity 1 29 0 294 182 0 0 chr1 80137241 80137285 -202056379 + Alu SINE Alu 3 46 -255 1994 128 10 0 chr1 80137244 80137533 -202056131 + AluSx SINE Alu 6 297 -15 2236 113 27 0 chr1 80138107 80138408 -202055256 + AluSg SINE Alu 1 309 -1 2183 102 7 0 chr1 80138669 80138962 -202054702 + AluSg SINE Alu 1 295 -15 2140 129 0 19 chr1 80139134 80139452 -202054212 + AluSx SINE Alu 1 312 0 1587 189 7 14 chr1 80139629 80139914 -202053750 + AluJo SINE Alu 11 293 -19 2068 134 7 0 chr1 80140033 80140332 -202053332 + AluSx SINE Alu 3 303 -9 2137 125 10 0 chr1 80140810 80141106 -202052558 - AluSx SINE Alu -13 299 1 461 159 45 0 chr1 80141271 80141359 -202052305 + MIR SINE MIR 170 261 -1 210 283 19 0 chr1 80141484 80141537 -202052127 - L2 LINE L2 -10 3303 3250 260 330 70 92 chr1 80141665 80141992 -202051672 + L2 LINE L2 2336 2655 -659 278 356 62 25 chr1 80142411 80142571 -202051093 + L2 LINE L2 3102 3267 -5 519 210 12 12 chr1 80142582 80142744 -202050920 + GA-rich Low_complexity Low_complexity 3 164 0 1096 205 15 0 chr1 80142852 80143057 -202050607 - MER3 DNA MER1_type 0 209 2 1030 286 87 39 chr1 80143232 80143693 -202049971 + L1MEc LINE L1 36 518 -5878 1034 134 0 0 chr1 80143790 80143939 -202049725 - MLT1A1 LTR MaLR -7 358 210 2243 108 0 3 chr1 80143956 80144252 -202049412 + AluSg SINE Alu 1 295 -15 24 0 0 0 chr1 80144481 80144505 -202049159 + AT_rich Low_complexity Low_complexity 1 24 0 456 330 22 27 chr1 80144772 80144957 -202048707 - MIR SINE MIR -71 191 8 771 174 10 56 chr1 80145617 80145628 -202048036 + L1MB8 LINE L1 5983 5993 -185 1630 194 55 27 chr1 80145628 80145993 -202047671 + THE1C LTR MaLR 1 375 0 771 174 10 56 chr1 80145993 80146060 -202047604 + L1MB8 LINE L1 5993 6062 -116 2147 133 0 0 chr1 80146060 80146354 -202047310 + AluSq SINE Alu 1 294 -19 771 174 10 56 chr1 80146354 80146469 -202047195 + L1MB8 LINE L1 6062 6168 -10 260 231 157 46 chr1 80146721 80146829 -202046835 - MIR SINE MIR -6 256 137 1819 168 7 13 chr1 80146872 80147181 -202046483 - AluSx SINE Alu 0 312 6 358 338 50 7 chr1 80147186 80147325 -202046339 - MIR SINE MIR -113 149 5 385 243 282 6 chr1 80148382 80148563 -202045101 + MIR SINE MIR 23 253 -9 2132 120 7 7 chr1 80149608 80149917 -202043747 - AluSx SINE Alu -3 309 1 248 250 0 0 chr1 80150070 80150126 -202043538 - MIR SINE MIR -16 246 191 1318 126 0 0 chr1 80150522 80150696 -202042968 + AluSx SINE Alu 1 174 -138 1639 115 108 14 chr1 80150807 80151086 -202042578 + AluSx SINE Alu 1 305 -7 437 248 12 56 chr1 80151444 80151605 -202042059 - MER103 DNA DNA -10 156 3 2032 138 3 0 chr1 80151713 80152009 -202041655 - AluSx SINE Alu -15 297 1 287 321 12 0 chr1 80152137 80152221 -202041443 + MER117 DNA MER1_type 1 85 -112 595 287 129 10 chr1 80152331 80152540 -202041124 + MIR SINE MIR 26 259 -3 21 36 0 0 chr1 80153257 80153285 -202040379 + AT_rich Low_complexity Low_complexity 1 28 0 1723 190 0 7 chr1 80153285 80153580 -202040084 + AluJo SINE Alu 1 293 -19 1186 179 0 9 chr1 80153674 80153886 -202039778 + AluJo SINE Alu 87 296 -16 2034 119 65 0 chr1 80153886 80154180 -202039484 + AluSp SINE Alu 1 313 0 2252 104 0 3 chr1 80154372 80154670 -202038994 + AluSg SINE Alu 5 301 -9 37 76 0 0 chr1 80154930 80155009 -202038655 + AT_rich Low_complexity Low_complexity 1 79 0 30 0 0 0 chr1 80155344 80155374 -202038290 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr1 80155748 80155779 -202037885 + AT_rich Low_complexity Low_complexity 1 31 0 324 0 0 0 chr1 80156390 80156426 -202037238 + (CA)n Simple_repeat Simple_repeat 2 37 0 2101 103 7 3 chr1 80156543 80156856 -202036808 + AluSq SINE Alu 1 314 0 2243 90 3 0 chr1 80157061 80157360 -202036304 + AluSp SINE Alu 1 300 -13 2135 92 7 0 chr1 80157662 80157943 -202035721 - AluSx SINE Alu -29 283 1 1661 174 41 0 chr1 80158183 80158477 -202035187 + AluSx SINE Alu 1 306 -6 2275 109 0 3 chr1 80158559 80158862 -202034802 - AluSq SINE Alu -11 302 1 367 233 183 20 chr1 80158862 80159056 -202034608 - L1MCa LINE L1 -2696 3730 3569 1766 176 11 11 chr1 80159056 80159393 -202034271 - AluJb SINE Alu 0 337 1 367 233 183 20 chr1 80159393 80159497 -202034167 - L1MCa LINE L1 -2857 3569 3382 1474 273 66 39 chr1 80159611 80160074 -202033590 - L1MCa LINE L1 -3327 3099 2650 2167 87 3 14 chr1 80160074 80160363 -202033301 + AluSg SINE Alu 1 286 -24 1474 273 66 39 chr1 80160363 80160601 -202033063 - L1MCa LINE L1 -3776 2650 2370 2216 107 16 7 chr1 80160601 80160909 -202032755 - AluSx SINE Alu -1 311 1 1474 273 66 39 chr1 80160909 80161044 -202032620 - L1MCa LINE L1 -4056 2370 2240 724 295 168 23 chr1 80161049 80161490 -202032174 - L2 LINE L2 -580 2734 2230 2167 100 4 0 chr1 80161505 80161784 -202031880 + AluSg SINE Alu 1 280 -30 342 61 0 0 chr1 80161971 80162020 -202031644 + (CA)n Simple_repeat Simple_repeat 2 50 0 1722 136 68 18 chr1 80162806 80163085 -202030579 - AluSx SINE Alu -19 293 1 1385 178 13 65 chr1 80163116 80163263 -202030401 + AluJb SINE Alu 1 125 -187 2199 114 7 0 chr1 80163263 80163561 -202030103 + AluSx SINE Alu 1 300 -12 1385 178 13 65 chr1 80163561 80163722 -202029942 + AluJb SINE Alu 125 293 -19 275 360 84 17 chr1 80163746 80163924 -202029740 - MIR SINE MIR -3 259 70 3568 179 119 40 chr1 80163966 80164395 -202029269 - Charlie1a DNA MER1_type -1307 1454 1060 2331 88 3 0 chr1 80164395 80164690 -202028974 + AluSp SINE Alu 1 296 -17 3568 179 119 40 chr1 80164690 80165204 -202028460 - Charlie1a DNA MER1_type -1701 1060 437 945 121 0 14 chr1 80165239 80165379 -202028285 - FLAM_C SINE Alu -5 138 1 1254 219 55 47 chr1 80165419 80165762 -202027902 - Charlie1a DNA MER1_type -1057 398 53 212 136 159 0 chr1 80166013 80166057 -202027607 + L2 LINE L2 2673 2723 -591 2649 39 0 3 chr1 80166057 80166365 -202027299 + AluY SINE Alu 1 307 -4 234 313 80 55 chr1 80166927 80167090 -202026574 - 7SK RNA RNA -26 167 1 2102 91 45 14 chr1 80167531 80167817 -202025847 - AluSp SINE Alu -18 295 1 778 286 95 14 chr1 80168086 80168380 -202025284 + HsTC2 DNA Tc2 486 803 -1095 436 299 160 46 chr1 80168795 80169101 -202024563 + L3 LINE CR1 613 989 -588 2051 126 3 26 chr1 80169101 80169403 -202024261 + AluSx SINE Alu 1 295 -17 436 299 160 46 chr1 80169403 80169551 -202024113 + L3 LINE CR1 989 1119 -458 189 293 0 0 chr1 80169607 80169648 -202024016 - MIR SINE MIR -21 241 201 * 210 258 290 0 chr1 80169647 80169740 -202023924 + L3 LINE CR1 1165 1284 -293 22 0 0 0 chr1 80169871 80169893 -202023771 + AT_rich Low_complexity Low_complexity 1 22 0 325 284 41 53 chr1 80170029 80170131 -202023533 + MIR SINE MIR 64 165 -97 1633 158 0 0 chr1 80170131 80170378 -202023286 + AluSx SINE Alu 6 252 -60 325 284 41 53 chr1 80170378 80170444 -202023220 + MIR SINE MIR 165 230 -32 2119 117 4 0 chr1 80170632 80170946 -202022718 - AluSx SINE Alu 0 315 1 2447 62 0 3 chr1 80171452 80171758 -202021906 + AluY SINE Alu 1 305 -6 222 232 0 36 chr1 80174462 80174518 -202019146 - L2 LINE L2 -4 3268 3215 2227 90 23 0 chr1 80175040 80175339 -202018325 - AluSx SINE Alu -6 306 1 235 203 87 43 chr1 80175615 80175684 -202017980 - MIR SINE MIR -1 261 190 215 339 16 0 chr1 80175775 80175837 -202017827 - L2 LINE L2 -473 2841 2779 2246 90 7 0 chr1 80175843 80176132 -202017532 + AluSg SINE Alu 1 291 -19 2362 99 3 6 chr1 80176207 80176519 -202017145 + AluSq SINE Alu 1 311 -2 282 290 97 77 chr1 80176598 80176898 -202016766 - L2 LINE L2 -899 2415 2110 1509 205 0 8 chr1 80177110 80177378 -202016286 + AluJo SINE Alu 1 266 -46 225 0 0 0 chr1 80177393 80177418 -202016246 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2273 114 0 3 chr1 80177424 80177732 -202015932 - AluSq SINE Alu -1 312 6 1585 154 71 7 chr1 80177740 80178020 -202015644 - AluJb SINE Alu -14 298 1 833 165 0 0 chr1 80178036 80178163 -202015501 - FLAM_C SINE Alu -16 127 1 1935 122 18 14 chr1 80178365 80178644 -202015020 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr1 80178644 80178668 -202014996 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1773 189 26 28 chr1 80178751 80179175 -202014489 + Charlie4a DNA MER1_type 85 507 -1 352 284 119 47 chr1 80179598 80179834 -202013830 - MLT1K LTR MaLR 0 588 336 2347 93 0 0 chr1 80180350 80180651 -202013013 + AluSx SINE Alu 1 301 -11 1569 137 68 0 chr1 80181843 80182092 -202011572 + AluSx SINE Alu 30 295 -17 2003 105 3 51 chr1 80182248 80182562 -202011102 + AluSx SINE Alu 5 303 -9 2525 86 83 6 chr1 80182674 80183024 -202010640 + MER51B LTR ERV1 1 377 0 2339 128 51 73 chr1 80183125 80183363 -202010301 - MER4E LTR ERV1 -10 756 514 2029 112 14 0 chr1 80183363 80183669 -202009995 - AluSx SINE Alu 0 310 1 2339 128 51 73 chr1 80183669 80184031 -202009633 - MER4E LTR ERV1 -252 514 1 545 147 42 0 chr1 80184147 80184242 -202009422 + MER53 DNA DNA 1 99 -90 346 109 0 163 chr1 80184272 80184328 -202009336 - MER53 DNA DNA -78 111 74 2473 73 0 3 chr1 80184328 80184630 -202009034 + AluY SINE Alu 1 301 -10 346 109 0 163 chr1 80184630 80184665 -202008999 - MER53 DNA DNA -115 74 35 307 179 14 150 chr1 80184670 80184762 -202008902 + MER4B LTR ERV1 1 69 -541 1454 199 0 23 chr1 80184762 80185069 -202008595 + AluSq SINE Alu 5 304 -9 307 179 14 150 chr1 80185069 80185116 -202008548 + MER4B LTR ERV1 69 121 -489 1945 164 3 3 chr1 80185651 80185963 -202007701 + AluSx SINE Alu 1 312 0 888 205 50 10 chr1 80186306 80186506 -202007158 + MER3 DNA MER1_type 1 208 -1 2221 117 7 7 chr1 80186642 80186951 -202006713 + AluSq SINE Alu 1 309 -4 198 0 0 0 chr1 80186990 80187012 -202006652 + (TTG)n Simple_repeat Simple_repeat 2 23 0 599 148 141 15 chr1 80187053 80187188 -202006476 + MER5C DNA MER1_type 2 153 -171 2183 116 3 10 chr1 80187198 80187501 -202006163 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr1 80187619 80187640 -202006024 + AT_rich Low_complexity Low_complexity 1 21 0 2160 118 0 13 chr1 80187646 80187950 -202005714 + AluSq SINE Alu 1 300 -13 1798 130 20 13 chr1 80188121 80188421 -202005243 + AluSx SINE Alu 1 302 -10 2056 119 33 3 chr1 80188421 80188724 -202004940 + AluSx SINE Alu 1 312 0 2211 109 3 0 chr1 80188792 80189094 -202004570 + AluSx SINE Alu 1 303 -9 185 211 19 0 chr1 80189178 80189230 -202004434 + CT-rich Low_complexity Low_complexity 5 57 0 307 364 51 0 chr1 80190668 80190786 -202002878 - L2 LINE L2 -12 3260 3137 2380 96 0 3 chr1 80190848 80191160 -202002504 + AluSq SINE Alu 1 311 -2 35 54 0 0 chr1 80291267 80291323 -201902341 + AT_rich Low_complexity Low_complexity 1 56 0 209 162 65 0 chr1 80291328 80291482 -201902182 + (TA)n Simple_repeat Simple_repeat 2 165 0 281 204 8 0 chr1 80291513 80291645 -201902019 + (TA)n Simple_repeat Simple_repeat 2 134 0 345 289 0 10 chr1 80291703 80291807 -201901857 - L1MC4 LINE L1 -1323 6719 6617 340 178 59 0 chr1 80291821 80291990 -201901674 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 351 184 40 0 chr1 80292036 80292188 -201901476 + (TCTA)n Simple_repeat Simple_repeat 1 158 0 248 54 0 27 chr1 80292190 80292227 -201901437 + (TA)n Simple_repeat Simple_repeat 1 36 0 2672 106 41 6 chr1 80292229 80292630 -201901034 - MLT2A1 LTR ERVL -35 480 1 631 274 96 14 chr1 80293155 80293363 -201900301 + MIR SINE MIR 4 228 -34 348 161 110 77 chr1 80294383 80294551 -201899113 - L1MC2 LINE L1 0 6344 6253 200 83 0 28 chr1 80294820 80294856 -201898808 + (ATG)n Simple_repeat Simple_repeat 1 35 0 1934 180 27 27 chr1 80295487 80295892 -201897772 - MER89 LTR ERV1 -10 549 145 12456 25 1 2 chr1 80295994 80297446 -201896218 + L1P LINE L1 3813 5262 -884 482 114 13 0 chr1 80297448 80297527 -201896137 + (TTC)n Simple_repeat Simple_repeat 3 82 0 347 310 89 13 chr1 80299825 80299983 -201893681 + MIR SINE MIR 55 224 -38 * 396 283 141 11 chr1 80299963 80300140 -201893524 - MIR SINE MIR -50 212 13 2056 140 64 17 chr1 80300277 80300635 -201893029 - THE1C LTR MaLR 0 375 1 1755 207 87 44 chr1 80301021 80301518 -201892146 - Charlie1b DNA MER1_type -4 519 2 371 252 16 47 chr1 80302595 80302722 -201890942 - MIR SINE MIR -50 212 90 425 275 162 6 chr1 80302855 80303022 -201890642 + MER113 DNA MER1_type? 227 419 -102 4761 167 83 192 chr1 80303775 80305742 -201887922 + MER52A LTR ERV1 1 1754 -1 6477 182 61 41 chr1 80305966 80307320 -201886344 - THE1B-int LTR MaLR -269 1382 3 2613 127 5 19 chr1 80307322 80307691 -201885973 - THE1B LTR MaLR 0 364 1 22 94 0 0 chr1 80307701 80307765 -201885899 + AT_rich Low_complexity Low_complexity 1 64 0 509 240 0 0 chr1 80307997 80308097 -201885567 - MER5A DNA MER1_type -83 106 7 974 214 43 16 chr1 80308119 80308376 -201885288 + MER5C DNA MER1_type 10 273 -51 327 228 48 3 chr1 80308377 80308700 -201884964 + (TA)n Simple_repeat Simple_repeat 1 337 0 22 0 0 0 chr1 80308706 80308728 -201884936 + AT_rich Low_complexity Low_complexity 1 22 0 399 137 24 38 chr1 80308808 80308890 -201884774 + L1PA13 LINE L1 5747 5843 -320 217 167 0 0 chr1 80308907 80308943 -201884721 + MER5C DNA MER1_type 286 321 -3 293 281 90 0 chr1 80309373 80309462 -201884202 - MIR SINE MIR -118 144 48 407 307 31 24 chr1 80309499 80309626 -201884038 + LTR67 LTR ERVL 36 163 -394 840 124 124 59 chr1 80309705 80309874 -201883790 + MLT1C LTR MaLR 1 180 -287 2129 131 49 68 chr1 80309916 80310119 -201883545 - L1PA16 LINE L1 -11 6155 5962 2207 111 10 0 chr1 80310119 80310425 -201883239 + AluSg SINE Alu 1 309 -1 2129 131 49 68 chr1 80310425 80310632 -201883032 - L1PA16 LINE L1 -204 5962 5753 226 208 69 85 chr1 80311424 80311554 -201882110 + L1MEc LINE L1 1956 2083 -4313 2162 98 13 3 chr1 80311857 80312163 -201881501 + AluSc SINE Alu 1 309 0 329 205 64 13 chr1 80312163 80312241 -201881423 + L1MEc LINE L1 3021 3102 -3113 424 228 221 0 chr1 80312305 80312463 -201881201 + L1MEc LINE L1 764 956 -6182 869 174 39 39 chr1 80312591 80312769 -201880895 + AluJb SINE Alu 130 307 -5 1046 180 199 13 chr1 80314141 80314494 -201879170 + MER39 LTR ERV1 1 424 -229 778 171 76 128 chr1 80314674 80314944 -201878720 - L1M4 LINE L1 -1098 5048 4794 1198 195 119 55 chr1 80314944 80315287 -201878377 - MLT1A1 LTR MaLR 0 365 1 778 171 76 128 chr1 80315287 80315320 -201878344 - L1M4 LINE L1 -1352 4794 4761 350 325 72 79 chr1 80315320 80315748 -201877916 + L1MEc LINE L1 933 1357 -5590 2167 102 3 0 chr1 80315749 80316034 -201877630 + AluY SINE Alu 26 311 0 303 216 158 47 chr1 80316394 80316573 -201877091 + L1MEc LINE L1 1261 1443 -5412 228 213 66 0 chr1 80316609 80316670 -201876994 - L1M4 LINE L1 -2266 3880 3816 491 267 42 0 chr1 80316757 80316877 -201876787 + L2 LINE L2 3189 3313 0 337 306 35 28 chr1 80318709 80318853 -201874811 + MIR SINE MIR 80 224 -38 2424 27 41 17 chr1 80321311 80321606 -201872058 - AluY SINE Alu -9 302 1 455 146 27 64 chr1 80322242 80322352 -201871312 - L1MB3 LINE L1 -1 6182 6077 22 70 0 0 chr1 80323096 80323139 -201870525 + AT_rich Low_complexity Low_complexity 1 43 0 2042 87 33 43 chr1 80323164 80323463 -201870201 - AluSx SINE Alu -16 296 1 2125 130 3 0 chr1 80323502 80323810 -201869854 + AluSx SINE Alu 1 309 -3 2120 147 42 70 chr1 80326135 80326537 -201867127 + MER47B DNA MER2_type 28 418 0 449 321 30 53 chr1 80326728 80326993 -201866671 + L2 LINE L2 3010 3268 -4 1881 112 10 33 chr1 80326995 80327299 -201866365 - AluSx SINE Alu -15 297 1 648 143 16 5 chr1 80327401 80327582 -201866082 + CT-rich Low_complexity Low_complexity 1 182 0 2385 73 0 0 chr1 80327939 80328228 -201865436 - AluY SINE Alu -1 310 22 444 294 159 6 chr1 80329800 80329970 -201863694 + MIR3 SINE MIR 7 202 -6 289 286 12 0 chr1 80330101 80330185 -201863479 - L2 LINE L2 -8 3264 3180 371 347 33 8 chr1 80330188 80330309 -201863355 - MER91C DNA MER1_type -16 124 1 186 379 15 0 chr1 80330309 80330373 -201863291 - L2 LINE L2 -72 3200 3136 2373 81 3 0 chr1 80330763 80331059 -201862605 - AluY SINE Alu -14 297 1 887 170 11 39 chr1 80331065 80331247 -201862417 - FRAM SINE Alu 0 176 1 466 333 70 33 chr1 80331746 80332019 -201861645 - L2 LINE L2 -350 2964 2682 504 232 51 62 chr1 80332599 80332776 -201860888 - MIR SINE MIR -35 227 53 243 239 17 86 chr1 80332867 80332984 -201860680 - L3 LINE CR1 -162 1415 1307 21 71 0 0 chr1 80333597 80333639 -201860025 + AT_rich Low_complexity Low_complexity 1 42 0 605 253 76 25 chr1 80333981 80334179 -201859485 - L2 LINE L2 0 3313 3106 432 309 8 0 chr1 80334195 80334318 -201859346 - L2 LINE L2 -615 2699 2576 270 246 14 0 chr1 80334814 80334883 -201858781 - MLT1K LTR MaLR -6 582 513 254 211 19 0 chr1 80335005 80335057 -201858607 + LTR16A1 LTR ERVL 405 457 0 238 313 82 22 chr1 80335799 80335933 -201857731 - LTR67 LTR ERVL -4 553 412 396 88 0 0 chr1 80336315 80336372 -201857292 + (TG)n Simple_repeat Simple_repeat 2 58 0 365 295 33 27 chr1 80336463 80336646 -201857018 - MIR SINE MIR -13 249 66 2154 113 0 0 chr1 80337648 80337974 -201855690 - AluSx SINE Alu 0 326 1 252 288 85 25 chr1 80338117 80338235 -201855429 - MIR SINE MIR -52 210 86 189 287 191 26 chr1 80338300 80338415 -201855249 + L2 LINE L2 3179 3312 -1 316 267 109 44 chr1 80339160 80339558 -201854106 - MLT1L LTR MaLR -83 531 10 1124 179 72 62 chr1 80339661 80339968 -201853696 + MER33 DNA MER1_type 15 324 0 1236 178 54 51 chr1 80340180 80340456 -201853208 + AluJo SINE Alu 26 302 -10 210 158 53 0 chr1 80340935 80340992 -201852672 + (TAA)n Simple_repeat Simple_repeat 2 61 0 482 45 0 15 chr1 80342420 80342486 -201851178 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 249 30 0 0 chr1 80342511 80342544 -201851120 - L1PA4 LINE L1 -181 5974 5942 1251 26 20 0 chr1 80342544 80342744 -201850920 + L1PA4 LINE L1 5989 6191 0 1393 133 0 0 chr1 80342763 80342958 -201850706 + AluSq SINE Alu 1 195 -118 1140 319 109 67 chr1 80343330 80344832 -201848832 - L2 LINE L2 -268 3004 1442 345 109 0 0 chr1 80344858 80344913 -201848751 + (TG)n Simple_repeat Simple_repeat 2 56 0 441 210 205 79 chr1 80345474 80345879 -201847785 - L1ME4a LINE L1 -13 6108 5653 324 0 0 0 chr1 80346884 80346920 -201846744 + (CA)n Simple_repeat Simple_repeat 2 37 0 242 360 128 8 chr1 80347156 80347281 -201846383 - MIR3 SINE MIR -41 167 28 245 204 0 0 chr1 80349463 80349512 -201844152 - MLT1D LTR MaLR -2 503 455 1604 155 181 12 chr1 80349522 80349552 -201844112 - MSTA LTR MaLR -35 393 369 1962 133 7 3 chr1 80349552 80349837 -201843827 + AluSx SINE Alu 1 286 -26 1604 155 181 12 chr1 80349837 80350142 -201843522 - MSTA LTR MaLR -59 369 1 * 1635 206 49 57 chr1 80350142 80350603 -201843061 - MLT1D LTR MaLR -42 463 7 2132 132 0 0 chr1 80350802 80351097 -201842567 - AluSx SINE Alu -17 295 1 27 62 0 0 chr1 80351108 80351156 -201842508 + AT_rich Low_complexity Low_complexity 1 48 0 1503 176 0 0 chr1 80351440 80351678 -201841986 + AluJo SINE Alu 56 293 -19 309 231 120 17 chr1 80351687 80351804 -201841860 + MLT1L LTR MaLR 123 251 -364 1854 183 24 24 chr1 80352791 80353162 -201840502 - MLT1A2 LTR MaLR 0 374 4 588 144 22 14 chr1 80353485 80353624 -201840040 - Charlie5 DNA MER1_type -14 2598 2459 320 179 120 60 chr1 80353749 80353866 -201839798 - L1M4 LINE L1 -433 5745 5622 2420 91 3 0 chr1 80353890 80354197 -201839467 - AluSp SINE Alu -5 308 1 378 263 105 9 chr1 80354383 80354497 -201839167 - L2 LINE L2 0 3313 3189 200 330 174 0 chr1 80354555 80354664 -201839000 + MIR SINE MIR 128 255 -7 225 0 0 0 chr1 80354667 80354692 -201838972 + (TAA)n Simple_repeat Simple_repeat 2 26 0 200 235 73 44 chr1 80355018 80355086 -201838578 - L2 LINE L2 -2 3270 3201 260 308 0 0 chr1 80357137 80357202 -201836462 + L2 LINE L2 3249 3313 0 1540 116 39 35 chr1 80361450 80361734 -201831930 + L1MA5A LINE L1 6011 6295 -2 344 291 90 8 chr1 80361972 80362106 -201831558 - L2 LINE L2 -2 3311 3167 1088 191 43 0 chr1 80362399 80362608 -201831056 - MER20 DNA MER1_type 0 219 2 26 30 0 0 chr1 80365093 80365126 -201828538 + AT_rich Low_complexity Low_complexity 1 33 0 218 314 20 49 chr1 80365199 80365301 -201828363 + MIR SINE MIR 35 133 -129 1505 182 7 34 chr1 80365345 80365642 -201828022 - AluJo SINE Alu -21 291 3 318 280 83 23 chr1 80365820 80365952 -201827712 + MIR3 SINE MIR 62 201 -7 958 258 114 31 chr1 80366431 80366888 -201826776 - HAL1 LINE L1 -4 2503 2009 235 231 77 44 chr1 80366991 80367082 -201826582 - HAL1 LINE L1 -711 1796 1703 382 310 75 50 chr1 80367210 80367410 -201826254 - MIR SINE MIR -28 234 30 1457 45 6 0 chr1 80368542 80368718 -201824946 - AluY SINE Alu -134 177 1 320 304 30 7 chr1 80369298 80369433 -201824231 - HAL1b LINE L1 -12 1336 1199 619 280 173 23 chr1 80369460 80369760 -201823904 + L3 LINE CR1 1232 1576 -1 2005 147 0 0 chr1 80370329 80370628 -201823036 - AluSx SINE Alu -13 299 1 2275 68 3 0 chr1 80370656 80370990 -201822674 + AluY SINE Alu 1 311 0 1227 63 38 0 chr1 80370990 80371149 -201822515 + AluY SINE Alu 133 297 -14 498 252 89 24 chr1 80371556 80371722 -201821942 + MIR SINE MIR 34 208 -54 21 0 0 0 chr1 80371944 80371965 -201821699 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 80372018 80372047 -201821617 + AT_rich Low_complexity Low_complexity 1 29 0 184 328 17 0 chr1 80372124 80372182 -201821482 + MIR SINE MIR 93 151 -111 212 324 5 134 chr1 80372436 80372652 -201821012 + L2 LINE L2 2992 3179 -93 2078 122 0 3 chr1 80372862 80373156 -201820508 + AluSg SINE Alu 1 293 -17 399 253 0 0 chr1 80375294 80375377 -201818287 - MIR SINE MIR -93 115 33 968 245 52 9 chr1 80375424 80375657 -201818007 + MIR SINE MIR 20 262 0 311 185 13 11 chr1 80376838 80377074 -201816590 + AluJb SINE Alu 1 285 -17 525 173 39 0 chr1 80377074 80377230 -201816434 + (TA)n Simple_repeat Simple_repeat 1 162 0 306 0 0 0 chr1 80377230 80377264 -201816400 + (TG)n Simple_repeat Simple_repeat 1 34 0 2168 65 0 14 chr1 80377268 80377546 -201816118 - AluY SINE Alu -37 274 1 208 264 19 0 chr1 80377546 80377599 -201816065 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 192 273 0 0 chr1 80377615 80377703 -201815961 + (TA)n Simple_repeat Simple_repeat 2 89 0 204 40 0 0 chr1 80377706 80377731 -201815933 + (TG)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr1 80377953 80377984 -201815680 + AT_rich Low_complexity Low_complexity 1 31 0 1354 273 94 19 chr1 80378834 80379303 -201814361 - MLT1J LTR MaLR -7 504 1 194 333 0 17 chr1 80379714 80379774 -201813890 + L2 LINE L2 3210 3268 -4 3626 94 63 0 chr1 80381210 80381730 -201811934 - MER41A LTR ERV1 -1 553 1 3263 90 77 4 chr1 80381755 80382221 -201811443 - LTR3b LTR ERVK 0 500 1 1426 160 4 53 chr1 80382869 80383150 -201810514 - AluJo SINE Alu -10 302 36 2077 151 0 0 chr1 80383215 80383513 -201810151 - AluSx SINE Alu -14 298 1 187 336 75 19 chr1 80384014 80384121 -201809543 - L2 LINE L2 -11 3261 3149 398 287 33 0 chr1 80384131 80384253 -201809411 - L2 LINE L2 0 3313 3188 629 115 0 57 chr1 80384646 80384768 -201808896 - L1MA7 LINE L1 -2 6289 6175 284 211 127 0 chr1 80385511 80385582 -201808082 + MER69 DNA AcHobo 2447 2526 0 1812 173 17 0 chr1 80385909 80386383 -201807281 + AluJb SINE Alu 1 312 0 291 195 0 98 chr1 80386887 80386969 -201806695 - MIR SINE MIR -3 259 186 578 201 0 52 chr1 80386982 80387116 -201806548 - FRAM SINE Alu -30 146 20 652 261 34 6 chr1 80387129 80387305 -201806359 - MIR SINE MIR -62 200 20 208 307 168 10 chr1 80388234 80388335 -201805329 + MIR SINE MIR 35 151 -111 271 322 26 35 chr1 80388378 80388493 -201805171 - L2 LINE L2 -2 3311 3198 378 303 129 15 chr1 80388665 80388797 -201804867 + MIR3 SINE MIR 44 190 -18 774 258 91 5 chr1 80389456 80389665 -201803999 + MIR SINE MIR 2 228 -34 1841 136 48 3 chr1 80391100 80391410 -201802254 - L1MC1 LINE L1 0 6333 6010 667 334 33 61 chr1 80392389 80392916 -201800748 - L2 LINE L2 -38 3234 2723 857 39 39 0 chr1 80394326 80394455 -201799209 + (TCTA)n Simple_repeat Simple_repeat 4 137 0 315 71 0 0 chr1 80394462 80394504 -201799160 + (CA)n Simple_repeat Simple_repeat 2 43 0 481 299 92 33 chr1 80394644 80394979 -201798685 - L1ME4a LINE L1 -3 6118 5764 21 0 0 0 chr1 80395071 80395092 -201798572 + AT_rich Low_complexity Low_complexity 1 21 0 2294 88 11 0 chr1 80395289 80395572 -201798092 - AluSc SINE Alu -23 286 1 216 204 23 0 chr1 80396900 80396944 -201796720 + CT-rich Low_complexity Low_complexity 3 47 0 190 278 56 0 chr1 80396958 80397012 -201796652 - L2 LINE L2 -5 3267 3211 458 267 116 15 chr1 80397550 80397712 -201795952 + MIR SINE MIR 3 180 -82 2091 130 0 0 chr1 80398386 80398693 -201794971 - AluSx SINE Alu 0 307 1 210 162 0 0 chr1 80398858 80398895 -201794769 + (TA)n Simple_repeat Simple_repeat 1 37 0 365 77 123 0 chr1 80398900 80398965 -201794699 - L1MC2 LINE L1 -3 6341 6269 200 220 0 68 chr1 80400262 80400321 -201793343 + L2 LINE L2 3251 3305 -8 4439 69 9 3 chr1 80400560 80401141 -201792523 + L1PA8A LINE L1 5546 6129 -2 789 88 0 0 chr1 80401216 80401329 -201792335 - L1PB1 LINE L1 -1 6150 6038 259 366 97 32 chr1 80402127 80402436 -201791228 + L2 LINE L2 2493 2821 -493 403 304 15 15 chr1 80402489 80402624 -201791040 + L2 LINE L2 2914 3048 -224 2500 119 8 0 chr1 80402917 80403278 -201790386 + THE1B LTR MaLR 1 364 0 8947 137 48 35 chr1 80403285 80404823 -201788841 + THE1B-int LTR MaLR 23 1580 0 2462 122 0 11 chr1 80404823 80405191 -201788473 + THE1B LTR MaLR 1 364 0 316 335 98 37 chr1 80405428 80405592 -201788072 + MIR SINE MIR 23 196 -66 336 333 24 0 chr1 80406362 80406503 -201787161 - MER5A DNA MER1_type -25 164 10 805 182 26 52 chr1 80406516 80406708 -201786956 + MER5A DNA MER1_type 1 187 -2 2088 182 85 11 chr1 80407348 80407782 -201785882 - MLT1C LTR MaLR -1 466 1 4712 165 33 25 chr1 80407920 80407957 -201785707 + L1MA6 LINE L1 4456 4491 -1809 1945 136 3 36 chr1 80407957 80408265 -201785399 + AluSx SINE Alu 1 298 -14 4712 165 33 25 chr1 80408265 80410051 -201783613 + L1MA6 LINE L1 4491 6296 -4 1711 156 34 0 chr1 80410621 80410890 -201782774 - AluSx SINE Alu -28 284 7 180 245 0 0 chr1 80412079 80412132 -201781532 + CT-rich Low_complexity Low_complexity 2 54 0 349 311 43 72 chr1 80412294 80412503 -201781161 - MIR SINE MIR -49 213 11 386 335 39 13 chr1 80412966 80413121 -201780543 + MIR SINE MIR 34 192 -70 241 251 237 10 chr1 80413763 80413914 -201779750 - MIR SINE MIR -40 222 35 337 280 56 89 chr1 80413996 80414210 -201779454 - MLT1I LTR MaLR -5 404 198 1124 188 88 49 chr1 80414272 80414601 -201779063 + MER2 DNA MER2_type 3 344 0 595 317 100 51 chr1 80415398 80415930 -201777734 + L2 LINE L2 2506 3271 -1 696 287 82 43 chr1 80416321 80416603 -201777061 + Tigger8 DNA MER2_type 183 491 -175 1725 134 51 54 chr1 80416603 80416916 -201776748 + AluSx SINE Alu 1 312 0 696 287 82 43 chr1 80416916 80417097 -201776567 + Tigger8 DNA MER2_type 491 664 -2 227 254 17 0 chr1 80417137 80417196 -201776468 - MIR SINE MIR -55 153 94 354 231 0 0 chr1 80417795 80417860 -201775804 - MER3 DNA MER1_type -98 111 47 204 295 191 17 chr1 80418038 80418196 -201775468 + L2 LINE L2 2776 2973 -340 2138 125 61 19 chr1 80419086 80419446 -201774218 - THE1C LTR MaLR 0 375 1 2623 92 3 11 chr1 80420062 80420420 -201773244 - THE1A LTR MaLR 0 355 1 428 264 98 46 chr1 80420470 80420644 -201773020 - MIR SINE MIR -74 188 6 395 227 145 76 chr1 80421147 80421319 -201772345 + MIR SINE MIR 2 185 -23 236 333 0 14 chr1 80421396 80421468 -201772196 - MIR SINE MIR -156 106 36 306 267 17 69 chr1 80422468 80422584 -201771080 + MIR SINE MIR 4 113 -149 777 285 80 64 chr1 80423026 80423401 -201770263 - MLT1K LTR MaLR -8 580 200 354 45 0 0 chr1 80423739 80423783 -201769881 + (TC)n Simple_repeat Simple_repeat 2 45 0 311 359 100 66 chr1 80424371 80424602 -201769062 - L2 LINE L2 0 3272 3050 1666 206 18 35 chr1 80424602 80424999 -201768665 - MLT1B LTR MaLR 0 390 1 311 359 100 66 chr1 80424999 80425229 -201768435 - L2 LINE L2 -222 3050 2796 325 305 25 17 chr1 80425280 80425398 -201768266 - MLT1J2 LTR MaLR -59 391 273 250 280 11 0 chr1 80425436 80425529 -201768135 - MLT1J LTR MaLR -292 219 126 202 172 224 0 chr1 80425543 80425601 -201768063 + MIR3 SINE MIR 135 205 -3 558 360 133 6 chr1 80425641 80426121 -201767543 - L2 LINE L2 -511 2803 2263 2722 85 3 0 chr1 80426809 80427163 -201766501 + THE1A LTR MaLR 1 355 0 11305 107 4 1 chr1 80427163 80428738 -201764926 + THE1A-int LTR MaLR 1 1580 0 2418 110 17 0 chr1 80428744 80429089 -201764575 + THE1A LTR MaLR 3 353 -2 251 253 165 0 chr1 80430134 80430225 -201763439 + L2 LINE L2 2201 2306 -1008 531 255 172 0 chr1 80431338 80431483 -201762181 - MER5A DNA MER1_type -14 175 6 219 36 0 0 chr1 80431923 80431951 -201761713 + (TA)n Simple_repeat Simple_repeat 2 29 0 184 214 56 45 chr1 80433478 80433567 -201760097 + MIR SINE MIR 172 261 -1 353 350 51 25 chr1 80434425 80434582 -201759082 - L2 LINE L2 0 3272 3112 183 218 0 0 chr1 80434672 80434727 -201758937 + (TG)n Simple_repeat Simple_repeat 2 56 0 239 286 57 0 chr1 80434733 80434803 -201758861 - L2 LINE L2 -213 3059 2986 2267 130 8 8 chr1 80434841 80435196 -201758468 + THE1A LTR MaLR 1 355 0 11679 97 3 0 chr1 80435196 80436771 -201756893 + THE1A-int LTR MaLR 1 1580 0 2222 131 17 3 chr1 80436771 80437121 -201756543 + THE1A LTR MaLR 1 355 0 287 161 0 16 chr1 80438687 80438749 -201754915 + (TG)n Simple_repeat Simple_repeat 2 62 0 1693 192 7 3 chr1 80438964 80439266 -201754398 - AluJb SINE Alu -9 303 1 402 161 0 0 chr1 80439404 80439497 -201754167 + (TA)n Simple_repeat Simple_repeat 1 93 0 416 354 156 29 chr1 80439823 80440278 -201753386 + L2 LINE L2 2011 2523 -791 9475 39 1 3 chr1 80440278 80441438 -201752226 + L1P LINE L1 3493 4650 -1496 433 301 50 27 chr1 80441976 80442235 -201751429 - L1ME3A LINE L1 -306 5864 5600 1799 157 0 0 chr1 80442313 80442580 -201751084 + AluSx SINE Alu 1 267 -45 394 70 0 0 chr1 80442580 80442637 -201751027 - MLT2A2 LTR ERVL -396 57 1 1080 97 0 0 chr1 80442718 80442873 -201750791 - MER41B LTR ERV1 0 635 481 7202 106 28 6 chr1 80442888 80443955 -201749709 - MER41-int LTR ERV1 -234 5712 4622 251 253 165 0 chr1 80444750 80444841 -201748823 + L2 LINE L2 2201 2306 -1008 531 255 172 0 chr1 80445953 80446098 -201747566 - MER5A DNA MER1_type -14 175 6 201 39 0 0 chr1 80446538 80446564 -201747100 + (TA)n Simple_repeat Simple_repeat 2 27 0 184 214 56 45 chr1 80448091 80448180 -201745484 + MIR SINE MIR 172 261 -1 353 350 51 25 chr1 80449038 80449195 -201744469 - L2 LINE L2 0 3272 3112 183 218 0 0 chr1 80449285 80449340 -201744324 + (TG)n Simple_repeat Simple_repeat 2 56 0 214 273 76 0 chr1 80449346 80449412 -201744252 - L2 LINE L2 -213 3059 2989 2222 131 17 3 chr1 80449452 80449802 -201743862 + THE1A LTR MaLR 1 355 0 323 152 0 15 chr1 80451368 80451434 -201742230 + (TG)n Simple_repeat Simple_repeat 2 66 0 1693 192 7 3 chr1 80451649 80451951 -201741713 - AluJb SINE Alu -9 303 1 420 158 0 0 chr1 80452089 80452184 -201741480 + (TA)n Simple_repeat Simple_repeat 1 95 0 416 354 156 29 chr1 80452510 80452965 -201740699 + L2 LINE L2 2011 2523 -791 9456 40 1 3 chr1 80452965 80454125 -201739539 + L1P LINE L1 3493 4650 -1496 433 301 50 27 chr1 80454663 80454922 -201738742 - L1ME3A LINE L1 -306 5864 5600 1799 157 0 0 chr1 80455000 80455267 -201738397 + AluSx SINE Alu 1 267 -45 394 70 0 0 chr1 80455267 80455324 -201738340 - MLT2A2 LTR ERVL -396 57 1 1080 97 0 0 chr1 80455405 80455560 -201738104 - MER41B LTR ERV1 0 635 481 13238 143 27 39 chr1 80455575 80458480 -201735184 - MER41-int LTR ERV1 -234 5712 2165 269 129 0 157 chr1 80458484 80458554 -201735110 - MER41-int LTR ERV1 -4283 1663 1605 * 2344 114 26 57 chr1 80458527 80458922 -201734742 - MER41-int LTR ERV1 -4494 1452 1081 706 134 50 0 chr1 80458908 80459027 -201734637 - MER41-int LTR ERV1 -5322 624 500 * 302 350 78 0 chr1 80459082 80459185 -201734479 + L2 LINE L2 3183 3293 -20 382 295 54 27 chr1 80461554 80461703 -201731961 - MIR3 SINE MIR -1 207 55 2255 164 15 26 chr1 80461831 80462299 -201731365 - L1 LINE L1 -933 5213 4751 5144 160 44 19 chr1 80462326 80462862 -201730802 + L1MA6 LINE L1 5226 5747 -553 351 0 0 0 chr1 80462862 80462901 -201730763 + (CA)n Simple_repeat Simple_repeat 2 40 0 5144 160 44 19 chr1 80462901 80463403 -201730261 + L1MA6 LINE L1 5747 6290 -10 4975 136 67 5 chr1 80463460 80464485 -201729179 - L1PA16 LINE L1 -8 6158 5071 586 182 83 0 chr1 80464491 80464623 -201729041 + L1P LINE L1 4785 4927 -1219 197 231 0 0 chr1 80464791 80464830 -201728834 - MIR SINE MIR -216 46 8 395 250 10 20 chr1 80465265 80465365 -201728299 + L2 LINE L2 3173 3271 -1 188 369 0 24 chr1 80465364 80465448 -201728216 - MIR3 SINE MIR -121 87 6 * 263 285 123 8 chr1 80465910 80466040 -201727624 - MIR SINE MIR -4 258 114 234 121 35 35 chr1 80466173 80466231 -201727433 + (TA)n Simple_repeat Simple_repeat 2 59 0 4124 248 34 21 chr1 80466265 80467575 -201726089 + L1M4 LINE L1 3598 4924 -1222 507 386 59 0 chr1 80467613 80467903 -201725761 - MLT1J LTR MaLR -62 449 143 2313 72 10 3 chr1 80469209 80469502 -201724162 - AluSg SINE Alu -15 295 1 861 211 0 23 chr1 80469739 80469910 -201723754 + FRAM SINE Alu 9 175 -1 417 259 42 48 chr1 80470226 80470392 -201723272 - MIR SINE MIR 0 262 98 455 233 148 11 chr1 80471082 80471271 -201722393 - L1MC4a LINE L1 -1911 5897 5683 624 260 79 13 chr1 80471287 80471514 -201722150 + MIR SINE MIR 21 262 0 321 274 0 0 chr1 80471533 80471625 -201722039 - L1MC4a LINE L1 -441 5680 5586 1303 230 25 35 chr1 80471629 80471945 -201721719 - LTR16C LTR ERVL 0 491 179 434 259 52 35 chr1 80471945 80472119 -201721545 + MER97b DNA MER1_type? 1 177 -876 1036 328 36 14 chr1 80472351 80472851 -201720813 - ERVL LTR ERVL -1941 3823 3313 597 262 4 35 chr1 80473786 80473969 -201719695 - MER5B DNA MER1_type 0 178 13 2239 138 8 22 chr1 80474059 80474428 -201719236 - THE1B LTR MaLR 0 364 1 11231 100 14 3 chr1 80474428 80475989 -201717675 - THE1B-int LTR MaLR 0 1580 4 2122 125 8 60 chr1 80475991 80476375 -201717289 - THE1B LTR MaLR 0 364 1 394 238 87 16 chr1 80476375 80476501 -201717163 - MIR SINE MIR -70 192 58 226 330 25 25 chr1 80476750 80476868 -201716796 + MIR SINE MIR 90 207 -55 1543 243 94 34 chr1 80476949 80477418 -201716246 - MLT1D LTR MaLR -8 497 1 240 389 67 0 chr1 80478663 80478753 -201714911 + L2 LINE L2 3151 3246 -26 609 326 138 61 chr1 80480541 80481154 -201712510 + L2 LINE L2 2609 3268 -4 868 248 19 9 chr1 80481522 80481736 -201711928 - MIR SINE MIR -41 221 6 207 189 0 0 chr1 80482967 80483004 -201710660 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 198 161 0 0 chr1 80483556 80483587 -201710077 - L3 LINE CR1 -6 1571 1541 1884 176 77 23 chr1 80483694 80484137 -201709527 - MLT1C LTR MaLR 0 467 1 418 335 49 12 chr1 80485382 80485546 -201708118 + MIR SINE MIR 16 185 -77 2284 105 0 3 chr1 80485969 80486273 -201707391 - AluSq SINE Alu -6 307 5 33 0 0 0 chr1 80486375 80486408 -201707256 + AT_rich Low_complexity Low_complexity 1 33 0 471 278 139 12 chr1 80486952 80487125 -201706539 + MIR SINE MIR 40 234 -28 2377 87 10 0 chr1 80487435 80487734 -201705930 - AluSx SINE Alu 0 312 11 675 286 52 5 chr1 80487929 80488142 -201705522 - MIR SINE MIR -9 253 31 244 324 152 49 chr1 80489031 80489380 -201704284 - L2 LINE L2 0 3272 2888 207 368 38 54 chr1 80489437 80489622 -201704042 - L2 LINE L2 -469 2845 2664 337 323 161 31 chr1 80489881 80490104 -201703560 + MIR SINE MIR 11 262 0 22 56 0 0 chr1 80490802 80490838 -201702826 + AT_rich Low_complexity Low_complexity 1 36 0 2321 42 0 0 chr1 80490866 80491130 -201702534 - AluY SINE Alu -9 302 39 219 216 0 0 chr1 80491445 80491482 -201702182 + MER91 DNA MER1_type 132 168 -28 1205 188 49 17 chr1 80491628 80491916 -201701748 + L1MA9 LINE L1 5983 6279 -33 281 312 11 11 chr1 80493384 80493477 -201700187 + MIR SINE MIR 13 105 -157 920 199 144 76 chr1 80493486 80493827 -201699837 - L2 LINE L2 0 3313 2950 1690 177 34 60 chr1 80493895 80494279 -201699385 - MLT1A2 LTR MaLR 0 374 1 224 301 39 48 chr1 80494286 80494389 -201699275 + MIR SINE MIR 161 262 0 483 281 62 0 chr1 80494563 80494691 -201698973 + L2 LINE L2 3137 3272 0 1051 197 20 0 chr1 80495573 80495776 -201697888 - MLT1E1 LTR MaLR 0 654 448 1135 206 36 4 chr1 80495819 80496066 -201697598 - MLT1E1 LTR MaLR -394 260 6 1957 122 3 76 chr1 80496192 80496521 -201697143 - AluSx SINE Alu -7 305 1 528 260 93 0 chr1 80497127 80497277 -201696387 + MIR SINE MIR 55 218 -44 512 330 30 7 chr1 80497319 80497616 -201696048 + L1PA8 LINE L1 2 305 -7276 14362 183 13 53 chr1 80498634 80499586 -201694078 + L1PA8 LINE L1 2326 3314 -4270 2276 114 7 0 chr1 80499586 80499894 -201693770 - AluSx SINE Alu -2 310 1 14362 183 13 53 chr1 80499894 80500201 -201693463 + L1PA8 LINE L1 3314 3632 -3952 2111 122 14 0 chr1 80500201 80500488 -201693176 - AluSc SINE Alu -18 291 1 14362 183 13 53 chr1 80500488 80503141 -201690523 + L1PA8 LINE L1 3632 6088 -1496 2156 23 12 0 chr1 80503144 80503402 -201690262 - L1PA4 LINE L1 0 6155 5895 * 6577 75 17 4 chr1 80503400 80504640 -201689024 + L1PA4 LINE L1 6086 7344 -266 2266 98 0 19 chr1 80504640 80504955 -201688709 + AluY SINE Alu 1 309 -2 6577 75 17 4 chr1 80504955 80505219 -201688445 + L1PA8 LINE L1 7344 7603 -7 4417 174 41 39 chr1 80505224 80505636 -201688028 - L1P4 LINE L1 -690 5476 5066 2188 138 3 0 chr1 80505636 80505947 -201687717 - AluSx SINE Alu 0 312 1 4417 174 41 39 chr1 80505947 80506887 -201686777 - L1P4 LINE L1 -1100 5066 4130 1291 191 4 4 chr1 80506890 80507136 -201686528 + MLT1C LTR MaLR 174 419 -48 23 33 0 0 chr1 80507267 80507297 -201686367 + AT_rich Low_complexity Low_complexity 1 30 0 214 343 59 10 chr1 80507665 80507767 -201685897 - L2 LINE L2 0 3313 3207 546 16 0 0 chr1 80508525 80508588 -201685076 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1829 150 4 4 chr1 80508594 80508861 -201684803 - AluSx SINE Alu -37 275 9 182 289 101 60 chr1 80509560 80509709 -201683955 + MIR SINE MIR 3 157 -105 274 263 144 25 chr1 80510467 80510585 -201683079 + L2 LINE L2 3182 3313 0 201 254 14 28 chr1 80510771 80510842 -201682822 + CT-rich Low_complexity Low_complexity 2 71 0 343 250 316 7 chr1 80511180 80511316 -201682348 - MER5A DNA MER1_type -3 186 9 374 262 64 87 chr1 80511423 80511595 -201682069 + MIR SINE MIR 20 187 -75 953 204 57 100 chr1 80511722 80512211 -201681453 + MER110A LTR ERV1 1 468 0 280 379 71 33 chr1 80512487 80512669 -201680995 + L2 LINE L2 3083 3271 -1 352 298 77 2 chr1 80513893 80514061 -201679603 - MIR SINE MIR -60 202 20 369 331 133 22 chr1 80514497 80514678 -201678986 - MIR SINE MIR -15 247 47 278 250 27 108 chr1 80515956 80516106 -201677558 + L1ME3A LINE L1 5355 5475 -691 897 229 11 11 chr1 80516106 80516281 -201677383 + FAM SINE Alu 1 175 0 278 250 27 108 chr1 80516281 80516358 -201677306 + L1ME3A LINE L1 5475 5557 -609 527 285 42 107 chr1 80516423 80516571 -201677093 + L1ME3A LINE L1 5587 5743 -427 2492 136 46 5 chr1 80516571 80516982 -201676682 + MSTB1 LTR MaLR 1 428 -4 527 285 42 107 chr1 80516982 80517216 -201676448 + L1ME3A LINE L1 5743 5944 -226 2040 142 3 3 chr1 80517277 80517587 -201676077 + AluSx SINE Alu 1 310 -2 298 291 99 0 chr1 80517845 80517986 -201675678 + L1ME4a LINE L1 5611 5765 -356 241 291 0 0 chr1 80518002 80518057 -201675607 + L2 LINE L2 3213 3267 -5 334 210 97 32 chr1 80518097 80518221 -201675443 + L1ME4a LINE L1 5990 6121 0 417 267 47 27 chr1 80518669 80518819 -201674845 + L2 LINE L2 2237 2389 -925 413 233 66 16 chr1 80518997 80519131 -201674533 - MLT1I LTR MaLR -243 166 18 302 143 0 0 chr1 80521313 80521362 -201672302 + MER53 DNA DNA 1 49 -140 261 165 25 25 chr1 80521455 80521534 -201672130 + MER53 DNA DNA 107 185 -4 342 319 138 17 chr1 80522168 80522400 -201671264 - MIR SINE MIR 0 262 3 1112 210 69 115 chr1 80522644 80523001 -201670663 - MER66A LTR ERV1 -1 477 193 2108 109 0 3 chr1 80523001 80523327 -201670337 - AluSc SINE Alu 0 325 1 1112 210 69 115 chr1 80523327 80523420 -201670244 - MER66A LTR ERV1 -285 193 97 2077 155 8 11 chr1 80523520 80523874 -201669790 - MER66A-int LTR ERV1 0 6676 6324 1122 150 22 44 chr1 80523952 80524136 -201669528 - MER66-int LTR ERV1 -1848 4828 4648 2153 112 7 7 chr1 80524136 80524432 -201669232 - AluSg SINE Alu -14 296 1 1122 150 22 44 chr1 80524432 80524474 -201669190 - MER66-int LTR ERV1 -2028 4648 4607 207 0 0 0 chr1 80524492 80524515 -201669149 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 456 213 9 37 chr1 80524570 80524678 -201668986 - MER4D LTR ERV1 -712 160 56 846 124 7 20 chr1 80524679 80524832 -201668832 - MER66-int LTR ERV1 -2221 4455 4305 16767 168 24 8 chr1 80524841 80527955 -201665709 + L1PA14 LINE L1 4 3068 -4531 2181 115 109 0 chr1 80527955 80528295 -201665369 + MER51B LTR ERV1 1 377 0 16767 168 24 8 chr1 80528295 80532234 -201661430 + L1PA14 LINE L1 3068 7444 -155 1215 78 6 0 chr1 80532334 80532500 -201661164 + L1PA14 LINE L1 7433 7599 0 285 130 0 19 chr1 80532521 80532575 -201661089 - MER66-int LTR ERV1 -4277 2399 2347 * 3633 233 78 96 chr1 80532566 80534555 -201659109 - MER66-int LTR ERV1 -2386 4290 2336 1298 167 62 0 chr1 80534551 80534778 -201658886 - MER66-int LTR ERV1 -4518 2158 1918 * 345 335 88 12 chr1 80534967 80535137 -201658527 + MIR3 SINE MIR 19 201 -7 195 222 89 0 chr1 80535159 80535204 -201658460 - L2 LINE L2 -1 3271 3223 299 224 54 88 chr1 80535676 80535823 -201657841 - MIR SINE MIR -56 206 65 401 352 48 0 chr1 80536019 80536164 -201657500 - L2 LINE L2 0 3272 3121 1985 195 48 94 chr1 80536306 80536891 -201656773 + MLT1F1 LTR MaLR 10 567 0 354 299 7 0 chr1 80536939 80537086 -201656578 + L1MCa LINE L1 1137 1284 -5256 2148 264 62 44 chr1 80537115 80537215 -201656449 + L1MCa LINE L1 1608 1705 -4835 1448 221 14 11 chr1 80537215 80537495 -201656169 + AluJo SINE Alu 1 281 -31 2148 264 62 44 chr1 80537495 80537958 -201655706 + L1MCa LINE L1 1705 2158 -4382 2389 65 7 3 chr1 80537958 80538266 -201655398 - AluY SINE Alu -2 309 1 2148 264 62 44 chr1 80538266 80539730 -201653934 + L1MCa LINE L1 2158 3660 -2880 420 276 146 51 chr1 80540522 80540816 -201652848 + L1MCa LINE L1 1550 1797 -4743 335 226 161 28 chr1 80541011 80541161 -201652503 - MLT1L LTR MaLR -193 390 231 985 206 113 7 chr1 80541679 80541971 -201651693 + MER5C DNA MER1_type 1 323 -1 2222 58 0 25 chr1 80542039 80542317 -201651347 - AluY SINE Alu -14 297 27 516 309 74 26 chr1 80543098 80543409 -201650255 + L1MCa LINE L1 4196 4521 -2019 510 62 0 0 chr1 80544611 80544675 -201648989 - Alu SINE Alu -13 299 236 1697 142 17 19 chr1 80544738 80545084 -201648580 - MER4A LTR ERV1 0 664 261 436 204 10 10 chr1 80545084 80545182 -201648482 - MER4A LTR ERV1 -566 98 1 956 323 45 40 chr1 80545315 80545922 -201647742 + L1PA16 LINE L1 788 1397 -6177 346 295 56 13 chr1 80545920 80546118 -201647546 + L1PA16 LINE L1 2086 2298 -5276 * 11374 187 67 54 chr1 80546317 80547733 -201645931 + L1PA13 LINE L1 1 1397 -5400 6967 66 26 0 chr1 80547733 80548607 -201645057 - MER11D LTR ERVK 0 897 1 11374 187 67 54 chr1 80548607 80550020 -201643644 + L1PA13 LINE L1 1397 2790 -4007 1991 151 146 11 chr1 80550020 80550397 -201643267 - MSTA LTR MaLR 0 428 1 11374 187 67 54 chr1 80550397 80552190 -201641474 + L1PA13 LINE L1 2790 4698 -2099 6229 96 6 16 chr1 80552190 80552233 -201641431 + L1PA13 LINE L1 4918 4960 -1854 1777 100 8 4 chr1 80552233 80552472 -201641192 + AluY SINE Alu 61 300 -11 6229 96 6 16 chr1 80552472 80554320 -201639344 + L1PA13 LINE L1 4960 6808 -6 21 0 0 0 chr1 80554960 80554981 -201638683 + AT_rich Low_complexity Low_complexity 1 21 0 12736 220 31 16 chr1 80555059 80560198 -201633466 + L1PA16 LINE L1 2416 7604 0 365 371 68 11 chr1 80560252 80560532 -201633132 + L1M4 LINE L1 4763 5058 -1088 1217 66 0 12 chr1 80560638 80560805 -201632859 + MER9 LTR ERVK 1 165 -346 219 222 0 0 chr1 80562130 80562175 -201631489 + (CAGT)n Simple_repeat Simple_repeat 4 48 0 5230 226 115 49 chr1 80562291 80563135 -201630529 + L1MDa LINE L1 14 800 -5740 8428 38 0 0 chr1 80563135 80564915 -201628749 - L1PA4 LINE L1 0 6155 4364 5230 226 115 49 chr1 80564915 80565141 -201628523 + L1MDa LINE L1 800 1010 -5530 2169 134 7 0 chr1 80565141 80565439 -201628225 + AluSx SINE Alu 1 300 -12 5230 226 115 49 chr1 80565439 80567762 -201625902 + L1MDa LINE L1 1010 3844 -2696 618 222 117 19 chr1 80567865 80568122 -201625542 + L1MDa LINE L1 4686 4967 -1573 480 204 6 102 chr1 80568123 80568165 -201625499 + L1MD1 LINE L1 5922 5966 -276 2330 110 3 0 chr1 80568165 80568466 -201625198 + AluSx SINE Alu 1 302 -10 480 204 6 102 chr1 80568466 80568590 -201625074 + L1MD1 LINE L1 5966 6072 -170 226 330 55 37 chr1 80568660 80568769 -201624895 - MIR SINE MIR -77 131 21 260 203 16 0 chr1 80568778 80568842 -201624822 + MER116 DNA Mariner 1 65 -15 199 379 35 17 chr1 80569598 80569714 -201623950 + MIR SINE MIR 34 141 -67 27 0 0 0 chr1 80569919 80569946 -201623718 + AT_rich Low_complexity Low_complexity 1 27 0 815 236 79 19 chr1 80570648 80570864 -201622800 + MIR SINE MIR 3 231 -31 194 339 0 0 chr1 80570936 80570998 -201622666 - L2 LINE L2 -226 3046 2985 244 254 127 92 chr1 80571239 80571412 -201622252 - L2 LINE L2 -12 3301 3123 21807 190 16 26 chr1 80571575 80577462 -201616202 + L1PA11 LINE L1 13 5848 -635 3873 90 8 0 chr1 80577465 80577996 -201615668 + L1PA11 LINE L1 5953 6487 -2 190 289 40 0 chr1 80578052 80578128 -201615536 - MIR SINE MIR -58 204 126 27 0 0 0 chr1 80578311 80578338 -201615326 + AT_rich Low_complexity Low_complexity 1 27 0 693 262 237 25 chr1 80579154 80579551 -201614113 + L2 LINE L2 2815 3295 -18 842 295 24 24 chr1 80579759 80580057 -201613607 - MER89 LTR ERV1 -261 298 1 359 256 136 21 chr1 80580559 80580750 -201612914 - MLT1J LTR MaLR -200 311 99 1838 131 49 0 chr1 80582393 80582660 -201611004 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr1 80582661 80582686 -201610978 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 212 303 15 0 chr1 80582988 80583054 -201610610 + GA-rich Low_complexity Low_complexity 3 69 0 1295 72 5 46 chr1 80583232 80583426 -201610238 - L1PA5 LINE L1 -3 6151 5966 1365 205 116 19 chr1 80584093 80584454 -201609210 - MSTD LTR MaLR 0 396 1 651 213 77 19 chr1 80584462 80584617 -201609047 + MER5B DNA MER1_type 14 177 -1 310 309 16 57 chr1 80584664 80584787 -201608877 + MIR3 SINE MIR 46 163 -45 219 332 57 82 chr1 80585330 80585574 -201608090 - L2 LINE L2 -19 3253 3016 243 275 25 25 chr1 80586041 80586121 -201607543 - MER5A DNA MER1_type 0 189 110 185 297 16 62 chr1 80586220 80586284 -201607380 + MIR SINE MIR 21 81 -127 200 79 26 53 chr1 80587170 80587208 -201606456 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 550 352 128 22 chr1 80587287 80587968 -201605696 - L2 LINE L2 -1740 1574 822 457 197 221 19 chr1 80587981 80588189 -201605475 + MER112 DNA MER1_type 11 260 0 369 322 92 0 chr1 80588201 80588353 -201605311 - L2 LINE L2 -2526 788 623 280 57 0 0 chr1 80588353 80588388 -201605276 - U2 snRNA snRNA -153 35 1 188 323 0 31 chr1 80588826 80588891 -201604773 + MIR SINE MIR 95 157 -105 1035 147 5 0 chr1 80588903 80589087 -201604577 + L1MA6 LINE L1 6111 6295 -5 25 31 0 0 chr1 80589092 80589124 -201604540 + AT_rich Low_complexity Low_complexity 1 32 0 291 312 11 11 chr1 80589124 80589217 -201604447 - L3 LINE CR1 -9 1568 1476 217 280 93 0 chr1 80589294 80589369 -201604295 - MIR SINE MIR -57 205 124 23 92 0 0 chr1 80590077 80590142 -201603522 + AT_rich Low_complexity Low_complexity 1 65 0 295 331 23 23 chr1 80590294 80590427 -201603237 + MER5B DNA MER1_type 1 133 -45 24 53 0 0 chr1 80590428 80590466 -201603198 + AT_rich Low_complexity Low_complexity 1 38 0 261 219 24 61 chr1 80590489 80590571 -201603093 + MER5B DNA MER1_type 100 178 0 222 281 59 126 chr1 80590794 80591064 -201602600 - L2 LINE L2 -7 3265 3014 1077 256 147 5 chr1 80591098 80591485 -201602179 - MER110 LTR ERV1 -12 479 38 1856 144 22 151 chr1 80591490 80591900 -201601764 - LTR18A LTR ERVL 0 357 1 296 200 0 0 chr1 80592065 80592115 -201601549 - HERVL18 LTR ERVL -789 5258 5209 633 137 0 0 chr1 80592115 80592210 -201601454 - HERVL18 LTR ERVL -1559 4488 4394 5394 161 0 1 chr1 80592212 80593073 -201600591 - HERVL18 LTR ERVL -2468 3579 2720 1119 158 130 0 chr1 80593072 80593349 -201600315 - HERVL18 LTR ERVL -3063 2334 2078 * 2455 183 5 20 chr1 80593348 80594395 -201599269 - HERVL18 LTR ERVL -4237 1810 9 1823 126 8 153 chr1 80594420 80594818 -201598846 - LTR18A LTR ERVL -17 340 1 888 107 14 0 chr1 80595013 80595153 -201598511 + THE1C-int LTR MaLR 1439 1580 0 2016 121 73 20 chr1 80595154 80595509 -201598155 + THE1C LTR MaLR 2 375 0 1300 161 22 33 chr1 80595509 80595783 -201597881 + THE1C LTR MaLR 105 375 0 5567 201 9 14 chr1 80595785 80597060 -201596604 - L1 LINE L1 -1558 4588 3321 778 364 17 14 chr1 80597053 80597407 -201596257 - L1PA13 LINE L1 -6432 355 1 * 516 164 0 23 chr1 80597972 80598100 -201595564 + (TA)n Simple_repeat Simple_repeat 2 126 0 309 246 123 8 chr1 80598100 80598230 -201595434 - MIR SINE MIR -4 258 114 29 47 0 0 chr1 80598345 80598388 -201595276 + AT_rich Low_complexity Low_complexity 1 43 0 221 338 0 0 chr1 80598625 80598699 -201594965 + (TA)n Simple_repeat Simple_repeat 2 75 0 864 195 37 107 chr1 80598699 80599151 -201594513 - MLT2D LTR ERVL -40 480 3 708 212 13 20 chr1 80599332 80599483 -201594181 - MER5B DNA MER1_type -2 176 27 640 276 38 48 chr1 80600175 80600490 -201593174 + LTR16A1 LTR ERVL 146 457 0 5593 182 18 20 chr1 80600800 80601027 -201592637 + L1MC1 LINE L1 4628 4854 -1479 2281 118 0 0 chr1 80601027 80601333 -201592331 - AluSp SINE Alu -7 306 1 5593 182 18 20 chr1 80601333 80602811 -201590853 + L1MC1 LINE L1 4854 6333 0 229 292 26 45 chr1 80602837 80602991 -201590673 - L1MEc LINE L1 -5515 881 731 * 705 280 87 27 chr1 80602987 80603549 -201590115 - L1MEc LINE L1 -4454 2126 1499 665 232 30 0 chr1 80603555 80603719 -201589945 - MER45A DNA AcHobo 0 178 10 1480 287 61 42 chr1 80603737 80604163 -201589501 - L1MEc LINE L1 -4678 1458 1042 2052 184 3 16 chr1 80604163 80604533 -201589131 + MLT1A1 LTR MaLR 1 365 0 1480 287 61 42 chr1 80604533 80605230 -201588434 - L1MEc LINE L1 -5094 1042 51 1908 126 128 72 chr1 80605353 80605758 -201587906 + MSTA LTR MaLR 1 428 0 27 62 0 0 chr1 80606553 80606601 -201587063 + AT_rich Low_complexity Low_complexity 1 48 0 21 71 0 0 chr1 80607014 80607056 -201586608 + AT_rich Low_complexity Low_complexity 1 42 0 7074 53 19 0 chr1 80607181 80608775 -201584889 - L1PA7 LINE L1 0 6154 4535 3715 66 29 0 chr1 80608775 80609290 -201584374 + L1PA7 LINE L1 4021 4550 -1596 394 324 36 81 chr1 80609456 80609678 -201583986 + L2 LINE L2 3030 3241 -31 1123 15 0 8 chr1 80610395 80610577 -201583087 + L1PA2 LINE L1 6020 6200 0 418 331 43 0 chr1 80611272 80611411 -201582253 + MIR3 SINE MIR 40 184 -24 6832 44 10 0 chr1 80611813 80612706 -201580958 + L1PA5 LINE L1 5233 6131 -23 402 21 0 0 chr1 80612711 80612758 -201580906 + (GA)n Simple_repeat Simple_repeat 2 48 0 252 0 0 0 chr1 80612786 80612814 -201580850 + (T)n Simple_repeat Simple_repeat 1 28 0 191 59 0 29 chr1 80612840 80612874 -201580790 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 356 170 47 140 chr1 80613085 80613214 -201580450 + FLAM_A SINE Alu 43 125 -8 264 294 0 0 chr1 80614753 80614838 -201578826 - MLT1I LTR MaLR -7 402 318 288 255 184 21 chr1 80614932 80615073 -201578591 - MLT1J2 LTR MaLR -245 205 42 198 208 0 0 chr1 80615238 80615286 -201578378 + (TA)n Simple_repeat Simple_repeat 2 49 0 354 301 17 0 chr1 80615611 80615784 -201577880 + L1M4 LINE L1 3634 3809 -2337 669 299 102 44 chr1 80615904 80616151 -201577513 + L1M4 LINE L1 3832 4063 -2083 2354 96 0 3 chr1 80616151 80616453 -201577211 + AluSx SINE Alu 3 303 -9 669 299 102 44 chr1 80616453 80616758 -201576906 + L1M4 LINE L1 4063 4420 -1726 5626 89 23 8 chr1 80616758 80617582 -201576082 + L1MA2 LINE L1 5469 6304 0 669 299 102 44 chr1 80617582 80617599 -201576065 + L1M4 LINE L1 4420 4435 -1711 1635 132 8 8 chr1 80617625 80617890 -201575774 + L1MC1 LINE L1 6069 6333 0 240 291 28 7 chr1 80617892 80618033 -201575631 + L1M4 LINE L1 4406 4549 -1597 21 71 0 0 chr1 80618061 80618103 -201575561 + AT_rich Low_complexity Low_complexity 1 42 0 724 214 210 0 chr1 80618251 80618508 -201575156 - MLT1G LTR MaLR -3 587 277 22 35 0 0 chr1 80618723 80618752 -201574912 + AT_rich Low_complexity Low_complexity 1 29 0 2009 147 3 13 chr1 80618861 80619173 -201574491 - AluJb SINE Alu -3 309 1 191 345 0 0 chr1 80619796 80619851 -201573813 + L2 LINE L2 3205 3259 -13 22 35 0 0 chr1 80620460 80620489 -201573175 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 80620579 80620600 -201573064 + AT_rich Low_complexity Low_complexity 1 21 0 289 286 12 12 chr1 80620996 80621080 -201572584 + L2 LINE L2 3225 3308 -5 349 325 65 12 chr1 80621137 80621306 -201572358 - MIR SINE MIR -22 240 63 42394 36 0 1 chr1 80621496 80627663 -201566001 + L1PA3 LINE L1 1 6159 0 2591 77 122 10 chr1 80628783 80629186 -201564478 - LTR7 LTR ERV1 -2 448 1 2264 93 48 13 chr1 80629186 80629563 -201564101 - HERVH LTR ERV1 0 7713 7324 1253 134 23 9 chr1 80629563 80629780 -201563884 - HERVH LTR ERV1 -1894 5819 5600 3983 146 6 1 chr1 80629784 80630440 -201563224 - HERVH LTR ERV1 -2567 5146 4488 3189 108 6 6 chr1 80630442 80630944 -201562720 - HERVH LTR ERV1 -3720 3993 3492 805 131 41 0 chr1 80630934 80631079 -201562585 - HERVH LTR ERV1 -4423 3290 3140 * 18735 88 41 14 chr1 80631073 80633980 -201559684 - HERVH LTR ERV1 -4726 2987 1 2188 72 8 2 chr1 80633982 80634339 -201559325 - LTR7 LTR ERV1 -2 448 1 214 323 87 39 chr1 80634879 80635006 -201558658 + MIR3 SINE MIR 55 187 -21 521 131 0 56 chr1 80635016 80635123 -201558541 + L1PB4 LINE L1 6055 6155 -1 378 222 12 12 chr1 80635181 80635262 -201558402 + L2 LINE L2 3225 3305 -8 1178 200 90 60 chr1 80635600 80636066 -201557598 - LTR24B LTR ERV1 -7 569 90 22 0 0 0 chr1 80636147 80636169 -201557495 + AT_rich Low_complexity Low_complexity 1 22 0 2109 131 9 19 chr1 80636328 80636786 -201556878 - LTR26B LTR ERV1 0 531 1 359 203 308 0 chr1 80637123 80637266 -201556398 - MIR SINE MIR 0 262 76 908 263 64 80 chr1 80637847 80638059 -201555605 + L2 LINE L2 2818 3032 -281 2460 38 24 0 chr1 80638059 80638352 -201555312 + AluY SINE Alu 1 300 -11 908 263 64 80 chr1 80638352 80638641 -201555023 + L2 LINE L2 3032 3311 -2 1489 126 27 0 chr1 80638761 80638984 -201554680 + MER30 DNA MER1_type 1 229 -1 3963 82 2 5 chr1 80639200 80639760 -201553904 + L1PA10 LINE L1 5462 6019 -149 1062 68 41 0 chr1 80639934 80640080 -201553584 + L1PA11 LINE L1 6021 6172 -2 332 251 34 97 chr1 80640261 80640408 -201553256 + MIR SINE MIR 25 160 -65 768 264 50 28 chr1 80640417 80640820 -201552844 - LTR33 LTR ERVL -54 467 20 464 193 24 0 chr1 80642248 80642331 -201551333 - L2 LINE L2 -610 2704 2620 387 41 0 0 chr1 80642338 80642387 -201551277 + (CA)n Simple_repeat Simple_repeat 1 49 0 774 97 0 0 chr1 80642975 80643088 -201550576 + (GGAA)n Simple_repeat Simple_repeat 2 114 0 301 333 117 12 chr1 80643090 80643261 -201550403 + MIR3 SINE MIR 19 207 -1 387 263 172 24 chr1 80643598 80643807 -201549857 + MIR SINE MIR 20 259 -3 25 0 0 0 chr1 80645163 80645188 -201548476 + AT_rich Low_complexity Low_complexity 1 25 0 326 343 0 9 chr1 80645375 80645480 -201548184 + MIR SINE MIR 1 104 -158 236 234 57 65 chr1 80646353 80646477 -201547187 + MLT1H LTR MaLR 50 172 -377 302 287 0 40 chr1 80647160 80647261 -201546403 + L2 LINE L2 3213 3309 -4 1377 190 0 84 chr1 80647331 80647670 -201545994 + AluJo SINE Alu 1 313 0 571 266 38 101 chr1 80647792 80648059 -201545605 - MIR SINE MIR -1 261 12 603 326 84 12 chr1 80648969 80649510 -201544154 - MLT1L LTR MaLR -2 613 3 248 294 29 0 chr1 80649625 80649693 -201543971 - MIR SINE MIR -70 138 69 1082 136 6 11 chr1 80650650 80650826 -201542838 - Tigger2 DNA MER2_type -10 2708 2534 2981 69 15 0 chr1 80650826 80651219 -201542445 + MLT2A1 LTR ERVL 1 399 -45 209 247 27 0 chr1 80651234 80651307 -201542357 + (TA)n Simple_repeat Simple_repeat 1 75 0 300 51 271 0 chr1 80651308 80651367 -201542297 + MLT2A1 LTR ERVL 370 444 0 12211 138 78 30 chr1 80651367 80653520 -201540144 - Tigger2 DNA MER2_type -170 2548 268 2455 57 0 7 chr1 80653520 80653819 -201539845 - AluY SINE Alu -14 297 1 12211 138 78 30 chr1 80653819 80654036 -201539628 - Tigger2 DNA MER2_type -2450 268 63 1270 39 0 22 chr1 80654036 80654214 -201539450 + L1PA13 LINE L1 5930 6103 -60 616 88 0 20 chr1 80654228 80654330 -201539334 - Tigger2 DNA MER2_type -1708 1010 911 807 141 35 14 chr1 80654330 80654472 -201539192 - Tigger2 DNA MER2_type -1913 805 661 396 83 17 0 chr1 80654509 80654569 -201539095 - Tigger2 DNA MER2_type -2657 61 1 439 255 131 0 chr1 80654601 80654754 -201538910 + L1M4 LINE L1 3043 3215 -2931 1605 165 92 0 chr1 80654962 80655278 -201538386 - MER7A DNA MER2_type -2 344 2 25 0 0 0 chr1 80655320 80655345 -201538319 + AT_rich Low_complexity Low_complexity 1 25 0 822 272 82 13 chr1 80655436 80655673 -201537991 + MIR SINE MIR 3 254 -8 189 425 0 0 chr1 80655694 80655781 -201537883 - MIR SINE MIR -92 116 30 3323 160 51 19 chr1 80656568 80657305 -201536359 + LTR1B LTR ERV1 1 785 0 539 354 41 21 chr1 80658470 80658713 -201534951 + MIR SINE MIR 1 248 -14 528 240 67 49 chr1 80658770 80658995 -201534669 - L2 LINE L2 -57 3256 3028 22 0 0 0 chr1 80659045 80659067 -201534597 + AT_rich Low_complexity Low_complexity 1 22 0 347 253 189 0 chr1 80659068 80659163 -201534501 + L2 LINE L2 3193 3305 -8 218 387 80 29 chr1 80659923 80660161 -201533503 - MIR SINE MIR -5 257 8 1890 143 16 60 chr1 80661084 80661468 -201532196 - MLT1B LTR MaLR 0 390 24 210 321 60 24 chr1 80661487 80661635 -201532029 + L2 LINE L2 1902 2058 -1256 1733 171 0 39 chr1 80661635 80661945 -201531719 - AluJo SINE Alu -10 302 5 210 321 60 24 chr1 80661945 80661964 -201531700 + L2 LINE L2 2058 2075 -1239 473 261 211 12 chr1 80662139 80662300 -201531364 - MIR SINE MIR -6 256 64 246 413 11 0 chr1 80662335 80662427 -201531237 + L2 LINE L2 3136 3228 -44 424 334 131 55 chr1 80662500 80663632 -201530032 + L2 LINE L2 2038 3264 -8 708 153 0 17 chr1 80664739 80664857 -201528807 + FLAM_C SINE Alu 1 116 -27 251 70 0 47 chr1 80664866 80664909 -201528755 + (GGAAA)n Simple_repeat Simple_repeat 4 44 0 939 264 98 41 chr1 80665025 80665484 -201528180 + LTR33 LTR ERVL 1 485 -36 642 175 0 51 chr1 80665690 80665999 -201527665 + AluJb SINE Alu 183 484 0 522 216 82 0 chr1 80667122 80667256 -201526408 + L1ME3A LINE L1 6011 6155 -15 1534 120 0 4 chr1 80667685 80667919 -201525745 + LOR1a LTR ERV1 1 233 -264 1359 285 85 8 chr1 80668058 80668561 -201525103 + L2 LINE L2 2783 3313 0 5036 113 52 60 chr1 80668629 80669528 -201524136 - THE1B-int LTR MaLR -688 892 1 1134 112 6 0 chr1 80669528 80669698 -201523966 - THE1B LTR MaLR 0 364 194 874 292 111 55 chr1 80670373 80671005 -201522659 + L2 LINE L2 2662 3312 -1 594 138 0 0 chr1 80671652 80671739 -201521925 + FLAM_C SINE Alu 37 123 -20 237 65 0 0 chr1 80671818 80671849 -201521815 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 599 294 112 7 chr1 80672021 80672297 -201521367 + L1M3c LINE L1 826 1130 -5011 740 292 267 20 chr1 80672967 80673562 -201520102 + L1MA6 LINE L1 215 956 -5893 391 355 57 7 chr1 80674011 80674293 -201519371 + L1PA15-16 LINE L1 622 917 -5286 2401 224 41 20 chr1 80674293 80675275 -201518389 + L1PA15 LINE L1 690 1706 -4497 4978 213 8 12 chr1 80675276 80676462 -201517202 + L1MA6 LINE L1 3904 5085 -1763 2837 199 19 57 chr1 80676439 80676769 -201516895 + L1MA6 LINE L1 5324 5665 -1337 * 1882 78 66 0 chr1 80676769 80677038 -201516626 + AluY SINE Alu 27 311 0 2837 199 19 57 chr1 80677038 80678155 -201515509 + L1MA6 LINE L1 5665 6743 -259 * 4660 146 20 7 chr1 80677413 80678253 -201515411 + L1PB4 LINE L1 5995 6845 -13 13028 207 42 0 chr1 80678378 80678541 -201515123 + L1PA15 LINE L1 2295 2450 -3772 1975 167 0 3 chr1 80678541 80678853 -201514811 + AluSx SINE Alu 1 311 -1 13028 207 42 0 chr1 80678853 80682624 -201511040 + L1PA15 LINE L1 2450 6221 -1 180 125 0 0 chr1 80683398 80683430 -201510234 + (CAGAGA)n Simple_repeat Simple_repeat 1 32 0 246 32 0 0 chr1 80683976 80684007 -201509657 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1635 95 0 5 chr1 80684228 80684438 -201509226 + AluSg/x SINE Alu 89 297 -15 428 90 0 26 chr1 80684442 80684520 -201509144 + L1PB1 LINE L1 6074 6149 -2 376 277 66 30 chr1 80685487 80685653 -201508011 + MIR SINE MIR 91 262 0 181 219 0 0 chr1 80686523 80686555 -201507109 - L2 LINE L2 -8 3264 3233 2034 189 56 12 chr1 80686637 80687045 -201506619 + MSTA LTR MaLR 3 428 0 8582 179 13 18 chr1 80687045 80688689 -201504975 + MSTA-int LTR MaLR 1 1637 -14 928 170 87 60 chr1 80688707 80688972 -201504692 + MSTA LTR MaLR 1 272 -156 592 136 34 34 chr1 80689016 80689134 -201504530 - MSTA LTR MaLR -32 396 279 190 318 37 131 chr1 80689649 80690023 -201503641 - L2 LINE L2 -43 3229 2891 2192 113 0 13 chr1 80690349 80690650 -201503014 - AluSx SINE Alu -15 297 1 225 357 136 26 chr1 80690707 80691046 -201502618 - L2 LINE L2 -98 3215 2840 204 339 0 0 chr1 80691861 80691920 -201501744 - L2 LINE L2 -5 3308 3250 277 313 10 42 chr1 80692064 80692160 -201501504 - L2 LINE L2 -213 3059 2967 714 221 67 69 chr1 80693165 80693386 -201500278 + MIR SINE MIR 18 237 -25 350 234 48 89 chr1 80693413 80693537 -201500127 + L2 LINE L2 3154 3272 0 487 308 124 66 chr1 80693651 80693998 -201499666 - L2 LINE L2 -1 3271 2905 192 426 31 12 chr1 80694093 80694349 -201499315 + L2 LINE L2 2716 2976 -338 312 278 14 76 chr1 80694398 80694542 -201499122 + MER112 DNA MER1_type 125 259 -1 200 188 50 38 chr1 80695302 80695382 -201498282 + CT-rich Low_complexity Low_complexity 3 83 0 301 150 0 17 chr1 80696473 80696533 -201497131 - L1MA6 LINE L1 -1 6299 6241 1947 188 0 0 chr1 80697350 80697696 -201495968 - MER6 DNA MER2_type 0 865 260 621 183 20 38 chr1 80697676 80697824 -201495840 - MER6A DNA MER2_type -70 535 -4 * 21 0 0 0 chr1 80697852 80697873 -201495791 + AT_rich Low_complexity Low_complexity 1 21 0 323 282 117 0 chr1 80697901 80698004 -201495660 + MIR3 SINE MIR 51 165 -43 328 299 39 16 chr1 80698199 80698326 -201495338 + MIR SINE MIR 28 157 -105 235 272 29 58 chr1 80699419 80699522 -201494142 - MIR SINE MIR -77 185 86 207 285 56 12 chr1 80699904 80700010 -201493654 - MIR SINE MIR -35 173 64 1959 74 4 0 chr1 80700283 80700550 -201493114 + AluY SINE Alu 37 304 0 2035 205 126 13 chr1 80700550 80701154 -201492510 + L1MDa LINE L1 1639 2310 -4230 678 189 55 4 chr1 80701153 80701390 -201492274 + L1MD2 LINE L1 6048 6345 -14 * 1220 138 0 0 chr1 80701620 80701794 -201491870 - AluSq SINE Alu -11 302 129 23 0 0 0 chr1 80701892 80701915 -201491749 + AT_rich Low_complexity Low_complexity 1 23 0 4388 196 34 23 chr1 80702565 80703280 -201490384 - L1MB2 LINE L1 0 6171 5465 1645 139 185 19 chr1 80703280 80703647 -201490017 - MSTA LTR MaLR 0 428 1 4388 196 34 23 chr1 80703647 80704347 -201489317 - L1MB2 LINE L1 -706 5465 4748 430 282 107 21 chr1 80704380 80704763 -201488901 - L1MC5 LINE L1 -167 7794 7379 414 338 24 45 chr1 80705515 80705805 -201487859 - L1ME3A LINE L1 -286 5884 5601 319 310 84 60 chr1 80705807 80705885 -201487779 - L1ME3A LINE L1 -614 5548 5473 2301 149 5 8 chr1 80705885 80706261 -201487403 - THE1C LTR MaLR 0 375 1 319 310 84 60 chr1 80706261 80706466 -201487198 - L1ME3A LINE L1 -689 5473 5258 562 347 3 0 chr1 80706555 80706804 -201486860 + (TCTCTG)n Simple_repeat Simple_repeat 1 249 0 279 304 0 0 chr1 80706834 80706969 -201486695 + CT-rich Low_complexity Low_complexity 2 136 0 1945 116 35 3 chr1 80707154 80707439 -201486225 + AluY SINE Alu 1 294 -17 24 53 0 0 chr1 80708722 80708760 -201484904 + AT_rich Low_complexity Low_complexity 1 38 0 293 156 100 11 chr1 80709377 80709467 -201484197 + L1MDa LINE L1 1683 1780 -4760 2024 128 67 15 chr1 80709758 80710101 -201483563 + THE1B LTR MaLR 4 364 0 394 335 104 0 chr1 80711226 80711399 -201482265 + MIR SINE MIR 56 246 -16 746 260 52 115 chr1 80711504 80711874 -201481790 + L2 LINE L2 2864 3256 -57 2016 154 8 11 chr1 80711874 80712230 -201481434 - THE1A LTR MaLR 0 355 1 11670 101 1 3 chr1 80712230 80713813 -201479851 - THE1A-int LTR MaLR 0 1580 1 2251 140 6 8 chr1 80713813 80714169 -201479495 - THE1A LTR MaLR 0 355 1 746 260 52 115 chr1 80714169 80714276 -201479388 + L2 LINE L2 3253 3313 0 223 368 17 17 chr1 80716042 80716159 -201477505 - MIR3 SINE MIR -16 192 76 189 0 0 0 chr1 80717408 80717429 -201476235 + (A)n Simple_repeat Simple_repeat 1 21 0 268 231 0 62 chr1 80717713 80717778 -201475886 + MLT1J2 LTR MaLR 390 450 0 308 43 0 21 chr1 80717953 80718000 -201475664 + MADE1 DNA Mariner 1 46 -34 314 354 62 7 chr1 80718106 80718250 -201475414 + MLT1I LTR MaLR 244 395 -14 413 265 0 6 chr1 80718279 80718445 -201475219 + (TA)n Simple_repeat Simple_repeat 2 166 0 1450 187 15 0 chr1 80719228 80719501 -201474163 + L1MD3 LINE L1 7711 7987 -8 500 144 89 0 chr1 80719701 80719791 -201473873 - MER4A LTR ERV1 -566 98 1 344 304 111 29 chr1 80720173 80720380 -201473284 + MIR SINE MIR 31 254 -8 2473 50 0 3 chr1 80720455 80720757 -201472907 + AluY SINE Alu 1 301 -10 605 239 104 22 chr1 80721749 80722104 -201471560 - L1M4 LINE L1 -854 5528 5145 391 308 118 9 chr1 80722188 80722616 -201471048 - L1M4 LINE L1 -1276 5106 4583 333 282 48 40 chr1 80722695 80722819 -201470845 + L2 LINE L2 3188 3312 -1 390 293 164 12 chr1 80722826 80723124 -201470540 - L1M4 LINE L1 -2123 4259 3925 802 197 32 18 chr1 80723135 80723353 -201470311 - L1M4 LINE L1 -3905 2479 2259 2167 113 51 25 chr1 80723363 80723718 -201469946 - THE1B LTR MaLR 0 364 1 10656 90 19 59 chr1 80723723 80725360 -201468304 - THE1B-int LTR MaLR -6 1574 3 2192 122 51 20 chr1 80725362 80725715 -201467949 - THE1B LTR MaLR 0 364 1 392 303 17 26 chr1 80725721 80725952 -201467712 - L1M4 LINE L1 -4138 2246 2018 456 262 14 55 chr1 80727454 80727599 -201466065 - MIR SINE MIR -66 196 58 1811 163 7 17 chr1 80728138 80728439 -201465225 + AluJb SINE Alu 1 298 -14 215 289 66 26 chr1 80729296 80729372 -201464292 + L2 LINE L2 2732 2810 -504 34 42 0 0 chr1 80729642 80729690 -201463974 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 80729839 80729861 -201463803 + AT_rich Low_complexity Low_complexity 1 22 0 1038 78 7 7 chr1 80730031 80730184 -201463480 - L1PA12 LINE L1 0 6168 6016 448 298 112 25 chr1 80730802 80731087 -201462577 - MLT1L LTR MaLR -10 605 296 2101 199 47 45 chr1 80731131 80731639 -201462025 + LTR53 LTR ERVL 4 512 -7 445 267 143 42 chr1 80731652 80731869 -201461795 - MLT1L LTR MaLR -338 277 39 263 331 114 18 chr1 80732074 80732240 -201461424 - MIR SINE MIR -72 190 9 1892 186 49 40 chr1 80732882 80733311 -201460353 + MLT1D LTR MaLR 1 433 -72 393 267 42 120 chr1 80733338 80733495 -201460169 + MIR SINE MIR 20 157 -105 2298 161 30 7 chr1 80733495 80733900 -201459764 - MLT2D LTR ERVL 0 414 1 393 267 42 120 chr1 80733900 80733959 -201459705 + MIR SINE MIR 157 219 -43 281 364 51 23 chr1 80734020 80734196 -201459468 + MIR SINE MIR 20 200 -62 386 310 111 23 chr1 80734696 80734867 -201458797 + MIR SINE MIR 13 198 -64 361 253 11 53 chr1 80735733 80735828 -201457836 - L2 LINE L2 0 3272 3182 541 294 94 43 chr1 80736386 80736662 -201457002 - L2 LINE L2 -227 3086 2770 2329 120 115 8 chr1 80736982 80737364 -201456300 - MSTA LTR MaLR 0 428 6 2363 107 0 0 chr1 80737758 80738068 -201455596 + AluSx SINE Alu 1 310 -2 371 297 138 14 chr1 80739903 80740041 -201453623 - MIR SINE MIR -88 174 20 22 35 0 0 chr1 80741122 80741151 -201452513 + AT_rich Low_complexity Low_complexity 1 29 0 206 195 49 0 chr1 80742644 80742685 -201450979 + L2 LINE L2 3222 3264 -8 328 268 221 26 chr1 80743227 80743417 -201450247 - MIR SINE MIR 0 262 36 336 264 174 0 chr1 80743570 80743691 -201449973 + L2 LINE L2 3162 3303 -10 33 25 0 0 chr1 80743951 80743991 -201449673 + AT_rich Low_complexity Low_complexity 1 40 0 4294 179 46 40 chr1 80743993 80744622 -201449042 + L1MB2 LINE L1 4671 5295 -876 1528 191 19 0 chr1 80744622 80744884 -201448780 + AluJo SINE Alu 11 277 -35 4294 179 46 40 chr1 80744884 80745748 -201447916 + L1MB2 LINE L1 5295 6171 0 2494 301 114 17 chr1 80746640 80747781 -201445883 - L2 LINE L2 -798 2516 1265 310 275 25 33 chr1 80747900 80748020 -201445644 + L2 LINE L2 3191 3309 -4 2034 120 27 0 chr1 80748883 80749183 -201444481 + AluSx SINE Alu 3 310 -2 385 66 33 0 chr1 80749183 80749244 -201444420 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 1927 212 72 5 chr1 80749308 80749831 -201443833 - L1ME1 LINE L1 -25 6141 5641 21 36 0 0 chr1 80749844 80749872 -201443792 + AT_rich Low_complexity Low_complexity 1 28 0 547 39 26 0 chr1 80751220 80751298 -201442366 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 450 195 49 0 chr1 80751298 80751380 -201442284 - MER2 DNA MER2_type -2 343 258 980 170 11 16 chr1 80751733 80751921 -201441743 - L1PA7 LINE L1 -2 6152 5966 6227 57 10 1 chr1 80752404 80753488 -201440176 - L1PA7 LINE L1 -116 6038 4949 729 259 50 58 chr1 80753603 80753931 -201439733 + MLT1J2 LTR MaLR 1 323 -86 2418 69 0 7 chr1 80753931 80754237 -201439427 - AluY SINE Alu -7 304 1 729 259 50 58 chr1 80754237 80754287 -201439377 + MLT1J2 LTR MaLR 323 372 -37 266 350 10 10 chr1 80755222 80755416 -201438248 - L1MC4a LINE L1 -1894 5914 5721 290 333 20 0 chr1 80756336 80756438 -201437226 - MIR3 SINE MIR -28 180 77 23 54 0 0 chr1 80758809 80758846 -201434818 + AT_rich Low_complexity Low_complexity 1 37 0 194 218 406 0 chr1 80758863 80758964 -201434700 - MIR SINE MIR -12 250 109 208 224 190 0 chr1 80759135 80759193 -201434471 - MIR SINE MIR -147 115 47 369 73 0 18 chr1 80759307 80759362 -201434302 - MLT2A2 LTR ERVL 0 453 400 238 221 0 23 chr1 80759370 80759456 -201434208 + (TTAA)n Simple_repeat Simple_repeat 2 85 0 2091 223 50 66 chr1 80759611 80760704 -201432960 - L1M4c LINE L1 -4662 2163 907 248 286 163 31 chr1 80760714 80760812 -201432852 + L2 LINE L2 3147 3257 -15 228 280 67 87 chr1 80762869 80763019 -201430645 + L2 LINE L2 2916 3062 -251 867 268 26 4 chr1 80763487 80763715 -201429949 - MIR SINE MIR -10 252 20 1864 50 0 0 chr1 80763718 80763939 -201429725 + AluY SINE Alu 80 300 -11 299 252 95 58 chr1 80764109 80764297 -201429367 + MLT1J LTR MaLR 214 318 -193 864 281 94 38 chr1 80764636 80765112 -201428552 - LTR33 LTR ERVL 0 521 19 211 194 78 4 chr1 80765261 80765325 -201428339 + MIR SINE MIR 58 124 -103 * 217 337 195 0 chr1 80765309 80765478 -201428186 + L2 LINE L2 629 830 -2484 897 192 59 69 chr1 80765527 80765975 -201427689 + MLT1D LTR MaLR 1 496 -9 186 314 89 24 chr1 80766303 80766427 -201427237 + L2 LINE L2 1294 1425 -1889 223 359 0 48 chr1 80767146 80767249 -201426415 - MER5A DNA MER1_type -28 161 64 232 384 162 5 chr1 80767291 80767476 -201426188 + MIR SINE MIR 49 262 0 1834 167 53 51 chr1 80767665 80768096 -201425568 + L1MA9 LINE L1 5872 6303 -9 183 357 40 16 chr1 80768424 80768550 -201425114 - L2 LINE L2 -847 2467 2339 245 171 0 0 chr1 80768704 80768745 -201424919 + MLT1K LTR MaLR 533 573 -15 337 327 75 66 chr1 80769079 80769626 -201424038 + L2 LINE L2 2694 3237 -35 243 0 0 0 chr1 80769640 80769667 -201423997 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 197 328 69 9 chr1 80771955 80772071 -201421593 - MIR SINE MIR -16 246 124 307 197 16 0 chr1 80822389 80822450 -201371214 - L1ME LINE L1 -596 5566 5505 337 233 100 87 chr1 80822503 80822653 -201371011 - L1ME4a LINE L1 -183 6356 6205 442 152 13 0 chr1 80822804 80822883 -201370781 + MADE1 DNA Mariner 1 80 0 2654 240 60 29 chr1 80822951 80823909 -201369755 - L1ME4a LINE L1 -1648 4916 3929 808 246 50 11 chr1 80823901 80824208 -201369456 - L1MEc LINE L1 -4088 2521 2195 * 692 161 5 0 chr1 80824208 80824349 -201369315 - L1M3 LINE L1 -492 5691 5546 802 154 7 0 chr1 80824499 80824648 -201369016 - L1M1 LINE L1 -5503 2062 1913 4297 131 11 24 chr1 80824648 80825368 -201368296 + MER50 LTR ERV1 1 711 -23 9113 175 26 12 chr1 80825373 80827053 -201366611 - L1M1 LINE L1 -5653 1912 210 3113 241 29 81 chr1 80827214 80828473 -201365191 - L1MEc LINE L1 -4851 1194 1 1382 137 14 63 chr1 80828733 80829018 -201364646 - LTR1B LTR ERV1 -555 271 1 231 235 0 0 chr1 80829602 80829653 -201364011 + (TA)n Simple_repeat Simple_repeat 2 52 0 265 287 20 0 chr1 80829671 80829772 -201363892 + MER110 LTR ERV1 367 469 -22 357 258 49 83 chr1 80829960 80830151 -201363513 - MIR SINE MIR -71 137 4 286 119 0 0 chr1 80831489 80831531 -201362133 - MLT2B1 LTR ERVL 0 520 479 369 0 0 0 chr1 80831531 80831572 -201362092 + (CA)n Simple_repeat Simple_repeat 2 42 0 198 118 0 0 chr1 80831576 80831610 -201362054 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1544 229 76 20 chr1 80831658 80832108 -201361556 - MLT2B1 LTR ERVL -40 480 6 1424 144 35 51 chr1 80832108 80832272 -201361392 - ERVL-B1 LTR ERVL -5 5759 5599 2180 113 3 0 chr1 80832272 80832581 -201361083 - AluSq SINE Alu 0 310 1 1424 144 35 51 chr1 80832581 80832727 -201360937 - ERVL-B1 LTR ERVL -165 5599 5452 1715 149 69 36 chr1 80832728 80833091 -201360573 + THE1C LTR MaLR 1 375 0 351 44 0 0 chr1 80833094 80833139 -201360525 + (CA)n Simple_repeat Simple_repeat 2 46 0 1651 185 7 79 chr1 80833177 80833593 -201360071 - MLT1B LTR MaLR -4 386 1 1000 258 27 23 chr1 80833673 80833929 -201359735 + MIR SINE MIR 2 258 -4 22 35 0 0 chr1 80834394 80834423 -201359241 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 80834613 80834641 -201359023 + AT_rich Low_complexity Low_complexity 1 28 0 410 145 0 0 chr1 80834743 80834805 -201358859 - MIR SINE MIR -108 154 93 207 0 0 0 chr1 80835567 80835590 -201358074 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 255 179 0 36 chr1 80835671 80835727 -201357937 + CT-rich Low_complexity Low_complexity 3 56 0 302 331 30 0 chr1 80836689 80836822 -201356842 + LTR16A1 LTR ERVL 319 455 -2 201 121 0 0 chr1 80837131 80837164 -201356500 + (TTCTCC)n Simple_repeat Simple_repeat 3 35 0 299 306 70 26 chr1 80837165 80837341 -201356323 - MIR3 SINE MIR -44 218 38 778 293 82 49 chr1 80839317 80839450 -201354214 - L2 LINE L2 -2 3311 3184 1941 133 80 14 chr1 80839450 80839802 -201353862 - THE1C LTR MaLR 0 375 1 778 293 82 49 chr1 80839802 80840284 -201353380 - L2 LINE L2 -129 3184 2670 653 181 21 28 chr1 80840502 80840646 -201353018 + AluJo SINE Alu 1 143 -169 1046 188 54 0 chr1 80840764 80840988 -201352676 - L1 LINE L1 -1137 5191 4956 4088 79 35 8 chr1 80840988 80841994 -201351670 + MER11A LTR ERVK 1 1266 0 7575 190 67 7 chr1 80841994 80843882 -201349782 - L1 LINE L1 -1367 4961 2960 333 82 0 0 chr1 80844020 80844069 -201349595 + (CA)n Simple_repeat Simple_repeat 2 50 0 315 252 48 54 chr1 80844069 80844218 -201349446 - LTR33A LTR ERVL -362 183 38 188 125 54 18 chr1 80845595 80845651 -201348013 + GA-rich Low_complexity Low_complexity 3 60 0 1751 135 40 43 chr1 80846146 80846449 -201347215 - AluSx SINE Alu -10 302 1 263 324 76 29 chr1 80846489 80846594 -201347070 + L2 LINE L2 3149 3258 -14 802 188 50 19 chr1 80846717 80846978 -201346686 - L1 LINE L1 -3982 2346 2078 16150 65 11 2 chr1 80847009 80849283 -201344381 - L1P LINE L1 -2658 3488 1196 1784 172 14 0 chr1 80849481 80849771 -201343893 - AluJo SINE Alu -18 294 1 900 268 95 19 chr1 80850961 80851286 -201342378 - MLT1I LTR MaLR -42 367 18 271 337 79 17 chr1 80851791 80851969 -201341695 - MER5A DNA MER1_type 0 189 1 225 289 185 7 chr1 80852546 80852681 -201340983 - MIR SINE MIR 0 262 104 383 322 37 29 chr1 80852688 80852930 -201340734 + MER34 LTR ERV1 21 264 -278 2334 68 3 40 chr1 80853217 80853538 -201340126 + AluY SINE Alu 1 309 -2 214 344 16 0 chr1 80853582 80853643 -201340021 - MIR SINE MIR -151 111 50 6671 195 30 18 chr1 80855506 80855770 -201337894 - L1 LINE L1 -4065 1263 1004 270 0 0 0 chr1 80855770 80855800 -201337864 + (TG)n Simple_repeat Simple_repeat 2 31 0 6671 195 30 18 chr1 80855800 80857553 -201336111 - L1 LINE L1 -4324 1004 2 245 322 57 52 chr1 80857934 80858145 -201335519 - MIR SINE MIR -34 228 17 1331 278 114 48 chr1 80859034 80859726 -201333938 + MER69 DNA AcHobo 4 741 -485 1082 250 165 8 chr1 80859896 80860289 -201333375 + L1M3e LINE L1 1 1564 -5466 757 211 18 9 chr1 80860393 80860611 -201333053 - L1 LINE L1 -2616 3530 3311 1368 176 68 52 chr1 80860611 80860980 -201332684 + THE1C LTR MaLR 1 375 0 9236 139 28 42 chr1 80860983 80862583 -201331081 + THE1C-int LTR MaLR 4 1580 0 316 224 56 29 chr1 80862583 80862707 -201330957 + THE1C LTR MaLR 1 120 -245 6601 124 57 17 chr1 80862828 80863942 -201329722 - THE1C-int LTR MaLR -422 1158 1 2644 114 14 0 chr1 80863943 80864312 -201329352 - THE1C LTR MaLR -1 374 1 245 175 35 0 chr1 80864312 80864369 -201329295 + L2 LINE L2 3107 3165 -148 4076 156 103 0 chr1 80864432 80865181 -201328483 - LTR1B LTR ERV1 0 826 1 488 214 84 9 chr1 80865432 80865647 -201328017 - Charlie2 DNA MER1_type -493 2369 2139 2595 19 0 0 chr1 80865647 80865969 -201327695 - L1PA5 LINE L1 -3307 2839 2518 21009 34 0 0 chr1 80865969 80869287 -201324377 + L1PA5 LINE L1 2826 6149 -5 1211 214 70 45 chr1 80870427 80870801 -201322863 - MLT1B LTR MaLR -6 384 2 618 342 45 7 chr1 80871007 80871317 -201322347 + LTR16A LTR ERVL 5 326 -124 3173 144 33 95 chr1 80871672 80872338 -201321326 - L1MA9 LINE L1 0 6312 5701 3445 99 8 6 chr1 80872338 80872842 -201320822 - L1PB2 LINE L1 0 6151 5647 3173 144 33 95 chr1 80872842 80872961 -201320703 - L1MA9 LINE L1 -611 5701 5576 425 258 143 16 chr1 80873050 80873232 -201320432 - L1MC4 LINE L1 -461 7581 7377 752 42 0 0 chr1 80873747 80873843 -201319821 + L1PA3 LINE L1 3 98 -6048 * 35728 31 24 1 chr1 80873837 80879245 -201314419 + L1PA3 LINE L1 617 6151 -4 440 287 32 45 chr1 80879448 80879605 -201314059 + MIR SINE MIR 33 187 -75 274 265 140 15 chr1 80880456 80880592 -201313072 - L2 LINE L2 -13 3300 3148 303 354 79 11 chr1 80881175 80881353 -201312311 - MIR SINE MIR -50 212 23 1665 214 78 14 chr1 80881578 80881999 -201311665 + MLT2B1 LTR ERVL 2 449 -71 267 339 119 0 chr1 80882074 80882192 -201311472 + L2 LINE L2 3163 3294 -19 287 343 82 15 chr1 80882214 80882348 -201311316 - MIR SINE MIR -92 170 28 271 345 36 36 chr1 80882478 80882588 -201311076 + MIR SINE MIR 29 138 -124 2109 103 0 0 chr1 80882850 80883123 -201310541 - AluSx SINE Alu -39 273 1 295 269 65 19 chr1 80883128 80883236 -201310428 - MLT1C LTR MaLR -339 210 98 302 240 40 20 chr1 80883320 80883420 -201310244 + MIR SINE MIR 158 259 -3 203 327 64 36 chr1 80883730 80883840 -201309824 - MIR SINE MIR -63 145 33 205 204 0 45 chr1 80884144 80884188 -201309476 + L3b LINE CR1 1289 1330 -253 326 292 118 21 chr1 80884568 80884712 -201308952 - L2 LINE L2 -223 3049 2892 252 364 50 16 chr1 80885251 80885372 -201308292 - L2 LINE L2 0 3313 3189 1095 266 129 20 chr1 80886458 80886901 -201306763 + LTR16C LTR ERVL 1 491 0 23 0 0 0 chr1 80888239 80888262 -201305402 + AT_rich Low_complexity Low_complexity 1 23 0 236 77 26 0 chr1 80888629 80888668 -201304996 + (GA)n Simple_repeat Simple_repeat 2 41 0 251 71 24 0 chr1 80889045 80889087 -201304577 + (CA)n Simple_repeat Simple_repeat 2 44 0 2383 92 0 3 chr1 80890864 80891168 -201302496 - AluSq SINE Alu -10 303 1 269 337 92 0 chr1 80891828 80891926 -201301738 + MIR3 SINE MIR 77 183 -25 248 224 0 66 chr1 80893268 80893344 -201300320 + MIR SINE MIR 37 107 -155 595 150 87 0 chr1 80893366 80893493 -201300171 - L1MB1 LINE L1 -6 6162 6025 11187 139 44 12 chr1 80893494 80895168 -201298496 + Tigger1 DNA MER2_type 2 1748 -670 2360 108 0 0 chr1 80895168 80895465 -201298199 + AluSx SINE Alu 3 299 -13 11187 139 44 12 chr1 80895465 80895735 -201297929 + Tigger1 DNA MER2_type 1748 2008 -410 405 202 12 0 chr1 80895725 80895809 -201297855 - Tigger1 DNA MER2_type -2331 87 3 * 371 368 7 0 chr1 80898322 80898458 -201295206 - L2 LINE L2 0 3272 3136 198 304 40 48 chr1 80898682 80898807 -201294857 + L2 LINE L2 3172 3295 -18 275 232 18 0 chr1 80899118 80899174 -201294490 - MLT1K LTR MaLR 0 588 532 484 214 17 17 chr1 80899350 80899467 -201294197 - MLT1C LTR MaLR -345 122 6 1592 298 137 19 chr1 80899996 80900618 -201293046 - L2 LINE L2 0 3313 2766 2575 46 3 7 chr1 80900618 80900924 -201292740 + AluY SINE Alu 1 305 -6 1592 298 137 19 chr1 80900924 80901139 -201292525 - L2 LINE L2 -547 2766 2578 7141 50 16 11 chr1 80901139 80902393 -201291271 + L1PA5 LINE L1 4896 6154 0 1592 298 137 19 chr1 80902393 80902607 -201291057 - L2 LINE L2 -735 2578 2124 373 278 38 0 chr1 80902609 80902742 -201290922 - MIR SINE MIR -84 178 41 182 286 0 0 chr1 80902881 80902923 -201290741 - MER5A DNA MER1_type -36 153 112 188 350 82 0 chr1 80903357 80903454 -201290210 + MER5A DNA MER1_type 60 164 -25 3480 155 2 6 chr1 80903586 80904115 -201289549 - MER1A DNA MER1_type -2 527 1 1336 172 83 13 chr1 80904152 80904454 -201289210 + MER33 DNA MER1_type 2 324 0 299 311 53 15 chr1 80904561 80904693 -201288971 + L2 LINE L2 3116 3252 -20 202 266 89 13 chr1 80904712 80904791 -201288873 - MIR SINE MIR -108 100 16 266 257 104 21 chr1 80906051 80906150 -201287514 - MER69 DNA AcHobo -560 1966 1856 2396 180 21 55 chr1 80906150 80906718 -201286946 - MER34C LTR ERV1 0 585 37 1120 219 41 51 chr1 80906739 80907131 -201286533 - MER69 DNA AcHobo -688 1838 1451 284 325 85 70 chr1 80908630 80909266 -201284398 + L2 LINE L2 477 1135 -2179 306 0 0 0 chr1 80909266 80909300 -201284364 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 284 325 85 70 chr1 80909300 80909647 -201284017 + L2 LINE L2 1135 1475 -1839 249 354 79 36 chr1 80909767 80910072 -201283592 + L2 LINE L2 2429 2746 -568 318 288 129 0 chr1 80910446 80910578 -201283086 + L2 LINE L2 3165 3313 0 2030 115 0 0 chr1 80911092 80911362 -201282302 - AluY SINE Alu -13 298 29 545 226 183 0 chr1 80911362 80911499 -201282165 - MLT1J LTR MaLR -330 181 20 280 294 183 16 chr1 80911948 80912074 -201281590 - MER5A DNA MER1_type -6 183 37 315 70 26 0 chr1 80912161 80912213 -201281451 - MLT2B3 LTR ERVL 0 554 464 1548 228 8 34 chr1 80912245 80912600 -201281064 - MER4D LTR ERV1 0 903 558 231 222 0 21 chr1 80912628 80912695 -201280969 - MER4D LTR ERV1 -592 280 107 510 202 37 0 chr1 80912803 80912912 -201280752 - MLT1J2 LTR MaLR -275 175 63 2372 155 23 3 chr1 80913029 80913417 -201280247 + MSTD LTR MaLR 1 396 0 198 176 0 0 chr1 80915185 80915219 -201278445 - L2 LINE L2 -665 2649 2616 298 242 0 0 chr1 80915657 80915723 -201277941 + MIR3 SINE MIR 110 175 -33 222 211 0 0 chr1 80916288 80916340 -201277324 + (CA)n Simple_repeat Simple_repeat 2 53 0 211 262 243 0 chr1 80917820 80917923 -201275741 + L2 LINE L2 3145 3272 0 876 178 0 20 chr1 80918263 80918409 -201275255 + AluJb SINE Alu 139 281 -31 333 0 0 0 chr1 80918410 80918447 -201275217 + (CA)n Simple_repeat Simple_repeat 2 38 0 568 269 110 57 chr1 80918520 80918784 -201274880 + MLT1K LTR MaLR 40 317 -271 693 158 62 27 chr1 80918798 80918944 -201274720 - MLT1B LTR MaLR 0 390 240 547 142 28 75 chr1 80918982 80919088 -201274576 - AluJo SINE Alu -127 185 85 1337 186 66 30 chr1 80919092 80919425 -201274239 - MLT1C LTR MaLR -122 345 1 817 171 0 0 chr1 80919722 80919845 -201273819 + FLAM_C SINE Alu 3 125 -18 1870 235 62 24 chr1 80920114 80920662 -201273002 - L1ME2 LINE L1 -1 6163 5595 754 268 211 46 chr1 80921432 80921820 -201271844 - MLT1G1 LTR MaLR 0 595 144 394 42 0 0 chr1 80922734 80922782 -201270882 + MER41A LTR ERV1 397 444 -110 2088 130 0 3 chr1 80922795 80923087 -201270577 + AluSx SINE Alu 1 291 -21 308 366 48 24 chr1 80923364 80923394 -201270270 - L3 LINE CR1 -355 1222 1194 842 144 8 0 chr1 80923394 80923519 -201270145 - FLAM_A SINE Alu -7 126 1 308 366 48 24 chr1 80923519 80923739 -201269925 - L3 LINE CR1 -383 1194 966 188 313 62 38 chr1 80923745 80923825 -201269839 - L3 LINE CR1 -931 646 565 360 270 60 94 chr1 80923941 80924208 -201269456 - LTR67 LTR ERVL -297 260 3 251 266 38 25 chr1 80924234 80924313 -201269351 - L3 LINE CR1 -1052 525 446 1919 115 28 47 chr1 80924531 80924852 -201268812 - MER7A DNA MER2_type -33 313 1 2293 110 0 0 chr1 80924921 80925213 -201268451 - AluSq SINE Alu -21 292 1 770 159 146 13 chr1 80925314 80925465 -201268199 + FRAM SINE Alu 1 168 -8 196 340 57 6 chr1 80925883 80926042 -201267622 - MIR3 SINE MIR -6 202 36 241 253 25 25 chr1 80928543 80928622 -201265042 - LTR67 LTR ERVL -10 547 469 1125 236 51 27 chr1 80928623 80928958 -201264706 - LTR16C LTR ERVL 0 491 149 1541 82 14 45 chr1 80929270 80929490 -201264174 + AluSg/x SINE Alu 89 301 -11 315 286 114 0 chr1 80929541 80929646 -201264018 + L2 LINE L2 3197 3313 0 205 342 0 0 chr1 80930197 80930273 -201263391 + (TG)n Simple_repeat Simple_repeat 2 77 0 407 303 42 19 chr1 80930693 80930878 -201262786 + MIR SINE MIR 43 239 -23 2380 89 3 0 chr1 80932231 80932535 -201261129 - AluSx SINE Alu -6 306 2 227 59 0 0 chr1 80932535 80932569 -201261095 - Alu SINE Alu -167 134 101 577 214 50 7 chr1 80932916 80933056 -201260608 - MER5B DNA MER1_type -32 146 1 1210 229 121 24 chr1 80933178 80933684 -201259980 - L1M4 LINE L1 -2511 3635 3081 667 154 0 0 chr1 80933684 80933788 -201259876 - FRAM SINE Alu 0 176 73 284 156 22 0 chr1 80935989 80936034 -201257630 - Alu SINE Alu -256 46 1 1593 101 14 9 chr1 80936208 80936426 -201257238 - AluSg/x SINE Alu -12 300 82 231 214 135 11 chr1 80936617 80936706 -201256958 + MIR SINE MIR 40 139 -69 206 213 53 40 chr1 80936707 80936782 -201256882 - MER91 DNA MER1_type 0 140 65 353 272 18 18 chr1 80937085 80937199 -201256465 - MLT1K LTR MaLR -324 264 151 398 301 30 8 chr1 80937731 80937864 -201255800 - MIR SINE MIR -108 154 19 438 270 34 89 chr1 80938322 80938629 -201255035 - L1MEd LINE L1 -1073 1417 1049 1858 117 95 0 chr1 80938629 80938903 -201254761 - AluSx SINE Alu -12 300 1 438 270 34 89 chr1 80938903 80939005 -201254659 - L1MEd LINE L1 -1441 1049 943 2068 148 0 7 chr1 80939043 80939341 -201254323 - AluJo SINE Alu -16 296 1 1739 129 11 4 chr1 80939470 80939741 -201253923 - MER34B LTR ERV1 0 565 293 230 143 0 48 chr1 80939842 80939884 -201253780 + Alu SINE Alu 117 156 -10 704 284 55 38 chr1 80939888 80940296 -201253368 + L1ME LINE L1 5192 5616 -554 241 297 62 51 chr1 80940302 80940497 -201253167 + L1ME LINE L1 5670 5866 -298 1926 173 48 94 chr1 80940502 80941004 -201252660 + L1MC4 LINE L1 6760 7238 -804 23 0 0 0 chr1 80941028 80941051 -201252613 + AT_rich Low_complexity Low_complexity 1 23 0 2178 129 0 3 chr1 80941109 80941420 -201252244 - AluSx SINE Alu -2 310 1 361 323 63 31 chr1 80941446 80941700 -201251964 - L3 LINE CR1 -1067 510 249 2175 85 29 0 chr1 80942475 80942756 -201250908 - AluSc SINE Alu -10 299 11 2490 63 7 7 chr1 80942766 80943065 -201250599 - AluSg SINE Alu -11 299 1 280 205 14 14 chr1 80943394 80943465 -201250199 - MLT1K LTR MaLR -342 246 140 21 36 0 0 chr1 80943675 80943703 -201249961 + AT_rich Low_complexity Low_complexity 1 28 0 375 278 104 26 chr1 80944044 80944274 -201249390 + MIR SINE MIR 14 261 -1 2121 92 0 11 chr1 80944605 80944886 -201248778 - AluSq SINE Alu 0 313 36 1673 167 35 3 chr1 80944895 80945177 -201248487 - AluJo SINE Alu -21 291 1 380 264 7 101 chr1 80945216 80945364 -201248300 + L2 LINE L2 3139 3272 0 403 132 0 15 chr1 80945411 80945479 -201248185 + MER5A DNA MER1_type 1 67 -122 2330 98 0 0 chr1 80945483 80945779 -201247885 - AluSg SINE Alu -14 296 1 291 274 52 89 chr1 80947522 80947657 -201246007 + MIR3 SINE MIR 30 159 -49 501 258 168 7 chr1 80949219 80949374 -201244290 + MIR SINE MIR 13 192 -70 336 289 50 8 chr1 80949943 80950064 -201243600 + MIR SINE MIR 76 201 -61 1859 122 93 31 chr1 80950296 80950649 -201243015 + THE1C LTR MaLR 1 375 0 31 44 0 0 chr1 80950999 80951044 -201242620 + AT_rich Low_complexity Low_complexity 1 45 0 552 234 144 5 chr1 80951201 80951389 -201242275 + L2 LINE L2 3095 3308 -5 340 268 77 13 chr1 80951521 80951671 -201241993 + MIR SINE MIR 41 203 -59 432 238 63 16 chr1 80951764 80951890 -201241774 + MIR3 SINE MIR 65 196 -12 226 231 19 0 chr1 80953352 80953404 -201240260 + L2 LINE L2 3204 3256 -16 555 344 37 18 chr1 80954118 80954336 -201239328 + MIR SINE MIR 20 241 -21 180 111 0 0 chr1 80954820 80954847 -201238817 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 348 297 47 23 chr1 80954847 80954969 -201238695 - L2 LINE L2 -7 3265 3141 206 248 32 32 chr1 80954969 80955094 -201238570 + (AATAG)n Simple_repeat Simple_repeat 5 129 0 2102 118 3 0 chr1 80955767 80956087 -201237577 + AluSg SINE Alu 1 321 0 479 354 39 39 chr1 80956189 80956250 -201237414 - L2 LINE L2 -433 2881 2821 916 184 0 12 chr1 80956250 80956413 -201237251 + FRAM SINE Alu 1 161 -5 479 354 39 39 chr1 80956413 80956662 -201237002 - L2 LINE L2 -492 2822 2571 456 349 77 63 chr1 80957157 80957700 -201235964 + L2 LINE L2 2671 3243 -29 504 48 0 0 chr1 80957700 80957763 -201235901 + (CA)n Simple_repeat Simple_repeat 2 64 0 456 349 77 63 chr1 80957763 80957790 -201235874 + L2 LINE L2 3243 3268 -4 549 267 0 0 chr1 80959076 80959192 -201234472 + FLAM_A SINE Alu 1 116 -17 186 103 0 0 chr1 80959193 80959222 -201234442 + (CA)n Simple_repeat Simple_repeat 2 30 0 274 213 13 53 chr1 80959617 80959692 -201233972 - L2 LINE L2 0 3313 3242 237 200 0 35 chr1 80959825 80959910 -201233754 + T-rich Low_complexity Low_complexity 3 84 0 248 282 77 0 chr1 80960161 80960239 -201233425 - MER63 DNA MER1_type 0 1062 979 325 260 13 0 chr1 80960240 80960317 -201233347 - MER63 DNA MER1_type -311 751 674 360 283 33 17 chr1 80960980 80961116 -201232548 - L1MC4a LINE L1 -1007 6801 6681 2121 90 4 4 chr1 80961364 80961642 -201232022 - AluSp SINE Alu -8 305 28 23 78 0 0 chr1 80962153 80962204 -201231460 + AT_rich Low_complexity Low_complexity 1 51 0 480 262 171 21 chr1 80963378 80963565 -201230099 + MER58C DNA MER1_type 1 215 0 479 331 95 21 chr1 80963581 80963823 -201229841 - MIR SINE MIR -1 261 2 488 263 80 52 chr1 80965400 80965613 -201228051 - LTR33 LTR ERVL -52 469 251 647 228 176 20 chr1 80965770 80966025 -201227639 - MER5C DNA MER1_type 0 324 30 350 223 85 11 chr1 80966318 80966412 -201227252 - MER103 DNA DNA -58 108 8 846 190 137 98 chr1 80967146 80967420 -201226244 - MSTC LTR MaLR -2 426 129 1354 225 3 41 chr1 80967420 80967713 -201225951 - AluJo SINE Alu -28 284 3 846 190 137 98 chr1 80967713 80967848 -201225816 - MSTC LTR MaLR -299 129 1 1497 223 106 30 chr1 80968253 80968567 -201225097 + MER63B DNA MER1_type 2 355 -707 1397 177 196 33 chr1 80968567 80968935 -201224729 + MSTC LTR MaLR 1 428 0 1497 223 106 30 chr1 80968935 80969024 -201224640 + MER63B DNA MER1_type 355 436 0 498 290 45 23 chr1 80969026 80969202 -201224462 + MIR SINE MIR 19 198 -64 1808 153 76 17 chr1 80969416 80969770 -201223894 - THE1C LTR MaLR 0 375 1 511 337 19 30 chr1 80970153 80970420 -201223244 - L2 LINE L2 -9 3304 3041 495 341 56 16 chr1 80970484 80970736 -201222928 - L2 LINE L2 -613 2701 2440 2857 173 44 39 chr1 80970760 80971400 -201222264 - LTR48B LTR ERV1 0 644 2 2074 124 141 8 chr1 80971400 80971754 -201221910 + MSTA LTR MaLR 28 428 0 1272 301 123 6 chr1 80971817 80972296 -201221368 + MER69 DNA AcHobo 55 589 -637 32 57 0 0 chr1 80972316 80972369 -201221295 + AT_rich Low_complexity Low_complexity 1 53 0 1078 219 41 51 chr1 80974007 80974399 -201219265 + MER69 DNA AcHobo 1451 1838 -688 2777 173 12 46 chr1 80974420 80974988 -201218676 + MER34C LTR ERV1 37 585 0 479 226 139 67 chr1 80974992 80975200 -201218464 + MER69 DNA AcHobo 1871 2093 -433 616 221 111 5 chr1 80975275 80975465 -201218199 + MER69 DNA AcHobo 2293 2502 -24 469 287 153 0 chr1 80975661 80975811 -201217853 + MIR SINE MIR 17 189 -73 300 286 26 0 chr1 80976783 80976860 -201216804 - L2 LINE L2 -10 3262 3184 182 351 88 0 chr1 80977684 80977798 -201215866 + L3 LINE CR1 402 525 -1052 226 303 139 65 chr1 80978020 80978436 -201215228 + L2 LINE L2 1894 2340 -974 295 77 0 0 chr1 80978586 80978625 -201215039 - MLT1J LTR MaLR -2 622 584 1304 108 16 5 chr1 80978628 80978814 -201214850 + MSTA LTR MaLR 241 428 0 345 247 47 35 chr1 80978814 80978899 -201214765 - MLT1J LTR MaLR -141 452 367 516 308 14 0 chr1 80978920 80979063 -201214601 - MER20B DNA MER1_type -498 285 141 317 259 7 109 chr1 80979258 80979405 -201214259 - L2 LINE L2 0 3313 3182 609 143 0 0 chr1 80979653 80979758 -201213906 - L1MA5A LINE L1 -2 6295 6191 26 0 0 0 chr1 80981597 80981623 -201212041 + AT_rich Low_complexity Low_complexity 1 26 0 209 283 33 17 chr1 80981794 80981854 -201211810 - MIR SINE MIR -192 70 10 352 354 7 62 chr1 80981862 80982006 -201211658 + L2 LINE L2 3097 3232 -40 277 76 76 0 chr1 80982915 80982981 -201210683 + (TA)n Simple_repeat Simple_repeat 1 71 0 302 320 0 39 chr1 80982981 80983109 -201210555 + L1MC4 LINE L1 6583 6705 -1337 21 0 0 0 chr1 80983109 80983130 -201210534 + AT_rich Low_complexity Low_complexity 1 21 0 298 42 42 0 chr1 80983132 80983180 -201210484 + (TA)n Simple_repeat Simple_repeat 1 50 0 321 121 0 35 chr1 80983809 80983867 -201209797 - MLT2B1 LTR ERVL -3 517 462 3581 143 33 7 chr1 80983874 80984484 -201209180 - Tigger1 DNA MER2_type -5 2413 1788 272 259 112 9 chr1 80984599 80984715 -201208949 - MLT1J LTR MaLR 0 511 384 446 281 85 96 chr1 80984794 80985054 -201208610 - MLT1J LTR MaLR -237 274 18 221 250 0 0 chr1 80988008 80988056 -201205608 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 251 239 211 9 chr1 80988480 80988589 -201205075 + MIR SINE MIR 121 251 -11 2119 109 13 0 chr1 80988812 80989123 -201204541 - L1PA12 LINE L1 -1 6167 5853 1157 329 60 33 chr1 80989578 80990402 -201203262 - L2 LINE L2 0 3313 2458 200 336 164 0 chr1 80990450 80990566 -201203098 + L2 LINE L2 3175 3309 -4 410 314 73 52 chr1 80990915 80991300 -201202364 - MLT1K LTR MaLR -2 586 194 329 237 35 9 chr1 80991453 80991567 -201202097 + (TA)n Simple_repeat Simple_repeat 1 117 0 221 292 92 0 chr1 80991609 80991674 -201201990 + L2 LINE L2 3241 3311 -2 496 273 84 13 chr1 80993281 80993435 -201200229 + MIR SINE MIR 48 212 -50 472 285 174 3 chr1 80993507 80993695 -201199969 - LTR33A LTR ERVL -56 467 312 2103 209 151 56 chr1 80993695 80994449 -201199215 - LTR1B LTR ERV1 0 826 1 472 285 174 3 chr1 80994449 80994565 -201199099 - LTR33A LTR ERVL -211 312 111 2238 92 3 16 chr1 80996298 80996612 -201197052 - AluY SINE Alu 0 311 2 189 0 0 0 chr1 80996621 80996642 -201197022 + (T)n Simple_repeat Simple_repeat 1 21 0 273 98 0 0 chr1 80997291 80997332 -201196332 + (GA)n Simple_repeat Simple_repeat 2 42 0 397 359 53 50 chr1 80997870 80998188 -201195476 + L2 LINE L2 2824 3142 -171 1440 195 31 0 chr1 80998238 80998525 -201195139 - MLT1B LTR MaLR -6 384 89 323 345 36 67 chr1 80998638 80998832 -201194832 - HAL1 LINE L1 -2319 188 1 2604 11 0 0 chr1 80998932 80999214 -201194450 - AluYb8 SINE Alu 0 318 37 2535 118 3 11 chr1 80999458 80999831 -201193833 + THE1C LTR MaLR 1 370 -5 189 412 74 7 chr1 80999888 81000036 -201193628 + L2 LINE L2 2890 3047 -225 1807 139 32 0 chr1 81000164 81000444 -201193220 - AluSx SINE Alu -18 294 6 22 0 0 0 chr1 81000735 81000757 -201192907 + AT_rich Low_complexity Low_complexity 1 22 0 316 371 24 34 chr1 81001494 81001699 -201191965 - MIR3 SINE MIR -4 204 2 193 244 22 0 chr1 81001866 81001911 -201191753 - L2 LINE L2 0 3272 3227 22 0 0 0 chr1 81003247 81003269 -201190395 + AT_rich Low_complexity Low_complexity 1 22 0 231 259 207 15 chr1 81003410 81003545 -201190119 - MIR SINE MIR -50 212 52 28 0 0 0 chr1 81004092 81004120 -201189544 + AT_rich Low_complexity Low_complexity 1 28 0 327 252 0 58 chr1 81004404 81004506 -201189158 + HsTC2 DNA Tc2 3 98 -1800 468 240 20 0 chr1 81004506 81004606 -201189058 + MER99 DNA DNA 2 103 -725 43 56 0 11 chr1 81004821 81004876 -201188788 + AT_rich Low_complexity Low_complexity 1 56 -32 2523 55 0 0 chr1 81004876 81005186 -201188478 - AluY SINE Alu -1 310 1 43 56 0 11 chr1 81005186 81005219 -201188445 + AT_rich Low_complexity Low_complexity 56 88 0 28 0 0 0 chr1 81005401 81005429 -201188235 + AT_rich Low_complexity Low_complexity 1 28 0 1779 169 21 0 chr1 81005583 81005920 -201187744 + MER99 DNA DNA 192 535 -293 425 223 155 20 chr1 81005914 81006062 -201187602 + MER99 DNA DNA 660 827 -1 * 5723 109 9 8 chr1 81006141 81007674 -201185990 - L1PA15 LINE L1 0 6165 4658 1764 235 77 29 chr1 81007677 81008261 -201185403 + HsTC2 DNA Tc2 1284 1895 -3 198 200 67 0 chr1 81008261 81008306 -201185358 - MIR SINE MIR -124 138 91 232 263 53 0 chr1 81008407 81008483 -201185181 - L1ME LINE L1 -336 5828 5749 805 289 80 48 chr1 81008508 81008944 -201184720 - MLT1J2 LTR MaLR 0 450 1 21 0 0 0 chr1 81009114 81009135 -201184529 + AT_rich Low_complexity Low_complexity 1 21 0 1077 276 104 25 chr1 81009142 81010132 -201183532 - L1P5 LINE L1 -671 5485 4415 407 242 23 68 chr1 81010268 81010400 -201183264 + L2 LINE L2 3180 3305 -8 188 98 0 49 chr1 81010470 81010511 -201183153 + (TTTTTA)n Simple_repeat Simple_repeat 1 39 0 304 300 21 7 chr1 81010712 81010852 -201182812 + T-rich Low_complexity Low_complexity 2 143 0 248 340 108 34 chr1 81010998 81011351 -201182313 - L1MC/D LINE L1 -1921 5887 5509 1961 138 0 32 chr1 81011410 81011721 -201181943 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr1 81011973 81011995 -201181669 + AT_rich Low_complexity Low_complexity 1 22 0 2737 182 140 11 chr1 81012035 81012684 -201180980 + L1MB4 LINE L1 5447 6179 -1 24 32 0 0 chr1 81012715 81012746 -201180918 + AT_rich Low_complexity Low_complexity 1 31 0 2274 115 27 30 chr1 81012985 81013350 -201180314 + THE1B LTR MaLR 1 364 0 11742 88 6 8 chr1 81013350 81014934 -201178730 + THE1B-int LTR MaLR 1 1580 0 2179 128 22 33 chr1 81014935 81015302 -201178362 + THE1B LTR MaLR 2 364 0 1269 202 54 22 chr1 81015989 81016211 -201177453 - MER58B DNA MER1_type -2080 340 104 854 209 65 101 chr1 81016211 81016581 -201177083 + MSTA LTR MaLR 1 354 -74 1985 136 3 0 chr1 81016581 81016868 -201176796 + AluSx SINE Alu 8 295 -17 854 209 65 101 chr1 81016868 81016941 -201176723 + MSTA LTR MaLR 354 428 0 1269 202 54 22 chr1 81016941 81017035 -201176629 - MER58B DNA MER1_type -2316 104 14 280 281 33 13 chr1 81018103 81018256 -201175408 + GA-rich Low_complexity Low_complexity 3 158 0 413 299 49 7 chr1 81018529 81018625 -201175039 + MER117 DNA MER1_type 1 106 -91 960 279 74 28 chr1 81018625 81019055 -201174609 + LTR16A LTR ERVL 1 450 0 413 299 49 7 chr1 81019055 81019102 -201174562 + MER117 DNA MER1_type 106 150 -47 247 264 0 0 chr1 81023097 81023150 -201170514 - L2 LINE L2 -1 3271 3219 988 247 109 38 chr1 81023752 81024052 -201169612 + MSTD LTR MaLR 3 335 -61 1720 168 13 19 chr1 81024052 81024362 -201169302 + AluJb SINE Alu 1 308 -4 988 247 109 38 chr1 81024362 81024429 -201169235 + MSTD LTR MaLR 335 396 0 229 244 0 0 chr1 81024698 81024743 -201168921 + CT-rich Low_complexity Low_complexity 4 48 0 865 254 82 4 chr1 81024863 81025095 -201168569 + MIR SINE MIR 3 252 -10 192 380 0 14 chr1 81025227 81025298 -201168366 + L2 LINE L2 3232 3301 -12 198 103 0 0 chr1 81025299 81025328 -201168336 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 182 379 48 0 chr1 81025837 81025982 -201167682 + MER5B DNA MER1_type 26 177 -1 209 229 188 62 chr1 81026980 81027076 -201166588 + L2 LINE L2 3206 3313 0 2005 117 163 5 chr1 81027142 81027510 -201166154 - MSTA LTR MaLR 0 428 3 2033 92 52 0 chr1 81028580 81028851 -201164813 - AluSx SINE Alu 0 312 28 301 317 109 10 chr1 81029538 81029639 -201164025 + L2 LINE L2 3124 3234 -38 29 78 0 0 chr1 81029652 81029716 -201163948 + AT_rich Low_complexity Low_complexity 1 64 0 850 291 76 41 chr1 81030060 81030404 -201163260 - MLT1J LTR MaLR 0 511 156 1218 276 89 39 chr1 81031302 81032209 -201161455 - L1ME3A LINE L1 -223 6445 5473 1010 268 75 65 chr1 81032209 81032866 -201160798 - MLT2F LTR ERVL 0 663 1 1218 276 89 39 chr1 81032866 81033010 -201160654 - L1ME3A LINE L1 -1195 5473 5338 398 310 185 0 chr1 81033444 81033757 -201159907 - L1ME3A LINE L1 -1593 5051 4681 31 88 0 0 chr1 81033778 81033858 -201159806 + AT_rich Low_complexity Low_complexity 1 80 0 1946 124 0 51 chr1 81034009 81034323 -201159341 - AluSq SINE Alu -15 298 1 203 125 25 0 chr1 81035494 81035534 -201158130 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 945 260 128 31 chr1 81035896 81035995 -201157669 - L1ME3A LINE L1 -4578 2247 2159 459 0 0 0 chr1 81035995 81036046 -201157618 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr1 81036045 81036067 -201157597 + (TTAGG)n Simple_repeat Simple_repeat 4 25 0 * 945 260 128 31 chr1 81036046 81036475 -201157189 - L1ME3A LINE L1 -4666 2159 1691 806 265 53 30 chr1 81036444 81036874 -201156790 - L1ME3A LINE L1 -5070 1472 1033 * 2084 124 0 37 chr1 81036918 81037241 -201156423 - AluSx SINE Alu 0 312 2 1034 97 0 0 chr1 81037244 81037378 -201156286 - AluSq/x SINE Alu -178 134 1 312 315 130 43 chr1 81037378 81037562 -201156102 - L1ME3A LINE L1 -5514 1120 921 315 281 108 22 chr1 81037613 81037752 -201155912 - L1ME3A LINE L1 -5604 1030 880 22 0 0 0 chr1 81038431 81038453 -201155211 + AT_rich Low_complexity Low_complexity 1 22 0 211 185 0 93 chr1 81038464 81038518 -201155146 + L2 LINE L2 3262 3310 -3 3543 110 6 4 chr1 81038606 81039116 -201154548 - MER9 LTR ERVK 0 511 1 1889 259 26 55 chr1 81039253 81039859 -201153805 + MLT1E LTR MaLR 5 593 0 1601 231 6 29 chr1 81039867 81040214 -201153450 - MLT1F1 LTR MaLR -224 343 5 4478 206 51 5 chr1 81040222 81042044 -201151620 + L1MC1 LINE L1 4265 6148 -185 612 119 10 10 chr1 81042065 81042166 -201151498 + L1MC1 LINE L1 6094 6194 -139 876 181 35 0 chr1 81042779 81042978 -201150686 + L1MA7 LINE L1 6081 6286 -5 309 191 0 0 chr1 81043079 81043147 -201150517 - L1M4 LINE L1 -1602 4544 4477 3421 182 6 2 chr1 81043153 81044294 -201149370 - L1PB1 LINE L1 -3 7567 6370 * 9623 205 8 20 chr1 81044292 81045997 -201147667 + L1 LINE L1 2768 4442 -1704 6504 67 2 16 chr1 81045997 81046495 -201147169 + L1PA7 LINE L1 5281 5765 -389 2094 106 7 30 chr1 81046495 81046796 -201146868 + AluSc SINE Alu 1 294 -15 6504 67 2 16 chr1 81046796 81047177 -201146487 + L1PA7 LINE L1 5765 6150 -4 9623 205 8 20 chr1 81047177 81047698 -201145966 + L1 LINE L1 4442 4968 -1178 711 297 73 23 chr1 81048034 81048431 -201145233 - MLT1F1-int LTR MaLR -770 601 185 270 171 13 53 chr1 81048452 81048528 -201145136 - MLT1F1 LTR MaLR -1 566 494 25 102 0 0 chr1 81049593 81049681 -201143983 + AT_rich Low_complexity Low_complexity 1 88 0 585 150 0 20 chr1 81050087 81050187 -201143477 - L1PA7 LINE L1 -16 6138 6041 24 103 0 0 chr1 81050241 81050328 -201143336 + AT_rich Low_complexity Low_complexity 1 87 0 706 310 31 25 chr1 81050559 81050917 -201142747 - L1ME3 LINE L1 -246 5916 5557 34 0 0 0 chr1 81050950 81050984 -201142680 + AT_rich Low_complexity Low_complexity 1 34 0 1868 129 10 13 chr1 81051016 81051325 -201142339 - L1MA2 LINE L1 -5 6299 5992 6510 202 15 3 chr1 81051326 81052730 -201140934 - L1PB1 LINE L1 -2207 5358 3938 3360 100 67 105 chr1 81052732 81052968 -201140696 - L1PB1 LINE L1 -3898 3667 3423 2163 84 0 14 chr1 81052968 81053310 -201140354 - AluY SINE Alu 0 338 1 3360 100 67 105 chr1 81053310 81053597 -201140067 - L1PB1 LINE L1 -4142 3423 3180 1982 128 0 50 chr1 81053597 81053917 -201139747 - AluSg SINE Alu -6 304 1 3360 100 67 105 chr1 81053917 81054170 -201139494 - L1PB1 LINE L1 -4385 3180 2919 1829 181 14 30 chr1 81054274 81054645 -201139019 - MLT1A1 LTR MaLR 0 365 1 2734 231 101 96 chr1 81054645 81055669 -201137995 - MLT1A1-int LTR MaLR 0 1735 707 3599 227 75 16 chr1 81055669 81056691 -201136973 - HERVL74-A2 LTR ERVL -140 3416 2105 2923 241 17 23 chr1 81056736 81057563 -201136101 - HERVL74-A2 LTR ERVL -1389 2167 1334 2014 238 27 23 chr1 81057561 81058074 -201135590 - HERVL74-A2 LTR ERVL -2968 588 74 * 287 329 67 31 chr1 81058129 81058354 -201135310 - L1MEd LINE L1 -5443 676 444 180 143 0 0 chr1 81058766 81058808 -201134856 + (TTTTTA)n Simple_repeat Simple_repeat 4 45 0 4336 157 9 3 chr1 81059409 81060104 -201133560 - MER50 LTR ERV1 -24 710 12 2493 105 28 18 chr1 81060104 81060494 -201133170 - MER50-int LTR ERV1 -1 7204 6811 * 12418 204 53 43 chr1 81060467 81063755 -201129909 - MER50-int LTR ERV1 -1000 6205 2885 6286 151 28 25 chr1 81063751 81064313 -201129351 - MER50-int LTR ERV1 -5355 1850 1291 * 2035 128 7 3 chr1 81064313 81064617 -201129047 - AluY SINE Alu -6 305 1 6286 151 28 25 chr1 81064617 81065789 -201127875 - MER50-int LTR ERV1 -5914 1291 31 3973 164 36 3 chr1 81065794 81066485 -201127179 - MER50 LTR ERV1 -12 722 9 495 232 115 75 chr1 81066509 81066697 -201126967 + MLT1H1 LTR MaLR 225 404 -222 3343 179 48 29 chr1 81066697 81067411 -201126253 + LTR8A LTR ERV1 1 727 0 495 232 115 75 chr1 81067411 81067599 -201126065 + MLT1H1 LTR MaLR 404 619 -7 1971 176 57 36 chr1 81068114 81068627 -201125037 - MLT2A2 LTR ERVL 0 554 8 930 182 29 29 chr1 81068997 81069206 -201124458 - MER61E LTR ERV1 -44 525 317 2379 74 0 0 chr1 81069224 81069534 -201124130 + L1PA6 LINE L1 5844 6153 -1 372 273 193 11 chr1 81069552 81069816 -201123848 - L1MC4 LINE L1 -31 8011 7700 209 179 0 18 chr1 81069821 81069877 -201123787 + (CA)n Simple_repeat Simple_repeat 1 55 0 2180 136 0 0 chr1 81070895 81071205 -201122459 - AluY SINE Alu -1 310 1 1666 116 39 90 chr1 81071583 81071893 -201121771 - AluSx SINE Alu -17 295 2 317 339 45 77 chr1 81072518 81072831 -201120833 + L2 LINE L2 2970 3272 0 24 67 0 0 chr1 81073391 81073436 -201120228 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr1 81073691 81073723 -201119941 + AT_rich Low_complexity Low_complexity 1 32 0 414 239 56 64 chr1 81075119 81075192 -201118472 - L1MC5 LINE L1 -81 7880 7808 1406 118 96 18 chr1 81075192 81075464 -201118200 - L1MA4 LINE L1 -6 6294 6002 414 239 56 64 chr1 81075464 81075540 -201118124 - L1MC5 LINE L1 -153 7808 7733 1708 168 26 57 chr1 81075540 81075927 -201117737 + THE1C LTR MaLR 1 375 0 414 239 56 64 chr1 81075927 81076010 -201117654 - L1MC5 LINE L1 -228 7733 7649 784 260 88 95 chr1 81076054 81076228 -201117436 - L1MC4 LINE L1 -28 8014 7840 6031 95 15 14 chr1 81076228 81077542 -201116122 + L1PA13 LINE L1 4847 6162 -1 784 260 88 95 chr1 81077542 81078148 -201115516 - L1MC4 LINE L1 -202 7840 7239 2526 145 14 42 chr1 81078282 81078778 -201114886 - L1MA4A LINE L1 -8 6295 5814 5755 152 30 18 chr1 81078781 81080421 -201113243 - L1PA16 LINE L1 -1 6165 4510 252 0 0 0 chr1 81080573 81080601 -201113063 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 369 333 7 21 chr1 81080980 81081121 -201112543 - L1PA13 LINE L1 -5276 1511 1373 732 344 51 52 chr1 81081162 81081652 -201112012 - L1PA13 LINE L1 -6200 587 97 186 118 0 0 chr1 81081652 81081686 -201111978 + (TTG)n Simple_repeat Simple_repeat 2 35 0 732 344 51 52 chr1 81081686 81081767 -201111897 - L1PA13 LINE L1 -6690 97 17 2230 90 0 26 chr1 81081808 81082118 -201111546 - AluSc SINE Alu -1 308 7 2735 133 11 2 chr1 81082123 81082559 -201111105 - L1MA4A LINE L1 -471 6534 6095 3498 120 6 6 chr1 81082559 81083093 -201110571 - L1PA15 LINE L1 -3 6162 5629 6124 161 31 24 chr1 81083098 81084348 -201109316 - L1MA4A LINE L1 -4165 2684 1426 21 36 0 0 chr1 81084458 81084486 -201109178 + AT_rich Low_complexity Low_complexity 1 28 0 275 390 82 15 chr1 81084933 81085202 -201108462 - L3 LINE CR1 -100 1477 1191 816 248 41 69 chr1 81085263 81085581 -201108083 - MER102b DNA MER1_type -32 309 1 749 246 65 84 chr1 81087799 81088120 -201105544 + MER5C DNA MER1_type 10 324 0 361 253 253 35 chr1 81088312 81088510 -201105154 + MIR SINE MIR 7 247 -15 357 24 0 0 chr1 81089463 81089505 -201104159 + (TG)n Simple_repeat Simple_repeat 1 42 0 189 0 0 0 chr1 81090226 81090247 -201103417 + (T)n Simple_repeat Simple_repeat 1 21 0 4139 148 39 22 chr1 81090654 81091460 -201102204 - L1MC1 LINE L1 -6 6327 5509 222 261 0 0 chr1 81092917 81092963 -201100701 + polypyrimidine Low_complexity Low_complexity 4 49 0 1111 148 5 5 chr1 81093020 81093209 -201100455 - MLT1D LTR MaLR 0 505 317 538 299 102 5 chr1 81093991 81094178 -201099486 + MIR SINE MIR 2 206 -56 2719 23 3 3 chr1 81094530 81094839 -201098825 - AluY SINE Alu -2 309 1 23 0 0 0 chr1 81094840 81094863 -201098801 + AT_rich Low_complexity Low_complexity 1 23 0 514 241 9 0 chr1 81096708 81096820 -201096844 + MER94 DNA DNA 1 113 -21 1191 245 48 18 chr1 81096833 81097164 -201096500 + MER58B DNA MER1_type 1 341 0 4305 108 13 11 chr1 81099244 81099855 -201093809 - LTR9 LTR ERV1 0 612 1 333 275 39 82 chr1 81100180 81100362 -201093302 + MLT1J2 LTR MaLR 1 174 -276 807 277 83 32 chr1 81101068 81101187 -201092477 + MLT1J1 LTR MaLR 1 113 -333 1981 142 124 18 chr1 81101187 81101574 -201092090 + MSTA LTR MaLR 1 428 0 807 277 83 32 chr1 81101574 81101829 -201091835 + MLT1J1 LTR MaLR 113 394 -52 1674 180 44 46 chr1 81102099 81102215 -201091449 + MLT1A1 LTR MaLR 1 116 -249 3449 58 5 16 chr1 81102215 81102648 -201091016 + SVA Other Other 958 1385 -1 1674 180 44 46 chr1 81102648 81102897 -201090767 + MLT1A1 LTR MaLR 116 365 0 2335 95 3 0 chr1 81103368 81103664 -201090000 - AluY SINE Alu -14 297 1 2999 309 62 25 chr1 81103707 81104578 -201089086 - L2 LINE L2 -2 3311 2361 2315 173 21 9 chr1 81104578 81104999 -201088665 - MSTB LTR MaLR 0 426 1 2999 309 62 25 chr1 81104999 81105600 -201088064 - L2 LINE L2 -952 2361 1784 2165 116 0 0 chr1 81105934 81106228 -201087436 + AluSg SINE Alu 1 294 -16 206 238 32 16 chr1 81106228 81106281 -201087383 + L2 LINE L2 3257 3313 0 30 0 0 0 chr1 81106405 81106435 -201087229 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chr1 81106744 81106788 -201086876 + AT_rich Low_complexity Low_complexity 1 44 0 203 169 51 0 chr1 81106899 81106958 -201086706 + (TTAA)n Simple_repeat Simple_repeat 1 62 0 23 54 0 0 chr1 81107236 81107273 -201086391 + AT_rich Low_complexity Low_complexity 1 37 0 15605 172 22 14 chr1 81107446 81109121 -201084543 + L1M1 LINE L1 1035 2696 -5028 185 0 0 39 chr1 81109121 81109147 -201084517 + (CAAAA)n Simple_repeat Simple_repeat 4 28 0 15605 172 22 14 chr1 81109147 81110577 -201083087 + L1M1 LINE L1 2696 4114 -3610 1987 139 0 35 chr1 81110577 81110893 -201082771 - AluSq SINE Alu -8 305 1 15605 172 22 14 chr1 81110893 81112205 -201081459 + L1M1 LINE L1 4114 5415 -2309 2610 36 0 7 chr1 81112205 81112508 -201081156 + AluY SINE Alu 1 301 -10 15605 172 22 14 chr1 81112508 81114066 -201079598 + L1M1 LINE L1 5415 7060 -664 1886 142 23 43 chr1 81114068 81114420 -201079244 + THE1B LTR MaLR 1 345 -19 225 0 0 0 chr1 81114420 81114445 -201079219 + (A)n Simple_repeat Simple_repeat 1 25 0 6855 109 18 0 chr1 81114457 81115425 -201078239 + THE1B-int LTR MaLR 1 985 -595 835 313 60 45 chr1 81115448 81115712 -201077952 - MER34 LTR ERV1 -7 535 277 2111 148 20 93 chr1 81115712 81116165 -201077499 + MSTB LTR MaLR 3 422 -4 8163 187 20 26 chr1 81116174 81117829 -201075835 + MSTB-int LTR MaLR 5 1650 -1 2121 163 20 71 chr1 81117830 81118279 -201075385 + MSTB LTR MaLR 1 426 0 835 313 60 45 chr1 81118279 81118514 -201075150 - MER34 LTR ERV1 -271 271 16 183 156 0 62 chr1 81119399 81119463 -201074201 + T-rich Low_complexity Low_complexity 5 64 0 201 156 0 0 chr1 81119627 81119659 -201074005 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 2108 139 73 14 chr1 81119819 81120163 -201073501 + THE1B LTR MaLR 1 364 0 10743 100 34 10 chr1 81120163 81120586 -201073078 + THE1B-int LTR MaLR 1 413 -1167 1977 159 0 0 chr1 81120586 81120895 -201072769 - AluSx SINE Alu 0 309 1 10743 100 34 10 chr1 81120895 81122014 -201071650 + THE1B-int LTR MaLR 413 1580 0 2043 139 72 17 chr1 81122014 81122359 -201071305 + THE1B LTR MaLR 1 364 0 2116 110 14 0 chr1 81124021 81124312 -201069352 + AluSx SINE Alu 3 297 -15 1213 214 83 50 chr1 81124326 81124724 -201068940 + LTR37A LTR ERV1 1 411 -15 215 243 14 0 chr1 81125245 81125315 -201068349 + (TA)n Simple_repeat Simple_repeat 2 72 0 268 349 9 0 chr1 81125413 81125519 -201068145 + MIR SINE MIR 60 166 -96 29 0 0 0 chr1 81127415 81127444 -201066220 + AT_rich Low_complexity Low_complexity 1 29 0 392 138 0 12 chr1 81127780 81127860 -201065804 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 202 194 0 0 chr1 81127877 81127913 -201065751 + CT-rich Low_complexity Low_complexity 2 37 0 538 298 65 40 chr1 81130920 81131168 -201062496 + MIR SINE MIR 9 262 0 28 48 0 0 chr1 81132497 81132539 -201061125 + AT_rich Low_complexity Low_complexity 1 42 0 320 350 108 38 chr1 81132890 81133047 -201060617 + L2 LINE L2 3103 3270 -2 369 222 74 0 chr1 81133164 81133245 -201060419 - L2 LINE L2 0 3313 3227 263 339 77 15 chr1 81133629 81133759 -201059905 - L2 LINE L2 -15 3298 3161 187 396 0 0 chr1 81134338 81134391 -201059273 + L2 LINE L2 3203 3255 -17 367 220 232 30 chr1 81134811 81134979 -201058685 - L2 LINE L2 -470 2844 2643 2116 117 0 3 chr1 81134989 81135279 -201058385 + AluSx SINE Alu 4 292 -20 194 330 143 28 chr1 81135378 81135639 -201058025 + L2 LINE L2 2767 3050 -222 205 203 0 101 chr1 81135985 81136064 -201057600 + A-rich Low_complexity Low_complexity 1 71 0 603 356 43 0 chr1 81136276 81136506 -201057158 + MIR SINE MIR 3 242 -20 301 250 239 0 chr1 81136536 81136628 -201057036 - L2 LINE L2 0 3313 3200 213 132 0 0 chr1 81139170 81139208 -201054456 + (TG)n Simple_repeat Simple_repeat 2 39 0 366 317 109 55 chr1 81140168 81140351 -201053313 - MIR3 SINE MIR -11 197 5 233 315 81 0 chr1 81140927 81141038 -201052626 + MIR SINE MIR 103 222 -40 34 0 0 0 chr1 81141560 81141594 -201052070 + AT_rich Low_complexity Low_complexity 1 34 0 1340 87 0 0 chr1 81141594 81141767 -201051897 - AluY SINE Alu -24 287 115 219 224 75 30 chr1 81142095 81142162 -201051502 + L2 LINE L2 3229 3298 -15 420 327 82 18 chr1 81142295 81142515 -201051149 + LTR16C LTR ERVL 258 491 0 181 282 84 14 chr1 81142556 81142627 -201051037 + L2 LINE L2 3178 3253 -19 272 372 83 8 chr1 81143645 81143766 -201049898 - L2 LINE L2 -2 3270 3141 1379 192 3 64 chr1 81146373 81146686 -201046978 + AluJb SINE Alu 1 294 -8 1842 233 68 38 chr1 81147692 81148298 -201045366 + MLT1E3 LTR MaLR 1 624 0 184 196 109 0 chr1 81150923 81150969 -201042695 + L2 LINE L2 3263 3313 0 264 130 0 0 chr1 81151260 81151306 -201042358 + (CA)n Simple_repeat Simple_repeat 2 47 0 53 0 0 0 chr1 81151896 81151949 -201041715 + AT_rich Low_complexity Low_complexity 1 53 0 316 260 338 7 chr1 81151949 81152103 -201041561 - MIR SINE MIR -56 206 2 211 250 36 0 chr1 81153197 81153253 -201040411 - L2 LINE L2 -6 3307 3250 1106 16 0 0 chr1 81153972 81154097 -201039567 - AluY SINE Alu -9 302 178 1785 32 55 0 chr1 81154097 81154315 -201039349 - AluY SINE Alu -81 230 1 279 236 0 0 chr1 81154776 81154848 -201038816 + (TTCA)n Simple_repeat Simple_repeat 2 73 0 1066 257 99 60 chr1 81154848 81155540 -201038124 - L2 LINE L2 0 3313 2593 285 151 0 0 chr1 81155583 81155636 -201038028 - L1MA9 LINE L1 -38 6274 6222 277 49 0 49 chr1 81155639 81155680 -201037984 + MSTD LTR MaLR 1 39 -389 284 264 91 9 chr1 81155686 81155796 -201037868 + MER34 LTR ERV1 1 119 -423 * 2025 203 60 21 chr1 81155785 81156253 -201037411 + LTR29 LTR ERV1 137 622 0 762 244 105 26 chr1 81156253 81156543 -201037121 + MSTD LTR MaLR 45 396 0 337 193 0 0 chr1 81156546 81156603 -201037061 - L1MA9 LINE L1 -89 6223 6167 2168 103 53 9 chr1 81156712 81157052 -201036612 - THE1A LTR MaLR 0 355 1 14522 155 41 19 chr1 81157305 81158078 -201035586 + Tigger2 DNA MER2_type 1 755 -1963 2333 43 4 0 chr1 81158078 81158393 -201035271 + AluY SINE Alu 1 316 0 14522 155 41 19 chr1 81158393 81160274 -201033390 + Tigger2 DNA MER2_type 755 2715 -3 27 62 0 0 chr1 81160401 81160449 -201033215 + AT_rich Low_complexity Low_complexity 1 48 0 1198 169 31 19 chr1 81160452 81160712 -201032952 + L1MB8 LINE L1 5911 6173 -5 180 0 0 0 chr1 81161816 81161836 -201031828 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1780 189 0 0 chr1 81162623 81162929 -201030735 - AluJb SINE Alu -5 307 2 23 0 0 0 chr1 81163141 81163164 -201030500 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 81163261 81163289 -201030375 + AT_rich Low_complexity Low_complexity 1 28 0 488 270 158 7 chr1 81163876 81164028 -201029636 + MER5A DNA MER1_type 14 188 -1 509 312 44 10 chr1 81164546 81164751 -201028913 + MLT1H LTR MaLR 1 212 -337 252 311 58 19 chr1 81164780 81164883 -201028781 - L2 LINE L2 -472 2842 2736 225 0 0 0 chr1 81165494 81165519 -201028145 + (T)n Simple_repeat Simple_repeat 1 25 0 2062 113 3 0 chr1 81165600 81165923 -201027741 + AluSx SINE Alu 1 324 0 231 159 0 0 chr1 81166457 81166501 -201027163 - L1MA4 LINE L1 -4 6296 6253 488 167 27 241 chr1 81167565 81167864 -201025800 - MER58 DNA MER1_type -2153 267 33 422 262 19 0 chr1 81167868 81168024 -201025640 + MER58B DNA MER1_type 202 341 0 558 196 28 70 chr1 81168160 81168303 -201025361 - L2 LINE L2 -12 3301 3165 22 0 0 0 chr1 81168566 81168588 -201025076 + AT_rich Low_complexity Low_complexity 1 22 0 1054 216 49 20 chr1 81169973 81170322 -201023342 - L1ME3A LINE L1 -26 6144 5748 1027 139 206 56 chr1 81170323 81170575 -201023089 + MER1B DNA MER1_type 46 335 -4 361 367 104 27 chr1 81170797 81171094 -201022570 + L2 LINE L2 2953 3272 0 2098 122 0 0 chr1 81171583 81171879 -201021785 + AluSx SINE Alu 1 296 -16 340 352 50 12 chr1 81172924 81173094 -201020570 - MIR SINE MIR -57 205 31 26 30 0 0 chr1 81173178 81173211 -201020453 + AT_rich Low_complexity Low_complexity 1 33 0 2202 108 0 0 chr1 81173259 81173555 -201020109 - AluSg SINE Alu -14 296 1 240 237 37 89 chr1 81173744 81173791 -201019873 + L1ME4a LINE L1 5993 6041 -80 2099 125 3 10 chr1 81173791 81174103 -201019561 + AluSx SINE Alu 1 310 -2 240 237 37 89 chr1 81174103 81174190 -201019474 + L1ME4a LINE L1 6041 6120 -1 2225 84 0 7 chr1 81174600 81174885 -201018779 - AluSq SINE Alu -13 300 18 335 322 109 35 chr1 81177914 81178088 -201015576 + MIR SINE MIR 20 206 -56 241 294 163 25 chr1 81178141 81178301 -201015363 + MLT1K LTR MaLR 67 248 -340 242 250 0 0 chr1 81178463 81178507 -201015157 + MER20 DNA MER1_type 176 219 0 204 67 0 0 chr1 81178582 81178612 -201015052 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 200 377 0 0 chr1 81178642 81178711 -201014953 - MIR SINE MIR -102 106 38 2084 108 3 3 chr1 81178711 81178999 -201014665 + AluSc SINE Alu 1 288 -21 201 94 0 0 chr1 81179521 81179553 -201014111 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 629 233 0 0 chr1 81179554 81179674 -201013990 - FLAM_C SINE Alu -23 120 1 286 288 0 0 chr1 81180179 81180245 -201013419 - MER81 DNA DNA -7 107 42 272 342 43 0 chr1 81180716 81180833 -201012831 - L2 LINE L2 -1 3312 3191 273 298 46 53 chr1 81180897 81180960 -201012704 - MIR SINE MIR -55 207 145 2439 62 13 3 chr1 81180960 81181268 -201012396 - AluY SINE Alu 0 311 1 273 298 46 53 chr1 81181268 81181335 -201012329 - MIR SINE MIR -117 145 78 186 242 0 97 chr1 81181707 81181769 -201011895 + L2 LINE L2 3210 3265 -7 286 339 55 0 chr1 81181858 81181967 -201011697 + L2 LINE L2 3199 3313 0 188 0 74 0 chr1 81182305 81182332 -201011332 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 204 359 106 45 chr1 81183029 81183405 -201010259 + L2 LINE L2 2915 3313 0 361 233 227 60 chr1 81183591 81183741 -201009923 + MER96 DNA MER1_type? 1 175 0 354 311 68 25 chr1 81183742 81183903 -201009761 + MIR SINE MIR 92 259 -3 234 290 200 40 chr1 81185101 81185301 -201008363 - MIR SINE MIR -27 235 4 495 246 22 91 chr1 81186273 81186549 -201007115 - L2 LINE L2 0 3313 3057 592 282 120 34 chr1 81186590 81186856 -201006808 + MLT1I LTR MaLR 47 335 -74 453 198 63 54 chr1 81188488 81188599 -201005065 - L2 LINE L2 -14 3299 3188 217 408 172 0 chr1 81189016 81189173 -201004491 - L2 LINE L2 -554 2760 2577 408 333 93 13 chr1 81189256 81189481 -201004183 + MIR SINE MIR 12 254 -8 835 277 94 60 chr1 81189583 81190063 -201003601 - L2 LINE L2 0 3313 2818 24 53 0 0 chr1 81191316 81191354 -201002310 + AT_rich Low_complexity Low_complexity 1 38 0 192 284 43 86 chr1 81192363 81192479 -201001185 - L3 LINE CR1 -985 592 482 205 250 0 19 chr1 81193440 81193492 -201000172 + MER5B DNA MER1_type 25 75 -103 193 250 197 0 chr1 81193895 81193971 -200999693 - MER5B DNA MER1_type -87 91 1 1010 223 124 41 chr1 81194366 81194642 -200999022 + MER110A LTR ERV1 23 346 -122 1689 143 43 0 chr1 81194642 81194938 -200998726 + AluSx SINE Alu 13 319 0 1010 223 124 41 chr1 81194938 81195072 -200998592 + MER110A LTR ERV1 346 468 0 198 340 94 79 chr1 81195644 81195909 -200997755 - L3 LINE CR1 -1129 448 180 26 50 0 0 chr1 81196097 81196137 -200997527 + AT_rich Low_complexity Low_complexity 1 40 0 608 277 62 63 chr1 81196304 81196717 -200996947 + L1MEd LINE L1 1166 1662 -914 329 286 131 24 chr1 81197329 81197497 -200996167 + L1MEd LINE L1 1611 1796 -4600 252 0 0 0 chr1 81197548 81197576 -200996088 + (TG)n Simple_repeat Simple_repeat 1 28 0 1921 137 16 25 chr1 81197657 81197784 -200995880 + AluSx SINE Alu 1 128 -184 387 0 0 0 chr1 81197784 81197827 -200995837 + (CA)n Simple_repeat Simple_repeat 2 44 0 1921 137 16 25 chr1 81197827 81198013 -200995651 + AluSx SINE Alu 128 311 -1 22 0 0 0 chr1 81199385 81199407 -200994257 + AT_rich Low_complexity Low_complexity 1 22 0 1726 239 48 68 chr1 81199662 81200223 -200993441 + MER77 LTR ERV1 52 601 -4 346 257 59 0 chr1 81202160 81202261 -200991403 + MLT1K LTR MaLR 438 544 -44 773 271 10 0 chr1 81203412 81203604 -200990060 - MIR SINE MIR 0 262 69 490 249 124 53 chr1 81203649 81203874 -200989790 + L2 LINE L2 3073 3313 0 312 315 47 20 chr1 81204041 81204190 -200989474 - MIR SINE MIR -36 226 74 229 340 180 7 chr1 81204281 81204431 -200989233 - MIR SINE MIR -21 241 66 883 288 102 35 chr1 81206067 81206729 -200986935 - L2 LINE L2 -3 3310 2591 381 267 38 0 chr1 81206857 81206962 -200986702 + MER117 DNA MER1_type 7 115 -82 282 210 62 37 chr1 81208028 81208109 -200985555 - MIR3 SINE MIR -49 159 77 6073 146 22 22 chr1 81208537 81209646 -200984018 - L1MC1 LINE L1 -5 6328 5219 235 241 17 0 chr1 81210012 81210070 -200983594 + MIR SINE MIR 192 250 -12 231 374 11 0 chr1 81211265 81211356 -200982308 + LTR67 LTR ERVL 99 190 -367 380 294 141 35 chr1 81212133 81212303 -200981361 + MIR SINE MIR 4 191 -71 195 292 32 124 chr1 81212743 81212928 -200980736 - MIR SINE MIR -80 182 15 198 103 0 0 chr1 81212932 81212961 -200980703 + (T)n Simple_repeat Simple_repeat 1 29 0 760 235 159 62 chr1 81213803 81214242 -200979422 + MLT1L LTR MaLR 134 615 0 1713 188 58 0 chr1 81214317 81214642 -200979022 - MER2 DNA MER2_type 0 344 1 1364 253 49 6 chr1 81215110 81215458 -200978206 + MLT1A1 LTR MaLR 1 363 -2 333 382 60 27 chr1 81216163 81216498 -200977166 + L2 LINE L2 2329 2674 -640 342 363 112 38 chr1 81216545 81216964 -200976700 - L3 LINE CR1 -62 1515 1066 1559 243 57 74 chr1 81217329 81217969 -200975695 + MER77 LTR ERV1 55 725 -9 305 170 0 0 chr1 81218095 81218142 -200975522 - MER8 DNA MER2_type -2 237 191 * 2168 165 5 44 chr1 81218132 81218463 -200975201 + Tigger2 DNA MER2_type 2328 2642 -76 2157 129 7 0 chr1 81218463 81218773 -200974891 + AluSx SINE Alu 1 312 0 2168 165 5 44 chr1 81218773 81218848 -200974816 + Tigger2 DNA MER2_type 2642 2718 0 318 224 37 67 chr1 81222653 81222787 -200970877 - L1MCa LINE L1 -4318 2108 1979 282 289 66 50 chr1 81222789 81222910 -200970754 - L2 LINE L2 -17 3296 3174 328 292 50 8 chr1 81222912 81223032 -200970632 - MER117 DNA MER1_type -72 125 1 1300 213 91 9 chr1 81223932 81224251 -200969413 + MER2 DNA MER2_type 1 345 0 220 389 66 18 chr1 81224737 81224904 -200968760 + MIR3 SINE MIR 30 204 -4 487 360 5 0 chr1 81226380 81226580 -200967084 + HERVI LTR ERV1 778 978 -6807 2058 321 51 51 chr1 81226801 81228544 -200965120 + HERVI LTR ERV1 954 3094 -4691 2404 69 20 0 chr1 81228544 81228847 -200964817 - AluY SINE Alu -2 309 1 2058 321 51 51 chr1 81228847 81229864 -200963800 + HERVI LTR ERV1 3094 4109 -3676 234 0 0 0 chr1 81230061 81230087 -200963577 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 1013 340 32 30 chr1 81230087 81230907 -200962757 + HERVI LTR ERV1 3214 4034 -2615 1098 347 8 23 chr1 81230907 81231572 -200962092 + HERVI LTR ERV1 5102 5756 -2029 327 322 8 0 chr1 81231791 81231912 -200961752 + HERVI LTR ERV1 3031 3152 -3744 1737 314 34 36 chr1 81232325 81233503 -200960161 + HERVI LTR ERV1 5339 7647 -138 306 268 32 32 chr1 81234494 81234651 -200959013 + MER103 DNA DNA 3 159 -7 23 0 0 0 chr1 81235549 81235572 -200958092 + AT_rich Low_complexity Low_complexity 1 23 0 2048 132 0 0 chr1 81235851 81236146 -200957518 - AluSg1 SINE Alu -14 295 1 322 245 75 0 chr1 81236870 81236964 -200956700 - MIR SINE MIR -82 180 80 43061 30 21 3 chr1 81236965 81243009 -200950655 + L1HS LINE L1 2 6155 0 374 257 69 35 chr1 81243402 81243546 -200950118 + MIR SINE MIR 101 249 -13 247 276 0 40 chr1 81244566 81244642 -200949022 - MIR3 SINE MIR -3 205 133 258 32 0 0 chr1 81245997 81246028 -200947636 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 283 0 0 chr1 81246617 81246663 -200947001 + MIR SINE MIR 91 136 -126 369 0 0 0 chr1 81247582 81247623 -200946041 + (TG)n Simple_repeat Simple_repeat 1 41 0 2071 206 32 30 chr1 81247876 81248380 -200945284 + MLT1D LTR MaLR 1 505 0 195 174 87 0 chr1 81248407 81248453 -200945211 - L2 LINE L2 0 3313 3264 302 344 92 9 chr1 81249774 81250001 -200943663 + L2 LINE L2 2395 2640 -674 325 360 119 39 chr1 81250094 81250530 -200943134 + L2 LINE L2 2784 3258 -14 1120 147 11 5 chr1 81250745 81250929 -200942735 + AluSg/x SINE Alu 118 302 -10 247 272 29 37 chr1 81251260 81251396 -200942268 - L1ME LINE L1 -230 5891 5757 4202 36 4 4 chr1 81251826 81252346 -200941318 - L1PA4 LINE L1 -3 6152 5633 1673 27 9 5 chr1 81252334 81252553 -200941111 + L1P LINE L1 5184 5403 -743 29872 23 0 0 chr1 81252567 81256895 -200936769 + L1HS LINE L1 1827 6154 -1 395 250 69 35 chr1 81257286 81257430 -200936234 + MIR SINE MIR 101 249 -13 251 276 0 40 chr1 81258450 81258526 -200935138 - MIR3 SINE MIR -3 205 133 258 32 0 0 chr1 81259882 81259913 -200933751 + (CA)n Simple_repeat Simple_repeat 2 32 0 202 283 0 0 chr1 81260502 81260548 -200933116 + MIR SINE MIR 91 136 -126 351 0 0 0 chr1 81261467 81261506 -200932158 + (TG)n Simple_repeat Simple_repeat 1 39 0 2067 206 32 30 chr1 81261759 81262263 -200931401 + MLT1D LTR MaLR 1 505 0 195 174 87 0 chr1 81262290 81262336 -200931328 - L2 LINE L2 0 3313 3264 297 344 92 9 chr1 81263657 81263884 -200929780 + L2 LINE L2 2395 2640 -674 336 390 106 37 chr1 81264031 81264410 -200929254 + L2 LINE L2 2854 3258 -14 649 23 23 0 chr1 81264510 81264597 -200929067 + (TCCA)n Simple_repeat Simple_repeat 4 92 0 205 250 36 36 chr1 81265553 81265609 -200928055 + L2 LINE L2 3211 3266 -6 195 42 0 0 chr1 81268032 81268056 -200925608 + (TG)n Simple_repeat Simple_repeat 2 25 0 514 248 7 67 chr1 81268090 81268239 -200925425 - MIR SINE MIR -27 235 96 260 242 15 0 chr1 81270625 81270691 -200922973 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 351 298 9 18 chr1 81271851 81271965 -200921699 - L2 LINE L2 -2 3311 3199 37 23 0 0 chr1 81272020 81272064 -200921600 + AT_rich Low_complexity Low_complexity 1 44 0 23 86 0 0 chr1 81272137 81272195 -200921469 + AT_rich Low_complexity Low_complexity 1 58 0 302 343 81 17 chr1 81272921 81273093 -200920571 + MIR SINE MIR 6 188 -74 1701 203 125 4 chr1 81273375 81273766 -200919898 + MSTB1 LTR MaLR 1 432 0 808 264 17 13 chr1 81274237 81274468 -200919196 - MIR SINE MIR -15 247 22 214 286 171 48 chr1 81275974 81276079 -200917585 + MIR SINE MIR 16 133 -75 507 306 174 5 chr1 81276164 81276383 -200917281 + MIR SINE MIR 4 259 -3 22 56 0 0 chr1 81277012 81277048 -200916616 + AT_rich Low_complexity Low_complexity 1 36 0 2220 155 56 17 chr1 81277866 81278278 -200915386 - MSTA LTR MaLR 0 428 1 190 277 77 15 chr1 81278278 81278343 -200915321 + MIR SINE MIR 37 105 -103 283 262 98 66 chr1 81279084 81279267 -200914397 - L2 LINE L2 -24 3289 3101 395 294 37 18 chr1 81279623 81279786 -200913878 - MIR3 SINE MIR -12 196 31 224 304 33 0 chr1 81280072 81280164 -200913500 + (TATATG)n Simple_repeat Simple_repeat 6 100 0 536 288 79 0 chr1 81280180 81280319 -200913345 + L2 LINE L2 3163 3312 -1 525 274 52 67 chr1 81281455 81281770 -200911894 + MIR SINE MIR 40 262 0 203 312 165 0 chr1 81283006 81283115 -200910549 + MIR3 SINE MIR 74 200 -8 250 324 102 19 chr1 81283449 81283557 -200910107 - L2 LINE L2 0 3272 3156 23 0 0 0 chr1 81283563 81283586 -200910078 + AT_rich Low_complexity Low_complexity 1 23 0 782 283 9 22 chr1 81283669 81283895 -200909769 - MIR SINE MIR -22 240 18 1193 258 135 42 chr1 81284890 81285386 -200908278 + MLT1F LTR MaLR 1 542 0 270 320 0 0 chr1 81286247 81286322 -200907342 - MIR SINE MIR -8 254 180 312 315 165 39 chr1 81286325 81286658 -200907006 - MLT1I LTR MaLR -2 407 33 350 319 22 37 chr1 81286705 81286840 -200906824 - MIR SINE MIR -121 141 9 286 320 0 20 chr1 81286955 81287055 -200906609 + L2 LINE L2 3166 3263 -9 226 371 28 19 chr1 81288601 81288712 -200904952 + MIR SINE MIR 2 119 -89 526 278 40 12 chr1 81288744 81288917 -200904747 - MER117 DNA MER1_type -16 181 4 1112 222 34 62 chr1 81289122 81289442 -200904222 + MER31B LTR ERV1 1 311 -155 24 0 0 0 chr1 81289451 81289475 -200904189 + AT_rich Low_complexity Low_complexity 1 24 0 352 179 54 24 chr1 81289646 81289814 -200903850 + (TA)n Simple_repeat Simple_repeat 1 173 0 356 248 37 28 chr1 81289838 81289947 -200903717 + MER67A LTR ERV1 431 540 -3 294 29 0 0 chr1 81293770 81293805 -200899859 + (CA)n Simple_repeat Simple_repeat 2 36 0 3963 200 103 147 chr1 81294724 81295314 -200898350 - L1MD3 LINE L1 -10 7985 7371 381 260 39 8 chr1 81295314 81295441 -200898223 - MLT1F1 LTR MaLR -436 131 1 3963 200 103 147 chr1 81295441 81296147 -200897517 - L1MD3 LINE L1 -624 7371 6608 274 61 0 20 chr1 81296147 81296196 -200897468 + LTR66 LTR ERVL 390 437 -173 3963 200 103 147 chr1 81296196 81296757 -200896907 - L1MD3 LINE L1 -1387 6608 6024 224 240 0 0 chr1 81297112 81297162 -200896502 + MER5A DNA MER1_type 1 50 -139 288 0 0 0 chr1 81297219 81297251 -200896413 + (ATG)n Simple_repeat Simple_repeat 2 33 0 264 294 112 53 chr1 81297306 81297476 -200896188 - MIR3 SINE MIR -32 176 2 258 32 0 0 chr1 81297569 81297600 -200896064 + (TA)n Simple_repeat Simple_repeat 2 32 0 187 339 0 0 chr1 81297645 81297701 -200895963 - MIR SINE MIR -72 136 81 413 307 40 12 chr1 81298054 81298225 -200895439 + MIR SINE MIR 39 218 -44 683 256 110 26 chr1 81299874 81300147 -200893517 - MLT1I LTR MaLR -17 392 97 380 216 194 30 chr1 81301226 81301360 -200892304 + MER5A DNA MER1_type 34 189 0 233 347 16 40 chr1 81301448 81301572 -200892092 - MIR SINE MIR -136 126 6 201 274 113 75 chr1 81301995 81302101 -200891563 - MIR SINE MIR -151 111 2 1271 226 7 15 chr1 81303093 81303363 -200890301 + MLT1C LTR MaLR 200 467 0 225 234 0 0 chr1 81303475 81303522 -200890142 - MIR SINE MIR -108 154 108 247 208 103 13 chr1 81303670 81303747 -200889917 - MIR SINE MIR -112 96 17 515 156 33 0 chr1 81303747 81303837 -200889827 - MER58B DNA MER1_type 0 341 249 1782 169 88 3 chr1 81303875 81304206 -200889458 - MLT1A1 LTR MaLR -6 359 1 1318 209 66 46 chr1 81304841 81305190 -200888474 + MLT1A1 LTR MaLR 10 365 0 205 191 0 73 chr1 81305720 81305788 -200887876 + A-rich Low_complexity Low_complexity 4 66 0 258 242 17 8 chr1 81305789 81305909 -200887755 + (TA)n Simple_repeat Simple_repeat 2 122 0 453 116 0 0 chr1 81305938 81306007 -200887657 + (TG)n Simple_repeat Simple_repeat 2 70 0 2148 115 3 3 chr1 81306058 81306354 -200887310 - AluSc SINE Alu -13 296 1 22 35 0 0 chr1 81306721 81306750 -200886914 + AT_rich Low_complexity Low_complexity 1 29 0 187 346 39 0 chr1 81307114 81307192 -200886472 + MIR SINE MIR 52 132 -76 21 36 0 0 chr1 81307314 81307342 -200886322 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1 81307783 81307807 -200885857 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1858 149 17 10 chr1 81308647 81308948 -200884716 + AluJb SINE Alu 2 304 -8 1400 216 86 79 chr1 81311079 81311552 -200882112 + LTR40b LTR ERVL 1 461 -1 197 293 43 103 chr1 81311598 81311714 -200881950 + MIR SINE MIR 40 148 -60 2430 84 0 0 chr1 81312640 81312951 -200880713 + AluY SINE Alu 1 311 0 1085 283 84 37 chr1 81313722 81314210 -200879454 + MLT1J LTR MaLR 1 511 0 4096 23 0 0 chr1 81317134 81317609 -200876055 + L1PA3 LINE L1 5681 6155 0 363 318 30 15 chr1 81317846 81317978 -200875686 - MIR SINE MIR -48 214 81 3089 215 39 33 chr1 81318026 81318837 -200874827 - MER63C DNA MER1_type -131 929 111 1708 190 0 13 chr1 81318837 81319142 -200874522 - AluJb SINE Alu -11 301 1 3089 215 39 33 chr1 81319142 81319178 -200874486 - MER63C DNA MER1_type -949 111 77 297 0 0 0 chr1 81320260 81320293 -200873371 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 305 326 0 0 chr1 81322407 81322496 -200871168 - MIR3 SINE MIR -3 205 117 207 0 0 0 chr1 81322827 81322850 -200870814 + (T)n Simple_repeat Simple_repeat 1 23 0 400 296 52 7 chr1 81323083 81323218 -200870446 - MIR SINE MIR -6 256 116 310 353 105 23 chr1 81323294 81323427 -200870237 + MIR3 SINE MIR 16 159 -49 363 44 0 0 chr1 81324783 81324828 -200868836 + (CA)n Simple_repeat Simple_repeat 2 46 0 511 335 163 41 chr1 81326103 81327111 -200866553 + L2 LINE L2 1751 2881 -433 198 386 35 40 chr1 81327458 81327660 -200866004 + L2 LINE L2 3031 3231 -41 520 326 83 5 chr1 81327663 81327881 -200865783 + MIR SINE MIR 4 238 -24 243 170 0 0 chr1 81327960 81328007 -200865657 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 337 378 25 44 chr1 81328014 81328218 -200865446 - L2 LINE L2 0 3272 3073 21 0 0 0 chr1 81328650 81328671 -200864993 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr1 81333182 81333212 -200860452 + (A)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chr1 81334543 81334569 -200859095 + AT_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chr1 81334570 81334611 -200859053 + (TC)n Simple_repeat Simple_repeat 2 42 0 279 0 0 0 chr1 81334610 81334641 -200859023 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 2016 102 34 27 chr1 81334772 81335066 -200858598 + AluSx SINE Alu 1 296 -16 486 306 58 23 chr1 81335127 81335300 -200858364 - MIR SINE MIR -47 215 37 267 371 7 35 chr1 81336047 81336190 -200857474 + L2 LINE L2 3134 3272 0 181 297 40 27 chr1 81336202 81336276 -200857388 + MIR SINE MIR 110 184 -78 21 36 0 0 chr1 81336795 81336823 -200856841 + AT_rich Low_complexity Low_complexity 1 28 0 220 340 49 97 chr1 81337400 81337973 -200855691 - L2 LINE L2 -40 3232 2690 181 329 98 42 chr1 81338049 81338192 -200855472 + L2 LINE L2 2339 2489 -825 4451 155 22 3 chr1 81338319 81339079 -200854585 + L1PB4 LINE L1 5356 6130 -26 181 57 57 0 chr1 81339088 81339123 -200854541 + (TTAAA)n Simple_repeat Simple_repeat 2 38 0 2834 3 0 13 chr1 81339373 81339688 -200853976 - AluYa5 SINE Alu 0 311 1 219 260 14 0 chr1 81340131 81340204 -200853460 + A-rich Low_complexity Low_complexity 5 78 0 589 143 36 0 chr1 81342330 81342442 -200851222 - L1MA7 LINE L1 -1 6290 6175 366 277 0 0 chr1 81343104 81343187 -200850477 + MLT1F LTR MaLR 1 83 -459 2063 221 66 7 chr1 81343241 81343680 -200849984 + MLT1F LTR MaLR 76 540 -2 268 255 113 0 chr1 81343753 81343859 -200849805 + MIR SINE MIR 79 196 -66 864 234 45 45 chr1 81344561 81344805 -200848859 + MIR SINE MIR 6 249 -13 2143 109 17 0 chr1 81344822 81345124 -200848540 - AluSc SINE Alu -2 307 1 2675 45 0 0 chr1 81346371 81346682 -200846982 + AluY SINE Alu 1 311 0 2276 133 11 13 chr1 81346917 81347293 -200846371 + THE1C LTR MaLR 1 375 0 328 211 26 0 chr1 81347313 81347389 -200846275 + MER116 DNA Mariner 2 79 -1 701 297 56 0 chr1 81348600 81348832 -200844832 - MIR SINE MIR 0 262 18 2279 75 0 0 chr1 81349078 81349378 -200844286 + AluY SINE Alu 1 300 0 258 287 40 30 chr1 81349437 81349538 -200844126 + L2 LINE L2 3201 3302 -11 1237 275 70 81 chr1 81349554 81350499 -200843165 - L2 LINE L2 -5 3308 2379 2210 97 7 32 chr1 81350499 81350808 -200842856 + AluSq SINE Alu 1 301 -12 1237 275 70 81 chr1 81350808 81350832 -200842832 - L2 LINE L2 -934 2379 2356 246 217 19 9 chr1 81351392 81351498 -200842166 + (TA)n Simple_repeat Simple_repeat 2 108 0 25 31 0 0 chr1 81351573 81351605 -200842059 + AT_rich Low_complexity Low_complexity 1 32 0 842 345 41 43 chr1 81352462 81353004 -200840660 - L2 LINE L2 -174 3139 2609 17913 97 25 2 chr1 81353314 81355935 -200837729 + Charlie3 DNA MER1_type 40 2706 -4 21 0 0 0 chr1 81356296 81356317 -200837347 + AT_rich Low_complexity Low_complexity 1 21 0 514 271 136 11 chr1 81357991 81358168 -200835496 + MIR SINE MIR 64 262 0 1406 304 23 32 chr1 81361349 81362141 -200831523 + L2 LINE L2 2509 3293 -20 228 35 0 0 chr1 81362419 81362448 -200831216 + (CA)n Simple_repeat Simple_repeat 2 30 0 1215 244 89 6 chr1 81362449 81362765 -200830899 - MER2 DNA MER2_type -3 342 1 30 0 0 0 chr1 81362803 81362833 -200830831 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 81362984 81363006 -200830658 + AT_rich Low_complexity Low_complexity 1 22 0 1591 154 29 29 chr1 81363022 81363301 -200830363 + MER1B DNA MER1_type 61 339 0 2846 47 17 0 chr1 81363346 81363708 -200829956 - L1PA4 LINE L1 -2 6153 5786 4558 27 2 3 chr1 81363708 81364432 -200829232 + L1PA4 LINE L1 5074 5794 -361 240 236 56 45 chr1 81364740 81364829 -200828835 - MLT1I LTR MaLR -285 124 35 201 343 0 27 chr1 81365407 81365480 -200828184 + L2 LINE L2 3201 3271 -1 6561 63 5 1 chr1 81365561 81366395 -200827269 - L1PA7 LINE L1 -13 6141 5305 2285 66 10 0 chr1 81366402 81366703 -200826961 - L1PA7 LINE L1 -1527 4619 4316 1575 118 4 0 chr1 81366700 81366929 -200826735 + L1PA7 LINE L1 4095 4324 -1822 * 26 74 0 0 chr1 81368358 81368412 -200825252 + AT_rich Low_complexity Low_complexity 1 54 0 365 323 25 19 chr1 81369077 81369235 -200824429 + MIR SINE MIR 92 250 -12 317 277 12 0 chr1 81369350 81369433 -200824231 + (TATG)n Simple_repeat Simple_repeat 4 87 0 22 0 0 0 chr1 81369433 81369455 -200824209 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr1 81369665 81369714 -200823950 + AT_rich Low_complexity Low_complexity 1 49 0 427 339 73 42 chr1 81372473 81372969 -200820695 - L2 LINE L2 -619 2695 2185 238 271 14 0 chr1 81374829 81374899 -200818765 + GA-rich Low_complexity Low_complexity 3 73 0 585 313 103 5 chr1 81375020 81375234 -200818430 - MIR SINE MIR 0 262 28 288 278 125 7 chr1 81375473 81375617 -200818047 + MIR SINE MIR 89 249 -13 614 228 128 0 chr1 81375676 81375825 -200817839 - MIR SINE MIR -11 251 84 293 0 0 26 chr1 81376113 81376151 -200817513 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 221 229 9 28 chr1 81379501 81379610 -200814054 + GA-rich Low_complexity Low_complexity 4 110 0 651 321 50 69 chr1 81381322 81381743 -200811921 + L2 LINE L2 2897 3309 -4 235 229 0 0 chr1 81383242 81383290 -200810374 + L1MC4 LINE L1 6658 6705 -1337 253 98 0 0 chr1 81383323 81383364 -200810300 - L1MC4 LINE L1 -1344 6698 6658 21 57 0 0 chr1 81384024 81384059 -200809605 + AT_rich Low_complexity Low_complexity 1 35 0 288 329 0 0 chr1 81385532 81385605 -200808059 - MIR3 SINE MIR -46 162 90 414 241 115 40 chr1 81385657 81385831 -200807833 + MIR3 SINE MIR 17 203 -5 1032 292 72 18 chr1 81386206 81386719 -200806945 + L1ME4a LINE L1 5363 5903 -218 282 255 73 36 chr1 81386963 81387094 -200806570 + MIR3 SINE MIR 65 203 -5 190 353 15 0 chr1 81388161 81388229 -200805435 + L2 LINE L2 3179 3247 -25 196 371 88 21 chr1 81388427 81388621 -200805043 + MIR SINE MIR 45 251 -11 22 35 0 0 chr1 81388853 81388882 -200804782 + AT_rich Low_complexity Low_complexity 1 29 0 279 342 68 17 chr1 81388907 81389024 -200804640 - MIR SINE MIR -6 256 134 443 314 87 44 chr1 81389067 81389296 -200804368 - MIR SINE MIR -13 249 11 752 241 36 20 chr1 81389543 81389722 -200803942 + MER58A DNA MER1_type 27 211 -2209 1540 184 28 0 chr1 81389722 81390010 -200803654 + AluJb SINE Alu 1 296 -16 752 241 36 20 chr1 81390010 81390025 -200803639 + MER58A DNA MER1_type 211 224 0 334 346 64 5 chr1 81390866 81391068 -200802596 - MIR SINE MIR -36 226 13 1975 212 48 21 chr1 81391131 81391649 -200802015 + L1MC2 LINE L1 5800 6331 -13 259 213 21 0 chr1 81392814 81392861 -200800803 - L2 LINE L2 -66 3206 3159 273 282 51 0 chr1 81393443 81393521 -200800143 + MIR3 SINE MIR 99 180 -28 2128 52 44 0 chr1 81393529 81393832 -200799832 - AluY SINE Alu 0 315 1 308 348 90 57 chr1 81395191 81395490 -200798174 + L2 LINE L2 2949 3257 -15 206 213 21 0 chr1 81396324 81396371 -200797293 + MIR SINE MIR 73 120 -142 6395 94 7 1 chr1 81396557 81397719 -200795945 + L1PA14 LINE L1 4991 6159 -2 204 368 40 0 chr1 81397753 81397829 -200795835 + MER91A DNA MER1_type 118 196 0 4497 60 0 0 chr1 81397935 81398499 -200795165 - L1PA7 LINE L1 -8 6146 5583 462 92 0 0 chr1 81398500 81398565 -200795099 + L1P3 LINE L1 5484 5548 -606 649 284 102 18 chr1 81399060 81399285 -200794379 + MIR SINE MIR 5 248 -14 530 284 31 46 chr1 81399299 81399493 -200794171 + MIR SINE MIR 2 192 -70 224 326 174 0 chr1 81399714 81399800 -200793864 + MIR SINE MIR 56 156 -106 25 0 0 0 chr1 81399914 81399939 -200793725 + AT_rich Low_complexity Low_complexity 1 25 0 2370 73 0 3 chr1 81400180 81400483 -200793181 - AluY SINE Alu -9 302 1 25 0 0 0 chr1 81400566 81400591 -200793073 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr1 81401823 81401854 -200791810 + AT_rich Low_complexity Low_complexity 1 31 0 198 324 14 27 chr1 81402657 81402731 -200790933 - L2 LINE L2 -4 3268 3196 * 642 332 56 48 chr1 81402710 81403105 -200790559 - L3 LINE CR1 -66 1511 1114 219 388 69 0 chr1 81403163 81403279 -200790385 - L2 LINE L2 0 3272 3149 198 226 32 16 chr1 81404679 81404741 -200788923 + MIR3 SINE MIR 9 71 -137 499 281 48 0 chr1 81404933 81405079 -200788585 + MIR SINE MIR 3 155 -107 453 249 11 45 chr1 81406155 81406332 -200787332 - L1MEc LINE L1 -3549 2666 2496 23 33 0 0 chr1 81406696 81406726 -200786938 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 81406890 81406918 -200786746 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 81407358 81407383 -200786281 + AT_rich Low_complexity Low_complexity 1 25 0 466 213 0 0 chr1 81407565 81407659 -200786005 - MER92B LTR ERV1 0 636 543 1162 215 124 43 chr1 81407678 81408050 -200785614 - MER92B LTR ERV1 -233 403 2 2043 124 3 10 chr1 81408234 81408532 -200785132 + AluSx SINE Alu 1 296 -16 3266 220 64 22 chr1 81408758 81408891 -200784773 - L1M4 LINE L1 -1413 4733 4607 2003 113 3 11 chr1 81408891 81409202 -200784462 + AluSq SINE Alu 3 311 0 3266 220 64 22 chr1 81409202 81409962 -200783702 - L1M4 LINE L1 -1539 4607 3802 461 167 0 0 chr1 81409984 81410056 -200783608 - tRNA-Glu-GAG tRNA tRNA -3 72 1 532 320 95 26 chr1 81411308 81411680 -200781984 - L1MEc LINE L1 -4105 2291 1946 2100 108 11 3 chr1 81411680 81411967 -200781697 - AluSc SINE Alu -20 289 1 532 320 95 26 chr1 81411967 81412353 -200781311 - L1MEc LINE L1 -4450 1946 1455 201 39 0 0 chr1 81412353 81412379 -200781285 + (TG)n Simple_repeat Simple_repeat 1 26 0 532 320 95 26 chr1 81412379 81412543 -200781121 - L1MEc LINE L1 -4941 1455 1304 414 175 144 10 chr1 81412576 81412673 -200780991 - AluSg/x SINE Alu -12 297 188 258 32 0 0 chr1 81412912 81412943 -200780721 + (CA)n Simple_repeat Simple_repeat 2 32 0 721 189 8 0 chr1 81413922 81414054 -200779610 - FLAM_C SINE Alu 0 133 1 390 300 40 0 chr1 81414452 81414552 -200779112 + L2 LINE L2 3169 3272 0 22 0 0 0 chr1 81414807 81414829 -200778835 + AT_rich Low_complexity Low_complexity 1 22 0 1944 89 0 16 chr1 81414974 81415231 -200778433 + AluY SINE Alu 1 253 -58 287 260 16 79 chr1 81415437 81415564 -200778100 - L2 LINE L2 -57 3256 3138 212 269 0 19 chr1 81415837 81415889 -200777775 - L2 LINE L2 -12 3301 3251 23 68 0 0 chr1 81415974 81416018 -200777646 + AT_rich Low_complexity Low_complexity 1 44 0 306 0 0 0 chr1 81416607 81416641 -200777023 + (CA)n Simple_repeat Simple_repeat 1 34 0 479 289 128 5 chr1 81416750 81416968 -200776696 + L2 LINE L2 2990 3234 -79 189 214 26 26 chr1 81417044 81417161 -200776503 + (TA)n Simple_repeat Simple_repeat 2 118 0 226 244 0 26 chr1 81417431 81417509 -200776155 + L1MC4 LINE L1 6614 6689 -1353 180 77 0 0 chr1 81417509 81417535 -200776129 + (TC)n Simple_repeat Simple_repeat 2 27 0 351 113 0 0 chr1 81417541 81417603 -200776061 + (GA)n Simple_repeat Simple_repeat 2 63 0 810 193 13 69 chr1 81417810 81418043 -200775621 - AluJb SINE Alu -2 310 91 467 287 75 21 chr1 81419004 81419192 -200774472 + MIR SINE MIR 65 262 0 269 322 43 48 chr1 81420823 81421053 -200772611 - L2 LINE L2 -400 2914 2686 667 271 143 42 chr1 81421236 81421969 -200771695 - L1M4 LINE L1 -1471 4675 3869 458 324 52 27 chr1 81422013 81422497 -200771167 - L1M4 LINE L1 -2368 3778 3283 908 190 6 6 chr1 81422809 81422975 -200770689 + AluSg/x SINE Alu 138 306 -6 2358 148 45 13 chr1 81422975 81423447 -200770217 + L1MA5 LINE L1 5814 6300 0 1940 160 46 8 chr1 81423607 81424121 -200769543 + L1M2 LINE L1 4992 5524 -743 2239 98 3 0 chr1 81424124 81424411 -200769253 - AluSx SINE Alu -24 288 1 22 0 0 0 chr1 81424583 81424605 -200769059 + AT_rich Low_complexity Low_complexity 1 22 0 248 169 36 12 chr1 81424609 81424692 -200768972 + A-rich Low_complexity Low_complexity 5 89 0 24 32 0 0 chr1 81425105 81425136 -200768528 + AT_rich Low_complexity Low_complexity 1 31 0 249 281 0 12 chr1 81425251 81425333 -200768331 - MLT1I LTR MaLR -7 402 322 745 286 72 102 chr1 81425701 81426180 -200767484 - L1MEd LINE L1 -4635 1494 1041 1978 149 0 0 chr1 81426180 81426469 -200767195 - AluSx SINE Alu -23 289 1 745 286 72 102 chr1 81426469 81426897 -200766767 - L1MEd LINE L1 -5088 1041 601 2093 185 40 19 chr1 81427003 81427424 -200766240 + MSTB1 LTR MaLR 1 430 -2 234 305 52 58 chr1 81427441 81427615 -200766049 - L1MEd LINE L1 -5629 490 318 308 289 92 21 chr1 81427919 81428061 -200765603 - L1M4 LINE L1 -3037 3109 2958 22 0 0 0 chr1 81428115 81428137 -200765527 + AT_rich Low_complexity Low_complexity 1 22 0 2320 69 0 3 chr1 81428331 81428622 -200765042 + AluY SINE Alu 1 290 -21 34 24 0 0 chr1 81428631 81428672 -200764992 + AT_rich Low_complexity Low_complexity 1 41 0 231 203 0 0 chr1 81428806 81428865 -200764799 + (TG)n Simple_repeat Simple_repeat 1 59 0 1936 132 10 0 chr1 81429666 81429954 -200763710 - AluSq SINE Alu -14 299 9 1034 227 31 59 chr1 81430713 81431034 -200762630 - MLT1J1 LTR MaLR -112 334 23 24 0 0 0 chr1 81432351 81432375 -200761289 + AT_rich Low_complexity Low_complexity 1 24 0 397 275 144 68 chr1 81432377 81432613 -200761051 - MIR SINE MIR -7 255 2 403 132 46 7 chr1 81432652 81432804 -200760860 + (TA)n Simple_repeat Simple_repeat 2 159 0 1859 106 8 4 chr1 81432805 81433061 -200760603 - AluSx SINE Alu -17 295 39 460 327 66 9 chr1 81433165 81433376 -200760288 - MIR SINE MIR -37 225 3 449 319 88 12 chr1 81433666 81433826 -200759838 - MIR3 SINE MIR -2 206 35 263 226 20 10 chr1 81434126 81434228 -200759436 + (TTAAA)n Simple_repeat Simple_repeat 4 106 0 297 0 0 0 chr1 81434908 81434941 -200758723 + (CA)n Simple_repeat Simple_repeat 2 34 0 459 35 0 0 chr1 81434950 81435007 -200758657 + (GA)n Simple_repeat Simple_repeat 2 58 0 180 286 24 0 chr1 81437446 81437488 -200756176 + MIR SINE MIR 111 153 -55 421 229 15 84 chr1 81437713 81437844 -200755820 - L2 LINE L2 -1 3312 3191 321 273 14 70 chr1 81437860 81438003 -200755661 - MIR SINE MIR -56 206 72 219 36 0 0 chr1 81438587 81438615 -200755049 + (TG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr1 81438654 81438675 -200754989 + AT_rich Low_complexity Low_complexity 1 21 0 1377 223 131 42 chr1 81440021 81440448 -200753216 + LTR40a LTR ERVL 1 465 -54 352 311 31 66 chr1 81441032 81441228 -200752436 - MER5A DNA MER1_type 0 189 1 22 35 0 0 chr1 81443921 81443950 -200749714 + AT_rich Low_complexity Low_complexity 1 29 0 236 79 26 0 chr1 81444015 81444053 -200749611 + THE1A-int LTR MaLR 1542 1580 0 2205 115 50 0 chr1 81444053 81444391 -200749273 + THE1A LTR MaLR 1 355 0 26 50 0 0 chr1 81444477 81444517 -200749147 + AT_rich Low_complexity Low_complexity 1 40 0 317 149 20 2 chr1 81444836 81444901 -200748763 - MLT1E2 LTR MaLR 0 626 402 1904 261 67 29 chr1 81444943 81445052 -200748612 - MLT1E2 LTR MaLR 0 626 523 1322 236 77 51 chr1 81445052 81445544 -200748120 + MLT1D LTR MaLR 1 505 0 1904 261 67 29 chr1 81445544 81446029 -200747635 - MLT1E2 LTR MaLR -103 523 9 27 0 0 0 chr1 81446079 81446106 -200747558 + AT_rich Low_complexity Low_complexity 1 27 0 215 200 0 0 chr1 81446513 81446553 -200747111 + CT-rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr1 81446936 81446972 -200746692 + AT_rich Low_complexity Low_complexity 1 36 0 1062 336 55 42 chr1 81447005 81448484 -200745180 + L1ME1 LINE L1 60 1557 -4839 360 0 0 0 chr1 81448504 81448544 -200745120 + (CA)n Simple_repeat Simple_repeat 1 40 0 1724 298 66 15 chr1 81448544 81449556 -200744108 + L1ME1 LINE L1 3109 4172 -2043 1005 229 70 36 chr1 81449553 81449911 -200743753 + L1M4 LINE L1 4958 5327 -819 * 1129 117 18 0 chr1 81449914 81450198 -200743466 + AluY SINE Alu 136 422 0 291 28 0 0 chr1 81450198 81450234 -200743430 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 11114 183 19 76 chr1 81450248 81452773 -200740891 + L1M1 LINE L1 20 2400 -5165 854 154 89 0 chr1 81452770 81452939 -200740725 + L1ME1 LINE L1 4638 4821 -1394 * 4154 110 39 14 chr1 81452937 81453084 -200740580 - L1PA11 LINE L1 -7 6167 6021 2094 223 8 91 chr1 81453084 81453809 -200739855 - L1MA9 LINE L1 -312 6000 5336 6780 129 19 21 chr1 81453810 81455382 -200738282 + L1MA1 LINE L1 4808 6371 0 1923 245 50 77 chr1 81455389 81455437 -200738227 + L1ME1 LINE L1 5386 5434 -801 1858 77 11 29 chr1 81455437 81455711 -200737953 + AluY SINE Alu 40 308 -3 1923 245 50 77 chr1 81455711 81456516 -200737148 + L1ME1 LINE L1 5434 6216 -19 347 286 0 0 chr1 81456524 81456622 -200737042 + L1ME LINE L1 5497 5594 -637 1599 142 168 45 chr1 81457022 81457403 -200736261 + MSTA LTR MaLR 1 428 0 248 233 96 0 chr1 81458265 81458338 -200735326 + MIR SINE MIR 82 161 -101 1808 152 70 17 chr1 81458339 81458695 -200734969 - THE1C LTR MaLR 0 375 1 9839 133 10 31 chr1 81458695 81460309 -200733355 - THE1C-int LTR MaLR 0 1580 1 580 128 11 0 chr1 81460311 81460405 -200733259 - THE1C LTR MaLR -2 373 279 1933 174 5 65 chr1 81461588 81462003 -200731661 + MLT1B LTR MaLR 1 390 0 2129 161 61 17 chr1 81462058 81462468 -200731196 + MSTA LTR MaLR 1 428 0 206 276 26 0 chr1 81463242 81463318 -200730346 + (TAAA)n Simple_repeat Simple_repeat 4 81 0 1527 90 0 0 chr1 81463552 81463763 -200729901 - L1PA7 LINE L1 0 6154 5944 526 334 129 27 chr1 81465284 81465479 -200728185 - L2 LINE L2 0 3313 3139 660 241 94 15 chr1 81465479 81465682 -200727982 - MER20 DNA MER1_type 0 219 1 526 334 129 27 chr1 81465682 81466142 -200727522 - L2 LINE L2 -174 3139 2592 200 173 19 19 chr1 81466260 81466312 -200727352 + T-rich Low_complexity Low_complexity 2 53 0 594 221 26 0 chr1 81466653 81466807 -200726857 - L1MA10 LINE L1 -1 6333 6176 313 242 83 17 chr1 81466821 81466941 -200726723 - L1ME2 LINE L1 -141 6023 5896 348 278 73 24 chr1 81466949 81467154 -200726510 - L1MCa LINE L1 -4872 1554 1340 2553 239 63 32 chr1 81467154 81467869 -200725795 + MER21B LTR ERV1 13 749 -114 1620 254 63 39 chr1 81467929 81468642 -200725022 - L1MEc LINE L1 -5052 1344 615 907 305 32 12 chr1 81468740 81469081 -200724583 - L1MEc LINE L1 -6013 383 36 651 287 102 54 chr1 81470347 81470681 -200722983 - MLT1K LTR MaLR -55 533 184 321 307 66 24 chr1 81472550 81472716 -200720948 + MIR SINE MIR 74 246 -16 859 265 70 90 chr1 81472934 81473477 -200720187 + L2 LINE L2 2782 3312 -1 971 178 13 59 chr1 81473555 81473731 -200719933 - AluSq SINE Alu -5 308 144 233 0 62 0 chr1 81473731 81473763 -200719901 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 971 178 13 59 chr1 81473763 81473822 -200719842 - AluSq SINE Alu -169 144 84 25 51 0 0 chr1 81474419 81474458 -200719206 + AT_rich Low_complexity Low_complexity 1 39 0 284 82 0 20 chr1 81474470 81474519 -200719145 + (TA)n Simple_repeat Simple_repeat 1 48 0 429 20 0 0 chr1 81474803 81474853 -200718811 + (TG)n Simple_repeat Simple_repeat 2 51 0 1557 172 32 41 chr1 81475961 81476275 -200717389 + AluJb SINE Alu 1 311 -1 252 0 0 0 chr1 81476418 81476446 -200717218 + (TG)n Simple_repeat Simple_repeat 1 28 0 489 179 41 73 chr1 81476831 81476954 -200716710 + MER103 DNA DNA 3 121 -45 758 277 29 29 chr1 81478154 81478414 -200715250 + MIR SINE MIR 4 262 0 180 152 0 0 chr1 81479553 81479586 -200714078 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 80 0 0 chr1 81479598 81479648 -200714016 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr1 81481507 81481529 -200712135 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2969 97 24 56 chr1 81482941 81483407 -200710257 + MLT2A2 LTR ERVL 3 453 0 218 0 94 0 chr1 81483414 81483446 -200710218 + A-rich Low_complexity Low_complexity 1 35 0 182 62 31 0 chr1 81484638 81484670 -200708994 + (TTAAA)n Simple_repeat Simple_repeat 4 36 0 976 243 23 12 chr1 81485476 81485571 -200708093 + MLT1A2 LTR MaLR 1 93 -281 2761 123 24 0 chr1 81485571 81485986 -200707678 - MSTA LTR MaLR -3 425 1 976 243 23 12 chr1 81485986 81486149 -200707515 + MLT1A2 LTR MaLR 93 262 -112 2259 257 40 19 chr1 81486203 81486783 -200706881 + MLT1A2-int LTR MaLR 1139 1730 -5 1211 232 104 29 chr1 81486791 81487136 -200706528 + MLT1A2 LTR MaLR 4 374 0 226 302 119 44 chr1 81488106 81488265 -200705399 + MIR SINE MIR 72 242 -20 315 0 0 0 chr1 81488269 81488304 -200705360 + (TAA)n Simple_repeat Simple_repeat 2 36 0 215 227 53 0 chr1 81488324 81488399 -200705265 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 3686 197 51 71 chr1 81488400 81489272 -200704392 + MER39B-int LTR ERV1 5113 5960 -371 207 0 0 0 chr1 81489272 81489295 -200704369 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3686 197 51 71 chr1 81489295 81489518 -200704146 + MER39B-int LTR ERV1 5960 6186 -145 373 139 14 28 chr1 81489570 81489642 -200704022 + MER39B LTR ERV1 1 71 -582 446 157 22 0 chr1 81489646 81489735 -200703929 + AluSg/x SINE Alu 217 307 -2 1962 182 131 9 chr1 81489739 81490174 -200703490 + MER39 LTR ERV1 217 704 -3 29 47 0 0 chr1 81490193 81490236 -200703428 + AT_rich Low_complexity Low_complexity 1 43 0 489 110 0 0 chr1 81490648 81490721 -200702943 + (CA)n Simple_repeat Simple_repeat 2 74 0 1985 153 0 0 chr1 81491354 81491649 -200702015 - AluSx SINE Alu -15 297 3 238 378 64 6 chr1 81491944 81492149 -200701515 - MIR3 SINE MIR -46 216 3 25 31 0 0 chr1 81492664 81492696 -200700968 + AT_rich Low_complexity Low_complexity 1 32 0 245 303 42 67 chr1 81493279 81493444 -200700220 + MIR SINE MIR 100 260 -2 2768 16 0 0 chr1 81493911 81494219 -200699445 - AluYb8 SINE Alu -10 308 1 2394 84 43 6 chr1 81494335 81494682 -200698982 - THE1B LTR MaLR 0 364 5 957 236 27 14 chr1 81496125 81496345 -200697319 - MER58A DNA MER1_type -1 223 1 307 350 36 15 chr1 81496666 81496803 -200696861 - L3 LINE CR1 -66 1511 1372 291 308 70 43 chr1 81496928 81497113 -200696551 + MIR SINE MIR 12 201 -61 317 247 31 21 chr1 81498376 81498473 -200695191 + L1MC5 LINE L1 7792 7889 -72 1512 313 162 21 chr1 81498511 81499581 -200694083 + L2 LINE L2 1734 2954 -360 255 377 19 13 chr1 81499663 81499822 -200693842 + L2 LINE L2 3149 3308 -5 23 0 0 0 chr1 81499829 81499852 -200693812 + AT_rich Low_complexity Low_complexity 1 23 0 225 128 0 0 chr1 81500313 81500360 -200693304 + (A)n Simple_repeat Simple_repeat 1 47 0 594 322 39 27 chr1 81501857 81502115 -200691549 - MIR SINE MIR 0 262 2 207 167 0 0 chr1 81502293 81502329 -200691335 - L2 LINE L2 -5 3308 3273 222 234 0 0 chr1 81502991 81503038 -200690626 + MIR SINE MIR 211 257 -5 2212 121 0 0 chr1 81503214 81503521 -200690143 - AluY SINE Alu -2 309 3 1981 131 3 16 chr1 81503523 81503835 -200689829 - AluSx SINE Alu -4 308 1 918 243 28 0 chr1 81505099 81505317 -200688347 - MER58A DNA MER1_type 0 224 1 2729 207 44 28 chr1 81505613 81506411 -200687253 + L1MDa LINE L1 1876 2684 -3856 963 248 14 0 chr1 81506414 81506636 -200687028 + L1MD2 LINE L1 5689 5913 -446 714 245 29 0 chr1 81506753 81506957 -200686707 + L1MDa LINE L1 1876 2085 -4455 474 256 70 13 chr1 81506958 81507114 -200686550 + L1MD2 LINE L1 5981 6145 -214 424 239 11 0 chr1 81507322 81507414 -200686250 + L1MD3 LINE L1 7892 7984 -11 327 25 0 0 chr1 81507673 81507713 -200685951 + (TG)n Simple_repeat Simple_repeat 2 41 0 304 378 82 59 chr1 81507847 81508188 -200685476 - L2 LINE L2 0 3272 2924 9159 96 13 3 chr1 81508224 81509498 -200684166 + HSMAR1 DNA Mariner 1 1287 0 2420 73 3 0 chr1 81509820 81510120 -200683544 + AluSg SINE Alu 1 301 -9 2221 163 49 5 chr1 81510607 81511017 -200682647 + MSTA LTR MaLR 1 428 0 8619 178 34 16 chr1 81511017 81512621 -200681043 + MSTA-int LTR MaLR 1 1632 -19 2094 161 45 33 chr1 81512643 81513066 -200680598 + MSTA LTR MaLR 1 428 0 202 253 11 22 chr1 81513085 81513176 -200680488 + T-rich Low_complexity Low_complexity 1 90 0 2446 129 8 8 chr1 81513337 81513710 -200679954 + THE1C LTR MaLR 1 373 -2 1365 236 110 45 chr1 81514469 81514651 -200679013 + L1MC4 LINE L1 6829 6998 -1044 5801 57 4 1 chr1 81514651 81515386 -200678278 + L1PA7 LINE L1 5415 6151 -3 1922 106 8 0 chr1 81515386 81515651 -200678013 + AluSp SINE Alu 40 306 -7 1365 236 110 45 chr1 81515651 81516131 -200677533 + L1MC4 LINE L1 6997 7535 -507 1282 172 0 0 chr1 81516141 81516339 -200677325 + AluSg/x SINE Alu 92 289 -23 939 215 68 108 chr1 81516373 81516875 -200676789 + L1MC4 LINE L1 7560 8041 -1 226 312 30 16 chr1 81518863 81518967 -200674697 + MIR SINE MIR 32 142 -66 180 309 0 55 chr1 81519200 81519255 -200674409 + MIR SINE MIR 19 70 -138 1999 118 4 0 chr1 81519275 81519555 -200674109 - AluSx SINE Alu -12 300 20 368 237 21 10 chr1 81519741 81519838 -200673826 - L1ME LINE L1 -462 5659 5562 226 294 0 15 chr1 81521053 81521121 -200672543 - MIR SINE MIR -121 141 75 903 109 0 0 chr1 81521223 81521399 -200672265 + AluSg/x SINE Alu 155 330 0 250 226 78 61 chr1 81522287 81522402 -200671262 + MER103 DNA DNA 48 164 -2 601 309 50 6 chr1 81522531 81522712 -200670952 + MIR SINE MIR 46 234 -28 186 43 0 0 chr1 81523521 81523544 -200670120 + (TA)n Simple_repeat Simple_repeat 2 24 0 1658 182 73 0 chr1 81523569 81523909 -200669755 + MER47A DNA MER2_type 2 366 0 1957 126 7 10 chr1 81524923 81525225 -200668439 - AluSx SINE Alu -11 301 1 339 25 0 0 chr1 81525397 81525437 -200668227 + (A)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr1 81526596 81526632 -200667032 + AT_rich Low_complexity Low_complexity 1 36 0 1571 168 134 3 chr1 81527426 81527747 -200665917 + MLT1A1 LTR MaLR 3 365 0 411 284 104 52 chr1 81527792 81528003 -200665661 + L2 LINE L2 3077 3298 -15 414 57 0 0 chr1 81529180 81529233 -200664431 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 368 237 21 10 chr1 81530808 81530905 -200662759 + L1ME LINE L1 5562 5659 -462 278 253 67 0 chr1 81531505 81531580 -200662084 - MER116 DNA Mariner 0 80 1 27 49 0 0 chr1 81531592 81531633 -200662031 + AT_rich Low_complexity Low_complexity 1 41 0 593 280 81 55 chr1 81532045 81532206 -200661458 + MLT1H1 LTR MaLR 1 173 -382 240 35 0 0 chr1 81532206 81532235 -200661429 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 593 280 81 55 chr1 81532235 81532344 -200661320 + MLT1H1 LTR MaLR 173 278 -277 285 260 0 0 chr1 81532476 81532549 -200661115 + MLT1G1 LTR MaLR 496 568 -27 453 206 103 8 chr1 81532552 81532678 -200660986 + L1M4 LINE L1 4695 4832 -1314 381 321 103 12 chr1 81532969 81533134 -200660530 - MER91B DNA MER1_type -9 181 2 23 0 0 0 chr1 81533515 81533538 -200660126 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr1 81534035 81534056 -200659608 + (TG)n Simple_repeat Simple_repeat 2 22 0 255 316 110 13 chr1 81534168 81534323 -200659341 - L2 LINE L2 0 3313 3144 344 409 53 24 chr1 81535377 81535717 -200657947 + L3 LINE CR1 338 687 -890 348 299 101 34 chr1 81535961 81536168 -200657496 + L3 LINE CR1 1350 1570 -7 1241 233 94 6 chr1 81536522 81536852 -200656812 - MER63 DNA MER1_type -30 1032 674 587 231 118 21 chr1 81538248 81538434 -200655230 + MLT1J2 LTR MaLR 1 204 -246 597 96 0 0 chr1 81538538 81538621 -200655043 - AluSg SINE Alu -12 298 216 1023 69 0 8 chr1 81538636 81538766 -200654898 - AluSg SINE Alu -181 129 1 414 311 114 32 chr1 81538898 81539545 -200654119 + L1MC4a LINE L1 3600 4299 -1847 365 299 107 52 chr1 81539545 81540480 -200653184 + L1MC4a LINE L1 4549 5540 -624 181 211 19 58 chr1 81540603 81540655 -200653009 - MER5A DNA MER1_type -11 178 129 * 310 254 289 0 chr1 81540625 81540739 -200652925 + MER5A DNA MER1_type 43 189 0 350 312 0 11 chr1 81540752 81540845 -200652819 - MER5B DNA MER1_type 0 178 87 301 295 78 62 chr1 81540922 81541166 -200652498 + L1MC4a LINE L1 5679 5926 -1882 234 0 0 0 chr1 81541916 81541942 -200651722 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 347 227 27 120 chr1 81542469 81542619 -200651045 - MIR SINE MIR -10 252 117 575 275 79 18 chr1 81542774 81543003 -200650661 + MIR SINE MIR 19 261 -1 505 348 70 2 chr1 81543828 81544064 -200649600 - MIR SINE MIR 0 262 15 6882 64 2 0 chr1 81544404 81545076 -200648588 - L1PA7 LINE L1 0 6154 5487 2195 106 0 0 chr1 81545076 81545369 -200648295 - AluY SINE Alu -18 293 1 6882 64 2 0 chr1 81545369 81545850 -200647814 - L1PA7 LINE L1 -667 5487 5009 2241 299 72 33 chr1 81545983 81547153 -200646511 + L2 LINE L2 1455 2760 -554 3857 259 49 36 chr1 81547172 81548387 -200645277 + MLT1B-int LTR MaLR 140 1370 -1 1170 212 73 58 chr1 81548397 81548779 -200644885 + MLT1B LTR MaLR 3 390 0 830 324 144 22 chr1 81548779 81549286 -200644378 + L2 LINE L2 2755 3312 -1 39 68 0 0 chr1 81549360 81549434 -200644230 + AT_rich Low_complexity Low_complexity 1 74 0 7416 94 6 21 chr1 81549811 81550899 -200642765 + MER11C LTR ERVK 1 1071 0 36 53 0 0 chr1 81551565 81551622 -200642042 + AT_rich Low_complexity Low_complexity 1 57 0 235 330 11 0 chr1 81551980 81552068 -200641596 - MIR SINE MIR -26 236 148 2354 81 0 13 chr1 81552247 81552554 -200641110 - AluY SINE Alu -8 303 1 381 233 132 31 chr1 81553753 81553882 -200639782 - MIR SINE MIR -45 217 76 233 305 12 12 chr1 81554780 81554862 -200638802 - L2 LINE L2 -2 3311 3230 228 67 0 0 chr1 81555089 81555119 -200638545 + (TG)n Simple_repeat Simple_repeat 1 30 0 2226 131 121 5 chr1 81555921 81556302 -200637362 + MSTA LTR MaLR 1 425 -3 286 303 179 0 chr1 81556576 81556721 -200636943 - MIR SINE MIR -14 248 78 361 224 181 58 chr1 81556722 81556927 -200636737 + L2 LINE L2 2946 3175 -138 300 339 33 8 chr1 81557022 81557143 -200636521 + L2 LINE L2 3190 3313 0 216 279 0 0 chr1 81557154 81557197 -200636467 - MIR SINE MIR -184 78 36 612 0 0 0 chr1 81557217 81557285 -200636379 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 17504 135 10 12 chr1 81557291 81561042 -200632622 - L1PA10 LINE L1 -28 6140 2389 907 309 165 49 chr1 81561297 81561704 -200631960 + L2 LINE L2 951 1309 -2005 2389 143 3 0 chr1 81561704 81562067 -200631597 - THE1B LTR MaLR 0 364 1 907 309 165 49 chr1 81562067 81562521 -200631143 + L2 LINE L2 1309 1912 -1402 538 310 104 19 chr1 81562637 81562905 -200630759 + LTR16A LTR ERVL 155 445 -5 257 311 14 0 chr1 81563196 81563270 -200630394 + MER3 DNA MER1_type 38 112 -97 4847 130 18 15 chr1 81563288 81564082 -200629582 + L1PA15 LINE L1 5370 6165 0 352 126 0 69 chr1 81564238 81564325 -200629339 + Charlie5 DNA MER1_type 2538 2618 0 297 344 0 0 chr1 81564363 81564459 -200629205 + ERVL LTR ERVL 343 438 -4558 619 256 5 14 chr1 81564778 81564993 -200628671 + HAL1 LINE L1 971 1183 -1324 3707 303 68 18 chr1 81565122 81566716 -200626948 + ERVL LTR ERVL 1099 2835 -2161 592 331 59 31 chr1 81566753 81567147 -200626517 + ERVL LTR ERVL 2903 3309 -2176 1353 348 59 22 chr1 81567204 81568442 -200625222 + ERVL LTR ERVL 3457 4800 -727 219 341 111 40 chr1 81569745 81569871 -200623793 + MIR3 SINE MIR 15 149 -59 2635 224 84 27 chr1 81569895 81570637 -200623027 - L1ME2 LINE L1 -1 6163 5380 529 351 41 8 chr1 81570911 81571156 -200622508 + MIR SINE MIR 2 254 -8 209 235 20 0 chr1 81573880 81573931 -200619733 + CT-rich Low_complexity Low_complexity 1 52 0 332 105 35 23 chr1 81575010 81575096 -200618568 + A-rich Low_complexity Low_complexity 2 88 0 210 350 0 0 chr1 81575607 81575667 -200617997 - L2 LINE L2 0 3272 3213 813 236 20 25 chr1 81575682 81575885 -200617779 - MER58A DNA MER1_type -16 208 7 264 417 22 7 chr1 81576873 81577012 -200616652 - L2 LINE L2 -20 3252 3112 350 222 0 0 chr1 81579351 81579414 -200614250 + L2 LINE L2 3210 3272 0 1447 246 45 40 chr1 81579602 81580046 -200613618 + MLT2B1 LTR ERVL 1 446 -74 360 0 0 0 chr1 81580259 81580299 -200613365 + (CA)n Simple_repeat Simple_repeat 1 40 0 840 298 124 18 chr1 81580300 81580797 -200612867 - MLT1H LTR MaLR -5 590 1 372 324 42 14 chr1 81581105 81581247 -200612417 + MIR SINE MIR 7 152 -110 1421 161 92 0 chr1 81581596 81581845 -200611819 + AluSx SINE Alu 38 309 -3 210 71 0 0 chr1 81581859 81581887 -200611777 + (TA)n Simple_repeat Simple_repeat 2 29 0 276 212 0 0 chr1 81582274 81582340 -200611324 + GA-rich Low_complexity Low_complexity 3 68 0 326 270 236 28 chr1 81582630 81582808 -200610856 - MIR SINE MIR -29 233 19 192 225 0 56 chr1 81582909 81582980 -200610684 - L3b LINE CR1 -415 1168 1102 197 310 155 25 chr1 81584036 81584236 -200609428 + L3 LINE CR1 621 846 -731 2143 121 0 26 chr1 81584585 81584898 -200608766 - AluSx SINE Alu -7 305 1 1733 218 16 43 chr1 81586094 81586517 -200607147 + MLT2D LTR ERVL 1 412 -2 23 78 0 0 chr1 81586626 81586677 -200606987 + AT_rich Low_complexity Low_complexity 1 51 0 215 331 81 3 chr1 81586959 81587120 -200606544 + MIR SINE MIR 2 219 -43 190 308 225 17 chr1 81587341 81587461 -200606203 - MIR3 SINE MIR -62 146 2 182 339 0 0 chr1 81587619 81587681 -200605983 + L3b LINE CR1 1397 1458 -125 26 50 0 0 chr1 81590722 81590762 -200602902 + AT_rich Low_complexity Low_complexity 1 40 0 609 246 93 22 chr1 81590920 81591103 -200602561 - MIR SINE MIR -6 256 61 336 127 0 0 chr1 81591105 81591160 -200602504 + (CCTA)n Simple_repeat Simple_repeat 1 55 0 1492 204 0 14 chr1 81591160 81591454 -200602210 - AluJo SINE Alu -22 290 1 339 89 0 0 chr1 81591762 81591818 -200601846 + (CA)n Simple_repeat Simple_repeat 1 56 0 1664 216 52 0 chr1 81592011 81592358 -200601306 - MLT1A1 LTR MaLR 0 365 1 620 158 13 51 chr1 81592637 81592690 -200600974 - L1MA8 LINE L1 -13 6278 6225 13832 139 23 26 chr1 81592690 81594196 -200599468 + Tigger1 DNA MER2_type 1 1496 -922 2154 108 3 13 chr1 81594196 81594501 -200599163 + AluSg SINE Alu 1 302 -8 13832 139 23 26 chr1 81594501 81595421 -200598243 + Tigger1 DNA MER2_type 1496 2418 0 620 158 13 51 chr1 81595421 81595525 -200598139 - L1MA8 LINE L1 -66 6225 6127 1571 206 3 0 chr1 81595525 81595846 -200597818 - AluJo SINE Alu 0 322 1 24 0 0 0 chr1 81596816 81596840 -200596824 + AT_rich Low_complexity Low_complexity 1 24 0 302 347 74 40 chr1 81597170 81597346 -200596318 + MIR SINE MIR 3 184 -78 205 271 17 17 chr1 81597376 81597435 -200596229 + MIR SINE MIR 1 59 -203 236 267 47 23 chr1 81597893 81597979 -200595685 + Charlie8 DNA MER1_type 2325 2412 -5 189 0 0 0 chr1 81598002 81598023 -200595641 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 259 294 0 0 chr1 81599721 81599789 -200593875 + L2 LINE L2 3242 3309 -4 2202 115 10 51 chr1 81599928 81600318 -200593346 - THE1C LTR MaLR -1 374 1 225 232 71 18 chr1 81601820 81601876 -200591788 - L2 LINE L2 0 3272 3214 1867 162 3 49 chr1 81602720 81603047 -200590617 + AluJb SINE Alu 1 312 0 1061 319 41 14 chr1 81604291 81604859 -200588805 + L2 LINE L2 2563 3147 -166 593 245 39 32 chr1 81604902 81605057 -200588607 - MER58A DNA MER1_type 0 157 2 268 294 74 61 chr1 81605059 81605222 -200588442 + L2 LINE L2 3141 3305 -8 246 279 54 62 chr1 81606095 81606224 -200587440 - MIR3 SINE MIR 0 208 81 729 224 161 24 chr1 81606498 81606703 -200586961 + MIR SINE MIR 8 240 -22 6082 123 9 1 chr1 81608082 81609014 -200584650 + L1PA11 LINE L1 5231 6174 0 310 265 73 44 chr1 81609274 81609410 -200584254 - MIR SINE MIR -41 221 82 3500 64 2 33 chr1 81610662 81611146 -200582518 + L1PA7 LINE L1 5679 6147 -7 243 282 106 0 chr1 81612268 81612353 -200581311 + MIR SINE MIR 97 190 -72 1876 109 0 73 chr1 81612461 81612763 -200580901 + AluSx SINE Alu 1 280 -32 252 373 0 8 chr1 81612848 81612974 -200580690 + L3 LINE CR1 1189 1313 -264 1422 247 88 6 chr1 81613046 81613589 -200580075 - MER69 DNA AcHobo -144 2382 1795 396 302 217 0 chr1 81613592 81613804 -200579860 - MER69 DNA AcHobo -2136 390 133 450 120 19 9 chr1 81613808 81613916 -200579748 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 377 293 9 9 chr1 81613923 81614029 -200579635 - MER69 DNA AcHobo -1120 106 1 2286 100 7 0 chr1 81615265 81615574 -200578090 - AluSx SINE Alu -1 311 1 561 288 102 20 chr1 81617810 81618105 -200575559 + MLT1I LTR MaLR 89 407 -2 189 0 0 0 chr1 81618513 81618534 -200575130 + (A)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr1 81618649 81618682 -200574982 + AT_rich Low_complexity Low_complexity 1 33 0 238 298 89 48 chr1 81618803 81618971 -200574693 + MIR SINE MIR 32 206 -56 1741 198 0 10 chr1 81620228 81620541 -200573123 - AluJo SINE Alu -2 310 1 403 377 8 8 chr1 81620950 81621080 -200572584 - MER91A DNA MER1_type -66 130 1 1300 186 34 15 chr1 81621656 81621920 -200571744 + AluJb SINE Alu 34 302 -10 590 60 0 12 chr1 81621950 81622034 -200571630 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 188 33 0 33 chr1 81622533 81622563 -200571101 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2132 162 16 8 chr1 81622679 81623050 -200570614 - MLT1B LTR MaLR -2 388 15 23 78 0 0 chr1 81623103 81623154 -200570510 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 81623286 81623308 -200570356 + AT_rich Low_complexity Low_complexity 1 22 0 713 217 56 6 chr1 81623703 81623883 -200569781 - MER5A DNA MER1_type 0 189 1 1697 84 5 0 chr1 81624328 81624543 -200569121 + AluSp SINE Alu 83 298 -15 25 0 0 0 chr1 81625631 81625656 -200568008 + AT_rich Low_complexity Low_complexity 1 25 0 251 339 138 0 chr1 81628215 81628345 -200565319 + MIR SINE MIR 67 214 -48 2102 53 0 0 chr1 81628970 81629234 -200564430 - L1PA5 LINE L1 0 6154 5891 218 259 17 35 chr1 81629904 81629962 -200563702 - L3 LINE CR1 -2 1575 1519 219 88 0 0 chr1 81630824 81630858 -200562806 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2646 133 14 23 chr1 81632311 81632748 -200560916 - Tigger2a DNA MER2_type -1 433 1 1336 150 53 0 chr1 81632905 81633151 -200560513 - L1MA5A LINE L1 0 6297 6039 396 0 0 0 chr1 81633387 81633431 -200560233 + (CA)n Simple_repeat Simple_repeat 2 45 0 43052 29 21 1 chr1 81633598 81639630 -200554034 + L1PA2 LINE L1 1 6155 0 510 257 34 0 chr1 81639821 81639969 -200553695 - MIR SINE MIR -12 250 98 999 157 0 13 chr1 81640154 81640313 -200553351 + FAM SINE Alu 1 157 -18 312 244 89 0 chr1 81640605 81640695 -200552969 - MIR SINE MIR -8 254 157 3297 223 40 12 chr1 81640702 81641430 -200552234 - L1MB7 LINE L1 -12 6172 5383 1950 106 8 0 chr1 81641430 81641695 -200551969 - AluSx SINE Alu -8 304 38 3297 223 40 12 chr1 81641695 81642284 -200551380 - L1MB7 LINE L1 -801 5383 4812 360 308 123 0 chr1 81642287 81642417 -200551247 - MIR SINE MIR -109 153 8 209 89 44 22 chr1 81642530 81642575 -200551089 + (TA)n Simple_repeat Simple_repeat 1 46 0 2477 65 0 0 chr1 81643728 81644036 -200549628 + AluY SINE Alu 1 308 -3 250 206 43 11 chr1 81644194 81644286 -200549378 + (TA)n Simple_repeat Simple_repeat 1 95 0 305 298 48 8 chr1 81644286 81644410 -200549254 + L1MC4 LINE L1 6575 6703 -1339 246 62 0 0 chr1 81644419 81644451 -200549213 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 111 0 0 chr1 81646320 81646347 -200547317 + (CAT)n Simple_repeat Simple_repeat 1 27 0 351 284 130 30 chr1 81646729 81646898 -200546766 + L2 LINE L2 3123 3308 -5 2429 89 0 0 chr1 81647062 81647364 -200546300 - AluSg SINE Alu -8 302 1 32 43 0 0 chr1 81648666 81648712 -200544952 + AT_rich Low_complexity Low_complexity 1 46 0 222 272 0 48 chr1 81649055 81649158 -200544506 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr1 81649221 81649244 -200544420 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 81649637 81649665 -200543999 + AT_rich Low_complexity Low_complexity 1 28 0 28 107 0 0 chr1 81650648 81650760 -200542904 + AT_rich Low_complexity Low_complexity 1 112 0 995 286 34 16 chr1 81651283 81651605 -200542059 + MER93b LTR ERV1 29 356 -17 1196 116 0 21 chr1 81651606 81651795 -200541869 + L1PB1 LINE L1 5964 6148 -3 37 23 0 0 chr1 81651798 81651842 -200541822 + AT_rich Low_complexity Low_complexity 1 44 0 252 79 0 0 chr1 81652049 81652087 -200541577 + MER57A LTR ERV1 366 403 0 4535 141 12 3 chr1 81652829 81653566 -200540098 + L1PA16 LINE L1 5414 6157 -9 21 36 0 0 chr1 81654261 81654289 -200539375 + AT_rich Low_complexity Low_complexity 1 28 0 320 343 79 7 chr1 81655539 81655679 -200537985 - L2 LINE L2 -1 3271 3122 298 336 35 63 chr1 81655790 81655971 -200537693 - MIR SINE MIR -63 145 3 1712 200 0 0 chr1 81656092 81656397 -200537267 - AluJb SINE Alu -7 305 1 21 36 0 0 chr1 81656677 81656705 -200536959 + AT_rich Low_complexity Low_complexity 1 28 0 356 349 46 0 chr1 81656710 81656862 -200536802 + MIR SINE MIR 3 161 -101 191 427 0 11 chr1 81656984 81657073 -200536591 - MIR SINE MIR -77 131 44 1548 245 45 47 chr1 81657441 81657947 -200535717 - MLT1D LTR MaLR 0 505 1 284 172 0 16 chr1 81658198 81658262 -200535402 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 30 0 0 0 chr1 81658498 81658528 -200535136 + AT_rich Low_complexity Low_complexity 1 30 0 2134 102 3 0 chr1 81658528 81658813 -200534851 - AluSx SINE Alu -26 286 1 188 233 136 48 chr1 81659679 81659782 -200533882 - L3 LINE CR1 -694 883 772 213 65 0 0 chr1 81660154 81660185 -200533479 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 25 0 0 0 chr1 81660880 81660905 -200532759 + AT_rich Low_complexity Low_complexity 1 25 0 211 273 76 30 chr1 81661026 81661092 -200532572 - MIR SINE MIR -161 101 33 25 31 0 0 chr1 81661629 81661661 -200532003 + AT_rich Low_complexity Low_complexity 1 32 0 1984 113 0 11 chr1 81661869 81662152 -200531512 + AluSq SINE Alu 1 280 -33 243 61 0 0 chr1 81662152 81662185 -200531479 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2298 35 42 7 chr1 81662910 81663197 -200530467 + AluY SINE Alu 4 300 -11 2591 58 0 0 chr1 81663335 81663645 -200530019 + AluY SINE Alu 2 311 0 262 374 25 37 chr1 81665920 81666083 -200527581 + L2 LINE L2 3095 3255 -17 23 33 0 0 chr1 81666529 81666559 -200527105 + AT_rich Low_complexity Low_complexity 1 30 0 1751 116 14 205 chr1 81666761 81667103 -200526561 + Tigger2 DNA MER2_type 1 406 -2312 279 0 0 0 chr1 81667103 81667134 -200526530 + (TA)n Simple_repeat Simple_repeat 2 32 0 1751 116 14 205 chr1 81667134 81667337 -200526327 + Tigger2 DNA MER2_type 406 2718 0 766 296 43 56 chr1 81667337 81667822 -200525842 - LTR33A LTR ERVL -44 479 1 280 308 48 10 chr1 81668483 81668587 -200525077 - L2 LINE L2 -6 3307 3200 317 211 157 103 chr1 81668638 81668842 -200524822 + MER20 DNA MER1_type 1 215 -4 1245 204 46 77 chr1 81668909 81669297 -200524367 - MLT1D LTR MaLR 0 505 130 1203 150 162 36 chr1 81669303 81669556 -200524108 - AluJb SINE Alu -7 305 21 316 241 12 24 chr1 81669589 81669672 -200523992 - MLT1D LTR MaLR -423 82 1 224 329 13 0 chr1 81669883 81669959 -200523705 + L2 LINE L2 2376 2452 -862 198 0 0 0 chr1 81670479 81670501 -200523163 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 256 245 0 19 chr1 81670624 81670677 -200522987 + Charlie4 DNA MER1_type 1892 1943 -18 1312 183 3 62 chr1 81673097 81673428 -200520236 + AluJo SINE Alu 1 313 0 231 167 0 0 chr1 81673428 81673470 -200520194 + (CA)n Simple_repeat Simple_repeat 1 42 0 249 311 0 0 chr1 81673495 81673585 -200520079 - L1MC4 LINE L1 -1339 6703 6614 285 210 0 0 chr1 81673591 81673653 -200520011 + (TA)n Simple_repeat Simple_repeat 2 63 0 248 259 47 0 chr1 81673654 81673739 -200519925 + L1MC4 LINE L1 6615 6703 -1339 * 254 303 0 0 chr1 81673682 81673771 -200519893 - L1MC4 LINE L1 -1340 6702 6614 253 311 0 0 chr1 81673783 81673873 -200519791 - L1MC4 LINE L1 -1339 6703 6614 * 261 303 0 0 chr1 81673866 81673955 -200519709 + L1MC4 LINE L1 6615 6703 -1339 229 326 0 0 chr1 81673877 81673966 -200519698 - L1MC4 LINE L1 -1339 6703 6615 * 369 197 0 0 chr1 81673967 81674043 -200519621 + (TA)n Simple_repeat Simple_repeat 2 77 0 268 250 0 22 chr1 81674043 81674135 -200519529 + L1MC4 LINE L1 6614 6703 -1339 222 150 0 0 chr1 81674139 81674179 -200519485 + (TA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr1 81675742 81675767 -200517897 + AT_rich Low_complexity Low_complexity 1 25 0 1226 307 31 14 chr1 81676287 81676707 -200516957 - LTR16A LTR ERVL -9 441 15 1865 208 39 8 chr1 81676986 81677370 -200516294 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr1 81677591 81677613 -200516051 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 81677795 81677838 -200515826 + AT_rich Low_complexity Low_complexity 1 43 0 181 121 0 52 chr1 81677875 81677933 -200515731 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 265 373 93 6 chr1 81677934 81678095 -200515569 - MIR3 SINE MIR -27 181 7 180 111 0 0 chr1 81680421 81680448 -200513216 + (TG)n Simple_repeat Simple_repeat 2 28 0 296 82 0 20 chr1 81681119 81681168 -200512496 + (TG)n Simple_repeat Simple_repeat 2 49 0 1837 156 0 0 chr1 81681383 81681700 -200511964 - AluSx SINE Alu 0 317 1 183 80 0 0 chr1 81683968 81683993 -200509671 + (CA)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr1 81684013 81684033 -200509631 + (T)n Simple_repeat Simple_repeat 1 20 0 858 304 82 19 chr1 81684439 81684839 -200508825 + L2 LINE L2 2608 3033 -280 322 245 152 53 chr1 81684886 81685037 -200508627 + L2 LINE L2 3148 3313 0 586 255 27 0 chr1 81685414 81685563 -200508101 - MIR SINE MIR -24 238 86 261 0 0 0 chr1 81687086 81687115 -200506549 + (TA)n Simple_repeat Simple_repeat 2 30 0 2770 0 0 3 chr1 81687129 81687434 -200506230 - AluYa5 SINE Alu -7 304 1 834 117 0 17 chr1 81687444 81687564 -200506100 - FRAM SINE Alu -24 152 35 219 114 0 0 chr1 81687595 81687630 -200506034 + (TA)n Simple_repeat Simple_repeat 2 36 0 241 152 0 0 chr1 81687630 81687676 -200505988 + LTR66 LTR ERVL 394 439 -171 241 152 0 0 chr1 81687690 81687736 -200505928 + LTR66 LTR ERVL 394 439 -171 183 229 9 19 chr1 81687737 81687842 -200505822 + (TA)n Simple_repeat Simple_repeat 1 104 0 222 273 7 14 chr1 81687855 81687998 -200505666 + (TA)n Simple_repeat Simple_repeat 1 142 0 274 276 37 60 chr1 81688387 81688521 -200505143 - MIR SINE MIR -1 261 131 614 333 49 0 chr1 81689771 81689975 -200503689 + MIR SINE MIR 49 262 0 1102 137 4 122 chr1 81690678 81690933 -200502731 - AluJo SINE Alu -13 299 75 1066 247 94 19 chr1 81690944 81691467 -200502197 - Charlie2 DNA MER1_type -16 2846 2285 1293 169 48 40 chr1 81691470 81691719 -200501945 + AluJb SINE Alu 31 281 -31 402 21 0 0 chr1 81691719 81691766 -200501898 + (CA)n Simple_repeat Simple_repeat 1 47 0 201 134 30 15 chr1 81691767 81691834 -200501830 + (TA)n Simple_repeat Simple_repeat 1 68 0 565 291 40 34 chr1 81691916 81692212 -200501452 - Charlie2 DNA MER1_type -675 2187 1890 526 300 120 28 chr1 81692234 81692517 -200501147 - Charlie2 DNA MER1_type -2539 323 15 29 0 0 0 chr1 81692968 81692997 -200500667 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 81693131 81693153 -200500511 + (GA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 81693249 81693271 -200500393 + AT_rich Low_complexity Low_complexity 1 22 0 254 267 80 67 chr1 81693687 81693837 -200499827 + MIR SINE MIR 30 181 -81 238 322 41 101 chr1 81693874 81694141 -200499523 + L2 LINE L2 3014 3264 -8 23 0 0 0 chr1 81696214 81696237 -200497427 + AT_rich Low_complexity Low_complexity 1 23 0 12719 151 61 12 chr1 81696322 81698626 -200495038 + Tigger1 DNA MER2_type 1 2417 -1 244 297 34 61 chr1 81699065 81699213 -200494451 - MIR SINE MIR -31 231 88 245 261 0 31 chr1 81699860 81699925 -200493739 + L3 LINE CR1 916 978 -599 336 276 0 0 chr1 81700850 81700926 -200492738 + L2 LINE L2 3197 3272 0 237 333 111 11 chr1 81701435 81701525 -200492139 + MIR SINE MIR 43 141 -67 319 269 19 9 chr1 81701629 81701737 -200491927 + MER103 DNA DNA 47 155 -11 21 0 0 0 chr1 81703161 81703182 -200490482 + AT_rich Low_complexity Low_complexity 1 21 0 1993 98 34 24 chr1 81703308 81703603 -200490061 + AluSg SINE Alu 1 298 -12 181 320 13 13 chr1 81705938 81706016 -200487648 + L3 LINE CR1 632 709 -868 326 369 44 0 chr1 81706272 81706432 -200487232 + MIR SINE MIR 35 201 -61 391 307 96 12 chr1 81706439 81706605 -200487059 + MIR SINE MIR 18 197 -65 225 207 0 35 chr1 81707479 81707537 -200486127 - MER5B DNA MER1_type 0 178 123 316 250 119 30 chr1 81708023 81708226 -200485438 - L1MC/D LINE L1 -469 5652 5536 21 0 0 0 chr1 81708242 81708263 -200485401 + AT_rich Low_complexity Low_complexity 1 21 0 1322 267 97 93 chr1 81708784 81709364 -200484300 + MLT1G LTR MaLR 1 577 -13 334 304 28 33 chr1 81709558 81709739 -200483925 + MLT1L LTR MaLR 108 287 -328 357 267 133 0 chr1 81713049 81713154 -200480510 - L2 LINE L2 -1 3312 3194 2494 78 0 0 chr1 81713641 81713949 -200479715 - AluSq SINE Alu -5 308 1 293 335 73 30 chr1 81714687 81715037 -200478627 - L2 LINE L2 -181 3091 2689 1648 154 25 14 chr1 81715056 81715336 -200478328 + AluSx SINE Alu 14 296 -16 963 208 108 94 chr1 81715553 81715990 -200477674 + MLT1C LTR MaLR 17 459 -8 419 293 43 37 chr1 81716023 81716187 -200477477 + MIR SINE MIR 92 256 -6 1913 44 0 0 chr1 81717749 81717978 -200475686 + AluY SINE Alu 79 307 -4 498 245 6 57 chr1 81717978 81718137 -200475527 + MLT1C LTR MaLR 315 465 -2 22 56 0 0 chr1 81718241 81718277 -200475387 + AT_rich Low_complexity Low_complexity 1 36 0 232 141 47 16 chr1 81718507 81718571 -200475093 + T-rich Low_complexity Low_complexity 3 68 0 22 80 0 0 chr1 81719111 81719161 -200474503 + AT_rich Low_complexity Low_complexity 1 50 0 283 338 75 30 chr1 81720333 81720466 -200473198 + MIR3 SINE MIR 46 184 -24 1938 130 0 11 chr1 81721677 81722011 -200471653 + AluSx SINE Alu 1 331 0 264 314 0 0 chr1 81722383 81722488 -200471176 + A-rich Low_complexity Low_complexity 1 105 0 5439 119 12 10 chr1 81723152 81724014 -200469650 + L1PA13 LINE L1 5301 6163 0 295 332 58 27 chr1 81724207 81724499 -200469165 + HAL1 LINE L1 63 363 -2144 484 225 183 6 chr1 81724722 81724891 -200468773 + HAL1 LINE L1 2309 2507 0 229 268 71 0 chr1 81724997 81725053 -200468611 - L2 LINE L2 -8 3305 3246 196 345 0 0 chr1 81727218 81727276 -200466388 + L2 LINE L2 3205 3262 -10 21 82 0 0 chr1 81727677 81727726 -200465938 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr1 81728910 81728940 -200464724 + AT_rich Low_complexity Low_complexity 1 30 0 813 126 25 0 chr1 81728942 81729061 -200464603 - AluJb SINE Alu -190 122 1 798 272 65 8 chr1 81729517 81729763 -200463901 - MIR SINE MIR 0 262 3 435 328 198 0 chr1 81730010 81730202 -200463462 - MIR SINE MIR -30 232 3 2476 15 0 0 chr1 81732930 81733204 -200460460 + AluYb8 SINE Alu 39 312 -6 225 0 0 0 chr1 81733558 81733583 -200460081 + (A)n Simple_repeat Simple_repeat 1 25 0 203 184 0 0 chr1 81735514 81735552 -200458112 + (TA)n Simple_repeat Simple_repeat 2 39 0 184 284 149 0 chr1 81736072 81736146 -200457518 + L2 LINE L2 2901 2985 -287 1879 117 7 18 chr1 81736415 81736725 -200456939 - AluSx SINE Alu 0 309 3 21 36 0 0 chr1 81736899 81736927 -200456737 + AT_rich Low_complexity Low_complexity 1 28 0 1197 227 33 3 chr1 81737049 81737353 -200456311 - MER33 DNA MER1_type -2 322 10 23 0 0 0 chr1 81738180 81738203 -200455461 + AT_rich Low_complexity Low_complexity 1 23 0 347 361 93 6 chr1 81738299 81738482 -200455182 - MIR SINE MIR -50 212 14 2384 77 0 0 chr1 81738880 81739191 -200454473 + AluY SINE Alu 1 311 0 180 0 0 0 chr1 81739630 81739650 -200454014 + (A)n Simple_repeat Simple_repeat 1 20 0 206 350 113 41 chr1 81741006 81741297 -200452367 + L2 LINE L2 1275 1586 -1728 214 340 78 10 chr1 81742214 81742317 -200451347 + L2 LINE L2 3197 3306 -7 463 293 61 0 chr1 81742771 81742935 -200450729 + MIR SINE MIR 86 259 -3 266 212 33 54 chr1 81743329 81743513 -200450151 + (TA)n Simple_repeat Simple_repeat 1 180 0 217 305 0 0 chr1 81743600 81743659 -200450005 + L2 LINE L2 3255 3313 0 459 52 0 0 chr1 81744266 81744324 -200449340 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr1 81745147 81745176 -200448488 + AT_rich Low_complexity Low_complexity 1 29 0 3288 140 9 17 chr1 81745460 81745989 -200447675 + MER61E LTR ERV1 1 525 -44 290 302 0 0 chr1 81746007 81746070 -200447594 + MER5A DNA MER1_type 43 105 -84 24 53 0 0 chr1 81746943 81746981 -200446683 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 81748471 81748495 -200445169 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr1 81748780 81748813 -200444851 + AT_rich Low_complexity Low_complexity 1 33 0 197 250 13 0 chr1 81748818 81748894 -200444770 + (TA)n Simple_repeat Simple_repeat 1 77 0 1525 156 91 0 chr1 81748943 81749218 -200444446 - AluSx SINE Alu -12 300 1 23 0 0 0 chr1 81749331 81749354 -200444310 + AT_rich Low_complexity Low_complexity 1 23 0 293 256 61 0 chr1 81752800 81752882 -200440782 - MIR SINE MIR -106 156 70 447 302 57 0 chr1 81753088 81753247 -200440417 + MIR SINE MIR 94 261 -1 188 65 0 32 chr1 81753634 81753665 -200439999 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr1 81754124 81754145 -200439519 + AT_rich Low_complexity Low_complexity 1 21 0 254 339 14 124 chr1 81756317 81756535 -200437129 - L2 LINE L2 -86 3186 2993 1448 197 3 27 chr1 81756986 81757286 -200436378 + MER101B LTR ERV1 1 293 -277 638 306 13 34 chr1 81757264 81757499 -200436165 + MER101 LTR ERV1 216 445 -29 * 312 296 45 0 chr1 81757530 81757618 -200436046 - L1MC4 LINE L1 -1338 6704 6613 1820 199 127 32 chr1 81757644 81758181 -200435483 - LTR48B LTR ERV1 0 644 57 255 31 0 0 chr1 81758695 81758727 -200434937 + (A)n Simple_repeat Simple_repeat 1 32 0 255 31 0 0 chr1 81759313 81759345 -200434319 + (A)n Simple_repeat Simple_repeat 1 32 0 304 242 11 21 chr1 81759393 81759488 -200434176 - MER103 DNA DNA -55 111 18 227 314 203 24 chr1 81759549 81759756 -200433908 - MIR SINE MIR -14 248 5 665 259 0 0 chr1 81760879 81761060 -200432604 + AluJb SINE Alu 137 317 0 810 68 0 0 chr1 81761070 81761173 -200432491 + LTR14B LTR ERVK 11 113 -495 453 335 52 5 chr1 81761620 81761811 -200431853 - MIR SINE MIR -55 207 8 211 122 41 0 chr1 81762431 81762480 -200431184 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 261 0 0 0 chr1 81762482 81762511 -200431153 + (TG)n Simple_repeat Simple_repeat 2 30 0 230 310 168 26 chr1 81762739 81762852 -200430812 + L2 LINE L2 3185 3313 0 454 271 8 0 chr1 81763318 81763440 -200430224 + L2 LINE L2 3190 3312 -1 502 275 7 14 chr1 81763558 81763696 -200429968 - L2 LINE L2 -12 3301 3165 191 315 0 19 chr1 81763827 81763881 -200429783 + MER5B DNA MER1_type 106 158 -20 627 320 109 34 chr1 81764007 81764510 -200429154 - L2 LINE L2 -352 2962 2422 239 298 97 24 chr1 81765240 81765364 -200428300 - MIR SINE MIR -12 250 118 338 305 92 49 chr1 81765838 81767207 -200426457 + L1M4 LINE L1 2179 3488 -2658 2477 65 0 0 chr1 81767207 81767517 -200426147 + AluY SINE Alu 1 310 -1 338 305 92 49 chr1 81767517 81767614 -200426050 + L1M4 LINE L1 3488 3579 -2567 279 0 0 0 chr1 81767614 81767645 -200426019 + (TA)n Simple_repeat Simple_repeat 1 31 0 338 305 92 49 chr1 81767645 81767671 -200425993 + L1M4 LINE L1 3579 3736 -2410 341 306 40 52 chr1 81767720 81767893 -200425771 + L1M4 LINE L1 3853 4023 -2123 308 356 80 10 chr1 81767931 81768220 -200425444 + L1M4 LINE L1 4000 4308 -1838 21 36 0 0 chr1 81769790 81769818 -200423846 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 81770779 81770803 -200422861 + AT_rich Low_complexity Low_complexity 1 24 0 2814 10 0 0 chr1 81771171 81771481 -200422183 + AluYa5 SINE Alu 1 310 -1 21 57 0 0 chr1 81771787 81771822 -200421842 + AT_rich Low_complexity Low_complexity 1 35 0 195 345 68 41 chr1 81771895 81772115 -200421549 + L2 LINE L2 1798 2023 -1291 185 0 40 0 chr1 81772241 81772266 -200421398 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2147 93 0 3 chr1 81772270 81772560 -200421104 - AluY SINE Alu -22 289 1 42 0 0 0 chr1 81772871 81772913 -200420751 + AT_rich Low_complexity Low_complexity 1 42 0 272 302 35 43 chr1 81773010 81773126 -200420538 + L2 LINE L2 2188 2302 -1012 * 327 270 157 19 chr1 81773121 81773280 -200420384 + MER5A DNA MER1_type 9 189 0 246 355 106 82 chr1 81773847 81774272 -200419392 + L2 LINE L2 2836 3270 -2 846 145 8 8 chr1 81774533 81774664 -200419000 + FLAM_C SINE Alu 1 131 -2 1058 127 0 66 chr1 81775529 81775710 -200417954 - AluSg/x SINE Alu -11 301 133 727 119 0 90 chr1 81776303 81776437 -200417227 - AluSq SINE Alu -59 254 133 214 273 42 84 chr1 81777657 81777800 -200415864 - MIR3 SINE MIR -2 206 70 202 293 211 23 chr1 81777811 81777944 -200415720 + L3 LINE CR1 1309 1466 -111 359 280 85 48 chr1 81777975 81778164 -200415500 - MIR SINE MIR -44 218 23 216 223 96 21 chr1 81778199 81778293 -200415371 + L3 LINE CR1 1470 1570 -7 645 316 23 0 chr1 81778794 81779050 -200414614 + MIR SINE MIR 1 262 0 1407 225 59 83 chr1 81780818 81781445 -200412219 + LTR9 LTR ERV1 1 612 0 190 339 115 23 chr1 81781478 81781608 -200412056 - MIR SINE MIR -96 166 25 355 332 47 16 chr1 81781789 81781983 -200411681 - MIR SINE MIR -29 233 32 2343 88 0 0 chr1 81782436 81782733 -200410931 + AluSx SINE Alu 1 297 -15 549 286 168 5 chr1 81783358 81783561 -200410103 - MIR SINE MIR -7 255 20 204 445 0 19 chr1 81785066 81785275 -200408389 - L2 LINE L2 -234 3038 2834 234 0 0 0 chr1 81786642 81786668 -200406996 + (A)n Simple_repeat Simple_repeat 1 26 0 227 155 63 7 chr1 81787855 81787997 -200405667 + (TA)n Simple_repeat Simple_repeat 2 151 0 260 213 32 11 chr1 81788010 81788104 -200405560 + (TA)n Simple_repeat Simple_repeat 2 97 0 274 308 45 19 chr1 81789278 81789434 -200404230 + LTR33A LTR ERVL 364 523 0 27 0 0 0 chr1 81789465 81789492 -200404172 + AT_rich Low_complexity Low_complexity 1 27 0 272 240 0 40 chr1 81790190 81790265 -200403399 + MIR SINE MIR 191 262 0 2134 140 22 25 chr1 81791427 81791791 -200401873 + THE1B LTR MaLR 2 364 0 23 0 0 0 chr1 81792413 81792436 -200401228 + AT_rich Low_complexity Low_complexity 1 23 0 29 70 0 0 chr1 81793491 81793548 -200400116 + AT_rich Low_complexity Low_complexity 1 57 0 248 287 0 69 chr1 81794326 81794413 -200399251 - MIR3 SINE MIR -11 197 117 2591 29 7 3 chr1 81794490 81794799 -200398865 - AluY SINE Alu -1 310 1 235 263 61 71 chr1 81795360 81795459 -200398205 - L2 LINE L2 -208 3105 3008 1120 163 27 81 chr1 81795460 81795718 -200397946 + AluJo SINE Alu 45 288 -24 183 424 76 0 chr1 81796067 81796185 -200397479 + L2 LINE L2 3133 3259 -13 25 65 0 0 chr1 81796522 81796568 -200397096 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr1 81796681 81796717 -200396947 + AT_rich Low_complexity Low_complexity 1 36 0 1438 273 46 0 chr1 81797003 81797351 -200396313 + MLT1F LTR MaLR 1 364 -178 304 368 44 18 chr1 81797907 81798247 -200395417 + Charlie4 DNA MER1_type 558 906 -1055 242 360 42 88 chr1 81799301 81799562 -200394102 + L2 LINE L2 3024 3272 0 23 54 0 0 chr1 81800231 81800268 -200393396 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr1 81800865 81800887 -200392777 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 81801470 81801513 -200392151 + AT_rich Low_complexity Low_complexity 1 43 0 33 0 0 0 chr1 81802156 81802189 -200391475 + AT_rich Low_complexity Low_complexity 1 33 0 309 352 9 9 chr1 81802240 81802370 -200391294 + MIR SINE MIR 25 153 -66 1447 202 85 35 chr1 81804008 81804374 -200389290 - MLT1B LTR MaLR 0 390 7 22 56 0 0 chr1 81806147 81806183 -200387481 + AT_rich Low_complexity Low_complexity 1 36 0 290 348 104 0 chr1 81807848 81807963 -200385701 + L2 LINE L2 3141 3267 -5 181 274 137 0 chr1 81808831 81808882 -200384782 + L2 LINE L2 3168 3225 -47 23 33 0 0 chr1 81809528 81809558 -200384106 + AT_rich Low_complexity Low_complexity 1 30 0 205 218 26 115 chr1 81809613 81809691 -200383973 - MIR3 SINE MIR -54 154 84 314 145 66 26 chr1 81809694 81809770 -200383894 - MADE1 DNA Mariner 0 80 2 409 96 82 0 chr1 81809814 81809887 -200383777 - MADE1 DNA Mariner 0 80 2 313 244 48 86 chr1 81811148 81811340 -200382324 - MIR SINE MIR -50 212 23 180 111 0 0 chr1 81811840 81811867 -200381797 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 407 358 18 22 chr1 81812120 81812349 -200381315 - MIR SINE MIR -20 242 15 540 259 14 14 chr1 81812534 81812677 -200380987 - MIR SINE MIR -113 149 7 1623 198 45 13 chr1 81812838 81813216 -200380448 + MLT1B LTR MaLR 1 390 0 2091 172 98 2 chr1 81814471 81814879 -200378785 + LTR45B LTR ERV1 3 449 -40 1623 174 7 24 chr1 81815501 81815638 -200378026 + AluJb SINE Alu 1 139 -173 198 71 0 0 chr1 81815638 81815666 -200377998 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1623 174 7 24 chr1 81815666 81815826 -200377838 + AluJb SINE Alu 139 293 -19 32 67 0 0 chr1 81816461 81816521 -200377143 + AT_rich Low_complexity Low_complexity 1 60 0 484 275 81 28 chr1 81817481 81817692 -200375972 + L1MEd LINE L1 863 1084 -5035 215 370 65 11 chr1 81818646 81818738 -200374926 + L2 LINE L2 3141 3237 -35 1093 317 73 10 chr1 81819352 81819749 -200373915 - LTR16A LTR ERVL -13 437 16 23 33 0 0 chr1 81819937 81819967 -200373697 + AT_rich Low_complexity Low_complexity 1 30 0 554 195 79 18 chr1 81820391 81820555 -200373109 + MER104 DNA Tc2 6 179 -1 23 0 0 0 chr1 81821047 81821070 -200372594 + AT_rich Low_complexity Low_complexity 1 23 0 229 328 112 0 chr1 81822297 81822413 -200371251 + MIR SINE MIR 80 208 -54 1757 199 46 6 chr1 81822513 81822864 -200370800 + MLT1A1 LTR MaLR 1 365 0 342 215 83 49 chr1 81822884 81823028 -200370636 + MLT2B2 LTR ERVL 317 465 -50 201 147 0 0 chr1 81823034 81823068 -200370596 + (TG)n Simple_repeat Simple_repeat 2 35 0 245 255 0 0 chr1 81823068 81823115 -200370549 + (CA)n Simple_repeat Simple_repeat 2 48 0 325 154 0 0 chr1 81823115 81823167 -200370497 + MLT2C2 LTR ERVL 413 464 0 975 128 0 13 chr1 81823265 81823414 -200370250 - AluSc SINE Alu -7 302 156 227 225 0 0 chr1 81823559 81823599 -200370065 + MLT1J LTR MaLR 468 507 -4 1294 206 64 3 chr1 81823733 81823852 -200369812 + AluJb SINE Alu 2 112 -200 396 0 0 0 chr1 81823852 81823896 -200369768 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1294 206 64 3 chr1 81823896 81824058 -200369606 + AluJb SINE Alu 112 300 -12 241 164 15 30 chr1 81824814 81824867 -200368797 + (TA)n Simple_repeat Simple_repeat 2 55 -12 2240 106 3 3 chr1 81824867 81825170 -200368494 - AluSq SINE Alu -10 303 1 241 164 15 30 chr1 81825170 81825183 -200368481 + (TA)n Simple_repeat Simple_repeat 55 67 0 268 24 49 0 chr1 81825317 81825358 -200368306 + (TA)n Simple_repeat Simple_repeat 2 44 0 29 47 0 0 chr1 81826069 81826112 -200367552 + AT_rich Low_complexity Low_complexity 1 43 0 424 283 14 7 chr1 81826916 81827054 -200366610 + MIR SINE MIR 111 249 -13 276 30 0 0 chr1 81827150 81827183 -200366481 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 433 301 40 68 chr1 81827726 81827902 -200365762 + L2 LINE L2 3102 3272 0 358 350 8 8 chr1 81827914 81828037 -200365627 - MIR SINE MIR -66 142 20 192 111 0 0 chr1 81828923 81828959 -200364705 + (A)n Simple_repeat Simple_repeat 1 36 0 354 237 0 0 chr1 81829453 81829571 -200364093 + CT-rich Low_complexity Low_complexity 4 121 0 869 244 0 0 chr1 81829582 81829754 -200363910 - FAM SINE Alu -3 172 1 1764 223 30 20 chr1 81829953 81830392 -200363272 - L1MC1 LINE L1 0 6333 5891 641 275 64 61 chr1 81830555 81830897 -200362767 + L2 LINE L2 2971 3313 0 221 250 0 0 chr1 81831436 81831484 -200362180 + (CATATA)n Simple_repeat Simple_repeat 5 52 0 21 0 0 0 chr1 81831854 81831875 -200361789 + AT_rich Low_complexity Low_complexity 1 21 0 2221 109 3 0 chr1 81831919 81832221 -200361443 + AluSx SINE Alu 1 303 -9 33 66 0 0 chr1 81833001 81833062 -200360602 + AT_rich Low_complexity Low_complexity 1 61 0 2023 99 3 46 chr1 81833368 81833671 -200359993 + AluSg SINE Alu 1 290 -20 189 94 0 0 chr1 81833836 81833868 -200359796 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 690 253 6 44 chr1 81834115 81834297 -200359367 + MER5A DNA MER1_type 14 188 -1 210 216 227 31 chr1 81834379 81834476 -200359188 - MIR SINE MIR -110 152 37 894 175 6 29 chr1 81834709 81834880 -200358784 - AluSg/x SINE Alu -9 301 135 283 200 31 0 chr1 81834989 81835054 -200358610 - MER5A DNA MER1_type -86 103 37 602 266 138 5 chr1 81835119 81835322 -200358342 + MIR SINE MIR 31 260 -2 23 54 0 0 chr1 81836247 81836284 -200357380 + AT_rich Low_complexity Low_complexity 1 37 0 297 346 58 19 chr1 81836648 81836804 -200356860 + MIR3 SINE MIR 36 197 -11 412 598 6 0 chr1 81837254 81837433 -200356231 + polypyrimidine Low_complexity Low_complexity 1 180 0 1458 202 108 17 chr1 81837715 81838066 -200355598 - MLT1B LTR MaLR -7 383 1 1631 191 3 7 chr1 81838645 81838943 -200354721 - AluJb SINE Alu -15 297 1 1975 161 0 0 chr1 81839042 81839347 -200354317 + AluSc SINE Alu 1 305 -4 222 279 63 42 chr1 81840310 81840406 -200353258 - L2 LINE L2 -254 3018 2923 1948 99 40 0 chr1 81842645 81842833 -200350831 - AluY SINE Alu 0 319 114 224 30 30 0 chr1 81842833 81842866 -200350798 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 99 40 0 chr1 81842866 81842985 -200350679 - AluY SINE Alu -205 114 1 557 298 115 14 chr1 81843140 81843348 -200350316 + MIR SINE MIR 4 232 -30 1393 272 110 45 chr1 81843486 81844214 -200349450 + MER110-int LTR ERV1 3869 4643 -4 1340 233 143 14 chr1 81844342 81844767 -200348897 + MER110 LTR ERV1 6 485 -6 31 68 0 0 chr1 81845031 81845090 -200348574 + AT_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr1 81845127 81845156 -200348508 + AT_rich Low_complexity Low_complexity 1 29 0 31 68 0 0 chr1 81845738 81845797 -200347867 + AT_rich Low_complexity Low_complexity 1 59 0 222 171 0 0 chr1 81845889 81845930 -200347734 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 1477 181 31 52 chr1 81846749 81847130 -200346534 - MLT1A2 LTR MaLR 0 374 2 21 36 0 0 chr1 81849948 81849976 -200343688 + AT_rich Low_complexity Low_complexity 1 28 0 2006 236 22 16 chr1 81850155 81850655 -200343009 + MLT1D LTR MaLR 3 505 0 22 56 0 0 chr1 81850803 81850839 -200342825 + AT_rich Low_complexity Low_complexity 1 36 0 273 298 61 30 chr1 81851136 81851267 -200342397 + L2 LINE L2 2646 2780 -534 589 185 0 25 chr1 81851427 81851546 -200342118 + FLAM_C SINE Alu 5 120 -23 234 0 0 0 chr1 81851549 81851575 -200342089 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr1 81853646 81853669 -200339995 + AT_rich Low_complexity Low_complexity 1 23 0 215 250 0 19 chr1 81853725 81853777 -200339887 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 234 247 0 0 chr1 81853793 81853870 -200339794 + (TA)n Simple_repeat Simple_repeat 1 77 0 26 0 0 0 chr1 81854542 81854568 -200339096 + AT_rich Low_complexity Low_complexity 1 26 0 519 56 0 0 chr1 81856168 81856239 -200337425 + L1HS LINE L1 6085 6155 0 351 179 0 0 chr1 81857068 81857135 -200336529 + (CA)n Simple_repeat Simple_repeat 2 68 0 366 361 0 0 chr1 81857185 81857315 -200336349 + MIR SINE MIR 86 215 -47 26 0 0 0 chr1 81857331 81857357 -200336307 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chr1 81859426 81859487 -200334177 + AT_rich Low_complexity Low_complexity 1 61 0 207 69 0 0 chr1 81859515 81859544 -200334120 + (TG)n Simple_repeat Simple_repeat 2 30 0 1503 150 101 101 chr1 81860077 81860443 -200333221 + MLT2D LTR ERVL 1 366 -48 268 31 31 77 chr1 81860448 81860513 -200333151 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 225 0 0 0 chr1 81863292 81863317 -200330347 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 239 336 35 26 chr1 81864221 81864337 -200329327 + MIR SINE MIR 21 137 -125 363 285 57 6 chr1 81864601 81864759 -200328905 + LTR67 LTR ERVL 387 552 -5 203 291 134 35 chr1 81865134 81865306 -200328358 - MIR SINE MIR -10 252 64 868 208 71 47 chr1 81865613 81865825 -200327839 + MER20 DNA MER1_type 2 218 -1 2020 29 0 0 chr1 81866509 81866749 -200326915 - L1PA2 LINE L1 -1 6154 5915 253 209 58 12 chr1 81868511 81868597 -200325067 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 22 0 0 0 chr1 81869576 81869598 -200324066 + AT_rich Low_complexity Low_complexity 1 22 0 218 340 41 0 chr1 81871810 81871907 -200321757 - MIR SINE MIR -77 131 31 366 23 0 0 chr1 81872073 81872116 -200321548 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 179 0 0 chr1 81872118 81872157 -200321507 + GA-rich Low_complexity Low_complexity 2 40 0 1418 264 72 7 chr1 81872608 81873036 -200320628 - LTR40a LTR ERVL 0 519 64 2378 62 0 34 chr1 81873152 81873473 -200320191 + AluY SINE Alu 1 310 -1 25 0 0 0 chr1 81874615 81874640 -200319024 + AT_rich Low_complexity Low_complexity 1 25 0 1788 234 42 30 chr1 81874655 81875206 -200318458 + MLT2B1 LTR ERVL 1 520 0 893 318 29 13 chr1 81875714 81876094 -200317570 + L2 LINE L2 2408 2793 -521 1904 204 25 80 chr1 81876110 81876621 -200317043 + LTR42 LTR ERVL 1 483 -12 226 215 123 0 chr1 81876653 81876718 -200316946 + L2 LINE L2 2819 2891 -381 257 290 131 9 chr1 81876759 81876866 -200316798 + L2 LINE L2 3189 3308 -5 215 211 0 0 chr1 81876867 81876905 -200316759 + polypurine Low_complexity Low_complexity 2 39 0 1878 146 0 7 chr1 81877797 81878107 -200315557 + AluSx SINE Alu 1 308 0 182 36 0 36 chr1 81878462 81878490 -200315174 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 38 66 0 28 chr1 81879742 81879848 -200313816 + AT_rich Low_complexity Low_complexity 1 103 0 2379 66 13 0 chr1 81880185 81880486 -200313178 - AluY SINE Alu -6 305 1 2170 95 3 0 chr1 81880695 81881017 -200312647 - AluSp SINE Alu 0 323 1 1821 288 74 55 chr1 81881149 81882391 -200311273 + L1MEc LINE L1 120 1405 -4991 6362 68 29 1 chr1 81882391 81883445 -200310219 + L1PA7 LINE L1 5077 6154 0 1821 288 74 55 chr1 81883445 81883883 -200309781 + L1MEc LINE L1 1405 1833 -4563 2416 246 59 70 chr1 81883955 81885450 -200308214 + L1MEc LINE L1 2119 3547 -2668 340 262 27 101 chr1 81885451 81885689 -200307975 + L1ME1 LINE L1 5899 6086 -80 291 28 0 0 chr1 81886047 81886083 -200307581 + (TTG)n Simple_repeat Simple_repeat 3 38 0 1174 236 131 14 chr1 81886106 81886457 -200307207 - MSTD LTR MaLR 0 396 5 25 31 0 0 chr1 81886623 81886655 -200307009 + AT_rich Low_complexity Low_complexity 1 32 0 497 16 16 0 chr1 81888347 81888409 -200305255 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 26 30 0 0 chr1 81889374 81889407 -200304257 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr1 81889551 81889585 -200304079 + AT_rich Low_complexity Low_complexity 1 34 0 394 27 27 40 chr1 81889695 81889770 -200303894 + (TA)n Simple_repeat Simple_repeat 2 75 0 184 213 138 50 chr1 81890066 81890146 -200303518 - L2 LINE L2 -1 3312 3226 260 244 205 0 chr1 81891978 81892056 -200301608 + Tigger4(Zombi) DNA MER2_type 1 94 -2637 * 3167 156 20 4 chr1 81892046 81892597 -200301067 + Tigger4(Zombi) DNA MER2_type 2171 2730 -1 25 31 0 0 chr1 81892962 81892994 -200300670 + AT_rich Low_complexity Low_complexity 1 32 0 2442 117 3 0 chr1 81893012 81893364 -200300300 - THE1A LTR MaLR -2 353 1 10118 104 63 6 chr1 81893364 81894859 -200298805 - THE1A-int LTR MaLR 0 1580 1 2618 87 0 6 chr1 81894861 81895216 -200298448 - THE1A LTR MaLR -2 353 1 2149 110 13 0 chr1 81895430 81895739 -200297925 + AluSp SINE Alu 1 313 0 206 245 0 0 chr1 81896812 81896865 -200296799 + A-rich Low_complexity Low_complexity 1 53 0 48 60 0 0 chr1 81897070 81897153 -200296511 + AT_rich Low_complexity Low_complexity 1 83 0 321 234 13 13 chr1 81897399 81897476 -200296188 + L1MEc LINE L1 4146 4222 -1993 271 303 131 32 chr1 81897629 81898228 -200295436 + L1M4 LINE L1 2389 3096 -3050 4089 135 31 24 chr1 81898228 81898971 -200294693 + L1PA16 LINE L1 5415 6162 -4 271 303 131 32 chr1 81898971 81899174 -200294490 + L1M4 LINE L1 3096 3277 -2869 306 362 84 45 chr1 81899467 81900088 -200293576 - L2 LINE L2 -1086 2228 1584 229 320 0 13 chr1 81901547 81901622 -200292042 + MIR SINE MIR 87 160 -102 252 0 0 0 chr1 81902772 81902800 -200290864 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1582 181 7 27 chr1 81902807 81903100 -200290564 - AluJo SINE Alu -25 287 1 674 255 99 0 chr1 81907222 81907414 -200286250 + MER20 DNA MER1_type 8 218 -1 23 0 0 0 chr1 81907470 81907493 -200286171 + AT_rich Low_complexity Low_complexity 1 23 0 1822 152 30 3 chr1 81907498 81907674 -200285990 - AluSx SINE Alu -1 311 122 189 0 0 0 chr1 81907674 81907695 -200285969 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1822 152 30 3 chr1 81907695 81907821 -200285843 - AluSx SINE Alu -190 122 1 591 75 21 43 chr1 81907977 81908071 -200285593 + AluSg/x SINE Alu 174 265 -44 293 47 23 0 chr1 81908076 81908119 -200285545 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr1 81908660 81908681 -200284983 + AT_rich Low_complexity Low_complexity 1 21 0 203 345 107 0 chr1 81908858 81908942 -200284722 - MIR SINE MIR -160 102 10 406 69 14 14 chr1 81909319 81909391 -200284273 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 35 0 0 0 chr1 81909919 81909954 -200283710 + AT_rich Low_complexity Low_complexity 1 35 0 3157 137 55 6 chr1 81911859 81912391 -200281273 + L1MA7 LINE L1 5440 5997 -294 357 215 54 0 chr1 81912398 81912491 -200281173 + L1MA7 LINE L1 6179 6276 -15 1812 131 34 30 chr1 81913636 81913933 -200279731 - AluSx SINE Alu -14 298 1 338 318 147 48 chr1 81914120 81914237 -200279427 + L3 LINE CR1 970 1074 -503 1734 150 3 38 chr1 81914237 81914557 -200279107 + AluJb SINE Alu 1 309 -3 338 318 147 48 chr1 81914557 81914794 -200278870 + L3 LINE CR1 1074 1359 -218 180 217 152 65 chr1 81915740 81915832 -200277832 + L2 LINE L2 3214 3313 0 528 261 195 27 chr1 81915880 81916137 -200277527 + L2 LINE L2 3008 3307 -6 1341 238 66 62 chr1 81916321 81916808 -200276856 - L1MCb LINE L1 -5196 849 361 24 32 0 0 chr1 81918042 81918073 -200275591 + AT_rich Low_complexity Low_complexity 1 31 0 1627 192 58 26 chr1 81918234 81918615 -200275049 - MLT1D LTR MaLR 0 505 113 1852 176 0 3 chr1 81918626 81918932 -200274732 - AluJb SINE Alu -2 310 6 2808 3 0 0 chr1 81918962 81919269 -200274395 - AluYa5 SINE Alu -4 307 1 226 169 70 84 chr1 81919270 81919341 -200274323 - MLT1D LTR MaLR -517 109 40 817 479 82 4 chr1 81919610 81919906 -200273758 + AluSg SINE Alu 6 321 0 2093 186 16 3 chr1 81920086 81920473 -200273191 - L1MC1 LINE L1 0 6333 5942 186 378 10 10 chr1 81920497 81920595 -200273069 - MIR SINE MIR -67 141 44 33 0 0 0 chr1 81920669 81920702 -200272962 + AT_rich Low_complexity Low_complexity 1 33 0 202 286 0 0 chr1 81920810 81920859 -200272805 + MIR SINE MIR 90 138 -124 1090 74 0 14 chr1 81920863 81921046 -200272618 - L1PA3 LINE L1 0 6155 5998 22 0 0 0 chr1 81921655 81921677 -200271987 + AT_rich Low_complexity Low_complexity 1 22 0 200 342 115 74 chr1 81922226 81922586 -200271078 - L2 LINE L2 -4 3268 2885 207 0 0 0 chr1 81922586 81922609 -200271055 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 200 342 115 74 chr1 81922609 81922692 -200270972 - L2 LINE L2 -387 2885 2807 308 119 0 0 chr1 81922872 81922914 -200270750 - 5S rRNA rRNA -79 42 1 417 292 175 12 chr1 81974302 81974473 -200219191 - MIR SINE MIR -61 201 3 258 381 128 34 chr1 81975870 81976198 -200217466 + L2 LINE L2 2911 3269 -3 30 45 0 0 chr1 81980197 81980241 -200213423 + AT_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr1 81980297 81980332 -200213332 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 81980593 81980622 -200213042 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 81980765 81980786 -200212878 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 81980905 81980927 -200212737 + AT_rich Low_complexity Low_complexity 1 22 0 1253 174 22 0 chr1 81982675 81982905 -200210759 + MER46A DNA MER2_type 2 236 0 1695 162 28 3 chr1 81983037 81983327 -200210337 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr1 81983941 81983963 -200209701 + AT_rich Low_complexity Low_complexity 1 22 0 613 269 100 87 chr1 81984625 81985083 -200208581 + MLT1J LTR MaLR 4 467 -44 983 200 0 5 chr1 81985612 81985812 -200207852 - L1MD3 LINE L1 -68 7927 7729 324 64 0 0 chr1 81985829 81985876 -200207788 + (GA)n Simple_repeat Simple_repeat 2 48 0 635 268 36 0 chr1 81985977 81986145 -200207519 - MIR SINE MIR -32 230 57 320 321 92 8 chr1 81986209 81986340 -200207324 + MIR3 SINE MIR 38 179 -29 4846 162 48 0 chr1 81986461 81987354 -200206310 + L1PA16 LINE L1 5232 6166 0 1230 281 33 82 chr1 81987687 81987991 -200205673 - HsTC2c DNA Tc2 -1258 640 323 263 48 0 24 chr1 81987991 81988033 -200205631 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 1230 281 33 82 chr1 81988033 81988401 -200205263 - HsTC2c DNA Tc2 -1575 323 1 3982 193 20 34 chr1 81988577 81989381 -200204283 + Tigger1 DNA MER2_type 1 793 -1625 * 8250 144 18 18 chr1 81989375 81990789 -200202875 + Tigger1 DNA MER2_type 1003 2417 -1 1398 161 16 96 chr1 81992327 81992650 -200201014 + AluJb SINE Alu 3 299 -13 244 370 80 36 chr1 81992651 81992789 -200200875 - L2 LINE L2 -13 3259 3116 222 284 68 0 chr1 81996451 81996525 -200197139 + MIR SINE MIR 116 194 -68 2310 222 139 19 chr1 81996783 81997627 -200196037 + Charlie1 DNA MER1_type 3 744 -2017 805 148 0 0 chr1 81997627 81997762 -200195902 + L1MA10 LINE L1 6199 6333 -1 2310 222 139 19 chr1 81997762 81997811 -200195853 + Charlie1 DNA MER1_type 744 2354 -407 1003 196 127 28 chr1 81998145 81998507 -200195157 + Charlie1 DNA MER1_type 2362 2759 -2 12857 99 15 5 chr1 82000345 82003056 -200190608 + L1PA8 LINE L1 3418 6149 -23 522 103 0 0 chr1 82003062 82003140 -200190524 + (TA)n Simple_repeat Simple_repeat 1 78 0 23 86 0 0 chr1 82003148 82003206 -200190458 + AT_rich Low_complexity Low_complexity 1 58 0 256 214 131 24 chr1 82003428 82003512 -200190152 + MIR SINE MIR 170 262 0 28 61 0 0 chr1 82003612 82003661 -200190003 + AT_rich Low_complexity Low_complexity 1 49 0 26 30 0 0 chr1 82004665 82004698 -200188966 + AT_rich Low_complexity Low_complexity 1 33 0 212 139 0 23 chr1 82007146 82007189 -200186475 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 21 0 0 0 chr1 82007445 82007466 -200186198 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 82007669 82007691 -200185973 + AT_rich Low_complexity Low_complexity 1 22 0 1097 263 105 33 chr1 82007701 82008130 -200185534 - MLT1C LTR MaLR 0 467 8 23 68 0 0 chr1 82008175 82008219 -200185445 + AT_rich Low_complexity Low_complexity 1 44 0 306 234 16 0 chr1 82008564 82008628 -200185036 + MLT1G LTR MaLR 1 65 -525 2143 240 114 28 chr1 82008679 82009357 -200184307 + L1M3e LINE L1 1348 2083 -4947 662 289 109 23 chr1 82009361 82009676 -200183988 + MLT1G LTR MaLR 53 384 -206 609 237 82 26 chr1 82009676 82009870 -200183794 + MER3 DNA MER1_type 2 206 -3 453 281 146 5 chr1 82009872 82010057 -200183607 + MLT1G LTR MaLR 379 589 -1 232 246 18 0 chr1 82011182 82011239 -200182425 - L2 LINE L2 -328 2985 2928 356 235 35 129 chr1 82011250 82011420 -200182244 - MIR SINE MIR -56 206 53 22 0 0 0 chr1 82011641 82011663 -200182001 + AT_rich Low_complexity Low_complexity 1 22 0 28 99 0 0 chr1 82012132 82012223 -200181441 + AT_rich Low_complexity Low_complexity 1 91 0 23 0 0 0 chr1 82012479 82012502 -200181162 + AT_rich Low_complexity Low_complexity 1 23 0 450 337 107 0 chr1 82013827 82014032 -200179632 + MIR SINE MIR 20 246 -16 773 254 76 0 chr1 82014605 82014841 -200178823 + MIR SINE MIR 9 262 0 1861 199 112 35 chr1 82014866 82015349 -200178315 + MLT2B1 LTR ERVL 1 520 0 200 158 18 0 chr1 82016077 82016134 -200177530 + (TATAA)n Simple_repeat Simple_repeat 1 58 0 54 62 0 0 chr1 82016178 82016274 -200177390 + AT_rich Low_complexity Low_complexity 1 96 0 22 0 0 0 chr1 82016299 82016321 -200177343 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 82017049 82017079 -200176585 + AT_rich Low_complexity Low_complexity 1 30 0 196 355 37 19 chr1 82017444 82017551 -200176113 - L3 LINE CR1 -802 775 667 617 306 36 0 chr1 82018082 82018278 -200175386 + MIR SINE MIR 15 217 -45 230 319 155 17 chr1 82018710 82018826 -200174838 + MER5A DNA MER1_type 18 149 -40 2131 96 10 10 chr1 82018828 82019120 -200174544 + AluSg SINE Alu 1 292 -18 28 0 0 0 chr1 82020026 82020054 -200173610 + AT_rich Low_complexity Low_complexity 1 28 0 3846 158 9 10 chr1 82020054 82020732 -200172932 - L1PA16 LINE L1 -12 6154 5478 2472 119 0 0 chr1 82020740 82021101 -200172563 - L1PA13 LINE L1 -9 6154 5794 3351 141 35 22 chr1 82021101 82021900 -200171764 + L1MB1 LINE L1 5064 5864 -325 244 250 17 0 chr1 82022475 82022535 -200171129 - L2 LINE L2 -556 2758 2698 3858 64 4 0 chr1 82022692 82023194 -200170470 + L1PA7 LINE L1 5649 6152 -2 22 80 0 0 chr1 82023792 82023842 -200169822 + AT_rich Low_complexity Low_complexity 1 50 0 700 197 36 7 chr1 82024103 82024240 -200169424 - MLT1A1 LTR MaLR -29 336 196 470 160 0 32 chr1 82024237 82024331 -200169333 - MLT1A1 LTR MaLR -273 92 2 * 350 340 107 19 chr1 82024530 82024736 -200168928 + MIR SINE MIR 30 253 -9 181 273 0 0 chr1 82025160 82025204 -200168460 - L2 LINE L2 -4 3268 3225 6689 154 56 14 chr1 82026665 82027914 -200165750 + HSMAR2 DNA Mariner 1 1302 0 240 247 82 75 chr1 82029103 82029249 -200164415 + L2 LINE L2 3161 3307 -6 580 318 96 0 chr1 82029395 82029634 -200164030 - MIR SINE MIR 0 262 1 25 31 0 0 chr1 82029805 82029837 -200163827 + AT_rich Low_complexity Low_complexity 1 32 0 339 160 0 40 chr1 82030072 82030147 -200163517 + MIR SINE MIR 118 189 -73 509 113 0 12 chr1 82030180 82030260 -200163404 + L1PA15 LINE L1 6085 6163 -2 201 300 0 0 chr1 82031159 82031269 -200162395 + (TA)n Simple_repeat Simple_repeat 2 111 0 2142 239 54 42 chr1 82031325 82031969 -200161695 + MER82 DNA MER2_type 1 652 -1 27 29 0 0 chr1 82032715 82032749 -200160915 + AT_rich Low_complexity Low_complexity 1 34 0 6059 187 29 4 chr1 82033414 82034545 -200159119 - MSTA-int LTR MaLR -492 1159 1 1913 210 54 10 chr1 82034545 82034954 -200158710 - MSTA LTR MaLR 0 428 2 2006 134 0 0 chr1 82035022 82035314 -200158350 - AluSx SINE Alu -20 292 1 369 0 0 0 chr1 82035332 82035373 -200158291 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1683 130 67 0 chr1 82035375 82035628 -200158036 - AluSx SINE Alu -31 281 12 1775 207 5 11 chr1 82035764 82036131 -200157533 + MLT1A1 LTR MaLR 1 365 0 872 163 179 67 chr1 82036724 82036964 -200156700 + MLT2C2 LTR ERVL 5 271 -193 241 213 0 0 chr1 82037042 82037089 -200156575 + MLT2C2 LTR ERVL 418 464 0 1788 173 62 0 chr1 82038205 82038528 -200155136 + MER2 DNA MER2_type 3 345 0 407 108 0 0 chr1 82038863 82038928 -200154736 - AluSp SINE Alu -14 299 235 1180 139 6 0 chr1 82038928 82039100 -200154564 - AluSp SINE Alu -140 173 1 195 139 0 0 chr1 82039422 82039458 -200154206 + (GA)n Simple_repeat Simple_repeat 1 36 0 2357 84 0 0 chr1 82041177 82041476 -200152188 + AluY SINE Alu 1 299 -12 213 217 0 0 chr1 82042131 82042177 -200151487 + L2 LINE L2 3268 3313 0 2075 89 10 20 chr1 82042300 82042604 -200151060 - AluSc SINE Alu -8 301 1 22 0 0 0 chr1 82042792 82042814 -200150850 + AT_rich Low_complexity Low_complexity 1 22 0 2756 13 0 0 chr1 82043796 82044102 -200149562 + AluYa5 SINE Alu 1 306 -5 186 356 9 17 chr1 82044108 82044223 -200149441 + MIR SINE MIR 149 262 0 954 226 9 18 chr1 82044884 82045105 -200148559 + MER20 DNA MER1_type 1 219 0 473 324 134 0 chr1 82046761 82046977 -200146687 - MIR SINE MIR 0 262 18 312 269 298 29 chr1 82047173 82047344 -200146320 - MIR SINE MIR -15 247 31 2144 140 20 0 chr1 82048424 82048766 -200144898 + L1PB4 LINE L1 5795 6143 -13 244 322 26 26 chr1 82049254 82049369 -200144295 + L2 LINE L2 3199 3313 0 21 36 0 0 chr1 82049618 82049646 -200144018 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 82049901 82049937 -200143727 + AT_rich Low_complexity Low_complexity 1 36 0 240 316 48 75 chr1 82050915 82051102 -200142562 + MIR SINE MIR 20 201 -61 31 44 0 0 chr1 82051158 82051203 -200142461 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 82051427 82051462 -200142202 + AT_rich Low_complexity Low_complexity 1 35 0 35 71 0 0 chr1 82051663 82051733 -200141931 + AT_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chr1 82052488 82052516 -200141148 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 82053031 82053060 -200140604 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr1 82053479 82053519 -200140145 + (CA)n Simple_repeat Simple_repeat 2 41 0 334 220 127 17 chr1 82053817 82053935 -200139729 - MIR SINE MIR -9 253 123 451 324 57 11 chr1 82055012 82055188 -200138476 - MIR SINE MIR -32 230 47 198 361 59 17 chr1 82055228 82055347 -200138317 + L2 LINE L2 3190 3313 0 25 0 0 0 chr1 82055485 82055510 -200138154 + AT_rich Low_complexity Low_complexity 1 25 0 390 259 121 36 chr1 82056246 82056412 -200137252 + MIR SINE MIR 22 201 -61 249 318 31 16 chr1 82056798 82056940 -200136724 + MIR SINE MIR 5 111 -97 275 213 49 0 chr1 82057712 82057773 -200135891 - MIR SINE MIR -18 244 181 238 303 76 0 chr1 82057801 82057867 -200135797 - MIR SINE MIR -109 99 29 1040 208 5 15 chr1 82058037 82058239 -200135425 + MER6B DNA MER2_type 11 210 0 2374 94 5 57 chr1 82058435 82058807 -200134857 + THE1A LTR MaLR 3 355 0 200 189 27 0 chr1 82058979 82059016 -200134648 + CT-rich Low_complexity Low_complexity 1 38 0 287 286 47 41 chr1 82060282 82060453 -200133211 + MER112 DNA MER1_type 7 178 -82 26 0 0 0 chr1 82060491 82060517 -200133147 + AT_rich Low_complexity Low_complexity 1 26 0 201 235 86 49 chr1 82060638 82060719 -200132945 - L2 LINE L2 0 3272 3189 24 32 0 0 chr1 82062233 82062264 -200131400 + AT_rich Low_complexity Low_complexity 1 31 0 205 263 35 18 chr1 82062342 82062399 -200131265 - L3 LINE CR1 -54 1523 1466 1379 215 11 11 chr1 82062573 82062874 -200130790 + AluJo SINE Alu 5 305 0 668 294 57 4 chr1 82063539 82063787 -200129877 - LTR33A LTR ERVL 0 523 263 309 338 37 7 chr1 82063817 82063953 -200129711 - LTR33A LTR ERVL -325 198 59 23 33 0 0 chr1 82065853 82065883 -200127781 + AT_rich Low_complexity Low_complexity 1 30 0 269 324 14 14 chr1 82067891 82068033 -200125631 + GA-rich Low_complexity Low_complexity 2 143 0 241 313 6 42 chr1 82068342 82068508 -200125156 + A-rich Low_complexity Low_complexity 5 164 0 232 239 14 28 chr1 82068552 82068623 -200125041 + GA-rich Low_complexity Low_complexity 3 72 0 8424 78 3 1 chr1 82069327 82070394 -200123270 - HERVL LTR ERVL -2612 3042 1974 10311 86 5 1 chr1 82072248 82073668 -200119996 + L1P LINE L1 3467 4891 -1255 1504 147 0 0 chr1 82073768 82074006 -200119658 - L1PBa LINE L1 -5781 1082 845 26 0 0 0 chr1 82074249 82074275 -200119389 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 82074790 82074811 -200118853 + AT_rich Low_complexity Low_complexity 1 21 0 1127 207 0 10 chr1 82074816 82075024 -200118640 - MLT1C LTR MaLR 0 467 262 21 0 0 0 chr1 82075715 82075736 -200117928 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr1 82075974 82076026 -200117638 + AT_rich Low_complexity Low_complexity 1 52 0 21 95 0 0 chr1 82076245 82076308 -200117356 + AT_rich Low_complexity Low_complexity 1 63 0 1977 133 39 33 chr1 82076428 82076790 -200116874 - THE1B LTR MaLR 0 364 1 225 347 171 5 chr1 82077021 82077214 -200116450 + L2 LINE L2 2599 2823 -491 1588 203 55 19 chr1 82077245 82077609 -200116055 - MLT1B LTR MaLR 0 390 14 367 250 11 11 chr1 82077641 82077729 -200115935 + L2 LINE L2 3225 3312 -1 1682 155 44 0 chr1 82077743 82078043 -200115621 + AluSx SINE Alu 1 312 0 1630 76 14 5 chr1 82078606 82078817 -200114847 + AluY SINE Alu 1 213 -98 3362 229 79 70 chr1 82078918 82080475 -200113189 - L1M4 LINE L1 -753 5787 4217 1973 228 70 19 chr1 82080479 82081372 -200112292 - L1MDa LINE L1 -3563 2977 2052 2610 229 71 35 chr1 82081397 82081685 -200111979 - L1MDa LINE L1 -4598 1942 1666 2269 89 3 13 chr1 82081685 82082001 -200111663 - AluSp SINE Alu 0 313 1 2610 229 71 35 chr1 82082001 82082671 -200110993 - L1MDa LINE L1 -4874 1666 950 1599 235 49 3 chr1 82082652 82083022 -200110642 - L1MDa LINE L1 -6123 417 31 * 27 29 0 0 chr1 82083037 82083071 -200110593 + AT_rich Low_complexity Low_complexity 1 34 0 1372 293 49 23 chr1 82083705 82084176 -200109488 + MLT1E2 LTR MaLR 137 619 -7 305 346 56 0 chr1 82085024 82085131 -200108533 - L2 LINE L2 -597 2717 2605 362 342 154 0 chr1 82085145 82085294 -200108370 + MER5A DNA MER1_type 17 188 -1 415 326 22 17 chr1 82085296 82085474 -200108190 - L2 LINE L2 -703 2611 2433 336 107 0 0 chr1 82085573 82085606 -200108058 + (TA)n Simple_repeat Simple_repeat 2 34 -23 189 0 0 0 chr1 82085606 82085627 -200108037 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 330 26 0 0 chr1 82085626 82085665 -200107999 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 107 0 0 chr1 82085627 82085687 -200107977 + (TA)n Simple_repeat Simple_repeat 33 57 0 2066 114 7 7 chr1 82085688 82085977 -200107687 - AluSq SINE Alu -24 289 1 25 0 0 68 chr1 82086906 82086950 -200106714 + AT_rich Low_complexity Low_complexity 1 41 0 479 331 19 0 chr1 82086967 82087124 -200106540 - MIR SINE MIR -96 166 7 292 208 38 0 chr1 82087366 82087419 -200106245 + MER66A LTR ERV1 284 338 -140 315 0 0 0 chr1 82089425 82089460 -200104204 + (T)n Simple_repeat Simple_repeat 1 35 0 240 204 0 20 chr1 82089549 82089598 -200104066 + CT-rich Low_complexity Low_complexity 3 50 0 187 91 23 23 chr1 82089719 82089763 -200103901 + (CGG)n Simple_repeat Simple_repeat 3 46 0 312 70 0 0 chr1 82089771 82089814 -200103850 + (CAG)n Simple_repeat Simple_repeat 1 43 0 21 71 0 0 chr1 82089814 82089856 -200103808 + GC_rich Low_complexity Low_complexity 1 42 0 246 216 0 0 chr1 82089921 82089995 -200103669 + A-rich Low_complexity Low_complexity 1 74 0 1236 58 0 35 chr1 82093180 82093352 -200100312 - L1PA5 LINE L1 -6 6148 5983 682 204 119 40 chr1 82093652 82093698 -200099966 - MER20 DNA MER1_type -1 218 177 414 0 0 0 chr1 82093698 82093744 -200099920 + (TG)n Simple_repeat Simple_repeat 1 46 0 682 204 119 40 chr1 82093744 82093898 -200099766 - MER20 DNA MER1_type -42 177 2 555 14 0 0 chr1 82094980 82095051 -200098613 - L1PA2 LINE L1 -1 6154 6084 669 13 0 0 chr1 82095051 82095127 -200098537 + L1PA2 LINE L1 6018 6093 -62 23 33 0 0 chr1 82095162 82095192 -200098472 + AT_rich Low_complexity Low_complexity 1 30 0 266 272 49 87 chr1 82095729 82095913 -200097751 - L1ME3A LINE L1 -21 6149 5973 441 233 45 28 chr1 82096023 82096199 -200097465 - L1ME3A LINE L1 -239 5931 5753 4421 63 5 2 chr1 82098041 82098624 -200095040 - L1PA8 LINE L1 -1 6171 5587 1870 261 107 48 chr1 82098936 82099640 -200094024 - L1ME1 LINE L1 -5 6161 5500 1579 193 7 23 chr1 82099640 82099946 -200093718 + AluJo SINE Alu 1 301 -11 1870 261 107 48 chr1 82099946 82100810 -200092854 - L1ME1 LINE L1 -666 5500 4440 971 196 37 134 chr1 82100810 82101214 -200092450 - MLT1A1 LTR MaLR 0 365 1 1870 261 107 48 chr1 82101214 82101660 -200092004 - L1ME1 LINE L1 -1726 4440 4022 3209 282 46 53 chr1 82101663 82103442 -200090222 + L1M4c LINE L1 413 1787 -4516 8019 252 71 33 chr1 82103521 82104802 -200088862 + L1M4c LINE L1 2031 3262 -3120 2351 77 0 3 chr1 82104802 82105099 -200088565 + AluSx SINE Alu 1 296 -16 8019 252 71 33 chr1 82105099 82106921 -200086743 + L1M4c LINE L1 3262 5255 -1127 22 35 0 0 chr1 82107332 82107361 -200086303 + AT_rich Low_complexity Low_complexity 1 29 0 255 188 47 62 chr1 82108355 82108419 -200085245 + L3 LINE CR1 1372 1434 -143 22 56 0 0 chr1 82108653 82108689 -200084975 + AT_rich Low_complexity Low_complexity 1 36 0 194 280 65 11 chr1 82108734 82108827 -200084837 - MIR SINE MIR -65 197 100 200 220 55 0 chr1 82110335 82110397 -200083267 + MIR SINE MIR 111 176 -86 473 242 174 25 chr1 82110649 82110810 -200082854 - MER5A DNA MER1_type -1 188 4 35 0 0 0 chr1 82111089 82111124 -200082540 + AT_rich Low_complexity Low_complexity 1 35 0 8032 243 21 22 chr1 82112405 82115103 -200078561 - L1PA13 LINE L1 -2493 4304 1609 212 0 36 0 chr1 82115103 82115131 -200078533 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 8032 243 21 22 chr1 82115131 82115207 -200078457 - L1PA13 LINE L1 -5188 1609 1534 1828 176 79 36 chr1 82115508 82116042 -200077622 + MLT2A2 LTR ERVL 1 554 0 300 328 35 45 chr1 82116490 82116804 -200076860 - L1M2 LINE L1 -6534 315 5 1768 129 8 11 chr1 82117242 82117505 -200076159 + AluSx SINE Alu 1 262 -50 285 287 51 145 chr1 82117505 82117801 -200075863 + L2 LINE L2 2229 2496 -818 1600 104 0 0 chr1 82118968 82119189 -200074475 + AluSg/x SINE Alu 69 289 -23 414 85 0 0 chr1 82119189 82119248 -200074416 + (GGGGA)n Simple_repeat Simple_repeat 4 62 0 3294 18 8 0 chr1 82119408 82119791 -200073873 - L1P2 LINE L1 -420 5735 5350 358 40 0 0 chr1 82119791 82119840 -200073824 + L1PA4 LINE L1 6106 6155 0 24 32 0 0 chr1 82120514 82120545 -200073119 + AT_rich Low_complexity Low_complexity 1 31 0 363 237 213 24 chr1 82121512 82121698 -200071966 - MLT1E2 LTR MaLR -280 225 5 21 71 0 0 chr1 82121808 82121850 -200071814 + AT_rich Low_complexity Low_complexity 1 42 0 23 110 0 0 chr1 82122112 82122212 -200071452 + AT_rich Low_complexity Low_complexity 1 100 0 234 264 45 91 chr1 82122235 82122345 -200071319 + L2 LINE L2 3204 3308 -5 33 41 0 41 chr1 82122742 82122815 -200070849 + AT_rich Low_complexity Low_complexity 1 70 0 2020 126 0 3 chr1 82123322 82123638 -200070026 - AluY SINE Alu 0 315 1 252 0 0 0 chr1 82123639 82123667 -200069997 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1847 134 11 11 chr1 82123667 82123951 -200069713 - AluSq SINE Alu -27 286 3 235 205 12 72 chr1 82124050 82124133 -200069531 - L1ME LINE L1 -319 5802 5725 2299 133 39 6 chr1 82124435 82124796 -200068868 - THE1C LTR MaLR -2 373 1 8544 126 52 50 chr1 82124796 82126373 -200067291 - THE1C-int LTR MaLR 0 1580 1 2379 131 16 11 chr1 82126373 82126746 -200066918 - THE1C LTR MaLR 0 375 1 887 281 63 8 chr1 82126774 82127012 -200066652 + MIR SINE MIR 8 258 -4 2542 100 6 0 chr1 82127012 82127363 -200066301 + THE1A LTR MaLR 1 353 -2 699 182 0 0 chr1 82127667 82127788 -200065876 - FLAM_A SINE Alu -10 123 3 2823 200 12 13 chr1 82128025 82128145 -200065519 + L1PA16 LINE L1 4680 4799 -1367 2252 109 0 0 chr1 82128145 82128447 -200065217 + AluSc SINE Alu 1 302 -7 2823 200 12 13 chr1 82128447 82129130 -200064534 + L1PA16 LINE L1 4799 5476 -690 14579 152 22 19 chr1 82129136 82132660 -200061004 - L1PA10 LINE L1 0 6168 2632 272 27 27 0 chr1 82132660 82132697 -200060967 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 11225 38 7 0 chr1 82132699 82134817 -200058847 - L1PA5 LINE L1 -19 6135 4009 14969 41 0 0 chr1 82134817 82136677 -200056987 + L1PA5 LINE L1 2140 3999 -2147 2687 159 2 2 chr1 82136675 82137127 -200056537 - L1PA10 LINE L1 -3506 2640 2189 * 4093 121 30 50 chr1 82137127 82137840 -200055824 + L1PA16 LINE L1 5460 6157 -9 235 317 44 6 chr1 82138154 82138334 -200055330 - L1MDa LINE L1 -3905 2635 2449 25 51 0 0 chr1 82138447 82138486 -200055178 + AT_rich Low_complexity Low_complexity 1 39 0 423 0 0 0 chr1 82138795 82138842 -200054822 + (CA)n Simple_repeat Simple_repeat 1 47 0 255 278 159 8 chr1 82139003 82139129 -200054535 - MLT1J2 LTR MaLR -301 149 5 234 81 0 0 chr1 82139975 82140012 -200053652 + (CA)n Simple_repeat Simple_repeat 2 38 0 550 198 0 0 chr1 82140311 82140407 -200053257 - FLAM_A SINE Alu -29 113 18 32 0 0 0 chr1 82140705 82140737 -200052927 + AT_rich Low_complexity Low_complexity 1 32 0 414 354 114 0 chr1 82140982 82141157 -200052507 + MER91A DNA MER1_type 1 195 -1 26 64 0 0 chr1 82141563 82141610 -200052054 + AT_rich Low_complexity Low_complexity 1 47 0 260 274 119 47 chr1 82141766 82141884 -200051780 - L1MC/D LINE L1 -471 5650 5542 2103 134 22 27 chr1 82141884 82142250 -200051414 + THE1B LTR MaLR 1 364 0 260 274 119 47 chr1 82142250 82142441 -200051223 - L1MC/D LINE L1 -579 5542 5337 22 0 0 0 chr1 82143121 82143143 -200050521 + AT_rich Low_complexity Low_complexity 1 22 0 517 174 188 0 chr1 82143268 82143412 -200050252 - L1MB7 LINE L1 -13 6171 6001 721 114 0 0 chr1 82143424 82143529 -200050135 + MLT1D LTR MaLR 401 505 0 812 251 51 18 chr1 82143530 82143769 -200049895 - L1M4 LINE L1 -559 5559 5329 1736 150 37 3 chr1 82143769 82144096 -200049568 - L1MA4 LINE L1 0 6300 5963 812 251 51 18 chr1 82144096 82144508 -200049156 - L1M4 LINE L1 -789 5329 4863 1217 200 15 71 chr1 82144571 82144771 -200048893 - AluJo SINE Alu 0 312 135 270 0 0 0 chr1 82144771 82144801 -200048863 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1217 200 15 71 chr1 82144801 82144925 -200048739 - AluJo SINE Alu -177 135 6 2427 249 97 47 chr1 82144928 82145914 -200047750 - L1M4 LINE L1 -1378 4702 3651 4363 112 13 13 chr1 82145914 82146604 -200047060 - L1PA14 LINE L1 -12 6149 5460 2427 249 97 47 chr1 82146604 82146736 -200046928 - L1M4 LINE L1 -2429 3651 3527 265 302 9 0 chr1 82146897 82147003 -200046661 - L1M4 LINE L1 -5096 974 868 412 297 93 32 chr1 82147012 82147613 -200046051 - L1M4c LINE L1 -4625 1757 1067 303 327 91 20 chr1 82148409 82148608 -200045056 - L1M4 LINE L1 -5856 214 2 349 333 114 15 chr1 82148609 82149014 -200044650 - L1M4 LINE L1 -2786 3294 2850 6519 64 17 14 chr1 82149067 82149330 -200044334 + L1PA7 LINE L1 5217 5478 -676 2257 107 3 0 chr1 82149330 82149630 -200044034 + AluSp SINE Alu 1 301 -12 6519 64 17 14 chr1 82149630 82150298 -200043366 + L1PA7 LINE L1 5478 6150 -4 435 343 64 23 chr1 82151100 82151319 -200042345 - MIR SINE MIR -29 233 6 43 35 0 0 chr1 82151904 82151961 -200041703 + AT_rich Low_complexity Low_complexity 1 57 0 282 29 0 0 chr1 82152029 82152064 -200041600 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr1 82153036 82153068 -200040596 + AT_rich Low_complexity Low_complexity 1 32 0 204 125 0 0 chr1 82154847 82154879 -200038785 + (A)n Simple_repeat Simple_repeat 1 32 0 1482 221 146 5 chr1 82154995 82155434 -200038230 - MLT1D LTR MaLR -2 503 3 604 297 45 49 chr1 82156321 82156567 -200037097 - MIR SINE MIR -1 261 17 192 77 0 0 chr1 82156687 82156713 -200036951 + (A)n Simple_repeat Simple_repeat 1 26 0 316 311 19 28 chr1 82157428 82157534 -200036130 + MIR SINE MIR 48 152 -110 2134 149 77 15 chr1 82160261 82160560 -200033104 + MSTA LTR MaLR 1 333 -95 1931 139 13 43 chr1 82160560 82160935 -200032729 + THE1B LTR MaLR 1 364 0 2134 149 77 15 chr1 82160935 82161038 -200032626 + MSTA LTR MaLR 333 428 0 229 116 47 0 chr1 82161693 82161736 -200031928 + L1M2 LINE L1 2441 2485 -4364 447 305 30 25 chr1 82161783 82161983 -200031681 + L1MB8 LINE L1 1613 1813 -4571 3892 240 66 46 chr1 82162315 82164014 -200029650 + L1MB8 LINE L1 2883 4615 -1767 295 41 41 0 chr1 82164624 82164673 -200028991 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2801 234 31 32 chr1 82165549 82166183 -200027481 + L1MB8 LINE L1 4594 5227 -1193 2251 107 0 0 chr1 82166183 82166483 -200027181 + AluSg SINE Alu 1 300 -10 2801 234 31 32 chr1 82166483 82166497 -200027167 + L1MB8 LINE L1 5227 5240 -1180 459 0 0 0 chr1 82166497 82166548 -200027116 + (CA)n Simple_repeat Simple_repeat 2 52 0 2801 234 31 32 chr1 82166548 82167421 -200026243 + L1MB8 LINE L1 5240 6112 -308 * 3965 188 2 19 chr1 82167416 82168250 -200025414 - L1PA15 LINE L1 -1321 4825 4006 5691 124 14 1 chr1 82168251 82169558 -200024106 + L1PA15 LINE L1 4839 6150 -15 704 237 6 17 chr1 82169564 82169741 -200023923 + L1MB8 LINE L1 6100 6274 -140 18349 91 3 16 chr1 82169759 82173225 -200020439 - L1PA7 LINE L1 -2 6152 2721 5831 102 6 25 chr1 82173232 82173246 -200020418 + L1P LINE L1 1824 1837 -4309 2350 92 0 3 chr1 82173246 82173551 -200020113 - AluSp SINE Alu -9 304 1 5831 102 6 25 chr1 82173551 82174421 -200019243 + L1P LINE L1 1837 2691 -3455 231 217 87 0 chr1 82174421 82174490 -200019174 + L1MB8 LINE L1 6335 6409 -5 847 271 113 33 chr1 82174495 82174621 -200019043 + L1ME2 LINE L1 3850 3965 -2181 2260 108 38 27 chr1 82174621 82174992 -200018672 + THE1C LTR MaLR 1 375 0 847 271 113 33 chr1 82174992 82175353 -200018311 + L1ME2 LINE L1 3965 4376 -1770 273 263 0 34 chr1 82175348 82175466 -200018198 + L1ME2 LINE L1 4585 4698 -1448 * 1553 266 59 10 chr1 82175520 82176012 -200017652 + L1ME2 LINE L1 5486 6001 -163 626 181 40 13 chr1 82176059 82176208 -200017456 + L1MA10 LINE L1 6180 6332 -2 188 331 125 16 chr1 82176403 82176587 -200017077 - L2 LINE L2 -701 2613 2410 277 344 79 26 chr1 82176888 82177077 -200016587 - L3 LINE CR1 -42 1535 1337 254 346 101 0 chr1 82177258 82177437 -200016227 - L3 LINE CR1 -297 1280 1084 199 280 27 13 chr1 82177472 82177547 -200016117 - L3 LINE CR1 -580 997 922 266 304 54 9 chr1 82177585 82177697 -200015967 - LTR67 LTR ERVL -8 549 433 2672 308 67 52 chr1 82178324 82180185 -200013479 + HERV16 LTR ERVL 1847 3793 -1971 365 315 34 45 chr1 82180308 82180486 -200013178 + HERV16 LTR ERVL 3912 4087 -1398 7723 130 18 11 chr1 82180507 82182892 -200010772 - L1MA1 LINE L1 0 7721 5317 14719 179 43 6 chr1 82182899 82185511 -200008153 - L1MA1 LINE L1 -4745 2820 102 193 29 29 29 chr1 82185511 82185546 -200008118 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 14719 179 43 6 chr1 82185546 82185637 -200008027 - L1MA1 LINE L1 -7463 102 16 507 287 188 6 chr1 82185650 82185831 -200007833 + HERV16 LTR ERVL 4144 4357 -1407 29 28 0 0 chr1 82186219 82186255 -200007409 + AT_rich Low_complexity Low_complexity 1 36 0 291 345 78 17 chr1 82186365 82186481 -200007183 - L2 LINE L2 -2 3270 3148 530 302 22 28 chr1 82187442 82187621 -200006043 - MIR SINE MIR -27 235 58 257 196 54 0 chr1 82188564 82188656 -200005008 + (TA)n Simple_repeat Simple_repeat 2 98 0 2349 42 0 3 chr1 82189302 82189619 -200004045 - AluY SINE Alu 0 316 1 378 0 0 0 chr1 82189619 82189661 -200004003 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr1 82189874 82189896 -200003768 + AT_rich Low_complexity Low_complexity 1 22 0 295 175 32 0 chr1 82190334 82190397 -200003267 - Charlie2 DNA MER1_type -27 2835 2771 749 219 60 60 chr1 82190422 82190502 -200003162 + HsTC2 DNA Tc2 1527 1606 -292 2479 49 3 3 chr1 82190502 82190810 -200002854 + AluY SINE Alu 1 308 -3 749 219 60 60 chr1 82190810 82191098 -200002566 + HsTC2 DNA Tc2 1605 1895 -3 233 366 35 42 chr1 82191104 82191246 -200002418 - L2 LINE L2 -620 2694 2554 32 0 0 0 chr1 82191910 82191942 -200001722 + AT_rich Low_complexity Low_complexity 1 32 0 2058 135 28 25 chr1 82193108 82193471 -200000193 - THE1B LTR MaLR 0 364 1 10667 201 30 105 chr1 82193778 82195148 -199998516 + L1MA3 LINE L1 1 1472 -5535 2022 134 13 0 chr1 82195148 82195447 -199998217 + AluSx SINE Alu 1 303 -9 10667 201 30 105 chr1 82195447 82201637 -199992027 + L1MA3 LINE L1 1472 7002 -5 231 204 0 0 chr1 82202538 82202587 -199991077 + CT-rich Low_complexity Low_complexity 4 52 0 2457 162 7 5 chr1 82202647 82203224 -199990440 - L1M1 LINE L1 -743 5403 4888 232 250 53 0 chr1 82203507 82203583 -199990081 + L1MC4 LINE L1 6613 6692 -1350 834 241 18 9 chr1 82203615 82203835 -199989829 + L1PA16 LINE L1 5941 6162 -4 1371 152 0 0 chr1 82204861 82205065 -199988599 + AluSg/x SINE Alu 84 287 -25 192 40 0 0 chr1 82205069 82205094 -199988570 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 239 309 21 21 chr1 82205708 82205805 -199987859 + MER91A DNA MER1_type 18 114 -82 27 29 0 0 chr1 82206002 82206036 -199987628 + AT_rich Low_complexity Low_complexity 1 34 0 2151 103 3 3 chr1 82206211 82206511 -199987153 + AluSx SINE Alu 1 300 -12 3698 25 0 2 chr1 82207869 82208312 -199985352 + L1PA4 LINE L1 5709 6150 -5 24 0 0 0 chr1 82210110 82210134 -199983530 + AT_rich Low_complexity Low_complexity 1 24 0 543 308 73 38 chr1 82210783 82211153 -199982511 + L2 LINE L2 2347 2729 -585 372 317 105 38 chr1 82211533 82211877 -199981787 - MLT1J2 LTR MaLR 0 450 84 1707 124 0 8 chr1 82211946 82212203 -199981461 - AluSx SINE Alu -9 303 49 316 279 55 48 chr1 82212347 82212513 -199981151 + L1MEc LINE L1 2152 2261 -3954 425 19 19 0 chr1 82212513 82212567 -199981097 + (CA)n Simple_repeat Simple_repeat 2 56 0 316 279 55 48 chr1 82212567 82212730 -199980934 + L1MEc LINE L1 2261 2422 -3793 27 87 0 0 chr1 82212774 82212843 -199980821 + AT_rich Low_complexity Low_complexity 1 69 0 230 266 93 87 chr1 82212859 82213675 -199979989 + L1MEc LINE L1 2713 3533 -2682 253 303 189 4 chr1 82213703 82213931 -199979733 + L1MEc LINE L1 4040 4309 -1906 1694 159 0 40 chr1 82213943 82214264 -199979400 + AluJo SINE Alu 3 310 -2 533 84 24 0 chr1 82214266 82214349 -199979315 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 248 265 82 7 chr1 82214420 82214567 -199979097 + L1MEc LINE L1 4381 4538 -1677 736 348 112 20 chr1 82214591 82214983 -199978681 + L2 LINE L2 2730 3194 -119 180 0 0 0 chr1 82214983 82215003 -199978661 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 736 348 112 20 chr1 82215003 82215131 -199978533 + L2 LINE L2 3194 3309 -4 333 376 108 41 chr1 82215582 82215992 -199977672 + L2 LINE L2 2807 3242 -30 415 256 6 6 chr1 82216012 82216184 -199977480 + GA-rich Low_complexity Low_complexity 1 172 0 596 239 196 0 chr1 82216225 82216409 -199977255 - MER58A DNA MER1_type 0 224 5 24 53 0 0 chr1 82217952 82217990 -199975674 + AT_rich Low_complexity Low_complexity 1 38 0 430 345 74 9 chr1 82218229 82218458 -199975206 - MIR SINE MIR -17 245 2 21 0 0 0 chr1 82218929 82218950 -199974714 + AT_rich Low_complexity Low_complexity 1 21 0 290 290 114 85 chr1 82220951 82221258 -199972406 + L2 LINE L2 2966 3281 -32 570 330 40 4 chr1 82221358 82221585 -199972079 - MIR SINE MIR -3 259 25 259 148 16 16 chr1 82221635 82221696 -199971968 + GA-rich Low_complexity Low_complexity 3 63 0 294 95 0 0 chr1 82222015 82222057 -199971607 + (TAA)n Simple_repeat Simple_repeat 2 43 0 534 297 100 7 chr1 82222326 82222516 -199971148 - MIR SINE MIR -49 213 9 183 167 0 0 chr1 82223134 82223176 -199970488 + A-rich Low_complexity Low_complexity 1 42 0 2509 158 12 2 chr1 82223207 82223637 -199970027 + MER57B LTR ERV1 1 434 0 2194 152 5 19 chr1 82223793 82224162 -199969502 - THE1B LTR MaLR 0 364 1 10517 110 28 0 chr1 82224162 82225699 -199967965 - THE1B-int LTR MaLR 0 1580 1 2331 144 5 14 chr1 82225699 82226066 -199967598 - THE1B LTR MaLR 0 364 1 200 240 20 0 chr1 82226184 82226234 -199967430 + MIR SINE MIR 124 174 -88 1719 188 177 77 chr1 82226338 82227015 -199966649 - LTR1B LTR ERV1 -74 752 8 188 236 333 0 chr1 82227099 82227171 -199966493 + L2 LINE L2 3207 3302 -11 791 256 23 6 chr1 82227194 82227370 -199966294 - MER5A DNA MER1_type -9 180 2 228 316 59 22 chr1 82227901 82228037 -199965627 - L2 LINE L2 -1029 2285 2145 29 28 0 0 chr1 82228482 82228518 -199965146 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 82230346 82230368 -199963296 + AT_rich Low_complexity Low_complexity 1 22 0 361 318 58 21 chr1 82232092 82232334 -199961330 - MER89-int LTR ERV1 -3794 3007 2757 385 340 102 0 chr1 82235117 82235352 -199958312 - MER90 LTR ERV1 0 575 317 2996 157 35 40 chr1 82235361 82235960 -199957704 + L1MC1 LINE L1 5733 6328 -5 1120 194 0 15 chr1 82236016 82236254 -199957410 + AluJo SINE Alu 86 320 0 5424 42 0 1 chr1 82236638 82237328 -199956336 + L1PA5 LINE L1 5475 6163 0 631 209 105 7 chr1 82237328 82237481 -199956183 + MLT1J2 LTR MaLR 281 448 -2 1633 289 114 38 chr1 82237672 82238834 -199954830 - L2 LINE L2 -83 3230 1975 346 320 57 29 chr1 82239243 82239418 -199954246 - L3 LINE CR1 -171 1406 1227 199 150 25 0 chr1 82239530 82239570 -199954094 - L3 LINE CR1 -546 1031 991 186 133 0 0 chr1 82239582 82239612 -199954052 + (ATG)n Simple_repeat Simple_repeat 2 31 0 2259 105 3 0 chr1 82239754 82240059 -199953605 - AluSp SINE Alu -7 306 1 293 346 61 21 chr1 82240210 82240402 -199953262 + MIR SINE MIR 2 202 -6 503 272 92 28 chr1 82240643 82240860 -199952804 - MIR SINE MIR 0 262 32 204 40 0 0 chr1 82241631 82241656 -199952008 + (CAAT)n Simple_repeat Simple_repeat 3 27 0 250 277 75 42 chr1 82241812 82241926 -199951738 - MIR SINE MIR -65 143 43 324 307 123 0 chr1 82242245 82242408 -199951256 - MIR SINE MIR -16 246 64 620 191 0 0 chr1 82242606 82242721 -199950943 + FLAM_A SINE Alu 1 115 -18 529 80 23 0 chr1 82242721 82242809 -199950855 + (TAGA)n Simple_repeat Simple_repeat 1 90 0 318 287 20 0 chr1 82243697 82243798 -199949866 - MLT1J1 LTR MaLR 0 446 344 211 232 29 29 chr1 82244200 82244269 -199949395 - L2 LINE L2 -270 3002 2934 239 333 68 41 chr1 82244343 82244490 -199949174 - L2 LINE L2 -4 3268 3118 236 339 71 18 chr1 82244632 82244744 -199948920 - L2 LINE L2 0 3313 3196 192 77 0 0 chr1 82246305 82246331 -199947333 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 223 255 248 47 chr1 82246492 82246641 -199947023 - MER5A DNA MER1_type -9 180 2 245 281 34 22 chr1 82246659 82246748 -199946916 + L2 LINE L2 2230 2319 -995 395 179 15 0 chr1 82246822 82246889 -199946775 + Tigger2 DNA MER2_type 2 69 -2649 * 2192 181 57 7 chr1 82246879 82247304 -199946360 + Tigger2 DNA MER2_type 2273 2718 0 313 152 0 0 chr1 82247402 82247448 -199946216 - MSTD LTR MaLR -270 126 81 1483 209 72 14 chr1 82247822 82248167 -199945497 - MLT1A1 LTR MaLR 0 365 1 338 230 23 0 chr1 82248339 82248426 -199945238 - MER53 DNA DNA -76 113 25 320 204 68 0 chr1 82248351 82248439 -199945225 + MER53 DNA DNA 96 189 0 * 546 181 0 0 chr1 82248482 82248587 -199945077 + CT-rich Low_complexity Low_complexity 3 107 0 211 336 17 35 chr1 82248589 82248705 -199944959 + L2 LINE L2 3160 3273 -40 211 262 10 87 chr1 82249596 82249699 -199943965 - L2 LINE L2 0 3313 3219 685 331 98 66 chr1 82250054 82250792 -199942872 + L2 LINE L2 464 1224 -2090 324 306 21 72 chr1 82250838 82251031 -199942633 - L2 LINE L2 -5 3308 3126 251 278 69 52 chr1 82251788 82251961 -199941703 + L2 LINE L2 1811 1986 -1328 1682 182 3 46 chr1 82252346 82252670 -199940994 - AluJo SINE Alu -2 310 1 188 324 66 78 chr1 82255044 82255300 -199938364 + L2 LINE L2 2722 2974 -340 691 330 77 48 chr1 82255783 82256558 -199937106 + L2 LINE L2 1475 2272 -1042 398 395 35 44 chr1 82256798 82257137 -199936527 + L2 LINE L2 2935 3270 -2 194 370 49 25 chr1 82258245 82258407 -199935257 + L2 LINE L2 2621 2786 -528 2123 112 7 0 chr1 82258731 82259025 -199934639 - AluSx SINE Alu -14 298 3 2152 99 0 0 chr1 82260229 82260512 -199933152 + AluSg SINE Alu 1 283 -27 405 238 0 0 chr1 82260512 82260613 -199933051 + (TA)n Simple_repeat Simple_repeat 2 102 0 2118 122 0 0 chr1 82262201 82262496 -199931168 - AluSx SINE Alu -16 296 2 290 274 9 18 chr1 82262683 82262796 -199930868 + (TA)n Simple_repeat Simple_repeat 2 113 0 22 70 0 0 chr1 82263065 82263108 -199930556 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr1 82263444 82263486 -199930178 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr1 82263962 82263997 -199929667 + AT_rich Low_complexity Low_complexity 1 35 0 208 28 83 0 chr1 82264998 82265034 -199928630 + A-rich Low_complexity Low_complexity 2 40 0 2020 94 3 88 chr1 82265247 82265586 -199928078 + AluSg SINE Alu 1 310 0 539 242 238 45 chr1 82265682 82265905 -199927759 + L2 LINE L2 3046 3311 -2 1889 156 0 3 chr1 82267137 82267432 -199926232 - AluSx SINE Alu -18 294 1 23 0 0 0 chr1 82267439 82267462 -199926202 + AT_rich Low_complexity Low_complexity 1 23 0 324 318 63 31 chr1 82267839 82268092 -199925572 - MIR SINE MIR 0 262 5 1835 143 7 18 chr1 82268365 82268651 -199925013 + AluJo SINE Alu 1 283 -29 1131 197 60 150 chr1 82268745 82269298 -199924366 + MLT1D LTR MaLR 3 505 0 21 0 0 0 chr1 82270996 82271017 -199922647 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 82271123 82271145 -199922519 + AT_rich Low_complexity Low_complexity 1 22 0 197 313 31 21 chr1 82271564 82271660 -199922004 - L2 LINE L2 -170 3143 3047 23 0 0 0 chr1 82272547 82272570 -199921094 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr1 82273313 82273350 -199920314 + AT_rich Low_complexity Low_complexity 1 37 0 9030 152 35 1 chr1 82274319 82275856 -199917808 + Tigger1 DNA MER2_type 31 1619 -799 4556 17 0 0 chr1 82275856 82276372 -199917292 - L1PA3 LINE L1 -115 6040 5525 794 21 0 11 chr1 82276370 82276501 -199917163 + L1PA3 LINE L1 6038 6167 0 * 4183 140 61 18 chr1 82276501 82276591 -199917073 + Tigger1 DNA MER2_type 1613 1698 -720 2285 95 10 93 chr1 82276591 82277000 -199916664 - THE1C LTR MaLR 0 375 1 4183 140 61 18 chr1 82277000 82277681 -199915983 + Tigger1 DNA MER2_type 1698 2417 -1 1594 175 62 0 chr1 82277687 82278024 -199915640 + MER46B DNA MER2_type 4 236 0 5072 184 12 1 chr1 82278851 82280395 -199913269 - L1MA6 LINE L1 0 6300 4686 2430 173 19 14 chr1 82280392 82280878 -199912786 + L1MA6 LINE L1 4197 4684 -1462 * 704 265 27 5 chr1 82281149 82281334 -199912330 + MER5A DNA MER1_type 1 189 0 2094 194 75 5 chr1 82281555 82281982 -199911682 - LTR32 LTR ERVL 0 471 15 417 74 0 0 chr1 82281982 82282036 -199911628 - LTR32 LTR ERVL -403 68 15 500 305 20 20 chr1 82282046 82282243 -199911421 - HERVL32 LTR ERVL -7 3411 3215 * 658 344 3 3 chr1 82282142 82282424 -199911240 - PRIMA41-int LTR ERV1 -286 7470 7189 397 307 71 0 chr1 82282300 82282440 -199911224 - HERVL66 LTR ERVL -213 4116 3967 * 1568 253 69 81 chr1 82283889 82284834 -199908830 - HERVL66 LTR ERVL -206 3212 2566 1836 237 88 47 chr1 82284836 82285367 -199908297 - MLT2B3 LTR ERVL -1 553 1 5667 209 63 64 chr1 82285367 82286950 -199906714 - HERVL32 LTR ERVL -696 2722 1142 3299 275 31 14 chr1 82287049 82287954 -199905710 - HERVL32 LTR ERVL -2448 970 51 2303 163 78 21 chr1 82288011 82288447 -199905217 - LTR32 LTR ERVL 0 471 11 24 32 0 0 chr1 82289472 82289503 -199904161 + AT_rich Low_complexity Low_complexity 1 31 0 29 70 0 0 chr1 82291417 82291474 -199902190 + AT_rich Low_complexity Low_complexity 1 57 0 458 321 62 33 chr1 82292478 82292721 -199900943 + MIR SINE MIR 13 262 0 1426 287 69 32 chr1 82293167 82293598 -199900066 - L1ME3 LINE L1 -33 6129 5715 387 0 0 0 chr1 82293598 82293641 -199900023 + (TA)n Simple_repeat Simple_repeat 1 43 0 1426 287 69 32 chr1 82293641 82294365 -199899299 - L1ME3 LINE L1 -447 5715 4929 24 0 0 0 chr1 82294985 82295009 -199898655 + AT_rich Low_complexity Low_complexity 1 24 0 200 221 26 26 chr1 82296451 82296528 -199897136 + (TTA)n Simple_repeat Simple_repeat 2 78 0 1216 209 141 116 chr1 82297003 82297514 -199896150 - MLT1E2 LTR MaLR 0 626 131 314 332 82 18 chr1 82297567 82297787 -199895877 + L1ME3A LINE L1 5665 5898 -272 2173 96 0 0 chr1 82297838 82298120 -199895544 + AluSc SINE Alu 13 294 -15 243 305 105 9 chr1 82298398 82298503 -199895161 - L2 LINE L2 -580 2734 2620 747 311 34 4 chr1 82298593 82298860 -199894804 - L2 LINE L2 -853 2461 2187 369 201 0 34 chr1 82298919 82299098 -199894566 + (TA)n Simple_repeat Simple_repeat 2 174 0 31 26 0 0 chr1 82299113 82299151 -199894513 + AT_rich Low_complexity Low_complexity 1 38 0 237 347 56 28 chr1 82299634 82299850 -199893814 - L2 LINE L2 -1795 1519 1298 1559 210 84 3 chr1 82300971 82301314 -199892350 - MLT1A2 LTR MaLR 0 374 4 216 158 0 0 chr1 82301626 82301664 -199892000 + (TA)n Simple_repeat Simple_repeat 1 38 0 2263 110 0 3 chr1 82301664 82301964 -199891700 - AluSx SINE Alu -11 301 3 1465 231 117 20 chr1 82302199 82302653 -199891011 + LTR50 LTR ERVL 15 512 -283 511 136 0 23 chr1 82302655 82302743 -199890921 - Tigger5 DNA MER2_type 0 2323 2238 709 193 206 5 chr1 82302821 82303039 -199890625 + LTR50 LTR ERVL 526 787 -8 1347 197 30 39 chr1 82304154 82304484 -199889180 + MLT2D LTR ERVL 1 327 -87 180 111 0 0 chr1 82307799 82307826 -199885838 + (T)n Simple_repeat Simple_repeat 1 27 0 548 214 9 0 chr1 82307826 82307938 -199885726 + L1MD2 LINE L1 5900 6012 -347 22 35 0 0 chr1 82308183 82308212 -199885452 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr1 82308303 82308330 -199885334 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 82308672 82308693 -199884971 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 82309270 82309291 -199884373 + AT_rich Low_complexity Low_complexity 1 21 0 1001 309 28 58 chr1 82309598 82309963 -199883701 + LTR16A LTR ERVL 31 383 -67 2192 126 0 0 chr1 82309963 82310273 -199883391 - AluSq SINE Alu -3 310 1 1001 309 28 58 chr1 82310273 82310334 -199883330 + LTR16A LTR ERVL 383 444 -6 207 191 0 0 chr1 82310335 82310377 -199883287 + (CATA)n Simple_repeat Simple_repeat 3 44 0 743 250 37 5 chr1 82310607 82310795 -199882869 + MIR SINE MIR 26 219 -43 500 307 80 19 chr1 82311143 82311355 -199882309 + MLT1G LTR MaLR 10 234 -356 351 44 0 0 chr1 82311960 82312005 -199881659 + (CA)n Simple_repeat Simple_repeat 1 45 0 383 271 57 79 chr1 82314770 82314947 -199878717 - MER5A DNA MER1_type 0 189 17 229 309 0 15 chr1 82315637 82315705 -199877959 - L2 LINE L2 -1 3312 3246 486 281 129 17 chr1 82315774 82315952 -199877712 + L2 LINE L2 2585 2782 -532 628 336 18 42 chr1 82315983 82316266 -199877398 + L2 LINE L2 2888 3163 -150 24 0 0 0 chr1 82316285 82316309 -199877355 + AT_rich Low_complexity Low_complexity 1 24 0 236 390 0 29 chr1 82316326 82316431 -199877233 + L2 LINE L2 3160 3261 -52 1039 160 11 27 chr1 82316748 82316936 -199876728 + THE1B LTR MaLR 180 364 0 10671 90 5 3 chr1 82316936 82318513 -199875151 + THE1B-int LTR MaLR 1 1580 0 2185 144 11 19 chr1 82318513 82318880 -199874784 + THE1B LTR MaLR 1 364 0 228 386 45 22 chr1 82320500 82320723 -199872941 - MIR SINE MIR -1 261 34 5621 228 67 46 chr1 82421560 82423300 -199770364 - L1P LINE L1 -3105 3041 1266 556 208 0 0 chr1 82423332 82423438 -199770226 - U6 snRNA snRNA 0 107 2 1734 278 110 18 chr1 82423439 82424524 -199769140 + L1M4 LINE L1 2864 4048 -2098 2762 247 53 11 chr1 82424573 82425526 -199768138 - L1ME1 LINE L1 0 6402 5411 26 50 0 0 chr1 82425592 82425632 -199768032 + AT_rich Low_complexity Low_complexity 1 40 0 1135 203 46 20 chr1 82425650 82425995 -199767669 - L1ME1 LINE L1 -1492 4890 4537 1156 267 90 48 chr1 82426036 82426782 -199766882 - L1ME1 LINE L1 -1948 4434 3658 251 146 18 0 chr1 82426836 82426891 -199766773 + (TA)n Simple_repeat Simple_repeat 1 56 0 229 265 48 0 chr1 82426895 82426978 -199766686 - L1MC4 LINE L1 -1342 6700 6614 359 316 70 59 chr1 82427015 82427806 -199765858 - L1ME1 LINE L1 -4539 1845 1047 3328 164 25 8 chr1 82427815 82428450 -199765214 - L1MA4 LINE L1 -12 6288 5643 280 299 0 0 chr1 82428464 82428541 -199765123 + (TA)n Simple_repeat Simple_repeat 1 77 0 3918 178 21 111 chr1 82428545 82430065 -199763599 - L1MA4 LINE L1 -646 5654 4284 1888 104 11 7 chr1 82430065 82430379 -199763285 - AluSg SINE Alu 0 315 1 3918 178 21 111 chr1 82430379 82430445 -199763219 - L1MA4 LINE L1 -2016 4284 4214 10153 197 52 13 chr1 82430451 82431778 -199761886 + L1PA13 LINE L1 202 1675 -5122 672 13 0 0 chr1 82431778 82431855 -199761809 + (TA)n Simple_repeat Simple_repeat 1 77 0 10153 197 52 13 chr1 82431855 82432850 -199760814 + L1PA13 LINE L1 1675 2630 -4167 1072 288 30 37 chr1 82432995 82433460 -199760204 - L1M4b LINE L1 -4726 2162 1701 621 353 74 25 chr1 82433798 82434282 -199759382 - L1M3b LINE L1 -5772 509 2 256 231 51 0 chr1 82434333 82434411 -199759253 - L1M4b LINE L1 -5306 1553 1472 21 71 0 0 chr1 82435341 82435383 -199758281 + AT_rich Low_complexity Low_complexity 1 42 0 357 350 81 15 chr1 82435833 82436030 -199757634 + MIR SINE MIR 32 241 -21 420 354 56 6 chr1 82436617 82436778 -199756886 - MIR SINE MIR -74 188 20 282 165 38 0 chr1 82437738 82437817 -199755847 + (TA)n Simple_repeat Simple_repeat 1 82 0 2296 234 116 13 chr1 82437859 82438654 -199755010 - MER69 DNA AcHobo 0 2526 1650 1247 302 52 42 chr1 82438691 82439304 -199754360 - MER69 DNA AcHobo -1841 685 67 272 352 0 7 chr1 82439823 82439968 -199753696 + L1ME3A LINE L1 5800 5943 -227 327 25 0 0 chr1 82439968 82440008 -199753656 + (TG)n Simple_repeat Simple_repeat 1 40 0 2498 106 0 6 chr1 82440492 82440849 -199752815 - THE1A LTR MaLR 0 355 1 198 0 0 0 chr1 82441478 82441500 -199752164 + (TG)n Simple_repeat Simple_repeat 2 23 0 1446 271 76 0 chr1 82441807 82442239 -199751425 + LTR33 LTR ERVL 33 497 -24 197 322 51 0 chr1 82442299 82442358 -199751306 + L3 LINE CR1 1011 1072 -505 399 360 35 15 chr1 82442489 82442689 -199750975 + L3 LINE CR1 1355 1558 -19 191 276 46 81 chr1 82444771 82444858 -199748806 - L2 LINE L2 -27 3245 3162 213 325 157 12 chr1 82447066 82447149 -199746515 - L2 LINE L2 -27 3286 3192 1758 226 91 56 chr1 82447553 82448156 -199745508 + MLT1E3 LTR MaLR 1 624 0 186 43 0 0 chr1 82450893 82450916 -199742748 + (TTG)n Simple_repeat Simple_repeat 2 24 0 287 246 40 95 chr1 82452098 82452224 -199741440 - MLT1J LTR MaLR -317 194 76 1959 102 7 34 chr1 82453209 82453503 -199740161 - AluSc SINE Alu -17 292 7 13090 183 65 12 chr1 82453796 82456377 -199737287 + Tigger2 DNA MER2_type 1 2718 0 883 179 16 38 chr1 82456795 82456846 -199736818 - MLT2B3 LTR ERVL 0 554 503 414 0 0 0 chr1 82456846 82456892 -199736772 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 883 179 16 38 chr1 82456892 82457024 -199736640 - MLT2B3 LTR ERVL -51 503 375 753 226 123 15 chr1 82457010 82457205 -199736459 - MLT2B3 LTR ERVL -315 239 24 * 4076 182 26 29 chr1 82457640 82458498 -199735166 + L1MD1 LINE L1 5386 6240 -2 366 23 0 0 chr1 82458609 82458652 -199735012 + (CA)n Simple_repeat Simple_repeat 2 44 0 257 323 48 83 chr1 82458909 82459138 -199734526 - MIR SINE MIR -13 249 29 23 86 0 0 chr1 82459268 82459326 -199734338 + AT_rich Low_complexity Low_complexity 1 58 0 2214 66 0 69 chr1 82459722 82460055 -199733609 + AluY SINE Alu 1 310 -1 989 224 126 44 chr1 82461418 82461784 -199731880 - MSTD LTR MaLR 0 396 1 2376 219 125 9 chr1 82461784 82462358 -199731306 - MSTD-int LTR MaLR 0 1735 1095 5179 141 10 40 chr1 82462376 82463459 -199730205 - L1PB3 LINE L1 -1 6153 5104 1961 278 142 25 chr1 82463461 82464402 -199729262 - MSTD-int LTR MaLR -598 1053 3 892 213 112 40 chr1 82464402 82464751 -199728913 - MSTC LTR MaLR -2 426 1 1967 123 10 3 chr1 82465151 82465444 -199728220 - AluSq SINE Alu -18 295 1 234 370 37 9 chr1 82465448 82465556 -199728108 - MIR SINE MIR -74 188 78 21 36 0 0 chr1 82465674 82465702 -199727962 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 82465931 82465960 -199727704 + AT_rich Low_complexity Low_complexity 1 29 0 238 297 127 8 chr1 82466880 82466998 -199726666 + L1M4 LINE L1 757 888 -5654 1099 288 91 55 chr1 82467346 82468241 -199725423 + L1M4 LINE L1 1166 2092 -4554 1456 266 42 19 chr1 82468397 82469035 -199724629 + L1M4 LINE L1 3597 4249 -2395 1207 203 16 42 chr1 82469035 82469345 -199724319 + AluJo SINE Alu 11 312 0 326 326 58 7 chr1 82469345 82469483 -199724181 + L1M4 LINE L1 4232 4376 -2268 278 246 0 15 chr1 82469489 82469554 -199724110 - MER58A DNA MER1_type -6 218 155 294 260 10 96 chr1 82469582 82469686 -199723978 - MER58A DNA MER1_type -9 98 4 243 220 110 0 chr1 82469694 82469785 -199723879 + L1M4 LINE L1 4369 4469 -2175 380 115 0 0 chr1 82469796 82469848 -199723816 + tRNA-Arg-CGC tRNA tRNA 1 52 -24 678 258 33 0 chr1 82469848 82470030 -199723634 + L1M4 LINE L1 4462 4649 -1995 1110 311 58 27 chr1 82470325 82470934 -199722730 + HERVL40 LTR ERVL 938 1611 -3919 450 289 96 0 chr1 82470946 82471112 -199722552 + HERVL40 LTR ERVL 2535 2716 -2814 1465 287 42 11 chr1 82471223 82472013 -199721651 + HERVL40 LTR ERVL 2728 3587 -1943 * 1771 316 44 15 chr1 82472012 82472670 -199720994 + HERVL40 LTR ERVL 3984 4660 -870 1759 229 104 53 chr1 82472763 82473331 -199720333 + MER77 LTR ERV1 9 605 0 325 380 39 14 chr1 82473945 82474224 -199719440 + MER89-int LTR ERV1 6197 6482 -319 * 818 265 73 5 chr1 82474133 82474453 -199719211 + HERVL40 LTR ERVL 2792 5530 0 1573 248 59 27 chr1 82474453 82474893 -199718771 + LTR40b LTR ERVL 1 454 -8 22 94 0 0 chr1 82475069 82475133 -199718531 + AT_rich Low_complexity Low_complexity 1 64 0 36 40 0 0 chr1 82475348 82475398 -199718266 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 82476376 82476399 -199717265 + AT_rich Low_complexity Low_complexity 1 23 0 1971 107 3 33 chr1 82476579 82476878 -199716786 - AluSc SINE Alu -4 305 16 224 368 71 7 chr1 82476980 82477135 -199716529 + MIR3 SINE MIR 23 187 -21 408 287 100 100 chr1 82477735 82478322 -199715342 - L2 LINE L2 0 3313 2710 1365 186 83 0 chr1 82479518 82479771 -199713893 - AluJo SINE Alu -24 288 15 1422 218 50 69 chr1 82479778 82480255 -199713409 + MER31A LTR ERV1 18 485 0 1637 196 4 14 chr1 82481813 82482123 -199711541 - MLT1A1 LTR MaLR -2 465 57 353 301 37 73 chr1 82483094 82483230 -199710434 + L2 LINE L2 3142 3272 0 591 291 228 17 chr1 82483307 82483720 -199709944 - MLT1H1 LTR MaLR -5 544 5 1223 169 31 0 chr1 82484200 82484425 -199709239 - Tigger1 DNA MER2_type 0 2418 2187 2354 88 3 0 chr1 82484673 82484981 -199708683 - AluY SINE Alu -2 309 1 22 35 0 0 chr1 82485164 82485193 -199708471 + AT_rich Low_complexity Low_complexity 1 29 0 215 245 0 0 chr1 82486439 82486492 -199707172 + (TAA)n Simple_repeat Simple_repeat 2 54 0 446 241 0 0 chr1 82486638 82486746 -199706918 - FLAM_A SINE Alu 0 142 35 239 379 35 28 chr1 82486751 82486896 -199706768 - MIR SINE MIR -116 146 1 202 333 43 43 chr1 82487173 82487290 -199706374 - L2 LINE L2 -239 3033 2917 222 370 54 0 chr1 82487544 82487636 -199706028 + MIR SINE MIR 49 145 -117 23 0 0 0 chr1 82487652 82487675 -199705989 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 82488074 82488103 -199705561 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 82489097 82489120 -199704544 + AT_rich Low_complexity Low_complexity 1 23 0 477 328 58 0 chr1 82491201 82491375 -199702289 - MIR SINE MIR -64 198 15 1669 133 74 0 chr1 82491631 82491902 -199701762 - LTR57 LTR ERVL -120 291 1 1168 126 26 25 chr1 82492699 82492974 -199700690 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr1 82492974 82493002 -199700662 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 82493031 82493067 -199700597 + AT_rich Low_complexity Low_complexity 1 36 0 1549 209 68 18 chr1 82493974 82494357 -199699307 + LTR52 LTR ERVL 11 412 -9 3422 118 24 4 chr1 82494593 82495094 -199698570 - MER9 LTR ERVK 0 511 1 321 221 63 47 chr1 82497035 82497162 -199696502 - MIR SINE MIR -49 213 85 489 110 0 0 chr1 82498462 82498535 -199695129 + (CA)n Simple_repeat Simple_repeat 2 74 0 302 322 0 0 chr1 82498538 82498628 -199695036 - L1MC4 LINE L1 -1339 6703 6614 6005 155 24 11 chr1 82498779 82500337 -199693327 - L1MA3 LINE L1 0 6305 4727 423 291 72 46 chr1 82500403 82500709 -199692955 - L1ME4a LINE L1 -103 6018 5705 394 384 14 18 chr1 82501124 82501343 -199692321 + MLT1K LTR MaLR 25 242 -346 2333 83 0 3 chr1 82501606 82501906 -199691758 - AluY SINE Alu -12 299 1 192 371 80 28 chr1 82502768 82502981 -199690683 + L2 LINE L2 2439 2662 -652 31 44 0 0 chr1 82503096 82503141 -199690523 + AT_rich Low_complexity Low_complexity 1 45 0 1961 112 0 8 chr1 82503355 82503622 -199690042 + AluSq SINE Alu 3 267 -46 484 335 16 41 chr1 82504028 82504270 -199689394 + MIR SINE MIR 15 250 -12 306 315 112 28 chr1 82504890 82505033 -199688631 + MIR3 SINE MIR 15 169 -39 229 357 123 6 chr1 82505095 82505266 -199688398 + MIR SINE MIR 67 257 -5 5836 138 6 14 chr1 82505401 82506355 -199687309 - L1MA3 LINE L1 -2 6303 5357 5278 209 31 45 chr1 82506342 82508754 -199684910 - L1 LINE L1 -2302 5263 3024 * 2170 163 41 31 chr1 82508755 82509301 -199684363 + MLT2A2 LTR ERVL 1 554 0 16442 172 39 7 chr1 82509301 82512219 -199681445 - L1 LINE L1 -4538 3027 16 368 312 0 9 chr1 82512231 82512340 -199681324 - L2 LINE L2 -5 3308 3201 2795 139 9 5 chr1 82512441 82512866 -199680798 - MER57B LTR ERV1 -7 427 1 998 128 12 1 chr1 82512866 82513100 -199680564 - MER57B-int LTR ERV1 0 7537 7274 677 171 24 8 chr1 82513100 82513223 -199680441 - LTR54B LTR ERV1 -369 129 5 12133 120 34 1 chr1 82513223 82515009 -199678655 - MER57B-int LTR ERV1 -386 7151 5307 4109 159 68 63 chr1 82515000 82516027 -199677637 - MER57B-int LTR ERV1 -1905 4041 3010 * 232 26 26 26 chr1 82516031 82516069 -199677595 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 13654 34 0 1 chr1 82516071 82518464 -199675200 - L1PA3 LINE L1 -18 6137 3744 1848 51 4 0 chr1 82518464 82518700 -199674964 + L1PA3 LINE L1 3489 3725 -2421 2895 159 69 26 chr1 82518700 82519935 -199673729 - MER57B-int LTR ERV1 -2230 3825 1371 * 3093 141 71 11 chr1 82519925 82520624 -199673040 - MER57B-int LTR ERV1 -4810 1136 288 * 4285 141 20 3 chr1 82520621 82521282 -199672382 - MER57B-int LTR ERV1 -6865 672 1 2744 146 5 0 chr1 82521282 82521714 -199671950 - MER57B LTR ERV1 0 434 1 319 335 54 79 chr1 82521740 82522245 -199671419 - L2 LINE L2 -218 3054 2565 300 324 270 5 chr1 82522290 82522494 -199671170 - MIR SINE MIR -1 261 4 5946 115 6 1 chr1 82522687 82524100 -199669564 + L1PA14 LINE L1 4718 6160 -1 283 379 55 35 chr1 82524515 82524948 -199668716 - L2 LINE L2 -1895 1419 978 243 0 0 0 chr1 82524951 82524978 -199668686 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 258 345 163 39 chr1 82525022 82525457 -199668207 - L2 LINE L2 -2451 863 375 1626 274 40 46 chr1 82525616 82526241 -199667423 + L1MEc LINE L1 9 629 -5767 694 175 73 0 chr1 82526247 82526384 -199667280 + MSTD LTR MaLR 1 147 -249 679 183 26 59 chr1 82526385 82526538 -199667126 + MSTD LTR MaLR 248 395 -1 1258 225 81 51 chr1 82526538 82527071 -199666593 + L1MEc LINE L1 634 1182 -5214 3538 266 95 19 chr1 82527086 82528141 -199665523 + L1MEc LINE L1 1315 2289 -3926 1433 206 65 69 chr1 82528141 82528645 -199665019 + MLT1D LTR MaLR 1 502 -3 3538 266 95 19 chr1 82528645 82530046 -199663618 + L1MEc LINE L1 2289 3934 -2281 815 309 99 61 chr1 82530578 82531124 -199662540 + L2 LINE L2 642 1220 -2094 7620 29 0 0 chr1 82531124 82532226 -199661438 + L1PA4 LINE L1 5050 6152 -3 815 309 99 61 chr1 82532226 82532355 -199661309 + L2 LINE L2 1220 1343 -1971 418 323 32 0 chr1 82532479 82532637 -199661027 + L2 LINE L2 2716 2878 -436 637 216 102 92 chr1 82532651 82533063 -199660601 - L1MC5 LINE L1 -911 7050 6635 559 293 75 19 chr1 82533067 82533279 -199660385 + L2 LINE L2 2891 3114 -199 830 201 11 21 chr1 82533433 82533622 -199660042 + L1MC2 LINE L1 5954 6140 -204 * 24537 140 46 21 chr1 82533620 82539787 -199653877 + L1PA7 LINE L1 301 6470 0 1714 178 65 11 chr1 82539998 82540353 -199653311 + THE1C LTR MaLR 2 375 0 917 157 10 49 chr1 82541353 82541490 -199652174 + L1MA8 LINE L1 6069 6197 -94 2779 132 9 5 chr1 82541490 82541916 -199651748 + MSTA LTR MaLR 1 428 0 917 157 10 49 chr1 82541916 82541982 -199651682 + L1MA8 LINE L1 6197 6264 -27 194 346 131 9 chr1 82542026 82542133 -199651531 - L2 LINE L2 -605 2709 2590 24 67 0 0 chr1 82543130 82543175 -199650489 + AT_rich Low_complexity Low_complexity 1 45 0 1418 224 41 24 chr1 82543341 82543680 -199649984 - MLT1A1 LTR MaLR 0 365 21 6437 163 25 7 chr1 82544107 82546331 -199647333 + L1PB1 LINE L1 3882 6150 -1 269 211 0 0 chr1 82546342 82546394 -199647270 + L2 LINE L2 3261 3312 -1 294 91 15 30 chr1 82546716 82546782 -199646882 + (GAAA)n Simple_repeat Simple_repeat 4 68 0 210 271 17 17 chr1 82548222 82548281 -199645383 - L2 LINE L2 -643 2671 2613 3222 160 55 20 chr1 82548426 82549021 -199644643 - LTR35 LTR ERV1 -1 617 2 823 310 74 22 chr1 82549153 82549517 -199644147 + LTR16C LTR ERVL 103 485 -6 568 84 0 0 chr1 82551458 82551541 -199642123 - Alu SINE Alu -2 308 226 189 196 0 0 chr1 82552378 82552424 -199641240 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 27 49 0 0 chr1 82552642 82552683 -199640981 + AT_rich Low_complexity Low_complexity 1 41 0 457 132 0 22 chr1 82552818 82552909 -199640755 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 237 262 19 68 chr1 82553577 82553680 -199639984 + L2 LINE L2 2976 3073 -199 1828 208 3 16 chr1 82553682 82554048 -199639616 + MLT1A1 LTR MaLR 1 361 -4 2062 127 3 0 chr1 82554209 82554523 -199639141 + AluSq SINE Alu 1 315 0 750 217 55 92 chr1 82555335 82555750 -199637914 + L1MC5 LINE L1 7109 7508 -453 1275 220 35 52 chr1 82555848 82556193 -199637471 - MLT2C1 LTR ERVL -53 344 6 318 241 12 0 chr1 82556228 82556311 -199637353 - L1MC5 LINE L1 -1229 6732 6649 754 201 137 67 chr1 82559663 82559962 -199633702 + L1MC5 LINE L1 6909 7228 -733 645 12 0 0 chr1 82560222 82560302 -199633362 + AluYa5/8 SINE Alu 228 307 -4 27 0 0 0 chr1 82562126 82562153 -199631511 + AT_rich Low_complexity Low_complexity 1 27 0 225 320 40 40 chr1 82563522 82563647 -199630017 - MIR SINE MIR -47 215 91 999 277 37 52 chr1 82564708 82565170 -199628494 - ERVL-B1 LTR ERVL -5307 457 3 205 167 0 0 chr1 82565174 82565210 -199628454 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 1818 219 21 58 chr1 82565229 82565662 -199628002 - MLT2B1 LTR ERVL -101 419 3 1363 153 83 0 chr1 82565664 82565918 -199627746 - L1MC/D LINE L1 -535 6078 5804 297 257 71 0 chr1 82565917 82566030 -199627634 - L1MC/D LINE L1 -1136 5290 5170 * 1043 224 50 0 chr1 82566044 82566343 -199627321 - L1MC/D LINE L1 -1377 5049 4736 263 115 0 49 chr1 82566539 82566600 -199627064 - L1MA7 LINE L1 0 6291 6234 * 395 270 43 27 chr1 82566588 82566773 -199626891 - L1MC/D LINE L1 -1673 4753 4566 185 214 89 0 chr1 82566820 82566876 -199626788 - L2 LINE L2 -458 2856 2796 1743 173 74 0 chr1 82566876 82567200 -199626464 - MER7A DNA MER2_type 0 346 1 1873 231 10 20 chr1 82567210 82567812 -199625852 - L1MC/D LINE L1 -2881 3545 2950 * 2710 177 64 11 chr1 82567810 82568630 -199625034 - L1MCa LINE L1 -4499 1927 987 1526 216 97 79 chr1 82568633 82569141 -199624523 + MLT1E LTR MaLR 57 573 -20 229 256 0 110 chr1 82570925 82571007 -199622657 - MIR3 SINE MIR 0 208 136 2179 134 0 10 chr1 82571867 82572181 -199621483 + AluSx SINE Alu 1 311 -1 34 0 0 0 chr1 82573319 82573353 -199620311 + AT_rich Low_complexity Low_complexity 1 34 0 2103 252 30 50 chr1 82573400 82574000 -199619664 + MER77 LTR ERV1 18 605 0 23 0 0 0 chr1 82575239 82575262 -199618402 + AT_rich Low_complexity Low_complexity 1 23 0 297 324 225 6 chr1 82575626 82575808 -199617856 + MIR SINE MIR 30 251 -11 432 326 11 34 chr1 82576545 82576723 -199616941 - LTR40a LTR ERVL -118 401 228 318 202 202 32 chr1 82576851 82576975 -199616689 - LTR40a LTR ERVL -372 147 3 2306 90 7 0 chr1 82577367 82577666 -199615998 + AluY SINE Alu 1 301 -10 51 51 0 0 chr1 82577909 82577988 -199615676 + AT_rich Low_complexity Low_complexity 1 79 0 2304 37 0 4 chr1 82578316 82578589 -199615075 - AluY SINE Alu -39 272 1 322 230 14 0 chr1 82578903 82578977 -199614687 - MIR SINE MIR -37 225 151 278 305 110 34 chr1 82579001 82579119 -199614545 + L2 LINE L2 3187 3313 0 692 43 11 0 chr1 82579602 82579694 -199613970 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 348 322 8 0 chr1 82580281 82580402 -199613262 + MER94 DNA DNA 4 125 -9 28 48 0 0 chr1 82580648 82580690 -199612974 + AT_rich Low_complexity Low_complexity 1 42 0 35 54 0 0 chr1 82580735 82580791 -199612873 + AT_rich Low_complexity Low_complexity 1 56 0 318 260 26 0 chr1 82581785 82581862 -199611802 - MIR SINE MIR -62 200 122 2491 57 0 0 chr1 82584209 82584505 -199609159 - AluY SINE Alu -15 296 1 503 256 23 47 chr1 82584590 82584762 -199608902 + MIR SINE MIR 46 213 -49 864 152 121 0 chr1 82585601 82585766 -199607898 + MER2 DNA MER2_type 1 185 -160 6559 90 16 17 chr1 82585766 82587484 -199606180 + L1PA7 LINE L1 4441 6154 0 21 36 0 0 chr1 82587652 82587680 -199605984 + AT_rich Low_complexity Low_complexity 1 28 0 811 153 33 20 chr1 82587683 82587833 -199605831 + MER2 DNA MER2_type 174 325 -20 524 257 58 46 chr1 82588141 82588382 -199605282 - L2 LINE L2 0 3313 3070 381 43 0 0 chr1 82588499 82588546 -199605118 + (TG)n Simple_repeat Simple_repeat 1 47 0 620 342 50 27 chr1 82588623 82589100 -199604564 - L2 LINE L2 -1069 2245 1758 225 244 174 12 chr1 82589350 82589436 -199604228 + L2 LINE L2 3173 3272 0 798 309 42 44 chr1 82590803 82591398 -199602266 - L1M4 LINE L1 -2043 4103 3510 41944 38 23 2 chr1 82591399 82595709 -199597955 - L1PA2 LINE L1 0 6155 1675 2541 30 0 10 chr1 82595709 82596010 -199597654 + AluYa5 SINE Alu 1 298 -13 41944 38 23 2 chr1 82596010 82597722 -199595942 - L1PA2 LINE L1 -4480 1675 1 263 148 0 56 chr1 82597765 82597819 -199595845 + L1M4 LINE L1 3197 3247 -2899 1105 237 0 91 chr1 82598440 82598679 -199594985 + MLT1A1 LTR MaLR 10 210 -155 3621 139 17 7 chr1 82598679 82599275 -199594389 + LTR43 LTR ERV1 1 602 0 1105 237 0 91 chr1 82599275 82599377 -199594287 + MLT1A1 LTR MaLR 210 320 -45 293 247 12 0 chr1 82599529 82599610 -199594054 + MER53 DNA DNA 2 83 -106 1594 115 0 0 chr1 82600437 82600663 -199593001 + HERVL-B3 LTR ERVL 4759 4984 -670 * 2694 159 16 25 chr1 82600646 82601161 -199592503 + HERVL-B3 LTR ERVL 5145 5654 0 1603 228 85 85 chr1 82601169 82601709 -199591955 + MLT2B3 LTR ERVL 15 554 0 24 0 0 0 chr1 82601834 82601858 -199591806 + AT_rich Low_complexity Low_complexity 1 24 0 230 216 103 31 chr1 82602230 82602327 -199591337 - MIR SINE MIR -16 246 143 243 0 0 0 chr1 82602924 82602951 -199590713 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr1 82603930 82603954 -199589710 + AT_rich Low_complexity Low_complexity 1 24 0 252 304 8 96 chr1 82604494 82604619 -199589045 - MIR SINE MIR -73 189 76 454 206 46 120 chr1 82604859 82605034 -199588630 + L2 LINE L2 3152 3313 0 190 279 38 13 chr1 82605116 82605195 -199588469 + L2 LINE L2 2811 2891 -422 203 345 0 44 chr1 82605277 82605390 -199588274 + L2 LINE L2 3154 3261 -52 245 330 38 19 chr1 82606616 82606722 -199586942 - MIR3 SINE MIR -15 193 86 28 29 0 0 chr1 82607653 82607688 -199585976 + AT_rich Low_complexity Low_complexity 1 35 0 2217 117 0 0 chr1 82608617 82608924 -199584740 + AluSx SINE Alu 6 312 0 954 204 74 120 chr1 82608924 82609291 -199584373 - MER57A LTR ERV1 -8 395 46 1169 251 146 41 chr1 82609407 82609797 -199583867 + MLT1F LTR MaLR 1 431 -111 2007 91 57 14 chr1 82609895 82610192 -199583472 + AluSg SINE Alu 1 310 0 21 36 0 0 chr1 82613580 82613608 -199580056 + AT_rich Low_complexity Low_complexity 1 28 0 1084 226 12 105 chr1 82613930 82614338 -199579326 + MLT1A2 LTR MaLR 1 370 -4 1160 306 43 34 chr1 82614991 82615458 -199578206 + MLT1H LTR MaLR 73 543 -6 293 306 56 39 chr1 82615890 82616070 -199577594 + L2 LINE L2 3131 3313 0 231 36 0 0 chr1 82616223 82616251 -199577413 + (GA)n Simple_repeat Simple_repeat 2 29 0 1536 150 79 0 chr1 82616251 82616504 -199577160 - AluSx SINE Alu -39 273 1 24 53 0 0 chr1 82616700 82616738 -199576926 + AT_rich Low_complexity Low_complexity 1 38 0 391 310 38 38 chr1 82617549 82617707 -199575957 + L2 LINE L2 2894 3051 -221 6686 129 8 7 chr1 82617920 82618688 -199574976 + L1MA3 LINE L1 5229 6001 -304 363 60 0 0 chr1 82618688 82618738 -199574926 + (TG)n Simple_repeat Simple_repeat 2 51 0 6686 129 8 7 chr1 82618738 82619044 -199574620 + L1MA3 LINE L1 6001 6305 0 240 111 0 0 chr1 82620591 82620627 -199573037 + (TA)n Simple_repeat Simple_repeat 1 36 0 26 0 0 0 chr1 82621190 82621216 -199572448 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr1 83021333 83021360 -199172304 + AT_rich Low_complexity Low_complexity 1 27 0 254 275 96 64 chr1 83021698 83022342 -199171322 + L1M4 LINE L1 2312 2976 -3170 2129 237 14 20 chr1 83022655 83023149 -199170515 - LTR53 LTR ERVL -22 497 7 33 25 0 0 chr1 83023192 83023232 -199170432 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr1 83024262 83024305 -199169359 + AT_rich Low_complexity Low_complexity 1 43 0 305 295 85 8 chr1 83024415 83024544 -199169120 - L2 LINE L2 0 3313 3175 22 35 0 0 chr1 83024664 83024693 -199168971 + AT_rich Low_complexity Low_complexity 1 29 0 262 293 8 32 chr1 83024706 83024829 -199168835 + L1MCa LINE L1 6 125 -6301 * 8778 223 68 22 chr1 83024826 83027281 -199166383 + L1MC3 LINE L1 5160 7733 -52 2763 172 22 11 chr1 83027281 83027828 -199165836 + LTR38 LTR ERV1 3 555 -1 8778 223 68 22 chr1 83027828 83027877 -199165787 + L1MC3 LINE L1 7733 7778 -7 291 305 127 1 chr1 83028030 83028283 -199165381 + L1ME LINE L1 5333 5614 -550 795 223 78 8 chr1 83028285 83028541 -199165123 + Charlie1 DNA MER1_type 2485 2758 -3 24 77 0 0 chr1 83028664 83028716 -199164948 + AT_rich Low_complexity Low_complexity 1 52 0 2095 145 37 0 chr1 83028867 83029218 -199164446 + THE1B LTR MaLR 1 364 0 206 222 0 0 chr1 83029486 83029522 -199164142 + polypurine Low_complexity Low_complexity 1 36 0 297 0 0 0 chr1 83030059 83030092 -199163572 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 528 239 15 0 chr1 83030095 83030225 -199163439 - FRAM SINE Alu -27 149 18 201 182 0 0 chr1 83030282 83030315 -199163349 + (TA)n Simple_repeat Simple_repeat 2 34 0 680 168 8 0 chr1 83030315 83030434 -199163230 - AluJb SINE Alu -192 120 1 378 310 78 85 chr1 83030583 83031115 -199162549 + L1MCa LINE L1 1003 1518 -4898 343 278 44 21 chr1 83031147 83031361 -199162303 + L1MCa LINE L1 1661 2149 -4278 388 279 125 14 chr1 83031368 83031591 -199162073 + L1M4 LINE L1 4177 4374 -1772 1632 116 79 0 chr1 83031591 83031666 -199161998 + AluSg1 SINE Alu 36 104 -205 258 32 0 0 chr1 83031666 83031697 -199161967 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1632 116 79 0 chr1 83031697 83031862 -199161802 + AluSg1 SINE Alu 104 295 -14 388 279 125 14 chr1 83031862 83031997 -199161667 + L1M4 LINE L1 4374 4575 -1571 530 303 36 41 chr1 83032042 83032263 -199161401 - MIR SINE MIR -42 220 1 183 204 0 0 chr1 83032333 83032382 -199161282 + (TATG)n Simple_repeat Simple_repeat 3 51 0 23 0 0 0 chr1 83032395 83032418 -199161246 + AT_rich Low_complexity Low_complexity 1 23 0 252 306 0 12 chr1 83032497 83032582 -199161082 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 1714 220 60 14 chr1 83034391 83034837 -199158827 - MLT1C LTR MaLR 0 467 1 3328 237 45 8 chr1 83035548 83036709 -199156955 - L1MB8 LINE L1 -15 6163 4967 1122 254 77 25 chr1 83036719 83037163 -199156501 + MLT1C LTR MaLR 1 467 0 2436 173 65 20 chr1 83037163 83037700 -199155964 + MLT1C-int LTR MaLR 1 561 -810 885 187 10 30 chr1 83037737 83037765 -199155899 - AluJb SINE Alu -2 310 283 2067 203 8 35 chr1 83037765 83038283 -199155381 - L1PB4 LINE L1 -1 7217 6714 885 187 10 30 chr1 83038283 83038452 -199155212 - AluJb SINE Alu -29 283 117 11968 227 33 16 chr1 83038453 83043601 -199150063 - L1PB4 LINE L1 -485 6733 1405 436 262 88 94 chr1 83043781 83044121 -199149543 - L1PB4 LINE L1 -5747 1462 1125 312 372 47 27 chr1 83044160 83044308 -199149356 - L1PB4 LINE L1 -6018 1191 1041 1396 287 45 18 chr1 83045327 83046125 -199147539 - L1MCa LINE L1 -3316 3110 2291 7364 34 14 0 chr1 83046139 83047731 -199145933 - L1PA4 LINE L1 -5 6150 4548 2242 110 0 3 chr1 83047959 83048269 -199145395 - AluY SINE Alu 0 311 3 881 312 34 31 chr1 83048270 83048885 -199144779 - L1MCa LINE L1 -4619 1809 1193 1080 250 103 45 chr1 83048901 83049602 -199144062 - L1M4c LINE L1 -4689 2270 1534 223 160 53 20 chr1 83049655 83049805 -199143859 + (TA)n Simple_repeat Simple_repeat 1 155 0 4543 282 38 25 chr1 83049805 83051236 -199142428 - L1M4c LINE L1 -5403 1456 8 607 175 91 42 chr1 83051405 83051548 -199142116 + MLT1B LTR MaLR 3 152 -222 312 188 0 0 chr1 83051552 83051616 -199142048 + CT-rich Low_complexity Low_complexity 2 65 0 706 225 6 39 chr1 83051625 83051807 -199141857 + MLT1B LTR MaLR 204 379 -11 1000 268 64 9 chr1 83052188 83052866 -199140798 + L1ME LINE L1 4856 5572 -594 455 256 56 10 chr1 83052913 83053108 -199140556 + L1ME3A LINE L1 5143 5346 -800 237 258 81 70 chr1 83053156 83053342 -199140322 + L1ME3A LINE L1 5419 5606 -558 1562 92 0 68 chr1 83053377 83053626 -199140038 + AluY SINE Alu 1 232 -79 1153 269 58 44 chr1 83053627 83054077 -199139587 + MLT1E1 LTR MaLR 199 654 0 372 302 35 50 chr1 83054079 83054281 -199139383 + L1ME3A LINE L1 5965 6163 -7 24 32 0 0 chr1 83055283 83055314 -199138350 + AT_rich Low_complexity Low_complexity 1 31 0 4723 188 36 9 chr1 83055355 83056344 -199137320 - L1MA7 LINE L1 -2 6289 5274 749 101 9 0 chr1 83056344 83056453 -199137211 - MSTB LTR MaLR 0 426 317 192 80 20 40 chr1 83056460 83056510 -199137154 + (TATAA)n Simple_repeat Simple_repeat 4 52 0 323 238 333 0 chr1 83056510 83056636 -199137028 - MER4-int LTR ERV1 -431 4505 4338 * 2213 214 86 84 chr1 83056630 83057766 -199135898 - MER4-int LTR ERV1 -1218 5094 3963 1982 131 24 0 chr1 83057766 83058057 -199135607 - AluSg SINE Alu -12 298 1 2213 214 86 84 chr1 83058057 83058635 -199135029 - MER4-int LTR ERV1 -2349 3963 2480 473 226 49 43 chr1 83058685 83058849 -199134815 - MER4-int LTR ERV1 -2868 3730 3566 225 0 0 0 chr1 83058849 83058874 -199134790 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 907 211 40 96 chr1 83059105 83059690 -199133974 - MER4-int LTR ERV1 -3071 3527 2911 1792 138 100 32 chr1 83059690 83060031 -199133633 + THE1B LTR MaLR 1 364 0 11451 95 5 0 chr1 83060031 83061603 -199132061 + THE1B-int LTR MaLR 1 1580 0 1835 136 68 37 chr1 83061603 83061956 -199131708 + THE1B LTR MaLR 1 364 0 907 211 40 96 chr1 83061956 83062012 -199131652 - MER4-int LTR ERV1 -3684 2914 1720 546 255 5 60 chr1 83062022 83062238 -199131426 - MER4-int LTR ERV1 -6371 1749 1546 1326 188 55 30 chr1 83062342 83062703 -199130961 - MER4-int LTR ERV1 -6578 1542 1173 328 258 65 16 chr1 83062952 83063076 -199130588 - L2 LINE L2 -2 3311 3182 31 76 0 0 chr1 83064114 83064180 -199129484 + AT_rich Low_complexity Low_complexity 1 66 0 229 259 162 49 chr1 83064423 83064608 -199129056 + MIR SINE MIR 50 255 -7 22 0 0 0 chr1 83064644 83064666 -199128998 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 83064833 83064876 -199128788 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr1 83065396 83065419 -199128245 + AT_rich Low_complexity Low_complexity 1 23 0 231 146 0 0 chr1 83065750 83065791 -199127873 + (CA)n Simple_repeat Simple_repeat 1 41 0 432 51 0 0 chr1 83066110 83066169 -199127495 + (TG)n Simple_repeat Simple_repeat 2 60 0 181 309 0 36 chr1 83066579 83066634 -199127030 + L2 LINE L2 3244 3296 -17 194 366 66 0 chr1 83068091 83068192 -199125472 + MIR SINE MIR 34 138 -102 21 0 0 0 chr1 83068923 83068944 -199124720 + AT_rich Low_complexity Low_complexity 1 21 0 431 264 88 29 chr1 83069447 83069686 -199123978 - MER112 DNA MER1_type -1 259 7 210 37 0 0 chr1 83070690 83070717 -199122947 + (GA)n Simple_repeat Simple_repeat 2 28 0 369 316 61 32 chr1 83070950 83071359 -199122305 + HAL1b LINE L1 102 1552 -829 999 267 24 18 chr1 83072387 83072720 -199120944 + L1ME1 LINE L1 5699 6033 -133 1439 179 11 115 chr1 83072730 83072886 -199120778 + MLT1B LTR MaLR 1 172 -218 2577 115 0 3 chr1 83072886 83073251 -199120413 - THE1B LTR MaLR 0 364 1 1439 179 11 115 chr1 83073251 83073478 -199120186 + MLT1B LTR MaLR 172 336 -54 189 0 0 0 chr1 83073478 83073499 -199120165 + (TTAGGG)n Simple_repeat Simple_repeat 4 24 0 1439 179 11 115 chr1 83073499 83073549 -199120115 + MLT1B LTR MaLR 336 390 0 341 236 67 0 chr1 83073549 83073638 -199120026 + L1ME1 LINE L1 6039 6133 -33 2215 237 49 69 chr1 83073723 83074062 -199119602 + L1ME1 LINE L1 5314 5658 -508 1674 194 61 6 chr1 83074062 83074408 -199119256 - MLT1A1 LTR MaLR 0 365 1 2215 237 49 69 chr1 83074408 83074928 -199118736 + L1ME1 LINE L1 5658 6156 -10 21 36 0 0 chr1 83075314 83075342 -199118322 + AT_rich Low_complexity Low_complexity 1 28 0 246 182 18 0 chr1 83075377 83075432 -199118232 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 835 293 30 42 chr1 83076611 83076946 -199116718 + L1MC/D LINE L1 32 362 -6034 192 125 0 0 chr1 83076963 83076995 -199116669 + (GA)n Simple_repeat Simple_repeat 1 32 0 1763 269 58 31 chr1 83076997 83077800 -199115864 + L1MC/D LINE L1 347 1171 -5225 520 248 68 103 chr1 83077830 83078200 -199115464 + L1MC/D LINE L1 2546 2903 -3312 1956 119 3 29 chr1 83078200 83078511 -199115153 + AluSc SINE Alu 1 303 -6 520 248 68 103 chr1 83078511 83078536 -199115128 + L1MC/D LINE L1 2903 2927 -3288 866 226 101 20 chr1 83078690 83078996 -199114668 + L1MC/D LINE L1 4610 4940 -1275 1300 268 35 33 chr1 83079079 83079394 -199114270 + MLT2D LTR ERVL 48 366 -48 414 0 0 0 chr1 83079394 83079440 -199114224 + (CA)n Simple_repeat Simple_repeat 1 46 0 1300 268 35 33 chr1 83079440 83079490 -199114174 + MLT2D LTR ERVL 366 414 0 1362 243 74 29 chr1 83079496 83079917 -199113747 + L1MC/D LINE L1 4947 5348 -1279 2199 110 0 0 chr1 83079917 83080217 -199113447 + AluSc SINE Alu 1 300 -9 1362 243 74 29 chr1 83080217 83080684 -199112980 + L1MC/D LINE L1 5348 5884 -743 428 181 53 152 chr1 83080682 83080925 -199112739 - L1ME1 LINE L1 -137 6029 5811 * 365 209 0 47 chr1 83080938 83081086 -199112578 + CT-rich Low_complexity Low_complexity 3 143 0 236 312 50 20 chr1 83081463 83081665 -199111999 + L1M4 LINE L1 1442 1649 -4893 852 351 28 9 chr1 83081751 83082176 -199111488 - L1MEc LINE L1 -5920 476 44 578 257 18 29 chr1 83083122 83083293 -199110371 - MIR SINE MIR -7 255 87 441 292 17 0 chr1 83083862 83083982 -199109682 + L2 LINE L2 3192 3313 0 32 26 0 0 chr1 83084958 83084997 -199108667 + AT_rich Low_complexity Low_complexity 1 39 0 2358 53 0 0 chr1 83087613 83087921 -199105743 + AluY SINE Alu 1 308 0 355 229 26 21 chr1 83087923 83088074 -199105590 + MER41B LTR ERV1 237 425 -210 354 215 0 0 chr1 83088749 83088828 -199104836 + (TA)n Simple_repeat Simple_repeat 2 80 0 330 226 0 94 chr1 83088828 83088934 -199104730 - L1MC4 LINE L1 -1333 6709 6614 21 57 0 0 chr1 83088959 83088994 -199104670 + AT_rich Low_complexity Low_complexity 1 35 0 239 324 19 0 chr1 83088998 83089106 -199104558 + MER103 DNA DNA 14 123 -43 27 49 0 0 chr1 83089137 83089178 -199104486 + AT_rich Low_complexity Low_complexity 1 41 0 1503 315 56 55 chr1 83090081 83090987 -199102677 + L2 LINE L2 1386 2292 -1022 1641 231 52 51 chr1 83091002 83091675 -199101989 + L1ME LINE L1 5115 5788 -378 271 298 180 45 chr1 83091678 83091856 -199101808 + L2 LINE L2 2420 2621 -693 405 233 11 0 chr1 83091860 83091950 -199101714 - Zaphod DNA AcHobo -4 4027 3937 696 206 46 23 chr1 83092193 83092368 -199101296 - MER45B DNA AcHobo 0 1040 862 704 294 64 10 chr1 83092428 83092632 -199101032 - MER45B DNA AcHobo -825 215 1 557 345 43 20 chr1 83092845 83092880 -199100784 + L2 LINE L2 2619 2652 -662 2181 136 45 14 chr1 83092880 83093233 -199100431 + THE1B LTR MaLR 1 364 0 557 345 43 20 chr1 83093233 83093498 -199100166 + L2 LINE L2 2652 2926 -388 1762 218 59 21 chr1 83095269 83095610 -199098054 - LTR54B LTR ERV1 -2 496 130 4839 105 1 3 chr1 83095610 83096296 -199097368 - L1PA11 LINE L1 -1 6173 5489 1762 218 59 21 chr1 83096296 83096432 -199097232 - LTR54B LTR ERV1 -368 130 1 481 223 0 10 chr1 83096432 83096535 -199097129 - MER57-int LTR ERV1 -393 7144 7043 865 240 143 23 chr1 83096562 83096820 -199096844 - MLT1E2 LTR MaLR -337 289 1 2303 71 27 0 chr1 83097251 83097546 -199096118 - AluY SINE Alu -8 303 1 280 291 100 36 chr1 83097550 83097660 -199096004 - MER20B DNA MER1_type -604 179 63 1804 138 31 7 chr1 83097698 83097987 -199095677 + MSTB LTR MaLR 1 296 -130 3856 151 87 3 chr1 83099339 83100014 -199093650 - MER44D DNA MER2_type 0 605 2 2370 183 148 4 chr1 83100021 83100547 -199093117 + MER6A DNA MER2_type 4 605 0 23 33 0 0 chr1 83100725 83100755 -199092909 + AT_rich Low_complexity Low_complexity 1 30 0 2556 105 3 0 chr1 83101041 83101393 -199092271 - THE1A LTR MaLR -2 353 1 277 178 0 0 chr1 83101897 83101942 -199091722 - MER94 DNA DNA -88 46 2 23 54 0 0 chr1 83102141 83102178 -199091486 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 83103168 83103189 -199090475 + AT_rich Low_complexity Low_complexity 1 21 0 1740 155 12 111 chr1 83103418 83103824 -199089840 + MER47A DNA MER2_type 1 366 0 239 336 88 0 chr1 83103859 83103972 -199089692 - MIR3 SINE MIR -30 178 56 191 269 223 15 chr1 83103986 83104116 -199089548 - MIR SINE MIR -10 252 96 3999 106 78 7 chr1 83104212 83104828 -199088836 + PABL_A LTR ERV1 1 660 0 186 43 0 0 chr1 83105391 83105414 -199088250 + (TTG)n Simple_repeat Simple_repeat 2 24 0 772 242 22 16 chr1 83105443 83105625 -199088039 - MER5A DNA MER1_type 0 189 7 1214 220 71 24 chr1 83105949 83106245 -199087419 - MLT1A2 LTR MaLR -64 310 1 1251 193 77 7 chr1 83106245 83106530 -199087134 - L1MC3 LINE L1 -82 7703 7399 375 155 24 24 chr1 83106531 83106615 -199087049 - L1M4 LINE L1 -858 5288 5205 224 59 29 0 chr1 83106616 83106650 -199087014 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 794 199 7 0 chr1 83106650 83106796 -199086868 - FAM SINE Alu -29 156 10 399 283 29 24 chr1 83106799 83107004 -199086660 - L1M4 LINE L1 -971 5175 4970 652 168 10 22 chr1 83107039 83107349 -199086315 + CT-rich Low_complexity Low_complexity 1 306 0 2686 269 67 25 chr1 83107349 83108446 -199085218 - L1M4 LINE L1 -1199 4947 3805 25 31 0 0 chr1 83108866 83108898 -199084766 + AT_rich Low_complexity Low_complexity 1 32 0 2165 113 0 0 chr1 83109302 83109594 -199084070 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 83109594 83109624 -199084040 + AT_rich Low_complexity Low_complexity 1 30 0 664 301 29 0 chr1 83109828 83110001 -199083663 + L2 LINE L2 2626 2803 -511 485 211 55 0 chr1 83110001 83110110 -199083554 - MLT1A1 LTR MaLR 0 374 260 1481 154 0 0 chr1 83110114 83110335 -199083329 + AluSx SINE Alu 5 225 -87 315 0 0 0 chr1 83110351 83110386 -199083278 + (A)n Simple_repeat Simple_repeat 1 35 0 690 196 114 78 chr1 83110396 83110641 -199083023 - MLT1A1 LTR MaLR -111 254 1 626 301 158 25 chr1 83110648 83111097 -199082567 + L2 LINE L2 2805 3313 0 190 152 15 0 chr1 83113205 83113242 -199080422 - MIR SINE MIR -141 121 85 290 341 79 16 chr1 83113975 83114101 -199079563 - L2 LINE L2 -3 3269 3136 185 248 124 38 chr1 83114110 83114215 -199079449 - L2 LINE L2 -4 3309 3196 1549 166 0 49 chr1 83114222 83114530 -199079134 - AluJo SINE Alu -19 293 1 1358 246 53 18 chr1 83115790 83116303 -199077361 - L1ME2 LINE L1 -330 5834 5304 21 0 0 0 chr1 83117212 83117233 -199076431 + AT_rich Low_complexity Low_complexity 1 21 0 193 326 163 0 chr1 83117258 83117344 -199076320 - MIR SINE MIR -79 183 84 2265 95 7 0 chr1 83117886 83118182 -199075482 - AluSp SINE Alu -15 298 1 432 320 13 7 chr1 83118375 83118525 -199075139 + LTR33 LTR ERVL 69 219 -302 287 208 54 8 chr1 83119131 83119261 -199074403 + (TA)n Simple_repeat Simple_repeat 2 137 0 249 309 41 21 chr1 83119760 83119857 -199073807 - HAL1 LINE L1 -589 1918 1820 1136 222 59 3 chr1 83119972 83120278 -199073386 + L1ME1 LINE L1 5556 5878 -288 338 313 22 30 chr1 83120698 83120832 -199072832 - MIR SINE MIR -29 233 101 21 0 0 0 chr1 83121730 83121751 -199071913 + AT_rich Low_complexity Low_complexity 1 21 0 1964 149 7 0 chr1 83122347 83122643 -199071021 - AluSx SINE Alu -14 298 1 2721 175 14 4 chr1 83122682 83123174 -199070490 + LOR1a LTR ERV1 1 497 0 221 371 0 0 chr1 83123197 83123259 -199070405 + MER5A DNA MER1_type 128 189 0 7778 85 8 9 chr1 83123897 83124955 -199068709 + MER11C LTR ERVK 1 1057 -14 4100 204 42 71 chr1 83125142 83126265 -199067399 + L1MC3 LINE L1 6695 7784 -1 1321 201 11 21 chr1 83127007 83127286 -199066378 + AluJo SINE Alu 13 288 -24 23 0 0 0 chr1 83128887 83128910 -199064754 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 83128934 83128955 -199064709 + AT_rich Low_complexity Low_complexity 1 21 0 218 274 0 36 chr1 83129821 83129905 -199063759 - MIR SINE MIR -109 153 73 1200 68 0 19 chr1 83129918 83130080 -199063584 + AluSg/x SINE Alu 154 312 0 1859 160 10 0 chr1 83130612 83130906 -199062758 - AluJb SINE Alu -15 297 1 2410 223 14 21 chr1 83131333 83131844 -199061820 + MLT2B3 LTR ERVL 1 507 -47 511 210 140 6 chr1 83131944 83132101 -199061563 - MER96B DNA MER1_type? -239 178 1 305 309 0 0 chr1 83132105 83132189 -199061475 - MIR SINE MIR -110 152 69 212 394 122 18 chr1 83133116 83133337 -199060327 + L2 LINE L2 2838 3081 -191 511 345 18 22 chr1 83133678 83133907 -199059757 + MLT1J LTR MaLR 85 312 -199 601 237 0 0 chr1 83134131 83134262 -199059402 + L1PB4 LINE L1 6026 6156 0 280 319 31 25 chr1 83135667 83135830 -199057834 - L1ME1 LINE L1 -55 6111 5948 1422 203 46 47 chr1 83135955 83136279 -199057385 + L1MC1 LINE L1 4877 5194 -966 2308 99 0 0 chr1 83136279 83136583 -199057081 + AluY SINE Alu 1 304 -7 1422 203 46 47 chr1 83136583 83136772 -199056892 + L1MC1 LINE L1 5194 5382 -778 4046 172 19 5 chr1 83136848 83137591 -199056073 + L1MC1 LINE L1 5572 6324 -9 965 181 78 92 chr1 83137591 83137795 -199055869 - MSTA LTR MaLR 0 428 223 204 40 0 0 chr1 83137795 83137820 -199055844 + (GA)n Simple_repeat Simple_repeat 1 25 0 965 181 78 92 chr1 83137820 83137850 -199055814 - MSTA LTR MaLR -205 223 194 2093 137 0 3 chr1 83137850 83138157 -199055507 - AluSq SINE Alu -7 306 1 965 181 78 92 chr1 83138157 83138202 -199055462 - MSTA LTR MaLR -234 194 152 21 36 0 0 chr1 83138894 83138922 -199054742 + AT_rich Low_complexity Low_complexity 1 28 0 67 0 0 0 chr1 83139172 83139239 -199054425 + AT_rich Low_complexity Low_complexity 1 67 0 553 287 84 39 chr1 83139698 83140008 -199053656 + L1ME2 LINE L1 293 616 -6030 507 315 25 22 chr1 83140134 83140410 -199053254 + L1ME2 LINE L1 820 1096 -5446 2684 129 22 9 chr1 83140444 83140893 -199052771 + L1PA15 LINE L1 5708 6162 -3 436 244 111 60 chr1 83141202 83141669 -199051995 + L1ME4a LINE L1 5614 6104 -17 282 281 91 29 chr1 83141958 83142232 -199051432 + L1ME2 LINE L1 2432 2722 -4103 870 288 47 80 chr1 83142295 83142551 -199051113 + L1ME2 LINE L1 2799 3062 -3582 2104 108 20 3 chr1 83142551 83142847 -199050817 - AluSq SINE Alu -12 301 1 870 288 47 80 chr1 83142847 83143377 -199050287 + L1ME2 LINE L1 3062 3559 -3085 * 935 283 92 2 chr1 83143370 83143770 -199049894 + L1ME2 LINE L1 4980 5415 -1229 1267 256 74 15 chr1 83143774 83144165 -199049499 + LTR52 LTR ERVL 1 414 -7 307 287 44 22 chr1 83144167 83144303 -199049361 + L1ME2 LINE L1 5413 5551 -1093 397 221 194 42 chr1 83144603 83144820 -199048844 + L1ME2 LINE L1 6413 6662 0 231 164 15 75 chr1 83144822 83144836 -199048828 + A-rich Low_complexity Low_complexity 2 15 -49 1942 148 20 0 chr1 83144836 83145140 -199048524 + AluSx SINE Alu 1 310 -2 231 164 15 75 chr1 83145140 83145192 -199048472 + A-rich Low_complexity Low_complexity 15 64 0 598 264 60 6 chr1 83145748 83145915 -199047749 + L1ME1 LINE L1 5953 6128 -38 906 241 46 58 chr1 83146322 83147433 -199046231 - L1ME LINE L1 -3335 2880 1641 599 89 0 0 chr1 83147711 83147801 -199045863 - L1P LINE L1 -2230 3916 3827 * 3187 51 0 0 chr1 83147786 83148180 -199045484 + L1P LINE L1 3438 3831 -2315 761 283 32 77 chr1 83148178 83148747 -199044917 - L1ME LINE L1 -5143 1062 520 * 347 309 82 92 chr1 83148747 83149041 -199044623 - L1ME LINE L1 -5589 616 326 21 0 0 0 chr1 83150117 83150138 -199043526 + AT_rich Low_complexity Low_complexity 1 21 0 1224 230 71 9 chr1 83150642 83151001 -199042663 - L1ME LINE L1 -562 5604 5233 10300 112 31 11 chr1 83151006 83152538 -199041126 + THE1B-int LTR MaLR 19 1580 0 2121 118 27 21 chr1 83152538 83152876 -199040788 + THE1B LTR MaLR 1 340 -24 974 310 12 30 chr1 83152957 83153454 -199040210 - L1ME LINE L1 -960 5186 4699 25 31 0 0 chr1 83153555 83153587 -199040077 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 83154187 83154209 -199039455 + AT_rich Low_complexity Low_complexity 1 22 0 1008 244 113 54 chr1 83154242 83154568 -199039096 + MLT2B2 LTR ERVL 103 457 -58 429 43 29 14 chr1 83154568 83154637 -199039027 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 1008 244 113 54 chr1 83154637 83154700 -199038964 + MLT2B2 LTR ERVL 457 515 0 252 268 0 0 chr1 83154899 83154970 -199038694 + L1ME LINE L1 5725 5795 -326 1345 276 85 62 chr1 83154976 83155527 -199038137 - MLT2E LTR ERVL -46 582 19 245 341 71 98 chr1 83155602 83155857 -199037807 - L2 LINE L2 -5 3267 3020 232 264 69 42 chr1 83156896 83156968 -199036696 + L2 LINE L2 3195 3268 -4 192 329 98 37 chr1 83158357 83158521 -199035143 - L2 LINE L2 -1 3312 3139 317 304 172 34 chr1 83158567 83158771 -199034893 + MIR SINE MIR 31 262 0 240 313 48 48 chr1 83158993 83159064 -199034600 - L1ME LINE L1 -236 5885 5815 1947 156 105 10 chr1 83159064 83159455 -199034209 - MSTA LTR MaLR 0 428 1 8743 155 16 36 chr1 83159455 83161066 -199032598 - MSTA-int LTR MaLR 0 1580 3 1822 186 99 10 chr1 83161068 83161461 -199032203 - MSTA LTR MaLR 0 428 1 240 313 48 48 chr1 83161461 83161676 -199031988 - L1ME LINE L1 -305 5816 5595 7359 26 9 24 chr1 83161753 83162823 -199030841 + L1PA3 LINE L1 5097 6152 -3 37 52 0 0 chr1 83162823 83162881 -199030783 + AT_rich Low_complexity Low_complexity 1 58 0 329 295 54 23 chr1 83163649 83163778 -199029886 - MIR SINE MIR -18 244 112 1902 199 8 22 chr1 83165381 83165783 -199027881 + MSTD LTR MaLR 1 396 0 481 369 29 8 chr1 83166436 83166680 -199026984 - MIR SINE MIR -10 252 4 260 296 10 61 chr1 83166727 83166825 -199026839 + L2 LINE L2 2564 2656 -658 380 279 66 105 chr1 83166864 83167197 -199026467 + MLT1J LTR MaLR 128 447 -64 620 312 121 44 chr1 83167260 83167865 -199025799 + L2 LINE L2 2658 3305 -8 204 125 0 0 chr1 83168025 83168057 -199025607 + (CATA)n Simple_repeat Simple_repeat 2 33 0 232 264 69 42 chr1 83168906 83168978 -199024686 + L2 LINE L2 3195 3268 -4 1662 209 88 12 chr1 83170044 83170475 -199023189 + MLT1C LTR MaLR 1 464 -3 23 33 0 0 chr1 83170708 83170738 -199022926 + AT_rich Low_complexity Low_complexity 1 30 0 192 417 66 20 chr1 83171260 83171411 -199022253 - L2 LINE L2 -2 3270 3113 277 249 82 3 chr1 83171574 83171693 -199021971 + MLT1J2 LTR MaLR 72 198 -248 336 193 11 45 chr1 83171815 83171903 -199021761 + MLT1J2 LTR MaLR 366 450 0 528 294 32 50 chr1 83173023 83173203 -199020461 - MIR SINE MIR -3 259 82 1929 183 36 32 chr1 83173203 83173614 -199020050 - MLT2D LTR ERVL 0 414 2 528 294 32 50 chr1 83173614 83173654 -199020010 - MIR SINE MIR -180 82 43 253 234 62 0 chr1 83173854 83173918 -199019746 + L1MC1 LINE L1 6061 6128 -205 469 368 44 8 chr1 83174811 83175061 -199018603 - MIR SINE MIR -3 259 1 222 37 0 0 chr1 83175117 83175144 -199018520 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 391 232 0 0 chr1 83175166 83175235 -199018429 - AluJ/FRAM SINE Alu -16 286 218 337 341 52 23 chr1 83175269 83175442 -199018222 - MIR SINE MIR -36 226 49 248 412 6 0 chr1 83175506 83175671 -199017993 + L2 LINE L2 2446 2611 -703 820 314 101 38 chr1 83175820 83176468 -199017196 - L1M3de LINE L1 -5580 1073 564 21 71 0 0 chr1 83176537 83176579 -199017085 + AT_rich Low_complexity Low_complexity 1 42 0 4724 166 39 8 chr1 83176911 83177787 -199015877 - MER4D LTR ERV1 0 903 1 366 259 27 18 chr1 83179011 83179123 -199014541 - ORSL DNA AcHobo -161 114 2 245 341 71 98 chr1 83179362 83179617 -199014047 + L2 LINE L2 3020 3267 -5 1332 278 85 62 chr1 83179692 83180243 -199013421 + MLT2E LTR ERVL 19 582 -46 252 268 0 0 chr1 83180249 83180320 -199013344 - L1ME LINE L1 -326 5795 5725 998 239 121 62 chr1 83180519 83180582 -199013082 - MLT2B2 LTR ERVL 0 515 457 408 58 29 14 chr1 83180582 83180651 -199013013 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 998 239 121 62 chr1 83180651 83180977 -199012687 - MLT2B2 LTR ERVL -58 457 103 22 0 0 0 chr1 83181010 83181032 -199012632 + AT_rich Low_complexity Low_complexity 1 22 0 40 96 0 6 chr1 83182400 83182438 -199011226 + AT_rich Low_complexity Low_complexity 1 38 -117 7564 28 0 0 chr1 83182438 83183838 -199009826 + L1PA4 LINE L1 4753 6152 -3 40 96 0 6 chr1 83183838 83183955 -199009709 + AT_rich Low_complexity Low_complexity 38 155 0 247 322 122 22 chr1 83184393 83184483 -199009181 + MIR SINE MIR 16 114 -94 372 291 9 18 chr1 83184605 83184715 -199008949 - MIR SINE MIR -102 160 52 1707 129 65 28 chr1 83184754 83185079 -199008585 - THE1C LTR MaLR 0 375 39 516 277 75 83 chr1 83185175 83185526 -199008138 - MLT1G3 LTR MaLR -124 471 33 307 353 30 60 chr1 83185814 83186080 -199007584 + MIR SINE MIR 5 262 0 279 20 20 40 chr1 83186528 83186578 -199007086 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 225 287 124 39 chr1 83188613 83188742 -199004922 - MIR SINE MIR -18 244 105 344 310 81 62 chr1 83188909 83189315 -199004349 + L1M4 LINE L1 16 429 -6113 1094 272 99 5 chr1 83189320 83189735 -199003929 + L1M4 LINE L1 1638 2091 -4555 3291 201 42 24 chr1 83189912 83190721 -199002943 + L1MB7 LINE L1 5350 6173 -11 204 179 0 0 chr1 83191356 83191395 -199002269 + (TATG)n Simple_repeat Simple_repeat 2 40 0 237 348 59 0 chr1 83192378 83192496 -199001168 - L2 LINE L2 0 3313 3189 1830 138 10 3 chr1 83192730 83193021 -199000643 - AluSx SINE Alu -19 293 1 279 348 136 32 chr1 83193170 83193612 -199000052 - L2 LINE L2 -995 2319 1832 257 286 71 45 chr1 83193610 83193722 -198999942 + L2 LINE L2 2681 2795 -519 * 520 336 58 17 chr1 83194076 83194317 -198999347 + L2 LINE L2 2687 2937 -377 218 324 9 9 chr1 83194605 83194710 -198998954 - L2 LINE L2 -1607 1707 1603 189 310 0 56 chr1 83195167 83195238 -198998426 - L2 LINE L2 -4 3268 3202 231 405 8 16 chr1 83195888 83196014 -198997650 + MIR SINE MIR 29 153 -109 180 377 26 26 chr1 83196700 83196777 -198996887 + MIR SINE MIR 37 113 -95 929 200 72 15 chr1 83197133 83197245 -198996419 + AluJo SINE Alu 6 135 -177 216 0 0 0 chr1 83197245 83197269 -198996395 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 929 200 72 15 chr1 83197269 83197351 -198996313 + AluJo SINE Alu 135 211 -101 239 265 24 36 chr1 83197775 83197858 -198995806 - L1MD1 LINE L1 -18 6224 6143 1031 137 11 17 chr1 83198090 83198265 -198995399 - AluSg/x SINE Alu -14 298 125 19929 73 6 2 chr1 83198276 83201771 -198991893 - L1PA6 LINE L1 -9 6145 2647 15444 126 16 18 chr1 83201773 83204266 -198989398 - L1PA6 LINE L1 -3647 2499 11 329 311 84 18 chr1 83204460 83204627 -198989037 - L1MDa LINE L1 -842 1648 1389 262 237 21 0 chr1 83204718 83204815 -198988849 + CT-rich Low_complexity Low_complexity 2 100 0 358 261 67 123 chr1 83204838 83205259 -198988405 - L1MDa LINE L1 -4878 1241 845 845 202 118 81 chr1 83205261 83205667 -198987997 - L1ME2 LINE L1 -9 6155 5735 773 288 59 30 chr1 83205849 83206186 -198987478 + LTR40a LTR ERVL 123 469 -50 904 273 86 55 chr1 83206189 83206644 -198987020 - L1MC4 LINE L1 -1115 6927 6459 181 49 0 98 chr1 83206936 83206977 -198986687 + (TTTTTA)n Simple_repeat Simple_repeat 5 41 0 2495 56 0 0 chr1 83207352 83207654 -198986010 - AluY SINE Alu -9 302 1 258 260 110 20 chr1 83209042 83209188 -198984476 - MIR SINE MIR -13 249 91 459 303 58 8 chr1 83209323 83209584 -198984080 + L1ME4a LINE L1 5513 5786 -335 292 275 33 0 chr1 83210020 83210140 -198983524 + L1ME4a LINE L1 5997 6120 -1 1945 226 75 4 chr1 83212668 83213120 -198980544 - MLT1D LTR MaLR 0 505 22 183 327 56 51 chr1 83213682 83213896 -198979768 + L2 LINE L2 2848 3062 -210 411 294 33 39 chr1 83214147 83214327 -198979337 - MER5A DNA MER1_type 0 189 11 282 29 0 0 chr1 83214980 83215015 -198978649 + (CA)n Simple_repeat Simple_repeat 2 36 0 665 291 30 10 chr1 83216228 83216431 -198977233 + L1MD2 LINE L1 36 242 -6154 1783 281 70 28 chr1 83216434 83216805 -198976859 + L1MD2 LINE L1 286 640 -5756 1529 245 69 66 chr1 83216805 83217457 -198976207 + MLT1E1 LTR MaLR 1 654 0 1783 281 70 28 chr1 83217457 83217869 -198975795 + L1MD2 LINE L1 640 1102 -5294 1820 277 49 47 chr1 83217871 83219010 -198974654 + L1MD2 LINE L1 1205 2346 -4050 349 196 11 11 chr1 83219113 83219205 -198974459 + (TA)n Simple_repeat Simple_repeat 2 93 0 3029 248 38 42 chr1 83219314 83220532 -198973132 + L1MD2 LINE L1 2374 3586 -2629 2022 271 41 27 chr1 83220528 83220937 -198972727 + L1MD2 LINE L1 4534 4936 -1299 * 953 261 9 0 chr1 83220937 83221159 -198972505 - MER58A DNA MER1_type 0 224 1 2022 271 41 27 chr1 83221159 83221828 -198971836 + L1MD2 LINE L1 4936 5618 -617 1721 168 0 14 chr1 83221845 83222151 -198971513 + AluJb SINE Alu 3 304 0 272 294 38 78 chr1 83222185 83222416 -198971248 + L1MA10 LINE L1 5945 6326 -8 24 0 0 0 chr1 83222683 83222707 -198970957 + AT_rich Low_complexity Low_complexity 1 24 0 2505 245 50 35 chr1 83223001 83223763 -198969901 + L1MD2 LINE L1 5652 6424 -4 221 330 40 20 chr1 83224383 83224483 -198969181 + L2 LINE L2 2435 2536 -778 28 0 0 0 chr1 83225126 83225154 -198968510 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 83225801 83225826 -198967838 + AT_rich Low_complexity Low_complexity 1 25 0 30 59 0 0 chr1 83226832 83226883 -198966781 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr1 83227774 83227805 -198965859 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr1 83227824 83227853 -198965811 + AT_rich Low_complexity Low_complexity 1 29 0 410 290 53 8 chr1 83228311 83228442 -198965222 + MIR SINE MIR 22 158 -104 186 296 62 0 chr1 83228499 83228580 -198965084 + MIR SINE MIR 145 230 -32 22 0 0 0 chr1 83228778 83228800 -198964864 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1 83230331 83230364 -198963300 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr1 83230438 83230480 -198963184 + AT_rich Low_complexity Low_complexity 1 42 0 555 303 60 39 chr1 83230498 83230884 -198962780 + L1ME3A LINE L1 5471 5864 -306 24 0 0 0 chr1 83230891 83230915 -198962749 + AT_rich Low_complexity Low_complexity 1 24 0 283 337 60 32 chr1 83230997 83231279 -198962385 + L1MEc LINE L1 521 810 -6015 1311 239 60 56 chr1 83231304 83231768 -198961896 + MER31B LTR ERV1 1 466 0 533 269 63 71 chr1 83232226 83232896 -198960768 + L1MEc LINE L1 1061 1659 -4883 448 182 148 0 chr1 83233484 83233572 -198960092 + MER58A DNA MER1_type 12 112 0 450 209 33 0 chr1 83234039 83234130 -198959534 + MER58A DNA MER1_type 131 224 0 283 234 16 0 chr1 83236183 83236307 -198957357 + (CCA)n Simple_repeat Simple_repeat 3 128 0 29 60 0 0 chr1 83236621 83236671 -198956993 + AT_rich Low_complexity Low_complexity 1 50 0 261 0 0 0 chr1 83237263 83237292 -198956372 + (TG)n Simple_repeat Simple_repeat 2 30 0 1295 244 24 6 chr1 83237292 83237632 -198956032 + L1ME1 LINE L1 5607 5952 -214 21 0 0 0 chr1 83237645 83237666 -198955998 + AT_rich Low_complexity Low_complexity 1 21 0 3021 205 39 38 chr1 83237666 83238481 -198955183 - L1MA9 LINE L1 -38 6274 5459 3235 149 106 29 chr1 83238644 83239373 -198954291 + LTR1 LTR ERV1 1 785 0 1069 199 43 121 chr1 83239515 83239938 -198953726 + MLT1B LTR MaLR 1 390 0 472 231 42 157 chr1 83240730 83240946 -198952718 - MIR SINE MIR -2 260 70 286 394 61 0 chr1 83241879 83242059 -198951605 - L3 LINE CR1 -26 1551 1361 408 253 64 38 chr1 83243058 83243505 -198950159 - L1MCc LINE L1 -4973 1450 1272 22 0 0 0 chr1 83243736 83243758 -198949906 + AT_rich Low_complexity Low_complexity 1 22 0 15830 220 24 12 chr1 83243811 83248101 -198945563 - L1PA15 LINE L1 -13 6803 2413 2199 125 0 3 chr1 83248101 83248406 -198945258 + AluSq SINE Alu 3 306 -7 15830 220 24 12 chr1 83248406 83249823 -198943841 - L1PA15 LINE L1 -4403 2413 1014 2363 81 0 0 chr1 83249823 83250120 -198943544 - AluY SINE Alu -12 299 3 534 277 106 28 chr1 83250244 83250601 -198943063 - L1M4 LINE L1 -2185 3961 3577 22 35 0 0 chr1 83250796 83250825 -198942839 + AT_rich Low_complexity Low_complexity 1 29 0 411 172 20 91 chr1 83251206 83251305 -198942359 + MER21B LTR ERV1 13 104 -759 2436 248 96 15 chr1 83251305 83252031 -198941633 + MER21B LTR ERV1 19 803 -60 1705 166 3 10 chr1 83252164 83252453 -198941211 + AluSx SINE Alu 1 287 -25 351 351 50 37 chr1 83252924 83253166 -198940498 - L1MEc LINE L1 -4761 1635 1391 2302 77 7 7 chr1 83253884 83254194 -198939470 - AluY SINE Alu -1 310 1 269 304 23 53 chr1 83257871 83258137 -198935527 + HAL1b LINE L1 64 321 -1027 35 54 0 0 chr1 83258472 83258528 -198935136 + AT_rich Low_complexity Low_complexity 1 56 0 204 196 36 0 chr1 83258874 83258930 -198934734 + (TA)n Simple_repeat Simple_repeat 1 58 0 1001 264 97 35 chr1 83259061 83259568 -198934096 + L1MC4a LINE L1 6052 6589 -1219 852 248 23 4 chr1 83259625 83259891 -198933773 + L1MC4 LINE L1 7092 7362 -680 206 360 65 7 chr1 83260022 83260161 -198933503 - L2 LINE L2 -1475 1839 1693 258 32 0 0 chr1 83260175 83260206 -198933458 + (TA)n Simple_repeat Simple_repeat 2 32 0 314 222 56 0 chr1 83260225 83260297 -198933367 + MER63 DNA MER1_type 676 751 -85 1812 154 50 39 chr1 83261025 83261383 -198932281 - THE1B LTR MaLR -2 362 1 10452 117 30 5 chr1 83261388 83262921 -198930743 - THE1B-int LTR MaLR -6 1574 3 1624 167 44 44 chr1 83262926 83263286 -198930378 - THE1B LTR MaLR -4 360 1 246 172 54 21 chr1 83263765 83263858 -198929806 + (TA)n Simple_repeat Simple_repeat 1 96 0 814 297 86 43 chr1 83263863 83264418 -198929246 + L2 LINE L2 2692 3313 0 297 329 206 0 chr1 83264730 83264900 -198928764 - MIR SINE MIR -38 224 20 26 0 0 0 chr1 83264900 83264926 -198928738 + AT_rich Low_complexity Low_complexity 1 26 0 367 179 26 0 chr1 83264983 83265061 -198928603 - L1MD2 LINE L1 -86 6273 6194 1862 193 43 28 chr1 83265070 83265610 -198928054 + MLT2A2 LTR ERVL 1 554 0 533 256 160 4 chr1 83265652 83265890 -198927774 - L1MD2 LINE L1 -231 6128 5854 2516 201 163 53 chr1 83265892 83266141 -198927523 - L1MDa LINE L1 -3890 2650 2430 1824 196 2 42 chr1 83266141 83266594 -198927070 - L1MA10 LINE L1 0 6334 5900 2516 201 163 53 chr1 83266594 83267443 -198926221 - L1MDa LINE L1 -4110 2430 1431 1778 287 67 23 chr1 83267445 83268231 -198925433 - L1MDa LINE L1 -5395 1145 171 285 349 24 0 chr1 83268353 83268479 -198925185 + MIR SINE MIR 130 258 -4 242 293 93 20 chr1 83268588 83268738 -198924926 - MIR SINE MIR 0 262 102 25 0 0 0 chr1 83269079 83269104 -198924560 + AT_rich Low_complexity Low_complexity 1 25 0 2520 98 8 39 chr1 83269380 83269767 -198923897 + THE1C LTR MaLR 1 375 0 10122 125 31 8 chr1 83269767 83271298 -198922366 + THE1C-int LTR MaLR 1 1567 -13 2469 117 8 11 chr1 83271300 83271676 -198921988 + THE1C LTR MaLR 1 375 0 667 265 44 0 chr1 83271799 83271980 -198921684 + MER5A DNA MER1_type 1 189 0 216 298 8 99 chr1 83272602 83272723 -198920941 - L2 LINE L2 -212 3060 2951 2966 145 22 0 chr1 83273214 83273719 -198919945 - L1MA4 LINE L1 -348 5952 5437 2826 183 10 20 chr1 83273721 83274424 -198919240 + L1MA4 LINE L1 4733 5430 -743 6954 69 0 1 chr1 83274521 83275550 -198918114 + L1PA7 LINE L1 5121 6148 -6 397 308 71 66 chr1 83276168 83276606 -198917058 + L1MC3 LINE L1 16 455 -5968 1044 266 65 40 chr1 83276895 83277708 -198915956 + L1MC3 LINE L1 947 1744 -4849 712 254 20 134 chr1 83277717 83278477 -198915187 + L1MC3 LINE L1 3956 4628 -2313 1325 228 81 9 chr1 83278477 83278649 -198915015 + MLT1B LTR MaLR 10 168 -222 180 0 0 0 chr1 83278649 83278669 -198914995 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 237 33 0 0 chr1 83278668 83278698 -198914966 + (GA)n Simple_repeat Simple_repeat 2 31 0 1325 228 81 9 chr1 83278669 83278872 -198914792 + MLT1B LTR MaLR 168 381 -9 3053 249 70 69 chr1 83278921 83279650 -198914014 + L1MC3 LINE L1 4687 5414 -1527 571 152 0 0 chr1 83279650 83279742 -198913922 + AluSp/q SINE Alu 156 247 -66 3053 249 70 69 chr1 83279742 83281299 -198912365 + L1MC3 LINE L1 5414 6198 -743 413 241 0 24 chr1 83281313 83281396 -198912268 + MER7A DNA MER2_type 1 79 -267 792 182 12 42 chr1 83281396 83281561 -198912103 - FAM SINE Alu 0 49 1 1619 146 19 0 chr1 83281561 83281821 -198911843 + MER7A DNA MER2_type 73 337 0 2247 234 43 74 chr1 83281949 83282009 -198911655 + L1MD3 LINE L1 6365 6425 -1570 2062 117 31 0 chr1 83282009 83282299 -198911365 + AluSx SINE Alu 3 301 -11 2247 234 43 74 chr1 83282299 83282420 -198911244 + L1MD3 LINE L1 6425 6548 -1447 2768 183 25 73 chr1 83282420 83283054 -198910610 - MER6A DNA MER2_type -1 604 1 2247 234 43 74 chr1 83283054 83283814 -198909850 + L1MD3 LINE L1 6548 7278 -717 465 242 8 31 chr1 83283814 83283942 -198909722 + MLT1F1 LTR MaLR 1 125 -442 2462 185 81 20 chr1 83283942 83284499 -198909165 + L1MD3 LINE L1 7404 7994 -1 297 0 0 0 chr1 83285061 83285094 -198908570 + (TA)n Simple_repeat Simple_repeat 1 33 0 1861 277 54 26 chr1 83285292 83285869 -198907795 - MLT1E LTR MaLR 0 593 1 26 74 0 0 chr1 83286031 83286085 -198907579 + AT_rich Low_complexity Low_complexity 1 54 0 5873 200 58 24 chr1 83287984 83288410 -198905254 + L1PA12 LINE L1 18 428 -6434 1915 93 118 14 chr1 83288410 83288690 -198904974 - AluY SINE Alu -2 309 1 5873 200 58 24 chr1 83288690 83289516 -198904148 + L1PA12 LINE L1 428 1252 -5610 * 12808 245 37 28 chr1 83289509 83294299 -198899365 + L1PA12 LINE L1 1982 6881 -3 347 231 39 8 chr1 83294308 83294438 -198899226 + L1MA7 LINE L1 6158 6291 0 197 225 0 0 chr1 83294514 83294554 -198899110 + L2 LINE L2 3274 3313 0 24 0 0 0 chr1 83294559 83294583 -198899081 + AT_rich Low_complexity Low_complexity 1 24 0 207 216 20 0 chr1 83296582 83296633 -198897031 + A-rich Low_complexity Low_complexity 2 53 0 549 117 18 9 chr1 83297573 83297684 -198895980 + (TAGA)n Simple_repeat Simple_repeat 4 115 0 393 319 81 23 chr1 83297795 83298105 -198895559 + L1ME4a LINE L1 5632 5962 -159 581 244 78 22 chr1 83298728 83298908 -198894756 + MLT1J LTR MaLR 1 190 -321 6089 103 24 0 chr1 83300191 83301112 -198892552 - L1PA10 LINE L1 -5 6163 5232 188 294 24 47 chr1 83301454 83301539 -198892125 - L3 LINE CR1 -884 693 611 4112 109 36 3 chr1 83301907 83302521 -198891143 - MER41B LTR ERV1 -1 634 1 347 366 12 6 chr1 83302559 83302723 -198890941 - L2 LINE L2 -296 3017 2853 359 147 15 15 chr1 83302771 83302839 -198890825 - MER101B LTR ERV1 -29 541 474 468 223 18 9 chr1 83302951 83303063 -198890601 - MER101 LTR ERV1 -302 172 60 404 331 85 44 chr1 83303088 83303449 -198890215 - L2 LINE L2 -466 2848 2468 1031 217 28 108 chr1 83303449 83303846 -198889818 + MLT1A1 LTR MaLR 1 365 0 404 331 85 44 chr1 83303846 83303874 -198889790 - L2 LINE L2 -846 2468 2443 342 326 38 59 chr1 83303880 83304050 -198889614 + MIR SINE MIR 30 195 -67 2226 106 3 0 chr1 83304050 83304352 -198889312 + AluSq SINE Alu 1 303 -10 342 326 38 59 chr1 83304352 83304417 -198889247 + MIR SINE MIR 195 260 -2 226 371 38 15 chr1 83305819 83305951 -198887713 - MIR3 SINE MIR -66 142 8 462 281 122 6 chr1 83307713 83307877 -198885787 + MER5A DNA MER1_type 7 189 0 277 315 55 31 chr1 83308113 83308240 -198885424 + L2 LINE L2 3171 3300 -13 183 156 0 0 chr1 83308313 83308345 -198885319 + (TTA)n Simple_repeat Simple_repeat 1 32 0 749 204 0 0 chr1 83308690 83308827 -198884837 - FRAM SINE Alu -30 146 10 281 271 56 126 chr1 83309026 83309104 -198884560 + L2 LINE L2 2991 3073 -240 7550 125 43 19 chr1 83309104 83310356 -198883308 + HSMAR1 DNA Mariner 4 1285 -2 281 271 56 126 chr1 83310356 83310491 -198883173 + L2 LINE L2 3073 3189 -124 2445 212 7 50 chr1 83311404 83311847 -198881817 - MLT2B2 LTR ERVL 0 515 55 2302 144 17 6 chr1 83311847 83312207 -198881457 - THE1B LTR MaLR 0 364 1 9502 123 14 62 chr1 83312207 83313866 -198879798 - THE1B-int LTR MaLR 0 1580 1 2366 137 20 6 chr1 83313866 83314224 -198879440 - THE1B LTR MaLR 0 364 2 2445 212 7 50 chr1 83314224 83314316 -198879348 - MLT2B2 LTR ERVL -457 58 1 2195 100 3 0 chr1 83315465 83315756 -198877908 + AluSx SINE Alu 1 292 -20 292 340 49 59 chr1 83317390 83317593 -198876071 + MIR SINE MIR 7 207 -55 1306 126 18 27 chr1 83318968 83319191 -198874473 - THE1C LTR MaLR 0 375 155 1011 78 7 0 chr1 83319195 83319336 -198874328 + AluY SINE Alu 154 295 -16 982 159 6 0 chr1 83319336 83319499 -198874165 - THE1C LTR MaLR -211 164 1 207 0 0 0 chr1 83319794 83319817 -198873847 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 200 342 25 13 chr1 83320234 83320313 -198873351 - MIR SINE MIR -136 126 47 666 162 142 10 chr1 83320460 83320640 -198873024 - MER6 DNA MER2_type 0 865 -65 298 358 73 22 chr1 83320640 83320777 -198872887 - MIR SINE MIR -111 151 8 282 56 0 0 chr1 83322740 83322776 -198870888 + (TG)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr1 83323080 83323104 -198870560 + AT_rich Low_complexity Low_complexity 1 24 0 234 105 0 0 chr1 83323367 83323405 -198870259 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1066 213 8 29 chr1 83324432 83324676 -198868988 - L1PA13 LINE L1 -4889 1898 1660 361 195 26 26 chr1 83324673 83324750 -198868914 + L1M1 LINE L1 327 403 -7162 * 2023 142 17 0 chr1 83325406 83325751 -198867913 - L1MA1 LINE L1 -131 7590 7240 * 10751 187 28 21 chr1 83325749 83328406 -198865258 - L1MA1 LINE L1 -743 6822 4207 6713 184 51 116 chr1 83328404 83330182 -198863482 - L1MA1 LINE L1 -5576 1989 327 * 11570 214 24 24 chr1 83330179 83331143 -198862521 + L1P LINE L1 1023 1986 -4160 817 80 0 0 chr1 83331143 83331256 -198862408 + L1PA4 LINE L1 6043 6155 0 11570 214 24 24 chr1 83331256 83333126 -198860538 + L1P LINE L1 1986 3860 -2286 2294 118 15 0 chr1 83333126 83333461 -198860203 + L1PA11 LINE L1 5826 6169 -5 11570 214 24 24 chr1 83333461 83333473 -198860191 + L1P LINE L1 3859 3870 -2276 22 70 0 0 chr1 83333474 83333517 -198860147 + AT_rich Low_complexity Low_complexity 1 43 0 911 259 63 12 chr1 83333616 83333871 -198859793 - L1MA1 LINE L1 -7234 331 64 23 33 0 0 chr1 83334288 83334318 -198859346 + AT_rich Low_complexity Low_complexity 1 30 0 447 265 65 41 chr1 83334524 83334694 -198858970 + MIR SINE MIR 74 247 -15 1894 266 57 25 chr1 83335444 83336041 -198857623 - MLT1E3 LTR MaLR -6 618 3 18553 172 22 70 chr1 83338046 83339970 -198853694 + L1M1 LINE L1 19 2034 -5531 2109 141 48 22 chr1 83339970 83340325 -198853339 - THE1B LTR MaLR 0 364 1 10856 115 19 5 chr1 83340325 83341883 -198851781 - THE1B-int LTR MaLR 0 1580 1 413 164 0 0 chr1 83341883 83341950 -198851714 - THE1B LTR MaLR 0 375 309 1045 118 146 17 chr1 83341939 83342117 -198851547 - THE1B LTR MaLR -163 201 1 * 18553 172 22 70 chr1 83342117 83346961 -198846703 + L1M1 LINE L1 2198 6687 -878 571 332 143 35 chr1 83347741 83348552 -198845112 + L1MC4a LINE L1 2973 3871 -2275 2078 328 110 23 chr1 83348553 83349918 -198843746 + L2 LINE L2 1822 3309 -4 300 273 84 39 chr1 83350100 83350411 -198843253 + L1MC4a LINE L1 5043 5367 -779 206 0 69 0 chr1 83350421 83350450 -198843214 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 523 308 98 34 chr1 83350656 83351043 -198842621 + L1MC4a LINE L1 5464 5875 -1933 308 268 36 72 chr1 83354192 83354330 -198839334 + MIR3 SINE MIR 46 178 -30 235 346 29 19 chr1 83354513 83354617 -198839047 - MIR3 SINE MIR -54 154 50 200 245 41 0 chr1 83354790 83354839 -198838825 - MIR3 SINE MIR -8 200 150 768 247 16 5 chr1 83355784 83355974 -198837690 + MIR SINE MIR 59 250 -12 333 216 144 50 chr1 83356308 83356447 -198837217 - MIR SINE MIR -43 219 68 24 0 0 0 chr1 83356471 83356495 -198837169 + AT_rich Low_complexity Low_complexity 1 24 0 1882 149 72 9 chr1 83356644 83356979 -198836685 + LTR42 LTR ERVL 1 356 -139 719 235 22 87 chr1 83407899 83408090 -198785574 - MER20 DNA MER1_type -4 215 40 1991 171 3 9 chr1 83408090 83408429 -198785235 + MER1B DNA MER1_type 1 337 0 719 235 22 87 chr1 83408429 83408467 -198785197 - MER20 DNA MER1_type -179 40 1 255 61 0 0 chr1 83408530 83408563 -198785101 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 420 68 41 0 chr1 83408741 83408814 -198784850 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 277 244 122 49 chr1 83408928 83409133 -198784531 - L1MC5 LINE L1 -389 7572 7353 7712 192 21 23 chr1 83409153 83409635 -198784029 + ERVL LTR ERVL 763 1245 -4519 2014 104 46 0 chr1 83409635 83409915 -198783749 + AluSc SINE Alu 1 293 -16 1140 80 11 6 chr1 83409923 83410098 -198783566 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 7712 192 21 23 chr1 83410098 83411918 -198781746 + ERVL LTR ERVL 1252 3143 -2621 1631 213 3 3 chr1 83412466 83412771 -198780893 - AluSx SINE Alu -7 305 1 237 154 31 46 chr1 83413443 83413508 -198780156 - LTR67 LTR ERVL -489 68 5 1977 141 7 0 chr1 83414561 83414845 -198778819 - AluSg SINE Alu -23 287 2 447 327 75 0 chr1 83414862 83415021 -198778643 - MIR SINE MIR -67 195 25 685 236 30 52 chr1 83415580 83415813 -198777851 + L2 LINE L2 2310 2537 -777 289 189 54 99 chr1 83415818 83415929 -198777735 + L1MC5 LINE L1 7765 7870 -91 211 184 0 0 chr1 83416007 83416045 -198777619 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 628 293 179 43 chr1 83416074 83416618 -198777046 + L2 LINE L2 2609 3223 -90 320 266 151 77 chr1 83417734 83418095 -198775569 - MLT1H LTR MaLR -5 544 142 1788 132 57 46 chr1 83418095 83418466 -198775198 + THE1C LTR MaLR 1 375 0 320 266 151 77 chr1 83418466 83418548 -198775116 - MLT1H LTR MaLR -407 142 68 433 287 42 21 chr1 83418622 83418765 -198774899 + MIR SINE MIR 104 249 -13 24 0 0 0 chr1 83418891 83418915 -198774749 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr1 83419803 83419825 -198773839 + (TA)n Simple_repeat Simple_repeat 2 23 0 267 313 35 80 chr1 83421363 83421564 -198772100 - MLT1J LTR MaLR -299 212 21 557 340 108 32 chr1 83421598 83422060 -198771604 + MLT1K LTR MaLR 16 512 -76 1145 208 32 0 chr1 83422240 83422456 -198771208 - MLT1A1 LTR MaLR -3 362 140 3869 129 35 2 chr1 83422477 83423098 -198770566 - L1PA15 LINE L1 0 6165 5524 5337 190 43 56 chr1 83423172 83424465 -198769199 + L1P4 LINE L1 3895 5153 -1012 209 81 0 27 chr1 83424465 83424502 -198769162 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 5337 190 43 56 chr1 83424502 83424867 -198768797 + L1P4 LINE L1 5153 5521 -644 704 189 0 49 chr1 83424867 83425031 -198768633 - MLT1A1 LTR MaLR -209 156 1 209 298 0 0 chr1 83425376 83425423 -198768241 + L2 LINE L2 3244 3290 -23 4847 187 62 31 chr1 83425424 83426812 -198766852 - L1MC1 LINE L1 0 6333 4889 1527 143 20 0 chr1 83426846 83427091 -198766573 - L1PA13 LINE L1 -5 6158 5909 2356 186 0 0 chr1 83427091 83427520 -198766144 + L1P LINE L1 4835 5263 -883 776 196 79 29 chr1 83427523 83427763 -198765901 - L1MC1 LINE L1 -1247 4899 4648 2436 105 14 3 chr1 83428622 83428973 -198764691 + THE1A LTR MaLR 1 355 0 7174 141 65 2 chr1 83428975 83430375 -198763289 + THE1A-int LTR MaLR 3 1580 0 2024 97 7 4 chr1 83430376 83430655 -198763009 + THE1A LTR MaLR 2 281 -74 9816 106 16 1 chr1 83430659 83432058 -198761606 - L1P LINE L1 -4725 1421 3 182 237 34 34 chr1 83432610 83432669 -198760995 - MIR SINE MIR 0 262 204 417 269 72 52 chr1 83433867 83434060 -198759604 + MIR SINE MIR 20 216 -46 1271 99 0 0 chr1 83434069 83434231 -198759433 + AluSp SINE Alu 137 298 -15 1994 156 36 25 chr1 83434350 83434710 -198758954 + THE1B LTR MaLR 1 364 0 2000 150 3 3 chr1 83434732 83435039 -198758625 - AluSx SINE Alu -5 307 1 232 215 0 31 chr1 83435057 83435122 -198758542 + A-rich Low_complexity Low_complexity 3 65 0 397 257 22 15 chr1 83435260 83435396 -198758268 - L1MC4 LINE L1 -2 8040 7904 271 295 121 12 chr1 83435467 83435640 -198758024 - L1MC4 LINE L1 -138 7904 7713 297 189 27 0 chr1 83435740 83435814 -198757850 + L1MC4 LINE L1 7136 7211 -831 357 292 88 15 chr1 83435857 83435994 -198757670 + L1MC4 LINE L1 7364 7510 -532 379 310 56 14 chr1 83438059 83438201 -198755463 + L2 LINE L2 3161 3308 -5 425 159 0 11 chr1 83438353 83438441 -198755223 + (TGGA)n Simple_repeat Simple_repeat 4 90 0 201 178 22 0 chr1 83438445 83438490 -198755174 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 348 264 195 44 chr1 83440231 83440390 -198753274 + MIR SINE MIR 10 192 -70 338 294 22 0 chr1 83441192 83441284 -198752380 + MLT1J2 LTR MaLR 69 162 -288 290 311 26 63 chr1 83441347 83441537 -198752127 + MLT1J2 LTR MaLR 266 448 -2 190 338 67 31 chr1 83441857 83442082 -198751582 - L2 LINE L2 -219 3053 2821 24 32 0 0 chr1 83444274 83444305 -198749359 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 83444518 83444539 -198749125 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 83444703 83444733 -198748931 + AT_rich Low_complexity Low_complexity 1 30 0 1075 291 21 28 chr1 83444767 83445197 -198748467 - L1ME3 LINE L1 -66 6096 5670 663 261 0 13 chr1 83445243 83445400 -198748264 - AluJb SINE Alu -157 155 1 587 310 18 34 chr1 83445400 83445631 -198748033 - L1ME3 LINE L1 -476 5694 5461 5218 141 2 0 chr1 83445631 83446853 -198746811 - L1PA13 LINE L1 -7 6156 4950 587 310 18 34 chr1 83446853 83446880 -198746784 - L1ME3 LINE L1 -709 5461 5435 6343 61 1 0 chr1 83447064 83447854 -198745810 - L1PA7 LINE L1 -4 6150 5360 487 361 71 0 chr1 83448503 83448755 -198744909 + HAL1 LINE L1 431 700 -1807 304 283 78 34 chr1 83448893 83449339 -198744325 - L1MEc LINE L1 -4038 2502 2044 201 39 0 0 chr1 83449528 83449554 -198744110 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 9776 109 1 25 chr1 83449554 83451017 -198742647 - L1PA8 LINE L1 -11 7599 6178 213 39 0 0 chr1 83451017 83451043 -198742621 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9776 109 1 25 chr1 83451043 83451878 -198741786 - L1PA8 LINE L1 -1432 6178 5324 10115 160 68 16 chr1 83451878 83453863 -198739801 - L1PA8 LINE L1 -3278 4306 1155 1421 201 10 33 chr1 83453864 83454029 -198739635 - AluJb SINE Alu -16 296 140 2359 71 7 3 chr1 83454029 83454325 -198739339 - AluY SINE Alu -14 297 1 1421 201 10 33 chr1 83454325 83454462 -198739202 - AluJb SINE Alu -172 140 1 956 281 108 46 chr1 83454468 83454682 -198738982 - L1MEc LINE L1 -4550 1990 1791 2339 89 60 3 chr1 83454682 83455031 -198738633 - L1PA13 LINE L1 0 6163 5795 956 281 108 46 chr1 83455031 83455642 -198738022 - L1MEc LINE L1 -4749 1791 1114 3690 311 68 48 chr1 83455659 83456620 -198737044 - L2 LINE L2 -70 3243 2302 230 0 33 0 chr1 83456620 83456650 -198737014 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3690 311 68 48 chr1 83456650 83457635 -198736029 - L2 LINE L2 -1011 2302 1244 302 230 47 14 chr1 83457657 83457805 -198735859 + HAL1 LINE L1 1033 1185 -1322 25 0 0 0 chr1 83457844 83457869 -198735795 + AT_rich Low_complexity Low_complexity 1 25 0 591 328 81 7 chr1 83458039 83458106 -198735558 + HAL1 LINE L1 1516 1577 -930 342 0 0 0 chr1 83458106 83458144 -198735520 + (TA)n Simple_repeat Simple_repeat 2 39 0 2141 115 0 7 chr1 83458144 83458448 -198735216 - AluSq SINE Alu -7 306 5 591 328 81 7 chr1 83458448 83458675 -198734989 + HAL1 LINE L1 1576 1833 -674 627 282 125 84 chr1 83458796 83459466 -198734198 + L2 LINE L2 2598 3298 -15 359 288 49 6 chr1 83459488 83459651 -198734013 + HAL1 LINE L1 1980 2149 -358 30 0 0 0 chr1 83459656 83459686 -198733978 + AT_rich Low_complexity Low_complexity 1 30 0 2121 129 0 0 chr1 83459884 83460179 -198733485 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr1 83460252 83460273 -198733391 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 83460301 83460331 -198733333 + AT_rich Low_complexity Low_complexity 1 30 0 2311 57 0 17 chr1 83460493 83460791 -198732873 + AluY SINE Alu 1 293 -18 23 0 0 0 chr1 83461945 83461968 -198731696 + AT_rich Low_complexity Low_complexity 1 23 0 490 236 86 21 chr1 83462151 83462291 -198731373 + MER77 LTR ERV1 67 215 -390 723 293 4 35 chr1 83462291 83462523 -198731141 - HERVL40 LTR ERVL -28 5502 5278 762 240 62 105 chr1 83463550 83463875 -198729789 - HERVL40 LTR ERVL -691 4660 2036 652 198 32 37 chr1 83463875 83464043 -198729621 - HERVL40 LTR ERVL -1025 2012 1940 243 309 74 0 chr1 83464252 83464333 -198729331 + L2 LINE L2 3227 3313 0 309 324 37 15 chr1 83464432 83464568 -198729096 + L1P1 LINE L1 5686 5824 -331 208 317 87 48 chr1 83466365 83466469 -198727195 - L2 LINE L2 -8 3305 3198 231 197 76 0 chr1 83466667 83466733 -198726931 - MIR SINE MIR -61 201 131 22 0 0 0 chr1 83467049 83467071 -198726593 + AT_rich Low_complexity Low_complexity 1 22 0 200 290 32 32 chr1 83467600 83467662 -198726002 - L2 LINE L2 -498 2816 2755 749 313 135 0 chr1 83467750 83468054 -198725610 - L2 LINE L2 -785 2529 2185 786 261 124 48 chr1 83468483 83468797 -198724867 + LTR16A1 LTR ERVL 107 444 -13 2855 137 5 2 chr1 83469125 83469571 -198724093 - Tigger3b DNA MER2_type -35 1197 751 5691 203 23 10 chr1 83469582 83470884 -198722780 - L1 LINE L1 -2296 3850 2532 4058 156 25 19 chr1 83470888 83471643 -198722021 - Tigger3b DNA MER2_type -471 760 1 4124 142 51 6 chr1 83471722 83472411 -198721253 + MER72 LTR ERV1 3 722 0 286 300 43 14 chr1 83472801 83472941 -198720723 + MER41B LTR ERV1 259 402 -233 235 237 21 43 chr1 83473306 83473399 -198720265 + GA-rich Low_complexity Low_complexity 1 91 0 724 303 66 0 chr1 83474812 83475040 -198718624 - MIR SINE MIR -7 255 13 318 265 53 68 chr1 83475814 83475946 -198717718 + L2 LINE L2 3180 3309 -4 4349 64 4 0 chr1 83478753 83479315 -198714349 - L1PA7 LINE L1 -7 6147 5584 1191 331 89 31 chr1 83479755 83480594 -198713070 + L2 LINE L2 1798 2685 -629 13443 192 26 4 chr1 83481592 83484118 -198709546 + ERVL-B2 LTR ERVL 3176 5757 -7 1736 219 119 23 chr1 83484118 83484534 -198709130 + MLT2B2 LTR ERVL 1 468 -47 189 0 0 0 chr1 83484534 83484555 -198709109 + (CA)n Simple_repeat Simple_repeat 2 22 0 1736 219 119 23 chr1 83484555 83484608 -198709056 + MLT2B2 LTR ERVL 468 515 0 1078 259 27 84 chr1 83484669 83485195 -198708469 - L1MC5 LINE L1 -722 7239 6744 383 151 3 3 chr1 83485306 83485373 -198708291 + Alu SINE Alu 1 53 -249 1790 107 0 50 chr1 83485373 83485654 -198708010 + AluSg SINE Alu 14 280 -30 363 322 77 1 chr1 83485746 83485894 -198707770 + MIR SINE MIR 1 163 -65 978 326 36 8 chr1 83487875 83488231 -198705433 - LTR16A LTR ERVL -20 430 65 26 30 0 0 chr1 83488403 83488436 -198705228 + AT_rich Low_complexity Low_complexity 1 33 0 230 318 31 31 chr1 83488486 83488615 -198705049 - MIR SINE MIR -50 212 84 195 342 29 62 chr1 83489013 83489253 -198704411 - L2 LINE L2 -527 2787 2556 26 30 0 0 chr1 83489404 83489437 -198704227 + AT_rich Low_complexity Low_complexity 1 33 0 316 309 73 37 chr1 83489613 83489804 -198703860 - MLT1J2 LTR MaLR -8 442 245 1110 158 11 5 chr1 83489897 83490087 -198703577 + MER2 DNA MER2_type 152 342 -3 702 269 28 58 chr1 83490090 83490285 -198703379 + L1MC2 LINE L1 1001 1200 -5184 2196 101 0 26 chr1 83490285 83490593 -198703071 + AluSq SINE Alu 1 300 -13 702 269 28 58 chr1 83490593 83490875 -198702789 + L1MC2 LINE L1 1200 1415 -4969 324 295 143 48 chr1 83490887 83491097 -198702567 - L1MC4a LINE L1 -1455 6353 6124 183 42 0 0 chr1 83491237 83491261 -198702403 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1882 130 4 7 chr1 83491263 83491540 -198702124 - AluSx SINE Alu -32 280 5 3381 244 28 2 chr1 83491594 83492458 -198701206 + L1MC2 LINE L1 3564 4449 -1933 25 65 0 0 chr1 83492458 83492504 -198701160 + AT_rich Low_complexity Low_complexity 1 46 0 5039 214 19 19 chr1 83492504 83493068 -198700596 + L1MC2 LINE L1 5286 5849 -731 1766 137 81 34 chr1 83493068 83493426 -198700238 + THE1C LTR MaLR 1 375 0 5039 214 19 19 chr1 83493426 83494155 -198699509 + L1MC2 LINE L1 5849 6580 0 286 290 39 29 chr1 83495135 83495241 -198698423 - MIR SINE MIR -61 147 42 229 45 23 45 chr1 83496472 83496516 -198697148 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 731 341 54 49 chr1 83496766 83497302 -198696362 - L2 LINE L2 -5 3308 2772 1729 240 129 26 chr1 83497302 83498153 -198695511 - L1ME2 LINE L1 -21 6143 5176 365 272 99 15 chr1 83498264 83498466 -198695198 - L1ME2 LINE L1 -3324 2822 2604 * 2586 270 80 23 chr1 83498464 83499658 -198694006 + L1ME2 LINE L1 4065 5327 -819 1226 244 0 7 chr1 83499670 83499953 -198693711 + AluJb SINE Alu 11 291 -21 1566 266 66 8 chr1 83499983 83500486 -198693178 + L1ME2 LINE L1 5336 5867 -297 733 281 67 67 chr1 83500738 83501097 -198692567 - L2 LINE L2 -1 3312 2954 1083 184 32 14 chr1 83501202 83501480 -198692184 + L1MA7 LINE L1 5999 6281 -10 1911 173 125 5 chr1 83501739 83502115 -198691549 + MSTA LTR MaLR 8 428 0 576 167 28 28 chr1 83502374 83502482 -198691182 + FLAM_C SINE Alu 2 109 -34 23 54 0 0 chr1 83502485 83502522 -198691142 + AT_rich Low_complexity Low_complexity 1 37 0 2145 166 8 0 chr1 83503245 83503606 -198690058 - THE1B LTR MaLR 0 364 1 198 281 232 0 chr1 83503645 83503727 -198689937 - MER5A DNA MER1_type -1 188 88 300 27 0 0 chr1 83504487 83504524 -198689140 + (CAA)n Simple_repeat Simple_repeat 2 38 0 487 282 110 52 chr1 83504714 83505232 -198688432 + HAL1b LINE L1 61 608 -740 641 293 4 44 chr1 83505240 83505469 -198688195 - MER58A DNA MER1_type 0 224 5 2174 193 9 32 chr1 83506174 83506610 -198687054 - MSTB LTR MaLR 0 426 1 236 305 146 31 chr1 83506623 83507335 -198686329 + L1M4 LINE L1 2442 3235 -2911 23 54 0 0 chr1 83507391 83507428 -198686236 + AT_rich Low_complexity Low_complexity 1 37 0 1860 138 22 0 chr1 83507553 83507893 -198685771 - AluSx SINE Alu 0 346 1 26 0 0 0 chr1 83509081 83509107 -198684557 + AT_rich Low_complexity Low_complexity 1 26 0 659 99 0 11 chr1 83509127 83509218 -198684446 - 5S rRNA rRNA -31 90 1 885 254 66 63 chr1 83509441 83509760 -198683904 + L2 LINE L2 1037 1356 -1958 608 315 11 11 chr1 83509840 83510024 -198683640 - MER91B DNA MER1_type 0 190 7 926 253 112 86 chr1 83510581 83511106 -198682558 + MLT1H LTR MaLR 11 549 0 493 312 49 29 chr1 83512073 83512422 -198681242 + L1M4 LINE L1 5317 5672 -506 305 313 52 0 chr1 83512842 83512938 -198680726 + MER91C DNA MER1_type 40 140 0 1158 247 58 17 chr1 83513032 83513380 -198680284 + MLT1A1 LTR MaLR 4 365 0 855 261 68 56 chr1 83513878 83514200 -198679464 - LTR16C LTR ERVL -2 489 164 3314 182 25 16 chr1 83515226 83515864 -198677800 - MER21B LTR ERV1 -12 851 208 974 181 16 39 chr1 83515953 83516135 -198677529 - MER21B LTR ERV1 -685 178 1 21 0 0 0 chr1 83516651 83516672 -198676992 + AT_rich Low_complexity Low_complexity 1 21 0 201 129 0 0 chr1 83517621 83517652 -198676012 + (CTG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr1 83518958 83518981 -198674683 + AT_rich Low_complexity Low_complexity 1 23 0 333 152 80 80 chr1 83519184 83519309 -198674355 + MER63 DNA MER1_type 9 133 -797 * 500 273 13 0 chr1 83519307 83519457 -198674207 + MER63 DNA MER1_type 908 1059 -1 258 264 0 0 chr1 83520741 83520794 -198672870 - L2 LINE L2 -5 3267 3215 903 193 6 0 chr1 83523122 83523288 -198670376 + FRAM SINE Alu 1 167 -9 649 37 46 0 chr1 83523339 83523448 -198670216 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 210 370 69 29 chr1 83523468 83523641 -198670023 + L2 LINE L2 2904 3083 -189 257 250 183 0 chr1 83523909 83524013 -198669651 + HAL1 LINE L1 68 190 -2317 21 36 0 0 chr1 83524756 83524784 -198668880 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chr1 83524862 83524914 -198668750 + (TG)n Simple_repeat Simple_repeat 2 53 0 252 86 0 0 chr1 83525578 83525613 -198668051 + (TC)n Simple_repeat Simple_repeat 1 35 0 201 108 0 0 chr1 83527166 83527203 -198666461 + (TTA)n Simple_repeat Simple_repeat 1 37 0 3210 38 2 0 chr1 83527204 83527597 -198666067 - L1PA4 LINE L1 -18 6137 5744 29 0 0 0 chr1 83527597 83527626 -198666038 + AT_rich Low_complexity Low_complexity 1 29 0 253 387 48 8 chr1 83528287 83528411 -198665253 + L2 LINE L2 3144 3272 0 334 284 20 0 chr1 83528483 83528585 -198665079 + MIR SINE MIR 159 262 0 230 303 15 0 chr1 83529399 83529465 -198664199 + MER52A LTR ERV1 1 67 -1688 289 260 73 0 chr1 83529980 83530076 -198663588 + MER52A LTR ERV1 46 148 -1607 6002 192 40 53 chr1 83530096 83531434 -198662230 + MER52A LTR ERV1 434 1753 -2 268 275 109 22 chr1 83532394 83532532 -198661132 + L1ME3 LINE L1 5194 5343 -803 483 319 98 21 chr1 83532609 83532926 -198660738 + L1ME3 LINE L1 5420 5793 -369 2084 124 20 0 chr1 83532926 83533224 -198660440 + AluSx SINE Alu 1 304 -8 483 319 98 21 chr1 83533224 83533379 -198660285 + L1ME3 LINE L1 5793 5935 -227 189 0 0 0 chr1 83534367 83534388 -198659276 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 2028 133 3 0 chr1 83534397 83534691 -198658973 - AluSq SINE Alu -18 295 1 38 61 0 0 chr1 83534864 83534930 -198658734 + AT_rich Low_complexity Low_complexity 1 66 0 3348 166 83 35 chr1 83535045 83535769 -198657895 + Tigger2 DNA MER2_type 1 759 -1959 1140 200 57 4 chr1 83535822 83536067 -198657597 + Tigger2 DNA MER2_type 2451 2708 -10 326 242 0 42 chr1 83536314 83536409 -198657255 - L1MC4 LINE L1 -1339 6703 6613 209 235 0 12 chr1 83536455 83536536 -198657128 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 80 0 0 chr1 83536561 83536611 -198657053 + AT_rich Low_complexity Low_complexity 1 50 0 350 168 0 14 chr1 83536897 83536969 -198656695 + L1MD3 LINE L1 7539 7821 -174 1621 70 5 14 chr1 83536969 83537182 -198656482 + AluSg/x SINE Alu 76 286 -26 32 0 0 0 chr1 83537439 83537471 -198656193 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr1 83537512 83537539 -198656125 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr1 83537640 83537660 -198656004 + (C)n Simple_repeat Simple_repeat 1 20 0 396 0 0 0 chr1 83537686 83537730 -198655934 + (A)n Simple_repeat Simple_repeat 1 44 0 385 251 96 12 chr1 83537730 83537897 -198655767 + L1MD3 LINE L1 7808 7988 -7 201 220 203 17 chr1 83538063 83538122 -198655542 - L2 LINE L2 -10 3303 3234 242 269 0 0 chr1 83541030 83541082 -198652582 + MER3 DNA MER1_type 158 209 0 233 279 33 0 chr1 83541039 83541100 -198652564 - MER3 DNA MER1_type -119 90 28 * 270 293 101 0 chr1 83541174 83541273 -198652391 + L2 LINE L2 867 975 -2339 820 260 124 39 chr1 83541297 83541659 -198652005 + MLT2D LTR ERVL 2 394 -20 681 344 155 6 chr1 83541720 83542197 -198651467 + L2 LINE L2 1029 1576 -1738 350 311 158 24 chr1 83543957 83544121 -198649543 + MER5A DNA MER1_type 4 189 0 21 0 0 0 chr1 83544626 83544647 -198649017 + AT_rich Low_complexity Low_complexity 1 21 0 2241 109 0 0 chr1 83545590 83545893 -198647771 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr1 83547898 83547920 -198645744 + AT_rich Low_complexity Low_complexity 1 22 0 671 196 101 32 chr1 83548109 83548267 -198645397 + MIR SINE MIR 6 174 -88 806 167 15 0 chr1 83548267 83548399 -198645265 - MER70A LTR ERVL 0 472 339 2946 187 22 4 chr1 83548400 83549368 -198644296 - MER70A-int LTR ERVL -1059 3964 2959 * 4976 181 18 5 chr1 83549366 83550237 -198643427 - MER70A-int LTR ERVL -2520 2503 1621 4254 184 63 10 chr1 83550237 83551246 -198642418 - MER70A-int LTR ERVL -3832 1191 75 563 204 0 0 chr1 83551346 83551444 -198642220 - MER70A-int LTR ERVL -4925 98 1 2120 177 44 48 chr1 83551444 83551918 -198641746 - MER70A LTR ERVL 0 472 1 21 71 0 0 chr1 83553392 83553434 -198640230 + AT_rich Low_complexity Low_complexity 1 42 0 2145 116 0 0 chr1 83553487 83553781 -198639883 - AluSx SINE Alu -18 294 1 22 56 0 0 chr1 83553807 83553843 -198639821 + AT_rich Low_complexity Low_complexity 1 36 0 2112 110 10 0 chr1 83555967 83556266 -198637398 + AluY SINE Alu 1 302 -9 191 333 37 56 chr1 83556424 83556532 -198637132 - MIR SINE MIR -80 128 23 722 266 93 18 chr1 83557022 83557248 -198636416 + MIR SINE MIR 20 262 0 1002 180 98 42 chr1 83557702 83558045 -198635619 + MSTD LTR MaLR 1 396 0 207 0 0 0 chr1 83558223 83558246 -198635418 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 286 243 65 9 chr1 83558906 83559013 -198634651 + GA-rich Low_complexity Low_complexity 3 115 0 301 260 167 0 chr1 83559467 83559563 -198634101 + MLT1E LTR MaLR 48 159 -434 266 196 54 0 chr1 83559569 83559661 -198634003 + (TA)n Simple_repeat Simple_repeat 1 97 0 507 165 0 0 chr1 83559661 83559746 -198633918 + MLT1E1 LTR MaLR 568 652 -2 482 305 102 15 chr1 83559810 83560007 -198633657 + MIR SINE MIR 36 249 -13 186 43 0 0 chr1 83560882 83560905 -198632759 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr1 83561608 83561635 -198632029 + AT_rich Low_complexity Low_complexity 1 27 0 256 321 19 104 chr1 83562257 83562469 -198631195 + L2 LINE L2 2898 3091 -181 549 270 75 49 chr1 83563053 83563320 -198630344 + L2 LINE L2 918 1191 -2123 200 200 0 0 chr1 83563424 83563464 -198630200 - L2 LINE L2 -4 3309 3270 452 100 114 0 chr1 83563488 83563558 -198630106 - AluJ/FRAM SINE Alu -16 296 219 268 327 69 0 chr1 83563877 83563978 -198629686 + MIR SINE MIR 49 156 -106 244 333 9 0 chr1 83565540 83565648 -198628016 - MER102a DNA MER1_type -1 329 221 2330 94 0 0 chr1 83566792 83567091 -198626573 + AluY SINE Alu 1 299 -12 292 57 0 0 chr1 83567167 83567202 -198626462 - tRNA-Val-GTG tRNA tRNA -39 37 3 5906 43 1 0 chr1 83567202 83567922 -198625742 + L1PA4 LINE L1 5434 6154 -1 204 296 0 0 chr1 83568434 83568505 -198625159 + (TTA)n Simple_repeat Simple_repeat 1 71 0 9587 161 5 10 chr1 83569277 83570974 -198622690 - L1P LINE L1 -1884 4262 2574 6225 90 16 0 chr1 83570974 83572195 -198621469 + L1PA10 LINE L1 4926 6163 -5 32 26 0 0 chr1 83572195 83572234 -198621430 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 83572688 83572729 -198620935 + AT_rich Low_complexity Low_complexity 1 41 0 981 184 0 0 chr1 83574416 83574579 -198619085 - FRAM SINE Alu -10 166 4 526 292 65 0 chr1 83575323 83575477 -198618187 + MIR SINE MIR 29 192 -70 689 354 40 18 chr1 83575478 83575922 -198617742 + L1M4 LINE L1 1216 1669 -5827 1896 281 56 56 chr1 83576361 83577509 -198616155 + L1M4 LINE L1 2049 3169 -4396 1348 233 11 3 chr1 83577509 83577796 -198615868 + AluJo SINE Alu 3 291 -11 1896 281 56 56 chr1 83577796 83578158 -198615506 + L1M4 LINE L1 3169 3530 -4035 509 267 82 45 chr1 83578160 83578516 -198615148 + L1M4 LINE L1 5892 6260 -1305 217 306 0 0 chr1 83580313 83580375 -198613289 - MIR3 SINE MIR -9 199 138 29 28 0 0 chr1 83581046 83581082 -198612582 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 83581401 83581433 -198612231 + AT_rich Low_complexity Low_complexity 1 32 0 270 383 78 0 chr1 83581960 83582101 -198611563 + MER5A DNA MER1_type 16 167 -22 417 160 13 13 chr1 83582442 83582517 -198611147 - HSMAR2 DNA Mariner -331 971 897 240 284 9 37 chr1 83582539 83582648 -198611016 - LTR33A LTR ERVL -415 108 3 258 286 80 40 chr1 83582855 83583030 -198610634 + MIR SINE MIR 77 258 -4 282 237 41 10 chr1 83583138 83583235 -198610429 - HsTC2 DNA Tc2 0 1900 1801 1882 260 109 9 chr1 83583251 83583901 -198609763 - HsTC2 DNA Tc2 -1182 716 2 21 0 0 0 chr1 83584128 83584149 -198609515 + AT_rich Low_complexity Low_complexity 1 21 0 213 276 144 71 chr1 83585403 83585743 -198607921 - L2 LINE L2 -62 3251 2887 1010 272 91 54 chr1 83585942 83586533 -198607131 + MLT1G LTR MaLR 15 590 0 21 57 0 0 chr1 83586744 83586779 -198606885 + AT_rich Low_complexity Low_complexity 1 35 0 270 95 0 0 chr1 83586880 83586922 -198606742 + (CA)n Simple_repeat Simple_repeat 1 42 0 297 265 4 0 chr1 83586984 83587070 -198606594 + MLT1H LTR MaLR 1 130 -419 322 223 0 47 chr1 83587108 83587256 -198606408 + G-rich Low_complexity Low_complexity 5 145 0 2075 127 0 0 chr1 83587346 83587668 -198605996 + AluSx SINE Alu 1 322 0 230 295 90 8 chr1 83587975 83588097 -198605567 - HsTC2 DNA Tc2 -1013 885 754 2283 108 3 0 chr1 83588563 83588869 -198604795 - AluSx SINE Alu -5 307 1 382 265 125 15 chr1 83589269 83589405 -198604259 - MLT1J1 LTR MaLR -275 171 21 873 73 81 0 chr1 83589617 83589741 -198603923 - MER85 DNA T2_type -5 134 1 222 269 139 19 chr1 83590990 83591098 -198602566 - MIR SINE MIR -72 190 70 540 266 65 24 chr1 83591658 83591827 -198601837 - MIR SINE MIR -29 233 58 21 0 0 0 chr1 83594028 83594049 -198599615 + AT_rich Low_complexity Low_complexity 1 21 0 1217 270 126 16 chr1 83594693 83595178 -198598486 + MER34 LTR ERV1 4 541 -1 294 73 49 24 chr1 83595451 83595533 -198598131 + (TA)n Simple_repeat Simple_repeat 2 85 0 26 30 0 0 chr1 83595793 83595826 -198597838 + AT_rich Low_complexity Low_complexity 1 33 0 2230 106 0 3 chr1 83596397 83596699 -198596965 - AluSx SINE Alu -10 302 2 1936 99 9 78 chr1 83596818 83597151 -198596513 + AluSg SINE Alu 1 310 0 1921 112 14 0 chr1 83597153 83597467 -198596197 + AluSp SINE Alu 1 318 0 726 146 77 0 chr1 83598359 83598489 -198595175 - AluSc SINE Alu -3 306 167 5472 257 30 5 chr1 83598901 83600153 -198593511 + L1M4b LINE L1 -567 716 -5568 1009 289 38 28 chr1 83600175 83600794 -198592870 + L1M4b LINE L1 1389 2149 -4414 339 297 42 53 chr1 83600769 83601126 -198592538 + L1MEc LINE L1 1894 2246 -4317 * 727 183 0 30 chr1 83601287 83601650 -198592014 + (CATTC)n Satellite Satellite 1 352 0 709 177 2 2 chr1 83601699 83602205 -198591459 + (CATTC)n Satellite Satellite 1 506 0 263 217 36 0 chr1 83602218 83602301 -198591363 + (CATTC)n Satellite Satellite 4 89 0 23 0 0 0 chr1 83602570 83602593 -198591071 + AT_rich Low_complexity Low_complexity 1 23 0 2012 123 25 0 chr1 83603002 83603169 -198590495 - AluSg SINE Alu -18 292 114 201 39 0 0 chr1 83603169 83603195 -198590469 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 2012 123 25 0 chr1 83603195 83603312 -198590352 - AluSg SINE Alu -196 114 1 2839 161 77 15 chr1 83603675 83603902 -198589762 + MER7C DNA MER2_type 1 212 -2816 185 65 32 0 chr1 83603902 83603933 -198589731 + (CTCA)n Simple_repeat Simple_repeat 1 32 0 2839 161 77 15 chr1 83603933 83604253 -198589411 + MER7C DNA MER2_type 212 582 -20 783 247 45 12 chr1 83604263 83604510 -198589154 + L1MA9 LINE L1 5950 6204 -108 4515 173 60 33 chr1 83604677 83605243 -198588421 + L1MA9 LINE L1 5229 5836 -476 405 86 0 0 chr1 83605243 83605301 -198588363 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 4515 173 60 33 chr1 83605301 83605791 -198587873 + L1MA9 LINE L1 5836 6312 0 1666 239 21 11 chr1 83605789 83606224 -198587440 + L1ME2 LINE L1 5725 6163 -1 * 1490 186 11 45 chr1 83606269 83606645 -198587019 + L1MB8 LINE L1 5811 6173 -5 1737 98 113 7 chr1 83606844 83607119 -198586545 - MLT2A1 LTR ERVL -52 392 89 2256 112 0 0 chr1 83607683 83607988 -198585676 + AluSx SINE Alu 1 305 -7 1626 165 4 18 chr1 83607999 83608278 -198585386 + AluJb SINE Alu 22 296 -16 24 53 0 0 chr1 83608478 83608516 -198585148 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr1 83608603 83608636 -198585028 + AT_rich Low_complexity Low_complexity 1 33 0 920 168 23 23 chr1 83609214 83609387 -198584277 - FRAM SINE Alu -6 170 1 1831 156 70 3 chr1 83610123 83610495 -198583169 - L1MB3 LINE L1 0 6183 5787 1349 194 106 28 chr1 83610525 83610608 -198583056 - MER7A DNA MER2_type -2694 344 269 2040 166 0 20 chr1 83610608 83610952 -198582712 - MER1B DNA MER1_type 0 337 1 1349 194 106 28 chr1 83610952 83611188 -198582476 - MER7A DNA MER2_type -2769 269 2 3772 197 22 33 chr1 83611191 83612593 -198581071 - L1MB3 LINE L1 -414 5769 4377 452 297 67 18 chr1 83612656 83612821 -198580843 + MIR SINE MIR 72 244 -18 323 242 262 17 chr1 83613645 83613823 -198579841 - MIR SINE MIR -15 247 27 189 175 0 0 chr1 83613845 83613885 -198579779 + CT-rich Low_complexity Low_complexity 3 42 0 314 283 10 30 chr1 83615227 83615326 -198578338 + L2 LINE L2 3217 3313 0 445 306 91 10 chr1 83615581 83615780 -198577884 - MIR SINE MIR -43 219 5 1129 170 0 21 chr1 83616156 83616350 -198577314 + AluJo SINE Alu 82 271 -41 381 314 74 60 chr1 83616380 83616481 -198577183 + HAL1 LINE L1 22 120 -2387 1234 244 31 65 chr1 83616481 83616961 -198576703 + LTR16B LTR ERVL 1 464 0 381 314 74 60 chr1 83616961 83617276 -198576388 + HAL1 LINE L1 120 444 -2063 1260 176 84 72 chr1 83617363 83617722 -198575942 + MLT1A1 LTR MaLR 1 363 -2 345 172 0 0 chr1 83617764 83617828 -198575836 + GA-rich Low_complexity Low_complexity 1 64 0 688 148 39 19 chr1 83617849 83618004 -198575660 + MER53 DNA DNA 1 158 -31 812 217 0 12 chr1 83618004 83618165 -198575499 + FRAM SINE Alu 1 158 -18 729 213 133 16 chr1 83618216 83618465 -198575199 + HAL1 LINE L1 1391 1668 -839 1227 252 141 21 chr1 83618591 83619075 -198574589 + MLT1F LTR MaLR 1 542 0 24 0 0 0 chr1 83619132 83619156 -198574508 + AT_rich Low_complexity Low_complexity 1 24 0 211 272 120 33 chr1 83621308 83621400 -198572264 + MIR3 SINE MIR 70 169 -39 23 33 0 0 chr1 83621615 83621645 -198572019 + AT_rich Low_complexity Low_complexity 1 30 0 2400 70 3 3 chr1 83621657 83621957 -198571707 - AluY SINE Alu -11 300 1 261 139 0 0 chr1 83622013 83622056 -198571608 + (TTCC)n Simple_repeat Simple_repeat 3 45 0 1077 287 80 16 chr1 83622108 83622572 -198571092 - MLT1H LTR MaLR 0 549 3 937 126 5 99 chr1 83623966 83624157 -198569507 - MLT2B2 LTR ERVL 0 515 343 228 254 109 127 chr1 83624176 83624396 -198569268 + L2 LINE L2 2864 3079 -193 2041 162 112 16 chr1 83624419 83624802 -198568862 - MSTA LTR MaLR 0 428 9 274 252 233 0 chr1 83624862 83624965 -198568699 + L2 LINE L2 3182 3308 -5 21 0 0 0 chr1 83624984 83625005 -198568659 + AT_rich Low_complexity Low_complexity 1 21 0 32 81 0 0 chr1 83626131 83626205 -198567459 + AT_rich Low_complexity Low_complexity 1 74 0 2362 53 0 43 chr1 83626805 83627109 -198566555 + AluY SINE Alu 1 291 -20 2702 141 15 40 chr1 83627145 83627626 -198566038 + L1PA15 LINE L1 5682 6150 -15 50 51 0 0 chr1 83627773 83627851 -198565813 + AT_rich Low_complexity Low_complexity 1 78 0 252 291 64 64 chr1 83627977 83628087 -198565577 + MIR3 SINE MIR 47 156 -52 380 255 168 40 chr1 83628103 83628252 -198565412 - MER5A DNA MER1_type -12 177 10 2128 122 3 0 chr1 83629132 83629426 -198564238 + AluSx SINE Alu 1 295 -17 200 373 0 0 chr1 83629636 83629695 -198563969 - L2 LINE L2 -9 3263 3205 1493 204 7 7 chr1 83629845 83630130 -198563534 + AluJo SINE Alu 1 285 -27 2291 103 0 0 chr1 83630454 83630745 -198562919 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr1 83630745 83630771 -198562893 + AT_rich Low_complexity Low_complexity 1 26 0 309 237 0 26 chr1 83631281 83631357 -198562307 - L2 LINE L2 -9 3304 3231 28 0 0 0 chr1 83633507 83633535 -198560129 + AT_rich Low_complexity Low_complexity 1 28 0 1452 188 7 57 chr1 83633701 83633999 -198559665 - AluJo SINE Alu -19 283 1 22 0 0 0 chr1 83634717 83634739 -198558925 + AT_rich Low_complexity Low_complexity 1 22 0 474 335 40 0 chr1 83634939 83635112 -198558552 + LTR16C LTR ERVL 273 452 -39 426 302 58 7 chr1 83635216 83635355 -198558309 - MIR SINE MIR -66 196 51 248 208 0 14 chr1 83636218 83636290 -198557374 + GA-rich Low_complexity Low_complexity 1 71 0 1605 197 0 20 chr1 83636374 83636674 -198556990 + AluJo SINE Alu 6 299 -13 2137 187 62 44 chr1 83637518 83638063 -198555601 - MER34B LTR ERV1 0 565 11 22 35 0 0 chr1 83638114 83638143 -198555521 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 83638948 83638972 -198554692 + AT_rich Low_complexity Low_complexity 1 24 0 473 254 0 58 chr1 83639104 83639242 -198554422 + MER31-int LTR ERV1 4340 4469 -467 22 35 0 0 chr1 83639824 83639853 -198553811 + AT_rich Low_complexity Low_complexity 1 29 0 279 196 0 0 chr1 83640189 83640240 -198553424 + MER92C LTR ERV1 494 544 -10 22 0 0 0 chr1 83640571 83640593 -198553071 + AT_rich Low_complexity Low_complexity 1 22 0 2098 202 54 94 chr1 83640792 83641549 -198552115 + LTR8A LTR ERV1 1 727 0 281 98 0 20 chr1 83642134 83642185 -198551479 + (TTTC)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr1 83644171 83644194 -198549470 + AT_rich Low_complexity Low_complexity 1 23 0 290 301 122 36 chr1 83644774 83644970 -198548694 + MIR SINE MIR 36 248 -14 417 242 0 70 chr1 83645135 83645263 -198548401 + MER91B DNA MER1_type 1 119 -71 430 228 65 0 chr1 83645286 83645378 -198548286 + MER91B DNA MER1_type 93 190 0 240 223 41 8 chr1 83645454 83645575 -198548089 + (TA)n Simple_repeat Simple_repeat 2 126 0 1128 227 85 8 chr1 83646121 83646498 -198547166 + L1MC2 LINE L1 2128 2479 -3947 4943 184 29 31 chr1 83646698 83647750 -198545914 + L1MC2 LINE L1 5563 6611 -13 2053 125 0 0 chr1 83647847 83648144 -198545520 - AluSq SINE Alu -16 297 1 25 31 0 0 chr1 83648156 83648188 -198545476 + AT_rich Low_complexity Low_complexity 1 32 0 1767 212 11 14 chr1 83648264 83648622 -198545042 + MLT1A1 LTR MaLR 1 357 -8 351 356 156 11 chr1 83650637 83650817 -198542847 + MIR SINE MIR 31 236 -26 25 31 0 0 chr1 83650835 83650867 -198542797 + AT_rich Low_complexity Low_complexity 1 32 0 1593 183 45 0 chr1 83650885 83651015 -198542649 + AluJo SINE Alu 3 126 -186 225 0 0 0 chr1 83651015 83651040 -198542624 + (TA)n Simple_repeat Simple_repeat 2 26 0 1593 183 45 0 chr1 83651040 83651177 -198542487 + AluJo SINE Alu 126 282 -30 1198 290 18 47 chr1 83651628 83652142 -198541522 + LTR53 LTR ERVL 21 519 0 2189 83 42 0 chr1 83652332 83652620 -198541044 - AluSq SINE Alu -13 300 1 715 236 17 0 chr1 83653685 83653863 -198539801 - LTR16C LTR ERVL 0 491 311 308 371 40 13 chr1 83653863 83654014 -198539650 + L3b LINE CR1 1424 1578 -5 333 307 11 11 chr1 83654822 83654910 -198538754 - MIR3 SINE MIR -13 195 108 1344 196 55 10 chr1 83654982 83655293 -198538371 - L1MA9 LINE L1 -38 6274 5950 3090 170 19 21 chr1 83655303 83655886 -198537778 - MER7C DNA MER2_type -20 582 1 1933 132 24 0 chr1 83656249 83656366 -198537298 + AluSg SINE Alu 1 114 -196 201 39 0 0 chr1 83656366 83656392 -198537272 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1933 132 24 0 chr1 83656392 83656561 -198537103 + AluSg SINE Alu 114 294 -16 235 404 66 20 chr1 83656861 83657012 -198536652 + L2 LINE L2 3115 3272 0 21 36 0 0 chr1 83657266 83657294 -198536370 + AT_rich Low_complexity Low_complexity 1 28 0 284 303 68 37 chr1 83657320 83657482 -198536182 - L2 LINE L2 -8 3305 3139 25 51 0 0 chr1 83658599 83658638 -198535026 + AT_rich Low_complexity Low_complexity 1 39 0 239 375 98 29 chr1 83659700 83659945 -198533719 + L2 LINE L2 2716 2977 -337 628 338 159 19 chr1 83660161 83660844 -198532820 - L2 LINE L2 -828 2486 1681 300 53 0 0 chr1 83660844 83660882 -198532782 + (TG)n Simple_repeat Simple_repeat 2 39 0 628 338 159 19 chr1 83660882 83660971 -198532693 - L2 LINE L2 -1633 1681 1606 591 373 65 30 chr1 83661160 83661790 -198531874 - L2 LINE L2 -2099 1215 564 2186 161 94 60 chr1 83662011 83662576 -198531088 - LTR60 LTR ERV1 -2 584 1 355 345 69 0 chr1 83663731 83663847 -198529817 - L2 LINE L2 0 3272 3149 1227 264 39 12 chr1 83665240 83665646 -198528018 + LTR52 LTR ERVL 1 417 -4 238 299 35 58 chr1 83666152 83666239 -198527425 + MIR3 SINE MIR 1 85 -123 6917 137 14 6 chr1 83666239 83667694 -198525970 + L1MA1 LINE L1 4835 6302 0 21 0 0 0 chr1 83667694 83667715 -198525949 + AT_rich Low_complexity Low_complexity 1 21 0 2231 172 42 21 chr1 83667806 83668231 -198525433 - Tigger2a DNA MER2_type 0 434 1 229 271 0 0 chr1 83668701 83668749 -198524915 + polypyrimidine Low_complexity Low_complexity 1 48 0 1284 89 0 0 chr1 83669122 83669302 -198524362 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2270 108 0 16 chr1 83669304 83669620 -198524044 - AluSx SINE Alu -1 311 1 625 324 107 19 chr1 83669920 83670238 -198523426 + MLT1K LTR MaLR 233 578 -10 186 324 0 29 chr1 83670242 83670310 -198523354 + L2 LINE L2 3121 3186 -86 23 54 0 0 chr1 83670613 83670650 -198523014 + AT_rich Low_complexity Low_complexity 1 37 0 28 0 0 0 chr1 83671469 83671497 -198522167 + AT_rich Low_complexity Low_complexity 1 28 0 364 343 61 40 chr1 83672027 83672225 -198521439 - MIR SINE MIR -35 227 26 28 79 0 0 chr1 83672407 83672470 -198521194 + AT_rich Low_complexity Low_complexity 1 63 0 2044 164 5 36 chr1 83674102 83674487 -198519177 - THE1C LTR MaLR 0 375 3 9708 114 39 37 chr1 83674489 83676067 -198517597 - THE1C-int LTR MaLR 0 1580 1 1979 172 33 11 chr1 83676067 83676434 -198517230 - THE1C LTR MaLR 0 375 1 1573 185 3 47 chr1 83676927 83677225 -198516439 + AluJo SINE Alu 1 285 -27 28 48 0 0 chr1 83678817 83678859 -198514805 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 83680208 83680237 -198513427 + AT_rich Low_complexity Low_complexity 1 29 0 211 326 164 48 chr1 83682964 83683442 -198510222 + L2 LINE L2 2516 3039 -233 1300 303 40 22 chr1 83683869 83684586 -198509078 - L1MEc LINE L1 -1419 4796 4067 366 270 195 23 chr1 83684666 83685298 -198508366 - L1MEc LINE L1 -2958 3257 2516 532 323 58 31 chr1 83685362 83685934 -198507730 - L1MEc LINE L1 -3933 2463 1877 1312 194 18 103 chr1 83686025 83686423 -198507241 + MLT1A2 LTR MaLR 11 374 0 194 330 75 43 chr1 83686797 83686891 -198506773 + L2 LINE L2 3180 3276 -37 21 36 0 0 chr1 83688411 83688439 -198505225 + AT_rich Low_complexity Low_complexity 1 28 0 248 293 17 0 chr1 83689805 83689863 -198503801 - L2 LINE L2 -4 3268 3210 233 187 132 66 chr1 83690571 83690662 -198503002 - MLT1I LTR MaLR -38 371 275 327 295 50 43 chr1 83691155 83691294 -198502370 + MER5B DNA MER1_type 28 167 -11 187 152 43 0 chr1 83691367 83691413 -198502251 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 282 270 81 35 chr1 83691414 83691588 -198502076 + L1ME4a LINE L1 5935 6116 -5 341 337 88 24 chr1 83695007 83695212 -198498452 + MIR SINE MIR 5 222 -40 2178 114 0 3 chr1 83695964 83696261 -198497403 - AluY SINE Alu -15 296 1 348 64 0 0 chr1 83696607 83696654 -198497010 + (CA)n Simple_repeat Simple_repeat 2 48 0 380 374 78 16 chr1 83697227 83697548 -198496116 - L2 LINE L2 -55 3258 2918 2199 141 13 16 chr1 83697637 83698013 -198495651 + THE1C LTR MaLR 1 375 0 1024 249 122 39 chr1 83698015 83698376 -198495288 + MSTD LTR MaLR 6 396 0 275 270 54 14 chr1 83698376 83698450 -198495214 - L2 LINE L2 -560 2754 2678 5124 284 96 19 chr1 83698525 83700372 -198493292 - L2 LINE L2 -1123 2191 203 334 292 15 36 chr1 83701219 83701356 -198492308 + MER94 DNA DNA 1 134 0 1140 113 0 0 chr1 83702630 83702870 -198490794 + (TA)n Simple_repeat Simple_repeat 1 240 0 616 262 42 12 chr1 83702992 83703160 -198490504 - MIR SINE MIR -11 251 79 229 130 22 0 chr1 83703161 83703207 -198490457 + (TTA)n Simple_repeat Simple_repeat 3 49 0 812 192 59 36 chr1 83703209 83703428 -198490236 + MLT1A2 LTR MaLR 151 374 0 181 369 36 9 chr1 83703644 83703755 -198489909 - L2 LINE L2 -508 2806 2693 341 323 8 0 chr1 83704376 83704503 -198489161 + L1ME1 LINE L1 6033 6160 -6 828 100 0 0 chr1 83704980 83705100 -198488564 + (TA)n Simple_repeat Simple_repeat 1 120 0 654 244 42 12 chr1 83705222 83705390 -198488274 - MIR SINE MIR -11 251 79 192 143 0 0 chr1 83705399 83705441 -198488223 + (TAA)n Simple_repeat Simple_repeat 3 44 0 181 369 36 9 chr1 83705876 83705987 -198487677 - L2 LINE L2 -508 2806 2693 341 323 8 0 chr1 83706578 83706705 -198486959 + L1ME1 LINE L1 6033 6160 -6 225 319 89 31 chr1 83707451 83707642 -198486022 + MIR SINE MIR 20 221 -41 717 268 34 6 chr1 83710269 83710448 -198483216 - MLT1I LTR MaLR -1 408 225 1335 175 105 18 chr1 83711485 83711770 -198481894 + AluJo SINE Alu 1 310 -2 280 224 112 47 chr1 83714266 83714373 -198479291 - MER103 DNA DNA -50 116 3 926 326 103 28 chr1 83715570 83716367 -198477297 + L2 LINE L2 2460 3313 0 407 304 152 18 chr1 83716848 83717019 -198476645 - MIR SINE MIR -61 201 8 250 404 62 33 chr1 83717099 83717339 -198476325 - L2 LINE L2 -20 3252 3006 2399 235 30 39 chr1 83717792 83718431 -198475233 + MER82 DNA MER2_type 1 633 -20 1929 214 28 17 chr1 83718742 83719204 -198474460 - MLT1C LTR MaLR 0 467 1 1132 60 11 22 chr1 83719275 83719375 -198474289 + (TTCC)n Simple_repeat Simple_repeat 1 278 0 1132 60 11 22 chr1 83719375 83719557 -198474107 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1801 144 11 7 chr1 83719578 83719856 -198473808 - AluSx SINE Alu -33 279 1 286 227 27 13 chr1 83719959 83720034 -198473630 + MIR SINE MIR 178 253 -9 198 171 0 0 chr1 83720261 83720302 -198473362 + (TATG)n Simple_repeat Simple_repeat 2 42 0 333 0 0 0 chr1 83721153 83721190 -198472474 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 83721305 83721328 -198472336 + AT_rich Low_complexity Low_complexity 1 23 0 2408 129 6 3 chr1 83722245 83722608 -198471056 + THE1B LTR MaLR 1 364 0 328 333 0 0 chr1 83723786 83723876 -198469788 + MER91A DNA MER1_type 1 90 -106 212 349 93 0 chr1 83723930 83724016 -198469648 + MER91A DNA MER1_type 100 193 -3 22 56 0 0 chr1 83724400 83724436 -198469228 + AT_rich Low_complexity Low_complexity 1 36 0 250 331 76 28 chr1 83725343 83725488 -198468176 + L2 LINE L2 3147 3298 -15 14090 137 29 7 chr1 83726287 83728602 -198465062 + Tigger1 DNA MER2_type 54 2417 -1 1397 100 5 0 chr1 83728853 83729053 -198464611 - L1PA13 LINE L1 -19 6144 5944 972 389 120 19 chr1 83729057 83730624 -198463040 - L2 LINE L2 -60 3253 1464 10221 117 30 5 chr1 83730637 83732234 -198461430 - L1PA8 LINE L1 -1304 4842 3206 6171 101 6 7 chr1 83732234 83733548 -198460116 + L1PA8 LINE L1 4844 6159 -13 608 345 115 5 chr1 83733560 83733942 -198459722 - L2 LINE L2 -1857 1457 1034 22 0 0 0 chr1 83734192 83734214 -198459450 + AT_rich Low_complexity Low_complexity 1 22 0 294 306 18 121 chr1 83734338 83734573 -198459091 + MIR SINE MIR 37 242 -20 3088 179 64 19 chr1 83734606 83735247 -198458417 - MER49 LTR ERV1 -10 913 244 2465 261 57 24 chr1 83736137 83736858 -198456806 - MER21B LTR ERV1 -104 759 15 761 95 40 0 chr1 83736858 83737241 -198456423 + (TA)n Simple_repeat Simple_repeat 1 398 0 22 0 0 0 chr1 83737472 83737494 -198456170 + AT_rich Low_complexity Low_complexity 1 22 0 284 48 24 0 chr1 83737494 83737536 -198456128 + (TA)n Simple_repeat Simple_repeat 2 44 0 391 290 60 76 chr1 83737538 83737855 -198455809 - L2 LINE L2 -30 3283 2972 297 301 117 31 chr1 83738563 83738889 -198454775 - L1MC4a LINE L1 -1659 6149 5796 1563 242 76 19 chr1 83738950 83739467 -198454197 + MLT1E3 LTR MaLR 1 598 -26 1756 159 70 8 chr1 83740091 83740463 -198453201 - L1MB3 LINE L1 -2 6181 5787 1349 194 106 28 chr1 83740493 83740576 -198453088 - MER7A DNA MER2_type -2694 344 269 2061 163 0 20 chr1 83740576 83740920 -198452744 - MER1B DNA MER1_type 0 337 1 1349 194 106 28 chr1 83740920 83741156 -198452508 - MER7A DNA MER2_type -2769 269 2 2571 176 8 63 chr1 83741159 83741879 -198451785 - L1MB3 LINE L1 -414 5769 5089 551 226 101 40 chr1 83741979 83742178 -198451486 - MLT1C LTR MaLR -256 211 1 207 217 0 0 chr1 83742908 83742968 -198450696 + T-rich Low_complexity Low_complexity 1 60 0 690 188 0 0 chr1 83743866 83743983 -198449681 - MLT1E2 LTR MaLR -3 623 507 5532 158 50 10 chr1 83743986 83745717 -198447947 - L1MA5A LINE L1 -4 6293 4490 743 231 106 21 chr1 83745719 83746131 -198447533 - MLT1E2 LTR MaLR -123 503 2 228 336 18 18 chr1 83746436 83746546 -198447118 + MLT1J LTR MaLR 389 498 -13 21 0 0 0 chr1 83747432 83747453 -198446211 + AT_rich Low_complexity Low_complexity 1 21 0 266 270 88 35 chr1 83747922 83748086 -198445578 + MIR SINE MIR 16 192 -57 1271 216 56 7 chr1 83748361 83748648 -198445016 - MLT1E3 LTR MaLR 0 624 324 2155 210 15 11 chr1 83748661 83749189 -198444475 - L1MB3 LINE L1 -1056 5090 4561 1920 152 36 33 chr1 83749189 83749552 -198444112 - THE1B LTR MaLR 0 364 1 9173 131 76 19 chr1 83749552 83751047 -198442617 - THE1B-int LTR MaLR 0 1580 1 1985 162 58 3 chr1 83751047 83751392 -198442272 - THE1B LTR MaLR 0 364 1 3959 196 30 88 chr1 83751392 83752511 -198441153 - L1MB3 LINE L1 -1581 4565 3511 659 230 7 7 chr1 83752550 83752685 -198440979 - MLT1E1 LTR MaLR -514 140 6 2011 153 0 0 chr1 83752925 83753213 -198440451 + AluSx SINE Alu 7 294 -18 256 241 0 0 chr1 83753510 83753564 -198440100 + L1M4 LINE L1 4254 4307 -1839 218 160 20 0 chr1 83753628 83753678 -198439986 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1021 244 8 4 chr1 83753818 83754056 -198439608 - MLT1D LTR MaLR -8 497 259 575 193 0 9 chr1 83754097 83754206 -198439458 - MLT1-int LTR MaLR -856 515 408 738 215 44 58 chr1 83754206 83754411 -198439253 - MLT1-int LTR MaLR -211 1160 959 604 324 18 18 chr1 83754518 83754743 -198438921 - MLT1-int LTR MaLR -484 887 663 1319 173 72 75 chr1 83754802 83755148 -198438516 - MLT1-int LTR MaLR -710 661 317 1903 213 79 0 chr1 83755148 83755542 -198438122 - MER74C LTR ERVL 0 460 36 403 179 24 0 chr1 83755542 83755626 -198438038 + L1MA7 LINE L1 6206 6291 0 738 215 85 40 chr1 83756653 83756853 -198436811 - MER63A DNA MER1_type -1 209 1 326 219 85 0 chr1 83757026 83757108 -198436556 + L2 LINE L2 3223 3311 -2 258 309 57 31 chr1 83758046 83758293 -198435371 - L1M4 LINE L1 -1708 4438 4183 853 246 75 75 chr1 83758311 83758570 -198435094 + LTR16A1 LTR ERVL 48 309 -148 840 199 61 48 chr1 83758570 83758801 -198434863 - MER106A DNA MER1_type -2 234 1 853 246 75 75 chr1 83758801 83758899 -198434765 + LTR16A1 LTR ERVL 308 405 -52 299 309 16 8 chr1 83758975 83759098 -198434566 - L1M4 LINE L1 -1536 4610 4487 865 105 86 26 chr1 83759239 83759391 -198434273 - L1PA10 LINE L1 -3 6165 6005 2299 191 5 12 chr1 83759614 83760034 -198433630 + MER47B DNA MER2_type 1 417 -1 8866 111 19 5 chr1 83760237 83761504 -198432160 + HSMAR1 DNA Mariner 1 1285 -2 350 321 0 9 chr1 83761543 83761652 -198432012 - MIR3 SINE MIR 0 208 101 270 351 40 40 chr1 83761929 83762103 -198431561 + L2 LINE L2 2611 2784 -530 21 0 0 0 chr1 83762669 83762690 -198430974 + AT_rich Low_complexity Low_complexity 1 21 0 521 213 16 0 chr1 83763135 83763262 -198430402 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 2022 207 57 52 chr1 83764117 83764750 -198428914 + MER92B LTR ERV1 1 636 0 269 245 10 82 chr1 83765399 83765497 -198428167 + MER5A DNA MER1_type 12 102 -87 429 95 0 0 chr1 83765986 83766049 -198427615 + (CA)n Simple_repeat Simple_repeat 1 63 0 536 319 114 36 chr1 83766268 83766679 -198426985 - L1M4 LINE L1 -3365 2781 2339 376 288 89 69 chr1 83766709 83767367 -198426297 - MER77 LTR ERV1 -6 599 56 339 253 0 0 chr1 83767587 83767678 -198425986 + L1ME LINE L1 5407 5497 -665 278 169 77 0 chr1 83767743 83767808 -198425856 + L1ME3A LINE L1 6092 6161 -9 1380 219 126 14 chr1 83768388 83768808 -198424856 - MLT1C LTR MaLR 0 467 1 2079 95 52 5 chr1 83768904 83769292 -198424372 - LTR7 LTR ERV1 0 450 1 517 316 60 77 chr1 83769580 83770217 -198423447 + L2 LINE L2 2562 3252 -20 21 71 0 0 chr1 83770243 83770285 -198423379 + AT_rich Low_complexity Low_complexity 1 42 0 2262 88 7 3 chr1 83771532 83771840 -198421824 - AluY SINE Alu -2 309 1 188 312 130 0 chr1 83772543 83772620 -198421044 - L2 LINE L2 -7 3265 3179 25 0 0 0 chr1 83772659 83772684 -198420980 + AT_rich Low_complexity Low_complexity 1 25 0 235 302 79 16 chr1 83773709 83773835 -198419829 - MIR SINE MIR -3 259 126 21 57 0 0 chr1 83774271 83774306 -198419358 + AT_rich Low_complexity Low_complexity 1 35 0 1842 98 0 68 chr1 83775018 83775313 -198418351 + AluSq SINE Alu 1 275 -38 198 0 0 0 chr1 83775313 83775335 -198418329 + (GAA)n Simple_repeat Simple_repeat 2 23 0 2002 117 0 49 chr1 83775583 83775891 -198417773 - AluSc SINE Alu -11 298 6 442 318 99 14 chr1 83776370 83776581 -198417083 - MIR SINE MIR -14 248 20 307 377 53 0 chr1 83777338 83777452 -198416212 - L2 LINE L2 0 3272 3153 290 301 148 44 chr1 83777693 83778235 -198415429 - L2 LINE L2 -428 2886 2289 200 258 15 45 chr1 83778383 83778449 -198415215 + L2 LINE L2 3209 3272 0 321 273 81 10 chr1 83778649 83778748 -198414916 + L2 LINE L2 3208 3313 0 2155 99 0 0 chr1 83779753 83780056 -198413608 - L1PA13 LINE L1 -3 6160 5858 210 250 0 0 chr1 83780713 83780769 -198412895 + (CATA)n Simple_repeat Simple_repeat 4 59 0 567 176 19 9 chr1 83780770 83780878 -198412786 - MER6 DNA MER2_type -4 861 753 13685 129 41 56 chr1 83780879 83783452 -198410212 + L1P LINE L1 2 2535 -3611 348 89 0 0 chr1 83783458 83783545 -198410119 + Alu SINE Alu 238 324 0 4019 154 78 1 chr1 83783556 83784264 -198409400 - MER6 DNA MER2_type -102 763 2 306 0 0 0 chr1 83784267 83784301 -198409363 + (TG)n Simple_repeat Simple_repeat 1 34 0 242 250 66 0 chr1 83784431 83784507 -198409157 + MLT1J2 LTR MaLR 83 163 -287 781 191 42 12 chr1 83784995 83785163 -198408501 + MER69A DNA AcHobo 4 176 -1 22 56 0 0 chr1 83786488 83786524 -198407140 + AT_rich Low_complexity Low_complexity 1 36 0 393 269 50 28 chr1 83786976 83787117 -198406547 - L2 LINE L2 -911 2403 2260 2060 171 20 3 chr1 83787244 83787589 -198406075 - MLT1A1 LTR MaLR -5 360 10 357 311 53 29 chr1 83787615 83787821 -198405843 - L2 LINE L2 -1215 2099 1889 336 265 128 0 chr1 83788445 83788562 -198405102 - MIR SINE MIR 0 262 131 1020 79 0 0 chr1 83788609 83788735 -198404929 + AluSg SINE Alu 1 126 -184 39 74 0 0 chr1 83788940 83789021 -198404643 + AT_rich Low_complexity Low_complexity 1 81 0 336 265 128 0 chr1 83789371 83789488 -198404176 - MIR SINE MIR 0 262 131 1732 148 26 33 chr1 83789535 83789840 -198403824 + AluSg SINE Alu 1 303 -7 476 385 53 6 chr1 83790659 83791017 -198402647 - ERVL LTR ERVL -337 5427 5053 242 228 76 22 chr1 83791853 83791945 -198401719 + L1ME4a LINE L1 5981 6077 -44 2179 137 14 6 chr1 83792222 83792579 -198401085 + MER46B DNA MER2_type 2 236 0 211 204 0 20 chr1 83792679 83792728 -198400936 + (TG)n Simple_repeat Simple_repeat 1 48 0 1956 187 21 10 chr1 83794745 83795130 -198398534 + MLT1B LTR MaLR 1 389 -1 434 313 98 0 chr1 83795749 83795912 -198397752 + MIR SINE MIR 67 245 -17 187 269 110 28 chr1 83795915 83796060 -198397604 - L2 LINE L2 -880 2434 2278 475 345 107 5 chr1 83796073 83796279 -198397385 + MIR SINE MIR 15 241 -21 7515 43 19 1 chr1 83796501 83797440 -198396224 - L1PA5 LINE L1 -1824 4322 3367 8111 49 0 0 chr1 83797441 83799224 -198394440 + L1PA5 LINE L1 4355 6147 -7 814 264 41 26 chr1 83799227 83799571 -198394093 + L1M4 LINE L1 4281 4629 -1517 34 79 0 0 chr1 83799592 83799668 -198393996 + AT_rich Low_complexity Low_complexity 1 76 0 389 159 0 0 chr1 83799668 83799737 -198393927 + L1M4 LINE L1 4645 4713 -1433 911 170 32 37 chr1 83799742 83799960 -198393704 - MLT1E3 LTR MaLR -8 616 400 603 221 229 42 chr1 83799983 83800277 -198393387 - MLT1E3 LTR MaLR -330 296 1 25 31 0 0 chr1 83800391 83800423 -198393241 + AT_rich Low_complexity Low_complexity 1 32 0 318 26 0 0 chr1 83802081 83802120 -198391544 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr1 83802307 83802329 -198391335 + AT_rich Low_complexity Low_complexity 1 22 0 536 237 77 108 chr1 83802506 83802894 -198390770 + LTR37A LTR ERV1 46 421 -5 219 343 121 10 chr1 83803410 83803509 -198390155 + L2 LINE L2 3096 3205 -67 381 217 139 17 chr1 83803590 83803705 -198389959 + MER39 LTR ERV1 11 139 -568 1546 176 36 29 chr1 83803718 83804025 -198389639 + MER39 LTR ERV1 357 665 -42 11081 166 27 34 chr1 83804681 83804809 -198388855 + L1P3 LINE L1 2 129 -6332 1807 135 29 0 chr1 83804809 83805130 -198388534 + AluSq SINE Alu 1 329 0 11081 166 27 34 chr1 83805130 83808340 -198385324 + L1P3 LINE L1 129 3398 -3063 922 291 109 9 chr1 83809730 83810080 -198383584 - MER57B LTR ERV1 -38 396 12 249 316 92 0 chr1 83810348 83810446 -198383218 + MLT1J2 LTR MaLR 240 346 -104 1233 189 102 0 chr1 83811680 83811924 -198381740 + MSTB LTR MaLR 3 271 -155 16487 90 9 1 chr1 83811928 83815039 -198378625 + L1PA7 LINE L1 2997 6135 -19 1110 185 38 24 chr1 83815061 83815272 -198378392 + MLT1A1 LTR MaLR 144 357 -8 948 251 63 60 chr1 83815271 83815618 -198378046 + MLT1B LTR MaLR 43 390 0 * 247 240 0 0 chr1 83815993 83816043 -198377621 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 1084 343 106 17 chr1 83816265 83817135 -198376529 - L2 LINE L2 -23 3290 2339 2241 110 0 0 chr1 83817381 83817673 -198375991 - AluSg SINE Alu -14 296 5 1192 141 16 88 chr1 83818926 83819231 -198374433 - L1MB8 LINE L1 -14 6164 5882 456 264 9 0 chr1 83819814 83819920 -198373744 + MIR SINE MIR 85 191 -71 339 183 0 0 chr1 83820371 83820442 -198373222 - L1MB7 LINE L1 0 6184 6114 1554 230 71 36 chr1 83820442 83821002 -198372662 + L1MC1 LINE L1 4753 5332 -814 665 221 41 0 chr1 83821002 83821173 -198372491 + FRAM SINE Alu 1 177 0 4696 179 23 35 chr1 83821178 83822163 -198371501 + L1MC1 LINE L1 5341 6314 -19 374 231 8 0 chr1 83822195 83822312 -198371352 + (TA)n Simple_repeat Simple_repeat 2 119 0 23 0 0 0 chr1 83822320 83822343 -198371321 + AT_rich Low_complexity Low_complexity 1 23 0 267 197 66 20 chr1 83822360 83822512 -198371152 + (TA)n Simple_repeat Simple_repeat 1 159 0 327 269 0 32 chr1 83822584 83822677 -198370987 - L1MC4 LINE L1 -1339 6703 6614 1915 230 38 48 chr1 83822682 83823261 -198370403 - L1MB7 LINE L1 -57 6127 5555 * 3366 173 14 16 chr1 83823260 83823320 -198370344 + L1MA5 LINE L1 3906 3965 -2181 1982 117 0 3 chr1 83823320 83823645 -198370019 + AluY SINE Alu 3 326 0 3366 173 14 16 chr1 83823645 83824248 -198369416 + L1MA5 LINE L1 3965 4568 -1578 1861 143 51 20 chr1 83824250 83824600 -198369064 + THE1C LTR MaLR 15 375 0 5707 159 36 27 chr1 83824600 83826325 -198367339 + L1MA5 LINE L1 4561 6300 0 629 196 26 111 chr1 83826333 83826522 -198367142 - L1MB7 LINE L1 -616 5568 5396 1837 266 83 54 chr1 83826535 83827436 -198366228 - L1MB7 LINE L1 -877 5269 4343 386 235 47 23 chr1 83827462 83827610 -198366054 - L1MB7 LINE L1 -2726 3420 3274 1113 118 0 0 chr1 83827610 83827788 -198365876 + (TTC)n Simple_repeat Simple_repeat 1 178 0 386 235 47 23 chr1 83827788 83827811 -198365853 - L1MB7 LINE L1 -2872 3274 3253 560 236 89 10 chr1 83827832 83828067 -198365597 - L1MB7 LINE L1 -3023 3123 2870 426 216 165 0 chr1 83828068 83828165 -198365499 + FLAM_A SINE Alu 1 113 -29 1867 219 14 6 chr1 83828182 83828543 -198365121 + L1PA15 LINE L1 21 384 -6403 * 2255 171 18 21 chr1 83828512 83829208 -198364456 + L1PA15 LINE L1 4915 5786 -1030 1361 237 3 0 chr1 83829208 83829503 -198364161 + AluJb SINE Alu 1 296 -16 2255 171 18 21 chr1 83829503 83829978 -198363686 + L1PA15 LINE L1 5786 6261 -555 2947 137 9 0 chr1 83829999 83830458 -198363206 + L1PA15 LINE L1 6352 6814 -2 380 87 0 43 chr1 83830514 83830606 -198363058 + (CAAAA)n Simple_repeat Simple_repeat 1 88 0 1924 247 44 17 chr1 83830646 83831355 -198362309 - L1MB7 LINE L1 -3291 2855 2128 30 27 0 0 chr1 83831378 83831415 -198362249 + AT_rich Low_complexity Low_complexity 1 37 0 1404 273 51 76 chr1 83831773 83832570 -198361094 - L1M4c LINE L1 -4443 2120 1194 393 302 68 36 chr1 83832572 83832794 -198360870 - L3 LINE CR1 -3 1574 1346 545 353 157 17 chr1 83832801 83833361 -198360303 - L3 LINE CR1 -407 1170 468 2131 127 3 0 chr1 83833361 83833668 -198359996 + AluSq SINE Alu 1 308 -5 545 353 157 17 chr1 83833668 83833889 -198359775 - L3 LINE CR1 -1109 468 279 265 365 9 0 chr1 83834042 83834149 -198359515 - MIR SINE MIR -17 245 138 303 228 22 43 chr1 83834180 83834272 -198359392 - MLT1J1 LTR MaLR 0 446 357 229 330 11 22 chr1 83834384 83834475 -198359189 - MLT1I LTR MaLR -249 160 71 237 260 26 13 chr1 83835877 83835954 -198357710 - MLT1J2 LTR MaLR -306 144 67 4691 136 12 12 chr1 83837339 83838087 -198355577 + L1PA15 LINE L1 5400 6147 -18 241 259 0 0 chr1 83838087 83838141 -198355523 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 24 32 0 0 chr1 83838419 83838450 -198355214 + AT_rich Low_complexity Low_complexity 1 31 0 259 211 22 0 chr1 83838468 83838558 -198355106 + (TA)n Simple_repeat Simple_repeat 1 92 0 705 214 48 7 chr1 83838642 83838787 -198354877 - FRAM SINE Alu -25 151 1 355 269 77 10 chr1 83839189 83839293 -198354371 + MER94 DNA DNA 19 129 -5 25 0 0 0 chr1 83839947 83839972 -198353692 + AT_rich Low_complexity Low_complexity 1 25 0 21 89 0 0 chr1 83840334 83840390 -198353274 + AT_rich Low_complexity Low_complexity 1 56 0 473 344 16 0 chr1 83840502 83840685 -198352979 + L2 LINE L2 1772 1957 -1357 1747 154 14 0 chr1 83840687 83841001 -198352663 + AluJb SINE Alu 1 318 0 30 45 0 0 chr1 83841474 83841518 -198352146 + AT_rich Low_complexity Low_complexity 1 44 0 684 212 233 0 chr1 83841728 83841964 -198351700 - L1ME3A LINE L1 -6 6164 5874 31 0 0 0 chr1 83842074 83842105 -198351559 + AT_rich Low_complexity Low_complexity 1 31 0 2223 120 0 0 chr1 83842741 83843049 -198350615 + AluSx SINE Alu 1 308 -4 566 264 96 86 chr1 83843194 83843580 -198350084 - MLT1J LTR MaLR -112 399 10 275 238 75 0 chr1 83843755 83843835 -198349829 - MIR SINE MIR -10 252 167 553 371 170 7 chr1 83845313 83845919 -198347745 + L3 LINE CR1 117 821 -756 24 0 0 0 chr1 83845988 83846012 -198347652 + AT_rich Low_complexity Low_complexity 1 24 0 224 381 157 0 chr1 83846051 83846185 -198347479 + L3 LINE CR1 974 1128 -449 863 347 82 45 chr1 83846350 83847180 -198346484 + L2 LINE L2 2434 3313 0 187 281 98 24 chr1 83847739 83847821 -198345843 + L3 LINE CR1 1353 1440 -137 188 329 27 14 chr1 83849509 83849582 -198344082 - L2 LINE L2 0 3272 3199 230 304 26 43 chr1 83852723 83852838 -198340826 - L2 LINE L2 -12 3301 3189 22 0 0 0 chr1 83852879 83852901 -198340763 + AT_rich Low_complexity Low_complexity 1 22 0 252 100 0 0 chr1 83854832 83854872 -198338792 + (T)n Simple_repeat Simple_repeat 1 40 0 1969 126 14 0 chr1 83855274 83855582 -198338082 + AluSg SINE Alu 1 310 0 21 0 0 0 chr1 83855886 83855907 -198337757 + AT_rich Low_complexity Low_complexity 1 21 0 3787 198 41 36 chr1 83855926 83857317 -198336347 + L1MB7 LINE L1 4787 6184 0 21 36 0 0 chr1 83857835 83857863 -198335801 + AT_rich Low_complexity Low_complexity 1 28 0 1404 193 23 57 chr1 83858063 83858363 -198335301 + AluJb SINE Alu 1 290 -22 385 289 31 31 chr1 83858972 83859100 -198334564 + L1MEd LINE L1 975 1102 -5017 28 0 0 0 chr1 83859218 83859246 -198334418 + AT_rich Low_complexity Low_complexity 1 28 0 972 278 70 52 chr1 83859324 83859824 -198333840 + MLT1J LTR MaLR 1 509 -2 322 300 186 0 chr1 83861027 83861167 -198332497 - MLT1J LTR MaLR 0 511 346 692 227 98 73 chr1 83861309 83861379 -198332285 + MLT1D LTR MaLR 3 70 -397 1004 238 120 28 chr1 83861379 83861736 -198331928 - MLT1B LTR MaLR 0 390 1 692 227 98 73 chr1 83861736 83862092 -198331572 + MLT1D LTR MaLR 70 435 -32 334 313 107 0 chr1 83862107 83862238 -198331426 - MLT1J LTR MaLR -366 145 1 905 295 54 54 chr1 83862352 83862799 -198330865 + MLT1J LTR MaLR 17 463 -48 1757 233 33 10 chr1 83863326 83863836 -198329828 - Charlie1b DNA MER1_type 0 523 2 4590 93 5 0 chr1 83863946 83864578 -198329086 - L1PA5 LINE L1 -4934 1212 578 32558 55 2 1 chr1 83864578 83869530 -198324134 + L1PA5 LINE L1 1197 6154 0 1850 220 16 0 chr1 83869751 83870138 -198323526 + L1M3 LINE L1 5311 5703 -465 203 291 36 0 chr1 83870774 83870829 -198322835 + L2 LINE L2 3216 3272 0 4513 165 97 13 chr1 83871526 83872440 -198321224 + L1MC1 LINE L1 5343 6333 0 1858 156 7 3 chr1 83872716 83873011 -198320653 - AluSx SINE Alu -16 296 1 184 104 21 62 chr1 83874986 83875082 -198318582 + (TAA)n Simple_repeat Simple_repeat 2 93 0 23 54 0 0 chr1 83875177 83875214 -198318450 + AT_rich Low_complexity Low_complexity 1 37 0 663 304 75 5 chr1 83876214 83876428 -198317236 + MIR SINE MIR 20 248 -14 26 50 0 0 chr1 83876600 83876640 -198317024 + AT_rich Low_complexity Low_complexity 1 40 0 484 175 32 24 chr1 83877467 83877593 -198316071 - Charlie5 DNA MER1_type -44 2568 2442 549 250 70 0 chr1 83877594 83877750 -198315914 + L1M4 LINE L1 3996 4162 -1984 254 294 55 9 chr1 83877742 83877851 -198315813 + L1M4 LINE L1 3687 3800 -2346 * 286 305 37 16 chr1 83877858 83878048 -198315616 + L1M4 LINE L1 3855 4048 -2098 21 0 0 0 chr1 83878260 83878281 -198315383 + AT_rich Low_complexity Low_complexity 1 21 0 208 263 10 71 chr1 83878656 83878755 -198314909 - L2 LINE L2 -75 3238 3146 238 235 95 117 chr1 83878825 83879004 -198314660 - L2 LINE L2 -340 2974 2686 6092 239 71 47 chr1 83879006 83881271 -198312393 + L1M4b LINE L1 13 2335 -4624 180 77 0 0 chr1 83881405 83881431 -198312233 + (TC)n Simple_repeat Simple_repeat 2 27 0 272 253 0 0 chr1 83881431 83881506 -198312158 + (TA)n Simple_repeat Simple_repeat 1 75 0 256 212 76 0 chr1 83881508 83881574 -198312090 + L1M4b LINE L1 2630 2700 -4438 654 281 66 77 chr1 83881590 83881929 -198311735 + L1MEc LINE L1 1738 2072 -4324 2170 86 4 0 chr1 83881929 83882209 -198311455 + AluY SINE Alu 17 297 -14 654 281 66 77 chr1 83882209 83882338 -198311326 + L1MEc LINE L1 2072 2201 -4195 23 33 0 0 chr1 83882434 83882464 -198311200 + AT_rich Low_complexity Low_complexity 1 30 0 1882 139 7 0 chr1 83884952 83885226 -198308438 + AluSx SINE Alu 11 286 -26 235 291 62 37 chr1 83885298 83885539 -198308125 + L1ME LINE L1 5611 5857 -264 289 297 41 14 chr1 83885752 83885897 -198307767 - L1MC4a LINE L1 -1868 5940 5792 557 261 68 25 chr1 83886042 83886096 -198307568 - L1MC4a LINE L1 -448 5673 5623 2198 150 67 59 chr1 83886096 83886556 -198307108 - MLT2C2 LTR ERVL 0 464 1 557 261 68 25 chr1 83886556 83886862 -198306802 - L1MC4a LINE L1 -498 5623 5293 617 325 119 31 chr1 83887025 83887565 -198306099 - L1MC4a LINE L1 -1130 5016 4376 2145 125 0 0 chr1 83887565 83887868 -198305796 - AluSc SINE Alu 0 309 7 617 325 119 31 chr1 83887868 83888160 -198305504 - L1MC4a LINE L1 -1770 4376 4111 30 27 0 0 chr1 83888163 83888200 -198305464 + AT_rich Low_complexity Low_complexity 1 37 0 251 343 142 15 chr1 83888703 83888907 -198304757 - L3 LINE CR1 -195 1382 1153 25 0 0 0 chr1 83888933 83888958 -198304706 + AT_rich Low_complexity Low_complexity 1 25 0 2101 83 0 0 chr1 83889018 83889282 -198304382 - AluSc SINE Alu -2 307 44 24 0 0 0 chr1 83890079 83890103 -198303561 + AT_rich Low_complexity Low_complexity 1 24 0 954 296 110 4 chr1 83890370 83890826 -198302838 + L1MC4a LINE L1 6292 6795 -1013 199 339 81 8 chr1 83890971 83891095 -198302569 + MIR SINE MIR 129 261 -1 371 389 56 0 chr1 83891564 83891726 -198301938 - L2 LINE L2 0 3272 3102 271 305 147 0 chr1 83891792 83891887 -198301777 - L2 LINE L2 -554 2760 2652 2506 64 0 0 chr1 83891969 83892280 -198301384 + AluY SINE Alu 1 311 0 298 241 107 74 chr1 83892297 83892461 -198301203 - MIR SINE MIR -27 235 66 23 0 0 0 chr1 83893885 83893908 -198299756 + AT_rich Low_complexity Low_complexity 1 23 0 2313 151 57 7 chr1 83894013 83894417 -198299247 + MSTB LTR MaLR 1 424 -2 189 200 186 14 chr1 83895632 83895702 -198297962 + L2 LINE L2 1969 2050 -1264 442 351 124 27 chr1 83895792 83896421 -198297243 + L2 LINE L2 2156 2845 -469 2493 202 29 57 chr1 83896636 83897289 -198296375 + MER92B LTR ERV1 2 636 0 299 355 179 28 chr1 83897425 83898335 -198295329 + L2 LINE L2 1930 2977 -337 1997 183 14 0 chr1 83898982 83899342 -198294322 - MLT1A1 LTR MaLR 0 365 1 189 0 0 0 chr1 83899935 83899956 -198293708 + (TAA)n Simple_repeat Simple_repeat 2 22 0 608 264 52 0 chr1 83899979 83900134 -198293530 + MIR SINE MIR 26 188 -74 2086 135 14 0 chr1 83900791 83901139 -198292525 + L1MA5A LINE L1 5935 6287 -10 2783 240 48 22 chr1 83901549 83902115 -198291549 - L1MD1 LINE L1 -369 6267 5717 234 62 0 0 chr1 83902115 83902147 -198291517 + (TG)n Simple_repeat Simple_repeat 2 33 0 2783 240 48 22 chr1 83902147 83902205 -198291459 - L1MD1 LINE L1 -919 5717 5662 2072 146 48 16 chr1 83902205 83902583 -198291081 + MLT1B LTR MaLR 1 390 0 2783 240 48 22 chr1 83902583 83904790 -198288874 - L1MD1 LINE L1 -974 5662 3290 4696 69 5 14 chr1 83904790 83905442 -198288222 + L1PB1 LINE L1 5323 5968 -183 811 75 0 0 chr1 83905434 83905541 -198288123 + L1PA10 LINE L1 6058 6164 -4 * 1274 107 0 20 chr1 83905583 83905780 -198287884 + L1PB1 LINE L1 5959 6151 0 1753 245 48 43 chr1 83905845 83906727 -198286937 - L1MD1 LINE L1 -3239 3301 2410 7135 36 10 0 chr1 83907373 83908242 -198285422 - L1PA4 LINE L1 -3 6152 5275 4156 39 0 0 chr1 83908242 83908753 -198284911 + L1PA4 LINE L1 4769 5279 -867 242 65 0 0 chr1 83908830 83908861 -198284803 + L1MA3 LINE L1 5916 5946 -359 4915 122 8 7 chr1 83908941 83909713 -198283951 - L1MA3 LINE L1 0 7724 6952 386 98 0 0 chr1 83909719 83909780 -198283884 + L1 LINE L1 4733 4793 -1353 19032 180 40 7 chr1 83909790 83916498 -198277166 - L1MA3 LINE L1 -745 6820 1 18304 51 5 0 chr1 83916541 83919657 -198274007 + L1PA5 LINE L1 3013 6152 -2 448 290 48 19 chr1 83919908 83920115 -198273549 + L1M4b LINE L1 12 224 -6635 3955 266 45 27 chr1 83920194 83922194 -198271470 + L1M4b LINE L1 2470 4476 -2481 6455 57 1 0 chr1 83923068 83923889 -198269775 + L1PA7 LINE L1 5332 6153 -1 192 111 0 0 chr1 83923933 83923969 -198269695 + (A)n Simple_repeat Simple_repeat 1 36 0 656 164 98 0 chr1 83924689 83924811 -198268853 + AluJo SINE Alu 1 134 -178 325 299 0 37 chr1 83924816 83924923 -198268741 - L1MC4 LINE L1 -1326 6716 6614 304 333 0 0 chr1 83924843 83924933 -198268731 + L1MC4 LINE L1 6614 6703 -1339 * 393 117 0 0 chr1 83925044 83925104 -198268560 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 320 292 67 48 chr1 83925471 83925680 -198267984 + L1MEc LINE L1 1842 2054 -4342 937 286 70 26 chr1 83925777 83926509 -198267155 + L1MEc LINE L1 2116 2879 -3336 1119 204 28 49 chr1 83927748 83927768 -198265896 - L1M2 LINE L1 -503 5809 5790 225 0 0 0 chr1 83927768 83927793 -198265871 + (CA)n Simple_repeat Simple_repeat 2 26 0 1119 204 28 49 chr1 83927793 83928056 -198265608 - L1M2 LINE L1 -522 5790 5532 24 0 0 0 chr1 83929329 83929353 -198264311 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr1 83929476 83929524 -198264140 + AT_rich Low_complexity Low_complexity 1 48 0 23 78 0 0 chr1 83930225 83930276 -198263388 + AT_rich Low_complexity Low_complexity 1 51 0 180 125 0 0 chr1 83930336 83930368 -198263296 + (A)n Simple_repeat Simple_repeat 1 32 0 455 271 175 0 chr1 83930410 83930587 -198263077 - MER58C DNA MER1_type -3 212 5 189 0 0 0 chr1 83930626 83930647 -198263017 + (CA)n Simple_repeat Simple_repeat 2 22 0 29 0 0 0 chr1 83930722 83930751 -198262913 + AT_rich Low_complexity Low_complexity 1 29 0 337 331 24 8 chr1 83931170 83931297 -198262367 + LTR67 LTR ERVL 428 556 -1 23 86 0 0 chr1 83931474 83931532 -198262132 + AT_rich Low_complexity Low_complexity 1 58 0 296 218 64 26 chr1 83931573 83931651 -198262013 + MIR SINE MIR 118 198 -64 1661 185 44 24 chr1 83931688 83932029 -198261635 + MER7A DNA MER2_type 1 346 0 561 273 8 0 chr1 83932156 83932277 -198261387 + L2 LINE L2 3187 3308 -5 224 332 17 13 chr1 83932392 83932420 -198261244 + MIR SINE MIR 1 27 -181 189 0 0 0 chr1 83932420 83932441 -198261223 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 224 332 17 13 chr1 83932441 83932517 -198261147 + MIR SINE MIR 27 106 -102 21 36 0 0 chr1 83932679 83932707 -198260957 + AT_rich Low_complexity Low_complexity 1 28 0 1653 171 4 4 chr1 83932742 83933023 -198260641 + AluJo SINE Alu 11 291 -21 24 0 0 0 chr1 83933371 83933395 -198260269 + AT_rich Low_complexity Low_complexity 1 24 0 2607 223 29 13 chr1 83933438 83934321 -198259343 - L1M2 LINE L1 -4455 2394 1261 331 214 239 0 chr1 83934329 83934426 -198259238 - MER21B LTR ERV1 -381 550 335 * 350 268 167 45 chr1 83934422 83934620 -198259044 - MLT1E3 LTR MaLR -402 222 1 1108 302 84 26 chr1 83934754 83935586 -198258078 - L1M4 LINE L1 -2258 4092 3213 476 270 60 118 chr1 83935629 83936114 -198257550 + MLT1J LTR MaLR 1 457 -54 22 70 0 0 chr1 83936166 83936209 -198257455 + AT_rich Low_complexity Low_complexity 1 43 0 263 327 144 14 chr1 83936476 83936684 -198256980 - L3 LINE CR1 -190 1387 1153 25 0 0 0 chr1 83936710 83936735 -198256929 + AT_rich Low_complexity Low_complexity 1 25 0 1972 113 0 0 chr1 83936794 83937059 -198256605 - AluSc SINE Alu -1 308 44 603 219 107 114 chr1 83987270 83987685 -198205979 - L1M4 LINE L1 -4989 1292 851 * 1185 307 33 23 chr1 83987682 83988171 -198205493 - L1M4 LINE L1 -5748 533 3 3255 192 93 25 chr1 83988182 83989077 -198204587 - L1MDa LINE L1 -4145 2395 1440 1369 265 137 40 chr1 83989122 83989597 -198204067 - L1MDa LINE L1 -5807 733 213 461 94 0 0 chr1 83989598 83989662 -198204002 - HERVL LTR ERVL -3482 2172 2109 1807 55 0 21 chr1 83989662 83989900 -198203764 + MLT2A1 LTR ERVL 210 442 -2 403 270 15 58 chr1 83989902 83990039 -198203625 - L1MDa LINE L1 -6324 216 86 393 164 164 0 chr1 83990186 83990259 -198203405 - L1MDa LINE L1 -6438 102 18 317 241 171 29 chr1 83991352 83991522 -198202142 + MLT1L LTR MaLR 420 613 -2 328 250 52 10 chr1 83993109 83993205 -198200459 + MIR SINE MIR 52 151 -111 654 258 49 73 chr1 83993242 83993529 -198200135 + L2 LINE L2 3033 3312 -1 26 74 0 0 chr1 83994824 83994878 -198198786 + AT_rich Low_complexity Low_complexity 1 54 0 21 57 0 0 chr1 83995709 83995744 -198197920 + AT_rich Low_complexity Low_complexity 1 35 0 183 294 98 11 chr1 83995917 83996009 -198197655 - L2 LINE L2 -1335 1979 1880 331 256 13 0 chr1 83997059 83997137 -198196527 + MER5A DNA MER1_type 52 130 -59 2808 167 41 29 chr1 83997363 83998029 -198195635 - L1MC2 LINE L1 -481 5863 5185 1848 65 115 4 chr1 83998075 83998336 -198195328 + AluYa8 SINE Alu 1 290 -20 197 186 14 0 chr1 83998443 83998513 -198195151 + (TA)n Simple_repeat Simple_repeat 2 72 0 4669 100 33 42 chr1 83999369 83999769 -198193895 + L1PB2 LINE L1 5397 5788 -363 270 0 0 0 chr1 83999769 83999799 -198193865 + (CA)n Simple_repeat Simple_repeat 2 31 0 4669 100 33 42 chr1 83999799 84000158 -198193506 + L1PB2 LINE L1 5788 6149 -2 4563 107 12 0 chr1 84000172 84000848 -198192816 + L1PA13 LINE L1 5476 6159 -4 397 260 93 96 chr1 84001347 84001754 -198191910 - MLT1H LTR MaLR -4 545 140 616 218 82 14 chr1 84001827 84001964 -198191700 + MIR SINE MIR 85 234 -28 2061 150 33 25 chr1 84001964 84002325 -198191339 + THE1B LTR MaLR 1 364 0 958 182 61 9 chr1 84002387 84002601 -198191063 + L1MCa LINE L1 2 226 -6200 * 3492 173 31 14 chr1 84002582 84003323 -198190341 + L1MCa LINE L1 871 1624 -4802 1063 147 50 45 chr1 84003323 84003521 -198190143 + THE1B LTR MaLR 166 364 0 1247 184 87 4 chr1 84003586 84003863 -198189801 + L1MCa LINE L1 1694 1993 -4433 1690 218 38 16 chr1 84003880 84004330 -198189334 + L1MCa LINE L1 2943 3402 -3024 957 200 0 16 chr1 84004651 84004836 -198188828 - L1PA16 LINE L1 -4 6162 5981 26 74 0 0 chr1 84005936 84005990 -198187674 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr1 84006122 84006151 -198187513 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr1 84006412 84006450 -198187214 + AT_rich Low_complexity Low_complexity 1 38 0 463 176 191 29 chr1 84006500 84006636 -198187028 + FRAM SINE Alu 1 158 -18 259 344 21 11 chr1 84008084 84008177 -198185487 - L3 LINE CR1 -454 1123 1030 223 333 0 0 chr1 84008294 84008360 -198185304 - L3 LINE CR1 -614 963 898 36 53 0 0 chr1 84008398 84008455 -198185209 + AT_rich Low_complexity Low_complexity 1 57 0 1787 217 113 66 chr1 84008776 84009490 -198184174 + L2 LINE L2 2159 2906 -408 221 300 62 12 chr1 84009768 84009848 -198183816 + MIR SINE MIR 67 150 -58 432 231 143 20 chr1 84012830 84012904 -198180760 - MIR SINE MIR -31 231 167 2157 74 0 18 chr1 84012904 84013189 -198180475 - AluY SINE Alu -15 296 17 432 231 143 20 chr1 84013189 84013261 -198180403 - MIR SINE MIR -95 167 67 1040 68 68 0 chr1 84014154 84014302 -198179362 - L1PA10 LINE L1 -4 6164 6007 25 90 0 0 chr1 84014809 84014876 -198178788 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr1 84014899 84014923 -198178741 + AT_rich Low_complexity Low_complexity 1 24 0 3419 145 118 3 chr1 84015056 84015724 -198177940 - Tigger3b DNA MER2_type -469 762 18 2321 67 0 10 chr1 84015789 84016089 -198177575 - AluY SINE Alu -14 297 1 896 105 15 15 chr1 84016254 84016387 -198177277 + AluSg/x SINE Alu 164 296 -14 1121 235 101 27 chr1 84019465 84019873 -198173791 - HsTC2 DNA Tc2 -3 1895 1282 423 221 18 35 chr1 84019875 84019988 -198173676 - HsTC2 DNA Tc2 -1155 743 633 359 193 211 28 chr1 84020210 84020319 -198173345 - HsTC2 DNA Tc2 -1274 624 496 617 302 45 0 chr1 84020320 84020499 -198173165 - HsTC2 DNA Tc2 -1683 215 29 22 0 0 0 chr1 84020786 84020808 -198172856 + AT_rich Low_complexity Low_complexity 1 22 0 3779 15 14 0 chr1 84023109 84023609 -198170055 - L1P1 LINE L1 -725 5430 4924 5582 28 0 0 chr1 84023609 84024259 -198169405 + L1PA3 LINE L1 5503 6152 -3 285 333 113 42 chr1 84024458 84024812 -198168852 + L2 LINE L2 2214 2592 -722 1505 295 87 26 chr1 84025698 84026379 -198167285 + L2 LINE L2 1527 2248 -1066 2489 87 62 0 chr1 84026646 84027001 -198166663 + MER51B LTR ERV1 1 377 0 876 304 46 25 chr1 84027016 84027454 -198166210 - LTR16A LTR ERVL -3 447 1 317 338 120 25 chr1 84028437 84028754 -198164910 - L1MEd LINE L1 -5311 808 462 21 36 0 0 chr1 84030035 84030063 -198163601 + AT_rich Low_complexity Low_complexity 1 28 0 254 297 0 14 chr1 84032213 84032287 -198161377 - MER5B DNA MER1_type -66 112 40 206 216 14 0 chr1 84032562 84032636 -198161028 + (CAATT)n Simple_repeat Simple_repeat 1 75 0 235 161 49 12 chr1 84032836 84032917 -198160747 + (TA)n Simple_repeat Simple_repeat 1 84 0 548 43 0 0 chr1 84035030 84035099 -198158565 - AluSp/q SINE Alu -19 294 226 17545 163 29 5 chr1 84035445 84042299 -198151365 + L1MA2 LINE L1 704 7723 0 216 200 0 0 chr1 84042302 84042347 -198151317 + A-rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr1 84043147 84043185 -198150479 + AT_rich Low_complexity Low_complexity 1 38 0 32 67 0 0 chr1 84043439 84043499 -198150165 + AT_rich Low_complexity Low_complexity 1 60 0 2778 151 79 5 chr1 84044280 84044838 -198148826 - L1MC2 LINE L1 -22 6322 5724 533 299 16 22 chr1 84045039 84045223 -198148441 + MER5A DNA MER1_type 2 184 -5 384 252 115 36 chr1 84046936 84047075 -198146589 + MIR SINE MIR 96 245 -17 215 318 54 39 chr1 84050223 84050352 -198143312 - MIR3 SINE MIR -74 134 4 538 311 94 5 chr1 84050539 84050751 -198142913 + MIR SINE MIR 24 254 -8 241 368 15 8 chr1 84050961 84051094 -198142570 - L2 LINE L2 -2566 748 615 338 331 8 8 chr1 84051202 84051323 -198142341 + MER5A DNA MER1_type 54 174 -15 195 296 34 45 chr1 84051681 84051769 -198141895 + MIR SINE MIR 168 254 -8 232 204 0 19 chr1 84052291 84052345 -198141319 + GA-rich Low_complexity Low_complexity 1 53 0 213 307 40 13 chr1 84052539 84052614 -198141050 - MIR SINE MIR -6 256 180 344 148 16 16 chr1 84052621 84052682 -198140982 + MIR SINE MIR 197 257 -5 227 353 57 8 chr1 84052707 84052829 -198140835 - MIR SINE MIR -86 176 49 7243 31 13 0 chr1 84053106 84054165 -198139499 - L1PA4 LINE L1 -2 6153 5088 2502 69 0 0 chr1 84054165 84054470 -198139194 - AluY SINE Alu -6 305 1 207 204 0 0 chr1 84055163 84055217 -198138447 + CT-rich Low_complexity Low_complexity 1 54 0 263 265 31 20 chr1 84055380 84055478 -198138186 - MIR SINE MIR -28 234 136 363 208 8 128 chr1 84059218 84059343 -198134321 + MIR SINE MIR 45 154 -108 4442 110 90 48 chr1 84059373 84060162 -198133502 - LTR12 LTR ERV1 0 826 5 2249 198 23 34 chr1 84060177 84060787 -198132877 - pTR5 LTR ERV1 -1093 1345 743 224 253 160 0 chr1 84060788 84060863 -198132801 + MIR SINE MIR 173 259 -3 1074 131 6 17 chr1 84060950 84061125 -198132539 + MER39B LTR ERV1 1 173 -480 671 126 17 126 chr1 84061127 84061310 -198132354 + MER39B LTR ERV1 502 653 0 354 277 21 11 chr1 84062314 84062408 -198131256 + L2 LINE L2 3219 3313 0 390 284 16 45 chr1 84063237 84063427 -198130237 - MIR SINE MIR -14 248 15 25 90 0 0 chr1 84063667 84063734 -198129930 + AT_rich Low_complexity Low_complexity 1 67 0 300 222 0 0 chr1 84064188 84064251 -198129413 - MER113 DNA MER1_type? -128 393 331 4360 116 90 99 chr1 84064796 84066235 -198127429 - pTR5 LTR ERV1 0 2438 382 1160 231 122 45 chr1 84066377 84066845 -198126819 - L1MC4 LINE L1 -1 8041 7538 3143 120 65 41 chr1 84066998 84067430 -198126234 - MER41C LTR ERV1 0 554 105 2422 8 0 0 chr1 84067430 84067695 -198125969 + AluYa5 SINE Alu 38 302 -9 3143 120 65 41 chr1 84067695 84067803 -198125861 - MER41C LTR ERV1 -449 105 1 3444 215 51 13 chr1 84067950 84068922 -198124742 - L1ME1 LINE L1 -4 6231 5227 579 261 90 17 chr1 84068947 84069181 -198124483 - L1ME1 LINE L1 -4323 2073 1823 629 288 48 24 chr1 84069188 84069847 -198123817 - L1ME1 LINE L1 -4832 1383 674 2539 46 3 0 chr1 84069971 84070276 -198123388 - AluY SINE Alu -5 306 1 386 299 104 31 chr1 84070549 84070837 -198122827 - L1ME1 LINE L1 -5989 407 99 225 386 60 38 chr1 84071096 84071280 -198122384 - MER5A DNA MER1_type -1 188 1 204 337 33 0 chr1 84071294 84071386 -198122278 + MER5A DNA MER1_type 9 103 -86 2599 180 29 14 chr1 84071386 84071433 -198122231 - MLT2B1 LTR ERVL -1 519 474 189 0 0 0 chr1 84071433 84071454 -198122210 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 2599 180 29 14 chr1 84071454 84071805 -198121859 - MLT2B1 LTR ERVL -46 474 108 1685 171 36 0 chr1 84071805 84072102 -198121562 + AluSx SINE Alu 1 307 0 2599 180 29 14 chr1 84072102 84072212 -198121452 - MLT2B1 LTR ERVL -412 108 1 524 375 9 5 chr1 84072683 84072936 -198120728 + MIR SINE MIR 9 262 0 1065 290 94 37 chr1 84073199 84073816 -198119848 - Charlie7 DNA MER1_type -1929 683 32 973 199 37 23 chr1 84074480 84074696 -198118968 - MER20 DNA MER1_type 0 219 1 181 349 16 79 chr1 84075113 84075239 -198118425 + L2 LINE L2 2999 3116 -156 643 327 85 16 chr1 84075399 84075647 -198118017 - Charlie8 DNA MER1_type -2152 265 1 22 99 0 0 chr1 84076118 84076189 -198117475 + AT_rich Low_complexity Low_complexity 1 71 0 262 268 18 71 chr1 84077185 84077297 -198116367 - MIR SINE MIR -46 216 111 190 314 0 20 chr1 84077373 84077424 -198116240 + MIR SINE MIR 23 72 -136 520 310 38 75 chr1 84077468 84077875 -198115789 - LTR16B LTR ERVL -3 447 1 528 241 35 14 chr1 84077957 84078102 -198115562 - MIR SINE MIR -21 241 94 343 143 76 118 chr1 84078182 84078301 -198115363 + L1ME4a LINE L1 5952 6065 -56 1666 283 74 14 chr1 84078310 84078865 -198114799 - MLT1G LTR MaLR 0 590 3 27 29 0 0 chr1 84078942 84078976 -198114688 + AT_rich Low_complexity Low_complexity 1 34 0 482 347 32 9 chr1 84079726 84079945 -198113719 + MIR SINE MIR 23 246 -16 297 191 0 48 chr1 84080290 84080353 -198113311 + L2 LINE L2 3254 3313 0 275 338 89 13 chr1 84080917 84081074 -198112590 - MIR SINE MIR -78 184 16 304 244 22 11 chr1 84081075 84081165 -198112499 + L2 LINE L2 2317 2407 -907 776 310 98 46 chr1 84081184 84081704 -198111960 + L2 LINE L2 2751 3301 -12 23 0 0 0 chr1 84083183 84083206 -198110458 + AT_rich Low_complexity Low_complexity 1 23 0 355 286 70 48 chr1 84084257 84084434 -198109230 + MIR SINE MIR 63 248 -14 1073 352 28 10 chr1 84084468 84085001 -198108663 - L2 LINE L2 -9 3304 2762 252 403 26 0 chr1 84085063 84085217 -198108447 - MIR SINE MIR -80 182 25 2480 156 11 23 chr1 84086275 84086710 -198106954 - Tigger2a DNA MER2_type -3 431 2 2137 170 6 3 chr1 84086993 84087357 -198106307 - MER47A DNA MER2_type 0 366 2 1949 138 13 45 chr1 84087437 84087813 -198105851 - THE1B LTR MaLR 0 364 1 329 357 98 45 chr1 84088385 84088741 -198104923 - L2 LINE L2 -903 2411 2037 302 349 34 27 chr1 84089489 84089638 -198104026 - MIR SINE MIR -94 168 19 1628 170 24 12 chr1 84090893 84091222 -198102442 - L1MB8 LINE L1 -2 6176 5844 327 301 231 0 chr1 84091690 84091833 -198101831 + MER5A DNA MER1_type 10 185 -4 207 0 0 0 chr1 84091898 84091921 -198101743 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4701 206 25 31 chr1 84092223 84092406 -198101258 + L1M1 LINE L1 1 184 -7381 2273 78 0 0 chr1 84092406 84092688 -198100976 + AluY SINE Alu 1 306 0 184 42 0 0 chr1 84092688 84092712 -198100952 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 4701 206 25 31 chr1 84092712 84093564 -198100100 + L1M1 LINE L1 184 1031 -6534 262 246 169 17 chr1 84093566 84093640 -198100024 + MIR SINE MIR 97 158 -104 243 0 0 0 chr1 84093640 84093667 -198099997 + (TG)n Simple_repeat Simple_repeat 2 28 0 262 246 169 17 chr1 84093667 84093710 -198099954 + MIR SINE MIR 158 232 -30 426 281 127 70 chr1 84093818 84094260 -198099404 - L1M4 LINE L1 -1563 4583 4117 315 304 72 2 chr1 84094264 84094404 -198099260 - L1M4 LINE L1 -2302 3844 3678 249 109 43 22 chr1 84094404 84094450 -198099214 - MLT1B LTR MaLR -1 389 343 1574 165 35 64 chr1 84094611 84094957 -198098707 - MLT1B LTR MaLR -54 336 1 205 152 0 0 chr1 84095019 84095052 -198098612 + CT-rich Low_complexity Low_complexity 2 34 0 230 206 14 0 chr1 84096062 84096135 -198097529 + (TA)n Simple_repeat Simple_repeat 1 74 0 192 77 0 0 chr1 84096377 84096403 -198097261 + (TTC)n Simple_repeat Simple_repeat 2 27 0 489 111 0 12 chr1 84096778 84096859 -198096805 + MADE1 DNA Mariner 1 80 0 958 31 85 8 chr1 84097015 84097144 -198096520 + MER85 DNA T2_type 1 139 0 1282 236 19 9 chr1 84098231 84098512 -198095152 + L1MA9 LINE L1 1 1356 -5750 2231 216 110 59 chr1 84098517 84099797 -198093867 + L1MA9 LINE L1 1297 2632 -4475 5076 156 59 53 chr1 84099811 84101236 -198092428 + L1MA9 LINE L1 5818 7272 0 333 284 131 31 chr1 84101244 84101565 -198092099 + HAL1 LINE L1 2145 2497 -10 22 0 0 0 chr1 84101565 84101587 -198092077 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 84102651 84102672 -198090992 + AT_rich Low_complexity Low_complexity 1 21 0 409 290 138 5 chr1 84102725 84102942 -198090722 + L1ME4a LINE L1 5610 5855 -266 253 193 35 0 chr1 84103120 84103177 -198090487 - L1ME4a LINE L1 -104 6017 5959 231 150 0 0 chr1 84103572 84103612 -198090052 - L1ME4a LINE L1 -211 5951 5912 719 288 63 0 chr1 84103738 84103943 -198089721 - MIR SINE MIR -30 232 15 368 342 46 14 chr1 84104037 84104318 -198089346 - L1M4 LINE L1 -1069 5077 4788 1348 278 99 37 chr1 84104335 84105518 -198088146 - L1M4 LINE L1 -2780 3366 2111 335 325 53 9 chr1 84105556 84105784 -198087880 - L1MEc LINE L1 -1283 5143 4906 1654 257 85 110 chr1 84105796 84106395 -198087269 - L1MEc LINE L1 -1762 4664 4051 388 78 0 0 chr1 84106395 84106459 -198087205 - L1MA8 LINE L1 0 6291 6228 1654 257 85 110 chr1 84106459 84106719 -198086945 - L1MEc LINE L1 -2375 4051 3786 461 301 0 22 chr1 84106719 84106855 -198086809 - MER63A DNA MER1_type -1 209 77 1654 257 85 110 chr1 84106855 84108077 -198085587 - L1MEc LINE L1 -2640 3786 2503 309 219 151 34 chr1 84108118 84108237 -198085427 - L1MEc LINE L1 -4130 2477 2345 2234 78 7 0 chr1 84108299 84108594 -198085070 + AluY SINE Alu 1 297 -14 21 0 0 0 chr1 84108748 84108769 -198084895 + AT_rich Low_complexity Low_complexity 1 21 0 497 254 75 74 chr1 84108778 84109386 -198084278 - L1MEc LINE L1 -4579 2028 1264 21 36 0 0 chr1 84109392 84109420 -198084244 + AT_rich Low_complexity Low_complexity 1 28 0 354 232 162 0 chr1 84109482 84109579 -198084085 + MER3 DNA MER1_type 1 113 -96 558 241 159 39 chr1 84109579 84109811 -198083853 + MLT1A1 LTR MaLR 1 260 -105 375 23 0 0 chr1 84109815 84109859 -198083805 + (TG)n Simple_repeat Simple_repeat 2 45 0 797 140 15 7 chr1 84109859 84109995 -198083669 - L1M2 LINE L1 -524 5788 5652 1038 257 40 0 chr1 84109998 84110247 -198083417 - MLT1G LTR MaLR -318 272 14 272 330 81 58 chr1 84110292 84110550 -198083114 - MLT1G-int LTR MaLR -34 1337 1074 530 226 44 7 chr1 84111819 84111956 -198081708 - MIR SINE MIR -6 256 115 240 357 10 10 chr1 84111969 84112067 -198081597 - L2 LINE L2 -303 2969 2872 321 358 51 51 chr1 84113046 84113261 -198080403 + MIR SINE MIR 15 229 -33 2148 110 0 0 chr1 84113422 84113712 -198079952 + AluSx SINE Alu 1 290 -22 651 277 122 56 chr1 84113947 84114280 -198079384 + MLT1J1 LTR MaLR 18 328 -118 13719 142 27 24 chr1 84114280 84115490 -198078174 + Tigger1 DNA MER2_type 4 1209 -1209 1533 126 126 8 chr1 84115490 84115769 -198077895 - AluSq SINE Alu 0 309 1 13719 142 27 24 chr1 84115769 84116761 -198076903 + Tigger1 DNA MER2_type 1209 2218 -200 1433 226 0 7 chr1 84116761 84117049 -198076615 - AluJo SINE Alu -26 286 1 13719 142 27 24 chr1 84117049 84117250 -198076414 + Tigger1 DNA MER2_type 2218 2417 -1 651 277 122 56 chr1 84117250 84117310 -198076354 + MLT1J1 LTR MaLR 328 437 -9 1039 285 26 47 chr1 84117605 84117988 -198075676 - LTR16A LTR ERVL -22 428 54 26 74 0 0 chr1 84118075 84118129 -198075535 + AT_rich Low_complexity Low_complexity 1 54 0 4646 166 42 28 chr1 84118170 84119444 -198074220 - L1PA16 LINE L1 0 6166 4873 * 10519 213 9 49 chr1 84119443 84120003 -198073661 + L1PA15-16 LINE L1 2700 3281 -3568 1862 112 60 0 chr1 84120003 84120270 -198073394 + AluSc SINE Alu 1 283 -26 10519 213 9 49 chr1 84120270 84120308 -198073356 + L1PA15-16 LINE L1 3281 3319 -3530 242 111 0 0 chr1 84120308 84120344 -198073320 + Alu SINE Alu 248 283 -16 10519 213 9 49 chr1 84120344 84121391 -198072273 + L1PA15-16 LINE L1 3319 4407 -2442 2511 27 7 3 chr1 84121391 84121689 -198071975 + AluY SINE Alu 1 299 -12 10519 213 9 49 chr1 84121689 84122990 -198070674 + L1PA15-16 LINE L1 4407 5554 -1295 281 303 98 15 chr1 84124492 84124624 -198069040 + L3b LINE CR1 1422 1564 -19 237 296 191 0 chr1 84126173 84126288 -198067376 - MIR SINE MIR -121 141 5 453 36 0 0 chr1 84126350 84126405 -198067259 + (TA)n Simple_repeat Simple_repeat 2 56 0 183 42 0 0 chr1 84126458 84126482 -198067182 + (TA)n Simple_repeat Simple_repeat 2 25 0 558 284 12 43 chr1 84126782 84126944 -198066720 - MER45A DNA AcHobo -2 176 20 445 356 27 7 chr1 84128357 84128503 -198065161 - L2 LINE L2 -3 3269 3121 874 287 193 20 chr1 84128578 84128965 -198064699 + L2 LINE L2 2629 2948 -365 2182 89 0 38 chr1 84128965 84129303 -198064361 - AluY SINE Alu 0 311 1 874 287 193 20 chr1 84129303 84129500 -198064164 + L2 LINE L2 2948 3304 -9 442 255 29 0 chr1 84129667 84129769 -198063895 - MIR SINE MIR -49 213 109 361 236 45 45 chr1 84129949 84130059 -198063605 - MER94 DNA DNA 0 134 25 1639 290 14 16 chr1 84130060 84130574 -198063090 - L1MEc LINE L1 -5848 548 36 317 277 136 13 chr1 84130996 84131151 -198062513 + L2 LINE L2 3130 3303 -10 1290 273 92 26 chr1 84131264 84131729 -198061935 - MLT1F1 LTR MaLR 0 567 72 320 264 101 31 chr1 84132218 84132347 -198061317 + MIR SINE MIR 1 138 -124 27 0 0 0 chr1 84134274 84134301 -198059363 + AT_rich Low_complexity Low_complexity 1 27 0 1877 129 4 4 chr1 84134767 84135046 -198058618 - AluSx SINE Alu -13 299 21 378 344 80 49 chr1 84135058 84135144 -198058520 + L2 LINE L2 2518 2600 -714 180 0 0 0 chr1 84135144 84135164 -198058500 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 378 344 80 49 chr1 84135164 84135365 -198058299 + L2 LINE L2 2600 2814 -500 308 195 81 11 chr1 84135646 84135733 -198057931 + MIR SINE MIR 111 203 -59 219 36 0 0 chr1 84135945 84135973 -198057691 + (TG)n Simple_repeat Simple_repeat 2 29 0 275 270 0 40 chr1 84136042 84136116 -198057548 - MIR SINE MIR -4 258 188 251 272 43 68 chr1 84136187 84136349 -198057315 - L2 LINE L2 -1211 2103 1946 1483 180 19 1 chr1 84136359 84136682 -198056982 + MER54A LTR ERVL 16 377 -524 2601 170 20 52 chr1 84136897 84137227 -198056437 + MER54A LTR ERVL 383 691 -210 2853 113 39 7 chr1 84137227 84137669 -198055995 + LTR22A LTR ERVK 1 456 -2 2601 170 20 52 chr1 84137669 84137874 -198055790 + MER54A LTR ERVL 691 901 0 313 332 34 5 chr1 84137874 84138079 -198055585 - L2 LINE L2 -1374 1940 1730 2129 101 28 0 chr1 84139127 84139414 -198054250 + AluSc SINE Alu 14 308 -1 216 229 59 12 chr1 84139690 84139860 -198053804 + (TA)n Simple_repeat Simple_repeat 2 179 0 244 136 12 62 chr1 84139873 84139977 -198053687 + (TTA)n Simple_repeat Simple_repeat 1 98 0 210 296 48 38 chr1 84141486 84141643 -198052021 + MIR SINE MIR 101 258 -4 439 306 38 12 chr1 84141996 84142156 -198051508 + MIR3 SINE MIR 37 200 -8 1798 209 41 78 chr1 84142451 84143038 -198050626 + MER34B LTR ERV1 1 565 0 285 332 91 96 chr1 84143106 84143480 -198050184 - L2 LINE L2 0 3272 2901 24 32 0 0 chr1 84143934 84143965 -198049699 + AT_rich Low_complexity Low_complexity 1 31 0 443 301 85 15 chr1 84144068 84144267 -198049397 + MIR SINE MIR 2 214 -48 24 53 0 0 chr1 84144387 84144425 -198049239 + AT_rich Low_complexity Low_complexity 1 38 0 342 291 66 70 chr1 84144514 84144603 -198049061 - MIR SINE MIR -17 245 157 2437 76 0 0 chr1 84144603 84144905 -198048759 - AluY SINE Alu -9 302 1 342 291 66 70 chr1 84144905 84145042 -198048622 - MIR SINE MIR -105 157 20 204 67 0 0 chr1 84145254 84145284 -198048380 + (A)n Simple_repeat Simple_repeat 1 30 0 729 297 20 0 chr1 84146329 84146531 -198047133 - MIR SINE MIR -7 255 50 716 301 23 19 chr1 84147387 84147646 -198046018 - MIR SINE MIR 0 262 3 936 246 145 50 chr1 84147800 84148263 -198045401 + MLT1L LTR MaLR 93 599 -16 7683 22 0 3 chr1 84148656 84149792 -198043872 - L1PA3 LINE L1 -1 6154 5020 1886 225 60 70 chr1 84149863 84150559 -198043105 - L1ME3 LINE L1 -6 6156 5472 25 31 0 0 chr1 84150648 84150680 -198042984 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 84152160 84152198 -198041466 + AT_rich Low_complexity Low_complexity 1 38 0 198 71 0 0 chr1 84153851 84153879 -198039785 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 780 292 54 59 chr1 84153879 84154270 -198039394 - LTR67 LTR ERVL -14 543 155 357 211 13 0 chr1 84154280 84154356 -198039308 + MER94 DNA DNA 24 100 -34 323 253 33 65 chr1 84154658 84154801 -198038863 + MER5A DNA MER1_type 7 155 -34 605 294 126 5 chr1 84156534 84156748 -198036916 - MIR SINE MIR -6 256 17 203 279 0 0 chr1 84157222 84157265 -198036399 + L2 LINE L2 3219 3261 -11 261 206 120 43 chr1 84157265 84157357 -198036307 + L1MC4 LINE L1 6605 6703 -1339 257 281 0 0 chr1 84157358 84157415 -198036249 + (TA)n Simple_repeat Simple_repeat 2 58 0 365 293 24 61 chr1 84158365 84158529 -198035135 - MIR SINE MIR -56 206 49 1804 159 0 20 chr1 84158991 84159293 -198034371 - MLT1B LTR MaLR 0 390 95 21 0 0 0 chr1 84159293 84159314 -198034350 + AT_rich Low_complexity Low_complexity 1 21 0 43517 41 9 0 chr1 84159314 84165408 -198028256 - L1PA4 LINE L1 -8 6147 2 510 156 0 98 chr1 84165409 84165531 -198028133 - MLT1B LTR MaLR -280 110 1 764 240 6 12 chr1 84165771 84165942 -198027722 - MER97c DNA MER1_type? -911 179 10 698 281 83 0 chr1 84166935 84167163 -198026501 + MIR SINE MIR 10 256 -6 2148 107 4 0 chr1 84167630 84167954 -198025710 + AluSg SINE Alu 1 325 0 1695 217 55 41 chr1 84168189 84168701 -198024963 - L1ME3A LINE L1 -7 6163 5645 387 286 95 37 chr1 84171240 84171429 -198022235 - MIR SINE MIR -58 204 5 320 298 158 0 chr1 84171449 84171607 -198022057 + MIR SINE MIR 65 247 -15 280 170 0 0 chr1 84172056 84172103 -198021561 - MLT1F1 LTR MaLR -520 47 1 627 366 27 61 chr1 84172103 84172691 -198020973 + L2 LINE L2 2287 2854 -460 436 229 10 0 chr1 84172740 84172836 -198020828 - MIR SINE MIR -4 258 162 207 336 86 26 chr1 84173162 84173278 -198020386 + L2 LINE L2 3182 3304 -9 204 338 101 14 chr1 84173494 84173633 -198020031 + L2 LINE L2 2915 3065 -207 565 257 165 68 chr1 84173802 84174141 -198019523 - L2 LINE L2 0 3313 2942 27 0 0 0 chr1 84176626 84176653 -198017011 + AT_rich Low_complexity Low_complexity 1 27 0 360 0 0 0 chr1 84176692 84176732 -198016932 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1254 203 0 31 chr1 84176735 84176996 -198016668 - AluJo SINE Alu -30 282 30 358 231 13 0 chr1 84177170 84177248 -198016416 + MLT1D LTR MaLR 1 79 -426 1780 210 83 25 chr1 84177261 84177733 -198015931 + MLT1D LTR MaLR 7 505 0 235 308 39 13 chr1 84177836 84177914 -198015750 - MIR SINE MIR -21 241 162 302 301 0 41 chr1 84177944 84178067 -198015597 + L2 LINE L2 2693 2810 -504 267 279 58 52 chr1 84178067 84178221 -198015443 - MER5A DNA MER1_type 0 189 35 * 523 283 20 20 chr1 84178094 84178246 -198015418 + MER5A DNA MER1_type 37 188 -1 430 338 46 0 chr1 84178269 84178420 -198015244 + L2 LINE L2 2825 2982 -331 460 264 131 21 chr1 84179132 84179492 -198014172 - MLT1J2 LTR MaLR -23 427 7 319 237 81 104 chr1 84179618 84179829 -198013835 + L2 LINE L2 3108 3313 0 28 29 0 0 chr1 84180943 84180978 -198012686 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 84181012 84181040 -198012624 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 84181841 84181862 -198011802 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 84182762 84182783 -198010881 + AT_rich Low_complexity Low_complexity 1 21 0 189 238 0 0 chr1 84184213 84184255 -198009409 - L2 LINE L2 -234 3038 2997 268 352 106 40 chr1 84184451 84184678 -198008986 - L2 LINE L2 -520 2794 2553 2039 171 25 25 chr1 84184701 84185099 -198008565 - LTR23 LTR ERV1 -39 398 1 198 343 42 42 chr1 84186187 84186330 -198007334 + L2 LINE L2 3166 3308 -5 1746 193 30 6 chr1 84186613 84186944 -198006720 + MER2 DNA MER2_type 6 344 -1 444 214 143 0 chr1 84187013 84187153 -198006511 - MIR SINE MIR -1 261 102 2976 166 54 66 chr1 84187934 84188633 -198005031 + LTR8 LTR ERV1 1 691 0 270 372 18 9 chr1 84189386 84189499 -198004165 - L2 LINE L2 -14 3258 3145 287 296 0 67 chr1 84189518 84189653 -198004011 - MER5A DNA MER1_type -28 161 36 390 226 168 32 chr1 84189681 84189836 -198003828 + MER5B DNA MER1_type 1 176 -2 202 261 34 0 chr1 84190262 84190350 -198003314 + (TA)n Simple_repeat Simple_repeat 1 91 0 503 234 24 0 chr1 84190739 84190863 -198002801 - MER105 DNA DNA -42 162 36 21 0 0 0 chr1 84190999 84191020 -198002644 + AT_rich Low_complexity Low_complexity 1 21 0 267 275 22 11 chr1 84191035 84191126 -198002538 - MLT1J1 LTR MaLR -3 443 352 423 0 0 0 chr1 84191317 84191364 -198002300 + (TA)n Simple_repeat Simple_repeat 1 47 0 401 157 24 24 chr1 84191492 84191575 -198002089 - MLT1J2 LTR MaLR -367 83 1 240 111 0 0 chr1 84192041 84192077 -198001587 + (CA)n Simple_repeat Simple_repeat 2 37 0 505 267 133 0 chr1 84193936 84194101 -197999563 + MIR SINE MIR 15 201 -61 241 290 0 43 chr1 84194964 84195033 -197998631 + MIR SINE MIR 99 164 -98 375 338 137 26 chr1 84196118 84196461 -197997203 + L2 LINE L2 2892 3272 0 276 307 94 42 chr1 84196487 84196699 -197996965 - MIR SINE MIR -10 252 30 833 251 29 26 chr1 84197830 84198102 -197995562 + L1ME1 LINE L1 5864 6295 -39 2618 116 6 0 chr1 84198617 84198979 -197994685 + THE1B LTR MaLR 1 364 0 484 266 246 5 chr1 84200393 84200600 -197993064 + MIR SINE MIR 3 259 -3 2062 132 0 0 chr1 84200719 84201007 -197992657 + AluSg SINE Alu 1 288 -22 25 0 0 0 chr1 84201452 84201477 -197992187 + AT_rich Low_complexity Low_complexity 1 25 0 253 384 40 0 chr1 84202334 84202459 -197991205 + L2 LINE L2 3137 3266 -6 783 327 48 66 chr1 84203266 84203876 -197989788 - L2 LINE L2 -5 3308 2707 285 258 91 0 chr1 84203900 84203966 -197989698 - L2 LINE L2 -55 3258 3187 868 308 155 14 chr1 84203999 84204632 -197989032 - L2 LINE L2 -652 2662 1941 1226 15 0 0 chr1 84204678 84204815 -197988849 - AluYa5/8 SINE Alu -4 306 170 255 266 0 25 chr1 84204840 84204919 -197988745 + Tigger5 DNA MER2_type 2238 2314 -9 219 296 88 0 chr1 84204927 84205052 -197988612 - L2 LINE L2 -1591 1723 1588 193 284 15 30 chr1 84205049 84205116 -197988548 + L2 LINE L2 3207 3272 0 * 184 294 39 0 chr1 84205132 84205183 -197988481 - MIR SINE MIR -134 74 22 1790 140 0 120 chr1 84206372 84206723 -197986941 - MER1B DNA MER1_type 0 339 31 230 190 38 89 chr1 84206781 84206860 -197986804 - MER116 DNA Mariner 0 80 6 27 0 0 0 chr1 84207099 84207126 -197986538 + AT_rich Low_complexity Low_complexity 1 27 0 2577 53 0 0 chr1 84207483 84207785 -197985879 + AluY SINE Alu 1 302 -9 281 269 105 29 chr1 84208208 84208379 -197985285 + Harlequin LTR ERV1 187 370 -6279 623 303 35 9 chr1 84208568 84208796 -197984868 + Harlequin LTR ERV1 784 1017 -6768 928 289 63 41 chr1 84209002 84209720 -197983944 + Harlequin LTR ERV1 972 2034 -4957 475 118 0 0 chr1 84209720 84209788 -197983876 + LTR18B LTR ERVL 335 402 -212 456 254 0 67 chr1 84209870 84210063 -197983601 + GA-rich Low_complexity Low_complexity 1 180 0 1905 324 48 58 chr1 84210110 84211597 -197982067 + Harlequin LTR ERV1 2851 5321 -2464 2138 92 23 13 chr1 84211597 84211900 -197981764 + AluSq SINE Alu 1 306 -7 1905 324 48 58 chr1 84211900 84212332 -197981332 + Harlequin LTR ERV1 5321 5756 -2029 628 289 52 71 chr1 84213073 84213634 -197980030 + Harlequin LTR ERV1 3386 3935 -2961 27 49 0 0 chr1 84214701 84214742 -197978922 + AT_rich Low_complexity Low_complexity 1 41 0 241 269 149 0 chr1 84215222 84215363 -197978301 - L1ME3A LINE L1 -165 6005 5844 604 186 26 0 chr1 84215371 84215484 -197978180 - MLT1E2 LTR MaLR -193 433 318 1212 87 87 27 chr1 84215485 84215669 -197977995 - MER30 DNA MER1_type -1 229 35 253 260 90 68 chr1 84215681 84215858 -197977806 - L1ME3A LINE L1 -361 5809 5629 1029 182 16 5 chr1 84217212 84217399 -197976265 - MER5A DNA MER1_type 0 189 1 318 324 124 76 chr1 84217633 84217988 -197975676 - L2 LINE L2 -1 3271 2900 2491 240 27 19 chr1 84218633 84218933 -197974731 - MLT1E2 LTR MaLR -1 625 329 1478 121 27 0 chr1 84218933 84219156 -197974508 - MER30 DNA MER1_type -1 229 1 2491 240 27 19 chr1 84219156 84219475 -197974189 - MLT1E2 LTR MaLR -297 329 1 549 283 28 11 chr1 84221799 84221976 -197971688 - MIR SINE MIR -46 216 37 2238 105 3 3 chr1 84222205 84222511 -197971153 - AluSx SINE Alu -2 310 5 24 32 0 0 chr1 84222570 84222601 -197971063 + AT_rich Low_complexity Low_complexity 1 31 0 326 315 19 68 chr1 84222975 84223137 -197970527 - MIR3 SINE MIR -39 169 16 1936 151 3 0 chr1 84225343 84225635 -197968029 - AluSx SINE Alu -19 293 1 206 280 173 0 chr1 84225860 84225935 -197967729 - L2 LINE L2 -2 3270 3183 22 35 0 0 chr1 84226022 84226051 -197967613 + AT_rich Low_complexity Low_complexity 1 29 0 1409 290 60 26 chr1 84227426 84228161 -197965503 + L2 LINE L2 2491 3242 -71 21 0 0 0 chr1 84228523 84228544 -197965120 + AT_rich Low_complexity Low_complexity 1 21 0 307 232 95 0 chr1 84229678 84229773 -197963891 + L2 LINE L2 2243 2346 -968 1049 285 97 7 chr1 84229930 84230354 -197963310 + LTR16B LTR ERVL 1 462 -2 267 79 0 0 chr1 84230393 84230431 -197963233 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr1 84231153 84231187 -197962477 + AT_rich Low_complexity Low_complexity 1 34 0 2196 102 3 3 chr1 84234055 84234350 -197959314 - AluSx SINE Alu -13 299 5 24 32 0 0 chr1 84234409 84234440 -197959224 + AT_rich Low_complexity Low_complexity 1 31 0 326 315 19 68 chr1 84234814 84234976 -197958688 - MIR3 SINE MIR -39 169 16 1936 151 3 0 chr1 84237187 84237479 -197956185 - AluSx SINE Alu -19 293 1 206 280 173 0 chr1 84237704 84237779 -197955885 - L2 LINE L2 -2 3270 3183 22 35 0 0 chr1 84237866 84237895 -197955769 + AT_rich Low_complexity Low_complexity 1 29 0 1409 290 60 26 chr1 84239270 84240005 -197953659 + L2 LINE L2 2491 3242 -71 21 0 0 0 chr1 84240368 84240389 -197953275 + AT_rich Low_complexity Low_complexity 1 21 0 307 232 95 0 chr1 84241523 84241618 -197952046 + L2 LINE L2 2243 2346 -968 1049 285 97 7 chr1 84241775 84242199 -197951465 + LTR16B LTR ERVL 1 462 -2 411 56 0 0 chr1 84242238 84242292 -197951372 + (TG)n Simple_repeat Simple_repeat 2 55 0 221 0 0 33 chr1 84242293 84242323 -197951341 + (GA)n Simple_repeat Simple_repeat 2 30 0 844 276 125 27 chr1 84242530 84242939 -197950725 + MLT1J LTR MaLR 27 475 -36 1165 218 118 57 chr1 84243575 84244015 -197949649 - MLT1C LTR MaLR 0 467 1 188 392 100 8 chr1 84244384 84244504 -197949160 - L2 LINE L2 0 3272 3142 22 0 0 0 chr1 84244811 84244833 -197948831 + AT_rich Low_complexity Low_complexity 1 22 0 1099 58 0 0 chr1 84245472 84245611 -197948053 + MER85 DNA T2_type 1 139 0 234 0 0 0 chr1 84246510 84246536 -197947128 + (TTA)n Simple_repeat Simple_repeat 2 27 0 333 281 33 25 chr1 84246970 84247091 -197946573 - MIR SINE MIR -57 151 30 285 284 213 35 chr1 84247993 84248162 -197945502 + MIR SINE MIR 8 206 -56 407 206 64 78 chr1 84248295 84248436 -197945228 + MIR SINE MIR 98 236 -26 272 364 47 0 chr1 84248622 84248751 -197944913 - L2 LINE L2 -785 2529 2395 291 266 162 12 chr1 84248803 84248976 -197944688 - L2 LINE L2 -1369 1945 1747 1945 151 7 7 chr1 84248977 84249276 -197944388 + AluSx SINE Alu 1 299 -13 27 29 0 0 chr1 84252145 84252179 -197941485 + AT_rich Low_complexity Low_complexity 1 34 0 1724 169 0 28 chr1 84253192 84253482 -197940182 + AluJo SINE Alu 1 282 -30 276 290 69 76 chr1 84255676 84255821 -197937843 - MIR3 SINE MIR -46 162 19 195 42 0 0 chr1 84256600 84256624 -197937040 + (TG)n Simple_repeat Simple_repeat 1 24 0 354 280 118 8 chr1 84257398 84257593 -197936071 + MIR SINE MIR 41 252 -10 267 313 12 0 chr1 84258963 84259043 -197934621 + L2 LINE L2 3179 3259 -13 28 0 0 0 chr1 84259556 84259584 -197934080 + AT_rich Low_complexity Low_complexity 1 28 0 999 135 45 6 chr1 84259818 84259996 -197933668 - L1MA9 LINE L1 0 6312 6128 180 0 0 0 chr1 84260596 84260616 -197933048 + (T)n Simple_repeat Simple_repeat 1 20 0 836 262 177 8 chr1 84261877 84262228 -197931436 - L2 LINE L2 -88 3225 2816 507 306 29 29 chr1 84262293 84262463 -197931201 - MER5B DNA MER1_type -1 177 8 318 281 35 70 chr1 84263092 84263206 -197930458 - MIR SINE MIR -76 132 23 235 333 95 14 chr1 84265464 84265611 -197928053 + L2 LINE L2 2471 2629 -685 2678 232 100 33 chr1 84265622 84267268 -197926396 - L1ME1 LINE L1 -5 6161 4382 14736 98 30 12 chr1 84267292 84269760 -197923904 + L1HS LINE L1 2729 5280 -875 9008 28 1 0 chr1 84269760 84270137 -197923527 - L1PA2 LINE L1 -2 6153 5778 2694 42 0 0 chr1 84270137 84270448 -197923216 - AluYa5 SINE Alu 0 311 1 9008 28 1 0 chr1 84270448 84271919 -197921745 - L1PA2 LINE L1 -377 5778 4313 14736 98 30 12 chr1 84271919 84272812 -197920852 + L1HS LINE L1 5280 6155 0 393 21 0 0 chr1 84272820 84272868 -197920796 - L1PA2 LINE L1 -1812 4334 4287 184 211 0 0 chr1 84275059 84275097 -197918567 + MIR3 SINE MIR 160 197 -11 485 220 23 38 chr1 84275231 84275363 -197918301 - L2 LINE L2 0 3313 3184 877 212 26 58 chr1 84275721 84275947 -197917717 + MER58A DNA MER1_type 5 223 -1 2004 131 136 16 chr1 84275993 84276375 -197917289 - MSTA LTR MaLR 0 428 1 711 258 47 4 chr1 84276635 84276868 -197916796 - Charlie2 DNA MER1_type -1 2861 2619 671 274 101 28 chr1 84276967 84277284 -197916380 + LTR16A LTR ERVL 111 450 0 * 2529 213 56 25 chr1 84277284 84278009 -197915655 - Charlie2 DNA MER1_type -239 2623 1876 376 275 28 50 chr1 84279722 84279904 -197913760 - MER5B DNA MER1_type 0 178 1 557 244 98 49 chr1 84280048 84280212 -197913452 + MER5A DNA MER1_type 18 189 0 220 257 29 0 chr1 84280278 84280348 -197913316 + CT-rich Low_complexity Low_complexity 2 73 0 226 219 0 0 chr1 84281032 84281073 -197912591 + (CA)n Simple_repeat Simple_repeat 1 41 0 224 298 19 58 chr1 84281292 84281396 -197912268 - MER5B DNA MER1_type -78 100 1 527 255 67 0 chr1 84281535 84281684 -197911980 - MIR SINE MIR -70 192 34 657 279 34 0 chr1 84281691 84281870 -197911794 - MER5A DNA MER1_type 0 189 5 566 196 163 0 chr1 84281927 84282080 -197911584 + MER5B DNA MER1_type 1 178 0 276 289 41 0 chr1 84282991 84283112 -197910552 - L1MEd LINE L1 -5075 1044 919 2033 155 0 7 chr1 84283130 84283440 -197910224 - AluSx SINE Alu -2 310 3 24 0 0 0 chr1 84284441 84284465 -197909199 + AT_rich Low_complexity Low_complexity 1 24 0 236 94 0 0 chr1 84284563 84284595 -197909069 - MLT1A1 LTR MaLR 0 374 343 3432 141 109 6 chr1 84284600 84285279 -197908385 - Tigger3(Golem) DNA MER2_type -3 3026 2278 685 198 8 0 chr1 84285257 84285378 -197908286 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 797 171 43 30 chr1 84285384 84285548 -197908116 - MLT1A1 LTR MaLR -38 327 162 14715 77 4 3 chr1 84285581 84290140 -197903524 - L1PA7 LINE L1 -8 6146 1524 542 279 138 25 chr1 84290293 84290702 -197902962 - L2 LINE L2 -196 3117 2661 1620 148 9 72 chr1 84291374 84291705 -197901959 + MER44D DNA MER2_type 29 608 -1 1191 181 5 0 chr1 84293979 84294189 -197899475 + L1PA16 LINE L1 5951 6161 -5 411 264 141 27 chr1 84294440 84294739 -197898925 + L1ME4a LINE L1 5560 5892 -229 272 245 104 9 chr1 84294768 84294874 -197898790 + L1ME4a LINE L1 5966 6081 -40 22 35 0 0 chr1 84294922 84294951 -197898713 + AT_rich Low_complexity Low_complexity 1 29 0 613 143 13 39 chr1 84296233 84296387 -197897277 + GA-rich Low_complexity Low_complexity 4 153 0 330 26 0 0 chr1 84296636 84296675 -197896989 + (CAT)n Simple_repeat Simple_repeat 1 39 0 342 335 88 22 chr1 84296727 84296909 -197896755 - MIR SINE MIR -54 208 15 24 32 0 0 chr1 84297782 84297813 -197895851 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr1 84297990 84298013 -197895651 + (T)n Simple_repeat Simple_repeat 1 23 0 1304 214 21 10 chr1 84298291 84298581 -197895083 - LTR40b LTR ERVL -2 460 168 700 262 58 13 chr1 84298718 84298943 -197894721 - MIR SINE MIR -15 247 13 30 45 0 0 chr1 84300022 84300066 -197893598 + AT_rich Low_complexity Low_complexity 1 44 0 1358 193 100 4 chr1 84300671 84300773 -197892891 + AluJb SINE Alu 1 92 -220 198 0 0 0 chr1 84300773 84300795 -197892869 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1358 193 100 4 chr1 84300795 84300972 -197892692 + AluJb SINE Alu 92 307 -5 21 0 0 0 chr1 84300977 84300998 -197892666 + AT_rich Low_complexity Low_complexity 1 21 0 223 176 0 59 chr1 84301078 84301129 -197892535 + GA-rich Low_complexity Low_complexity 1 48 0 23 54 0 0 chr1 84302908 84302945 -197890719 + AT_rich Low_complexity Low_complexity 1 37 0 286 292 17 8 chr1 84303300 84303420 -197890244 + L1ME4a LINE L1 5848 5968 -153 477 286 77 0 chr1 84303613 84303900 -197889764 + L1ME4a LINE L1 5586 5894 -227 21 36 0 0 chr1 84304052 84304080 -197889584 + AT_rich Low_complexity Low_complexity 1 28 0 2428 92 0 0 chr1 84304113 84304416 -197889248 + AluY SINE Alu 1 303 -8 337 277 0 40 chr1 84305060 84305161 -197888503 - MER58 DNA MER1_type -2323 97 1 736 244 21 67 chr1 84306079 84306317 -197887347 + MIR SINE MIR 32 258 -4 3435 133 4 20 chr1 84307293 84307829 -197885835 - MER1A DNA MER1_type 0 527 1 21 0 0 0 chr1 84308034 84308055 -197885609 + AT_rich Low_complexity Low_complexity 1 21 0 643 319 47 13 chr1 84308231 84308532 -197885132 - LTR16A1 LTR ERVL 0 457 147 419 264 61 27 chr1 84310425 84310573 -197883091 + MIR SINE MIR 40 192 -70 320 266 160 12 chr1 84310722 84310891 -197882773 - MIR SINE MIR -1 261 68 276 30 0 0 chr1 84311341 84311374 -197882290 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 246 0 0 chr1 84311559 84311616 -197882048 - L2 LINE L2 0 3313 3257 1658 147 4 0 chr1 84313405 84313677 -197879987 - L1MA6 LINE L1 -4 6296 6024 22 0 0 0 chr1 84314589 84314611 -197879053 + AT_rich Low_complexity Low_complexity 1 22 0 322 133 205 0 chr1 84314781 84314864 -197878800 + L1 LINE L1 4930 5029 -1117 295 200 0 0 chr1 84314858 84314923 -197878741 + L1P LINE L1 4600 4664 -1482 * 315 332 72 30 chr1 84315347 84315582 -197878082 + L1ME LINE L1 4958 5202 -944 404 335 54 19 chr1 84315649 84315944 -197877720 + L1ME LINE L1 5308 5610 -552 1530 112 48 0 chr1 84316399 84316648 -197877016 + L1PA13 LINE L1 5898 6158 -5 21 36 0 0 chr1 84318164 84318192 -197875472 + AT_rich Low_complexity Low_complexity 1 28 0 489 330 119 9 chr1 84318806 84319033 -197874631 + MIR SINE MIR 1 252 -10 477 279 144 50 chr1 84320343 84320544 -197873120 + MIR SINE MIR 9 228 -34 245 241 35 23 chr1 84320544 84320631 -197873033 - L1MCa LINE L1 -4333 2093 2006 14242 136 32 8 chr1 84320668 84323031 -197870633 - Tigger1 DNA MER2_type 0 2418 1 258 216 0 0 chr1 84323039 84323113 -197870551 + (TG)n Simple_repeat Simple_repeat 1 74 0 230 284 21 21 chr1 84323113 84323208 -197870456 + GA-rich Low_complexity Low_complexity 1 95 0 273 373 21 14 chr1 84324633 84324775 -197868889 - MARNA DNA Mariner -170 416 274 226 254 14 0 chr1 84324865 84324936 -197868728 + (TAA)n Simple_repeat Simple_repeat 1 72 0 923 0 18 0 chr1 84325085 84325197 -197868467 + L1HS LINE L1 6042 6155 0 9850 32 1 0 chr1 84325202 84326388 -197867276 - L1P LINE L1 -1812 4334 3148 7928 21 0 0 chr1 84326389 84327333 -197866331 + L1P LINE L1 2202 3145 -3001 6353 87 16 7 chr1 84327333 84328332 -197865332 + L1PA10 LINE L1 5148 6157 -11 600 245 93 40 chr1 84328336 84328502 -197865162 - L1M4 LINE L1 -1782 4364 4176 1003 118 0 12 chr1 84328502 84328671 -197864993 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 600 245 93 40 chr1 84328671 84328782 -197864882 - L1M4 LINE L1 -1970 4176 4072 449 354 35 25 chr1 84328792 84329077 -197864587 + L2 LINE L2 2569 2856 -458 191 258 106 0 chr1 84329119 84329185 -197864479 + MIR SINE MIR 120 192 -70 539 363 78 40 chr1 84329283 84329946 -197863718 + L2 LINE L2 2397 3081 -191 304 264 123 25 chr1 84330929 84331006 -197862658 + MIR SINE MIR 84 152 -110 4722 135 9 9 chr1 84331006 84331814 -197861850 - L1MA4 LINE L1 -9 6291 5484 304 264 123 25 chr1 84331814 84331899 -197861765 + MIR SINE MIR 152 262 0 329 300 45 101 chr1 84331922 84332279 -197861385 - L2 LINE L2 -23 3249 2913 2815 197 4 8 chr1 84332376 84332893 -197860771 - MLT2B2 LTR ERVL 0 515 1 321 320 138 42 chr1 84332914 84333270 -197860394 - L2 LINE L2 -559 2755 2366 300 320 19 19 chr1 84335107 84335210 -197858454 - MIR SINE MIR -152 110 8 240 427 14 14 chr1 84335222 84335365 -197858299 - MIR3 SINE MIR -62 146 4 194 296 57 23 chr1 84335563 84335651 -197858013 - L3 LINE CR1 -684 893 803 1912 104 62 0 chr1 84335691 84336000 -197857664 - L1PA16 LINE L1 -10 6156 5829 1005 129 7 0 chr1 84336000 84336155 -197857509 + L1PA16 LINE L1 5733 5888 -278 472 341 130 22 chr1 84336162 84336438 -197857226 - L2 LINE L2 -25 3247 2942 675 209 104 11 chr1 84336852 84336998 -197856666 - MER3 DNA MER1_type -4 205 37 2054 75 34 0 chr1 84336998 84337263 -197856401 - AluY SINE Alu -16 295 22 675 209 104 11 chr1 84337263 84337298 -197856366 - MER3 DNA MER1_type -172 37 7 23 33 0 0 chr1 84337380 84337410 -197856254 + AT_rich Low_complexity Low_complexity 1 30 0 2143 113 3 3 chr1 84338117 84338418 -197855246 + AluY SINE Alu 1 301 -10 283 282 109 11 chr1 84338566 84338740 -197854924 + L1ME LINE L1 5474 5664 -457 248 343 71 0 chr1 84339497 84339596 -197854068 + MIR SINE MIR 146 251 -11 29 47 0 0 chr1 84339815 84339858 -197853806 + AT_rich Low_complexity Low_complexity 1 43 0 196 146 182 18 chr1 84340873 84340928 -197852736 + MIR SINE MIR 27 90 -118 422 254 127 42 chr1 84341691 84341833 -197851831 + L2 LINE L2 3160 3313 0 2938 117 254 6 chr1 84342023 84343166 -197850498 + pTR5 LTR ERV1 741 2468 0 226 285 146 97 chr1 84343720 84344008 -197849656 - L2 LINE L2 0 3313 3012 507 293 31 31 chr1 84344651 84344831 -197848833 + MER5A DNA MER1_type 1 172 -6 23 0 0 0 chr1 84345867 84345890 -197847774 + AT_rich Low_complexity Low_complexity 1 23 0 181 370 0 0 chr1 84349599 84349645 -197844019 + L2 LINE L2 3154 3199 -73 551 305 23 42 chr1 84350032 84350291 -197843373 - MIR SINE MIR 0 262 9 22 0 0 0 chr1 84350294 84350316 -197843348 + AT_rich Low_complexity Low_complexity 1 22 0 188 321 0 0 chr1 84350604 84350657 -197843007 + MIR SINE MIR 54 106 -102 360 0 0 0 chr1 84352038 84352078 -197841586 + (CA)n Simple_repeat Simple_repeat 1 40 0 183 351 45 18 chr1 84353196 84353307 -197840357 + L2 LINE L2 2373 2486 -828 296 311 91 15 chr1 84353365 84353497 -197840167 + L2 LINE L2 3123 3264 -8 26 50 0 0 chr1 84354069 84354109 -197839555 + AT_rich Low_complexity Low_complexity 1 40 0 192 294 170 39 chr1 84354173 84354326 -197839338 + MIR SINE MIR 90 262 0 562 287 7 0 chr1 84355496 84355646 -197838018 - MER103 DNA DNA -5 161 11 23 33 0 0 chr1 84356276 84356306 -197837358 + AT_rich Low_complexity Low_complexity 1 30 0 596 246 68 16 chr1 84356363 84356535 -197837129 - MIR SINE MIR -23 185 2 262 278 135 23 chr1 84356753 84356886 -197836778 - MIR SINE MIR -111 151 4 312 352 63 7 chr1 84360855 84360997 -197832667 + MIR SINE MIR 44 193 -69 807 325 77 15 chr1 84361239 84361890 -197831774 - L2 LINE L2 -2 3311 2576 1317 236 107 25 chr1 84362243 84362404 -197831260 - L1ME LINE L1 -5576 494 348 1746 212 144 60 chr1 84362404 84363007 -197830657 + MLT1E1 LTR MaLR 1 654 0 1317 236 107 25 chr1 84363007 84363117 -197830547 - L1ME LINE L1 -5722 348 248 288 0 0 0 chr1 84363117 84363149 -197830515 + (GA)n Simple_repeat Simple_repeat 2 33 0 1317 236 107 25 chr1 84363149 84363316 -197830348 - L1ME LINE L1 -5822 248 19 2977 250 161 75 chr1 84363430 84365274 -197828390 - L2 LINE L2 -865 2449 360 234 0 0 0 chr1 84366966 84366992 -197826672 + (A)n Simple_repeat Simple_repeat 1 26 0 857 325 150 36 chr1 84367533 84368131 -197825533 + L3 LINE CR1 562 1245 -332 2166 86 0 68 chr1 84368131 84368455 -197825209 - AluSc SINE Alu -7 302 1 857 325 150 36 chr1 84368455 84368524 -197825140 + L3 LINE CR1 1245 1305 -272 893 168 18 0 chr1 84369546 84369713 -197823951 + L1MB5 LINE L1 5607 5776 -398 1154 225 56 42 chr1 84369713 84370068 -197823596 - MLT1A2 LTR MaLR -14 360 1 948 222 36 5 chr1 84370068 84370289 -197823375 + L1MB5 LINE L1 5939 6166 -8 296 305 55 23 chr1 84370748 84370876 -197822788 - MLT1H LTR MaLR -379 170 39 234 240 0 0 chr1 84371076 84371126 -197822538 + (CA)n Simple_repeat Simple_repeat 2 51 0 446 258 152 7 chr1 84371569 84371720 -197821944 + MIR SINE MIR 11 183 -79 259 316 41 41 chr1 84372256 84372354 -197821310 + L2 LINE L2 3215 3312 -1 558 213 156 31 chr1 84372480 84372640 -197821024 - MIR SINE MIR -36 226 47 924 158 67 0 chr1 84372921 84373085 -197820579 + MER5B DNA MER1_type 1 175 -3 24 32 0 0 chr1 84373522 84373553 -197820111 + AT_rich Low_complexity Low_complexity 1 31 0 362 176 12 0 chr1 84374463 84374548 -197819116 + (CA)n Simple_repeat Simple_repeat 1 86 0 318 316 59 6 chr1 84374864 84374898 -197818766 + MER20B DNA MER1_type 26 57 -162 207 0 0 0 chr1 84374898 84374921 -197818743 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 318 316 59 6 chr1 84374921 84375047 -197818617 + MER20B DNA MER1_type 57 198 -21 28 0 0 0 chr1 84375443 84375471 -197818193 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr1 84375761 84375790 -197817874 + AT_rich Low_complexity Low_complexity 1 29 0 1109 165 80 25 chr1 84376144 84376344 -197817320 - AluJb SINE Alu -101 211 1 1192 149 14 5 chr1 84376349 84376557 -197817107 + Tigger7 DNA MER2_type 2272 2481 -6 515 288 30 1 chr1 84376566 84376772 -197816892 - L1M4 LINE L1 -1493 4653 4442 34 24 0 0 chr1 84376957 84376998 -197816666 + AT_rich Low_complexity Low_complexity 1 41 0 2376 25 0 11 chr1 84377269 84377573 -197816091 + AluYa5 SINE Alu 37 337 0 854 287 26 48 chr1 84377617 84378239 -197815425 - L1MEd LINE L1 -4751 1559 906 308 43 22 0 chr1 84378375 84378421 -197815243 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2006 112 0 7 chr1 84378424 84378700 -197814964 - AluSg SINE Alu -36 274 1 278 321 76 15 chr1 84378889 84379020 -197814644 - L1MEd LINE L1 -5735 384 246 434 339 17 6 chr1 84379048 84379225 -197814439 + L2 LINE L2 3122 3300 -13 32 0 0 0 chr1 84380198 84380230 -197813434 + AT_rich Low_complexity Low_complexity 1 32 0 541 284 14 21 chr1 84383200 84383341 -197810323 - MIR SINE MIR -121 141 2 318 301 97 0 chr1 84383364 84383477 -197810187 + MIR3 SINE MIR 65 188 -20 * 459 226 0 0 chr1 84383465 84383558 -197810106 + MER5A DNA MER1_type 10 102 -87 348 287 74 0 chr1 84384344 84384452 -197809212 + L2 LINE L2 3157 3272 0 256 268 98 0 chr1 84384771 84384853 -197808811 - L2 LINE L2 -5 3267 3178 999 33 0 0 chr1 84385043 84385164 -197808500 + L1PA5 LINE L1 6026 6146 -8 462 322 158 5 chr1 84385191 84385393 -197808271 - MIR SINE MIR -5 257 25 310 310 212 0 chr1 84385639 84385823 -197807841 + MIR SINE MIR 3 225 -37 1540 173 99 3 chr1 84386630 84386914 -197806750 - AluJb SINE Alu -1 311 1 2397 75 0 7 chr1 84387106 84387414 -197806250 + AluY SINE Alu 1 306 -5 2262 99 0 20 chr1 84387772 84388075 -197805589 - AluSq SINE Alu -16 297 1 1708 124 0 20 chr1 84388077 84388326 -197805338 - AluSp SINE Alu -16 297 54 463 363 133 22 chr1 84388439 84388839 -197804825 - L2 LINE L2 -4 3268 2825 238 338 0 14 chr1 84389555 84389629 -197804035 + L2 LINE L2 3240 3312 -1 385 267 220 16 chr1 84391387 84391578 -197802086 - MIR SINE MIR -13 249 20 1955 193 58 24 chr1 84391656 84392108 -197801556 + MLT1C LTR MaLR 1 467 0 243 296 185 32 chr1 84394429 84394645 -197799019 - MIR SINE MIR 0 262 14 891 193 50 6 chr1 84394650 84394831 -197798833 - MER5A DNA MER1_type 0 189 1 215 184 61 0 chr1 84395714 84395763 -197797901 + T-rich Low_complexity Low_complexity 2 53 0 6195 6 0 0 chr1 84395763 84396453 -197797211 - L1HS LINE L1 0 6155 5466 1399 114 5 0 chr1 84396888 84397098 -197796566 - L1PB1 LINE L1 -1 6150 5940 966 262 19 19 chr1 84398052 84398308 -197795356 + MIR SINE MIR 4 259 -3 237 196 0 0 chr1 84398380 84398431 -197795233 + (TA)n Simple_repeat Simple_repeat 2 52 0 249 340 130 10 chr1 84398477 84398577 -197795087 - L2 LINE L2 -1 3271 3160 192 179 0 0 chr1 84398637 84398676 -197794988 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 228 67 0 0 chr1 84399534 84399564 -197794100 + (GA)n Simple_repeat Simple_repeat 1 30 0 389 277 81 37 chr1 84399923 84400113 -197793551 + MIR SINE MIR 9 206 -56 185 243 0 122 chr1 84400517 84400591 -197793073 + L2 LINE L2 3238 3302 -11 1501 83 10 0 chr1 84400658 84400863 -197792801 - L1PA7 LINE L1 0 6154 5948 380 237 153 34 chr1 84401496 84401614 -197792050 - L2 LINE L2 0 3313 3182 418 275 53 12 chr1 84401663 84401834 -197791830 - L2 LINE L2 -483 2831 2654 771 290 12 24 chr1 84402120 84402368 -197791296 - MIR SINE MIR -16 246 2 608 301 81 24 chr1 84403285 84403531 -197790133 + MIR SINE MIR 3 262 0 1260 185 32 0 chr1 84403706 84403922 -197789742 + MER58A DNA MER1_type 2 224 0 448 346 70 21 chr1 84404353 84404639 -197789025 - L2 LINE L2 -339 2975 2676 2219 230 114 18 chr1 84405408 84406605 -197787059 + L1MC4 LINE L1 6446 7910 -132 825 221 0 0 chr1 84406849 84407007 -197786657 - AluJb SINE Alu -14 298 141 258 339 0 0 chr1 84407040 84407105 -197786559 + L2 LINE L2 3168 3232 -40 330 225 146 0 chr1 84407212 84407301 -197786363 + MIR SINE MIR 43 144 -118 417 323 31 8 chr1 84407425 84407555 -197786109 + MIR3 SINE MIR 30 162 -46 1728 43 0 0 chr1 84409360 84409568 -197784096 - L1PA3 LINE L1 -3 6152 5945 5687 23 6 0 chr1 84409568 84410756 -197782908 + L1PA3 LINE L1 4762 5953 -202 401 324 19 21 chr1 84410769 84410972 -197782692 + MIR3 SINE MIR 2 197 -65 1694 167 21 3 chr1 84412088 84412375 -197781289 + AluSg SINE Alu 12 303 -7 390 268 45 71 chr1 84412375 84412573 -197781091 - L3 LINE CR1 -7 1570 1378 475 366 50 43 chr1 84412681 84413102 -197780562 - L3 LINE CR1 -1034 543 120 26 82 0 0 chr1 84413303 84413364 -197780300 + AT_rich Low_complexity Low_complexity 1 61 0 26 0 0 0 chr1 84414435 84414461 -197779203 + AT_rich Low_complexity Low_complexity 1 26 0 225 333 70 31 chr1 84414482 84414611 -197779053 - L2 LINE L2 -36 3236 3103 879 276 50 4 chr1 84414729 84414968 -197778696 - MIR SINE MIR -11 251 2 1230 302 73 63 chr1 84415286 84416218 -197777446 - L2 LINE L2 -9 3304 2355 277 336 71 21 chr1 84416487 84416627 -197777037 + MIR SINE MIR 11 157 -105 24 32 0 0 chr1 84416693 84416724 -197776940 + AT_rich Low_complexity Low_complexity 1 31 0 340 259 42 87 chr1 84416811 84416940 -197776724 - MIR3 SINE MIR -40 168 44 22 56 0 0 chr1 84417309 84417345 -197776319 + AT_rich Low_complexity Low_complexity 1 36 0 333 247 0 0 chr1 84417380 84417461 -197776203 + (TG)n Simple_repeat Simple_repeat 2 82 0 22 0 0 0 chr1 84417482 84417504 -197776160 + AT_rich Low_complexity Low_complexity 1 22 0 2260 108 7 3 chr1 84419915 84420252 -197773412 - AluSc SINE Alu 0 340 3 627 310 118 4 chr1 84420282 84420511 -197773153 - MIR SINE MIR -4 258 4 24 32 0 0 chr1 84421089 84421120 -197772544 + AT_rich Low_complexity Low_complexity 1 31 0 610 134 126 17 chr1 84421817 84421936 -197771728 - MER20 DNA MER1_type 0 219 88 2016 175 123 19 chr1 84421936 84422400 -197771264 + MLT2B1 LTR ERVL 1 512 -8 456 200 0 0 chr1 84422408 84422493 -197771171 - MER20 DNA MER1_type -133 86 2 189 121 0 0 chr1 84424031 84424064 -197769600 + (TC)n Simple_repeat Simple_repeat 2 34 0 463 231 19 90 chr1 84424156 84424259 -197769405 + MIR SINE MIR 60 151 -111 1496 174 74 22 chr1 84424259 84424556 -197769108 + AluJb SINE Alu 1 311 0 463 231 19 90 chr1 84424556 84424607 -197769057 + MIR SINE MIR 151 204 -58 2021 153 0 0 chr1 84424633 84424934 -197768730 - AluJb SINE Alu -11 301 1 270 0 0 0 chr1 84425356 84425386 -197768278 + (TTA)n Simple_repeat Simple_repeat 2 31 0 896 213 11 0 chr1 84426904 84427078 -197766586 - MER5A DNA MER1_type -1 188 13 781 259 71 25 chr1 84427089 84427328 -197766336 + MIR SINE MIR 9 258 -4 195 215 0 0 chr1 84428147 84428212 -197765452 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 2131 110 0 22 chr1 84429012 84429329 -197764335 + AluSx SINE Alu 3 312 0 24 32 0 0 chr1 84429558 84429589 -197764075 + AT_rich Low_complexity Low_complexity 1 31 0 558 232 56 8 chr1 84430478 84430603 -197763061 - FLAM_A SINE Alu -2 131 1 23 0 0 0 chr1 84430627 84430650 -197763014 + AT_rich Low_complexity Low_complexity 1 23 0 1694 167 21 3 chr1 84481501 84481788 -197711876 + AluSg SINE Alu 12 303 -7 390 268 45 71 chr1 84481788 84481986 -197711678 - L3 LINE CR1 -7 1570 1378 475 366 50 43 chr1 84482094 84482515 -197711149 - L3 LINE CR1 -1034 543 120 26 82 0 0 chr1 84482716 84482777 -197710887 + AT_rich Low_complexity Low_complexity 1 61 0 26 0 0 0 chr1 84483848 84483874 -197709790 + AT_rich Low_complexity Low_complexity 1 26 0 225 333 70 31 chr1 84483895 84484024 -197709640 - L2 LINE L2 -36 3236 3103 879 276 50 4 chr1 84484142 84484381 -197709283 - MIR SINE MIR -11 251 2 1230 302 73 63 chr1 84484699 84485631 -197708033 - L2 LINE L2 -9 3304 2355 277 336 71 21 chr1 84485900 84486040 -197707624 + MIR SINE MIR 11 157 -105 24 32 0 0 chr1 84486106 84486137 -197707527 + AT_rich Low_complexity Low_complexity 1 31 0 340 259 42 87 chr1 84486224 84486353 -197707311 - MIR3 SINE MIR -40 168 44 22 56 0 0 chr1 84486722 84486758 -197706906 + AT_rich Low_complexity Low_complexity 1 36 0 333 247 0 0 chr1 84486793 84486874 -197706790 + (TG)n Simple_repeat Simple_repeat 2 82 0 22 0 0 0 chr1 84486895 84486917 -197706747 + AT_rich Low_complexity Low_complexity 1 22 0 2286 102 7 3 chr1 84489328 84489665 -197703999 - AluSc SINE Alu 0 340 3 627 310 118 4 chr1 84489695 84489924 -197703740 - MIR SINE MIR -4 258 4 24 32 0 0 chr1 84490502 84490533 -197703131 + AT_rich Low_complexity Low_complexity 1 31 0 610 134 126 17 chr1 84491230 84491349 -197702315 - MER20 DNA MER1_type 0 219 88 2016 175 123 19 chr1 84491349 84491813 -197701851 + MLT2B1 LTR ERVL 1 512 -8 456 200 0 0 chr1 84491821 84491906 -197701758 - MER20 DNA MER1_type -133 86 2 189 121 0 0 chr1 84493444 84493477 -197700187 + (TC)n Simple_repeat Simple_repeat 2 34 0 463 231 19 90 chr1 84493569 84493672 -197699992 + MIR SINE MIR 60 151 -111 1496 174 74 22 chr1 84493672 84493969 -197699695 + AluJb SINE Alu 1 311 0 463 231 19 90 chr1 84493969 84494020 -197699644 + MIR SINE MIR 151 204 -58 2021 153 0 0 chr1 84494046 84494347 -197699317 - AluJb SINE Alu -11 301 1 270 0 0 0 chr1 84494769 84494799 -197698865 + (TTA)n Simple_repeat Simple_repeat 2 31 0 896 213 11 0 chr1 84496317 84496491 -197697173 - MER5A DNA MER1_type -1 188 13 781 259 71 25 chr1 84496502 84496741 -197696923 + MIR SINE MIR 9 258 -4 195 215 0 0 chr1 84497560 84497625 -197696039 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 2131 110 0 22 chr1 84498425 84498742 -197694922 + AluSx SINE Alu 3 312 0 24 32 0 0 chr1 84498971 84499002 -197694662 + AT_rich Low_complexity Low_complexity 1 31 0 558 232 56 8 chr1 84499891 84500016 -197693648 - FLAM_A SINE Alu -2 131 1 409 244 58 13 chr1 84500027 84500183 -197693481 - L1MD2 LINE L1 -1 6358 6196 529 200 0 0 chr1 84500184 84500279 -197693385 + MLT1A1 LTR MaLR 2 96 -269 14727 77 2 2 chr1 84500313 84504871 -197688793 + L1PA7 LINE L1 1524 6146 -8 797 171 43 30 chr1 84504904 84505068 -197688596 + MLT1A1 LTR MaLR 162 327 -38 685 198 8 0 chr1 84505074 84505195 -197688469 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 3432 141 109 6 chr1 84505173 84505852 -197687812 + Tigger3(Golem) DNA MER2_type 2278 3026 -3 236 94 0 0 chr1 84505857 84505889 -197687775 + MLT1A1 LTR MaLR 334 365 0 24 0 0 0 chr1 84505987 84506011 -197687653 + AT_rich Low_complexity Low_complexity 1 24 0 2199 126 0 7 chr1 84507012 84507322 -197686342 + AluSx SINE Alu 3 310 -2 276 289 41 0 chr1 84507340 84507461 -197686203 + L1MEd LINE L1 919 1044 -5075 566 196 163 0 chr1 84508372 84508525 -197685139 - MER5B DNA MER1_type 0 178 1 657 279 34 0 chr1 84508582 84508761 -197684903 + MER5A DNA MER1_type 5 189 0 527 255 67 0 chr1 84508768 84508917 -197684747 + MIR SINE MIR 34 192 -70 224 298 19 58 chr1 84509056 84509160 -197684504 + MER5B DNA MER1_type 1 100 -78 226 219 0 0 chr1 84509379 84509420 -197684244 + (TG)n Simple_repeat Simple_repeat 1 41 0 259 294 77 63 chr1 84509739 84509882 -197683782 + MIR3 SINE MIR 53 197 -11 485 220 23 38 chr1 84510016 84510148 -197683516 - L2 LINE L2 0 3313 3184 892 214 26 57 chr1 84510503 84510732 -197682932 + MER58A DNA MER1_type 2 223 -1 2004 131 136 16 chr1 84510778 84511160 -197682504 - MSTA LTR MaLR 0 428 1 711 258 47 4 chr1 84511420 84511653 -197682011 - Charlie2 DNA MER1_type -1 2861 2619 671 274 101 28 chr1 84511752 84512069 -197681595 + LTR16A LTR ERVL 111 450 0 * 2529 213 56 25 chr1 84512069 84512794 -197680870 - Charlie2 DNA MER1_type -239 2623 1876 370 283 212 21 chr1 84512800 84513083 -197680581 - Charlie2 DNA MER1_type -2525 337 1 23 54 0 0 chr1 84513144 84513181 -197680483 + AT_rich Low_complexity Low_complexity 1 37 0 213 286 0 57 chr1 84514145 84514215 -197679449 + MIR SINE MIR 91 156 -106 220 257 29 0 chr1 84514990 84515060 -197678604 + GA-rich Low_complexity Low_complexity 2 73 0 557 244 98 49 chr1 84515126 84515290 -197678374 - MER5A DNA MER1_type 0 189 18 376 275 28 50 chr1 84515434 84515616 -197678048 + MER5B DNA MER1_type 1 178 0 223 176 0 59 chr1 84520123 84520174 -197673490 + CT-rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr1 84520254 84520275 -197673389 + AT_rich Low_complexity Low_complexity 1 21 0 1370 189 100 4 chr1 84520280 84520457 -197673207 - AluJb SINE Alu -5 307 92 198 0 0 0 chr1 84520457 84520479 -197673185 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1370 189 100 4 chr1 84520479 84520581 -197673083 - AluJb SINE Alu -220 92 1 30 45 0 0 chr1 84521186 84521230 -197672434 + AT_rich Low_complexity Low_complexity 1 44 0 700 262 58 13 chr1 84522309 84522534 -197671130 + MIR SINE MIR 13 247 -15 1304 214 21 10 chr1 84522671 84522961 -197670703 + LTR40b LTR ERVL 168 460 -2 186 43 0 0 chr1 84523239 84523262 -197670402 + (A)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr1 84523439 84523470 -197670194 + AT_rich Low_complexity Low_complexity 1 31 0 342 335 88 22 chr1 84524343 84524525 -197669139 + MIR SINE MIR 15 208 -54 330 26 0 0 chr1 84524577 84524616 -197669048 + (ATG)n Simple_repeat Simple_repeat 1 39 0 613 143 13 39 chr1 84524865 84525019 -197668645 + CT-rich Low_complexity Low_complexity 4 153 0 22 35 0 0 chr1 84526301 84526330 -197667334 + AT_rich Low_complexity Low_complexity 1 29 0 272 245 104 9 chr1 84526378 84526484 -197667180 - L1ME4a LINE L1 -40 6081 5966 411 264 141 27 chr1 84526513 84526812 -197666852 - L1ME4a LINE L1 -229 5892 5560 1191 181 5 0 chr1 84527063 84527273 -197666391 - L1PA16 LINE L1 -5 6161 5951 1616 147 9 72 chr1 84529547 84529880 -197663784 - MER44D DNA MER2_type -1 608 28 835 287 136 21 chr1 84530550 84531126 -197662538 + L2 LINE L2 2661 3308 -5 23 54 0 0 chr1 84532138 84532175 -197661489 + AT_rich Low_complexity Low_complexity 1 37 0 286 292 17 8 chr1 84532530 84532650 -197661014 + L1ME4a LINE L1 5848 5968 -153 477 286 77 0 chr1 84532842 84533129 -197660535 + L1ME4a LINE L1 5586 5894 -227 21 36 0 0 chr1 84533281 84533309 -197660355 + AT_rich Low_complexity Low_complexity 1 28 0 2428 92 0 0 chr1 84533342 84533645 -197660019 + AluY SINE Alu 1 303 -8 337 277 0 40 chr1 84534289 84534390 -197659274 - MER58 DNA MER1_type -244 97 1 736 244 21 67 chr1 84535308 84535546 -197658118 + MIR SINE MIR 32 258 -4 3435 133 4 20 chr1 84536522 84537058 -197656606 - MER1A DNA MER1_type 0 527 1 21 0 0 0 chr1 84537263 84537284 -197656380 + AT_rich Low_complexity Low_complexity 1 21 0 643 319 47 13 chr1 84537460 84537761 -197655903 - LTR16A1 LTR ERVL 0 457 147 419 264 61 27 chr1 84539654 84539802 -197653862 + MIR SINE MIR 40 192 -70 320 266 160 12 chr1 84539951 84540120 -197653544 - MIR SINE MIR -1 261 68 276 30 0 0 chr1 84540570 84540603 -197653061 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 246 0 0 chr1 84540788 84540845 -197652819 - L2 LINE L2 0 3313 3257 1658 147 4 0 chr1 84542634 84542906 -197650758 - L1MA6 LINE L1 -4 6296 6024 22 0 0 0 chr1 84543818 84543840 -197649824 + AT_rich Low_complexity Low_complexity 1 22 0 332 143 191 0 chr1 84544010 84544094 -197649570 + L1 LINE L1 4930 5029 -1117 295 200 0 0 chr1 84544088 84544153 -197649511 + L1P LINE L1 4600 4664 -1482 * 315 332 72 30 chr1 84544577 84544812 -197648852 + L1ME LINE L1 4958 5202 -944 404 335 54 19 chr1 84544879 84545174 -197648490 + L1ME LINE L1 5308 5610 -552 1530 112 48 0 chr1 84545629 84545878 -197647786 + L1PA13 LINE L1 5898 6158 -5 21 36 0 0 chr1 84547394 84547422 -197646242 + AT_rich Low_complexity Low_complexity 1 28 0 489 330 119 9 chr1 84548036 84548263 -197645401 + MIR SINE MIR 1 252 -10 477 279 144 50 chr1 84549574 84549775 -197643889 + MIR SINE MIR 9 228 -34 245 241 35 23 chr1 84549775 84549862 -197643802 - L1MCa LINE L1 -4333 2093 2006 14151 134 32 7 chr1 84549899 84552261 -197641403 - Tigger1 DNA MER2_type 0 2418 1 258 216 0 0 chr1 84552269 84552343 -197641321 + (TG)n Simple_repeat Simple_repeat 1 74 0 230 284 21 21 chr1 84552343 84552438 -197641226 + GA-rich Low_complexity Low_complexity 1 95 0 273 373 21 14 chr1 84553861 84554003 -197639661 - MARNA DNA Mariner -170 416 274 226 254 14 0 chr1 84554093 84554164 -197639500 + (TAA)n Simple_repeat Simple_repeat 1 72 0 529 309 43 24 chr1 84554166 84554376 -197639288 - MIR SINE MIR -15 247 34 28 0 0 0 chr1 84555655 84555683 -197637981 + AT_rich Low_complexity Low_complexity 1 28 0 3846 292 120 19 chr1 84556451 84558305 -197635359 + L2 LINE L2 1237 3269 -44 1354 132 45 9 chr1 84559206 84559426 -197634238 + MER30 DNA MER1_type 1 228 -2 493 323 127 4 chr1 84559544 84559773 -197633891 - MIR SINE MIR 0 262 6 1065 188 22 6 chr1 84560296 84560477 -197633187 - MER5A DNA MER1_type 0 189 6 189 0 0 0 chr1 84560661 84560682 -197632982 + (A)n Simple_repeat Simple_repeat 1 21 0 2384 57 0 10 chr1 84560685 84560985 -197632679 + AluY SINE Alu 1 297 -14 234 250 0 0 chr1 84561947 84562011 -197631653 + L1M4 LINE L1 418 481 -6374 1989 128 21 0 chr1 84562299 84562457 -197631207 - AluSx SINE Alu -18 294 126 183 80 0 0 chr1 84562457 84562482 -197631182 + (TA)n Simple_repeat Simple_repeat 1 25 0 1989 128 21 0 chr1 84562482 84562611 -197631053 - AluSx SINE Alu -186 126 1 1013 187 84 36 chr1 84562904 84563155 -197630509 + MLT1C LTR MaLR 8 270 -197 263 250 12 81 chr1 84563471 84563643 -197630021 + L1M4 LINE L1 1278 1437 -5422 * 1343 251 84 31 chr1 84563639 84564152 -197629512 + L1ME1 LINE L1 5622 6161 -5 1316 175 138 15 chr1 84564206 84564474 -197629190 + AluJo SINE Alu 1 301 -1 219 319 33 33 chr1 84564578 84564669 -197628995 - L2 LINE L2 -249 3023 2933 253 295 98 36 chr1 84565873 84565985 -197627679 + MIR3 SINE MIR 38 156 -52 23 0 0 0 chr1 84567940 84567963 -197625701 + AT_rich Low_complexity Low_complexity 1 23 0 223 283 0 17 chr1 84568072 84568132 -197625532 + GA-rich Low_complexity Low_complexity 2 60 0 365 248 45 38 chr1 84569799 84569932 -197623732 + MER94 DNA DNA 1 134 0 314 336 45 45 chr1 84569934 84570157 -197623507 + L2 LINE L2 2630 2852 -462 528 274 0 8 chr1 84570926 84571050 -197622614 + MER74A LTR ERVL 324 446 -112 1204 192 140 28 chr1 84571071 84571321 -197622343 - AluJo SINE Alu -31 281 4 299 213 88 0 chr1 84571325 84571405 -197622259 + MLT2B2 LTR ERVL 1 87 -428 715 165 0 16 chr1 84571414 84571535 -197622129 + MER74A LTR ERVL 440 558 0 370 324 23 120 chr1 84571733 84571992 -197621672 + L2 LINE L2 2989 3222 -50 1087 201 71 19 chr1 84572177 84572485 -197621179 + MER33 DNA MER1_type 1 324 0 275 263 32 51 chr1 84573712 84573929 -197619735 + L1M4 LINE L1 2922 3134 -4004 213 213 0 0 chr1 84573929 84573976 -197619688 + (TA)n Simple_repeat Simple_repeat 1 47 0 4054 130 53 5 chr1 84573976 84574636 -197619028 + Tigger2 DNA MER2_type 1 692 -2026 1484 165 28 0 chr1 84574727 84574976 -197618688 + Tigger2 DNA MER2_type 2462 2717 -1 201 39 0 0 chr1 84574989 84575015 -197618649 + (CA)n Simple_repeat Simple_repeat 2 27 0 397 312 149 18 chr1 84575031 84575313 -197618351 + L1M4 LINE L1 3150 3468 -3489 242 275 0 0 chr1 84575343 84575412 -197618252 + L1M4 LINE L1 3521 3589 -3368 858 207 21 29 chr1 84575417 84575659 -197618005 + HAL1 LINE L1 1015 1254 -1253 281 306 141 37 chr1 84576576 84576818 -197616846 + MLT1I LTR MaLR 1 267 -142 237 324 46 0 chr1 84578699 84578807 -197614857 + L1MC/D LINE L1 5546 5658 -2150 219 216 0 0 chr1 84578824 84578879 -197614785 + (CA)n Simple_repeat Simple_repeat 1 55 0 25 75 0 0 chr1 84579342 84579395 -197614269 + AT_rich Low_complexity Low_complexity 1 53 0 26 50 0 0 chr1 84579677 84579717 -197613947 + AT_rich Low_complexity Low_complexity 1 40 0 408 317 142 9 chr1 84579849 84580180 -197613484 - L1MC4a LINE L1 -1911 5897 5523 255 303 212 0 chr1 84580541 84580640 -197613024 + L2 LINE L2 3189 3308 -5 21 0 0 0 chr1 84581672 84581693 -197611971 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 84582536 84582568 -197611096 + AT_rich Low_complexity Low_complexity 1 32 0 1061 280 125 19 chr1 84583348 84583819 -197609845 + LTR33 LTR ERVL 1 521 0 1677 174 35 3 chr1 84583933 84584220 -197609444 + AluJb SINE Alu 1 296 -16 797 272 53 49 chr1 84584868 84585223 -197608441 + MLT1J LTR MaLR 2 401 -110 427 240 88 65 chr1 84589541 84589895 -197603769 + L1ME4a LINE L1 5538 5899 -222 423 318 98 23 chr1 84589913 84590127 -197603537 - MIR SINE MIR -13 249 20 328 227 102 0 chr1 84590192 84590280 -197603384 + L1ME4a LINE L1 5956 6052 -69 22 35 0 0 chr1 84590304 84590333 -197603331 + AT_rich Low_complexity Low_complexity 1 29 0 37 97 0 0 chr1 84591660 84591774 -197601890 + AT_rich Low_complexity Low_complexity 1 114 0 30 27 0 0 chr1 84591923 84591960 -197601704 + AT_rich Low_complexity Low_complexity 1 37 0 33 25 0 0 chr1 84592922 84592962 -197600702 + AT_rich Low_complexity Low_complexity 1 40 0 231 61 0 0 chr1 84593178 84593211 -197600453 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 211 11 32 chr1 84593211 84593306 -197600358 + GA-rich Low_complexity Low_complexity 1 93 0 193 289 0 19 chr1 84594214 84594261 -197599403 + L2 LINE L2 3127 3172 -100 482 265 123 18 chr1 84594261 84594431 -197599233 - MER5A DNA MER1_type 0 189 2 378 297 51 36 chr1 84594626 84594764 -197598900 - MIR SINE MIR -83 179 40 293 243 27 0 chr1 84595183 84595257 -197598407 + L2 LINE L2 3238 3313 0 273 227 0 40 chr1 84596688 84596763 -197596901 + (CATATA)n Simple_repeat Simple_repeat 5 76 0 646 78 100 0 chr1 84596777 84596867 -197596797 - Tigger7 DNA MER2_type 0 2487 2389 * 1563 196 0 4 chr1 84596865 84597131 -197596533 - Tigger7 DNA MER2_type -466 267 3 279 0 0 0 chr1 84597131 84597162 -197596502 + (TG)n Simple_repeat Simple_repeat 2 32 0 312 209 0 0 chr1 84597178 84597269 -197596395 + GA-rich Low_complexity Low_complexity 2 92 0 244 257 143 0 chr1 84599722 84599792 -197593872 - L2 LINE L2 -48 3224 3145 192 182 0 0 chr1 84599815 84599859 -197593805 + (TG)n Simple_repeat Simple_repeat 1 44 0 * 463 56 28 0 chr1 84599858 84599929 -197593735 + (GA)n Simple_repeat Simple_repeat 1 73 0 209 254 141 0 chr1 84600339 84600410 -197593254 + MIR SINE MIR 46 126 -136 1920 169 68 0 chr1 84600410 84600776 -197592888 - MLT1A2-int LTR MaLR -1340 395 5 237 132 0 0 chr1 84600803 84600841 -197592823 + (TA)n Simple_repeat Simple_repeat 2 39 0 1444 170 131 33 chr1 84600873 84601209 -197592455 - MLT1A2 LTR MaLR -2 372 4 258 282 56 0 chr1 84601217 84601288 -197592376 - MIR SINE MIR -108 154 80 1706 206 80 48 chr1 84601712 84602188 -197591476 - MLT1D LTR MaLR -3 502 12 916 173 19 6 chr1 84602268 84602423 -197591241 - MSTD LTR MaLR 0 396 240 2480 193 35 7 chr1 84602423 84602880 -197590784 + LTR42 LTR ERVL 1 470 -25 225 114 0 0 chr1 84602890 84602925 -197590739 - MSTD LTR MaLR -144 252 218 226 284 57 0 chr1 84603123 84603211 -197590453 - MIR3 SINE MIR -6 202 110 182 103 0 26 chr1 84603661 84603700 -197589964 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 332 315 118 0 chr1 84604503 84604630 -197589034 - MIR SINE MIR -87 175 34 203 250 17 17 chr1 84604661 84604721 -197588943 + CT-rich Low_complexity Low_complexity 1 60 0 486 284 90 0 chr1 84604763 84604918 -197588746 - LTR16A LTR ERVL -23 427 259 511 264 50 33 chr1 84605223 84605405 -197588259 + MIR SINE MIR 45 229 -33 206 308 0 15 chr1 84605640 84605705 -197587959 - L2 LINE L2 -341 2973 2910 198 0 0 0 chr1 84605775 84605797 -197587867 + (TG)n Simple_repeat Simple_repeat 1 22 0 187 257 95 0 chr1 84606120 84606194 -197587470 - MIR SINE MIR -60 202 122 2189 115 55 25 chr1 84606412 84606776 -197586888 + THE1C LTR MaLR 1 375 0 327 182 10 91 chr1 84607045 84607144 -197586520 + L1MC4 LINE L1 6614 6704 -1338 194 150 25 0 chr1 84607430 84607470 -197586194 + GA-rich Low_complexity Low_complexity 4 44 0 813 172 0 0 chr1 84609317 84609439 -197584225 + FLAM_C SINE Alu 3 124 -19 351 282 94 42 chr1 84609636 84609849 -197583815 - MIR SINE MIR -10 252 29 471 264 20 76 chr1 84609977 84610174 -197583490 + MLT1L LTR MaLR 196 381 -234 317 228 20 20 chr1 84610236 84610337 -197583327 + MLT1L LTR MaLR 507 607 -8 1357 155 61 145 chr1 84611417 84611824 -197581840 + MLT1A2 LTR MaLR 1 373 -1 1606 171 77 20 chr1 84611951 84612302 -197581362 - MLT1B LTR MaLR 0 390 20 21 0 0 0 chr1 84613538 84613559 -197580105 + AT_rich Low_complexity Low_complexity 1 21 0 499 266 95 49 chr1 84614215 84614250 -197579414 + Charlie2 DNA MER1_type 44 76 -2706 1778 140 66 41 chr1 84614250 84614614 -197579050 + THE1C LTR MaLR 1 373 -2 499 266 95 49 chr1 84614614 84614841 -197578823 + Charlie2 DNA MER1_type 76 318 -2464 * 1311 183 4 19 chr1 84614829 84615091 -197578573 + Charlie2 DNA MER1_type 1836 2093 -769 274 344 0 0 chr1 84616779 84616869 -197576795 + MIR SINE MIR 2 91 -171 5429 119 57 48 chr1 84616888 84618054 -197575610 + MER11A LTR ERVK 1 1266 0 400 230 87 16 chr1 84618057 84618183 -197575481 + MIR SINE MIR 118 252 -10 289 314 42 8 chr1 84618250 84618368 -197575296 - L2 LINE L2 -3 3310 3189 216 191 21 0 chr1 84619816 84619863 -197573801 + C-rich Low_complexity Low_complexity 3 50 0 22 35 0 0 chr1 84620101 84620130 -197573534 + GC_rich Low_complexity Low_complexity 1 29 0 207 195 0 0 chr1 84620373 84620414 -197573250 + (CA)n Simple_repeat Simple_repeat 2 42 0 216 161 89 18 chr1 84620893 84620949 -197572715 + MIR3 SINE MIR 96 155 -53 183 359 55 55 chr1 84621200 84621417 -197572247 + L2 LINE L2 2949 3165 -107 380 351 22 45 chr1 84621547 84621769 -197571895 - MIR SINE MIR -34 228 12 1135 171 209 33 chr1 84622813 84623176 -197570488 - MSTC LTR MaLR -1 427 1 1452 238 15 12 chr1 84623193 84623533 -197570131 + MER58B DNA MER1_type 1 341 0 204 276 53 26 chr1 84623596 84623672 -197569992 + L2 LINE L2 3195 3272 0 353 232 0 0 chr1 84623762 84623831 -197569833 + MLT-int LTR MaLR 703 771 -964 1236 203 34 91 chr1 84624107 84624492 -197569172 + MLT1A1 LTR MaLR 3 365 0 670 227 128 12 chr1 84626139 84626311 -197567353 - MIR SINE MIR -69 193 2 1100 274 30 25 chr1 84628216 84628577 -197565087 + MLT1I LTR MaLR 47 409 0 254 307 67 0 chr1 84628577 84628652 -197565012 + MIR SINE MIR 70 149 -59 562 277 114 16 chr1 84628701 84628960 -197564704 - MIR SINE MIR -1 261 2 30 59 0 0 chr1 84629003 84629054 -197564610 + AT_rich Low_complexity Low_complexity 1 51 0 290 333 141 6 chr1 84630090 84630246 -197563418 - MIR SINE MIR -16 246 70 332 292 200 0 chr1 84630357 84630542 -197563122 - MIR SINE MIR -6 256 35 263 356 22 0 chr1 84630582 84630717 -197562947 + L3 LINE CR1 832 969 -608 288 256 32 88 chr1 84631136 84631261 -197562403 + MER91C DNA MER1_type 1 118 -22 328 323 127 26 chr1 84631403 84631632 -197562032 + L3 LINE CR1 1143 1394 -183 391 293 163 14 chr1 84632295 84632510 -197561154 - Charlie8 DNA MER1_type -2165 252 6 208 238 0 0 chr1 84634692 84634734 -197558930 + CT-rich Low_complexity Low_complexity 3 44 0 238 330 90 32 chr1 84635574 84635762 -197557902 - MIR SINE MIR -50 212 14 215 314 88 20 chr1 84636544 84636646 -197557018 - L2 LINE L2 -25 3247 3139 184 371 86 11 chr1 84636813 84637080 -197556584 - L2 LINE L2 -559 2755 2469 21 36 0 0 chr1 84637126 84637154 -197556510 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 84637456 84637477 -197556187 + AT_rich Low_complexity Low_complexity 1 21 0 732 231 0 0 chr1 84637489 84637632 -197556032 - FRAM SINE Alu -30 146 4 217 150 25 0 chr1 84637776 84637816 -197555848 - L2 LINE L2 0 3272 3232 296 274 0 29 chr1 84637891 84637993 -197555671 + (TATATG)n Simple_repeat Simple_repeat 6 104 0 29 18 8 0 chr1 84638154 84638234 -197555430 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr1 84638640 84638686 -197554978 + AT_rich Low_complexity Low_complexity 1 46 0 399 203 225 0 chr1 84639235 84639373 -197554291 + L2 LINE L2 2587 2755 -559 2207 57 0 0 chr1 84639533 84639798 -197553866 - AluY SINE Alu -10 301 37 880 304 99 41 chr1 84639798 84640160 -197553504 + L2 LINE L2 2929 3311 -2 195 278 119 63 chr1 84640396 84640522 -197553142 - MIR SINE MIR -13 249 117 199 392 25 38 chr1 84640622 84640780 -197552884 - L2 LINE L2 -182 3090 2935 27 29 0 0 chr1 84641332 84641366 -197552298 + AT_rich Low_complexity Low_complexity 1 34 0 207 246 0 0 chr1 84641600 84641657 -197552007 + (TA)n Simple_repeat Simple_repeat 2 58 0 5189 95 13 8 chr1 84641657 84642345 -197551319 - L1PA13 LINE L1 -9 6154 5460 1695 121 4 4 chr1 84642345 84642585 -197551079 - AluSx SINE Alu -30 282 43 5189 95 13 8 chr1 84642585 84642646 -197551018 - L1PA13 LINE L1 -703 5460 5401 1574 161 133 6 chr1 84643426 84643748 -197549916 + MLT1A1 LTR MaLR 1 363 -2 2180 99 0 33 chr1 84643771 84644074 -197549590 - AluY SINE Alu -14 297 5 469 360 141 7 chr1 84644472 84644891 -197548773 - L2 LINE L2 -836 2478 2004 23 33 0 0 chr1 84645742 84645772 -197547892 + AT_rich Low_complexity Low_complexity 1 30 0 1090 197 101 5 chr1 84645880 84646098 -197547566 - MER8 DNA MER2_type 0 239 1 23 86 0 0 chr1 84646178 84646236 -197547428 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr1 84646278 84646301 -197547363 + AT_rich Low_complexity Low_complexity 1 23 0 635 285 84 20 chr1 84646474 84646821 -197546843 - L1ME4a LINE L1 -245 5876 5508 1981 110 0 11 chr1 84647085 84647357 -197546307 - AluSx SINE Alu -43 269 1 225 193 34 57 chr1 84648628 84648716 -197544948 - MIR SINE MIR 0 262 177 234 356 87 34 chr1 84648959 84649108 -197544556 + MIR SINE MIR 95 251 -11 529 315 68 36 chr1 84651018 84651425 -197542239 + L2 LINE L2 2365 2983 -289 23 0 0 0 chr1 84651663 84651686 -197541978 + AT_rich Low_complexity Low_complexity 1 23 0 543 149 0 11 chr1 84651765 84651852 -197541812 + MLT1A1 LTR MaLR 1 86 -279 * 801 180 0 0 chr1 84651845 84651973 -197541691 + MLT1A1 LTR MaLR 225 352 -13 215 221 9 62 chr1 84652065 84652134 -197541530 + A-rich Low_complexity Low_complexity 4 66 -44 504 63 0 25 chr1 84652134 84652213 -197541451 + L1PA6 LINE L1 6078 6154 0 215 221 9 62 chr1 84652213 84652256 -197541408 + A-rich Low_complexity Low_complexity 66 110 0 624 323 15 20 chr1 84652856 84653051 -197540613 + MER91A DNA MER1_type 3 196 0 4381 178 31 26 chr1 84654701 84655873 -197537791 - L1MB4 LINE L1 0 6180 5004 1642 199 0 10 chr1 84655884 84656181 -197537483 + AluJb SINE Alu 17 310 -2 296 272 0 4 chr1 84656183 84656268 -197537396 - L1MB4 LINE L1 -1285 4861 4779 769 154 39 32 chr1 84656369 84656525 -197537139 - MLT1D LTR MaLR -8 497 341 641 158 6 101 chr1 84656514 84656672 -197536992 - MLT1D LTR MaLR -483 143 1 * 229 348 11 22 chr1 84656746 84656835 -197536829 + L2 LINE L2 3179 3266 -6 363 330 38 43 chr1 84657443 84657628 -197536036 - MIR SINE MIR 0 262 79 2055 160 29 87 chr1 84657656 84658107 -197535557 + MSTB LTR MaLR 2 426 0 386 216 201 46 chr1 84658988 84659182 -197534482 + MIR SINE MIR 37 260 -2 1070 249 85 25 chr1 84659298 84659664 -197534000 + L2 LINE L2 1610 1997 -1317 485 209 0 0 chr1 84659690 84659781 -197533883 - FLAM_A SINE Alu -51 91 1 341 185 11 87 chr1 84659816 84659908 -197533756 + MER21B LTR ERV1 12 96 -767 2537 259 103 11 chr1 84659912 84660638 -197533026 + MER21B LTR ERV1 19 811 -52 1297 249 79 34 chr1 84660679 84661124 -197532540 + L2 LINE L2 2067 2531 -783 875 273 275 25 chr1 84661148 84661674 -197531990 + L2 LINE L2 2660 3313 0 452 325 98 5 chr1 84661732 84661926 -197531738 + MIR SINE MIR 17 228 -34 202 305 113 26 chr1 84663509 84663660 -197530004 + MIR SINE MIR 89 252 -10 185 267 181 0 chr1 84663670 84663775 -197529889 + MIR SINE MIR 35 158 -104 1820 122 35 40 chr1 84663775 84664157 -197529507 + MSTA LTR MaLR 1 375 0 371 204 54 0 chr1 84664165 84664258 -197529406 + MIR SINE MIR 165 262 0 2413 73 7 3 chr1 84665127 84665430 -197528234 + AluY SINE Alu 1 304 -7 461 324 147 0 chr1 84665436 84665606 -197528058 - MIR SINE MIR -8 254 60 423 314 174 40 chr1 84665605 84665806 -197527858 - L2 LINE L2 -28 3285 3112 * 1907 149 68 11 chr1 84665806 84666175 -197527489 + MLT1B LTR MaLR 1 390 0 423 314 174 40 chr1 84666175 84666295 -197527369 - L2 LINE L2 -201 3112 2921 455 296 89 40 chr1 84666332 84666579 -197527085 - MIR SINE MIR -1 261 3 197 280 161 49 chr1 84667869 84668012 -197525652 - MIR SINE MIR -3 259 101 7604 148 13 65 chr1 84668696 84670271 -197523393 - L1PA11 LINE L1 -1913 4233 2741 5745 148 24 2 chr1 84670264 84671287 -197522377 + L1PA11 LINE L1 4257 5302 -844 * 2572 116 0 11 chr1 84671397 84671775 -197521889 + L1PA11 LINE L1 5799 6172 -2 405 262 124 35 chr1 84672256 84672401 -197521263 - MIR3 SINE MIR -6 202 45 23 0 0 0 chr1 84672698 84672721 -197520943 + AT_rich Low_complexity Low_complexity 1 23 0 295 327 64 0 chr1 84674748 84674858 -197518806 + MIR SINE MIR 20 136 -126 191 291 0 0 chr1 84675221 84675276 -197518388 - L2 LINE L2 -1881 1433 1379 273 83 0 0 chr1 84675703 84675739 -197517925 + MADE1 DNA Mariner 1 36 -44 414 293 176 34 chr1 84676251 84676456 -197517208 - MIR SINE MIR -26 236 3 2557 137 40 5 chr1 84677902 84678326 -197515338 - Tigger2 DNA MER2_type 0 2718 2280 339 164 33 0 chr1 84678326 84678387 -197515277 - Tigger2 DNA MER2_type -2647 71 9 605 312 102 0 chr1 84678685 84678890 -197514774 + MIR SINE MIR 31 256 -6 747 198 0 31 chr1 84679252 84679414 -197514250 + L1MB7 LINE L1 16 172 -6370 4888 237 73 66 chr1 84679415 84680982 -197512682 + L1MB7 LINE L1 861 2415 -4267 2327 81 3 0 chr1 84680982 84681303 -197512361 + AluY SINE Alu 1 322 0 4888 237 73 66 chr1 84681303 84682238 -197511426 + L1MB7 LINE L1 2415 3342 -3340 2113 119 0 17 chr1 84682238 84682540 -197511124 + AluSx SINE Alu 3 299 -13 4888 237 73 66 chr1 84682540 84683000 -197510664 + L1MB7 LINE L1 3342 3797 -2885 2100 126 3 0 chr1 84683000 84683294 -197510370 + AluSq SINE Alu 1 295 -18 4888 237 73 66 chr1 84683294 84683772 -197509892 + L1MB7 LINE L1 3797 4270 -2412 847 178 7 14 chr1 84683772 84683918 -197509746 + FRAM SINE Alu 18 162 -14 2417 73 0 0 chr1 84683918 84684207 -197509457 + AluY SINE Alu 1 289 -22 4888 237 73 66 chr1 84684207 84686130 -197507534 + L1MB7 LINE L1 4269 6518 -164 791 180 18 97 chr1 84686151 84686368 -197507296 + L1MB7 LINE L1 5976 6175 -9 4436 168 26 4 chr1 84686426 84687390 -197506274 + L1M2 LINE L1 4491 5480 -743 8309 200 31 29 chr1 84687399 84687766 -197505898 + L1M1 LINE L1 13 378 -7187 1647 173 58 30 chr1 84687766 84688131 -197505533 - THE1C LTR MaLR 0 375 1 8309 200 31 29 chr1 84688131 84689497 -197504167 + L1M1 LINE L1 378 1749 -5816 224 222 19 0 chr1 84689619 84689673 -197503991 + (TG)n Simple_repeat Simple_repeat 2 56 0 2179 114 0 3 chr1 84690082 84690381 -197503283 - AluSx SINE Alu -11 301 4 1956 143 43 37 chr1 84691272 84691622 -197502042 - THE1B LTR MaLR -12 352 1 288 397 17 9 chr1 84691773 84691889 -197501775 - MIR SINE MIR -64 144 28 2592 105 11 6 chr1 84692264 84692626 -197501038 + THE1B LTR MaLR 1 364 0 8132 126 25 40 chr1 84692626 84693983 -197499681 + THE1B-int LTR MaLR 1 1336 -244 1245 61 12 0 chr1 84694213 84694377 -197499287 - L1MA1 LINE L1 -4 6298 6133 22 35 0 0 chr1 84694477 84694506 -197499158 + AT_rich Low_complexity Low_complexity 1 29 0 363 328 240 0 chr1 84695042 84695234 -197498430 - MIR SINE MIR -18 244 7 243 0 0 0 chr1 84695657 84695684 -197497980 + (TG)n Simple_repeat Simple_repeat 1 27 0 1372 175 68 0 chr1 84696642 84696905 -197496759 + MLT2C1 LTR ERVL 116 396 -1 347 326 54 23 chr1 84696934 84697063 -197496601 + L2 LINE L2 3140 3272 0 189 261 22 0 chr1 84697185 84697231 -197496433 + MIR SINE MIR 78 124 -84 436 216 37 45 chr1 84699343 84699477 -197494187 - MER94 DNA DNA -1 133 1 21 36 0 0 chr1 84700058 84700086 -197493578 + AT_rich Low_complexity Low_complexity 1 28 0 231 264 19 0 chr1 84701077 84701130 -197492534 - L2 LINE L2 -68 3245 3192 346 331 209 14 chr1 84701434 84701923 -197491741 - L2 LINE L2 -1047 2267 1684 749 300 59 4 chr1 84703110 84703347 -197490317 - MIR SINE MIR 0 262 13 893 305 164 34 chr1 84703483 84704331 -197489333 - L2 LINE L2 0 3313 2350 970 136 41 53 chr1 84704331 84704500 -197489164 + FRAM SINE Alu 1 167 -9 403 267 60 0 chr1 84704544 84704660 -197489004 - L2 LINE L2 -1003 2311 2189 757 160 17 8 chr1 84704660 84704779 -197488885 + AluSq/x SINE Alu 5 124 -189 946 172 110 62 chr1 84704953 84705162 -197488502 - MER20 DNA MER1_type 0 219 1 24 53 0 0 chr1 84705421 84705459 -197488205 + AT_rich Low_complexity Low_complexity 1 38 0 190 288 63 45 chr1 84706889 84707000 -197486664 + MIR SINE MIR 81 193 -69 305 191 15 44 chr1 84707540 84707608 -197486056 - L2 LINE L2 0 3313 3248 1436 228 31 31 chr1 84708551 84708910 -197484754 + MLT2D LTR ERVL 1 359 -55 252 86 0 0 chr1 84708914 84708949 -197484715 + (TG)n Simple_repeat Simple_repeat 2 36 0 257 132 40 40 chr1 84708976 84709052 -197484612 + (TAGA)n Simple_repeat Simple_repeat 4 79 0 329 87 43 0 chr1 84709052 84709098 -197484566 + MLT2D LTR ERVL 367 414 0 373 317 227 16 chr1 84709720 84710222 -197483442 + L2 LINE L2 1387 1994 -1320 700 267 40 13 chr1 84710254 84710479 -197483185 - MIR SINE MIR -8 254 24 370 341 139 53 chr1 84710480 84711372 -197482292 + L2 LINE L2 2009 2977 -337 252 333 50 17 chr1 84711437 84711557 -197482107 + MER5A DNA MER1_type 63 186 -3 280 244 158 12 chr1 84711699 84711781 -197481883 + L2 LINE L2 3134 3227 -45 2393 92 0 0 chr1 84712226 84712519 -197481145 - AluSg SINE Alu -17 293 1 591 205 32 89 chr1 84712665 84712855 -197480809 - MIR SINE MIR -17 245 67 1022 167 52 5 chr1 84714549 84714741 -197478923 + MER3 DNA MER1_type 9 209 0 382 261 128 33 chr1 84714587 84714767 -197478897 - MER3 DNA MER1_type 0 209 13 * 617 306 61 38 chr1 84714801 84715147 -197478517 - L2 LINE L2 -1116 2198 1845 386 216 31 10 chr1 84715162 84715259 -197478405 - U6 snRNA snRNA -7 100 2 234 150 0 0 chr1 84715320 84715360 -197478304 + (TA)n Simple_repeat Simple_repeat 2 41 0 189 223 64 138 chr1 84716049 84716143 -197477521 - L2 LINE L2 -35 3237 3151 874 235 133 51 chr1 84716241 84716653 -197477011 + MLT1J1 LTR MaLR 1 446 0 209 372 62 35 chr1 84716674 84716900 -197476764 - L2 LINE L2 -216 3056 2825 2736 127 3 0 chr1 84717965 84718328 -197475336 - THE1B LTR MaLR 0 364 1 11662 95 17 32 chr1 84718328 84719933 -197473731 - THE1B-int LTR MaLR 0 1580 1 2112 130 47 44 chr1 84719934 84720137 -197473527 - THE1B LTR MaLR -1 363 157 1481 62 8 124 chr1 84720137 84720394 -197473270 + AluY SINE Alu 78 304 -7 2112 130 47 44 chr1 84720394 84720552 -197473112 - THE1B LTR MaLR -207 157 1 338 308 50 8 chr1 84721890 84722010 -197471654 + MIR SINE MIR 20 144 -118 1473 142 4 24 chr1 84722141 84722388 -197471276 + AluJo SINE Alu 57 298 -14 293 232 146 0 chr1 84723343 84723425 -197470239 - MIR SINE MIR -119 143 50 22 35 0 0 chr1 84723689 84723718 -197469946 + AT_rich Low_complexity Low_complexity 1 29 0 211 307 0 0 chr1 84725320 84725395 -197468269 + G-rich Low_complexity Low_complexity 1 75 0 497 236 176 14 chr1 84726300 84726448 -197467216 - MER5A DNA MER1_type 0 189 18 379 291 47 8 chr1 84726529 84726656 -197467008 - L3 LINE CR1 -61 1516 1385 521 153 41 31 chr1 84726720 84726818 -197466846 + Tigger5 DNA MER2_type 2225 2323 0 2862 149 16 25 chr1 84726837 84727327 -197466337 + Tigger7 DNA MER2_type 32 517 -1970 379 105 0 18 chr1 84727328 84727385 -197466279 + Tigger7 DNA MER2_type 2421 2476 -11 418 302 139 10 chr1 84727388 84727590 -197466074 + MIR SINE MIR 31 258 -4 190 370 62 0 chr1 84728703 84728784 -197464880 - L3 LINE CR1 -208 1369 1284 26 30 0 0 chr1 84728904 84728937 -197464727 + AT_rich Low_complexity Low_complexity 1 33 0 27 73 0 0 chr1 84729212 84729267 -197464397 + AT_rich Low_complexity Low_complexity 1 55 0 461 267 69 35 chr1 84729825 84730027 -197463637 - MLT1K LTR MaLR -2 586 378 22 0 0 0 chr1 84731927 84731949 -197461715 + AT_rich Low_complexity Low_complexity 1 22 0 588 311 87 39 chr1 84732188 84732743 -197460921 - L2 LINE L2 -266 3047 2399 6512 69 3 70 chr1 84732759 84733842 -197459822 - pTR5 LTR ERV1 0 2606 1520 * 12870 81 5 5 chr1 84733841 84735525 -197458139 - HERV9 LTR ERV1 -1961 6438 4756 12395 101 3 4 chr1 84735524 84737215 -197456449 - HERV9 LTR ERV1 -5427 2972 1283 * 739 193 27 13 chr1 84737214 84737364 -197456300 - HERV9 LTR ERV1 -8246 153 2 * 1853 77 0 0 chr1 84737388 84737621 -197456043 - LTR12 LTR ERV1 0 714 482 5565 89 105 4 chr1 84737621 84738371 -197455293 - LTR12 LTR ERV1 0 826 1 614 289 18 77 chr1 84738371 84738432 -197455232 - L2 LINE L2 -939 2375 2312 1992 184 31 26 chr1 84738432 84738818 -197454846 - MLT1B LTR MaLR 0 390 3 614 289 18 77 chr1 84738818 84739029 -197454635 - L2 LINE L2 -1002 2312 2119 212 281 99 41 chr1 84739324 84739495 -197454169 - L2 LINE L2 -93 3220 3040 607 127 0 0 chr1 84739498 84739577 -197454087 + AluSp/q SINE Alu 214 292 -21 297 328 93 16 chr1 84739577 84739760 -197453904 - L2 LINE L2 -264 3049 2853 565 311 83 10 chr1 84739805 84740082 -197453582 - L2 LINE L2 -625 2689 2389 2817 19 0 0 chr1 84740082 84740391 -197453273 + AluYa5 SINE Alu 1 309 -2 565 311 83 10 chr1 84740391 84740402 -197453262 - L2 LINE L2 -925 2389 2380 230 196 0 0 chr1 84740431 84740477 -197453187 + LTR66 LTR ERVL 394 439 -171 276 250 0 43 chr1 84740500 84740592 -197453072 + L1MC4 LINE L1 6615 6702 -1340 324 188 0 0 chr1 84740597 84740661 -197453003 + (CATA)n Simple_repeat Simple_repeat 4 67 0 220 280 96 72 chr1 84740663 84740718 -197452946 - L2 LINE L2 -1090 2224 2172 1104 192 18 40 chr1 84740718 84740942 -197452722 - MER20 DNA MER1_type 0 219 1 220 280 96 72 chr1 84740942 84741011 -197452653 - L2 LINE L2 -1142 2172 2097 197 303 69 62 chr1 84741650 84741795 -197451869 + L2 LINE L2 2717 2862 -452 242 354 62 9 chr1 84741835 84741948 -197451716 + MIR SINE MIR 20 138 -70 687 252 0 0 chr1 84742009 84742152 -197451512 + MER58B DNA MER1_type 198 340 -1 2086 104 42 0 chr1 84742411 84742699 -197450965 + AluSc SINE Alu 1 300 -9 2538 73 0 0 chr1 84743008 84743309 -197450355 + AluSx SINE Alu 1 301 -11 370 320 84 108 chr1 84743392 84743527 -197450137 + L2 LINE L2 2859 2996 -276 2231 112 0 16 chr1 84743527 84743839 -197449825 - AluSq SINE Alu -6 307 1 370 320 84 108 chr1 84743839 84744119 -197449545 + L2 LINE L2 2996 3264 -8 2253 91 17 0 chr1 84744119 84744415 -197449249 + AluSp SINE Alu 1 301 -12 25 51 0 0 chr1 84745261 84745300 -197448364 + AT_rich Low_complexity Low_complexity 1 39 0 231 319 109 8 chr1 84746249 84746368 -197447296 + MIR SINE MIR 48 178 -84 1216 187 0 0 chr1 84746499 84746702 -197446962 - MER105 DNA DNA -1 203 1 21 0 0 0 chr1 84747425 84747446 -197446218 + AT_rich Low_complexity Low_complexity 1 21 0 2416 183 76 19 chr1 84747899 84748424 -197445240 - L1MB3 LINE L1 0 6183 5629 2329 128 73 14 chr1 84748568 84748912 -197444752 + THE1B LTR MaLR 1 364 0 12826 89 2 2 chr1 84748912 84750487 -197443177 + THE1B-int LTR MaLR 1 1576 -4 1586 139 94 22 chr1 84750488 84750755 -197442909 + THE1B LTR MaLR 79 364 0 242 258 45 15 chr1 84751597 84751663 -197442001 + L2 LINE L2 3203 3270 -2 748 179 0 50 chr1 84752102 84752242 -197441422 - FLAM_C SINE Alu 0 133 1 2480 144 59 24 chr1 84752306 84752372 -197441292 - Tigger2 DNA MER2_type -1 2717 2655 1840 151 13 7 chr1 84752372 84752671 -197440993 - AluJb SINE Alu -11 301 1 2480 144 59 24 chr1 84752671 84753027 -197440637 - Tigger2 DNA MER2_type -63 2655 2280 459 143 0 14 chr1 84753025 84753095 -197440569 - Tigger2 DNA MER2_type -2649 69 1 * 189 357 141 22 chr1 84753204 84753389 -197440275 + L2 LINE L2 2973 3179 -93 378 326 35 7 chr1 84754571 84754712 -197438952 - L2 LINE L2 -2854 460 316 333 272 0 25 chr1 84754798 84754879 -197438785 - L2 LINE L2 0 3272 3194 350 315 99 0 chr1 84755227 84755338 -197438326 - L2 LINE L2 0 3313 3192 342 346 97 10 chr1 84755672 84756062 -197437602 + L1ME LINE L1 5311 5734 -387 24 53 0 0 chr1 84756475 84756513 -197437151 + AT_rich Low_complexity Low_complexity 1 38 0 228 229 135 42 chr1 84757067 84757163 -197436501 + LTR16A1 LTR ERVL 353 457 0 246 191 191 11 chr1 84757281 84757375 -197436289 + Charlie2 DNA MER1_type 2720 2830 -32 277 273 18 106 chr1 84757709 84757902 -197435762 + MER5A DNA MER1_type 1 189 0 305 271 82 41 chr1 84758109 84758231 -197435433 + MER91C DNA MER1_type 13 139 -1 5521 122 144 25 chr1 84758712 84759811 -197433853 + Tigger3b DNA MER2_type 1 1230 -1 464 244 42 128 chr1 84760172 84760484 -197433180 + MER102a DNA MER1_type 27 311 -19 753 229 30 6 chr1 84760573 84760739 -197432925 - MER45A DNA AcHobo 0 178 9 805 163 26 53 chr1 84761521 84761711 -197431953 - L1MC2 LINE L1 -23 6321 6137 383 274 40 62 chr1 84761724 84761998 -197431666 - L1MCb LINE L1 -4957 1597 1330 348 170 280 40 chr1 84762246 84762346 -197431318 - L2 LINE L2 0 3313 3190 294 259 0 0 chr1 84762403 84762461 -197431203 + L2 LINE L2 2992 3049 -223 3145 238 69 10 chr1 84763038 84764233 -197429431 - L1MC4 LINE L1 0 8042 6671 22 56 0 0 chr1 84769220 84769256 -197424408 + AT_rich Low_complexity Low_complexity 1 36 0 389 266 16 70 chr1 84770244 84770372 -197423292 + MIR3 SINE MIR 34 154 -54 3404 205 44 16 chr1 84772126 84773129 -197420535 - L1MB7 LINE L1 -12 6172 5143 233 215 0 25 chr1 84775574 84775653 -197418011 + CT-rich Low_complexity Low_complexity 3 79 0 277 201 0 0 chr1 84775746 84775823 -197417841 - L1MCb LINE L1 -4883 1162 1095 1106 263 94 35 chr1 84775823 84776165 -197417499 + MLT1E LTR MaLR 229 590 -3 851 215 126 5 chr1 84776185 84776408 -197417256 + MIR SINE MIR 12 261 -1 219 191 48 40 chr1 84776408 84776534 -197417130 + (TAA)n Simple_repeat Simple_repeat 2 128 0 996 280 79 21 chr1 84776552 84776931 -197416733 - MLT1I LTR MaLR -8 401 1 376 319 119 13 chr1 84777803 84778038 -197415626 + L1ME4a LINE L1 5267 5526 -636 311 278 74 79 chr1 84778053 84778269 -197415395 + L1ME4a LINE L1 5834 6048 -73 235 211 0 0 chr1 84778295 84778347 -197415317 - L1MC4 LINE L1 -5 8037 7986 2204 211 41 44 chr1 84778379 84779033 -197414631 - L1MC4 LINE L1 -150 7892 7241 1496 266 148 4 chr1 84779045 84779557 -197414107 - L1MC4 LINE L1 -990 7052 6467 814 234 137 0 chr1 84780022 84780219 -197413445 - MER58A DNA MER1_type 0 224 1 1884 18 2 0 chr1 84780469 84781283 -197412381 + L1PA3 LINE L1 5293 6152 -3 271 81 0 48 chr1 84785033 84785095 -197408569 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 766 283 113 32 chr1 84787694 84788378 -197405286 - L1ME LINE L1 -416 5754 4991 1867 124 4 11 chr1 84788378 84788651 -197405013 - AluSx SINE Alu -30 282 12 766 283 113 32 chr1 84788651 84788689 -197404975 - L1ME LINE L1 -1179 4991 4957 2166 201 31 31 chr1 84788836 84789324 -197404340 + MLT1D LTR MaLR 18 505 0 407 253 84 21 chr1 84789339 84789529 -197404135 - L1ME LINE L1 -1432 4714 4513 2258 84 3 0 chr1 84789564 84789875 -197403789 - L1PA10 LINE L1 -2 6166 5855 1406 253 59 37 chr1 84789875 84790333 -197403331 + MLT2B1 LTR ERVL 1 468 -52 22 0 0 0 chr1 84790428 84790450 -197403214 + AT_rich Low_complexity Low_complexity 1 22 0 843 258 98 37 chr1 84790675 84790805 -197402859 - MLT1J2 LTR MaLR 0 446 325 2335 144 26 35 chr1 84790805 84791235 -197402429 - MSTB LTR MaLR 0 426 1 9363 158 23 7 chr1 84791235 84792860 -197400804 - MSTB-int LTR MaLR 0 1651 1 2289 184 44 0 chr1 84792860 84793268 -197400396 - MSTB LTR MaLR 0 426 1 843 258 98 37 chr1 84793268 84793548 -197400116 - MLT1J2 LTR MaLR -120 326 10 378 303 55 36 chr1 84795285 84795450 -197398214 - MER5A DNA MER1_type -15 174 7 1096 147 215 32 chr1 84795534 84795785 -197397879 - AluSg SINE Alu -3 297 1 951 34 84 0 chr1 84795800 84795919 -197397745 - MER85 DNA T2_type -10 129 1 277 348 43 51 chr1 84796272 84796410 -197397254 + L2 LINE L2 3134 3270 -2 292 314 69 15 chr1 84796566 84796770 -197396894 + L1M4 LINE L1 4348 4562 -1584 302 28 0 0 chr1 84796826 84796862 -197396802 + LTR23 LTR ERV1 320 355 -82 24 0 0 0 chr1 84796866 84796890 -197396774 + AT_rich Low_complexity Low_complexity 1 24 0 1987 293 65 21 chr1 84796895 84797704 -197395960 - HERV16 LTR ERVL -2707 2289 1458 323 253 121 0 chr1 84797732 84797823 -197395841 - HERV16 LTR ERVL -3656 1340 1239 1015 268 13 0 chr1 84797878 84798109 -197395555 - HERV16 LTR ERVL -3869 1127 894 315 250 11 0 chr1 84798177 84798265 -197395399 - L1MC4 LINE L1 -811 7231 7143 301 273 150 31 chr1 84798573 84798674 -197394990 + HAL1b LINE L1 1034 1122 -226 1089 200 91 49 chr1 84798674 84799024 -197394640 - MLT1A1 LTR MaLR 0 365 1 301 273 150 31 chr1 84799024 84799182 -197394482 + HAL1b LINE L1 1122 1324 -24 580 314 134 41 chr1 84799694 84800187 -197393477 + L2 LINE L2 2052 2590 -724 294 270 86 63 chr1 84800190 84800364 -197393300 + L2 LINE L2 2445 2622 -692 237 304 184 19 chr1 84800375 84800533 -197393131 + L2 LINE L2 2304 2487 -827 1735 262 144 25 chr1 84800597 84800704 -197392960 - L1M4 LINE L1 -1399 4747 4654 2846 118 5 20 chr1 84800704 84801143 -197392521 - MSTB1 LTR MaLR 0 432 1 1735 262 144 25 chr1 84801143 84801940 -197391724 - L1M4 LINE L1 -1492 4654 3658 1768 136 35 55 chr1 84801940 84802286 -197391378 - MER44D DNA MER2_type 0 609 1 1735 262 144 25 chr1 84802286 84802410 -197391254 - L1M4 LINE L1 -2488 3658 3550 217 276 6 29 chr1 84803004 84803178 -197390486 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 * 361 191 60 18 chr1 84803083 84803251 -197390413 + (TATAA)n Simple_repeat Simple_repeat 2 176 0 * 415 178 40 23 chr1 84803215 84803462 -197390202 + (TTATA)n Simple_repeat Simple_repeat 1 251 0 392 145 60 42 chr1 84803496 84803662 -197390002 + (TATAA)n Simple_repeat Simple_repeat 3 171 0 43 56 0 0 chr1 84803666 84803737 -197389927 + AT_rich Low_complexity Low_complexity 1 71 0 2077 182 25 33 chr1 84806211 84806606 -197387058 - MSTB1 LTR MaLR 0 432 41 6581 51 1 0 chr1 84806617 84807435 -197386229 - L1PA6 LINE L1 -2 6152 5334 310 200 0 0 chr1 84807435 84807490 -197386174 - MSTB1 LTR MaLR -377 55 1 390 240 8 39 chr1 84807630 84807759 -197385905 - L1MEd LINE L1 -4943 1176 1052 890 303 112 57 chr1 84807803 84808449 -197385215 + L1MEd LINE L1 59 739 -5380 3585 198 53 17 chr1 84808501 84809350 -197384314 - L1MD3 LINE L1 -11 8025 7167 32 26 0 0 chr1 84809350 84809389 -197384275 + AT_rich Low_complexity Low_complexity 1 39 0 859 276 90 44 chr1 84809440 84809983 -197383681 + L1MEd LINE L1 895 1493 -4817 2682 172 76 4 chr1 84809989 84810500 -197383164 + MER44D DNA MER2_type 3 605 0 878 244 98 33 chr1 84810637 84811152 -197382512 + MLT1E2 LTR MaLR 1 557 -69 10341 170 55 53 chr1 84811165 84813572 -197380092 - Tigger1 DNA MER2_type 0 2418 8 2039 116 0 11 chr1 84813572 84813888 -197379776 + AluSx SINE Alu 1 313 0 312 203 0 0 chr1 84813899 84813963 -197379701 + MLT1E2 LTR MaLR 591 654 0 280 240 80 0 chr1 84814250 84814350 -197379314 - L1MEd LINE L1 -5058 1061 954 1300 223 81 10 chr1 84814457 84814798 -197378866 - MLT1A1 LTR MaLR 0 365 1 809 236 20 26 chr1 84814974 84815169 -197378495 + MIR SINE MIR 5 198 -64 298 227 93 31 chr1 84816757 84816854 -197376810 + MIR SINE MIR 94 196 -66 327 291 139 0 chr1 84816978 84817136 -197376528 - MIR SINE MIR -11 251 72 403 271 10 4 chr1 84817296 84817407 -197376257 + MIR3 SINE MIR 50 158 -50 250 273 68 0 chr1 84817418 84817506 -197376158 + MIR SINE MIR 101 194 -68 695 270 88 82 chr1 84817516 84818030 -197375634 - MLT1G1 LTR MaLR -2 593 77 192 371 63 19 chr1 84818533 84818692 -197374972 - MIR3 SINE MIR -19 189 24 313 271 4 142 chr1 84819195 84819420 -197374244 + HAL1b LINE L1 1129 1322 -26 1205 112 31 25 chr1 84819479 84819675 -197373989 + L1PA10 LINE L1 5971 6167 -1 258 56 0 0 chr1 84819711 84819747 -197373917 + (CA)n Simple_repeat Simple_repeat 2 37 0 366 309 41 0 chr1 84819754 84819877 -197373787 - MIR SINE MIR -58 204 77 2854 155 34 40 chr1 84819877 84820405 -197373259 - MER44D DNA MER2_type -1 704 180 210 277 46 0 chr1 84820464 84820529 -197373135 - L2 LINE L2 -15 3298 3231 1613 200 11 33 chr1 84821069 84821429 -197372235 - MLT1A1 LTR MaLR -12 353 2 188 198 222 25 chr1 84826716 84826797 -197366867 + L3 LINE CR1 787 883 -694 531 302 38 9 chr1 84827668 84827880 -197365784 - MIR SINE MIR -43 219 2 280 288 171 0 chr1 84828971 84829082 -197364582 - MIR SINE MIR -1 261 132 530 316 149 5 chr1 84829120 84829335 -197364329 - MIR SINE MIR -4 258 13 324 48 0 0 chr1 84830494 84830536 -197363128 + (TG)n Simple_repeat Simple_repeat 1 42 0 970 306 61 14 chr1 84830558 84830852 -197362812 - MLT1J LTR MaLR -102 409 102 27 62 0 0 chr1 84830876 84830924 -197362740 + AT_rich Low_complexity Low_complexity 1 48 0 86 60 0 0 chr1 84831121 84831270 -197362394 + AT_rich Low_complexity Low_complexity 1 149 0 226 250 0 0 chr1 84831354 84831406 -197362258 - MLT1K LTR MaLR 0 588 537 397 50 33 0 chr1 84831481 84831541 -197362123 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 606 270 184 0 chr1 84831568 84831753 -197361911 - MIR SINE MIR -38 224 6 31 26 0 0 chr1 84831835 84831873 -197361791 + AT_rich Low_complexity Low_complexity 1 38 0 286 263 78 58 chr1 84831885 84832128 -197361536 - L1MC4 LINE L1 -938 7104 6857 1100 272 76 23 chr1 84832508 84832901 -197360763 + L1MC4a LINE L1 5474 5887 -1921 1195 209 0 0 chr1 84834008 84834228 -197359436 + AluJo SINE Alu 85 304 -8 379 339 118 12 chr1 84834283 84834622 -197359042 + L1M4 LINE L1 4540 4914 -1232 204 40 0 0 chr1 84835112 84835137 -197358527 + (TG)n Simple_repeat Simple_repeat 1 25 0 26 74 0 0 chr1 84835209 84835263 -197358401 + AT_rich Low_complexity Low_complexity 1 54 0 295 318 33 23 chr1 84835446 84835781 -197357883 + L1M4 LINE L1 4487 4823 -1323 801 306 68 14 chr1 84835905 84836186 -197357478 + MLT1J LTR MaLR 216 511 0 1735 256 119 21 chr1 84836523 84837374 -197356290 - L2 LINE L2 -4 3309 2375 1547 339 83 14 chr1 84837419 84837994 -197355670 + MER115 DNA AcHobo 29 643 -50 312 313 73 57 chr1 84838208 84838400 -197355264 + MIR SINE MIR 59 253 -9 202 224 20 0 chr1 84838973 84839022 -197354642 + (TAG)n Simple_repeat Simple_repeat 1 50 0 2282 106 38 93 chr1 84839111 84839564 -197354100 - MSTA LTR MaLR 0 428 1 2990 180 11 2 chr1 84839717 84840289 -197353375 + L1MB2 LINE L1 5595 6171 0 2335 152 10 0 chr1 84840900 84841289 -197352375 - L1PA16 LINE L1 -9 6157 5765 293 258 11 75 chr1 84841575 84841668 -197351996 + MER21B LTR ERV1 27 113 -750 6903 125 12 3 chr1 84841689 84843265 -197350399 - L1MA1 LINE L1 0 6302 4714 1171 247 56 59 chr1 84843266 84843658 -197350006 + MER21B LTR ERV1 104 494 -369 927 219 46 19 chr1 84843658 84843895 -197349769 - L1M4 LINE L1 -1289 4857 4611 198 71 0 0 chr1 84843895 84843923 -197349741 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 927 219 46 19 chr1 84843923 84843945 -197349719 - L1M4 LINE L1 -1535 4611 4591 * 1575 252 63 24 chr1 84843944 84844527 -197349137 - L1MEc LINE L1 -3313 2902 2297 3629 261 31 3 chr1 84844535 84845679 -197347985 - L1M4 LINE L1 -2502 3644 2470 685 236 236 24 chr1 84845685 84845935 -197347729 - L1MEc LINE L1 -6079 317 15 742 186 96 30 chr1 84846030 84846197 -197347467 - MER58A DNA MER1_type -42 182 5 519 263 82 23 chr1 84847423 84847594 -197346070 - MIR3 SINE MIR -7 201 21 274 278 164 27 chr1 84848411 84848563 -197345101 - MIR SINE MIR -65 143 20 1549 152 0 0 chr1 84850127 84850358 -197343306 - AluJb SINE Alu -81 231 1 2042 132 0 0 chr1 84851506 84851818 -197341846 - AluSg SINE Alu 0 312 1 360 320 29 0 chr1 84851832 84851935 -197341729 - L2 LINE L2 -1 3312 3207 1022 205 31 15 chr1 84851936 84852131 -197341533 + MER58A DNA MER1_type 27 224 0 254 355 216 22 chr1 84852222 84852453 -197341211 - L2 LINE L2 -188 3084 2809 1706 130 214 8 chr1 84852820 84853175 -197340489 - MSTA LTR MaLR 0 428 1 832 110 0 8 chr1 84853175 84853302 -197340362 - MSTA-int LTR MaLR 0 1651 1526 2950 278 75 2 chr1 84853428 84854310 -197339354 - L2 LINE L2 -338 2976 2031 4379 176 9 12 chr1 84854456 84855258 -197338406 - THE1-int LTR MaLR -402 1178 427 13917 204 17 13 chr1 84855260 84858147 -197335517 - L1PA15-16 LINE L1 -1021 5828 2954 2164 122 0 0 chr1 84858147 84858441 -197335223 - AluSg SINE Alu -16 294 1 13917 204 17 13 chr1 84858441 84858478 -197335186 - L1PA15-16 LINE L1 -3895 2954 2919 2027 127 3 7 chr1 84858478 84858769 -197334895 - AluSg SINE Alu -20 290 1 13917 204 17 13 chr1 84858769 84859958 -197333706 - L1PA15-16 LINE L1 -3930 2919 1736 431 163 10 20 chr1 84860109 84860207 -197333457 - L1MB7 LINE L1 -1 6183 6087 1515 231 49 55 chr1 84860217 84860689 -197332975 - MLT1D LTR MaLR -8 497 29 314 111 0 0 chr1 84860724 84860769 -197332895 - L1MB7 LINE L1 -90 6094 6050 744 245 48 71 chr1 84860783 84861052 -197332612 + L2 LINE L2 3046 3308 -5 484 338 116 0 chr1 84861413 84861620 -197332044 - MIR SINE MIR -13 249 19 2081 153 111 5 chr1 84861625 84862012 -197331652 + MSTA LTR MaLR 1 428 0 9004 179 18 7 chr1 84862012 84863646 -197330018 + MSTA-int LTR MaLR 1 1651 0 1965 152 111 28 chr1 84863646 84864041 -197329623 + MSTA LTR MaLR 1 428 0 349 299 121 18 chr1 84864793 84864956 -197328708 + MIR SINE MIR 34 215 -47 7164 48 35 3 chr1 84865060 84866644 -197327020 - L1PA5 LINE L1 -8 6146 4526 342 0 0 0 chr1 84867579 84867617 -197326047 + (TG)n Simple_repeat Simple_repeat 2 39 0 309 345 123 5 chr1 84868005 84868208 -197325456 - MIR SINE MIR 0 262 36 3773 216 19 20 chr1 84868538 84869348 -197324316 + L1PB4 LINE L1 2689 3499 -2647 1878 179 0 0 chr1 84869348 84869660 -197324004 + AluSx SINE Alu 1 312 0 3773 216 19 20 chr1 84869660 84869859 -197323805 + L1PB4 LINE L1 3499 3697 -2449 42144 39 21 2 chr1 84869862 84875924 -197317740 + L1PA3 LINE L1 2 6155 0 6877 177 39 17 chr1 84875917 84876772 -197316892 + L1PB4 LINE L1 3684 4519 -1637 * 2046 144 51 23 chr1 84876772 84877126 -197316538 + THE1B LTR MaLR 1 364 0 11845 94 2 0 chr1 84877126 84878702 -197314962 + THE1B-int LTR MaLR 1 1580 0 2235 118 48 22 chr1 84878702 84879057 -197314607 + THE1B LTR MaLR 1 364 0 6877 177 39 17 chr1 84879057 84879613 -197314051 + L1PB4 LINE L1 4519 5061 -1095 2604 103 16 8 chr1 84879613 84879982 -197313682 + THE1C LTR MaLR 1 372 -3 6877 177 39 17 chr1 84879982 84880969 -197312695 + L1PB4 LINE L1 5061 6143 -13 882 119 20 26 chr1 84881018 84881169 -197312495 + L1P5 LINE L1 5390 5539 -617 355 306 58 112 chr1 84881259 84881413 -197312251 + L2 LINE L2 2583 2744 -570 2440 69 0 3 chr1 84881413 84881719 -197311945 - AluY SINE Alu 0 311 7 355 306 58 112 chr1 84881719 84881911 -197311753 + L2 LINE L2 2744 2910 -404 594 278 74 28 chr1 84881938 84882222 -197311442 + L2 LINE L2 3017 3313 0 23 0 0 0 chr1 84883240 84883263 -197310401 + AT_rich Low_complexity Low_complexity 1 23 0 257 366 24 8 chr1 84883822 84883945 -197309719 - MIR SINE MIR -71 191 67 538 136 144 17 chr1 84884380 84884498 -197309166 + LTR37B LTR ERV1 328 460 -8 433 227 153 18 chr1 84884498 84884661 -197309003 - MIR SINE MIR -19 243 59 789 263 3 122 chr1 84884683 84885010 -197308654 + L1PA13 LINE L1 54 341 -6498 * 4477 229 29 36 chr1 84884992 84885189 -197308475 + L1PA13 LINE L1 1685 1882 -4967 2073 123 10 3 chr1 84885189 84885498 -197308166 + AluSp SINE Alu 1 311 -2 4477 229 29 36 chr1 84885498 84886888 -197306776 + L1PA13 LINE L1 1882 3273 -3576 912 145 0 0 chr1 84886888 84887030 -197306634 + L1PA15 LINE L1 6011 6155 -10 232 266 48 113 chr1 84887241 84887365 -197306299 - L2 LINE L2 -4 3268 3153 475 318 39 0 chr1 84887425 84887554 -197306110 - L2 LINE L2 -1 3312 3179 30 59 0 0 chr1 84887687 84887738 -197305926 + AT_rich Low_complexity Low_complexity 1 51 0 271 304 129 5 chr1 84888669 84888870 -197304794 - HAL1 LINE L1 -187 2320 2095 226 262 16 0 chr1 84888920 84888981 -197304683 - HAL1 LINE L1 -631 1876 1815 1149 262 127 50 chr1 84889005 84889366 -197304298 - HAL1 LINE L1 -742 1765 1433 967 199 5 21 chr1 84889366 84889557 -197304107 + MER5A DNA MER1_type 1 188 -1 1149 262 127 50 chr1 84889557 84889985 -197303679 - HAL1 LINE L1 -1074 1433 902 2385 96 0 0 chr1 84889985 84890286 -197303378 - AluSg SINE Alu -9 301 1 1149 262 127 50 chr1 84890286 84890353 -197303311 - HAL1 LINE L1 -1605 902 842 3583 142 46 16 chr1 84890364 84890989 -197302675 - MER73 LTR ERVL 0 644 1 273 303 70 26 chr1 84890989 84891254 -197302410 + MLT1I LTR MaLR 87 407 -2 295 295 90 2 chr1 84891255 84891508 -197302156 + L1 LINE L1 4883 5160 -986 242 284 11 11 chr1 84891512 84891600 -197302064 + L1ME1 LINE L1 5093 5180 -966 17908 38 1 0 chr1 84891607 84893804 -197299860 - L1PA4 LINE L1 -1171 4975 2777 7533 33 0 0 chr1 84893804 84894956 -197298708 + L1PA4 LINE L1 5001 6152 -3 2438 236 63 42 chr1 84894957 84895871 -197297793 + L1ME1 LINE L1 5186 6122 -44 324 316 60 42 chr1 84896025 84896360 -197297304 + HAL1 LINE L1 1437 1777 -730 323 245 77 49 chr1 84896456 84896670 -197296994 + L1MCa LINE L1 2232 2458 -3968 324 305 30 6 chr1 84896924 84897091 -197296573 + L1MCa LINE L1 3140 3310 -3116 698 294 105 16 chr1 84897164 84897593 -197296071 - L1ME3 LINE L1 -327 5835 5369 2428 153 92 2 chr1 84897746 84898223 -197295441 - L1MB4 LINE L1 0 6180 5661 459 266 161 21 chr1 84898586 84898966 -197294698 + L1MCa LINE L1 4457 4889 -1537 226 200 0 36 chr1 84899102 84899157 -197294507 + L1MCa LINE L1 5015 5067 -1359 212 286 200 9 chr1 84899282 84899387 -197294277 + L3 LINE CR1 540 664 -913 225 286 0 39 chr1 84899481 84899558 -197294106 - MIR SINE MIR -31 231 158 954 307 154 18 chr1 84899618 84900132 -197293532 + L3 LINE CR1 818 1401 -176 371 245 93 17 chr1 84900195 84900329 -197293335 - L1ME3 LINE L1 0 6170 6026 209 333 69 74 chr1 84900415 84900604 -197293060 - L2 LINE L2 -194 3078 2891 709 256 37 66 chr1 84901222 84901464 -197292200 - MIR SINE MIR 0 262 28 342 257 216 7 chr1 84902056 84902204 -197291460 + MIR SINE MIR 5 183 -79 5422 123 0 10 chr1 84905136 84905661 -197288003 - L1PA13 LINE L1 -3 6160 5631 2062 143 34 17 chr1 84905661 84906019 -197287645 - THE1B LTR MaLR 0 364 1 11543 94 2 24 chr1 84906019 84907634 -197286030 - THE1B-int LTR MaLR 0 1580 1 2100 156 31 19 chr1 84907634 84907994 -197285670 - THE1B LTR MaLR 0 364 1 5422 123 0 10 chr1 84907994 84908429 -197285235 - L1PA13 LINE L1 -529 5634 5191 32629 76 4 8 chr1 84908432 84913760 -197279904 - L1PA6 LINE L1 0 6154 852 427 138 126 23 chr1 84913740 84913827 -197279837 - L1PA6 LINE L1 -6014 132 37 * 1139 135 0 0 chr1 84913827 84914005 -197279659 + HERVH LTR ERV1 1764 1941 -5772 1472 199 20 0 chr1 84914005 84914311 -197279353 - L1PA13 LINE L1 -941 5205 4894 509 120 0 0 chr1 84914310 84914385 -197279279 + L1P LINE L1 4004 4078 -2068 * 6970 48 23 0 chr1 84914387 84915743 -197277921 + L1PA6 LINE L1 4767 6140 -14 207 0 0 0 chr1 84915743 84915766 -197277898 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 6970 48 23 0 chr1 84915766 84915780 -197277884 + L1PA6 LINE L1 6140 6152 -2 386 183 0 0 chr1 84915949 84916009 -197277655 + AluJ/FLAM SINE Alu 1 60 -242 1493 154 23 4 chr1 84916023 84916283 -197277381 + L1P LINE L1 4068 4332 -1814 22082 185 22 28 chr1 84916291 84922844 -197270820 + L1PA11 LINE L1 11 7599 -13 436 314 0 0 chr1 84922866 84922971 -197270693 - MIR SINE MIR -107 155 51 323 186 221 0 chr1 84923112 84923225 -197270439 + L1MC1 LINE L1 3566 3703 -2443 5235 203 37 44 chr1 84923231 84924821 -197268843 + L1MC1 LINE L1 3870 5441 -892 2314 98 0 0 chr1 84924821 84925117 -197268547 + AluSc SINE Alu 3 298 -11 5235 203 37 44 chr1 84925117 84925841 -197267823 + L1MC1 LINE L1 5441 6168 -165 936 85 0 0 chr1 84925945 84926075 -197267589 + THE1B-int LTR MaLR 1449 1578 -2 718 87 115 0 chr1 84926077 84926170 -197267494 + THE1B LTR MaLR 1 109 -255 4032 133 103 28 chr1 84926170 84926934 -197266730 - LTR12 LTR ERV1 0 826 5 2692 178 18 26 chr1 84926950 84927557 -197266107 - pTR5 LTR ERV1 -1094 1344 743 1660 140 0 33 chr1 84927557 84927829 -197265835 + THE1B LTR MaLR 102 364 0 2284 51 3 10 chr1 84928307 84928600 -197265064 - L1PA7 LINE L1 -3 6151 5861 22 35 0 0 chr1 84929237 84929266 -197264398 + AT_rich Low_complexity Low_complexity 1 29 0 1022 270 90 56 chr1 84929663 84930143 -197263521 + L1ME LINE L1 2842 3304 -2842 1980 93 0 15 chr1 84930143 84930412 -197263252 + AluSx SINE Alu 40 304 -8 1022 270 90 56 chr1 84930412 84931055 -197262609 + L1ME LINE L1 3304 4003 -2143 314 299 67 31 chr1 84931168 84931621 -197262043 + L1ME LINE L1 4222 4707 -1439 335 331 98 35 chr1 84931665 84931775 -197261889 + L1ME LINE L1 4763 4865 -1281 1288 273 94 7 chr1 84931775 84932200 -197261464 + LTR16B LTR ERVL 1 462 -2 335 331 98 35 chr1 84932200 84932408 -197261256 + L1ME LINE L1 4865 5113 -1033 2317 87 0 0 chr1 84932408 84932707 -197260957 + AluY SINE Alu 1 299 -12 335 331 98 35 chr1 84932707 84932786 -197260878 + L1ME LINE L1 5113 5186 -960 663 279 103 39 chr1 84932845 84933143 -197260521 + MLT1J LTR MaLR 46 326 -124 674 338 66 9 chr1 84933338 84933776 -197259888 + L1ME LINE L1 5316 5778 -384 30 27 0 0 chr1 84933903 84933940 -197259724 + AT_rich Low_complexity Low_complexity 1 37 0 1652 166 14 4 chr1 84934028 84934348 -197259316 + AluJb SINE Alu 4 326 0 1680 118 29 5 chr1 84934867 84935201 -197258463 + MSTA LTR MaLR 1 428 0 570 208 20 0 chr1 84935914 84936015 -197257649 + MER45C DNA AcHobo 6 108 -845 281 253 120 0 chr1 84936267 84936342 -197257322 + MER45C DNA AcHobo 550 633 -320 242 178 22 0 chr1 84936339 84936384 -197257280 + MER45C DNA AcHobo 901 946 -7 * 1724 196 3 0 chr1 84937498 84937789 -197255875 - AluJo SINE Alu -18 294 3 1718 124 124 54 chr1 84938018 84938389 -197255275 - MER57A LTR ERV1 0 403 7 458 108 14 0 chr1 84938909 84938983 -197254681 + (CA)n Simple_repeat Simple_repeat 2 76 0 418 273 8 33 chr1 84941372 84941493 -197252171 - L2 LINE L2 -4 3309 3192 218 306 87 71 chr1 84941588 84941771 -197251893 - MIR SINE MIR -11 251 66 2459 54 0 3 chr1 84941812 84942106 -197251558 + AluY SINE Alu 1 293 -18 454 241 49 79 chr1 84942145 84942348 -197251316 - L2 LINE L2 -3 3310 3114 23 0 0 0 chr1 84942413 84942436 -197251228 + AT_rich Low_complexity Low_complexity 1 23 0 227 298 0 24 chr1 84942868 84942952 -197250712 + A-rich Low_complexity Low_complexity 5 86 0 347 271 12 0 chr1 84943584 84943669 -197249995 + L2 LINE L2 3214 3299 -14 29 0 0 0 chr1 84943682 84943711 -197249953 + AT_rich Low_complexity Low_complexity 1 29 0 730 312 34 8 chr1 84943902 84944136 -197249528 - MIR SINE MIR -3 259 20 21 57 0 0 chr1 84944312 84944347 -197249317 + AT_rich Low_complexity Low_complexity 1 35 0 371 326 61 7 chr1 84946564 84946711 -197246953 - MIR SINE MIR -59 203 49 185 291 51 25 chr1 84946841 84946920 -197246744 + L3b LINE CR1 1368 1448 -135 343 186 144 51 chr1 84947657 84947775 -197245889 - MLT1H LTR MaLR -420 129 1 484 284 68 19 chr1 84947779 84947941 -197245723 - MER5B DNA MER1_type -4 174 5 21 0 0 0 chr1 84948229 84948250 -197245414 + AT_rich Low_complexity Low_complexity 1 21 0 383 250 154 39 chr1 84948324 84948480 -197245184 - MER5B DNA MER1_type -4 174 1 271 327 50 10 chr1 84948583 84948684 -197244980 + L2 LINE L2 3160 3264 -8 857 276 93 16 chr1 84950806 84951237 -197242427 + HAL1b LINE L1 68 531 -817 266 287 0 0 chr1 84951557 84951644 -197242020 + HAL1b LINE L1 952 1038 -310 355 240 128 34 chr1 84951746 84951925 -197241739 + HAL1b LINE L1 1044 1239 -109 884 179 35 0 chr1 84952480 84952625 -197241039 + AluJb SINE Alu 129 278 -34 2417 68 3 7 chr1 84952631 84952938 -197240726 + AluY SINE Alu 1 306 -5 248 254 0 0 chr1 84953624 84953679 -197239985 - AluJ/FLAM SINE Alu -245 57 3 264 277 47 34 chr1 84953681 84953829 -197239835 + L1MCa LINE L1 1465 1614 -4812 * 763 226 50 68 chr1 84953824 84954413 -197239251 + L1MCa LINE L1 2278 2809 -3617 418 167 21 0 chr1 84954416 84954497 -197239167 - MLT1J1 LTR MaLR -244 206 122 210 278 44 56 chr1 84955965 84956055 -197237609 - MIR SINE MIR -110 152 64 382 345 14 14 chr1 84956192 84956337 -197237327 - MIR SINE MIR -71 191 47 1926 114 36 42 chr1 84956629 84956937 -197236727 + AluSx SINE Alu 7 312 0 821 255 59 0 chr1 84957126 84957330 -197236334 + MIR SINE MIR 6 221 -41 1455 152 158 21 chr1 84957355 84957685 -197235979 + THE1C LTR MaLR 1 375 0 634 234 142 5 chr1 84957727 84957924 -197235740 - MIR SINE MIR -36 226 3 233 383 96 37 chr1 84957955 84958143 -197235521 - L2 LINE L2 -481 2833 2635 329 320 72 87 chr1 84958549 84959226 -197234438 + L2 LINE L2 1165 1831 -1483 339 272 37 37 chr1 84959334 84959470 -197234194 + LTR16A1 LTR ERVL 322 457 0 * 457 267 45 45 chr1 84959470 84959627 -197234037 + MLT1L LTR MaLR 426 582 -33 228 301 61 131 chr1 84959654 84960129 -197233535 + L2 LINE L2 2232 2673 -641 2311 146 11 3 chr1 84960667 84961029 -197232635 + MLT1A1 LTR MaLR 1 365 0 508 211 55 8 chr1 84961410 84961538 -197232126 - MIR SINE MIR -9 253 120 43122 40 10 4 chr1 84961544 84967650 -197226014 + L1PA4 LINE L1 7 6152 -3 315 0 0 0 chr1 84967653 84967688 -197225976 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 321 219 0 0 chr1 84967688 84967752 -197225912 - MIR SINE MIR -130 132 69 1226 260 93 34 chr1 84967864 84968020 -197225644 - L2 LINE L2 0 3313 3168 405 0 0 0 chr1 84968020 84968065 -197225599 + (GA)n Simple_repeat Simple_repeat 2 46 0 1226 260 93 34 chr1 84968065 84968350 -197225314 - L2 LINE L2 -145 3168 2846 23 0 0 0 chr1 84968721 84968744 -197224920 + AT_rich Low_complexity Low_complexity 1 23 0 692 164 15 15 chr1 84968858 84968992 -197224672 + L1MC1 LINE L1 6200 6333 0 270 298 58 48 chr1 84968992 84969180 -197224484 + HAL1 LINE L1 97 286 -2221 332 330 41 23 chr1 84969253 84969474 -197224190 + HAL1 LINE L1 273 497 -2010 636 264 64 88 chr1 84969476 84970149 -197223515 + HAL1 LINE L1 1742 2398 -109 317 321 124 15 chr1 84970469 84970606 -197223058 + MIR SINE MIR 111 262 0 1493 188 113 22 chr1 84970622 84970984 -197222680 + MSTD LTR MaLR 2 396 0 2134 110 4 0 chr1 84971869 84972177 -197221487 - AluSg SINE Alu 0 309 1 225 191 21 0 chr1 84972279 84972326 -197221338 - MARNA DNA Mariner -63 523 476 21 0 0 0 chr1 84972628 84972649 -197221015 + AT_rich Low_complexity Low_complexity 1 21 0 216 209 0 0 chr1 84972882 84972925 -197220739 + T-rich Low_complexity Low_complexity 1 43 0 346 335 0 0 chr1 84973425 84973592 -197220072 + A-rich Low_complexity Low_complexity 1 167 0 276 184 0 0 chr1 84974508 84974557 -197219107 - L2 LINE L2 0 3313 3265 188 387 59 25 chr1 84974594 84974798 -197218866 - L2 LINE L2 -388 2926 2716 230 363 9 18 chr1 84974865 84974978 -197218686 - L2 LINE L2 -898 2416 2305 1780 171 13 10 chr1 84975094 84975398 -197218266 + AluSx SINE Alu 1 305 -7 515 250 167 0 chr1 84975971 84976127 -197217537 - MIR SINE MIR -18 244 63 5738 138 31 12 chr1 84976138 84976914 -197216750 - L1MA5A LINE L1 -6 6291 5531 236 30 30 0 chr1 84976914 84976947 -197216717 + (TTG)n Simple_repeat Simple_repeat 3 36 0 5738 138 31 12 chr1 84976947 84977347 -197216317 - L1MA5A LINE L1 -766 5531 5140 2228 110 3 0 chr1 84977347 84977647 -197216017 + AluSx SINE Alu 1 301 -11 5738 138 31 12 chr1 84977647 84978175 -197215489 - L1MA5A LINE L1 -1157 5140 4556 695 305 4 37 chr1 84978931 84979177 -197214487 + L2 LINE L2 2667 2904 -410 186 128 0 0 chr1 84979177 84979216 -197214448 + (TC)n Simple_repeat Simple_repeat 2 40 0 248 173 0 58 chr1 84979228 84979280 -197214384 - Alu SINE Alu -29 273 225 2446 140 105 7 chr1 84979381 84979830 -197213834 + Tigger1 DNA MER2_type 769 1261 -1157 305 332 130 65 chr1 84979849 84980111 -197213553 + L2 LINE L2 2986 3264 -8 2276 91 14 0 chr1 84980111 84980408 -197213256 + AluSp SINE Alu 1 301 -12 25 51 0 0 chr1 84981254 84981293 -197212371 + AT_rich Low_complexity Low_complexity 1 39 0 242 319 109 8 chr1 84982242 84982361 -197211303 + MIR SINE MIR 48 178 -84 1132 187 0 0 chr1 84982492 84982695 -197210969 - MER105 DNA DNA -1 203 1 21 0 0 0 chr1 84983417 84983438 -197210226 + AT_rich Low_complexity Low_complexity 1 21 0 2321 178 78 21 chr1 84983891 84984413 -197209251 - L1MB3 LINE L1 0 6183 5632 2160 128 73 14 chr1 84984560 84984904 -197208760 + THE1B LTR MaLR 1 364 0 12000 89 2 2 chr1 84984904 84986479 -197207185 + THE1B-int LTR MaLR 1 1576 -4 1556 142 94 22 chr1 84986480 84986747 -197206917 + THE1B LTR MaLR 79 364 0 248 258 45 15 chr1 84987855 84987921 -197205743 + L2 LINE L2 3203 3270 -2 693 179 0 50 chr1 84988360 84988500 -197205164 - FLAM_C SINE Alu 0 133 1 2408 143 59 30 chr1 84988564 84988630 -197205034 - Tigger2 DNA MER2_type -1 2717 2654 1815 152 14 7 chr1 84988630 84988926 -197204738 - AluJb SINE Alu -11 301 4 2408 143 59 30 chr1 84988926 84989285 -197204379 - Tigger2 DNA MER2_type -64 2654 2280 452 143 0 14 chr1 84989283 84989353 -197204311 - Tigger2 DNA MER2_type -2649 69 1 * 196 357 141 22 chr1 84989462 84989647 -197204017 + L2 LINE L2 2973 3179 -93 366 326 35 7 chr1 84990829 84990970 -197202694 - L2 LINE L2 -2854 460 316 341 272 0 25 chr1 84991056 84991137 -197202527 - L2 LINE L2 0 3272 3194 348 315 99 0 chr1 84991485 84991596 -197202068 - L2 LINE L2 0 3313 3192 300 339 105 18 chr1 84991930 84992320 -197201344 + L1ME LINE L1 5311 5734 -387 24 53 0 0 chr1 84992733 84992771 -197200893 + AT_rich Low_complexity Low_complexity 1 38 0 236 191 191 11 chr1 84993539 84993633 -197200031 + Charlie2 DNA MER1_type 2720 2830 -32 278 281 13 84 chr1 84993967 84994160 -197199504 + MER5A DNA MER1_type 1 189 0 311 271 82 41 chr1 84994367 84994489 -197199175 - MER91C DNA MER1_type -12 128 2 5513 122 144 25 chr1 84994970 84996069 -197197595 + Tigger3b DNA MER2_type 1 1230 -1 461 244 42 128 chr1 84996430 84996742 -197196922 + MER102a DNA MER1_type 27 311 -19 760 229 30 6 chr1 84996831 84996997 -197196667 - MER45A DNA AcHobo 0 178 9 783 165 27 53 chr1 84997779 84997967 -197195697 - L1MC2 LINE L1 -23 6321 6139 387 268 42 61 chr1 84997995 84998256 -197195408 - L1MEd LINE L1 -4969 1150 895 348 170 280 40 chr1 84998504 84998604 -197195060 - L2 LINE L2 0 3313 3190 294 259 0 0 chr1 84998661 84998719 -197194945 + L2 LINE L2 2992 3049 -223 3074 239 69 10 chr1 84999296 85000491 -197193173 - L1MC4 LINE L1 0 8042 6671 2365 100 3 0 chr1 85002191 85002500 -197191164 + AluSq SINE Alu 1 310 -3 708 221 117 29 chr1 85002578 85002818 -197190846 + L1MC4 LINE L1 7602 7862 -180 22 35 0 0 chr1 85003335 85003364 -197190300 + AT_rich Low_complexity Low_complexity 1 29 0 1823 121 6 82 chr1 85003505 85003820 -197189844 + AluSx SINE Alu 1 291 -21 2428 78 0 3 chr1 85003823 85004129 -197189535 + AluSx SINE Alu 1 305 -7 2079 120 10 13 chr1 85004141 85004450 -197189214 + AluSc SINE Alu 2 309 0 930 220 4 79 chr1 85004504 85004674 -197188990 - AluJo SINE Alu -22 290 142 2265 116 0 0 chr1 85004674 85004976 -197188688 - AluSx SINE Alu -10 302 1 930 220 4 79 chr1 85004976 85005046 -197188618 - AluJo SINE Alu -170 142 68 189 0 0 0 chr1 85005147 85005168 -197188496 + (CA)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr1 85006356 85006382 -197187282 + AT_rich Low_complexity Low_complexity 1 26 0 7383 39 2 0 chr1 85057493 85058911 -197134753 + L1PA4 LINE L1 4735 6152 -3 351 0 0 0 chr1 85058914 85058953 -197134711 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 321 219 0 0 chr1 85058953 85059017 -197134647 - MIR SINE MIR -130 132 69 1226 260 93 34 chr1 85059129 85059285 -197134379 - L2 LINE L2 0 3313 3168 405 0 0 0 chr1 85059285 85059330 -197134334 + (GA)n Simple_repeat Simple_repeat 2 46 0 1226 260 93 34 chr1 85059330 85059615 -197134049 - L2 LINE L2 -145 3168 2846 23 0 0 0 chr1 85059986 85060009 -197133655 + AT_rich Low_complexity Low_complexity 1 23 0 225 193 34 57 chr1 85060806 85060894 -197132770 - MIR SINE MIR 0 262 177 234 356 87 34 chr1 85061137 85061286 -197132378 + MIR SINE MIR 95 251 -11 529 315 68 36 chr1 85063196 85063603 -197130061 + L2 LINE L2 2365 2983 -289 23 0 0 0 chr1 85063841 85063864 -197129800 + AT_rich Low_complexity Low_complexity 1 23 0 543 149 0 11 chr1 85063943 85064030 -197129634 + MLT1A1 LTR MaLR 1 86 -279 * 801 180 0 0 chr1 85064023 85064151 -197129513 + MLT1A1 LTR MaLR 225 352 -13 215 221 9 62 chr1 85064243 85064312 -197129352 + A-rich Low_complexity Low_complexity 4 66 -44 504 63 0 25 chr1 85064312 85064391 -197129273 + L1PA6 LINE L1 6078 6154 0 215 221 9 62 chr1 85064391 85064434 -197129230 + A-rich Low_complexity Low_complexity 66 110 0 624 323 15 20 chr1 85065034 85065229 -197128435 + MER91A DNA MER1_type 3 196 0 4373 178 31 26 chr1 85066878 85068050 -197125614 - L1MB4 LINE L1 0 6180 5004 1642 199 0 10 chr1 85068061 85068358 -197125306 + AluJb SINE Alu 17 310 -2 296 272 0 4 chr1 85068360 85068445 -197125219 - L1MB4 LINE L1 -1285 4861 4779 769 154 39 32 chr1 85068546 85068702 -197124962 - MLT1D LTR MaLR -8 497 341 641 158 6 101 chr1 85068691 85068849 -197124815 - MLT1D LTR MaLR -483 143 1 * 229 348 11 22 chr1 85068923 85069012 -197124652 + L2 LINE L2 3179 3266 -6 363 330 38 43 chr1 85069620 85069805 -197123859 - MIR SINE MIR 0 262 79 2055 160 29 87 chr1 85069833 85070284 -197123380 + MSTB LTR MaLR 2 426 0 386 216 201 46 chr1 85071165 85071359 -197122305 + MIR SINE MIR 37 260 -2 1070 249 85 25 chr1 85071475 85071841 -197121823 + L2 LINE L2 1610 1997 -1317 485 209 0 0 chr1 85071865 85071956 -197121708 - FLAM_A SINE Alu -51 91 1 341 185 11 87 chr1 85071991 85072083 -197121581 + MER21B LTR ERV1 12 96 -767 2537 259 103 11 chr1 85072087 85072813 -197120851 + MER21B LTR ERV1 19 811 -52 1271 252 79 34 chr1 85072854 85073299 -197120365 + L2 LINE L2 2067 2531 -783 875 273 275 25 chr1 85073323 85073849 -197119815 + L2 LINE L2 2660 3313 0 524 307 88 5 chr1 85073907 85074099 -197119565 + MIR SINE MIR 17 224 -38 196 245 75 0 chr1 85074118 85074171 -197119493 - MIR SINE MIR -125 137 81 214 256 163 0 chr1 85075688 85075774 -197117890 + MIR SINE MIR 89 188 -74 185 267 181 0 chr1 85075850 85075955 -197117709 + MIR SINE MIR 35 158 -104 1820 122 35 40 chr1 85075955 85076337 -197117327 + MSTA LTR MaLR 1 375 0 371 204 54 0 chr1 85076345 85076438 -197117226 + MIR SINE MIR 165 262 0 2413 73 7 3 chr1 85077308 85077611 -197116053 + AluY SINE Alu 1 304 -7 461 324 147 0 chr1 85077617 85077787 -197115877 - MIR SINE MIR -8 254 60 423 314 174 40 chr1 85077786 85077987 -197115677 - L2 LINE L2 -28 3285 3112 * 1907 149 68 11 chr1 85077987 85078356 -197115308 + MLT1B LTR MaLR 1 390 0 423 314 174 40 chr1 85078356 85078476 -197115188 - L2 LINE L2 -201 3112 2921 455 296 89 40 chr1 85078513 85078760 -197114904 - MIR SINE MIR -1 261 3 197 280 161 49 chr1 85080050 85080193 -197113471 - MIR SINE MIR -3 259 101 7579 148 12 65 chr1 85080877 85082445 -197111219 - L1PA11 LINE L1 -1913 4233 2749 6387 102 2 5 chr1 85082445 85084344 -197109320 + L1PA11 LINE L1 4257 6172 -2 424 282 110 37 chr1 85084825 85084988 -197108676 - MIR3 SINE MIR -6 202 28 23 0 0 0 chr1 85085268 85085291 -197108373 + AT_rich Low_complexity Low_complexity 1 23 0 295 327 64 0 chr1 85087318 85087428 -197106236 + MIR SINE MIR 20 136 -126 191 291 0 0 chr1 85087791 85087846 -197105818 - L2 LINE L2 -1881 1433 1379 273 83 0 0 chr1 85088273 85088309 -197105355 + MADE1 DNA Mariner 1 36 -44 429 288 176 34 chr1 85088821 85089026 -197104638 - MIR SINE MIR -26 236 3 2557 137 40 5 chr1 85090472 85090896 -197102768 - Tigger2 DNA MER2_type 0 2718 2280 339 164 33 0 chr1 85090896 85090957 -197102707 - Tigger2 DNA MER2_type -2647 71 9 605 312 102 0 chr1 85091255 85091460 -197102204 + MIR SINE MIR 31 256 -6 747 198 0 31 chr1 85091822 85091984 -197101680 + L1MB7 LINE L1 16 172 -6370 4888 237 73 66 chr1 85091985 85093552 -197100112 + L1MB7 LINE L1 861 2415 -4267 2222 80 3 11 chr1 85093552 85093876 -197099788 + AluY SINE Alu 1 322 0 4888 237 73 66 chr1 85093876 85094811 -197098853 + L1MB7 LINE L1 2415 3342 -3340 2113 119 0 17 chr1 85094811 85095113 -197098551 + AluSx SINE Alu 3 299 -13 4888 237 73 66 chr1 85095113 85095573 -197098091 + L1MB7 LINE L1 3342 3797 -2885 2100 126 3 0 chr1 85095573 85095867 -197097797 + AluSq SINE Alu 1 295 -18 4888 237 73 66 chr1 85095867 85096345 -197097319 + L1MB7 LINE L1 3797 4270 -2412 847 178 7 14 chr1 85096345 85096491 -197097173 + FRAM SINE Alu 18 162 -14 2417 73 0 0 chr1 85096491 85096780 -197096884 + AluY SINE Alu 1 289 -22 4888 237 73 66 chr1 85096780 85098703 -197094961 + L1MB7 LINE L1 4269 6518 -164 791 180 18 97 chr1 85098724 85098941 -197094723 + L1MB7 LINE L1 5976 6175 -9 4436 168 26 4 chr1 85098999 85099963 -197093701 + L1M2 LINE L1 4491 5480 -743 11871 185 34 24 chr1 85099972 85100339 -197093325 + L1MA1 LINE L1 13 375 -7190 1647 173 58 30 chr1 85100339 85100704 -197092960 - THE1C LTR MaLR 0 375 1 11871 185 34 24 chr1 85100704 85102653 -197091011 + L1MA1 LINE L1 375 2352 -5213 14794 145 22 104 chr1 85102658 85106166 -197087498 + L1P LINE L1 12 3233 -2913 * 19693 77 31 1 chr1 85106165 85108828 -197084836 + L1PA8 LINE L1 2 2744 -3402 6964 66 7 1 chr1 85108828 85110020 -197083644 + L1PA8 LINE L1 4969 6166 -6 7123 152 38 18 chr1 85110020 85112189 -197081475 + L1MA1 LINE L1 2345 4566 -2999 1685 199 7 7 chr1 85112189 85112495 -197081169 + AluJb SINE Alu 1 306 -6 7123 152 38 18 chr1 85112495 85112616 -197081048 + L1MA1 LINE L1 4566 4683 -2882 10120 151 13 11 chr1 85112621 85113563 -197080101 + L1MA1 LINE L1 4803 5741 -1980 3016 78 10 10 chr1 85113563 85113976 -197079688 - L1PA10 LINE L1 -2 6166 5754 10120 151 13 11 chr1 85113976 85115937 -197077727 + L1MA1 LINE L1 5741 7716 -5 22 0 0 0 chr1 85115938 85115960 -197077704 + AT_rich Low_complexity Low_complexity 1 22 0 4983 138 19 4 chr1 85115960 85116779 -197076885 + L1MA9 LINE L1 5476 6307 -5 249 317 0 89 chr1 85117312 85117435 -197076229 + MIR SINE MIR 34 145 -63 320 244 100 39 chr1 85118025 85118186 -197075478 + MIR SINE MIR 42 208 -54 192 179 0 0 chr1 85118249 85118288 -197075376 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 310 70 0 chr1 85118288 85118388 -197075276 - L3 LINE CR1 -217 1360 1254 427 274 96 48 chr1 85118468 85118676 -197074988 + MIR SINE MIR 45 262 0 299 325 0 0 chr1 85118943 85119057 -197074607 - MER117 DNA MER1_type -37 160 47 255 255 29 69 chr1 85119349 85119451 -197074213 - L3 LINE CR1 -836 741 644 1664 224 72 105 chr1 85119563 85120346 -197073318 + LTR41 LTR ERVL 5 761 -12 534 325 54 51 chr1 85120685 85121017 -197072647 + ERVL LTR ERVL 366 698 -5066 1006 288 81 32 chr1 85121293 85122204 -197071460 + L1MEd LINE L1 592 1650 -840 1492 329 54 17 chr1 85122804 85123892 -197069772 + ERVL LTR ERVL 1703 2868 -2128 464 261 135 74 chr1 85124119 85124603 -197069061 - MLT1F LTR MaLR -64 526 22 308 312 75 59 chr1 85124627 85124974 -197068690 - MLT1F-int LTR MaLR -6 1729 1023 4964 137 18 9 chr1 85125374 85125474 -197068190 + L1MA2 LINE L1 4745 4843 -1461 1782 174 0 3 chr1 85125474 85125768 -197067896 + AluJb SINE Alu 1 293 -19 4964 137 18 9 chr1 85125768 85126925 -197066739 + L1MA2 LINE L1 4843 6004 -300 361 97 0 7 chr1 85126935 85127016 -197066648 + L1MA2 LINE L1 6107 6185 -117 21 36 0 0 chr1 85127102 85127130 -197066534 + AT_rich Low_complexity Low_complexity 1 28 0 14460 161 16 55 chr1 85127145 85127695 -197065969 - L1MA3 LINE L1 -40 7684 7114 1971 138 7 0 chr1 85127695 85127992 -197065672 - AluSx SINE Alu -13 299 1 14460 161 16 55 chr1 85127992 85129403 -197064261 - L1MA3 LINE L1 -610 7114 5650 5490 104 7 4 chr1 85129403 85130227 -197063437 - L1MA2 LINE L1 0 6304 5478 14460 161 16 55 chr1 85130227 85131884 -197061780 - L1MA3 LINE L1 -2074 5650 4345 2242 110 0 0 chr1 85131884 85132183 -197061481 + AluSx SINE Alu 1 299 -13 14460 161 16 55 chr1 85132183 85133763 -197059901 - L1MA3 LINE L1 -3379 4345 2706 814 316 13 12 chr1 85133761 85134159 -197059505 - L1PBb LINE L1 -5343 1505 1016 * 581 339 21 28 chr1 85134283 85134610 -197059054 - L1PBb LINE L1 -5831 1018 694 630 400 52 33 chr1 85134809 85135326 -197058338 - L1PBb LINE L1 -6313 536 10 1980 245 19 2 chr1 85135363 85135893 -197057771 + L1MC2 LINE L1 4316 4854 -1292 1521 161 12 0 chr1 85135889 85136132 -197057532 + L1MC2 LINE L1 5447 5692 -652 * 2764 161 22 24 chr1 85136134 85136687 -197056977 + L1MA6 LINE L1 5749 6300 0 3317 139 28 55 chr1 85136689 85137365 -197056299 + L1MC2 LINE L1 5678 6335 -9 404 281 80 44 chr1 85137427 85137676 -197055988 + L1ME2 LINE L1 4557 4814 -1332 1525 230 18 11 chr1 85137769 85138265 -197055399 - MLT2F LTR ERVL -119 544 1 230 246 64 35 chr1 85138316 85138487 -197055177 + L1ME2 LINE L1 5124 5299 -847 438 310 120 27 chr1 85138507 85139033 -197054631 + L1ME2 LINE L1 5341 5915 -249 306 0 0 0 chr1 85139063 85139097 -197054567 + (TG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr1 85139247 85139270 -197054394 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 258 338 12 2 chr1 85140023 85140188 -197053476 - MER117 DNA MER1_type 0 197 2 1510 173 109 16 chr1 85140270 85140645 -197053019 + LTR37A LTR ERV1 6 415 -11 297 305 95 38 chr1 85142038 85142143 -197051521 - MIR SINE MIR -62 146 36 912 299 223 16 chr1 85142281 85142820 -197050844 + L2 LINE L2 2529 3196 -117 391 330 89 72 chr1 85143199 85143602 -197050062 + L2 LINE L2 2842 3251 -21 22 35 0 0 chr1 85145236 85145265 -197048399 + AT_rich Low_complexity Low_complexity 1 29 0 199 200 0 0 chr1 85145715 85145750 -197047914 + L2 LINE L2 3274 3308 -5 339 221 144 19 chr1 85147190 85147294 -197046370 + L2 LINE L2 3193 3309 -4 26 0 0 0 chr1 85148087 85148113 -197045551 + AT_rich Low_complexity Low_complexity 1 26 0 218 341 24 12 chr1 85148194 85148276 -197045388 - L2 LINE L2 -213 3059 2977 31 0 0 0 chr1 85148276 85148307 -197045357 + AT_rich Low_complexity Low_complexity 1 31 0 495 349 97 26 chr1 85148481 85148977 -197044687 + L2 LINE L2 1600 2130 -1184 274 269 30 2 chr1 85149302 85149381 -197044283 - MIR SINE MIR -61 147 68 318 164 18 0 chr1 85149977 85150032 -197043632 - MER44D DNA MER2_type 0 705 650 3802 177 22 26 chr1 85150094 85150790 -197042874 - MER44D DNA MER2_type -40 565 1 354 275 84 15 chr1 85151624 85151755 -197041909 - MIR SINE MIR -9 253 114 * 785 331 45 8 chr1 85151752 85151997 -197041667 - L3 LINE CR1 -86 1491 1238 828 230 72 5 chr1 85152432 85152641 -197041023 - MIR SINE MIR -3 259 37 1573 170 39 39 chr1 85154635 85154970 -197038694 + MER44D DNA MER2_type 2 606 -3 427 324 70 11 chr1 85155077 85155262 -197038402 + MER91A DNA MER1_type 1 196 0 1250 231 124 24 chr1 85155807 85156266 -197037398 - MLT1D LTR MaLR 0 505 1 189 0 0 0 chr1 85157675 85157696 -197035968 + (A)n Simple_repeat Simple_repeat 1 21 0 189 74 0 0 chr1 85158094 85158121 -197035543 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 377 284 11 23 chr1 85158136 85158224 -197035440 - L2 LINE L2 -39 3233 3147 1535 173 36 7 chr1 85158282 85158560 -197035104 - MER61D LTR ERV1 0 501 216 635 126 12 176 chr1 85158615 85158812 -197034852 - MER61B LTR ERV1 -286 178 8 278 319 218 33 chr1 85158894 85159229 -197034435 + L3 LINE CR1 1180 1576 -1 206 118 0 0 chr1 85159241 85159275 -197034389 + (T)n Simple_repeat Simple_repeat 1 34 0 1948 218 34 39 chr1 85159845 85160312 -197033352 + MLT1F LTR MaLR 78 542 0 326 198 81 0 chr1 85160456 85160542 -197033122 + L1ME4a LINE L1 5822 5914 -207 399 234 113 16 chr1 85160582 85160706 -197032958 - MLT1H LTR MaLR -5 544 409 328 286 6 27 chr1 85161200 85161429 -197032235 + A-rich Low_complexity Low_complexity 1 224 0 395 163 14 142 chr1 85161530 85161671 -197031993 - LTR37A LTR ERV1 -286 140 18 404 248 186 7 chr1 85161721 85161866 -197031798 + L1MC4a LINE L1 7432 7602 -206 3183 160 2 22 chr1 85161869 85162408 -197031256 + MER44D DNA MER2_type 2 584 -21 871 192 29 0 chr1 85162421 85162593 -197031071 + L1MC4 LINE L1 7685 7861 -181 1393 169 137 20 chr1 85162593 85162937 -197030727 + LTR54B LTR ERV1 1 384 -114 802 108 48 0 chr1 85163450 85163636 -197030028 + L1MA7 LINE L1 5986 6286 -5 21 36 0 0 chr1 85163636 85163664 -197030000 + AT_rich Low_complexity Low_complexity 1 28 0 3312 110 8 2 chr1 85163677 85164167 -197029497 - L1PA15 LINE L1 -4 6161 5669 469 250 102 49 chr1 85165260 85165449 -197028215 + MIR SINE MIR 6 206 -56 209 278 44 56 chr1 85166377 85166467 -197027197 - MIR SINE MIR -110 152 64 378 345 14 14 chr1 85166604 85166749 -197026915 - MIR SINE MIR -71 191 47 1719 150 32 41 chr1 85167035 85167349 -197026315 + AluSx SINE Alu 1 311 -1 814 255 59 0 chr1 85167538 85167742 -197025922 + MIR SINE MIR 6 221 -41 1456 152 158 21 chr1 85167767 85168097 -197025567 + THE1C LTR MaLR 1 375 0 627 234 142 5 chr1 85168139 85168336 -197025328 - MIR SINE MIR -36 226 3 235 383 96 37 chr1 85168367 85168555 -197025109 - L2 LINE L2 -481 2833 2635 337 320 72 87 chr1 85168961 85169638 -197024026 + L2 LINE L2 1165 1831 -1483 299 284 31 31 chr1 85169755 85169882 -197023782 + LTR16A1 LTR ERVL 331 457 0 * 401 267 45 45 chr1 85169882 85170039 -197023625 + MLT1L LTR MaLR 426 582 -33 235 301 61 131 chr1 85170066 85170541 -197023123 + L2 LINE L2 2232 2673 -641 2311 146 11 3 chr1 85171079 85171441 -197022223 + MLT1A1 LTR MaLR 1 365 0 498 211 55 8 chr1 85171822 85171950 -197021714 - MIR SINE MIR -9 253 120 41189 40 10 4 chr1 85171956 85178043 -197015621 + L1PA4 LINE L1 7 6132 -23 263 277 0 0 chr1 85178423 85178488 -197015176 - MLT1F LTR MaLR -457 85 21 1892 207 71 69 chr1 85179319 85179869 -197013795 + MLT2B3 LTR ERVL 3 553 -1 336 306 204 24 chr1 85180228 85180434 -197013230 - MIR SINE MIR 0 262 20 24 0 0 0 chr1 85181076 85181100 -197012564 + AT_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr1 85181839 85181889 -197011775 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr1 85181982 85182006 -197011658 + AT_rich Low_complexity Low_complexity 1 24 0 1531 85 45 18 chr1 85182130 85182354 -197011310 - MER30 DNA MER1_type 0 230 1 199 349 71 16 chr1 85182922 85183048 -197010616 + MIR SINE MIR 15 147 -115 23 33 0 0 chr1 85185165 85185195 -197008469 + AT_rich Low_complexity Low_complexity 1 30 0 535 244 306 13 chr1 85186190 85186360 -197007304 - L1ME4a LINE L1 -3 6118 5999 1128 34 41 0 chr1 85186360 85186507 -197007157 - L1PA4 LINE L1 -2 6153 6001 535 244 306 13 chr1 85186507 85186647 -197007017 - L1ME4a LINE L1 -122 5999 5717 520 269 113 46 chr1 85186823 85187169 -197006495 - L1ME4a LINE L1 -124 5997 5629 241 219 87 43 chr1 85187284 85187473 -197006191 - L1ME4a LINE L1 -725 5426 5269 1662 175 3 18 chr1 85187637 85187922 -197005742 + AluJb SINE Alu 1 281 -31 281 26 26 0 chr1 85187925 85187963 -197005701 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1231 188 27 62 chr1 85188515 85188807 -197004857 + AluJo SINE Alu 1 282 -30 639 112 0 0 chr1 85188810 85188908 -197004756 + (TA)n Simple_repeat Simple_repeat 2 99 0 844 124 0 16 chr1 85189113 85189242 -197004422 + AluJo SINE Alu 11 137 -175 189 0 0 0 chr1 85189481 85189502 -197004162 + (A)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr1 85190334 85190368 -197003296 + AT_rich Low_complexity Low_complexity 1 34 0 40509 35 22 1 chr1 85190497 85196519 -196997145 - L1PA3 LINE L1 -7 6148 2 30 45 0 0 chr1 85197187 85197231 -196996433 + AT_rich Low_complexity Low_complexity 1 44 0 1847 121 0 4 chr1 85197573 85197830 -196995834 + AluSc SINE Alu 26 281 -28 297 167 0 0 chr1 85197843 85197897 -196995767 + (TG)n Simple_repeat Simple_repeat 2 55 0 349 243 10 0 chr1 85197912 85198015 -196995649 + L1MC4 LINE L1 1996 6983 -1339 489 211 125 19 chr1 85198234 85198338 -196995326 + FLAM_A SINE Alu 6 120 -22 31 0 0 0 chr1 85199626 85199657 -196994007 + AT_rich Low_complexity Low_complexity 1 31 0 502 203 14 101 chr1 85200250 85200398 -196993266 + L2 LINE L2 3134 3268 -4 225 0 0 0 chr1 85200500 85200525 -196993139 + (CAA)n Simple_repeat Simple_repeat 2 26 0 213 246 221 33 chr1 85201037 85201159 -196992505 - MIR SINE MIR -58 204 60 189 368 33 40 chr1 85201401 85201553 -196992111 - L2 LINE L2 0 3272 3122 21 0 0 0 chr1 85201867 85201888 -196991776 + AT_rich Low_complexity Low_complexity 1 21 0 526 209 78 0 chr1 85202722 85202837 -196990827 - L2 LINE L2 0 3313 3190 393 318 9 25 chr1 85204400 85204558 -196989106 - MIR3 SINE MIR -73 135 3 24 0 0 0 chr1 85205198 85205222 -196988442 + AT_rich Low_complexity Low_complexity 1 24 0 321 314 136 8 chr1 85205818 85205936 -196987728 + L2 LINE L2 3136 3268 -4 231 36 0 0 chr1 85207257 85207285 -196986379 + (TG)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr1 85207284 85207306 -196986358 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 321 26 0 0 chr1 85208020 85208058 -196985606 + (CA)n Simple_repeat Simple_repeat 2 39 0 422 297 90 0 chr1 85209610 85209755 -196983909 + MIR SINE MIR 49 206 -56 21 36 0 0 chr1 85210219 85210247 -196983417 + AT_rich Low_complexity Low_complexity 1 28 0 284 313 62 0 chr1 85211152 85211248 -196982416 + MIR SINE MIR 1 102 -160 244 320 107 10 chr1 85211472 85211575 -196982089 - L2 LINE L2 -5 3267 3155 203 341 68 0 chr1 85212168 85212256 -196981408 + MIR SINE MIR 9 102 -160 211 185 0 31 chr1 85212896 85212961 -196980703 + GA-rich Low_complexity Low_complexity 2 64 0 288 0 0 0 chr1 85216376 85216408 -196977256 + (CA)n Simple_repeat Simple_repeat 2 33 0 344 278 171 57 chr1 85220240 85220485 -196973179 - L1M2 LINE L1 -5825 1024 752 189 115 0 0 chr1 85221980 85222006 -196971658 + MIR SINE MIR 122 147 -115 21 71 0 0 chr1 85228206 85228248 -196965416 + AT_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr1 85229005 85229035 -196964629 + AT_rich Low_complexity Low_complexity 1 30 0 242 268 55 122 chr1 85231009 85231173 -196962491 - L2 LINE L2 -61 3211 3059 226 250 83 21 chr1 85231565 85231661 -196962003 - MER5A DNA MER1_type -1 188 87 743 148 7 70 chr1 85232310 85232452 -196961212 - FLAM_C SINE Alu 0 133 1 207 0 0 0 chr1 85233092 85233115 -196960549 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1713 164 25 4 chr1 85233176 85233457 -196960207 - AluJb SINE Alu -25 287 1 1622 209 14 0 chr1 85233570 85233853 -196959811 + AluJb SINE Alu 2 288 -24 2316 99 13 0 chr1 85234282 85234584 -196959080 - AluSg SINE Alu -4 306 1 391 249 68 104 chr1 85234774 85235144 -196958520 + L3 LINE CR1 840 1269 -308 233 299 26 26 chr1 85235190 85235267 -196958397 + L3 LINE CR1 1376 1452 -125 617 298 43 26 chr1 85236148 85236500 -196957164 - L1ME LINE L1 -375 5746 5389 2310 101 3 3 chr1 85236705 85237013 -196956651 - AluSg SINE Alu -2 308 1 216 0 0 0 chr1 85237014 85237038 -196956626 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2008 125 7 0 chr1 85237038 85237318 -196956346 - AluSg SINE Alu -28 282 1 2540 66 0 0 chr1 85238840 85239143 -196954521 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 85239763 85239786 -196953878 + AT_rich Low_complexity Low_complexity 1 23 0 2047 134 0 0 chr1 85239823 85240151 -196953513 - AluSx SINE Alu 0 328 1 1959 270 100 24 chr1 85241058 85242725 -196950939 - L1ME3A LINE L1 -8 6145 4353 310 283 0 0 chr1 85242713 85242805 -196950859 - L1ME3A LINE L1 -4774 1536 1445 * 329 192 63 0 chr1 85242943 85243039 -196950625 - L1MEc LINE L1 -4862 1271 1041 328 235 113 26 chr1 85243057 85243172 -196950492 - L1MEc LINE L1 -5091 1028 904 1610 174 57 18 chr1 85247357 85247691 -196945973 + MLT1A1 LTR MaLR 19 365 0 505 320 118 13 chr1 85247771 85247999 -196945665 - MIR SINE MIR -8 254 3 302 236 113 56 chr1 85248000 85248195 -196945469 - L1ME LINE L1 -396 5725 5520 22 88 0 0 chr1 85248234 85248291 -196945373 + AT_rich Low_complexity Low_complexity 1 57 0 942 179 92 43 chr1 85248373 85248580 -196945084 - AluJo SINE Alu -95 217 1 218 342 139 0 chr1 85249226 85249305 -196944359 + L2 LINE L2 3159 3248 -24 270 301 106 18 chr1 85249479 85249592 -196944072 + MIR SINE MIR 25 147 -61 707 299 33 5 chr1 85250777 85250991 -196942673 + MIR SINE MIR 25 244 -18 335 258 0 31 chr1 85251075 85251172 -196942492 + L2 LINE L2 2966 3059 -213 2120 133 0 13 chr1 85251824 85252133 -196941531 - AluSq SINE Alu -8 305 1 277 239 45 0 chr1 85252355 85252422 -196941242 + MIR SINE MIR 37 106 -156 731 249 87 97 chr1 85252422 85252824 -196940840 + L2 LINE L2 2495 2892 -422 533 267 138 26 chr1 85252843 85253075 -196940589 + MIR SINE MIR 2 259 -3 222 91 0 0 chr1 85253991 85254024 -196939640 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 390 348 43 16 chr1 85254224 85254408 -196939256 - MER5A DNA MER1_type 0 189 1 366 235 219 17 chr1 85254511 85254630 -196939034 - MIR SINE MIR -73 189 47 237 33 0 0 chr1 85255018 85255048 -196938616 + (TTA)n Simple_repeat Simple_repeat 2 31 0 255 189 0 38 chr1 85256311 85256364 -196937300 - MIR3 SINE MIR -22 186 136 673 235 113 65 chr1 85256770 85256981 -196936683 - MIR SINE MIR -3 259 33 2624 52 3 0 chr1 85256981 85257288 -196936376 - AluY SINE Alu -3 308 1 673 235 113 65 chr1 85257288 85257323 -196936341 - MIR SINE MIR -229 33 1 959 102 199 53 chr1 85257495 85257701 -196935963 + MER46A DNA MER2_type 1 236 0 189 107 0 0 chr1 85258117 85258145 -196935519 + (CA)n Simple_repeat Simple_repeat 2 29 0 212 175 0 0 chr1 85258392 85258432 -196935232 + T-rich Low_complexity Low_complexity 1 40 0 5074 116 23 1 chr1 85258435 85259257 -196934407 - L1PB1 LINE L1 -2 6149 5310 260 68 0 23 chr1 85259257 85259301 -196934363 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 36365 86 6 9 chr1 85259301 85265437 -196928227 - L1PA6 LINE L1 -24 6130 11 2594 210 4 40 chr1 85265450 85265971 -196927693 - L1PB1 LINE L1 -840 5306 4815 2354 104 3 0 chr1 85265971 85266279 -196927385 - AluSp SINE Alu -4 309 1 2594 210 4 40 chr1 85266279 85266456 -196927208 - L1PB1 LINE L1 -1331 4815 4633 607 165 39 0 chr1 85266651 85266754 -196926910 + U6 snRNA snRNA 1 107 0 15773 198 32 4 chr1 85266758 85270075 -196923589 + L1P LINE L1 1510 4918 -1228 316 295 0 0 chr1 85270426 85270504 -196923160 - MIR SINE MIR -119 143 66 370 306 83 6 chr1 85271957 85272114 -196921550 - L3 LINE CR1 -200 1377 1209 21 57 0 0 chr1 85272990 85273025 -196920639 + AT_rich Low_complexity Low_complexity 1 35 0 214 330 94 0 chr1 85273393 85273499 -196920165 + L2 LINE L2 3182 3297 -16 287 346 48 79 chr1 85273598 85273826 -196919838 - L2 LINE L2 -87 3185 2965 301 210 86 0 chr1 85274533 85274614 -196919050 + L1ME1 LINE L1 6059 6146 -20 207 130 0 43 chr1 85274641 85274687 -196918977 + (GAGAA)n Simple_repeat Simple_repeat 2 45 0 654 241 105 11 chr1 85275612 85275803 -196917861 + MIR SINE MIR 53 261 -1 280 353 20 0 chr1 85276125 85276227 -196917437 + MIR3 SINE MIR 98 201 -7 2161 128 0 3 chr1 85276294 85276599 -196917065 - AluSx SINE Alu -8 304 1 455 273 180 0 chr1 85276964 85277114 -196916550 - MER5A DNA MER1_type -3 186 10 241 314 176 20 chr1 85278502 85278655 -196915009 - MIR3 SINE MIR -1 207 31 447 259 63 44 chr1 85278750 85278908 -196914756 - MIR SINE MIR -31 231 71 236 149 21 0 chr1 85279345 85279392 -196914272 + CT-rich Low_complexity Low_complexity 1 48 0 258 345 36 0 chr1 85279550 85279634 -196914030 - L2 LINE L2 -55 3258 3172 26 55 0 41 chr1 85280690 85280763 -196912901 + AT_rich Low_complexity Low_complexity 1 70 0 2150 107 10 0 chr1 85283508 85283798 -196909866 - AluY SINE Alu -18 293 1 22 56 0 0 chr1 85284117 85284153 -196909511 + AT_rich Low_complexity Low_complexity 1 36 0 2175 123 7 0 chr1 85284859 85285169 -196908495 + AluSx SINE Alu 1 312 0 25 65 0 0 chr1 85285176 85285222 -196908442 + AT_rich Low_complexity Low_complexity 1 46 0 24 53 0 0 chr1 85285575 85285613 -196908051 + AT_rich Low_complexity Low_complexity 1 38 0 1927 162 0 14 chr1 85288081 85288377 -196905287 - AluJb SINE Alu -20 292 1 345 308 38 44 chr1 85288379 85288538 -196905126 - MER5A DNA MER1_type -6 183 26 344 280 74 53 chr1 85290691 85290880 -196902784 - MIR3 SINE MIR -6 202 10 3664 165 48 33 chr1 85291287 85291748 -196901916 + MER44D DNA MER2_type 1 350 -2137 2045 147 0 0 chr1 85291748 85292047 -196901617 - AluSx SINE Alu -12 300 2 3664 165 48 33 chr1 85292047 85292307 -196901357 + MER44D DNA MER2_type 350 605 0 1521 191 57 7 chr1 85293639 85293802 -196899862 - AluJo SINE Alu -15 297 113 252 0 0 0 chr1 85293802 85293830 -196899834 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1521 191 57 7 chr1 85293830 85293949 -196899715 - AluJo SINE Alu -199 113 1 2408 143 36 0 chr1 85294462 85294882 -196898782 - L1MA9 LINE L1 0 6312 5878 428 280 7 0 chr1 85295376 85295526 -196898138 + CT-rich Low_complexity Low_complexity 2 152 0 2784 130 0 0 chr1 85295773 85296188 -196897476 - L1PA15 LINE L1 -1 6164 5750 237 188 261 14 chr1 85296282 85296351 -196897313 + MIR SINE MIR 36 121 -141 501 255 205 32 chr1 85296438 85296818 -196896846 + LTR16A1 LTR ERVL 6 451 -6 1503 170 117 20 chr1 85296940 85297281 -196896383 + MLT1A2 LTR MaLR 1 374 0 21 36 0 0 chr1 85297464 85297492 -196896172 + AT_rich Low_complexity Low_complexity 1 28 0 4559 176 52 14 chr1 85299541 85300971 -196892693 - L1MB4 LINE L1 0 6180 4690 368 283 184 30 chr1 85301063 85301399 -196892265 + L2 LINE L2 2220 2607 -707 24 32 0 0 chr1 85303618 85303649 -196890015 + AT_rich Low_complexity Low_complexity 1 31 0 392 311 147 48 chr1 85303773 85304066 -196889598 - L3 LINE CR1 -2 1575 1254 37 23 0 0 chr1 85304115 85304159 -196889505 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 85304778 85304800 -196888864 + AT_rich Low_complexity Low_complexity 1 22 0 183 379 48 8 chr1 85305408 85305532 -196888132 - MIR SINE MIR -61 147 19 2408 69 13 0 chr1 85305540 85305843 -196887821 - AluSp SINE Alu -5 308 2 319 164 16 0 chr1 85307061 85307122 -196886542 - HsTC2 DNA Tc2 -1824 74 13 395 324 63 7 chr1 85307123 85307265 -196886399 - L3 LINE CR1 -3 1574 1425 6316 135 48 56 chr1 85307651 85308206 -196885458 + Tigger3b DNA MER2_type 1 559 -2469 853 136 0 0 chr1 85308206 85308324 -196885340 - FLAM_C SINE Alu -15 118 1 6316 135 48 56 chr1 85308324 85309008 -196884656 + Tigger3b DNA MER2_type 559 1230 -1 242 309 89 8 chr1 85309065 85309188 -196884476 - MIR3 SINE MIR -37 171 39 29 70 0 0 chr1 85310446 85310503 -196883161 + AT_rich Low_complexity Low_complexity 1 57 0 1729 175 0 30 chr1 85310661 85310987 -196882677 + AluJb SINE Alu 1 317 0 410 247 80 38 chr1 85311925 85312164 -196881500 - L1MEd LINE L1 -3784 2345 2097 21 0 0 0 chr1 85312617 85312638 -196881026 + AT_rich Low_complexity Low_complexity 1 21 0 1014 313 143 11 chr1 85312661 85313418 -196880246 + L2 LINE L2 2453 3313 0 256 259 0 0 chr1 85313472 85313526 -196880138 - L1MEd LINE L1 -4884 1235 1182 399 261 128 10 chr1 85313545 85313748 -196879916 - L1MEd LINE L1 -4996 1123 897 2238 102 0 14 chr1 85313842 85314137 -196879527 - AluSc SINE Alu -18 291 1 1919 151 7 0 chr1 85314212 85314503 -196879161 - AluSx SINE Alu -19 293 1 274 311 57 28 chr1 85314634 85314740 -196878924 - L1MEd LINE L1 -5450 669 561 292 324 182 17 chr1 85315186 85315362 -196878302 - MIR SINE MIR 0 262 58 578 310 33 14 chr1 85316239 85316452 -196877212 - MIR SINE MIR 0 262 46 914 237 56 0 chr1 85316799 85317014 -196876650 - L1PB4 LINE L1 -3 6153 5927 23 0 0 0 chr1 85318873 85318896 -196874768 + AT_rich Low_complexity Low_complexity 1 23 0 189 302 54 39 chr1 85319783 85319912 -196873752 - L2 LINE L2 -464 2850 2720 291 271 199 7 chr1 85321058 85321209 -196872455 - L1ME3A LINE L1 -28 6142 5963 212 184 0 0 chr1 85321722 85321760 -196871904 + T-rich Low_complexity Low_complexity 1 38 0 627 130 0 19 chr1 85321761 85321869 -196871795 + AluSg/x SINE Alu 162 267 -45 252 0 0 0 chr1 85321973 85322001 -196871663 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr1 85322227 85322248 -196871416 + AT_rich Low_complexity Low_complexity 1 21 0 285 286 41 103 chr1 85323258 85323674 -196869990 + L2 LINE L2 1830 3313 0 270 222 197 8 chr1 85323678 85323795 -196869869 - L1ME4a LINE L1 -28 6093 5955 338 258 102 8 chr1 85324356 85324484 -196869180 - L1ME4a LINE L1 -15 6106 5967 22 88 0 0 chr1 85324612 85324669 -196868995 + AT_rich Low_complexity Low_complexity 1 57 0 1566 200 30 13 chr1 85324802 85325107 -196868557 - AluJo SINE Alu -2 310 1 352 353 25 0 chr1 85325417 85325536 -196868128 + MIR3 SINE MIR 36 157 -51 1584 164 4 4 chr1 85326778 85327022 -196866642 - AluJb SINE Alu -66 246 3 690 212 27 0 chr1 85327151 85327297 -196866367 - L1MD2 LINE L1 -13 6346 6197 665 117 25 12 chr1 85327297 85327413 -196866251 + MSTB1 LTR MaLR 1 129 -246 1821 138 15 23 chr1 85327444 85327778 -196865886 + MSTB1 LTR MaLR 79 432 0 392 244 17 52 chr1 85327787 85327902 -196865762 - L1MD2 LINE L1 -167 6192 6082 4232 236 70 131 chr1 85329999 85332729 -196860935 - L2 LINE L2 -1 3312 757 4096 99 0 8 chr1 85333579 85334167 -196859497 - L1PA13 LINE L1 -1 6162 5580 419 241 139 80 chr1 85334260 85334497 -196859167 + MLT1J2 LTR MaLR 200 450 0 242 345 35 0 chr1 85334501 85334588 -196859076 + MIR3 SINE MIR 87 176 -32 299 291 28 0 chr1 85335035 85335169 -196858495 + L1MC/D LINE L1 5698 5832 -359 21 36 0 0 chr1 85335245 85335273 -196858391 + AT_rich Low_complexity Low_complexity 1 28 0 345 275 58 43 chr1 85335493 85335623 -196858041 + MIR SINE MIR 86 217 -45 282 370 16 32 chr1 85335623 85335812 -196857852 - MER5A DNA MER1_type -1 188 3 237 352 40 56 chr1 85337365 85337490 -196856174 + L2 LINE L2 3148 3270 -2 2094 119 0 0 chr1 85337631 85337926 -196855738 - AluSq SINE Alu -18 295 1 751 161 44 15 chr1 85338470 85338607 -196855057 + MER30 DNA MER1_type 90 230 0 1214 278 108 39 chr1 85338773 85339666 -196853998 + HAL1 LINE L1 812 1765 -742 324 218 58 11 chr1 85339674 85339761 -196853903 - MER53 DNA DNA -98 91 1 259 257 40 30 chr1 85339785 85339886 -196853778 + HAL1 LINE L1 1816 1917 -590 326 294 52 52 chr1 85340500 85340748 -196852916 + HAL1 LINE L1 2250 2497 -10 1913 227 10 7 chr1 85340932 85341338 -196852326 + L1 LINE L1 2 408 -6801 31575 107 14 51 chr1 85341345 85347732 -196845932 + L1PA7 LINE L1 12 6154 0 1198 248 8 4 chr1 85347740 85347986 -196845678 + L1 LINE L1 785 1031 -6178 3963 198 48 10 chr1 85348009 85348972 -196844692 + L1 LINE L1 3824 4822 -2386 1661 131 3 56 chr1 85348986 85349292 -196844372 + L1MA4A LINE L1 6001 6290 -13 315 0 0 0 chr1 85349906 85349941 -196843723 + (CA)n Simple_repeat Simple_repeat 2 36 0 311 307 22 44 chr1 85350084 85350221 -196843443 + MIR SINE MIR 50 183 -79 466 301 22 62 chr1 85350291 85350563 -196843101 - L2 LINE L2 -2 3311 3051 21 0 0 0 chr1 85350980 85351001 -196842663 + AT_rich Low_complexity Low_complexity 1 21 0 1655 131 12 84 chr1 85351128 85351448 -196842216 - AluJb SINE Alu -5 307 11 1016 296 42 42 chr1 85351543 85352161 -196841503 + L2 LINE L2 2681 3296 -17 652 279 116 44 chr1 85352167 85352878 -196840786 - L1ME4a LINE L1 -75 6046 5279 453 316 52 55 chr1 85353028 85353319 -196840345 - L1ME4a LINE L1 -1034 5112 4823 2081 134 39 25 chr1 85353402 85353760 -196839904 + THE1B LTR MaLR 1 363 -1 408 333 118 30 chr1 85353879 85354209 -196839455 + L1M4 LINE L1 4730 5088 -1058 430 272 15 0 chr1 85354267 85354403 -196839261 - L1ME4a LINE L1 -296 5825 5688 22 35 0 0 chr1 85354864 85354893 -196838771 + AT_rich Low_complexity Low_complexity 1 29 0 7922 163 15 32 chr1 85354893 85355087 -196838577 - L1PB2 LINE L1 -7 6144 5948 243 0 0 0 chr1 85355087 85355114 -196838550 + (TG)n Simple_repeat Simple_repeat 2 28 0 7922 163 15 32 chr1 85355114 85357602 -196836062 - L1PB2 LINE L1 -203 5948 3512 21 0 0 0 chr1 85358294 85358315 -196835349 + AT_rich Low_complexity Low_complexity 1 21 0 192 309 0 0 chr1 85360224 85360266 -196833398 + L2 LINE L2 3210 3251 -21 802 262 22 9 chr1 85360276 85360501 -196833163 - LTR16C LTR ERVL 0 491 264 508 325 35 31 chr1 85360841 85361096 -196832568 - MIR SINE MIR 0 262 7 1237 176 64 29 chr1 85361632 85361945 -196831719 + MER33 DNA MER1_type 1 324 0 1571 233 66 37 chr1 85362019 85362511 -196831153 - MER20B DNA MER1_type 0 783 270 2003 138 29 3 chr1 85362511 85362859 -196830805 - L1MA4 LINE L1 -9 6291 5935 1571 233 66 37 chr1 85362859 85362958 -196830706 - MER20B DNA MER1_type -513 270 175 1074 241 9 0 chr1 85362964 85363188 -196830476 + MLT1F1 LTR MaLR 339 564 -3 258 81 0 0 chr1 85363320 85363357 -196830307 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2268 120 28 0 chr1 85363357 85363702 -196829962 - L1PB1 LINE L1 -3 6148 5791 189 0 0 0 chr1 85363702 85363723 -196829941 + (TG)n Simple_repeat Simple_repeat 2 22 0 2268 120 28 0 chr1 85363723 85363734 -196829930 - L1PB1 LINE L1 -360 5791 5782 598 57 98 7 chr1 85363747 85364329 -196829335 + (TA)n Simple_repeat Simple_repeat 1 634 0 9559 179 16 17 chr1 85364333 85364401 -196829263 - L1PB1 LINE L1 -360 5791 5724 2445 134 3 16 chr1 85364401 85364781 -196828883 + THE1C LTR MaLR 1 375 0 9587 124 37 41 chr1 85364782 85366368 -196827296 + THE1C-int LTR MaLR 2 1580 0 2271 128 5 46 chr1 85366368 85366759 -196826905 + THE1C LTR MaLR 1 375 0 9559 179 16 17 chr1 85366759 85369559 -196824105 - L1PB1 LINE L1 -425 5726 2890 33211 94 7 27 chr1 85369667 85375517 -196818147 - L1PA6 LINE L1 -49 6105 377 368 283 184 30 chr1 85376568 85376904 -196816760 + L2 LINE L2 2220 2607 -707 7936 174 15 37 chr1 85378872 85381069 -196812595 - L1P5 LINE L1 -495 5656 3512 21 0 0 0 chr1 85381761 85381782 -196811882 + AT_rich Low_complexity Low_complexity 1 21 0 192 309 0 0 chr1 85383691 85383733 -196809931 + L2 LINE L2 3210 3251 -21 792 267 22 9 chr1 85383743 85383968 -196809696 - LTR16C LTR ERVL 0 491 264 508 325 35 31 chr1 85384308 85384563 -196809101 - MIR SINE MIR 0 262 7 1231 171 63 38 chr1 85385099 85385415 -196808249 + MER33 DNA MER1_type 1 324 0 1571 233 66 37 chr1 85385489 85385981 -196807683 - MER20B DNA MER1_type 0 783 270 2003 138 29 3 chr1 85385981 85386329 -196807335 - L1MA4 LINE L1 -9 6291 5935 1571 233 66 37 chr1 85386329 85386428 -196807236 - MER20B DNA MER1_type -513 270 175 1090 237 9 0 chr1 85386434 85386658 -196807006 + MLT1F1 LTR MaLR 339 564 -3 258 81 0 0 chr1 85386790 85386827 -196806837 + (TATG)n Simple_repeat Simple_repeat 2 38 0 2268 120 23 0 chr1 85386827 85387177 -196806487 - L1PB1 LINE L1 -3 6864 6507 610 51 92 10 chr1 85387192 85387588 -196806076 + (TA)n Simple_repeat Simple_repeat 1 428 0 13723 202 37 13 chr1 85387592 85387660 -196806004 - L1PB1 LINE L1 -360 6507 6442 2431 137 3 16 chr1 85387660 85388040 -196805624 + THE1C LTR MaLR 1 375 0 9544 124 36 44 chr1 85388041 85389632 -196804032 + THE1C-int LTR MaLR 2 1580 0 2271 128 5 46 chr1 85389632 85390023 -196803641 + THE1C LTR MaLR 1 375 0 13723 202 37 13 chr1 85390023 85395013 -196798651 - L1PB1 LINE L1 -424 6443 1311 940 128 74 0 chr1 85395015 85395164 -196798500 - L1PB1 LINE L1 -5708 1155 996 1281 297 141 21 chr1 85395693 85396671 -196796993 + HERVL LTR ERVL 2414 3522 -1963 523 276 70 25 chr1 85396919 85397284 -196796380 + HERVL LTR ERVL 3838 4292 -1234 1307 261 112 28 chr1 85397401 85397873 -196795791 - LTR33 LTR ERVL -9 512 1 507 286 108 83 chr1 85398425 85398828 -196794836 - L2 LINE L2 -1 3271 2854 2569 52 0 7 chr1 85398828 85399137 -196794527 + AluY SINE Alu 1 307 -4 507 286 108 83 chr1 85399137 85399266 -196794398 - L2 LINE L2 -418 2854 2730 297 259 0 0 chr1 85399976 85400030 -196793634 + MIR SINE MIR 1 54 -208 24 53 0 0 chr1 85401036 85401074 -196792590 + AT_rich Low_complexity Low_complexity 1 38 0 3046 187 32 82 chr1 85401402 85402296 -196791368 + L1MA6 LINE L1 5464 6177 -1 21 36 0 0 chr1 85402296 85402324 -196791340 + AT_rich Low_complexity Low_complexity 1 28 0 494 250 7 1 chr1 85403323 85403436 -196790228 - MLT1G LTR MaLR -448 119 3 195 42 0 0 chr1 85403455 85403479 -196790185 + (T)n Simple_repeat Simple_repeat 1 24 0 243 296 20 10 chr1 85403803 85403901 -196789763 - MLT1F-int LTR MaLR -1269 102 4 439 238 113 14 chr1 85403912 85404182 -196789482 - MLT1F LTR MaLR -8 534 176 22 56 0 0 chr1 85404351 85404387 -196789277 + AT_rich Low_complexity Low_complexity 1 36 0 1623 190 0 3 chr1 85404391 85404675 -196788989 - AluJb SINE Alu -21 291 9 211 28 56 0 chr1 85405045 85405081 -196788583 + (CAA)n Simple_repeat Simple_repeat 2 39 0 22 70 0 0 chr1 85405850 85405893 -196787771 + AT_rich Low_complexity Low_complexity 1 43 0 408 210 140 0 chr1 85405970 85406070 -196787594 - MIR SINE MIR -63 199 86 25 0 0 0 chr1 85406230 85406255 -196787409 + AT_rich Low_complexity Low_complexity 1 25 0 2275 105 0 22 chr1 85406827 85407140 -196786524 + AluSc SINE Alu 1 306 -3 264 30 0 0 chr1 85409203 85409236 -196784428 + (T)n Simple_repeat Simple_repeat 1 33 0 2907 158 19 43 chr1 85409599 85410162 -196783502 - MER44D DNA MER2_type 0 605 1 2328 102 0 0 chr1 85410329 85410632 -196783032 - AluSg SINE Alu -6 304 2 1094 120 55 11 chr1 85410882 85411065 -196782599 + L1PA6 LINE L1 5960 6150 -4 288 0 0 0 chr1 85411393 85411425 -196782239 + (TG)n Simple_repeat Simple_repeat 2 33 0 438 306 0 0 chr1 85412770 85412881 -196780783 - MER94 DNA DNA 0 134 24 226 157 118 0 chr1 85412899 85412950 -196780714 + L2 LINE L2 2992 3048 -224 1286 219 49 12 chr1 85413041 85413370 -196780294 + MER58B DNA MER1_type 1 341 0 2607 35 0 13 chr1 85413824 85414137 -196779527 - AluY SINE Alu -2 309 1 21 36 0 0 chr1 85416035 85416063 -196777601 + AT_rich Low_complexity Low_complexity 1 28 0 380 313 7 0 chr1 85416082 85416226 -196777438 + L1ME LINE L1 5598 5742 -379 1277 222 67 7 chr1 85416266 85416536 -196777128 + AluJo SINE Alu 6 291 -21 25 0 0 0 chr1 85416542 85416567 -196777097 + AT_rich Low_complexity Low_complexity 1 25 0 423 290 74 32 chr1 85417224 85417593 -196776071 - MLT1L LTR MaLR 0 615 195 29 60 0 0 chr1 85418094 85418144 -196775520 + AT_rich Low_complexity Low_complexity 1 50 0 2397 87 0 0 chr1 85418216 85418516 -196775148 - AluSx SINE Alu -12 300 1 508 308 177 36 chr1 85418702 85419052 -196774612 - L2 LINE L2 -21 3292 2880 2143 125 22 35 chr1 85419052 85419421 -196774243 + THE1B LTR MaLR 1 364 0 508 308 177 36 chr1 85419421 85419460 -196774204 - L2 LINE L2 -433 2880 2848 1073 198 146 73 chr1 85419461 85419830 -196773834 + MSTD LTR MaLR 1 396 0 206 339 217 18 chr1 85422572 85423250 -196770414 + L2 LINE L2 1983 2795 -519 325 157 14 14 chr1 85423342 85423412 -196770252 + MER116 DNA Mariner 7 76 -4 266 356 142 39 chr1 85423506 85423739 -196769925 + L2 LINE L2 3016 3272 0 1638 207 19 11 chr1 85424690 85425057 -196768607 - MLT1A2 LTR MaLR 0 374 5 1459 201 4 4 chr1 85425194 85425457 -196768207 + AluJo SINE Alu 1 263 -49 540 0 0 0 chr1 85425470 85425530 -196768134 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 22 56 0 0 chr1 85426574 85426610 -196767054 + AT_rich Low_complexity Low_complexity 1 36 0 459 136 0 0 chr1 85428291 85428357 -196765307 - MLT1A1-int LTR MaLR -1301 70 5 1530 202 50 15 chr1 85428370 85428546 -196765118 - MLT1A1 LTR MaLR -11 354 186 279 0 0 0 chr1 85428546 85428577 -196765087 + (GA)n Simple_repeat Simple_repeat 2 32 0 1530 202 50 15 chr1 85428577 85428742 -196764922 - MLT1A1 LTR MaLR -179 186 1 1948 139 11 3 chr1 85429127 85429414 -196764250 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr1 85429809 85429836 -196763828 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 367 349 24 32 chr1 85429881 85430036 -196763628 + MIR3 SINE MIR 20 174 -34 5557 12 0 18 chr1 85430036 85430687 -196762977 - L1PA3 LINE L1 0 6155 5517 354 256 143 15 chr1 85432037 85432170 -196761494 - L2 LINE L2 -5 3308 3159 1489 144 91 21 chr1 85432556 85432841 -196760823 + MER44D DNA MER2_type 1 575 -34 1218 90 58 5 chr1 85432866 85433054 -196760610 - Tigger4(Zombi) DNA MER2_type -3 2728 2531 642 176 9 0 chr1 85433062 85433170 -196760494 - Tigger4(Zombi) DNA MER2_type -2613 118 10 252 0 0 0 chr1 85433184 85433212 -196760452 + (TG)n Simple_repeat Simple_repeat 2 29 0 213 122 41 20 chr1 85433221 85433270 -196760394 + (TA)n Simple_repeat Simple_repeat 1 50 0 1029 165 11 0 chr1 85436050 85436226 -196757438 + L1PA15 LINE L1 5980 6157 -8 366 222 157 60 chr1 85436243 85436428 -196757236 + LTR16A LTR ERVL 248 450 0 190 396 44 0 chr1 85436445 85436536 -196757128 + L2 LINE L2 2962 3056 -216 225 273 23 0 chr1 85437187 85437275 -196756389 - L1MC4 LINE L1 -1339 6703 6614 2267 309 121 43 chr1 85437353 85439206 -196754458 + L2 LINE L2 1288 3288 -25 615 256 32 13 chr1 85439691 85439847 -196753817 + L3 LINE CR1 1418 1576 -1 409 323 40 16 chr1 85440648 85440772 -196752892 - L2 LINE L2 -9 3263 3137 837 321 109 15 chr1 85440972 85441383 -196752281 + L2 LINE L2 2864 3313 0 388 353 85 36 chr1 85441457 85441820 -196751844 - L2 LINE L2 -657 2657 2277 249 303 120 48 chr1 85442110 85442318 -196751346 + L2 LINE L2 2715 2937 -377 2046 122 7 0 chr1 85443254 85443540 -196750124 - AluSx SINE Alu -24 288 1 21 0 0 0 chr1 85445515 85445536 -196748128 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 85446758 85446783 -196746881 + AT_rich Low_complexity Low_complexity 1 25 0 1370 191 74 4 chr1 85448305 85448561 -196745103 + AluSx SINE Alu 1 274 -38 409 146 36 18 chr1 85448565 85448675 -196744989 + GA-rich Low_complexity Low_complexity 1 112 0 304 355 0 9 chr1 85448962 85449072 -196744592 + MER5A DNA MER1_type 80 188 -1 193 200 120 0 chr1 85449320 85449370 -196744294 - MIR SINE MIR -10 252 197 549 262 21 28 chr1 85449513 85449658 -196744006 - MIR SINE MIR -106 156 13 23 0 0 0 chr1 85450251 85450274 -196743390 + AT_rich Low_complexity Low_complexity 1 23 0 331 267 34 103 chr1 85451440 85451456 -196742208 + L2 LINE L2 3122 3138 -134 2214 175 51 59 chr1 85451456 85451965 -196741699 + MLT1D LTR MaLR 1 505 0 331 267 34 103 chr1 85451965 85452094 -196741570 + L2 LINE L2 3138 3257 -15 336 354 27 20 chr1 85452355 85452502 -196741162 + MIR SINE MIR 3 150 -112 221 57 29 0 chr1 85454705 85454740 -196738924 + (GA)n Simple_repeat Simple_repeat 1 36 0 237 33 0 0 chr1 85454769 85454799 -196738865 + (TG)n Simple_repeat Simple_repeat 2 31 0 371 21 21 0 chr1 85455221 85455269 -196738395 + (TC)n Simple_repeat Simple_repeat 2 50 0 559 226 63 118 chr1 85455764 85456157 -196737507 + L1ME LINE L1 985 1345 -5071 1794 141 48 10 chr1 85456157 85456447 -196737217 + AluSx SINE Alu 1 301 -11 559 226 63 118 chr1 85456447 85456561 -196737103 + L1ME LINE L1 1345 1464 -4952 362 243 92 35 chr1 85456558 85456731 -196736933 + L1ME LINE L1 1687 1915 -4557 * 955 164 32 196 chr1 85457115 85457549 -196736115 + MLT1A1 LTR MaLR 1 363 -2 537 242 89 65 chr1 85457575 85457704 -196735960 + L1ME LINE L1 2420 2544 -3882 2134 136 0 3 chr1 85457704 85458013 -196735651 + AluSg SINE Alu 3 310 0 537 242 89 65 chr1 85458013 85458120 -196735544 + L1ME LINE L1 2544 2647 -3779 548 65 26 0 chr1 85458120 85458197 -196735467 - MADE1 DNA Mariner 0 80 2 537 242 89 65 chr1 85458197 85458406 -196735258 + L1ME LINE L1 2647 2877 -3549 281 246 45 37 chr1 85458414 85458548 -196735116 + L1ME LINE L1 5179 5313 -1113 189 0 0 0 chr1 85458955 85458976 -196734688 + (GA)n Simple_repeat Simple_repeat 2 22 0 1448 132 22 0 chr1 85459283 85459511 -196734153 - L1PA11 LINE L1 -1 6173 5941 1092 284 105 4 chr1 85459541 85460006 -196733658 + L1ME LINE L1 5578 6089 -361 234 200 200 0 chr1 85460107 85460187 -196733477 - L1ME3A LINE L1 -224 5946 5851 615 154 19 103 chr1 85460483 85460639 -196733025 + L2 LINE L2 3171 3313 0 2757 50 6 0 chr1 85461441 85461783 -196731881 + LTR14A LTR ERVK 1 344 0 221 370 63 11 chr1 85462388 85462568 -196731096 + MIR SINE MIR 16 206 -56 6411 130 70 29 chr1 85462674 85463031 -196730633 + Tigger3b DNA MER2_type 2 343 -2685 2073 119 10 3 chr1 85463031 85463325 -196730339 + AluSx SINE Alu 10 305 -7 6411 130 70 29 chr1 85463325 85464144 -196729520 + Tigger3b DNA MER2_type 343 1226 -5 260 53 26 0 chr1 85465097 85465135 -196728529 + (CA)n Simple_repeat Simple_repeat 2 40 0 1342 158 53 0 chr1 85465521 85465787 -196727877 - L1MA9 LINE L1 0 6312 6033 12070 201 44 35 chr1 85465803 85466316 -196727348 - L1MA7 LINE L1 -2 7708 7201 2021 138 3 22 chr1 85466316 85466634 -196727030 - AluJb SINE Alu 0 312 1 12070 201 44 35 chr1 85466634 85467432 -196726232 - L1MA7 LINE L1 -509 7201 6411 804 153 0 8 chr1 85467432 85467563 -196726101 - FLAM_C SINE Alu -3 130 1 12070 201 44 35 chr1 85467563 85471278 -196722386 - L1MA7 LINE L1 -1299 6411 2634 2676 118 34 7 chr1 85471278 85471695 -196721969 - MSTA LTR MaLR 0 428 1 12070 201 44 35 chr1 85471695 85472076 -196721588 - L1MA7 LINE L1 -5076 2634 2258 295 189 54 81 chr1 85472075 85472223 -196721441 - L1M1 LINE L1 -3963 3602 3459 * 2342 111 0 0 chr1 85472256 85472589 -196721075 - L1PA12 LINE L1 -1 6167 5835 1695 75 13 0 chr1 85472589 85472828 -196720836 + L1PA12 LINE L1 5597 5838 -325 4038 266 40 13 chr1 85472868 85475046 -196718618 - L1M4c LINE L1 -4144 1892 1 757 274 6 6 chr1 85475353 85475532 -196718132 + MER8 DNA MER2_type 1 179 -60 284 313 0 0 chr1 85475507 85475571 -196718093 + MER2 DNA MER2_type 282 345 0 * 230 0 33 0 chr1 85475734 85475764 -196717900 + (CA)n Simple_repeat Simple_repeat 1 31 0 1719 179 0 17 chr1 85476102 85476403 -196717261 - AluJo SINE Alu -16 296 1 30 69 0 0 chr1 85476751 85476809 -196716855 + AT_rich Low_complexity Low_complexity 1 58 0 21 36 0 0 chr1 85476828 85476856 -196716808 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr1 85478289 85478336 -196715328 + AT_rich Low_complexity Low_complexity 1 47 0 644 238 54 16 chr1 85478359 85478544 -196715120 + MIR SINE MIR 71 262 0 2207 129 0 0 chr1 85479000 85479303 -196714361 + AluSx SINE Alu 1 303 -9 927 341 19 49 chr1 85480215 85480843 -196712821 + L1PA16 LINE L1 2 610 -6177 338 321 6 19 chr1 85480841 85481000 -196712664 + L1PA16 LINE L1 1363 1519 -5268 * 3608 239 36 5 chr1 85481854 85482899 -196710765 + L1PA16 LINE L1 1510 2612 -4185 40162 37 23 2 chr1 85482901 85484153 -196709511 + L1PA2 LINE L1 4 1228 -4927 8327 54 1 0 chr1 85484153 85485118 -196708546 + LTR5 LTR ERVK 1 966 -3 40162 37 23 2 chr1 85485118 85489916 -196703748 + L1PA2 LINE L1 1228 6155 0 10747 200 22 43 chr1 85489934 85490174 -196703490 + L1PA16 LINE L1 2589 2832 -3985 2416 64 3 0 chr1 85490174 85490471 -196703193 + AluY SINE Alu 7 304 -7 10747 200 22 43 chr1 85490471 85493541 -196700123 + L1PA16 LINE L1 2832 5777 -1040 1701 183 21 7 chr1 85493541 85493830 -196699834 + AluJo SINE Alu 1 293 -19 10747 200 22 43 chr1 85493830 85494842 -196698822 + L1PA16 LINE L1 5777 6808 -9 200 216 0 0 chr1 85495020 85495057 -196698607 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 303 377 19 0 chr1 85495400 85495554 -196698110 - L2 LINE L2 -609 2705 2549 1088 283 119 21 chr1 85495576 85496088 -196697576 - L2 LINE L2 -992 2322 1761 228 259 155 9 chr1 85496150 85496266 -196697398 - L2 LINE L2 -1689 1625 1493 669 105 0 35 chr1 85497327 85497441 -196696223 - L1MA7 LINE L1 -7 6284 6175 444 164 0 0 chr1 85497445 85497534 -196696130 + L1MA7 LINE L1 6078 6155 -136 541 235 148 0 chr1 85497647 85497806 -196695858 - MER5A DNA MER1_type 0 189 4 654 248 67 75 chr1 85499222 85499476 -196694188 - MIR SINE MIR 0 262 11 210 304 104 22 chr1 85500114 85500249 -196693415 - MIR SINE MIR -34 228 83 358 313 133 44 chr1 85501004 85501303 -196692361 + L1MC4a LINE L1 7331 7655 -153 2274 200 4 10 chr1 85501522 85502003 -196691661 + L1PA16 LINE L1 5664 6141 -25 27 0 0 0 chr1 85502030 85502057 -196691607 + AT_rich Low_complexity Low_complexity 1 27 0 698 335 119 34 chr1 85502902 85503314 -196690350 - L2 LINE L2 0 3272 2826 200 290 160 10 chr1 85503898 85503998 -196689666 + MIR SINE MIR 35 149 -59 29830 109 8 59 chr1 85504064 85510531 -196683133 + L1PA7 LINE L1 12 6146 -8 1207 135 113 0 chr1 85510671 85510900 -196682764 + L1PA16 LINE L1 5801 6055 -111 386 230 0 0 chr1 85510998 85511085 -196682579 + L1PA16 LINE L1 6057 6143 -23 49 52 0 0 chr1 85511270 85511347 -196682317 + AT_rich Low_complexity Low_complexity 1 77 0 211 118 0 39 chr1 85511580 85511631 -196682033 + (CATA)n Simple_repeat Simple_repeat 3 51 0 380 280 64 16 chr1 85512494 85512619 -196681045 - L2 LINE L2 -1 3271 3141 373 247 52 21 chr1 85513853 85513950 -196679714 + L2 LINE L2 3172 3271 -1 364 224 61 0 chr1 85514045 85514143 -196679521 - MER117 DNA MER1_type -42 155 52 3758 183 18 3 chr1 85514271 85514953 -196678711 + MER44D DNA MER2_type 1 692 -13 498 170 0 0 chr1 85515937 85516031 -196677633 + (CATA)n Simple_repeat Simple_repeat 3 96 0 931 309 71 46 chr1 85516078 85516782 -196676882 - L2 LINE L2 0 3272 2552 2077 146 25 22 chr1 85516825 85517188 -196676476 + THE1B LTR MaLR 1 364 0 10996 98 6 3 chr1 85517188 85518754 -196674910 + THE1B-int LTR MaLR 1 1571 -9 2190 143 19 22 chr1 85518758 85519122 -196674542 + THE1B LTR MaLR 2 364 0 295 316 124 50 chr1 85519138 85519534 -196674130 - L2 LINE L2 -821 2493 2069 616 294 144 51 chr1 85519898 85520456 -196673208 - L2 LINE L2 -3 3310 2692 709 302 120 7 chr1 85520499 85520790 -196672874 + L1MEc LINE L1 202 525 -6038 2210 257 74 40 chr1 85520801 85521602 -196672062 + L1MEc LINE L1 1236 2243 -4320 2160 165 8 6 chr1 85521602 85521966 -196671698 + MLT1A1 LTR MaLR 1 365 0 2210 257 74 40 chr1 85521966 85522253 -196671411 + L1MEc LINE L1 2243 2519 -4044 220 338 33 73 chr1 85523950 85524101 -196669563 + L2 LINE L2 3127 3271 -1 263 316 56 26 chr1 85524391 85524534 -196669130 - MIR SINE MIR -78 130 12 207 0 0 0 chr1 85525964 85525987 -196667677 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1872 111 4 4 chr1 85525989 85526242 -196667422 - AluSx SINE Alu -24 288 36 203 267 33 17 chr1 85528068 85528128 -196665536 + MER5B DNA MER1_type 76 136 -42 765 272 61 92 chr1 85528235 85528809 -196664855 + LTR67 LTR ERVL 2 557 0 696 233 138 9 chr1 85529268 85529500 -196664164 + MIR SINE MIR 1 262 0 900 251 125 18 chr1 85529566 85529901 -196663763 + MLT1I LTR MaLR 39 409 0 285 327 44 18 chr1 85530071 85530184 -196663480 + L2 LINE L2 3156 3271 -1 351 319 47 35 chr1 85530429 85530598 -196663066 - MIR3 SINE MIR -3 205 35 266 324 46 19 chr1 85530674 85530782 -196662882 - MER5B DNA MER1_type 0 178 68 294 292 97 0 chr1 85531161 85531190 -196662474 - L2 LINE L2 -4 3309 3284 2001 139 98 25 chr1 85531190 85531586 -196662078 - MSTB LTR MaLR -1 425 1 294 292 97 0 chr1 85531586 85531669 -196661995 - L2 LINE L2 -29 3284 3186 1258 169 45 124 chr1 85531728 85532124 -196661540 + MLT1A1 LTR MaLR 1 365 0 347 252 89 24 chr1 85532291 85532414 -196661250 - MER5A DNA MER1_type -4 185 55 550 352 90 63 chr1 85534616 85535417 -196658247 + L2 LINE L2 1534 2375 -939 2059 147 33 22 chr1 85535417 85535777 -196657887 - THE1B LTR MaLR 0 364 1 550 352 90 63 chr1 85535777 85536086 -196657578 + L2 LINE L2 2375 2674 -640 221 314 52 57 chr1 85536190 85536419 -196657245 + L2 LINE L2 2685 2912 -402 258 105 0 0 chr1 85537531 85537569 -196656095 + (CA)n Simple_repeat Simple_repeat 1 38 0 5739 140 30 18 chr1 85538070 85539090 -196654574 - Tigger3b DNA MER2_type -198 1033 1 581 206 131 25 chr1 85539823 85539983 -196653681 - L2 LINE L2 -1314 2000 1824 322 308 116 18 chr1 85540339 85540563 -196653101 + L1MEd LINE L1 561 806 -5313 1580 212 45 25 chr1 85540655 85541036 -196652628 + MSTD LTR MaLR 1 425 -3 268 234 31 70 chr1 85541045 85541109 -196652555 + L1MEd LINE L1 895 953 -5166 718 197 8 0 chr1 85541109 85541236 -196652428 + FLAM_A SINE Alu 2 129 -4 268 234 31 70 chr1 85541236 85541299 -196652365 + L1MEd LINE L1 953 1017 -5102 8147 153 20 7 chr1 85541399 85541591 -196652073 + L1MA2 LINE L1 3796 3984 -2320 2264 111 0 3 chr1 85541591 85541898 -196651766 + AluSg SINE Alu 1 306 -4 8147 153 20 7 chr1 85541898 85543837 -196649827 + L1MA2 LINE L1 3984 5946 -358 965 312 72 22 chr1 85543982 85544611 -196649053 - L2 LINE L2 -82 3231 2572 225 151 41 27 chr1 85544789 85544862 -196648802 + (TAA)n Simple_repeat Simple_repeat 3 76 0 22 0 0 0 chr1 85544985 85545007 -196648657 + AT_rich Low_complexity Low_complexity 1 22 0 528 246 39 56 chr1 85545115 85545294 -196648370 - MER20B DNA MER1_type -607 176 1 21 71 0 0 chr1 85545412 85545454 -196648210 + AT_rich Low_complexity Low_complexity 1 42 0 220 274 39 69 chr1 85545889 85545991 -196647673 - MIR SINE MIR -5 257 159 429 146 218 9 chr1 85546133 85546243 -196647421 - MER31A LTR ERV1 0 485 353 1512 193 67 80 chr1 85546244 85546706 -196646958 + MER31B LTR ERV1 1 456 -10 847 268 138 33 chr1 85546827 85546961 -196646703 + L1M4 LINE L1 2870 2989 -3157 303 213 12 12 chr1 85546961 85547041 -196646623 - MER116 DNA Mariner 0 80 1 847 268 138 33 chr1 85547041 85547691 -196645973 + L1M4 LINE L1 2989 3736 -2410 2140 138 7 0 chr1 85547911 85548216 -196645448 + AluSx SINE Alu 1 307 -5 408 155 0 0 chr1 85548216 85548287 -196645377 + GA-rich Low_complexity Low_complexity 1 71 0 247 158 0 0 chr1 85548287 85548325 -196645339 + polypurine Low_complexity Low_complexity 1 38 0 3951 36 2 0 chr1 85548437 85548884 -196644780 - LTR5 LTR ERVK -521 448 1 410 69 10 167 chr1 85548884 85548979 -196644685 - SVA Other Other -449 937 857 16254 10 0 0 chr1 85548979 85550793 -196642871 - HERVK LTR ERVK -95 7148 5335 * 22048 23 0 1 chr1 85550777 85553320 -196640344 - HERVK LTR ERVK -4701 2542 1 8243 53 1 0 chr1 85553323 85554288 -196639376 - LTR5 LTR ERVK -3 966 1 3630 85 12 0 chr1 85554288 85554829 -196638835 - L1P LINE L1 -4751 1395 720 14596 151 45 16 chr1 85554974 85556893 -196636771 - L1 LINE L1 -2362 5203 3342 2278 122 0 0 chr1 85556893 85557204 -196636460 - AluY SINE Alu 0 311 1 14596 151 45 16 chr1 85557204 85557702 -196635962 - L1 LINE L1 -4223 3342 2860 2552 56 3 0 chr1 85557702 85558005 -196635659 - AluY SINE Alu -7 304 1 14596 151 45 16 chr1 85558005 85559501 -196634163 - L1 LINE L1 -4705 2860 1175 195 228 18 18 chr1 85559722 85559779 -196633885 + MIR SINE MIR 147 203 -59 401 281 46 20 chr1 85559974 85560170 -196633494 - L1ME4a LINE L1 -253 5868 5668 478 158 146 0 chr1 85561226 85561308 -196632356 + FLAM_A SINE Alu 21 114 -28 251 289 35 26 chr1 85561491 85561605 -196632059 + MIR SINE MIR 50 164 -98 642 251 37 16 chr1 85561848 85562035 -196631629 + L1ME1 LINE L1 5967 6157 -9 329 313 214 5 chr1 85562295 85562496 -196631168 + L2 LINE L2 2162 2404 -910 292 284 119 0 chr1 85562492 85562601 -196631063 - L2 LINE L2 -2 3311 3190 * 418 348 118 56 chr1 85563027 85563401 -196630263 + L2 LINE L2 2830 3226 -46 223 317 89 72 chr1 85563400 85563482 -196630182 + L2 LINE L2 2795 2874 -440 * 2175 112 3 0 chr1 85563482 85563777 -196629887 - AluSx SINE Alu -16 296 1 223 317 89 72 chr1 85563777 85563874 -196629790 + L2 LINE L2 2874 2977 -337 13917 223 24 18 chr1 85564837 85569395 -196624269 - L1PA16 LINE L1 -6 6863 2172 292 29 0 0 chr1 85569395 85569429 -196624235 + U2 snRNA snRNA 1 34 -154 13917 223 24 18 chr1 85569429 85569688 -196623976 - L1PA16 LINE L1 -4697 2172 1916 9401 180 72 15 chr1 85569693 85571342 -196622322 - L1PA16 LINE L1 -5037 1812 59 2223 96 0 0 chr1 85571342 85571622 -196622042 - AluSc SINE Alu -19 290 11 9401 180 72 15 chr1 85571622 85571685 -196621979 - L1PA16 LINE L1 -6790 59 1 859 318 63 46 chr1 85572217 85572794 -196620870 - L2 LINE L2 -194 3078 2483 204 233 0 0 chr1 85573250 85573293 -196620371 - L2 LINE L2 -879 2435 2393 32 26 0 0 chr1 85573317 85573356 -196620308 + AT_rich Low_complexity Low_complexity 1 39 0 219 321 107 27 chr1 85573440 85573552 -196620112 - L3 LINE CR1 -1043 534 414 330 26 0 0 chr1 85574664 85574703 -196618961 + (TG)n Simple_repeat Simple_repeat 2 40 0 2344 299 119 2 chr1 85574706 85575780 -196617884 - L2 LINE L2 -41 3272 2079 202 153 34 34 chr1 85575811 85575870 -196617794 + (TTATA)n Simple_repeat Simple_repeat 5 63 0 2253 163 60 0 chr1 85575892 85576292 -196617372 - MSTB LTR MaLR -2 424 1 1049 286 45 63 chr1 85576340 85576847 -196616817 + L2 LINE L2 1269 1766 -1548 423 15 76 0 chr1 85576847 85576913 -196616751 + CT-rich Low_complexity Low_complexity 4 74 0 1070 123 0 6 chr1 85577016 85577187 -196616477 + L1MA2 LINE L1 6135 6304 0 1494 156 16 44 chr1 85577206 85577521 -196616143 - MER33 DNA MER1_type -18 306 1 1540 178 77 0 chr1 85577848 85578134 -196615530 + AluJo SINE Alu 3 310 -2 208 301 78 103 chr1 85578666 85579114 -196614550 - L2 LINE L2 -105 3167 2731 336 48 0 0 chr1 85579592 85579634 -196614030 + (CA)n Simple_repeat Simple_repeat 2 43 0 285 373 42 23 chr1 85579948 85580165 -196613499 - L3b LINE CR1 -223 1360 1140 621 293 12 6 chr1 85583946 85584110 -196609554 + MIR SINE MIR 2 166 -96 2178 117 0 0 chr1 85584112 85584402 -196609262 + AluSg SINE Alu 1 290 -20 44155 41 1 4 chr1 85584471 85590639 -196603025 + L1PA3 LINE L1 2 6152 -3 313 275 12 12 chr1 85590763 85590843 -196602821 + MIR3 SINE MIR 111 190 -18 195 217 43 0 chr1 85591236 85591282 -196602382 - L2 LINE L2 0 3272 3225 226 94 0 0 chr1 85591891 85591923 -196601741 + MIR3 SINE MIR 139 170 -38 1884 119 175 22 chr1 85591931 85592302 -196601362 - MSTA LTR MaLR 0 428 1 9083 138 26 36 chr1 85592302 85593895 -196599769 - MSTA-int LTR MaLR 0 1580 3 1720 133 193 17 chr1 85593900 85594262 -196599402 - MSTA LTR MaLR -2 426 1 1159 109 0 23 chr1 85594824 85594999 -196598665 - MSTA-int LTR MaLR -214 1366 1196 395 327 104 58 chr1 85595347 85595674 -196597990 - L2 LINE L2 -93 3220 2879 1659 184 41 29 chr1 85595859 85596000 -196597664 - MER7A DNA MER2_type -2694 344 206 3564 140 8 0 chr1 85596000 85596523 -196597141 + MER1A DNA MER1_type 1 527 0 1659 184 41 29 chr1 85596523 85596723 -196596941 - MER7A DNA MER2_type -2832 206 1 24 32 0 0 chr1 85596883 85596914 -196596750 + AT_rich Low_complexity Low_complexity 1 31 0 2120 99 4 0 chr1 85597068 85597340 -196596324 - AluSp SINE Alu -24 289 17 201 147 0 0 chr1 85597681 85597715 -196595949 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 24 53 0 0 chr1 85598240 85598278 -196595386 + AT_rich Low_complexity Low_complexity 1 38 0 1009 277 182 14 chr1 85599191 85599674 -196593990 + MLT1L LTR MaLR 36 599 -16 291 140 0 0 chr1 85599910 85599960 -196593704 + (CA)n Simple_repeat Simple_repeat 1 50 0 339 260 77 19 chr1 85600572 85600676 -196592988 + L2 LINE L2 3204 3313 0 183 351 35 0 chr1 85600707 85600764 -196592900 - L2 LINE L2 -78 3194 3136 284 346 101 24 chr1 85601078 85601454 -196592210 + MLT1K LTR MaLR 184 588 0 285 261 0 11 chr1 85601602 85601694 -196591970 + L1M4 LINE L1 2440 2530 -3616 338 245 88 48 chr1 85601770 85601917 -196591747 + HAL1 LINE L1 1512 1664 -843 422 313 12 6 chr1 85601940 85602103 -196591561 + L1M3d LINE L1 767 930 -5723 385 271 42 34 chr1 85602102 85602220 -196591444 + L1M3d LINE L1 846 964 -5689 * 1043 180 119 8 chr1 85602222 85602523 -196591141 + MSTD LTR MaLR 1 396 0 1791 232 130 51 chr1 85602526 85603381 -196590283 + L1MA9 LINE L1 216 1002 -5651 2407 95 0 0 chr1 85603381 85603687 -196589977 + AluY SINE Alu 1 306 -5 1791 232 130 51 chr1 85603687 85603962 -196589702 + L1MA9 LINE L1 1002 1998 -4655 21 0 0 0 chr1 85603993 85604014 -196589650 + AT_rich Low_complexity Low_complexity 1 21 0 1622 113 4 0 chr1 85604014 85604261 -196589403 - L1MA2 LINE L1 0 6304 6057 5372 176 13 25 chr1 85604265 85605983 -196587681 + L1MA9 LINE L1 5174 6868 -30 1805 177 29 37 chr1 85607114 85607376 -196586288 + MER7A DNA MER2_type 2 260 -2778 2172 131 0 37 chr1 85607376 85607726 -196585938 - MER1B DNA MER1_type 0 337 1 1805 177 29 37 chr1 85607726 85607813 -196585851 + MER7A DNA MER2_type 260 346 0 775 259 34 25 chr1 85608013 85608298 -196585366 + MLT1J1 LTR MaLR 1 323 -123 237 197 61 15 chr1 85608363 85608429 -196585235 + MLT1J1 LTR MaLR 358 426 -20 358 248 79 103 chr1 85608660 85608874 -196584790 + MLT1J1 LTR MaLR 238 446 0 427 361 46 33 chr1 85609010 85609251 -196584413 + MIR SINE MIR 2 245 -17 197 180 20 0 chr1 85610385 85610435 -196583229 + (CA)n Simple_repeat Simple_repeat 2 52 0 1414 41 0 0 chr1 85610764 85610936 -196582728 - L1PA4 LINE L1 -3 6152 5981 248 282 69 21 chr1 85611069 85611233 -196582431 + MIR SINE MIR 29 201 -61 1567 149 162 16 chr1 85611531 85611840 -196581824 + MSTA LTR MaLR 75 428 0 618 233 73 39 chr1 85612456 85612688 -196580976 + L1ME3A LINE L1 5931 6170 0 5086 185 29 16 chr1 85613044 85615105 -196578559 - L1PA16 LINE L1 -1 6165 4075 1125 172 60 5 chr1 85615113 85615328 -196578336 - AluJb SINE Alu -2 310 84 3086 247 1 4 chr1 85615329 85616050 -196577614 - L1PA16 LINE L1 -2067 4079 3361 2906 258 41 7 chr1 85616054 85616974 -196576690 + L1P LINE L1 2456 3407 -2739 251 298 144 19 chr1 85617893 85617997 -196575667 - L2 LINE L2 -19 3253 3137 2689 92 11 0 chr1 85618062 85618422 -196575242 - THE1B LTR MaLR 0 364 1 2464 67 0 3 chr1 85619069 85619381 -196574283 + AluY SINE Alu 1 311 0 28 48 0 0 chr1 85619741 85619783 -196573881 + AT_rich Low_complexity Low_complexity 1 42 0 200 295 98 16 chr1 85620114 85620236 -196573428 - MIR SINE MIR -108 154 23 22 35 0 0 chr1 85620378 85620407 -196573257 + AT_rich Low_complexity Low_complexity 1 29 0 332 276 211 13 chr1 85620720 85620876 -196572788 - L2 LINE L2 -5 3308 3122 447 305 42 36 chr1 85621169 85621336 -196572328 - MIR SINE MIR -62 200 33 1296 171 11 56 chr1 85622072 85622341 -196571323 - AluJo SINE Alu -43 269 13 4437 171 45 11 chr1 85623351 85624224 -196569440 - L1MA7 LINE L1 0 6291 5390 2467 51 0 16 chr1 85624441 85624752 -196568912 + AluY SINE Alu 1 306 -5 297 247 65 11 chr1 85624875 85624968 -196568696 + L2 LINE L2 3169 3266 -6 198 103 0 0 chr1 85625515 85625544 -196568120 + (GA)n Simple_repeat Simple_repeat 1 29 0 356 235 49 0 chr1 85626410 85626512 -196567152 + L1ME4a LINE L1 5770 5876 -245 274 348 22 0 chr1 85626677 85626766 -196566898 + L2 LINE L2 3182 3272 0 327 291 66 7 chr1 85626782 85626933 -196566731 + L1ME4a LINE L1 5959 6118 -3 1336 182 37 24 chr1 85626939 85627235 -196566429 + L1MB7 LINE L1 5875 6174 -10 2147 122 0 0 chr1 85627484 85627779 -196565885 + AluSx SINE Alu 1 295 -17 628 141 0 0 chr1 85628450 85628542 -196565122 + FLAM_A SINE Alu 30 121 -21 198 305 51 34 chr1 85629604 85629722 -196563942 + MIR SINE MIR 97 216 -46 197 200 0 0 chr1 85631214 85631249 -196562415 - L2 LINE L2 -12 3301 3267 * 221 176 122 27 chr1 85631224 85631298 -196562366 - MIR SINE MIR -16 246 166 230 333 11 33 chr1 85631458 85631548 -196562116 + MIR SINE MIR 29 116 -146 1831 116 0 30 chr1 85631560 85631828 -196561836 - AluSq SINE Alu -53 260 1 1026 199 23 14 chr1 85631922 85632138 -196561526 + MER20 DNA MER1_type 1 218 -1 2076 146 128 10 chr1 85632228 85632611 -196561053 + MSTA LTR MaLR 1 428 0 238 309 36 0 chr1 85632855 85632965 -196560699 + L1ME LINE L1 5755 5868 -253 27 0 0 0 chr1 85633146 85633173 -196560491 + AT_rich Low_complexity Low_complexity 1 27 0 973 265 78 96 chr1 85633215 85634170 -196559494 + L1MC4 LINE L1 7098 8034 -8 238 170 0 21 chr1 85634559 85634606 -196559058 + MLT1J2 LTR MaLR 67 112 -338 419 237 10 26 chr1 85634687 85634817 -196558847 + MLT1J2 LTR MaLR 256 431 -19 2254 106 3 3 chr1 85635059 85635371 -196558293 + AluSx SINE Alu 1 312 0 505 253 11 0 chr1 85635371 85635549 -196558115 + GA-rich Low_complexity Low_complexity 1 180 0 26 0 0 0 chr1 85636541 85636567 -196557097 + AT_rich Low_complexity Low_complexity 1 26 0 389 315 126 58 chr1 85636767 85637379 -196556285 + L2 LINE L2 2616 3269 -3 389 22 0 0 chr1 85638268 85638314 -196555350 - AluY SINE Alu -12 288 243 390 309 7 7 chr1 85639317 85639456 -196554208 - MER103 DNA DNA -2 164 26 24 0 0 0 chr1 85639475 85639499 -196554165 + AT_rich Low_complexity Low_complexity 1 24 0 647 213 168 0 chr1 85639697 85639852 -196553812 - MER5A DNA MER1_type -2 187 7 874 188 6 42 chr1 85640178 85640343 -196553321 + MER5A DNA MER1_type 1 159 -30 231 255 0 0 chr1 85640352 85640403 -196553261 + MIR3 SINE MIR 151 201 -7 601 279 23 36 chr1 85640453 85640672 -196552992 + MIR SINE MIR 19 234 -28 976 293 10 17 chr1 85640674 85640971 -196552693 + L2 LINE L2 3008 3302 -11 913 137 0 0 chr1 85640972 85641103 -196552561 + FLAM_C SINE Alu 1 131 -12 1758 166 145 20 chr1 85641643 85642035 -196551629 + MER65A LTR ERV1 5 445 0 325 247 0 0 chr1 85642292 85642365 -196551299 - MER117 DNA MER1_type -119 78 6 286 154 0 15 chr1 85642451 85642516 -196551148 + MER65A LTR ERV1 1 64 -381 893 126 0 15 chr1 85644139 85644274 -196549390 + FLAM_C SINE Alu 1 133 0 328 322 35 29 chr1 85644357 85644528 -196549136 + MIR SINE MIR 56 227 -35 2541 55 0 10 chr1 85644530 85644842 -196548822 + AluY SINE Alu 1 309 -2 33 0 0 0 chr1 85644872 85644905 -196548759 + AT_rich Low_complexity Low_complexity 1 33 0 2813 7 0 0 chr1 85644944 85645248 -196548416 + AluYa5 SINE Alu 1 304 -7 341 318 113 20 chr1 85646017 85646168 -196547496 - L2 LINE L2 -5 3267 3103 363 229 24 0 chr1 85646223 85646306 -196547358 - U6 snRNA snRNA 0 107 23 262 207 223 66 chr1 85648363 85648484 -196545180 - MIR SINE MIR 0 262 123 180 379 68 38 chr1 85648978 85649110 -196544554 - L2 LINE L2 0 3272 3137 23 33 0 0 chr1 85649565 85649595 -196544069 + AT_rich Low_complexity Low_complexity 1 30 0 288 179 45 15 chr1 85650295 85650362 -196543302 - L1ME4a LINE L1 -94 6027 5959 640 158 8 39 chr1 85650370 85650497 -196543167 - L1MD3 LINE L1 -10 7985 7863 289 236 169 15 chr1 85650509 85650704 -196542960 - L1ME4a LINE L1 -181 5940 5716 330 296 86 0 chr1 85650712 85650874 -196542790 - L1ME4a LINE L1 -618 5503 5328 240 59 0 0 chr1 85651784 85651818 -196541846 + (TA)n Simple_repeat Simple_repeat 1 34 0 345 220 18 0 chr1 85651827 85651923 -196541741 - L1MC4 LINE L1 -1339 6983 2003 3015 214 74 22 chr1 85652187 85652231 -196541433 - L1MC4 LINE L1 0 8042 8002 1660 168 75 49 chr1 85652231 85652617 -196541047 + MSTD LTR MaLR 1 396 0 3015 214 74 22 chr1 85652617 85652712 -196540952 - L1MC4 LINE L1 -40 8002 7913 216 0 0 0 chr1 85652712 85652736 -196540928 + (CA)n Simple_repeat Simple_repeat 1 24 0 3015 214 74 22 chr1 85652736 85653080 -196540584 - L1MC4 LINE L1 -129 7913 7588 4128 64 24 4 chr1 85653080 85653625 -196540039 - L1PA7 LINE L1 -3 6151 5596 3015 214 74 22 chr1 85653625 85654009 -196539655 - L1MC4 LINE L1 -454 7588 7128 1579 194 19 13 chr1 85654021 85654330 -196539334 - AluJo SINE Alu -1 311 1 2811 16 0 12 chr1 85654400 85654719 -196538945 - AluYb8 SINE Alu -3 315 1 7694 123 27 30 chr1 85654996 85656279 -196537385 + HSMAR2 DNA Mariner 3 1281 -21 226 67 0 0 chr1 85656318 85656348 -196537316 + HSMAR2 DNA Mariner 1272 1301 -1 414 274 59 30 chr1 85656927 85657062 -196536602 - MIR3 SINE MIR -4 204 66 738 315 143 56 chr1 85657718 85658283 -196535381 - L2 LINE L2 0 3272 2591 2426 165 50 20 chr1 85658283 85658779 -196534885 + L1MB5 LINE L1 5656 6166 -8 738 315 143 56 chr1 85658779 85659074 -196534590 - L2 LINE L2 -681 2591 2323 557 292 6 22 chr1 85659112 85659290 -196534374 + MIR SINE MIR 88 262 0 196 271 171 0 chr1 85659984 85660054 -196533610 + MIR SINE MIR 175 256 -6 226 286 16 0 chr1 85660339 85660402 -196533262 + MIR SINE MIR 73 136 -126 217 205 169 60 chr1 85660461 85660544 -196533120 + L2 LINE L2 3181 3272 0 343 270 52 26 chr1 85661410 85661525 -196532139 - L2 LINE L2 0 3313 3196 300 27 0 0 chr1 85662087 85662124 -196531540 + (GGA)n Simple_repeat Simple_repeat 1 37 0 1852 157 38 14 chr1 85662403 85662696 -196530968 + AluSx SINE Alu 1 300 -12 267 346 89 42 chr1 85662722 85662959 -196530705 - L2 LINE L2 -338 2976 2729 630 241 44 22 chr1 85663046 85663320 -196530344 + L1MEc LINE L1 2015 2294 -4102 1149 245 6 37 chr1 85663326 85663648 -196530016 + L1ME2 LINE L1 5843 6154 -10 184 333 58 14 chr1 85663778 85663847 -196529817 - L2 LINE L2 -26 3246 3175 845 260 20 69 chr1 85664024 85664370 -196529294 + L1ME1 LINE L1 5745 6073 -93 376 186 62 10 chr1 85664446 85664543 -196529121 + L1MA10 LINE L1 6231 6332 -2 517 276 0 8 chr1 85664690 85664824 -196528840 - MIR SINE MIR -17 245 113 254 295 48 56 chr1 85664824 85665075 -196528589 - MLT1J LTR MaLR -6 505 257 357 102 0 0 chr1 85665095 85665144 -196528520 + L1PB4 LINE L1 6057 6105 -51 331 269 14 33 chr1 85665156 85665293 -196528371 - MLT1J LTR MaLR -203 206 72 191 333 64 13 chr1 85665340 85665418 -196528246 - MIR SINE MIR -177 85 4 225 313 16 0 chr1 85666180 85666244 -196527420 - L2 LINE L2 -10 3303 3239 24 32 0 0 chr1 85667057 85667088 -196526576 + AT_rich Low_complexity Low_complexity 1 31 0 205 229 0 29 chr1 85667332 85667402 -196526262 + (TA)n Simple_repeat Simple_repeat 1 68 0 1358 163 21 18 chr1 85667849 85668807 -196524857 + L1MB8 LINE L1 5096 6157 -21 433 235 80 64 chr1 85669556 85669743 -196523921 + L2 LINE L2 3102 3291 -22 1039 117 0 6 chr1 85670161 85670324 -196523340 + L1PA14 LINE L1 5997 6158 -3 1484 192 39 11 chr1 85670624 85670905 -196522759 + AluJb SINE Alu 1 289 -23 31 44 0 0 chr1 85671723 85671768 -196521896 + AT_rich Low_complexity Low_complexity 1 45 0 2225 80 0 11 chr1 85672785 85673130 -196520534 - AluY SINE Alu 0 342 1 240 143 0 61 chr1 85673095 85673132 -196520532 - Alu SINE Alu -132 168 133 560 86 0 12 chr1 85673132 85673213 -196520451 - L1PA10 LINE L1 -4 6164 6085 240 143 0 61 chr1 85673213 85673224 -196520440 - Alu SINE Alu -167 133 123 453 264 132 6 chr1 85673846 85674013 -196519651 + MIR SINE MIR 22 209 -53 456 322 94 0 chr1 85675037 85675208 -196518456 - MIR SINE MIR -70 192 6 261 279 82 8 chr1 85677273 85677395 -196516269 + L2 LINE L2 2930 3060 -212 2009 140 0 3 chr1 85677447 85677739 -196515925 - AluJb SINE Alu -10 302 12 1274 292 36 5 chr1 85678007 85678418 -196515246 - LTR16C LTR ERVL 0 491 68 356 221 23 12 chr1 85678828 85678914 -196514750 + MER58 DNA MER1_type 129 2420 0 935 260 209 37 chr1 85679149 85679628 -196514036 + HAL1 LINE L1 764 1160 -1347 1992 144 10 67 chr1 85679628 85680016 -196513648 + MER47A DNA MER2_type 1 366 0 935 260 209 37 chr1 85680016 85680529 -196513135 + HAL1 LINE L1 1160 1926 -581 2181 127 0 16 chr1 85681049 85681363 -196512301 + AluSx SINE Alu 1 309 -3 978 109 0 0 chr1 85681431 85681568 -196512096 + AluSg/x SINE Alu 162 298 -14 341 285 89 57 chr1 85681569 85681727 -196511937 + HAL1 LINE L1 2339 2501 -6 23 0 0 0 chr1 85684374 85684397 -196509267 + AT_rich Low_complexity Low_complexity 1 23 0 326 296 11 0 chr1 85684397 85684485 -196509179 + (CAGAGA)n Simple_repeat Simple_repeat 2 90 0 2278 71 3 19 chr1 85684519 85684827 -196508837 - AluY SINE Alu -8 303 1 487 317 73 0 chr1 85684967 85685131 -196508533 + MIR SINE MIR 10 185 -77 1725 231 163 27 chr1 85685132 85685981 -196507683 + L2 LINE L2 2304 3251 -62 316 284 69 10 chr1 85685992 85686094 -196507570 + MIR SINE MIR 155 262 0 2015 176 92 12 chr1 85686623 85687123 -196506541 + L1MA9 LINE L1 5751 6290 -22 913 177 14 0 chr1 85687502 85687679 -196505985 + FRAM SINE Alu 1 176 0 21 0 0 0 chr1 85688367 85688388 -196505276 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr1 85688417 85688460 -196505204 + AT_rich Low_complexity Low_complexity 1 43 0 2118 130 7 0 chr1 85688766 85689073 -196504591 + AluSx SINE Alu 1 309 -3 1761 197 43 5 chr1 85689862 85690232 -196503432 + MSTB1 LTR MaLR 49 432 0 1658 142 44 69 chr1 85692786 85693103 -196500561 - AluSx SINE Alu -1 311 3 442 304 7 68 chr1 85693216 85693364 -196500300 + MIR SINE MIR 12 141 -67 263 263 37 11 chr1 85693715 85693807 -196499857 - MER5A DNA MER1_type -80 109 2 225 226 19 0 chr1 85693810 85693863 -196499801 + MIR SINE MIR 159 212 -50 725 201 98 17 chr1 85693991 85694165 -196499499 - MER5A DNA MER1_type 0 189 2 1266 205 19 42 chr1 85694190 85694567 -196499097 + MLT2B1 LTR ERVL 1 366 -48 243 173 0 0 chr1 85694567 85694619 -196499045 + (TG)n Simple_repeat Simple_repeat 2 53 0 34 24 0 0 chr1 85694654 85694695 -196498969 + AT_rich Low_complexity Low_complexity 1 41 0 292 333 71 8 chr1 85694943 85695069 -196498595 + L2 LINE L2 3179 3312 -1 954 183 36 46 chr1 85695195 85695414 -196498250 + MER20 DNA MER1_type 1 217 -2 465 179 15 22 chr1 85696400 85696534 -196497130 + GA-rich Low_complexity Low_complexity 2 134 0 482 263 80 12 chr1 85696544 85696729 -196496935 - MIR SINE MIR -19 243 37 21 36 0 0 chr1 85696808 85696836 -196496828 + AT_rich Low_complexity Low_complexity 1 28 0 294 275 181 31 chr1 85696977 85697137 -196496527 - L2 LINE L2 0 3313 3130 222 37 0 0 chr1 85697299 85697326 -196496338 + (TC)n Simple_repeat Simple_repeat 1 27 0 495 306 49 33 chr1 85697420 85697603 -196496061 + MIR3 SINE MIR 17 202 -6 7673 195 104 13 chr1 85697690 85699440 -196494224 + L1MA1 LINE L1 10 1918 -5647 819 95 108 0 chr1 85699454 85699612 -196494052 + L1MA1 LINE L1 3441 3615 -3950 769 155 12 0 chr1 85699605 85699766 -196493898 - L1 LINE L1 -2335 3811 3649 * 8155 139 33 14 chr1 85699767 85702353 -196491311 + L1MA1 LINE L1 5090 7721 0 237 200 0 0 chr1 85703922 85703967 -196489697 - L2 LINE L2 -5 3308 3264 255 61 0 0 chr1 85704404 85704437 -196489227 + (CA)n Simple_repeat Simple_repeat 2 34 0 4094 146 6 13 chr1 85704452 85705169 -196488495 + L1PA13 LINE L1 3439 4150 -1996 6382 80 20 0 chr1 85705169 85705184 -196488480 + L1PA13 LINE L1 4399 4412 -1751 1531 142 0 29 chr1 85705184 85705430 -196488234 + AluJb SINE Alu 73 311 -1 6382 80 20 0 chr1 85705430 85707148 -196486516 + L1PA13 LINE L1 4412 6158 -5 29 28 0 0 chr1 85707262 85707298 -196486366 + AT_rich Low_complexity Low_complexity 1 36 0 236 435 32 0 chr1 85707307 85707431 -196486233 - L2 LINE L2 -1 3271 3144 470 323 84 88 chr1 85707997 85708474 -196485190 - L2 LINE L2 -429 2885 2411 232 333 0 39 chr1 85708630 85708708 -196484956 + MIR SINE MIR 48 122 -140 180 0 0 0 chr1 85708714 85708734 -196484930 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1705 171 37 43 chr1 85708799 85709149 -196484515 + MER7A DNA MER2_type 1 346 0 2466 66 0 24 chr1 85709414 85709747 -196483917 + L1PA7 LINE L1 5823 6147 -7 27 49 0 0 chr1 85711138 85711179 -196482485 + AT_rich Low_complexity Low_complexity 1 41 0 5121 167 28 31 chr1 85711190 85713299 -196480365 - L1PA16 LINE L1 -7 6159 4053 24 0 0 0 chr1 85713577 85713601 -196480063 + AT_rich Low_complexity Low_complexity 1 24 0 749 207 83 0 chr1 85714106 85714275 -196479389 - MER20 DNA MER1_type -4 215 33 3162 241 47 34 chr1 85714687 85715621 -196478043 + L2 LINE L2 1671 2616 -698 462 167 0 83 chr1 85715651 85715759 -196477905 - L1MA9 LINE L1 -22 6290 6191 2728 91 11 3 chr1 85715759 85716120 -196477544 + THE1B LTR MaLR 1 364 0 462 167 0 83 chr1 85716120 85716131 -196477533 - L1MA9 LINE L1 -121 6191 6181 1312 145 25 4 chr1 85716134 85716369 -196477295 - L1MA9 LINE L1 -231 6081 5842 257 25 75 0 chr1 85716384 85716424 -196477240 + A-rich Low_complexity Low_complexity 2 44 0 239 204 0 0 chr1 85716424 85716478 -196477186 + L1MA5 LINE L1 5307 5360 -974 * 448 120 70 30 chr1 85716477 85716537 -196477127 + L1MA5 LINE L1 5725 5792 -508 236 30 30 0 chr1 85716537 85716570 -196477094 + (TG)n Simple_repeat Simple_repeat 2 35 0 448 120 70 30 chr1 85716570 85716609 -196477055 + L1MA5 LINE L1 5792 5828 -472 1133 283 85 47 chr1 85716616 85717298 -196476366 + L2 LINE L2 2609 3309 -4 796 118 35 0 chr1 85717517 85717661 -196476003 - L1MA8 LINE L1 0 6291 6143 1225 211 31 21 chr1 85718024 85718313 -196475351 - MLT1F LTR MaLR 0 542 251 351 0 0 0 chr1 85718345 85718384 -196475280 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 175 0 0 chr1 85718438 85718478 -196475186 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 452 222 113 94 chr1 85718672 85718884 -196474780 - MLT1F LTR MaLR -293 249 34 453 261 0 0 chr1 85720855 85720947 -196472717 + L2 LINE L2 3222 3313 0 516 32 0 0 chr1 85723625 85723687 -196469977 + (CA)n Simple_repeat Simple_repeat 2 63 0 21 26 0 26 chr1 85724226 85724244 -196469420 + GC_rich Low_complexity Low_complexity 1 18 -20 186 43 0 0 chr1 85724244 85724267 -196469397 + (CTCGG)n Simple_repeat Simple_repeat 4 26 0 21 26 0 26 chr1 85724267 85724287 -196469377 + GC_rich Low_complexity Low_complexity 18 38 0 236 200 17 0 chr1 85724322 85724382 -196469282 + (CTG)n Simple_repeat Simple_repeat 1 61 0 213 204 0 0 chr1 85724425 85724469 -196469195 + C-rich Low_complexity Low_complexity 2 45 0 385 314 53 20 chr1 85725551 85725723 -196467941 + MIR SINE MIR 2 190 -18 222 276 52 60 chr1 85726126 85726242 -196467422 - MIR SINE MIR -56 206 92 296 218 57 89 chr1 85726466 85726590 -196467074 - MIR SINE MIR -40 222 103 1720 154 0 0 chr1 85726731 85726997 -196466667 - MER7A DNA MER2_type 0 336 71 2208 110 3 0 chr1 85726997 85727288 -196466376 + AluSq SINE Alu 1 292 -21 605 226 6 0 chr1 85727288 85727465 -196466199 + GA-rich Low_complexity Low_complexity 1 178 0 545 230 0 0 chr1 85727482 85727582 -196466082 - MER7A DNA MER2_type -248 98 1 364 224 171 67 chr1 85727606 85727816 -196465848 - Charlie8 DNA MER1_type -2155 262 31 6959 64 0 6 chr1 85728043 85729266 -196464398 - L1PA7 LINE L1 -2 6152 4930 792 295 80 35 chr1 85731241 85731614 -196462050 - L2 LINE L2 -3 3310 2921 311 199 96 58 chr1 85731644 85731800 -196461864 - Charlie7 DNA MER1_type -8 2604 2443 206 343 15 0 chr1 85731901 85731968 -196461696 - L2 LINE L2 -577 2737 2670 1742 245 67 11 chr1 85732107 85732658 -196461006 + L1MC4 LINE L1 6725 7306 -736 187 354 15 15 chr1 85733758 85733823 -196459841 + MIR SINE MIR 38 102 -106 226 263 132 9 chr1 85733983 85734097 -196459567 + MLT1J LTR MaLR 384 511 0 270 373 86 34 chr1 85734101 85734578 -196459086 - L2 LINE L2 -1831 1483 982 224 372 58 13 chr1 85734585 85734741 -196458923 + L2 LINE L2 2722 2884 -430 317 348 111 55 chr1 85734948 85735507 -196458157 + L2 LINE L2 2627 3225 -47 1505 168 21 41 chr1 85735614 85735905 -196457759 + AluJo SINE Alu 9 293 -19 529 325 0 30 chr1 85736109 85736278 -196457386 - MIR3 SINE MIR -24 184 21 260 272 95 82 chr1 85736595 85736742 -196456922 + MIR SINE MIR 1 149 -113 213 39 0 0 chr1 85738803 85738829 -196454835 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1579 183 21 11 chr1 85739591 85739748 -196453916 - AluJb SINE Alu -22 290 127 2228 101 34 0 chr1 85739748 85740045 -196453619 - AluSx SINE Alu -5 307 1 1579 183 21 11 chr1 85740045 85740172 -196453492 - AluJb SINE Alu -185 127 3 203 265 20 0 chr1 85740647 85740696 -196452968 - MIR3 SINE MIR -10 198 149 548 323 60 23 chr1 85740929 85741146 -196452518 + MIR SINE MIR 22 246 -16 366 321 0 0 chr1 85741254 85741338 -196452326 + L2 LINE L2 3184 3267 -5 10167 30 0 0 chr1 85741373 85742586 -196451078 - L1PA3 LINE L1 -1438 4708 3496 7636 26 3 1 chr1 85742586 85744029 -196449635 + L1PA3 LINE L1 4706 6155 0 208 242 0 106 chr1 85744050 85744116 -196449548 + MIR SINE MIR 48 106 -156 1161 234 3 14 chr1 85744124 85744412 -196449252 - L1PB4 LINE L1 -1 6155 5871 370 307 14 14 chr1 85744423 85744563 -196449101 + MIR SINE MIR 123 262 0 375 320 142 9 chr1 85744596 85744815 -196448849 + MIR SINE MIR 3 250 -12 738 201 0 62 chr1 85745207 85745341 -196448323 + Charlie5 DNA MER1_type 1 123 -2501 2725 176 31 5 chr1 85745341 85745893 -196447771 + L1MB4 LINE L1 5615 6180 0 738 201 0 62 chr1 85745893 85745937 -196447727 + Charlie5 DNA MER1_type 123 168 -2456 238 224 0 0 chr1 85746305 85746354 -196447310 - MIR SINE MIR -62 200 152 763 166 19 21 chr1 85746902 85747093 -196446571 - L1MA6 LINE L1 -295 5866 5679 2267 162 33 18 chr1 85747093 85747549 -196446115 + L1MA8 LINE L1 5828 6291 0 430 263 180 64 chr1 85748275 85748652 -196445012 - MLT1H LTR MaLR -6 543 123 21 0 0 0 chr1 85749114 85749135 -196444529 + AT_rich Low_complexity Low_complexity 1 21 0 437 250 92 7 chr1 85749402 85749554 -196444110 + Charlie4 DNA MER1_type 1796 1960 -1 180 125 0 0 chr1 85750894 85750926 -196442738 + (GGA)n Simple_repeat Simple_repeat 3 34 0 2521 133 0 3 chr1 85751731 85752091 -196441573 + THE1B LTR MaLR 6 364 0 604 164 24 145 chr1 85752721 85752851 -196440813 - MER39 LTR ERV1 0 707 610 8219 42 1 5 chr1 85752851 85754630 -196439034 - L1PA5 LINE L1 -3 6151 4364 604 164 24 145 chr1 85754630 85754706 -196438958 - MER39 LTR ERV1 -97 610 526 8613 120 37 9 chr1 85754712 85756215 -196437449 + THE1C-int LTR MaLR 1 1570 -10 2087 166 21 16 chr1 85756225 85756598 -196437066 + THE1C LTR MaLR 1 375 0 519 243 100 88 chr1 85756598 85756838 -196436826 - MER39 LTR ERV1 -203 504 259 225 271 12 24 chr1 85756823 85756908 -196436756 - LTR48B LTR ERV1 -555 89 6 * 677 227 102 42 chr1 85756921 85757185 -196436479 + Charlie4 DNA MER1_type 1 280 -1681 917 117 19 7 chr1 85758277 85758431 -196435233 - L1PB4 LINE L1 -5 6151 5996 422 212 61 8 chr1 85758651 85758783 -196434881 + Charlie4 DNA MER1_type 1823 1961 0 1190 201 127 0 chr1 85758873 85759102 -196434562 - AluJo SINE Alu -54 258 1 2270 62 0 4 chr1 85759656 85759928 -196433736 + AluY SINE Alu 34 304 -7 4006 139 63 13 chr1 85759999 85760676 -196432988 + MER50 LTR ERV1 1 711 -23 1722 188 3 10 chr1 85760718 85761027 -196432637 + AluJo SINE Alu 1 307 -5 1926 123 46 0 chr1 85761419 85761704 -196431960 + AluSx SINE Alu 1 298 -14 791 89 24 0 chr1 85763396 85763520 -196430144 + L1PA15 LINE L1 6036 6162 -3 1192 312 60 12 chr1 85763533 85764017 -196429647 + L1MA4 LINE L1 350 856 -6709 * 8025 187 31 75 chr1 85764015 85765077 -196428587 + L1MA4 LINE L1 2529 3636 -4083 2025 155 0 0 chr1 85765077 85765374 -196428290 + AluSx SINE Alu 3 299 -13 8025 187 31 75 chr1 85765374 85765475 -196428189 + L1MA4 LINE L1 3636 3740 -3979 1717 192 3 0 chr1 85765475 85765772 -196427892 + AluJb SINE Alu 1 298 -14 8025 187 31 75 chr1 85765772 85766288 -196427376 + L1MA4 LINE L1 3740 4277 -3442 1446 186 63 7 chr1 85766288 85766584 -196427080 - AluJb SINE Alu 0 311 1 8025 187 31 75 chr1 85766584 85767710 -196425954 + L1MA4 LINE L1 4277 5451 -2268 252 0 0 0 chr1 85767710 85767738 -196425926 + (CAGG)n Simple_repeat Simple_repeat 1 28 0 8025 187 31 75 chr1 85767738 85767752 -196425912 + L1MA4 LINE L1 5451 5464 -2255 1142 140 174 43 chr1 85767752 85767987 -196425677 + AluJo SINE Alu 34 299 -13 8025 187 31 75 chr1 85767987 85768157 -196425507 + L1MA4 LINE L1 5464 5640 -2079 1617 174 3 14 chr1 85768157 85768445 -196425219 + AluSx SINE Alu 27 311 -1 8025 187 31 75 chr1 85768445 85770849 -196422815 + L1MA4 LINE L1 5640 7698 -21 1393 233 64 3 chr1 85771357 85771701 -196421963 + MLT1A1 LTR MaLR 1 365 0 7944 202 26 21 chr1 85771718 85772770 -196420894 + L1P4 LINE L1 3335 4380 -1786 189 0 0 0 chr1 85772770 85772791 -196420873 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 7944 202 26 21 chr1 85772791 85772862 -196420802 + L1P4 LINE L1 4380 4449 -1717 2326 81 0 3 chr1 85772862 85773157 -196420507 + AluY SINE Alu 17 310 -1 7944 202 26 21 chr1 85773157 85774470 -196419194 + L1P4 LINE L1 4449 5785 -381 9389 88 10 10 chr1 85774470 85775812 -196417852 + L1P LINE L1 3324 4666 -1480 189 0 0 0 chr1 85775812 85775833 -196417831 + (CAAAAA)n Simple_repeat Simple_repeat 1 21 0 191 182 114 0 chr1 85775839 85775883 -196417781 - MIR SINE MIR -107 155 107 24 0 0 0 chr1 85776354 85776378 -196417286 + AT_rich Low_complexity Low_complexity 1 24 0 1848 134 42 36 chr1 85776523 85776829 -196416835 - AluJb SINE Alu -4 308 1 1924 125 0 38 chr1 85776920 85777208 -196416456 + AluSx SINE Alu 1 277 -35 224 98 0 24 chr1 85777213 85777254 -196416410 + (GAA)n Simple_repeat Simple_repeat 2 41 0 189 147 0 0 chr1 85777892 85777926 -196415738 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 85778526 85778547 -196415117 + AT_rich Low_complexity Low_complexity 1 21 0 1864 240 53 20 chr1 85779077 85779626 -196414038 - MER74B LTR ERVL 0 622 56 200 354 0 31 chr1 85779741 85779806 -196413858 + L2 LINE L2 3154 3216 -56 13732 151 34 28 chr1 85780180 85782592 -196411072 + L1M1 LINE L1 16 2445 -5120 2154 121 0 7 chr1 85782592 85782889 -196410775 - AluSq SINE Alu -18 295 1 13732 151 34 28 chr1 85782889 85783018 -196410646 + L1M1 LINE L1 2445 2572 -4993 3888 153 6 7 chr1 85783012 85783719 -196409945 - L1PA10 LINE L1 -1187 4959 4254 * 5905 104 25 7 chr1 85783720 85784908 -196408756 + L1PA10 LINE L1 4948 6153 -15 5665 97 72 18 chr1 85784908 85785955 -196407709 + L1M1 LINE L1 2564 3666 -3899 40355 37 23 1 chr1 85785958 85791993 -196401671 + L1PA3 LINE L1 3 6171 0 526 226 0 0 chr1 85792025 85792149 -196401515 + L1M1 LINE L1 3653 3776 -3789 2059 161 31 6 chr1 85792149 85792504 -196401160 - THE1B LTR MaLR 0 364 1 8181 146 56 24 chr1 85792504 85794034 -196399630 - THE1C-int LTR MaLR 0 1580 1 2561 117 5 8 chr1 85794034 85794410 -196399254 - THE1C LTR MaLR 0 375 1 1141 257 112 75 chr1 85794466 85795168 -196398496 - L2 LINE L2 -164 3149 2434 2586 155 43 52 chr1 85795273 85795520 -196398144 + MER41E LTR ERV1 1 249 -263 2194 107 0 0 chr1 85795520 85795809 -196397855 - AluSx SINE Alu -23 289 1 2586 155 43 52 chr1 85795809 85796078 -196397586 + MER41E LTR ERV1 249 512 0 486 296 32 32 chr1 85796227 85796413 -196397251 + MER41E-int LTR ERV1 145 330 -6875 940 296 44 48 chr1 85796938 85797750 -196395914 + MER41E-int LTR ERV1 3219 4020 -3736 1367 244 58 41 chr1 85797789 85798298 -196395366 + MER41E-int LTR ERV1 6135 6655 -21 1703 128 86 42 chr1 85798298 85798657 -196395007 - THE1C LTR MaLR 0 375 1 1367 244 58 41 chr1 85798657 85798680 -196394984 + MER41E-int LTR ERV1 6655 6676 0 1904 113 11 0 chr1 85798765 85799049 -196394615 + MER41E LTR ERV1 3 289 -223 763 169 0 0 chr1 85799049 85799167 -196394497 + AluSq/x SINE Alu 1 118 -195 1221 166 22 14 chr1 85799203 85799426 -196394238 + MER41E LTR ERV1 277 501 -11 744 298 37 0 chr1 85799426 85799644 -196394020 - L2 LINE L2 -938 2376 2151 609 241 43 47 chr1 85799662 85799894 -196393770 - LTR16A1 LTR ERVL -14 443 213 * 1260 212 31 31 chr1 85799892 85800184 -196393480 - MLT1A2 LTR MaLR -82 292 1 364 156 0 0 chr1 85800184 85800245 -196393419 - MER45 DNA AcHobo -1416 165 105 1948 260 85 55 chr1 85800283 85800386 -196393278 - L2 LINE L2 -1647 1667 1569 2292 108 0 13 chr1 85800386 85800700 -196392964 - AluSg SINE Alu 0 310 1 1948 260 85 55 chr1 85800700 85801358 -196392306 - L2 LINE L2 -1745 1569 883 2649 248 69 17 chr1 85801846 85802557 -196391107 - L2 LINE L2 -1160 2154 1407 230 273 127 53 chr1 85802645 85802795 -196390869 + L2 LINE L2 3118 3278 -35 223 144 33 22 chr1 85803887 85803977 -196389687 + (TA)n Simple_repeat Simple_repeat 1 91 0 36 53 0 0 chr1 85804010 85804067 -196389597 + AT_rich Low_complexity Low_complexity 1 57 0 1210 229 121 27 chr1 85804236 85804608 -196389056 - MLT1I LTR MaLR 0 409 3 2018 87 48 28 chr1 85804819 85805108 -196388556 + AluY SINE Alu 1 295 -16 401 192 233 4 chr1 85805181 85805321 -196388343 + L1ME1 LINE L1 6006 6332 -2 676 228 8 0 chr1 85805332 85805455 -196388209 + FLAM_C SINE Alu 1 124 -19 249 374 172 15 chr1 85805482 85805680 -196387984 - MIR SINE MIR -10 252 24 931 133 15 0 chr1 85805710 85805845 -196387819 + AluJb SINE Alu 1 137 -175 39740 48 21 2 chr1 85805845 85811878 -196381786 + L1PA4 LINE L1 2 6153 -2 764 168 0 0 chr1 85812109 85812228 -196381436 + FLAM_C SINE Alu 1 119 -24 26 0 0 0 chr1 85812232 85812258 -196381406 + AT_rich Low_complexity Low_complexity 1 26 0 631 214 30 0 chr1 85812545 85812676 -196380988 + AluJo SINE Alu 1 135 -177 674 314 126 40 chr1 85812721 85813278 -196380386 - L1M4 LINE L1 -1679 4467 3863 284 278 0 0 chr1 85813325 85813397 -196380267 - L1M4 LINE L1 -2287 3859 3788 966 303 201 37 chr1 85813460 85813880 -196379784 - L1M4 LINE L1 -2456 3690 3340 1842 136 14 11 chr1 85813880 85814180 -196379484 - AluSx SINE Alu 0 301 1 966 303 201 37 chr1 85814180 85814824 -196378840 - L1M4 LINE L1 -2806 3340 2450 3392 88 13 0 chr1 85815380 85815832 -196377832 - LTR22A LTR ERVK 0 458 1 280 290 102 51 chr1 85816264 85816334 -196377330 + L1ME4a LINE L1 5534 5599 -522 2215 90 13 13 chr1 85816334 85816646 -196377018 + AluSx SINE Alu 1 312 0 280 290 102 51 chr1 85816646 85816947 -196376717 + L1ME4a LINE L1 5599 5924 -197 548 286 126 24 chr1 85817731 85818025 -196375639 - L1M4 LINE L1 -2682 3464 3141 1555 184 103 31 chr1 85818025 85818470 -196375194 + L1ME1 LINE L1 5681 6157 -9 389 182 0 117 chr1 85818334 85818480 -196375184 + L1MA9 LINE L1 6177 6306 -6 * 2008 155 0 25 chr1 85818480 85818796 -196374868 + AluJb SINE Alu 1 308 -4 1220 168 141 10 chr1 85819620 85820056 -196373608 - LTR64 LTR ERVK 0 558 1 204 135 0 0 chr1 85820906 85820943 -196372721 + (A)n Simple_repeat Simple_repeat 1 37 0 999 287 109 0 chr1 85821047 85821395 -196372269 + L2 LINE L2 622 1007 -2307 678 257 64 6 chr1 85821435 85821606 -196372058 + L2 LINE L2 1323 1503 -1811 1080 214 109 0 chr1 85821784 85822041 -196371623 + LTR47A LTR ERVL 2 286 -166 1454 199 19 22 chr1 85822043 85822314 -196371350 - AluJb SINE Alu -42 270 1 7236 169 24 22 chr1 85822314 85822892 -196370772 + L1PA15 LINE L1 3712 4287 -1878 2372 86 10 0 chr1 85822892 85823183 -196370481 - AluSx SINE Alu -17 295 2 7236 169 24 22 chr1 85823183 85824407 -196369257 + L1PA15 LINE L1 4287 5507 -658 1711 178 30 0 chr1 85824407 85824705 -196368959 + AluJo SINE Alu 1 307 -5 7236 169 24 22 chr1 85824705 85824959 -196368705 + L1PA15 LINE L1 5507 5778 -387 2224 112 3 10 chr1 85824959 85825271 -196368393 + AluSx SINE Alu 1 310 -2 7236 169 24 22 chr1 85825271 85825395 -196368269 + L1PA15 LINE L1 5778 5900 -265 1087 155 0 0 chr1 85825396 85825564 -196368100 + AluSg/x SINE Alu 129 296 -16 1634 107 36 8 chr1 85825568 85825821 -196367843 + L1PA15 LINE L1 5888 6147 -18 4677 177 87 67 chr1 85825829 85828039 -196365625 + MER21-int LTR ERV1 1182 6146 -452 2368 153 81 2 chr1 85828148 85828567 -196365097 + LTR47A LTR ERVL 1 452 0 256 262 78 0 chr1 85828735 85828838 -196364826 + L1MC4a LINE L1 7197 7307 -501 2372 112 15 119 chr1 85828840 85829487 -196364177 - MER4E LTR ERV1 -9 757 1 1419 129 0 73 chr1 85829488 85829736 -196363928 - MER30 DNA MER1_type 0 230 1 301 299 19 9 chr1 85829744 85829851 -196363813 + L1MC4 LINE L1 7380 7487 -555 * 358 254 70 84 chr1 85829843 85830305 -196363359 + L1MC4 LINE L1 7311 7878 -164 213 229 0 0 chr1 85830330 85830378 -196363286 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 304 143 0 0 chr1 85830410 85830458 -196363206 + LTR9 LTR ERV1 12 59 -553 798 62 0 18 chr1 85830458 85830570 -196363094 + LTR10C LTR ERV1 1 110 -481 3203 135 8 2 chr1 85830570 85831067 -196362597 + LTR3b LTR ERVK 1 500 0 2796 103 27 8 chr1 85831067 85831537 -196362127 + LTR10C LTR ERV1 105 505 0 1295 103 20 0 chr1 85831537 85831732 -196361932 + LTR9 LTR ERV1 56 254 -358 235 236 14 28 chr1 85832825 85832897 -196360767 + (CCCCG)n Simple_repeat Simple_repeat 3 73 0 221 312 80 32 chr1 85834036 85834161 -196359503 - MIR SINE MIR -112 150 20 1351 151 163 4 chr1 85834338 85834596 -196359068 + AluSx SINE Alu 1 299 -3 456 306 66 5 chr1 85834755 85834951 -196358713 + MIR SINE MIR 2 209 -53 2418 90 0 0 chr1 85835016 85835317 -196358347 - AluSg SINE Alu -8 302 2 441 198 90 0 chr1 85835894 85836005 -196357659 - MER58B DNA MER1_type -1 340 220 799 152 7 58 chr1 85837476 85837647 -196356017 - FLAM_C SINE Alu 0 166 3 1882 142 38 3 chr1 85837717 85838005 -196355659 - AluSx SINE Alu -14 298 1 1934 148 10 0 chr1 85838097 85838388 -196355276 - AluSx SINE Alu -18 294 1 363 292 46 15 chr1 85838581 85838711 -196354953 + MIR SINE MIR 116 249 -13 1210 215 87 42 chr1 85838733 85839021 -196354643 - AluJo SINE Alu -9 303 3 2340 50 40 17 chr1 85839201 85839501 -196354163 + AluY SINE Alu 1 307 -4 772 177 8 0 chr1 85839940 85840070 -196353594 + FLAM_C SINE Alu 3 133 0 1710 182 7 0 chr1 85840093 85840362 -196353302 + AluJb SINE Alu 29 299 -13 1119 93 0 0 chr1 85842206 85842346 -196351318 - AluSg/x SINE Alu -39 271 132 2498 56 0 37 chr1 85842346 85842668 -196350996 - AluY SINE Alu -1 310 1 2011 136 13 13 chr1 85843231 85843533 -196350131 + AluSx SINE Alu 1 302 -10 2061 109 39 0 chr1 85843764 85844049 -196349615 + AluSx SINE Alu 1 296 -16 762 172 0 0 chr1 85844061 85844177 -196349487 + FLAM_C SINE Alu 1 116 -27 267 31 0 0 chr1 85844177 85844209 -196349455 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 360 43 0 0 chr1 85844353 85844399 -196349265 + (CA)n Simple_repeat Simple_repeat 2 47 0 29 47 0 0 chr1 85844909 85844952 -196348712 + AT_rich Low_complexity Low_complexity 1 43 0 351 303 98 34 chr1 85845059 85845293 -196348371 - L1ME4a LINE L1 -175 5946 5698 725 148 0 0 chr1 85845346 85845454 -196348210 + FLAM_C SINE Alu 1 108 -35 432 0 0 0 chr1 85845475 85845523 -196348141 + (TA)n Simple_repeat Simple_repeat 2 49 0 338 301 41 16 chr1 85845826 85845949 -196347715 - L3 LINE CR1 -72 1505 1380 21 0 0 0 chr1 85845989 85846010 -196347654 + AT_rich Low_complexity Low_complexity 1 21 0 2078 123 0 0 chr1 85846106 85846411 -196347253 - AluY SINE Alu 0 305 1 2218 80 10 27 chr1 85846425 85846724 -196346940 - AluSx SINE Alu -18 294 1 21 0 0 0 chr1 85846803 85846824 -196346840 + AT_rich Low_complexity Low_complexity 1 21 0 682 171 0 8 chr1 85846824 85846941 -196346723 - FLAM_C SINE Alu -17 116 1 271 356 116 54 chr1 85847081 85847602 -196346062 + L2 LINE L2 2717 3272 0 1525 174 44 24 chr1 85847717 85848010 -196345654 + AluJo SINE Alu 1 299 -13 28 29 0 0 chr1 85848049 85848084 -196345580 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 85848806 85848844 -196344820 + AT_rich Low_complexity Low_complexity 1 38 0 543 321 255 12 chr1 85848891 85849314 -196344350 + L3 LINE CR1 930 1455 -122 856 156 0 15 chr1 85849673 85849808 -196343856 + FLAM_C SINE Alu 1 133 -10 21 0 0 0 chr1 85850198 85850219 -196343445 + AT_rich Low_complexity Low_complexity 1 21 0 1407 129 117 57 chr1 85853187 85853398 -196340266 - MER44D DNA MER2_type -1885 606 409 1651 192 14 10 chr1 85853398 85853689 -196339975 + AluJb SINE Alu 1 292 -20 1407 129 117 57 chr1 85853689 85853794 -196339870 - MER44D DNA MER2_type -2082 409 1 419 250 124 1 chr1 85853802 85853936 -196339728 + MIR SINE MIR 45 192 -61 23 0 0 0 chr1 85854137 85854160 -196339504 + AT_rich Low_complexity Low_complexity 1 23 0 292 243 108 27 chr1 85854436 85854547 -196339117 - MIR SINE MIR -70 192 73 31 44 0 0 chr1 85854718 85854763 -196338901 + AT_rich Low_complexity Low_complexity 1 45 0 2108 140 0 0 chr1 85854792 85855092 -196338572 - AluJo SINE Alu -12 300 1 400 260 39 39 chr1 85855489 85855616 -196338048 - L2 LINE L2 -9 3304 3178 1535 211 0 18 chr1 85855697 85855977 -196337687 + AluJb SINE Alu 1 275 -37 379 236 31 84 chr1 85856320 85856511 -196337153 + L1MC4 LINE L1 7862 8042 0 1983 216 75 6 chr1 85856528 85857078 -196336586 + L1ME1 LINE L1 5574 6161 -5 929 206 106 0 chr1 85857316 85857515 -196336149 - MER58A DNA MER1_type -4 220 1 2371 108 0 0 chr1 85857897 85858203 -196335461 - AluSc SINE Alu -3 306 1 1232 149 0 0 chr1 85858944 85859118 -196334546 - AluSg/x SINE Alu -15 297 124 593 263 24 24 chr1 85859225 85859438 -196334226 + L1MC4 LINE L1 7690 7902 -140 243 0 0 0 chr1 85859979 85860006 -196333658 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 2092 132 7 0 chr1 85860257 85860572 -196333092 + AluSq SINE Alu 1 317 0 306 0 0 0 chr1 85860576 85860610 -196333054 + (TC)n Simple_repeat Simple_repeat 2 35 0 306 0 0 0 chr1 85860609 85860643 -196333021 + (TA)n Simple_repeat Simple_repeat 1 34 0 760 115 16 0 chr1 85861055 85861177 -196332487 + MSTA LTR MaLR 1 124 -304 436 259 165 58 chr1 85861941 85862443 -196331221 - L1ME LINE L1 -4983 1222 797 2025 131 40 37 chr1 85863274 85863648 -196330016 - THE1C LTR MaLR 0 375 1 588 95 24 0 chr1 85863830 85863914 -196329750 + AluS SINE Alu 4 89 -224 8103 178 52 14 chr1 85864015 85865127 -196328537 - L1MA9 LINE L1 -233 6079 5010 303 71 0 0 chr1 85865127 85865169 -196328495 + (TA)n Simple_repeat Simple_repeat 2 43 0 8103 178 52 14 chr1 85865169 85865846 -196327818 - L1MA9 LINE L1 -1302 5010 4360 1695 119 7 90 chr1 85865846 85866187 -196327477 - AluSx SINE Alu 0 315 1 8103 178 52 14 chr1 85866187 85866989 -196326675 - L1MA9 LINE L1 -1952 4360 3383 1199 180 3 109 chr1 85867139 85867423 -196326241 + AluJo SINE Alu 48 301 -11 208 277 0 0 chr1 85867461 85867508 -196326156 + (CAG)n Simple_repeat Simple_repeat 2 48 0 197 352 11 11 chr1 85867587 85867675 -196325989 - MIR SINE MIR -155 107 20 1518 180 71 3 chr1 85868228 85868511 -196325153 + AluJo SINE Alu 1 302 -10 305 194 19 28 chr1 85868511 85868619 -196325045 + G-rich Low_complexity Low_complexity 4 110 0 519 175 16 16 chr1 85868621 85868747 -196324917 + A-rich Low_complexity Low_complexity 1 126 0 323 357 1 11 chr1 85868960 85869086 -196324578 - MIR SINE MIR -82 126 3 241 306 82 0 chr1 85869945 85870030 -196323634 - MIR SINE MIR -2 260 169 363 53 0 0 chr1 85870135 85870192 -196323472 - L1 LINE L1 -1433 4713 4657 1086 265 60 9 chr1 85870391 85870723 -196322941 - MER50-int LTR ERV1 -843 4028 3680 2250 120 0 7 chr1 85870729 85871038 -196322626 + AluSx SINE Alu 2 308 -4 1204 166 85 94 chr1 85871045 85871340 -196322324 - MER50-int LTR ERV1 -2239 4092 3796 1743 176 30 3 chr1 85871340 85871642 -196322022 + AluJo SINE Alu 1 310 -2 1204 166 85 94 chr1 85871642 85871923 -196321741 - MER50-int LTR ERV1 -2535 3796 3499 466 286 28 32 chr1 85872166 85872409 -196321255 - MER50-int LTR ERV1 -2550 4184 2337 364 155 25 42 chr1 85872427 85872536 -196321128 - MER50-int LTR ERV1 -2509 3838 2409 1239 154 38 48 chr1 85872639 85873010 -196320654 - MER50-int LTR ERV1 -6580 1540 1174 22 56 0 0 chr1 85873541 85873577 -196320087 + AT_rich Low_complexity Low_complexity 1 36 0 226 264 224 0 chr1 85875237 85875362 -196318302 - MIR SINE MIR -63 199 47 642 192 51 26 chr1 85875860 85876016 -196317648 - MIR SINE MIR -19 243 84 2246 108 0 10 chr1 85876150 85876456 -196317208 + AluSx SINE Alu 1 303 -9 683 197 0 7 chr1 85876735 85876877 -196316787 + MER20 DNA MER1_type 78 218 -1 2353 106 0 0 chr1 85877248 85877550 -196316114 + AluSx SINE Alu 5 306 -6 25 0 0 0 chr1 85878201 85878226 -196315438 + AT_rich Low_complexity Low_complexity 1 25 0 769 236 55 5 chr1 85878448 85878647 -196315017 - MER58A DNA MER1_type -15 209 1 10405 218 38 17 chr1 85879021 85881597 -196312067 + L1 LINE L1 2380 5009 -1137 11039 80 5 0 chr1 85881876 85884063 -196309601 - L1PA7 LINE L1 0 6154 3964 1407 134 9 5 chr1 85884182 85884399 -196309265 - Tigger3(Golem) DNA MER2_type -303 2726 2509 923 185 0 77 chr1 85884405 85884600 -196309064 - Tigger3(Golem) DNA MER2_type -2848 181 2 295 298 9 79 chr1 85885604 85885718 -196307946 + MIR3 SINE MIR 83 188 -20 334 250 106 19 chr1 85885789 85885893 -196307771 - MIR3 SINE MIR -51 157 45 2252 85 0 3 chr1 85886642 85886924 -196306740 + AluSq SINE Alu 1 281 -32 228 35 0 0 chr1 85886924 85886953 -196306711 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 281 303 76 42 chr1 85887488 85887607 -196306057 + MIR SINE MIR 22 144 -118 1802 164 0 7 chr1 85887730 85888023 -196305641 - AluJb SINE Alu -21 291 1 912 129 0 0 chr1 85889472 85889596 -196304068 + AluSg/x SINE Alu 172 295 -15 2361 108 0 0 chr1 85890337 85890643 -196303021 + AluSc SINE Alu 1 306 -3 1020 206 106 0 chr1 85891025 85891224 -196302440 + MER58A DNA MER1_type 1 220 -4 2227 216 75 6 chr1 85891464 85892014 -196301650 - L1ME1 LINE L1 -5 6161 5574 456 230 31 84 chr1 85892031 85892222 -196301442 - L1MC4 LINE L1 0 8042 7862 1503 211 0 18 chr1 85892565 85892845 -196300819 - AluJb SINE Alu -37 275 1 429 259 8 38 chr1 85892926 85893057 -196300607 + L2 LINE L2 3178 3304 -9 1894 157 3 3 chr1 85893454 85893747 -196299917 + AluJo SINE Alu 1 293 -19 1969 138 0 36 chr1 85893934 85894239 -196299425 - AluSx SINE Alu -18 294 1 1434 190 43 0 chr1 85894430 85894683 -196298981 - AluJo SINE Alu -9 303 40 392 172 92 0 chr1 85894711 85894798 -196298866 - MER5C DNA MER1_type 0 324 230 447 171 181 0 chr1 85894809 85894914 -196298750 - MER5C DNA MER1_type -200 124 1 585 277 129 42 chr1 85894914 85895441 -196298223 - L1MEd LINE L1 -5024 1095 523 305 190 0 0 chr1 85895475 85895533 -196298131 + Alu SINE Alu 245 302 0 1919 168 3 0 chr1 85896233 85896536 -196297128 - AluJb SINE Alu -8 304 1 2164 105 7 13 chr1 85896643 85896948 -196296716 - AluSg SINE Alu -7 303 1 7802 128 19 8 chr1 85897088 85898268 -196295396 + L1P LINE L1 11 1202 -4944 * 12786 57 11 0 chr1 85898267 85900182 -196293482 + L1P2 LINE L1 3745 5677 -477 2171 155 101 56 chr1 85900182 85900488 -196293176 - MER21A LTR ERV1 -71 860 526 2054 124 0 31 chr1 85900488 85900811 -196292853 - AluSq SINE Alu 0 313 1 2171 155 101 56 chr1 85900811 85900947 -196292717 - MER21A LTR ERV1 -405 526 398 250 191 0 0 chr1 85900947 85900994 -196292670 + LTR30 LTR ERV1 1 47 -675 1686 91 162 234 chr1 85900994 85901651 -196292013 + LTR12 LTR ERV1 48 581 -133 1096 173 24 9 chr1 85901651 85901898 -196291766 - MER21B LTR ERV1 -548 315 32 761 249 0 11 chr1 85902093 85902270 -196291394 - AluSp SINE Alu -4 309 135 1085 189 154 0 chr1 85902422 85902655 -196291009 - AluSx SINE Alu -43 269 1 1196 124 38 52 chr1 85902760 85902969 -196290695 + AluSg/x SINE Alu 94 299 -13 833 132 110 0 chr1 85902969 85903105 -196290559 + FRAM SINE Alu 1 40 0 1057 253 70 7 chr1 85903105 85903405 -196290259 + L1MD3 LINE L1 7592 7910 -85 875 137 0 0 chr1 85903455 85903579 -196290085 + FLAM_C SINE Alu 1 124 -19 293 279 115 0 chr1 85904515 85904619 -196289045 - MIR3 SINE MIR -8 200 85 1654 221 147 94 chr1 85906316 85906794 -196286870 - MER21B LTR ERV1 -124 739 211 1616 161 91 78 chr1 85906794 85907179 -196286485 - MLT1B LTR MaLR 0 390 1 1654 221 147 94 chr1 85907179 85907402 -196286262 - MER21B LTR ERV1 -652 211 1 675 210 115 13 chr1 85907646 85907803 -196285861 + FAM SINE Alu 1 173 -2 2088 108 17 3 chr1 85907806 85908103 -196285561 + AluSq SINE Alu 3 303 -10 276 100 0 0 chr1 85908103 85908143 -196285521 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 243 146 0 0 chr1 85908181 85908222 -196285442 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 390 255 73 10 chr1 85908990 85909110 -196284554 - LTR37A LTR ERV1 -60 408 297 2458 86 3 0 chr1 85909110 85909414 -196284250 + AluSp SINE Alu 1 305 -8 390 255 73 10 chr1 85909414 85909445 -196284219 - LTR37A LTR ERV1 -171 297 269 2316 132 15 29 chr1 85909445 85909787 -196283877 + MER1B DNA MER1_type 1 337 0 390 255 73 10 chr1 85909787 85909836 -196283828 - LTR37A LTR ERV1 -199 269 198 192 77 0 0 chr1 85909865 85909891 -196283773 + (T)n Simple_repeat Simple_repeat 1 26 0 1174 273 95 75 chr1 85910267 85910753 -196282911 - MER31-int LTR ERV1 -832 4104 3594 1789 193 0 0 chr1 85910753 85911054 -196282610 + AluJb SINE Alu 1 301 -11 1174 273 95 75 chr1 85911054 85911379 -196282285 - MER31-int LTR ERV1 -1342 3594 3277 1646 137 76 12 chr1 85911537 85911855 -196281809 + THE1C LTR MaLR 1 375 0 647 237 130 55 chr1 85912086 85912272 -196281392 - L1MC4a LINE L1 -1853 5955 5734 2008 125 0 30 chr1 85912272 85912593 -196281071 - AluSx SINE Alu 0 312 1 647 237 130 55 chr1 85912593 85912712 -196280952 - L1MC4a LINE L1 -2074 5734 5625 1587 179 0 38 chr1 85912734 85913053 -196280611 + AluJo SINE Alu 1 307 -5 370 274 12 0 chr1 85913087 85913171 -196280493 + L2 LINE L2 3225 3309 -4 274 263 153 50 chr1 85913546 85913703 -196279961 + L1MEd LINE L1 845 984 -5388 2592 121 72 15 chr1 85913703 85914108 -196279556 + MSTA LTR MaLR 1 428 0 274 263 153 50 chr1 85914108 85914150 -196279514 + L1MEd LINE L1 984 1020 -5352 1328 187 61 58 chr1 85914150 85914493 -196279171 - MER2 DNA MER2_type 0 344 1 274 263 153 50 chr1 85914493 85914573 -196279091 + L1MEd LINE L1 1020 1154 -5218 476 259 182 7 chr1 85914612 85914755 -196278909 - MER5A DNA MER1_type -1 188 21 361 292 72 82 chr1 85914782 85914887 -196278777 + L1MEd LINE L1 1267 1372 -5000 2391 87 7 7 chr1 85914887 85915196 -196278468 + AluSx SINE Alu 1 309 -3 361 292 72 82 chr1 85915196 85915250 -196278414 + L1MEd LINE L1 1372 1425 -4947 1617 288 49 77 chr1 85915250 85915381 -196278283 - MER115 DNA AcHobo -1 692 559 1852 150 0 27 chr1 85915381 85915681 -196277983 + AluJb SINE Alu 5 296 -16 2232 104 6 25 chr1 85915682 85915999 -196277665 + AluSq SINE Alu 1 311 -2 1617 288 49 77 chr1 85915999 85916014 -196277650 - MER115 DNA AcHobo -134 559 545 1735 177 11 0 chr1 85916014 85916297 -196277367 + AluJb SINE Alu 1 286 -26 222 37 0 0 chr1 85916298 85916325 -196277339 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 1617 288 49 77 chr1 85916325 85916885 -196276779 - MER115 DNA AcHobo -147 546 1 361 292 72 82 chr1 85916885 85916919 -196276745 + L1MEd LINE L1 1425 1459 -4913 269 303 8 8 chr1 85916929 85917051 -196276613 + L1MEd LINE L1 1367 1488 -4896 387 0 0 0 chr1 85917135 85917178 -196276486 + (TA)n Simple_repeat Simple_repeat 1 43 0 1529 163 70 42 chr1 85917318 85917649 -196276015 + THE1C LTR MaLR 1 340 -35 2095 126 17 0 chr1 85917650 85917951 -196275713 - AluSx SINE Alu -6 306 1 2300 102 0 0 chr1 85918182 85918485 -196275179 + AluY SINE Alu 1 303 -8 352 313 49 49 chr1 85918642 85918866 -196274798 + L1MEd LINE L1 2204 2427 -4136 269 317 55 15 chr1 85918896 85919095 -196274569 + L1MEd LINE L1 2446 2652 -3730 1325 165 73 4 chr1 85919120 85919380 -196274284 + AluJo SINE Alu 21 298 -14 845 193 7 13 chr1 85919380 85919530 -196274134 + AluJo/FRAM SINE Alu 134 282 -30 823 128 0 16 chr1 85919636 85919761 -196273903 + FLAM_C SINE Alu 21 143 0 257 247 58 65 chr1 85919767 85919921 -196273743 + L1MEd LINE L1 2681 2833 -3549 39213 75 11 11 chr1 85920127 85926273 -196267391 + L1PA4 LINE L1 11 6153 -2 5106 73 27 9 chr1 85926311 85926970 -196266694 + L1PA6 LINE L1 5478 6148 -6 203 162 0 0 chr1 85927010 85927047 -196266617 + (TGG)n Simple_repeat Simple_repeat 3 39 0 254 179 0 54 chr1 85927139 85927195 -196266469 - L2 LINE L2 -4 3309 3257 1444 181 3 40 chr1 85927247 85927474 -196266190 - AluJo SINE Alu -19 293 78 2352 171 119 103 chr1 85927474 85927558 -196266106 + LTR8 LTR ERV1 1 82 -609 2141 59 33 0 chr1 85927558 85927831 -196265833 - AluY SINE Alu -20 291 10 2352 171 119 103 chr1 85927831 85928426 -196265238 + LTR8 LTR ERV1 82 691 0 1444 181 3 40 chr1 85928426 85928502 -196265162 - AluJo SINE Alu -234 78 1 21 0 0 0 chr1 85928532 85928553 -196265111 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 85929452 85929475 -196264189 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 85929747 85929767 -196263897 + (TTG)n Simple_repeat Simple_repeat 2 21 0 603 165 52 0 chr1 85929771 85929886 -196263778 - AluJb SINE Alu -20 292 172 1610 186 53 7 chr1 85930834 85931119 -196262545 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 85932876 85932897 -196260767 + AT_rich Low_complexity Low_complexity 1 21 0 1315 150 154 0 chr1 85933240 85933473 -196260191 - AluSx SINE Alu -43 269 1 783 180 0 43 chr1 85933481 85933620 -196260044 - FLAM_C SINE Alu 0 133 1 283 252 70 17 chr1 85935260 85935375 -196258289 - MER58 DNA MER1_type -74 267 147 1941 106 57 0 chr1 85935378 85935642 -196258022 - AluSg SINE Alu -31 279 1 1266 127 6 0 chr1 85935754 85935927 -196257737 - AluSx SINE Alu -138 174 1 34 42 0 0 chr1 85937290 85937338 -196256326 + AT_rich Low_complexity Low_complexity 1 48 0 261 0 0 0 chr1 85937712 85937741 -196255923 + (T)n Simple_repeat Simple_repeat 1 29 0 1668 125 49 24 chr1 85937878 85938165 -196255499 - AluSg SINE Alu -16 294 1 1225 218 48 31 chr1 85938232 85938521 -196255143 - AluJo SINE Alu -8 294 1 1732 135 13 45 chr1 85940182 85940493 -196253171 + AluJb SINE Alu 1 301 -11 224 232 32 97 chr1 85940595 85940662 -196253002 + L2 LINE L2 1913 1983 -1331 751 156 23 8 chr1 85940662 85940790 -196252874 - FLAM_C SINE Alu -3 130 1 224 232 32 97 chr1 85940790 85940877 -196252787 + L2 LINE L2 1983 2057 -1257 236 277 61 68 chr1 85940966 85941090 -196252574 + L2 LINE L2 2243 2367 -947 1987 148 3 7 chr1 85941090 85941388 -196252276 - AluJo SINE Alu -15 297 1 236 277 61 68 chr1 85941388 85941411 -196252253 + L2 LINE L2 2367 2389 -925 264 308 39 0 chr1 85941778 85941856 -196251808 - MIR SINE MIR -74 188 108 226 316 71 112 chr1 85941893 85942162 -196251502 - L2 LINE L2 -90 3182 2925 561 333 26 13 chr1 85942300 85942531 -196251133 - L2 LINE L2 -862 2452 2219 407 288 107 9 chr1 85942660 85942875 -196250789 + LTR33 LTR ERVL 275 510 -11 380 344 115 29 chr1 85942876 85943356 -196250308 - L2 LINE L2 -525 2789 2269 765 219 78 5 chr1 85943357 85943549 -196250115 + MER3 DNA MER1_type 4 209 0 951 207 59 23 chr1 85943554 85943810 -196249854 + MER58B DNA MER1_type 66 330 -11 2133 129 3 13 chr1 85943813 85944116 -196249548 + AluSq SINE Alu 1 300 -13 1704 173 18 4 chr1 85944127 85944399 -196249265 + AluJo SINE Alu 6 281 -31 1851 160 17 3 chr1 85944417 85944717 -196248947 + AluJo SINE Alu 1 304 -8 184 309 62 31 chr1 85944778 85944940 -196248724 - L2 LINE L2 -1077 2237 2071 191 340 41 10 chr1 85945013 85945110 -196248554 - MIR SINE MIR -10 252 153 2445 143 33 14 chr1 85945256 85945676 -196247988 - MSTC LTR MaLR 0 428 1 197 355 0 0 chr1 85945704 85945766 -196247898 - L2 LINE L2 -1409 1905 1844 2296 110 7 0 chr1 85945867 85946176 -196247488 + AluSq SINE Alu 1 311 -2 22 35 0 0 chr1 85946762 85946791 -196246873 + AT_rich Low_complexity Low_complexity 1 29 0 236 252 47 47 chr1 85946848 85946955 -196246709 - L1ME LINE L1 -501 5661 5555 2324 104 3 7 chr1 85947030 85947338 -196246326 - AluSg SINE Alu -3 307 1 2285 113 7 0 chr1 85947353 85947655 -196246009 - AluSg SINE Alu -6 304 1 288 300 46 8 chr1 85947746 85947876 -196245788 - L1ME LINE L1 -373 5748 5614 2146 139 3 0 chr1 85947907 85948217 -196245447 - AluSx SINE Alu -1 311 1 235 288 45 18 chr1 85948228 85948339 -196245325 - L1ME LINE L1 -516 5605 5492 338 256 133 44 chr1 85948467 85948737 -196244927 - L1ME LINE L1 -613 5551 5258 2649 51 0 0 chr1 85948766 85949077 -196244587 - AluY SINE Alu 0 311 1 476 230 52 99 chr1 85949128 85949380 -196244284 - L1ME LINE L1 -1351 4795 4556 21 95 0 0 chr1 85949445 85949508 -196244156 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr1 85949832 85949856 -196243808 + AT_rich Low_complexity Low_complexity 1 24 0 6101 146 23 27 chr1 85949990 85951204 -196242460 + Ricksha_b DNA DNA 91 1654 -9 1103 197 97 76 chr1 85951460 85951749 -196241915 - AluJb SINE Alu -5 297 3 22 0 0 0 chr1 85951864 85951886 -196241778 + AT_rich Low_complexity Low_complexity 1 22 0 2102 115 0 56 chr1 85952160 85952481 -196241183 - AluSx SINE Alu -9 303 1 1774 138 12 75 chr1 85952762 85953081 -196240583 - AluSx SINE Alu -13 299 1 2079 126 0 14 chr1 85953380 85953706 -196239958 - AluSx SINE Alu 0 322 1 22 94 0 0 chr1 85953714 85953778 -196239886 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr1 85954593 85954615 -196239049 + (TTG)n Simple_repeat Simple_repeat 3 24 0 382 244 0 0 chr1 85954629 85954715 -196238949 - MLT1K LTR MaLR -13 575 490 2540 152 104 20 chr1 85954741 85954942 -196238722 - MER67A LTR ERV1 0 543 360 2225 99 0 10 chr1 85954942 85955244 -196238420 + AluSc SINE Alu 1 299 -10 2540 152 104 20 chr1 85955244 85955543 -196238121 - MER67A LTR ERV1 -183 360 1 258 359 26 26 chr1 85955606 85955798 -196237866 - MLT1K LTR MaLR -236 352 161 527 232 133 20 chr1 85955913 85956064 -196237600 + MIR SINE MIR 2 169 -93 * 578 271 8 0 chr1 85956062 85956195 -196237469 - L2 LINE L2 -231 3082 2949 770 188 8 0 chr1 85956260 85956388 -196237276 + FLAM_A SINE Alu 1 129 -4 263 348 80 29 chr1 85956424 85956562 -196237102 + MIR SINE MIR 20 164 -98 1689 178 0 44 chr1 85956702 85957000 -196236664 + AluJo SINE Alu 3 287 -25 23 0 0 0 chr1 85957672 85957695 -196235969 + AT_rich Low_complexity Low_complexity 1 23 0 448 218 0 11 chr1 85957759 85957846 -196235818 + L2 LINE L2 3195 3280 -33 1706 158 75 0 chr1 85958279 85958558 -196235106 + AluSg SINE Alu 1 300 -10 2151 140 0 10 chr1 85959150 85959457 -196234207 - AluSq SINE Alu -9 304 1 652 234 8 0 chr1 85959486 85959610 -196234054 - FLAM_A SINE Alu -8 125 1 833 179 29 0 chr1 85959713 85959886 -196233778 + L1M3 LINE L1 5286 5463 -717 1433 271 61 36 chr1 85960444 85960950 -196232714 + L2 LINE L2 2447 2965 -349 866 262 22 13 chr1 85960898 85961123 -196232541 + MIR SINE MIR 32 258 -4 * 193 333 92 36 chr1 85961159 85961283 -196232381 + L2 LINE L2 2979 3119 -194 2362 93 0 13 chr1 85961283 85961596 -196232068 - AluY SINE Alu -2 309 1 193 333 92 36 chr1 85961596 85961666 -196231998 + L2 LINE L2 3119 3184 -129 1790 151 11 4 chr1 85961740 85962018 -196231646 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr1 85962018 85962038 -196231626 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 382 317 83 33 chr1 85962054 85962174 -196231490 + L2 LINE L2 3147 3272 0 2159 123 0 16 chr1 85962230 85962546 -196231118 - AluSx SINE Alu -1 311 1 191 286 125 0 chr1 85962801 85962857 -196230807 + MER5A DNA MER1_type 7 69 -120 3551 37 0 0 chr1 85962858 85963313 -196230351 - L1P LINE L1 -2503 3643 3189 6483 22 0 0 chr1 85963313 85964136 -196229528 + L1P LINE L1 2366 3188 -2958 1588 200 7 10 chr1 85964151 85964441 -196229223 - AluJb SINE Alu -23 289 1 189 319 0 0 chr1 85964443 85964490 -196229174 + MER5A DNA MER1_type 63 109 -80 2407 65 0 26 chr1 85964530 85964840 -196228824 + AluY SINE Alu 1 302 -9 26 50 0 0 chr1 85965119 85965159 -196228505 + AT_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr1 85965349 85965375 -196228289 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1419 239 75 14 chr1 85965461 85965901 -196227763 - MLT1C LTR MaLR 0 467 1 18782 98 12 4 chr1 85965983 85969562 -196224102 - L1PA8 LINE L1 -4 6168 2577 5730 100 3 22 chr1 85969562 85970466 -196223198 + L1PA8 LINE L1 1681 2567 -3579 4982 137 13 4 chr1 85970517 85971335 -196222329 + L1PA16 LINE L1 5323 6148 -18 37090 81 9 2 chr1 85971356 85977465 -196216199 + L1PA5 LINE L1 2 6153 -1 514 296 197 22 chr1 85978049 85978414 -196215250 + L2 LINE L2 1469 1897 -1417 268 314 64 59 chr1 85978584 85978804 -196214860 + LTR16A1 LTR ERVL 166 386 -71 1394 181 0 0 chr1 85978817 85979043 -196214621 - AluJb SINE Alu 0 312 87 381 228 0 0 chr1 85979043 85979122 -196214542 + LTR16A1 LTR ERVL 379 457 0 1196 357 58 26 chr1 85979134 85979532 -196214132 + L2 LINE L2 1908 2292 -1022 1554 185 115 15 chr1 85979532 85979862 -196213802 + MLT1A1 LTR MaLR 1 363 -2 1196 357 58 26 chr1 85979862 85979917 -196213747 + L2 LINE L2 2292 2344 -970 2224 106 7 3 chr1 85979917 85980218 -196213446 - AluSx SINE Alu -10 302 1 1196 357 58 26 chr1 85980218 85980558 -196213106 + L2 LINE L2 2344 2727 -587 2302 192 35 27 chr1 85980558 85981038 -196212626 - MLT1D LTR MaLR 0 505 22 270 321 68 87 chr1 85981063 85981427 -196212237 + L2 LINE L2 2724 3078 -194 23 68 0 0 chr1 85981639 85981683 -196211981 + AT_rich Low_complexity Low_complexity 1 44 0 2230 111 0 0 chr1 85981744 85982033 -196211631 - AluSx SINE Alu -11 301 13 7740 21 1 0 chr1 85982140 85983209 -196210455 + L1PA3 LINE L1 5083 6152 -3 189 0 0 0 chr1 85983212 85983233 -196210431 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 262 331 57 85 chr1 85983266 85983583 -196210081 - L2 LINE L2 -31 3241 2934 231 36 0 0 chr1 85983684 85983712 -196209952 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 1559 220 20 0 chr1 85983723 85984028 -196209636 - AluJo SINE Alu -1 311 1 195 290 155 58 chr1 85984100 85984307 -196209357 - L2 LINE L2 -457 2857 2631 5485 71 28 21 chr1 85984434 85984916 -196208748 - MER4E LTR ERV1 0 766 276 8007 61 5 3 chr1 85984916 85985921 -196207743 + LTR13 LTR ERVK 1 1007 0 5485 71 28 21 chr1 85985921 85986199 -196207465 - MER4E LTR ERV1 -490 276 1 2369 81 3 0 chr1 85986344 85986641 -196207023 - AluSp SINE Alu -15 298 1 24 32 0 0 chr1 85986837 85986868 -196206796 + AT_rich Low_complexity Low_complexity 1 31 0 1930 150 3 0 chr1 85986868 85987154 -196206510 - AluJb SINE Alu -23 289 3 1963 189 20 20 chr1 85987320 85987716 -196205948 - MSTD LTR MaLR 0 396 1 6508 212 64 51 chr1 85987717 85989428 -196204236 - MSTD-int LTR MaLR -1 1734 2 1810 178 87 16 chr1 85989430 85989800 -196203864 - MSTD LTR MaLR 0 396 1 367 303 49 8 chr1 85989800 85989922 -196203742 - MIR SINE MIR -60 202 76 1812 197 29 74 chr1 85990055 85990502 -196203162 - MSTB2 LTR MaLR -16 441 15 1505 174 82 4 chr1 85991008 85991278 -196202386 + AluJb SINE Alu 1 291 -21 2260 112 0 0 chr1 85991475 85991762 -196201902 - AluSx SINE Alu -25 287 1 5261 236 36 16 chr1 85992198 85993251 -196200413 - L1MEc LINE L1 -2476 3739 2708 216 0 0 0 chr1 85993251 85993275 -196200389 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5261 236 36 16 chr1 85993275 85993932 -196199732 - L1MEc LINE L1 -3507 2708 2021 1964 153 7 0 chr1 85993932 85994240 -196199424 - AluSx SINE Alu -2 310 1 5261 236 36 16 chr1 85994240 85994383 -196199281 - L1MEc LINE L1 -4194 2021 1882 4571 161 27 14 chr1 85994393 85995366 -196198298 - L1MB8 LINE L1 -9 6169 5185 2170 117 0 0 chr1 85995582 85995895 -196197769 - AluSx SINE Alu 0 313 1 940 218 54 28 chr1 85995895 85996747 -196196917 - L1MC4 LINE L1 -534 7508 6487 1669 217 0 0 chr1 85997564 85997868 -196195796 - AluJo SINE Alu -8 304 1 1579 178 27 132 chr1 85997868 85998390 -196195274 - MLT1C LTR MaLR 0 467 1 35546 101 12 10 chr1 85998820 86004947 -196188717 - L1PA7 LINE L1 -2 6152 11 22 56 0 0 chr1 86005573 86005609 -196188055 + AT_rich Low_complexity Low_complexity 1 36 0 724 167 0 0 chr1 86005836 86005950 -196187714 - LTR40a LTR ERVL 0 519 406 830 253 80 95 chr1 86005950 86006350 -196187314 + L2 LINE L2 1668 2061 -1253 2143 250 58 39 chr1 86006360 86007312 -196186352 - L1ME3A LINE L1 0 6170 5204 1005 291 111 24 chr1 86007390 86007768 -196185896 + LTR16C LTR ERVL 71 481 -10 271 323 8 24 chr1 86007775 86007899 -196185765 - L1ME3A LINE L1 -957 5189 5068 507 229 55 0 chr1 86007974 86008083 -196185581 - MER74A LTR ERVL -79 479 365 1011 274 40 20 chr1 86008298 86008699 -196184965 - L1ME3A LINE L1 -1069 5077 4669 1595 165 47 18 chr1 86008714 86008993 -196184671 - AluJb SINE Alu -24 288 2 977 121 0 0 chr1 86009229 86009361 -196184303 + AluSq/x SINE Alu 1 132 -180 34 0 0 0 chr1 86009503 86009537 -196184127 + AT_rich Low_complexity Low_complexity 1 34 0 2013 240 119 25 chr1 86010170 86010975 -196182689 - L1MC4 LINE L1 0 8042 7162 2314 126 25 3 chr1 86011104 86011460 -196182204 + THE1B LTR MaLR 1 364 0 10081 102 54 9 chr1 86011460 86012972 -196180692 + THE1B-int LTR MaLR 1 1580 0 2278 117 34 3 chr1 86012974 86013325 -196180339 + THE1B LTR MaLR 3 364 0 1662 171 31 24 chr1 86013899 86014191 -196179473 + AluJb SINE Alu 1 294 -18 1088 166 8 85 chr1 86014234 86014469 -196179195 + MER20 DNA MER1_type 1 217 -2 187 265 86 115 chr1 86014482 86014761 -196178903 + L2 LINE L2 2815 3085 -187 429 201 153 62 chr1 86015236 86015380 -196178284 + MER5B DNA MER1_type 1 157 -21 301 350 248 6 chr1 86015383 86015734 -196177930 - L3 LINE CR1 -561 1016 581 391 279 52 37 chr1 86015787 86015923 -196177741 - MIR3 SINE MIR -63 145 8 255 277 148 10 chr1 86016065 86016166 -196177498 - L2 LINE L2 -6 3307 3193 239 292 58 33 chr1 86016178 86016298 -196177366 - L3 LINE CR1 -1208 369 247 23 0 0 0 chr1 86016549 86016572 -196177092 + AT_rich Low_complexity Low_complexity 1 23 0 1775 163 16 49 chr1 86016845 86017231 -196176433 - THE1C LTR MaLR -2 373 1 324 320 91 43 chr1 86017321 86017671 -196175993 + L1ME LINE L1 5351 5717 -404 8744 141 30 23 chr1 86017806 86019266 -196174398 + Tigger4(Zombi) DNA MER2_type -1 1468 -1263 5490 114 14 16 chr1 86019271 86020128 -196173536 - L1PA14 LINE L1 -3 6158 5304 7629 119 21 59 chr1 86020135 86020201 -196173463 + Tigger4(Zombi) DNA MER2_type 1448 1515 -1216 1485 205 21 0 chr1 86020201 86020484 -196173180 - AluJo SINE Alu -22 290 2 7629 119 21 59 chr1 86020484 86020756 -196172908 + Tigger4(Zombi) DNA MER2_type 1515 1796 -935 1839 169 0 3 chr1 86020756 86021057 -196172607 - AluSx SINE Alu -12 300 1 7629 119 21 59 chr1 86021057 86022052 -196171612 + Tigger4(Zombi) DNA MER2_type 1796 2731 0 21 36 0 0 chr1 86023158 86023186 -196170478 + AT_rich Low_complexity Low_complexity 1 28 0 327 266 106 0 chr1 86023586 86023680 -196169984 + L2 LINE L2 3167 3270 -2 391 94 0 0 chr1 86024331 86024384 -196169280 - Tigger4(Zombi) DNA MER2_type -1171 1560 1508 1648 153 6 81 chr1 86024386 86024706 -196168958 + AluJo SINE Alu 2 297 -15 257 263 12 0 chr1 86025287 86025367 -196168297 - MER103 DNA DNA -69 97 17 21 36 0 0 chr1 86026599 86026627 -196167037 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr1 86026807 86026853 -196166811 + AT_rich Low_complexity Low_complexity 1 46 0 283 183 204 43 chr1 86026898 86026991 -196166673 + MIR3 SINE MIR 65 155 -53 1121 178 4 61 chr1 86028476 86028706 -196164958 + AluJo SINE Alu 66 282 -30 1815 155 3 31 chr1 86028858 86029175 -196164489 - AluJb SINE Alu -2 310 3 21 0 0 0 chr1 86030076 86030097 -196163567 + AT_rich Low_complexity Low_complexity 1 21 0 635 146 152 80 chr1 86030319 86030470 -196163194 + MER20 DNA MER1_type 2 163 -56 239 286 91 0 chr1 86030494 86030571 -196163093 + MER20 DNA MER1_type 136 219 0 345 274 0 0 chr1 86030810 86030894 -196162770 + L1MC4 LINE L1 6612 6695 -1347 270 0 0 0 chr1 86030894 86030924 -196162740 + (TG)n Simple_repeat Simple_repeat 2 31 0 184 289 0 0 chr1 86030938 86030976 -196162688 - L2 LINE L2 -678 2636 2599 276 100 56 33 chr1 86031048 86031138 -196162526 + (TA)n Simple_repeat Simple_repeat 1 92 0 216 0 0 0 chr1 86031182 86031206 -196162458 + (TG)n Simple_repeat Simple_repeat 2 25 0 266 213 0 13 chr1 86031301 86031376 -196162288 + (TA)n Simple_repeat Simple_repeat 1 74 0 405 55 109 18 chr1 86031414 86031579 -196162085 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 54 0 0 chr1 86031595 86031632 -196162032 + AT_rich Low_complexity Low_complexity 1 37 0 632 49 98 0 chr1 86031645 86031809 -196161855 + (TA)n Simple_repeat Simple_repeat 1 180 0 397 53 81 49 chr1 86031895 86032181 -196161483 + (TA)n Simple_repeat Simple_repeat 1 295 0 306 144 84 12 chr1 86032186 86032353 -196161311 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 305 144 89 0 chr1 86032399 86032545 -196161119 + (TATAG)n Simple_repeat Simple_repeat 2 160 0 437 46 81 46 chr1 86032601 86032774 -196160890 + (TA)n Simple_repeat Simple_repeat 2 180 0 477 116 73 0 chr1 86032833 86032997 -196160667 + (TA)n Simple_repeat Simple_repeat 1 176 0 245 29 29 0 chr1 86033060 86033094 -196160570 + (TA)n Simple_repeat Simple_repeat 1 35 0 192 227 387 0 chr1 86033166 86033241 -196160423 + L2 LINE L2 3202 3305 -8 182 159 227 0 chr1 86033248 86033292 -196160372 - MIR SINE MIR -73 135 82 1710 140 70 39 chr1 86033336 86033693 -196159971 + THE1C LTR MaLR 8 375 0 472 286 96 0 chr1 86033802 86033955 -196159709 - MIR SINE MIR -40 168 23 210 37 0 0 chr1 86034034 86034061 -196159603 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 189 196 0 0 chr1 86034308 86034359 -196159305 + (TTA)n Simple_repeat Simple_repeat 1 51 0 23 0 0 0 chr1 86034847 86034870 -196158794 + AT_rich Low_complexity Low_complexity 1 23 0 492 172 0 0 chr1 86034871 86034958 -196158706 - L1MA5A LINE L1 -17 6280 6194 1291 72 0 0 chr1 86035131 86035298 -196158366 - AluY SINE Alu -11 300 134 24 0 0 0 chr1 86036906 86036930 -196156734 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr1 86037523 86037556 -196156108 + AT_rich Low_complexity Low_complexity 1 33 0 1920 158 3 0 chr1 86037680 86037990 -196155674 - AluJb SINE Alu -1 311 1 1427 245 87 24 chr1 86038167 86038604 -196155060 + MLT2B1 LTR ERVL 3 356 -41 264 77 0 0 chr1 86038616 86038655 -196155009 + (TC)n Simple_repeat Simple_repeat 1 39 0 225 57 114 0 chr1 86038671 86038706 -196154958 + MLT2B1 LTR ERVL 482 520 0 1001 231 19 9 chr1 86038717 86038933 -196154731 + ERVL-B1 LTR ERVL 174 391 -5373 652 241 49 97 chr1 86039060 86039409 -196154255 + Charlie4a DNA MER1_type 1 332 -176 4399 188 89 11 chr1 86039444 86040629 -196153035 + ERVL-B1 LTR ERVL 378 1729 -4035 * 8764 162 40 9 chr1 86040626 86042154 -196151510 + ERVL-B1 LTR ERVL 4183 5757 -7 1330 246 150 20 chr1 86042154 86042574 -196151090 + MLT2B1 LTR ERVL 1 487 -33 470 17 17 0 chr1 86042574 86042633 -196151031 + (CA)n Simple_repeat Simple_repeat 2 61 0 1330 246 150 20 chr1 86042633 86042672 -196150992 + MLT2B1 LTR ERVL 487 520 0 726 109 0 18 chr1 86042679 86042789 -196150875 - AluSp/q SINE Alu -8 305 198 32 81 0 0 chr1 86042853 86042927 -196150737 + AT_rich Low_complexity Low_complexity 1 74 0 268 243 14 14 chr1 86042935 86043005 -196150659 + L2 LINE L2 3243 3312 -1 363 325 54 36 chr1 86043413 86043579 -196150085 + MER5A DNA MER1_type 20 188 -1 21 36 0 0 chr1 86044499 86044527 -196149137 + AT_rich Low_complexity Low_complexity 1 28 0 1241 110 0 0 chr1 86044759 86044923 -196148741 - AluSg/x SINE Alu -14 296 133 324 318 60 13 chr1 86045114 86045265 -196148399 + MIR SINE MIR 98 255 -7 47 0 0 0 chr1 86046023 86046070 -196147594 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr1 86046275 86046304 -196147360 + AT_rich Low_complexity Low_complexity 1 29 0 2071 101 0 17 chr1 86046535 86046846 -196146818 - AluSq SINE Alu 0 306 1 5791 126 16 5 chr1 86047260 86048199 -196145465 - L1MA4 LINE L1 0 6300 5352 228 331 19 70 chr1 86048211 86048368 -196145296 + L2 LINE L2 2935 3083 -189 1873 209 58 5 chr1 86048440 86048886 -196144778 - L1PA16 LINE L1 0 6166 5697 621 40 0 0 chr1 86048899 86048975 -196144689 + (TA)n Simple_repeat Simple_repeat 1 76 0 348 37 241 0 chr1 86048978 86049032 -196144632 - L1PA16 LINE L1 -549 5605 5539 * 4056 168 30 36 chr1 86049031 86049898 -196143766 - L1 LINE L1 -766 5562 4701 3981 170 81 5 chr1 86049929 86050742 -196142922 - L1 LINE L1 -1759 4569 3695 966 202 14 34 chr1 86050742 86050950 -196142714 - AluJb SINE Alu -1 311 108 5535 177 60 36 chr1 86050964 86052226 -196141438 - L1 LINE L1 -2624 3704 2378 1633 129 0 0 chr1 86052226 86052459 -196141205 - AluSg/x SINE Alu -8 302 70 5535 177 60 36 chr1 86052459 86052692 -196140972 - L1 LINE L1 -3950 2378 2152 330 13 114 0 chr1 86052699 86052778 -196140886 + (TA)n Simple_repeat Simple_repeat 1 88 0 659 242 17 58 chr1 86052786 86053026 -196140638 - L1 LINE L1 -4170 2158 1929 1315 87 0 0 chr1 86053038 86053210 -196140454 - AluY SINE Alu -8 303 132 2684 223 34 6 chr1 86053217 86053869 -196139795 - L1 LINE L1 -4411 1917 1285 225 0 0 0 chr1 86053869 86053894 -196139770 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 318 50 0 0 chr1 86053893 86053933 -196139731 + (TA)n Simple_repeat Simple_repeat 1 40 0 2684 223 34 6 chr1 86053894 86053989 -196139675 - L1 LINE L1 -5043 1285 1189 1372 170 31 0 chr1 86053989 86054218 -196139446 - AluSx SINE Alu -76 236 1 4898 197 36 32 chr1 86054221 86054357 -196139307 - L1 LINE L1 -4166 1162 1028 2198 121 0 0 chr1 86054357 86054654 -196139010 - AluSx SINE Alu -15 297 1 4898 197 36 32 chr1 86054654 86055661 -196138003 - L1 LINE L1 -4300 1028 15 1453 61 0 51 chr1 86055679 86055893 -196137771 - L1PA8 LINE L1 0 6172 5970 792 146 0 29 chr1 86056644 86056781 -196136883 - FLAM_C SINE Alu 0 133 1 184 416 67 7 chr1 86057110 86057259 -196136405 + L2 LINE L2 2656 2813 -501 21 36 0 0 chr1 86058308 86058336 -196135328 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 86058869 86058895 -196134769 + AT_rich Low_complexity Low_complexity 1 26 0 21 82 0 0 chr1 86059883 86059932 -196133732 + AT_rich Low_complexity Low_complexity 1 49 0 2222 119 0 0 chr1 86060056 86060367 -196133297 - AluSq SINE Alu -2 311 1 2614 226 54 28 chr1 86061179 86061866 -196131798 - L1ME1 LINE L1 -19 6147 5443 192 349 0 48 chr1 86062040 86062103 -196131561 - L2 LINE L2 -12 3260 3201 2403 98 14 0 chr1 86062723 86063069 -196130595 + L1PA11 LINE L1 5820 6170 -4 712 189 174 137 chr1 86063097 86063441 -196130223 + MLT1C LTR MaLR 34 467 0 2148 215 35 18 chr1 86064268 86064776 -196128888 - LTR40a LTR ERVL 0 519 3 26 30 0 0 chr1 86065422 86065455 -196128209 + AT_rich Low_complexity Low_complexity 1 33 0 4741 30 0 0 chr1 86065594 86066155 -196127509 - L1PA3 LINE L1 0 6155 5595 381 274 57 51 chr1 86066224 86066381 -196127283 + MER5B DNA MER1_type 10 167 -11 289 330 10 58 chr1 86066629 86066732 -196126932 - L2 LINE L2 -36 3236 3139 2348 46 0 0 chr1 86066967 86067282 -196126382 - AluY SINE Alu 0 315 1 2344 100 3 0 chr1 86068693 86069004 -196124660 - AluSp SINE Alu -1 312 1 236 293 101 11 chr1 86069942 86070042 -196123622 + MIR SINE MIR 24 132 -76 286 353 108 69 chr1 86070065 86070371 -196123293 - L2 LINE L2 0 3272 2955 278 253 44 0 chr1 86070729 86070820 -196122844 + L1MC4 LINE L1 6614 6708 -1334 372 316 51 8 chr1 86071232 86071349 -196122315 + L2 LINE L2 3187 3308 -5 210 336 149 34 chr1 86072069 86072304 -196121360 + L2 LINE L2 1967 2228 -1086 * 884 268 125 59 chr1 86072294 86072851 -196120813 - L2 LINE L2 0 3313 2704 249 269 259 0 chr1 86072882 86072990 -196120674 - L2 LINE L2 -722 2592 2457 285 280 13 0 chr1 86072993 86073068 -196120596 + L2 LINE L2 2281 2356 -958 1895 169 111 25 chr1 86073146 86073542 -196120122 + MLT1D LTR MaLR 76 505 0 223 337 140 32 chr1 86073916 86074195 -196119469 + L2 LINE L2 2606 2914 -400 480 327 16 105 chr1 86074272 86074578 -196119086 + L2 LINE L2 2992 3270 -2 209 273 219 42 chr1 86074708 86074968 -196118696 + L3 LINE CR1 1100 1405 -172 252 250 10 106 chr1 86074971 86075075 -196118589 - L2 LINE L2 0 3313 3220 1386 278 59 89 chr1 86075144 86075421 -196118243 - L2 LINE L2 -234 3079 2795 2265 62 39 23 chr1 86075421 86075726 -196117938 - AluY SINE Alu -1 310 1 1386 278 59 89 chr1 86075726 86076359 -196117305 - L2 LINE L2 -518 2795 2190 23 33 0 0 chr1 86076359 86076389 -196117275 + AT_rich Low_complexity Low_complexity 1 30 0 451 174 14 0 chr1 86076442 86076586 -196117078 + (TA)n Simple_repeat Simple_repeat 1 146 0 275 369 141 0 chr1 86076614 86076763 -196116901 + L3 LINE CR1 1405 1574 -3 24 0 0 0 chr1 86076948 86076972 -196116692 + AT_rich Low_complexity Low_complexity 1 24 0 313 196 9 122 chr1 86077291 86077398 -196116266 + L2 LINE L2 3218 3312 -1 213 115 0 231 chr1 86079006 86079055 -196114609 - MIR SINE MIR -109 153 127 1872 169 3 0 chr1 86079055 86079350 -196114314 - AluJb SINE Alu -16 296 1 213 115 0 231 chr1 86079350 86079378 -196114286 - MIR SINE MIR -135 127 94 2077 124 3 0 chr1 86079447 86079737 -196113927 - AluSg SINE Alu -19 291 1 30 0 0 0 chr1 86080233 86080263 -196113401 + AT_rich Low_complexity Low_complexity 1 30 0 507 289 247 0 chr1 86080575 86080741 -196112923 - MIR SINE MIR -25 237 31 1998 116 7 27 chr1 86081112 86081405 -196112259 + AluSx SINE Alu 1 287 -25 614 248 95 16 chr1 86081482 86081716 -196111948 - MIR SINE MIR 0 262 9 1844 139 39 36 chr1 86082524 86082884 -196110780 + MER46B DNA MER2_type 1 236 0 2931 148 68 7 chr1 86083880 86084421 -196109243 - L1MB1 LINE L1 -4 6164 5591 715 135 0 130 chr1 86084623 86084808 -196108856 - L1MB1 LINE L1 -748 5586 5426 252 133 0 0 chr1 86085105 86085150 -196108514 - L1MB7 LINE L1 -21 6163 6119 1736 157 84 0 chr1 86085190 86085464 -196108200 - AluSx SINE Alu -15 297 1 2490 148 57 26 chr1 86085961 86086221 -196107443 - Tigger3(Golem) DNA MER2_type 0 3029 2778 2407 82 0 0 chr1 86086221 86086524 -196107140 + AluY SINE Alu 1 303 -8 2490 148 57 26 chr1 86086524 86086755 -196106909 - Tigger3(Golem) DNA MER2_type -251 2778 2523 3966 91 23 45 chr1 86086771 86087430 -196106234 - L1MA1 LINE L1 -7 6295 5652 * 9703 46 4 0 chr1 86087428 86089405 -196104259 - L1PA5 LINE L1 0 6154 4174 422 335 51 19 chr1 86089406 86089564 -196104100 + L1MA4A LINE L1 557 719 -6130 10914 185 37 8 chr1 86089601 86091061 -196102603 + L1MA4A LINE L1 682 2098 -4750 1907 173 16 0 chr1 86091061 86091368 -196102296 + AluJb SINE Alu 1 312 0 10914 185 37 8 chr1 86091368 86092677 -196100987 + L1MA4A LINE L1 2098 3532 -3316 5541 153 24 33 chr1 86092678 86093072 -196100592 + L1MA4A LINE L1 5168 5564 -1441 468 0 0 0 chr1 86093072 86093124 -196100540 + (TTCC)n Simple_repeat Simple_repeat 2 53 0 1669 148 0 8 chr1 86093128 86093371 -196100293 - AluSx SINE Alu -33 279 39 5541 153 24 33 chr1 86093371 86094834 -196098830 + L1MA4A LINE L1 5567 7001 -4 4815 47 3 5 chr1 86095097 86095689 -196097975 + LTR10C LTR ERV1 1 591 0 661 175 0 45 chr1 86096681 86096835 -196096829 - MER6 DNA MER2_type 0 865 719 975 166 128 32 chr1 86096851 86097038 -196096626 - AluJo SINE Alu -95 217 13 3432 171 88 1 chr1 86097049 86097708 -196095956 - MER6 DNA MER2_type -147 718 3 21 36 0 0 chr1 86097791 86097819 -196095845 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr1 86098086 86098130 -196095534 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 225 373 27 40 chr1 86098708 86098858 -196094806 + MIR3 SINE MIR 37 184 -24 404 288 184 25 chr1 86098859 86099122 -196094542 - L1MC4 LINE L1 -292 7750 7355 1960 123 0 63 chr1 86099122 86099261 -196094403 - AluSx SINE Alu 0 312 166 4982 77 5 9 chr1 86099261 86099924 -196093740 - PABL_A LTR ERV1 0 660 1 1960 123 0 63 chr1 86099924 86100116 -196093548 - AluSx SINE Alu -146 166 2 353 281 38 25 chr1 86100148 86100308 -196093356 - L1MC4 LINE L1 -549 7493 7332 383 287 56 62 chr1 86101223 86101418 -196092246 + MIR SINE MIR 2 195 -67 365 198 74 0 chr1 86102325 86102406 -196091258 - MLT1F1 LTR MaLR -418 149 63 268 308 0 9 chr1 86102460 86102567 -196091097 - MLT1F1-int LTR MaLR -996 375 270 228 340 21 7 chr1 86102543 86102687 -196090977 - MLT1F1-int LTR MaLR -1225 146 1 * 1304 219 55 13 chr1 86102690 86103194 -196090470 - MLT1F1 LTR MaLR -3 564 5 198 0 0 0 chr1 86103253 86103275 -196090389 + (CA)n Simple_repeat Simple_repeat 1 22 0 285 333 8 25 chr1 86105056 86105176 -196088488 + L2 LINE L2 3188 3305 -8 2698 7 0 0 chr1 86105566 86105856 -196087808 - AluYa5 SINE Alu 0 311 22 345 258 94 108 chr1 86106114 86106183 -196087481 - MIR SINE MIR -22 240 172 1501 220 84 50 chr1 86106183 86106247 -196087417 - MLT2B1 LTR ERVL 0 520 460 273 119 0 0 chr1 86106247 86106289 -196087375 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1501 220 84 50 chr1 86106289 86106724 -196086940 - MLT2B1 LTR ERVL -60 460 4 345 258 94 108 chr1 86106724 86106830 -196086834 - MIR SINE MIR -90 172 66 7611 85 6 21 chr1 86106830 86107917 -196085747 + MER11C LTR ERVK 1 1071 0 345 258 94 108 chr1 86107917 86107953 -196085711 - MIR SINE MIR -196 66 31 209 233 17 0 chr1 86108060 86108120 -196085544 + (TTA)n Simple_repeat Simple_repeat 3 63 0 441 104 0 0 chr1 86108795 86108872 -196084792 + (TA)n Simple_repeat Simple_repeat 2 78 0 1641 110 9 0 chr1 86110168 86110386 -196083278 + AluSp SINE Alu 85 304 -9 411 272 125 0 chr1 86110391 86110527 -196083137 + MIR SINE MIR 44 196 -66 846 186 65 112 chr1 86110555 86110620 -196083044 - MLT1C LTR MaLR -2 465 399 2112 132 0 0 chr1 86110620 86110908 -196082756 + AluSx SINE Alu 2 289 -23 846 186 65 112 chr1 86110908 86111165 -196082499 - MLT1C LTR MaLR -68 399 158 253 310 51 13 chr1 86111517 86111705 -196081959 + HAL1b LINE L1 257 1532 -925 344 251 53 86 chr1 86111907 86112361 -196081303 + L1M4 LINE L1 3287 3725 -2421 1000 274 29 72 chr1 86112450 86112976 -196080688 - MLT1J LTR MaLR -3 508 6 703 266 60 50 chr1 86113150 86113549 -196080115 + L2 LINE L2 2303 2705 -609 22 35 0 0 chr1 86113552 86113581 -196080083 + AT_rich Low_complexity Low_complexity 1 29 0 239 113 129 16 chr1 86113864 86113926 -196079738 - MER67C LTR ERV1 -636 74 6 498 316 87 5 chr1 86115202 86115416 -196078248 - MIR SINE MIR -3 259 30 607 310 80 74 chr1 86115462 86116011 -196077653 - L2 LINE L2 0 3272 2706 1442 213 36 33 chr1 86116011 86116400 -196077264 - MLT1B LTR MaLR 0 390 1 607 310 80 74 chr1 86116400 86116525 -196077139 - L2 LINE L2 -566 2706 2583 2980 226 8 18 chr1 86117498 86118157 -196075507 - MER82 DNA MER2_type 0 653 2 226 321 12 25 chr1 86118546 86118627 -196075037 + MER5A DNA MER1_type 88 167 -22 2535 60 0 0 chr1 86118710 86119008 -196074656 - AluY SINE Alu -13 298 1 1007 252 32 58 chr1 86119292 86119704 -196073960 - MLT1I LTR MaLR -8 401 1 229 261 120 38 chr1 86120169 86120353 -196073311 - MLT1I LTR MaLR -210 199 1 533 279 84 26 chr1 86120384 86120610 -196073054 + MIR SINE MIR 20 258 -4 1899 158 0 0 chr1 86120786 86121071 -196072593 - AluSx SINE Alu -11 301 17 336 203 122 81 chr1 86122683 86122806 -196070858 + MER91B DNA MER1_type 1 128 -62 359 322 9 17 chr1 86122999 86123114 -196070550 - L2 LINE L2 0 3313 3200 192 259 233 9 chr1 86123211 86123327 -196070337 + MIR SINE MIR 47 188 -74 1070 264 56 30 chr1 86123778 86124206 -196069458 - LTR16A LTR ERVL 0 450 12 311 222 88 166 chr1 86125005 86125051 -196068613 + MER102a DNA MER1_type 6 54 -1363 2417 154 60 2 chr1 86125051 86125454 -196068210 - MSTB LTR MaLR 0 426 1 311 222 88 166 chr1 86125454 86125618 -196068046 + MER102a DNA MER1_type 54 181 -1236 2357 104 0 0 chr1 86125618 86125915 -196067749 - AluSx SINE Alu -15 297 1 311 222 88 166 chr1 86125915 86126046 -196067618 + MER102a DNA MER1_type 181 321 -9 2396 39 0 0 chr1 86126691 86127020 -196066644 - AluY SINE Alu 0 330 2 1308 170 25 72 chr1 86128245 86128573 -196065091 + MLT2B3 LTR ERVL 245 554 0 2112 302 23 15 chr1 86128581 86129333 -196064331 - L1M3b LINE L1 -5522 759 2 3088 217 26 31 chr1 86129636 86129798 -196063866 - L1PA13 LINE L1 -4158 2639 2478 2318 79 7 0 chr1 86129798 86130088 -196063576 + AluY SINE Alu 1 292 -19 3088 217 26 31 chr1 86130088 86131151 -196062513 - L1PA13 LINE L1 -4319 2478 1328 1459 323 9 32 chr1 86131180 86131738 -196061926 - L1PA13 LINE L1 -6063 724 180 215 122 0 24 chr1 86131747 86131788 -196061876 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 764 169 26 7 chr1 86131788 86131942 -196061722 - MER67C LTR ERV1 -67 643 487 264 354 20 0 chr1 86132047 86132194 -196061470 - L1ME LINE L1 -506 5656 5507 849 248 92 91 chr1 86132208 86132837 -196060827 - L1ME LINE L1 -764 5382 4753 270 106 0 0 chr1 86133048 86133095 -196060569 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2238 65 32 0 chr1 86133098 86133375 -196060289 - AluY SINE Alu -25 286 1 807 280 56 56 chr1 86133399 86134224 -196059440 - L1ME LINE L1 -1530 4616 3792 3741 172 58 25 chr1 86134287 86135047 -196058617 + MER6 DNA MER2_type 1 785 -80 415 179 0 0 chr1 86135120 86135198 -196058466 - MER6 DNA MER2_type -587 278 201 347 132 0 0 chr1 86135201 86135254 -196058410 - MER6 DNA MER2_type -157 4294967283 -65 262 334 105 36 chr1 86135341 86135762 -196057902 + L2 LINE L2 2188 2705 -609 956 230 75 9 chr1 86136112 86136338 -196057326 - MIR SINE MIR -12 250 10 700 210 39 22 chr1 86136371 86136552 -196057112 + MLT2E LTR ERVL 438 621 -7 216 0 0 0 chr1 86136631 86136655 -196057009 + (TTA)n Simple_repeat Simple_repeat 2 25 0 349 259 48 14 chr1 86138256 86138403 -196055261 - MER104 DNA Tc2 0 180 29 1871 197 13 0 chr1 86138663 86139043 -196054621 + MER58D DNA MER1_type 1 385 -1 25 0 0 0 chr1 86139227 86139252 -196054412 + AT_rich Low_complexity Low_complexity 1 25 0 922 201 6 6 chr1 86139587 86139751 -196053913 + FRAM SINE Alu 1 164 -12 292 269 0 10 chr1 86140252 86140356 -196053308 + GA-rich Low_complexity Low_complexity 2 104 0 396 0 0 0 chr1 86142113 86142157 -196051507 + (TG)n Simple_repeat Simple_repeat 1 44 0 308 250 75 8 chr1 86142157 86142277 -196051387 - MIR SINE MIR -13 249 122 384 314 48 0 chr1 86144086 86144191 -196049473 + L2 LINE L2 3145 3254 -18 274 143 0 0 chr1 86144438 86144480 -196049184 + L2 LINE L2 3271 3312 -1 288 200 0 80 chr1 86144751 86144767 -196048897 + L2 LINE L2 2002 2018 -1296 2147 176 62 5 chr1 86144767 86145170 -196048494 + MSTB LTR MaLR 1 426 0 288 200 0 80 chr1 86145170 86145228 -196048436 + L2 LINE L2 2018 2070 -1244 1117 231 28 7 chr1 86145228 86145514 -196048150 + L2 LINE L2 2196 2487 -827 268 310 39 0 chr1 86145515 86145644 -196048020 + MER94 DNA DNA 1 134 0 551 266 30 18 chr1 86145651 86145820 -196047844 + L2 LINE L2 2489 2659 -655 255 287 0 11 chr1 86145825 86145912 -196047752 - L1MCc LINE L1 -5529 894 809 1403 206 48 90 chr1 86145914 86146225 -196047439 - MSTD LTR MaLR 0 396 105 2387 71 7 10 chr1 86146225 86146533 -196047131 + AluY SINE Alu 2 308 -3 1403 206 48 90 chr1 86146533 86146634 -196047030 - MSTD LTR MaLR -291 105 1 6345 225 40 48 chr1 86146634 86147569 -196046095 - MSTD-int LTR MaLR 0 1735 819 2218 111 51 20 chr1 86147569 86147922 -196045742 + THE1B LTR MaLR 1 364 0 6345 225 40 48 chr1 86147922 86148734 -196044930 - MSTD-int LTR MaLR -916 819 2 682 215 0 15 chr1 86148759 86148894 -196044770 + AluJb SINE Alu 2 134 -178 1160 213 26 18 chr1 86148903 86149176 -196044488 - MSTD LTR MaLR -121 275 1 788 291 56 24 chr1 86149456 86149831 -196043833 - L1MCc LINE L1 -5925 498 112 306 386 21 0 chr1 86150422 86150567 -196043097 + MIR SINE MIR 65 212 -50 34 55 0 0 chr1 86150663 86150718 -196042946 + AT_rich Low_complexity Low_complexity 1 55 0 53 30 0 0 chr1 86150983 86151050 -196042614 + AT_rich Low_complexity Low_complexity 1 67 0 844 255 53 0 chr1 86151139 86151347 -196042317 - MIR SINE MIR -42 220 2 26 0 0 0 chr1 86152261 86152287 -196041377 + AT_rich Low_complexity Low_complexity 1 26 0 257 319 51 23 chr1 86154082 86154298 -196039366 + MLT1K LTR MaLR 360 581 -7 25 0 0 0 chr1 86154867 86154892 -196038772 + AT_rich Low_complexity Low_complexity 1 25 0 203 250 0 0 chr1 86155307 86155351 -196038313 + CT-rich Low_complexity Low_complexity 1 44 0 182 319 69 42 chr1 86155680 86155752 -196037912 + L2 LINE L2 3176 3249 -23 840 286 190 20 chr1 86155831 86156511 -196037153 - L2 LINE L2 -2 3311 2505 1393 161 123 33 chr1 86156607 86156974 -196036690 - Charlie1b DNA MER1_type -2 521 122 2056 153 45 3 chr1 86156975 86157353 -196036311 + MER57A LTR ERV1 3 396 -7 499 256 16 8 chr1 86157359 86157484 -196036180 - Charlie1b DNA MER1_type -397 126 1 1865 113 92 7 chr1 86157762 86158045 -196035619 + AluSg SINE Alu 1 307 -3 364 260 10 30 chr1 86159718 86159818 -196033846 - L2 LINE L2 -4 3309 3212 538 237 312 18 chr1 86159889 86159986 -196033678 + LTR50 LTR ERVL 20 87 -708 2026 129 63 17 chr1 86159986 86160334 -196033330 - THE1B LTR MaLR 0 364 1 538 237 312 18 chr1 86160334 86160569 -196033095 + LTR50 LTR ERVL 87 450 -345 241 289 41 0 chr1 86160664 86160761 -196032903 + LTR33A LTR ERVL 412 512 -11 4881 229 100 42 chr1 86160789 86162509 -196031155 + Charlie2b DNA MER1_type 687 2306 -556 1659 149 62 43 chr1 86162509 86162877 -196030787 + THE1C LTR MaLR 1 375 0 4881 229 100 42 chr1 86162877 86162975 -196030689 + Charlie2b DNA MER1_type 2306 2397 -465 2321 118 0 0 chr1 86162975 86163280 -196030384 + AluSg SINE Alu 2 306 -4 4881 229 100 42 chr1 86163280 86163441 -196030223 + Charlie2b DNA MER1_type 2397 2782 0 730 200 0 22 chr1 86163647 86163782 -196029882 + FLAM_C SINE Alu 2 133 0 1089 183 0 0 chr1 86164039 86164214 -196029450 - AluJb SINE Alu -2 310 136 327 344 85 62 chr1 86166289 86166679 -196026985 + L2 LINE L2 298 696 -2618 238 349 34 95 chr1 86166861 86166946 -196026718 + L2 LINE L2 2635 2724 -548 1728 144 0 23 chr1 86166946 86167210 -196026454 + AluSx SINE Alu 1 258 -54 238 349 34 95 chr1 86167210 86167601 -196026063 + L2 LINE L2 2724 3091 -181 578 307 37 14 chr1 86167822 86168037 -196025627 - MIR SINE MIR -29 233 14 222 294 137 0 chr1 86168781 86168883 -196024781 - L2 LINE L2 -8 3264 3149 1731 162 38 21 chr1 86169045 86169384 -196024280 - MER7A DNA MER2_type -3 343 1 233 57 29 0 chr1 86169388 86169423 -196024241 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 740 191 23 8 chr1 86169503 86169634 -196024030 + L2 LINE L2 3140 3272 0 2138 116 7 0 chr1 86170859 86171151 -196022513 + AluSx SINE Alu 1 294 -18 364 348 51 0 chr1 86172234 86172372 -196021292 + MIR3 SINE MIR 6 150 -58 347 340 41 31 chr1 86173030 86173224 -196020440 + L3 LINE CR1 331 526 -1051 5674 138 22 53 chr1 86173471 86174563 -196019101 + L1M3f LINE L1 2 1059 -4269 3297 146 12 7 chr1 86174571 86175134 -196018530 + L1MC1 LINE L1 5767 6332 -1 321 206 0 0 chr1 86175310 86175378 -196018286 + MER63 DNA MER1_type 2 69 -861 310 163 0 23 chr1 86175368 86175454 -196018210 + MER63 DNA MER1_type 816 899 -161 * 1443 182 9 18 chr1 86175530 86175859 -196017805 - L1MD3 LINE L1 -9 7986 7661 632 346 57 23 chr1 86175912 86176299 -196017365 + L3 LINE CR1 522 921 -656 870 329 140 25 chr1 86176661 86177132 -196016532 + L3 LINE CR1 909 1433 -144 267 335 116 37 chr1 86177793 86177957 -196015707 + MER5B DNA MER1_type 1 177 -1 203 200 14 57 chr1 86179541 86179611 -196014053 + GA-rich Low_complexity Low_complexity 4 70 0 1651 191 48 11 chr1 86179904 86180278 -196013386 + MLT1B LTR MaLR 1 386 -4 2985 97 11 5 chr1 86180685 86181119 -196012545 - L1PA10 LINE L1 0 6168 5732 714 281 5 21 chr1 86181877 86182069 -196011595 + MIR SINE MIR 29 217 -45 195 210 32 97 chr1 86182555 86182617 -196011047 - MER5A DNA MER1_type -25 164 107 257 267 58 117 chr1 86184746 86184952 -196008712 - MIR SINE MIR -51 211 18 304 272 46 51 chr1 86185024 86185219 -196008445 - MLT1K LTR MaLR 0 588 395 2150 94 20 7 chr1 86185813 86186110 -196007554 - AluSx SINE Alu -11 301 1 1385 213 56 43 chr1 86186306 86186772 -196006892 - MER61E LTR ERV1 -54 515 92 247 183 122 12 chr1 86186812 86186894 -196006770 - LTR19C LTR ERV1 -688 91 1 214 216 78 0 chr1 86187033 86187084 -196006580 - L2 LINE L2 -1 3271 3217 2135 107 3 31 chr1 86187200 86187517 -196006147 - AluSq SINE Alu -5 308 1 206 98 0 49 chr1 86187727 86187768 -196005896 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 196 183 17 33 chr1 86187902 86187962 -196005702 + A-rich Low_complexity Low_complexity 5 63 0 2248 121 7 0 chr1 86189207 86189505 -196004159 + AluSx SINE Alu 1 300 -12 1066 273 122 40 chr1 86189965 86190522 -196003142 + MLT1L LTR MaLR 11 613 -2 341 347 142 6 chr1 86191228 86191404 -196002260 + L1MC4a LINE L1 5731 5930 -1878 21 57 0 0 chr1 86191565 86191600 -196002064 + AT_rich Low_complexity Low_complexity 1 35 0 1327 240 104 25 chr1 86192001 86192367 -196001297 + MLT2B1 LTR ERVL 1 395 -125 241 260 31 0 chr1 86192388 86192515 -196001149 + (TA)n Simple_repeat Simple_repeat 1 131 0 306 279 69 78 chr1 86192533 86192737 -196000927 + L2 LINE L2 3076 3277 -36 360 252 55 16 chr1 86193311 86193438 -196000226 - MLT1L LTR MaLR -8 607 476 318 245 41 10 chr1 86193611 86193709 -195999955 - L1ME4a LINE L1 0 6121 6021 333 82 0 0 chr1 86194452 86194501 -195999163 + (TG)n Simple_repeat Simple_repeat 2 50 0 219 217 72 0 chr1 86195421 86195490 -195998174 + CT-rich Low_complexity Low_complexity 2 75 0 404 266 78 31 chr1 86195586 86195714 -195997950 - MIR SINE MIR -71 191 58 6840 59 39 5 chr1 86196045 86197560 -195996104 - L1PA7 LINE L1 -4 6150 4607 284 146 0 0 chr1 86197560 86197608 -195996056 + L1PA7 LINE L1 4564 4611 -1535 201 316 158 30 chr1 86197615 86197748 -195995916 - MIR SINE MIR -76 186 37 239 286 82 31 chr1 86197847 86197945 -195995719 - L2 LINE L2 -21 3292 3190 577 295 92 10 chr1 86198327 86198534 -195995130 - MIR SINE MIR -6 256 33 206 302 278 15 chr1 86199576 86199781 -195993883 + MIR SINE MIR 4 262 0 374 341 63 18 chr1 86200026 86200058 -195993606 - L1MEd LINE L1 -3599 2530 2501 1822 155 14 10 chr1 86200058 86200355 -195993309 - AluJo SINE Alu -12 300 3 374 341 63 18 chr1 86200355 86200545 -195993119 - L1MEd LINE L1 -3628 2501 2298 1010 229 69 27 chr1 86200554 86200886 -195992778 + L1ME1 LINE L1 5816 6161 -5 423 308 133 5 chr1 86200978 86201173 -195992491 - HAL1 LINE L1 -917 1590 1371 373 266 31 73 chr1 86201176 86201465 -195992199 - L1MEd LINE L1 -4862 1257 981 294 296 99 37 chr1 86201666 86201828 -195991836 - L1MEd LINE L1 -5393 726 555 814 260 82 27 chr1 86201833 86202326 -195991338 + MLT1G1 LTR MaLR 1 469 -86 711 191 9 0 chr1 86202726 86202870 -195990794 - FLAM_C SINE Alu 0 146 2 991 216 36 31 chr1 86203206 86203428 -195990236 + MER58A DNA MER1_type 2 224 0 252 0 0 0 chr1 86203466 86203494 -195990170 + (TA)n Simple_repeat Simple_repeat 2 29 0 4281 47 6 0 chr1 86203494 86204021 -195989643 - L1PA8 LINE L1 -10 6162 5633 4189 110 10 82 chr1 86204236 86205007 -195988657 + L1PB2 LINE L1 5435 6150 -1 1582 174 6 73 chr1 86206596 86206953 -195986711 + MER7A DNA MER2_type 2 332 -14 4099 134 40 46 chr1 86208153 86208510 -195985154 - MER4D LTR ERV1 0 866 509 2595 59 0 0 chr1 86208510 86208817 -195984847 - AluY SINE Alu -2 309 3 4099 134 40 46 chr1 86208817 86209033 -195984631 - MER4D LTR ERV1 -357 509 293 2081 122 17 0 chr1 86209033 86209328 -195984336 + AluSx SINE Alu 1 300 -12 4099 134 40 46 chr1 86209328 86209659 -195984005 - MER4D LTR ERV1 -573 293 1 196 290 0 29 chr1 86209660 86209729 -195983935 - MIR SINE MIR -79 183 117 761 223 121 92 chr1 86209730 86210211 -195983453 + L1MC4 LINE L1 7459 7953 -89 908 217 6 0 chr1 86210218 86210393 -195983271 + FRAM SINE Alu 1 171 -5 241 242 165 11 chr1 86210735 86210826 -195982838 + L2 LINE L2 3205 3309 -4 188 330 54 27 chr1 86210858 86210970 -195982694 - L2 LINE L2 -242 3030 2916 285 98 0 0 chr1 86212179 86212220 -195981444 + (GAA)n Simple_repeat Simple_repeat 1 41 0 441 0 0 0 chr1 86212371 86212420 -195981244 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 70 0 0 chr1 86212535 86212578 -195981086 + AT_rich Low_complexity Low_complexity 1 43 0 1165 249 50 63 chr1 86212738 86213200 -195980464 + LTR40b LTR ERVL 4 459 -3 808 165 0 15 chr1 86213396 86213529 -195980135 + FLAM_C SINE Alu 1 131 -2 1447 177 70 6 chr1 86214976 86215292 -195978372 + MER58B DNA MER1_type 1 336 -5 2288 121 0 0 chr1 86216203 86216508 -195977156 - AluSx SINE Alu -7 305 1 22 70 0 0 chr1 86216509 86216552 -195977112 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr1 86216758 86216781 -195976883 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 86217354 86217377 -195976287 + AT_rich Low_complexity Low_complexity 1 23 0 197 300 114 0 chr1 86218131 86218201 -195975463 + MIR SINE MIR 118 195 -67 268 208 191 79 chr1 86218860 86219038 -195974626 - MIR SINE MIR -3 259 62 692 152 72 0 chr1 86219134 86219259 -195974405 - LTR5 LTR ERVK -455 514 381 242 238 16 48 chr1 86220110 86220236 -195973428 + (CATATA)n Simple_repeat Simple_repeat 1 122 0 224 158 0 85 chr1 86220752 86220834 -195972830 + G-rich Low_complexity Low_complexity 1 75 0 574 315 28 6 chr1 86222548 86222729 -195970935 + MIR SINE MIR 28 212 -50 21 57 0 0 chr1 86222831 86222866 -195970798 + AT_rich Low_complexity Low_complexity 1 35 0 525 235 26 58 chr1 86222867 86223061 -195970603 - MIR SINE MIR -62 146 1 227 355 78 18 chr1 86223201 86223367 -195970297 + MIR SINE MIR 13 188 -74 1557 213 34 68 chr1 86223436 86223995 -195969669 - MER34 LTR ERV1 0 542 3 199 344 104 16 chr1 86224119 86224244 -195969420 - L2 LINE L2 -161 3111 2976 256 262 71 12 chr1 86224303 86224387 -195969277 - MIR SINE MIR -74 188 100 396 333 103 6 chr1 86224598 86224763 -195968901 + MIR SINE MIR 24 204 -58 2131 127 0 3 chr1 86224906 86225198 -195968466 - AluSx SINE Alu -21 291 1 284 206 112 0 chr1 86225334 86225441 -195968223 - L1ME LINE L1 -656 5465 5347 208 348 87 0 chr1 86226306 86226398 -195967266 + L2 LINE L2 3169 3268 -4 332 324 19 19 chr1 86227195 86227303 -195966361 - MIR SINE MIR -124 138 31 1343 60 102 46 chr1 86227303 86227519 -195966145 + MER30 DNA MER1_type 1 228 -2 384 163 216 72 chr1 86227838 86227991 -195965673 + MER69A DNA AcHobo 2 176 -1 1279 218 42 13 chr1 86229702 86230082 -195963582 - Charlie5 DNA MER1_type 0 2624 2234 591 167 8 17 chr1 86230083 86230203 -195963461 - Charlie5 DNA MER1_type -2489 123 5 298 291 112 30 chr1 86230952 86231086 -195962578 - MIR SINE MIR -1 261 117 1460 209 59 6 chr1 86231120 86231441 -195962223 + MER58B DNA MER1_type 4 341 0 292 204 159 11 chr1 86231589 86231677 -195961987 - MIR SINE MIR -74 134 34 659 297 24 0 chr1 86231703 86231868 -195961796 - MER5A DNA MER1_type -11 178 10 499 265 150 20 chr1 86233662 86233862 -195959802 - MIR SINE MIR 0 262 37 440 239 153 31 chr1 86233969 86234132 -195959532 - MIR SINE MIR -10 252 70 566 247 291 0 chr1 86234172 86234354 -195959310 - MIR SINE MIR -2 260 26 241 149 21 0 chr1 86234755 86234802 -195958862 + L2 LINE L2 2677 2724 -590 211 359 0 0 chr1 86234860 86234913 -195958751 + L2 LINE L2 3174 3226 -46 303 346 59 8 chr1 86234943 86235151 -195958513 - L2 LINE L2 -309 2963 2741 2344 92 0 3 chr1 86235152 86235325 -195958339 - AluY SINE Alu -17 294 121 207 0 0 0 chr1 86235325 86235348 -195958316 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2344 92 0 3 chr1 86235348 86235469 -195958195 - AluY SINE Alu -190 121 1 193 149 0 64 chr1 86235940 86235987 -195957677 - L2 LINE L2 -2 3311 3268 * 318 254 138 8 chr1 86235960 86236090 -195957574 - MIR SINE MIR -13 249 103 192 229 18 119 chr1 86236152 86236261 -195957403 - MIR SINE MIR -150 112 15 258 324 56 42 chr1 86236588 86236804 -195956860 + L2 LINE L2 2638 2856 -458 2061 157 17 29 chr1 86237670 86238021 -195955643 + MER7A DNA MER2_type 2 346 0 548 274 40 45 chr1 86238566 86238709 -195954955 - MIR SINE MIR -11 251 108 851 240 17 0 chr1 86238709 86238884 -195954780 + MER45A DNA AcHobo 1 178 0 548 274 40 45 chr1 86238884 86238963 -195954701 - MIR SINE MIR -154 108 30 1357 247 105 43 chr1 86239654 86240188 -195953476 + MER34B LTR ERV1 3 565 0 839 219 83 8 chr1 86240499 86240741 -195952923 - MIR SINE MIR -1 261 2 375 242 137 19 chr1 86241650 86241811 -195951853 + MIR SINE MIR 83 262 0 60 27 0 0 chr1 86242667 86242741 -195950923 + AT_rich Low_complexity Low_complexity 1 74 0 1331 247 24 26 chr1 86242974 86243037 -195950627 - L1ME3A LINE L1 -202 5951 5889 2393 97 0 0 chr1 86243037 86243337 -195950327 - AluSx SINE Alu -12 300 1 1331 247 24 26 chr1 86243337 86243362 -195950302 - L1ME3A LINE L1 -264 5889 5865 2818 98 3 5 chr1 86243362 86243738 -195949926 + THE1C LTR MaLR 1 375 0 1331 247 24 26 chr1 86243738 86244028 -195949636 - L1ME3A LINE L1 -288 5865 5573 1147 227 67 14 chr1 86244052 86244413 -195949251 - LTR37A LTR ERV1 -13 413 34 1106 283 61 32 chr1 86244468 86245456 -195948208 - L1ME1 LINE L1 -567 5578 4563 1379 213 115 34 chr1 86245462 86245918 -195947746 + L1ME1 LINE L1 5608 6136 -11 1354 281 85 21 chr1 86245931 86246950 -195946714 - L1ME3A LINE L1 -1549 4580 3481 3678 133 37 37 chr1 86246967 86247643 -195946021 - L1MC1 LINE L1 0 6333 5658 581 262 142 44 chr1 86247652 86248348 -195945316 - L1MEc LINE L1 -2956 3173 2547 318 26 0 0 chr1 86248348 86248387 -195945277 + (TG)n Simple_repeat Simple_repeat 1 39 0 581 262 142 44 chr1 86248387 86248786 -195944878 - L1MEc LINE L1 -3582 2547 1914 578 277 89 67 chr1 86248888 86249621 -195944043 - L1MEc LINE L1 -4586 1724 976 866 237 113 53 chr1 86249670 86250136 -195943528 - MLT1D LTR MaLR -2 465 1 324 332 50 35 chr1 86250206 86250465 -195943199 - L1MEc LINE L1 -5306 813 551 2203 117 79 15 chr1 86250814 86251156 -195942508 - THE1B LTR MaLR 0 364 1 252 195 103 11 chr1 86251236 86251323 -195942341 - L1MC5 LINE L1 -35 7926 7832 204 275 99 11 chr1 86251437 86251528 -195942136 + L2 LINE L2 3171 3269 -3 236 301 156 6 chr1 86251540 86251713 -195941951 - MIR3 SINE MIR -7 201 3 416 336 109 5 chr1 86252090 86252301 -195941363 + MIR SINE MIR 20 252 -10 25 0 0 0 chr1 86253430 86253455 -195940209 + AT_rich Low_complexity Low_complexity 1 25 0 399 299 36 15 chr1 86253460 86253628 -195940036 - MIR SINE MIR -62 146 2 342 0 0 0 chr1 86254994 86255032 -195938632 + (TG)n Simple_repeat Simple_repeat 2 39 0 307 252 151 0 chr1 86256634 86256753 -195936911 + MIR3 SINE MIR 58 194 -14 204 292 0 0 chr1 86257094 86257142 -195936522 + GA-rich Low_complexity Low_complexity 5 52 0 7174 53 6 34 chr1 86257586 86258551 -195935113 - SVA Other Other -16 1370 433 577 100 27 27 chr1 86258564 86259512 -195934152 - SVA Other Other -592 794 685 2175 87 7 58 chr1 86259964 86260274 -195933390 - AluSq SINE Alu -19 294 1 1911 112 3 35 chr1 86260792 86261079 -195932585 + AluSx SINE Alu 35 312 0 257 289 58 52 chr1 86262043 86262216 -195931448 - L2 LINE L2 -15 3298 3125 2091 133 10 3 chr1 86262780 86263089 -195930575 + AluSx SINE Alu 1 311 -1 578 318 69 8 chr1 86263896 86264104 -195929560 + MIR SINE MIR 2 229 -33 2175 71 0 3 chr1 86264104 86264387 -195929277 - L1PA8 LINE L1 -2 6170 5889 578 318 69 8 chr1 86264387 86264423 -195929241 + MIR SINE MIR 229 261 -1 195 286 214 16 chr1 86264589 86264715 -195928949 - MIR3 SINE MIR -55 153 3 2342 96 0 0 chr1 86264960 86265252 -195928412 - AluSg SINE Alu -18 292 1 284 325 148 16 chr1 86265514 86265757 -195927907 + L3 LINE CR1 1027 1301 -276 184 309 12 0 chr1 86266096 86266180 -195927484 + L2 LINE L2 3183 3267 -5 266 169 62 15 chr1 86266669 86266734 -195926930 - MIR SINE MIR -111 151 84 794 254 217 48 chr1 86266748 86266921 -195926743 + L2 LINE L2 2262 2405 -908 1893 170 143 37 chr1 86266921 86267375 -195926289 - MLT1D LTR MaLR -3 502 1 794 254 217 48 chr1 86267375 86267566 -195926098 + L2 LINE L2 2405 2562 -751 2387 91 0 0 chr1 86267566 86267862 -195925802 + AluY SINE Alu 1 296 -15 794 254 217 48 chr1 86267862 86268361 -195925303 + L2 LINE L2 2562 3296 -17 654 208 151 0 chr1 86269054 86269213 -195924451 + MER5A DNA MER1_type 1 183 -6 2375 82 0 23 chr1 86269221 86269526 -195924138 + AluSx SINE Alu 1 298 -14 2153 123 20 3 chr1 86269878 86270179 -195923485 - AluSx SINE Alu -6 306 1 1261 140 47 111 chr1 86270942 86271284 -195922380 + MER33 DNA MER1_type 1 320 -4 379 138 0 25 chr1 86272504 86272584 -195921080 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 185 343 120 23 chr1 86272756 86272931 -195920733 + MIR SINE MIR 21 212 -50 245 304 69 0 chr1 86273675 86273777 -195919887 - MIR SINE MIR -3 259 151 225 304 18 36 chr1 86274168 86274280 -195919384 - MER70B LTR ERVL -18 560 451 2408 296 26 15 chr1 86275102 86275898 -195917766 - MER70-int LTR ERVL -1504 3519 2715 2704 282 86 46 chr1 86276265 86278109 -195915555 - MER70-int LTR ERVL -2297 2726 794 419 281 0 0 chr1 86279231 86279345 -195914319 - MER70-int LTR ERVL -4454 569 456 273 324 46 0 chr1 86279842 86279950 -195913714 - MER70B LTR ERVL -23 555 443 245 228 132 66 chr1 86280355 86280491 -195913173 + L2 LINE L2 3165 3309 -4 318 289 10 19 chr1 86280497 86280601 -195913063 + MIR3 SINE MIR 93 195 -13 2362 86 7 0 chr1 86280992 86281284 -195912380 + AluSx SINE Alu 1 294 -18 459 274 73 36 chr1 86281517 86281736 -195911928 - MIR SINE MIR -16 246 20 186 43 0 0 chr1 86282687 86282710 -195910954 + (TG)n Simple_repeat Simple_repeat 1 23 0 420 302 70 28 chr1 86283049 86283264 -195910400 - MIR SINE MIR -33 229 6 2687 36 0 0 chr1 86285046 86285348 -195908316 + AluY SINE Alu 1 302 -9 295 271 6 6 chr1 86285390 86285560 -195908104 + (CATA)n Simple_repeat Simple_repeat 1 170 0 433 288 184 6 chr1 86285824 86285987 -195907677 + MIR3 SINE MIR 5 196 -12 341 296 99 28 chr1 86286679 86286747 -195906917 + L2 LINE L2 3121 3183 -89 1366 167 47 69 chr1 86286747 86287064 -195906600 - AluJo SINE Alu 0 312 3 341 296 99 28 chr1 86287064 86287137 -195906527 + L2 LINE L2 3183 3272 0 315 282 76 62 chr1 86288370 86288619 -195905045 - MLT1J LTR MaLR -21 465 237 339 96 0 0 chr1 86289522 86289574 -195904090 + (TG)n Simple_repeat Simple_repeat 2 53 0 510 309 65 9 chr1 86289998 86290215 -195903449 + MIR SINE MIR 22 250 -12 303 273 91 61 chr1 86290621 86290753 -195902911 - L2 LINE L2 -1 3271 3136 455 242 0 0 chr1 86291511 86291606 -195902058 + MER5A DNA MER1_type 9 103 -86 2226 113 3 0 chr1 86293195 86293496 -195900168 - AluSx SINE Alu -10 302 1 665 225 32 88 chr1 86293632 86293881 -195899783 + L2 LINE L2 3077 3311 -2 535 333 28 9 chr1 86295026 86295242 -195898422 + MIR SINE MIR 23 242 -20 765 131 54 8 chr1 86295600 86295730 -195897934 - L1MA9 LINE L1 -5 6307 6172 1333 140 8 72 chr1 86295735 86295999 -195897665 - L1MA9 LINE L1 -449 5863 5617 302 294 119 6 chr1 86296128 86296288 -195897376 + MIR3 SINE MIR 17 194 -14 1138 184 68 0 chr1 86297572 86297806 -195895858 - LTR16C LTR ERVL -2 489 240 252 277 69 15 chr1 86297796 86297926 -195895738 - LTR16C LTR ERVL -354 137 1 * 303 328 47 8 chr1 86297982 86298110 -195895554 - MIR3 SINE MIR -68 140 8 353 327 83 28 chr1 86299075 86299416 -195894248 - L1MC/D LINE L1 -717 5642 5334 21 0 0 0 chr1 86301149 86301170 -195892494 + AT_rich Low_complexity Low_complexity 1 21 0 8501 183 35 52 chr1 86301518 86301592 -195892072 - L1MC3 LINE L1 -8 7777 7703 2432 60 13 32 chr1 86301592 86301908 -195891756 - AluY SINE Alu -1 310 1 8501 183 35 52 chr1 86301908 86302867 -195890797 - L1MC3 LINE L1 -82 7703 6791 2474 52 0 0 chr1 86302867 86303156 -195890508 - AluY SINE Alu -22 289 1 8501 183 35 52 chr1 86303156 86304061 -195889603 - L1MC3 LINE L1 -994 6791 5871 268 327 35 9 chr1 86304291 86304404 -195889260 + MIR SINE MIR 14 129 -133 214 331 83 16 chr1 86304742 86304863 -195888801 + MIR SINE MIR 91 219 -43 289 287 85 0 chr1 86305012 86305106 -195888558 - MIR SINE MIR -115 147 46 2059 143 19 3 chr1 86305320 86305627 -195888037 - AluSx SINE Alu 0 312 1 348 381 32 13 chr1 86305719 86305874 -195887790 - L2 LINE L2 -3 3269 3112 635 308 15 5 chr1 86305919 86306117 -195887547 - MIR SINE MIR -13 249 50 228 350 22 67 chr1 86306148 86306371 -195887293 - L2 LINE L2 -187 3085 2873 254 320 61 46 chr1 86306420 86306617 -195887047 - L2 LINE L2 -557 2757 2558 402 336 29 7 chr1 86307369 86307509 -195886155 + L3 LINE CR1 1430 1572 -5 199 305 49 0 chr1 86307505 86307587 -195886077 - MIR SINE MIR -106 102 17 * 640 216 97 17 chr1 86308260 86308436 -195885228 + MIR SINE MIR 63 252 -10 478 299 57 24 chr1 86308547 86308758 -195884906 + MIR SINE MIR 3 220 -42 292 263 59 122 chr1 86308879 86309149 -195884515 - L2 LINE L2 -143 3129 2877 351 304 58 29 chr1 86309581 86309678 -195883986 + MIR SINE MIR 47 151 -111 817 198 6 33 chr1 86309678 86309860 -195883804 + MER104 DNA MER2_type 1 177 -3 351 304 58 29 chr1 86309860 86309900 -195883764 + MIR SINE MIR 151 188 -74 188 296 0 0 chr1 86310527 86310571 -195883093 + MIR SINE MIR 217 260 -2 20555 175 41 5 chr1 86311070 86311086 -195882578 - L1PA12 LINE L1 -39 6780 6766 876 68 0 17 chr1 86311086 86311204 -195882460 - L1PA13 LINE L1 -6 6157 6042 20555 175 41 5 chr1 86311204 86316372 -195877292 - L1PA12 LINE L1 -53 6766 1396 754 318 47 4 chr1 86316375 86316611 -195877053 - L1PA12 LINE L1 -5529 1258 1013 297 0 0 0 chr1 86317231 86317264 -195876400 + (TG)n Simple_repeat Simple_repeat 1 33 0 15641 114 24 13 chr1 86317565 86320591 -195873073 + L1PA8A LINE L1 3126 6126 -5 618 238 89 103 chr1 86320594 86320786 -195872878 - L1ME4a LINE L1 -106 6015 5822 2216 128 0 3 chr1 86320786 86321099 -195872565 - AluSx SINE Alu 0 312 1 618 238 89 103 chr1 86321099 86321537 -195872127 - L1ME4a LINE L1 -299 5822 5394 913 162 27 43 chr1 86322920 86323060 -195870604 + L1MB3 LINE L1 5995 6133 -50 907 211 0 29 chr1 86323060 86323231 -195870433 + FRAM SINE Alu 1 166 0 913 162 27 43 chr1 86323231 86323275 -195870389 + L1MB3 LINE L1 6133 6176 -7 281 288 114 23 chr1 86324613 86324745 -195868919 - MER5B DNA MER1_type -34 144 1 1173 272 80 73 chr1 86325382 86325806 -195867858 + L2 LINE L2 2372 2791 -522 254 57 29 0 chr1 86325806 86325841 -195867823 - U2 snRNA snRNA -152 36 1 1173 272 80 73 chr1 86325841 86326326 -195867338 + L2 LINE L2 2791 3313 0 198 308 128 26 chr1 86326337 86326454 -195867210 + MIR SINE MIR 48 176 -86 4884 172 26 12 chr1 86326538 86327353 -195866311 + LTR1B LTR ERV1 1 826 0 303 223 28 33 chr1 86329548 86329646 -195864018 + (TA)n Simple_repeat Simple_repeat 2 99 -111 2240 142 30 9 chr1 86329646 86329984 -195863680 - MER7A DNA MER2_type 0 346 4 303 223 28 33 chr1 86329984 86330095 -195863569 + (TA)n Simple_repeat Simple_repeat 99 210 0 1894 126 0 0 chr1 86330399 86330660 -195863004 + AluSx SINE Alu 1 261 -51 387 0 0 0 chr1 86330662 86330705 -195862959 + (CA)n Simple_repeat Simple_repeat 1 43 0 590 264 14 12 chr1 86331126 86331325 -195862339 - MIR SINE MIR -33 229 30 205 290 72 0 chr1 86331404 86331473 -195862191 - L2 LINE L2 -43 3229 3156 262 233 244 23 chr1 86331526 86331612 -195862052 + L2 LINE L2 3195 3299 -14 377 207 16 124 chr1 86331766 86331887 -195861777 - L2 LINE L2 -3 3269 3162 2059 150 31 3 chr1 86331898 86332225 -195861439 - MER2 DNA MER2_type -9 336 1 276 292 104 52 chr1 86332515 86332707 -195860957 - MIR SINE MIR -3 259 58 279 54 0 0 chr1 86333873 86333910 -195859754 + (CA)n Simple_repeat Simple_repeat 2 38 0 2378 83 0 0 chr1 86334222 86334511 -195859153 + AluSg SINE Alu 1 289 -21 1494 159 96 20 chr1 86334693 86335065 -195858599 - Tigger2 DNA MER2_type -1 2717 6 581 208 157 6 chr1 86337063 86337222 -195856442 + MER5A DNA MER1_type 7 189 0 1928 172 14 51 chr1 86337382 86337817 -195855847 + L1MA6 LINE L1 5877 6295 -5 490 159 80 9 chr1 86339442 86339555 -195854109 - L1MA8 LINE L1 -1 6290 6170 439 268 60 48 chr1 86339764 86339835 -195853829 - MIR SINE MIR -10 252 183 1237 241 74 23 chr1 86339835 86340188 -195853476 - MLT1A2 LTR MaLR 0 374 4 439 268 60 48 chr1 86340188 86340324 -195853340 - MIR SINE MIR -79 183 45 7145 162 28 29 chr1 86340474 86341896 -195851768 - Charlie1a DNA MER1_type -1 1454 34 331 209 209 0 chr1 86342193 86342308 -195851356 + MIR SINE MIR 123 261 -1 739 258 16 0 chr1 86342347 86342533 -195851131 - MER5A DNA MER1_type 0 189 1 355 200 9 113 chr1 86342555 86342617 -195851047 + Charlie1 DNA MER1_type 2650 2696 -65 2063 119 10 0 chr1 86342617 86342911 -195850753 - AluSq SINE Alu -16 297 1 355 200 9 113 chr1 86342911 86342963 -195850701 + Charlie1 DNA MER1_type 2696 2752 -9 515 315 28 6 chr1 86343872 86344053 -195849611 + MIR SINE MIR 28 212 -50 21 57 0 0 chr1 86344155 86344190 -195849474 + AT_rich Low_complexity Low_complexity 1 35 0 470 245 25 52 chr1 86344191 86344385 -195849279 - MIR SINE MIR -62 146 1 196 312 95 19 chr1 86344524 86344691 -195848973 + MIR3 SINE MIR 15 188 -74 1573 213 34 66 chr1 86344760 86345318 -195848346 - MER34 LTR ERV1 0 542 3 222 262 71 12 chr1 86345626 86345710 -195847954 - MIR SINE MIR -74 188 100 335 333 103 6 chr1 86345921 86346086 -195847578 + MIR SINE MIR 24 204 -58 2142 127 0 3 chr1 86346229 86346521 -195847143 - AluSx SINE Alu -21 291 1 280 336 19 0 chr1 86346576 86346683 -195846981 - MER70-int LTR ERVL -4096 927 819 419 281 0 0 chr1 86347820 86347934 -195845730 - MER70-int LTR ERVL -4454 569 456 273 324 46 0 chr1 86348429 86348537 -195845127 - MER70B LTR ERVL -23 555 443 1818 112 11 35 chr1 86349294 86349579 -195844085 - AluSx SINE Alu 0 312 35 2172 88 7 55 chr1 86350126 86350434 -195843230 + AluSq SINE Alu 1 293 -20 201 158 0 0 chr1 86350726 86350764 -195842900 + A-rich Low_complexity Low_complexity 1 38 0 6382 56 38 25 chr1 86350895 86352582 -195841082 + SVA Other Other 27 1370 -16 210 128 43 21 chr1 86353020 86353067 -195840597 + CT-rich Low_complexity Low_complexity 5 52 0 279 272 38 63 chr1 86354523 86354681 -195838983 - MLT1G LTR MaLR 0 555 402 361 135 0 0 chr1 86354810 86354862 -195838802 - MLT1G LTR MaLR -312 278 227 7120 27 1 5 chr1 86354867 86355694 -195837970 - L1PA4 LINE L1 -1 6154 5331 1323 177 12 75 chr1 86355694 86355795 -195837869 + MLT1B LTR MaLR 78 184 -206 1825 141 85 0 chr1 86355795 86356065 -195837599 + AluSx SINE Alu 1 293 -19 1323 177 12 75 chr1 86356065 86356297 -195837367 + MLT1B LTR MaLR 184 390 0 236 310 149 6 chr1 86357199 86357373 -195836291 + MIR3 SINE MIR 3 201 -7 223 275 99 11 chr1 86357385 86357476 -195836188 - L2 LINE L2 -3 3269 3171 252 195 103 11 chr1 86357589 86357676 -195835988 + L1MC5 LINE L1 7832 7926 -35 2557 107 8 14 chr1 86357756 86358122 -195835542 + THE1B LTR MaLR 1 364 0 396 275 44 11 chr1 86359104 86359286 -195834378 - MER5A DNA MER1_type -1 188 1 259 258 15 91 chr1 86359421 86359668 -195833996 - L1MB4 LINE L1 -6 6174 5951 448 143 86 9 chr1 86360318 86360423 -195833241 - L1MA8 LINE L1 -1 6290 6178 1248 240 73 23 chr1 86360710 86361064 -195832600 - MLT1A2 LTR MaLR 0 374 3 252 287 88 0 chr1 86361092 86361199 -195832465 - MIR SINE MIR -67 141 45 416 233 0 26 chr1 86361764 86361880 -195831784 + MIR SINE MIR 147 259 -3 1056 185 75 15 chr1 86364666 86364931 -195828733 - L1MC3 LINE L1 -600 7185 6905 * 1506 219 19 9 chr1 86364928 86365248 -195828416 - L1MC3 LINE L1 -1259 6526 6204 2460 200 111 61 chr1 86365885 86366921 -195826743 + L1MC4 LINE L1 4803 5403 -743 21 0 0 0 chr1 86367406 86367427 -195826237 + AT_rich Low_complexity Low_complexity 1 21 0 814 89 0 36 chr1 86367597 86367709 -195825955 - AluSg/x SINE Alu -17 295 188 2162 123 7 0 chr1 86368704 86369006 -195824658 + AluSx SINE Alu 1 304 -8 2182 120 3 3 chr1 86370010 86370309 -195823355 - AluSx SINE Alu -13 299 1 2370 120 65 18 chr1 86371201 86371600 -195822064 + L1PA13 LINE L1 5743 6160 -3 1121 249 67 23 chr1 86371600 86372034 -195821630 + L1MB7 LINE L1 5591 6043 -141 1885 174 32 59 chr1 86372478 86372885 -195820779 - Charlie1a DNA MER1_type -1026 429 34 331 209 209 0 chr1 86373182 86373297 -195820367 + MIR SINE MIR 123 261 -1 739 258 16 0 chr1 86373336 86373522 -195820142 - MER5A DNA MER1_type 0 189 1 437 165 9 113 chr1 86373544 86373606 -195820058 + Charlie1 DNA MER1_type 2650 2696 -65 2355 82 10 0 chr1 86373606 86373900 -195819764 - AluSq SINE Alu -16 297 1 437 165 9 113 chr1 86373900 86373952 -195819712 + Charlie1 DNA MER1_type 2696 2752 -9 368 284 80 99 chr1 86374415 86374899 -195818765 - L2 LINE L2 -3 3269 2788 1102 166 8 85 chr1 86374899 86375134 -195818530 - MER20 DNA MER1_type -2 217 1 368 284 80 99 chr1 86375134 86375155 -195818509 - L2 LINE L2 -484 2788 2768 1684 172 30 24 chr1 86375177 86375473 -195818191 - AluJb SINE Alu -14 298 1 551 331 82 51 chr1 86375475 86375985 -195817679 - L2 LINE L2 -538 2776 2251 2637 101 5 14 chr1 86378283 86378650 -195815014 - THE1B LTR MaLR 0 364 1 366 80 0 0 chr1 86379391 86379441 -195814223 + (TG)n Simple_repeat Simple_repeat 2 51 0 353 219 20 158 chr1 86380273 86380469 -195813195 + MER5B DNA MER1_type 7 175 -3 230 222 19 0 chr1 86380550 86380604 -195813060 + MER5A DNA MER1_type 135 189 0 23 54 0 0 chr1 86380827 86380864 -195812800 + AT_rich Low_complexity Low_complexity 1 37 0 3115 166 20 28 chr1 86380899 86381503 -195812161 - L1MA4 LINE L1 -20 6280 5682 429 224 0 26 chr1 86382022 86382138 -195811526 + MIR SINE MIR 147 259 -3 196 319 88 18 chr1 86382184 86382297 -195811367 + L2 LINE L2 3150 3270 -2 185 355 48 0 chr1 86383473 86383535 -195810129 + MIR SINE MIR 20 84 -178 1920 65 4 24 chr1 86383640 86383887 -195809777 + AluSc SINE Alu 49 290 -19 353 299 190 5 chr1 86384250 86384434 -195809230 - MIR SINE MIR -38 224 7 1002 242 151 23 chr1 86384555 86384906 -195808758 - MSTD LTR MaLR 0 396 1 358 347 53 6 chr1 86385207 86385377 -195808287 + MER115 DNA AcHobo 132 309 -384 644 305 34 0 chr1 86386508 86386685 -195806979 + MER91A DNA MER1_type 14 196 0 1032 137 0 0 chr1 86387212 86387365 -195806299 - L1PA8 LINE L1 0 6172 6020 1562 179 7 79 chr1 86387671 86387903 -195805761 - MLT1B LTR MaLR 0 390 143 1842 137 85 0 chr1 86387903 86388173 -195805491 - AluSx SINE Alu -19 293 1 1562 179 7 79 chr1 86388173 86388270 -195805394 - MLT1B LTR MaLR -247 143 95 7004 26 1 5 chr1 86388270 86389102 -195804562 + L1PA4 LINE L1 5327 6155 0 1562 179 7 79 chr1 86389102 86389191 -195804473 - MLT1B LTR MaLR -295 95 1 838 289 113 16 chr1 86390257 86390620 -195803044 + MLT1J2 LTR MaLR 39 436 -14 916 172 99 10 chr1 86391269 86391461 -195802203 - MER3 DNA MER1_type 0 209 1 260 309 57 24 chr1 86391618 86391741 -195801923 + L3 LINE CR1 243 369 -1208 249 277 148 10 chr1 86391753 86391854 -195801810 + L2 LINE L2 3193 3307 -6 397 279 52 37 chr1 86391996 86392132 -195801532 + MIR3 SINE MIR 8 145 -63 304 356 245 3 chr1 86392185 86392536 -195801128 + L3 LINE CR1 581 1016 -561 445 215 146 56 chr1 86392539 86392683 -195800981 - MER5B DNA MER1_type -21 157 1 299 275 152 34 chr1 86392800 86393069 -195800595 + L3 LINE CR1 1120 1420 -157 686 295 224 7 chr1 86393156 86393413 -195800251 + L2 LINE L2 2815 3015 -298 195 114 0 0 chr1 86393413 86393448 -195800216 + (CA)n Simple_repeat Simple_repeat 2 36 0 686 295 224 7 chr1 86393448 86393600 -195800064 + L2 LINE L2 3015 3313 0 4970 90 1 1 chr1 86394677 86395363 -195798301 - L1PB1 LINE L1 -5 6146 5461 277 254 0 17 chr1 86395898 86395957 -195797707 + MIR SINE MIR 18 75 -187 561 254 88 28 chr1 86396046 86396227 -195797437 - MIR SINE MIR -14 248 57 340 331 149 43 chr1 86397608 86397937 -195795727 - L2 LINE L2 -2 3270 2907 5327 133 15 34 chr1 86399300 86399706 -195793958 + L1PA15 LINE L1 4881 5293 -872 928 51 0 0 chr1 86399706 86399823 -195793841 + L1PA3 LINE L1 6036 6152 -3 5327 133 15 34 chr1 86399823 86400729 -195792935 + L1PA15 LINE L1 5293 6163 -2 336 366 176 6 chr1 86401218 86401554 -195792110 + L2 LINE L2 2877 3269 -3 2315 127 49 42 chr1 86403635 86404060 -195789604 - MSTA LTR MaLR 0 428 1 409 326 56 14 chr1 86404552 86404696 -195788968 + L2 LINE L2 3122 3271 -1 190 196 65 0 chr1 86404847 86404893 -195788771 - L3b LINE CR1 -115 1468 1420 2961 167 14 13 chr1 86406201 86406757 -195786907 + MER89 LTR ERV1 1 557 -2 255 180 131 0 chr1 86407973 86408034 -195785630 - MIR SINE MIR 0 262 194 443 261 72 66 chr1 86408040 86408301 -195785363 + MLT1H LTR MaLR 2 240 -309 29 0 0 0 chr1 86408455 86408484 -195785180 + AT_rich Low_complexity Low_complexity 1 29 0 3096 157 16 10 chr1 86408486 86409061 -195784603 - L1MB2 LINE L1 -5 6166 5589 301 313 170 0 chr1 86409121 86409268 -195784396 - MIR SINE MIR -70 192 21 310 191 170 88 chr1 86409546 86409693 -195783971 + MER91A DNA MER1_type 1 159 -37 349 372 78 0 chr1 86410077 86410268 -195783396 + MIR SINE MIR 55 260 -2 288 286 45 15 chr1 86410407 86410540 -195783124 + L3 LINE CR1 805 941 -636 455 81 14 14 chr1 86410891 86410965 -195782699 - L1PB4 LINE L1 -4 6152 6079 776 160 39 0 chr1 86410998 86411154 -195782510 + MER106B DNA MER1_type 898 1059 0 268 381 14 7 chr1 86411157 86411296 -195782368 - MIR SINE MIR -109 153 14 1916 167 0 3 chr1 86412378 86412683 -195780981 + AluJb SINE Alu 1 304 -8 249 208 0 0 chr1 86412778 86412826 -195780838 + MIR SINE MIR 116 163 -99 1273 179 64 69 chr1 86412826 86413117 -195780547 - MLT1C LTR MaLR 0 390 99 230 0 33 0 chr1 86413117 86413147 -195780517 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1640 115 123 12 chr1 86413149 86413402 -195780262 - AluSx SINE Alu -31 281 1 1273 179 64 69 chr1 86413402 86413529 -195780135 - MLT1C LTR MaLR -292 98 1 280 295 77 84 chr1 86413631 86413840 -195779824 - MIR3 SINE MIR -4 258 52 1576 149 8 0 chr1 86414328 86414563 -195779101 - AluSq SINE Alu -53 260 24 180 0 0 0 chr1 86416103 86416123 -195777541 + (T)n Simple_repeat Simple_repeat 1 20 0 2290 168 26 17 chr1 86416497 86416919 -195776745 - MSTB LTR MaLR 0 426 1 280 294 33 11 chr1 86417179 86417334 -195776330 + MIR SINE MIR 20 250 -12 622 223 92 58 chr1 86417549 86417841 -195775823 + MLT1J1 LTR MaLR 6 307 -139 1352 176 35 28 chr1 86418309 86418361 -195775303 + MER33 DNA MER1_type 1 51 -2534 2231 183 21 12 chr1 86418361 86418787 -195774877 - MSTB1 LTR MaLR -2 430 1 1352 176 35 28 chr1 86418787 86419052 -195774612 + MER33 DNA MER1_type 51 320 -4 266 280 168 0 chr1 86419154 86419261 -195774403 + MIR SINE MIR 138 262 0 20750 108 12 2 chr1 86419587 86423745 -195769919 - L1PA8 LINE L1 0 6487 2285 9962 134 18 16 chr1 86423743 86425419 -195768245 - L1PA8 LINE L1 -4773 1688 10 * 254 192 16 32 chr1 86425831 86425961 -195767703 + CT-rich Low_complexity Low_complexity 1 127 0 3103 190 55 40 chr1 86426232 86427357 -195766307 - L1MB7 LINE L1 0 6184 5045 199 318 56 93 chr1 86428598 86428812 -195764852 + L2 LINE L2 2858 3063 -209 1888 162 124 7 chr1 86431883 86432327 -195761337 - LTR54B LTR ERV1 0 498 3 315 0 0 0 chr1 86433169 86433204 -195760460 + (CA)n Simple_repeat Simple_repeat 2 36 0 25 65 0 0 chr1 86433265 86433311 -195760353 + AT_rich Low_complexity Low_complexity 1 46 0 463 274 65 59 chr1 86434496 86434682 -195758982 - MER5A DNA MER1_type -1 188 2 379 251 313 26 chr1 86436475 86436670 -195756994 + MIR SINE MIR 11 261 -1 216 97 0 0 chr1 86437146 86437177 -195756487 + (TTC)n Simple_repeat Simple_repeat 3 33 0 904 243 45 0 chr1 86437578 86437825 -195755839 - MIR SINE MIR -2 260 3 713 213 89 13 chr1 86438082 86438135 -195755529 - L1MA8 LINE L1 -10 6281 6233 324 0 0 0 chr1 86438135 86438171 -195755493 + (CA)n Simple_repeat Simple_repeat 2 37 0 713 213 89 13 chr1 86438171 86438352 -195755312 - L1MA8 LINE L1 -58 6233 6029 267 269 0 0 chr1 86438440 86438507 -195755157 - L1MC/D LINE L1 -2021 5787 5721 418 380 21 5 chr1 86438658 86438845 -195754819 + MIR SINE MIR 51 240 -22 216 268 0 18 chr1 86439193 86439249 -195754415 - MIR SINE MIR -206 56 2 508 292 84 26 chr1 86439268 86439494 -195754170 - MIR SINE MIR -1 261 23 507 306 117 0 chr1 86440316 86440496 -195753168 + MIR SINE MIR 52 252 -10 315 191 88 0 chr1 86441249 86441317 -195752347 - MIR3 SINE MIR -25 183 110 422 312 176 0 chr1 86442796 86442966 -195750698 + MIR SINE MIR 56 255 -7 306 276 16 55 chr1 86442970 86443097 -195750567 - MER5A DNA MER1_type -2 187 66 248 352 11 0 chr1 86443298 86443386 -195750278 - L2 LINE L2 0 3272 3184 518 219 13 46 chr1 86446533 86446684 -195746980 - Charlie8 DNA MER1_type -2193 224 79 2396 104 0 0 chr1 86447385 86447693 -195745971 + AluSq SINE Alu 1 308 -5 509 290 22 89 chr1 86448534 86448848 -195744816 - L2 LINE L2 -1 3312 3020 791 232 130 5 chr1 86448852 86449059 -195744605 - L2 LINE L2 -588 2726 2494 202 205 103 0 chr1 86449068 86449107 -195744557 - MIR3 SINE MIR -23 185 143 2286 93 10 3 chr1 86449205 86449507 -195744157 + AluSc SINE Alu 1 304 -5 317 311 84 17 chr1 86449577 86449696 -195743968 - MIR3 SINE MIR -52 156 30 23 0 0 0 chr1 86450185 86450208 -195743456 + AT_rich Low_complexity Low_complexity 1 23 0 312 334 35 45 chr1 86450633 86450944 -195742720 + L1ME LINE L1 5337 5644 -477 230 310 60 0 chr1 86451137 86451253 -195742411 - L1ME4a LINE L1 -30 6091 5969 22 56 0 0 chr1 86451431 86451467 -195742197 + AT_rich Low_complexity Low_complexity 1 36 0 23 92 0 0 chr1 86453334 86453399 -195740265 + AT_rich Low_complexity Low_complexity 1 65 0 732 305 45 19 chr1 86453542 86454300 -195739364 - L1ME4a LINE L1 -211 5951 5173 293 256 98 0 chr1 86454470 86454552 -195739112 + L1M4 LINE L1 4757 4846 -1300 267 260 0 0 chr1 86454670 86454766 -195738898 + (TA)n Simple_repeat Simple_repeat 2 97 0 405 265 116 67 chr1 86454780 86455255 -195738409 - L1ME4a LINE L1 -1176 4970 4473 289 28 0 0 chr1 86455290 86455326 -195738338 - U2 snRNA snRNA -152 36 1 2536 38 0 3 chr1 86455356 86455647 -195738017 - AluY SINE Alu -1 310 21 495 289 24 42 chr1 86455865 86456031 -195737633 - MIR SINE MIR -70 192 30 389 315 17 22 chr1 86457117 86457295 -195736369 + CT-rich Low_complexity Low_complexity 1 177 0 428 317 116 10 chr1 86457850 86458049 -195735615 + MIR SINE MIR 32 251 -11 655 261 33 0 chr1 86458093 86458277 -195735387 - MIR SINE MIR -10 252 63 186 323 0 15 chr1 86459019 86459084 -195734580 - MIR SINE MIR -10 252 189 429 247 120 62 chr1 86459450 86459709 -195733955 - L1ME4a LINE L1 -155 5966 5693 2079 102 6 60 chr1 86459891 86460206 -195733458 + AluSx SINE Alu 1 298 -14 444 37 0 0 chr1 86462550 86462604 -195731060 + (TG)n Simple_repeat Simple_repeat 2 55 0 914 171 56 60 chr1 86462609 86462878 -195730786 - ORSL DNA AcHobo -7 268 1 348 272 32 13 chr1 86462925 86463083 -195730581 + (CAGAGA)n Simple_repeat Simple_repeat 4 164 0 222 118 0 0 chr1 86464552 86464586 -195729078 + (T)n Simple_repeat Simple_repeat 1 34 0 420 272 44 22 chr1 86465060 86465196 -195728468 - MIR SINE MIR -113 149 11 298 241 24 12 chr1 86466352 86466435 -195727229 + MIR SINE MIR 49 132 -130 313 328 26 16 chr1 86467318 86467510 -195726154 - L1MC4a LINE L1 -1884 5924 5731 264 234 327 0 chr1 86467584 86467680 -195725984 - MIR SINE MIR -68 140 42 506 213 155 35 chr1 86469881 86470055 -195723609 - L3 LINE CR1 -195 1382 1188 213 325 113 33 chr1 86470058 86470332 -195723332 - L3 LINE CR1 -600 977 682 319 289 107 57 chr1 86470456 86470613 -195723051 - MIR3 SINE MIR -28 180 20 22 0 0 0 chr1 86471378 86471400 -195722264 + AT_rich Low_complexity Low_complexity 1 22 0 246 128 26 0 chr1 86472535 86472574 -195721090 - MIR SINE MIR 0 262 223 1987 166 123 27 chr1 86472586 86473074 -195720590 - MER34 LTR ERV1 0 542 8 371 389 40 0 chr1 86473676 86473802 -195719862 - L2 LINE L2 -8 3264 3134 21 0 0 0 chr1 86473806 86473827 -195719837 + AT_rich Low_complexity Low_complexity 1 21 0 199 269 128 0 chr1 86474132 86474210 -195719454 - MIR SINE MIR -87 175 88 480 339 51 0 chr1 86474595 86474790 -195718874 + MIR SINE MIR 46 250 -12 243 413 14 7 chr1 86475035 86475191 -195718473 - L2 LINE L2 -353 2919 2765 297 229 16 16 chr1 86476403 86476464 -195717200 - L2 LINE L2 -62 3210 3150 318 159 16 16 chr1 86477498 86477561 -195716103 - MIR SINE MIR -125 137 75 405 207 91 8 chr1 86477659 86477780 -195715884 + MER117 DNA MER1_type 59 189 -8 330 323 6 70 chr1 86477849 86478007 -195715657 - L2 LINE L2 -188 3084 2937 382 262 213 22 chr1 86478045 86478228 -195715436 - MIR SINE MIR -15 247 30 274 282 113 8 chr1 86478267 86478391 -195715273 - L2 LINE L2 -925 2389 2253 348 317 17 17 chr1 86479236 86479416 -195714248 - L1MEd LINE L1 -5492 627 448 530 243 14 14 chr1 86479618 86479758 -195713906 - MIR SINE MIR 0 262 123 3527 109 76 56 chr1 86479799 86480421 -195713243 - MER51A LTR ERV1 0 634 1 196 311 33 0 chr1 86481127 86481188 -195712476 - L2 LINE L2 -1 3271 3209 182 232 0 18 chr1 86481263 86481319 -195712345 + CT-rich Low_complexity Low_complexity 2 56 0 192 386 85 0 chr1 86482334 86482523 -195711141 - L2 LINE L2 -459 2855 2651 458 289 20 27 chr1 86482729 86482878 -195710786 - MIR SINE MIR -94 168 21 185 346 0 0 chr1 86485225 86485303 -195708361 - MIR SINE MIR -2 260 183 405 278 67 90 chr1 86485937 86486282 -195707382 + L2 LINE L2 2931 3267 -5 195 379 15 23 chr1 86487851 86487983 -195705681 + L2 LINE L2 2550 2680 -634 5806 70 0 8 chr1 86488025 86488815 -195704849 - L1PA7 LINE L1 0 6154 5371 3889 83 8 22 chr1 86488820 86489422 -195704242 + L1PA7 LINE L1 4782 5375 -771 186 225 0 0 chr1 86489617 86489657 -195704007 + L2 LINE L2 2944 2983 -330 225 94 0 0 chr1 86489935 86489967 -195703697 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 316 327 105 33 chr1 86489976 86490129 -195703535 - L2 LINE L2 -14 3258 3095 444 286 29 82 chr1 86492147 86492353 -195701311 + MIR SINE MIR 8 202 -60 992 264 67 96 chr1 86492512 86493333 -195700331 + L1ME3A LINE L1 5374 6170 0 25 0 0 0 chr1 86495223 86495248 -195698416 + AT_rich Low_complexity Low_complexity 1 25 0 196 114 68 0 chr1 86497227 86497271 -195696393 + (CATG)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chr1 86497390 86497413 -195696251 + (CA)n Simple_repeat Simple_repeat 2 24 0 434 281 104 91 chr1 86497558 86497943 -195695721 + MLT1K LTR MaLR 199 588 0 220 167 167 50 chr1 86498737 86498797 -195694867 - L2 LINE L2 -14 3299 3233 1171 115 12 0 chr1 86499281 86499446 -195694218 - AluSg/x SINE Alu -24 288 122 314 289 23 55 chr1 86499475 86499603 -195694061 + MER46C DNA MER2_type 215 338 0 229 274 151 0 chr1 86499990 86500063 -195693601 - L2 LINE L2 -18 3254 3171 230 257 136 29 chr1 86500154 86500294 -195693370 + L1ME4a LINE L1 5961 6115 -6 1892 142 10 3 chr1 86500294 86500582 -195693082 - AluSg SINE Alu -18 292 3 3065 171 66 2 chr1 86500711 86501320 -195692344 + L1MC3 LINE L1 7132 7779 -6 636 14 0 0 chr1 86501369 86501442 -195692222 - L1PA5 LINE L1 -8 6146 6074 547 32 0 0 chr1 86501442 86501505 -195692159 + L1PA5 LINE L1 5903 5965 -189 414 171 0 0 chr1 86501527 86501597 -195692067 - L2 LINE L2 -862 2452 2383 221 98 24 0 chr1 86502154 86502195 -195691469 + (TTA)n Simple_repeat Simple_repeat 2 43 0 367 215 148 22 chr1 86502452 86502587 -195691077 - MLT1H LTR MaLR -16 533 425 339 273 128 47 chr1 86503508 86503647 -195690017 - L1M4 LINE L1 -2203 3943 3817 1704 185 84 33 chr1 86503647 86503688 -195689976 - MLT2D LTR ERVL 0 414 377 459 92 0 0 chr1 86503688 86503753 -195689911 + (TG)n Simple_repeat Simple_repeat 2 66 0 1704 185 84 33 chr1 86503753 86504033 -195689631 - MLT2D LTR ERVL -37 377 67 2014 140 0 0 chr1 86504033 86504319 -195689345 - AluSx SINE Alu -26 286 1 1704 185 84 33 chr1 86504319 86504390 -195689274 - MLT2D LTR ERVL -347 67 1 339 273 128 47 chr1 86504390 86504422 -195689242 - L1M4 LINE L1 -2329 3817 3758 381 315 68 6 chr1 86504425 86504587 -195689077 - MIR SINE MIR -76 186 15 21 0 0 0 chr1 86505360 86505381 -195688283 + AT_rich Low_complexity Low_complexity 1 21 0 1158 65 0 0 chr1 86605591 86605744 -195587920 - L1PA4 LINE L1 0 6155 6003 1574 187 63 19 chr1 86605744 86606107 -195587557 - MSTD LTR MaLR -4 392 14 3073 244 123 85 chr1 86606129 86607700 -195585964 - MSTD-int LTR MaLR -16 1635 6 1476 209 87 11 chr1 86607706 86608074 -195585590 - MSTD LTR MaLR 0 396 1 1197 176 50 0 chr1 86608430 86608651 -195585013 + MER46A DNA MER2_type 1 232 -4 1880 126 4 7 chr1 86609641 86609918 -195583746 - AluSq SINE Alu -3 310 35 314 327 173 7 chr1 86610852 86611002 -195582662 + MLT1J LTR MaLR 13 187 -324 2168 110 7 13 chr1 86611040 86611340 -195582324 + AluSx SINE Alu 1 298 -14 967 278 20 28 chr1 86611897 86612267 -195581397 + L1ME1 LINE L1 3975 4342 -1804 183 80 0 0 chr1 86612267 86612292 -195581372 + (CATATA)n Simple_repeat Simple_repeat 3 27 0 967 278 20 28 chr1 86612292 86612378 -195581286 + L1ME1 LINE L1 4342 4427 -1719 444 289 70 0 chr1 86612378 86612506 -195581158 + LTR40b LTR ERVL 3 139 -323 1150 204 32 7 chr1 86612510 86612819 -195580845 + L1ME1 LINE L1 4611 4927 -1219 1495 176 97 46 chr1 86612825 86613356 -195580308 - MLT2A2 LTR ERVL 0 554 1 1777 241 76 15 chr1 86613363 86613968 -195579696 + L1ME1 LINE L1 5525 6166 0 2098 108 18 0 chr1 86614337 86614665 -195578999 + AluSx SINE Alu 1 333 0 246 32 0 0 chr1 86615320 86615351 -195578313 + (TC)n Simple_repeat Simple_repeat 2 32 0 249 33 0 0 chr1 86615352 86615382 -195578282 + (CA)n Simple_repeat Simple_repeat 2 31 0 183 42 0 0 chr1 86615386 86615410 -195578254 + (GA)n Simple_repeat Simple_repeat 1 24 0 23 68 0 0 chr1 86615522 86615566 -195578098 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr1 86618610 86618663 -195575001 + AT_rich Low_complexity Low_complexity 1 53 0 2037 158 115 16 chr1 86618663 86619088 -195574576 + MLT1C LTR MaLR 1 467 0 597 281 76 5 chr1 86619954 86620164 -195573500 - MIR SINE MIR -18 244 20 21 0 0 0 chr1 86620267 86620288 -195573376 + AT_rich Low_complexity Low_complexity 1 21 0 196 276 276 0 chr1 86620803 86620890 -195572774 - L2 LINE L2 -14 3258 3148 36 23 0 0 chr1 86620904 86620947 -195572717 + AT_rich Low_complexity Low_complexity 1 43 0 2306 163 40 18 chr1 86621161 86621616 -195572048 + MLT1C LTR MaLR 3 467 0 408 265 127 49 chr1 86621723 86621968 -195571696 - L1ME3 LINE L1 -281 5881 5618 390 303 18 30 chr1 86622153 86622318 -195571346 - L2 LINE L2 -191 3081 2919 536 203 189 33 chr1 86623521 86623674 -195569990 + MER5B DNA MER1_type 1 177 -1 332 328 0 1 chr1 86624708 86624808 -195568856 + MIR SINE MIR 8 106 -102 1829 191 32 0 chr1 86624811 86625152 -195568512 - MLT1A1 LTR MaLR -5 360 9 197 247 101 45 chr1 86625178 86625267 -195568397 + MIR SINE MIR 128 221 -41 1744 178 7 3 chr1 86625292 86625595 -195568069 - AluJb SINE Alu -8 304 1 905 253 90 4 chr1 86625610 86625843 -195567821 - MIR SINE MIR -5 257 5 411 341 40 16 chr1 86626380 86626629 -195567035 + L2 LINE L2 1709 1963 -1351 582 272 72 54 chr1 86626635 86626970 -195566694 + L2 LINE L2 2804 3144 -169 197 349 20 46 chr1 86627151 86627303 -195566361 + L2 LINE L2 2633 2780 -534 793 223 97 0 chr1 86627658 86627864 -195565800 - MIR SINE MIR -4 258 33 282 132 0 0 chr1 86628119 86628172 -195565492 + (GA)n Simple_repeat Simple_repeat 2 54 0 271 258 76 0 chr1 86628735 86628801 -195564863 + L2 LINE L2 3202 3272 0 537 325 30 10 chr1 86629120 86629317 -195564347 - MIR SINE MIR -14 248 48 482 0 17 0 chr1 86629332 86629390 -195564274 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 380 410 50 21 chr1 86629492 86629868 -195563796 - L2 LINE L2 -673 2641 2255 988 293 34 60 chr1 86630583 86631119 -195562545 + LTR67 LTR ERVL 20 541 -16 524 302 134 4 chr1 86632430 86632662 -195561002 + MIR SINE MIR 1 262 0 183 239 284 11 chr1 86632981 86633069 -195560595 - MIR3 SINE MIR -14 194 83 647 131 10 0 chr1 86633487 86633586 -195560078 - U6 snRNA snRNA -6 101 2 309 272 32 48 chr1 86633677 86633802 -195559862 - L2 LINE L2 -515 2799 2677 184 153 56 14 chr1 86633921 86633993 -195559671 + GA-rich Low_complexity Low_complexity 3 77 0 219 200 44 0 chr1 86634845 86634890 -195558774 + L2 LINE L2 3266 3312 -1 245 313 23 51 chr1 86636134 86636310 -195557354 - MLT1J LTR MaLR -51 460 290 195 242 75 150 chr1 86636820 86636940 -195556724 + L2 LINE L2 3137 3247 -25 2161 104 0 7 chr1 86636950 86637238 -195556426 - AluSc SINE Alu 0 309 24 344 359 21 17 chr1 86637260 86637441 -195556223 + MIR SINE MIR 22 206 -56 233 338 169 0 chr1 86637922 86638058 -195555606 + L3b LINE CR1 1339 1497 -86 187 256 122 12 chr1 86638196 86638278 -195555386 - MIR SINE MIR -50 212 122 7432 37 1 0 chr1 86638379 86639352 -195554312 - L1P LINE L1 -2625 3521 2548 2824 92 8 10 chr1 86639352 86642699 -195550965 + L1P3 LINE L1 2151 5689 -465 4122 59 4 0 chr1 86642700 86643225 -195550439 + L1PA7 LINE L1 5628 6154 0 4975 186 51 26 chr1 86643256 86643780 -195549884 + L1MB1 LINE L1 4010 4519 -1649 1329 202 58 47 chr1 86643780 86644072 -195549592 + MLT1A1 LTR MaLR 1 299 -66 2167 98 17 0 chr1 86644072 86644236 -195549428 - AluSc SINE Alu -17 292 119 279 0 0 0 chr1 86644236 86644267 -195549397 + (TG)n Simple_repeat Simple_repeat 2 32 0 2167 98 17 0 chr1 86644267 86644389 -195549275 - AluSc SINE Alu -190 119 1 1329 202 58 47 chr1 86644389 86644457 -195549207 + MLT1A1 LTR MaLR 299 365 0 4975 186 51 26 chr1 86644457 86646035 -195547629 + L1MB1 LINE L1 4519 6167 -1 1106 329 113 25 chr1 86648140 86649211 -195544453 - L2 LINE L2 -1 3312 2149 788 315 98 33 chr1 86649211 86649731 -195543933 - L2 LINE L2 -2430 884 331 * 951 147 32 13 chr1 86649709 86649866 -195543798 - MER5A DNA MER1_type -23 166 7 210 254 148 25 chr1 86649875 86649997 -195543667 - L2 LINE L2 -2960 354 218 753 230 163 45 chr1 86650563 86650876 -195542788 - MLT1K LTR MaLR -113 475 126 426 307 90 26 chr1 86650983 86651172 -195542492 - MIR SINE MIR -1 261 61 282 231 13 26 chr1 86652814 86652892 -195540772 - L2 LINE L2 -1 3271 3195 300 252 47 28 chr1 86653200 86653307 -195540357 - L1ME4a LINE L1 -22 6099 5991 180 0 0 0 chr1 86653344 86653364 -195540300 + (CA)n Simple_repeat Simple_repeat 1 20 0 624 303 124 47 chr1 86653462 86654135 -195539529 - L2 LINE L2 0 3313 2573 337 271 80 20 chr1 86655025 86655176 -195538488 + MIR SINE MIR 21 180 -82 340 179 106 32 chr1 86655833 86655956 -195537708 - L1M4 LINE L1 -6403 139 8 1870 278 52 32 chr1 86655961 86656792 -195536872 - L1MEc LINE L1 -5516 880 34 545 334 41 41 chr1 86659194 86659610 -195534054 + L1ME4a LINE L1 5528 5943 -178 25 0 0 0 chr1 86659695 86659720 -195533944 + AT_rich Low_complexity Low_complexity 1 25 0 335 40 80 0 chr1 86659767 86659817 -195533847 - MADE1 DNA Mariner -26 54 1 234 0 0 0 chr1 86660571 86660597 -195533067 + (CATTT)n Simple_repeat Simple_repeat 3 28 0 397 287 32 51 chr1 86660802 86661116 -195532548 - L1ME4a LINE L1 -219 5951 5644 26 0 0 0 chr1 86661654 86661680 -195531984 + AT_rich Low_complexity Low_complexity 1 26 0 1331 262 64 74 chr1 86662359 86662580 -195531084 + L1M4 LINE L1 2608 2830 -3316 649 93 68 0 chr1 86662580 86662698 -195530966 + L1MA9 LINE L1 6176 6301 -11 1331 262 64 74 chr1 86662698 86664053 -195529611 + L1M4 LINE L1 2830 4168 -1978 1694 272 67 22 chr1 86664117 86664789 -195528875 - HsTC2c DNA Tc2 -5 724 23 238 219 62 0 chr1 86664819 86664883 -195528781 + L1M4 LINE L1 4285 4352 -1794 378 0 0 0 chr1 86666336 86666378 -195527286 + (TG)n Simple_repeat Simple_repeat 2 43 0 29 28 0 0 chr1 86666378 86666414 -195527250 + AT_rich Low_complexity Low_complexity 1 36 0 766 232 191 0 chr1 86666706 86666926 -195526738 + MIR SINE MIR 1 262 0 215 317 79 30 chr1 86669035 86669136 -195524528 - L3b LINE CR1 -37 1546 1441 2332 89 3 3 chr1 86669433 86669735 -195523929 - AluSg1 SINE Alu -7 302 1 2136 161 78 2 chr1 86670506 86670904 -195522760 + MSTA LTR MaLR 1 428 0 228 254 34 0 chr1 86671745 86671804 -195521860 + GA-rich Low_complexity Low_complexity 4 64 0 566 282 17 40 chr1 86672292 86672466 -195521198 + MIR3 SINE MIR 38 207 -1 269 300 172 26 chr1 86674057 86674284 -195519380 - MLT1J2 LTR MaLR 0 450 191 253 280 40 0 chr1 86674656 86674731 -195518933 + L2 LINE L2 3236 3313 0 216 67 0 0 chr1 86674979 86675009 -195518655 + (TC)n Simple_repeat Simple_repeat 1 30 0 498 264 26 116 chr1 86675040 86675485 -195518179 - MLT1J2 LTR MaLR -2 448 61 1491 170 52 40 chr1 86675934 86676263 -195517401 + MER1B DNA MER1_type 7 339 0 778 207 58 0 chr1 86676408 86676582 -195517082 - L1MB7 LINE L1 -62 6122 5939 307 283 33 42 chr1 86676584 86676704 -195516960 - L1MB7 LINE L1 -350 5771 5653 211 196 0 36 chr1 86676704 86676740 -195516924 + T-rich Low_complexity Low_complexity 1 36 -18 900 181 13 26 chr1 86676740 86676972 -195516692 - L1MA8 LINE L1 -3 6288 6060 211 196 0 36 chr1 86676972 86676991 -195516673 + T-rich Low_complexity Low_complexity 36 54 0 1797 144 42 69 chr1 86678225 86678266 -195515398 - L1MA8 LINE L1 -218 6073 6032 2394 86 0 0 chr1 86678266 86678567 -195515097 - AluSp SINE Alu -7 306 6 1797 144 42 69 chr1 86678567 86678666 -195514998 - L1MA8 LINE L1 -259 6032 5932 2774 10 0 0 chr1 86678666 86678969 -195514695 - AluYb8 SINE Alu -15 303 1 1797 144 42 69 chr1 86678969 86679138 -195514526 - L1MA8 LINE L1 -359 5932 5774 381 43 0 0 chr1 86679138 86679185 -195514479 + (CA)n Simple_repeat Simple_repeat 2 48 0 1797 144 42 69 chr1 86679185 86679277 -195514387 - L1MA8 LINE L1 -517 5774 5681 630 279 85 14 chr1 86679576 86679992 -195513672 - L1ME3A LINE L1 -223 5947 5496 673 313 30 26 chr1 86680007 86680537 -195513127 - L1ME3A LINE L1 -879 5267 4736 354 289 99 9 chr1 86680586 86680797 -195512867 - L1ME3A LINE L1 -1593 4553 4324 535 288 171 29 chr1 86680888 86682120 -195511544 - L1ME3A LINE L1 -2208 3938 2522 941 251 87 22 chr1 86682197 86682520 -195511144 - L2 LINE L2 -1078 2236 1893 1276 293 91 53 chr1 86683352 86683870 -195509794 + MER115 DNA AcHobo 2 499 -194 2700 133 24 5 chr1 86683870 86684290 -195509374 + MSTA LTR MaLR 1 428 0 9202 174 24 2 chr1 86684290 86685906 -195507758 + MSTA-int LTR MaLR 1 1651 0 2521 138 26 9 chr1 86685906 86686327 -195507337 + MSTA LTR MaLR 1 428 0 1276 293 91 53 chr1 86686327 86686468 -195507196 + MER115 DNA AcHobo 498 688 -5 320 349 59 26 chr1 86686947 86687099 -195506565 + L2 LINE L2 3116 3272 0 254 264 157 41 chr1 86688085 86688206 -195505458 + MIR3 SINE MIR 1 135 -73 646 169 155 35 chr1 86688752 86688894 -195504770 + MIR SINE MIR 3 161 -101 258 306 35 0 chr1 86688969 86689054 -195504610 + L3 LINE CR1 1489 1576 -1 227 200 22 0 chr1 86689775 86689820 -195503844 + MER5B DNA MER1_type 69 114 -64 296 161 0 36 chr1 86691915 86691971 -195501693 + L2 LINE L2 3256 3309 -4 2702 259 48 83 chr1 86692195 86692988 -195500676 - L2 LINE L2 -1 3312 2553 248 53 0 0 chr1 86692988 86693026 -195500638 - L1MA3 LINE L1 0 6305 6268 2702 259 48 83 chr1 86693026 86693600 -195500064 - L2 LINE L2 -760 2553 1960 366 304 49 93 chr1 86693600 86693804 -195499860 - MER91A DNA MER1_type 0 196 2 1039 255 92 0 chr1 86693807 86694089 -195499575 - L2 LINE L2 -1350 1964 1657 883 290 148 11 chr1 86694100 86694724 -195498940 + L2 LINE L2 2591 3308 -5 390 284 63 53 chr1 86695008 86695198 -195498466 + MIR SINE MIR 20 211 -51 1848 186 31 20 chr1 86700524 86700970 -195492694 - L1MB4 LINE L1 -17 6163 5713 465 225 62 38 chr1 86703770 86703930 -195489734 + LTR41 LTR ERVL 42 205 -568 1170 204 48 89 chr1 86703951 86704226 -195489438 + LTR41 LTR ERVL 346 598 -175 2488 58 0 55 chr1 86704226 86704555 -195489109 - AluY SINE Alu 0 311 1 1170 204 48 89 chr1 86704555 86704715 -195488949 + LTR41 LTR ERVL 598 763 -10 263 145 48 0 chr1 86706206 86706268 -195487396 + LTR41 LTR ERVL 603 667 -106 383 309 29 0 chr1 86706417 86706556 -195487108 - MIR SINE MIR -6 256 114 301 270 68 0 chr1 86706563 86706637 -195487027 - L2 LINE L2 -23 3249 3171 2365 120 22 27 chr1 86706637 86707038 -195486626 + MSTB LTR MaLR 1 399 -27 359 37 0 37 chr1 86707038 86707092 -195486572 + (TTTCC)n Simple_repeat Simple_repeat 2 53 0 2015 134 10 3 chr1 86707104 86707395 -195486269 - AluSq SINE Alu -20 293 1 261 128 0 0 chr1 86707395 86707434 -195486230 + MSTB LTR MaLR 390 428 0 183 264 45 127 chr1 86707434 86707544 -195486120 - L2 LINE L2 -97 3175 3075 1554 196 69 17 chr1 86707594 86707941 -195485723 + MLT1A1 LTR MaLR 1 365 0 422 256 64 24 chr1 86708064 86708189 -195485475 + MIR SINE MIR 104 233 -29 219 69 0 0 chr1 86708469 86708498 -195485166 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1791 199 19 25 chr1 86709611 86710078 -195483586 + MER101B LTR ERV1 1 412 -62 309 140 0 0 chr1 86710080 86710137 -195483527 + (TG)n Simple_repeat Simple_repeat 2 58 0 2074 141 86 30 chr1 86710346 86710751 -195482913 + MSTA LTR MaLR 1 428 0 397 325 5 33 chr1 86711001 86711213 -195482451 + MLT1H LTR MaLR 52 257 -292 237 287 74 66 chr1 86711368 86711490 -195482174 + MIR SINE MIR 81 203 -59 594 160 23 0 chr1 86711491 86711622 -195482042 + (TA)n Simple_repeat Simple_repeat 1 134 0 212 291 18 0 chr1 86711710 86711765 -195481899 + L2 LINE L2 2956 3011 -302 709 220 136 18 chr1 86711767 86712053 -195481611 - L1MEc LINE L1 -5267 1129 810 198 0 0 0 chr1 86712053 86712075 -195481589 + (T)n Simple_repeat Simple_repeat 1 22 0 6735 31 2 1 chr1 86712448 86713286 -195480378 - L1PA4 LINE L1 -2 6153 5315 2270 106 3 0 chr1 86713648 86713941 -195479723 - AluSc SINE Alu -15 294 1 282 216 0 0 chr1 86714300 86714351 -195479313 - MIR SINE MIR -140 122 72 240 330 68 11 chr1 86714521 86714609 -195479055 - MIR SINE MIR -158 104 12 5894 183 31 5 chr1 86715379 86717248 -195476416 - L1MC1 LINE L1 -5 6826 4907 450 259 150 0 chr1 86717592 86717739 -195475925 + MIR SINE MIR 20 188 -74 21 0 0 0 chr1 86718014 86718035 -195475629 + AT_rich Low_complexity Low_complexity 1 21 0 2290 109 17 3 chr1 86719597 86719945 -195473719 + THE1C LTR MaLR 23 375 0 2153 132 41 41 chr1 86720166 86720583 -195473081 - MSTB LTR MaLR -6 420 4 274 301 68 32 chr1 86720823 86721072 -195472592 - L1MC1 LINE L1 -2740 3904 3647 * 910 293 99 29 chr1 86721055 86722560 -195471104 - L1MC1 LINE L1 -3568 3076 1285 23 68 0 0 chr1 86723981 86724025 -195469639 + AT_rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr1 86724137 86724161 -195469503 + (TC)n Simple_repeat Simple_repeat 1 24 0 285 29 0 0 chr1 86724165 86724199 -195469465 + (TG)n Simple_repeat Simple_repeat 2 35 0 246 32 0 0 chr1 86724200 86724231 -195469433 + (GA)n Simple_repeat Simple_repeat 2 32 0 2085 112 18 0 chr1 86724886 86725218 -195468446 - AluSx SINE Alu 0 337 1 1777 241 76 15 chr1 86725587 86726192 -195467472 - L1ME1 LINE L1 0 6166 5525 1431 173 151 24 chr1 86726199 86726705 -195466959 + MLT2A2 LTR ERVL 1 554 0 1143 204 32 7 chr1 86726711 86727020 -195466644 - L1ME1 LINE L1 -1219 4927 4611 444 289 70 0 chr1 86727024 86727152 -195466512 - LTR40b LTR ERVL -323 139 3 931 281 20 33 chr1 86727152 86727238 -195466426 - L1ME1 LINE L1 -1719 4427 4341 183 80 0 0 chr1 86727238 86727263 -195466401 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 931 281 20 33 chr1 86727263 86727635 -195466029 - L1ME1 LINE L1 -1805 4341 3975 2186 104 7 13 chr1 86728192 86728490 -195465174 - AluSx SINE Alu -16 296 1 314 327 173 7 chr1 86728528 86728678 -195464986 - MLT1J LTR MaLR -324 187 13 1937 119 4 7 chr1 86729611 86729888 -195463776 + AluSq SINE Alu 35 310 -3 1200 176 50 0 chr1 86730878 86731099 -195462565 - MER46A DNA MER2_type -4 232 1 1493 202 90 11 chr1 86731577 86731944 -195461720 + MSTD LTR MaLR 1 396 0 3071 240 96 38 chr1 86731950 86733521 -195460143 + MSTD-int LTR MaLR 5 1720 -15 1602 184 63 19 chr1 86733543 86733908 -195459756 + MSTD LTR MaLR 14 394 -2 1167 60 0 0 chr1 86733909 86734060 -195459604 + L1PA4 LINE L1 6005 6155 0 1161 256 193 22 chr1 86734129 86734586 -195459078 + MLT1E LTR MaLR 57 591 -2 387 367 177 0 chr1 86734669 86734895 -195458769 + L2 LINE L2 2220 2485 -829 195 315 35 113 chr1 86734895 86735091 -195458573 + L2 LINE L2 2693 2866 -448 1996 163 76 22 chr1 86735091 86735497 -195458167 - MSTA LTR MaLR 0 428 1 195 315 35 113 chr1 86735497 86735557 -195458107 + L2 LINE L2 2866 2929 -385 281 379 0 0 chr1 86735845 86735932 -195457732 + L2 LINE L2 3139 3225 -47 1243 215 109 20 chr1 86735936 86736085 -195457579 - L1ME LINE L1 -730 5432 5298 355 68 34 0 chr1 86736085 86736144 -195457520 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1243 215 109 20 chr1 86736144 86736543 -195457121 - L1ME LINE L1 -864 5298 4822 317 329 216 11 chr1 86738867 86739214 -195454450 - L3 LINE CR1 -23 1554 1137 229 380 46 0 chr1 86739283 86739499 -195454165 + L1ME LINE L1 5312 5537 -584 2144 134 0 0 chr1 86739850 86740155 -195453509 + AluSx SINE Alu 2 306 -6 246 306 120 37 chr1 86740283 86740525 -195453139 - L3 LINE CR1 -656 921 660 22 0 0 0 chr1 86740577 86740599 -195453065 + AT_rich Low_complexity Low_complexity 1 22 0 780 258 162 11 chr1 86742014 86742379 -195451285 + MLT1J2 LTR MaLR 4 423 -27 774 222 82 5 chr1 86742401 86742595 -195451069 + MIR SINE MIR 24 232 -30 209 163 20 0 chr1 86742761 86742810 -195450854 + GA-rich Low_complexity Low_complexity 4 53 0 2609 0 7 0 chr1 86743007 86743290 -195450374 + AluYa5 SINE Alu 27 311 0 574 329 36 6 chr1 86744758 86744925 -195448739 + MIR3 SINE MIR 16 187 -21 259 306 0 10 chr1 86745860 86745958 -195447706 + (TA)n Simple_repeat Simple_repeat 1 97 0 207 69 0 0 chr1 86746761 86746790 -195446874 + (GGAGA)n Simple_repeat Simple_repeat 3 31 0 233 276 0 0 chr1 86749057 86749115 -195444549 + (CAT)n Simple_repeat Simple_repeat 2 59 0 207 100 0 0 chr1 86749359 86749389 -195444275 + (GAAAA)n Simple_repeat Simple_repeat 5 34 0 21 0 0 0 chr1 86750819 86750840 -195442824 + AT_rich Low_complexity Low_complexity 1 21 0 304 323 21 21 chr1 86751114 86751207 -195442457 - L2 LINE L2 -18 3295 3203 273 348 18 50 chr1 86751224 86751445 -195442219 - L2 LINE L2 -232 3081 2868 217 235 0 44 chr1 86752482 86752550 -195441114 + T-rich Low_complexity Low_complexity 4 68 0 351 322 164 20 chr1 86752654 86752806 -195440858 - L2 LINE L2 0 3272 3099 472 291 45 17 chr1 86752826 86753005 -195440659 + MIR3 SINE MIR 16 199 -9 413 147 0 27 chr1 86755293 86755368 -195438296 - MER20 DNA MER1_type -1 218 146 1200 175 57 93 chr1 86757187 86757575 -195436089 + MLT1A2 LTR MaLR 1 374 0 283 326 84 90 chr1 86757816 86758150 -195435514 - L2 LINE L2 -2 3270 2939 305 353 30 25 chr1 86759090 86759291 -195434373 + MLT1I LTR MaLR 71 272 -137 551 230 204 17 chr1 86759467 86759680 -195433984 - MIR SINE MIR -14 248 1 316 373 38 25 chr1 86759715 86759873 -195433791 + MIR3 SINE MIR 40 199 -9 209 270 0 0 chr1 86760234 86760271 -195433393 + L3 LINE CR1 1519 1555 -22 213 194 0 240 chr1 86763172 86763225 -195430439 - MER5B DNA MER1_type -80 98 92 2523 56 0 0 chr1 86763225 86763527 -195430137 - AluY SINE Alu -7 304 3 213 194 0 240 chr1 86763527 86763602 -195430062 - MER5B DNA MER1_type -86 92 1 195 137 39 118 chr1 86763825 86763876 -195429788 + L2 LINE L2 3261 3307 -6 2083 154 120 5 chr1 86764063 86764446 -195429218 - MSTA LTR MaLR 0 428 2 45 34 0 0 chr1 86766688 86766747 -195426917 + AT_rich Low_complexity Low_complexity 1 59 0 241 285 29 64 chr1 86767835 86768116 -195425548 + L1M4 LINE L1 3586 3856 -2290 485 197 29 15 chr1 86768197 86768334 -195425330 + MER103 DNA DNA 21 159 -7 290 347 18 18 chr1 86768447 86768724 -195424940 + L1M4 LINE L1 3875 4151 -1995 252 114 0 0 chr1 86768879 86768914 -195424750 - Alu SINE Alu -262 39 5 22 0 0 0 chr1 86769241 86769263 -195424401 + AT_rich Low_complexity Low_complexity 1 22 0 459 0 0 0 chr1 86769321 86769372 -195424292 + (CA)n Simple_repeat Simple_repeat 2 52 0 779 286 46 36 chr1 86769412 86769692 -195423972 + L2 LINE L2 3031 3313 0 263 354 14 48 chr1 86770122 86770269 -195423395 + MER91A DNA MER1_type 1 142 -54 373 236 0 22 chr1 86770283 86770372 -195423292 + MER21B LTR ERV1 1 87 -776 2381 258 71 7 chr1 86770397 86771091 -195422573 + MER21B LTR ERV1 19 756 -107 6353 85 0 61 chr1 86771235 86772079 -195421585 - L1PA10 LINE L1 -3 6165 5342 2272 120 10 0 chr1 86772079 86772388 -195421276 - AluSx SINE Alu 0 312 1 6353 85 0 61 chr1 86772388 86772549 -195421115 - L1PA10 LINE L1 -826 5342 5173 244 288 161 44 chr1 86773149 86773510 -195420154 - L2 LINE L2 -863 2451 2049 919 168 0 0 chr1 86774151 86774288 -195419376 + FRAM SINE Alu 18 154 -22 1597 260 47 22 chr1 86774447 86775113 -195418551 - L1ME3A LINE L1 -219 5951 5270 256 226 0 24 chr1 86775204 86775288 -195418376 + (TTAA)n Simple_repeat Simple_repeat 1 82 0 180 200 0 0 chr1 86775610 86775650 -195418014 + (CA)n Simple_repeat Simple_repeat 2 41 0 280 175 100 67 chr1 86776298 86776418 -195417246 + MIR SINE MIR 123 246 -16 231 36 0 0 chr1 86776735 86776763 -195416901 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1581 158 13 56 chr1 86776763 86777066 -195416598 - AluJb SINE Alu -18 294 5 184 319 128 32 chr1 86777437 86777531 -195416133 + L2 LINE L2 3168 3270 -2 1587 201 29 35 chr1 86777604 86777978 -195415686 - MLT1A2 LTR MaLR -2 372 1 423 0 0 0 chr1 86778206 86778253 -195415411 + (CA)n Simple_repeat Simple_repeat 2 48 0 2135 61 18 0 chr1 86778408 86778685 -195414979 + L1PA8 LINE L1 5885 6166 -6 1672 186 57 28 chr1 86779684 86780038 -195413626 + MLT1A1 LTR MaLR 2 365 0 335 123 15 15 chr1 86780488 86780553 -195413111 - MLT1A1 LTR MaLR -299 66 2 340 395 56 6 chr1 86781556 86781718 -195411946 - L2 LINE L2 -17 3255 3086 392 266 40 40 chr1 86781894 86782071 -195411593 + MER5B DNA MER1_type 1 177 -1 183 80 0 0 chr1 86782266 86782291 -195411373 + (TG)n Simple_repeat Simple_repeat 1 25 0 2882 129 24 7 chr1 86782478 86782928 -195410736 + LTR22A LTR ERVK 1 458 0 490 181 69 14 chr1 86782948 86783092 -195410572 + L1MC3 LINE L1 7575 7726 -59 286 152 19 38 chr1 86783296 86783401 -195410263 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 237 256 85 123 chr1 86784067 86784278 -195409386 + L2 LINE L2 3065 3267 -5 518 317 119 38 chr1 86785493 86785973 -195407691 + L2 LINE L2 2327 2845 -469 185 235 44 88 chr1 86786053 86786121 -195407543 - L2 LINE L2 -8 3305 3241 405 330 24 94 chr1 86786158 86786455 -195407209 + L2 LINE L2 2995 3270 -2 226 356 23 0 chr1 86786697 86786750 -195406914 + L2 LINE L2 2928 2985 -287 312 102 0 0 chr1 86786750 86786799 -195406865 + (CA)n Simple_repeat Simple_repeat 2 50 0 226 356 23 0 chr1 86786799 86786832 -195406832 + L2 LINE L2 2985 3016 -256 358 289 41 8 chr1 86787077 86787198 -195406466 - MIR SINE MIR -61 201 77 21 0 0 0 chr1 86787335 86787356 -195406308 + AT_rich Low_complexity Low_complexity 1 21 0 1271 246 81 28 chr1 86788929 86789426 -195404238 - LTR33A LTR ERVL 0 523 1 436 280 191 0 chr1 86790253 86790421 -195403243 - MIR SINE MIR -12 250 51 2270 105 0 3 chr1 86792565 86792869 -195400795 - AluSx SINE Alu -9 303 1 597 292 126 18 chr1 86792887 86793164 -195400500 - MLT1I LTR MaLR -4 405 99 716 249 69 5 chr1 86793771 86793960 -195399704 + MIR SINE MIR 58 258 -4 449 343 56 5 chr1 86794005 86794203 -195399461 + L3 LINE CR1 866 1073 -504 504 296 133 5 chr1 86795205 86795408 -195398256 + L3 LINE CR1 1290 1518 -59 862 280 103 7 chr1 86795408 86795679 -195397985 + MLT1G LTR MaLR 1 297 -293 1153 239 37 31 chr1 86795701 86796226 -195397438 + Charlie7 DNA MER1_type 79 685 -1927 445 130 13 0 chr1 86796266 86796343 -195397321 + MER116 DNA Mariner 3 80 0 2073 224 52 71 chr1 86797681 86798802 -195394862 + L1MC5 LINE L1 6866 7935 -26 219 103 0 0 chr1 86800996 86801035 -195392629 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 210 280 0 0 chr1 86802534 86802584 -195391080 + L2 LINE L2 3264 3313 0 478 323 15 58 chr1 86803335 86803595 -195390069 + L3 LINE CR1 1327 1575 -2 381 286 89 0 chr1 86803876 86803988 -195389676 + L2 LINE L2 3184 3305 -8 184 164 0 164 chr1 86805598 86805659 -195388005 - L2 LINE L2 -1 3312 3262 363 346 193 20 chr1 86806909 86807600 -195386064 - L2 LINE L2 -898 2416 1607 346 265 131 7 chr1 86809661 86809799 -195383865 + MIR SINE MIR 20 172 -85 187 256 47 0 chr1 86809862 86809905 -195383759 - L2 LINE L2 -42 3230 3186 259 264 22 22 chr1 86810871 86810962 -195382702 + CT-rich Low_complexity Low_complexity 2 92 0 822 280 164 19 chr1 86811089 86811679 -195381985 - L2 LINE L2 -17 3296 2608 2433 48 7 0 chr1 86813103 86813393 -195380271 + AluY SINE Alu 18 309 -2 368 180 172 31 chr1 86813558 86813686 -195379978 - MER69 DNA AcHobo 0 2526 2381 209 355 71 24 chr1 86815266 86815435 -195378229 + L3 LINE CR1 1312 1488 -89 3845 180 77 16 chr1 86815687 86816628 -195377036 - L1MB8 LINE L1 0 6178 5188 * 5637 141 8 15 chr1 86816627 86817974 -195375690 - L1MA2 LINE L1 -167 6137 4800 688 66 0 28 chr1 86817968 86818074 -195375590 - L1M1 LINE L1 -4788 2777 2675 * 1229 195 51 45 chr1 86818086 86818378 -195375286 - L1M1 LINE L1 -7255 310 17 1081 243 33 13 chr1 86818382 86818683 -195374981 - L1MB8 LINE L1 -940 5206 4900 218 250 14 56 chr1 86818683 86818755 -195374909 + L2 LINE L2 2691 2759 -555 468 261 52 0 chr1 86819022 86819175 -195374489 - L1MD2 LINE L1 -1 6358 6198 4429 138 9 12 chr1 86819206 86819948 -195373716 - L1PA16 LINE L1 -4 6162 5423 265 369 142 6 chr1 86820299 86820475 -195373189 + MIR SINE MIR 57 256 -6 4367 198 24 16 chr1 86820567 86822112 -195371552 + L1MB8 LINE L1 4627 6178 0 358 281 106 12 chr1 86822983 86823143 -195370521 + MIR SINE MIR 88 262 0 787 316 43 15 chr1 86824893 86825422 -195368242 + L1ME LINE L1 3806 4349 -1797 3676 177 16 7 chr1 86825444 86826061 -195367603 + L1M2 LINE L1 3 625 -6224 2111 141 0 19 chr1 86826061 86826438 -195367226 + L1MA4A LINE L1 5932 6301 -2 227 301 0 0 chr1 86826716 86826789 -195366875 + L1ME LINE L1 4631 4703 -1443 1970 104 3 71 chr1 86826902 86827228 -195366436 + AluSq SINE Alu 3 306 -7 656 276 6 18 chr1 86827250 86827420 -195366244 - MIR SINE MIR -94 168 1 978 280 75 27 chr1 86827424 86828447 -195365217 + L1ME LINE L1 4747 5814 -348 42 48 0 0 chr1 86828482 86828545 -195365119 + AT_rich Low_complexity Low_complexity 1 63 0 269 233 0 33 chr1 86829017 86829077 -195364587 - L2 LINE L2 -20 3252 3195 336 292 77 26 chr1 86829452 86829685 -195363979 + MLT1J LTR MaLR 248 492 -19 1763 115 0 33 chr1 86830093 86830363 -195363301 - AluSg SINE Alu -11 299 39 212 250 42 0 chr1 86831831 86831879 -195361785 - L2 LINE L2 -16 3256 3207 204 270 61 88 chr1 86831983 86832016 -195361648 + MIR SINE MIR 118 150 -112 2295 94 0 7 chr1 86832016 86832315 -195361349 + AluSp SINE Alu 2 298 -15 204 270 61 88 chr1 86832315 86832429 -195361235 + MIR SINE MIR 150 261 -1 25 0 0 0 chr1 86832441 86832466 -195361198 + AT_rich Low_complexity Low_complexity 1 25 0 1378 306 115 17 chr1 86833141 86833742 -195359922 + L2 LINE L2 2160 2819 -495 189 0 0 0 chr1 86833873 86833894 -195359770 + (TA)n Simple_repeat Simple_repeat 1 21 0 407 341 14 7 chr1 86833911 86834049 -195359615 + L2 LINE L2 3134 3272 0 324 365 124 30 chr1 86836797 86837191 -195356473 + L2 LINE L2 2837 3267 -5 18860 120 14 18 chr1 86837484 86841311 -195352353 - L1PA8A LINE L1 -7 6124 2310 2242 123 35 14 chr1 86841337 86841704 -195351960 + THE1C LTR MaLR 1 375 0 336 224 13 0 chr1 86842714 86842790 -195350874 - MIR SINE MIR 0 262 186 320 312 0 11 chr1 86843012 86843105 -195350559 - MIR SINE MIR -81 127 36 318 273 68 0 chr1 86843177 86843265 -195350399 - L2 LINE L2 -25 3288 3195 2234 114 0 0 chr1 86843631 86843928 -195349736 + AluSx SINE Alu 1 297 -15 428 300 29 29 chr1 86847114 86847254 -195346410 + MIR SINE MIR 21 160 -102 465 269 9 123 chr1 86847259 86847575 -195346089 - MLT1K LTR MaLR -7 581 302 560 279 138 28 chr1 86848015 86848252 -195345412 - MIR SINE MIR -1 261 5 593 286 46 34 chr1 86849530 86849768 -195343896 + MIR SINE MIR 3 243 -19 319 296 23 0 chr1 86852156 86852244 -195341420 - L1MC4 LINE L1 -1339 6703 6614 192 342 32 32 chr1 86853380 86853535 -195340129 - L2 LINE L2 -9 3304 3150 1600 338 48 4 chr1 86854774 86855318 -195338346 - MLT2F LTR ERVL -95 568 1 478 303 79 64 chr1 86855318 86855855 -195337809 + L1ME LINE L1 1104 1632 -4975 2076 102 3 54 chr1 86855855 86856170 -195337494 - AluSx SINE Alu -13 299 1 478 303 79 64 chr1 86856170 86856438 -195337226 + L1ME LINE L1 1632 1895 -4712 461 208 32 96 chr1 86856438 86856563 -195337101 + FLAM_A SINE Alu 1 117 -16 478 303 79 64 chr1 86856563 86856657 -195337007 + L1ME LINE L1 1895 1986 -4621 186 103 0 0 chr1 86856657 86856686 -195336978 + (TA)n Simple_repeat Simple_repeat 1 29 0 478 303 79 64 chr1 86856686 86857044 -195336620 + L1ME LINE L1 1986 2469 -4138 303 284 97 13 chr1 86857131 86857286 -195336378 + L1ME LINE L1 2576 2743 -3683 308 83 21 0 chr1 86857454 86857502 -195336162 + (TG)n Simple_repeat Simple_repeat 2 50 0 333 285 7 15 chr1 86857943 86858080 -195335584 + (TA)n Simple_repeat Simple_repeat 1 136 0 348 307 137 24 chr1 86858105 86858310 -195335354 + L1MC/D LINE L1 871 1098 -5021 604 158 20 72 chr1 86858377 86858529 -195335135 - MER3 DNA MER1_type -18 191 48 393 306 58 24 chr1 86858543 86858837 -195334827 + HAL1 LINE L1 1474 1777 -730 1789 126 8 8 chr1 86858915 86859170 -195334494 - AluSx SINE Alu -53 259 5 21 0 0 0 chr1 86859738 86859759 -195333905 + AT_rich Low_complexity Low_complexity 1 21 0 308 291 77 10 chr1 86860628 86860824 -195332840 + L1MC/D LINE L1 4389 4597 -1532 272 268 115 31 chr1 86861324 86861500 -195332164 + L1MC/D LINE L1 5483 5671 -474 228 208 21 0 chr1 86861634 86861682 -195331982 + (TA)n Simple_repeat Simple_repeat 1 49 0 11366 185 92 21 chr1 86861856 86863154 -195330510 + L1MA6 LINE L1 2734 3939 -2571 2545 151 43 7 chr1 86863154 86863592 -195330072 - MSTB2 LTR MaLR 0 457 4 11366 185 92 21 chr1 86863592 86865135 -195328529 + L1MA6 LINE L1 3939 5767 -743 1705 161 59 6 chr1 86865162 86865503 -195328161 + L1MA6 LINE L1 6217 6575 -5 246 271 17 0 chr1 86866299 86866358 -195327306 - L2 LINE L2 -8 3305 3246 371 299 216 19 chr1 86866605 86866873 -195326791 - L2 LINE L2 -431 2883 2563 319 231 11 33 chr1 86866929 86866958 -195326706 + MIR SINE MIR 174 202 -60 2001 172 3 21 chr1 86866958 86867331 -195326333 + MER47A DNA MER2_type 1 366 0 319 231 11 33 chr1 86867331 86867392 -195326272 + MIR SINE MIR 202 262 0 1617 217 177 14 chr1 86867960 86868394 -195325270 + MLT1D LTR MaLR 1 505 0 1757 145 112 0 chr1 86869545 86869848 -195323816 + MER1B DNA MER1_type 1 337 0 4125 182 24 10 chr1 86869890 86870693 -195322971 + L1MB7 LINE L1 5371 6184 0 2254 82 3 7 chr1 86872533 86872826 -195320838 + AluSc SINE Alu 1 292 -17 1545 204 84 39 chr1 86873488 86873928 -195319736 + MLT1C LTR MaLR 8 467 0 343 347 46 59 chr1 86873935 86874174 -195319490 - L2 LINE L2 -34 3238 3003 365 204 56 56 chr1 86875138 86875199 -195318465 + MIR SINE MIR 79 142 -120 1659 176 34 96 chr1 86875199 86875615 -195318049 + MLT1B LTR MaLR 1 390 0 365 204 56 56 chr1 86875615 86875661 -195318003 + MIR SINE MIR 141 186 -76 238 315 11 11 chr1 86875666 86875755 -195317909 + MLT1L LTR MaLR 1 89 -526 427 239 30 60 chr1 86875800 86876001 -195317663 + MLT1L LTR MaLR 201 395 -220 257 141 62 31 chr1 86876083 86876147 -195317517 + MLT1J LTR MaLR 398 463 -48 192 77 0 0 chr1 86876494 86876520 -195317144 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 259 307 98 28 chr1 86877948 86878163 -195315501 - L1MC/D LINE L1 -1942 5866 5637 426 227 229 32 chr1 86878664 86878927 -195314737 - L1MC/D LINE L1 -531 5590 5265 202 289 0 0 chr1 86879118 86879170 -195314494 + MIR SINE MIR 56 107 -155 229 357 103 45 chr1 86881190 86881501 -195312163 + L2 LINE L2 2365 2693 -621 21 71 0 0 chr1 86881948 86881990 -195311674 + AT_rich Low_complexity Low_complexity 1 42 0 312 239 113 0 chr1 86882029 86882100 -195311564 + Tigger5 DNA MER2_type 1 79 -2244 292 122 0 0 chr1 86882154 86882203 -195311461 + L1PA16 LINE L1 6092 6140 -26 430 282 0 8 chr1 86882279 86882410 -195311254 + MER94 DNA DNA 1 130 -4 248 256 37 37 chr1 86882496 86882578 -195311086 + L2 LINE L2 2918 2999 -273 737 283 41 16 chr1 86882954 86883198 -195310466 + MIR SINE MIR 2 251 -11 6762 248 39 36 chr1 86883204 86885301 -195308363 + L1M3d LINE L1 1 1789 -4181 198 118 0 0 chr1 86885301 86885335 -195308329 + (CA)n Simple_repeat Simple_repeat 1 34 0 6762 248 39 36 chr1 86885335 86887405 -195306259 + L1M3d LINE L1 1789 3850 -2120 12510 116 12 45 chr1 86887405 86889861 -195303803 + L1P3 LINE L1 1 2462 -3999 8143 37 1 0 chr1 86889857 86890874 -195302790 - L1P LINE L1 -2581 3565 2548 * 4913 98 7 38 chr1 86890874 86891643 -195302021 + L1P3 LINE L1 2466 3210 -3251 189 0 0 0 chr1 86891760 86891781 -195301883 + (T)n Simple_repeat Simple_repeat 1 21 0 7058 30 2 1 chr1 86892155 86892993 -195300671 - L1PA4 LINE L1 -2 6153 5315 248 300 0 11 chr1 86892992 86893082 -195300582 + L1MEc LINE L1 732 820 -5576 * 2239 106 3 0 chr1 86893355 86893647 -195300017 - AluSc SINE Alu -16 293 1 1053 161 24 47 chr1 86944285 86944496 -195249168 + THE1B LTR MaLR 159 364 0 185 232 158 0 chr1 86944514 86944596 -195249068 - L2 LINE L2 -689 2625 2531 6192 179 4 16 chr1 86944875 86946922 -195246742 - L1PA13 LINE L1 -3 6160 4130 389 275 16 123 chr1 86946963 86947214 -195246450 - LTR67 LTR ERVL -2 555 332 2049 171 40 3 chr1 86947812 86948186 -195245478 + MLT1B LTR MaLR 1 388 -2 308 306 62 42 chr1 86948240 86948433 -195245231 - MER117 DNA MER1_type 0 197 1 315 115 179 0 chr1 86948558 86948629 -195245035 - L1MC/D LINE L1 -318 5848 5778 1745 154 22 4 chr1 86948657 86948930 -195244734 + AluSx SINE Alu 1 278 -34 239 259 0 0 chr1 86948943 86949001 -195244663 - L1 LINE L1 -1294 4852 4795 311 274 131 18 chr1 86949024 86949375 -195244289 - L1MDa LINE L1 -871 1705 1208 1390 251 31 37 chr1 86949389 86950031 -195243633 - L1MDa LINE L1 -5200 1196 559 249 33 0 0 chr1 86950031 86950061 -195243603 + (T)n Simple_repeat Simple_repeat 1 30 0 4334 121 10 46 chr1 86950088 86950854 -195242810 - L1P LINE L1 -3110 3036 2298 6263 136 4 8 chr1 86950964 86950984 -195242680 - L1P LINE L1 -3752 2394 2375 196 30 61 0 chr1 86950984 86951017 -195242647 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6263 136 4 8 chr1 86951017 86952018 -195241646 - L1P LINE L1 -3771 2375 1377 3964 68 2 0 chr1 86952024 86952542 -195241122 + L1PA8 LINE L1 5653 6171 -1 555 303 0 0 chr1 86952557 86952699 -195240965 - L1MDa LINE L1 -5861 535 394 210 37 0 0 chr1 86952699 86952726 -195240938 + (TC)n Simple_repeat Simple_repeat 2 28 0 616 298 84 0 chr1 86952740 86953002 -195240662 - L1MDa LINE L1 -6074 322 39 23 33 0 0 chr1 86953044 86953074 -195240590 + AT_rich Low_complexity Low_complexity 1 30 0 2914 53 3 0 chr1 86953075 86953431 -195240233 - L1PA7 LINE L1 -17 6137 5781 2135 65 4 0 chr1 86953433 86953709 -195239955 + L1PA7 LINE L1 5515 5791 -363 28 0 0 0 chr1 86954036 86954064 -195239600 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 86954203 86954238 -195239426 + AT_rich Low_complexity Low_complexity 1 35 0 644 264 60 19 chr1 86955255 86955471 -195238193 - MIR SINE MIR -3 259 35 675 36 0 0 chr1 86955997 86956081 -195237583 - L1PA3 LINE L1 -895 5251 5168 7490 32 0 0 chr1 86956081 86957029 -195236635 + L1PA3 LINE L1 5224 6171 0 22 35 0 0 chr1 86957987 86958016 -195235648 + AT_rich Low_complexity Low_complexity 1 29 0 11291 180 31 33 chr1 86958721 86958833 -195234831 + L1M1 LINE L1 17 128 -7437 2206 116 0 7 chr1 86958833 86959134 -195234530 + AluSx SINE Alu 1 299 -13 11291 180 31 33 chr1 86959134 86961179 -195232485 + L1M1 LINE L1 128 2168 -5397 564 111 0 0 chr1 86961179 86961260 -195232404 + AluY SINE Alu 215 295 -16 426 311 86 39 chr1 86961262 86961542 -195232122 + HAL1 LINE L1 902 1194 -1313 1720 131 189 19 chr1 86961647 86962013 -195231651 + MSTA LTR MaLR 1 428 0 915 305 151 35 chr1 86962023 86962422 -195231242 + HAL1 LINE L1 1208 1559 -948 1593 206 112 42 chr1 86962422 86962894 -195230770 + MLT1D LTR MaLR 1 505 0 915 305 151 35 chr1 86962894 86963112 -195230552 + HAL1 LINE L1 1559 1750 -757 2025 87 55 6 chr1 86963112 86963423 -195230241 + L1PA10 LINE L1 5841 6166 -2 915 305 151 35 chr1 86963423 86963823 -195229841 + HAL1 LINE L1 1750 2344 -163 560 294 43 38 chr1 86964060 86964295 -195229369 + L2 LINE L2 3077 3312 -1 21 0 0 0 chr1 86965752 86965773 -195227891 + AT_rich Low_complexity Low_complexity 1 21 0 330 83 60 30 chr1 86966018 86966151 -195227513 + (TA)n Simple_repeat Simple_repeat 2 138 0 21 0 0 0 chr1 86966174 86966195 -195227469 + AT_rich Low_complexity Low_complexity 1 21 0 290 89 50 30 chr1 86966195 86966296 -195227368 + (TTATA)n Simple_repeat Simple_repeat 4 106 0 400 133 66 0 chr1 86966303 86966469 -195227195 + (TA)n Simple_repeat Simple_repeat 2 178 0 14289 91 6 8 chr1 86966484 86969309 -195224355 - L1PA7 LINE L1 -12 6142 3324 2552 78 22 11 chr1 86970865 86971224 -195222440 - THE1B LTR MaLR 0 364 2 40 49 0 0 chr1 86971696 86971757 -195221907 + AT_rich Low_complexity Low_complexity 1 61 0 21 82 0 0 chr1 86971994 86972043 -195221621 + AT_rich Low_complexity Low_complexity 1 49 0 2343 239 48 4 chr1 86973459 86973995 -195219669 + MLT1F1 LTR MaLR 2 561 -6 200 210 0 16 chr1 86974543 86974605 -195219059 + GA-rich Low_complexity Low_complexity 3 63 0 428 297 80 0 chr1 86974645 86974783 -195218881 + MIR SINE MIR 42 190 -72 2076 177 48 0 chr1 86974967 86975339 -195218325 + MLT1B LTR MaLR 1 390 0 2230 148 60 2 chr1 86976551 86976964 -195216700 + LTR23 LTR ERV1 1 437 0 384 322 137 18 chr1 86977253 86977480 -195216184 - MLT1J LTR MaLR -149 362 109 291 246 142 8 chr1 86978008 86978142 -195215522 - L1ME4a LINE L1 -1 6120 5969 1958 127 74 6 chr1 86978717 86979055 -195214609 - THE1B LTR MaLR 0 364 4 847 153 0 15 chr1 86979144 86979281 -195214383 - AluSc SINE Alu -31 278 144 361 204 18 5 chr1 86979281 86979372 -195214292 - AluJ/monomer SINE Alu -247 53 1 21174 179 11 12 chr1 86979474 86984797 -195208867 - L1PA12 LINE L1 -2 7604 1501 1090 204 4 21 chr1 86984795 86985030 -195208634 - L1PA12 LINE L1 -7350 231 1 * 302 274 75 61 chr1 86985062 86985274 -195208390 - HAL1 LINE L1 -1059 1448 1234 182 36 0 36 chr1 86985274 86985302 -195208362 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 325 328 17 9 chr1 86985321 86985437 -195208227 - L1MEd LINE L1 -4981 1138 1022 291 201 133 0 chr1 86987312 86987392 -195206272 - MIR SINE MIR -68 140 63 1905 111 3 54 chr1 86987658 86987982 -195205682 + AluSg SINE Alu 1 309 0 485 295 51 62 chr1 86989532 86989902 -195203762 + L1MCc LINE L1 24 389 -6034 610 335 8 27 chr1 86990771 86991031 -195202633 + MIR SINE MIR 8 262 0 2645 201 36 85 chr1 86991064 86991792 -195201872 + LTR8A LTR ERV1 34 725 -2 2707 127 19 7 chr1 86991933 86992356 -195201308 + MER34C LTR ERV1 30 457 -128 6715 127 43 45 chr1 86992356 86992491 -195201173 + Tigger3b DNA MER2_type 1 135 -2893 5013 123 22 7 chr1 86992491 86993258 -195200406 + MER4E LTR ERV1 1 779 0 6715 127 43 45 chr1 86993258 86993728 -195199936 + Tigger3b DNA MER2_type 135 605 -2423 2086 138 3 0 chr1 86993728 86994017 -195199647 + AluSq SINE Alu 1 290 -23 6715 127 43 45 chr1 86994017 86994382 -195199282 + Tigger3b DNA MER2_type 605 971 -2057 2157 120 3 3 chr1 86994382 86994691 -195198973 - AluSx SINE Alu -3 309 1 6715 127 43 45 chr1 86994691 86994951 -195198713 + Tigger3b DNA MER2_type 971 1230 -1 699 151 32 0 chr1 86994952 86995078 -195198586 + MER34B LTR ERV1 436 565 0 2050 86 0 4 chr1 86995632 86995900 -195197764 + AluSg SINE Alu 1 267 -43 497 125 0 0 chr1 86995900 86995972 -195197692 - AluY SINE Alu -132 179 108 671 128 0 0 chr1 86996130 86996239 -195197425 + AluSg/x SINE Alu 203 311 -1 1003 128 6 6 chr1 86996243 86996407 -195197257 - Tigger3(Golem) DNA MER2_type -249 2780 2617 21 71 0 0 chr1 86996446 86996488 -195197176 + AT_rich Low_complexity Low_complexity 1 42 0 401 322 102 0 chr1 86996627 86996745 -195196919 - L2 LINE L2 -4 3268 3139 839 216 121 11 chr1 86996746 86997052 -195196612 - MER93b LTR ERV1 0 373 1 1159 179 50 54 chr1 86999090 86999330 -195194334 + AluJo SINE Alu 6 244 -68 23 0 0 0 chr1 86999342 86999365 -195194299 + AT_rich Low_complexity Low_complexity 1 23 0 3209 167 154 85 chr1 87000635 87001703 -195191961 + MER52C LTR ERV1 1 1278 0 21 0 0 0 chr1 87002136 87002157 -195191507 + AT_rich Low_complexity Low_complexity 1 21 0 1075 324 57 24 chr1 87004719 87005326 -195188338 + L2 LINE L2 2591 3216 -97 186 371 86 9 chr1 87005363 87005479 -195188185 - MIR SINE MIR -68 140 16 2227 134 112 25 chr1 87005939 87006333 -195187331 - MSTA LTR MaLR 0 428 1 517 14 29 0 chr1 87007157 87007227 -195186437 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 414 0 0 0 chr1 87007647 87007693 -195185971 + (TATG)n Simple_repeat Simple_repeat 1 46 0 1154 192 25 0 chr1 87007720 87007923 -195185741 - AluJo SINE Alu -102 210 3 1182 161 33 0 chr1 87008207 87008418 -195185246 + L1MB5 LINE L1 5957 6174 0 447 75 45 0 chr1 87008958 87009025 -195184639 + L1PA11 LINE L1 6104 6173 -1 25 0 0 0 chr1 87009285 87009310 -195184354 + AT_rich Low_complexity Low_complexity 1 25 0 322 321 133 48 chr1 87009486 87010227 -195183437 + L2 LINE L2 2444 3249 -64 191 338 70 21 chr1 87010384 87010526 -195183138 + L2 LINE L2 3149 3297 -16 6575 78 1 0 chr1 87010546 87011960 -195181704 - L1PA7 LINE L1 0 6154 4732 26415 115 14 91 chr1 87012061 87013578 -195180086 - L1PA7 LINE L1 -1431 4715 3082 695 43 0 0 chr1 87013578 87013670 -195179994 + AluSg/x SINE Alu 218 309 0 26415 115 14 91 chr1 87013670 87017161 -195176503 - L1PA7 LINE L1 -3064 3082 12 195 322 26 43 chr1 87017242 87017357 -195176307 + L2 LINE L2 2313 2425 -889 457 404 34 5 chr1 87017395 87017666 -195175998 + L2 LINE L2 2724 3001 -312 1357 144 104 16 chr1 87017681 87017931 -195175733 - MSTA LTR MaLR 0 428 157 9630 108 7 1 chr1 87017958 87019286 -195174378 + THE1A-int LTR MaLR 244 1578 -2 2459 96 8 11 chr1 87019288 87019643 -195174021 + THE1A LTR MaLR 1 354 -1 804 163 149 0 chr1 87019644 87019785 -195173879 - MSTA LTR MaLR -266 162 1 680 248 145 41 chr1 87019870 87020269 -195173395 - L2 LINE L2 -194 3119 2698 489 250 119 45 chr1 87020441 87020685 -195172979 + L2 LINE L2 3051 3312 -1 23 33 0 0 chr1 87021541 87021571 -195172093 + AT_rich Low_complexity Low_complexity 1 30 0 387 327 147 0 chr1 87021927 87022083 -195171581 - MER5A DNA MER1_type 0 189 11 190 256 89 11 chr1 87022541 87022631 -195171033 - L2 LINE L2 -673 2641 2545 672 318 113 62 chr1 87022675 87023553 -195170111 - L1M4 LINE L1 -1191 4955 4033 2133 109 3 3 chr1 87023677 87023971 -195169693 - AluSx SINE Alu -16 296 3 202 256 0 26 chr1 87024659 87024737 -195168927 + T-rich Low_complexity Low_complexity 5 80 0 677 285 94 26 chr1 87025559 87025942 -195167722 + MLT1I LTR MaLR 1 409 0 350 259 175 37 chr1 87026038 87026227 -195167437 + MIR SINE MIR 1 215 -47 1053 160 5 0 chr1 87026773 87027020 -195166644 - L1PA12 LINE L1 -19 6142 5851 407 237 110 98 chr1 87028505 87028597 -195165067 + MIR SINE MIR 72 169 -93 2169 97 4 0 chr1 87028597 87028906 -195164758 + AluSp SINE Alu 6 315 0 407 237 110 98 chr1 87028906 87028985 -195164679 + MIR SINE MIR 169 246 -16 218 192 19 0 chr1 87029092 87029144 -195164520 + CT-rich Low_complexity Low_complexity 4 56 0 26 30 0 0 chr1 87030006 87030039 -195163625 + AT_rich Low_complexity Low_complexity 1 33 0 1103 140 12 6 chr1 87030047 87030218 -195163446 + AluJo SINE Alu 112 283 -29 333 47 0 0 chr1 87030220 87030263 -195163401 + (CA)n Simple_repeat Simple_repeat 2 44 0 296 234 138 0 chr1 87030313 87030407 -195163257 - MIR SINE MIR -57 205 99 214 288 99 27 chr1 87030962 87031073 -195162591 + MIR SINE MIR 37 155 -107 27 29 0 0 chr1 87032240 87032274 -195161390 + AT_rich Low_complexity Low_complexity 1 34 0 723 219 125 54 chr1 87032399 87032623 -195161041 + MIR SINE MIR 23 262 0 276 309 108 7 chr1 87032612 87032751 -195160913 - MIR SINE MIR -101 161 9 * 220 357 162 13 chr1 87033035 87033189 -195160475 - MIR SINE MIR -76 186 10 370 302 51 51 chr1 87033510 87033725 -195159939 - L2 LINE L2 -205 3067 2853 196 319 92 35 chr1 87033747 87033888 -195159776 - L2 LINE L2 0 3313 3165 342 265 97 50 chr1 87034168 87034624 -195159040 + L1M4 LINE L1 2786 3262 -2884 24 0 0 0 chr1 87034749 87034773 -195158891 + AT_rich Low_complexity Low_complexity 1 24 0 220 209 58 147 chr1 87035768 87035959 -195157705 + L3b LINE CR1 1123 1296 -287 23 33 0 0 chr1 87035967 87035997 -195157667 + AT_rich Low_complexity Low_complexity 1 30 0 231 315 27 0 chr1 87036399 87036472 -195157192 - MIR SINE MIR -96 166 92 239 344 43 31 chr1 87036568 87036731 -195156933 + MLT1K LTR MaLR 134 298 -290 2130 94 9 67 chr1 87036731 87037091 -195156573 - AluSx SINE Alu 0 341 1 2801 237 65 13 chr1 87037433 87038252 -195155412 - L1MD2 LINE L1 -227 6132 5272 183 42 0 0 chr1 87038258 87038282 -195155382 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1950 128 7 7 chr1 87038283 87038564 -195155100 - AluSq SINE Alu -32 281 1 2383 102 13 0 chr1 87038586 87038901 -195154763 - THE1B LTR MaLR -45 319 1 297 373 8 8 chr1 87039800 87039926 -195153738 + MER5A DNA MER1_type 59 184 -5 1502 282 26 12 chr1 87040153 87040575 -195153089 + LTR16A LTR ERVL 18 445 -5 281 75 0 0 chr1 87041470 87041510 -195152154 - L1MA2 LINE L1 0 6304 6265 5526 56 6 1 chr1 87041815 87042510 -195151154 + L1PA7 LINE L1 5454 6151 -3 2569 258 65 27 chr1 87042695 87044074 -195149590 - L1ME3 LINE L1 -1 6161 4590 286 271 12 0 chr1 87044095 87044180 -195149484 - L1ME3 LINE L1 -1621 4525 4440 796 142 0 7 chr1 87044392 87044533 -195149131 - MLT2C1 LTR ERVL -254 143 4 570 281 75 20 chr1 87044536 87044735 -195148929 + MLT1C LTR MaLR 258 467 0 198 354 57 23 chr1 87044776 87044951 -195148713 - L2 LINE L2 -1257 2057 1877 2065 116 7 0 chr1 87045906 87046191 -195147473 + AluSg SINE Alu 24 310 0 402 21 0 0 chr1 87046191 87046238 -195147426 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 716 226 16 26 chr1 87046532 87046722 -195146942 - MER53 DNA DNA -1 188 1 2960 106 2 14 chr1 87046896 87047341 -195146323 + L1PA14 LINE L1 5719 6158 -3 180 77 0 0 chr1 87047341 87047367 -195146297 + (TG)n Simple_repeat Simple_repeat 1 26 0 643 305 128 0 chr1 87047737 87047963 -195145701 - MIR SINE MIR -5 257 3 271 158 53 35 chr1 87048048 87048105 -195145559 + L2 LINE L2 3250 3307 -6 275 295 133 19 chr1 87048212 87048317 -195145347 + L2 LINE L2 3151 3267 -5 1360 139 16 71 chr1 87049065 87049374 -195144290 + L1 LINE L1 4106 4397 -1749 6326 126 58 24 chr1 87050099 87050755 -195142909 + Tigger3b DNA MER2_type 1 716 -2312 2317 86 3 0 chr1 87050755 87051047 -195142617 + AluSc SINE Alu 1 293 -16 6326 126 58 24 chr1 87051047 87051581 -195142083 + Tigger3b DNA MER2_type 716 1231 0 304 298 48 0 chr1 87051664 87051748 -195141916 - L2 LINE L2 -10 3303 3216 271 286 11 55 chr1 87052184 87052275 -195141389 - L2 LINE L2 -40 3232 3146 21 0 0 0 chr1 87052543 87052564 -195141100 + AT_rich Low_complexity Low_complexity 1 21 0 417 330 85 10 chr1 87053057 87053257 -195140407 - MIR SINE MIR -14 248 34 978 208 67 122 chr1 87053913 87054390 -195139274 - MLT1F1 LTR MaLR 0 567 117 4145 76 2 4 chr1 87054391 87054946 -195138718 - L1PA6 LINE L1 0 6154 5601 21 0 0 0 chr1 87055209 87055230 -195138434 + AT_rich Low_complexity Low_complexity 1 21 0 484 310 176 11 chr1 87055307 87055568 -195138096 + L2 LINE L2 3004 3307 -6 231 275 22 11 chr1 87055575 87055666 -195137998 - L1ME4a LINE L1 -68 6053 5962 2184 191 115 0 chr1 87055906 87056357 -195137307 - MLT1D LTR MaLR 0 505 3 2062 138 0 0 chr1 87057129 87057420 -195136244 - AluSx SINE Alu -21 291 1 804 326 119 28 chr1 87057708 87058522 -195135142 + L2 LINE L2 2373 3272 0 258 32 0 0 chr1 87058780 87058811 -195134853 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr1 87059095 87059118 -195134546 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 546 289 103 80 chr1 87059119 87059631 -195134033 + L1M4 LINE L1 3969 4510 -1636 2288 92 3 3 chr1 87059631 87059923 -195133741 - AluSx SINE Alu -20 292 1 546 289 103 80 chr1 87059923 87060252 -195133412 + L1M4 LINE L1 4510 4830 -1316 1949 124 7 4 chr1 87060257 87060532 -195133132 - AluSx SINE Alu -16 296 21 2247 118 73 25 chr1 87060645 87061043 -195132621 + MSTA LTR MaLR 12 428 0 247 98 24 0 chr1 87061165 87061206 -195132458 + MLT1G LTR MaLR 543 584 -6 1729 167 46 0 chr1 87061229 87061553 -195132111 + MER44D DNA MER2_type 1 609 0 569 319 85 19 chr1 87061623 87061893 -195131771 + L2 LINE L2 2961 3248 -65 1882 190 106 35 chr1 87061903 87062111 -195131553 - LTR64 LTR ERVK 0 558 366 2390 127 3 16 chr1 87062111 87062480 -195131184 + THE1B LTR MaLR 1 364 0 8998 100 96 42 chr1 87062480 87063979 -195129685 + THE1B-int LTR MaLR 1 1580 0 2023 136 24 71 chr1 87063979 87064153 -195129511 + THE1B LTR MaLR 1 182 -182 1877 124 48 7 chr1 87064153 87064459 -195129205 - AluSx SINE Alu 0 317 1 2023 136 24 71 chr1 87064459 87064665 -195128999 + THE1B LTR MaLR 182 364 0 1882 190 106 35 chr1 87064665 87064975 -195128689 - LTR64 LTR ERVK -191 367 1 374 0 0 21 chr1 87066028 87066075 -195127589 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 235 258 316 19 chr1 87066435 87066590 -195127074 - MIR SINE MIR 0 262 62 1249 150 0 81 chr1 87067698 87067944 -195125720 - AluJo SINE Alu -3 309 84 380 218 89 20 chr1 87068493 87068594 -195125070 - MIR SINE MIR -119 143 36 2278 117 0 3 chr1 87068709 87069018 -195124646 + AluSx SINE Alu 1 308 -4 336 298 167 0 chr1 87069320 87069434 -195124230 + L2 LINE L2 3140 3272 0 447 311 132 14 chr1 87071490 87071709 -195121955 + MIR SINE MIR 6 250 -12 1722 174 0 25 chr1 87072390 87072671 -195120993 + AluJo SINE Alu 1 274 -38 180 0 0 0 chr1 87072677 87072697 -195120967 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 200 214 0 0 chr1 87072949 87072991 -195120673 + A-rich Low_complexity Low_complexity 4 45 0 236 333 27 0 chr1 87073565 87073640 -195120024 + L2 LINE L2 3188 3264 -8 477 280 113 0 chr1 87075041 87075191 -195118473 + MIR SINE MIR 34 200 -62 233 267 0 0 chr1 87075235 87075280 -195118384 + L2 LINE L2 3210 3254 -18 207 0 0 0 chr1 87075711 87075734 -195117930 + (A)n Simple_repeat Simple_repeat 1 23 0 268 224 0 0 chr1 87076847 87076896 -195116768 - L3 LINE CR1 -5 1572 1524 189 0 0 0 chr1 87077068 87077089 -195116575 + (TTA)n Simple_repeat Simple_repeat 2 22 0 8771 37 0 1 chr1 87077090 87078911 -195114753 - L1PA4 LINE L1 -17 6138 4319 604 198 102 40 chr1 87078983 87079160 -195114504 - MER20 DNA MER1_type -2 217 30 213 180 0 80 chr1 87079615 87079665 -195113999 + L2 LINE L2 3268 3313 0 388 305 162 0 chr1 87079944 87080111 -195113553 - MIR SINE MIR -32 230 37 1017 219 60 4 chr1 87080995 87081260 -195112404 + L1MEc LINE L1 127 406 -5990 2349 194 68 23 chr1 87081453 87082072 -195111592 + L1MEc LINE L1 440 1086 -5310 1104 233 25 9 chr1 87082070 87082410 -195111254 + L1ME1 LINE L1 5779 6284 -50 * 2394 127 8 0 chr1 87082412 87082782 -195110882 - L1PA16 LINE L1 -9 6157 5785 246 119 51 42 chr1 87082882 87083000 -195110664 + (TA)n Simple_repeat Simple_repeat 1 119 0 2300 77 6 0 chr1 87083004 87083327 -195110337 - Tigger4(Zombi) DNA MER2_type -145 2586 2262 625 114 78 9 chr1 87083325 87083464 -195110200 - Tigger4(Zombi) DNA MER2_type -2585 146 3 * 742 123 0 0 chr1 87083627 87083749 -195109915 + L1MA5A LINE L1 6176 6297 0 27 29 0 0 chr1 87083749 87083783 -195109881 + AT_rich Low_complexity Low_complexity 1 34 0 501 276 47 8 chr1 87083794 87083921 -195109743 - MIR SINE MIR -110 152 21 26 0 0 0 chr1 87085178 87085204 -195108460 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr1 87087390 87087425 -195106239 + (TG)n Simple_repeat Simple_repeat 2 36 0 720 249 96 16 chr1 87087521 87087834 -195105830 - L1ME4a LINE L1 -294 5827 5490 184 304 71 0 chr1 87087870 87087926 -195105738 - L3 LINE CR1 -8 1569 1510 2302 104 3 0 chr1 87088077 87088384 -195105280 + AluSx SINE Alu 1 308 -4 1453 207 4 4 chr1 87089212 87089473 -195104191 + AluJo SINE Alu 43 303 -9 595 253 33 22 chr1 87089611 87089793 -195103871 - MIR SINE MIR 0 262 79 365 306 83 44 chr1 87090421 87090601 -195103063 + MIR SINE MIR 6 192 -70 237 33 0 0 chr1 87091066 87091096 -195102568 + (A)n Simple_repeat Simple_repeat 1 30 0 1505 175 75 7 chr1 87091291 87091571 -195102093 + AluJb SINE Alu 1 299 -13 653 302 87 63 chr1 87091792 87092296 -195101368 + L2 LINE L2 2259 2774 -540 236 176 0 143 chr1 87092922 87092963 -195100701 + L1MEc LINE L1 1974 1997 -4399 2140 114 10 3 chr1 87092963 87093253 -195100411 - AluSp SINE Alu -21 292 1 236 176 0 143 chr1 87093253 87093302 -195100362 + L1MEc LINE L1 1997 2051 -4345 420 234 305 9 chr1 87094891 87095063 -195098601 - MIR SINE MIR 0 262 43 222 279 25 13 chr1 87095108 87095187 -195098477 - L2 LINE L2 -2 3311 3232 761 257 143 50 chr1 87095196 87095573 -195098091 - L2 LINE L2 -4 3268 2857 1071 222 105 41 chr1 87095700 87096043 -195097621 + MLT1A1 LTR MaLR 1 365 0 276 340 47 33 chr1 87096062 87096212 -195097452 - L2 LINE L2 0 3272 3121 28 29 0 0 chr1 87096843 87096878 -195096786 + AT_rich Low_complexity Low_complexity 1 35 0 1761 203 3 10 chr1 87096976 87097282 -195096382 - AluJo SINE Alu -8 304 1 307 310 16 47 chr1 87097319 87097448 -195096216 + MIR3 SINE MIR 71 195 -13 305 309 64 0 chr1 87099038 87099148 -195094516 - MIR SINE MIR -38 224 108 231 228 0 18 chr1 87099246 87099303 -195094361 + A-rich Low_complexity Low_complexity 4 59 0 270 254 40 49 chr1 87099526 87099635 -195094029 + MIR SINE MIR 8 112 -118 2367 53 0 0 chr1 87099779 87100091 -195093573 - AluY SINE Alu 0 312 1 425 354 43 19 chr1 87100212 87100421 -195093243 + HAL1 LINE L1 822 1035 -1472 409 204 162 74 chr1 87100473 87100689 -195092975 + HAL1 LINE L1 2263 2497 -10 22 0 0 0 chr1 87100689 87100711 -195092953 + AT_rich Low_complexity Low_complexity 1 22 0 2024 168 45 20 chr1 87101285 87101796 -195091868 - L1MA4A LINE L1 -34 6269 5684 224 30 30 0 chr1 87103194 87103227 -195090437 + (TTG)n Simple_repeat Simple_repeat 1 34 0 1994 164 0 0 chr1 87104312 87104610 -195089054 + AluJb SINE Alu 1 298 -14 186 256 0 0 chr1 87104701 87104740 -195088924 + L3 LINE CR1 1534 1572 -5 484 281 94 12 chr1 87105652 87105823 -195087841 - LTR16A1 LTR ERVL 0 457 273 403 209 43 61 chr1 87105863 87105978 -195087686 - LTR16A1 LTR ERVL -303 154 42 23 33 0 0 chr1 87106603 87106633 -195087031 + AT_rich Low_complexity Low_complexity 1 30 0 1700 190 66 49 chr1 87106947 87107399 -195086265 + MLT1C LTR MaLR 8 467 0 555 308 64 2 chr1 87107574 87107962 -195085702 - MLT1L LTR MaLR -4 611 142 702 305 76 8 chr1 87108031 87108412 -195085252 - L1ME LINE L1 -532 5632 5227 221 351 153 49 chr1 87108681 87109270 -195084394 + L2 LINE L2 2203 2852 -462 311 152 40 71 chr1 87109291 87109390 -195084274 - Charlie7 DNA MER1_type 0 2612 2517 543 351 147 43 chr1 87109705 87110314 -195083350 + L2 LINE L2 2593 3272 0 236 380 58 7 chr1 87110334 87110471 -195083193 + L2 LINE L2 3127 3270 -2 253 346 29 26 chr1 87110583 87110711 -195082953 - MIR SINE MIR -75 133 2 239 93 23 0 chr1 87110757 87110800 -195082864 + (CA)n Simple_repeat Simple_repeat 2 45 0 5205 136 33 44 chr1 87111171 87112258 -195081406 - L1MA5 LINE L1 -6 7713 6641 * 10988 164 50 11 chr1 87112254 87114204 -195079460 - L1MA5 LINE L1 -1498 6067 4007 2173 101 0 0 chr1 87114204 87114480 -195079184 + AluSx SINE Alu 21 296 -16 10988 164 50 11 chr1 87114480 87114875 -195078789 - L1MA5 LINE L1 -3558 4007 3629 552 269 39 0 chr1 87115024 87115154 -195078510 - MIR SINE MIR -90 172 38 632 241 82 49 chr1 87116129 87116374 -195077290 - L2 LINE L2 0 3313 3061 486 277 9 30 chr1 87116508 87116713 -195076951 - MIR SINE MIR -34 228 30 568 309 113 25 chr1 87117450 87117858 -195075806 - L1ME4a LINE L1 -69 6052 5609 36 0 0 0 chr1 87119135 87119171 -195074493 + AT_rich Low_complexity Low_complexity 1 36 0 1594 206 0 14 chr1 87119176 87119468 -195074196 - AluJo SINE Alu -24 288 1 1984 146 0 0 chr1 87120229 87120524 -195073140 - AluSx SINE Alu -17 295 1 524 314 74 74 chr1 87121040 87121568 -195072096 - LTR67 LTR ERVL -4 553 26 182 243 100 0 chr1 87121776 87121846 -195071818 + MIR SINE MIR 97 173 -89 5892 139 20 42 chr1 87122667 87123762 -195069902 - MER11C LTR ERVK 0 1071 1 1787 139 21 10 chr1 87125340 87125628 -195068036 - AluJb SINE Alu -15 297 7 1771 153 66 0 chr1 87125642 87125930 -195067734 - AluSx SINE Alu -5 307 1 347 333 59 27 chr1 87126491 87126677 -195066987 - MIR SINE MIR -37 225 34 21 36 0 0 chr1 87126993 87127021 -195066643 + AT_rich Low_complexity Low_complexity 1 28 0 200 188 42 0 chr1 87127036 87127084 -195066580 + T-rich Low_complexity Low_complexity 4 53 0 32 75 0 0 chr1 87127780 87127847 -195065817 + AT_rich Low_complexity Low_complexity 1 67 0 694 266 143 20 chr1 87128391 87128952 -195064712 - L1M4 LINE L1 -1352 4794 4165 269 328 41 33 chr1 87129015 87129137 -195064527 - MIR3 SINE MIR -32 176 54 233 387 0 0 chr1 87129637 87129699 -195063965 + MIR SINE MIR 11 72 -190 296 250 65 56 chr1 87130070 87130178 -195063486 + MIR SINE MIR 40 148 -60 5283 109 24 41 chr1 87130413 87131612 -195062052 + L1PA16 LINE L1 4975 6159 -7 241 162 29 15 chr1 87131612 87131680 -195061984 + (TA)n Simple_repeat Simple_repeat 1 69 0 5195 127 24 0 chr1 87132632 87133686 -195059978 - L1PA15 LINE L1 0 6165 5057 351 0 0 0 chr1 87134157 87134196 -195059468 + (CA)n Simple_repeat Simple_repeat 2 40 0 944 120 0 0 chr1 87135294 87135427 -195058237 - AluJb SINE Alu -17 295 163 1118 121 0 0 chr1 87135549 87135698 -195057966 - AluJo SINE Alu -163 149 1 1786 177 0 40 chr1 87137014 87137336 -195056328 - AluJo SINE Alu -3 309 1 530 278 126 16 chr1 87137370 87137561 -195056103 + MIR SINE MIR 2 213 -49 238 132 75 38 chr1 87137593 87137646 -195056018 - MLT2A1 LTR ERVL 0 444 390 243 0 0 0 chr1 87137664 87137691 -195055973 + (TG)n Simple_repeat Simple_repeat 2 28 0 2843 98 23 2 chr1 87137701 87138097 -195055567 - MLT2A1 LTR ERVL -40 404 1 43424 77 11 4 chr1 87138097 87138559 -195055105 - HERVL-A1 LTR ERVL 0 5654 5197 8847 41 4 10 chr1 87138559 87139637 -195054027 - MER11C LTR ERVK 0 1071 1 43424 77 11 4 chr1 87139637 87144790 -195048874 - HERVL-A1 LTR ERVL -457 5197 1 325 161 0 0 chr1 87144790 87144846 -195048818 - MLT2A1 LTR ERVL 0 453 398 207 0 0 0 chr1 87144865 87144888 -195048776 + (TG)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr1 87144890 87144914 -195048750 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 1315 113 0 78 chr1 87144914 87145144 -195048520 + MLT2A2 LTR ERVL 58 269 -184 247 105 0 0 chr1 87145146 87145184 -195048480 - MLT2A2 LTR ERVL -415 38 1 23 33 0 0 chr1 87145900 87145930 -195047734 + AT_rich Low_complexity Low_complexity 1 30 0 238 194 75 0 chr1 87146405 87146472 -195047192 + Charlie7 DNA MER1_type 59 130 -2482 711 70 0 20 chr1 87146473 87146573 -195047091 + MER4A LTR ERV1 1 98 -566 1764 123 8 62 chr1 87146573 87146938 -195046726 + MER4A LTR ERV1 261 664 0 2700 123 28 2 chr1 87147669 87148092 -195045572 - MER57B LTR ERV1 0 434 1 1605 74 126 4 chr1 87148092 87148323 -195045341 - MER57B-int LTR ERV1 0 7537 7279 513 144 85 34 chr1 87148323 87148441 -195045223 - LTR54B LTR ERV1 -367 131 8 12338 92 21 19 chr1 87148441 87149678 -195043986 - MER57B-int LTR ERV1 -388 7149 5907 3427 113 8 8 chr1 87149678 87150189 -195043475 - MER9 LTR ERVK 0 511 1 12338 92 21 19 chr1 87150189 87150721 -195042943 - MER57B-int LTR ERV1 -1630 5907 5377 7820 93 36 7 chr1 87150722 87151955 -195041709 - MER57B-int LTR ERV1 -2354 5183 3914 6052 117 50 21 chr1 87151953 87153097 -195040567 - MER57B-int LTR ERV1 -2787 3159 2167 * 746 118 17 0 chr1 87153093 87153212 -195040452 - MER57B-int LTR ERV1 -3929 2017 1897 * 5479 134 46 8 chr1 87153214 87154091 -195039573 - MER57B-int LTR ERV1 -5187 2350 1441 3469 104 7 60 chr1 87154091 87154482 -195039182 - MER57B-int LTR ERV1 -6790 747 392 2072 96 0 10 chr1 87154482 87154775 -195038889 - AluY SINE Alu -21 290 1 3469 104 7 60 chr1 87154775 87154932 -195038732 - MER57B-int LTR ERV1 -7145 392 228 1948 168 5 29 chr1 87154932 87155318 -195038346 - MER57B LTR ERV1 -57 377 1 180 0 0 0 chr1 87155337 87155357 -195038307 + (A)n Simple_repeat Simple_repeat 1 20 0 2485 67 0 3 chr1 87155961 87156273 -195037391 - AluY SINE Alu 0 311 1 534 273 8 8 chr1 87156775 87156903 -195036761 - L2 LINE L2 -1 3312 3185 604 284 45 126 chr1 87157042 87157528 -195036136 - L2 LINE L2 -377 2937 2491 270 237 203 17 chr1 87158802 87158920 -195034744 + L2 LINE L2 3132 3271 -1 834 126 0 0 chr1 87159401 87159528 -195034136 - L1PA16 LINE L1 0 6166 6040 1590 194 3 7 chr1 87159662 87159966 -195033698 - AluJo SINE Alu -9 303 1 1204 193 88 42 chr1 87160083 87160368 -195033296 - AluJo SINE Alu -14 298 1 237 224 20 0 chr1 87161030 87161079 -195032585 + L2 LINE L2 2713 2762 -552 198 385 114 18 chr1 87161074 87161240 -195032424 - MER5A DNA MER1_type -7 182 1 * 267 319 11 0 chr1 87161511 87161605 -195032059 - MER94 DNA DNA 0 134 40 797 250 102 5 chr1 87162291 87162487 -195031177 + MER58A DNA MER1_type 2 216 -8 329 297 27 0 chr1 87162528 87162639 -195031025 - MIR SINE MIR -1 261 148 525 374 23 11 chr1 87162639 87162813 -195030851 + MER91A DNA MER1_type 1 176 -20 396 313 98 0 chr1 87162971 87163083 -195030581 - MIR SINE MIR -116 146 24 837 274 44 52 chr1 87164359 87164607 -195029057 - MIR SINE MIR -4 258 13 306 191 298 0 chr1 87165237 87165321 -195028343 + L2 LINE L2 3192 3300 -13 194 316 118 7 chr1 87165339 87165475 -195028189 + L2 LINE L2 3158 3308 -5 236 404 12 18 chr1 87166367 87166533 -195027131 + L2 LINE L2 2935 3099 -173 284 314 144 0 chr1 87166869 87166987 -195026677 - L2 LINE L2 -1 3271 3137 2378 127 14 6 chr1 87167122 87167483 -195026181 - THE1B LTR MaLR 0 364 1 10497 101 24 28 chr1 87167483 87169070 -195024594 - THE1B-int LTR MaLR 0 1580 1 2148 136 8 74 chr1 87169070 87169148 -195024516 - THE1B LTR MaLR 0 364 282 2275 92 0 0 chr1 87169148 87169454 -195024210 + AluSx SINE Alu 1 306 0 2148 136 8 74 chr1 87169454 87169763 -195023901 - THE1B LTR MaLR -82 282 1 312 308 58 64 chr1 87170520 87170676 -195022988 + L2 LINE L2 3117 3271 -1 501 221 133 19 chr1 87171452 87171610 -195022054 + MIR SINE MIR 74 249 -13 216 311 76 34 chr1 87171979 87172098 -195021566 + L2 LINE L2 3149 3272 0 21 0 0 0 chr1 87172822 87172843 -195020821 + AT_rich Low_complexity Low_complexity 1 21 0 15524 168 37 15 chr1 87173825 87174766 -195018898 - L1MA4 LINE L1 0 7719 6800 253 23 91 0 chr1 87174766 87174810 -195018854 + T-rich Low_complexity Low_complexity 2 49 0 15524 168 37 15 chr1 87174810 87176949 -195016715 - L1MA4 LINE L1 -919 6800 4709 1659 138 110 11 chr1 87176949 87177231 -195016433 - AluJo SINE Alu 0 312 3 15524 168 37 15 chr1 87177231 87178455 -195015209 - L1MA4 LINE L1 -3010 4709 3327 2239 107 0 7 chr1 87178455 87178764 -195014900 + AluSc SINE Alu 1 307 -2 15524 168 37 15 chr1 87178764 87178924 -195014740 - L1MA4 LINE L1 -4392 3327 3172 21 0 0 0 chr1 87179086 87179107 -195014557 + AT_rich Low_complexity Low_complexity 1 21 0 280 100 0 33 chr1 87180073 87180117 -195013547 + (TCCCC)n Simple_repeat Simple_repeat 4 47 -14 2232 130 11 6 chr1 87180117 87180470 -195013194 + THE1A LTR MaLR 1 355 0 280 100 0 33 chr1 87180470 87180485 -195013179 + (TCCCC)n Simple_repeat Simple_repeat 47 61 0 1264 214 52 8 chr1 87180520 87180652 -195013012 - AluJo SINE Alu -33 279 154 1990 137 0 3 chr1 87180652 87180958 -195012706 - AluSx SINE Alu -7 305 1 1264 214 52 8 chr1 87180958 87181092 -195012572 - AluJo SINE Alu -158 154 1 1226 175 70 11 chr1 87181092 87181377 -195012287 - L1M4 LINE L1 -949 5197 4896 266 172 17 69 chr1 87181377 87181435 -195012229 + Tigger5 DNA MER2_type 1 55 -2268 521 184 0 0 chr1 87181445 87181532 -195012132 + Tigger5 DNA MER2_type 2237 2323 0 1441 209 133 43 chr1 87181532 87182096 -195011568 - L1M4 LINE L1 -1249 4897 4283 448 154 16 122 chr1 87182091 87182214 -195011450 + L1M4 LINE L1 4569 4678 -1468 * 782 278 60 20 chr1 87183318 87183570 -195010094 + MIR SINE MIR 1 262 0 1722 131 75 39 chr1 87184618 87184978 -195008686 + THE1C LTR MaLR 3 375 0 264 304 78 0 chr1 87184983 87185085 -195008579 + MIR SINE MIR 100 209 -53 308 340 154 26 chr1 87185092 87185325 -195008339 - L3 LINE CR1 -459 1118 824 216 0 0 0 chr1 87185325 87185349 -195008315 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 308 340 154 26 chr1 87185349 87185465 -195008199 - L3 LINE CR1 -753 824 724 26 30 0 0 chr1 87185625 87185658 -195008006 + AT_rich Low_complexity Low_complexity 1 33 0 35 41 0 0 chr1 87186341 87186390 -195007274 + AT_rich Low_complexity Low_complexity 1 49 0 901 186 164 0 chr1 87186918 87187101 -195006563 - MSTB LTR MaLR 0 426 214 200 205 0 0 chr1 87187137 87187176 -195006488 + GA-rich Low_complexity Low_complexity 1 39 0 1004 179 103 40 chr1 87187176 87187428 -195006236 - MSTA LTR MaLR -160 268 1 383 188 21 42 chr1 87187659 87187755 -195005909 + L1MEd LINE L1 39 132 -5987 1035 313 81 35 chr1 87188315 87188789 -195004875 + L1MEd LINE L1 237 688 -5431 2401 219 32 67 chr1 87188789 87189465 -195004199 - MLT1E1 LTR MaLR -1 653 1 1035 313 81 35 chr1 87189465 87189569 -195004095 + L1MEd LINE L1 688 786 -5333 2156 115 0 19 chr1 87189569 87189882 -195003782 + AluSx SINE Alu 1 307 -5 1035 313 81 35 chr1 87189882 87189929 -195003735 + L1MEd LINE L1 786 892 -5227 726 304 37 17 chr1 87190049 87190538 -195003126 - MLT1H LTR MaLR -2 547 14 536 199 63 34 chr1 87190550 87190756 -195002908 + L1MEd LINE L1 987 1198 -4921 404 287 25 55 chr1 87190809 87190912 -195002752 + L1M4c LINE L1 1527 1632 -1111 2746 0 0 25 chr1 87190912 87191226 -195002438 - AluYa5 SINE Alu -5 306 1 404 287 25 55 chr1 87191226 87191411 -195002253 + L1M4c LINE L1 1632 1887 -856 182 77 39 58 chr1 87192045 87192097 -195001567 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 22 56 0 0 chr1 87192205 87192241 -195001423 + AT_rich Low_complexity Low_complexity 1 36 0 263 291 66 44 chr1 87192383 87192654 -195001010 + L1M4c LINE L1 2913 3189 -3193 681 253 40 0 chr1 87193309 87193459 -195000205 + MER58A DNA MER1_type 1 156 0 1520 286 133 33 chr1 87193961 87195341 -194998323 + L1ME LINE L1 857 2373 -4023 914 306 85 38 chr1 87195540 87196243 -194997421 + L1ME LINE L1 3672 4407 -1808 496 269 218 5 chr1 87196504 87196701 -194996963 - MIR SINE MIR -21 241 3 242 315 65 60 chr1 87196715 87197118 -194996546 + L1ME LINE L1 4684 5088 -1127 559 263 65 0 chr1 87197471 87197677 -194995987 + L1ME LINE L1 5478 5723 -467 278 79 0 0 chr1 87197683 87197721 -194995943 - MER58B DNA MER1_type -4 337 300 214 26 79 0 chr1 87197721 87197759 -194995905 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 726 200 0 49 chr1 87198376 87198615 -194995049 - MER58B DNA MER1_type -24 317 24 621 248 0 0 chr1 87199910 87200043 -194993621 - FLAM_A SINE Alu 0 133 1 305 282 77 123 chr1 87201458 87201979 -194991685 + HAL1 LINE L1 1076 1572 -935 236 300 0 0 chr1 87202130 87202200 -194991464 + L1MC4 LINE L1 7836 7905 -137 638 163 13 92 chr1 87202470 87202623 -194991041 + Charlie1 DNA MER1_type 1465 1605 -1156 697 205 50 25 chr1 87202623 87202823 -194990841 - L1M4 LINE L1 -831 5315 5111 2213 102 13 0 chr1 87202829 87203134 -194990530 - AluSx SINE Alu -3 309 1 2044 144 56 24 chr1 87203280 87203656 -194990008 - MLT1B LTR MaLR -2 388 1 1182 149 14 14 chr1 87203657 87203872 -194989792 - L1MB3 LINE L1 -21 6162 5948 24 53 0 0 chr1 87204424 87204462 -194989202 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr1 87205438 87205463 -194988201 + AT_rich Low_complexity Low_complexity 1 25 0 1649 167 0 24 chr1 87206939 87207227 -194986437 + AluJb SINE Alu 1 281 -31 316 360 34 34 chr1 87207874 87208166 -194985498 + L1M4 LINE L1 4212 4503 -1643 1005 82 0 0 chr1 87208500 87208634 -194985030 - MLT2A2 LTR ERVL -319 134 1 411 357 80 9 chr1 87208634 87208970 -194984694 + L1M4 LINE L1 4819 5178 -968 1343 168 0 9 chr1 87208979 87209205 -194984459 + AluJo SINE Alu 82 305 -7 502 92 0 133 chr1 87209865 87209985 -194983679 + Tigger4(Zombi) DNA MER2_type 2626 2729 -2 301 275 36 46 chr1 87210583 87210699 -194982965 + MIR SINE MIR 3 113 -95 452 305 46 13 chr1 87210798 87210949 -194982715 - MIR SINE MIR -15 247 92 812 67 0 0 chr1 87211091 87211196 -194982468 - L1PB1 LINE L1 -2 6149 6045 2138 135 21 12 chr1 87211338 87211672 -194981992 + MER1B DNA MER1_type 1 337 0 439 181 0 0 chr1 87211734 87211806 -194981858 + FRAM SINE Alu 59 130 -46 6142 141 16 2 chr1 87211817 87212915 -194980749 + L1MA5A LINE L1 5186 6297 0 333 194 108 8 chr1 87212959 87213088 -194980576 - L1ME4a LINE L1 -268 5853 5712 2372 260 70 22 chr1 87213090 87214189 -194979475 - L2 LINE L2 0 3313 2167 624 271 18 6 chr1 87214194 87214364 -194979300 - L1ME4a LINE L1 -420 5701 5530 461 246 44 77 chr1 87215013 87215196 -194978468 - MIR SINE MIR -6 256 80 2165 134 11 35 chr1 87215205 87215578 -194978086 + THE1B LTR MaLR 1 364 0 429 340 101 0 chr1 87215689 87215877 -194977787 - MIR SINE MIR -54 208 2 199 295 162 0 chr1 87216207 87216312 -194977352 + L2 LINE L2 3096 3217 -55 335 315 65 60 chr1 87216535 87216935 -194976729 + L2 LINE L2 1710 2111 -1203 2389 78 3 0 chr1 87217882 87218178 -194975486 - AluY SINE Alu -14 297 1 225 209 0 0 chr1 87218183 87218226 -194975438 + T-rich Low_complexity Low_complexity 1 43 0 394 231 168 15 chr1 87218858 87219061 -194974603 + L1ME4a LINE L1 5839 6072 -49 237 33 0 0 chr1 87219103 87219133 -194974531 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 243 0 0 0 chr1 87219132 87219159 -194974505 + (CA)n Simple_repeat Simple_repeat 1 27 0 326 306 57 0 chr1 87219745 87219869 -194973795 - MIR SINE MIR -49 213 83 468 301 78 27 chr1 87220478 87220697 -194972967 - MIR SINE MIR -21 241 12 504 265 26 0 chr1 87220824 87220941 -194972723 - L2 LINE L2 -5 3308 3189 381 93 0 0 chr1 87221229 87221283 -194972381 + (TG)n Simple_repeat Simple_repeat 2 55 0 2242 117 0 0 chr1 87223658 87223956 -194969708 - AluSx SINE Alu -14 298 1 25 0 0 0 chr1 87224083 87224108 -194969556 + AT_rich Low_complexity Low_complexity 1 25 0 1222 251 27 21 chr1 87224206 87224540 -194969124 + MER93a LTR ERV1 67 402 0 2405 79 7 0 chr1 87224924 87225227 -194968437 + AluSq SINE Alu 1 305 -8 341 308 45 38 chr1 87225594 87225727 -194967937 + MLT1J LTR MaLR 324 457 -54 1547 148 0 4 chr1 87225741 87225977 -194967687 - AluJb SINE Alu -14 298 64 530 155 0 0 chr1 87226080 87226164 -194967500 - AluJb SINE Alu -228 84 1 469 287 92 31 chr1 87227766 87227961 -194965703 + MIR SINE MIR 6 212 -50 382 61 0 30 chr1 87227970 87228036 -194965628 - L1PA15 LINE L1 0 6165 6102 345 0 0 0 chr1 87228037 87228075 -194965589 - L1PA15 LINE L1 -216 5949 5912 255 93 0 0 chr1 87228498 87228541 -194965123 + (TG)n Simple_repeat Simple_repeat 2 44 0 683 65 0 0 chr1 87228756 87228848 -194964816 - L1PA4 LINE L1 -3 6152 6061 977 24 142 0 chr1 87228848 87228975 -194964689 + L1PA4 LINE L1 5811 5955 -200 1669 181 3 3 chr1 87230489 87230782 -194962882 + AluJb SINE Alu 1 293 -19 2380 144 13 10 chr1 87231080 87231470 -194962194 + Tigger2 DNA MER2_type 2328 2718 0 800 109 0 17 chr1 87232403 87232522 -194961142 + L1PB1 LINE L1 5991 6107 -44 23 33 0 0 chr1 87232523 87232553 -194961111 + AT_rich Low_complexity Low_complexity 1 30 0 729 257 60 9 chr1 87233510 87233728 -194959936 - MIR SINE MIR 0 262 34 393 291 58 41 chr1 87233774 87233946 -194959718 - MIR SINE MIR -57 205 31 220 299 30 15 chr1 87234055 87234122 -194959542 + L2 LINE L2 3168 3235 -37 185 309 60 48 chr1 87234248 87234332 -194959332 - L2 LINE L2 -19 3294 3210 * 230 295 141 0 chr1 87234331 87234409 -194959255 + L2 LINE L2 3184 3272 0 2142 107 0 3 chr1 87235108 87235397 -194958267 + AluSg SINE Alu 21 308 -2 21 71 0 0 chr1 87236500 87236542 -194957122 + AT_rich Low_complexity Low_complexity 1 42 0 477 311 83 31 chr1 87237308 87237365 -194956299 - MIR SINE MIR -12 250 197 1962 106 87 0 chr1 87237365 87237640 -194956024 + AluSg SINE Alu 1 299 -11 477 311 83 31 chr1 87237640 87237810 -194955854 - MIR SINE MIR -65 197 11 312 233 39 94 chr1 87238018 87238198 -194955466 - Charlie7 DNA MER1_type 0 2612 2443 482 309 103 27 chr1 87238268 87238491 -194955173 + MIR SINE MIR 15 254 -8 376 369 69 39 chr1 87238493 87239013 -194954651 + L2 LINE L2 2001 2536 -778 2213 120 0 3 chr1 87239022 87239330 -194954334 + AluSg SINE Alu 1 307 -3 512 321 0 8 chr1 87239397 87239531 -194954133 + MIR SINE MIR 14 146 -116 29 70 0 0 chr1 87239743 87239800 -194953864 + AT_rich Low_complexity Low_complexity 1 57 0 294 134 90 15 chr1 87240165 87240232 -194953432 - L1MC1 LINE L1 0 6333 6262 3815 94 27 30 chr1 87240359 87240904 -194952760 + L1M1 LINE L1 2795 3339 -4226 2404 85 0 0 chr1 87240904 87241198 -194952466 + AluSc SINE Alu 1 294 -15 3815 94 27 30 chr1 87241198 87241278 -194952386 + L1M1 LINE L1 3339 3418 -4147 1097 176 26 0 chr1 87241278 87241471 -194952193 + MLT1A1 LTR MaLR 120 317 -48 1049 285 100 50 chr1 87242727 87243482 -194950182 + L1MEc LINE L1 1259 2082 -4314 1010 164 144 0 chr1 87243482 87243677 -194949987 - MER58A DNA MER1_type -1 223 1 1049 285 100 50 chr1 87243677 87243957 -194949707 + L1MEc LINE L1 2082 2346 -4050 1050 273 71 27 chr1 87244092 87244638 -194949026 + L1MEc LINE L1 2322 2900 -3315 341 57 0 19 chr1 87244638 87244691 -194948973 + (TAAA)n Simple_repeat Simple_repeat 4 55 0 1050 273 71 27 chr1 87244691 87244766 -194948898 + L1MEc LINE L1 2900 2970 -3245 29 0 0 0 chr1 87244776 87244805 -194948859 + AT_rich Low_complexity Low_complexity 1 29 0 334 265 87 32 chr1 87244871 87245180 -194948484 + L1MEc LINE L1 3150 3475 -2740 970 179 0 6 chr1 87245184 87245340 -194948324 + AluJb SINE Alu 140 294 -18 3940 251 76 49 chr1 87245343 87247140 -194946524 + L1MEc LINE L1 3471 5316 -899 417 239 6 132 chr1 87247644 87247726 -194945938 + MER5A DNA MER1_type 4 58 -131 638 186 34 0 chr1 87247726 87247844 -194945820 + FLAM_A SINE Alu 1 122 -11 417 239 6 132 chr1 87247844 87247920 -194945744 + MER5A DNA MER1_type 58 142 -47 801 215 100 6 chr1 87248165 87248467 -194945197 + MSTD LTR MaLR 1 396 0 2019 105 27 3 chr1 87248764 87249058 -194944606 - AluSg SINE Alu -9 301 1 1801 171 3 16 chr1 87249972 87250276 -194943388 - AluJo SINE Alu -12 300 1 226 343 0 0 chr1 87250429 87250496 -194943168 - L3 LINE CR1 -1 1576 1510 422 299 47 8 chr1 87251560 87251687 -194941977 - L2 LINE L2 -5 3267 3136 1871 102 0 105 chr1 87252076 87252400 -194941264 + AluSg SINE Alu 1 290 -20 344 290 40 24 chr1 87252824 87252948 -194940716 - MER117 DNA MER1_type -71 126 1 330 26 0 0 chr1 87253026 87253065 -194940599 + (CA)n Simple_repeat Simple_repeat 2 40 0 231 271 0 0 chr1 87253585 87253633 -194940031 + (CA)n Simple_repeat Simple_repeat 2 49 0 2158 131 0 13 chr1 87254089 87254402 -194939262 + AluSx SINE Alu 1 309 -3 455 312 43 7 chr1 87254625 87254763 -194938901 + MIR3 SINE MIR 3 145 -63 1360 199 32 78 chr1 87255386 87255848 -194937816 - L1M4 LINE L1 -1796 4350 3910 1434 234 65 34 chr1 87255868 87255893 -194937771 - L1M4 LINE L1 -3375 2771 2748 2098 105 10 14 chr1 87255893 87256189 -194937475 - AluSx SINE Alu -17 295 1 1434 234 65 34 chr1 87256189 87256621 -194937043 - L1M4 LINE L1 -3398 2748 2293 2111 127 3 10 chr1 87256621 87256912 -194936752 - AluSx SINE Alu -23 289 1 1434 234 65 34 chr1 87256912 87256979 -194936685 - L1M4 LINE L1 -3853 2293 2230 2279 122 27 14 chr1 87257055 87257423 -194936241 + THE1C LTR MaLR 3 375 0 958 301 52 34 chr1 87257984 87258479 -194935185 + LTR33 LTR ERVL 11 514 -7 2222 141 91 10 chr1 87258911 87259307 -194934357 + MSTA LTR MaLR 1 428 0 265 292 21 52 chr1 87259479 87259575 -194934089 - MER5A DNA MER1_type -42 147 55 251 314 0 39 chr1 87259491 87259593 -194934071 + MER5A DNA MER1_type 66 163 -26 * 190 380 16 8 chr1 87259638 87259759 -194933905 - L2 LINE L2 -568 2746 2625 1112 252 96 58 chr1 87259894 87260426 -194933238 + MLT1F1 LTR MaLR 1 552 -15 21 0 0 0 chr1 87260634 87260655 -194933009 + AT_rich Low_complexity Low_complexity 1 21 0 397 234 32 57 chr1 87261506 87261664 -194932000 + Charlie7 DNA MER1_type 13 166 -2446 257 181 207 21 chr1 87261813 87262006 -194931658 + Charlie7 DNA MER1_type 2259 2487 -125 259 301 12 12 chr1 87262385 87262468 -194931196 + L2 LINE L2 3230 3312 -1 1560 86 35 27 chr1 87262611 87262867 -194930797 + L1MA5A LINE L1 6036 6293 -4 552 302 44 52 chr1 87263085 87263337 -194930327 + MIR SINE MIR 12 261 -1 338 251 205 46 chr1 87263747 87264020 -194929644 - Charlie8 DNA MER1_type -1021 1396 3 348 261 75 35 chr1 87264026 87264160 -194929504 + MIR SINE MIR 19 155 -65 2164 129 7 0 chr1 87264741 87265043 -194928621 - AluSx SINE Alu -8 304 1 186 278 111 22 chr1 87265192 87265282 -194928382 + MIR SINE MIR 159 256 -6 460 333 42 0 chr1 87265784 87265973 -194927691 - MIR SINE MIR 0 262 66 261 283 97 44 chr1 87266387 87266695 -194926969 + L1P4 LINE L1 4382 4672 -1494 2460 77 0 6 chr1 87266695 87267007 -194926657 + AluY SINE Alu 1 310 -1 261 283 97 44 chr1 87267007 87267693 -194925971 + L1P4 LINE L1 4672 5431 -735 1707 106 15 29 chr1 87268127 87268401 -194925263 - L1PA10 LINE L1 -4 6164 5895 1490 164 0 0 chr1 87268401 87268621 -194925043 - AluJb SINE Alu -19 293 74 698 72 21 0 chr1 87268922 87269019 -194924645 - AluY SINE Alu -8 303 205 348 274 125 12 chr1 87269185 87269353 -194924311 + MLT1J LTR MaLR 1 187 -324 1184 215 33 4 chr1 87269381 87269655 -194924009 + L1MA1 LINE L1 17 298 -7267 * 6672 193 17 31 chr1 87269648 87271293 -194922371 + L1MA1 LINE L1 3943 5564 -2001 * 6696 116 24 22 chr1 87271289 87272676 -194920988 + L1MA1 LINE L1 5807 7191 -530 2288 113 3 0 chr1 87272676 87272985 -194920679 + AluSp SINE Alu 1 310 -3 6696 116 24 22 chr1 87272985 87273517 -194920147 + L1MA1 LINE L1 7191 7721 0 2295 185 34 4 chr1 87273642 87274150 -194919514 + Charlie1b DNA MER1_type 1 523 0 392 158 26 0 chr1 87274889 87274965 -194918699 + L1PB4 LINE L1 6075 6152 -4 498 184 4 23 chr1 87275182 87275427 -194918237 + AluJo SINE Alu 1 298 -14 321 271 72 10 chr1 87275932 87276079 -194917585 + MLT1J2 LTR MaLR 48 202 -244 1029 241 104 3 chr1 87276497 87276804 -194916860 + MER21B LTR ERV1 466 803 -60 497 248 55 40 chr1 87278012 87278286 -194915378 + L1MC/D LINE L1 5257 5534 -2274 216 283 0 0 chr1 87278327 87278380 -194915284 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1657 137 0 100 chr1 87278538 87278859 -194914805 - AluJb SINE Alu -23 289 1 24 53 0 0 chr1 87278905 87278943 -194914721 + AT_rich Low_complexity Low_complexity 1 38 0 1111 180 4 4 chr1 87280371 87280599 -194913065 + L1 LINE L1 4782 5009 -1137 1594 139 45 4 chr1 87282345 87282589 -194911075 - AluJo SINE Alu -13 299 46 21 0 0 0 chr1 87282860 87282881 -194910783 + AT_rich Low_complexity Low_complexity 1 21 0 536 148 79 0 chr1 87282957 87283058 -194910606 - FLAM_A SINE Alu -10 132 24 891 243 67 5 chr1 87283719 87283929 -194909735 - MER58A DNA MER1_type -1 223 1 309 283 0 0 chr1 87283994 87284054 -194909610 - MER91B DNA MER1_type -127 63 4 555 292 82 0 chr1 87285180 87285375 -194908289 + L2 LINE L2 2458 2668 -646 835 342 43 9 chr1 87285377 87285722 -194907942 + L2 LINE L2 2955 3311 -2 385 299 126 60 chr1 87285823 87286157 -194907507 - L2 LINE L2 -521 2793 2438 625 322 62 72 chr1 87286190 87286609 -194907055 + L2 LINE L2 2843 3257 -15 1274 45 0 0 chr1 87287490 87287645 -194906019 - AluYa5 SINE Alu -3 308 154 2826 119 12 2 chr1 87289358 87289788 -194903876 + MER57B LTR ERV1 1 434 0 198 0 0 0 chr1 87290499 87290521 -194903143 + (TTTAA)n Simple_repeat Simple_repeat 4 25 0 2093 145 0 0 chr1 87290527 87290816 -194902848 - AluSx SINE Alu -23 289 1 635 204 33 20 chr1 87291109 87291261 -194902403 + MIR SINE MIR 103 256 -6 218 352 47 99 chr1 87291278 87291511 -194902153 + L2 LINE L2 3037 3257 -15 376 311 61 14 chr1 87292198 87292346 -194901318 - MIR SINE MIR -88 174 20 382 308 40 72 chr1 87295111 87295361 -194898303 + L1M2 LINE L1 552 793 -6056 277 206 30 121 chr1 87297547 87297712 -194895952 - L2 LINE L2 -51 3262 3113 2549 58 0 0 chr1 87297840 87298149 -194895515 + AluY SINE Alu 1 309 -2 1636 267 139 31 chr1 87298566 87299375 -194894289 - L2 LINE L2 0 3313 2407 24 0 0 0 chr1 87300019 87300043 -194893621 + AT_rich Low_complexity Low_complexity 1 24 0 538 59 0 82 chr1 87300646 87300731 -194892933 + MADE1 DNA Mariner 1 78 -2 21 71 0 0 chr1 87301005 87301047 -194892617 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr1 87301450 87301492 -194892172 + AT_rich Low_complexity Low_complexity 1 42 0 2266 116 42 94 chr1 87302189 87302637 -194891027 - MER61B LTR ERV1 0 425 1 342 239 0 0 chr1 87302980 87303047 -194890617 - L2 LINE L2 -5 3267 3201 415 310 80 11 chr1 87303121 87303308 -194890356 + MIR SINE MIR 8 207 -55 286 274 78 10 chr1 87303471 87303573 -194890091 + L2 LINE L2 2949 3057 -215 351 243 84 9 chr1 87306139 87306246 -194887418 - L2 LINE L2 0 3313 3199 513 310 19 7 chr1 87306353 87306508 -194887156 + MIR3 SINE MIR 51 207 -1 2469 57 3 0 chr1 87307165 87307466 -194886198 + AluY SINE Alu 2 303 -8 590 283 64 11 chr1 87308609 87308796 -194884868 + MIR SINE MIR 59 255 -7 24 0 0 0 chr1 87309653 87309677 -194883987 + AT_rich Low_complexity Low_complexity 1 24 0 2795 259 52 38 chr1 87310075 87310820 -194882844 + L2 LINE L2 2043 2801 -512 225 0 0 0 chr1 87310820 87310845 -194882819 + (CA)n Simple_repeat Simple_repeat 2 26 0 2795 259 52 38 chr1 87310845 87311236 -194882428 + L2 LINE L2 2801 3185 -128 813 167 0 0 chr1 87311274 87311394 -194882270 + FLAM_C SINE Alu 1 120 -23 848 231 92 25 chr1 87311793 87312031 -194881633 + MIR SINE MIR 9 262 0 211 245 20 0 chr1 87312865 87312914 -194880750 + L2 LINE L2 3264 3313 0 245 343 108 0 chr1 87313634 87313736 -194879928 - L2 LINE L2 -11 3261 3149 1090 169 95 92 chr1 87313952 87314277 -194879387 - L2 LINE L2 -507 2807 2482 500 326 48 121 chr1 87314292 87314543 -194879121 - L2 LINE L2 -2176 1138 870 1605 169 11 4 chr1 87314543 87314809 -194878855 + AluJb SINE Alu 7 274 -38 500 326 48 121 chr1 87314809 87315501 -194878163 - L2 LINE L2 -2444 870 264 226 262 57 50 chr1 87318090 87318231 -194875433 + L2 LINE L2 2265 2406 -908 1391 145 28 0 chr1 87319102 87319351 -194874313 - L1MA4 LINE L1 -3 6297 6042 5156 105 6 10 chr1 87319466 87320246 -194873418 - MER11C LTR ERVK -294 777 1 9419 79 18 0 chr1 87320247 87321462 -194872202 - HERVL LTR ERVL -445 5209 3973 555 256 91 75 chr1 87321706 87322014 -194871650 + HAL1 LINE L1 9 321 -2186 268 363 39 10 chr1 87322044 87322146 -194871518 + HAL1 LINE L1 588 692 -1815 * 1074 284 101 29 chr1 87322135 87322747 -194870917 + HAL1 LINE L1 1524 2179 -328 411 83 0 0 chr1 87322950 87323010 -194870654 + (CA)n Simple_repeat Simple_repeat 1 60 0 2496 53 0 7 chr1 87323080 87323379 -194870285 + AluY SINE Alu 1 297 -14 515 228 21 95 chr1 87324001 87324190 -194869474 - MER20B DNA MER1_type -605 178 4 22 0 0 0 chr1 87324812 87324834 -194868830 + AT_rich Low_complexity Low_complexity 1 22 0 558 293 0 13 chr1 87325242 87325392 -194868272 - MIR SINE MIR -112 150 3 35 54 0 0 chr1 87326360 87326416 -194867248 + AT_rich Low_complexity Low_complexity 1 56 0 1662 244 107 18 chr1 87327491 87327987 -194865677 + MLT1H LTR MaLR 1 540 -9 300 111 0 0 chr1 87328093 87328147 -194865517 + (T)n Simple_repeat Simple_repeat 1 54 0 235 140 0 0 chr1 87328148 87328198 -194865466 - L1PA2 LINE L1 -1 6154 6105 * 1527 23 2 3 chr1 87328182 87328389 -194865275 + L1PA2 LINE L1 5691 5895 -259 359 284 187 22 chr1 87328829 87329107 -194864557 + L1ME4a LINE L1 4082 4405 -1741 22 0 0 0 chr1 87329179 87329201 -194864463 + AT_rich Low_complexity Low_complexity 1 22 0 405 293 89 39 chr1 87329210 87329490 -194864174 + L1ME4a LINE L1 4765 5058 -1088 1715 159 13 33 chr1 87329556 87329857 -194863807 - AluJb SINE Alu -17 295 1 286 284 39 39 chr1 87330162 87330289 -194863375 + L1ME4a LINE L1 5558 5684 -437 23 54 0 0 chr1 87330364 87330401 -194863263 + AT_rich Low_complexity Low_complexity 1 37 0 237 294 56 32 chr1 87330490 87330616 -194863048 + L1ME4a LINE L1 5976 6104 -17 2625 194 53 55 chr1 87331647 87332302 -194861362 + MLT1E1 LTR MaLR 1 654 0 2250 99 0 0 chr1 87332943 87333236 -194860428 + AluSc SINE Alu 1 293 -16 1604 210 67 15 chr1 87333550 87333959 -194859705 + MLT1D LTR MaLR 103 505 0 859 249 67 34 chr1 87334217 87334486 -194859178 - L1MC4 LINE L1 -485 7557 7280 2139 254 82 55 chr1 87334650 87335859 -194857805 + L1MEc LINE L1 202 1442 -5121 2376 188 102 34 chr1 87335876 87336701 -194856963 - LTR28 LTR ERV1 0 1020 1 248 292 68 12 chr1 87336701 87336862 -194856802 + L1MEc LINE L1 1319 1488 -4896 871 238 67 0 chr1 87336882 87337092 -194856572 + MER58A DNA MER1_type 1 224 0 261 224 41 41 chr1 87337093 87337191 -194856473 + L1MEc LINE L1 1653 1750 -4813 16650 54 1 0 chr1 87338082 87340221 -194853443 - L1PA5 LINE L1 -2768 3378 1239 16363 35 4 2 chr1 87340221 87342989 -194850675 + L1PA5 LINE L1 3383 6154 0 216 0 0 0 chr1 87343602 87343626 -194850038 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2280 85 0 7 chr1 87343631 87343925 -194849739 - AluSp SINE Alu -21 292 1 206 352 0 11 chr1 87343991 87344082 -194849582 + MIR SINE MIR 160 249 -13 293 291 116 0 chr1 87344252 87344338 -194849326 + L2 LINE L2 3214 3309 -4 6218 154 18 8 chr1 87344445 87345548 -194848116 + L1MC1 LINE L1 5219 6333 0 245 321 0 0 chr1 87346118 87346199 -194847465 + L3b LINE CR1 1322 1402 -181 781 263 31 35 chr1 87346518 87346673 -194846991 + MIR SINE MIR 5 160 -102 1928 226 10 5 chr1 87346673 87347067 -194846597 + MSTD LTR MaLR 1 396 0 781 263 31 35 chr1 87347067 87347166 -194846498 + MIR SINE MIR 160 258 -4 1757 138 85 25 chr1 87347166 87347520 -194846144 - THE1C LTR MaLR 0 375 1 33 0 0 0 chr1 87348287 87348320 -194845344 + AT_rich Low_complexity Low_complexity 1 33 0 188 375 89 9 chr1 87348496 87348608 -194845056 - L2 LINE L2 -15 3257 3137 442 273 16 16 chr1 87348725 87348846 -194844818 + MIR SINE MIR 124 244 -18 286 263 115 67 chr1 87348894 87349103 -194844561 - L2 LINE L2 -215 3057 2839 703 155 9 0 chr1 87349196 87349312 -194844352 + FLAM_A SINE Alu 10 126 -16 602 360 48 4 chr1 87349405 87349655 -194844009 - MIR SINE MIR 0 262 2 714 201 13 0 chr1 87349685 87349834 -194843830 + FRAM SINE Alu 5 155 -21 2750 193 6 16 chr1 87350129 87350674 -194842990 - MER34 LTR ERV1 -3 539 1 3020 170 65 67 chr1 87350741 87351558 -194842106 - MER34-int LTR ERV1 -157 6174 4057 794 179 0 0 chr1 87351562 87351685 -194841979 + FLAM_A SINE Alu 2 124 -9 24 77 0 0 chr1 87351688 87351740 -194841924 + AT_rich Low_complexity Low_complexity 1 52 0 2309 106 3 0 chr1 87351740 87352052 -194841612 + AluSp SINE Alu 1 313 0 4310 190 85 70 chr1 87352054 87353345 -194840319 - MER31-int LTR ERV1 -868 4068 2968 1829 183 57 19 chr1 87353346 87353718 -194839946 - MSTB LTR MaLR 0 426 41 400 93 27 27 chr1 87353718 87353793 -194839871 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1214 204 0 22 chr1 87353796 87354027 -194839637 - AluSg/x SINE Alu -2 310 85 340 148 0 0 chr1 87354028 87354082 -194839582 - MSTB LTR MaLR -372 54 1 1552 209 11 3 chr1 87354187 87354469 -194839195 - AluJo SINE Alu -28 284 1 540 201 156 0 chr1 87354491 87354645 -194839019 - MER31-int LTR ERV1 -2340 2596 2419 1829 220 88 57 chr1 87354777 87356258 -194837406 - MER31-int LTR ERV1 -2686 2250 833 209 383 53 21 chr1 87356544 87356732 -194836932 - L2 LINE L2 -810 2504 2311 2385 79 3 22 chr1 87356885 87357200 -194836464 + AluSx SINE Alu 1 309 -3 693 327 64 50 chr1 87357647 87358149 -194835515 + L1M1 LINE L1 1216 1724 -5772 186 43 0 0 chr1 87358452 87358475 -194835189 + (A)n Simple_repeat Simple_repeat 1 23 0 14131 205 30 28 chr1 87358496 87360611 -194833053 + L1M1 LINE L1 2054 4163 -3556 187 51 0 51 chr1 87360611 87360650 -194833014 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 14131 205 30 28 chr1 87360650 87363641 -194830023 + L1M1 LINE L1 4163 7103 -616 11433 173 38 11 chr1 87363639 87366408 -194827256 + L1M1 LINE L1 9 3534 -4031 * 2600 120 93 13 chr1 87366414 87366588 -194827076 + L1MA3 LINE L1 5614 5773 -532 1467 111 13 43 chr1 87366588 87366823 -194826841 - MER30 DNA MER1_type 0 230 3 2600 120 93 13 chr1 87366823 87367099 -194826565 + L1MA3 LINE L1 5773 6100 -205 883 68 0 30 chr1 87367102 87367234 -194826430 - L1PA12 LINE L1 -10 6158 6031 289 278 230 30 chr1 87370667 87370897 -194822767 - L2 LINE L2 -25 3288 3013 395 255 171 11 chr1 87371551 87371814 -194821850 - L1ME4a LINE L1 -96 6025 5721 2518 56 0 7 chr1 87374872 87375177 -194818487 + AluY SINE Alu 1 303 -8 351 255 208 0 chr1 87376128 87376277 -194817387 + MER5A DNA MER1_type 10 189 0 1156 236 86 30 chr1 87376533 87376997 -194816667 + MLT1G3 LTR MaLR 1 553 -14 1012 269 21 25 chr1 87377884 87378170 -194815494 + ERVL LTR ERVL 4865 5149 -615 321 231 55 0 chr1 87378309 87378400 -194815264 + ERVL LTR ERVL 5337 5432 -332 539 261 36 141 chr1 87378709 87379406 -194814258 + LTR41 LTR ERVL 5 628 -145 802 267 25 15 chr1 87379407 87379609 -194814055 - ERVL LTR ERVL -687 5077 4874 390 193 123 0 chr1 87379612 87379737 -194813927 + LTR41 LTR ERVL 634 795 0 3128 97 19 7 chr1 87379911 87380376 -194813288 + L1PA14 LINE L1 5689 6159 -2 189 0 0 0 chr1 87380491 87380512 -194813152 + (T)n Simple_repeat Simple_repeat 1 21 0 566 216 31 49 chr1 87381818 87381980 -194811684 + MER112 DNA MER1_type 1 159 -101 357 213 16 74 chr1 87382013 87382038 -194811626 + MER112 DNA MER1_type 1 26 -234 2300 91 3 3 chr1 87382038 87382335 -194811329 + AluSc SINE Alu 1 297 -12 357 213 16 74 chr1 87382335 87382431 -194811233 + MER112 DNA MER1_type 26 115 -145 468 303 120 13 chr1 87382804 87383038 -194810626 - MLT1K LTR MaLR -2 586 328 331 301 164 27 chr1 87383079 87383262 -194810402 - MLT1K LTR MaLR -356 232 25 21 40 0 40 chr1 87384670 87384704 -194808960 + AT_rich Low_complexity Low_complexity 1 34 -14 1465 177 4 16 chr1 87384704 87384953 -194808711 - AluJo SINE Alu -30 282 37 21 40 0 40 chr1 87384953 87384968 -194808696 + AT_rich Low_complexity Low_complexity 34 48 0 273 57 0 0 chr1 87385297 87385332 -194808332 + (CA)n Simple_repeat Simple_repeat 2 36 0 2309 91 40 40 chr1 87386085 87386460 -194807204 + THE1C LTR MaLR 1 375 0 519 289 308 8 chr1 87386772 87387142 -194806522 + L3 LINE CR1 360 840 -737 1608 167 88 26 chr1 87387199 87387541 -194806123 + MLT1A1 LTR MaLR 1 363 -2 369 277 115 0 chr1 87387609 87387739 -194805925 - L1MEd LINE L1 -5279 840 696 577 293 62 19 chr1 87387896 87388413 -194805251 + L1ME2 LINE L1 1243 1887 -856 545 284 98 24 chr1 87388924 87389633 -194804031 + L1ME2 LINE L1 2369 3138 -3244 * 1200 180 10 42 chr1 87389604 87389893 -194803771 + L1MC4a LINE L1 7235 7514 -530 228 238 0 0 chr1 87389894 87389936 -194803728 - MLT2C1 LTR ERVL -2 395 354 300 227 0 0 chr1 87389953 87390041 -194803623 + (TA)n Simple_repeat Simple_repeat 1 88 0 296 253 74 0 chr1 87390052 87390147 -194803517 + L1ME3 LINE L1 1810 1911 -4629 2103 230 47 61 chr1 87390147 87390629 -194803035 + L1ME3 LINE L1 2585 3072 -3468 2640 36 0 10 chr1 87390629 87390938 -194802726 - AluY SINE Alu -5 306 1 2103 230 47 61 chr1 87390938 87391455 -194802209 + L1ME3 LINE L1 3072 3570 -2970 1120 303 71 7 chr1 87391461 87392039 -194801625 + L1ME3 LINE L1 3626 4240 -2300 918 236 14 19 chr1 87392089 87392305 -194801359 + MLT1A2 LTR MaLR 160 374 0 1151 263 60 40 chr1 87392305 87392514 -194801150 + L1ME3 LINE L1 6065 6268 -288 2363 101 0 3 chr1 87392514 87392822 -194800842 + AluSq SINE Alu 1 307 -6 1151 263 60 40 chr1 87392822 87393092 -194800572 + L1ME3 LINE L1 6268 6554 -2 974 287 86 22 chr1 87393115 87394240 -194799424 + L1ME2 LINE L1 4899 6094 -306 842 292 9 0 chr1 87394563 87394782 -194798882 + MIR SINE MIR 10 230 -32 222 259 17 0 chr1 87394821 87394879 -194798785 + MIR SINE MIR 93 151 -111 506 196 56 0 chr1 87396068 87396175 -194797489 - L2 LINE L2 -11 3302 3190 295 162 81 0 chr1 87396478 87396552 -194797112 - MER81 DNA DNA 0 114 35 189 0 0 0 chr1 87399159 87399180 -194794484 + (TG)n Simple_repeat Simple_repeat 2 22 0 222 321 0 25 chr1 87399414 87399495 -194794169 - MIR3 SINE MIR -21 187 109 503 299 51 26 chr1 87400033 87400267 -194793397 - MARNA DNA Mariner -346 240 1 505 268 256 30 chr1 87400909 87401442 -194792222 + L2 LINE L2 2642 3304 -9 293 356 50 0 chr1 87403541 87403642 -194790022 - MER5B DNA MER1_type -37 141 36 2878 230 77 16 chr1 87403642 87403724 -194789940 + L1MC4a LINE L1 6904 6980 -828 204 97 0 0 chr1 87403724 87403755 -194789909 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 2878 230 77 16 chr1 87403755 87404525 -194789139 + L1MC4a LINE L1 6980 7808 0 232 156 67 0 chr1 87404588 87404633 -194789031 - MER5B DNA MER1_type -130 48 1 191 290 90 10 chr1 87404655 87404755 -194788909 - MIR SINE MIR -46 216 109 443 240 164 49 chr1 87404836 87404898 -194788766 - MIR SINE MIR -41 221 167 2465 127 35 24 chr1 87404898 87405324 -194788340 - MSTB1 LTR MaLR -1 431 1 443 240 164 49 chr1 87405324 87405444 -194788220 - MIR SINE MIR -95 167 18 1491 216 42 58 chr1 87405787 87406320 -194787344 + MER39 LTR ERV1 1 707 0 263 233 0 17 chr1 87406454 87406514 -194787150 + L2 LINE L2 3214 3272 0 275 364 74 37 chr1 87407712 87407929 -194785735 - L2 LINE L2 -6 3266 3042 628 282 68 21 chr1 87407969 87408203 -194785461 + MIR SINE MIR 16 260 -2 203 328 123 17 chr1 87408359 87408594 -194785070 - L2 LINE L2 -461 2853 2594 189 310 21 70 chr1 87409862 87410004 -194783660 - MIR SINE MIR -42 220 86 198 274 32 0 chr1 87410007 87410069 -194783595 - MIR SINE MIR -138 124 61 334 269 8 90 chr1 87410129 87410263 -194783401 - L2 LINE L2 -3 3310 3188 2058 133 10 0 chr1 87410657 87410958 -194782706 - AluSx SINE Alu -8 304 1 33 43 0 0 chr1 87411001 87411048 -194782616 + AT_rich Low_complexity Low_complexity 1 47 0 326 217 26 52 chr1 87411070 87411185 -194782479 - MIR SINE MIR -27 235 124 729 278 4 43 chr1 87411955 87412189 -194781475 - MIR SINE MIR -22 240 16 262 318 61 24 chr1 87414640 87414810 -194778854 + MIR SINE MIR 34 210 -52 703 170 0 9 chr1 87417341 87417453 -194776211 - FLAM_A SINE Alu -21 121 11 397 286 0 0 chr1 87417611 87417716 -194775948 - MIR SINE MIR -110 152 48 234 250 111 14 chr1 87418017 87418089 -194775575 + MER112 DNA MER1_type 1 79 -181 596 150 45 22 chr1 87418090 87418212 -194775452 - L1MB7 LINE L1 -41 6139 6019 470 169 11 164 chr1 87418230 87418419 -194775245 + MER112 DNA MER1_type 85 244 -16 337 255 31 10 chr1 87418512 87418610 -194775054 + L2 LINE L2 3214 3313 0 393 290 42 65 chr1 87419607 87419824 -194773840 - MIR SINE MIR -21 241 30 301 336 30 0 chr1 87420636 87420770 -194772894 + MIR SINE MIR 12 149 -113 205 321 167 0 chr1 87421143 87421227 -194772437 - L2 LINE L2 -32 3281 3184 679 279 18 35 chr1 87421357 87421583 -194772081 - MIR SINE MIR -10 252 31 413 101 130 0 chr1 87422151 87422220 -194771444 - MADE1 DNA Mariner 0 80 3 354 338 141 0 chr1 87422361 87422574 -194771090 - L2 LINE L2 -1244 2070 1828 183 156 0 0 chr1 87423967 87423999 -194769665 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 674 304 62 19 chr1 87425632 87426001 -194767663 + L2 LINE L2 2396 2780 -534 183 100 0 0 chr1 87426006 87426036 -194767628 + (TTTTTA)n Simple_repeat Simple_repeat 6 35 0 2225 128 25 8 chr1 87426038 87426397 -194767267 - L1PA16 LINE L1 -9 6157 5793 566 318 117 12 chr1 87426539 87426882 -194766782 + L2 LINE L2 2935 3313 0 267 247 11 34 chr1 87426867 87426956 -194766708 + MIR SINE MIR 175 261 -1 * 3242 188 69 50 chr1 87427155 87427949 -194765715 - L1MB7 LINE L1 -9 6175 5367 325 286 64 58 chr1 87428339 87428391 -194765273 - MIR3 SINE MIR -3 205 155 897 225 11 0 chr1 87428391 87428578 -194765086 + MER5A DNA MER1_type 1 189 0 325 286 64 58 chr1 87428578 87428696 -194764968 - MIR3 SINE MIR -53 155 34 1698 224 39 35 chr1 87429081 87429545 -194764119 + MLT1C LTR MaLR 1 466 -1 276 281 148 29 chr1 87429753 87429963 -194763701 + L2 LINE L2 2825 3059 -254 376 292 0 29 chr1 87430007 87430144 -194763520 - MIR SINE MIR -17 245 113 207 208 62 0 chr1 87430278 87430326 -194763338 + L2 LINE L2 3259 3309 -4 324 269 160 8 chr1 87430866 87430985 -194762679 + MIR3 SINE MIR 8 144 -64 220 306 82 55 chr1 87431080 87431299 -194762365 + L2 LINE L2 2481 2705 -609 242 274 55 0 chr1 87431463 87431536 -194762128 + MIR SINE MIR 122 198 -64 197 368 100 32 chr1 87431588 87431838 -194761826 + L2 LINE L2 3004 3270 -2 241 236 85 58 chr1 87433174 87433312 -194760352 - MIR SINE MIR -58 150 52 241 336 57 36 chr1 87434081 87434328 -194759336 + MLT1J1 LTR MaLR 172 423 -23 186 229 21 0 chr1 87434407 87434455 -194759209 + L2 LINE L2 2680 2728 -586 588 247 68 0 chr1 87434742 87434888 -194758776 + MIR SINE MIR 42 197 -65 249 292 0 14 chr1 87435015 87435087 -194758577 + L2 LINE L2 3201 3271 -1 299 287 114 23 chr1 87435783 87436090 -194757574 + L2 LINE L2 2286 2620 -694 184 245 0 38 chr1 87436164 87436217 -194757447 + MIR SINE MIR 200 250 -12 432 0 0 0 chr1 87436757 87436805 -194756859 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 184 372 0 31 chr1 87436822 87436951 -194756713 - L2 LINE L2 -30 3283 3159 383 235 0 0 chr1 87437470 87437555 -194756109 - MIR SINE MIR -77 131 47 1797 135 56 0 chr1 87438065 87438332 -194755332 - AluSx SINE Alu -16 296 15 381 286 56 0 chr1 87439210 87439336 -194754328 - L2 LINE L2 0 3272 3140 22 35 0 0 chr1 87439868 87439897 -194753767 + AT_rich Low_complexity Low_complexity 1 29 0 2004 155 34 26 chr1 87440322 87440709 -194752955 - MLT1B LTR MaLR 0 390 1 1063 259 34 24 chr1 87442458 87442786 -194750878 + MLT1G3 LTR MaLR 1 331 -199 1779 177 0 0 chr1 87442896 87443178 -194750486 + AluJb SINE Alu 1 282 -30 470 236 139 10 chr1 87444786 87444994 -194748670 - MIR SINE MIR 0 262 28 443 263 107 45 chr1 87445026 87445250 -194748414 + MIR SINE MIR 13 250 -12 359 268 39 83 chr1 87445961 87446215 -194747449 + MER102b DNA MER1_type 98 340 -1 234 314 69 20 chr1 87446956 87447058 -194746606 + MIR SINE MIR 22 128 -80 313 136 0 0 chr1 87447164 87447223 -194746441 + L1MA4A LINE L1 6244 6302 -1 644 149 0 53 chr1 87447250 87447438 -194746226 + (GGA)n Simple_repeat Simple_repeat 2 179 0 238 187 15 52 chr1 87447447 87447581 -194746083 + GA-rich Low_complexity Low_complexity 3 131 0 477 226 68 117 chr1 87447766 87448032 -194745632 + L2 LINE L2 2912 3164 -108 275 43 21 21 chr1 87448060 87448107 -194745557 - L1MA4A LINE L1 -6 6297 6251 1663 194 160 23 chr1 87448117 87448509 -194745155 + MLT2B1 LTR ERVL 29 487 -33 372 59 0 0 chr1 87448509 87448560 -194745104 + (TG)n Simple_repeat Simple_repeat 2 52 0 1663 194 160 23 chr1 87448560 87448599 -194745065 + MLT2B1 LTR ERVL 487 519 -1 265 286 0 0 chr1 87448607 87448663 -194745001 + L2 LINE L2 3207 3262 -10 303 316 78 93 chr1 87450509 87450854 -194742810 + L2 LINE L2 2933 3272 0 818 286 13 21 chr1 87451497 87451735 -194741929 + MIR SINE MIR 2 237 -25 25 51 0 0 chr1 87451883 87451922 -194741742 + AT_rich Low_complexity Low_complexity 1 39 0 24 96 0 0 chr1 87451945 87452018 -194741646 + AT_rich Low_complexity Low_complexity 1 73 0 217 341 0 24 chr1 87452081 87452163 -194741501 - MER5A DNA MER1_type -2 187 108 2258 115 7 0 chr1 87453077 87453382 -194740282 - AluSx SINE Alu -5 307 1 202 261 215 0 chr1 87453430 87453495 -194740169 - L2 LINE L2 -16 3256 3178 2267 104 0 0 chr1 87454767 87455064 -194738600 + AluSx SINE Alu 1 297 -15 583 221 87 17 chr1 87455076 87455248 -194738416 - MIR SINE MIR -5 257 74 22 0 0 0 chr1 87455576 87455598 -194738066 + AT_rich Low_complexity Low_complexity 1 22 0 395 129 129 0 chr1 87455783 87455853 -194737811 + MADE1 DNA Mariner 1 79 -1 445 273 8 0 chr1 87456111 87456239 -194737425 + L2 LINE L2 3185 3313 0 835 212 115 103 chr1 87456489 87456908 -194736756 + MLT1H LTR MaLR 124 547 -2 1924 124 50 30 chr1 87456975 87457274 -194736390 + AluSx SINE Alu 1 305 -7 1000 186 0 22 chr1 87457274 87457457 -194736207 + AluJb SINE Alu 134 312 0 3111 177 15 2 chr1 87457477 87458069 -194735595 + L1MB4 LINE L1 5581 6180 0 40703 33 22 2 chr1 87458080 87464109 -194729555 + L1PA2 LINE L1 2 6155 0 1103 167 11 11 chr1 87465173 87465359 -194728305 - AluJo SINE Alu -5 307 122 278 120 0 20 chr1 87465362 87465412 -194728252 - THE1C-int LTR MaLR -1531 49 1 2005 130 77 14 chr1 87465412 87465765 -194727899 - THE1C LTR MaLR 0 375 1 760 168 0 0 chr1 87465765 87465877 -194727787 - AluJo SINE Alu -187 115 3 242 377 26 26 chr1 87467158 87467272 -194726392 + L2 LINE L2 3148 3261 -11 430 320 0 25 chr1 87467387 87467509 -194726155 + MIR SINE MIR 31 149 -59 335 293 84 30 chr1 87467660 87467827 -194725837 - L2 LINE L2 -3 3310 3135 40 49 0 0 chr1 87467879 87467940 -194725724 + AT_rich Low_complexity Low_complexity 1 61 0 215 167 21 21 chr1 87468011 87468059 -194725605 + GA-rich Low_complexity Low_complexity 1 48 0 1924 160 0 0 chr1 87468198 87468480 -194725184 - AluJo SINE Alu -30 282 1 442 303 95 51 chr1 87470204 87470498 -194723166 - L2 LINE L2 -1 3271 2965 1756 168 3 3 chr1 87470805 87471096 -194722568 + AluJb SINE Alu 5 295 -17 246 32 0 0 chr1 87471725 87471756 -194721908 + (TG)n Simple_repeat Simple_repeat 1 31 0 318 345 61 42 chr1 87471780 87472110 -194721554 - L2 LINE L2 -935 2379 2044 589 261 178 62 chr1 87472422 87472855 -194720809 + LTR33 LTR ERVL 10 492 -29 465 269 85 20 chr1 87474439 87474640 -194719024 + HAL1b LINE L1 292 505 -843 22 70 0 0 chr1 87475143 87475186 -194718478 + AT_rich Low_complexity Low_complexity 1 43 0 3077 108 44 0 chr1 87475304 87475824 -194717840 + L1PBa LINE L1 1862 2404 -4459 2746 176 13 7 chr1 87475820 87476377 -194717287 - L1MB8 LINE L1 -347 5831 5272 * 35476 89 7 9 chr1 87476416 87482572 -194711092 - L1PA6 LINE L1 -1 6153 11 1484 205 16 8 chr1 87482599 87482979 -194710685 - L1MB8 LINE L1 -878 5268 4886 394 313 101 61 chr1 87482987 87483463 -194710201 + L1MC4a LINE L1 2540 3034 -3112 40 21 0 0 chr1 87483476 87483523 -194710141 + AT_rich Low_complexity Low_complexity 1 47 0 6811 172 12 14 chr1 87483523 87483646 -194710018 - L1 LINE L1 -1019 5127 5005 1944 138 0 49 chr1 87483646 87483951 -194709713 - AluSx SINE Alu -22 290 1 6811 172 12 14 chr1 87483951 87485231 -194708433 - L1 LINE L1 -1141 5005 3726 5168 164 20 15 chr1 87485230 87486419 -194707245 + L1MA6 LINE L1 5109 6300 0 * 538 224 179 0 chr1 87486566 87486700 -194706964 + MER5A DNA MER1_type 26 183 -6 429 338 100 42 chr1 87486732 87487273 -194706391 + L1MC4a LINE L1 3184 3755 -2391 2070 128 3 19 chr1 87487474 87487787 -194705877 - AluSx SINE Alu -4 308 1 228 287 0 11 chr1 87487859 87487946 -194705718 - L1ME3A LINE L1 -208 5962 5877 609 293 153 43 chr1 87488152 87488511 -194705153 + L1MC4a LINE L1 3772 4090 -2056 2349 105 0 13 chr1 87488511 87488826 -194704838 + AluSq SINE Alu 3 313 0 609 293 153 43 chr1 87488826 87489094 -194704570 + L1MC4a LINE L1 4090 4327 -1819 1566 177 51 14 chr1 87489094 87489388 -194704276 + AluJo SINE Alu 1 305 -7 609 293 153 43 chr1 87489388 87489519 -194704145 + L1MC4a LINE L1 4327 4614 -1532 21 57 0 0 chr1 87489616 87489651 -194704013 + AT_rich Low_complexity Low_complexity 1 35 0 1568 229 52 22 chr1 87489971 87490147 -194703517 + MLT2D LTR ERVL 1 170 -244 288 0 0 0 chr1 87490147 87490179 -194703485 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1568 229 52 22 chr1 87490179 87490403 -194703261 + MLT2D LTR ERVL 170 413 -1 1004 268 116 9 chr1 87490605 87491157 -194702507 + L1MC4a LINE L1 5301 5911 -1897 2675 88 6 8 chr1 87491194 87491559 -194702105 + THE1B LTR MaLR 1 364 0 868 154 166 0 chr1 87491753 87491928 -194701736 + MER47A DNA MER2_type 27 230 -136 355 299 45 8 chr1 87491928 87492062 -194701602 + L1MEc LINE L1 2087 2225 -4171 265 176 0 59 chr1 87492065 87492150 -194701514 + L1M4 LINE L1 3875 3954 -2192 282 304 22 22 chr1 87492489 87492627 -194701037 + L1M4 LINE L1 4031 4168 -1978 243 237 108 0 chr1 87492756 87492849 -194700815 + L1ME LINE L1 5811 5913 -257 * 8978 149 16 32 chr1 87492845 87494543 -194699121 - L1PA6 LINE L1 -4466 1680 11 26389 65 9 1 chr1 87494550 87498986 -194694678 + L1PA6 LINE L1 1685 6153 -1 412 341 88 29 chr1 87499166 87499371 -194694293 - L2 LINE L2 -519 2795 2579 1898 206 21 71 chr1 87499382 87499905 -194693759 - MLT1D LTR MaLR -8 497 1 900 332 23 54 chr1 87501597 87502181 -194691483 - L2 LINE L2 0 3272 2709 7529 91 5 21 chr1 87502387 87503473 -194690191 + MER11C LTR ERVK 4 1071 0 303 28 0 0 chr1 87504857 87504893 -194688771 + U1 snRNA snRNA 1 36 -129 1205 264 44 36 chr1 87505450 87505974 -194687690 + L1MC4 LINE L1 7380 7911 -131 192 77 0 0 chr1 87505974 87506000 -194687664 + (TGGG)n Simple_repeat Simple_repeat 2 27 0 1205 264 44 36 chr1 87506000 87506061 -194687603 + L1MC4 LINE L1 7911 7970 -72 1676 226 54 9 chr1 87506064 87506506 -194687158 + MLT1C LTR MaLR 6 467 0 24 0 0 0 chr1 87506587 87506611 -194687053 + AT_rich Low_complexity Low_complexity 1 24 0 312 288 0 0 chr1 87507132 87507205 -194686459 + MIR SINE MIR 28 100 -162 192 356 10 19 chr1 87508227 87508331 -194685333 - L3 LINE CR1 -3 1574 1472 557 261 67 15 chr1 87508475 87508670 -194684994 + L2 LINE L2 3109 3313 0 296 279 124 23 chr1 87508690 87508819 -194684845 - MIR SINE MIR -113 149 8 2958 105 16 0 chr1 87509041 87509470 -194684194 - L1PA11 LINE L1 0 6174 5739 452 178 186 0 chr1 87509552 87509670 -194683994 - MER63C DNA MER1_type -7 923 784 3221 194 55 9 chr1 87509673 87510731 -194682933 + L1MD1 LINE L1 4880 5992 -250 21 0 0 0 chr1 87510824 87510845 -194682819 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 87510871 87510908 -194682756 + AT_rich Low_complexity Low_complexity 1 37 0 1226 129 23 23 chr1 87510908 87511125 -194682539 - L1MA5A LINE L1 -10 6287 6071 690 140 17 117 chr1 87511127 87511306 -194682358 - MLT1A2 LTR MaLR -210 164 4 2281 237 40 5 chr1 87511306 87511902 -194681762 - MER63C DNA MER1_type -242 688 72 1666 80 34 46 chr1 87511962 87512225 -194681439 - L1PA7 LINE L1 -8 6146 5887 227 286 33 44 chr1 87513140 87513231 -194680433 + MIR SINE MIR 79 168 -94 288 244 104 67 chr1 87513349 87513484 -194680180 + MIR SINE MIR 3 143 -65 631 242 50 45 chr1 87513985 87514183 -194679481 - MIR3 SINE MIR -7 201 3 418 81 0 27 chr1 87514967 87515041 -194678623 + (TC)n Simple_repeat Simple_repeat 1 72 0 245 285 81 8 chr1 87515490 87515613 -194678051 + MLT1I LTR MaLR 272 403 -6 1742 144 13 46 chr1 87515841 87516146 -194677518 - AluJo SINE Alu -17 295 1 188 29 0 88 chr1 87518199 87518233 -194675431 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 222 37 0 0 chr1 87518974 87519001 -194674663 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 248 209 119 15 chr1 87519030 87519097 -194674567 - L2 LINE L2 -58 3255 3182 757 255 100 0 chr1 87520268 87520468 -194673196 + MIR SINE MIR 2 221 -41 303 347 24 16 chr1 87520994 87521118 -194672546 + L2 LINE L2 3147 3271 -1 1050 242 78 47 chr1 87521709 87522143 -194671521 - MLT1C LTR MaLR 0 467 15 454 248 93 16 chr1 87522951 87523080 -194670584 + MIR3 SINE MIR 45 183 -25 199 256 0 0 chr1 87523295 87523338 -194670326 - MIR SINE MIR 0 262 220 658 244 20 46 chr1 87523560 87523757 -194669907 - MIR SINE MIR -30 232 41 643 221 8 8 chr1 87523765 87523887 -194669777 + L2 LINE L2 3150 3271 -1 26 0 0 0 chr1 87524701 87524727 -194668937 + AT_rich Low_complexity Low_complexity 1 26 0 357 24 0 0 chr1 87526607 87526649 -194667015 + (CA)n Simple_repeat Simple_repeat 2 43 0 315 225 101 0 chr1 87527704 87527793 -194665871 + L2 LINE L2 3195 3292 -21 183 80 0 0 chr1 87528787 87528812 -194664852 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 198 0 0 0 chr1 87529817 87529839 -194663825 + (T)n Simple_repeat Simple_repeat 1 22 0 214 253 165 101 chr1 87530161 87530319 -194663345 + L2 LINE L2 3146 3313 0 13737 64 25 8 chr1 87531660 87533556 -194660108 + HERVL LTR ERVL 3138 5066 -588 372 220 63 6 chr1 87533738 87533897 -194659767 + HERVH LTR ERV1 333 500 -7213 * 15026 94 8 20 chr1 87533881 87536277 -194657387 + HERVH LTR ERV1 630 2995 -4718 846 129 27 0 chr1 87536256 87536403 -194657261 + HERVH LTR ERV1 3140 3290 -4423 * 2986 111 31 2 chr1 87536393 87536881 -194656783 + HERVH LTR ERV1 3492 3993 -3720 4023 149 0 1 chr1 87536883 87537546 -194656118 + HERVH LTR ERV1 4488 5149 -2564 1055 126 6 0 chr1 87537547 87537729 -194655935 + HERVH LTR ERV1 5600 5782 -1931 11007 27 2 1 chr1 87537878 87539903 -194653761 - L1PA3 LINE L1 -114 6041 4014 20143 35 10 0 chr1 87539904 87542509 -194651155 + L1PA3 LINE L1 1354 3985 -2161 360 262 7 69 chr1 87544151 87544296 -194649368 - MIR SINE MIR -26 236 101 274 391 73 17 chr1 87544360 87544539 -194649125 - L2 LINE L2 -7 3265 3077 439 308 8 0 chr1 87544778 87544895 -194648769 - L2 LINE L2 0 3313 3196 2215 157 3 16 chr1 87545098 87545468 -194648196 + MLT1A1 LTR MaLR 1 365 0 335 327 117 57 chr1 87546312 87546874 -194646790 - L2 LINE L2 -480 2834 2239 1322 229 30 44 chr1 87548492 87548781 -194644883 - L1ME3A LINE L1 0 6170 5888 2039 137 10 0 chr1 87548781 87549073 -194644591 - AluSx SINE Alu -14 298 4 1322 229 30 44 chr1 87549073 87549219 -194644445 - L1ME3A LINE L1 -282 5888 5741 435 300 189 14 chr1 87549391 87549751 -194643913 + L2 LINE L2 1865 2287 -1027 1620 225 119 35 chr1 87550027 87550574 -194643090 - MLT1E LTR MaLR 0 593 1 781 289 45 12 chr1 87551127 87551373 -194642291 - MIR SINE MIR -6 256 3 884 164 8 0 chr1 87551488 87551622 -194642042 - AluJb SINE Alu -177 135 1 657 184 77 10 chr1 87551626 87551833 -194641831 - MER33 DNA MER1_type -98 226 6 1547 210 7 0 chr1 87551895 87552190 -194641474 - AluJo SINE Alu -13 299 3 240 324 176 0 chr1 87552308 87552410 -194641254 + L2 LINE L2 3148 3267 -5 23 54 0 0 chr1 87554158 87554195 -194639469 + AT_rich Low_complexity Low_complexity 1 37 0 507 242 158 28 chr1 87554303 87554518 -194639146 + L1ME4a LINE L1 5153 5395 -751 432 321 99 34 chr1 87554631 87555126 -194638538 + L1ME4a LINE L1 5497 6023 -98 22 35 0 0 chr1 87555752 87555781 -194637883 + AT_rich Low_complexity Low_complexity 1 29 0 2591 143 19 21 chr1 87556134 87556561 -194637103 + MSTB LTR MaLR 1 426 0 2304 112 0 0 chr1 87557730 87558042 -194635622 - AluSq SINE Alu -1 312 1 468 219 92 8 chr1 87558046 87558165 -194635499 + MIR SINE MIR 124 252 -10 183 128 0 51 chr1 87558172 87558211 -194635453 - MIR SINE MIR -60 202 166 2179 146 62 0 chr1 87558216 87558601 -194635063 + MSTA LTR MaLR 1 409 -19 2141 136 3 0 chr1 87558747 87559057 -194634607 - AluSx SINE Alu -1 311 1 1021 175 38 0 chr1 87559206 87559417 -194634247 - L1MD1 LINE L1 0 6242 6024 1414 167 13 0 chr1 87559502 87559730 -194633934 - AluJb SINE Alu 0 312 82 3323 219 58 18 chr1 87559749 87560773 -194632891 - L1M4 LINE L1 -1269 4877 3813 508 272 62 22 chr1 87560778 87561100 -194632564 - L1M4 LINE L1 -2645 3501 3155 180 0 0 0 chr1 87562711 87562731 -194630933 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2353 106 0 0 chr1 87563827 87564130 -194629534 - AluSc SINE Alu -6 303 1 1228 205 121 76 chr1 87564375 87564873 -194628791 + MLT2B1 LTR ERVL 1 520 0 21 0 0 0 chr1 87564921 87564942 -194628722 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 87566536 87566559 -194627105 + AT_rich Low_complexity Low_complexity 1 23 0 207 152 0 0 chr1 87566568 87566614 -194627050 + T-rich Low_complexity Low_complexity 1 46 0 1178 82 0 0 chr1 87566616 87566775 -194626889 - L1PA3 LINE L1 -4 6151 5993 2027 55 10 0 chr1 87566875 87567165 -194626499 + HERVL-A1 LTR ERVL 5362 5654 0 2828 118 20 9 chr1 87567165 87567604 -194626060 + MLT2A1 LTR ERVL 1 444 0 221 395 12 0 chr1 87568210 87568296 -194625368 - MER5A DNA MER1_type 0 189 103 1110 306 67 21 chr1 87568480 87568911 -194624753 - L2 LINE L2 -1 3312 2862 464 0 18 0 chr1 87569864 87569920 -194623744 + (TG)n Simple_repeat Simple_repeat 2 58 0 189 0 0 0 chr1 87571915 87571936 -194621728 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 198 329 13 25 chr1 87571994 87572073 -194621591 + L2 LINE L2 3022 3099 -173 25 31 0 0 chr1 87573193 87573225 -194620439 + AT_rich Low_complexity Low_complexity 1 32 0 276 286 125 18 chr1 87574753 87574865 -194618799 - L2 LINE L2 0 3272 3149 185 171 0 122 chr1 87574967 87575008 -194618656 - L2 LINE L2 -15 3257 3222 545 298 144 0 chr1 87575993 87576174 -194617490 + MIR SINE MIR 17 223 -39 211 310 71 44 chr1 87576186 87576299 -194617365 + MIR SINE MIR 1 116 -146 1180 242 196 41 chr1 87576414 87576555 -194617109 - L2 LINE L2 0 3313 3195 1879 153 7 7 chr1 87576555 87576850 -194616814 + AluJb SINE Alu 1 295 -17 1180 242 196 41 chr1 87576850 87577732 -194615932 - L2 LINE L2 -118 3195 2088 934 232 36 0 chr1 87578004 87578198 -194615466 - MIR SINE MIR -2 260 60 1721 178 3 13 chr1 87578251 87578560 -194615104 + AluJb SINE Alu 1 306 -6 1490 231 84 40 chr1 87578724 87579338 -194614326 - L1ME2 LINE L1 -10 6154 5478 2364 42 28 0 chr1 87579397 87579682 -194613982 + AluY SINE Alu 1 293 -18 394 354 46 17 chr1 87579955 87580195 -194613469 + MIR SINE MIR 10 256 -6 509 328 50 5 chr1 87580301 87580502 -194613162 - MIR SINE MIR -34 228 19 926 59 8 0 chr1 87580649 87580768 -194612896 - L1PA11 LINE L1 -10 6164 6045 354 246 32 87 chr1 87581063 87581189 -194612475 + MER91B DNA MER1_type 12 130 -60 310 337 11 0 chr1 87581209 87581304 -194612360 + MER91B DNA MER1_type 92 187 -3 296 222 65 56 chr1 87581367 87581475 -194612189 - L2 LINE L2 -654 2660 2552 1501 220 108 26 chr1 87581639 87582093 -194611571 - LTR16C LTR ERVL 0 491 1 187 329 139 29 chr1 87582291 87582428 -194611236 + L2 LINE L2 3116 3267 -5 223 309 51 13 chr1 87582479 87582568 -194611096 - MIR SINE MIR -81 127 36 496 275 51 28 chr1 87583352 87583530 -194610134 + MIR SINE MIR 16 197 -65 624 196 13 95 chr1 87583572 87583730 -194609934 - MIR SINE MIR -73 189 45 246 225 25 75 chr1 87584237 87584317 -194609347 - L2 LINE L2 0 3313 3238 244 149 0 21 chr1 87584725 87584772 -194608892 + L2 LINE L2 3210 3255 -17 272 317 125 0 chr1 87585254 87585374 -194608290 - L2 LINE L2 0 3272 3138 2482 179 72 23 chr1 87585469 87586000 -194607664 - MER74A LTR ERVL 0 558 2 187 321 90 78 chr1 87586039 87586307 -194607357 - L2 LINE L2 -341 2973 2703 626 241 78 12 chr1 87586584 87586750 -194606914 + MIR SINE MIR 9 185 -77 406 345 61 29 chr1 87586751 87587393 -194606271 + ERVL LTR ERVL 4419 5116 -648 215 53 0 53 chr1 87587605 87587643 -194606021 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 200 227 0 0 chr1 87587659 87587703 -194605961 + (TA)n Simple_repeat Simple_repeat 1 44 0 247 239 22 43 chr1 87587704 87587796 -194605868 - L1MC4 LINE L1 -1339 6703 6614 766 231 59 10 chr1 87587940 87588280 -194605384 + MSTD LTR MaLR 1 396 0 267 162 9 48 chr1 87589521 87589626 -194604038 + (TA)n Simple_repeat Simple_repeat 1 101 0 439 137 0 91 chr1 87589699 87589896 -194603768 + (TA)n Simple_repeat Simple_repeat 2 180 0 263 212 30 40 chr1 87589898 87589997 -194603667 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 309 202 83 12 chr1 87589999 87590083 -194603581 + L1MC4 LINE L1 6614 6703 -1339 250 181 14 14 chr1 87590089 87590161 -194603503 + (TA)n Simple_repeat Simple_repeat 1 72 0 10015 182 39 42 chr1 87590214 87592993 -194600671 + L1M2 LINE L1 2664 5442 -744 180 111 0 0 chr1 87593182 87593209 -194600455 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 509 267 18 6 chr1 87593299 87593464 -194600200 - L1MC4a LINE L1 -1201 6607 6441 215 130 0 65 chr1 87593669 87593715 -194599949 + (GGAAA)n Simple_repeat Simple_repeat 4 46 0 390 290 133 31 chr1 87594056 87594311 -194599353 + L1MEd LINE L1 255 535 -5584 337 223 94 35 chr1 87594439 87594524 -194599140 + L1MEd LINE L1 739 818 -5301 2167 146 2 67 chr1 87594524 87594941 -194598723 + MLT1B LTR MaLR 1 390 0 337 223 94 35 chr1 87594941 87595057 -194598607 + L1MEd LINE L1 818 952 -5167 337 192 0 14 chr1 87595330 87595403 -194598261 - LTR43 LTR ERV1 -307 295 224 1746 221 53 50 chr1 87595607 87595669 -194597995 + L1ME3A LINE L1 5541 5601 -569 2269 109 0 0 chr1 87595669 87595973 -194597691 + AluSq SINE Alu 1 304 -9 1746 221 53 50 chr1 87595973 87596268 -194597396 + L1ME3A LINE L1 5601 5903 -267 1953 144 29 26 chr1 87596268 87596609 -194597055 - MER2 DNA MER2_type -2 342 1 1746 221 53 50 chr1 87596609 87596873 -194596791 + L1ME3A LINE L1 5903 6165 -5 495 335 118 26 chr1 87596917 87597299 -194596365 - L2 LINE L2 -10 3303 2887 365 270 20 20 chr1 87597548 87597648 -194596016 - L2 LINE L2 -558 2756 2657 502 269 48 85 chr1 87598685 87598956 -194594708 + MLT1J LTR MaLR 2 262 -249 906 220 12 56 chr1 87599454 87599704 -194593960 - LTR40b LTR ERVL 0 462 224 459 48 0 0 chr1 87599727 87599789 -194593875 + (TA)n Simple_repeat Simple_repeat 2 63 0 7180 44 10 0 chr1 87599792 87600949 -194592715 - L1PA5 LINE L1 -12 6142 4982 6257 46 4 0 chr1 87600949 87601760 -194591904 + L1PA5 LINE L1 4171 4984 -1162 645 222 126 0 chr1 87601803 87601970 -194591694 - LTR40a LTR ERVL -323 196 9 201 350 22 58 chr1 87602219 87602356 -194591308 + L2 LINE L2 2941 3072 -200 1737 144 39 83 chr1 87602987 87603349 -194590315 + MER7A DNA MER2_type 2 345 -1 249 211 44 33 chr1 87603640 87603730 -194589934 - MLT1J2 LTR MaLR -4 446 356 591 320 36 18 chr1 87604277 87604601 -194589063 + MLT1I LTR MaLR 79 391 -18 233 197 15 45 chr1 87604626 87604692 -194588972 - MLT1J2 LTR MaLR -23 427 364 193 271 0 0 chr1 87605595 87605643 -194588021 - L2 LINE L2 -5 3308 3261 243 61 0 0 chr1 87605861 87605894 -194587770 + (TG)n Simple_repeat Simple_repeat 1 33 0 498 248 34 0 chr1 87605993 87606110 -194587554 - MIR SINE MIR -22 240 120 2270 87 45 16 chr1 87606599 87606978 -194586686 + HERVH LTR ERV1 7324 7713 0 2645 86 103 5 chr1 87606978 87607386 -194586278 + LTR7 LTR ERV1 1 448 -2 2192 99 0 0 chr1 87608240 87608565 -194585099 + AluSg SINE Alu 1 325 0 556 308 54 14 chr1 87608576 87608797 -194584867 - MIR SINE MIR -2 260 31 2308 183 42 24 chr1 87610304 87611171 -194582493 + L1MC/D LINE L1 4836 5714 -488 21 36 0 0 chr1 87611486 87611514 -194582150 + AT_rich Low_complexity Low_complexity 1 28 0 878 283 100 66 chr1 87611617 87612551 -194581113 + L1MEd LINE L1 212 1176 -5029 304 318 92 76 chr1 87612696 87613055 -194580609 + L1MEd LINE L1 1636 2011 -4385 2253 109 22 5 chr1 87613055 87613423 -194580241 + L1MA8 LINE L1 5917 6290 -1 304 318 92 76 chr1 87613423 87613718 -194579946 + L1MEd LINE L1 2011 2300 -4096 240 345 0 0 chr1 87613772 87613830 -194579834 + Zaphod DNA AcHobo 2 59 -3972 554 239 145 13 chr1 87613838 87613997 -194579667 + MER5A DNA MER1_type 9 188 -1 934 253 101 12 chr1 87613997 87614254 -194579410 + Zaphod DNA AcHobo 51 330 -3701 1182 251 47 0 chr1 87614274 87614617 -194579047 + Zaphod DNA AcHobo 994 1352 -2679 410 183 0 0 chr1 87614616 87614676 -194578988 + MER115 DNA AcHobo 634 693 0 * 316 238 63 0 chr1 87614676 87614802 -194578862 + L1MEd LINE L1 2307 2440 -3775 21 71 0 0 chr1 87614942 87614984 -194578680 + AT_rich Low_complexity Low_complexity 1 42 0 2052 172 6 5 chr1 87615163 87615554 -194578110 + L1MB4 LINE L1 5670 6063 -117 254 348 96 0 chr1 87618413 87618528 -194575136 - L2 LINE L2 -7 3306 3181 213 270 226 35 chr1 87618622 87618737 -194574927 + L2 LINE L2 3134 3270 -2 255 260 82 0 chr1 87619854 87619927 -194573737 + MIR SINE MIR 44 122 -86 585 295 11 89 chr1 87620156 87620437 -194573227 - L2 LINE L2 -2 3270 3012 2449 131 98 5 chr1 87620997 87621403 -194572261 + MLT2A1 LTR ERVL 1 444 0 24533 68 13 0 chr1 87621403 87624517 -194569147 + HERVL-A1 LTR ERVL 1 3153 -2501 4217 195 35 39 chr1 87624813 87626758 -194566906 - L1MB8 LINE L1 -15 6163 4233 913 222 29 0 chr1 87627084 87627327 -194566337 - L1M4 LINE L1 -1664 4482 4233 2718 78 95 5 chr1 87629056 87629467 -194564197 + LTR7 LTR ERV1 1 448 -2 2899 82 12 2 chr1 87629469 87629873 -194563791 + HERVH LTR ERV1 1 408 -7305 3406 118 4 31 chr1 87629976 87630517 -194563147 + L1PA14 LINE L1 5621 6146 -15 325 289 83 64 chr1 87630532 87630736 -194562928 - L1M4 LINE L1 -1665 4481 4274 213 132 0 0 chr1 87630736 87630774 -194562890 + (TG)n Simple_repeat Simple_repeat 2 39 0 348 217 0 0 chr1 87630858 87630927 -194562737 - L1M4 LINE L1 -1979 4167 4099 335 255 106 0 chr1 87630939 87631033 -194562631 - U6 snRNA snRNA 0 107 4 195 114 0 0 chr1 87631415 87631450 -194562214 + (TA)n Simple_repeat Simple_repeat 2 36 0 613 294 14 32 chr1 87632965 87633183 -194560481 - L2 LINE L2 0 3313 3100 237 328 52 17 chr1 87633457 87633573 -194560091 - MIR SINE MIR -60 202 83 413 294 99 32 chr1 87634540 87634761 -194558903 - MLT1I LTR MaLR -76 333 98 561 280 103 10 chr1 87635110 87635419 -194558245 - MLT1D LTR MaLR 0 505 276 182 350 62 56 chr1 87635465 87635625 -194558039 - MIR SINE MIR -13 249 89 312 318 32 32 chr1 87636402 87636528 -194557136 - L2 LINE L2 -8 3305 3180 271 306 198 0 chr1 87636647 87636758 -194556906 - MIR SINE MIR -4 258 126 186 315 14 27 chr1 87636767 87636840 -194556824 - L2 LINE L2 -180 3092 3021 1385 140 0 0 chr1 87637258 87637465 -194556199 + AluSg/x SINE Alu 101 307 -3 254 315 33 28 chr1 87637477 87637658 -194556006 - L1MC/D LINE L1 -1997 5811 5630 310 132 0 0 chr1 87638656 87638709 -194554955 + AluSc SINE Alu 247 299 0 864 201 56 105 chr1 87638786 87639434 -194554230 - MER4B-int LTR ERV1 -4322 2436 1658 2447 61 0 3 chr1 87639435 87639745 -194553919 - AluY SINE Alu 0 311 3 1876 102 0 4 chr1 87639898 87640143 -194553521 - AluSc SINE Alu -63 246 3 606 171 0 55 chr1 87640357 87640503 -194553161 + MER57-int LTR ERV1 705 842 -6695 289 262 36 12 chr1 87640592 87640676 -194552988 + MER57-int LTR ERV1 3352 3437 -4100 32 26 0 0 chr1 87640835 87640874 -194552790 + AT_rich Low_complexity Low_complexity 1 39 0 1436 144 9 9 chr1 87640876 87641105 -194552559 + AluSx SINE Alu 1 229 -83 3440 206 26 31 chr1 87641207 87642367 -194551297 + L1MA7 LINE L1 4927 6078 -213 1336 69 10 25 chr1 87642469 87642671 -194550993 + HERVH LTR ERV1 7515 7713 0 2564 98 103 5 chr1 87642671 87643079 -194550585 + LTR7 LTR ERV1 1 448 -2 1752 164 0 10 chr1 87643933 87644225 -194549439 + AluSg SINE Alu 1 289 -21 380 309 50 41 chr1 87644281 87644501 -194549163 - MIR SINE MIR -10 252 31 401 302 16 16 chr1 87644701 87644830 -194548834 + MER94 DNA DNA 6 134 0 456 278 120 26 chr1 87645785 87645976 -194547688 - MIR SINE MIR 0 262 54 202 335 93 37 chr1 87646303 87646464 -194547200 - L2 LINE L2 -292 2980 2811 298 309 95 32 chr1 87647142 87647174 -194546490 - MIR SINE MIR -78 184 155 1768 177 53 0 chr1 87647174 87647513 -194546151 - MER46B DNA MER2_type -4 232 1 298 309 95 32 chr1 87647513 87647606 -194546058 - MIR SINE MIR -107 155 51 184 140 18 18 chr1 87647655 87647712 -194545952 + A-rich Low_complexity Low_complexity 1 57 0 535 308 21 33 chr1 87649224 87649465 -194544199 - MIR SINE MIR -53 155 16 384 273 94 48 chr1 87649766 87649940 -194543724 - MIR3 SINE MIR -10 198 19 428 260 226 63 chr1 87650017 87650494 -194543170 + HAL1b LINE L1 332 886 -462 2578 106 0 8 chr1 87650634 87651001 -194542663 - THE1B LTR MaLR 0 364 1 22 56 0 0 chr1 87651057 87651093 -194542571 + AT_rich Low_complexity Low_complexity 1 36 0 9323 37 7 1 chr1 87651336 87652507 -194541157 + L1P LINE L1 2420 3597 -2549 514 254 82 70 chr1 87652617 87652873 -194540791 + MSTB2 LTR MaLR 195 453 -4 809 265 81 66 chr1 87652879 87653211 -194540453 - L1MCb LINE L1 -5765 280 5 595 361 95 27 chr1 87653213 87653789 -194539875 - L2 LINE L2 -201 3071 2464 436 216 72 12 chr1 87654453 87654620 -194539044 + LTR50 LTR ERVL 3 177 -596 24 0 0 0 chr1 87655076 87655100 -194538564 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 87655349 87655384 -194538280 + AT_rich Low_complexity Low_complexity 1 35 0 504 296 138 33 chr1 87656388 87657322 -194536342 - L1M1 LINE L1 -3935 3811 2715 856 198 0 17 chr1 87657961 87658138 -194535526 - L1PB1 LINE L1 0 6151 5978 26 82 0 0 chr1 87658465 87658526 -194535138 + AT_rich Low_complexity Low_complexity 1 61 0 548 308 69 12 chr1 87658531 87658778 -194534886 - MIR SINE MIR 0 262 2 232 219 254 18 chr1 87659271 87659385 -194534279 - MER5A DNA MER1_type -2 187 47 21 0 0 0 chr1 87660974 87660995 -194532669 + AT_rich Low_complexity Low_complexity 1 21 0 204 277 0 0 chr1 87661678 87661761 -194531903 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 26 0 0 0 chr1 87661818 87661844 -194531820 + AT_rich Low_complexity Low_complexity 1 26 0 284 303 76 95 chr1 87663410 87663674 -194529990 - MIR SINE MIR -3 259 1 248 261 11 0 chr1 87663816 87663908 -194529756 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 2578 196 15 67 chr1 87663954 87664612 -194529052 - L1MB5 LINE L1 -7 6167 5544 1821 253 50 14 chr1 87664618 87665273 -194528391 - L1MB5 LINE L1 -743 5403 4744 343 322 40 66 chr1 87667559 87667832 -194525832 + L1MDa LINE L1 19 284 -6256 705 82 0 0 chr1 87667861 87667958 -194525706 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 206 105 26 0 chr1 87668077 87668115 -194525549 + GA-rich Low_complexity Low_complexity 3 41 0 346 267 0 59 chr1 87668649 87668784 -194524880 - L1ME2 LINE L1 -73 6091 5965 280 322 107 27 chr1 87668778 87669144 -194524520 - L1ME LINE L1 -4885 1499 1105 * 690 306 90 29 chr1 87669131 87669769 -194523895 - L1ME LINE L1 -5113 1259 585 1981 181 67 20 chr1 87669879 87670283 -194523381 + MSTC LTR MaLR 1 423 -5 350 302 55 25 chr1 87670380 87670615 -194523049 - L1MEc LINE L1 -4762 2360 2119 1828 187 20 33 chr1 87670688 87671078 -194522586 + MLT1B LTR MaLR 4 388 -2 3054 218 66 25 chr1 87671240 87672480 -194521184 - L1MB8 LINE L1 -12 6166 4869 263 316 70 29 chr1 87672594 87672866 -194520798 - L1MEc LINE L1 -4928 1495 1213 1340 97 0 0 chr1 87673655 87673841 -194519823 - L1PA7 LINE L1 -7 6147 5962 5173 66 18 0 chr1 87673841 87674589 -194519075 + L1PA7 LINE L1 5185 5944 -210 3633 229 22 15 chr1 87674586 87675892 -194517772 - L1M3 LINE L1 -501 5667 4360 * 745 167 8 0 chr1 87675905 87676025 -194517639 - FLAM_A SINE Alu -21 121 1 1641 207 11 11 chr1 87676026 87676383 -194517281 + MER65A LTR ERV1 62 418 -27 892 51 103 0 chr1 87676381 87676498 -194517166 - MER9 LTR ERVK -382 129 1 * 2819 251 60 43 chr1 87676500 87677667 -194515997 + MER65A-int LTR ERV1 61 1247 -3624 257 238 48 29 chr1 87677695 87677800 -194515864 + MER65A-int LTR ERV1 1516 1622 -6498 1351 25 0 6 chr1 87677827 87677984 -194515680 + AluY SINE Alu 2 157 -154 228 337 58 0 chr1 87678393 87678479 -194515185 - L1MEc LINE L1 -5985 438 348 3081 175 61 17 chr1 87678570 87679223 -194514441 - L1MA10 LINE L1 -1 6333 5652 2556 128 12 0 chr1 87679242 87679657 -194514007 - L1MA1 LINE L1 0 6302 5883 5019 87 9 1 chr1 87680234 87680928 -194512736 - L1PA7 LINE L1 -1937 4209 3511 8151 78 7 23 chr1 87680929 87682878 -194510786 + L1PA7 LINE L1 4220 6152 -2 253 228 0 0 chr1 87682900 87682957 -194510707 - L1MA10 LINE L1 -986 5373 5317 982 270 30 21 chr1 87683097 87683434 -194510230 - L1ME1 LINE L1 -21 6145 5806 728 278 63 4 chr1 87683433 87683688 -194509976 - L1MEc LINE L1 -5948 475 206 * 251 241 13 25 chr1 87683696 87683775 -194509889 - L1MEc LINE L1 -6327 96 19 24 67 0 0 chr1 87684056 87684101 -194509563 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr1 87684204 87684232 -194509432 + AT_rich Low_complexity Low_complexity 1 28 0 1535 284 20 36 chr1 87684233 87684782 -194508882 - MLT1F LTR MaLR 0 542 3 332 211 0 53 chr1 87685576 87685652 -194508012 - MER45B DNA AcHobo -427 613 542 1049 236 5 0 chr1 87685656 87685859 -194507805 - MER45B DNA AcHobo -833 207 4 2013 141 0 0 chr1 87686111 87686402 -194507262 + AluSx SINE Alu 11 301 -11 270 56 0 0 chr1 87686464 87686500 -194507164 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 264 30 0 0 chr1 87686733 87686766 -194506898 + (TG)n Simple_repeat Simple_repeat 2 34 0 293 111 0 22 chr1 87686937 87686982 -194506682 + L1P5 LINE L1 5680 5723 -433 * 927 187 7 93 chr1 87686980 87687105 -194506559 + L1M4 LINE L1 4101 4192 -1954 2077 120 0 0 chr1 87687105 87687423 -194506241 - AluSx SINE Alu 0 318 1 927 187 7 93 chr1 87687423 87687574 -194506090 + L1M4 LINE L1 4192 4354 -1792 3177 137 13 109 chr1 87687706 87688106 -194505558 - L1PB3 LINE L1 -9 6145 5837 347 89 18 0 chr1 87688106 87688162 -194505502 + (CA)n Simple_repeat Simple_repeat 2 58 0 3177 137 13 109 chr1 87688162 87688446 -194505218 - L1PB3 LINE L1 -317 5837 5527 6216 194 108 37 chr1 87688481 87689993 -194503671 + MER52A LTR ERV1 61 1755 0 1165 163 37 0 chr1 87689994 87690320 -194503344 - L1PB3 LINE L1 -715 5439 5100 1870 204 16 18 chr1 87690326 87690762 -194502902 - L1PB3 LINE L1 -2341 3805 3371 607 77 0 0 chr1 87690764 87690842 -194502822 - AluSc SINE Alu -38 271 194 334 259 54 27 chr1 87691448 87691595 -194502069 + L1M4 LINE L1 4557 4707 -1439 313 291 106 17 chr1 87691681 87691918 -194501746 + L1M4 LINE L1 4943 5200 -946 24 0 0 0 chr1 87692237 87692261 -194501403 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 87693673 87693694 -194499970 + AT_rich Low_complexity Low_complexity 1 21 0 3020 154 24 46 chr1 87694195 87694636 -194499028 - L1P4 LINE L1 -371 5795 5378 1545 212 3 7 chr1 87694636 87694929 -194498735 - AluSx SINE Alu -17 295 4 3020 154 24 46 chr1 87694929 87695389 -194498275 - L1P4 LINE L1 -788 5378 4910 275 213 0 0 chr1 87695390 87695451 -194498213 + L1P LINE L1 4501 4561 -1585 1155 202 0 4 chr1 87695453 87695696 -194497968 + L1 LINE L1 4655 4896 -1250 661 302 83 0 chr1 87695880 87696168 -194497496 - L1M4 LINE L1 -1312 4834 4523 443 297 45 22 chr1 87696171 87696393 -194497271 - L1M4 LINE L1 -1984 4162 3936 195 184 0 0 chr1 87696393 87696431 -194497233 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 237 35 35 chr1 87696431 87696545 -194497119 + L1MC4 LINE L1 6588 6701 -1341 4031 182 36 46 chr1 87696545 87696877 -194496787 - L1MA9 LINE L1 -167 6214 5880 216 0 0 0 chr1 87696877 87696901 -194496763 + (TG)n Simple_repeat Simple_repeat 2 25 0 4031 182 36 46 chr1 87696901 87698418 -194495246 - L1MA9 LINE L1 -501 5880 4390 318 217 0 0 chr1 87698529 87698598 -194495066 - L1MA9 LINE L1 -1985 4230 4162 1493 249 45 57 chr1 87698613 87698990 -194494674 - L1MA9 LINE L1 -3419 2796 2463 300 27 0 0 chr1 87698990 87699027 -194494637 + (CA)n Simple_repeat Simple_repeat 2 38 0 1493 249 45 57 chr1 87699027 87699361 -194494303 - L1MA9 LINE L1 -3752 2463 2126 1477 205 17 7 chr1 87699382 87699680 -194493984 - AluJb SINE Alu -8 304 4 1107 261 19 14 chr1 87699724 87700107 -194493557 + L1M4 LINE L1 1121 1759 -4554 297 54 54 0 chr1 87700174 87700230 -194493434 + (TA)n Simple_repeat Simple_repeat 1 59 0 36 40 0 0 chr1 87700275 87700325 -194493339 + AT_rich Low_complexity Low_complexity 1 50 0 1180 298 74 29 chr1 87700509 87701089 -194492575 + L1M4 LINE L1 3573 4178 -2204 1875 133 38 0 chr1 87701110 87701403 -194492261 + AluSx SINE Alu 1 304 -8 462 275 42 47 chr1 87701403 87701596 -194492068 + L1MD2 LINE L1 18 209 -6331 1706 218 64 8 chr1 87702346 87702818 -194490846 + L1MD2 LINE L1 3914 4411 -2129 407 217 127 18 chr1 87702832 87702998 -194490666 + L1MD2 LINE L1 4589 4772 -1768 4834 227 52 35 chr1 87703079 87705795 -194487869 + L1MC1 LINE L1 3567 6332 -1 1965 224 19 67 chr1 87705798 87706245 -194487419 + L1MD2 LINE L1 6112 6579 -174 1879 144 0 23 chr1 87706245 87706550 -194487114 + AluSx SINE Alu 1 298 -14 1965 224 19 67 chr1 87706550 87706578 -194487086 + L1MD2 LINE L1 6579 6607 -146 305 62 21 0 chr1 87706578 87706626 -194487038 + (CA)n Simple_repeat Simple_repeat 2 50 0 1965 224 19 67 chr1 87706626 87706820 -194486844 + L1MD2 LINE L1 6607 6750 -3 25 31 0 0 chr1 87707752 87707784 -194485880 + AT_rich Low_complexity Low_complexity 1 32 0 368 275 113 50 chr1 87707952 87708192 -194485472 + L1ME3A LINE L1 5914 6168 -2 210 231 0 0 chr1 87709089 87709141 -194484523 + (CA)n Simple_repeat Simple_repeat 1 52 0 180 372 39 0 chr1 87709466 87709544 -194484120 + L2 LINE L2 3229 3309 -4 25 0 0 0 chr1 87709583 87709608 -194484056 + AT_rich Low_complexity Low_complexity 1 25 0 272 194 57 120 chr1 87710008 87710183 -194483481 - L1ME4a LINE L1 -17 6104 5941 40 21 0 0 chr1 87710271 87710318 -194483346 + AT_rich Low_complexity Low_complexity 1 47 0 1350 214 90 0 chr1 87710621 87710887 -194482777 + AluJo SINE Alu 1 290 -22 6638 77 7 27 chr1 87712768 87713897 -194479767 - L1PA8 LINE L1 -1 6171 5068 306 50 0 0 chr1 87713944 87713984 -194479680 + (TA)n Simple_repeat Simple_repeat 1 40 0 392 161 0 0 chr1 87715133 87715195 -194478469 + MER93b LTR ERV1 12 73 -300 * 417 176 0 0 chr1 87715192 87715266 -194478398 - MLT1A2 LTR MaLR -295 79 6 241 371 0 21 chr1 87716553 87716650 -194477014 + MIR SINE MIR 38 132 -130 2224 97 7 3 chr1 87716669 87716967 -194476697 - AluSc SINE Alu -10 299 1 2001 241 85 20 chr1 87717228 87718016 -194475648 - L1M4 LINE L1 -2878 3766 2928 2096 258 17 13 chr1 87718034 87718558 -194475106 + L1PA15 LINE L1 1281 1806 -4981 775 165 88 18 chr1 87718571 87718741 -194474923 + L1PA13 LINE L1 5982 6163 0 5182 253 19 12 chr1 87718741 87720649 -194473015 + L1PA15 LINE L1 1819 3743 -3054 4941 151 14 25 chr1 87720654 87722175 -194471489 + L1PA15 LINE L1 4882 6378 -438 2646 125 79 0 chr1 87722175 87722554 -194471110 + MLT2A2 LTR ERVL 1 417 -36 420 118 0 0 chr1 87722554 87722622 -194471042 + (TA)n Simple_repeat Simple_repeat 2 69 0 2646 125 79 0 chr1 87722622 87722659 -194471005 + MLT2A2 LTR ERVL 417 450 -3 4941 151 14 25 chr1 87722659 87723092 -194470572 + L1PA15 LINE L1 6378 6814 -2 682 226 48 61 chr1 87723138 87723480 -194470184 - L1M4 LINE L1 -3725 2919 2582 367 261 36 24 chr1 87723600 87723765 -194469899 - L1M4 LINE L1 -5327 1215 1049 3821 240 71 41 chr1 87723839 87725230 -194468434 - L1M4 LINE L1 -4848 1694 292 1799 168 30 3 chr1 87725338 87725642 -194468022 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 87725738 87725766 -194467898 + AT_rich Low_complexity Low_complexity 1 28 0 356 271 40 38 chr1 87725774 87726375 -194467289 - L1M4c LINE L1 -4235 2149 1456 8244 221 32 7 chr1 87726410 87728462 -194465202 + L1 LINE L1 2763 4866 -1280 1595 91 0 0 chr1 87728657 87728867 -194464797 - AluY SINE Alu -1 310 101 20020 31 4 0 chr1 87728867 87732045 -194461619 - L1PA4 LINE L1 -24 6131 2945 293 348 70 18 chr1 87732604 87732831 -194460833 - MLT1L LTR MaLR -18 597 359 1253 228 10 21 chr1 87734897 87735187 -194458477 + AluJo SINE Alu 1 287 -25 201 195 0 0 chr1 87735210 87735251 -194458413 + (TA)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chr1 87737681 87737714 -194455950 + AT_rich Low_complexity Low_complexity 1 33 0 1898 191 50 35 chr1 87738464 87739006 -194454658 + MLT2A2 LTR ERVL 1 554 0 360 310 60 67 chr1 87739696 87740441 -194453223 + MER110-int LTR ERV1 2243 2982 -1665 1467 244 11 22 chr1 87741264 87741621 -194452043 - MLT1A1 LTR MaLR 0 365 13 24 77 0 0 chr1 87742389 87742441 -194451223 + AT_rich Low_complexity Low_complexity 1 52 0 795 283 71 30 chr1 87742681 87743077 -194450587 + MER92A LTR ERV1 1 412 0 681 166 225 0 chr1 87743079 87743248 -194450416 + MLT1E1 LTR MaLR 446 652 -2 21 0 0 0 chr1 87743552 87743573 -194450091 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 87743628 87743649 -194450015 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 87744151 87744172 -194449492 + AT_rich Low_complexity Low_complexity 1 21 0 4496 23 0 0 chr1 87744559 87745086 -194448578 - L1PA3 LINE L1 -349 5806 5280 2704 34 0 0 chr1 87745086 87745402 -194448262 + L1PA3 LINE L1 5836 6155 0 306 274 84 73 chr1 87745402 87745538 -194448126 + HAL1 LINE L1 907 1040 -1467 2249 57 0 27 chr1 87745538 87745837 -194447827 - AluY SINE Alu -15 296 6 306 274 84 73 chr1 87745837 87745974 -194447690 + HAL1 LINE L1 1040 1183 -1324 3629 137 23 2 chr1 87746088 87746819 -194446845 + L1PB1 LINE L1 5039 5791 -360 2656 88 0 31 chr1 87746848 87747236 -194446428 + L1PB1 LINE L1 5776 6151 0 301 233 38 25 chr1 87747264 87747423 -194446241 + L1MEc LINE L1 2156 2316 -4080 1413 274 147 27 chr1 87747483 87748008 -194445656 - MLT1E LTR MaLR -3 590 3 2975 256 69 35 chr1 87748023 87748723 -194444941 + L1MEc LINE L1 2345 3020 -3195 2110 113 0 3 chr1 87748723 87749032 -194444632 + AluSg SINE Alu 1 308 -2 2975 256 69 35 chr1 87749032 87749954 -194443710 + L1MEc LINE L1 3020 4022 -2193 761 271 139 9 chr1 87749963 87750416 -194443248 + L1MEc LINE L1 4234 4745 -1470 317 243 72 0 chr1 87750552 87750663 -194443001 - L1M4 LINE L1 -6421 121 3 448 168 20 10 chr1 87751767 87751868 -194441796 + CT-rich Low_complexity Low_complexity 3 104 0 2027 196 62 35 chr1 87751890 87752354 -194441310 - MER101B LTR ERV1 0 570 94 21 36 0 0 chr1 87753217 87753245 -194440419 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 87753992 87754021 -194439643 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr1 87754138 87754174 -194439490 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr1 87754407 87754450 -194439214 + AT_rich Low_complexity Low_complexity 1 43 0 467 252 236 8 chr1 87755328 87755570 -194438094 - L1M4 LINE L1 -2297 3849 3553 234 152 0 0 chr1 87755601 87755649 -194438015 - Alu SINE Alu -10 123 86 753 203 61 6 chr1 87755649 87755812 -194437852 - AluJo SINE Alu -130 182 11 274 281 140 22 chr1 87755852 87756436 -194437228 - L1M4 LINE L1 -2678 3468 2816 421 197 0 0 chr1 87756539 87756639 -194437025 - L1ME LINE L1 -348 5814 5715 571 214 58 0 chr1 87756645 87756799 -194436865 - L1MA8 LINE L1 -2 6289 6127 * 2485 185 17 35 chr1 87756796 87756876 -194436788 + L1MA8 LINE L1 5590 5670 -621 1922 98 14 44 chr1 87756876 87757173 -194436491 + AluSx SINE Alu 1 288 -24 2485 185 17 35 chr1 87757173 87757632 -194436032 + L1MA8 LINE L1 5670 6119 -172 231 170 0 0 chr1 87757715 87757762 -194435902 + (TG)n Simple_repeat Simple_repeat 2 48 0 2940 168 58 5 chr1 87757827 87758433 -194435231 - L1MA4 LINE L1 -5 6295 5658 362 222 65 9 chr1 87758437 87758545 -194435119 - L1MA4 LINE L1 -1754 4392 4279 * 5801 195 37 17 chr1 87758518 87759830 -194433834 - L1 LINE L1 -1475 4853 3515 4077 127 6 138 chr1 87759831 87760746 -194432918 + LTR25 LTR ERV1 1 794 0 4246 245 68 26 chr1 87760763 87763522 -194430142 - L1 LINE L1 -2812 3516 539 238 200 0 40 chr1 87764105 87764155 -194429509 - L1 LINE L1 -6092 167 120 183 347 61 95 chr1 87764509 87764771 -194428893 + L2 LINE L2 2897 3149 -123 275 222 48 24 chr1 87764798 87764965 -194428699 + (TA)n Simple_repeat Simple_repeat 2 172 0 24 53 0 0 chr1 87765102 87765140 -194428524 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 87765788 87765811 -194427853 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr1 87766049 87766081 -194427583 + AT_rich Low_complexity Low_complexity 1 32 0 922 241 118 29 chr1 87766581 87766896 -194426768 - MER2 DNA MER2_type 0 344 2 24 0 0 0 chr1 87767136 87767160 -194426504 + AT_rich Low_complexity Low_complexity 1 24 0 187 258 19 0 chr1 87767462 87767524 -194426140 + MIR SINE MIR 46 110 -98 1041 67 0 0 chr1 87767837 87767971 -194425693 + L1PA7 LINE L1 6019 6152 -2 21 89 0 0 chr1 87768002 87768058 -194425606 + AT_rich Low_complexity Low_complexity 1 56 0 2186 78 25 0 chr1 87768599 87768880 -194424784 - AluY SINE Alu -23 288 1 1482 211 21 27 chr1 87769758 87770090 -194423574 + MLT2C1 LTR ERVL 5 334 -63 717 192 3 3 chr1 87770093 87770413 -194423251 + (TA)n Simple_repeat Simple_repeat 1 320 0 2010 79 68 0 chr1 87771939 87772218 -194421446 + AluY SINE Alu 1 298 -13 703 130 0 0 chr1 87772415 87772515 -194421149 - AluS SINE Alu -213 100 1 32 0 0 0 chr1 87772570 87772602 -194421062 + AT_rich Low_complexity Low_complexity 1 32 0 220 200 36 0 chr1 87772631 87772686 -194420978 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 12930 202 59 37 chr1 87772818 87776053 -194417611 + L1MA3 LINE L1 11 3176 -4548 312 120 0 0 chr1 87776053 87776103 -194417561 + (TA)n Simple_repeat Simple_repeat 2 51 0 12930 202 59 37 chr1 87776103 87776126 -194417538 + L1MA3 LINE L1 3176 3197 -4527 11499 25 1 2 chr1 87776126 87778261 -194415403 - L1PA3 LINE L1 -2 6153 4021 12930 202 59 37 chr1 87778261 87778384 -194415280 + L1MA3 LINE L1 3197 3316 -4408 233 56 0 28 chr1 87778384 87778420 -194415244 + (TA)n Simple_repeat Simple_repeat 2 36 0 12930 202 59 37 chr1 87778420 87778633 -194415031 + L1MA3 LINE L1 3316 3523 -4201 180 0 0 0 chr1 87778633 87778653 -194415011 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 12930 202 59 37 chr1 87778653 87778737 -194414927 + L1MA3 LINE L1 3523 3604 -4120 207 0 0 0 chr1 87778737 87778760 -194414904 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 12930 202 59 37 chr1 87778760 87782623 -194411041 + L1MA3 LINE L1 3604 7724 0 229 379 57 24 chr1 87783171 87783382 -194410282 - MIR SINE MIR -4 258 41 270 296 0 0 chr1 87783812 87783883 -194409781 + L1MEc LINE L1 735 805 -6054 504 264 101 76 chr1 87784310 87784650 -194409014 + L1M4b LINE L1 1188 1549 -5306 2152 114 3 0 chr1 87784650 87784949 -194408715 + AluSg SINE Alu 1 300 -10 504 264 101 76 chr1 87784949 87785172 -194408492 + L1M4b LINE L1 1549 1765 -5090 4856 169 19 13 chr1 87785177 87786787 -194406877 + L1PA15 LINE L1 4552 6165 0 229 176 29 15 chr1 87786792 87786852 -194406812 + (TA)n Simple_repeat Simple_repeat 2 65 -5 189 0 0 0 chr1 87786852 87786873 -194406791 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 176 29 15 chr1 87786873 87786880 -194406784 + (TA)n Simple_repeat Simple_repeat 65 70 0 1195 264 107 15 chr1 87786881 87787339 -194406325 - MLT1D LTR MaLR -3 502 3 1272 281 28 78 chr1 87787341 87787634 -194406030 + L1M4b LINE L1 1754 2060 -4899 2081 100 17 0 chr1 87787634 87787935 -194405729 - AluSc SINE Alu -3 306 1 1272 281 28 78 chr1 87787935 87788348 -194405316 + L1M4b LINE L1 2060 2425 -4534 3002 26 0 3 chr1 87838746 87839123 -194354541 - L1P LINE L1 -1453 4693 4318 633 191 101 39 chr1 87839192 87839370 -194354294 - MER20 DNA MER1_type -1 218 30 213 180 0 80 chr1 87839825 87839875 -194353789 + L2 LINE L2 3268 3313 0 388 305 162 0 chr1 87840154 87840321 -194353343 - MIR SINE MIR -32 230 37 1017 219 60 4 chr1 87841205 87841470 -194352194 + L1MEc LINE L1 869 1148 -5990 2309 194 70 23 chr1 87841663 87842281 -194351383 + L1MEc LINE L1 1182 1828 -5310 514 190 36 7 chr1 87842279 87842416 -194351248 + L1ME1 LINE L1 5779 5919 -247 * 4953 120 23 3 chr1 87842518 87843659 -194350005 - L1PA14 LINE L1 -128 6033 4869 41 58 0 0 chr1 87843754 87843823 -194349841 + AT_rich Low_complexity Low_complexity 1 69 0 2001 127 0 7 chr1 87843905 87844213 -194349451 - AluSx SINE Alu 0 306 1 228 35 0 0 chr1 87844215 87844244 -194349420 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 267 279 50 43 chr1 87845204 87845365 -194348299 + L2 LINE L2 2108 2269 -1045 212 333 0 44 chr1 87846796 87846910 -194346754 + L2 LINE L2 2868 2976 -338 500 288 69 0 chr1 87847173 87847333 -194346331 + MIR SINE MIR 71 241 -21 187 270 79 32 chr1 87847654 87847717 -194345947 + L2 LINE L2 3207 3272 0 348 242 109 23 chr1 87849495 87849623 -194344041 + MIR SINE MIR 8 146 -116 310 89 0 0 chr1 87849643 87849688 -194343976 - MADE1 DNA Mariner -33 47 3 221 178 0 22 chr1 87850287 87850332 -194343332 + GA-rich Low_complexity Low_complexity 1 44 0 192 354 65 80 chr1 87850846 87851233 -194342431 + L2 LINE L2 2889 3269 -3 26 0 0 0 chr1 87852436 87852462 -194341202 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr1 87854647 87854682 -194338982 + (TG)n Simple_repeat Simple_repeat 2 36 0 720 249 96 16 chr1 87854778 87855091 -194338573 - L1ME4a LINE L1 -294 5827 5490 184 304 71 0 chr1 87855127 87855183 -194338481 - L3 LINE CR1 -8 1569 1510 2302 104 3 0 chr1 87855334 87855641 -194338023 + AluSx SINE Alu 1 308 -4 1453 207 4 4 chr1 87856469 87856730 -194336934 + AluJo SINE Alu 43 303 -9 595 253 33 22 chr1 87856868 87857050 -194336614 - MIR SINE MIR 0 262 79 365 306 83 44 chr1 87857678 87857858 -194335806 + MIR SINE MIR 6 192 -70 237 33 0 0 chr1 87858323 87858353 -194335311 + (A)n Simple_repeat Simple_repeat 1 30 0 1505 175 75 7 chr1 87858548 87858828 -194334836 + AluJb SINE Alu 1 299 -13 627 303 88 63 chr1 87859049 87859537 -194334127 + L2 LINE L2 2259 2758 -556 236 176 0 143 chr1 87860179 87860220 -194333444 + L1MEc LINE L1 1974 1997 -4399 2097 114 14 3 chr1 87860220 87860509 -194333155 - AluSp SINE Alu -21 292 1 236 176 0 143 chr1 87860509 87860558 -194333106 + L1MEc LINE L1 1997 2051 -4345 420 234 305 9 chr1 87862146 87862318 -194331346 - MIR SINE MIR 0 262 43 222 279 25 13 chr1 87862363 87862442 -194331222 - L2 LINE L2 -2 3311 3232 761 257 143 50 chr1 87862451 87862828 -194330836 - L2 LINE L2 -4 3268 2857 1071 222 105 41 chr1 87862955 87863298 -194330366 + MLT1A1 LTR MaLR 1 365 0 276 340 47 33 chr1 87863317 87863467 -194330197 - L2 LINE L2 0 3272 3121 192 327 59 13 chr1 87863931 87864084 -194329580 - L3b LINE CR1 -299 1284 1125 1761 203 3 10 chr1 87864172 87864478 -194329186 - AluJo SINE Alu -8 304 1 307 310 16 47 chr1 87864515 87864644 -194329020 + MIR3 SINE MIR 71 195 -13 305 309 64 0 chr1 87866464 87866574 -194327090 - MIR SINE MIR -38 224 108 231 228 0 18 chr1 87866672 87866729 -194326935 + A-rich Low_complexity Low_complexity 4 59 0 270 254 40 49 chr1 87866952 87867061 -194326603 + MIR SINE MIR 8 112 -118 2367 53 0 0 chr1 87867205 87867517 -194326147 - AluY SINE Alu 0 312 1 425 354 43 19 chr1 87867638 87867847 -194325817 + HAL1 LINE L1 822 1035 -1472 409 204 162 74 chr1 87867899 87868115 -194325549 + HAL1 LINE L1 2263 2497 -10 22 0 0 0 chr1 87868115 87868137 -194325527 + AT_rich Low_complexity Low_complexity 1 22 0 1897 168 45 20 chr1 87868711 87869222 -194324442 - L1MA4A LINE L1 -34 6269 5684 224 30 30 0 chr1 87870620 87870653 -194323011 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2028 164 0 0 chr1 87871738 87872036 -194321628 + AluJb SINE Alu 1 298 -14 185 256 0 0 chr1 87872127 87872166 -194321498 + L3 LINE CR1 1534 1572 -5 436 281 94 12 chr1 87873078 87873249 -194320415 - LTR16A1 LTR ERVL 0 457 273 386 227 0 64 chr1 87873294 87873404 -194320260 - LTR16A1 LTR ERVL -313 144 42 375 169 0 0 chr1 87873452 87873523 -194320141 + (TA)n Simple_repeat Simple_repeat 1 71 0 235 258 316 19 chr1 87874128 87874283 -194319381 - MIR SINE MIR 0 262 62 1249 150 0 81 chr1 87875391 87875637 -194318027 - AluJo SINE Alu -3 309 84 380 218 89 20 chr1 87876186 87876287 -194317377 - MIR SINE MIR -119 143 36 2278 117 0 3 chr1 87876402 87876711 -194316953 + AluSx SINE Alu 1 308 -4 336 298 167 0 chr1 87877013 87877127 -194316537 + L2 LINE L2 3140 3272 0 447 311 132 14 chr1 87879183 87879402 -194314262 + MIR SINE MIR 6 250 -12 1722 174 0 25 chr1 87880083 87880364 -194313300 + AluJo SINE Alu 1 274 -38 180 0 0 0 chr1 87880370 87880390 -194313274 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 236 333 27 0 chr1 87881123 87881198 -194312466 + L2 LINE L2 3188 3264 -8 404 284 128 0 chr1 87882597 87882745 -194310919 + MIR SINE MIR 34 200 -62 219 250 23 0 chr1 87882789 87882833 -194310831 + L2 LINE L2 3210 3254 -18 207 0 0 0 chr1 87883264 87883287 -194310377 + (A)n Simple_repeat Simple_repeat 1 23 0 268 222 0 0 chr1 87884394 87884448 -194309216 - MIR3 SINE MIR -4 204 151 189 0 0 0 chr1 87884620 87884641 -194309023 + (TTA)n Simple_repeat Simple_repeat 2 22 0 4272 22 4 2 chr1 87884642 87885144 -194308520 - L1PA4 LINE L1 -17 6138 5636 1206 120 38 29 chr1 87885306 87885515 -194308149 - THE1B LTR MaLR -153 211 1 526 295 84 0 chr1 87885998 87886188 -194307476 - MIR SINE MIR -10 252 47 261 105 0 0 chr1 87886201 87886239 -194307425 - THE1C LTR MaLR -33 342 305 481 298 53 40 chr1 87886331 87886874 -194306790 + L1MEd LINE L1 650 1199 -4920 700 263 18 83 chr1 87887001 87887328 -194306336 - L2 LINE L2 0 3313 3008 441 68 17 0 chr1 87887387 87887446 -194306218 + U7 snRNA snRNA 2 61 -2 22 35 0 0 chr1 87887448 87887477 -194306187 + AT_rich Low_complexity Low_complexity 1 29 0 717 304 39 9 chr1 87887533 87887781 -194305883 - MIR SINE MIR 0 262 7 264 253 97 65 chr1 87887775 87887882 -194305782 + L2 LINE L2 1865 1980 -1334 * 1440 175 96 13 chr1 87887882 87888196 -194305468 - MER58B DNA MER1_type -1 340 1 264 253 97 65 chr1 87888196 87888242 -194305422 + L2 LINE L2 1980 2023 -1291 * 732 223 141 0 chr1 87888240 87888424 -194305240 - MIR SINE MIR -9 253 44 186 216 27 0 chr1 87888424 87888461 -194305203 - MIR SINE MIR -196 66 29 464 216 65 7 chr1 87888616 87888755 -194304909 - MLT1J2 LTR MaLR -303 147 1 849 308 174 38 chr1 87888805 87889868 -194303796 + L2 LINE L2 2045 3263 -9 221 305 42 21 chr1 87889880 87889975 -194303689 + MIR SINE MIR 56 152 -110 2438 80 0 19 chr1 87889995 87890309 -194303355 + AluY SINE Alu 1 308 -3 5007 197 88 86 chr1 87890480 87891323 -194302341 + L1MCa LINE L1 21 861 -5565 1279 175 19 0 chr1 87891323 87891534 -194302130 - AluJo SINE Alu -13 299 85 5007 197 88 86 chr1 87891534 87892365 -194301299 + L1MCa LINE L1 861 1689 -4737 2249 117 0 7 chr1 87892365 87892674 -194300990 + AluSx SINE Alu 1 307 -5 5007 197 88 86 chr1 87892674 87894785 -194298879 + L1MCa LINE L1 1689 4027 -2399 784 234 22 39 chr1 87894767 87894998 -194298666 + L1MCa LINE L1 4271 4497 -1929 * 712 199 13 7 chr1 87895009 87895160 -194298504 - MSTB LTR MaLR -274 152 1 355 264 0 0 chr1 87895162 87895253 -194298411 + L1M4 LINE L1 5080 5170 -976 6767 30 12 3 chr1 87895671 87896531 -194297133 - L1PA4 LINE L1 -3 6152 5286 389 265 0 12 chr1 87896533 87896616 -194297048 - L2 LINE L2 -37 3235 3154 615 90 22 0 chr1 87896732 87896821 -194296843 - AluY SINE Alu -220 91 1 1588 303 65 70 chr1 87896932 87897931 -194295733 - L2 LINE L2 -440 2874 1881 284 180 33 16 chr1 87898385 87898446 -194295218 - L2 LINE L2 -1 3312 3251 2539 131 6 52 chr1 87898751 87899217 -194294447 - MER65A LTR ERV1 0 445 1 2494 237 32 3 chr1 87899218 87899843 -194293821 - MER65A-int LTR ERV1 0 4871 4229 2130 200 76 37 chr1 87899841 87900455 -194293209 - MER65A-int LTR ERV1 -520 4416 3530 * 325 200 106 12 chr1 87900451 87900536 -194293128 - LOR1-int LTR ERV1 -935 5396 5304 * 2205 178 97 109 chr1 87900544 87901169 -194292495 - LOR1-int LTR ERV1 -1144 4024 3393 405 0 0 0 chr1 87901169 87901214 -194292450 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2205 178 97 109 chr1 87901214 87901914 -194291750 - LOR1-int LTR ERV1 -1775 3393 2718 708 179 10 46 chr1 87901997 87902192 -194291472 - LOR1-int LTR ERV1 -2867 3731 3544 2004 116 20 0 chr1 87902429 87902721 -194290943 + AluSc SINE Alu 1 298 -11 306 200 78 0 chr1 87902735 87902825 -194290839 - LOR1-int LTR ERV1 -2957 2260 2164 1085 215 37 92 chr1 87902911 87903528 -194290136 - LOR1-int LTR ERV1 -2611 4065 1558 251 137 20 48 chr1 87903803 87903949 -194289715 + (CA)n Simple_repeat Simple_repeat 1 142 0 633 122 16 81 chr1 87903957 87904080 -194289584 - FLAM_C SINE Alu -18 125 11 674 173 31 31 chr1 87904100 87904118 -194289546 - L1MA5A LINE L1 -354 5943 5926 4536 190 29 12 chr1 87904118 87904805 -194288859 - L1MD3 LINE L1 -569 5743 5069 2294 99 0 0 chr1 87904805 87905098 -194288566 - AluSx SINE Alu -19 293 1 4536 190 29 12 chr1 87905098 87905909 -194287755 - L1MD3 LINE L1 -1243 5069 4368 246 62 0 0 chr1 87905910 87905942 -194287722 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4694 180 29 25 chr1 87907211 87908134 -194285530 + MER52A LTR ERV1 548 1474 -281 5474 84 1 1 chr1 87908135 87908871 -194284793 + THE1B-int LTR MaLR 845 1580 0 723 134 9 0 chr1 87908871 87908983 -194284681 + THE1B LTR MaLR 1 113 -251 4399 64 10 0 chr1 87908983 87909579 -194284085 - THE1A-int LTR MaLR -978 602 1 271 100 0 0 chr1 87909579 87909619 -194284045 - THE1A LTR MaLR 0 355 316 193 198 275 33 chr1 87909696 87909787 -194283877 - MIR SINE MIR -9 253 141 27 49 0 0 chr1 87910058 87910099 -194283565 + AT_rich Low_complexity Low_complexity 1 41 0 1798 180 7 0 chr1 87910112 87910401 -194283263 + AluJb SINE Alu 6 296 -16 403 269 57 22 chr1 87910538 87910765 -194282899 - L1ME4a LINE L1 -238 5883 5649 205 200 20 20 chr1 87910833 87910883 -194282781 + L2 LINE L2 3263 3312 -1 254 352 105 46 chr1 87910915 87911219 -194282445 + L2 LINE L2 2890 3211 -61 479 248 33 25 chr1 87912421 87912542 -194281122 + L2 LINE L2 3192 3313 0 302 283 73 6 chr1 87912630 87912807 -194280857 - L1ME3A LINE L1 -304 5866 5678 226 267 27 13 chr1 87912922 87912997 -194280667 + MIR3 SINE MIR 92 167 -41 473 341 70 0 chr1 87914211 87914425 -194279239 - MIR SINE MIR -2 260 32 903 158 10 51 chr1 87914427 87914623 -194279041 + MLT1A1 LTR MaLR 1 188 -177 986 191 0 0 chr1 87914721 87914904 -194278760 + MLT1A1 LTR MaLR 183 365 0 551 250 104 18 chr1 87914923 87915087 -194278577 - MER5B DNA MER1_type 0 178 1 271 250 17 0 chr1 87915858 87915918 -194277746 - MER81 DNA DNA -53 61 1 1514 246 68 51 chr1 87916077 87916984 -194276680 - HAL1 LINE L1 -758 1749 827 605 120 72 1 chr1 87917058 87917168 -194276496 - MLT1D LTR MaLR -2 503 351 977 166 0 33 chr1 87917169 87917350 -194276314 + FRAM SINE Alu 1 174 -2 1258 192 58 87 chr1 87917357 87917656 -194276008 - MLT1D LTR MaLR -135 370 83 2349 111 39 33 chr1 87917656 87918018 -194275646 - THE1B LTR MaLR 0 364 1 1258 192 58 87 chr1 87918018 87918099 -194275565 - MLT1D LTR MaLR -422 83 1 244 346 55 44 chr1 87918399 87918581 -194275083 + L2 LINE L2 2698 2881 -433 181 277 64 0 chr1 87918634 87918681 -194274983 + L2 LINE L2 3142 3191 -81 1058 190 45 0 chr1 87918698 87918877 -194274787 - MER5A DNA MER1_type 0 189 3 327 221 15 0 chr1 87918903 87918971 -194274693 + L2 LINE L2 3186 3254 -18 21 36 0 0 chr1 87919098 87919126 -194274538 + AT_rich Low_complexity Low_complexity 1 28 0 2457 146 31 79 chr1 87919771 87919938 -194273726 + L1MA8 LINE L1 5765 5938 -353 2209 127 3 0 chr1 87919938 87920237 -194273427 - AluSx SINE Alu -12 300 1 2457 146 31 79 chr1 87920237 87920248 -194273416 + L1MA8 LINE L1 5938 5948 -343 2481 70 0 0 chr1 87920248 87920547 -194273117 - AluY SINE Alu -12 299 1 2457 146 31 79 chr1 87920547 87920704 -194272960 + L1MA8 LINE L1 5948 6111 -180 2300 102 0 0 chr1 87920704 87921007 -194272657 + AluSg SINE Alu 1 303 -7 2457 146 31 79 chr1 87921007 87921216 -194272448 + L1MA8 LINE L1 6111 6285 -6 255 230 81 14 chr1 87921451 87921525 -194272139 + L2 LINE L2 3235 3313 0 381 131 0 0 chr1 87921525 87921586 -194272078 + (TGGA)n Simple_repeat Simple_repeat 2 62 0 28 29 0 0 chr1 87921646 87921681 -194271983 + AT_rich Low_complexity Low_complexity 1 35 0 279 309 50 0 chr1 87921758 87921897 -194271767 - L1ME4a LINE L1 -174 5947 5802 453 313 16 8 chr1 87922577 87922705 -194270959 - L2 LINE L2 -8 3264 3136 2089 115 74 12 chr1 87923295 87923618 -194270046 - MER61A LTR ERV1 0 343 1 223 308 127 23 chr1 87923913 87924134 -194269530 - L2 LINE L2 -557 2757 2514 210 282 64 45 chr1 87924872 87924982 -194268682 + MIR3 SINE MIR 2 113 -95 452 325 98 43 chr1 87925151 87925706 -194267958 + L2 LINE L2 2660 3241 -31 1270 198 145 19 chr1 87925785 87926109 -194267555 - MLT1A1 LTR MaLR 0 365 1 265 311 36 47 chr1 87926361 87926535 -194267129 + MIR SINE MIR 13 180 -61 681 247 135 0 chr1 87927501 87927671 -194265993 - MER91A DNA MER1_type -3 193 1 1337 255 115 56 chr1 87928270 87928429 -194265235 - MLT1H LTR MaLR -5 544 396 1915 184 17 53 chr1 87928429 87928841 -194264823 + MLT2C1 LTR ERVL 1 397 0 1337 255 115 56 chr1 87928841 87929195 -194264469 - MLT1H LTR MaLR -153 396 1 259 309 122 8 chr1 87929308 87929431 -194264233 + MIR SINE MIR 117 253 -9 1941 151 0 0 chr1 87929438 87929723 -194263941 + AluJb SINE Alu 1 285 -27 270 0 0 0 chr1 87930042 87930072 -194263592 + (TA)n Simple_repeat Simple_repeat 2 31 0 348 43 0 0 chr1 87930238 87930284 -194263380 + (TA)n Simple_repeat Simple_repeat 2 47 0 2266 103 0 7 chr1 87930288 87930590 -194263074 - AluY SINE Alu -11 300 1 351 321 65 12 chr1 87930616 87930784 -194262880 + MIR SINE MIR 24 200 -62 553 282 107 41 chr1 87931535 87931947 -194261717 - MLT1L LTR MaLR -23 592 154 1095 143 11 48 chr1 87932009 87932198 -194261466 + AluJb SINE Alu 1 182 -130 1944 147 73 20 chr1 87932200 87932541 -194261123 - MLT1D LTR MaLR -146 359 1 955 142 28 28 chr1 87932614 87932790 -194260874 - FRAM SINE Alu 0 176 1 297 318 144 0 chr1 87932801 87932933 -194260731 - L3 LINE CR1 -33 1544 1394 287 257 0 0 chr1 87933209 87933279 -194260385 + MIR SINE MIR 183 252 -10 1708 193 13 7 chr1 87934205 87934511 -194259153 - AluJo SINE Alu -4 308 1 216 231 0 0 chr1 87934559 87934611 -194259053 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 197 65 32 0 chr1 87934730 87934761 -194258903 + (TA)n Simple_repeat Simple_repeat 2 33 0 305 232 0 53 chr1 87935086 87935181 -194258483 - L1MC4 LINE L1 -1337 6705 6616 394 262 8 24 chr1 87936298 87936424 -194257240 + MIR SINE MIR 88 211 -51 1901 163 3 10 chr1 87936579 87936598 -194257066 - AluJb SINE Alu -8 304 286 321 26 0 0 chr1 87936598 87936636 -194257028 + (TG)n Simple_repeat Simple_repeat 2 39 0 1901 163 3 10 chr1 87936636 87936922 -194256742 - AluJb SINE Alu -26 286 1 2427 123 22 27 chr1 87937855 87938221 -194255443 + THE1B LTR MaLR 1 364 0 2399 100 0 3 chr1 87938791 87939100 -194254564 - AluSp SINE Alu -5 308 1 342 0 0 0 chr1 87939714 87939752 -194253912 + (TG)n Simple_repeat Simple_repeat 2 39 0 874 223 109 8 chr1 87940454 87940710 -194252954 - LTR16A1 LTR ERVL -14 443 162 403 200 27 120 chr1 87940781 87940931 -194252733 + MIR3 SINE MIR 52 187 -21 886 251 67 50 chr1 87941300 87941658 -194252006 + L1MC4a LINE L1 5547 5910 -1898 2074 132 7 0 chr1 87942085 87942380 -194251284 + AluSx SINE Alu 1 297 -15 386 195 12 12 chr1 87942382 87942464 -194251200 + MER58B DNA MER1_type 258 339 -2 432 0 0 0 chr1 87942587 87942635 -194251029 + (A)n Simple_repeat Simple_repeat 1 48 0 369 295 57 44 chr1 87942643 87942874 -194250790 + MIR3 SINE MIR 6 225 -37 291 292 66 0 chr1 87943219 87943356 -194250308 - MER103 DNA DNA -10 156 11 2032 113 27 10 chr1 87943477 87943770 -194249894 + AluSx SINE Alu 1 298 -14 1506 181 33 103 chr1 87944389 87944904 -194248760 - MER65A-int LTR ERV1 -6090 2030 1552 8006 212 53 67 chr1 87944905 87947548 -194246116 - MER65A-int LTR ERV1 -2366 2505 6 938 124 39 22 chr1 87947555 87947713 -194245951 - MER65A LTR ERV1 -6 439 276 3376 114 44 89 chr1 87947713 87948377 -194245287 - L1MA4 LINE L1 -6 6294 5661 938 124 39 22 chr1 87948377 87948396 -194245268 - MER65A LTR ERV1 -169 276 259 6422 192 16 8 chr1 87948398 87949170 -194244494 - L1M2 LINE L1 -4081 3087 2322 2265 95 16 7 chr1 87949170 87949475 -194244189 - AluSx SINE Alu -4 308 1 6422 192 16 8 chr1 87949475 87950569 -194243095 - L1M2 LINE L1 -4846 2322 1216 3838 171 21 5 chr1 87950571 87951185 -194242479 - L1M2 LINE L1 -6540 628 5 1687 154 18 11 chr1 87951189 87951474 -194242190 - MER65A LTR ERV1 -158 287 1 378 206 0 0 chr1 87951606 87951679 -194241985 - Tigger4(Zombi) DNA MER2_type 0 2731 2659 239 255 198 9 chr1 87951821 87951927 -194241737 + MIR SINE MIR 95 220 -42 423 0 0 0 chr1 87952104 87952151 -194241513 + (TG)n Simple_repeat Simple_repeat 2 48 0 29 53 0 0 chr1 87952192 87952230 -194241434 + AT_rich Low_complexity Low_complexity 1 38 0 862 258 19 46 chr1 87952239 87952576 -194241088 - L1MA9 LINE L1 -38 6274 5937 192 40 0 0 chr1 87952576 87952601 -194241063 + (TC)n Simple_repeat Simple_repeat 2 26 0 862 258 19 46 chr1 87952601 87952625 -194241039 - L1MA9 LINE L1 -375 5937 5914 719 83 0 68 chr1 87952625 87952817 -194240847 + (TA)n Simple_repeat Simple_repeat 2 180 0 319 196 225 57 chr1 87952927 87953136 -194240528 - L1ME4a LINE L1 -109 6012 5769 359 203 13 0 chr1 87953707 87953786 -194239878 + MER113 DNA MER1_type? 116 195 -326 228 193 269 17 chr1 87953841 87953960 -194239704 + MER113 DNA MER1_type? 303 451 -70 2006 133 13 0 chr1 87954039 87954341 -194239323 + AluSx SINE Alu 1 306 -6 2402 54 10 10 chr1 87954618 87954914 -194238750 + AluY SINE Alu 1 296 -15 447 274 145 28 chr1 87955351 87955530 -194238134 - MIR SINE MIR -7 255 56 465 261 55 55 chr1 87955816 87955981 -194237683 - MIR3 SINE MIR -37 171 7 284 284 28 62 chr1 87956130 87956341 -194237323 - L2 LINE L2 -175 3138 2935 3297 79 40 5 chr1 87956704 87957133 -194236531 - MLT2A1 LTR ERVL 0 444 1 195 129 0 0 chr1 87958973 87959004 -194234660 + (T)n Simple_repeat Simple_repeat 1 31 0 2311 90 0 0 chr1 87959511 87959811 -194233853 - AluSg SINE Alu -10 300 1 442 321 8 0 chr1 87959934 87960068 -194233596 - MIR SINE MIR 0 262 128 1744 194 159 64 chr1 87960114 87960692 -194232972 - Charlie1a DNA MER1_type -820 635 3 2515 142 91 73 chr1 87961258 87961764 -194231900 + MLT2B2 LTR ERVL 1 515 0 718 234 32 95 chr1 87962930 87962992 -194230672 - MIR SINE MIR -6 256 192 2374 81 0 3 chr1 87962992 87963288 -194230376 - AluY SINE Alu -16 295 1 718 234 32 95 chr1 87963288 87963477 -194230187 - MIR SINE MIR -70 192 21 265 309 95 16 chr1 87964149 87964275 -194229389 - L2 LINE L2 -5 3308 3173 283 328 166 53 chr1 87964723 87964874 -194228790 - L2 LINE L2 -738 2576 2443 5313 68 77 114 chr1 87964874 87965732 -194227932 + LTR12 LTR ERV1 1 826 0 283 328 166 53 chr1 87965732 87965826 -194227838 - L2 LINE L2 -871 2443 2361 1547 157 34 11 chr1 87965826 87966088 -194227576 - AluJb SINE Alu -44 268 1 283 328 166 53 chr1 87966088 87966575 -194227089 - L2 LINE L2 -953 2361 1760 643 245 13 69 chr1 87966669 87966902 -194226762 + MIR SINE MIR 26 245 -17 279 0 0 0 chr1 87968077 87968108 -194225556 + (T)n Simple_repeat Simple_repeat 1 31 0 337 235 0 0 chr1 87968116 87968184 -194225480 + L2 LINE L2 3205 3272 0 2184 99 10 19 chr1 87968703 87969016 -194224648 + AluSx SINE Alu 1 310 -2 183 42 0 0 chr1 87969067 87969091 -194224573 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1763 198 40 9 chr1 87969550 87969879 -194223785 - MER7A DNA MER2_type 0 346 10 272 383 0 9 chr1 87970142 87970257 -194223407 - L3 LINE CR1 -37 1540 1427 1293 253 92 31 chr1 87970302 87970756 -194222908 - MLT1J LTR MaLR 0 511 30 3764 77 19 4 chr1 87971293 87971825 -194221839 + MER57-int LTR ERV1 3849 4388 -3149 845 74 0 33 chr1 87971825 87971946 -194221718 + AluSq/x SINE Alu 1 117 -196 188 296 102 0 chr1 87972169 87972267 -194221397 + L2 LINE L2 3165 3272 0 373 268 140 12 chr1 87972370 87972613 -194221051 - L1ME4a LINE L1 0 6121 5848 551 257 140 57 chr1 87972642 87972924 -194220740 - L1ME3A LINE L1 0 6170 5869 350 241 9 46 chr1 87973098 87973206 -194220458 - L1ME3A LINE L1 -506 5615 5512 185 298 43 0 chr1 87973210 87973257 -194220407 - L3 LINE CR1 -480 1097 1049 290 248 107 47 chr1 87973496 87973645 -194220019 + L1ME4a LINE L1 5963 6120 -1 1589 138 39 105 chr1 87973665 87973999 -194219665 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 87974296 87974335 -194219329 + (TTGG)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr1 87974355 87974377 -194219287 + AT_rich Low_complexity Low_complexity 1 22 0 2105 133 0 0 chr1 87974796 87975089 -194218575 + AluSx SINE Alu 1 293 -19 410 149 17 21 chr1 87975121 87975252 -194218412 + MER53 DNA DNA 2 188 -1 229 304 54 0 chr1 87975427 87975519 -194218145 + MIR SINE MIR 123 219 -43 332 245 37 38 chr1 87975939 87976038 -194217626 - L1MC4a LINE L1 0 7808 7792 1386 169 4 4 chr1 87976038 87976274 -194217390 + MER46A DNA MER2_type 1 236 0 332 245 37 38 chr1 87976274 87976359 -194217305 - L1MC4a LINE L1 -16 7792 7708 612 304 21 5 chr1 87976464 87976655 -194217009 - MLT1I LTR MaLR -135 274 81 2286 110 0 0 chr1 87976664 87976965 -194216699 + AluSx SINE Alu 1 301 -11 405 347 8 0 chr1 87977064 87977188 -194216476 - MIR3 SINE MIR -46 162 38 432 284 96 39 chr1 87977953 87978182 -194215482 - MIR SINE MIR -1 261 20 209 189 0 0 chr1 87978594 87978631 -194215033 + A-rich Low_complexity Low_complexity 3 39 0 213 423 65 0 chr1 87978826 87978949 -194214715 - L2 LINE L2 -21 3251 3121 263 221 37 31 chr1 87978949 87979112 -194214552 + (TA)n Simple_repeat Simple_repeat 2 165 0 237 33 0 0 chr1 87980321 87980351 -194213313 + (GA)n Simple_repeat Simple_repeat 1 30 0 230 51 0 0 chr1 87980616 87980655 -194213009 - L1PA2 LINE L1 -4 6151 6113 2277 15 11 0 chr1 87980815 87981078 -194212586 + L1PA4 LINE L1 5599 5864 -291 308 269 21 21 chr1 87981171 87981264 -194212400 - MIR SINE MIR -109 153 61 225 308 100 33 chr1 87981539 87981659 -194212005 + L2 LINE L2 3136 3263 -9 1729 104 0 0 chr1 87981749 87981971 -194211693 + AluSx SINE Alu 1 222 -90 1870 136 3 56 chr1 87983960 87984284 -194209380 + AluJo SINE Alu 1 307 -5 1363 90 98 4 chr1 87984284 87984518 -194209146 + L1MA9 LINE L1 5758 6013 -299 1222 132 81 4 chr1 87984519 87984754 -194208910 + L1MA9 LINE L1 6055 6307 -5 260 274 30 30 chr1 87984949 87984978 -194208686 - L2 LINE L2 -435 2879 2851 2110 136 7 3 chr1 87984978 87985287 -194208377 + AluSx SINE Alu 1 310 -2 260 274 30 30 chr1 87985287 87985392 -194208272 - L2 LINE L2 -462 2852 2745 830 232 64 30 chr1 87985575 87985808 -194207856 + MIR SINE MIR 22 262 0 723 257 206 0 chr1 87985908 87986223 -194207441 + L1MC4 LINE L1 7517 7896 -146 208 317 0 0 chr1 87986292 87986352 -194207312 - MIR SINE MIR -2 260 201 189 339 36 54 chr1 87986554 87986666 -194206998 + L2 LINE L2 3158 3267 -5 314 232 97 58 chr1 87987009 87987164 -194206500 - MLT1J LTR MaLR -38 473 313 1058 258 72 18 chr1 87987578 87987653 -194206011 + L2 LINE L2 2610 2679 -634 4126 81 14 21 chr1 87987653 87988112 -194205552 - MER41A LTR ERV1 0 554 98 2283 112 0 3 chr1 87988112 87988417 -194205247 + AluSg SINE Alu 1 304 -6 4126 81 14 21 chr1 87988417 87988515 -194205149 - MER41A LTR ERV1 -456 98 1 1058 258 72 18 chr1 87988515 87989012 -194204652 + L2 LINE L2 2679 3214 -99 1998 143 3 0 chr1 87989330 87989624 -194204040 - AluSx SINE Alu -17 295 1 357 266 35 14 chr1 87989712 87989855 -194203809 - MER104 DNA Tc2 0 180 35 688 246 68 64 chr1 87990242 87990752 -194202912 - MLT1K LTR MaLR -27 561 14 297 281 34 48 chr1 87991045 87991191 -194202473 - MIR SINE MIR -45 217 74 4123 169 62 37 chr1 87991696 87991856 -194201808 - L1MB3 LINE L1 -1 6182 6027 1683 162 34 10 chr1 87991856 87992153 -194201511 - AluJo SINE Alu -5 307 4 4123 169 62 37 chr1 87992153 87993088 -194200576 - L1MB3 LINE L1 -156 6027 5116 237 33 0 0 chr1 87993088 87993118 -194200546 + (TTTG)n Simple_repeat Simple_repeat 4 33 0 1998 125 4 7 chr1 87993118 87993399 -194200265 - AluSx SINE Alu -32 280 1 4123 169 62 37 chr1 87993399 87993519 -194200145 - L1MB3 LINE L1 -1067 5116 5000 2241 172 55 0 chr1 87993519 87993920 -194199744 - MSTB LTR MaLR 0 426 4 4123 169 62 37 chr1 87993920 87994258 -194199406 - L1MB3 LINE L1 -1183 5000 4530 2643 49 3 0 chr1 87994656 87994964 -194198700 - AluY SINE Alu -2 309 1 2305 82 3 0 chr1 87995968 87996270 -194197394 + AluSx SINE Alu 1 303 0 210 163 0 61 chr1 87996865 87996914 -194196750 + (TATG)n Simple_repeat Simple_repeat 3 48 0 280 340 72 0 chr1 87997001 87997154 -194196510 + MIR SINE MIR 29 192 -70 230 333 83 0 chr1 87997404 87997524 -194196140 - MIR SINE MIR 0 262 133 2154 91 33 0 chr1 87997525 87997801 -194195863 - AluSg SINE Alu -13 297 13 211 200 0 0 chr1 87998272 87998307 -194195357 + (CA)n Simple_repeat Simple_repeat 2 36 0 562 163 10 0 chr1 87998834 87998932 -194194732 - MIR SINE MIR -50 212 114 1513 87 19 0 chr1 87999207 87999415 -194194249 - pTR5 LTR ERV1 -2046 392 181 279 213 66 74 chr1 87999415 87999537 -194194127 - LTR30 LTR ERV1 -70 724 548 3991 113 104 80 chr1 87999537 88000173 -194193491 - pTR5 LTR ERV1 -445 1993 1374 180 77 0 0 chr1 88000173 88000199 -194193465 + (CCGG)n Simple_repeat Simple_repeat 1 26 0 3991 113 104 80 chr1 88000199 88000484 -194193180 - pTR5 LTR ERV1 -1064 1374 738 335 265 105 28 chr1 88000692 88000873 -194192791 + MIR SINE MIR 59 253 -9 525 209 128 35 chr1 88001359 88001424 -194192240 - MER5A DNA MER1_type -1 188 130 2291 109 23 0 chr1 88001424 88001726 -194191938 + AluSx SINE Alu 1 309 -3 525 209 128 35 chr1 88001726 88001832 -194191832 - MER5A DNA MER1_type -59 130 1 194 309 0 15 chr1 88002560 88002628 -194191036 - L2 LINE L2 -2 3270 3204 329 285 138 15 chr1 88002690 88002820 -194190844 - MIR SINE MIR -15 247 102 1011 180 6 12 chr1 88002871 88003043 -194190621 + FAM SINE Alu 5 175 0 870 217 179 83 chr1 88003049 88003445 -194190219 - MLT1G LTR MaLR -49 506 73 1774 173 27 3 chr1 88004369 88004664 -194189000 + AluJo SINE Alu 1 302 -10 264 149 0 0 chr1 88004810 88004857 -194188807 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 193 332 140 15 chr1 88005461 88005726 -194187938 - L2 LINE L2 -411 2903 2606 535 269 34 13 chr1 88006033 88006182 -194187482 - MER117 DNA MER1_type -36 161 10 1895 174 0 16 chr1 88006246 88006563 -194187101 + AluJb SINE Alu 1 312 0 1189 122 26 11 chr1 88006681 88006870 -194186794 + AluSg/x SINE Alu 121 312 0 454 107 80 0 chr1 88007091 88007166 -194186498 - LTR54 LTR ERV1 -3 507 427 320 253 300 6 chr1 88007140 88007359 -194186305 - MER57A LTR ERV1 -56 347 102 * 538 154 66 0 chr1 88007365 88007456 -194186208 - LTR54 LTR ERV1 -411 99 3 267 367 25 0 chr1 88008596 88008716 -194184948 - MER117 DNA MER1_type -56 141 19 256 205 221 39 chr1 88008963 88009007 -194184657 - L1ME4a LINE L1 -11 6110 6075 1384 190 39 52 chr1 88009007 88009086 -194184578 + AluJb SINE Alu 1 80 -222 2294 106 0 6 chr1 88009086 88009397 -194184267 - AluSg SINE Alu -1 309 1 1384 190 39 52 chr1 88009397 88009622 -194184042 + AluJb SINE Alu 80 301 -1 256 205 221 39 chr1 88009622 88009704 -194183960 - L1ME4a LINE L1 -46 6075 5961 270 234 52 26 chr1 88010141 88010218 -194183446 - L2 LINE L2 -20 3293 3215 1968 150 14 0 chr1 88010237 88010530 -194183134 + AluSg SINE Alu 1 297 -13 183 286 0 0 chr1 88010630 88010672 -194182992 - L2 LINE L2 -273 3040 2999 340 254 50 66 chr1 88010819 88011000 -194182664 - L1ME4a LINE L1 0 6121 5944 280 296 158 25 chr1 88011515 88011718 -194181946 - HAL1b LINE L1 -665 683 454 829 208 0 6 chr1 88011718 88011877 -194181787 - AluJb SINE Alu -8 304 147 334 242 15 0 chr1 88012024 88012090 -194181574 + MER2 DNA MER2_type 279 345 0 207 0 0 0 chr1 88012117 88012140 -194181524 + (CA)n Simple_repeat Simple_repeat 2 24 0 6460 149 68 9 chr1 88012140 88013300 -194180364 - Tigger3b DNA MER2_type -2 1229 2 302 302 21 0 chr1 88013384 88013480 -194180184 + CT-rich Low_complexity Low_complexity 2 99 0 306 276 78 0 chr1 88013609 88013725 -194179939 - L1ME4a LINE L1 -1988 5820 5696 183 333 27 0 chr1 88014560 88014635 -194179029 - L2 LINE L2 -10 3262 3186 2031 127 0 0 chr1 88014638 88014921 -194178743 + AluSx SINE Alu 21 303 -9 305 252 9 36 chr1 88015004 88015115 -194178549 - L2 LINE L2 -195 3077 2970 1555 136 53 68 chr1 88015285 88015463 -194178201 - Charlie5 DNA MER1_type 0 2624 2445 1239 266 9 126 chr1 88015463 88015805 -194177859 - AluSx SINE Alu 0 302 1 1555 136 53 68 chr1 88015805 88016023 -194177641 - Charlie5 DNA MER1_type -179 2445 2234 562 207 9 0 chr1 88016025 88016141 -194177523 - Charlie5 DNA MER1_type -2490 122 6 1994 90 94 0 chr1 88017132 88017409 -194176255 - AluSx SINE Alu -9 303 1 21 0 0 0 chr1 88017419 88017440 -194176224 + AT_rich Low_complexity Low_complexity 1 21 0 3479 118 21 0 chr1 88017540 88018065 -194175599 - L1MA3 LINE L1 -1 6304 5769 823 147 0 0 chr1 88018065 88018181 -194175483 - AluJb SINE Alu -19 293 178 1339 185 61 27 chr1 88018181 88018478 -194175186 - AluJo SINE Alu -5 307 1 23 0 0 0 chr1 88018643 88018666 -194174998 + AT_rich Low_complexity Low_complexity 1 23 0 2204 110 0 0 chr1 88019128 88019410 -194174254 + AluSq SINE Alu 1 282 -31 181 0 0 0 chr1 88019410 88019430 -194174234 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 88019458 88019482 -194174182 + (CA)n Simple_repeat Simple_repeat 2 25 0 2865 115 45 11 chr1 88020184 88020653 -194173011 + MER31A LTR ERV1 1 485 0 1902 146 0 14 chr1 88020989 88021284 -194172380 + AluJo SINE Alu 1 291 -21 905 150 39 0 chr1 88022197 88022350 -194171314 + L1MB8 LINE L1 5801 5959 -219 362 198 33 83 chr1 88022617 88022738 -194170926 - MIR3 SINE MIR -6 202 88 2343 69 0 35 chr1 88022831 88023149 -194170515 - AluY SINE Alu -4 307 1 2081 119 11 0 chr1 88023251 88023536 -194170128 + AluSx SINE Alu 20 307 -5 474 275 60 44 chr1 88023673 88023855 -194169809 + MIR SINE MIR 2 186 -76 258 376 93 6 chr1 88023918 88024080 -194169584 + L2 LINE L2 3021 3196 -76 291 231 92 87 chr1 88024331 88024526 -194169138 - L1ME3A LINE L1 -11 6159 5964 834 230 63 4 chr1 88024596 88024835 -194168829 - L1ME3A LINE L1 -230 5940 5688 433 311 20 7 chr1 88025019 88025167 -194168497 + MER5A DNA MER1_type 3 152 -37 24 0 0 0 chr1 88025447 88025471 -194168193 + AT_rich Low_complexity Low_complexity 1 24 0 361 127 127 0 chr1 88026014 88026085 -194167579 - L1MC1 LINE L1 -1 6332 6253 2929 154 93 21 chr1 88026085 88026664 -194167000 - L1MC1 LINE L1 -289 6044 5424 239 231 39 0 chr1 88028938 88028990 -194164674 - L3b LINE CR1 0 1583 1530 912 281 50 38 chr1 88029019 88029479 -194164185 + L2 LINE L2 2764 3225 -88 344 194 19 68 chr1 88029521 88029624 -194164040 + MIR SINE MIR 101 198 -64 1645 160 41 10 chr1 88029759 88030052 -194163612 - AluJb SINE Alu -10 302 1 286 185 250 43 chr1 88030316 88030408 -194163256 - L2 LINE L2 -2 3311 3201 709 259 112 4 chr1 88031088 88031320 -194162344 + MIR SINE MIR 6 262 0 26 0 0 0 chr1 88034663 88034689 -194158975 + AT_rich Low_complexity Low_complexity 1 26 0 392 384 8 0 chr1 88035481 88035614 -194158050 + L2 LINE L2 2562 2695 -619 309 247 55 14 chr1 88035679 88035752 -194157912 + L2 LINE L2 2681 2756 -558 423 339 42 12 chr1 88035834 88035999 -194157665 + L2 LINE L2 3099 3268 -4 1542 101 0 5 chr1 88036314 88036532 -194157132 + AluSg/x SINE Alu 84 300 0 189 0 0 0 chr1 88036705 88036726 -194156938 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr1 88036875 88036895 -194156769 + (T)n Simple_repeat Simple_repeat 1 20 0 2221 116 0 7 chr1 88037288 88037591 -194156073 + AluSx SINE Alu 1 301 -11 193 351 50 61 chr1 88037774 88038150 -194155514 + L2 LINE L2 670 1041 -2273 2274 94 17 3 chr1 88038332 88038631 -194155033 - AluY SINE Alu -8 303 1 1623 159 24 28 chr1 88038872 88039202 -194154462 - AluJb SINE Alu 0 329 1 3795 152 51 14 chr1 88039484 88040186 -194153478 + L1MB2 LINE L1 5444 6171 0 2287 105 0 3 chr1 88040566 88040871 -194152793 - AluSg SINE Alu -6 304 1 1733 175 0 29 chr1 88040871 88041179 -194152485 - AluJb SINE Alu -13 299 1 287 346 42 103 chr1 88041208 88041349 -194152315 + L2 LINE L2 2973 3086 -186 2057 118 0 16 chr1 88041349 88041653 -194152011 - AluSq SINE Alu -12 301 3 287 346 42 103 chr1 88041653 88041823 -194151841 + L2 LINE L2 3086 3265 -7 316 284 0 0 chr1 88042355 88042436 -194151228 + L1MC4 LINE L1 6614 6694 -1348 2165 226 119 58 chr1 88042443 88043137 -194150527 + L1MC5 LINE L1 6346 6996 -965 2137 122 0 3 chr1 88043137 88043441 -194150223 + AluSc SINE Alu 1 303 -6 2165 226 119 58 chr1 88043441 88044159 -194149505 + L1MC5 LINE L1 6996 7914 -47 21 0 0 0 chr1 88044631 88044652 -194149012 + AT_rich Low_complexity Low_complexity 1 21 0 690 266 111 9 chr1 88044883 88044915 -194148749 - MIR SINE MIR -5 257 230 1249 103 108 28 chr1 88044915 88045128 -194148536 + MER30 DNA MER1_type 1 230 0 690 266 111 9 chr1 88045128 88045321 -194148343 - MIR SINE MIR -32 230 9 22 0 0 0 chr1 88045750 88045772 -194147892 + AT_rich Low_complexity Low_complexity 1 22 0 1446 69 0 0 chr1 88045980 88046154 -194147510 - AluSg SINE Alu -136 174 1 753 177 0 15 chr1 88046478 88046608 -194147056 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr1 88046678 88046714 -194146950 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 88047883 88047918 -194145746 + AT_rich Low_complexity Low_complexity 1 35 0 2093 111 21 7 chr1 88048873 88049161 -194144503 - AluSx SINE Alu -20 292 1 325 294 7 78 chr1 88049493 88049646 -194144018 - MIR SINE MIR -74 188 47 627 254 66 27 chr1 88049669 88049885 -194143779 - MIR SINE MIR -6 256 36 22 35 0 0 chr1 88050947 88050976 -194142688 + AT_rich Low_complexity Low_complexity 1 29 0 1951 156 3 7 chr1 88051059 88051367 -194142297 + AluSx SINE Alu 1 307 -5 863 264 57 20 chr1 88053796 88054092 -194139572 - L1MA9 LINE L1 -38 6274 5968 9284 169 62 30 chr1 88054228 88056962 -194136702 - L1MA9 LINE L1 -370 5942 3122 23 33 0 0 chr1 88057333 88057363 -194136301 + AT_rich Low_complexity Low_complexity 1 30 0 404 284 79 16 chr1 88057984 88058111 -194135553 + L2 LINE L2 3179 3313 0 2454 66 0 7 chr1 88059627 88059932 -194133732 - AluY SINE Alu -8 303 1 196 198 198 86 chr1 88059951 88060032 -194133632 + L3 LINE CR1 1021 1110 -467 454 150 0 50 chr1 88060089 88060169 -194133495 + Tigger2a DNA MER2_type 1 76 -358 22 35 0 0 chr1 88060304 88060333 -194133331 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 88060424 88060453 -194133211 + AT_rich Low_complexity Low_complexity 1 29 0 451 181 0 0 chr1 88060638 88060710 -194132954 + 5S rRNA rRNA 1 72 -49 2156 106 0 13 chr1 88062352 88062664 -194131000 + AluSg SINE Alu 1 308 -2 3312 153 29 32 chr1 88062897 88063426 -194130238 - L1MB5 LINE L1 -10 6164 5636 1895 150 3 23 chr1 88063426 88063732 -194129932 + AluSx SINE Alu 1 300 -12 3312 153 29 32 chr1 88063732 88063855 -194129809 - L1MB5 LINE L1 -538 5636 5514 193 374 168 36 chr1 88065758 88066092 -194127572 - L2 LINE L2 -66 3206 2829 222 361 46 15 chr1 88066119 88066249 -194127415 - L2 LINE L2 -601 2713 2580 509 67 0 13 chr1 88066249 88066324 -194127340 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 409 365 109 12 chr1 88066359 88066688 -194126976 - L2 LINE L2 -826 2488 2128 1109 152 222 16 chr1 88066998 88067241 -194126423 + AluJo SINE Alu 1 293 -9 44 35 0 0 chr1 88067263 88067321 -194126343 + AT_rich Low_complexity Low_complexity 1 58 0 1883 156 0 3 chr1 88067323 88067611 -194126053 + AluJo SINE Alu 3 289 -23 1646 174 36 23 chr1 88067816 88068120 -194125544 + AluJb SINE Alu 1 308 -4 201 162 0 0 chr1 88068139 88068176 -194125488 + A-rich Low_complexity Low_complexity 1 37 0 897 313 97 35 chr1 88068775 88069520 -194124144 + L1MEc LINE L1 35 825 -5571 294 261 45 36 chr1 88069864 88069975 -194123689 + MER21B LTR ERV1 1 112 -751 * 418 222 0 0 chr1 88069968 88070040 -194123624 + MER21B LTR ERV1 19 90 -773 2343 210 108 48 chr1 88070041 88070788 -194122876 + MER21B LTR ERV1 42 833 -30 2306 89 6 29 chr1 88071494 88071807 -194121857 + AluSx SINE Alu 1 306 -6 2744 104 26 19 chr1 88071988 88072419 -194121245 - MER1A DNA MER1_type 0 529 34 209 257 0 165 chr1 88074464 88074573 -194119091 + L3 LINE CR1 571 661 -916 1741 173 0 25 chr1 88075122 88075440 -194118224 + AluJb SINE Alu 1 310 -2 1668 163 17 17 chr1 88075980 88076275 -194117389 + AluJb SINE Alu 1 295 -17 183 42 0 0 chr1 88076278 88076302 -194117362 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr1 88077163 88077187 -194116477 + AT_rich Low_complexity Low_complexity 1 24 0 646 297 57 0 chr1 88079372 88079564 -194114100 - MIR SINE MIR 0 262 60 2195 93 7 0 chr1 88079676 88079990 -194113674 + AluSg SINE Alu 1 316 0 25 31 0 0 chr1 88081057 88081089 -194112575 + AT_rich Low_complexity Low_complexity 1 32 0 2409 92 0 0 chr1 88081410 88081715 -194111949 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr1 88081791 88081812 -194111852 + AT_rich Low_complexity Low_complexity 1 21 0 1732 154 37 10 chr1 88082217 88082516 -194111148 + AluJb SINE Alu 1 307 -5 325 168 0 119 chr1 88082771 88082872 -194110792 + MER5A DNA MER1_type 16 104 -85 25 0 0 0 chr1 88083022 88083047 -194110617 + AT_rich Low_complexity Low_complexity 1 25 0 631 179 24 0 chr1 88083344 88083467 -194110197 + FLAM_A SINE Alu 11 136 -6 1461 140 8 8 chr1 88084198 88084433 -194109231 + Tigger2 DNA MER2_type 2484 2718 0 651 231 91 11 chr1 88084439 88084625 -194109039 - MIR SINE MIR -8 254 54 259 370 171 16 chr1 88084619 88084870 -194108794 + L3 LINE CR1 1175 1464 -113 * 1517 205 13 0 chr1 88085143 88085441 -194108223 - AluJo SINE Alu -10 302 1 423 0 0 0 chr1 88085677 88085724 -194107940 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1530 178 14 18 chr1 88085724 88085880 -194107784 - AluJo SINE Alu -32 280 124 180 0 0 0 chr1 88085880 88085900 -194107764 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 1530 178 14 18 chr1 88085900 88086024 -194107640 - AluJo SINE Alu -188 124 1 2206 104 0 10 chr1 88086355 88086652 -194107012 + AluSx SINE Alu 1 294 -18 887 188 24 0 chr1 88086680 88086845 -194106819 + MER58B DNA MER1_type 173 341 0 808 236 62 87 chr1 88086846 88087295 -194106369 + L1MC4 LINE L1 7605 8042 0 276 301 14 0 chr1 88087554 88087627 -194106037 + CT-rich Low_complexity Low_complexity 1 74 0 1515 162 26 11 chr1 88087632 88087897 -194105767 - AluJo SINE Alu -31 281 13 233 291 18 0 chr1 88088488 88088543 -194105121 + L1MEd LINE L1 601 656 -5463 2130 95 4 0 chr1 88088592 88088866 -194104798 - AluSx SINE Alu -37 275 1 383 281 93 0 chr1 88089464 88089603 -194104061 + L1ME LINE L1 5578 5729 -441 419 309 48 36 chr1 88090083 88090248 -194103416 + MIR3 SINE MIR 40 206 -2 590 297 66 64 chr1 88090901 88091309 -194102355 + L3 LINE CR1 589 997 -580 554 342 66 17 chr1 88092147 88092448 -194101216 + L3 LINE CR1 1217 1532 -45 6686 159 133 73 chr1 88092517 88093637 -194100027 + L1MC3 LINE L1 5887 7239 -546 263 278 11 11 chr1 88093637 88093727 -194099937 + MLT1F1 LTR MaLR 35 124 -443 6686 159 133 73 chr1 88093727 88094309 -194099355 + L1MC3 LINE L1 7239 7785 0 2291 144 29 29 chr1 88094319 88094736 -194098928 - Tigger2a DNA MER2_type 0 434 18 22 0 0 0 chr1 88095387 88095409 -194098255 + AT_rich Low_complexity Low_complexity 1 22 0 250 300 60 10 chr1 88095636 88095736 -194097928 - MIR SINE MIR -57 205 101 22 35 0 0 chr1 88096027 88096056 -194097608 + AT_rich Low_complexity Low_complexity 1 29 0 214 313 112 78 chr1 88096596 88096970 -194096694 - L2 LINE L2 -3 3310 2924 325 387 65 22 chr1 88097211 88097441 -194096223 - L2 LINE L2 -572 2742 2503 565 355 111 18 chr1 88097475 88097915 -194095749 - L2 LINE L2 -1307 2007 1527 357 268 239 33 chr1 88097959 88098172 -194095492 - MIR SINE MIR -1 261 5 2213 117 3 0 chr1 88098867 88099167 -194094497 - AluSg SINE Alu -9 301 1 1850 157 3 10 chr1 88099349 88099643 -194094021 - AluJb SINE Alu -20 292 1 1322 183 10 77 chr1 88100146 88100457 -194093207 + AluJo SINE Alu 1 290 -22 484 241 43 17 chr1 88100468 88100584 -194093080 + MER5B DNA MER1_type 59 177 -1 19676 128 37 90 chr1 88101224 88103332 -194090332 + L1M1 LINE L1 11 2228 -5337 2172 136 41 6 chr1 88103332 88103677 -194089987 - THE1B LTR MaLR -7 357 1 19676 128 37 90 chr1 88103677 88103908 -194089756 + L1M1 LINE L1 2228 2470 -5095 2234 99 14 0 chr1 88103908 88104201 -194089463 + AluSg SINE Alu 1 297 -13 19676 128 37 90 chr1 88104201 88106174 -194087490 + L1M1 LINE L1 2470 4427 -3138 264 100 0 0 chr1 88106792 88106832 -194086832 + (TAGG)n Simple_repeat Simple_repeat 3 42 0 234 62 0 0 chr1 88106836 88106868 -194086796 + (CAGA)n Simple_repeat Simple_repeat 3 34 0 21 57 0 0 chr1 88107324 88107359 -194086305 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 88107996 88108025 -194085639 + AT_rich Low_complexity Low_complexity 1 29 0 2340 92 7 3 chr1 88108049 88108355 -194085309 + AluSq SINE Alu 1 307 -6 1621 163 17 43 chr1 88110191 88110491 -194083173 + AluJo SINE Alu 1 292 -20 966 175 184 9 chr1 88110691 88110919 -194082745 + AluJo SINE Alu 33 300 -12 2340 99 3 0 chr1 88111788 88112092 -194081572 - AluSq SINE Alu -6 307 3 364 306 85 23 chr1 88112278 88112466 -194081198 + MIR SINE MIR 16 212 -50 227 336 8 67 chr1 88112501 88112635 -194081029 - MER5A DNA MER1_type -57 132 7 1304 165 56 73 chr1 88112670 88112961 -194080703 + AluJo SINE Alu 1 288 -24 192 77 0 0 chr1 88112961 88112987 -194080677 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1304 165 56 73 chr1 88112987 88112998 -194080666 + AluJo SINE Alu 288 298 -14 1958 163 13 0 chr1 88113052 88113358 -194080306 + 7SLRNA srpRNA srpRNA 1 310 -10 209 326 35 85 chr1 88113374 88113418 -194080246 - MER5A DNA MER1_type -49 140 95 2237 100 7 3 chr1 88113418 88113718 -194079946 + AluSx SINE Alu 1 301 -11 209 326 35 85 chr1 88113718 88113814 -194079850 - MER5A DNA MER1_type -94 95 7 2170 121 0 13 chr1 88113938 88114252 -194079412 - AluJb SINE Alu -2 310 1 1174 257 30 35 chr1 88114333 88114738 -194078926 + L1MEc LINE L1 35 437 -5959 1096 227 60 54 chr1 88114815 88114966 -194078698 + MER63 DNA MER1_type 680 829 -231 1886 172 0 0 chr1 88114966 88115269 -194078395 + AluSx SINE Alu 1 303 -9 1096 227 60 54 chr1 88115269 88115470 -194078194 + MER63 DNA MER1_type 829 1034 -26 3378 257 81 41 chr1 88115493 88115806 -194077858 + L1MEc LINE L1 512 811 -5585 1846 167 34 0 chr1 88115806 88116100 -194077564 + AluJo SINE Alu 1 304 -8 3378 257 81 41 chr1 88116100 88116578 -194077086 + L1MEc LINE L1 811 1268 -5128 1746 162 24 10 chr1 88116578 88116868 -194076796 + AluSx SINE Alu 1 294 -18 3378 257 81 41 chr1 88116868 88117330 -194076334 + L1MEc LINE L1 1268 1710 -4686 2230 80 35 0 chr1 88117330 88117616 -194076048 + AluSp SINE Alu 1 296 -17 3378 257 81 41 chr1 88117616 88118055 -194075609 + L1MEc LINE L1 1710 2274 -4122 1307 219 146 14 chr1 88118111 88118619 -194075045 + L1MEc LINE L1 2821 3395 -2820 4747 150 30 53 chr1 88118654 88118832 -194074832 + L1MB7 LINE L1 4862 5043 -1141 1693 161 20 10 chr1 88118832 88119124 -194074540 + AluJo SINE Alu 2 296 -16 4747 150 30 53 chr1 88119124 88119214 -194074450 + L1MB7 LINE L1 5043 5134 -1050 1215 160 17 67 chr1 88119214 88119465 -194074199 + L1MB3 LINE L1 5896 6131 -52 2067 114 3 10 chr1 88119465 88119763 -194073901 + AluSc SINE Alu 1 296 -13 1215 160 17 67 chr1 88119763 88119811 -194073853 + L1MB3 LINE L1 6131 6180 -3 4747 150 30 53 chr1 88119811 88120628 -194073036 + L1MB7 LINE L1 5134 5913 -271 1699 164 24 17 chr1 88120628 88120920 -194072744 + AluJb SINE Alu 1 294 -18 4747 150 30 53 chr1 88120920 88121185 -194072479 + L1MB7 LINE L1 5913 6183 -1 1296 256 31 52 chr1 88121179 88121197 -194072467 + L1MEc LINE L1 3398 3415 -2800 * 2332 87 3 7 chr1 88121197 88121496 -194072168 + AluSp SINE Alu 1 298 -15 1296 256 31 52 chr1 88121496 88121632 -194072032 + L1MEc LINE L1 3415 3552 -2663 2501 63 7 0 chr1 88121632 88121934 -194071730 + AluY SINE Alu 1 304 -7 1296 256 31 52 chr1 88121934 88122351 -194071313 + L1MEc LINE L1 3552 3958 -2257 2530 130 37 49 chr1 88122473 88122543 -194071121 - MSTC LTR MaLR -3 425 356 823 146 31 23 chr1 88122543 88122673 -194070991 - FLAM_C SINE Alu -2 131 1 2530 130 37 49 chr1 88122673 88123032 -194070632 - MSTC LTR MaLR -72 356 1 1087 151 65 5 chr1 88123152 88123338 -194070326 + MLT1A1 LTR MaLR 169 365 0 250 219 140 26 chr1 88123422 88123536 -194070128 + MLT1K LTR MaLR 402 528 -60 1521 210 71 21 chr1 88124538 88124695 -194068969 + MER82 DNA MER2_type 24 172 -481 2120 132 6 3 chr1 88124695 88125006 -194068658 - AluSx SINE Alu 0 312 1 1521 210 71 21 chr1 88125006 88125404 -194068260 + MER82 DNA MER2_type 172 652 -1 298 91 0 45 chr1 88125406 88125450 -194068214 + MER8 DNA MER2_type 2 43 -196 2353 112 0 0 chr1 88125623 88125927 -194067737 + AluSx SINE Alu 3 306 -6 1594 154 3 69 chr1 88126069 88126387 -194067277 - AluJb SINE Alu -15 297 1 405 293 138 30 chr1 88126391 88126623 -194067041 - L1ME LINE L1 -301 5820 5564 1668 69 5 0 chr1 88126696 88126900 -194066764 + AluSp SINE Alu 37 241 -72 23 0 0 0 chr1 88126900 88126923 -194066741 + AT_rich Low_complexity Low_complexity 1 23 0 2096 97 12 78 chr1 88127107 88127438 -194066226 + AluSx SINE Alu 3 311 -1 1731 166 3 3 chr1 88127548 88127855 -194065809 - AluJo SINE Alu 0 307 1 3083 169 53 10 chr1 88127932 88128518 -194065146 - L1MB3 LINE L1 0 6183 5573 1936 137 13 0 chr1 88128857 88129164 -194064500 + AluSq SINE Alu 1 311 -2 1055 174 12 0 chr1 88129547 88129719 -194063945 - AluJo SINE Alu -19 293 120 2097 123 10 0 chr1 88129741 88130034 -194063630 - AluSg SINE Alu -14 296 1 867 133 0 0 chr1 88130041 88130161 -194063503 - AluJo SINE Alu -187 125 6 304 256 77 0 chr1 88130201 88130279 -194063385 + L1MC4a LINE L1 6504 6587 -1221 297 164 233 0 chr1 88130280 88130353 -194063311 + L1MC4 LINE L1 7482 7571 -471 1053 179 0 0 chr1 88130367 88130540 -194063124 + AluJb SINE Alu 137 309 -3 1826 169 3 10 chr1 88130545 88130853 -194062811 + AluJb SINE Alu 1 306 -6 783 185 137 10 chr1 88130860 88131065 -194062599 + L1MC4 LINE L1 7599 7829 -213 422 281 154 71 chr1 88131113 88131451 -194062213 - L3 LINE CR1 -302 1275 910 2440 74 0 3 chr1 88131475 88131772 -194061892 - AluSp SINE Alu -17 296 1 194 375 69 0 chr1 88131843 88131915 -194061749 + L2 LINE L2 2565 2641 -673 243 297 130 61 chr1 88132377 88132623 -194061041 - L3 LINE CR1 -847 730 468 25 0 0 0 chr1 88133396 88133421 -194060243 + AT_rich Low_complexity Low_complexity 1 25 0 2030 116 7 0 chr1 88133483 88133776 -194059888 + AluSx SINE Alu 1 295 -17 1927 138 0 21 chr1 88133974 88134263 -194059401 + AluSx SINE Alu 6 288 -24 233 146 122 0 chr1 88134284 88134325 -194059339 + MLT1A2 LTR MaLR 4 49 -325 456 264 96 99 chr1 88134348 88134723 -194058941 - L2 LINE L2 -8 3305 2932 2234 111 3 7 chr1 88135483 88135789 -194057875 - AluSx SINE Alu -7 305 1 263 202 144 58 chr1 88136084 88136188 -194057476 + MIR SINE MIR 33 145 -63 567 70 0 0 chr1 88136318 88136389 -194057275 + AluJ/FRAM SINE Alu 231 301 -11 251 329 0 14 chr1 88136401 88136471 -194057193 - MIR3 SINE MIR -131 77 9 2045 125 0 7 chr1 88137177 88137481 -194056183 - AluSx SINE Alu -10 302 1 460 285 7 1 chr1 88137601 88137751 -194055913 + L1MB7 LINE L1 5980 6138 -29 2053 99 10 33 chr1 88137982 88138284 -194055380 - AluSx SINE Alu -17 295 1 546 154 45 18 chr1 88138490 88138600 -194055064 + MER65A LTR ERV1 40 152 -293 412 269 58 29 chr1 88138617 88138721 -194054943 + FLAM_A SINE Alu 1 107 -35 1639 131 49 0 chr1 88138755 88139022 -194054642 + MER65A LTR ERV1 166 445 0 620 335 45 0 chr1 88139227 88139448 -194054216 + MIR SINE MIR 30 260 -2 550 176 0 29 chr1 88139536 88139638 -194054026 - Tigger7 DNA MER2_type 0 2587 2489 * 1069 204 36 0 chr1 88139636 88139856 -194053808 - Tigger7 DNA MER2_type -2220 267 40 549 209 178 37 chr1 88139991 88140154 -194053510 - MER5A DNA MER1_type -3 186 1 436 208 19 36 chr1 88140254 88140383 -194053281 + MER5A DNA MER1_type 2 189 0 1970 125 0 0 chr1 88141037 88141317 -194052347 + AluSx SINE Alu 1 280 -32 1002 226 91 52 chr1 88142020 88142329 -194051335 + L1ME3A LINE L1 5837 6157 -13 2177 132 0 0 chr1 88142392 88142695 -194050969 + AluSx SINE Alu 1 303 -9 24 32 0 0 chr1 88143322 88143353 -194050311 + AT_rich Low_complexity Low_complexity 1 31 0 1740 167 3 3 chr1 88143902 88144189 -194049475 - AluJo SINE Alu -24 288 2 215 172 46 35 chr1 88144479 88144566 -194049098 + A-rich Low_complexity Low_complexity 1 88 0 2143 117 7 0 chr1 88144780 88145078 -194048586 + AluSx SINE Alu 1 300 -12 1589 138 78 21 chr1 88147026 88147308 -194046356 - AluJo SINE Alu -14 298 1 22 35 0 0 chr1 88148778 88148807 -194044857 + AT_rich Low_complexity Low_complexity 1 29 0 2421 47 0 56 chr1 88149322 88149642 -194044022 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr1 88151193 88151216 -194042448 + GC_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr1 88151219 88151245 -194042419 + (CTG)n Simple_repeat Simple_repeat 3 28 0 686 265 163 27 chr1 88151556 88151930 -194041734 + L2 LINE L2 2868 3292 -21 2172 95 6 38 chr1 88152391 88152707 -194040957 + AluSx SINE Alu 1 306 -6 285 290 123 26 chr1 88152796 88152909 -194040755 - MIR SINE MIR -1 261 128 1166 291 99 7 chr1 88152909 88153321 -194040343 + LTR16A LTR ERVL 1 450 0 285 290 123 26 chr1 88153321 88153362 -194040302 - MIR SINE MIR -134 128 92 1295 172 146 4 chr1 88153811 88154078 -194039586 - AluSx SINE Alu -7 305 1 570 283 75 27 chr1 88154351 88154538 -194039126 - L2 LINE L2 -37 3235 3040 1631 164 72 39 chr1 88154540 88155393 -194038271 + SVA Other Other 391 868 -518 2413 52 10 0 chr1 88155576 88155864 -194037800 - AluY SINE Alu -20 291 1 188 278 111 0 chr1 88156045 88156117 -194037547 - L2 LINE L2 -273 2999 2920 290 240 184 16 chr1 88156206 88156287 -194037377 - L1ME4a LINE L1 -222 5899 5833 1774 182 0 10 chr1 88156287 88156589 -194037075 + AluJo SINE Alu 1 299 -13 290 240 184 16 chr1 88156589 88156632 -194037032 - L1ME4a LINE L1 -288 5833 5754 623 328 69 23 chr1 88156769 88157205 -194036459 - L2 LINE L2 -870 2444 1989 281 327 182 0 chr1 88157217 88157327 -194036337 - L2 LINE L2 -4 3268 3139 1653 174 26 22 chr1 88157509 88157820 -194035844 + AluJb SINE Alu 1 312 0 309 51 0 0 chr1 88158160 88158199 -194035465 + (TG)n Simple_repeat Simple_repeat 2 40 0 654 252 119 45 chr1 88158214 88158524 -194035140 - L1MC4 LINE L1 -186 7856 7524 2259 87 7 17 chr1 88158540 88158840 -194034824 + AluSq SINE Alu 1 297 -16 1822 131 76 0 chr1 88158847 88159122 -194034542 + AluSx SINE Alu 1 296 -16 6384 83 21 12 chr1 88159129 88159719 -194033945 + L1PB2 LINE L1 5192 5795 -356 2313 106 0 0 chr1 88159719 88160020 -194033644 + AluSq SINE Alu 5 305 -8 6384 83 21 12 chr1 88160020 88160374 -194033290 + L1PB2 LINE L1 5795 6144 -7 260 250 0 0 chr1 88160411 88160467 -194033197 - L1MC4 LINE L1 -551 7491 7436 2352 85 7 0 chr1 88160493 88160786 -194032878 + AluSx SINE Alu 8 302 -10 489 320 67 32 chr1 88161017 88161301 -194032363 + LTR16A LTR ERVL 157 450 0 191 375 71 18 chr1 88161301 88161413 -194032251 - MIR SINE MIR -116 146 29 2404 81 7 0 chr1 88161450 88161748 -194031916 - AluSq SINE Alu -13 300 1 1920 155 0 20 chr1 88161969 88162272 -194031392 + AluJb SINE Alu 1 297 -15 225 0 0 0 chr1 88162272 88162297 -194031367 + (TA)n Simple_repeat Simple_repeat 2 26 0 307 227 0 15 chr1 88162464 88162530 -194031134 + MIR SINE MIR 46 110 -152 1092 164 31 27 chr1 88162838 88163063 -194030601 + AluJo SINE Alu 84 309 -3 835 172 0 28 chr1 88163120 88163265 -194030399 + AluJo SINE Alu 1 141 -171 26 0 0 0 chr1 88163282 88163308 -194030356 + AT_rich Low_complexity Low_complexity 1 26 0 2123 141 7 0 chr1 88163310 88163615 -194030049 + AluSx SINE Alu 1 307 -5 2301 90 3 0 chr1 88164511 88164801 -194028863 + AluSx SINE Alu 1 291 -21 2215 88 7 36 chr1 88165776 88166083 -194027581 - AluSg SINE Alu -12 298 1 1164 132 0 6 chr1 88166206 88166388 -194027276 - AluY SINE Alu -8 303 123 476 103 0 0 chr1 88166494 88166562 -194027102 - Alu SINE Alu -241 69 2 6294 81 16 26 chr1 88166790 88167002 -194026662 + L1PA10 LINE L1 5269 5482 -686 1896 140 18 3 chr1 88167002 88167288 -194026376 + AluSx SINE Alu 1 290 -22 6294 81 16 26 chr1 88167288 88167979 -194025685 + L1PA10 LINE L1 5482 6162 -6 704 200 0 0 chr1 88168000 88168110 -194025554 + FLAM_A SINE Alu 1 110 -32 1143 192 42 54 chr1 88168111 88168372 -194025292 + AluJo SINE Alu 25 282 -30 23 54 0 0 chr1 88168372 88168409 -194025255 + AT_rich Low_complexity Low_complexity 1 37 0 2137 133 7 0 chr1 88168461 88168761 -194024903 - AluSx SINE Alu -9 303 2 314 250 190 0 chr1 88168986 88169086 -194024578 + L2 LINE L2 3190 3308 -5 1692 131 7 82 chr1 88169323 88169424 -194024240 + AluJb SINE Alu 30 137 -175 2208 127 7 0 chr1 88169424 88169731 -194023933 - AluSq SINE Alu -4 309 1 1692 131 7 82 chr1 88169731 88169935 -194023729 + AluJb SINE Alu 137 312 0 291 28 0 0 chr1 88170080 88170116 -194023548 + (A)n Simple_repeat Simple_repeat 1 36 0 229 261 46 0 chr1 88170681 88170746 -194022918 + LTR67 LTR ERVL 476 543 -14 605 286 90 82 chr1 88171012 88171284 -194022380 + L2 LINE L2 2783 3055 -258 2193 110 17 0 chr1 88171284 88171584 -194022080 + AluSq SINE Alu 1 305 -8 605 286 90 82 chr1 88171584 88171699 -194021965 + L2 LINE L2 3055 3168 -145 484 96 0 60 chr1 88171725 88171808 -194021856 + AluJb SINE Alu 58 135 -177 996 200 165 23 chr1 88171808 88172068 -194021596 + AluJb SINE Alu 1 297 -15 2397 98 0 0 chr1 88173126 88173432 -194020232 - AluSx SINE Alu -6 306 1 730 223 32 6 chr1 88173434 88173591 -194020073 - FRAM SINE Alu -15 161 1 28 0 0 0 chr1 88173602 88173630 -194020034 + AT_rich Low_complexity Low_complexity 1 28 0 1794 204 86 35 chr1 88173680 88174401 -194019263 - L1ME1 LINE L1 -81 6085 5227 536 289 53 5 chr1 88174409 88174617 -194019047 + HERVL LTR ERVL 4365 4582 -1072 474 341 58 3 chr1 88174643 88175014 -194018650 + HERVL LTR ERVL 4674 5029 -456 693 260 114 62 chr1 88175083 88175522 -194018142 - MLT1C LTR MaLR 0 467 6 487 296 0 15 chr1 88175561 88175693 -194017971 + HERVL LTR ERVL 5188 5317 -447 562 190 93 78 chr1 88176649 88176789 -194016875 - L1MC4 LINE L1 -498 7544 7397 669 219 39 0 chr1 88176789 88176917 -194016747 - FLAM_A SINE Alu 0 133 1 562 190 93 78 chr1 88176917 88177034 -194016630 - L1MC4 LINE L1 -645 7397 7283 280 135 79 22 chr1 88177075 88177164 -194016500 - L1MC4 LINE L1 -952 7090 6997 1629 182 7 27 chr1 88177164 88177461 -194016203 + AluJo SINE Alu 1 291 -21 212 137 20 0 chr1 88177468 88177519 -194016145 + (TA)n Simple_repeat Simple_repeat 2 53 0 202 216 0 0 chr1 88177562 88177613 -194016051 + (TA)n Simple_repeat Simple_repeat 2 52 0 198 156 0 0 chr1 88177673 88177718 -194015946 + (TA)n Simple_repeat Simple_repeat 2 46 0 360 196 46 98 chr1 88177718 88177806 -194015858 - L1MC4a LINE L1 -1115 6693 6615 312 91 0 0 chr1 88177806 88177850 -194015814 + (CA)n Simple_repeat Simple_repeat 2 45 0 360 196 46 98 chr1 88177850 88177914 -194015750 - L1MC4a LINE L1 -1193 6615 6549 439 209 0 29 chr1 88178020 88178125 -194015539 - L1MC4 LINE L1 -1451 6591 6490 2011 136 4 0 chr1 88179315 88179595 -194014069 + AluSx SINE Alu 1 281 -31 303 28 0 0 chr1 88179595 88179631 -194014033 + (CA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr1 88180305 88180329 -194013335 + AT_rich Low_complexity Low_complexity 1 24 0 1559 123 0 5 chr1 88180377 88180596 -194013068 + AluSg/x SINE Alu 66 283 -26 1522 173 0 85 chr1 88180617 88180946 -194012718 + AluJb SINE Alu 1 301 -11 21 36 0 0 chr1 88181070 88181098 -194012566 + AT_rich Low_complexity Low_complexity 1 28 0 1580 173 0 56 chr1 88181460 88181766 -194011898 - AluJo SINE Alu -23 289 1 901 201 0 0 chr1 88181767 88181921 -194011743 - FRAM SINE Alu -23 153 1 192 270 63 16 chr1 88182429 88182492 -194011172 + L2 LINE L2 3202 3267 -5 2263 97 0 0 chr1 88183275 88183573 -194010091 - AluSg SINE Alu -11 299 2 225 244 0 0 chr1 88184006 88184047 -194009617 + L2 LINE L2 3201 3241 -31 1755 159 3 24 chr1 88184121 88184417 -194009247 - AluJo SINE Alu -10 302 13 2751 109 61 29 chr1 88184425 88184902 -194008762 - LTR22B LTR ERVK 0 492 1 2186 98 7 3 chr1 88184926 88185213 -194008451 - AluSq SINE Alu -4 309 22 331 98 0 0 chr1 88185320 88185371 -194008293 + Alu SINE Alu 249 299 -3 758 160 0 32 chr1 88185551 88185676 -194007988 - AluJb SINE Alu -189 123 3 22 0 0 0 chr1 88185678 88185700 -194007964 + AT_rich Low_complexity Low_complexity 1 22 0 1559 117 13 4 chr1 88186591 88186821 -194006843 + AluSg/x SINE Alu 81 312 0 2122 102 3 3 chr1 88186942 88187227 -194006437 + AluSc SINE Alu 1 285 -24 2291 109 0 3 chr1 88187434 88187738 -194005926 + AluSx SINE Alu 1 303 -9 1864 176 6 10 chr1 88187743 88188056 -194005608 + AluJb SINE Alu 1 312 0 21 36 0 0 chr1 88188096 88188124 -194005540 + AT_rich Low_complexity Low_complexity 1 28 0 290 210 16 16 chr1 88189284 88189346 -194004318 - L2 LINE L2 0 3272 3211 189 94 0 0 chr1 88190221 88190253 -194003411 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr1 88190425 88190446 -194003218 + AT_rich Low_complexity Low_complexity 1 21 0 320 104 0 0 chr1 88191111 88191159 -194002505 - Alu SINE Alu -254 48 1 2033 128 3 30 chr1 88191224 88191359 -194002305 + AluSx SINE Alu 2 139 -173 2403 84 0 3 chr1 88191359 88191669 -194001995 + AluY SINE Alu 1 309 -2 2033 128 3 30 chr1 88191669 88191838 -194001826 + AluSx SINE Alu 139 298 -14 1797 140 3 54 chr1 88192360 88192675 -194000989 - AluJb SINE Alu -13 299 1 2266 93 0 0 chr1 88193152 88193443 -194000221 + AluY SINE Alu 1 291 -20 24 0 0 0 chr1 88193736 88193760 -193999904 + AT_rich Low_complexity Low_complexity 1 24 0 623 193 22 0 chr1 88194908 88195043 -193998621 - Charlie4 DNA MER1_type -6 1955 1818 1074 182 6 6 chr1 88195096 88195277 -193998387 + AluSx SINE Alu 1 181 -131 1058 85 0 0 chr1 88195377 88195506 -193998158 - AluYb8 SINE Alu -189 129 1 670 180 175 18 chr1 88195805 88196033 -193997631 - L1M4 LINE L1 -847 5299 5036 1706 227 34 72 chr1 88196042 88196318 -193997346 + L1ME1 LINE L1 5515 5800 -366 1972 115 59 3 chr1 88196318 88196605 -193997059 + AluSg SINE Alu 1 303 -7 1706 227 34 72 chr1 88196605 88196985 -193996679 + L1ME1 LINE L1 5800 6146 -20 2120 130 0 0 chr1 88197489 88197788 -193995876 - AluSx SINE Alu -9 303 5 1809 167 10 7 chr1 88197907 88198206 -193995458 + AluJo SINE Alu 1 300 -12 201 313 30 0 chr1 88198426 88198493 -193995171 + L2 LINE L2 3190 3258 -14 1705 197 0 20 chr1 88200448 88200748 -193992916 - AluJo SINE Alu -18 294 1 729 187 8 22 chr1 88200794 88200928 -193992736 + FLAM_C SINE Alu 2 133 0 2058 157 3 0 chr1 88200932 88201238 -193992426 + AluSx SINE Alu 1 307 -5 23 54 0 0 chr1 88201507 88201544 -193992120 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr1 88202095 88202133 -193991531 + AT_rich Low_complexity Low_complexity 1 38 0 389 318 207 24 chr1 88202469 88202802 -193990862 + L2 LINE L2 1904 2297 -1017 774 114 45 45 chr1 88203080 88203212 -193990452 - FLAM_C SINE Alu -1 132 1 356 246 79 16 chr1 88203344 88203364 -193990300 + MIR SINE MIR 45 62 -169 1748 171 3 13 chr1 88203364 88203668 -193989996 + AluJo SINE Alu 2 302 -10 356 246 79 16 chr1 88203668 88203771 -193989893 + MIR SINE MIR 62 164 -67 437 294 77 52 chr1 88203804 88204090 -193989574 + L2 LINE L2 2462 2754 -560 1860 159 10 3 chr1 88204647 88204949 -193988715 + AluJb SINE Alu 1 304 -8 1239 159 35 17 chr1 88205098 88205330 -193988334 + MER46A DNA MER2_type 1 236 0 23 68 0 0 chr1 88205827 88205871 -193987793 + AT_rich Low_complexity Low_complexity 1 44 0 2546 63 0 0 chr1 88206377 88206678 -193986986 + AluY SINE Alu 2 302 -9 375 61 212 0 chr1 88206688 88206754 -193986910 + MER116 DNA Mariner 1 80 0 2246 110 0 0 chr1 88208150 88208441 -193985223 - AluSc SINE Alu -18 291 1 22 35 0 0 chr1 88208480 88208509 -193985155 + AT_rich Low_complexity Low_complexity 1 29 0 2351 90 0 0 chr1 88210013 88210313 -193983351 - AluY SINE Alu -11 300 1 617 180 68 87 chr1 88211380 88211586 -193982078 - MER105 DNA DNA -2 202 1 2458 70 3 7 chr1 88211888 88212188 -193981476 - AluSq SINE Alu -14 299 1 25 65 0 0 chr1 88213344 88213390 -193980274 + AT_rich Low_complexity Low_complexity 1 46 0 791 221 22 54 chr1 88213802 88214024 -193979640 - MER20 DNA MER1_type 0 219 5 2268 87 0 7 chr1 88214449 88214778 -193978886 - AluSp SINE Alu 0 327 1 446 18 0 0 chr1 88214841 88214896 -193978768 - L1PA6 LINE L1 -5 6149 6095 868 200 0 0 chr1 88215011 88215161 -193978503 - AluJb SINE Alu -15 297 148 999 264 86 32 chr1 88215161 88215382 -193978282 + L1MEc LINE L1 446 653 -5743 2163 107 17 0 chr1 88215382 88215672 -193977992 + AluSc SINE Alu 1 295 -14 999 264 86 32 chr1 88215672 88215890 -193977774 + L1MEc LINE L1 653 909 -5487 1746 188 0 3 chr1 88216095 88216393 -193977271 + AluJo SINE Alu 1 297 -15 5390 64 8 0 chr1 88216393 88217139 -193976525 - L1P LINE L1 -3428 2718 1967 9697 43 3 1 chr1 88217141 88218431 -193975233 + L1P LINE L1 2715 4007 -2139 226 300 7 21 chr1 88218434 88218574 -193975090 - L1MC/D LINE L1 -2363 5445 5308 540 181 12 100 chr1 88218664 88218774 -193974890 - L1MC/D LINE L1 -1228 4918 4825 1619 186 6 47 chr1 88218774 88219091 -193974573 - AluJo SINE Alu -8 304 1 540 181 12 100 chr1 88219091 88219140 -193974524 - L1MC/D LINE L1 -1321 4825 4773 384 265 125 40 chr1 88219298 88219498 -193974166 - L1 LINE L1 -1136 5010 4794 2180 115 3 3 chr1 88219927 88220222 -193973442 + AluSg SINE Alu 5 299 -11 391 279 185 35 chr1 88220703 88220907 -193972757 - L1 LINE L1 -2824 3322 3061 2255 132 0 0 chr1 88220907 88221217 -193972447 - AluSx SINE Alu -2 310 1 391 279 185 35 chr1 88221217 88221299 -193972365 - L1 LINE L1 -3085 3061 2993 2058 134 24 0 chr1 88221578 88221876 -193971788 + AluSx SINE Alu 1 305 -7 1615 154 49 8 chr1 88221886 88222153 -193971511 + AluJb SINE Alu 1 278 -34 588 65 0 0 chr1 88222157 88222234 -193971430 + (GAAA)n Simple_repeat Simple_repeat 3 79 0 1867 151 0 26 chr1 88222906 88223211 -193970453 + AluJo SINE Alu 1 297 -15 2470 56 0 0 chr1 88223231 88223518 -193970146 - AluY SINE Alu -19 292 6 1246 136 0 6 chr1 88223676 88223852 -193969812 - AluSg/x SINE Alu -16 294 120 334 332 91 14 chr1 88224003 88224130 -193969534 + L3 LINE CR1 636 787 -790 2092 131 0 3 chr1 88224130 88224436 -193969228 + AluSq SINE Alu 1 305 -8 334 332 91 14 chr1 88224436 88224516 -193969148 + L3 LINE CR1 787 859 -718 822 149 0 45 chr1 88224641 88224775 -193968889 + FLAM_C SINE Alu 2 129 -4 314 314 41 8 chr1 88225001 88225122 -193968542 + MIR SINE MIR 63 187 -75 25 90 0 0 chr1 88225122 88225189 -193968475 + AT_rich Low_complexity Low_complexity 1 67 0 223 266 62 0 chr1 88225189 88225253 -193968411 + MIR SINE MIR 193 260 -2 187 326 157 0 chr1 88225409 88225498 -193968166 + L3 LINE CR1 1398 1500 -77 1811 157 7 7 chr1 88226748 88227042 -193966622 + AluSx SINE Alu 1 294 -18 723 206 0 22 chr1 88227440 88227576 -193966088 - FLAM_A SINE Alu 0 133 1 2405 64 24 3 chr1 88229510 88229808 -193963856 - AluY SINE Alu -7 304 1 386 192 80 53 chr1 88231867 88232018 -193961646 + Charlie7 DNA MER1_type 5 159 -2453 1851 157 28 0 chr1 88232103 88232389 -193961275 + AluJo SINE Alu 4 297 -15 2283 104 0 3 chr1 88232419 88232727 -193960937 + AluSx SINE Alu 1 307 -5 211 225 0 0 chr1 88232749 88232789 -193960875 + A-rich Low_complexity Low_complexity 2 41 0 649 116 0 0 chr1 88233110 88233196 -193960468 + AluS SINE Alu 3 88 -225 343 248 28 62 chr1 88233685 88233830 -193959834 + GA-rich Low_complexity Low_complexity 1 140 0 254 233 164 0 chr1 88234161 88234234 -193959430 + L2 LINE L2 3136 3220 -52 254 200 0 50 chr1 88234255 88234315 -193959349 + MER20 DNA MER1_type 4 60 -159 2314 95 3 0 chr1 88234438 88234734 -193958930 + AluSq SINE Alu 1 297 -16 1658 170 29 13 chr1 88234744 88235050 -193958614 + AluJb SINE Alu 1 311 -1 1619 169 10 32 chr1 88235143 88235451 -193958213 + AluJo SINE Alu 1 301 -11 1754 121 0 38 chr1 88235990 88236255 -193957409 - AluSx SINE Alu -57 255 1 1092 185 22 5 chr1 88236582 88236766 -193956898 - MER20 DNA MER1_type -26 193 7 1946 168 0 0 chr1 88237070 88237373 -193956291 - AluJb SINE Alu -9 303 1 293 250 0 0 chr1 88237621 88237677 -193955987 - AluS SINE Alu -244 57 2 521 102 10 61 chr1 88237839 88237937 -193955727 - L1MB8 LINE L1 0 6178 6086 238 330 201 17 chr1 88237937 88238295 -193955369 - L2 LINE L2 -339 2975 2552 203 373 56 24 chr1 88238370 88238496 -193955168 + L2 LINE L2 2601 2730 -584 225 250 0 0 chr1 88238541 88238585 -193955079 - MER96 DNA MER1_type? -11 164 121 1321 95 0 95 chr1 88238882 88238962 -193954702 - MER30B DNA MER1_type 0 190 104 2393 86 0 7 chr1 88238962 88239266 -193954398 - AluSq SINE Alu -11 302 1 1321 95 0 95 chr1 88239266 88239395 -193954269 - MER30B DNA MER1_type -86 104 1 1633 152 0 0 chr1 88240067 88240323 -193953341 + AluSx SINE Alu 54 309 -3 21 0 0 0 chr1 88240324 88240345 -193953319 + AT_rich Low_complexity Low_complexity 1 21 0 821 204 11 31 chr1 88240345 88240536 -193953128 - L1MB8 LINE L1 -111 6067 5881 268 91 0 0 chr1 88240536 88240580 -193953084 - Alu SINE Alu 0 299 256 1356 73 0 0 chr1 88240680 88240857 -193952807 - THE1B-int LTR MaLR -1403 177 1 2170 128 81 23 chr1 88240857 88241201 -193952463 - THE1B LTR MaLR 0 364 1 3249 190 110 36 chr1 88241202 88241322 -193952342 - L1MB8 LINE L1 -730 5450 5340 2029 132 0 13 chr1 88241322 88241625 -193952039 - AluSx SINE Alu -13 299 1 3249 190 110 36 chr1 88241625 88241744 -193951920 - L1MB8 LINE L1 -840 5340 5231 2279 110 3 13 chr1 88241744 88241918 -193951746 - AluSx SINE Alu -5 307 136 2112 122 0 50 chr1 88241918 88242238 -193951426 - AluSx SINE Alu -8 304 1 2279 110 3 13 chr1 88242238 88242373 -193951291 - AluSx SINE Alu -176 136 1 3249 190 110 36 chr1 88242373 88243124 -193950540 - L1MB8 LINE L1 -949 5231 4375 1700 166 19 26 chr1 88243137 88243445 -193950219 - AluJb SINE Alu -6 306 1 1217 176 74 85 chr1 88243452 88243805 -193949859 - L1MC5 LINE L1 -921 7040 6692 3792 171 102 82 chr1 88243928 88244234 -193949430 - L1MD2 LINE L1 -2 6357 6059 2142 82 0 0 chr1 88244234 88244501 -193949163 - AluY SINE Alu -44 267 1 3792 171 102 82 chr1 88244501 88244524 -193949140 - L1MD2 LINE L1 -300 6059 6038 2237 107 0 7 chr1 88244524 88244823 -193948841 - AluSq SINE Alu -16 297 1 3792 171 102 82 chr1 88244823 88244902 -193948762 - L1MD2 LINE L1 -321 6038 5962 1564 186 33 16 chr1 88244902 88245208 -193948456 + AluJo SINE Alu 1 311 -1 3792 171 102 82 chr1 88245208 88245497 -193948167 - L1MD2 LINE L1 -397 5962 5680 2179 123 7 0 chr1 88245497 88245797 -193947867 - AluSx SINE Alu -10 302 1 3792 171 102 82 chr1 88245797 88245946 -193947718 - L1MD2 LINE L1 -679 5680 5535 1631 204 40 118 chr1 88245946 88246549 -193947115 - LTR38 LTR ERV1 0 556 1 3792 171 102 82 chr1 88246549 88246720 -193946944 - L1MD2 LINE L1 -824 5535 5369 2348 92 0 10 chr1 88246720 88247024 -193946640 - AluSx SINE Alu -11 301 1 1810 178 10 0 chr1 88247027 88247336 -193946328 - AluJb SINE Alu 0 312 1 3792 171 102 82 chr1 88247336 88247368 -193946296 - L1MD2 LINE L1 -991 5368 5278 225 65 0 0 chr1 88247370 88247401 -193946263 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1887 132 20 34 chr1 88247403 88247698 -193945966 - AluSx SINE Alu -21 291 1 2310 106 0 6 chr1 88247710 88248022 -193945642 - AluSx SINE Alu -2 310 1 1784 199 93 44 chr1 88248023 88248526 -193945138 - L1MD3 LINE L1 -8 7987 7460 379 212 0 0 chr1 88248526 88248592 -193945072 + AluJ/FLAM SINE Alu 1 66 -236 938 179 7 20 chr1 88248592 88248743 -193944921 + AluJo/FRAM SINE Alu 140 288 -14 517 198 208 19 chr1 88248759 88248898 -193944766 - L1MC4a LINE L1 -513 7295 7184 2200 120 0 3 chr1 88248898 88249198 -193944466 - AluSx SINE Alu -13 299 1 517 198 208 19 chr1 88249198 88249270 -193944394 - L1MC4a LINE L1 -624 7184 7044 1461 171 107 0 chr1 88249271 88249551 -193944113 - AluJb SINE Alu -2 310 1 2029 94 7 14 chr1 88249562 88249837 -193943827 - AluSx SINE Alu -9 303 31 1986 238 84 80 chr1 88249837 88250056 -193943608 - L1MD3 LINE L1 -1406 6589 6372 2376 71 3 7 chr1 88250056 88250352 -193943312 - AluY SINE Alu -16 295 1 1034 189 0 12 chr1 88250356 88250520 -193943144 - FRAM SINE Alu -4 162 1 1986 238 84 80 chr1 88250520 88251168 -193942496 - L1MD3 LINE L1 -1625 6370 5714 2423 225 115 20 chr1 88251205 88252042 -193941622 - L1MD3 LINE L1 -1254 4892 3977 1191 227 159 31 chr1 88252043 88252240 -193941424 - MLT1C LTR MaLR 0 467 297 2236 128 45 31 chr1 88252240 88252599 -193941065 - THE1B LTR MaLR 0 364 1 1191 227 159 31 chr1 88252599 88252815 -193940849 - MLT1C LTR MaLR -170 297 1 1130 206 48 19 chr1 88252815 88253131 -193940533 - L1MD3 LINE L1 -2166 3980 3656 1307 149 17 25 chr1 88253197 88253438 -193940226 + Tigger5 DNA MER2_type 2085 2323 0 752 234 186 46 chr1 88253473 88253999 -193939665 - L1MD3 LINE L1 -2556 3590 2964 620 295 30 43 chr1 88255554 88255947 -193937717 - L1ME4a LINE L1 -16 6105 5718 568 279 81 46 chr1 88256198 88256395 -193937269 - MIR SINE MIR -12 250 47 1502 181 10 33 chr1 88256431 88256734 -193936930 + AluJo SINE Alu 7 302 -10 27 29 0 0 chr1 88257349 88257383 -193936281 + AT_rich Low_complexity Low_complexity 1 34 0 2641 106 15 23 chr1 88257606 88258003 -193935661 + L1MA3 LINE L1 5912 6305 0 1937 133 63 0 chr1 88258377 88258663 -193935001 - AluSx SINE Alu -8 304 1 1819 187 0 3 chr1 88258758 88259068 -193934596 + AluJo SINE Alu 1 309 -3 441 54 0 0 chr1 88259073 88259129 -193934535 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1658 251 64 39 chr1 88259189 88259439 -193934225 + MER21B LTR ERV1 13 282 -581 3413 161 26 2 chr1 88259439 88259980 -193933684 + MER41C LTR ERV1 1 554 0 1658 251 64 39 chr1 88259980 88260195 -193933469 + MER21B LTR ERV1 282 490 -373 804 201 68 84 chr1 88260209 88260472 -193933192 + MER21B LTR ERV1 548 806 -57 333 236 42 0 chr1 88260517 88260589 -193933075 - MIR SINE MIR -179 83 9 762 173 15 15 chr1 88260988 88261121 -193932543 - AluJo SINE Alu -178 134 2 1933 103 33 4 chr1 88261582 88261892 -193931772 - AluSx SINE Alu 0 318 1 639 111 0 0 chr1 88262812 88262902 -193930762 + 5S rRNA rRNA 1 90 -31 2255 112 0 6 chr1 88263809 88264123 -193929541 - AluSx SINE Alu 0 312 1 388 266 57 51 chr1 88264402 88264579 -193929085 - HAL1 LINE L1 -13 2494 2317 647 124 13 131 chr1 88264901 88265054 -193928610 - AluJb SINE Alu -176 136 2 4259 184 77 44 chr1 88266578 88267127 -193926537 - L1MB2 LINE L1 -4 6167 5638 246 32 0 0 chr1 88267127 88267158 -193926506 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1513 198 43 4 chr1 88267162 88267440 -193926224 - AluJo SINE Alu -23 289 1 4259 184 77 44 chr1 88267440 88267613 -193926051 - L1MB2 LINE L1 -535 5636 5470 2298 139 80 0 chr1 88267613 88267950 -193925714 - THE1B LTR MaLR 0 364 1 12911 82 3 9 chr1 88267950 88268260 -193925404 - THE1B-int LTR MaLR 0 1580 1270 2368 91 3 0 chr1 88268260 88268557 -193925107 - AluSp SINE Alu -15 298 1 12911 82 3 9 chr1 88268557 88269836 -193923828 - THE1B-int LTR MaLR -310 1270 1 2170 128 81 23 chr1 88269836 88270180 -193923484 - THE1B LTR MaLR 0 364 1 4259 184 77 44 chr1 88270180 88270301 -193923363 - L1MB2 LINE L1 -701 5470 5355 2041 129 0 13 chr1 88270301 88270604 -193923060 - AluSx SINE Alu -13 299 1 4259 184 77 44 chr1 88270604 88270723 -193922941 - L1MB2 LINE L1 -816 5355 5241 2218 119 3 13 chr1 88270723 88270899 -193922765 - AluSx SINE Alu -3 309 136 2112 122 0 50 chr1 88270899 88271219 -193922445 - AluSx SINE Alu -8 304 1 2218 119 3 13 chr1 88271219 88271354 -193922310 - AluSx SINE Alu -176 136 1 4259 184 77 44 chr1 88271354 88272105 -193921559 - L1MB2 LINE L1 -930 5241 4375 1700 166 19 26 chr1 88272118 88272426 -193921238 - AluJb SINE Alu -6 306 1 1217 176 74 85 chr1 88272433 88272786 -193920878 - L1MC5 LINE L1 -921 7040 6692 2728 192 132 64 chr1 88272909 88273215 -193920449 - L1MD2 LINE L1 -2 6357 6073 2142 82 0 0 chr1 88273215 88273482 -193920182 - AluY SINE Alu -44 267 1 2728 192 132 64 chr1 88273482 88273505 -193920159 - L1MD2 LINE L1 -286 6073 6053 2237 107 0 7 chr1 88273505 88273804 -193919860 - AluSq SINE Alu -16 297 1 2728 192 132 64 chr1 88273804 88273883 -193919781 - L1MD2 LINE L1 -306 6053 5981 1562 183 34 17 chr1 88273883 88274188 -193919476 + AluJo SINE Alu 10 310 -2 2728 192 132 64 chr1 88274188 88274475 -193919189 - L1MD2 LINE L1 -378 5981 5596 2246 123 0 0 chr1 88274475 88274777 -193918887 - AluSx SINE Alu -10 302 1 2728 192 132 64 chr1 88274777 88274926 -193918738 - L1MD2 LINE L1 -763 5596 5459 1322 247 91 80 chr1 88274926 88275529 -193918135 - LTR38 LTR ERV1 0 556 1 898 106 0 111 chr1 88275529 88275700 -193917964 - L1MC/D LINE L1 -780 5462 5274 2349 92 0 10 chr1 88275700 88276004 -193917660 - AluSx SINE Alu -11 301 1 1833 178 10 0 chr1 88276007 88276316 -193917348 - AluJb SINE Alu 0 312 1 898 106 0 111 chr1 88276316 88276348 -193917316 - L1MC/D LINE L1 -930 5312 5278 225 65 0 0 chr1 88276350 88276381 -193917283 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1899 132 20 34 chr1 88276383 88276678 -193916986 - AluSx SINE Alu -21 291 1 2302 109 0 6 chr1 88276690 88277002 -193916662 - AluSx SINE Alu -2 310 1 1503 199 95 46 chr1 88277003 88277506 -193916158 - L1MD3 LINE L1 -8 7987 7460 360 212 0 0 chr1 88277506 88277572 -193916092 + AluJ/FLAM SINE Alu 1 66 -236 882 179 7 20 chr1 88277572 88277723 -193915941 + AluJo/FRAM SINE Alu 140 288 -14 422 203 208 19 chr1 88277739 88277878 -193915786 - L1MC4a LINE L1 -513 7295 7184 2202 120 0 3 chr1 88277878 88278178 -193915486 - AluSx SINE Alu -13 299 1 422 203 208 19 chr1 88278178 88278250 -193915414 - L1MC4a LINE L1 -624 7184 7044 1312 177 118 0 chr1 88278252 88278530 -193915134 - AluJb SINE Alu 0 308 1 2030 94 7 14 chr1 88278541 88278816 -193914848 - AluSx SINE Alu -9 303 31 1647 241 84 80 chr1 88278816 88279035 -193914629 - L1MD3 LINE L1 -1406 6589 6372 2342 74 3 7 chr1 88279035 88279331 -193914333 - AluY SINE Alu -16 295 1 970 189 0 12 chr1 88279335 88279499 -193914165 - FRAM SINE Alu -4 162 1 1647 241 84 80 chr1 88279499 88280147 -193913517 - L1MD3 LINE L1 -1625 6370 5714 2078 225 115 20 chr1 88280184 88281021 -193912643 - L1MD3 LINE L1 -1254 4892 3977 586 218 62 5 chr1 88281022 88281215 -193912449 - MLT1C LTR MaLR 0 467 278 2138 105 47 39 chr1 88281219 88281580 -193912084 - THE1B LTR MaLR 0 364 1 690 126 5 9 chr1 88281703 88281839 -193911825 - THE1B-int LTR MaLR -175 1476 1275 2210 95 3 50 chr1 88281839 88282156 -193911508 - AluSq SINE Alu -11 302 1 2065 92 24 24 chr1 88282158 88282453 -193911211 - AluSx SINE Alu -17 295 1 184 308 143 22 chr1 88282623 88282714 -193910950 + L3 LINE CR1 1475 1576 -1 1025 136 24 18 chr1 88282731 88282900 -193910764 + FRAM SINE Alu 1 169 -7 630 138 107 75 chr1 88283401 88283560 -193910104 + AluJo SINE Alu 86 249 -63 186 43 0 0 chr1 88283562 88283585 -193910079 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1288 139 0 0 chr1 88283701 88283874 -193909790 - AluJb SINE Alu -11 301 129 962 186 0 6 chr1 88283885 88284046 -193909618 + AluJo SINE Alu 1 160 -152 1283 184 123 8 chr1 88284356 88284617 -193909047 - AluJo SINE Alu -9 303 13 966 219 0 0 chr1 88284831 88285000 -193908664 - FAM SINE Alu -6 169 1 1050 204 0 0 chr1 88285116 88285302 -193908362 - MER5A DNA MER1_type -1 188 3 418 234 156 78 chr1 88285302 88285425 -193908239 - MIR3 SINE MIR -57 151 17 1153 143 41 36 chr1 88286170 88286366 -193907298 - AluJb SINE Alu -9 303 107 2075 147 0 13 chr1 88286370 88286683 -193906981 - AluSx SINE Alu -3 309 1 991 174 12 0 chr1 88288395 88288562 -193905102 - AluJb SINE Alu -10 302 134 2383 90 3 0 chr1 88288562 88288862 -193904802 - AluSp SINE Alu -12 301 1 613 174 0 132 chr1 88289069 88289236 -193904428 + AluJo SINE Alu 1 145 -167 2351 106 0 3 chr1 88289237 88289549 -193904115 + AluSq SINE Alu 1 311 -2 741 256 6 12 chr1 88289549 88289721 -193903943 - MIR SINE MIR -71 191 21 2139 102 0 0 chr1 88289750 88290024 -193903640 - AluSq SINE Alu -39 274 1 1676 189 7 0 chr1 88290026 88290322 -193903342 - AluJb SINE Alu -14 298 1 182 206 0 0 chr1 88290323 88290357 -193903307 - MIR SINE MIR -227 35 2 25 0 0 0 chr1 88290547 88290572 -193903092 + AT_rich Low_complexity Low_complexity 1 25 0 489 279 137 0 chr1 88290786 88290947 -193902717 + MIR SINE MIR 9 191 -71 201 152 0 0 chr1 88291043 88291076 -193902588 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2310 112 0 0 chr1 88291292 88291597 -193902067 + AluSx SINE Alu 1 305 -7 766 285 28 90 chr1 88291633 88291831 -193901833 - L3 LINE CR1 -630 947 783 2217 96 7 16 chr1 88291831 88292134 -193901530 - AluSp SINE Alu -13 300 1 766 285 28 90 chr1 88292134 88292325 -193901339 - L3 LINE CR1 -794 783 582 1105 167 84 4 chr1 88292351 88292474 -193901190 + L1MA9 LINE L1 6029 6141 -171 191 36 36 0 chr1 88292474 88292502 -193901162 + (CA)n Simple_repeat Simple_repeat 2 30 0 1105 167 84 4 chr1 88292502 88292641 -193901023 + L1MA9 LINE L1 6141 6312 0 197 319 139 0 chr1 88292648 88292720 -193900944 - L3 LINE CR1 -1033 544 463 889 209 0 0 chr1 88292720 88292878 -193900786 + FRAM SINE Alu 1 158 -18 2397 95 0 0 chr1 88293276 88293581 -193900083 - AluSg SINE Alu -5 305 1 393 210 50 25 chr1 88293771 88293890 -193899774 + L1MB7 LINE L1 6054 6175 -9 1279 164 0 18 chr1 88293996 88294222 -193899442 - AluJo SINE Alu -6 306 85 1566 157 35 28 chr1 88294716 88295002 -193898662 + AluJo SINE Alu 1 288 -24 2031 112 6 56 chr1 88295423 88295744 -193897920 - AluSx SINE Alu -7 305 1 761 269 82 16 chr1 88296250 88296495 -193897169 + MIR SINE MIR 1 261 -1 1720 195 3 0 chr1 88296906 88297214 -193896450 - AluJo SINE Alu 0 309 1 2143 121 0 7 chr1 88297249 88297546 -193896118 - AluSx SINE Alu -17 295 1 675 116 89 0 chr1 88297556 88297668 -193895996 - AluSg/x SINE Alu -20 292 171 950 168 0 0 chr1 88297766 88297939 -193895725 + FRAM SINE Alu 1 172 0 1031 159 0 0 chr1 88298338 88298521 -193895143 + AluSg/x SINE Alu 125 307 0 255 344 16 49 chr1 88298737 88298859 -193894805 + MER5A DNA MER1_type 72 189 0 1898 157 0 28 chr1 88299097 88299415 -193894249 - AluJo SINE Alu -3 309 1 1691 140 0 103 chr1 88299577 88299898 -193893766 + AluJo SINE Alu 1 288 -24 2156 116 0 7 chr1 88299909 88300210 -193893454 - AluSx SINE Alu -13 299 1 876 266 76 39 chr1 88300358 88300993 -193892671 - L1M4 LINE L1 -1308 4838 4181 291 75 0 0 chr1 88301183 88301223 -193892441 - Alu SINE Alu -262 40 1 604 0 0 0 chr1 88301239 88301315 -193892349 - L1HS LINE L1 0 6155 6080 660 197 52 62 chr1 88301315 88301508 -193892156 - MLT1D LTR MaLR -314 191 1 851 176 15 0 chr1 88302068 88302199 -193891465 + FRAM SINE Alu 1 133 -43 264 30 0 0 chr1 88302211 88302244 -193891420 + (CAA)n Simple_repeat Simple_repeat 2 34 0 744 191 0 22 chr1 88302557 88302693 -193890971 + FLAM_A SINE Alu 1 133 0 2205 95 7 0 chr1 88303375 88303659 -193890005 + AluSx SINE Alu 15 300 -12 1499 235 41 9 chr1 88303662 88304007 -193889657 - MLT1F LTR MaLR -181 361 6 2280 115 0 3 chr1 88304465 88304777 -193888887 - AluSq SINE Alu -2 311 1 238 50 50 0 chr1 88305522 88305562 -193888102 + (TTG)n Simple_repeat Simple_repeat 3 44 0 1127 124 0 0 chr1 88305746 88305899 -193887765 - AluSx SINE Alu -159 153 1 491 232 145 63 chr1 88306277 88306402 -193887262 + MIR SINE MIR 4 154 -108 2112 129 0 7 chr1 88306402 88306704 -193886960 - AluSx SINE Alu -11 301 2 491 232 145 63 chr1 88306704 88306785 -193886879 + MIR SINE MIR 154 227 -35 565 252 0 0 chr1 88306866 88307009 -193886655 + L1M4 LINE L1 74 216 -6326 495 165 54 2 chr1 88307161 88307405 -193886259 + AluJb SINE Alu 1 307 -5 6772 164 14 11 chr1 88307611 88309983 -193883681 - L1PB1 LINE L1 -3 6148 3776 35 41 0 0 chr1 88310930 88310979 -193882685 + AT_rich Low_complexity Low_complexity 1 49 0 250 167 0 0 chr1 88311295 88311337 -193882327 + FRAM/FAM SINE Alu 47 88 -78 469 315 75 66 chr1 88311936 88312362 -193881302 + L1M4 LINE L1 244 673 -5972 364 294 14 115 chr1 88313199 88313417 -193880247 - MER91A DNA MER1_type 0 196 1 1857 166 3 10 chr1 88313840 88314141 -193879523 - AluJo SINE Alu -13 299 1 26 50 0 0 chr1 88315067 88315107 -193878557 + AT_rich Low_complexity Low_complexity 1 40 0 2242 129 0 0 chr1 88315331 88315642 -193878022 + AluSx SINE Alu 1 311 -1 593 244 69 0 chr1 88315895 88316026 -193877638 - MIR SINE MIR -121 141 2 249 286 86 35 chr1 88316228 88316415 -193877249 - MIR SINE MIR -15 247 1 809 158 216 4 chr1 88316785 88317040 -193876624 - Charlie5 DNA MER1_type 0 2624 7 794 293 8 24 chr1 88317050 88317303 -193876361 + MIR SINE MIR 14 262 0 257 310 101 8 chr1 88317814 88317943 -193875721 - L1ME3A LINE L1 -31 6139 5999 312 138 0 46 chr1 88317991 88318097 -193875567 - AluS SINE Alu 0 323 221 2040 135 0 0 chr1 88318105 88318413 -193875251 - AluSx SINE Alu 0 308 1 1381 233 93 28 chr1 88318453 88318884 -193874780 - L1ME3A LINE L1 -219 5951 5483 207 0 0 0 chr1 88318884 88318907 -193874757 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1381 233 93 28 chr1 88318907 88318968 -193874696 - L1ME3A LINE L1 -687 5483 5427 1927 150 7 7 chr1 88319038 88319338 -193874326 - AluJo SINE Alu -12 300 1 1711 189 34 0 chr1 88319402 88319698 -193873966 - AluJb SINE Alu -6 306 1 2191 101 9 25 chr1 88320188 88320506 -193873158 + AluSp SINE Alu 1 313 0 260 140 0 35 chr1 88321397 88321454 -193872210 + (TTTC)n Simple_repeat Simple_repeat 3 57 0 1576 167 65 14 chr1 88321456 88321750 -193871914 - AluJo SINE Alu -3 309 1 2082 107 27 7 chr1 88322207 88322506 -193871158 - AluSx SINE Alu -7 305 1 240 223 175 68 chr1 88323162 88323265 -193870399 - L2 LINE L2 -18 3295 3182 428 274 47 47 chr1 88323289 88323479 -193870185 + L1ME4a LINE L1 5515 5704 -417 1838 188 0 7 chr1 88323481 88323779 -193869885 + AluJo SINE Alu 1 296 -16 319 244 114 0 chr1 88323790 88323913 -193869751 + L1MC4 LINE L1 5649 6699 -1343 243 213 162 29 chr1 88323917 88324053 -193869611 + L1ME4a LINE L1 5773 5926 -195 1830 146 0 14 chr1 88324360 88324647 -193869017 + AluSx SINE Alu 1 283 -29 30 45 0 0 chr1 88325138 88325182 -193868482 + AT_rich Low_complexity Low_complexity 1 44 0 1618 148 31 9 chr1 88325621 88325939 -193867725 - L1MB7 LINE L1 0 6184 5860 656 126 0 29 chr1 88326167 88326270 -193867394 - FLAM_C SINE Alu -17 126 27 2234 231 12 0 chr1 88326626 88327272 -193866392 - L1 LINE L1 -2729 3417 2764 306 176 37 56 chr1 88327271 88327362 -193866302 - L1PBa LINE L1 -4004 2859 2769 * 198 0 0 0 chr1 88327362 88327384 -193866280 + (TATTG)n Simple_repeat Simple_repeat 2 23 0 306 176 37 56 chr1 88327384 88327400 -193866264 - L1PBa LINE L1 -4094 2769 2754 705 96 0 88 chr1 88327400 88327525 -193866139 - AluSq/x SINE Alu -199 114 1 1035 122 20 0 chr1 88327540 88327688 -193865976 + FRAM SINE Alu 1 146 -30 2042 121 21 0 chr1 88328079 88328368 -193865296 + AluSx SINE Alu 1 295 -17 1629 197 48 3 chr1 88328627 88328917 -193864747 - AluJb SINE Alu -9 303 1 2509 66 0 3 chr1 88330080 88330385 -193863279 - AluY SINE Alu -7 304 1 186 103 0 0 chr1 88330551 88330580 -193863084 + (T)n Simple_repeat Simple_repeat 1 29 0 2194 105 26 0 chr1 88330610 88330914 -193862750 - AluSx SINE Alu 0 312 1 1226 132 19 19 chr1 88331240 88331452 -193862212 - MER7A DNA MER2_type -124 222 13 251 281 7 93 chr1 88331469 88331608 -193862056 - L2 LINE L2 -976 2338 2212 1834 153 7 23 chr1 88332239 88332547 -193861117 - AluJb SINE Alu -2 310 8 571 228 107 28 chr1 88332668 88332902 -193860762 - MLT1D LTR MaLR -30 437 177 1265 117 21 5 chr1 88332920 88333108 -193860556 - AluSg/x SINE Alu -22 288 98 895 148 0 7 chr1 88335181 88335316 -193858348 + AluJo SINE Alu 1 134 -178 1858 105 97 0 chr1 88335336 88335632 -193858032 + AluSx SINE Alu 1 321 0 2218 108 0 3 chr1 88336136 88336431 -193857233 - AluSx SINE Alu -18 294 1 266 316 8 34 chr1 88337664 88337781 -193855883 + MIR SINE MIR 102 215 -47 188 196 0 18 chr1 88338556 88338612 -193855052 + CT-rich Low_complexity Low_complexity 1 55 0 444 189 290 0 chr1 88338716 88338879 -193854785 + L1MC4 LINE L1 6448 6660 -1377 2170 119 0 0 chr1 88338879 88339165 -193854499 + AluSx SINE Alu 3 288 -24 2154 122 0 0 chr1 88339183 88339471 -193854193 + AluSx SINE Alu 1 288 -24 1249 108 12 0 chr1 88339489 88339655 -193854009 + AluSg SINE Alu 1 168 -142 2105 108 0 0 chr1 88339703 88339980 -193853684 + AluSx SINE Alu 27 303 -9 330 339 38 31 chr1 88340059 88340348 -193853316 + L2 LINE L2 2384 2674 -640 2281 81 23 29 chr1 88341097 88341406 -193852258 + AluSq SINE Alu 1 307 -6 2191 121 0 0 chr1 88341412 88341702 -193851962 + AluSq SINE Alu 1 290 -23 1851 183 0 10 chr1 88342327 88342633 -193851031 + AluJb SINE Alu 1 303 -9 30 27 0 0 chr1 88342788 88342825 -193850839 + AT_rich Low_complexity Low_complexity 1 37 0 2133 99 0 14 chr1 88342923 88343233 -193850431 - AluSc SINE Alu 0 306 1 2172 105 20 0 chr1 88343704 88343998 -193849666 - AluSx SINE Alu -12 300 1 1028 194 86 13 chr1 88344196 88344346 -193849318 + MIR SINE MIR 12 186 -76 1886 143 3 13 chr1 88344346 88344646 -193849018 - AluJo SINE Alu -15 297 1 1028 194 86 13 chr1 88344646 88344727 -193848937 + MIR SINE MIR 186 260 -2 193 235 221 0 chr1 88344814 88344882 -193848782 + MER5A DNA MER1_type 1 83 -106 331 269 134 51 chr1 88344970 88345186 -193848478 + MIR SINE MIR 28 261 -1 2147 138 0 0 chr1 88345249 88345545 -193848119 - AluSx SINE Alu -16 296 1 275 297 35 48 chr1 88345789 88345934 -193847730 + MIR SINE MIR 59 201 -61 6335 69 16 52 chr1 88345951 88346941 -193846723 - SVA Other Other 0 1386 433 4729 74 16 136 chr1 88346958 88348092 -193845572 - SVA Other Other -520 866 1 2378 95 0 0 chr1 88348171 88348476 -193845188 + AluSx SINE Alu 1 305 -7 1921 160 0 7 chr1 88348927 88349221 -193844443 - AluJb SINE Alu -20 292 1 1748 180 3 3 chr1 88349270 88349570 -193844094 + AluJb SINE Alu 1 300 -12 383 266 115 0 chr1 88349730 88349843 -193843821 + FLAM_A SINE Alu 1 126 -7 29 47 0 0 chr1 88351316 88351359 -193842305 + AT_rich Low_complexity Low_complexity 1 43 0 401 332 0 61 chr1 88351526 88351722 -193841942 - MIR SINE MIR -57 205 22 675 145 46 30 chr1 88352618 88352749 -193840915 + AluJ SINE Alu 9 141 -171 38 0 0 20 chr1 88352769 88352801 -193840863 + AT_rich Low_complexity Low_complexity 1 33 -15 2261 96 3 0 chr1 88352801 88353093 -193840571 + AluSq SINE Alu 1 293 -20 38 0 0 20 chr1 88353093 88353109 -193840555 + AT_rich Low_complexity Low_complexity 33 48 0 1036 187 12 0 chr1 88353109 88353280 -193840384 + AluJ SINE Alu 132 304 -8 490 115 10 62 chr1 88353958 88354054 -193839610 - FRAM SINE Alu -14 162 72 2588 73 0 0 chr1 88355062 88355375 -193838289 + AluSq SINE Alu 1 313 0 267 222 222 44 chr1 88355925 88356060 -193837604 - MER44D DNA MER2_type -180 429 1 23 55 0 18 chr1 88356208 88356241 -193837423 + AT_rich Low_complexity Low_complexity 1 34 -20 2134 116 0 0 chr1 88356241 88356526 -193837138 + AluSx SINE Alu 1 285 -27 23 55 0 18 chr1 88356526 88356547 -193837117 + AT_rich Low_complexity Low_complexity 34 54 0 485 233 108 0 chr1 88356758 88356878 -193836786 - FLAM_A SINE Alu 0 133 1 2130 107 0 58 chr1 88356996 88357324 -193836340 - AluSg SINE Alu -1 309 1 2093 107 20 7 chr1 88357762 88358060 -193835604 - AluSx SINE Alu -10 302 1 1771 156 45 0 chr1 88358726 88359014 -193834650 - AluSx SINE Alu -1 311 11 784 212 72 7 chr1 88359171 88359405 -193834259 - MER33 DNA MER1_type 0 324 1 27 0 0 0 chr1 88360043 88360070 -193833594 + AT_rich Low_complexity Low_complexity 1 27 0 37 52 0 0 chr1 88361422 88361480 -193832184 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr1 88362167 88362188 -193831476 + AT_rich Low_complexity Low_complexity 1 21 0 303 173 0 0 chr1 88362611 88362663 -193831001 - MER105 DNA DNA -3 201 150 678 274 98 53 chr1 88362667 88363025 -193830639 + L2 LINE L2 1132 1505 -1809 1731 104 119 7 chr1 88363116 88363385 -193830279 - AluSg1 SINE Alu -10 299 1 399 266 133 12 chr1 88363388 88363561 -193830103 + L2 LINE L2 3118 3311 -2 288 246 50 131 chr1 88366777 88366976 -193826688 + MER5A DNA MER1_type 1 183 -6 934 226 71 17 chr1 88367462 88367701 -193825963 + MIR SINE MIR 2 253 -9 207 42 0 83 chr1 88368402 88368450 -193825214 + (TTTAA)n Simple_repeat Simple_repeat 4 47 0 1023 205 136 19 chr1 88369341 88369599 -193824065 + AluJo SINE Alu 1 288 -14 21 0 0 0 chr1 88369620 88369641 -193824023 + AT_rich Low_complexity Low_complexity 1 21 0 394 362 16 8 chr1 88370736 88370863 -193822801 + MIR SINE MIR 12 139 -123 1618 144 107 7 chr1 88371071 88371342 -193822322 + AluSx SINE Alu 1 298 -14 399 280 45 34 chr1 88372155 88372307 -193821357 + MIR3 SINE MIR 5 157 -78 292 186 174 0 chr1 88372724 88372810 -193820854 - L1MC4 LINE L1 0 8042 7942 1516 217 143 25 chr1 88373025 88373583 -193820081 - L1MC4 LINE L1 -952 7090 6467 338 274 0 0 chr1 88374882 88374966 -193818698 + MER94 DNA DNA 2 85 -49 624 212 0 0 chr1 88375037 88375150 -193818514 + FLAM_A SINE Alu 1 113 -29 22 0 0 0 chr1 88375451 88375473 -193818191 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 88375542 88375578 -193818086 + AT_rich Low_complexity Low_complexity 1 36 0 2093 123 7 3 chr1 88375653 88375954 -193817710 - AluSx SINE Alu -10 302 1 2044 114 36 0 chr1 88376025 88376306 -193817358 - AluSq SINE Alu -22 291 1 217 268 0 70 chr1 88376606 88376677 -193816987 - MIR3 SINE MIR -133 75 10 760 137 0 8 chr1 88376891 88377037 -193816627 - AluSg/x SINE Alu 0 314 170 23 33 0 0 chr1 88377456 88377486 -193816178 + AT_rich Low_complexity Low_complexity 1 30 0 330 137 0 96 chr1 88377537 88377610 -193816054 + AluJ/FRAM SINE Alu 226 291 -11 259 141 0 94 chr1 88378611 88378675 -193814989 - L1MC4 LINE L1 -123 7919 7862 1824 132 17 14 chr1 88378701 88378988 -193814676 + AluJb SINE Alu 3 290 -22 298 331 19 13 chr1 88378994 88379151 -193814513 - L1MC4 LINE L1 -285 7757 7600 23 33 0 0 chr1 88382820 88382850 -193810814 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 88384289 88384312 -193809352 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 88385550 88385572 -193808092 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 88388337 88388358 -193805306 + AT_rich Low_complexity Low_complexity 1 21 0 1796 119 0 14 chr1 88389088 88389365 -193804299 - AluSx SINE Alu -39 273 1 392 291 114 59 chr1 88390409 88390653 -193803011 + L2 LINE L2 3028 3290 -23 2285 103 3 3 chr1 88390653 88390965 -193802699 - AluSx SINE Alu 0 312 1 392 291 114 59 chr1 88390965 88390991 -193802673 + L2 LINE L2 3290 3313 0 1708 164 22 0 chr1 88391068 88391342 -193802322 - AluJb SINE Alu -30 282 3 859 121 8 0 chr1 88391942 88392066 -193801598 - AluJb SINE Alu -187 125 1 681 170 36 0 chr1 88392582 88392694 -193800970 - FLAM_A SINE Alu -20 122 7 1879 111 96 0 chr1 88393033 88393303 -193800361 + AluSx SINE Alu 1 296 -16 250 248 168 20 chr1 88393305 88393406 -193800258 + MIR SINE MIR 25 140 -68 259 263 70 0 chr1 88393525 88393582 -193800082 - MER45C DNA AcHobo -460 493 433 560 241 108 35 chr1 88393724 88393927 -193799737 - MER45C DNA AcHobo -642 311 94 1131 188 12 55 chr1 88393928 88394062 -193799602 + AluJb SINE Alu 1 120 -192 2249 108 0 7 chr1 88394062 88394368 -193799296 + AluSx SINE Alu 1 304 -8 1131 188 12 55 chr1 88394368 88394488 -193799176 + AluJb SINE Alu 120 244 -68 474 231 48 0 chr1 88394491 88394595 -193799069 - MER45C DNA AcHobo -844 109 1 21 0 0 0 chr1 88395098 88395119 -193798545 + AT_rich Low_complexity Low_complexity 1 21 0 2192 90 7 0 chr1 88395210 88395489 -193798175 - AluSp SINE Alu -24 289 9 2080 128 3 0 chr1 88395935 88396247 -193797417 + AluSq SINE Alu 1 313 0 3049 214 52 30 chr1 88396519 88397268 -193796396 + L1M4 LINE L1 3502 4272 -1874 2307 96 7 0 chr1 88397268 88397571 -193796093 + AluSg SINE Alu 1 305 -5 3049 214 52 30 chr1 88397571 88397621 -193796043 + L1M4 LINE L1 4272 4319 -1827 2104 88 0 4 chr1 88397825 88398099 -193795565 - AluSx SINE Alu -39 273 1 263 342 109 16 chr1 88398973 88399166 -193794498 + L2 LINE L2 2825 3035 -237 384 19 38 0 chr1 88399282 88399335 -193794329 - AluSc SINE Alu -2 297 243 1578 59 0 0 chr1 88399335 88399521 -193794143 - AluSc SINE Alu -123 186 1 392 291 114 59 chr1 88399927 88400171 -193793493 + L2 LINE L2 3028 3290 -23 2313 99 3 3 chr1 88400171 88400483 -193793181 - AluSx SINE Alu 0 312 1 392 291 114 59 chr1 88400483 88400509 -193793155 + L2 LINE L2 3290 3313 0 1731 161 22 0 chr1 88400586 88400860 -193792804 - AluJb SINE Alu -30 282 3 859 121 8 0 chr1 88401460 88401584 -193792080 - AluJb SINE Alu -187 125 1 681 170 36 0 chr1 88402100 88402212 -193791452 - FLAM_A SINE Alu -20 122 7 255 232 152 71 chr1 88402540 88402552 -193791112 + MIR SINE MIR 20 30 -178 1884 114 95 0 chr1 88402552 88402825 -193790839 + AluSx SINE Alu 1 299 -13 255 232 152 71 chr1 88402825 88402924 -193790740 + MIR SINE MIR 30 140 -68 494 300 64 67 chr1 88403024 88403444 -193790220 - MER45C DNA AcHobo -441 512 94 1131 188 12 55 chr1 88403445 88403579 -193790085 + AluJb SINE Alu 1 120 -192 2376 90 0 3 chr1 88403579 88403878 -193789786 + AluSx SINE Alu 1 298 -14 1131 188 12 55 chr1 88403878 88403998 -193789666 + AluJb SINE Alu 120 244 -68 474 231 48 0 chr1 88404001 88404105 -193789559 - MER45C DNA AcHobo -844 109 1 21 0 0 0 chr1 88404609 88404630 -193789034 + AT_rich Low_complexity Low_complexity 1 21 0 2385 78 16 0 chr1 88404699 88405006 -193788658 - AluSp SINE Alu -1 312 1 244 306 135 0 chr1 88405145 88405256 -193788408 + L3b LINE CR1 1271 1396 -187 674 159 94 7 chr1 88405500 88405638 -193788026 - MIR SINE MIR -61 201 52 2296 89 7 0 chr1 88405664 88405955 -193787709 + AluSg SINE Alu 1 293 -17 2438 39 3 80 chr1 88406448 88406784 -193786880 - AluY SINE Alu -1 310 1 374 349 116 56 chr1 88407193 88407643 -193786021 - L2 LINE L2 -407 2907 2431 224 217 133 24 chr1 88407702 88407785 -193785879 - L2 LINE L2 -1262 2052 1961 299 229 0 57 chr1 88407973 88408078 -193785586 + GA-rich Low_complexity Low_complexity 2 100 0 253 298 0 24 chr1 88408413 88408497 -193785167 + CT-rich Low_complexity Low_complexity 1 82 0 1333 138 30 39 chr1 88408844 88409075 -193784589 + AluJo SINE Alu 1 229 -83 21 82 0 0 chr1 88409315 88409364 -193784300 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr1 88409464 88409490 -193784174 + AT_rich Low_complexity Low_complexity 1 26 0 1809 154 7 10 chr1 88409566 88409864 -193783800 - AluJb SINE Alu -14 298 2 209 351 0 13 chr1 88409949 88410026 -193783638 - MIR SINE MIR 0 262 187 566 217 30 114 chr1 88410088 88410254 -193783410 - MIR SINE MIR -97 165 14 390 154 0 0 chr1 88410257 88410335 -193783329 + (CA)n Simple_repeat Simple_repeat 2 79 0 22 70 0 0 chr1 88410516 88410559 -193783105 + AT_rich Low_complexity Low_complexity 1 43 0 1482 128 206 0 chr1 88410607 88410850 -193782814 - AluSx SINE Alu -19 293 1 41 21 0 0 chr1 88411997 88412045 -193781619 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 88412551 88412573 -193781091 + AT_rich Low_complexity Low_complexity 1 22 0 2181 138 0 0 chr1 88412931 88413243 -193780421 + AluJb SINE Alu 1 312 0 2072 134 0 3 chr1 88413515 88413814 -193779850 - AluSx SINE Alu -14 298 1 618 138 107 75 chr1 88413998 88414157 -193779507 - AluJo SINE Alu -63 249 86 1000 137 24 18 chr1 88414658 88414826 -193778838 - FRAM SINE Alu -8 168 1 181 308 143 22 chr1 88414843 88414934 -193778730 - L3 LINE CR1 -1 1576 1475 2182 92 20 14 chr1 88415104 88415399 -193778265 + AluSx SINE Alu 1 297 -15 2115 99 0 55 chr1 88415406 88415718 -193777946 + AluSq SINE Alu 7 301 -12 734 140 15 22 chr1 88415718 88415854 -193777810 + THE1A-int LTR MaLR 1275 1409 -171 2443 97 6 22 chr1 88415977 88416338 -193777326 + THE1A LTR MaLR 1 355 0 1765 156 48 3 chr1 88416614 88416903 -193776761 - AluJb SINE Alu -8 304 3 23 0 0 0 chr1 88418756 88418779 -193774885 + AT_rich Low_complexity Low_complexity 1 23 0 44 46 0 0 chr1 88419252 88419317 -193774347 + AT_rich Low_complexity Low_complexity 1 65 0 278 260 73 0 chr1 88419495 88419618 -193774046 - L1MEc LINE L1 -3449 2766 2635 2325 68 3 7 chr1 88419632 88419958 -193773706 - AluY SINE Alu 0 311 1 1641 202 3 0 chr1 88419982 88420274 -193773390 - AluJo SINE Alu -19 293 1 640 232 18 81 chr1 88420275 88420428 -193773236 - L1MEc LINE L1 -3819 2396 2314 2468 66 7 0 chr1 88420428 88420729 -193772935 - AluSq SINE Alu -10 303 1 640 232 18 81 chr1 88420729 88420907 -193772757 - L1MEc LINE L1 -3901 2314 2126 * 5333 173 38 55 chr1 88420875 88421879 -193771785 - L1MC1 LINE L1 -11 6391 5372 2290 98 0 0 chr1 88421879 88422174 -193771490 - AluSx SINE Alu -17 295 1 5333 173 38 55 chr1 88422174 88423154 -193770510 - L1MC1 LINE L1 -1030 5372 4377 2017 102 46 75 chr1 88423154 88423211 -193770453 - MER46B DNA MER2_type -2495 236 179 2399 75 7 0 chr1 88423211 88423505 -193770159 - AluSg SINE Alu -14 296 1 2017 102 46 75 chr1 88423505 88423535 -193770129 - MER46B DNA MER2_type -2552 179 150 237 65 0 0 chr1 88423535 88423566 -193770098 + (TA)n Simple_repeat Simple_repeat 2 32 0 2017 102 46 75 chr1 88423566 88423700 -193769964 - MER46B DNA MER2_type -2581 150 151 2324 101 0 0 chr1 88423700 88423998 -193769666 - AluSq SINE Alu -15 298 1 2017 102 46 75 chr1 88423998 88424146 -193769518 - MER46B DNA MER2_type -2579 152 1 5333 173 38 55 chr1 88424146 88424167 -193769497 - L1MC1 LINE L1 -2025 4377 4408 1620 200 3 17 chr1 88424167 88424467 -193769197 + AluJo SINE Alu 1 296 -16 5333 173 38 55 chr1 88424467 88424537 -193769127 - L1MC1 LINE L1 -1993 4409 4339 2080 103 11 0 chr1 88424537 88424818 -193768846 - AluSg SINE Alu -7 303 20 859 243 80 13 chr1 88424933 88425233 -193768431 - L1MC1 LINE L1 -2325 3890 3571 2079 128 3 0 chr1 88425504 88425816 -193767848 - AluSq SINE Alu 0 313 1 2391 81 3 0 chr1 88426263 88426560 -193767104 + AluSp SINE Alu 9 306 -7 1799 151 18 7 chr1 88426584 88426869 -193766795 + AluJo SINE Alu 5 292 -20 811 111 0 0 chr1 88426877 88426985 -193766679 - AluJo/FLAM SINE Alu -201 111 4 24 67 0 0 chr1 88427251 88427296 -193766368 + AT_rich Low_complexity Low_complexity 1 45 0 377 289 19 0 chr1 88427879 88427983 -193765681 - MIR SINE MIR -10 252 147 1662 159 36 13 chr1 88428007 88428308 -193765356 + AluJo SINE Alu 1 308 -4 31 26 0 0 chr1 88428389 88428427 -193765237 + AT_rich Low_complexity Low_complexity 1 38 0 373 277 44 22 chr1 88428551 88428688 -193764976 + MIR SINE MIR 14 153 -109 415 330 71 7 chr1 88428700 88428994 -193764670 + L2 LINE L2 1909 2221 -1093 * 462 281 124 73 chr1 88428983 88429353 -193764311 + L2 LINE L2 2824 3212 -60 1222 147 21 5 chr1 88429354 88429545 -193764119 - AluJo SINE Alu -118 194 1 2206 97 10 3 chr1 88429684 88429972 -193763692 - AluSc SINE Alu -19 290 1 430 226 32 11 chr1 88429973 88430066 -193763598 - L2 LINE L2 -13 3300 3206 23 0 0 0 chr1 88430368 88430391 -193763273 + AT_rich Low_complexity Low_complexity 1 23 0 295 227 23 34 chr1 88430562 88430650 -193763014 + L1MA10 LINE L1 6247 6333 -1 2082 147 0 0 chr1 88430662 88430968 -193762696 + AluSx SINE Alu 3 308 -4 1319 154 14 5 chr1 88431020 88431228 -193762436 - AluJb SINE Alu -20 292 83 377 208 21 10 chr1 88432233 88432329 -193761335 - L1MC5 LINE L1 -32 7929 7833 213 288 82 48 chr1 88432829 88432975 -193760689 - L2 LINE L2 -9 3304 3154 597 209 0 26 chr1 88433059 88433174 -193760490 + FLAM_A SINE Alu 13 124 -18 1006 189 166 16 chr1 88433474 88433781 -193759883 - Charlie1 DNA MER1_type -66 2695 2343 319 275 29 0 chr1 88433779 88433848 -193759816 - Charlie1 DNA MER1_type -2690 71 1 * 259 347 40 16 chr1 88434631 88434755 -193758909 - L2 LINE L2 -211 3061 2935 472 254 18 0 chr1 88435144 88435254 -193758410 - L2 LINE L2 -2 3311 3200 217 132 0 0 chr1 88435254 88435292 -193758372 + (T)n Simple_repeat Simple_repeat 1 38 0 17993 31 3 18 chr1 88435293 88438215 -193755449 - L1PA4 LINE L1 -3 6152 3257 2037 114 24 7 chr1 88438218 88438507 -193755157 - AluSg SINE Alu -16 294 1 341 264 104 9 chr1 88438661 88438767 -193754897 - L2 LINE L2 -849 2465 2350 1915 144 18 0 chr1 88438793 88439111 -193754553 - AluSx SINE Alu 0 323 1 2044 121 0 14 chr1 88439130 88439427 -193754237 - AluSx SINE Alu -19 293 1 2521 80 0 3 chr1 88439664 88439976 -193753688 + AluY SINE Alu 1 311 0 2128 107 3 3 chr1 88440005 88440296 -193753368 + AluSx SINE Alu 11 301 -11 1590 150 142 0 chr1 88440306 88440559 -193753105 + AluJb SINE Alu 1 289 -13 1147 68 0 0 chr1 88440755 88440887 -193752777 + AluSq/x SINE Alu 2 133 -180 1980 138 24 0 chr1 88440887 88441185 -193752479 + AluSg SINE Alu 1 305 -5 274 358 49 41 chr1 88441290 88441413 -193752251 + L2 LINE L2 3147 3270 -2 21 0 0 0 chr1 88441512 88441533 -193752131 + AT_rich Low_complexity Low_complexity 1 21 0 2074 148 0 0 chr1 88441844 88442142 -193751522 + AluJo SINE Alu 1 298 -14 221 71 71 0 chr1 88442486 88442528 -193751136 + (TAATG)n Simple_repeat Simple_repeat 2 46 0 440 219 25 143 chr1 88442581 88442672 -193750992 - Charlie8 DNA MER1_type -2156 261 204 879 71 8 39 chr1 88442672 88442799 -193750865 + L1PB3 LINE L1 6030 6152 -2 440 219 25 143 chr1 88442799 88442903 -193750761 - Charlie8 DNA MER1_type -2213 204 89 1946 151 0 17 chr1 88442922 88443221 -193750443 - AluJb SINE Alu -18 294 1 243 114 0 0 chr1 88443232 88443276 -193750388 + (T)n Simple_repeat Simple_repeat 1 44 0 262 188 0 0 chr1 88443670 88443718 -193749946 + L1ME4a LINE L1 5957 6004 -117 210 71 0 0 chr1 88446391 88446419 -193747245 + (CCG)n Simple_repeat Simple_repeat 1 28 0 781 90 8 30 chr1 88447011 88447145 -193746519 + (GGAGAA)n Simple_repeat Simple_repeat 5 135 0 2037 134 0 10 chr1 88447498 88447797 -193745867 + AluSx SINE Alu 1 296 -16 2074 93 0 24 chr1 88447797 88448087 -193745577 + AluSq SINE Alu 1 283 -30 412 335 30 5 chr1 88448315 88448515 -193745149 + L2 LINE L2 2856 3060 -212 430 105 0 0 chr1 88448684 88448741 -193744923 - Alu SINE Alu -260 58 2 2256 125 0 7 chr1 88448799 88449104 -193744560 + AluSx SINE Alu 1 303 -9 1438 253 104 70 chr1 88449244 88449719 -193743945 - L2 LINE L2 0 3313 2855 2190 119 0 0 chr1 88449719 88450013 -193743651 - AluSx SINE Alu -18 294 1 1438 253 104 70 chr1 88450013 88450033 -193743631 - L2 LINE L2 -458 2855 2837 1634 158 8 4 chr1 88450033 88450292 -193743372 - AluJo SINE Alu -52 260 1 1438 253 104 70 chr1 88450292 88450770 -193742894 - L2 LINE L2 -476 2837 2311 21 86 0 12 chr1 88450867 88450887 -193742777 + AT_rich Low_complexity Low_complexity 1 20 -60 1792 104 8 0 chr1 88450887 88451128 -193742536 + AluSx SINE Alu 1 243 -69 21 86 0 12 chr1 88451128 88451188 -193742476 + AT_rich Low_complexity Low_complexity 20 80 0 2000 110 3 28 chr1 88451409 88451699 -193741965 + MER1B DNA MER1_type 57 339 0 1719 159 33 13 chr1 88451835 88452137 -193741527 + AluJo SINE Alu 3 310 -2 1477 191 129 106 chr1 88452185 88452395 -193741269 + MLT1F LTR MaLR 3 207 -335 771 156 7 52 chr1 88452395 88452530 -193741134 - FLAM_C SINE Alu 0 133 5 1477 191 129 106 chr1 88452530 88452837 -193740827 + MLT1F LTR MaLR 207 532 -10 2104 120 3 7 chr1 88452924 88453232 -193740432 - AluSx SINE Alu -5 307 1 28 86 0 0 chr1 88454108 88454178 -193739486 + AT_rich Low_complexity Low_complexity 1 70 0 2223 117 0 0 chr1 88454295 88454594 -193739070 - AluSx SINE Alu -13 299 1 25 49 0 33 chr1 88454800 88454815 -193738849 + AT_rich Low_complexity Low_complexity 1 15 -44 2519 78 0 0 chr1 88454815 88455122 -193738542 - AluSq SINE Alu -6 307 1 25 49 0 33 chr1 88455122 88455167 -193738497 + AT_rich Low_complexity Low_complexity 15 59 0 2549 75 0 0 chr1 88456430 88456738 -193736926 - AluSq SINE Alu -5 308 1 186 133 0 0 chr1 88457486 88457516 -193736148 + (CCA)n Simple_repeat Simple_repeat 1 30 0 2136 92 13 7 chr1 88458434 88458739 -193734925 - AluY SINE Alu -4 307 1 315 0 0 0 chr1 88458897 88458932 -193734732 + (TG)n Simple_repeat Simple_repeat 2 36 0 406 260 20 7 chr1 88509399 88509536 -193684128 + L1ME1 LINE L1 6021 6163 -1 1412 104 0 0 chr1 88510522 88510705 -193682959 - AluSg SINE Alu -127 183 1 23 0 0 0 chr1 88511088 88511111 -193682553 + AT_rich Low_complexity Low_complexity 1 23 0 2259 106 3 0 chr1 88512264 88512565 -193681099 - AluSq SINE Alu -11 302 1 51 94 0 0 chr1 88512626 88512775 -193680889 + AT_rich Low_complexity Low_complexity 1 149 0 2196 116 0 3 chr1 88512932 88513243 -193680421 - AluSg SINE Alu 0 310 1 334 146 0 0 chr1 88513309 88513357 -193680307 + Alu SINE Alu 1 48 -254 1834 70 4 8 chr1 88513458 88513699 -193679965 + AluSp SINE Alu 65 304 -9 196 286 18 0 chr1 88514597 88514653 -193679011 - MIR SINE MIR -76 186 130 28 79 0 0 chr1 88514883 88514946 -193678718 + AT_rich Low_complexity Low_complexity 1 63 0 2043 99 49 0 chr1 88514991 88515275 -193678389 - AluSx SINE Alu -14 298 1 2037 127 0 7 chr1 88515477 88515768 -193677896 - AluSx SINE Alu -23 289 1 294 326 90 68 chr1 88515800 88516110 -193677554 + L2 LINE L2 2944 3260 -12 214 83 0 62 chr1 88516284 88516332 -193677332 + (TTTTC)n Simple_repeat Simple_repeat 2 46 0 2301 100 10 0 chr1 88516367 88516716 -193676948 - AluSp SINE Alu 0 352 1 31 26 0 0 chr1 88518148 88518186 -193675478 + AT_rich Low_complexity Low_complexity 1 38 0 2903 145 60 20 chr1 88518365 88518917 -193674747 - L1MB7 LINE L1 -15 6169 5596 1890 145 7 16 chr1 88519604 88519907 -193673757 + AluJb SINE Alu 1 300 -12 255 143 0 95 chr1 88519931 88519994 -193673670 + Charlie8 DNA MER1_type 37 93 -2324 274 316 158 18 chr1 88520564 88520678 -193672986 - MIR3 SINE MIR -3 205 76 2042 113 7 14 chr1 88520738 88521030 -193672634 + AluSq SINE Alu 1 290 -23 772 174 0 38 chr1 88521144 88521276 -193672388 + FLAM_C SINE Alu 1 127 -6 282 254 28 0 chr1 88521623 88521694 -193671970 + GA-rich Low_complexity Low_complexity 4 76 0 3192 26 16 0 chr1 88521856 88522237 -193671427 - L1PA5 LINE L1 -6 6148 5762 1142 143 54 15 chr1 88522240 88522443 -193671221 - AluJb SINE Alu -16 296 86 1341 197 56 0 chr1 88522574 88522843 -193670821 + AluJo SINE Alu 1 284 -28 226 148 16 33 chr1 88522959 88523020 -193670644 + (TATAA)n Simple_repeat Simple_repeat 1 60 0 2164 90 0 3 chr1 88523039 88523368 -193670296 - AluY SINE Alu 0 328 1 2038 113 0 0 chr1 88523492 88523775 -193669889 + AluSx SINE Alu 15 297 -15 875 171 0 0 chr1 88524646 88524786 -193668878 - AluJo SINE Alu -37 275 136 32 0 0 0 chr1 88524977 88525009 -193668655 + AT_rich Low_complexity Low_complexity 1 32 0 1090 175 0 0 chr1 88525176 88525359 -193668305 - AluJo SINE Alu -18 294 112 551 181 0 0 chr1 88525359 88525453 -193668211 - AluJo SINE Alu -166 146 53 1630 199 3 0 chr1 88525478 88525764 -193667900 + AluJo SINE Alu 15 301 -11 387 158 12 0 chr1 88525990 88526072 -193667592 - L1MA8 LINE L1 0 6291 6209 2239 106 0 22 chr1 88526101 88526421 -193667243 + AluSp SINE Alu 1 313 0 313 321 37 27 chr1 88526541 88526698 -193666966 - MIR SINE MIR -58 150 16 206 348 157 0 chr1 88527229 88527318 -193666346 - L2 LINE L2 -12 3260 3158 541 161 0 0 chr1 88527324 88527411 -193666253 - AluSc SINE Alu -16 293 207 3243 149 49 5 chr1 88527434 88528004 -193665660 - L1PB4 LINE L1 0 6156 5562 630 280 128 60 chr1 88528037 88528405 -193665259 - L2 LINE L2 -2 3311 2919 818 111 8 0 chr1 88528535 88528652 -193665012 - AluSx SINE Alu -8 304 187 439 86 14 14 chr1 88528652 88528722 -193664942 - AluSx SINE Alu -161 151 82 1039 182 91 0 chr1 88528728 88528937 -193664727 - L1PB4 LINE L1 -138 6018 5791 327 176 0 0 chr1 88528938 88528989 -193664675 - Alu SINE Alu -251 51 1 227 204 0 0 chr1 88529338 88529387 -193664277 + A-rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr1 88529525 88529555 -193664109 + AT_rich Low_complexity Low_complexity 1 30 0 1828 161 3 7 chr1 88529584 88529876 -193663788 + AluJo SINE Alu 1 291 -21 754 204 8 8 chr1 88529967 88530099 -193663565 - FLAM_C SINE Alu -11 132 1 358 202 32 21 chr1 88530838 88530932 -193662732 + LTR30 LTR ERV1 549 643 -79 292 217 17 0 chr1 88531011 88531071 -193662593 + MER116 DNA Mariner 1 61 -19 362 297 40 11 chr1 88531114 88531289 -193662375 + MER112 DNA MER1_type 74 253 -7 21 0 0 0 chr1 88531857 88531878 -193661786 + AT_rich Low_complexity Low_complexity 1 21 0 1972 151 10 6 chr1 88531884 88532195 -193661469 + AluJb SINE Alu 1 312 0 21 71 0 0 chr1 88532200 88532242 -193661422 + AT_rich Low_complexity Low_complexity 1 42 0 2139 121 0 13 chr1 88532323 88532621 -193661043 + AluSx SINE Alu 1 294 -18 25 51 0 0 chr1 88533002 88533041 -193660623 + AT_rich Low_complexity Low_complexity 1 39 0 2243 100 3 0 chr1 88533043 88533334 -193660330 + AluSp SINE Alu 1 292 -21 245 196 0 0 chr1 88533337 88533393 -193660271 + L1MC4 LINE L1 6648 6703 -1339 366 23 0 0 chr1 88533399 88533442 -193660222 + (GA)n Simple_repeat Simple_repeat 2 44 0 729 152 0 9 chr1 88533442 88533554 -193660110 - FLAM_C SINE Alu -31 112 2 314 273 176 16 chr1 88534645 88534832 -193658832 - MERVL LTR ERVL -1662 3823 3607 594 358 22 0 chr1 88534904 88535133 -193658531 - MERVL LTR ERVL -2338 3426 3193 582 229 222 0 chr1 88535349 88535502 -193658162 - MER5A DNA MER1_type 0 189 3 1166 162 0 50 chr1 88537272 88537494 -193656170 + AluJo SINE Alu 85 295 -17 21 36 0 0 chr1 88537550 88537578 -193656086 + AT_rich Low_complexity Low_complexity 1 28 0 2249 108 0 0 chr1 88538541 88538838 -193654826 + AluSg SINE Alu 5 301 -9 189 321 0 0 chr1 88539162 88539218 -193654446 + MIR SINE MIR 186 241 -21 262 272 117 43 chr1 88540159 88540321 -193653343 + LTR33 LTR ERVL 14 187 -334 738 279 114 55 chr1 88540326 88540887 -193652777 - MER115 DNA AcHobo -14 679 61 2366 100 6 0 chr1 88541071 88541382 -193652282 + AluSq SINE Alu 1 313 0 260 273 13 13 chr1 88541440 88541517 -193652147 + LTR33 LTR ERVL 445 521 0 984 114 8 0 chr1 88542217 88542348 -193651316 + FLAM_C SINE Alu 1 132 -11 266 244 81 12 chr1 88542389 88542475 -193651189 + Charlie1 DNA MER1_type 85 176 -2585 636 223 133 0 chr1 88542479 88542645 -193651019 - MER63A DNA MER1_type -21 189 2 466 248 110 9 chr1 88542698 88542807 -193650857 - FLAM_A SINE Alu -13 120 1 186 43 0 0 chr1 88542819 88542842 -193650822 + (TG)n Simple_repeat Simple_repeat 2 24 0 1742 132 0 59 chr1 88542842 88543131 -193650533 - AluJb SINE Alu -40 272 1 1846 108 93 0 chr1 88543156 88543434 -193650230 - AluSg SINE Alu -6 304 1 317 175 53 0 chr1 88543437 88543494 -193650170 + Charlie1 DNA MER1_type 2701 2760 -1 26 0 0 0 chr1 88543541 88543567 -193650097 + AT_rich Low_complexity Low_complexity 1 26 0 2353 55 28 0 chr1 88545151 88545440 -193648224 - AluSx SINE Alu -15 297 1 197 306 140 59 chr1 88546235 88546506 -193647158 - L2 LINE L2 -1894 1420 1128 330 323 40 81 chr1 88546744 88547066 -193646598 - L1M2 LINE L1 -5765 1084 776 207 0 0 0 chr1 88547235 88547258 -193646406 + (CCGCG)n Simple_repeat Simple_repeat 4 26 0 438 297 113 10 chr1 88548471 88548666 -193644998 + MIR SINE MIR 47 261 -1 207 343 50 57 chr1 88548654 88548794 -193644870 - MIR SINE MIR -99 163 25 * 248 222 19 0 chr1 88548863 88548917 -193644747 + Tigger5 DNA MER2_type 1 55 -2268 542 167 0 0 chr1 88548972 88549062 -193644602 + Tigger5 DNA MER2_type 2234 2323 0 543 237 86 32 chr1 88549084 88549270 -193644394 - MIR SINE MIR -26 236 41 1559 213 24 17 chr1 88549288 88549584 -193644080 - AluJo SINE Alu 0 302 5 1904 109 65 17 chr1 88550020 88550313 -193643351 - AluSx SINE Alu -5 307 1 252 304 186 0 chr1 88550591 88550693 -193642971 - MIR SINE MIR -116 146 26 2243 109 3 7 chr1 88550759 88551063 -193642601 - AluSx SINE Alu -9 303 1 2411 82 0 3 chr1 88551495 88551799 -193641865 - AluY SINE Alu -8 303 1 225 204 19 0 chr1 88552074 88552128 -193641536 + L1M4 LINE L1 3306 3360 -2786 2253 90 21 0 chr1 88552371 88552659 -193641005 - AluSx SINE Alu -17 295 2 348 164 129 43 chr1 88552695 88552811 -193640853 + L2 LINE L2 1669 1794 -1520 826 236 267 23 chr1 88552827 88553311 -193640353 + L2 LINE L2 2719 3313 0 526 105 105 0 chr1 88553481 88553576 -193640088 - L1MA9 LINE L1 -25 6287 6183 549 187 32 32 chr1 88554011 88554134 -193639530 + MER90 LTR ERV1 3 125 -450 1007 199 125 12 chr1 88554141 88554397 -193639267 + MER90 LTR ERV1 330 614 0 1321 146 24 90 chr1 88554515 88554803 -193638861 + AluJo SINE Alu 26 294 -18 1414 183 108 42 chr1 88555888 88556221 -193637443 - MLT1A1 LTR MaLR -7 358 4 550 271 101 32 chr1 88556788 88557035 -193636629 + L2 LINE L2 2918 3181 -91 1984 117 17 7 chr1 88557060 88557358 -193636306 + AluJb SINE Alu 1 301 -11 273 214 97 39 chr1 88557360 88557463 -193636201 - L1MC5 LINE L1 -44 7917 7809 505 233 133 17 chr1 88557474 88557654 -193636010 - L1ME3A LINE L1 -5 6165 5965 670 224 70 17 chr1 88557730 88557971 -193635693 - L1MC5 LINE L1 -433 7528 7275 494 152 33 0 chr1 88558258 88558350 -193635314 - L1MA4A LINE L1 -7 6296 6202 503 217 42 8 chr1 88558589 88558709 -193634955 - L2 LINE L2 0 3313 3190 637 241 43 0 chr1 88559021 88559208 -193634456 + MIR SINE MIR 68 262 0 252 311 68 39 chr1 88559310 88559413 -193634251 - L2 LINE L2 -19 3253 3148 229 139 347 14 chr1 88559498 88559570 -193634094 - MER103 DNA DNA -3 163 68 389 226 116 52 chr1 88559930 88560085 -193633579 - MER5A DNA MER1_type 0 189 25 1647 131 27 98 chr1 88560322 88560658 -193633006 + AluJb SINE Alu 1 312 0 1519 188 0 0 chr1 88561071 88561310 -193632354 - AluJo SINE Alu -73 239 1 258 32 0 0 chr1 88561690 88561721 -193631943 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1201 132 0 0 chr1 88562354 88562536 -193631128 - AluSg/x SINE Alu 0 310 129 1639 109 0 0 chr1 88562572 88562782 -193630882 - AluSx SINE Alu -102 210 1 1726 151 35 32 chr1 88563359 88563670 -193629994 - AluJb SINE Alu 0 312 1 239 304 96 17 chr1 88563759 88563874 -193629790 - MIR SINE MIR -65 143 20 538 220 8 8 chr1 88563883 88564001 -193629663 - MER20B DNA MER1_type -1 782 665 2190 111 26 7 chr1 88564083 88564390 -193629274 + AluSq SINE Alu 1 313 0 2336 98 3 25 chr1 88564468 88564784 -193628880 + AluSx SINE Alu 1 309 -3 1328 282 74 35 chr1 88564852 88565341 -193628323 - MER20B DNA MER1_type -256 527 20 999 199 5 63 chr1 88565537 88565608 -193628056 - AluJo SINE Alu -23 289 215 2166 126 3 7 chr1 88565608 88565910 -193627754 - AluSx SINE Alu -11 301 1 999 199 5 63 chr1 88565910 88566059 -193627605 - AluJo SINE Alu -97 215 82 6417 104 20 0 chr1 88566118 88567900 -193625764 + L1PA13 LINE L1 4330 6149 -14 309 198 180 18 chr1 88568140 88568251 -193625413 + MIR SINE MIR 124 252 -10 2045 146 0 3 chr1 88568306 88568615 -193625049 - AluSg SINE Alu -2 308 1 273 264 14 0 chr1 88569416 88569488 -193624176 + MER94 DNA DNA 28 100 -34 2260 107 13 0 chr1 88570340 88570638 -193623026 - AluSx SINE Alu -10 302 1 35 24 0 0 chr1 88572133 88572175 -193621489 + AT_rich Low_complexity Low_complexity 1 42 0 572 192 108 25 chr1 88572352 88572586 -193621078 - FLAM_A SINE Alu 0 246 3 372 306 36 2 chr1 88572646 88572763 -193620901 + MIR SINE MIR 37 154 -70 514 327 19 5 chr1 88572854 88573056 -193620608 + MIR SINE MIR 2 207 -55 2339 99 0 16 chr1 88573660 88573973 -193619691 - AluY SINE Alu -3 308 1 2194 123 0 0 chr1 88573973 88574266 -193619398 - AluSx SINE Alu -17 295 3 1124 194 46 34 chr1 88575083 88575346 -193618318 - AluJo SINE Alu -5 307 42 196 368 32 21 chr1 88575444 88575539 -193618125 - MIR SINE MIR -85 123 28 382 219 79 35 chr1 88575838 88575941 -193617723 - MLT1K LTR MaLR -2 586 479 977 266 86 22 chr1 88575941 88576039 -193617625 - MLT1L LTR MaLR 0 615 525 1761 187 3 0 chr1 88576039 88576328 -193617336 + AluJb SINE Alu 1 290 -22 977 266 86 22 chr1 88576328 88576635 -193617029 - MLT1L LTR MaLR -90 525 184 257 269 26 39 chr1 88577022 88577100 -193616564 - MLT1K LTR MaLR -451 137 61 2232 155 3 0 chr1 88577242 88577578 -193616086 - MER1B DNA MER1_type -2 337 1 2083 110 0 41 chr1 88577627 88577944 -193615720 - AluSx SINE Alu -8 304 1 1310 186 68 26 chr1 88577965 88578276 -193615388 + MER33 DNA MER1_type 1 324 0 2840 7 0 0 chr1 88578771 88579075 -193614589 + AluYa5 SINE Alu 1 304 -7 781 266 25 10 chr1 88581152 88581355 -193612309 + MIR SINE MIR 47 252 -10 1809 159 55 3 chr1 88582142 88582468 -193611196 - MER2 DNA MER2_type -1 343 1 226 253 220 0 chr1 88582609 88582700 -193610964 - MIR SINE MIR 0 262 152 791 236 124 8 chr1 88582740 88582982 -193610682 - L1ME3 LINE L1 -42 6120 5851 608 273 56 0 chr1 88582983 88583126 -193610538 - MIR SINE MIR -99 163 13 3347 234 99 13 chr1 88583686 88584859 -193608805 - L1MC4 LINE L1 -13 8029 6756 428 260 45 45 chr1 88584985 88585096 -193608568 - L1MC4a LINE L1 -1106 6702 6589 2239 118 10 0 chr1 88585096 88585393 -193608271 + AluSx SINE Alu 1 300 -12 428 260 45 45 chr1 88585393 88585458 -193608206 - L1MC4a LINE L1 -1218 6590 6526 11356 175 18 16 chr1 88585495 88587935 -193605729 - L1PA14 LINE L1 -1688 4458 2013 4658 127 28 23 chr1 88587934 88589466 -193604198 + L1PA14 LINE L1 4469 5993 -168 * 973 182 78 21 chr1 88589519 88589711 -193603953 + AluJo SINE Alu 95 297 -15 373 238 163 0 chr1 88589711 88589858 -193603806 - L1MC4a LINE L1 -1679 6129 5959 392 211 122 0 chr1 88589858 88589948 -193603716 - U6 snRNA snRNA -6 101 1 462 299 100 42 chr1 88590051 88590292 -193603372 + MIR SINE MIR 2 256 -6 542 205 82 8 chr1 88590388 88590510 -193603154 - AluJb SINE Alu -181 131 1 1327 220 34 0 chr1 88590661 88590956 -193602708 - MER58B DNA MER1_type 0 341 37 21 0 0 0 chr1 88591038 88591059 -193602605 + AT_rich Low_complexity Low_complexity 1 21 0 2225 104 0 0 chr1 88591071 88591359 -193602305 - AluSx SINE Alu -24 288 1 26 30 0 0 chr1 88591937 88591970 -193601694 + AT_rich Low_complexity Low_complexity 1 33 0 473 317 35 0 chr1 88591974 88592119 -193601545 + MIR SINE MIR 47 196 -66 311 320 90 0 chr1 88595152 88595252 -193598412 - L2 LINE L2 -43 3229 3121 354 260 146 16 chr1 88595274 88595397 -193598267 + MIR SINE MIR 94 232 -30 242 240 0 67 chr1 88595453 88595528 -193598136 - L2 LINE L2 -208 3064 2995 659 140 10 0 chr1 88595670 88595770 -193597894 - 5S rRNA rRNA -1 120 20 293 360 40 24 chr1 88599355 88599480 -193594184 - L2 LINE L2 -2 3270 3144 2152 143 29 8 chr1 88599482 88599859 -193593805 + MLT1B LTR MaLR 1 385 -5 521 322 85 69 chr1 88600074 88600292 -193593372 - L2 LINE L2 -18 3254 3041 2373 107 0 0 chr1 88600292 88600602 -193593062 - AluY SINE Alu -1 310 1 521 322 85 69 chr1 88600602 88600974 -193592690 - L2 LINE L2 -231 3041 2633 591 235 17 50 chr1 88601094 88601273 -193592391 - MER63A DNA MER1_type -37 173 1 252 317 124 52 chr1 88601299 88601512 -193592152 - L2 LINE L2 -816 2498 2302 2003 137 10 0 chr1 88601512 88601804 -193591860 + AluSx SINE Alu 1 295 -17 411 21 0 0 chr1 88601805 88601853 -193591811 + (CA)n Simple_repeat Simple_repeat 2 49 0 252 317 124 52 chr1 88601853 88602057 -193591607 - L2 LINE L2 -1011 2303 2049 422 235 70 70 chr1 88602239 88602439 -193591225 - MER112 DNA MER1_type -60 200 1 777 204 46 36 chr1 88603451 88603647 -193590017 + MIR SINE MIR 65 262 0 325 286 19 3 chr1 88603855 88604016 -193589648 - MIR SINE MIR -34 228 11 555 246 208 11 chr1 88604131 88604314 -193589350 + MIR SINE MIR 3 221 -41 197 302 67 98 chr1 88605373 88605688 -193587976 - L2 LINE L2 -676 2638 2334 2447 74 0 3 chr1 88606152 88606449 -193587215 - AluSc SINE Alu -13 296 1 327 87 0 0 chr1 88606596 88606671 -193586993 + Alu SINE Alu 236 310 0 2039 128 16 7 chr1 88606752 88607057 -193586607 - AluSp SINE Alu -5 308 1 551 171 0 44 chr1 88607108 88607266 -193586398 + CT-rich Low_complexity Low_complexity 3 153 0 1361 192 69 0 chr1 88607266 88607526 -193586138 - AluJo SINE Alu -34 278 1 2307 128 0 0 chr1 88607624 88607936 -193585728 + AluSx SINE Alu 1 312 0 434 299 62 65 chr1 88608978 88609426 -193584238 - MLT1K LTR MaLR -36 552 106 540 304 42 37 chr1 88609525 88609742 -193583922 + MIR SINE MIR 32 249 -13 3370 45 5 0 chr1 88609856 88610279 -193583385 + L1PA4 LINE L1 5730 6154 -1 401 176 22 0 chr1 88610418 88610509 -193583155 - Charlie8 DNA MER1_type -2269 148 56 184 264 7 146 chr1 88610749 88610893 -193582771 + L2 LINE L2 2923 3046 -226 387 282 10 29 chr1 88611883 88611986 -193581678 - MIR SINE MIR -156 106 6 23 33 0 0 chr1 88612946 88612976 -193580688 + AT_rich Low_complexity Low_complexity 1 30 0 482 153 41 0 chr1 88613005 88613103 -193580561 + L1PB4 LINE L1 6053 6154 -2 294 130 0 0 chr1 88613109 88613155 -193580509 - L1MC2 LINE L1 -38 6306 6261 1206 226 0 21 chr1 88613352 88613464 -193580200 - AluJo SINE Alu -74 238 125 2115 147 0 3 chr1 88613464 88613770 -193579894 - AluJb SINE Alu -7 305 1 1206 226 0 21 chr1 88613770 88613900 -193579764 - AluJo SINE Alu -187 125 1 1761 170 15 15 chr1 88614734 88615063 -193578601 + L1MC1 LINE L1 5999 6327 -6 21 0 0 0 chr1 88615246 88615267 -193578397 + AT_rich Low_complexity Low_complexity 1 21 0 2212 133 27 16 chr1 88616057 88616426 -193577238 - THE1C LTR MaLR -2 373 1 6115 28 4 4 chr1 88616435 88617156 -193576508 - L1PA5 LINE L1 -1 6153 5433 890 52 66 0 chr1 88617156 88617292 -193576372 + L1P LINE L1 5219 5363 -783 1763 145 71 34 chr1 88617435 88617759 -193575905 - MER1B DNA MER1_type 0 337 2 316 269 21 71 chr1 88617847 88617988 -193575676 + MER102a DNA MER1_type 1 134 -196 1535 167 98 0 chr1 88617996 88618288 -193575376 - AluJb SINE Alu 0 333 16 207 0 0 0 chr1 88618329 88618352 -193575312 + (A)n Simple_repeat Simple_repeat 1 23 0 270 305 113 0 chr1 88618438 88618579 -193575085 + MER102a DNA MER1_type 143 299 -31 320 214 71 31 chr1 88618894 88618992 -193574672 + MIR SINE MIR 107 208 -54 210 273 0 0 chr1 88619035 88619090 -193574574 + T-rich Low_complexity Low_complexity 1 55 0 1786 269 82 19 chr1 88619937 88620607 -193573057 + L2 LINE L2 2437 3173 -140 2843 79 0 11 chr1 88620607 88620975 -193572689 - THE1B LTR MaLR 0 364 1 1786 269 82 19 chr1 88620975 88621126 -193572538 + L2 LINE L2 3173 3313 0 303 224 0 0 chr1 88621852 88621910 -193571754 + L2 LINE L2 3213 3270 -2 1991 116 63 28 chr1 88622453 88622815 -193570849 - THE1C LTR MaLR 0 375 1 215 318 194 0 chr1 88622843 88622972 -193570692 - L2 LINE L2 -19 3253 3100 2265 126 0 0 chr1 88623060 88623361 -193570303 + AluSx SINE Alu 1 301 -11 217 293 225 46 chr1 88623413 88623737 -193569927 - L2 LINE L2 -337 2977 2596 599 189 163 63 chr1 88624210 88624591 -193569073 + Charlie7 DNA MER1_type 2190 2608 -4 190 333 37 21 chr1 88624604 88624773 -193568891 + L2 LINE L2 2770 2977 -295 1736 103 127 12 chr1 88624806 88625092 -193568572 + AluSx SINE Alu 1 315 0 1404 209 7 33 chr1 88625120 88625422 -193568242 - AluJb SINE Alu -18 294 1 25 0 0 0 chr1 88625422 88625447 -193568217 + AT_rich Low_complexity Low_complexity 1 25 0 845 168 0 0 chr1 88625447 88625572 -193568092 - FLAM_C SINE Alu -18 125 1 200 364 45 56 chr1 88625574 88625772 -193567892 + L2 LINE L2 3026 3221 -51 718 225 63 115 chr1 88626555 88626981 -193566683 - MLT1K LTR MaLR -2 586 183 1442 153 118 13 chr1 88627316 88627734 -193565930 - LTR54 LTR ERV1 -5 493 1 1315 159 69 76 chr1 88627785 88628074 -193565590 - AluJo SINE Alu -25 287 1 740 173 0 47 chr1 88628265 88628415 -193565249 - AluJo SINE Alu -169 143 1 239 276 0 26 chr1 88628695 88628771 -193564893 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 324 0 0 0 chr1 88628824 88628860 -193564804 + (CCCTAA)n Simple_repeat Simple_repeat 1 36 0 1246 135 0 97 chr1 88628862 88629133 -193564531 + AluJo SINE Alu 81 312 0 2274 100 3 3 chr1 88630187 88630487 -193563177 - AluSg SINE Alu -10 300 1 296 328 103 0 chr1 88630766 88630882 -193562782 - MIR SINE MIR -119 143 16 628 184 0 0 chr1 88631098 88631201 -193562463 - FLAM_A SINE Alu -19 123 21 2055 84 0 7 chr1 88631279 88631553 -193562111 - AluY SINE Alu -3 308 37 279 306 89 16 chr1 88632012 88632136 -193561528 + L2 LINE L2 3171 3303 -10 323 326 157 0 chr1 88632169 88632347 -193561317 + MIR SINE MIR 56 261 -1 369 0 0 0 chr1 88632746 88632787 -193560877 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 341 68 30 chr1 88633235 88633367 -193560297 - L2 LINE L2 -19 3294 3158 336 234 299 0 chr1 88633414 88633551 -193560113 + MER5A DNA MER1_type 12 189 0 309 51 0 0 chr1 88633839 88633878 -193559786 + (TG)n Simple_repeat Simple_repeat 2 40 0 1654 228 127 4 chr1 88633880 88634393 -193559271 - L1MC4 LINE L1 -980 7062 6487 444 135 0 0 chr1 88634393 88634467 -193559197 + (TG)n Simple_repeat Simple_repeat 1 74 0 23 33 0 0 chr1 88635635 88635665 -193557999 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr1 88636687 88636708 -193556956 + (T)n Simple_repeat Simple_repeat 1 21 0 253 200 33 0 chr1 88638543 88638603 -193555061 - Alu SINE Alu -3 299 238 1709 161 25 4 chr1 88638657 88638931 -193554733 - AluJb SINE Alu -32 280 1 1243 71 0 0 chr1 88639888 88640043 -193553621 - AluSq SINE Alu -14 299 145 283 263 32 21 chr1 88640581 88640676 -193552988 - MER5A DNA MER1_type -85 104 9 685 298 156 20 chr1 88641672 88642121 -193551543 + L2 LINE L2 2066 2575 -739 459 0 0 0 chr1 88642433 88642484 -193551180 + (TG)n Simple_repeat Simple_repeat 2 52 0 234 0 0 0 chr1 88642837 88642863 -193550801 + (CA)n Simple_repeat Simple_repeat 2 27 0 201 196 0 0 chr1 88642867 88642918 -193550746 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 561 197 41 23 chr1 88642933 88643073 -193550591 - MLT2B2 LTR ERVL -42 478 323 602 352 124 5 chr1 88643406 88643832 -193549832 + L2 LINE L2 2827 3303 -10 700 249 84 40 chr1 88643844 88644069 -193549595 - MIR SINE MIR -10 252 18 183 313 0 15 chr1 88644195 88644262 -193549402 + L3b LINE CR1 1304 1369 -214 245 310 39 47 chr1 88647281 88647410 -193546254 - LTR67 LTR ERVL -333 224 97 1906 164 2 28 chr1 88647866 88648324 -193545340 - L1PB1 LINE L1 -1379 4767 4322 * 5978 126 18 3 chr1 88648312 88649671 -193543993 + L1PB1 LINE L1 4767 6141 -10 276 30 0 0 chr1 88649671 88649704 -193543960 + (CA)n Simple_repeat Simple_repeat 2 34 0 2152 116 7 0 chr1 88650604 88650896 -193542768 - AluSx SINE Alu -18 294 1 541 288 24 12 chr1 88651117 88651287 -193542377 + MIR SINE MIR 91 262 0 1252 79 0 6 chr1 88652234 88652398 -193541266 - AluSq SINE Alu -11 302 140 363 246 31 31 chr1 88652398 88652528 -193541136 + L1ME4a LINE L1 5988 6117 -4 21 0 0 0 chr1 88653110 88653131 -193540533 + AT_rich Low_complexity Low_complexity 1 21 0 436 285 104 8 chr1 88653484 88653733 -193539931 - L1ME4a LINE L1 -78 6043 5771 * 4987 156 55 3 chr1 88653729 88654627 -193539037 - L1M1 LINE L1 -5529 2036 1093 842 194 13 57 chr1 88654708 88654832 -193538832 - L1M1 LINE L1 -7332 233 122 2302 121 3 0 chr1 88654832 88655139 -193538525 - AluSx SINE Alu -4 308 1 842 194 13 57 chr1 88655139 88655241 -193538423 - L1M1 LINE L1 -7443 122 17 24 32 0 0 chr1 88655455 88655486 -193538178 + AT_rich Low_complexity Low_complexity 1 31 0 1674 253 81 34 chr1 88655582 88656148 -193537516 + MLT1E LTR MaLR 1 593 0 31 0 0 0 chr1 88656382 88656413 -193537251 + AT_rich Low_complexity Low_complexity 1 31 0 305 282 71 6 chr1 88656448 88656618 -193537046 - L1ME4a LINE L1 -195 5926 5746 1111 93 0 0 chr1 88659115 88659255 -193534409 - AluSg/x SINE Alu -73 237 98 16588 116 25 17 chr1 88659265 88662033 -193531631 + L1PA6 LINE L1 11 2799 -3347 13797 68 6 0 chr1 88662033 88664651 -193529013 + L1PA6 LINE L1 3517 6154 0 208 131 357 0 chr1 88664710 88664794 -193528870 + MIR SINE MIR 82 195 -67 2132 116 14 3 chr1 88665041 88665335 -193528329 - AluSx SINE Alu -15 297 1 1226 165 0 15 chr1 88665507 88665707 -193527957 + AluJo SINE Alu 1 197 -115 1834 161 10 7 chr1 88665739 88666030 -193527634 + AluJb SINE Alu 1 292 -20 264 308 66 111 chr1 88667521 88667917 -193525747 - L2 LINE L2 -7 3265 2888 345 47 0 0 chr1 88668270 88668313 -193525351 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 347 117 10 chr1 88668582 88668778 -193524886 + L2 LINE L2 2746 2962 -352 725 256 104 57 chr1 88668797 88669199 -193524465 - MLT1J2 LTR MaLR -29 421 1 189 74 0 0 chr1 88669319 88669346 -193524318 + (CAG)n Simple_repeat Simple_repeat 3 29 0 1879 143 7 13 chr1 88669501 88669801 -193523863 - AluJo SINE Alu -14 298 1 25 31 0 0 chr1 88670380 88670412 -193523252 + AT_rich Low_complexity Low_complexity 1 32 0 331 209 45 75 chr1 88671943 88672034 -193521630 - L1M4 LINE L1 -1404 4742 4655 1878 139 11 4 chr1 88672034 88672314 -193521350 - AluSx SINE Alu -10 302 21 331 209 45 75 chr1 88672314 88672356 -193521308 - L1M4 LINE L1 -1491 4655 4613 1250 226 47 56 chr1 88672496 88672894 -193520770 - MLT2E LTR ERVL -231 397 4 320 324 34 39 chr1 88672894 88673051 -193520613 + L2 LINE L2 2458 2615 -699 2507 161 25 2 chr1 88673051 88673498 -193520166 + MSTB2 LTR MaLR 1 457 0 320 324 34 39 chr1 88673498 88673519 -193520145 + L2 LINE L2 2615 2635 -679 465 281 58 0 chr1 88673531 88673652 -193520012 - MER91C DNA MER1_type -12 128 1 275 360 67 0 chr1 88673661 88673811 -193519853 + L2 LINE L2 2654 2813 -501 631 289 38 51 chr1 88673819 88674054 -193519610 + MIR SINE MIR 22 253 -9 269 328 126 45 chr1 88674084 88674282 -193519382 + L2 LINE L2 2840 3053 -219 2761 170 38 6 chr1 88674399 88674898 -193518766 - MLT2B2 LTR ERVL 0 515 1 233 221 65 188 chr1 88674910 88675064 -193518600 + L2 LINE L2 3138 3272 0 2340 67 40 7 chr1 88675952 88676250 -193517414 + AluY SINE Alu 3 310 -1 186 43 0 0 chr1 88676540 88676563 -193517101 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 2168 107 0 7 chr1 88676571 88676861 -193516803 - AluSx SINE Alu -17 295 8 391 263 201 31 chr1 88676871 88677160 -193516504 + L1ME LINE L1 5378 5717 -404 377 242 192 52 chr1 88679284 88679648 -193514016 - MLT1H LTR MaLR 0 549 135 2001 206 74 49 chr1 88679763 88680157 -193513507 + MER119 DNA MER1_type 1 415 -168 2214 125 0 0 chr1 88680157 88680454 -193513210 - AluSx SINE Alu -15 297 1 2001 206 74 49 chr1 88680454 88680627 -193513037 + MER119 DNA MER1_type 415 582 -1 195 342 35 26 chr1 88680677 88680791 -193512873 - L2 LINE L2 -930 2384 2270 24 32 0 0 chr1 88680929 88680960 -193512704 + AT_rich Low_complexity Low_complexity 1 31 0 233 276 26 40 chr1 88680999 88681075 -193512589 - MIR SINE MIR -16 246 172 4454 167 44 2 chr1 88681103 88681991 -193511673 - L1MB4 LINE L1 0 6180 5258 180 0 0 0 chr1 88682031 88682051 -193511613 + (TG)n Simple_repeat Simple_repeat 1 20 0 294 29 0 0 chr1 88682141 88682176 -193511488 + (GA)n Simple_repeat Simple_repeat 1 35 0 854 173 26 0 chr1 88683052 88683208 -193510456 - MER45A DNA AcHobo -16 162 3 211 296 28 14 chr1 88683442 88683513 -193510151 - MIR SINE MIR -55 153 82 2166 104 27 0 chr1 88683698 88683997 -193509667 + AluY SINE Alu 1 307 -4 1185 125 0 0 chr1 88683997 88684157 -193509507 + AluSg/x SINE Alu 134 293 -19 2310 248 52 7 chr1 88684187 88684904 -193508760 + MER20B DNA MER1_type 35 783 0 683 223 83 26 chr1 88685919 88686112 -193507552 + MIR SINE MIR 2 205 -57 357 264 11 44 chr1 88686413 88686504 -193507160 - L2 LINE L2 -1 3271 3184 27741 28 2 0 chr1 88686675 88690935 -193502729 - L1PA3 LINE L1 -5 6150 1886 195 311 0 49 chr1 88690970 88691031 -193502633 - L2 LINE L2 -325 2988 2931 6166 87 52 32 chr1 88691068 88692058 -193501606 - L1PA11 LINE L1 -2 6172 5179 2250 115 3 0 chr1 88692058 88692354 -193501310 - AluSq SINE Alu -16 297 1 6166 87 52 32 chr1 88692354 88692671 -193500993 - L1PA11 LINE L1 -995 5179 4870 441 237 9 9 chr1 88692676 88692790 -193500874 + L1ME LINE L1 5672 5785 -381 2961 143 0 0 chr1 88692790 88693299 -193500365 - L1P LINE L1 -1280 4866 4358 1139 249 37 18 chr1 88693305 88693561 -193500103 - L1MEc LINE L1 -2699 3516 3266 1613 108 8 0 chr1 88693561 88693802 -193499862 + MER75B DNA T2_type 1 243 0 1139 249 37 18 chr1 88693802 88694060 -193499604 - L1MEc LINE L1 -2949 3266 2992 1634 185 63 29 chr1 88694147 88694530 -193499134 - MSTD LTR MaLR 0 396 1 2777 193 50 4 chr1 88694530 88695068 -193498596 - MSTD-int LTR MaLR 0 1735 1173 2369 213 40 39 chr1 88695143 88695773 -193497891 - L1ME1 LINE L1 -134 6032 5399 1786 179 0 10 chr1 88695773 88696074 -193497590 - AluJo SINE Alu -13 299 2 2369 213 40 39 chr1 88696074 88696264 -193497400 - L1ME1 LINE L1 -767 5399 5211 2260 222 43 33 chr1 88696263 88696536 -193497128 - L1MEc LINE L1 -3246 2969 2700 * 1826 215 58 13 chr1 88696536 88696983 -193496681 - MLT1C LTR MaLR 0 467 1 2260 222 43 33 chr1 88696983 88698020 -193495644 - L1MEc LINE L1 -3515 2700 1675 2161 163 22 27 chr1 88698020 88698432 -193495232 + MLT2D LTR ERVL 1 410 -4 2260 222 43 33 chr1 88698432 88698478 -193495186 - L1MEc LINE L1 -4540 1675 460 645 244 17 28 chr1 88698485 88698665 -193494999 - L1MEc LINE L1 -6182 214 37 609 133 86 0 chr1 88698821 88698949 -193494715 - L1MA6 LINE L1 0 6300 6162 261 0 0 0 chr1 88699162 88699191 -193494473 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1775 177 0 0 chr1 88699194 88699476 -193494188 - AluJb SINE Alu -30 282 1 295 301 55 0 chr1 88699540 88699613 -193494051 + L2 LINE L2 3134 3210 -62 524 51 0 13 chr1 88699619 88699697 -193493967 + LTR6B LTR ERV1 1 77 -481 4850 148 8 0 chr1 88699698 88700468 -193493196 + HERVS71 LTR ERV1 7011 7786 -1192 1893 147 6 0 chr1 88700465 88700779 -193492885 + HERVS71 LTR ERV1 8594 8909 -69 * 4221 66 5 11 chr1 88700779 88701340 -193492324 + LTR6B LTR ERV1 1 558 0 265 271 0 0 chr1 88702018 88702077 -193491587 + MIR SINE MIR 204 262 0 326 290 40 0 chr1 88702459 88702559 -193491105 - MIR SINE MIR 0 262 159 1066 224 75 97 chr1 88702782 88703371 -193490293 - MLT1D LTR MaLR 0 626 8 30 0 0 0 chr1 88703485 88703515 -193490149 + AT_rich Low_complexity Low_complexity 1 30 0 1438 184 35 28 chr1 88703516 88703799 -193489865 - AluJo SINE Alu -25 287 3 18871 123 14 93 chr1 88703842 88707905 -193485759 + L1P LINE L1 12 3752 -2394 12915 81 5 0 chr1 88708043 88710605 -193483059 + L1PA7 LINE L1 3569 6147 -7 24 0 0 0 chr1 88710627 88710651 -193483013 + AT_rich Low_complexity Low_complexity 1 24 0 336 300 47 47 chr1 88710664 88710834 -193482830 - MIR SINE MIR -15 247 78 1572 246 80 19 chr1 88710837 88711431 -193482233 - MLT1E3 LTR MaLR 0 624 1 251 338 38 14 chr1 88711621 88711831 -193481833 + L1M4 LINE L1 4034 4248 -1898 379 268 63 50 chr1 88711934 88712173 -193481491 + L1M4 LINE L1 4400 4641 -1505 4151 225 32 6 chr1 88712178 88713077 -193480587 + L1PA13 LINE L1 1 923 -5864 4220 192 52 14 chr1 88713274 88714737 -193478927 + L1PA13 LINE L1 1326 2865 -3932 3759 213 204 16 chr1 88714745 88716134 -193477530 + L1PBa LINE L1 6 1656 -5207 1571 169 78 44 chr1 88716134 88716602 -193477062 + LTR10A LTR ERV1 1 548 -61 9052 209 16 8 chr1 88716615 88719744 -193473920 + L1PBa LINE L1 1653 4866 -1996 9765 209 13 11 chr1 88720009 88721447 -193472217 + L1 LINE L1 3532 4977 -1820 2155 135 0 3 chr1 88721447 88721751 -193471913 - AluSg SINE Alu -7 303 1 9765 209 13 11 chr1 88721751 88722671 -193470993 + L1 LINE L1 4977 5894 -903 490 268 33 8 chr1 88722929 88723089 -193470575 + MLT2E LTR ERVL 7 155 -473 530 320 85 0 chr1 88723093 88723293 -193470371 + MLT2F LTR ERVL 217 433 -230 612 213 0 13 chr1 88723474 88723624 -193470040 + MLT2E LTR ERVL 471 618 -10 317 382 45 0 chr1 88723636 88723746 -193469918 + L2 LINE L2 2924 3038 -234 730 292 97 33 chr1 88724208 88724629 -193469035 - L2 LINE L2 -5 3308 2861 267 103 0 0 chr1 88724632 88724671 -193468993 + (T)n Simple_repeat Simple_repeat 1 39 0 273 0 0 0 chr1 88725123 88725155 -193468509 - U3 snRNA snRNA -185 32 1 599 330 48 9 chr1 88725498 88725725 -193467939 + MIR SINE MIR 6 241 -21 325 282 204 14 chr1 88726092 88726234 -193467430 - L2 LINE L2 -2 3270 3102 406 131 0 0 chr1 88727558 88727619 -193466045 + MLT1H1 LTR MaLR 494 554 -1 786 291 117 27 chr1 88727620 88728022 -193465642 - ERVL LTR ERVL -2314 3450 3013 540 256 48 26 chr1 88728030 88728343 -193465321 - L1ME LINE L1 -590 5574 5255 1954 220 79 48 chr1 88729381 88730013 -193463651 - MLT1E1 LTR MaLR -2 652 1 515 294 68 0 chr1 88731593 88731739 -193461925 + L2 LINE L2 3158 3313 0 183 310 176 14 chr1 88732605 88732747 -193460917 + MIR SINE MIR 32 196 -66 249 247 82 24 chr1 88733007 88733092 -193460572 - MIR SINE MIR -64 144 55 203 356 99 51 chr1 88733121 88733374 -193460290 + L2 LINE L2 2532 2796 -518 511 198 117 0 chr1 88733410 88733521 -193460143 - L2 LINE L2 0 3313 3190 1844 165 114 21 chr1 88733522 88733826 -193459838 + Charlie1b DNA MER1_type 1 366 -2395 2819 172 44 4 chr1 88733826 88734282 -193459382 + MLT2B2 LTR ERVL 1 480 -35 189 94 0 0 chr1 88734282 88734314 -193459350 + (CA)n Simple_repeat Simple_repeat 2 33 0 2819 172 44 4 chr1 88734314 88734352 -193459312 + MLT2B2 LTR ERVL 480 515 0 1844 165 114 21 chr1 88734352 88734521 -193459143 + Charlie1b DNA MER1_type 366 518 -5 204 279 10 48 chr1 88734539 88734643 -193459021 - L2 LINE L2 -129 3184 3085 202 302 25 104 chr1 88734669 88734871 -193458793 + L2 LINE L2 2866 3051 -221 1232 233 113 42 chr1 88735064 88735541 -193458123 - MLT1J LTR MaLR 0 511 1 426 316 88 0 chr1 88736753 88736924 -193456740 - L2 LINE L2 0 3313 3128 265 238 56 63 chr1 88736981 88737107 -193456557 - MIR SINE MIR -51 211 87 241 294 22 88 chr1 88737817 88737953 -193455711 + MIR SINE MIR 5 131 -131 278 181 0 97 chr1 88738802 88738874 -193454790 - MER5A DNA MER1_type -2 187 123 216 296 204 14 chr1 88738815 88738957 -193454707 + MER5A DNA MER1_type 21 189 0 * 400 309 57 0 chr1 88739274 88739397 -193454267 + L2 LINE L2 3143 3272 0 216 0 0 0 chr1 88740557 88740581 -193453083 + (A)n Simple_repeat Simple_repeat 1 24 0 1592 155 8 0 chr1 88740582 88740847 -193452817 - L1MB1 LINE L1 -6 6162 5896 1207 140 0 0 chr1 88740848 88741034 -193452630 + L1MB1 LINE L1 5604 5789 -379 1137 172 5 0 chr1 88741125 88741334 -193452330 - MER2 DNA MER2_type -135 210 1 372 136 86 12 chr1 88741336 88741417 -193452247 + L1MB1 LINE L1 5793 5879 -289 4725 85 0 2 chr1 88741439 88742073 -193451591 + L1PA8 LINE L1 5539 6171 -1 1396 119 17 3 chr1 88742366 88742709 -193450955 + L1PA16 LINE L1 5712 6149 -17 300 300 73 18 chr1 88742986 88743096 -193450568 + MIR3 SINE MIR 72 187 -21 425 323 24 18 chr1 88743373 88743540 -193450124 - L2 LINE L2 -463 2851 2684 2040 161 0 0 chr1 88744316 88744626 -193449038 - AluJb SINE Alu -2 310 1 1794 169 80 5 chr1 88744633 88745302 -193448362 + MER21B LTR ERV1 89 847 -16 618 222 71 80 chr1 88745355 88745580 -193448084 + L2 LINE L2 3087 3309 -4 195 299 172 0 chr1 88745850 88745937 -193447727 - MIR SINE MIR 0 262 161 255 61 0 0 chr1 88745937 88745970 -193447694 + (T)n Simple_repeat Simple_repeat 1 33 0 24 0 0 0 chr1 88746075 88746099 -193447565 + AT_rich Low_complexity Low_complexity 1 24 0 12305 17 0 0 chr1 88746099 88748366 -193445298 - L1HS LINE L1 0 6155 3889 2199 26 0 0 chr1 88748364 88748636 -193445028 + L1HS LINE L1 3639 3910 -2236 * 436 299 22 7 chr1 88748640 88748777 -193444887 - MIR SINE MIR -107 155 17 182 375 88 0 chr1 88749062 88749142 -193444522 - MER5A DNA MER1_type 0 189 103 23 0 0 0 chr1 88749153 88749176 -193444488 + AT_rich Low_complexity Low_complexity 1 23 0 5433 109 14 5 chr1 88749176 88750011 -193443653 - L1MA5A LINE L1 -3 6294 5452 216 135 0 0 chr1 88750302 88750339 -193443325 + (TG)n Simple_repeat Simple_repeat 2 38 0 1334 164 16 4 chr1 88750366 88750621 -193443043 - Tigger7 DNA MER2_type -1 2490 2233 639 173 29 36 chr1 88750621 88750760 -193442904 - Tigger1 DNA MER2_type 0 2418 2281 2368 115 0 3 chr1 88750807 88751120 -193442544 + AluSx SINE Alu 1 312 0 759 116 8 16 chr1 88751144 88751265 -193442399 - Tigger1 DNA MER2_type -2275 143 24 208 257 14 29 chr1 88751871 88751941 -193441723 - MIR SINE MIR 0 262 194 354 240 13 0 chr1 88751971 88752046 -193441618 - MIR SINE MIR -182 80 5 330 67 0 0 chr1 88753566 88753611 -193440053 + (GA)n Simple_repeat Simple_repeat 2 46 0 246 32 0 0 chr1 88753611 88753642 -193440022 + (TG)n Simple_repeat Simple_repeat 1 31 0 542 291 163 26 chr1 88755102 88755555 -193438109 + LTR33 LTR ERVL 1 515 -6 182 317 61 0 chr1 88755555 88755637 -193438027 + L2 LINE L2 2854 2940 -332 298 329 79 14 chr1 88755666 88755806 -193437858 - L3 LINE CR1 -12 1565 1417 189 228 18 53 chr1 88755819 88755876 -193437788 - L2 LINE L2 0 3313 3259 1123 107 0 0 chr1 88756049 88756198 -193437466 - AluSg/x SINE Alu -29 283 135 186 172 0 0 chr1 88756214 88756243 -193437421 + L2 LINE L2 3199 3227 -86 599 221 97 60 chr1 88756261 88756642 -193437022 - MLT1E2 LTR MaLR -118 508 10 509 139 23 70 chr1 88756829 88756891 -193436773 + MLT1E3 LTR MaLR 502 556 -68 1718 56 43 0 chr1 88756891 88757123 -193436541 - L1PA8 LINE L1 -3 6169 5928 509 139 23 70 chr1 88757123 88757189 -193436475 + MLT1E3 LTR MaLR 556 624 0 354 289 119 19 chr1 88757518 88757677 -193435987 + MIR SINE MIR 37 211 -51 335 301 89 20 chr1 88759001 88759147 -193434517 - MIR SINE MIR -51 211 56 22858 172 20 30 chr1 88759551 88760046 -193433618 + L1PA10 LINE L1 77 576 -5913 189 0 0 0 chr1 88760046 88760067 -193433597 + (CACAG)n Simple_repeat Simple_repeat 1 21 0 22858 172 20 30 chr1 88760067 88765192 -193428472 + L1PA10 LINE L1 576 5783 -706 275 0 0 28 chr1 88765193 88765229 -193428435 + (TTA)n Simple_repeat Simple_repeat 3 37 0 766 12 0 0 chr1 88765229 88765315 -193428349 - L1PA4 LINE L1 -18 6137 6052 4761 90 43 4 chr1 88765315 88765993 -193427671 + L1PA10 LINE L1 5778 6483 0 6569 188 75 15 chr1 88766011 88767416 -193426248 + L1PA13 LINE L1 1003 2588 -4209 7098 59 1 0 chr1 88767416 88769101 -193424563 - L1PA5 LINE L1 -2 6152 4470 6569 188 75 15 chr1 88769101 88769742 -193423922 + L1PA13 LINE L1 2588 3189 -3608 760 165 0 6 chr1 88770007 88770165 -193423499 - L1P LINE L1 -2900 3246 3090 351 121 0 0 chr1 88770323 88770381 -193423283 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 238 345 45 9 chr1 88770610 88770720 -193422944 + MIR SINE MIR 128 241 -21 265 270 78 61 chr1 88771527 88771642 -193422022 + L2 LINE L2 3155 3271 -1 779 209 6 25 chr1 88772444 88772629 -193421035 - AluJo SINE Alu 0 313 132 25 31 0 0 chr1 88772639 88772671 -193420993 + AT_rich Low_complexity Low_complexity 1 32 0 650 200 7 15 chr1 88772671 88772806 -193420858 - AluJo SINE Alu -178 134 1 1816 266 54 55 chr1 88773085 88773715 -193419949 + L2 LINE L2 2413 3038 -275 187 316 98 8 chr1 88773695 88773828 -193419836 + L2 LINE L2 1928 2072 -1242 * 7683 165 15 37 chr1 88773841 88776606 -193417058 - L1PA16 LINE L1 -9 6157 3465 843 318 92 25 chr1 88776607 88777053 -193416611 + L2 LINE L2 2060 2535 -779 701 225 147 77 chr1 88777098 88777555 -193416109 + MLT1D LTR MaLR 8 496 -9 268 396 21 11 chr1 88777562 88777749 -193415915 + L2 LINE L2 2567 2755 -559 2405 163 69 23 chr1 88779363 88779842 -193413822 + MLT1D LTR MaLR 1 501 -4 226 334 100 75 chr1 88780345 88780797 -193412867 - L2 LINE L2 0 3272 2810 346 352 60 25 chr1 88780891 88781090 -193412574 - L2 LINE L2 -46 3226 3021 2133 82 0 60 chr1 88781180 88781495 -193412169 - AluSx SINE Alu -16 296 1 226 311 25 66 chr1 88781501 88781623 -193412041 - MER5A DNA MER1_type -44 145 29 324 0 0 0 chr1 88782235 88782271 -193411393 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 342 349 76 35 chr1 88783525 88783697 -193409967 + L2 LINE L2 2575 2753 -561 1182 169 18 0 chr1 88783709 88783928 -193409736 + MLT1B LTR MaLR 1 223 -167 1902 158 41 11 chr1 88783929 88784376 -193409288 + L1M2 LINE L1 5168 5617 -695 226 349 187 12 chr1 88784378 88784544 -193409120 - L2 LINE L2 -352 2962 2768 441 136 50 2 chr1 88784548 88784689 -193408975 - MLT1B LTR MaLR -1 389 210 234 0 0 0 chr1 88784689 88784715 -193408949 + (T)n Simple_repeat Simple_repeat 1 26 0 7880 16 0 0 chr1 88784744 88786005 -193407659 - L1PA2 LINE L1 0 6155 4895 25 0 0 0 chr1 88786011 88786036 -193407628 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 88786064 88786086 -193407578 + AT_rich Low_complexity Low_complexity 1 22 0 1452 204 143 50 chr1 88786086 88786590 -193407074 - L1MA9 LINE L1 -38 6274 5724 213 275 0 0 chr1 88786649 88786689 -193406975 + L2 LINE L2 3137 3176 -96 423 300 46 28 chr1 88787993 88788193 -193405471 - MIR SINE MIR -50 212 6 398 295 115 6 chr1 88788739 88788922 -193404742 - MIR SINE MIR 0 262 60 749 276 202 19 chr1 88790447 88791014 -193402650 + L2 LINE L2 2646 3313 0 237 211 19 0 chr1 88791012 88791064 -193402600 - L2 LINE L2 0 3313 3261 * 739 165 25 44 chr1 88791254 88791412 -193402252 - MER58B DNA MER1_type 0 341 187 3064 226 5 8 chr1 88792531 88793285 -193400379 - L1MA9 LINE L1 -825 5321 4570 332 305 11 0 chr1 88793842 88793937 -193399727 + CT-rich Low_complexity Low_complexity 5 100 0 574 271 77 77 chr1 88795004 88795381 -193398283 + MLT1I LTR MaLR 33 409 0 2839 119 4 44 chr1 88795644 88795922 -193397742 + Tigger2a DNA MER2_type 1 289 -2419 2610 83 11 0 chr1 88795922 88796273 -193397391 + THE1A LTR MaLR 1 355 0 11545 93 3 12 chr1 88796273 88797867 -193395797 + THE1A-int LTR MaLR 1 1580 0 2572 79 35 0 chr1 88797867 88798210 -193395454 + THE1A LTR MaLR 1 355 0 2839 119 4 44 chr1 88798210 88798381 -193395283 + Tigger2a DNA MER2_type 286 434 0 255 318 91 0 chr1 88799622 88799732 -193393932 + L2 LINE L2 3190 3309 -4 278 353 108 0 chr1 88799907 88800046 -193393618 + MIR SINE MIR 20 173 -89 1707 149 54 40 chr1 88800563 88800933 -193392731 + THE1C LTR MaLR 1 375 0 263 313 172 0 chr1 88801287 88801421 -193392243 - MIR SINE MIR -73 189 33 252 394 20 56 chr1 88801779 88802028 -193391636 + L2 LINE L2 151 390 -2924 1265 170 24 24 chr1 88802088 88802335 -193391329 + Tigger1 DNA MER2_type 2172 2418 0 215 283 66 20 chr1 88802520 88802672 -193390992 - L2 LINE L2 -1224 2090 1932 2381 58 3 13 chr1 88802880 88803189 -193390475 + AluY SINE Alu 6 311 0 2677 251 80 33 chr1 88803382 88804356 -193389308 - L1MEc LINE L1 -5340 1782 763 270 273 15 0 chr1 88805275 88805341 -193388323 - L2 LINE L2 -1 3312 3246 519 17 0 0 chr1 88805346 88805406 -193388258 + (CCAA)n Simple_repeat Simple_repeat 2 61 0 1743 201 17 44 chr1 88805516 88805923 -193387741 + MSTD LTR MaLR 1 396 0 197 327 0 0 chr1 88807327 88807382 -193386282 + MIR SINE MIR 93 147 -115 216 408 107 0 chr1 88807468 88807571 -193386093 + L2 LINE L2 3158 3271 -1 297 207 66 83 chr1 88807879 88808000 -193385664 - L1ME3 LINE L1 -83 6079 5961 1588 250 120 51 chr1 88808088 88808996 -193384668 - L1MC5 LINE L1 -430 7531 6605 347 256 0 67 chr1 88809389 88809479 -193384185 + L2 LINE L2 3189 3272 0 1998 128 14 0 chr1 88810051 88810341 -193383323 - AluSq SINE Alu -19 294 1 2935 259 139 39 chr1 88810916 88812293 -193381371 + Charlie8 DNA MER1_type 27 1541 -876 40535 65 12 5 chr1 88812608 88818710 -193374954 + L1PA6 LINE L1 4 6151 -3 365 262 47 0 chr1 88819860 88819967 -193373697 + Charlie8 DNA MER1_type 1548 1659 -758 192 149 30 15 chr1 88820377 88820444 -193373220 + (TA)n Simple_repeat Simple_repeat 1 68 0 629 266 5 63 chr1 88821029 88821236 -193372428 + MIR SINE MIR 56 250 -12 188 338 44 22 chr1 88821268 88821404 -193372260 - L2 LINE L2 -2529 785 647 644 257 14 74 chr1 88822515 88822881 -193370783 - L1M4 LINE L1 -2768 3378 3035 508 200 200 46 chr1 88823195 88823390 -193370274 - MLT1H1 LTR MaLR -5 550 326 315 265 50 68 chr1 88823667 88823886 -193369778 - L1MEc LINE L1 -6175 248 34 863 236 62 36 chr1 88824029 88824254 -193369410 - ERVL LTR ERVL -3221 2543 2313 23 0 0 0 chr1 88824280 88824303 -193369361 + AT_rich Low_complexity Low_complexity 1 23 0 710 198 0 0 chr1 88824307 88824428 -193369236 - FLAM_A SINE Alu -12 121 1 1077 278 101 6 chr1 88826322 88826747 -193366917 - MLT2E LTR ERVL -6 622 93 3493 259 48 5 chr1 88827152 88828415 -193365249 - ERVL LTR ERVL -483 5281 3920 1419 268 34 3 chr1 88828407 88828761 -193364903 - ERVL LTR ERVL -3089 2675 2311 * 1299 233 26 8 chr1 88828792 88829183 -193364481 + L1M4 LINE L1 2636 3033 -3113 2260 150 17 19 chr1 88829193 88829809 -193363855 - L1M2 LINE L1 -634 5678 5063 331 135 72 8 chr1 88829822 88830082 -193363582 + (TA)n Simple_repeat Simple_repeat 1 276 0 2662 112 82 40 chr1 88830130 88830628 -193363036 + L1MA9 LINE L1 5774 6292 -20 783 204 42 0 chr1 88830657 88830873 -193362791 + L1M4 LINE L1 3035 3259 -2887 4077 145 74 43 chr1 88830894 88831715 -193361949 + MER4D LTR ERV1 1 847 -56 4171 157 8 14 chr1 88831715 88832430 -193361234 - MER50 LTR ERV1 -23 711 1 391 131 0 0 chr1 88832430 88832491 -193361173 + MER4E LTR ERV1 719 779 0 257 252 223 0 chr1 88832493 88832596 -193361068 + L1M4 LINE L1 3286 3411 -2735 1617 165 19 113 chr1 88832610 88833117 -193360547 + L1M4 LINE L1 5189 5647 -527 23 68 0 0 chr1 88833616 88833660 -193360004 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr1 88833792 88833827 -193359837 + AT_rich Low_complexity Low_complexity 1 35 0 53 57 0 0 chr1 88833888 88833976 -193359688 + AT_rich Low_complexity Low_complexity 1 88 0 484 297 6 28 chr1 88834410 88834732 -193358932 + CT-rich Low_complexity Low_complexity 1 314 0 270 254 16 0 chr1 88835447 88835510 -193358154 - L2 LINE L2 0 3313 3250 297 363 30 36 chr1 88836339 88836507 -193357157 - MIR SINE MIR -74 188 22 322 300 50 0 chr1 88837229 88837329 -193356335 - MIR SINE MIR -67 141 37 27 0 0 0 chr1 88837404 88837431 -193356233 + AT_rich Low_complexity Low_complexity 1 27 0 407 380 59 21 chr1 88837514 88837940 -193355724 + L2 LINE L2 997 1438 -1876 666 261 56 0 chr1 88838006 88838186 -193355478 + MIR SINE MIR 8 197 -65 6952 57 7 0 chr1 88838578 88839848 -193353816 + L1PA7 LINE L1 4863 6139 -15 304 250 0 43 chr1 88839853 88839945 -193353719 - L1MC4 LINE L1 -1339 6703 6616 239 363 121 0 chr1 88839980 88840104 -193353560 - MIR3 SINE MIR -25 183 45 1777 137 12 28 chr1 88840456 88840778 -193352886 + L1MA8 LINE L1 5975 6291 0 1550 236 305 19 chr1 88840787 88841465 -193352199 - L1MC4 LINE L1 -586 7456 6585 479 247 0 0 chr1 88843061 88843154 -193350510 + L2 LINE L2 3180 3272 0 2051 122 0 4 chr1 88843285 88843564 -193350100 + AluSg SINE Alu 1 278 -32 304 0 64 21 chr1 88843566 88843613 -193350051 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 727 214 0 0 chr1 88844108 88844234 -193349430 - FLAM_A SINE Alu -6 127 2 651 317 16 24 chr1 88844375 88844621 -193349043 + MIR SINE MIR 12 255 -7 226 204 23 0 chr1 88845230 88845274 -193348390 - L2 LINE L2 0 3272 3228 8995 50 0 3 chr1 88845552 88845563 -193348101 + L1P LINE L1 3179 3189 -2957 7010 60 2 5 chr1 88845563 88846737 -193346927 - L1PA5 LINE L1 0 6154 4980 8995 50 0 3 chr1 88846737 88847857 -193345807 + L1P LINE L1 3189 4306 -1840 236 311 48 32 chr1 88847882 88848060 -193345604 - MER5A DNA MER1_type -5 173 7 210 147 0 0 chr1 88848164 88848198 -193345466 + (CAAAA)n Simple_repeat Simple_repeat 4 37 0 1666 181 10 3 chr1 88849579 88849656 -193344008 - L1MB5 LINE L1 -36 6138 6062 2662 193 60 14 chr1 88849656 88850591 -193343073 - L1MD3 LINE L1 -412 6260 5521 307 184 184 0 chr1 88850593 88850680 -193342984 - L1MD3 LINE L1 -5610 932 830 280 271 111 7 chr1 88850690 88850834 -193342830 - L1MD3 LINE L1 -6376 166 8 1242 274 84 34 chr1 88850890 88851365 -193342299 + MLT1D LTR MaLR 6 504 -1 285 100 0 0 chr1 88851473 88851523 -193342141 + (CA)n Simple_repeat Simple_repeat 1 50 0 183 80 0 0 chr1 88851531 88851556 -193342108 + (TA)n Simple_repeat Simple_repeat 1 25 0 562 218 14 35 chr1 88852133 88852275 -193341389 + MLT1A2 LTR MaLR 236 374 0 1818 192 52 18 chr1 88853202 88853583 -193340081 - MLT1D LTR MaLR -5 500 107 209 328 31 110 chr1 88853584 88853901 -193339763 - L2 LINE L2 -90 3182 2891 325 282 145 0 chr1 88854072 88854184 -193339480 + MIR3 SINE MIR 60 197 -11 2036 157 72 66 chr1 88855899 88855945 -193337719 - MLT1D LTR MaLR 0 505 461 2140 153 122 0 chr1 88855945 88856330 -193337334 - MSTB1 LTR MaLR 0 432 1 2036 157 72 66 chr1 88856330 88856785 -193336879 - MLT1D LTR MaLR -44 461 1 2149 114 0 10 chr1 88856826 88857125 -193336539 + AluSx SINE Alu 1 296 -16 243 346 37 0 chr1 88857246 88857353 -193336311 + MIR SINE MIR 138 248 -14 522 226 22 18 chr1 88857606 88857939 -193335725 + CT-rich Low_complexity Low_complexity 1 334 0 491 270 39 1 chr1 88858042 88858192 -193335472 - MIR3 SINE MIR -49 159 2 23 0 0 0 chr1 88858897 88858920 -193334744 + AT_rich Low_complexity Low_complexity 1 23 0 2157 118 3 0 chr1 88859357 88859644 -193334020 + AluSq SINE Alu 1 288 -25 37 39 0 0 chr1 88861221 88861272 -193332392 + AT_rich Low_complexity Low_complexity 1 51 0 2694 36 0 0 chr1 88861280 88861585 -193332079 - AluY SINE Alu -6 305 1 2576 122 3 0 chr1 88861956 88862317 -193331347 + THE1B LTR MaLR 3 364 0 183 412 44 0 chr1 88862527 88862641 -193331023 + L3 LINE CR1 115 233 -1344 962 334 203 9 chr1 88862816 88863613 -193330051 + L3 LINE CR1 459 1410 -167 223 230 81 69 chr1 88864471 88864558 -193329106 + MIR SINE MIR 175 262 0 180 283 22 0 chr1 88864760 88864806 -193328858 - L2 LINE L2 -90 3182 3136 993 185 30 5 chr1 88864930 88865130 -193328534 + MLT1C LTR MaLR 1 205 -262 411 353 108 0 chr1 88865404 88865636 -193328028 - MIR SINE MIR -4 258 2 2088 148 15 0 chr1 88865877 88866214 -193327450 + MER2 DNA MER2_type 1 342 -2 2339 96 0 13 chr1 88866746 88867059 -193326605 - AluSc SINE Alu 0 309 1 352 264 57 29 chr1 88868208 88868348 -193325316 + MIR SINE MIR 119 262 0 655 280 31 92 chr1 88868851 88869294 -193324370 + MLT1J1 LTR MaLR 1 414 -32 336 328 60 34 chr1 88869593 88870103 -193323561 + L1MEc LINE L1 1102 1530 -1043 328 186 0 23 chr1 88870475 88870561 -193323103 + C-rich Low_complexity Low_complexity 5 88 0 1106 236 72 54 chr1 88870670 88870701 -193322963 - MLT1J1 LTR MaLR -50 396 367 2780 173 91 62 chr1 88870701 88871408 -193322256 + LTR8A LTR ERV1 1 727 0 1106 236 72 54 chr1 88871408 88871765 -193321899 - MLT1J1 LTR MaLR -79 367 1 287 254 77 48 chr1 88871955 88872164 -193321500 + L1MEc LINE L1 2138 2352 -3794 2237 153 39 13 chr1 88872253 88872638 -193321026 - Tigger3(Golem) DNA MER2_type -1 3028 2634 21 0 0 0 chr1 88872787 88872808 -193320856 + AT_rich Low_complexity Low_complexity 1 21 0 219 276 52 0 chr1 88873003 88873061 -193320603 - L2 LINE L2 -5 3308 3248 1430 258 70 62 chr1 88873792 88874320 -193319344 - MLT1G1 LTR MaLR 0 595 64 2329 106 0 0 chr1 88874591 88874894 -193318770 + AluSx SINE Alu 1 303 -9 1773 132 127 43 chr1 88874917 88875287 -193318377 - MSTA LTR MaLR -27 401 1 416 268 14 29 chr1 88876772 88876910 -193316754 - L2 LINE L2 -10 3303 3168 235 356 111 39 chr1 88877432 88877640 -193316024 - L2 LINE L2 -44 3228 3006 542 89 127 0 chr1 88877742 88877821 -193315843 - 5S rRNA rRNA -31 90 2 780 143 8 136 chr1 88879336 88879587 -193314077 + MER20 DNA MER1_type 1 219 0 183 156 0 0 chr1 88879645 88879677 -193313987 + GA-rich Low_complexity Low_complexity 2 33 0 310 304 46 60 chr1 88880322 88880661 -193313003 + L2 LINE L2 2722 3059 -213 555 196 29 142 chr1 88880799 88880863 -193312801 - MER5A DNA MER1_type 0 189 119 1555 91 9 0 chr1 88880863 88881084 -193312580 + L1PA8 LINE L1 5949 6171 -1 555 196 29 142 chr1 88881084 88881223 -193312441 - MER5A DNA MER1_type -70 119 9 820 204 19 0 chr1 88882608 88882770 -193310894 - MLT1B LTR MaLR 0 390 226 4683 181 30 21 chr1 88883141 88884601 -193309063 - L1MB5 LINE L1 -8 6166 4693 24 0 0 0 chr1 88885931 88885955 -193307709 + AT_rich Low_complexity Low_complexity 1 24 0 695 161 7 0 chr1 88888054 88888191 -193305473 + L1MB7 LINE L1 6031 6168 -16 506 204 217 74 chr1 88889304 88889534 -193304130 - L2 LINE L2 -1 3312 3050 299 330 99 16 chr1 88889586 88889768 -193303896 - L2 LINE L2 0 3313 3117 209 254 127 28 chr1 88890954 88891025 -193302639 + MIR SINE MIR 6 83 -179 265 247 55 61 chr1 88891078 88891205 -193302459 + MIR SINE MIR 86 219 -43 953 50 0 0 chr1 88891412 88891531 -193302133 + L1PA3 LINE L1 6037 6155 0 3197 29 0 3 chr1 88891533 88891915 -193301749 + L1PA5 LINE L1 5770 6150 -4 13574 196 154 5 chr1 88892466 88893414 -193300250 - L1P3 LINE L1 -869 6715 5910 2265 107 3 0 chr1 88893414 88893714 -193299950 - AluSx SINE Alu -11 301 1 13574 196 154 5 chr1 88893714 88896108 -193297556 - L1P3 LINE L1 -1674 5910 2875 3618 79 10 0 chr1 88896139 88896630 -193297034 - L1PA7 LINE L1 -13 6141 5646 23878 117 8 23 chr1 88896634 88901245 -193292419 - L1P3 LINE L1 -1832 4629 4 2211 147 54 12 chr1 88901235 88901643 -193292021 - L1P3 LINE L1 -4723 2858 2434 * 1244 282 27 53 chr1 88901680 88902124 -193291540 - L1P3 LINE L1 -5236 2348 1223 2102 147 0 0 chr1 88902311 88902623 -193291041 + AluJo SINE Alu 1 312 0 333 290 49 43 chr1 88902736 88902898 -193290766 + L1ME4a LINE L1 5956 6118 -3 366 312 21 43 chr1 88903306 88903447 -193290217 - L1ME4a LINE L1 -19 6102 5965 289 79 318 16 chr1 88904659 88904698 -193288966 - MLT2A1 LTR ERVL 0 444 418 237 65 0 0 chr1 88904698 88904729 -193288935 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 289 79 318 16 chr1 88904729 88904752 -193288912 - MLT2A1 LTR ERVL -26 418 363 2529 114 30 18 chr1 88904811 88905206 -193288458 - MLT2A1 LTR ERVL -44 400 1 1931 164 65 38 chr1 88905639 88906084 -193287580 - MSTB2 LTR MaLR 0 457 1 274 303 0 0 chr1 88906303 88906369 -193287295 - L2 LINE L2 -13 3259 3194 400 222 9 93 chr1 88906486 88906594 -193287070 - L2 LINE L2 -4 3268 3170 5932 152 24 16 chr1 88906662 88908247 -193285417 - L1MA4 LINE L1 0 6300 4701 1743 175 38 35 chr1 88908247 88908392 -193285272 + L1 LINE L1 4314 4457 -1689 2068 129 0 0 chr1 88908392 88908708 -193284956 + AluSc SINE Alu 1 316 0 1743 175 38 35 chr1 88908708 88908954 -193284710 + L1 LINE L1 4457 4708 -1438 279 336 8 23 chr1 88908955 88909083 -193284581 + L2 LINE L2 2661 2786 -528 699 281 48 9 chr1 88910296 88910524 -193283140 - MIR SINE MIR -6 256 20 14228 220 42 11 chr1 88911377 88916857 -193276807 + L1PA12 LINE L1 21 6071 -1513 820 154 7 0 chr1 88916874 88917017 -193276647 + L1PA13 LINE L1 6017 6160 -3 448 247 18 22 chr1 88917793 88917927 -193275737 + MIR SINE MIR 57 190 -64 22 70 0 0 chr1 88917957 88918000 -193275664 + AT_rich Low_complexity Low_complexity 1 43 0 241 183 5 102 chr1 88918000 88918186 -193275478 + (TATAA)n Simple_repeat Simple_repeat 2 169 0 139 62 0 0 chr1 88918197 88918441 -193275223 + AT_rich Low_complexity Low_complexity 1 244 0 1902 167 0 3 chr1 88918509 88918815 -193274849 + AluJo SINE Alu 1 305 -7 244 298 0 0 chr1 88919147 88919194 -193274470 + Alu SINE Alu 231 277 -25 353 246 135 32 chr1 88919197 88919323 -193274341 + MER5A DNA MER1_type 51 189 0 22 99 0 0 chr1 88919797 88919868 -193273796 + AT_rich Low_complexity Low_complexity 1 71 0 21 36 0 0 chr1 88920304 88920332 -193273332 + AT_rich Low_complexity Low_complexity 1 28 0 741 276 33 23 chr1 88920561 88920775 -193272889 - MIR SINE MIR -13 249 34 201 136 0 45 chr1 88922281 88922325 -193271339 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 442 245 34 20 chr1 88922478 88922625 -193271039 + L1ME LINE L1 5534 5682 -439 180 0 0 0 chr1 88923129 88923149 -193270515 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1208 122 0 3 chr1 88923246 88923649 -193270015 + (TTCC)n Simple_repeat Simple_repeat 1 581 0 1772 136 0 39 chr1 88923655 88923934 -193269730 - AluSx SINE Alu -44 268 1 2007 233 86 13 chr1 88924472 88925089 -193268575 - L1MC4 LINE L1 -140 7902 7241 1695 161 91 168 chr1 88925090 88925780 -193267884 - L1MC4 LINE L1 -959 7083 6447 280 298 207 5 chr1 88926385 88926573 -193267091 - MIR SINE MIR 0 262 37 287 266 89 10 chr1 88929949 88930061 -193263603 - MIR SINE MIR -87 121 1 24 77 0 0 chr1 88930743 88930795 -193262869 + AT_rich Low_complexity Low_complexity 1 52 0 318 26 0 0 chr1 88930941 88930980 -193262684 + (TG)n Simple_repeat Simple_repeat 1 39 0 1749 153 44 7 chr1 88932694 88932969 -193260695 - AluSx SINE Alu -23 289 5 266 262 0 16 chr1 88933154 88933215 -193260449 - MLT1K LTR MaLR -340 248 189 193 342 175 9 chr1 88933660 88933774 -193259890 - L2 LINE L2 0 3272 3140 2386 280 93 40 chr1 88934127 88934160 -193259504 + L2 LINE L2 1243 1273 -2041 2307 105 0 6 chr1 88934160 88934474 -193259190 - AluSx SINE Alu 0 312 1 2386 280 93 40 chr1 88934474 88935372 -193258292 + L2 LINE L2 1273 2224 -1090 785 262 151 73 chr1 88935375 88936424 -193257240 - L1MEc LINE L1 -4035 2275 1146 352 264 91 9 chr1 88936439 88936549 -193257115 - L1MEc LINE L1 -5071 1048 930 2076 155 36 44 chr1 88936784 88937172 -193256492 - MLT1B LTR MaLR -5 385 1 22 0 0 0 chr1 88937832 88937854 -193255810 + AT_rich Low_complexity Low_complexity 1 22 0 670 314 104 18 chr1 88938304 88938746 -193254918 - MLT1J LTR MaLR -30 481 2 364 287 119 38 chr1 88938906 88939167 -193254497 - LTR16A LTR ERVL -8 442 161 202 329 138 38 chr1 88939356 88939566 -193254098 - L2 LINE L2 -218 3054 2824 * 390 320 150 26 chr1 88939547 88939781 -193253883 - L2 LINE L2 -439 2875 2613 195 232 0 0 chr1 88940458 88940514 -193253150 + (TA)n Simple_repeat Simple_repeat 1 56 0 195 259 43 79 chr1 88940574 88940713 -193252951 + L2 LINE L2 3180 3313 0 612 293 42 42 chr1 88940752 88940991 -193252673 - MIR SINE MIR -18 244 6 2157 116 129 8 chr1 88941241 88941622 -193252042 - MSTA LTR MaLR 0 428 2 300 329 107 21 chr1 88941825 88941965 -193251699 + L2 LINE L2 3121 3272 0 1192 173 5 5 chr1 88942636 88942875 -193250789 - AluJo SINE Alu 0 319 81 23 0 0 0 chr1 88943143 88943166 -193250498 + AT_rich Low_complexity Low_complexity 1 23 0 553 286 19 0 chr1 88943202 88943363 -193250301 + L2 LINE L2 2158 2321 -993 292 315 106 72 chr1 88943446 88943715 -193249949 - L2 LINE L2 -1142 2172 1889 252 59 0 0 chr1 88943715 88943749 -193249915 + (TG)n Simple_repeat Simple_repeat 1 34 0 292 315 106 72 chr1 88943749 88943800 -193249864 - L2 LINE L2 -1425 1889 1841 1423 172 56 8 chr1 88943802 88944096 -193249568 - AluSg SINE Alu 0 309 3 349 310 125 9 chr1 88944370 88944586 -193249078 - L2 LINE L2 -1480 1834 1594 370 302 113 28 chr1 88945493 88945705 -193247959 + L3 LINE CR1 1170 1399 -178 191 327 0 0 chr1 88946386 88946441 -193247223 - MIR SINE MIR -97 111 57 386 324 133 12 chr1 88946667 88946923 -193246741 - L1M4 LINE L1 -1810 4336 4050 268 240 32 56 chr1 88946988 88947113 -193246551 - MER103 DNA DNA -10 156 35 263 217 0 24 chr1 88947291 88947374 -193246290 - L1M4 LINE L1 -2191 3955 3875 261 345 79 24 chr1 88947418 88947583 -193246081 + MIR SINE MIR 6 179 -83 233 255 0 0 chr1 88947574 88947621 -193246043 + L2 LINE L2 3210 3256 -16 * 771 325 69 35 chr1 88947789 88948555 -193245109 - L1M4 LINE L1 -2793 3353 2562 575 349 38 16 chr1 88948656 88949023 -193244641 - L2 LINE L2 -494 2820 2446 232 260 39 0 chr1 88949652 88949729 -193243935 + (TA)n Simple_repeat Simple_repeat 2 81 0 1313 134 36 24 chr1 88950632 88950885 -193242779 - MSTB1 LTR MaLR 0 432 177 954 99 15 8 chr1 88950887 88951018 -193242646 + AluSq/x SINE Alu 1 132 -181 216 67 0 0 chr1 88951020 88951050 -193242614 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 986 157 58 0 chr1 88951050 88951222 -193242442 - MSTB1 LTR MaLR -250 182 1 902 238 35 5 chr1 88951370 88951572 -193242092 + MIR SINE MIR 1 208 -54 328 267 93 0 chr1 88951664 88951750 -193241914 + L2 LINE L2 1821 1914 -1400 746 344 90 22 chr1 88951795 88952249 -193241415 + L2 LINE L2 2144 2628 -686 230 303 15 15 chr1 88952945 88953011 -193240653 + L2 LINE L2 2625 2690 -624 1194 190 15 115 chr1 88953848 88954179 -193239485 + MLT1A1 LTR MaLR 1 298 -67 462 198 90 18 chr1 88954193 88954304 -193239360 + MIR SINE MIR 113 231 -31 29 28 0 0 chr1 88954870 88954906 -193238758 + AT_rich Low_complexity Low_complexity 1 36 0 232 273 31 47 chr1 88955277 88955405 -193238259 - L1M4 LINE L1 -517 5661 5536 496 246 13 125 chr1 88955418 88955723 -193237941 - L1M4 LINE L1 -759 5387 5117 352 82 20 0 chr1 88955860 88955909 -193237755 - MLT1B LTR MaLR 0 390 341 226 346 100 8 chr1 88955923 88956053 -193237611 + L2 LINE L2 2152 2293 -1021 472 68 27 0 chr1 88956098 88956171 -193237493 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 1955 133 41 57 chr1 88956171 88956539 -193237125 + THE1B LTR MaLR 2 363 -1 563 0 15 0 chr1 88956539 88956606 -193237058 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 1051 195 133 50 chr1 88956607 88956946 -193236718 + MLT2B1 LTR ERVL 6 372 -148 756 180 19 31 chr1 88956943 88957104 -193236560 + LTR32 LTR ERVL 310 468 -3 * 879 233 94 45 chr1 88957104 88957478 -193236186 + L2 LINE L2 1361 1752 -1562 553 274 38 6 chr1 88957662 88957819 -193235845 - MIR SINE MIR -97 165 4 24 35 0 53 chr1 88958139 88958196 -193235468 + AT_rich Low_complexity Low_complexity 1 54 0 773 217 74 70 chr1 88958697 88958941 -193234723 + MIR SINE MIR 15 259 -3 30 27 0 0 chr1 88959262 88959299 -193234365 + AT_rich Low_complexity Low_complexity 1 37 0 1570 25 0 25 chr1 88959350 88959546 -193234118 - L1PA4 LINE L1 -1 6154 5964 184 324 63 0 chr1 88959757 88959868 -193233796 - MIR SINE MIR -44 218 101 1282 184 11 8 chr1 88960568 88960834 -193232830 + Tigger1 DNA MER2_type 1 267 -2151 7467 112 15 3 chr1 88960858 88962014 -193231650 + Tigger1 DNA MER2_type 397 1566 -852 8736 199 15 6 chr1 88962032 88964740 -193228924 - L1PA15 LINE L1 -2 7601 4878 5824 262 27 36 chr1 88964743 88969059 -193224605 - L1PA15 LINE L1 -2771 4813 1 3711 151 14 0 chr1 88969067 88969698 -193223966 + Tigger1 DNA MER2_type 1552 2191 -227 1133 204 78 17 chr1 88969701 88969931 -193223733 - AluJo SINE Alu -68 244 1 710 121 17 0 chr1 88969931 88970047 -193223617 + Tigger1 DNA MER2_type 2300 2417 -1 828 258 56 98 chr1 88970216 88970646 -193223018 - L2 LINE L2 -98 3215 2804 21 36 0 0 chr1 88970953 88970981 -193222683 + AT_rich Low_complexity Low_complexity 1 28 0 1978 186 9 33 chr1 88972000 88972040 -193221624 - MLT2D LTR ERVL 0 414 375 420 20 0 0 chr1 88972040 88972089 -193221575 + (CA)n Simple_repeat Simple_repeat 2 50 0 1978 186 9 33 chr1 88972089 88972472 -193221192 - MLT2D LTR ERVL -39 375 1 702 198 71 140 chr1 88973703 88973739 -193219925 + MLT2C2 LTR ERVL 91 128 -336 1861 163 0 3 chr1 88973739 88974065 -193219599 + AluSx SINE Alu 1 325 0 702 198 71 140 chr1 88974065 88974370 -193219294 + MLT2C2 LTR ERVL 128 405 -59 393 75 0 0 chr1 88974370 88974423 -193219241 + (TG)n Simple_repeat Simple_repeat 2 54 0 702 198 71 140 chr1 88974423 88974473 -193219191 + MLT2C2 LTR ERVL 405 457 -7 190 323 15 0 chr1 88974562 88974627 -193219037 - MIR SINE MIR -80 128 63 26 50 0 0 chr1 88975082 88975122 -193218542 + AT_rich Low_complexity Low_complexity 1 40 0 237 289 122 0 chr1 88975528 88975618 -193218046 - L2 LINE L2 0 3272 3172 1017 177 67 4 chr1 88975638 88975892 -193217772 - MER45B DNA AcHobo -60 980 711 1410 301 67 41 chr1 88976001 88976656 -193217008 - MER45C DNA AcHobo -810 143 100 1040 210 80 4 chr1 88976656 88976751 -193216913 + AluJb SINE Alu 27 113 -206 204 67 0 0 chr1 88976751 88976781 -193216883 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1040 210 80 4 chr1 88976781 88976960 -193216704 + AluJb SINE Alu 113 319 0 369 295 48 0 chr1 88976961 88977066 -193216598 - MER45C DNA AcHobo -842 111 2 447 328 78 16 chr1 88977536 88977728 -193215936 + MIR SINE MIR 2 205 -57 1504 96 0 0 chr1 88978079 88978288 -193215376 + L1PA7 LINE L1 5943 6151 -3 390 256 151 33 chr1 88978626 88978835 -193214829 + MIR SINE MIR 16 252 -10 205 171 0 0 chr1 88979146 88979181 -193214483 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr1 88979612 88979640 -193214024 + AT_rich Low_complexity Low_complexity 1 28 0 210 338 0 0 chr1 88979741 88979809 -193213855 - L2 LINE L2 -553 2761 2694 486 298 35 45 chr1 88979832 88980030 -193213634 - MIR SINE MIR -45 217 22 206 284 0 95 chr1 88980037 88980132 -193213532 - L2 LINE L2 -646 2668 2583 1605 179 26 59 chr1 88980296 88980686 -193212978 - MLT1B LTR MaLR -13 377 1 435 283 106 28 chr1 88980687 88981364 -193212300 + L1ME3A LINE L1 4891 5659 -503 5929 35 0 0 chr1 88981369 88982115 -193211549 - L1PA4 LINE L1 -1397 4749 4004 7555 28 1 0 chr1 88982115 88983504 -193210160 + L1PA4 LINE L1 4746 6147 -8 321 300 61 98 chr1 88983544 88983921 -193209743 + L1ME3A LINE L1 5687 6049 -121 2272 200 15 11 chr1 88983932 88984397 -193209267 + MLT1C LTR MaLR 1 467 0 1799 180 7 10 chr1 88984565 88984859 -193208805 - AluJb SINE Alu -19 293 1 245 298 61 38 chr1 88985199 88985330 -193208334 + L2 LINE L2 3180 3313 0 260 257 291 0 chr1 88985961 88986109 -193207555 - L2 LINE L2 0 3313 3123 22488 144 19 15 chr1 88986127 88987350 -193206314 + L1PA8A LINE L1 2 1218 -5243 186 103 0 0 chr1 88987350 88987379 -193206285 + (CAA)n Simple_repeat Simple_repeat 2 30 0 22488 144 19 15 chr1 88987379 88991615 -193202049 + L1PA8A LINE L1 1218 5538 -923 558 52 340 0 chr1 88991608 88991705 -193201959 + L1PA7 LINE L1 6024 6153 -1 * 4418 76 0 0 chr1 88991739 88992305 -193201359 + L1PA8A LINE L1 5791 6356 -90 21 36 0 0 chr1 88992316 88992344 -193201320 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr1 88996905 88996927 -193196737 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 219 359 15 38 chr1 88997082 88997153 -193196511 + MER5A DNA MER1_type 55 124 -65 2246 86 0 0 chr1 88997153 88997456 -193196208 - AluSg SINE Alu 0 303 1 219 359 15 38 chr1 88997456 88997514 -193196150 + MER5A DNA MER1_type 124 182 -7 1435 180 10 17 chr1 88999349 88999638 -193194026 - L1MC2 LINE L1 -11 6333 6047 386 296 8 8 chr1 89000935 89001067 -193192597 + (TA)n Simple_repeat Simple_repeat 2 133 0 580 185 56 0 chr1 89001140 89001283 -193192381 + L1PA16 LINE L1 6030 6178 0 684 251 128 28 chr1 89001684 89002043 -193191621 + L2 LINE L2 2915 3309 -4 663 327 89 16 chr1 89002938 89003253 -193190411 + LTR16A LTR ERVL 113 450 0 294 278 160 18 chr1 89004305 89004474 -193189190 + MIR SINE MIR 56 248 -14 546 195 87 160 chr1 89004886 89005117 -193188547 + MIR SINE MIR 48 261 -1 334 266 0 0 chr1 89005279 89005343 -193188321 - L2 LINE L2 -1 3312 3249 26 64 0 0 chr1 89005726 89005773 -193187891 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr1 89005791 89005828 -193187836 + AT_rich Low_complexity Low_complexity 1 37 0 292 157 20 0 chr1 89006792 89006843 -193186821 - L1ME4a LINE L1 -81 6040 5989 30 27 0 0 chr1 89007027 89007064 -193186600 + AT_rich Low_complexity Low_complexity 1 37 0 492 309 71 42 chr1 89007129 89007465 -193186199 - L1M4 LINE L1 -1010 5136 4791 2449 89 0 0 chr1 89007673 89007975 -193185689 - AluSq SINE Alu -11 302 1 3558 162 55 47 chr1 89008081 89008895 -193184769 - L1MB5 LINE L1 -8 6166 5346 2005 264 108 24 chr1 89009300 89009977 -193183687 - L1ME LINE L1 -5325 745 12 364 339 9 0 chr1 89010067 89010176 -193183488 + L2 LINE L2 3197 3306 -7 237 261 104 26 chr1 89010391 89010506 -193183158 - HAL1 LINE L1 -855 1652 1529 2239 201 9 0 chr1 89012767 89013189 -193180475 - MSTB LTR MaLR 0 426 1 8343 198 18 7 chr1 89013189 89014822 -193178842 - MSTB-int LTR MaLR 0 1651 1 2102 166 11 101 chr1 89014824 89015231 -193178433 - MSTB LTR MaLR -2 424 -18 1943 188 40 38 chr1 89015231 89015656 -193178008 + MSTB LTR MaLR 1 426 0 7883 191 61 3 chr1 89015656 89017216 -193176448 + MSTB-int LTR MaLR 1 1651 0 2391 171 24 9 chr1 89017216 89017636 -193176028 + MSTB LTR MaLR 1 426 0 2102 166 11 101 chr1 89017636 89017690 -193175974 - MSTB LTR MaLR -366 60 3 24 32 0 0 chr1 89017902 89017933 -193175731 + AT_rich Low_complexity Low_complexity 1 31 0 350 232 0 0 chr1 89018687 89018756 -193174908 - MIR SINE MIR -21 241 173 684 314 77 56 chr1 89019763 89020424 -193173240 - L2 LINE L2 0 3313 2637 922 63 0 16 chr1 89020568 89020695 -193172969 + L1PA8 LINE L1 6048 6172 0 489 34 0 0 chr1 89021120 89021179 -193172485 + (CA)n Simple_repeat Simple_repeat 2 60 0 256 301 88 35 chr1 89022101 89022214 -193171450 - L2 LINE L2 -15 3257 3139 235 136 0 0 chr1 89024016 89024060 -193169604 - L1ME4a LINE L1 -17 6104 6061 397 295 46 1 chr1 89024228 89024371 -193169293 - L1M4 LINE L1 -1978 4168 4013 1981 213 89 35 chr1 89024427 89025019 -193168645 - MLT1E2 LTR MaLR -2 624 1 1568 50 0 15 chr1 89025116 89025316 -193168348 - MER107 DNA MER1_type 0 197 1 297 325 17 25 chr1 89025371 89025491 -193168173 + MIR SINE MIR 76 194 -68 780 237 86 41 chr1 89025538 89025876 -193167788 - L1ME4a LINE L1 -225 5896 5544 23 0 0 0 chr1 89026230 89026253 -193167411 + AT_rich Low_complexity Low_complexity 1 23 0 394 304 40 34 chr1 89027232 89027380 -193166284 + MIR3 SINE MIR 58 206 -2 306 0 0 0 chr1 89027459 89027493 -193166171 + (T)n Simple_repeat Simple_repeat 1 34 0 1387 257 71 93 chr1 89027725 89028426 -193165238 - MER21B LTR ERV1 -154 709 24 345 333 41 0 chr1 89030371 89030494 -193163170 - L2 LINE L2 0 3313 3186 252 0 0 0 chr1 89030847 89030875 -193162789 + (A)n Simple_repeat Simple_repeat 1 28 0 2030 119 87 0 chr1 89032290 89032600 -193161064 + MER1B DNA MER1_type 1 337 0 789 218 76 10 chr1 89033108 89033305 -193160359 + MIR SINE MIR 53 262 0 517 307 68 5 chr1 89033345 89033537 -193160127 + MIR SINE MIR 6 209 -53 30 0 0 0 chr1 89034186 89034216 -193159448 + AT_rich Low_complexity Low_complexity 1 30 0 342 292 0 0 chr1 89034917 89035006 -193158658 + L1MC4 LINE L1 6615 6703 -1339 249 222 0 0 chr1 89035007 89035070 -193158594 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 239 174 0 0 chr1 89035072 89035118 -193158546 + L1MC4 LINE L1 6658 6703 -1339 1086 129 0 18 chr1 89035123 89035286 -193158378 - AluSg/x SINE Alu -18 294 135 445 307 260 14 chr1 89035505 89035994 -193157670 + L3 LINE CR1 969 1577 0 308 306 74 16 chr1 89037091 89037333 -193156331 - L1ME4a LINE L1 -12 6109 5854 23 0 0 0 chr1 89038583 89038606 -193155058 + AT_rich Low_complexity Low_complexity 1 23 0 604 313 101 16 chr1 89042538 89042915 -193150749 - MLT1I LTR MaLR 0 409 1 474 307 118 57 chr1 89044051 89044095 -193149569 - L1MC4a LINE L1 -747 5399 5359 2015 143 42 22 chr1 89044095 89044452 -193149212 - THE1B LTR MaLR 0 364 1 474 307 118 57 chr1 89044452 89044540 -193149124 - L1MC4a LINE L1 -787 5359 5278 2014 133 33 7 chr1 89044540 89044840 -193148824 - AluSx SINE Alu -4 308 1 474 307 118 57 chr1 89044840 89045266 -193148398 - L1MC4a LINE L1 -868 5278 5217 2300 117 48 14 chr1 89045266 89045618 -193148046 + THE1B LTR MaLR 1 364 0 474 307 118 57 chr1 89045618 89045930 -193147734 - L1MC4a LINE L1 -929 5217 4925 1911 133 182 6 chr1 89045981 89046343 -193147321 - MSTA LTR MaLR 0 428 3 240 154 0 0 chr1 89046355 89046394 -193147270 - LTR3b LTR ERVK -63 437 399 3068 101 42 0 chr1 89046394 89046819 -193146845 - LTR3b LTR ERVK -57 443 1 1938 182 40 11 chr1 89047078 89047457 -193146207 - MLT1B LTR MaLR 0 390 1 563 218 109 29 chr1 89047553 89047727 -193145937 - MER5A DNA MER1_type -1 188 1 1527 161 38 45 chr1 89047789 89048080 -193145584 - AluJo SINE Alu -23 289 1 4863 190 24 19 chr1 89050968 89052373 -193141291 + L1PA16 LINE L1 4125 5530 -636 842 183 50 162 chr1 89052373 89052733 -193140931 - MER51C LTR ERV1 0 640 329 3960 135 2 14 chr1 89052866 89053511 -193140153 + L1PA16 LINE L1 5529 6165 -1 222 242 137 11 chr1 89053823 89053918 -193139746 - MIR SINE MIR -43 219 113 6098 188 31 136 chr1 89053956 89054036 -193139628 + L1PA15-16 LINE L1 5 92 -6757 1931 147 16 38 chr1 89054036 89054404 -193139260 + THE1B LTR MaLR 5 364 0 6098 188 31 136 chr1 89054404 89056059 -193137605 + L1PA15-16 LINE L1 92 1558 -5291 782 259 5 5 chr1 89056050 89056243 -193137421 + L1PA16 LINE L1 1335 1527 -5322 * 13706 220 19 22 chr1 89056669 89062022 -193131642 + L1PA16 LINE L1 1445 6868 0 490 128 13 0 chr1 89062785 89062863 -193130801 - MADE1 DNA Mariner 0 80 2 2121 130 30 41 chr1 89063878 89064246 -193129418 + THE1B LTR MaLR 1 364 0 2049 145 0 0 chr1 89064854 89065144 -193128520 + AluSx SINE Alu 1 290 -22 255 31 0 0 chr1 89065147 89065179 -193128485 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 14159 29 10 0 chr1 89065442 89067896 -193125768 + L1PA4 LINE L1 3685 6152 -3 1521 164 52 58 chr1 89069411 89069776 -193123888 + MLT1A1 LTR MaLR 1 363 -2 351 259 104 7 chr1 89069915 89070050 -193123614 - MIR SINE MIR -5 257 110 458 290 39 13 chr1 89070413 89070467 -193123197 - MIR SINE MIR -3 259 208 1861 176 102 23 chr1 89070467 89070900 -193122764 + MLT1C LTR MaLR 1 467 0 458 290 39 13 chr1 89070900 89071000 -193122664 - MIR SINE MIR -54 208 101 2468 69 0 3 chr1 89071090 89071393 -193122271 - AluY SINE Alu -9 302 1 201 327 117 54 chr1 89072179 89072384 -193121280 + MIR SINE MIR 21 238 -24 518 307 62 45 chr1 89072473 89072922 -193120742 + L1ME3A LINE L1 5437 5893 -277 288 207 35 0 chr1 89073773 89073831 -193119833 + L2 LINE L2 3245 3304 -9 1081 288 104 19 chr1 89073833 89074456 -193119208 + L2 LINE L2 2603 3284 -29 883 145 0 0 chr1 89075985 89076116 -193117548 - FLAM_C SINE Alu -12 131 1 779 237 93 36 chr1 89076196 89076475 -193117189 - L1MC4 LINE L1 -169 7873 7579 3063 221 91 19 chr1 89076490 89077992 -193115672 - L1ME2 LINE L1 -2 6162 4548 23 54 0 0 chr1 89078733 89078770 -193114894 + AT_rich Low_complexity Low_complexity 1 37 0 1989 132 42 0 chr1 89078947 89079236 -193114428 - AluSx SINE Alu -11 301 1 25 0 0 0 chr1 89080857 89080882 -193112782 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 89081112 89081135 -193112529 + AT_rich Low_complexity Low_complexity 1 23 0 1849 249 35 43 chr1 89081198 89081785 -193111879 - L1MA9 LINE L1 -25 6266 5675 7348 42 0 0 chr1 89081785 89083013 -193110651 - L1PA5 LINE L1 -6 6148 4920 1849 249 35 43 chr1 89083013 89083784 -193109880 - L1MA9 LINE L1 -616 5675 4807 193 357 32 16 chr1 89083844 89083970 -193109694 - L3b LINE CR1 -121 1462 1335 649 241 166 33 chr1 89084026 89084267 -193109397 + L2 LINE L2 2268 2540 -774 1029 199 176 4 chr1 89084274 89084536 -193109128 + L1MC3 LINE L1 6707 7013 -772 180 77 0 0 chr1 89084536 89084562 -193109102 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1718 221 8 34 chr1 89084991 89085090 -193108574 + MLT1A2 LTR MaLR 1 101 -273 596 77 0 0 chr1 89085090 89085168 -193108496 - MADE1 DNA Mariner -2 78 1 1718 221 8 34 chr1 89085168 89085452 -193108212 + MLT1A2 LTR MaLR 101 374 0 1656 240 44 14 chr1 89086372 89086935 -193106729 + L1M4 LINE L1 4181 4760 -1386 889 243 0 0 chr1 89086957 89087130 -193106534 + MER45A DNA AcHobo 6 178 0 1489 237 65 17 chr1 89087134 89087611 -193106053 + L1M4 LINE L1 4826 5325 -821 2200 147 15 42 chr1 89087839 89088240 -193105424 - MLT1B LTR MaLR 0 390 1 507 247 45 51 chr1 89088520 89088698 -193104966 + MLT1J1 LTR MaLR 218 394 -52 343 209 9 61 chr1 89088958 89089073 -193104591 - MIR SINE MIR -104 158 50 373 290 37 0 chr1 89089649 89089756 -193103908 - L2 LINE L2 -1 3312 3202 201 74 0 0 chr1 89090954 89090981 -193102683 + (TCCA)n Simple_repeat Simple_repeat 3 29 0 527 338 64 39 chr1 89091387 89091577 -193102087 + L2 LINE L2 2857 3056 -257 1806 184 55 3 chr1 89091577 89091924 -193101740 - MLT1A1 LTR MaLR 0 365 1 527 338 64 39 chr1 89091924 89091967 -193101697 + L2 LINE L2 3056 3096 -217 736 290 97 62 chr1 89092951 89093354 -193100310 - LTR33 LTR ERVL -86 435 19 420 230 20 0 chr1 89093773 89093873 -193099791 - L1MC4 LINE L1 -1481 6561 6460 708 260 76 98 chr1 89094355 89094805 -193098859 - MLT1J LTR MaLR -31 480 41 1778 141 37 109 chr1 89094929 89095304 -193098360 + MER7A DNA MER2_type 1 346 0 302 284 16 39 chr1 89096059 89096186 -193097478 + LTR16C LTR ERVL 368 491 0 407 250 116 0 chr1 89096329 89096441 -193097223 - Charlie8 DNA MER1_type -2167 250 126 301 312 54 9 chr1 89096703 89096924 -193096740 + L1MB5 LINE L1 4543 4773 -1373 4102 118 9 23 chr1 89096927 89097570 -193096094 + MER51A LTR ERV1 1 634 0 3319 172 89 21 chr1 89097571 89097610 -193096054 + L1MB5 LINE L1 5430 5465 -709 315 0 0 0 chr1 89097610 89097645 -193096019 + (TAA)n Simple_repeat Simple_repeat 2 36 0 3319 172 89 21 chr1 89097645 89098303 -193095361 + L1MB5 LINE L1 5465 6174 0 196 377 25 25 chr1 89098783 89098942 -193094722 + L2 LINE L2 2716 2874 -440 2168 190 20 15 chr1 89099025 89099483 -193094181 - MER65C LTR ERV1 -1 460 1 1896 143 0 0 chr1 89099658 89099931 -193093733 + AluSx SINE Alu 1 273 -39 305 251 106 90 chr1 89100295 89100550 -193093114 + L1MEd LINE L1 844 1102 -5017 1236 198 4 16 chr1 89101128 89101375 -193092289 - AluJb SINE Alu -8 304 61 490 96 0 60 chr1 89101873 89101956 -193091708 - MADE1 DNA Mariner -1 79 2 358 318 63 53 chr1 89102268 89102570 -193091094 + L1MEd LINE L1 2790 3094 -3035 26 0 0 0 chr1 89102740 89102766 -193090898 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 89102862 89102883 -193090781 + AT_rich Low_complexity Low_complexity 1 21 0 226 289 60 12 chr1 89104030 89104113 -193089551 + MIR SINE MIR 90 176 -86 22 70 0 0 chr1 89104114 89104157 -193089507 + AT_rich Low_complexity Low_complexity 1 43 0 351 356 87 33 chr1 89104626 89104960 -193088704 - L2 LINE L2 -778 2536 2185 331 349 40 26 chr1 89106083 89106144 -193087520 + L2 LINE L2 3117 3176 -96 207 0 0 0 chr1 89106144 89106167 -193087497 + (TA)n Simple_repeat Simple_repeat 1 23 0 331 349 40 26 chr1 89106167 89106257 -193087407 + L2 LINE L2 3176 3270 -2 22 0 0 0 chr1 89106466 89106488 -193087176 + AT_rich Low_complexity Low_complexity 1 22 0 1861 190 23 3 chr1 89106906 89107248 -193086416 + MLT1A1 LTR MaLR 13 361 -4 229 83 62 0 chr1 89107298 89107346 -193086318 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 1601 185 0 33 chr1 89107392 89107694 -193085970 - AluJo SINE Alu -14 298 7 2000 105 44 17 chr1 89107963 89108258 -193085406 + AluSq SINE Alu 3 305 -8 1476 183 3 47 chr1 89108262 89108562 -193085102 + AluJb SINE Alu 1 287 -25 540 312 61 19 chr1 89108933 89109196 -193084468 + L2 LINE L2 2263 2536 -778 207 306 82 12 chr1 89109605 89109690 -193083974 + L3 LINE CR1 1303 1393 -184 35126 94 29 11 chr1 89110090 89116118 -193077546 + L1PA6 LINE L1 10 6154 0 2496 276 60 1 chr1 89116120 89116870 -193076794 - L1ME3A LINE L1 -11 6159 5366 862 296 68 12 chr1 89116891 89117405 -193076259 - L1ME3A LINE L1 -841 5305 4763 1716 220 9 0 chr1 89117408 89117744 -193075920 - MLT1A1 LTR MaLR 0 365 27 2179 186 28 16 chr1 89117747 89118183 -193075481 - L1 LINE L1 -1801 4345 3905 * 4792 180 39 3 chr1 89118180 89119870 -193073794 + L1PB4 LINE L1 4394 6142 -14 1061 275 211 0 chr1 89119976 89120445 -193073219 + LTR41 LTR ERVL 5 572 -201 4148 217 70 7 chr1 89120538 89121574 -193072090 - L1MC4a LINE L1 -2 7806 6706 596 221 78 19 chr1 89121584 89121738 -193071926 + MLT1E1 LTR MaLR 492 654 0 298 339 80 31 chr1 89121743 89121967 -193071697 + L2 LINE L2 2695 2929 -385 245 170 0 0 chr1 89122479 89122526 -193071138 + L1MD3 LINE L1 7097 7143 -852 2289 122 10 13 chr1 89122968 89123353 -193070311 - L1MA4 LINE L1 -6 6294 5911 2104 117 0 0 chr1 89123667 89123958 -193069706 - AluSx SINE Alu -21 291 1 3064 134 41 19 chr1 89124177 89124757 -193068907 - L1MA4A LINE L1 -1 6302 5710 1393 194 26 111 chr1 89124844 89124874 -193068790 - L1ME LINE L1 -1833 4296 4265 1549 264 90 48 chr1 89124874 89125443 -193068221 + MLT1E LTR MaLR 1 593 0 1393 194 26 111 chr1 89125443 89125872 -193067792 - L1ME LINE L1 -1864 4265 3876 1838 240 28 58 chr1 89125875 89126341 -193067323 - MLT2B3 LTR ERVL 0 554 103 1735 153 53 13 chr1 89126382 89126682 -193066982 - AluSx SINE Alu 0 312 1 1992 264 25 33 chr1 89126682 89127413 -193066251 - L1 LINE L1 -3213 2933 2209 1315 278 113 31 chr1 89127467 89128334 -193065330 - L1ME LINE L1 -2386 3743 2806 342 305 86 59 chr1 89128446 89128962 -193064702 - L1ME LINE L1 -5011 1108 576 1570 143 4 12 chr1 89129077 89129336 -193064328 - L1PB3 LINE L1 -3 6151 5895 965 228 5 0 chr1 89129841 89130025 -193063639 + MER58A DNA MER1_type 39 223 -1 4599 218 67 16 chr1 89134082 89135317 -193058347 + Charlie1a DNA MER1_type 3 1300 -155 1900 252 36 41 chr1 89135351 89135939 -193057725 + L1M3e LINE L1 466 1050 -6439 3147 254 70 45 chr1 89135964 89137372 -193056292 + L1M3e LINE L1 1996 3438 -4127 307 182 0 0 chr1 89137373 89137428 -193056236 + L1MC4 LINE L1 6649 6703 -1339 802 155 19 0 chr1 89137469 89137624 -193056040 + Charlie1a DNA MER1_type 1294 1451 -4 406 285 45 67 chr1 89138282 89138461 -193055203 + MIR SINE MIR 45 219 -43 395 336 41 7 chr1 89138573 89138719 -193054945 - L2 LINE L2 0 3272 3122 860 293 104 14 chr1 89138720 89139133 -193054531 + HAL1b LINE L1 819 1268 -80 354 232 12 0 chr1 89139618 89139700 -193053964 - L1MD2 LINE L1 -18 6341 6259 3150 221 50 9 chr1 89139906 89140780 -193052884 - L1MD2 LINE L1 -50 6510 5593 2044 258 94 53 chr1 89140816 89142133 -193051531 - L1MD2 LINE L1 -4991 1549 11 234 235 15 29 chr1 89142309 89142377 -193051287 + MIR SINE MIR 86 152 -110 183 162 0 0 chr1 89143562 89143599 -193050065 + (TG)n Simple_repeat Simple_repeat 1 37 0 304 325 65 24 chr1 89144533 89144656 -193049008 + L2 LINE L2 3115 3242 -30 935 145 51 145 chr1 89144731 89144986 -193048678 + AluJb SINE Alu 82 312 0 758 239 48 136 chr1 89145744 89146264 -193047400 - LTR26 LTR ERV1 0 603 124 2072 151 51 42 chr1 89147341 89147773 -193045891 + LTR23 LTR ERV1 2 437 0 21 36 0 0 chr1 89148435 89148463 -193045201 + AT_rich Low_complexity Low_complexity 1 28 0 2298 130 13 16 chr1 89148802 89149178 -193044486 - THE1C LTR MaLR 0 375 1 9968 124 39 5 chr1 89149178 89150706 -193042958 - THE1C-int LTR MaLR 0 1580 1 1694 132 66 14 chr1 89150706 89150994 -193042670 - THE1C LTR MaLR 0 375 73 538 317 132 11 chr1 89151007 89151294 -193042370 + L2 LINE L2 2845 3166 -147 21 0 0 0 chr1 89151381 89151402 -193042262 + AT_rich Low_complexity Low_complexity 1 21 0 226 387 43 30 chr1 89151699 89151934 -193041730 - L2 LINE L2 -556 2758 2521 21 0 0 0 chr1 89152060 89152081 -193041583 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 89152388 89152426 -193041238 + AT_rich Low_complexity Low_complexity 1 38 0 1527 169 10 36 chr1 89153220 89153271 -193040393 - L1MB1 LINE L1 -28 6161 6110 801 179 105 11 chr1 89153271 89153461 -193040203 - MER6B DNA MER2_type 0 210 3 3215 135 37 4 chr1 89153471 89153981 -193039683 - MER1A DNA MER1_type 0 527 1 1527 169 10 36 chr1 89153981 89154225 -193039439 - L1MB1 LINE L1 -88 6101 5863 2118 101 14 3 chr1 89154481 89154769 -193038895 - AluSg SINE Alu -19 291 1 957 281 67 26 chr1 89154977 89155443 -193038221 - L1ME3A LINE L1 -278 5892 5408 29 60 0 0 chr1 89155449 89155499 -193038165 + AT_rich Low_complexity Low_complexity 1 50 0 24 67 0 0 chr1 89156796 89156841 -193036823 + AT_rich Low_complexity Low_complexity 1 45 0 249 226 113 87 chr1 89158151 89158266 -193035398 - MLT1J LTR MaLR -80 431 314 1634 196 36 9 chr1 89158273 89158610 -193035054 + MLT1A1 LTR MaLR 19 364 -1 21 36 0 0 chr1 89158897 89158925 -193034739 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 89159246 89159274 -193034390 + AT_rich Low_complexity Low_complexity 1 28 0 1456 250 135 52 chr1 89159288 89160380 -193033284 - L1MC5 LINE L1 -46 7915 6734 423 313 37 37 chr1 89160383 89160597 -193033067 - L1MC4a LINE L1 -1119 6689 6476 334 283 35 0 chr1 89161194 89161307 -193032357 - L1MB1 LINE L1 -2083 5725 5609 444 236 65 8 chr1 89161552 89161675 -193031989 + L2 LINE L2 3180 3309 -4 503 230 26 40 chr1 89162023 89162175 -193031489 + MIR SINE MIR 71 220 -42 1375 196 51 27 chr1 89163202 89163464 -193030200 + MER2 DNA MER2_type 1 274 -70 1879 128 28 10 chr1 89163464 89163753 -193029911 - AluSq SINE Alu -19 294 1 1375 196 51 27 chr1 89163753 89163826 -193029838 + MER2 DNA MER2_type 274 344 0 281 269 45 96 chr1 89164384 89164540 -193029124 - L2 LINE L2 -556 2758 2611 * 515 267 151 24 chr1 89164534 89164740 -193028924 - MIR SINE MIR 0 262 31 374 280 85 43 chr1 89166724 89166935 -193026729 - MLT1K LTR MaLR -5 583 364 602 247 63 21 chr1 89167074 89167264 -193026400 - L1ME3A LINE L1 -5 6165 5968 3453 150 2 4 chr1 89167910 89168438 -193025226 - MER1A DNA MER1_type 0 527 1 371 208 0 9 chr1 89170680 89170786 -193022878 + GA-rich Low_complexity Low_complexity 3 107 0 241 193 105 0 chr1 89172659 89172716 -193020948 - L1ME3A LINE L1 -234 5936 5874 * 6045 226 16 10 chr1 89172710 89174320 -193019344 - L1PBa LINE L1 -2440 4422 2803 5457 237 42 36 chr1 89174329 89176197 -193017467 - L1PBa LINE L1 -5220 1643 648 3294 186 51 8 chr1 89176197 89176901 -193016763 - MER50 LTR ERV1 0 734 1 5457 237 42 36 chr1 89176901 89177551 -193016113 - L1PBa LINE L1 -6215 648 3 651 192 39 6 chr1 89177586 89177742 -193015922 - L1ME3A LINE L1 -280 5886 5726 * 654 317 67 38 chr1 89177733 89177820 -193015844 + L1ME3A LINE L1 5586 5669 -501 396 0 0 0 chr1 89177820 89177864 -193015800 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 234 0 0 0 chr1 89177866 89177892 -193015772 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 450 0 0 0 chr1 89177891 89177941 -193015723 + (TA)n Simple_repeat Simple_repeat 1 50 0 654 317 67 38 chr1 89177892 89178330 -193015334 + L1ME3A LINE L1 5669 6079 -91 207 162 0 0 chr1 89178360 89178397 -193015267 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 351 311 137 6 chr1 89178460 89178621 -193015043 + MIR SINE MIR 25 206 -56 3027 168 5 53 chr1 89179631 89180213 -193013451 - MLT2B3 LTR ERVL 0 554 1 647 262 59 115 chr1 89180665 89181188 -193012476 - LTR33A LTR ERVL -23 500 7 740 191 0 8 chr1 89181290 89181421 -193012243 + FLAM_C SINE Alu 2 131 -2 21 0 0 0 chr1 89181428 89181449 -193012215 + AT_rich Low_complexity Low_complexity 1 21 0 1088 70 0 0 chr1 89183051 89183193 -193010471 - L1PA6 LINE L1 -363 5791 5650 2673 70 6 8 chr1 89183193 89183547 -193010117 + L1PA6 LINE L1 5795 6150 -4 454 332 19 48 chr1 89184250 89184458 -193009206 + MIR3 SINE MIR 6 207 -1 394 291 70 19 chr1 89185906 89186064 -193007600 - MIR SINE MIR -44 218 53 435 246 82 38 chr1 89187155 89187338 -193006326 - L1ME3A LINE L1 -117 6053 5863 24 0 0 0 chr1 89188690 89188714 -193004950 + AT_rich Low_complexity Low_complexity 1 24 0 2320 97 0 0 chr1 89188776 89189107 -193004557 + AluSc SINE Alu 1 331 0 9995 206 12 3 chr1 89189547 89191661 -193002003 - L1PA13 LINE L1 -1186 5611 3478 4927 41 0 0 chr1 89191682 89192266 -193001398 - L1PA5 LINE L1 -11 6143 5560 3030 116 0 0 chr1 89192269 89192693 -193000971 - L1P LINE L1 -5712 434 11 9906 225 28 39 chr1 89192700 89196225 -192997439 - L1PA13 LINE L1 -3301 3496 1 21 0 0 0 chr1 89197728 89197749 -192995915 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr1 89198191 89198225 -192995439 + AT_rich Low_complexity Low_complexity 1 34 0 1739 98 0 0 chr1 89199138 89199387 -192994277 + AluSx SINE Alu 58 306 0 201 315 46 56 chr1 89199404 89199512 -192994152 + MIR SINE MIR 46 152 -110 843 222 0 6 chr1 89199513 89199684 -192993980 + L1 LINE L1 5 174 -6994 2046 251 48 17 chr1 89199684 89200210 -192993454 + L1 LINE L1 1238 1779 -5389 304 119 0 0 chr1 89200223 89200265 -192993399 + L1 LINE L1 3878 3919 -3248 * 1424 123 30 4 chr1 89200262 89200498 -192993166 + L1MA5A LINE L1 6033 6274 -23 529 164 10 0 chr1 89200503 89200607 -192993057 + L1 LINE L1 3942 4046 -3121 189 74 0 0 chr1 89200645 89200672 -192992992 + (TTATA)n Simple_repeat Simple_repeat 5 31 0 44 88 0 0 chr1 89200672 89200786 -192992878 + AT_rich Low_complexity Low_complexity 1 114 0 5386 224 32 12 chr1 89200791 89202244 -192991420 + L1 LINE L1 4052 5533 -1634 1295 224 42 9 chr1 89202667 89202997 -192990667 - MER58B DNA MER1_type 0 341 1 222 128 0 0 chr1 89204905 89204944 -192988720 + (TG)n Simple_repeat Simple_repeat 1 39 0 785 238 53 45 chr1 89205367 89205611 -192988053 + MLT1A2 LTR MaLR 1 246 -128 1288 252 119 89 chr1 89205715 89206889 -192986775 - L2 LINE L2 -263 3050 1806 399 296 80 45 chr1 89206931 89207085 -192986579 + MIR SINE MIR 46 210 -52 1249 204 12 107 chr1 89207085 89207488 -192986176 - MLT1A1 LTR MaLR 0 365 1 399 296 80 45 chr1 89207488 89207532 -192986132 + MIR SINE MIR 210 251 -11 237 107 0 71 chr1 89207641 89207697 -192985967 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 2148 132 0 0 chr1 89208639 89208970 -192984694 - AluSx SINE Alu 0 331 1 5586 105 28 63 chr1 89210208 89210696 -192982968 - L1PA15 LINE L1 -1 6164 5687 230 158 0 0 chr1 89210696 89210734 -192982930 - tRNA-Phe-TTC tRNA tRNA -38 38 1 5586 105 28 63 chr1 89210734 89211153 -192982511 - L1PA15 LINE L1 -478 5687 5254 358 127 16 0 chr1 89211258 89211321 -192982343 + L1MA9 LINE L1 5421 5484 -807 2855 202 38 46 chr1 89211323 89211567 -192982097 + L1MA9 LINE L1 5553 5797 -515 261 0 0 0 chr1 89211567 89211596 -192982068 + (CA)n Simple_repeat Simple_repeat 1 29 0 2855 202 38 46 chr1 89211596 89212046 -192981618 + L1MA9 LINE L1 5797 6243 -69 2366 94 0 3 chr1 89212046 89212345 -192981319 + AluSp SINE Alu 3 300 -13 2855 202 38 46 chr1 89212345 89212385 -192981279 + L1MA9 LINE L1 6243 6282 -30 180 158 0 0 chr1 89212511 89212549 -192981115 + CT-rich Low_complexity Low_complexity 3 40 0 1122 200 4 0 chr1 89212670 89212900 -192980764 - L1MD3 LINE L1 -5 7990 7760 303 330 25 17 chr1 89213366 89213484 -192980180 + MIR3 SINE MIR 52 170 -38 213 276 38 48 chr1 89213522 89213627 -192980037 - MIR SINE MIR -84 124 21 302 282 32 65 chr1 89217001 89217125 -192976539 + L2 LINE L2 3194 3313 0 492 244 124 142 chr1 89217189 89217795 -192975869 - MLT1G1 LTR MaLR 0 595 1 1596 207 3 7 chr1 89218384 89218679 -192974985 + AluJb SINE Alu 11 304 -8 214 204 20 0 chr1 89219040 89219089 -192974575 + (TGAA)n Simple_repeat Simple_repeat 2 51 0 2231 162 36 7 chr1 89219093 89219507 -192974157 - MSTB LTR MaLR 0 426 1 23 54 0 0 chr1 89219580 89219617 -192974047 + AT_rich Low_complexity Low_complexity 1 37 0 338 225 0 0 chr1 89219896 89219967 -192973697 - MIR SINE MIR -6 256 186 205 204 185 0 chr1 89219983 89220037 -192973627 - L2 LINE L2 -3 3269 3206 215 361 52 0 chr1 89220666 89220763 -192972901 + L2 LINE L2 3212 3313 0 25 65 0 0 chr1 89223293 89223339 -192970325 + AT_rich Low_complexity Low_complexity 1 46 0 262 294 34 103 chr1 89223856 89224002 -192969662 + L2 LINE L2 3136 3271 -1 538 216 39 28 chr1 89225590 89225771 -192967893 - Charlie2 DNA MER1_type -34 2828 2646 245 113 132 0 chr1 89225781 89225834 -192967830 - MLT2B1 LTR ERVL -13 507 448 2133 231 23 47 chr1 89225878 89226044 -192967620 - MLT2B3 LTR ERVL -40 514 345 1298 188 84 59 chr1 89226044 89226400 -192967264 + MLT1A1 LTR MaLR 1 365 0 2133 231 23 47 chr1 89226400 89226760 -192966904 - MLT2B3 LTR ERVL -209 345 1 1859 143 3 21 chr1 89226838 89227124 -192966540 - AluSx SINE Alu -30 282 2 631 222 129 34 chr1 89227128 89227507 -192966157 - Charlie2 DNA MER1_type -259 2603 2189 546 296 35 15 chr1 89227486 89227689 -192965975 - Charlie2 DNA MER1_type -2617 245 39 * 461 266 80 18 chr1 89228379 89228492 -192965172 + MIR SINE MIR 25 144 -118 1629 216 131 59 chr1 89229305 89230040 -192963624 + LTR1B LTR ERV1 1 983 -37 523 292 87 67 chr1 89230189 89230682 -192962982 - L1MEc LINE L1 -5837 559 57 407 174 109 58 chr1 89230688 89230826 -192962838 + MER5C DNA MER1_type 136 280 -44 432 232 261 14 chr1 89230839 89230981 -192962683 - MER5A DNA MER1_type 0 189 13 21 0 0 0 chr1 89231555 89231576 -192962088 + AT_rich Low_complexity Low_complexity 1 21 0 727 61 18 0 chr1 89232492 89232606 -192961058 + (TCTA)n Simple_repeat Simple_repeat 2 117 0 450 249 89 0 chr1 89232746 89232913 -192960751 - MIR SINE MIR 0 262 74 184 262 0 0 chr1 89233128 89233170 -192960494 - L2 LINE L2 -16 3297 3256 775 228 21 21 chr1 89233225 89233414 -192960250 - L1PB4 LINE L1 -2 6154 5966 389 359 14 14 chr1 89233426 89233568 -192960096 - MIR SINE MIR -111 151 10 2377 95 0 7 chr1 89236207 89236513 -192957151 - AluY SINE Alu -7 304 1 318 36 54 0 chr1 89236709 89236765 -192956899 + (CA)n Simple_repeat Simple_repeat 2 60 0 258 191 44 88 chr1 89236820 89236888 -192956776 - MSTB LTR MaLR -242 184 120 799 315 155 15 chr1 89236903 89237297 -192956367 - L2 LINE L2 0 3313 2865 * 894 295 149 36 chr1 89237295 89237539 -192956125 - L2 LINE L2 -626 2688 2473 2305 176 16 28 chr1 89237539 89237970 -192955694 - MSTB LTR MaLR 0 426 1 894 295 149 36 chr1 89237970 89238277 -192955387 - L2 LINE L2 -841 2473 2075 8981 103 1 3 chr1 89239559 89240764 -192952900 + THE1B-int LTR MaLR 379 1580 0 2279 137 5 30 chr1 89240764 89241137 -192952527 + THE1B LTR MaLR 1 364 0 366 315 110 16 chr1 89241141 89241466 -192952198 - MLT1J2 LTR MaLR -56 394 65 1601 94 21 9 chr1 89241537 89241770 -192951894 + AluY SINE Alu 76 311 0 859 101 7 47 chr1 89241862 89242011 -192951653 + L1PA16 LINE L1 6024 6166 0 337 345 60 0 chr1 89242921 89243037 -192950627 - L2 LINE L2 0 3272 3150 241 333 14 0 chr1 89243265 89243334 -192950330 + L2 LINE L2 3203 3272 0 35 41 0 0 chr1 89246231 89246280 -192947384 + AT_rich Low_complexity Low_complexity 1 49 0 201 154 0 0 chr1 89246454 89246493 -192947171 + (CA)n Simple_repeat Simple_repeat 2 40 0 634 346 60 10 chr1 89246557 89246973 -192946691 - L1ME3A LINE L1 -235 5935 5499 191 119 0 71 chr1 89247081 89247123 -192946541 - L2 LINE L2 0 3313 3275 791 204 74 11 chr1 89247130 89247306 -192946358 - LTR32 LTR ERVL -5 466 280 289 159 174 14 chr1 89247324 89247393 -192946271 - LTR32 LTR ERVL -377 94 15 * 339 164 27 68 chr1 89247377 89247450 -192946214 - LTR32 LTR ERVL -387 84 15 518 277 71 49 chr1 89247450 89247674 -192945990 - L2 LINE L2 -36 3277 3049 878 129 38 0 chr1 89247683 89247815 -192945849 - MSTA LTR MaLR -1 427 291 492 316 88 31 chr1 89247831 89248387 -192945277 - L1ME3A LINE L1 -1870 4276 3689 512 108 118 0 chr1 89251331 89251424 -192942240 - MER53 DNA DNA -84 105 2 21 36 0 0 chr1 89252098 89252126 -192941538 + AT_rich Low_complexity Low_complexity 1 28 0 180 373 0 0 chr1 89253629 89253688 -192939976 + L2 LINE L2 2424 2482 -832 2547 106 14 0 chr1 89253698 89254055 -192939609 + THE1B LTR MaLR 3 364 0 10205 105 33 37 chr1 89254055 89255636 -192938028 + THE1B-int LTR MaLR 1 1574 -6 2485 140 0 0 chr1 89255641 89256005 -192937659 + THE1B LTR MaLR 1 364 0 247 328 85 30 chr1 89256006 89256241 -192937423 + L2 LINE L2 2487 2734 -580 2338 114 14 30 chr1 89257061 89257428 -192936236 + THE1B LTR MaLR 4 364 0 7932 106 3 17 chr1 89257429 89257796 -192935868 + THE1B-int LTR MaLR 2 372 -1208 1944 145 3 0 chr1 89257796 89258093 -192935571 - AluSg SINE Alu 0 310 13 7932 106 3 17 chr1 89258093 89258859 -192934805 + THE1B-int LTR MaLR 372 1120 -460 651 347 48 39 chr1 89259415 89260054 -192933610 + L2 LINE L2 1723 2367 -947 2217 109 7 0 chr1 89260370 89260673 -192932991 - AluSc SINE Alu -4 305 1 1057 257 139 8 chr1 89260804 89261170 -192932494 - L1MD2 LINE L1 -221 6138 5725 492 279 8 127 chr1 89261805 89262049 -192931615 - MIR SINE MIR -44 218 4 1179 159 9 47 chr1 89262302 89262534 -192931130 - MSTB LTR MaLR -202 224 2 26 0 0 0 chr1 89263450 89263476 -192930188 + AT_rich Low_complexity Low_complexity 1 26 0 229 309 59 0 chr1 89266003 89266071 -192927593 + L2 LINE L2 355 426 -2888 180 255 0 20 chr1 89266875 89266926 -192926738 + L2 LINE L2 1384 1433 -1881 195 318 103 16 chr1 89267039 89267165 -192926499 - MIR SINE MIR -61 201 65 24 32 0 0 chr1 89267278 89267309 -192926355 + AT_rich Low_complexity Low_complexity 1 31 0 1914 126 0 0 chr1 89268108 89268370 -192925294 + AluSc SINE Alu 1 262 -47 285 51 0 0 chr1 89268370 89268409 -192925255 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 230 229 0 0 chr1 89268962 89269010 -192924654 + (TG)n Simple_repeat Simple_repeat 1 48 0 294 143 0 0 chr1 89269164 89269227 -192924437 + (TA)n Simple_repeat Simple_repeat 1 63 0 269 197 0 0 chr1 89269258 89269324 -192924340 + (TA)n Simple_repeat Simple_repeat 2 67 0 249 155 0 0 chr1 89269351 89269409 -192924255 + (TA)n Simple_repeat Simple_repeat 1 58 0 270 0 0 0 chr1 89271019 89271049 -192922615 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 2861 9 0 0 chr1 89271124 89271442 -192922222 - AluYb8 SINE Alu 0 318 1 24 53 0 0 chr1 89274383 89274421 -192919243 + AT_rich Low_complexity Low_complexity 1 38 0 3226 124 2 2 chr1 89275207 89275692 -192917972 - L1M1 LINE L1 -483 5819 5335 4990 153 36 15 chr1 89275701 89276966 -192916698 - L1M1 LINE L1 -3478 4087 2798 25 0 0 0 chr1 89277009 89277034 -192916630 + AT_rich Low_complexity Low_complexity 1 25 0 342 258 0 11 chr1 89277034 89277127 -192916537 - L1ME3A LINE L1 -200 5970 5879 545 182 41 0 chr1 89277157 89277278 -192916386 - L1PA6 LINE L1 -2 6152 6027 1448 152 0 8 chr1 89277278 89277519 -192916145 - L1M1 LINE L1 -5286 2279 2039 3825 208 85 56 chr1 89277530 89278479 -192915185 + L1PA12 LINE L1 10 986 -6595 3857 129 61 6 chr1 89279181 89279850 -192913814 + L1M1 LINE L1 1773 2478 -5087 498 199 12 48 chr1 89279860 89280026 -192913638 + LTR37A LTR ERV1 235 394 -32 1520 202 3 0 chr1 89280033 89280339 -192913325 - AluSx SINE Alu 0 307 1 223 171 0 0 chr1 89280661 89280702 -192912962 + (CAATT)n Simple_repeat Simple_repeat 3 43 0 26 0 0 0 chr1 89280740 89280766 -192912898 + AT_rich Low_complexity Low_complexity 1 26 0 347 230 35 11 chr1 89281330 89281417 -192912247 - MLT1A1 LTR MaLR -4 361 273 2166 116 35 30 chr1 89281417 89281551 -192912113 - L1PB1 LINE L1 -43 6108 5976 2455 72 0 0 chr1 89281551 89281856 -192911808 - AluSc SINE Alu -4 305 1 2166 116 35 30 chr1 89281856 89282092 -192911572 - L1PB1 LINE L1 -175 5976 5736 1556 78 0 0 chr1 89282090 89282294 -192911370 + L1PB1 LINE L1 5521 5724 -427 * 361 280 48 70 chr1 89282881 89283067 -192910597 + MIR SINE MIR 2 183 -79 24 32 0 0 chr1 89283206 89283237 -192910427 + AT_rich Low_complexity Low_complexity 1 31 0 379 376 75 24 chr1 89283306 89283601 -192910063 - L2 LINE L2 -639 2675 2366 444 277 68 0 chr1 89283619 89283767 -192909897 - L1ME2 LINE L1 -9 6155 5998 742 247 60 25 chr1 89283804 89284252 -192909412 - L1ME2 LINE L1 -706 5468 5003 1398 196 85 82 chr1 89284252 89284640 -192909024 + MSTD LTR MaLR 1 389 -7 2277 258 72 38 chr1 89284645 89285752 -192907912 - L1ME2 LINE L1 -1139 5007 3863 946 226 69 58 chr1 89285772 89286046 -192907618 + MLT1B LTR MaLR 114 390 0 308 296 108 95 chr1 89286133 89286626 -192907038 - L2 LINE L2 0 3313 2815 439 277 58 15 chr1 89286996 89287133 -192906531 + L2 LINE L2 1171 1313 -2001 876 278 24 5 chr1 89287139 89287348 -192906316 + MER58A DNA MER1_type 12 224 0 322 314 58 32 chr1 89287348 89287536 -192906128 + L2 LINE L2 1304 1496 -1818 1395 289 150 66 chr1 89287625 89288620 -192905044 + L2 LINE L2 1711 2788 -526 1161 262 95 32 chr1 89288633 89289099 -192904565 - LTR33 LTR ERVL -13 508 1 333 335 192 14 chr1 89289099 89289506 -192904158 + L2 LINE L2 2790 3280 -33 896 241 25 0 chr1 89289511 89289714 -192903950 + MER82 DNA MER2_type 2 209 -444 21 0 0 0 chr1 89289735 89289756 -192903908 + AT_rich Low_complexity Low_complexity 1 21 0 2070 227 45 9 chr1 89289997 89290437 -192903227 + MER82 DNA MER2_type 198 653 0 3484 286 83 28 chr1 89290959 89293034 -192900630 + L1M4 LINE L1 2140 4328 -1818 283 102 61 0 chr1 89293034 89293083 -192900581 + L1MC3 LINE L1 7049 7100 -685 255 263 0 0 chr1 89293083 89293140 -192900524 + MLT1F1 LTR MaLR 69 125 -442 333 100 0 0 chr1 89293332 89293382 -192900282 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 301 327 0 0 chr1 89294479 89294580 -192899084 + MIR SINE MIR 137 237 -25 2175 114 3 3 chr1 89294583 89294890 -192898774 - AluSc SINE Alu -2 307 1 24 0 0 0 chr1 89294898 89294922 -192898742 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr1 89295056 89295083 -192898581 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr1 89297464 89297499 -192896165 + AT_rich Low_complexity Low_complexity 1 35 0 311 327 0 9 chr1 89297810 89297920 -192895744 - MIR SINE MIR -70 192 84 187 319 89 37 chr1 89297987 89298122 -192895542 - MIR3 SINE MIR -62 146 5 3532 153 20 0 chr1 89298597 89299200 -192894464 + L1PA16 LINE L1 5259 5873 -293 367 280 42 0 chr1 89299795 89299913 -192893751 - MIR SINE MIR -75 187 65 717 222 113 120 chr1 89300593 89301061 -192892603 - MER4C LTR ERV1 0 465 1 1583 145 82 0 chr1 89301194 89301463 -192892201 - AluSx SINE Alu -21 291 1 378 202 4 164 chr1 89302317 89302418 -192891246 - L1M3 LINE L1 -699 5472 5431 1962 107 32 4 chr1 89302418 89302698 -192890966 - AluSq SINE Alu -25 288 1 378 202 4 164 chr1 89302698 89302815 -192890849 - L1M3 LINE L1 -740 5431 5297 611 288 71 94 chr1 89302841 89303265 -192890399 + REP3 LTR ERV 102 515 -47 2248 125 0 0 chr1 89303582 89303885 -192889779 - AluSx SINE Alu -9 303 1 214 186 0 0 chr1 89304284 89304327 -192889337 + (TA)n Simple_repeat Simple_repeat 1 43 0 318 184 8 0 chr1 89305428 89305498 -192888166 - L1PA16 LINE L1 -12 6144 6073 242 409 25 19 chr1 89306237 89306396 -192887268 + MIR3 SINE MIR 35 194 -14 201 182 0 0 chr1 89307375 89307408 -192886256 + (TA)n Simple_repeat Simple_repeat 1 33 0 389 43 0 0 chr1 89307615 89307662 -192886002 + L1P LINE L1 2315 2361 -3785 2216 71 0 0 chr1 89307663 89307992 -192885672 + AluY SINE Alu 1 329 0 23 54 0 0 chr1 89308848 89308885 -192884779 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 89310999 89311022 -192882642 + AT_rich Low_complexity Low_complexity 1 23 0 963 183 25 50 chr1 89311268 89311508 -192882156 - L1MA9 LINE L1 0 6312 6079 528 248 28 0 chr1 89311525 89311666 -192881998 - L1ME3A LINE L1 -5 6165 6021 787 261 25 74 chr1 89311917 89312270 -192881394 - L1M4 LINE L1 -956 5190 4862 1296 211 0 0 chr1 89312270 89312517 -192881147 + L1PB4 LINE L1 5909 6155 -1 787 261 25 74 chr1 89312517 89312607 -192881057 - L1M4 LINE L1 -1284 4862 4769 566 287 142 14 chr1 89312661 89313013 -192880651 - L1M4 LINE L1 -2197 3949 3553 964 224 63 22 chr1 89313110 89313520 -192880144 - L1M4 LINE L1 -2851 3295 2869 5957 41 1 25 chr1 89314370 89315128 -192878536 - L1P LINE L1 -1903 4243 3504 7365 33 4 10 chr1 89315128 89316443 -192877221 + L1PA4 LINE L1 4845 6154 -1 680 258 75 30 chr1 89316622 89317001 -192876663 + MLT1E1 LTR MaLR 1 394 -230 287 256 113 69 chr1 89317378 89317538 -192876126 + LTR50 LTR ERVL 50 216 -579 363 327 150 7 chr1 89317592 89317898 -192875766 + LTR50 LTR ERVL 444 793 -2 2025 163 85 20 chr1 89318107 89318505 -192875159 - MSTB LTR MaLR 0 426 3 544 280 28 0 chr1 89320128 89320271 -192873393 + L2 LINE L2 2523 2669 -645 415 307 18 28 chr1 89320275 89320551 -192873113 + L2 LINE L2 2983 3313 0 519 252 52 9 chr1 89320960 89321075 -192872589 + FLAM_A SINE Alu 1 120 -13 21 0 0 0 chr1 89321188 89321209 -192872455 + AT_rich Low_complexity Low_complexity 1 21 0 274 325 61 78 chr1 89321330 89321675 -192871989 + L2 LINE L2 2932 3270 -2 25 0 0 0 chr1 89322603 89322628 -192871036 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr1 89323154 89323179 -192870485 + (A)n Simple_repeat Simple_repeat 1 25 0 2333 136 81 5 chr1 89324649 89325045 -192868619 + MSTA LTR MaLR 1 426 -2 257 264 83 58 chr1 89325364 89325485 -192868179 + L2 LINE L2 3190 3313 0 828 271 80 58 chr1 89325898 89326275 -192867389 + L2 LINE L2 1447 1831 -1483 326 308 35 41 chr1 89326295 89326467 -192867197 - L1MC5 LINE L1 -49 7912 7742 527 237 0 0 chr1 89326470 89326584 -192867080 + L2 LINE L2 1842 1955 -1359 587 147 0 0 chr1 89326584 89326679 -192866985 + MLT2B1 LTR ERVL 1 95 -425 241 158 0 0 chr1 89326684 89326722 -192866942 + MLT2B1 LTR ERVL 482 519 -1 1537 263 72 89 chr1 89326727 89327589 -192866075 + L2 LINE L2 1955 2801 -513 229 282 14 0 chr1 89327589 89327660 -192866004 + MER94 DNA DNA 1 72 -62 271 252 35 43 chr1 89328024 89328139 -192865525 + MER114 LTR ERV 533 646 -2 656 312 20 5 chr1 89328489 89328688 -192864976 - MIR SINE MIR -14 248 47 514 256 8 15 chr1 89328697 89328830 -192864834 + MLT1A2 LTR MaLR 28 159 -215 845 204 16 32 chr1 89328943 89329129 -192864535 + MLT1A2 LTR MaLR 186 368 -6 1249 247 98 19 chr1 89329282 89329699 -192863965 - MLT1C LTR MaLR -12 455 6 717 262 61 13 chr1 89331475 89331704 -192861960 + MIR SINE MIR 2 241 -21 789 265 47 16 chr1 89332296 89332549 -192861115 + MIR SINE MIR 2 262 0 481 321 153 32 chr1 89332859 89333324 -192860340 + L2 LINE L2 2782 3301 -12 903 87 0 0 chr1 89333357 89333483 -192860181 - L1PA5 LINE L1 -8 6146 6021 302 337 11 0 chr1 89334014 89334103 -192859561 + L2 LINE L2 3160 3249 -23 188 350 48 10 chr1 89334649 89334752 -192858912 - MIR SINE MIR -148 114 8 1055 295 41 30 chr1 89335012 89335405 -192858259 + MLT1I LTR MaLR 13 409 0 474 325 100 13 chr1 89335421 89335652 -192858012 - MIR SINE MIR -5 257 7 599 193 35 0 chr1 89335853 89335967 -192857697 + MLT1D LTR MaLR 1 118 -387 42953 31 21 1 chr1 89335998 89342028 -192851636 - L1PA2 LINE L1 -1 6154 2 1555 161 118 65 chr1 89342032 89342404 -192851260 + MLT1D LTR MaLR 114 505 0 460 296 0 31 chr1 89342774 89342936 -192850728 - MIR SINE MIR 0 262 106 307 348 22 22 chr1 89343041 89343176 -192850488 + MIR SINE MIR 48 182 -80 628 274 171 29 chr1 89343497 89343778 -192849886 + L2 LINE L2 2992 3312 -1 505 266 139 76 chr1 89343787 89344274 -192849390 - L2 LINE L2 -21 3292 2785 309 26 0 0 chr1 89344500 89344538 -192849126 + (CAA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr1 89344667 89344689 -192848975 + AT_rich Low_complexity Low_complexity 1 22 0 236 263 111 10 chr1 89344768 89344867 -192848797 - L2 LINE L2 -47 3266 3158 460 305 16 21 chr1 89344955 89345145 -192848519 + MER5A DNA MER1_type 1 189 0 275 296 87 17 chr1 89347277 89347392 -192846272 + L2 LINE L2 3185 3307 -6 24 0 0 0 chr1 89347483 89347507 -192846157 + AT_rich Low_complexity Low_complexity 1 24 0 384 316 53 90 chr1 89347778 89348135 -192845529 - MLT1K LTR MaLR -10 578 235 879 257 111 62 chr1 89348428 89349008 -192844656 + MLT1G LTR MaLR 7 590 0 210 250 96 0 chr1 89349941 89349993 -192843671 + MIR SINE MIR 70 126 -136 2894 212 42 10 chr1 89351333 89352032 -192841632 - L1MC3 LINE L1 -116 7669 6949 3418 176 15 5 chr1 89352039 89352699 -192840965 - L1MC1 LINE L1 -5 6328 5662 1007 113 7 0 chr1 89352699 89352840 -192840824 - AluSq SINE Alu -19 294 153 2002 195 55 17 chr1 89352845 89353652 -192840012 - L1MC1 LINE L1 -676 5668 4836 8113 182 36 20 chr1 89353656 89354095 -192839569 - L1MC3 LINE L1 -743 5403 4973 4972 177 33 2 chr1 89354095 89354969 -192838695 + MER54A LTR ERVL 1 901 0 8113 182 36 20 chr1 89354969 89356469 -192837195 - L1MC3 LINE L1 -1173 4973 4987 1843 132 7 21 chr1 89356469 89356757 -192836907 - AluSq SINE Alu -17 296 13 8113 182 36 20 chr1 89356757 89356932 -192836732 - L1MC3 LINE L1 -1158 4988 4817 1591 247 40 5 chr1 89357046 89357419 -192836245 + MLT2C2 LTR ERVL 5 390 -74 294 73 0 0 chr1 89357439 89357449 -192836215 + (CA)n Simple_repeat Simple_repeat 1 51 0 294 73 0 0 chr1 89357449 89357490 -192836174 + (CA)n Simple_repeat Simple_repeat 2 42 0 1513 273 70 28 chr1 89357617 89358186 -192835478 - MER77 LTR ERV1 -4 601 41 1759 169 3 3 chr1 89358305 89358601 -192835063 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 89358645 89358666 -192834998 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr1 89360042 89360095 -192833569 + AT_rich Low_complexity Low_complexity 1 53 0 2279 173 28 26 chr1 89360598 89361021 -192832643 - MSTB LTR MaLR 0 426 3 8368 205 5 50 chr1 89361023 89362752 -192830912 - MSTB-int LTR MaLR 0 1651 1 411 138 0 0 chr1 89362752 89362817 -192830847 - MSTB LTR MaLR 0 426 362 1294 178 104 65 chr1 89362817 89363250 -192830414 + LTR7 LTR ERV1 1 450 0 19786 168 15 25 chr1 89363250 89370559 -192823105 + HERVH LTR ERV1 1 7152 -561 779 192 71 25 chr1 89370754 89370952 -192822712 + LTR7 LTR ERV1 244 450 0 1942 199 16 19 chr1 89370952 89371319 -192822345 - MSTB LTR MaLR -60 366 1 21 0 0 0 chr1 89371540 89371561 -192822103 + AT_rich Low_complexity Low_complexity 1 21 0 1059 93 12 12 chr1 89371985 89372120 -192821544 + L1PA7 LINE L1 5994 6131 -23 2243 74 33 3 chr1 89372120 89372419 -192821245 + AluY SINE Alu 3 310 -1 1059 93 12 12 chr1 89372419 89372444 -192821220 + L1PA7 LINE L1 6130 6154 0 888 250 181 52 chr1 89372446 89372970 -192820694 + MLT1G1 LTR MaLR 1 592 -3 184 143 33 22 chr1 89373940 89374031 -192819633 + (TA)n Simple_repeat Simple_repeat 1 92 0 33 43 0 0 chr1 89374176 89374223 -192819441 + AT_rich Low_complexity Low_complexity 1 47 0 687 317 65 4 chr1 89374719 89374965 -192818699 - MIR SINE MIR 0 262 2 187 275 87 14 chr1 89375713 89375782 -192817882 - MIR3 SINE MIR 0 208 135 233 23 68 68 chr1 89376209 89376253 -192817411 + L1ME LINE L1 5774 5817 -304 2027 117 0 13 chr1 89376583 89376883 -192816781 + AluSc SINE Alu 1 296 -13 216 306 0 0 chr1 89377082 89377131 -192816533 + MIR SINE MIR 49 97 -165 1788 212 35 47 chr1 89379062 89379571 -192814093 - MLT1D LTR MaLR -1 504 2 183 80 0 0 chr1 89382239 89382264 -192811400 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 26 0 0 0 chr1 89384040 89384066 -192809598 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 89384561 89384586 -192809078 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 89384675 89384696 -192808968 + AT_rich Low_complexity Low_complexity 1 21 0 405 356 76 51 chr1 89385318 89385792 -192807872 - L2 LINE L2 -1 3312 2827 180 217 133 33 chr1 89386090 89386150 -192807514 + L2 LINE L2 2137 2202 -1112 1498 304 106 35 chr1 89386248 89386991 -192806673 + L2 LINE L2 2151 2946 -368 1675 171 70 66 chr1 89387223 89387679 -192805985 + MER31B LTR ERV1 8 465 -1 1891 155 3 3 chr1 89389401 89389691 -192803973 - AluJo SINE Alu -22 290 1 1095 206 80 47 chr1 89389888 89390227 -192803437 + MLT1E2 LTR MaLR 1 350 -276 2175 124 0 0 chr1 89390378 89390677 -192802987 - AluSg1 SINE Alu -8 301 3 23569 126 13 4 chr1 89390963 89394779 -192798885 + L1PA8A LINE L1 1586 5436 -695 369 170 197 41 chr1 89394952 89395099 -192798565 + MER53 DNA DNA 1 170 -19 640 212 21 180 chr1 89396173 89396456 -192797208 - MIR SINE MIR -16 246 9 845 240 164 80 chr1 89396858 89397433 -192796231 + Charlie7 DNA MER1_type 2 624 -1988 2065 93 0 7 chr1 89397540 89397818 -192795846 + AluSc SINE Alu 1 276 -33 414 0 0 0 chr1 89397821 89397867 -192795797 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 571 194 5 97 chr1 89397956 89398142 -192795522 + Charlie7 DNA MER1_type 934 1102 -1510 276 160 290 99 chr1 89398139 89398501 -192795163 + Charlie7 DNA MER1_type 2181 2611 -1 * 624 303 72 5 chr1 89398563 89398784 -192794880 + MIR SINE MIR 26 261 -1 495 264 92 0 chr1 89399341 89399504 -192794160 - MER58A DNA MER1_type -2 222 45 555 284 0 8 chr1 89399516 89399650 -192794014 + L2 LINE L2 3180 3312 -1 22 35 0 0 chr1 89400631 89400660 -192793004 + AT_rich Low_complexity Low_complexity 1 29 0 313 335 96 70 chr1 89401261 89401729 -192791935 - L2 LINE L2 0 3313 2834 662 222 90 66 chr1 89403097 89403309 -192790355 + MER20 DNA MER1_type 2 218 -1 442 320 92 21 chr1 89403382 89403666 -192789998 + L1ME LINE L1 5483 5786 -335 234 0 0 0 chr1 89405348 89405374 -192788290 + (CA)n Simple_repeat Simple_repeat 2 27 0 892 185 19 6 chr1 89405966 89406123 -192787541 + MER49 LTR ERV1 1 159 -764 821 148 8 0 chr1 89406151 89406279 -192787385 + Charlie3 DNA MER1_type 136 264 -2446 457 133 13 27 chr1 89406284 89406359 -192787305 + Charlie3 DNA MER1_type 2639 2712 0 * 978 120 13 6 chr1 89406359 89406510 -192787154 + MER49 LTR ERV1 151 303 -616 5878 107 19 2 chr1 89406510 89407524 -192786140 + L1PA13 LINE L1 5128 6160 -3 49 43 0 0 chr1 89411112 89411182 -192782482 + AT_rich Low_complexity Low_complexity 1 70 0 752 280 68 86 chr1 89412965 89413433 -192780231 + LTR16B LTR ERVL 5 464 0 28 48 0 0 chr1 89414726 89414768 -192778896 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 89415252 89415277 -192778387 + AT_rich Low_complexity Low_complexity 1 25 0 585 348 185 5 chr1 89415792 89416214 -192777450 - L2 LINE L2 -5 3308 2811 2040 252 115 79 chr1 89417066 89418663 -192775001 + HAL1 LINE L1 638 2292 -215 732 255 27 27 chr1 89418895 89419154 -192774510 + MIR SINE MIR 3 261 -1 209 211 11 63 chr1 89420069 89420164 -192773500 + MER5C DNA MER1_type 214 303 -21 330 332 124 26 chr1 89421492 89421718 -192771946 - L3 LINE CR1 -975 602 355 1744 179 10 3 chr1 89422968 89423265 -192770399 + AluJb SINE Alu 1 299 -13 22 56 0 0 chr1 89423337 89423373 -192770291 + AT_rich Low_complexity Low_complexity 1 36 0 1919 113 22 6 chr1 89423789 89424109 -192769555 + L1PA8A LINE L1 5807 6131 0 2690 19 0 3 chr1 89424410 89424719 -192768945 + AluY SINE Alu 1 308 -3 1986 148 0 0 chr1 89425731 89426034 -192767630 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr1 89429250 89429278 -192764386 + AT_rich Low_complexity Low_complexity 1 28 0 254 259 0 60 chr1 89430375 89430464 -192763200 + MIR SINE MIR 17 99 -109 2134 57 92 3 chr1 89430486 89430768 -192762896 + AluY SINE Alu 1 307 -4 1583 171 4 8 chr1 89431227 89431484 -192762180 + AluJo SINE Alu 13 268 -44 255 61 0 0 chr1 89431497 89431530 -192762134 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1975 101 4 4 chr1 89433478 89433746 -192759918 + AluSx SINE Alu 28 295 -17 180 0 0 0 chr1 89433746 89433766 -192759898 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr1 89434028 89434057 -192759607 + AT_rich Low_complexity Low_complexity 1 29 0 1577 224 32 30 chr1 89435763 89436195 -192757469 + MLT1C LTR MaLR 33 465 -2 360 349 48 7 chr1 89436500 89436646 -192757018 - MIR SINE MIR -21 241 90 32 0 0 0 chr1 89436973 89437005 -192756659 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 89437186 89437224 -192756440 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr1 89438146 89438174 -192755490 + AT_rich Low_complexity Low_complexity 1 28 0 24 91 0 0 chr1 89438389 89438455 -192755209 + AT_rich Low_complexity Low_complexity 1 66 0 25 51 0 0 chr1 89439267 89439306 -192754358 + AT_rich Low_complexity Low_complexity 1 39 0 256 296 35 78 chr1 89439306 89439536 -192754128 - L2 LINE L2 -796 2518 2299 263 359 98 5 chr1 89440183 89440367 -192753297 - MIR SINE MIR -31 231 31 413 329 71 56 chr1 89441923 89442373 -192751291 + HAL1b LINE L1 347 766 -582 1924 128 11 0 chr1 89442435 89442754 -192750910 + AluSq SINE Alu 1 322 0 455 318 150 21 chr1 89443056 89443437 -192750227 + L1M4 LINE L1 2131 2560 -3586 254 231 67 67 chr1 89444591 89444695 -192748969 - HsTC2 DNA Tc2 -1007 891 788 14466 137 22 10 chr1 89445400 89447788 -192745876 + Tigger1 DNA MER2_type 1 2417 -1 341 240 58 50 chr1 89447802 89447923 -192745741 + L1ME LINE L1 5356 5477 -644 1312 204 125 25 chr1 89449194 89449524 -192744140 + MLT1A1 LTR MaLR 1 428 0 914 88 16 0 chr1 89449661 89449786 -192743878 - AluSc SINE Alu -20 289 163 1649 83 0 0 chr1 89449789 89449994 -192743670 - AluSc SINE Alu -89 220 16 283 271 65 93 chr1 89450247 89450354 -192743310 - MER91A DNA MER1_type 0 196 93 2125 117 7 3 chr1 89450449 89450749 -192742915 - AluSq SINE Alu -12 301 1 240 407 29 21 chr1 89451571 89451711 -192741953 + L2 LINE L2 3126 3266 -6 382 291 133 35 chr1 89454238 89454441 -192739223 - MIR SINE MIR -3 259 37 228 35 0 0 chr1 89454563 89454592 -192739072 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1291 205 107 25 chr1 89454688 89455005 -192738659 + MER61A LTR ERV1 1 343 0 2261 132 117 81 chr1 89455007 89455552 -192738112 + MER61A-int LTR ERV1 3 567 -4650 * 25312 101 26 19 chr1 89455529 89456804 -192736860 + MER61A-int LTR ERV1 1393 2658 -2559 2298 152 13 90 chr1 89456804 89457337 -192736327 + LTR22B LTR ERVK 1 492 0 25312 101 26 19 chr1 89457337 89459849 -192733815 + MER61A-int LTR ERV1 2658 5208 -9 667 45 0 0 chr1 89459849 89459937 -192733727 - L1PA4 LINE L1 0 6155 6068 25312 101 26 19 chr1 89459937 89459948 -192733716 + MER61A-int LTR ERV1 5208 5217 0 1254 192 140 26 chr1 89459948 89460256 -192733408 + MER61A LTR ERV1 1 343 0 2002 131 10 3 chr1 89460321 89460626 -192733038 - AluSq SINE Alu -6 307 1 21 36 0 0 chr1 89461172 89461200 -192732464 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 89461943 89461969 -192731695 + AT_rich Low_complexity Low_complexity 1 26 0 32 101 0 0 chr1 89462132 89462241 -192731423 + AT_rich Low_complexity Low_complexity 1 109 0 21 0 0 0 chr1 89462774 89462795 -192730869 + AT_rich Low_complexity Low_complexity 1 21 0 1490 228 63 47 chr1 89463078 89463573 -192730091 - MLT1D LTR MaLR -2 503 1 210 336 86 0 chr1 89464136 89464252 -192729412 + MIR SINE MIR 116 241 -21 26 0 0 0 chr1 89464294 89464320 -192729344 + AT_rich Low_complexity Low_complexity 1 26 0 916 269 96 72 chr1 89464418 89464958 -192728706 + L1MEc LINE L1 64 616 -5780 22 88 0 0 chr1 89464971 89465028 -192728636 + AT_rich Low_complexity Low_complexity 1 57 0 289 238 107 23 chr1 89465098 89465246 -192728418 + MER58 DNA MER1_type 49 2420 0 1803 240 63 35 chr1 89465246 89465901 -192727763 + L1M4 LINE L1 3383 4055 -2091 342 261 67 0 chr1 89465916 89466035 -192727629 + L1ME1 LINE L1 6022 6148 -18 381 288 44 6 chr1 89466060 89466220 -192727444 + L1M4 LINE L1 4657 4822 -1324 195 100 0 0 chr1 89466239 89466269 -192727395 + (TAG)n Simple_repeat Simple_repeat 3 32 0 22 0 0 0 chr1 89466545 89466567 -192727097 + AT_rich Low_complexity Low_complexity 1 22 0 445 340 60 14 chr1 89467213 89467428 -192726236 - MIR SINE MIR -7 255 31 3436 119 24 4 chr1 89468076 89468615 -192725049 + L1PB2 LINE L1 5599 6148 -3 264 77 0 0 chr1 89468738 89468777 -192724887 + (CA)n Simple_repeat Simple_repeat 1 39 0 25 51 0 0 chr1 89468948 89468987 -192724677 + AT_rich Low_complexity Low_complexity 1 39 0 617 351 74 20 chr1 89469264 89469617 -192724047 - L3b LINE CR1 -8 1575 1204 23 33 0 0 chr1 89469827 89469857 -192723807 + AT_rich Low_complexity Low_complexity 1 30 0 286 277 188 0 chr1 89470028 89470140 -192723524 + MIR SINE MIR 129 261 -1 33 66 0 0 chr1 89470359 89470420 -192723244 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr1 89470645 89470667 -192722997 + AT_rich Low_complexity Low_complexity 1 22 0 698 274 52 22 chr1 89470922 89471152 -192722512 - MLT1L LTR MaLR -4 611 375 580 318 108 38 chr1 89471175 89471619 -192722045 + L1MEd LINE L1 12 486 -5633 737 290 104 54 chr1 89471628 89472298 -192721366 + L1MEd LINE L1 536 1239 -4880 339 331 79 17 chr1 89472342 89472520 -192721144 + HAL1 LINE L1 1416 1604 -903 192 178 22 22 chr1 89472693 89472738 -192720926 + MIR SINE MIR 193 237 -25 1173 278 87 68 chr1 89473023 89473983 -192719681 + HAL1b LINE L1 364 1341 -7 3035 131 10 12 chr1 89474275 89474757 -192718907 + L1PA15 LINE L1 5677 6157 -8 1133 201 26 63 chr1 89474913 89475202 -192718462 + AluJo SINE Alu 24 302 0 21 0 0 0 chr1 89476538 89476559 -192717105 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 89477638 89477664 -192716000 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr1 89478020 89478056 -192715608 + AT_rich Low_complexity Low_complexity 1 36 0 193 343 51 29 chr1 89478343 89478480 -192715184 - MIR SINE MIR -2 260 121 21 36 0 0 chr1 89481727 89481755 -192711909 + AT_rich Low_complexity Low_complexity 1 28 0 2265 83 0 17 chr1 89482159 89482459 -192711205 - AluY SINE Alu -16 295 1 271 325 34 8 chr1 89483926 89484043 -192709621 + MER117 DNA MER1_type 6 125 -72 266 233 89 33 chr1 89484295 89484385 -192709279 - MIR3 SINE MIR -1 207 113 21 0 0 0 chr1 89484616 89484637 -192709027 + AT_rich Low_complexity Low_complexity 1 21 0 248 279 67 53 chr1 89485110 89485318 -192708346 - HAL1 LINE L1 -1156 1351 1141 307 251 113 78 chr1 89536112 89536343 -192657321 - HAL1 LINE L1 -1444 1063 825 2263 98 7 0 chr1 89536948 89537254 -192656410 - AluSc SINE Alu -1 308 1 476 274 37 0 chr1 89537436 89537571 -192656093 + MIR SINE MIR 109 248 -14 21 0 0 0 chr1 89537580 89537601 -192656063 + AT_rich Low_complexity Low_complexity 1 21 0 1200 83 0 0 chr1 89538003 89538182 -192655482 + AluY SINE Alu 124 302 0 564 56 0 0 chr1 89538377 89538449 -192655215 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 201 183 28 14 chr1 89539691 89539762 -192653902 + GA-rich Low_complexity Low_complexity 2 73 0 249 33 0 0 chr1 89540052 89540082 -192653582 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 294 233 198 0 chr1 89540798 89540914 -192652750 - MARNA DNA Mariner -44 542 404 295 292 88 23 chr1 89541134 89541305 -192652359 - L2 LINE L2 -527 2787 2606 * 343 309 0 21 chr1 89541258 89541352 -192652312 - MIR SINE MIR -170 92 1 23 33 0 0 chr1 89541462 89541492 -192652172 + AT_rich Low_complexity Low_complexity 1 30 0 913 228 19 28 chr1 89546083 89546298 -192647366 + L1ME1 LINE L1 5937 6149 -17 272 242 23 117 chr1 89546695 89546823 -192646841 - MIR SINE MIR -126 136 21 2154 98 3 0 chr1 89546862 89547147 -192646517 - AluSc SINE Alu -23 286 1 225 0 0 0 chr1 89547273 89547298 -192646366 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr1 89547499 89547521 -192646143 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2065 89 27 3 chr1 89548328 89548621 -192645043 - AluY SINE Alu -11 300 1 225 0 0 0 chr1 89548750 89548775 -192644889 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 299 80 0 0 chr1 89550015 89550065 -192643599 - AluJo SINE Alu 0 308 259 901 121 15 0 chr1 89550170 89550302 -192643362 + AluSc SINE Alu 155 288 -21 253 321 12 12 chr1 89550839 89550923 -192642741 + MIR SINE MIR 31 114 -94 12068 36 4 1 chr1 89552019 89554246 -192639418 - L1PA4 LINE L1 -2 6153 3921 222 257 14 40 chr1 89556636 89556710 -192636954 - L2 LINE L2 0 3272 3201 530 302 69 75 chr1 89557595 89558105 -192635559 + MLT1J LTR MaLR 3 509 -2 183 100 0 0 chr1 89558401 89558431 -192635233 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr1 89559868 89559888 -192633776 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 252 278 22 11 chr1 89559891 89559981 -192633683 + L1ME LINE L1 5564 5654 -467 429 54 0 0 chr1 89559982 89560038 -192633626 + (CA)n Simple_repeat Simple_repeat 2 57 0 1448 192 22 18 chr1 89560132 89560408 -192633256 - AluJo SINE Alu -35 277 1 21 57 0 0 chr1 89561615 89561650 -192632014 + AT_rich Low_complexity Low_complexity 1 35 0 1533 167 65 151 chr1 89561664 89562160 -192631504 + MER21A LTR ERV1 3 455 -476 505 205 90 58 chr1 89562170 89562266 -192631398 + MER21A LTR ERV1 754 858 -73 333 0 0 0 chr1 89562266 89562303 -192631361 + (CA)n Simple_repeat Simple_repeat 2 38 0 505 205 90 58 chr1 89562303 89562362 -192631302 + MER21A LTR ERV1 858 914 -17 2891 151 25 25 chr1 89562488 89563059 -192630605 + L1MA9 LINE L1 5742 6312 0 265 275 43 0 chr1 89563822 89563891 -192629773 - L2 LINE L2 -16 3256 3185 2363 145 47 12 chr1 89564097 89564505 -192629159 + MSTA LTR MaLR 1 422 -6 1307 316 59 33 chr1 89564530 89564643 -192629021 + L2 LINE L2 2396 2505 -808 1679 187 20 0 chr1 89564643 89564942 -192628722 - AluJo SINE Alu -7 305 1 1307 316 59 33 chr1 89564942 89565573 -192628091 + L2 LINE L2 2505 3160 -153 207 194 0 0 chr1 89565574 89565610 -192628054 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 499 316 40 7 chr1 89565617 89565769 -192627895 - MER77 LTR ERV1 -78 527 371 23 0 0 0 chr1 89565770 89565793 -192627871 + AT_rich Low_complexity Low_complexity 1 23 0 395 252 41 49 chr1 89565802 89565925 -192627739 + L2 LINE L2 3192 3313 0 330 259 0 20 chr1 89566052 89566199 -192627465 + (TA)n Simple_repeat Simple_repeat 1 144 0 1967 251 42 36 chr1 89566420 89566949 -192626715 - MER77 LTR ERV1 -7 598 67 1836 128 50 7 chr1 89566968 89567250 -192626414 - AluSg1 SINE Alu -15 294 1 224 189 0 0 chr1 89567675 89567712 -192625952 + polypyrimidine Low_complexity Low_complexity 4 40 0 2030 97 3 88 chr1 89567715 89568055 -192625609 - AluSx SINE Alu 0 312 2 407 208 0 10 chr1 89568452 89568553 -192625111 + CT-rich Low_complexity Low_complexity 2 101 0 1849 129 0 82 chr1 89568555 89568895 -192624769 - AluSx SINE Alu 0 312 1 224 259 74 12 chr1 89568920 89569001 -192624663 + MIR SINE MIR 108 193 -69 270 269 13 13 chr1 89569224 89569302 -192624362 + L1M4 LINE L1 3490 3567 -2579 313 321 69 47 chr1 89569488 89569765 -192623899 + L1M4 LINE L1 3804 4086 -2060 2036 135 0 0 chr1 89569765 89570085 -192623579 + AluSx SINE Alu 1 320 0 1910 133 6 37 chr1 89570169 89570304 -192623360 + AluSx SINE Alu 1 139 -173 2073 141 0 3 chr1 89570304 89570617 -192623047 + AluSx SINE Alu 1 312 0 1910 133 6 37 chr1 89570617 89570803 -192622861 + AluSx SINE Alu 139 312 0 253 312 0 32 chr1 89571340 89571433 -192622231 + GA-rich Low_complexity Low_complexity 1 90 0 1458 226 70 29 chr1 89572046 89572500 -192621164 - L1MA7 LINE L1 0 6291 5808 245 183 117 17 chr1 89572624 89572744 -192620920 - Charlie7 DNA MER1_type -62 2550 2419 305 231 193 42 chr1 89572747 89572959 -192620705 - Charlie7 DNA MER1_type -1901 711 468 195 42 0 0 chr1 89572973 89572997 -192620667 + (CA)n Simple_repeat Simple_repeat 2 25 0 258 32 0 0 chr1 89573006 89573037 -192620627 + (TA)n Simple_repeat Simple_repeat 2 32 0 1426 199 26 18 chr1 89573307 89573579 -192620085 + AluJo SINE Alu 1 274 -38 280 247 31 10 chr1 89574775 89574872 -192618792 - Charlie7 DNA MER1_type -1992 620 522 231 36 0 0 chr1 89574929 89574957 -192618707 + (TC)n Simple_repeat Simple_repeat 2 29 0 387 0 0 0 chr1 89574957 89575000 -192618664 + (CA)n Simple_repeat Simple_repeat 2 44 0 2501 166 36 32 chr1 89575529 89576221 -192617443 + MER51A LTR ERV1 1 625 -9 265 243 142 81 chr1 89576560 89576708 -192616956 + MLT1L LTR MaLR 115 271 -344 414 0 0 0 chr1 89576861 89576907 -192616757 + (TG)n Simple_repeat Simple_repeat 2 47 0 1894 154 123 41 chr1 89576907 89577296 -192616368 - MSTA LTR MaLR -5 423 3 8174 192 32 4 chr1 89577298 89578904 -192614760 - MSTA-int LTR MaLR 0 1651 1 1914 168 144 5 chr1 89578904 89579280 -192614384 - MSTA LTR MaLR 0 428 1 1966 143 4 0 chr1 89579455 89579734 -192613930 + AluSx SINE Alu 9 288 -24 426 296 177 16 chr1 89580138 89580324 -192613340 - MIR SINE MIR -26 236 21 21 0 0 0 chr1 89580745 89580766 -192612898 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr1 89581178 89581218 -192612446 + AT_rich Low_complexity Low_complexity 1 40 0 1352 282 153 21 chr1 89581525 89582191 -192611473 + L2 LINE L2 1555 2308 -1006 369 339 130 17 chr1 89582163 89582393 -192611271 - MIR SINE MIR -1 261 6 * 2510 33 40 0 chr1 89582760 89583059 -192610605 + AluY SINE Alu 1 311 0 459 65 0 0 chr1 89583363 89583425 -192610239 - Alu SINE Alu -248 62 1 22 35 0 0 chr1 89583695 89583724 -192609940 + AT_rich Low_complexity Low_complexity 1 29 0 2031 116 18 0 chr1 89584516 89584801 -192608863 + AluSx SINE Alu 1 290 -22 197 182 0 0 chr1 89586757 89586790 -192606874 + MIR SINE MIR 45 77 -131 294 280 50 0 chr1 89589685 89589785 -192603879 - MER117 DNA MER1_type -3 194 90 * 558 219 50 31 chr1 89589775 89589935 -192603729 + MLT1J1 LTR MaLR 6 168 -278 208 211 0 0 chr1 89590464 89590502 -192603162 + GA-rich Low_complexity Low_complexity 6 43 0 364 326 8 0 chr1 89591064 89591193 -192602471 + CT-rich Low_complexity Low_complexity 2 131 0 212 247 25 74 chr1 89591193 89591274 -192602390 - MIR SINE MIR -59 149 73 1582 190 41 8 chr1 89591625 89591778 -192601886 - L1MA9 LINE L1 0 6312 6166 180 111 0 0 chr1 89591778 89591805 -192601859 + (TG)n Simple_repeat Simple_repeat 2 28 0 1582 190 41 8 chr1 89591805 89592015 -192601649 - L1MA9 LINE L1 -146 6166 5937 180 255 47 66 chr1 89592015 89592121 -192601543 - L2 LINE L2 -881 2433 2330 361 289 63 21 chr1 89592825 89593015 -192600649 - L1M4 LINE L1 -3739 2407 2210 40 59 0 0 chr1 89593106 89593174 -192600490 + AT_rich Low_complexity Low_complexity 1 68 0 201 94 0 0 chr1 89593550 89593582 -192600082 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 473 215 78 94 chr1 89593797 89593877 -192599787 + MLT1A2 LTR MaLR 1 81 -293 1967 87 15 0 chr1 89593877 89594142 -192599522 + AluSp SINE Alu 2 270 -43 473 215 78 94 chr1 89594142 89594252 -192599412 + MLT1A2 LTR MaLR 81 188 -186 230 241 0 0 chr1 89594252 89594306 -192599358 + CT-rich Low_complexity Low_complexity 2 55 0 914 213 16 0 chr1 89594322 89594505 -192599159 + MLT1A2 LTR MaLR 189 374 0 228 71 0 0 chr1 89594928 89594956 -192598708 - MLT2D LTR ERVL 0 414 387 219 88 0 0 chr1 89594968 89595002 -192598662 + (TG)n Simple_repeat Simple_repeat 2 35 0 821 129 8 15 chr1 89595093 89595225 -192598439 - L1MA4 LINE L1 -320 5980 5850 2632 46 0 0 chr1 89595725 89596029 -192597635 - AluY SINE Alu -7 304 1 4579 133 67 4 chr1 89596177 89596969 -192596695 + Tigger3b DNA MER2_type 1 842 -389 192 152 0 0 chr1 89596973 89597006 -192596658 + CT-rich Low_complexity Low_complexity 4 36 0 451 296 123 38 chr1 89597016 89597357 -192596307 - HAL1 LINE L1 -714 1793 1424 584 319 47 31 chr1 89597377 89597631 -192596033 + MIR SINE MIR 3 260 -2 232 294 69 40 chr1 89597631 89597906 -192595758 - HAL1 LINE L1 -1385 1122 840 183 129 0 0 chr1 89599073 89599104 -192594560 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr1 89599111 89599141 -192594523 + AT_rich Low_complexity Low_complexity 1 30 0 1645 149 30 0 chr1 89599346 89599615 -192594049 - AluSx SINE Alu 0 312 36 1987 123 7 3 chr1 89602247 89602540 -192591124 - AluSx SINE Alu -18 294 1 639 296 26 56 chr1 89602598 89602865 -192590799 - MIR SINE MIR -1 261 3 505 295 151 30 chr1 89603703 89604035 -192589629 + MLT1L LTR MaLR 126 497 -118 375 216 11 23 chr1 89604577 89604665 -192588999 - L2 LINE L2 0 3313 3227 293 268 21 21 chr1 89605351 89605448 -192588216 + MER91A DNA MER1_type 8 104 -92 449 317 37 6 chr1 89606594 89606755 -192586909 - MIR SINE MIR -49 213 48 29 28 0 0 chr1 89608965 89609001 -192584663 + AT_rich Low_complexity Low_complexity 1 36 0 527 332 47 49 chr1 89609056 89609529 -192584135 + L2 LINE L2 2323 2794 -520 234 0 0 0 chr1 89610759 89610785 -192582879 + (TG)n Simple_repeat Simple_repeat 2 27 0 539 237 63 116 chr1 89611227 89611590 -192582074 - LTR41 LTR ERVL -7 766 423 673 199 37 42 chr1 89611664 89611855 -192581809 - LTR41 LTR ERVL -583 190 1 24 32 0 0 chr1 89614409 89614440 -192579224 + AT_rich Low_complexity Low_complexity 1 31 0 279 323 35 16 chr1 89615178 89615363 -192578301 + LTR33A LTR ERVL 1 171 -350 276 266 13 0 chr1 89615589 89615668 -192577996 + LTR33A LTR ERVL 440 519 -4 21 0 0 0 chr1 89616020 89616041 -192577623 + AT_rich Low_complexity Low_complexity 1 21 0 231 218 0 0 chr1 89616236 89616291 -192577373 - L1MC4 LINE L1 -1340 6702 6648 22 0 0 0 chr1 89616301 89616323 -192577341 + AT_rich Low_complexity Low_complexity 1 22 0 1871 154 13 13 chr1 89616346 89616657 -192577007 - AluSx SINE Alu -1 311 1 259 288 15 0 chr1 89616770 89616836 -192576828 + L2 LINE L2 3246 3312 -1 522 311 61 29 chr1 89617327 89617703 -192575961 + L1MEd LINE L1 864 1251 -4868 407 348 17 11 chr1 89617749 89617927 -192575737 + L1MEd LINE L1 1312 1490 -4639 403 131 190 44 chr1 89617931 89618068 -192575596 + LTR8A LTR ERV1 1 157 -570 26 0 0 0 chr1 89618069 89618095 -192575569 + AT_rich Low_complexity Low_complexity 1 26 0 208 167 56 0 chr1 89618144 89618198 -192575466 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 1355 193 96 24 chr1 89618242 89618759 -192574905 + LTR8A LTR ERV1 123 726 -1 1546 194 3 14 chr1 89619380 89619700 -192573964 - AluJb SINE Alu 0 317 1 245 387 76 37 chr1 89620265 89620671 -192572993 - L2 LINE L2 -342 2972 2551 333 333 34 23 chr1 89621277 89621454 -192572210 - L1M4 LINE L1 -3404 2742 2564 383 270 69 21 chr1 89621535 89621724 -192571940 - L1M4 LINE L1 -3739 2407 2210 40 73 0 0 chr1 89621766 89621848 -192571816 + AT_rich Low_complexity Low_complexity 1 82 0 201 94 0 0 chr1 89622269 89622301 -192571363 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 297 164 0 18 chr1 89622516 89622571 -192571093 + MLT1A2 LTR MaLR 1 54 -320 1108 148 34 111 chr1 89622596 89622727 -192570937 + AluYb8 SINE Alu 2 99 -219 1022 40 0 0 chr1 89622727 89622851 -192570813 + L1PA3 LINE L1 6029 6152 -3 1108 148 34 111 chr1 89622851 89623016 -192570648 + AluYb8 SINE Alu 99 275 -43 340 181 19 105 chr1 89623022 89623127 -192570537 + MLT1A2 LTR MaLR 82 177 -188 212 245 0 0 chr1 89623127 89623180 -192570484 + CT-rich Low_complexity Low_complexity 2 54 0 921 213 16 0 chr1 89623196 89623379 -192570285 + MLT1A2 LTR MaLR 189 374 0 1510 229 47 17 chr1 89623802 89623835 -192569829 - MLT2D LTR ERVL 0 414 383 360 0 0 0 chr1 89623835 89623875 -192569789 + (GA)n Simple_repeat Simple_repeat 2 41 0 222 37 0 0 chr1 89623874 89623901 -192569763 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 1510 229 47 17 chr1 89623875 89624269 -192569395 - MLT2D LTR ERVL -31 383 1 2848 103 0 15 chr1 89624694 89625101 -192568563 + L1PB2 LINE L1 5621 6021 -130 417 56 50 67 chr1 89625114 89625293 -192568371 + (TA)n Simple_repeat Simple_repeat 1 176 0 379 107 48 50 chr1 89625321 89625850 -192567814 + (TA)n Simple_repeat Simple_repeat 1 528 0 353 87 58 52 chr1 89625861 89626034 -192567630 + (TA)n Simple_repeat Simple_repeat 1 174 0 617 133 25 25 chr1 89626039 89626159 -192567505 + L1PB2 LINE L1 6030 6149 -2 1409 267 110 34 chr1 89626347 89626657 -192567007 - L1MC5 LINE L1 -35 7926 7641 351 0 0 0 chr1 89626657 89626696 -192566968 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 1409 267 110 34 chr1 89626696 89627067 -192566597 - L1MC5 LINE L1 -320 7641 7193 275 340 43 0 chr1 89627198 89627292 -192566372 - L2 LINE L2 0 3272 3175 409 257 0 35 chr1 89627638 89627751 -192565913 - MER31A LTR ERV1 -28 457 349 368 327 87 43 chr1 89627761 89628061 -192565603 - L1ME4a LINE L1 -216 5905 5593 487 325 49 0 chr1 89628347 89628510 -192565154 + MIR SINE MIR 18 188 -74 243 349 90 49 chr1 89629072 89629416 -192564248 + L2 LINE L2 2955 3312 -1 183 80 0 0 chr1 89629431 89629456 -192564208 + (CA)n Simple_repeat Simple_repeat 2 26 0 573 247 42 84 chr1 89630334 89630597 -192563067 + Charlie8 DNA MER1_type 1 252 -2165 507 250 131 30 chr1 89631463 89631631 -192562033 - MIR3 SINE MIR -3 205 21 21 57 0 0 chr1 89632209 89632244 -192561420 + AT_rich Low_complexity Low_complexity 1 35 0 1071 158 28 0 chr1 89634524 89634739 -192558925 - L1MA7 LINE L1 -3 6288 6068 2171 113 0 0 chr1 89635183 89635474 -192558190 - AluSx SINE Alu -18 294 4 1120 78 0 12 chr1 89635602 89635769 -192557895 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 619 267 53 68 chr1 89636586 89637039 -192556625 + L1MC4 LINE L1 7597 8042 0 183 309 18 0 chr1 89637402 89637457 -192556207 + L2 LINE L2 3217 3272 0 23 0 0 0 chr1 89638090 89638113 -192555551 + AT_rich Low_complexity Low_complexity 1 23 0 269 398 70 6 chr1 89638297 89638468 -192555196 - MIR3 SINE MIR -11 197 16 268 367 3 11 chr1 89639206 89639317 -192554347 - MIR SINE MIR -64 144 33 205 245 0 20 chr1 89639487 89639536 -192554128 + GA-rich Low_complexity Low_complexity 2 49 0 21 36 0 0 chr1 89639731 89639759 -192553905 + AT_rich Low_complexity Low_complexity 1 28 0 1053 286 91 36 chr1 89640020 89640677 -192552987 - L2 LINE L2 -5 3308 2607 305 376 43 55 chr1 89640735 89641358 -192552306 + L2 LINE L2 2660 3271 -1 205 149 43 0 chr1 89642244 89642291 -192551373 + (TAA)n Simple_repeat Simple_repeat 1 49 0 5503 177 40 8 chr1 89642333 89644347 -192549317 + L1MA9 LINE L1 4242 6312 0 2445 213 36 51 chr1 89644375 89645061 -192548603 + L1ME1 LINE L1 5486 6161 -5 679 309 82 42 chr1 89645222 89645734 -192547930 + L2 LINE L2 2768 3304 -9 199 303 0 15 chr1 89647838 89647904 -192545760 - L2 LINE L2 -2 3311 3247 1765 171 10 3 chr1 89648948 89649253 -192544411 + AluJb SINE Alu 1 307 -5 226 277 73 58 chr1 89649343 89649480 -192544184 - L1ME LINE L1 -478 5692 5554 202 282 127 55 chr1 89652986 89653096 -192540568 - MIR SINE MIR -25 237 120 718 250 85 49 chr1 89654151 89654626 -192539038 - MER39 LTR ERV1 0 707 10 243 88 0 0 chr1 89654758 89654792 -192538872 + (T)n Simple_repeat Simple_repeat 1 34 0 392 264 187 46 chr1 89655054 89655338 -192538326 + MLT1H LTR MaLR 3 326 -223 349 295 36 9 chr1 89655373 89655485 -192538179 + MLT1H LTR MaLR 433 547 -2 188 315 74 0 chr1 89656607 89656661 -192537003 - MIR SINE MIR -117 145 88 261 332 93 5 chr1 89658351 89658544 -192535120 + L1ME3A LINE L1 3784 3993 -2153 2443 81 3 0 chr1 89658638 89658946 -192534718 - AluSp SINE Alu -4 309 1 22 56 0 0 chr1 89659076 89659112 -192534552 + AT_rich Low_complexity Low_complexity 1 36 0 720 309 65 33 chr1 89659263 89659553 -192534111 + L1ME3A LINE L1 5288 5567 -603 2123 108 0 25 chr1 89659553 89659867 -192533797 - AluSx SINE Alu -6 306 1 720 309 65 33 chr1 89659867 89660207 -192533457 + L1ME3A LINE L1 5567 5938 -232 660 311 38 13 chr1 89660528 89660766 -192532898 + MIR SINE MIR 17 260 -2 372 299 52 22 chr1 89660878 89661012 -192532652 + MIR SINE MIR 110 247 -15 1673 238 28 22 chr1 89661064 89661607 -192532057 + MLT2F LTR ERVL 3 609 -54 259 98 0 0 chr1 89661610 89661651 -192532013 + MER4-int LTR ERV1 1116 1156 -5442 189 268 0 0 chr1 89661654 89661710 -192531954 + (TA)n Simple_repeat Simple_repeat 1 56 0 266 351 15 45 chr1 89662424 89662558 -192531106 - MIR3 SINE MIR -10 198 69 1879 120 45 0 chr1 89663197 89663463 -192530201 + AluSg SINE Alu 1 278 -32 958 58 14 7 chr1 89663469 89663607 -192530057 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 581 323 47 4 chr1 89663837 89664069 -192529595 + MIR SINE MIR 15 256 -6 395 153 0 14 chr1 89665305 89665377 -192528287 - MLT1C LTR MaLR -4 386 316 3770 151 96 56 chr1 89665378 89665696 -192527968 - MER4D LTR ERV1 0 866 562 2174 125 3 3 chr1 89665696 89666000 -192527664 + AluSx SINE Alu 1 304 -8 3770 151 96 56 chr1 89666000 89666550 -192527114 - MER4D LTR ERV1 -304 562 1 1804 196 14 12 chr1 89666571 89666917 -192526747 - MLT1C LTR MaLR -120 347 1 9755 179 13 6 chr1 89667059 89669648 -192524016 - L1PA14 LINE L1 -1 7598 4923 1907 133 30 7 chr1 89669648 89669949 -192523715 + MLT2A2 LTR ERVL 2 309 -144 7132 226 52 49 chr1 89669970 89670558 -192523106 - L1PA14 LINE L1 -4366 3218 2633 2064 120 88 20 chr1 89670558 89670899 -192522765 - THE1B LTR MaLR 0 364 1 7132 226 52 49 chr1 89670899 89673039 -192520625 - L1PA14 LINE L1 -4951 2633 7 2124 114 231 100 chr1 89673042 89674004 -192519660 - pTR5 LTR ERV1 -18 2420 63 1777 257 192 10 chr1 89674159 89674831 -192518833 - LTR50 LTR ERVL 0 795 2 1889 123 37 0 chr1 89675935 89676224 -192517440 - AluSg SINE Alu 0 299 1 272 148 49 12 chr1 89676546 89676627 -192517037 + (TA)n Simple_repeat Simple_repeat 1 84 0 23 0 0 0 chr1 89676698 89676721 -192516943 + AT_rich Low_complexity Low_complexity 1 23 0 1615 210 24 39 chr1 89676953 89677114 -192516550 - MLT1A1 LTR MaLR -7 421 259 2531 50 7 0 chr1 89677114 89677415 -192516249 + AluY SINE Alu 1 303 -8 1615 210 24 39 chr1 89677415 89677622 -192516042 - MLT1A1 LTR MaLR -169 259 1 235 284 18 107 chr1 89679513 89679682 -192513982 - MER5A DNA MER1_type 0 189 36 228 143 0 0 chr1 89684086 89684128 -192509536 + (GA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr1 89685436 89685461 -192508203 + AT_rich Low_complexity Low_complexity 1 25 0 33 43 0 0 chr1 89686220 89686267 -192507397 + AT_rich Low_complexity Low_complexity 1 47 0 2909 13 0 0 chr1 89686348 89686665 -192506999 - AluYb8 SINE Alu -1 317 1 427 288 53 15 chr1 89687481 89687613 -192506051 + MIR SINE MIR 43 179 -83 1683 214 33 0 chr1 89687802 89688138 -192505526 - MER7A DNA MER2_type -1 345 1 24 0 0 0 chr1 89688873 89688897 -192504767 + AT_rich Low_complexity Low_complexity 1 24 0 2814 0 0 0 chr1 89688944 89689244 -192504420 + AluYa5 SINE Alu 1 300 -11 339 311 67 30 chr1 89689279 89689414 -192504250 - MIR3 SINE MIR -53 155 16 23 33 0 0 chr1 89689520 89689550 -192504114 + AT_rich Low_complexity Low_complexity 1 30 0 238 333 0 0 chr1 89691703 89691781 -192501883 + MIR SINE MIR 185 262 0 1992 141 27 35 chr1 89691873 89692249 -192501415 + THE1C LTR MaLR 1 373 -2 764 270 95 5 chr1 89692508 89692719 -192500945 - MIR SINE MIR -18 244 15 184 286 196 30 chr1 89694000 89694133 -192499531 + L2 LINE L2 3153 3307 -6 2125 170 14 16 chr1 89694185 89694621 -192499043 - L1MA4A LINE L1 -9 6294 5860 241 232 12 73 chr1 89694623 89694705 -192498959 - L1M4 LINE L1 -2026 4120 4044 1726 237 77 22 chr1 89694721 89695698 -192497966 + L1ME2 LINE L1 4798 5828 -336 624 263 0 12 chr1 89695715 89695886 -192497778 + L1ME2 LINE L1 5987 6155 -9 2727 219 25 2 chr1 89695929 89696563 -192497101 + L1MB5 LINE L1 5518 6166 -8 1525 257 48 29 chr1 89696719 89697302 -192496362 - L1MEc LINE L1 -4189 2207 1614 1947 142 7 0 chr1 89697303 89697615 -192496049 + AluSx SINE Alu 1 314 0 681 224 141 68 chr1 89697655 89697828 -192495836 + MLT1A1 LTR MaLR 1 160 -205 294 50 0 0 chr1 89697828 89697868 -192495796 + (TG)n Simple_repeat Simple_repeat 1 40 0 681 224 141 68 chr1 89697868 89697993 -192495671 + MLT1A1 LTR MaLR 160 329 -36 1872 133 60 38 chr1 89697993 89698360 -192495304 - THE1C LTR MaLR 0 375 1 681 224 141 68 chr1 89698360 89698400 -192495264 + MLT1A1 LTR MaLR 329 365 0 2146 284 65 37 chr1 89698400 89698829 -192494835 - L1MEc LINE L1 -4802 1594 1179 1713 154 8 0 chr1 89698829 89699096 -192494568 + AluSx SINE Alu 23 291 -21 2146 284 65 37 chr1 89699096 89699950 -192493714 - L1MEc LINE L1 -5217 1179 274 408 226 43 0 chr1 89699983 89700098 -192493566 - L1MEc LINE L1 -6191 205 86 420 20 0 0 chr1 89700131 89700180 -192493484 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2084 115 14 0 chr1 89700182 89700460 -192493204 - AluSg SINE Alu -28 282 1 2048 146 21 8 chr1 89700670 89701022 -192492642 - MLT1A1 LTR MaLR 0 365 8 23 0 0 0 chr1 89701053 89701076 -192492588 + AT_rich Low_complexity Low_complexity 1 23 0 331 256 23 0 chr1 89701141 89701227 -192492437 - L1M4 LINE L1 -1288 4858 4771 21 0 0 0 chr1 89701303 89701324 -192492340 + AT_rich Low_complexity Low_complexity 1 21 0 236 362 197 7 chr1 89701462 89701614 -192492050 - MIR3 SINE MIR -21 187 7 239 252 111 0 chr1 89701885 89702020 -192491644 - L1ME4a LINE L1 -4 6117 5968 35 78 0 0 chr1 89702096 89702173 -192491491 + AT_rich Low_complexity Low_complexity 1 77 0 23 0 0 0 chr1 89702312 89702335 -192491329 + AT_rich Low_complexity Low_complexity 1 23 0 1974 143 64 20 chr1 89702466 89702823 -192490841 + THE1C LTR MaLR 3 375 0 9276 139 30 10 chr1 89702825 89704274 -192489390 + THE1C-int LTR MaLR 3 1479 -101 1983 127 55 25 chr1 89704275 89704636 -192489028 + THE1C LTR MaLR 1 372 -3 38 68 0 0 chr1 89705073 89705146 -192488518 + AT_rich Low_complexity Low_complexity 1 73 0 27 0 0 0 chr1 89705287 89705314 -192488350 + AT_rich Low_complexity Low_complexity 1 27 0 1052 214 11 4 chr1 89705462 89705738 -192487926 - L1M4 LINE L1 -2789 3357 3080 432 312 32 7 chr1 89705838 89705992 -192487672 - MIR SINE MIR -6 256 99 525 340 47 11 chr1 89706198 89706389 -192487275 - MIR SINE MIR -59 203 6 561 352 51 0 chr1 89710875 89711111 -192482553 + MIR SINE MIR 12 259 -3 534 65 195 0 chr1 89711139 89711216 -192482448 - MER11A LTR ERVK -923 343 252 244 264 46 35 chr1 89711288 89711375 -192482289 + LTR67 LTR ERVL 99 186 -371 335 353 16 22 chr1 89711475 89711659 -192482005 + LTR67 LTR ERVL 370 552 -5 4286 153 53 79 chr1 89712146 89713242 -192480422 - MER11C LTR ERVK -4 1067 1 1891 207 68 0 chr1 89713362 89713758 -192479906 + MSTA LTR MaLR 1 423 -5 309 304 28 82 chr1 89715062 89715281 -192478383 - MIR3 SINE MIR -44 164 4 21 0 0 0 chr1 89716616 89716637 -192477027 + AT_rich Low_complexity Low_complexity 1 21 0 296 298 0 0 chr1 89717528 89717632 -192476032 + A-rich Low_complexity Low_complexity 1 104 0 220 343 41 34 chr1 89718661 89718807 -192474857 + L2 LINE L2 1856 2002 -1312 430 323 113 0 chr1 89719163 89719349 -192474315 + L2 LINE L2 3102 3308 -5 4028 206 77 95 chr1 89719672 89720270 -192473394 - L1MC3 LINE L1 -1 7994 7387 1930 142 0 0 chr1 89720270 89720584 -192473080 - AluSx SINE Alu 0 314 1 4028 206 77 95 chr1 89720584 89720823 -192472841 - L1MC3 LINE L1 -608 7387 7145 408 40 0 0 chr1 89720823 89720873 -192472791 + (CA)n Simple_repeat Simple_repeat 1 50 0 4028 206 77 95 chr1 89720873 89720889 -192472775 - L1MC3 LINE L1 -850 7145 7130 1795 151 10 30 chr1 89720889 89721188 -192472476 - AluSx SINE Alu -17 295 3 4028 206 77 95 chr1 89721188 89721519 -192472145 - L1MC3 LINE L1 -865 7130 6794 2021 146 30 28 chr1 89721519 89721882 -192471782 - THE1B LTR MaLR 0 364 1 10575 117 18 0 chr1 89721882 89723431 -192470233 - THE1B-int LTR MaLR 0 1580 4 1825 182 33 30 chr1 89723431 89723793 -192469871 - THE1B LTR MaLR 0 364 1 4028 206 77 95 chr1 89723793 89723879 -192469785 - L1MC3 LINE L1 -1199 6796 6710 180 111 0 0 chr1 89723879 89723906 -192469758 + (CA)n Simple_repeat Simple_repeat 2 28 0 4028 206 77 95 chr1 89723906 89724266 -192469398 - L1MC3 LINE L1 -1285 6710 6345 1837 146 20 17 chr1 89724266 89724423 -192469241 - AluSx SINE Alu -16 296 136 2224 105 3 0 chr1 89724423 89724717 -192468947 - AluSg SINE Alu -15 295 1 1837 146 20 17 chr1 89724717 89724854 -192468810 - AluSx SINE Alu -176 136 1 4028 206 77 95 chr1 89724854 89725539 -192468125 - L1MC3 LINE L1 -1650 6345 5668 243 61 0 0 chr1 89725687 89725720 -192467944 + (TG)n Simple_repeat Simple_repeat 2 34 0 203 379 0 90 chr1 89726885 89727062 -192466602 + L2 LINE L2 3004 3164 -108 551 261 97 6 chr1 89727145 89727321 -192466343 + MIR SINE MIR 65 256 -6 2108 140 0 0 chr1 89727615 89727922 -192465742 + AluSx SINE Alu 6 312 0 234 220 34 0 chr1 89728211 89728270 -192465394 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 32 26 0 0 chr1 89729325 89729364 -192464300 + AT_rich Low_complexity Low_complexity 1 39 0 244 279 63 13 chr1 89729508 89729587 -192464077 + L2 LINE L2 3226 3308 -5 380 292 104 28 chr1 89730508 89730758 -192462906 - L1ME LINE L1 -305 5816 5548 219 318 16 56 chr1 89730780 89730906 -192462758 + L2 LINE L2 3185 3305 -8 382 366 26 42 chr1 89731244 89731550 -192462114 + L2 LINE L2 2477 2777 -537 234 316 132 0 chr1 89731908 89732044 -192461620 + L2 LINE L2 3160 3313 0 233 321 0 0 chr1 89733653 89733709 -192459955 + L2 LINE L2 3201 3256 -16 248 318 50 50 chr1 89733780 89733959 -192459705 + L2 LINE L2 2912 3090 -182 26 50 0 0 chr1 89734158 89734198 -192459466 + AT_rich Low_complexity Low_complexity 1 40 0 270 0 0 0 chr1 89734626 89734656 -192459008 + (TG)n Simple_repeat Simple_repeat 2 31 0 264 149 0 0 chr1 89735862 89735909 -192457755 + (CA)n Simple_repeat Simple_repeat 1 47 0 485 315 32 40 chr1 89736280 89736531 -192457133 + L2 LINE L2 3064 3312 -1 25 51 0 0 chr1 89736927 89736966 -192456698 + AT_rich Low_complexity Low_complexity 1 39 0 364 241 125 0 chr1 89737013 89737125 -192456539 + MIR SINE MIR 11 136 -126 758 291 14 5 chr1 89738298 89738518 -192455146 + MER58A DNA MER1_type 1 222 -2 341 102 17 0 chr1 89738975 89739034 -192454630 + (TC)n Simple_repeat Simple_repeat 2 61 0 228 135 0 0 chr1 89739033 89739070 -192454594 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 210 37 0 0 chr1 89740560 89740587 -192453077 + (T)n Simple_repeat Simple_repeat 1 27 0 593 368 0 0 chr1 89740725 89740877 -192452787 - MER91A DNA MER1_type -36 160 9 184 308 243 0 chr1 89740964 89741071 -192452593 + L3 LINE CR1 997 1129 -448 2008 230 29 83 chr1 89741270 89741696 -192451968 + L1M4 LINE L1 2636 2987 -3159 1224 203 35 74 chr1 89741696 89741728 -192451936 - AluJo SINE Alu -1 301 269 2066 92 4 7 chr1 89741728 89742035 -192451629 + AluSp SINE Alu 13 318 0 1224 203 35 74 chr1 89742035 89742311 -192451353 - AluJo SINE Alu -33 269 4 2008 230 29 83 chr1 89742311 89742807 -192450857 + L1M4 LINE L1 2987 3508 -2638 753 259 54 5 chr1 89743292 89743497 -192450167 - MER20 DNA MER1_type -4 215 1 303 200 31 15 chr1 89743911 89743976 -192449688 - MIR SINE MIR -81 181 116 256 261 14 0 chr1 89745148 89745217 -192448447 + (CATA)n Simple_repeat Simple_repeat 3 72 0 299 339 48 54 chr1 89745490 89745658 -192448006 - MER5A DNA MER1_type -21 168 2 670 248 160 5 chr1 89746475 89746681 -192446983 + MIR SINE MIR 3 240 -22 2231 102 3 0 chr1 89748631 89748934 -192444730 - AluSq SINE Alu -9 304 1 2178 107 0 19 chr1 89750353 89750662 -192443002 - AluSp SINE Alu -10 303 1 635 200 86 8 chr1 89752247 89752410 -192441254 + MER57A LTR ERV1 1 181 -251 1210 194 62 42 chr1 89752415 89752890 -192440774 - LTR1B LTR ERV1 0 826 301 836 151 12 6 chr1 89752889 89753049 -192440615 - LTR1B LTR ERV1 -625 160 1 * 1134 135 193 0 chr1 89753052 89753259 -192440405 + MER57A LTR ERV1 157 403 0 21 36 0 0 chr1 89753508 89753536 -192440128 + AT_rich Low_complexity Low_complexity 1 28 0 331 242 33 50 chr1 89754242 89754362 -192439302 + MLT1K LTR MaLR 429 546 -42 294 329 87 12 chr1 89754422 89754583 -192439081 - MIR SINE MIR -78 184 12 207 390 45 7 chr1 89755601 89755755 -192437909 - L2 LINE L2 -497 2817 2658 22 70 0 0 chr1 89756036 89756079 -192437585 + AT_rich Low_complexity Low_complexity 1 43 0 437 313 127 19 chr1 89756475 89756996 -192436668 + L1M4 LINE L1 4456 5032 -1114 49 71 0 0 chr1 89757020 89757118 -192436546 + AT_rich Low_complexity Low_complexity 1 98 0 205 88 29 0 chr1 89757467 89757501 -192436163 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr1 89757563 89757586 -192436078 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 269 265 15 0 chr1 89757665 89757733 -192435931 - LTR33 LTR ERVL -146 375 307 226 356 39 10 chr1 89757805 89757909 -192435755 - LTR33 LTR ERVL -343 178 72 193 300 79 29 chr1 89758066 89758206 -192435458 - MIR SINE MIR -50 212 66 461 289 61 25 chr1 89758427 89758624 -192435040 + MIR SINE MIR 40 243 -19 180 0 0 0 chr1 89758948 89758968 -192434696 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 365 316 79 0 chr1 89759137 89759251 -192434413 + L2 LINE L2 3187 3309 -4 199 277 0 60 chr1 89759241 89759324 -192434340 + MIR SINE MIR 184 261 -1 * 425 149 0 14 chr1 89759576 89759650 -192434014 + Tigger5 DNA MER2_type 2251 2323 0 28 29 0 0 chr1 89760117 89760152 -192433512 + AT_rich Low_complexity Low_complexity 1 35 0 218 276 53 40 chr1 89761267 89761343 -192432321 + L2 LINE L2 3191 3267 -5 2171 111 47 33 chr1 89763359 89763718 -192429946 + THE1B LTR MaLR 1 364 0 1530 112 9 0 chr1 89763718 89763942 -192429722 + THE1B-int LTR MaLR 1 226 -1354 1092 37 0 0 chr1 89763932 89764066 -192429598 + THE1B-int LTR MaLR 1447 1580 0 * 1919 118 75 34 chr1 89764067 89764416 -192429248 + THE1B LTR MaLR 2 364 0 1065 239 175 4 chr1 89765617 89766129 -192427535 - MLT1E LTR MaLR -5 588 1 209 364 78 50 chr1 89766655 89767193 -192426471 - L2 LINE L2 -542 2772 2220 21 0 0 0 chr1 89767228 89767249 -192426415 + AT_rich Low_complexity Low_complexity 1 21 0 715 181 7 14 chr1 89767259 89767403 -192426261 + FLAM_C SINE Alu 1 143 0 229 360 36 14 chr1 89767597 89767736 -192425928 - L2 LINE L2 -1389 1925 1784 467 292 49 21 chr1 89768286 89768430 -192425234 - L2 LINE L2 -2053 1261 1114 24 32 0 0 chr1 89769044 89769075 -192424589 + AT_rich Low_complexity Low_complexity 1 31 0 687 231 85 21 chr1 89769140 89769748 -192423916 + L1ME1 LINE L1 4502 5274 -872 438 299 70 29 chr1 89769825 89770066 -192423598 + L1ME1 LINE L1 5812 6062 -104 22 70 0 0 chr1 89770566 89770609 -192423055 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr1 89771759 89771784 -192421880 + AT_rich Low_complexity Low_complexity 1 25 0 198 290 48 32 chr1 89771821 89771883 -192421781 + L2 LINE L2 3251 3313 0 13554 26 0 0 chr1 89772426 89774801 -192418863 - L1PA4 LINE L1 0 6155 3781 260 346 75 35 chr1 89776184 89776583 -192417081 + ERVL LTR ERVL 3505 3919 -1845 430 261 17 9 chr1 89776651 89776766 -192416898 + MLT1C LTR MaLR 352 467 0 2357 128 11 11 chr1 89776801 89777176 -192416488 - THE1C LTR MaLR 0 375 1 4526 127 15 6 chr1 89777176 89777853 -192415811 - THE1C-int LTR MaLR 0 1580 898 4101 102 68 75 chr1 89777849 89778568 -192415096 - THE1C-int LTR MaLR -862 718 5 * 2371 114 13 19 chr1 89778573 89778949 -192414715 - THE1C LTR MaLR -1 374 1 385 307 42 30 chr1 89780086 89780252 -192413412 - MIR SINE MIR -11 251 84 243 0 0 0 chr1 89780444 89780471 -192413193 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 270 34 22 chr1 89780506 89780595 -192413069 - L1MC4 LINE L1 -1339 6703 6614 232 212 91 0 chr1 89780596 89780662 -192413002 + MER103 DNA DNA 67 138 -28 202 349 0 30 chr1 89780662 89780728 -192412936 - L2 LINE L2 -8 3305 3242 370 367 106 4 chr1 89780956 89781182 -192412482 - L2 LINE L2 -337 2977 2729 449 345 50 32 chr1 89781258 89781600 -192412064 + L2 LINE L2 2508 2855 -459 21 0 0 0 chr1 89782746 89782767 -192410897 + AT_rich Low_complexity Low_complexity 1 21 0 9494 171 18 5 chr1 89783373 89783638 -192410026 + L1PA13 LINE L1 3470 3730 -2433 1938 124 24 10 chr1 89783638 89783929 -192409735 - AluSx SINE Alu -17 295 1 9494 171 18 5 chr1 89783929 89786378 -192407286 + L1PA13 LINE L1 3730 6161 -2 23 33 0 0 chr1 89788200 89788230 -192405434 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr1 89789164 89789186 -192404478 + (TA)n Simple_repeat Simple_repeat 2 23 0 291 28 0 0 chr1 89789258 89789294 -192404370 + (TG)n Simple_repeat Simple_repeat 2 37 0 704 296 14 28 chr1 89794353 89794569 -192399095 - MIR SINE MIR -4 258 46 1173 148 4 4 chr1 89795493 89795723 -192397941 - L1P4 LINE L1 -665 5498 5269 2597 112 15 17 chr1 89795773 89795853 -192397811 + L1PA10 LINE L1 5755 5834 -334 2205 106 50 39 chr1 89795853 89796213 -192397451 + THE1B LTR MaLR 1 364 0 2597 112 15 17 chr1 89796213 89796543 -192397121 + L1PA10 LINE L1 5834 6164 -4 6086 94 1 21 chr1 89798006 89798910 -192394754 - L1PA13 LINE L1 0 6163 5278 3406 193 26 2 chr1 89799777 89800393 -192393271 - ERVL LTR ERVL -2153 3611 2981 1702 168 7 10 chr1 89800439 89800748 -192392916 - AluSx SINE Alu 0 312 5 249 350 40 0 chr1 89800754 89800854 -192392810 - MIR SINE MIR -112 150 47 183 42 0 0 chr1 89800991 89801015 -192392649 + (TG)n Simple_repeat Simple_repeat 2 25 0 305 363 67 15 chr1 89801090 89801225 -192392439 - L2 LINE L2 -20 3252 3111 310 160 53 40 chr1 89801585 89801660 -192392004 + MLT1G LTR MaLR 14 89 -501 677 101 0 0 chr1 89801763 89801862 -192391802 + AluSc SINE Alu 3 101 -208 1767 73 0 37 chr1 89801863 89802143 -192391521 + AluY SINE Alu 46 316 0 569 306 149 40 chr1 89802311 89802733 -192390931 + LTR16C LTR ERVL 4 471 -20 716 293 63 0 chr1 89802733 89802986 -192390678 + L1M4 LINE L1 3449 3717 -2429 1388 264 36 5 chr1 89803046 89803463 -192390201 + L1M4 LINE L1 3698 4127 -2019 2354 261 98 13 chr1 89803506 89804702 -192388962 + L1ME2 LINE L1 3912 5272 -874 4390 123 169 35 chr1 89804703 89805701 -192387963 - MER11B LTR ERVK 0 1236 1 593 259 124 52 chr1 89805701 89805875 -192387789 + L1ME2 LINE L1 5266 5426 -738 2155 114 3 10 chr1 89805875 89806183 -192387481 + AluSx SINE Alu 1 306 -6 593 259 124 52 chr1 89806183 89806347 -192387317 + L1ME2 LINE L1 5426 5640 -524 656 190 9 0 chr1 89806453 89806569 -192387095 + FLAM_C SINE Alu 11 127 -16 337 238 69 19 chr1 89806575 89806735 -192386929 + L1ME2 LINE L1 5662 5829 -335 715 196 231 64 chr1 89806809 89807121 -192386543 + MLT1A1 LTR MaLR 2 365 0 241 359 61 25 chr1 89807126 89807324 -192386340 - LTR16B LTR ERVL -141 323 119 930 225 70 19 chr1 89807406 89807677 -192385987 + L1ME2 LINE L1 5834 6118 -46 2154 109 13 7 chr1 89807828 89808131 -192385533 - AluSg SINE Alu -5 305 1 255 103 0 0 chr1 89808208 89808247 -192385417 + (TG)n Simple_repeat Simple_repeat 2 40 0 469 114 13 0 chr1 89808281 89808360 -192385304 - MADE1 DNA Mariner 0 80 1 1981 122 27 3 chr1 89808655 89808951 -192384713 - AluSx SINE Alu -9 303 1 2617 176 23 15 chr1 89809229 89809604 -192384060 + MER66B LTR ERV1 7 388 -98 2277 97 3 0 chr1 89809604 89809903 -192383761 + AluSp SINE Alu 1 300 -13 2617 176 23 15 chr1 89809903 89810003 -192383661 + MER66B LTR ERV1 388 486 0 945 292 91 40 chr1 89810031 89810559 -192383105 - HAL1 LINE L1 -549 1958 1404 237 200 0 29 chr1 89810691 89810761 -192382903 - HAL1 LINE L1 -1327 1180 1113 428 333 31 6 chr1 89810789 89810948 -192382716 + L2 LINE L2 1392 1554 -1760 225 159 0 0 chr1 89810949 89810993 -192382671 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 978 207 0 0 chr1 89811280 89811488 -192382176 + AluY SINE Alu 104 311 0 398 353 88 8 chr1 89812785 89813034 -192380630 - L3 LINE CR1 -11 1566 1298 22 0 0 0 chr1 89813970 89813992 -192379672 + AT_rich Low_complexity Low_complexity 1 22 0 1572 173 18 7 chr1 89814271 89814549 -192379115 + AluJo SINE Alu 6 286 -26 21 0 0 0 chr1 89815513 89815534 -192378130 + AT_rich Low_complexity Low_complexity 1 21 0 552 241 0 0 chr1 89816100 89816212 -192377452 + L2 LINE L2 2170 2281 -1033 182 371 71 32 chr1 89816336 89816387 -192377277 + L2 LINE L2 2334 2382 -932 2450 136 3 3 chr1 89816387 89816762 -192376902 - THE1C LTR MaLR 0 375 1 182 371 71 32 chr1 89816762 89816993 -192376671 + L2 LINE L2 2382 2627 -687 464 277 22 54 chr1 89817221 89817405 -192376259 - LTR33 LTR ERVL -302 219 42 427 216 112 40 chr1 89817674 89817799 -192375865 + L2 LINE L2 3180 3313 0 262 285 146 7 chr1 89818157 89818294 -192375370 - MIR SINE MIR -27 235 80 919 327 31 5 chr1 89818514 89818927 -192374737 - L1ME3A LINE L1 -219 5951 5528 1658 197 168 0 chr1 89818928 89819334 -192374330 + MLT1D LTR MaLR 1 474 -31 446 242 77 71 chr1 89819334 89819516 -192374148 + L2 LINE L2 3131 3313 0 227 338 14 0 chr1 89819600 89819671 -192373993 - L1MEd LINE L1 -5487 632 561 215 312 75 11 chr1 89820403 89820496 -192373168 + L2 LINE L2 3160 3258 -55 2741 38 3 9 chr1 89820889 89821230 -192372434 + L1PA4 LINE L1 5797 6135 -20 310 293 23 38 chr1 89822100 89822233 -192371431 + L1ME LINE L1 5529 5659 -462 965 94 50 78 chr1 89822773 89822817 -192370847 - MER30 DNA MER1_type -55 175 131 2160 86 4 0 chr1 89822817 89823131 -192370533 + AluSg SINE Alu 1 315 0 965 94 50 78 chr1 89823131 89823265 -192370399 - MER30 DNA MER1_type -99 131 1 318 318 71 8 chr1 89823429 89823555 -192370109 + MIR SINE MIR 81 214 -48 1388 307 81 27 chr1 89825258 89825889 -192367775 + L2 LINE L2 1812 2476 -838 293 230 18 159 chr1 89826276 89826502 -192367162 - L1ME3A LINE L1 -294 5876 5683 561 248 15 0 chr1 89826744 89826877 -192366787 + LTR16A1 LTR ERVL 323 457 0 551 298 60 28 chr1 89826891 89827210 -192366454 - L1ME3A LINE L1 -546 5624 5296 388 293 105 27 chr1 89827426 89827949 -192365715 - L1ME3A LINE L1 -3183 2963 2400 796 334 40 6 chr1 89827998 89828349 -192365315 + L2 LINE L2 2658 3017 -296 391 339 43 40 chr1 89828888 89829189 -192364475 + LTR16B LTR ERVL 44 345 -119 700 152 9 0 chr1 89829191 89829303 -192364361 - LTR12 LTR ERV1 -250 464 352 261 257 14 0 chr1 89829303 89829377 -192364287 - LTR30 LTR ERV1 -104 618 544 732 102 60 114 chr1 89829377 89829601 -192364063 - LTR12 LTR ERV1 -437 277 1 236 281 14 108 chr1 89829610 89829749 -192363915 + LTR16B LTR ERVL 337 462 -2 187 238 71 0 chr1 89829838 89829880 -192363784 - L2 LINE L2 0 3313 3269 429 176 0 0 chr1 89831648 89831722 -192361942 + AluY SINE Alu 217 290 -21 1287 284 40 3 chr1 89832650 89833077 -192360587 - MLT1H1 LTR MaLR -77 478 1 838 269 211 16 chr1 89833228 89833722 -192359942 - MLT1G LTR MaLR 0 590 1 379 279 20 131 chr1 89833736 89834094 -192359570 - MLT1H1-int LTR MaLR -26 1345 1028 2499 60 0 0 chr1 89834116 89834416 -192359248 + AluY SINE Alu 1 300 -11 277 351 27 11 chr1 89835029 89835217 -192358447 - MLT1H1-int LTR MaLR -848 523 333 254 313 36 18 chr1 89835230 89835396 -192358268 - MLT1H1-int LTR MaLR -1202 169 1 1569 285 53 6 chr1 89835396 89835926 -192357738 - MLT1H1 LTR MaLR 0 555 1 685 295 193 19 chr1 89836356 89836787 -192356877 + MLT1H LTR MaLR 16 521 -28 429 54 0 0 chr1 89837443 89837499 -192356165 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1559 204 13 3 chr1 89837555 89837859 -192355805 + AluJb SINE Alu 1 307 -5 270 0 0 0 chr1 89837873 89837903 -192355761 + (TG)n Simple_repeat Simple_repeat 1 30 0 636 192 54 0 chr1 89837908 89838038 -192355626 - AluJb SINE Alu -39 273 137 22 35 0 0 chr1 89839400 89839429 -192354235 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chr1 89839891 89839928 -192353736 + AT_rich Low_complexity Low_complexity 1 37 0 2411 128 11 0 chr1 89840041 89840401 -192353263 - THE1B LTR MaLR 0 364 1 24 77 0 0 chr1 89841062 89841114 -192352550 + AT_rich Low_complexity Low_complexity 1 52 0 613 273 152 50 chr1 89841553 89841814 -192351850 - MLT1H LTR MaLR -13 536 303 726 218 22 28 chr1 89841814 89841892 -192351772 - MER45A DNA AcHobo -1403 178 101 2254 53 49 0 chr1 89841892 89842177 -192351487 + AluY SINE Alu 1 299 -12 726 218 22 28 chr1 89842177 89842277 -192351387 - MER45A DNA AcHobo -1480 101 1 613 273 152 50 chr1 89842277 89842448 -192351216 - MLT1H LTR MaLR -246 303 1 25 31 0 0 chr1 89842530 89842562 -192351102 + AT_rich Low_complexity Low_complexity 1 32 0 1559 167 0 65 chr1 89843077 89843383 -192350281 - AluJo SINE Alu -18 294 9 2123 141 41 8 chr1 89843818 89844180 -192349484 - THE1C LTR MaLR -1 374 1 561 13 39 0 chr1 89845180 89845258 -192348406 + (TAGA)n Simple_repeat Simple_repeat 3 83 0 502 196 20 20 chr1 89845350 89845452 -192348212 + AluJo SINE Alu 1 102 -210 692 109 0 70 chr1 89845502 89845789 -192347875 + (TAGA)n Simple_repeat Simple_repeat 1 266 0 909 170 12 18 chr1 89845796 89845967 -192347697 + AluJo SINE Alu 102 271 -41 350 173 13 0 chr1 89845989 89846064 -192347600 + GA-rich Low_complexity Low_complexity 4 79 0 2219 109 3 0 chr1 89846303 89846606 -192347058 + AluSx SINE Alu 1 304 -8 621 165 0 0 chr1 89848104 89848213 -192345451 - L1MB1 LINE L1 -7 6161 6053 735 236 71 74 chr1 89848220 89848530 -192345134 + L1ME3 LINE L1 5851 6159 -3 441 0 0 0 chr1 89849054 89849103 -192344561 + (CA)n Simple_repeat Simple_repeat 2 50 0 1545 288 73 13 chr1 89850208 89850822 -192342842 - MER20B DNA MER1_type -132 651 1 857 234 98 14 chr1 89851242 89851456 -192342208 - MIR SINE MIR -28 234 3 353 282 86 34 chr1 89851909 89852026 -192341638 + L2 LINE L2 3150 3272 0 32 67 0 0 chr1 89852424 89852484 -192341180 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 89852761 89852782 -192340882 + AT_rich Low_complexity Low_complexity 1 21 0 1436 196 57 0 chr1 89852958 89853078 -192340586 + AluJb SINE Alu 1 113 -199 225 0 0 0 chr1 89853078 89853103 -192340561 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1436 196 57 0 chr1 89853103 89853247 -192340417 + AluJb SINE Alu 113 280 -32 528 16 0 0 chr1 89853247 89853308 -192340356 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 380 322 41 29 chr1 89854673 89854844 -192338820 + MIR SINE MIR 76 248 -14 212 211 19 19 chr1 89854948 89855000 -192338664 + (CATATA)n Simple_repeat Simple_repeat 1 52 0 39 74 0 0 chr1 89855726 89855807 -192337857 + AT_rich Low_complexity Low_complexity 1 81 0 333 298 119 33 chr1 89855894 89856045 -192337619 - MIR SINE MIR -98 164 1 24 0 0 0 chr1 89857000 89857024 -192336640 + AT_rich Low_complexity Low_complexity 1 24 0 220 311 84 9 chr1 89858422 89858584 -192335080 - MIR SINE MIR -21 241 13 346 194 0 0 chr1 89858589 89858656 -192335008 + L1PA16 LINE L1 6084 6150 -16 269 284 42 0 chr1 89863497 89863592 -192330072 + GA-rich Low_complexity Low_complexity 4 102 0 2172 143 92 8 chr1 89863620 89864011 -192329653 - MSTA LTR MaLR 0 428 5 24 0 0 0 chr1 89864451 89864475 -192329189 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 89867011 89867039 -192326625 + AT_rich Low_complexity Low_complexity 1 28 0 315 320 27 68 chr1 89867521 89867740 -192325924 - MIR SINE MIR 0 262 53 210 192 0 19 chr1 89867770 89867822 -192325842 + (TTA)n Simple_repeat Simple_repeat 1 51 0 2830 158 47 42 chr1 89868453 89869004 -192324660 + MLT2B3 LTR ERVL 1 554 0 246 62 0 0 chr1 89870011 89870043 -192323621 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr1 89870604 89870625 -192323039 + AT_rich Low_complexity Low_complexity 1 21 0 223 358 122 0 chr1 89870763 89870911 -192322753 + MIR SINE MIR 90 255 -7 2324 252 28 39 chr1 89871401 89872151 -192321513 - L1ME1 LINE L1 -1 6559 5818 1105 184 51 0 chr1 89872153 89872370 -192321294 - L1MD1 LINE L1 -1 6241 6014 1015 237 48 41 chr1 89872375 89872792 -192320872 - L1ME1 LINE L1 -4040 2500 2081 2549 251 87 20 chr1 89873011 89874074 -192319590 - L1ME1 LINE L1 -4411 2129 996 304 325 80 40 chr1 89874185 89874336 -192319328 - L1ME1 LINE L1 -5980 560 404 378 248 67 0 chr1 89875032 89875137 -192318527 - L1ME1 LINE L1 -6235 486 375 709 208 26 0 chr1 89875289 89875443 -192318221 + L1MD3 LINE L1 7824 7981 -14 244 274 32 0 chr1 89875744 89875806 -192317858 + MIR3 SINE MIR 99 162 -46 203 182 0 0 chr1 89875845 89875878 -192317786 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 183 114 0 0 chr1 89876749 89876784 -192316880 + (A)n Simple_repeat Simple_repeat 1 35 0 2200 104 3 0 chr1 89876792 89877091 -192316573 + AluSc SINE Alu 1 300 -9 309 278 93 33 chr1 89879733 89879884 -192313780 - MLT1J LTR MaLR -217 294 135 472 300 7 27 chr1 89880028 89880178 -192313486 + L2 LINE L2 3152 3298 -15 27 29 0 0 chr1 89880658 89880692 -192312972 + AT_rich Low_complexity Low_complexity 1 34 0 1659 191 15 3 chr1 89880737 89881078 -192312586 - L1PA16 LINE L1 -16 6852 6508 198 0 0 0 chr1 89881489 89881511 -192312153 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr1 89881517 89881539 -192312125 + AT_rich Low_complexity Low_complexity 1 22 0 9856 210 26 12 chr1 89881590 89884318 -192309346 - L1PA16 LINE L1 -574 6294 3528 3740 226 95 76 chr1 89884307 89884353 -192309311 - L1PA16 LINE L1 -3714 3134 3090 * 312 27 0 0 chr1 89884353 89884390 -192309274 + (TG)n Simple_repeat Simple_repeat 2 38 0 3740 226 95 76 chr1 89884390 89885972 -192307692 - L1PA16 LINE L1 -3758 3090 1445 26 30 0 0 chr1 89886789 89886822 -192306842 + AT_rich Low_complexity Low_complexity 1 33 0 245 167 19 0 chr1 89889701 89889755 -192303909 + GA-rich Low_complexity Low_complexity 1 55 0 207 263 0 18 chr1 89889965 89890022 -192303642 + CT-rich Low_complexity Low_complexity 2 57 0 22 0 0 0 chr1 89892534 89892556 -192301108 + AT_rich Low_complexity Low_complexity 1 22 0 347 375 25 20 chr1 89892937 89893137 -192300527 - L3 LINE CR1 -913 664 464 2259 95 17 0 chr1 89893431 89893727 -192299937 + AluY SINE Alu 1 301 -10 197 238 24 0 chr1 89893776 89893818 -192299846 - MIR3 SINE MIR -52 156 114 183 42 0 0 chr1 89894770 89894794 -192298870 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr1 89995508 89995538 -192198126 + AT_rich Low_complexity Low_complexity 1 30 0 183 156 0 0 chr1 89995545 89995577 -192198087 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 1740 147 26 93 chr1 89995651 89996038 -192197626 + THE1B LTR MaLR 1 361 -3 304 176 61 27 chr1 89996357 89996505 -192197159 + (TA)n Simple_repeat Simple_repeat 1 153 0 575 265 89 78 chr1 89996718 89997065 -192196599 + L2 LINE L2 2899 3249 -64 5730 54 0 5 chr1 89997204 89998511 -192195153 - L1P LINE L1 -4495 1651 224 2132 193 45 5 chr1 89998613 89999039 -192194625 + ERVL LTR ERVL 2621 3063 -2701 272 182 0 0 chr1 89999117 89999172 -192194492 - L1 LINE L1 -1821 4325 4271 7466 173 20 14 chr1 89999173 90000805 -192192859 + ERVL LTR ERVL 3069 4751 -1013 2316 80 17 0 chr1 90000951 90001252 -192192412 - AluY SINE Alu -5 306 1 258 125 0 18 chr1 90001255 90001311 -192192353 - MER5C DNA MER1_type -203 121 67 1362 192 56 122 chr1 90001483 90001983 -192191681 + MLT1C LTR MaLR 1 467 0 184 231 0 77 chr1 90001988 90002053 -192191611 - MER5B DNA MER1_type -45 133 74 22 35 0 0 chr1 90002070 90002099 -192191565 + AT_rich Low_complexity Low_complexity 1 29 0 514 256 31 14 chr1 90003810 90003954 -192189710 + MLT1J LTR MaLR 37 146 -300 441 275 0 23 chr1 90004354 90004485 -192189179 - MIR SINE MIR -14 248 121 180 0 0 0 chr1 90005973 90005993 -192187671 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 682 163 9 17 chr1 90006121 90006348 -192187316 + GA-rich Low_complexity Low_complexity 1 225 0 1975 208 19 12 chr1 90006701 90007183 -192186481 + L1MB8 LINE L1 4887 5371 -775 3832 168 26 59 chr1 90008474 90008530 -192185134 + L1MB8 LINE L1 5345 5401 -777 2004 132 4 0 chr1 90008530 90008837 -192184827 + AluSp SINE Alu 1 283 -30 3832 168 26 59 chr1 90008837 90009625 -192184039 + L1MB8 LINE L1 5401 6162 -16 815 270 199 17 chr1 90011058 90011465 -192182199 + L2 LINE L2 2833 3313 0 243 301 26 18 chr1 90011507 90011620 -192182044 - MIR SINE MIR -70 192 79 218 220 0 20 chr1 90012368 90012418 -192181246 + CT-rich Low_complexity Low_complexity 4 52 0 23634 31 1 0 chr1 90013437 90016314 -192177350 - L1P LINE L1 -1606 4540 1660 5198 77 35 0 chr1 90016414 90017138 -192176526 + L1PA12 LINE L1 5419 6167 -1 27 62 0 0 chr1 90017138 90017186 -192176478 + AT_rich Low_complexity Low_complexity 1 48 0 29 0 0 0 chr1 90018006 90018035 -192175629 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr1 90018256 90018294 -192175370 + AT_rich Low_complexity Low_complexity 1 38 0 710 264 39 6 chr1 90019567 90019745 -192173919 - MER20 DNA MER1_type 0 219 36 283 326 67 0 chr1 90021031 90021120 -192172544 - L2 LINE L2 -5 3267 3173 218 349 60 12 chr1 90021639 90021722 -192171942 - MIR SINE MIR -146 116 30 1829 174 3 0 chr1 90022072 90022360 -192171304 + AluJb SINE Alu 6 294 -18 1700 103 0 0 chr1 90022718 90022961 -192170703 - HERVH LTR ERV1 -7470 243 1 2234 113 96 17 chr1 90022963 90023378 -192170286 - LTR7 LTR ERV1 -2 448 1 200 167 0 48 chr1 90023394 90023436 -192170228 + (CAAT)n Simple_repeat Simple_repeat 3 42 0 2153 246 36 8 chr1 90023660 90024160 -192169504 + LTR40a LTR ERVL 6 519 0 22 56 0 0 chr1 90026975 90027011 -192166653 + AT_rich Low_complexity Low_complexity 1 36 0 2042 131 3 0 chr1 90027323 90027614 -192166050 - AluSx SINE Alu -19 293 2 24 0 0 0 chr1 90029586 90029610 -192164054 + AT_rich Low_complexity Low_complexity 1 24 0 547 247 50 0 chr1 90031187 90031331 -192162333 + MER45A DNA AcHobo 9 171 -7 481 278 33 86 chr1 90031750 90031995 -192161669 + MIR SINE MIR 18 249 -13 330 26 0 0 chr1 90032946 90032985 -192160679 + (CA)n Simple_repeat Simple_repeat 1 39 0 307 316 149 0 chr1 90033841 90034015 -192159649 - MIR SINE MIR -10 252 53 2084 116 7 0 chr1 90035969 90036262 -192157402 - AluSx SINE Alu -15 297 3 42 57 0 0 chr1 90037153 90037223 -192156441 + AT_rich Low_complexity Low_complexity 1 70 0 390 314 79 38 chr1 90038126 90038467 -192155197 + L2 LINE L2 1937 2291 -1023 191 374 63 46 chr1 90038607 90038955 -192154709 + L2 LINE L2 2621 2974 -340 225 0 0 0 chr1 90040158 90040183 -192153481 + (TTA)n Simple_repeat Simple_repeat 3 27 0 7470 26 4 0 chr1 90040183 90041669 -192151995 - L1PA3 LINE L1 -18 6137 4654 1985 125 0 36 chr1 90042181 90042486 -192151178 - AluSg SINE Alu -16 294 1 258 195 35 0 chr1 90042679 90042766 -192150898 + (CATA)n Simple_repeat Simple_repeat 3 92 0 1268 186 124 13 chr1 90042792 90043099 -192150565 - MLT2C1 LTR ERVL -56 341 1 917 116 23 12 chr1 90043133 90043306 -192150358 + T-rich Low_complexity Low_complexity 3 177 0 375 195 35 11 chr1 90043307 90043394 -192150270 + CT-rich Low_complexity Low_complexity 3 91 0 234 0 0 0 chr1 90045107 90045133 -192148531 + (TTA)n Simple_repeat Simple_repeat 2 27 0 567 337 91 29 chr1 90045768 90046186 -192147478 + L2 LINE L2 2829 3272 0 433 265 177 16 chr1 90048372 90048671 -192144993 - MLT1F LTR MaLR 0 595 270 266 309 23 24 chr1 90048882 90049058 -192144606 - MLT1H1 LTR MaLR -336 194 1 294 29 0 0 chr1 90049216 90049251 -192144413 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr1 90049451 90049481 -192144183 + AT_rich Low_complexity Low_complexity 1 30 0 2255 128 21 24 chr1 90049834 90050210 -192143454 - L1PB4 LINE L1 -6 6150 5776 628 139 8 23 chr1 90050240 90050369 -192143295 - L1PB4 LINE L1 -363 5793 5667 273 332 46 41 chr1 90051163 90051359 -192142305 + L2 LINE L2 3117 3313 0 21 36 0 0 chr1 90052730 90052758 -192140906 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 90052996 90053025 -192140639 + AT_rich Low_complexity Low_complexity 1 29 0 188 327 0 0 chr1 90054766 90054821 -192138843 + L2 LINE L2 3218 3272 0 472 228 43 15 chr1 90055042 90055173 -192138491 + MLT1C LTR MaLR 317 486 -19 184 329 51 13 chr1 90055519 90055598 -192138066 + MIR SINE MIR 23 104 -158 1229 242 107 3 chr1 90055620 90055946 -192137718 - MLT1A1 LTR MaLR -1 364 5 584 180 148 0 chr1 90055953 90056081 -192137583 - MLT1A1-int LTR MaLR -1 1734 1588 10393 196 23 8 chr1 90056084 90058026 -192135638 + L1M1 LINE L1 14 1985 -5580 2339 246 16 11 chr1 90058027 90058642 -192135022 + L1M1 LINE L1 3741 4358 -3207 8966 167 18 10 chr1 90058743 90060489 -192133175 + L1M1 LINE L1 4851 6607 -958 2333 84 0 3 chr1 90060757 90061055 -192132609 + AluSg SINE Alu 1 297 -13 201 74 0 0 chr1 90061127 90061154 -192132510 + (TA)n Simple_repeat Simple_repeat 1 27 0 1241 159 18 7 chr1 90061584 90061860 -192131804 + L1 LINE L1 3074 3352 -2794 1443 143 45 0 chr1 90061860 90062084 -192131580 - LTR12 LTR ERV1 -1 713 480 293 296 10 0 chr1 90062085 90062183 -192131481 - LTR30 LTR ERV1 -80 642 544 4798 139 130 44 chr1 90062187 90063194 -192130470 - pTR5 LTR ERV1 -417 2021 928 302 313 104 25 chr1 90063646 90063809 -192129855 - MIR SINE MIR -55 207 32 274 331 35 14 chr1 90065648 90065790 -192127874 + L2 LINE L2 1780 1924 -1390 1058 359 98 24 chr1 90065790 90066660 -192127004 + L2 LINE L2 2040 2973 -341 250 346 8 53 chr1 90066865 90066998 -192126666 + L2 LINE L2 3186 3312 -1 2553 108 11 3 chr1 90067030 90067391 -192126273 + THE1B LTR MaLR 1 364 0 2673 127 5 5 chr1 90067500 90067901 -192125763 + MSTA-int LTR MaLR 1249 1649 -2 2342 143 36 12 chr1 90067903 90068321 -192125343 + MSTA LTR MaLR 1 428 0 268 424 11 5 chr1 90068344 90068528 -192125136 - L2 LINE L2 -217 3055 2871 886 166 0 7 chr1 90068579 90068730 -192124934 + MLT1A1 LTR MaLR 12 161 -204 417 204 92 0 chr1 90068762 90068860 -192124804 + MLT1A1 LTR MaLR 259 365 0 1261 131 36 5 chr1 90068924 90069146 -192124518 - L1MA5 LINE L1 -1 6299 6071 1746 155 97 29 chr1 90069146 90069456 -192124208 + MER1B DNA MER1_type 3 333 -6 565 192 0 8 chr1 90069462 90069582 -192124082 - L1MA5 LINE L1 -221 6079 5961 346 155 0 14 chr1 90069586 90069657 -192124007 + L1M2b LINE L1 211 280 -6929 23 68 0 0 chr1 90070311 90070355 -192123309 + AT_rich Low_complexity Low_complexity 1 44 0 611 112 0 31 chr1 90071851 90071949 -192121715 - AluSc SINE Alu -14 295 201 349 250 115 73 chr1 90071993 90072185 -192121479 - MIR SINE MIR -62 200 1 388 210 0 50 chr1 90072326 90072355 -192121309 + MER53 DNA DNA 2 31 -158 2315 68 48 0 chr1 90072355 90072647 -192121017 + AluSg SINE Alu 1 306 -4 388 210 0 50 chr1 90072647 90072717 -192120947 + MER53 DNA DNA 31 96 -93 226 295 0 0 chr1 90072895 90072956 -192120708 + MER53 DNA DNA 129 189 0 286 205 77 0 chr1 90073493 90073571 -192120093 + MIR SINE MIR 118 201 -61 1738 139 55 76 chr1 90074041 90074423 -192119241 - THE1C LTR MaLR -1 374 1 4749 120 61 12 chr1 90074424 90075174 -192118490 - THE1C-int LTR MaLR -1 1579 793 1557 125 250 3 chr1 90075275 90075587 -192118077 - THE1C-int LTR MaLR -1016 564 176 225 94 0 0 chr1 90075587 90075619 -192118045 - MSTA LTR MaLR -396 32 1 420 307 51 15 chr1 90075683 90075820 -192117844 + MIR SINE MIR 43 184 -78 1140 203 141 86 chr1 90075999 90076476 -192117188 - MLT1D LTR MaLR 0 505 3 320 343 132 57 chr1 90076646 90077411 -192116253 - L2 LINE L2 -4 3309 2476 2807 163 186 5 chr1 90077501 90078098 -192115566 - MER39 LTR ERV1 -2 705 1 238 301 137 34 chr1 90078199 90078345 -192115319 - MIR3 SINE MIR -14 194 34 591 307 102 0 chr1 90078493 90078776 -192114888 + LTR16C LTR ERVL 180 491 0 2193 54 4 11 chr1 90078879 90079155 -192114509 + AluY SINE Alu 29 302 -9 296 222 111 91 chr1 90080594 90080693 -192112971 - L2 LINE L2 -31 3282 3182 652 340 118 20 chr1 90080709 90081100 -192112564 - L2 LINE L2 -437 2877 2449 183 308 13 51 chr1 90081597 90081675 -192111989 + L2 LINE L2 3198 3272 0 27 0 0 0 chr1 90083528 90083555 -192110109 + AT_rich Low_complexity Low_complexity 1 27 0 282 337 82 67 chr1 90083569 90083824 -192109840 + L2 LINE L2 3005 3263 -9 2061 84 44 0 chr1 90083936 90084211 -192109453 + AluY SINE Alu 1 287 -24 468 51 0 0 chr1 90084211 90084270 -192109394 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 219 36 0 0 chr1 90084550 90084578 -192109086 + (CA)n Simple_repeat Simple_repeat 2 29 0 245 410 40 0 chr1 90085413 90085513 -192108151 - MIR SINE MIR -131 131 28 187 300 90 10 chr1 90087567 90087667 -192105997 - MIR SINE MIR -31 231 124 24 32 0 0 chr1 90087949 90087980 -192105684 + AT_rich Low_complexity Low_complexity 1 31 0 826 341 79 43 chr1 90088959 90089657 -192104007 + L2 LINE L2 1772 2494 -820 2523 161 13 13 chr1 90089667 90090114 -192103550 - Tigger3b DNA MER2_type 0 1232 786 1292 87 0 0 chr1 90090114 90090275 -192103389 - AluSp SINE Alu -16 297 137 3842 160 27 37 chr1 90090293 90091044 -192102620 - Tigger3b DNA MER2_type -488 743 1 192 255 0 0 chr1 90091152 90091199 -192102465 + L2 LINE L2 2670 2716 -598 1078 280 77 48 chr1 90091205 90091662 -192102002 - LTR16C LTR ERVL -4 487 18 3907 189 8 51 chr1 90091796 90093228 -192100436 - L1P5 LINE L1 -475 5681 4320 1807 194 19 0 chr1 90093227 90093587 -192100077 + L1P5 LINE L1 3959 4325 -1821 * 2069 92 4 4 chr1 90095785 90096079 -192097585 - AluSx SINE Alu 0 306 13 7585 22 5 4 chr1 90096254 90097743 -192095921 - L1PA4 LINE L1 -4 6151 4661 314 337 59 18 chr1 90098769 90098938 -192094726 + MER5A DNA MER1_type 2 177 -12 277 314 57 32 chr1 90099130 90099254 -192094410 - MIR SINE MIR -63 145 19 25 0 0 0 chr1 90100336 90100361 -192093303 + AT_rich Low_complexity Low_complexity 1 25 0 930 207 86 31 chr1 90100955 90101300 -192092364 - MSTD LTR MaLR 0 396 1 249 309 31 10 chr1 90101370 90101467 -192092197 + MIR SINE MIR 73 171 -91 1611 256 36 16 chr1 90101487 90102014 -192091650 + MLT1E2 LTR MaLR 26 626 0 257 340 62 48 chr1 90102072 90102281 -192091383 - L2 LINE L2 -4 3309 3098 1726 205 47 39 chr1 90102660 90103069 -192090595 + MLT2D LTR ERVL 1 412 -2 1519 198 14 3 chr1 90103194 90103487 -192090177 + AluJb SINE Alu 1 296 -16 3605 199 3 3 chr1 90104003 90104642 -192089022 + ERVL LTR ERVL 1649 2287 -3477 1483 205 102 104 chr1 90104788 90105535 -192088129 - LTR1B LTR ERV1 -81 745 1 22 0 0 0 chr1 90106070 90106092 -192087572 + AT_rich Low_complexity Low_complexity 1 22 0 224 296 68 76 chr1 90106348 90106480 -192087184 - L2 LINE L2 -1 3271 3141 5007 157 19 19 chr1 90107018 90108373 -192085291 + L1PA15 LINE L1 4463 5830 -335 2126 109 48 0 chr1 90108373 90108666 -192084998 + AluSc SINE Alu 1 307 -2 5007 157 19 19 chr1 90108666 90109003 -192084661 + L1PA15 LINE L1 5829 6165 0 311 329 81 34 chr1 90109778 90109927 -192083737 - MIR SINE MIR -38 224 69 210 325 91 0 chr1 90110008 90110085 -192083579 + MIR SINE MIR 47 130 -132 22 56 0 0 chr1 90110720 90110756 -192082908 + AT_rich Low_complexity Low_complexity 1 36 0 825 146 257 91 chr1 90111077 90111427 -192082237 + LTR37A LTR ERV1 19 426 0 436 323 32 7 chr1 90112571 90112726 -192080938 + MIR SINE MIR 26 184 -78 1554 191 0 33 chr1 90113000 90113303 -192080361 + AluJo SINE Alu 11 303 -9 22 113 0 0 chr1 90114151 90114257 -192079407 + AT_rich Low_complexity Low_complexity 1 106 0 882 196 18 0 chr1 90114257 90114425 -192079239 - AluJo/FRAM SINE Alu -6 306 136 530 172 0 0 chr1 90114425 90114512 -192079152 - AluJ/FLAM SINE Alu -225 87 1 2316 103 7 22 chr1 90115063 90115473 -192078191 - LTR7 LTR ERV1 -2 448 1 2349 96 53 13 chr1 90115473 90115848 -192077816 - HERVH LTR ERV1 0 7713 7324 1398 125 19 0 chr1 90115848 90116064 -192077600 - HERVH LTR ERV1 -1894 5819 5600 4264 134 18 1 chr1 90116065 90116716 -192076948 - HERVH LTR ERV1 -2564 5149 4488 3438 92 6 6 chr1 90116718 90117220 -192076444 - HERVH LTR ERV1 -3720 3993 3492 813 140 42 0 chr1 90117212 90117355 -192076309 - HERVH LTR ERV1 -4425 3288 3140 * 15509 103 11 15 chr1 90117349 90119945 -192073719 - HERVH LTR ERV1 -4726 2987 216 539 347 68 31 chr1 90120045 90120371 -192073293 + L2 LINE L2 2967 3304 -9 281 317 73 0 chr1 90120472 90120554 -192073110 + MIR SINE MIR 30 117 -145 417 86 0 86 chr1 90120594 90120769 -192072895 + (TA)n Simple_repeat Simple_repeat 2 161 0 462 90 0 85 chr1 90120782 90120959 -192072705 + (TA)n Simple_repeat Simple_repeat 2 163 0 423 114 8 69 chr1 90120974 90121227 -192072437 + (CATATA)n Simple_repeat Simple_repeat 1 237 0 414 118 0 80 chr1 90121242 90121429 -192072235 + (TA)n Simple_repeat Simple_repeat 2 173 0 625 119 2 65 chr1 90121444 90121906 -192071758 + (TA)n Simple_repeat Simple_repeat 1 432 0 304 246 42 42 chr1 90121911 90122029 -192071635 - L1MC4 LINE L1 -1339 6703 6586 1536 183 7 40 chr1 90122143 90122443 -192071221 + AluJo SINE Alu 1 290 -22 23 0 0 0 chr1 90122445 90122468 -192071196 + AT_rich Low_complexity Low_complexity 1 23 0 198 303 174 0 chr1 90122520 90122652 -192071012 + MIR SINE MIR 56 210 -52 3547 249 39 13 chr1 90124384 90125248 -192068416 + MER45B DNA AcHobo 2 888 -152 23 54 0 0 chr1 90125396 90125433 -192068231 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr1 90125506 90125551 -192068113 + AT_rich Low_complexity Low_complexity 1 45 0 252 163 0 0 chr1 90125593 90125642 -192068022 + L1MC4 LINE L1 6655 6703 -1339 781 298 5 0 chr1 90125766 90125954 -192067710 - L1MC4 LINE L1 -2148 5660 5472 225 328 72 52 chr1 90126252 90126326 -192067338 + L1MC/D LINE L1 5585 5656 -2152 2531 51 0 3 chr1 90126326 90126638 -192067026 - AluY SINE Alu 0 311 1 225 328 72 52 chr1 90126638 90126813 -192066851 + L1MC/D LINE L1 5656 5839 -1969 259 255 0 31 chr1 90127178 90127276 -192066388 + L1MC5 LINE L1 7835 7929 -32 303 28 0 0 chr1 90127525 90127561 -192066103 + (TG)n Simple_repeat Simple_repeat 2 37 0 763 221 0 7 chr1 90127990 90128144 -192065520 + FRAM SINE Alu 1 153 -23 230 157 39 39 chr1 90128783 90128834 -192064830 - L2 LINE L2 0 3313 3263 25 0 0 0 chr1 90129130 90129155 -192064509 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr1 90129210 90129253 -192064411 + AT_rich Low_complexity Low_complexity 1 43 0 12043 198 44 34 chr1 90129258 90131637 -192062027 - L1MA7 LINE L1 -12 6483 4130 2085 71 52 0 chr1 90131637 90131934 -192061730 - AluY SINE Alu 0 311 1 12043 198 44 34 chr1 90131934 90131989 -192061675 - L1MA7 LINE L1 -2365 4130 4077 2438 62 7 7 chr1 90131989 90132295 -192061369 - AluY SINE Alu -5 306 1 12043 198 44 34 chr1 90132295 90133734 -192059930 - L1MA7 LINE L1 -2418 4077 2544 2579 122 102 0 chr1 90133734 90134175 -192059489 - LTR19A LTR ERV1 0 486 1 12043 198 44 34 chr1 90134175 90134386 -192059278 - L1MA7 LINE L1 -3951 2544 2337 533 239 53 32 chr1 90134462 90134709 -192058955 - L1MA7 LINE L1 -4013 2337 2086 272 184 0 20 chr1 90134861 90134910 -192058754 + Tigger5 DNA MER2_type 1 48 -2275 227 217 67 0 chr1 90134886 90134946 -192058718 + Tigger5 DNA MER2_type 2251 2314 -9 * 2468 294 40 22 chr1 90135022 90135101 -192058563 - L1MA7 LINE L1 -5078 1203 1127 257 0 30 0 chr1 90135101 90135134 -192058530 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2468 294 40 22 chr1 90135134 90136338 -192057326 - L1MA7 LINE L1 -5154 1127 14 23 0 0 0 chr1 90136421 90136444 -192057220 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 90139451 90139480 -192054184 + AT_rich Low_complexity Low_complexity 1 29 0 400 344 71 9 chr1 90140252 90140464 -192053200 - MIR SINE MIR -1 261 37 186 143 0 0 chr1 90140711 90140746 -192052918 + (TG)n Simple_repeat Simple_repeat 2 36 0 1118 198 5 9 chr1 90142412 90142629 -192051035 - MER20 DNA MER1_type 0 219 4 4352 72 106 124 chr1 90142955 90143796 -192049868 + LTR12 LTR ERV1 1 826 0 25 51 0 0 chr1 90143980 90144019 -192049645 + AT_rich Low_complexity Low_complexity 1 39 0 2215 111 0 0 chr1 90144632 90144929 -192048735 - AluSx SINE Alu -6 306 10 230 316 60 30 chr1 90145679 90145812 -192047852 - MIR SINE MIR -111 151 15 27 49 0 0 chr1 90146082 90146123 -192047541 + AT_rich Low_complexity Low_complexity 1 41 0 1438 178 4 22 chr1 90146168 90146438 -192047226 - AluJb SINE Alu -19 293 29 203 327 0 18 chr1 90146632 90146687 -192046977 + MIR SINE MIR 14 67 -195 190 277 0 60 chr1 90146722 90146805 -192046859 + MIR SINE MIR 173 250 -12 569 337 11 5 chr1 90146940 90147124 -192046540 + L2 LINE L2 2592 2776 -538 3254 155 58 10 chr1 90147129 90147737 -192045927 + L1MB1 LINE L1 5531 6167 -1 26 30 0 0 chr1 90147737 90147770 -192045894 + AT_rich Low_complexity Low_complexity 1 33 0 418 248 34 128 chr1 90147789 90148116 -192045548 + L2 LINE L2 2894 3189 -124 21 0 0 0 chr1 90148393 90148414 -192045250 + AT_rich Low_complexity Low_complexity 1 21 0 2612 245 35 11 chr1 90149655 90151416 -192042248 + L1MA9 LINE L1 1430 7235 -37 498 269 33 16 chr1 90151398 90151580 -192042084 + L1M1 LINE L1 2896 3080 -4485 * 200 114 0 29 chr1 90152810 90152845 -192040819 + (CATA)n Simple_repeat Simple_repeat 3 36 0 529 302 93 40 chr1 90153227 90153648 -192040016 + MER65A LTR ERV1 3 445 0 2862 85 65 34 chr1 90153660 90154133 -192039531 - LTR21A LTR ERV1 -17 488 1 412 316 7 26 chr1 90154707 90154862 -192038802 - MER54B LTR ERVL -547 246 95 1928 214 26 28 chr1 90154956 90155386 -192038278 - MSTB1 LTR MaLR -1 431 3 328 244 30 107 chr1 90155388 90155556 -192038108 + LTR23-int LTR ERV1 718 872 -3999 246 32 0 0 chr1 90156193 90156224 -192037440 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 514 264 0 14 chr1 90156228 90156376 -192037288 + LTR23-int LTR ERV1 860 1005 -4118 392 280 217 10 chr1 90156376 90156583 -192037081 + MER34C LTR ERV1 181 430 -155 283 266 36 0 chr1 90156597 90156696 -192036968 + LTR23-int LTR ERV1 1096 1180 -3691 221 178 22 0 chr1 90156702 90156747 -192036917 + (TATATG)n Simple_repeat Simple_repeat 1 46 0 316 248 3 33 chr1 90156763 90156892 -192036772 + LTR23-int LTR ERV1 1510 2987 -2959 416 245 101 27 chr1 90157089 90157217 -192036447 + LTR23-int LTR ERV1 1725 1761 -3175 2125 104 3 38 chr1 90157217 90157533 -192036131 - AluSx SINE Alu -7 305 1 416 245 101 27 chr1 90157533 90157721 -192035943 + LTR23-int LTR ERV1 1761 1934 -3002 * 632 279 60 35 chr1 90157716 90158235 -192035429 + LTR23-int LTR ERV1 1557 3153 -1727 1369 225 48 7 chr1 90158236 90158594 -192035070 - MER47B DNA MER2_type 0 418 2 1964 202 145 36 chr1 90158637 90159355 -192034309 + LTR23-int LTR ERV1 2491 3286 -1650 1036 259 77 3 chr1 90160475 90160799 -192032865 + LTR23-int LTR ERV1 4214 4561 -310 263 301 0 0 chr1 90161027 90161100 -192032564 + L1MEd LINE L1 593 665 -5454 410 294 80 46 chr1 90161291 90161641 -192032023 + L1MEd LINE L1 896 1257 -4862 316 344 65 16 chr1 90161645 90161831 -192031833 + HAL1 LINE L1 1373 1567 -940 517 290 12 35 chr1 90161924 90162093 -192031571 + FRAM SINE Alu 1 165 -1 21 0 0 0 chr1 90162183 90162204 -192031460 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 90162485 90162507 -192031157 + (T)n Simple_repeat Simple_repeat 1 22 0 608 144 39 100 chr1 90163055 90163235 -192030429 - Charlie5 DNA MER1_type -27 2585 2417 205 344 0 0 chr1 90163745 90163806 -192029858 + GA-rich Low_complexity Low_complexity 4 64 0 298 325 66 40 chr1 90164006 90164157 -192029507 + L2 LINE L2 3116 3270 -2 284 267 12 23 chr1 90164236 90164322 -192029342 + MIR3 SINE MIR 118 202 -6 30 27 0 0 chr1 90164589 90164626 -192029038 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr1 90164678 90164716 -192028948 + AT_rich Low_complexity Low_complexity 1 38 0 1934 142 94 25 chr1 90166028 90166423 -192027241 + MSTA LTR MaLR 5 426 -2 889 251 64 12 chr1 90166429 90166680 -192026984 - MLT1C LTR MaLR 0 467 204 312 158 20 178 chr1 90166764 90166839 -192026825 - MLT1C LTR MaLR -420 85 28 1882 139 100 77 chr1 90166839 90167278 -192026386 - LTR47A LTR ERVL -3 449 1 312 158 20 178 chr1 90167278 90167303 -192026361 - MLT1C LTR MaLR -477 28 1 337 284 20 10 chr1 90168201 90168303 -192025361 + CT-rich Low_complexity Low_complexity 4 106 0 22 0 0 0 chr1 90169781 90169803 -192023861 + AT_rich Low_complexity Low_complexity 1 22 0 2276 94 7 3 chr1 90170455 90170752 -192022912 + AluSg SINE Alu 1 298 -12 292 326 61 38 chr1 90170799 90171066 -192022598 + LTR33 LTR ERVL 64 365 -156 409 327 122 30 chr1 90171076 90171379 -192022285 - LTR16A LTR ERVL 0 450 120 324 244 22 0 chr1 90171493 90171583 -192022081 + LTR33 LTR ERVL 406 497 -24 2135 134 7 0 chr1 90171633 90171932 -192021732 - AluSx SINE Alu -11 301 1 5585 93 59 4 chr1 90172008 90172791 -192020873 + LTR12 LTR ERV1 1 826 0 1070 68 0 0 chr1 90172791 90172924 -192020740 + LTR12 LTR ERV1 582 714 0 285 305 106 14 chr1 90172924 90173065 -192020599 + MIR SINE MIR 95 248 -14 1821 98 73 38 chr1 90173127 90173414 -192020250 - AluY SINE Alu -14 297 1 2246 100 0 25 chr1 90173428 90173747 -192019917 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 90175337 90175359 -192018305 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr1 90175375 90175410 -192018254 + (CA)n Simple_repeat Simple_repeat 2 36 0 701 248 35 49 chr1 90176507 90176733 -192016931 + MER58A DNA MER1_type 1 223 -1 222 128 0 0 chr1 90177175 90177214 -192016450 + (TA)n Simple_repeat Simple_repeat 1 39 0 2264 66 4 0 chr1 90178539 90178812 -192014852 + AluY SINE Alu 7 280 -31 3625 253 56 1 chr1 90179088 90179984 -192013680 + MER45B DNA AcHobo 2 946 -94 267 203 0 0 chr1 90180777 90180836 -192012828 + (TA)n Simple_repeat Simple_repeat 1 59 0 261 0 0 0 chr1 90180866 90180895 -192012769 + (CA)n Simple_repeat Simple_repeat 2 30 0 778 222 70 93 chr1 90181038 90181394 -192012270 - LTR37B LTR ERV1 0 468 121 571 239 54 86 chr1 90181399 90181509 -192012155 - MER58C DNA MER1_type -2205 215 114 1032 154 21 21 chr1 90181509 90181697 -192011967 - L1MB1 LINE L1 -1 6167 5980 571 239 54 86 chr1 90181697 90181808 -192011856 - MER58C DNA MER1_type -2306 114 1 402 260 19 0 chr1 90181816 90181920 -192011744 - LTR37B LTR ERV1 -362 106 1 254 241 70 96 chr1 90182601 90182788 -192010876 - LOR1-int LTR ERV1 -2653 5467 5286 26 30 0 0 chr1 90183422 90183455 -192010209 + AT_rich Low_complexity Low_complexity 1 33 0 949 222 95 83 chr1 90184237 90184660 -192009004 - MLT1C LTR MaLR -6 461 34 1704 125 94 0 chr1 90184688 90184944 -192008720 - AluSg SINE Alu -30 280 1 21 0 0 0 chr1 90184944 90184965 -192008699 + AT_rich Low_complexity Low_complexity 1 21 0 197 62 0 31 chr1 90185984 90186016 -192007648 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr1 90186079 90186102 -192007562 + AT_rich Low_complexity Low_complexity 1 23 0 215 213 0 0 chr1 90186573 90186620 -192007044 + GA-rich Low_complexity Low_complexity 2 48 0 1360 197 49 59 chr1 90186800 90187273 -192006391 - LTR37B LTR ERV1 0 468 1 5896 108 2 8 chr1 90187866 90188747 -192004917 + HERVH LTR ERV1 2112 2987 -4726 768 166 41 0 chr1 90188741 90188886 -192004778 + HERVH LTR ERV1 3140 3290 -4423 * 3432 99 4 6 chr1 90188876 90189379 -192004285 + HERVH LTR ERV1 3492 3993 -3720 4344 143 1 1 chr1 90189381 90190043 -192003621 + HERVH LTR ERV1 4488 5149 -2564 1321 122 23 14 chr1 90190040 90190261 -192003403 + HERVH LTR ERV1 5597 5819 -1894 * 2455 88 48 13 chr1 90190261 90190638 -192003026 + HERVH LTR ERV1 7324 7713 0 2606 92 109 0 chr1 90190638 90191042 -192002622 + LTR7 LTR ERV1 1 448 -2 1360 197 49 59 chr1 90191850 90192323 -192001341 + LTR37B LTR ERV1 1 468 0 215 213 0 0 chr1 90192503 90192550 -192001114 + CT-rich Low_complexity Low_complexity 2 48 0 23 0 0 0 chr1 90193021 90193044 -192000620 + AT_rich Low_complexity Low_complexity 1 23 0 197 62 0 31 chr1 90193107 90193139 -192000525 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr1 90194158 90194179 -191999485 + AT_rich Low_complexity Low_complexity 1 21 0 1494 107 54 0 chr1 90194179 90194384 -191999280 + AluSg SINE Alu 1 216 -94 741 239 70 23 chr1 90194397 90194656 -191999008 + LTR37B LTR ERV1 198 468 0 261 0 0 0 chr1 90194799 90194828 -191998836 + (TG)n Simple_repeat Simple_repeat 2 30 0 267 203 0 0 chr1 90194858 90194917 -191998747 + (TA)n Simple_repeat Simple_repeat 1 59 0 3625 253 56 1 chr1 90195710 90196606 -191997058 - MER45B DNA AcHobo -94 946 2 2264 66 4 0 chr1 90196880 90197153 -191996511 - AluY SINE Alu -31 280 7 222 128 0 0 chr1 90198478 90198517 -191995147 + (TA)n Simple_repeat Simple_repeat 2 40 0 13919 96 12 25 chr1 90198718 90200844 -191992820 - HERVH LTR ERV1 -5469 2244 148 225 125 54 0 chr1 90201007 90201063 -191992601 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 3552 171 15 39 chr1 90201485 90202206 -191991458 - MER44D DNA MER2_type -1 704 1 25 31 0 0 chr1 90202206 90202238 -191991426 + AT_rich Low_complexity Low_complexity 1 32 0 353 365 70 13 chr1 90207084 90207314 -191986350 + MIR SINE MIR 2 244 -18 193 323 113 0 chr1 90207336 90207398 -191986266 - L2 LINE L2 -8 3264 3196 25 51 0 0 chr1 90207520 90207559 -191986105 + AT_rich Low_complexity Low_complexity 1 39 0 490 172 32 0 chr1 90207566 90207659 -191986005 - L1MB3 LINE L1 -272 5911 5816 4776 171 23 44 chr1 90207660 90208741 -191984923 - L1MA9 LINE L1 -1 6311 5254 2294 174 9 41 chr1 90208746 90208977 -191984687 - MSTC LTR MaLR 0 428 216 1711 174 3 25 chr1 90208977 90209293 -191984371 - AluJb SINE Alu -3 309 1 2294 174 9 41 chr1 90209293 90209503 -191984161 - MSTC LTR MaLR -212 216 1 4906 269 90 42 chr1 90209503 90211158 -191982506 - MSTC-int LTR MaLR 0 1735 2 738 229 6 44 chr1 90211160 90211275 -191982389 - MSTC LTR MaLR 0 428 321 4915 84 6 5 chr1 90211275 90211932 -191981732 + PABL_A LTR ERV1 3 660 0 738 229 6 44 chr1 90211932 90211999 -191981665 - MSTC LTR MaLR -107 321 253 697 185 5 2 chr1 90212001 90212189 -191981475 - LTR26B LTR ERV1 0 531 303 * 1090 156 118 9 chr1 90212186 90212398 -191981266 - MSTC LTR MaLR -193 235 1 2041 232 37 34 chr1 90212401 90213043 -191980621 - L1MA9 LINE L1 -897 5249 4606 1509 82 5 0 chr1 90213047 90213241 -191980423 - AluY SINE Alu -16 295 101 2582 98 58 21 chr1 90213241 90213670 -191979994 - LTR7 LTR ERV1 -5 445 1 2561 83 45 0 chr1 90213671 90214045 -191979619 - HERVH LTR ERV1 -1 7712 7322 1399 113 18 14 chr1 90214043 90214265 -191979399 - HERVH LTR ERV1 -1894 5819 5597 * 4035 152 0 34 chr1 90214262 90214947 -191978717 - HERVH LTR ERV1 -2564 5149 4488 3438 98 6 6 chr1 90214949 90215451 -191978213 - HERVH LTR ERV1 -3720 3993 3492 819 162 20 0 chr1 90215441 90215589 -191978075 - HERVH LTR ERV1 -4423 3290 3140 * 19607 92 28 12 chr1 90215583 90218523 -191975141 - HERVH LTR ERV1 -4726 2987 1 2555 99 106 0 chr1 90218525 90218930 -191974734 - LTR7 LTR ERV1 -2 448 1 232 60 90 30 chr1 90218948 90219015 -191974649 + (TA)n Simple_repeat Simple_repeat 2 72 0 306 302 95 0 chr1 90219104 90219212 -191974452 - MIR SINE MIR -63 145 49 766 259 23 117 chr1 90219755 90220148 -191973516 - L2 LINE L2 0 3313 2958 287 221 116 42 chr1 90220177 90220272 -191973392 + L2 LINE L2 3175 3276 -37 21 0 0 0 chr1 90220638 90220659 -191973005 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr1 90222462 90222500 -191971164 + AT_rich Low_complexity Low_complexity 1 38 0 385 261 8 62 chr1 90222851 90222939 -191970725 - L2 LINE L2 0 3313 3233 2847 7 0 0 chr1 90222939 90223247 -191970417 - AluYa5 SINE Alu -3 308 1 385 261 8 62 chr1 90223247 90223288 -191970376 - L2 LINE L2 -80 3233 3191 605 25 0 12 chr1 90224164 90224244 -191969420 + (TTTC)n Simple_repeat Simple_repeat 3 81 0 2221 114 3 0 chr1 90228555 90228852 -191964812 + AluSp SINE Alu 1 298 -15 428 271 203 11 chr1 90230497 90230674 -191962990 + MIR SINE MIR 8 218 -44 24 32 0 0 chr1 90231511 90231542 -191962122 + AT_rich Low_complexity Low_complexity 1 31 0 189 350 0 40 chr1 90232169 90232269 -191961395 + MIR SINE MIR 121 216 -46 2760 123 12 5 chr1 90234082 90234482 -191959182 - LTR32 LTR ERVL 0 471 69 313 245 31 10 chr1 90234482 90234580 -191959084 + (TA)n Simple_repeat Simple_repeat 2 101 0 711 185 79 37 chr1 90235314 90235503 -191958161 + MER3 DNA MER1_type 1 197 -12 685 347 128 31 chr1 90235505 90236061 -191957603 + L2 LINE L2 802 1411 -1903 540 303 74 65 chr1 90236203 90236540 -191957124 + L2 LINE L2 2967 3306 -7 377 370 92 28 chr1 90237017 90237520 -191956144 + L2 LINE L2 2368 2902 -412 26 0 0 0 chr1 90239633 90239659 -191954005 + AT_rich Low_complexity Low_complexity 1 26 0 2423 78 0 3 chr1 90240004 90240312 -191953352 + AluSp SINE Alu 1 307 -6 328 204 80 67 chr1 90240533 90241079 -191952585 - L1MD2 LINE L1 -1 7982 6158 403 232 32 0 chr1 90241081 90241176 -191952488 - MLT1F1 LTR MaLR -428 139 42 387 372 38 23 chr1 90242716 90243060 -191950604 + L2 LINE L2 2624 2972 -342 280 397 81 0 chr1 90243171 90243307 -191950357 + L2 LINE L2 3123 3269 -3 2281 73 21 0 chr1 90243406 90243693 -191949971 - AluSx SINE Alu -19 293 1 396 321 128 0 chr1 90244461 90244679 -191948985 - MIR SINE MIR 0 262 17 24 0 0 0 chr1 90244789 90244813 -191948851 + AT_rich Low_complexity Low_complexity 1 24 0 25 90 0 0 chr1 90245869 90245936 -191947728 + AT_rich Low_complexity Low_complexity 1 67 0 326 223 88 67 chr1 90246211 90246323 -191947341 + L1MEd LINE L1 648 756 -5363 2238 117 0 0 chr1 90246323 90246631 -191947033 + AluSc SINE Alu 1 308 -1 326 223 88 67 chr1 90246631 90246756 -191946908 + L1MEd LINE L1 756 890 -5229 577 296 57 50 chr1 90246844 90246991 -191946673 + L1MEd LINE L1 882 1027 -5092 2552 51 0 3 chr1 90246991 90247303 -191946361 + AluY SINE Alu 1 311 0 577 296 57 50 chr1 90247303 90247472 -191946192 + L1MEd LINE L1 1027 1200 -4919 14122 181 36 15 chr1 90248597 90252553 -191941111 - L1PB1 LINE L1 -1 6866 2565 2531 47 0 3 chr1 90252553 90252852 -191940812 - AluY SINE Alu -13 298 1 14122 181 36 15 chr1 90252852 90254701 -191938963 - L1PB1 LINE L1 -4302 2565 757 1791 126 96 0 chr1 90254727 90254997 -191938667 + AluSx SINE Alu 5 300 -12 860 125 59 15 chr1 90254997 90255133 -191938531 + AluSg/x SINE Alu 132 273 -37 564 225 9 0 chr1 90255155 90255266 -191938398 - L1PB1 LINE L1 -6118 745 634 251 200 18 0 chr1 90255266 90255321 -191938343 - L1PB1 LINE L1 -6663 200 145 593 238 114 59 chr1 90255394 90255667 -191937997 + LTR50 LTR ERVL 3 290 -505 270 81 0 0 chr1 90255713 90255750 -191937914 + (A)n Simple_repeat Simple_repeat 1 37 0 324 282 153 0 chr1 90255753 90255923 -191937741 + L1ME3A LINE L1 5743 5938 -232 27 49 0 0 chr1 90256122 90256163 -191937501 + AT_rich Low_complexity Low_complexity 1 41 0 258 176 0 0 chr1 90256337 90256388 -191937276 + GA-rich Low_complexity Low_complexity 2 52 0 1204 197 102 25 chr1 90256705 90256979 -191936685 - AluJb SINE Alu -15 297 3 68 93 0 0 chr1 90257034 90257228 -191936436 + AT_rich Low_complexity Low_complexity 1 194 0 212 0 0 35 chr1 90257296 90257325 -191936339 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 2872 228 32 6 chr1 90257557 90258185 -191935479 - MER82 DNA MER2_type -9 644 1 305 245 0 82 chr1 90258296 90258394 -191935270 - L1MC4 LINE L1 -1339 6703 6614 264 169 24 12 chr1 90258423 90258506 -191935158 + (TA)n Simple_repeat Simple_repeat 1 84 0 3905 68 6 2 chr1 90258621 90259137 -191934527 - HERVH LTR ERV1 -7195 518 1 2431 109 63 21 chr1 90259139 90259569 -191934095 - LTR7 LTR ERV1 -2 448 1 916 72 0 0 chr1 90259569 90259680 -191933984 - AluY SINE Alu -200 111 1 7007 205 35 24 chr1 90259680 90259847 -191933817 - L1 LINE L1 -1534 5633 5469 6038 127 27 11 chr1 90259847 90260800 -191932864 + LTR5 LTR ERVK 1 969 0 7007 205 35 24 chr1 90260800 90261256 -191932408 - L1 LINE L1 -1698 5469 5020 1670 189 7 0 chr1 90261256 90261585 -191932079 - AluSx SINE Alu 0 331 1 7007 205 35 24 chr1 90261585 90262855 -191930809 - L1 LINE L1 -2147 5020 3717 561 312 53 25 chr1 90262856 90263141 -191930523 - L1 LINE L1 -5289 1879 1587 306 286 100 29 chr1 90263663 90263803 -191929861 - L1 LINE L1 -5991 1107 958 265 356 49 98 chr1 90264011 90264359 -191929305 + L2 LINE L2 2939 3269 -3 231 36 0 0 chr1 90264826 90264854 -191928810 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 90264936 90264957 -191928707 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 90265476 90265498 -191928166 + AT_rich Low_complexity Low_complexity 1 22 0 230 208 0 19 chr1 90265557 90265610 -191928054 - L1ME LINE L1 -379 5791 5740 293 330 87 0 chr1 90265640 90265743 -191927921 + L2 LINE L2 2796 2907 -407 409 149 15 0 chr1 90265751 90265818 -191927846 + MLT1H1 LTR MaLR 488 555 0 480 256 105 39 chr1 90265909 90266241 -191927423 - L1ME LINE L1 -1803 4343 3990 315 293 0 12 chr1 90266812 90266894 -191926770 + Tigger5 DNA MER2_type 1 81 -2242 * 1307 191 0 0 chr1 90266886 90267116 -191926548 + Tigger5 DNA MER2_type 2094 2323 0 577 345 154 31 chr1 90267201 90267680 -191925984 - L3 LINE CR1 -103 1474 937 310 238 50 25 chr1 90267696 90267776 -191925888 + L2 LINE L2 1876 1957 -1357 1793 233 42 7 chr1 90267777 90268228 -191925436 + MLT1C LTR MaLR 1 467 0 2136 237 49 7 chr1 90268233 90268817 -191924847 + MLT1C-int LTR MaLR 5 709 -662 294 217 0 0 chr1 90268809 90268869 -191924795 + MLT1C-int LTR MaLR 825 884 -487 * 576 202 9 0 chr1 90269002 90269111 -191924553 + MLT1C LTR MaLR 351 460 -7 1731 146 33 0 chr1 90269325 90269637 -191924027 - AluSx SINE Alu 0 321 1 531 311 65 58 chr1 90269640 90269949 -191923715 - MLT1J2 LTR MaLR -123 327 17 1956 156 3 13 chr1 90270410 90270724 -191922940 - AluSx SINE Alu -1 311 1 2377 161 17 21 chr1 90270942 90271421 -191922243 + L1MC1 LINE L1 5843 6319 -14 211 141 16 47 chr1 90271796 90271860 -191921804 + T-rich Low_complexity Low_complexity 2 63 0 28 0 0 0 chr1 90272087 90272115 -191921549 + AT_rich Low_complexity Low_complexity 1 28 0 315 269 46 28 chr1 90272440 90272548 -191921116 - MLT2E LTR ERVL -484 144 35 412 330 75 38 chr1 90272656 90272895 -191920769 + L2 LINE L2 2812 3059 -213 200 291 291 0 chr1 90273120 90273223 -191920441 - L3 LINE CR1 -1098 479 347 21 36 0 0 chr1 90275029 90275057 -191918607 + AT_rich Low_complexity Low_complexity 1 28 0 2078 130 22 43 chr1 90275660 90276029 -191917635 - THE1C LTR MaLR 0 375 15 9963 126 12 30 chr1 90276042 90277650 -191916014 - THE1C-int LTR MaLR 0 1580 1 1855 150 29 47 chr1 90277652 90278032 -191915632 - THE1C LTR MaLR -2 373 1 4939 264 71 23 chr1 90278055 90280252 -191913412 + L1MD1 LINE L1 2326 4628 -1518 298 246 48 6 chr1 90280252 90280419 -191913245 + (TA)n Simple_repeat Simple_repeat 2 175 0 189 147 0 0 chr1 90280425 90280459 -191913205 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 1399 180 44 18 chr1 90280511 90280783 -191912881 + AluJo SINE Alu 5 283 -29 3349 219 42 24 chr1 90280797 90282156 -191911508 + L1MD1 LINE L1 4674 6050 -192 444 291 107 37 chr1 90282179 90282855 -191910809 + L1ME3A LINE L1 794 1562 -4699 199 238 0 0 chr1 90283339 90283381 -191910283 + MIR SINE MIR 211 252 -10 297 0 0 0 chr1 90284640 90284673 -191908991 + (CA)n Simple_repeat Simple_repeat 2 34 0 224 287 172 16 chr1 90284754 90284876 -191908788 + L2 LINE L2 2715 2855 -459 306 287 87 9 chr1 90284916 90285031 -191908633 - MIR SINE MIR -3 259 136 393 249 138 15 chr1 90285062 90285197 -191908467 - MIR SINE MIR -46 162 18 207 380 36 51 chr1 90287044 90287318 -191906346 + L2 LINE L2 2848 3117 -155 30 69 0 0 chr1 90287467 90287525 -191906139 + AT_rich Low_complexity Low_complexity 1 58 0 32 43 0 0 chr1 90289070 90289116 -191904548 + AT_rich Low_complexity Low_complexity 1 46 0 1582 206 39 34 chr1 90289752 90290140 -191903524 - MLT1B LTR MaLR 0 390 1 21 0 0 0 chr1 90291089 90291110 -191902554 + AT_rich Low_complexity Low_complexity 1 21 0 369 294 76 33 chr1 90291387 90291571 -191902093 - MLT1K LTR MaLR -19 569 378 2746 102 3 0 chr1 90292934 90293297 -191900367 - THE1B LTR MaLR 0 364 1 327 49 0 0 chr1 90293330 90293371 -191900293 + (TG)n Simple_repeat Simple_repeat 2 42 0 1845 111 4 4 chr1 90293627 90293888 -191899776 - AluSc SINE Alu -48 261 1 2367 216 41 4 chr1 90294589 90295102 -191898562 - MER34 LTR ERV1 0 542 11 226 304 311 0 chr1 90295495 90295630 -191898034 - MER5B DNA MER1_type 0 178 2 468 247 98 50 chr1 90296233 90296522 -191897142 + L1ME3A LINE L1 3135 3442 -2638 395 301 43 25 chr1 90296604 90296886 -191896778 + L1ME3A LINE L1 3624 3910 -2170 261 269 200 24 chr1 90296873 90297045 -191896619 + L1ME3A LINE L1 5404 5544 -554 * 735 197 79 22 chr1 90297045 90297223 -191896441 - MER5A DNA MER1_type 0 189 2 261 269 200 24 chr1 90297223 90297421 -191896243 + L1ME3A LINE L1 5544 5841 -257 886 341 174 36 chr1 90298280 90299248 -191894416 - L3 LINE CR1 -264 1313 213 285 308 86 17 chr1 90299594 90299711 -191893953 + MLT1K LTR MaLR 395 519 -69 26 74 0 0 chr1 90300129 90300183 -191893481 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 90300283 90300305 -191893359 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 90301592 90301622 -191892042 + AT_rich Low_complexity Low_complexity 1 30 0 258 240 31 21 chr1 90302090 90302186 -191891478 + (TA)n Simple_repeat Simple_repeat 2 98 0 25 0 0 0 chr1 90302445 90302470 -191891194 + AT_rich Low_complexity Low_complexity 1 25 0 36 23 0 0 chr1 90302923 90302966 -191890698 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 90302989 90303019 -191890645 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr1 90303052 90303085 -191890579 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr1 90303262 90303298 -191890366 + AT_rich Low_complexity Low_complexity 1 36 0 346 111 0 0 chr1 90303605 90303659 -191890005 - L1MB2 LINE L1 -32 6139 6086 13502 146 32 9 chr1 90303659 90305907 -191887757 - Tigger1 DNA MER2_type 0 2418 118 312 276 25 86 chr1 90305988 90306109 -191887555 - L1M3d LINE L1 -5738 153 43 1817 145 57 0 chr1 90306109 90306392 -191887272 - AluSx SINE Alu -13 299 1 312 276 25 86 chr1 90306392 90306433 -191887231 - L1M3d LINE L1 -5848 43 1 263 333 0 10 chr1 90306432 90306528 -191887136 + L1M4 LINE L1 2675 2769 -3377 * 404 286 91 52 chr1 90306583 90306946 -191886718 + L1M4 LINE L1 2821 3197 -2949 331 104 0 0 chr1 90306966 90307014 -191886650 + MADE1 DNA Mariner 33 80 0 210 37 0 0 chr1 90307146 90307173 -191886491 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 263 269 26 18 chr1 90307176 90307298 -191886366 + MIR SINE MIR 21 142 -66 219 114 0 0 chr1 90307324 90307359 -191886305 + (GA)n Simple_repeat Simple_repeat 2 36 0 256 290 152 14 chr1 90307480 90307625 -191886039 + MIR SINE MIR 49 213 -49 2491 53 3 0 chr1 90308642 90308946 -191884718 + AluY SINE Alu 1 305 -6 1015 247 52 11 chr1 90309334 90309605 -191884059 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr1 90309608 90309629 -191884035 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 323 169 0 26 chr1 90310676 90310753 -191882911 + (CATATA)n Simple_repeat Simple_repeat 5 79 0 547 318 79 0 chr1 90310874 90311088 -191882576 - MIR SINE MIR -28 234 4 1102 187 23 9 chr1 90311926 90312145 -191881519 + AluJb SINE Alu 91 312 0 26 0 0 0 chr1 90312316 90312342 -191881322 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 90312516 90312537 -191881127 + AT_rich Low_complexity Low_complexity 1 21 0 353 242 30 85 chr1 90312830 90312995 -191880669 + L2 LINE L2 1620 1775 -1539 475 153 99 7 chr1 90313007 90313157 -191880507 - HsTC2 DNA Tc2 -1 1897 1732 395 257 27 75 chr1 90313166 90313269 -191880395 - HsTC2 DNA Tc2 -1720 178 86 2492 72 0 0 chr1 90313269 90313575 -191880089 - AluY SINE Alu -5 306 1 395 257 27 75 chr1 90313575 90313658 -191880006 - HsTC2 DNA Tc2 -1812 86 1 2037 293 67 56 chr1 90313659 90314675 -191878989 + L2 LINE L2 1791 2828 -485 189 0 0 0 chr1 90314675 90314696 -191878968 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2037 293 67 56 chr1 90314696 90314932 -191878732 + L2 LINE L2 2828 3060 -253 2057 129 7 0 chr1 90314932 90315269 -191878395 - AluSg SINE Alu 0 341 3 564 334 138 26 chr1 90315472 90315930 -191877734 + MLT1H LTR MaLR 41 549 0 316 320 10 19 chr1 90315931 90316034 -191877630 - MIR SINE MIR -151 111 10 279 294 120 0 chr1 90316133 90316225 -191877439 - MER94 DNA DNA 0 134 32 24 85 0 0 chr1 90316838 90316897 -191876767 + AT_rich Low_complexity Low_complexity 1 59 0 2244 131 26 3 chr1 90316900 90317289 -191876375 - L1MA9 LINE L1 0 6312 5915 234 0 0 0 chr1 90317492 90317518 -191876146 + (TA)n Simple_repeat Simple_repeat 1 26 0 216 86 0 0 chr1 90317517 90317552 -191876112 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 1288 269 119 38 chr1 90318516 90319070 -191874594 + L1ME3A LINE L1 5558 6156 -14 235 326 11 0 chr1 90319655 90319750 -191873914 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 26 50 0 0 chr1 90319949 90319989 -191873675 + AT_rich Low_complexity Low_complexity 1 40 0 284 299 8 68 chr1 90320017 90320134 -191873530 + L2 LINE L2 3163 3272 0 22 0 0 0 chr1 90320334 90320356 -191873308 + AT_rich Low_complexity Low_complexity 1 22 0 1574 218 61 11 chr1 90320773 90321150 -191872514 - MSTD LTR MaLR 0 396 1 1621 212 59 0 chr1 90321462 90321783 -191871881 + MER2 DNA MER2_type 6 345 0 1982 130 3 7 chr1 90322147 90322432 -191871232 - AluSc SINE Alu -23 286 3 198 118 0 0 chr1 90322519 90322553 -191871111 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 999 289 162 53 chr1 90322840 90324151 -191869513 + L2 LINE L2 1746 3313 0 272 327 79 0 chr1 90325707 90325808 -191867856 + MIR SINE MIR 63 171 -91 233 169 28 56 chr1 90326801 90326872 -191866792 + L1M3 LINE L1 5862 5930 -241 993 311 95 21 chr1 90326875 90327347 -191866317 - L2 LINE L2 -622 2692 2186 478 121 10 20 chr1 90327348 90327447 -191866217 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 351 305 142 41 chr1 90327484 90327828 -191865836 - L2 LINE L2 -1156 2158 1780 374 301 77 70 chr1 90328244 90328503 -191865161 + LTR33A LTR ERVL 2 262 -261 499 202 18 0 chr1 90328584 90328693 -191864971 + LTR33A LTR ERVL 411 521 -2 249 184 51 10 chr1 90328696 90328794 -191864870 + (TA)n Simple_repeat Simple_repeat 2 103 0 302 286 22 11 chr1 90328796 90328887 -191864777 - L2 LINE L2 -700 2614 2523 214 169 31 15 chr1 90328894 90328959 -191864705 + (TA)n Simple_repeat Simple_repeat 2 67 0 2220 114 13 0 chr1 90329337 90329643 -191864021 - AluSx SINE Alu -2 310 1 263 328 26 35 chr1 90330165 90330281 -191863383 + L3 LINE CR1 1388 1502 -75 453 268 63 73 chr1 90330332 90330566 -191863098 + MIR SINE MIR 19 252 -10 237 370 26 32 chr1 90331069 90331223 -191862441 - MIR SINE MIR -89 173 21 3228 191 19 20 chr1 90331567 90332181 -191861483 - L1MC3 LINE L1 0 7785 7171 2041 123 125 8 chr1 90332181 90332564 -191861100 - MSTA LTR MaLR 0 428 1 3228 191 19 20 chr1 90332564 90332598 -191861066 - L1MC3 LINE L1 -614 7171 7138 313 354 40 0 chr1 90334072 90334171 -191859493 + L2 LINE L2 3169 3271 -1 190 292 240 31 chr1 90335740 90335836 -191857828 - MIR SINE MIR -40 222 107 440 335 109 39 chr1 90336204 90336670 -191856994 - MLT1K LTR MaLR -2 586 88 1632 181 13 19 chr1 90337345 90337654 -191856010 + AluJb SINE Alu 1 307 -5 229 242 55 11 chr1 90337924 90338015 -191855649 - L1ME3A LINE L1 -233 5937 5843 31 0 0 0 chr1 90338053 90338084 -191855580 + AT_rich Low_complexity Low_complexity 1 31 0 2223 107 10 0 chr1 90338130 90338428 -191855236 - AluSx SINE Alu -9 303 3 2382 63 0 13 chr1 90338627 90338942 -191854722 - AluY SINE Alu 0 311 1 419 293 87 35 chr1 90338957 90339244 -191854420 - LTR33 LTR ERVL -64 457 156 282 116 0 0 chr1 90339340 90339383 -191854281 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 1000 220 71 8 chr1 90340750 90341005 -191852659 - L1ME3A LINE L1 -338 5783 5513 466 328 17 17 chr1 90341597 90341741 -191851923 + MER5A DNA MER1_type 3 146 -43 413 320 157 0 chr1 90341741 90341894 -191851770 - MER5A DNA MER1_type -3 186 10 464 319 11 58 chr1 90342907 90343095 -191850569 - MIR SINE MIR -10 252 74 233 326 87 14 chr1 90343762 90343900 -191849764 - L2 LINE L2 -37 3276 3129 293 306 185 30 chr1 90344221 90344551 -191849113 - MLT1K LTR MaLR -44 544 164 2564 151 66 80 chr1 90344745 90344978 -191848686 - L1MC3 LINE L1 -4 7781 7546 2352 80 3 0 chr1 90344978 90345277 -191848387 - AluY SINE Alu -11 300 1 2564 151 66 80 chr1 90345277 90345631 -191848033 - L1MC3 LINE L1 -239 7546 7202 1271 202 4 16 chr1 90346088 90346346 -191847318 + AluJo SINE Alu 3 257 -55 288 53 0 0 chr1 90346354 90346392 -191847272 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 347 310 62 8 chr1 90346516 90346645 -191847019 - MIR SINE MIR -10 252 117 311 281 46 97 chr1 90346993 90347210 -191846454 + MLT1K LTR MaLR 366 571 -17 455 305 40 0 chr1 90347480 90347631 -191846033 + MIR SINE MIR 2 158 -104 673 223 184 27 chr1 90347631 90348101 -191845563 + LTR28 LTR ERV1 1 610 -10 357 281 33 0 chr1 90348160 90348281 -191845383 + MIR SINE MIR 135 259 -3 515 144 79 36 chr1 90350294 90350433 -191843231 + LTR45B LTR ERV1 343 487 -2 4288 168 40 79 chr1 90350992 90351555 -191842109 - L1MA9 LINE L1 -3 7269 6686 237 257 43 0 chr1 90351555 90351625 -191842039 - LTR66 LTR ERVL -152 458 386 4288 168 40 79 chr1 90351625 90352746 -191840918 - L1MA9 LINE L1 -586 6686 5585 210 143 0 0 chr1 90352747 90352782 -191840882 + (T)n Simple_repeat Simple_repeat 1 35 0 3446 212 32 24 chr1 90352848 90353569 -191840095 - L1MA9 LINE L1 -2097 5009 4279 4154 77 4 7 chr1 90353569 90354125 -191839539 - MER41A LTR ERV1 0 554 1 3446 212 32 24 chr1 90354125 90354242 -191839422 - L1MA9 LINE L1 -2827 4279 4164 1898 265 113 28 chr1 90354246 90355036 -191838628 - L1MA9 LINE L1 -6167 863 7 282 170 21 0 chr1 90355150 90355197 -191838467 - LTR9B LTR ERV1 -2 642 595 * 1657 192 72 29 chr1 90355195 90355581 -191838083 - LTR9B LTR ERV1 -207 437 35 335 108 31 31 chr1 90355581 90355646 -191838018 - LTR9B LTR ERV1 -570 74 10 23 33 0 0 chr1 90356916 90356946 -191836718 + AT_rich Low_complexity Low_complexity 1 30 0 7763 61 0 1 chr1 90359865 90361408 -191832256 - L1PA5 LINE L1 -256 5898 4357 4749 113 1 0 chr1 90361397 90362106 -191831558 + L1P LINE L1 2514 3223 -2923 * 2400 85 0 0 chr1 90362232 90362538 -191831126 - AluSq SINE Alu -6 307 2 238 381 138 4 chr1 90362583 90362843 -191830821 - L3 LINE CR1 -52 1525 1231 929 329 54 3 chr1 90365410 90365760 -191827904 + MLT1J LTR MaLR 23 390 -121 1983 249 122 90 chr1 90365788 90366842 -191826822 - MER52A LTR ERV1 -10 1745 1 4888 179 22 17 chr1 90367077 90368749 -191824915 - L1P4 LINE L1 -366 5800 4125 1535 224 94 41 chr1 90369795 90370282 -191823382 + MLT2B1 LTR ERVL 1 513 -7 21 57 0 0 chr1 90370767 90370802 -191822862 + AT_rich Low_complexity Low_complexity 1 35 0 270 262 131 28 chr1 90371980 90372087 -191821577 - L2 LINE L2 0 3313 3196 1825 228 126 27 chr1 90372149 90372738 -191820926 + L1ME1 LINE L1 5514 6160 -6 197 386 57 34 chr1 90372926 90373102 -191820562 - L2 LINE L2 -358 2956 2777 218 262 98 0 chr1 90373274 90373335 -191820329 + L2 LINE L2 3185 3251 -21 23 33 0 0 chr1 90373556 90373586 -191820078 + AT_rich Low_complexity Low_complexity 1 30 0 385 302 129 12 chr1 90373590 90373838 -191819826 + L1MC4a LINE L1 5374 5650 -2158 26 0 0 0 chr1 90374126 90374152 -191819512 + AT_rich Low_complexity Low_complexity 1 26 0 236 171 0 100 chr1 90374167 90374237 -191819427 + L1MC4a LINE L1 5870 5932 -1876 22 70 0 0 chr1 90374409 90374452 -191819212 + AT_rich Low_complexity Low_complexity 1 43 0 187 345 0 0 chr1 90376702 90376757 -191816907 - MIR SINE MIR -113 149 95 619 318 62 39 chr1 90376773 90377131 -191816533 - MLT1J1 LTR MaLR -6 440 75 821 280 108 58 chr1 90377141 90377706 -191815958 - MLT1G1 LTR MaLR -1 594 2 300 286 0 0 chr1 90377706 90377776 -191815888 - MLT1J1 LTR MaLR -376 70 1 867 303 81 25 chr1 90377989 90378434 -191815230 + ERVL LTR ERVL 4335 4804 -960 328 218 86 2 chr1 90378548 90378643 -191815021 - MLT1J1 LTR MaLR -30 416 326 620 288 33 29 chr1 90378910 90379150 -191814514 + ERVL LTR ERVL 4918 5158 -606 235 194 30 45 chr1 90380746 90380813 -191812851 + LTR33A LTR ERVL 457 522 -1 2220 90 17 0 chr1 90381160 90381449 -191812215 + AluSg SINE Alu 1 294 -16 180 0 0 0 chr1 90381575 90381595 -191812069 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 309 223 53 116 chr1 90381999 90382270 -191811394 - LTR28 LTR ERV1 0 1005 549 * 591 286 163 16 chr1 90382268 90382698 -191810966 - LTR1B LTR ERV1 -301 525 33 329 241 146 19 chr1 90383212 90383370 -191810294 - MER112 DNA MER1_type -12 248 71 24 32 0 0 chr1 90383955 90383986 -191809678 + AT_rich Low_complexity Low_complexity 1 31 0 30 45 0 0 chr1 90384436 90384480 -191809184 + AT_rich Low_complexity Low_complexity 1 44 0 29 28 0 0 chr1 90384715 90384751 -191808913 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr1 90385137 90385168 -191808496 + AT_rich Low_complexity Low_complexity 1 31 0 3028 184 30 7 chr1 90385413 90386011 -191807653 - L1MB2 LINE L1 0 6171 5560 541 293 194 12 chr1 90386178 90386431 -191807233 - L2 LINE L2 0 3313 3015 25 31 0 0 chr1 90386614 90386646 -191807018 + AT_rich Low_complexity Low_complexity 1 32 0 287 225 0 50 chr1 90387808 90387888 -191805776 + MER5A DNA MER1_type 70 145 -44 4864 180 47 25 chr1 90388197 90389313 -191804351 - L1MD2 LINE L1 -1 6358 5219 23 54 0 0 chr1 90389371 90389408 -191804256 + AT_rich Low_complexity Low_complexity 1 37 0 202 299 0 0 chr1 90389415 90389482 -191804182 + A-rich Low_complexity Low_complexity 1 67 0 225 227 76 15 chr1 90390412 90390478 -191803186 + MIR SINE MIR 77 146 -116 205 264 0 0 chr1 90392744 90392797 -191800867 + (CA)n Simple_repeat Simple_repeat 2 54 0 1436 226 64 20 chr1 90393230 90393463 -191800201 + LTR37B LTR ERV1 9 230 -238 2465 146 15 0 chr1 90393463 90393860 -191799804 + MER57A LTR ERV1 1 403 0 1436 226 64 20 chr1 90393860 90394065 -191799599 + LTR37B LTR ERV1 230 466 -2 560 279 88 39 chr1 90394391 90394674 -191798990 - L1MC4a LINE L1 -1981 5827 5531 183 225 50 88 chr1 90394746 90394826 -191798838 - L2 LINE L2 -1098 2216 2140 23 0 0 0 chr1 90394888 90394911 -191798753 + AT_rich Low_complexity Low_complexity 1 23 0 1676 207 25 3 chr1 90394995 90395352 -191798312 - MLT1A1 LTR MaLR 0 365 1 223 229 98 0 chr1 90395488 90395549 -191798115 + L2 LINE L2 2669 2735 -579 1048 83 0 0 chr1 90395730 90395862 -191797802 + AluY SINE Alu 1 132 -179 23 54 0 0 chr1 90396649 90396686 -191796978 + AT_rich Low_complexity Low_complexity 1 37 0 254 337 33 11 chr1 90397421 90397513 -191796151 - LTR33A LTR ERVL -374 149 56 578 301 6 6 chr1 90398411 90398584 -191795080 - MIR SINE MIR -2 260 88 624 193 112 48 chr1 90398931 90399118 -191794546 + MER3 DNA MER1_type 6 204 -5 259 222 19 0 chr1 90403086 90403140 -191790524 + (TG)n Simple_repeat Simple_repeat 2 56 0 190 405 18 9 chr1 90403378 90403489 -191790175 - L2 LINE L2 -6 3266 3155 1723 179 31 8 chr1 90403958 90404315 -191789349 - MLT1A1 LTR MaLR 0 365 1 1407 197 143 16 chr1 90404660 90405101 -191788563 - LTR54B LTR ERV1 -1 497 1 25 0 0 0 chr1 90406158 90406183 -191787481 + AT_rich Low_complexity Low_complexity 1 25 0 247 346 0 15 chr1 90406543 90406639 -191787025 - MIR SINE MIR -112 96 3 224 305 43 67 chr1 90406667 90406831 -191786833 + MIR SINE MIR 53 212 -50 1124 174 93 20 chr1 90407005 90407252 -191786412 + AluJo SINE Alu 36 300 -12 681 201 0 8 chr1 90408229 90408363 -191785301 - FLAM_C SINE Alu 0 133 1 468 257 21 28 chr1 90408364 90408508 -191785156 - MIR SINE MIR -18 244 102 31 58 0 0 chr1 90408779 90408831 -191784833 + AT_rich Low_complexity Low_complexity 1 52 0 1722 138 11 18 chr1 90411326 90411601 -191782063 + AluJo SINE Alu 3 275 -37 207 0 0 0 chr1 90411611 90411634 -191782030 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1470 224 3 13 chr1 90411950 90412263 -191781401 - AluJo SINE Alu -2 310 1 646 291 43 39 chr1 90415292 90415546 -191778118 + MIR SINE MIR 3 257 -5 1165 251 25 70 chr1 90416406 90416893 -191776771 - MLT1C LTR MaLR -2 465 1 22 35 0 0 chr1 90416919 90416948 -191776716 + AT_rich Low_complexity Low_complexity 1 29 0 214 191 0 0 chr1 90417082 90417124 -191776540 + A-rich Low_complexity Low_complexity 1 42 0 2466 71 0 0 chr1 90417301 90417597 -191776067 + AluY SINE Alu 1 296 -15 547 228 12 104 chr1 90417598 90417848 -191775816 + L1MC5 LINE L1 6735 6961 -1000 1912 246 82 25 chr1 90417864 90418442 -191775222 - MER50 LTR ERV1 0 734 109 3895 180 57 31 chr1 90418442 90419244 -191774420 - LTR1B LTR ERV1 -3 823 1 1912 246 82 25 chr1 90419244 90419351 -191774313 - MER50 LTR ERV1 -625 109 10 707 251 126 23 chr1 90419358 90419748 -191773916 + L1MC5 LINE L1 6989 7418 -543 23 0 0 0 chr1 90419846 90419869 -191773795 + AT_rich Low_complexity Low_complexity 1 23 0 532 176 0 0 chr1 90420459 90420544 -191773120 + FRAM/FAM SINE Alu 1 84 -92 37 23 0 0 chr1 90421239 90421283 -191772381 + AT_rich Low_complexity Low_complexity 1 44 0 251 209 0 43 chr1 90421840 90421955 -191771709 + (TATATG)n Simple_repeat Simple_repeat 5 114 0 210 347 42 0 chr1 90422157 90422229 -191771435 - MIR SINE MIR -150 112 38 565 337 161 42 chr1 90422333 90422586 -191771078 - L2 LINE L2 -264 3008 2786 2342 67 0 17 chr1 90422586 90422905 -191770759 - AluY SINE Alu 0 311 1 565 337 161 42 chr1 90422905 90423780 -191769884 - L2 LINE L2 -486 2786 1749 192 306 12 24 chr1 90423965 90424050 -191769614 + L2 LINE L2 3229 3312 -1 2137 120 0 10 chr1 90424156 90424456 -191769208 - AluSg SINE Alu -9 301 5 2093 129 0 13 chr1 90425127 90425436 -191768228 - AluSx SINE Alu -7 305 1 180 152 0 0 chr1 90425513 90425546 -191768118 + (TAA)n Simple_repeat Simple_repeat 2 34 0 277 241 11 0 chr1 90426232 90426319 -191767345 + (TA)n Simple_repeat Simple_repeat 1 88 0 7195 97 0 1 chr1 90427002 90428801 -191764863 - L1PA7 LINE L1 0 6154 4357 11753 98 7 4 chr1 90428801 90430615 -191763049 + L1PA7 LINE L1 2525 4344 -1802 2401 115 120 5 chr1 90432493 90432877 -191760787 + MSTA LTR MaLR 1 428 0 350 219 67 19 chr1 90432912 90433017 -191760647 - MIR SINE MIR -43 219 110 414 0 0 0 chr1 90433502 90433548 -191760116 + (T)n Simple_repeat Simple_repeat 1 46 0 560 281 31 0 chr1 90434650 90434810 -191758854 + MIR SINE MIR 72 236 -26 231 36 0 0 chr1 90434818 90434846 -191758818 + (TTA)n Simple_repeat Simple_repeat 2 29 0 15979 228 25 24 chr1 90434901 90441549 -191752115 + L1PA15 LINE L1 7 6919 -684 2388 82 0 16 chr1 90441549 90441865 -191751799 + AluY SINE Alu 1 311 0 15979 228 25 24 chr1 90441865 90442549 -191751115 + L1PA15 LINE L1 6919 7601 -2 337 321 193 14 chr1 90442613 90442831 -191750833 + MIR SINE MIR 6 262 0 2080 151 28 28 chr1 90443137 90443501 -191750163 - THE1B LTR MaLR 0 364 1 10723 108 28 10 chr1 90443501 90445054 -191748610 - THE1B-int LTR MaLR 0 1580 1 2016 154 30 28 chr1 90445054 90445417 -191748247 - THE1B LTR MaLR 0 364 1 211 310 0 0 chr1 90445513 90445571 -191748093 + CT-rich Low_complexity Low_complexity 1 58 0 334 174 373 12 chr1 90447077 90447238 -191746426 + MER20 DNA MER1_type 1 219 0 514 275 50 50 chr1 90447633 90447833 -191745831 + MIR SINE MIR 2 201 -61 36881 83 12 8 chr1 90448523 90454651 -191739013 - L1PA3 LINE L1 0 6155 1 483 235 52 139 chr1 90456849 90457100 -191736564 - MIR SINE MIR 0 262 34 234 0 0 0 chr1 90457996 90458022 -191735642 + (CAT)n Simple_repeat Simple_repeat 3 28 0 26 0 0 0 chr1 90458378 90458404 -191735260 + AT_rich Low_complexity Low_complexity 1 26 0 2136 218 52 10 chr1 90460457 90460955 -191732709 - MLT2B2 LTR ERVL -7 496 1 321 221 13 60 chr1 90461878 90462027 -191731637 - L1MC5 LINE L1 -48 7913 7772 182 255 20 0 chr1 90463116 90463167 -191730497 + MIR SINE MIR 166 217 -45 285 170 0 0 chr1 90464559 90464606 -191729058 + AluSx SINE Alu 1 47 -252 1951 154 16 48 chr1 90464606 90464982 -191728682 - THE1B LTR MaLR 0 364 1 11209 86 37 5 chr1 90464982 90466513 -191727151 - THE1B-int LTR MaLR 0 1580 1 1981 126 30 54 chr1 90466513 90466886 -191726778 - THE1B LTR MaLR 0 364 1 1923 132 0 0 chr1 90466888 90467154 -191726510 + AluSx SINE Alu 45 310 -2 757 288 32 98 chr1 90467291 90467822 -191725842 - MER34 LTR ERV1 -46 496 1 846 139 37 27 chr1 90468146 90468333 -191725331 + MER53 DNA DNA 1 189 0 559 247 84 106 chr1 90468824 90469266 -191724398 - MLT1H LTR MaLR -4 545 114 25 51 0 0 chr1 90469384 90469423 -191724241 + AT_rich Low_complexity Low_complexity 1 39 0 201 94 0 0 chr1 90469512 90469544 -191724120 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 464 314 52 14 chr1 90469546 90469756 -191723908 - L1ME3 LINE L1 -12 6150 5933 * 586 309 31 7 chr1 90469746 90470040 -191723624 - L1M4 LINE L1 -3399 3245 2945 276 30 0 0 chr1 90470951 90470984 -191722680 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 101 0 0 chr1 90471263 90471342 -191722322 + AT_rich Low_complexity Low_complexity 1 79 0 204 288 82 75 chr1 90471343 90471489 -191722175 + MIR3 SINE MIR 13 159 -49 2297 90 0 3 chr1 90472276 90472586 -191721078 + AluY SINE Alu 1 309 -2 356 248 101 34 chr1 90473258 90473407 -191720257 + MIR SINE MIR 49 207 -55 192 281 16 31 chr1 90473825 90473889 -191719775 + MIR3 SINE MIR 122 184 -24 30 0 0 0 chr1 90474207 90474237 -191719427 + AT_rich Low_complexity Low_complexity 1 30 0 188 256 105 23 chr1 90474342 90474428 -191719236 + MIR3 SINE MIR 93 185 -23 240 306 8 65 chr1 90475665 90475789 -191717875 - L2 LINE L2 0 3313 3197 238 182 30 0 chr1 90475950 90476016 -191717648 + (TA)n Simple_repeat Simple_repeat 2 69 0 23 0 0 0 chr1 90476016 90476039 -191717625 + AT_rich Low_complexity Low_complexity 1 23 0 328 266 11 32 chr1 90476045 90476139 -191717525 + L2 LINE L2 3168 3259 -54 1560 257 22 7 chr1 90476241 90476645 -191717019 - L1M4 LINE L1 -4768 1878 1469 604 227 55 0 chr1 90476648 90476776 -191716888 - L1M4 LINE L1 -5756 786 652 525 314 157 38 chr1 90477034 90477532 -191716132 - L2 LINE L2 -634 2680 2094 2215 94 7 3 chr1 90477532 90477829 -191715835 + AluSc SINE Alu 1 298 -11 525 314 157 38 chr1 90477829 90477942 -191715722 - L2 LINE L2 -1220 2094 1996 525 290 47 0 chr1 90478472 90478641 -191715023 - LTR33A LTR ERVL 0 523 347 474 299 84 33 chr1 90478691 90478905 -191714759 - LTR33A LTR ERVL -293 230 6 285 316 61 18 chr1 90479099 90479213 -191714451 + L2 LINE L2 3195 3313 0 2345 87 3 23 chr1 90479244 90479554 -191714110 + AluSc SINE Alu 1 304 -5 291 316 61 18 chr1 90479815 90479929 -191713735 + L2 LINE L2 3195 3313 0 2315 90 3 23 chr1 90479961 90480271 -191713393 + AluSc SINE Alu 1 304 -5 205 244 0 0 chr1 90481382 90481427 -191712237 + L2 LINE L2 3268 3312 -1 2380 131 16 11 chr1 90483644 90484017 -191709647 + THE1C LTR MaLR 1 375 0 9767 122 45 1 chr1 90484017 90485469 -191708195 + THE1C-int LTR MaLR 1 1515 -65 2541 62 0 0 chr1 90485469 90485774 -191707890 + AluY SINE Alu 1 305 -6 33 80 0 0 chr1 90486003 90486078 -191707586 + AT_rich Low_complexity Low_complexity 1 75 0 366 190 25 0 chr1 90486152 90486231 -191707433 - MER106B DNA MER1_type -907 152 72 204 184 0 0 chr1 90486231 90486280 -191707384 + T-rich Low_complexity Low_complexity 1 49 0 2239 131 8 35 chr1 90486285 90486449 -191707215 + THE1B LTR MaLR 1 168 -196 2284 109 0 3 chr1 90486449 90486751 -191706913 - AluSq SINE Alu -12 301 1 2239 131 8 35 chr1 90486751 90486960 -191706704 + THE1B LTR MaLR 168 364 0 26 82 0 0 chr1 90487174 90487235 -191706429 + AT_rich Low_complexity Low_complexity 1 61 0 297 0 0 0 chr1 90487303 90487336 -191706328 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr1 90487584 90487605 -191706059 + AT_rich Low_complexity Low_complexity 1 21 0 485 268 42 14 chr1 90488283 90488425 -191705239 + LTR40a LTR ERVL 1 146 -373 2823 114 58 0 chr1 90488537 90488924 -191704740 + MLT2A2 LTR ERVL 1 417 -36 255 61 0 0 chr1 90488924 90488957 -191704707 + (TA)n Simple_repeat Simple_repeat 2 34 0 2823 114 58 0 chr1 90488957 90488997 -191704667 + MLT2A2 LTR ERVL 417 453 0 13998 102 17 0 chr1 90488997 90490923 -191702741 + HERVL-A2-A2 LTR ERVL 61 2018 -3636 26725 74 8 8 chr1 90490924 90494353 -191699311 + HERVL-A2-A2 LTR ERVL 2225 5654 0 3232 105 11 2 chr1 90494353 90494802 -191698862 + MLT2A2 LTR ERVL 1 453 0 379 192 10 10 chr1 90494807 90494906 -191698758 + CT-rich Low_complexity Low_complexity 2 100 0 1118 109 0 14 chr1 90494909 90495268 -191698396 + (TTTC)n Simple_repeat Simple_repeat 1 354 0 1671 181 0 0 chr1 90495270 90495546 -191698118 - AluJb SINE Alu -36 276 1 237 370 125 14 chr1 90495639 90495855 -191697809 + L2 LINE L2 2824 3063 -209 1789 107 4 0 chr1 90496126 90496370 -191697294 - AluSg SINE Alu -5 305 61 197 200 0 25 chr1 90496564 90496604 -191697060 + MIR SINE MIR 223 261 -1 200 240 27 93 chr1 90497437 90497512 -191696152 + MIR3 SINE MIR 8 77 -131 198 0 0 0 chr1 90497517 90497539 -191696125 + (A)n Simple_repeat Simple_repeat 1 22 0 1895 177 71 17 chr1 90498658 90498988 -191694676 + Tigger4(Zombi) DNA MER2_type 11 363 -2368 207 0 0 0 chr1 90498988 90499011 -191694653 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1895 177 71 17 chr1 90499011 90499031 -191694633 + Tigger4(Zombi) DNA MER2_type 363 380 -2351 42700 36 21 1 chr1 90499031 90505041 -191688623 - L1PA2 LINE L1 -23 6132 1 12727 138 64 20 chr1 90505070 90507160 -191686504 + Tigger4(Zombi) DNA MER2_type 357 2556 -175 1925 116 18 7 chr1 90507160 90507471 -191686193 + AluSx SINE Alu 3 316 0 12727 138 64 20 chr1 90507471 90507655 -191686009 + Tigger4(Zombi) DNA MER2_type 2556 2731 0 2151 119 0 3 chr1 90507896 90508189 -191685475 + AluSq SINE Alu 1 292 -21 198 0 0 0 chr1 90508189 90508211 -191685453 + (TA)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr1 90508261 90508297 -191685367 + AT_rich Low_complexity Low_complexity 1 36 0 299 353 81 6 chr1 90508731 90508904 -191684760 - MIR SINE MIR -24 238 53 417 357 19 0 chr1 90508993 90509147 -191684517 + MIR SINE MIR 8 164 -98 280 367 58 0 chr1 90509968 90510088 -191683576 + L2 LINE L2 2916 3042 -271 225 358 36 36 chr1 90512932 90513125 -191680539 + L2 LINE L2 2200 2392 -922 269 274 148 0 chr1 90513430 90513565 -191680099 + L2 LINE L2 1345 1499 -1815 7312 94 9 21 chr1 90513582 90514652 -191679012 - MER11C LTR ERVK -14 1057 1 383 347 41 6 chr1 90514654 90514824 -191678840 + L2 LINE L2 1492 1667 -1647 661 356 108 30 chr1 90515559 90516369 -191677295 - L2 LINE L2 -224 3048 2152 662 251 79 30 chr1 90517380 90517647 -191676017 + L1MC4 LINE L1 5363 5642 -2166 384 259 41 6 chr1 90517731 90517901 -191675763 + (TA)n Simple_repeat Simple_repeat 1 176 0 765 251 106 12 chr1 90517920 90518175 -191675489 + L1MC4 LINE L1 5649 5927 -1881 200 182 0 0 chr1 90518214 90518247 -191675417 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 65 0 0 chr1 90518345 90518391 -191675273 + AT_rich Low_complexity Low_complexity 1 46 0 333 313 69 61 chr1 90518798 90518973 -191674691 + L1MC4 LINE L1 6850 7022 -1020 2267 133 11 19 chr1 90518973 90519340 -191674324 - THE1B LTR MaLR 0 364 1 8793 130 62 37 chr1 90519340 90520882 -191672782 - THE1B-int LTR MaLR 0 1580 1 2319 129 11 14 chr1 90520882 90521247 -191672417 - THE1B LTR MaLR 0 364 1 333 313 69 61 chr1 90521247 90521331 -191672333 + L1MC4 LINE L1 7021 7113 -929 2164 225 19 19 chr1 90521336 90521802 -191671862 + MER70A LTR ERVL 7 472 0 264 293 121 50 chr1 90521942 90522280 -191671384 + L1MC4a LINE L1 7034 7395 -413 592 25 37 0 chr1 90522335 90522416 -191671248 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 670 208 0 0 chr1 90522634 90522754 -191670910 - AluJb SINE Alu -14 298 179 259 317 12 0 chr1 90523095 90523177 -191670487 + GA-rich Low_complexity Low_complexity 2 84 0 252 354 113 38 chr1 90523178 90523938 -191669726 - L2 LINE L2 -1445 1869 1053 205 337 55 74 chr1 90524156 90524319 -191669345 + L2 LINE L2 2525 2684 -630 974 205 0 0 chr1 90524348 90524519 -191669145 + FRAM SINE Alu 1 162 -14 6423 107 3 7 chr1 90524574 90526403 -191667261 - L1PA8 LINE L1 -7 6165 4404 198 353 78 46 chr1 90526502 90526720 -191666944 + L2 LINE L2 2821 3045 -227 26 0 0 0 chr1 90527187 90527213 -191666451 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 90528522 90528546 -191665118 + AT_rich Low_complexity Low_complexity 1 24 0 1923 143 3 16 chr1 90528894 90529208 -191664456 - AluSx SINE Alu 0 312 3 739 329 45 27 chr1 90529340 90529714 -191663950 - L2 LINE L2 -76 3237 2857 25 0 0 0 chr1 90530688 90530713 -191662951 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 90531833 90531863 -191661801 + AT_rich Low_complexity Low_complexity 1 30 0 27 92 0 0 chr1 90532724 90532800 -191660864 + AT_rich Low_complexity Low_complexity 1 76 0 185 197 15 0 chr1 90533041 90533107 -191660557 + (TA)n Simple_repeat Simple_repeat 1 67 0 286 284 0 43 chr1 90533163 90533279 -191660385 - HAL1b LINE L1 -53 1295 1185 25 51 0 0 chr1 90533304 90533343 -191660321 + AT_rich Low_complexity Low_complexity 1 39 0 366 252 17 17 chr1 90533447 90533566 -191660098 - HAL1b LINE L1 -375 973 855 22 56 0 0 chr1 90533774 90533810 -191659854 + AT_rich Low_complexity Low_complexity 1 36 0 2080 174 68 38 chr1 90533840 90534311 -191659353 - L1MA9 LINE L1 -149 6163 5679 254 200 0 125 chr1 90535130 90535151 -191658513 + MER91 DNA MER1_type 121 143 -47 1949 125 10 0 chr1 90535151 90535446 -191658218 - AluSx SINE Alu -14 298 1 254 200 0 125 chr1 90535446 90535504 -191658160 + MER91 DNA MER1_type 143 190 0 268 301 114 8 chr1 90535517 90535640 -191658024 - MIR SINE MIR -43 219 84 1595 212 47 42 chr1 90535678 90536107 -191657557 + MER63B DNA MER1_type 6 436 0 319 339 62 0 chr1 90536151 90536281 -191657383 + MIR3 SINE MIR 17 154 -54 1552 139 14 56 chr1 90536390 90536677 -191656987 + AluSx SINE Alu 30 304 -8 518 300 37 11 chr1 90536927 90537117 -191656547 + L2 LINE L2 2334 2528 -786 803 318 82 37 chr1 90537164 90537873 -191655791 - L2 LINE L2 -37 3276 2534 379 328 60 71 chr1 90537876 90538242 -191655422 + L2 LINE L2 2804 3165 -148 488 252 0 0 chr1 90539343 90539470 -191654194 + MER3 DNA MER1_type 78 204 -5 240 236 0 36 chr1 90539432 90539487 -191654177 - MER3 DNA MER1_type -119 90 38 * 190 286 214 0 chr1 90539992 90540076 -191653588 - MIR SINE MIR -37 225 124 28 0 0 0 chr1 90541055 90541083 -191652581 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr1 90541305 90541349 -191652315 + AT_rich Low_complexity Low_complexity 1 44 0 434 115 0 39 chr1 90541779 90541857 -191651807 + MER53 DNA DNA 111 185 -4 193 299 35 81 chr1 90543346 90543433 -191650231 + MIR3 SINE MIR 110 192 -16 1740 170 18 0 chr1 90543636 90543918 -191649746 + AluJb SINE Alu 1 287 -25 1719 166 7 13 chr1 90544177 90544484 -191649180 - AluJb SINE Alu -7 305 1 420 380 80 12 chr1 90544501 90544825 -191648839 + L2 LINE L2 2365 2710 -604 645 203 8 0 chr1 90544868 90545001 -191648663 - AluJo SINE Alu -178 134 1 492 308 52 55 chr1 90545221 90545653 -191648011 + LTR33 LTR ERVL 46 516 -5 219 298 79 112 chr1 90545665 90545714 -191647950 - L2 LINE L2 -1018 2296 2247 1233 45 0 0 chr1 90545714 90545868 -191647796 + L1PA4 LINE L1 5999 6152 -3 219 298 79 112 chr1 90545868 90546123 -191647541 - L2 LINE L2 -1067 2247 2002 265 339 50 59 chr1 90547304 90547525 -191646139 + MIR SINE MIR 42 260 -2 277 185 19 0 chr1 90547763 90547817 -191645847 + MER5B DNA MER1_type 1 55 -123 23 68 0 0 chr1 90549948 90549992 -191643672 + AT_rich Low_complexity Low_complexity 1 44 0 21 71 0 0 chr1 90551180 90551222 -191642442 + AT_rich Low_complexity Low_complexity 1 42 0 222 368 38 15 chr1 90552458 90552591 -191641073 + L2 LINE L2 3176 3311 -2 373 293 60 35 chr1 90552757 90552873 -191640791 - L2 LINE L2 -5 3267 3149 340 307 44 18 chr1 90552891 90553005 -191640659 + MER5A DNA MER1_type 70 186 -3 23 0 0 0 chr1 90553029 90553052 -191640612 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr1 90553216 90553254 -191640410 + AT_rich Low_complexity Low_complexity 1 38 0 301 202 67 45 chr1 90553273 90553362 -191640302 + L1MC4 LINE L1 6615 6705 -1337 2066 120 0 40 chr1 90553446 90553770 -191639894 - AluSq SINE Alu -2 311 1 4072 168 51 6 chr1 90554345 90555136 -191638528 - LTR1B LTR ERV1 0 826 1 25 65 0 0 chr1 90555488 90555534 -191638130 + AT_rich Low_complexity Low_complexity 1 46 0 26 30 0 0 chr1 90555584 90555617 -191638047 + AT_rich Low_complexity Low_complexity 1 33 0 215 264 62 23 chr1 90557517 90557646 -191636018 + (CATATA)n Simple_repeat Simple_repeat 3 136 0 325 293 0 0 chr1 90557983 90558058 -191635606 - L2 LINE L2 -16 3256 3182 298 277 12 0 chr1 90559241 90559324 -191634340 - MIR SINE MIR -1 261 178 17845 67 5 1 chr1 90559661 90562798 -191630866 + L1PA6 LINE L1 3013 6150 -4 667 218 77 27 chr1 90562812 90563048 -191630616 + L1ME1 LINE L1 3510 3767 -2379 830 185 40 52 chr1 90563051 90563224 -191630440 + Tigger2a DNA MER2_type 1 171 -263 1437 203 0 16 chr1 90563225 90563530 -191630134 + L1MC1 LINE L1 6034 6333 0 2044 261 45 55 chr1 90563546 90564153 -191629511 + L1ME1 LINE L1 5296 5894 -272 2264 90 3 3 chr1 90564153 90564454 -191629210 + AluY SINE Alu 1 301 -10 2044 261 45 55 chr1 90564454 90564707 -191628957 + L1ME1 LINE L1 5894 6148 -18 2883 58 3 8 chr1 90564720 90565101 -191628563 - L1PA5 LINE L1 -3 6151 5773 1201 183 0 33 chr1 90565123 90565336 -191628328 - AluJb SINE Alu -20 292 87 223 365 117 7 chr1 90565370 90565507 -191628157 - MIR SINE MIR -89 173 22 212 233 14 0 chr1 90565943 90566016 -191627648 + (TA)n Simple_repeat Simple_repeat 1 74 0 23 54 0 0 chr1 90566270 90566307 -191627357 + AT_rich Low_complexity Low_complexity 1 37 0 226 359 145 7 chr1 90566431 90566576 -191627088 + L2 LINE L2 2866 3030 -283 190 293 19 129 chr1 90567155 90567411 -191626253 + L2 LINE L2 3077 3304 -9 21 57 0 0 chr1 90568143 90568178 -191625486 + AT_rich Low_complexity Low_complexity 1 35 0 282 179 13 51 chr1 90568308 90568386 -191625278 - MER116 DNA Mariner 0 80 6 34 79 0 0 chr1 90568433 90568509 -191625155 + AT_rich Low_complexity Low_complexity 1 76 0 2505 65 0 0 chr1 90569822 90570128 -191623536 + AluY SINE Alu 1 306 -5 396 0 0 0 chr1 90570128 90570172 -191623492 + (TA)n Simple_repeat Simple_repeat 2 45 0 331 314 7 20 chr1 90570193 90570346 -191623318 + CT-rich Low_complexity Low_complexity 3 153 0 982 241 90 54 chr1 90570523 90571304 -191622360 + L1MD3 LINE L1 7076 7989 -6 21 36 0 0 chr1 90571657 90571685 -191621979 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr1 90571721 90571769 -191621895 + AT_rich Low_complexity Low_complexity 1 48 0 594 267 6 17 chr1 90572369 90572545 -191621119 + MER45A DNA AcHobo 1 174 -4 2587 45 0 0 chr1 90573990 90574299 -191619365 + AluY SINE Alu 1 309 -2 436 257 171 49 chr1 90575997 90576374 -191617290 + MLT1H LTR MaLR 76 498 -57 2528 30 0 7 chr1 90576374 90576672 -191616992 - AluY SINE Alu -15 296 1 436 257 171 49 chr1 90576672 90576729 -191616935 + MLT1H LTR MaLR 498 547 -8 2191 115 0 0 chr1 90576838 90577134 -191616530 - AluSg SINE Alu -14 296 1 195 69 0 0 chr1 90577910 90577939 -191615725 + (A)n Simple_repeat Simple_repeat 1 29 0 1638 224 53 8 chr1 90577953 90578332 -191615332 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr1 90578800 90578829 -191614835 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr1 90579590 90579621 -191614043 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 90579796 90579818 -191613846 + AT_rich Low_complexity Low_complexity 1 22 0 6320 196 32 36 chr1 90580034 90580248 -191613416 - L1MC3 LINE L1 0 7785 7572 1078 187 49 113 chr1 90580248 90580638 -191613026 + MLT1A1 LTR MaLR 1 365 0 6320 196 32 36 chr1 90580638 90581934 -191611730 - L1MC3 LINE L1 -213 7572 6282 23 68 0 0 chr1 90582923 90582967 -191610697 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr1 90583034 90583069 -191610595 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 90583430 90583466 -191610198 + AT_rich Low_complexity Low_complexity 1 36 0 683 253 107 96 chr1 90584654 90585038 -191608626 - MER115 DNA AcHobo -57 636 249 331 301 49 24 chr1 90585094 90585217 -191608447 - MER115 DNA AcHobo -567 126 1 189 0 0 0 chr1 90585266 90585287 -191608377 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 220 289 94 94 chr1 90585376 90585504 -191608160 - L2 LINE L2 -212 3060 2933 1944 206 23 5 chr1 90585956 90586345 -191607319 + MLT2C2 LTR ERVL 1 396 -68 1456 225 77 3 chr1 90586412 90586736 -191606928 - MER7A DNA MER2_type 0 346 1 512 53 53 0 chr1 90586845 90586921 -191606743 + MADE1 DNA Mariner 1 80 0 204 216 0 0 chr1 90587379 90587430 -191606234 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 694 81 0 0 chr1 90587617 90587716 -191605948 + AluY SINE Alu 203 301 -10 1892 145 101 28 chr1 90587774 90588404 -191605260 + LTR1 LTR ERV1 1 785 0 1758 236 106 42 chr1 90588642 90589192 -191604472 + MLT1E LTR MaLR 1 585 -8 374 266 35 65 chr1 90589207 90589376 -191604288 + MLT1E-int LTR MaLR 11 174 -1561 3374 215 66 27 chr1 90589384 90590267 -191603397 - Charlie1a DNA MER1_type -538 917 1 242 116 23 0 chr1 90590868 90590911 -191602753 + (TA)n Simple_repeat Simple_repeat 2 45 0 261 0 0 0 chr1 90590946 90590975 -191602689 + (TG)n Simple_repeat Simple_repeat 2 30 0 390 351 153 8 chr1 90591843 90592140 -191601524 - L2 LINE L2 -217 3096 2745 275 176 44 0 chr1 90592154 90592222 -191601442 - Charlie1 DNA MER1_type -1089 1672 1602 290 292 14 29 chr1 90592228 90592437 -191601227 - L1ME LINE L1 -5217 988 783 484 353 96 16 chr1 90592854 90593228 -191600436 - L1ME LINE L1 -5950 446 43 733 264 87 15 chr1 90593249 90593543 -191600121 + L2 LINE L2 2311 2669 -645 309 89 0 0 chr1 90593641 90593686 -191599978 + (TG)n Simple_repeat Simple_repeat 1 45 0 254 178 0 0 chr1 90593691 90593736 -191599928 - L1MC4 LINE L1 -1339 6703 6659 271 315 19 0 chr1 90593760 90593868 -191599796 + L1MEc LINE L1 1959 2068 -4328 325 226 0 69 chr1 90593874 90593976 -191599688 - L1MC4 LINE L1 -1338 6704 6610 892 329 51 16 chr1 90594119 90594493 -191599171 - L2 LINE L2 -1172 2142 1756 3386 158 65 6 chr1 90594596 90595237 -191598427 - L1MB3 LINE L1 0 6183 5505 3753 229 56 20 chr1 90595237 90596866 -191596798 - L1M LINE L1 -747 5399 2289 325 238 84 104 chr1 90599482 90599684 -191593980 - L2 LINE L2 0 3313 3116 38 22 0 0 chr1 90600396 90600441 -191593223 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr1 90600704 90600730 -191592934 + AT_rich Low_complexity Low_complexity 1 26 0 1693 370 40 55 chr1 90600730 90601776 -191591888 + L2 LINE L2 632 1661 -1653 1429 273 63 4 chr1 90601826 90602287 -191591377 - L1ME3A LINE L1 -5 6165 5678 1004 311 116 65 chr1 90602430 90603417 -191590247 + L2 LINE L2 2200 3246 -67 1568 185 3 20 chr1 90603512 90603809 -191589855 - AluJo SINE Alu -20 292 1 181 352 0 0 chr1 90604441 90604512 -191589152 + MIR SINE MIR 71 141 -121 190 296 56 28 chr1 90604522 90604593 -191589071 - L2 LINE L2 0 3313 3241 226 247 104 0 chr1 90604934 90605011 -191588653 - L2 LINE L2 0 3272 3188 243 282 26 0 chr1 90605071 90605143 -191588521 - MIR SINE MIR -37 225 152 249 290 123 45 chr1 90605143 90605298 -191588366 + MIR SINE MIR 2 168 -94 538 285 13 13 chr1 90605407 90605558 -191588106 - MIR SINE MIR -110 152 2 204 355 14 57 chr1 90608303 90608444 -191585220 - L2 LINE L2 -258 3055 2921 194 222 44 0 chr1 90608782 90608827 -191584837 + L2 LINE L2 3267 3313 0 233 301 19 0 chr1 90610238 90610341 -191583323 + MER103 DNA DNA 2 106 -60 2222 109 42 42 chr1 90610541 90610898 -191582766 + LTR18A LTR ERVL 1 357 0 2275 186 9 11 chr1 90610913 90611354 -191582310 + HERVL18 LTR ERVL 10 449 -5598 728 212 6 56 chr1 90611353 90611532 -191582132 + HERVL18 LTR ERVL 1150 1319 -4728 * 1220 151 16 0 chr1 90611526 90611718 -191581946 + HERVL18 LTR ERVL 1616 1810 -4237 * 1283 150 29 2 chr1 90611717 90611986 -191581678 + HERVL18 LTR ERVL 2119 2452 -3595 * 5191 151 36 2 chr1 90611985 90612817 -191580847 + HERVL18 LTR ERVL 2721 3580 -2467 674 106 11 0 chr1 90612818 90612912 -191580752 + HERVL18 LTR ERVL 4394 4488 -1559 3132 199 195 121 chr1 90612930 90614509 -191579155 - pTR5 LTR ERV1 0 2438 743 304 204 0 0 chr1 90614508 90614557 -191579107 + HERVL18 LTR ERVL 5219 5267 -780 * 250 178 0 0 chr1 90614557 90614602 -191579062 + HERVL18 LTR ERVL 5946 5990 -57 2239 145 23 6 chr1 90614714 90615065 -191578599 + LTR18A LTR ERVL 1 357 0 22 0 0 0 chr1 90615173 90615195 -191578469 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 90615241 90615271 -191578393 + AT_rich Low_complexity Low_complexity 1 30 0 26 50 0 0 chr1 90615679 90615719 -191577945 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr1 90616094 90616130 -191577534 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr1 90616439 90616475 -191577189 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr1 90616569 90616611 -191577053 + AT_rich Low_complexity Low_complexity 1 42 0 23 86 0 0 chr1 90617364 90617422 -191576242 + AT_rich Low_complexity Low_complexity 1 58 0 259 236 42 0 chr1 90617768 90617840 -191575824 - HAL1b LINE L1 -39 1309 1235 23 0 0 0 chr1 90617883 90617906 -191575758 + AT_rich Low_complexity Low_complexity 1 23 0 353 274 94 0 chr1 90618195 90618301 -191575363 - L1ME3A LINE L1 -276 5894 5779 416 284 103 23 chr1 90618412 90618722 -191574942 - L1ME3A LINE L1 -537 5633 5299 443 286 88 79 chr1 90618853 90619272 -191574392 - L1ME3A LINE L1 -1096 5050 4628 192 77 0 0 chr1 90619284 90619310 -191574354 + (CA)n Simple_repeat Simple_repeat 1 26 0 459 307 100 20 chr1 90619521 90619985 -191573679 - L1ME3A LINE L1 -1787 4359 3863 1954 185 20 56 chr1 90620001 90620242 -191573422 - Tigger2a DNA MER2_type -2275 433 214 2287 123 24 24 chr1 90620242 90620617 -191573047 - THE1C LTR MaLR 0 375 1 1954 185 20 56 chr1 90620617 90620824 -191572840 - Tigger2a DNA MER2_type -2494 214 1 292 224 20 31 chr1 90620824 90620922 -191572742 + (TA)n Simple_repeat Simple_repeat 2 98 0 243 203 31 50 chr1 90620969 90621091 -191572573 - L1M4 LINE L1 -2191 3955 3833 32 57 0 0 chr1 90621110 90621163 -191572501 + AT_rich Low_complexity Low_complexity 1 53 0 580 345 39 45 chr1 90621163 90621289 -191572375 - L1M4 LINE L1 -3117 3029 2904 2356 95 0 0 chr1 90621289 90621595 -191572069 - AluY SINE Alu -5 306 1 580 345 39 45 chr1 90621595 90621932 -191571732 - L1M4 LINE L1 -3242 2904 2569 28 29 0 0 chr1 90623827 90623862 -191569802 + AT_rich Low_complexity Low_complexity 1 35 0 339 25 0 0 chr1 90623894 90623934 -191569730 + (CA)n Simple_repeat Simple_repeat 1 40 0 236 161 16 0 chr1 90624591 90624653 -191569011 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 193 337 108 24 chr1 90625060 90625143 -191568521 - L2 LINE L2 -40 3232 3143 633 291 30 43 chr1 90625197 90625427 -191568237 + MIR SINE MIR 36 262 0 291 368 0 0 chr1 90626075 90626162 -191567502 - MIR SINE MIR -109 153 67 192 282 183 28 chr1 90626609 90626751 -191566913 + MIR3 SINE MIR 42 205 -3 328 304 70 0 chr1 90627200 90627315 -191566349 + L2 LINE L2 3190 3312 -1 236 75 0 25 chr1 90627322 90627362 -191566302 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 304 311 46 49 chr1 90627644 90627950 -191565714 - L1MC/D LINE L1 -2238 5570 5266 2224 116 0 0 chr1 90627979 90628282 -191565382 - AluSg SINE Alu -7 303 1 1305 49 0 0 chr1 90628587 90628751 -191564913 - L1PA4 LINE L1 0 6155 5992 519 168 0 0 chr1 90628983 90629078 -191564586 - AluJ/FRAM SINE Alu -1 311 217 249 263 28 116 chr1 90629078 90629439 -191564225 - L1MC/D LINE L1 -1437 4709 4381 32 26 0 0 chr1 90630693 90630732 -191562932 + AT_rich Low_complexity Low_complexity 1 39 0 2189 89 3 7 chr1 90630902 90631193 -191562471 - AluSx SINE Alu -20 292 3 34 0 0 0 chr1 90631239 90631273 -191562391 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr1 90633602 90633626 -191560038 + AT_rich Low_complexity Low_complexity 1 24 0 377 284 122 54 chr1 90633748 90633970 -191559694 - L2 LINE L2 -1 3312 3076 1633 181 3 0 chr1 90634168 90634455 -191559209 + AluJb SINE Alu 1 288 -24 231 330 120 10 chr1 90634553 90634653 -191559011 + L2 LINE L2 3162 3272 0 24 0 0 0 chr1 90636693 90636717 -191556947 + AT_rich Low_complexity Low_complexity 1 24 0 7100 56 0 6 chr1 90637850 90638979 -191554685 + L1PA7 LINE L1 5022 6153 -1 658 321 65 12 chr1 90639531 90639777 -191553887 - MIR SINE MIR 0 262 4 499 243 18 9 chr1 90639939 90640050 -191553614 - L2 LINE L2 -1 3312 3201 2164 116 0 3 chr1 90641774 90642068 -191551596 + AluSc SINE Alu 1 293 -16 244 311 162 0 chr1 90642203 90642351 -191551313 - MIR SINE MIR -76 186 15 207 0 0 0 chr1 90742644 90742667 -191450997 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr1 90742981 90743003 -191450661 + (T)n Simple_repeat Simple_repeat 1 22 0 2309 94 3 0 chr1 90743908 90744217 -191449447 - AluSp SINE Alu -2 311 2 322 272 96 29 chr1 90744220 90744356 -191449308 - L2 LINE L2 -534 2780 2636 367 250 125 0 chr1 90745528 90745640 -191448024 - L1ME3A LINE L1 -51 6119 5994 479 263 257 11 chr1 90745647 90745822 -191447842 - HAL1 LINE L1 -1696 811 594 360 358 87 13 chr1 90745893 90746203 -191447461 - HAL1 LINE L1 -2044 463 131 25 31 0 0 chr1 90746415 90746447 -191447217 + AT_rich Low_complexity Low_complexity 1 32 0 1042 302 121 56 chr1 90746462 90746892 -191446772 - HAL1 LINE L1 -604 1903 1502 243 0 0 0 chr1 90746892 90746919 -191446745 + (TG)n Simple_repeat Simple_repeat 2 28 0 1042 302 121 56 chr1 90746919 90747809 -191445855 - HAL1 LINE L1 -1005 1502 497 451 349 45 27 chr1 90747827 90748159 -191445505 - HAL1 LINE L1 -2112 395 58 252 294 65 11 chr1 90748175 90748267 -191445397 + L2 LINE L2 3198 3294 -19 195 69 0 0 chr1 90749108 90749137 -191444527 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 73 24 0 chr1 90751314 90751355 -191442309 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 371 318 123 18 chr1 90751921 90752091 -191441573 + MIR3 SINE MIR 2 189 -19 259 255 128 71 chr1 90752135 90752276 -191441388 + L2 LINE L2 3160 3308 -5 315 267 69 0 chr1 90752972 90753073 -191440591 + L1MC4 LINE L1 6612 6719 -1323 398 278 0 0 chr1 90754210 90754307 -191439357 - MIR SINE MIR 0 262 166 204 365 43 0 chr1 90754389 90754504 -191439160 - MIR SINE MIR -121 141 22 1866 154 0 16 chr1 90754765 90755077 -191438587 + AluSx SINE Alu 1 307 -5 448 305 106 35 chr1 90755189 90755415 -191438249 + MIR SINE MIR 20 261 -1 761 329 170 41 chr1 90755436 90755928 -191437736 - L3 LINE CR1 -10 1567 1140 2012 146 3 3 chr1 90755928 90756237 -191437427 - AluJb SINE Alu -3 309 1 761 329 170 41 chr1 90756237 90756663 -191437001 - L3 LINE CR1 -437 1140 531 284 288 0 0 chr1 90756690 90756749 -191436915 + L1MC/D LINE L1 5600 5658 -2150 2816 7 0 0 chr1 90757290 90757600 -191436064 - AluYa5 SINE Alu -1 310 1 363 385 50 33 chr1 90757936 90758359 -191435305 - L2 LINE L2 -340 2974 2545 187 349 34 74 chr1 90759475 90759624 -191434040 + MIR SINE MIR 63 205 -57 27 0 0 0 chr1 90759654 90759681 -191433983 + AT_rich Low_complexity Low_complexity 1 27 0 2039 123 150 11 chr1 90762772 90763145 -191430519 - MSTA LTR MaLR -3 425 1 8948 151 20 34 chr1 90763145 90764746 -191428918 - MSTA-int LTR MaLR 0 1580 3 986 193 108 72 chr1 90764748 90764938 -191428726 - MSTA LTR MaLR 0 375 193 252 0 0 0 chr1 90764938 90764966 -191428698 + (GA)n Simple_repeat Simple_repeat 1 28 0 986 193 108 72 chr1 90764966 90765137 -191428527 - MSTA LTR MaLR -182 193 1 1947 153 0 0 chr1 90765801 90766095 -191427569 - AluSp SINE Alu -6 307 14 2130 130 44 8 chr1 90767160 90767522 -191426142 + THE1C LTR MaLR 1 375 0 200 367 31 41 chr1 90767668 90767766 -191425898 + MIR SINE MIR 32 128 -134 23 0 0 0 chr1 90768098 90768121 -191425543 + AT_rich Low_complexity Low_complexity 1 23 0 239 154 0 19 chr1 90768231 90768283 -191425381 + (TA)n Simple_repeat Simple_repeat 2 52 0 297 288 0 0 chr1 90768456 90768522 -191425142 - L2 LINE L2 0 3272 3207 292 352 62 31 chr1 90768604 90768766 -191424898 + MIR3 SINE MIR 35 201 -7 213 132 0 0 chr1 90768766 90768804 -191424860 + (TC)n Simple_repeat Simple_repeat 1 38 0 28 102 0 0 chr1 90768907 90769005 -191424659 + AT_rich Low_complexity Low_complexity 1 98 0 1020 264 56 30 chr1 90769129 90769592 -191424072 + MLT1E LTR MaLR 25 593 0 182 306 111 56 chr1 90769868 90770048 -191423616 - L2 LINE L2 -475 2839 2650 785 222 0 23 chr1 90770783 90770954 -191422710 + FRAM SINE Alu 1 165 -11 348 24 0 0 chr1 90771221 90771262 -191422402 + (TG)n Simple_repeat Simple_repeat 2 42 0 856 141 0 0 chr1 90771263 90771391 -191422273 - AluSg/x SINE Alu -25 287 160 189 0 0 0 chr1 90771631 90771652 -191422012 + (TG)n Simple_repeat Simple_repeat 2 22 0 1681 145 67 0 chr1 90771653 90771922 -191421742 - AluSx SINE Alu -25 287 1 301 353 67 8 chr1 90771984 90772103 -191421561 - MIR SINE MIR -81 127 1 731 226 57 64 chr1 90772818 90773114 -191420550 + MLT1H LTR MaLR 42 335 -214 2361 173 19 2 chr1 90773137 90773558 -191420106 + MSTA LTR MaLR 1 428 0 2122 125 24 24 chr1 90773587 90773962 -191419702 + THE1C LTR MaLR 1 375 0 710 215 0 0 chr1 90773990 90774120 -191419544 + FLAM_A SINE Alu 4 133 0 255 315 28 0 chr1 90774120 90774217 -191419447 + MLT1H LTR MaLR 441 543 -12 1774 199 96 29 chr1 90774560 90774946 -191418718 + MLT2B3 LTR ERVL 1 412 -142 261 145 0 0 chr1 90774975 90775037 -191418627 + (TA)n Simple_repeat Simple_repeat 2 63 0 776 182 0 88 chr1 90775037 90775207 -191418457 + MLT2B3 LTR ERVL 400 554 0 188 236 56 67 chr1 90775935 90776024 -191417640 + L2 LINE L2 3182 3269 -3 808 256 118 99 chr1 90776764 90777364 -191416300 - MLT1G LTR MaLR 0 590 22 792 272 50 40 chr1 90777601 90777899 -191415765 + MLT2E LTR ERVL 312 612 -16 1742 264 104 38 chr1 90778017 90778816 -191414848 + L1MC4 LINE L1 7190 8041 -1 21 71 0 0 chr1 90779417 90779459 -191414205 + AT_rich Low_complexity Low_complexity 1 42 0 193 265 169 36 chr1 90779721 90779804 -191413860 - L2 LINE L2 -5 3308 3215 1983 147 2 117 chr1 90780328 90780521 -191413143 - Tigger2 DNA MER2_type 0 2718 2504 723 221 7 7 chr1 90780521 90780670 -191412994 - FRAM SINE Alu -15 151 3 1983 147 2 117 chr1 90780670 90780973 -191412691 - Tigger2 DNA MER2_type -214 2504 2 348 325 44 39 chr1 90781117 90781439 -191412225 - MLT1J LTR MaLR -64 447 82 1021 171 4 61 chr1 90781459 90781687 -191411977 - AluSg/x SINE Alu -11 301 87 223 321 73 9 chr1 90781818 90781927 -191411737 - L2 LINE L2 -221 3051 2936 355 227 165 0 chr1 90782075 90782172 -191411492 + FRAM SINE Alu 45 157 -9 229 236 0 34 chr1 90782204 90782293 -191411371 - L1M4 LINE L1 -886 5260 5175 352 216 0 11 chr1 90782307 90782395 -191411269 - L1M4 LINE L1 -3219 2927 2841 1891 128 4 11 chr1 90782419 90782700 -191410964 + AluSx SINE Alu 25 303 -9 2084 175 98 48 chr1 90782824 90783305 -191410359 - LTR22 LTR ERVK -4 505 1 1181 174 166 8 chr1 90783441 90783518 -191410146 + AluJb SINE Alu 3 66 -236 319 56 37 0 chr1 90783518 90783572 -191410092 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 1181 174 166 8 chr1 90783572 90783753 -191409911 + AluJb SINE Alu 66 302 0 1614 200 77 3 chr1 90787089 90787429 -191406235 + MLT1A1 LTR MaLR 1 365 0 1446 153 70 22 chr1 90787806 90788120 -191405544 - MER7A DNA MER2_type -19 327 1 239 409 56 7 chr1 90788120 90788262 -191405402 + L2 LINE L2 3123 3271 -1 2167 107 48 43 chr1 90788870 90789243 -191404421 + THE1C LTR MaLR 1 375 0 2080 116 0 27 chr1 90790289 90790602 -191403062 + AluSx SINE Alu 1 305 0 1759 350 92 22 chr1 90790984 90792306 -191401358 + L2 LINE L2 1486 2899 -415 363 44 0 0 chr1 90792436 90792481 -191401183 + (CA)n Simple_repeat Simple_repeat 2 46 0 811 315 40 22 chr1 90792548 90792872 -191400792 - MLT1J2 LTR MaLR -120 330 1 447 272 0 40 chr1 90792996 90793121 -191400543 + L2 LINE L2 3182 3301 -12 459 0 0 0 chr1 90795182 90795233 -191398431 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1141 229 27 116 chr1 90795367 90795961 -191397703 + L1MCc LINE L1 785 1325 -5098 315 0 0 0 chr1 90795967 90796002 -191397662 + (CA)n Simple_repeat Simple_repeat 2 36 0 680 245 29 0 chr1 90796165 90796304 -191397360 + MER5A DNA MER1_type 47 189 0 14265 173 46 88 chr1 90796686 90799627 -191394037 + L1PA16 LINE L1 2 2680 -4169 426 20 0 0 chr1 90799627 90799678 -191393986 + (CA)n Simple_repeat Simple_repeat 1 51 0 14265 173 46 88 chr1 90799678 90801032 -191392632 + L1PA16 LINE L1 2680 4090 -2759 5010 169 43 24 chr1 90801033 90802707 -191390957 + L1PA16 LINE L1 5182 6863 -6 28 48 0 0 chr1 90803009 90803051 -191390613 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 90803881 90803903 -191389761 + AT_rich Low_complexity Low_complexity 1 22 0 1934 158 10 3 chr1 90804048 90804346 -191389318 - AluSx SINE Alu -12 300 1 3216 216 12 33 chr1 90804579 90805328 -191388336 - MER44D DNA MER2_type 0 605 1 660 185 50 0 chr1 90805925 90806044 -191387620 + FLAM_C SINE Alu 1 125 -18 353 323 64 83 chr1 90806860 90807235 -191386429 + L3 LINE CR1 466 833 -744 22 0 0 0 chr1 90808380 90808402 -191385262 + AT_rich Low_complexity Low_complexity 1 22 0 225 306 142 22 chr1 90808919 90809053 -191384611 + L2 LINE L2 3163 3312 -1 196 389 61 22 chr1 90809722 90809902 -191383762 + L2 LINE L2 2553 2739 -575 1111 234 86 45 chr1 90810428 90810787 -191382877 + MLT1A2 LTR MaLR 1 374 0 2173 120 0 0 chr1 90811118 90811418 -191382246 - AluSx SINE Alu -7 305 6 24 67 0 0 chr1 90811729 90811774 -191381890 + AT_rich Low_complexity Low_complexity 1 45 0 274 328 88 28 chr1 90811842 90812196 -191381468 - L1ME LINE L1 -453 5668 5294 353 365 108 29 chr1 90812518 90812935 -191380729 - L2 LINE L2 -453 2861 2412 3634 169 115 3 chr1 90813169 90813911 -191379753 + LTR1B LTR ERV1 2 826 0 245 374 56 33 chr1 90814435 90814740 -191378924 - L2 LINE L2 -998 2316 2005 624 191 9 0 chr1 90816425 90816535 -191377129 - Tigger3(Golem) DNA MER2_type -2918 111 1 455 292 58 54 chr1 90816539 90816766 -191376898 - MIR SINE MIR -14 248 21 468 175 41 0 chr1 90817243 90817340 -191376324 - LTR16A LTR ERVL -66 384 284 914 210 12 6 chr1 90817407 90817574 -191376090 - MER58A DNA MER1_type 0 168 1 24 67 0 0 chr1 90817952 90817997 -191375667 + AT_rich Low_complexity Low_complexity 1 45 0 1081 176 124 52 chr1 90818024 90818274 -191375390 + AluJo SINE Alu 1 268 -44 21 36 0 0 chr1 90818527 90818555 -191375109 + AT_rich Low_complexity Low_complexity 1 28 0 267 234 26 39 chr1 90818624 90818701 -191374963 + L2 LINE L2 3223 3298 -15 28 0 0 0 chr1 90819295 90819323 -191374341 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 90819433 90819469 -191374195 + AT_rich Low_complexity Low_complexity 1 36 0 413 246 92 108 chr1 90819565 90819980 -191373684 - MLT2C2 LTR ERVL 0 464 57 * 652 205 35 49 chr1 90819784 90819997 -191373667 - MLT1E3 LTR MaLR -337 317 57 211 197 0 26 chr1 90820812 90820888 -191372776 + GA-rich Low_complexity Low_complexity 1 74 0 259 329 14 14 chr1 90822016 90822162 -191371502 + GA-rich Low_complexity Low_complexity 4 149 0 1072 125 62 0 chr1 90822334 90822494 -191371170 + AluJb SINE Alu 134 303 -9 2006 174 123 7 chr1 90822518 90822931 -191370733 + LOR1b LTR ERV1 1 461 0 538 253 104 11 chr1 90823032 90823214 -191370450 - MER63A DNA MER1_type -8 202 4 2683 30 0 3 chr1 90824068 90824397 -191369267 - L1PA4 LINE L1 -2214 3932 3605 * 11555 43 2 7 chr1 90824396 90826464 -191367200 + L1PA4 LINE L1 3953 6008 -147 392 339 63 16 chr1 90827588 90827715 -191365949 - MIR SINE MIR -64 144 15 265 346 19 19 chr1 90828458 90828565 -191365099 - L2 LINE L2 -243 3070 2964 664 309 73 21 chr1 90828565 90828905 -191364759 - L2 LINE L2 -68 3245 2888 469 362 115 14 chr1 90828880 90829314 -191364350 - L2 LINE L2 -549 2765 2288 * 22 0 0 0 chr1 90829432 90829454 -191364210 + AT_rich Low_complexity Low_complexity 1 22 0 1387 262 50 46 chr1 90830485 90830988 -191362676 + MLT1E3 LTR MaLR 112 616 -8 1227 277 42 15 chr1 90831015 90831416 -191362248 - LTR40a LTR ERVL -10 509 98 24 0 0 0 chr1 90831611 90831635 -191362029 + AT_rich Low_complexity Low_complexity 1 24 0 295 117 17 33 chr1 90833208 90833268 -191360396 + L1P LINE L1 5024 5082 -1064 27 29 0 0 chr1 90834469 90834503 -191359161 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr1 90836229 90836257 -191357407 + AT_rich Low_complexity Low_complexity 1 28 0 2619 39 0 0 chr1 90836473 90836784 -191356880 + AluY SINE Alu 1 311 0 229 186 0 0 chr1 90837206 90837249 -191356415 + (CTA)n Simple_repeat Simple_repeat 2 44 0 523 327 47 0 chr1 90837250 90837464 -191356200 - MIR SINE MIR -8 254 31 1878 147 7 0 chr1 90837570 90837856 -191355808 + AluSx SINE Alu 1 288 -24 236 141 141 71 chr1 90838260 90838345 -191355319 + L1ME4a LINE L1 5967 6057 -64 229 220 0 0 chr1 90838672 90838722 -191354942 + (TA)n Simple_repeat Simple_repeat 2 51 0 247 138 15 15 chr1 90839340 90839405 -191354259 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 222 288 55 0 chr1 90841558 90841631 -191352033 + MIR SINE MIR 96 172 -90 817 178 151 11 chr1 90841770 90841955 -191351709 + AluJb SINE Alu 85 295 -17 422 224 0 0 chr1 90842927 90843012 -191350652 + MER63 DNA MER1_type 676 760 -302 737 310 121 23 chr1 90843036 90843672 -191349992 + L2 LINE L2 2614 3311 -2 664 210 119 41 chr1 90844796 90845039 -191348625 + L1ME LINE L1 4673 4934 -1212 1086 163 0 0 chr1 90845039 90845288 -191348376 + (TA)n Simple_repeat Simple_repeat 1 249 0 227 152 0 0 chr1 90845288 90845334 -191348330 - LTR66 LTR ERVL -171 439 394 200 216 0 0 chr1 90845334 90845371 -191348293 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 460 259 76 91 chr1 90845445 90845848 -191347816 + L1ME LINE L1 5281 5676 -486 2257 66 16 35 chr1 90845848 90846165 -191347499 + AluY SINE Alu 1 311 0 460 259 76 91 chr1 90846165 90846275 -191347389 + L1ME LINE L1 5676 5786 -376 601 216 11 22 chr1 90846310 90846783 -191346881 + (CATATA)n Simple_repeat Simple_repeat 1 467 0 216 327 9 36 chr1 90846794 90846904 -191346760 + (CATATA)n Simple_repeat Simple_repeat 3 109 0 * 440 345 29 0 chr1 90846859 90847033 -191346631 + (CACG)n Simple_repeat Simple_repeat 2 180 0 255 333 9 18 chr1 90847040 90847151 -191346513 + (CATA)n Simple_repeat Simple_repeat 3 112 0 * 405 249 48 0 chr1 90847102 90847267 -191346397 + (TA)n Simple_repeat Simple_repeat 1 173 0 1521 169 21 25 chr1 90847675 90847959 -191345705 - MLT2B1 LTR ERVL -237 283 1 23 0 0 0 chr1 90848170 90848193 -191345471 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 90848613 90848645 -191345019 + AT_rich Low_complexity Low_complexity 1 32 0 25019 82 10 6 chr1 90849714 90851572 -191342092 + L1P3 LINE L1 1826 3674 -2480 279 0 0 0 chr1 90851572 90851603 -191342061 + (CA)n Simple_repeat Simple_repeat 2 32 0 25019 82 10 6 chr1 90851603 90853564 -191340100 + L1P3 LINE L1 3674 5662 -492 4201 71 0 2 chr1 90853566 90854117 -191339547 + L1PA7 LINE L1 5599 6148 -6 2194 82 7 0 chr1 90854331 90854653 -191339011 + AluSx SINE Alu 1 324 0 237 65 0 0 chr1 90855429 90855460 -191338204 + (TA)n Simple_repeat Simple_repeat 1 31 0 979 178 30 10 chr1 90856312 90856514 -191337150 + MER3 DNA MER1_type 4 209 0 211 143 0 24 chr1 90857244 90857286 -191336378 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 271 326 34 0 chr1 90857402 90857491 -191336173 + MIR SINE MIR 141 232 -30 22 35 0 0 chr1 90858287 90858316 -191335348 + AT_rich Low_complexity Low_complexity 1 29 0 207 278 19 0 chr1 90858789 90858843 -191334821 + (TAG)n Simple_repeat Simple_repeat 1 55 0 3876 113 9 0 chr1 90859627 90860321 -191333343 - L1PA8A LINE L1 -657 5474 4775 4836 86 1 5 chr1 90860323 90860977 -191332687 + L1PA8A LINE L1 5479 6130 -1 261 204 0 0 chr1 90862611 90862660 -191331004 + MIR SINE MIR 214 262 0 258 239 23 23 chr1 90863466 90863554 -191330110 + CT-rich Low_complexity Low_complexity 1 88 0 2401 78 0 3 chr1 90863610 90863917 -191329747 - AluSc SINE Alu -3 306 1 511 218 97 36 chr1 90864474 90864639 -191329025 - MIR SINE MIR -57 205 31 206 202 32 11 chr1 90866870 90866964 -191326700 + CT-rich Low_complexity Low_complexity 1 96 0 1847 106 91 7 chr1 90868004 90868278 -191325386 + AluSx SINE Alu 5 301 -11 201 98 0 49 chr1 90868787 90868828 -191324836 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 574 254 58 100 chr1 90868878 90869138 -191324526 - MLT1H LTR MaLR -171 378 130 567 278 45 90 chr1 90869243 90869488 -191324176 - MIR SINE MIR -28 234 1 1147 311 54 32 chr1 90871352 90871911 -191321753 + HERV16 LTR ERVL 8 578 -4418 767 260 42 5 chr1 90872000 90872192 -191321472 + MLT1A1 LTR MaLR 167 365 0 297 120 20 0 chr1 90872656 90872706 -191320958 - LTR47A LTR ERVL 0 452 402 702 347 42 3 chr1 90872733 90873018 -191320646 + LTR16A LTR ERVL 126 421 -29 881 273 55 9 chr1 90873664 90874008 -191319656 - L1ME3 LINE L1 -2 6094 5735 366 215 99 111 chr1 90874139 90874269 -191319395 - LTR68 LTR ERV1 -274 466 337 1811 168 24 0 chr1 90874269 90874561 -191319103 + AluJb SINE Alu 1 299 -13 366 215 99 111 chr1 90874561 90874602 -191319062 - LTR68 LTR ERV1 -403 337 297 241 175 0 18 chr1 90874735 90874792 -191318872 - LTR68 LTR ERV1 -682 58 3 861 322 23 3 chr1 90874801 90875105 -191318559 - L1ME3 LINE L1 -359 5737 5428 331 353 32 13 chr1 90875118 90875274 -191318390 - L1ME3 LINE L1 -4803 1458 1300 228 265 43 17 chr1 90875341 90875458 -191318206 - L1ME3 LINE L1 -4862 1208 1089 651 283 108 83 chr1 90875542 90876022 -191317642 + MLT1H LTR MaLR 50 541 -8 328 267 123 15 chr1 90876061 90876387 -191317277 - L1ME3 LINE L1 -5053 1017 657 1750 182 39 17 chr1 90876400 90876757 -191316907 + MLT1A1 LTR MaLR 1 365 0 934 49 58 4 chr1 90877348 90877579 -191316085 + (TAGA)n Simple_repeat Simple_repeat 1 243 0 706 225 136 23 chr1 90877597 90877855 -191315809 - L2 LINE L2 -1263 2051 1765 3771 170 27 14 chr1 90878271 90879005 -191314659 - L1PA16 LINE L1 -9 6157 5414 294 320 39 29 chr1 90879006 90879109 -191314555 + L2 LINE L2 3169 3272 0 347 0 0 23 chr1 90879764 90879808 -191313856 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1884 136 11 4 chr1 90879811 90880091 -191313573 - AluSx SINE Alu -30 282 1 222 325 92 33 chr1 90880528 90880648 -191313016 - L2 LINE L2 0 3272 3146 508 71 0 0 chr1 90880661 90880731 -191312933 + Alu SINE Alu 1 70 -240 2102 89 4 11 chr1 90880731 90881011 -191312653 + AluY SINE Alu 20 297 -14 267 267 111 50 chr1 90882576 90882756 -191310908 + L1ME LINE L1 5629 5819 -302 333 333 202 25 chr1 90882808 90883174 -191310490 - L2 LINE L2 0 3313 2883 1284 256 70 50 chr1 90883386 90884090 -191309574 - Charlie7 DNA MER1_type -81 2531 1814 1644 188 98 118 chr1 90884090 90884268 -191309396 - L1MD3 LINE L1 -86 7909 7729 2402 123 11 26 chr1 90884268 90884649 -191309015 - THE1C LTR MaLR 0 375 1 1644 188 98 118 chr1 90884649 90885061 -191308603 - L1MD3 LINE L1 -266 7729 7331 643 380 12 4 chr1 90885951 90886196 -191307468 + MIR SINE MIR 3 249 -13 29 0 0 0 chr1 90888840 90888869 -191304795 + AT_rich Low_complexity Low_complexity 1 29 0 191 303 214 0 chr1 90889602 90889691 -191303973 + L2 LINE L2 3165 3272 0 538 292 55 118 chr1 90890542 90891018 -191302646 - MLT1J LTR MaLR -63 448 3 24 53 0 0 chr1 90892596 90892634 -191301030 + AT_rich Low_complexity Low_complexity 1 38 0 7154 132 34 42 chr1 90892636 90893945 -191299719 + HSMAR2 DNA Mariner 2 1299 -3 255 275 34 90 chr1 90894994 90895172 -191298492 + MLT1H LTR MaLR 110 277 -272 240 297 79 0 chr1 90895406 90895507 -191298157 + MLT1H LTR MaLR 475 583 -7 48 67 0 0 chr1 90895769 90895859 -191297805 + AT_rich Low_complexity Low_complexity 1 90 0 731 273 83 77 chr1 90897517 90898034 -191295630 - MLT1G1 LTR MaLR 0 595 76 1484 214 111 14 chr1 90899272 90899697 -191293967 - MLT1C LTR MaLR 0 467 2 338 271 84 59 chr1 90900757 90900960 -191292704 - L1M4 LINE L1 -925 5221 5014 226 254 16 0 chr1 90901085 90901148 -191292516 - MER92C LTR ERV1 0 554 491 230 222 86 74 chr1 90901330 90901411 -191292253 - MER92B LTR ERV1 -554 82 1 255 263 216 5 chr1 90901478 90901668 -191291996 - L1M4 LINE L1 -1355 4791 4562 416 274 66 54 chr1 90901933 90902080 -191291584 - L1ME LINE L1 -316 5805 5652 897 223 104 0 chr1 90902080 90902282 -191291382 + MER58A DNA MER1_type 1 223 -1 416 274 66 54 chr1 90902282 90902375 -191291289 - L1ME LINE L1 -469 5652 5562 1610 37 0 41 chr1 90903977 90904195 -191289469 - L1PA5 LINE L1 -17 6137 5929 267 267 111 50 chr1 90905413 90905593 -191288071 + L1ME LINE L1 5629 5819 -302 364 336 169 22 chr1 90905645 90906166 -191287498 - L2 LINE L2 0 3313 2709 375 297 29 43 chr1 90906277 90906415 -191287249 + L2 LINE L2 3137 3272 0 13005 147 21 8 chr1 90906457 90908592 -191285072 + Tigger1 DNA MER2_type 1 2162 -256 6401 146 67 7 chr1 90908592 90909748 -191283916 + Tigger3b DNA MER2_type 1 1225 -6 1545 187 35 47 chr1 90911442 90911785 -191281879 - MER2 DNA MER2_type -5 340 2 24 91 0 0 chr1 90911791 90911857 -191281807 + AT_rich Low_complexity Low_complexity 1 66 0 631 258 110 14 chr1 90912394 90912603 -191281061 + MIR SINE MIR 32 260 -2 1578 187 24 3 chr1 90913150 90913439 -191280225 + AluJb SINE Alu 1 295 -17 40 0 0 0 chr1 90913439 90913479 -191280185 + AT_rich Low_complexity Low_complexity 1 40 0 363 278 102 0 chr1 90914202 90914310 -191279354 + L2 LINE L2 3150 3268 -4 426 53 0 0 chr1 90914613 90914670 -191278994 + (CA)n Simple_repeat Simple_repeat 1 57 0 339 303 158 13 chr1 90914744 90914896 -191278768 + MIR SINE MIR 38 211 -51 2321 51 0 0 chr1 90916414 90916690 -191276974 - AluY SINE Alu -10 301 26 1275 275 62 33 chr1 90917214 90917964 -191275700 - L1ME LINE L1 -391 5771 4998 688 266 122 43 chr1 90917961 90918337 -191275327 + L1ME3 LINE L1 5751 6156 -6 * 1337 189 89 86 chr1 90918894 90919315 -191274349 - MLT1B LTR MaLR 0 505 1 1062 206 14 23 chr1 90920200 90920418 -191273246 - AluJo SINE Alu -10 302 87 2276 97 0 3 chr1 90920773 90921071 -191272593 - AluSx SINE Alu -15 297 1 1686 205 16 30 chr1 90921218 90921589 -191272075 + MLT1B LTR MaLR 3 368 -22 229 404 18 0 chr1 90921948 90922062 -191271602 - MIR SINE MIR -76 132 17 216 269 75 32 chr1 90923276 90923369 -191270295 - MIR SINE MIR -108 154 58 277 122 0 0 chr1 90924141 90924182 -191269482 + 5S rRNA rRNA 2 42 -79 27 29 0 0 chr1 90924310 90924344 -191269320 + AT_rich Low_complexity Low_complexity 1 34 0 2030 129 10 0 chr1 90925210 90925519 -191268145 - AluSx SINE Alu 0 312 1 2030 136 7 0 chr1 90925539 90925848 -191267816 - AluSp SINE Alu -1 312 2 264 30 0 0 chr1 90925858 90925891 -191267773 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 397 159 16 0 chr1 90925892 90925955 -191267709 - FLAM SINE Alu -15 118 55 415 319 79 28 chr1 90925985 90926166 -191267498 + MIR SINE MIR 28 223 -39 2038 131 0 26 chr1 90926166 90926479 -191267185 + AluSx SINE Alu 1 305 -7 415 319 79 28 chr1 90926479 90926513 -191267151 + MIR SINE MIR 223 254 -8 235 258 71 76 chr1 90927557 90927755 -191265909 + L1MCc LINE L1 1164 1515 -5063 * 5573 151 35 31 chr1 90927728 90929739 -191263925 + L1MA5 LINE L1 5080 7093 -2 706 276 61 71 chr1 90929824 90930593 -191263071 + L1MCc LINE L1 1679 2440 -4682 390 101 0 0 chr1 90930593 90930662 -191263002 + (TAAA)n Simple_repeat Simple_repeat 2 70 0 706 276 61 71 chr1 90930662 90930732 -191262932 + L1MCc LINE L1 2440 2509 -4613 353 234 102 29 chr1 90930775 90930912 -191262752 - L1M4 LINE L1 -3789 2357 2211 34 40 0 40 chr1 90931002 90931076 -191262588 + AT_rich Low_complexity Low_complexity 1 71 0 198 103 0 0 chr1 90931092 90931121 -191262543 + (TG)n Simple_repeat Simple_repeat 2 30 0 1415 191 84 76 chr1 90932173 90932555 -191261109 + MLT1B LTR MaLR 1 385 -5 237 108 0 0 chr1 90932852 90932889 -191260775 + (TA)n Simple_repeat Simple_repeat 2 38 0 43439 40 2 2 chr1 90933086 90939232 -191254432 - L1PA3 LINE L1 0 6155 5 306 308 148 22 chr1 90939980 90940162 -191253502 + MIR SINE MIR 2 206 -56 216 0 0 0 chr1 90940647 90940671 -191252993 + (A)n Simple_repeat Simple_repeat 1 24 0 1159 198 9 4 chr1 90940873 90941100 -191252564 + AluJb SINE Alu 83 310 -2 23 0 0 0 chr1 90943804 90943827 -191249837 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr1 90944246 90944292 -191249372 + AT_rich Low_complexity Low_complexity 1 46 0 200 345 12 0 chr1 90944496 90944580 -191249084 - MIR SINE MIR -3 259 175 276 359 55 21 chr1 90944589 90944734 -191248930 - MIR SINE MIR -64 198 49 21963 30 0 6 chr1 90945533 90948994 -191244670 + L1PA3 LINE L1 2702 6153 -2 1161 291 48 35 chr1 90949475 90950012 -191243652 + MLT1E3-int LTR MaLR 119 662 -709 493 263 43 97 chr1 90950159 90950437 -191243227 + MLT1E3-int LTR MaLR 1108 1370 -1 1508 219 84 77 chr1 90950438 90950994 -191242670 + MLT1E3 LTR MaLR 1 560 -64 576 174 0 0 chr1 90951101 90951222 -191242442 + GA-rich Low_complexity Low_complexity 3 123 0 24 53 0 0 chr1 90951544 90951582 -191242082 + AT_rich Low_complexity Low_complexity 1 38 0 28 79 0 0 chr1 90952170 90952233 -191241431 + AT_rich Low_complexity Low_complexity 1 63 0 639 288 60 0 chr1 90952376 90952591 -191241073 + MIR SINE MIR 3 230 -32 182 294 0 0 chr1 90952620 90952671 -191240993 - L2 LINE L2 -4 3309 3259 205 260 0 0 chr1 90953651 90953701 -191239963 + GA-rich Low_complexity Low_complexity 5 54 0 348 127 0 0 chr1 90953707 90953762 -191239902 + (GGGA)n Simple_repeat Simple_repeat 3 57 0 238 121 0 0 chr1 90954779 90954812 -191238852 - L2 LINE L2 -87 3226 3194 1351 107 56 183 chr1 90955111 90955467 -191238197 - AluSq SINE Alu 0 313 3 308 311 0 67 chr1 90955534 90955669 -191237995 - L2 LINE L2 -4 3309 3184 21 36 0 0 chr1 90956184 90956212 -191237452 + AT_rich Low_complexity Low_complexity 1 28 0 363 208 28 0 chr1 90956414 90956486 -191237178 - MER65C LTR ERV1 -379 82 9 1077 228 107 15 chr1 90956495 90956758 -191236906 + AluJo SINE Alu 1 287 -15 28 0 0 0 chr1 90956758 90956786 -191236878 + AT_rich Low_complexity Low_complexity 1 28 0 374 0 22 0 chr1 90957058 90957104 -191236560 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 569 316 92 42 chr1 90957139 90958192 -191235472 + L1MEd LINE L1 534 1536 -4681 706 264 145 7 chr1 90958468 90958744 -191234920 + MER5C DNA MER1_type 10 323 -1 617 304 55 68 chr1 90958831 90959246 -191234418 + L1MEd LINE L1 2074 2483 -3913 956 323 68 58 chr1 90959394 90960438 -191233226 + L1MEd LINE L1 3103 4157 -2058 404 182 11 0 chr1 90960456 90960544 -191233120 + (TATG)n Simple_repeat Simple_repeat 2 90 0 30 45 0 0 chr1 90960562 90960606 -191233058 + AT_rich Low_complexity Low_complexity 1 44 0 1376 259 22 6 chr1 90960889 90961248 -191232416 - MLT1A1 LTR MaLR 0 365 1 1959 116 17 7 chr1 90961559 90961852 -191231812 - AluSx SINE Alu -16 296 1 6233 129 32 84 chr1 90962056 90963354 -191230310 - Tigger3b DNA MER2_type 0 1231 2 2437 218 12 12 chr1 90964805 90965324 -191228340 + LTR53 LTR ERVL 1 519 0 28 0 0 0 chr1 90965333 90965361 -191228303 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr1 90966473 90966510 -191227154 + AT_rich Low_complexity Low_complexity 1 37 0 588 323 39 39 chr1 90967403 90967713 -191225951 - HERV16 LTR ERVL -4155 841 532 17586 173 60 25 chr1 90967717 90973826 -191219838 - L1 LINE L1 -1228 6337 17 1668 203 44 11 chr1 90974055 90974419 -191219245 + MLT2C2 LTR ERVL 1 376 -88 282 59 0 0 chr1 90974422 90974456 -191219208 + MLT2C2 LTR ERVL 487 520 0 1440 189 0 66 chr1 90974612 90974914 -191218750 - AluJo SINE Alu -30 282 1 281 274 8 17 chr1 90974925 90975042 -191218622 + L1MEd LINE L1 1031 1146 -5059 326 286 113 11 chr1 90975375 90975560 -191218104 + L1MEd LINE L1 2087 2290 -4106 35 0 0 0 chr1 90975603 90975638 -191218026 + AT_rich Low_complexity Low_complexity 1 35 0 778 173 65 0 chr1 90976205 90976344 -191217320 + FAM SINE Alu 20 167 -18 21 36 0 0 chr1 90976664 90976692 -191216972 + AT_rich Low_complexity Low_complexity 1 28 0 2018 126 47 41 chr1 90976985 90977349 -191216315 - THE1C LTR MaLR -9 366 1 222 37 0 0 chr1 90977529 90977556 -191216108 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 189 267 17 17 chr1 90978055 90978115 -191215549 + L2 LINE L2 3254 3313 0 225 0 0 0 chr1 90980072 90980097 -191213567 + (A)n Simple_repeat Simple_repeat 1 25 0 752 254 47 19 chr1 90980344 90980557 -191213107 - MER20 DNA MER1_type 0 219 1 267 215 0 0 chr1 90980830 90980895 -191212769 + (TATG)n Simple_repeat Simple_repeat 2 66 0 814 128 7 57 chr1 90980897 90981038 -191212626 - AluSg/x SINE Alu -20 289 156 1544 202 85 32 chr1 90981168 90981578 -191212086 - MSTB1 LTR MaLR 0 432 1 235 247 141 35 chr1 90981590 90981675 -191211989 - MIR SINE MIR -61 201 108 448 309 19 12 chr1 90983134 90983296 -191210368 - MLT1J2 LTR MaLR -286 164 2 25 0 0 0 chr1 90984211 90984236 -191209428 + AT_rich Low_complexity Low_complexity 1 25 0 392 270 70 79 chr1 90984459 90984674 -191208990 + MER112 DNA MER1_type 5 217 -43 208 300 0 0 chr1 90984967 90985017 -191208647 + MIR SINE MIR 109 158 -104 448 272 95 41 chr1 90985430 90985599 -191208065 - MIR SINE MIR -71 191 14 740 192 75 0 chr1 90985754 90985900 -191207764 - MER3 DNA MER1_type 0 209 53 32 103 0 0 chr1 90986135 90986251 -191207413 + AT_rich Low_complexity Low_complexity 1 116 0 260 298 105 18 chr1 90986453 90986567 -191207097 + L2 LINE L2 3190 3313 0 264 298 50 33 chr1 90987094 90987215 -191206449 - MIR SINE MIR -54 208 86 391 321 44 28 chr1 90987558 90987879 -191205785 - L1ME4a LINE L1 -263 5858 5533 299 286 116 20 chr1 90988420 90988567 -191205097 + MIR SINE MIR 91 251 -11 219 379 0 0 chr1 90989930 90990062 -191203602 + (CCA)n Simple_repeat Simple_repeat 1 132 0 380 340 77 7 chr1 90990983 90991203 -191202461 - MIR SINE MIR -21 241 6 207 290 84 19 chr1 90991388 90991495 -191202169 - L2 LINE L2 0 3313 3200 226 358 20 65 chr1 90992505 90992706 -191200958 - MIR SINE MIR -35 227 36 2646 32 0 3 chr1 90993724 90994032 -191199632 - AluY SINE Alu -3 308 2 23 54 0 0 chr1 90994930 90994967 -191198697 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 90995041 90995070 -191198594 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr1 90995203 90995234 -191198430 + AT_rich Low_complexity Low_complexity 1 31 0 527 29 0 14 chr1 90995936 90996006 -191197658 + (TA)n Simple_repeat Simple_repeat 1 69 0 7664 88 7 5 chr1 90997356 90999211 -191194453 - L1PA7 LINE L1 0 6154 4292 35 41 0 0 chr1 90999941 90999990 -191193674 + AT_rich Low_complexity Low_complexity 1 49 0 1117 284 121 6 chr1 91000525 91001031 -191192633 + L2 LINE L2 2525 3092 -221 363 136 0 0 chr1 91001523 91001582 -191192082 + (TG)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr1 91001861 91001884 -191191780 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 91003156 91003178 -191190486 + AT_rich Low_complexity Low_complexity 1 22 0 2097 132 3 0 chr1 91003652 91003956 -191189708 + AluY SINE Alu 1 305 -6 21 0 0 0 chr1 91004534 91004555 -191189109 + AT_rich Low_complexity Low_complexity 1 21 0 1531 289 50 43 chr1 91005846 91005931 -191187733 - L1ME3A LINE L1 -38 6132 6049 1980 149 0 0 chr1 91005931 91006233 -191187431 + AluSx SINE Alu 11 312 0 1531 289 50 43 chr1 91006233 91006401 -191187263 - L1ME3A LINE L1 -121 6049 5884 616 259 101 53 chr1 91006401 91006756 -191186908 + MLT1A2 LTR MaLR 1 372 -2 1531 289 50 43 chr1 91006756 91007249 -191186415 - L1ME3A LINE L1 -286 5884 5380 303 272 87 24 chr1 91007325 91007531 -191186133 - L1ME3A LINE L1 -917 5229 5011 368 208 75 25 chr1 91007626 91007746 -191185918 - L1ME3A LINE L1 -3744 2402 2277 738 260 96 83 chr1 91007958 91008029 -191185635 + MLT1H1 LTR MaLR 52 121 -434 1732 154 3 58 chr1 91008029 91008359 -191185305 + AluJo SINE Alu 1 312 0 738 260 96 83 chr1 91008359 91008744 -191184920 + MLT1H1 LTR MaLR 121 514 -41 637 346 55 58 chr1 91008763 91009350 -191184314 + L2 LINE L2 2218 2802 -512 365 319 38 19 chr1 91009521 91009678 -191183986 - MIR SINE MIR -44 218 59 367 309 43 22 chr1 91010075 91010211 -191183453 + MLT1J LTR MaLR 51 169 -281 1054 226 41 41 chr1 91011066 91011228 -191182436 - Charlie5 DNA MER1_type 0 2624 2463 2009 100 4 4 chr1 91011228 91011509 -191182155 + AluSc SINE Alu 24 304 -5 1054 226 41 41 chr1 91011509 91011714 -191181950 - Charlie5 DNA MER1_type -160 2464 2257 517 258 0 0 chr1 91011715 91011835 -191181829 - Charlie5 DNA MER1_type -2488 124 5 2871 265 57 24 chr1 91012285 91013286 -191180378 + L1MEc LINE L1 37 1070 -5326 833 276 100 68 chr1 91013473 91014107 -191179557 + L1MEc LINE L1 1147 1971 -4425 389 188 16 0 chr1 91014114 91014178 -191179486 - MER2 DNA MER2_type -10 335 271 1250 114 59 25 chr1 91014207 91014409 -191179255 - MER2 DNA MER2_type -135 210 2 1038 233 47 19 chr1 91014417 91014739 -191178925 + L1MEc LINE L1 1974 2304 -4092 254 333 14 0 chr1 91014875 91014947 -191178717 - MIR SINE MIR -43 219 147 193 274 78 0 chr1 91015431 91015482 -191178182 + MER5C DNA MER1_type 1 55 -269 208 235 15 15 chr1 91015549 91015617 -191178047 + MER5C DNA MER1_type 220 287 -37 262 368 18 18 chr1 91015822 91015936 -191177728 + MIR SINE MIR 12 125 -137 1761 232 85 11 chr1 91016527 91016997 -191176667 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr1 91017655 91017677 -191175987 + AT_rich Low_complexity Low_complexity 1 22 0 237 193 18 18 chr1 91018202 91018259 -191175405 + L2 LINE L2 3256 3312 -1 686 312 68 36 chr1 91018461 91018846 -191174818 + MLT1I LTR MaLR 13 409 0 31 26 0 0 chr1 91018920 91018958 -191174706 + AT_rich Low_complexity Low_complexity 1 38 0 292 321 29 29 chr1 91019036 91019176 -191174488 - MIR SINE MIR -108 154 15 2036 233 38 23 chr1 91019972 91020547 -191173117 + L1MC4a LINE L1 5761 7801 -7 1744 215 32 38 chr1 91020741 91021211 -191172453 + MLT1C LTR MaLR 1 467 0 4620 138 61 19 chr1 91021339 91022073 -191171591 + L1PA16 LINE L1 4675 5377 -789 1790 192 32 60 chr1 91022073 91022510 -191171154 - MSTB LTR MaLR -1 425 1 4620 138 61 19 chr1 91022510 91023225 -191170439 + L1PA16 LINE L1 5377 6162 -4 252 0 0 0 chr1 91023636 91023664 -191170000 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1067 156 105 71 chr1 91024562 91024800 -191168864 - AluJo SINE Alu -28 284 39 460 321 43 27 chr1 91024832 91025019 -191168645 + MIR SINE MIR 65 254 -8 1040 249 78 19 chr1 91025571 91025892 -191167772 - MER58B DNA MER1_type -1 340 1 315 71 0 0 chr1 91026775 91026817 -191166847 + (CA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr1 91027463 91027485 -191166179 + AT_rich Low_complexity Low_complexity 1 22 0 1334 199 0 4 chr1 91028058 91028294 -191165370 + AluJb SINE Alu 57 293 -19 198 0 0 0 chr1 91028294 91028316 -191165348 + (CCA)n Simple_repeat Simple_repeat 1 22 0 605 130 22 0 chr1 91030436 91030528 -191163136 + Tigger4(Zombi) DNA MER2_type 1 94 -2637 * 2892 109 2 94 chr1 91030522 91031044 -191162620 + Tigger4(Zombi) DNA MER2_type 1870 2343 -388 24 0 0 0 chr1 91031049 91031073 -191162591 + AT_rich Low_complexity Low_complexity 1 24 0 328 162 0 54 chr1 91031073 91031147 -191162517 - Tigger4(Zombi) DNA MER2_type -527 2204 2135 * 332 125 97 0 chr1 91031145 91031217 -191162447 + Tigger4(Zombi) DNA MER2_type 2295 2373 -358 537 112 0 61 chr1 91031222 91031320 -191162344 - Tigger4(Zombi) DNA MER2_type -527 2204 2113 365 130 20 20 chr1 91031344 91031444 -191162220 + (TA)n Simple_repeat Simple_repeat 2 101 0 390 21 0 0 chr1 91031444 91031491 -191162173 + (GA)n Simple_repeat Simple_repeat 2 48 0 1133 102 18 18 chr1 91031493 91031659 -191162005 - AluSc SINE Alu -62 247 82 2419 161 0 0 chr1 91031659 91032056 -191161608 + Tigger4(Zombi) DNA MER2_type 2335 2731 0 2183 73 6 63 chr1 91032722 91033039 -191160625 + AluY SINE Alu 1 299 -12 1533 78 0 10 chr1 91033439 91033643 -191160021 + AluY SINE Alu 110 311 0 23 0 0 0 chr1 91033759 91033782 -191159882 + AT_rich Low_complexity Low_complexity 1 23 0 2600 52 0 0 chr1 91033945 91034251 -191159413 - AluY SINE Alu -5 306 1 189 94 0 0 chr1 91035086 91035118 -191158546 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 91035630 91035652 -191158012 + AT_rich Low_complexity Low_complexity 1 22 0 2128 128 16 0 chr1 91035955 91036260 -191157404 + AluSx SINE Alu 1 310 -2 2255 96 0 0 chr1 91036848 91037140 -191156524 + AluSg SINE Alu 1 292 -18 22 35 0 0 chr1 91037749 91037778 -191155886 + AT_rich Low_complexity Low_complexity 1 29 0 672 79 0 11 chr1 91039009 91039098 -191154566 - L1P LINE L1 -6029 117 30 12807 37 2 2 chr1 91039098 91041486 -191152178 + L1PA5 LINE L1 3775 6151 -3 276 30 0 0 chr1 91042178 91042211 -191151453 + (TG)n Simple_repeat Simple_repeat 2 34 0 219 191 32 96 chr1 91043484 91043578 -191150086 - L2 LINE L2 -188 3084 2997 217 125 25 0 chr1 91043831 91043871 -191149793 - MER91 DNA MER1_type 0 140 100 1758 178 0 7 chr1 91044366 91044659 -191149005 - AluSx SINE Alu -21 291 1 395 345 5 37 chr1 91045378 91045569 -191148095 - MLT1J LTR MaLR -35 476 292 2438 39 0 0 chr1 91045934 91046237 -191147427 + AluY SINE Alu 2 304 0 2259 115 0 0 chr1 91046536 91046848 -191146816 + AluSx SINE Alu 1 312 0 306 0 0 0 chr1 91046853 91046887 -191146777 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr1 91047699 91047720 -191145944 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr1 91048000 91048024 -191145640 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 378 83 42 0 chr1 91048069 91048141 -191145523 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 845 302 107 37 chr1 91048479 91048995 -191144669 - MLT1G1 LTR MaLR -9 586 35 361 231 86 77 chr1 91049748 91049969 -191143695 - L1MC5 LINE L1 -743 7218 6996 738 260 82 72 chr1 91050004 91050323 -191143341 + MLT1F1 LTR MaLR 63 384 -183 700 212 76 70 chr1 91050405 91050677 -191142987 - L1MC5 LINE L1 -1005 6803 6654 871 191 15 143 chr1 91050677 91050950 -191142714 - MER8 DNA MER2_type 0 239 2 700 212 76 70 chr1 91050950 91051131 -191142533 - L1MC5 LINE L1 -1154 6654 6476 187 241 138 0 chr1 91051767 91051825 -191141839 - MIR SINE MIR -13 249 184 2545 96 19 19 chr1 91051831 91052206 -191141458 - THE1C LTR MaLR 0 375 1 2203 191 28 72 chr1 91052227 91052573 -191141091 + MER82 DNA MER2_type 8 323 -330 7363 35 9 0 chr1 91052573 91053637 -191140027 - L1PA5 LINE L1 0 6154 5082 2203 191 28 72 chr1 91053637 91053833 -191139831 + MER82 DNA MER2_type 323 526 -127 284 278 9 111 chr1 91054256 91054364 -191139300 + MER5B DNA MER1_type 79 175 -3 6082 68 3 74 chr1 91054441 91055433 -191138231 - L1PA8A LINE L1 0 6131 5199 186 288 163 12 chr1 91055477 91055557 -191138107 + MIR SINE MIR 158 249 -13 185 358 98 23 chr1 91056529 91056702 -191136962 - L3 LINE CR1 -1056 521 336 579 298 83 29 chr1 91059147 91059389 -191134275 - MIR SINE MIR 0 262 10 588 152 0 21 chr1 91059627 91059772 -191133892 + G-rich Low_complexity Low_complexity 2 143 0 196 386 10 10 chr1 91059918 91060019 -191133645 + MER5A DNA MER1_type 61 161 -28 7088 125 9 10 chr1 91060196 91061586 -191132078 + L1MA2 LINE L1 4913 6299 -5 22 35 0 0 chr1 91061589 91061618 -191132046 + AT_rich Low_complexity Low_complexity 1 29 0 2080 111 0 0 chr1 91061618 91061897 -191131767 + AluSg SINE Alu 1 279 -31 414 0 0 0 chr1 91061901 91061947 -191131717 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 203 344 69 23 chr1 91062017 91062148 -191131516 + MIR SINE MIR 62 198 -64 210 37 0 0 chr1 91063538 91063565 -191130099 + (GA)n Simple_repeat Simple_repeat 1 27 0 25 65 0 0 chr1 91063604 91063650 -191130014 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr1 91066550 91066575 -191127089 + AT_rich Low_complexity Low_complexity 1 25 0 2250 96 3 0 chr1 91067571 91067864 -191125800 - AluSp SINE Alu -19 294 1 29 0 0 0 chr1 91069686 91069715 -191123949 + AT_rich Low_complexity Low_complexity 1 29 0 241 320 0 113 chr1 91069877 91070027 -191123637 - L2 LINE L2 -5 3308 3176 23 0 0 0 chr1 91070418 91070441 -191123223 + AT_rich Low_complexity Low_complexity 1 23 0 585 254 127 0 chr1 91070802 91070967 -191122697 + MER5A DNA MER1_type 1 186 -3 293 408 7 7 chr1 91071664 91071811 -191121853 - L2 LINE L2 -1 3271 3125 527 254 119 30 chr1 91071865 91072067 -191121597 + MIR SINE MIR 28 245 -17 318 50 0 0 chr1 91073498 91073538 -191120126 + (CA)n Simple_repeat Simple_repeat 2 41 0 320 274 94 17 chr1 91075462 91075579 -191118085 + L2 LINE L2 3143 3268 -4 24 53 0 0 chr1 91075634 91075672 -191117992 + AT_rich Low_complexity Low_complexity 1 38 0 436 342 71 0 chr1 91075676 91075860 -191117804 - MIR SINE MIR -1 261 65 666 284 140 34 chr1 91077319 91077640 -191116024 + L2 LINE L2 2549 2903 -411 204 237 0 0 chr1 91077644 91077682 -191115982 + T-rich Low_complexity Low_complexity 2 39 0 1524 120 89 41 chr1 91078024 91078176 -191115488 - AluSx SINE Alu -6 306 163 2026 133 0 3 chr1 91078176 91078476 -191115188 - AluSx SINE Alu -13 299 1 1524 120 89 41 chr1 91078476 91078615 -191115049 - AluSx SINE Alu -149 163 1 197 65 32 0 chr1 91079680 91079711 -191113953 + (CAT)n Simple_repeat Simple_repeat 2 33 0 223 345 96 18 chr1 91079886 91080106 -191113558 + L3 LINE CR1 806 1042 -535 582 86 0 0 chr1 91080155 91080236 -191113428 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 299 359 49 53 chr1 91080325 91080590 -191113074 + L3 LINE CR1 1311 1574 -3 396 312 61 111 chr1 91081419 91081762 -191111902 + L2 LINE L2 2946 3271 -1 2218 106 3 6 chr1 91083475 91083787 -191109877 - AluSx SINE Alu -1 311 1 24 32 0 0 chr1 91084205 91084236 -191109428 + AT_rich Low_complexity Low_complexity 1 31 0 184 354 0 37 chr1 91085312 91085394 -191108270 + MIR SINE MIR 16 94 -114 267 272 0 25 chr1 91085430 91085511 -191108153 + L2 LINE L2 3223 3301 -12 277 261 217 0 chr1 91085779 91085894 -191107770 + MIR SINE MIR 97 236 -26 920 127 0 0 chr1 91085897 91086031 -191107633 + MER41A LTR ERV1 1 134 -420 1041 73 0 7 chr1 91086031 91086168 -191107496 + AluYb8 SINE Alu 7 142 -176 3336 99 0 22 chr1 91086168 91086632 -191107032 + LTR10C LTR ERV1 138 591 0 1466 94 20 0 chr1 91086632 91086833 -191106831 + MER4E LTR ERV1 562 766 0 3298 258 88 25 chr1 91086896 91087921 -191105743 + L1MB7 LINE L1 28 1116 -5426 2492 255 26 25 chr1 91087934 91088836 -191104828 + L1MB7 LINE L1 1210 2109 -4537 4420 223 31 40 chr1 91088978 91089290 -191104374 + L1MB7 LINE L1 4447 4760 -1922 1852 125 44 7 chr1 91089290 91089587 -191104077 + AluSg SINE Alu 1 308 -2 4420 223 31 40 chr1 91089587 91091459 -191102205 + L1MB7 LINE L1 4760 6605 -77 350 364 44 53 chr1 91091782 91092142 -191101522 - L2 LINE L2 -480 2834 2478 370 305 10 35 chr1 91093221 91093421 -191100243 - L1ME LINE L1 -364 5757 5563 30 0 0 0 chr1 91093841 91093871 -191099793 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr1 91094028 91094067 -191099597 + AT_rich Low_complexity Low_complexity 1 39 0 640 323 39 32 chr1 91095478 91095816 -191097848 + LTR16C LTR ERVL 146 485 -6 22 0 0 0 chr1 91095935 91095957 -191097707 + AT_rich Low_complexity Low_complexity 1 22 0 2957 248 59 11 chr1 91096055 91097037 -191096627 - L1M4 LINE L1 -2907 3239 2211 902 260 121 23 chr1 91097789 91098185 -191095479 - MER110A LTR ERV1 0 468 34 328 323 8 77 chr1 91098245 91098547 -191095117 + MLT1J2 LTR MaLR 15 340 -106 2403 199 13 7 chr1 91098654 91099107 -191094557 + MSTB2 LTR MaLR 1 456 -1 180 0 0 0 chr1 91099260 91099280 -191094384 + (TTG)n Simple_repeat Simple_repeat 2 21 0 250 291 13 25 chr1 91099534 91099613 -191094051 + L2 LINE L2 3180 3257 -56 3872 148 17 31 chr1 91099614 91100323 -191093341 - LTR34 LTR ERV1 0 699 1 314 259 129 0 chr1 91100588 91100704 -191092960 - MER94 DNA DNA -3 131 1 627 348 52 11 chr1 91101787 91102074 -191091590 + MLT1H LTR MaLR 56 354 -195 298 60 20 20 chr1 91102209 91102259 -191091405 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr1 91102606 91102627 -191091037 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 91103436 91103457 -191090207 + AT_rich Low_complexity Low_complexity 1 21 0 270 299 280 0 chr1 91106124 91106281 -191087383 - MIR SINE MIR 0 262 62 299 265 44 0 chr1 91106686 91106754 -191086910 - L2 LINE L2 -66 3206 3136 331 322 44 44 chr1 91106906 91107089 -191086575 + MIR SINE MIR 2 184 -78 235 301 27 0 chr1 91107217 91107290 -191086374 - L2 LINE L2 -9 3304 3230 228 35 0 0 chr1 91107452 91107481 -191086183 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 723 310 94 24 chr1 91109193 91109522 -191084142 - L2 LINE L2 0 3313 2962 213 333 74 45 chr1 91109592 91109835 -191083829 + L2 LINE L2 2657 2906 -408 446 296 80 53 chr1 91110650 91110788 -191082876 + MIR SINE MIR 31 179 -83 1756 181 33 19 chr1 91110788 91111148 -191082516 - MLT1A1 LTR MaLR 0 365 1 446 296 80 53 chr1 91111148 91111235 -191082429 + MIR SINE MIR 179 262 0 235 307 40 0 chr1 91111449 91111524 -191082140 + MIR SINE MIR 181 258 -4 1507 226 85 59 chr1 91111524 91112016 -191081648 + MLT1D LTR MaLR 1 505 0 27 62 0 0 chr1 91112106 91112154 -191081510 + AT_rich Low_complexity Low_complexity 1 48 0 220 268 0 18 chr1 91112639 91112695 -191080969 + CT-rich Low_complexity Low_complexity 1 55 0 1508 142 22 0 chr1 91113109 91113341 -191080323 - MLT2A2 LTR ERVL -216 237 1 11639 101 8 6 chr1 91113341 91114944 -191078720 - HERVL-A2 LTR ERVL 0 5654 4050 572 89 0 0 chr1 91114944 91115023 -191078641 - MLT2A2 LTR ERVL -374 79 1 188 32 97 0 chr1 91115674 91115705 -191077959 + T-rich Low_complexity Low_complexity 2 35 0 34 72 0 0 chr1 91115939 91116008 -191077656 + AT_rich Low_complexity Low_complexity 1 69 0 368 295 116 8 chr1 91116250 91116379 -191077285 + MIR SINE MIR 34 176 -86 23 0 0 0 chr1 91116387 91116410 -191077254 + AT_rich Low_complexity Low_complexity 1 23 0 201 328 0 0 chr1 91116421 91116482 -191077182 - MIR SINE MIR 0 262 202 213 203 27 14 chr1 91116592 91116666 -191076998 + (TA)n Simple_repeat Simple_repeat 1 75 0 191 36 36 0 chr1 91116683 91116711 -191076953 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 1132 193 20 0 chr1 91117287 91117489 -191076175 + MER2 DNA MER2_type 1 206 -139 902 196 79 112 chr1 91117582 91117974 -191075690 + MER57A LTR ERV1 25 403 0 384 309 96 4 chr1 91120384 91120614 -191073050 + MIR SINE MIR 8 258 -4 467 295 76 32 chr1 91120622 91120873 -191072791 + MIR SINE MIR 1 262 0 2357 84 7 3 chr1 91121040 91121349 -191072315 - AluY SINE Alu -1 310 1 5036 95 34 102 chr1 91122138 91123024 -191070640 + LTR12 LTR ERV1 1 826 0 320 268 42 71 chr1 91123704 91123943 -191069721 + L1MEd LINE L1 984 1215 -4904 2067 116 17 40 chr1 91123954 91124307 -191069357 + L1MA1 LINE L1 5954 6298 -4 23 0 0 0 chr1 91124311 91124334 -191069330 + AT_rich Low_complexity Low_complexity 1 23 0 1662 140 104 4 chr1 91125216 91125495 -191068169 - AluSx SINE Alu -5 307 1 1366 265 83 43 chr1 91125629 91126228 -191067436 - MLT1E2 LTR MaLR 0 626 4 564 252 213 116 chr1 91126231 91126819 -191066845 - MLT1E2-int LTR MaLR 0 1371 727 1987 139 3 3 chr1 91127056 91127351 -191066313 + AluSq SINE Alu 1 295 -18 200 135 0 19 chr1 91129647 91129699 -191063965 + (TAA)n Simple_repeat Simple_repeat 3 53 0 401 286 95 14 chr1 91129706 91129853 -191063811 - MLT1I LTR MaLR -27 382 224 952 271 94 26 chr1 91129902 91130763 -191062901 - L1ME LINE L1 -468 5702 4787 6154 55 13 14 chr1 91130820 91131601 -191062063 - LTR17 LTR ERV1 0 780 1 429 147 0 0 chr1 91131628 91131696 -191061968 - MLT1D LTR MaLR 0 505 438 663 350 46 24 chr1 91131698 91132109 -191061555 + L1M3c LINE L1 1 420 -5721 296 148 19 0 chr1 91132229 91132283 -191061381 + L1MB1 LINE L1 3802 3856 -2290 5724 147 45 37 chr1 91132291 91133340 -191060324 + L1PB1 LINE L1 2 1058 -5805 13913 192 19 16 chr1 91133345 91135831 -191057833 + L1PB1 LINE L1 1627 4104 -2763 1870 162 13 0 chr1 91135831 91136134 -191057530 + AluSx SINE Alu 6 312 0 13913 192 19 16 chr1 91136134 91138367 -191055297 + L1PB1 LINE L1 4104 6329 -538 590 88 0 0 chr1 91138367 91138447 -191055217 + MADE1 DNA Mariner 1 80 0 13913 192 19 16 chr1 91138447 91138548 -191055116 + L1PB1 LINE L1 6329 6428 -439 360 0 0 0 chr1 91138548 91138588 -191055076 + (CA)n Simple_repeat Simple_repeat 2 41 0 13913 192 19 16 chr1 91138588 91138923 -191054741 + L1PB1 LINE L1 6428 6867 0 4329 219 72 20 chr1 91138954 91140367 -191053297 + L1MB1 LINE L1 3830 5169 -999 2145 107 0 21 chr1 91140367 91140686 -191052978 + AluSq SINE Alu 1 313 0 4329 219 72 20 chr1 91140686 91140720 -191052944 + L1MB1 LINE L1 5169 5200 -968 2332 184 21 5 chr1 91140720 91141138 -191052526 - MSTB LTR MaLR -1 425 1 4329 219 72 20 chr1 91141138 91141886 -191051778 + L1MB1 LINE L1 5200 6146 -22 2363 211 103 23 chr1 91141891 91142368 -191051296 + MLT2B3 LTR ERVL 1 523 -31 410 101 14 0 chr1 91142368 91142437 -191051227 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 2363 211 103 23 chr1 91142437 91142472 -191051192 + MLT2B3 LTR ERVL 523 554 0 1548 243 119 10 chr1 91142500 91142904 -191050760 - MLT1D LTR MaLR -57 448 1 860 234 50 108 chr1 91142952 91143047 -191050617 - MLT1D-int LTR MaLR -46 1325 1226 3584 125 27 33 chr1 91143047 91143686 -191049978 - LTR24C LTR ERV1 0 635 1 860 234 50 108 chr1 91143686 91143970 -191049694 - MLT1D-int LTR MaLR -145 1226 968 306 243 87 0 chr1 91144011 91144114 -191049550 - L1 LINE L1 -1625 4521 4410 21 71 0 0 chr1 91144122 91144164 -191049500 + AT_rich Low_complexity Low_complexity 1 42 0 1130 295 79 49 chr1 91144211 91144281 -191049383 - L1 LINE L1 -1848 4298 4232 955 246 68 73 chr1 91144281 91144679 -191048985 + MSTD LTR MaLR 1 396 0 6360 251 58 16 chr1 91144681 91146345 -191047319 + MSTD-int LTR MaLR 2 1735 0 1245 260 22 42 chr1 91146345 91146749 -191046915 + MSTD LTR MaLR 1 396 0 1130 295 79 49 chr1 91146749 91147240 -191046424 - L1 LINE L1 -1914 4232 3757 2430 75 7 0 chr1 91147240 91147548 -191046116 - AluY SINE Alu -1 310 1 1130 295 79 49 chr1 91147548 91148102 -191045562 - L1 LINE L1 -2389 3757 3144 6653 62 37 0 chr1 91148418 91149604 -191044060 - L1PA8 LINE L1 -11 6161 4960 2460 153 34 10 chr1 91150166 91150584 -191043080 - MSTA LTR MaLR 0 428 1 2028 125 26 3 chr1 91150863 91151166 -191042498 + AluSx SINE Alu 1 310 -2 721 127 15 8 chr1 91151169 91151303 -191042361 + GA-rich Low_complexity Low_complexity 2 136 0 574 361 40 32 chr1 91151326 91151672 -191041992 - L2 LINE L2 -879 2435 2087 4995 257 23 37 chr1 91152396 91154876 -191038788 - L1PB4 LINE L1 -2546 4303 1878 7382 195 30 9 chr1 91154876 91157372 -191036292 + L1PB4 LINE L1 4312 6856 -3 181 276 66 99 chr1 91159728 91159880 -191033784 + MER5A DNA MER1_type 43 189 0 22 35 0 0 chr1 91160146 91160175 -191033489 + AT_rich Low_complexity Low_complexity 1 29 0 1972 147 51 25 chr1 91160447 91160802 -191032862 - THE1B LTR MaLR 0 364 1 231 36 0 0 chr1 91162095 91162123 -191031541 + (T)n Simple_repeat Simple_repeat 1 28 0 359 177 50 71 chr1 91162125 91162266 -191031398 + L1MB7 LINE L1 6031 6168 -16 475 0 0 0 chr1 91162699 91162760 -191030904 - L1PA2 LINE L1 0 6155 6095 706 179 8 0 chr1 91163875 91163992 -191029672 - FLAM_C SINE Alu -15 118 1 7403 191 30 12 chr1 91164174 91166784 -191026880 - L1PA16 LINE L1 -3 6163 3512 402 298 79 72 chr1 91166926 91167488 -191026176 + L1ME LINE L1 5264 5824 -297 1342 284 47 19 chr1 91167522 91167945 -191025719 - LTR40a LTR ERVL -8 511 77 1788 172 21 58 chr1 91168320 91168806 -191024858 - MER39 LTR ERV1 -193 514 104 320 151 315 0 chr1 91168802 91168875 -191024789 - MER21A LTR ERV1 -766 165 70 * 369 127 0 0 chr1 91168983 91169038 -191024626 - MER21A LTR ERV1 -860 71 17 2030 231 52 9 chr1 91169489 91169934 -191023730 + MLT1D LTR MaLR 1 464 -41 506 343 45 11 chr1 91170333 91170598 -191023066 - MLT1L LTR MaLR 0 615 342 4023 121 70 36 chr1 91170943 91171701 -191021963 + LTR1 LTR ERV1 2 785 0 339 25 0 0 chr1 91171739 91171779 -191021885 + (TG)n Simple_repeat Simple_repeat 1 40 0 808 129 109 7 chr1 91172011 91172158 -191021506 + MER61A LTR ERV1 1 162 -181 903 136 0 39 chr1 91172421 91172576 -191021088 + MER61A LTR ERV1 195 343 0 2481 177 39 26 chr1 91172576 91173194 -191020470 + MER61A-int LTR ERV1 1 707 -4510 24326 99 58 19 chr1 91173224 91176977 -191016687 + MER61A-int LTR ERV1 1320 5217 0 1532 166 60 27 chr1 91176977 91177309 -191016355 + MER61A LTR ERV1 1 343 0 1893 122 15 0 chr1 91177552 91177842 -191015822 - AluSg SINE Alu 0 309 16 934 164 0 22 chr1 91178612 91178795 -191014869 + L1MB1 LINE L1 5990 6168 0 340 302 17 43 chr1 91179315 91179431 -191014233 - L3 LINE CR1 -6 1571 1459 25 31 0 0 chr1 91180419 91180451 -191013213 + AT_rich Low_complexity Low_complexity 1 32 0 378 0 0 0 chr1 91180496 91180538 -191013126 + (TG)n Simple_repeat Simple_repeat 2 43 0 298 237 92 69 chr1 91180922 91181053 -191012611 + MIR SINE MIR 59 192 -70 1688 174 7 10 chr1 91182792 91183091 -191010573 - AluJb SINE Alu -4 308 11 21 36 0 0 chr1 91183844 91183872 -191009792 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr1 91186210 91186253 -191007411 + AT_rich Low_complexity Low_complexity 1 43 0 2632 104 0 0 chr1 91187617 91187972 -191005692 + THE1A LTR MaLR 1 355 0 430 195 0 0 chr1 91189775 91189857 -191003807 - L1M4 LINE L1 -3218 2928 2847 * 1677 205 29 142 chr1 91189855 91190506 -191003158 + L1MDa LINE L1 33 598 -5942 2626 20 0 0 chr1 91192252 91192547 -191001117 - AluYa5 SINE Alu -14 297 3 2101 73 31 3 chr1 91192573 91192859 -191000805 - AluY SINE Alu -17 294 1 2623 102 3 3 chr1 91192983 91193347 -191000317 - THE1B LTR MaLR 0 364 1 254 232 61 12 chr1 91194227 91194309 -190999355 + Charlie8 DNA MER1_type 71 156 -2261 302 298 145 15 chr1 91194654 91194785 -190998879 - MIR SINE MIR -114 148 1 23 33 0 0 chr1 91197146 91197176 -190996488 + AT_rich Low_complexity Low_complexity 1 30 0 256 317 244 11 chr1 91197470 91197650 -190996014 + MIR SINE MIR 14 235 -27 496 261 26 0 chr1 91198089 91198204 -190995460 + MLT1J LTR MaLR 3 120 -391 1869 345 38 28 chr1 91198205 91199365 -190994299 + ERVL LTR ERVL 4252 5423 -341 414 317 28 0 chr1 91202245 91202387 -190991277 - MIR3 SINE MIR -3 205 60 1697 284 100 4 chr1 91202648 91203176 -190990488 + MER119 DNA MER1_type 1 579 -4 337 257 96 44 chr1 91203414 91203550 -190990114 + MIR SINE MIR 118 260 -2 347 279 58 43 chr1 91205116 91205324 -190988340 + L1ME LINE L1 5518 5728 -393 218 277 133 0 chr1 91205377 91205460 -190988204 - MIR SINE MIR -15 247 154 1173 238 37 52 chr1 91205460 91205502 -190988162 - MLT2D LTR ERVL 0 414 373 282 116 0 0 chr1 91205502 91205545 -190988119 + (CA)n Simple_repeat Simple_repeat 2 44 0 1173 238 37 52 chr1 91205545 91205830 -190987834 - MLT2D LTR ERVL -41 373 92 250 378 30 15 chr1 91205870 91206005 -190987659 - MIR SINE MIR -108 154 18 21 0 0 0 chr1 91206063 91206084 -190987580 + AT_rich Low_complexity Low_complexity 1 21 0 2397 48 0 0 chr1 91211010 91211304 -190982360 - AluY SINE Alu -17 294 1 257 200 33 0 chr1 91212363 91212423 -190981241 + T-rich Low_complexity Low_complexity 4 65 0 217 339 131 8 chr1 91212641 91212771 -190980893 - L2 LINE L2 0 3272 3127 1261 297 119 33 chr1 91216711 91217844 -190975820 + L2 LINE L2 2078 3313 0 697 234 44 29 chr1 91219106 91219311 -190974353 + MER3 DNA MER1_type 2 209 0 1525 210 30 78 chr1 91221030 91221426 -190972238 + MLT1B LTR MaLR 1 377 -13 283 335 165 14 chr1 91221595 91221813 -190971851 - MIR SINE MIR 0 262 12 329 244 0 32 chr1 91222432 91222548 -190971116 + MLT1J LTR MaLR 68 174 -200 1579 127 200 43 chr1 91223986 91224356 -190969308 - MSTA LTR MaLR 0 428 1 9556 128 16 42 chr1 91224362 91225453 -190968211 - MSTA-int LTR MaLR -7 1573 536 225 0 0 0 chr1 91225453 91225478 -190968186 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9556 128 16 42 chr1 91225478 91225999 -190967665 - MSTA-int LTR MaLR -1044 536 3 1560 197 55 17 chr1 91226001 91226362 -190967302 - THE1C LTR MaLR 0 375 1 261 283 9 57 chr1 91226684 91226790 -190966874 - MIR SINE MIR -3 259 159 1639 230 139 7 chr1 91226790 91227357 -190966307 - MLT1E2 LTR MaLR 0 626 1 292 161 34 0 chr1 91227357 91227415 -190966249 - MIR SINE MIR -99 163 104 273 159 0 0 chr1 91228519 91228582 -190965082 + T-rich Low_complexity Low_complexity 1 63 0 885 146 0 0 chr1 91228796 91228919 -190964745 - FLAM_C SINE Alu -10 123 1 27 29 0 0 chr1 91230250 91230284 -190963380 + AT_rich Low_complexity Low_complexity 1 34 0 1462 241 110 54 chr1 91232243 91232744 -190960920 + MLT1F1 LTR MaLR 14 567 0 794 312 31 35 chr1 91232745 91233174 -190960490 + MLT1F1-int LTR MaLR 2 554 -817 2200 93 13 3 chr1 91233174 91233474 -190960190 + AluY SINE Alu 1 303 -8 794 312 31 35 chr1 91233474 91233527 -190960137 + MLT1F1-int LTR MaLR 554 606 -765 4209 74 19 26 chr1 91233751 91234372 -190959292 - L1PA8 LINE L1 -6 6166 5550 499 277 78 128 chr1 91234385 91235075 -190958589 + MLT1F1-int LTR MaLR 692 1347 -24 1505 279 79 28 chr1 91235105 91235635 -190958029 + MLT1F1 LTR MaLR 8 567 0 652 384 61 26 chr1 91235635 91236177 -190957487 - L2 LINE L2 -268 3045 2482 21 71 0 0 chr1 91237910 91237952 -190955712 + AT_rich Low_complexity Low_complexity 1 42 0 233 223 50 14 chr1 91238573 91238712 -190954952 + (TA)n Simple_repeat Simple_repeat 2 145 0 294 184 59 15 chr1 91238777 91238913 -190954751 + (TA)n Simple_repeat Simple_repeat 1 142 0 214 214 28 51 chr1 91238958 91239136 -190954528 + (TTATA)n Simple_repeat Simple_repeat 5 178 0 * 230 218 65 35 chr1 91239042 91239212 -190954452 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 36 77 0 0 chr1 91239888 91239966 -190953698 + AT_rich Low_complexity Low_complexity 1 78 0 219 213 0 0 chr1 91240171 91240251 -190953413 + (CTA)n Simple_repeat Simple_repeat 3 82 0 296 302 9 17 chr1 91240313 91240429 -190953235 - MER103 DNA DNA -2 164 50 11920 28 0 1 chr1 91240430 91242631 -190951033 + L1PA3 LINE L1 3944 6155 0 24 53 0 0 chr1 91242714 91242752 -190950912 + AT_rich Low_complexity Low_complexity 1 38 0 187 308 0 0 chr1 91243349 91243401 -190950263 - MIR SINE MIR 0 262 211 23 0 0 0 chr1 91243536 91243559 -190950105 + AT_rich Low_complexity Low_complexity 1 23 0 184 383 28 21 chr1 91244313 91244454 -190949210 + MIR SINE MIR 46 187 -75 1258 232 40 63 chr1 91245213 91245610 -190948054 - MLT1B LTR MaLR -2 388 1 3619 271 88 30 chr1 91245922 91246933 -190946731 + L1ME1 LINE L1 35 986 -5410 1629 193 94 8 chr1 91246933 91247295 -190946369 + MSTD LTR MaLR 1 393 -3 3619 271 88 30 chr1 91247295 91247559 -190946105 + L1ME1 LINE L1 986 1233 -5163 399 56 0 0 chr1 91247559 91247613 -190946051 + (CA)n Simple_repeat Simple_repeat 2 55 0 3619 271 88 30 chr1 91247613 91247981 -190945683 + L1ME1 LINE L1 1233 1775 -4621 5967 242 77 32 chr1 91247983 91249625 -190944039 + L1ME1 LINE L1 2952 4519 -1716 204 67 0 0 chr1 91249625 91249655 -190944009 + (TTG)n Simple_repeat Simple_repeat 2 31 0 5967 242 77 32 chr1 91249655 91251113 -190942551 + L1ME1 LINE L1 4519 6186 -49 334 241 26 26 chr1 91251049 91251165 -190942499 + L1MA10 LINE L1 6280 6395 -8 * 22 0 0 0 chr1 91253413 91253435 -190940229 + AT_rich Low_complexity Low_complexity 1 22 0 1018 248 68 66 chr1 91253502 91253897 -190939767 - MLT1E2 LTR MaLR -146 480 85 204 233 0 0 chr1 91253906 91253949 -190939715 + (TATG)n Simple_repeat Simple_repeat 1 43 0 564 257 139 21 chr1 91255925 91256112 -190937552 + HsTC2 DNA Tc2 1282 1666 -232 2084 125 0 6 chr1 91256180 91256491 -190937173 - AluSc SINE Alu 0 309 1 5890 130 30 3 chr1 91256535 91257473 -190936191 - L1MA5A LINE L1 -4 6935 5969 2088 122 0 28 chr1 91257473 91257794 -190935870 - AluSx SINE Alu 0 312 1 5890 130 30 3 chr1 91257794 91257826 -190935838 - L1MA5A LINE L1 -970 5969 5939 189 74 0 0 chr1 91257830 91257857 -190935807 + (TTTCC)n Simple_repeat Simple_repeat 4 30 0 * 260 172 17 0 chr1 91257852 91257910 -190935754 + CT-rich Low_complexity Low_complexity 2 60 0 10494 197 46 4 chr1 91257910 91260317 -190933347 - L1MA5A LINE L1 -841 5947 3440 7179 206 51 72 chr1 91260332 91262307 -190931357 - L1MA5A LINE L1 -4620 2169 1 24 47 0 47 chr1 91262372 91262436 -190931228 + AT_rich Low_complexity Low_complexity 1 61 0 296 387 103 26 chr1 91263126 91263467 -190930197 - L2 LINE L2 -9 3263 2897 376 344 67 37 chr1 91263965 91264395 -190929269 - ERVL LTR ERVL -389 5375 4933 1611 178 48 40 chr1 91264463 91264660 -190929004 - MLT1B LTR MaLR 0 390 187 333 0 0 0 chr1 91264660 91264697 -190928967 + (TG)n Simple_repeat Simple_repeat 1 37 0 1611 178 48 40 chr1 91264697 91264876 -190928788 - MLT1B LTR MaLR -203 187 11 452 305 90 15 chr1 91264904 91265104 -190928560 - ERVL LTR ERVL -937 4827 4613 * 869 292 75 68 chr1 91265096 91265419 -190928245 - ERVL LTR ERVL -1324 4440 4110 2770 13 0 0 chr1 91265419 91265730 -190927934 + AluYa5 SINE Alu 1 311 0 869 292 75 68 chr1 91265730 91265923 -190927741 - ERVL LTR ERVL -1654 4110 3920 1706 175 31 21 chr1 91265928 91266195 -190927469 - MLT1A1 LTR MaLR 0 365 93 932 192 154 90 chr1 91266195 91266538 -190927126 - MLT1A1 LTR MaLR 0 365 1 1706 175 31 21 chr1 91266538 91266595 -190927069 - MLT1A1 LTR MaLR -272 93 38 189 147 0 0 chr1 91266626 91266660 -190927004 + (TTCCC)n Simple_repeat Simple_repeat 4 37 0 707 342 61 35 chr1 91266815 91267602 -190926062 - ERVL LTR ERVL -2098 3387 2580 3097 194 20 20 chr1 91267615 91268227 -190925437 + L1MA3 LINE L1 20 631 -6934 * 9135 159 35 26 chr1 91268224 91269572 -190924092 + L1MA3 LINE L1 1481 2848 -4717 21806 29 0 0 chr1 91269572 91272988 -190920676 + L1PA3 LINE L1 2735 6152 -3 9135 159 35 26 chr1 91272988 91273373 -190920291 + L1MA3 LINE L1 2848 3228 -4337 1384 223 18 68 chr1 91273366 91273766 -190919898 - L1 LINE L1 -3366 2780 2401 * 1664 197 0 0 chr1 91273768 91274052 -190919612 - AluJb SINE Alu -28 284 1 221 226 48 48 chr1 91274052 91274114 -190919550 - L2 LINE L2 -960 2354 2293 513 202 0 0 chr1 91274130 91274234 -190919430 - L1 LINE L1 -3748 2398 2295 * 9950 164 58 40 chr1 91274228 91276299 -190917365 + L1MA3 LINE L1 4188 6357 -1367 2670 102 6 0 chr1 91276299 91276661 -190917003 - THE1B LTR MaLR 0 364 1 9950 164 58 40 chr1 91276661 91278054 -190915610 + L1MA3 LINE L1 6357 7723 -1 787 338 44 25 chr1 91278173 91278490 -190915174 - ERVL LTR ERVL -3242 2412 2090 416 377 69 20 chr1 91278552 91279000 -190914664 - ERVL LTR ERVL -3740 2024 1555 2185 69 11 0 chr1 91279962 91280295 -190913369 + AluY SINE Alu 2 337 0 936 285 147 11 chr1 91280626 91280973 -190912691 - LTR33 LTR ERVL -1 520 127 1730 286 130 7 chr1 91280989 91281720 -190911944 + L2 LINE L2 1282 2102 -1212 523 265 59 34 chr1 91282053 91282257 -190911407 - MER63A DNA MER1_type -1 209 1 280 339 81 0 chr1 91282313 91282437 -190911227 + L2 LINE L2 3180 3313 0 1915 266 69 57 chr1 91283093 91285236 -190908428 + L1ME3A LINE L1 4009 6170 0 331 221 230 9 chr1 91285808 91285921 -190907743 + Tigger5 DNA MER2_type 1 138 -2185 * 1175 197 0 0 chr1 91285918 91286131 -190907533 + Tigger5 DNA MER2_type 2104 2316 -7 476 239 28 35 chr1 91286569 91286711 -190906953 + L1ME1 LINE L1 309 449 -5974 1649 292 62 41 chr1 91286976 91288615 -190905049 + L1ME1 LINE L1 820 2705 -4417 1022 157 5 26 chr1 91288614 91288805 -190904859 + L1MA4 LINE L1 5341 5527 -777 * 774 180 0 7 chr1 91288800 91288939 -190904725 + L1MA4 LINE L1 5883 6020 -280 * 375 189 33 0 chr1 91288946 91289036 -190904628 + L1MB3 LINE L1 6090 6182 -1 27 62 0 0 chr1 91289051 91289099 -190904565 + AT_rich Low_complexity Low_complexity 1 48 0 1481 171 25 29 chr1 91289103 91289384 -190904280 + AluJo SINE Alu 3 282 -30 183 80 0 0 chr1 91289389 91289414 -190904250 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 5797 159 89 13 chr1 91289462 91289509 -190904155 - Tigger3b DNA MER2_type -1797 1231 1189 2580 113 0 0 chr1 91289509 91289873 -190903791 - THE1B LTR MaLR 0 364 1 5797 159 89 13 chr1 91289873 91290704 -190902960 - Tigger3b DNA MER2_type -1839 1189 243 576 0 0 0 chr1 91290704 91290768 -190902896 + (TATAG)n Simple_repeat Simple_repeat 4 67 0 5797 159 89 13 chr1 91290768 91291032 -190902632 - Tigger3b DNA MER2_type -2785 243 1 5065 251 71 38 chr1 91291075 91292330 -190901334 + L1ME1 LINE L1 3869 5081 -1880 2424 168 22 11 chr1 91292330 91292783 -190900881 - L1PB4 LINE L1 -1 6155 5698 5065 251 71 38 chr1 91292783 91294521 -190899143 + L1ME1 LINE L1 5081 6953 -8 21 0 0 0 chr1 91295303 91295324 -190898340 + AT_rich Low_complexity Low_complexity 1 21 0 489 266 22 14 chr1 91296363 91296502 -190897162 + MIR SINE MIR 13 152 -110 1379 191 84 88 chr1 91296641 91297105 -190896559 + MER31B LTR ERV1 1 538 -5 213 39 0 0 chr1 91298362 91298388 -190895276 + (CA)n Simple_repeat Simple_repeat 1 26 0 188 190 51 0 chr1 91299298 91299377 -190894287 + (TA)n Simple_repeat Simple_repeat 1 83 0 189 0 0 0 chr1 91299665 91299686 -190893978 + (CAG)n Simple_repeat Simple_repeat 1 21 0 751 341 68 45 chr1 91300552 91301511 -190892153 + L2 LINE L2 2291 3272 0 29 0 0 0 chr1 91301649 91301678 -190891986 + AT_rich Low_complexity Low_complexity 1 29 0 191 284 27 122 chr1 91302972 91303120 -190890544 + MER5A DNA MER1_type 56 189 0 273 312 64 21 chr1 91303497 91303638 -190890026 + L2 LINE L2 3165 3311 -2 248 338 113 29 chr1 91303976 91304180 -190889484 + MLT1I LTR MaLR 82 302 -107 461 246 49 0 chr1 91304924 91305046 -190888618 - MER94 DNA DNA -1 133 6 267 361 144 15 chr1 91305631 91305833 -190887831 + MIR SINE MIR 22 249 -13 375 78 0 0 chr1 91308261 91308312 -190885352 + (CA)n Simple_repeat Simple_repeat 2 52 0 488 315 194 5 chr1 91309289 91309505 -190884159 + MIR SINE MIR 2 258 -4 216 327 40 50 chr1 91309606 91309707 -190883957 + MER91A DNA MER1_type 52 151 -45 211 228 140 35 chr1 91309719 91309776 -190883888 + MER91A DNA MER1_type 115 177 -19 1573 247 19 32 chr1 91310190 91310656 -190883008 - LTR40b LTR ERVL 0 462 3 24 0 0 0 chr1 91311064 91311088 -190882576 + AT_rich Low_complexity Low_complexity 1 24 0 261 0 0 0 chr1 91311386 91311415 -190882249 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 302 294 43 55 chr1 91312018 91312181 -190881483 - MER63A DNA MER1_type -9 201 41 710 269 27 30 chr1 91312609 91312906 -190880758 - L1ME LINE L1 -350 5771 5476 255 250 47 61 chr1 91313354 91313502 -190880162 - L1ME LINE L1 -2348 5460 5315 285 351 66 0 chr1 91313964 91314115 -190879549 - L3 LINE CR1 -622 955 795 378 163 124 144 chr1 91314245 91314398 -190879266 + MER5C DNA MER1_type 11 160 -164 222 300 0 0 chr1 91314476 91314536 -190879128 - L3 LINE CR1 -870 707 648 11009 257 34 27 chr1 91314547 91320300 -190873364 + L1PA15 LINE L1 2 5781 -1803 29827 112 19 23 chr1 91320315 91326415 -190867249 + L1PA7 LINE L1 326 6468 -1 3782 190 10 11 chr1 91326406 91327217 -190866447 + L1PA15 LINE L1 5836 6645 -939 * 4090 143 35 1 chr1 91327217 91327910 -190865754 + L1PA15 LINE L1 6883 7599 -4 195 318 168 34 chr1 91327935 91328114 -190865550 - L3 LINE CR1 -966 611 409 221 325 57 32 chr1 91329956 91330079 -190863585 + L2 LINE L2 2932 3057 -215 21 0 0 0 chr1 91330840 91330861 -190862803 + AT_rich Low_complexity Low_complexity 1 21 0 293 333 67 46 chr1 91330868 91331150 -190862514 - L2 LINE L2 -866 2448 2161 1899 142 0 7 chr1 91331183 91331464 -190862200 + AluSx SINE Alu 1 279 -33 341 24 0 0 chr1 91331464 91331505 -190862159 + L1PA6 LINE L1 6105 6145 -9 189 0 0 0 chr1 91332661 91332682 -190860982 + (T)n Simple_repeat Simple_repeat 1 21 0 694 221 104 25 chr1 91332918 91333158 -190860506 - L1MCc LINE L1 -4954 1469 1211 1466 168 81 37 chr1 91333195 91333516 -190860148 - MER44D DNA MER2_type -1 608 4 897 290 42 23 chr1 91333520 91333830 -190859834 - L1MCc LINE L1 -5293 1130 815 2208 223 42 24 chr1 91333831 91334220 -190859444 - MLT2B2 LTR ERVL -7 508 107 886 198 61 134 chr1 91334220 91334614 -190859050 - MLT1A1 LTR MaLR 0 365 1 2208 223 42 24 chr1 91334614 91334721 -190858943 - MLT2B2 LTR ERVL -408 107 3 377 284 6 82 chr1 91334729 91334912 -190858752 - L1MCc LINE L1 -5607 816 648 627 78 0 0 chr1 91335112 91335202 -190858462 - AluY SINE Alu -4 307 218 1169 291 52 9 chr1 91335202 91335621 -190858043 - L1MCc LINE L1 -5968 455 19 23 0 0 0 chr1 91335787 91335810 -190857854 + AT_rich Low_complexity Low_complexity 1 23 0 4204 163 7 8 chr1 91336100 91336811 -190856853 - MER50 LTR ERV1 -24 710 1 438 225 72 7 chr1 91337552 91337690 -190855974 - MLT1J2 LTR MaLR -282 168 22 402 260 33 20 chr1 91338080 91338230 -190855434 - L1ME LINE L1 -451 5670 5519 28 0 0 0 chr1 91340518 91340546 -190853118 + AT_rich Low_complexity Low_complexity 1 28 0 352 299 42 60 chr1 91341030 91341197 -190852467 - L1MC4 LINE L1 -1339 6703 6540 32 0 0 0 chr1 91341238 91341270 -190852394 + AT_rich Low_complexity Low_complexity 1 32 0 313 200 53 0 chr1 91341365 91341440 -190852224 + MADE1 DNA Mariner 1 79 -1 2104 123 0 0 chr1 91341838 91342130 -190851534 + AluSg SINE Alu 3 294 -16 26 30 0 0 chr1 91342240 91342273 -190851391 + AT_rich Low_complexity Low_complexity 1 33 0 2268 237 44 22 chr1 91342408 91342994 -190850670 + MER90 LTR ERV1 1 599 -15 254 247 43 32 chr1 91343223 91343316 -190850348 - MIR SINE MIR -9 253 160 1133 275 117 19 chr1 91343488 91344199 -190849465 - L2 LINE L2 -1 3312 2520 194 264 163 70 chr1 91344184 91344313 -190849351 - MIR SINE MIR -121 141 1 * 1375 325 123 35 chr1 91345552 91346680 -190846984 + L2 LINE L2 1747 2973 -341 27 49 0 0 chr1 91347774 91347815 -190845849 + AT_rich Low_complexity Low_complexity 1 41 0 2438 58 0 0 chr1 91347986 91348278 -190845386 + AluY SINE Alu 1 292 -19 639 236 48 30 chr1 91348474 91348639 -190845025 - MIR SINE MIR -21 241 74 474 33 0 0 chr1 91348777 91348837 -190844827 + (CA)n Simple_repeat Simple_repeat 2 61 0 427 276 88 47 chr1 91348883 91349075 -190844589 - MIR SINE MIR -10 252 53 * 787 325 117 26 chr1 91349062 91349634 -190844030 - L2 LINE L2 -1086 2228 1605 1391 251 102 49 chr1 91349675 91350165 -190843499 + MLT2B1 LTR ERVL 5 520 0 345 292 241 7 chr1 91352564 91352701 -190840963 + L2 LINE L2 2577 2745 -569 2087 107 0 4 chr1 91352705 91352986 -190840678 + AluSg SINE Alu 3 282 -28 186 43 0 0 chr1 91352990 91353013 -190840651 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 237 338 55 107 chr1 91353118 91353390 -190840274 + L2 LINE L2 3014 3271 -1 227 114 23 0 chr1 91354314 91354358 -190839306 + (TG)n Simple_repeat Simple_repeat 2 46 0 29 47 0 0 chr1 91354528 91354571 -190839093 + AT_rich Low_complexity Low_complexity 1 43 0 445 129 82 24 chr1 91356689 91356774 -190836890 + L2 LINE L2 3183 3272 0 21 0 0 0 chr1 91357179 91357200 -190836464 + AT_rich Low_complexity Low_complexity 1 21 0 254 186 0 0 chr1 91357651 91357694 -190835970 + MIR SINE MIR 109 151 -111 364 362 7 7 chr1 91358420 91358569 -190835095 + MIR SINE MIR 3 151 -111 2356 50 17 10 chr1 91360634 91360934 -190832730 + AluY SINE Alu 1 302 -9 229 363 19 51 chr1 91361427 91361584 -190832080 - MIR SINE MIR -92 170 19 25 65 0 0 chr1 91362854 91362900 -190830764 + AT_rich Low_complexity Low_complexity 1 46 0 294 226 83 0 chr1 91362926 91363010 -190830654 - MIR SINE MIR -73 189 99 1101 116 97 10 chr1 91363108 91363315 -190830349 - L1MA6 LINE L1 -3 6297 6073 341 117 17 0 chr1 91363793 91363853 -190829811 + (TA)n Simple_repeat Simple_repeat 1 61 0 326 319 72 51 chr1 91364131 91364407 -190829257 + L1MC4a LINE L1 2154 2435 -3711 1403 189 65 82 chr1 91364781 91365242 -190828422 + MLT2A2 LTR ERVL 1 453 0 234 0 0 0 chr1 91365375 91365401 -190828263 + (A)n Simple_repeat Simple_repeat 1 26 0 1765 182 80 44 chr1 91366189 91366553 -190827111 + MSTB1 LTR MaLR 16 396 -36 1921 164 0 0 chr1 91366553 91366845 -190826819 - AluSx SINE Alu -20 292 1 1765 182 80 44 chr1 91366845 91366870 -190826794 + MSTB1 LTR MaLR 396 419 -13 23 0 0 0 chr1 91367414 91367437 -190826227 + AT_rich Low_complexity Low_complexity 1 23 0 489 294 35 19 chr1 91367561 91367874 -190825790 + L1MC4a LINE L1 2852 3169 -2977 263 261 65 85 chr1 91368114 91368267 -190825397 + L1MC4a LINE L1 3692 3841 -2305 35 0 0 0 chr1 91368316 91368351 -190825313 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr1 91368395 91368421 -190825243 + (CA)n Simple_repeat Simple_repeat 1 26 0 481 306 42 21 chr1 91369444 91369777 -190823887 + L1MC4a LINE L1 5617 5959 -162 264 30 0 0 chr1 91369777 91369810 -190823854 + (TG)n Simple_repeat Simple_repeat 2 34 0 331 310 10 0 chr1 91370817 91370917 -190822747 - MER117 DNA MER1_type -41 156 56 1419 221 25 65 chr1 91371998 91372477 -190821187 - LTR37B LTR ERV1 0 468 9 23 0 0 0 chr1 91372883 91372906 -190820758 + AT_rich Low_complexity Low_complexity 1 23 0 222 236 69 42 chr1 91373601 91373673 -190819991 - MIR SINE MIR 0 262 189 270 331 110 16 chr1 91375642 91375769 -190817895 - L2 LINE L2 -5 3308 3170 366 347 6 36 chr1 91375964 91376131 -190817533 + LTR16A LTR ERVL 190 351 -99 341 306 10 97 chr1 91377115 91377318 -190816346 - MIR SINE MIR -56 206 18 2100 122 54 23 chr1 91378017 91378370 -190815294 + THE1B LTR MaLR 1 364 0 311 343 54 50 chr1 91378613 91378852 -190814812 - L2 LINE L2 -190 3082 2843 32 43 0 0 chr1 91379543 91379589 -190814075 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr1 91380100 91380124 -190813540 + AT_rich Low_complexity Low_complexity 1 24 0 272 373 64 10 chr1 91380276 91380480 -190813184 + L2 LINE L2 2837 3051 -221 26 0 0 0 chr1 91381246 91381272 -190812392 + AT_rich Low_complexity Low_complexity 1 26 0 5187 80 12 26 chr1 91381296 91382025 -190811639 - L1PA10 LINE L1 -17 6151 5433 1098 114 26 5 chr1 91382027 91382277 -190811387 + L1PA10 LINE L1 5189 5450 -724 40 21 0 0 chr1 91383338 91383385 -190810279 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr1 91383422 91383444 -190810220 + AT_rich Low_complexity Low_complexity 1 22 0 1126 183 33 116 chr1 91384014 91384412 -190809252 - MLT1A1 LTR MaLR 0 365 1 4368 237 76 40 chr1 91384416 91385773 -190807891 - MLT1A1-int LTR MaLR -11 1724 325 665 277 33 5 chr1 91385821 91386005 -190807659 - MER5A DNA MER1_type 0 189 1 181 0 69 0 chr1 91386412 91386441 -190807223 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 232 374 0 54 chr1 91386592 91386739 -190806925 + MIR3 SINE MIR 20 158 -50 193 394 92 14 chr1 91386761 91386903 -190806761 - MER5B DNA MER1_type -25 153 1 996 298 37 37 chr1 91387264 91387667 -190805997 - LTR16B LTR ERVL 0 464 62 319 301 53 0 chr1 91388162 91388275 -190805389 - MIR SINE MIR -56 206 88 304 333 70 26 chr1 91389055 91389211 -190804453 - MIR3 SINE MIR -41 167 5 417 375 110 38 chr1 91389605 91390353 -190803311 + L2 LINE L2 2452 3269 -3 978 288 79 45 chr1 91390831 91391998 -190801666 + L1ME LINE L1 141 1360 -4855 2136 112 3 3 chr1 91391998 91392302 -190801362 + AluY SINE Alu 1 304 -7 978 288 79 45 chr1 91392302 91392451 -190801213 + L1ME LINE L1 1360 1503 -4712 521 242 83 77 chr1 91392497 91393155 -190800509 + L1ME LINE L1 1925 2555 -3660 3472 260 88 45 chr1 91393212 91394664 -190799000 + L1M4 LINE L1 3209 4598 -1548 1910 234 78 37 chr1 91394664 91395263 -190798401 + MLT1E3 LTR MaLR 1 624 0 3472 260 88 45 chr1 91395263 91395663 -190798001 + L1M4 LINE L1 4598 5156 -990 1491 41 0 26 chr1 91395663 91395858 -190797806 + L1PA5 LINE L1 5963 6152 -2 3472 260 88 45 chr1 91395858 91396019 -190797645 + L1M4 LINE L1 5156 5309 -837 12229 168 35 23 chr1 91396045 91398409 -190795255 + L1M4c LINE L1 12 2414 -3968 2063 131 0 22 chr1 91398409 91398721 -190794943 + AluSx SINE Alu 1 305 -7 12229 168 35 23 chr1 91398721 91398886 -190794778 + L1M4c LINE L1 2414 2576 -3806 13615 16 1 0 chr1 91398987 91401343 -190792321 + L1HS LINE L1 3798 6155 0 25 0 0 0 chr1 91401343 91401368 -190792296 + AT_rich Low_complexity Low_complexity 1 25 0 229 150 150 0 chr1 91401368 91401428 -190792236 + L1ME LINE L1 5815 5883 -238 342 0 0 0 chr1 91401451 91401489 -190792175 + (A)n Simple_repeat Simple_repeat 1 38 0 648 229 34 23 chr1 91401489 91401664 -190792000 + MSTD LTR MaLR 69 245 -151 * 767 190 5 77 chr1 91401646 91401841 -190791823 + MSTD LTR MaLR 204 384 -12 2322 265 76 67 chr1 91401841 91404692 -190788972 - L1M4c LINE L1 -3180 3777 798 297 314 75 31 chr1 91404838 91405064 -190788600 - L1M4c LINE L1 -6613 246 11 547 343 64 0 chr1 91405425 91405644 -190788020 + MIR SINE MIR 20 252 -10 2089 167 47 28 chr1 91406064 91406489 -190787175 + Tigger2a DNA MER2_type 2 434 0 464 339 36 6 chr1 91408064 91408232 -190785432 + MIR SINE MIR 2 174 -88 26 0 0 0 chr1 91408257 91408283 -190785381 + AT_rich Low_complexity Low_complexity 1 26 0 2138 293 64 22 chr1 91408934 91410588 -190783076 - L1M2 LINE L1 -4177 1858 3 2160 87 0 14 chr1 91411336 91411676 -190781988 - AluY SINE Alu 0 336 1 273 288 0 0 chr1 91411758 91411824 -190781840 - L2 LINE L2 -3 3269 3204 207 0 0 0 chr1 91412080 91412103 -190781561 + (T)n Simple_repeat Simple_repeat 1 23 0 439 256 107 30 chr1 91412639 91412807 -190780857 - MER5A DNA MER1_type 0 189 9 518 355 77 39 chr1 91413469 91413988 -190779676 - L2 LINE L2 -1003 2311 1773 2044 152 10 68 chr1 91415005 91415419 -190778245 - MLT1B LTR MaLR 0 390 1 2001 258 98 9 chr1 91415421 91415953 -190777711 - MLT1E LTR MaLR -4 589 11 603 302 156 37 chr1 91416321 91416952 -190776712 - L2 LINE L2 -6 3307 2590 268 243 68 0 chr1 91416996 91417070 -190776594 + MER58 DNA MER1_type 44 122 -93 312 308 28 28 chr1 91417083 91417190 -190776474 - L2 LINE L2 -864 2450 2344 588 292 95 62 chr1 91417237 91417734 -190775930 + LTR67 LTR ERVL 43 555 -2 1678 183 3 3 chr1 91417901 91418218 -190775446 + L1MB3 LINE L1 5858 6174 -9 1335 251 40 3 chr1 91418227 91418598 -190775066 + L1ME3 LINE L1 5318 5702 -462 319 194 135 139 chr1 91418593 91418830 -190774834 + L1ME3 LINE L1 5916 6151 -11 * 237 108 0 0 chr1 91418832 91418869 -190774795 + (CAT)n Simple_repeat Simple_repeat 2 38 0 259 229 36 12 chr1 91418923 91419006 -190774658 + L1MC5 LINE L1 7832 7916 -45 320 358 123 11 chr1 91419134 91419321 -190774343 - MIR SINE MIR -50 212 5 21 0 0 0 chr1 91419413 91419434 -190774230 + AT_rich Low_complexity Low_complexity 1 21 0 245 29 0 29 chr1 91419852 91419887 -190773777 + (TA)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chr1 91419886 91419913 -190773751 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 342 237 72 22 chr1 91419930 91420069 -190773595 + THE1C LTR MaLR 2 147 -228 1558 154 61 13 chr1 91420173 91420484 -190773180 + THE1C LTR MaLR 50 375 0 1712 213 30 3 chr1 91420523 91420861 -190772803 - MLT2C1 LTR ERVL -50 347 1 232 241 121 0 chr1 91422228 91422286 -190771378 + MIR SINE MIR 104 168 -94 * 240 342 13 0 chr1 91422270 91422346 -190771318 - L2 LINE L2 0 3272 3196 196 320 40 0 chr1 91423041 91423141 -190770523 - MIR SINE MIR -2 260 157 588 291 67 5 chr1 91423172 91423395 -190770269 + MIR SINE MIR 26 262 0 23 33 0 0 chr1 91424794 91424824 -190768840 + AT_rich Low_complexity Low_complexity 1 30 0 757 53 0 0 chr1 91425300 91425395 -190768269 - L1PA4 LINE L1 -5 6150 6056 376 291 31 8 chr1 91426068 91426195 -190767469 - L2 LINE L2 0 3313 3184 321 372 78 0 chr1 91426544 91426673 -190766991 + L2 LINE L2 3134 3272 0 23 68 0 0 chr1 91427244 91427288 -190766376 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr1 91427513 91427536 -190766128 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr1 91427933 91427968 -190765696 + AT_rich Low_complexity Low_complexity 1 35 0 2100 143 65 3 chr1 91430131 91430516 -190763148 - L1MA9 LINE L1 -121 6191 5783 573 238 7 0 chr1 91430620 91430771 -190762893 - L1MA9 LINE L1 0 6312 6161 228 35 0 0 chr1 91431625 91431654 -190762010 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1 91432703 91432724 -190760940 + AT_rich Low_complexity Low_complexity 1 21 0 288 338 101 7 chr1 91433146 91433285 -190760379 - L3 LINE CR1 -23 1554 1403 2088 170 5 10 chr1 91433286 91433669 -190759995 - L1PB4 LINE L1 0 6156 5776 187 103 44 44 chr1 91433670 91433738 -190759926 + (CATAT)n Simple_repeat Simple_repeat 3 70 0 899 147 37 6 chr1 91433740 91433903 -190759761 - L1PB4 LINE L1 -367 5789 5622 709 347 169 9 chr1 91433935 91434463 -190759201 - L3 LINE CR1 -225 1352 741 266 360 75 6 chr1 91434504 91434665 -190758999 - L3 LINE CR1 -955 622 451 35 0 0 0 chr1 91435238 91435273 -190758391 + AT_rich Low_complexity Low_complexity 1 35 0 958 182 0 0 chr1 91435631 91435796 -190757868 + MER2 DNA MER2_type 41 205 -140 21 36 0 0 chr1 91435803 91435831 -190757833 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 91435955 91435985 -190757679 + AT_rich Low_complexity Low_complexity 1 30 0 216 330 75 11 chr1 91436393 91436487 -190757177 + MIR SINE MIR 1 100 -162 2212 214 40 6 chr1 91436514 91436653 -190757011 - MER45B DNA AcHobo -546 1035 902 2117 50 86 0 chr1 91436653 91436932 -190756732 - AluY SINE Alu -8 303 1 2212 214 40 6 chr1 91436932 91437312 -190756352 - MER45B DNA AcHobo -679 902 498 1045 281 33 13 chr1 91437412 91437711 -190755953 - MER45B DNA AcHobo -735 305 1 217 186 169 0 chr1 91437776 91437835 -190755829 + L2 LINE L2 3204 3272 0 23 0 0 0 chr1 91437863 91437886 -190755778 + AT_rich Low_complexity Low_complexity 1 23 0 215 333 12 24 chr1 91438098 91438182 -190755482 + L2 LINE L2 3195 3277 -36 486 139 13 0 chr1 91439027 91439106 -190754558 + MADE1 DNA Mariner 1 80 0 680 318 38 23 chr1 91439189 91439585 -190754079 - L1MC4a LINE L1 -1873 5935 5534 973 159 25 0 chr1 91440461 91440618 -190753046 + FRAM SINE Alu 1 158 -18 211 381 0 12 chr1 91440650 91440734 -190752930 + MER5A DNA MER1_type 99 181 -8 254 369 23 23 chr1 91441159 91441289 -190752375 - MIR SINE MIR -113 149 20 205 316 164 12 chr1 91441868 91442039 -190751625 - MIR SINE MIR -18 244 48 1135 273 63 32 chr1 91443184 91443864 -190749800 + L1ME3 LINE L1 5181 5874 -288 1774 158 59 0 chr1 91444072 91444395 -190749269 - MER2 DNA MER2_type 0 344 3 495 0 0 0 chr1 91444395 91444450 -190749214 + (TG)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr1 91444604 91444631 -190749033 + AT_rich Low_complexity Low_complexity 1 27 0 205 181 36 48 chr1 91444655 91444738 -190748926 + GA-rich Low_complexity Low_complexity 2 83 0 223 351 91 6 chr1 91444738 91444891 -190748773 + MIR SINE MIR 41 205 -57 767 194 19 57 chr1 91445589 91445800 -190747864 + MER20 DNA MER1_type 1 203 -16 22 0 0 0 chr1 91446333 91446355 -190747309 + AT_rich Low_complexity Low_complexity 1 22 0 1915 136 11 0 chr1 91447053 91447333 -190746331 + AluJb SINE Alu 1 283 -29 188 0 74 0 chr1 91447336 91447363 -190746301 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 289 324 10 0 chr1 91449430 91449532 -190744132 + T-rich Low_complexity Low_complexity 4 106 0 228 343 129 49 chr1 91450004 91450290 -190743374 - L3 LINE CR1 -187 1390 1082 189 0 0 0 chr1 91450673 91450694 -190742970 + (T)n Simple_repeat Simple_repeat 1 21 0 326 325 41 41 chr1 91451320 91451517 -190742147 - L3 LINE CR1 -709 868 672 23 33 0 0 chr1 91452345 91452375 -190741289 + AT_rich Low_complexity Low_complexity 1 30 0 377 324 81 29 chr1 91453905 91453949 -190739715 + Charlie8 DNA MER1_type 89 129 -2288 1901 109 8 0 chr1 91453949 91454216 -190739448 - AluSx SINE Alu -5 307 39 377 324 81 29 chr1 91454216 91454344 -190739320 + Charlie8 DNA MER1_type 129 270 -2147 1344 157 0 0 chr1 91455733 91455949 -190737715 + AluSg/x SINE Alu 95 310 0 1057 164 0 0 chr1 91456549 91456726 -190736938 - AluSg/x SINE Alu -2 308 132 572 200 0 0 chr1 91456814 91456919 -190736745 + L1P LINE L1 3359 3463 -2683 284 215 38 38 chr1 91457796 91457875 -190735789 + L3 LINE CR1 575 653 -924 382 314 58 47 chr1 91458181 91458372 -190735292 + MIR SINE MIR 24 216 -46 1713 127 0 16 chr1 91458538 91458807 -190734857 - AluSx SINE Alu 0 308 44 932 329 145 18 chr1 91458871 91459552 -190734112 + L3 LINE CR1 653 1420 -157 23 33 0 0 chr1 91459729 91459759 -190733905 + AT_rich Low_complexity Low_complexity 1 30 0 429 217 23 8 chr1 91460476 91460605 -190733059 + GA-rich Low_complexity Low_complexity 2 132 0 295 287 25 8 chr1 91462900 91463022 -190730642 + GA-rich Low_complexity Low_complexity 4 127 0 323 336 53 8 chr1 91463364 91463495 -190730169 + LTR16A LTR ERVL 81 217 -233 278 314 110 64 chr1 91463753 91463989 -190729675 - MIR SINE MIR -10 252 6 219 408 57 19 chr1 91464162 91464319 -190729345 - L2 LINE L2 -8 3264 3102 332 285 81 0 chr1 91464870 91464993 -190728671 + L2 LINE L2 3181 3313 0 210 254 0 79 chr1 91465014 91465077 -190728587 - L2 LINE L2 -2 3311 3254 484 295 35 59 chr1 91465353 91465607 -190728057 + MIR SINE MIR 9 256 -6 3234 153 61 11 chr1 91465651 91466221 -190727443 + LTR26 LTR ERV1 1 599 -4 232 289 54 114 chr1 91468118 91468284 -190725380 - MIR3 SINE MIR -37 171 16 21 36 0 0 chr1 91468290 91468318 -190725346 + AT_rich Low_complexity Low_complexity 1 28 0 330 303 15 8 chr1 91468391 91468523 -190725141 - MIR SINE MIR -51 211 79 321 257 42 117 chr1 91470244 91470468 -190723196 + MIR SINE MIR 5 215 -47 184 347 0 28 chr1 91471082 91471154 -190722510 - L2 LINE L2 -3 3269 3200 2465 179 27 5 chr1 91471575 91472022 -190721642 - MSTB2 LTR MaLR 0 457 1 200 317 154 0 chr1 91472997 91473101 -190720563 + L2 LINE L2 3153 3272 0 2832 10 0 0 chr1 91473262 91473574 -190720090 + AluYb8 SINE Alu 1 312 -6 23 0 0 0 chr1 91473859 91473882 -190719782 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 91474104 91474125 -190719539 + AT_rich Low_complexity Low_complexity 1 21 0 371 118 47 0 chr1 91474164 91474249 -190719415 + (TA)n Simple_repeat Simple_repeat 2 90 0 402 343 77 0 chr1 91474358 91474539 -190719125 + L2 LINE L2 2090 2284 -1030 1522 194 93 6 chr1 91524778 91525102 -190668562 - MLT1E1 LTR MaLR -301 353 2 31 0 0 0 chr1 91525428 91525459 -190668205 + AT_rich Low_complexity Low_complexity 1 31 0 315 85 0 0 chr1 91525678 91525725 -190667939 + (TC)n Simple_repeat Simple_repeat 2 48 0 262 229 0 0 chr1 91526283 91526344 -190667320 + (TA)n Simple_repeat Simple_repeat 2 62 0 2055 117 7 0 chr1 91526645 91526961 -190666703 + AluSx SINE Alu 1 318 0 216 264 88 22 chr1 91527673 91527688 -190665976 - MIR SINE MIR -50 212 199 816 265 0 0 chr1 91527688 91527877 -190665787 + MER5A DNA MER1_type 1 189 0 216 264 88 22 chr1 91527877 91527952 -190665712 - MIR SINE MIR -63 199 116 661 301 62 28 chr1 91527964 91528412 -190665252 - LTR33A LTR ERVL 0 523 1 208 302 38 57 chr1 91528418 91528524 -190665140 - MIR SINE MIR -145 117 14 305 24 24 0 chr1 91528898 91528940 -190664724 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr1 91529647 91529689 -190663975 + AT_rich Low_complexity Low_complexity 1 42 0 1463 249 37 64 chr1 91530693 91531015 -190662649 - LTR16A LTR ERVL 0 450 142 521 88 12 12 chr1 91531015 91531095 -190662569 + MADE1 DNA Mariner 1 80 0 1463 249 37 64 chr1 91531095 91531209 -190662455 - LTR16A LTR ERVL -308 142 26 301 274 0 0 chr1 91531336 91531398 -190662266 + L2 LINE L2 3246 3307 -6 258 360 0 0 chr1 91532416 91532505 -190661159 + CT-rich Low_complexity Low_complexity 2 90 0 243 0 0 0 chr1 91532712 91532739 -190660925 + (TAA)n Simple_repeat Simple_repeat 1 27 0 433 297 90 7 chr1 91534417 91534562 -190659102 - MIR SINE MIR -86 176 20 1969 98 4 4 chr1 91534662 91534937 -190658727 + AluY SINE Alu 37 311 0 349 297 51 0 chr1 91535593 91535711 -190657953 + MLT1J2 LTR MaLR 94 217 -233 39 0 0 0 chr1 91536046 91536085 -190657579 + AT_rich Low_complexity Low_complexity 1 39 0 735 310 76 34 chr1 91536137 91536544 -190657120 - L2 LINE L2 -3 3310 2887 1303 168 53 11 chr1 91536573 91536891 -190656773 - MLT1B LTR MaLR -10 380 1 373 272 172 17 chr1 91536934 91537114 -190656550 - L2 LINE L2 -524 2790 2583 220 243 129 0 chr1 91537217 91537287 -190656377 - MIR SINE MIR -64 144 66 457 331 88 11 chr1 91537378 91537638 -190656026 + L2 LINE L2 2967 3246 -67 351 167 33 0 chr1 91537663 91537753 -190655911 + (TA)n Simple_repeat Simple_repeat 1 93 0 231 0 77 0 chr1 91537887 91537926 -190655738 + T-rich Low_complexity Low_complexity 40 81 0 301 160 93 27 chr1 91537930 91538005 -190655659 - L1M4 LINE L1 -512 5672 5593 5196 63 17 19 chr1 91538007 91538710 -190654954 - SVA Other Other 0 1386 685 180 0 0 0 chr1 91539959 91539979 -190653685 + (T)n Simple_repeat Simple_repeat 1 20 0 201 172 17 35 chr1 91541523 91541581 -190652083 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 315 85 0 0 chr1 91541771 91541818 -190651846 + (TC)n Simple_repeat Simple_repeat 2 48 0 254 321 57 47 chr1 91542017 91542123 -190651541 + MIR SINE MIR 18 124 -84 21 36 0 0 chr1 91542262 91542290 -190651374 + AT_rich Low_complexity Low_complexity 1 28 0 245 247 54 0 chr1 91542391 91542484 -190651180 - MER103 DNA DNA -53 113 16 187 268 0 0 chr1 91543626 91543667 -190649997 - MIR SINE MIR -76 132 92 378 279 147 0 chr1 91544011 91544140 -190649524 - MIR SINE MIR -21 241 94 337 323 44 52 chr1 91544173 91544402 -190649262 - MIR SINE MIR -27 235 9 591 343 50 0 chr1 91544614 91544853 -190648811 - MIR SINE MIR 0 262 12 24 0 0 0 chr1 91547271 91547295 -190646369 + AT_rich Low_complexity Low_complexity 1 24 0 419 113 14 0 chr1 91548187 91548258 -190645406 + (TA)n Simple_repeat Simple_repeat 1 72 0 185 407 66 0 chr1 91549386 91549477 -190644187 + L2 LINE L2 3199 3295 -18 447 322 174 43 chr1 91549833 91550716 -190642948 + L2 LINE L2 1049 1815 -1499 1125 239 5 0 chr1 91550716 91550938 -190642726 + MER58A DNA MER1_type 1 223 -1 447 322 174 43 chr1 91550938 91551500 -190642164 + L2 LINE L2 1815 2683 -631 312 48 0 0 chr1 91551547 91551589 -190642075 + (CA)n Simple_repeat Simple_repeat 2 43 0 279 415 7 0 chr1 91551737 91551872 -190641792 + L2 LINE L2 3137 3272 0 21 0 0 0 chr1 91551928 91551949 -190641715 + AT_rich Low_complexity Low_complexity 1 21 0 33 73 0 0 chr1 91552368 91552436 -190641228 + AT_rich Low_complexity Low_complexity 1 68 0 2308 83 0 23 chr1 91553963 91554264 -190639400 + AluSc SINE Alu 1 294 -15 2021 125 0 23 chr1 91554366 91554669 -190638995 + AluSc SINE Alu 14 309 0 279 271 90 45 chr1 91554875 91555008 -190638656 + MLT1J LTR MaLR 373 511 0 1082 200 78 6 chr1 91555014 91555346 -190638318 - MER119 DNA MER1_type -10 573 122 22 0 0 0 chr1 91557995 91558017 -190635647 + AT_rich Low_complexity Low_complexity 1 22 0 253 264 140 38 chr1 91559898 91560081 -190633583 + L1P4 LINE L1 5561 5790 -375 402 143 39 0 chr1 91560081 91560158 -190633506 + MER116 DNA Mariner 1 80 0 253 264 140 38 chr1 91560158 91560228 -190633436 + L1P4 LINE L1 5790 5851 -314 198 0 0 0 chr1 91560257 91560279 -190633385 + (TA)n Simple_repeat Simple_repeat 2 23 0 247 264 139 40 chr1 91561420 91561603 -190632061 + L1P4 LINE L1 5561 5788 -377 430 130 39 0 chr1 91561603 91561680 -190631984 + MER116 DNA Mariner 1 80 0 247 264 139 40 chr1 91561680 91561751 -190631913 + L1P4 LINE L1 5788 5851 -314 216 0 0 0 chr1 91561784 91561808 -190631856 + (TA)n Simple_repeat Simple_repeat 2 25 0 444 82 0 0 chr1 91562755 91562816 -190630848 + (TA)n Simple_repeat Simple_repeat 2 62 0 2113 94 3 44 chr1 91563545 91563864 -190629800 - AluSq SINE Alu -7 306 1 21 0 0 0 chr1 91564010 91564031 -190629633 + AT_rich Low_complexity Low_complexity 1 21 0 416 292 15 28 chr1 91564101 91564263 -190629401 - MIR SINE MIR -45 163 5 202 359 98 55 chr1 91564313 91564661 -190629003 - L2 LINE L2 -912 2402 2040 * 284 301 9 80 chr1 91564660 91564773 -190628891 + L2 LINE L2 3196 3300 -13 2070 144 0 0 chr1 91564858 91565164 -190628500 - AluSq SINE Alu -7 306 1 24 32 0 0 chr1 91565688 91565719 -190627945 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 91565825 91565847 -190627817 + AT_rich Low_complexity Low_complexity 1 22 0 365 312 57 19 chr1 91565958 91566115 -190627549 + MIR SINE MIR 19 181 -81 230 403 0 0 chr1 91566106 91566178 -190627486 + L2 LINE L2 3153 3224 -48 * 198 363 11 44 chr1 91567288 91567379 -190626285 + MIR SINE MIR 54 141 -67 318 321 18 67 chr1 91568706 91568871 -190624793 + MIR SINE MIR 70 226 -36 277 317 117 0 chr1 91569244 91569364 -190624300 - L3b LINE CR1 -171 1412 1279 427 323 16 0 chr1 91569514 91569641 -190624023 - L3b LINE CR1 -176 1407 1279 537 235 65 20 chr1 91570996 91571196 -190622468 - LTR54 LTR ERV1 -5 505 297 402 165 55 92 chr1 91571228 91571337 -190622327 - LTR54 LTR ERV1 -328 182 78 439 320 106 26 chr1 91571385 91571726 -190621938 - HAL1b LINE L1 -598 750 383 1921 86 7 76 chr1 91571728 91572032 -190621632 + AluSg1 SINE Alu 22 304 -5 689 222 75 0 chr1 91572040 91572261 -190621403 + L1ME2 LINE L1 5222 5456 -718 * 2389 157 57 22 chr1 91572255 91572381 -190621283 + L1MB3 LINE L1 5678 5798 -385 2619 36 0 3 chr1 91572381 91572689 -190620975 + AluY SINE Alu 1 307 -4 2389 157 57 22 chr1 91572689 91573022 -190620642 + L1MB3 LINE L1 5798 6153 -30 24 32 0 0 chr1 91573022 91573053 -190620611 + AT_rich Low_complexity Low_complexity 1 31 0 2098 219 129 19 chr1 91573162 91573798 -190619866 + L1ME2 LINE L1 5451 6156 -8 892 347 97 29 chr1 91574106 91574763 -190618901 + L2 LINE L2 1829 2530 -784 333 0 0 0 chr1 91574925 91574962 -190618702 + (CA)n Simple_repeat Simple_repeat 2 38 0 1624 161 0 19 chr1 91574968 91575235 -190618429 - AluJo SINE Alu -31 281 20 334 337 106 37 chr1 91575636 91575882 -190617782 + L2 LINE L2 2715 2977 -337 1532 232 14 17 chr1 91576122 91576484 -190617180 - MLT1A1 LTR MaLR -2 363 3 6162 108 21 11 chr1 91576571 91577535 -190616129 + L1MA3 LINE L1 5332 6304 -1 1002 220 42 58 chr1 91577895 91578154 -190615510 - AluJo SINE Alu -56 256 2 334 343 21 0 chr1 91578941 91579084 -190614580 + MIR SINE MIR 110 255 -7 267 180 33 0 chr1 91579541 91579602 -190614062 + MER4-int LTR ERV1 1111 1173 -5425 25 0 0 0 chr1 91579668 91579693 -190613971 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr1 91581285 91581311 -190612353 + AT_rich Low_complexity Low_complexity 1 26 0 2108 106 0 0 chr1 91582735 91583017 -190610647 - AluSc SINE Alu -27 282 1 198 191 0 0 chr1 91585667 91585709 -190607955 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 1873 169 0 3 chr1 91589060 91589362 -190604302 - AluJb SINE Alu -11 301 1 3807 234 58 26 chr1 91590665 91592151 -190601513 - MER52A LTR ERV1 0 1755 1 820 118 8 0 chr1 91592396 91592523 -190601141 + L1MA3 LINE L1 6178 6305 0 233 343 14 0 chr1 91593340 91593413 -190600251 - L2 LINE L2 -6 3307 3234 21 36 0 0 chr1 91593471 91593499 -190600165 + AT_rich Low_complexity Low_complexity 1 28 0 218 81 27 0 chr1 91594167 91594204 -190599460 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 78 0 0 chr1 91594611 91594662 -190599002 + AT_rich Low_complexity Low_complexity 1 51 0 223 247 96 0 chr1 91594778 91594851 -190598813 + MIR SINE MIR 65 144 -118 22 0 0 0 chr1 91594912 91594934 -190598730 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr1 91595842 91595880 -190597784 + (CA)n Simple_repeat Simple_repeat 1 38 0 455 78 39 13 chr1 91596040 91596117 -190597547 + L1PA5 LINE L1 6073 6151 -3 23 0 0 0 chr1 91596589 91596612 -190597052 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr1 91597234 91597274 -190596390 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 95 0 0 chr1 91597284 91597347 -190596317 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr1 91598270 91598305 -190595359 + AT_rich Low_complexity Low_complexity 1 35 0 377 250 57 32 chr1 91599109 91599233 -190594431 + MIR SINE MIR 66 192 -70 186 191 0 0 chr1 91599424 91599471 -190594193 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 1397 203 60 51 chr1 91600258 91600338 -190593326 + MLT1A1 LTR MaLR 6 84 -281 991 54 78 0 chr1 91600338 91600467 -190593197 + MER85 DNA T2_type 1 139 0 1397 203 60 51 chr1 91600467 91600736 -190592928 + MLT1A1 LTR MaLR 84 358 -7 3395 149 31 12 chr1 91603511 91604631 -190589033 - L1MA8 LINE L1 -10 6281 5110 39 80 0 0 chr1 91604745 91604833 -190588831 + AT_rich Low_complexity Low_complexity 1 88 0 243 267 12 47 chr1 91606446 91606532 -190587132 - MLT1L LTR MaLR -337 278 196 23 0 0 0 chr1 91606682 91606705 -190586959 + AT_rich Low_complexity Low_complexity 1 23 0 181 363 106 41 chr1 91607132 91607377 -190586287 + L3b LINE CR1 1317 1577 -6 25 0 0 0 chr1 91607491 91607516 -190586148 + AT_rich Low_complexity Low_complexity 1 25 0 2280 136 16 13 chr1 91609332 91609706 -190583958 - THE1C LTR MaLR 0 375 1 223 235 47 82 chr1 91609719 91609804 -190583860 - L2 LINE L2 -5 3267 3186 207 302 163 23 chr1 91609873 91610002 -190583662 - MIR SINE MIR -64 198 52 258 105 0 0 chr1 91610030 91610068 -190583596 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 487 301 124 10 chr1 91610449 91610642 -190583022 - MIR SINE MIR 0 262 48 339 276 44 77 chr1 91610957 91611138 -190582526 + MLT1J LTR MaLR 93 267 -244 825 268 167 9 chr1 91611339 91611656 -190582008 + L2 LINE L2 1567 1933 -1381 856 293 103 30 chr1 91611657 91612026 -190581638 + L2 LINE L2 2917 3312 -1 283 315 34 0 chr1 91612024 91612113 -190581551 - L2 LINE L2 -12 3301 3210 * 596 323 47 4 chr1 91612470 91612702 -190580962 + MIR SINE MIR 17 258 -4 22 80 0 0 chr1 91613100 91613150 -190580514 + AT_rich Low_complexity Low_complexity 1 50 0 188 305 200 0 chr1 91614336 91614431 -190579233 + L2 LINE L2 3200 3313 0 22 56 0 0 chr1 91614582 91614618 -190579046 + AT_rich Low_complexity Low_complexity 1 36 0 3542 193 169 97 chr1 91614695 91615123 -190578541 + L1MD3 LINE L1 6555 6951 -1044 1284 199 15 105 chr1 91615123 91615524 -190578140 + MLT1A1 LTR MaLR 1 365 0 3542 193 169 97 chr1 91615524 91615804 -190577860 + L1MD3 LINE L1 6951 7209 -786 459 233 0 10 chr1 91615804 91615907 -190577757 + MLT1F1 LTR MaLR 24 125 -442 3542 193 169 97 chr1 91615907 91616430 -190577234 + L1MD3 LINE L1 7209 7985 -10 22 0 0 0 chr1 91616915 91616937 -190576727 + AT_rich Low_complexity Low_complexity 1 22 0 502 325 107 13 chr1 91617653 91617887 -190575777 - MIR SINE MIR -1 261 6 23 0 0 0 chr1 91618574 91618597 -190575067 + AT_rich Low_complexity Low_complexity 1 23 0 605 80 10 20 chr1 91619201 91619301 -190574363 + L1MA1 LINE L1 6203 6301 -1 22 80 0 0 chr1 91619305 91619355 -190574309 + AT_rich Low_complexity Low_complexity 1 50 0 2577 61 0 0 chr1 91619402 91619712 -190573952 + AluY SINE Alu 1 310 -1 231 200 0 0 chr1 91619967 91620012 -190573652 - L2 LINE L2 0 3313 3269 1282 123 85 0 chr1 91620052 91620264 -190573400 - MER30 DNA MER1_type 0 230 1 237 276 61 0 chr1 91620529 91620627 -190573037 + MER112 DNA MER1_type 30 133 -127 2253 113 0 0 chr1 91620633 91620933 -190572731 + AluSq SINE Alu 1 300 -13 2228 94 3 0 chr1 91622051 91622348 -190571316 - AluSg SINE Alu -12 298 1 183 42 0 0 chr1 91623003 91623027 -190570637 + (CA)n Simple_repeat Simple_repeat 2 25 0 209 159 23 0 chr1 91623159 91623203 -190570461 + (TA)n Simple_repeat Simple_repeat 2 46 0 221 158 26 0 chr1 91623305 91623343 -190570321 + CT-rich Low_complexity Low_complexity 3 41 0 545 276 222 0 chr1 91623933 91624306 -190569358 + Charlie2a DNA MER1_type 6 470 -2392 360 232 122 46 chr1 91624309 91624479 -190569185 + Charlie2a DNA MER1_type 734 932 -1930 2033 127 7 7 chr1 91624479 91624778 -190568886 - AluSp SINE Alu -14 299 1 360 232 122 46 chr1 91624778 91624870 -190568794 + Charlie2a DNA MER1_type 932 1016 -1846 560 322 167 43 chr1 91625383 91626151 -190567513 + L2 LINE L2 2418 3268 -4 2357 109 0 0 chr1 91626438 91626742 -190566922 - AluSx SINE Alu -8 304 1 2052 98 22 32 chr1 91626911 91627227 -190566437 - AluSp SINE Alu 0 313 1 337 355 0 42 chr1 91627699 91627916 -190565748 + MIR SINE MIR 10 217 -45 789 353 76 21 chr1 91628024 91628738 -190564926 + L2 LINE L2 2355 3099 -214 29 28 0 0 chr1 91628739 91628775 -190564889 + AT_rich Low_complexity Low_complexity 1 36 0 1687 174 0 10 chr1 91628776 91629064 -190564600 - AluJb SINE Alu -26 286 2 12008 150 97 19 chr1 91629111 91631353 -190562311 + Tigger1 DNA MER2_type 2 2418 0 241 225 22 34 chr1 91631360 91631449 -190562215 + L1ME LINE L1 5347 5434 -687 1352 166 4 4 chr1 91631538 91631779 -190561885 - L1PA15 LINE L1 0 6165 5925 1002 180 5 11 chr1 91631789 91631978 -190561686 - L1PA15 LINE L1 -401 5764 5577 926 177 0 18 chr1 91632183 91632347 -190561317 + Tigger1 DNA MER2_type 2257 2417 -1 3934 144 99 24 chr1 91632435 91633828 -190559836 + pTR5 LTR ERV1 743 2606 0 194 278 19 0 chr1 91633831 91633885 -190559779 + L2 LINE L2 3243 3297 -16 2738 22 0 6 chr1 91634282 91634595 -190559069 + AluY SINE Alu 1 311 0 26 0 0 0 chr1 91635158 91635184 -190558480 + AT_rich Low_complexity Low_complexity 1 26 0 7444 242 29 56 chr1 91635464 91636892 -190556772 + L1 LINE L1 27 1492 -5675 996 243 143 36 chr1 91636892 91637250 -190556414 + MSTD LTR MaLR 1 396 0 7444 242 29 56 chr1 91637250 91638265 -190555399 + L1 LINE L1 1492 2533 -4634 183 42 0 0 chr1 91638265 91638289 -190555375 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1769 158 4 7 chr1 91638292 91638564 -190555100 - AluSx SINE Alu -37 275 5 7444 242 29 56 chr1 91638564 91640443 -190553221 + L1 LINE L1 2535 3934 -3233 5846 194 46 8 chr1 91640433 91640971 -190552693 + L1 LINE L1 4867 5383 -1784 * 1811 162 0 13 chr1 91640971 91641256 -190552408 + AluSx SINE Alu 1 283 -29 273 29 0 0 chr1 91641256 91641290 -190552374 + (CA)n Simple_repeat Simple_repeat 1 34 0 1811 162 0 13 chr1 91641290 91641307 -190552357 + AluSx SINE Alu 283 299 -13 5846 194 46 8 chr1 91641307 91641962 -190551702 + L1 LINE L1 5383 6105 -1062 623 251 77 16 chr1 91641954 91642201 -190551463 + L1MA9 LINE L1 6013 6274 -38 * 1511 189 3 40 chr1 91642390 91642686 -190550978 - AluJo SINE Alu -27 285 1 187 318 129 12 chr1 91643406 91643491 -190550173 + L2 LINE L2 3199 3293 -20 304 275 0 70 chr1 91643718 91643833 -190549831 + MIR SINE MIR 66 171 -63 21 0 0 0 chr1 91645327 91645348 -190548316 + AT_rich Low_complexity Low_complexity 1 21 0 741 174 0 0 chr1 91645348 91645480 -190548184 - L1MA2 LINE L1 0 6304 6173 14238 174 43 12 chr1 91645480 91649746 -190543918 - L1M1 LINE L1 -487 7236 2840 613 143 0 0 chr1 91649750 91649848 -190543816 - AluJb SINE Alu -10 302 205 6301 163 24 13 chr1 91649848 91650953 -190542711 - L1M1 LINE L1 -6429 1136 20 1923 162 0 7 chr1 91651468 91651770 -190541894 + AluJb SINE Alu 5 304 -8 22 0 0 0 chr1 91652044 91652066 -190541598 + AT_rich Low_complexity Low_complexity 1 22 0 858 237 53 0 chr1 91653778 91653985 -190539679 + MER20 DNA MER1_type 2 219 0 357 289 25 31 chr1 91654002 91654161 -190539503 - L1ME3A LINE L1 -50 6120 5963 399 312 26 63 chr1 91656251 91656440 -190537224 + MER5A DNA MER1_type 1 182 -7 400 235 104 0 chr1 91656728 91656843 -190536821 - MIR SINE MIR -96 166 40 8587 114 20 6 chr1 91657778 91659047 -190534617 - HSMAR1 DNA Mariner 0 1287 1 1661 181 3 0 chr1 91659403 91659737 -190533927 + AluJb SINE Alu 1 335 0 584 197 7 73 chr1 91661070 91661207 -190532457 - FLAM_A SINE Alu -5 128 1 781 195 28 93 chr1 91661210 91661425 -190532239 - MER20 DNA MER1_type -18 201 1 755 306 36 80 chr1 91662887 91663299 -190530365 - L2 LINE L2 -81 3232 2839 208 121 0 0 chr1 91663550 91663583 -190530081 + (CAAAC)n Simple_repeat Simple_repeat 3 35 0 189 0 0 0 chr1 91663807 91663828 -190529836 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 494 299 19 59 chr1 91664026 91664297 -190529367 - MLT1K LTR MaLR 0 588 329 1064 257 29 4 chr1 91665171 91665416 -190528248 + MIR SINE MIR 2 252 -10 183 42 0 0 chr1 91666491 91666515 -190527149 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 135 0 0 chr1 91666741 91666778 -190526886 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 27 29 0 0 chr1 91669175 91669209 -190524455 + AT_rich Low_complexity Low_complexity 1 34 0 923 70 78 0 chr1 91669960 91670089 -190523575 + MER85 DNA T2_type 1 139 0 1469 155 97 0 chr1 91670120 91670378 -190523286 + MER1B DNA MER1_type 57 339 0 31 26 0 0 chr1 91670607 91670645 -190523019 + AT_rich Low_complexity Low_complexity 1 38 0 328 277 128 0 chr1 91673050 91673144 -190520520 - MIR SINE MIR -94 168 63 209 105 0 26 chr1 91673909 91673947 -190519717 + (TTC)n Simple_repeat Simple_repeat 2 38 0 2176 117 3 0 chr1 91674220 91674518 -190519146 + AluSq SINE Alu 1 299 -14 519 366 83 26 chr1 91675163 91675622 -190518042 + MLT1K LTR MaLR 40 524 -64 23 33 0 0 chr1 91677255 91677285 -190516379 + AT_rich Low_complexity Low_complexity 1 30 0 395 345 108 76 chr1 91678852 91679249 -190514415 - L2 LINE L2 0 3272 2863 406 322 168 0 chr1 91679277 91679479 -190514185 - MIR SINE MIR -25 237 2 26 0 0 0 chr1 91679680 91679706 -190513958 + AT_rich Low_complexity Low_complexity 1 26 0 2222 92 0 0 chr1 91679782 91680077 -190513587 - AluSc SINE Alu -14 295 1 940 244 24 53 chr1 91680251 91680591 -190513073 - L2 LINE L2 0 3313 2984 383 268 89 58 chr1 91680715 91680905 -190512759 + MIR SINE MIR 2 197 -65 337 282 64 27 chr1 91681161 91681271 -190512393 - MIR SINE MIR -63 145 32 224 333 91 59 chr1 91681597 91681816 -190511848 - L2 LINE L2 -493 2821 2596 2011 122 162 5 chr1 91682361 91682731 -190510933 - MSTA LTR MaLR 0 428 1 255 265 0 29 chr1 91683607 91683709 -190509955 + GA-rich Low_complexity Low_complexity 2 100 0 400 295 128 7 chr1 91684960 91685109 -190508555 - MIR SINE MIR -68 194 28 21 0 0 0 chr1 91687332 91687353 -190506311 + AT_rich Low_complexity Low_complexity 1 21 0 1538 161 88 28 chr1 91687587 91687941 -190505723 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr1 91689099 91689122 -190504542 + AT_rich Low_complexity Low_complexity 1 23 0 699 126 63 16 chr1 91690463 91690590 -190503074 + THE1C LTR MaLR 3 135 -240 237 33 0 0 chr1 91690840 91690870 -190502794 + (CA)n Simple_repeat Simple_repeat 1 30 0 407 301 136 24 chr1 91690893 91691099 -190502565 + MIR SINE MIR 20 248 -14 261 243 15 29 chr1 91691625 91691761 -190501903 + (TTTAA)n Simple_repeat Simple_repeat 3 136 0 939 303 105 26 chr1 91691957 91692347 -190501317 - MLT1J2 LTR MaLR 0 450 30 2925 213 62 16 chr1 91692910 91693697 -190499967 + L1ME1 LINE L1 5356 6334 0 1169 273 82 9 chr1 91693720 91694145 -190499519 + L1MC4 LINE L1 7443 7898 -144 21 36 0 0 chr1 91694196 91694224 -190499440 + AT_rich Low_complexity Low_complexity 1 28 0 3211 212 34 30 chr1 91694228 91695095 -190498569 + L1ME1 LINE L1 5287 6157 -9 751 255 77 87 chr1 91695811 91696215 -190497449 + MLT1I LTR MaLR 1 400 -9 2441 97 12 79 chr1 91696822 91697226 -190496438 + MER51B LTR ERV1 1 377 0 620 328 49 18 chr1 91698367 91698775 -190494889 + L2 LINE L2 2624 3049 -264 27 49 0 0 chr1 91699774 91699815 -190493849 + AT_rich Low_complexity Low_complexity 1 41 0 1441 125 18 48 chr1 91700027 91700299 -190493365 - L1MA6 LINE L1 -5 6295 6032 2067 128 7 3 chr1 91700308 91700612 -190493052 - AluSx SINE Alu -7 305 1 777 273 114 44 chr1 91700979 91701320 -190492344 + MER115 DNA AcHobo 328 692 -1 426 305 48 32 chr1 91701557 91701744 -190491920 + MLT1I LTR MaLR 63 252 -157 1299 320 17 38 chr1 91701776 91702417 -190491247 + L1PA16 LINE L1 1 1404 -6170 383 273 0 36 chr1 91702512 91702622 -190491042 + L1PA16 LINE L1 2084 2189 -5392 2230 103 0 7 chr1 91702766 91703067 -190490597 + AluSg SINE Alu 2 300 -10 1025 312 28 10 chr1 91703156 91703553 -190490111 + L1PA16 LINE L1 2182 2585 -4996 * 9672 201 29 15 chr1 91703548 91704536 -190489128 + L1PA16 LINE L1 4191 5164 -2440 1752 189 0 3 chr1 91704536 91704833 -190488831 + AluJb SINE Alu 1 296 -16 9672 201 29 15 chr1 91704833 91707205 -190486459 + L1PA16 LINE L1 5164 7595 -9 415 283 33 0 chr1 91707228 91707348 -190486316 + MLT1I LTR MaLR 269 392 -17 608 178 8 8 chr1 91707717 91707835 -190485829 + FLAM_C SINE Alu 1 118 -15 244 298 50 25 chr1 91707937 91708058 -190485606 - MIR SINE MIR -59 203 80 180 281 135 67 chr1 91708308 91708397 -190485267 - MIR SINE MIR -98 164 70 362 386 74 17 chr1 91708693 91709110 -190484554 + L2 LINE L2 2226 2666 -648 2616 106 8 11 chr1 91710870 91711246 -190482418 - THE1C LTR MaLR 0 375 1 1958 128 14 0 chr1 91712288 91712584 -190481080 + AluSx SINE Alu 1 300 -12 426 219 28 177 chr1 91714077 91714365 -190479299 + MIR SINE MIR 8 252 -10 248 204 19 0 chr1 91714441 91714495 -190479169 + (TA)n Simple_repeat Simple_repeat 2 56 0 301 243 26 92 chr1 91714918 91715070 -190478594 + L1ME4a LINE L1 5979 6120 -1 200 359 68 8 chr1 91715542 91715659 -190478005 + L2 LINE L2 3170 3293 -20 1291 269 94 54 chr1 91715683 91716576 -190477088 + L2 LINE L2 2359 3276 -37 195 42 0 0 chr1 91716701 91716725 -190476939 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 577 173 16 0 chr1 91717500 91717627 -190476037 + CT-rich Low_complexity Low_complexity 2 130 0 2225 93 0 6 chr1 91717628 91717941 -190475723 - AluY SINE Alu 0 311 1 2672 232 57 31 chr1 91718126 91719558 -190474106 - L1ME1 LINE L1 -3 6232 4773 1391 295 76 19 chr1 91719555 91719579 -190474085 - L1ME1 LINE L1 -5689 707 686 * 207 0 0 0 chr1 91719579 91719602 -190474062 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1391 295 76 19 chr1 91719602 91720218 -190473446 - L1ME1 LINE L1 -5710 686 30 1805 248 39 14 chr1 91720649 91721298 -190472366 + L1M4 LINE L1 2758 3422 -2724 527 245 51 69 chr1 91721339 91721555 -190472109 + MER58C DNA MER1_type 4 215 0 637 72 0 0 chr1 91721693 91721776 -190471888 - L1PA7 LINE L1 -683 5472 5390 * 5138 64 28 1 chr1 91721749 91722424 -190471240 + L1PA7 LINE L1 5447 6139 -15 213 39 0 0 chr1 91722431 91722457 -190471207 + (TAA)n Simple_repeat Simple_repeat 2 27 0 385 306 126 39 chr1 91722734 91723315 -190470349 - L1MC/D LINE L1 -765 5641 5157 772 317 63 24 chr1 91723335 91724033 -190469631 - L1MC/D LINE L1 -1299 5107 4383 2129 107 0 0 chr1 91724218 91724516 -190469148 - AluSx SINE Alu -14 298 1 701 313 111 58 chr1 91724532 91725435 -190468229 - L1MC/D LINE L1 -2281 4125 3175 234 133 0 0 chr1 91725605 91725650 -190468014 - LTR66 LTR ERVL -171 439 395 * 260 89 0 0 chr1 91725615 91725660 -190468004 + LTR66 LTR ERVL 394 438 -172 1735 146 8 0 chr1 91725679 91725947 -190467717 - AluSx SINE Alu -34 278 9 449 307 70 42 chr1 91725982 91726295 -190467369 - L1MC/D LINE L1 -3553 2853 2532 260 27 27 0 chr1 91726337 91726374 -190467290 + (CA)n Simple_repeat Simple_repeat 2 39 0 313 230 75 19 chr1 91726486 91726508 -190467156 - L1MC/D LINE L1 -4987 1422 1403 5039 121 55 9 chr1 91726508 91728031 -190465633 + L1PA13 LINE L1 4597 6159 -4 313 230 75 19 chr1 91728031 91728169 -190465495 - L1MC/D LINE L1 -5006 1403 1253 1227 220 3 24 chr1 91728613 91728948 -190464716 + AluJb SINE Alu 5 312 0 270 293 98 116 chr1 91731176 91731276 -190462388 - L2 LINE L2 -5 3308 3208 2139 107 7 10 chr1 91731276 91731585 -190462079 - AluSc SINE Alu -1 308 1 270 293 98 116 chr1 91731585 91731613 -190462051 - L2 LINE L2 -105 3208 3181 1080 200 23 9 chr1 91731613 91731828 -190461836 - MER20 DNA MER1_type -1 218 1 270 293 98 116 chr1 91731828 91732104 -190461560 - L2 LINE L2 -132 3181 2910 200 35 35 0 chr1 91733156 91733185 -190460479 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1940 122 0 3 chr1 91733187 91733474 -190460190 - AluSx SINE Alu -26 286 1 392 296 130 0 chr1 91733859 91733974 -190459690 - L2 LINE L2 0 3272 3143 242 276 166 28 chr1 91733983 91734128 -190459536 - L2 LINE L2 0 3313 3149 386 261 139 9 chr1 91734403 91734518 -190459146 + L2 LINE L2 3143 3272 0 202 356 81 16 chr1 91734561 91734808 -190458856 - L2 LINE L2 -1477 1837 1575 180 158 0 0 chr1 91734847 91734885 -190458779 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 3590 120 2 0 chr1 91734988 91735520 -190458144 + L1PA14 LINE L1 5625 6157 -4 1391 216 84 24 chr1 91735876 91736246 -190457418 + MLT1C LTR MaLR 68 459 -8 21 0 0 0 chr1 91736315 91736336 -190457328 + AT_rich Low_complexity Low_complexity 1 21 0 416 307 25 8 chr1 91737527 91737692 -190455972 - MIR3 SINE MIR -34 174 3 232 302 0 0 chr1 91738969 91739032 -190454632 + L2 LINE L2 3210 3272 0 411 272 99 30 chr1 91739605 91739807 -190453857 - MLT1L LTR MaLR -2 613 398 26 64 0 0 chr1 91740773 91740820 -190452844 + AT_rich Low_complexity Low_complexity 1 47 0 1930 65 0 12 chr1 91740995 91741265 -190452399 + AluY SINE Alu 38 304 0 859 294 110 33 chr1 91741273 91741728 -190451936 + MLT1H1 LTR MaLR 51 540 -15 236 305 232 0 chr1 91742113 91742264 -190451400 - L2 LINE L2 -975 2339 2154 1266 218 156 33 chr1 91743423 91743873 -190449791 + MLT1D LTR MaLR 1 505 0 354 388 104 17 chr1 91743898 91744243 -190449421 + L2 LINE L2 2603 2977 -337 244 311 22 22 chr1 91744777 91744867 -190448797 + MLT1K LTR MaLR 9 98 -490 2428 163 29 96 chr1 91744930 91744976 -190448688 - MLT2B3 LTR ERVL 0 554 506 411 73 0 0 chr1 91744976 91745031 -190448633 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2428 163 29 96 chr1 91745031 91745578 -190448086 - MLT2B3 LTR ERVL -48 506 1 6642 104 14 4 chr1 91746089 91747093 -190446571 - L1PA8 LINE L1 -1134 5012 3999 5849 110 24 5 chr1 91747097 91747186 -190446478 + L1PA8 LINE L1 5024 5110 -1062 2216 135 0 0 chr1 91747186 91747497 -190446167 + AluSx SINE Alu 1 311 -1 5849 110 24 5 chr1 91747497 91748550 -190445114 + L1PA8 LINE L1 5110 6161 -11 25 0 0 0 chr1 91748550 91748575 -190445089 + AT_rich Low_complexity Low_complexity 1 25 0 378 250 9 65 chr1 91749403 91749511 -190444153 + MIR SINE MIR 82 183 -79 2039 89 0 70 chr1 91749990 91750343 -190443321 - AluSx SINE Alu 0 332 1 28 29 0 0 chr1 91750782 91750817 -190442847 + AT_rich Low_complexity Low_complexity 1 35 0 180 262 103 79 chr1 91751182 91751308 -190442356 - L2 LINE L2 0 3313 3185 599 315 122 22 chr1 91752313 91752716 -190440948 + L3 LINE CR1 963 1405 -172 670 324 95 9 chr1 91753322 91753637 -190440027 - LTR16A LTR ERVL 0 450 109 492 263 36 0 chr1 91753818 91753955 -190439709 - MIR SINE MIR -35 227 86 1510 237 6 3 chr1 91754485 91754797 -190438867 - LTR16C LTR ERVL 0 491 179 1388 284 42 13 chr1 91755900 91756348 -190437316 - LTR16B LTR ERVL -2 462 2 650 270 107 30 chr1 91756349 91756619 -190437045 + MLT1J1 LTR MaLR 31 321 -125 412 219 37 0 chr1 91757305 91757387 -190436277 - L2 LINE L2 -4 3309 3225 226 248 124 39 chr1 91759194 91759323 -190434341 - LTR16C LTR ERVL -8 483 344 1281 166 151 11 chr1 91759435 91759518 -190434146 - MSTA LTR MaLR -123 305 235 198 0 0 0 chr1 91759518 91759540 -190434124 + (GA)n Simple_repeat Simple_repeat 1 22 0 1281 166 151 11 chr1 91759540 91759721 -190433943 - MSTA LTR MaLR -193 235 4 1263 180 9 5 chr1 91759721 91759943 -190433721 - AluJo SINE Alu -41 271 49 186 325 69 25 chr1 91760868 91761028 -190432636 + MIR SINE MIR 84 250 -12 270 331 65 0 chr1 91761176 91761300 -190432364 + MIR SINE MIR 94 225 -37 302 372 22 22 chr1 91762167 91762350 -190431314 - MIR SINE MIR -50 212 30 21 0 0 0 chr1 91762407 91762428 -190431236 + AT_rich Low_complexity Low_complexity 1 21 0 212 0 36 0 chr1 91762663 91762691 -190430973 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 339 78 0 0 chr1 91763213 91763264 -190430400 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1791 197 68 43 chr1 91763298 91763856 -190429808 - MER69 DNA AcHobo 0 2526 1955 1120 243 92 39 chr1 91763865 91764301 -190429363 - MER69 DNA AcHobo -2021 505 47 225 337 65 0 chr1 91767042 91767134 -190426530 + MLT1J1 LTR MaLR 277 374 -168 * 286 325 9 26 chr1 91767110 91767224 -190426440 + MLT1H LTR MaLR 373 484 -65 258 324 78 78 chr1 91768370 91768626 -190425038 + MIR SINE MIR 2 257 -5 414 301 51 20 chr1 91768923 91769119 -190424545 - MIR SINE MIR -3 259 58 306 340 59 44 chr1 91769464 91769667 -190423997 - MIR3 SINE MIR 0 208 3 921 208 98 76 chr1 91769914 91770270 -190423394 - MLT1J1 LTR MaLR -62 384 21 327 332 16 4 chr1 91773238 91773381 -190420283 - MIR SINE MIR -63 145 38 240 333 67 17 chr1 91775182 91775302 -190418362 - MIR SINE MIR -127 135 10 208 290 0 0 chr1 91775308 91775370 -190418294 + (ATG)n Simple_repeat Simple_repeat 2 63 0 236 290 11 32 chr1 91775370 91775463 -190418201 - MIR SINE MIR -13 249 159 32 57 0 0 chr1 91776258 91776311 -190417353 + AT_rich Low_complexity Low_complexity 1 53 0 379 250 57 32 chr1 91827623 91827747 -190365917 + MIR SINE MIR 66 192 -70 186 191 0 0 chr1 91827938 91827985 -190365679 + (TCTCTG)n Simple_repeat Simple_repeat 4 50 0 1382 206 60 51 chr1 91828772 91828852 -190364812 + MLT1A1 LTR MaLR 6 84 -281 991 54 78 0 chr1 91828852 91828981 -190364683 + MER85 DNA T2_type 1 139 0 1382 206 60 51 chr1 91828981 91829250 -190364414 + MLT1A1 LTR MaLR 84 358 -7 2061 124 26 0 chr1 91832023 91832371 -190361293 - L1MA8 LINE L1 -10 6281 5925 2081 110 0 0 chr1 91832679 91832961 -190360703 - AluSc SINE Alu -27 282 1 198 191 0 0 chr1 91835607 91835649 -190358015 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 29 0 0 0 chr1 91838416 91838445 -190355219 + AT_rich Low_complexity Low_complexity 1 29 0 240 283 57 38 chr1 91838538 91838644 -190355020 - L2 LINE L2 -29 3243 3136 1845 169 0 3 chr1 91839311 91839613 -190354051 - AluJb SINE Alu -11 301 1 2903 6 0 0 chr1 91840818 91841136 -190352528 - AluYb8 SINE Alu 0 318 1 3649 188 51 28 chr1 91841259 91842757 -190350907 - MER52A LTR ERV1 0 1755 1 822 118 8 0 chr1 91843002 91843129 -190350535 + L1MA3 LINE L1 6178 6305 0 238 343 14 0 chr1 91843946 91844019 -190349645 - L2 LINE L2 -6 3307 3234 21 36 0 0 chr1 91844077 91844105 -190349559 + AT_rich Low_complexity Low_complexity 1 28 0 218 81 27 0 chr1 91844773 91844810 -190348854 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 78 0 0 chr1 91845217 91845268 -190348396 + AT_rich Low_complexity Low_complexity 1 51 0 222 260 96 0 chr1 91845384 91845457 -190348207 + MIR SINE MIR 65 144 -118 22 0 0 0 chr1 91845518 91845540 -190348124 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr1 91846448 91846478 -190347186 + (CA)n Simple_repeat Simple_repeat 1 30 0 2037 59 0 2 chr1 91847564 91847993 -190345671 + L1PA5 LINE L1 5636 6151 -3 23 0 0 0 chr1 91848465 91848488 -190345176 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr1 91849110 91849140 -190344524 + (CA)n Simple_repeat Simple_repeat 2 31 0 21 95 0 0 chr1 91849150 91849213 -190344451 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr1 91850135 91850170 -190343494 + AT_rich Low_complexity Low_complexity 1 35 0 210 158 0 0 chr1 91851646 91851684 -190341980 + A-rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr1 91853078 91853103 -190340561 + AT_rich Low_complexity Low_complexity 1 25 0 294 143 0 0 chr1 91853182 91853231 -190340433 + (CA)n Simple_repeat Simple_repeat 2 50 0 334 343 21 0 chr1 91853689 91853832 -190339832 - MIR SINE MIR -7 255 110 1211 209 42 59 chr1 91854617 91854929 -190338735 + AluJo SINE Alu 2 308 0 1778 33 5 0 chr1 91855300 91855512 -190338152 + AluY SINE Alu 93 305 -6 315 0 0 0 chr1 91855559 91855594 -190338070 + (TA)n Simple_repeat Simple_repeat 1 35 0 243 173 0 0 chr1 91857726 91857778 -190335886 + CT-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr1 91859602 91859623 -190334041 + AT_rich Low_complexity Low_complexity 1 21 0 635 187 142 8 chr1 91859656 91859790 -190333874 - L1MC1 LINE L1 0 6333 6182 21 0 0 0 chr1 91862113 91862134 -190331530 + AT_rich Low_complexity Low_complexity 1 21 0 257 333 6 68 chr1 91863157 91863319 -190330345 - MER91A DNA MER1_type -10 186 35 1468 82 24 0 chr1 91863599 91863807 -190329857 - L1PA7 LINE L1 -799 5347 5135 6240 57 4 0 chr1 91863807 91864589 -190329075 + L1PA7 LINE L1 5361 6152 -2 3355 67 0 7 chr1 91864716 91865167 -190328497 + LTR7 LTR ERV1 1 448 -2 19719 91 55 43 chr1 91865169 91868422 -190325242 + HERVH LTR ERV1 1 3290 -4423 3281 119 0 6 chr1 91868412 91868917 -190324747 + HERVH LTR ERV1 3492 3993 -3720 * 4170 149 0 19 chr1 91868919 91869591 -190324073 + HERVH LTR ERV1 4488 5146 -2567 1376 120 23 9 chr1 91869595 91869812 -190323852 + HERVH LTR ERV1 5600 5819 -1894 * 2515 77 45 13 chr1 91869810 91870188 -190323476 + HERVH LTR ERV1 7322 7711 -2 3329 73 0 7 chr1 91870190 91870641 -190323023 + LTR7 LTR ERV1 1 448 -2 282 364 40 0 chr1 91870649 91870748 -190322916 - MIR SINE MIR -66 142 40 183 167 0 0 chr1 91871027 91871069 -190322595 + (TG)n Simple_repeat Simple_repeat 1 42 0 571 196 92 18 chr1 91871222 91871385 -190322279 + 7SK RNA RNA 1 175 -18 245 77 26 0 chr1 91871407 91871446 -190322218 + 7SK RNA RNA 152 191 -2 207 0 0 0 chr1 91871446 91871469 -190322195 + (A)n Simple_repeat Simple_repeat 1 23 0 28 0 0 0 chr1 91871786 91871814 -190321850 + AT_rich Low_complexity Low_complexity 1 28 0 859 267 43 26 chr1 91873272 91873504 -190320160 - MIR SINE MIR 0 262 27 181 256 70 0 chr1 91875375 91875418 -190318246 + MER5A DNA MER1_type 13 58 -131 2522 118 3 0 chr1 91875479 91875842 -190317822 - THE1B LTR MaLR 0 364 1 1333 197 12 0 chr1 91876291 91876545 -190317119 - AluJb SINE Alu -55 257 1 361 335 57 6 chr1 91876700 91876858 -190316806 - MIR SINE MIR -65 197 32 814 211 6 17 chr1 91877601 91877776 -190315888 + FAM SINE Alu 1 173 -2 1082 283 112 36 chr1 91878091 91878959 -190314705 + L2 LINE L2 2364 3313 0 28 71 0 0 chr1 91879687 91879743 -190313921 + AT_rich Low_complexity Low_complexity 1 56 0 228 179 0 0 chr1 91879743 91879782 -190313882 - MIR SINE MIR -27 235 197 896 267 108 38 chr1 91879789 91880143 -190313521 + L2 LINE L2 2569 2897 -416 2241 98 0 9 chr1 91880143 91880458 -190313206 - AluSx SINE Alu 0 312 1 896 267 108 38 chr1 91880458 91880757 -190312907 + L2 LINE L2 2897 3270 -43 2803 142 6 2 chr1 91880757 91881241 -190312423 + L1MC2 LINE L1 5376 5869 -308 246 200 30 60 chr1 91881234 91881293 -190312371 - L1MCa LINE L1 -4362 2064 2008 * 2143 168 36 36 chr1 91881293 91881764 -190311900 + L1MC2 LINE L1 5866 6336 -8 246 200 30 60 chr1 91881764 91881804 -190311860 - L1MCa LINE L1 -4418 2008 1968 510 295 32 16 chr1 91881808 91881998 -190311666 - MIR SINE MIR -64 198 6 2026 115 11 0 chr1 91882063 91882369 -190311295 + AluSx SINE Alu 5 313 0 180 0 0 0 chr1 91883507 91883527 -190310137 + (A)n Simple_repeat Simple_repeat 1 20 0 249 33 0 0 chr1 91883914 91883944 -190309720 + (TA)n Simple_repeat Simple_repeat 2 31 0 315 0 0 0 chr1 91883946 91883981 -190309683 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr1 91885767 91885788 -190307876 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 91887294 91887315 -190306349 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr1 91887550 91887598 -190306066 + AT_rich Low_complexity Low_complexity 1 48 0 423 231 251 10 chr1 91888326 91888512 -190305152 + MIR SINE MIR 21 262 0 204 211 0 39 chr1 91890079 91890131 -190303533 + (TATG)n Simple_repeat Simple_repeat 2 51 0 282 91 91 136 chr1 91891234 91891300 -190302364 - LTR29 LTR ERV1 -78 544 482 1735 162 35 0 chr1 91891392 91891682 -190301982 + AluJb SINE Alu 1 300 -12 272 271 90 33 chr1 91892924 91893046 -190300618 + MIR SINE MIR 134 262 0 21 0 0 0 chr1 91894569 91894590 -190299074 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr1 91896396 91896429 -190297235 + (TG)n Simple_repeat Simple_repeat 2 34 0 180 77 0 0 chr1 91897772 91897798 -190295866 + (TG)n Simple_repeat Simple_repeat 2 27 0 258 252 69 84 chr1 91897844 91897975 -190295689 - MLT1A1-int LTR MaLR -349 1022 894 268 250 0 12 chr1 91898030 91898110 -190295554 - MLT1A1-int LTR MaLR -968 767 689 3128 205 65 10 chr1 91898241 91898650 -190295014 - MLT1A1-int LTR MaLR -642 729 265 2089 119 7 7 chr1 91898650 91898944 -190294720 - AluSx SINE Alu -18 294 1 3128 205 65 10 chr1 91898944 91899223 -190294441 - MLT1A1-int LTR MaLR -1106 265 3 1109 217 16 110 chr1 91899223 91899605 -190294059 - MLT1A1 LTR MaLR -2 363 18 24 32 0 0 chr1 91900089 91900120 -190293544 + AT_rich Low_complexity Low_complexity 1 31 0 187 169 0 51 chr1 91900301 91900360 -190293304 + CT-rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr1 91900484 91900506 -190293158 + AT_rich Low_complexity Low_complexity 1 22 0 398 183 108 21 chr1 91900866 91900959 -190292705 + MLT1F1 LTR MaLR 133 233 -334 27 0 0 0 chr1 91900981 91901008 -190292656 + AT_rich Low_complexity Low_complexity 1 27 0 1694 207 22 39 chr1 91901231 91901472 -190292192 + MER63C DNA MER1_type 244 477 -583 2300 78 37 0 chr1 91901472 91901768 -190291896 - AluSp SINE Alu -6 307 1 1694 207 22 39 chr1 91901768 91901932 -190291732 + MER63C DNA MER1_type 477 642 -288 1010 116 7 13 chr1 91901933 91902088 -190291576 + AluSg/x SINE Alu 140 293 -19 818 209 10 111 chr1 91902221 91902662 -190291002 + MLT1A2 LTR MaLR 1 367 -7 2082 147 0 3 chr1 91902775 91903088 -190290576 + AluSx SINE Alu 1 312 0 340 359 52 21 chr1 91903278 91903470 -190290194 + MIR SINE MIR 16 213 -49 261 356 109 43 chr1 91906073 91906402 -190287262 - L2 LINE L2 0 3272 2922 207 0 0 0 chr1 91906561 91906584 -190287080 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 261 234 104 26 chr1 91906651 91906728 -190286936 - L2 LINE L2 -36 3236 3154 492 337 70 41 chr1 91906806 91907049 -190286615 + MIR SINE MIR 9 258 -4 360 309 110 15 chr1 91907316 91907452 -190286212 + MIR SINE MIR 5 153 -109 1823 155 0 0 chr1 91907764 91908084 -190285580 - AluSx SINE Alu 0 320 1 1958 217 87 84 chr1 91908627 91909449 -190284215 - LTR1B LTR ERV1 0 1020 1 219 103 0 0 chr1 91910291 91910330 -190283334 + (T)n Simple_repeat Simple_repeat 1 39 0 194 315 127 51 chr1 91910747 91910944 -190282720 + MIR SINE MIR 1 212 -50 188 286 125 0 chr1 91911046 91911102 -190282562 + MIR SINE MIR 49 111 -151 468 308 38 0 chr1 91911901 91912034 -190281630 - MIR SINE MIR -122 140 3 505 218 109 0 chr1 91912054 91912164 -190281500 - MLT1A1 LTR MaLR 0 365 244 2041 122 0 7 chr1 91912449 91912735 -190280929 + AluSg SINE Alu 1 284 -26 210 105 0 0 chr1 91912735 91912773 -190280891 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 416 298 7 53 chr1 91913032 91913183 -190280481 - MIR3 SINE MIR -36 172 29 363 289 33 41 chr1 91915071 91915192 -190278472 - L2 LINE L2 -4 3268 3149 311 310 65 84 chr1 91916693 91917061 -190276603 + MLT1J LTR MaLR 1 361 -150 284 290 26 58 chr1 91920337 91920492 -190273172 + MER117 DNA MER1_type 1 150 -47 387 355 112 17 chr1 91920772 91921059 -190272605 - L3 LINE CR1 -9 1568 1255 312 313 167 16 chr1 91921080 91921147 -190272517 + L2 LINE L2 2318 2374 -940 1952 155 0 0 chr1 91921147 91921438 -190272226 + AluSx SINE Alu 1 291 -21 312 313 167 16 chr1 91921438 91921562 -190272102 + L2 LINE L2 2374 2538 -776 55 29 0 0 chr1 91921567 91921636 -190272028 + AT_rich Low_complexity Low_complexity 1 69 0 2003 150 0 17 chr1 91921642 91921942 -190271722 - AluJb SINE Alu -17 295 1 376 310 79 79 chr1 91921944 91922444 -190271220 + L2 LINE L2 2530 3055 -217 1465 217 6 41 chr1 91922611 91922929 -190270735 + AluJo SINE Alu 1 307 -5 2006 151 0 0 chr1 91923006 91923305 -190270359 + AluSx SINE Alu 1 299 -13 874 333 64 19 chr1 91923346 91923908 -190269756 - L3 LINE CR1 -333 1244 601 344 273 23 0 chr1 91923960 91924048 -190269616 - L1MC4 LINE L1 -1339 6703 6614 337 273 23 0 chr1 91923974 91924062 -190269602 + L1MC4 LINE L1 6614 6703 -1339 * 23 78 0 0 chr1 91924125 91924176 -190269488 + AT_rich Low_complexity Low_complexity 1 51 0 12921 126 35 26 chr1 91924229 91926388 -190267276 + Tigger1 DNA MER2_type 23 2199 -219 2580 47 6 22 chr1 91926917 91927235 -190266429 + AluSp SINE Alu 1 313 0 23 54 0 0 chr1 91927442 91927479 -190266185 + AT_rich Low_complexity Low_complexity 1 37 0 500 246 71 71 chr1 91927576 91927787 -190265877 - MIR SINE MIR 0 262 52 292 330 128 52 chr1 91928568 91928874 -190264790 - L2 LINE L2 -1 3271 2943 891 200 36 45 chr1 91928919 91929139 -190264525 - MER20 DNA MER1_type -1 218 1 210 118 0 0 chr1 91930007 91930041 -190263623 + (T)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr1 91930641 91930676 -190262988 + AT_rich Low_complexity Low_complexity 1 35 0 207 346 149 0 chr1 91933100 91933207 -190260457 - MIR SINE MIR -40 222 100 605 247 76 6 chr1 91936707 91936865 -190256799 + MIR SINE MIR 40 208 -54 354 272 221 15 chr1 91941781 91941976 -190251688 + MIR SINE MIR 28 262 0 21 36 0 0 chr1 91943600 91943628 -190250036 + AT_rich Low_complexity Low_complexity 1 28 0 251 344 74 37 chr1 91944266 91944510 -190249154 + LTR16B LTR ERVL 121 373 -91 2794 10 0 3 chr1 91945385 91945695 -190247969 + AluY SINE Alu 1 309 -2 29 28 0 0 chr1 91945873 91945909 -190247755 + AT_rich Low_complexity Low_complexity 1 36 0 240 338 15 0 chr1 91946170 91946238 -190247426 - L2 LINE L2 -61 3211 3143 871 249 63 6 chr1 91946295 91946519 -190247145 + MLT1H LTR MaLR 8 319 -230 740 290 73 36 chr1 91946953 91947256 -190246408 + L2 LINE L2 2431 2744 -570 973 264 55 62 chr1 91947256 91947726 -190245938 + MLT1C LTR MaLR 1 467 0 932 259 49 73 chr1 91947727 91948280 -190245384 + L2 LINE L2 2741 3277 -36 281 26 26 0 chr1 91948933 91948971 -190244693 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 397 104 26 0 chr1 91950162 91950239 -190243425 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 827 321 102 56 chr1 91950317 91951109 -190242555 - L2 LINE L2 -208 3064 2238 270 258 76 102 chr1 91951332 91951557 -190242107 + L2 LINE L2 3076 3294 -19 772 339 61 0 chr1 91952610 91953043 -190240621 + L2 LINE L2 2688 3156 -157 2307 132 31 14 chr1 91955726 91956083 -190237581 + THE1B LTR MaLR 1 363 -1 237 352 139 17 chr1 91956797 91957027 -190236637 + MIR SINE MIR 5 262 0 24 0 0 0 chr1 91959420 91959444 -190234220 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 91959552 91959573 -190234091 + AT_rich Low_complexity Low_complexity 1 21 0 283 235 0 0 chr1 91959678 91959729 -190233935 - Tigger5 DNA MER2_type 0 2323 2273 1904 129 0 55 chr1 91960055 91960365 -190233299 - AluJb SINE Alu -11 301 9 1022 189 204 0 chr1 91960385 91960670 -190232994 - L1MC3 LINE L1 0 7785 7443 606 334 88 14 chr1 91960676 91961069 -190232595 - L2 LINE L2 -164 3149 2729 1678 174 10 23 chr1 91961086 91961396 -190232268 - AluJo SINE Alu -3 309 4 384 152 0 0 chr1 91961411 91961477 -190232187 + (CA)n Simple_repeat Simple_repeat 2 67 0 311 294 0 0 chr1 91961478 91961570 -190232094 - L1MC4 LINE L1 -1340 6702 6611 1999 140 7 0 chr1 91961602 91961888 -190231776 - AluSx SINE Alu -24 288 1 23 33 0 0 chr1 91961937 91961967 -190231697 + AT_rich Low_complexity Low_complexity 1 30 0 204 324 99 35 chr1 91962005 91962147 -190231517 + L2 LINE L2 2900 3050 -222 201 302 79 0 chr1 91962736 91962799 -190230865 + L2 LINE L2 3196 3263 -9 181 384 60 20 chr1 91962791 91962942 -190230722 - MIR3 SINE MIR -51 157 1 * 539 222 111 0 chr1 91963087 91963204 -190230460 + FLAM_C SINE Alu 1 130 -3 183 100 0 0 chr1 91963227 91963257 -190230407 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 348 300 165 29 chr1 91963660 91963830 -190229834 - MIR SINE MIR -50 212 20 467 301 122 52 chr1 91964502 91964788 -190228876 - L2 LINE L2 0 3313 3008 851 298 43 3 chr1 91965206 91965505 -190228159 + LTR16A LTR ERVL 135 445 -5 748 317 61 38 chr1 91965510 91965770 -190227894 + HERV16 LTR ERVL 1 253 -4743 1860 153 24 7 chr1 91965770 91966057 -190227607 + AluJb SINE Alu 2 293 -19 748 317 61 38 chr1 91966057 91966413 -190227251 + HERV16 LTR ERVL 253 663 -4333 1018 312 50 17 chr1 91967121 91967541 -190226123 + HERV16 LTR ERVL 2134 2567 -2429 1065 298 39 11 chr1 91967615 91967971 -190225693 + HERV16 LTR ERVL 2658 3023 -1973 2068 100 52 0 chr1 91967973 91968262 -190225402 + AluSp SINE Alu 1 304 -9 486 332 4 39 chr1 91968571 91968803 -190224861 + LTR16A LTR ERVL 118 341 -109 1470 182 144 9 chr1 91968831 91969150 -190224514 + MLT1A1 LTR MaLR 4 365 0 441 0 0 0 chr1 91969674 91969723 -190223941 + (CA)n Simple_repeat Simple_repeat 2 50 0 1543 178 9 51 chr1 91971188 91971503 -190222161 - AluJo SINE Alu -10 302 1 221 53 53 0 chr1 91972577 91972615 -190221049 + T-rich Low_complexity Low_complexity 3 42 0 275 343 49 0 chr1 92023675 92023777 -190169887 + L2 LINE L2 3121 3227 -45 254 170 21 0 chr1 92023799 92023846 -190169818 - MARNA DNA Mariner -375 211 164 1589 171 29 44 chr1 92024402 92024717 -190168947 + AluJo SINE Alu 1 310 -2 2208 110 0 0 chr1 92024792 92025083 -190168581 + AluSx SINE Alu 1 291 -21 7356 155 43 36 chr1 92025379 92025847 -190167817 + L1M4c LINE L1 314 777 -5607 1513 199 10 30 chr1 92025847 92026149 -190167515 + AluJb SINE Alu 1 296 -16 7356 155 43 36 chr1 92026149 92026382 -190167282 + L1M4c LINE L1 777 1007 -5377 2175 116 3 13 chr1 92026382 92026692 -190166972 + AluSx SINE Alu 1 307 -5 7356 155 43 36 chr1 92026692 92027556 -190166108 + L1M4c LINE L1 1007 1894 -4490 2250 122 0 0 chr1 92027556 92027859 -190165805 - AluSq SINE Alu -9 304 2 7356 155 43 36 chr1 92027859 92027887 -190165777 + L1M4c LINE L1 1894 1920 -4464 1222 262 61 15 chr1 92027887 92028345 -190165319 + L1ME3A LINE L1 5297 5775 -395 717 212 128 6 chr1 92028367 92028546 -190165118 - MER20 DNA MER1_type -17 202 2 737 276 101 12 chr1 92028553 92028879 -190164785 + L1ME3A LINE L1 5808 6162 -8 282 286 48 48 chr1 92029369 92029516 -190164148 + MLT1J LTR MaLR 307 453 -58 413 373 17 0 chr1 92031969 92032146 -190161518 - MIR3 SINE MIR -1 207 28 705 301 48 5 chr1 92035094 92035303 -190158361 + MIR SINE MIR 45 262 0 955 71 0 0 chr1 92035435 92035547 -190158117 + AluY SINE Alu 9 120 -191 180 0 0 0 chr1 92035547 92035567 -190158097 + (TAA)n Simple_repeat Simple_repeat 2 21 0 200 188 42 0 chr1 92035778 92035826 -190157838 + (TA)n Simple_repeat Simple_repeat 2 51 0 233 200 33 0 chr1 92037383 92037443 -190156221 + (TA)n Simple_repeat Simple_repeat 1 62 0 3249 177 31 36 chr1 92037617 92038357 -190155307 + L1MB3 LINE L1 5446 6181 -2 393 58 0 0 chr1 92039284 92039336 -190154328 + (CAG)n Simple_repeat Simple_repeat 1 52 0 180 77 0 0 chr1 92040871 92040897 -190152767 + (CAG)n Simple_repeat Simple_repeat 3 28 0 291 113 0 0 chr1 92041602 92041655 -190152009 + (CA)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr1 92042166 92042189 -190151475 + (A)n Simple_repeat Simple_repeat 1 23 0 1829 157 0 3 chr1 92042850 92043180 -190150484 + AluJo SINE Alu 1 329 0 279 286 0 0 chr1 92043207 92043284 -190150380 - MER103 DNA DNA -81 85 9 549 239 105 74 chr1 92043311 92043596 -190150068 - L2 LINE L2 0 3313 3020 1994 197 63 20 chr1 92044283 92044790 -190148874 - MER45B DNA AcHobo -1 1039 511 1499 235 47 0 chr1 92044784 92045125 -190148539 - MER45B DNA AcHobo -683 357 1 * 24 0 0 0 chr1 92047417 92047441 -190146223 + AT_rich Low_complexity Low_complexity 1 24 0 704 209 0 8 chr1 92047608 92047742 -190145922 + FLAM_A SINE Alu 1 133 0 267 79 0 0 chr1 92047749 92047787 -190145877 + (CA)n Simple_repeat Simple_repeat 1 38 0 242 280 116 11 chr1 92051974 92052163 -190141501 - L1ME4a LINE L1 -16 6105 5897 30 59 0 0 chr1 92052354 92052405 -190141259 + AT_rich Low_complexity Low_complexity 1 51 0 245 205 154 0 chr1 92052482 92052560 -190141104 - L1ME4a LINE L1 -456 5665 5576 248 368 30 8 chr1 92053094 92053227 -190140437 + MIR SINE MIR 1 136 -126 2261 87 30 10 chr1 92053539 92053838 -190139826 + AluSg SINE Alu 1 305 -5 515 237 158 0 chr1 92054923 92055062 -190138602 + MIR SINE MIR 1 161 -101 582 139 0 0 chr1 92055075 92055161 -190138503 + AluSg/x SINE Alu 209 294 -15 336 229 48 0 chr1 92055162 92055245 -190138419 + MIR SINE MIR 155 241 -21 420 301 0 8 chr1 92055654 92055777 -190137887 - MLT1J LTR MaLR -378 133 12 2175 122 0 0 chr1 92056555 92056858 -190136806 - AluSx SINE Alu -9 303 1 472 344 54 40 chr1 92057619 92058046 -190135618 + L1MC4a LINE L1 4388 4820 -1326 742 298 59 60 chr1 92058107 92058375 -190135289 + L1MC4a LINE L1 5307 5574 -2234 1865 156 3 10 chr1 92058375 92058670 -190134994 + AluSg SINE Alu 1 293 -17 2455 62 0 19 chr1 92058672 92058979 -190134685 + AluY SINE Alu 1 301 -10 742 298 59 60 chr1 92058979 92059321 -190134343 + L1MC4a LINE L1 5575 5919 -1889 879 106 13 73 chr1 92059362 92059513 -190134151 + FRAM SINE Alu 20 161 -15 2059 123 7 0 chr1 92059918 92060211 -190133453 - AluSx SINE Alu -17 295 1 593 188 41 77 chr1 92060234 92060404 -190133260 - MER63 DNA MER1_type -46 1642 1 1447 204 16 70 chr1 92061871 92062023 -190131641 + MLT1A1 LTR MaLR 2 161 -204 2239 106 0 0 chr1 92062023 92062316 -190131348 + AluSx SINE Alu 1 293 -19 1447 204 16 70 chr1 92062316 92062379 -190131285 + MLT1A1 LTR MaLR 161 226 -139 2391 79 0 0 chr1 92062379 92062682 -190130982 + AluY SINE Alu 1 303 -8 1447 204 16 70 chr1 92062682 92062848 -190130816 + MLT1A1 LTR MaLR 226 363 -2 2410 74 0 3 chr1 92062958 92063269 -190130395 + AluY SINE Alu 1 310 -1 254 316 13 13 chr1 92063286 92063362 -190130302 + L2 LINE L2 3231 3306 -7 190 350 52 67 chr1 92063404 92063598 -190130066 - L2 LINE L2 -221 3051 2861 373 212 0 0 chr1 92064225 92064291 -190129373 + MER2 DNA MER2_type 280 345 0 297 342 13 19 chr1 92064291 92064446 -190129218 - MIR SINE MIR -105 157 4 21 0 0 0 chr1 92064926 92064947 -190128717 + AT_rich Low_complexity Low_complexity 1 21 0 1883 137 3 10 chr1 92064950 92065242 -190128422 - AluJb SINE Alu -22 290 1 2236 122 0 3 chr1 92065396 92065700 -190127964 + AluSg SINE Alu 1 303 -7 242 289 35 53 chr1 92065992 92066106 -190127558 + L2 LINE L2 3200 3311 -2 399 329 52 0 chr1 92066611 92066760 -190126904 + MIR SINE MIR 33 190 -63 1800 158 0 30 chr1 92067232 92067535 -190126129 + AluJb SINE Alu 7 300 -12 437 0 19 0 chr1 92067536 92067589 -190126075 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 2216 122 0 0 chr1 92067690 92067993 -190125671 + AluSx SINE Alu 1 303 -9 2008 133 0 0 chr1 92068720 92069055 -190124609 - AluSx SINE Alu 0 335 1 21 0 0 0 chr1 92069857 92069878 -190123786 + AT_rich Low_complexity Low_complexity 1 21 0 270 125 0 0 chr1 92069989 92070037 -190123627 + (TG)n Simple_repeat Simple_repeat 1 48 0 333 242 172 35 chr1 92070999 92071226 -190122438 - MER20B DNA MER1_type -486 297 40 648 322 31 25 chr1 92071530 92071816 -190121848 - MLT1J LTR MaLR -77 434 147 351 273 30 61 chr1 92071934 92072066 -190121598 + MIR3 SINE MIR 54 181 -27 397 297 191 45 chr1 92072248 92072819 -190120845 - L2 LINE L2 -9 3304 2568 2276 87 0 23 chr1 92073576 92073886 -190119778 + AluSp SINE Alu 1 303 -10 250 229 10 73 chr1 92074946 92075042 -190118622 + MER103 DNA DNA 76 165 -1 1800 173 24 35 chr1 92075055 92075424 -190118240 + MLT1A1 LTR MaLR 1 365 0 929 315 66 46 chr1 92075442 92076225 -190117439 + L2 LINE L2 2521 3312 -1 243 333 177 14 chr1 92077015 92077156 -190116508 - MIR SINE MIR -50 212 49 2094 107 24 0 chr1 92077196 92077487 -190116177 - AluSx SINE Alu -14 298 1 498 326 80 25 chr1 92077487 92077726 -190115938 - MIR SINE MIR -5 257 6 274 257 121 21 chr1 92079805 92079945 -190113719 - MIR SINE MIR -3 259 106 593 250 88 26 chr1 92080005 92080233 -190113431 + MER112 DNA MER1_type 19 260 0 271 274 74 42 chr1 92081255 92081350 -190112314 + MIR SINE MIR 43 140 -68 275 230 162 0 chr1 92082218 92082292 -190111372 - MIR SINE MIR -65 143 58 346 282 260 0 chr1 92082893 92083074 -190110590 + MIR SINE MIR 23 250 -12 234 128 0 0 chr1 92084514 92084553 -190109111 + (A)n Simple_repeat Simple_repeat 1 39 0 2230 135 0 3 chr1 92087057 92087369 -190106295 - AluSq SINE Alu -2 311 1 963 143 40 23 chr1 92088113 92088288 -190105376 - AluSg/x SINE Alu -6 306 129 23 0 0 0 chr1 92088415 92088438 -190105226 + AT_rich Low_complexity Low_complexity 1 23 0 1677 78 5 14 chr1 92088596 92088813 -190104851 + AluSg SINE Alu 1 215 -95 180 176 0 0 chr1 92088822 92088856 -190104808 + A-rich Low_complexity Low_complexity 1 34 0 1049 71 24 6 chr1 92089193 92089362 -190104302 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 532 297 48 56 chr1 92089695 92089944 -190103720 + L2 LINE L2 3025 3271 -1 305 208 13 26 chr1 92090470 92090547 -190103117 + MIR SINE MIR 184 259 -3 192 290 20 50 chr1 92090971 92091071 -190102593 + MIR SINE MIR 104 200 -62 258 214 18 0 chr1 92091723 92091779 -190101885 + MER91B DNA MER1_type 73 129 -61 418 304 0 10 chr1 92091797 92091899 -190101765 + MER91B DNA MER1_type 90 190 0 840 295 13 9 chr1 92092022 92092246 -190101418 + MIR SINE MIR 1 225 -37 1148 252 28 94 chr1 92092578 92093155 -190100509 + L2 LINE L2 2768 3297 -16 2073 120 3 10 chr1 92093200 92093559 -190100105 - AluSx SINE Alu 0 312 1 30 45 0 0 chr1 92094428 92094472 -190099192 + AT_rich Low_complexity Low_complexity 1 44 0 25 90 0 0 chr1 92094622 92094689 -190098975 + AT_rich Low_complexity Low_complexity 1 67 0 518 323 48 28 chr1 92095659 92095910 -190097754 - MIR SINE MIR -4 258 3 1564 246 77 40 chr1 92096011 92096583 -190097081 - MLT1E LTR MaLR 0 593 1 229 333 131 33 chr1 92096862 92097045 -190096619 + MIR SINE MIR 5 205 -57 23 33 0 0 chr1 92098569 92098599 -190095065 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr1 92098706 92098751 -190094913 + AT_rich Low_complexity Low_complexity 1 45 0 1127 173 35 0 chr1 92098996 92099198 -190094466 - MER3 DNA MER1_type 0 209 1 579 242 86 11 chr1 92101026 92101212 -190092452 - MIR SINE MIR -14 248 49 1564 195 58 125 chr1 92101222 92101386 -190092278 - MLT1F LTR MaLR -2 540 366 1710 197 0 7 chr1 92101386 92101680 -190091984 + AluJo SINE Alu 1 292 -20 1564 195 58 125 chr1 92101680 92102089 -190091575 - MLT1F LTR MaLR -176 366 6 2054 122 0 11 chr1 92102234 92102548 -190091116 - AluSx SINE Alu 0 311 1 777 229 24 0 chr1 92102735 92102901 -190090763 - MER58A DNA MER1_type -18 206 37 1004 118 0 0 chr1 92102902 92103038 -190090626 + AluSq/x SINE Alu 1 136 -177 425 273 27 96 chr1 92103238 92103425 -190090239 - L2 LINE L2 0 3272 3099 653 195 6 25 chr1 92103643 92103802 -190089862 + MER103 DNA DNA 1 156 -10 227 318 9 36 chr1 92104260 92104370 -190089294 + CT-rich Low_complexity Low_complexity 3 109 0 180 0 0 0 chr1 92105151 92105171 -190088493 + (AGGGGG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 92106654 92106675 -190086989 + AT_rich Low_complexity Low_complexity 1 21 0 267 288 55 0 chr1 92106786 92106932 -190086732 - L1MC5 LINE L1 -36 7925 7772 213 214 0 0 chr1 92107374 92107416 -190086248 + CT-rich Low_complexity Low_complexity 4 45 0 375 78 0 0 chr1 92111787 92111838 -190081826 + (CA)n Simple_repeat Simple_repeat 1 51 0 2058 132 3 0 chr1 92111865 92112154 -190081510 + AluSx SINE Alu 1 290 -22 21 57 0 0 chr1 92113101 92113136 -190080528 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 92114347 92114368 -190079296 + AT_rich Low_complexity Low_complexity 1 21 0 239 93 23 0 chr1 92115634 92115677 -190077987 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr1 92115782 92115803 -190077861 + AT_rich Low_complexity Low_complexity 1 21 0 305 367 72 42 chr1 92117151 92117522 -190076142 - L2 LINE L2 -249 3023 2645 582 230 251 48 chr1 92117744 92118074 -190075590 - LTR16A1 LTR ERVL -3 454 58 705 318 74 18 chr1 92118427 92119014 -190074650 - MERVL LTR ERVL -573 5191 4521 667 325 59 16 chr1 92119007 92119431 -190074233 - MERVL LTR ERVL -2730 2755 2314 * 1450 319 92 6 chr1 92119562 92120205 -190073459 - MERVL LTR ERVL -2687 2309 1612 1354 353 70 29 chr1 92120267 92121373 -190072291 - MERVL LTR ERVL -3509 1487 336 1230 241 34 34 chr1 92121386 92121918 -190071746 + MLT1E LTR MaLR 1 593 0 730 198 198 0 chr1 92122087 92122274 -190071390 - MER58A DNA MER1_type 0 224 1 598 165 123 29 chr1 92122424 92122594 -190071070 - LTR16A1 LTR ERVL -9 448 263 265 255 21 21 chr1 92122667 92122761 -190070903 - LTR16A1 LTR ERVL -229 228 135 781 271 47 24 chr1 92123129 92123384 -190070280 + MIR SINE MIR 2 262 0 424 333 56 19 chr1 92124814 92124976 -190068688 - L2 LINE L2 -1 3271 3104 1861 152 9 3 chr1 92125638 92125954 -190067710 - MLT1A1 LTR MaLR 0 365 48 354 208 96 56 chr1 92127331 92127456 -190066208 - MIR SINE MIR -13 249 120 532 157 0 0 chr1 92127513 92127602 -190066062 - Tigger5 DNA MER2_type -4 2319 2231 250 254 0 0 chr1 92127607 92127662 -190066002 - Tigger5 DNA MER2_type -2268 55 1 * 832 304 50 12 chr1 92127662 92128000 -190065664 - LTR16C LTR ERVL -56 435 85 223 288 38 50 chr1 92128070 92128150 -190065514 - MIR SINE MIR -147 115 37 223 186 0 0 chr1 92129163 92129206 -190064458 + L2 LINE L2 3263 3305 -8 21 0 0 0 chr1 92129513 92129534 -190064130 + AT_rich Low_complexity Low_complexity 1 21 0 337 242 121 40 chr1 92129556 92129680 -190063984 - MIR SINE MIR -83 179 46 239 286 48 29 chr1 92130425 92130530 -190063134 - MIR3 SINE MIR -15 193 87 996 123 0 0 chr1 92132032 92132162 -190061502 + AluSq/x SINE Alu 1 130 -183 2140 111 0 0 chr1 92132171 92132468 -190061196 + AluSg1 SINE Alu 5 301 -8 2216 117 3 0 chr1 92132471 92132770 -190060894 + AluSx SINE Alu 1 300 -12 194 150 25 0 chr1 92132918 92132958 -190060706 + CT-rich Low_complexity Low_complexity 1 41 0 207 204 0 0 chr1 92133187 92133236 -190060428 + (TG)n Simple_repeat Simple_repeat 1 49 0 2192 128 0 3 chr1 92133814 92134119 -190059545 - AluSx SINE Alu -8 304 1 380 250 12 0 chr1 92134441 92134521 -190059143 + MER81 DNA DNA 34 114 0 240 86 0 0 chr1 92134868 92134903 -190058761 + (CA)n Simple_repeat Simple_repeat 1 35 0 200 289 0 0 chr1 92134995 92135047 -190058617 + T-rich Low_complexity Low_complexity 2 53 0 327 104 0 0 chr1 92135122 92135170 -190058494 + (TG)n Simple_repeat Simple_repeat 2 49 0 478 399 47 32 chr1 92135640 92135983 -190057681 - L2 LINE L2 -11 3261 2914 402 219 0 73 chr1 92136852 92136975 -190056689 + MER103 DNA DNA 5 118 -48 2037 151 0 3 chr1 92137419 92137717 -190055947 - AluSx SINE Alu -15 297 1 1285 336 48 8 chr1 92138668 92139287 -190054377 - L2 LINE L2 -284 3029 2387 224 355 0 0 chr1 92139647 92139709 -190053955 + MIR SINE MIR 41 102 -106 446 246 14 58 chr1 92139877 92140384 -190053280 + MER5B DNA MER1_type 16 147 -31 1819 141 57 43 chr1 92139946 92140316 -190053348 + THE1C LTR MaLR 1 375 0 373 239 63 69 chr1 92140316 92140410 -190053254 - MER5A DNA MER1_type -85 104 10 823 167 59 4 chr1 92140904 92141095 -190052569 + L1M2 LINE L1 5291 5484 -684 182 253 53 27 chr1 92141184 92141259 -190052405 - L2 LINE L2 -87 3226 3150 * 822 245 79 12 chr1 92141249 92141490 -190052174 + MIR SINE MIR 6 262 0 181 367 92 0 chr1 92142142 92142251 -190051413 - L3 LINE CR1 -859 718 600 1451 162 74 30 chr1 92142932 92143232 -190050432 + AluJb SINE Alu 1 312 0 3720 60 249 0 chr1 92143292 92143843 -190049821 + LTR12 LTR ERV1 1 688 0 1987 157 0 3 chr1 92144854 92145167 -190048497 - AluJb SINE Alu 0 312 1 1866 151 11 54 chr1 92145254 92145605 -190048059 + MER1B DNA MER1_type 1 336 -1 312 27 0 0 chr1 92148045 92148082 -190045582 + (TG)n Simple_repeat Simple_repeat 1 37 0 920 232 54 31 chr1 92148142 92148366 -190045298 + MIR SINE MIR 13 241 -21 249 211 79 44 chr1 92148720 92148834 -190044830 - MER113 DNA MER1_type? -402 119 2 1570 260 93 32 chr1 92149583 92150140 -190043524 + MLT1E LTR MaLR 1 591 -2 2348 75 0 3 chr1 92150622 92150914 -190042750 + AluSc SINE Alu 1 291 -18 845 221 0 12 chr1 92150931 92151094 -190042570 + FRAM SINE Alu 2 162 -14 254 253 48 12 chr1 92151397 92151480 -190042184 - MER5A DNA MER1_type -95 94 9 1499 193 40 71 chr1 92151791 92151957 -190041707 + MLT1C LTR MaLR 1 171 -296 2412 94 0 0 chr1 92151957 92152256 -190041408 - AluSg SINE Alu -11 299 1 1499 193 40 71 chr1 92152256 92152564 -190041100 + MLT1C LTR MaLR 171 460 -7 353 43 0 0 chr1 92152564 92152610 -190041054 - MADE1 DNA Mariner 0 80 35 1887 89 0 4 chr1 92152620 92152868 -190040796 + AluSx SINE Alu 1 247 -65 224 367 0 10 chr1 92153128 92153226 -190040438 + MIR3 SINE MIR 98 194 -14 232 179 45 0 chr1 92153572 92153639 -190040025 + CT-rich Low_complexity Low_complexity 2 71 0 1571 129 117 4 chr1 92154630 92154894 -190038770 - AluSg SINE Alu -16 294 1 183 300 83 0 chr1 92155075 92155135 -190038529 + L2 LINE L2 3239 3303 -10 264 59 0 0 chr1 92155409 92155443 -190038221 + (TTA)n Simple_repeat Simple_repeat 2 35 0 647 244 19 6 chr1 92155783 92155943 -190037721 - MIR SINE MIR 0 262 101 333 274 85 12 chr1 92156346 92156510 -190037154 - MARNA DNA Mariner -155 431 256 332 306 52 8 chr1 92156775 92156909 -190036755 - MIR SINE MIR -6 256 117 297 198 26 69 chr1 92157704 92157820 -190035844 - MER112 DNA MER1_type -6 254 144 287 282 0 35 chr1 92157895 92157980 -190035684 + L2 LINE L2 3232 3313 0 381 238 0 0 chr1 92157983 92158084 -190035580 + (TG)n Simple_repeat Simple_repeat 2 102 0 752 176 0 0 chr1 92158093 92158212 -190035452 - FLAM_C SINE Alu -24 119 1 256 254 16 0 chr1 92158231 92158294 -190035370 - MER112 DNA MER1_type -191 69 6 306 205 36 0 chr1 92158306 92158418 -190035246 + (CATATA)n Simple_repeat Simple_repeat 5 120 0 531 224 61 24 chr1 92158423 92158588 -190035076 - LTR16A1 LTR ERVL 0 457 287 246 299 0 0 chr1 92158682 92158749 -190034915 - L2 LINE L2 0 3313 3247 2030 136 33 0 chr1 92159526 92159828 -190033836 - AluSx SINE Alu 0 312 1 566 239 136 7 chr1 92159864 92160019 -190033645 - MER5B DNA MER1_type -3 175 1 1047 276 80 38 chr1 92160383 92160798 -190032866 - L2 LINE L2 0 3313 2868 2422 55 14 3 chr1 92160798 92161091 -190032573 + AluY SINE Alu 1 296 -15 1047 276 80 38 chr1 92161091 92161258 -190032406 - L2 LINE L2 -445 2868 2709 735 259 97 36 chr1 92161574 92161635 -190032029 + L2 LINE L2 2302 2358 -956 2236 128 0 0 chr1 92161635 92161947 -190031717 + AluSx SINE Alu 1 312 0 735 259 97 36 chr1 92161947 92162163 -190031501 + L2 LINE L2 2358 2596 -718 1144 261 137 0 chr1 92162170 92162542 -190031122 - L2 LINE L2 -972 2342 1920 590 321 112 19 chr1 92162550 92162818 -190030846 + L2 LINE L2 2598 2890 -424 2026 106 43 7 chr1 92162842 92163143 -190030521 - AluSx SINE Alu 0 312 1 891 269 59 34 chr1 92163272 92163629 -190030035 + LTR16C LTR ERVL 99 464 -27 202 286 16 0 chr1 92163659 92163722 -190029942 + L2 LINE L2 2910 2973 -299 1806 188 28 6 chr1 92163753 92164110 -190029554 - MLT1A1 LTR MaLR 0 365 1 186 286 116 18 chr1 92164318 92164430 -190029234 + L2 LINE L2 3189 3311 -2 269 270 0 0 chr1 92164572 92164635 -190029029 + (TATG)n Simple_repeat Simple_repeat 3 65 0 40 37 0 0 chr1 92164637 92164691 -190028973 + AT_rich Low_complexity Low_complexity 1 54 0 234 184 41 82 chr1 92165050 92165148 -190028516 + MER103 DNA DNA 71 164 -2 1998 123 0 27 chr1 92165173 92165465 -190028199 - AluSx SINE Alu -28 284 1 465 265 96 6 chr1 92165606 92165772 -190027892 - MIR SINE MIR -69 193 13 23 0 0 0 chr1 92165895 92165918 -190027746 + AT_rich Low_complexity Low_complexity 1 23 0 364 250 0 0 chr1 92166314 92166398 -190027266 + Tigger3(Golem) DNA MER2_type 2 85 -2944 3446 133 56 12 chr1 92166398 92167124 -190026540 + L1MCa LINE L1 1530 2375 -4051 1289 169 19 5 chr1 92167124 92167337 -190026327 + AluJo SINE Alu 82 297 -15 2041 134 0 3 chr1 92167383 92167688 -190025976 - AluSx SINE Alu -4 308 5 746 216 19 62 chr1 92167701 92167743 -190025921 + L1MCa LINE L1 2524 2566 -3860 756 218 0 0 chr1 92167743 92167876 -190025788 + FLAM_C SINE Alu 1 133 0 746 216 19 62 chr1 92167876 92168092 -190025572 + L1MCa LINE L1 2566 2771 -3655 1658 213 133 11 chr1 92168185 92168621 -190025043 + MER57-int LTR ERV1 6635 7123 -414 1929 163 38 88 chr1 92168654 92168674 -190024990 + LTR54 LTR ERV1 1 20 -490 2097 96 4 0 chr1 92168674 92168994 -190024670 + AluSc SINE Alu 1 321 0 1929 163 38 88 chr1 92168994 92169474 -190024190 + LTR54 LTR ERV1 20 477 -33 7203 214 73 78 chr1 92169482 92170364 -190023300 + L1MCa LINE L1 2758 3643 -2783 1535 118 0 31 chr1 92170364 92170592 -190023072 + AluY SINE Alu 84 304 -7 1248 144 0 0 chr1 92170592 92170766 -190022898 + AluSg/x SINE Alu 132 305 -5 7203 214 73 78 chr1 92170766 92171628 -190022036 + L1MCa LINE L1 3642 4507 -1919 1920 172 13 0 chr1 92171628 92171930 -190021734 - AluJo SINE Alu -6 306 1 7203 214 73 78 chr1 92171930 92172943 -190020721 + L1MCa LINE L1 4507 5676 -750 1413 170 11 19 chr1 92172949 92173214 -190020450 + L1MC1 LINE L1 6071 6333 0 1881 157 3 26 chr1 92173429 92173741 -190019923 + AluJo SINE Alu 1 305 -7 306 273 110 31 chr1 92173950 92174362 -190019302 - L1ME LINE L1 -237 5884 5436 186 253 56 59 chr1 92175111 92175219 -190018445 + MIR SINE MIR 83 188 -62 1456 143 128 57 chr1 92175663 92175999 -190017665 + MER46B DNA MER2_type 1 235 -1 217 315 14 27 chr1 92176604 92176677 -190016987 - MIR3 SINE MIR -52 156 85 422 263 168 6 chr1 92177943 92178122 -190015542 - MIR SINE MIR -6 256 49 195 333 48 0 chr1 92178220 92178304 -190015360 + MIR SINE MIR 103 190 -72 2352 92 0 19 chr1 92178611 92178926 -190014738 + AluSc SINE Alu 1 309 0 206 0 69 0 chr1 92180353 92180382 -190013282 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1189 180 125 23 chr1 92180385 92180641 -190013023 - AluJo SINE Alu -30 282 1 23 33 0 0 chr1 92181037 92181067 -190012597 + AT_rich Low_complexity Low_complexity 1 30 0 687 157 23 69 chr1 92181518 92181735 -190011929 - L1MC5 LINE L1 -440 7521 7315 257 262 32 24 chr1 92181892 92182018 -190011646 - L1ME LINE L1 -367 5799 5673 310 268 31 10 chr1 92182194 92182291 -190011373 + Charlie7 DNA MER1_type 1 99 -2513 248 314 156 49 chr1 92182459 92182560 -190011104 + L2 LINE L2 2290 2379 -935 2098 138 0 28 chr1 92182560 92182879 -190010785 - AluSx SINE Alu -2 310 1 248 314 156 49 chr1 92182879 92183105 -190010559 + L2 LINE L2 2379 2652 -662 292 278 0 93 chr1 92183303 92183411 -190010253 - MIR SINE MIR -8 254 157 370 238 16 66 chr1 92183428 92183550 -190010114 + MIR SINE MIR 26 141 -121 588 86 49 0 chr1 92183580 92183685 -190009979 - AluSg/x SINE Alu 0 304 196 1421 103 0 10 chr1 92183738 92183933 -190009731 - AluY SINE Alu -118 193 1 519 291 0 7 chr1 92183953 92184094 -190009570 - MIR SINE MIR -105 157 18 412 271 64 78 chr1 92184827 92185045 -190008619 - MIR SINE MIR -21 241 27 285 297 33 22 chr1 92185033 92185124 -190008540 + MIR SINE MIR 24 115 -147 * 2032 162 0 0 chr1 92185361 92185663 -190008001 + AluJb SINE Alu 1 302 -10 2096 174 5 11 chr1 92185756 92186123 -190007541 + MLT1A1 LTR MaLR 1 365 0 2147 107 4 0 chr1 92186747 92187028 -190006636 - AluSx SINE Alu -30 282 1 1682 163 0 0 chr1 92187052 92187328 -190006336 - L1PB4 LINE L1 -3 6153 5878 2262 115 0 0 chr1 92187388 92187684 -190005980 - AluSq SINE Alu -16 297 2 2182 134 3 3 chr1 92187686 92187992 -190005672 - AluSx SINE Alu -6 306 1 192 353 151 0 chr1 92189421 92189540 -190004124 - L2 LINE L2 -4 3309 3173 186 333 26 63 chr1 92189794 92189983 -190003681 - MIR SINE MIR -44 218 37 448 269 23 0 chr1 92190298 92190428 -190003236 - MER94 DNA DNA -1 133 1 1907 70 3 70 chr1 92190641 92190879 -190002785 - L1MA1 LINE L1 -3 6299 6047 2209 105 34 0 chr1 92190879 92191174 -190002490 - AluSg SINE Alu -5 305 1 2310 95 0 7 chr1 92191181 92191485 -190002179 - AluSg SINE Alu -8 302 1 1907 70 3 70 chr1 92191485 92191539 -190002125 - L1MA1 LINE L1 -261 6041 6019 1126 158 115 79 chr1 92191622 92191988 -190001676 + LTR48 LTR ERV1 73 451 -336 747 152 51 41 chr1 92192006 92192203 -190001461 + LTR48 LTR ERV1 589 787 0 442 357 35 25 chr1 92193523 92193722 -189999942 - L2 LINE L2 0 3272 3072 24 0 0 0 chr1 92195134 92195158 -189998506 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 92196457 92196486 -189997178 + AT_rich Low_complexity Low_complexity 1 29 0 1858 125 35 14 chr1 92196766 92197053 -189996611 + AluSg SINE Alu 1 293 -17 2281 92 3 25 chr1 92197179 92197495 -189996169 - AluSx SINE Alu -3 309 1 795 179 53 13 chr1 92197905 92198056 -189995608 + FAM SINE Alu 13 169 -16 453 244 204 12 chr1 92198089 92198261 -189995403 - L2 LINE L2 -3 3310 3106 2415 80 0 3 chr1 92198290 92198592 -189995072 + AluY SINE Alu 1 301 -10 1865 156 21 0 chr1 92199352 92199640 -189994024 - AluJb SINE Alu -18 294 1 231 125 25 0 chr1 92199673 92199713 -189993951 - Zaphod DNA AcHobo -13 4018 3978 404 169 0 0 chr1 92199838 92199909 -189993755 - MER115 DNA AcHobo -432 261 191 428 228 129 47 chr1 92200046 92200149 -189993515 - MER5A DNA MER1_type 0 189 63 2304 102 0 0 chr1 92200149 92200442 -189993222 - AluSx SINE Alu -19 293 1 428 228 129 47 chr1 92200442 92200508 -189993156 - MER5A DNA MER1_type -126 63 4 2553 46 0 10 chr1 92202141 92202445 -189991219 - AluY SINE Alu -10 301 1 21 0 0 0 chr1 92202627 92202648 -189991016 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 92202743 92202772 -189990892 + AT_rich Low_complexity Low_complexity 1 29 0 419 330 45 17 chr1 92202833 92203012 -189990652 + MIR SINE MIR 47 230 -32 202 150 25 0 chr1 92203543 92203583 -189990081 + A-rich Low_complexity Low_complexity 2 42 0 2283 114 0 3 chr1 92204201 92204508 -189989156 - AluSg SINE Alu -3 307 2 2234 97 6 28 chr1 92204619 92204938 -189988726 - AluSq SINE Alu -1 312 1 1574 197 38 17 chr1 92204940 92205230 -189988434 - AluJb SINE Alu -16 296 1 1902 82 60 11 chr1 92205308 92205603 -189988061 - AluY SINE Alu 0 308 1 2080 115 20 0 chr1 92205617 92205912 -189987752 - AluSp SINE Alu -12 301 1 188 338 62 25 chr1 92205932 92206012 -189987652 + MIR SINE MIR 41 123 -85 361 383 91 20 chr1 92206184 92206892 -189986772 + L2 LINE L2 2464 3308 -5 297 218 127 55 chr1 92208106 92208216 -189985448 + MIR SINE MIR 117 234 -28 21 0 0 0 chr1 92209331 92209352 -189984312 + AT_rich Low_complexity Low_complexity 1 21 0 296 136 23 0 chr1 92210729 92210773 -189982891 + (TG)n Simple_repeat Simple_repeat 2 46 0 2225 115 0 3 chr1 92211485 92211798 -189981866 + AluSx SINE Alu 1 312 0 14133 191 18 13 chr1 92211937 92212452 -189981212 - L1PB1 LINE L1 -3 6864 6353 2445 70 0 0 chr1 92212452 92212750 -189980914 - AluSg SINE Alu -12 298 1 14133 191 18 13 chr1 92212750 92217733 -189975931 - L1PB1 LINE L1 -514 6353 1360 2062 136 0 10 chr1 92218846 92219141 -189974523 + AluSx SINE Alu 1 292 -20 267 325 32 32 chr1 92219786 92219909 -189973755 - L3b LINE CR1 -70 1513 1391 2330 91 3 19 chr1 92220124 92220432 -189973232 - AluSp SINE Alu -10 303 1 312 315 0 0 chr1 92220491 92220580 -189973084 + L1MC4 LINE L1 6614 6702 -1340 369 204 22 51 chr1 92220583 92220720 -189972944 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 1167 58 7 0 chr1 92220766 92220905 -189972759 + AluSq/x SINE Alu 1 140 -173 252 98 0 49 chr1 92220905 92220966 -189972698 + Alu SINE Alu 247 305 0 403 221 39 78 chr1 92221394 92221548 -189972116 + Charlie8 DNA MER1_type 45 192 -2225 330 230 27 0 chr1 92222500 92222574 -189971090 - L2 LINE L2 0 3313 3238 209 355 0 32 chr1 92222625 92222718 -189970946 - L2 LINE L2 -180 3092 3003 758 225 75 16 chr1 92222902 92223089 -189970575 + MIR SINE MIR 39 236 -26 49 52 0 0 chr1 92223885 92223962 -189969702 + AT_rich Low_complexity Low_complexity 1 77 0 2200 122 0 10 chr1 92224178 92224481 -189969183 + AluSx SINE Alu 1 300 -12 347 317 42 77 chr1 92225022 92225111 -189968553 + L3 LINE CR1 78 169 -1408 2609 51 0 0 chr1 92225111 92225422 -189968242 + AluY SINE Alu 1 311 0 347 317 42 77 chr1 92225422 92225644 -189968020 + L3 LINE CR1 169 378 -1199 479 332 58 13 chr1 92225773 92225999 -189967665 + MIR SINE MIR 13 248 -14 184 292 195 0 chr1 92226137 92226250 -189967414 + L2 LINE L2 3136 3270 -2 * 1081 310 136 30 chr1 92226238 92226909 -189966755 + L3 LINE CR1 693 1434 -143 312 320 30 10 chr1 92230376 92230476 -189963188 - L2 LINE L2 -5 3267 3166 201 39 0 0 chr1 92231278 92231304 -189962360 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 189 0 0 0 chr1 92232063 92232084 -189961580 + (TTG)n Simple_repeat Simple_repeat 3 23 0 224 309 63 32 chr1 92233378 92233504 -189960160 - L2 LINE L2 -5 3308 3179 1876 110 70 15 chr1 92233676 92233970 -189959694 - AluSg1 SINE Alu 0 309 1 371 140 0 0 chr1 92234024 92234081 -189959583 - AluSc SINE Alu -138 161 105 1528 178 42 24 chr1 92234181 92234468 -189959196 + AluJo SINE Alu 3 294 -18 2215 96 33 7 chr1 92234474 92234775 -189958889 + AluSc SINE Alu 1 309 0 21 0 0 0 chr1 92234775 92234796 -189958868 + AT_rich Low_complexity Low_complexity 1 21 0 190 364 133 21 chr1 92234869 92235427 -189958237 - L2 LINE L2 -831 2483 1864 195 42 0 0 chr1 92236190 92236214 -189957450 + (TTG)n Simple_repeat Simple_repeat 1 24 0 218 171 0 0 chr1 92236661 92236696 -189956968 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 154 0 0 chr1 92237180 92237219 -189956445 + (TA)n Simple_repeat Simple_repeat 2 40 0 550 256 11 6 chr1 92237582 92237722 -189955942 - MER104 DNA Tc2 -1718 180 37 479 103 26 0 chr1 92237722 92237800 -189955864 - MADE1 DNA Mariner 0 80 1 550 256 11 6 chr1 92237800 92237835 -189955829 - MER104 DNA Tc2 -1861 37 4 22 0 0 0 chr1 92238118 92238140 -189955524 + AT_rich Low_complexity Low_complexity 1 22 0 602 161 19 68 chr1 92238813 92238891 -189954773 - Charlie1a DNA MER1_type -1306 1455 1388 2067 120 23 10 chr1 92238891 92239191 -189954473 + AluSx SINE Alu 6 309 -3 602 161 19 68 chr1 92239191 92239274 -189954390 - Charlie1a DNA MER1_type -1373 1388 1302 4291 193 20 54 chr1 92239274 92240398 -189953266 - Charlie1a DNA MER1_type -365 1090 5 440 291 50 16 chr1 92241002 92241184 -189952480 - MIR SINE MIR -55 207 20 2227 103 20 3 chr1 92241298 92241600 -189952064 - AluSx SINE Alu -5 307 1 25 0 0 0 chr1 92241613 92241638 -189952026 + AT_rich Low_complexity Low_complexity 1 25 0 210 324 118 0 chr1 92242067 92242169 -189951495 - MIR SINE MIR -11 251 138 362 293 110 18 chr1 92242207 92242371 -189951293 - MIR SINE MIR -82 180 2 2645 107 0 3 chr1 92242393 92242758 -189950906 - THE1B LTR MaLR 0 364 1 422 301 0 0 chr1 92242763 92242886 -189950778 + MER94 DNA DNA 9 131 -3 21 36 0 0 chr1 92243709 92243737 -189949927 + AT_rich Low_complexity Low_complexity 1 28 0 489 320 51 10 chr1 92244747 92244962 -189948702 + MIR SINE MIR 3 225 -37 405 250 139 50 chr1 92245379 92245559 -189948105 + MIR SINE MIR 13 208 -54 2154 72 0 0 chr1 92246588 92246851 -189946813 - AluSc SINE Alu -38 271 9 207 300 111 60 chr1 92248024 92248357 -189945307 - L3 LINE CR1 -288 1289 940 2041 104 47 7 chr1 92248714 92249013 -189944651 - AluSx SINE Alu -1 311 1 238 189 27 14 chr1 92249404 92249478 -189944186 + (TA)n Simple_repeat Simple_repeat 2 76 0 878 118 0 15 chr1 92249578 92249713 -189943951 - FLAM_C SINE Alu 0 133 1 884 146 0 15 chr1 92250015 92250152 -189943512 + AluJb SINE Alu 1 135 -177 2424 51 0 3 chr1 92250552 92250848 -189942816 + AluY SINE Alu 1 295 -16 2135 46 50 7 chr1 92252027 92252309 -189941355 - AluY SINE Alu -16 295 2 1638 110 30 4 chr1 92252462 92252530 -189941134 + AluSx SINE Alu 59 124 -188 237 33 0 0 chr1 92252530 92252560 -189941104 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 1638 110 30 4 chr1 92252560 92252728 -189940936 + AluSx SINE Alu 124 301 -11 304 267 47 0 chr1 92252853 92252939 -189940725 + L1MC4 LINE L1 6614 6703 -1339 * 310 294 0 22 chr1 92252865 92252957 -189940707 - L1MC4 LINE L1 -1339 6703 6614 250 181 14 14 chr1 92252957 92253029 -189940635 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 358 190 50 30 chr1 92253069 92253169 -189940495 - AluSg/x SINE Alu -18 282 181 304 267 47 0 chr1 92253291 92253377 -189940287 + L1MC4 LINE L1 6614 6703 -1339 341 300 0 0 chr1 92253391 92253481 -189940183 + L1MC4 LINE L1 6614 6703 -1339 2050 100 14 4 chr1 92253507 92253788 -189939876 - AluSx SINE Alu -28 284 1 21 71 0 0 chr1 92253790 92253832 -189939832 + AT_rich Low_complexity Low_complexity 1 42 0 318 26 0 0 chr1 92253884 92253923 -189939741 + (TG)n Simple_repeat Simple_repeat 2 40 0 209 184 0 0 chr1 92253924 92253962 -189939702 + GA-rich Low_complexity Low_complexity 2 39 0 295 320 90 41 chr1 92254070 92254192 -189939472 - MIR SINE MIR -62 146 19 2302 84 27 0 chr1 92254385 92254682 -189938982 + AluSc SINE Alu 3 307 -2 2286 111 0 0 chr1 92254847 92255154 -189938510 - AluSx SINE Alu -5 307 1 25 51 0 0 chr1 92255218 92255257 -189938407 + AT_rich Low_complexity Low_complexity 1 39 0 444 299 95 27 chr1 92255586 92255807 -189937857 + L2 LINE L2 3078 3313 0 280 156 0 0 chr1 92256167 92256212 -189937452 + L2 LINE L2 3268 3312 -1 2067 216 72 41 chr1 92256526 92256624 -189937040 + L1MC4 LINE L1 6457 6550 -1492 2129 123 0 3 chr1 92256624 92256932 -189936732 + AluSg1 SINE Alu 1 307 -2 2067 216 72 41 chr1 92256932 92257444 -189936220 + L1MC4 LINE L1 6550 7086 -956 1711 264 108 11 chr1 92257455 92258020 -189935644 + L1MC4 LINE L1 7280 7899 -143 1769 159 36 36 chr1 92258193 92258558 -189935106 + MLT1A1 LTR MaLR 1 365 0 889 181 124 10 chr1 92258716 92258909 -189934755 - AluJb SINE Alu -4 308 94 2375 101 19 27 chr1 92259307 92259674 -189933990 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr1 92259868 92259889 -189933775 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr1 92260336 92260364 -189933300 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 249 108 0 0 chr1 92260380 92260417 -189933247 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 405 305 92 0 chr1 92260447 92260588 -189933076 + MIR SINE MIR 49 202 -60 277 154 31 0 chr1 92260614 92260753 -189932911 + CT-rich Low_complexity Low_complexity 1 143 0 2385 88 3 3 chr1 92263426 92263734 -189929930 + AluSg SINE Alu 1 308 -2 2021 135 0 4 chr1 92263761 92264073 -189929591 + AluSg SINE Alu 2 312 0 1000 136 41 0 chr1 92264315 92264513 -189929151 + AluSg/x SINE Alu 106 310 0 417 327 108 48 chr1 92264534 92264844 -189928820 - MLT1K LTR MaLR -104 484 137 709 218 78 10 chr1 92264844 92265037 -189928627 + MER3 DNA MER1_type 2 207 -2 417 327 108 48 chr1 92265037 92265182 -189928482 - MLT1K LTR MaLR -451 137 2 189 206 0 0 chr1 92265644 92265678 -189927986 - L2 LINE L2 -80 3233 3200 397 232 173 46 chr1 92265741 92265945 -189927719 - L1ME4a LINE L1 -17 6104 5853 2199 115 0 0 chr1 92265945 92266233 -189927431 - AluSc SINE Alu -21 288 1 397 232 173 46 chr1 92266233 92266312 -189927352 - L1ME4a LINE L1 -268 5853 5785 435 269 9 9 chr1 92266405 92266513 -189927151 + L2 LINE L2 3200 3307 -6 314 282 51 0 chr1 92266541 92266658 -189927006 - L1ME4a LINE L1 -574 5547 5425 206 232 18 0 chr1 92267212 92267268 -189926396 + CT-rich Low_complexity Low_complexity 2 58 0 47 0 0 0 chr1 92267586 92267633 -189926031 + AT_rich Low_complexity Low_complexity 1 47 0 24 32 0 0 chr1 92268850 92268881 -189924783 + AT_rich Low_complexity Low_complexity 1 31 0 2117 126 20 0 chr1 92268949 92269243 -189924421 + AluSx SINE Alu 1 300 -12 294 290 105 8 chr1 92270304 92270428 -189923236 - L2 LINE L2 0 3313 3178 2221 125 25 55 chr1 92271780 92272181 -189921483 - MLT1B LTR MaLR -1 389 1 1260 127 41 0 chr1 92272272 92272492 -189921172 + L1PA13 LINE L1 5930 6158 -5 2343 85 3 13 chr1 92272492 92272798 -189920866 + AluSp SINE Alu 1 303 -10 27 0 0 0 chr1 92272804 92272831 -189920833 + AT_rich Low_complexity Low_complexity 1 27 0 1233 221 19 4 chr1 92272855 92273113 -189920551 + MLT1C LTR MaLR 206 467 0 2114 119 3 7 chr1 92273248 92273542 -189920122 + AluSx SINE Alu 1 293 -19 2321 90 3 0 chr1 92273605 92273904 -189919760 + AluY SINE Alu 1 300 -11 236 268 0 0 chr1 92274183 92274254 -189919410 + (TTTA)n Simple_repeat Simple_repeat 1 71 0 2193 104 0 0 chr1 92274587 92274876 -189918788 - AluY SINE Alu -22 289 1 2034 109 160 21 chr1 92274928 92275303 -189918361 - MSTA LTR MaLR 0 428 2 180 0 0 0 chr1 92276861 92276881 -189916783 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 669 209 165 10 chr1 92276934 92277140 -189916524 + MIR SINE MIR 12 249 -13 25 0 0 0 chr1 92277360 92277385 -189916279 + AT_rich Low_complexity Low_complexity 1 25 0 289 302 38 9 chr1 92277538 92277644 -189916020 - MER20B DNA MER1_type -616 167 59 189 0 0 0 chr1 92278948 92278969 -189914695 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 30 27 0 0 chr1 92279563 92279600 -189914064 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr1 92280501 92280541 -189913123 + AT_rich Low_complexity Low_complexity 1 40 0 576 229 82 18 chr1 92281978 92282148 -189911516 - MIR SINE MIR -16 246 66 266 289 0 13 chr1 92283038 92283114 -189910550 + MIR SINE MIR 79 153 -109 196 180 320 0 chr1 92283121 92283171 -189910493 + MIR SINE MIR 90 155 -107 240 91 0 0 chr1 92283205 92283238 -189910426 + MER116 DNA Mariner 48 80 0 221 267 200 0 chr1 92283238 92283313 -189910351 + MIR SINE MIR 156 245 -17 21 57 0 0 chr1 92284003 92284038 -189909626 + AT_rich Low_complexity Low_complexity 1 35 0 2015 131 0 7 chr1 92284038 92284328 -189909336 - AluJb SINE Alu -24 288 1 21 0 0 0 chr1 92284488 92284509 -189909155 + AT_rich Low_complexity Low_complexity 1 21 0 360 318 0 0 chr1 92284565 92284653 -189909011 + (CATA)n Simple_repeat Simple_repeat 2 89 0 234 268 49 0 chr1 92284654 92284736 -189908928 - L1MC4 LINE L1 -1342 6700 6615 215 277 0 0 chr1 92284738 92284785 -189908879 + (TA)n Simple_repeat Simple_repeat 1 47 0 624 178 11 38 chr1 92284956 92285141 -189908523 + CT-rich Low_complexity Low_complexity 1 180 0 543 323 81 0 chr1 92285156 92285354 -189908310 + MIR SINE MIR 49 262 0 393 174 0 0 chr1 92285538 92285636 -189908028 + (TA)n Simple_repeat Simple_repeat 2 99 0 386 256 233 0 chr1 92286292 92286421 -189907243 + MER5A DNA MER1_type 30 188 -1 230 0 33 0 chr1 92286722 92286752 -189906912 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2946 109 9 2 chr1 92287711 92288142 -189905522 + MER57B LTR ERV1 1 434 0 373 354 88 12 chr1 92289156 92289396 -189904268 - L3 LINE CR1 -161 1416 1159 21 0 0 0 chr1 92292181 92292202 -189901462 + AT_rich Low_complexity Low_complexity 1 21 0 229 167 21 0 chr1 92293052 92293100 -189900564 + L1M1 LINE L1 5867 5915 -387 2414 79 13 0 chr1 92293175 92293480 -189900184 + AluY SINE Alu 1 309 -2 2026 144 0 13 chr1 92293707 92294006 -189899658 + AluSx SINE Alu 1 295 -17 2066 101 9 69 chr1 92294007 92294143 -189899521 + AluSg SINE Alu 1 144 -166 1848 112 66 0 chr1 92294143 92294429 -189899235 + AluSx SINE Alu 1 305 -7 2066 101 9 69 chr1 92294429 92294610 -189899054 + AluSg SINE Alu 144 299 -11 25 0 0 0 chr1 92295174 92295199 -189898465 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 92295999 92296021 -189897643 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 92296590 92296617 -189897047 + AT_rich Low_complexity Low_complexity 1 27 0 2410 96 3 0 chr1 92296950 92297262 -189896402 + AluSp SINE Alu 1 313 0 557 285 63 92 chr1 92297478 92297763 -189895901 - L1ME3A LINE L1 -230 5940 5648 818 226 108 0 chr1 92297763 92297958 -189895706 + MER20 DNA MER1_type 1 216 -3 557 285 63 92 chr1 92297958 92297991 -189895673 - L1ME3A LINE L1 -522 5648 5616 1686 172 57 7 chr1 92297991 92298288 -189895376 + AluJb SINE Alu 1 312 0 557 285 63 92 chr1 92298288 92298447 -189895217 - L1ME3A LINE L1 -554 5616 5481 1515 199 24 7 chr1 92298447 92298743 -189894921 - AluJo SINE Alu -11 301 1 557 285 63 92 chr1 92298743 92298881 -189894783 - L1ME3A LINE L1 -689 5481 5341 1823 168 10 0 chr1 92298882 92299174 -189894490 - AluJo SINE Alu -17 295 1 2127 109 7 14 chr1 92299200 92299494 -189894170 + AluSx SINE Alu 1 292 -20 297 315 27 7 chr1 92299563 92299712 -189893952 - L1ME3A LINE L1 -916 5230 5079 1102 273 104 45 chr1 92299719 92300254 -189893410 - L1ME3A LINE L1 -1111 5035 4533 2140 103 40 10 chr1 92300254 92300556 -189893108 - AluSx SINE Alu -1 311 1 2134 128 7 0 chr1 92300556 92300860 -189892804 - AluSg SINE Alu -3 307 1 1102 273 104 45 chr1 92300860 92300874 -189892790 - L1ME3A LINE L1 -1613 4533 4521 2336 80 3 3 chr1 92300874 92301173 -189892491 - AluSp SINE Alu -14 299 1 1102 273 104 45 chr1 92301173 92301712 -189891952 - L1ME3A LINE L1 -1625 4521 3880 437 334 74 27 chr1 92301946 92302284 -189891380 + L1MEd LINE L1 448 801 -5318 2340 96 0 0 chr1 92302367 92302668 -189890996 + AluSx SINE Alu 1 301 -11 2197 107 0 0 chr1 92302846 92303135 -189890529 + AluSx SINE Alu 1 289 -23 394 205 36 0 chr1 92303625 92303708 -189889956 + MLT1K LTR MaLR 503 588 0 2261 135 18 3 chr1 92304173 92304557 -189889107 + MLT1B LTR MaLR 1 390 0 382 312 19 25 chr1 92304835 92304992 -189888672 + MER5B DNA MER1_type 4 159 -19 206 303 157 0 chr1 92305865 92305954 -189887710 - L2 LINE L2 -9 3304 3202 2401 78 0 3 chr1 92306591 92306886 -189886778 - AluSc SINE Alu -15 294 1 202 158 26 0 chr1 92307074 92307112 -189886552 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 449 305 23 23 chr1 92307144 92307321 -189886343 + MIR SINE MIR 11 187 -75 1324 298 62 83 chr1 92307604 92307929 -189885735 - L3 LINE CR1 -489 1088 758 1727 164 32 0 chr1 92307929 92308209 -189885455 + AluJb SINE Alu 1 289 -23 1324 298 62 83 chr1 92308209 92308479 -189885185 - L3 LINE CR1 -819 758 510 2320 73 3 10 chr1 92308479 92308780 -189884884 + AluY SINE Alu 1 299 -12 1324 298 62 83 chr1 92308780 92308946 -189884718 - L3 LINE CR1 -1067 510 342 22 0 0 0 chr1 92309001 92309023 -189884641 + AT_rich Low_complexity Low_complexity 1 22 0 280 330 28 9 chr1 92309247 92309353 -189884311 + MIR SINE MIR 2 109 -153 654 244 144 22 chr1 92309520 92309791 -189883873 - L2 LINE L2 -5 3308 3005 23 68 0 0 chr1 92310651 92310695 -189882969 + AT_rich Low_complexity Low_complexity 1 44 0 387 319 31 31 chr1 92310842 92311002 -189882662 - MIR3 SINE MIR -7 201 42 235 109 18 109 chr1 92311065 92311120 -189882544 + MIR SINE MIR 132 181 -81 241 310 93 0 chr1 92311334 92311463 -189882201 + MIR SINE MIR 47 187 -75 271 304 134 0 chr1 92311525 92311637 -189882027 + L2 LINE L2 3142 3268 -4 1895 139 7 23 chr1 92313565 92313868 -189879796 - AluSx SINE Alu -14 298 1 215 236 69 0 chr1 92313868 92313940 -189879724 + T-rich Low_complexity Low_complexity 2 78 0 539 291 98 51 chr1 92314306 92314540 -189879124 - MIR SINE MIR 0 262 18 2230 130 0 0 chr1 92314884 92315185 -189878479 + AluSx SINE Alu 1 301 -11 1697 201 0 0 chr1 92315884 92316187 -189877477 + AluJo SINE Alu 1 303 -9 1611 173 14 0 chr1 92316275 92316559 -189877105 + AluJb SINE Alu 12 299 -13 1881 164 6 10 chr1 92316734 92317045 -189876619 + AluSx SINE Alu 1 310 -2 2393 98 11 22 chr1 92317314 92317673 -189875991 + THE1A LTR MaLR 1 355 0 2162 108 10 3 chr1 92317814 92318109 -189875555 + AluSx SINE Alu 1 297 -15 241 264 66 0 chr1 92318443 92318534 -189875130 - Charlie8 DNA MER1_type -1995 422 326 2310 149 65 2 chr1 92318649 92319046 -189874618 + MSTB LTR MaLR 5 426 0 389 217 12 171 chr1 92319088 92319161 -189874503 - Charlie8 DNA MER1_type -138 203 120 2226 100 0 7 chr1 92319161 92319452 -189874212 - AluSg SINE Alu -19 291 3 389 217 12 171 chr1 92319452 92319618 -189874046 - Charlie8 DNA MER1_type -221 120 2 211 197 183 14 chr1 92319668 92319739 -189873925 - L2 LINE L2 -107 3206 3124 1935 115 83 0 chr1 92319885 92320163 -189873501 + AluSc SINE Alu 2 302 -7 21 0 0 0 chr1 92320264 92320285 -189873379 + AT_rich Low_complexity Low_complexity 1 21 0 207 146 0 0 chr1 92320693 92320734 -189872930 + (CA)n Simple_repeat Simple_repeat 1 41 0 1110 193 4 13 chr1 92321305 92321533 -189872131 + AluJb SINE Alu 86 311 -1 25 0 0 0 chr1 92321606 92321631 -189872033 + AT_rich Low_complexity Low_complexity 1 25 0 207 100 0 0 chr1 92322885 92322915 -189870749 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 26 64 0 0 chr1 92322924 92322971 -189870693 + AT_rich Low_complexity Low_complexity 1 47 0 1476 198 51 3 chr1 92325549 92325842 -189867822 + AluJo SINE Alu 3 309 -3 2048 108 0 24 chr1 92326413 92326725 -189866939 - AluSg SINE Alu 0 306 2 22 35 0 0 chr1 92328832 92328861 -189864803 + AT_rich Low_complexity Low_complexity 1 29 0 360 88 0 0 chr1 92331831 92331888 -189861776 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2161 100 0 4 chr1 92331888 92332168 -189861496 - AluSc SINE Alu -30 279 1 2392 71 0 12 chr1 92332179 92332501 -189861163 - AluYb8 SINE Alu 0 318 1 348 233 0 23 chr1 92332509 92332595 -189861069 + L1M4 LINE L1 4899 4982 -1164 2241 113 0 3 chr1 92332595 92332897 -189860767 - AluSx SINE Alu -11 301 1 355 276 90 90 chr1 92334180 92334448 -189859216 - L1M2 LINE L1 -5870 979 712 25 0 0 0 chr1 92339344 92339369 -189854295 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr1 92343680 92343705 -189849959 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr1 92343862 92343903 -189849761 + AT_rich Low_complexity Low_complexity 1 41 0 29 0 0 0 chr1 92345796 92345825 -189847839 + AT_rich Low_complexity Low_complexity 1 29 0 716 210 90 31 chr1 92348360 92348572 -189845092 - L1PB4 LINE L1 -1 6155 5933 1364 169 55 41 chr1 92349279 92349569 -189844095 + AluJo SINE Alu 1 294 -18 23 0 0 0 chr1 92351363 92351386 -189842278 + AT_rich Low_complexity Low_complexity 1 23 0 225 213 33 33 chr1 92351557 92351618 -189842046 + L2 LINE L2 3250 3310 -3 180 300 60 0 chr1 92351799 92351849 -189841815 + L2 LINE L2 3209 3261 -11 180 0 0 0 chr1 92353425 92353445 -189840219 + (T)n Simple_repeat Simple_repeat 1 20 0 55 40 0 0 chr1 92353766 92353842 -189839822 + AT_rich Low_complexity Low_complexity 1 76 0 836 224 0 0 chr1 92353908 92354073 -189839591 - FRAM SINE Alu -6 170 6 576 195 19 6 chr1 92354687 92354846 -189838818 + CT-rich Low_complexity Low_complexity 2 162 0 205 227 23 0 chr1 92354860 92354904 -189838760 - L2 LINE L2 -10 3262 3218 257 313 17 70 chr1 92355116 92355231 -189838433 - L2 LINE L2 -252 3020 2912 22 0 0 0 chr1 92355254 92355276 -189838388 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 92355329 92355363 -189838301 + AT_rich Low_complexity Low_complexity 1 34 0 1692 158 3 14 chr1 92355693 92355977 -189837687 - AluJo SINE Alu -31 281 1 387 41 0 0 chr1 92356350 92356399 -189837265 + (TC)n Simple_repeat Simple_repeat 1 49 0 1203 171 21 104 chr1 92356473 92356769 -189836895 + AluJo SINE Alu 1 269 -43 1965 116 18 11 chr1 92356769 92357054 -189836610 - AluSc SINE Alu -22 287 1 1203 171 21 104 chr1 92357054 92357084 -189836580 + AluJo SINE Alu 269 300 -12 1853 149 3 0 chr1 92358982 92359271 -189834393 - AluSx SINE Alu -22 290 1 737 278 10 5 chr1 92359493 92359691 -189833973 + MER58A DNA MER1_type 26 224 0 2159 108 0 0 chr1 92360314 92360602 -189833062 - AluSq SINE Alu -9 304 17 2264 81 3 0 chr1 92361915 92362213 -189831451 - AluSx SINE Alu -13 299 1 280 260 210 10 chr1 92363165 92363265 -189830399 + L2 LINE L2 3192 3311 -2 401 302 62 0 chr1 92363273 92363402 -189830262 + MIR SINE MIR 11 147 -115 2180 103 0 10 chr1 92363549 92363849 -189829815 - AluSg SINE Alu -13 297 1 183 80 0 0 chr1 92368933 92368958 -189824706 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 24 67 0 0 chr1 92369678 92369723 -189823941 + AT_rich Low_complexity Low_complexity 1 45 0 2265 147 13 5 chr1 92370793 92371175 -189822489 - L1PB1 LINE L1 -1 6150 5766 210 113 47 38 chr1 92371257 92371363 -189822301 + (TA)n Simple_repeat Simple_repeat 1 107 0 496 173 73 2 chr1 92371369 92371477 -189822187 - L1PB1 LINE L1 -361 5790 5678 203 363 11 0 chr1 92373017 92373108 -189820556 + (CATATA)n Simple_repeat Simple_repeat 2 93 0 425 244 34 17 chr1 92373110 92373229 -189820435 + L2 LINE L2 3193 3313 0 362 219 21 42 chr1 92373415 92373511 -189820153 - MER5A DNA MER1_type -95 94 1 2086 136 0 0 chr1 92373758 92374060 -189819604 - AluSg SINE Alu -8 302 1 21 43 0 22 chr1 92374524 92374549 -189819115 + AT_rich Low_complexity Low_complexity 1 26 -19 2104 122 0 0 chr1 92374549 92374835 -189818829 - AluSg SINE Alu -24 286 1 21 43 0 22 chr1 92374835 92374855 -189818809 + AT_rich Low_complexity Low_complexity 26 45 0 25 51 0 0 chr1 92375506 92375545 -189818119 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 92376611 92376652 -189817012 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr1 92377406 92377429 -189816235 + AT_rich Low_complexity Low_complexity 1 23 0 518 255 163 0 chr1 92378635 92378776 -189814888 - MER5A DNA MER1_type -1 188 25 248 312 11 21 chr1 92379727 92379820 -189813844 - MIR3 SINE MIR -6 202 111 379 206 75 0 chr1 92382086 92382176 -189811488 + Charlie5 DNA MER1_type 1 88 -2524 21 57 0 0 chr1 92382948 92382983 -189810681 + AT_rich Low_complexity Low_complexity 1 35 0 309 51 0 0 chr1 92383138 92383177 -189810487 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 92383325 92383347 -189810317 + AT_rich Low_complexity Low_complexity 1 22 0 270 314 157 13 chr1 92385795 92385948 -189807716 + MIR SINE MIR 3 177 -85 276 282 19 39 chr1 92386456 92386559 -189807105 - MER102b DNA MER1_type -15 326 226 1860 171 0 7 chr1 92386560 92386865 -189806799 + AluJo SINE Alu 1 303 -9 198 167 0 0 chr1 92386930 92386966 -189806698 + CT-rich Low_complexity Low_complexity 2 37 0 481 258 66 20 chr1 92387043 92387194 -189806470 - MER102b DNA MER1_type -182 159 2 357 348 70 22 chr1 92388412 92388639 -189805025 - MIR SINE MIR 0 262 25 1901 153 0 3 chr1 92390810 92391111 -189802553 - AluJo SINE Alu -12 300 1 26 30 0 0 chr1 92391114 92391147 -189802517 + AT_rich Low_complexity Low_complexity 1 33 0 2005 108 7 4 chr1 92391347 92391650 -189802014 + AluSg SINE Alu 1 304 0 24 0 0 0 chr1 92391725 92391749 -189801915 + AT_rich Low_complexity Low_complexity 1 24 0 750 169 0 0 chr1 92391756 92391880 -189801784 - AluJb SINE Alu -188 124 1 2316 95 0 13 chr1 92392418 92392724 -189800940 - AluSq SINE Alu -11 302 1 1941 144 20 0 chr1 92393010 92393309 -189800355 + AluSx SINE Alu 1 305 -7 186 118 0 0 chr1 92393972 92394006 -189799658 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 21 0 0 0 chr1 92395900 92395921 -189797743 + AT_rich Low_complexity Low_complexity 1 21 0 1795 150 29 26 chr1 92396083 92396205 -189797459 + AluSx SINE Alu 1 121 -191 184 29 29 29 chr1 92396205 92396239 -189797425 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1795 150 29 26 chr1 92396239 92396422 -189797242 + AluSx SINE Alu 121 307 -5 357 341 43 12 chr1 92397334 92397498 -189796166 - MIR SINE MIR -85 177 9 442 278 180 51 chr1 92397564 92397898 -189795766 + L2 LINE L2 2937 3313 0 25 0 0 0 chr1 92397964 92397989 -189795675 + AT_rich Low_complexity Low_complexity 1 25 0 383 0 21 0 chr1 92399450 92399497 -189794167 + (TG)n Simple_repeat Simple_repeat 1 48 0 344 264 11 11 chr1 92399552 92399639 -189794025 - L2 LINE L2 -32 3281 3195 230 270 164 89 chr1 92399720 92400266 -189793398 + L2 LINE L2 2641 3237 -76 23 0 0 0 chr1 92401193 92401216 -189792448 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 92401559 92401580 -189792084 + AT_rich Low_complexity Low_complexity 1 21 0 7257 46 8 1 chr1 92402337 92403802 -189789862 - L1PA5 LINE L1 0 6154 4684 446 108 14 0 chr1 92405993 92406067 -189787597 + (TCTTG)n Simple_repeat Simple_repeat 3 77 0 1897 171 0 3 chr1 92406078 92406388 -189787276 - AluSx SINE Alu -3 309 1 21 36 0 0 chr1 92407681 92407709 -189785955 + AT_rich Low_complexity Low_complexity 1 28 0 199 333 32 57 chr1 92408035 92408158 -189785506 - MIR3 SINE MIR -51 157 38 471 277 143 45 chr1 92408630 92408854 -189784810 + MIR SINE MIR 7 252 -10 248 296 143 0 chr1 92410746 92410844 -189782820 + MIR3 SINE MIR 66 177 -31 1806 128 0 52 chr1 92411111 92411400 -189782264 + AluSx SINE Alu 1 274 -38 2239 156 92 28 chr1 92411790 92412257 -189781407 - MER61D LTR ERV1 0 501 5 2396 61 0 3 chr1 92412560 92412855 -189780809 - AluY SINE Alu -15 296 3 430 172 239 18 chr1 92414008 92414171 -189779493 + MER105 DNA DNA 4 202 -2 24 0 0 0 chr1 92414897 92414921 -189778743 + AT_rich Low_complexity Low_complexity 1 24 0 1393 199 62 4 chr1 92415376 92415652 -189778012 - AluJb SINE Alu -16 296 5 2037 107 4 7 chr1 92417571 92417851 -189775813 - AluSc SINE Alu -30 279 1 400 268 172 13 chr1 92418738 92418895 -189774769 - MER112 DNA MER1_type 0 260 79 6918 131 24 25 chr1 92419777 92419811 -189773853 + Tigger1 DNA MER2_type 24 57 -2361 2187 78 3 43 chr1 92419811 92420133 -189773531 - AluY SINE Alu -2 309 1 6918 131 24 25 chr1 92420133 92421259 -189772405 + Tigger1 DNA MER2_type 57 1183 -1235 21 57 0 0 chr1 92421704 92421739 -189771925 + AT_rich Low_complexity Low_complexity 1 35 0 284 237 26 18 chr1 92422537 92422651 -189771013 + (TTATA)n Simple_repeat Simple_repeat 4 118 0 294 29 0 0 chr1 92423341 92423376 -189770288 + (TG)n Simple_repeat Simple_repeat 1 35 0 396 323 30 12 chr1 92423452 92423619 -189770045 - MIR SINE MIR -58 204 35 422 254 95 0 chr1 92423987 92424113 -189769551 - MER58 DNA MER1_type -1 2419 2282 320 146 115 21 chr1 92424126 92424222 -189769442 - MER58 DNA MER1_type -162 179 75 27 0 0 0 chr1 92424319 92424346 -189769318 + AT_rich Low_complexity Low_complexity 1 27 0 241 317 30 25 chr1 92424359 92424479 -189769185 - MIR SINE MIR -76 132 14 2302 76 20 7 chr1 92426775 92427076 -189766588 - AluSq SINE Alu -8 305 1 21 0 0 0 chr1 92427685 92427706 -189765958 + AT_rich Low_complexity Low_complexity 1 21 0 382 259 86 9 chr1 92428365 92428481 -189765183 + L2 LINE L2 3143 3267 -5 715 193 17 77 chr1 92429330 92429511 -189764153 + FRAM SINE Alu 1 167 -9 631 295 42 16 chr1 92431372 92431565 -189762099 + MIR SINE MIR 18 215 -47 333 253 78 54 chr1 92432102 92432268 -189761396 + L1M4 LINE L1 717 886 -5656 824 261 90 28 chr1 92432332 92432689 -189760975 + L1M4 LINE L1 894 1272 -5274 428 293 0 45 chr1 92432789 92432922 -189760742 - MER5A DNA MER1_type -45 144 18 25 31 0 0 chr1 92432943 92432975 -189760689 + AT_rich Low_complexity Low_complexity 1 32 0 2078 139 2 66 chr1 92433291 92433687 -189759977 - MER4B LTR ERV1 -47 563 193 1985 137 0 27 chr1 92433697 92433997 -189759667 + AluSx SINE Alu 1 292 -20 693 171 0 16 chr1 92434009 92434132 -189759532 - MER4D LTR ERV1 -694 209 89 249 239 0 60 chr1 92434474 92434541 -189759123 - MIR SINE MIR -61 147 85 457 300 56 56 chr1 92434804 92435054 -189758610 + MIR SINE MIR 10 259 -3 429 123 57 0 chr1 92435081 92435187 -189758477 + (TA)n Simple_repeat Simple_repeat 2 113 0 315 0 0 0 chr1 92435194 92435229 -189758435 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr1 92435311 92435348 -189758316 + AT_rich Low_complexity Low_complexity 1 37 0 673 217 34 11 chr1 92435778 92435953 -189757711 - MSTD LTR MaLR -2 394 216 1664 116 4 0 chr1 92436009 92436241 -189757423 + AluSg SINE Alu 1 233 -77 436 230 9 26 chr1 92436273 92436386 -189757278 - MSTD LTR MaLR -317 111 1 2072 106 3 7 chr1 92436481 92436773 -189756891 - AluSq SINE Alu -16 297 7 22 35 0 0 chr1 92437226 92437255 -189756409 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr1 92437329 92437369 -189756295 + (TG)n Simple_repeat Simple_repeat 2 41 0 1304 203 59 7 chr1 92439001 92439272 -189754392 - L1MC1 LINE L1 -6 6327 6043 1260 195 13 119 chr1 92439275 92439660 -189754004 + MER7A DNA MER2_type 4 345 -1 2591 172 75 31 chr1 92439660 92440246 -189753418 - L1MC1 LINE L1 -290 6043 5351 2119 145 0 3 chr1 92440246 92440556 -189753108 - AluSx SINE Alu -3 309 1 2591 172 75 31 chr1 92440556 92440723 -189752941 - L1MC1 LINE L1 -982 5351 5193 2061 117 3 0 chr1 92441339 92441656 -189752008 + AluSx SINE Alu 2 319 0 2048 144 0 0 chr1 92443440 92443752 -189749912 - AluSx SINE Alu 0 312 1 181 326 12 35 chr1 92444957 92445043 -189748621 - MIR3 SINE MIR -8 200 117 23 0 0 0 chr1 92445328 92445351 -189748313 + AT_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr1 92445369 92445398 -189748266 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr1 92445621 92445644 -189748020 + AT_rich Low_complexity Low_complexity 1 23 0 1409 147 82 18 chr1 92446480 92446759 -189746905 - AluJb SINE Alu -15 297 1 31 26 0 0 chr1 92448087 92448125 -189745539 + AT_rich Low_complexity Low_complexity 1 38 0 627 200 23 8 chr1 92448379 92448509 -189745155 - FLAM_C SINE Alu 0 133 2 3479 239 83 37 chr1 92449237 92450395 -189743269 + MER69B DNA AcHobo 15 1225 -1 25 31 0 0 chr1 92451339 92451371 -189742293 + AT_rich Low_complexity Low_complexity 1 32 0 674 269 77 50 chr1 92451763 92452179 -189741485 + LTR16A LTR ERVL 17 443 -7 726 177 0 0 chr1 92454114 92454244 -189739420 + FLAM_C SINE Alu 1 130 -13 224 237 17 0 chr1 92454288 92454347 -189739317 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 23 54 0 0 chr1 92458744 92458781 -189734883 + AT_rich Low_complexity Low_complexity 1 37 0 22 94 0 0 chr1 92458826 92458890 -189734774 + AT_rich Low_complexity Low_complexity 1 64 0 465 328 92 18 chr1 92461219 92461448 -189732216 - MIR SINE MIR -5 257 12 2005 119 0 52 chr1 92462230 92462557 -189731107 + AluSx SINE Alu 1 310 -2 1177 153 0 48 chr1 92463111 92463320 -189730344 - AluJb SINE Alu -113 199 1 565 239 15 85 chr1 92463947 92464071 -189729593 - MER5A DNA MER1_type -2 187 81 2270 74 6 26 chr1 92464071 92464382 -189729282 - AluSp SINE Alu -8 305 1 565 239 15 85 chr1 92464382 92464458 -189729206 - MER5A DNA MER1_type -108 81 1 23 54 0 0 chr1 92465369 92465406 -189728258 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr1 92465850 92465883 -189727781 + AT_rich Low_complexity Low_complexity 1 33 0 188 299 23 23 chr1 92467460 92467547 -189726117 - MIR SINE MIR -26 236 150 26 50 0 0 chr1 92471343 92471383 -189722281 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr1 92472594 92472636 -189721028 + AT_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr1 92477249 92477270 -189716394 + (TC)n Simple_repeat Simple_repeat 2 22 0 658 225 35 47 chr1 92478840 92479009 -189714655 + MIR SINE MIR 85 251 -11 21 36 0 0 chr1 92479058 92479086 -189714578 + AT_rich Low_complexity Low_complexity 1 28 0 2200 106 0 0 chr1 92479317 92479619 -189714045 + AluSc SINE Alu 1 302 -7 21 36 0 0 chr1 92479629 92479657 -189714007 + AT_rich Low_complexity Low_complexity 1 28 0 36 70 0 0 chr1 92488408 92488479 -189705185 + AT_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr1 92488557 92488579 -189705085 + AT_rich Low_complexity Low_complexity 1 22 0 1862 140 0 33 chr1 92488800 92489107 -189704557 + AluJb SINE Alu 2 298 -14 902 93 23 8 chr1 92489266 92489395 -189704269 + AluSg SINE Alu 1 131 -179 1724 112 16 4 chr1 92489399 92489650 -189704014 + AluSq SINE Alu 40 293 -20 21 57 0 0 chr1 92489960 92489995 -189703669 + AT_rich Low_complexity Low_complexity 1 35 0 1216 248 48 44 chr1 92490019 92490455 -189703209 - L1ME1 LINE L1 -11 6155 5718 1169 185 68 23 chr1 92490466 92490883 -189702781 - L1ME1 LINE L1 -578 5586 5149 452 225 164 68 chr1 92490893 92491184 -189702480 - L1MC5 LINE L1 -102 7859 7597 2160 117 3 0 chr1 92491184 92491482 -189702182 - AluSq SINE Alu -14 299 1 452 225 164 68 chr1 92491482 92491702 -189701962 - L1MC5 LINE L1 -364 7597 7299 226 314 29 9 chr1 92491728 92491833 -189701831 - L1MC4a LINE L1 -458 7350 7244 2137 125 7 0 chr1 92491850 92492155 -189701509 - AluSx SINE Alu -5 307 1 439 249 20 109 chr1 92492212 92492413 -189701251 - MLT1I LTR MaLR -23 386 204 236 301 75 0 chr1 92492589 92492682 -189700982 - L1MC4 LINE L1 -16 8026 7927 2230 116 0 7 chr1 92492883 92493193 -189700471 - AluSq SINE Alu -5 308 1 293 333 130 9 chr1 92493444 92493675 -189699989 - L1ME LINE L1 -527 5642 5381 274 276 42 83 chr1 92493757 92494122 -189699542 - L1ME LINE L1 -872 5274 4924 721 277 116 44 chr1 92494240 92494876 -189698788 - L1ME LINE L1 -1426 4720 4039 303 267 53 80 chr1 92495292 92495442 -189698222 - L1ME LINE L1 -2661 3485 3340 1141 214 9 5 chr1 92496565 92496780 -189696884 - MER58A DNA MER1_type 0 224 9 2471 57 0 0 chr1 92498647 92498944 -189694720 - AluY SINE Alu -14 297 1 24 0 0 0 chr1 92503437 92503461 -189690203 + AT_rich Low_complexity Low_complexity 1 24 0 1715 180 0 3 chr1 92504013 92504308 -189689356 + AluJo SINE Alu 3 296 -16 21 0 0 0 chr1 92505319 92505340 -189688324 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 92506269 92506299 -189687365 + AT_rich Low_complexity Low_complexity 1 30 0 239 306 139 19 chr1 92509561 92509669 -189683995 + L2 LINE L2 3147 3267 -5 224 205 39 77 chr1 92510748 92510826 -189682838 - MIR SINE MIR -50 212 138 21 0 0 0 chr1 92512415 92512436 -189681228 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 92513470 92513498 -189680166 + AT_rich Low_complexity Low_complexity 1 28 0 244 250 88 38 chr1 92516297 92516377 -189677287 + L2 LINE L2 3183 3266 -6 30 27 0 0 chr1 92519008 92519045 -189674619 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 92520882 92520912 -189672752 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 92523562 92523596 -189670068 + AT_rich Low_complexity Low_complexity 1 34 0 452 18 18 0 chr1 92524415 92524472 -189669192 + (TA)n Simple_repeat Simple_repeat 2 59 0 818 81 0 0 chr1 92524473 92524584 -189669080 - AluSg/x SINE Alu 0 309 199 183 42 0 0 chr1 92525274 92525298 -189668366 + (TAA)n Simple_repeat Simple_repeat 1 24 0 549 184 0 0 chr1 92525307 92525405 -189668259 - AluJ/FLAM SINE Alu -213 99 2 923 101 8 0 chr1 92526536 92526665 -189666999 + AluSq/x SINE Alu 3 132 -180 1928 142 7 0 chr1 92526667 92526969 -189666695 + AluSx SINE Alu 1 304 -8 429 280 160 15 chr1 92528087 92528287 -189665377 - MIR SINE MIR -24 238 10 2033 106 7 27 chr1 92528818 92529119 -189664545 - AluSx SINE Alu -17 295 1 208 292 222 11 chr1 92529401 92529586 -189664078 - MIR SINE MIR -37 225 2 270 78 0 39 chr1 92530002 92530053 -189663611 + LTR66 LTR ERVL 391 439 -171 216 280 0 0 chr1 92530053 92530103 -189663561 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 332 164 0 135 chr1 92530103 92530207 -189663457 - L1MC4 LINE L1 -1339 6703 6614 301 268 0 0 chr1 92530212 92530294 -189663370 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 336 267 23 0 chr1 92530296 92530382 -189663282 - L1MC4 LINE L1 -1340 6702 6615 446 231 0 6 chr1 92530384 92530544 -189663120 + (TA)n Simple_repeat Simple_repeat 2 160 0 1508 172 64 0 chr1 92531187 92531299 -189662365 + AluJo SINE Alu 1 104 -208 192 97 0 0 chr1 92531299 92531330 -189662334 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1508 172 64 0 chr1 92531330 92531484 -189662180 + AluJo SINE Alu 104 284 -28 192 265 72 48 chr1 92531657 92531740 -189661924 + MIR SINE MIR 42 126 -82 21 36 0 0 chr1 92532039 92532067 -189661597 + AT_rich Low_complexity Low_complexity 1 28 0 537 211 68 7 chr1 92532695 92532842 -189660822 + MIR SINE MIR 90 245 -17 209 277 0 0 chr1 92533199 92533246 -189660418 + CT-rich Low_complexity Low_complexity 5 51 0 234 289 167 22 chr1 92533299 92533389 -189660275 - L2 LINE L2 -1 3312 3210 534 308 14 57 chr1 92533403 92533614 -189660050 - MIR SINE MIR -2 260 59 2173 102 0 3 chr1 92533739 92534034 -189659630 + AluSc SINE Alu 1 294 -15 255 363 37 53 chr1 92534057 92534302 -189659362 - L2 LINE L2 -221 3051 2811 30 27 0 0 chr1 92534438 92534475 -189659189 + AT_rich Low_complexity Low_complexity 1 37 0 919 272 35 60 chr1 92534549 92534917 -189658747 - L1ME3A LINE L1 -48 6122 5764 325 347 0 0 chr1 92534930 92535028 -189658636 - MIR SINE MIR -108 154 57 479 315 9 42 chr1 92535320 92535533 -189658131 - MIR SINE MIR -43 219 14 365 328 57 45 chr1 92535544 92535788 -189657876 - L2 LINE L2 -204 3109 2863 1504 226 29 52 chr1 92537996 92538025 -189655639 - MLT2D LTR ERVL -12 402 374 366 23 0 0 chr1 92538025 92538068 -189655596 + (TG)n Simple_repeat Simple_repeat 2 44 0 1504 226 29 52 chr1 92538068 92538122 -189655542 - MLT2D LTR ERVL -40 374 320 2101 121 0 13 chr1 92538122 92538435 -189655229 + AluSx SINE Alu 1 309 -3 1504 226 29 52 chr1 92538435 92538758 -189654906 - MLT2D LTR ERVL -94 320 4 1043 58 30 34 chr1 92539430 92539716 -189653948 + (TTTC)n Simple_repeat Simple_repeat 1 465 0 1723 129 7 18 chr1 92539719 92539999 -189653665 - AluSx SINE Alu -6 306 30 311 308 19 39 chr1 92540247 92540403 -189653261 + L2 LINE L2 3161 3313 0 313 235 85 52 chr1 92540407 92540485 -189653179 + L1MEd LINE L1 2 76 -6043 2783 10 0 0 chr1 92540485 92540791 -189652873 + AluY SINE Alu 1 306 -5 313 235 85 52 chr1 92540791 92540865 -189652799 + L1MEd LINE L1 76 159 -5960 1991 134 3 3 chr1 92541519 92541818 -189651846 + AluSx SINE Alu 14 312 0 626 74 148 82 chr1 92541854 92541989 -189651675 + L1MB3 LINE L1 6031 6174 -9 5753 120 10 10 chr1 92541989 92543255 -189650409 - L1PA15 LINE L1 0 6165 4908 839 118 0 7 chr1 92543255 92543391 -189650273 - L1 LINE L1 -1403 4743 4609 201 294 155 21 chr1 92544067 92544261 -189649403 + L3b LINE CR1 1108 1327 -256 199 200 15 62 chr1 92544689 92544754 -189648910 + MIR SINE MIR 163 224 -38 231 197 13 40 chr1 92544788 92544864 -189648800 + L1MC4 LINE L1 6626 6699 -1343 183 80 0 0 chr1 92544919 92544944 -189648720 + (TAA)n Simple_repeat Simple_repeat 2 26 0 278 260 27 0 chr1 92544984 92545057 -189648607 - MIR SINE MIR -85 177 103 374 261 34 25 chr1 92547236 92547355 -189646309 - MIR3 SINE MIR -7 201 82 231 239 15 15 chr1 92547836 92547903 -189645761 + MLT1I LTR MaLR 340 406 -3 24 0 0 0 chr1 92548637 92548661 -189645003 + AT_rich Low_complexity Low_complexity 1 24 0 192 288 0 0 chr1 92548683 92548742 -189644922 + MIR SINE MIR 178 236 -26 236 200 0 67 chr1 92549081 92549186 -189644478 + A-rich Low_complexity Low_complexity 2 99 0 252 311 10 19 chr1 92549671 92549774 -189643890 + CT-rich Low_complexity Low_complexity 1 102 0 242 163 0 23 chr1 92551000 92551043 -189642621 - L2 LINE L2 -8 3305 3264 290 281 21 21 chr1 92551391 92551487 -189642177 - L2 LINE L2 -4 3268 3173 312 235 20 20 chr1 92601756 92601854 -189591810 + L1ME3 LINE L1 5787 5884 -280 346 217 38 120 chr1 92601894 92602078 -189591586 + L1ME3 LINE L1 5994 6165 -1 545 244 0 8 chr1 92603877 92604000 -189589664 - FRAM SINE Alu -6 170 49 301 258 41 107 chr1 92604009 92604192 -189589472 + MIR SINE MIR 3 172 -36 261 253 51 13 chr1 92604264 92604343 -189589321 + MER58A DNA MER1_type 1 82 -25 1867 196 7 5 chr1 92604444 92604847 -189588817 - L1 LINE L1 -1082 5064 4661 1422 164 178 0 chr1 92604848 92605152 -189588512 + MSTB LTR MaLR 69 426 0 818 253 109 42 chr1 92605374 92605923 -189587741 - LTR1B LTR ERV1 -75 751 119 420 183 32 0 chr1 92606633 92606726 -189586938 - MER5A DNA MER1_type -84 105 10 888 256 67 17 chr1 92607199 92607815 -189585849 + HsTC2a DNA Tc2 1 737 -5 405 374 49 0 chr1 92607957 92608120 -189585544 + MIR3 SINE MIR 15 185 -23 251 261 76 59 chr1 92608286 92608405 -189585259 - L3b LINE CR1 -268 1315 1195 310 234 64 64 chr1 92608789 92608930 -189584734 + LTR67 LTR ERVL 417 557 0 438 380 54 8 chr1 92609749 92609991 -189583673 + MIR SINE MIR 7 259 -3 27 49 0 0 chr1 92611308 92611349 -189582315 + AT_rich Low_complexity Low_complexity 1 41 0 2169 105 0 10 chr1 92611949 92612243 -189581421 - AluSx SINE Alu -21 291 1 358 328 25 8 chr1 92612252 92612374 -189581290 + MIR SINE MIR 6 129 -133 7304 231 14 8 chr1 92612502 92614664 -189579000 - L1 LINE L1 -2342 3804 1657 6965 16 0 0 chr1 92614660 92615459 -189578205 - L1PA2 LINE L1 -2 6153 5355 * 3136 128 32 4 chr1 92615459 92616015 -189577649 - L1PBa LINE L1 -4540 2323 1752 1938 164 55 10 chr1 92616175 92616619 -189577045 - MLT2B2 LTR ERVL -2 513 5 277 313 18 27 chr1 92616646 92616758 -189576906 - MIR SINE MIR -74 188 78 265 214 11 11 chr1 92617579 92617668 -189575996 + GA-rich Low_complexity Low_complexity 2 90 0 2540 58 0 10 chr1 92617928 92618241 -189575423 + AluY SINE Alu 1 310 -1 31 26 0 0 chr1 92618795 92618833 -189574831 + AT_rich Low_complexity Low_complexity 1 38 0 536 272 105 0 chr1 92619067 92619258 -189574406 + L1MA9 LINE L1 6064 6274 -38 289 307 89 49 chr1 92619525 92619750 -189573914 + L3 LINE CR1 185 418 -1159 963 281 86 90 chr1 92619768 92620347 -189573317 + L2 LINE L2 1311 1887 -1427 372 265 10 10 chr1 92620349 92620447 -189573217 - MER5B DNA MER1_type -78 100 3 303 385 8 16 chr1 92621216 92621338 -189572326 + MIR SINE MIR 20 140 -68 23 0 0 0 chr1 92622821 92622844 -189570820 + AT_rich Low_complexity Low_complexity 1 23 0 343 221 15 0 chr1 92622924 92622992 -189570672 - L2 LINE L2 0 3272 3204 452 268 80 22 chr1 92623622 92623760 -189569904 + MIR SINE MIR 45 190 -72 199 358 15 0 chr1 92623862 92623929 -189569735 - L2 LINE L2 -14 3299 3232 2264 118 0 10 chr1 92624091 92624404 -189569260 + AluSx SINE Alu 1 310 -2 249 300 17 0 chr1 92624461 92624521 -189569143 + MIR SINE MIR 6 66 -196 600 257 43 43 chr1 92624568 92624650 -189569014 + MIR SINE MIR 74 155 -107 1878 191 101 3 chr1 92624650 92625038 -189568626 + MSTB LTR MaLR 1 426 0 600 257 43 43 chr1 92625038 92625142 -189568522 + MIR SINE MIR 154 260 -2 276 170 0 0 chr1 92625176 92625229 -189568435 + (TG)n Simple_repeat Simple_repeat 2 54 0 355 309 87 16 chr1 92625838 92625964 -189567700 - L2 LINE L2 0 3272 3138 1545 59 0 10 chr1 92626412 92626614 -189567050 + L1PA5 LINE L1 5952 6151 -3 580 356 113 24 chr1 92626987 92627742 -189565922 - L2 LINE L2 -508 2806 1985 468 319 103 5 chr1 92627803 92627988 -189565676 - MIR SINE MIR -32 230 28 288 295 47 31 chr1 92628315 92628444 -189565220 - L2 LINE L2 -3 3269 3139 469 322 45 5 chr1 92628531 92628845 -189564819 + L2 LINE L2 2837 3220 -93 21 57 0 0 chr1 92630123 92630158 -189563506 + AT_rich Low_complexity Low_complexity 1 35 0 776 236 75 24 chr1 92630563 92630775 -189562889 + MER58A DNA MER1_type 1 223 -1 446 222 56 0 chr1 92630852 92630996 -189562668 + MER103 DNA DNA 9 160 -6 2741 144 130 84 chr1 92631694 92632262 -189561402 + Tigger4(Zombi) DNA MER2_type 2 595 -2136 310 210 210 49 chr1 92632590 92632733 -189560931 + L2 LINE L2 3148 3313 0 1471 230 21 6 chr1 92632851 92633182 -189560482 + MER58B DNA MER1_type 6 341 0 25 31 0 0 chr1 92633265 92633297 -189560367 + AT_rich Low_complexity Low_complexity 1 32 0 272 294 60 110 chr1 92634279 92634497 -189559167 - MLT1J LTR MaLR -145 334 95 306 98 0 0 chr1 92636627 92636678 -189556986 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 83 0 0 chr1 92638159 92638219 -189555445 + AT_rich Low_complexity Low_complexity 1 60 0 303 292 41 103 chr1 92639591 92639786 -189553878 + MIR SINE MIR 20 202 -60 277 87 43 0 chr1 92639804 92639850 -189553814 - MADE1 DNA Mariner 0 80 33 619 316 147 11 chr1 92640230 92640578 -189553086 + L3b LINE CR1 1102 1496 -87 392 227 92 43 chr1 92641110 92641301 -189552363 + MLT1J2 LTR MaLR 254 489 -22 223 49 49 0 chr1 92641477 92641518 -189552146 + (TTA)n Simple_repeat Simple_repeat 3 45 0 42112 34 21 2 chr1 92641521 92647483 -189546181 - L1PA3 LINE L1 -20 6135 57 1592 238 23 9 chr1 92647769 92648118 -189545546 - MLT1A1 LTR MaLR -11 354 1 571 271 143 19 chr1 92648552 92648762 -189544902 + MIR SINE MIR 14 249 -13 548 278 82 9 chr1 92648800 92649014 -189544650 - MIR SINE MIR 0 262 35 21 57 0 0 chr1 92649064 92649099 -189544565 + AT_rich Low_complexity Low_complexity 1 35 0 393 293 39 82 chr1 92649762 92649970 -189543694 - MIR3 SINE MIR -2 206 8 397 303 129 0 chr1 92650050 92650182 -189543482 - MIR3 SINE MIR -15 193 45 527 340 52 26 chr1 92650227 92650423 -189543241 - MIR SINE MIR -13 249 45 1755 226 49 16 chr1 92650423 92650870 -189542794 - LTR40b LTR ERVL 0 462 1 527 340 52 26 chr1 92650870 92650905 -189542759 - MIR SINE MIR -217 45 12 355 289 54 27 chr1 92653281 92653430 -189540234 - MIR SINE MIR -19 243 91 490 222 164 6 chr1 92653825 92653996 -189539668 + MIR SINE MIR 64 261 -1 1721 103 56 38 chr1 92654159 92654397 -189539267 + L1MA5A LINE L1 5972 6219 -78 2784 91 3 3 chr1 92654397 92654770 -189538894 + THE1C LTR MaLR 1 373 -2 1721 103 56 38 chr1 92654770 92654851 -189538813 + L1MA5A LINE L1 6219 6297 0 219 36 0 0 chr1 92657035 92657063 -189536601 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 580 311 79 11 chr1 92657745 92657935 -189535729 + MIR SINE MIR 23 225 -37 396 288 67 22 chr1 92658051 92658318 -189535346 + L1ME4a LINE L1 5622 5900 -221 26 0 0 0 chr1 92658761 92658787 -189534877 + AT_rich Low_complexity Low_complexity 1 26 0 1734 185 7 0 chr1 92658787 92659085 -189534579 - AluJo SINE Alu -10 302 3 2310 81 6 38 chr1 92659988 92660308 -189533356 + AluSp SINE Alu 1 310 -3 27 0 0 0 chr1 92660484 92660511 -189533153 + AT_rich Low_complexity Low_complexity 1 27 0 323 266 62 23 chr1 92660609 92660786 -189532878 - L1ME LINE L1 -301 5820 5637 181 267 22 0 chr1 92660865 92660910 -189532754 - L2 LINE L2 -23 3290 3245 1412 260 35 158 chr1 92660924 92661045 -189532619 + L2 LINE L2 1870 2004 -1310 487 44 11 144 chr1 92661045 92661135 -189532529 + MADE1 DNA Mariner 3 80 0 1412 260 35 158 chr1 92661135 92662026 -189531638 + L2 LINE L2 2004 2745 -569 948 105 0 0 chr1 92662026 92662169 -189531495 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 1412 260 35 158 chr1 92662169 92662227 -189531437 + L2 LINE L2 2745 2809 -505 2415 286 112 49 chr1 92665831 92667085 -189526579 + L2 LINE L2 16 1347 -1967 699 306 20 5 chr1 92667161 92667357 -189526307 + MIR SINE MIR 64 262 0 1564 163 0 12 chr1 92667607 92667859 -189525805 + AluJb SINE Alu 54 302 -10 778 186 0 0 chr1 92667859 92667988 -189525676 + AluSx SINE Alu 1 129 -183 285 128 0 0 chr1 92668000 92668047 -189525617 + (TG)n Simple_repeat Simple_repeat 2 48 0 1140 141 0 0 chr1 92668049 92668238 -189525426 + AluSx SINE Alu 125 313 0 1884 163 47 16 chr1 92668568 92668931 -189524733 + THE1C LTR MaLR 2 375 0 388 274 25 45 chr1 92670211 92670368 -189523296 - MIR SINE MIR -2 260 107 2275 91 0 25 chr1 92670368 92670686 -189522978 + AluSg SINE Alu 1 310 0 514 231 8 8 chr1 92671151 92671268 -189522396 - MER94 DNA DNA 0 134 18 1043 246 109 44 chr1 92673894 92674190 -189519474 - L2 LINE L2 0 3313 3037 1905 133 0 51 chr1 92674190 92674554 -189519110 + AluSx SINE Alu 1 312 0 1043 246 109 44 chr1 92674554 92674915 -189518749 - L2 LINE L2 -276 3037 2630 434 260 24 39 chr1 92674925 92675052 -189518612 + MLT2D LTR ERVL 237 361 -53 482 0 17 0 chr1 92675082 92675140 -189518524 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 553 264 0 14 chr1 92675143 92675287 -189518377 - L2 LINE L2 -690 2624 2483 492 280 143 6 chr1 92675780 92675955 -189517709 - MIR SINE MIR -5 257 59 1145 208 26 30 chr1 92676021 92676285 -189517379 + MLT2D LTR ERVL 98 360 -54 308 24 24 0 chr1 92676310 92676351 -189517313 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 285 109 22 0 chr1 92676365 92676411 -189517253 + MLT2D LTR ERVL 368 414 0 622 229 0 0 chr1 92677601 92677723 -189515941 - FRAM SINE Alu -6 170 49 253 261 43 106 chr1 92677732 92677893 -189515771 + MIR3 SINE MIR 3 150 -69 1044 206 31 27 chr1 92677987 92678210 -189515454 + MER58A DNA MER1_type 1 224 0 1071 200 19 30 chr1 92678783 92679048 -189514616 + MIR SINE MIR 1 262 0 230 289 104 44 chr1 92679189 92679324 -189514340 - L2 LINE L2 -6 3307 3165 371 285 29 64 chr1 92679379 92679551 -189514113 - MIR SINE MIR -13 249 84 3948 152 12 49 chr1 92679844 92680017 -189513647 - L1MA7 LINE L1 -5 6286 6108 1478 191 42 17 chr1 92680017 92680305 -189513359 - AluJb SINE Alu -17 295 1 3948 152 12 49 chr1 92680305 92680940 -189512724 - L1MA7 LINE L1 -183 6108 5508 2265 116 0 0 chr1 92681028 92681322 -189512342 - AluSq SINE Alu -19 294 1 455 344 27 16 chr1 92681934 92682120 -189511544 + MER5A DNA MER1_type 1 188 -1 21 0 0 0 chr1 92682561 92682582 -189511082 + AT_rich Low_complexity Low_complexity 1 21 0 351 300 42 88 chr1 92682757 92682997 -189510667 - MIR SINE MIR -16 246 18 216 0 0 0 chr1 92683118 92683142 -189510522 + (T)n Simple_repeat Simple_repeat 1 24 0 1961 210 102 38 chr1 92683152 92683818 -189509846 + LTR1B LTR ERV1 1 751 -75 1536 164 178 0 chr1 92684040 92684344 -189509320 - MSTB LTR MaLR 0 426 69 3656 159 18 9 chr1 92684345 92685500 -189508164 + L1M2 LINE L1 4661 5824 -467 278 49 0 24 chr1 92686286 92686327 -189507337 + (TG)n Simple_repeat Simple_repeat 1 40 0 214 250 80 107 chr1 92687627 92687739 -189505925 + MIR3 SINE MIR 46 154 -54 21 57 0 0 chr1 92687755 92687790 -189505874 + AT_rich Low_complexity Low_complexity 1 35 0 326 306 102 8 chr1 92688629 92688864 -189504800 + MIR SINE MIR 5 261 -1 344 136 0 15 chr1 92689266 92689332 -189504332 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 192 202 48 12 chr1 92689313 92689397 -189504267 + CT-rich Low_complexity Low_complexity 3 89 0 * 29 0 0 0 chr1 92689554 92689583 -189504081 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 92691462 92691485 -189502179 + AT_rich Low_complexity Low_complexity 1 23 0 200 229 16 0 chr1 92691538 92691599 -189502065 + (TA)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr1 92691881 92691903 -189501761 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 92691963 92691993 -189501671 + AT_rich Low_complexity Low_complexity 1 30 0 1571 178 0 73 chr1 92691995 92692309 -189501355 - AluJb SINE Alu -21 291 1 393 327 10 0 chr1 92692401 92692502 -189501162 - L2 LINE L2 -18 3295 3194 363 23 0 0 chr1 92693243 92693287 -189500377 + (TG)n Simple_repeat Simple_repeat 2 45 0 1024 243 4 40 chr1 92693338 92693388 -189500276 - MER58A DNA MER1_type -2197 223 173 1406 90 90 0 chr1 92693388 92693599 -189500065 - MER30 DNA MER1_type 0 230 1 1024 243 4 40 chr1 92693599 92693774 -189499890 - MER58A DNA MER1_type -2247 173 6 1485 193 28 42 chr1 92694112 92694465 -189499199 - MLT1A1 LTR MaLR -17 348 1 268 85 128 21 chr1 92695293 92695340 -189498324 + MLT1C LTR MaLR 1 52 -415 515 278 166 9 chr1 92698592 92698815 -189494849 + MIR SINE MIR 3 260 -2 342 0 0 0 chr1 92699066 92699104 -189494560 + (TG)n Simple_repeat Simple_repeat 1 38 0 2072 117 0 0 chr1 92699107 92699381 -189494283 - AluSx SINE Alu -38 274 1 355 315 84 38 chr1 92699499 92699712 -189493952 + MIR SINE MIR 35 257 -5 416 296 61 10 chr1 92701191 92701391 -189492273 + MIR SINE MIR 38 252 -10 2204 299 305 16 chr1 92701559 92704141 -189489523 + L2 LINE L2 1 3313 0 317 271 23 39 chr1 92704704 92704833 -189488831 + L2 LINE L2 2211 2337 -977 306 366 101 16 chr1 92705279 92705536 -189488128 - L2 LINE L2 -466 2848 2570 1436 194 11 3 chr1 92705615 92705899 -189487765 - AluJo SINE Alu -4 308 23 492 346 126 22 chr1 92705941 92706522 -189487142 - L2 LINE L2 -924 2390 1750 344 285 43 0 chr1 92706557 92706681 -189486983 - MIR SINE MIR -65 143 10 235 341 0 0 chr1 92706862 92706950 -189486714 - L2 LINE L2 -817 2497 2410 676 307 49 4 chr1 92710669 92710894 -189482770 + MIR SINE MIR 25 259 -3 216 343 0 0 chr1 92711316 92711421 -189482243 + A-rich Low_complexity Low_complexity 1 105 0 236 288 73 73 chr1 92711467 92711644 -189482020 - MIR SINE MIR -14 248 72 182 368 69 11 chr1 92712081 92712168 -189481496 - L2 LINE L2 -38 3234 3143 22 80 0 0 chr1 92712186 92712236 -189481428 + AT_rich Low_complexity Low_complexity 1 50 0 597 246 0 11 chr1 92712569 92712754 -189480910 + L1MC/D LINE L1 5270 5451 -711 3877 253 15 22 chr1 92713013 92714153 -189479511 + L1MEc LINE L1 463 1594 -5231 1861 211 22 2 chr1 92714179 92714625 -189479039 - L1P5 LINE L1 -761 5385 4931 1713 111 0 19 chr1 92714625 92714887 -189478777 + L1P5 LINE L1 5393 5649 -507 590 243 149 36 chr1 92714927 92714939 -189478725 + L1MEc LINE L1 1501 1510 -5134 360 0 0 0 chr1 92714939 92714979 -189478685 + (CA)n Simple_repeat Simple_repeat 2 41 0 590 243 149 36 chr1 92714979 92715321 -189478343 + L1MEc LINE L1 1510 2000 -4644 2136 266 54 48 chr1 92715952 92717515 -189476149 + L1ME1 LINE L1 819 2616 -4506 276 271 35 28 chr1 92717529 92717673 -189475991 + L1ME1 LINE L1 2771 2915 -4207 1261 254 89 28 chr1 92717687 92718191 -189475473 + L1ME1 LINE L1 6422 6956 -5 976 227 61 0 chr1 92718484 92718729 -189474935 + MLT1J1 LTR MaLR 13 281 -169 2051 197 35 22 chr1 92720788 92721239 -189472425 + MSTB2 LTR MaLR 1 457 0 296 314 48 9 chr1 92721288 92721393 -189472271 + MIR3 SINE MIR 10 118 -90 187 237 34 17 chr1 92721508 92721567 -189472097 - MIR SINE MIR -150 112 53 925 202 13 61 chr1 92721956 92722184 -189471480 + MER20 DNA MER1_type 3 219 0 261 328 64 8 chr1 92722190 92722315 -189471349 - L2 LINE L2 -9 3304 3173 21 0 0 0 chr1 92727048 92727069 -189466595 + AT_rich Low_complexity Low_complexity 1 21 0 2177 100 0 0 chr1 92727640 92727981 -189465683 + AluSg SINE Alu 1 341 0 195 42 0 0 chr1 92728505 92728529 -189465135 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1971 143 0 29 chr1 92730251 92730565 -189463099 - AluSx SINE Alu -7 305 1 347 303 71 19 chr1 92730919 92731074 -189462590 - MIR SINE MIR -34 228 66 278 271 0 47 chr1 92732843 92732928 -189460736 + CT-rich Low_complexity Low_complexity 4 84 0 355 368 34 91 chr1 92733365 92733716 -189459948 + L2 LINE L2 2941 3271 -1 360 0 0 0 chr1 92733882 92733922 -189459742 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 601 63 0 0 chr1 92733922 92734001 -189459663 + LTR5 LTR ERVK 4 82 -887 697 45 0 0 chr1 92734002 92734090 -189459574 - HERVK LTR ERVK -1950 5293 5206 308 111 0 0 chr1 92734090 92734135 -189459529 - LTR5 LTR ERVK -924 45 1 191 35 0 35 chr1 92734135 92734164 -189459500 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1561 195 0 34 chr1 92734167 92734459 -189459205 - AluJo SINE Alu -30 282 1 223 318 0 34 chr1 92734517 92734605 -189459059 - MIR SINE MIR -72 190 106 1926 137 3 23 chr1 92735349 92735655 -189458009 - AluSx SINE Alu -10 302 3 613 94 85 9 chr1 92737123 92737229 -189456435 + L1PA5 LINE L1 6034 6147 -7 279 265 10 0 chr1 92739151 92739230 -189454434 - L1MC/D LINE L1 -525 5596 5539 264 236 127 18 chr1 92740949 92741059 -189452605 + MIR SINE MIR 66 187 -75 21 0 0 0 chr1 92741649 92741670 -189451994 + AT_rich Low_complexity Low_complexity 1 21 0 5959 149 27 9 chr1 92741677 92743390 -189450274 - L1MA6 LINE L1 -2 6298 4556 334 294 18 9 chr1 92744168 92744314 -189449350 + ALR/Alpha Satellite centromeric 1 147 -43 24466 167 20 27 chr1 92744399 92745514 -189448150 - L1PA10 LINE L1 -3 6480 5359 2149 107 16 10 chr1 92745514 92745822 -189447842 - AluSg SINE Alu 0 310 1 24466 167 20 27 chr1 92745822 92751221 -189442443 - L1PA10 LINE L1 -1124 5359 10 264 178 0 0 chr1 92751222 92751267 -189442397 - L1P LINE L1 -6099 47 3 524 340 45 10 chr1 92751430 92751630 -189442034 + MIR SINE MIR 8 214 -48 2553 192 55 81 chr1 92752603 92753316 -189440348 + LTR8A LTR ERV1 34 727 0 195 100 0 0 chr1 92755172 92755202 -189438462 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 434 286 24 0 chr1 92756103 92756251 -189437413 - MIR SINE MIR -12 250 99 300 53 0 0 chr1 92756466 92756504 -189437160 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 387 278 222 37 chr1 92756506 92756884 -189436780 - L2 LINE L2 -9 3304 2857 232 317 144 0 chr1 92757177 92757281 -189436383 - MIR SINE MIR -133 129 11 223 24 24 49 chr1 92757297 92757338 -189436326 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 569 219 39 16 chr1 92759584 92759712 -189433952 - MSTC LTR MaLR -297 131 1 * 745 282 33 42 chr1 92759712 92759931 -189433733 - MER69 DNA AcHobo -2309 217 1 258 143 20 0 chr1 92759942 92759991 -189433673 + HAL1 LINE L1 2124 2173 -334 329 268 10 21 chr1 92760025 92760122 -189433542 + HsTC2 DNA Tc2 39 134 -1764 1713 181 10 19 chr1 92760137 92760447 -189433217 + AluJb SINE Alu 1 307 -5 36139 33 12 1 chr1 92760659 92766658 -189427006 + L1PA3 LINE L1 3 6147 -8 1085 240 82 10 chr1 92766661 92767053 -189426611 + HsTC2 DNA Tc2 1479 1898 0 383 227 85 14 chr1 92767053 92767194 -189426470 + HAL1 LINE L1 2181 2331 -176 779 140 0 0 chr1 92767194 92767308 -189426356 - MLT1B LTR MaLR 0 390 277 660 275 220 2 chr1 92767325 92767725 -189425939 - L2 LINE L2 -1631 1683 1197 302 313 104 31 chr1 92767753 92767945 -189425719 - L2 LINE L2 -818 2496 2291 7850 16 0 0 chr1 92768496 92769785 -189423879 + L1PA3 LINE L1 4864 6152 -3 30 0 0 0 chr1 92769785 92769815 -189423849 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 92770261 92770289 -189423375 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 92770343 92770364 -189423300 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr1 92770401 92770452 -189423212 + AT_rich Low_complexity Low_complexity 1 51 0 685 275 81 42 chr1 92771072 92771308 -189422356 + MIR SINE MIR 2 246 -16 2064 141 3 3 chr1 92771535 92771848 -189421816 - AluSp SINE Alu 0 313 1 454 333 28 99 chr1 92772002 92772373 -189421291 - L2 LINE L2 -1 3271 2933 2204 92 0 3 chr1 92772373 92772696 -189420968 + AluSq SINE Alu 1 322 0 454 333 28 99 chr1 92772696 92772755 -189420909 - L2 LINE L2 -339 2933 2871 * 479 305 38 54 chr1 92772749 92772988 -189420676 + MIR SINE MIR 11 245 -17 2350 126 22 0 chr1 92772993 92773351 -189420313 + MER47A DNA MER2_type 1 366 0 386 394 62 4 chr1 92773420 92773661 -189420003 - L2 LINE L2 -597 2717 2463 1997 111 3 3 chr1 92774003 92774300 -189419364 + L1PA13 LINE L1 5861 6157 -6 3478 120 27 12 chr1 92774548 92775066 -189418598 - MER1A DNA MER1_type -1 526 1 284 158 18 0 chr1 92775699 92775756 -189417908 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1796 238 122 30 chr1 92775769 92776341 -189417323 - MLT1E2 LTR MaLR -1 625 1 186 378 60 0 chr1 92778082 92778233 -189415431 + MIR SINE MIR 102 261 -1 4221 136 40 3 chr1 92779153 92779835 -189413829 - MER39 LTR ERV1 0 707 1 317 344 20 33 chr1 92780787 92780938 -189412726 - MIR3 SINE MIR -6 202 54 2187 112 3 0 chr1 92782183 92782477 -189411187 + AluSx SINE Alu 3 297 -15 687 290 59 8 chr1 92782677 92782915 -189410749 + MIR SINE MIR 13 262 0 182 309 88 37 chr1 92783507 92783643 -189410021 + MIR SINE MIR 93 235 -27 418 221 164 0 chr1 92783890 92784012 -189409652 + LTR33 LTR ERVL 1 142 -379 256 202 22 45 chr1 92784177 92784266 -189409398 + LTR33 LTR ERVL 427 513 -8 2207 132 18 6 chr1 92784892 92785375 -189408289 + L1PA16 LINE L1 5595 6164 -2 2175 116 0 3 chr1 92785395 92785698 -189407966 + AluSx SINE Alu 1 302 -10 261 211 0 0 chr1 92786310 92786367 -189407297 + L1MC4 LINE L1 6653 6709 -1333 2190 84 35 0 chr1 92786666 92786951 -189406713 + AluSp SINE Alu 1 295 -18 23 0 0 0 chr1 92786951 92786974 -189406690 + AT_rich Low_complexity Low_complexity 1 23 0 234 188 0 43 chr1 92787399 92787468 -189406196 + A-rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr1 92789480 92789513 -189404151 + AT_rich Low_complexity Low_complexity 1 33 0 758 368 58 22 chr1 92789740 92790294 -189403370 + L2 LINE L2 2184 2757 -557 2025 110 11 0 chr1 92790550 92790832 -189402832 - AluSx SINE Alu -27 285 1 304 308 0 0 chr1 92791031 92791109 -189402555 + L2 LINE L2 3195 3272 0 2704 309 106 28 chr1 92791700 92793028 -189400636 + L2 LINE L2 1617 3074 -239 2560 116 6 0 chr1 92793028 92793390 -189400274 - THE1B LTR MaLR 0 364 1 2704 309 106 28 chr1 92793390 92793472 -189400192 + L2 LINE L2 3074 3148 -165 511 261 39 20 chr1 92793478 92793631 -189400033 - MIR SINE MIR -21 241 86 686 234 11 43 chr1 92793685 92793869 -189399795 + L2 LINE L2 3136 3313 0 395 370 74 16 chr1 92794155 92794412 -189399252 + L2 LINE L2 1752 2023 -1291 732 264 14 109 chr1 92796218 92796502 -189397162 + MLT1J2 LTR MaLR 4 260 -190 194 303 0 66 chr1 92796662 92796738 -189396926 - L3 LINE CR1 -912 665 595 642 221 0 0 chr1 92798010 92798132 -189395532 - FLAM_C SINE Alu -21 122 1 381 242 83 55 chr1 92799422 92799503 -189394161 + MIR SINE MIR 16 102 -128 1157 249 71 34 chr1 92799503 92799853 -189393811 - MLT1A1 LTR MaLR -2 363 1 381 242 83 55 chr1 92799853 92799922 -189393742 + MIR SINE MIR 102 168 -62 787 261 92 58 chr1 92801463 92801995 -189391669 + L1ME4a LINE L1 5502 6051 -70 426 250 10 10 chr1 92802077 92802181 -189391483 + L2 LINE L2 3210 3313 0 230 333 37 25 chr1 92802429 92802510 -189391154 - L2 LINE L2 0 3313 3232 1020 305 95 37 chr1 92802542 92802972 -189390692 + LTR67 LTR ERVL 22 476 -81 1152 331 176 8 chr1 92803032 92803993 -189389671 + L2 LINE L2 754 1875 -1439 981 292 108 10 chr1 92803993 92804606 -189389058 + L2 LINE L2 2633 3310 -3 225 0 0 0 chr1 92805472 92805497 -189388167 + (TG)n Simple_repeat Simple_repeat 2 26 0 1915 160 36 0 chr1 92805878 92806210 -189387454 - MER7A DNA MER2_type -4 342 1 504 343 131 11 chr1 92806315 92806848 -189386816 - MLT1L LTR MaLR -18 597 1 311 258 30 68 chr1 92807062 92807194 -189386470 + MIR SINE MIR 80 206 -56 208 309 12 0 chr1 92807689 92807770 -189385894 + (CA)n Simple_repeat Simple_repeat 1 82 0 349 355 13 33 chr1 92808429 92808581 -189385083 + L2 LINE L2 2550 2698 -616 2220 95 30 0 chr1 92808909 92809204 -189384460 - AluSx SINE Alu -8 304 1 1949 165 138 76 chr1 92809233 92809718 -189383946 + MLT2B2 LTR ERVL 1 515 0 241 299 126 11 chr1 92813077 92813164 -189380500 + MIR3 SINE MIR 87 183 -25 229 194 111 56 chr1 92813200 92813272 -189380392 + MIR SINE MIR 105 180 -82 180 179 0 0 chr1 92813318 92813357 -189380307 + (CAT)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 92813480 92813502 -189380162 + AT_rich Low_complexity Low_complexity 1 22 0 197 257 0 0 chr1 92814183 92814218 -189379446 - L2 LINE L2 -18 3254 3220 230 286 209 0 chr1 92814220 92814325 -189379339 - L2 LINE L2 0 3313 3187 1273 203 52 87 chr1 92814547 92814951 -189378713 - MLT1B LTR MaLR 0 390 1 350 297 112 67 chr1 92815077 92815629 -189378035 - L2 LINE L2 -557 2757 2181 408 20 0 0 chr1 92816219 92816268 -189377396 + (CA)n Simple_repeat Simple_repeat 2 50 0 244 278 0 128 chr1 92816384 92816517 -189377147 - L2 LINE L2 0 3313 3198 2423 176 33 15 chr1 92816543 92817061 -189376603 - L1MA9 LINE L1 -5 6307 5781 834 182 0 0 chr1 92817122 92817270 -189376394 - L1MA9 LINE L1 -519 5793 5646 2060 135 3 0 chr1 92818782 92819078 -189374586 - AluSx SINE Alu -15 297 1 245 269 0 0 chr1 92819669 92819721 -189373943 - L2 LINE L2 -4 3309 3258 836 275 36 29 chr1 92820695 92820971 -189372693 + LTR16A LTR ERVL 1 278 -172 861 264 117 44 chr1 92820989 92821512 -189372152 - L1MC4 LINE L1 -69 7973 7413 1925 195 26 29 chr1 92821819 92822234 -189371430 + MLT2D LTR ERVL 1 414 0 283 310 9 9 chr1 92822242 92822355 -189371309 - L1 LINE L1 -1146 5000 4888 2105 102 0 0 chr1 92822357 92822631 -189371033 + AluSg SINE Alu 25 298 -12 1670 237 156 16 chr1 92823043 92823658 -189370006 - L1ME2 LINE L1 -19 6145 5445 862 330 67 42 chr1 92823665 92824338 -189369326 - L1 LINE L1 -1442 4704 4015 205 104 0 42 chr1 92824419 92824467 -189369197 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 447 287 108 25 chr1 92824509 92824917 -189368747 - L1 LINE L1 -2180 3966 3525 2313 99 0 0 chr1 92825008 92825312 -189368352 - AluSx SINE Alu -8 304 1 22 35 0 0 chr1 92825454 92825483 -189368181 + AT_rich Low_complexity Low_complexity 1 29 0 750 309 72 68 chr1 92825490 92826380 -189367284 - L1 LINE L1 -2938 3208 2316 22 0 0 0 chr1 92826490 92826512 -189367152 + AT_rich Low_complexity Low_complexity 1 22 0 352 295 51 30 chr1 92827066 92827303 -189366361 - HAL1b LINE L1 -441 907 666 597 225 61 76 chr1 92827323 92827665 -189365999 - HAL1b LINE L1 -736 612 276 21 57 0 0 chr1 92827998 92828033 -189365631 + AT_rich Low_complexity Low_complexity 1 35 0 708 167 0 17 chr1 92829205 92829325 -189364339 - MER5A DNA MER1_type -71 118 1 1141 182 15 2 chr1 92830397 92830682 -189362982 - MER2 DNA MER2_type 0 345 1 252 208 160 0 chr1 92830749 92830855 -189362809 - L1ME3A LINE L1 -214 5956 5834 456 259 94 0 chr1 92830857 92831027 -189362637 - L1ME3A LINE L1 -602 5568 5383 * 1073 247 128 45 chr1 92831020 92831463 -189362201 - L1ME3A LINE L1 -2647 3499 3094 1734 211 30 45 chr1 92831463 92831865 -189361799 + MSTD LTR MaLR 1 396 0 1073 247 128 45 chr1 92831865 92832439 -189361225 - L1ME3A LINE L1 -3052 3094 2398 1824 194 20 38 chr1 92832719 92833111 -189360553 - MLT1B LTR MaLR -5 385 1 781 313 88 6 chr1 92833723 92834052 -189359612 + MLT1J2 LTR MaLR 73 428 -22 339 294 94 56 chr1 92834497 92834580 -189359084 - MIR SINE MIR -2 260 182 423 0 0 0 chr1 92834580 92834627 -189359037 + (TA)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chr1 92834626 92834647 -189359017 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 339 294 94 56 chr1 92834627 92834649 -189359015 - MIR SINE MIR -80 182 162 1695 159 0 18 chr1 92834649 92834926 -189358738 - AluJo SINE Alu -38 274 3 339 294 94 56 chr1 92834926 92834999 -189358665 - MIR SINE MIR -100 162 95 1563 212 3 3 chr1 92835216 92835522 -189358142 - AluJo SINE Alu -6 306 1 24 32 0 0 chr1 92836061 92836092 -189357572 + AT_rich Low_complexity Low_complexity 1 31 0 190 333 143 33 chr1 92837582 92837792 -189355872 + MIR SINE MIR 14 246 -16 234 0 0 0 chr1 92837802 92837828 -189355836 + (GA)n Simple_repeat Simple_repeat 1 26 0 2430 43 0 46 chr1 92837870 92838196 -189355468 + AluY SINE Alu 1 311 0 236 54 54 0 chr1 92839168 92839205 -189354459 + A-rich Low_complexity Low_complexity 2 40 0 2050 134 0 0 chr1 92839957 92840249 -189353415 + AluSx SINE Alu 21 312 0 3072 157 27 85 chr1 92840454 92841187 -189352477 + LTR8 LTR ERV1 1 691 0 2355 86 0 10 chr1 92842377 92842679 -189350985 + AluSx SINE Alu 1 299 -13 2105 247 42 45 chr1 92844094 92845148 -189348516 - LTR27 LTR ERV1 0 1735 3 424 285 66 13 chr1 92845341 92845492 -189348172 - MIR3 SINE MIR -3 205 47 335 320 60 52 chr1 92845526 92845719 -189347945 + MIR3 SINE MIR 1 202 -6 2062 125 30 3 chr1 92846595 92846890 -189346774 - AluSx SINE Alu -9 303 1 334 195 39 31 chr1 92848729 92848857 -189344807 + (TTATA)n Simple_repeat Simple_repeat 3 131 0 605 291 43 26 chr1 92850597 92850766 -189342898 + MIR SINE MIR 19 195 -67 2110 183 12 20 chr1 92850766 92851165 -189342499 + MSTD LTR MaLR 1 396 0 605 291 43 26 chr1 92851165 92851225 -189342439 + MIR SINE MIR 195 252 -10 356 316 36 36 chr1 92851323 92851462 -189342202 - MIR3 SINE MIR -62 146 8 261 98 0 0 chr1 92852654 92852695 -189340969 + (A)n Simple_repeat Simple_repeat 1 41 0 27 81 0 0 chr1 92853225 92853287 -189340377 + AT_rich Low_complexity Low_complexity 1 62 0 1907 142 0 24 chr1 92853891 92854187 -189339477 + AluSx SINE Alu 5 293 -19 1733 310 46 39 chr1 92854287 92855257 -189338407 - L1PA12 LINE L1 -4985 2013 9 261 178 0 0 chr1 92855257 92855302 -189338362 - L1P LINE L1 -6099 47 3 526 340 45 10 chr1 92855465 92855665 -189337999 + MIR SINE MIR 8 214 -48 2512 194 56 80 chr1 92856638 92857349 -189336315 + LTR8A LTR ERV1 34 727 0 23 0 0 0 chr1 92857402 92857425 -189336239 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chr1 92859204 92859234 -189334430 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 434 286 24 0 chr1 92860137 92860285 -189333379 - MIR SINE MIR -12 250 99 285 29 0 0 chr1 92860500 92860534 -189333130 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 387 278 222 37 chr1 92860536 92860914 -189332750 - L2 LINE L2 -9 3304 2857 232 317 144 0 chr1 92861207 92861311 -189332353 - MIR SINE MIR -133 129 11 223 24 24 49 chr1 92861327 92861368 -189332296 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 187 381 27 0 chr1 92862499 92862584 -189331080 - MER5B DNA MER1_type -23 166 69 587 225 43 14 chr1 92863604 92863742 -189329922 - MSTC LTR MaLR -286 142 1 * 745 282 33 42 chr1 92863742 92863961 -189329703 - MER69 DNA AcHobo -2309 217 1 274 143 20 0 chr1 92863972 92864021 -189329643 + HAL1 LINE L1 2124 2173 -334 329 240 107 33 chr1 92864031 92864152 -189329512 + HsTC2 DNA Tc2 5 134 -1764 1723 181 10 19 chr1 92864167 92864477 -189329187 + AluJb SINE Alu 1 307 -5 43862 33 21 1 chr1 92864689 92870717 -189322947 + L1PA2 LINE L1 3 6155 0 27 0 0 0 chr1 92870717 92870744 -189322920 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr1 92871190 92871218 -189322446 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 92871272 92871293 -189322371 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr1 92871330 92871381 -189322283 + AT_rich Low_complexity Low_complexity 1 51 0 662 275 81 42 chr1 92872002 92872238 -189321426 + MIR SINE MIR 2 246 -16 2080 141 3 3 chr1 92872465 92872778 -189320886 - AluSp SINE Alu 0 313 1 445 331 28 99 chr1 92872932 92873303 -189320361 - L2 LINE L2 -1 3271 2933 2204 95 0 3 chr1 92873303 92873631 -189320033 + AluSq SINE Alu 1 327 0 445 331 28 99 chr1 92873631 92873690 -189319974 - L2 LINE L2 -339 2933 2871 * 468 305 38 54 chr1 92873684 92873923 -189319741 + MIR SINE MIR 11 245 -17 2523 126 22 0 chr1 92873928 92874286 -189319378 + MER47A DNA MER2_type 1 366 0 356 403 62 4 chr1 92874355 92874596 -189319068 - L2 LINE L2 -597 2717 2463 2142 116 3 3 chr1 92874938 92875241 -189318423 + L1PA13 LINE L1 5861 6163 0 3718 122 27 12 chr1 92875483 92876001 -189317663 - MER1A DNA MER1_type -1 526 1 284 158 18 0 chr1 92876630 92876687 -189316977 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 2010 236 122 30 chr1 92876700 92877272 -189316392 - MLT1E2 LTR MaLR -1 625 1 4524 139 40 3 chr1 92880084 92880766 -189312898 - MER39 LTR ERV1 0 707 1 294 368 22 0 chr1 92881733 92881869 -189311795 - MIR3 SINE MIR -16 192 54 2148 125 3 0 chr1 92883112 92883408 -189310256 + AluSx SINE Alu 1 297 -15 674 290 59 8 chr1 92883608 92883846 -189309818 + MIR SINE MIR 13 262 0 837 158 0 0 chr1 92884748 92884887 -189308777 + AluSg/x SINE Alu 168 306 -4 1717 189 28 9 chr1 92884963 92885286 -189308378 - LTR26B LTR ERV1 0 531 203 2317 86 0 3 chr1 92885303 92885594 -189308070 - AluSc SINE Alu -19 290 1 199 310 14 42 chr1 92885595 92885666 -189307998 - MER5A DNA MER1_type -113 76 8 2160 106 7 0 chr1 92885734 92886036 -189307628 - AluSx SINE Alu 0 305 2 578 237 69 55 chr1 92886609 92886832 -189306832 + MIR SINE MIR 10 232 -30 287 233 54 93 chr1 92887100 92887229 -189306435 + L2 LINE L2 3189 3312 -1 207 332 83 36 chr1 92887369 92887562 -189306102 - L2 LINE L2 -544 2770 2569 2232 118 0 0 chr1 92888052 92888348 -189305316 + AluSx SINE Alu 1 296 -16 2895 88 0 3 chr1 92888457 92888832 -189304832 - MER9 LTR ERVK -137 374 1 3385 97 25 0 chr1 92890016 92890461 -189303203 + L1PA10 LINE L1 5698 6153 -15 3941 268 42 2 chr1 92890477 92891341 -189302323 - L1M4 LINE L1 -1286 4860 3932 210 37 0 0 chr1 92891341 92891368 -189302296 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3941 268 42 2 chr1 92891368 92891702 -189301962 - L1M4 LINE L1 -2214 3932 3613 727 130 0 19 chr1 92891802 92891901 -189301763 + AluSg/x SINE Alu 193 291 -19 1676 128 140 0 chr1 92891901 92892166 -189301498 - AluSx SINE Alu -10 302 1 215 319 0 14 chr1 92892324 92892393 -189301271 + L2 LINE L2 3246 3313 0 2316 99 0 3 chr1 92893517 92893819 -189299845 + AluSc SINE Alu 1 301 -8 616 307 32 5 chr1 92894993 92895182 -189298482 + MLT1I LTR MaLR 204 397 -12 1505 104 0 74 chr1 92896346 92896576 -189297088 + AluSg/x SINE Alu 83 295 -15 411 316 8 0 chr1 92898537 92898654 -189295010 + MIR3 SINE MIR 88 205 -3 626 280 75 0 chr1 92899453 92899639 -189294025 - MIR SINE MIR -2 260 61 2109 107 0 4 chr1 92899680 92900025 -189293639 + AluSg SINE Alu 1 344 0 859 260 22 5 chr1 92900082 92900305 -189293359 - MIR SINE MIR -16 246 20 2622 104 16 13 chr1 92900620 92900994 -189292670 - THE1C LTR MaLR 0 375 1 11182 111 24 20 chr1 92900994 92902569 -189291095 - THE1C-int LTR MaLR 0 1580 1 2621 104 33 11 chr1 92902571 92902936 -189290728 - THE1C LTR MaLR -2 373 1 1839 150 41 142 chr1 92903235 92903924 -189289740 + MER4A LTR ERV1 3 465 0 1006 289 167 44 chr1 92904268 92904368 -189289296 + L2 LINE L2 2070 2156 -1157 1665 176 10 10 chr1 92904368 92904664 -189289000 - AluJb SINE Alu -16 296 1 1006 289 167 44 chr1 92904664 92905093 -189288571 + L2 LINE L2 2156 2531 -782 2179 170 65 31 chr1 92905093 92905511 -189288153 - MSTB1 LTR MaLR 0 432 1 1006 289 167 44 chr1 92905511 92906000 -189287664 + L2 LINE L2 2531 3223 -90 2148 76 29 11 chr1 92906012 92906396 -189287268 - LTR7 LTR ERV1 -15 435 1 2642 109 5 13 chr1 92906396 92906789 -189286875 - HERVH LTR ERV1 0 7713 7324 1458 98 36 9 chr1 92906789 92907013 -189286651 - HERVH LTR ERV1 -1894 5819 5590 * 6292 122 12 1 chr1 92907004 92907923 -189285741 - HERVH LTR ERV1 -2564 5149 4221 1914 151 5 5 chr1 92907921 92908229 -189285435 - HERVH LTR ERV1 -3423 4290 3995 * 1523 155 4 4 chr1 92908239 92908484 -189285180 - HERVH LTR ERV1 -3977 3736 3492 821 136 79 0 chr1 92908474 92908614 -189285050 - HERVH LTR ERV1 -4423 3290 3140 * 16634 132 39 39 chr1 92908593 92911589 -189282075 - HERVH LTR ERV1 -4718 2995 1 2808 86 134 2 chr1 92911591 92911987 -189281677 - LTR7 LTR ERV1 -2 448 1 378 273 109 0 chr1 92912685 92912795 -189280869 + MIR SINE MIR 68 189 -73 189 0 0 0 chr1 92912803 92912824 -189280840 + (TA)n Simple_repeat Simple_repeat 1 21 0 257 296 45 11 chr1 92912839 92912927 -189280737 + MIR SINE MIR 20 110 -152 296 257 28 22 chr1 92914931 92915036 -189278628 - MIR SINE MIR -37 171 62 246 213 88 25 chr1 92915793 92915873 -189277791 + LTR50 LTR ERVL 17 101 -694 862 339 60 10 chr1 92916050 92916463 -189277201 + ERVL LTR ERVL 4127 4560 -1204 882 189 0 13 chr1 92916591 92916744 -189276920 - Tigger3b DNA MER2_type 0 1231 1081 * 4703 145 48 22 chr1 92916737 92917606 -189276058 - Tigger3b DNA MER2_type -339 892 1 3804 274 45 26 chr1 92917609 92919117 -189274547 - ERVL LTR ERVL -429 5335 3767 2852 146 12 8 chr1 92919438 92919918 -189273746 + L1PA16 LINE L1 5685 6166 0 354 100 0 0 chr1 92919965 92920025 -189273639 + (GA)n Simple_repeat Simple_repeat 1 60 0 679 239 46 35 chr1 92920027 92920256 -189273408 + MLT1H1 LTR MaLR 299 570 -23 21 57 0 0 chr1 92920945 92920980 -189272684 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 92921011 92921048 -189272616 + AT_rich Low_complexity Low_complexity 1 37 0 313 241 52 12 chr1 92921545 92921664 -189272000 - L1ME LINE L1 -352 5817 5691 874 302 36 4 chr1 92922669 92922944 -189270720 - ERVL LTR ERVL -2306 3458 3175 362 302 67 13 chr1 92923625 92923774 -189269890 + L3 LINE CR1 1409 1565 -12 210 167 0 0 chr1 92923953 92923989 -189269675 + (TA)n Simple_repeat Simple_repeat 2 37 0 660 254 18 74 chr1 92924680 92924964 -189268700 - L1ME2 LINE L1 0 6164 5897 255 341 75 4 chr1 92925660 92925823 -189267841 + MIR SINE MIR 18 139 -69 6997 65 6 1 chr1 92926215 92927632 -189266032 - L1PA8 LINE L1 -2 6170 4751 2009 124 28 0 chr1 92927748 92928038 -189265626 + AluSx SINE Alu 1 298 -14 261 0 0 0 chr1 92928340 92928369 -189265295 + (TG)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 92928710 92928735 -189264929 + AT_rich Low_complexity Low_complexity 1 25 0 267 263 101 0 chr1 92929728 92929827 -189263837 + L1MCc LINE L1 47 155 -6284 275 253 63 58 chr1 92929915 92930105 -189263559 + L1MCc LINE L1 282 472 -5967 23 0 0 0 chr1 92930250 92930273 -189263391 + AT_rich Low_complexity Low_complexity 1 23 0 326 263 69 50 chr1 92930517 92930677 -189262987 + L1MCc LINE L1 1145 1307 -5132 389 261 43 61 chr1 92930683 92930848 -189262816 + L1MCc LINE L1 1378 1535 -5324 21 110 0 0 chr1 92931516 92931607 -189262057 + AT_rich Low_complexity Low_complexity 1 91 0 297 306 202 0 chr1 92931805 92931929 -189261735 + MIR SINE MIR 53 201 -61 333 0 0 0 chr1 92931961 92931998 -189261666 + (CAT)n Simple_repeat Simple_repeat 3 39 0 216 0 0 0 chr1 92932279 92932303 -189261361 + (TG)n Simple_repeat Simple_repeat 1 24 0 695 221 47 52 chr1 92934138 92934310 -189259354 - MER20 DNA MER1_type -48 171 1 207 100 0 0 chr1 92934600 92934630 -189259034 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 869 255 129 9 chr1 92936421 92936739 -189256925 - L1ME3A LINE L1 -14 6225 5870 779 290 113 7 chr1 92936756 92937154 -189256510 - L1ME3A LINE L1 -447 5792 5354 933 280 49 76 chr1 92937180 92938323 -189255341 - L1ME3A LINE L1 -883 5332 2320 365 241 128 92 chr1 92938329 92938657 -189255007 - L1ME3A LINE L1 -4058 2338 1999 524 307 118 34 chr1 92938807 92939624 -189254040 - L1ME3A LINE L1 -4634 1762 878 560 14 14 0 chr1 92939698 92939767 -189253897 + (TCTA)n Simple_repeat Simple_repeat 2 71 0 1629 192 6 3 chr1 92940080 92940403 -189253261 + L1MA4 LINE L1 5963 6286 -14 1445 246 47 29 chr1 92940556 92940803 -189252861 - Charlie4a DNA MER1_type -1455 506 265 1528 189 55 114 chr1 92940803 92940846 -189252818 - MLT2D LTR ERVL 0 414 370 222 37 0 0 chr1 92940846 92940873 -189252791 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 306 0 0 0 chr1 92940872 92940906 -189252758 + (GA)n Simple_repeat Simple_repeat 1 34 0 1528 189 55 114 chr1 92940873 92941197 -189252467 - MLT2D LTR ERVL -44 370 110 2107 111 0 7 chr1 92941197 92941503 -189252161 + AluSc SINE Alu 3 306 -3 1528 189 55 114 chr1 92941503 92941607 -189252057 - MLT2D LTR ERVL -304 110 1 1445 246 47 29 chr1 92941607 92941850 -189251814 - Charlie4a DNA MER1_type -1696 265 7 479 302 78 28 chr1 92941968 92942147 -189251517 - MIR SINE MIR -56 206 19 21 0 0 0 chr1 92942380 92942401 -189251263 + AT_rich Low_complexity Low_complexity 1 21 0 2133 126 0 0 chr1 92942412 92942713 -189250951 - AluSg SINE Alu -9 301 1 24 32 0 0 chr1 92943230 92943261 -189250403 + AT_rich Low_complexity Low_complexity 1 31 0 723 289 60 15 chr1 92943312 92943578 -189250086 - MLT1E2 LTR MaLR -146 480 203 375 177 0 0 chr1 92943701 92943763 -189249901 + L2 LINE L2 3211 3272 0 313 356 15 0 chr1 92944375 92944507 -189249157 - MER69A DNA AcHobo -43 134 1 272 89 0 22 chr1 92946180 92946225 -189247439 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1750 158 47 7 chr1 92946403 92946701 -189246963 + AluJo SINE Alu 1 310 -2 835 229 38 30 chr1 92946851 92947087 -189246577 - L1PB4 LINE L1 -7 6149 5912 6904 52 14 9 chr1 92948617 92949573 -189244091 + L1PA7 LINE L1 5190 6149 -5 335 320 46 81 chr1 92951004 92951201 -189242463 + MIR3 SINE MIR 14 203 -5 244 268 56 63 chr1 92951889 92952031 -189241633 + MER5B DNA MER1_type 2 142 -36 242 254 0 17 chr1 92952449 92952508 -189241156 + MIR SINE MIR 83 140 -68 261 269 67 52 chr1 92952566 92952700 -189240964 - MIR SINE MIR -3 259 124 2958 286 91 14 chr1 92952796 92954100 -189239564 + HAL1 LINE L1 116 1519 -988 834 237 0 21 chr1 92955288 92955474 -189238190 + MER5A DNA MER1_type 1 182 -7 265 276 0 0 chr1 92955724 92955782 -189237882 + MLT2B2 LTR ERVL 1 58 -457 3713 67 2 0 chr1 92956198 92956674 -189236990 - L1PA7 LINE L1 0 6154 5678 497 291 25 41 chr1 92958291 92958487 -189235177 + MIR SINE MIR 45 237 -25 228 278 99 85 chr1 92959659 92959871 -189233793 + MIR SINE MIR 45 259 -3 270 399 24 18 chr1 92959880 92960048 -189233616 + L2 LINE L2 3102 3270 -2 267 152 0 0 chr1 92960683 92960729 -189232935 + CT-rich Low_complexity Low_complexity 2 47 0 415 229 64 28 chr1 92960729 92960838 -189232826 - FLAM_A SINE Alu -20 113 1 2068 240 41 28 chr1 92960841 92961559 -189232105 - L1ME2 LINE L1 -256 6188 5464 1169 170 56 105 chr1 92961565 92961871 -189231793 + MLT2C1 LTR ERVL 2 292 -105 28 0 0 0 chr1 92961871 92961899 -189231765 + AT_rich Low_complexity Low_complexity 1 28 0 495 228 87 5 chr1 92961987 92962171 -189231493 - L1ME2 LINE L1 -1669 4757 4559 889 217 94 14 chr1 92962174 92962532 -189231132 - MLT1D LTR MaLR -7 498 22 297 109 0 0 chr1 92962532 92962587 -189231077 + (TG)n Simple_repeat Simple_repeat 2 56 0 889 217 94 14 chr1 92962587 92962611 -189231053 - MLT1D LTR MaLR -483 22 1 1284 280 89 46 chr1 92962640 92963896 -189229768 - L1ME2 LINE L1 -3943 2664 1162 363 239 8 98 chr1 92964032 92964209 -189229455 + L1 LINE L1 3106 3291 -2855 22 35 0 0 chr1 92964224 92964253 -189229411 + AT_rich Low_complexity Low_complexity 1 29 0 742 71 0 0 chr1 92964395 92964494 -189229170 + AluS SINE Alu 1 99 -213 322 339 55 37 chr1 92965094 92965312 -189228352 + MIR SINE MIR 5 226 -36 188 373 56 8 chr1 92965397 92965523 -189228141 - L2 LINE L2 -17 3296 3165 243 345 127 0 chr1 92965707 92965817 -189227847 - L2 LINE L2 0 3272 3149 671 214 0 0 chr1 92965943 92966069 -189227595 + FLAM_C SINE Alu 1 126 -7 292 207 17 0 chr1 92967966 92968024 -189225640 + AluJ/monomer SINE Alu 238 296 -6 22 35 0 0 chr1 92968031 92968060 -189225604 + AT_rich Low_complexity Low_complexity 1 29 0 287 148 0 33 chr1 92968293 92968354 -189225310 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 379 309 113 18 chr1 92968534 92968702 -189224962 - MIR SINE MIR -7 255 72 21 57 0 0 chr1 92968839 92968874 -189224790 + AT_rich Low_complexity Low_complexity 1 35 0 365 315 94 46 chr1 92969056 92969275 -189224389 - MIR SINE MIR -7 255 22 26 30 0 0 chr1 92969741 92969774 -189223890 + AT_rich Low_complexity Low_complexity 1 33 0 234 379 63 11 chr1 92970250 92970345 -189223319 - L2 LINE L2 -31 3241 3142 2039 138 24 6 chr1 92970366 92970707 -189222957 + MER47A DNA MER2_type 20 366 0 180 77 0 0 chr1 92970814 92970840 -189222824 + (GA)n Simple_repeat Simple_repeat 2 27 0 330 284 56 33 chr1 92970907 92971126 -189222538 - L1M4 LINE L1 -467 5697 5473 1368 197 47 89 chr1 92971353 92971565 -189222099 + MLT1A1 LTR MaLR 1 191 -174 2111 38 0 27 chr1 92971565 92971827 -189221837 - AluY SINE Alu 0 311 57 1368 197 47 89 chr1 92971827 92971995 -189221669 + MLT1A1 LTR MaLR 191 365 0 369 237 136 30 chr1 92972061 92972259 -189221405 - L1MEd LINE L1 -5303 816 598 360 251 31 0 chr1 92973249 92973355 -189220309 + L1MC5 LINE L1 6697 6795 -1166 275 24 0 49 chr1 92974481 92974522 -189219142 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 299 152 0 0 chr1 92975945 92975991 -189217673 + L2 LINE L2 3263 3308 -5 707 167 56 162 chr1 92976515 92976650 -189217014 + MER3 DNA MER1_type 1 102 -107 2268 106 16 47 chr1 92976650 92977036 -189216628 - THE1C LTR MaLR -1 374 1 707 167 56 162 chr1 92977036 92977134 -189216530 + MER3 DNA MER1_type 102 209 0 2568 10 0 33 chr1 92977139 92977439 -189216225 + AluYa5 SINE Alu 1 290 -21 415 208 17 17 chr1 92977932 92978052 -189215612 - Charlie5 DNA MER1_type -27 2585 2466 45 96 0 0 chr1 92978052 92978188 -189215476 + AT_rich Low_complexity Low_complexity 1 136 0 2182 219 47 31 chr1 92978196 92978729 -189214935 + MLT1F LTR MaLR 1 505 0 348 255 10 10 chr1 92978732 92978830 -189214834 + MLT1F-int LTR MaLR 5 102 -1269 751 281 58 4 chr1 92978890 92979164 -189214500 + MLT1F-int LTR MaLR 309 597 -774 2182 119 3 0 chr1 92979363 92979665 -189213999 - AluSp SINE Alu -10 303 1 423 356 11 11 chr1 92979705 92979893 -189213771 + MLT1F-int LTR MaLR 696 883 -488 500 270 20 125 chr1 92980082 92980434 -189213230 + MLT1F-int LTR MaLR 1023 1337 -34 1710 245 119 16 chr1 92980471 92980977 -189212687 + MLT1F1 LTR MaLR 10 567 0 604 204 45 22 chr1 92980977 92981130 -189212534 - MER33 DNA MER1_type -281 43 1 428 324 109 52 chr1 92981150 92981499 -189212165 + L2 LINE L2 2904 3272 0 202 310 0 0 chr1 92981500 92981558 -189212106 + L3 LINE CR1 1460 1517 -60 1638 181 6 19 chr1 92983427 92983742 -189209922 - AluJb SINE Alu -1 311 1 208 135 0 0 chr1 92983802 92983839 -189209825 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 931 183 31 13 chr1 92983839 92984068 -189209596 + L1MA7 LINE L1 6056 6288 -3 561 290 31 65 chr1 92984912 92985205 -189208459 - L2 LINE L2 -6 3307 3025 1295 261 65 36 chr1 92985206 92985655 -189208009 - MLT1C LTR MaLR 0 467 6 532 302 99 5 chr1 92985660 92986003 -189207661 - L2 LINE L2 -285 3028 1883 227 303 79 26 chr1 92986217 92986293 -189207371 + L2 LINE L2 3193 3272 0 275 330 10 25 chr1 92987601 92987801 -189205863 + MLT2E LTR ERVL 411 607 -21 213 121 0 0 chr1 92987801 92987834 -189205830 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 191 349 0 0 chr1 92988473 92988556 -189205108 - L3 LINE CR1 -919 658 576 1712 116 16 8 chr1 92989131 92989382 -189204282 + AluSq SINE Alu 32 284 -29 261 0 0 0 chr1 92989382 92989411 -189204253 + (CA)n Simple_repeat Simple_repeat 2 30 0 1176 252 40 26 chr1 92989411 92989831 -189203833 + HAL1 LINE L1 1886 2311 -196 290 246 45 36 chr1 92989855 92989965 -189203699 + HAL1 LINE L1 2397 2507 0 21 0 0 0 chr1 92990040 92990061 -189203603 + AT_rich Low_complexity Low_complexity 1 21 0 222 237 53 142 chr1 92991170 92991339 -189202325 - L2 LINE L2 -7 3306 3153 800 336 107 49 chr1 92991550 92992214 -189201450 - L2 LINE L2 -429 2885 2130 1690 187 0 0 chr1 92992214 92992492 -189201172 + AluJo SINE Alu 19 296 -16 800 336 107 49 chr1 92992492 92992943 -189200721 - L2 LINE L2 -1184 2130 1706 376 188 14 0 chr1 92992943 92993081 -189200583 + (TA)n Simple_repeat Simple_repeat 2 141 0 22 35 0 0 chr1 92993370 92993399 -189200265 + AT_rich Low_complexity Low_complexity 1 29 0 1498 250 25 83 chr1 92993471 92993603 -189200061 + MLT2B1 LTR ERVL 1 139 -381 1804 168 24 42 chr1 92993603 92993984 -189199680 - THE1C LTR MaLR 0 375 2 1498 250 25 83 chr1 92993984 92994357 -189199307 + MLT2B1 LTR ERVL 139 532 12 630 11 35 0 chr1 92994357 92994444 -189199220 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 192 40 0 0 chr1 92994450 92994475 -189199189 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 1498 250 25 83 chr1 92994475 92994513 -189199151 + MLT2B1 LTR ERVL 481 520 0 230 359 130 0 chr1 92994576 92994707 -189198957 - L2 LINE L2 -195 3077 2930 442 73 176 0 chr1 92994991 92995059 -189198605 - MADE1 DNA Mariner 0 80 1 * 1278 206 41 66 chr1 92995059 92995422 -189198242 - MLT1B LTR MaLR -32 358 5 2738 267 83 38 chr1 92995431 92996205 -189197459 - MLT1B-int LTR MaLR -6 1365 531 362 21 0 21 chr1 92996205 92996253 -189197411 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 2738 267 83 38 chr1 92996253 92996519 -189197145 - MLT1B-int LTR MaLR -840 531 278 490 138 11 11 chr1 92996510 92996597 -189197067 - MLT1B-int LTR MaLR -1283 88 2 * 11849 176 29 9 chr1 92996600 92998732 -189194932 + ERVL LTR ERVL 3592 5764 0 835 184 29 6 chr1 92998732 92998794 -189194870 + Ricksha DNA DNA 351 416 -1630 855 199 143 42 chr1 92998827 92999043 -189194621 + MLT2B1 LTR ERVL 283 520 0 539 133 12 0 chr1 93000159 93000242 -189193422 - MLT1A2 LTR MaLR -290 84 1 25 0 0 0 chr1 93000760 93000785 -189192879 + AT_rich Low_complexity Low_complexity 1 25 0 397 314 77 0 chr1 93002183 93002339 -189191325 - MIR SINE MIR -94 168 1 1077 216 176 13 chr1 93002747 93003140 -189190524 - Charlie1b DNA MER1_type -1 522 66 247 346 59 26 chr1 93003505 93003658 -189190006 - MIR SINE MIR -58 204 47 251 205 154 0 chr1 93003693 93003771 -189189893 + LTR37B LTR ERV1 3 92 -376 299 274 59 0 chr1 93003869 93003971 -189189693 + LTR37A LTR ERV1 111 218 -208 377 225 12 0 chr1 93004034 93004114 -189189550 + MER58 DNA MER1_type 134 2419 -1 1523 108 0 0 chr1 93004437 93004632 -189189032 + AluSx SINE Alu 1 195 -117 2011 191 31 8 chr1 93005885 93006272 -189187392 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr1 93006630 93006659 -189187005 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr1 93007536 93007564 -189186100 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1854 165 52 0 chr1 93007879 93008207 -189185457 + MER7A DNA MER2_type 4 346 0 182 219 98 130 chr1 93008808 93008931 -189184733 - L3 LINE CR1 -869 708 590 282 340 19 10 chr1 93009454 93009557 -189184107 + MIR SINE MIR 20 123 -139 713 200 0 0 chr1 93009606 93009726 -189183938 + AluJb SINE Alu 1 120 -192 715 292 15 0 chr1 93010239 93010434 -189183230 - MIR SINE MIR -1 261 64 371 274 30 7 chr1 93010705 93010840 -189182824 - L1ME4a LINE L1 -3 6118 5981 470 176 0 8 chr1 93011024 93011149 -189182515 + (TA)n Simple_repeat Simple_repeat 2 125 0 25 0 0 0 chr1 93011600 93011625 -189182039 + AT_rich Low_complexity Low_complexity 1 25 0 303 346 0 19 chr1 93011695 93011854 -189181810 - L1ME4a LINE L1 -418 5703 5548 256 337 11 11 chr1 93012642 93012734 -189180930 - MIR SINE MIR -149 113 22 1852 223 3 0 chr1 93012859 93013223 -189180441 - MLT1A1 LTR MaLR 0 365 1 827 274 69 0 chr1 93013283 93013528 -189180136 + MIR SINE MIR 1 262 0 545 284 28 70 chr1 93014915 93015228 -189178436 - L2 LINE L2 -250 3063 2767 1186 222 58 32 chr1 93015290 93015527 -189178137 - L1MC3 LINE L1 0 7785 7535 4276 186 33 22 chr1 93015527 93016373 -189177291 - MER21B LTR ERV1 -4 859 5 1186 222 58 32 chr1 93016373 93016482 -189177182 - L1MC3 LINE L1 -250 7535 7430 * 1317 202 103 63 chr1 93016468 93016687 -189176977 - L1MC3 LINE L1 -672 7113 6904 243 0 0 0 chr1 93016687 93016714 -189176950 + (TG)n Simple_repeat Simple_repeat 2 28 0 1317 202 103 63 chr1 93016714 93016940 -189176724 - L1MC3 LINE L1 -881 6904 6650 365 254 184 0 chr1 93016954 93017068 -189176596 - L2 LINE L2 -602 2712 2578 21 36 0 0 chr1 93017960 93017988 -189175676 + AT_rich Low_complexity Low_complexity 1 28 0 212 348 44 61 chr1 93018447 93018630 -189175034 - MIR SINE MIR -55 207 29 260 209 64 81 chr1 93018677 93018786 -189174878 + MIR SINE MIR 94 196 -63 1553 207 28 23 chr1 93019212 93019564 -189174100 - MLT1A1 LTR MaLR 0 365 12 21 0 0 0 chr1 93020315 93020336 -189173328 + AT_rich Low_complexity Low_complexity 1 21 0 282 247 0 54 chr1 93020856 93020949 -189172715 - MIR SINE MIR -38 224 137 463 341 87 31 chr1 93021432 93021719 -189171945 - L2 LINE L2 0 3313 3011 385 309 62 28 chr1 93021792 93021970 -189171694 - MIR3 SINE MIR -2 206 23 274 222 28 0 chr1 93024699 93024771 -189168893 - MIR SINE MIR -45 217 144 292 306 97 14 chr1 93024847 93024991 -189168673 - MIR SINE MIR -105 157 2 551 216 115 11 chr1 93025062 93025241 -189168423 + MLT2E LTR ERVL 1 193 -435 464 286 80 49 chr1 93025246 93025470 -189168194 - L2 LINE L2 -396 2918 2688 680 287 120 38 chr1 93025470 93025630 -189168034 - L2 LINE L2 -1019 2295 2150 1751 190 3 3 chr1 93025630 93025925 -189167739 - AluJb SINE Alu -17 295 1 680 287 120 38 chr1 93025925 93026105 -189167559 - L2 LINE L2 -1164 2150 1927 231 95 0 0 chr1 93026657 93026699 -189166965 + LTR66 LTR ERVL 398 439 -171 229 75 50 0 chr1 93026701 93026741 -189166923 - L1MC4 LINE L1 -1339 6703 6662 24 0 0 0 chr1 93026789 93026813 -189166851 + AT_rich Low_complexity Low_complexity 1 24 0 1259 269 96 10 chr1 93027237 93027624 -189166040 + LTR16A LTR ERVL 16 435 -15 532 269 118 47 chr1 93027707 93027919 -189165745 + MIR SINE MIR 35 261 -1 332 329 125 20 chr1 93027957 93028109 -189165555 - MIR3 SINE MIR -31 177 10 1563 88 0 10 chr1 93028313 93028518 -189165146 + AluSg/x SINE Alu 101 303 -7 1468 154 0 5 chr1 93031708 93031929 -189161735 + AluJb SINE Alu 3 222 -90 216 97 0 0 chr1 93034817 93034848 -189158816 + (CA)n Simple_repeat Simple_repeat 2 32 0 729 261 126 52 chr1 93034962 93035445 -189158219 - LTR33A LTR ERVL -4 519 1 196 278 0 19 chr1 93035461 93035515 -189158149 + MIR SINE MIR 199 251 -11 242 182 15 15 chr1 93037387 93037396 -189156268 + (TA)n Simple_repeat Simple_repeat 2 10 -57 1932 89 0 0 chr1 93037396 93037632 -189156032 + AluSx SINE Alu 1 236 -76 242 182 15 15 chr1 93037632 93037688 -189155976 + (TA)n Simple_repeat Simple_repeat 9 67 0 236 186 10 29 chr1 93037775 93037877 -189155787 + (TA)n Simple_repeat Simple_repeat 2 101 0 190 273 0 0 chr1 93038829 93038884 -189154780 + L2 LINE L2 2043 2097 -1217 235 340 196 10 chr1 93038925 93039134 -189154530 + L2 LINE L2 3016 3263 -50 2050 134 127 21 chr1 93039682 93040069 -189153595 - MSTA LTR MaLR 0 428 1 9018 147 21 35 chr1 93040069 93041670 -189151994 - MSTA-int LTR MaLR 0 1580 3 1798 164 114 45 chr1 93041673 93041899 -189151765 - MSTA LTR MaLR -1 427 218 2852 3 0 3 chr1 93041899 93042211 -189151453 - AluYa5 SINE Alu 0 311 1 1798 164 114 45 chr1 93042211 93042380 -189151284 - MSTA LTR MaLR -210 218 5 203 125 25 0 chr1 93043757 93043797 -189149867 + (TG)n Simple_repeat Simple_repeat 1 41 0 368 238 56 56 chr1 93044847 93044973 -189148691 - MIR SINE MIR -65 197 72 546 300 80 31 chr1 93044974 93045390 -189148274 - LTR33 LTR ERVL -2 519 57 396 242 159 0 chr1 93045912 93046044 -189147620 + MER103 DNA DNA 2 154 -12 213 327 40 20 chr1 93046840 93046941 -189146723 + MIR SINE MIR 17 119 -89 206 345 0 36 chr1 93047467 93047551 -189146113 + MER5A DNA MER1_type 37 117 -72 186 143 0 0 chr1 93047551 93047586 -189146078 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 238 314 61 4 chr1 93047837 93047956 -189145708 - MIR SINE MIR -61 147 21 1130 299 224 18 chr1 93049144 93049873 -189143791 + L3 LINE CR1 383 1261 -316 418 312 63 53 chr1 93050398 93050699 -189142965 + L1 LINE L1 4749 5052 -1094 186 143 0 0 chr1 93050795 93050830 -189142834 + (GAA)n Simple_repeat Simple_repeat 2 36 0 588 300 59 83 chr1 93050890 93051263 -189142401 + L2 LINE L2 2373 2736 -578 427 299 39 29 chr1 93051252 93051459 -189142205 - L2 LINE L2 -2 3311 3103 * 207 328 54 86 chr1 93051480 93051666 -189141998 + MER91A DNA MER1_type 5 184 -12 2257 90 7 0 chr1 93051674 93051975 -189141689 - AluY SINE Alu -8 303 1 650 291 52 9 chr1 93051980 93052193 -189141471 - L2 LINE L2 -604 2710 2489 601 323 114 34 chr1 93052256 93052696 -189140968 + L2 LINE L2 2828 3302 -11 307 281 55 82 chr1 93054137 93054283 -189139381 + L2 LINE L2 3127 3268 -4 32 43 0 0 chr1 93054293 93054339 -189139325 + AT_rich Low_complexity Low_complexity 1 46 0 1777 171 0 25 chr1 93054502 93054818 -189138846 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr1 93055646 93055669 -189137995 + AT_rich Low_complexity Low_complexity 1 23 0 217 399 24 24 chr1 93056555 93056768 -189136896 - L2 LINE L2 -905 2409 2197 196 348 76 34 chr1 93058033 93058151 -189135513 + L2 LINE L2 3187 3309 -4 310 228 0 0 chr1 93059675 93059754 -189133910 + L1MB1 LINE L1 6078 6156 -12 253 222 88 27 chr1 93059790 93059926 -189133738 + L1MA10 LINE L1 6014 6332 -1 252 318 246 0 chr1 93060633 93060759 -189132905 - L2 LINE L2 -3 3269 3113 446 190 91 8 chr1 93060855 93060976 -189132688 + MER53 DNA DNA 1 131 -58 342 204 0 0 chr1 93060988 93061076 -189132588 + (TA)n Simple_repeat Simple_repeat 2 89 0 303 364 24 38 chr1 93061130 93061339 -189132325 - L2 LINE L2 -213 3059 2854 554 296 76 48 chr1 93062610 93062804 -189130860 - L2 LINE L2 -6 3307 3101 1002 204 132 36 chr1 93062804 93063137 -189130527 + MLT1A1 LTR MaLR 1 365 0 554 296 76 48 chr1 93063137 93063233 -189130431 - L2 LINE L2 -212 3101 3009 2094 134 7 3 chr1 93063316 93063621 -189130043 + AluSx SINE Alu 1 306 -6 1136 315 0 18 chr1 93063747 93064090 -189129574 - LTR16A LTR ERVL 0 450 114 526 298 13 13 chr1 93064792 93064943 -189128721 + MER5A DNA MER1_type 2 152 -37 23 33 0 0 chr1 93068955 93068985 -189124679 + AT_rich Low_complexity Low_complexity 1 30 0 225 65 0 0 chr1 93069100 93069131 -189124533 + (TG)n Simple_repeat Simple_repeat 2 32 0 713 119 9 0 chr1 93069214 93069323 -189124341 - AluJb SINE Alu -190 122 13 22 0 0 0 chr1 93069505 93069527 -189124137 + AT_rich Low_complexity Low_complexity 1 22 0 2204 104 0 7 chr1 93070432 93070739 -189122925 + AluSc SINE Alu 1 305 -4 4998 221 13 8 chr1 93070967 93072169 -189121495 - L1 LINE L1 -2652 3494 2287 1794 94 45 4 chr1 93072163 93072358 -189121306 + L1PB1 LINE L1 5586 5796 -355 * 342 62 0 46 chr1 93072358 93072423 -189121241 + (TA)n Simple_repeat Simple_repeat 2 63 0 1794 94 45 4 chr1 93072423 93072493 -189121171 + L1PB1 LINE L1 5796 5862 -289 286 159 0 0 chr1 93072492 93072536 -189121128 - L1P5 LINE L1 -287 5864 5821 * 1211 117 0 0 chr1 93072534 93072713 -189120951 - L1PB1 LINE L1 -71 6080 5902 470 79 0 8 chr1 93072710 93072833 -189120831 + L1PB1 LINE L1 5871 6143 -8 * 25 0 0 0 chr1 93073014 93073039 -189120625 + AT_rich Low_complexity Low_complexity 1 25 0 23183 170 22 14 chr1 93073393 93078575 -189115089 - L1PA11 LINE L1 0 7612 1578 189 74 0 0 chr1 93078575 93078602 -189115062 + (TTG)n Simple_repeat Simple_repeat 1 27 0 23183 170 22 14 chr1 93078602 93078967 -189114697 - L1PA11 LINE L1 -6034 1578 1217 357 223 151 22 chr1 93078986 93079125 -189114539 + MIR SINE MIR 5 161 -101 1414 176 8 0 chr1 93079126 93079365 -189114299 + MER7A DNA MER2_type 2 240 -106 580 241 63 45 chr1 93079402 93079760 -189113904 - MER61D LTR ERV1 -10 750 196 * 712 234 53 12 chr1 93079736 93079907 -189113757 - LTR28 LTR ERV1 -842 178 1 585 226 0 0 chr1 93079907 93080013 -189113651 + MER7A DNA MER2_type 229 334 -3 245 275 0 44 chr1 93080029 93080120 -189113544 + MIR SINE MIR 176 262 0 28 61 0 0 chr1 93080720 93080769 -189112895 + AT_rich Low_complexity Low_complexity 1 49 0 352 274 16 102 chr1 93081565 93081751 -189111913 - MIR SINE MIR -71 191 22 182 404 66 0 chr1 93081832 93081968 -189111696 - L2 LINE L2 -238 3034 2890 511 264 104 43 chr1 93082408 93082639 -189111025 - MIR SINE MIR -1 261 17 208 49 73 0 chr1 93082984 93083025 -189110639 + A-rich Low_complexity Low_complexity 2 45 0 182 281 47 16 chr1 93083450 93083514 -189110150 + MIR SINE MIR 170 235 -27 14578 199 34 32 chr1 93085006 93089999 -189103665 + L1MA7 LINE L1 1209 6290 -237 895 185 0 0 chr1 93090003 93090149 -189103515 - AluSg/x SINE Alu -20 290 145 720 203 28 6 chr1 93090149 93090331 -189103333 + L1MA7 LINE L1 6342 6527 0 585 295 205 18 chr1 93090500 93090836 -189102828 + LTR33 LTR ERVL 1 399 -122 1610 266 53 2 chr1 93090912 93091307 -189102357 - MER70B LTR ERVL -152 426 12 2839 6 0 0 chr1 93091654 93091966 -189101698 - AluYb8 SINE Alu -6 312 1 24 0 0 0 chr1 93093053 93093077 -189100587 + AT_rich Low_complexity Low_complexity 1 24 0 577 316 11 6 chr1 93093668 93093842 -189099822 - MIR SINE MIR -59 203 29 276 306 81 31 chr1 93094237 93094397 -189099267 - L2 LINE L2 -213 3059 2892 577 334 94 4 chr1 93094480 93094796 -189098868 - HERV16 LTR ERVL -2095 2901 2657 1656 183 20 0 chr1 93094796 93095102 -189098562 + AluSx SINE Alu 1 312 0 664 137 24 0 chr1 93095117 93095241 -189098423 + GA-rich Low_complexity Low_complexity 2 128 0 1400 139 9 0 chr1 93095369 93095584 -189098080 + AluSg/x SINE Alu 86 302 -10 2135 318 59 23 chr1 93095723 93097144 -189096520 - HERV16 LTR ERVL -2488 2508 902 2263 98 0 3 chr1 93097144 93097449 -189096215 - AluSx SINE Alu -8 304 1 2135 318 59 23 chr1 93097449 93097988 -189095676 - HERV16 LTR ERVL -4094 902 384 23 0 0 0 chr1 93098133 93098156 -189095508 + AT_rich Low_complexity Low_complexity 1 23 0 1746 78 19 12 chr1 93098528 93098784 -189094880 - L1PA13 LINE L1 -6 6157 5900 241 413 35 31 chr1 93098828 93099085 -189094579 - L2 LINE L2 -2009 1305 1048 189 295 51 0 chr1 93099247 93099325 -189094339 - L2 LINE L2 -2502 812 731 959 320 90 6 chr1 93099352 93099818 -189093846 + L2 LINE L2 1932 2436 -878 440 258 8 8 chr1 93099888 93100008 -189093656 + MLT1H LTR MaLR 35 154 -395 246 233 68 126 chr1 93100193 93100296 -189093368 + MLT1H LTR MaLR 453 549 0 472 294 190 11 chr1 93101004 93101188 -189092476 + MIR SINE MIR 46 262 0 529 246 35 14 chr1 93101202 93101344 -189092320 + MLT1J1 LTR MaLR 1 145 -301 6744 135 43 24 chr1 93101504 93101564 -189092100 + Tigger1 DNA MER2_type 1 58 -2360 2192 123 3 0 chr1 93101564 93101872 -189091792 - AluSx SINE Alu -3 309 1 6744 135 43 24 chr1 93101872 93102983 -189090681 + Tigger1 DNA MER2_type 58 1194 -1224 377 269 112 59 chr1 93103389 93103694 -189089970 + L1ME LINE L1 5503 5823 -298 320 274 68 43 chr1 93103710 93103827 -189089837 + L2 LINE L2 3193 3312 -1 34 24 0 0 chr1 93104078 93104119 -189089545 + AT_rich Low_complexity Low_complexity 1 41 0 620 310 53 22 chr1 93104193 93104419 -189089245 - MIR SINE MIR 0 262 30 463 43 143 0 chr1 93104458 93104528 -189089136 + MADE1 DNA Mariner 1 80 0 341 310 55 114 chr1 93105017 93105378 -189088286 + L2 LINE L2 2933 3272 0 228 35 0 0 chr1 93105512 93105541 -189088123 + (CA)n Simple_repeat Simple_repeat 2 30 0 336 271 93 9 chr1 93105572 93105679 -189087985 - MIR SINE MIR -116 146 31 42 57 0 0 chr1 93108591 93108661 -189085003 + AT_rich Low_complexity Low_complexity 1 70 0 272 381 36 14 chr1 93108862 93109001 -189084663 + MIR3 SINE MIR 66 207 -1 2260 70 0 3 chr1 93113554 93113868 -189079796 + AluY SINE Alu 1 313 0 2265 296 116 10 chr1 93114182 93115108 -189078556 + L2 LINE L2 1634 2657 -657 438 262 67 76 chr1 93115111 93115321 -189078343 - LTR16C LTR ERVL 0 491 284 773 238 43 0 chr1 93115438 93115602 -189078062 - MER45A DNA AcHobo 0 178 8 351 331 59 20 chr1 93115718 93115972 -189077692 - L1ME LINE L1 -449 5672 5409 1325 188 45 27 chr1 93116028 93116363 -189077301 + L1ME1 LINE L1 4643 4983 -1163 207 0 0 0 chr1 93116573 93116596 -189077068 + (CA)n Simple_repeat Simple_repeat 1 23 0 2322 117 5 11 chr1 93116599 93116966 -189076698 + L1PA14 LINE L1 5796 6160 -1 1954 235 60 44 chr1 93116968 93117880 -189075784 + L1ME1 LINE L1 4987 5912 -254 936 204 0 0 chr1 93118118 93118280 -189075384 - AluJo/FRAM SINE Alu -11 301 140 344 360 54 40 chr1 93118706 93118928 -189074736 - MIR SINE MIR -6 256 32 355 309 0 32 chr1 93119107 93119233 -189074431 - MIR SINE MIR -80 182 61 12856 24 5 2 chr1 93119697 93121663 -189072001 + L1PA4 LINE L1 3862 5832 -323 3557 194 42 6 chr1 93121804 93122511 -189071153 - MER44D DNA MER2_type 0 605 1 2332 83 3 0 chr1 93122838 93123138 -189070526 + AluSp SINE Alu 1 301 -12 22 35 0 0 chr1 93124514 93124543 -189069121 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 93124684 93124734 -189068930 + AT_rich Low_complexity Low_complexity 1 50 0 302 351 45 0 chr1 93125746 93125857 -189067807 + MIR SINE MIR 31 146 -116 464 268 63 66 chr1 93126121 93126501 -189067163 + L1MCa LINE L1 1026 1404 -5022 323 253 114 0 chr1 93126671 93126808 -189066856 + L1MDb LINE L1 1167 1356 -5114 36 0 0 0 chr1 93126817 93126853 -189066811 + AT_rich Low_complexity Low_complexity 1 36 0 340 318 15 30 chr1 93126865 93127066 -189066598 + L1MDb LINE L1 1806 2003 -4584 370 274 57 32 chr1 93127405 93127562 -189066102 + MLT1H1 LTR MaLR 353 513 -42 580 275 63 34 chr1 93127592 93127974 -189065690 + L1MDb LINE L1 2147 2539 -4048 391 285 120 22 chr1 93127983 93128482 -189065182 + L1MDb LINE L1 3199 3746 -2660 273 57 0 0 chr1 93129122 93129157 -189064507 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 30 45 0 0 chr1 93129346 93129390 -189064274 + AT_rich Low_complexity Low_complexity 1 44 0 2614 41 29 12 chr1 93130055 93130395 -189063269 + L1PA4 LINE L1 5807 6152 -3 26 30 0 0 chr1 93130395 93130428 -189063236 + AT_rich Low_complexity Low_complexity 1 33 0 2300 231 41 36 chr1 93130618 93131150 -189062514 - MLT1F LTR MaLR -7 535 1 617 290 77 14 chr1 93132347 93132554 -189061110 - MIR SINE MIR -25 237 18 2536 52 0 3 chr1 93133525 93133830 -189059834 - AluY SINE Alu -7 304 1 1396 229 164 34 chr1 93135410 93135887 -189057777 + MLT1F LTR MaLR 2 540 -2 315 261 78 59 chr1 93136099 93136252 -189057412 - MIR SINE MIR -59 203 48 1538 214 3 7 chr1 93136281 93136584 -189057080 - AluJo SINE Alu -10 302 1 207 0 0 0 chr1 93136690 93136713 -189056951 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2112 125 6 0 chr1 93136944 93137255 -189056409 - AluSq SINE Alu 0 313 1 270 95 0 0 chr1 93137832 93137874 -189055790 + (CA)n Simple_repeat Simple_repeat 2 43 0 612 276 103 0 chr1 93139466 93139651 -189054013 - MIR SINE MIR -11 251 48 214 261 0 72 chr1 93140875 93140944 -189052720 - L2 LINE L2 -43 3229 3166 21 36 0 0 chr1 93141074 93141102 -189052562 + AT_rich Low_complexity Low_complexity 1 28 0 368 97 16 0 chr1 93143801 93143863 -189049801 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 7913 153 31 40 chr1 93143967 93145432 -189048232 + Ricksha DNA DNA 1788 3238 -8 1023 290 133 26 chr1 93146013 93146506 -189047158 + L2 LINE L2 2251 2857 -457 260 380 42 21 chr1 93146551 93146743 -189046921 - L2 LINE L2 -2560 754 559 853 308 93 33 chr1 93146768 93147187 -189046477 - LTR16A LTR ERVL -6 444 1 700 144 0 68 chr1 93147208 93147340 -189046324 - AluJo SINE Alu -9 303 181 22 0 0 0 chr1 93147340 93147362 -189046302 + AT_rich Low_complexity Low_complexity 1 22 0 464 243 10 0 chr1 93147362 93147465 -189046199 - AluJo SINE Alu -202 110 7 193 375 42 50 chr1 93147481 93147740 -189045924 - L2 LINE L2 -2804 510 254 265 247 39 0 chr1 93147795 93147872 -189045792 + MIR SINE MIR 70 149 -113 189 147 0 0 chr1 93147926 93147960 -189045704 + (T)n Simple_repeat Simple_repeat 1 34 0 248 224 0 0 chr1 93149932 93149981 -189043683 + L2 LINE L2 3263 3311 -2 396 257 168 0 chr1 93152246 93152359 -189041305 - L2 LINE L2 0 3272 3141 2866 113 9 0 chr1 93152401 93152836 -189040828 + L1PB1 LINE L1 5710 6148 -3 558 244 16 119 chr1 93153386 93153689 -189039975 - LTR41 LTR ERVL -10 763 492 324 246 36 43 chr1 93153870 93154008 -189039656 - LTR41 LTR ERVL -636 137 1 2745 84 0 0 chr1 93154431 93154786 -189038878 + THE1A LTR MaLR 1 355 0 904 147 28 0 chr1 93155093 93155236 -189038428 - FAM SINE Alu -38 147 1 24 32 0 0 chr1 93156650 93156681 -189036983 + AT_rich Low_complexity Low_complexity 1 31 0 208 175 25 0 chr1 93156712 93156752 -189036912 + CT-rich Low_complexity Low_complexity 3 43 0 303 367 68 14 chr1 93158567 93158714 -189034950 + L2 LINE L2 3118 3272 0 359 327 120 34 chr1 93159082 93159290 -189034374 + MIR SINE MIR 30 255 -7 1684 306 196 49 chr1 93159363 93161826 -189031838 + L2 LINE L2 259 3083 -230 203 256 0 0 chr1 93161835 93161878 -189031786 + L2 LINE L2 3228 3270 -43 305 333 32 32 chr1 93162295 93162421 -189031243 - L2 LINE L2 -8 3305 3180 24 0 0 0 chr1 93162791 93162815 -189030849 + AT_rich Low_complexity Low_complexity 1 24 0 1611 152 0 19 chr1 93164235 93164465 -189029199 - L1MA4 LINE L1 -6 6294 6070 2325 94 3 0 chr1 93164465 93164763 -189028901 - AluSx SINE Alu -2 310 12 1611 152 0 19 chr1 93164763 93164841 -189028823 - L1MA4 LINE L1 -230 6070 5992 2571 184 125 18 chr1 93165427 93166084 -189027580 - LTR8A LTR ERV1 0 727 1 656 173 0 0 chr1 93166097 93166207 -189027457 - AluSg/x SINE Alu -9 300 191 3952 90 15 0 chr1 93166609 93167155 -189026509 + MER41A LTR ERV1 1 554 0 2384 179 58 43 chr1 93167155 93167924 -189025740 + MER41A-int LTR ERV1 1 1472 -5570 * 9049 122 41 28 chr1 93167900 93168068 -189025596 + MER41A-int LTR ERV1 909 1073 -4873 222 37 0 0 chr1 93168068 93168095 -189025569 + (TC)n Simple_repeat Simple_repeat 2 28 0 9049 122 41 28 chr1 93168095 93171174 -189022490 + MER41A-int LTR ERV1 1073 5944 -2 3193 115 78 2 chr1 93171174 93171689 -189021975 + MER41A LTR ERV1 1 554 0 4328 135 36 7 chr1 93172115 93172747 -189020917 - MER50 LTR ERV1 -25 709 54 378 0 0 0 chr1 93172747 93172789 -189020875 + (TG)n Simple_repeat Simple_repeat 2 43 0 4328 135 36 7 chr1 93172789 93172845 -189020819 - MER50 LTR ERV1 -680 54 1 314 363 14 27 chr1 93173446 93173592 -189020072 - MER5B DNA MER1_type -32 146 3 1943 258 86 11 chr1 93174291 93174858 -189018806 - MLT1E2 LTR MaLR -14 612 3 2317 208 54 15 chr1 93174972 93174994 -189018670 - MLT2B3 LTR ERVL 0 554 534 591 85 0 0 chr1 93174994 93175076 -189018588 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 2317 208 54 15 chr1 93175076 93175586 -189018078 - MLT2B3 LTR ERVL -20 534 1 941 137 0 0 chr1 93177020 93177159 -189016505 + FRAM SINE Alu 28 166 -10 218 250 203 0 chr1 93177192 93177256 -189016408 + L2 LINE L2 3234 3310 -3 319 239 0 15 chr1 93178342 93178409 -189015255 - L2 LINE L2 0 3272 3207 2103 127 3 22 chr1 93179175 93179490 -189014174 + AluSx SINE Alu 1 309 -3 246 122 0 0 chr1 93179934 93179975 -189013689 + MER52A LTR ERV1 1715 1755 0 298 330 47 39 chr1 93180009 93180242 -189013422 - MIR SINE MIR 0 262 28 579 269 51 0 chr1 93180546 93180702 -189012962 + MIR SINE MIR 94 257 -5 241 261 9 9 chr1 93181372 93181483 -189012181 + GA-rich Low_complexity Low_complexity 3 113 0 374 196 157 20 chr1 93182050 93182152 -189011512 - L2 LINE L2 -3 3310 3195 188 0 74 0 chr1 93182427 93182454 -189011210 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2240 107 0 0 chr1 93182673 93182972 -189010692 + AluSx SINE Alu 1 299 -13 5743 90 12 18 chr1 93183331 93184166 -189009498 + L1PA10 LINE L1 5334 6163 -5 201 94 0 0 chr1 93185347 93185379 -189008285 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 223 318 91 30 chr1 93186581 93186713 -189006951 + MIR SINE MIR 31 170 -92 327 273 18 64 chr1 93187596 93187706 -189005958 + L2 LINE L2 3168 3272 0 688 286 76 22 chr1 93188113 93188337 -189005327 - MIR SINE MIR -24 238 3 23 0 0 0 chr1 93188833 93188856 -189004808 + AT_rich Low_complexity Low_complexity 1 23 0 2796 230 86 22 chr1 93189207 93190266 -189003398 - L1ME2 LINE L1 -19 6145 5016 319 276 24 39 chr1 93190467 93190594 -189003070 - LTR33A LTR ERVL 0 523 399 290 326 109 0 chr1 93190766 93190913 -189002751 - LTR33A LTR ERVL -308 215 53 746 242 161 8 chr1 93191482 93191557 -189002107 + L1MB7 LINE L1 10 72 -6787 291 28 0 0 chr1 93191557 93191593 -189002071 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 746 242 161 8 chr1 93191593 93191765 -189001899 + L1MB7 LINE L1 72 295 -6564 1198 207 16 106 chr1 93191777 93192224 -189001440 + L1MB7 LINE L1 745 1253 -5606 7154 222 53 60 chr1 93192228 93192733 -189000931 + L1MB7 LINE L1 3276 3783 -3212 310 135 46 23 chr1 93192733 93192809 -189000855 - FRAM/FAM SINE Alu -93 82 25 7154 222 53 60 chr1 93192809 93192822 -189000842 + L1MB7 LINE L1 3783 3795 -3200 295 149 0 0 chr1 93192822 93192876 -189000788 + FLAM SINE Alu 71 115 -18 7154 222 53 60 chr1 93192876 93194216 -188999448 + L1MB7 LINE L1 3795 5143 -1852 2162 114 0 3 chr1 93194216 93194540 -188999124 + L1PB1 LINE L1 5828 6150 -1 7154 222 53 60 chr1 93194540 93196234 -188997430 + L1MB7 LINE L1 5143 6982 -13 330 288 31 86 chr1 93196355 93196518 -188997146 - MIR SINE MIR -49 213 60 297 395 40 7 chr1 93197123 93197275 -188996389 - MIR3 SINE MIR -21 187 31 195 42 0 0 chr1 93198334 93198358 -188995306 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 21 100 0 0 chr1 93198577 93198647 -188995017 + AT_rich Low_complexity Low_complexity 1 70 0 407 309 179 29 chr1 93200830 93201037 -188992627 + MIR SINE MIR 15 252 -10 23 0 0 0 chr1 93202074 93202097 -188991567 + AT_rich Low_complexity Low_complexity 1 23 0 32 57 0 0 chr1 93203031 93203084 -188990580 + AT_rich Low_complexity Low_complexity 1 53 0 2198 114 0 0 chr1 93203084 93203392 -188990272 + AluSg SINE Alu 1 308 -2 316 348 97 0 chr1 93203470 93203625 -188990039 + MIR SINE MIR 49 218 -44 1971 140 0 3 chr1 93203694 93204020 -188989644 - AluSx SINE Alu 0 325 1 287 55 455 0 chr1 93204220 93204275 -188989389 - MADE1 DNA Mariner 0 80 1 406 233 48 96 chr1 93204541 93204687 -188988977 + MIR SINE MIR 53 191 -71 555 299 24 18 chr1 93205935 93206102 -188987562 + MIR SINE MIR 25 192 -70 22 0 0 0 chr1 93206157 93206179 -188987485 + AT_rich Low_complexity Low_complexity 1 22 0 879 296 37 39 chr1 93207485 93207973 -188985691 - L2 LINE L2 -62 3251 2763 1262 93 0 0 chr1 93208099 93208261 -188985403 + AluY SINE Alu 132 293 -18 260 401 44 72 chr1 93208442 93208761 -188984903 + L2 LINE L2 2963 3272 0 1931 179 0 0 chr1 93208798 93209106 -188984558 - AluJb SINE Alu 0 312 5 507 348 85 43 chr1 93209761 93210534 -188983130 + L3 LINE CR1 675 1576 -1 186 257 203 0 chr1 93210641 93210715 -188982949 - MIR SINE MIR -16 246 158 182 294 0 20 chr1 93210854 93210905 -188982759 - MIR SINE MIR 0 262 213 6147 31 0 0 chr1 93210917 93211648 -188982016 - L1PA4 LINE L1 -3 6152 5422 460 271 60 23 chr1 93211668 93211801 -188981863 - MIR SINE MIR -120 142 5 270 0 0 0 chr1 93213923 93213953 -188979711 + (CA)n Simple_repeat Simple_repeat 1 30 0 320 346 101 56 chr1 93214009 93214405 -188979259 + L2 LINE L2 2207 2620 -694 229 132 0 0 chr1 93214687 93214725 -188978939 + Alu SINE Alu 256 293 -9 964 239 19 61 chr1 93216363 93216627 -188977037 - MIR SINE MIR 0 262 10 184 236 18 18 chr1 93216728 93216783 -188976881 - MER5A DNA MER1_type -6 183 129 2088 132 0 3 chr1 93216791 93217102 -188976562 + AluSx SINE Alu 1 310 -2 316 348 97 0 chr1 93217180 93217335 -188976329 + MIR SINE MIR 49 218 -44 245 50 0 25 chr1 93217404 93217444 -188976220 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1917 140 0 7 chr1 93217446 93217731 -188975933 - AluSx SINE Alu -29 283 1 287 55 455 0 chr1 93217931 93217986 -188975678 - MADE1 DNA Mariner 0 80 1 8010 13 2 0 chr1 93218184 93219688 -188973976 + L1HS LINE L1 4647 6153 -2 270 221 0 0 chr1 93219695 93219790 -188973874 + A-rich Low_complexity Low_complexity 1 95 0 400 231 48 102 chr1 93219862 93220009 -188973655 + MIR SINE MIR 53 191 -71 555 299 24 18 chr1 93221257 93221424 -188972240 + MIR SINE MIR 25 192 -70 22 0 0 0 chr1 93221479 93221501 -188972163 + AT_rich Low_complexity Low_complexity 1 22 0 846 295 36 44 chr1 93222807 93223298 -188970366 - L2 LINE L2 -62 3251 2763 1248 99 0 0 chr1 93223424 93223586 -188970078 + AluY SINE Alu 132 293 -18 260 401 44 72 chr1 93223767 93224086 -188969578 + L2 LINE L2 2963 3272 0 1916 182 0 0 chr1 93224123 93224431 -188969233 - AluJb SINE Alu 0 312 5 519 347 85 43 chr1 93225086 93225859 -188967805 + L3 LINE CR1 675 1576 -1 186 257 203 0 chr1 93225966 93226040 -188967624 - MIR SINE MIR -16 246 158 182 294 0 20 chr1 93226179 93226230 -188967434 - MIR SINE MIR 0 262 213 6147 31 0 0 chr1 93226242 93226973 -188966691 - L1PA4 LINE L1 -3 6152 5422 460 271 60 23 chr1 93226993 93227126 -188966538 - MIR SINE MIR -120 142 5 216 0 0 0 chr1 93229248 93229272 -188964392 + (CA)n Simple_repeat Simple_repeat 1 24 0 312 346 101 56 chr1 93229328 93229724 -188963940 + L2 LINE L2 2207 2620 -694 229 132 0 0 chr1 93230006 93230044 -188963620 + Alu SINE Alu 255 292 -9 825 180 74 66 chr1 93231358 93231614 -188962050 - L1MA9 LINE L1 -36 6276 6019 594 272 86 4 chr1 93233174 93233406 -188960258 - L1MC4a LINE L1 -1894 5914 5664 253 353 33 8 chr1 93233421 93233543 -188960121 - MIR SINE MIR -72 190 66 368 236 86 14 chr1 93234904 93235044 -188958620 - L1ME4a LINE L1 -13 6108 5959 237 337 107 51 chr1 93235351 93235529 -188958135 + MER5A DNA MER1_type 1 188 -1 250 336 53 18 chr1 93235832 93235945 -188957719 - MIR3 SINE MIR -23 185 69 21 0 0 0 chr1 93236206 93236227 -188957437 + AT_rich Low_complexity Low_complexity 1 21 0 570 336 106 14 chr1 93236285 93236654 -188957010 + LTR16B LTR ERVL 62 464 0 190 414 10 10 chr1 93237396 93237500 -188956164 - L2 LINE L2 -223 3049 2946 239 348 99 0 chr1 93237510 93237691 -188955973 - MIR SINE MIR -18 244 46 21 0 0 0 chr1 93239192 93239213 -188954451 + AT_rich Low_complexity Low_complexity 1 21 0 1385 292 60 23 chr1 93239223 93239710 -188953954 + MLT2F LTR ERVL 1 505 -158 33 25 0 0 chr1 93240195 93240235 -188953429 + AT_rich Low_complexity Low_complexity 1 40 0 206 75 47 65 chr1 93240235 93240342 -188953322 + (TATAA)n Simple_repeat Simple_repeat 3 107 0 352 351 105 20 chr1 93240561 93240857 -188952807 + L2 LINE L2 2988 3308 -5 2288 70 13 3 chr1 93241025 93241324 -188952340 - AluY SINE Alu -9 302 1 256 211 0 0 chr1 93241512 93241564 -188952100 - L2 LINE L2 0 3313 3262 235 337 45 11 chr1 93242666 93242755 -188950909 - L2 LINE L2 -2506 808 717 394 355 58 0 chr1 93242769 93242890 -188950774 + L2 LINE L2 3136 3263 -9 225 0 0 0 chr1 93242972 93242997 -188950667 + (A)n Simple_repeat Simple_repeat 1 25 0 476 267 90 42 chr1 93243361 93243649 -188950015 + L1MC/D LINE L1 5521 5822 -1986 15139 142 40 28 chr1 93243743 93244928 -188948736 + Tigger2 DNA MER2_type 8 1178 -1540 2292 92 0 22 chr1 93244928 93245243 -188948421 + AluY SINE Alu 1 308 -3 15139 142 40 28 chr1 93245243 93246624 -188947040 + Tigger2 DNA MER2_type 1178 2609 -109 2176 115 3 10 chr1 93246624 93246938 -188946726 - AluSq SINE Alu -1 312 1 15139 142 40 28 chr1 93246938 93247049 -188946615 + Tigger2 DNA MER2_type 2609 2717 -1 976 245 206 68 chr1 93247202 93248168 -188945496 - LTR28 LTR ERV1 -18 1737 1 211 348 93 0 chr1 93248325 93248443 -188945221 + L2 LINE L2 1295 1423 -1891 2539 105 8 0 chr1 93248492 93248844 -188944820 - THE1A LTR MaLR 0 355 1 291 331 128 35 chr1 93248865 93249372 -188944292 + L2 LINE L2 1574 2127 -1187 439 291 42 46 chr1 93249389 93249650 -188944014 + MER102b DNA MER1_type 49 308 -33 260 234 32 21 chr1 93249662 93249756 -188943908 - Charlie7 DNA MER1_type 0 2612 2518 608 322 30 66 chr1 93249760 93250334 -188943330 - L1MEd LINE L1 -5186 933 381 246 330 9 9 chr1 93250531 93250643 -188943021 - L1MEd LINE L1 -6006 113 2 916 234 310 11 chr1 93250644 93251350 -188942314 - Charlie7 DNA MER1_type -79 2533 1617 1140 224 14 36 chr1 93251440 93251717 -188941947 - L1MD3 LINE L1 -311 7684 7414 312 313 62 0 chr1 93251715 93251859 -188941805 - L1M4 LINE L1 -2207 3939 3787 * 516 252 79 67 chr1 93251866 93252217 -188941447 - L1ME LINE L1 -527 5643 5288 2250 116 3 0 chr1 93252275 93252586 -188941078 - AluSx SINE Alu 0 312 1 315 226 11 54 chr1 93252586 93252679 -188940985 - Charlie7 DNA MER1_type -1015 1597 1509 308 333 68 26 chr1 93252757 93252874 -188940790 - Charlie7 DNA MER1_type -2325 287 166 333 302 43 58 chr1 93253255 93253394 -188940270 + L2 LINE L2 3136 3272 0 202 356 93 0 chr1 93254608 93254726 -188938938 + L3 LINE CR1 1324 1452 -125 1365 209 68 51 chr1 93254783 93255251 -188938413 - Charlie1b DNA MER1_type -9 514 39 321 26 0 0 chr1 93255761 93255799 -188937865 + (TG)n Simple_repeat Simple_repeat 2 39 0 290 327 100 18 chr1 93255946 93256056 -188937608 + L2 LINE L2 3154 3272 0 256 380 93 7 chr1 93256181 93256331 -188937333 - L3 LINE CR1 -11 1566 1404 180 299 287 0 chr1 93256746 93256833 -188936831 - L2 LINE L2 -32 3240 3129 23 54 0 0 chr1 93258308 93258345 -188935319 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr1 93258476 93258506 -188935158 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr1 93259836 93259874 -188933790 + AT_rich Low_complexity Low_complexity 1 38 0 254 402 30 12 chr1 93260191 93260360 -188933304 - L2 LINE L2 -5 3267 3096 251 320 21 31 chr1 93261120 93261217 -188932447 + MIR SINE MIR 47 142 -66 218 182 23 0 chr1 93261418 93261462 -188932202 + L2 LINE L2 3269 3313 0 1835 132 7 7 chr1 93261501 93261797 -188931867 + AluSx SINE Alu 17 312 0 21 0 0 0 chr1 93263363 93263384 -188930280 + AT_rich Low_complexity Low_complexity 1 21 0 2143 75 11 0 chr1 93264283 93264565 -188929099 + AluY SINE Alu 1 285 -26 217 309 191 0 chr1 93264567 93264661 -188929003 - MIR SINE MIR -140 122 11 222 176 0 0 chr1 93265599 93265650 -188928014 + (TA)n Simple_repeat Simple_repeat 1 51 0 670 255 160 0 chr1 93265655 93265867 -188927797 + MIR SINE MIR 12 257 -5 2289 101 0 3 chr1 93267426 93267732 -188925932 - AluSx SINE Alu -7 305 1 482 281 113 69 chr1 93267986 93269140 -188924524 - L1ME3A LINE L1 -282 6386 5117 222 37 0 0 chr1 93269140 93269167 -188924497 + (TTA)n Simple_repeat Simple_repeat 1 27 0 482 281 113 69 chr1 93269167 93269745 -188923919 - L1ME3A LINE L1 -1551 5117 4566 270 0 0 0 chr1 93270938 93270968 -188922696 + (TG)n Simple_repeat Simple_repeat 2 31 0 689 197 121 25 chr1 93270968 93271166 -188922498 - L1MB7 LINE L1 -10 6174 5958 1952 262 102 22 chr1 93271166 93272708 -188920956 - L1M4 LINE L1 -3263 3381 1600 4213 260 23 37 chr1 93272739 93274079 -188919585 - L1M4 LINE L1 -5201 1341 20 189 0 0 0 chr1 93274317 93274338 -188919326 + (CA)n Simple_repeat Simple_repeat 1 21 0 2935 149 101 11 chr1 93274577 93275140 -188918524 + MER39 LTR ERV1 90 703 -4 368 309 16 16 chr1 93275925 93276051 -188917613 - MIR3 SINE MIR -1 207 82 1822 194 78 37 chr1 93276371 93276856 -188916808 + MLT1D LTR MaLR 1 505 0 5315 136 11 2 chr1 93278226 93279803 -188913861 - L1MA1 LINE L1 -4 6298 4592 188 297 144 18 chr1 93284587 93284698 -188908966 - L2 LINE L2 -263 3050 2926 917 191 35 0 chr1 93284851 93285024 -188908640 + AluJb SINE Alu 121 299 -13 206 250 145 13 chr1 93285053 93285129 -188908535 + MIR SINE MIR 176 261 -1 509 258 21 96 chr1 93285315 93285555 -188908109 + L2 LINE L2 3085 3306 -7 4182 173 49 48 chr1 93285565 93286167 -188907497 + L1MD1 LINE L1 5265 5870 -372 522 0 0 0 chr1 93286167 93286225 -188907439 + (CATAA)n Simple_repeat Simple_repeat 5 62 0 4182 173 49 48 chr1 93286225 93286599 -188907065 + L1MD1 LINE L1 5870 6242 0 483 259 80 12 chr1 93286646 93286808 -188906856 - MIR SINE MIR -10 252 80 754 223 55 29 chr1 93286839 93287113 -188906551 - L1MC5 LINE L1 -52 7909 7629 2503 279 65 34 chr1 93288763 93290127 -188903537 + L1MEc LINE L1 58 1644 -4573 463 286 51 29 chr1 93290412 93290587 -188903077 + L2 LINE L2 299 477 -2837 24 32 0 0 chr1 93291092 93291123 -188902541 + AT_rich Low_complexity Low_complexity 1 31 0 1939 172 3 0 chr1 93291521 93291829 -188901835 - AluSx SINE Alu -1 311 3 461 282 90 31 chr1 93292518 93292882 -188900782 + LTR16B LTR ERVL 1 464 0 296 227 13 0 chr1 93293267 93293342 -188900322 - MER116 DNA Mariner 0 80 5 1581 159 37 0 chr1 93293603 93293904 -188899760 + AluJb SINE Alu 3 313 0 2529 223 65 9 chr1 93294163 93294827 -188898837 - Tigger6a DNA MER2_type -22 1061 361 522 139 0 0 chr1 93294827 93294913 -188898751 + (TTCC)n Simple_repeat Simple_repeat 1 86 0 628 240 0 0 chr1 93294916 93295041 -188898623 - FLAM_A SINE Alu -6 127 3 787 65 14 22 chr1 93295055 93295194 -188898470 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 1867 210 8 3 chr1 93295208 93295584 -188898080 - Tigger6a DNA MER2_type -704 379 2 292 307 85 7 chr1 93295617 93295770 -188897894 + L2 LINE L2 3149 3313 0 765 292 29 5 chr1 93295896 93296105 -188897559 + MIR SINE MIR 48 261 -1 224 149 21 0 chr1 93296247 93296294 -188897370 + (TG)n Simple_repeat Simple_repeat 1 48 0 1705 283 40 25 chr1 93297213 93298271 -188895393 - L1ME3A LINE L1 -164 6006 4933 692 201 35 0 chr1 93298601 93298745 -188894919 - L1MB1 LINE L1 0 6168 6020 318 151 19 0 chr1 93298745 93298798 -188894866 + L2 LINE L2 2283 2336 -978 1747 251 33 41 chr1 93298799 93299340 -188894324 + MER34 LTR ERV1 1 537 -5 604 303 29 12 chr1 93299340 93299581 -188894083 + L2 LINE L2 2332 2576 -738 813 226 97 23 chr1 93299735 93299992 -188893672 + L2 LINE L2 2558 2833 -481 21 0 0 0 chr1 93300602 93300623 -188893041 + AT_rich Low_complexity Low_complexity 1 21 0 354 271 47 9 chr1 93301169 93301276 -188892388 - Charlie2 DNA MER1_type -2748 114 4 373 338 81 76 chr1 93302610 93302944 -188890720 - HAL1b LINE L1 -576 772 441 1613 186 0 25 chr1 93302944 93303085 -188890579 + AluJo SINE Alu 1 144 -168 321 0 61 0 chr1 93303085 93303134 -188890530 + (TA)n Simple_repeat Simple_repeat 2 53 0 1613 186 0 25 chr1 93303134 93303310 -188890354 + AluJo SINE Alu 144 310 -2 373 338 81 76 chr1 93303310 93303676 -188889988 - HAL1b LINE L1 -907 441 68 204 190 69 0 chr1 93304114 93304172 -188889492 + CT-rich Low_complexity Low_complexity 1 62 0 329 246 52 27 chr1 93304212 93304347 -188889317 + MIR SINE MIR 99 238 -24 31 92 0 0 chr1 93304383 93304470 -188889194 + AT_rich Low_complexity Low_complexity 1 87 0 26 0 0 0 chr1 93305073 93305099 -188888565 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr1 93305402 93305440 -188888224 + AT_rich Low_complexity Low_complexity 1 38 0 1032 267 41 64 chr1 93306026 93306629 -188887035 + L1MC5 LINE L1 6616 7223 -738 393 207 0 46 chr1 93306822 93306909 -188886755 + L2 LINE L2 3229 3311 -2 225 291 36 0 chr1 93308377 93308432 -188885232 + L2 LINE L2 3121 3177 -95 196 318 93 37 chr1 93312784 93312891 -188880773 - L2 LINE L2 -8 3305 3193 1065 200 9 18 chr1 93315319 93315539 -188878125 + MER20 DNA MER1_type 2 219 0 1048 294 93 69 chr1 93315680 93316519 -188877145 - L1M4 LINE L1 -2896 3250 2378 1123 236 70 17 chr1 93316519 93316863 -188876801 + MLT1A1 LTR MaLR 4 365 0 1048 294 93 69 chr1 93316863 93317099 -188876565 - L1M4 LINE L1 -3768 2378 2149 922 240 77 5 chr1 93317134 93317355 -188876309 - MER8 DNA MER2_type 0 239 3 189 269 0 0 chr1 93317389 93317456 -188876208 + CT-rich Low_complexity Low_complexity 3 69 0 1046 249 0 4 chr1 93318961 93319186 -188874478 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr1 93319796 93319817 -188873847 + AT_rich Low_complexity Low_complexity 1 21 0 344 296 90 97 chr1 93321081 93321537 -188872127 + MLT1J LTR MaLR 7 459 -52 204 97 0 0 chr1 93321551 93321582 -188872082 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1334 218 40 93 chr1 93324485 93325013 -188868651 - MLT1D LTR MaLR -5 500 1 382 302 116 0 chr1 93326165 93326294 -188867370 - MER45A DNA AcHobo -34 144 1 587 267 91 43 chr1 93326486 93326598 -188867066 + MIR SINE MIR 20 125 -137 15515 139 48 5 chr1 93326598 93329214 -188864450 + Tigger4(Zombi) DNA MER2_type 1 2727 -4 587 267 91 43 chr1 93329214 93329333 -188864331 + MIR SINE MIR 125 262 0 21 0 0 0 chr1 93329470 93329491 -188864173 + AT_rich Low_complexity Low_complexity 1 21 0 220 281 18 0 chr1 93329577 93329634 -188864030 - L2 LINE L2 -2 3311 3254 460 203 0 0 chr1 93331899 93331978 -188861686 + Tigger5 DNA MER2_type 1 79 -2244 255 264 0 0 chr1 93331980 93332033 -188861631 - Tigger5 DNA MER2_type -6 2317 2265 682 273 35 6 chr1 93332060 93332232 -188861432 - MER45A DNA AcHobo -1 177 1 270 143 0 0 chr1 93332456 93332505 -188861159 + (GA)n Simple_repeat Simple_repeat 2 50 0 237 225 99 14 chr1 93333680 93333751 -188859913 + HsTC2 DNA Tc2 3 79 -1819 1017 185 57 61 chr1 93334005 93334315 -188859349 + MER66A LTR ERV1 97 344 -134 4525 121 174 98 chr1 93334336 93335762 -188857902 - pTR5 LTR ERV1 0 2438 744 459 182 23 0 chr1 93335762 93335850 -188857814 + MER66A LTR ERV1 385 474 -4 5861 229 60 33 chr1 93335858 93337451 -188856213 + MER66A-int LTR ERV1 1 1637 -5039 * 7338 222 47 33 chr1 93337433 93339187 -188854477 + MER66A-int LTR ERV1 1282 3417 -3190 305 286 11 0 chr1 93339187 93339278 -188854386 + LTR57-int LTR ERVL 1320 1411 -3932 7338 222 47 33 chr1 93339278 93339307 -188854357 + MER66A-int LTR ERV1 3417 3444 -3163 1751 167 71 57 chr1 93339298 93339905 -188853759 + MER66A-int LTR ERV1 3142 3739 -2937 * 2027 123 0 14 chr1 93339905 93340210 -188853454 - AluSg SINE Alu 0 301 1 1751 167 71 57 chr1 93340210 93340347 -188853317 + MER66A-int LTR ERV1 3739 4433 -2243 310 301 60 0 chr1 93340347 93340430 -188853234 + MER4D LTR ERV1 73 160 -712 309 190 155 78 chr1 93340430 93340546 -188853118 + PRIMA41-int LTR ERV1 5915 6039 -1717 2400 146 45 21 chr1 93340562 93340980 -188852684 + PRIMA41-int LTR ERV1 6248 6675 -1 1146 172 82 52 chr1 93341087 93341355 -188852309 + MER66A LTR ERV1 203 478 0 228 407 50 0 chr1 93341358 93341498 -188852166 + MIR SINE MIR 46 192 -70 4118 191 74 14 chr1 93341673 93342485 -188851179 + MER21B LTR ERV1 1 861 -2 1751 138 90 36 chr1 93342597 93342953 -188850711 - THE1C LTR MaLR 0 375 1 312 208 0 0 chr1 93342988 93343041 -188850623 - L2 LINE L2 -20 3293 3241 493 289 8 0 chr1 93343084 93343212 -188850452 + MIR SINE MIR 109 237 -25 853 279 53 0 chr1 93343262 93343488 -188850176 + MIR SINE MIR 21 258 -4 1027 210 24 28 chr1 93343507 93343755 -188849909 + L1ME2 LINE L1 5909 6155 -9 321 310 60 0 chr1 93344009 93344125 -188849539 + MIR3 SINE MIR 85 207 -1 453 331 130 19 chr1 93347640 93348063 -188845601 - L1 LINE L1 -816 5330 4861 854 271 59 17 chr1 93348430 93348835 -188844829 + L1ME3A LINE L1 5204 5635 -531 2755 166 9 43 chr1 93348835 93349396 -188844268 + LTR27 LTR ERV1 3 544 -92 464 234 35 35 chr1 93349400 93349541 -188844123 + LTR27 LTR ERV1 494 634 -2 1198 245 103 25 chr1 93349544 93349714 -188843950 + L1ME3A LINE L1 5633 5788 -382 402 239 46 86 chr1 93349714 93349911 -188843753 - MER5A DNA MER1_type 0 189 1 1198 245 103 25 chr1 93349911 93350148 -188843516 + L1ME3A LINE L1 5788 6072 -98 730 169 0 74 chr1 93351997 93352145 -188841519 + FRAM SINE Alu 5 141 -35 207 290 0 0 chr1 93352166 93352228 -188841436 + A-rich Low_complexity Low_complexity 1 62 0 249 244 22 78 chr1 93352340 93352430 -188841234 + L2 LINE L2 2677 2761 -553 327 305 93 25 chr1 93352562 93352680 -188840984 + L2 LINE L2 3138 3263 -9 2083 128 0 0 chr1 93352682 93352971 -188840693 + AluSx SINE Alu 1 289 -23 2651 169 74 60 chr1 93353969 93354618 -188839046 + MER39 LTR ERV1 1 707 0 992 284 99 63 chr1 93356137 93356807 -188836857 + L2 LINE L2 2593 3286 -27 1047 224 61 66 chr1 93356809 93356845 -188836819 - MLT1A1 LTR MaLR -2 363 328 2283 99 41 36 chr1 93356845 93357207 -188836457 - THE1B LTR MaLR 0 364 1 1047 224 61 66 chr1 93357207 93357532 -188836132 - MLT1A1 LTR MaLR -37 328 4 579 353 48 55 chr1 93357620 93358017 -188835647 + L2 LINE L2 2844 3237 -35 1997 138 3 3 chr1 93358810 93359155 -188834509 + AluJb SINE Alu 1 345 0 758 218 41 0 chr1 93360176 93360346 -188833318 + MER45A DNA AcHobo 1 177 -1 659 269 129 35 chr1 93361754 93362040 -188831624 - LTR16C LTR ERVL -1 490 178 397 274 28 0 chr1 93362581 93362687 -188830977 - L2 LINE L2 -1 3312 3204 187 146 0 42 chr1 93365215 93365263 -188828401 + (GAAA)n Simple_repeat Simple_repeat 3 48 0 735 143 107 0 chr1 93365933 93366101 -188827563 - MER53 DNA DNA 0 189 4 609 290 78 5 chr1 93367732 93367925 -188825739 - MIR SINE MIR -6 256 50 1300 95 9 33 chr1 93368074 93368285 -188825379 - L1PB2 LINE L1 -2 6149 5944 2310 87 0 0 chr1 93368468 93368766 -188824898 + AluSg SINE Alu 1 298 -12 1266 173 69 106 chr1 93369758 93370134 -188823530 - MLT1A1 LTR MaLR 0 365 4 193 289 66 26 chr1 93370417 93370493 -188823171 + L2 LINE L2 3230 3308 -5 241 258 0 16 chr1 93371700 93371762 -188821902 - LTR33A LTR ERVL -19 504 444 3368 241 59 42 chr1 93372063 93372208 -188821456 + L1MC4 LINE L1 6459 6600 -1442 239 0 32 0 chr1 93372208 93372239 -188821425 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 3368 241 59 42 chr1 93372239 93372494 -188821170 + L1MC4 LINE L1 6600 6849 -1193 208 0 0 59 chr1 93372494 93372528 -188821136 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 3368 241 59 42 chr1 93372528 93373305 -188820359 + L1MC4 LINE L1 6849 7657 -385 273 225 63 45 chr1 93373660 93373771 -188819893 - MLT2E LTR ERVL -488 140 28 2191 72 0 34 chr1 93373889 93374232 -188819432 + AluY SINE Alu 1 333 0 330 316 181 35 chr1 93374286 93374634 -188819030 - L2 LINE L2 0 3313 2915 274 330 94 38 chr1 93374693 93374905 -188818759 - L2 LINE L2 -580 2734 2511 722 182 0 15 chr1 93375490 93375622 -188818042 + FLAM_C SINE Alu 1 130 -3 180 125 0 0 chr1 93375762 93375794 -188817870 + (CA)n Simple_repeat Simple_repeat 2 33 0 288 0 0 0 chr1 93375794 93375826 -188817838 + (TAA)n Simple_repeat Simple_repeat 2 33 0 336 315 79 35 chr1 93375829 93376032 -188817632 - HAL1 LINE L1 -57 2450 2239 654 282 85 16 chr1 93376683 93376999 -188816665 - HAL1 LINE L1 -695 1812 1475 377 179 12 0 chr1 93377023 93377107 -188816557 + CT-rich Low_complexity Low_complexity 3 87 0 228 306 33 60 chr1 93377109 93377410 -188816254 - HAL1 LINE L1 -1046 1461 1169 329 372 35 22 chr1 93377712 93377938 -188815726 - L2 LINE L2 -463 2851 2623 225 0 0 0 chr1 93379161 93379186 -188814478 + (T)n Simple_repeat Simple_repeat 1 25 0 213 159 0 0 chr1 93379277 93379321 -188814343 + A-rich Low_complexity Low_complexity 1 44 0 192 40 0 0 chr1 93379679 93379704 -188813960 + (CAGC)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 93381844 93381865 -188811799 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 93382773 93382808 -188810856 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 93384669 93384691 -188808973 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 93384850 93384890 -188808774 + AT_rich Low_complexity Low_complexity 1 40 0 223 273 109 0 chr1 93387023 93387078 -188806586 - MIR SINE MIR -110 152 92 567 292 66 25 chr1 93387406 93387649 -188806015 - MIR SINE MIR -8 254 2 23 0 0 0 chr1 93388125 93388148 -188805516 + AT_rich Low_complexity Low_complexity 1 23 0 361 283 94 25 chr1 93388168 93388327 -188805337 + MIR SINE MIR 20 189 -73 329 300 50 50 chr1 93388326 93388446 -188805218 + L2 LINE L2 3151 3270 -2 * 25 65 0 0 chr1 93388499 93388545 -188805119 + AT_rich Low_complexity Low_complexity 1 46 0 714 244 55 20 chr1 93388552 93388876 -188804788 - LTR40a LTR ERVL -3 516 146 300 156 0 0 chr1 93388878 93388923 -188804741 - LTR40b LTR ERVL -417 45 1 417 341 122 34 chr1 93389346 93389970 -188803694 + L2 LINE L2 1729 2407 -907 190 247 71 47 chr1 93390826 93390911 -188802753 + L2 LINE L2 3227 3313 0 437 297 48 6 chr1 93391463 93391645 -188802019 - MIR SINE MIR -52 210 22 205 200 0 0 chr1 93393787 93393827 -188799837 + T-rich Low_complexity Low_complexity 1 40 0 270 0 0 0 chr1 93396536 93396566 -188797098 + (CA)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr1 93396565 93396593 -188797071 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 378 0 0 0 chr1 93397024 93397066 -188796598 + (CA)n Simple_repeat Simple_repeat 2 43 0 469 261 171 0 chr1 93397207 93397383 -188796281 + MIR SINE MIR 13 218 -44 22 35 0 0 chr1 93397575 93397604 -188796060 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr1 93397984 93398009 -188795655 + (A)n Simple_repeat Simple_repeat 1 25 0 449 305 80 7 chr1 93398016 93398167 -188795497 - MIR3 SINE MIR -5 203 42 24 0 0 0 chr1 93398465 93398489 -188795175 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr1 93400582 93400603 -188793061 + (ATG)n Simple_repeat Simple_repeat 2 22 0 408 55 0 0 chr1 93402578 93402633 -188791031 + (CA)n Simple_repeat Simple_repeat 2 56 0 208 232 18 0 chr1 93403486 93403542 -188790122 + (CA)n Simple_repeat Simple_repeat 1 57 0 229 270 40 0 chr1 93405401 93405475 -188788189 - MER117 DNA MER1_type -44 153 77 27 49 0 0 chr1 93405685 93405726 -188787938 + AT_rich Low_complexity Low_complexity 1 41 0 289 260 0 62 chr1 93405909 93406005 -188787659 - LTR33 LTR ERVL -158 363 274 436 316 32 0 chr1 93406062 93406220 -188787444 - LTR33 LTR ERVL -354 167 5 223 384 18 0 chr1 93406351 93406463 -188787201 - L2 LINE L2 -196 3076 2963 196 324 151 63 chr1 93406497 93406781 -188786883 - L2 LINE L2 -429 2885 2577 1635 215 8 14 chr1 93406829 93407196 -188786468 - MLT1A1 LTR MaLR 0 365 1 2306 253 24 25 chr1 93407196 93407786 -188785878 - MLT1A1-int LTR MaLR 0 1735 1147 3319 211 73 51 chr1 93407887 93408753 -188784911 - MLT1A1-int LTR MaLR -849 886 2 1788 175 8 40 chr1 93408756 93409130 -188784534 - MLT1A1 LTR MaLR -2 426 1 504 250 18 9 chr1 93409837 93409949 -188783715 - MIR SINE MIR -108 154 42 1027 195 73 42 chr1 93410088 93410401 -188783263 - L1ME1 LINE L1 -5 6161 5839 228 136 0 0 chr1 93410436 93410456 -188783208 + (T)n Simple_repeat Simple_repeat 1 20 -24 2692 59 3 0 chr1 93410456 93410796 -188782868 - L1PA7 LINE L1 0 6154 5814 228 136 0 0 chr1 93410796 93410819 -188782845 + (T)n Simple_repeat Simple_repeat 19 44 0 397 75 0 0 chr1 93410819 93410872 -188782792 - L1PA7 LINE L1 -320 5834 5782 2007 169 3 11 chr1 93411407 93411773 -188781891 + MLT1A1 LTR MaLR 1 363 -2 180 97 0 0 chr1 93412520 93412551 -188781113 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 652 266 31 21 chr1 93413484 93413676 -188779988 - MIR SINE MIR -43 219 26 447 290 31 21 chr1 93414420 93414613 -188779051 + HAL1b LINE L1 333 527 -821 408 326 50 40 chr1 93415953 93416176 -188777488 + HAL1b LINE L1 105 324 -2117 2181 108 0 14 chr1 93416176 93416473 -188777191 - AluSg SINE Alu -17 293 1 408 326 50 40 chr1 93416473 93416668 -188776996 + HAL1b LINE L1 324 1607 -834 2167 119 0 0 chr1 93416970 93417280 -188776384 + AluSg SINE Alu 1 310 0 21 82 0 0 chr1 93417379 93417428 -188776236 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr1 93417519 93417543 -188776121 + AT_rich Low_complexity Low_complexity 1 24 0 494 331 78 70 chr1 93417627 93418168 -188775496 + L1ME LINE L1 5257 5801 -320 245 217 0 0 chr1 93418199 93418245 -188775419 + L1MC4a LINE L1 7302 7347 -461 422 242 21 0 chr1 93418246 93418341 -188775323 + L1MC4 LINE L1 7387 7483 -559 806 197 66 93 chr1 93418398 93418491 -188775173 + L1MC4 LINE L1 7487 7581 -461 1543 158 27 34 chr1 93418491 93418788 -188774876 + AluJb SINE Alu 1 295 -17 806 197 66 93 chr1 93418788 93419048 -188774616 + L1MC4 LINE L1 7581 7923 -119 2098 123 3 3 chr1 93419048 93419381 -188774283 - L1PA14 LINE L1 -1 6160 5828 806 197 66 93 chr1 93419381 93419498 -188774166 + L1MC4 LINE L1 7923 8042 0 204 40 0 0 chr1 93421260 93421285 -188772379 + (A)n Simple_repeat Simple_repeat 1 25 0 466 278 66 7 chr1 93421482 93421633 -188772031 + MIR SINE MIR 48 207 -55 378 0 0 0 chr1 93421675 93421717 -188771947 + (TA)n Simple_repeat Simple_repeat 1 42 0 603 131 0 0 chr1 93422390 93422474 -188771190 - AluSg/x SINE Alu -18 294 211 6944 58 0 0 chr1 93422499 93423421 -188770243 - L1PA5 LINE L1 -2 6152 5232 844 132 0 15 chr1 93423418 93423554 -188770110 - FLAM_C SINE Alu -17 126 1 775 274 31 41 chr1 93424179 93424471 -188769193 + L3b LINE CR1 1106 1394 -189 4491 216 57 17 chr1 93424913 93426251 -188767413 + Charlie1a DNA MER1_type 1 1455 0 434 347 6 35 chr1 93427134 93427304 -188766360 - LTR16A LTR ERVL -148 302 138 241 259 155 0 chr1 93427818 93427876 -188765788 - MIR3 SINE MIR -13 195 129 * 385 317 88 34 chr1 93427870 93428075 -188765589 - MIR SINE MIR 0 262 47 328 268 0 52 chr1 93428684 93428781 -188764883 - L1ME3A LINE L1 -15 6155 6064 181 288 29 88 chr1 93429180 93429350 -188764314 - L2 LINE L2 -817 2497 2338 231 204 0 0 chr1 93429499 93429548 -188764116 + GA-rich Low_complexity Low_complexity 2 50 0 213 352 92 39 chr1 93429882 93430263 -188763401 - L2 LINE L2 -2048 1266 866 210 286 174 10 chr1 93430525 93430623 -188763041 - MIR SINE MIR -68 194 81 2041 116 54 40 chr1 93430627 93430997 -188762667 - THE1C LTR MaLR 0 375 1 276 217 0 0 chr1 93432333 93432425 -188761239 + (TA)n Simple_repeat Simple_repeat 2 93 0 317 300 0 0 chr1 93432428 93432518 -188761146 - L1MC4 LINE L1 -1339 6703 6614 198 0 0 0 chr1 93432546 93432568 -188761096 + (TG)n Simple_repeat Simple_repeat 2 23 0 25 0 0 0 chr1 93433165 93433190 -188760474 + AT_rich Low_complexity Low_complexity 1 25 0 308 264 11 11 chr1 93433238 93433325 -188760339 + MIR3 SINE MIR 111 197 -11 24 0 0 0 chr1 93434054 93434078 -188759586 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 93434337 93434365 -188759299 + AT_rich Low_complexity Low_complexity 1 28 0 203 86 0 29 chr1 93434480 93434515 -188759149 + (CATA)n Simple_repeat Simple_repeat 2 35 0 1797 104 96 0 chr1 93434680 93434950 -188758714 + AluSx SINE Alu 14 309 -3 21 0 0 0 chr1 93435681 93435702 -188757962 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 93436702 93436735 -188756929 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr1 93437270 93437291 -188756373 + (TAA)n Simple_repeat Simple_repeat 1 21 0 277 330 132 51 chr1 93437633 93437830 -188755834 + MLT1J1 LTR MaLR 65 277 -169 * 343 244 13 0 chr1 93437824 93437902 -188755762 + MLT1J LTR MaLR 375 453 -58 265 316 0 0 chr1 93438006 93438085 -188755579 + GA-rich Low_complexity Low_complexity 2 80 0 643 313 6 0 chr1 93438322 93438498 -188755166 - MIR SINE MIR -25 237 61 260 274 133 0 chr1 93439323 93439436 -188754228 + MIR SINE MIR 135 262 0 3490 82 352 0 chr1 93440063 93440674 -188752990 - LTR12 LTR ERV1 0 826 1 200 304 89 54 chr1 93440720 93440832 -188752832 - L2 LINE L2 -9 3263 3148 508 324 80 5 chr1 93441996 93442209 -188751455 - MIR SINE MIR -24 238 10 2141 117 0 0 chr1 93442525 93442825 -188750839 - AluY SINE Alu -11 300 1 221 365 0 0 chr1 93443596 93443670 -188749994 - MIR SINE MIR -136 126 53 2468 50 0 0 chr1 93443753 93444052 -188749612 - AluY SINE Alu -12 299 1 286 263 0 0 chr1 93444429 93444486 -188749178 + MIR SINE MIR 47 103 -159 190 276 198 35 chr1 93444538 93444654 -188749010 + MIR SINE MIR 128 262 0 22 0 0 0 chr1 93445173 93445195 -188748469 + AT_rich Low_complexity Low_complexity 1 22 0 328 296 31 25 chr1 93446299 93446461 -188747203 - MLT1J LTR MaLR -143 368 206 572 267 124 45 chr1 93446461 93446663 -188747001 + MER20 DNA MER1_type 1 218 -1 239 214 54 0 chr1 93446784 93446840 -188746824 + MLT1J LTR MaLR 3 61 -450 400 158 0 53 chr1 93446852 93446928 -188746736 - MER20 DNA MER1_type -117 102 31 1150 199 8 34 chr1 93447043 93447069 -188746595 + MLT1E3 LTR MaLR 1 26 -598 1939 168 21 21 chr1 93447069 93447444 -188746220 + THE1C LTR MaLR 1 375 0 1150 199 8 34 chr1 93447444 93447653 -188746011 + MLT1E3 LTR MaLR 26 230 -394 1128 185 112 4 chr1 93447660 93447892 -188745772 + AluJb SINE Alu 1 257 -55 1432 223 129 9 chr1 93447908 93448249 -188745415 + MLT1E3 LTR MaLR 243 624 0 382 325 84 20 chr1 93448293 93448506 -188745158 - MIR SINE MIR -20 242 12 24 53 0 0 chr1 93448534 93448572 -188745092 + AT_rich Low_complexity Low_complexity 1 38 0 436 312 95 13 chr1 93448937 93449168 -188744496 - MIR SINE MIR -12 250 1 920 214 222 41 chr1 93452407 93452919 -188740745 + MLT1E1 LTR MaLR 1 653 -1 207 0 0 0 chr1 93454536 93454559 -188739105 + (TTG)n Simple_repeat Simple_repeat 2 24 0 774 265 94 76 chr1 93454651 93455164 -188738500 + LTR33A LTR ERVL 1 522 -1 712 325 40 0 chr1 93455380 93455654 -188738010 + Charlie2b DNA MER1_type 389 673 -2109 1829 234 145 18 chr1 93455736 93456865 -188736799 + Charlie2a DNA MER1_type 1470 2773 -89 1755 196 25 40 chr1 93457995 93458036 -188735628 + MSTD LTR MaLR 1 41 -355 2053 108 11 0 chr1 93458036 93458364 -188735300 + AluSp SINE Alu 1 313 0 1755 196 25 40 chr1 93458364 93458724 -188734940 + MSTD LTR MaLR 41 396 0 302 262 168 9 chr1 93458857 93458964 -188734700 - MIR3 SINE MIR -4 204 81 455 302 64 23 chr1 93459044 93459216 -188734448 + MIR SINE MIR 28 206 -56 1366 196 35 28 chr1 93459812 93460098 -188733566 + AluJo SINE Alu 1 288 -24 2138 96 10 7 chr1 93460933 93461225 -188732439 - AluSc SINE Alu -16 293 1 421 130 43 0 chr1 93461619 93461688 -188731976 + MIR3 SINE MIR 103 174 -34 220 211 0 0 chr1 93461819 93461871 -188731793 + (TAA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr1 93461876 93461897 -188731767 + AT_rich Low_complexity Low_complexity 1 21 0 629 250 69 6 chr1 93462734 93462894 -188730770 + MLT1B LTR MaLR 1 170 -220 22 56 0 0 chr1 93463022 93463058 -188730606 + AT_rich Low_complexity Low_complexity 1 36 0 805 237 16 0 chr1 93463175 93463361 -188730303 + MLT1B LTR MaLR 183 371 -19 395 241 113 168 chr1 93463377 93463708 -188729956 + L2 LINE L2 2835 3130 -183 1945 141 27 14 chr1 93463708 93464076 -188729588 - L1MA5 LINE L1 -2 6298 5926 395 241 113 168 chr1 93464076 93464250 -188729414 + L2 LINE L2 3130 3312 -1 2150 124 7 0 chr1 93464255 93464562 -188729102 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 93464572 93464594 -188729070 + AT_rich Low_complexity Low_complexity 1 22 0 282 240 90 30 chr1 93464668 93464768 -188728896 - L2 LINE L2 0 3313 3208 621 304 129 60 chr1 93465733 93466184 -188727480 - L3 LINE CR1 -13 1564 1083 1671 135 14 3 chr1 93466567 93466855 -188726809 - L1MA4 LINE L1 -7 6293 6003 213 338 103 71 chr1 93466943 93467283 -188726381 + L2 LINE L2 2914 3264 -8 959 291 83 14 chr1 93467628 93468220 -188725444 - L1ME3A LINE L1 -266 5904 5272 736 260 104 51 chr1 93468263 93468890 -188724774 - L1ME3A LINE L1 -1098 5048 4389 23 33 0 0 chr1 93468897 93468927 -188724737 + AT_rich Low_complexity Low_complexity 1 30 0 1983 106 29 0 chr1 93469003 93469277 -188724387 - AluSc SINE Alu -11 298 17 23 54 0 0 chr1 93469347 93469384 -188724280 + AT_rich Low_complexity Low_complexity 1 37 0 351 237 33 5 chr1 93469807 93470028 -188723636 + (TA)n Simple_repeat Simple_repeat 1 227 0 201 203 174 29 chr1 93470395 93470464 -188723200 - MIR SINE MIR -114 148 70 564 314 83 4 chr1 93471609 93471851 -188721813 - MIR SINE MIR 0 262 2 22 56 0 0 chr1 93472727 93472763 -188720901 + AT_rich Low_complexity Low_complexity 1 36 0 204 346 19 19 chr1 93472846 93472950 -188720714 - MIR SINE MIR -87 121 18 2240 119 0 3 chr1 93474348 93474650 -188719014 - AluSx SINE Alu -11 301 1 204 40 0 0 chr1 93477128 93477153 -188716511 + (TTG)n Simple_repeat Simple_repeat 3 27 0 203 204 23 0 chr1 93478788 93478832 -188714832 + (CAA)n Simple_repeat Simple_repeat 1 45 0 464 345 126 34 chr1 93480312 93480939 -188712725 + L2 LINE L2 2584 3254 -18 2300 104 0 0 chr1 93481582 93481879 -188711785 - AluSc SINE Alu -12 297 1 1835 194 111 39 chr1 93482221 93482706 -188710958 - MLT2B1 LTR ERVL 0 520 1 738 333 44 13 chr1 93483800 93484118 -188709546 + L3 LINE CR1 1250 1577 0 363 207 17 9 chr1 93484126 93484242 -188709422 + CT-rich Low_complexity Low_complexity 3 119 0 276 299 54 34 chr1 93485321 93485468 -188708196 + L2 LINE L2 2282 2431 -883 210 232 18 18 chr1 93485602 93485658 -188708006 + L2 LINE L2 3217 3272 0 319 290 43 58 chr1 93486415 93486553 -188707111 + L2 LINE L2 3178 3313 0 32 0 0 0 chr1 93487229 93487261 -188706403 + AT_rich Low_complexity Low_complexity 1 32 0 256 316 44 9 chr1 93487328 93487442 -188706222 - MIR SINE MIR -119 143 26 411 38 0 0 chr1 93487455 93487508 -188706156 + (TG)n Simple_repeat Simple_repeat 2 54 0 380 294 87 56 chr1 93488198 93488429 -188705235 - MIR SINE MIR -2 260 23 1926 139 35 37 chr1 93488650 93489025 -188704639 - THE1C LTR MaLR -1 374 1 220 136 99 20 chr1 93489725 93489784 -188703880 + MIR SINE MIR 88 141 -67 28 71 0 0 chr1 93490203 93490259 -188703405 + AT_rich Low_complexity Low_complexity 1 56 0 857 253 109 1 chr1 93490458 93490752 -188702912 - L1ME4a LINE L1 -281 5840 5517 307 272 69 35 chr1 93490904 93491077 -188702587 - L1ME4a LINE L1 -812 5334 5156 256 274 133 0 chr1 93492044 93492157 -188701507 + MIR SINE MIR 135 262 0 3538 82 352 0 chr1 93492784 93493395 -188700269 - LTR12 LTR ERV1 0 826 1 208 304 89 54 chr1 93493441 93493553 -188700111 - L2 LINE L2 -9 3263 3148 505 324 80 5 chr1 93494717 93494930 -188698734 - MIR SINE MIR -24 238 10 2173 117 0 0 chr1 93495246 93495546 -188698118 - AluY SINE Alu -11 300 1 220 365 0 0 chr1 93496317 93496391 -188697273 - MIR SINE MIR -136 126 53 2529 50 0 0 chr1 93496474 93496775 -188696889 - AluY SINE Alu -10 301 1 287 263 0 0 chr1 93497152 93497209 -188696455 + MIR SINE MIR 47 103 -159 184 276 198 35 chr1 93497261 93497377 -188696287 + MIR SINE MIR 128 262 0 22 0 0 0 chr1 93497896 93497918 -188695746 + AT_rich Low_complexity Low_complexity 1 22 0 346 284 37 31 chr1 93499022 93499184 -188694480 - MLT1J LTR MaLR -143 368 206 555 272 124 45 chr1 93499184 93499386 -188694278 + MER20 DNA MER1_type 1 218 -1 239 214 54 0 chr1 93499507 93499563 -188694101 + MLT1J LTR MaLR 3 61 -450 404 158 0 53 chr1 93499575 93499651 -188694013 - MER20 DNA MER1_type -117 102 31 1149 182 13 38 chr1 93499766 93499792 -188693872 + MLT1E3 LTR MaLR 1 26 -598 1956 168 21 21 chr1 93499792 93500167 -188693497 + THE1C LTR MaLR 1 375 0 1149 182 13 38 chr1 93500167 93500376 -188693288 + MLT1E3 LTR MaLR 26 230 -394 1165 184 107 4 chr1 93500383 93500616 -188693048 + AluJb SINE Alu 1 257 -55 1440 223 129 9 chr1 93500632 93500973 -188692691 + MLT1E3 LTR MaLR 243 624 0 375 326 89 21 chr1 93501017 93501237 -188692427 - MIR SINE MIR -20 242 2 24 53 0 0 chr1 93501258 93501296 -188692368 + AT_rich Low_complexity Low_complexity 1 38 0 440 312 95 13 chr1 93501661 93501892 -188691772 - MIR SINE MIR -12 250 1 921 212 222 41 chr1 93505131 93505643 -188688021 + MLT1E1 LTR MaLR 1 653 -1 207 0 0 0 chr1 93507260 93507283 -188686381 + (TTG)n Simple_repeat Simple_repeat 2 24 0 796 265 94 76 chr1 93507375 93507888 -188685776 + LTR33A LTR ERVL 1 522 -1 702 321 40 0 chr1 93508104 93508378 -188685286 + Charlie2b DNA MER1_type 389 673 -2109 750 220 28 37 chr1 93508460 93508674 -188684990 + Charlie2a DNA MER1_type 1470 1681 -1181 1729 236 172 14 chr1 93508709 93509589 -188684075 + Charlie2a DNA MER1_type 1755 2773 -89 1764 196 25 40 chr1 93510721 93510762 -188682902 + MSTD LTR MaLR 1 41 -355 2070 112 11 0 chr1 93510762 93511090 -188682574 + AluSp SINE Alu 1 313 0 1764 196 25 40 chr1 93511090 93511450 -188682214 + MSTD LTR MaLR 41 396 0 299 262 168 9 chr1 93511583 93511690 -188681974 - MIR3 SINE MIR -4 204 81 456 302 64 23 chr1 93511770 93511942 -188681722 + MIR SINE MIR 28 206 -56 1390 196 35 28 chr1 93512538 93512824 -188680840 + AluJo SINE Alu 1 288 -24 2176 96 10 7 chr1 93513660 93513953 -188679711 - AluSc SINE Alu -15 294 1 424 130 43 0 chr1 93514348 93514417 -188679247 + MIR3 SINE MIR 103 174 -34 220 211 0 0 chr1 93514548 93514600 -188679064 + (TAA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr1 93514605 93514626 -188679038 + AT_rich Low_complexity Low_complexity 1 21 0 622 250 69 6 chr1 93515463 93515623 -188678041 + MLT1B LTR MaLR 1 170 -220 22 56 0 0 chr1 93515751 93515787 -188677877 + AT_rich Low_complexity Low_complexity 1 36 0 803 237 16 0 chr1 93515904 93516090 -188677574 + MLT1B LTR MaLR 183 371 -19 393 239 113 168 chr1 93516106 93516437 -188677227 + L2 LINE L2 2835 3130 -183 1939 141 27 14 chr1 93516437 93516805 -188676859 - L1MA5 LINE L1 -2 6298 5926 393 239 113 168 chr1 93516805 93516979 -188676685 + L2 LINE L2 3130 3312 -1 2179 124 7 0 chr1 93516984 93517291 -188676373 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 93517301 93517323 -188676341 + AT_rich Low_complexity Low_complexity 1 22 0 281 240 90 30 chr1 93517397 93517497 -188676167 - L2 LINE L2 0 3313 3208 617 304 129 60 chr1 93518462 93518913 -188674751 - L3 LINE CR1 -13 1564 1083 1664 135 14 3 chr1 93519296 93519584 -188674080 - L1MA4 LINE L1 -7 6293 6003 212 329 109 75 chr1 93519690 93520012 -188673652 + L2 LINE L2 2932 3264 -8 900 291 83 14 chr1 93520357 93520949 -188672715 - L1ME3A LINE L1 -266 5904 5272 658 263 102 51 chr1 93520992 93521620 -188672044 - L1ME3A LINE L1 -1098 5048 4389 1998 106 29 0 chr1 93521733 93522006 -188671658 - AluSc SINE Alu -12 297 17 23 54 0 0 chr1 93522076 93522113 -188671551 + AT_rich Low_complexity Low_complexity 1 37 0 351 237 33 5 chr1 93522536 93522757 -188670907 + (TA)n Simple_repeat Simple_repeat 1 227 0 202 203 174 29 chr1 93523124 93523193 -188670471 - MIR SINE MIR -114 148 70 549 314 83 4 chr1 93524338 93524580 -188669084 - MIR SINE MIR 0 262 2 22 56 0 0 chr1 93525456 93525492 -188668172 + AT_rich Low_complexity Low_complexity 1 36 0 205 346 19 19 chr1 93525575 93525679 -188667985 - MIR SINE MIR -87 121 18 2224 123 0 3 chr1 93527078 93527380 -188666284 - AluSx SINE Alu -11 301 1 204 40 0 0 chr1 93529858 93529883 -188663781 + (TTG)n Simple_repeat Simple_repeat 3 27 0 203 204 23 0 chr1 93531517 93531561 -188662103 + (CAA)n Simple_repeat Simple_repeat 1 45 0 464 346 126 33 chr1 93533040 93533666 -188659998 + L2 LINE L2 2584 3254 -18 2308 104 0 0 chr1 93534309 93534607 -188659057 - AluSc SINE Alu -11 298 1 1864 192 111 39 chr1 93534949 93535434 -188658230 - MLT2B1 LTR ERVL 0 520 1 738 333 44 13 chr1 93536528 93536846 -188656818 + L3 LINE CR1 1250 1577 0 363 207 17 9 chr1 93536854 93536970 -188656694 + CT-rich Low_complexity Low_complexity 3 119 0 284 293 54 34 chr1 93538049 93538196 -188655468 + L2 LINE L2 2282 2431 -883 210 232 18 18 chr1 93538330 93538386 -188655278 + L2 LINE L2 3217 3272 0 304 297 43 58 chr1 93539143 93539281 -188654383 + L2 LINE L2 3178 3313 0 32 0 0 0 chr1 93539958 93539990 -188653674 + AT_rich Low_complexity Low_complexity 1 32 0 256 316 44 9 chr1 93540057 93540171 -188653493 - MIR SINE MIR -119 143 26 393 39 0 0 chr1 93540184 93540235 -188653429 + (TG)n Simple_repeat Simple_repeat 2 52 0 380 294 87 56 chr1 93540926 93541157 -188652507 - MIR SINE MIR -2 260 23 1926 139 35 37 chr1 93541378 93541753 -188651911 - THE1C LTR MaLR -1 374 1 220 136 99 20 chr1 93542453 93542512 -188651152 + MIR SINE MIR 88 141 -67 28 71 0 0 chr1 93542931 93542987 -188650677 + AT_rich Low_complexity Low_complexity 1 56 0 857 253 109 1 chr1 93543186 93543480 -188650184 - L1ME4a LINE L1 -281 5840 5517 341 262 77 56 chr1 93543632 93543865 -188649799 - L1ME4a LINE L1 -812 5334 5097 359 279 132 39 chr1 93544023 93544410 -188649254 - HAL1 LINE L1 -77 2430 2008 1625 201 164 25 chr1 93544638 93545076 -188648588 - MLT1D LTR MaLR -2 503 5 709 278 76 18 chr1 93545208 93545431 -188648233 + MIR SINE MIR 1 236 -26 684 259 23 9 chr1 93545433 93545649 -188648015 - HAL1 LINE L1 -890 1617 1399 1221 303 43 5 chr1 93545928 93546371 -188647293 - LTR16B LTR ERVL -2 462 3 317 217 0 0 chr1 93547078 93547138 -188646526 - HERV16 LTR ERVL -612 4384 4325 1828 324 121 32 chr1 93547220 93547805 -188645859 - HERV16 LTR ERVL -3459 1537 1006 1080 205 41 108 chr1 93547805 93548220 -188645444 - MLT1B LTR MaLR 0 390 4 1828 324 121 32 chr1 93548220 93548954 -188644710 - HERV16 LTR ERVL -3990 1006 100 1550 265 55 11 chr1 93549043 93549477 -188644187 - LTR16B LTR ERVL -11 453 1 356 40 20 0 chr1 93550345 93550395 -188643269 + (TG)n Simple_repeat Simple_repeat 2 52 0 308 319 83 24 chr1 93551046 93551215 -188642449 - L2 LINE L2 0 3313 3135 1691 164 7 16 chr1 93551540 93551844 -188641820 + AluSx SINE Alu 1 301 -11 210 71 0 0 chr1 93552426 93552454 -188641210 + (TC)n Simple_repeat Simple_repeat 1 28 0 210 143 0 0 chr1 93552453 93552488 -188641176 + (CA)n Simple_repeat Simple_repeat 1 35 0 269 204 0 0 chr1 93554000 93554049 -188639615 + L2 LINE L2 3265 3313 0 226 310 88 18 chr1 93556659 93556772 -188636892 - L2 LINE L2 0 3313 3193 318 276 126 88 chr1 93557233 93557877 -188635787 + L1ME LINE L1 4126 4793 -1353 355 202 34 9 chr1 93558294 93558463 -188635201 + L1ME LINE L1 5289 5464 -702 261 256 0 26 chr1 93558624 93558702 -188634962 + L1P3 LINE L1 5695 5770 -384 309 282 14 0 chr1 93558791 93558862 -188634802 + MLT1H1 LTR MaLR 396 467 -88 438 345 68 5 chr1 93559397 93559588 -188634076 - L3 LINE CR1 -353 1224 1022 21 0 0 0 chr1 93560493 93560514 -188633150 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 93561028 93561066 -188632598 + AT_rich Low_complexity Low_complexity 1 38 0 3686 120 30 8 chr1 93561308 93561667 -188631997 - L1PB1 LINE L1 -3 6148 5769 285 75 0 0 chr1 93561667 93561707 -188631957 + (TA)n Simple_repeat Simple_repeat 2 41 0 3686 120 30 8 chr1 93561707 93561937 -188631727 - L1PB1 LINE L1 -382 5769 5546 197 329 63 38 chr1 93562986 93563065 -188630599 + MIR SINE MIR 36 116 -92 198 71 0 0 chr1 93563391 93563419 -188630245 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 579 264 35 98 chr1 93563419 93563761 -188629903 - L2 LINE L2 -13 3300 2980 2645 97 92 5 chr1 93563761 93564175 -188629489 + LTR7 LTR ERV1 1 450 0 19825 101 61 21 chr1 93564180 93567339 -188626325 + HERVH LTR ERV1 6 3290 -4423 3218 111 18 6 chr1 93567330 93567825 -188625839 + HERVH LTR ERV1 3493 3993 -3720 * 8159 108 7 2 chr1 93567889 93569037 -188624627 + HERVH LTR ERV1 3993 5146 -2567 1357 146 18 0 chr1 93569038 93569257 -188624407 + HERVH LTR ERV1 5597 5819 -1894 * 2262 113 47 16 chr1 93569255 93569635 -188624029 + HERVH LTR ERV1 7322 7713 0 2526 90 100 7 chr1 93569635 93570045 -188623619 + LTR7 LTR ERV1 1 448 -2 1772 308 159 42 chr1 93570053 93571350 -188622314 - L2 LINE L2 -337 2977 1530 516 232 104 69 chr1 93572215 93572630 -188621034 - MLT1H LTR MaLR 0 542 129 1780 169 3 13 chr1 93572727 93573034 -188620630 - AluJb SINE Alu -8 304 1 458 319 66 86 chr1 93573127 93573428 -188620236 + L2 LINE L2 2972 3266 -6 27 0 0 0 chr1 93574839 93574866 -188618798 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr1 93576283 93576307 -188617357 + AT_rich Low_complexity Low_complexity 1 24 0 350 264 0 38 chr1 93577225 93577331 -188616333 + Charlie7 DNA MER1_type 7 108 -2504 232 216 81 68 chr1 93577824 93577898 -188615766 + MER103 DNA DNA 45 119 -47 610 354 76 29 chr1 93578136 93578704 -188614960 - L2 LINE L2 -8 3264 2653 302 373 45 0 chr1 93578740 93578850 -188614814 + L2 LINE L2 3158 3272 0 262 296 14 0 chr1 93578862 93578933 -188614731 - L2 LINE L2 -679 2635 2564 21 0 0 0 chr1 93579252 93579273 -188614391 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 93579339 93579361 -188614303 + AT_rich Low_complexity Low_complexity 1 22 0 1217 217 76 63 chr1 93579389 93579771 -188613893 + MLT1B LTR MaLR 1 387 -3 1233 225 77 15 chr1 93580257 93580581 -188613083 - MER2 DNA MER2_type 0 344 1 25 0 0 0 chr1 93580659 93580684 -188612980 + AT_rich Low_complexity Low_complexity 1 25 0 3822 105 84 82 chr1 93581511 93582294 -188611370 + LTR1 LTR ERV1 1 785 0 9250 99 5 17 chr1 93582444 93583738 -188609926 - HSMAR1 DNA Mariner 0 1287 9 2506 84 0 0 chr1 93583786 93584094 -188609570 - AluSp SINE Alu -5 308 1 1788 163 3 16 chr1 93584244 93584551 -188609113 - AluJb SINE Alu -9 303 1 492 33 66 0 chr1 93584830 93584921 -188608743 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 367 228 50 10 chr1 93585737 93585838 -188607826 + MER103 DNA DNA 5 109 -57 659 123 0 9 chr1 93586067 93586181 -188607483 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 2480 150 39 31 chr1 93586188 93586722 -188606942 - MER41B LTR ERV1 -56 579 5 371 39 39 0 chr1 93586731 93586783 -188606881 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 241 354 35 42 chr1 93589226 93589370 -188604294 - MIR3 SINE MIR -1 207 65 248 256 120 60 chr1 93591861 93591978 -188601686 - MIR SINE MIR -46 216 93 285 316 110 67 chr1 93593135 93593344 -188600320 - MIR SINE MIR -29 233 16 183 343 29 14 chr1 93595009 93595079 -188598585 + L2 LINE L2 2573 2643 -671 301 288 50 50 chr1 93595623 93595762 -188597902 + MER91C DNA MER1_type 2 140 0 241 270 230 0 chr1 93595762 93595862 -188597802 + MIR SINE MIR 67 189 -73 187 284 104 37 chr1 93595901 93596035 -188597629 + L2 LINE L2 3171 3313 0 234 167 0 0 chr1 93596049 93596091 -188597573 + L2 LINE L2 3218 3259 -13 2057 85 3 34 chr1 93596504 93596862 -188596802 - AluY SINE Alu 0 349 1 418 242 183 46 chr1 93597773 93597926 -188595738 + MIR SINE MIR 62 235 -27 22 35 0 0 chr1 93597982 93598011 -188595653 + AT_rich Low_complexity Low_complexity 1 29 0 235 239 62 53 chr1 93599909 93600022 -188593642 - MIR SINE MIR -58 204 91 229 339 54 27 chr1 93600561 93600673 -188592991 - MIR SINE MIR -73 135 21 207 314 145 41 chr1 93600851 93601023 -188592641 - MIR SINE MIR -16 246 57 1650 156 173 19 chr1 93601303 93601674 -188591990 + MSTA LTR MaLR 1 428 0 219 261 0 0 chr1 93601699 93601745 -188591919 - L2 LINE L2 -45 3227 3182 2436 189 90 4 chr1 93602161 93602617 -188591047 + MLT2B3 LTR ERVL 1 495 -59 258 32 0 0 chr1 93602672 93602703 -188590961 + (TA)n Simple_repeat Simple_repeat 2 32 0 1307 167 30 63 chr1 93602782 93603051 -188590613 - AluJo SINE Alu -38 274 15 493 153 24 12 chr1 93603053 93603138 -188590526 + MER8 DNA MER2_type 149 234 -5 330 26 0 0 chr1 93603143 93603182 -188590482 + (TG)n Simple_repeat Simple_repeat 2 40 0 321 401 33 0 chr1 93603326 93603478 -188590186 - L2 LINE L2 -219 3053 2897 646 248 45 56 chr1 93605023 93605208 -188588456 + MIR SINE MIR 3 192 -70 1914 171 77 34 chr1 93605208 93605622 -188588042 + Tigger2a DNA MER2_type 2 433 -1 646 248 45 56 chr1 93605622 93605667 -188587997 + MIR SINE MIR 192 236 -26 670 286 103 52 chr1 93605874 93606389 -188587275 + MLT1H LTR MaLR 48 595 0 225 366 42 21 chr1 93606478 93606620 -188587044 + L2 LINE L2 2599 2743 -571 283 306 78 92 chr1 93606850 93607131 -188586533 + L2 LINE L2 2992 3268 -4 940 253 29 22 chr1 93607416 93607693 -188585971 - MLT1D LTR MaLR -116 389 111 2055 196 44 53 chr1 93607715 93608220 -188585444 - MLT1D LTR MaLR -3 502 3 342 0 0 0 chr1 93608462 93608500 -188585164 + (CA)n Simple_repeat Simple_repeat 1 38 0 28 48 0 0 chr1 93608703 93608745 -188584919 + AT_rich Low_complexity Low_complexity 1 42 0 243 292 49 32 chr1 93608794 93608979 -188584685 + L1M3 LINE L1 5386 5573 -610 236 257 21 79 chr1 93609094 93609234 -188584430 + L1ME LINE L1 5689 5820 -301 601 308 73 17 chr1 93609347 93609581 -188584083 - MIR SINE MIR -10 252 6 * 756 317 57 38 chr1 93609579 93609951 -188583713 - L2 LINE L2 0 3313 2935 2517 34 34 3 chr1 93610174 93610472 -188583192 + AluY SINE Alu 1 307 -4 23 0 0 0 chr1 93611366 93611389 -188582275 + AT_rich Low_complexity Low_complexity 1 23 0 234 246 33 0 chr1 93612859 93612920 -188580744 - MLT1K LTR MaLR -7 581 519 247 251 177 79 chr1 93613429 93613632 -188580032 - MIR SINE MIR -20 242 20 259 156 47 0 chr1 93613780 93613844 -188579820 + GA-rich Low_complexity Low_complexity 6 72 0 23 0 0 0 chr1 93614126 93614149 -188579515 + AT_rich Low_complexity Low_complexity 1 23 0 1371 215 7 36 chr1 93614371 93614678 -188578986 + AluJo SINE Alu 1 298 -14 675 210 0 16 chr1 93616081 93616205 -188577459 + FLAM_A SINE Alu 1 122 -11 334 284 62 68 chr1 93616213 93616389 -188577275 + MIR SINE MIR 4 178 -84 533 277 20 0 chr1 93616620 93616768 -188576896 + LTR16B LTR ERVL 1 151 -313 548 173 90 3 chr1 93616778 93616979 -188576685 + MLT2D LTR ERVL 1 291 -123 273 142 0 24 chr1 93617081 93617141 -188576523 + MLT2D LTR ERVL 370 412 -2 589 286 17 11 chr1 93617151 93617326 -188576338 + LTR16B LTR ERVL 167 342 -122 2480 62 0 0 chr1 93617438 93617744 -188575920 - AluY SINE Alu -5 306 1 209 190 103 17 chr1 93618711 93618769 -188574895 + MIR SINE MIR 105 167 -95 785 183 32 16 chr1 93619024 93619210 -188574454 - MER53 DNA DNA 0 189 1 2366 74 0 0 chr1 93619415 93619726 -188573938 + AluY SINE Alu 1 311 0 226 224 20 0 chr1 93620166 93620215 -188573449 - HSMAR1 DNA Mariner -491 796 747 431 313 75 0 chr1 93620344 93620504 -188573160 + L1ME3A LINE L1 5477 5648 -514 310 220 35 165 chr1 93620544 93620671 -188572993 + MER112 DNA MER1_type 81 174 -86 378 0 0 0 chr1 93620671 93620713 -188572951 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 310 220 35 165 chr1 93620713 93620785 -188572879 + MER112 DNA MER1_type 174 254 -6 286 321 69 24 chr1 93620810 93621056 -188572608 + L1ME3A LINE L1 5689 5945 -225 21 36 0 0 chr1 93621427 93621455 -188572209 + AT_rich Low_complexity Low_complexity 1 28 0 406 336 57 78 chr1 93621590 93621923 -188571741 + L2 LINE L2 2945 3270 -2 217 301 15 98 chr1 93622518 93622651 -188571013 - L2 LINE L2 -15 3257 3136 378 335 121 19 chr1 93624085 93624291 -188569373 + L3b LINE CR1 1354 1580 -3 411 250 86 21 chr1 93624947 93625087 -188568577 - MER45C DNA AcHobo -44 909 761 356 261 117 0 chr1 93625099 93625210 -188568454 - MER45C DNA AcHobo -348 605 482 957 246 100 49 chr1 93625274 93625603 -188568061 - MER45C DNA AcHobo -607 346 1 1187 60 12 0 chr1 93625985 93626153 -188567511 + (AATAG)n Simple_repeat Simple_repeat 2 171 0 343 292 110 38 chr1 93626330 93626679 -188566985 - L1ME LINE L1 -504 5658 5284 417 288 69 56 chr1 93626926 93627530 -188566134 - L1MEd LINE L1 -971 1519 818 233 241 0 0 chr1 93627619 93627673 -188565991 - MER69 DNA AcHobo -1 2525 2472 210 167 0 0 chr1 93630220 93630256 -188563408 + T-rich Low_complexity Low_complexity 1 36 0 185 200 36 0 chr1 93630557 93630612 -188563052 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1096 144 31 15 chr1 93630684 93630879 -188562785 + Tigger1 DNA MER2_type 1964 2161 -257 200 209 0 15 chr1 93631019 93631041 -188562623 + (TA)n Simple_repeat Simple_repeat 1 22 -44 13297 140 57 10 chr1 93631041 93633351 -188560313 - Tigger1 DNA MER2_type 0 2418 1 200 209 0 15 chr1 93633351 93633395 -188560269 + (TA)n Simple_repeat Simple_repeat 22 66 0 23 0 0 0 chr1 93633888 93633911 -188559753 + AT_rich Low_complexity Low_complexity 1 23 0 1350 154 7 92 chr1 93633929 93634201 -188559463 - AluSx SINE Alu -21 291 43 181 315 154 43 chr1 93634353 93634515 -188559149 - L2 LINE L2 -117 3155 2976 199 317 37 37 chr1 93634721 93634803 -188558861 - MIR SINE MIR -176 86 5 255 294 176 18 chr1 93635702 93635872 -188557792 - MIR SINE MIR -10 252 56 2198 92 0 0 chr1 93636942 93637225 -188556439 + AluY SINE Alu 21 303 -8 346 324 58 0 chr1 93638645 93638784 -188554880 - MER117 DNA MER1_type -49 148 2 301 342 88 0 chr1 93639058 93639172 -188554492 + L2 LINE L2 3139 3262 -10 745 253 31 31 chr1 93639749 93639978 -188553686 + MIR SINE MIR 34 262 0 1106 117 10 51 chr1 93690167 93690363 -188503301 + THE1B LTR MaLR 177 364 0 11761 91 11 2 chr1 93690363 93691929 -188501735 + THE1B-int LTR MaLR 1 1580 0 2159 109 53 34 chr1 93691929 93692286 -188501378 + THE1B LTR MaLR 1 364 0 180 118 147 0 chr1 93692291 93692325 -188501339 - L2 LINE L2 -15 3257 3219 * 464 271 126 25 chr1 93692296 93692495 -188501169 - MIR SINE MIR -15 247 29 940 247 38 68 chr1 93692816 93693184 -188500480 - MLT1A2 LTR MaLR 0 374 18 365 350 57 33 chr1 93693208 93693539 -188500125 + HAL1 LINE L1 1115 1453 -1054 1938 129 0 0 chr1 93693768 93694031 -188499633 - AluSx SINE Alu -49 263 1 1441 129 44 0 chr1 93694225 93694450 -188499214 - LTR12 LTR ERV1 0 714 480 308 245 10 0 chr1 93694451 93694549 -188499115 - LTR30 LTR ERV1 -80 642 544 1435 129 32 97 chr1 93694550 93694860 -188498804 - pTR5 LTR ERV1 -414 2024 1735 243 237 50 59 chr1 93694883 93695028 -188498636 + MLT1J2 LTR MaLR 247 446 -4 337 250 11 0 chr1 93695168 93695256 -188498408 + MLT1J2 LTR MaLR 17 105 -345 286 214 179 45 chr1 93695366 93695478 -188498186 + MLT1J1 LTR MaLR 285 411 -35 357 284 80 53 chr1 93695526 93695887 -188497777 + L1 LINE L1 2716 3093 -3053 8078 79 2 1 chr1 93695887 93697779 -188495885 + L1PA7 LINE L1 4255 6154 0 357 284 80 53 chr1 93697779 93697854 -188495810 + L1 LINE L1 3093 3164 -2982 568 239 0 42 chr1 93697916 93698058 -188495606 - MIR SINE MIR -21 241 106 300 296 105 19 chr1 93698060 93698222 -188495442 + L1 LINE L1 3176 3351 -2795 1966 100 3 52 chr1 93698241 93698531 -188495133 - AluSp SINE Alu -37 276 1 613 216 17 0 chr1 93698666 93698782 -188494882 + FLAM_C SINE Alu 1 118 -15 41 36 0 0 chr1 93698782 93698837 -188494827 + AT_rich Low_complexity Low_complexity 1 55 0 431 186 194 8 chr1 93699282 93699406 -188494258 + MLT1E LTR MaLR 2 148 -445 271 265 306 10 chr1 93699421 93699617 -188494047 + MLT1E LTR MaLR 119 372 -221 208 381 76 38 chr1 93699661 93699871 -188493793 + MIR SINE MIR 28 245 -17 183 229 0 0 chr1 93700056 93700117 -188493547 + (TA)n Simple_repeat Simple_repeat 1 61 0 231 330 0 43 chr1 93700766 93700881 -188492783 - MIR SINE MIR -90 172 63 410 303 66 13 chr1 93700985 93701137 -188492527 + MIR SINE MIR 47 206 -56 24 0 0 0 chr1 93701944 93701968 -188491696 + AT_rich Low_complexity Low_complexity 1 24 0 1728 168 3 11 chr1 93703448 93703759 -188489905 - AluJo SINE Alu 0 309 1 211 239 60 15 chr1 93703767 93703834 -188489830 + MIR SINE MIR 124 193 -69 2183 136 24 21 chr1 93704079 93704453 -188489211 - THE1C LTR MaLR 0 375 1 1812 150 55 30 chr1 93704928 93705294 -188488370 - THE1C LTR MaLR 0 375 1 777 240 73 0 chr1 93705386 93705565 -188488099 - MIR SINE MIR -65 197 6 618 314 22 22 chr1 93705628 93705857 -188487807 - MIR SINE MIR -29 233 5 3392 60 2 0 chr1 93708451 93708884 -188484780 + L1PA6 LINE L1 5721 6154 0 2440 103 20 3 chr1 93708951 93709300 -188484364 - THE1A LTR MaLR 0 355 1 11247 99 10 23 chr1 93709300 93710901 -188482763 - THE1A-int LTR MaLR 0 1580 1 2567 107 0 0 chr1 93710901 93711256 -188482408 - THE1A LTR MaLR 0 355 1 182 337 18 86 chr1 93712371 93712534 -188481130 + MER5B DNA MER1_type 7 158 -20 252 304 43 35 chr1 93712594 93712709 -188480955 + L2 LINE L2 3152 3267 -5 333 314 21 31 chr1 93713070 93713264 -188480400 - L1MEd LINE L1 -5488 631 440 276 91 0 0 chr1 93713383 93713427 -188480237 + (TC)n Simple_repeat Simple_repeat 2 45 0 191 320 0 0 chr1 93713768 93713818 -188479846 + L2 LINE L2 3255 3304 -9 217 311 14 0 chr1 93714711 93714785 -188478879 + CT-rich Low_complexity Low_complexity 2 76 0 526 99 0 12 chr1 93715046 93715127 -188478537 - MADE1 DNA Mariner 0 80 1 462 259 98 17 chr1 93715131 93715305 -188478359 - MIR SINE MIR -3 259 72 2967 107 20 7 chr1 93716317 93716755 -188476909 + MLT2A1 LTR ERVL 1 444 0 26 30 0 0 chr1 93717242 93717275 -188476389 + AT_rich Low_complexity Low_complexity 1 33 0 182 286 0 0 chr1 93717347 93717396 -188476268 + L2 LINE L2 3264 3312 -1 51 70 0 0 chr1 93718506 93718606 -188475058 + AT_rich Low_complexity Low_complexity 1 100 0 458 244 99 54 chr1 93721691 93721933 -188471731 - L2 LINE L2 -871 2443 2191 682 157 0 0 chr1 93722138 93722240 -188471424 + FRAM SINE Alu 21 122 -54 189 234 0 0 chr1 93722825 93722889 -188470775 + CT-rich Low_complexity Low_complexity 4 67 0 231 284 74 53 chr1 93723994 93724089 -188469575 - L2 LINE L2 -30 3242 3146 306 340 158 5 chr1 93724977 93725186 -188468478 + MIR SINE MIR 12 252 -10 328 351 57 23 chr1 93725465 93725764 -188467900 + LTR16C LTR ERVL 89 397 -94 745 163 7 27 chr1 93725777 93725924 -188467740 + LTR41 LTR ERVL 1 144 -629 209 108 0 27 chr1 93725924 93725961 -188467703 + (GA)n Simple_repeat Simple_repeat 1 36 0 362 195 6 170 chr1 93726251 93726308 -188467356 + LTR41 LTR ERVL 525 590 -183 405 0 0 0 chr1 93726308 93726353 -188467311 + (TG)n Simple_repeat Simple_repeat 1 45 0 362 195 6 170 chr1 93726353 93726454 -188467210 + LTR41 LTR ERVL 590 657 -116 1540 146 146 3 chr1 93726719 93727021 -188466643 + MSTA LTR MaLR 1 345 -83 869 138 6 28 chr1 93727021 93727202 -188466462 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 1885 181 0 10 chr1 93727249 93727563 -188466101 - AluJb SINE Alu -1 311 1 484 97 0 0 chr1 93727563 93727635 -188466029 + MSTA LTR MaLR 357 428 0 482 164 0 0 chr1 93727692 93727765 -188465899 + LTR16C LTR ERVL 418 490 -1 1008 226 0 0 chr1 93727982 93728168 -188465496 + MER5A DNA MER1_type 1 186 -3 1513 220 25 25 chr1 93728535 93728894 -188464770 + MLT1A1 LTR MaLR 1 359 -6 421 332 41 57 chr1 93729387 93729728 -188463936 + HERVL LTR ERVL 3940 4349 -1415 212 231 0 31 chr1 93730049 93730114 -188463550 + (CATA)n Simple_repeat Simple_repeat 4 66 0 515 315 64 28 chr1 93730273 93730524 -188463140 - MIR SINE MIR 0 262 3 1150 249 54 65 chr1 93732008 93732469 -188461195 + L1MCb LINE L1 1 456 -5589 204 186 0 34 chr1 93732540 93732599 -188461065 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 983 217 26 9 chr1 93733650 93733880 -188459784 - MER58 DNA MER1_type -106 235 2 231 88 0 0 chr1 93733907 93733941 -188459723 + (TG)n Simple_repeat Simple_repeat 1 34 0 491 270 99 23 chr1 93735102 93735277 -188458387 + MLT1I LTR MaLR 251 407 -2 234 335 85 28 chr1 93736007 93736183 -188457481 - MIR SINE MIR -1 261 76 497 237 26 0 chr1 93737032 93737146 -188456518 + MIR SINE MIR 57 173 -89 1287 211 42 66 chr1 93738095 93738475 -188455189 + MLT1A2 LTR MaLR 4 374 0 189 74 0 0 chr1 93739156 93739183 -188454481 + (GGAAA)n Simple_repeat Simple_repeat 4 30 0 1390 146 68 118 chr1 93739504 93739887 -188453777 - MLT1A1 LTR MaLR -1 364 1 924 342 94 31 chr1 93740047 93741058 -188452606 - L2 LINE L2 -2 3311 2232 22 0 0 0 chr1 93742628 93742650 -188451014 + AT_rich Low_complexity Low_complexity 1 22 0 248 168 59 40 chr1 93742651 93742752 -188450912 + (TTTAA)n Simple_repeat Simple_repeat 1 103 0 371 47 86 55 chr1 93742756 93742884 -188450780 + (TTAAA)n Simple_repeat Simple_repeat 1 132 0 639 205 130 0 chr1 93743494 93743656 -188450008 - MER5A DNA MER1_type 0 189 4 264 237 50 101 chr1 93744206 93744345 -188449319 + MER5B DNA MER1_type 26 157 -21 704 257 11 6 chr1 93744575 93744750 -188448914 + MER5B DNA MER1_type 2 177 -1 236 174 22 0 chr1 93745299 93745345 -188448319 - L1ME1 LINE L1 -12 6154 6108 842 129 65 7 chr1 93745347 93745486 -188448178 + LTR40a LTR ERVL 4 150 -369 511 103 0 0 chr1 93745541 93745656 -188448008 - AluSg/x SINE Alu 0 326 212 6315 265 70 60 chr1 93745657 93747936 -188445728 + HERVL40 LTR ERVL 2280 4584 -946 1276 189 137 55 chr1 93747936 93748302 -188445362 + MSTD LTR MaLR 1 396 0 6315 265 70 60 chr1 93748302 93748370 -188445294 + HERVL40 LTR ERVL 4584 4650 -880 2559 94 33 46 chr1 93748478 93748533 -188445131 - MLT2A2 LTR ERVL 0 453 399 194 0 39 0 chr1 93748533 93748559 -188445105 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2559 94 33 46 chr1 93748559 93748896 -188444768 - MLT2A2 LTR ERVL -54 399 66 856 182 22 6 chr1 93749024 93749205 -188444459 + MER53 DNA DNA 4 187 -2 792 163 139 0 chr1 93749669 93749835 -188443829 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr1 93751019 93751040 -188442624 + AT_rich Low_complexity Low_complexity 1 21 0 256 296 51 10 chr1 93751040 93751138 -188442526 - MIR SINE MIR -4 258 157 754 292 50 37 chr1 93752993 93753397 -188440267 + MLT1I LTR MaLR 1 409 0 842 114 38 0 chr1 93754500 93754632 -188439032 - L1PA16 LINE L1 -3 6163 6027 2506 107 11 0 chr1 93754678 93755043 -188438621 - L1PA16 LINE L1 -252 5914 5546 228 267 181 9 chr1 93755227 93755343 -188438321 - MIR SINE MIR -6 256 121 481 277 32 43 chr1 93756039 93756227 -188437437 + MIR SINE MIR 2 187 -75 206 31 0 31 chr1 93758468 93758500 -188435164 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 180 274 16 16 chr1 93758835 93758897 -188434767 - MIR SINE MIR -114 148 87 264 100 0 0 chr1 93759033 93759073 -188434591 + (A)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr1 93759154 93759178 -188434486 + AT_rich Low_complexity Low_complexity 1 24 0 226 254 72 94 chr1 93759281 93759419 -188434245 - MIR SINE MIR -41 221 87 279 173 0 0 chr1 93760304 93760356 -188433308 + (CA)n Simple_repeat Simple_repeat 1 52 0 322 329 167 9 chr1 93760484 93760712 -188432952 - L2 LINE L2 0 3272 3009 300 233 0 14 chr1 93762848 93762921 -188430743 + L1MC4 LINE L1 6641 6712 -1330 243 168 11 63 chr1 93762925 93763020 -188430644 + L1MC4 LINE L1 6614 6703 -1339 239 278 0 0 chr1 93762974 93763064 -188430600 - L1MC4 LINE L1 -1339 6703 6614 * 893 287 141 18 chr1 93763337 93763720 -188429944 + LTR16A LTR ERVL 21 450 0 21 0 0 0 chr1 93764958 93764979 -188428685 + AT_rich Low_complexity Low_complexity 1 21 0 2229 91 3 14 chr1 93765746 93766042 -188427622 + AluSp SINE Alu 8 300 -13 27 0 0 0 chr1 93766449 93766476 -188427188 + AT_rich Low_complexity Low_complexity 1 27 0 217 246 53 0 chr1 93766976 93767033 -188426631 - MIR SINE MIR -71 191 132 469 310 58 7 chr1 93767037 93767192 -188426472 - MIR SINE MIR -98 164 2 330 182 55 45 chr1 93767403 93767513 -188426151 - L1ME4a LINE L1 -224 5897 5787 529 316 106 44 chr1 93767588 93767974 -188425690 + MLT1K LTR MaLR 126 535 -53 2469 294 66 35 chr1 93767974 93768122 -188425542 - L2 LINE L2 -366 2948 2806 594 0 0 0 chr1 93768122 93768188 -188425476 + (TA)n Simple_repeat Simple_repeat 2 67 0 2469 294 66 35 chr1 93768188 93768956 -188424708 - L2 LINE L2 -508 2806 1998 1524 223 27 27 chr1 93768956 93769329 -188424335 + MLT1A2 LTR MaLR 2 374 0 2469 294 66 35 chr1 93769329 93769365 -188424299 - L2 LINE L2 -1316 1998 1965 310 232 207 0 chr1 93769426 93769508 -188424156 + MER45C DNA AcHobo 4 102 -851 1708 178 40 8 chr1 93769526 93769880 -188423784 - L1MB1 LINE L1 -1 6167 5803 227 33 0 0 chr1 93769884 93769914 -188423750 + L1P4 LINE L1 5401 5430 -735 742 289 154 15 chr1 93769915 93770188 -188423476 + MER45C DNA AcHobo 94 404 -549 430 249 176 42 chr1 93770193 93770358 -188423306 + MER45C DNA AcHobo 723 909 -44 259 229 0 0 chr1 93771095 93771143 -188422521 + L2 LINE L2 3221 3268 -4 286 336 144 49 chr1 93771294 93771684 -188421980 + L2 LINE L2 2844 3270 -2 325 278 81 35 chr1 93771989 93772162 -188421502 + MLT1K LTR MaLR 398 578 -10 288 0 0 0 chr1 93772507 93772539 -188421125 + (TG)n Simple_repeat Simple_repeat 1 32 0 255 91 73 18 chr1 93774635 93774668 -188418996 - MLT2C1 LTR ERVL 0 520 481 452 85 24 0 chr1 93774668 93774750 -188418914 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 255 91 73 18 chr1 93774750 93774771 -188418893 - MLT2C1 LTR ERVL -39 481 463 1435 167 20 0 chr1 93774862 93775106 -188418558 - MLT2C1 LTR ERVL -61 336 88 3749 215 16 7 chr1 93775106 93775832 -188417832 + MER44D DNA MER2_type 1 605 0 601 124 0 0 chr1 93775832 93775921 -188417743 - MLT2C1 LTR ERVL -308 89 1 740 148 18 59 chr1 93776191 93776235 -188417429 - MLT1C LTR MaLR -303 164 120 2209 81 0 11 chr1 93776235 93776562 -188417102 - AluY SINE Alu 0 324 1 740 148 18 59 chr1 93776562 93776685 -188416979 - MLT1C LTR MaLR -347 120 3 234 128 0 0 chr1 93776918 93776957 -188416707 + (TG)n Simple_repeat Simple_repeat 1 39 0 2269 39 70 11 chr1 93777255 93777540 -188416124 - AluY SINE Alu -9 302 1 661 303 57 15 chr1 93778018 93778282 -188415382 - MLT1J LTR MaLR -186 325 51 404 338 132 49 chr1 93778486 93779431 -188414233 - L2 LINE L2 -344 2970 1947 243 0 0 0 chr1 93779504 93779531 -188414133 + (TG)n Simple_repeat Simple_repeat 2 28 0 402 321 45 45 chr1 93780000 93780246 -188413418 - MIR SINE MIR 0 262 17 513 163 0 0 chr1 93781049 93781141 -188412523 + (TG)n Simple_repeat Simple_repeat 1 92 0 26 30 0 0 chr1 93782100 93782133 -188411531 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr1 93782247 93782285 -188411379 + AT_rich Low_complexity Low_complexity 1 38 0 1844 217 60 100 chr1 93782714 93783365 -188410299 - MLT1E2 LTR MaLR -1 625 1 1751 218 5 14 chr1 93783368 93783735 -188409929 - MLT1A1 LTR MaLR 0 365 2 2517 207 23 23 chr1 93783985 93784498 -188409166 - MLT2B2 LTR ERVL -2 513 1 420 287 81 35 chr1 93784675 93784933 -188408731 + L1ME1 LINE L1 184 453 -5970 352 279 18 9 chr1 93785185 93785296 -188408368 + L1ME1 LINE L1 817 928 -5495 1419 263 81 50 chr1 93785313 93786375 -188407289 + L1ME1 LINE L1 1248 2276 -4665 225 0 0 0 chr1 93786375 93786400 -188407264 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 1419 263 81 50 chr1 93786400 93787449 -188406215 + L1ME1 LINE L1 2276 3577 -3364 2889 246 45 23 chr1 93787454 93788896 -188404768 + L1ME1 LINE L1 5343 6828 -133 210 37 0 0 chr1 93788896 93788923 -188404741 + (TG)n Simple_repeat Simple_repeat 2 28 0 2889 246 45 23 chr1 93788923 93789059 -188404605 + L1ME1 LINE L1 6828 6960 -1 313 290 32 41 chr1 93789075 93789296 -188404368 - HAL1b LINE L1 -462 886 668 378 211 32 11 chr1 93791831 93791926 -188401738 + MIR SINE MIR 156 252 -10 21 57 0 0 chr1 93791936 93791971 -188401693 + AT_rich Low_complexity Low_complexity 1 35 0 33 56 0 0 chr1 93792583 93792637 -188401027 + AT_rich Low_complexity Low_complexity 1 54 0 207 171 0 0 chr1 93792773 93792808 -188400856 + (ATTG)n Simple_repeat Simple_repeat 1 35 0 286 345 96 55 chr1 93792972 93793317 -188400347 - L2 LINE L2 -1 3271 2913 1423 244 135 37 chr1 93793466 93794006 -188399658 + MLT1E LTR MaLR 1 593 0 2202 92 30 3 chr1 93794110 93794413 -188399251 + AluY SINE Alu 1 311 0 16118 209 18 13 chr1 93794564 93799179 -188394485 - L1PA15 LINE L1 -2 7601 2772 2241 136 24 8 chr1 93799179 93799548 -188394116 + THE1C LTR MaLR 1 375 0 6455 116 316 4 chr1 93799548 93800743 -188392921 + THE1C-int LTR MaLR 1 1568 -12 2034 172 13 8 chr1 93800748 93801121 -188392543 + THE1C LTR MaLR 1 375 0 5538 298 32 38 chr1 93801121 93803555 -188390109 - L1PA15 LINE L1 -4798 2783 6 288 325 12 0 chr1 93804103 93804186 -188389478 - L2 LINE L2 -1 3312 3229 883 317 110 79 chr1 93804254 93804536 -188389128 - L2 LINE L2 -81 3232 2960 2203 113 7 13 chr1 93804536 93804845 -188388819 + AluSc SINE Alu 1 307 -2 883 317 110 79 chr1 93804845 93805664 -188388000 - L2 LINE L2 -353 2960 2090 1554 214 55 79 chr1 93805676 93806147 -188387517 + MLT1C LTR MaLR 1 460 -7 239 275 0 25 chr1 93806158 93806238 -188387426 - L2 LINE L2 -1317 1997 1920 856 243 51 5 chr1 93806321 93806535 -188387129 + L1MEc LINE L1 36 259 -6137 2170 238 49 86 chr1 93806537 93806836 -188386828 - MER21B LTR ERV1 -79 784 475 1565 190 121 0 chr1 93806836 93807167 -188386497 - MER93b LTR ERV1 0 373 3 2170 238 49 86 chr1 93807167 93807669 -188385995 - MER21B LTR ERV1 -388 475 13 1637 278 68 7 chr1 93807710 93808254 -188385410 + L1MEc LINE L1 286 862 -5534 190 299 129 46 chr1 93808395 93808636 -188385028 - L2 LINE L2 -1458 1856 1596 * 341 337 29 20 chr1 93808632 93808782 -188384882 + MIR3 SINE MIR 15 164 -62 303 315 159 17 chr1 93809786 93810018 -188383646 + MER90 LTR ERV1 246 510 -65 425 273 117 19 chr1 93811564 93811718 -188381946 - MIR SINE MIR -27 235 67 417 39 0 0 chr1 93813408 93813459 -188380205 + (TC)n Simple_repeat Simple_repeat 2 52 0 342 169 0 0 chr1 93813933 93813998 -188379666 + CT-rich Low_complexity Low_complexity 3 67 0 201 262 0 16 chr1 93815176 93815237 -188378427 + T-rich Low_complexity Low_complexity 5 64 0 272 335 40 39 chr1 93815629 93815813 -188377851 + MIR SINE MIR 25 208 -54 22 35 0 0 chr1 93816610 93816639 -188377025 + AT_rich Low_complexity Low_complexity 1 29 0 332 223 223 40 chr1 93816892 93817067 -188376597 + L1MC4 LINE L1 7836 8042 0 404 302 47 24 chr1 93817080 93817249 -188376415 - L2 LINE L2 -18 3295 3123 190 401 35 35 chr1 93817980 93818212 -188375452 + L2 LINE L2 2575 2806 -508 192 325 12 81 chr1 93818475 93818635 -188375029 + L2 LINE L2 3116 3264 -8 499 341 85 20 chr1 93819515 93819761 -188373903 - MIR SINE MIR 0 262 1 288 260 157 34 chr1 93820407 93820611 -188373053 - L1MC4a LINE L1 -1830 5978 5750 319 270 41 57 chr1 93820683 93820840 -188372824 + MLT1J2 LTR MaLR 67 218 -191 194 356 14 0 chr1 93821540 93821613 -188372051 + L2 LINE L2 2632 2705 -609 364 371 101 12 chr1 93821671 93822016 -188371648 + L2 LINE L2 2937 3312 -1 278 381 15 45 chr1 93822242 93822376 -188371288 + MIR SINE MIR 20 149 -59 270 309 44 29 chr1 93823549 93823685 -188369979 + MIR3 SINE MIR 3 140 -68 459 235 17 9 chr1 93824375 93824490 -188369174 - MER103 DNA DNA -48 118 3 25 31 0 0 chr1 93825177 93825209 -188368455 + AT_rich Low_complexity Low_complexity 1 32 0 4776 161 59 15 chr1 93825209 93826137 -188367527 - L1MC1 LINE L1 -1 6332 5364 777 171 0 0 chr1 93826217 93826340 -188367324 - FLAM_A SINE Alu -10 123 1 34401 41 1 3 chr1 93826450 93832662 -188361002 + L1PA4 LINE L1 4 6193 0 518 213 44 15 chr1 93832663 93832799 -188360865 + L1ME LINE L1 5609 5748 -373 186 128 0 0 chr1 93832829 93832868 -188360796 + (A)n Simple_repeat Simple_repeat 1 39 0 771 288 65 64 chr1 93833066 93833786 -188359878 - L2 LINE L2 -66 3247 2544 2535 294 27 13 chr1 93833786 93834609 -188359055 - L2 LINE L2 -1622 1692 859 11900 139 23 10 chr1 93835192 93835867 -188357797 - Tigger1 DNA MER2_type 0 2418 1753 1380 131 0 5 chr1 93835867 93836081 -188357583 - L1PA8 LINE L1 0 6172 5960 11900 139 23 10 chr1 93836081 93837744 -188355920 - Tigger1 DNA MER2_type -665 1753 1 1014 251 5 0 chr1 93837975 93838222 -188355442 - MIR SINE MIR -1 261 16 2012 119 0 34 chr1 93838975 93839300 -188354364 + AluSx SINE Alu 1 315 0 42093 38 23 2 chr1 93841214 93847241 -188346423 + L1PA2 LINE L1 3 6155 0 234 264 155 26 chr1 93848028 93848183 -188345481 - Tigger8 DNA MER2_type -491 175 1 707 366 81 14 chr1 93849801 93850317 -188343347 - L2 LINE L2 -445 2869 2319 256 338 77 35 chr1 93850341 93850628 -188343036 - L2 LINE L2 -2273 1041 743 455 288 8 0 chr1 93851193 93851311 -188342353 + MIR SINE MIR 46 164 -98 366 290 57 0 chr1 93851567 93851691 -188341973 + MLT1I LTR MaLR 10 140 -269 398 316 73 70 chr1 93852939 93853252 -188340412 + L2 LINE L2 2664 2977 -337 678 312 119 22 chr1 93854301 93854570 -188339094 + L2 LINE L2 2859 3183 -130 369 0 0 0 chr1 93854570 93854611 -188339053 + (TG)n Simple_repeat Simple_repeat 2 42 0 678 312 119 22 chr1 93854611 93854751 -188338913 + L2 LINE L2 3183 3308 -5 228 35 0 0 chr1 93855151 93855180 -188338484 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr1 93855649 93855684 -188337980 + AT_rich Low_complexity Low_complexity 1 35 0 579 184 123 17 chr1 93855974 93856153 -188337511 - MER5C DNA MER1_type 0 324 127 245 240 27 13 chr1 93856431 93856506 -188337158 - MER5C DNA MER1_type -202 122 47 435 301 132 42 chr1 93856531 93856820 -188336844 - L1MEc LINE L1 -6045 351 37 494 261 53 9 chr1 93856845 93857071 -188336593 - L1M4 LINE L1 -3188 2958 2723 838 256 94 25 chr1 93857194 93857242 -188336422 - L1M4 LINE L1 -3570 2576 2533 2565 45 0 0 chr1 93857242 93857534 -188336130 + AluY SINE Alu 3 294 -17 838 256 94 25 chr1 93857534 93857922 -188335742 - L1M4 LINE L1 -3613 2533 2110 491 294 52 75 chr1 93858287 93858689 -188334975 - L1M4 LINE L1 -2195 3951 3559 2395 199 39 21 chr1 93858691 93859260 -188334404 + L1MA7 LINE L1 5702 6280 -11 1787 199 64 26 chr1 93859653 93860155 -188333509 + LTR27 LTR ERV1 11 501 0 2021 234 45 55 chr1 93860197 93860816 -188332848 - MLT1E3 LTR MaLR -11 613 1 382 302 66 28 chr1 93860938 93861150 -188332514 - L1M4 LINE L1 -3238 2908 2689 23 0 0 0 chr1 93861150 93861173 -188332491 + AT_rich Low_complexity Low_complexity 1 23 0 227 359 62 14 chr1 93861825 93861970 -188331694 + L2 LINE L2 2665 2816 -498 330 330 39 96 chr1 93862064 93862419 -188331245 + L2 LINE L2 2937 3271 -1 919 149 80 11 chr1 93862566 93862741 -188330923 + L1MC2 LINE L1 6132 6318 -26 203 260 26 39 chr1 93862967 93863044 -188330620 - L2 LINE L2 -205 3067 2992 514 352 99 44 chr1 93863107 93863561 -188330103 - L2 LINE L2 -531 2783 2305 796 246 96 0 chr1 93863973 93864253 -188329411 - MER20B DNA MER1_type -1 782 476 418 314 0 8 chr1 93864256 93864374 -188329290 + L2 LINE L2 3196 3312 -1 378 253 0 0 chr1 93864402 93864481 -188329183 - MER20B DNA MER1_type -336 447 369 2806 7 0 0 chr1 93864796 93865100 -188328564 + AluYa5 SINE Alu 1 304 -7 302 282 113 36 chr1 93865290 93865698 -188327966 + LTR16C LTR ERVL 14 482 -9 707 345 67 40 chr1 93865709 93866332 -188327332 + HERV16 LTR ERVL 10 649 -4347 670 296 59 64 chr1 93866549 93866938 -188326726 + HERV16 LTR ERVL 909 1295 -3701 1898 203 45 85 chr1 93867451 93868088 -188325576 - LTR9 LTR ERV1 0 612 1 29 28 0 0 chr1 93868569 93868605 -188325059 + AT_rich Low_complexity Low_complexity 1 36 0 418 318 50 68 chr1 93868720 93868889 -188324775 - L1ME4a LINE L1 -207 5914 5743 2285 174 39 74 chr1 93868889 93869428 -188324236 - MLT2B1 LTR ERVL 0 520 1 418 318 50 68 chr1 93869428 93869586 -188324078 - L1ME4a LINE L1 -378 5743 5592 1659 183 3 14 chr1 93869586 93869881 -188323783 + AluJb SINE Alu 1 292 -20 418 318 50 68 chr1 93869881 93869936 -188323728 - L1ME4a LINE L1 -529 5592 5538 23 33 0 0 chr1 93869966 93869996 -188323668 + AT_rich Low_complexity Low_complexity 1 30 0 236 287 0 20 chr1 93869996 93870097 -188323567 - L1ME4a LINE L1 -910 5393 5295 41 36 0 0 chr1 93870693 93870748 -188322916 + AT_rich Low_complexity Low_complexity 1 55 0 237 227 76 50 chr1 93870784 93870903 -188322761 - L1ME4a LINE L1 -1622 4524 4403 373 332 153 41 chr1 93871225 93871815 -188321849 + L2 LINE L2 2120 2775 -539 1895 106 53 0 chr1 93871943 93872239 -188321425 + AluSc SINE Alu 2 311 0 195 294 120 71 chr1 93875251 93875435 -188318229 - L2 LINE L2 -201 3071 2879 1356 252 34 3 chr1 93877132 93877454 -188316210 - LTR16C LTR ERVL -9 482 151 1173 334 96 18 chr1 93877605 93878321 -188315343 + L2 LINE L2 908 1679 -1635 296 328 34 0 chr1 93878363 93878482 -188315182 + MIR SINE MIR 96 218 -44 23 0 0 0 chr1 93878488 93878511 -188315153 + AT_rich Low_complexity Low_complexity 1 23 0 538 247 61 69 chr1 93878620 93878867 -188314797 + MLT1G1 LTR MaLR 5 249 -346 390 240 126 19 chr1 93878896 93879084 -188314580 + MLT1F LTR MaLR 229 368 -174 1522 190 28 3 chr1 93879351 93879641 -188314023 - MLT1B LTR MaLR -13 377 81 1230 272 19 9 chr1 93879646 93879966 -188313698 - MER93a LTR ERV1 -6 396 74 557 133 12 0 chr1 93880073 93880156 -188313508 - MLT1B LTR MaLR -306 84 1 243 186 0 0 chr1 93880353 93880396 -188313268 + L2 LINE L2 3267 3309 -4 22 0 0 0 chr1 93881153 93881175 -188312489 + AT_rich Low_complexity Low_complexity 1 22 0 955 133 13 0 chr1 93883865 93884038 -188309626 - AluSg/x SINE Alu 0 312 150 288 0 0 0 chr1 93884192 93884224 -188309440 + (TG)n Simple_repeat Simple_repeat 2 33 0 24 32 0 0 chr1 93884633 93884664 -188309000 + AT_rich Low_complexity Low_complexity 1 31 0 2352 84 0 0 chr1 93884985 93885295 -188308369 - AluSg SINE Alu 0 310 1 1335 185 42 0 chr1 93885901 93886161 -188307503 - MER46B DNA MER2_type -59 177 32 335 170 0 0 chr1 93886163 93886216 -188307448 + Tigger4(Zombi) DNA MER2_type 7 59 -2672 13853 143 19 31 chr1 93886430 93886863 -188306801 + Tigger1 DNA MER2_type 1 438 -1980 1140 107 132 10 chr1 93886863 93887068 -188306596 + MER30 DNA MER1_type 1 230 0 13853 143 19 31 chr1 93887068 93889081 -188304583 + Tigger1 DNA MER2_type 438 2417 -1 6894 11 0 0 chr1 93889442 93890269 -188303395 + L1PA3 LINE L1 5350 6176 0 223 273 171 11 chr1 93890706 93890794 -188302870 + L2 LINE L2 3208 3309 -4 219 69 0 0 chr1 93890896 93890925 -188302739 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 577 287 33 37 chr1 93891018 93891262 -188302402 - MLT1I LTR MaLR -67 342 100 743 169 49 22 chr1 93891559 93891742 -188301922 - MER53 DNA DNA 0 189 2 3992 190 38 5 chr1 93892554 93893416 -188300248 - L1 LINE L1 -2060 4086 3196 22 0 0 0 chr1 93893491 93893513 -188300151 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 93893808 93893838 -188299826 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 93894019 93894042 -188299622 + AT_rich Low_complexity Low_complexity 1 23 0 376 309 67 20 chr1 93894350 93894499 -188299165 + MIR3 SINE MIR 1 156 -52 279 164 0 0 chr1 93895506 93895567 -188298097 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 71 0 0 chr1 93895711 93895753 -188297911 + AT_rich Low_complexity Low_complexity 1 42 0 369 244 114 8 chr1 93896267 93896390 -188297274 - L2 LINE L2 -2 3311 3176 1847 235 59 8 chr1 93896434 93896928 -188296736 + LTR40a LTR ERVL 1 519 0 817 268 39 26 chr1 93897112 93897343 -188296321 - MIR SINE MIR -13 249 16 2446 130 66 7 chr1 93897441 93897849 -188295815 + MSTB1 LTR MaLR 1 432 0 301 159 8 87 chr1 93898783 93898909 -188294755 + (TTTAA)n Simple_repeat Simple_repeat 1 116 0 30 0 0 0 chr1 93899092 93899122 -188294542 + AT_rich Low_complexity Low_complexity 1 30 0 1663 185 0 4 chr1 93899122 93899403 -188294261 + AluJb SINE Alu 1 280 -32 230 56 28 0 chr1 93899404 93899440 -188294224 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr1 93899947 93899975 -188293689 + AT_rich Low_complexity Low_complexity 1 28 0 432 314 59 52 chr1 93900081 93900371 -188293293 + L1M4 LINE L1 3602 3893 -2253 216 0 0 0 chr1 93900829 93900853 -188292811 + (TA)n Simple_repeat Simple_repeat 2 25 0 2047 129 3 0 chr1 93900853 93901148 -188292516 - AluSg SINE Alu -14 296 1 210 231 0 0 chr1 93901184 93901223 -188292441 + polypurine Low_complexity Low_complexity 2 40 0 2750 13 10 0 chr1 93901594 93901907 -188291757 + AluYb8 SINE Alu 1 316 -2 24 85 0 0 chr1 93902078 93902137 -188291527 + AT_rich Low_complexity Low_complexity 1 59 0 2339 41 14 3 chr1 93905080 93905370 -188288294 - AluY SINE Alu -18 293 1 22 35 0 0 chr1 93905613 93905642 -188288022 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 93905690 93905740 -188287924 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 93906533 93906555 -188287109 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 93907075 93907098 -188286566 + AT_rich Low_complexity Low_complexity 1 23 0 180 298 24 48 chr1 93907638 93907722 -188285942 - MIR SINE MIR -79 183 102 183 330 34 23 chr1 93907866 93907954 -188285710 - MIR3 SINE MIR -38 170 82 3088 245 101 35 chr1 93908011 93909428 -188284236 - L1ME1 LINE L1 -14 6221 4613 1557 201 7 7 chr1 93909428 93909736 -188283928 - AluJo SINE Alu 0 312 5 3088 245 101 35 chr1 93909736 93910390 -188283274 - L1ME1 LINE L1 -1622 4613 4003 4380 78 36 9 chr1 93910390 93911489 -188282175 - MER11A LTR ERVK 0 1266 1 2508 253 139 52 chr1 93911498 93913433 -188280231 - L1ME1 LINE L1 -2215 4000 1924 353 322 33 65 chr1 93913434 93913648 -188280016 - L1ME1 LINE L1 -6151 245 39 893 57 89 0 chr1 93914477 93914600 -188279064 - MER85 DNA T2_type -4 135 2 339 44 0 0 chr1 93914647 93914692 -188278972 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 415 328 56 8 chr1 93914769 93914894 -188278770 + L2 LINE L2 3137 3267 -5 314 321 57 53 chr1 93915612 93915877 -188277787 - MLT1L LTR MaLR -34 581 316 446 191 11 0 chr1 93916273 93916367 -188277297 + MER53 DNA DNA 1 95 -94 2110 128 0 0 chr1 93916870 93917160 -188276504 + AluSg SINE Alu 1 290 -20 26 30 0 0 chr1 93917453 93917486 -188276178 + AT_rich Low_complexity Low_complexity 1 33 0 340 274 32 0 chr1 93919202 93919326 -188274338 + MLT1L LTR MaLR 163 290 -325 2404 111 8 19 chr1 93919471 93919850 -188273814 - THE1C LTR MaLR 0 375 1 261 0 0 0 chr1 93920319 93920348 -188273316 + (CA)n Simple_repeat Simple_repeat 1 29 0 420 158 0 0 chr1 93920639 93920715 -188272949 + (TA)n Simple_repeat Simple_repeat 2 77 0 1058 179 56 0 chr1 93921627 93921822 -188271842 + AluSg/x SINE Alu 86 291 -21 188 204 19 74 chr1 93921884 93921938 -188271726 + MIR SINE MIR 103 153 -55 628 318 136 14 chr1 93922166 93922594 -188271070 + MLT1K LTR MaLR 81 560 -28 42318 35 22 1 chr1 93922645 93928669 -188264995 + L1PA3 LINE L1 4 6155 0 33 25 0 0 chr1 93928673 93928713 -188264951 + AT_rich Low_complexity Low_complexity 1 40 0 278 286 0 0 chr1 93931830 93931886 -188261778 - L2 LINE L2 -12 3260 3205 247 296 34 97 chr1 93934703 93934909 -188258755 - L1ME LINE L1 -574 5547 5355 293 307 44 0 chr1 93935579 93935693 -188257971 - MIR SINE MIR -44 218 100 237 119 0 0 chr1 93935758 93935800 -188257864 + (TG)n Simple_repeat Simple_repeat 2 43 0 2157 122 0 0 chr1 93936135 93936430 -188257234 - AluSx SINE Alu -17 295 1 32 26 0 0 chr1 93936432 93936471 -188257193 + AT_rich Low_complexity Low_complexity 1 39 0 243 273 42 31 chr1 93936584 93936694 -188256970 - MIR SINE MIR -73 135 40 216 356 68 17 chr1 93936759 93936877 -188256787 - L2 LINE L2 0 3313 3190 255 79 0 0 chr1 93937280 93937318 -188256346 + (TG)n Simple_repeat Simple_repeat 2 39 0 368 327 30 33 chr1 93937365 93937567 -188256097 - MIR SINE MIR -55 207 8 447 278 67 75 chr1 93938185 93938545 -188255119 + L1MEc LINE L1 2167 2523 -3873 2821 178 48 35 chr1 93938631 93939440 -188254224 - MER21A LTR ERV1 0 931 1 30 27 0 0 chr1 93939548 93939585 -188254079 + AT_rich Low_complexity Low_complexity 1 37 0 217 311 14 0 chr1 93939927 93940001 -188253663 - MIR SINE MIR -76 186 112 376 342 156 0 chr1 93940021 93940220 -188253444 + MIR SINE MIR 20 249 -13 326 248 105 0 chr1 93940372 93940477 -188253187 + L1M4 LINE L1 4500 4615 -1531 2168 92 23 7 chr1 93940529 93940832 -188252832 + AluSc SINE Alu 1 308 -1 25 0 0 0 chr1 93941071 93941096 -188252568 + AT_rich Low_complexity Low_complexity 1 25 0 212 0 36 0 chr1 93941474 93941502 -188252162 + (TA)n Simple_repeat Simple_repeat 2 30 0 6620 61 32 0 chr1 93941509 93942409 -188251255 - L1PA8A LINE L1 -16 6115 5209 252 273 20 15 chr1 93942649 93942761 -188250903 - MLT1L LTR MaLR -2 613 470 225 247 24 12 chr1 93943004 93943089 -188250575 + (TA)n Simple_repeat Simple_repeat 2 87 0 13708 127 44 35 chr1 93943231 93945626 -188248038 + Tigger1 DNA MER2_type 1 2418 0 673 307 62 20 chr1 93945628 93946172 -188247492 - L1M4 LINE L1 -4832 1710 1263 1487 178 92 13 chr1 93947190 93947493 -188246171 - MER44D DNA MER2_type -9 600 4 331 332 8 84 chr1 93948152 93948390 -188245274 + MIR SINE MIR 37 256 -6 196 226 113 0 chr1 93949164 93949226 -188244438 - MIR SINE MIR -10 252 184 2096 157 77 34 chr1 93949530 93949944 -188243720 + MSTB1 LTR MaLR 1 432 0 1800 218 37 43 chr1 93950158 93950621 -188243043 + MLT2B1 LTR ERVL 16 475 -45 219 170 21 53 chr1 93950622 93950716 -188242948 + (TTATA)n Simple_repeat Simple_repeat 1 91 0 279 0 0 0 chr1 93950722 93950753 -188242911 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 294 103 0 0 chr1 93950753 93950792 -188242872 + MLT2C2 LTR ERVL 419 457 -7 462 238 58 23 chr1 93950809 93950981 -188242683 + L1ME LINE L1 145 322 -5883 339 164 0 0 chr1 93951083 93951144 -188242520 + T-rich Low_complexity Low_complexity 1 61 0 391 310 15 107 chr1 93951144 93951415 -188242249 + L1ME LINE L1 434 679 -5526 617 288 124 55 chr1 93951612 93952295 -188241369 + L1ME LINE L1 993 1627 -4769 1732 183 30 0 chr1 93952295 93952629 -188241035 + MER2 DNA MER2_type 1 344 0 617 288 124 55 chr1 93952629 93953154 -188240510 + L1ME LINE L1 1627 2285 -4111 835 234 99 58 chr1 93953376 93953718 -188239946 + HAL1 LINE L1 1239 1594 -913 438 294 109 51 chr1 93953732 93954082 -188239582 + HAL1 LINE L1 1664 2033 -474 792 263 113 60 chr1 93954455 93954969 -188238695 + MLT1F LTR MaLR 1 541 -1 1060 316 155 24 chr1 93955988 93956499 -188237165 - L2 LINE L2 -97 3216 2773 2047 73 0 4 chr1 93956499 93956760 -188236904 + AluY SINE Alu 44 303 -8 1060 316 155 24 chr1 93956760 93957178 -188236486 - L2 LINE L2 -540 2773 2175 15020 199 37 9 chr1 93957218 93959977 -188233687 + L1PB1 LINE L1 6 2685 -4182 2199 57 7 14 chr1 93959977 93960258 -188233406 + AluY SINE Alu 27 305 -6 15020 199 37 9 chr1 93960258 93962284 -188231380 + L1PB1 LINE L1 2685 4652 -2215 269 61 0 41 chr1 93962284 93962333 -188231331 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 15020 199 37 9 chr1 93962333 93964061 -188229603 + L1PB1 LINE L1 4652 6866 -1 28 79 0 0 chr1 93964062 93964125 -188229539 + AT_rich Low_complexity Low_complexity 1 63 0 240 163 0 0 chr1 93964742 93964785 -188228879 + T-rich Low_complexity Low_complexity 1 43 0 219 114 0 0 chr1 93964822 93964857 -188228807 + (ATGGTG)n Simple_repeat Simple_repeat 1 35 0 190 391 124 4 chr1 93964903 93965136 -188228528 - MIR SINE MIR -1 261 1 968 252 70 24 chr1 93965427 93965725 -188227939 + LTR16C LTR ERVL 176 487 -4 13777 150 32 4 chr1 93966220 93968571 -188225093 - Tigger1 DNA MER2_type 0 2418 1 263 248 13 128 chr1 93969542 93969691 -188223973 + MIR SINE MIR 60 191 -71 591 306 126 14 chr1 93969742 93969964 -188223700 - MIR SINE MIR -1 261 15 314 266 62 9 chr1 93969990 93970189 -188223475 + MER5C DNA MER1_type 55 324 0 28 0 0 0 chr1 93971057 93971085 -188222579 + AT_rich Low_complexity Low_complexity 1 28 0 316 281 59 59 chr1 93971215 93971350 -188222314 + MIR SINE MIR 7 141 -121 252 210 16 16 chr1 93971615 93971677 -188221987 + MIR SINE MIR 201 262 0 366 248 40 0 chr1 93971719 93971844 -188221820 - MLT2E LTR ERVL -17 611 482 292 180 0 33 chr1 93971898 93971959 -188221705 + MER53 DNA DNA 4 62 -127 338 207 35 0 chr1 93972116 93972203 -188221461 + MER53 DNA DNA 99 188 -1 1436 267 34 24 chr1 93972206 93972584 -188221080 - MLT2E LTR ERVL -243 385 4 319 255 48 93 chr1 93972981 93973320 -188220344 - L1ME LINE L1 -359 5762 5441 698 266 79 35 chr1 93973855 93974084 -188219580 + MIR SINE MIR 23 261 -1 439 287 144 55 chr1 93974304 93974465 -188219199 - L2 LINE L2 -1103 2211 2066 1727 176 55 32 chr1 93974465 93974845 -188218819 + MLT1B LTR MaLR 2 390 0 439 287 144 55 chr1 93974845 93975045 -188218619 - L2 LINE L2 -1248 2066 1818 203 375 96 19 chr1 93975318 93975422 -188218242 + L2 LINE L2 3141 3252 -20 1161 173 165 34 chr1 93975674 93975940 -188217724 + AluJb SINE Alu 1 301 -1 331 202 45 0 chr1 93976059 93976070 -188217594 - L1MA10 LINE L1 -3 6331 6321 1193 198 169 3 chr1 93976070 93976384 -188217280 - L1ME1 LINE L1 -5 6161 5796 1931 179 75 59 chr1 93976492 93976983 -188216681 - MLT1D LTR MaLR -6 499 1 1459 262 86 7 chr1 93976992 93977415 -188216249 - L1ME1 LINE L1 -440 5724 5336 315 0 0 0 chr1 93977415 93977450 -188216214 + (TG)n Simple_repeat Simple_repeat 2 36 0 1459 262 86 7 chr1 93977450 93977830 -188215834 - L1ME1 LINE L1 -828 5336 4850 371 248 89 42 chr1 93978198 93978412 -188215252 + L1ME3A LINE L1 4399 4622 -1524 32 26 0 0 chr1 93978585 93978624 -188215040 + AT_rich Low_complexity Low_complexity 1 39 0 311 306 31 25 chr1 93979068 93979228 -188214436 + L1ME3A LINE L1 5266 5426 -2382 645 256 13 55 chr1 93979261 93979499 -188214165 - L2 LINE L2 -60 3253 3026 1310 279 30 45 chr1 93979524 93980054 -188213610 + L1ME3A LINE L1 5649 6170 0 275 171 29 29 chr1 93980056 93980126 -188213538 - HAL1b LINE L1 -961 387 318 183 42 0 0 chr1 93980486 93980510 -188213154 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 961 284 39 30 chr1 93980529 93980860 -188212804 + MLT1I LTR MaLR 76 409 0 180 244 73 0 chr1 93981762 93981803 -188211861 - MIR SINE MIR -3 259 216 307 243 159 0 chr1 93982581 93982688 -188210976 - HAL1 LINE L1 -693 1814 1691 552 254 102 99 chr1 93982743 93983125 -188210539 + MLT1J LTR MaLR 15 397 -114 885 297 42 66 chr1 93983270 93983993 -188209671 - HAL1 LINE L1 -835 1672 968 333 258 221 25 chr1 93984846 93985009 -188208655 - MLT1K LTR MaLR -73 515 321 422 249 124 32 chr1 93985210 93985395 -188208269 + MLT1J LTR MaLR 1 202 -309 347 212 152 66 chr1 93985391 93985542 -188208122 + MLT1J LTR MaLR 325 488 -23 * 2212 114 0 0 chr1 93985563 93985871 -188207793 - AluY SINE Alu -1 310 3 567 343 98 14 chr1 93987665 93988105 -188205559 + L2 LINE L2 1600 2076 -1238 372 339 25 0 chr1 93988533 93988654 -188205010 + L2 LINE L2 3190 3313 0 183 363 84 39 chr1 93988774 93989129 -188204535 + L2 LINE L2 2599 2969 -345 187 315 90 22 chr1 93989320 93989409 -188204255 + L2 LINE L2 3184 3278 -35 26 0 0 0 chr1 93990310 93990336 -188203328 + AT_rich Low_complexity Low_complexity 1 26 0 1611 313 75 50 chr1 93991346 93992614 -188201050 + L2 LINE L2 1788 3139 -174 319 272 95 82 chr1 93993325 93993557 -188200107 + MLT1L LTR MaLR 120 354 -261 672 311 50 8 chr1 93994195 93994436 -188199228 - MIR SINE MIR 0 262 12 21 36 0 0 chr1 93995656 93995684 -188197980 + AT_rich Low_complexity Low_complexity 1 28 0 2121 113 20 7 chr1 93995814 93996115 -188197549 - AluSx SINE Alu -7 305 1 267 299 70 32 chr1 93996453 93996515 -188197149 - MIR SINE MIR -14 248 190 2286 110 58 3 chr1 93996515 93996860 -188196804 + THE1B LTR MaLR 1 364 0 267 299 70 32 chr1 93996860 93996954 -188196710 - MIR SINE MIR -72 190 86 * 294 356 113 0 chr1 93996953 93997130 -188196534 - L2 LINE L2 0 3272 3076 332 351 93 13 chr1 93997622 93997847 -188195817 - L2 LINE L2 -937 2377 2135 210 37 0 0 chr1 93997994 93998021 -188195643 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 280 0 0 0 chr1 93998022 93998056 -188195608 - L1M2 LINE L1 -489 5802 5769 12556 21 0 0 chr1 93998058 94000298 -188193366 - L1PA2 LINE L1 0 6155 3923 5687 36 1 0 chr1 94000298 94000995 -188192669 + L1PA2 LINE L1 3227 3924 -2222 278 159 171 11 chr1 94001601 94001689 -188191975 + MER103 DNA DNA 1 102 -64 326 258 34 11 chr1 94001972 94002061 -188191603 + L2 LINE L2 3215 3305 -8 284 319 28 9 chr1 94002481 94002588 -188191076 - MIR SINE MIR -100 108 35 24 67 0 0 chr1 94003228 94003273 -188190391 + AT_rich Low_complexity Low_complexity 1 45 0 379 262 62 0 chr1 94004883 94005027 -188188637 - MIR SINE MIR -62 146 35 401 369 107 17 chr1 94005115 94005470 -188188194 - L3 LINE CR1 -106 1471 1085 198 264 94 0 chr1 94006287 94006340 -188187324 - L2 LINE L2 0 3313 3256 1504 244 34 6 chr1 94006420 94006740 -188186924 + MER45C DNA AcHobo 3 331 -622 496 307 114 39 chr1 94006782 94007062 -188186602 + MER45C DNA AcHobo 318 618 -335 338 294 31 77 chr1 94007205 94007399 -188186265 - L2 LINE L2 -244 3028 2844 23 0 0 0 chr1 94008347 94008370 -188185294 + AT_rich Low_complexity Low_complexity 1 23 0 215 303 40 20 chr1 94008522 94008621 -188185043 - MIR SINE MIR -115 147 47 1554 109 7 102 chr1 94008856 94008998 -188184666 - L1PA15 LINE L1 -10 7593 7439 204 40 0 0 chr1 94008998 94009023 -188184641 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 2254 93 0 0 chr1 94009024 94009303 -188184361 - AluSc SINE Alu -28 281 3 1554 109 7 102 chr1 94009303 94009451 -188184213 - L1PA15 LINE L1 -163 7440 7329 42395 34 21 5 chr1 94009451 94015502 -188178162 - L1PA2 LINE L1 -4 6151 1 16961 200 19 12 chr1 94015503 94020029 -188173635 - L1PA15 LINE L1 -256 7347 2798 285 309 0 0 chr1 94021268 94021336 -188172328 + MIR3 SINE MIR 110 177 -31 706 265 76 91 chr1 94021699 94022171 -188171493 + MLT1J LTR MaLR 3 467 -44 240 248 114 19 chr1 94023757 94023862 -188169802 + MLT1I LTR MaLR 278 392 -17 268 298 12 24 chr1 94025202 94025286 -188168378 - L2 LINE L2 -8 3305 3223 268 271 0 0 chr1 94025398 94025457 -188168207 + (TG)n Simple_repeat Simple_repeat 2 60 0 931 282 57 80 chr1 94025487 94026087 -188167577 - L1MC4a LINE L1 -1906 5902 5317 1760 201 87 28 chr1 94026210 94026668 -188166996 - L1MD2 LINE L1 -16 6343 5859 237 132 0 0 chr1 94027315 94027353 -188166311 + (TA)n Simple_repeat Simple_repeat 2 39 0 236 239 45 34 chr1 94027360 94027448 -188166216 + L1MC4 LINE L1 6615 6703 -1339 227 258 22 22 chr1 94027482 94027571 -188166093 + L1MC4 LINE L1 6614 6702 -1340 180 176 0 0 chr1 94027576 94027610 -188166054 + (TA)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr1 94028105 94028126 -188165538 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 350 316 181 0 chr1 94029580 94029713 -188163951 - L2 LINE L2 0 3272 3116 2200 114 44 33 chr1 94029767 94030127 -188163537 - THE1B LTR MaLR 0 364 1 11464 98 7 6 chr1 94030127 94031702 -188161962 - THE1B-int LTR MaLR 0 1580 4 1966 143 50 34 chr1 94031705 94032063 -188161601 - THE1B LTR MaLR 0 364 1 2136 119 39 36 chr1 94032501 94032862 -188160802 - THE1B LTR MaLR 0 364 3 2460 257 22 5 chr1 94032865 94033510 -188160154 - L1MB8 LINE L1 -11 6167 5512 236 360 144 8 chr1 94033514 94033639 -188160025 - L2 LINE L2 -572 2742 2601 203 189 0 0 chr1 94034944 94034981 -188158683 + (TTA)n Simple_repeat Simple_repeat 1 37 0 211 283 0 0 chr1 94035531 94035591 -188158073 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 586 224 100 5 chr1 94035900 94036110 -188157554 - MER114 LTR ERV -56 592 363 4710 69 2 2 chr1 94036147 94036756 -188156908 - L1PA7 LINE L1 0 6154 5546 23 0 0 0 chr1 94036827 94036850 -188156814 + AT_rich Low_complexity Low_complexity 1 23 0 366 300 114 48 chr1 94037932 94038185 -188155479 + L1ME LINE L1 5313 5587 -2221 2361 84 0 10 chr1 94038185 94038493 -188155171 + AluY SINE Alu 1 305 -6 366 300 114 48 chr1 94038493 94038512 -188155152 + L1ME LINE L1 5587 5603 -2205 346 261 64 19 chr1 94038570 94038727 -188154937 + L1ME LINE L1 5636 5799 -322 1952 176 3 37 chr1 94039154 94039529 -188154135 - MLT1A1 LTR MaLR -3 362 1 21 57 0 0 chr1 94039941 94039976 -188153688 + AT_rich Low_complexity Low_complexity 1 35 0 892 283 8 26 chr1 94040009 94040274 -188153390 + MIR SINE MIR 2 261 -1 181 407 6 31 chr1 94040677 94040839 -188152825 - L2 LINE L2 -358 2956 2799 256 272 64 48 chr1 94040843 94040968 -188152696 + MER94 DNA DNA 1 127 -7 1677 186 10 10 chr1 94041017 94041313 -188152351 - AluJb SINE Alu -12 300 5 814 167 27 0 chr1 94041712 94041862 -188151802 + LOR1a LTR ERV1 1 154 -343 805 285 18 0 chr1 94042121 94042342 -188151322 - MLT1L LTR MaLR -17 598 374 386 339 101 12 chr1 94042389 94042637 -188151027 - MLT1L LTR MaLR -345 270 1 3479 191 30 71 chr1 94043018 94043816 -188149848 + L1MC1 LINE L1 19 783 -5643 * 7561 215 35 6 chr1 94043798 94043951 -188149713 + L1MC1 LINE L1 3473 3620 -2993 2210 121 0 7 chr1 94043951 94044258 -188149406 + AluSc SINE Alu 4 308 -1 7561 215 35 6 chr1 94044258 94047145 -188146519 + L1MC1 LINE L1 3620 6598 -15 271 361 94 0 chr1 94047435 94047585 -188146079 + MIR SINE MIR 17 180 -63 292 339 130 17 chr1 94047817 94048047 -188145617 - MIR SINE MIR -2 260 5 1068 68 0 0 chr1 94048335 94048482 -188145182 - L1PA12 LINE L1 -1 6167 6021 265 273 68 11 chr1 94048806 94048894 -188144770 + L2 LINE L2 3180 3272 0 183 129 0 0 chr1 94050401 94050432 -188143232 + (CA)n Simple_repeat Simple_repeat 2 32 0 284 338 66 0 chr1 94050948 94051084 -188142580 + MIR SINE MIR 75 219 -43 25 31 0 0 chr1 94051194 94051226 -188142438 + AT_rich Low_complexity Low_complexity 1 32 0 1846 214 101 68 chr1 94053710 94054312 -188139352 - MLT1E2 LTR MaLR -2 624 1 180 0 0 0 chr1 94054410 94054430 -188139234 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 316 335 106 34 chr1 94054472 94054708 -188138956 + L3 LINE CR1 1099 1351 -226 1947 132 36 38 chr1 94055388 94055753 -188137911 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr1 94056107 94056149 -188137515 + AT_rich Low_complexity Low_complexity 1 42 0 275 299 60 26 chr1 94058504 94058621 -188135043 - MIR SINE MIR -65 143 23 1016 276 151 19 chr1 94060954 94061425 -188132239 + MLT1H LTR MaLR 1 533 -16 3138 198 65 16 chr1 94061555 94062284 -188131380 + L1MB8 LINE L1 5414 6177 -1 379 338 63 26 chr1 94062800 94063069 -188130595 + L2 LINE L2 2538 2816 -498 26 52 0 17 chr1 94063182 94063213 -188130451 + AT_rich Low_complexity Low_complexity 1 32 -25 829 180 41 0 chr1 94063213 94063385 -188130279 + L1MB1 LINE L1 5989 6167 -1 26 52 0 17 chr1 94063385 94063411 -188130253 + AT_rich Low_complexity Low_complexity 32 57 0 296 333 99 0 chr1 94063884 94064025 -188129639 + L2 LINE L2 3118 3272 0 861 313 133 14 chr1 94065804 94066219 -188127445 - LTR33 LTR ERVL -37 484 21 213 65 0 0 chr1 94066226 94066257 -188127407 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 372 215 13 27 chr1 94067622 94067771 -188125893 + (CATATA)n Simple_repeat Simple_repeat 3 149 0 623 226 0 6 chr1 94067801 94067982 -188125682 + (CA)n Simple_repeat Simple_repeat 1 180 0 387 324 47 97 chr1 94068269 94068568 -188125096 + L2 LINE L2 2989 3272 0 223 303 117 14 chr1 94068602 94068747 -188124917 - MIR SINE MIR -80 182 23 1281 90 0 0 chr1 94070483 94070650 -188123014 + AluSg/x SINE Alu 142 308 -4 28 48 0 0 chr1 94071316 94071358 -188122306 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr1 94072627 94072672 -188120992 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr1 94074470 94074491 -188119173 + AT_rich Low_complexity Low_complexity 1 21 0 2073 282 155 26 chr1 94074497 94075570 -188118094 - L2 LINE L2 -71 3242 2006 182 214 89 89 chr1 94076653 94076765 -188116899 + L3 LINE CR1 607 718 -859 44 70 0 0 chr1 94076845 94076931 -188116733 + AT_rich Low_complexity Low_complexity 1 86 0 1837 129 47 41 chr1 94077050 94077415 -188116249 - THE1C LTR MaLR -4 371 5 215 310 90 20 chr1 94077443 94077543 -188116121 - MIR SINE MIR -85 177 71 400 169 0 0 chr1 94077560 94077619 -188116045 + MER20 DNA MER1_type 31 89 -130 251 71 24 0 chr1 94078293 94078335 -188115329 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 700 281 159 1 chr1 94078439 94078778 -188114886 + L2 LINE L2 2765 3155 -158 470 311 18 40 chr1 94078800 94079028 -188114636 - LTR16C LTR ERVL -16 475 253 423 302 94 36 chr1 94079740 94080098 -188113566 - MERVL LTR ERVL -529 4956 4628 190 292 111 0 chr1 94080137 94080209 -188113455 + L2 LINE L2 3234 3313 0 186 387 0 0 chr1 94083617 94083692 -188109972 - MIR SINE MIR -72 136 62 227 325 82 41 chr1 94083953 94084147 -188109517 + L2 LINE L2 2616 2817 -497 804 118 0 0 chr1 94084826 94084953 -188108711 + (GAGAA)n Simple_repeat Simple_repeat 4 130 0 211 338 38 12 chr1 94085405 94085485 -188108179 + L2 LINE L2 3148 3229 -43 381 328 97 34 chr1 94087242 94087654 -188106010 - L2 LINE L2 -12 3301 2864 2235 74 0 10 chr1 94088508 94088817 -188104847 + L1PA8 LINE L1 5864 6169 -3 35 24 0 0 chr1 94088817 94088859 -188104805 + AT_rich Low_complexity Low_complexity 1 42 0 2681 259 74 76 chr1 94089557 94090132 -188103532 - MER69 DNA AcHobo -1451 1075 501 2131 180 49 13 chr1 94090132 94090581 -188103083 - L1MD1 LINE L1 0 6242 5778 2681 259 74 76 chr1 94090581 94091080 -188102584 - MER69 DNA AcHobo -2025 501 3 262 282 48 19 chr1 94091459 94091562 -188102102 - MIR SINE MIR -29 233 128 2345 264 46 5 chr1 94091588 94092356 -188101308 - L1M4 LINE L1 -1396 4750 3952 966 249 19 57 chr1 94092399 94092768 -188100896 - L1ME LINE L1 -3412 3529 3175 1573 263 82 62 chr1 94092791 94094328 -188099336 - L1ME LINE L1 -3991 3131 1344 249 33 0 0 chr1 94094328 94094358 -188099306 + (TC)n Simple_repeat Simple_repeat 1 30 0 1573 263 82 62 chr1 94094358 94095056 -188098608 - L1ME LINE L1 -5778 1344 661 734 322 44 26 chr1 94095386 94095720 -188097944 - L1ME LINE L1 -5958 465 120 2464 81 0 0 chr1 94095720 94096027 -188097637 - AluY SINE Alu -4 307 1 734 322 44 26 chr1 94096027 94096120 -188097544 - L1ME LINE L1 -6303 120 30 284 386 21 7 chr1 94096142 94096282 -188097382 - MIR SINE MIR -120 142 1 203 304 20 69 chr1 94097027 94097129 -188096535 - MIR SINE MIR -50 212 116 304 381 50 7 chr1 94097693 94097832 -188095832 + L2 LINE L2 3128 3272 0 183 80 0 0 chr1 94098071 94098096 -188095568 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr1 94098255 94098277 -188095387 + AT_rich Low_complexity Low_complexity 1 22 0 298 290 97 0 chr1 94098627 94098720 -188094944 - L2 LINE L2 0 3272 3171 282 338 30 2 chr1 94100482 94100608 -188093056 - MIR SINE MIR -65 143 16 2144 135 0 0 chr1 94100924 94101228 -188092436 + AluSx SINE Alu 1 304 -8 1643 91 0 30 chr1 94101239 94101471 -188092193 + AluSx SINE Alu 19 243 -69 2134 124 0 0 chr1 94102384 94102682 -188090982 - AluY SINE Alu -12 299 2 44 80 0 0 chr1 94102904 94103004 -188090660 + AT_rich Low_complexity Low_complexity 1 100 0 260 88 26 62 chr1 94103004 94103117 -188090547 + (TTATA)n Simple_repeat Simple_repeat 5 113 0 30 45 0 0 chr1 94103117 94103161 -188090503 + AT_rich Low_complexity Low_complexity 1 44 0 368 335 122 17 chr1 94103167 94103397 -188090267 - MIR SINE MIR -4 258 5 1675 209 98 12 chr1 94103960 94104390 -188089274 + MLT1C LTR MaLR 1 467 0 187 156 0 0 chr1 94105816 94105848 -188087816 - L2 LINE L2 0 3272 3241 637 290 116 5 chr1 94105867 94106091 -188087573 - MIR SINE MIR -1 261 13 213 220 176 33 chr1 94106655 94106746 -188086918 - MIR SINE MIR 0 262 159 323 224 0 0 chr1 94107002 94107060 -188086604 + MER2 DNA MER2_type 35 92 -253 22 0 0 0 chr1 94107080 94107102 -188086562 + AT_rich Low_complexity Low_complexity 1 22 0 216 283 67 0 chr1 94107109 94107169 -188086495 - MIR SINE MIR -15 247 184 960 241 36 12 chr1 94107202 94107455 -188086209 - MIR SINE MIR 0 262 4 346 277 40 90 chr1 94107455 94107632 -188086032 + MIR SINE MIR 20 187 -75 524 310 109 21 chr1 94107913 94108152 -188085512 - MIR SINE MIR 0 262 3 355 353 29 17 chr1 94109235 94109408 -188084256 + MIR SINE MIR 46 220 -42 2460 31 0 0 chr1 94110125 94110413 -188083251 - L1PA5 LINE L1 -4 6150 5863 1477 155 33 98 chr1 94111030 94111397 -188082267 + MER2 DNA MER2_type 1 343 -1 225 284 99 0 chr1 94111436 94111517 -188082147 + MER20B DNA MER1_type 87 175 -608 223 302 93 39 chr1 94112308 94112437 -188081227 - MIR3 SINE MIR -36 172 37 1025 246 18 0 chr1 94112968 94113188 -188080476 + MER58A DNA MER1_type 1 224 0 21 82 0 0 chr1 94115485 94115534 -188078130 + AT_rich Low_complexity Low_complexity 1 49 0 201 231 0 0 chr1 94115792 94115831 -188077833 - L2 LINE L2 0 3272 3234 181 255 39 0 chr1 94116903 94116954 -188076710 - MIR SINE MIR -124 138 86 288 0 0 0 chr1 94117221 94117253 -188076411 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 30 0 0 chr1 94118068 94118101 -188075563 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 94118963 94118988 -188074676 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr1 94120559 94120583 -188073081 + AT_rich Low_complexity Low_complexity 1 24 0 2102 174 11 3 chr1 94120745 94121107 -188072557 - MLT1A1 LTR MaLR 0 365 1 2341 81 0 33 chr1 94122092 94122399 -188071265 + AluY SINE Alu 1 297 -14 2349 164 28 25 chr1 94122823 94123255 -188070409 - Tigger2a DNA MER2_type -1 433 1 396 0 0 0 chr1 94124281 94124325 -188069339 + (TTG)n Simple_repeat Simple_repeat 1 44 0 1955 113 4 0 chr1 94124354 94124620 -188069044 - AluSp SINE Alu -46 267 1 638 253 18 12 chr1 94124620 94124786 -188068878 + MER58B DNA MER1_type 172 338 -3 232 252 131 28 chr1 94124967 94125074 -188068590 + MIR SINE MIR 11 128 -134 23 33 0 0 chr1 94125216 94125246 -188068418 + AT_rich Low_complexity Low_complexity 1 30 0 257 0 30 0 chr1 94125698 94125731 -188067933 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 365 261 143 70 chr1 94126484 94126771 -188066893 + L2 LINE L2 3006 3313 0 266 316 82 64 chr1 94127005 94127176 -188066488 - MIR3 SINE MIR -25 183 10 279 289 164 35 chr1 94127256 94127457 -188066207 + MLT1L LTR MaLR 1 227 -388 225 311 57 19 chr1 94127523 94127629 -188066035 + MLT1K LTR MaLR 296 405 -183 435 245 138 44 chr1 94127646 94127805 -188065859 - MER58B DNA MER1_type -1 340 167 194 250 167 0 chr1 94129271 94129331 -188064333 + MIR3 SINE MIR 94 163 -45 793 154 0 37 chr1 94132517 94132653 -188061011 - FLAM_A SINE Alu -1 132 2 676 276 32 65 chr1 94132655 94132887 -188060777 - L1MC/D LINE L1 -2071 5737 5518 2015 119 6 47 chr1 94132887 94133207 -188060457 - AluSq SINE Alu -6 307 1 676 276 32 65 chr1 94133207 94133314 -188060350 - L1MC/D LINE L1 -2290 5518 5409 335 292 82 23 chr1 94133302 94133521 -188060143 - HAL1b LINE L1 -807 541 310 * 278 249 38 2 chr1 94134504 94134646 -188059018 - L1MC/D LINE L1 -2630 3516 3369 480 292 81 60 chr1 94135500 94135798 -188057866 + L2 LINE L2 3001 3304 -9 315 332 31 26 chr1 94136030 94136223 -188057441 + L1M4 LINE L1 4639 4832 -1314 372 167 15 0 chr1 94137667 94137733 -188055931 - THE1C LTR MaLR 0 375 309 668 216 68 14 chr1 94137833 94137981 -188055683 - THE1C LTR MaLR -219 156 1 1890 162 77 6 chr1 94138113 94138477 -188055187 - MLT1B LTR MaLR 0 390 1 3784 292 95 35 chr1 94138531 94138684 -188054980 + L2 LINE L2 1117 1259 -2054 849 205 27 11 chr1 94138684 94138869 -188054795 - MER5A DNA MER1_type 0 189 2 3784 292 95 35 chr1 94138869 94140781 -188052883 + L2 LINE L2 1259 3305 -8 1786 199 40 9 chr1 94140906 94141334 -188052330 - Charlie4a DNA MER1_type -1 507 67 1393 161 21 112 chr1 94141685 94142015 -188051649 + AluJo SINE Alu 1 300 -12 23 68 0 0 chr1 94142049 94142093 -188051571 + AT_rich Low_complexity Low_complexity 1 44 0 288 119 0 45 chr1 94142122 94142189 -188051475 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 634 186 23 51 chr1 94142771 94142948 -188050716 + Charlie1 DNA MER1_type 2576 2747 -14 2124 110 0 17 chr1 94143128 94143427 -188050237 + AluY SINE Alu 1 294 -17 208 321 24 0 chr1 94144929 94145013 -188048651 + L2 LINE L2 2384 2469 -845 908 273 37 62 chr1 94145404 94145756 -188047908 - LTR16C LTR ERVL 0 491 149 180 344 122 11 chr1 94146094 94146184 -188047480 - MIR SINE MIR -115 147 48 181 297 253 0 chr1 94150218 94150309 -188043355 - L2 LINE L2 -25 3247 3134 435 371 79 18 chr1 94150496 94150776 -188042888 + L2 LINE L2 2976 3272 0 261 310 0 0 chr1 94151645 94151716 -188041948 + L2 LINE L2 3243 3313 0 237 167 0 76 chr1 94151871 94151911 -188041753 + A-rich Low_complexity Low_complexity 3 38 -25 777 247 0 0 chr1 94151911 94152085 -188041579 + MER69A DNA AcHobo 2 175 -2 237 167 0 76 chr1 94152085 94152110 -188041554 + A-rich Low_complexity Low_complexity 38 63 0 249 186 0 0 chr1 94152338 94152381 -188041283 - MIR SINE MIR -111 151 109 778 247 18 55 chr1 94152412 94152631 -188041033 + MLT1E2 LTR MaLR 17 227 -399 506 290 30 40 chr1 94152980 94153308 -188040356 + L1MEc LINE L1 1431 1755 -4641 1679 208 31 6 chr1 94153510 94153866 -188039798 - MLT1A1 LTR MaLR 0 365 1 213 266 0 38 chr1 94153990 94154069 -188039595 + A-rich Low_complexity Low_complexity 5 80 0 242 211 132 72 chr1 94154117 94154269 -188039395 + L1MEc LINE L1 2246 2406 -3809 491 255 71 47 chr1 94154278 94154701 -188038963 + L1MEc LINE L1 2932 3364 -2851 262 371 107 7 chr1 94155177 94155317 -188038347 + L2 LINE L2 3113 3266 -6 221 325 177 39 chr1 94158591 94159104 -188034560 - L2 LINE L2 -1124 2190 1607 266 388 30 0 chr1 94159136 94159301 -188034363 - L2 LINE L2 -1868 1446 1277 1938 284 109 18 chr1 94160326 94161070 -188032594 - L2 LINE L2 -493 2821 2010 218 98 73 0 chr1 94161471 94161512 -188032152 + T-rich Low_complexity Low_complexity 6 49 0 22 0 0 0 chr1 94162511 94162533 -188031131 + AT_rich Low_complexity Low_complexity 1 22 0 661 186 32 0 chr1 94163339 94163463 -188030201 + Charlie1 DNA MER1_type 1 128 -2633 1168 216 112 3 chr1 94163531 94163897 -188029767 + Charlie1 DNA MER1_type 2356 2761 0 1722 320 131 23 chr1 94163949 94165343 -188028321 + L2 LINE L2 1740 3294 -19 2113 136 7 0 chr1 94165661 94165971 -188027693 - AluSq SINE Alu -1 312 1 205 175 25 0 chr1 94166879 94166919 -188026745 + CT-rich Low_complexity Low_complexity 2 42 0 447 216 88 0 chr1 94168368 94168470 -188025194 - MER94 DNA DNA -22 112 2 1146 356 58 16 chr1 94168627 94169261 -188024403 + L3 LINE CR1 915 1575 -2 255 261 17 118 chr1 94169404 94169523 -188024141 + MER5A DNA MER1_type 23 129 -60 656 277 92 36 chr1 94169698 94170090 -188023574 - MLT1K LTR MaLR -9 579 100 195 129 0 0 chr1 94172158 94172189 -188021475 + (GA)n Simple_repeat Simple_repeat 2 32 0 198 373 17 77 chr1 94172717 94172950 -188020714 + L2 LINE L2 2716 2934 -380 2053 125 7 0 chr1 94172977 94173295 -188020369 - AluSx SINE Alu 0 320 1 1089 183 10 0 chr1 94173684 94173881 -188019783 - MLT1B LTR MaLR 0 390 192 983 153 34 23 chr1 94174068 94174244 -188019420 - MLT1B LTR MaLR -212 178 1 595 361 68 36 chr1 94174563 94174883 -188018781 - MLT1K LTR MaLR -7 581 235 213 65 0 0 chr1 94174883 94174914 -188018750 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 595 361 68 36 chr1 94174914 94175141 -188018523 - MLT1K LTR MaLR -353 235 17 1920 146 3 0 chr1 94175851 94176139 -188017525 + AluSp SINE Alu 1 289 -24 30 0 0 0 chr1 94176139 94176169 -188017495 + AT_rich Low_complexity Low_complexity 1 30 0 320 303 176 49 chr1 94176818 94177068 -188016596 - L2 LINE L2 -2527 787 570 288 53 0 0 chr1 94177068 94177106 -188016558 + (TG)n Simple_repeat Simple_repeat 1 38 0 320 303 176 49 chr1 94177106 94177469 -188016195 - L2 LINE L2 -2744 570 96 1510 251 57 37 chr1 94177656 94178111 -188015553 - MLT1F LTR MaLR -75 467 4 445 311 41 107 chr1 94178120 94178558 -188015106 - MLT1F-int LTR MaLR -2 1369 961 1708 256 54 12 chr1 94180408 94180923 -188012741 - L1ME1 LINE L1 -122 6044 5508 231 167 21 0 chr1 94180958 94181006 -188012658 - L1ME1 LINE L1 -814 5428 5380 218 266 234 11 chr1 94181022 94181116 -188012548 + L2 LINE L2 3199 3313 0 233 255 0 0 chr1 94181458 94181505 -188012159 + polypyrimidine Low_complexity Low_complexity 2 48 0 367 273 61 30 chr1 94181517 94181649 -188012015 - MIR SINE MIR -10 252 117 346 354 116 5 chr1 94182913 94183128 -188010536 - L2 LINE L2 -875 2439 2201 873 277 32 66 chr1 94183860 94184256 -188009408 - LTR16A LTR ERVL -4 453 51 394 287 33 40 chr1 94184827 94184977 -188008687 + MIR SINE MIR 20 168 -94 416 328 21 21 chr1 94185004 94185193 -188008471 - MIR SINE MIR 0 262 74 6147 128 4 2 chr1 94186750 94187709 -188005955 - L1P LINE L1 -1622 4524 3564 5878 102 34 5 chr1 94187710 94188656 -188005008 + L1PA11 LINE L1 5203 6174 0 430 294 112 24 chr1 94188710 94188937 -188004727 - MIR SINE MIR -11 251 11 248 250 26 52 chr1 94189170 94189286 -188004378 - MER97c DNA MER1_type? 0 1090 978 2908 227 106 5 chr1 94189295 94190069 -188003595 - MER97b DNA MER1_type? -200 853 2 2044 110 6 52 chr1 94190257 94190584 -188003080 - AluSx SINE Alu 0 312 1 348 24 0 0 chr1 94191276 94191317 -188002347 + (CA)n Simple_repeat Simple_repeat 2 42 0 456 302 21 58 chr1 94191544 94191733 -188001931 + L2 LINE L2 312 493 -2821 3627 62 50 0 chr1 94191746 94192231 -188001433 - L1PA13 LINE L1 -7 6156 5648 192 304 116 27 chr1 94192294 94192406 -188001258 + L2 LINE L2 480 601 -2713 1178 308 179 20 chr1 94192413 94193128 -188000536 + L2 LINE L2 573 1401 -1913 6969 206 43 19 chr1 94193142 94193303 -188000361 + L1MB8 LINE L1 3392 3548 -2785 2298 110 0 0 chr1 94193303 94193602 -188000062 - AluSx SINE Alu -13 299 1 6969 206 43 19 chr1 94193602 94195596 -187998068 + L1MB8 LINE L1 3548 5612 -721 2282 60 3 60 chr1 94195596 94195913 -187997751 - AluY SINE Alu -12 299 1 6969 206 43 19 chr1 94195913 94196103 -187997561 + L1MB8 LINE L1 5612 5796 -537 526 290 0 0 chr1 94196115 94196239 -187997425 - L2 LINE L2 -1099 2215 2092 3071 123 11 43 chr1 94196284 94196316 -187997348 + L1MC1 LINE L1 5799 5831 -502 2368 100 3 0 chr1 94196316 94196627 -187997037 + AluSx SINE Alu 1 312 0 3071 123 11 43 chr1 94196627 94196874 -187996790 + L1MC1 LINE L1 5831 6054 -279 2170 118 0 0 chr1 94196874 94197170 -187996494 + AluSx SINE Alu 1 296 -16 3071 123 11 43 chr1 94197170 94197442 -187996222 + L1MC1 LINE L1 6054 6333 0 2562 299 120 32 chr1 94197444 94197787 -187995877 + L2 LINE L2 1413 1724 -1589 931 80 0 0 chr1 94197787 94197912 -187995752 + L1PA7 LINE L1 6030 6154 0 2562 299 120 32 chr1 94197912 94199162 -187994502 + L2 LINE L2 1724 3149 -164 879 197 221 24 chr1 94200050 94200439 -187993225 - LTR50 LTR ERVL -35 760 210 1893 39 0 0 chr1 94301244 94301509 -187892155 + L1PA3 LINE L1 5900 6164 0 23 0 0 0 chr1 94302122 94302145 -187891519 + AT_rich Low_complexity Low_complexity 1 23 0 908 163 20 0 chr1 94302793 94302946 -187890718 + AluSg/x SINE Alu 156 311 -1 355 246 0 0 chr1 94302956 94303050 -187890614 + L1ME3A LINE L1 5469 5561 -603 336 121 0 45 chr1 94303083 94303149 -187890515 + Alu SINE Alu 238 300 0 1211 275 44 5 chr1 94303149 94303560 -187890104 + L1ME3A LINE L1 5570 5996 -174 1191 176 8 23 chr1 94303598 94303859 -187889805 + L1MB8 LINE L1 5922 6178 0 291 241 153 56 chr1 94304252 94304501 -187889163 + L2 LINE L2 2842 3114 -158 352 206 115 18 chr1 94304540 94304670 -187888994 + MIR SINE MIR 53 188 -74 218 250 15 15 chr1 94304736 94304804 -187888860 + MIR SINE MIR 195 262 0 311 311 39 31 chr1 94305286 94305464 -187888200 - MER5B DNA MER1_type -12 177 2 1571 178 93 33 chr1 94306029 94306427 -187887237 + MSTC LTR MaLR 7 428 0 629 294 75 36 chr1 94306428 94306680 -187886984 + MIR SINE MIR 1 262 0 900 135 0 0 chr1 94307271 94307404 -187886260 + FLAM_C SINE Alu 1 133 0 1181 140 18 0 chr1 94307416 94307587 -187886077 + AluSq SINE Alu 1 174 -139 421 312 103 67 chr1 94307997 94308279 -187885385 - L2 LINE L2 -8 3264 2973 2441 102 0 0 chr1 94308340 94308653 -187885011 + AluSq SINE Alu 1 313 0 24 32 0 0 chr1 94308837 94308868 -187884796 + AT_rich Low_complexity Low_complexity 1 31 0 231 161 32 0 chr1 94308998 94309060 -187884604 - L1MC4 LINE L1 -1339 6703 6640 1721 171 0 11 chr1 94309087 94309362 -187884302 - AluJo SINE Alu -40 272 1 2237 107 7 13 chr1 94309524 94309842 -187883822 - AluSx SINE Alu 0 316 1 2569 65 0 0 chr1 94309994 94310301 -187883363 - AluY SINE Alu -4 307 1 964 191 0 0 chr1 94310428 94310596 -187883068 - FAM SINE Alu -6 169 2 340 281 180 18 chr1 94310717 94310884 -187882780 + L2 LINE L2 3118 3311 -2 271 335 67 67 chr1 94310971 94311302 -187882362 - L2 LINE L2 -990 2324 1994 1787 112 4 34 chr1 94311860 94312127 -187881537 - AluSq SINE Alu -54 259 1 939 164 26 0 chr1 94312197 94312349 -187881315 - FAM SINE Alu -19 156 1 271 169 31 0 chr1 94312448 94312513 -187881151 - HAL1 LINE L1 -340 2167 2101 1657 170 64 0 chr1 94312627 94312892 -187880772 - AluJb SINE Alu -30 282 1 1196 253 89 39 chr1 94313046 94313529 -187880135 - HAL1 LINE L1 -585 1922 1416 605 177 57 32 chr1 94313571 94313695 -187879969 + FLAM_A SINE Alu 1 127 -6 3056 80 42 9 chr1 94315125 94315480 -187878184 - L1PB1 LINE L1 0 6151 5809 414 57 0 0 chr1 94315480 94315533 -187878131 + (TA)n Simple_repeat Simple_repeat 2 54 0 216 0 0 0 chr1 94315532 94315556 -187878108 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 3056 80 42 9 chr1 94315533 94315648 -187878016 - L1PB1 LINE L1 -342 5809 5689 536 328 92 40 chr1 94315748 94316321 -187877343 - L2 LINE L2 -848 2466 1864 689 176 17 0 chr1 94316449 94316568 -187877096 + AluJb SINE Alu 1 121 -191 827 136 0 0 chr1 94316668 94316786 -187876878 - AluSq/x SINE Alu -195 118 1 1015 288 29 33 chr1 94316786 94317268 -187876396 - L2 LINE L2 -151 3162 2686 1607 163 0 0 chr1 94317350 94317596 -187876068 + AluJb SINE Alu 1 246 -66 481 117 106 0 chr1 94318866 94318960 -187874704 - Tigger4(Zombi) DNA MER2_type -2627 104 1 747 53 35 18 chr1 94319310 94319423 -187874241 + MER4E LTR ERV1 652 766 0 4745 114 51 28 chr1 94319423 94320129 -187873535 + MER4E-int LTR ERV1 1 795 -5963 180 0 0 0 chr1 94320129 94320149 -187873515 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 4745 114 51 28 chr1 94320149 94320513 -187873151 + MER4E-int LTR ERV1 795 1149 -5609 474 18 0 0 chr1 94320513 94320568 -187873096 + (TG)n Simple_repeat Simple_repeat 2 56 0 4425 109 74 75 chr1 94320586 94321944 -187871720 + MER4E-int LTR ERV1 1266 2513 -4085 6108 84 15 20 chr1 94321944 94322790 -187870874 + L1PB1 LINE L1 5168 6021 -130 2318 110 0 0 chr1 94322790 94323099 -187870565 + AluSc SINE Alu 1 309 0 6108 84 15 20 chr1 94323099 94323227 -187870437 + L1PB1 LINE L1 6021 6148 -3 1977 203 51 26 chr1 94324057 94324549 -187869115 + MLT1D LTR MaLR 1 504 -1 22 56 0 0 chr1 94324756 94324792 -187868872 + AT_rich Low_complexity Low_complexity 1 36 0 313 254 19 144 chr1 94325602 94325866 -187867798 - MIR SINE MIR 0 262 32 1383 177 141 128 chr1 94326129 94326676 -187866988 - MLT2B3 LTR ERVL 0 554 1 288 244 191 0 chr1 94326731 94326760 -187866904 - L1MA10 LINE L1 -10 6324 6296 2769 223 43 28 chr1 94326760 94327804 -187865860 - L1ME1 LINE L1 -48 6118 5063 1918 253 27 27 chr1 94327801 94327986 -187865678 + L1M4 LINE L1 3515 3699 -2447 * 2164 97 6 38 chr1 94327986 94328305 -187865359 + AluSx SINE Alu 1 309 -3 1918 253 27 27 chr1 94328305 94328752 -187864912 + L1M4 LINE L1 3698 4147 -1999 1896 206 56 50 chr1 94328769 94328877 -187864787 + L1M4 LINE L1 4385 4491 -1655 2391 82 3 0 chr1 94328877 94329171 -187864493 + AluSx SINE Alu 6 300 -12 1896 206 56 50 chr1 94329171 94329706 -187863958 + L1M4 LINE L1 4491 5032 -1114 569 292 26 24 chr1 94329723 94330100 -187863564 - L1ME1 LINE L1 -3316 2830 2453 280 331 93 43 chr1 94330270 94330647 -187863017 - L2 LINE L2 -191 3081 2689 226 331 61 31 chr1 94330688 94330851 -187862813 + MLT1J LTR MaLR 7 174 -337 225 0 0 0 chr1 94330918 94330943 -187862721 + (T)n Simple_repeat Simple_repeat 1 25 0 405 356 35 10 chr1 94331730 94331932 -187861732 + L1M4 LINE L1 4925 5131 -1015 207 162 0 0 chr1 94331953 94331990 -187861674 + A-rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 94332026 94332049 -187861615 + AT_rich Low_complexity Low_complexity 1 23 0 1221 241 78 17 chr1 94332612 94332956 -187860708 + MLT1A1 LTR MaLR 1 365 0 1625 322 20 29 chr1 94333084 94333799 -187859865 - ERVL LTR ERVL -3259 2505 1798 464 321 31 0 chr1 94333881 94334040 -187859624 - ERVL LTR ERVL -3423 1573 1410 275 388 12 0 chr1 94334273 94334438 -187859226 - ERVL LTR ERVL -3869 1127 961 2883 180 20 75 chr1 94334542 94335225 -187858439 + MER82 DNA MER2_type 1 646 -7 620 191 0 18 chr1 94336052 94336162 -187857502 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 4033 116 28 37 chr1 94336153 94336911 -187856753 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 327 247 0 12 chr1 94336914 94336999 -187856665 - L2 LINE L2 -782 2532 2449 1531 285 74 38 chr1 94337012 94337644 -187856020 - L2 LINE L2 -420 2894 2240 229 218 26 0 chr1 94337857 94337935 -187855729 + CT-rich Low_complexity Low_complexity 1 80 0 1859 108 47 4 chr1 94338280 94338538 -187855126 + AluSg SINE Alu 35 303 -7 1808 112 26 14 chr1 94338582 94338920 -187854744 + L1P5 LINE L1 5267 5604 -547 1413 197 0 55 chr1 94339093 94339383 -187854281 + AluJb SINE Alu 1 274 -38 412 185 0 43 chr1 94339384 94339476 -187854188 - AluSc SINE Alu -36 273 186 379 276 23 19 chr1 94339647 94339861 -187853803 + L1MB2 LINE L1 5736 5950 -221 344 356 79 36 chr1 94340331 94340609 -187853055 - L2 LINE L2 -417 2897 2608 818 256 30 52 chr1 94340755 94341060 -187852604 + L2 LINE L2 3016 3313 0 7381 39 6 0 chr1 94341167 94342739 -187850925 - L1PA5 LINE L1 0 6154 4578 25 0 0 0 chr1 94343163 94343188 -187850476 + AT_rich Low_complexity Low_complexity 1 25 0 2115 112 0 0 chr1 94344280 94344557 -187849107 - AluSc SINE Alu -29 280 4 2084 121 6 25 chr1 94345372 94345687 -187847977 - AluSp SINE Alu -4 309 1 391 314 20 26 chr1 94346041 94346194 -187847470 + MIR SINE MIR 106 257 -5 1169 285 94 35 chr1 94346222 94346847 -187846817 - MLT2F LTR ERVL 0 663 2 846 244 107 72 chr1 94346851 94347282 -187846382 - ERVL-F LTR ERVL -11 5753 5308 1385 221 31 9 chr1 94347440 94347789 -187845875 - L1MB7 LINE L1 -10 6174 5818 1102 264 26 18 chr1 94347790 94348131 -187845533 - ERVL-F LTR ERVL -592 5172 4829 688 192 42 0 chr1 94348400 94348567 -187845097 - MER96B DNA MER1_type? -241 176 3 6160 281 61 15 chr1 94348569 94350625 -187843039 - ERVL-F LTR ERVL -929 4835 2685 5059 164 82 1 chr1 94350640 94352067 -187841597 + L1PBa LINE L1 16 1706 -5157 473 157 20 0 chr1 94352064 94352166 -187841498 + L1 LINE L1 2716 2819 -3327 * 1117 175 0 0 chr1 94352209 94352432 -187841232 - L1 LINE L1 -1449 4697 4475 5184 205 26 4 chr1 94352449 94353734 -187839930 + L1 LINE L1 2826 4139 -2007 295 122 0 0 chr1 94354236 94354277 -187839387 - MLT2B1 LTR ERVL -92 428 388 673 243 90 5 chr1 94354295 94354484 -187839180 - MIR SINE MIR -1 261 57 1729 179 215 25 chr1 94354623 94354661 -187839003 - MLT2B1 LTR ERVL 0 520 491 504 32 0 0 chr1 94354661 94354723 -187838941 + (TG)n Simple_repeat Simple_repeat 2 63 0 1729 179 215 25 chr1 94354723 94355121 -187838543 - MLT2B1 LTR ERVL -29 491 1 9095 150 54 13 chr1 94355122 94356797 -187836867 - ERVL-B1 LTR ERVL -9 5755 4012 2452 114 19 6 chr1 94356797 94357156 -187836508 + THE1B LTR MaLR 1 364 0 988 138 18 0 chr1 94357156 94357323 -187836341 + THE1B-int LTR MaLR 1 170 -1410 * 7523 129 53 12 chr1 94357300 94358512 -187835152 + THE1B-int LTR MaLR 310 1571 -9 2499 108 17 6 chr1 94358514 94358874 -187834790 + THE1B LTR MaLR 1 364 0 7864 164 38 19 chr1 94358874 94359821 -187833843 - ERVL-B1 LTR ERVL -1748 4016 3031 3442 65 23 0 chr1 94359821 94360255 -187833409 - MLT2A1 LTR ERVL 0 444 1 7864 164 38 19 chr1 94360255 94360794 -187832870 - ERVL-B1 LTR ERVL -2733 3031 2503 272 95 0 0 chr1 94360798 94360840 -187832824 + MADE1 DNA Mariner 5 46 -34 2098 91 25 0 chr1 94360858 94361162 -187832502 - AluSx SINE Alu 0 311 1 1067 89 0 0 chr1 94361162 94361297 -187832367 - AluSq/x SINE Alu -176 136 2 365 61 0 0 chr1 94361298 94361347 -187832317 + MADE1 DNA Mariner 32 80 0 1630 174 10 0 chr1 94361347 94361641 -187832023 - ERVL-B1 LTR ERVL -3260 2504 2208 663 130 9 0 chr1 94362257 94362365 -187831299 - MLT1B LTR MaLR -1 389 281 668 346 13 36 chr1 94362786 94363089 -187830575 + L3 LINE CR1 944 1239 -338 433 304 83 25 chr1 94363328 94363532 -187830132 + L3 LINE CR1 1361 1576 -1 429 320 77 26 chr1 94363687 94363999 -187829665 - MLT1I LTR MaLR -3 406 79 1872 106 8 8 chr1 94364866 94365122 -187828542 + AluSg SINE Alu 47 302 -8 460 296 117 0 chr1 94365207 94365369 -187828295 + MIR SINE MIR 3 183 -79 7251 169 49 36 chr1 94366126 94367154 -187826510 + MER4C-int LTR ERV1 4854 5867 -731 222 37 0 0 chr1 94367154 94367181 -187826483 + (GA)n Simple_repeat Simple_repeat 2 28 0 7251 169 49 36 chr1 94367181 94367353 -187826311 + MER4C-int LTR ERV1 5867 6035 -563 2459 96 8 8 chr1 94367353 94367708 -187825956 + THE1A LTR MaLR 1 355 0 7251 169 49 36 chr1 94367708 94368227 -187825437 + MER4C-int LTR ERV1 6035 6596 -2 2714 103 87 18 chr1 94368235 94368670 -187824994 + MER4C LTR ERV1 1 465 0 1731 195 132 11 chr1 94368877 94369323 -187824341 - MER101B LTR ERV1 -67 503 4 341 340 146 0 chr1 94370089 94370233 -187823431 + MIR3 SINE MIR 38 202 -6 204 253 147 13 chr1 94370445 94370520 -187823144 - L2 LINE L2 -54 3218 3134 568 221 136 7 chr1 94370699 94370853 -187822811 + MIR SINE MIR 47 220 -42 42 78 0 9 chr1 94371906 94372009 -187821655 + AT_rich Low_complexity Low_complexity 1 104 -11 515 101 13 0 chr1 94372009 94372088 -187821576 - MADE1 DNA Mariner 0 80 1 42 78 0 9 chr1 94372088 94372100 -187821564 + AT_rich Low_complexity Low_complexity 104 115 0 2309 98 3 0 chr1 94372587 94372892 -187820772 + AluSp SINE Alu 1 306 -7 210 91 0 0 chr1 94373088 94373121 -187820543 + (TA)n Simple_repeat Simple_repeat 2 34 0 2274 93 3 16 chr1 94373237 94373549 -187820115 + AluSc SINE Alu 1 308 -1 1137 236 53 19 chr1 94373866 94374313 -187819351 - MER74A LTR ERVL -13 545 1 1624 252 44 7 chr1 94374852 94375280 -187818384 + L2 LINE L2 2076 2519 -795 2688 117 21 0 chr1 94375316 94375734 -187817930 - L1PA13 LINE L1 0 6163 5737 1470 112 0 0 chr1 94375734 94375949 -187817715 + L1PA13 LINE L1 5511 5725 -436 3100 272 101 31 chr1 94376085 94376256 -187817408 - L1MCc LINE L1 -4896 1527 1369 1833 176 0 22 chr1 94376256 94376575 -187817089 - AluJo SINE Alu 0 312 1 3100 272 101 31 chr1 94376575 94377768 -187815896 - L1MCc LINE L1 -5054 1369 67 1547 222 3 13 chr1 94377947 94378262 -187815402 + AluJo SINE Alu 1 312 0 231 36 0 0 chr1 94378599 94378627 -187815037 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr1 94378714 94378736 -187814928 + AT_rich Low_complexity Low_complexity 1 22 0 807 164 0 0 chr1 94382085 94382207 -187811457 - FLAM_C SINE Alu -11 122 1 451 368 72 27 chr1 94382213 94382615 -187811049 + HAL1 LINE L1 1403 1822 -685 2146 103 57 14 chr1 94382681 94383030 -187810634 + THE1C LTR MaLR 1 364 -11 1868 154 109 3 chr1 94383807 94384137 -187809527 - MLT1A1 LTR MaLR 0 365 1 1404 185 91 0 chr1 94384138 94384392 -187809272 - AluJo SINE Alu -21 291 15 423 152 0 0 chr1 94384425 94384504 -187809160 + (CA)n Simple_repeat Simple_repeat 2 80 0 479 319 48 27 chr1 94384854 94385651 -187808013 + L1M4 LINE L1 3111 3936 -2210 308 292 118 71 chr1 94385705 94385866 -187807798 + L1M4 LINE L1 4018 4170 -1976 1450 200 15 0 chr1 94385866 94386136 -187807528 - AluJo SINE Alu -38 274 1 308 292 118 71 chr1 94386136 94386382 -187807282 + L1M4 LINE L1 4170 4444 -1702 247 302 0 35 chr1 94386824 94386924 -187806740 + MER5B DNA MER1_type 10 106 -83 23 0 0 0 chr1 94387099 94387122 -187806542 + AT_rich Low_complexity Low_complexity 1 23 0 472 299 0 0 chr1 94387213 94387330 -187806334 + MIR SINE MIR 52 168 -94 191 290 50 40 chr1 94389254 94389354 -187804310 + MIR SINE MIR 156 256 -6 22 0 0 0 chr1 94390323 94390345 -187803319 + GC_rich Low_complexity Low_complexity 1 22 0 349 257 159 18 chr1 94391338 94391451 -187802213 - MIR SINE MIR -127 135 7 467 286 92 37 chr1 94393389 94393844 -187799820 - L1ME4a LINE L1 -33 6088 5609 2274 148 44 12 chr1 94393893 94394306 -187799358 - MSTB LTR MaLR 0 426 1 195 42 0 0 chr1 94396750 94396774 -187796890 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 54 chr1 94397887 94397908 -187795756 + AT_rich Low_complexity Low_complexity 1 21 -14 1911 168 7 0 chr1 94397908 94398199 -187795465 - AluJo SINE Alu -19 293 1 22 0 0 54 chr1 94398199 94398214 -187795450 + AT_rich Low_complexity Low_complexity 21 35 0 4181 150 38 20 chr1 94398226 94399037 -187794627 - L1MB2 LINE L1 -41 6941 6116 * 5945 160 30 37 chr1 94399033 94399088 -187794576 + L1PA16 LINE L1 4121 4175 -1991 2844 13 0 0 chr1 94399088 94399396 -187794268 + AluYb8 SINE Alu 1 308 -10 5945 160 30 37 chr1 94399396 94400556 -187793108 + L1PA16 LINE L1 4175 5318 -848 2175 107 0 3 chr1 94400556 94400847 -187792817 + AluSc SINE Alu 1 290 -19 5945 160 30 37 chr1 94400847 94401681 -187791983 + L1PA16 LINE L1 5318 6157 -9 826 199 30 5 chr1 94401699 94401900 -187791764 - L1MB2 LINE L1 -830 6127 5922 2924 211 54 123 chr1 94402140 94402700 -187790964 - L1MB2 LINE L1 -1542 5415 4818 1930 136 20 3 chr1 94402700 94403001 -187790663 - AluSx SINE Alu -6 306 1 2924 211 54 123 chr1 94403001 94403836 -187789828 - L1MB2 LINE L1 -2139 4818 4117 222 37 0 0 chr1 94403850 94403877 -187789787 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 433 118 15 0 chr1 94403880 94403948 -187789716 - FLAM SINE Alu -26 117 49 251 167 10 98 chr1 94403952 94403998 -187789666 - L1MB2 LINE L1 -2848 4109 4075 2139 158 64 83 chr1 94403998 94404563 -187789101 + MLT2B3 LTR ERVL 1 554 0 251 167 10 98 chr1 94404563 94404618 -187789046 - L1MB2 LINE L1 -2882 4075 4017 207 0 0 0 chr1 94404619 94404642 -187789022 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 5963 157 5 29 chr1 94404643 94405463 -187788201 - L1PA16 LINE L1 -26 6140 5302 1636 192 7 3 chr1 94405463 94405754 -187787910 - AluJo SINE Alu -20 292 1 5963 157 5 29 chr1 94405754 94406213 -187787451 - L1PA16 LINE L1 -864 5302 4834 1948 125 7 0 chr1 94406213 94406501 -187787163 - AluSx SINE Alu -9 303 14 5963 157 5 29 chr1 94406501 94407082 -187786582 - L1PA16 LINE L1 -1332 4834 4321 2660 248 68 28 chr1 94407089 94407717 -187785947 - L1MB2 LINE L1 -2947 4010 3409 2318 64 3 10 chr1 94407717 94408015 -187785649 - AluY SINE Alu -15 296 1 2660 248 68 28 chr1 94408015 94409073 -187784591 - L1MB2 LINE L1 -3548 3409 2265 1020 172 0 22 chr1 94409073 94409253 -187784411 + AluJo SINE Alu 81 256 -56 2723 196 47 49 chr1 94409802 94410459 -187783205 + LTR8A LTR ERV1 34 689 -38 23 0 0 0 chr1 94410947 94410970 -187782694 + AT_rich Low_complexity Low_complexity 1 23 0 294 128 0 0 chr1 94411472 94411519 -187782145 + L1MA3 LINE L1 6259 6305 0 24 0 0 0 chr1 94411805 94411829 -187781835 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr1 94412474 94412517 -187781147 + AT_rich Low_complexity Low_complexity 1 43 0 456 203 106 111 chr1 94413414 94413475 -187780189 + MER112 DNA MER1_type 7 67 -193 372 22 0 0 chr1 94413475 94413520 -187780144 + (CA)n Simple_repeat Simple_repeat 2 46 0 456 203 106 111 chr1 94413520 94413675 -187779989 + MER112 DNA MER1_type 67 222 -38 409 188 167 0 chr1 94413953 94414049 -187779615 + MIR SINE MIR 90 201 -61 398 200 183 8 chr1 94414081 94414196 -187779468 + MIR SINE MIR 81 216 -46 742 219 69 0 chr1 94414196 94414356 -187779308 + MER5B DNA MER1_type 1 171 -7 239 295 0 0 chr1 94414446 94414507 -187779157 - MIR SINE MIR -4 258 198 1034 221 4 38 chr1 94415515 94415778 -187777886 - L1ME3 LINE L1 -8 6154 5901 * 5935 170 41 10 chr1 94415766 94417613 -187776051 + L1MC1 LINE L1 4429 6331 -2 990 236 33 8 chr1 94418621 94418863 -187774801 + LTR16C LTR ERVL 242 489 -2 235 317 67 0 chr1 94418943 94419047 -187774617 + L2 LINE L2 2283 2393 -921 490 285 52 31 chr1 94419709 94419997 -187773667 - L1ME3 LINE L1 -264 5857 5564 199 194 0 0 chr1 94420544 94420580 -187773084 - L2 LINE L2 -5 3308 3273 429 245 51 51 chr1 94421430 94421737 -187771927 - L1MB2 LINE L1 -6228 627 91 184 339 152 30 chr1 94421862 94422027 -187771637 - MIR3 SINE MIR -7 201 17 284 260 208 0 chr1 94422162 94422239 -187771425 + MER5A DNA MER1_type 97 189 0 1451 235 58 7 chr1 94422328 94422740 -187770924 - HsTC2 DNA Tc2 -7 1891 1283 1951 183 67 22 chr1 94423108 94423559 -187770105 - MLT2D LTR ERVL 0 464 1 31 0 0 0 chr1 94423768 94423799 -187769865 + AT_rich Low_complexity Low_complexity 1 31 0 2017 144 29 29 chr1 94424001 94424375 -187769289 - THE1C LTR MaLR -1 374 1 23 0 0 0 chr1 94425751 94425774 -187767890 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 94425983 94426011 -187767653 + AT_rich Low_complexity Low_complexity 1 28 0 1055 317 52 17 chr1 94426102 94426522 -187767142 - MLT1K LTR MaLR -151 437 3 577 254 94 62 chr1 94426603 94427027 -187766637 - MLT1J LTR MaLR -2 613 2 250 379 0 21 chr1 94427200 94427345 -187766319 - L2 LINE L2 -829 2485 2344 21 36 0 0 chr1 94428299 94428327 -187765337 + AT_rich Low_complexity Low_complexity 1 28 0 441 306 165 33 chr1 94428958 94429321 -187764343 + L2 LINE L2 2348 2758 -556 29 70 0 0 chr1 94429617 94429674 -187763990 + AT_rich Low_complexity Low_complexity 1 57 0 833 142 61 7 chr1 94430271 94430419 -187763245 - MER5A DNA MER1_type 0 189 34 519 195 237 0 chr1 94430615 94430760 -187762904 + MER5A DNA MER1_type 4 188 -1 279 221 135 10 chr1 94431344 94431448 -187762216 + MIR SINE MIR 139 255 -7 1012 170 0 22 chr1 94431578 94431760 -187761904 - MLT1A2 LTR MaLR 0 374 197 373 208 108 33 chr1 94431925 94432045 -187761619 + MIR SINE MIR 67 195 -67 26 50 0 0 chr1 94432110 94432150 -187761514 + AT_rich Low_complexity Low_complexity 1 40 0 2407 80 0 7 chr1 94432823 94433125 -187760539 + AluSp SINE Alu 1 300 -13 1360 173 17 13 chr1 94433128 94433250 -187760414 + AluJo SINE Alu 1 126 -186 273 29 0 0 chr1 94433250 94433284 -187760380 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1360 173 17 13 chr1 94433284 94433398 -187760266 + AluJo SINE Alu 126 238 -74 25 75 0 0 chr1 94433402 94433455 -187760209 + AT_rich Low_complexity Low_complexity 1 53 0 1485 160 76 14 chr1 94433549 94433824 -187759840 - AluJb SINE Alu -20 292 1 1438 196 26 71 chr1 94433847 94434229 -187759435 - MLT1A1 LTR MaLR 0 365 1 328 226 71 0 chr1 94434231 94434315 -187759349 - L2 LINE L2 -7 3306 3217 730 144 138 31 chr1 94434841 94435001 -187758663 - MER5B DNA MER1_type -1 177 1 375 339 98 0 chr1 94435785 94435968 -187757696 + MIR SINE MIR 49 249 -13 353 217 203 0 chr1 94436750 94436888 -187756776 + MIR SINE MIR 97 262 0 23 33 0 0 chr1 94437421 94437451 -187756213 + AT_rich Low_complexity Low_complexity 1 30 0 2378 68 14 0 chr1 94438187 94438483 -187755181 - AluY SINE Alu -11 300 1 2174 107 7 19 chr1 94439924 94440234 -187753430 + AluSc SINE Alu 1 306 -3 544 266 75 16 chr1 94441030 94441218 -187752446 - MIR3 SINE MIR -7 201 3 336 24 0 0 chr1 94441334 94441375 -187752289 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 203 85 0 chr1 94441388 94441447 -187752217 - MIR SINE MIR -17 245 182 486 219 41 41 chr1 94442016 94442139 -187751525 + L2 LINE L2 3190 3312 -1 25 0 0 0 chr1 94442446 94442471 -187751193 + AT_rich Low_complexity Low_complexity 1 25 0 724 113 43 0 chr1 94442969 94443084 -187750580 + Tigger3(Golem) DNA MER2_type 165 284 -2745 2331 59 7 0 chr1 94443199 94443487 -187750177 + AluY SINE Alu 1 290 -21 39 80 0 0 chr1 94443758 94443846 -187749818 + AT_rich Low_complexity Low_complexity 1 88 0 1620 239 81 21 chr1 94443974 94444813 -187748851 - L1M4 LINE L1 -3542 3102 2197 2041 115 0 30 chr1 94444820 94445124 -187748540 - AluSx SINE Alu -17 295 1 6137 213 76 33 chr1 94445163 94446791 -187746873 - L1M4 LINE L1 -4831 1711 13 181 263 71 30 chr1 94447468 94447567 -187746097 - L2 LINE L2 -268 3045 2943 706 317 77 73 chr1 94448150 94449261 -187744403 - L2 LINE L2 -7 3265 2168 190 313 205 9 chr1 94449374 94449486 -187744178 + MIR SINE MIR 18 151 -57 238 211 18 0 chr1 94449624 94449681 -187743983 + L1ME4a LINE L1 5963 6020 -101 379 215 65 28 chr1 94450385 94450492 -187743172 + L2 LINE L2 3202 3312 -1 1656 154 33 77 chr1 94451844 94452047 -187741617 - MER7A DNA MER2_type -2692 346 166 2225 98 7 7 chr1 94452047 94452344 -187741320 + AluSx SINE Alu 1 297 -15 1656 154 33 77 chr1 94452344 94452503 -187741161 - MER7A DNA MER2_type -2872 166 2 407 296 69 78 chr1 94452555 94452890 -187740774 - MER102b DNA MER1_type 0 341 10 21 36 0 0 chr1 94453828 94453856 -187739808 + AT_rich Low_complexity Low_complexity 1 28 0 451 295 148 0 chr1 94454647 94454830 -187738834 - MIR SINE MIR -36 226 17 465 265 301 18 chr1 94455306 94455699 -187737965 - L2 LINE L2 -19 3294 2793 219 243 68 87 chr1 94456644 94456747 -187736917 - L3 LINE CR1 -26 1551 1451 186 167 0 0 chr1 94456970 94457006 -187736658 + (TG)n Simple_repeat Simple_repeat 1 36 0 227 288 150 0 chr1 94457899 94457979 -187735685 - L2 LINE L2 -31 3241 3150 24 0 0 0 chr1 94458309 94458333 -187735331 + AT_rich Low_complexity Low_complexity 1 24 0 271 291 122 34 chr1 94459182 94459502 -187734162 + L1ME4a LINE L1 5769 6116 -5 21 57 0 0 chr1 94459894 94459929 -187733735 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr1 94460512 94460540 -187733124 + AT_rich Low_complexity Low_complexity 1 28 0 238 300 30 50 chr1 94460744 94460844 -187732820 - MIR3 SINE MIR -1 207 110 235 279 0 0 chr1 94461043 94461104 -187732560 + L3 LINE CR1 1237 1297 -280 219 298 0 0 chr1 94461144 94461191 -187732473 + L3 LINE CR1 1425 1471 -106 203 299 75 0 chr1 94461180 94461247 -187732417 + L3b LINE CR1 1511 1582 -1 * 192 314 98 20 chr1 94462275 94462377 -187731287 + L2 LINE L2 3179 3288 -25 219 69 0 0 chr1 94462790 94462819 -187730845 + (TTAAA)n Simple_repeat Simple_repeat 4 32 0 239 255 0 0 chr1 94463225 94463272 -187730392 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 2089 83 48 17 chr1 94463430 94463720 -187729944 - AluSq SINE Alu -14 299 1 204 377 113 9 chr1 94463749 94463855 -187729809 - L2 LINE L2 -52 3220 3104 201 372 0 0 chr1 94463861 94463939 -187729725 + L2 LINE L2 2392 2469 -845 218 262 131 0 chr1 94464113 94464174 -187729490 - L2 LINE L2 -6 3266 3198 440 278 136 70 chr1 94464180 94464511 -187729153 - L2 LINE L2 -853 2461 2109 2207 139 14 26 chr1 94464804 94465222 -187728442 - L1MB3 LINE L1 0 6183 5771 225 288 83 45 chr1 94465359 94465491 -187728173 + L2 LINE L2 3163 3299 -14 322 254 14 42 chr1 94466132 94466274 -187727390 + T-rich Low_complexity Low_complexity 2 139 0 332 395 31 17 chr1 94466519 94466810 -187726854 + L2 LINE L2 2437 2731 -583 206 31 0 31 chr1 94467324 94467356 -187726308 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 227 344 61 37 chr1 94467777 94467940 -187725724 - MIR SINE MIR -75 187 21 220 278 102 73 chr1 94469138 94469343 -187724321 + L2 LINE L2 69 279 -3035 324 0 0 0 chr1 94470266 94470302 -187723362 + (CA)n Simple_repeat Simple_repeat 2 37 0 468 270 116 43 chr1 94470363 94470641 -187723023 - MLT1H1 LTR MaLR -65 530 187 437 224 75 40 chr1 94470749 94470923 -187722741 - L1MCc LINE L1 -6227 196 17 22 35 0 0 chr1 94470977 94471006 -187722658 + AT_rich Low_complexity Low_complexity 1 29 0 1747 156 7 39 chr1 94472445 94472752 -187720912 - AluJo SINE Alu -13 299 3 7541 26 3 0 chr1 94472910 94474361 -187719303 - L1PA4 LINE L1 -2 6153 4700 290 368 45 64 chr1 94474439 94474705 -187718959 + L2 LINE L2 3004 3264 -8 2424 82 0 0 chr1 94474932 94475237 -187718427 + AluSc SINE Alu 1 305 -4 194 407 9 0 chr1 94475247 94475355 -187718309 - L2 LINE L2 -337 2976 2868 238 230 54 54 chr1 94475611 94475685 -187717979 - L2 LINE L2 -317 2996 2923 25 0 0 0 chr1 94477396 94477421 -187716243 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr1 94477543 94477567 -187716097 + AT_rich Low_complexity Low_complexity 1 24 0 296 64 21 0 chr1 94477700 94477747 -187715917 + (CA)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr1 94477865 94477893 -187715771 + AT_rich Low_complexity Low_complexity 1 28 0 202 308 125 25 chr1 94478492 94478612 -187715052 + MIR3 SINE MIR 34 165 -43 251 250 22 11 chr1 94478962 94479054 -187714610 + CT-rich Low_complexity Low_complexity 3 95 0 225 94 0 0 chr1 94479513 94479545 -187714119 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr1 94479946 94479977 -187713687 + AT_rich Low_complexity Low_complexity 1 31 0 228 67 0 0 chr1 94480273 94480303 -187713361 + (A)n Simple_repeat Simple_repeat 1 30 0 533 251 150 44 chr1 94481377 94481604 -187712060 + MIR SINE MIR 6 256 -6 21 0 0 0 chr1 94483285 94483306 -187710358 + AT_rich Low_complexity Low_complexity 1 21 0 40 42 0 53 chr1 94483943 94484038 -187709626 + AT_rich Low_complexity Low_complexity 1 90 0 25 51 0 0 chr1 94484258 94484297 -187709367 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr1 94484592 94484626 -187709038 + AT_rich Low_complexity Low_complexity 1 34 0 1983 148 0 0 chr1 94484914 94485197 -187708467 - AluSx SINE Alu -18 294 12 1924 262 243 45 chr1 94485584 94485751 -187707913 - L2 LINE L2 0 3313 3180 1999 131 8 50 chr1 94485751 94486110 -187707554 - MER2 DNA MER2_type 0 344 1 1924 262 243 45 chr1 94486110 94487597 -187706067 - L2 LINE L2 -133 3180 1286 248 304 25 13 chr1 94487815 94487894 -187705770 - L2 LINE L2 0 3272 3193 387 332 39 0 chr1 94488109 94488317 -187705347 + L1ME LINE L1 4861 5076 -1070 461 302 65 42 chr1 94488520 94488898 -187704766 + L1ME LINE L1 5311 5708 -413 21 0 0 0 chr1 94490654 94490675 -187702989 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr1 94490803 94490841 -187702823 + AT_rich Low_complexity Low_complexity 1 38 0 1037 311 47 40 chr1 94491633 94492080 -187701584 - LTR16B LTR ERVL -14 450 1 219 273 15 45 chr1 94492100 94492166 -187701498 - L2 LINE L2 -5 3267 3204 327 232 14 0 chr1 94492206 94492275 -187701389 - L2 LINE L2 -2 3311 3242 426 159 0 0 chr1 94493150 94493219 -187700445 + MIR SINE MIR 79 147 -115 318 230 97 9 chr1 94493282 94493395 -187700269 + MER46C DNA MER2_type 79 201 -137 570 130 0 30 chr1 94493433 94493533 -187700131 + MIR SINE MIR 151 247 -15 290 316 98 23 chr1 94493780 94493913 -187699751 - L2 LINE L2 -220 3052 2910 225 255 0 0 chr1 94494368 94494419 -187699245 + L2 LINE L2 3211 3261 -11 252 86 0 0 chr1 94495859 94495894 -187697770 + (TCTCC)n Simple_repeat Simple_repeat 2 36 0 * 549 149 8 16 chr1 94495891 94496012 -187697652 + CT-rich Low_complexity Low_complexity 2 121 0 481 351 0 0 chr1 94496012 94496183 -187697481 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 351 238 7 20 chr1 94496254 94496550 -187697114 + (TATATG)n Simple_repeat Simple_repeat 1 292 0 337 237 0 62 chr1 94496554 94496651 -187697013 - L1MC4 LINE L1 -1339 6703 6613 353 225 45 22 chr1 94496672 94496761 -187696903 - L1MC4 LINE L1 -1339 6703 6613 231 146 0 0 chr1 94496762 94496803 -187696861 + (TA)n Simple_repeat Simple_repeat 2 42 0 1809 172 0 3 chr1 94496871 94497162 -187696502 + AluJb SINE Alu 1 290 -22 745 252 92 40 chr1 94497298 94497647 -187696017 - L1ME LINE L1 -375 5789 5423 524 292 78 49 chr1 94497655 94498231 -187695433 - L1ME LINE L1 -763 5383 4791 881 204 0 33 chr1 94498273 94498454 -187695210 - AluJo SINE Alu -75 237 63 870 203 138 5 chr1 94499337 94499554 -187694110 - MIR SINE MIR -1 261 16 2915 71 0 11 chr1 94499609 94499988 -187693676 + THE1C LTR MaLR 1 375 0 620 317 83 0 chr1 94501054 94501294 -187692370 - MIR SINE MIR -1 261 2 23 0 0 0 chr1 94503470 94503493 -187690171 + AT_rich Low_complexity Low_complexity 1 23 0 194 61 0 30 chr1 94504106 94504139 -187689525 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2004 30 0 0 chr1 94504139 94504371 -187689293 - L1PA3 LINE L1 -24 6131 5900 339 85 0 0 chr1 94504829 94504876 -187688788 + (TC)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr1 94504945 94504969 -187688695 + (CA)n Simple_repeat Simple_repeat 2 25 0 982 157 6 13 chr1 94505448 94505607 -187688057 + FAM SINE Alu 1 158 -17 189 154 0 0 chr1 94505611 94505650 -187688014 + (CA)n Simple_repeat Simple_repeat 1 39 0 218 87 65 0 chr1 94506710 94506756 -187686908 + (TTA)n Simple_repeat Simple_repeat 1 49 0 7664 20 6 0 chr1 94506756 94508326 -187685338 - L1PA3 LINE L1 -3 6152 4578 25 0 0 0 chr1 94508750 94508775 -187684889 + AT_rich Low_complexity Low_complexity 1 25 0 2327 116 0 0 chr1 94509416 94509768 -187683896 + AluSq SINE Alu 1 352 0 207 0 0 0 chr1 94511138 94511161 -187682503 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr1 94511494 94511515 -187682149 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 94512742 94512773 -187680891 + AT_rich Low_complexity Low_complexity 1 31 0 360 0 0 0 chr1 94513699 94513739 -187679925 + (CA)n Simple_repeat Simple_repeat 2 41 0 28 61 0 0 chr1 94514256 94514305 -187679359 + AT_rich Low_complexity Low_complexity 1 49 0 45 62 0 0 chr1 94514386 94514466 -187679198 + AT_rich Low_complexity Low_complexity 1 80 0 347 276 46 7 chr1 94514629 94514781 -187678883 + MER103 DNA DNA 5 162 -4 24 53 0 0 chr1 94516656 94516694 -187676970 + AT_rich Low_complexity Low_complexity 1 38 0 308 300 107 101 chr1 94517542 94518139 -187675525 - L1M2 LINE L1 -5709 1140 540 270 310 103 35 chr1 94518423 94518539 -187675125 - L2 LINE L2 -8 3305 3182 760 274 17 0 chr1 94518883 94519062 -187674602 + MIR SINE MIR 4 185 -77 22 56 0 0 chr1 94519666 94519702 -187673962 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 94520612 94520633 -187673031 + AT_rich Low_complexity Low_complexity 1 21 0 732 261 6 0 chr1 94520650 94520815 -187672849 + MER63A DNA MER1_type 45 210 0 341 43 21 0 chr1 94522707 94522754 -187670910 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 267 308 0 0 chr1 94522949 94523014 -187670650 - L2 LINE L2 -4 3309 3245 799 274 107 116 chr1 94523033 94524199 -187669465 - L2 LINE L2 -340 2974 1819 247 319 50 25 chr1 94524290 94524409 -187669255 + MIR SINE MIR 21 142 -120 180 400 29 9 chr1 94524619 94524724 -187668940 + L2 LINE L2 3133 3239 -33 2212 120 0 0 chr1 94525438 94525747 -187667917 - AluY SINE Alu -2 309 1 295 316 133 0 chr1 94526388 94526486 -187667178 + L2 LINE L2 3153 3263 -9 369 0 0 0 chr1 94528387 94528428 -187665236 + (TG)n Simple_repeat Simple_repeat 1 41 0 216 0 0 0 chr1 94528427 94528451 -187665213 + (CG)n Simple_repeat Simple_repeat 2 25 0 * 180 0 0 0 chr1 94528913 94528933 -187664731 + (TTG)n Simple_repeat Simple_repeat 2 21 0 220 254 202 35 chr1 94530057 94530171 -187663493 - L2 LINE L2 -312 2960 2828 273 172 94 0 chr1 94530181 94530245 -187663419 - L1ME LINE L1 -449 5672 5603 216 308 77 11 chr1 94530480 94530571 -187663093 - L2 LINE L2 -669 2645 2549 222 371 14 14 chr1 94531097 94531167 -187662497 + L2 LINE L2 3117 3186 -86 396 40 0 0 chr1 94531978 94532028 -187661636 + (CA)n Simple_repeat Simple_repeat 2 51 0 222 279 112 43 chr1 94532077 94532264 -187661400 + MIR SINE MIR 46 247 -15 501 289 57 63 chr1 94533242 94533509 -187660155 + L2 LINE L2 1533 1799 -1515 1262 183 36 95 chr1 94533509 94533897 -187659767 - MLT1A1 LTR MaLR 0 365 1 501 289 57 63 chr1 94533897 94533930 -187659734 + L2 LINE L2 1799 1831 -1483 2232 193 118 23 chr1 94534110 94534711 -187658953 - L1ME2 LINE L1 -50 6114 5457 310 269 120 19 chr1 94535751 94535859 -187657805 - L2 LINE L2 0 3272 3154 600 346 109 16 chr1 94535936 94536320 -187657344 + L3 LINE CR1 331 750 -827 568 321 18 45 chr1 94536803 94537133 -187656531 + L3 LINE CR1 1098 1418 -159 241 310 124 35 chr1 94537128 94537273 -187656391 + MER5B DNA MER1_type 18 175 -3 247 283 117 25 chr1 94537131 94537251 -187656413 - MER5A DNA MER1_type -22 167 37 22 35 0 0 chr1 94538061 94538090 -187655574 + AT_rich Low_complexity Low_complexity 1 29 0 452 273 9 9 chr1 94539463 94539573 -187654091 + MIR SINE MIR 48 157 -105 216 130 0 0 chr1 94541633 94541679 -187651985 + (T)n Simple_repeat Simple_repeat 1 46 0 285 275 245 30 chr1 94542063 94542332 -187651332 - L3b LINE CR1 -69 1514 1188 388 294 190 0 chr1 94543191 94543398 -187650266 - MIR SINE MIR 0 262 17 22 0 0 0 chr1 94543707 94543729 -187649935 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 94544251 94544274 -187649390 + AT_rich Low_complexity Low_complexity 1 23 0 2192 173 27 12 chr1 94545162 94545747 -187647917 + L1MB5 LINE L1 5094 5687 -487 862 129 153 0 chr1 94545746 94545909 -187647755 + L1PB4 LINE L1 5962 6149 -7 * 2303 176 48 0 chr1 94545909 94546386 -187647278 + L1MB5 LINE L1 5675 6174 0 743 170 205 0 chr1 94546808 94546979 -187646685 + LOR1a LTR ERV1 81 286 -211 572 211 94 18 chr1 94546976 94547147 -187646517 + LOR1b LTR ERV1 278 461 0 * 600 265 15 59 chr1 94547257 94547461 -187646203 - MIR SINE MIR -67 195 1 447 306 117 65 chr1 94548596 94549268 -187644396 - L2 LINE L2 -1 3271 2569 339 262 84 54 chr1 94549276 94549574 -187644090 - L2 LINE L2 -1005 2309 2003 216 263 18 0 chr1 94549635 94549692 -187643972 - L2 LINE L2 0 3272 3215 228 348 93 25 chr1 94550401 94550519 -187643145 - L2 LINE L2 -2 3270 3145 660 288 122 9 chr1 94551299 94551521 -187642143 + MIR SINE MIR 2 248 -14 223 328 31 31 chr1 94551605 94551733 -187641931 + MIR SINE MIR 79 206 -56 1997 133 4 0 chr1 94551752 94552062 -187641602 + AluSx SINE Alu 4 314 0 7333 44 1 0 chr1 94552312 94553889 -187639775 + L1PA5 LINE L1 4577 6154 0 818 256 30 52 chr1 94553996 94554301 -187639363 - L2 LINE L2 0 3313 3016 330 361 79 32 chr1 94554448 94554725 -187638939 + L2 LINE L2 2608 2897 -417 256 253 53 106 chr1 94555113 94555283 -187638381 + MIR SINE MIR 92 252 -10 2869 147 3 62 chr1 94555461 94556038 -187637626 - L1MC1 LINE L1 0 6333 5791 950 253 63 22 chr1 94556059 94556492 -187637172 + MER74A LTR ERVL 3 524 -34 2858 152 29 6 chr1 94556520 94557087 -187636577 - L1MC1 LINE L1 -548 5796 5219 208 278 122 22 chr1 94557263 94557353 -187636311 - L2 LINE L2 -2 3311 3213 2405 180 24 2 chr1 94557794 94558217 -187635447 - MSTB1 LTR MaLR 0 432 1 7963 209 24 5 chr1 94558230 94559837 -187633827 - MSTB1-int LTR MaLR -14 1637 1 2343 137 19 31 chr1 94559847 94559909 -187633755 - MSTB1 LTR MaLR -13 419 358 1568 134 56 106 chr1 94559909 94560304 -187633360 + THE1C LTR MaLR 1 375 0 2343 137 19 31 chr1 94560304 94560665 -187632999 - MSTB1 LTR MaLR -74 358 1 236 316 0 0 chr1 94560791 94560848 -187632816 - L2 LINE L2 -8 3305 3249 987 260 154 40 chr1 94561308 94561485 -187632179 + L1MC4a LINE L1 6443 6598 -1210 210 37 0 0 chr1 94561485 94561512 -187632152 + (TG)n Simple_repeat Simple_repeat 1 27 0 987 260 154 40 chr1 94561512 94561861 -187631803 + L1MC4a LINE L1 6598 7029 -779 * 1796 228 93 35 chr1 94561833 94562459 -187631205 + L1MC4 LINE L1 7238 7899 -143 193 355 105 17 chr1 94562645 94562817 -187630847 + MIR3 SINE MIR 9 195 -13 241 196 0 20 chr1 94563644 94563695 -187629969 + L2 LINE L2 3263 3312 -1 393 308 39 39 chr1 94564182 94564312 -187629352 + MIR SINE MIR 2 131 -131 861 257 116 45 chr1 94564906 94565441 -187628223 + L2 LINE L2 2666 3263 -50 1568 245 15 0 chr1 94565441 94565780 -187627884 + Tigger7 DNA MER2_type 1 344 -2143 766 158 7 33 chr1 94565776 94565928 -187627736 + Tigger7 DNA MER2_type 2340 2487 0 * 461 267 40 16 chr1 94566421 94566609 -187627055 + MIR SINE MIR 24 214 -48 2025 147 7 0 chr1 94566613 94566906 -187626758 + AluSx SINE Alu 1 295 -17 212 256 0 0 chr1 94567517 94567560 -187626104 + polypyrimidine Low_complexity Low_complexity 3 45 0 622 255 65 10 chr1 94568493 94568693 -187624971 + MIR SINE MIR 3 213 -49 3458 100 16 2 chr1 94568811 94569319 -187624345 - L1PB2 LINE L1 -3 6148 5634 2215 116 7 7 chr1 94569355 94569665 -187623999 - AluSx SINE Alu -2 310 1 244 293 0 0 chr1 94569797 94569855 -187623809 - MER91A DNA MER1_type -1 195 138 584 349 6 17 chr1 94569886 94570058 -187623606 - MER91A DNA MER1_type -25 171 2 982 224 72 48 chr1 94570058 94570440 -187623224 - MLT1J LTR MaLR -11 489 106 611 233 124 48 chr1 94570693 94570903 -187622761 + MIR SINE MIR 2 227 -35 240 35 0 0 chr1 94572944 94572973 -187620691 + (TATG)n Simple_repeat Simple_repeat 2 30 0 22 70 0 0 chr1 94573133 94573176 -187620488 + AT_rich Low_complexity Low_complexity 1 43 0 1747 153 36 11 chr1 94573211 94573492 -187620172 - AluJo SINE Alu -24 288 1 2637 219 18 7 chr1 94573494 94574055 -187619609 + MLT1F1 LTR MaLR 1 567 0 634 293 123 0 chr1 94574198 94574410 -187619254 + MIR SINE MIR 5 242 -20 1645 164 17 34 chr1 94574451 94574749 -187618915 - AluJo SINE Alu -19 293 1 285 275 23 15 chr1 94574764 94574895 -187618769 - L1ME LINE L1 -298 5823 5692 337 267 128 29 chr1 94575239 94575380 -187618284 + MIR SINE MIR 33 184 -68 639 0 0 0 chr1 94576861 94576932 -187616732 + (TTTC)n Simple_repeat Simple_repeat 1 71 0 204 219 0 0 chr1 94577227 94577268 -187616396 + CT-rich Low_complexity Low_complexity 4 44 0 256 372 97 5 chr1 94579833 94580029 -187613635 + L2 LINE L2 2405 2618 -696 261 278 219 20 chr1 94580031 94580182 -187613482 + MER5A DNA MER1_type 9 189 0 2244 92 3 7 chr1 94580303 94580607 -187613057 + AluSp SINE Alu 1 303 -10 181 306 0 0 chr1 94581316 94581365 -187612299 + L2 LINE L2 296 344 -2970 3416 124 43 54 chr1 94581565 94581675 -187611989 + MER4A LTR ERV1 1 111 -489 2356 91 10 0 chr1 94581675 94581973 -187611691 + AluSc SINE Alu 1 301 -8 3416 124 43 54 chr1 94581973 94582469 -187611195 + MER4A LTR ERV1 111 600 0 231 114 0 0 chr1 94583548 94583583 -187610081 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 21 57 0 0 chr1 94583639 94583674 -187609990 + AT_rich Low_complexity Low_complexity 1 35 0 394 20 0 0 chr1 94584739 94584789 -187608875 + MADE1 DNA Mariner 31 80 0 1146 136 52 195 chr1 94585380 94585786 -187607878 - MER7A DNA MER2_type 0 346 1 242 323 0 0 chr1 94587567 94587629 -187606035 - MLT1K LTR MaLR -343 245 184 513 287 34 48 chr1 94588117 94588336 -187605328 + MIR SINE MIR 2 210 -52 2589 44 0 25 chr1 94588364 94588681 -187604983 + AluY SINE Alu 1 309 -2 234 348 51 42 chr1 94588782 94588900 -187604764 + MIR3 SINE MIR 85 203 -5 915 276 19 0 chr1 94589565 94589779 -187603885 - MIR SINE MIR 0 262 45 424 263 50 21 chr1 94589827 94590006 -187603658 - MIR SINE MIR -7 255 5 456 324 86 12 chr1 94590042 94590286 -187603378 - MIR SINE MIR 0 262 1 249 188 0 21 chr1 94590374 94590422 -187603242 - L2 LINE L2 0 3313 3267 26 0 0 0 chr1 94591338 94591364 -187602300 + AT_rich Low_complexity Low_complexity 1 26 0 4273 255 77 30 chr1 94591364 94592321 -187601343 - L1ME2 LINE L1 0 6164 5254 2172 84 11 3 chr1 94592321 94592608 -187601056 - AluSc SINE Alu -20 289 1 4273 255 77 30 chr1 94592608 94594255 -187599409 - L1ME2 LINE L1 -910 5254 3404 1986 226 91 24 chr1 94594255 94594807 -187598857 - MLT1E LTR MaLR -2 591 3 4273 255 77 30 chr1 94594807 94595163 -187598501 - L1ME2 LINE L1 -2760 3404 3066 442 235 76 0 chr1 94595163 94595282 -187598382 - MER69 DNA AcHobo -2397 129 2 847 243 184 15 chr1 94595287 94595629 -187598035 + HsTC2 DNA Tc2 4 403 -1495 264 247 100 7 chr1 94595625 94595822 -187597842 + HsTC2 DNA Tc2 1662 1900 0 * 584 246 103 11 chr1 94595823 94595998 -187597666 - MIR SINE MIR -67 195 5 392 221 115 0 chr1 94596266 94596379 -187597285 - MER94 DNA DNA -8 126 1 2534 179 79 21 chr1 94596433 94596964 -187596700 + MER68 LTR ERV1 1 562 0 198 0 0 0 chr1 94597707 94597729 -187595935 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 946 183 82 10 chr1 94603526 94603734 -187589930 + MER58A DNA MER1_type 1 223 -1 260 316 76 0 chr1 94603962 94604041 -187589623 - L2 LINE L2 0 3272 3188 356 234 160 0 chr1 94604324 94604418 -187589246 + MIR SINE MIR 61 169 -93 182 116 0 93 chr1 94604563 94604606 -187589058 - L2 LINE L2 0 3313 3275 485 278 78 16 chr1 94604617 94604808 -187588856 + MIR SINE MIR 60 262 0 240 309 49 41 chr1 94606263 94606386 -187587278 - MIR SINE MIR -61 147 24 181 339 34 0 chr1 94606747 94606806 -187586858 - L3 LINE CR1 -919 658 598 228 135 0 0 chr1 94606910 94606947 -187586717 + (TG)n Simple_repeat Simple_repeat 2 38 0 231 61 0 0 chr1 94607636 94607669 -187585995 + (A)n Simple_repeat Simple_repeat 1 33 0 24 32 0 0 chr1 94607851 94607882 -187585782 + AT_rich Low_complexity Low_complexity 1 31 0 220 255 137 0 chr1 94609988 94610039 -187583625 + MER91A DNA MER1_type 95 152 -44 796 263 49 12 chr1 94610415 94610658 -187583006 + MIR SINE MIR 9 260 -2 327 25 0 0 chr1 94612524 94612564 -187581100 + (TG)n Simple_repeat Simple_repeat 1 40 0 261 0 0 0 chr1 94613222 94613251 -187580413 + (CAAAA)n Simple_repeat Simple_repeat 4 32 0 416 238 185 7 chr1 94615277 94615428 -187578236 + MIR SINE MIR 42 219 -43 23 0 0 0 chr1 94616864 94616887 -187576777 + AT_rich Low_complexity Low_complexity 1 23 0 2169 174 100 23 chr1 94620338 94620381 -187573283 - MLT2B2 LTR ERVL 0 515 477 524 29 29 0 chr1 94620381 94620450 -187573214 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2169 174 100 23 chr1 94620450 94620884 -187572780 - MLT2B2 LTR ERVL -38 477 1 217 332 98 38 chr1 94621053 94621288 -187572376 - L2 LINE L2 -338 2976 2728 274 267 163 18 chr1 94621585 94621806 -187571858 - MLT1L LTR MaLR -171 444 192 326 324 88 7 chr1 94623001 94623137 -187570527 + L2 LINE L2 3116 3262 -10 410 316 114 28 chr1 94623848 94624244 -187569420 + MLT1K LTR MaLR 145 574 -14 180 327 0 18 chr1 94624743 94624798 -187568866 + L2 LINE L2 2996 3049 -264 1464 204 40 48 chr1 94626755 94627132 -187566532 + MLT1A2 LTR MaLR 1 374 0 2317 163 26 0 chr1 94629264 94629650 -187564014 + MSTD LTR MaLR 1 396 0 213 189 0 0 chr1 94629858 94629895 -187563769 + (CA)n Simple_repeat Simple_repeat 2 38 0 241 355 45 18 chr1 94631422 94631532 -187562132 - L2 LINE L2 0 3272 3160 31 26 0 0 chr1 94632667 94632705 -187560959 + AT_rich Low_complexity Low_complexity 1 38 0 282 222 208 0 chr1 94633761 94633833 -187559831 + L2 LINE L2 3186 3272 0 534 274 134 6 chr1 94634241 94634405 -187559259 - MIR SINE MIR -44 218 34 327 49 0 0 chr1 94637807 94637848 -187555816 + (CA)n Simple_repeat Simple_repeat 2 42 0 904 274 106 50 chr1 94638094 94638741 -187554923 - L2 LINE L2 -23 3290 2588 312 312 99 57 chr1 94638736 94638877 -187554787 + L2 LINE L2 3123 3269 -3 * 6248 53 13 13 chr1 94639086 94639866 -187553798 + LTR17 LTR ERV1 1 780 0 182 264 56 56 chr1 94640412 94640484 -187553180 + MIR SINE MIR 186 257 -5 367 305 8 34 chr1 94640492 94640610 -187553054 - MIR SINE MIR -128 134 20 286 235 35 0 chr1 94640768 94640853 -187552811 + (TA)n Simple_repeat Simple_repeat 2 89 0 1696 166 10 80 chr1 94640867 94640934 -187552730 - MLT1B LTR MaLR -7 383 313 1917 176 0 3 chr1 94640934 94641247 -187552417 - AluJb SINE Alu 0 312 1 1696 166 10 80 chr1 94641247 94641414 -187552250 - MLT1B LTR MaLR -77 313 188 2316 103 3 0 chr1 94641414 94641716 -187551948 - AluSx SINE Alu -9 303 1 1696 166 10 80 chr1 94641716 94641891 -187551773 - MLT1B LTR MaLR -202 188 2 367 268 103 61 chr1 94642049 94642262 -187551402 + MIR SINE MIR 2 223 -39 1058 253 112 77 chr1 94642602 94643119 -187550545 + MLT1F LTR MaLR 3 537 -5 2076 158 78 2 chr1 94643861 94644259 -187549405 - MSTA LTR MaLR 0 428 1 450 323 135 22 chr1 94644732 94644961 -187548703 - MIR SINE MIR -5 257 3 258 395 54 22 chr1 94645169 94645354 -187548310 + L3 LINE CR1 1385 1575 -2 1167 184 74 4 chr1 94646071 94646327 -187547337 - ORSL DNA AcHobo 0 275 2 369 304 17 149 chr1 94646328 94646799 -187546865 - L2 LINE L2 0 3272 2864 305 231 86 39 chr1 94647182 94647297 -187546367 - MIR3 SINE MIR -21 187 66 875 218 114 107 chr1 94647655 94648095 -187545569 - LTR16A1 LTR ERVL -9 448 6 1088 188 0 10 chr1 94649613 94649805 -187543859 + AluJo SINE Alu 87 276 -36 405 0 0 0 chr1 94649810 94649855 -187543809 + (TAA)n Simple_repeat Simple_repeat 1 45 0 219 340 163 7 chr1 94649936 94650083 -187543581 - L2 LINE L2 -838 2476 2307 259 397 64 6 chr1 94651038 94651194 -187542470 - MIR3 SINE MIR -25 183 19 22 35 0 0 chr1 94651463 94651492 -187542172 + AT_rich Low_complexity Low_complexity 1 29 0 1611 142 39 12 chr1 94651515 94651769 -187541895 + AluSx SINE Alu 37 297 -15 23 0 0 0 chr1 94653544 94653567 -187540097 + AT_rich Low_complexity Low_complexity 1 23 0 2650 283 89 38 chr1 94654104 94657525 -187536139 + L1ME3A LINE L1 2485 6170 0 27 0 0 0 chr1 94657626 94657653 -187536011 + AT_rich Low_complexity Low_complexity 1 27 0 3287 171 37 34 chr1 94657813 94658574 -187535090 + L1MB4 LINE L1 5417 6179 -1 1172 254 0 15 chr1 94659523 94659783 -187533881 + MIR SINE MIR 1 256 -6 2556 58 0 7 chr1 94660604 94660914 -187532750 - AluY SINE Alu -3 308 1 1749 217 51 35 chr1 94661274 94661767 -187531897 + MLT1D LTR MaLR 4 504 -1 22 56 0 0 chr1 94661974 94662010 -187531654 + AT_rich Low_complexity Low_complexity 1 36 0 323 254 19 144 chr1 94662816 94663080 -187530584 - MIR SINE MIR 0 262 32 1381 177 141 128 chr1 94663343 94663890 -187529774 - MLT2B3 LTR ERVL 0 554 1 325 244 191 0 chr1 94663945 94663974 -187529690 - L1MA10 LINE L1 -10 6324 6296 3035 222 43 28 chr1 94663974 94665017 -187528647 - L1ME1 LINE L1 -48 6118 5063 2086 253 27 27 chr1 94665014 94665199 -187528465 + L1M4 LINE L1 3515 3699 -2447 * 2157 97 6 35 chr1 94665199 94665518 -187528146 + AluSx SINE Alu 1 310 -2 2086 253 27 27 chr1 94665518 94665965 -187527699 + L1M4 LINE L1 3698 4147 -1999 1881 214 57 49 chr1 94665976 94666090 -187527574 + L1M4 LINE L1 4379 4491 -1655 2380 82 3 0 chr1 94666090 94666384 -187527280 + AluSx SINE Alu 6 300 -12 1881 214 57 49 chr1 94666384 94666918 -187526746 + L1M4 LINE L1 4491 5032 -1114 528 289 38 33 chr1 94666918 94667312 -187526352 - L1ME1 LINE L1 -3298 2848 2453 279 331 93 43 chr1 94667482 94667859 -187525805 - L2 LINE L2 -191 3081 2689 274 331 61 31 chr1 94667900 94668063 -187525601 + MLT1J LTR MaLR 7 174 -337 216 0 0 0 chr1 94668130 94668154 -187525510 + (T)n Simple_repeat Simple_repeat 1 24 0 406 356 35 10 chr1 94668941 94669143 -187524521 + L1M4 LINE L1 4925 5131 -1015 207 162 0 0 chr1 94669164 94669201 -187524463 + A-rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 94669237 94669260 -187524404 + AT_rich Low_complexity Low_complexity 1 23 0 1061 96 0 0 chr1 94669647 94669793 -187523871 + HERVH LTR ERV1 1 146 -7567 * 2085 140 33 14 chr1 94669785 94670149 -187523515 + HERVH LTR ERV1 1769 2139 -5574 15427 49 65 4 chr1 94670156 94672179 -187521485 + L1P LINE L1 2 2148 -3998 228 293 57 57 chr1 94672285 94672531 -187521133 - L2 LINE L2 -700 2614 2369 23 54 0 0 chr1 94672850 94672887 -187520777 + AT_rich Low_complexity Low_complexity 1 37 0 211 365 71 46 chr1 94673031 94673228 -187520436 + MIR3 SINE MIR 5 206 -2 512 207 138 0 chr1 94675283 94675399 -187518265 - FLAM_A SINE Alu -2 140 9 358 238 59 20 chr1 94676458 94676559 -187517105 - L2 LINE L2 -1 3312 3208 1062 351 141 16 chr1 94677216 94678088 -187515576 + L2 LINE L2 542 1522 -1792 1137 266 61 25 chr1 94678088 94678598 -187515066 - MLT1G3 LTR MaLR 0 595 5 1774 163 0 10 chr1 94679330 94679636 -187514028 - AluJb SINE Alu -1 311 9 1405 253 100 96 chr1 94679929 94681109 -187512555 - L1ME3 LINE L1 -3 6228 5055 207 0 0 0 chr1 94681109 94681132 -187512532 + (TC)n Simple_repeat Simple_repeat 2 24 0 1405 253 100 96 chr1 94681132 94682278 -187511386 - L1ME3 LINE L1 -1176 5055 3818 412 221 185 54 chr1 94682310 94682532 -187511132 - L1ME3 LINE L1 -3230 2985 2735 183 80 0 0 chr1 94682550 94682575 -187511089 + (CA)n Simple_repeat Simple_repeat 1 25 0 1895 160 51 0 chr1 94682683 94683014 -187510650 + MER7A DNA MER2_type 1 346 0 652 308 57 20 chr1 94683154 94683609 -187510055 - L1ME3 LINE L1 -4690 1706 1235 395 272 142 22 chr1 94683628 94683860 -187509804 - L1ME3 LINE L1 -5336 1060 801 2265 247 44 62 chr1 94684612 94685305 -187508359 - L1ME3 LINE L1 -30 6132 5451 2365 155 28 113 chr1 94685305 94685873 -187507791 - MLT2B1 LTR ERVL 0 520 1 2265 247 44 62 chr1 94685873 94686313 -187507351 - L1ME3 LINE L1 -711 5451 5004 1893 262 112 9 chr1 94686322 94686905 -187506759 - L2 LINE L2 -1907 1407 765 21 57 0 0 chr1 94687245 94687280 -187506384 + AT_rich Low_complexity Low_complexity 1 35 0 2079 138 38 24 chr1 94687838 94688208 -187505456 - THE1C LTR MaLR 0 375 1 280 296 148 35 chr1 94688345 94688460 -187505204 - MIR SINE MIR -131 131 4 903 220 106 5 chr1 94688579 94688797 -187504867 - MIR SINE MIR -21 241 2 1758 179 28 43 chr1 94688894 94689285 -187504379 - MLT2C1 LTR ERVL 0 397 13 2090 92 0 59 chr1 94689948 94690253 -187503411 + AluSg SINE Alu 21 307 -3 569 236 99 107 chr1 94690611 94690993 -187502671 + MLT1G-int LTR MaLR 963 1341 -30 507 267 136 15 chr1 94690999 94691245 -187502419 + MLT1G LTR MaLR 1 285 -297 560 248 106 87 chr1 94691386 94691604 -187502060 + MLT1G LTR MaLR 374 590 0 4907 138 48 21 chr1 94691672 94692588 -187501076 - L1MA5 LINE L1 0 6300 5360 457 330 53 84 chr1 94693064 94693515 -187500149 + L2 LINE L2 2836 3272 0 23 0 0 0 chr1 94693751 94693774 -187499890 + AT_rich Low_complexity Low_complexity 1 23 0 747 199 15 0 chr1 94694627 94694763 -187498901 - MER3 DNA MER1_type -70 139 2 674 285 70 25 chr1 94695151 94695393 -187498271 + MIR SINE MIR 8 260 -2 21 36 0 0 chr1 94695656 94695684 -187497980 + AT_rich Low_complexity Low_complexity 1 28 0 212 341 130 8 chr1 94696532 94696655 -187497009 + MIR3 SINE MIR 36 173 -35 2365 85 0 0 chr1 94697435 94697729 -187495935 + AluSq SINE Alu 7 300 -13 210 265 0 0 chr1 94698182 94698250 -187495414 + (CA)n Simple_repeat Simple_repeat 2 69 0 434 299 132 81 chr1 94699158 94699687 -187493977 - L1M2 LINE L1 -5518 1331 776 758 267 47 0 chr1 94700434 94700625 -187493039 - MIR SINE MIR -55 207 8 442 205 8 41 chr1 94701859 94701981 -187491683 - MIR SINE MIR -88 174 57 297 0 0 0 chr1 94702897 94702930 -187490734 + (TA)n Simple_repeat Simple_repeat 2 34 0 182 288 137 34 chr1 94703575 94703721 -187489943 - L2 LINE L2 -5 3308 3148 548 256 48 0 chr1 94703933 94704058 -187489606 + L2 LINE L2 3183 3313 0 476 252 184 48 chr1 94704379 94704629 -187489035 - MLT1K LTR MaLR -7 581 298 229 246 0 0 chr1 94705305 94705366 -187488298 - L1ME4a LINE L1 -65 6056 5996 1928 137 0 7 chr1 94705366 94705701 -187487963 - AluSx SINE Alu 0 333 1 238 323 0 15 chr1 94705722 94705787 -187487877 - MER2 DNA MER2_type -2 343 280 1204 147 37 0 chr1 94705825 94706016 -187487648 - MER2 DNA MER2_type -147 198 1 3845 181 11 1 chr1 94706049 94706782 -187486882 + L1PA13 LINE L1 4105 4844 -1302 748 134 8 15 chr1 94706838 94706972 -187486692 + L1PA15 LINE L1 6024 6156 -9 5219 127 21 19 chr1 94707015 94708331 -187485333 + L1PA13 LINE L1 4846 6163 0 714 249 131 18 chr1 94708355 94708584 -187485080 - MIR SINE MIR -1 261 7 1671 243 88 29 chr1 94708736 94709262 -187484402 - L1ME4a LINE L1 -174 5996 5440 278 208 31 52 chr1 94709259 94709355 -187484309 - L1MC/D LINE L1 -1992 5816 5723 * 21 36 0 0 chr1 94709531 94709559 -187484105 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 94709741 94709770 -187483894 + AT_rich Low_complexity Low_complexity 1 29 0 213 231 0 0 chr1 94709868 94709907 -187483757 + (TATG)n Simple_repeat Simple_repeat 4 42 0 819 189 90 47 chr1 94709937 94710170 -187483494 - MER2 DNA MER2_type 0 345 103 207 167 0 0 chr1 94710180 94710222 -187483442 + (TA)n Simple_repeat Simple_repeat 1 42 0 634 45 56 0 chr1 94711469 94711558 -187482106 + L1PA13 LINE L1 6069 6162 -1 393 196 11 11 chr1 94711562 94711654 -187482010 + L1MC4 LINE L1 7564 7655 -387 2226 118 0 13 chr1 94712046 94712360 -187481304 - AluSx SINE Alu -2 310 1 322 270 124 44 chr1 94712390 94712527 -187481137 + LTR67 LTR ERVL 410 557 0 541 305 87 12 chr1 94712751 94713191 -187480473 + L1ME4a LINE L1 5211 5695 -475 2367 227 79 9 chr1 94713197 94713832 -187479832 + L1MB7 LINE L1 5497 6175 -9 247 289 58 0 chr1 94713961 94714065 -187479599 + L1ME4a LINE L1 5678 5787 -383 10856 172 37 12 chr1 94714296 94715424 -187478240 - L1MA4A LINE L1 -23 6982 5884 2204 117 3 13 chr1 94715424 94715740 -187477924 + AluSp SINE Alu 1 313 0 10856 172 37 12 chr1 94715740 94717763 -187475901 - L1MA4A LINE L1 -1121 5884 3700 1708 304 2 0 chr1 94717764 94718208 -187475456 - L1MA4A LINE L1 -6393 456 12 303 185 9 102 chr1 94718253 94718361 -187475303 + L1ME4a LINE L1 5938 6035 -86 509 267 28 28 chr1 94718760 94718940 -187474724 - MLT1K LTR MaLR -17 571 392 379 302 108 22 chr1 94720108 94720247 -187473417 + HsTC2 DNA Tc2 1 151 -1747 * 1103 232 90 31 chr1 94720240 94720653 -187473011 + HsTC2 DNA Tc2 1288 1900 0 259 182 0 0 chr1 94720742 94720786 -187472878 - MER69 DNA AcHobo -486 2040 1997 1086 205 94 92 chr1 94720886 94721451 -187472213 - MER69 DNA AcHobo -503 2023 1458 1444 228 0 0 chr1 94721455 94721723 -187471941 - MER69 DNA AcHobo -2253 273 6 185 329 13 51 chr1 94722325 94722404 -187471260 - L2 LINE L2 -8 3305 3230 447 234 110 48 chr1 94723609 94723754 -187469910 + MIR SINE MIR 84 237 -25 208 313 16 0 chr1 94724044 94724108 -187469556 - L2 LINE L2 0 3272 3208 1630 251 141 16 chr1 94724958 94725513 -187468151 - MLT1E2 LTR MaLR 0 626 3 877 294 55 39 chr1 94725726 94725844 -187467820 + L2 LINE L2 2272 2387 -927 2145 185 95 90 chr1 94725844 94726665 -187466999 - LTR1B LTR ERV1 -1 825 1 877 294 55 39 chr1 94726665 94726930 -187466734 + L2 LINE L2 2387 2661 -653 1658 108 0 0 chr1 94727949 94728171 -187465493 - AluSq SINE Alu -2 311 90 23 54 0 0 chr1 94728524 94728561 -187465103 + AT_rich Low_complexity Low_complexity 1 37 0 854 201 60 15 chr1 94728758 94728957 -187464707 + MER3 DNA MER1_type 1 208 -1 478 316 7 70 chr1 94729576 94729877 -187463787 + L1MC3 LINE L1 1 282 -6258 2248 75 34 0 chr1 94729878 94730171 -187463493 + AluY SINE Alu 9 311 0 621 238 98 52 chr1 94730321 94730687 -187462977 + L1MC3 LINE L1 1333 1715 -4825 * 775 240 121 60 chr1 94730675 94731026 -187462638 + L1MC3 LINE L1 1947 2340 -4200 1897 109 49 3 chr1 94731026 94731310 -187462354 + AluSp SINE Alu 1 297 -16 775 240 121 60 chr1 94731310 94731470 -187462194 + L1MC3 LINE L1 2340 2489 -4051 3905 224 37 28 chr1 94731485 94733449 -187460215 + L1MC3 LINE L1 1 2133 -4431 231 276 0 0 chr1 94733538 94733596 -187460068 + (CTTTG)n Simple_repeat Simple_repeat 4 61 0 2226 210 80 65 chr1 94733617 94734351 -187459313 - LTR1B LTR ERV1 -81 745 1 1229 212 96 0 chr1 94734360 94734754 -187458910 + L1MC3 LINE L1 2195 2625 -3939 343 208 52 10 chr1 94734844 94734940 -187458724 - L1MCa LINE L1 -4425 2001 1902 3783 242 52 27 chr1 94734957 94736266 -187457398 + L1MC3 LINE L1 2635 3976 -2588 * 7544 165 75 37 chr1 94736252 94736443 -187457221 + L1MC3 LINE L1 5682 5864 -2339 264 30 0 0 chr1 94736443 94736476 -187457188 + (CA)n Simple_repeat Simple_repeat 1 33 0 7544 165 75 37 chr1 94736476 94736776 -187456888 + L1MC3 LINE L1 5864 6151 -2052 1955 158 24 19 chr1 94736776 94737149 -187456515 + THE1C LTR MaLR 1 375 0 7544 165 75 37 chr1 94737149 94738301 -187455363 + L1MC3 LINE L1 6151 7389 -814 4863 237 55 29 chr1 94738298 94739321 -187454343 + L1MC3 LINE L1 3706 4700 -1840 * 457 139 13 0 chr1 94739321 94739400 -187454264 - MADE1 DNA Mariner 0 80 1 4863 237 55 29 chr1 94739400 94739729 -187453935 + L1MC3 LINE L1 4700 5107 -1433 2234 109 0 7 chr1 94739729 94740033 -187453631 + AluY SINE Alu 1 302 -9 4863 237 55 29 chr1 94740033 94740224 -187453440 + L1MC3 LINE L1 5107 5291 -1249 690 189 51 25 chr1 94740206 94740402 -187453262 + L1MC3 LINE L1 6145 6345 -1834 * 258 160 181 75 chr1 94740805 94740899 -187452765 + MIR SINE MIR 81 184 -78 289 239 14 14 chr1 94742233 94742304 -187451360 - L2 LINE L2 -210 3062 2992 210 321 38 0 chr1 94742397 94742450 -187451214 - L2 LINE L2 -13 3259 3205 204 125 0 0 chr1 94742936 94742968 -187450696 + (TTCCC)n Simple_repeat Simple_repeat 5 36 0 1889 125 3 20 chr1 94743116 94743411 -187450253 + AluSx SINE Alu 1 290 -22 21 36 0 0 chr1 94745047 94745075 -187448589 + AT_rich Low_complexity Low_complexity 1 28 0 214 204 21 32 chr1 94748272 94748365 -187445299 + (TTATA)n Simple_repeat Simple_repeat 4 95 0 181 310 84 14 chr1 94748394 94748465 -187445199 + L2 LINE L2 3137 3212 -60 599 200 168 7 chr1 94748878 94749033 -187444631 + MER5A DNA MER1_type 9 188 -1 318 240 116 0 chr1 94749069 94749198 -187444466 - L1ME4a LINE L1 -24 6097 5954 1869 163 0 3 chr1 94749219 94749513 -187444151 - AluJb SINE Alu -19 293 1 542 213 128 5 chr1 94749596 94749784 -187443880 - L1ME4a LINE L1 -320 5801 5591 25 0 0 0 chr1 94749830 94749855 -187443809 + AT_rich Low_complexity Low_complexity 1 25 0 1914 119 0 44 chr1 94749935 94750258 -187443406 + AluSx SINE Alu 1 310 0 26 0 0 0 chr1 94750305 94750331 -187443333 + AT_rich Low_complexity Low_complexity 1 26 0 2308 146 35 22 chr1 94750385 94750788 -187442876 + MSTB LTR MaLR 14 421 -5 4551 192 48 43 chr1 94750889 94751114 -187442550 - L1MA9 LINE L1 -6 6306 6084 14716 121 40 5 chr1 94751114 94753450 -187440214 - Tigger1 DNA MER2_type -1 2417 1 4551 192 48 43 chr1 94753450 94754382 -187439282 - L1MA9 LINE L1 -228 6084 5144 * 5125 193 67 11 chr1 94754381 94755045 -187438619 + L1 LINE L1 3455 4215 -1931 180 0 0 0 chr1 94755045 94755065 -187438599 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 5125 193 67 11 chr1 94755065 94755580 -187438084 + L1 LINE L1 4215 4700 -1446 1623 171 3 24 chr1 94755997 94756284 -187437380 - AluJo SINE Alu -17 295 15 579 301 65 80 chr1 94756619 94756955 -187436709 + MER102b DNA MER1_type 1 331 -10 7575 260 80 26 chr1 94757403 94758078 -187435586 - L1MB8 LINE L1 -15 6974 6337 1505 135 150 0 chr1 94758078 94758338 -187435326 - AluSx SINE Alu 0 302 4 7575 260 80 26 chr1 94758338 94763028 -187430636 - L1MB8 LINE L1 -652 6337 1188 232 327 160 7 chr1 94763084 94763234 -187430430 - L1MB8 LINE L1 -5654 1201 1029 411 291 83 22 chr1 94763540 94763802 -187429862 - L1MB8 LINE L1 -5947 1000 49 24 0 0 0 chr1 94765048 94765072 -187428592 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr1 94765403 94765458 -187428206 + AT_rich Low_complexity Low_complexity 1 55 0 517 364 132 24 chr1 94766913 94767419 -187426245 + L2 LINE L2 2345 2905 -409 249 323 77 26 chr1 94767550 94767705 -187425959 + L2 LINE L2 3149 3311 -2 338 318 65 68 chr1 94769542 94769866 -187423798 + HAL1 LINE L1 1121 1443 -1064 1204 264 53 108 chr1 94769926 94770667 -187422997 + L1ME LINE L1 17 716 -5403 467 239 199 73 chr1 94770865 94771246 -187422418 + L1ME LINE L1 2617 3045 -3084 764 305 72 18 chr1 94771604 94772004 -187421660 + L1ME LINE L1 4030 4451 -1678 253 275 0 0 chr1 94772051 94772120 -187421544 + L1ME LINE L1 5432 5500 -653 316 341 111 66 chr1 94774130 94774570 -187419094 + L2 LINE L2 2804 3263 -9 22 70 0 0 chr1 94775073 94775116 -187418548 + AT_rich Low_complexity Low_complexity 1 43 0 250 291 0 4 chr1 94776058 94776130 -187417534 - MIR SINE MIR -110 98 28 22 35 0 0 chr1 94777271 94777300 -187416364 + AT_rich Low_complexity Low_complexity 1 29 0 1727 199 0 3 chr1 94777463 94777775 -187415889 + AluJo SINE Alu 1 311 -1 21 57 0 0 chr1 94779491 94779526 -187414138 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 94779549 94779577 -187414087 + AT_rich Low_complexity Low_complexity 1 28 0 1843 47 4 0 chr1 94779812 94780044 -187413620 - L1PA7 LINE L1 -11 6143 5911 2792 139 28 20 chr1 94780059 94780188 -187413476 + L1PB1 LINE L1 5652 5778 -373 447 19 0 0 chr1 94780188 94780240 -187413424 + (TA)n Simple_repeat Simple_repeat 2 53 0 2792 139 28 20 chr1 94780240 94780606 -187413058 + L1PB1 LINE L1 5778 6151 0 23 0 0 0 chr1 94780996 94781019 -187412645 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 94781070 94781092 -187412572 + AT_rich Low_complexity Low_complexity 1 22 0 35 41 0 0 chr1 94782454 94782503 -187411161 + AT_rich Low_complexity Low_complexity 1 49 0 1917 161 27 6 chr1 94782530 94782866 -187410798 - MER2 DNA MER2_type 0 344 2 340 301 75 15 chr1 94782939 94783072 -187410592 - MIR3 SINE MIR -54 154 14 27 73 0 0 chr1 94783461 94783516 -187410148 + AT_rich Low_complexity Low_complexity 1 55 0 358 22 0 0 chr1 94783872 94783918 -187409746 - MADE1 DNA Mariner -34 46 1 21 104 0 0 chr1 94784737 94784814 -187408850 + AT_rich Low_complexity Low_complexity 1 77 0 24 0 0 0 chr1 94785059 94785083 -187408581 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 94785365 94785403 -187408261 + AT_rich Low_complexity Low_complexity 1 38 0 26 74 0 0 chr1 94785483 94785537 -187408127 + AT_rich Low_complexity Low_complexity 1 54 0 2625 134 22 26 chr1 94785883 94786234 -187407430 - MER65C LTR ERV1 0 461 111 2035 139 0 0 chr1 94786234 94786544 -187407120 - AluSx SINE Alu -2 310 1 2625 134 22 26 chr1 94786544 94786655 -187407009 - MER65C LTR ERV1 -350 111 1 861 301 57 35 chr1 94786655 94787147 -187406517 - MER65C-int LTR ERV1 0 4871 4369 2145 237 53 41 chr1 94787233 94787795 -187405869 - MER65C-int LTR ERV1 -698 4173 3605 276 159 0 0 chr1 94787879 94787923 -187405741 - MER50-int LTR ERV1 -2424 5696 5653 2065 191 83 119 chr1 94787969 94789545 -187404119 - MER50-int LTR ERV1 -1353 4978 2805 405 299 40 11 chr1 94789817 94790023 -187403641 - MER50-int LTR ERV1 -2546 4188 2372 271 265 12 0 chr1 94790073 94790156 -187403508 - MER50-int LTR ERV1 -3356 3849 3766 1842 225 36 10 chr1 94790273 94790770 -187402894 - MER50-int LTR ERV1 -2384 2487 1978 2951 185 26 14 chr1 94790770 94791483 -187402181 - L1PA15-16 LINE L1 -3699 3150 2422 2550 130 3 3 chr1 94791485 94791876 -187401788 + L1PA16 LINE L1 5774 6164 -2 583 226 53 109 chr1 94791876 94791930 -187401734 - LTR57-int LTR ERVL -4288 1055 700 976 207 96 43 chr1 94791930 94792253 -187401411 - MER50-int LTR ERV1 -2964 1907 1568 638 281 162 20 chr1 94792253 94792555 -187401109 - MER34 LTR ERV1 -164 378 34 294 135 0 58 chr1 94792826 94792878 -187400786 - LTR57-int LTR ERVL -4992 351 303 2507 162 20 9 chr1 94793402 94793858 -187399806 - MER65C LTR ERV1 0 461 1 1317 151 68 65 chr1 94794665 94794957 -187398707 + AluJb SINE Alu 1 293 -9 222 143 0 0 chr1 94795317 94795352 -187398312 - L2 LINE L2 0 3272 3238 2363 94 0 0 chr1 94795656 94795955 -187397709 + AluSx SINE Alu 1 299 -13 784 221 119 17 chr1 94797007 94797242 -187396422 - MIR SINE MIR -2 260 2 313 264 72 18 chr1 94798723 94798890 -187394774 - L1ME4a LINE L1 -11 6110 5935 311 270 70 10 chr1 94798896 94798996 -187394668 + L1MC4 LINE L1 6614 6719 -1323 263 276 23 0 chr1 94799016 94799103 -187394561 - L1MC4 LINE L1 -1340 6702 6614 242 273 23 0 chr1 94799063 94799151 -187394513 + L1MC4 LINE L1 6614 6703 -1339 * 1308 234 116 49 chr1 94799130 94799173 -187394491 - L1ME4a LINE L1 -157 5964 5925 6144 93 10 3 chr1 94799173 94799851 -187393813 - L1PA14 LINE L1 -1 6160 5488 276 30 0 0 chr1 94799851 94799884 -187393780 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1943 140 0 4 chr1 94799888 94800167 -187393497 - AluSx SINE Alu -30 282 5 6144 93 10 3 chr1 94800167 94800841 -187392823 - L1PA14 LINE L1 -675 5486 4821 1308 234 116 49 chr1 94800841 94801434 -187392230 - L1ME4a LINE L1 -196 5925 5285 326 330 142 52 chr1 94802334 94802664 -187391000 - L3b LINE CR1 -8 1575 1216 2777 171 54 35 chr1 94806387 94806938 -187386726 - MER68 LTR ERV1 0 562 1 22 0 0 0 chr1 94807366 94807388 -187386276 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 94807598 94807627 -187386037 + AT_rich Low_complexity Low_complexity 1 29 0 1930 139 0 0 chr1 94807891 94808165 -187385499 - AluSx SINE Alu -10 302 29 432 270 109 29 chr1 94808768 94808942 -187384722 - MIR SINE MIR -34 228 41 221 391 102 0 chr1 94808964 94809092 -187384572 - MIR3 SINE MIR -14 194 54 1179 273 94 25 chr1 94809178 94809699 -187383965 + L2 LINE L2 2142 2792 -522 403 150 0 237 chr1 94809754 94809927 -187383737 + L2 LINE L2 3174 3305 -8 431 222 93 0 chr1 94809931 94810039 -187383625 - L2 LINE L2 0 3313 3196 309 317 144 0 chr1 94810484 94810651 -187383013 + MIR3 SINE MIR 11 201 -7 297 0 0 0 chr1 94811154 94811187 -187382477 + (CA)n Simple_repeat Simple_repeat 1 33 0 573 292 87 32 chr1 94811654 94811873 -187381791 + MIR SINE MIR 8 238 -24 381 250 131 48 chr1 94812202 94812370 -187381294 - MER5A DNA MER1_type -1 188 7 330 281 20 75 chr1 94812558 94812704 -187380960 + MIR SINE MIR 14 151 -111 726 193 7 15 chr1 94812719 94812854 -187380810 + L2 LINE L2 3179 3312 -1 234 290 58 0 chr1 94812887 94812956 -187380708 - L2 LINE L2 -77 3195 3123 2088 139 0 7 chr1 94814520 94814822 -187378842 - AluSx SINE Alu -12 300 1 383 311 15 45 chr1 94815269 94815401 -187378263 - L2 LINE L2 -4 3268 3141 1851 174 0 16 chr1 94816079 94816389 -187377275 + AluJb SINE Alu 1 305 -7 22 56 0 0 chr1 94816608 94816644 -187377020 + AT_rich Low_complexity Low_complexity 1 36 0 477 314 37 1 chr1 94816701 94816857 -187376807 - MIR SINE MIR -55 153 30 378 323 0 16 chr1 94817034 94817158 -187376506 + MIR SINE MIR 20 141 -121 1742 162 14 10 chr1 94817540 94817837 -187375827 + AluJb SINE Alu 1 298 -14 13714 176 44 41 chr1 94818039 94819255 -187374409 - L1MA4A LINE L1 -6 7359 6148 2123 97 50 0 chr1 94819255 94819534 -187374130 - AluSq SINE Alu -16 297 5 13714 176 44 41 chr1 94819534 94820756 -187372908 - L1MA4A LINE L1 -1217 6148 4931 239 222 49 12 chr1 94820756 94820837 -187372827 + MER31A LTR ERV1 268 351 -134 13714 176 44 41 chr1 94820837 94823388 -187370276 - L1MA4A LINE L1 -2434 4931 2327 2445 81 0 3 chr1 94823388 94823696 -187369968 - AluY SINE Alu -4 307 1 13714 176 44 41 chr1 94823696 94826010 -187367654 - L1MA4A LINE L1 -5038 2327 21 370 312 122 40 chr1 94826378 94826830 -187366834 - L1M4 LINE L1 -1601 4545 4057 262 103 0 0 chr1 94826832 94826871 -187366793 + U3 snRNA snRNA 1 39 -178 409 256 126 11 chr1 94827015 94827206 -187366458 - L1M4 LINE L1 -2319 3827 3615 284 249 89 35 chr1 94828177 94828346 -187365318 + Charlie7 DNA MER1_type 2435 2612 0 250 298 137 46 chr1 94828365 94828496 -187365168 + MIR SINE MIR 49 191 -71 42725 32 25 1 chr1 94828958 94834968 -187358696 - L1PA3 LINE L1 0 6155 2 354 311 216 7 chr1 94837825 94837973 -187355691 + MIR3 SINE MIR 19 197 -11 189 214 0 24 chr1 94838308 94838350 -187355314 + MIR SINE MIR 172 212 -50 1778 189 53 13 chr1 94839318 94839693 -187353971 + MLT1B LTR MaLR 1 390 0 1706 202 15 35 chr1 94840177 94840573 -187353091 - MLT1D LTR MaLR 0 505 118 23 0 0 0 chr1 94840575 94840598 -187353066 + AT_rich Low_complexity Low_complexity 1 23 0 6372 123 26 9 chr1 94840598 94841419 -187352245 - L1PB1 LINE L1 -1 6150 5301 2191 106 0 3 chr1 94841419 94841726 -187351938 - AluSx SINE Alu 0 306 1 6372 123 26 9 chr1 94841726 94842280 -187351384 - L1PB1 LINE L1 -850 5301 4758 366 196 29 29 chr1 94842340 94842442 -187351222 + LTR33A LTR ERVL 409 510 -13 1668 245 162 33 chr1 94843067 94843882 -187349782 + HAL1b LINE L1 166 1085 -263 2129 110 0 7 chr1 94843963 94844255 -187349409 + AluSc SINE Alu 1 290 -19 2206 125 0 6 chr1 94845196 94845509 -187348155 - AluSx SINE Alu -1 311 1 547 262 63 59 chr1 94846418 94846655 -187347009 - MLT1K LTR MaLR -127 461 224 32 0 0 0 chr1 94846834 94846866 -187346798 + AT_rich Low_complexity Low_complexity 1 32 0 1392 225 51 109 chr1 94847355 94847981 -187345683 + MLT1G LTR MaLR 1 590 0 695 287 44 49 chr1 94848011 94848487 -187345177 + L1ME3A LINE L1 5424 5884 -286 495 240 159 29 chr1 94848580 94848709 -187344955 + MIR SINE MIR 8 119 -143 1590 103 5 0 chr1 94848709 94848922 -187344742 + AluSq SINE Alu 83 296 -17 192 40 0 0 chr1 94848925 94848950 -187344714 + (TAA)n Simple_repeat Simple_repeat 2 26 0 495 240 159 29 chr1 94848950 94849024 -187344640 + MIR SINE MIR 120 242 -20 753 310 107 61 chr1 94849367 94850070 -187343594 + L1MEd LINE L1 26 760 -5359 434 296 82 15 chr1 94850165 94850361 -187343303 + L1MEd LINE L1 895 1103 -5016 23 0 0 0 chr1 94850719 94850742 -187342922 + AT_rich Low_complexity Low_complexity 1 23 0 1290 220 14 0 chr1 94850784 94851070 -187342594 - L1M2 LINE L1 -4264 2585 2296 1408 212 56 117 chr1 94851161 94851304 -187342360 + MLT1D LTR MaLR 7 157 -348 1730 134 24 3 chr1 94851304 94851595 -187342069 - L1PA16 LINE L1 -9 6157 5861 1408 212 56 117 chr1 94851595 94851974 -187341690 + MLT1D LTR MaLR 157 489 -16 229 227 23 0 chr1 94852825 94852869 -187340795 - L2 LINE L2 -20 3252 3208 525 318 91 14 chr1 94853594 94853814 -187339850 + MIR SINE MIR 23 259 -3 593 330 119 40 chr1 94854659 94855216 -187338448 - L2 LINE L2 0 3272 2657 1581 176 33 36 chr1 94855216 94855579 -187338085 + MLT1A1 LTR MaLR 4 365 0 593 330 119 40 chr1 94855579 94855688 -187337976 - L2 LINE L2 -615 2657 2558 773 236 49 20 chr1 94855923 94856126 -187337538 + Charlie8 DNA MER1_type 1 209 -2208 235 207 52 0 chr1 94856149 94856207 -187337457 + Charlie8 DNA MER1_type 1362 1422 -995 1183 229 70 44 chr1 94856250 94856830 -187336834 + MLT1D LTR MaLR 11 505 0 200 278 58 13 chr1 94857009 94857098 -187336566 + MER5B DNA MER1_type 10 112 -77 236 213 0 0 chr1 94857285 94857332 -187336332 + L2 LINE L2 3267 3313 0 421 270 63 9 chr1 94858455 94858566 -187335098 - L2 LINE L2 -6 3266 3150 185 139 23 0 chr1 94858707 94858750 -187334914 + CT-rich Low_complexity Low_complexity 2 45 0 793 297 59 30 chr1 94858775 94859179 -187334485 - MLT1K LTR MaLR -162 426 11 443 302 27 0 chr1 94859964 94860113 -187333551 - MIR SINE MIR -52 210 58 219 323 150 0 chr1 94860745 94860872 -187332792 - MIR SINE MIR -70 192 47 4435 142 71 15 chr1 94861550 94862395 -187331269 + L1MB3 LINE L1 5284 6175 -8 1850 124 67 0 chr1 94862614 94862896 -187330768 + AluSx SINE Alu 1 301 -11 1923 99 85 0 chr1 94864710 94864993 -187328671 + AluSx SINE Alu 1 307 -5 396 0 0 0 chr1 94865595 94865639 -187328025 + (TA)n Simple_repeat Simple_repeat 1 44 0 260 283 28 39 chr1 94866147 94866179 -187327485 + MIR SINE MIR 9 40 -182 1445 115 55 0 chr1 94866179 94866397 -187327267 + MER30 DNA MER1_type 1 230 0 260 283 28 39 chr1 94866397 94866521 -187327143 + MIR SINE MIR 40 160 -62 291 343 21 21 chr1 94866522 94866662 -187327002 + MIR SINE MIR 118 257 -5 306 340 109 39 chr1 94866831 94867419 -187326245 + L2 LINE L2 2286 2914 -400 1750 217 105 28 chr1 94867452 94867955 -187325709 + MLT1F LTR MaLR 1 542 0 517 125 10 58 chr1 94868190 94868294 -187325370 + MLT1D LTR MaLR 22 120 -385 548 171 0 0 chr1 94868294 94868399 -187325265 + L1MA7 LINE L1 6064 6168 -123 1186 118 64 5 chr1 94868401 94868605 -187325059 + MER7A DNA MER2_type 1 214 -132 759 105 8 0 chr1 94868638 94868762 -187324902 + L1MA7 LINE L1 6161 6285 -6 41 0 0 0 chr1 94868773 94868814 -187324850 + AT_rich Low_complexity Low_complexity 1 41 0 1476 178 41 13 chr1 94868841 94869156 -187324508 + MLT1D LTR MaLR 182 505 0 300 199 96 163 chr1 94869159 94869325 -187324339 + L2 LINE L2 3117 3271 -1 22 0 0 0 chr1 94869349 94869371 -187324293 + AT_rich Low_complexity Low_complexity 1 22 0 291 210 136 12 chr1 94869683 94869764 -187323900 + MIR SINE MIR 62 152 -56 1548 244 61 64 chr1 94869782 94870270 -187323394 - L2 LINE L2 -4 3309 2821 1472 126 39 78 chr1 94870270 94870603 -187323061 - MER33 DNA MER1_type 0 324 5 1548 244 61 64 chr1 94870603 94870715 -187322949 - L2 LINE L2 -492 2821 2710 2498 17 3 17 chr1 94870715 94871013 -187322651 - AluY SINE Alu -17 294 1 1548 244 61 64 chr1 94871013 94871269 -187322395 - L2 LINE L2 -603 2710 2453 467 264 8 0 chr1 94871354 94871475 -187322189 - L2 LINE L2 -372 2942 2821 2646 189 18 4 chr1 94871612 94872215 -187321449 - MER67B LTR ERV1 0 661 1 558 279 6 18 chr1 94872349 94872514 -187321150 + MER69A DNA AcHobo 1 163 -14 6203 167 33 22 chr1 94872776 94874745 -187318919 - L1MC1 LINE L1 0 6613 4619 565 202 126 38 chr1 94874772 94874955 -187318709 + MSTD LTR MaLR 40 238 -158 1083 168 10 34 chr1 94874974 94875183 -187318481 + MSTD LTR MaLR 193 396 0 1144 230 12 79 chr1 94875183 94875601 -187318063 - L1MC1 LINE L1 -1803 4623 4234 * 3039 182 38 2 chr1 94875594 94876072 -187317592 - L1MC1 LINE L1 -5828 598 94 1677 173 0 7 chr1 94876072 94876350 -187317314 - AluJb SINE Alu -34 278 3 3039 182 38 2 chr1 94876350 94876448 -187317216 - L1MC1 LINE L1 -6332 94 1 373 230 61 0 chr1 94876449 94876545 -187317119 + MER5A DNA MER1_type 64 162 -16 297 171 0 29 chr1 94877239 94877309 -187316355 + MLT1K LTR MaLR 504 571 -17 192 179 0 0 chr1 94877614 94877653 -187316011 + T-rich Low_complexity Low_complexity 2 40 0 2149 103 31 3 chr1 94878330 94878622 -187315042 + AluSq SINE Alu 1 300 -13 183 303 30 45 chr1 94879323 94879389 -187314275 - MIR SINE MIR -125 83 19 196 209 23 0 chr1 94879462 94879505 -187314159 - L2 LINE L2 -43 3229 3186 272 313 62 31 chr1 94879531 94879691 -187313973 + MIR SINE MIR 67 231 -31 261 300 80 60 chr1 94879846 94880046 -187313618 - L2 LINE L2 -262 3010 2807 970 309 51 47 chr1 94880209 94881960 -187311704 - L1MEd LINE L1 -2192 3937 2180 1994 135 0 26 chr1 94882121 94882425 -187311239 - AluSq SINE Alu -12 301 6 497 276 35 98 chr1 94882923 94883289 -187310375 + MLT1I LTR MaLR 65 407 -2 440 350 49 15 chr1 94883296 94883499 -187310165 - HAL1 LINE L1 -910 1597 1388 378 74 0 0 chr1 94883499 94883553 -187310111 + (TG)n Simple_repeat Simple_repeat 2 55 0 745 246 48 37 chr1 94883569 94883923 -187309741 - L1MEd LINE L1 -4867 1252 895 24 53 0 0 chr1 94883967 94884005 -187309659 + AT_rich Low_complexity Low_complexity 1 38 0 770 158 0 7 chr1 94884814 94884960 -187308704 + GA-rich Low_complexity Low_complexity 1 145 0 1604 209 74 27 chr1 94885250 94885696 -187307968 - MLT1C LTR MaLR 0 467 1 432 281 70 51 chr1 94886881 94887044 -187306620 + HAL1b LINE L1 332 490 -858 6003 133 23 33 chr1 94887044 94888126 -187305538 + MER11C LTR ERVK 1 1071 0 432 281 70 51 chr1 94888126 94888335 -187305329 + HAL1b LINE L1 490 711 -637 26 82 0 0 chr1 94888368 94888429 -187305235 + AT_rich Low_complexity Low_complexity 1 61 0 1587 242 130 32 chr1 94888613 94889150 -187304514 + MLT1E LTR MaLR 1 590 -3 * 2079 185 41 84 chr1 94889149 94889872 -187303792 + MER67B LTR ERV1 1 661 0 368 319 73 39 chr1 94890079 94890283 -187303381 + L1M4 LINE L1 2381 2591 -3555 21 0 0 0 chr1 94890351 94890372 -187303292 + AT_rich Low_complexity Low_complexity 1 21 0 2655 134 29 10 chr1 94890419 94890837 -187302827 + MSTA LTR MaLR 2 427 -1 2299 117 3 0 chr1 94891087 94891396 -187302268 - AluSx SINE Alu -2 310 1 969 233 72 11 chr1 94891966 94892228 -187301436 + L2 LINE L2 3 280 -3034 1172 263 53 54 chr1 94892240 94892927 -187300737 + L2 LINE L2 2550 3313 0 1055 225 62 74 chr1 94892928 94893117 -187300547 - MER20B DNA MER1_type -1 782 592 2245 111 3 0 chr1 94893117 94893414 -187300250 + AluSq SINE Alu 3 300 -13 1055 225 62 74 chr1 94893414 94893843 -187299821 - MER20B DNA MER1_type -191 592 89 1802 126 95 26 chr1 94893843 94894192 -187299472 + THE1C LTR MaLR 3 375 0 1055 225 62 74 chr1 94894192 94894240 -187299424 - MER20B DNA MER1_type -694 89 42 308 335 227 15 chr1 94894283 94894640 -187299024 + L2 LINE L2 1916 2196 -1118 14292 128 41 4 chr1 94894640 94896919 -187296745 - Tigger1 DNA MER2_type 0 2418 50 192 40 0 0 chr1 94896919 94896944 -187296720 + (CAA)n Simple_repeat Simple_repeat 2 26 0 14292 128 41 4 chr1 94896944 94896994 -187296670 - Tigger1 DNA MER2_type -2368 50 3 308 335 227 15 chr1 94896994 94897244 -187296420 + L2 LINE L2 2196 2652 -662 547 272 42 84 chr1 94897290 94897555 -187296109 - MIR SINE MIR 0 262 4 517 62 0 0 chr1 94897840 94897932 -187295732 + Alu SINE Alu 221 312 0 187 140 40 0 chr1 94899511 94899561 -187294103 + (CA)n Simple_repeat Simple_repeat 1 52 0 219 103 0 0 chr1 94899685 94899724 -187293940 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 357 24 0 0 chr1 94902563 94902605 -187291059 + (CA)n Simple_repeat Simple_repeat 2 43 0 828 193 0 12 chr1 94904362 94904528 -187289136 + MER3 DNA MER1_type 1 164 -45 4051 204 65 37 chr1 94904534 94906544 -187287120 - L1ME1 LINE L1 -5 6230 4167 1839 124 9 103 chr1 94906544 94906909 -187286755 + AluSx SINE Alu 1 312 0 4051 204 65 37 chr1 94906909 94906941 -187286723 - L1ME1 LINE L1 -2068 4167 4137 2985 244 50 22 chr1 94906952 94908059 -187285605 - L1ME1 LINE L1 -4899 1497 360 460 231 63 35 chr1 94908118 94908261 -187285403 - L1ME1 LINE L1 -6213 183 37 229 137 59 0 chr1 94908264 94908315 -187285349 + MER3 DNA MER1_type 156 209 0 840 182 18 18 chr1 94908365 94908535 -187285129 - MER20B DNA MER1_type -47 172 3 519 133 19 29 chr1 94908721 94908826 -187284838 + L1MC4 LINE L1 7939 8042 0 201 309 203 41 chr1 94908944 94909067 -187284597 + MIR SINE MIR 41 183 -79 315 297 79 0 chr1 94909134 94909235 -187284429 - MIR SINE MIR -67 141 33 628 281 56 22 chr1 94909698 94910068 -187283596 + L1ME LINE L1 5257 5647 -515 6024 169 115 40 chr1 94910076 94910288 -187283376 - Charlie5 DNA MER1_type 0 2624 2429 1261 125 101 0 chr1 94910288 94910496 -187283168 + MER30 DNA MER1_type 2 230 0 6024 169 115 40 chr1 94910496 94911077 -187282587 - Charlie5 DNA MER1_type -195 2429 1893 2330 107 7 0 chr1 94911077 94911387 -187282277 + AluSx SINE Alu 1 312 0 6024 169 115 40 chr1 94911387 94912239 -187281425 - Charlie5 DNA MER1_type -731 1893 855 2091 202 110 8 chr1 94912247 94912890 -187280774 - Charlie5 DNA MER1_type -1903 709 1 217 346 10 0 chr1 94913157 94913261 -187280403 + (TA)n Simple_repeat Simple_repeat 2 106 0 422 246 8 0 chr1 94914974 94915104 -187278560 + CT-rich Low_complexity Low_complexity 2 132 0 2208 145 18 2 chr1 94915104 94915498 -187278166 - L1MB1 LINE L1 0 6168 5769 596 162 19 9 chr1 94915505 94915610 -187278054 - FLAM_C SINE Alu -33 110 5 10195 199 36 11 chr1 94915617 94918681 -187274983 - L1MB1 LINE L1 -389 5779 2593 1760 118 64 44 chr1 94919367 94919664 -187274000 + AluSx SINE Alu 1 303 -9 28 48 0 0 chr1 94921360 94921402 -187272262 + AT_rich Low_complexity Low_complexity 1 42 0 455 314 57 7 chr1 94922174 94922314 -187271350 + L2 LINE L2 3126 3272 0 324 270 78 26 chr1 94922315 94922430 -187271234 + MIR SINE MIR 8 128 -134 243 303 91 30 chr1 94922545 94922644 -187271020 - L2 LINE L2 -20 3252 3148 257 60 0 60 chr1 94922978 94923028 -187270636 - L1PA14 LINE L1 -1 6160 6114 21 57 0 0 chr1 94923318 94923353 -187270311 + AT_rich Low_complexity Low_complexity 1 35 0 206 216 0 0 chr1 94923434 94923471 -187270193 + (TG)n Simple_repeat Simple_repeat 2 38 0 190 294 39 0 chr1 94923644 94923695 -187269969 - L2 LINE L2 -14 3258 3206 284 298 131 24 chr1 94923826 94923994 -187269670 + L2 LINE L2 2164 2349 -965 517 335 113 12 chr1 94924025 94924344 -187269320 + L2 LINE L2 2461 2811 -503 413 379 19 49 chr1 94924376 94924640 -187269024 + L2 LINE L2 2956 3211 -61 227 323 46 102 chr1 94925017 94925302 -187268362 - L2 LINE L2 -111 3161 2893 516 279 142 12 chr1 94926216 94926438 -187267226 + MIR SINE MIR 2 250 -12 2266 206 84 18 chr1 94926958 94927555 -187266109 + L1ME2 LINE L1 5448 6083 -81 1756 167 47 30 chr1 94929016 94929381 -187264283 + MLT1A2 LTR MaLR 4 374 0 23 0 0 0 chr1 94931114 94931137 -187262527 + AT_rich Low_complexity Low_complexity 1 23 0 374 221 158 38 chr1 94931289 94931447 -187262217 - MER69A DNA AcHobo 0 177 1 5847 110 21 10 chr1 94931758 94933736 -187259928 - L1PA15 LINE L1 -7 6809 4811 10131 212 19 20 chr1 94933753 94936316 -187257348 - L1PA15 LINE L1 -2172 4625 2062 2095 101 52 60 chr1 94936316 94936683 -187256981 - THE1B LTR MaLR 0 364 1 12167 78 11 1 chr1 94936686 94938247 -187255417 - THE1B-int LTR MaLR -3 1577 1 2052 101 48 77 chr1 94938247 94938452 -187255212 - THE1B LTR MaLR 0 364 173 2274 121 0 0 chr1 94938452 94938757 -187254907 - AluSx SINE Alu -7 305 1 2052 101 48 77 chr1 94938757 94938926 -187254738 - THE1B LTR MaLR -191 173 1 10131 212 19 20 chr1 94938926 94939728 -187253936 - L1PA15 LINE L1 -4735 2062 1253 2756 198 69 6 chr1 94939973 94940609 -187253055 + L1MB4 LINE L1 5502 6177 -3 26 50 0 0 chr1 94940658 94940698 -187252966 + AT_rich Low_complexity Low_complexity 1 40 0 1889 175 28 22 chr1 94940787 94941241 -187252423 + MLT2B1 LTR ERVL 1 515 0 244 352 62 40 chr1 94941262 94941583 -187252081 - L2 LINE L2 -1879 1435 1108 790 243 120 21 chr1 94941914 94942247 -187251417 - MLT1J1 LTR MaLR -48 398 33 6778 65 16 0 chr1 94942345 94943884 -187249780 + L1PA10 LINE L1 4617 6163 -5 24 0 0 0 chr1 94943884 94943908 -187249756 + AT_rich Low_complexity Low_complexity 1 24 0 206 139 0 28 chr1 94944002 94944038 -187249626 + MIR SINE MIR 110 144 -118 300 288 157 13 chr1 94945383 94945536 -187248128 - MIR3 SINE MIR -15 193 19 25 31 0 0 chr1 94945868 94945900 -187247764 + AT_rich Low_complexity Low_complexity 1 32 0 872 156 0 0 chr1 94945900 94946022 -187247642 - FLAM_A SINE Alu -11 122 1 415 315 96 0 chr1 94946039 94946217 -187247447 - MIR SINE MIR -3 259 65 221 306 176 19 chr1 94946584 94946692 -187246972 - MIR3 SINE MIR -54 154 30 452 305 128 0 chr1 94946997 94947184 -187246480 - MIR SINE MIR -15 247 37 191 205 0 0 chr1 94948235 94948274 -187245390 - MIR SINE MIR -93 115 77 920 271 117 55 chr1 94951749 94952221 -187241443 - MLT1J LTR MaLR 0 511 11 2231 76 7 0 chr1 94953416 94953734 -187239930 - AluSg SINE Alu 0 320 1 273 355 16 8 chr1 94955081 94955205 -187238459 + MIR SINE MIR 12 136 -126 974 183 80 23 chr1 94955248 94955508 -187238156 - MER33 DNA MER1_type -1 323 49 1074 259 157 5 chr1 94955508 94955890 -187237774 - MLT1J LTR MaLR 0 511 72 210 105 0 0 chr1 94956204 94956242 -187237422 + (A)n Simple_repeat Simple_repeat 1 38 0 528 277 103 11 chr1 94956763 94956947 -187236717 + MIR3 SINE MIR 5 205 -3 1526 310 79 34 chr1 94957247 94958294 -187235370 - HERV16 LTR ERVL -621 4482 3427 1705 337 7 19 chr1 94958306 94958668 -187234996 - HERV16 LTR ERVL -2162 3602 3250 4841 172 31 40 chr1 94958668 94959533 -187234131 + MER21B LTR ERV1 4 860 -3 1705 337 7 19 chr1 94959533 94959847 -187233817 - HERV16 LTR ERVL -2514 3250 2934 1038 207 5 5 chr1 94959862 94960050 -187233614 - MER58A DNA MER1_type -10 214 27 689 307 180 0 chr1 94960056 94960323 -187233341 - HERV16 LTR ERVL -2106 2890 2576 1038 260 67 19 chr1 94960412 94961155 -187232509 - HERV16 LTR ERVL -4135 861 3 488 233 117 34 chr1 94961230 94961450 -187232214 + MLT1L LTR MaLR 279 609 -6 603 241 58 40 chr1 94961455 94961629 -187232035 - MIR SINE MIR -70 192 16 1326 220 71 43 chr1 94961778 94962227 -187231437 + MLT1C LTR MaLR 1 466 -1 240 35 0 0 chr1 94963707 94963736 -187229928 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 491 211 39 23 chr1 94964083 94964211 -187229453 - MIR SINE MIR -11 251 122 522 236 81 23 chr1 94964563 94964737 -187228927 - L1ME4a LINE L1 0 6121 5938 186 71 0 0 chr1 94967105 94967133 -187226531 + (A)n Simple_repeat Simple_repeat 1 28 0 907 217 0 15 chr1 94968101 94968299 -187225365 - MER115 DNA AcHobo 0 693 499 338 169 0 14 chr1 94968440 94968511 -187225153 - MER115 DNA AcHobo -199 494 425 450 327 13 0 chr1 94968710 94968863 -187224801 - MER115 DNA AcHobo -537 156 2 227 314 110 23 chr1 94968863 94969127 -187224537 + L2 LINE L2 2560 2846 -468 362 373 109 32 chr1 94969226 94969510 -187224154 + L2 LINE L2 2967 3272 0 258 105 0 0 chr1 94969521 94969559 -187224105 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 375 23 0 0 chr1 94970216 94970260 -187223404 + (CA)n Simple_repeat Simple_repeat 2 45 0 393 246 63 8 chr1 94970484 94970610 -187223054 - MIR SINE MIR -43 219 87 186 316 152 45 chr1 94970730 94970974 -187222690 + L3 LINE CR1 1217 1486 -91 561 220 67 141 chr1 94971000 94971481 -187222183 + MER65A LTR ERV1 1 445 0 681 214 9 0 chr1 94971547 94971659 -187222005 + MER81 DNA DNA 1 113 -1 884 197 27 16 chr1 94971721 94971904 -187221760 + MER5A DNA MER1_type 3 187 -2 302 253 27 13 chr1 94971926 94972001 -187221663 + L3 LINE CR1 1495 1570 -7 188 71 0 0 chr1 94973789 94973817 -187219847 + L2 LINE L2 3286 3313 0 237 279 0 73 chr1 94974083 94974151 -187219513 - MIR SINE MIR -97 111 48 465 285 29 87 chr1 94974756 94975033 -187218631 + MIR SINE MIR 2 262 0 183 42 0 0 chr1 94975386 94975410 -187218254 + (CAA)n Simple_repeat Simple_repeat 2 25 0 181 371 45 0 chr1 94977874 94977963 -187215701 + L2 LINE L2 1851 1943 -1371 912 261 74 42 chr1 94978000 94978379 -187215285 + MLT1J1 LTR MaLR 27 417 -29 293 308 58 58 chr1 94978737 94978961 -187214703 + L2 LINE L2 2425 2648 -666 377 295 64 64 chr1 94979112 94979346 -187214318 - MIR SINE MIR -27 235 2 209 323 110 59 chr1 94979567 94979904 -187213760 + L2 LINE L2 2915 3268 -4 1384 167 65 20 chr1 94980066 94980372 -187213292 + MER33 DNA MER1_type 5 324 0 452 127 15 60 chr1 94980476 94980610 -187213054 + GA-rich Low_complexity Low_complexity 2 129 0 327 203 0 0 chr1 94980949 94981028 -187212636 + GA-rich Low_complexity Low_complexity 2 80 0 22 0 0 0 chr1 94982161 94982183 -187211481 + AT_rich Low_complexity Low_complexity 1 22 0 1589 144 213 24 chr1 94982184 94982601 -187211063 + LTR54B LTR ERV1 1 496 -2 494 290 0 0 chr1 94983085 94983209 -187210455 - MER94 DNA DNA -10 124 1 2347 87 0 32 chr1 94983657 94983968 -187209696 + AluSc SINE Alu 1 301 -8 454 313 40 13 chr1 94985159 94985309 -187208355 - MIR SINE MIR -77 185 32 451 281 72 26 chr1 94986269 94986422 -187207242 + MIR SINE MIR 29 188 -74 657 328 27 93 chr1 94986861 94987346 -187206318 + L2 LINE L2 2820 3272 0 556 255 181 0 chr1 94988035 94988223 -187205441 + MIR SINE MIR 28 249 -13 1980 165 13 7 chr1 94988544 94988911 -187204753 - AluJb SINE Alu 0 369 1 242 268 14 28 chr1 94989247 94989318 -187204346 + Charlie4 DNA MER1_type 1888 1957 -4 546 313 25 30 chr1 94989445 94989643 -187204021 + MIR SINE MIR 6 202 -60 737 154 0 0 chr1 94989766 94989870 -187203794 - 7SLRNA srpRNA srpRNA -3 317 214 22 0 0 0 chr1 94991189 94991211 -187202453 + AT_rich Low_complexity Low_complexity 1 22 0 495 306 131 4 chr1 94992136 94992365 -187201299 - MIR SINE MIR 0 262 5 2104 112 30 0 chr1 94992601 94992896 -187200768 + AluSx SINE Alu 1 304 -8 1227 136 0 0 chr1 94992896 94993073 -187200591 + AluSg/x SINE Alu 134 310 -2 225 173 14 0 chr1 94993076 94993126 -187200538 - MIR SINE MIR -89 119 66 350 270 185 5 chr1 94993540 94993751 -187199913 - MIR SINE MIR -6 256 8 411 233 9 69 chr1 94993942 94994058 -187199606 - L2 LINE L2 -1 3312 3204 819 194 56 0 chr1 94994065 94994225 -187199439 - MER58A DNA MER1_type -11 213 45 346 196 31 62 chr1 94994342 94994439 -187199225 - L2 LINE L2 -192 3080 2987 322 320 107 7 chr1 94994843 94995124 -187198540 + L1MEd LINE L1 622 930 -5189 295 272 29 14 chr1 94995281 94995485 -187198179 + L1MEd LINE L1 959 1202 -4917 263 158 18 53 chr1 94996062 94996119 -187197545 - MIR SINE MIR 0 262 208 195 42 0 0 chr1 94996278 94996302 -187197362 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1980 126 7 0 chr1 94996310 94996587 -187197077 + AluSx SINE Alu 1 279 -33 450 0 0 0 chr1 94996611 94996661 -187197003 + (TC)n Simple_repeat Simple_repeat 1 50 0 279 79 0 0 chr1 94996664 94996702 -187196962 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1740 168 7 11 chr1 94996702 94996987 -187196677 - AluJo SINE Alu -28 284 1 21 36 0 0 chr1 94996988 94997016 -187196648 + AT_rich Low_complexity Low_complexity 1 28 0 529 192 58 42 chr1 94997088 94997208 -187196456 + AluSg SINE Alu 4 125 -185 479 321 30 12 chr1 94997314 94997482 -187196182 - MER5A DNA MER1_type 0 189 19 468 340 123 39 chr1 94999430 95000094 -187193570 - L2 LINE L2 -49 3223 2413 2313 113 3 0 chr1 95000094 95000404 -187193260 + AluSp SINE Alu 1 311 -2 468 340 123 39 chr1 95000404 95000618 -187193046 - L2 LINE L2 -859 2413 2218 1014 148 117 0 chr1 95001114 95001310 -187192354 + MER20 DNA MER1_type 1 219 0 194 254 42 0 chr1 95001816 95001887 -187191777 + MIR SINE MIR 186 259 -3 249 311 14 0 chr1 95002869 95002943 -187190721 - MIR SINE MIR -22 240 166 203 254 149 0 chr1 95003095 95003162 -187190502 - MIR SINE MIR -18 244 168 15749 137 34 22 chr1 95003181 95003795 -187189869 - Tigger2 DNA MER2_type 0 2718 2113 1528 185 6 66 chr1 95003795 95004114 -187189550 - AluJb SINE Alu -12 300 1 15749 137 34 22 chr1 95004114 95006186 -187187478 - Tigger2 DNA MER2_type -605 2113 1 184 206 0 0 chr1 95006997 95007031 -187186633 + L2 LINE L2 3168 3201 -71 290 179 0 15 chr1 95008824 95008891 -187184773 + (TA)n Simple_repeat Simple_repeat 1 66 0 471 301 26 6 chr1 95009401 95009557 -187184107 - Charlie8 DNA MER1_type -2258 159 1 182 304 157 10 chr1 95011116 95011218 -187182446 + MIR3 SINE MIR 44 160 -48 377 274 55 85 chr1 95011231 95011432 -187182232 - MER102b DNA MER1_type -14 327 133 522 0 0 0 chr1 95011433 95011491 -187182173 + (TG)n Simple_repeat Simple_repeat 2 59 0 207 0 0 0 chr1 95011492 95011515 -187182149 + (GA)n Simple_repeat Simple_repeat 2 24 0 698 311 34 38 chr1 95011964 95012199 -187181465 + MIR SINE MIR 26 259 -3 396 293 10 0 chr1 95013376 95013475 -187180189 - L2 LINE L2 -1 3271 3172 * 506 368 158 9 chr1 95013470 95014247 -187179417 + L2 LINE L2 1959 2851 -463 313 314 0 12 chr1 95015343 95015429 -187178235 + MIR SINE MIR 67 151 -111 208 245 19 19 chr1 95015434 95015487 -187178177 + L2 LINE L2 3243 3295 -18 842 114 23 38 chr1 95015671 95015803 -187177861 - FLAM_C SINE Alu -3 130 1 580 246 0 103 chr1 95015981 95016058 -187177606 - MIR SINE MIR 0 262 179 2557 57 0 0 chr1 95016058 95016359 -187177305 - AluY SINE Alu -10 301 1 580 246 0 103 chr1 95016359 95016484 -187177180 - MIR SINE MIR -83 179 81 1168 157 0 0 chr1 95017405 95017577 -187176087 + FRAM SINE Alu 1 166 -10 3733 146 14 23 chr1 95017595 95018044 -187175620 - L1MA6 LINE L1 -412 5888 5436 2381 103 3 0 chr1 95018044 95018354 -187175310 + AluSp SINE Alu 3 313 0 3733 146 14 23 chr1 95018354 95018408 -187175256 - L1MA6 LINE L1 -864 5436 5383 2445 122 14 3 chr1 95018408 95018768 -187174896 + THE1B LTR MaLR 1 364 0 3733 146 14 23 chr1 95018768 95019249 -187174415 - L1MA6 LINE L1 -917 5383 4917 2694 111 12 9 chr1 95019249 95019671 -187173993 + L1MA6 LINE L1 5874 6299 -1 1602 144 21 68 chr1 95020800 95021221 -187172443 + AluJb SINE Alu 1 406 0 693 153 0 8 chr1 95021741 95021872 -187171792 - MSTB2 LTR MaLR 0 457 328 877 234 25 39 chr1 95021875 95022161 -187171503 + THE1B-int LTR MaLR 331 612 -1039 1445 232 74 32 chr1 95022162 95022542 -187171122 - MSTD LTR MaLR 0 396 1 210 314 105 0 chr1 95022567 95022653 -187171011 - L2 LINE L2 -19 3294 3200 1096 340 93 29 chr1 95022659 95023379 -187170285 + L3 LINE CR1 615 1380 -197 847 283 178 30 chr1 95023386 95023856 -187169808 + L2 LINE L2 2776 3313 0 254 321 128 0 chr1 95023883 95023992 -187169672 + L3 LINE CR1 1450 1572 -5 245 353 37 25 chr1 95024056 95024300 -187169364 - L2 LINE L2 -210 3062 2816 226 205 0 0 chr1 95024432 95024471 -187169193 + L2 LINE L2 3263 3301 -12 503 211 186 50 chr1 95025294 95025493 -187168171 + MIR SINE MIR 7 232 -30 22 56 0 0 chr1 95025529 95025565 -187168099 + AT_rich Low_complexity Low_complexity 1 36 0 396 0 0 0 chr1 95025939 95025983 -187167681 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2195 65 0 7 chr1 95025983 95026260 -187167404 - AluY SINE Alu -36 275 1 296 319 68 8 chr1 95026324 95026442 -187167222 + MIR SINE MIR 53 176 -32 2063 79 4 4 chr1 95026936 95027203 -187166461 + AluY SINE Alu 42 308 -3 1473 167 22 44 chr1 95028041 95028316 -187165348 + AluJo SINE Alu 44 312 0 220 224 20 0 chr1 95028748 95028797 -187164867 + (CATA)n Simple_repeat Simple_repeat 2 51 0 347 318 29 73 chr1 95028851 95029125 -187164539 + L2 LINE L2 1561 1822 -1492 257 308 119 7 chr1 95029254 95029397 -187164267 + L2 LINE L2 2044 2202 -1112 231 36 0 0 chr1 95029628 95029656 -187164008 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 257 353 15 2 chr1 95030129 95030337 -187163327 - L1MEc LINE L1 -4983 1646 1226 1211 29 0 0 chr1 95031034 95031172 -187162492 - AluY SINE Alu -16 295 158 2025 112 34 7 chr1 95031447 95031742 -187161922 + AluSx SINE Alu 1 303 -9 692 270 41 91 chr1 95031821 95032101 -187161563 - MIR SINE MIR -4 258 1 21 0 0 0 chr1 95032179 95032200 -187161464 + AT_rich Low_complexity Low_complexity 1 21 0 237 202 10 39 chr1 95033101 95033205 -187160459 + (TA)n Simple_repeat Simple_repeat 1 101 0 2154 102 13 26 chr1 95034261 95034565 -187159099 - AluSx SINE Alu -12 300 1 813 320 60 45 chr1 95034908 95035423 -187158241 - L2 LINE L2 -1039 2275 1753 631 250 27 68 chr1 95036347 95036590 -187157074 - MIR SINE MIR -13 249 11 240 254 17 17 chr1 95038584 95038643 -187155021 + L2 LINE L2 3214 3272 0 2226 100 7 7 chr1 95039551 95039851 -187153813 + AluSx SINE Alu 1 300 -12 1116 275 153 25 chr1 95039860 95040464 -187153200 + L2 LINE L2 2622 3313 0 7585 22 0 6 chr1 95040575 95041645 -187152019 - L1PA4 LINE L1 -13 6142 5074 1780 186 7 0 chr1 95041645 95041941 -187151723 - AluJo SINE Alu -14 298 1 244 254 0 0 chr1 95042311 95042366 -187151298 + (TA)n Simple_repeat Simple_repeat 1 55 0 30394 101 13 61 chr1 95042786 95049245 -187144419 + L1PA7 LINE L1 12 6150 -4 341 240 0 0 chr1 95049242 95049334 -187144330 + L1ME LINE L1 5598 5692 -470 * 743 92 21 35 chr1 95050298 95050440 -187143224 + MER39B LTR ERV1 1 140 -513 2167 117 3 0 chr1 95050442 95050742 -187142922 + AluSx SINE Alu 1 301 -11 763 254 105 5 chr1 95050745 95050954 -187142710 - MIR SINE MIR -20 242 13 255 346 81 16 chr1 95051019 95051204 -187142460 - L2 LINE L2 -774 2540 2344 322 258 19 43 chr1 95051672 95051785 -187141879 + MIR3 SINE MIR 51 160 -48 327 364 68 6 chr1 95051901 95052077 -187141587 - MIR3 SINE MIR -13 195 9 2187 96 7 0 chr1 95052922 95053233 -187140431 + AluSp SINE Alu 1 313 0 682 205 0 24 chr1 95053457 95053584 -187140080 - L2 LINE L2 0 3313 3190 2270 85 3 0 chr1 95053639 95053945 -187139719 + AluSp SINE Alu 3 309 0 2435 88 7 0 chr1 95054181 95054486 -187139178 + AluSg SINE Alu 1 307 -3 1633 183 3 14 chr1 95055359 95055654 -187138010 + AluJb SINE Alu 1 292 -20 332 292 60 137 chr1 95058181 95058496 -187135168 + L2 LINE L2 2891 3181 -91 2141 173 25 41 chr1 95058549 95058598 -187135066 - MSTB1 LTR MaLR 0 432 384 2039 141 16 0 chr1 95058598 95058902 -187134762 - AluSx SINE Alu -3 309 1 2141 173 25 41 chr1 95058902 95059291 -187134373 - MSTB1 LTR MaLR -48 384 1 882 255 57 16 chr1 95059637 95059884 -187133780 + MIR SINE MIR 6 262 0 1455 218 22 0 chr1 95060290 95060565 -187133099 + AluJb SINE Alu 1 281 -31 1858 139 33 9 chr1 95060771 95061101 -187132563 - MER44D DNA MER2_type -1 608 1 1500 152 37 77 chr1 95061589 95061886 -187131778 - AluJo SINE Alu -27 285 1 1230 274 216 26 chr1 95062142 95062401 -187131263 + L2 LINE L2 1518 1726 -1588 2140 99 0 75 chr1 95062401 95062734 -187130930 - AluSg SINE Alu -2 308 1 1230 274 216 26 chr1 95062734 95063288 -187130376 + L2 LINE L2 1726 2486 -828 409 308 181 20 chr1 95064484 95064813 -187128851 + L2 LINE L2 2672 3053 -219 907 232 12 41 chr1 95065232 95065478 -187128186 - MIR SINE MIR -13 249 11 23 0 0 0 chr1 95066447 95066470 -187127194 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 95067409 95067431 -187126233 + AT_rich Low_complexity Low_complexity 1 22 0 1278 139 18 44 chr1 95067867 95068140 -187125524 - L1MD3 LINE L1 0 7995 7730 883 188 81 0 chr1 95068563 95068723 -187124941 - MER5A DNA MER1_type -15 174 2 375 280 36 10 chr1 95069107 95069241 -187124423 - MER5A DNA MER1_type -1 177 13 3125 174 29 59 chr1 95070465 95071291 -187122373 + Charlie1 DNA MER1_type 1960 2760 -1 204 287 13 71 chr1 95073282 95073385 -187120279 - MIR SINE MIR -73 135 54 762 137 137 0 chr1 95075595 95075734 -187117930 - MER20 DNA MER1_type -61 158 1 256 338 166 0 chr1 95076230 95076381 -187117283 + L2 LINE L2 2218 2393 -921 1483 138 5 5 chr1 95076444 95076668 -187116996 - AluSg/x SINE Alu -1 309 86 1626 192 23 54 chr1 95076702 95076853 -187116811 - L1MA9 LINE L1 -36 6276 6122 2180 117 3 3 chr1 95076853 95077160 -187116504 + AluSg SINE Alu 1 307 -3 1626 192 23 54 chr1 95077160 95077450 -187116214 - L1MA9 LINE L1 -190 6122 5849 * 3038 162 21 28 chr1 95077446 95078203 -187115461 - L1MA9 LINE L1 -271 6031 5306 467 204 0 0 chr1 95078206 95078294 -187115370 - Tigger7 DNA MER2_type -4 2483 2396 671 194 73 55 chr1 95078330 95078405 -187115259 - Tigger7 DNA MER2_type -536 169 97 2263 107 0 0 chr1 95078405 95078695 -187114969 + AluSg SINE Alu 1 290 -20 671 194 73 55 chr1 95078695 95078784 -187114880 - Tigger7 DNA MER2_type -608 97 2 2301 188 29 2 chr1 95078785 95079295 -187114369 - L1MA9 LINE L1 -838 5308 4785 377 293 164 5 chr1 95080127 95080319 -187113345 - MIR SINE MIR -5 257 37 387 0 0 0 chr1 95080701 95080744 -187112920 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 783 221 14 0 chr1 95080744 95080889 -187112775 - FRAM SINE Alu -18 148 2 2313 118 0 0 chr1 95080959 95081264 -187112400 - AluSx SINE Alu -5 307 3 2111 264 91 7 chr1 95081707 95082309 -187111355 + L2 LINE L2 1999 2766 -547 1592 182 19 29 chr1 95082309 95082616 -187111048 - AluJb SINE Alu -3 309 6 2111 264 91 7 chr1 95082616 95082954 -187110710 + L2 LINE L2 2766 3074 -239 1033 143 7 0 chr1 95082956 95083103 -187110561 + AluSx SINE Alu 34 181 -131 480 151 0 0 chr1 95083104 95083177 -187110487 + AluY SINE Alu 214 286 -25 285 285 44 15 chr1 95083191 95083328 -187110336 + L2 LINE L2 3096 3236 -77 293 290 72 36 chr1 95083612 95083805 -187109859 - L1MC/D LINE L1 -546 5813 5614 2311 99 0 6 chr1 95084567 95084880 -187108784 - AluSx SINE Alu -1 311 1 587 271 51 59 chr1 95085187 95085275 -187108389 - L2 LINE L2 -2 3311 3224 192 77 0 0 chr1 95085275 95085301 -187108363 + (CA)n Simple_repeat Simple_repeat 1 26 0 587 271 51 59 chr1 95085301 95085467 -187108197 - L2 LINE L2 -89 3224 3059 1062 212 277 9 chr1 95085496 95085954 -187107710 - L1MC4 LINE L1 -2 8040 7460 249 156 22 0 chr1 95085954 95085999 -187107665 - MER46B DNA MER2_type 0 236 191 1390 152 53 15 chr1 95086022 95086286 -187107378 - AluSg SINE Alu -36 274 1 1527 122 67 61 chr1 95086286 95086424 -187107240 - MER46B DNA MER2_type -2526 205 187 1923 128 24 3 chr1 95086424 95086712 -187106952 - AluSx SINE Alu -17 295 2 1527 122 67 61 chr1 95086712 95086901 -187106763 - MER46B DNA MER2_type -2544 187 1 753 159 28 34 chr1 95086914 95087090 -187106574 - L1MC4a LINE L1 -440 7368 7194 507 194 136 0 chr1 95087092 95087268 -187106396 - L1MC/D LINE L1 -650 5516 5308 2124 252 59 68 chr1 95087272 95087620 -187106044 - L2 LINE L2 -243 3070 2720 2586 55 0 3 chr1 95087620 95087927 -187105737 + AluY SINE Alu 1 306 -5 2124 252 59 68 chr1 95087927 95088442 -187105222 - L2 LINE L2 -593 2720 2210 425 285 154 26 chr1 95088470 95089012 -187104652 - L1ME LINE L1 -520 5644 5036 316 296 117 62 chr1 95089264 95089504 -187104160 - L1ME LINE L1 -1253 4893 4641 363 265 133 53 chr1 95089540 95090140 -187103524 - L1ME LINE L1 -1621 4525 3878 234 226 120 19 chr1 95090214 95090422 -187103242 - L1ME LINE L1 -2824 3322 3094 228 201 16 8 chr1 95090572 95090653 -187103011 + T-rich Low_complexity Low_complexity 1 81 0 1131 159 4 69 chr1 95091223 95091456 -187102208 - MER20 DNA MER1_type -1 218 1 297 339 91 68 chr1 95091951 95092335 -187101329 - L2 LINE L2 -8 3264 2872 24 32 0 0 chr1 95092615 95092646 -187101018 + AT_rich Low_complexity Low_complexity 1 31 0 2009 147 7 0 chr1 95093193 95093486 -187100178 + AluSx SINE Alu 1 295 -17 209 279 67 10 chr1 95093550 95093654 -187100010 + L3 LINE CR1 1174 1283 -294 459 286 108 42 chr1 95093748 95093961 -187099703 + MIR SINE MIR 29 255 -7 328 261 94 14 chr1 95094035 95094173 -187099491 - MER20B DNA MER1_type -592 191 43 254 326 57 14 chr1 95094254 95094395 -187099269 + MIR SINE MIR 90 236 -26 196 306 0 42 chr1 95094449 95094521 -187099143 + L3 LINE CR1 1473 1541 -36 180 0 0 0 chr1 95094647 95094667 -187098997 + (A)n Simple_repeat Simple_repeat 1 20 0 1532 137 126 0 chr1 95094672 95094927 -187098737 + AluJb SINE Alu 21 307 -5 1171 68 55 0 chr1 95097736 95097899 -187095765 + L1PA11 LINE L1 5999 6170 -4 519 212 147 41 chr1 95097953 95098123 -187095541 + MER5A DNA MER1_type 2 189 0 2126 113 7 3 chr1 95098175 95098484 -187095180 - AluY SINE Alu -1 310 1 374 249 207 5 chr1 95100175 95100368 -187093296 + L1MC/D LINE L1 5569 5800 -2008 1614 96 104 0 chr1 95101148 95101378 -187092286 + AluSx SINE Alu 1 254 -58 389 250 11 0 chr1 95101437 95101529 -187092135 + MER5A DNA MER1_type 14 106 -83 2467 60 10 0 chr1 95103446 95103745 -187089919 - AluSc SINE Alu -7 302 1 383 274 193 59 chr1 95105009 95105315 -187088349 - L2 LINE L2 -17 3255 2909 232 180 140 0 chr1 95105356 95105406 -187088258 - MER94 DNA DNA -47 87 31 203 179 26 64 chr1 95107239 95107317 -187086347 + (CCCG)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr1 95107635 95107656 -187086008 + GC_rich Low_complexity Low_complexity 1 21 0 375 268 137 7 chr1 95108858 95109011 -187084653 + MIR SINE MIR 34 206 -56 222 286 0 0 chr1 95109201 95109257 -187084407 - MIR3 SINE MIR -3 205 150 2113 86 7 20 chr1 95109464 95109765 -187083899 + AluSc SINE Alu 1 297 -12 6851 122 25 15 chr1 95110272 95110950 -187082714 + L1MA3 LINE L1 4370 5040 -1265 2078 128 0 10 chr1 95110950 95111248 -187082416 + AluSx SINE Alu 5 299 -13 6851 122 25 15 chr1 95111248 95111370 -187082294 + L1MA3 LINE L1 5040 5159 -1146 1431 155 105 22 chr1 95111370 95111647 -187082017 + AluJb SINE Alu 1 300 -12 6851 122 25 15 chr1 95111647 95112767 -187080897 + L1MA3 LINE L1 5159 6305 0 2321 96 3 3 chr1 95113133 95113446 -187080218 - AluSp SINE Alu 0 313 1 204 324 248 0 chr1 95113723 95113868 -187079796 - MIR3 SINE MIR -1 207 27 411 366 26 10 chr1 95114142 95114336 -187079328 - MER117 DNA MER1_type 0 197 1 188 35 35 0 chr1 95114570 95114599 -187079065 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2024 83 3 55 chr1 95114604 95114894 -187078770 - AluSp SINE Alu -33 280 6 2312 95 0 10 chr1 95115308 95115612 -187078052 - AluSx SINE Alu -11 301 1 1133 166 67 14 chr1 95115834 95116057 -187077607 - MER46A DNA MER2_type -1 235 1 2192 110 0 10 chr1 95116154 95116454 -187077210 + AluSx SINE Alu 4 300 -12 21 71 0 0 chr1 95117071 95117113 -187076551 + AT_rich Low_complexity Low_complexity 1 42 0 1520 270 62 18 chr1 95117967 95118415 -187075249 + L2 LINE L2 832 1299 -2015 2515 246 40 84 chr1 95118415 95119356 -187074308 + L2 LINE L2 1775 2674 -640 752 259 78 46 chr1 95119392 95119935 -187073729 + L1MC5 LINE L1 7262 7790 -171 673 277 136 27 chr1 95119986 95120420 -187073244 + L2 LINE L2 2702 3187 -126 24 0 0 0 chr1 95120420 95120444 -187073220 + AT_rich Low_complexity Low_complexity 1 24 0 709 192 207 26 chr1 95120491 95120684 -187072980 - MER96B DNA MER1_type? 0 417 190 692 203 14 7 chr1 95122459 95122597 -187071067 + AluJb SINE Alu 168 306 -6 308 174 0 14 chr1 95122604 95122673 -187070991 + GA-rich Low_complexity Low_complexity 3 70 0 1249 289 69 32 chr1 95122816 95123308 -187070356 + L2 LINE L2 2804 3313 0 2062 130 20 0 chr1 95124379 95124672 -187068992 - AluSx SINE Alu -13 299 1 402 273 76 30 chr1 95124939 95125071 -187068593 + L2 LINE L2 3134 3271 -1 246 245 19 0 chr1 95125319 95125372 -187068292 - L3 LINE CR1 -5 1572 1519 21 57 0 0 chr1 95125383 95125418 -187068246 + AT_rich Low_complexity Low_complexity 1 35 0 40 21 0 0 chr1 95125495 95125542 -187068122 + AT_rich Low_complexity Low_complexity 1 47 0 253 315 130 25 chr1 95125849 95126011 -187067653 - L2 LINE L2 -560 2754 2576 * 1009 293 120 48 chr1 95126007 95126435 -187067229 + L2 LINE L2 2823 3288 -25 2052 100 37 0 chr1 95126435 95126732 -187066932 - AluSx SINE Alu 0 309 3 1009 293 120 48 chr1 95126732 95126760 -187066904 + L2 LINE L2 3288 3313 0 262 356 0 0 chr1 95126820 95126893 -187066771 + MIR SINE MIR 28 100 -162 232 182 0 76 chr1 95126893 95126959 -187066705 + MIR SINE MIR 202 262 0 1881 163 7 3 chr1 95128054 95128355 -187065309 + AluJb SINE Alu 1 302 -10 22 35 0 0 chr1 95128361 95128390 -187065274 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 95128450 95128479 -187065185 + AT_rich Low_complexity Low_complexity 1 29 0 307 259 0 12 chr1 95128909 95128990 -187064674 - L1ME4a LINE L1 -69 6052 5973 24 53 0 0 chr1 95128990 95129028 -187064636 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr1 95129068 95129106 -187064558 + AT_rich Low_complexity Low_complexity 1 38 0 2275 101 0 3 chr1 95129199 95129497 -187064167 - AluSx SINE Alu -15 297 1 614 199 23 0 chr1 95129681 95129812 -187063852 - L1M4 LINE L1 -3654 2492 2359 627 251 206 50 chr1 95129908 95130310 -187063354 - L1ME4a LINE L1 -206 5964 5500 21 36 0 0 chr1 95130466 95130494 -187063170 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr1 95130755 95130786 -187062878 + AT_rich Low_complexity Low_complexity 1 31 0 255 257 81 0 chr1 95130802 95130876 -187062788 + L2 LINE L2 3234 3313 0 24 0 0 0 chr1 95130992 95131016 -187062648 + AT_rich Low_complexity Low_complexity 1 24 0 1776 85 137 7 chr1 95131043 95131314 -187062350 - AluSg SINE Alu -4 306 1 2018 97 0 72 chr1 95131327 95131648 -187062016 - AluSx SINE Alu -14 298 1 282 365 39 0 chr1 95131690 95131794 -187061870 + MER91C DNA MER1_type 1 108 -32 309 280 114 23 chr1 95132147 95132279 -187061385 - MIR SINE MIR -112 150 7 2004 129 7 0 chr1 95132623 95132931 -187060733 - AluSx SINE Alu 0 310 1 1681 160 52 3 chr1 95133039 95133326 -187060338 - AluJb SINE Alu -10 302 2 2182 126 0 0 chr1 95133681 95133975 -187059689 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr1 95134958 95134986 -187058678 + AT_rich Low_complexity Low_complexity 1 28 0 221 189 0 0 chr1 95135633 95135670 -187057994 + MIR SINE MIR 74 110 -152 1004 225 40 51 chr1 95135815 95136068 -187057596 - MIR SINE MIR 0 262 13 547 228 83 7 chr1 95136124 95136269 -187057395 - MIR SINE MIR -21 241 86 539 237 191 6 chr1 95136313 95136486 -187057178 + L2 LINE L2 1227 1431 -1883 2007 231 71 20 chr1 95136558 95137265 -187056399 - L1M4 LINE L1 -1225 4921 4179 2420 300 80 60 chr1 95137576 95137916 -187055748 + ERVL LTR ERVL 979 1310 -4454 2169 53 0 23 chr1 95137916 95138217 -187055447 - AluY SINE Alu -17 294 1 2420 300 80 60 chr1 95138217 95138341 -187055323 + ERVL LTR ERVL 1310 1430 -4334 2246 107 10 3 chr1 95138341 95138649 -187055015 - AluSg SINE Alu 0 310 1 2420 300 80 60 chr1 95138649 95140280 -187053384 + ERVL LTR ERVL 1430 3171 -2593 1897 154 0 3 chr1 95140280 95140572 -187053092 - AluJb SINE Alu -21 291 1 2420 300 80 60 chr1 95140572 95140727 -187052937 + ERVL LTR ERVL 3171 3321 -2443 271 227 30 0 chr1 95140737 95140803 -187052861 - L1M1 LINE L1 -545 5757 5690 429 301 86 16 chr1 95140803 95141219 -187052445 - L1ME LINE L1 -511 5651 5200 298 302 76 32 chr1 95141290 95141724 -187051940 - L1ME LINE L1 -3584 2562 2110 227 307 148 25 chr1 95141964 95142241 -187051423 - HAL1b LINE L1 -491 857 547 538 222 177 0 chr1 95142246 95142419 -187051245 + MER58C DNA MER1_type 1 215 0 643 274 71 61 chr1 95142435 95142942 -187050722 - HAL1b LINE L1 -810 538 27 1861 105 23 0 chr1 95143438 95143695 -187049969 - AluSx SINE Alu -11 301 39 1629 103 119 39 chr1 95144326 95144637 -187049027 - MER44D DNA MER2_type 0 609 4 2368 100 123 5 chr1 95144797 95145178 -187048486 - MSTA LTR MaLR -2 426 1 253 293 120 58 chr1 95145371 95145562 -187048102 - L2 LINE L2 -890 2424 2222 955 106 34 22 chr1 95145831 95146010 -187047654 + L1MB3 LINE L1 6001 6181 -2 2374 98 0 0 chr1 95146025 95146330 -187047334 - AluSx SINE Alu -7 305 1 1828 124 21 41 chr1 95147283 95147573 -187046091 + AluSg SINE Alu 3 286 -24 223 47 0 47 chr1 95147573 95147616 -187046048 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 33 0 0 chr1 95148178 95148208 -187045456 + AT_rich Low_complexity Low_complexity 1 30 0 402 300 36 50 chr1 95148377 95148517 -187045147 - L2 LINE L2 -18 3254 3117 1644 135 18 18 chr1 95148528 95148802 -187044862 + AluSx SINE Alu 7 280 -32 23 33 0 0 chr1 95149163 95149193 -187044471 + AT_rich Low_complexity Low_complexity 1 30 0 402 300 36 50 chr1 95149362 95149502 -187044162 - L2 LINE L2 -18 3254 3117 2125 112 3 16 chr1 95149513 95149816 -187043848 + AluSx SINE Alu 7 305 -7 294 322 48 20 chr1 95150539 95150690 -187042974 + MIR SINE MIR 28 188 -63 1071 318 120 12 chr1 95150707 95151444 -187042220 - L2 LINE L2 -15 3298 2476 264 217 61 0 chr1 95151714 95151903 -187041761 + (TA)n Simple_repeat Simple_repeat 1 200 0 246 62 0 0 chr1 95152081 95152113 -187041551 + (T)n Simple_repeat Simple_repeat 1 32 0 34 24 0 0 chr1 95153119 95153160 -187040504 + AT_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr1 95153399 95153442 -187040222 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 95154638 95154659 -187039005 + AT_rich Low_complexity Low_complexity 1 21 0 187 28 56 28 chr1 95154693 95154729 -187038935 + (TAAAAA)n Simple_repeat Simple_repeat 6 42 0 1126 159 14 14 chr1 95154738 95154946 -187038718 + MER3 DNA MER1_type 2 209 0 495 230 209 0 chr1 95155583 95155731 -187037933 - MER5A DNA MER1_type -1 188 10 * 701 257 55 37 chr1 95155730 95155948 -187037716 + MIR SINE MIR 20 241 -21 24 53 0 0 chr1 95156462 95156500 -187037164 + AT_rich Low_complexity Low_complexity 1 38 0 46 45 0 0 chr1 95156689 95156756 -187036908 + AT_rich Low_complexity Low_complexity 1 67 0 22 35 0 0 chr1 95156947 95156976 -187036688 + AT_rich Low_complexity Low_complexity 1 29 0 840 137 0 0 chr1 95157341 95157465 -187036199 + FLAM_C SINE Alu 15 138 -5 384 127 0 0 chr1 95158735 95158790 -187034874 + Tigger5 DNA MER2_type 1 55 -2268 272 232 116 0 chr1 95158810 95158879 -187034785 + Tigger5 DNA MER2_type 2247 2323 0 475 264 22 88 chr1 95159001 95159183 -187034481 + MER5B DNA MER1_type 1 170 -8 2369 83 0 7 chr1 95159763 95160064 -187033600 + AluSc SINE Alu 1 299 -10 2386 109 0 0 chr1 95160586 95160899 -187032765 + AluSq SINE Alu 1 313 0 2326 87 0 10 chr1 95160907 95161216 -187032448 + AluY SINE Alu 1 306 -5 1521 142 71 3 chr1 95161312 95161621 -187032043 + L1MA8 LINE L1 5949 6278 -13 2690 7 0 7 chr1 95161627 95161924 -187031740 - AluYa5 SINE Alu -16 295 1 24 0 0 0 chr1 95161926 95161950 -187031714 + AT_rich Low_complexity Low_complexity 1 24 0 2062 149 0 0 chr1 95161952 95162248 -187031416 + AluJo SINE Alu 1 296 -16 9385 150 88 60 chr1 95162376 95162672 -187030992 + Tigger1 DNA MER2_type 1 287 -2131 1963 154 0 3 chr1 95162672 95162965 -187030699 + AluSx SINE Alu 1 292 -20 9385 150 88 60 chr1 95162965 95163136 -187030528 + Tigger1 DNA MER2_type 287 452 -1966 2044 139 3 0 chr1 95163136 95163446 -187030218 + AluSx SINE Alu 1 311 -1 9385 150 88 60 chr1 95163446 95165328 -187028336 + Tigger1 DNA MER2_type 452 2418 0 358 236 49 8 chr1 95165429 95165552 -187028112 + MER103 DNA DNA 38 165 -1 26 0 0 0 chr1 95166089 95166115 -187027549 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr1 95166806 95166835 -187026829 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 95167009 95167038 -187026626 + AT_rich Low_complexity Low_complexity 1 29 0 410 191 43 11 chr1 95167874 95167968 -187025696 - FLAM_A SINE Alu -19 123 27 1529 182 51 27 chr1 95168088 95168384 -187025280 + AluJo SINE Alu 1 303 -9 1070 119 77 12 chr1 95168385 95168553 -187025111 + AluJb SINE Alu 133 311 -1 210 322 224 21 chr1 95168836 95168979 -187024685 + MIR SINE MIR 20 191 -71 37 23 0 0 chr1 95169101 95169145 -187024519 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr1 95169395 95169421 -187024243 + AT_rich Low_complexity Low_complexity 1 26 0 2056 106 17 20 chr1 95169961 95170254 -187023410 - AluSx SINE Alu -20 292 1 305 318 82 35 chr1 95170785 95170955 -187022709 + MIR3 SINE MIR 31 208 0 185 386 45 25 chr1 95171330 95171532 -187022132 + L2 LINE L2 2754 2959 -355 461 224 164 30 chr1 95171838 95171943 -187021721 + MER5A DNA MER1_type 3 93 -96 2620 105 78 5 chr1 95171943 95172342 -187021322 + MSTA LTR MaLR 1 428 0 461 224 164 30 chr1 95172342 95172401 -187021263 + MER5A DNA MER1_type 93 189 0 636 340 92 28 chr1 95174204 95174750 -187018914 - L2 LINE L2 -277 2995 2410 250 324 0 49 chr1 95174916 95175018 -187018646 - L2 LINE L2 0 3313 3217 239 343 92 38 chr1 95175198 95175513 -187018151 - L2 LINE L2 -342 2972 2641 24 0 0 0 chr1 95175538 95175562 -187018102 + AT_rich Low_complexity Low_complexity 1 24 0 2004 88 0 46 chr1 95175986 95176270 -187017394 - AluSx SINE Alu -9 303 33 987 235 72 34 chr1 95176382 95176731 -187016933 + MER93b LTR ERV1 12 373 0 367 214 47 70 chr1 95177275 95177424 -187016240 + MIR SINE MIR 3 147 -61 333 309 103 78 chr1 95177539 95178024 -187015640 - L1M2 LINE L1 -5746 1103 607 349 174 289 0 chr1 95178248 95178369 -187015295 + HAL1 LINE L1 13 168 -2339 580 256 161 22 chr1 95178609 95178933 -187014731 + HAL1 LINE L1 670 1038 -1469 2244 115 23 0 chr1 95179130 95179435 -187014229 + AluSx SINE Alu 1 312 0 1694 161 13 46 chr1 95179496 95179801 -187013863 + AluJb SINE Alu 1 295 -17 844 108 152 0 chr1 95179925 95180083 -187013581 - MER2 DNA MER2_type -153 192 11 836 191 48 2 chr1 95180202 95180426 -187013238 - MER68 LTR ERV1 0 562 274 480 139 148 19 chr1 95180424 95180532 -187013132 - MER68 LTR ERV1 -440 122 1 * 2163 122 3 0 chr1 95180576 95180919 -187012745 - L1MC1 LINE L1 -216 6117 5774 346 281 143 30 chr1 95180936 95181139 -187012525 - HAL1 LINE L1 -1575 932 707 273 266 0 0 chr1 95181180 95181244 -187012420 - HAL1 LINE L1 -1744 763 700 * 694 64 11 0 chr1 95181240 95181334 -187012330 - L1MC/D LINE L1 -564 5769 5675 1548 169 24 37 chr1 95181340 95181636 -187012028 - AluJo SINE Alu -20 292 1 2303 92 7 0 chr1 95181728 95182022 -187011642 + AluSg SINE Alu 1 296 -14 338 208 31 31 chr1 95182085 95182181 -187011483 + L1 LINE L1 4370 4465 -1681 1261 266 83 11 chr1 95182299 95183288 -187010376 + L1MC/D LINE L1 4616 5687 -524 752 262 121 22 chr1 95183296 95183842 -187009822 + L1M4 LINE L1 3905 4504 -1642 514 257 78 39 chr1 95183869 95184048 -187009616 - L2 LINE L2 -534 2780 2595 251 341 15 0 chr1 95184192 95184324 -187009340 - L2 LINE L2 -720 2594 2461 292 271 115 33 chr1 95184337 95184459 -187009205 + L2 LINE L2 3136 3267 -5 641 152 61 38 chr1 95184627 95184759 -187008905 - AluJo SINE Alu -177 135 1 304 293 86 52 chr1 95185219 95185335 -187008329 + L2 LINE L2 3138 3257 -15 202 146 0 24 chr1 95185511 95185552 -187008112 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 236 295 124 39 chr1 95186229 95186358 -187007306 - MIR SINE MIR -86 176 37 3377 131 65 22 chr1 95186445 95187032 -187006632 + LTR9 LTR ERV1 1 612 0 412 220 37 18 chr1 95187437 95187546 -187006118 + MER5A DNA MER1_type 1 111 -78 * 934 210 11 6 chr1 95187543 95187724 -187005940 - MER5A DNA MER1_type -7 182 1 572 241 84 42 chr1 95187972 95188163 -187005501 - MIR SINE MIR -39 223 25 2303 111 0 0 chr1 95188187 95188493 -187005171 - AluSq SINE Alu -7 306 1 2530 118 39 50 chr1 95188682 95188807 -187004857 - MER61C LTR ERV1 0 434 309 2232 128 13 0 chr1 95188807 95189113 -187004551 + AluSx SINE Alu 1 310 -2 2530 118 39 50 chr1 95189113 95189426 -187004238 - MER61C LTR ERV1 -125 309 1 1029 324 49 50 chr1 95189696 95190394 -187003270 - L3 LINE CR1 -89 1488 792 1799 164 144 43 chr1 95190741 95191062 -187002602 - MLT1C LTR MaLR 0 467 91 2324 101 0 3 chr1 95191062 95191358 -187002306 + AluSg SINE Alu 1 295 -15 1799 164 144 43 chr1 95191358 95191458 -187002206 - MLT1C LTR MaLR -376 91 3 214 306 0 0 chr1 95191596 95191658 -187002006 + (ATGGTG)n Simple_repeat Simple_repeat 5 66 0 250 360 35 0 chr1 95191913 95191999 -187001665 + MIR SINE MIR 29 117 -91 22 0 0 0 chr1 95192537 95192559 -187001105 + AT_rich Low_complexity Low_complexity 1 22 0 11676 196 39 14 chr1 95192840 95194951 -186998713 + L1PA11 LINE L1 1502 4493 -3091 2211 91 7 0 chr1 95194951 95195236 -186998428 + AluSg SINE Alu 1 287 -23 11676 196 39 14 chr1 95195236 95195985 -186997679 + L1PA11 LINE L1 4493 5222 -2362 1612 173 3 60 chr1 95195989 95196289 -186997375 + AluSx SINE Alu 1 283 -29 1132 130 0 24 chr1 95196289 95196445 -186997219 + AluSg/x SINE Alu 144 297 -15 9089 144 32 2 chr1 95196445 95198814 -186994850 + L1PA11 LINE L1 5213 7607 -5 1132 130 0 24 chr1 95198814 95198826 -186994838 + AluSg/x SINE Alu 297 308 -4 33 0 0 0 chr1 95199209 95199242 -186994422 + AT_rich Low_complexity Low_complexity 1 33 0 304 292 219 0 chr1 95199398 95199535 -186994129 + L2 LINE L2 2560 2726 -588 665 203 0 0 chr1 95199543 95199661 -186994003 + FLAM_A SINE Alu 4 121 -12 216 250 59 15 chr1 95199700 95199768 -186993896 + L2 LINE L2 2736 2806 -508 818 227 12 65 chr1 95199774 95200021 -186993643 - MLT1A1 LTR MaLR -112 253 20 452 305 50 0 chr1 95200169 95200314 -186993350 - MIR SINE MIR -61 147 37 204 310 0 70 chr1 95201842 95201913 -186991751 - L2 LINE L2 0 3272 3207 1277 162 77 42 chr1 95203060 95203319 -186990345 + AluJb SINE Alu 22 289 -23 198 0 0 0 chr1 95203319 95203341 -186990323 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 1845 147 21 7 chr1 95204511 95204797 -186988867 + AluJb SINE Alu 1 290 -22 2329 95 0 0 chr1 95204859 95205154 -186988510 - AluSc SINE Alu -14 295 1 1113 202 5 0 chr1 95205262 95205450 -186988214 + MER5A DNA MER1_type 1 189 0 196 139 0 0 chr1 95205777 95205813 -186987851 + L2 LINE L2 3226 3261 -11 610 289 64 18 chr1 95205916 95206134 -186987530 - MIR SINE MIR -12 250 23 1639 170 18 0 chr1 95206134 95206411 -186987253 - AluJb SINE Alu 0 312 31 6036 91 30 4 chr1 95206411 95207170 -186986494 + LTR19C LTR ERV1 1 779 0 24303 206 55 60 chr1 95207199 95208031 -186985633 + LTR19C-int LTR ERV1 30 864 -6132 228 122 0 49 chr1 95208031 95208072 -186985592 + Tigger3(Golem) DNA MER2_type 1085 1123 -1906 24303 206 55 60 chr1 95208072 95210152 -186983512 + LTR19C-int LTR ERV1 864 2952 -4044 3765 69 16 0 chr1 95210152 95210603 -186983061 + LTR22A LTR ERVK 1 458 0 24303 206 55 60 chr1 95210603 95214021 -186979643 + LTR19C-int LTR ERV1 2952 6369 -627 2117 123 75 31 chr1 95214021 95214370 -186979294 + THE1B LTR MaLR 1 364 0 24303 206 55 60 chr1 95214370 95214995 -186978669 + LTR19C-int LTR ERV1 6369 6995 -1 5437 104 60 5 chr1 95214998 95215548 -186978116 + LTR19C LTR ERV1 1 603 -176 2454 84 7 0 chr1 95215548 95215847 -186977817 - AluSc SINE Alu -8 301 1 5437 104 60 5 chr1 95215847 95216035 -186977629 + LTR19C LTR ERV1 603 779 0 2237 108 0 0 chr1 95216754 95217049 -186976615 + AluSq SINE Alu 1 295 -18 333 176 14 27 chr1 95217256 95217321 -186976343 - MLT1J LTR MaLR 0 511 448 1482 132 95 8 chr1 95217321 95217700 -186975964 - LOR1a LTR ERV1 -1 496 1 707 252 116 72 chr1 95217700 95218012 -186975652 - MLT1J LTR MaLR -83 428 103 4839 140 68 53 chr1 95218316 95218704 -186974960 + L1MA6 LINE L1 4890 5270 -1030 2042 130 0 0 chr1 95218704 95218988 -186974676 + AluSq SINE Alu 27 310 -3 4839 140 68 53 chr1 95218988 95219097 -186974567 + L1MA6 LINE L1 5270 5376 -924 207 100 0 0 chr1 95219097 95219127 -186974537 + (TA)n Simple_repeat Simple_repeat 2 31 0 4839 140 68 53 chr1 95219127 95220014 -186973650 + L1MA6 LINE L1 5376 6300 0 722 347 52 30 chr1 95220030 95220534 -186973130 - L2 LINE L2 -685 2629 2115 2019 127 3 31 chr1 95222363 95222685 -186970979 + AluSq SINE Alu 1 313 0 289 220 17 0 chr1 95223085 95223144 -186970520 - L1ME4a LINE L1 -74 6047 5988 954 210 49 89 chr1 95223157 95223504 -186970160 - MER4D LTR ERV1 -8 895 563 2188 93 0 0 chr1 95223511 95223833 -186969831 - AluSc SINE Alu 0 322 1 24 67 0 0 chr1 95224411 95224456 -186969208 + GC_rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chr1 95224586 95224611 -186969053 + (TG)n Simple_repeat Simple_repeat 2 26 0 452 187 112 70 chr1 95224629 95224816 -186968848 - L1ME4a LINE L1 0 6121 5927 2324 96 0 3 chr1 95225095 95225398 -186968266 + AluSq SINE Alu 1 302 -11 551 130 10 0 chr1 95225901 95226001 -186967663 + (TC)n Simple_repeat Simple_repeat 2 102 0 589 113 0 0 chr1 95226256 95226336 -186967328 - MADE1 DNA Mariner 0 80 1 380 244 23 61 chr1 95226471 95226602 -186967062 + MIR SINE MIR 70 195 -67 236 329 43 5 chr1 95226778 95226904 -186966760 - MIR SINE MIR -69 139 22 2146 91 4 0 chr1 95227536 95227810 -186965854 - AluSp SINE Alu -38 275 1 1424 175 205 9 chr1 95229118 95229449 -186964215 + MSTD LTR MaLR 1 396 0 1742 196 15 3 chr1 95230109 95230638 -186963026 + Cheshire DNA MER1_type 1800 2417 -3 276 314 0 0 chr1 95230647 95230717 -186962947 + L2 LINE L2 3238 3307 -6 22 0 0 0 chr1 95230867 95230889 -186962775 + AT_rich Low_complexity Low_complexity 1 22 0 273 280 30 0 chr1 95231009 95231109 -186962555 - L1MC4 LINE L1 -1355 6687 6585 320 252 7 97 chr1 95231309 95231464 -186962200 - L2 LINE L2 -141 3172 3032 493 303 84 20 chr1 95231481 95231831 -186961833 + L1ME LINE L1 5352 5739 -382 288 0 0 0 chr1 95231920 95231952 -186961712 + (TG)n Simple_repeat Simple_repeat 1 32 0 2499 143 67 18 chr1 95232573 95233022 -186960642 + MER101 LTR ERV1 4 474 0 1456 182 3 69 chr1 95233157 95233476 -186960188 + AluJb SINE Alu 1 298 -14 1674 203 15 99 chr1 95233763 95234290 -186959374 + MLT1E LTR MaLR 111 593 0 1408 173 35 3 chr1 95234658 95234941 -186958723 + MER33 DNA MER1_type 1 292 -32 331 297 61 20 chr1 95236335 95236483 -186957181 + L2 LINE L2 2604 2757 -557 189 256 0 0 chr1 95236624 95236663 -186957001 + L2 LINE L2 2985 3023 -249 217 239 0 0 chr1 95236790 95236836 -186956828 + L2 LINE L2 3263 3308 -5 2043 131 13 19 chr1 95236965 95237279 -186956385 - AluJb SINE Alu 0 312 1 1089 143 0 44 chr1 95237360 95237542 -186956122 - FRAM SINE Alu 0 176 3 393 317 64 20 chr1 95237549 95237751 -186955913 + L2 LINE L2 2107 2317 -997 217 260 52 26 chr1 95237807 95237863 -186955801 + L2 LINE L2 2310 2370 -944 2161 197 118 65 chr1 95237863 95238437 -186955227 - MER77 LTR ERV1 0 605 1 217 260 52 26 chr1 95238437 95238457 -186955207 + L2 LINE L2 2370 2388 -926 311 323 81 0 chr1 95239084 95239208 -186954456 + L2 LINE L2 3179 3312 -1 4181 117 73 33 chr1 95239605 95240304 -186953360 - LTR8A LTR ERV1 0 727 1 562 285 53 10 chr1 95240567 95240774 -186952890 + MIR SINE MIR 47 262 0 2282 96 3 0 chr1 95241032 95241323 -186952341 + AluY SINE Alu 1 292 -19 3160 178 59 90 chr1 95241602 95242359 -186951305 - MER50 LTR ERV1 0 734 1 4039 112 22 48 chr1 95242670 95242951 -186950713 - MER4B LTR ERV1 0 610 323 2180 92 7 11 chr1 95242951 95243265 -186950399 - AluSg SINE Alu 0 313 1 4039 112 22 48 chr1 95243265 95243608 -186950056 - MER4B LTR ERV1 -287 323 1 244 184 0 0 chr1 95243697 95243746 -186949918 - MER94 DNA DNA -49 85 37 2094 135 0 0 chr1 95243918 95244214 -186949450 + AluSx SINE Alu 1 296 -16 2213 102 0 0 chr1 95244483 95244797 -186948867 - AluSq SINE Alu 0 314 1 1630 152 11 4 chr1 95245681 95245944 -186947720 + AluJb SINE Alu 1 265 -47 207 274 16 48 chr1 95246279 95246341 -186947323 + MIR SINE MIR 49 108 -154 204 310 62 70 chr1 95247675 95247804 -186945860 + L2 LINE L2 3144 3271 -1 21 57 0 0 chr1 95249372 95249407 -186944257 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr1 95249774 95249799 -186943865 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 95251065 95251087 -186942577 + AT_rich Low_complexity Low_complexity 1 22 0 884 192 53 0 chr1 95251103 95251254 -186942410 + AluJb SINE Alu 1 159 -153 279 136 85 0 chr1 95251795 95251854 -186941810 - MIR SINE MIR -46 216 153 23 0 0 0 chr1 95251939 95251962 -186941702 + AT_rich Low_complexity Low_complexity 1 23 0 555 291 107 22 chr1 95252148 95252419 -186941245 + L2 LINE L2 2479 2772 -542 463 226 130 28 chr1 95252431 95252608 -186941056 + L1MC5 LINE L1 7717 7911 -50 388 257 99 0 chr1 95253475 95253576 -186940088 + L2 LINE L2 3162 3272 0 2260 69 10 3 chr1 95254050 95254340 -186939324 - AluY SINE Alu -19 292 1 1482 186 39 11 chr1 95254369 95254654 -186939010 + AluJo SINE Alu 1 293 -19 2211 109 7 0 chr1 95254782 95255076 -186938588 + AluSx SINE Alu 1 296 -16 21 82 0 0 chr1 95255129 95255178 -186938486 + AT_rich Low_complexity Low_complexity 1 49 0 1587 191 0 3 chr1 95255489 95255776 -186937888 + AluJb SINE Alu 20 305 -7 2219 103 0 0 chr1 95255776 95256067 -186937597 + AluSg SINE Alu 1 291 -19 2468 66 0 28 chr1 95256070 95256390 -186937274 + AluY SINE Alu 1 311 0 446 297 133 63 chr1 95257109 95257537 -186936127 + HAL1 LINE L1 885 1342 -1165 399 238 126 56 chr1 95257551 95257820 -186935844 + HAL1 LINE L1 1397 1684 -823 271 237 90 39 chr1 95258156 95258312 -186935352 + HAL1b LINE L1 754 917 -431 308 279 124 81 chr1 95258372 95258670 -186934994 + HAL1 LINE L1 2182 2492 -15 30 27 0 0 chr1 95259985 95260022 -186933642 + AT_rich Low_complexity Low_complexity 1 37 0 320 264 150 36 chr1 95260565 95260785 -186932879 + L1ME4a LINE L1 5866 6110 -11 952 35 0 0 chr1 95260918 95261034 -186932630 - L1PB1 LINE L1 -23 6128 6013 1627 175 11 21 chr1 95261177 95261500 -186932164 + AluSx SINE Alu 1 320 0 2374 88 0 13 chr1 95262841 95263148 -186930516 + AluSc SINE Alu 1 303 -6 821 131 39 15 chr1 95263216 95263346 -186930318 + FLAM_C SINE Alu 1 133 0 1620 106 5 0 chr1 95263881 95264098 -186929566 + AluSp SINE Alu 71 288 -25 2134 98 3 57 chr1 95264098 95264414 -186929250 + AluSc SINE Alu 1 299 -10 198 398 34 42 chr1 95264692 95264810 -186928854 + L2 LINE L2 2931 3047 -225 601 212 70 129 chr1 95265070 95265311 -186928353 + MIR SINE MIR 10 236 -26 524 269 59 71 chr1 95265966 95266204 -186927460 + MIR SINE MIR 28 262 0 841 219 0 16 chr1 95266243 95266426 -186927238 + MER58A DNA MER1_type 37 216 -8 266 248 105 23 chr1 95266682 95266815 -186926849 - Tigger8 DNA MER2_type -174 492 349 373 284 91 23 chr1 95266862 95267038 -186926626 - Tigger8 DNA MER2_type -426 240 53 240 196 43 0 chr1 95268365 95268411 -186925253 - L2 LINE L2 -4 3309 3262 404 285 96 36 chr1 95269763 95270012 -186923652 - MARNA DNA Mariner -53 533 270 23 54 0 0 chr1 95270208 95270245 -186923419 + AT_rich Low_complexity Low_complexity 1 37 0 464 320 125 68 chr1 95270517 95271189 -186922475 + L2 LINE L2 2353 3067 -205 208 309 49 12 chr1 95271223 95271304 -186922360 + L2 LINE L2 3139 3222 -50 239 200 0 18 chr1 95272377 95272432 -186921232 + A-rich Low_complexity Low_complexity 1 54 0 1008 147 135 19 chr1 95273253 95273512 -186920152 + L1MA8 LINE L1 6002 6290 -1 209 252 243 10 chr1 95273638 95273741 -186919923 + MIR3 SINE MIR 30 156 -52 188 139 0 23 chr1 95274223 95274266 -186919398 + (CATA)n Simple_repeat Simple_repeat 3 44 0 233 271 150 22 chr1 95275054 95275325 -186918339 + L1ME2 LINE L1 5483 5793 -328 581 205 87 32 chr1 95275554 95275739 -186917925 - Charlie8 DNA MER1_type -2141 276 82 516 236 75 6 chr1 95275765 95275926 -186917738 + L1ME2 LINE L1 5983 6154 -10 2069 107 21 3 chr1 95276067 95276358 -186917306 + AluSx SINE Alu 3 298 -14 840 304 164 26 chr1 95276363 95277106 -186916558 - L2 LINE L2 -4 3309 2448 229 310 27 87 chr1 95277432 95277616 -186916048 + MIR SINE MIR 89 261 -1 3627 83 31 110 chr1 95278720 95279404 -186914260 + MER4A LTR ERV1 1 630 -34 317 258 92 50 chr1 95279930 95280037 -186913627 - MIR3 SINE MIR -69 139 25 2273 103 26 0 chr1 95280037 95280339 -186913325 - AluSx SINE Alu -2 310 1 317 258 92 50 chr1 95280339 95280351 -186913313 - MIR3 SINE MIR -183 25 15 1512 222 101 41 chr1 95280797 95281330 -186912334 + MLT1F1 LTR MaLR 4 567 0 408 229 184 0 chr1 95281521 95281630 -186912034 + L2 LINE L2 3139 3267 -5 234 231 87 19 chr1 95282953 95283057 -186910607 + MIR SINE MIR 123 233 -29 943 171 101 37 chr1 95283076 95283293 -186910371 - MIR SINE MIR -31 231 1 436 237 59 146 chr1 95283593 95283880 -186909784 + MIR SINE MIR 1 262 0 281 183 21 65 chr1 95284578 95284671 -186908993 + L1MC/D LINE L1 5699 5787 -2021 295 284 161 37 chr1 95285599 95285761 -186907903 + MIR3 SINE MIR 20 201 -7 2211 101 7 7 chr1 95285829 95286125 -186907539 - AluSg SINE Alu -14 296 1 565 270 113 10 chr1 95286205 95286409 -186907255 - MIR SINE MIR 0 262 38 754 66 260 0 chr1 95286475 95286616 -186907048 - L1PA8 LINE L1 -8 6164 5990 629 175 208 0 chr1 95287483 95287637 -186906027 + MER5A DNA MER1_type 4 189 0 466 210 99 82 chr1 95287902 95288135 -186905529 + L1ME3A LINE L1 5608 5844 -326 267 292 156 7 chr1 95288757 95288911 -186904753 - MIR SINE MIR -20 242 66 217 254 33 115 chr1 95289011 95289133 -186904531 + MIR3 SINE MIR 93 204 -4 22 35 0 0 chr1 95289495 95289524 -186904140 + AT_rich Low_complexity Low_complexity 1 29 0 410 300 211 11 chr1 95290377 95290557 -186903107 - MIR SINE MIR -16 246 31 182 345 112 9 chr1 95290778 95290894 -186902770 + L2 LINE L2 3139 3266 -6 194 271 86 14 chr1 95291369 95291439 -186902225 + L2 LINE L2 3194 3268 -4 402 253 128 107 chr1 95293237 95293935 -186899729 + L1M4c LINE L1 526 1060 -5789 1756 167 127 23 chr1 95295110 95295584 -186898080 - Charlie1b DNA MER1_type 0 523 1 279 312 168 15 chr1 95295620 95295831 -186897833 + MLT1L LTR MaLR 182 359 -256 13964 115 56 15 chr1 95295831 95296880 -186896784 + Tigger1 DNA MER2_type 1 1005 -1413 1882 127 65 14 chr1 95296880 95297172 -186896492 - AluJb SINE Alu -5 307 1 13964 115 56 15 chr1 95297172 95298444 -186895220 + Tigger1 DNA MER2_type 1005 2418 0 279 312 168 15 chr1 95298444 95298565 -186895099 + MLT1L LTR MaLR 359 565 -50 2404 147 49 2 chr1 95298640 95299049 -186894615 - MSTA LTR MaLR 0 428 1 997 273 87 31 chr1 95299177 95299793 -186893871 + L2 LINE L2 2644 3303 -10 231 279 0 0 chr1 95299796 95299864 -186893800 - MARNA DNA Mariner -62 524 457 29 47 0 0 chr1 95299949 95299992 -186893672 + AT_rich Low_complexity Low_complexity 1 43 0 225 274 27 0 chr1 95300128 95300201 -186893463 - MARNA DNA Mariner -361 225 151 255 309 211 15 chr1 95300304 95300640 -186893024 + L2 LINE L2 2625 3022 -291 319 268 36 36 chr1 95300681 95300793 -186892871 + L2 LINE L2 3159 3270 -43 955 248 32 3 chr1 95300815 95301125 -186892539 + L1M4c LINE L1 1981 2299 -4551 878 188 7 0 chr1 95301128 95301277 -186892387 + FRAM SINE Alu 1 150 -26 189 107 0 0 chr1 95302771 95302799 -186890865 + (CA)n Simple_repeat Simple_repeat 1 28 0 558 0 0 0 chr1 95303072 95303134 -186890530 + (CA)n Simple_repeat Simple_repeat 1 62 0 216 0 0 0 chr1 95303133 95303157 -186890507 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 218 213 64 0 chr1 95303463 95303510 -186890154 - L2 LINE L2 -2 3311 3262 351 214 145 28 chr1 95303655 95303800 -186889864 + MLT1L LTR MaLR 452 613 -2 789 221 48 22 chr1 95305629 95305831 -186887833 - MIR SINE MIR -13 249 42 844 188 83 9 chr1 95305988 95306206 -186887458 + Charlie2 DNA MER1_type 37 270 -2512 3238 204 66 20 chr1 95306279 95307144 -186886520 + Charlie2 DNA MER1_type 1958 2862 0 252 306 122 10 chr1 95307705 95307803 -186885861 + MIR SINE MIR 36 144 -64 366 262 56 0 chr1 95307855 95307962 -186885702 - L2 LINE L2 -1 3312 3200 619 306 70 40 chr1 95308402 95308774 -186884890 - L2 LINE L2 -439 2875 2493 2511 238 120 113 chr1 95308975 95310800 -186882864 + L2 LINE L2 289 2125 -1189 745 190 136 15 chr1 95310805 95311007 -186882657 + MLT1E1 LTR MaLR 5 239 -415 527 303 26 13 chr1 95311577 95311732 -186881932 - MLT1K LTR MaLR 0 588 432 415 301 128 76 chr1 95313465 95313871 -186879793 - MLT1K LTR MaLR -155 433 7 294 216 52 72 chr1 95314784 95314881 -186878783 + MLT1K LTR MaLR 4 98 -490 702 187 81 0 chr1 95314914 95315037 -186878627 - FLAM_C SINE Alu 0 133 1 364 318 56 31 chr1 95315081 95315276 -186878388 + MLT1K LTR MaLR 134 333 -255 181 209 0 104 chr1 95315783 95315850 -186877814 - L2 LINE L2 -3158 156 97 608 332 93 165 chr1 95316057 95316396 -186877268 - L2 LINE L2 -33 3280 2918 2404 170 73 51 chr1 95316396 95316461 -186877203 - MLT1D LTR MaLR 0 505 443 1938 106 0 76 chr1 95316461 95316614 -186877050 + AluSg1 SINE Alu 1 118 -209 2548 59 0 3 chr1 95316614 95316917 -186876747 + AluY SINE Alu 1 302 -9 1938 106 0 76 chr1 95316917 95317113 -186876551 + AluSg1 SINE Alu 118 327 0 2404 170 73 51 chr1 95317113 95317540 -186876124 - MLT1D LTR MaLR -62 443 1 608 332 93 165 chr1 95317540 95317752 -186875912 - L2 LINE L2 -395 2918 2587 228 351 130 0 chr1 95317755 95317909 -186875755 + MIR SINE MIR 89 262 0 223 257 14 29 chr1 95317975 95318045 -186875619 - MIR SINE MIR -72 136 68 349 321 148 5 chr1 95318198 95318407 -186875257 + MIR SINE MIR 24 262 0 723 228 54 35 chr1 95319713 95319972 -186873692 + L1MC5 LINE L1 7351 7614 -347 * 5847 166 14 17 chr1 95319961 95320311 -186873353 + L1MA9 LINE L1 4986 5336 -976 2470 76 0 3 chr1 95320311 95320614 -186873050 + AluY SINE Alu 1 302 -9 5847 166 14 17 chr1 95320614 95321590 -186872074 + L1MA9 LINE L1 5336 6312 0 487 209 19 15 chr1 95321628 95321833 -186871831 + L1MC5 LINE L1 7688 7926 -35 235 316 13 25 chr1 95321959 95322038 -186871626 + MIR SINE MIR 185 262 0 208 218 146 0 chr1 95323418 95323473 -186870191 - L2 LINE L2 0 3272 3210 2033 98 9 14 chr1 95325107 95325648 -186868016 - MER4A LTR ERV1 0 664 1 237 233 0 0 chr1 95325656 95325699 -186867965 - LTR67 LTR ERVL -392 165 123 2232 164 47 17 chr1 95326093 95326495 -186867169 + MLT2D LTR ERVL 1 414 0 25 0 0 0 chr1 95326553 95326578 -186867086 + AT_rich Low_complexity Low_complexity 1 25 0 196 333 37 25 chr1 95327712 95327793 -186865871 - L2 LINE L2 -32 3240 3159 1185 146 156 0 chr1 95328535 95328734 -186864930 - MER30 DNA MER1_type 0 230 1 226 224 56 149 chr1 95328922 95329029 -186864635 + MLT1L LTR MaLR 2 98 -517 274 245 112 119 chr1 95329031 95329199 -186864465 + MLT1J LTR MaLR 104 271 -240 2542 100 121 21 chr1 95329199 95329588 -186864076 + MSTA LTR MaLR 1 428 0 274 245 112 119 chr1 95329588 95329713 -186863951 + MLT1J LTR MaLR 271 395 -116 1572 178 56 22 chr1 95329983 95330304 -186863360 - MLT2D LTR ERVL 0 414 83 17986 171 27 10 chr1 95330942 95333329 -186860335 - L1PA15 LINE L1 -4 6161 3815 1639 113 5 5 chr1 95333329 95333551 -186860113 - AluSq SINE Alu -91 222 1 17986 171 27 10 chr1 95333551 95335397 -186858267 - L1PA15 LINE L1 -2350 3815 1853 2470 89 0 13 chr1 95335397 95335711 -186857953 - AluY SINE Alu -1 310 1 17986 171 27 10 chr1 95335711 95335924 -186857740 - L1PA15 LINE L1 -4312 1853 1645 811 224 54 54 chr1 95336534 95336614 -186857050 - L1M4 LINE L1 -2360 3786 3707 2049 140 7 0 chr1 95336614 95336907 -186856757 - AluSx SINE Alu -17 295 1 811 224 54 54 chr1 95336907 95337067 -186856597 - L1M4 LINE L1 -2438 3708 3546 502 123 22 184 chr1 95337109 95337288 -186856376 - MER53 DNA DNA 0 189 40 876 172 0 0 chr1 95337289 95337434 -186856230 + L1MB7 LINE L1 5647 5791 -393 2190 165 116 44 chr1 95337434 95337907 -186855757 - MLT2B1 LTR ERVL -1 519 13 2056 180 8 0 chr1 95337918 95338285 -186855379 + L1MB7 LINE L1 5789 6158 -26 317 209 30 30 chr1 95338344 95338411 -186855253 - LTR67 LTR ERVL -377 180 114 1692 166 14 7 chr1 95338477 95338760 -186854904 + AluJo SINE Alu 21 305 -7 387 273 55 9 chr1 95338795 95338905 -186854759 + MIR SINE MIR 27 141 -121 739 239 6 18 chr1 95338918 95339081 -186854583 + L2 LINE L2 2613 2773 -541 301 335 129 53 chr1 95339455 95340121 -186853543 + L1M4c LINE L1 918 1634 -4750 1021 196 151 22 chr1 95340789 95341101 -186852563 + MLT1D LTR MaLR 4 355 -150 310 279 0 27 chr1 95341250 95341361 -186852303 - MIR SINE MIR -71 137 30 202 296 52 70 chr1 95341694 95341809 -186851855 - L2 LINE L2 -2914 400 288 454 260 119 60 chr1 95342424 95342659 -186851005 - MIR SINE MIR 0 262 14 271 311 16 49 chr1 95342715 95342837 -186850827 + L2 LINE L2 2539 2656 -658 2216 186 41 55 chr1 95343165 95343677 -186849987 + MLT1D LTR MaLR 1 505 0 289 261 57 23 chr1 95343711 95343799 -186849865 + L2 LINE L2 2934 3024 -248 219 300 11 78 chr1 95343935 95344025 -186849639 + L2 LINE L2 3224 3307 -6 2232 103 0 3 chr1 95344221 95344522 -186849142 - AluY SINE Alu -11 300 1 1508 150 9 91 chr1 95344642 95344962 -186848702 + AluJo SINE Alu 1 294 -18 352 179 284 52 chr1 95345335 95345402 -186848262 + MER5B DNA MER1_type 4 54 -124 2300 104 7 0 chr1 95345402 95345699 -186847965 - AluSq SINE Alu -14 299 1 352 179 284 52 chr1 95345699 95345765 -186847899 + MER5B DNA MER1_type 54 168 -10 396 281 58 8 chr1 95347692 95347813 -186845851 + L2 LINE L2 3146 3272 0 607 201 52 0 chr1 95348520 95348654 -186845010 + MER112 DNA MER1_type 114 254 -6 274 272 37 25 chr1 95349170 95349251 -186844413 + L2 LINE L2 3176 3257 -15 352 216 68 0 chr1 95349353 95349427 -186844237 + MER2 DNA MER2_type 42 120 -225 896 185 124 0 chr1 95349427 95349605 -186844059 + L1PB4 LINE L1 5953 6152 -4 804 194 152 42 chr1 95349605 95349842 -186843822 + MER2 DNA MER2_type 83 345 0 262 22 89 0 chr1 95349946 95349991 -186843673 + CT-rich Low_complexity Low_complexity 1 49 0 793 117 45 0 chr1 95349991 95350102 -186843562 - FLAM_C SINE Alu -17 126 11 215 316 128 0 chr1 95350133 95350250 -186843414 - L2 LINE L2 0 3272 3141 2276 106 3 0 chr1 95350377 95350680 -186842984 - AluSg SINE Alu -6 304 1 552 280 158 18 chr1 95350956 95351369 -186842295 + L2 LINE L2 2791 3313 0 27 0 0 0 chr1 95352678 95352705 -186840959 + AT_rich Low_complexity Low_complexity 1 27 0 180 254 0 0 chr1 95352807 95352866 -186840798 + (TA)n Simple_repeat Simple_repeat 1 59 0 322 257 101 9 chr1 95354285 95354394 -186839270 - L2 LINE L2 -1 3312 3194 206 105 26 0 chr1 95354606 95354644 -186839020 + GA-rich Low_complexity Low_complexity 1 39 0 359 335 18 18 chr1 95355161 95355328 -186838336 + L3 LINE CR1 1338 1504 -73 469 215 94 78 chr1 95355338 95355529 -186838135 + MER58C DNA MER1_type 21 214 -1 270 0 0 0 chr1 95356559 95356589 -186837075 + (CA)n Simple_repeat Simple_repeat 2 31 0 226 277 139 0 chr1 95357885 95357986 -186835678 + L2 LINE L2 3158 3272 0 231 61 0 0 chr1 95358058 95358091 -186835573 + (TG)n Simple_repeat Simple_repeat 2 34 0 1342 160 13 4 chr1 95358124 95358355 -186835309 + L1MC1 LINE L1 6095 6327 -6 323 257 59 0 chr1 95358616 95358717 -186834947 - MIR SINE MIR -32 230 124 201 74 0 0 chr1 95359064 95359091 -186834573 + (CAA)n Simple_repeat Simple_repeat 1 27 0 275 231 167 28 chr1 95359737 95359845 -186833819 - L2 LINE L2 -2 3270 3148 1925 147 0 26 chr1 95360290 95360597 -186833067 - AluSx SINE Alu 0 312 14 480 300 22 22 chr1 95360883 95361063 -186832601 + MER117 DNA MER1_type 17 196 -1 1917 167 3 13 chr1 95361122 95361428 -186832236 - AluJo SINE Alu -9 303 1 219 103 0 0 chr1 95362058 95362097 -186831567 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2376 169 94 15 chr1 95362800 95363268 -186830396 - MLT1D LTR MaLR 0 505 1 401 255 50 35 chr1 95364230 95364371 -186829293 + MIR SINE MIR 12 154 -108 310 297 36 36 chr1 95364470 95364679 -186828985 + MLT1L LTR MaLR 80 391 -224 269 320 104 0 chr1 95364720 95364845 -186828819 + MLT1L LTR MaLR 478 615 0 627 163 10 0 chr1 95364976 95365074 -186828590 - AluJb SINE Alu -13 299 201 2202 108 0 7 chr1 95365084 95365389 -186828275 - AluSg1 SINE Alu -6 303 1 1810 157 0 7 chr1 95365391 95365665 -186827999 - AluJo SINE Alu -18 294 23 858 251 43 63 chr1 95366505 95366999 -186826665 + L1MC5 LINE L1 6414 6909 -899 341 239 58 58 chr1 95367060 95367215 -186826449 + L1ME3A LINE L1 6012 6166 -4 26 0 0 0 chr1 95368058 95368084 -186825580 + AT_rich Low_complexity Low_complexity 1 26 0 336 209 14 48 chr1 95368100 95368397 -186825267 + (TTATA)n Simple_repeat Simple_repeat 1 287 0 281 126 204 0 chr1 95368440 95368543 -186825121 + MER5C DNA MER1_type 199 322 -2 1267 257 92 28 chr1 95368543 95369201 -186824463 + L1ME3A LINE L1 5136 5851 -319 518 203 32 6 chr1 95369613 95369726 -186823938 - MLT1A2 LTR MaLR -276 98 1 1862 172 0 0 chr1 95370489 95370779 -186822885 - AluJb SINE Alu -22 290 1 1666 165 119 35 chr1 95371654 95372084 -186821580 + MLT1D LTR MaLR 2 467 -38 542 255 138 102 chr1 95372348 95372796 -186820868 - MLT1J LTR MaLR 0 615 28 437 214 159 35 chr1 95373144 95373289 -186820375 - MIR SINE MIR -70 192 30 3395 204 89 10 chr1 95373694 95374561 -186819103 - L1MC4a LINE L1 -196 7612 6678 182 309 136 0 chr1 95374648 95374729 -186818935 - MIR SINE MIR -164 98 7 471 259 31 72 chr1 95375520 95375713 -186817951 + MIR3 SINE MIR 9 193 -15 190 305 69 30 chr1 95376857 95376988 -186816676 + MIR3 SINE MIR 14 149 -59 372 243 86 26 chr1 95377260 95377412 -186816252 + MER117 DNA MER1_type 2 162 -35 191 320 0 13 chr1 95377480 95377555 -186816109 - MIR SINE MIR -115 93 20 292 203 0 0 chr1 95379368 95379427 -186814237 - L2 LINE L2 -1 3271 3213 23 33 0 0 chr1 95380467 95380497 -186813167 + AT_rich Low_complexity Low_complexity 1 30 0 1931 126 3 41 chr1 95381011 95381335 -186812329 + AluSx SINE Alu 1 313 0 356 308 34 8 chr1 95381767 95381884 -186811780 - L2 LINE L2 -3 3310 3191 3694 117 9 9 chr1 95381886 95382414 -186811250 + MER1A DNA MER1_type 1 528 -1 253 295 137 26 chr1 95382426 95382653 -186811011 - L2 LINE L2 -124 3189 2938 403 275 30 48 chr1 95382712 95382879 -186810785 - MIR SINE MIR -13 249 86 1305 60 88 11 chr1 95382893 95383075 -186810589 - MER30 DNA MER1_type -34 196 1 209 303 0 40 chr1 95383075 95383151 -186810513 - MIR SINE MIR -174 88 16 2582 171 51 48 chr1 95384126 95384694 -186808970 + L1MA9 LINE L1 5705 6274 -38 290 141 64 39 chr1 95384953 95385031 -186808633 + MIR SINE MIR 125 204 -58 201 74 0 0 chr1 95385155 95385182 -186808482 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 298 198 74 25 chr1 95386680 95386761 -186806903 - L2 LINE L2 -1 3271 3187 238 262 60 0 chr1 95387794 95387878 -186805786 + MIR SINE MIR 170 258 -4 216 336 38 23 chr1 95388016 95388147 -186805517 + L2 LINE L2 3163 3295 -18 651 297 43 13 chr1 95389649 95390023 -186803641 + L1ME3A LINE L1 2485 2869 -3277 1317 127 32 32 chr1 95390033 95390254 -186803410 + L1MB5 LINE L1 5945 6165 -9 2398 91 3 0 chr1 95390290 95390586 -186803078 - AluSg SINE Alu -13 297 1 294 253 11 23 chr1 95390608 95390695 -186802969 + L1ME3A LINE L1 6068 6153 -17 602 270 158 32 chr1 95390928 95391428 -186802236 + L1ME3A LINE L1 3002 3564 -2582 1658 76 14 5 chr1 95391701 95391924 -186801740 - L1PA7 LINE L1 0 6154 5930 2072 239 124 16 chr1 95392098 95392800 -186800864 - LTR50 LTR ERVL -17 778 1 1666 272 75 55 chr1 95393642 95393897 -186799767 + L1ME3A LINE L1 3639 3887 -2259 2076 140 3 3 chr1 95393897 95394204 -186799460 - AluSx SINE Alu -5 307 1 1666 272 75 55 chr1 95394204 95394961 -186798703 + L1ME3A LINE L1 3887 4681 -1465 189 0 0 0 chr1 95394961 95394982 -186798682 + (TG)n Simple_repeat Simple_repeat 1 21 0 1666 272 75 55 chr1 95394982 95395159 -186798505 + L1ME3A LINE L1 4681 4853 -1293 829 268 70 57 chr1 95395384 95396324 -186797340 + L1ME3A LINE L1 4931 5883 -287 786 96 45 96 chr1 95396472 95396650 -186797014 - MER53 DNA DNA -20 169 1 189 0 0 0 chr1 95396910 95396931 -186796733 + (TC)n Simple_repeat Simple_repeat 2 22 0 271 243 19 37 chr1 95397458 95397565 -186796099 + L2 LINE L2 3208 3312 -1 1967 138 45 0 chr1 95397780 95398071 -186795593 - AluSx SINE Alu -8 304 1 262 200 117 0 chr1 95398325 95398385 -186795279 - L2 LINE L2 -2 3311 3245 373 236 87 31 chr1 95398393 95398520 -186795144 - MIR SINE MIR -10 252 119 471 312 158 0 chr1 95398578 95398857 -186794807 - L1ME LINE L1 -348 5822 5500 1906 227 89 24 chr1 95398949 95399442 -186794222 - MLT1E LTR MaLR -1 592 68 22 35 0 0 chr1 95400035 95400064 -186793600 + AT_rich Low_complexity Low_complexity 1 29 0 1539 229 53 35 chr1 95400873 95401327 -186792337 - MLT1C LTR MaLR 0 467 6 414 0 0 0 chr1 95401606 95401652 -186792012 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 258 176 0 0 chr1 95401653 95401704 -186791960 + (TA)n Simple_repeat Simple_repeat 2 52 0 1392 177 16 20 chr1 95402007 95402256 -186791408 + AluJo SINE Alu 27 274 -38 225 94 0 0 chr1 95402256 95402288 -186791376 + (GA)n Simple_repeat Simple_repeat 2 33 0 384 22 0 0 chr1 95402288 95402333 -186791331 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 1063 198 19 9 chr1 95402333 95402545 -186791119 + AluJo SINE Alu 99 312 0 1120 93 0 15 chr1 95402578 95402782 -186790882 + (GAAA)n Simple_repeat Simple_repeat 4 202 0 350 297 38 60 chr1 95402801 95402986 -186790678 + MIR SINE MIR 80 260 -2 2019 117 3 11 chr1 95403000 95403308 -186790356 + AluSx SINE Alu 1 306 0 1221 140 81 0 chr1 95403398 95403462 -186790202 + L1MA10 LINE L1 6094 6151 -183 234 105 0 0 chr1 95403462 95403500 -186790164 + (CA)n Simple_repeat Simple_repeat 1 38 0 1221 140 81 0 chr1 95403500 95403657 -186790007 + L1MA10 LINE L1 6151 6333 -1 2343 243 138 7 chr1 95403725 95404867 -186788797 - L2 LINE L2 -2 3311 2010 25 0 0 0 chr1 95405055 95405080 -186788584 + AT_rich Low_complexity Low_complexity 1 25 0 2309 96 3 3 chr1 95405368 95405671 -186787993 - AluSx SINE Alu -9 303 1 208 348 35 26 chr1 95405710 95405825 -186787839 + L2 LINE L2 3195 3310 -3 528 296 86 23 chr1 95407175 95407395 -186786269 + MIR SINE MIR 23 256 -6 399 238 168 0 chr1 95407549 95407650 -186786014 - MER5B DNA MER1_type -3 175 58 2770 278 148 19 chr1 95407661 95408890 -186784774 + L2 LINE L2 1128 2514 -800 855 234 98 0 chr1 95408978 95409183 -186784481 - MIR SINE MIR -33 229 5 2155 111 0 0 chr1 95409960 95410248 -186783416 - AluSc SINE Alu -21 288 1 312 27 0 0 chr1 95410339 95410376 -186783288 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2360 84 0 0 chr1 95410378 95410665 -186782999 - AluSg SINE Alu -23 287 1 352 213 118 44 chr1 95411127 95411263 -186782401 + LTR33A LTR ERVL 376 521 -2 1871 156 23 13 chr1 95411416 95411724 -186781940 + AluJb SINE Alu 1 311 -1 25 0 0 0 chr1 95412293 95412318 -186781346 + AT_rich Low_complexity Low_complexity 1 25 0 2015 136 3 14 chr1 95412320 95412614 -186781050 - AluSx SINE Alu -21 291 1 2151 136 0 7 chr1 95415283 95415592 -186778072 - AluSx SINE Alu -5 307 1 297 0 0 0 chr1 95415986 95416019 -186777645 + (TA)n Simple_repeat Simple_repeat 1 33 0 285 98 0 0 chr1 95416020 95416061 -186777603 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 294 0 22 chr1 95417323 95417415 -186776249 - MIR SINE MIR -59 203 114 184 324 162 50 chr1 95417449 95417671 -186775993 - L3 LINE CR1 -1072 505 259 753 239 119 4 chr1 95417880 95418106 -186775558 - MIR SINE MIR 0 262 11 264 269 172 8 chr1 95418178 95418312 -186775352 - L2 LINE L2 -5 3308 3153 322 264 143 48 chr1 95418421 95418610 -186775054 + MIR SINE MIR 3 209 -53 354 317 58 8 chr1 95418799 95418919 -186774745 + MIR SINE MIR 21 146 -62 2086 129 10 3 chr1 95419372 95419675 -186773989 + AluSx SINE Alu 1 305 -7 265 341 66 33 chr1 95419715 95419897 -186773767 - L3 LINE CR1 -216 1361 1174 279 0 0 0 chr1 95420116 95420147 -186773517 + (CA)n Simple_repeat Simple_repeat 1 31 0 185 128 0 26 chr1 95420610 95420649 -186773015 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 982 283 12 0 chr1 95420829 95421073 -186772591 + MIR SINE MIR 2 248 -14 304 251 109 38 chr1 95421680 95421863 -186771801 - L1MCa LINE L1 -3961 2465 2270 439 272 83 24 chr1 95422183 95422352 -186771312 + MER5A DNA MER1_type 1 179 -10 462 339 58 16 chr1 95422824 95423066 -186770598 - MIR SINE MIR -8 254 3 918 188 88 6 chr1 95423524 95423705 -186769959 + MER105 DNA DNA 2 197 -7 855 167 84 62 chr1 95423708 95423935 -186769729 - MER112 DNA MER1_type 0 260 29 283 350 31 25 chr1 95424364 95424524 -186769140 + MER5A DNA MER1_type 29 189 0 332 300 184 26 chr1 95424532 95424912 -186768752 - L2 LINE L2 -672 2642 2203 394 308 39 0 chr1 95427214 95427344 -186766320 - MER117 DNA MER1_type -60 137 3 405 302 177 19 chr1 95427344 95427559 -186766105 + MIR SINE MIR 10 258 -4 325 300 64 21 chr1 95427695 95427835 -186765829 + L2 LINE L2 3125 3270 -2 204 385 48 6 chr1 95427832 95427998 -186765666 + MIR3 SINE MIR 36 208 0 * 246 238 24 60 chr1 95428174 95428258 -186765406 - L2 LINE L2 -8 3264 3184 226 73 49 0 chr1 95429009 95429050 -186764614 + (TA)n Simple_repeat Simple_repeat 2 44 0 343 225 116 51 chr1 95429383 95429521 -186764143 + L1ME4a LINE L1 5773 5919 -202 280 313 42 10 chr1 95431759 95431855 -186761809 - L2 LINE L2 -8 3264 3166 184 279 70 58 chr1 95431842 95431928 -186761736 + L2 LINE L2 2966 3052 -261 * 252 0 0 0 chr1 95432011 95432039 -186761625 + (T)n Simple_repeat Simple_repeat 1 28 0 363 289 17 43 chr1 95432120 95432281 -186761383 - MER5A DNA MER1_type -20 158 1 258 385 50 39 chr1 95433275 95433535 -186760129 + L2 LINE L2 2985 3247 -25 958 203 6 0 chr1 95434168 95434326 -186759338 + FRAM SINE Alu 1 159 -7 226 178 11 67 chr1 95435458 95435548 -186758116 + L1MCa LINE L1 1983 2067 -4359 390 261 126 0 chr1 95436184 95436303 -186757361 + MIR SINE MIR 72 205 -57 830 243 20 49 chr1 95436415 95436662 -186757002 + MIR SINE MIR 6 245 -17 344 383 14 21 chr1 95436978 95437119 -186756545 + L2 LINE L2 3133 3272 0 1716 295 78 70 chr1 95437572 95438783 -186754881 - L3 LINE CR1 0 1577 357 243 0 0 0 chr1 95438833 95438860 -186754804 + (T)n Simple_repeat Simple_repeat 1 27 0 2018 158 0 3 chr1 95438881 95439184 -186754480 + AluJb SINE Alu 1 302 -10 192 212 0 0 chr1 95439577 95439610 -186754054 - MIR SINE MIR -62 146 114 486 191 18 9 chr1 95439678 95439788 -186753876 - L1MA6 LINE L1 0 6300 6190 2145 115 10 3 chr1 95439852 95440147 -186753517 - AluSg SINE Alu -13 297 1 573 328 88 49 chr1 95441236 95441770 -186751894 + L2 LINE L2 2407 2961 -353 399 235 67 17 chr1 95441854 95441973 -186751691 - MIR SINE MIR -23 239 115 1598 185 31 3 chr1 95442218 95442504 -186751160 + AluJo SINE Alu 1 294 -18 216 0 0 0 chr1 95442508 95442532 -186751132 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 476 304 191 0 chr1 95442548 95442742 -186750922 + MIR SINE MIR 2 232 -30 1638 165 14 11 chr1 95442766 95443051 -186750613 - AluJo SINE Alu -26 286 1 312 316 15 73 chr1 95444846 95445052 -186748612 + MLT1K LTR MaLR 379 572 -16 959 229 127 36 chr1 95446613 95446998 -186746666 + L2 LINE L2 2894 3313 0 335 289 140 39 chr1 95447197 95447553 -186746111 + L1ME4a LINE L1 5494 5885 -236 199 290 11 75 chr1 95447925 95448018 -186745646 + MIR SINE MIR 105 191 -71 264 245 96 11 chr1 95448105 95448199 -186745465 - MIR SINE MIR -51 211 110 2544 72 3 0 chr1 95451920 95452227 -186741437 + AluSc SINE Alu 1 308 -1 758 182 88 22 chr1 95452757 95452938 -186740726 + MER45 DNA AcHobo 1 193 -847 488 161 11 21 chr1 95452921 95453014 -186740650 + MER45 DNA AcHobo 1448 1539 -42 * 1512 161 3 96 chr1 95453101 95453436 -186740228 + AluJb SINE Alu 1 304 -8 350 221 255 7 chr1 95453847 95453992 -186739672 + MIR SINE MIR 65 245 -17 520 280 161 85 chr1 95454218 95454640 -186739024 - L2 LINE L2 -6 3266 2813 1967 95 9 98 chr1 95454877 95455204 -186738460 - AluSg SINE Alu -12 298 1 223 242 0 0 chr1 95455767 95455800 -186737864 + A-rich Low_complexity Low_complexity 1 36 -26 946 144 0 0 chr1 95455800 95455932 -186737732 + FLAM_C SINE Alu 2 133 0 223 242 0 0 chr1 95455932 95455960 -186737704 + A-rich Low_complexity Low_complexity 35 62 0 913 261 16 20 chr1 95460079 95460324 -186733340 - MIR SINE MIR 0 262 19 598 263 176 0 chr1 95460569 95460774 -186732890 + MIR SINE MIR 20 260 -2 206 228 43 43 chr1 95460848 95460940 -186732724 + MIR SINE MIR 165 256 -6 2037 124 6 22 chr1 95461025 95461339 -186732325 + AluSx SINE Alu 1 309 -3 236 241 218 23 chr1 95461413 95461500 -186732164 + MIR SINE MIR 34 137 -71 296 391 92 28 chr1 95461551 95461909 -186731755 - L2 LINE L2 -51 3221 2841 622 263 168 0 chr1 95462334 95462543 -186731121 + MER112 DNA MER1_type 8 251 -9 233 242 32 0 chr1 95463098 95463160 -186730504 - L3 LINE CR1 -10 1567 1504 2326 103 7 0 chr1 95463560 95463862 -186729802 - AluSx SINE Alu -6 306 3 371 154 0 15 chr1 95465166 95465231 -186728433 + FAM SINE Alu 89 152 -23 * 1316 174 116 48 chr1 95465227 95465538 -186728126 - MER1B DNA MER1_type -7 332 1 192 262 16 49 chr1 95465603 95465664 -186728000 - MER5A DNA MER1_type -76 113 55 201 39 0 0 chr1 95465668 95465694 -186727970 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1792 171 13 3 chr1 95466236 95466545 -186727119 + AluJo SINE Alu 1 312 0 9067 154 20 13 chr1 95467151 95467499 -186726165 + L1PB1 LINE L1 3407 3751 -2400 2096 139 51 20 chr1 95467499 95467852 -186725812 - THE1B LTR MaLR 0 364 1 12104 84 8 0 chr1 95467852 95469419 -186724245 - THE1B-int LTR MaLR 0 1580 1 2080 126 46 52 chr1 95469419 95469495 -186724169 - THE1B LTR MaLR 0 364 289 2129 118 16 26 chr1 95469495 95469801 -186723863 + AluSq SINE Alu 1 303 -10 2080 126 46 52 chr1 95469801 95470090 -186723574 - THE1B LTR MaLR -75 289 1 9067 154 20 13 chr1 95470090 95471896 -186721768 + L1PB1 LINE L1 3751 5593 -558 1797 151 43 33 chr1 95471896 95472200 -186721464 - AluSx SINE Alu -5 307 1 9067 154 20 13 chr1 95472200 95472763 -186720901 + L1PB1 LINE L1 5593 6151 0 2159 105 4 0 chr1 95472836 95473140 -186720524 + AluSg SINE Alu 5 309 0 2128 120 0 7 chr1 95474300 95474627 -186719037 - AluSx SINE Alu 0 326 2 770 251 43 25 chr1 95474946 95475033 -186718631 - MIR SINE MIR -21 241 157 1276 135 43 26 chr1 95475033 95475263 -186718401 - MER46A DNA MER2_type -1 235 2 770 251 43 25 chr1 95475263 95475410 -186718254 - MIR SINE MIR -105 157 3 1607 283 26 96 chr1 95475818 95475885 -186717779 + L1M2c LINE L1 1 71 -7138 207 0 0 0 chr1 95475885 95475908 -186717756 + (CA)n Simple_repeat Simple_repeat 1 23 0 1607 283 26 96 chr1 95475908 95476562 -186717102 + L1M2c LINE L1 71 1055 -6154 3226 198 25 35 chr1 95476793 95477428 -186716236 + L1M2c LINE L1 1736 2376 -4833 1862 156 16 3 chr1 95477428 95477735 -186715929 + AluSx SINE Alu 1 311 -1 3226 198 25 35 chr1 95477735 95477933 -186715731 + L1M2c LINE L1 2376 2574 -4635 2420 75 0 23 chr1 95477933 95478241 -186715423 + AluY SINE Alu 1 301 -10 3226 198 25 35 chr1 95478241 95478748 -186714916 + L1M2c LINE L1 2574 3038 -4171 771 241 105 9 chr1 95479200 95479428 -186714236 + MIR SINE MIR 8 257 -5 1448 150 4 9 chr1 95479888 95480115 -186713549 - AluJb SINE Alu 0 312 87 1912 244 136 50 chr1 95480115 95480756 -186712908 + L2 LINE L2 1820 2405 -908 2098 142 0 0 chr1 95480756 95481066 -186712598 + AluJb SINE Alu 1 310 -2 1912 244 136 50 chr1 95481066 95481139 -186712525 + L2 LINE L2 2405 2470 -843 875 78 86 0 chr1 95481139 95481267 -186712397 + MER85 DNA T2_type 1 139 0 1912 244 136 50 chr1 95481267 95481404 -186712260 + L2 LINE L2 2470 2594 -719 1540 118 8 21 chr1 95481404 95481641 -186712023 + AluSg/x SINE Alu 77 310 0 1912 244 136 50 chr1 95481641 95482178 -186711486 + L2 LINE L2 2594 3310 -3 23 0 0 0 chr1 95484370 95484393 -186709271 + AT_rich Low_complexity Low_complexity 1 23 0 663 293 58 29 chr1 95484639 95484941 -186708723 - L1ME4a LINE L1 -246 5875 5560 2358 102 0 0 chr1 95484941 95485236 -186708428 - AluSx SINE Alu -17 295 1 663 293 58 29 chr1 95485236 95485278 -186708386 - L1ME4a LINE L1 -561 5560 5521 1310 208 110 27 chr1 95485391 95485728 -186707936 + MLT1A1 LTR MaLR 1 365 0 186 314 0 0 chr1 95487349 95487400 -186706264 + MIR SINE MIR 64 114 -148 804 227 100 0 chr1 95487432 95487652 -186706012 - MIR SINE MIR -18 244 3 604 226 58 34 chr1 95488591 95488799 -186704865 + L2 LINE L2 2925 3137 -176 558 81 0 0 chr1 95488836 95488917 -186704747 - L1MC3 LINE L1 -236 7572 7454 281 236 0 0 chr1 95488955 95489010 -186704654 + L2 LINE L2 3252 3306 -7 4250 161 30 46 chr1 95489333 95490217 -186703447 + L1MC3 LINE L1 6915 7784 -1 2228 109 3 3 chr1 95490567 95490878 -186702786 - AluSx SINE Alu -1 311 1 22 0 0 0 chr1 95491488 95491510 -186702154 + AT_rich Low_complexity Low_complexity 1 22 0 2298 113 0 0 chr1 95491725 95492025 -186701639 - AluSx SINE Alu -12 300 1 1457 192 115 28 chr1 95492153 95492517 -186701147 + MSTD LTR MaLR 1 396 0 449 289 154 10 chr1 95493123 95493324 -186700340 + LTR33 LTR ERVL 29 258 -263 421 254 24 16 chr1 95493350 95493476 -186700188 + LTR33 LTR ERVL 327 453 -68 285 346 0 9 chr1 95494431 95494538 -186699126 + Tigger8 DNA MER2_type 2 107 -559 248 372 54 23 chr1 95494597 95494726 -186698938 + L2 LINE L2 3133 3265 -7 2455 97 0 0 chr1 95496125 95496436 -186697228 - AluY SINE Alu 0 311 1 542 248 66 53 chr1 95496438 95496664 -186697000 + MLT1J LTR MaLR 34 262 -249 270 275 50 0 chr1 95496732 95496812 -186696852 + MER5C DNA MER1_type 36 119 -205 266 113 0 145 chr1 95496812 95496874 -186696790 + L1MA5A LINE L1 6200 6252 -45 1611 83 5 5 chr1 95496874 95497078 -186696586 + AluSp SINE Alu 2 205 -108 213 195 0 0 chr1 95498034 95498075 -186695589 + G-rich Low_complexity Low_complexity 2 42 0 318 308 65 37 chr1 95498075 95498289 -186695375 + MIR SINE MIR 31 250 -12 4736 179 8 16 chr1 95498686 95499585 -186694079 + L1 LINE L1 4018 4911 -1235 599 14 0 0 chr1 95499585 95499655 -186694009 + L1PA5 LINE L1 6083 6153 -1 4736 179 8 16 chr1 95499655 95499691 -186693973 + L1 LINE L1 4911 4946 -1200 396 220 22 0 chr1 95499740 95499831 -186693833 + MIR SINE MIR 96 188 -74 209 299 69 11 chr1 95499904 95499991 -186693673 + MIR SINE MIR 117 208 -54 2338 107 40 31 chr1 95500702 95501262 -186692402 + LTR10E LTR ERV1 1 623 -10 1034 183 16 16 chr1 95501893 95502084 -186691580 + MER20 DNA MER1_type 29 219 0 506 229 22 101 chr1 95502158 95502337 -186691327 + L1MC4 LINE L1 5453 5617 -2191 254 286 0 0 chr1 95502337 95502393 -186691271 + polypyrimidine Low_complexity Low_complexity 1 56 0 1196 199 120 3 chr1 95502635 95502936 -186690728 + L1MC4 LINE L1 6466 6801 -1241 397 237 10 0 chr1 95502922 95503019 -186690645 - L1MA9 LINE L1 -219 6093 5996 * 717 160 30 148 chr1 95503027 95503070 -186690594 + L1MA9 LINE L1 6066 6112 -200 1603 180 14 10 chr1 95503070 95503359 -186690305 + AluJo SINE Alu 1 290 -22 717 160 30 148 chr1 95503359 95503552 -186690112 + L1MA9 LINE L1 6112 6274 -38 2855 248 92 53 chr1 95503565 95503908 -186689756 + L1MC4 LINE L1 6789 7117 -925 2018 125 3 39 chr1 95503908 95504219 -186689445 + AluJb SINE Alu 1 300 -12 2855 248 92 53 chr1 95504219 95504931 -186688733 + L1MC4 LINE L1 7117 7885 -157 22 0 0 0 chr1 95504947 95504969 -186688695 + AT_rich Low_complexity Low_complexity 1 22 0 291 54 0 0 chr1 95504969 95505006 -186688658 + (CA)n Simple_repeat Simple_repeat 2 38 0 240 167 0 0 chr1 95505006 95505054 -186688610 + GA-rich Low_complexity Low_complexity 1 48 0 210 296 85 68 chr1 95506672 95506848 -186686816 - MIR SINE MIR -50 212 34 488 249 249 5 chr1 95507225 95507430 -186686234 - MIR SINE MIR -6 256 2 2118 95 0 3 chr1 95508757 95509087 -186684577 + AluSg SINE Alu 1 329 0 21 0 0 0 chr1 95510081 95510102 -186683562 + GC_rich Low_complexity Low_complexity 1 21 0 203 138 0 0 chr1 95510827 95510856 -186682808 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 1616 42 16 0 chr1 95511241 95511430 -186682234 + AluSg/x SINE Alu 89 280 -30 189 0 0 0 chr1 95511938 95511959 -186681705 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1947 148 0 7 chr1 95512388 95512678 -186680986 + AluSx SINE Alu 5 292 -20 1969 148 0 7 chr1 95513720 95514017 -186679647 + AluJb SINE Alu 18 312 0 21 0 0 0 chr1 95514401 95514422 -186679242 + AT_rich Low_complexity Low_complexity 1 21 0 2365 96 0 0 chr1 95514422 95514723 -186678941 + AluY SINE Alu 1 301 -10 2167 114 0 7 chr1 95514739 95515046 -186678618 + AluY SINE Alu 1 305 -6 704 276 56 6 chr1 95515053 95515370 -186678294 + MLT1I LTR MaLR 63 409 0 3973 104 6 11 chr1 95515378 95515907 -186677757 - MER1A DNA MER1_type -1 526 1 2233 100 0 26 chr1 95516407 95516716 -186676948 + AluSc SINE Alu 1 301 -8 2304 90 0 0 chr1 95517816 95518105 -186675559 - AluSc SINE Alu -20 289 1 5498 237 105 54 chr1 95518316 95518589 -186675075 + L1ME2 LINE L1 2456 2713 -3451 1222 97 6 11 chr1 95518589 95518765 -186674899 - L1PB1 LINE L1 -1 6150 5976 5498 237 105 54 chr1 95518765 95519058 -186674606 + L1ME2 LINE L1 2713 2989 -3175 293 224 0 53 chr1 95519058 95519134 -186674530 - Tigger5 DNA MER2_type 0 2323 2252 5498 237 105 54 chr1 95519134 95519510 -186674154 + L1ME2 LINE L1 2989 3344 -2820 5783 94 80 0 chr1 95519510 95520275 -186673389 + LTR12 LTR ERV1 1 826 0 5498 237 105 54 chr1 95520275 95520800 -186672864 + L1ME2 LINE L1 3344 3840 -2324 1970 124 7 0 chr1 95520800 95521111 -186672553 - AluSx SINE Alu 0 313 1 5498 237 105 54 chr1 95521111 95521140 -186672524 + L1ME2 LINE L1 3840 3866 -2298 1729 176 3 20 chr1 95521140 95521446 -186672218 + AluJo SINE Alu 1 301 -11 5498 237 105 54 chr1 95521446 95521828 -186671836 + L1ME2 LINE L1 3866 4227 -1937 2573 60 6 6 chr1 95521828 95522145 -186671519 + L1PA8 LINE L1 5848 6164 -8 5498 237 105 54 chr1 95522145 95523607 -186670057 + L1ME2 LINE L1 4227 6059 -105 648 186 133 16 chr1 95524091 95524255 -186669409 + MER5A DNA MER1_type 4 189 0 7015 78 0 2 chr1 95525192 95526427 -186667237 + L1PA8A LINE L1 4899 6131 0 567 222 99 56 chr1 95526491 95526743 -186666921 + L1MEd LINE L1 977 1239 -4880 343 302 137 0 chr1 95527492 95527740 -186665924 + L1MEd LINE L1 2098 2379 -3750 286 216 0 57 chr1 95528317 95528405 -186665259 + MIR SINE MIR 130 212 -50 1793 158 3 0 chr1 95528782 95529066 -186664598 - AluJb SINE Alu -27 285 1 388 265 106 15 chr1 95529158 95529290 -186664374 - LTR16B LTR ERVL -320 144 1 1904 219 72 16 chr1 95529291 95529776 -186663888 + L1MC4 LINE L1 7331 7842 -200 338 204 11 75 chr1 95530538 95530631 -186663033 + MIR SINE MIR 61 147 -115 336 291 19 6 chr1 95530603 95530720 -186662944 - MIR SINE MIR -69 139 35 * 226 236 55 0 chr1 95530913 95530968 -186662696 + MIR SINE MIR 29 86 -176 240 250 125 14 chr1 95531090 95531162 -186662502 - L2 LINE L2 -19 3253 3174 2356 96 3 0 chr1 95531191 95531493 -186662171 - AluSg SINE Alu -7 303 1 372 212 0 0 chr1 95531576 95531642 -186662022 - AluJb SINE Alu -10 292 227 1082 169 0 17 chr1 95531644 95531821 -186661843 - AluJb SINE Alu -138 174 1 23 0 0 0 chr1 95531875 95531898 -186661766 + AT_rich Low_complexity Low_complexity 1 23 0 2194 105 3 7 chr1 95531922 95532227 -186661437 - AluSx SINE Alu -8 304 1 1192 65 0 0 chr1 95533352 95533491 -186660173 - MER85 DNA T2_type 0 139 1 1847 158 103 3 chr1 95534477 95534788 -186658876 - MER2 DNA MER2_type 0 344 3 304 192 33 25 chr1 95534791 95534911 -186658753 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 225 111 0 48 chr1 95535301 95535364 -186658300 + (CATGC)n Simple_repeat Simple_repeat 5 64 0 266 297 149 14 chr1 95535475 95535623 -186658041 + L2 LINE L2 3143 3310 -3 3045 123 21 41 chr1 95536793 95537305 -186656359 + L1MC1 LINE L1 5832 6333 0 26 0 0 0 chr1 95537334 95537360 -186656304 + AT_rich Low_complexity Low_complexity 1 26 0 708 245 119 0 chr1 95537431 95537590 -186656074 - MER45A DNA AcHobo 0 178 1 3138 129 64 115 chr1 95537863 95538522 -186655142 + MER44D DNA MER2_type 2 626 -79 2481 96 47 0 chr1 95538522 95538866 -186654798 - MER46B DNA MER2_type -1 235 1 420 265 0 0 chr1 95538866 95538947 -186654717 + Tigger7 DNA MER2_type 2405 2485 -2 285 146 0 0 chr1 95539242 95539290 -186654374 + (TA)n Simple_repeat Simple_repeat 1 48 0 2655 58 0 3 chr1 95539290 95539602 -186654062 - AluY SINE Alu 0 311 1 345 275 281 0 chr1 95540273 95540451 -186653213 - MIR SINE MIR -3 259 32 221 308 65 65 chr1 95540607 95540714 -186652950 - MIR3 SINE MIR -90 118 12 1606 97 0 0 chr1 95541186 95541393 -186652271 - AluSg/x SINE Alu -10 302 96 2056 138 3 10 chr1 95541407 95541718 -186651946 + AluSc SINE Alu 1 309 0 1973 147 14 0 chr1 95542720 95543013 -186650651 - AluJb SINE Alu -15 297 1 186 43 0 0 chr1 95543727 95543750 -186649914 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1547 106 26 9 chr1 95543817 95544044 -186649620 + L1PA8 LINE L1 5942 6172 0 239 283 308 17 chr1 95544252 95544372 -186649292 - MIR3 SINE MIR -21 187 33 883 173 0 0 chr1 95544614 95544747 -186648917 - FLAM_C SINE Alu 0 133 1 1906 147 0 23 chr1 95546810 95547110 -186646554 + AluJo SINE Alu 3 295 -17 1660 179 7 0 chr1 95548569 95548849 -186644815 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr1 95548855 95548879 -186644785 + (CA)n Simple_repeat Simple_repeat 2 25 0 2047 122 10 3 chr1 95549042 95549338 -186644326 - AluSx SINE Alu -14 298 1 330 289 58 19 chr1 95550973 95551077 -186642587 - L2 LINE L2 -5 3267 3160 207 250 23 0 chr1 95551444 95551488 -186642176 + MIR SINE MIR 106 150 -112 1083 205 66 44 chr1 95552263 95552580 -186641084 + MER33 DNA MER1_type 1 324 0 443 245 0 11 chr1 95552829 95552923 -186640741 + MIR SINE MIR 15 107 -155 216 261 91 45 chr1 95553734 95553822 -186639842 + MIR SINE MIR 150 241 -21 348 227 292 26 chr1 95556792 95556946 -186636718 - MIR SINE MIR -46 216 22 2467 77 0 3 chr1 95558040 95558351 -186635313 + AluY SINE Alu 1 310 -1 21 0 0 0 chr1 95558385 95558406 -186635258 + AT_rich Low_complexity Low_complexity 1 21 0 361 286 135 37 chr1 95558793 95559038 -186634626 + L2 LINE L2 2837 3105 -208 918 250 26 9 chr1 95559136 95559368 -186634296 + MIR SINE MIR 1 236 -26 2628 129 44 2 chr1 95559460 95559871 -186633793 + MSTC LTR MaLR 1 428 0 291 396 7 20 chr1 95560526 95560675 -186632989 + MIR SINE MIR 89 235 -27 2228 92 4 0 chr1 95561078 95561386 -186632278 + AluSg SINE Alu 1 309 0 2110 120 0 7 chr1 95562546 95562873 -186630791 - AluSx SINE Alu 0 326 2 863 247 43 25 chr1 95563192 95563279 -186630385 - MIR SINE MIR -21 241 157 1269 130 39 26 chr1 95563279 95563510 -186630154 - MER46A DNA MER2_type -1 235 2 863 247 43 25 chr1 95563510 95563657 -186630007 - MIR SINE MIR -105 157 3 1399 300 19 89 chr1 95564065 95564132 -186629532 + L1M2c LINE L1 1 71 -7138 207 0 0 0 chr1 95564132 95564155 -186629509 + (CA)n Simple_repeat Simple_repeat 1 23 0 1399 300 19 89 chr1 95564155 95564809 -186628855 + L1M2c LINE L1 71 1055 -6154 2978 175 24 30 chr1 95565040 95565675 -186627989 + L1M2c LINE L1 1736 2374 -4835 1933 155 10 3 chr1 95565675 95565984 -186627680 + AluSx SINE Alu 1 311 -1 2978 175 24 30 chr1 95565984 95566182 -186627482 + L1M2c LINE L1 2374 2572 -4637 2407 71 0 23 chr1 95566182 95566490 -186627174 + AluY SINE Alu 1 301 -10 2978 175 24 30 chr1 95566490 95566831 -186626833 + L1M2c LINE L1 2572 3038 -4171 436 204 186 41 chr1 95567939 95568111 -186625553 + L2 LINE L2 3116 3312 -1 2051 119 0 45 chr1 95568616 95568926 -186624738 + AluSx SINE Alu 1 296 -16 2902 177 88 42 chr1 95569375 95570095 -186623569 + L1MC4 LINE L1 7187 7951 -91 2351 90 7 0 chr1 95570095 95570394 -186623270 + AluSq SINE Alu 1 301 -12 2902 177 88 42 chr1 95570394 95570491 -186623173 + L1MC4 LINE L1 7951 8042 0 248 326 71 14 chr1 95570596 95570737 -186622927 - MIR3 SINE MIR -45 163 15 202 186 23 0 chr1 95570770 95570813 -186622851 + L2 LINE L2 3254 3297 -16 246 280 56 47 chr1 95570864 95570971 -186622693 + L2 LINE L2 3167 3274 -39 730 217 55 87 chr1 95571235 95571488 -186622176 - MIR SINE MIR -3 259 15 913 291 200 25 chr1 95571561 95571767 -186621897 - L2 LINE L2 0 3313 3144 2751 86 19 8 chr1 95571767 95572138 -186621526 + THE1C LTR MaLR 1 375 0 913 291 200 25 chr1 95572138 95572572 -186621092 - L2 LINE L2 -169 3144 2555 377 256 139 9 chr1 95573650 95573865 -186619799 + L2 LINE L2 2815 3057 -256 332 108 0 84 chr1 95573876 95573959 -186619705 + L1MA7 LINE L1 6216 6291 0 808 181 98 46 chr1 95574173 95574570 -186619094 + MER110A LTR ERV1 37 477 -14 566 258 68 6 chr1 95574575 95574738 -186618926 + L2 LINE L2 3140 3312 -1 198 71 0 0 chr1 95574898 95574926 -186618738 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 535 179 132 0 chr1 95574926 95575032 -186618632 - AluJb SINE Alu -192 120 1 24 32 0 0 chr1 95575138 95575169 -186618495 + AT_rich Low_complexity Low_complexity 1 31 0 219 190 17 17 chr1 95576344 95576402 -186617262 + (CA)n Simple_repeat Simple_repeat 2 59 0 190 276 126 23 chr1 95576585 95576672 -186616992 + MIR3 SINE MIR 113 208 0 769 182 8 0 chr1 95576744 95576876 -186616788 + FLAM_A SINE Alu 1 133 0 481 254 77 0 chr1 95576987 95577156 -186616508 - MIR SINE MIR 0 262 81 21 0 0 0 chr1 95577769 95577790 -186615874 + AT_rich Low_complexity Low_complexity 1 21 0 188 362 21 43 chr1 95577822 95577916 -186615748 + L2 LINE L2 3158 3249 -23 302 308 0 48 chr1 95577956 95578060 -186615604 - MIR SINE MIR -151 111 13 1690 193 17 7 chr1 95579089 95579390 -186614274 + AluJo SINE Alu 1 304 -8 1037 269 17 4 chr1 95579883 95580121 -186613543 + MIR SINE MIR 20 260 -2 2159 118 133 16 chr1 95580323 95580706 -186612958 + MSTA LTR MaLR 1 428 0 3481 98 36 38 chr1 95581272 95581800 -186611864 - MER1A DNA MER1_type 0 527 1 2304 101 3 16 chr1 95582796 95583112 -186610552 + AluSx SINE Alu 1 312 0 218 250 17 0 chr1 95583212 95583272 -186610392 + (TG)n Simple_repeat Simple_repeat 1 61 0 32 57 0 0 chr1 95583672 95583725 -186609939 + AT_rich Low_complexity Low_complexity 1 53 0 330 209 76 9 chr1 95583830 95583935 -186609729 + Charlie7 DNA MER1_type 2501 2612 0 516 279 154 0 chr1 95583950 95584151 -186609513 + MLT1K LTR MaLR 323 554 -34 832 180 0 23 chr1 95584481 95584725 -186608939 + GA-rich Low_complexity Low_complexity 1 238 0 2146 136 57 52 chr1 95585394 95586113 -186607551 + MER21A LTR ERV1 1 681 -199 2331 125 0 0 chr1 95586114 95586425 -186607239 + AluSx SINE Alu 1 311 -1 234 311 168 25 chr1 95586523 95586642 -186607022 - L2 LINE L2 -19 3253 3118 1907 149 0 40 chr1 95587213 95587535 -186606129 + AluSx SINE Alu 1 309 -3 29 0 0 0 chr1 95588170 95588199 -186605465 + AT_rich Low_complexity Low_complexity 1 29 0 432 37 0 0 chr1 95588317 95588371 -186605293 + (CA)n Simple_repeat Simple_repeat 2 55 0 1753 159 33 3 chr1 95588605 95588906 -186604758 + AluSq SINE Alu 1 310 -3 768 274 55 67 chr1 95589826 95590025 -186603639 + Charlie7 DNA MER1_type 1 201 -2411 1824 183 0 3 chr1 95590025 95590325 -186603339 + AluJo SINE Alu 6 304 -8 768 274 55 67 chr1 95590325 95590545 -186603119 + Charlie7 DNA MER1_type 201 415 -2197 19575 146 40 11 chr1 95590551 95593311 -186600353 + L1MA2 LINE L1 16 2693 -5030 2299 97 0 0 chr1 95593311 95593599 -186600065 + AluSg SINE Alu 1 288 -22 19575 146 40 11 chr1 95593599 95595570 -186598094 + L1MA2 LINE L1 2693 4604 -3119 3074 61 17 86 chr1 95595570 95596047 -186597617 - MLT2A1 LTR ERVL 0 444 1 19575 146 40 11 chr1 95596047 95598788 -186594876 + L1MA2 LINE L1 4604 7723 0 21 0 0 0 chr1 95598900 95598921 -186594743 + AT_rich Low_complexity Low_complexity 1 21 0 353 244 26 9 chr1 95598972 95599087 -186594577 + Charlie7 DNA MER1_type 586 702 -1910 33 0 0 0 chr1 95599111 95599144 -186594520 + AT_rich Low_complexity Low_complexity 1 33 0 774 143 0 8 chr1 95599144 95599263 -186594401 - FLAM_C SINE Alu -25 118 1 1720 120 0 56 chr1 95599575 95599841 -186593823 - AluSq SINE Alu -60 253 3 1780 183 10 10 chr1 95600083 95600395 -186593269 - AluJb SINE Alu 0 312 1 1012 248 128 43 chr1 95600445 95600498 -186593166 - HAL1 LINE L1 -110 2397 2350 2456 73 3 0 chr1 95600498 95600799 -186592865 - AluSg SINE Alu -8 302 1 1012 248 128 43 chr1 95600799 95601434 -186592230 - HAL1 LINE L1 -157 2350 1651 1861 138 14 7 chr1 95601539 95601828 -186591836 + AluJb SINE Alu 1 291 -21 463 293 134 29 chr1 95602017 95602427 -186591237 + L2 LINE L2 1851 2385 -929 2668 191 0 8 chr1 95602477 95603084 -186590580 + L1 LINE L1 4355 4956 -1190 2281 102 3 10 chr1 95603084 95603387 -186590277 + AluSp SINE Alu 1 301 -12 3552 87 26 0 chr1 95603387 95603998 -186589666 + L1P5 LINE L1 5162 5789 -362 297 0 0 0 chr1 95604002 95604035 -186589629 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 303 225 50 12 chr1 95604035 95604115 -186589549 + L1MC4 LINE L1 6614 6696 -1346 301 286 0 11 chr1 95604046 95604137 -186589527 - L1MC4 LINE L1 -1339 6703 6614 * 321 269 21 43 chr1 95604141 95604234 -186589430 + L1MC4 LINE L1 6614 6704 -1338 345 264 0 22 chr1 95604234 95604325 -186589339 + L1MC4 LINE L1 6615 6703 -1339 340 266 0 21 chr1 95604295 95604389 -186589275 - L1MC4 LINE L1 -1337 6705 6614 * 319 276 23 0 chr1 95604335 95604422 -186589242 + L1MC4 LINE L1 6614 6702 -1340 * 615 185 0 0 chr1 95604426 95604572 -186589092 + (TA)n Simple_repeat Simple_repeat 1 146 0 2587 91 8 0 chr1 95604575 95604937 -186588727 + L1PB1 LINE L1 5782 6146 -5 228 209 0 0 chr1 95605034 95605077 -186588587 + MER5B DNA MER1_type 7 49 -129 884 132 15 15 chr1 95605085 95605221 -186588443 - AluJo SINE Alu -176 136 1 592 227 15 23 chr1 95605221 95605353 -186588311 - MER5B DNA MER1_type -33 145 15 595 255 266 22 chr1 95605389 95606076 -186587588 + L2 LINE L2 2462 3313 0 188 143 24 0 chr1 95606138 95606180 -186587484 + (TAA)n Simple_repeat Simple_repeat 2 44 0 22 70 0 0 chr1 95606187 95606230 -186587434 + AT_rich Low_complexity Low_complexity 1 43 0 2532 73 0 10 chr1 95606884 95607197 -186586467 + AluSg SINE Alu 1 310 0 1027 40 0 0 chr1 95607197 95607322 -186586342 + L1PA3 LINE L1 6031 6155 0 1599 166 39 7 chr1 95607505 95607626 -186586038 + AluJo SINE Alu 1 117 -195 194 0 0 37 chr1 95607626 95607653 -186586011 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1599 166 39 7 chr1 95607653 95607815 -186585849 + AluJo SINE Alu 117 293 -19 16576 114 13 47 chr1 95609461 95610489 -186583175 - Tigger1 DNA MER2_type 0 2418 1357 2873 13 0 0 chr1 95610489 95610799 -186582865 - AluYb8 SINE Alu -8 310 1 16576 114 13 47 chr1 95610799 95612272 -186581392 - Tigger1 DNA MER2_type -1061 1357 1 23 68 0 0 chr1 95612641 95612685 -186580979 + AT_rich Low_complexity Low_complexity 1 44 0 356 86 0 17 chr1 95613243 95613301 -186580363 + (TA)n Simple_repeat Simple_repeat 1 57 0 207 0 0 0 chr1 95614039 95614062 -186579602 + (CCCCG)n Simple_repeat Simple_repeat 5 27 0 656 216 97 0 chr1 95614660 95614794 -186578870 - FRAM SINE Alu -19 147 1 369 154 0 15 chr1 95615667 95615732 -186577932 + FAM SINE Alu 89 152 -23 * 1508 153 105 48 chr1 95615728 95616042 -186577622 - MER1B DNA MER1_type -7 332 1 212 262 16 49 chr1 95616107 95616168 -186577496 - MER5A DNA MER1_type -76 113 55 201 39 0 0 chr1 95616172 95616198 -186577466 + (CTG)n Simple_repeat Simple_repeat 1 26 0 1770 171 13 3 chr1 95616740 95617049 -186576615 + AluJo SINE Alu 1 312 0 319 293 104 34 chr1 95617203 95617558 -186576106 - L1M4 LINE L1 -852 5294 4915 518 238 70 14 chr1 95617575 95617718 -186575946 - MER58B DNA MER1_type -3 338 188 5754 155 46 25 chr1 95617749 95618036 -186575628 - L1MC1 LINE L1 0 6333 6054 1672 187 15 91 chr1 95618036 95618431 -186575233 + MLT1A1 LTR MaLR 1 365 0 5754 155 46 25 chr1 95618431 95619168 -186574496 - L1MC1 LINE L1 -279 6054 5282 1422 160 102 36 chr1 95619168 95619443 -186574221 + AluJo SINE Alu 1 293 -19 5754 155 46 25 chr1 95619443 95619645 -186574019 - L1MC1 LINE L1 -1051 5282 5086 4361 94 58 9 chr1 95619660 95620301 -186573363 + L1PB1 LINE L1 3 674 -6189 14052 173 35 50 chr1 95620339 95623016 -186570648 + L1PB1 LINE L1 1301 4017 -2850 2255 130 0 0 chr1 95623016 95623317 -186570347 + AluSx SINE Alu 1 301 -11 14052 173 35 50 chr1 95623317 95623452 -186570212 + L1PB1 LINE L1 4017 4153 -2714 241 174 0 0 chr1 95623452 95623498 -186570166 - LTR66 LTR ERVL -171 439 394 14052 173 35 50 chr1 95623498 95623863 -186569801 + L1PB1 LINE L1 4153 4522 -2345 2219 139 51 20 chr1 95623863 95624216 -186569448 - THE1B LTR MaLR 0 364 1 12736 84 8 0 chr1 95624216 95625783 -186567881 - THE1B-int LTR MaLR 0 1580 1 2207 126 46 52 chr1 95625783 95625859 -186567805 - THE1B LTR MaLR 0 364 289 2116 118 16 26 chr1 95625859 95626165 -186567499 + AluSq SINE Alu 1 303 -10 2207 126 46 52 chr1 95626165 95626454 -186567210 - THE1B LTR MaLR -75 289 1 14052 173 35 50 chr1 95626454 95628256 -186565408 + L1PB1 LINE L1 4520 6297 -570 1784 151 43 33 chr1 95628256 95628560 -186565104 - AluSx SINE Alu -5 307 1 14052 173 35 50 chr1 95628560 95629123 -186564541 + L1PB1 LINE L1 6297 6867 0 2507 70 0 22 chr1 95629191 95629504 -186564160 + AluY SINE Alu 1 306 -5 7931 228 26 24 chr1 95629509 95629776 -186563888 - L1MC1 LINE L1 -1062 5084 4819 1829 157 3 27 chr1 95629776 95630076 -186563588 - AluJb SINE Alu -19 293 1 7931 228 26 24 chr1 95630076 95630147 -186563517 - L1MC1 LINE L1 -1327 4819 4750 2237 98 0 44 chr1 95630147 95630463 -186563201 - AluSq SINE Alu -11 302 1 7931 228 26 24 chr1 95630463 95632291 -186561373 - L1MC1 LINE L1 -1396 4750 2912 906 129 0 0 chr1 95632295 95632419 -186561245 - AluJb SINE Alu -11 301 178 234 247 67 11 chr1 95632445 95632534 -186561130 - L1M4 LINE L1 -1889 4257 4164 237 294 11 22 chr1 95632889 95632981 -186560683 + MER5A DNA MER1_type 22 112 -77 283 167 14 14 chr1 95632998 95633070 -186560594 + GA-rich Low_complexity Low_complexity 4 75 0 1950 146 0 29 chr1 95633129 95633438 -186560226 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 95634216 95634238 -186559426 + AT_rich Low_complexity Low_complexity 1 22 0 1769 148 14 11 chr1 95634501 95634785 -186558879 - AluJo SINE Alu -27 285 1 2248 129 68 0 chr1 95635117 95635443 -186558221 + MER7A DNA MER2_type 1 346 0 3447 228 143 84 chr1 95639313 95639938 -186553726 - L2 LINE L2 -4 3309 2722 1879 146 16 7 chr1 95639938 95640247 -186553417 - AluJo SINE Alu 0 312 1 3447 228 143 84 chr1 95640247 95640918 -186552746 - L2 LINE L2 -591 2722 2092 831 107 0 33 chr1 95640918 95641039 -186552625 + FRAM SINE Alu 38 154 -22 3447 228 143 84 chr1 95641039 95641598 -186552066 - L2 LINE L2 -1221 2092 1227 603 309 69 59 chr1 95641724 95642129 -186551535 + MLT1J2 LTR MaLR 2 410 -40 300 226 170 9 chr1 95642531 95642637 -186551027 - MER5A DNA MER1_type -66 123 1 2325 96 3 3 chr1 95643345 95643646 -186550018 + AluY SINE Alu 1 301 -10 1155 156 11 5 chr1 95643738 95643924 -186549740 - AluJb SINE Alu -125 187 1 570 276 75 6 chr1 95643967 95644141 -186549523 - L2 LINE L2 -15 3298 3113 958 257 30 13 chr1 95644143 95644380 -186549284 - MIR SINE MIR -1 261 21 550 147 284 0 chr1 95644396 95644512 -186549152 + MER5A DNA MER1_type 41 189 0 284 315 24 24 chr1 95644536 95644663 -186549001 - L2 LINE L2 -217 3096 2970 273 313 107 9 chr1 95645201 95645313 -186548351 + MER5A DNA MER1_type 66 188 -1 284 254 151 8 chr1 95645573 95645699 -186547965 + MIR SINE MIR 112 255 -7 306 269 166 14 chr1 95646165 95646310 -186547354 + MIR3 SINE MIR 36 202 -6 184 216 0 0 chr1 95647119 95647156 -186546508 + L2 LINE L2 3272 3308 -5 955 278 66 29 chr1 95647203 95647765 -186545899 + L1MEc LINE L1 1056 1638 -4758 1494 176 9 50 chr1 95647768 95647861 -186545803 + L1MA4 LINE L1 5962 6057 -243 2460 78 0 0 chr1 95647861 95648157 -186545507 + AluSc SINE Alu 1 296 -13 1494 176 9 50 chr1 95648157 95648386 -186545278 + L1MA4 LINE L1 6057 6271 -29 1927 176 67 21 chr1 95648423 95648661 -186545003 + L1MEc LINE L1 1624 1850 -4546 2405 58 0 14 chr1 95648661 95648953 -186544711 + AluY SINE Alu 1 288 -23 189 0 0 0 chr1 95648955 95648976 -186544688 + (GA)n Simple_repeat Simple_repeat 2 22 0 1927 176 67 21 chr1 95648976 95649155 -186544509 + L1MEc LINE L1 1850 2063 -4333 373 267 76 0 chr1 95649291 95649396 -186544268 - L2 LINE L2 -38 3275 3163 638 249 65 0 chr1 95650655 95650840 -186542824 + MIR SINE MIR 40 236 -26 1581 268 123 49 chr1 95651920 95652700 -186540964 + L2 LINE L2 1884 2721 -593 323 203 0 0 chr1 95652664 95652723 -186540941 + MIR SINE MIR 163 221 -41 * 693 308 145 17 chr1 95652737 95653059 -186540605 + L2 LINE L2 2922 3292 -21 2131 110 13 10 chr1 95653059 95653359 -186540305 - AluSg SINE Alu -9 301 1 693 308 145 17 chr1 95653359 95653380 -186540284 + L2 LINE L2 3292 3309 -4 716 250 252 24 chr1 95653419 95653888 -186539776 + L2 LINE L2 2716 3310 -3 2130 139 0 13 chr1 95655579 95655895 -186537769 + AluSx SINE Alu 1 312 0 967 231 143 40 chr1 95656105 95656426 -186537238 + MLT1A1 LTR MaLR 12 365 0 1579 143 23 34 chr1 95656569 95656834 -186536830 + AluJo SINE Alu 34 295 -17 29 0 0 0 chr1 95657723 95657752 -186535912 + AT_rich Low_complexity Low_complexity 1 29 0 2416 95 0 0 chr1 95658458 95658762 -186534902 + AluSp SINE Alu 1 304 -9 290 96 0 19 chr1 95658829 95658881 -186534783 + (CA)n Simple_repeat Simple_repeat 1 51 0 311 306 204 19 chr1 95658973 95659179 -186534485 - MIR SINE MIR -16 246 3 286 214 146 0 chr1 95659419 95659508 -186534156 - L2 LINE L2 -3 3269 3168 371 335 57 37 chr1 95659943 95660118 -186533546 + MIR SINE MIR 13 196 -66 2360 94 0 0 chr1 95660118 95660416 -186533248 + AluSx SINE Alu 1 298 -14 371 335 57 37 chr1 95660416 95660485 -186533179 + MIR SINE MIR 196 262 0 211 254 36 18 chr1 95660657 95660712 -186532952 + MIR SINE MIR 34 89 -173 494 79 0 0 chr1 95660712 95660775 -186532889 - AluJb SINE Alu -15 297 235 972 161 0 0 chr1 95660775 95660924 -186532740 - AluJb SINE Alu -163 149 1 208 232 161 0 chr1 95660926 95660982 -186532682 + MIR SINE MIR 81 145 -63 501 302 28 22 chr1 95662716 95662913 -186530751 + MIR SINE MIR 16 215 -47 364 289 98 98 chr1 95664750 95665313 -186528351 + L1M2 LINE L1 777 1339 -5510 23 33 0 0 chr1 95666081 95666111 -186527553 + AT_rich Low_complexity Low_complexity 1 30 0 235 299 103 19 chr1 95666552 95666659 -186527005 + MIR SINE MIR 21 136 -126 2516 113 96 32 chr1 95666693 95667161 -186526503 - LTR21A LTR ERV1 -7 498 1 1607 208 39 36 chr1 95667285 95667674 -186525990 + L1M4 LINE L1 4502 4891 -1255 1127 225 86 0 chr1 95667675 95667942 -186525722 - MER99 DNA DNA -131 697 408 2213 122 0 0 chr1 95667943 95668247 -186525417 - AluSx SINE Alu -8 304 1 6707 126 41 65 chr1 95668311 95668966 -186524698 + Tigger3b DNA MER2_type 15 684 -2344 2325 101 7 0 chr1 95668966 95669273 -186524391 + AluSg SINE Alu 1 309 -1 6707 126 41 65 chr1 95669273 95669340 -186524324 + Tigger3b DNA MER2_type 684 751 -2277 1740 161 7 3 chr1 95669340 95669632 -186524032 + AluJo SINE Alu 1 293 -19 6707 126 41 65 chr1 95669632 95669862 -186523802 + Tigger3b DNA MER2_type 751 985 -2043 2510 59 7 7 chr1 95669862 95670167 -186523497 - AluY SINE Alu -6 305 1 6707 126 41 65 chr1 95670167 95670459 -186523205 + Tigger3b DNA MER2_type 985 1231 0 331 191 124 19 chr1 95670459 95670564 -186523100 - MER99 DNA DNA -554 274 159 34 42 0 0 chr1 95670755 95670803 -186522861 + AT_rich Low_complexity Low_complexity 1 48 0 209 359 43 0 chr1 95671370 95671487 -186522177 - L2 LINE L2 -8 3305 3184 2305 143 27 16 chr1 95671650 95672021 -186521643 + THE1C LTR MaLR 1 375 0 686 235 49 49 chr1 95672224 95672488 -186521176 - L1MC/D LINE L1 -1993 5815 5552 1344 236 95 10 chr1 95672490 95673101 -186520563 - L2 LINE L2 -6 3307 2639 468 293 43 0 chr1 95673103 95673243 -186520421 - L2 LINE L2 -846 2468 2323 710 215 169 23 chr1 95673245 95673506 -186520158 - MER5C DNA MER1_type -1 323 25 306 231 0 51 chr1 95673535 95673613 -186520051 - L2 LINE L2 -966 2348 2275 2073 131 0 7 chr1 95673994 95674285 -186519379 + AluSx SINE Alu 1 289 -23 242 275 110 11 chr1 95674629 95674720 -186518944 - MIR SINE MIR -109 153 54 687 165 91 0 chr1 95676132 95676253 -186517411 + FLAM_C SINE Alu 2 133 0 357 380 76 22 chr1 95676320 95676544 -186517120 - L2 LINE L2 -86 3186 2951 300 301 88 114 chr1 95676979 95677771 -186515893 - L2 LINE L2 -416 2898 2127 1953 76 64 8 chr1 95678130 95678394 -186515270 - AluY SINE Alu -24 287 9 315 292 85 39 chr1 95679403 95679533 -186514131 - L2 LINE L2 0 3272 3137 324 210 25 49 chr1 95679575 95679656 -186514008 + L2 LINE L2 3174 3252 -20 351 78 0 0 chr1 95679658 95679709 -186513955 + (TGAA)n Simple_repeat Simple_repeat 4 54 0 232 333 96 22 chr1 95680372 95680507 -186513157 + MER5A DNA MER1_type 4 148 -41 1185 181 172 0 chr1 95680722 95681081 -186512583 + Charlie4a DNA MER1_type 67 506 -2 261 0 0 0 chr1 95681449 95681478 -186512186 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 832 168 0 0 chr1 95681488 95681619 -186512045 + AluJo/FLAM SINE Alu 3 133 -169 2236 92 3 3 chr1 95681619 95681903 -186511761 + AluSx SINE Alu 1 284 -28 2686 140 20 29 chr1 95682167 95682616 -186511048 - MER65A LTR ERV1 0 445 1 2419 77 0 19 chr1 95683183 95683496 -186510168 - AluY SINE Alu -4 307 1 2001 203 50 26 chr1 95684423 95684882 -186508782 + MLT1D LTR MaLR 36 505 0 257 355 13 0 chr1 95685018 95685094 -186508570 - L2 LINE L2 -47 3225 3149 * 1513 248 58 24 chr1 95685087 95685551 -186508113 + L2 LINE L2 2318 2797 -517 806 278 50 30 chr1 95685664 95685979 -186507685 + MLT1I LTR MaLR 108 398 -11 1056 236 207 31 chr1 95685979 95686395 -186507269 + L2 LINE L2 2821 3309 -4 742 88 0 0 chr1 95686449 95686540 -186507124 - AluSg SINE Alu -205 105 15 336 186 17 0 chr1 95686540 95686599 -186507065 + Alu SINE Alu 237 296 -5 2483 76 0 0 chr1 95686849 95687153 -186506511 + AluSg SINE Alu 1 304 -6 801 261 7 66 chr1 95687242 95687416 -186506248 + MIR SINE MIR 7 161 -101 1377 111 55 5 chr1 95687416 95687633 -186506031 + L1MA4 LINE L1 6067 6294 -6 801 261 7 66 chr1 95687633 95687730 -186505934 + MIR SINE MIR 161 262 0 723 268 11 6 chr1 95687955 95688138 -186505526 - MIR SINE MIR -66 196 13 2550 62 3 0 chr1 95689230 95689537 -186504127 + AluSg SINE Alu 1 308 -2 2426 72 7 0 chr1 95689541 95689848 -186503816 + AluY SINE Alu 1 309 -2 288 241 13 25 chr1 95690314 95690393 -186503271 + MARNA DNA Mariner 15 92 -494 913 263 60 18 chr1 95690502 95690787 -186502877 - L2 LINE L2 -467 2847 2551 295 270 0 14 chr1 95690830 95690904 -186502760 + L2 LINE L2 3240 3312 -1 * 583 312 129 32 chr1 95690902 95691459 -186502205 + L2 LINE L2 2447 3056 -257 1389 148 12 45 chr1 95691539 95691782 -186501882 + MER82 DNA MER2_type 28 262 -391 945 129 8 0 chr1 95691927 95692059 -186501605 - FLAM_C SINE Alu 0 133 1 314 247 21 43 chr1 95692093 95692186 -186501478 + L2 LINE L2 3182 3272 0 214 287 229 25 chr1 95692600 95692757 -186500907 - MIR SINE MIR -4 258 70 2028 181 17 38 chr1 95692757 95693178 -186500486 - MLT1D LTR MaLR 0 505 94 231 211 0 0 chr1 95693191 95693248 -186500416 + A-rich Low_complexity Low_complexity 1 57 0 505 195 25 51 chr1 95693252 95693313 -186500351 - MLT1D LTR MaLR -388 117 59 2495 94 83 9 chr1 95693313 95693652 -186500012 - THE1B LTR MaLR 0 364 1 505 195 25 51 chr1 95693652 95693708 -186499956 - MLT1D LTR MaLR -446 59 3 561 295 49 45 chr1 95693710 95693934 -186499730 + MIR SINE MIR 13 237 -25 1688 193 18 0 chr1 95693967 95694293 -186499371 + L1ME1 LINE L1 4780 5111 -1035 880 210 134 52 chr1 95694363 95694706 -186498958 + L1ME1 LINE L1 5791 6161 -5 738 216 27 51 chr1 95695031 95695261 -186498403 + MIR SINE MIR 19 240 -22 184 316 0 40 chr1 95696071 95696147 -186497517 - L2 LINE L2 -10 3303 3231 2122 86 69 0 chr1 95696906 95697196 -186496468 - AluY SINE Alu -1 310 1 222 235 107 86 chr1 95697319 95697506 -186496158 - L2 LINE L2 -1791 1523 1333 534 267 76 33 chr1 95697518 95697964 -186495700 + L1ME4a LINE L1 5593 6104 -17 1576 166 53 4 chr1 95698511 95698800 -186494864 - AluJb SINE Alu 0 308 7 1296 153 10 5 chr1 95699324 95699526 -186494138 - AluJb SINE Alu -25 287 85 184 319 278 0 chr1 95699739 95699883 -186493781 + MIR SINE MIR 29 212 -50 1930 158 10 0 chr1 95700073 95700377 -186493287 + AluJb SINE Alu 1 307 -5 21 57 0 0 chr1 95700454 95700489 -186493175 + AT_rich Low_complexity Low_complexity 1 35 0 38 61 0 0 chr1 95700542 95700608 -186493056 + AT_rich Low_complexity Low_complexity 1 66 0 315 248 43 79 chr1 95700811 95701068 -186492596 - L1MC4a LINE L1 -329 5841 5657 212 184 0 0 chr1 95701068 95701106 -186492558 + (TA)n Simple_repeat Simple_repeat 2 39 0 232 139 0 0 chr1 95701110 95701153 -186492511 + LTR66 LTR ERVL 397 439 -171 218 267 0 47 chr1 95701170 95701256 -186492408 + T-rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr1 95701332 95701354 -186492310 + AT_rich Low_complexity Low_complexity 1 22 0 332 282 69 84 chr1 95701706 95701719 -186491945 - LTR16A1 LTR ERVL 0 457 445 2503 190 17 9 chr1 95701719 95702182 -186491482 + MLT1C LTR MaLR 1 467 0 332 282 69 84 chr1 95702182 95702430 -186491234 - LTR16A1 LTR ERVL -12 445 200 254 342 66 40 chr1 95703183 95703335 -186490329 + L2 LINE L2 2651 2806 -508 1162 264 204 24 chr1 95703438 95704017 -186489647 + L2 LINE L2 2355 3111 -202 2414 97 0 0 chr1 95704017 95704325 -186489339 + AluSc SINE Alu 1 308 -1 1162 264 204 24 chr1 95704325 95704529 -186489135 + L2 LINE L2 3111 3277 -36 204 283 0 17 chr1 95704539 95704599 -186489065 + GA-rich Low_complexity Low_complexity 1 59 0 603 201 75 4 chr1 95705424 95705562 -186488102 - MIR SINE MIR -28 234 89 218 268 28 42 chr1 95705741 95705812 -186487852 - MIR3 SINE MIR -136 72 3 966 263 20 8 chr1 95705959 95706210 -186487454 - MIR SINE MIR 0 262 9 1049 163 43 5 chr1 95706408 95706592 -186487072 - MER20 DNA MER1_type 0 219 29 635 202 40 0 chr1 95706625 95706749 -186486915 + L1MC4 LINE L1 7914 8042 0 26 0 0 0 chr1 95706849 95706875 -186486789 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr1 95707106 95707136 -186486528 + AT_rich Low_complexity Low_complexity 1 30 0 467 188 235 20 chr1 95708918 95709067 -186484597 - MER5A DNA MER1_type 0 189 9 370 218 159 4 chr1 95709535 95709654 -186484010 - MER20B DNA MER1_type -18 201 64 357 24 0 0 chr1 95709656 95709698 -186483966 + (CA)n Simple_repeat Simple_repeat 2 43 0 322 316 41 51 chr1 95710613 95710809 -186482855 - MIR SINE MIR -23 239 46 500 228 24 8 chr1 95711029 95711156 -186482508 - MER33 DNA MER1_type -191 133 5 242 256 30 45 chr1 95711860 95711993 -186481671 - Charlie8 DNA MER1_type -2252 165 35 21 0 0 0 chr1 95712121 95712142 -186481522 + AT_rich Low_complexity Low_complexity 1 21 0 243 246 15 0 chr1 95712395 95712460 -186481204 - L2 LINE L2 -60 3253 3188 294 136 37 0 chr1 95713308 95713389 -186480275 + (TA)n Simple_repeat Simple_repeat 2 85 0 231 276 164 26 chr1 95714797 95714913 -186478751 + MIR SINE MIR 20 151 -57 8852 26 1 0 chr1 95716149 95717974 -186475690 + L1PA4 LINE L1 4317 6152 -3 2527 45 0 19 chr1 95718283 95718597 -186475067 + AluY SINE Alu 1 308 -3 630 152 80 32 chr1 95718762 95718887 -186474777 + AluJb SINE Alu 1 131 -181 1437 167 7 20 chr1 95718907 95719207 -186474457 + L1MA4 LINE L1 6005 6300 0 238 283 113 30 chr1 95719313 95719578 -186474086 + L1ME LINE L1 5378 5664 -457 1964 138 3 0 chr1 95720450 95720778 -186472886 + AluSx SINE Alu 1 329 0 2183 93 0 3 chr1 95720965 95721265 -186472399 - AluY SINE Alu -12 299 1 197 280 93 0 chr1 95722210 95722285 -186471379 - MIR SINE MIR -13 249 168 599 80 34 0 chr1 95722310 95722398 -186471266 + AluSp/q SINE Alu 221 311 -2 1242 78 0 7 chr1 95722804 95722957 -186470707 + AluSc SINE Alu 106 257 -52 1492 159 2 6 chr1 95723054 95723391 -186470273 + L1M4 LINE L1 5091 5426 -743 2014 198 11 13 chr1 95723396 95723851 -186469813 + L1MB8 LINE L1 4667 5120 -1026 * 2782 164 52 79 chr1 95723842 95724616 -186469048 + L1MB8 LINE L1 5417 6169 -9 24 32 0 0 chr1 95724842 95724873 -186468791 + AT_rich Low_complexity Low_complexity 1 31 0 948 167 0 6 chr1 95725457 95725625 -186468039 - L1PA16 LINE L1 -7 6159 5993 2312 60 0 0 chr1 95727011 95727344 -186466320 + AluY SINE Alu 1 333 0 28 0 0 0 chr1 95727705 95727733 -186465931 + AT_rich Low_complexity Low_complexity 1 28 0 191 146 24 0 chr1 95728204 95728245 -186465419 + CT-rich Low_complexity Low_complexity 2 43 0 265 260 156 13 chr1 95728321 95728398 -186465266 - L2 LINE L2 -1 3312 3225 287 261 45 11 chr1 95728401 95728489 -186465175 - MIR SINE MIR -76 186 96 662 221 0 0 chr1 95728629 95728778 -186464886 - L1MA10 LINE L1 -3 6331 6183 315 190 58 58 chr1 95728793 95728914 -186464750 - L1ME1 LINE L1 -151 6015 5895 975 151 0 13 chr1 95728914 95729066 -186464598 - FRAM SINE Alu -19 157 8 4332 207 60 21 chr1 95729075 95729625 -186464039 - L1ME1 LINE L1 -279 5887 5360 1914 166 3 0 chr1 95729625 95729926 -186463738 - AluSx SINE Alu -10 302 1 4332 207 60 21 chr1 95729926 95730872 -186462792 - L1ME1 LINE L1 -806 5360 4304 2354 109 3 0 chr1 95730872 95731176 -186462488 - AluSx SINE Alu -7 305 1 4332 207 60 21 chr1 95731176 95731431 -186462233 - L1ME1 LINE L1 -1862 4304 4060 362 322 0 8 chr1 95731777 95731898 -186461766 - MARNA DNA Mariner -89 497 378 623 230 61 126 chr1 95731899 95732177 -186461487 + MIR SINE MIR 2 261 -1 621 269 25 35 chr1 95732164 95732361 -186461303 + MIR SINE MIR 68 262 0 * 1375 175 94 16 chr1 95732502 95732811 -186460853 - MER1B DNA MER1_type -6 333 1 1191 233 40 29 chr1 95733291 95733810 -186459854 - Charlie7 DNA MER1_type 0 2612 2088 341 268 59 26 chr1 95734110 95734263 -186459401 + L1ME4a LINE L1 5963 6120 -1 199 361 107 33 chr1 95734965 95735087 -186458577 - L2 LINE L2 -5 3267 3137 473 243 181 41 chr1 95735167 95735383 -186458281 - MIR SINE MIR 0 262 27 238 237 53 79 chr1 95735516 95735630 -186458034 - L2 LINE L2 -34 3279 3169 501 110 0 0 chr1 95735982 95736064 -186457600 - L1MB3 LINE L1 0 6183 6102 1097 158 24 0 chr1 95736102 95736311 -186457353 - L1MB3 LINE L1 -79 6104 5891 384 275 176 29 chr1 95736379 95736549 -186457115 + L2 LINE L2 2698 2916 -398 2415 105 0 6 chr1 95736549 95736863 -186456801 - AluSx SINE Alu 0 312 1 384 275 176 29 chr1 95736863 95736936 -186456728 + L2 LINE L2 2916 2977 -337 * 528 244 8 30 chr1 95736929 95737060 -186456604 - L2 LINE L2 -1 3312 3185 185 280 110 20 chr1 95737446 95737546 -186456118 + MIR SINE MIR 142 250 -12 194 315 79 34 chr1 95737600 95737689 -186455975 + L2 LINE L2 3137 3229 -43 305 306 54 9 chr1 95737904 95738015 -186455649 + MIR3 SINE MIR 86 201 -7 463 273 143 37 chr1 95738809 95738970 -186454694 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr1 95739007 95739028 -186454636 + AT_rich Low_complexity Low_complexity 1 21 0 697 327 126 29 chr1 95739849 95740722 -186452942 + L2 LINE L2 2350 3313 0 1737 138 14 18 chr1 95741416 95741692 -186451972 - AluJb SINE Alu -34 278 4 334 263 12 0 chr1 95742083 95742254 -186451410 + (TA)n Simple_repeat Simple_repeat 2 174 0 333 233 0 0 chr1 95743696 95743786 -186449878 + CT-rich Low_complexity Low_complexity 5 94 0 202 348 22 0 chr1 95743955 95744047 -186449617 - L3b LINE CR1 -359 1224 1131 459 205 74 8 chr1 95744269 95744391 -186449273 - FLAM_C SINE Alu -4 139 10 2018 139 0 34 chr1 95744696 95745019 -186448645 + AluJb SINE Alu 1 312 0 512 282 26 32 chr1 95747294 95747450 -186446214 + MIR3 SINE MIR 17 171 -37 597 12 24 12 chr1 95747510 95747593 -186446071 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 2362 86 10 0 chr1 95748032 95748333 -186445331 + AluSp SINE Alu 3 306 -7 21 57 0 0 chr1 95748739 95748774 -186444890 + AT_rich Low_complexity Low_complexity 1 35 0 366 234 19 28 chr1 95749007 95749114 -186444550 + MIR SINE MIR 138 243 -19 204 150 25 0 chr1 95749555 95749595 -186444069 + (CCTG)n Simple_repeat Simple_repeat 3 43 0 586 238 90 27 chr1 95750335 95750634 -186443030 + L1M4 LINE L1 3768 4085 -2061 286 346 74 6 chr1 95751087 95751249 -186442415 + MIR SINE MIR 63 235 -27 2051 268 92 29 chr1 95751261 95752046 -186441618 + L2 LINE L2 2119 2952 -362 1018 186 0 0 chr1 95752104 95752265 -186441399 - FRAM SINE Alu -16 160 1 190 139 56 0 chr1 95752265 95752301 -186441363 - L2 LINE L2 -9 3304 3267 * 316 245 186 0 chr1 95752298 95752400 -186441264 - L2 LINE L2 -233 3080 2960 184 271 68 0 chr1 95752576 95752635 -186441029 + MIR SINE MIR 190 252 -10 2254 123 3 0 chr1 95752754 95753063 -186440601 - AluSx SINE Alu 0 312 3 402 278 249 34 chr1 95753893 95754098 -186439566 + MIR SINE MIR 5 253 -9 228 35 0 0 chr1 95754131 95754160 -186439504 + (CA)n Simple_repeat Simple_repeat 1 29 0 2319 118 0 3 chr1 95755308 95755621 -186438043 + AluSq SINE Alu 1 312 -1 1355 163 9 9 chr1 95755770 95755997 -186437667 + AluSg/x SINE Alu 80 306 -6 372 248 108 8 chr1 95756219 95756348 -186437316 + MIR SINE MIR 79 220 -42 31 26 0 0 chr1 95756356 95756394 -186437270 + AT_rich Low_complexity Low_complexity 1 38 0 907 132 0 0 chr1 95756522 95756651 -186437013 + AluSq/x SINE Alu 1 129 -184 405 208 14 90 chr1 95757218 95757362 -186436302 + MLT1J2 LTR MaLR 67 199 -251 257 229 33 25 chr1 95757414 95757510 -186436154 + MLT1I LTR MaLR 316 401 -8 393 332 91 15 chr1 95757786 95758060 -186435604 + L2 LINE L2 2670 2964 -350 5214 160 37 1 chr1 95758183 95759329 -186434335 + L1MA4 LINE L1 5113 6294 -6 1583 236 119 49 chr1 95759521 95759998 -186433666 + MLT1G1 LTR MaLR 1 443 -152 234 0 0 0 chr1 95759998 95760024 -186433640 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1963 89 0 86 chr1 95760032 95760335 -186433329 - AluSx SINE Alu -35 277 1 1583 236 119 49 chr1 95760335 95760402 -186433262 + MLT1G1 LTR MaLR 449 593 -2 381 311 0 0 chr1 95760405 95760508 -186433156 + MIR SINE MIR 159 261 -1 869 217 26 49 chr1 95760527 95760753 -186432911 - MLT1D LTR MaLR -272 233 13 1505 206 146 30 chr1 95761278 95761709 -186431955 - MLT1D LTR MaLR -24 481 1 242 186 0 71 chr1 95761935 95762005 -186431659 + A-rich Low_complexity Low_complexity 4 68 0 244 284 142 11 chr1 95762333 95762509 -186431155 + L1MC4a LINE L1 5730 5928 -1880 230 331 69 15 chr1 95762486 95762616 -186431048 + HAL1b LINE L1 1129 1265 -83 * 6625 63 23 5 chr1 95762989 95763874 -186429790 - L1PA7 LINE L1 0 6154 5254 2253 228 79 23 chr1 95763888 95764913 -186428751 - L1ME LINE L1 -438 5728 4640 180 0 0 0 chr1 95765592 95765612 -186428052 + (T)n Simple_repeat Simple_repeat 1 20 0 1794 169 60 58 chr1 95766641 95767072 -186426592 - MSTB1 LTR MaLR 0 432 1 280 170 0 0 chr1 95767207 95767254 -186426410 - MER113 DNA MER1_type? -334 187 141 1670 118 13 0 chr1 95767403 95767632 -186426032 + AluSx SINE Alu 63 294 -18 320 268 43 24 chr1 95768049 95768213 -186425451 + L1MC4 LINE L1 7864 8030 -12 373 221 134 31 chr1 95769474 95769601 -186424063 - L2 LINE L2 0 3313 3174 201 74 0 0 chr1 95769601 95769628 -186424036 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 401 273 175 21 chr1 95769865 95770059 -186423605 - L2 LINE L2 -252 3061 2838 186 279 306 16 chr1 95770109 95770292 -186423372 - L2 LINE L2 -649 2665 2430 401 205 162 8 chr1 95770677 95770794 -186422870 - L1ME3 LINE L1 -10 6152 6018 22 35 0 0 chr1 95771052 95771081 -186422583 + AT_rich Low_complexity Low_complexity 1 29 0 1552 90 0 0 chr1 95771210 95771411 -186422253 - AluY SINE Alu -6 305 105 1958 76 23 105 chr1 95771454 95771796 -186421868 + AluYb8 SINE Alu 2 315 -3 480 225 278 0 chr1 95771973 95772146 -186421518 + L2 LINE L2 2393 2613 -701 626 274 35 30 chr1 95772146 95772376 -186421288 + HAL1 LINE L1 1511 1741 -766 387 141 0 0 chr1 95772383 95772447 -186421217 + (A)n Simple_repeat Simple_repeat 1 64 0 718 140 7 77 chr1 95772731 95772874 -186420790 + FLAM_C SINE Alu 1 133 0 916 126 0 15 chr1 95773639 95773774 -186419890 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr1 95774243 95774269 -186419395 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr1 95774425 95774470 -186419194 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr1 95775254 95775280 -186418384 + AT_rich Low_complexity Low_complexity 1 26 0 2279 94 3 0 chr1 95775470 95775769 -186417895 + AluSx SINE Alu 1 300 -12 2219 127 7 0 chr1 95778804 95779111 -186414553 + AluSx SINE Alu 1 309 -3 2007 100 0 4 chr1 95780467 95780736 -186412928 - AluSg SINE Alu -14 296 29 306 0 0 0 chr1 95780804 95780838 -186412826 + (TA)n Simple_repeat Simple_repeat 1 34 0 478 313 100 21 chr1 95780842 95781082 -186412582 - MIR SINE MIR 0 262 4 206 348 84 28 chr1 95781261 95781439 -186412225 - L2 LINE L2 -799 2515 2328 510 303 72 19 chr1 95781452 95781660 -186412004 - MIR SINE MIR -6 256 38 21 36 0 0 chr1 95782115 95782143 -186411521 + AT_rich Low_complexity Low_complexity 1 28 0 1884 146 10 0 chr1 95782309 95782597 -186411067 + AluSx SINE Alu 1 291 -21 215 170 0 21 chr1 95782929 95782976 -186410688 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1221 148 4 86 chr1 95783222 95783415 -186410249 - AluJb SINE Alu -6 306 135 1990 126 14 3 chr1 95783415 95783709 -186409955 + AluSx SINE Alu 1 297 -15 1221 148 4 86 chr1 95783709 95783758 -186409906 - AluJb SINE Alu -177 135 84 243 416 29 10 chr1 95783805 95784014 -186409650 - L2 LINE L2 -1379 1935 1723 2035 136 0 16 chr1 95784285 95784601 -186409063 + AluJb SINE Alu 1 311 -1 315 195 23 94 chr1 95784601 95784729 -186408935 + L1ME4a LINE L1 5568 5686 -435 1207 136 37 5 chr1 95784829 95785020 -186408644 - AluJb SINE Alu -29 283 87 192 356 41 34 chr1 95785042 95785188 -186408476 + MIR SINE MIR 15 161 -101 2108 124 0 7 chr1 95785190 95785488 -186408176 + AluSx SINE Alu 2 297 -15 369 220 114 15 chr1 95786006 95786138 -186407526 + L1ME4a LINE L1 5966 6110 -11 1296 199 98 7 chr1 95787471 95787748 -186405916 - AluJo SINE Alu -10 302 1 1032 175 44 0 chr1 95787848 95788031 -186405633 + MER46A DNA MER2_type 4 194 -42 1060 254 46 13 chr1 95788031 95788338 -186405326 - L1MC4a LINE L1 -1901 5907 5591 488 322 87 60 chr1 95788338 95788819 -186404845 - L2 LINE L2 -832 2482 1989 244 275 108 33 chr1 95788888 95789008 -186404656 + MER5B DNA MER1_type 1 129 -49 1043 334 70 35 chr1 95789108 95789853 -186403811 - L2 LINE L2 -1406 1908 1138 2015 248 47 6 chr1 95789857 95790389 -186403275 + L1MEc LINE L1 42 595 -5801 1866 138 71 78 chr1 95790391 95790853 -186402811 + MLT1C LTR MaLR 9 467 0 1783 224 102 24 chr1 95790860 95791477 -186402187 + L1MEc LINE L1 590 1254 -5142 642 211 34 84 chr1 95791514 95791812 -186401852 + L1MEc LINE L1 2553 2835 -3380 1830 131 59 3 chr1 95792573 95792863 -186400801 + AluSx SINE Alu 1 306 -6 22 70 0 0 chr1 95793422 95793465 -186400199 + AT_rich Low_complexity Low_complexity 1 43 0 571 246 58 24 chr1 95794051 95794258 -186399406 + L1MC5 LINE L1 7712 7925 -36 287 344 160 20 chr1 95794693 95795143 -186398521 + L2 LINE L2 2261 2773 -541 307 302 95 16 chr1 95795966 95796092 -186397572 + MIR SINE MIR 13 148 -114 22 0 0 0 chr1 95796222 95796244 -186397420 + AT_rich Low_complexity Low_complexity 1 22 0 2237 91 10 10 chr1 95797764 95798060 -186395604 + AluSg SINE Alu 1 296 -14 2216 117 3 0 chr1 95798495 95798794 -186394870 - AluSx SINE Alu -12 300 1 440 282 0 30 chr1 95798794 95798916 -186394748 - MIR3 SINE MIR -57 151 32 22 56 0 0 chr1 95798968 95799004 -186394660 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr1 95800739 95800766 -186392898 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 95801465 95801494 -186392170 + AT_rich Low_complexity Low_complexity 1 29 0 329 206 63 0 chr1 95801529 95801592 -186392072 + L2 LINE L2 3247 3313 0 351 318 95 19 chr1 95801739 95801950 -186391714 + L1ME4a LINE L1 5718 5944 -177 1313 140 77 73 chr1 95801954 95802240 -186391424 + AluJb SINE Alu 11 297 -15 236 165 21 41 chr1 95802519 95802616 -186391048 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 8454 21 9 0 chr1 95802751 95803755 -186389909 - L1PA3 LINE L1 -1596 4550 3538 7518 27 6 0 chr1 95803755 95805366 -186388298 + L1PA3 LINE L1 4535 6152 -3 972 285 161 20 chr1 95805847 95806251 -186387413 - LTR16C LTR ERVL -30 461 1 276 190 0 0 chr1 95806423 95806481 -186387183 - MER116 DNA Mariner -22 58 1 180 0 0 0 chr1 95806755 95806775 -186386889 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 1908 167 3 0 chr1 95806898 95807197 -186386467 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr1 95808169 95808192 -186385472 + AT_rich Low_complexity Low_complexity 1 23 0 190 360 80 0 chr1 95808747 95808822 -186384842 - L2 LINE L2 -41 3231 3151 2378 87 0 0 chr1 95808822 95809121 -186384543 + AluSg SINE Alu 1 299 -11 1359 158 0 10 chr1 95809555 95809764 -186383900 + AluJo SINE Alu 85 291 -21 24 0 0 0 chr1 95809819 95809843 -186383821 + AT_rich Low_complexity Low_complexity 1 24 0 296 289 255 7 chr1 95810020 95810169 -186383495 - MIR SINE MIR -70 192 7 299 345 46 0 chr1 95810344 95810431 -186383233 - MIR SINE MIR -147 115 25 1682 172 3 24 chr1 95810975 95811272 -186382392 - AluJb SINE Alu -21 291 1 28 48 0 0 chr1 95811387 95811429 -186382235 + AT_rich Low_complexity Low_complexity 1 42 0 225 91 61 0 chr1 95811739 95811772 -186381892 - Alu SINE Alu -177 125 91 * 291 147 78 10 chr1 95811770 95811872 -186381792 + (TA)n Simple_repeat Simple_repeat 1 109 0 2499 54 0 0 chr1 95812224 95812518 -186381146 + AluY SINE Alu 1 294 -17 393 210 150 8 chr1 95813203 95813370 -186380294 - MIR SINE MIR -30 232 4 321 206 366 8 chr1 95813621 95813752 -186379912 + MER5A DNA MER1_type 12 189 0 2441 50 0 0 chr1 95814990 95815298 -186378366 - AluY SINE Alu 0 308 1 233 233 50 17 chr1 95815554 95815614 -186378050 + MIR SINE MIR 75 136 -126 232 242 0 0 chr1 95818513 95818579 -186375085 + (TCG)n Simple_repeat Simple_repeat 1 66 0 32 43 0 0 chr1 95819136 95819182 -186374482 + GC_rich Low_complexity Low_complexity 1 46 0 297 231 39 87 chr1 95820070 95820174 -186373490 + L2 LINE L2 3215 3313 0 1539 189 0 75 chr1 95820421 95820754 -186372910 + AluJb SINE Alu 1 308 -4 187 365 25 95 chr1 95820754 95821028 -186372636 + L2 LINE L2 3014 3268 -4 240 109 0 65 chr1 95821798 95821844 -186371820 + L1ME3A LINE L1 6128 6170 0 1817 166 7 0 chr1 95822636 95822920 -186370744 + AluSx SINE Alu 1 286 -26 2405 74 13 16 chr1 95822930 95823242 -186370422 + AluY SINE Alu 1 311 0 1008 212 82 39 chr1 95823826 95824613 -186369051 + L1MC5 LINE L1 7030 7913 -48 1190 257 171 32 chr1 95824843 95825411 -186368253 + L2 LINE L2 438 1084 -2230 862 133 31 0 chr1 95825426 95825554 -186368110 - FLAM_C SINE Alu -11 132 1 820 274 168 32 chr1 95825556 95826282 -186367382 + L2 LINE L2 1075 3189 -124 1468 174 92 49 chr1 95826468 95826501 -186367163 + L1MB7 LINE L1 5843 5873 -311 1722 160 56 3 chr1 95826501 95826789 -186366875 + AluJb SINE Alu 1 303 -9 1468 174 92 49 chr1 95826789 95827083 -186366581 + L1MB7 LINE L1 5873 6184 0 1491 155 0 8 chr1 95827104 95827343 -186366321 - AluSg/x SINE Alu -2 310 74 1288 224 48 24 chr1 95827535 95827870 -186365794 + MER2 DNA MER2_type 2 344 0 2461 49 0 3 chr1 95828441 95828745 -186364919 + AluY SINE Alu 1 303 -8 2126 88 47 0 chr1 95828903 95829200 -186364464 - AluY SINE Alu 0 311 1 1776 107 4 8 chr1 95829338 95829580 -186364084 + AluSg/x SINE Alu 65 305 -7 1630 133 47 36 chr1 95830065 95830344 -186363320 + AluJo SINE Alu 3 284 -28 2546 49 13 0 chr1 95830505 95830812 -186362852 - AluY SINE Alu 0 311 1 246 186 71 43 chr1 95830992 95831062 -186362602 - Charlie8 DNA MER1_type 0 2417 2346 301 342 37 47 chr1 95832572 95832762 -186360902 + L1MDa LINE L1 117 304 -6236 530 242 0 128 chr1 95833299 95833518 -186360146 + L1MDa LINE L1 909 1099 -5444 821 181 0 0 chr1 95833523 95833650 -186360014 + FLAM_C SINE Alu 1 127 -16 1278 228 37 21 chr1 95833655 95834008 -186359656 + L1MDa LINE L1 1086 1447 -5096 825 183 23 8 chr1 95834008 95834139 -186359525 + FLAM_C SINE Alu 1 133 0 1278 228 37 21 chr1 95834139 95834167 -186359497 + L1MDa LINE L1 1447 1473 -5070 206 152 0 22 chr1 95834167 95834213 -186359451 + GA-rich Low_complexity Low_complexity 1 45 0 239 307 0 0 chr1 95834218 95834306 -186359358 + L1MDa LINE L1 1437 1524 -5019 1232 181 29 0 chr1 95834306 95834538 -186359126 + AluJb SINE Alu 85 312 0 1487 223 106 32 chr1 95834540 95835033 -186358631 + L1MDa LINE L1 1516 2044 -4496 2077 134 0 0 chr1 95835092 95835384 -186358280 + AluJb SINE Alu 12 303 -9 1032 257 61 44 chr1 95835384 95835745 -186357919 - L1MDa LINE L1 -4006 2534 2162 2388 93 3 0 chr1 95835745 95836057 -186357607 - AluSq SINE Alu 0 313 1 1032 257 61 44 chr1 95836057 95836170 -186357494 - L1MDa LINE L1 -4378 2162 2052 1071 287 87 10 chr1 95836199 95836600 -186357064 + ERVL LTR ERVL 4206 4637 -1127 1062 174 0 0 chr1 95836600 95836778 -186356886 + AluJb SINE Alu 131 308 -4 1209 272 17 70 chr1 95836779 95837194 -186356470 + ERVL LTR ERVL 4633 5025 -739 236 255 96 32 chr1 95837224 95837318 -186356346 - MLT1I LTR MaLR -29 380 281 379 211 40 0 chr1 95837395 95837471 -186356193 - MLT1H LTR MaLR -341 208 130 313 282 205 0 chr1 95837662 95837818 -186355846 - MIR SINE MIR -6 256 69 229 325 33 8 chr1 95838074 95838194 -186355470 - L2 LINE L2 -263 3009 2887 1832 164 10 10 chr1 95839193 95839497 -186354167 - AluJo SINE Alu -8 304 1 400 265 271 16 chr1 95839573 95839687 -186353977 + L2 LINE L2 2725 2809 -504 2051 132 114 18 chr1 95839687 95840020 -186353644 - MLT1A1 LTR MaLR 0 365 1 400 265 271 16 chr1 95840020 95840305 -186353359 + L2 LINE L2 2809 3219 -94 351 0 0 0 chr1 95840400 95840439 -186353225 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 3193 158 30 4 chr1 95840616 95841115 -186352549 - MER41E LTR ERV1 0 512 1 372 237 92 0 chr1 95844234 95844365 -186349299 - L1ME4a LINE L1 -4 6117 5975 810 296 59 51 chr1 95844648 95845154 -186348510 - L1ME4a LINE L1 -1985 5823 5314 1144 109 6 0 chr1 95845365 95845521 -186348143 + AluSp SINE Alu 137 293 -20 1548 149 11 0 chr1 95845557 95845819 -186347845 - L1MA8 LINE L1 -2 6289 6025 1879 160 13 20 chr1 95845841 95846147 -186347517 - AluJo SINE Alu -8 304 1 446 286 40 18 chr1 95846466 95846690 -186346974 - L1ME4a LINE L1 -1310 4836 4608 796 257 44 10 chr1 95846734 95846797 -186346867 + MLT1J LTR MaLR 1 60 -451 1821 183 0 7 chr1 95846797 95847097 -186346567 + AluJo SINE Alu 1 298 -14 796 257 44 10 chr1 95847097 95847239 -186346425 + MLT1J LTR MaLR 60 213 -298 3204 102 18 60 chr1 95847246 95847747 -186345917 + MER1A DNA MER1_type 50 529 0 789 241 197 41 chr1 95847754 95848119 -186345545 + LTR16A LTR ERVL 19 440 -10 618 164 129 13 chr1 95848124 95848309 -186345355 + MLT1J LTR MaLR 199 463 -48 26 30 0 0 chr1 95848449 95848482 -186345182 + AT_rich Low_complexity Low_complexity 1 33 0 517 125 11 23 chr1 95848514 95848602 -186345062 - AluJ/FRAM SINE Alu 0 312 226 8105 170 20 9 chr1 95848654 95849256 -186344408 - L1PA16 LINE L1 -3 6163 5569 2148 121 6 13 chr1 95849256 95849569 -186344095 - AluSx SINE Alu -1 311 1 8105 170 20 9 chr1 95849569 95851259 -186342405 - L1PA16 LINE L1 -597 5569 3786 1379 195 101 0 chr1 95851259 95851526 -186342138 - AluJb SINE Alu -18 294 1 8105 170 20 9 chr1 95851526 95851627 -186342037 - L1PA16 LINE L1 -2380 3786 3688 1198 168 0 0 chr1 95851673 95851846 -186341818 - FAM SINE Alu -2 173 1 1998 124 32 3 chr1 95851854 95852136 -186341528 - AluSx SINE Alu -22 290 1 583 218 112 65 chr1 95852154 95852324 -186341340 + MIR SINE MIR 5 182 -80 612 217 60 36 chr1 95852324 95852490 -186341174 - MER93b LTR ERV1 0 373 204 791 167 0 0 chr1 95852492 95852645 -186341019 + FLAM_C SINE Alu 2 154 0 229 224 0 0 chr1 95852646 95852695 -186340969 + (TA)n Simple_repeat Simple_repeat 2 50 0 765 150 21 96 chr1 95852696 95852775 -186340889 - MER93b LTR ERV1 -196 177 94 1731 146 0 0 chr1 95852775 95853028 -186340636 - AluSx SINE Alu -11 301 49 765 150 21 96 chr1 95853028 95853135 -186340529 - MER93b LTR ERV1 -279 94 5 369 173 37 12 chr1 95853141 95853222 -186340442 + MIR SINE MIR 180 262 0 434 311 95 52 chr1 95853389 95853695 -186339969 - MLT1I LTR MaLR -62 347 29 477 289 28 0 chr1 95853976 95854118 -186339546 - MIR SINE MIR -107 155 10 226 254 16 16 chr1 95854222 95854285 -186339379 - MIR3 SINE MIR -8 200 138 265 326 128 27 chr1 95854334 95854521 -186339143 - MLT1J LTR MaLR -69 442 237 329 161 0 0 chr1 95855100 95855156 -186338508 - MER92C LTR ERV1 -8 546 491 425 193 79 89 chr1 95855215 95855317 -186338347 - MER92B LTR ERV1 -375 179 66 2271 116 0 0 chr1 95855317 95855620 -186338044 - AluSx SINE Alu -7 305 3 425 193 79 89 chr1 95855620 95855686 -186337978 - MER92B LTR ERV1 -488 66 1 1805 256 65 22 chr1 95855705 95856307 -186337357 - L1MC4a LINE L1 -1773 6035 5408 1374 154 6 113 chr1 95856353 95856697 -186336967 + AluJo SINE Alu 1 307 -5 260 173 27 80 chr1 95856851 95856926 -186336738 + MER103 DNA DNA 17 87 -79 377 279 0 25 chr1 95858335 95858457 -186335207 + L1ME4a LINE L1 5659 5777 -344 874 223 0 32 chr1 95858480 95858502 -186335162 - AluJo SINE Alu -31 281 260 2988 117 11 28 chr1 95858502 95858898 -186334766 + MSTA LTR MaLR 1 391 -37 2643 45 0 3 chr1 95858898 95859208 -186334456 - AluY SINE Alu -2 309 1 2988 117 11 28 chr1 95859208 95859246 -186334418 + MSTA LTR MaLR 391 428 0 874 223 0 32 chr1 95859246 95859380 -186334284 - AluJo SINE Alu -52 260 130 1367 86 16 5 chr1 95859392 95859579 -186334085 - AluSc SINE Alu -32 277 89 838 174 8 0 chr1 95859592 95859724 -186333940 - AluJo SINE Alu -169 133 1 2196 109 3 0 chr1 95859745 95860047 -186333617 - AluSx SINE Alu -9 303 1 2233 107 3 3 chr1 95860052 95860351 -186333313 - AluSc SINE Alu -10 299 1 401 221 133 25 chr1 95860383 95860541 -186333123 + L1ME4a LINE L1 5945 6119 -2 908 183 168 0 chr1 95862908 95863110 -186330554 + MIR SINE MIR 24 259 -3 327 286 141 41 chr1 95863554 95863844 -186329820 - L2 LINE L2 -963 2351 2033 356 141 205 26 chr1 95864039 95864117 -186329547 - L2 LINE L2 -7 3306 3215 26 0 0 0 chr1 95864585 95864611 -186329053 + AT_rich Low_complexity Low_complexity 1 26 0 1181 158 5 45 chr1 95865107 95865302 -186328362 - AluJo SINE Alu -13 299 98 2464 141 5 16 chr1 95865302 95865670 -186327994 - THE1B LTR MaLR 0 364 1 12578 92 8 1 chr1 95865670 95867239 -186326425 - THE1B-int LTR MaLR 0 1580 1 2230 109 59 42 chr1 95867239 95867597 -186326067 - THE1B LTR MaLR 0 364 1 1181 158 5 45 chr1 95867597 95867621 -186326043 - AluJo SINE Alu -211 101 87 842 173 0 0 chr1 95868562 95868689 -186324975 - FLAM_C SINE Alu -16 127 1 585 93 264 0 chr1 95868921 95869050 -186324614 - MER53 DNA DNA 0 189 27 185 358 0 0 chr1 95869160 95869227 -186324437 - L2 LINE L2 -220 3052 2986 426 306 155 5 chr1 95869234 95869440 -186324224 + MIR SINE MIR 14 250 -12 1650 52 16 0 chr1 95870359 95870553 -186323111 - MER107 DNA MER1_type 0 197 1 2391 90 0 0 chr1 95871728 95872028 -186321636 - AluY SINE Alu -10 301 2 2459 64 0 0 chr1 95872608 95872903 -186320761 + AluSg SINE Alu 1 295 -15 2340 60 0 0 chr1 95873536 95873850 -186319814 - AluY SINE Alu 0 314 1 1024 167 0 6 chr1 95875236 95875404 -186318260 + L1PA16 LINE L1 5993 6159 -7 235 200 22 67 chr1 95875574 95875664 -186318000 + L1MA6 LINE L1 6215 6300 0 30 0 0 0 chr1 95875988 95876018 -186317646 + AT_rich Low_complexity Low_complexity 1 30 0 3066 161 56 78 chr1 95876244 95877014 -186316650 - L1MB8 LINE L1 -9 6169 5417 2225 197 11 23 chr1 95877005 95877477 -186316187 - L1MB8 LINE L1 -1026 5120 4655 * 1670 166 3 6 chr1 95877488 95877802 -186315862 - L1M4 LINE L1 -743 5403 5091 1606 171 8 0 chr1 95877898 95878156 -186315508 - AluSx SINE Alu -52 260 1 4547 207 62 23 chr1 95878156 95879103 -186314561 - L1M4 LINE L1 -838 5308 4304 2299 108 3 0 chr1 95879103 95879400 -186314264 - AluSx SINE Alu -14 298 1 4547 207 62 23 chr1 95879400 95879655 -186314009 - L1M4 LINE L1 -1842 4304 4060 415 303 53 8 chr1 95880001 95880133 -186313531 - MARNA DNA Mariner -89 497 360 540 231 63 131 chr1 95880133 95880401 -186313263 + MIR SINE MIR 12 261 -1 * 623 244 35 46 chr1 95880388 95880585 -186313079 + MIR SINE MIR 68 262 0 1511 171 94 16 chr1 95880726 95881035 -186312629 - MER1B DNA MER1_type -6 333 1 220 258 15 30 chr1 95881929 95881995 -186311669 - L2 LINE L2 -1 3312 3248 225 292 104 31 chr1 95882955 95883051 -186310613 + MIR3 SINE MIR 82 184 -24 1619 169 49 0 chr1 95883064 95883372 -186310292 + L1MB7 LINE L1 5734 6056 -128 316 353 49 57 chr1 95883638 95883882 -186309782 - L2 LINE L2 -1 3271 3030 1968 220 128 1 chr1 95883998 95884779 -186308885 + L1ME1 LINE L1 4969 5826 -340 3532 144 58 38 chr1 95884929 95885111 -186308553 + MER50 LTR ERV1 1 178 -556 2354 65 3 13 chr1 95885111 95885418 -186308246 + AluY SINE Alu 1 304 -7 3532 144 58 38 chr1 95885418 95885785 -186307879 + MER50 LTR ERV1 178 567 -167 2360 98 10 0 chr1 95885785 95886091 -186307573 - AluSg SINE Alu -1 309 1 3532 144 58 38 chr1 95886091 95886191 -186307473 + MER50 LTR ERV1 567 664 -70 1981 146 3 0 chr1 95886643 95886937 -186306727 - AluSx SINE Alu -17 295 1 505 244 128 55 chr1 95887227 95887501 -186306163 + MLT1H LTR MaLR 248 541 -8 251 290 86 0 chr1 95887610 95887703 -186305961 - L1ME LINE L1 -465 5656 5556 1786 192 70 53 chr1 95888722 95889095 -186304569 - MLT1C LTR MaLR 0 467 83 1798 155 3 43 chr1 95889095 95889399 -186304265 - AluJo SINE Alu -15 297 6 1786 192 70 53 chr1 95889399 95889479 -186304185 - MLT1C LTR MaLR -384 83 6 207 298 0 0 chr1 95889487 95889534 -186304130 + MIR SINE MIR 56 102 -160 526 245 104 68 chr1 95890218 95890438 -186303226 - MIR SINE MIR 0 262 31 2927 6 0 6 chr1 95890438 95890756 -186302908 - AluYb8 SINE Alu -2 316 1 526 245 104 68 chr1 95890756 95890784 -186302880 - MIR SINE MIR -231 31 5 446 100 0 0 chr1 95891033 95891093 -186302571 - AluJb SINE Alu -19 293 234 9646 156 62 49 chr1 95891097 95892830 -186300834 + MER52A LTR ERV1 1 1755 0 1701 124 0 4 chr1 95892831 95893064 -186300600 - AluJb SINE Alu -80 232 1 272 264 184 11 chr1 95893217 95893304 -186300360 + MER5B DNA MER1_type 1 102 -76 900 180 73 144 chr1 95893630 95893957 -186299707 - MLT1A1 LTR MaLR -61 304 1 26 50 0 0 chr1 95893961 95894001 -186299663 + AT_rich Low_complexity Low_complexity 1 40 0 2558 148 14 49 chr1 95894052 95894540 -186299124 - L1MB7 LINE L1 -8 6176 5706 469 204 23 0 chr1 95894660 95894748 -186298916 - L1MB7 LINE L1 -503 5675 5586 249 250 0 0 chr1 95894756 95894808 -186298856 + MER5B DNA MER1_type 127 178 0 301 351 117 19 chr1 95894899 95895053 -186298611 + L3 LINE CR1 509 677 -900 29 21 0 21 chr1 95895288 95895317 -186298347 + AT_rich Low_complexity Low_complexity 1 30 -16 827 101 18 0 chr1 95895317 95895426 -186298238 - L1PA10 LINE L1 -4 6164 6054 29 21 0 21 chr1 95895426 95895443 -186298221 + AT_rich Low_complexity Low_complexity 30 46 0 216 0 0 0 chr1 95895462 95895486 -186298178 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 231 204 56 19 chr1 95895497 95895551 -186298113 + L3 LINE CR1 1407 1462 -115 297 0 0 0 chr1 95895571 95895604 -186298060 + (TG)n Simple_repeat Simple_repeat 2 34 0 1549 143 155 8 chr1 95895649 95895900 -186297764 + AluJo SINE Alu 1 288 -14 1862 161 0 7 chr1 95895939 95896238 -186297426 - AluJo SINE Alu -15 297 1 389 206 75 88 chr1 95896457 95896617 -186297047 + L2 LINE L2 3154 3311 -2 2263 104 10 7 chr1 95896632 95896940 -186296724 - AluSq SINE Alu -4 309 1 253 272 11 43 chr1 95897194 95897286 -186296378 + MIR SINE MIR 45 133 -129 480 247 34 45 chr1 95898595 95898773 -186294891 + L2 LINE L2 3137 3312 -1 367 314 19 13 chr1 95898774 95898930 -186294734 - L2 LINE L2 -1318 1996 1840 2020 136 0 22 chr1 95899570 95899887 -186293777 + AluSx SINE Alu 1 310 -2 809 277 19 0 chr1 95900396 95900594 -186293070 - LTR16C LTR ERVL 0 491 290 555 211 16 7 chr1 95900594 95900723 -186292941 + MER33 DNA MER1_type 1 112 -78 360 0 0 0 chr1 95900726 95900766 -186292898 + (TA)n Simple_repeat Simple_repeat 1 40 0 288 257 51 91 chr1 95901270 95901445 -186292219 + MIR SINE MIR 46 213 -49 211 254 30 0 chr1 95901453 95901520 -186292144 + MIR SINE MIR 66 134 -128 2568 61 0 0 chr1 95901587 95901898 -186291766 + AluY SINE Alu 1 311 0 225 336 129 21 chr1 95902613 95902753 -186290911 - L2 LINE L2 -564 2750 2596 2208 79 3 49 chr1 95902892 95903220 -186290444 + AluSq SINE Alu 1 313 0 208 297 55 11 chr1 95905420 95905511 -186288153 + L2 LINE L2 2187 2281 -1033 395 291 18 18 chr1 95905878 95905988 -186287676 + L2 LINE L2 3155 3264 -8 1525 224 93 49 chr1 95906096 95906541 -186287123 - MER77 LTR ERV1 -17 588 196 979 293 139 5 chr1 95906746 95907155 -186286509 + L2 LINE L2 1881 2344 -970 1181 223 19 7 chr1 95907198 95907467 -186286197 - L1MC4 LINE L1 -529 7513 7242 1672 164 49 0 chr1 95907468 95907755 -186285909 - AluSx SINE Alu -6 306 6 1868 150 85 12 chr1 95907760 95908100 -186285564 - L1MC4 LINE L1 -960 7082 6718 496 295 126 29 chr1 95908103 95908381 -186285283 + L2 LINE L2 2918 3222 -91 335 294 88 76 chr1 95908353 95908583 -186285081 + MIR SINE MIR 8 243 -19 * 624 229 78 18 chr1 95908583 95908749 -186284915 - MER5B DNA MER1_type -2 176 1 704 211 80 13 chr1 95909024 95909265 -186284399 + L1MC2 LINE L1 4946 5191 -955 579 137 63 0 chr1 95909369 95909464 -186284200 + HY1 scRNA scRNA 12 112 0 1865 203 44 129 chr1 95909470 95909832 -186283832 + L1MC2 LINE L1 5815 6206 -138 2428 97 0 0 chr1 95909832 95910142 -186283522 + AluSx SINE Alu 1 310 -2 2457 78 0 3 chr1 95910146 95910454 -186283210 + AluY SINE Alu 1 307 -4 1865 203 44 129 chr1 95910454 95910653 -186283011 + L1MC2 LINE L1 6209 6333 -11 1815 165 6 22 chr1 95911686 95912002 -186281662 + AluJb SINE Alu 1 311 -1 187 292 101 0 chr1 95913230 95913319 -186280345 - MIR SINE MIR -70 192 95 217 339 0 0 chr1 95913505 95913564 -186280100 - L3 LINE CR1 -4 1573 1515 327 353 19 6 chr1 95913564 95913584 -186280080 - MIR3 SINE MIR -6 202 184 2413 100 6 0 chr1 95913584 95913895 -186279769 + AluSq SINE Alu 1 313 0 327 353 19 6 chr1 95913895 95913964 -186279700 - MIR3 SINE MIR -24 184 50 1362 203 113 28 chr1 95914026 95914390 -186279274 + MSTD LTR MaLR 2 396 0 223 307 80 11 chr1 95914702 95914790 -186278874 + L2 LINE L2 3151 3244 -28 1736 173 0 4 chr1 95915363 95915640 -186278024 - AluJo SINE Alu -6 306 31 450 213 275 0 chr1 95916738 95916898 -186276766 + MIR SINE MIR 58 261 -1 194 335 98 55 chr1 95916976 95917140 -186276524 - L2 LINE L2 -1 3271 3101 1601 173 20 41 chr1 95917342 95917637 -186276027 - AluJo SINE Alu -22 290 2 456 342 33 8 chr1 95917726 95917966 -186275698 + MIR SINE MIR 2 247 -15 360 284 0 21 chr1 95918128 95918223 -186275441 + L2 LINE L2 2992 3084 -188 447 297 175 24 chr1 95918256 95918707 -186274957 + L2 LINE L2 1792 2310 -1004 502 305 67 14 chr1 95918727 95918950 -186274714 + L2 LINE L2 2475 2709 -605 280 311 206 11 chr1 95919037 95919304 -186274360 + L2 LINE L2 2855 3173 -140 328 294 63 0 chr1 95920096 95920222 -186273442 + MIR SINE MIR 105 238 -24 280 278 120 15 chr1 95920287 95920420 -186273244 + L2 LINE L2 3161 3307 -6 207 188 0 0 chr1 95922100 95922148 -186271516 + (CA)n Simple_repeat Simple_repeat 1 48 0 209 242 211 11 chr1 95922285 95922380 -186271284 + MIR SINE MIR 131 244 -18 1678 119 78 11 chr1 95922387 95922655 -186271009 - AluJb SINE Alu -16 296 11 620 216 0 8 chr1 95923177 95923302 -186270362 - L2 LINE L2 0 3313 3190 1202 107 0 6 chr1 95923353 95923522 -186270142 - AluSg/x SINE Alu -10 302 135 25 0 0 0 chr1 95923530 95923555 -186270109 + AT_rich Low_complexity Low_complexity 1 25 0 2221 119 0 0 chr1 95923555 95923848 -186269816 - AluSx SINE Alu -19 293 1 182 256 54 155 chr1 95923853 95924111 -186269553 - L2 LINE L2 -151 3162 2931 698 228 86 5 chr1 95924162 95924359 -186269305 - L2 LINE L2 -547 2767 2555 327 149 52 184 chr1 95924386 95924507 -186269157 - L2 LINE L2 -598 2716 2623 2840 115 159 37 chr1 95924507 95925054 -186268610 - LTR18B LTR ERVL 0 614 1 327 149 52 184 chr1 95925054 95925106 -186268558 - L2 LINE L2 -691 2623 2566 228 86 0 0 chr1 95925550 95925585 -186268079 + (TA)n Simple_repeat Simple_repeat 1 35 0 865 149 20 31 chr1 95925605 95925800 -186267864 + Charlie5 DNA MER1_type 2432 2624 0 2174 69 0 0 chr1 95926978 95927238 -186266426 - AluY SINE Alu -15 296 37 2526 77 3 0 chr1 95928614 95928914 -186264750 - AluSp SINE Alu -12 301 1 2204 113 3 0 chr1 95928914 95929207 -186264457 - AluSq SINE Alu -19 294 1 488 297 139 36 chr1 95929218 95929548 -186264116 - L2 LINE L2 -21 3292 2929 518 234 81 8 chr1 95929680 95929804 -186263860 - FLAM_A SINE Alu 0 133 1 244 314 45 26 chr1 95932204 95932360 -186261304 - MIR SINE MIR -13 249 91 1690 186 13 16 chr1 95932442 95932748 -186260916 + AluJo SINE Alu 5 309 -3 963 242 72 16 chr1 95933047 95933410 -186260254 - L1MC5 LINE L1 -58 7903 7521 2669 207 48 7 chr1 95933595 95934185 -186259479 + L1MC4a LINE L1 7194 7807 -1 384 22 0 0 chr1 95935274 95935319 -186258345 + (GA)n Simple_repeat Simple_repeat 1 45 0 268 165 0 132 chr1 95935488 95935579 -186258085 - L2 LINE L2 0 3313 3235 844 304 35 21 chr1 95936071 95936410 -186257254 - MLT1J LTR MaLR -167 344 1 243 230 108 0 chr1 95937005 95937079 -186256585 - MIR SINE MIR -74 188 107 410 241 0 27 chr1 95937080 95937192 -186256472 + MIR SINE MIR 154 262 0 201 196 98 20 chr1 95937543 95937594 -186256070 - MIR SINE MIR -180 82 28 2102 109 3 7 chr1 95937777 95938082 -186255582 - AluSc SINE Alu 0 304 1 349 323 75 15 chr1 95938702 95938835 -186254829 - L2 LINE L2 -10 3262 3122 1763 128 4 0 chr1 95938848 95939090 -186254574 - AluSx SINE Alu -69 243 1 204 292 111 49 chr1 95939154 95939298 -186254366 - L2 LINE L2 -15 3257 3105 1220 197 171 79 chr1 95939330 95939797 -186253867 + MLT2B1 LTR ERVL 11 520 0 414 231 0 0 chr1 95939935 95940052 -186253612 + C-rich Low_complexity Low_complexity 1 117 0 198 307 27 0 chr1 95940947 95941022 -186252642 + MIR SINE MIR 50 126 -136 5249 179 52 31 chr1 95941731 95942693 -186250971 - L1MB8 LINE L1 -9 6169 5228 1033 145 0 13 chr1 95942693 95942852 -186250812 - FRAM SINE Alu -7 159 3 5249 179 52 31 chr1 95942852 95943749 -186249915 - L1MB8 LINE L1 -950 5228 4271 2087 133 3 3 chr1 95943749 95944049 -186249615 - AluSx SINE Alu -12 300 1 5249 179 52 31 chr1 95944049 95944157 -186249507 - L1MB8 LINE L1 -1907 4271 4167 2675 255 74 28 chr1 95944127 95944930 -186248734 - L1M4b LINE L1 -5954 905 60 * 4537 67 5 0 chr1 95944930 95945500 -186248164 - L1PA7 LINE L1 -1 6153 5581 2675 255 74 28 chr1 95945500 95945543 -186248121 - L1M4b LINE L1 -6799 60 20 1801 199 58 5 chr1 95945580 95945956 -186247708 + MSTD LTR MaLR 1 396 0 185 295 33 0 chr1 95946125 95946186 -186247478 - L3 LINE CR1 -87 1490 1428 23 0 0 0 chr1 95946606 95946629 -186247035 + AT_rich Low_complexity Low_complexity 1 23 0 505 241 104 38 chr1 95946703 95946915 -186246749 + LTR33 LTR ERVL 1 226 -295 266 268 167 7 chr1 95946945 95947083 -186246581 + LTR33 LTR ERVL 323 482 -39 1323 165 45 39 chr1 95947598 95947907 -186245757 + L1MA9 LINE L1 5997 6307 -5 389 232 143 9 chr1 95948997 95949109 -186244555 + L2 LINE L2 3134 3260 -12 360 247 164 45 chr1 95950025 95950317 -186243347 + L1ME4a LINE L1 5795 6121 0 213 231 0 19 chr1 95951584 95951636 -186242028 + GA-rich Low_complexity Low_complexity 3 53 0 1731 178 0 34 chr1 95954205 95954526 -186239138 - AluJb SINE Alu -2 310 1 590 306 44 16 chr1 95954834 95955082 -186238582 + MIR SINE MIR 8 262 0 2026 134 31 0 chr1 95955997 95956288 -186237376 + AluJo SINE Alu 1 300 -12 1904 165 3 13 chr1 95956289 95956632 -186237032 + AluJb SINE Alu 1 312 0 249 294 0 0 chr1 95957631 95957682 -186235982 + (CG)n Simple_repeat Simple_repeat 1 51 0 280 323 44 38 chr1 95957751 95957909 -186235755 - MER5A DNA MER1_type -23 166 8 229 301 97 29 chr1 95958580 95958683 -186234981 - L2 LINE L2 -46 3226 3117 347 241 55 55 chr1 95958728 95958873 -186234791 - MIR3 SINE MIR -45 163 19 990 165 128 0 chr1 95959420 95959608 -186234056 + AluJb SINE Alu 56 267 -45 635 253 4 86 chr1 95959903 95960160 -186233504 + MIR SINE MIR 21 256 -6 195 100 0 0 chr1 95963711 95963741 -186229923 + (TA)n Simple_repeat Simple_repeat 1 30 0 11977 188 64 45 chr1 95964043 95966297 -186227367 + L1M2 LINE L1 3 2214 -4634 1960 147 32 32 chr1 95966297 95966672 -186226992 + THE1C LTR MaLR 1 375 0 11977 188 64 45 chr1 95966672 95966723 -186226941 + L1M2 LINE L1 2214 2263 -4585 1903 148 156 3 chr1 95966723 95967094 -186226570 + MSTA LTR MaLR 1 428 0 11977 188 64 45 chr1 95967094 95967654 -186226010 + L1M2 LINE L1 2263 2921 -3927 3953 178 40 50 chr1 95967688 95967977 -186225687 + L1MDa LINE L1 2597 2888 -3652 1868 161 0 14 chr1 95967977 95968318 -186225346 + AluJb SINE Alu 1 337 0 3953 178 40 50 chr1 95968318 95969120 -186224544 + L1MDa LINE L1 2888 3674 -2866 1753 112 33 33 chr1 95969118 95969421 -186224243 + L1MDa LINE L1 4002 4304 -2236 * 358 185 25 0 chr1 95969673 95969754 -186223910 + L1ME1 LINE L1 6080 6162 -4 2186 98 31 0 chr1 95969758 95970044 -186223620 - AluSg SINE Alu -15 295 1 325 275 0 55 chr1 95970922 95971031 -186222633 + MER5A DNA MER1_type 86 188 -1 2108 115 7 26 chr1 95971060 95971365 -186222299 + AluSx SINE Alu 1 299 -13 207 285 15 108 chr1 95973439 95973569 -186220095 + L2 LINE L2 3139 3256 -16 2443 62 7 0 chr1 95973835 95974143 -186219521 + AluY SINE Alu 1 310 -1 234 0 0 0 chr1 95974689 95974715 -186218949 + (TG)n Simple_repeat Simple_repeat 2 27 0 624 244 28 31 chr1 95975093 95975269 -186218395 + MER5B DNA MER1_type 1 188 -1 185 253 93 13 chr1 95975307 95975382 -186218282 - L3 LINE CR1 -11 1566 1486 182 36 0 36 chr1 95976640 95976668 -186216996 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 328 127 0 28 chr1 95976844 95976915 -186216749 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 323 278 16 32 chr1 95977403 95977529 -186216135 - L1ME3A LINE L1 -175 5995 5872 2080 102 4 0 chr1 95977893 95978167 -186215497 + AluSx SINE Alu 9 283 -29 204 97 0 0 chr1 95978167 95978198 -186215466 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 7515 37 1 0 chr1 95979068 95980079 -186213585 + L1PA5 LINE L1 5143 6154 0 204 354 30 55 chr1 95980856 95981020 -186212644 + L2 LINE L2 2928 3087 -185 323 251 139 28 chr1 95981815 95981934 -186211730 + MIR SINE MIR 38 167 -62 311 318 149 0 chr1 95981940 95982047 -186211617 - L2 LINE L2 0 3272 3150 244 194 104 15 chr1 95982146 95982213 -186211451 + MIR SINE MIR 79 151 -57 183 298 0 0 chr1 95983244 95983291 -186210373 + L2 LINE L2 3201 3247 -25 949 120 0 0 chr1 95983364 95983497 -186210167 - FLAM_C SINE Alu 0 133 1 1478 117 13 0 chr1 95984059 95984289 -186209375 + L1MB3 LINE L1 5943 6175 -8 4062 154 99 16 chr1 95984377 95985174 -186208490 + MER6 DNA MER2_type 2 864 -1 23 0 0 0 chr1 95985997 95986020 -186207644 + AT_rich Low_complexity Low_complexity 1 23 0 452 286 108 61 chr1 95986504 95986930 -186206734 - L1MC5 LINE L1 -516 7445 7000 874 256 116 16 chr1 95986991 95987561 -186206103 + L1ME3A LINE L1 2889 3515 -2631 845 261 82 3 chr1 95987615 95987921 -186205743 + L1ME3A LINE L1 3595 3924 -2222 704 257 40 116 chr1 95987920 95988516 -186205148 + L1ME3A LINE L1 5612 6162 -8 * 534 142 47 9 chr1 95988763 95988869 -186204795 + L1MB4 LINE L1 6069 6178 -2 219 264 47 57 chr1 95989618 95989724 -186203940 - MER91C DNA MER1_type -29 111 7 314 265 162 20 chr1 95990454 95990658 -186203006 + L1ME4a LINE L1 5883 6115 -6 2160 124 10 0 chr1 95990669 95990976 -186202688 + AluSx SINE Alu 1 310 -2 200 184 0 0 chr1 95991243 95991281 -186202383 + (CA)n Simple_repeat Simple_repeat 1 38 0 371 254 46 39 chr1 95994088 95994218 -186199446 + MIR SINE MIR 59 189 -73 204 273 0 0 chr1 95994750 95994794 -186198870 + CT-rich Low_complexity Low_complexity 4 47 0 660 234 63 24 chr1 95994887 95995092 -186198572 + MIR SINE MIR 50 262 0 363 212 0 61 chr1 95996345 95996444 -186197220 - MIR SINE MIR -76 186 94 2224 98 14 0 chr1 95996850 95997145 -186196519 - AluSq SINE Alu -14 299 1 701 271 92 8 chr1 95997317 95997557 -186196107 - MIR SINE MIR -2 260 1 1470 205 85 24 chr1 95998001 95998406 -186195258 + MLT1E1 LTR MaLR 1 401 -253 402 233 10 10 chr1 95999804 95999907 -186193757 - MIR SINE MIR 0 262 160 501 245 241 8 chr1 95999914 96000256 -186193408 + MLT1L LTR MaLR 148 601 -14 1360 154 5 0 chr1 96001354 96001575 -186192089 - AluJb SINE Alu -4 308 87 180 240 40 0 chr1 96001588 96001638 -186192026 + L2 LINE L2 3216 3267 -5 937 319 103 17 chr1 96001906 96002323 -186191341 - L2 LINE L2 -2 3311 2859 2045 144 56 0 chr1 96002323 96002664 -186191000 + MLT1B LTR MaLR 1 360 -30 1140 305 66 25 chr1 96002721 96003236 -186190428 - L2 LINE L2 -509 2805 2270 896 209 17 0 chr1 96003646 96003818 -186189846 + FAM SINE Alu 1 175 0 1839 145 25 90 chr1 96005630 96006031 -186187633 + THE1C LTR MaLR 1 375 0 184 326 242 0 chr1 96009370 96009502 -186184162 - MIR3 SINE MIR -3 205 42 27 49 0 0 chr1 96009611 96009652 -186184012 + AT_rich Low_complexity Low_complexity 1 41 0 2023 158 0 0 chr1 96010706 96011010 -186182654 - AluJb SINE Alu -8 304 1 379 269 141 13 chr1 96011425 96011574 -186182090 - MIR3 SINE MIR -8 200 33 198 306 0 24 chr1 96011662 96011747 -186181917 - MIR SINE MIR -48 214 132 232 186 17 34 chr1 96011842 96011901 -186181763 - MIR SINE MIR -119 143 86 449 284 167 25 chr1 96012003 96012327 -186181337 + L2 LINE L2 2351 2720 -594 252 241 81 11 chr1 96012412 96012499 -186181165 - MIR SINE MIR -70 192 100 984 259 50 16 chr1 96012922 96013243 -186180421 + MER46C DNA MER2_type 7 338 0 2209 80 35 3 chr1 96013256 96013545 -186180119 + AluSq SINE Alu 1 298 -15 342 268 10 66 chr1 96013557 96013650 -186180014 - L1MCa LINE L1 -4792 1634 1556 1378 108 14 0 chr1 96013650 96013863 -186179801 - L1PB2 LINE L1 0 6151 5936 342 268 10 66 chr1 96013863 96013967 -186179697 - L1MCa LINE L1 -4870 1556 1448 11629 119 52 39 chr1 96013969 96016327 -186177337 + Tigger1 DNA MER2_type 1 2418 0 1196 270 56 27 chr1 96016368 96016882 -186176782 - L1MCa LINE L1 -5768 839 311 310 248 19 57 chr1 96017912 96018017 -186175647 + MIR SINE MIR 4 104 -158 2054 158 31 13 chr1 96018020 96018412 -186175252 - MSTB1 LTR MaLR 0 432 34 8339 186 22 7 chr1 96018434 96020056 -186173608 - MSTB1-int LTR MaLR -6 1645 1 2442 137 22 5 chr1 96020060 96020470 -186173194 - MSTB1 LTR MaLR -15 417 1 538 217 53 26 chr1 96020470 96020622 -186173042 + MIR SINE MIR 103 258 -4 395 300 86 0 chr1 96021213 96021353 -186172311 + MIR SINE MIR 5 156 -106 962 119 15 0 chr1 96021361 96021495 -186172169 + AluJo SINE Alu 1 136 -176 336 83 0 67 chr1 96021497 96021586 -186172078 + Alu SINE Alu 245 302 0 265 217 120 22 chr1 96021594 96021686 -186171978 + MIR SINE MIR 160 260 -2 192 328 0 16 chr1 96021774 96021838 -186171826 - L2 LINE L2 0 3272 3210 291 258 31 94 chr1 96021884 96022012 -186171652 + L2 LINE L2 3153 3272 0 417 81 80 4 chr1 96022686 96022758 -186170906 - THE1C LTR MaLR -280 75 1 332 271 17 34 chr1 96023036 96023154 -186170510 + MER57-int LTR ERV1 2439 2554 -3777 1071 167 0 0 chr1 96023622 96023784 -186169880 + AluJo SINE Alu 137 298 -4 571 13 13 0 chr1 96024302 96024380 -186169284 - L1PB1 LINE L1 -2 6149 6071 1517 162 27 85 chr1 96024411 96024776 -186168888 - MLT1B LTR MaLR -46 344 1 323 223 0 32 chr1 96024780 96024814 -186168850 + HERVL40 LTR ERVL 2710 2744 -2786 2454 84 3 0 chr1 96024814 96025123 -186168541 + AluSg SINE Alu 1 310 0 323 223 0 32 chr1 96025123 96025182 -186168482 + HERVL40 LTR ERVL 2744 2800 -2730 349 242 101 0 chr1 96025477 96025576 -186168088 - MIR SINE MIR -40 222 114 426 271 42 7 chr1 96025687 96025831 -186167833 + MER57-int LTR ERV1 841 989 -4134 586 283 115 4 chr1 96025831 96026057 -186167607 + MER34C LTR ERV1 157 407 -178 2108 200 104 85 chr1 96026058 96026396 -186167268 + MER57-int LTR ERV1 1200 1530 -4801 1296 199 155 37 chr1 96026396 96026803 -186166861 + MSTB2 LTR MaLR 1 455 -2 2108 200 104 85 chr1 96026803 96027696 -186165968 + MER57-int LTR ERV1 1530 2405 -3926 2351 104 3 0 chr1 96027696 96028003 -186165661 + AluSp SINE Alu 5 312 -1 2108 200 104 85 chr1 96028003 96028507 -186165157 + MER57-int LTR ERV1 2405 2898 -3433 2244 154 70 0 chr1 96028507 96028910 -186164754 - MSTB1 LTR MaLR 0 432 2 2108 200 104 85 chr1 96028910 96029054 -186164610 + MER57-int LTR ERV1 2898 3038 -3293 1859 174 0 7 chr1 96029054 96029353 -186164311 + AluJb SINE Alu 1 297 -15 2108 200 104 85 chr1 96029353 96029925 -186163739 + MER57-int LTR ERV1 3038 4935 -1396 598 176 37 22 chr1 96029924 96030060 -186163604 + MER57-int LTR ERV1 3687 3824 -1112 * 596 98 0 0 chr1 96030069 96030151 -186163513 + MSTB1 LTR MaLR 1 82 -344 998 146 38 61 chr1 96030151 96030363 -186163301 + MSTB1 LTR MaLR 226 432 0 2129 203 109 65 chr1 96030363 96031376 -186162288 + MER57-int LTR ERV1 3362 4416 -520 1793 204 14 6 chr1 96031411 96031769 -186161895 + MER57-int LTR ERV1 6784 7144 -393 2274 152 36 72 chr1 96031769 96032296 -186161368 + LTR54 LTR ERV1 1 508 -2 2037 133 3 40 chr1 96032480 96032804 -186160860 - AluSx SINE Alu 0 312 1 2013 157 3 10 chr1 96033792 96034104 -186159560 - AluJb SINE Alu -2 310 1 1685 157 3 56 chr1 96034297 96034603 -186159061 - AluJo SINE Alu -22 290 1 2462 67 3 0 chr1 96034930 96035228 -186158436 + AluY SINE Alu 1 299 -12 228 293 19 9 chr1 96035452 96035558 -186158106 + L1MC4 LINE L1 6595 6701 -1341 * 229 270 67 0 chr1 96035530 96035619 -186158045 - L1MC4 LINE L1 -1339 6703 6609 464 273 91 16 chr1 96038290 96038477 -186155187 - MIR SINE MIR -2 260 60 861 159 79 5 chr1 96038874 96039063 -186154601 - L1MA8 LINE L1 -4 6287 6085 29 60 0 0 chr1 96039133 96039183 -186154481 + AT_rich Low_complexity Low_complexity 1 50 0 256 308 0 0 chr1 96040551 96040616 -186153048 + CT-rich Low_complexity Low_complexity 3 67 0 305 320 56 74 chr1 96040645 96040876 -186152788 - L1MC4a LINE L1 -1766 6042 5816 231 261 0 0 chr1 96041217 96041263 -186152401 - L2 LINE L2 -76 3196 3151 * 234 367 146 28 chr1 96041259 96041326 -186152338 + L2 LINE L2 2521 2579 -693 1520 116 31 5 chr1 96041326 96041550 -186152114 - MER30 DNA MER1_type 0 230 1 234 367 146 28 chr1 96041550 96041993 -186151671 + L2 LINE L2 2579 3091 -181 1950 153 0 0 chr1 96042300 96042595 -186151069 + AluJb SINE Alu 1 295 -17 2323 95 10 0 chr1 96042659 96042955 -186150709 + AluSp SINE Alu 1 299 -14 262 236 90 45 chr1 96043800 96043889 -186149775 + L2 LINE L2 3137 3229 -43 21 0 0 0 chr1 96044408 96044429 -186149235 + AT_rich Low_complexity Low_complexity 1 21 0 1720 192 0 0 chr1 96045020 96045312 -186148352 + AluJo SINE Alu 1 292 -20 197 185 154 46 chr1 96046294 96046359 -186147305 - MIR SINE MIR 0 262 191 496 232 30 104 chr1 96046394 96046722 -186146942 + L1 LINE L1 4755 5058 -1088 422 236 92 17 chr1 96046728 96046902 -186146762 + L1ME3A LINE L1 5143 5329 -817 387 275 82 56 chr1 96047106 96047307 -186146357 + L1ME3A LINE L1 5333 5527 -643 2292 104 0 7 chr1 96047307 96047616 -186146048 - AluSg SINE Alu -3 307 1 387 275 82 56 chr1 96047616 96047958 -186145706 + L1ME3A LINE L1 5527 5947 -223 1599 109 5 0 chr1 96048585 96048796 -186144868 - AluSq SINE Alu -101 212 1 1840 186 0 10 chr1 96048964 96049270 -186144394 - AluJb SINE Alu -7 305 3 242 244 221 47 chr1 96051432 96051518 -186142146 + MER91C DNA MER1_type 8 108 -32 2173 119 0 3 chr1 96051572 96051865 -186141799 + AluSq SINE Alu 12 303 -10 1416 188 184 19 chr1 96051879 96052172 -186141492 - L1MC3 LINE L1 -1 7784 7541 180 0 0 0 chr1 96052172 96052192 -186141472 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1416 188 184 19 chr1 96052192 96052328 -186141336 - L1MC3 LINE L1 -244 7541 7284 * 4300 143 73 21 chr1 96052326 96053135 -186140529 - MSTA-int LTR MaLR -800 851 1 2790 120 29 0 chr1 96053135 96053551 -186140113 - MSTA LTR MaLR 0 428 1 5316 191 76 28 chr1 96053556 96054975 -186138689 - L1MC3 LINE L1 -745 5401 4754 1273 194 78 78 chr1 96054975 96055347 -186138317 + MLT1A2 LTR MaLR 1 372 -2 5316 191 76 28 chr1 96055347 96056644 -186137020 - L1MC3 LINE L1 -1392 4754 3520 27 0 0 0 chr1 96057046 96057073 -186136591 + AT_rich Low_complexity Low_complexity 1 27 0 376 289 42 49 chr1 96058052 96058194 -186135470 + MIR SINE MIR 3 143 -119 375 281 16 33 chr1 96058194 96058315 -186135349 - L2 LINE L2 0 3313 3195 413 274 38 0 chr1 96058327 96058433 -186135231 + MIR SINE MIR 139 248 -14 272 229 104 31 chr1 96058561 96058657 -186135007 + MIR SINE MIR 110 212 -50 2041 134 3 19 chr1 96058930 96059244 -186134420 + AluJo SINE Alu 1 309 -3 334 255 82 20 chr1 96059310 96059408 -186134256 - MIR3 SINE MIR -36 172 69 183 129 0 0 chr1 96060022 96060053 -186133611 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2810 88 0 3 chr1 96060515 96060879 -186132785 - THE1B LTR MaLR -1 363 1 6953 52 34 0 chr1 96061324 96062337 -186131327 - L1PA7 LINE L1 -3 6151 5125 9231 79 10 0 chr1 96062346 96063655 -186130009 - L1PA7 LINE L1 -1131 5015 3694 296 236 11 0 chr1 96063833 96063922 -186129742 + CT-rich Low_complexity Low_complexity 3 92 0 283 73 36 36 chr1 96065374 96065429 -186128235 + (CATA)n Simple_repeat Simple_repeat 2 56 0 26 74 0 0 chr1 96066270 96066324 -186127340 + AT_rich Low_complexity Low_complexity 1 54 0 307 262 163 79 chr1 96066452 96066722 -186126942 - L1M4 LINE L1 -1087 5059 4736 1676 142 91 7 chr1 96066722 96066996 -186126668 - AluSx SINE Alu -15 297 1 307 262 163 79 chr1 96066996 96067167 -186126497 - L1M4 LINE L1 -1410 4736 4581 24 85 0 0 chr1 96067178 96067237 -186126427 + AT_rich Low_complexity Low_complexity 1 59 0 751 101 37 9 chr1 96067480 96067589 -186126075 - HY1 scRNA scRNA 0 112 1 901 282 74 25 chr1 96067694 96068020 -186125644 - L2 LINE L2 0 3313 2972 1821 124 47 34 chr1 96068085 96068265 -186125399 - AluSx SINE Alu -10 302 115 207 0 0 0 chr1 96068265 96068288 -186125376 + (TG)n Simple_repeat Simple_repeat 2 24 0 1821 124 47 34 chr1 96068288 96068405 -186125259 - AluSx SINE Alu -197 115 1 22 0 0 0 chr1 96068528 96068550 -186125114 + AT_rich Low_complexity Low_complexity 1 22 0 774 228 18 66 chr1 96069226 96069527 -186124137 + MLT1F1 LTR MaLR 6 271 -284 2327 103 37 29 chr1 96069637 96070014 -186123650 + Tigger2a DNA MER2_type 2 381 -53 2885 133 20 11 chr1 96070198 96070650 -186123014 + L1PA15 LINE L1 5709 6164 -1 268 262 33 0 chr1 96070820 96070881 -186122783 + Tigger2a DNA MER2_type 382 444 0 685 271 13 0 chr1 96070895 96071050 -186122614 + MLT1F1 LTR MaLR 439 595 0 357 317 96 43 chr1 96071211 96071419 -186122245 + MIR SINE MIR 6 224 -38 2126 111 3 3 chr1 96073565 96073854 -186119810 + AluSc SINE Alu 1 289 -20 194 241 190 0 chr1 96074014 96074072 -186119592 - MIR SINE MIR -21 241 173 229 218 81 105 chr1 96074279 96074337 -186119327 - MIR SINE MIR -61 147 89 14372 54 9 1 chr1 96074337 96076807 -186116857 - L1PA5 LINE L1 -2 6152 3666 229 218 81 105 chr1 96076807 96076872 -186116792 - MIR SINE MIR -119 89 27 333 340 82 16 chr1 96076957 96077128 -186116536 - L2 LINE L2 -8 3264 3069 3654 82 0 0 chr1 96077128 96077569 -186116095 - MLT2A1 LTR ERVL -3 441 1 333 340 82 16 chr1 96077569 96077653 -186116011 - L2 LINE L2 -203 3069 2992 1507 199 36 0 chr1 96077924 96078205 -186115459 - AluJo SINE Alu -21 291 1 2337 129 35 24 chr1 96078427 96078798 -186114866 - THE1C LTR MaLR 0 375 1 1740 78 55 0 chr1 96080337 96080554 -186113110 - MER30 DNA MER1_type 0 230 2 278 333 222 24 chr1 96082471 96082597 -186111067 + L2 LINE L2 3121 3271 -1 212 304 70 35 chr1 96082570 96082685 -186110979 - MIR SINE MIR -84 178 60 * 474 273 134 33 chr1 96083687 96083880 -186109784 - MIR SINE MIR -20 242 30 189 0 0 0 chr1 96084633 96084654 -186109010 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 604 241 20 54 chr1 96084722 96084925 -186108739 + MER112 DNA MER1_type 65 260 0 843 168 69 65 chr1 96086865 96087097 -186106567 + MER112 DNA MER1_type 17 249 -11 2501 148 0 0 chr1 96088672 96089038 -186104626 + MER47A DNA MER2_type 1 366 0 410 300 118 57 chr1 96089556 96089853 -186103811 + L2 LINE L2 2941 3255 -17 2131 89 7 4 chr1 96090011 96090292 -186103372 - AluSq SINE Alu -31 282 1 1158 99 0 0 chr1 96090728 96090879 -186102785 - AluSc SINE Alu -7 302 152 469 185 42 59 chr1 96092315 96092434 -186101230 + MIR SINE MIR 57 173 -89 1072 154 6 0 chr1 96093269 96093431 -186100233 + FRAM SINE Alu 1 160 -16 381 327 124 7 chr1 96093961 96094114 -186099550 - L2 LINE L2 -3 3269 3099 685 311 40 18 chr1 96094201 96094429 -186099235 + MIR SINE MIR 28 260 -2 356 316 36 7 chr1 96094630 96094769 -186098895 - L2 LINE L2 -541 2773 2631 212 86 29 0 chr1 96094896 96094931 -186098733 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 512 269 183 0 chr1 96095234 96095409 -186098255 - MIR SINE MIR 0 262 56 198 0 0 0 chr1 96096893 96096915 -186096749 + (CA)n Simple_repeat Simple_repeat 2 23 0 35 41 0 0 chr1 96096981 96097030 -186096634 + GC_rich Low_complexity Low_complexity 1 49 0 183 42 0 0 chr1 96097367 96097391 -186096273 + (CGG)n Simple_repeat Simple_repeat 2 25 0 700 261 86 120 chr1 96097858 96098333 -186095331 - L3 LINE CR1 -160 1417 959 2241 100 13 0 chr1 96098544 96098853 -186094811 - AluSq SINE Alu 0 313 1 31 0 0 0 chr1 96099091 96099122 -186094542 + AT_rich Low_complexity Low_complexity 1 31 0 2386 93 3 0 chr1 96099130 96099441 -186094223 - AluSp SINE Alu -1 312 1 481 258 246 12 chr1 96099667 96099919 -186093745 - L3 LINE CR1 -625 952 642 195 379 29 43 chr1 96100054 96100194 -186093470 - L2 LINE L2 -1 3271 3134 947 285 37 51 chr1 96100435 96100635 -186093029 - MLT1J2 LTR MaLR -21 429 228 2799 106 0 32 chr1 96100635 96100826 -186092838 - THE1B LTR MaLR 0 364 189 2516 57 3 0 chr1 96100826 96101122 -186092542 - AluY SINE Alu -14 297 1 2799 106 0 32 chr1 96101122 96101306 -186092358 - THE1B LTR MaLR -175 189 1 947 285 37 51 chr1 96101306 96101537 -186092127 - MLT1J2 LTR MaLR -222 228 4 628 285 72 17 chr1 96101616 96101851 -186091813 + MIR SINE MIR 5 252 -10 379 256 0 0 chr1 96102035 96102113 -186091551 - L2 LINE L2 -2 3270 3193 414 198 66 0 chr1 96102174 96102265 -186091399 + LTR33A LTR ERVL 427 523 0 2381 128 27 35 chr1 96102443 96102810 -186090854 - THE1B LTR MaLR 0 364 1 199 167 0 48 chr1 96103137 96103179 -186090485 - L2 LINE L2 -1 3271 3232 310 281 12 12 chr1 96103202 96103284 -186090380 + MIR SINE MIR 13 94 -168 1286 279 92 15 chr1 96103292 96103747 -186089917 + LTR33 LTR ERVL 30 519 -2 4422 97 17 10 chr1 96104193 96104827 -186088837 + MER39B LTR ERV1 1 622 0 3324 147 13 9 chr1 96105029 96105573 -186088091 - L1PA16 LINE L1 -13 6153 5608 734 309 127 43 chr1 96105985 96106901 -186086763 + L2 LINE L2 2013 3075 -197 250 239 254 0 chr1 96107086 96107157 -186086507 + MIR3 SINE MIR 115 203 -5 566 252 63 7 chr1 96107203 96107346 -186086318 + MIR SINE MIR 46 196 -66 479 294 82 10 chr1 96107413 96107607 -186086057 + MIR SINE MIR 47 254 -8 192 77 0 0 chr1 96107623 96107649 -186086015 + (GGA)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr1 96108134 96108157 -186085507 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1807 151 3 37 chr1 96108167 96108466 -186085198 - AluJb SINE Alu -23 289 1 804 291 158 8 chr1 96108572 96109054 -186084610 - MLT1G LTR MaLR 0 590 37 443 299 65 7 chr1 96109356 96109510 -186084154 - L2 LINE L2 -213 3059 2897 215 130 0 78 chr1 96109922 96109999 -186083665 + (TA)n Simple_repeat Simple_repeat 1 71 0 2645 124 25 0 chr1 96110632 96110987 -186082677 - THE1B LTR MaLR 0 364 1 2893 16 0 0 chr1 96111459 96111777 -186081887 - AluYb8 SINE Alu 0 318 1 1854 161 4 0 chr1 96112770 96113086 -186080578 + AluSx SINE Alu 4 320 0 431 189 39 119 chr1 96113094 96113383 -186080281 + L1ME4a LINE L1 5726 6118 -3 2162 131 3 0 chr1 96113396 96113701 -186079963 - AluSx SINE Alu -6 306 1 21 0 0 0 chr1 96115167 96115188 -186078476 + AT_rich Low_complexity Low_complexity 1 21 0 2090 114 45 0 chr1 96115247 96115537 -186078127 + AluSx SINE Alu 1 303 -9 979 206 240 0 chr1 96115790 96116057 -186077607 - MER46C DNA MER2_type -7 331 1 37 39 0 0 chr1 96116563 96116614 -186077050 + AT_rich Low_complexity Low_complexity 1 51 0 417 270 135 69 chr1 96119902 96120206 -186073458 - L1MC4a LINE L1 -1629 6179 5856 2099 126 3 3 chr1 96120206 96120492 -186073172 + AluSx SINE Alu 1 286 -26 1765 186 5 24 chr1 96120518 96120889 -186072775 - MLT1A2 LTR MaLR 0 374 11 310 254 0 0 chr1 96120897 96120968 -186072696 - L1MC4a LINE L1 -1949 5859 5789 186 310 171 5 chr1 96121908 96122095 -186071569 - L2 LINE L2 -1148 2166 1949 24 0 0 0 chr1 96122173 96122197 -186071467 + AT_rich Low_complexity Low_complexity 1 24 0 1451 157 13 13 chr1 96123348 96123584 -186070080 - AluSg/x SINE Alu -7 303 68 411 343 67 46 chr1 96123604 96123995 -186069669 + MLT1K LTR MaLR 167 565 -23 258 179 0 54 chr1 96124216 96124272 -186069392 + MIR SINE MIR 112 164 -98 * 736 289 70 4 chr1 96124255 96124483 -186069181 - MIR SINE MIR 0 262 20 258 313 27 107 chr1 96125174 96125283 -186068381 + L2 LINE L2 3134 3229 -43 1139 125 60 96 chr1 96125283 96125564 -186068100 + ORSL DNA AcHobo 2 272 -3 258 313 27 107 chr1 96125564 96125604 -186068060 + L2 LINE L2 3229 3271 -1 24 0 0 0 chr1 96125816 96125840 -186067824 + AT_rich Low_complexity Low_complexity 1 24 0 880 250 86 59 chr1 96130652 96130941 -186062723 + L1MEc LINE L1 1833 2113 -4283 2133 139 0 10 chr1 96130941 96131251 -186062413 + AluSx SINE Alu 1 307 -5 880 250 86 59 chr1 96131251 96131521 -186062143 + L1MEc LINE L1 2113 2407 -3989 2170 93 28 7 chr1 96131697 96131988 -186061676 + AluSg SINE Alu 1 297 -13 210 267 200 11 chr1 96132029 96132119 -186061545 - MIR3 SINE MIR -98 110 4 505 241 23 10 chr1 96132153 96132351 -186061313 - L1MEc LINE L1 -4484 2028 1741 210 156 0 0 chr1 96132351 96132383 -186061281 + T-rich Low_complexity Low_complexity 5 36 0 819 165 17 6 chr1 96132383 96132559 -186061105 + CT-rich Low_complexity Low_complexity 3 180 0 2068 290 77 40 chr1 96132599 96134155 -186059509 - L1MEc LINE L1 -4748 1859 247 258 305 49 0 chr1 96134462 96134544 -186059120 + L2 LINE L2 3180 3265 -48 199 365 73 10 chr1 96134605 96134701 -186058963 - MIR SINE MIR -6 256 155 217 235 0 20 chr1 96134936 96134987 -186058677 + (CCA)n Simple_repeat Simple_repeat 1 50 0 2118 123 16 7 chr1 96135496 96135806 -186057858 - AluSq SINE Alu 0 313 1 666 37 0 0 chr1 96135823 96135904 -186057760 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 687 272 149 46 chr1 96135918 96136482 -186057182 - L2 LINE L2 -39 3274 2593 474 302 67 27 chr1 96136870 96137095 -186056569 - MIR SINE MIR -11 251 18 395 225 19 111 chr1 96137104 96137267 -186056397 + MER5A DNA MER1_type 1 161 -28 2053 92 22 4 chr1 96137277 96137549 -186056115 - AluSq SINE Alu 0 313 37 256 294 163 12 chr1 96138259 96138419 -186055245 - L2 LINE L2 -11 3302 3119 438 258 102 23 chr1 96138672 96138928 -186054736 + MER102b DNA MER1_type 62 337 -4 305 275 80 71 chr1 96139321 96139527 -186054137 - L1MC4 LINE L1 -29 8013 7810 1745 185 7 0 chr1 96139527 96139843 -186053821 + AluJb SINE Alu 1 318 0 305 275 80 71 chr1 96139843 96140606 -186053058 - L1MC4 LINE L1 -232 7810 7098 36521 85 5 13 chr1 96140655 96146847 -186046817 + L1PA6 LINE L1 10 6154 0 249 240 40 10 chr1 96146844 96146944 -186046720 - L1MC5 LINE L1 -899 7062 6960 * 1192 264 50 36 chr1 96146947 96147391 -186046273 - L1MC4a LINE L1 -807 7001 6552 936 121 36 0 chr1 96147412 96147552 -186046112 + AluSq/x SINE Alu 1 145 -167 1976 183 5 28 chr1 96148127 96148526 -186045138 - MLT1B LTR MaLR 0 390 1 358 263 55 49 chr1 96149017 96149164 -186044500 - MIR SINE MIR -67 141 1 615 252 59 43 chr1 96149236 96149490 -186044174 + MIR SINE MIR 5 262 0 230 298 53 0 chr1 96150462 96150519 -186043145 + MIR SINE MIR 26 85 -177 1750 224 98 81 chr1 96150525 96151112 -186042552 - MLT1E2 LTR MaLR 0 624 2 326 202 274 32 chr1 96151113 96151237 -186042427 + MIR SINE MIR 108 261 -1 242 307 64 0 chr1 96151245 96151385 -186042279 + L1MC4a LINE L1 5800 5948 -1860 2054 46 92 14 chr1 96151393 96151675 -186041989 - AluY SINE Alu -7 304 1 403 275 108 32 chr1 96151803 96152054 -186041610 + L1MDa LINE L1 2352 2621 -3919 248 51 0 26 chr1 96152277 96152316 -186041348 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1104 85 55 0 chr1 96152316 96152480 -186041184 - L1PB1 LINE L1 -51 6100 5928 324 302 125 35 chr1 96153959 96154270 -186039394 + L2 LINE L2 2975 3313 0 461 270 46 26 chr1 96155189 96155341 -186038323 - L2 LINE L2 0 3313 3159 367 299 197 0 chr1 96155887 96156034 -186037630 + MIR SINE MIR 86 261 -1 240 367 127 7 chr1 96156348 96156498 -186037166 - L2 LINE L2 -2 3270 3103 189 0 0 0 chr1 96157872 96157893 -186035771 + (CA)n Simple_repeat Simple_repeat 1 21 0 221 157 22 56 chr1 96160443 96160532 -186033132 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 508 222 118 7 chr1 96160532 96160685 -186032979 + MER112 DNA MER1_type 90 259 -1 1981 106 0 0 chr1 96161011 96161265 -186032399 + AluSg SINE Alu 14 267 -43 271 355 38 16 chr1 96161935 96162118 -186031546 + L2 LINE L2 3086 3272 0 199 314 0 0 chr1 96162498 96162549 -186031115 + L2 LINE L2 3258 3308 -5 431 122 14 0 chr1 96162663 96162737 -186030927 - MER116 DNA Mariner 0 80 6 2319 105 0 16 chr1 96163008 96163322 -186030342 + AluSx SINE Alu 1 309 -3 231 279 27 27 chr1 96163329 96163440 -186030224 - MER103 DNA DNA -54 112 2 252 275 39 97 chr1 96163790 96163997 -186029667 - MIR SINE MIR 0 262 68 568 274 121 11 chr1 96164025 96164215 -186029449 - MIR SINE MIR 0 262 52 725 227 97 22 chr1 96164795 96164980 -186028684 - MIR SINE MIR 0 262 64 566 169 144 25 chr1 96165640 96165758 -186027906 - FLAM_C SINE Alu -1 132 1 591 266 60 27 chr1 96166003 96166187 -186027477 + MIR SINE MIR 71 260 -2 226 217 0 0 chr1 96166307 96166353 -186027311 + L2 LINE L2 3268 3313 0 180 125 0 0 chr1 96166353 96166385 -186027279 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 96167150 96167172 -186026492 + AT_rich Low_complexity Low_complexity 1 22 0 781 265 85 0 chr1 96167533 96167756 -186025908 - L3b LINE CR1 -57 1526 1285 3288 126 49 116 chr1 96167963 96168283 -186025381 + L1MA6 LINE L1 5113 5453 -850 1731 158 84 0 chr1 96168283 96168567 -186025097 + AluSx SINE Alu 1 308 -4 3288 126 49 116 chr1 96168567 96168578 -186025086 + L1MA6 LINE L1 5453 5463 -840 2323 104 0 0 chr1 96168578 96168886 -186024778 + AluSc SINE Alu 2 309 0 3288 126 49 116 chr1 96168886 96169361 -186024303 + L1MA6 LINE L1 5463 5827 -476 1783 162 30 7 chr1 96169361 96169663 -186024001 + AluJb SINE Alu 1 309 -3 3288 126 49 116 chr1 96169663 96169934 -186023730 + L1MA6 LINE L1 5827 6114 -189 283 277 89 27 chr1 96169984 96170096 -186023568 + MER5B DNA MER1_type 1 119 -59 2173 123 13 0 chr1 96171436 96171745 -186021919 - AluSq SINE Alu 0 313 1 271 187 220 0 chr1 96172182 96172273 -186021391 - MIR SINE MIR 0 262 152 24 32 0 0 chr1 96172364 96172395 -186021269 + AT_rich Low_complexity Low_complexity 1 31 0 2388 97 0 7 chr1 96172978 96173286 -186020378 + AluSx SINE Alu 1 306 -6 524 277 43 32 chr1 96173935 96173947 -186019717 - MIR SINE MIR -46 216 206 2263 168 8 6 chr1 96173947 96174311 -186019353 + MLT1A1 LTR MaLR 1 365 0 524 277 43 32 chr1 96174311 96174486 -186019178 - MIR SINE MIR -56 206 27 521 273 93 0 chr1 96175229 96175368 -186018296 - MIR SINE MIR -109 153 2 1073 253 64 23 chr1 96175948 96176340 -186017324 + Tigger8 DNA MER2_type 172 579 -87 283 205 39 13 chr1 96178035 96178113 -186015551 + GA-rich Low_complexity Low_complexity 5 84 0 497 303 75 58 chr1 96178170 96178411 -186015253 + MIR SINE MIR 18 262 0 1856 191 68 31 chr1 96178411 96178793 -186014871 + MSTD LTR MaLR 1 396 0 532 263 42 21 chr1 96179391 96179581 -186014083 + MIR SINE MIR 7 200 -62 439 254 35 63 chr1 96179625 96179767 -186013897 - MIR3 SINE MIR -48 160 23 184 286 158 47 chr1 96180069 96180240 -186013424 + L3b LINE CR1 1278 1467 -116 377 340 19 6 chr1 96180543 96180699 -186012965 - MIR SINE MIR -56 206 49 205 328 0 0 chr1 96180931 96180995 -186012669 + MIR3 SINE MIR 144 207 -1 325 194 16 0 chr1 96181104 96181166 -186012498 - MER103 DNA DNA -41 125 63 802 232 18 0 chr1 96181603 96181771 -186011893 - MER5A DNA MER1_type -4 185 15 180 0 0 0 chr1 96183051 96183071 -186010593 + (CA)n Simple_repeat Simple_repeat 2 21 0 281 311 201 66 chr1 96183840 96184174 -186009490 - L2 LINE L2 -1 3271 2893 194 339 82 46 chr1 96184687 96184882 -186008782 + L2 LINE L2 2887 3088 -184 1826 244 98 14 chr1 96185114 96185649 -186008015 + MLT1H1 LTR MaLR 5 553 -2 198 0 0 0 chr1 96186579 96186601 -186007063 + (T)n Simple_repeat Simple_repeat 1 22 0 348 341 30 22 chr1 96187360 96187495 -186006169 + L2 LINE L2 3136 3271 -1 551 126 11 0 chr1 96188382 96188477 -186005187 + (TCC)n Simple_repeat Simple_repeat 3 98 0 2235 126 0 0 chr1 96189137 96189447 -186004217 + AluSx SINE Alu 1 310 -2 244 311 33 0 chr1 96189499 96189560 -186004104 + L2 LINE L2 3163 3225 -47 773 309 0 36 chr1 96189596 96189845 -186003819 - MIR SINE MIR 0 262 23 2635 148 5 13 chr1 96189917 96190310 -186003354 + MLT1B LTR MaLR 1 390 0 1942 146 17 0 chr1 96190387 96190682 -186002982 + AluSx SINE Alu 1 300 -12 572 229 195 20 chr1 96190979 96191271 -186002393 - L1ME4a LINE L1 -12 6109 5767 260 210 65 0 chr1 96191333 96191395 -186002269 + L1ME LINE L1 5565 5630 -491 183 340 0 0 chr1 96191430 96191480 -186002184 + L2 LINE L2 3029 3078 -235 3516 268 70 22 chr1 96191524 96192961 -186000703 + L1MEc LINE L1 577 2082 -4314 776 323 36 0 chr1 96193367 96193618 -186000046 + MIR SINE MIR 3 262 0 322 283 43 0 chr1 96193744 96193836 -185999828 + MIR SINE MIR 42 137 -71 2250 192 39 22 chr1 96194710 96195169 -185998495 + MLT1C LTR MaLR 1 467 0 4811 256 50 25 chr1 96195194 96196190 -185997474 + L1MEc LINE L1 34 1004 -5392 2067 114 4 4 chr1 96196190 96196500 -185997164 + AluSc SINE Alu 1 310 0 4811 256 50 25 chr1 96196500 96196884 -185996780 + L1MEc LINE L1 1004 1377 -5019 2022 122 27 7 chr1 96196884 96197180 -185996484 + AluSx SINE Alu 1 302 -10 4811 256 50 25 chr1 96197180 96197213 -185996451 + L1MEc LINE L1 1377 1408 -4988 2074 122 7 24 chr1 96197213 96197508 -185996156 + AluSg SINE Alu 1 290 -20 4811 256 50 25 chr1 96197508 96197661 -185996003 + L1MEc LINE L1 1408 1641 -4755 684 222 40 20 chr1 96197677 96197875 -185995789 + L1MD3 LINE L1 7784 7985 -10 650 201 174 23 chr1 96197876 96198095 -185995569 + L1MEc LINE L1 1629 1880 -4516 2364 103 0 0 chr1 96198097 96198409 -185995255 + AluSq SINE Alu 1 312 -1 1737 174 47 0 chr1 96198522 96198820 -185994844 + AluJb SINE Alu 1 312 0 496 235 168 0 chr1 96198828 96199007 -185994657 + L1MEc LINE L1 2251 2459 -3756 249 200 0 18 chr1 96199018 96199073 -185994591 - MLT2B1 LTR ERVL -3 517 464 243 146 0 0 chr1 96199073 96199114 -185994550 + (TG)n Simple_repeat Simple_repeat 2 42 0 1716 206 87 28 chr1 96199119 96199556 -185994108 - MLT2B1 LTR ERVL -55 465 3 2472 110 22 28 chr1 96199557 96199920 -185993744 + THE1B LTR MaLR 1 361 -3 2566 221 97 0 chr1 96199923 96200607 -185993057 + L1MEc LINE L1 2450 3199 -3016 239 308 90 0 chr1 96201244 96201322 -185992342 + L2 LINE L2 3142 3226 -46 334 297 90 0 chr1 96202377 96202488 -185991176 - MIR SINE MIR -71 191 71 297 68 0 0 chr1 96202651 96202695 -185990969 + (CA)n Simple_repeat Simple_repeat 1 44 0 536 283 89 6 chr1 96203259 96203439 -185990225 + MIR SINE MIR 20 214 -48 234 62 0 0 chr1 96204086 96204118 -185989546 + (T)n Simple_repeat Simple_repeat 1 32 0 258 367 41 14 chr1 96204746 96204893 -185988771 + MIR SINE MIR 64 214 -48 201 268 0 0 chr1 96205045 96205086 -185988578 - MIR3 SINE MIR -50 158 118 228 269 0 0 chr1 96205381 96205433 -185988231 - MIR SINE MIR -17 245 194 259 301 26 80 chr1 96206202 96206249 -185987415 - MIR3 SINE MIR -8 200 152 541 258 96 72 chr1 96206249 96206582 -185987082 + MER102b DNA MER1_type 1 341 0 259 301 26 80 chr1 96206582 96206647 -185987017 - MIR3 SINE MIR -56 152 94 213 250 0 19 chr1 96206959 96207011 -185986653 + L2 LINE L2 3203 3253 -19 912 96 0 0 chr1 96207064 96207179 -185986485 + AluSq/x SINE Alu 3 117 -196 22 35 0 0 chr1 96207190 96207219 -185986445 + AT_rich Low_complexity Low_complexity 1 29 0 1711 163 31 7 chr1 96207256 96207574 -185986090 + AluJb SINE Alu 1 312 0 378 275 108 0 chr1 96208035 96208155 -185985509 + MIR SINE MIR 2 134 -128 1709 55 0 0 chr1 96208172 96208373 -185985291 + L1PA4 LINE L1 5955 6155 0 21 36 0 0 chr1 96208373 96208401 -185985263 + AT_rich Low_complexity Low_complexity 1 28 0 253 361 17 8 chr1 96208402 96208521 -185985143 + MIR SINE MIR 137 256 -6 242 276 31 10 chr1 96208601 96208699 -185984965 - MIR SINE MIR -116 146 47 21 0 0 0 chr1 96209181 96209202 -185984462 + GC_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr1 96209253 96209286 -185984378 + (CCG)n Simple_repeat Simple_repeat 2 34 0 22 56 0 0 chr1 96209402 96209438 -185984226 + GC_rich Low_complexity Low_complexity 1 36 0 789 166 178 0 chr1 96209820 96209977 -185983687 + MER5A DNA MER1_type 1 185 -4 306 0 0 0 chr1 96212760 96212794 -185980870 + (CA)n Simple_repeat Simple_repeat 2 35 0 573 28 0 0 chr1 96212826 96212897 -185980767 + (CA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr1 96216325 96216347 -185977317 + AT_rich Low_complexity Low_complexity 1 22 0 262 245 136 26 chr1 96218384 96218516 -185975148 + MIR3 SINE MIR 3 151 -94 562 283 140 5 chr1 96219027 96219124 -185974540 + L2 LINE L2 2533 2616 -697 668 240 156 91 chr1 96219124 96219683 -185973981 + MLT1G1 LTR MaLR 1 595 0 562 283 140 5 chr1 96219683 96220051 -185973613 + L2 LINE L2 2616 3068 -245 22997 136 33 11 chr1 96220086 96222408 -185971256 + L1M1 LINE L1 17 2286 -5279 2283 106 63 20 chr1 96222408 96222757 -185970907 + THE1B LTR MaLR 1 364 0 22997 136 33 11 chr1 96222757 96223519 -185970145 + L1M1 LINE L1 2286 3030 -4535 2026 145 0 0 chr1 96223519 96223839 -185969825 + AluSx SINE Alu 1 320 0 22997 136 33 11 chr1 96223839 96224581 -185969083 + L1M1 LINE L1 3030 3934 -3631 433 263 38 6 chr1 96224678 96224838 -185968826 + L1M1 LINE L1 3903 4067 -3498 4204 110 38 3 chr1 96224839 96225477 -185968187 + L1MA2 LINE L1 5645 6304 0 185 198 185 37 chr1 96225490 96225571 -185968093 + L2 LINE L2 3111 3203 -110 1634 126 0 0 chr1 96225580 96225803 -185967861 + AluSc SINE Alu 87 309 0 324 164 18 0 chr1 96226109 96226164 -185967500 - MLT1J LTR MaLR -6 505 450 439 159 0 0 chr1 96226169 96226238 -185967426 + AluJ/FLAM SINE Alu 5 73 -239 716 218 18 7 chr1 96226295 96226444 -185967220 - MLT1J LTR MaLR -336 146 1 218 272 25 49 chr1 96226479 96226560 -185967104 - L2 LINE L2 -178 3094 3016 2230 157 118 5 chr1 96226769 96227184 -185966480 - MLT2C2 LTR ERVL 0 464 3 310 289 130 53 chr1 96227792 96227878 -185965786 + Charlie8 DNA MER1_type 1 79 -262 1653 179 4 7 chr1 96227878 96228157 -185965507 + AluJo SINE Alu 1 278 -34 333 0 0 0 chr1 96228157 96228194 -185965470 + (CA)n Simple_repeat Simple_repeat 2 38 0 310 289 130 53 chr1 96228194 96228352 -185965312 + Charlie8 DNA MER1_type 78 265 -76 2202 103 10 7 chr1 96228374 96228675 -185964989 + AluSx SINE Alu 1 302 -10 225 0 0 0 chr1 96228705 96228730 -185964934 + (TG)n Simple_repeat Simple_repeat 1 25 0 195 42 0 0 chr1 96229865 96229889 -185963775 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 450 0 0 0 chr1 96229888 96229938 -185963726 + (CA)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr1 96230011 96230036 -185963628 + AT_rich Low_complexity Low_complexity 1 25 0 684 230 63 16 chr1 96230520 96230711 -185962953 + MLT1L LTR MaLR 416 615 0 247 331 86 45 chr1 96230840 96231109 -185962555 - L2 LINE L2 -1 3271 2992 2177 123 9 23 chr1 96232204 96232553 -185961111 - MER2 DNA MER2_type 0 344 1 513 240 64 35 chr1 96232572 96232743 -185960921 - MER104 DNA MER2_type 0 180 5 339 297 36 29 chr1 96232744 96232882 -185960782 + L2 LINE L2 3133 3271 -1 214 292 58 33 chr1 96233701 96233821 -185959843 - L2 LINE L2 -1 3271 3149 395 352 95 41 chr1 96234794 96235308 -185958356 - L3 LINE CR1 -14 1563 1022 201 303 0 0 chr1 96235494 96235560 -185958104 + L2 LINE L2 3202 3267 -5 252 289 35 9 chr1 96235623 96235737 -185957927 - L3 LINE CR1 -644 933 817 501 240 163 70 chr1 96235737 96236177 -185957487 - MLT1H LTR MaLR -19 530 1 243 345 55 7 chr1 96236369 96236514 -185957150 - MIR SINE MIR -109 153 2 246 207 0 0 chr1 96237920 96237978 -185955686 + (CA)n Simple_repeat Simple_repeat 1 58 0 582 240 40 7 chr1 96239087 96239237 -185954427 + MIR SINE MIR 108 262 0 232 267 109 24 chr1 96240709 96240915 -185952749 + L2 LINE L2 2952 3254 -18 635 194 118 43 chr1 96241050 96241236 -185952428 - MIR SINE MIR 0 262 63 1946 131 0 22 chr1 96241299 96241611 -185952053 - L1MB3 LINE L1 -9 6174 5870 22 56 0 0 chr1 96241619 96241655 -185952009 + AT_rich Low_complexity Low_complexity 1 36 0 334 282 35 31 chr1 96241741 96241933 -185951731 - L1MC4a LINE L1 -104 6017 5821 250 172 138 0 chr1 96241950 96242008 -185951656 + L1ME3A LINE L1 6097 6162 -8 679 200 130 33 chr1 96242038 96242253 -185951411 - L1ME3A LINE L1 -8 6162 5927 680 184 52 81 chr1 96242266 96242464 -185951200 - AluJo SINE Alu 0 310 118 240 279 51 0 chr1 96242466 96242545 -185951119 - L1ME3A LINE L1 -248 5922 5840 350 270 104 0 chr1 96244600 96244715 -185948949 - MIR3 SINE MIR -30 178 52 2396 100 3 0 chr1 96245137 96245447 -185948217 + AluSp SINE Alu 1 311 -2 350 258 26 28 chr1 96245875 96245984 -185947680 - MIR3 SINE MIR -20 188 79 443 278 107 12 chr1 96246684 96246905 -185946759 - MIR SINE MIR -10 252 13 188 0 74 0 chr1 96247088 96247115 -185946549 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr1 96247188 96247211 -185946453 + (TTTCC)n Simple_repeat Simple_repeat 2 24 0 23 92 0 0 chr1 96248430 96248495 -185945169 + AT_rich Low_complexity Low_complexity 1 65 0 2527 69 0 7 chr1 96250200 96250506 -185943158 - AluY SINE Alu -7 304 1 295 301 106 16 chr1 96250537 96250660 -185943004 - L2 LINE L2 -2 3270 3137 235 286 26 26 chr1 96250716 96250793 -185942871 - MIR SINE MIR -74 134 58 326 238 10 20 chr1 96251256 96251357 -185942307 - MIR SINE MIR -12 250 151 470 295 72 28 chr1 96251421 96251672 -185941992 + MIR SINE MIR 1 262 0 2179 268 101 38 chr1 96251919 96252002 -185941662 + L1MEd LINE L1 56 132 -5987 360 0 0 0 chr1 96252002 96252042 -185941622 + (CA)n Simple_repeat Simple_repeat 2 41 0 2179 268 101 38 chr1 96252042 96252956 -185940708 + L1MEd LINE L1 132 1116 -5003 193 261 87 51 chr1 96253152 96253290 -185940374 - L2 LINE L2 -62 3251 3109 1240 283 81 52 chr1 96253356 96254024 -185939640 - L2 LINE L2 -343 2971 2285 1632 157 58 17 chr1 96255038 96255331 -185938333 + AluSx SINE Alu 1 305 -7 36 40 0 0 chr1 96256088 96256138 -185937526 + AT_rich Low_complexity Low_complexity 1 50 0 681 307 134 20 chr1 96256362 96256860 -185936804 - L1MC4a LINE L1 -1873 5935 5381 1094 95 0 95 chr1 96257133 96257312 -185936352 - L1PA8A LINE L1 0 6131 5970 325 257 35 35 chr1 96258066 96258179 -185935485 - L2 LINE L2 0 3313 3201 579 335 108 26 chr1 96258204 96258790 -185934874 - L2 LINE L2 -530 2784 2151 2287 102 3 13 chr1 96259547 96259852 -185933812 - AluSg SINE Alu -8 302 1 203 192 0 19 chr1 96260980 96261032 -185932632 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 183 129 0 0 chr1 96261055 96261086 -185932578 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr1 96261428 96261460 -185932204 + AT_rich Low_complexity Low_complexity 1 32 0 749 270 116 97 chr1 96262004 96262191 -185931473 + L3 LINE CR1 978 1160 -417 2273 118 0 0 chr1 96262191 96262497 -185931167 + AluSg SINE Alu 1 306 -4 749 270 116 97 chr1 96262497 96262886 -185930778 + L3 LINE CR1 1160 1565 -12 23 33 0 0 chr1 96263079 96263109 -185930555 + AT_rich Low_complexity Low_complexity 1 30 0 523 310 134 13 chr1 96263385 96263624 -185930040 - MLT1K LTR MaLR -140 448 181 1500 218 39 36 chr1 96264355 96264767 -185928897 + MLT2D LTR ERVL 1 413 -1 21 0 0 0 chr1 96264811 96264832 -185928832 + AT_rich Low_complexity Low_complexity 1 21 0 606 229 77 29 chr1 96265462 96265632 -185928032 + MLT1J LTR MaLR 1 178 -333 23 33 0 0 chr1 96267344 96267374 -185926290 + AT_rich Low_complexity Low_complexity 1 30 0 2621 118 23 8 chr1 96267489 96267886 -185925778 + MSTA LTR MaLR 1 403 -25 371 264 35 75 chr1 96267899 96268055 -185925609 + MIR SINE MIR 26 175 -33 882 253 120 33 chr1 96268062 96268362 -185925302 + HsTC2a DNA Tc2 64 389 -355 1261 224 34 31 chr1 96268364 96268691 -185924973 + L1M2a LINE L1 -779 363 -5950 230 357 77 30 chr1 96268785 96268953 -185924711 + L1M2a LINE L1 872 1047 -5266 5567 214 70 70 chr1 96268968 96270930 -185922734 + L1M2a LINE L1 800 2555 -3827 1970 158 0 13 chr1 96270930 96271109 -185922555 - AluSx SINE Alu 0 312 137 2106 97 52 3 chr1 96271109 96271399 -185922265 - AluSq SINE Alu -9 304 1 1970 158 0 13 chr1 96271399 96271535 -185922129 - AluSx SINE Alu -175 137 1 5567 214 70 70 chr1 96271535 96273146 -185920518 + L1M2a LINE L1 2555 4164 -2218 44393 36 1 3 chr1 96273150 96279305 -185914359 + L1PA3 LINE L1 7 6152 -3 4685 144 90 26 chr1 96279314 96279713 -185913951 + L1M2a LINE L1 4148 4520 -1862 2414 83 0 0 chr1 96279713 96280013 -185913651 - AluY SINE Alu -10 301 2 4685 144 90 26 chr1 96280013 96280602 -185913062 + L1M2a LINE L1 4520 5199 -1183 302 269 131 51 chr1 96281611 96281786 -185911878 + MLT1K LTR MaLR 376 564 -24 1678 151 46 109 chr1 96281820 96282278 -185911386 - MSTB1 LTR MaLR -3 429 1 1990 137 0 23 chr1 96282520 96282820 -185910844 - AluSg SINE Alu -17 293 1 1074 191 139 40 chr1 96284769 96285042 -185908622 + AluJo SINE Alu 1 300 -2 197 290 97 0 chr1 96285887 96285949 -185907715 + L2 LINE L2 3139 3206 -66 201 284 69 49 chr1 96285991 96286093 -185907571 + MIR SINE MIR 95 198 -64 228 286 78 0 chr1 96286151 96286243 -185907421 - MIR SINE MIR -73 135 54 2234 106 0 7 chr1 96289513 96289814 -185903850 - AluY SINE Alu -12 299 1 239 65 0 0 chr1 96289874 96289905 -185903759 + Alu SINE Alu 1 31 -102 2148 114 7 0 chr1 96290041 96290339 -185903325 + AluSp SINE Alu 4 303 -10 25 0 0 0 chr1 96292280 96292305 -185901359 + AT_rich Low_complexity Low_complexity 1 25 0 205 254 0 79 chr1 96292423 96292486 -185901178 + MIR3 SINE MIR 113 170 -38 650 280 40 0 chr1 96292679 96292854 -185900810 + MIR SINE MIR 32 213 -49 320 250 43 11 chr1 96293782 96293874 -185899790 + MIR3 SINE MIR 112 206 -2 193 197 76 45 chr1 96294529 96294595 -185899069 + MIR SINE MIR 119 186 -76 279 297 133 40 chr1 96294733 96294946 -185898718 + MIR SINE MIR 3 228 -34 233 294 15 29 chr1 96294967 96295035 -185898629 - L2 LINE L2 -14 3299 3233 2956 166 15 8 chr1 96295116 96295955 -185897709 - L1PA12 LINE L1 -4124 3460 2619 1695 122 72 0 chr1 96295955 96296234 -185897430 + L1PA13 LINE L1 5865 6163 0 1852 124 4 0 chr1 96296283 96296541 -185897123 - AluSx SINE Alu -16 296 38 1108 111 21 85 chr1 96296674 96296739 -185896925 - L1MA9 LINE L1 -6 6306 6238 915 96 7 22 chr1 96296739 96296874 -185896790 - FLAM_C SINE Alu 0 133 1 1108 111 21 85 chr1 96296874 96297043 -185896621 - L1MA9 LINE L1 -74 6238 6087 384 295 89 37 chr1 96297301 96297491 -185896173 - MIR3 SINE MIR -2 206 7 * 478 155 0 36 chr1 96297483 96297567 -185896097 - L2 LINE L2 0 3272 3192 191 303 0 15 chr1 96298679 96298745 -185894919 + MIR SINE MIR 195 259 -3 1158 230 166 16 chr1 96298855 96299097 -185894567 - Charlie2 DNA MER1_type -4 2858 2654 1982 133 3 50 chr1 96299097 96299419 -185894245 + AluSx SINE Alu 1 307 -5 252 0 0 0 chr1 96299419 96299447 -185894217 + (TA)n Simple_repeat Simple_repeat 2 29 0 1158 230 166 16 chr1 96299447 96299690 -185893974 - Charlie2 DNA MER1_type -207 2655 2299 361 274 15 88 chr1 96300381 96300585 -185893079 + MER5A DNA MER1_type 1 189 0 299 324 119 43 chr1 96301220 96301405 -185892259 + L2 LINE L2 3073 3271 -1 1080 189 36 27 chr1 96301622 96301844 -185891820 + MER58A DNA MER1_type 1 224 0 204 125 0 0 chr1 96301888 96301920 -185891744 + (TA)n Simple_repeat Simple_repeat 2 33 0 204 200 0 0 chr1 96302374 96302414 -185891250 - MIR SINE MIR -7 255 216 209 306 135 9 chr1 96302471 96302582 -185891082 - L2 LINE L2 -963 2351 2227 789 196 0 20 chr1 96302780 96302928 -185890736 + FRAM SINE Alu 12 156 -20 349 250 136 29 chr1 96303106 96303246 -185890418 - MIR SINE MIR -20 242 88 213 276 79 13 chr1 96303671 96303747 -185889917 + L2 LINE L2 2438 2518 -796 262 333 121 0 chr1 96304626 96304725 -185888939 + L2 LINE L2 3162 3272 0 813 158 0 8 chr1 96305762 96305895 -185887769 - FLAM_C SINE Alu 0 133 2 8308 107 40 19 chr1 96306842 96307515 -185886149 - Tigger1 DNA MER2_type -1085 1333 675 2582 56 3 0 chr1 96307515 96307817 -185885847 + AluSp SINE Alu 1 303 -10 8308 107 40 19 chr1 96307817 96308439 -185885225 - Tigger1 DNA MER2_type -1743 675 11 701 289 69 24 chr1 96309370 96309616 -185884048 - MIR SINE MIR 0 262 6 902 235 61 20 chr1 96309766 96310013 -185883651 + MIR SINE MIR 3 259 -3 260 318 0 26 chr1 96310659 96310810 -185882854 + G-rich Low_complexity Low_complexity 4 150 0 2351 92 0 0 chr1 96311309 96311601 -185882063 - AluY SINE Alu -15 296 5 350 284 134 46 chr1 96312175 96312332 -185881332 + MIR SINE MIR 42 221 -41 1945 139 0 37 chr1 96312332 96312656 -185881008 + AluSx SINE Alu 1 312 0 350 284 134 46 chr1 96312656 96312692 -185880972 + MIR SINE MIR 221 252 -10 1748 92 0 0 chr1 96313197 96313414 -185880250 + AluSc SINE Alu 83 299 -10 872 213 53 76 chr1 96313474 96313737 -185879927 - MIR SINE MIR 0 262 6 360 291 67 30 chr1 96314204 96314369 -185879295 + MLT1L LTR MaLR 445 615 0 396 233 107 53 chr1 96315054 96315260 -185878404 + MER20 DNA MER1_type 2 218 -1 226 323 88 62 chr1 96315624 96315850 -185877814 + L2 LINE L2 2828 3059 -213 197 268 94 81 chr1 96316031 96316097 -185877567 + MER5A DNA MER1_type 1 65 -124 2281 90 0 0 chr1 96316097 96316386 -185877278 + AluSx SINE Alu 1 289 -23 197 268 94 81 chr1 96316386 96316477 -185877187 + MER5A DNA MER1_type 65 188 -1 356 159 48 0 chr1 96316489 96316552 -185877112 - MIR SINE MIR -103 159 94 22 56 0 0 chr1 96316572 96316608 -185877056 + AT_rich Low_complexity Low_complexity 1 36 0 1640 162 44 0 chr1 96316968 96317240 -185876424 + AluSx SINE Alu 1 284 -28 1671 111 0 0 chr1 96317241 96317457 -185876207 + AluSx SINE Alu 2 217 -95 472 258 114 62 chr1 96318582 96318888 -185874776 + L1MEd LINE L1 826 1147 -5058 339 243 27 18 chr1 96318934 96319045 -185874619 + L1MEd LINE L1 1362 1473 -4923 2123 118 0 28 chr1 96319590 96319911 -185873753 - AluSx SINE Alu 0 312 1 1598 161 9 41 chr1 96319950 96320266 -185873398 + AluJo SINE Alu 1 306 -6 278 212 0 15 chr1 96320361 96320427 -185873237 + L1ME4a LINE L1 5984 6048 -73 604 182 45 0 chr1 96320648 96320785 -185872879 - L1ME3A LINE L1 -279 5899 5752 2243 78 7 45 chr1 96322043 96322352 -185871312 - AluY SINE Alu -14 297 1 1865 163 3 7 chr1 96322965 96323259 -185870405 + AluJb SINE Alu 5 297 -15 2245 92 0 16 chr1 96323265 96323568 -185870096 + AluY SINE Alu 1 298 -13 23 33 0 0 chr1 96323688 96323718 -185869946 + AT_rich Low_complexity Low_complexity 1 30 0 911 198 22 45 chr1 96323817 96324039 -185869625 - MER20 DNA MER1_type 0 219 3 747 213 28 52 chr1 96324398 96324609 -185869055 + MER106A DNA MER1_type 1 206 -30 756 268 87 44 chr1 96324969 96325428 -185868236 + L1ME4a LINE L1 5385 5863 -258 1469 176 75 7 chr1 96325607 96325886 -185867778 - AluJo SINE Alu -14 298 1 1537 179 7 17 chr1 96326420 96326711 -185866953 + AluSx SINE Alu 5 292 -20 323 252 175 10 chr1 96326853 96326956 -185866708 - MIR SINE MIR -94 168 49 2349 88 0 0 chr1 96327188 96327484 -185866180 + AluY SINE Alu 1 296 -15 496 118 0 26 chr1 96327609 96327685 -185865979 - AluJo SINE Alu -14 298 225 256 245 0 0 chr1 96327685 96327734 -185865930 - AluJo SINE Alu -153 149 101 582 254 40 96 chr1 96327799 96328225 -185865439 - L1ME4a LINE L1 -237 5884 5483 2338 53 0 56 chr1 96328283 96328603 -185865061 - AluY SINE Alu -9 302 1 261 254 169 25 chr1 96329167 96329285 -185864379 - L1ME4a LINE L1 -1524 4622 4488 271 187 133 13 chr1 96329916 96329991 -185863673 - L1MC4 LINE L1 -11 8031 7948 519 230 97 6 chr1 96330155 96330320 -185863344 + MER46C DNA MER2_type 80 259 -79 254 240 107 40 chr1 96330372 96330447 -185863217 - MIR SINE MIR -26 236 157 196 255 39 0 chr1 96330656 96330707 -185862957 - L3 LINE CR1 -646 931 879 310 158 0 35 chr1 96330871 96330928 -185862736 + MER20 DNA MER1_type 1 55 -164 551 334 51 14 chr1 96331022 96331393 -185862271 + L1MC4a LINE L1 5513 5897 -1911 300 235 24 12 chr1 96331506 96331591 -185862073 + L1ME4a LINE L1 5964 6049 -72 214 346 118 15 chr1 96331623 96331759 -185861905 - MIR SINE MIR -1 261 112 1703 146 0 0 chr1 96332249 96332495 -185861169 - AluSx SINE Alu -21 291 46 258 302 86 17 chr1 96332679 96332795 -185860869 - MIR3 SINE MIR -25 183 60 395 293 167 0 chr1 96333205 96333355 -185860309 + MER5A DNA MER1_type 9 183 -6 267 31 0 0 chr1 96333375 96333407 -185860257 + (CA)n Simple_repeat Simple_repeat 2 33 0 323 204 235 0 chr1 96333415 96333513 -185860151 - MER5C DNA MER1_type -203 121 1 537 261 171 22 chr1 96333767 96333989 -185859675 - MIR SINE MIR 0 262 8 266 261 0 29 chr1 96334224 96334293 -185859371 + 7SK RNA RNA 1 67 -126 1407 285 48 15 chr1 96334785 96335873 -185857791 + L1ME3A LINE L1 4697 5825 -337 250 280 110 8 chr1 96335883 96336001 -185857663 + L1ME3A LINE L1 5988 6117 -53 998 292 117 34 chr1 96336393 96336645 -185857019 + L2 LINE L2 2505 2735 -578 1982 145 0 7 chr1 96336645 96336949 -185856715 - AluJb SINE Alu -10 302 1 998 292 117 34 chr1 96336949 96337445 -185856219 + L2 LINE L2 2735 3308 -5 23 54 0 0 chr1 96337962 96337999 -185855665 + AT_rich Low_complexity Low_complexity 1 37 0 306 314 15 51 chr1 96340216 96340353 -185853311 + MIR SINE MIR 99 230 -32 213 336 35 49 chr1 96340596 96340739 -185852925 + MIR SINE MIR 99 239 -23 2313 180 81 4 chr1 96340906 96341427 -185852237 - L1M4 LINE L1 -364 5797 5237 1001 246 142 77 chr1 96341429 96341717 -185851947 + MLT1F LTR MaLR 1 269 -273 1702 188 41 44 chr1 96341717 96342106 -185851558 + MLT1B LTR MaLR 3 390 0 1001 246 142 77 chr1 96342106 96342325 -185851339 + MLT1F LTR MaLR 269 541 -1 1102 186 34 23 chr1 96342333 96342438 -185851226 - L1M4 LINE L1 -905 5224 5122 2156 94 20 13 chr1 96342438 96342736 -185850928 - AluSx SINE Alu -12 300 1 1102 186 34 23 chr1 96342736 96342893 -185850771 - L1M4 LINE L1 -1007 5122 4959 293 217 108 24 chr1 96342897 96342980 -185850684 + MER8 DNA MER2_type 2 91 -148 2380 208 76 12 chr1 96343085 96343612 -185850052 - L1M4 LINE L1 -1179 4950 4373 2006 134 0 26 chr1 96343612 96343919 -185849745 - AluJb SINE Alu -13 299 1 2380 208 76 12 chr1 96343919 96344036 -185849628 - L1M4 LINE L1 -1756 4373 4265 242 205 116 36 chr1 96344058 96344170 -185849494 - L1M4 LINE L1 -2374 3755 3635 258 337 72 6 chr1 96344171 96344337 -185849327 - L1M4 LINE L1 -5022 1097 921 2244 116 0 0 chr1 96344414 96344717 -185848947 - AluSq SINE Alu -10 303 1 4680 150 17 30 chr1 96345662 96346656 -185847008 - MER11C LTR ERVK 0 1071 1 383 288 53 53 chr1 96346736 96346906 -185846758 + MER5A DNA MER1_type 20 189 0 1518 135 43 23 chr1 96346922 96347156 -185846508 + MER33 DNA MER1_type 1 244 -2341 1983 141 17 0 chr1 96347156 96347455 -185846209 - AluSx SINE Alu -5 307 4 1518 135 43 23 chr1 96347455 96347523 -185846141 + MER33 DNA MER1_type 244 309 -15 256 367 25 25 chr1 96347639 96347835 -185845829 + L2 LINE L2 2659 2854 -460 225 0 0 0 chr1 96347927 96347952 -185845712 + (TG)n Simple_repeat Simple_repeat 2 26 0 349 306 103 83 chr1 96348122 96348423 -185845241 - L2 LINE L2 -27 3245 2939 936 191 86 24 chr1 96348447 96348770 -185844894 + MSTD LTR MaLR 6 365 0 31 68 0 0 chr1 96349256 96349315 -185844349 + AT_rich Low_complexity Low_complexity 1 59 0 2273 113 3 0 chr1 96349811 96350122 -185843542 + AluSx SINE Alu 1 312 0 324 209 75 134 chr1 96350738 96350925 -185842739 - MER69A DNA AcHobo 0 177 2 927 243 93 18 chr1 96351203 96351464 -185842200 + L1MEc LINE L1 1361 1662 -4734 1652 157 45 7 chr1 96351464 96351750 -185841914 + AluJb SINE Alu 3 299 -13 927 243 93 18 chr1 96351750 96351875 -185841789 + L1MEc LINE L1 1662 1776 -4620 21 0 0 0 chr1 96351875 96351896 -185841768 + AT_rich Low_complexity Low_complexity 1 21 0 437 263 43 60 chr1 96351923 96352155 -185841509 + L1MEc LINE L1 1864 2091 -4305 304 261 52 26 chr1 96352187 96352302 -185841362 + L1ME LINE L1 477 594 -5936 456 278 62 82 chr1 96352879 96352939 -185840725 + L1ME LINE L1 1285 1345 -5232 2129 119 7 3 chr1 96352939 96353242 -185840422 + AluSx SINE Alu 1 304 -8 456 278 62 82 chr1 96353242 96353726 -185839938 + L1ME LINE L1 1345 1846 -4731 2140 116 7 0 chr1 96353726 96354045 -185839619 + AluSx SINE Alu 1 321 0 456 278 62 82 chr1 96354045 96354304 -185839360 + L1ME LINE L1 1846 2109 -4468 * 988 183 37 11 chr1 96354298 96354516 -185839148 + L1 LINE L1 5081 5307 -865 207 0 0 0 chr1 96354516 96354539 -185839125 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 988 183 37 11 chr1 96354539 96354557 -185839107 + L1 LINE L1 5307 5323 -849 * 2011 139 30 6 chr1 96354551 96355023 -185838641 + L1MA4 LINE L1 5127 5608 -692 743 119 0 119 chr1 96355025 96355185 -185838479 + L1MA4 LINE L1 6154 6294 -6 419 167 0 0 chr1 96355390 96355462 -185838202 - AluS SINE Alu -13 296 225 1923 149 0 30 chr1 96355491 96355792 -185837872 - AluSx SINE Alu -13 299 8 1084 244 81 41 chr1 96355834 96356311 -185837353 + L1ME LINE L1 2365 2839 -3701 786 244 24 29 chr1 96356311 96356520 -185837144 - MER63A DNA MER1_type 0 210 3 1084 244 81 41 chr1 96356520 96356666 -185836998 + L1ME LINE L1 2839 2978 -3562 267 333 40 20 chr1 96356774 96356873 -185836791 - MIR SINE MIR -92 116 16 2321 93 3 3 chr1 96356929 96357230 -185836434 - AluSp SINE Alu -12 301 1 36 40 0 0 chr1 96357332 96357382 -185836282 + AT_rich Low_complexity Low_complexity 1 50 0 521 238 100 25 chr1 96357523 96357683 -185835981 - MIR SINE MIR -7 255 84 3197 153 8 22 chr1 96358015 96358602 -185835062 - L1MB4 LINE L1 -7 6173 5595 189 254 0 0 chr1 96358602 96358673 -185834991 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 759 208 6 6 chr1 96358687 96358846 -185834818 - L1MB4 LINE L1 -575 5605 5447 1414 269 122 53 chr1 96358849 96359581 -185834083 - MER21B LTR ERV1 -81 782 1 2447 178 31 19 chr1 96359585 96359641 -185834023 - L1MB4 LINE L1 -733 5447 5393 1919 175 0 7 chr1 96359641 96359949 -185833715 - AluJo SINE Alu -6 306 1 2447 178 31 19 chr1 96359949 96360513 -185833151 - L1MB4 LINE L1 -787 5393 4823 208 290 48 0 chr1 96362213 96362275 -185831389 + MIR SINE MIR 172 236 -26 289 360 39 7 chr1 96362810 96362963 -185830701 - MIR3 SINE MIR 0 208 51 357 174 69 90 chr1 96363483 96363627 -185830037 + MIR SINE MIR 86 226 -36 2474 75 3 0 chr1 96363656 96363964 -185829700 - AluY SINE Alu -2 309 1 197 119 24 0 chr1 96364032 96364074 -185829590 + T-rich Low_complexity Low_complexity 3 45 0 316 302 154 13 chr1 96364146 96364295 -185829369 + MIR SINE MIR 86 255 -7 1240 188 5 5 chr1 96364741 96364964 -185828700 - MER58A DNA MER1_type -1 223 1 2096 131 0 3 chr1 96365018 96365316 -185828348 - AluSx SINE Alu -15 297 1 216 0 0 0 chr1 96365321 96365345 -185828319 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2221 119 0 0 chr1 96365345 96365638 -185828026 - AluSx SINE Alu -19 293 1 266 125 21 0 chr1 96365851 96365899 -185827765 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 827 198 32 78 chr1 96366531 96366748 -185826916 + MER63A DNA MER1_type 1 207 -3 275 306 0 0 chr1 96366985 96367057 -185826607 + L2 LINE L2 3242 3313 0 238 227 45 0 chr1 96367318 96367384 -185826280 + A-rich Low_complexity Low_complexity 3 71 0 219 200 0 83 chr1 96367410 96367470 -185826194 - MIR3 SINE MIR -31 177 123 420 269 67 8 chr1 96367479 96367613 -185826051 + MIR SINE MIR 101 242 -20 191 239 22 22 chr1 96367645 96367691 -185825973 - MIR SINE MIR -139 69 24 2172 123 0 3 chr1 96368998 96369299 -185824365 - AluSx SINE Alu -12 300 1 755 152 164 18 chr1 96370300 96370465 -185823199 - MER5A DNA MER1_type 0 189 1 2642 254 161 45 chr1 96370861 96371895 -185821769 + L2 LINE L2 347 1500 -1814 1200 167 0 36 chr1 96371897 96372118 -185821546 - AluSq SINE Alu -25 288 76 1634 97 4 45 chr1 96372230 96372477 -185821187 + AluSq SINE Alu 76 312 -1 331 320 70 50 chr1 96372549 96372808 -185820856 - L1MEd LINE L1 -5343 776 513 3676 293 42 19 chr1 96373142 96373456 -185820208 + L2 LINE L2 1826 2131 -1182 2237 103 3 7 chr1 96373456 96373758 -185819906 - AluSc SINE Alu -5 304 4 3676 293 42 19 chr1 96373758 96374123 -185819541 + L2 LINE L2 2131 2486 -827 889 71 79 8 chr1 96374123 96374250 -185819414 + MER85 DNA T2_type 1 136 -3 3676 293 42 19 chr1 96374250 96374854 -185818810 + L2 LINE L2 2486 3136 -177 230 161 0 18 chr1 96375212 96375268 -185818396 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr1 96377378 96377399 -185816265 + AT_rich Low_complexity Low_complexity 1 21 0 553 311 60 50 chr1 96377744 96378127 -185815537 - L2 LINE L2 -40 3273 2887 3859 214 62 36 chr1 96378327 96378431 -185815233 - Charlie1a DNA MER1_type -1307 1454 1354 2415 80 0 13 chr1 96378431 96378742 -185814922 - AluSx SINE Alu -5 307 1 3859 214 62 36 chr1 96378742 96379734 -185813930 - Charlie1a DNA MER1_type -1407 1354 330 43054 30 21 1 chr1 96379848 96385876 -185807788 + L1HS LINE L1 1 6154 -1 2909 230 69 9 chr1 96385891 96386736 -185806928 + L1MB3 LINE L1 947 1841 -4543 5138 167 19 34 chr1 96386737 96387460 -185806204 + L1MB3 LINE L1 4903 5635 -784 2241 99 3 0 chr1 96387460 96387753 -185805911 + AluSx SINE Alu 1 294 -18 5138 167 19 34 chr1 96387753 96388561 -185805103 + L1MB3 LINE L1 5635 6417 -2 289 284 131 28 chr1 96388584 96388760 -185804904 + L1MC/D LINE L1 5611 5804 -2004 394 213 126 55 chr1 96388767 96388894 -185804770 - Charlie1a DNA MER1_type -1214 241 106 256 172 109 0 chr1 96388983 96389047 -185804617 + L2 LINE L2 3194 3264 -8 625 235 45 49 chr1 96389996 96390131 -185803533 + MER112 DNA MER1_type 6 141 -119 796 178 6 50 chr1 96390131 96390311 -185803353 - L1MB5 LINE L1 0 6174 6003 625 235 45 49 chr1 96390311 96390418 -185803246 + MER112 DNA MER1_type 141 247 -13 180 328 49 0 chr1 96390611 96390672 -185802992 - L2 LINE L2 -92 3221 3158 1611 133 128 0 chr1 96391375 96391662 -185802002 - AluSx SINE Alu 0 319 1 301 344 82 0 chr1 96392423 96392545 -185801119 - MIR SINE MIR -14 248 117 2058 136 0 3 chr1 96394452 96394747 -185798917 + AluSx SINE Alu 1 294 -18 2332 92 0 16 chr1 96394796 96395113 -185798551 - AluSx SINE Alu 0 312 1 464 146 67 56 chr1 96395468 96395557 -185798107 - MER20 DNA MER1_type -55 164 75 450 0 0 0 chr1 96395774 96395824 -185797840 + (CA)n Simple_repeat Simple_repeat 2 51 0 357 384 20 7 chr1 96395897 96396043 -185797621 + MIR3 SINE MIR 34 181 -27 620 184 0 52 chr1 96396088 96396224 -185797440 - FLAM_A SINE Alu -6 136 8 1375 208 49 3 chr1 96396741 96396863 -185796801 + AluJo SINE Alu 1 116 -196 300 83 0 0 chr1 96396863 96396911 -185796753 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1375 208 49 3 chr1 96396911 96397072 -185796592 + AluJo SINE Alu 116 297 -15 2035 144 3 13 chr1 96397404 96397717 -185795947 + AluSx SINE Alu 3 312 0 2210 89 4 0 chr1 96398142 96398454 -185795210 + AluY SINE Alu 1 313 0 859 276 212 26 chr1 96399177 96399824 -185793840 - L2 LINE L2 -2 3311 2550 420 313 125 29 chr1 96399937 96400145 -185793519 - L3 LINE CR1 -2 1575 1348 348 303 0 0 chr1 96400353 96400442 -185793222 - L3 LINE CR1 -255 1322 1234 543 233 136 57 chr1 96400476 96400755 -185792909 - L2 LINE L2 -8 3305 3005 274 253 93 28 chr1 96401002 96401180 -185792484 - L3 LINE CR1 -364 1213 977 241 189 33 89 chr1 96401803 96401893 -185791771 + L1MA9 LINE L1 6121 6205 -107 5331 54 1 0 chr1 96402429 96403097 -185790567 - L1PA7 LINE L1 -8 6146 5478 279 0 0 0 chr1 96403097 96403128 -185790536 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 21063 79 2 0 chr1 96403128 96406832 -185786832 - L1PA2 LINE L1 -11 6144 2507 256 377 0 0 chr1 96406886 96406955 -185786709 - L2 LINE L2 -56 3257 3189 1403 197 29 10 chr1 96407432 96407742 -185785922 - L1M4 LINE L1 -3171 2975 2660 310 328 86 23 chr1 96407793 96408049 -185785615 - L1ME4a LINE L1 -175 5946 5675 2165 108 0 0 chr1 96408255 96408564 -185785100 - AluSc SINE Alu 0 311 3 527 280 109 58 chr1 96408597 96409111 -185784553 - L1MC4a LINE L1 -73 6048 5509 446 0 19 0 chr1 96409342 96409396 -185784268 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 25 0 0 0 chr1 96409434 96409459 -185784205 + AT_rich Low_complexity Low_complexity 1 25 0 1465 202 4 0 chr1 96409459 96409721 -185783943 - AluJo SINE Alu -49 263 1 2303 104 3 0 chr1 96409924 96410222 -185783442 - AluSq SINE Alu -14 299 1 1072 166 36 31 chr1 96410312 96410535 -185783129 - AluJo SINE Alu -3 309 86 465 258 157 63 chr1 96410698 96410966 -185782698 + MLT1L LTR MaLR 305 597 -18 21 36 0 0 chr1 96411278 96411306 -185782358 + AT_rich Low_complexity Low_complexity 1 28 0 332 320 47 23 chr1 96411892 96412020 -185781644 + MIR SINE MIR 61 191 -71 363 185 173 0 chr1 96413059 96413140 -185780524 + MIR SINE MIR 118 212 -50 1950 138 0 21 chr1 96413417 96413706 -185779958 - AluSx SINE Alu -29 283 1 473 60 0 0 chr1 96413715 96413782 -185779882 - L1PA4 LINE L1 -4 6151 6085 1162 28 21 0 chr1 96413782 96413924 -185779740 + L1PA4 LINE L1 5757 5901 -254 266 306 53 39 chr1 96414994 96415200 -185778464 + L1MC4 LINE L1 7832 8040 -2 1874 178 3 3 chr1 96416040 96416349 -185777315 - AluJo SINE Alu -3 309 1 1100 228 89 0 chr1 96418268 96418514 -185775150 + Cheshire DNA MER1_type 5 272 -2148 13415 104 10 30 chr1 96418519 96419405 -185774259 - L1PA10 LINE L1 0 6168 5266 2286 102 0 3 chr1 96419405 96419709 -185773955 - AluY SINE Alu -8 303 1 13415 104 10 30 chr1 96419709 96421858 -185771806 - L1PA10 LINE L1 -902 5266 3161 3449 193 90 47 chr1 96421862 96422773 -185770891 + Cheshire DNA MER1_type 269 1218 -1202 1737 174 53 27 chr1 96422773 96423147 -185770517 + Cheshire DNA MER1_type 1773 2156 -264 538 205 109 24 chr1 96423271 96423481 -185770183 + Cheshire DNA MER1_type 2176 2403 -17 193 371 33 40 chr1 96423585 96423723 -185769941 - L2 LINE L2 -1 3312 3174 1665 163 0 80 chr1 96423723 96424060 -185769604 + AluJo SINE Alu 3 312 0 193 371 33 40 chr1 96424060 96424072 -185769592 - L2 LINE L2 -139 3174 3163 405 198 26 0 chr1 96424721 96424837 -185768827 + GA-rich Low_complexity Low_complexity 2 120 0 32 26 0 0 chr1 96426061 96426100 -185767564 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr1 96426143 96426167 -185767497 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 96426727 96426764 -185766900 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr1 96427041 96427073 -185766591 + AT_rich Low_complexity Low_complexity 1 32 0 314 238 139 10 chr1 96427895 96427996 -185765668 + L2 LINE L2 3200 3313 0 322 286 0 20 chr1 96428049 96428147 -185765517 - MIR SINE MIR -37 225 130 2389 73 0 25 chr1 96428236 96428552 -185765112 + AluY SINE Alu 1 308 -3 319 357 211 16 chr1 96428552 96428874 -185764790 - L2 LINE L2 -3 3269 2885 * 943 280 20 4 chr1 96428872 96429122 -185764542 + MIR SINE MIR 9 262 0 1857 150 3 29 chr1 96429229 96429536 -185764128 + AluJo SINE Alu 1 299 -13 582 15 0 0 chr1 96430532 96430599 -185763065 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr1 96431075 96431097 -185762567 + AT_rich Low_complexity Low_complexity 1 22 0 270 342 147 19 chr1 96431473 96431786 -185761878 + L2 LINE L2 1605 1957 -1357 452 289 22 0 chr1 96431789 96431924 -185761740 - LTR67 LTR ERVL -2 555 418 374 356 40 48 chr1 96431958 96432208 -185761456 - LTR67 LTR ERVL -215 342 95 1579 299 142 29 chr1 96432380 96432567 -185761097 + L2 LINE L2 1967 2131 -1183 1179 289 82 29 chr1 96432567 96433058 -185760606 + LTR33 LTR ERVL 1 517 -4 1579 299 142 29 chr1 96433058 96433776 -185759888 + L2 LINE L2 2131 2975 -339 1752 223 86 34 chr1 96433914 96434471 -185759193 - L1ME1 LINE L1 -4 6162 5577 1815 133 68 0 chr1 96434504 96434812 -185758852 + AluSg SINE Alu 1 326 0 1166 205 111 16 chr1 96434814 96435200 -185758464 - L1ME1 LINE L1 -1598 4548 4126 270 146 0 0 chr1 96435216 96435257 -185758407 - L1ME1 LINE L1 -1997 4149 4109 2209 114 42 25 chr1 96435794 96436152 -185757512 - THE1B LTR MaLR 0 364 1 406 323 50 81 chr1 96436165 96436192 -185757472 + L1M4 LINE L1 3996 4022 -2124 1457 208 39 3 chr1 96436192 96436476 -185757188 - AluJo SINE Alu -16 296 3 406 323 50 81 chr1 96436476 96436844 -185756820 + L1M4 LINE L1 4022 4379 -1767 609 256 54 6 chr1 96436909 96437086 -185756578 + MIR SINE MIR 68 253 -9 2466 62 0 3 chr1 96437130 96437435 -185756229 + AluY SINE Alu 1 304 -7 338 257 57 45 chr1 96437479 96437724 -185755940 + L1M4 LINE L1 4545 4792 -1354 1341 180 75 7 chr1 96437724 96438002 -185755662 - MER58B DNA MER1_type 0 341 45 258 200 171 0 chr1 96438089 96438159 -185755505 + LTR33 LTR ERVL 4 85 -436 255 272 58 87 chr1 96438473 96438679 -185754985 + HERVL LTR ERVL 1169 1368 -4396 1585 313 107 60 chr1 96438842 96440050 -185753614 + HERVL LTR ERVL 1621 2885 -2879 2294 147 88 176 chr1 96440060 96440857 -185752807 - LTR8A LTR ERV1 0 727 1 294 68 55 27 chr1 96441085 96441158 -185752506 + (TA)n Simple_repeat Simple_repeat 1 75 0 1185 181 24 8 chr1 96441158 96441408 -185752256 - L1MB3 LINE L1 -35 6144 5884 1972 178 6 89 chr1 96441431 96441849 -185751815 + MER41B LTR ERV1 150 522 -113 1871 158 113 40 chr1 96441849 96442247 -185751417 + MSTA LTR MaLR 1 427 -1 1972 178 6 89 chr1 96442247 96442322 -185751342 + MER41B LTR ERV1 522 602 -33 1111 170 29 98 chr1 96442356 96442667 -185750997 - L1MB3 LINE L1 -247 5936 5650 1611 174 13 62 chr1 96442740 96443124 -185750540 - L1MB3 LINE L1 -494 5689 5325 1639 343 55 23 chr1 96443126 96444276 -185749388 + HERVL LTR ERVL 3051 4314 -1450 2846 3 0 3 chr1 96444875 96445187 -185748477 - AluYa5 SINE Alu 0 311 1 279 297 10 10 chr1 96445386 96445487 -185748177 + LTR67 LTR ERVL 428 528 -29 21 0 0 0 chr1 96446311 96446332 -185747332 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 96446742 96446763 -185746901 + AT_rich Low_complexity Low_complexity 1 21 0 495 289 7 15 chr1 96447381 96447516 -185746148 + HERVL LTR ERVL 4161 4294 -1360 428 292 68 67 chr1 96449497 96449706 -185743958 + MIR3 SINE MIR 44 251 -9 299 293 146 8 chr1 96449752 96449875 -185743789 - L2 LINE L2 0 3313 3174 21 0 0 0 chr1 96451007 96451028 -185742636 + AT_rich Low_complexity Low_complexity 1 21 0 2331 116 0 0 chr1 96451173 96451484 -185742180 - AluSx SINE Alu -1 311 1 455 331 20 13 chr1 96452682 96452833 -185740831 + MIR3 SINE MIR 36 187 -21 28 0 0 0 chr1 96453463 96453491 -185740173 + AT_rich Low_complexity Low_complexity 1 28 0 2964 104 12 61 chr1 96453992 96454500 -185739164 + MER31A LTR ERV1 1 483 -2 222 37 0 0 chr1 96455269 96455296 -185738368 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1388 204 166 34 chr1 96455310 96455756 -185737908 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr1 96456240 96456277 -185737387 + (TTA)n Simple_repeat Simple_repeat 3 39 0 42732 34 22 1 chr1 96456277 96462281 -185731383 - L1PA3 LINE L1 -18 6137 6 219 308 149 0 chr1 96462997 96463104 -185730560 - L2 LINE L2 -214 3058 2936 309 300 8 58 chr1 96463104 96463224 -185730440 - L2 LINE L2 -612 2702 2589 10909 22 1 0 chr1 96463224 96464503 -185729161 - L1PA4 LINE L1 -954 5192 3913 7418 36 5 0 chr1 96464503 96465463 -185728201 + L1PA4 LINE L1 5189 6152 -3 276 148 0 0 chr1 96465607 96465668 -185727996 + (GA)n Simple_repeat Simple_repeat 2 62 0 322 336 85 31 chr1 96465669 96465892 -185727772 - L2 LINE L2 -832 2482 2248 291 326 0 0 chr1 96466339 96466431 -185727233 + L2 LINE L2 3156 3247 -25 2035 95 3 44 chr1 96466468 96466764 -185726900 - AluSc SINE Alu -25 284 1 1271 152 125 4 chr1 96466910 96467166 -185726498 + L1MB5 LINE L1 5801 6087 -87 991 223 69 42 chr1 96467166 96467655 -185726009 + MER39 LTR ERV1 1 541 -1 528 137 0 0 chr1 96467660 96467755 -185725909 + L1MB4 LINE L1 6086 6180 0 181 237 0 0 chr1 96469331 96469369 -185724295 - L2 LINE L2 -243 3070 3033 856 299 51 40 chr1 96469421 96469795 -185723869 - L2 LINE L2 -3 3310 2933 1888 150 4 0 chr1 96470254 96470571 -185723093 + AluJb SINE Alu 3 320 0 1504 134 70 46 chr1 96470776 96471060 -185722604 + AluJo SINE Alu 1 291 -21 377 237 54 0 chr1 96472946 96473039 -185720625 + FLAM_A SINE Alu 1 98 -35 27 0 0 0 chr1 96473217 96473244 -185720420 + AT_rich Low_complexity Low_complexity 1 27 0 190 178 111 0 chr1 96474228 96474273 -185719391 - MIR SINE MIR -90 172 123 238 250 0 0 chr1 96474446 96474498 -185719166 - MIR SINE MIR -128 134 83 195 129 0 0 chr1 96475448 96475479 -185718185 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 563 328 134 27 chr1 96475503 96476345 -185717319 + L1 LINE L1 2726 3693 -2453 318 348 14 5 chr1 96476441 96476651 -185717013 + L1 LINE L1 3729 3940 -2206 392 291 186 44 chr1 96476652 96477974 -185715690 + L1 LINE L1 3887 5395 -751 22 35 0 0 chr1 96478087 96478116 -185715548 + AT_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr1 96479252 96479309 -185714355 + AT_rich Low_complexity Low_complexity 1 57 0 186 103 0 0 chr1 96479380 96479409 -185714255 + (TATG)n Simple_repeat Simple_repeat 4 32 0 2167 130 0 0 chr1 96479637 96479944 -185713720 - AluSx SINE Alu -5 307 1 25 0 0 0 chr1 96480528 96480553 -185713111 + AT_rich Low_complexity Low_complexity 1 25 0 207 143 0 0 chr1 96481706 96481741 -185711923 + L2 LINE L2 3278 3312 -1 482 336 57 32 chr1 96481945 96482192 -185711472 + MIR SINE MIR 10 262 0 235 111 0 0 chr1 96482325 96482370 -185711294 + LTR66 LTR ERVL 394 438 -172 1061 269 61 76 chr1 96482637 96484149 -185709515 - L1ME LINE L1 -359 5811 4309 681 189 0 0 chr1 96484151 96484273 -185709391 - FLAM_A SINE Alu -10 132 11 323 257 92 48 chr1 96484281 96484296 -185709368 + L2 LINE L2 2193 2206 -1108 10986 202 26 10 chr1 96484296 96486040 -185707624 - L1PA15 LINE L1 -1 6164 4354 1924 104 4 0 chr1 96486040 96486299 -185707365 - AluSc SINE Alu -12 297 38 10986 202 26 10 chr1 96486299 96487841 -185705823 - L1PA15 LINE L1 -1811 4354 2837 323 257 92 48 chr1 96487841 96488031 -185705633 + L2 LINE L2 2206 2407 -907 273 98 0 0 chr1 96488793 96488834 -185704830 + (A)n Simple_repeat Simple_repeat 1 41 0 1136 345 68 12 chr1 96489267 96489924 -185703740 + L2 LINE L2 2407 3099 -214 372 88 0 0 chr1 96489951 96490008 -185703656 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 456 217 149 68 chr1 96490008 96490067 -185703597 + L2 LINE L2 3045 3098 -215 1391 184 40 20 chr1 96490067 96490366 -185703298 - AluJb SINE Alu -3 309 5 456 217 149 68 chr1 96490366 96490555 -185703109 + L2 LINE L2 3098 3313 0 441 337 109 4 chr1 96490567 96490834 -185702830 + Tigger8 DNA MER2_type 366 660 -6 675 170 0 18 chr1 96491181 96491293 -185702371 + FLAM_A SINE Alu 12 121 -21 3848 165 124 20 chr1 96491564 96491793 -185701871 - L1MB8 LINE L1 -47 6131 5927 2380 88 0 0 chr1 96491793 96492100 -185701564 + AluY SINE Alu 1 307 -4 3848 165 124 20 chr1 96492100 96493008 -185700656 - L1MB8 LINE L1 -251 5927 4870 789 367 27 31 chr1 96493094 96493650 -185700014 + L2 LINE L2 2761 3312 -1 4803 38 0 0 chr1 96494173 96494747 -185698917 - L1P LINE L1 -1517 4629 4056 6883 47 15 5 chr1 96494747 96495884 -185697780 + L1PA5 LINE L1 5004 6149 -5 1931 130 21 0 chr1 96497314 96497598 -185696066 + AluSx SINE Alu 1 290 -22 279 275 156 18 chr1 96497653 96497762 -185695902 + MIR SINE MIR 68 191 -71 2008 131 0 0 chr1 96497825 96498127 -185695537 + AluSx SINE Alu 1 302 0 2059 106 4 0 chr1 96499091 96499365 -185694299 - AluSx SINE Alu -25 287 13 24 53 0 0 chr1 96500405 96500443 -185693221 + AT_rich Low_complexity Low_complexity 1 38 0 29546 49 7 1 chr1 96500651 96505174 -185688490 + L1PA5 LINE L1 1608 6153 -1 2055 151 3 18 chr1 96506118 96506456 -185687208 + MER1B DNA MER1_type 7 339 0 459 0 0 0 chr1 96507050 96507101 -185686563 + (CA)n Simple_repeat Simple_repeat 2 52 0 194 413 13 20 chr1 96507311 96507461 -185686203 - L2 LINE L2 -449 2865 2717 373 331 81 33 chr1 96507605 96507937 -185685727 - L2 LINE L2 -796 2518 2171 23 0 0 0 chr1 96508372 96508395 -185685269 + AT_rich Low_complexity Low_complexity 1 23 0 2093 126 0 0 chr1 96508702 96508996 -185684668 - AluSq SINE Alu -19 294 1 237 271 68 0 chr1 96509081 96509140 -185684524 - L2 LINE L2 0 3272 3210 1286 151 18 0 chr1 96509249 96509468 -185684196 - L1MC2 LINE L1 -377 6385 6163 1749 191 54 3 chr1 96509468 96509804 -185683860 - MLT1A1 LTR MaLR 0 365 10 9367 198 74 61 chr1 96509824 96510580 -185683084 - L1MC2 LINE L1 -597 6165 5420 288 0 0 0 chr1 96510580 96510612 -185683052 + (TG)n Simple_repeat Simple_repeat 2 33 0 9367 198 74 61 chr1 96510612 96510823 -185682841 - L1MC2 LINE L1 -1342 5420 5213 1876 166 113 28 chr1 96510823 96511220 -185682444 - Tigger2a DNA MER2_type 0 434 4 9367 198 74 61 chr1 96511220 96512578 -185681086 - L1MC2 LINE L1 -1549 5213 3874 279 0 0 0 chr1 96512578 96512609 -185681055 + (CAAAT)n Simple_repeat Simple_repeat 4 34 0 9367 198 74 61 chr1 96512609 96512708 -185680956 - L1MC2 LINE L1 -2888 3874 3778 1946 90 0 30 chr1 96512708 96512974 -185680690 + AluSg SINE Alu 39 296 -14 9367 198 74 61 chr1 96512974 96513529 -185680135 - L1MC2 LINE L1 -2984 3778 3232 2269 41 48 3 chr1 96513529 96513824 -185679840 + AluY SINE Alu 1 308 -3 9367 198 74 61 chr1 96513824 96514561 -185679103 - L1MC2 LINE L1 -3530 3232 2506 1845 172 0 3 chr1 96514561 96514852 -185678812 - AluSx SINE Alu -20 292 3 9367 198 74 61 chr1 96514852 96515011 -185678653 - L1MC2 LINE L1 -4256 2506 2351 664 192 0 0 chr1 96515011 96515131 -185678533 - 5S rRNA rRNA 0 121 2 9367 198 74 61 chr1 96515131 96515482 -185678182 - L1MC2 LINE L1 -4411 2351 1880 2701 228 89 63 chr1 96515479 96516518 -185677146 - L1MC2 LINE L1 -4978 1067 1 * 1810 122 28 28 chr1 96516548 96516711 -185676953 - AluSx SINE Alu -26 286 121 189 0 0 0 chr1 96516711 96516732 -185676932 + (TA)n Simple_repeat Simple_repeat 2 22 0 1810 122 28 28 chr1 96516732 96516854 -185676810 - AluSx SINE Alu -190 122 1 2626 117 18 37 chr1 96516872 96517326 -185676338 - MER65A LTR ERV1 0 445 1 1223 152 73 5 chr1 96517401 96517605 -185676059 - AluSg/x SINE Alu -17 295 78 2261 90 0 0 chr1 96517706 96517994 -185675670 + AluY SINE Alu 11 298 -13 313 322 55 27 chr1 96518046 96518229 -185675435 - L1M4 LINE L1 -2291 3855 3668 21 0 0 0 chr1 96518416 96518437 -185675227 + AT_rich Low_complexity Low_complexity 1 21 0 244 217 22 0 chr1 96518665 96518711 -185674953 + MER91B DNA MER1_type 13 59 -131 849 215 77 19 chr1 96518773 96518982 -185674682 - MER58A DNA MER1_type 0 224 4 345 310 237 40 chr1 96519060 96519557 -185674107 + L2 LINE L2 2048 2642 -672 184 387 80 22 chr1 96519741 96519878 -185673786 - L2 LINE L2 -24 3248 3104 5102 155 34 1 chr1 96521061 96521939 -185671725 - L1MB3 LINE L1 -9 6174 5268 249 250 36 0 chr1 96522275 96522331 -185671333 - L2 LINE L2 -14 3299 3242 2227 86 0 44 chr1 96522361 96522676 -185670988 - AluY SINE Alu -10 301 1 410 255 0 11 chr1 96523396 96523490 -185670174 - MIR SINE MIR -116 146 54 1405 223 64 102 chr1 96523520 96524093 -185669571 + L1MEc LINE L1 1472 2065 -4150 229 224 0 0 chr1 96524093 96524142 -185669522 + MER58A DNA MER1_type 176 224 0 1405 223 64 102 chr1 96524142 96524806 -185668858 + L1MEc LINE L1 2065 2666 -3549 27 29 0 0 chr1 96525095 96525129 -185668535 + AT_rich Low_complexity Low_complexity 1 34 0 793 129 0 16 chr1 96525132 96525256 -185668408 - FLAM_C SINE Alu -11 122 1 264 259 136 0 chr1 96525828 96525909 -185667755 + MIR3 SINE MIR 93 184 -24 22 56 0 0 chr1 96526290 96526326 -185667338 + AT_rich Low_complexity Low_complexity 1 36 0 335 197 0 0 chr1 96527006 96527082 -185666582 + L1MA7 LINE L1 6204 6279 -12 2375 33 3 36 chr1 96527814 96528117 -185665547 - AluY SINE Alu -18 293 1 2119 80 17 0 chr1 96528454 96528741 -185664923 + L1PA11 LINE L1 5883 6174 0 854 307 117 3 chr1 96529951 96530319 -185663345 - L2 LINE L2 -2 3311 2902 272 238 16 0 chr1 96531136 96531199 -185662465 - MIR3 SINE MIR -50 158 95 4578 135 43 17 chr1 96531470 96531670 -185661994 + L1MA4A LINE L1 4549 4742 -1561 1772 188 3 0 chr1 96531670 96531973 -185661691 + AluJo SINE Alu 1 304 -8 4578 135 43 17 chr1 96531973 96532842 -185660822 + L1MA4A LINE L1 4742 5656 -647 2249 87 3 46 chr1 96532842 96533165 -185660499 + AluSq SINE Alu 3 311 -2 4578 135 43 17 chr1 96533165 96533439 -185660225 + L1MA4A LINE L1 5656 5921 -382 592 286 93 91 chr1 96533439 96533953 -185659711 + MER34 LTR ERV1 1 515 -27 2353 113 26 16 chr1 96533992 96534372 -185659292 + L1MA4A LINE L1 5918 6301 -2 21 0 0 0 chr1 96537338 96537359 -185656305 + AT_rich Low_complexity Low_complexity 1 21 0 500 292 103 21 chr1 96537740 96537973 -185655691 + MIR SINE MIR 11 262 0 189 0 0 0 chr1 96540553 96540574 -185653090 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 276 136 0 0 chr1 96540936 96540980 -185652684 - U5 snRNA snRNA -72 44 1 289 244 130 26 chr1 96542927 96543042 -185650622 - L2 LINE L2 0 3313 3187 668 312 80 23 chr1 96543168 96543517 -185650147 - L2 LINE L2 0 3313 2945 304 240 200 32 chr1 96543941 96544066 -185649598 - MIR SINE MIR -49 213 68 1377 137 41 48 chr1 96544079 96544371 -185649293 + MER33 DNA MER1_type 35 324 0 4527 131 26 6 chr1 96544496 96545177 -185648487 + ERVL-B3 LTR ERVL 4557 5251 -513 948 182 7 30 chr1 96545178 96545451 -185648213 - MLT1A2 LTR MaLR 0 374 4 2756 132 61 26 chr1 96545453 96545621 -185648043 + ERVL-B3 LTR ERVL 5247 5408 -356 360 0 0 0 chr1 96545621 96545661 -185648003 + (TG)n Simple_repeat Simple_repeat 1 40 0 2756 132 61 26 chr1 96545661 96545695 -185647969 + ERVL-B3 LTR ERVL 5408 5439 -325 2164 139 0 0 chr1 96545695 96546004 -185647660 - AluSx SINE Alu 0 312 4 2756 132 61 26 chr1 96546004 96546293 -185647371 + ERVL-B3 LTR ERVL 5439 5756 -8 1955 246 23 53 chr1 96546293 96546863 -185646801 + MLT2B3 LTR ERVL 1 553 -1 1784 125 0 19 chr1 96546972 96547236 -185646428 - AluSx SINE Alu -19 293 35 565 266 49 86 chr1 96547323 96547627 -185646037 + MER102b DNA MER1_type 39 331 -10 825 179 121 68 chr1 96547791 96547998 -185645666 + AluJo SINE Alu 86 303 -9 433 268 83 67 chr1 96548042 96548355 -185645309 + L1MC/D LINE L1 5476 5793 -2015 21 0 0 0 chr1 96548847 96548868 -185644796 + AT_rich Low_complexity Low_complexity 1 21 0 1910 98 3 61 chr1 96549002 96549320 -185644344 - AluSx SINE Alu 0 305 5 430 286 95 5 chr1 96549571 96549781 -185643883 - L1 LINE L1 -1140 5006 4778 487 270 7 7 chr1 96550001 96550153 -185643511 - MER104 DNA Tc2 0 180 29 857 281 14 5 chr1 96550370 96550587 -185643077 + MLT1I LTR MaLR 191 409 0 349 262 64 52 chr1 96550671 96550713 -185642951 + MLT1J1 LTR MaLR 255 295 -151 1923 134 13 26 chr1 96550713 96551026 -185642638 + AluJo SINE Alu 1 309 -3 349 262 64 52 chr1 96551026 96551192 -185642472 + MLT1J1 LTR MaLR 295 446 0 35481 74 56 6 chr1 96552305 96558156 -185635508 + L1PA6 LINE L1 11 6164 0 207 287 144 46 chr1 96558160 96558334 -185635330 - L2 LINE L2 -1254 2060 1870 42911 32 21 1 chr1 96558384 96564417 -185629247 + L1HS LINE L1 1 6155 0 1242 212 38 12 chr1 96565198 96565665 -185627999 - MLT1F LTR MaLR -4 538 1 778 247 72 0 chr1 96565972 96566166 -185627498 + MER58A DNA MER1_type 1 208 -16 21 36 0 0 chr1 96566484 96566512 -185627152 + AT_rich Low_complexity Low_complexity 1 28 0 239 175 35 18 chr1 96568064 96568121 -185625543 - MLT1L LTR MaLR 0 615 558 3880 119 7 0 chr1 96568224 96568835 -185624829 + HERVH48 LTR ERV1 578 1192 -5462 5097 124 1 0 chr1 96568842 96569569 -185624095 + HERVH48 LTR ERV1 1809 2536 -4118 11017 97 19 2 chr1 96569677 96571198 -185622466 + HERVH48 LTR ERV1 4627 6173 -481 10738 100 25 3 chr1 96571330 96572850 -185620814 + L1P LINE L1 1 1554 -4592 1526 193 21 3 chr1 96572962 96573293 -185620371 - L1 LINE L1 -3153 4412 4076 3418 213 12 36 chr1 96573294 96574638 -185619026 - L1 LINE L1 -3533 4032 2724 638 220 28 7 chr1 96574742 96574883 -185618781 + MER5A DNA MER1_type 23 166 -23 784 168 70 0 chr1 96575546 96575689 -185617975 - MER83C LTR ERV1 -7 366 214 2704 118 0 0 chr1 96575693 96576057 -185617607 - MER48 LTR ERV1 0 387 24 271 299 11 0 chr1 96576307 96576394 -185617270 + LTR16A LTR ERVL 165 252 -198 1059 266 61 43 chr1 96576408 96577025 -185616639 + MERVL LTR ERVL 400 1046 -3950 811 355 24 12 chr1 96577021 96577356 -185616308 + MERVL LTR ERVL 3124 3462 -2302 * 1409 326 58 51 chr1 96577443 96578865 -185614799 + MERVL LTR ERVL 3281 5067 -533 823 313 61 26 chr1 96579095 96579437 -185614227 + LTR16A LTR ERVL 92 445 -5 2894 3 0 0 chr1 96580505 96580816 -185612848 + AluY SINE Alu 1 311 0 317 333 128 19 chr1 96581771 96581927 -185611737 + MIR3 SINE MIR 30 202 -6 251 270 0 95 chr1 96582209 96582335 -185611329 + L2 LINE L2 3156 3269 -3 11544 151 23 15 chr1 96582945 96584908 -185608756 + Ricksha_c DNA DNA 9 1987 -59 3433 30 0 0 chr1 96584980 96585384 -185608280 - L1PA3 LINE L1 0 6155 5752 2438 80 0 6 chr1 96585388 96585701 -185607963 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 96585793 96585814 -185607850 + AT_rich Low_complexity Low_complexity 1 21 0 2856 188 19 21 chr1 96586286 96586849 -185606815 + MER68 LTR ERV1 1 562 0 198 286 86 0 chr1 96587392 96587462 -185606202 + MIR SINE MIR 180 255 -7 223 366 107 0 chr1 96587646 96587758 -185605906 - L2 LINE L2 -8 3264 3141 2855 7 0 0 chr1 96588625 96588934 -185604730 + AluY SINE Alu 1 309 -2 793 95 0 240 chr1 96589075 96589296 -185604368 + L1P LINE L1 3613 3780 -2366 199 306 0 0 chr1 96589458 96589507 -185604157 - MIR SINE MIR -213 49 1 283 280 30 40 chr1 96589556 96589656 -185604008 - L2 LINE L2 -5 3267 3169 241 239 318 0 chr1 96589888 96589976 -185603688 - L2 LINE L2 -6 3307 3192 223 259 49 62 chr1 96590003 96590084 -185603580 + L2 LINE L2 2563 2642 -672 195 349 61 57 chr1 96590261 96590490 -185603174 + L2 LINE L2 2831 3060 -212 191 293 49 37 chr1 96590584 96590666 -185602998 + L2 LINE L2 3229 3311 -2 208 331 40 48 chr1 96591300 96591424 -185602240 + L2 LINE L2 2857 2979 -293 1089 191 42 5 chr1 96592997 96593212 -185600452 + MER58A DNA MER1_type 1 223 -1 611 270 86 19 chr1 96594783 96595017 -185598647 + MIR SINE MIR 19 262 0 3092 169 46 33 chr1 96595373 96596068 -185597596 + LTR1 LTR ERV1 18 785 0 500 302 29 11 chr1 96596437 96596621 -185597043 + MIR SINE MIR 12 198 -64 3018 66 64 0 chr1 96597332 96597740 -185595924 + L1PA8 LINE L1 5726 6159 -13 26 0 0 0 chr1 96597740 96597766 -185595898 + AT_rich Low_complexity Low_complexity 1 26 0 459 341 134 25 chr1 96597969 96598365 -185595299 + L2 LINE L2 2469 2907 -407 512 294 72 26 chr1 96598399 96598593 -185595071 - MIR SINE MIR -1 261 59 404 297 128 45 chr1 96598613 96598879 -185594785 + L2 LINE L2 2958 3245 -68 360 365 57 21 chr1 96598925 96599117 -185594547 - L3 LINE CR1 -125 1452 1254 225 286 130 0 chr1 96599702 96599779 -185593885 - L3 LINE CR1 -3 1574 1488 646 303 74 33 chr1 96599818 96600062 -185593602 + MIR SINE MIR 3 256 -6 284 262 16 0 chr1 96600064 96600125 -185593539 - L3 LINE CR1 -125 1452 1391 2052 131 0 3 chr1 96600981 96601294 -185592370 + AluSx SINE Alu 1 312 0 678 78 0 0 chr1 96601803 96601893 -185591771 + L1PA10 LINE L1 6071 6160 -8 1670 174 169 8 chr1 96601960 96602328 -185591336 - MSTA LTR MaLR -1 427 1 182 265 69 49 chr1 96602407 96602509 -185591155 - L2 LINE L2 -15 3298 3195 871 246 10 65 chr1 96602619 96602912 -185590752 + MER46C DNA MER2_type 1 277 -61 1227 192 79 7 chr1 96603213 96603505 -185590159 + MER33 DNA MER1_type 12 324 0 582 226 110 103 chr1 96604652 96604958 -185588706 + LTR37B LTR ERV1 9 320 -148 1424 154 0 17 chr1 96604958 96605198 -185588466 + MER46A DNA MER2_type 1 236 0 582 226 110 103 chr1 96605198 96605346 -185588318 + LTR37B LTR ERV1 320 466 -2 22 35 0 0 chr1 96605519 96605548 -185588116 + AT_rich Low_complexity Low_complexity 1 29 0 632 264 68 23 chr1 96605577 96605797 -185587867 - L2 LINE L2 -3 3310 3081 4030 264 204 33 chr1 96606064 96608007 -185585657 - L2 LINE L2 -281 3032 740 1296 101 10 62 chr1 96608007 96608197 -185585467 - MER1B DNA MER1_type -2427 285 145 3129 79 33 7 chr1 96608197 96608627 -185585037 + MLT2A1 LTR ERVL 4 444 0 1296 101 10 62 chr1 96608627 96608644 -185585020 - MER1B DNA MER1_type -2567 145 129 2460 93 3 0 chr1 96609686 96609997 -185583667 + AluSx SINE Alu 1 312 0 1727 163 14 0 chr1 96611293 96611570 -185582094 + AluJo SINE Alu 1 281 -31 280 283 220 6 chr1 96613232 96613409 -185580255 + MLT1K LTR MaLR 374 588 0 228 324 42 99 chr1 96613569 96613711 -185579953 - L2 LINE L2 -1 3271 3138 465 303 143 17 chr1 96614189 96614664 -185579000 + L1M4 LINE L1 2177 2711 -3435 388 301 20 30 chr1 96614695 96614898 -185578766 + L1ME3A LINE L1 5746 5946 -224 186 329 41 14 chr1 96615128 96615201 -185578463 + MIR SINE MIR 17 91 -171 3838 133 27 14 chr1 96615337 96615997 -185577667 + L1MA4 LINE L1 5340 6008 -292 * 16228 171 39 19 chr1 96615996 96620992 -185572672 + L1MB1 LINE L1 36 5162 -1700 2310 73 0 30 chr1 96620992 96621293 -185572371 + AluY SINE Alu 4 295 -16 16228 171 39 19 chr1 96621293 96622203 -185571461 + L1MB1 LINE L1 5162 6052 -810 2363 160 20 41 chr1 96622298 96622804 -185570860 + L1MB1 LINE L1 6380 6872 -12 190 277 50 109 chr1 96624716 96624918 -185568746 + L2 LINE L2 3124 3313 0 * 206 219 0 0 chr1 96624889 96624930 -185568734 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 409 320 78 35 chr1 96625083 96625314 -185568350 + L2 LINE L2 2295 2535 -779 406 355 82 53 chr1 96625338 96626033 -185567631 - L2 LINE L2 -2 3270 2559 425 144 44 0 chr1 96626236 96626326 -185567338 - MER53 DNA DNA 0 189 96 314 358 96 51 chr1 96626327 96626659 -185567005 + L2 LINE L2 2923 3269 -3 185 413 16 0 chr1 96626688 96626809 -185566855 + L2 LINE L2 2632 2754 -560 476 257 224 0 chr1 96626891 96627043 -185566621 + MIR SINE MIR 21 206 -56 994 229 103 42 chr1 96628284 96628711 -185564953 + LTR37B LTR ERV1 10 462 -6 446 346 111 57 chr1 96630023 96630448 -185563216 + L2 LINE L2 2814 3261 -11 195 42 0 0 chr1 96630481 96630505 -185563159 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1539 202 63 97 chr1 96630623 96630647 -185563017 + L1MC5 LINE L1 6788 6811 -1150 2212 142 21 6 chr1 96630647 96630979 -185562685 - MER1B DNA MER1_type 0 337 1 1539 202 63 97 chr1 96630979 96631705 -185561959 + L1MC5 LINE L1 6811 7512 -449 332 346 59 7 chr1 96631995 96632131 -185561533 + HAL1 LINE L1 1 143 -2364 212 109 109 0 chr1 96632216 96632271 -185561393 + (TTTA)n Simple_repeat Simple_repeat 4 64 0 3039 29 0 29 chr1 96632271 96632654 -185561010 - L1PA4 LINE L1 0 6155 5784 25 0 0 0 chr1 96633074 96633099 -185560565 + AT_rich Low_complexity Low_complexity 1 25 0 472 208 2 58 chr1 96633746 96633913 -185559751 + L1ME1 LINE L1 5831 5998 -166 644 198 19 12 chr1 96633944 96634106 -185559558 + L1MA10 LINE L1 6170 6332 -2 1259 236 50 50 chr1 96634967 96635348 -185558316 - L2 LINE L2 -5 3308 2928 244 214 0 43 chr1 96635550 96635620 -185558044 + GA-rich Low_complexity Low_complexity 4 70 0 305 241 21 128 chr1 96636931 96637118 -185556546 + MIR SINE MIR 79 245 -17 939 149 41 10 chr1 96637222 96637417 -185556247 + L1MC2 LINE L1 6136 6336 -8 351 242 12 4 chr1 96637586 96637740 -185555924 - MER20 DNA MER1_type 0 219 2 295 271 46 110 chr1 96637756 96638037 -185555627 + L2 LINE L2 2468 2730 -584 335 333 8 107 chr1 96638072 96638306 -185555358 - L1ME LINE L1 -5532 538 328 482 0 17 0 chr1 96638309 96638367 -185555297 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 283 344 25 0 chr1 96638393 96638556 -185555108 - L1ME LINE L1 -5902 168 2 323 246 0 0 chr1 96638559 96638620 -185555044 - MER5B DNA MER1_type -116 62 2 350 231 15 0 chr1 96638693 96638758 -185554906 + L2 LINE L2 3214 3279 -34 2046 126 0 54 chr1 96639307 96639624 -185554040 + AluSx SINE Alu 1 300 -12 1709 217 68 14 chr1 96640348 96640791 -185552873 - MLT1C LTR MaLR 0 467 1 439 185 0 83 chr1 96641628 96641736 -185551928 + Tigger1 DNA MER2_type 2 100 -2318 187 325 72 0 chr1 96642987 96643070 -185550594 - L2 LINE L2 -32 3240 3152 200 280 56 75 chr1 96643387 96643494 -185550170 - MIR SINE MIR -65 143 39 387 281 10 0 chr1 96643728 96643824 -185549840 + MIR SINE MIR 72 168 -94 459 53 0 189 chr1 96643961 96644056 -185549608 + MADE1 DNA Mariner 1 77 -3 1153 233 47 20 chr1 96646204 96646612 -185547052 - L1M4 LINE L1 -2068 4078 3660 1494 219 52 14 chr1 96646658 96647024 -185546640 + MLT1E LTR MaLR 214 593 0 1394 237 21 51 chr1 96647029 96647266 -185546398 - L1MC4a LINE L1 -950 6858 6638 456 51 0 0 chr1 96647266 96647325 -185546339 + (TG)n Simple_repeat Simple_repeat 2 60 0 1394 237 21 51 chr1 96647325 96647518 -185546146 - L1MC4a LINE L1 -1170 6638 6441 341 267 95 71 chr1 96648030 96648240 -185545424 - L1ME LINE L1 -5854 216 2 518 305 84 9 chr1 96648264 96648477 -185545187 - MIR SINE MIR -6 256 28 21 0 0 0 chr1 96648714 96648735 -185544929 + AT_rich Low_complexity Low_complexity 1 21 0 1220 98 6 6 chr1 96650298 96650472 -185543192 - L1PB2 LINE L1 -2 6149 5976 6368 63 37 51 chr1 96650599 96652561 -185541103 - SVA Other Other -518 1386 101 490 28 14 0 chr1 96653395 96653467 -185540197 + L1PB2 LINE L1 6077 6149 -2 189 184 26 0 chr1 96654460 96654498 -185539166 - L2 LINE L2 0 3313 3275 359 295 79 14 chr1 96654583 96654722 -185538942 + L1ME4a LINE L1 5817 5964 -157 21 36 0 0 chr1 96654932 96654960 -185538704 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr1 96655135 96655167 -185538497 + (T)n Simple_repeat Simple_repeat 1 32 0 2264 62 0 4 chr1 96655169 96655443 -185538221 - AluY SINE Alu -2 309 37 531 15 0 0 chr1 96655448 96655516 -185538148 + L1PA3 LINE L1 6086 6153 -2 524 233 16 23 chr1 96655589 96655718 -185537946 - L2 LINE L2 -1 3312 3185 308 285 86 103 chr1 96655779 96656197 -185537467 - L2 LINE L2 -35 3237 2827 560 262 24 40 chr1 96656243 96656426 -185537238 + MIR SINE MIR 40 219 -43 289 93 23 0 chr1 96656439 96656482 -185537182 - MSTB2 LTR MaLR -5 452 409 741 173 8 8 chr1 96656482 96656615 -185537049 - Tigger2 DNA MER2_type -10 2708 2576 2507 128 58 0 chr1 96656622 96657020 -185536644 + MER1A DNA MER1_type 109 529 0 23 33 0 0 chr1 96657190 96657220 -185536444 + AT_rich Low_complexity Low_complexity 1 30 0 219 308 67 33 chr1 96657296 96657416 -185536248 + MIR3 SINE MIR 85 208 0 914 149 6 29 chr1 96657621 96657795 -185535869 - L1PA11 LINE L1 0 6174 6005 372 352 47 13 chr1 96658719 96658952 -185534712 - L2 LINE L2 -223 3049 2809 239 79 26 0 chr1 96659333 96659371 -185534293 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 342 0 0 0 chr1 96659485 96659523 -185534141 + (TG)n Simple_repeat Simple_repeat 2 39 0 364 294 156 24 chr1 96659779 96659990 -185533674 + MIR SINE MIR 24 262 0 284 300 33 0 chr1 96660029 96660119 -185533545 - L3b LINE CR1 -352 1231 1139 519 188 14 7 chr1 96662759 96662897 -185530767 + (TG)n Simple_repeat Simple_repeat 2 140 0 1367 169 31 4 chr1 96662914 96663169 -185530495 - MLT2C1 LTR ERVL -123 274 13 209 345 0 69 chr1 96663212 96663328 -185530336 + L2 LINE L2 2914 3021 -251 1070 336 105 25 chr1 96663342 96664073 -185529591 - L2 LINE L2 -741 2573 1784 394 190 162 28 chr1 96664773 96664915 -185528749 - LTR41 LTR ERVL -612 161 1 249 358 48 24 chr1 96664973 96665138 -185528526 - L2 LINE L2 -2047 1267 1099 248 360 37 48 chr1 96665140 96665412 -185528252 - L2 LINE L2 -2657 657 389 387 214 28 138 chr1 96667013 96667158 -185526506 - MER63 DNA MER1_type -81 755 1 2415 50 0 83 chr1 96667246 96667583 -185526081 - AluY SINE Alu -2 309 1 2197 104 0 0 chr1 96668016 96668303 -185525361 + AluSx SINE Alu 1 287 -25 31 26 0 0 chr1 96669652 96669690 -185523974 + AT_rich Low_complexity Low_complexity 1 38 0 203 349 139 19 chr1 96672604 96672813 -185520851 - MIR SINE MIR -11 251 18 1198 188 0 0 chr1 96673494 96673701 -185519963 - MER58A DNA MER1_type -17 207 1 713 194 103 29 chr1 96673709 96673884 -185519780 + MER5A DNA MER1_type 2 189 0 441 313 124 15 chr1 96673898 96674099 -185519565 - MIR SINE MIR -10 252 30 254 288 0 15 chr1 96674127 96674193 -185519471 - MIR3 SINE MIR -36 172 108 261 329 79 18 chr1 96674552 96674716 -185518948 - MIR SINE MIR -11 251 78 1505 212 28 53 chr1 96675465 96675937 -185517727 - MLT1C LTR MaLR 0 467 8 479 290 7 29 chr1 96676236 96676374 -185517290 - MIR SINE MIR -74 188 54 218 267 0 17 chr1 96676787 96676847 -185516817 + GA-rich Low_complexity Low_complexity 2 60 0 211 297 76 42 chr1 96677693 96677811 -185515853 + L2 LINE L2 2340 2461 -853 526 212 26 20 chr1 96677826 96677977 -185515687 + L1ME2 LINE L1 778 929 -6209 534 261 39 60 chr1 96678432 96678614 -185515050 + L1ME2 LINE L1 1378 1562 -5387 2183 138 0 0 chr1 96678614 96678910 -185514754 - AluSx SINE Alu -16 296 1 534 261 39 60 chr1 96678910 96679140 -185514524 + L1ME2 LINE L1 1562 1874 -5075 523 246 164 77 chr1 96679171 96680182 -185513482 + L1ME2 LINE L1 1823 2968 -4170 1456 212 40 40 chr1 96680192 96680485 -185513179 + L1ME2 LINE L1 6504 6799 -176 195 42 0 0 chr1 96680485 96680509 -185513155 + (TG)n Simple_repeat Simple_repeat 2 25 0 1456 212 40 40 chr1 96680509 96680640 -185513024 + L1ME2 LINE L1 6798 6928 -47 229 301 82 0 chr1 96681956 96682029 -185511635 + L2 LINE L2 3168 3246 -26 442 256 83 44 chr1 96682263 96682443 -185511221 + MIR3 SINE MIR 20 206 -2 430 182 371 0 chr1 96682805 96682937 -185510727 - MIR SINE MIR -28 234 54 350 291 79 53 chr1 96683922 96684111 -185509553 - L3 LINE CR1 -51 1526 1333 310 358 202 13 chr1 96684122 96684747 -185508917 + L2 LINE L2 2067 2809 -505 3543 128 68 104 chr1 96684768 96684898 -185508766 + L1MB3 LINE L1 5263 5396 -787 1840 145 4 7 chr1 96684898 96685174 -185508490 + AluSx SINE Alu 1 275 -37 13109 34 2 0 chr1 96685175 96687526 -185506138 + L1PA4 LINE L1 3795 6155 0 3543 128 68 104 chr1 96687526 96688348 -185505316 + L1MB3 LINE L1 5395 6183 0 184 320 0 0 chr1 96688401 96688451 -185505213 + L2 LINE L2 2869 2918 -354 583 225 9 0 chr1 96688515 96688626 -185505038 + MER81 DNA DNA 1 112 -2 827 341 75 7 chr1 96688634 96689050 -185504614 - L3 LINE CR1 -861 716 273 199 270 180 0 chr1 96689876 96689976 -185503688 + MIR SINE MIR 44 161 -101 746 307 25 0 chr1 96690010 96690212 -185503452 - MIR SINE MIR -10 252 46 26 0 0 0 chr1 96690448 96690474 -185503190 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr1 96692818 96692855 -185500809 + AT_rich Low_complexity Low_complexity 1 37 0 3522 134 37 8 chr1 96693379 96693978 -185499686 + L1PA15 LINE L1 5550 6165 0 1650 116 64 61 chr1 96694892 96695203 -185498461 + AluJb SINE Alu 1 312 0 186 229 0 0 chr1 96695645 96695680 -185497984 + MIR SINE MIR 210 244 -18 499 298 30 8 chr1 96695948 96696079 -185497585 + MER5A DNA MER1_type 56 189 0 629 322 43 4 chr1 96696086 96696316 -185497348 + MIR SINE MIR 20 258 -4 1982 108 42 52 chr1 96697302 96697609 -185496055 - AluSp SINE Alu -9 304 1 440 219 101 56 chr1 96698344 96698650 -185495014 - L1ME4a LINE L1 -4 6117 5798 415 278 105 51 chr1 96698685 96699006 -185494658 - L1ME4a LINE L1 -407 5714 5337 2196 105 0 14 chr1 96699056 96699352 -185494312 + AluSg SINE Alu 1 292 -18 40549 54 3 1 chr1 96699355 96705484 -185488180 + L1PA5 LINE L1 2 6145 -9 487 226 19 9 chr1 96705582 96705688 -185487976 + MER81 DNA DNA 6 112 -2 991 246 88 26 chr1 96705695 96706114 -185487550 + L1MC4 LINE L1 7597 8041 -1 257 356 48 7 chr1 96706276 96706422 -185487242 + L2 LINE L2 3121 3272 0 312 48 0 0 chr1 96706709 96706751 -185486913 + (GA)n Simple_repeat Simple_repeat 1 42 0 238 297 137 36 chr1 96706756 96706813 -185486851 + MIR SINE MIR 18 68 -194 2112 134 0 25 chr1 96706813 96707133 -185486531 + AluSx SINE Alu 1 312 0 238 297 137 36 chr1 96707133 96707294 -185486370 + MIR SINE MIR 68 258 -4 297 361 96 8 chr1 96707338 96707598 -185486066 + L2 LINE L2 2062 2344 -970 403 271 9 19 chr1 96707918 96708025 -185485639 + L2 LINE L2 3189 3294 -19 1882 190 30 89 chr1 96708775 96709269 -185484395 + L1MC4a LINE L1 7218 7669 -139 2264 110 13 0 chr1 96709269 96709577 -185484087 - AluSx SINE Alu 0 312 1 1882 190 30 89 chr1 96709577 96709708 -185483956 + L1MC4a LINE L1 7669 7806 -2 269 261 109 43 chr1 96709951 96710043 -185483621 - L2 LINE L2 -37 3276 3179 290 26 26 0 chr1 96710052 96710091 -185483573 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 538 330 93 40 chr1 96714430 96714885 -185478779 - L2 LINE L2 -4 3268 2791 197 226 16 48 chr1 96715022 96715084 -185478580 - L2 LINE L2 0 3313 3254 2057 130 49 3 chr1 96715259 96715604 -185478060 - MER46B DNA MER2_type 0 236 1 194 268 0 31 chr1 96716718 96716815 -185476849 + (TA)n Simple_repeat Simple_repeat 1 94 0 440 203 101 72 chr1 96718513 96718651 -185475013 + MER5B DNA MER1_type 4 145 -33 2242 98 3 46 chr1 96718651 96718797 -185474867 + AluSq SINE Alu 1 152 -161 6047 23 0 0 chr1 96718797 96719494 -185474170 + L1PA3 LINE L1 5456 6152 -3 2242 98 3 46 chr1 96719494 96719674 -185473990 + AluSq SINE Alu 152 313 0 264 86 0 0 chr1 96719675 96719710 -185473954 + MER5B DNA MER1_type 131 165 -13 957 183 44 0 chr1 96719771 96719951 -185473713 + MER5A DNA MER1_type 2 189 0 358 265 142 31 chr1 96720113 96720275 -185473389 + MER5A DNA MER1_type 7 186 -3 744 235 183 0 chr1 96721321 96721534 -185472130 - MIR SINE MIR -1 261 10 346 325 95 20 chr1 96722961 96723161 -185470503 - MIR SINE MIR -19 243 29 269 306 182 0 chr1 96723226 96723347 -185470317 - MIR SINE MIR -13 249 107 21 57 0 0 chr1 96723521 96723556 -185470108 + AT_rich Low_complexity Low_complexity 1 35 0 1910 257 144 50 chr1 96724039 96725293 -185468371 - HAL1 LINE L1 -9 2498 1362 2583 61 0 0 chr1 96725293 96725604 -185468060 - AluY SINE Alu 0 311 1 1910 257 144 50 chr1 96725604 96725848 -185467816 - HAL1 LINE L1 -1145 1362 1142 1901 146 20 10 chr1 96725848 96726143 -185467521 + AluSx SINE Alu 1 298 -14 1910 257 144 50 chr1 96726143 96726253 -185467411 - HAL1 LINE L1 -1365 1142 721 240 319 0 0 chr1 96726274 96726343 -185467321 - HAL1 LINE L1 -1843 664 596 468 231 98 122 chr1 96726505 96726842 -185466822 - HAL1 LINE L1 -2140 367 39 815 285 40 12 chr1 96727517 96727766 -185465898 + MIR SINE MIR 2 257 -5 310 255 20 20 chr1 96728596 96728698 -185464966 + CT-rich Low_complexity Low_complexity 2 103 0 212 232 71 18 chr1 96728898 96728954 -185464710 - L2 LINE L2 -236 3036 2978 2156 113 72 20 chr1 96729107 96729453 -185464211 - THE1B LTR MaLR 0 364 1 522 185 17 73 chr1 96729494 96729656 -185464008 - MER77 LTR ERV1 -7 598 472 607 330 147 4 chr1 96729717 96729975 -185463689 - L2 LINE L2 -343 2971 2677 277 272 202 47 chr1 96729993 96730206 -185463458 - L2 LINE L2 -923 2391 2146 796 284 24 0 chr1 96730332 96730540 -185463124 + MIR SINE MIR 41 253 -9 543 246 8 30 chr1 96731154 96731288 -185462376 + MIR SINE MIR 14 144 -118 26233 42 6 1 chr1 96732407 96736483 -185457181 + L1PA4 LINE L1 2061 6155 0 566 322 59 28 chr1 96736476 96736936 -185456728 + HAL1b LINE L1 169 642 -706 * 319 253 113 54 chr1 96736984 96737170 -185456494 + HAL1b LINE L1 737 933 -415 620 288 120 38 chr1 96737496 96738725 -185454939 + L1M4 LINE L1 2148 3476 -2670 232 311 56 25 chr1 96738893 96739054 -185454610 + L1M4 LINE L1 3670 3835 -2311 201 313 209 17 chr1 96740387 96740502 -185453162 - L2 LINE L2 0 3272 3136 1542 199 46 0 chr1 96741089 96741371 -185452293 + AluJo SINE Alu 4 298 -14 24 96 0 0 chr1 96743845 96743918 -185449746 + AT_rich Low_complexity Low_complexity 1 73 0 188 268 0 0 chr1 96744288 96744329 -185449335 - L2 LINE L2 -8 3264 3224 669 288 90 0 chr1 96744655 96744867 -185448797 - MIR SINE MIR -1 261 31 412 313 138 61 chr1 96745070 96745779 -185447885 - L2 LINE L2 -731 2583 1820 412 213 88 29 chr1 96745800 96745936 -185447728 - HAL1b LINE L1 -873 475 332 7286 45 1 0 chr1 96746546 96747997 -185445667 - L1PA6 LINE L1 -4 6150 4698 297 318 119 52 chr1 96748771 96749262 -185444402 + L2 LINE L2 2690 3214 -99 2317 91 0 7 chr1 96749483 96749779 -185443885 + AluSg SINE Alu 1 294 -16 697 339 21 9 chr1 96749788 96750021 -185443643 - MIR SINE MIR -7 255 20 1645 172 89 15 chr1 96750323 96750661 -185443003 - MLT1A1 LTR MaLR -2 363 1 198 103 0 0 chr1 96751674 96751703 -185441961 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1884 155 3 16 chr1 96753978 96754294 -185439370 - AluJo SINE Alu 0 312 1 418 234 78 16 chr1 96754562 96754690 -185438974 + MIR SINE MIR 114 249 -13 182 326 44 59 chr1 96755028 96755163 -185438501 - L2 LINE L2 -250 3022 2890 6192 143 121 102 chr1 96755794 96757462 -185436202 - pTR5 LTR ERV1 0 2438 741 37 0 0 0 chr1 96757641 96757678 -185435986 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 96757687 96757711 -185435953 + AT_rich Low_complexity Low_complexity 1 24 0 1618 166 124 27 chr1 96757731 96758062 -185435602 - MLT1A1 LTR MaLR -2 363 1 539 310 47 24 chr1 96758225 96758438 -185435226 + MIR SINE MIR 5 222 -40 458 105 53 13 chr1 96758859 96758935 -185434729 - MADE1 DNA Mariner -1 79 1 2005 107 0 75 chr1 96759026 96759345 -185434319 - AluSp SINE Alu -18 295 1 285 88 147 59 chr1 96759584 96759652 -185434012 + L1MA4 LINE L1 6198 6271 -29 27 0 0 0 chr1 96759654 96759681 -185433983 + AT_rich Low_complexity Low_complexity 1 27 0 2078 37 4 4 chr1 96760045 96760337 -185433327 + AluY SINE Alu 35 326 0 235 269 84 42 chr1 96760520 96760639 -185433025 - MIR SINE MIR -74 188 65 28 29 0 0 chr1 96761512 96761547 -185432117 + AT_rich Low_complexity Low_complexity 1 35 0 14598 196 29 18 chr1 96761790 96766601 -185427063 + L1PA13 LINE L1 1 4944 -1853 1896 232 99 85 chr1 96766658 96767387 -185426277 - MER21B LTR ERV1 -124 739 1 491 185 46 92 chr1 96767387 96767582 -185426082 + L1MC5 LINE L1 7006 7191 -770 1265 14 0 0 chr1 96767715 96767862 -185425802 - L1P2 LINE L1 -364 5791 5645 339 0 0 0 chr1 96767862 96767904 -185425760 + L1PA3 LINE L1 6111 6152 -3 1124 260 66 38 chr1 96767913 96768279 -185425385 - L2 LINE L2 -528 2786 2411 1548 224 154 4 chr1 96768373 96768887 -185424777 - L1ME LINE L1 -2920 3160 2570 303 291 102 24 chr1 96768935 96769062 -185424602 - L1ME LINE L1 -5404 666 530 259 278 87 48 chr1 96769368 96769494 -185424170 - L1ME LINE L1 -5611 459 329 210 218 36 0 chr1 96769494 96769549 -185424115 + CT-rich Low_complexity Low_complexity 5 61 0 497 319 54 24 chr1 96769549 96769881 -185423783 - L1ME LINE L1 -5703 367 26 1160 292 142 105 chr1 96769905 96771414 -185422250 - L2 LINE L2 -951 2363 799 21 57 0 0 chr1 96772088 96772123 -185421541 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 96772770 96772801 -185420863 + AT_rich Low_complexity Low_complexity 1 31 0 268 304 39 29 chr1 96772856 96772958 -185420706 + MIR3 SINE MIR 67 169 -39 6134 79 5 0 chr1 96773165 96774297 -185419367 - L1PA13 LINE L1 -18 6145 4996 1103 146 0 16 chr1 96774297 96774484 -185419180 + L1PA13 LINE L1 4789 4972 -1174 226 135 19 0 chr1 96774997 96775049 -185418615 - L1ME4a LINE L1 -2 6119 6067 236 364 63 21 chr1 96775960 96776103 -185417561 - MIR3 SINE MIR -58 150 2 272 159 0 0 chr1 96776510 96776554 -185417110 - L1MA4 LINE L1 -5 6295 6252 186 103 0 0 chr1 96777463 96777492 -185416172 + (CAT)n Simple_repeat Simple_repeat 1 29 0 226 315 153 0 chr1 96777493 96777604 -185416060 - MIR SINE MIR -62 146 19 2064 104 3 23 chr1 96777947 96778254 -185415410 - AluSq SINE Alu -12 301 1 234 174 0 0 chr1 96778635 96778681 -185414983 + T-rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 96779240 96779263 -185414401 + AT_rich Low_complexity Low_complexity 1 23 0 512 277 74 20 chr1 96779529 96779731 -185413933 + MIR SINE MIR 39 251 -11 2985 151 19 0 chr1 96781043 96781508 -185412156 - L1M2c LINE L1 -5076 1713 1240 24 32 0 0 chr1 96782364 96782395 -185411269 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr1 96783472 96783507 -185410157 + AT_rich Low_complexity Low_complexity 1 35 0 187 225 211 28 chr1 96783929 96784000 -185409664 + L2 LINE L2 3229 3312 -1 221 127 0 70 chr1 96784376 96784447 -185409217 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr1 96784466 96784487 -185409177 + AT_rich Low_complexity Low_complexity 1 21 0 2409 52 0 3 chr1 96784487 96784776 -185408888 - AluY SINE Alu -23 288 1 1328 160 22 4 chr1 96784796 96785027 -185408637 + MER46A DNA MER2_type 1 235 -1 252 139 66 8 chr1 96785069 96785191 -185408473 + (TA)n Simple_repeat Simple_repeat 2 130 0 270 356 103 27 chr1 96785313 96785610 -185408054 - L2 LINE L2 -235 3037 2720 4792 189 88 8 chr1 96785918 96786914 -185406750 + Tigger6a DNA MER2_type 1 1076 -7 9400 141 25 8 chr1 96787208 96789797 -185403867 - L1MA2 LINE L1 0 7723 5103 17124 95 28 12 chr1 96789799 96795971 -185397693 - L1PA7 LINE L1 -3 6466 113 19360 154 70 11 chr1 96795972 96799722 -185393942 - L1MA2 LINE L1 -3580 3985 12 21 36 0 0 chr1 96800121 96800149 -185393515 + AT_rich Low_complexity Low_complexity 1 28 0 249 108 0 0 chr1 96800271 96800308 -185393356 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 192 404 18 9 chr1 96800416 96800525 -185393139 + L2 LINE L2 2559 2668 -646 2320 92 3 7 chr1 96800630 96800936 -185392728 - AluSx SINE Alu -7 305 1 204 320 278 0 chr1 96801047 96801144 -185392520 - MIR3 SINE MIR -39 169 46 2419 55 0 19 chr1 96801248 96801560 -185392104 + AluY SINE Alu 1 306 -5 610 142 75 0 chr1 96802018 96802124 -185391540 - FLAM_A SINE Alu -8 134 21 49 76 0 0 chr1 96803815 96803920 -185389744 + AT_rich Low_complexity Low_complexity 1 105 0 244 329 0 0 chr1 96804312 96804385 -185389279 - Charlie4 DNA MER1_type -1 1960 1888 249 83 0 0 chr1 96804397 96804433 -185389231 + (CA)n Simple_repeat Simple_repeat 1 36 0 785 294 23 5 chr1 96806652 96806873 -185386791 + MIR SINE MIR 28 252 -10 28 29 0 0 chr1 96806878 96806913 -185386751 + AT_rich Low_complexity Low_complexity 1 35 0 180 167 271 0 chr1 96807104 96807152 -185386512 + MIR SINE MIR 196 256 -6 212 191 21 0 chr1 96807535 96807582 -185386082 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr1 96807590 96807618 -185386046 + AT_rich Low_complexity Low_complexity 1 28 0 1304 165 143 30 chr1 96807752 96808080 -185385584 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr1 96809385 96809414 -185384250 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 96809449 96809477 -185384187 + AT_rich Low_complexity Low_complexity 1 28 0 188 316 0 40 chr1 96810046 96810122 -185383542 + L2 LINE L2 3187 3259 -13 2201 179 52 5 chr1 96810378 96810785 -185382879 - MSTB LTR MaLR 0 426 1 29 47 0 0 chr1 96810796 96810839 -185382825 + AT_rich Low_complexity Low_complexity 1 43 0 2234 114 0 0 chr1 96810909 96811217 -185382447 - AluSg SINE Alu -2 308 1 301 297 77 38 chr1 96811307 96811514 -185382150 - MIR SINE MIR -46 216 3 404 259 103 63 chr1 96811621 96811658 -185382006 + MIR SINE MIR 12 46 -216 2243 99 10 0 chr1 96811658 96811950 -185381714 - AluSg SINE Alu -15 295 1 404 259 103 63 chr1 96811950 96812086 -185381578 + MIR SINE MIR 46 192 -70 5594 135 19 18 chr1 96812494 96813810 -185379854 - L1PA16 LINE L1 -18 6148 4828 2642 132 34 13 chr1 96815037 96815514 -185378150 - L1MB3 LINE L1 -15 6168 5682 219 324 98 44 chr1 96815830 96816034 -185377630 + L2 LINE L2 2258 2472 -842 206 406 98 7 chr1 96816481 96816624 -185377040 + L2 LINE L2 3115 3270 -2 202 379 33 33 chr1 96816648 96816862 -185376802 + L2 LINE L2 2608 2821 -493 21 36 0 0 chr1 96817407 96817435 -185376229 + AT_rich Low_complexity Low_complexity 1 28 0 2999 300 77 29 chr1 96817727 96819001 -185374663 - Charlie8 DNA MER1_type -2 2415 1065 2437 68 0 0 chr1 96819001 96819296 -185374368 + AluY SINE Alu 1 295 -16 2999 300 77 29 chr1 96819296 96819433 -185374231 - Charlie8 DNA MER1_type -1352 1065 936 263 254 14 14 chr1 96819544 96819615 -185374049 + (TA)n Simple_repeat Simple_repeat 1 71 0 311 188 14 14 chr1 96819947 96820016 -185373648 - MLT1L LTR MaLR -1 614 546 280 298 8 0 chr1 96820065 96820186 -185373478 + (TA)n Simple_repeat Simple_repeat 1 122 0 558 294 25 29 chr1 96820186 96820390 -185373274 - MIR SINE MIR -58 204 2 310 250 38 0 chr1 96821445 96821525 -185372139 - MIR3 SINE MIR -17 191 109 349 327 33 40 chr1 96821722 96821872 -185371792 - MIR SINE MIR -95 167 19 2259 113 0 0 chr1 96822501 96822811 -185370853 + AluSx SINE Alu 1 310 -2 2376 97 0 0 chr1 96823965 96824273 -185369391 + AluSc SINE Alu 1 308 -1 25 65 0 0 chr1 96824388 96824434 -185369230 + AT_rich Low_complexity Low_complexity 1 46 0 304 115 16 0 chr1 96824434 96824495 -185369169 - L1MA2 LINE L1 0 6304 6243 24 53 0 0 chr1 96825238 96825276 -185368388 + AT_rich Low_complexity Low_complexity 1 38 0 1050 128 10 39 chr1 96827273 96827476 -185366188 + L1PA6 LINE L1 5958 6154 0 2561 217 69 156 chr1 96828578 96828749 -185364915 + Zaphod DNA AcHobo 1 185 -3846 2333 206 51 19 chr1 96828749 96829274 -185364390 - MLT1F LTR MaLR 0 542 1 2561 217 69 156 chr1 96829274 96831503 -185362161 + Zaphod DNA AcHobo 185 2193 -1838 636 205 0 8 chr1 96831503 96831625 -185362039 + FLAM_C SINE Alu 1 121 -22 268 248 129 40 chr1 96831626 96831828 -185361836 + Zaphod DNA AcHobo 2161 2380 -1651 1578 144 25 11 chr1 96832034 96832318 -185361346 - L1MB7 LINE L1 0 6184 5897 760 309 40 16 chr1 96833231 96833483 -185360181 + MIR SINE MIR 2 259 -3 21 0 0 0 chr1 96834985 96835006 -185358658 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr1 96836091 96836142 -185357522 + AT_rich Low_complexity Low_complexity 1 51 0 1765 243 109 2 chr1 96836266 96836826 -185356838 - L1MA8 LINE L1 -19 6272 5653 734 208 0 7 chr1 96836892 96837036 -185356628 + FLAM_C SINE Alu 1 143 0 207 92 0 138 chr1 96837640 96837705 -185355959 + (TTTTG)n Simple_repeat Simple_repeat 1 56 0 928 196 0 18 chr1 96838010 96838178 -185355486 + FRAM SINE Alu 1 165 -11 278 324 0 0 chr1 96838453 96838521 -185355143 - MIR SINE MIR -167 95 28 227 239 22 0 chr1 96838985 96839031 -185354633 + L2 LINE L2 3206 3252 -20 1951 143 32 22 chr1 96839122 96839493 -185354171 - THE1C LTR MaLR 0 375 1 10224 119 11 30 chr1 96839493 96841104 -185352560 - THE1C-int LTR MaLR 0 1580 1 1899 155 24 21 chr1 96841104 96841478 -185352186 - THE1C LTR MaLR 0 375 1 299 340 39 43 chr1 96841843 96842099 -185351565 - L2 LINE L2 -214 3058 2804 261 196 0 0 chr1 96844343 96844389 -185349275 + L2 LINE L2 3265 3310 -3 34 0 0 0 chr1 96844960 96844994 -185348670 + AT_rich Low_complexity Low_complexity 1 34 0 25 108 0 0 chr1 96846050 96846152 -185347512 + AT_rich Low_complexity Low_complexity 1 102 0 621 261 62 58 chr1 96846152 96846409 -185347255 - MIR SINE MIR -4 258 1 413 241 51 108 chr1 96847295 96847428 -185346236 + MIR3 SINE MIR 15 135 -73 2217 125 0 0 chr1 96847428 96847733 -185345931 + AluSg SINE Alu 1 305 -5 413 241 51 108 chr1 96847733 96847794 -185345870 + MIR3 SINE MIR 135 198 -10 1351 176 33 92 chr1 96848223 96848529 -185345135 - AluJo SINE Alu -24 288 1 192 300 11 33 chr1 96848811 96848901 -185344763 + L3b LINE CR1 1328 1415 -168 673 205 19 39 chr1 96849992 96850148 -185343516 - MIR SINE MIR -11 251 99 204 97 0 0 chr1 96851310 96851341 -185342323 + (CA)n Simple_repeat Simple_repeat 2 32 0 1288 161 125 54 chr1 96851639 96851919 -185341745 + AluJb SINE Alu 1 300 -2 200 316 52 104 chr1 96853095 96853402 -185340262 - L2 LINE L2 -836 2478 2188 609 217 66 24 chr1 96853458 96853670 -185339994 + L1M4 LINE L1 2789 3009 -3137 2210 131 0 0 chr1 96853942 96854254 -185339410 - AluSx SINE Alu 0 312 1 623 251 80 0 chr1 96854672 96854835 -185338829 + MIR SINE MIR 81 256 -6 189 0 0 0 chr1 96854836 96854857 -185338807 + (CCA)n Simple_repeat Simple_repeat 1 21 0 932 267 32 41 chr1 96854864 96855191 -185338473 - L2 LINE L2 -317 2955 2635 2296 104 0 0 chr1 96855193 96855502 -185338162 - AluY SINE Alu -2 309 1 184 265 0 20 chr1 96855606 96855655 -185338009 + MER5B DNA MER1_type 2 49 -129 36 0 0 0 chr1 96855655 96855691 -185337973 + AT_rich Low_complexity Low_complexity 1 36 0 767 196 0 8 chr1 96855691 96855824 -185337840 + FLAM_C SINE Alu 1 132 -11 193 300 0 0 chr1 96855830 96855880 -185337784 + MER5A DNA MER1_type 68 117 -72 221 305 49 12 chr1 96856160 96856242 -185337422 - L2 LINE L2 -2102 1212 1128 23 54 0 0 chr1 96856646 96856683 -185336981 + AT_rich Low_complexity Low_complexity 1 37 0 1851 229 56 42 chr1 96856716 96857305 -185336359 - L1MC4a LINE L1 -1671 6137 5541 656 266 31 26 chr1 96857316 96857849 -185335815 - L1MC4a LINE L1 -743 5403 4885 3014 155 64 28 chr1 96857890 96858471 -185335193 + MER7C DNA MER2_type 1 602 0 21 57 0 0 chr1 96858680 96858715 -185334949 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 96858922 96858959 -185334705 + AT_rich Low_complexity Low_complexity 1 37 0 946 221 62 19 chr1 96859366 96859624 -185334040 - L1MC/D LINE L1 -1999 5809 5541 1252 286 59 35 chr1 96859635 96860209 -185333455 - L1MC/D LINE L1 -743 5403 4844 3130 162 40 27 chr1 96860209 96860803 -185332861 + MER7C DNA MER2_type 1 602 0 1252 286 59 35 chr1 96860803 96861598 -185332066 - L1MC/D LINE L1 -1302 4844 4016 1349 179 20 8 chr1 96861630 96861876 -185331788 + AluJb SINE Alu 50 298 -14 285 259 67 30 chr1 96861962 96862097 -185331567 - L1MC/D LINE L1 -2229 3917 3778 * 5714 201 65 29 chr1 96862092 96862865 -185330799 - L1MC1 LINE L1 -121 6212 5468 216 0 0 0 chr1 96862865 96862889 -185330775 + (TGG)n Simple_repeat Simple_repeat 1 24 0 1513 183 7 11 chr1 96862889 96863187 -185330477 - AluJo SINE Alu 0 307 11 5714 201 65 29 chr1 96863187 96864473 -185329191 - L1MC1 LINE L1 -864 5469 4075 651 353 40 16 chr1 96864492 96864943 -185328721 - L1MC1 LINE L1 -3104 3042 2581 411 319 21 2 chr1 96864961 96865130 -185328534 - HERVL40 LTR ERVL -109 5324 4720 4942 336 43 25 chr1 96865169 96867921 -185325743 - HERVL40 LTR ERVL -638 5126 2324 187 345 118 0 chr1 96868042 96868152 -185325512 - L2 LINE L2 0 3272 3150 1381 198 116 101 chr1 96870288 96870445 -185323219 - HERVL40 LTR ERVL -5058 472 319 1334 186 50 40 chr1 96870445 96870785 -185322879 - AluJb SINE Alu 0 312 1 1381 198 116 101 chr1 96870785 96871092 -185322572 - HERVL40 LTR ERVL -5211 319 1 1235 258 26 73 chr1 96871097 96871563 -185322101 - LTR40b LTR ERVL -15 447 4 220 369 60 12 chr1 96871575 96871659 -185322005 - L2 LINE L2 -53 3219 3132 489 331 0 6 chr1 96871827 96871984 -185321680 - L2 LINE L2 -234 3038 2883 901 295 63 76 chr1 96871985 96872363 -185321301 - MLT1K LTR MaLR 0 588 217 2020 92 8 0 chr1 96872363 96872625 -185321039 - AluSc SINE Alu -45 264 1 901 295 63 76 chr1 96872625 96872771 -185320893 - MLT1K LTR MaLR -371 217 71 405 164 0 0 chr1 96873046 96873119 -185320545 + (TA)n Simple_repeat Simple_repeat 2 74 0 308 318 23 0 chr1 96873334 96873422 -185320242 + L2 LINE L2 3191 3280 -33 1563 101 156 4 chr1 96873454 96873734 -185319930 - AluSx SINE Alu 0 302 1 429 224 61 110 chr1 96874009 96874097 -185319567 - L1ME1 LINE L1 -5 6161 6070 1895 114 228 8 chr1 96874097 96874448 -185319216 - MSTA LTR MaLR 0 428 1 429 224 61 110 chr1 96874448 96874587 -185319077 - L1ME1 LINE L1 -96 6070 5945 691 209 0 8 chr1 96874743 96874872 -185318792 + FLAM_A SINE Alu 2 129 -4 309 244 23 12 chr1 96874884 96874970 -185318694 + 7SLRNA srpRNA srpRNA 224 310 -10 9243 135 63 50 chr1 96976216 96978042 -185215622 - HERVH LTR ERV1 -5863 1850 1 2820 83 134 2 chr1 96978044 96978440 -185215224 - LTR7 LTR ERV1 -2 448 1 375 284 94 16 chr1 96979138 96979265 -185214399 + MIR SINE MIR 68 204 -58 257 296 45 11 chr1 96979288 96979376 -185214288 + MIR SINE MIR 20 110 -152 294 257 28 22 chr1 96981385 96981490 -185212174 - MIR SINE MIR -37 171 62 248 213 88 25 chr1 96982247 96982327 -185211337 + LTR50 LTR ERVL 17 101 -694 864 336 61 10 chr1 96982504 96982915 -185210749 + ERVL LTR ERVL 4127 4558 -1206 878 189 0 13 chr1 96983045 96983198 -185210466 - Tigger3b DNA MER2_type 0 1231 1081 * 4669 145 48 22 chr1 96983191 96984060 -185209604 - Tigger3b DNA MER2_type -339 892 1 3787 274 45 26 chr1 96984063 96985571 -185208093 - ERVL LTR ERVL -429 5335 3767 2851 148 12 8 chr1 96985892 96986372 -185207292 + L1PA16 LINE L1 5685 6166 0 354 100 0 0 chr1 96986419 96986479 -185207185 + (GA)n Simple_repeat Simple_repeat 1 60 0 615 237 66 36 chr1 96986481 96986706 -185206958 + MLT1H1 LTR MaLR 299 570 -23 21 57 0 0 chr1 96987395 96987430 -185206234 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 96987461 96987498 -185206166 + AT_rich Low_complexity Low_complexity 1 37 0 303 241 52 12 chr1 96987995 96988114 -185205550 - L1ME LINE L1 -352 5817 5691 846 301 38 4 chr1 96989128 96989394 -185204270 - ERVL LTR ERVL -2315 3449 3175 384 245 66 19 chr1 96990118 96990224 -185203440 + L3 LINE CR1 1455 1565 -12 210 167 0 0 chr1 96990403 96990439 -185203225 + (TA)n Simple_repeat Simple_repeat 2 37 0 647 237 21 79 chr1 96991129 96991408 -185202256 - L1ME2 LINE L1 0 6959 6697 896 194 0 0 chr1 96991422 96991602 -185202062 + C-rich Low_complexity Low_complexity 1 180 0 227 350 0 0 chr1 96991602 96991662 -185202002 + polypyrimidine Low_complexity Low_complexity 1 60 0 264 122 0 0 chr1 96991763 96991804 -185201860 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 406 220 64 28 chr1 96991804 96991913 -185201751 - FLAM_A SINE Alu -29 113 1 2013 240 41 28 chr1 96991916 96992634 -185201030 - L1ME2 LINE L1 -256 6703 5979 1208 175 45 104 chr1 96992640 96992949 -185200715 + MLT2C1 LTR ERVL 2 292 -105 28 0 0 0 chr1 96992949 96992977 -185200687 + AT_rich Low_complexity Low_complexity 1 28 0 472 228 87 5 chr1 96993065 96993249 -185200415 - L1ME2 LINE L1 -1669 5272 5074 888 217 94 14 chr1 96993252 96993610 -185200054 - MLT1D LTR MaLR -7 498 22 297 109 0 0 chr1 96993610 96993665 -185199999 + (TG)n Simple_repeat Simple_repeat 2 56 0 888 217 94 14 chr1 96993665 96993689 -185199975 - MLT1D LTR MaLR -483 22 1 1361 268 90 52 chr1 96993803 96995484 -185198180 - L1ME2 LINE L1 -4027 3095 1129 21 0 0 0 chr1 96995728 96995749 -185197915 + AT_rich Low_complexity Low_complexity 1 21 0 279 253 63 58 chr1 96995894 96996084 -185197580 - L1ME2 LINE L1 -5967 456 266 261 0 0 0 chr1 96997622 96997651 -185196013 + (CA)n Simple_repeat Simple_repeat 2 30 0 2036 124 28 0 chr1 96997953 96998243 -185195421 - AluSx SINE Alu -14 298 1 7020 65 3 2 chr1 96998359 96999776 -185193888 + L1PA8 LINE L1 4751 6170 -2 266 333 75 4 chr1 97000168 97000331 -185193333 - MIR SINE MIR -69 139 18 1251 84 0 28 chr1 97000916 97001095 -185192569 - AluSg/x SINE Alu 0 312 139 561 290 31 65 chr1 97001329 97001622 -185192042 - L2 LINE L2 -6 3307 3025 1295 261 65 36 chr1 97001623 97002072 -185191592 - MLT1C LTR MaLR 0 467 6 532 308 99 5 chr1 97002077 97002420 -185191244 - L2 LINE L2 -285 3028 1883 212 316 79 26 chr1 97002634 97002710 -185190954 + L2 LINE L2 3193 3272 0 275 330 10 25 chr1 97004018 97004218 -185189446 + MLT2E LTR ERVL 411 607 -21 213 121 0 0 chr1 97004218 97004251 -185189413 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 191 349 0 0 chr1 97004890 97004973 -185188691 - L3 LINE CR1 -919 658 576 842 231 0 21 chr1 97006979 97007165 -185186499 + MER5A DNA MER1_type 1 182 -7 263 276 0 0 chr1 97007415 97007473 -185186191 + MLT2B1 LTR ERVL 1 58 -462 4779 66 2 0 chr1 97007889 97008492 -185185172 - L1PA7 LINE L1 0 6154 5551 1575 57 0 0 chr1 97008493 97008687 -185184977 + L1PA7 LINE L1 5367 5560 -594 493 291 25 41 chr1 97011048 97011244 -185182420 + MIR SINE MIR 45 237 -25 222 278 99 85 chr1 97012422 97012634 -185181030 + MIR SINE MIR 45 259 -3 264 281 0 0 chr1 97012747 97012811 -185180853 + L2 LINE L2 3248 3311 -2 415 208 17 17 chr1 97014650 97014770 -185178894 - Charlie5 DNA MER1_type 0 2624 2505 45 96 0 0 chr1 97014770 97014906 -185178758 + AT_rich Low_complexity Low_complexity 1 136 0 2195 217 47 31 chr1 97014914 97015447 -185178217 + MLT1F LTR MaLR 1 505 0 348 255 10 10 chr1 97015450 97015548 -185178116 + MLT1F-int LTR MaLR 5 102 -1269 751 281 58 4 chr1 97015608 97015882 -185177782 + MLT1F-int LTR MaLR 309 597 -774 2174 120 3 0 chr1 97016081 97016382 -185177282 - AluSp SINE Alu -11 302 1 423 356 11 11 chr1 97016422 97016610 -185177054 + MLT1F-int LTR MaLR 696 883 -488 519 261 34 139 chr1 97016799 97017151 -185176513 + MLT1F-int LTR MaLR 1023 1337 -34 1710 245 119 16 chr1 97017188 97017694 -185175970 + MLT1F1 LTR MaLR 10 567 0 604 204 45 22 chr1 97017694 97017847 -185175817 - MER33 DNA MER1_type -281 43 1 428 324 109 52 chr1 97017867 97018216 -185175448 + L2 LINE L2 2904 3272 0 202 310 0 0 chr1 97018217 97018275 -185175389 + L3 LINE CR1 1460 1517 -60 1638 181 6 19 chr1 97020144 97020459 -185173205 - AluJb SINE Alu -1 311 1 208 135 0 0 chr1 97020519 97020556 -185173108 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 931 183 31 13 chr1 97020556 97020785 -185172879 + L1MA7 LINE L1 6056 6288 -3 1414 181 65 18 chr1 97021713 97021990 -185171674 - AluJb SINE Alu -22 290 1 186 143 0 0 chr1 97022456 97022491 -185171173 + (CA)n Simple_repeat Simple_repeat 1 35 0 434 285 22 7 chr1 97023715 97023852 -185169812 - MER117 DNA MER1_type -58 139 1 382 330 116 62 chr1 97024396 97025148 -185168516 - L2 LINE L2 0 3313 2499 1463 214 28 3 chr1 97025149 97025438 -185168226 + AluJo SINE Alu 1 296 -16 22 35 0 0 chr1 97025445 97025474 -185168190 + AT_rich Low_complexity Low_complexity 1 29 0 287 148 0 33 chr1 97025707 97025768 -185167896 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 379 309 113 18 chr1 97025948 97026116 -185167548 - MIR SINE MIR -7 255 72 21 57 0 0 chr1 97026253 97026288 -185167376 + AT_rich Low_complexity Low_complexity 1 35 0 351 315 94 49 chr1 97026470 97026689 -185166975 - MIR SINE MIR -7 255 22 26 30 0 0 chr1 97027155 97027188 -185166476 + AT_rich Low_complexity Low_complexity 1 33 0 234 379 63 11 chr1 97027665 97027760 -185165904 - L2 LINE L2 -31 3241 3142 2039 138 24 6 chr1 97027781 97028122 -185165542 + MER47A DNA MER2_type 20 366 0 180 77 0 0 chr1 97028229 97028255 -185165409 + (GA)n Simple_repeat Simple_repeat 2 27 0 330 284 56 33 chr1 97028322 97028541 -185165123 - L1M4 LINE L1 -467 5697 5473 1457 204 49 57 chr1 97028768 97028967 -185164697 + MLT1A1 LTR MaLR 1 197 -168 2098 38 0 30 chr1 97028967 97029229 -185164435 - AluY SINE Alu -1 310 57 1457 204 49 57 chr1 97029229 97029397 -185164267 + MLT1A1 LTR MaLR 197 365 0 369 237 136 30 chr1 97029463 97029661 -185164003 - L1MEd LINE L1 -5303 816 598 401 240 30 0 chr1 97030657 97030757 -185162907 + L1MC5 LINE L1 6693 6795 -1166 320 22 0 43 chr1 97031883 97031929 -185161735 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 299 152 0 0 chr1 97033352 97033398 -185160266 + L2 LINE L2 3263 3308 -5 712 167 56 162 chr1 97033922 97034057 -185159607 + MER3 DNA MER1_type 1 102 -107 2243 106 16 47 chr1 97034057 97034443 -185159221 - THE1C LTR MaLR -1 374 1 712 167 56 162 chr1 97034443 97034541 -185159123 + MER3 DNA MER1_type 102 209 0 2708 6 0 31 chr1 97034546 97034866 -185158798 + AluYa5 SINE Alu 1 310 -1 328 341 55 36 chr1 97036025 97036245 -185157419 + MIR SINE MIR 3 226 -36 188 373 56 8 chr1 97036330 97036456 -185157208 - L2 LINE L2 -17 3296 3165 243 345 127 0 chr1 97036640 97036750 -185156914 - L2 LINE L2 0 3272 3149 660 214 0 0 chr1 97036876 97037002 -185156662 + FLAM_C SINE Alu 1 126 -7 297 306 202 0 chr1 97040002 97040126 -185153538 + MIR SINE MIR 53 201 -61 279 0 0 0 chr1 97040158 97040189 -185153475 + (CAT)n Simple_repeat Simple_repeat 3 33 0 216 0 0 0 chr1 97040470 97040494 -185153170 + (TG)n Simple_repeat Simple_repeat 1 24 0 695 221 47 52 chr1 97042329 97042501 -185151163 - MER20 DNA MER1_type -48 171 1 207 100 0 0 chr1 97042791 97042821 -185150843 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 869 255 129 9 chr1 97044613 97044931 -185148733 - L1ME3A LINE L1 -14 6225 5870 779 290 113 7 chr1 97044948 97045346 -185148318 - L1ME3A LINE L1 -447 5792 5354 933 280 49 76 chr1 97045372 97046515 -185147149 - L1ME3A LINE L1 -883 5332 2320 365 241 128 92 chr1 97046521 97046849 -185146815 - L1ME3A LINE L1 -4058 2338 1999 524 307 118 34 chr1 97046999 97047816 -185145848 - L1ME3A LINE L1 -4634 1762 878 524 15 15 0 chr1 97047890 97047955 -185145709 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 1629 192 6 3 chr1 97048268 97048591 -185145073 + L1MA4 LINE L1 5963 6286 -14 1445 246 47 29 chr1 97048744 97048991 -185144673 - Charlie4a DNA MER1_type -1455 506 265 1545 186 55 114 chr1 97048991 97049034 -185144630 - MLT2D LTR ERVL 0 414 370 222 37 0 0 chr1 97049034 97049061 -185144603 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 360 0 0 0 chr1 97049060 97049100 -185144564 + (GA)n Simple_repeat Simple_repeat 1 40 0 1545 186 55 114 chr1 97049061 97049391 -185144273 - MLT2D LTR ERVL -44 370 110 2115 111 0 7 chr1 97049391 97049698 -185143966 + AluSc SINE Alu 3 307 -2 1545 186 55 114 chr1 97049698 97049802 -185143862 - MLT2D LTR ERVL -304 110 1 1445 246 47 29 chr1 97049802 97050045 -185143619 - Charlie4a DNA MER1_type -1696 265 7 479 302 78 28 chr1 97050163 97050342 -185143322 - MIR SINE MIR -56 206 19 21 0 0 0 chr1 97050575 97050596 -185143068 + AT_rich Low_complexity Low_complexity 1 21 0 2133 126 0 0 chr1 97050607 97050908 -185142756 - AluSg SINE Alu -9 301 1 24 32 0 0 chr1 97051425 97051456 -185142208 + AT_rich Low_complexity Low_complexity 1 31 0 723 289 60 15 chr1 97051507 97051773 -185141891 - MLT1E2 LTR MaLR -146 480 203 375 177 0 0 chr1 97051896 97051958 -185141706 + L2 LINE L2 3211 3272 0 313 356 15 0 chr1 97052479 97052611 -185141053 - MER69A DNA AcHobo -43 134 1 272 89 0 22 chr1 97054286 97054331 -185139333 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1735 159 47 7 chr1 97054509 97054805 -185138859 + AluJo SINE Alu 1 308 -4 1851 161 31 52 chr1 97054965 97055349 -185138315 - L1PB4 LINE L1 -13 6143 5768 6904 52 14 9 chr1 97056800 97057756 -185135908 + L1PA7 LINE L1 5190 6149 -5 348 315 46 81 chr1 97059187 97059384 -185134280 + MIR3 SINE MIR 14 203 -5 244 268 56 63 chr1 97060072 97060214 -185133450 + MER5B DNA MER1_type 2 142 -36 242 254 0 17 chr1 97060632 97060691 -185132973 + MIR SINE MIR 83 140 -68 261 269 67 52 chr1 97060749 97060883 -185132781 - MIR SINE MIR -3 259 124 4392 275 116 25 chr1 97060906 97062305 -185131359 + HAL1 LINE L1 17 1288 -1219 2950 89 16 23 chr1 97062305 97062744 -185130920 - L1PA11 LINE L1 -2 6172 5737 4392 275 116 25 chr1 97062744 97063050 -185130614 + HAL1 LINE L1 1288 1565 -942 1687 112 16 8 chr1 97063050 97063301 -185130363 + AluSq SINE Alu 32 284 -29 315 0 0 0 chr1 97063301 97063336 -185130328 + (CA)n Simple_repeat Simple_repeat 2 36 0 4392 275 116 25 chr1 97063336 97063890 -185129774 + HAL1 LINE L1 1564 2507 0 21 0 0 0 chr1 97063965 97063986 -185129678 + AT_rich Low_complexity Low_complexity 1 21 0 236 237 53 142 chr1 97065094 97065263 -185128401 - L2 LINE L2 -7 3306 3153 808 334 107 49 chr1 97065474 97066138 -185127526 - L2 LINE L2 -429 2885 2130 1687 184 0 0 chr1 97066138 97066416 -185127248 + AluJo SINE Alu 19 296 -16 808 334 107 49 chr1 97066416 97066867 -185126797 - L2 LINE L2 -1184 2130 1706 376 188 14 0 chr1 97066867 97067005 -185126659 + (TA)n Simple_repeat Simple_repeat 2 141 0 183 375 16 0 chr1 97067302 97067366 -185126298 - L2 LINE L2 -36 3236 3172 1502 250 25 83 chr1 97067395 97067527 -185126137 + MLT2B1 LTR ERVL 1 139 -381 1794 168 24 42 chr1 97067527 97067908 -185125756 - THE1C LTR MaLR 0 375 2 1502 250 25 83 chr1 97067908 97068281 -185125383 + MLT2B1 LTR ERVL 139 532 12 630 11 35 0 chr1 97068281 97068368 -185125296 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 192 40 0 0 chr1 97068374 97068399 -185125265 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 1502 250 25 83 chr1 97068399 97068437 -185125227 + MLT2B1 LTR ERVL 481 520 0 227 359 130 0 chr1 97068500 97068631 -185125033 - L2 LINE L2 -195 3077 2930 1253 203 42 67 chr1 97069028 97069387 -185124277 - MLT1B LTR MaLR -36 354 5 2754 267 83 38 chr1 97069396 97070170 -185123494 - MLT1B-int LTR MaLR -6 1365 531 398 19 0 19 chr1 97070170 97070222 -185123442 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2754 267 83 38 chr1 97070222 97070488 -185123176 - MLT1B-int LTR MaLR -840 531 278 489 138 11 11 chr1 97070479 97070566 -185123098 - MLT1B-int LTR MaLR -1283 88 2 * 2264 189 19 15 chr1 97070569 97071034 -185122630 + ERVL LTR ERVL 3592 4058 -1706 9367 174 32 11 chr1 97071144 97072837 -185120827 + ERVL LTR ERVL 4037 5764 0 841 184 29 6 chr1 97072837 97072899 -185120765 + Ricksha DNA DNA 351 416 -1630 847 199 143 42 chr1 97072932 97073148 -185120516 + MLT2B1 LTR ERVL 283 520 0 538 133 12 0 chr1 97074264 97074347 -185119317 - MLT1A2 LTR MaLR -290 84 1 25 0 0 0 chr1 97074865 97074890 -185118774 + AT_rich Low_complexity Low_complexity 1 25 0 401 314 77 0 chr1 97076288 97076444 -185117220 - MIR SINE MIR -94 168 1 1110 216 176 13 chr1 97076852 97077245 -185116419 - Charlie1b DNA MER1_type -1 522 66 260 346 59 26 chr1 97077610 97077763 -185115901 - MIR SINE MIR -58 204 47 256 205 154 0 chr1 97077798 97077876 -185115788 + LTR37B LTR ERV1 3 92 -376 302 274 59 0 chr1 97077974 97078076 -185115588 + LTR37A LTR ERV1 111 218 -208 379 225 12 0 chr1 97078139 97078219 -185115445 + MER58 DNA MER1_type 134 2419 -1 1502 108 0 0 chr1 97078542 97078737 -185114927 + AluSx SINE Alu 1 195 -117 1997 191 31 8 chr1 97079990 97080377 -185113287 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr1 97080735 97080764 -185112900 + AT_rich Low_complexity Low_complexity 1 29 0 210 71 0 0 chr1 97081641 97081669 -185111995 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1855 165 52 0 chr1 97081984 97082312 -185111352 + MER7A DNA MER2_type 4 346 0 185 219 98 130 chr1 97082913 97083036 -185110628 - L3 LINE CR1 -869 708 590 281 340 19 10 chr1 97083559 97083662 -185110002 + MIR SINE MIR 20 123 -139 703 200 0 0 chr1 97083711 97083831 -185109833 + AluJb SINE Alu 1 120 -192 723 292 15 0 chr1 97084344 97084539 -185109125 - MIR SINE MIR -1 261 64 385 274 30 7 chr1 97084810 97084945 -185108719 - L1ME4a LINE L1 -3 6118 5981 488 173 0 8 chr1 97085129 97085256 -185108408 + (TA)n Simple_repeat Simple_repeat 2 127 0 25 0 0 0 chr1 97085707 97085732 -185107932 + AT_rich Low_complexity Low_complexity 1 25 0 317 346 0 19 chr1 97085802 97085961 -185107703 - L1ME4a LINE L1 -418 5703 5548 255 337 11 11 chr1 97086749 97086841 -185106823 - MIR SINE MIR -149 113 22 1828 223 3 0 chr1 97086966 97087330 -185106334 - MLT1A1 LTR MaLR 0 365 1 836 274 69 0 chr1 97087390 97087635 -185106029 + MIR SINE MIR 1 262 0 536 284 28 70 chr1 97089022 97089335 -185104329 - L2 LINE L2 -250 3063 2767 900 217 77 4 chr1 97089397 97089632 -185104032 - L1MC3 LINE L1 0 7785 7534 4365 186 30 20 chr1 97089650 97090480 -185103184 - MER21B LTR ERV1 -21 842 5 344 221 53 0 chr1 97090484 97090579 -185103085 - L1MC3 LINE L1 -249 7536 7437 1061 189 66 89 chr1 97090691 97090814 -185102850 - L1MC3 LINE L1 -794 6991 6867 243 0 0 0 chr1 97090814 97090841 -185102823 + (TG)n Simple_repeat Simple_repeat 2 28 0 1061 189 66 89 chr1 97090841 97091067 -185102597 - L1MC3 LINE L1 -918 6867 6650 368 261 176 0 chr1 97091076 97091195 -185102469 - L2 LINE L2 -597 2717 2578 21 36 0 0 chr1 97092087 97092115 -185101549 + AT_rich Low_complexity Low_complexity 1 28 0 228 375 27 44 chr1 97092574 97092757 -185100907 - MIR SINE MIR -55 207 29 269 209 64 81 chr1 97092804 97092913 -185100751 + MIR SINE MIR 94 196 -63 1549 207 28 23 chr1 97093339 97093691 -185099973 - MLT1A1 LTR MaLR 0 365 12 21 0 0 0 chr1 97094442 97094463 -185099201 + AT_rich Low_complexity Low_complexity 1 21 0 286 247 0 54 chr1 97094983 97095076 -185098588 - MIR SINE MIR -38 224 137 465 343 88 32 chr1 97095563 97095846 -185097818 - L2 LINE L2 -4 3309 3011 397 309 62 28 chr1 97095919 97096097 -185097567 - MIR3 SINE MIR -2 206 23 277 222 28 0 chr1 97098826 97098898 -185094766 - MIR SINE MIR -45 217 144 297 306 97 14 chr1 97098974 97099118 -185094546 - MIR SINE MIR -105 157 2 548 216 115 11 chr1 97099189 97099368 -185094296 + MLT2E LTR ERVL 1 193 -435 459 286 80 49 chr1 97099373 97099597 -185094067 - L2 LINE L2 -396 2918 2688 678 287 120 38 chr1 97099597 97099757 -185093907 - L2 LINE L2 -1019 2295 2150 1724 190 3 3 chr1 97099757 97100052 -185093612 - AluJb SINE Alu -17 295 1 678 287 120 38 chr1 97100052 97100232 -185093432 - L2 LINE L2 -1164 2150 1927 231 119 0 0 chr1 97100784 97100826 -185092838 + LTR66 LTR ERVL 398 439 -171 232 75 50 0 chr1 97100826 97100866 -185092798 - L1MC4 LINE L1 -1339 6703 6662 24 0 0 0 chr1 97100914 97100938 -185092726 + AT_rich Low_complexity Low_complexity 1 24 0 1238 282 88 3 chr1 97101362 97101749 -185091915 + LTR16A LTR ERVL 16 435 -15 200 359 0 0 chr1 97101831 97101895 -185091769 + MIR SINE MIR 35 98 -110 1684 208 63 65 chr1 97201933 97202191 -184991473 - L1MEc LINE L1 -1908 4632 4375 1306 201 54 27 chr1 97202191 97202485 -184991179 + AluJb SINE Alu 1 302 -10 1684 208 63 65 chr1 97202485 97202813 -184990851 - L1MEc LINE L1 -2165 4375 4047 1810 167 0 7 chr1 97202822 97203110 -184990554 + AluSx SINE Alu 1 286 -26 198 0 0 0 chr1 97203111 97203133 -184990531 + (CA)n Simple_repeat Simple_repeat 2 23 0 379 221 0 0 chr1 97203133 97203228 -184990436 + L1M4 LINE L1 2913 3007 -3139 1740 156 7 3 chr1 97203292 97203574 -184990090 - AluSx SINE Alu -6 306 24 465 233 23 0 chr1 97203574 97203707 -184989957 - L1MEc LINE L1 -3216 3324 3189 230 56 28 0 chr1 97203721 97203757 -184989907 + (TA)n Simple_repeat Simple_repeat 2 38 0 231 100 25 0 chr1 97203771 97203811 -184989853 + LTR29 LTR ERV1 384 424 -198 * 721 169 44 12 chr1 97203805 97203964 -184989700 + LTR49 LTR ERV1 416 579 -16 2658 111 28 0 chr1 97203964 97204361 -184989303 + MER61E LTR ERV1 1 408 -161 393 148 0 0 chr1 97205256 97205317 -184988347 - MER20 DNA MER1_type 0 219 159 4065 140 33 7 chr1 97205317 97206010 -184987654 + MER50 LTR ERV1 1 711 -23 271 0 0 0 chr1 97206011 97206044 -184987620 - MER20 DNA MER1_type -58 161 129 1717 187 3 3 chr1 97206061 97206366 -184987298 - AluJo SINE Alu -7 305 1 601 302 37 35 chr1 97206378 97206658 -184987006 - L1MEc LINE L1 -4320 2401 2118 2236 118 3 0 chr1 97206658 97206962 -184986702 - AluSx SINE Alu -7 305 1 601 302 37 35 chr1 97206962 97207055 -184986609 - L1MEc LINE L1 -4603 2118 2027 346 248 64 0 chr1 97207080 97207205 -184986459 - L1MEc LINE L1 -4620 1955 1788 313 264 66 9 chr1 97207206 97207312 -184986352 - L1MEc LINE L1 -4847 1693 1582 492 318 34 23 chr1 97207328 97207680 -184985984 - L1MEc LINE L1 -5695 835 480 241 262 107 48 chr1 97208531 97208634 -184985030 + MIR SINE MIR 38 146 -62 21 0 0 0 chr1 97210120 97210141 -184983523 + AT_rich Low_complexity Low_complexity 1 21 0 529 314 117 42 chr1 97210648 97210834 -184982830 + L1M4 LINE L1 4389 4560 -1586 2268 109 0 0 chr1 97210834 97211146 -184982518 - AluSx SINE Alu 0 312 1 529 314 117 42 chr1 97211146 97211465 -184982199 + L1M4 LINE L1 4560 4932 -1214 623 301 97 61 chr1 97212600 97213105 -184980559 - L2 LINE L2 -609 2705 2183 1197 196 9 4 chr1 97213126 97213356 -184980308 - MIR SINE MIR 0 262 32 408 308 126 4 chr1 97213335 97213582 -184980082 - L2 LINE L2 -1131 2183 1907 * 509 249 139 6 chr1 97215650 97215815 -184977849 + MIR SINE MIR 20 206 -56 293 127 0 0 chr1 97218765 97218820 -184974844 + AluSc SINE Alu 245 299 0 225 0 0 0 chr1 97219656 97219681 -184973983 + (A)n Simple_repeat Simple_repeat 1 25 0 334 289 141 14 chr1 97219690 97219832 -184973832 - L2 LINE L2 -535 2779 2620 2085 104 0 4 chr1 97219844 97220158 -184973506 + AluSx SINE Alu 5 317 0 243 294 42 76 chr1 97220211 97220473 -184973191 + L2 LINE L2 2708 2960 -354 21 0 0 0 chr1 97221339 97221360 -184972304 + AT_rich Low_complexity Low_complexity 1 21 0 2156 117 3 7 chr1 97221709 97222007 -184971657 + AluSx SINE Alu 1 297 -15 667 279 81 0 chr1 97222053 97222275 -184971389 - MIR SINE MIR -10 252 13 191 271 65 84 chr1 97222435 97222542 -184971122 - L2 LINE L2 -8 3264 3160 313 309 32 11 chr1 97223776 97223870 -184969794 + L2 LINE L2 3210 3305 -8 2130 122 0 0 chr1 97224125 97224419 -184969245 - AluSx SINE Alu -18 294 1 21 0 0 0 chr1 97224488 97224509 -184969155 + AT_rich Low_complexity Low_complexity 1 21 0 213 344 25 25 chr1 97225038 97225160 -184968504 + L2 LINE L2 3179 3300 -13 936 208 12 0 chr1 97225203 97225376 -184968288 + MER5B DNA MER1_type 1 175 -3 397 306 41 0 chr1 97225690 97225788 -184967876 - L2 LINE L2 -2 3270 3169 210 290 75 58 chr1 97226549 97226718 -184966946 + MIR SINE MIR 21 220 -42 267 344 11 0 chr1 97227078 97227168 -184966496 + MIR SINE MIR 53 143 -119 351 306 31 117 chr1 97227435 97227795 -184965869 + L2 LINE L2 2897 3225 -47 2275 105 3 10 chr1 97228026 97228339 -184965325 + AluSp SINE Alu 3 313 0 216 192 0 39 chr1 97228551 97228603 -184965061 - MIR SINE MIR -64 198 149 223 174 22 0 chr1 97228648 97228694 -184964970 + GA-rich Low_complexity Low_complexity 4 50 0 583 186 111 70 chr1 97228695 97228867 -184964797 + MER63 DNA MER1_type 678 856 -205 1392 184 37 7 chr1 97228869 97229163 -184964501 - MER58B DNA MER1_type 0 341 39 679 185 35 6 chr1 97229181 97229354 -184964310 + MER63 DNA MER1_type 850 1027 -35 266 291 74 61 chr1 97229358 97229506 -184964158 - MIR SINE MIR -98 164 15 838 167 0 0 chr1 97229948 97230074 -184963590 + AluJb SINE Alu 141 266 -46 1068 94 7 0 chr1 97230076 97230225 -184963439 + L1PA10 LINE L1 6007 6156 -12 259 377 34 0 chr1 97231208 97231354 -184962310 - MIR3 SINE MIR -5 203 53 23 33 0 0 chr1 97231954 97231984 -184961680 + AT_rich Low_complexity Low_complexity 1 30 0 188 286 143 0 chr1 97232350 97232413 -184961251 + MIR3 SINE MIR 116 187 -21 2161 115 0 0 chr1 97232802 97233128 -184960536 + AluSq SINE Alu 1 326 0 776 281 52 19 chr1 97233409 97233811 -184959853 + L1MC4a LINE L1 5513 6047 -1761 183 363 27 27 chr1 97235383 97235529 -184958135 + L2 LINE L2 2252 2397 -917 198 349 151 6 chr1 97235736 97235908 -184957756 + L2 LINE L2 2554 2750 -564 450 194 10 0 chr1 97236594 97236692 -184956972 + L1ME2 LINE L1 6064 6162 -2 359 137 14 0 chr1 97237382 97237455 -184956209 + (TG)n Simple_repeat Simple_repeat 1 74 0 25 83 0 0 chr1 97237510 97237570 -184956094 + AT_rich Low_complexity Low_complexity 1 60 0 436 311 168 0 chr1 97238179 97238388 -184955276 + MIR SINE MIR 1 244 -18 184 256 26 0 chr1 97240136 97240175 -184953489 + MER5A DNA MER1_type 107 146 -43 181 333 81 20 chr1 97241445 97241544 -184952120 + L2 LINE L2 3203 3307 -6 266 273 0 15 chr1 97241722 97241788 -184951876 - MIR SINE MIR -110 152 88 250 318 119 72 chr1 97242225 97242502 -184951162 + L2 LINE L2 2935 3224 -48 205 274 206 0 chr1 97243059 97243132 -184950532 + MER91A DNA MER1_type 10 97 -99 267 238 60 48 chr1 97244752 97244836 -184948828 + MIR3 SINE MIR 73 157 -51 209 269 90 0 chr1 97245659 97245726 -184947938 - MER5A DNA MER1_type -77 112 40 416 280 87 78 chr1 97246615 97247281 -184946383 - L2 LINE L2 -12 3301 2575 2839 10 0 0 chr1 97247899 97248208 -184945456 + AluYa5 SINE Alu 1 309 -2 2371 112 59 6 chr1 97248289 97248628 -184945036 + LTR18A LTR ERVL 1 357 0 5009 193 4 33 chr1 97248642 97249078 -184944586 + HERVL18 LTR ERVL 9 456 -5591 1985 137 7 0 chr1 97249078 97249370 -184944294 + AluSx SINE Alu 1 294 -18 5009 193 4 33 chr1 97249370 97249930 -184943734 + HERVL18 LTR ERVL 456 976 -5071 2299 94 94 11 chr1 97249990 97250363 -184943301 - MLT2A1 LTR ERVL -40 404 1 15089 161 11 4 chr1 97250363 97255306 -184938358 + HERVL18 LTR ERVL 971 6047 0 2073 112 141 0 chr1 97255307 97255620 -184938044 + LTR18A LTR ERVL 1 357 0 1909 160 0 13 chr1 97255621 97255933 -184937731 - AluJb SINE Alu -4 308 1 2387 87 0 0 chr1 97256695 97256993 -184936671 - AluSq SINE Alu -15 298 1 731 227 0 0 chr1 97257614 97257755 -184935909 + MIR SINE MIR 13 153 -109 342 287 63 13 chr1 97258194 97258381 -184935283 + MLT1L LTR MaLR 321 597 -2 401 325 110 13 chr1 97259478 97259706 -184933958 - MIR SINE MIR -3 259 10 755 139 13 51 chr1 97259858 97260016 -184933648 + MLT1A1 LTR MaLR 1 152 -213 668 205 137 44 chr1 97262488 97262693 -184930971 + MLT1A1 LTR MaLR 151 374 0 900 209 95 11 chr1 97262808 97263759 -184929905 + L1ME3 LINE L1 4730 5806 -358 2354 138 24 21 chr1 97263765 97264185 -184929479 - MSTB LTR MaLR -5 421 1 305 129 0 129 chr1 97264185 97264255 -184929409 + L1ME3 LINE L1 5798 5858 -308 266 135 0 0 chr1 97264258 97264310 -184929354 + L1ME2 LINE L1 5810 5861 -303 303 203 0 0 chr1 97264324 97264398 -184929266 + (TA)n Simple_repeat Simple_repeat 1 74 0 482 202 48 46 chr1 97264407 97264580 -184929084 + L1ME2 LINE L1 5862 6036 -128 230 279 7 54 chr1 97264608 97264755 -184928909 + L1ME3 LINE L1 6022 6161 -1 561 166 22 14 chr1 97265315 97265454 -184928210 - MER33 DNA MER1_type -9 354 215 277 79 0 0 chr1 97265459 97265497 -184928167 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 * 579 179 142 12 chr1 97265492 97265654 -184928010 - MER33 DNA MER1_type -130 194 12 584 177 136 41 chr1 97265667 97265814 -184927850 - MER20 DNA MER1_type 0 219 59 1462 154 17 27 chr1 97266170 97266463 -184927201 + L1MA4 LINE L1 6000 6289 -11 587 291 88 42 chr1 97266471 97266908 -184926756 + ERVL LTR ERVL 1277 1694 -3960 812 264 45 5 chr1 97266942 97267162 -184926502 + ERVL LTR ERVL 2199 2427 -3337 426 191 29 81 chr1 97267356 97267461 -184926203 + MER58B DNA MER1_type 210 308 -2112 1618 122 38 139 chr1 97267461 97267878 -184925786 - THE1C LTR MaLR 0 375 1 426 191 29 81 chr1 97267878 97267908 -184925756 + MER58B DNA MER1_type 308 338 -3 258 244 49 12 chr1 97268183 97268265 -184925399 - MIR3 SINE MIR -15 193 109 344 225 72 33 chr1 97269464 97269610 -184924054 + MIR SINE MIR 33 139 -69 2533 48 0 10 chr1 97269830 97270144 -184923520 + AluY SINE Alu 1 311 0 1555 62 16 0 chr1 97270548 97270742 -184922922 - AluSc SINE Alu -16 293 97 253 345 12 0 chr1 97270756 97270840 -184922824 + MIR SINE MIR 53 137 -125 229 208 0 0 chr1 97271051 97271099 -184922565 - MER94 DNA DNA -86 48 1 25 51 0 0 chr1 97272078 97272117 -184921547 + AT_rich Low_complexity Low_complexity 1 39 0 9755 171 36 18 chr1 97272153 97273862 -184919802 - L1PB1 LINE L1 -1 6150 4473 192 77 0 0 chr1 97273862 97273888 -184919776 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 9755 171 36 18 chr1 97273888 97274542 -184919122 - L1PB1 LINE L1 -1678 4473 3832 2316 89 3 0 chr1 97274542 97274833 -184918831 - AluSg1 SINE Alu -17 292 1 9755 171 36 18 chr1 97274833 97275670 -184917994 - L1PB1 LINE L1 -2319 3832 2903 26 0 0 0 chr1 97278181 97278207 -184915457 + AT_rich Low_complexity Low_complexity 1 26 0 2137 127 0 37 chr1 97278286 97278610 -184915054 + AluSx SINE Alu 1 312 0 597 242 119 0 chr1 97279024 97279284 -184914380 - HsTC2 DNA Tc2 -13 1885 1595 817 159 18 6 chr1 97280610 97280773 -184912891 - L1MB8 LINE L1 -5 6173 6009 278 252 82 6 chr1 97280978 97281137 -184912527 - L1ME4a LINE L1 -124 5997 5827 374 303 40 29 chr1 97281325 97281500 -184912164 - L1ME4a LINE L1 -280 5841 5665 22 35 0 0 chr1 97283014 97283043 -184910621 + AT_rich Low_complexity Low_complexity 1 29 0 239 200 0 31 chr1 97283047 97283112 -184910552 - L1ME4a LINE L1 -113 6008 5946 26 0 0 0 chr1 97284321 97284347 -184909317 + AT_rich Low_complexity Low_complexity 1 26 0 2713 135 14 5 chr1 97285696 97286118 -184907546 - MSTA LTR MaLR 0 428 3 2135 122 44 22 chr1 97286119 97286479 -184907185 + THE1C LTR MaLR 8 375 0 10017 123 16 31 chr1 97286479 97288083 -184905581 + THE1C-int LTR MaLR 1 1580 0 2276 146 5 8 chr1 97288083 97288459 -184905205 + THE1C LTR MaLR 1 375 0 333 242 56 31 chr1 97289003 97289164 -184904500 - MER103 DNA DNA -1 165 1 35 41 0 0 chr1 97289384 97289433 -184904231 + AT_rich Low_complexity Low_complexity 1 49 0 451 246 57 8 chr1 97289548 97289670 -184903994 + MIR SINE MIR 74 201 -61 436 304 67 97 chr1 97289675 97290076 -184903588 + L2 LINE L2 2881 3269 -44 189 305 29 109 chr1 97290158 97290368 -184903296 - L2 LINE L2 -1335 1979 1787 229 284 176 0 chr1 97290372 97290446 -184903218 + MER20B DNA MER1_type 97 183 -600 22 80 0 0 chr1 97290654 97290704 -184902960 + AT_rich Low_complexity Low_complexity 1 50 0 210 292 0 0 chr1 97290784 97290832 -184902832 + L2 LINE L2 3266 3313 0 457 204 19 29 chr1 97291007 97291110 -184902554 - L2 LINE L2 -18 3295 3194 301 178 0 0 chr1 97291349 97291403 -184902261 + FLAM SINE Alu 76 119 -14 321 151 17 34 chr1 97291406 97291525 -184902139 + (TA)n Simple_repeat Simple_repeat 2 118 0 635 180 0 31 chr1 97291530 97291658 -184902006 + FRAM SINE Alu 4 127 -49 2946 113 29 0 chr1 97291844 97292294 -184901370 - L1PB2 LINE L1 0 6151 5689 22 0 0 0 chr1 97292704 97292726 -184900938 + AT_rich Low_complexity Low_complexity 1 22 0 2308 91 0 10 chr1 97292765 97293063 -184900601 - AluSc SINE Alu -14 295 1 23 33 0 0 chr1 97293284 97293314 -184900350 + AT_rich Low_complexity Low_complexity 1 30 0 610 233 133 60 chr1 97296137 97296468 -184897196 - L1ME LINE L1 -359 5762 5408 227 54 27 0 chr1 97297376 97297413 -184896251 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 1591 266 113 48 chr1 97297467 97298219 -184895445 - HAL1 LINE L1 -601 1906 1106 1478 138 115 26 chr1 97298352 97298500 -184895164 - AluJo SINE Alu -19 293 160 576 65 0 0 chr1 97298500 97298577 -184895087 + (TG)n Simple_repeat Simple_repeat 2 78 0 1478 138 115 26 chr1 97298577 97298697 -184894967 - AluJo SINE Alu -152 160 1 24 0 0 0 chr1 97298712 97298736 -184894928 + AT_rich Low_complexity Low_complexity 1 24 0 289 263 88 12 chr1 97299568 97299648 -184894016 + L2 LINE L2 3169 3254 -18 529 285 67 16 chr1 97299668 97299861 -184893803 - MIR SINE MIR -2 260 58 727 283 105 68 chr1 97300039 97300449 -184893215 - MLT1J LTR MaLR -1 510 86 207 363 73 0 chr1 97300483 97300607 -184893057 + L2 LINE L2 2918 3050 -222 228 214 36 18 chr1 97300653 97300709 -184892955 + L2 LINE L2 3254 3310 -3 28 29 0 0 chr1 97301269 97301304 -184892360 + AT_rich Low_complexity Low_complexity 1 35 0 1467 258 167 2 chr1 97301555 97302004 -184891660 + L2 LINE L2 2183 2705 -609 2038 118 20 3 chr1 97302012 97302309 -184891355 + AluSx SINE Alu 1 302 -10 1333 218 39 7 chr1 97302380 97302660 -184891004 + AluJb SINE Alu 3 291 -21 26 50 0 0 chr1 97302660 97302700 -184890964 + AT_rich Low_complexity Low_complexity 1 40 0 433 263 174 52 chr1 97302700 97303128 -184890536 + L2 LINE L2 2710 3220 -52 21 89 0 0 chr1 97303235 97303291 -184890373 + AT_rich Low_complexity Low_complexity 1 56 0 1732 252 41 2 chr1 97303445 97303861 -184889803 + LTR40b LTR ERVL 26 457 -5 22 0 0 0 chr1 97304310 97304332 -184889332 + AT_rich Low_complexity Low_complexity 1 22 0 2087 130 20 3 chr1 97305151 97305452 -184888212 + AluSx SINE Alu 1 306 -6 28 0 0 0 chr1 97306198 97306226 -184887438 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 97306685 97306706 -184886958 + AT_rich Low_complexity Low_complexity 1 21 0 283 374 27 0 chr1 97307340 97307487 -184886177 + L2 LINE L2 3162 3312 -1 324 317 39 0 chr1 97308954 97309058 -184884606 + L2 LINE L2 3205 3312 -1 1715 107 27 4 chr1 97309175 97309438 -184884226 + L1PA13 LINE L1 5893 6161 -2 234 356 76 8 chr1 97310841 97310959 -184882705 - L2 LINE L2 -3 3269 3144 7265 78 17 3 chr1 97313102 97314864 -184878800 + L1PA7 LINE L1 4379 6154 0 42 65 0 0 chr1 97316573 97316650 -184877014 + AT_rich Low_complexity Low_complexity 1 77 0 203 304 22 0 chr1 97317623 97317669 -184875995 + L2 LINE L2 3140 3186 -86 471 145 157 32 chr1 97317911 97318083 -184875581 - MIR SINE MIR -13 249 7 1293 138 192 24 chr1 97319453 97319750 -184873914 + MSTA LTR MaLR 1 347 -81 5871 90 9 23 chr1 97319750 97320445 -184873219 + L1PB1 LINE L1 5277 5959 -192 2779 10 0 0 chr1 97320445 97320747 -184872917 + AluY SINE Alu 1 302 -9 5871 90 9 23 chr1 97320747 97320931 -184872733 + L1PB1 LINE L1 5959 6144 -7 25334 108 37 7 chr1 97321379 97325194 -184868470 - HERVH48 LTR ERV1 -2727 3927 1 2203 111 47 64 chr1 97325194 97325599 -184868065 - MER48 LTR ERV1 0 398 1 978 244 48 16 chr1 97325644 97325960 -184867704 + L1M4 LINE L1 3532 3857 -2289 2510 240 85 40 chr1 97325973 97327093 -184866571 + L1M4 LINE L1 3927 5096 -1050 35 0 0 0 chr1 97327118 97327153 -184866511 + AT_rich Low_complexity Low_complexity 1 35 0 219 88 0 0 chr1 97327294 97327328 -184866336 + (TA)n Simple_repeat Simple_repeat 2 35 0 686 250 122 21 chr1 97329586 97329874 -184863790 - L1MC5 LINE L1 -386 7575 7259 31142 48 4 3 chr1 97329992 97334723 -184858941 - L1PA5 LINE L1 -4 6150 1413 1211 124 26 0 chr1 97334723 97334916 -184858748 + L1PA5 LINE L1 1246 1443 -4703 696 211 111 14 chr1 97334915 97335164 -184858500 - L1MC4 LINE L1 -728 7233 6979 * 24 0 0 0 chr1 97335259 97335283 -184858381 + AT_rich Low_complexity Low_complexity 1 24 0 1880 160 24 18 chr1 97335455 97335703 -184857961 + MER44D DNA MER2_type 1 246 -2245 2175 157 61 10 chr1 97335703 97336110 -184857554 + MSTA LTR MaLR 1 428 0 1880 160 24 18 chr1 97336110 97336198 -184857466 + MER44D DNA MER2_type 246 609 0 929 120 23 17 chr1 97336568 97336743 -184856921 + L1MA5A LINE L1 6103 6278 -19 26 30 0 0 chr1 97336781 97336814 -184856850 + AT_rich Low_complexity Low_complexity 1 33 0 260 306 72 31 chr1 97336986 97337179 -184856485 - HAL1b LINE L1 -816 532 332 28 61 0 0 chr1 97338582 97338631 -184855033 + AT_rich Low_complexity Low_complexity 1 49 0 232 235 88 0 chr1 97340002 97340070 -184853594 - L2 LINE L2 0 3272 3199 275 258 45 0 chr1 97340230 97340296 -184853368 + MLT1J LTR MaLR 110 178 -333 1295 235 221 7 chr1 97340579 97341022 -184852642 + MLT1F LTR MaLR 1 538 -4 724 293 81 100 chr1 97341277 97342296 -184851368 - L2 LINE L2 -85 3228 2222 257 205 0 51 chr1 97342536 97342614 -184851050 - Charlie4 DNA MER1_type -643 1318 1245 1117 205 36 53 chr1 97343228 97343449 -184850215 - Charlie4 DNA MER1_type -1664 297 81 2341 96 0 0 chr1 97343449 97343751 -184849913 + AluSx SINE Alu 1 302 -10 1117 205 36 53 chr1 97343751 97343831 -184849833 - Charlie4 DNA MER1_type -1880 81 1 445 338 75 14 chr1 97344808 97345021 -184848643 - MIR SINE MIR -12 250 25 311 273 82 21 chr1 97345266 97345460 -184848204 - LTR33A LTR ERVL -51 472 267 21 36 0 0 chr1 97346415 97346443 -184847221 + AT_rich Low_complexity Low_complexity 1 28 0 271 233 42 138 chr1 97346705 97346894 -184846770 + LTR37A LTR ERV1 14 184 -242 665 159 7 7 chr1 97346914 97347052 -184846612 + LTR37A LTR ERV1 289 426 0 440 248 109 36 chr1 97347061 97347223 -184846441 - MIR SINE MIR -61 147 22 274 275 31 11 chr1 97347319 97347456 -184846208 - MIR SINE MIR 0 262 78 241 200 0 55 chr1 97347489 97347544 -184846120 + MER5B DNA MER1_type 4 55 -123 239 191 0 21 chr1 97347548 97347595 -184846069 - MER5B DNA MER1_type -113 65 20 547 279 61 25 chr1 97348265 97348491 -184845173 + MLT1L LTR MaLR 286 615 0 1523 188 10 23 chr1 97349201 97349504 -184844160 - AluJo SINE Alu -13 299 1 2197 174 28 0 chr1 97349974 97350366 -184843298 - MER57A LTR ERV1 0 403 1 616 206 20 20 chr1 97350500 97350646 -184843018 - LTR54B LTR ERV1 -352 146 1 6830 188 13 19 chr1 97350650 97351949 -184841715 - LTR23-int LTR ERV1 -420 7117 5826 5488 167 61 63 chr1 97352289 97353659 -184840005 - LTR23-int LTR ERV1 -1732 5805 4440 280 163 0 0 chr1 97353672 97353715 -184839949 - MER4D LTR ERV1 -73 830 788 477 199 54 103 chr1 97353715 97354013 -184839651 - LTR23-int LTR ERV1 -2286 3977 2357 676 217 116 35 chr1 97354016 97354484 -184839180 - LTR23-int LTR ERV1 -2817 2119 1734 583 209 37 15 chr1 97354494 97354628 -184839036 + MIR SINE MIR 99 235 -27 189 244 0 0 chr1 97354933 97354978 -184838686 + L2 LINE L2 1966 2010 -1304 314 301 97 10 chr1 97355917 97356020 -184837644 - MIR SINE MIR -131 131 20 253 372 34 0 chr1 97356327 97356475 -184837189 - LTR67 LTR ERVL -2 555 403 1663 284 176 57 chr1 97356611 97356705 -184836959 + MER45C DNA AcHobo 2 83 -1498 2587 64 0 0 chr1 97356705 97357016 -184836648 - AluY SINE Alu 0 311 1 1663 284 176 57 chr1 97357016 97357769 -184835895 + MER45C DNA AcHobo 83 950 -3 351 304 33 0 chr1 97357795 97357887 -184835777 - LTR67 LTR ERVL -364 193 99 277 224 75 37 chr1 97357993 97358100 -184835564 + L2 LINE L2 3199 3309 -4 768 212 13 20 chr1 97359303 97359454 -184834210 - MLT1D LTR MaLR -353 152 3 1608 180 29 14 chr1 97359638 97359916 -184833748 - AluJo SINE Alu -30 282 1 23 0 0 0 chr1 97362004 97362027 -184831637 + AT_rich Low_complexity Low_complexity 1 23 0 234 287 60 48 chr1 97362206 97362373 -184831291 + L1MB7 LINE L1 3788 3956 -2190 14619 152 56 9 chr1 97362732 97362858 -184830806 + L1MA1 LINE L1 3529 3648 -4073 180 0 0 0 chr1 97362858 97362878 -184830786 + (CA)n Simple_repeat Simple_repeat 2 21 0 14619 152 56 9 chr1 97362878 97366749 -184826915 + L1MA1 LINE L1 3648 7721 0 251 264 0 0 chr1 97366771 97366824 -184826840 + GA-rich Low_complexity Low_complexity 1 53 0 5325 51 8 3 chr1 97366852 97367520 -184826144 + L1PA8 LINE L1 5498 6168 -4 4365 161 90 7 chr1 97367822 97368635 -184825029 - MER49 LTR ERV1 -43 880 1 602 330 38 17 chr1 97369082 97369318 -184824346 - MIR SINE MIR -11 251 11 26 0 0 0 chr1 97369510 97369536 -184824128 + AT_rich Low_complexity Low_complexity 1 26 0 617 151 0 0 chr1 97369603 97369696 -184823968 + AluJb SINE Alu 205 297 -15 2119 129 0 3 chr1 97369993 97370303 -184823361 + AluSg SINE Alu 1 309 -1 4459 257 70 39 chr1 97370421 97372074 -184821590 + L1MEc LINE L1 37 1741 -4655 3359 224 148 45 chr1 97372205 97372592 -184821072 + L1MB7 LINE L1 4058 4403 -1781 2008 164 0 0 chr1 97372592 97372890 -184820774 + AluSx SINE Alu 1 298 -14 3359 224 148 45 chr1 97372890 97373682 -184819982 + L1MB7 LINE L1 4403 5111 -1073 2250 134 103 0 chr1 97373682 97374070 -184819594 - MSTA LTR MaLR 0 428 1 3359 224 148 45 chr1 97374070 97374794 -184818870 + L1MB7 LINE L1 5111 6184 0 316 359 16 0 chr1 97376164 97376292 -184817372 + LTR67 LTR ERVL 407 536 -21 363 296 107 70 chr1 97376385 97376662 -184817002 - MLT1J LTR MaLR -50 461 161 1740 150 13 42 chr1 97376662 97376969 -184816695 + AluJo SINE Alu 1 298 -14 363 296 107 70 chr1 97376969 97377120 -184816544 - MLT1J LTR MaLR -350 161 17 235 277 12 36 chr1 97377378 97377461 -184816203 - L2 LINE L2 -49 3264 3184 1953 158 7 0 chr1 97377838 97378136 -184815528 + AluJb SINE Alu 1 300 -12 300 211 0 0 chr1 97378142 97378218 -184815446 + GA-rich Low_complexity Low_complexity 3 78 0 1204 155 114 27 chr1 97378219 97378534 -184815130 - LTR44 LTR ERV1 -129 390 1 516 234 82 63 chr1 97378580 97378883 -184814781 - L1MC4a LINE L1 -1865 6337 6029 1100 297 87 50 chr1 97378906 97379210 -184814454 - L1MC4a LINE L1 -1170 5370 5079 572 229 57 0 chr1 97379210 97379332 -184814332 - FLAM_A SINE Alu -4 129 1 1100 297 87 50 chr1 97379332 97380204 -184813460 - L1MC4a LINE L1 -1461 5079 4151 596 310 128 44 chr1 97380463 97381658 -184812006 - L1MDa LINE L1 -2792 3748 2430 2029 173 45 123 chr1 97381762 97382324 -184811340 - MLT2B1 LTR ERVL -2 518 1 12109 164 34 10 chr1 97382324 97384446 -184809218 - ERVL-B1 LTR ERVL -7 5757 3586 236 279 37 29 chr1 97384765 97384901 -184808763 - HAL1b LINE L1 -497 851 715 21 0 0 0 chr1 97385264 97385285 -184808379 + AT_rich Low_complexity Low_complexity 1 21 0 182 209 9 165 chr1 97385666 97385781 -184807883 + MIR SINE MIR 116 212 -50 14654 154 29 9 chr1 97386360 97388954 -184804710 + L1M1 LINE L1 12 2657 -4908 6123 0 1 0 chr1 97388961 97389669 -184803995 - L1HS LINE L1 0 6155 5447 722 63 71 24 chr1 97389667 97389793 -184803871 + L1M1 LINE L1 2837 2968 -4597 * 3828 116 62 7 chr1 97389796 97390471 -184803193 + L1M1 LINE L1 2674 3385 -4180 300 326 124 0 chr1 97390936 97391065 -184802599 - MIR SINE MIR -31 231 87 1986 137 3 13 chr1 97391087 97391386 -184802278 - AluSx SINE Alu -16 296 1 2923 9 0 0 chr1 97392015 97392332 -184801332 + AluYb8 SINE Alu 1 317 -1 453 268 42 7 chr1 97393475 97393617 -184800047 + MIR SINE MIR 104 250 -12 252 359 43 17 chr1 97394321 97394438 -184799226 - L2 LINE L2 -10 3303 3184 712 234 146 0 chr1 97394575 97394733 -184798931 - MER5A DNA MER1_type -2 187 7 273 134 164 0 chr1 97394747 97394814 -184798850 - MER5B DNA MER1_type 0 178 101 197 284 40 27 chr1 97395697 97395771 -184797893 + L2 LINE L2 218 292 -3022 346 290 11 0 chr1 97395802 97395895 -184797769 + MIR SINE MIR 152 245 -17 696 221 82 54 chr1 97395999 97396245 -184797419 + MIR SINE MIR 1 257 -5 261 301 11 0 chr1 97396542 97396635 -184797029 - L1P LINE L1 -2460 3686 3593 2099 114 16 16 chr1 97396732 97397039 -184796625 - AluSx SINE Alu -5 307 1 248 290 65 9 chr1 97397103 97397334 -184796330 - L1M4 LINE L1 -2691 3455 3212 781 274 125 48 chr1 97397341 97397579 -184796085 - L1M4 LINE L1 -2983 3163 2945 1690 164 25 14 chr1 97397579 97397865 -184795799 + AluJo SINE Alu 5 293 -19 781 274 125 48 chr1 97397865 97398162 -184795502 - L1M4 LINE L1 -3201 2945 2587 358 298 22 34 chr1 97398189 97398367 -184795297 - L1M4 LINE L1 -3739 2407 2232 387 243 186 7 chr1 97398866 97399006 -184794658 + MIR SINE MIR 79 243 -19 23 33 0 0 chr1 97399625 97399655 -184794009 + AT_rich Low_complexity Low_complexity 1 30 0 2014 130 3 0 chr1 97400093 97400406 -184793258 - AluSq SINE Alu 0 314 1 662 290 204 13 chr1 97401511 97401894 -184791770 + L2 LINE L2 1937 2392 -922 2268 105 0 7 chr1 97402014 97402319 -184791345 + AluSx SINE Alu 1 303 -9 1885 146 7 17 chr1 97402464 97402766 -184790898 + AluSx SINE Alu 2 300 -12 2576 209 58 22 chr1 97402923 97403670 -184789994 - L1ME1 LINE L1 0 6178 5380 417 268 191 23 chr1 97403763 97403983 -184789681 + MIR SINE MIR 5 261 -1 310 276 0 122 chr1 97404500 97404656 -184789008 + L2 LINE L2 3175 3311 -2 192 328 0 0 chr1 97404675 97404733 -184788931 - L2 LINE L2 -323 2949 2892 514 273 45 7 chr1 97404766 97404920 -184788744 - MIR SINE MIR 0 262 103 354 314 103 70 chr1 97404946 97405315 -184788349 - L2 LINE L2 -479 2835 2455 240 100 0 0 chr1 97405645 97405685 -184787979 + (TG)n Simple_repeat Simple_repeat 2 41 0 832 245 63 21 chr1 97406845 97407082 -184786582 - MIR SINE MIR -4 258 12 196 208 62 21 chr1 97407185 97407233 -184786431 - L3 LINE CR1 -155 1422 1373 1374 179 96 14 chr1 97408479 97408832 -184784832 - MER31B LTR ERV1 -84 382 1 1170 255 108 7 chr1 97408833 97409241 -184784423 + L1ME3 LINE L1 5600 6048 -114 343 245 53 40 chr1 97410453 97410604 -184783060 + LTR16C LTR ERVL 339 491 0 4077 22 0 0 chr1 97410780 97411279 -184782385 + L1P LINE L1 4159 4657 -1489 375 320 70 6 chr1 97412464 97412636 -184781028 + MIR SINE MIR 68 250 -12 277 135 54 95 chr1 97413118 97413192 -184780472 + MIR SINE MIR 132 202 -60 244 248 29 29 chr1 97413193 97413298 -184780366 + L1MD3 LINE L1 7891 7995 0 279 116 0 0 chr1 97413305 97413348 -184780316 + MIR SINE MIR 216 258 -4 260 229 12 0 chr1 97414331 97414414 -184779250 + (CA)n Simple_repeat Simple_repeat 2 85 0 313 314 186 0 chr1 97414543 97414645 -184779019 - L2 LINE L2 -1 3271 3151 23 0 0 0 chr1 97414916 97414939 -184778725 + AT_rich Low_complexity Low_complexity 1 23 0 335 282 92 0 chr1 97415031 97415162 -184778502 - MIR SINE MIR -97 165 23 1168 272 143 35 chr1 97415174 97415776 -184777888 + L2 LINE L2 1512 2178 -1136 570 236 127 36 chr1 97416259 97416479 -184777185 - MIR SINE MIR -4 258 19 627 219 92 15 chr1 97417514 97417572 -184776092 - MER5A DNA MER1_type 0 189 137 2265 39 0 0 chr1 97417572 97417830 -184775834 + AluY SINE Alu 37 294 -17 627 219 92 15 chr1 97417830 97417942 -184775722 - MER5A DNA MER1_type -52 137 4 508 358 57 57 chr1 97418658 97419111 -184774553 - L2 LINE L2 0 3272 2820 1408 162 5 0 chr1 97420181 97420391 -184773273 - AluJb SINE Alu -20 292 82 628 152 0 101 chr1 97420395 97420533 -184773131 - FLAM_C SINE Alu -9 124 1 554 321 82 38 chr1 97420771 97421111 -184772553 + L1ME4a LINE L1 3602 3956 -2190 2145 95 14 20 chr1 97421410 97421704 -184771960 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr1 97422097 97422118 -184771546 + AT_rich Low_complexity Low_complexity 1 21 0 901 332 142 13 chr1 97422152 97422866 -184770798 + L1ME4a LINE L1 3967 4772 -1374 2398 63 0 3 chr1 97422866 97423177 -184770487 + AluY SINE Alu 1 310 0 473 283 187 3 chr1 97423611 97423672 -184769992 + L1ME4a LINE L1 5309 5357 -764 1628 132 0 28 chr1 97423672 97423923 -184769741 + AluJb SINE Alu 69 312 0 473 283 187 3 chr1 97423923 97424161 -184769503 + L1ME4a LINE L1 5357 5663 -458 1938 139 10 13 chr1 97424399 97424702 -184768962 - AluSx SINE Alu -10 302 1 36 0 0 0 chr1 97424710 97424746 -184768918 + AT_rich Low_complexity Low_complexity 1 36 0 327 240 104 16 chr1 97424818 97424943 -184768721 + L1ME4a LINE L1 5982 6117 -4 226 327 125 30 chr1 97426378 97426546 -184767118 + MER5A DNA MER1_type 6 189 0 199 222 333 17 chr1 97426858 97426975 -184766689 - MIR SINE MIR -6 256 103 192 246 35 53 chr1 97426989 97427046 -184766618 - L2 LINE L2 -12 3260 3205 1800 174 50 11 chr1 97427082 97427443 -184766221 - THE1C LTR MaLR 0 375 1 2074 136 49 27 chr1 97429119 97429281 -184764383 - THE1C LTR MaLR 0 375 218 225 0 0 0 chr1 97429281 97429306 -184764358 + (GA)n Simple_repeat Simple_repeat 1 25 0 2074 136 49 27 chr1 97429306 97429510 -184764154 - THE1C LTR MaLR -157 218 1 23 0 0 0 chr1 97431629 97431652 -184762012 + AT_rich Low_complexity Low_complexity 1 23 0 199 74 0 0 chr1 97432465 97432492 -184761172 + L2 LINE L2 3139 3165 -107 1085 245 84 42 chr1 97433155 97433584 -184760080 - LTR16A1 LTR ERVL 0 457 11 1687 158 20 50 chr1 97434047 97434350 -184759314 + AluJb SINE Alu 1 294 -18 370 301 123 0 chr1 97435103 97435249 -184758415 + MIR3 SINE MIR 34 197 -11 180 111 0 0 chr1 97438032 97438059 -184755605 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1089 219 23 5 chr1 97439035 97439250 -184754414 - MER20 DNA MER1_type 0 219 1 490 273 149 10 chr1 97439267 97439461 -184754203 + MIR SINE MIR 42 262 0 2323 77 7 0 chr1 97440005 97440291 -184753373 - AluSc SINE Alu -21 288 1 2126 111 17 0 chr1 97441124 97441413 -184752251 + AluSq SINE Alu 1 294 -19 468 35 0 0 chr1 97441415 97441473 -184752191 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 244 226 52 22 chr1 97442453 97442578 -184751086 + MER5A DNA MER1_type 8 189 0 286 309 12 12 chr1 97444097 97444181 -184749483 - L2 LINE L2 0 3272 3189 26 30 0 0 chr1 97444631 97444664 -184749000 + AT_rich Low_complexity Low_complexity 1 33 0 272 175 0 0 chr1 97445998 97446055 -184747609 + HERVK22 LTR ERVK 279 335 -7618 301 241 26 26 chr1 97449148 97449264 -184744400 + HERVK22 LTR ERVK 4498 4613 -2224 321 339 35 35 chr1 97450446 97450898 -184742766 + HERVK22 LTR ERVK 6071 6522 -315 219 272 53 61 chr1 97452508 97452622 -184741042 + L2 LINE L2 791 903 -2411 255 392 20 20 chr1 97452842 97452944 -184740720 - L2 LINE L2 0 3272 3171 6028 91 10 0 chr1 97452987 97453874 -184739790 + L1PA14 LINE L1 5266 6161 0 23 0 0 0 chr1 97454169 97454192 -184739472 + AT_rich Low_complexity Low_complexity 1 23 0 1385 156 44 8 chr1 97454199 97454250 -184739414 - L1MA7 LINE L1 -11 6280 6232 312 27 0 0 chr1 97454250 97454287 -184739377 + (TA)n Simple_repeat Simple_repeat 2 38 0 1385 156 44 8 chr1 97454287 97454614 -184739050 - L1MA7 LINE L1 -59 6232 5782 360 0 0 0 chr1 97454628 97454668 -184738996 + (TG)n Simple_repeat Simple_repeat 2 41 0 224 200 17 0 chr1 97454670 97454730 -184738934 + (TA)n Simple_repeat Simple_repeat 1 61 0 2115 149 33 3 chr1 97454766 97455156 -184738508 - L1MA7 LINE L1 -535 5756 5355 19619 65 10 8 chr1 97455156 97457783 -184735881 + HERVL-A1 LTR ERVL 3015 5646 -8 3371 72 19 0 chr1 97457783 97458216 -184735448 + MLT2A1 LTR ERVL 4 444 0 1434 158 17 7 chr1 97458216 97458507 -184735157 - L1MA7 LINE L1 -786 5360 5067 195 42 0 0 chr1 97459361 97459385 -184734279 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1275 311 77 23 chr1 97459425 97459998 -184733666 - MER115 DNA AcHobo -1 692 89 4807 200 32 23 chr1 97459999 97460148 -184733516 - MER45B DNA AcHobo -541 1040 894 219 36 0 0 chr1 97460148 97460176 -184733488 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 4807 200 32 23 chr1 97460176 97461057 -184732607 - MER45B DNA AcHobo -687 894 1 241 320 62 31 chr1 97461098 97461226 -184732438 - MIR SINE MIR -128 134 3 707 227 55 41 chr1 97461529 97461749 -184731915 - MIR SINE MIR -8 254 32 759 139 0 66 chr1 97462400 97462537 -184731127 - FLAM_C SINE Alu -4 129 2 207 152 0 0 chr1 97462954 97463000 -184730664 + T-rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr1 97463123 97463153 -184730511 + AT_rich Low_complexity Low_complexity 1 30 0 397 231 323 0 chr1 97463425 97463555 -184730109 - MER5A DNA MER1_type -7 182 11 252 271 198 10 chr1 97464227 97464323 -184729341 - L2 LINE L2 -33 3280 3167 210 118 0 0 chr1 97464323 97464357 -184729307 + (TAATG)n Simple_repeat Simple_repeat 3 36 0 556 342 49 23 chr1 97465621 97465966 -184727698 - L2 LINE L2 -1052 2262 1909 3141 171 74 35 chr1 97466392 97467633 -184726031 - LTR12 LTR ERV1 -21 1523 9 1938 200 53 29 chr1 97467983 97468439 -184725225 - MLT1C LTR MaLR 0 467 1 4593 140 52 13 chr1 97468859 97468950 -184724714 + L1PA16 LINE L1 5231 5317 -849 2079 95 4 7 chr1 97468950 97469224 -184724440 + AluSg SINE Alu 17 289 -21 4593 140 52 13 chr1 97469224 97470015 -184723649 + L1PA16 LINE L1 5317 6148 -18 21 0 0 0 chr1 97470018 97470039 -184723625 + AT_rich Low_complexity Low_complexity 1 21 0 263 337 0 10 chr1 97470054 97470152 -184723512 - MIR3 SINE MIR -5 203 107 384 207 5 23 chr1 97470475 97470605 -184723059 + MLT1K LTR MaLR 142 248 -340 832 289 51 8 chr1 97470851 97471086 -184722578 - MIR SINE MIR -13 249 5 426 351 26 32 chr1 97471113 97471267 -184722397 + L2 LINE L2 3111 3263 -9 4139 139 27 28 chr1 97471428 97472178 -184721486 - L1MB3 LINE L1 -2 6181 5433 210 126 84 42 chr1 97472624 97472719 -184720945 + (TTATA)n Simple_repeat Simple_repeat 2 100 0 3454 8 0 0 chr1 97472817 97473205 -184720459 - L1PA2 LINE L1 0 6155 5768 616 196 152 44 chr1 97473811 97473969 -184719695 - MER5A DNA MER1_type 0 189 15 2145 130 0 10 chr1 97473970 97474269 -184719395 - AluSx SINE Alu -14 298 3 1188 69 0 50 chr1 97474353 97474512 -184719152 + AluSg/x SINE Alu 145 295 -17 329 297 23 16 chr1 97474563 97474691 -184718973 + MLT1J LTR MaLR 277 405 -106 2323 82 0 7 chr1 97474858 97475151 -184718513 + AluSc SINE Alu 1 291 -18 7457 196 42 20 chr1 97475223 97478419 -184715245 - L1MC1 LINE L1 0 6613 3350 10296 149 87 45 chr1 97478420 97480868 -184712796 - L1MC1 LINE L1 -3855 2571 21 297 247 37 12 chr1 97480956 97481015 -184712649 - MIR SINE MIR 0 262 199 351 0 0 0 chr1 97481015 97481054 -184712610 + (TA)n Simple_repeat Simple_repeat 2 40 0 297 247 37 12 chr1 97481054 97481075 -184712589 - MIR SINE MIR -63 199 180 188 111 28 0 chr1 97481197 97481233 -184712431 + A-rich Low_complexity Low_complexity 1 37 0 692 273 92 17 chr1 97481739 97481977 -184711687 + MIR SINE MIR 3 258 -4 402 312 54 43 chr1 97481991 97482270 -184711394 - LTR16A1 LTR ERVL 0 457 176 548 298 41 6 chr1 97482528 97482699 -184710965 + MIR SINE MIR 49 225 -37 245 270 40 32 chr1 97482954 97483080 -184710584 - MER113 DNA MER1_type? -123 398 272 400 226 12 0 chr1 97483223 97483307 -184710357 + MIR3 SINE MIR 98 182 -26 2212 107 0 20 chr1 97484251 97484581 -184709083 + AluSx SINE Alu 1 312 0 1010 94 56 17 chr1 97485364 97485544 -184708120 + L1MA4 LINE L1 5951 6137 -163 1246 133 28 0 chr1 97485544 97485725 -184707939 + AluSx SINE Alu 1 186 -126 749 140 37 37 chr1 97485725 97485889 -184707775 + L1MA4 LINE L1 6132 6295 -5 766 269 16 0 chr1 97486958 97487140 -184706524 + MIR SINE MIR 13 197 -65 5627 147 24 24 chr1 97487583 97489199 -184704465 + L1PB1 LINE L1 3981 5595 -556 2104 112 24 0 chr1 97489199 97489320 -184704344 + AluSg SINE Alu 1 118 -192 225 65 0 0 chr1 97489320 97489351 -184704313 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2104 112 24 0 chr1 97489351 97489516 -184704148 + AluSg SINE Alu 118 294 -16 5627 147 24 24 chr1 97489516 97490073 -184703591 + L1PB1 LINE L1 5595 6151 0 5131 171 23 5 chr1 97490589 97491648 -184702016 - L1MA5 LINE L1 -2 6298 5215 2248 109 0 10 chr1 97491662 97491973 -184701691 + AluSg SINE Alu 1 308 -2 600 265 180 75 chr1 97492282 97493165 -184700499 - L2 LINE L2 -90 3223 2243 302 309 93 19 chr1 97493745 97493907 -184699757 - MIR SINE MIR -26 236 63 820 116 8 16 chr1 97493908 97494037 -184699627 + AluSx SINE Alu 182 309 0 2469 63 0 0 chr1 97494093 97494394 -184699270 - AluY SINE Alu -10 301 1 2145 103 3 3 chr1 97496918 97497208 -184696456 + AluSx SINE Alu 3 292 -20 2683 81 10 15 chr1 97497249 97497642 -184696022 - L1PA14 LINE L1 0 6161 5771 1153 111 0 0 chr1 97497675 97497828 -184695836 - AluSq SINE Alu -160 153 1 16420 177 26 21 chr1 97497829 97501760 -184691904 - L1PA14 LINE L1 -376 5785 1827 2527 95 27 16 chr1 97501760 97502130 -184691534 - THE1C LTR MaLR -1 374 1 16420 177 26 21 chr1 97502130 97502427 -184691237 - L1PA14 LINE L1 -4334 1827 1533 243 343 94 17 chr1 97502738 97502919 -184690745 - MIR SINE MIR -43 219 25 551 306 44 29 chr1 97503681 97503887 -184689777 + MIR SINE MIR 16 224 -38 341 189 14 0 chr1 97504107 97504181 -184689483 + MER116 DNA Mariner 6 80 0 185 0 0 39 chr1 97505334 97505360 -184688304 + (CA)n Simple_repeat Simple_repeat 2 26 0 420 234 182 13 chr1 97505653 97505807 -184687857 - MER5A DNA MER1_type 0 189 10 2254 113 0 3 chr1 97505836 97506145 -184687519 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr1 97506392 97506414 -184687250 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 97506496 97506536 -184687128 + AT_rich Low_complexity Low_complexity 1 40 0 252 118 118 0 chr1 97506596 97506647 -184687017 - MER106A DNA MER1_type -134 102 46 200 146 0 42 chr1 97506727 97506775 -184686889 + (TATAA)n Simple_repeat Simple_repeat 2 47 0 196 321 49 0 chr1 97508796 97508877 -184684787 + MIR SINE MIR 178 262 0 29 0 0 0 chr1 97509028 97509057 -184684607 + AT_rich Low_complexity Low_complexity 1 29 0 434 295 68 51 chr1 97509505 97509739 -184683925 + L2 LINE L2 3032 3269 -3 514 345 82 5 chr1 97511391 97511597 -184682067 + MIR SINE MIR 10 231 -31 41 66 0 0 chr1 97511624 97511700 -184681964 + AT_rich Low_complexity Low_complexity 1 76 0 222 350 23 45 chr1 97511859 97512036 -184681628 + L2 LINE L2 2816 2988 -325 423 266 48 0 chr1 97512161 97512285 -184681379 + MIR SINE MIR 47 176 -86 394 345 158 33 chr1 97512331 97512869 -184680795 - L2 LINE L2 -85 3228 2622 238 200 146 0 chr1 97513103 97513158 -184680506 + L2 LINE L2 3233 3295 -18 213 248 248 38 chr1 97514580 97514685 -184678979 - L2 LINE L2 -9 3263 3137 255 255 61 31 chr1 97516546 97516644 -184677020 + L2 LINE L2 2391 2491 -823 884 191 63 0 chr1 97517088 97517277 -184676387 + L1MA8 LINE L1 6031 6231 -60 249 262 16 0 chr1 97519007 97519068 -184674596 + MIR SINE MIR 191 252 -10 1934 158 0 3 chr1 97519072 97519369 -184674295 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 97519374 97519396 -184674268 + AT_rich Low_complexity Low_complexity 1 22 0 1592 168 3 72 chr1 97519413 97519746 -184673918 - AluJb SINE Alu -2 310 1 352 248 4 3 chr1 97520592 97520670 -184672994 - MER5A DNA MER1_type -10 179 91 215 179 26 0 chr1 97521497 97521536 -184672128 + MIR SINE MIR 205 244 -18 2384 105 0 3 chr1 97521563 97521905 -184671759 - L1PA13 LINE L1 -3 6160 5820 755 246 18 0 chr1 97525448 97525619 -184668045 - MER45A DNA AcHobo -4 174 1 392 246 102 0 chr1 97526563 97526695 -184666969 + MLT1H LTR MaLR 406 555 0 1540 278 110 9 chr1 97526704 97527270 -184666394 - MLT2E LTR ERVL 0 628 3 880 398 19 0 chr1 97527270 97527581 -184666083 + L1MA8 LINE L1 5867 6228 -63 396 174 0 0 chr1 97527582 97527651 -184666013 + Tigger1 DNA MER2_type 1 69 -2349 326 294 49 0 chr1 97528198 97528300 -184665364 - MER91C DNA MER1_type -33 107 1 486 70 0 0 chr1 97528933 97529004 -184664660 + (TC)n Simple_repeat Simple_repeat 2 72 0 288 0 0 0 chr1 97529004 97529036 -184664628 + (CA)n Simple_repeat Simple_repeat 1 32 0 303 337 84 48 chr1 97529135 97529467 -184664197 + L2 LINE L2 2349 2692 -622 252 306 224 0 chr1 97529486 97529584 -184664080 + L2 LINE L2 3192 3311 -2 367 286 23 88 chr1 97530250 97530421 -184663243 + MER91A DNA MER1_type 5 164 -32 306 323 61 0 chr1 97530481 97530580 -184663084 + L2 LINE L2 2668 2772 -542 412 221 10 10 chr1 97530627 97530731 -184662933 + LTR45B LTR ERV1 24 127 -362 704 185 19 49 chr1 97530829 97530991 -184662673 + LTR45 LTR ERV1 365 521 -4 303 323 96 89 chr1 97531213 97531516 -184662148 + L2 LINE L2 2968 3272 0 544 312 94 23 chr1 97532120 97532386 -184661278 + L2 LINE L2 3028 3312 -1 1030 248 13 48 chr1 97532555 97532866 -184660798 - L1ME3A LINE L1 -62 6108 5809 377 294 59 55 chr1 97533086 97533386 -184660278 - L1ME3A LINE L1 -611 5559 5261 256 220 51 0 chr1 97533453 97533512 -184660152 - L1M4 LINE L1 -710 5464 5403 193 309 41 41 chr1 97534193 97534280 -184659384 + L3b LINE CR1 1384 1473 -110 2291 123 0 7 chr1 97534280 97534590 -184659074 + AluY SINE Alu 2 309 -2 193 309 41 41 chr1 97534590 97534625 -184659039 + L3b LINE CR1 1472 1506 -77 249 273 45 83 chr1 97535034 97535166 -184658498 + MIR SINE MIR 119 245 -17 272 280 119 59 chr1 97535210 97535328 -184658336 - L2 LINE L2 -10 3262 3138 180 0 0 0 chr1 97535328 97535348 -184658316 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2198 146 97 3 chr1 97535727 97536118 -184657546 - MSTA LTR MaLR 0 428 1 7719 170 38 58 chr1 97536123 97536636 -184657028 - MSTA-int LTR MaLR -5 1646 1124 4703 120 4 3 chr1 97536636 97537326 -184656338 + LTR8 LTR ERV1 1 691 0 7719 170 38 58 chr1 97537326 97538023 -184655641 - MSTA-int LTR MaLR -527 1124 477 2021 125 7 16 chr1 97538023 97538326 -184655338 + AluSq SINE Alu 1 300 -13 7719 170 38 58 chr1 97538326 97538792 -184654872 - MSTA-int LTR MaLR -1174 477 3 1870 172 91 18 chr1 97538796 97539192 -184654472 - MSTA LTR MaLR -2 426 2 197 116 0 116 chr1 97539396 97539439 -184654225 - L2 LINE L2 -5 3308 3271 2573 142 22 37 chr1 97539572 97540030 -184653634 + MER4C LTR ERV1 14 464 -1 21762 41 0 1 chr1 97540197 97542890 -184650774 + L1P LINE L1 2246 4936 -1210 357 138 15 0 chr1 97542892 97542957 -184650707 - L1P5 LINE L1 -627 5524 5459 22 88 0 0 chr1 97543204 97543261 -184650403 + AT_rich Low_complexity Low_complexity 1 57 0 1391 156 0 5 chr1 97543513 97543724 -184649940 - AluJb SINE Alu -101 211 2 284 191 189 0 chr1 97543725 97543870 -184649794 - L1MC4a LINE L1 -831 6977 6914 276 59 0 59 chr1 97543879 97543930 -184649734 - L1MB3 LINE L1 -13 6170 6123 1783 143 14 4 chr1 97544081 97544392 -184649272 + AluSx SINE Alu 1 314 0 1928 190 10 13 chr1 97544413 97544807 -184648857 - L1MB5 LINE L1 -57 6117 5725 931 242 38 4 chr1 97544808 97545048 -184648616 - L1M4c LINE L1 -4748 1636 1389 6676 133 10 17 chr1 97545085 97545719 -184647945 - L1MA2 LINE L1 0 6304 5667 2247 83 0 4 chr1 97545719 97545997 -184647667 + AluY SINE Alu 16 292 -19 6676 133 10 17 chr1 97545997 97547069 -184646595 - L1MA2 LINE L1 -637 5667 4612 1782 140 54 57 chr1 97547069 97547495 -184646169 - THE1C LTR MaLR 0 428 1 22587 186 17 31 chr1 97547504 97549873 -184643791 - L1P LINE L1 -1545 4601 2284 336 24 0 0 chr1 97549873 97549914 -184643750 + MADE1 DNA Mariner 2 42 -38 22587 186 17 31 chr1 97549914 97552168 -184641496 - L1P LINE L1 -3862 2284 1 181 286 107 0 chr1 97553138 97553194 -184640470 - MIR SINE MIR -97 111 50 1510 186 0 58 chr1 97554284 97554612 -184639052 + AluJo SINE Alu 1 309 -3 315 0 0 0 chr1 97554673 97554708 -184638956 + (TG)n Simple_repeat Simple_repeat 2 36 0 188 380 73 64 chr1 97555661 97555990 -184637674 + L2 LINE L2 2842 3173 -99 253 111 0 0 chr1 97556148 97556184 -184637480 - L2 LINE L2 -15 3298 3263 182 241 52 0 chr1 97556630 97556688 -184636976 - MIR SINE MIR -53 209 149 570 293 52 24 chr1 97557719 97557968 -184635696 + MIR SINE MIR 5 260 -2 26 30 0 0 chr1 97557968 97558001 -184635663 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr1 97558080 97558111 -184635553 + AT_rich Low_complexity Low_complexity 1 31 0 255 329 51 15 chr1 97559001 97559138 -184634526 - L2 LINE L2 -214 3058 2917 703 292 62 0 chr1 97559139 97559317 -184634347 + MER91B DNA MER1_type 1 189 -1 311 347 196 21 chr1 97559317 97559684 -184633980 - L2 LINE L2 -384 2930 2498 2142 101 0 0 chr1 97561069 97561337 -184632327 + AluSx SINE Alu 1 268 -44 511 250 170 10 chr1 97561486 97561774 -184631890 - L1ME4a LINE L1 -196 5925 5592 23 54 0 0 chr1 97561787 97561824 -184631840 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 97562181 97562206 -184631458 + AT_rich Low_complexity Low_complexity 1 25 0 2149 117 3 0 chr1 97562637 97562972 -184630692 + AluSx SINE Alu 1 336 0 28 0 0 0 chr1 97562975 97563003 -184630661 + AT_rich Low_complexity Low_complexity 1 28 0 1680 192 14 0 chr1 97563015 97563312 -184630352 + AluJb SINE Alu 1 301 -11 2182 108 10 0 chr1 97563716 97564011 -184629653 + AluSq SINE Alu 1 298 -15 287 243 78 21 chr1 97564542 97564652 -184629012 - MIR3 SINE MIR -40 168 81 231 353 29 48 chr1 97564636 97564843 -184628821 + L2 LINE L2 2442 2644 -670 * 338 283 40 30 chr1 97567040 97567139 -184626525 - MIR SINE MIR -162 100 1 510 282 58 26 chr1 97567594 97567750 -184625914 - L2 LINE L2 -1 3271 3111 2285 80 3 13 chr1 97567889 97568200 -184625464 + AluSx SINE Alu 2 309 -3 205 211 0 0 chr1 97569305 97569343 -184624321 - L2 LINE L2 -8 3305 3268 226 393 0 0 chr1 97570060 97570144 -184623520 + MIR3 SINE MIR 82 165 -43 262 30 0 0 chr1 97571049 97571082 -184622582 + L2 LINE L2 3275 3307 -6 219 340 9 38 chr1 97571120 97571143 -184622521 - MIR SINE MIR -125 137 115 2253 100 0 13 chr1 97571143 97571452 -184622212 + AluSc SINE Alu 5 309 0 219 340 9 38 chr1 97571452 97571534 -184622130 - MIR SINE MIR -147 115 35 23 54 0 0 chr1 97571541 97571578 -184622086 + AT_rich Low_complexity Low_complexity 1 37 0 2988 69 5 24 chr1 97571578 97571998 -184621666 - L1MA2 LINE L1 0 6304 5893 21 0 0 0 chr1 97572898 97572919 -184620745 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 97573185 97573207 -184620457 + AT_rich Low_complexity Low_complexity 1 22 0 420 286 29 0 chr1 97573503 97573608 -184620056 + L2 LINE L2 3200 3307 -6 417 278 46 17 chr1 97573976 97574149 -184619515 + L1M4 LINE L1 3740 3917 -2229 315 291 139 19 chr1 97574474 97574632 -184619032 + L1M4 LINE L1 4149 4325 -1821 1947 229 59 84 chr1 97574636 97575261 -184618403 + L1MCa LINE L1 32 640 -5786 1361 118 0 36 chr1 97575261 97575481 -184618183 + L1PA15 LINE L1 5954 6165 0 1947 229 59 84 chr1 97575481 97575548 -184618116 + L1MCa LINE L1 640 707 -5719 38413 84 4 7 chr1 97575552 97581715 -184611949 + L1PA6 LINE L1 11 6154 0 392 164 0 0 chr1 97581712 97581779 -184611885 + L1MCa LINE L1 689 755 -5671 * 15909 155 17 15 chr1 97581892 97586026 -184607638 + L1MA3 LINE L1 3312 7464 -260 9558 25 7 2 chr1 97586026 97587945 -184605719 + L1PA4 LINE L1 4229 6155 0 1285 233 38 59 chr1 97587945 97588422 -184605242 + L1MCb LINE L1 613 1079 -4966 * 7297 172 9 8 chr1 97588416 97589647 -184604017 + L1M1 LINE L1 7 1238 -6327 3275 185 7 4 chr1 97589651 97590213 -184603451 - L1M1 LINE L1 -6995 570 7 990 223 47 53 chr1 97590207 97590548 -184603116 - L1MCb LINE L1 -4966 1079 741 * 6215 145 13 2 chr1 97590540 97591542 -184602122 + L1M1 LINE L1 1238 2250 -5315 722 137 23 0 chr1 97591538 97591669 -184601995 + L1M1 LINE L1 3654 3787 -3778 * 14978 148 16 16 chr1 97591651 97596455 -184597209 + L1MA3 LINE L1 2648 7464 -260 9599 23 5 0 chr1 97596455 97598369 -184595295 + L1PA3 LINE L1 4229 6150 -5 1591 95 21 0 chr1 97598374 97598615 -184595049 + L1MA3 LINE L1 7479 7724 0 768 185 0 0 chr1 97598706 97598825 -184594839 + FLAM_C SINE Alu 1 119 -24 252 0 0 0 chr1 97598825 97598853 -184594811 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1070 157 63 65 chr1 97598855 97599444 -184594220 + L1MCb LINE L1 1076 1855 -4709 1940 96 96 0 chr1 97599444 97599716 -184593948 - AluSx SINE Alu -13 299 2 1070 157 63 65 chr1 97599716 97599832 -184593832 + L1MCb LINE L1 1855 1970 -4594 337 239 11 22 chr1 97599833 97599925 -184593739 + MLT1F LTR MaLR 1 91 -451 366 260 39 24 chr1 97599989 97600116 -184593548 + MLT1F-int LTR MaLR 1243 1371 0 2138 238 35 28 chr1 97600116 97600654 -184593010 + MLT1F LTR MaLR 1 542 0 328 331 141 23 chr1 97600729 97601034 -184592630 + L1M3 LINE L1 4696 5036 -1110 258 269 67 61 chr1 97601038 97601487 -184592177 + L1M3 LINE L1 5010 5463 -801 5001 203 38 26 chr1 97601492 97602162 -184591502 + L1 LINE L1 3371 4065 -2081 2315 77 3 77 chr1 97602162 97602500 -184591164 + AluSq SINE Alu 1 313 0 5001 203 38 26 chr1 97602500 97603110 -184590554 + L1 LINE L1 4065 4666 -1480 34508 26 0 0 chr1 97603430 97608514 -184585150 - L1HS LINE L1 0 6155 1072 19212 152 39 9 chr1 97609014 97612445 -184581219 - L1M1 LINE L1 -3940 3625 84 1765 145 57 11 chr1 97612445 97612727 -184580937 + AluSx SINE Alu 1 295 -17 19212 152 39 9 chr1 97612727 97612792 -184580872 - L1M1 LINE L1 -7481 84 22 280 122 0 0 chr1 97612793 97612842 -184580822 - L1M4c LINE L1 -5002 1382 1334 381 211 0 0 chr1 97612846 97612922 -184580742 + L1ME LINE L1 5565 5640 -530 341 288 25 6 chr1 97613056 97613219 -184580445 + L1ME LINE L1 5620 5785 -377 785 195 117 12 chr1 97613220 97613476 -184580188 + L1M4 LINE L1 4376 4658 -1488 27557 73 15 5 chr1 97613501 97617374 -184576290 - L1P LINE L1 -2224 3922 13 2261 103 0 17 chr1 97617647 97617948 -184575716 - AluSg SINE Alu -14 296 1 615 271 80 49 chr1 97618127 97618352 -184575312 - L2 LINE L2 -968 2346 2115 247 354 96 52 chr1 97618642 97619149 -184574515 - L2 LINE L2 0 3272 2752 236 367 50 8 chr1 97619249 97619369 -184574295 - L2 LINE L2 -256 3057 2933 319 123 228 70 chr1 97619480 97619594 -184574070 - Zaphod DNA AcHobo -1 4030 3899 1869 147 67 28 chr1 97619757 97620118 -184573546 - THE1C LTR MaLR 0 375 1 1367 167 20 13 chr1 97620495 97620801 -184572863 - L1MA4 LINE L1 -5 6295 5988 23 68 0 0 chr1 97620919 97620963 -184572701 + AT_rich Low_complexity Low_complexity 1 44 0 429 20 0 0 chr1 97621009 97621059 -184572605 + (TG)n Simple_repeat Simple_repeat 1 50 0 479 259 149 59 chr1 97622374 97622663 -184571001 + L2 LINE L2 1541 1855 -1459 1359 321 89 14 chr1 97622685 97623388 -184570276 + L2 LINE L2 2304 3053 -260 373 267 95 0 chr1 97623388 97623504 -184570160 + L2 LINE L2 3175 3301 -12 2572 267 79 53 chr1 97623642 97624407 -184569257 + L1 LINE L1 1 808 -5333 5183 83 18 0 chr1 97624407 97625116 -184568548 + LTR30 LTR ERV1 1 722 0 2572 267 79 53 chr1 97625116 97625527 -184568137 + L1 LINE L1 808 1207 -4934 4230 179 61 9 chr1 97625529 97626477 -184567187 + L1PBa LINE L1 6 1002 -5861 2452 185 4 0 chr1 97626482 97626963 -184566701 + L1 LINE L1 3696 4178 -2032 424 206 26 58 chr1 97627356 97627511 -184566153 - L1MC5 LINE L1 -212 7749 7600 277 366 46 8 chr1 97627538 97627669 -184565995 + L2 LINE L2 2699 2834 -480 704 163 74 15 chr1 97628227 97628362 -184565302 + AluJb SINE Alu 1 143 -169 625 149 0 0 chr1 97628361 97628455 -184565209 + AluSg/x SINE Alu 202 295 -14 * 544 332 88 56 chr1 97628456 97628826 -184564838 + L2 LINE L2 2360 2716 -556 972 207 87 57 chr1 97628826 97629160 -184564504 - MER2 DNA MER2_type 0 344 1 544 332 88 56 chr1 97629160 97629660 -184564004 + L2 LINE L2 2716 3272 0 197 295 0 16 chr1 97629655 97629716 -184563948 + MIR SINE MIR 185 244 -18 * 324 227 0 34 chr1 97630119 97630207 -184563457 - MIR SINE MIR 0 262 178 24 32 0 0 chr1 97630355 97630386 -184563278 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 97630413 97630439 -184563225 + AT_rich Low_complexity Low_complexity 1 26 0 1599 56 0 0 chr1 97630439 97630637 -184563027 - L1PA5 LINE L1 -2 6152 5955 595 295 40 44 chr1 97630748 97630999 -184562665 + MIR SINE MIR 7 256 -6 187 318 143 8 chr1 97631369 97631495 -184562169 + L2 LINE L2 2595 2737 -577 23 54 0 0 chr1 97631643 97631680 -184561984 + AT_rich Low_complexity Low_complexity 1 37 0 2362 68 45 0 chr1 97632105 97632397 -184561267 - AluSp SINE Alu -8 305 1 322 279 49 0 chr1 97632399 97632521 -184561143 - L1ME LINE L1 -334 5828 5701 27224 57 3 0 chr1 97632526 97636131 -184557533 + L1P LINE L1 2 3617 -2529 * 38294 45 0 3 chr1 97636128 97641075 -184552589 + L1P LINE L1 1 4936 -1210 5260 193 13 2 chr1 97641077 97642390 -184551274 - L1P5 LINE L1 -627 5524 4204 38156 34 29 1 chr1 97642510 97647183 -184546481 - L1P LINE L1 -1345 4801 2 352 279 49 0 chr1 97647188 97647310 -184546354 + L1ME3 LINE L1 5701 5828 -334 2367 62 45 0 chr1 97647312 97647604 -184546060 + AluSp SINE Alu 1 305 -8 23 54 0 0 chr1 97648029 97648066 -184545598 + AT_rich Low_complexity Low_complexity 1 37 0 193 318 143 8 chr1 97648214 97648340 -184545324 - L2 LINE L2 -577 2737 2595 598 295 40 44 chr1 97648710 97648961 -184544703 - MIR SINE MIR -6 256 7 1592 56 0 0 chr1 97649072 97649270 -184544394 + L1PA5 LINE L1 5955 6152 -2 26 0 0 0 chr1 97649270 97649296 -184544368 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr1 97649323 97649354 -184544310 + AT_rich Low_complexity Low_complexity 1 31 0 333 227 0 34 chr1 97649502 97649590 -184544074 + MIR SINE MIR 178 262 0 24 32 0 0 chr1 97649590 97649621 -184544043 + AT_rich Low_complexity Low_complexity 1 31 0 195 295 0 16 chr1 97649993 97650054 -184543610 - MIR SINE MIR -18 244 185 * 535 332 88 56 chr1 97650049 97650549 -184543115 - L2 LINE L2 0 3272 2716 994 207 87 57 chr1 97650549 97650883 -184542781 + MER2 DNA MER2_type 1 344 0 535 332 88 56 chr1 97650883 97651253 -184542411 - L2 LINE L2 -556 2716 2360 620 149 0 0 chr1 97651254 97651348 -184542316 - AluSg/x SINE Alu -14 295 202 * 696 163 74 15 chr1 97651347 97651482 -184542182 - AluJb SINE Alu -169 143 1 278 366 46 8 chr1 97652040 97652171 -184541493 - L2 LINE L2 -480 2834 2699 456 206 26 58 chr1 97652198 97652353 -184541311 + L1MC5 LINE L1 7600 7749 -212 527 300 65 119 chr1 97652357 97652969 -184540695 - L2 LINE L2 -1073 2241 1683 2449 70 0 3 chr1 97652969 97653269 -184540395 + AluY SINE Alu 1 299 -12 527 300 65 119 chr1 97653269 97653480 -184540184 - L2 LINE L2 -1631 1683 1462 258 145 29 29 chr1 97653805 97653874 -184539790 + (TA)n Simple_repeat Simple_repeat 1 69 0 648 268 87 55 chr1 97653935 97654560 -184539104 - L1MEd LINE L1 -836 1654 930 3786 109 25 7 chr1 97654611 97655159 -184538505 - LTR9B LTR ERV1 -86 558 1 12698 104 38 6 chr1 97655162 97656946 -184536718 - HUERS-P3b LTR ERV1 -6 7412 5572 261 341 0 0 chr1 97657052 97657137 -184536527 + L2 LINE L2 2221 2305 -1009 758 285 105 14 chr1 97658340 97658779 -184534885 - L1ME4a LINE L1 -159 5962 5484 368 248 127 43 chr1 97658800 97659099 -184534565 + HAL1b LINE L1 788 1111 -237 304 235 31 10 chr1 97659178 97659276 -184534388 + HAL1b LINE L1 1243 1342 -6 314 288 150 31 chr1 97659415 97659641 -184534023 - L1MC4a LINE L1 -1726 6082 5830 314 286 0 13 chr1 97659651 97659728 -184533936 + MER45B DNA AcHobo 203 278 -762 1450 158 65 25 chr1 97659757 97660036 -184533628 + MER45B DNA AcHobo 496 785 -255 5533 82 9 3 chr1 97660045 97660798 -184532866 - L1PB1 LINE L1 0 6151 5394 1328 135 43 57 chr1 97660798 97660835 -184532829 + MER45B DNA AcHobo 764 800 -781 2060 108 25 0 chr1 97660835 97661113 -184532551 + AluSg SINE Alu 1 285 -25 594 0 0 0 chr1 97661113 97661179 -184532485 + (CATAA)n Simple_repeat Simple_repeat 2 67 0 1328 135 43 57 chr1 97661179 97661421 -184532243 + MER45B DNA AcHobo 798 1040 0 410 169 13 13 chr1 97661493 97661570 -184532094 + MLT1L LTR MaLR 3 79 -536 282 132 0 0 chr1 97661657 97661710 -184531954 + (TA)n Simple_repeat Simple_repeat 1 53 0 343 268 40 45 chr1 97661912 97662161 -184531503 + MLT1J LTR MaLR 220 511 0 642 257 44 155 chr1 97662161 97662398 -184531266 + L1MEd LINE L1 28 290 -5829 2941 139 27 9 chr1 97662398 97662923 -184530741 + L1MA8 LINE L1 5748 6281 -10 2286 87 21 0 chr1 97662931 97663218 -184530446 - AluSq SINE Alu -20 293 1 642 257 44 155 chr1 97663218 97663628 -184530036 + L1MEd LINE L1 297 611 -5508 420 223 73 16 chr1 97663921 97664154 -184529510 + L1MC4 LINE L1 7583 7995 0 22 0 0 0 chr1 97664509 97664531 -184529133 + AT_rich Low_complexity Low_complexity 1 22 0 611 200 166 14 chr1 97664637 97664782 -184528882 + MER5B DNA MER1_type 4 170 -8 2186 110 3 3 chr1 97664953 97665245 -184528419 + AluSx SINE Alu 1 292 -20 262 254 79 0 chr1 97666196 97666259 -184527405 + L2 LINE L2 3244 3311 -2 22 35 0 0 chr1 97666553 97666582 -184527082 + GC_rich Low_complexity Low_complexity 1 29 0 323 291 142 7 chr1 97668136 97668277 -184525387 - MIR SINE MIR -34 228 69 255 313 0 0 chr1 97668347 97668411 -184525253 - MIR3 SINE MIR -6 202 139 628 287 145 49 chr1 97669052 97669590 -184524074 - L2 LINE L2 -15 3298 2436 413 184 78 147 chr1 97669647 97669716 -184523948 + L1MC5 LINE L1 7713 7785 -176 2170 108 10 0 chr1 97669716 97670012 -184523652 - AluSq SINE Alu -9 304 6 413 184 78 147 chr1 97670012 97670187 -184523477 + L1MC5 LINE L1 7785 7940 -21 29 47 0 0 chr1 97671059 97671102 -184522562 + AT_rich Low_complexity Low_complexity 1 43 0 210 277 62 15 chr1 97671506 97671571 -184522093 - L2 LINE L2 -51 3221 3154 2358 91 0 0 chr1 97672338 97672636 -184521028 - AluSx SINE Alu -14 298 1 825 206 17 28 chr1 97672959 97673139 -184520525 + MER5B DNA MER1_type 1 178 0 23 54 0 0 chr1 97673965 97674002 -184519662 + AT_rich Low_complexity Low_complexity 1 37 0 32 57 0 0 chr1 97674170 97674223 -184519441 + AT_rich Low_complexity Low_complexity 1 53 0 222 268 241 0 chr1 97674471 97674583 -184519081 + MIR SINE MIR 3 141 -121 200 125 0 25 chr1 97675188 97675228 -184518436 + (TTTTA)n Simple_repeat Simple_repeat 4 42 0 274 143 0 0 chr1 97675233 97675275 -184518389 - AluJb SINE Alu -20 282 241 1084 143 0 11 chr1 97675278 97675453 -184518211 - AluJb SINE Alu -139 173 1 196 288 62 55 chr1 97675623 97675769 -184517895 + L2 LINE L2 2964 3110 -203 731 251 56 10 chr1 97675886 97676081 -184517583 + L2 LINE L2 3109 3312 -1 386 340 84 9 chr1 97677257 97677472 -184516192 - MIR SINE MIR -25 237 7 2015 113 0 34 chr1 97678324 97678654 -184515010 - AluSg SINE Alu 0 320 1 213 333 14 0 chr1 97678792 97678861 -184514803 - MIR SINE MIR -108 100 31 791 172 7 7 chr1 97679068 97679213 -184514451 + L1PA16 LINE L1 6019 6163 -3 2101 116 0 7 chr1 97679453 97679793 -184513871 - AluSx SINE Alu 0 312 1 2074 132 0 20 chr1 97680114 97680417 -184513247 - AluSx SINE Alu -15 297 1 28 0 0 0 chr1 97681335 97681363 -184512301 + AT_rich Low_complexity Low_complexity 1 28 0 36 77 0 0 chr1 97681377 97681455 -184512209 + AT_rich Low_complexity Low_complexity 1 78 0 2425 86 0 3 chr1 97681785 97682089 -184511575 + AluY SINE Alu 1 303 -8 227 195 171 0 chr1 97682450 97682532 -184511132 + L1ME4a LINE L1 5991 6086 -35 221 231 83 56 chr1 97683026 97683134 -184510530 - L2 LINE L2 -2 3311 3201 450 233 156 22 chr1 97683343 97683523 -184510141 - MIR SINE MIR -56 206 3 1479 102 107 20 chr1 97683838 97684082 -184509582 + MER2 DNA MER2_type 1 265 -80 717 155 14 35 chr1 97684082 97684224 -184509440 - FLAM_A SINE Alu -3 139 1 543 132 11 44 chr1 97684228 97684319 -184509345 + MER2 DNA MER2_type 258 345 0 2221 95 0 7 chr1 97685301 97685618 -184508046 + AluSx SINE Alu 1 315 0 646 246 97 17 chr1 97685933 97686108 -184507556 - MER20 DNA MER1_type -9 210 22 24 0 0 0 chr1 97686181 97686205 -184507459 + AT_rich Low_complexity Low_complexity 1 24 0 1866 152 3 7 chr1 97686662 97686965 -184506699 + AluJb SINE Alu 1 302 -10 454 122 47 0 chr1 97686965 97687072 -184506592 + (TA)n Simple_repeat Simple_repeat 1 112 0 228 284 15 0 chr1 97687363 97687430 -184506234 + MARNA DNA Mariner 466 533 -53 32 43 0 0 chr1 97687460 97687506 -184506158 + AT_rich Low_complexity Low_complexity 1 46 0 188 352 111 9 chr1 97689146 97689254 -184504410 - L2 LINE L2 -18 3295 3177 1080 168 123 0 chr1 97689490 97689693 -184503971 + MER46A DNA MER2_type 1 228 -8 356 291 10 0 chr1 97691805 97691908 -184501756 - MIR3 SINE MIR -3 205 102 22 56 0 0 chr1 97692481 97692517 -184501147 + AT_rich Low_complexity Low_complexity 1 36 0 2167 101 0 7 chr1 97692576 97692873 -184500791 - AluSq SINE Alu -18 295 1 1920 129 56 0 chr1 97693869 97694156 -184499508 + AluSq SINE Alu 1 303 -10 490 196 84 0 chr1 97695851 97695958 -184497706 - MER63 DNA MER1_type -277 785 44 542 311 60 68 chr1 97697739 97698332 -184495332 - L2 LINE L2 -2 3311 2718 505 209 47 47 chr1 97699076 97699224 -184494440 - MIR SINE MIR 0 262 115 5616 247 148 57 chr1 97699692 97700309 -184493355 - L2 LINE L2 -46 3267 2708 2234 71 0 0 chr1 97700309 97700620 -184493044 - AluY SINE Alu 0 327 17 5616 247 148 57 chr1 97700620 97700710 -184492954 - L2 LINE L2 -605 2708 2628 2008 129 0 4 chr1 97700710 97701011 -184492653 - AluSq SINE Alu 0 304 5 5616 247 148 57 chr1 97701011 97701934 -184491730 - L2 LINE L2 -685 2628 1791 1855 156 3 20 chr1 97701934 97702235 -184491429 + AluSq SINE Alu 1 296 -17 5616 247 148 57 chr1 97702235 97703335 -184490329 - L2 LINE L2 -1522 1791 261 26 82 0 0 chr1 97704626 97704687 -184488977 + AT_rich Low_complexity Low_complexity 1 61 0 2008 141 0 7 chr1 97704748 97705038 -184488626 + AluJb SINE Alu 1 288 -24 24 0 0 0 chr1 97705699 97705723 -184487941 + AT_rich Low_complexity Low_complexity 1 24 0 566 268 88 75 chr1 97706378 97706617 -184487047 - L2 LINE L2 0 3272 3031 475 276 68 59 chr1 97707205 97707426 -184486238 + MIR SINE MIR 34 256 -6 2196 115 3 3 chr1 97708658 97708954 -184484710 + AluSx SINE Alu 1 296 -16 361 216 0 14 chr1 97708970 97709044 -184484620 + MER5A DNA MER1_type 1 73 -116 231 270 48 0 chr1 97709105 97709168 -184484496 - L3 LINE CR1 -289 1288 1223 532 266 39 7 chr1 97709209 97709363 -184484301 + L2 LINE L2 3154 3312 -1 * 559 228 49 0 chr1 97709361 97709484 -184484180 + MER5A DNA MER1_type 61 189 0 1027 220 152 31 chr1 97709946 97710433 -184483231 - L1ME4a LINE L1 -65 6056 5511 276 248 83 50 chr1 97710807 97710928 -184482736 + MIR SINE MIR 63 187 -75 188 314 14 14 chr1 97711959 97712029 -184481635 + L2 LINE L2 3000 3069 -203 231 235 49 25 chr1 97712517 97712598 -184481066 + CT-rich Low_complexity Low_complexity 2 84 0 407 293 89 13 chr1 97713902 97714059 -184479605 + MIR SINE MIR 7 175 -87 792 190 86 0 chr1 97714061 97714224 -184479440 + MER5A DNA MER1_type 11 187 -2 263 341 11 0 chr1 97714226 97714314 -184479350 + MIR SINE MIR 174 262 0 417 271 8 42 chr1 97715020 97715138 -184478526 + MIR3 SINE MIR 81 194 -14 258 306 222 6 chr1 97715484 97715664 -184478000 - MIR SINE MIR -34 228 10 388 169 55 16 chr1 97715934 97716017 -184477647 + MER5A DNA MER1_type 93 188 -1 409 296 62 43 chr1 97716438 97716600 -184477064 - MIR SINE MIR -12 250 86 2411 74 0 0 chr1 97717416 97717727 -184475937 + AluY SINE Alu 1 311 0 544 268 141 27 chr1 97717944 97718164 -184475500 - MIR SINE MIR 0 262 18 698 283 117 0 chr1 97718772 97718995 -184474669 - MIR SINE MIR 0 262 14 237 229 143 0 chr1 97719356 97719426 -184474238 + MIR SINE MIR 150 229 -33 277 403 37 44 chr1 97720989 97721262 -184472402 + L2 LINE L2 2997 3267 -5 619 222 31 19 chr1 97721446 97721608 -184472056 - MLT1G1 LTR MaLR -6 561 398 778 222 97 34 chr1 97721663 97721799 -184471865 - MLT1G1 LTR MaLR -300 290 164 2767 180 2 0 chr1 97721799 97721831 -184471833 - L1MB2 LINE L1 -2 6169 6139 2253 110 3 0 chr1 97721831 97722131 -184471533 + AluSx SINE Alu 3 303 -9 2767 180 2 0 chr1 97722131 97722604 -184471060 - L1MB2 LINE L1 -32 6139 5663 778 222 97 34 chr1 97722604 97722798 -184470866 - MLT1G1 LTR MaLR -426 164 3 804 234 98 16 chr1 97722929 97723173 -184470491 + L2 LINE L2 3050 3313 0 372 290 65 47 chr1 97723381 97723550 -184470114 - MIR3 SINE MIR 0 208 37 620 283 82 30 chr1 97723764 97724128 -184469536 + LTR16C LTR ERVL 107 489 -2 483 256 6 29 chr1 97724285 97724457 -184469207 + MER104 DNA Tc2 1 168 -12 2519 69 0 0 chr1 97725300 97725605 -184468059 - AluY SINE Alu -5 306 2 326 206 76 43 chr1 97725663 97725755 -184467909 + MER119 DNA MER1_type 40 134 -449 * 522 185 62 23 chr1 97725744 97725874 -184467790 + MER119 DNA MER1_type 448 582 -1 1829 166 0 31 chr1 97725882 97726202 -184467462 - AluJo SINE Alu 0 312 3 592 217 45 32 chr1 97726662 97726819 -184466845 + L2 LINE L2 3152 3310 -3 881 189 38 0 chr1 97726819 97727004 -184466660 + MER105 DNA DNA 12 203 -1 5369 152 31 13 chr1 97727611 97729049 -184464615 - L1PA16 LINE L1 -9 6157 4708 457 207 69 75 chr1 97729092 97729266 -184464398 - MLT1L LTR MaLR -413 202 30 180 351 130 5 chr1 97729526 97729711 -184463953 - L2 LINE L2 -101 3212 3005 2021 206 76 6 chr1 97729799 97730271 -184463393 - MLT1D LTR MaLR 0 505 1 1376 280 17 15 chr1 97730544 97730947 -184462717 - MLT1I LTR MaLR -4 405 2 525 257 0 0 chr1 97731060 97731169 -184462495 + FLAM_A SINE Alu 2 110 -32 473 172 7 7 chr1 97731169 97731320 -184462344 + GA-rich Low_complexity Low_complexity 1 151 0 389 158 13 0 chr1 97731429 97731505 -184462159 + MER112 DNA MER1_type 8 84 -176 291 83 83 0 chr1 97731585 97731633 -184462031 - MLT2B3 LTR ERVL 0 554 503 479 141 11 0 chr1 97731633 97731725 -184461939 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 2675 146 51 30 chr1 97731727 97732199 -184461465 - MLT2B3 LTR ERVL -39 515 34 398 360 34 7 chr1 97732485 97732632 -184461032 - L2 LINE L2 -1 3271 3121 792 174 71 11 chr1 97733288 97733472 -184460192 - Charlie2a DNA MER1_type -1199 1663 1469 510 83 0 0 chr1 97733515 97733587 -184460077 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 582 257 151 15 chr1 97733695 97733967 -184459697 - Charlie2a DNA MER1_type -2473 309 1 1420 97 27 66 chr1 97734253 97734512 -184459152 - L1MA4 LINE L1 -5 6295 6047 194 179 0 51 chr1 97734952 97734991 -184458673 - L2 LINE L2 -81 3191 3155 227 352 62 47 chr1 97737231 97737359 -184456305 + MIR SINE MIR 20 149 -59 244 314 57 19 chr1 97737722 97737827 -184455837 + L2 LINE L2 3183 3291 -22 258 323 149 19 chr1 97737901 97738062 -184455602 + MIR SINE MIR 10 191 -71 1633 205 33 0 chr1 97738577 97738879 -184454785 - AluJb SINE Alu 0 312 1 1270 113 0 0 chr1 97738921 97739081 -184454583 + AluSg/x SINE Alu 138 297 -15 474 279 144 67 chr1 97739099 97739250 -184454414 - L3 LINE CR1 -522 1055 917 2192 130 13 0 chr1 97739250 97739550 -184454114 - AluSx SINE Alu -8 304 1 474 279 144 67 chr1 97739550 97739774 -184453890 - L3 LINE CR1 -660 917 651 213 313 0 60 chr1 97739894 97739977 -184453687 + L2 LINE L2 3147 3224 -48 298 352 41 14 chr1 97740918 97741062 -184452602 - MIR SINE MIR -65 143 2 264 260 52 13 chr1 97741062 97741138 -184452526 - L2 LINE L2 -5 3267 3189 530 275 135 15 chr1 97741202 97741402 -184452262 + MIR SINE MIR 5 228 -34 253 282 29 29 chr1 97741880 97741983 -184451681 + MIR SINE MIR 64 166 -96 491 273 74 0 chr1 97742014 97742135 -184451529 + MIR SINE MIR 44 173 -89 732 264 125 61 chr1 97742147 97742708 -184450956 - L1MC4 LINE L1 0 8042 7446 679 301 68 52 chr1 97742708 97743131 -184450533 + L1MB2 LINE L1 173 746 -5557 1963 111 7 52 chr1 97743225 97743532 -184450132 + AluSq SINE Alu 1 293 -20 2972 207 70 34 chr1 97743593 97743780 -184449884 + L1MB2 LINE L1 803 982 -5333 306 0 0 0 chr1 97743780 97743814 -184449850 + (CA)n Simple_repeat Simple_repeat 2 35 0 2972 207 70 34 chr1 97743814 97744530 -184449134 + L1MB2 LINE L1 982 1612 -4703 1619 166 19 45 chr1 97744530 97744843 -184448821 + AluJb SINE Alu 1 305 -7 2972 207 70 34 chr1 97744843 97745039 -184448625 + L1MB2 LINE L1 1612 1799 -4516 4449 225 30 83 chr1 97745066 97745337 -184448327 + L1MB2 LINE L1 2551 2835 -3547 2277 71 21 0 chr1 97745337 97745617 -184448047 + AluY SINE Alu 17 302 -9 4449 225 30 83 chr1 97745617 97746651 -184447013 + L1MB2 LINE L1 2835 3842 -2540 483 123 0 25 chr1 97746651 97746732 -184446932 - AluSc SINE Alu -3 306 228 4449 225 30 83 chr1 97746732 97746950 -184446714 + L1MB2 LINE L1 3842 4070 -2312 5100 186 11 67 chr1 97747577 97748794 -184444870 + L1MB2 LINE L1 4057 5205 -1177 1403 99 31 0 chr1 97748794 97748985 -184444679 + MSTB LTR MaLR 1 197 -229 1170 84 0 0 chr1 97748985 97749128 -184444536 + AluY SINE Alu 156 298 -13 1313 144 48 22 chr1 97749132 97749361 -184444303 + MSTB LTR MaLR 192 426 0 4867 191 17 10 chr1 97749363 97750558 -184443106 + L1MB2 LINE L1 5203 6407 0 298 301 36 0 chr1 97750555 97750638 -184443026 - L1MC4 LINE L1 -576 7466 7381 * 510 176 51 11 chr1 97751534 97751666 -184441998 + MIR SINE MIR 76 212 -50 1551 162 4 8 chr1 97751746 97751999 -184441665 - AluJb SINE Alu -47 265 14 2260 95 26 3 chr1 97752552 97752857 -184440807 + AluSx SINE Alu 1 312 0 957 155 107 19 chr1 97752953 97753159 -184440505 + L1ME1 LINE L1 5126 5349 -797 293 214 0 12 chr1 97753161 97753245 -184440419 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 1875 206 27 50 chr1 97753252 97753500 -184440164 + L1ME1 LINE L1 5357 5592 -574 1917 164 0 0 chr1 97753500 97753792 -184439872 + AluSx SINE Alu 1 292 -20 1875 206 27 50 chr1 97753792 97753985 -184439679 + L1ME1 LINE L1 5592 5788 -378 317 250 0 0 chr1 97754017 97754093 -184439571 + L1MA10 LINE L1 6240 6315 -19 * 788 168 143 93 chr1 97754085 97754365 -184439299 + L1ME1 LINE L1 5778 6071 -95 960 179 17 6 chr1 97754385 97754564 -184439100 - L1MC1 LINE L1 0 6333 6153 564 185 0 42 chr1 97754564 97754678 -184438986 + L1MA10 LINE L1 6219 6332 -2 279 53 70 18 chr1 97755874 97755931 -184437733 + CT-rich Low_complexity Low_complexity 3 62 0 1971 119 3 14 chr1 97755993 97756310 -184437354 + AluSq SINE Alu 1 314 0 2045 117 7 0 chr1 97756322 97756604 -184437060 + AluSq SINE Alu 1 284 -29 1994 118 14 0 chr1 97757024 97757312 -184436352 + AluSx SINE Alu 1 292 -20 955 235 96 48 chr1 97757327 97757766 -184435898 + LTR37B LTR ERV1 9 468 0 1377 236 36 12 chr1 97757827 97758157 -184435507 - LTR16C LTR ERVL 0 491 154 2306 99 7 0 chr1 97758401 97758694 -184434970 - AluSp SINE Alu -18 295 1 2102 114 0 3 chr1 97759076 97759365 -184434299 + AluSq SINE Alu 1 288 -25 482 44 113 0 chr1 97759365 97759574 -184434090 + (TA)n Simple_repeat Simple_repeat 1 232 0 517 69 44 66 chr1 97759576 97759943 -184433721 + (TATAA)n Simple_repeat Simple_repeat 1 358 0 372 69 106 6 chr1 97759919 97760079 -184433585 + (TA)n Simple_repeat Simple_repeat 2 177 0 * 2387 87 0 0 chr1 97760107 97760406 -184433258 + AluSc SINE Alu 1 299 -10 1010 111 111 0 chr1 97760406 97760550 -184433114 + AluSg/x SINE Alu 134 293 -19 710 108 144 18 chr1 97760585 97760696 -184432968 + AluSg/x SINE Alu 174 298 -12 207 267 0 0 chr1 97761438 97761513 -184432151 + CT-rich Low_complexity Low_complexity 2 76 0 321 335 102 51 chr1 97761831 97762307 -184431357 + L2 LINE L2 2552 3081 -191 353 298 65 16 chr1 97762852 97762976 -184430688 + L2 LINE L2 3179 3308 -5 539 199 87 181 chr1 97762980 97763068 -184430596 - MIR SINE MIR -4 258 163 2215 99 0 3 chr1 97763068 97763361 -184430303 - AluSg1 SINE Alu -16 293 2 539 199 87 181 chr1 97763361 97763538 -184430126 - MIR SINE MIR -99 163 18 4731 103 178 0 chr1 97763689 97764390 -184429274 - LTR12 LTR ERV1 0 826 1 5008 83 0 2 chr1 97764393 97765034 -184428630 - HERV9 LTR ERV1 -4 8395 7756 2342 177 132 56 chr1 97765028 97765847 -184427817 - Harlequin LTR ERV1 -5176 1720 840 * 24737 78 3 3 chr1 97765840 97769003 -184424661 - Harlequin LTR ERV1 -3445 4954 1792 2759 92 128 130 chr1 97769003 97769854 -184423810 + pTR5 LTR ERV1 1 714 0 * 3356 103 0 21 chr1 97769854 97770330 -184423334 - Harlequin LTR ERV1 -6954 1445 980 276 207 0 35 chr1 97770435 97770493 -184423171 + MLT1A1 LTR MaLR 310 365 0 404 263 0 102 chr1 97770856 97770993 -184422671 - L2 LINE L2 -27 3286 3164 2244 124 0 0 chr1 97771039 97771346 -184422318 + AluSg SINE Alu 1 307 -3 1026 184 0 24 chr1 97771358 97771526 -184422138 + FRAM SINE Alu 1 164 -2 2276 106 0 13 chr1 97771529 97771841 -184421823 + AluSg SINE Alu 1 308 -2 217 151 38 0 chr1 97771896 97771949 -184421715 + CT-rich Low_complexity Low_complexity 4 58 0 2208 119 10 7 chr1 97772066 97772376 -184421288 + AluSx SINE Alu 1 311 -1 2757 201 50 34 chr1 97772408 97773172 -184420492 + L1MC4 LINE L1 6441 7280 -608 2415 161 89 40 chr1 97773181 97773654 -184420010 + MLT1D LTR MaLR 9 504 -1 846 188 73 153 chr1 97773655 97774118 -184419546 + L1MC4 LINE L1 7304 7729 -313 329 220 53 0 chr1 97774119 97774203 -184419461 + L1MC4 LINE L1 7688 8042 0 2582 47 0 7 chr1 97774893 97775194 -184418470 + AluY SINE Alu 1 299 -12 201 257 300 0 chr1 97775223 97775293 -184418371 + MIR SINE MIR 117 207 -55 304 140 0 0 chr1 97775293 97775343 -184418321 - Alu SINE Alu 0 302 253 191 242 0 91 chr1 97775344 97775410 -184418254 + MIR SINE MIR 203 262 0 * 292 338 70 0 chr1 97775400 97775557 -184418107 - MIR SINE MIR -3 259 92 257 235 184 41 chr1 97775554 97775652 -184418012 - L2 LINE L2 -17 3255 3144 * 221 306 28 14 chr1 97775649 97775721 -184417943 - MIR SINE MIR -170 92 20 * 2269 101 0 0 chr1 97775755 97776042 -184417622 + AluSc SINE Alu 1 287 -22 272 289 237 11 chr1 97776045 97776235 -184417429 - MIR SINE MIR -10 252 20 2255 103 3 3 chr1 97776408 97776710 -184416954 - AluSp SINE Alu -11 302 1 313 188 142 114 chr1 97776734 97776910 -184416754 - MLT1K LTR MaLR -32 556 376 451 198 22 0 chr1 97776951 97777042 -184416622 - MLT1K LTR MaLR -304 284 192 31 44 0 0 chr1 97777462 97777507 -184416157 + AT_rich Low_complexity Low_complexity 1 45 0 330 279 131 16 chr1 97777863 97777985 -184415679 + L2 LINE L2 3137 3272 0 284 259 136 0 chr1 97778306 97778387 -184415277 - LTR33 LTR ERVL -5 516 425 2526 86 0 0 chr1 97778407 97778720 -184414944 - AluSq SINE Alu 0 313 1 587 285 81 10 chr1 97778749 97779095 -184414569 - LTR33 LTR ERVL -111 410 9 2145 87 42 7 chr1 97779198 97779485 -184414179 + AluY SINE Alu 1 297 -14 2332 102 0 0 chr1 97779530 97779835 -184413829 + AluSc SINE Alu 1 305 -4 587 243 7 46 chr1 97779926 97780078 -184413586 - MIR3 SINE MIR -39 169 24 526 256 140 24 chr1 97780168 97780375 -184413289 + MIR SINE MIR 32 262 0 983 271 89 16 chr1 97780526 97780891 -184412773 + MLT1K LTR MaLR 70 461 -127 928 221 0 31 chr1 97780891 97781086 -184412578 - MER58A DNA MER1_type 0 224 36 434 256 8 8 chr1 97781109 97781226 -184412438 + MLT1K LTR MaLR 464 580 -8 2259 113 0 0 chr1 97781330 97781630 -184412034 + AluSq SINE Alu 1 300 -13 207 298 0 0 chr1 97782426 97782483 -184411181 - L2 LINE L2 -301 2971 2915 908 100 31 23 chr1 97782508 97782638 -184411026 + FLAM_C SINE Alu 1 131 -2 32 57 0 0 chr1 97782646 97782699 -184410965 + AT_rich Low_complexity Low_complexity 1 53 0 2359 62 0 17 chr1 97782707 97782842 -184410822 + AluY SINE Alu 1 137 -169 2447 67 0 3 chr1 97782842 97783140 -184410524 + AluY SINE Alu 1 297 -14 2359 62 0 17 chr1 97783140 97783315 -184410349 + AluY SINE Alu 137 306 0 493 314 8 0 chr1 97783315 97783439 -184410225 - L2 LINE L2 -9 3263 3139 243 0 0 0 chr1 97783738 97783765 -184409899 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2307 79 3 0 chr1 97783765 97784050 -184409614 - AluSp SINE Alu -27 286 1 5225 105 18 65 chr1 97784205 97785022 -184408642 - MER4E LTR ERV1 0 779 1 2233 111 7 0 chr1 97785641 97785939 -184407725 + AluSx SINE Alu 1 300 -12 193 273 174 87 chr1 97786296 97786468 -184407196 - L2 LINE L2 -1160 2154 1998 2249 116 0 3 chr1 97786468 97786778 -184406886 + AluSq SINE Alu 1 309 -4 193 273 174 87 chr1 97786778 97786916 -184406748 - L2 LINE L2 -1316 1998 1817 260 337 41 52 chr1 97787649 97787821 -184405843 - MIR SINE MIR -71 191 22 2262 103 0 0 chr1 97788080 97788371 -184405293 - AluSg SINE Alu -19 291 1 2336 103 9 100 chr1 97788587 97788682 -184404982 + MLT1B LTR MaLR 10 112 -278 2082 113 0 0 chr1 97788682 97788981 -184404683 - AluSc SINE Alu 0 303 5 2336 103 9 100 chr1 97788981 97789303 -184404361 + MLT1B LTR MaLR 112 390 0 450 307 153 17 chr1 97789311 97789611 -184404053 + L2 LINE L2 1875 2215 -1099 265 316 83 8 chr1 97789943 97790076 -184403588 + L2 LINE L2 2232 2374 -940 691 270 63 81 chr1 97790166 97790373 -184403291 + MER102a DNA MER1_type 2 202 -1215 2200 119 6 3 chr1 97790373 97790684 -184402980 - AluSx SINE Alu 0 312 1 691 270 63 81 chr1 97790684 97790809 -184402855 + MER102a DNA MER1_type 202 328 -2 284 252 268 0 chr1 97790846 97790969 -184402695 + L2 LINE L2 2570 2725 -589 2506 55 0 7 chr1 97791045 97791353 -184402311 - AluY SINE Alu -5 306 1 476 326 12 17 chr1 97791353 97791525 -184402139 + MER5A DNA MER1_type 19 189 0 780 99 0 0 chr1 97792194 97792305 -184401359 + AluSp/q SINE Alu 201 311 -2 226 396 61 6 chr1 97792422 97792586 -184401078 - L3 LINE CR1 -1125 452 280 2624 130 19 28 chr1 97792881 97793116 -184400548 - MSTA LTR MaLR 0 428 197 1668 171 3 10 chr1 97793116 97793415 -184400249 - AluJb SINE Alu -15 297 1 2624 130 19 28 chr1 97793415 97793611 -184400053 - MSTA LTR MaLR -231 197 1 2079 153 44 62 chr1 97793736 97794186 -184399478 - MLT2C2 LTR ERVL -6 458 17 2227 84 10 7 chr1 97794395 97794691 -184398973 - AluSq SINE Alu -16 297 1 25 31 0 0 chr1 97794887 97794919 -184398745 + AT_rich Low_complexity Low_complexity 1 32 0 728 224 88 53 chr1 97794959 97795378 -184398286 + MLT1G1 LTR MaLR 10 545 -50 1845 137 4 11 chr1 97795379 97795656 -184398008 - AluJo SINE Alu -25 287 13 886 143 44 74 chr1 97795678 97795805 -184397859 + MER30 DNA MER1_type 1 121 -109 2392 71 13 23 chr1 97795805 97796114 -184397550 + AluY SINE Alu 1 306 -5 886 143 44 74 chr1 97796114 97796189 -184397475 + MER30 DNA MER1_type 121 197 -33 2199 106 0 0 chr1 97796205 97796515 -184397149 - AluSq SINE Alu 0 310 1 264 190 17 0 chr1 97796521 97796579 -184397085 + MLT1G1 LTR MaLR 537 595 0 2118 120 0 20 chr1 97796749 97797050 -184396614 + AluSx SINE Alu 5 299 -13 2193 91 34 0 chr1 97797666 97797963 -184395701 + AluSg SINE Alu 1 307 -3 1515 110 86 47 chr1 97797974 97798093 -184395571 + L1MA2 LINE L1 5992 6105 -199 2297 62 14 0 chr1 97798093 97798381 -184395283 - AluY SINE Alu -19 292 1 1515 110 86 47 chr1 97798381 97798562 -184395102 + L1MA2 LINE L1 6105 6304 0 479 304 68 85 chr1 97798802 97799200 -184394464 + L2 LINE L2 2824 3214 -58 2517 151 99 19 chr1 97799377 97799920 -184393744 + L1MB8 LINE L1 5505 6106 -72 1188 137 113 0 chr1 97799920 97800132 -184393532 + MER46A DNA MER2_type 1 236 0 2517 151 99 19 chr1 97800132 97800212 -184393452 + L1MB8 LINE L1 6106 6178 0 2434 89 0 0 chr1 97800215 97800519 -184393145 + AluSq SINE Alu 1 304 -9 2111 205 95 5 chr1 97800554 97801114 -184392550 + MER82 DNA MER2_type 37 646 -7 25 31 0 0 chr1 97802566 97802598 -184391066 + AT_rich Low_complexity Low_complexity 1 32 0 2172 85 7 3 chr1 97802659 97802942 -184390722 + AluSp SINE Alu 1 284 -29 201 94 0 0 chr1 97802942 97802974 -184390690 + (CATA)n Simple_repeat Simple_repeat 2 33 0 231 36 0 0 chr1 97804520 97804548 -184389116 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 705 158 58 0 chr1 97804548 97804668 -184388996 - AluJb SINE Alu -30 282 156 2193 88 17 7 chr1 97805356 97805651 -184388013 - AluSq SINE Alu -15 298 1 27 49 0 0 chr1 97805711 97805752 -184387912 + AT_rich Low_complexity Low_complexity 1 41 0 305 253 13 0 chr1 97805779 97805858 -184387806 + L1MB2 LINE L1 3718 3797 -2349 350 154 81 0 chr1 97805859 97805928 -184387736 + L1MC2 LINE L1 5228 5309 -880 252 0 0 0 chr1 97805928 97805956 -184387708 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 350 154 81 0 chr1 97805956 97805984 -184387680 + L1MC2 LINE L1 5309 5333 -856 * 3962 162 66 29 chr1 97805968 97806627 -184387037 + L1MB2 LINE L1 5106 5739 -432 1698 188 3 10 chr1 97806627 97806935 -184386729 + AluJo SINE Alu 1 306 -6 348 43 0 0 chr1 97806935 97806981 -184386683 + (TG)n Simple_repeat Simple_repeat 2 47 0 3962 162 66 29 chr1 97806981 97807353 -184386311 + L1MB2 LINE L1 5738 6171 0 2238 161 35 25 chr1 97807341 97807920 -184385744 + L1MC2 LINE L1 5312 5972 -372 * 1957 122 3 21 chr1 97807920 97808245 -184385419 + AluSx SINE Alu 1 320 0 2238 161 35 25 chr1 97808245 97808614 -184385050 + L1MC2 LINE L1 5972 6336 -8 237 61 0 0 chr1 97808649 97808682 -184384982 - L1MA4A LINE L1 -11 6292 6260 22 70 0 0 chr1 97808688 97808731 -184384933 + AT_rich Low_complexity Low_complexity 1 43 0 212 158 0 26 chr1 97809266 97809304 -184384360 + GA-rich Low_complexity Low_complexity 6 42 0 474 263 108 61 chr1 97809686 97809983 -184383681 + L1ME LINE L1 5355 5662 -459 272 91 23 0 chr1 97810410 97810454 -184383210 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 2094 93 0 77 chr1 97810456 97810779 -184382885 - AluSc SINE Alu -2 307 10 2390 54 0 7 chr1 97811339 97811634 -184382030 - AluY SINE Alu -18 293 1 1677 157 40 11 chr1 97812722 97813073 -184380591 - Looper DNA T2_type 0 1558 1198 2244 87 0 39 chr1 97813073 97813385 -184380279 - AluSp SINE Alu -2 311 12 1539 104 35 62 chr1 97813389 97813476 -184380188 + AluSx SINE Alu 52 140 -172 2109 57 14 25 chr1 97813476 97813824 -184379840 + AluY SINE Alu 1 345 0 1539 104 35 62 chr1 97813824 97813993 -184379671 + AluSx SINE Alu 140 303 -9 682 154 47 13 chr1 97813994 97814143 -184379521 - Looper DNA T2_type -744 814 661 522 229 102 12 chr1 97814147 97814284 -184379380 + MER3 DNA MER1_type 6 162 -47 2322 112 0 3 chr1 97814284 97814587 -184379077 + AluSp SINE Alu 1 302 -11 522 229 102 12 chr1 97814587 97814615 -184379049 + MER3 DNA MER1_type 162 186 -23 822 142 53 30 chr1 97814627 97814796 -184378868 - Looper DNA T2_type -889 669 497 993 99 0 0 chr1 97814853 97814984 -184378680 - AluSg SINE Alu -179 131 1 2249 107 0 22 chr1 97815667 97815986 -184377678 + AluSx SINE Alu 1 312 0 191 376 40 69 chr1 97816284 97816457 -184377207 - L2 LINE L2 -3 3269 3102 353 363 102 23 chr1 97816684 97817127 -184376537 - L2 LINE L2 -530 2784 2307 304 255 245 20 chr1 97817143 97817245 -184376419 + MER5A DNA MER1_type 57 181 -8 * 307 312 101 28 chr1 97817238 97817565 -184376099 - L2 LINE L2 -977 2337 1987 210 203 17 68 chr1 97817828 97817887 -184375777 + L2 LINE L2 3256 3311 -2 382 145 34 128 chr1 97817905 97818022 -184375642 - MIR SINE MIR -33 229 124 1013 161 60 27 chr1 97818127 97818374 -184375290 - Tigger4(Zombi) DNA MER2_type 0 2731 1 975 240 23 0 chr1 97818427 97818644 -184375020 + MER58A DNA MER1_type 1 222 -2 2181 106 13 7 chr1 97819115 97819416 -184374248 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr1 97819628 97819649 -184374015 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 97820017 97820037 -184373627 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2359 68 0 36 chr1 97820851 97821160 -184372504 - AluSg SINE Alu -12 298 1 26 50 0 0 chr1 97821475 97821515 -184372149 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr1 97822347 97822369 -184371295 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2274 86 0 52 chr1 97822667 97822991 -184370673 + AluSc SINE Alu 1 307 -2 3493 155 75 25 chr1 97823107 97823559 -184370105 + L1MB3 LINE L1 5372 5879 -304 2193 107 7 3 chr1 97823559 97823859 -184369805 + AluSq SINE Alu 1 301 -12 3493 155 75 25 chr1 97823859 97824166 -184369498 + L1MB3 LINE L1 5879 6169 -14 209 338 42 14 chr1 97824654 97824725 -184368939 + L2 LINE L2 3009 3081 -191 459 125 0 0 chr1 97825053 97825125 -184368539 + (CA)n Simple_repeat Simple_repeat 1 72 0 328 166 0 41 chr1 97825882 97825968 -184367696 + Tigger4(Zombi) DNA MER2_type 1 2731 0 207 179 26 0 chr1 97826221 97826260 -184367404 + (CCA)n Simple_repeat Simple_repeat 3 42 0 378 321 107 18 chr1 97826425 97826593 -184367071 + MIR SINE MIR 1 183 -79 768 270 0 6 chr1 97826838 97827012 -184366652 + MER5B DNA MER1_type 6 178 0 2254 98 3 10 chr1 97828694 97829000 -184364664 + AluSx SINE Alu 1 304 -8 826 143 8 0 chr1 97829166 97829285 -184364379 - FLAM_C SINE Alu -19 124 5 1915 86 66 4 chr1 97829389 97829645 -184364019 - AluSx SINE Alu -23 289 18 2133 131 0 13 chr1 97830029 97830343 -184363321 + AluSg SINE Alu 1 310 0 368 342 152 19 chr1 97830465 97830933 -184362731 + L2 LINE L2 2430 2959 -355 1665 153 3 68 chr1 97831204 97831525 -184362139 - AluJb SINE Alu -12 300 1 2338 106 3 0 chr1 97831762 97832064 -184361600 - AluSp SINE Alu -10 303 1 27 0 0 0 chr1 97832355 97832382 -184361282 + AT_rich Low_complexity Low_complexity 1 27 0 476 237 150 23 chr1 97832449 97832622 -184361042 + MIR SINE MIR 68 262 0 2117 98 3 30 chr1 97832648 97832953 -184360711 - AluY SINE Alu -14 297 1 200 306 93 19 chr1 97833632 97833740 -184359924 - MIR SINE MIR -51 211 96 * 606 299 86 18 chr1 97833716 97833937 -184359727 + MIR SINE MIR 6 241 -21 1911 94 10 56 chr1 97834042 97834375 -184359289 + AluSc SINE Alu 5 324 0 23 33 0 0 chr1 97835049 97835079 -184358585 + AT_rich Low_complexity Low_complexity 1 30 0 1613 204 10 0 chr1 97835275 97835604 -184358060 + AluJo SINE Alu 3 312 0 859 288 47 0 chr1 97836128 97836364 -184357300 - MIR SINE MIR -13 249 3 2086 88 0 49 chr1 97836661 97836967 -184356697 + AluSq SINE Alu 1 291 -22 233 327 204 0 chr1 97837395 97837508 -184356156 + L3 LINE CR1 463 598 -979 1970 80 76 4 chr1 97837739 97838002 -184355662 + AluSq SINE Alu 1 282 -31 1429 104 0 5 chr1 97839285 97839478 -184354186 - AluSg/x SINE Alu 0 312 121 9028 23 3 256 chr1 97839502 97841353 -184352311 - SVA Other Other -3 1383 2 258 125 0 0 chr1 97841358 97841406 -184352258 + (GGGAGA)n Simple_repeat Simple_repeat 1 48 0 1125 69 0 0 chr1 97841419 97841550 -184352114 - AluY SINE Alu -177 134 4 1377 148 0 0 chr1 97841620 97841822 -184351842 - AluJb SINE Alu -24 288 87 2044 94 54 0 chr1 97844317 97844594 -184349070 - AluSc SINE Alu -16 293 2 319 345 58 20 chr1 97844909 97845109 -184348555 + MIR3 SINE MIR 3 206 -56 408 301 138 51 chr1 97845521 97845913 -184347751 + L2 LINE L2 2078 2503 -811 198 333 60 17 chr1 97846069 97846186 -184347478 + L2 LINE L2 2933 3054 -218 694 218 34 105 chr1 97846463 97846702 -184346962 - MER58A DNA MER1_type -1 223 2 1143 207 143 102 chr1 97847044 97847610 -184346054 + MLT1G1 LTR MaLR 5 593 -2 335 341 53 0 chr1 97847844 97847976 -184345688 + MIR SINE MIR 122 260 -2 2159 127 3 10 chr1 97848417 97848725 -184344939 + AluSq SINE Alu 1 306 -7 544 286 107 19 chr1 97849069 97849275 -184344389 - MIR SINE MIR -37 225 2 1919 102 58 4 chr1 97850439 97850713 -184342951 + AluSg SINE Alu 1 289 -21 2412 81 0 0 chr1 97851139 97851437 -184342227 + AluSc SINE Alu 1 298 -11 308 356 12 74 chr1 97851685 97852008 -184341656 - L2 LINE L2 -4 3268 2966 372 312 163 47 chr1 97852239 97852500 -184341164 - L2 LINE L2 -556 2758 2456 1993 114 68 0 chr1 97852500 97852780 -184340884 - AluSx SINE Alu -13 299 1 372 312 163 47 chr1 97852780 97852819 -184340845 - L2 LINE L2 -858 2456 2423 237 345 155 7 chr1 97852899 97853047 -184340617 - L2 LINE L2 -706 2608 2439 977 270 105 36 chr1 97853129 97853606 -184340058 + MLT1H LTR MaLR 36 545 -4 183 156 0 0 chr1 97855390 97855422 -184338242 + GA-rich Low_complexity Low_complexity 3 34 0 2290 112 0 0 chr1 97857952 97858264 -184335400 + AluSx SINE Alu 1 312 0 534 221 15 30 chr1 97858265 97858396 -184335268 - MIR SINE MIR -119 143 15 24 0 0 0 chr1 97858954 97858978 -184334686 + AT_rich Low_complexity Low_complexity 1 24 0 423 251 23 41 chr1 97859009 97859180 -184334484 - L1MC4a LINE L1 -1916 5961 5794 467 299 104 40 chr1 97859222 97859662 -184334002 - L1MC4a LINE L1 -799 5416 5267 1630 104 127 19 chr1 97859662 97859960 -184333704 - AluSg1 SINE Alu 0 309 1 467 299 104 40 chr1 97859960 97860180 -184333484 - L1MC4a LINE L1 -948 5267 5062 538 250 88 19 chr1 97861465 97861625 -184332039 + L2 LINE L2 1454 1624 -1690 892 92 87 27 chr1 97861627 97861811 -184331853 + L1MA8 LINE L1 6097 6291 0 4907 251 99 31 chr1 97861816 97862157 -184331507 - L1MEc LINE L1 -3424 2791 2474 1307 203 116 46 chr1 97862157 97862527 -184331137 + MSTD LTR MaLR 1 396 0 4907 251 99 31 chr1 97862527 97863135 -184330529 - L1MEc LINE L1 -3741 2474 1908 249 33 0 0 chr1 97863135 97863165 -184330499 + (TG)n Simple_repeat Simple_repeat 1 30 0 4907 251 99 31 chr1 97863165 97863938 -184329726 - L1MEc LINE L1 -4307 1908 1189 1820 121 104 52 chr1 97863938 97864114 -184329550 - THE1B LTR MaLR 0 364 199 2420 81 0 0 chr1 97864114 97864410 -184329254 - AluY SINE Alu -14 297 2 1820 121 104 52 chr1 97864410 97864579 -184329085 - THE1B LTR MaLR -165 199 1 11715 80 22 3 chr1 97864579 97866129 -184327535 - THE1B-int LTR MaLR 0 1580 1 1910 134 87 29 chr1 97866129 97866473 -184327191 - THE1B LTR MaLR 0 364 1 4907 251 99 31 chr1 97866473 97867361 -184326303 - L1MEc LINE L1 -5025 1190 39 235 243 129 0 chr1 97869738 97869808 -184323856 - MIR SINE MIR -1 261 183 213 238 0 0 chr1 97870336 97870378 -184323286 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 718 215 0 0 chr1 97872658 97872788 -184320876 - FLAM_C SINE Alu -2 131 2 646 139 84 69 chr1 97872886 97873088 -184320576 + L1MA4A LINE L1 5874 6078 -225 257 209 121 11 chr1 97873586 97873677 -184319987 - MARNA DNA Mariner -91 495 395 32 57 0 0 chr1 97873710 97873763 -184319901 + AT_rich Low_complexity Low_complexity 1 53 0 2482 196 58 48 chr1 97873876 97875361 -184318303 - L1MCa LINE L1 -4854 1053 113 2347 85 0 3 chr1 97875361 97875668 -184317996 + AluY SINE Alu 1 306 -5 2482 196 58 48 chr1 97875668 97875756 -184317908 - L1MCa LINE L1 -5794 113 27 2047 153 0 3 chr1 97876171 97876479 -184317185 - AluSx SINE Alu -5 307 1 833 204 54 14 chr1 97876534 97876755 -184316909 - L1MD3 LINE L1 0 7995 7766 34 0 0 0 chr1 97876921 97876955 -184316709 + AT_rich Low_complexity Low_complexity 1 34 0 398 297 74 39 chr1 97877185 97877399 -184316265 - MIR SINE MIR -2 260 37 2191 98 0 29 chr1 97877533 97877839 -184315825 + AluSx SINE Alu 5 301 -11 25 0 0 0 chr1 97878078 97878103 -184315561 + AT_rich Low_complexity Low_complexity 1 25 0 494 228 188 7 chr1 97880258 97880407 -184313257 - MER5B DNA MER1_type -1 177 2 1666 182 7 32 chr1 97880797 97881105 -184312559 + AluJo SINE Alu 1 300 -12 1622 178 27 14 chr1 97881424 97881716 -184311948 + AluJo SINE Alu 1 296 -16 2248 95 0 10 chr1 97882205 97882510 -184311154 + AluSx SINE Alu 1 302 -10 199 329 128 20 chr1 97883537 97883686 -184309978 + L2 LINE L2 2365 2529 -785 1787 162 20 20 chr1 97884152 97884455 -184309209 + AluJb SINE Alu 3 305 -7 2212 102 10 3 chr1 97884459 97884752 -184308912 + AluSq SINE Alu 1 295 -18 2112 124 10 0 chr1 97885070 97885369 -184308295 - AluSx SINE Alu -10 302 1 315 310 146 13 chr1 97886072 97886230 -184307434 - MIR SINE MIR -12 250 72 806 161 0 0 chr1 97886502 97886632 -184307032 + FLAM_C SINE Alu 1 130 -3 316 285 76 42 chr1 97886984 97887128 -184306536 - MIR3 SINE MIR -9 199 51 385 100 100 0 chr1 97887642 97887702 -184305962 - LTR40a LTR ERVL 0 519 454 648 223 60 29 chr1 97887735 97888014 -184305650 - LTR40a LTR ERVL -144 318 1 24 0 0 0 chr1 97888232 97888256 -184305408 + AT_rich Low_complexity Low_complexity 1 24 0 183 231 0 0 chr1 97888535 97888574 -184305090 - L2 LINE L2 -301 2971 2933 702 226 19 13 chr1 97889010 97889165 -184304499 - FAM SINE Alu -17 158 3 2090 151 0 0 chr1 97889816 97890120 -184303544 - AluSx SINE Alu -4 308 5 21 0 0 0 chr1 97890136 97890157 -184303507 + AT_rich Low_complexity Low_complexity 1 21 0 758 149 0 0 chr1 97890180 97890301 -184303363 + AluSg/x SINE Alu 178 298 -14 501 239 65 7 chr1 97890355 97890493 -184303171 - MER3 DNA MER1_type -63 146 1 313 229 165 9 chr1 97890694 97890803 -184302861 + L1MC4 LINE L1 7127 7252 -790 612 259 56 106 chr1 97890812 97891557 -184302107 + L1MC4 LINE L1 7335 8042 0 11602 129 62 18 chr1 97892050 97892964 -184300700 - Tigger1 DNA MER2_type 0 2418 1546 2050 138 0 0 chr1 97892964 97893253 -184300411 - AluSx SINE Alu -23 289 1 11602 129 62 18 chr1 97893253 97894194 -184299470 - Tigger1 DNA MER2_type -872 1546 456 2203 98 3 23 chr1 97894194 97894501 -184299163 + AluSx SINE Alu 5 305 -7 11602 129 62 18 chr1 97894501 97894748 -184298916 - Tigger1 DNA MER2_type -1962 456 221 261 0 0 0 chr1 97894756 97894785 -184298879 + (A)n Simple_repeat Simple_repeat 1 29 0 2278 90 3 0 chr1 97894785 97895074 -184298590 + AluSg SINE Alu 1 290 -20 237 167 0 21 chr1 97895074 97895115 -184298549 - Tigger1 DNA MER2_type -2363 55 14 1207 144 0 6 chr1 97895591 97895771 -184297893 + AluJb SINE Alu 62 240 -72 303 176 0 0 chr1 97895785 97895836 -184297828 - L1ME2 LINE L1 -20 6144 6094 1084 126 307 20 chr1 97895978 97896232 -184297432 + MER1B DNA MER1_type 2 328 -11 1644 179 6 13 chr1 97896419 97896731 -184296933 + AluJo SINE Alu 1 310 -2 201 294 0 0 chr1 97896781 97896832 -184296832 + (TA)n Simple_repeat Simple_repeat 2 52 0 358 237 175 40 chr1 97897955 97898132 -184295532 - MIR SINE MIR -56 206 6 2175 104 10 13 chr1 97898499 97898807 -184294857 - AluSx SINE Alu -5 307 1 2687 148 16 30 chr1 97898831 97899270 -184294394 - Tigger2a DNA MER2_type 0 434 2 5630 219 70 19 chr1 97899359 97900091 -184293573 + L1MC2 LINE L1 3546 4239 -2105 2232 96 0 0 chr1 97900091 97900373 -184293291 + AluSx SINE Alu 1 282 -30 5630 219 70 19 chr1 97900373 97901835 -184291829 + L1MC2 LINE L1 4239 5849 -495 22 0 0 0 chr1 97901844 97901866 -184291798 + AT_rich Low_complexity Low_complexity 1 22 0 553 148 0 34 chr1 97901872 97901960 -184291704 + FRAM SINE Alu 73 157 -19 225 287 69 40 chr1 97902110 97902284 -184291380 + L1ME2 LINE L1 5934 6112 -52 1675 214 56 37 chr1 97902302 97902787 -184290877 - L1MB5 LINE L1 0 6174 5681 530 286 107 19 chr1 97903877 97904083 -184289581 + MIR SINE MIR 2 225 -37 2146 127 3 10 chr1 97904427 97904735 -184288929 - AluSq SINE Alu -7 306 1 330 341 53 0 chr1 97905176 97905308 -184288356 - MIR SINE MIR -2 260 122 1337 210 141 102 chr1 97905542 97906109 -184287555 - MLT1G1 LTR MaLR -2 593 5 751 210 33 119 chr1 97906451 97906694 -184286970 + MER58A DNA MER1_type 2 223 -1 187 333 60 17 chr1 97906971 97907088 -184286576 - L2 LINE L2 -218 3054 2933 371 296 140 54 chr1 97907244 97907636 -184286028 - L2 LINE L2 -811 2503 2078 314 347 56 20 chr1 97908048 97908248 -184285416 - MIR3 SINE MIR -57 205 3 2051 94 54 0 chr1 97908563 97908840 -184284824 + AluSc SINE Alu 2 293 -16 1400 144 0 0 chr1 97911336 97911538 -184282126 + AluJb SINE Alu 87 288 -24 2428 78 0 0 chr1 97911608 97911904 -184281760 + AluSc SINE Alu 4 299 -10 1019 110 110 0 chr1 97911904 97912049 -184281615 + AluSg/x SINE Alu 134 294 -18 710 108 144 18 chr1 97912084 97912195 -184281469 + AluSg/x SINE Alu 174 298 -12 207 267 0 0 chr1 97912937 97913012 -184280652 + CT-rich Low_complexity Low_complexity 2 76 0 331 329 102 51 chr1 97913328 97913804 -184279860 + L2 LINE L2 2552 3081 -191 353 298 65 16 chr1 97914347 97914471 -184279193 + L2 LINE L2 3179 3308 -5 539 199 87 181 chr1 97914475 97914563 -184279101 - MIR SINE MIR -4 258 163 2215 99 0 3 chr1 97914563 97914856 -184278808 - AluSg1 SINE Alu -16 293 2 539 199 87 181 chr1 97914856 97915033 -184278631 - MIR SINE MIR -99 163 18 4846 102 168 0 chr1 97915184 97915891 -184277773 - LTR12 LTR ERV1 0 826 1 5021 81 0 2 chr1 97915894 97916535 -184277129 - HERV9 LTR ERV1 -4 8395 7756 2326 178 132 56 chr1 97916529 97917348 -184276316 - HERV9 LTR ERV1 -5176 1720 840 * 24755 78 3 3 chr1 97917341 97920504 -184273160 - HERV9 LTR ERV1 -3445 4954 1792 2759 97 167 120 chr1 97920504 97921378 -184272286 + pTR5 LTR ERV1 1 714 0 * 10360 112 3 8 chr1 97921378 97922831 -184270833 - HERV9 LTR ERV1 -6954 1445 1 4300 91 255 1 chr1 97922831 97923490 -184270174 - LTR12 LTR ERV1 0 826 1 426 337 32 21 chr1 97923623 97923813 -184269851 - MLT1K LTR MaLR -3 585 394 2386 89 3 0 chr1 97923910 97924212 -184269452 + AluSp SINE Alu 1 303 -10 297 0 0 0 chr1 97924301 97924334 -184269330 + (TG)n Simple_repeat Simple_repeat 2 34 0 312 27 0 0 chr1 97924335 97924372 -184269292 + (GA)n Simple_repeat Simple_repeat 2 38 0 210 371 0 0 chr1 97924476 97924538 -184269126 - L3 LINE CR1 -8 1569 1508 186 351 26 0 chr1 97924629 97924706 -184268958 - L3 LINE CR1 -273 1304 1226 2112 108 42 0 chr1 97925554 97925840 -184267824 - AluSg SINE Alu -12 298 1 241 87 22 22 chr1 97926314 97926360 -184267304 + MADE1 DNA Mariner 1 46 -34 301 242 291 6 chr1 97926401 97926583 -184267081 - MIR SINE MIR -8 254 21 1028 176 0 21 chr1 97926673 97926861 -184266803 - AluJo SINE Alu -9 303 120 606 156 21 0 chr1 97927184 97927280 -184266384 - FLAM_A SINE Alu -35 107 10 27889 61 6 1 chr1 97927365 97930860 -184262804 + L1P LINE L1 9 3521 -2625 633 49 0 0 chr1 97930875 97930957 -184262707 + L1P LINE L1 3874 3955 -2191 * 2945 99 9 12 chr1 97930956 97931379 -184262285 - L1P LINE L1 -5541 605 184 16971 32 3 0 chr1 97931387 97934055 -184259609 + L1PA4 LINE L1 3479 6155 0 1581 152 61 96 chr1 97934110 97934419 -184259245 - MLT1A1 LTR MaLR 0 365 47 2153 106 0 3 chr1 97934419 97934737 -184258927 - AluSg SINE Alu 0 317 1 2214 101 0 7 chr1 97934746 97935033 -184258631 - AluSc SINE Alu -24 285 1 1581 152 61 96 chr1 97935033 97935087 -184258577 - MLT1A1 LTR MaLR -326 39 4 231 114 0 0 chr1 97935349 97935384 -184258280 + (TG)n Simple_repeat Simple_repeat 2 36 0 546 258 86 0 chr1 97935447 97935598 -184258066 - MIR SINE MIR -97 165 2 231 261 151 0 chr1 97937224 97937343 -184256321 + L1ME4a LINE L1 5984 6120 -1 2239 124 0 0 chr1 97937972 97938270 -184255394 + AluSg SINE Alu 1 298 -12 631 284 7 83 chr1 97938300 97938578 -184255086 + MIR SINE MIR 6 262 0 1012 276 82 24 chr1 97938733 97939110 -184254554 - LTR33 LTR ERVL -3 518 120 679 179 0 18 chr1 97939726 97939838 -184253826 - FLAM_A SINE Alu -32 110 1 452 316 149 36 chr1 97939838 97940555 -184253109 - L2 LINE L2 -9 3263 2463 2329 153 11 32 chr1 97940729 97941102 -184252562 + MLT1A1 LTR MaLR 1 365 0 435 254 45 0 chr1 97941159 97941293 -184252371 + MER103 DNA DNA 15 154 -12 742 181 167 73 chr1 97941361 97941609 -184252055 + MER5C DNA MER1_type 3 283 -41 288 0 0 0 chr1 97941609 97941641 -184252023 + (CA)n Simple_repeat Simple_repeat 1 32 0 742 181 167 73 chr1 97941641 97941679 -184251985 + MER5C DNA MER1_type 283 316 -8 684 238 60 0 chr1 97941712 97941880 -184251784 - MER5B DNA MER1_type 0 178 1 440 305 30 24 chr1 97941975 97942139 -184251525 + MER5B DNA MER1_type 14 178 0 225 138 0 103 chr1 97942169 97942227 -184251437 + MER65A LTR ERV1 1 52 -393 2410 98 0 0 chr1 97942227 97942532 -184251132 + AluSg SINE Alu 1 305 -5 2179 118 0 0 chr1 97943120 97943416 -184250248 - AluSc SINE Alu -13 296 1 197 176 0 20 chr1 97943735 97943786 -184249878 + CT-rich Low_complexity Low_complexity 4 53 0 2265 103 0 0 chr1 97944446 97944738 -184248926 - AluSx SINE Alu -20 292 1 210 254 0 67 chr1 97944975 97945109 -184248555 + T-rich Low_complexity Low_complexity 2 126 0 399 21 0 0 chr1 97945434 97945482 -184248182 + (CA)n Simple_repeat Simple_repeat 1 48 0 232 203 14 54 chr1 97945645 97945719 -184247945 + LTR41 LTR ERVL 692 762 -11 1167 119 72 37 chr1 97947375 97947707 -184245957 - MLT1B LTR MaLR 0 390 1 1659 207 0 3 chr1 97948339 97948634 -184245030 - AluJb SINE Alu -18 294 1 277 304 44 7 chr1 97949038 97949173 -184244491 + L1MC4a LINE L1 5409 5548 -2260 268 290 43 0 chr1 97949467 97949560 -184244104 + L1MC4a LINE L1 5435 5531 -2277 187 242 0 97 chr1 97949570 97949632 -184244032 - L2 LINE L2 -64 3208 3153 878 288 48 17 chr1 97949977 97950331 -184243333 + L1MC4a LINE L1 5552 5916 -1892 413 339 36 0 chr1 97950411 97950523 -184243141 + L2 LINE L2 3150 3265 -7 435 194 46 37 chr1 97950781 97950889 -184242775 + L3 LINE CR1 1264 1372 -205 2177 113 3 7 chr1 97951038 97951347 -184242317 + AluSg SINE Alu 1 308 -2 528 274 142 5 chr1 97951351 97951548 -184242116 + MIR SINE MIR 36 259 -3 795 269 80 58 chr1 97951826 97952356 -184241308 - LTR50 LTR ERVL 0 523 1 2092 122 7 7 chr1 97954514 97954810 -184238854 - AluSx SINE Alu -16 296 1 379 275 40 13 chr1 97955876 97956025 -184237639 + L1M4 LINE L1 3743 3895 -2251 1581 137 9 0 chr1 97957090 97957317 -184236347 + AluJo SINE Alu 55 283 -29 195 204 0 0 chr1 97957323 97957367 -184236297 + (CA)n Simple_repeat Simple_repeat 1 44 0 1641 185 0 3 chr1 97957772 97958059 -184235605 - AluJo SINE Alu -26 286 1 427 336 0 0 chr1 97958107 97958211 -184235453 + MER5B DNA MER1_type 52 155 -23 288 295 36 9 chr1 97959743 97959855 -184233809 - L1MC5 LINE L1 -54 7907 7793 231 61 0 0 chr1 97960143 97960176 -184233488 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2140 96 3 3 chr1 97960179 97960461 -184233203 - AluSq SINE Alu -31 282 1 22 0 0 0 chr1 97960668 97960690 -184232974 + AT_rich Low_complexity Low_complexity 1 22 0 2213 185 46 52 chr1 97961403 97961900 -184231764 + MLT1D LTR MaLR 9 502 -3 421 245 0 32 chr1 97962562 97962656 -184231008 - FLAM_A SINE Alu -48 94 4 2220 97 3 17 chr1 97962811 97963110 -184230554 - AluSp SINE Alu -18 295 1 21 36 0 0 chr1 97963194 97963222 -184230442 + AT_rich Low_complexity Low_complexity 1 28 0 5563 137 19 0 chr1 97963222 97964184 -184229480 - L1PB3 LINE L1 -7 6147 5171 1452 171 69 4 chr1 97964345 97964619 -184229045 - AluJo SINE Alu -20 292 1 53 40 0 0 chr1 97965599 97965673 -184227991 + AT_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr1 97965722 97965744 -184227920 + AT_rich Low_complexity Low_complexity 1 22 0 2418 77 3 0 chr1 97965758 97966056 -184227608 + AluSp SINE Alu 1 299 -14 25 62 0 16 chr1 97966281 97966323 -184227341 + AT_rich Low_complexity Low_complexity 1 43 -20 1946 122 25 3 chr1 97966323 97966609 -184227055 - AluSx SINE Alu -20 292 1 25 62 0 16 chr1 97966609 97966630 -184227034 + AT_rich Low_complexity Low_complexity 43 63 0 28 0 0 0 chr1 97966809 97966837 -184226827 + AT_rich Low_complexity Low_complexity 1 28 0 324 308 121 0 chr1 97967000 97967091 -184226573 - L2 LINE L2 -1 3271 3170 282 29 0 0 chr1 97967206 97967241 -184226423 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1645 150 30 50 chr1 97968115 97968275 -184225389 + MER44D DNA MER2_type 8 170 -2321 921 154 13 19 chr1 97968275 97968431 -184225233 - FRAM SINE Alu -11 155 1 1645 150 30 50 chr1 97968431 97968609 -184225055 + MER44D DNA MER2_type 170 609 0 746 222 185 8 chr1 97968613 97969080 -184224584 - L1MC4a LINE L1 -68 7807 7261 193 348 36 27 chr1 97969331 97969443 -184224221 + MIR SINE MIR 19 131 -131 418 215 89 30 chr1 97969465 97969600 -184224064 + L1ME1 LINE L1 5920 6062 -104 342 228 13 13 chr1 97969868 97969947 -184223717 + MER21B LTR ERV1 12 90 -773 2043 331 71 45 chr1 97969968 97970742 -184222922 + MER21B LTR ERV1 19 812 -51 29 28 0 0 chr1 97972662 97972698 -184220966 + AT_rich Low_complexity Low_complexity 1 36 0 1394 193 72 0 chr1 97972758 97973048 -184220616 + AluJo SINE Alu 1 311 -1 1087 158 99 116 chr1 97973868 97974222 -184219442 + MER7A DNA MER2_type 1 346 0 22 35 0 0 chr1 97974689 97974718 -184218946 + AT_rich Low_complexity Low_complexity 1 29 0 1911 150 31 0 chr1 97974831 97975125 -184218539 - AluJb SINE Alu -9 303 1 3298 180 34 24 chr1 97975157 97975912 -184217752 - L1MB3 LINE L1 -2 6181 5419 549 276 13 32 chr1 97976072 97976228 -184217436 - L2 LINE L2 0 3313 3161 1637 117 58 96 chr1 97976892 97977268 -184216396 - THE1B LTR MaLR 0 364 3 9345 126 15 56 chr1 97977268 97978488 -184215176 - THE1C-int LTR MaLR -1 1579 443 2420 68 0 0 chr1 97978488 97978783 -184214881 - AluY SINE Alu -16 295 1 9345 126 15 56 chr1 97978783 97979207 -184214457 - THE1C-int LTR MaLR -1137 443 3 1730 144 92 14 chr1 97979209 97979557 -184214107 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr1 97979702 97979725 -184213939 + AT_rich Low_complexity Low_complexity 1 23 0 2168 106 3 0 chr1 97979730 97980023 -184213641 + AluSg SINE Alu 1 294 -16 260 323 232 0 chr1 97980032 97980187 -184213477 - MIR SINE MIR 0 262 72 1345 145 29 103 chr1 97980572 97980882 -184212782 + AluSq SINE Alu 1 287 -26 2474 48 10 0 chr1 97981046 97981340 -184212324 + AluY SINE Alu 1 297 -14 301 333 0 0 chr1 97981346 97981436 -184212228 + L1MC4 LINE L1 6614 6703 -1339 * 348 234 0 43 chr1 97981408 97981502 -184212162 - L1MC4 LINE L1 -1339 6703 6614 303 333 0 0 chr1 97981434 97981524 -184212140 + L1MC4 LINE L1 6614 6703 -1339 * 1502 219 66 56 chr1 97982391 97982889 -184210775 + MLT1D LTR MaLR 1 503 -2 2117 118 3 23 chr1 97983041 97983346 -184210318 - AluSg SINE Alu -11 299 1 299 270 191 7 chr1 97983346 97983498 -184210166 - LTR67 LTR ERVL -5 552 373 320 345 74 7 chr1 97983603 97983751 -184209913 + L2 LINE L2 2776 2933 -381 881 38 0 0 chr1 97984215 97984321 -184209343 + HERVK11 LTR ERVK 6662 6767 -1186 * 5605 47 13 0 chr1 97984306 97984984 -184208680 + HERVK11 LTR ERVK 6957 7643 -310 502 176 59 0 chr1 97984995 97985097 -184208567 - MER34C LTR ERV1 -318 267 160 474 235 26 46 chr1 97985100 97985253 -184208411 - MER57A-int LTR ERV1 -4133 990 841 3278 211 15 63 chr1 97985364 97985546 -184208118 - MER57A-int LTR ERV1 -6705 832 643 4980 62 5 0 chr1 97985546 97986173 -184207491 - L1PA7 LINE L1 -3 6151 5522 3278 211 15 63 chr1 97986173 97986620 -184207044 - MER57A-int LTR ERV1 -6894 643 254 2004 106 23 43 chr1 97986620 97986785 -184206879 - AluSp SINE Alu -17 296 138 225 0 0 0 chr1 97986785 97986810 -184206854 + (TA)n Simple_repeat Simple_repeat 2 26 0 2004 106 23 43 chr1 97986810 97986946 -184206718 - AluSp SINE Alu -175 138 1 3278 211 15 63 chr1 97986946 97987189 -184206475 - MER57A-int LTR ERV1 -7283 254 1 2091 162 22 20 chr1 97987189 97987591 -184206073 - MER57A LTR ERV1 0 403 1 466 305 116 0 chr1 97987596 97987760 -184205904 + MIR SINE MIR 20 202 -60 1567 135 95 4 chr1 97987890 97988142 -184205522 + MER1B DNA MER1_type 1 275 -64 2217 91 16 3 chr1 97988346 97988653 -184205011 - AluSp SINE Alu -1 312 2 991 227 74 28 chr1 97988679 97989153 -184204511 - MER39 LTR ERV1 0 638 6 430 280 45 33 chr1 97989590 97989833 -184203831 - MER34B LTR ERV1 0 565 320 444 267 121 29 chr1 97991649 97991922 -184201742 - L2 LINE L2 0 3313 3016 22 0 0 0 chr1 97991990 97992012 -184201652 + AT_rich Low_complexity Low_complexity 1 22 0 2436 86 3 0 chr1 97992154 97992457 -184201207 + AluSp SINE Alu 1 304 -9 311 234 84 62 chr1 97992640 97992866 -184200798 + L1MEd LINE L1 697 927 -5192 402 327 85 77 chr1 97992901 97993409 -184200255 + L1ME LINE L1 23 534 -5536 546 139 0 23 chr1 97993625 97993711 -184199953 - Tigger7 DNA MER2_type 0 2491 2408 1126 246 32 0 chr1 97993714 97993978 -184199686 - Tigger7 DNA MER2_type -459 274 1 514 206 116 16 chr1 97994818 97994979 -184198685 + MER5A DNA MER1_type 4 183 -6 2333 107 3 0 chr1 97995162 97995471 -184198193 - AluSp SINE Alu -3 310 1 4014 163 130 21 chr1 97995982 97996077 -184197587 + Charlie1 DNA MER1_type 1647 1730 -1031 1318 207 120 47 chr1 97996077 97996503 -184197161 + MSTB2 LTR MaLR 1 457 0 4014 163 130 21 chr1 97996503 97997412 -184196252 + Charlie1 DNA MER1_type 1730 2761 0 190 145 0 97 chr1 97997575 97997637 -184196027 + L2 LINE L2 2924 2979 -334 2317 56 0 0 chr1 97997675 97997945 -184195719 + AluY SINE Alu 29 298 -13 2041 120 4 0 chr1 97997950 97998257 -184195407 + AluSc SINE Alu 3 310 0 1608 153 19 10 chr1 97998291 97998598 -184195066 - MER65A LTR ERV1 0 445 136 526 330 104 36 chr1 97998893 97999308 -184194356 - L3 LINE CR1 -14 1563 1121 196 187 0 206 chr1 97999496 97999556 -184194108 + MIR SINE MIR 160 190 -72 2335 82 7 0 chr1 97999556 97999849 -184193815 + AluY SINE Alu 1 295 -16 196 187 0 206 chr1 97999849 97999895 -184193769 + MIR SINE MIR 190 244 -18 234 296 11 34 chr1 97999905 97999993 -184193671 - L3 LINE CR1 -556 1021 936 280 127 18 0 chr1 98000897 98000952 -184192712 - L1MD3 LINE L1 -10 7985 7930 22 35 0 0 chr1 98001072 98001101 -184192563 + AT_rich Low_complexity Low_complexity 1 29 0 279 292 168 49 chr1 98001204 98001430 -184192234 + MIR SINE MIR 8 260 -2 27 49 0 0 chr1 98001946 98001987 -184191677 + AT_rich Low_complexity Low_complexity 1 41 0 3527 144 57 73 chr1 98002025 98002852 -184190812 - L1MB5 LINE L1 -9 6165 5352 538 220 25 6 chr1 98002847 98003006 -184190658 - L1MDa LINE L1 -3084 3456 3295 * 4147 191 92 85 chr1 98002996 98004258 -184189406 - L1MDa LINE L1 -4031 2509 842 1624 131 0 8 chr1 98004258 98004495 -184189169 - AluSg SINE Alu -75 235 1 4147 191 92 85 chr1 98004495 98005326 -184188338 - L1MDa LINE L1 -5698 842 18 1848 157 0 20 chr1 98005534 98005827 -184187837 - AluJo SINE Alu -25 287 1 346 206 43 65 chr1 98007318 98007410 -184186254 - Tigger2 DNA MER2_type 0 2718 2629 3786 52 8 2 chr1 98007436 98007916 -184185748 - L1PA7 LINE L1 -1 6153 5671 1014 130 28 74 chr1 98008021 98008237 -184185427 - MER65A LTR ERV1 -239 206 1 2528 101 22 0 chr1 98008278 98008634 -184185030 + THE1B LTR MaLR 1 364 0 9907 105 46 31 chr1 98008634 98010191 -184183473 + THE1B-int LTR MaLR 1 1580 0 2456 91 5 57 chr1 98010191 98010575 -184183089 + THE1B LTR MaLR 1 364 0 1654 135 23 8 chr1 98011242 98011501 -184182163 + AluJo SINE Alu 1 263 -49 23 0 0 0 chr1 98011501 98011524 -184182140 + AT_rich Low_complexity Low_complexity 1 23 0 2049 119 14 0 chr1 98011699 98012028 -184181636 + AluSx SINE Alu 1 333 0 948 233 72 11 chr1 98012589 98012868 -184180796 - L1MB5 LINE L1 -867 5279 4984 23 0 0 0 chr1 98014631 98014654 -184179010 + AT_rich Low_complexity Low_complexity 1 23 0 245 190 25 76 chr1 98015565 98015644 -184178020 - LTR33A LTR ERVL -3 520 446 538 308 60 0 chr1 98015659 98015841 -184177823 - LTR33A LTR ERVL -249 274 82 589 220 51 51 chr1 98016144 98016321 -184177343 + MER5B DNA MER1_type 2 178 0 4410 69 70 10 chr1 98017177 98017789 -184175875 + SVA Other Other 19 667 -719 27 62 0 0 chr1 98019161 98019209 -184174455 + AT_rich Low_complexity Low_complexity 1 48 0 23 101 0 0 chr1 98021260 98021339 -184172325 + AT_rich Low_complexity Low_complexity 1 79 0 611 310 77 41 chr1 98021578 98021917 -184171747 + L3 LINE CR1 1216 1566 -11 2071 121 0 0 chr1 98022293 98022583 -184171081 - AluSx SINE Alu -22 290 1 1866 166 27 18 chr1 98022749 98023086 -184170578 + MER2 DNA MER2_type 6 345 0 1889 143 0 52 chr1 98024053 98024381 -184169283 - AluJb SINE Alu -1 311 1 2371 75 0 0 chr1 98024480 98024774 -184168890 + AluY SINE Alu 1 294 -17 2099 107 4 0 chr1 98024789 98025069 -184168595 + AluSp SINE Alu 11 291 -22 21 57 0 0 chr1 98027143 98027178 -184166486 + AT_rich Low_complexity Low_complexity 1 35 0 384 301 98 16 chr1 98027888 98028081 -184165583 + MIR SINE MIR 48 256 -6 323 371 41 6 chr1 98029082 98029252 -184164412 + L3 LINE CR1 1399 1574 -3 2176 106 10 0 chr1 98031410 98031703 -184161961 - AluSx SINE Alu -16 296 1 2061 227 84 53 chr1 98031703 98032739 -184160925 - L1ME LINE L1 -560 5606 4543 1219 250 50 10 chr1 98032843 98033259 -184160405 - L1ME LINE L1 -3549 2597 2165 208 163 0 23 chr1 98033677 98033720 -184159944 - MER5B DNA MER1_type -31 147 106 2054 141 0 0 chr1 98035006 98035296 -184158368 + AluJb SINE Alu 1 290 -22 497 211 168 19 chr1 98035912 98036073 -184157591 + MER5A DNA MER1_type 5 189 0 21 0 0 0 chr1 98036930 98036951 -184156713 + AT_rich Low_complexity Low_complexity 1 21 0 9922 62 12 1 chr1 98037150 98038711 -184154953 - L1P3 LINE L1 -515 5639 4064 827 117 19 102 chr1 98038711 98038916 -184154748 - Tigger2 DNA MER2_type -74 2644 2457 670 144 8 53 chr1 98038929 98039061 -184154603 - FLAM_A SINE Alu -7 126 1 1043 150 55 35 chr1 98039064 98039264 -184154400 - Tigger2 DNA MER2_type -242 2476 2273 433 104 45 15 chr1 98039254 98039321 -184154343 - Tigger2 DNA MER2_type -2649 69 1 * 2051 134 0 3 chr1 98040373 98040663 -184153001 + AluJb SINE Alu 1 289 -23 2338 91 0 0 chr1 98041513 98041811 -184151853 + AluSg1 SINE Alu 1 298 -11 206 286 0 0 chr1 98042049 98042126 -184151538 + (TA)n Simple_repeat Simple_repeat 2 78 0 23 0 0 0 chr1 98042393 98042416 -184151248 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr1 98042878 98042907 -184150757 + (TTTTTG)n Simple_repeat Simple_repeat 6 34 0 229 295 49 0 chr1 98043399 98043460 -184150204 + L2 LINE L2 3250 3313 0 22 0 0 0 chr1 98045121 98045143 -184148521 + AT_rich Low_complexity Low_complexity 1 22 0 2119 108 11 0 chr1 98045224 98045510 -184148154 - AluSq SINE Alu -5 308 20 431 265 175 26 chr1 98046158 98046347 -184147317 + L1MC4 LINE L1 7462 7678 -364 659 261 21 26 chr1 98046351 98046585 -184147079 + L1MC4 LINE L1 7810 8042 0 263 274 47 66 chr1 98047106 98047212 -184146452 - MER5A DNA MER1_type -77 112 9 971 300 135 14 chr1 98047307 98047811 -184145853 + L2 LINE L2 2752 3311 -2 1994 114 3 36 chr1 98049195 98049501 -184144163 - AluSx SINE Alu -16 296 1 1282 167 58 97 chr1 98049819 98050130 -184143534 + AluJo SINE Alu 1 299 -13 2607 180 19 4 chr1 98050564 98051042 -184142622 + L1 LINE L1 13 497 -7068 * 3672 200 95 3 chr1 98051027 98051793 -184141871 + L1 LINE L1 3808 4675 -2890 2080 74 55 4 chr1 98051793 98052064 -184141600 + AluSc SINE Alu 25 309 0 3672 200 95 3 chr1 98052064 98052220 -184141444 + L1 LINE L1 4675 4815 -2750 24 75 0 0 chr1 98053601 98053641 -184140023 + AT_rich Low_complexity Low_complexity 1 40 0 309 222 0 0 chr1 98054134 98054233 -184139431 + CT-rich Low_complexity Low_complexity 1 99 0 584 103 0 0 chr1 98054233 98054311 -184139353 - AluJ/FLAM SINE Alu -234 78 1 24 0 0 0 chr1 98054561 98054585 -184139079 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr1 98054670 98054695 -184138969 + AT_rich Low_complexity Low_complexity 1 25 0 1033 207 62 9 chr1 98055597 98055824 -184137840 + MER8 DNA MER2_type 1 239 0 22 35 0 0 chr1 98056328 98056357 -184137307 + AT_rich Low_complexity Low_complexity 1 29 0 581 314 15 10 chr1 98057282 98057486 -184136178 + MIR SINE MIR 31 235 -27 1558 213 57 30 chr1 98057744 98058181 -184135483 - L1ME1 LINE L1 -268 5898 5450 297 295 74 0 chr1 98059641 98059736 -184133928 - L2 LINE L2 -22 3291 3190 892 301 98 28 chr1 98060005 98060628 -184133036 + L2 LINE L2 2655 3313 0 23 0 0 0 chr1 98061543 98061566 -184132098 + AT_rich Low_complexity Low_complexity 1 23 0 193 305 29 57 chr1 98062517 98062622 -184131042 + L2 LINE L2 2653 2754 -560 375 347 70 84 chr1 98062775 98063118 -184130546 + L2 LINE L2 2935 3272 0 1023 266 25 12 chr1 98063758 98063999 -184129665 - MIR SINE MIR 0 262 19 948 167 123 35 chr1 98065051 98065125 -184128539 - Charlie1 DNA MER1_type 0 2761 2695 225 0 0 0 chr1 98065125 98065150 -184128514 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 948 167 123 35 chr1 98065150 98065392 -184128272 - Charlie1 DNA MER1_type -66 2695 2417 180 0 0 0 chr1 98065393 98065413 -184128251 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3099 148 31 30 chr1 98065427 98065965 -184127699 - Charlie1 DNA MER1_type -303 2458 1917 1087 181 54 5 chr1 98065965 98066170 -184127494 - MER20 DNA MER1_type 0 219 5 3099 148 31 30 chr1 98066170 98066273 -184127391 - Charlie1 DNA MER1_type -844 1917 1816 2131 101 0 0 chr1 98066784 98067097 -184126567 - AluSc SINE Alu 0 313 1 952 191 4 112 chr1 98068130 98068186 -184125478 + MER58A DNA MER1_type 1 61 -2359 2195 108 14 0 chr1 98068186 98068483 -184125181 - AluSx SINE Alu -11 301 1 952 191 4 112 chr1 98068483 98068604 -184125060 + MER58A DNA MER1_type 61 193 -2227 2296 136 71 22 chr1 98068604 98069010 -184124654 - MSTB LTR MaLR 0 426 1 7655 167 63 51 chr1 98069010 98070061 -184123603 - MSTB-int LTR MaLR 0 1651 614 1555 173 99 0 chr1 98070061 98070333 -184123331 + AluJb SINE Alu 5 303 -9 7655 167 63 51 chr1 98070333 98070562 -184123102 - MSTB-int LTR MaLR -1037 614 389 2486 81 7 0 chr1 98070562 98070871 -184122793 - AluSx SINE Alu -1 311 1 7655 167 63 51 chr1 98070871 98071220 -184122444 - MSTB-int LTR MaLR -1262 389 1 2480 158 12 26 chr1 98071222 98071454 -184122210 - MSTB LTR MaLR -2 424 198 2176 101 3 3 chr1 98071454 98071763 -184121901 - AluSp SINE Alu 0 309 1 2480 158 12 26 chr1 98071763 98071959 -184121705 - MSTB LTR MaLR -228 198 1 952 191 4 112 chr1 98071959 98072027 -184121637 + MER58A DNA MER1_type 193 224 0 382 277 6 102 chr1 98072095 98072261 -184121403 - MIR3 SINE MIR -11 197 48 21 0 0 0 chr1 98072340 98072361 -184121303 + AT_rich Low_complexity Low_complexity 1 21 0 192 233 0 23 chr1 98073105 98073148 -184120516 + L2 LINE L2 3201 3242 -71 1039 168 76 36 chr1 98075267 98075517 -184118147 + MIR SINE MIR 2 261 -1 21 0 0 0 chr1 98076048 98076069 -184117595 + AT_rich Low_complexity Low_complexity 1 21 0 1073 195 5 5 chr1 98076320 98076525 -184117139 - MER58A DNA MER1_type 0 224 20 585 213 31 25 chr1 98076876 98077036 -184116628 - MER58A DNA MER1_type -44 180 20 195 42 0 0 chr1 98077554 98077578 -184116086 + (TA)n Simple_repeat Simple_repeat 2 25 0 183 255 43 21 chr1 98079652 98079699 -184113965 + MIR3 SINE MIR 8 55 -153 230 163 0 41 chr1 98082362 98082411 -184111253 - L2 LINE L2 -16 3297 3251 231 275 184 0 chr1 98082476 98082585 -184111079 - MIR SINE MIR -26 236 108 549 225 148 30 chr1 98082703 98082872 -184110792 + MER5A DNA MER1_type 1 189 0 291 176 57 146 chr1 98082882 98083021 -184110643 - MIR SINE MIR -65 143 17 265 219 14 27 chr1 98083790 98083863 -184109801 - MIR SINE MIR -12 250 179 709 182 74 27 chr1 98083865 98084013 -184109651 - FRAM SINE Alu -21 155 1 673 240 82 0 chr1 98084013 98084184 -184109480 - MIR SINE MIR -70 192 8 803 104 0 0 chr1 98084245 98084351 -184109313 + AluSq/x SINE Alu 1 106 -207 1856 88 0 0 chr1 98084351 98084579 -184109085 + AluSx SINE Alu 63 290 -22 233 377 22 14 chr1 98086612 98086750 -184106914 + L2 LINE L2 2714 2852 -462 265 326 105 33 chr1 98086977 98087158 -184106506 + MIR SINE MIR 23 216 -46 210 276 35 35 chr1 98087323 98087410 -184106254 + MIR SINE MIR 71 157 -105 21 0 0 0 chr1 98087965 98087986 -184105678 + AT_rich Low_complexity Low_complexity 1 21 0 2347 102 0 0 chr1 98088178 98088472 -184105192 - AluSc SINE Alu -15 294 1 2143 111 0 19 chr1 98088474 98088781 -184104883 - AluSx SINE Alu -11 301 1 342 0 0 0 chr1 98088950 98088988 -184104676 + (TG)n Simple_repeat Simple_repeat 2 39 0 685 219 51 98 chr1 98089019 98089293 -184104371 + MLT1D LTR MaLR 12 272 -233 626 157 9 0 chr1 98089300 98089415 -184104249 + MLT1D LTR MaLR 387 502 -3 2127 104 7 7 chr1 98092569 98092867 -184100797 + AluSc SINE Alu 7 304 -5 210 71 0 0 chr1 98094015 98094043 -184099621 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1620 164 10 3 chr1 98094055 98094360 -184099304 - L1MB3 LINE L1 0 6183 5877 309 95 0 0 chr1 98094649 98094691 -184098973 - MER46A DNA MER2_type 0 236 195 966 176 133 9 chr1 98094780 98094990 -184098674 - MER46A DNA MER2_type 0 236 1 2312 101 7 0 chr1 98095688 98095994 -184097670 - AluSq SINE Alu -5 308 1 421 312 82 0 chr1 98096032 98096202 -184097462 + MIR SINE MIR 10 193 -69 226 213 21 0 chr1 98096379 98096426 -184097238 - MER5B DNA MER1_type -4 174 127 24 32 0 0 chr1 98097113 98097144 -184096520 + AT_rich Low_complexity Low_complexity 1 31 0 440 254 107 23 chr1 98097575 98097752 -184095912 + MER91A DNA MER1_type 1 192 -4 396 349 64 32 chr1 98097840 98098152 -184095512 - L2 LINE L2 -41 3231 2910 348 294 129 18 chr1 98100057 98100220 -184093444 - MIR3 SINE MIR -12 196 16 215 398 28 0 chr1 98100986 98101094 -184092570 - MIR3 SINE MIR -1 207 97 204 333 153 18 chr1 98101135 98101246 -184092418 + MIR SINE MIR 56 181 -81 252 315 43 11 chr1 98101268 98101360 -184092304 - MIR3 SINE MIR -110 98 4 591 257 76 33 chr1 98103010 98103220 -184090444 + MIR SINE MIR 43 261 -1 200 224 15 0 chr1 98104407 98104474 -184089190 + (TA)n Simple_repeat Simple_repeat 1 68 0 24 32 0 0 chr1 98106342 98106373 -184087291 + AT_rich Low_complexity Low_complexity 1 31 0 207 186 23 0 chr1 98107110 98107153 -184086511 + G-rich Low_complexity Low_complexity 4 47 0 3040 277 54 21 chr1 98108252 98109147 -184084517 - MER45C DNA AcHobo -22 931 8 302 333 123 0 chr1 98109658 98109772 -184083892 - L2 LINE L2 0 3313 3186 246 220 0 0 chr1 98112070 98112120 -184081544 + L1MCb LINE L1 375 424 -5621 246 128 0 0 chr1 98112922 98112961 -184080703 + (ATG)n Simple_repeat Simple_repeat 2 40 0 570 228 228 16 chr1 98112971 98113160 -184080504 - MIR SINE MIR -28 234 6 310 267 158 18 chr1 98113324 98113489 -184080175 - L2 LINE L2 -7 3306 3119 2354 204 26 67 chr1 98113538 98114108 -184079556 + MLT2B3 LTR ERVL 1 547 -7 763 213 30 6 chr1 98114114 98114278 -184079386 - MIR SINE MIR -34 228 61 3710 144 23 17 chr1 98114594 98115234 -184078430 - L1MA7 LINE L1 -53 6238 5595 247 150 25 0 chr1 98115421 98115461 -184078203 - MIR SINE MIR -61 147 107 318 167 0 0 chr1 98116066 98116126 -184077538 + CT-rich Low_complexity Low_complexity 4 63 0 1592 189 3 26 chr1 98116127 98116439 -184077225 - AluJo SINE Alu -7 305 1 180 77 0 0 chr1 98116549 98116575 -184077089 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 22 0 0 0 chr1 98120012 98120034 -184073630 + AT_rich Low_complexity Low_complexity 1 22 0 1036 171 11 0 chr1 98120479 98120666 -184072998 - MER53 DNA DNA 0 189 1 341 311 61 45 chr1 98122381 98122513 -184071151 - L2 LINE L2 0 3272 3139 230 211 0 39 chr1 98126510 98126562 -184067102 + LTR3 LTR ERVK 262 311 -121 199 346 64 51 chr1 98126749 98126905 -184066759 - L2 LINE L2 -10 3262 3105 274 180 60 0 chr1 98126922 98126972 -184066692 + L2 LINE L2 3261 3313 0 201 217 36 72 chr1 98127459 98127542 -184066122 + CT-rich Low_complexity Low_complexity 2 81 0 908 226 6 0 chr1 98127986 98128163 -184065501 - MIR SINE MIR -25 237 60 1421 282 14 21 chr1 98128190 98128619 -184065045 + LTR16A LTR ERVL 25 450 0 3597 274 87 17 chr1 98128619 98129779 -184063885 + HERV16 LTR ERVL 1 1241 -3755 830 308 38 31 chr1 98129832 98130259 -184063405 + ERVL LTR ERVL 3346 3814 -1923 1590 314 69 32 chr1 98130397 98131575 -184062089 + ERVL LTR ERVL 3837 5323 -441 569 339 56 53 chr1 98131834 98132153 -184061511 - L2 LINE L2 -5 3267 2948 287 358 24 0 chr1 98132195 98132318 -184061346 - L2 LINE L2 -466 2848 2723 289 325 25 0 chr1 98134257 98134337 -184059327 + MIR3 SINE MIR 116 197 -11 2589 157 60 61 chr1 98134926 98135303 -184058361 - MLT2B1 LTR ERVL 0 520 142 1406 203 3 7 chr1 98135303 98135613 -184058051 - AluJo SINE Alu 0 309 1 2589 157 60 61 chr1 98135613 98135755 -184057909 - MLT2B1 LTR ERVL -378 142 1 207 296 0 0 chr1 98135992 98136046 -184057618 + L2 LINE L2 3136 3189 -83 487 259 64 33 chr1 98136192 98136393 -184057271 - MIR SINE MIR -14 248 40 548 261 67 17 chr1 98138965 98139145 -184054519 + MER5A DNA MER1_type 1 189 0 199 289 0 19 chr1 98141756 98141808 -184051856 + MIR SINE MIR 163 213 -49 227 324 88 37 chr1 98143200 98143336 -184050328 - L2 LINE L2 -226 3087 2945 * 360 330 8 8 chr1 98143330 98143448 -184050216 - MIR SINE MIR -3 259 142 997 182 35 52 chr1 98143460 98143691 -184049973 - MIR SINE MIR -8 254 28 253 261 15 0 chr1 98144497 98144562 -184049102 - MIR SINE MIR -120 142 77 2559 20 0 7 chr1 98144789 98145086 -184048578 + AluY SINE Alu 1 295 -16 262 261 88 121 chr1 98145229 98145444 -184048220 - L2 LINE L2 0 3272 3065 333 252 54 22 chr1 98145491 98145618 -184048046 - MIR SINE MIR -33 175 45 1370 207 153 37 chr1 98145709 98146115 -184047549 + MSTB2 LTR MaLR 4 456 -1 742 315 15 0 chr1 98147722 98147919 -184045745 - MIR SINE MIR -37 225 26 358 252 73 57 chr1 98148222 98148345 -184045319 + L2 LINE L2 3184 3308 -5 212 323 52 61 chr1 98148845 98149074 -184044590 - L2 LINE L2 -1263 2051 1825 244 100 86 71 chr1 98151925 98151995 -184041669 - LTR67 LTR ERVL -10 547 477 234 45 68 0 chr1 98152147 98152191 -184041473 + CT-rich Low_complexity Low_complexity 5 51 0 262 193 0 18 chr1 98152310 98152367 -184041297 - MLT1K LTR MaLR -347 241 186 270 116 0 0 chr1 98153452 98153495 -184040169 + (CAA)n Simple_repeat Simple_repeat 3 45 0 484 240 41 25 chr1 98153813 98153934 -184039730 + L2 LINE L2 3191 3313 0 1232 189 50 53 chr1 98154035 98154316 -184039348 + AluJb SINE Alu 25 304 -8 639 315 131 55 chr1 98154444 98155128 -184038536 + L2 LINE L2 2486 3248 -24 1851 130 0 0 chr1 98155128 98155382 -184038282 - AluSx SINE Alu -20 292 39 639 315 131 55 chr1 98155382 98155410 -184038254 + L2 LINE L2 3248 3272 0 209 397 84 6 chr1 98155517 98155696 -184037968 + MIR SINE MIR 20 212 -50 248 365 10 0 chr1 98155728 98155832 -184037832 - MIR3 SINE MIR -18 190 86 191 272 168 40 chr1 98155863 98155988 -184037676 - MIR SINE MIR 0 262 122 228 275 14 14 chr1 98156537 98156606 -184037058 + CT-rich Low_complexity Low_complexity 3 71 0 518 250 116 62 chr1 98156975 98157199 -184036465 - MIR SINE MIR -25 237 2 2233 112 0 3 chr1 98157246 98157551 -184036113 + AluSx SINE Alu 1 304 -8 28 48 0 0 chr1 98158704 98158746 -184034918 + AT_rich Low_complexity Low_complexity 1 42 0 388 269 104 8 chr1 98159043 98159177 -184034487 + L2 LINE L2 3167 3313 0 478 244 177 74 chr1 98159198 98159469 -184034195 + L2 LINE L2 2920 3218 -95 332 209 35 58 chr1 98159681 98159767 -184033897 + L2 LINE L2 3230 3313 0 902 246 133 70 chr1 98160270 98160734 -184032930 + MLT1H LTR MaLR 4 545 -4 327 333 122 0 chr1 98160736 98160883 -184032781 + MIR SINE MIR 92 256 -6 21 36 0 0 chr1 98162924 98162952 -184030712 + AT_rich Low_complexity Low_complexity 1 28 0 517 237 59 24 chr1 98163072 98163241 -184030423 - HAL1b LINE L1 -411 937 763 180 0 0 0 chr1 98163623 98163643 -184030021 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 201 74 0 0 chr1 98163642 98163669 -184029995 + (CA)n Simple_repeat Simple_repeat 1 27 0 1374 288 108 30 chr1 98163684 98164296 -184029368 + MER39 LTR ERV1 6 707 0 819 261 92 96 chr1 98164296 98165057 -184028607 - HAL1 LINE L1 -908 1599 842 244 278 0 0 chr1 98165377 98165431 -184028233 + MER94 DNA DNA 1 54 -80 196 286 76 105 chr1 98166655 98166826 -184026838 - L2 LINE L2 -203 3069 2904 200 255 21 0 chr1 98167137 98167184 -184026480 - L2 LINE L2 -2 3270 3223 256 264 35 35 chr1 98167438 98167525 -184026139 + MLT1K LTR MaLR 182 268 -320 340 275 42 17 chr1 98167726 98167846 -184025818 + MLT1K LTR MaLR 466 588 0 374 324 22 76 chr1 98167896 98168121 -184025543 - L2 LINE L2 -200 3072 2860 225 277 85 0 chr1 98169354 98169448 -184024216 - L2 LINE L2 -11 3302 3201 467 250 189 20 chr1 98169471 98169667 -184023997 + MIR SINE MIR 31 259 -3 227 301 98 38 chr1 98169717 98169850 -184023814 - L2 LINE L2 -181 3091 2951 1771 128 27 131 chr1 98171035 98171410 -184022254 + MER44D DNA MER2_type 4 609 0 539 357 41 4 chr1 98171468 98171712 -184021952 + MIR SINE MIR 10 262 0 332 332 33 52 chr1 98175157 98175292 -184018372 + L2 LINE L2 2579 2710 -604 2239 175 56 14 chr1 98175292 98175738 -184017926 + MLT1C LTR MaLR 3 467 0 332 332 33 52 chr1 98175738 98175813 -184017851 + L2 LINE L2 2710 2785 -529 522 133 3 24 chr1 98175820 98175919 -184017745 + MLT1B LTR MaLR 321 390 0 625 306 85 36 chr1 98175925 98176456 -184017208 + L2 LINE L2 2716 3272 0 1219 246 83 13 chr1 98176856 98177242 -184016422 + MLT1J1 LTR MaLR 1 413 -33 248 318 36 45 chr1 98177755 98177865 -184015799 + L2 LINE L2 3164 3272 0 276 276 121 35 chr1 98178157 98178273 -184015391 + MLT1I LTR MaLR 284 409 0 880 294 72 30 chr1 98178273 98178678 -184014986 + MLT1L LTR MaLR 22 443 -172 309 326 130 7 chr1 98178725 98178863 -184014801 - MIR3 SINE MIR -36 172 18 319 277 92 0 chr1 98178872 98178991 -184014673 + MER117 DNA MER1_type 2 131 -66 912 253 105 79 chr1 98179095 98179561 -184014103 - MLT1E LTR MaLR 0 593 116 311 313 67 45 chr1 98180812 98180991 -184012673 + L3 LINE CR1 208 390 -1187 280 217 0 17 chr1 98182316 98182376 -184011288 - MIR SINE MIR -84 178 120 438 247 74 31 chr1 98182953 98183115 -184010549 - MIR SINE MIR -34 228 60 279 79 0 0 chr1 98183521 98183559 -184010105 + (TA)n Simple_repeat Simple_repeat 2 39 0 2093 125 3 0 chr1 98183559 98183846 -184009818 - AluSx SINE Alu -20 292 5 339 283 33 11 chr1 98184040 98184132 -184009532 + MIR3 SINE MIR 93 186 -22 2871 13 0 0 chr1 98185325 98185638 -184008026 + AluYb8 SINE Alu 1 313 -5 24 53 0 0 chr1 98188054 98188092 -184005572 + AT_rich Low_complexity Low_complexity 1 38 0 259 338 61 61 chr1 98188510 98188658 -184005006 - L2 LINE L2 0 3272 3125 256 250 12 12 chr1 98188756 98188840 -184004824 + GA-rich Low_complexity Low_complexity 2 85 0 576 290 17 6 chr1 98190879 98191055 -184002609 + MIR SINE MIR 85 262 0 462 264 28 60 chr1 98191617 98191799 -184001865 - MIR SINE MIR -50 212 37 316 325 141 43 chr1 98192449 98192726 -184000938 - L2 LINE L2 -82 3190 2887 1118 221 53 89 chr1 98192984 98193377 -184000287 - MLT2D LTR ERVL -2 412 34 6313 78 27 1 chr1 98193493 98194891 -183998773 - L1PA10 LINE L1 -12 6156 4711 375 282 0 27 chr1 98194940 98195050 -183998614 + MLT1G1-int LTR MaLR 9 102 -1269 439 251 46 128 chr1 98196010 98196376 -183997288 + MLT1G1-int LTR MaLR 1035 1370 -1 1026 263 141 50 chr1 98196412 98196831 -183996833 + MLT1G1 LTR MaLR 56 528 -67 648 49 0 0 chr1 98196831 98196912 -183996752 + L1PA5 LINE L1 6073 6153 -1 1026 263 141 50 chr1 98196912 98196987 -183996677 + MLT1G1 LTR MaLR 528 595 0 415 308 17 0 chr1 98196987 98197107 -183996557 + MER117 DNA MER1_type 44 165 -32 268 276 0 118 chr1 98197614 98197741 -183995923 - L2 LINE L2 -35 3278 3167 841 61 69 0 chr1 98197860 98197991 -183995673 - L1MB7 LINE L1 0 6184 6045 494 296 30 44 chr1 98198198 98198401 -183995263 - MIR SINE MIR -14 248 49 372 313 23 8 chr1 98200785 98200916 -183992748 + MIR SINE MIR 114 246 -16 236 222 0 0 chr1 98201230 98201275 -183992389 - MLT1D LTR MaLR -60 445 401 279 260 114 49 chr1 98201719 98201842 -183991822 - MIR SINE MIR -50 212 82 515 148 0 0 chr1 98201848 98201929 -183991735 - MLT1D LTR MaLR 0 505 425 607 215 114 19 chr1 98201999 98202157 -183991507 - MLT1D LTR MaLR -332 173 1 205 330 169 8 chr1 98203023 98203141 -183990523 - MIR SINE MIR -93 169 33 426 242 269 26 chr1 98204442 98204804 -183988860 + L2 LINE L2 2610 3059 -254 354 23 0 0 chr1 98204809 98204852 -183988812 + (CA)n Simple_repeat Simple_repeat 1 43 0 275 378 93 0 chr1 98205485 98205636 -183988028 - L2 LINE L2 0 3272 3108 564 282 13 0 chr1 98205651 98205807 -183987857 - MIR SINE MIR -21 241 84 526 286 53 12 chr1 98206608 98206779 -183986885 + MIR3 SINE MIR 26 203 -5 1014 155 121 19 chr1 98207035 98207242 -183986422 + MSTA LTR MaLR 1 228 -200 1130 296 94 12 chr1 98207424 98207839 -183985825 - MLT1J2 LTR MaLR 0 450 2 959 259 47 0 chr1 98209229 98209465 -183984199 + MIR SINE MIR 1 247 -15 480 259 118 0 chr1 98210858 98210993 -183982671 + MIR SINE MIR 23 173 -89 577 181 16 39 chr1 98210993 98211120 -183982544 + MER31B LTR ERV1 1 124 -342 754 100 55 0 chr1 98211132 98211242 -183982422 + AluSq/x SINE Alu 2 117 -196 214 300 38 12 chr1 98211375 98211455 -183982209 - MIR SINE MIR -62 146 65 190 344 94 68 chr1 98211549 98211741 -183981923 + MIR3 SINE MIR 3 199 -9 4559 125 14 95 chr1 98211830 98211986 -183981678 - L1MC3 LINE L1 0 7785 7618 2234 94 3 0 chr1 98211986 98212272 -183981392 + AluSp SINE Alu 1 287 -26 4559 125 14 95 chr1 98212272 98212830 -183980834 - L1MC3 LINE L1 -167 7618 7159 2301 79 0 14 chr1 98212830 98213121 -183980543 + AluY SINE Alu 1 287 -24 4559 125 14 95 chr1 98213121 98213324 -183980340 - L1MC3 LINE L1 -626 7159 6941 940 233 166 39 chr1 98213348 98213734 -183979930 + MLT1J LTR MaLR 70 504 -7 2574 63 0 9 chr1 98213827 98214143 -183979521 + AluSq SINE Alu 1 313 0 1080 144 0 62 chr1 98214580 98214621 -183979043 + MLT1K LTR MaLR 1 43 -347 1989 123 24 7 chr1 98214621 98214914 -183978750 + AluSx SINE Alu 1 298 -14 1080 144 0 62 chr1 98214914 98215066 -183978598 + MLT1K LTR MaLR 43 182 -208 995 204 51 15 chr1 98215403 98215599 -183978065 - MER3 DNA MER1_type -4 205 3 2605 136 63 5 chr1 98215728 98216170 -183977494 - L1MB3 LINE L1 -2 6181 5714 1231 245 114 29 chr1 98216190 98216603 -183977061 + MLT1K LTR MaLR 141 588 0 814 355 68 17 chr1 98216617 98217254 -183976410 - L2 LINE L2 -601 2713 2045 497 314 46 10 chr1 98217408 98217602 -183976062 + MIR SINE MIR 45 245 -17 393 22 0 0 chr1 98218306 98218352 -183975312 + (CA)n Simple_repeat Simple_repeat 1 46 0 35 0 0 0 chr1 98219190 98219225 -183974439 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr1 98219884 98219921 -183973743 + AT_rich Low_complexity Low_complexity 1 37 0 210 292 15 0 chr1 98221387 98221452 -183972212 + (TA)n Simple_repeat Simple_repeat 2 67 0 460 265 133 51 chr1 98221837 98222071 -183971593 - MIR SINE MIR 0 262 10 527 293 89 21 chr1 98222809 98223000 -183970664 - MIR SINE MIR -23 239 36 629 267 31 81 chr1 98223003 98223261 -183970403 - MIR SINE MIR -2 260 16 2840 74 3 69 chr1 98223604 98223831 -183969833 - THE1B LTR MaLR 0 364 171 1803 156 0 0 chr1 98223831 98224116 -183969548 + AluSx SINE Alu 23 307 0 2840 74 3 69 chr1 98224116 98224277 -183969387 - THE1B LTR MaLR -193 171 1 346 372 32 6 chr1 98224419 98224575 -183969089 + L2 LINE L2 3109 3268 -4 2144 150 73 0 chr1 98224859 98225199 -183968465 + MLT1A1 LTR MaLR 1 365 0 634 257 28 37 chr1 98225763 98225977 -183967687 + MIR SINE MIR 2 213 -49 671 82 0 0 chr1 98228058 98228143 -183965521 + AluSc SINE Alu 209 293 -16 2092 124 3 37 chr1 98228936 98229259 -183964405 + AluSq SINE Alu 1 312 -1 714 243 111 7 chr1 98230368 98230656 -183963008 - MER113 DNA MER1_type? 0 521 204 533 252 52 0 chr1 98230711 98230846 -183962818 - MIR SINE MIR 0 262 121 1509 160 0 17 chr1 98231012 98231249 -183962415 - MER46A DNA MER2_type 0 236 4 1834 163 0 13 chr1 98231326 98231632 -183962032 - AluJo SINE Alu -10 302 1 1323 161 5 14 chr1 98232888 98233105 -183960559 + AluJo SINE Alu 1 215 -97 235 238 12 12 chr1 98234239 98234323 -183959341 + CT-rich Low_complexity Low_complexity 4 87 0 213 250 39 0 chr1 98234347 98234399 -183959265 + CT-rich Low_complexity Low_complexity 4 57 0 699 251 70 0 chr1 98234694 98234881 -183958783 - MIR SINE MIR 0 262 63 477 289 42 18 chr1 98234899 98235065 -183958599 - Charlie8 DNA MER1_type -2247 170 1 443 312 57 6 chr1 98235140 98235297 -183958367 + MIR SINE MIR 21 185 -77 373 300 60 33 chr1 98235488 98235638 -183958026 - MIR SINE MIR -54 154 1 2014 128 10 14 chr1 98236044 98236341 -183957323 + AluSx SINE Alu 1 296 -16 324 120 0 0 chr1 98237062 98237112 -183956552 + (TG)n Simple_repeat Simple_repeat 2 51 0 1116 255 100 65 chr1 98238961 98239015 -183954649 - MLT1L LTR MaLR -6 609 558 2017 117 0 11 chr1 98239015 98239298 -183954366 + AluSx SINE Alu 23 302 -10 1116 255 100 65 chr1 98239298 98239831 -183953833 - MLT1L LTR MaLR -57 558 1 282 375 26 7 chr1 98240051 98240203 -183953461 + MIR3 SINE MIR 47 201 -7 410 253 35 70 chr1 98241288 98241507 -183952157 + MLT1L LTR MaLR 1 252 -363 1482 291 133 18 chr1 98241527 98242203 -183951461 + L2 LINE L2 1907 2660 -654 193 121 0 0 chr1 98242383 98242416 -183951248 + L2 LINE L2 3240 3272 0 1636 212 47 70 chr1 98243597 98244154 -183949510 - MLT1E3 LTR MaLR -2 622 1 27 0 0 0 chr1 98245025 98245052 -183948612 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 98246585 98246606 -183947058 + AT_rich Low_complexity Low_complexity 1 21 0 1339 147 92 55 chr1 98247430 98247722 -183945942 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr1 98248384 98248405 -183945259 + AT_rich Low_complexity Low_complexity 1 21 0 522 197 55 16 chr1 98249038 98249165 -183944499 - MIR3 SINE MIR -10 198 67 291 28 0 0 chr1 98249258 98249294 -183944370 + (CA)n Simple_repeat Simple_repeat 2 37 0 295 319 150 0 chr1 98251223 98251336 -183942328 - L2 LINE L2 -1 3271 3142 229 387 36 0 chr1 98252031 98252142 -183941522 + MIR SINE MIR 81 195 -67 439 282 94 29 chr1 98252169 98252339 -183941325 + MIR SINE MIR 40 220 -42 328 236 220 26 chr1 98252668 98252859 -183940805 + MIR SINE MIR 29 256 -6 226 246 35 0 chr1 98253247 98253304 -183940360 - MIR SINE MIR -115 147 89 202 245 0 61 chr1 98253358 98253407 -183940257 - MIR SINE MIR -138 70 25 898 219 56 17 chr1 98256357 98256590 -183937074 - MER96B DNA MER1_type? -175 242 1 266 278 124 10 chr1 98256599 98256696 -183936968 + MIR SINE MIR 105 212 -50 25 51 0 0 chr1 98260918 98260957 -183932707 + AT_rich Low_complexity Low_complexity 1 39 0 189 147 0 0 chr1 98261087 98261121 -183932543 + (T)n Simple_repeat Simple_repeat 1 34 0 514 238 131 30 chr1 98262120 98262288 -183931376 + MIR SINE MIR 78 262 0 21 0 0 0 chr1 98266834 98266855 -183926809 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 98269505 98269528 -183924136 + (TG)n Simple_repeat Simple_repeat 2 24 0 235 314 255 0 chr1 98271938 98272091 -183921573 + MIR SINE MIR 35 226 -36 520 218 131 15 chr1 98272728 98272934 -183920730 + L1ME4a LINE L1 5637 5866 -255 180 0 0 0 chr1 98272957 98272977 -183920687 + (TA)n Simple_repeat Simple_repeat 2 21 0 275 165 76 13 chr1 98273078 98273157 -183920507 + L1ME4a LINE L1 6037 6120 -1 398 292 70 35 chr1 98274010 98274181 -183919483 + MLT1K LTR MaLR 412 588 0 195 69 0 0 chr1 98275393 98275422 -183918242 + (T)n Simple_repeat Simple_repeat 1 29 0 209 146 0 49 chr1 98277483 98277524 -183916140 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 223 161 0 65 chr1 98277682 98277744 -183915920 + C-rich Low_complexity Low_complexity 2 59 0 28 48 0 0 chr1 98277769 98277811 -183915853 + GC_rich Low_complexity Low_complexity 1 42 0 30 0 0 0 chr1 98278341 98278371 -183915293 + GC_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr1 98280577 98280610 -183913054 + GC_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 98282954 98282977 -183910687 + AT_rich Low_complexity Low_complexity 1 23 0 317 293 13 0 chr1 98283026 98283101 -183910563 + MIR3 SINE MIR 93 168 -40 1091 197 89 103 chr1 98284378 98284852 -183908812 + MLT1G LTR MaLR 1 492 -50 30 0 0 0 chr1 98284854 98284884 -183908780 + AT_rich Low_complexity Low_complexity 1 30 0 747 174 0 38 chr1 98284884 98285016 -183908648 - FLAM_C SINE Alu -3 130 4 331 161 16 16 chr1 98285016 98285078 -183908586 + MLT1G LTR MaLR 531 592 -3 285 332 32 34 chr1 98285215 98285380 -183908284 + MIR3 SINE MIR 37 201 -7 1035 292 92 16 chr1 98285596 98286149 -183907515 - L2 LINE L2 0 3313 2706 233 29 0 29 chr1 98286154 98286189 -183907475 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2182 72 0 45 chr1 98286191 98286483 -183907181 - AluY SINE Alu -32 279 1 459 307 161 20 chr1 98286679 98287083 -183906581 - L2 LINE L2 -383 2931 2471 4304 77 32 9 chr1 98287531 98288090 -183905574 + L1PA10 LINE L1 5594 6165 -3 243 0 0 0 chr1 98288554 98288581 -183905083 + (T)n Simple_repeat Simple_repeat 1 27 0 699 182 71 35 chr1 98288611 98288781 -183904883 + MIR SINE MIR 21 196 -66 * 727 237 30 6 chr1 98288771 98288940 -183904724 + MIR SINE MIR 12 184 -78 682 298 107 5 chr1 98289640 98289855 -183903809 - MIR SINE MIR -4 258 22 192 306 51 41 chr1 98290613 98290711 -183902953 + L2 LINE L2 3210 3308 -5 13089 70 6 4 chr1 98290799 98293279 -183900385 - L1PA7 LINE L1 -30 6124 3636 267 333 82 19 chr1 98293479 98293638 -183900026 + MIR3 SINE MIR 25 193 -15 247 0 0 73 chr1 98294240 98294281 -183899383 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 445 215 168 36 chr1 98294296 98294528 -183899136 - MIR SINE MIR 0 262 10 270 0 0 0 chr1 98295116 98295146 -183898518 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 677 233 109 10 chr1 98296477 98296679 -183896985 + MIR SINE MIR 4 225 -37 195 342 45 27 chr1 98296720 98296831 -183896833 - L2 LINE L2 -1 3312 3200 1086 122 0 0 chr1 98297369 98297525 -183896139 + AluSg/x SINE Alu 147 302 -10 390 365 90 3 chr1 98297531 98297819 -183895845 - L2 LINE L2 -23 3249 2937 2353 40 0 4 chr1 98298045 98298323 -183895341 - AluY SINE Alu -4 307 31 1988 141 24 0 chr1 98299413 98299711 -183893953 - AluSq SINE Alu -8 305 1 22 35 0 0 chr1 98299969 98299998 -183893666 + AT_rich Low_complexity Low_complexity 1 29 0 201 167 0 0 chr1 98300093 98300129 -183893535 + T-rich Low_complexity Low_complexity 1 36 0 2314 78 7 10 chr1 98300146 98300452 -183893212 + AluY SINE Alu 1 305 -6 18538 168 15 8 chr1 98300574 98301233 -183892431 - L1PA14 LINE L1 0 6161 5509 2104 127 17 0 chr1 98301233 98301533 -183892131 - AluSx SINE Alu -6 306 2 18538 168 15 8 chr1 98301533 98305470 -183888194 - L1PA14 LINE L1 -652 5509 1529 783 322 87 53 chr1 98305471 98306113 -183887551 - L1PA14 LINE L1 -968 1539 876 23 78 0 0 chr1 98306661 98306712 -183886952 + AT_rich Low_complexity Low_complexity 1 51 0 287 257 98 33 chr1 98306734 98306917 -183886747 - HAL1 LINE L1 0 2507 2313 484 295 148 53 chr1 98306966 98307231 -183886433 - HAL1 LINE L1 -187 2320 2082 803 183 8 0 chr1 98307231 98307362 -183886302 - FLAM_A SINE Alu 0 133 2 484 295 148 53 chr1 98307362 98307929 -183885735 - HAL1 LINE L1 -425 2082 1372 1744 232 61 22 chr1 98308059 98308696 -183884968 - L1M4 LINE L1 -3373 2773 2112 1521 218 155 30 chr1 98308829 98309507 -183884157 - LTR50 LTR ERVL 0 795 5 23 0 0 0 chr1 98309545 98309568 -183884096 + AT_rich Low_complexity Low_complexity 1 23 0 300 373 66 14 chr1 98309778 98309990 -183883674 - L2 LINE L2 -184 3088 2866 922 230 77 18 chr1 98313635 98313857 -183879807 + MIR SINE MIR 10 244 -18 2030 136 24 41 chr1 98314863 98315022 -183878642 + MLT1B LTR MaLR 5 165 -428 2337 98 11 53 chr1 98315022 98315145 -183878519 + THE1B LTR MaLR 3 130 -234 2015 158 3 0 chr1 98315145 98315448 -183878216 - AluSx SINE Alu -8 304 1 2337 98 11 53 chr1 98315448 98315702 -183877962 + THE1B LTR MaLR 130 364 0 2030 136 24 41 chr1 98315702 98315933 -183877731 + MLT1B LTR MaLR 165 593 0 307 270 101 0 chr1 98316344 98316433 -183877231 - MER63A DNA MER1_type -7 203 106 333 242 84 0 chr1 98316676 98316771 -183876893 - MER5A DNA MER1_type -61 128 26 222 37 0 0 chr1 98317895 98317922 -183875742 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 369 0 0 0 chr1 98318556 98318597 -183875067 + (TG)n Simple_repeat Simple_repeat 2 42 0 238 283 48 55 chr1 98318605 98318750 -183874914 + L1ME4a LINE L1 5974 6117 -4 336 326 0 0 chr1 98319320 98319415 -183874249 - MIR3 SINE MIR -16 192 98 1969 156 0 6 chr1 98319664 98319978 -183873686 - AluJb SINE Alu 0 312 1 491 418 37 70 chr1 98320067 98320084 -183873580 - L1MC4a LINE L1 -1893 5915 5899 2526 118 42 37 chr1 98320084 98320516 -183873148 + Tigger2a DNA MER2_type 1 434 0 491 418 37 70 chr1 98320516 98320900 -183872764 - L1MC4a LINE L1 -1909 5899 5527 804 269 89 52 chr1 98321521 98322335 -183871329 + L1MEd LINE L1 534 1429 -4881 2470 81 0 0 chr1 98322335 98322643 -183871021 - AluY SINE Alu -3 308 1 804 269 89 52 chr1 98322643 98322843 -183870821 + L1MEd LINE L1 1429 1620 -4690 1440 129 0 0 chr1 98323069 98323262 -183870402 + AluSp SINE Alu 107 299 -14 1675 178 0 18 chr1 98323328 98323614 -183870050 + AluJo SINE Alu 1 281 -31 1610 137 29 87 chr1 98324135 98324515 -183869149 + MLT2D LTR ERVL 1 358 -56 533 222 48 32 chr1 98328100 98328226 -183865438 + MIR SINE MIR 12 139 -123 197 62 0 31 chr1 98328230 98328262 -183865402 + (TAA)n Simple_repeat Simple_repeat 2 32 0 187 290 14 14 chr1 98328513 98328582 -183865082 + MIR SINE MIR 194 262 0 426 185 0 0 chr1 98329457 98329538 -183864126 - AluJo SINE Alu -2 310 230 3895 80 192 2 chr1 98329538 98330116 -183863548 + LTR12 LTR ERV1 1 688 0 1451 171 0 34 chr1 98330118 98330357 -183863307 - AluJo SINE Alu -81 231 1 346 296 9 9 chr1 98330898 98331006 -183862658 + MLT1I LTR MaLR 294 401 -8 310 289 11 11 chr1 98332614 98332704 -183860960 + HAL1 LINE L1 1381 1470 -1037 1372 108 26 0 chr1 98332709 98332904 -183860760 + AluSp SINE Alu 106 305 -8 903 222 154 8 chr1 98332918 98333269 -183860395 + HAL1 LINE L1 1478 1879 -628 328 309 0 59 chr1 98333409 98333545 -183860119 + HAL1b LINE L1 746 873 -475 621 183 70 0 chr1 98333911 98334026 -183859638 - FLAM_A SINE Alu -10 123 1 1479 169 31 69 chr1 98334038 98334072 -183859592 + MER46B DNA MER2_type 26 60 -2671 1448 203 7 36 chr1 98334072 98334378 -183859286 - AluJb SINE Alu -15 297 1 1479 169 31 69 chr1 98334378 98334692 -183858972 + MER46B DNA MER2_type 60 236 0 257 259 0 0 chr1 98334708 98334762 -183858902 + Tigger5 DNA MER2_type 2 55 -2268 276 213 0 16 chr1 98334783 98334844 -183858820 + Tigger5 DNA MER2_type 2264 2323 0 387 0 0 0 chr1 98338062 98338105 -183855559 + (CA)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr1 98338712 98338734 -183854930 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2236 85 7 7 chr1 98338736 98339029 -183854635 - AluSp SINE Alu -20 293 1 236 305 40 79 chr1 98340189 98340366 -183853298 - L2 LINE L2 -168 3104 2935 1101 276 35 8 chr1 98341172 98341574 -183852090 + LTR16A LTR ERVL 34 446 -4 2059 73 106 0 chr1 98341945 98342219 -183851445 + AluY SINE Alu 1 303 -8 473 291 109 14 chr1 98342995 98343215 -183850449 + MIR SINE MIR 21 261 -1 519 330 33 62 chr1 98344541 98344817 -183848847 - L2 LINE L2 -3 3269 3002 976 302 87 18 chr1 98344947 98345348 -183848316 + L3 LINE CR1 398 826 -751 290 271 112 0 chr1 98345566 98345673 -183847991 - MLT1J LTR MaLR -34 477 359 672 254 83 65 chr1 98345727 98346078 -183847586 - MLT1J LTR MaLR -154 357 1 475 327 180 1 chr1 98346081 98346386 -183847278 + L2 LINE L2 2659 3014 -299 1127 124 9 76 chr1 98346863 98346899 -183846765 - MER20 DNA MER1_type -7 212 175 2330 94 0 7 chr1 98346899 98347196 -183846468 + AluSx SINE Alu 1 295 -17 1127 124 9 76 chr1 98347196 98347384 -183846280 - MER20 DNA MER1_type -44 175 3 359 289 35 52 chr1 98347471 98347644 -183846020 + MIR SINE MIR 56 225 -37 348 231 0 13 chr1 98347924 98348002 -183845662 + L2 LINE L2 2527 2603 -711 495 188 247 6 chr1 98348957 98349127 -183844537 - MER58C DNA MER1_type -1 214 4 23 0 0 0 chr1 98349256 98349279 -183844385 + AT_rich Low_complexity Low_complexity 1 23 0 367 269 9 46 chr1 98349607 98349715 -183843949 - L2 LINE L2 -23 3290 3187 266 264 66 0 chr1 98349768 98349859 -183843805 - MIR SINE MIR -35 227 131 185 207 0 52 chr1 98352043 98352101 -183841563 + MIR SINE MIR 88 142 -120 226 160 0 40 chr1 98352406 98352456 -183841208 + L2 LINE L2 3266 3313 0 459 159 0 0 chr1 98354272 98354341 -183839323 + Tigger2 DNA MER2_type 1 69 -2649 * 2543 114 13 76 chr1 98354325 98354519 -183839145 + Tigger2 DNA MER2_type 2267 2472 -246 2369 130 55 6 chr1 98354519 98354866 -183838798 + THE1B LTR MaLR 1 364 0 2543 114 13 76 chr1 98354866 98355080 -183838584 + Tigger2 DNA MER2_type 2472 2644 -74 2301 111 0 0 chr1 98355080 98355377 -183838287 + AluSx SINE Alu 1 297 -15 2543 114 13 76 chr1 98355377 98355439 -183838225 + Tigger2 DNA MER2_type 2644 2708 -10 200 234 0 21 chr1 98355485 98355532 -183838132 - L3b LINE CR1 -10 1573 1528 199 371 0 0 chr1 98355553 98355623 -183838041 + MER5A DNA MER1_type 65 134 -55 767 156 0 0 chr1 98355701 98355810 -183837854 - FLAM_C SINE Alu -25 118 10 273 264 115 115 chr1 98355811 98355985 -183837679 - MER5A DNA MER1_type -6 183 10 274 346 29 15 chr1 98356032 98356168 -183837496 - L3 LINE CR1 -147 1430 1293 297 318 11 0 chr1 98356411 98356499 -183837165 - L2 LINE L2 0 3313 3225 * 412 302 106 21 chr1 98356489 98356678 -183836986 - L3 LINE CR1 -489 1088 884 195 245 75 0 chr1 98356760 98356813 -183836851 - MIR SINE MIR -76 186 130 876 184 61 10 chr1 98356814 98357010 -183836654 - MLT1A1 LTR MaLR 0 365 160 1900 141 0 26 chr1 98357141 98357446 -183836218 - AluJo SINE Alu -15 297 1 670 228 15 56 chr1 98357470 98357667 -183835997 + MIR SINE MIR 29 217 -45 496 297 139 94 chr1 98357707 98358106 -183835558 - L3 LINE CR1 -388 1189 810 231 214 107 0 chr1 98358106 98358162 -183835502 + L1ME LINE L1 5586 5647 -519 496 297 139 94 chr1 98358162 98358546 -183835118 - L3 LINE CR1 -767 810 313 380 297 63 0 chr1 98359290 98359401 -183834263 + L2 LINE L2 3155 3272 0 336 268 53 71 chr1 98361370 98361567 -183832097 - MIR3 SINE MIR -66 142 3 335 306 168 5 chr1 98362032 98362241 -183831423 - L3 LINE CR1 -98 1479 1237 527 171 11 0 chr1 98362267 98362355 -183831309 + MLT1B LTR MaLR 1 89 -301 2216 140 151 8 chr1 98362357 98362728 -183830936 - MSTA LTR MaLR 0 428 5 6570 193 51 14 chr1 98362732 98364203 -183829461 - MSTA-int LTR MaLR 0 1580 1 2314 132 137 8 chr1 98364203 98364582 -183829082 - MSTA LTR MaLR 0 428 1 1562 146 27 37 chr1 98364582 98364877 -183828787 + MLT1B LTR MaLR 88 379 -11 300 218 55 0 chr1 98365714 98365769 -183827895 - AluJo SINE Alu -34 268 211 976 188 6 12 chr1 98365770 98365940 -183827724 - AluJo SINE Alu -143 169 1 972 152 55 0 chr1 98365943 98366108 -183827556 - AluSg/x SINE Alu -5 307 134 1984 154 0 0 chr1 98366108 98366414 -183827250 - AluSg SINE Alu -4 306 1 29 0 0 0 chr1 98369979 98370008 -183823656 + AT_rich Low_complexity Low_complexity 1 29 0 285 319 121 25 chr1 98370586 98370743 -183822921 + MIR SINE MIR 36 207 -55 21 0 0 0 chr1 98371761 98371782 -183821882 + AT_rich Low_complexity Low_complexity 1 21 0 808 166 13 236 chr1 98371783 98372005 -183821659 - L1MD3 LINE L1 -1 7994 7816 667 122 0 0 chr1 98372005 98372095 -183821569 - 5S rRNA rRNA -31 90 1 808 166 13 236 chr1 98372095 98372241 -183821423 - L1MD3 LINE L1 -179 7816 7639 2409 202 118 27 chr1 98372241 98372903 -183820761 - MER50 LTR ERV1 0 734 13 1402 217 13 19 chr1 98372903 98373132 -183820532 - L1MC4a LINE L1 -329 7479 7251 4558 117 33 33 chr1 98373132 98373859 -183819805 + LTR8A LTR ERV1 1 727 0 1402 217 13 19 chr1 98373859 98373938 -183819726 - L1MC4a LINE L1 -557 7251 7173 * 2069 257 82 44 chr1 98373935 98375774 -183817890 - L1MC4a LINE L1 -797 5349 4018 1889 123 6 27 chr1 98375781 98376130 -183817534 - MER4A LTR ERV1 -4 660 261 519 108 49 39 chr1 98376127 98376229 -183817435 - MER4A LTR ERV1 -561 103 1 * 366 193 22 89 chr1 98376236 98376371 -183817293 - L1MC4a LINE L1 -2146 4000 3875 1286 234 129 57 chr1 98376383 98376493 -183817171 + MLT1D LTR MaLR 1 102 -403 2781 19 0 0 chr1 98376493 98376800 -183816864 - AluYa5 SINE Alu -4 307 1 1286 234 129 57 chr1 98376800 98377043 -183816621 + MLT1D LTR MaLR 102 399 -106 1565 192 4 7 chr1 98377043 98377324 -183816340 - AluJb SINE Alu -32 280 1 1286 234 129 57 chr1 98377324 98377440 -183816224 + MLT1D LTR MaLR 399 505 0 2944 237 47 75 chr1 98377440 98378787 -183814877 + MLT1D-int LTR MaLR 1 1338 -33 1399 223 104 50 chr1 98378814 98379089 -183814575 + MLT1D LTR MaLR 1 314 -191 1848 209 86 30 chr1 98379089 98379520 -183814144 - MSTB2 LTR MaLR 0 457 3 1399 223 104 50 chr1 98379520 98379723 -183813941 + MLT1D LTR MaLR 314 505 0 794 296 63 28 chr1 98379782 98380401 -183813263 - L1MC4a LINE L1 -2316 3830 3190 462 315 107 41 chr1 98380460 98381215 -183812449 - HAL1b LINE L1 -543 805 1 4229 194 29 12 chr1 98381751 98382645 -183811019 + L1MA9 LINE L1 5366 6274 -38 468 269 118 71 chr1 98383243 98383566 -183810098 + L2 LINE L2 2182 2519 -795 2363 159 17 48 chr1 98384060 98384539 -183809125 - Charlie4a DNA MER1_type -44 464 1 418 196 0 98 chr1 98385978 98386045 -183807619 + MER5A DNA MER1_type 8 63 -126 2247 113 0 0 chr1 98386045 98386347 -183807317 + AluY SINE Alu 1 302 -9 418 196 0 98 chr1 98386347 98386381 -183807283 + MER5A DNA MER1_type 63 99 -90 293 174 43 43 chr1 98387183 98387252 -183806412 + MER8 DNA MER2_type 111 179 -60 576 170 0 20 chr1 98387276 98387376 -183806288 - MER2 DNA MER2_type -247 98 1 2021 117 3 42 chr1 98387498 98387806 -183805858 - AluSx SINE Alu -16 296 1 341 332 116 21 chr1 98387878 98388068 -183805596 - MIR SINE MIR -36 226 19 296 271 47 9 chr1 98389652 98389759 -183803905 + MLT1J1 LTR MaLR 21 131 -315 * 496 244 80 76 chr1 98389750 98389920 -183803744 + MLT1J2 LTR MaLR 157 330 -120 1588 177 23 101 chr1 98389920 98390220 -183803444 - MLT1A1 LTR MaLR 0 365 102 2072 148 0 7 chr1 98390220 98390524 -183803140 - AluSx SINE Alu -10 302 1 1588 177 23 101 chr1 98390524 98390619 -183803045 - MLT1A1 LTR MaLR -263 102 1 496 244 80 76 chr1 98390619 98390710 -183802954 + MLT1J2 LTR MaLR 330 419 -31 609 281 105 18 chr1 98390861 98391089 -183802575 - MIR SINE MIR -14 248 1 366 121 17 0 chr1 98391779 98391837 -183801827 - MADE1 DNA Mariner 0 80 22 543 287 47 21 chr1 98391850 98392050 -183801614 + MIR SINE MIR 2 199 -63 340 310 123 6 chr1 98394059 98394230 -183799434 - MIR SINE MIR -6 256 66 328 321 131 0 chr1 98394252 98394389 -183799275 + L2 LINE L2 3118 3272 0 1010 257 103 32 chr1 98394987 98395357 -183798307 + MSTD LTR MaLR 1 396 0 6611 231 77 34 chr1 98395361 98396878 -183796786 + MSTD-int LTR MaLR 4 1601 -134 2317 90 0 3 chr1 98396878 98397179 -183796485 - AluY SINE Alu -11 300 1 6611 231 77 34 chr1 98397179 98397321 -183796343 + MSTD-int LTR MaLR 1601 1735 0 671 192 74 35 chr1 98397321 98397596 -183796068 + MLT1A2 LTR MaLR 1 331 -97 32 26 0 0 chr1 98398051 98398090 -183795574 + AT_rich Low_complexity Low_complexity 1 39 0 2345 88 7 3 chr1 98399032 98399339 -183794325 - AluSg SINE Alu -2 308 1 321 247 110 19 chr1 98399959 98400113 -183793551 - L1ME4a LINE L1 -1 6120 5953 1273 141 0 0 chr1 98400194 98400379 -183793285 + AluSx SINE Alu 5 189 -123 263 146 0 55 chr1 98400384 98400439 -183793225 - L1ME4a LINE L1 -280 5841 5790 426 213 189 16 chr1 98401036 98401158 -183792506 - MIR SINE MIR -4 258 116 23 0 0 0 chr1 98401435 98401458 -183792206 + AT_rich Low_complexity Low_complexity 1 23 0 362 267 91 89 chr1 98401781 98402580 -183791084 - L1M4 LINE L1 -1315 4831 4031 23 54 0 0 chr1 98402603 98402640 -183791024 + AT_rich Low_complexity Low_complexity 1 37 0 1764 190 22 96 chr1 98402757 98403027 -183790637 + LTR40a LTR ERVL 1 211 -308 2078 42 0 0 chr1 98403027 98403263 -183790401 + AluY SINE Alu 68 303 -8 1764 190 22 96 chr1 98403263 98403545 -183790119 + LTR40a LTR ERVL 211 512 -7 1853 159 10 26 chr1 98403546 98403848 -183789816 - AluJo SINE Alu -15 297 1 486 334 78 38 chr1 98403871 98404076 -183789588 - L1M4 LINE L1 -2385 3761 3535 1995 135 0 53 chr1 98404076 98404394 -183789270 + AluSx SINE Alu 1 301 -11 486 334 78 38 chr1 98404394 98404532 -183789132 - L1M4 LINE L1 -2611 3535 3404 483 338 125 35 chr1 98404562 98405184 -183788480 - L1M4 LINE L1 -2792 3354 2677 27 0 0 0 chr1 98405492 98405519 -183788145 + AT_rich Low_complexity Low_complexity 1 27 0 49 71 0 0 chr1 98405622 98405720 -183787944 + AT_rich Low_complexity Low_complexity 1 98 0 1164 89 0 6 chr1 98405722 98405891 -183787773 - L1MA1 LINE L1 -4 6298 6131 691 34 0 0 chr1 98405891 98405975 -183787689 - L1PA4 LINE L1 -3 6152 6064 6098 105 9 6 chr1 98405975 98407013 -183786651 - L1MA1 LINE L1 -147 6155 5107 23 78 0 0 chr1 98407192 98407243 -183786421 + AT_rich Low_complexity Low_complexity 1 51 0 460 277 53 58 chr1 98407334 98407522 -183786142 - MIR3 SINE MIR -6 202 16 288 297 71 77 chr1 98409632 98409814 -183783850 - MIR3 SINE MIR -4 204 24 403 280 225 0 chr1 98410096 98410278 -183783386 + MIR SINE MIR 25 247 -15 351 268 169 33 chr1 98410272 98410485 -183783179 - MIR SINE MIR -2 260 19 * 462 298 50 39 chr1 98410541 98410722 -183782942 + MIR SINE MIR 2 184 -78 2058 243 86 6 chr1 98412275 98412789 -183780875 - MLT1H1 LTR MaLR 0 555 1 277 234 21 53 chr1 98413224 98413318 -183780346 - MLT1H1-int LTR MaLR -995 376 286 2097 231 33 4 chr1 98413453 98413964 -183779700 - MLT1H1 LTR MaLR 0 555 30 193 339 73 37 chr1 98414061 98414170 -183779494 + MIR SINE MIR 34 146 -62 392 272 114 38 chr1 98414845 98415029 -183778635 + MIR3 SINE MIR 2 199 -9 4401 257 122 25 chr1 98415102 98416996 -183776668 - L2 LINE L2 0 3313 1234 26 0 0 0 chr1 98417621 98417647 -183776017 + AT_rich Low_complexity Low_complexity 1 26 0 412 187 0 0 chr1 98418903 98418978 -183774686 + MER116 DNA Mariner 1 75 -5 592 328 27 46 chr1 98419284 98419653 -183774011 + L2 LINE L2 1684 2045 -1269 273 280 56 16 chr1 98419661 98419786 -183773878 + L2 LINE L2 3182 3311 -2 922 224 5 5 chr1 98421404 98421634 -183772030 - L1MA9 LINE L1 -1 6299 6068 274 337 57 51 chr1 98421762 98421937 -183771727 + MIR SINE MIR 66 241 -21 230 349 0 0 chr1 98421937 98422020 -183771644 + MIR SINE MIR 174 256 -6 581 245 67 29 chr1 98422164 98422372 -183771292 + LTR16C LTR ERVL 273 488 -3 562 275 97 75 chr1 98422490 98422810 -183770854 - L2 LINE L2 0 3313 2987 228 240 300 32 chr1 98423174 98423330 -183770334 - MIR SINE MIR -66 196 8 210 236 0 36 chr1 98424123 98424178 -183769486 - MIR SINE MIR -74 188 136 509 336 21 17 chr1 98424269 98424510 -183769154 + MIR SINE MIR 13 254 -8 1641 125 42 125 chr1 98424527 98424936 -183768728 - THE1C LTR MaLR 0 375 1 334 260 60 0 chr1 98424956 98425056 -183768608 - MER94 DNA DNA -3 131 26 1754 218 16 0 chr1 98425058 98425443 -183768221 + L1MD2 LINE L1 5944 6334 -25 182 371 69 0 chr1 98425516 98425632 -183768032 + L2 LINE L2 3050 3173 -140 * 356 250 171 51 chr1 98425625 98425801 -183767863 - L2 LINE L2 -1 3312 3116 1363 232 101 63 chr1 98425814 98426303 -183767361 - MLT2B1 LTR ERVL -8 442 4 225 300 33 22 chr1 98426334 98426424 -183767240 - L2 LINE L2 -235 3078 2988 * 537 206 145 8 chr1 98426423 98426554 -183767110 + L2 LINE L2 3162 3310 -3 269 302 73 10 chr1 98426564 98426660 -183767004 + L2 LINE L2 3168 3269 -3 301 250 17 112 chr1 98426691 98426807 -183766857 + L2 LINE L2 3199 3303 -10 288 336 10 10 chr1 98426817 98426921 -183766743 - MIR SINE MIR -71 137 34 290 301 52 137 chr1 98430488 98430570 -183763094 - L2 LINE L2 -2 3270 3183 2260 98 7 10 chr1 98430570 98430875 -183762789 + AluSq SINE Alu 1 304 -9 290 301 52 137 chr1 98430875 98431237 -183762427 - L2 LINE L2 -89 3183 2864 499 328 113 26 chr1 98431297 98431687 -183761977 - MLT1K LTR MaLR -65 523 100 2230 86 38 3 chr1 98431901 98432193 -183761471 - AluSx SINE Alu -7 305 4 499 319 0 0 chr1 98432410 98432554 -183761110 - MIR SINE MIR -50 212 69 1042 190 85 61 chr1 98432639 98432741 -183760923 + MER2 DNA MER2_type 1 99 -246 2372 68 0 0 chr1 98432741 98433037 -183760627 + AluY SINE Alu 1 296 -15 1042 190 85 61 chr1 98433037 98433263 -183760401 + MER2 DNA MER2_type 99 345 0 1957 154 42 0 chr1 98433364 98433720 -183759944 - L1MB4 LINE L1 -10 6170 5800 226 233 111 33 chr1 98433982 98434072 -183759592 + L2 LINE L2 3209 3305 -8 270 314 124 16 chr1 98434082 98434203 -183759461 - L2 LINE L2 -4 3309 3176 658 275 134 35 chr1 98436870 98437266 -183756398 - LTR16A LTR ERVL 0 450 16 317 376 46 5 chr1 98438472 98438666 -183754998 - L3b LINE CR1 -20 1563 1362 302 309 57 72 chr1 98438665 98438859 -183754805 + MIR SINE MIR 20 210 -52 * 610 213 0 16 chr1 98440204 98440326 -183753338 - L2 LINE L2 0 3313 3194 253 356 57 8 chr1 98441398 98441523 -183752141 - MIR SINE MIR -62 146 39 222 239 0 0 chr1 98441886 98441957 -183751707 + (TG)n Simple_repeat Simple_repeat 2 72 0 2347 225 93 3 chr1 98442132 98442723 -183750941 + MLT1E1 LTR MaLR 3 646 -8 258 32 0 0 chr1 98442916 98442947 -183750717 + (TG)n Simple_repeat Simple_repeat 1 31 0 1321 207 15 22 chr1 98442966 98443290 -183750374 - L1MB7 LINE L1 -16 6168 5847 335 127 16 0 chr1 98443296 98443359 -183750305 + L1MB7 LINE L1 5767 5830 -344 828 234 37 7 chr1 98443360 98443629 -183750035 - L1M4 LINE L1 -3654 2492 2216 248 242 242 7 chr1 98443940 98444089 -183749575 + MLT1J2 LTR MaLR 267 450 0 22 0 0 0 chr1 98448782 98448804 -183744860 + AT_rich Low_complexity Low_complexity 1 22 0 397 241 0 12 chr1 98450430 98450513 -183743151 + MIR SINE MIR 34 115 -147 4434 111 44 0 chr1 98450526 98451185 -183742479 - LTR12 LTR ERV1 0 688 1 542 254 35 56 chr1 98451264 98451552 -183742112 - pTR5 LTR ERV1 -1410 1028 747 380 173 49 12 chr1 98451552 98451633 -183742031 + MIR SINE MIR 158 241 -21 3501 115 23 6 chr1 98453048 98453561 -183740103 + MER1A DNA MER1_type 5 526 -1 236 266 104 99 chr1 98453658 98453880 -183739784 + L2 LINE L2 3086 3308 -5 23 54 0 0 chr1 98453962 98453999 -183739665 + AT_rich Low_complexity Low_complexity 1 37 0 1352 192 36 0 chr1 98453999 98454301 -183739363 - L1MA4 LINE L1 -1 6299 5987 240 299 42 42 chr1 98454612 98454779 -183738885 - HAL1b LINE L1 -416 932 766 23 33 0 0 chr1 98455194 98455224 -183738440 + AT_rich Low_complexity Low_complexity 1 30 0 609 284 93 73 chr1 98455274 98455613 -183738051 - HAL1 LINE L1 -698 1809 1451 2380 76 0 10 chr1 98455613 98455914 -183737750 - AluY SINE Alu -13 298 1 609 284 93 73 chr1 98455914 98456175 -183737489 - HAL1 LINE L1 -1056 1451 1197 263 336 42 23 chr1 98456239 98456456 -183737208 - HAL1 LINE L1 -1476 1031 811 2393 96 0 10 chr1 98456588 98456901 -183736763 - AluY SINE Alu -1 310 1 22 56 0 0 chr1 98457874 98457910 -183735754 + AT_rich Low_complexity Low_complexity 1 36 0 23463 147 21 10 chr1 98457939 98465267 -183728397 - L1MA3 LINE L1 -296 7428 16 847 190 0 0 chr1 98465273 98465410 -183728254 - AluJo SINE Alu -175 137 1 2327 109 0 3 chr1 98465425 98465738 -183727926 - AluSq SINE Alu -1 312 1 225 182 0 0 chr1 98465750 98465805 -183727859 + T-rich Low_complexity Low_complexity 1 55 0 6009 36 0 0 chr1 98465818 98466532 -183727132 - L1PA4 LINE L1 0 6155 5442 196 191 0 24 chr1 98466538 98466580 -183727084 - L3 LINE CR1 -3 1574 1534 215 269 204 0 chr1 98468967 98469075 -183724589 + MIR SINE MIR 22 151 -111 2429 146 22 28 chr1 98469162 98469622 -183724042 - MSTB2 LTR MaLR 0 457 1 331 253 12 0 chr1 98471797 98471880 -183721784 - L2 LINE L2 -2 3311 3228 335 376 76 19 chr1 98471883 98472093 -183721571 + L2 LINE L2 3018 3239 -33 2950 125 0 5 chr1 98472155 98472594 -183721070 - L1PA15 LINE L1 0 6165 5729 982 274 132 39 chr1 98472594 98473080 -183720584 + MLT1H LTR MaLR 18 548 -1 219 338 59 22 chr1 98473236 98473372 -183720292 - MIR3 SINE MIR -1 207 67 345 329 168 20 chr1 98475169 98475318 -183718346 - L2 LINE L2 0 3272 3102 207 0 0 0 chr1 98475877 98475900 -183717764 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2256 89 0 0 chr1 98476949 98477251 -183716413 + AluY SINE Alu 1 302 -9 879 275 47 4 chr1 98478920 98479156 -183714508 - MIR SINE MIR 0 262 17 262 214 82 51 chr1 98483454 98483552 -183710112 - Charlie7 DNA MER1_type 0 2612 2512 373 306 122 6 chr1 98483553 98483733 -183709931 - Charlie7 DNA MER1_type -1922 690 490 287 279 208 0 chr1 98483998 98484152 -183709512 - Charlie7 DNA MER1_type -2426 186 1 279 346 58 67 chr1 98484355 98484778 -183708886 - L2 LINE L2 -61 3211 2712 221 316 0 0 chr1 98484795 98484852 -183708812 + MIR SINE MIR 206 262 0 432 167 14 0 chr1 98485075 98485147 -183708517 - Tigger5 DNA MER2_type -3 2320 2248 280 103 0 221 chr1 98485151 98485219 -183708445 + Tigger5 DNA MER2_type 2265 2317 -6 440 208 0 0 chr1 98485223 98485300 -183708364 - Tigger5 DNA MER2_type -2246 77 1 303 28 0 0 chr1 98485632 98485668 -183707996 + (TG)n Simple_repeat Simple_repeat 2 37 0 246 331 14 21 chr1 98487435 98487580 -183706084 + CT-rich Low_complexity Low_complexity 4 147 0 22 0 0 0 chr1 98487882 98487904 -183705760 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr1 98488375 98488404 -183705260 + (TG)n Simple_repeat Simple_repeat 2 30 0 1300 182 64 78 chr1 98488429 98488598 -183705066 - AluJo SINE Alu -20 292 127 2423 53 40 0 chr1 98488598 98488897 -183704767 - AluY SINE Alu 0 311 1 1300 182 64 78 chr1 98488897 98489023 -183704641 - AluJo SINE Alu -185 127 1 607 256 37 76 chr1 98489267 98489563 -183704101 - MLT1I LTR MaLR -124 285 39 1936 103 51 87 chr1 98489735 98489806 -183703858 - THE1C LTR MaLR 0 375 303 2423 80 3 3 chr1 98489806 98490118 -183703546 + AluSp SINE Alu 1 312 -1 1936 103 51 87 chr1 98490118 98490435 -183703229 - THE1C LTR MaLR -72 303 1 180 0 0 0 chr1 98490568 98490588 -183703076 + (T)n Simple_repeat Simple_repeat 1 20 0 270 191 0 0 chr1 98490917 98490964 -183702700 + L2 LINE L2 3267 3313 0 232 203 17 34 chr1 98491471 98491530 -183702134 + L2 LINE L2 3253 3310 -3 434 271 112 48 chr1 98493095 98493340 -183700324 - MIR SINE MIR 0 262 5 254 213 0 13 chr1 98493767 98493842 -183699822 + GA-rich Low_complexity Low_complexity 3 76 0 2309 52 6 52 chr1 98493905 98494231 -183699433 - AluY SINE Alu 0 311 1 446 295 11 49 chr1 98494298 98494481 -183699183 - MIR SINE MIR -56 206 31 891 358 126 22 chr1 98494552 98495276 -183698388 + L2 LINE L2 1846 2644 -670 334 250 148 17 chr1 98495517 98495693 -183697971 + L2 LINE L2 3086 3284 -29 1024 259 73 53 chr1 98495704 98496195 -183697469 - LTR33 LTR ERVL 0 521 21 322 287 50 0 chr1 98496903 98497004 -183696660 + L2 LINE L2 3208 3313 0 2220 100 0 3 chr1 98497158 98497447 -183696217 - AluSc SINE Alu -21 288 1 3661 219 52 27 chr1 98498000 98498957 -183694707 - L1ME2 LINE L1 -10 6154 5162 2146 117 0 0 chr1 98498957 98499271 -183694393 - AluSc SINE Alu 0 309 1 3661 219 52 27 chr1 98499271 98499913 -183693751 - L1ME2 LINE L1 -1002 5162 4538 881 154 100 75 chr1 98499941 98500220 -183693444 + AluJo SINE Alu 1 286 -16 347 286 76 14 chr1 98500241 98500451 -183693213 - L1ME2 LINE L1 -1597 4549 4327 1006 287 74 28 chr1 98502757 98503151 -183690513 - MLT1J2 LTR MaLR 0 450 39 558 276 68 31 chr1 98503351 98503543 -183690121 + MIR3 SINE MIR 2 200 -8 347 261 156 17 chr1 98504610 98504790 -183688874 - MIR SINE MIR -46 216 12 1059 188 16 0 chr1 98506197 98506383 -183687281 + MER5A DNA MER1_type 1 189 0 246 253 48 103 chr1 98507431 98507577 -183686087 + L2 LINE L2 3161 3298 -15 195 42 0 0 chr1 98507578 98507602 -183686062 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 366 269 51 74 chr1 98509578 98509753 -183683911 + MIR SINE MIR 20 190 -72 354 276 15 108 chr1 98510384 98510439 -183683225 + MIR3 SINE MIR 14 73 -135 2149 75 44 17 chr1 98510439 98510733 -183682931 - AluY SINE Alu -9 302 1 354 276 15 108 chr1 98510733 98510834 -183682830 + MIR3 SINE MIR 73 149 -59 785 269 5 0 chr1 98510834 98511042 -183682622 - MER3 DNA MER1_type 0 209 1 354 276 15 108 chr1 98511042 98511087 -183682577 + MIR3 SINE MIR 149 197 -11 793 205 60 0 chr1 98512668 98512834 -183680830 - MER45A DNA AcHobo -1 177 2 225 250 0 0 chr1 98512852 98512912 -183680752 + CT-rich Low_complexity Low_complexity 3 62 0 548 188 36 12 chr1 98512943 98513108 -183680556 + CT-rich Low_complexity Low_complexity 2 170 0 2402 46 0 3 chr1 98513234 98513555 -183680109 + AluY SINE Alu 1 320 0 245 331 8 62 chr1 98513582 98513712 -183679952 - MIR SINE MIR -63 145 23 325 226 161 7 chr1 98514174 98514311 -183679353 + MER103 DNA DNA 8 165 -1 857 210 84 105 chr1 98514422 98514899 -183678765 + MLT1C LTR MaLR 1 467 0 1605 161 35 87 chr1 98518822 98519189 -183674475 + MER7A DNA MER2_type 1 346 0 2447 74 0 13 chr1 98520175 98520487 -183673177 + AluSg SINE Alu 1 308 -2 6508 134 19 28 chr1 98521381 98522057 -183671607 - L1MA8 LINE L1 -43 6248 5568 1076 142 40 0 chr1 98522057 98522283 -183671381 - L1MA7 LINE L1 -10 6281 6047 6508 134 19 28 chr1 98522283 98523760 -183669904 - L1MA8 LINE L1 -723 5568 4114 2222 126 0 0 chr1 98524084 98524378 -183669286 + AluSg SINE Alu 1 294 -16 714 274 100 24 chr1 98524391 98524850 -183668814 + L1ME4a LINE L1 5493 5986 -135 332 314 70 67 chr1 98525426 98525856 -183667808 - MLT1K LTR MaLR -18 570 140 2437 85 0 3 chr1 98526374 98526680 -183666984 - AluY SINE Alu -6 305 1 1235 166 55 107 chr1 98526764 98527149 -183666515 - MLT1A1 LTR MaLR 0 365 1 985 260 39 21 chr1 98527308 98527643 -183666021 - MARNA DNA Mariner -167 419 79 225 65 0 0 chr1 98527667 98527698 -183665966 + (TG)n Simple_repeat Simple_repeat 2 32 0 2207 80 0 45 chr1 98528136 98528449 -183665215 + AluSc SINE Alu 1 299 -10 346 242 67 87 chr1 98528803 98528952 -183664712 + MIR SINE MIR 7 152 -110 241 260 137 14 chr1 98529913 98529986 -183663678 + L2 LINE L2 3191 3272 0 218 261 102 0 chr1 98531482 98531570 -183662094 + MIR SINE MIR 30 126 -82 485 119 0 12 chr1 98531704 98531788 -183661876 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 1759 161 3 13 chr1 98532243 98532541 -183661123 - AluJb SINE Alu -13 299 5 1749 176 0 23 chr1 98532566 98532867 -183660797 - AluJo SINE Alu -18 294 1 434 260 169 26 chr1 98533265 98533419 -183660245 - MER5B DNA MER1_type 0 178 3 342 250 13 0 chr1 98533493 98533569 -183660095 - MER81 DNA DNA -36 78 2 2291 85 0 29 chr1 98533586 98533893 -183659771 - AluSc SINE Alu -11 298 1 1168 153 0 6 chr1 98534185 98534362 -183659302 - AluSx SINE Alu -16 296 121 2040 136 7 7 chr1 98534486 98534796 -183658868 + AluSq SINE Alu 1 310 -3 48 53 0 0 chr1 98535260 98535336 -183658328 + AT_rich Low_complexity Low_complexity 1 76 0 1582 199 43 32 chr1 98535953 98536635 -183657029 - L1M3 LINE L1 -523 5657 4967 21 21 0 64 chr1 98536932 98536979 -183656685 + AT_rich Low_complexity Low_complexity 1 44 0 768 110 28 0 chr1 98538600 98538709 -183654955 - AluSx SINE Alu -200 112 1 645 289 25 0 chr1 98539511 98539715 -183653949 + L2 LINE L2 878 1086 -2228 242 278 28 14 chr1 98539729 98539801 -183653863 + L2 LINE L2 2684 2756 -558 486 295 58 68 chr1 98539923 98540573 -183653091 + L1ME3 LINE L1 683 1326 -4879 280 325 62 4 chr1 98540593 98540836 -183652828 + L1ME3 LINE L1 1341 1597 -4618 2320 89 0 13 chr1 98540837 98541140 -183652524 + AluY SINE Alu 1 299 -12 376 316 62 56 chr1 98541302 98541660 -183652004 + L1ME3 LINE L1 1848 2207 -4189 508 215 47 0 chr1 98541710 98541882 -183651782 + L1ME3 LINE L1 2252 2431 -3784 2307 98 13 3 chr1 98542558 98542865 -183650799 - AluSx SINE Alu -2 310 1 2342 82 16 0 chr1 98542888 98543194 -183650470 - AluY SINE Alu 0 311 1 835 175 0 0 chr1 98543211 98543331 -183650333 - FLAM_C SINE Alu -23 120 1 301 285 95 7 chr1 98543784 98543921 -183649743 - MIR SINE MIR -51 211 63 413 347 81 17 chr1 98545950 98546359 -183647305 + MLT1K LTR MaLR 148 582 -6 600 219 46 39 chr1 98548575 98548835 -183644829 + L1ME3 LINE L1 5039 5300 -915 267 246 0 23 chr1 98548843 98548973 -183644691 + (TA)n Simple_repeat Simple_repeat 2 128 0 624 219 53 39 chr1 98548975 98549216 -183644448 + L1ME3 LINE L1 5289 5536 -695 3561 135 56 87 chr1 98549221 98549387 -183644277 + LTR1 LTR ERV1 12 181 -604 2197 84 37 0 chr1 98549387 98549683 -183643981 + AluSc SINE Alu 1 307 -2 3561 135 56 87 chr1 98549683 98550314 -183643350 + LTR1 LTR ERV1 181 785 0 1642 253 85 18 chr1 98550314 98550529 -183643135 + L1ME3 LINE L1 5525 5724 -507 180 0 0 0 chr1 98550529 98550549 -183643115 + (CA)n Simple_repeat Simple_repeat 1 20 0 1642 253 85 18 chr1 98550549 98550994 -183642670 + L1ME3 LINE L1 5724 6229 -2 1987 100 52 0 chr1 98551277 98551569 -183642095 + AluY SINE Alu 1 306 0 1247 120 6 0 chr1 98551576 98551751 -183641913 + AluSg/x SINE Alu 127 302 -10 2469 83 3 0 chr1 98552599 98552900 -183640764 + AluSp SINE Alu 1 302 -11 653 293 96 32 chr1 98553129 98553317 -183640347 + L1MEd LINE L1 2964 3138 -3077 5648 196 72 16 chr1 98553317 98553379 -183640285 - Charlie1a DNA MER1_type -1306 1455 1398 2099 136 0 3 chr1 98553379 98553674 -183639990 + AluSg SINE Alu 1 294 -16 5648 196 72 16 chr1 98553674 98554985 -183638679 - Charlie1a DNA MER1_type -1363 1398 5 1154 181 41 27 chr1 98554985 98555206 -183638458 + MER58A DNA MER1_type 1 224 0 653 293 96 32 chr1 98555206 98556013 -183637651 + L1MEd LINE L1 3137 4035 -2180 327 222 0 56 chr1 98556014 98556104 -183637560 + L1MEd LINE L1 4132 4216 -1999 198 71 0 0 chr1 98556317 98556345 -183637319 + (TC)n Simple_repeat Simple_repeat 2 29 0 875 277 106 55 chr1 98556387 98556671 -183636993 + L1MEd LINE L1 4468 4736 -1503 1946 133 3 50 chr1 98556671 98556988 -183636676 + AluSx SINE Alu 3 304 -8 875 277 106 55 chr1 98556988 98557476 -183636188 + L1MEd LINE L1 4736 5198 -1041 1737 199 59 11 chr1 98557476 98557833 -183635831 + MLT1A2 LTR MaLR 1 374 0 875 277 106 55 chr1 98557833 98557994 -183635670 + L1MEd LINE L1 5198 5349 -890 2052 110 79 0 chr1 98557994 98558284 -183635380 + AluSq SINE Alu 1 313 0 875 277 106 55 chr1 98558284 98558532 -183635132 + L1MEd LINE L1 5349 5719 -520 4313 129 55 75 chr1 98558812 98559613 -183634051 - LTR1 LTR ERV1 0 785 1 2477 63 3 31 chr1 98560046 98560365 -183633299 + AluY SINE Alu 1 310 -1 3796 93 134 167 chr1 98560512 98561984 -183631680 - pTR5 LTR ERV1 0 2606 1524 641 237 9 64 chr1 98561984 98562203 -183631461 + MER112 DNA MER1_type 52 258 -2 207 224 0 20 chr1 98562206 98562255 -183631409 - MIR SINE MIR -110 152 105 280 359 92 7 chr1 98562425 98562567 -183631097 - L3 LINE CR1 -1204 373 220 3083 158 0 16 chr1 98563184 98563378 -183630286 + MER66B LTR ERV1 1 197 -289 2505 111 28 19 chr1 98563378 98563739 -183629925 - THE1B LTR MaLR 0 364 1 3083 158 0 16 chr1 98563739 98564038 -183629626 + MER66B LTR ERV1 197 486 0 229 373 133 0 chr1 98564225 98564383 -183629281 - MIR3 SINE MIR -11 197 19 630 299 28 16 chr1 98565609 98565863 -183627801 - MIR SINE MIR -5 257 1 2158 113 0 13 chr1 98565905 98566206 -183627458 - AluSg SINE Alu -13 297 1 507 294 55 0 chr1 98567657 98567846 -183625818 + MIR SINE MIR 6 201 -61 441 160 107 46 chr1 98568113 98568244 -183625420 + L1ME4a LINE L1 5982 6120 -1 268 294 145 45 chr1 98568293 98568514 -183625150 - MIR SINE MIR 0 262 20 426 299 13 33 chr1 98568619 98568775 -183624889 + MIR3 SINE MIR 9 159 -49 231 167 0 0 chr1 98570359 98570401 -183623263 + CT-rich Low_complexity Low_complexity 2 43 0 256 351 63 23 chr1 98572243 98572417 -183621247 + MIR SINE MIR 23 203 -59 1938 148 30 7 chr1 98573206 98573511 -183620153 + AluSx SINE Alu 1 312 0 2537 77 0 0 chr1 98573514 98573825 -183619839 + AluY SINE Alu 1 311 0 216 272 175 29 chr1 98573881 98573977 -183619687 - L2 LINE L2 0 3313 3200 192 77 0 0 chr1 98573977 98574003 -183619661 + (CA)n Simple_repeat Simple_repeat 2 27 0 740 226 154 23 chr1 98574309 98574530 -183619134 + MIR SINE MIR 11 260 -2 1528 230 42 21 chr1 98574537 98574916 -183618748 + MLT1B LTR MaLR 1 387 -3 243 263 69 53 chr1 98575382 98575540 -183618124 + MIR SINE MIR 31 190 -72 258 338 26 33 chr1 98577281 98577432 -183616232 - MIR SINE MIR -93 169 20 411 21 0 0 chr1 98578575 98578623 -183615041 + (TG)n Simple_repeat Simple_repeat 2 49 0 971 306 59 6 chr1 98579295 98579615 -183614049 - MER46C DNA MER2_type 0 338 2 2618 125 50 22 chr1 98579668 98580084 -183613580 - MSTA LTR MaLR 0 428 1 812 268 102 36 chr1 98580202 98580564 -183613100 + MLT1D LTR MaLR 120 505 0 1070 178 68 14 chr1 98580564 98580935 -183612729 + MLT1D-int LTR MaLR 1 489 -16 376 286 41 20 chr1 98581040 98581187 -183612477 + MIR SINE MIR 107 256 -6 668 151 25 50 chr1 98581883 98582002 -183611662 - AluJo SINE Alu -77 235 120 197 291 52 97 chr1 98582400 98582534 -183611130 + MIR3 SINE MIR 15 142 -66 2615 112 25 6 chr1 98582554 98582919 -183610745 + THE1C LTR MaLR 4 375 0 767 243 131 0 chr1 98582987 98583193 -183610471 + MIR SINE MIR 9 241 -21 182 185 0 0 chr1 98583880 98583907 -183609757 + L2 LINE L2 3211 3237 -35 254 328 148 39 chr1 98583907 98584245 -183609419 + L2 LINE L2 1994 2368 -946 1984 130 47 35 chr1 98584246 98584584 -183609080 + THE1B LTR MaLR 1 342 -22 1653 195 111 5 chr1 98584930 98585487 -183608177 - L1MC4 LINE L1 -460 7582 6876 726 268 133 54 chr1 98585495 98586355 -183607309 - L1ME LINE L1 -4764 1497 546 289 211 0 0 chr1 98587084 98587141 -183606523 - MER116 DNA Mariner -2 78 22 2185 98 0 0 chr1 98587304 98587578 -183606086 + AluSc SINE Alu 4 277 -32 7613 48 6 5 chr1 98587584 98588733 -183604931 + L1PA5 LINE L1 5000 6149 -5 294 29 0 0 chr1 98588771 98588806 -183604858 + (CA)n Simple_repeat Simple_repeat 2 36 0 942 189 42 19 chr1 98589095 98589307 -183604357 - MER96B DNA MER1_type? -198 219 3 254 218 0 36 chr1 98589658 98589713 -183603951 + polypurine Low_complexity Low_complexity 3 55 0 1848 179 40 17 chr1 98589854 98590207 -183603457 - THE1C LTR MaLR 0 375 15 477 271 86 19 chr1 98590280 98590382 -183603282 - L1M3c LINE L1 -3526 2689 2595 1384 179 78 26 chr1 98590382 98590679 -183602985 - AluJo SINE Alu 0 312 2 477 271 86 19 chr1 98590679 98590937 -183602727 - L1M3c LINE L1 -3620 2595 2304 323 293 101 43 chr1 98591273 98591584 -183602080 - L1M3c LINE L1 -4542 1604 1255 25 31 0 0 chr1 98592697 98592729 -183600935 + AT_rich Low_complexity Low_complexity 1 32 0 292 292 149 19 chr1 98593683 98593844 -183599820 + MIR SINE MIR 49 230 -32 1292 160 134 36 chr1 98594065 98594340 -183599324 - AluJo SINE Alu -10 302 1 514 310 60 19 chr1 98594410 98594626 -183599038 + MIR SINE MIR 10 234 -28 329 290 65 19 chr1 98594910 98595017 -183598647 + L2 LINE L2 3192 3303 -10 2322 93 3 3 chr1 98595074 98595375 -183598289 - AluSc SINE Alu -8 301 1 23 86 0 0 chr1 98595400 98595458 -183598206 + AT_rich Low_complexity Low_complexity 1 58 0 789 197 120 72 chr1 98596131 98596339 -183597325 - MER20 DNA MER1_type 0 219 2 463 210 17 50 chr1 98596348 98596467 -183597197 + L2 LINE L2 3193 3307 -6 2036 139 3 0 chr1 98596539 98596841 -183596823 + AluJb SINE Alu 5 307 -5 291 85 0 0 chr1 98597083 98597130 -183596534 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 334 262 152 14 chr1 98598042 98598187 -183595477 + MIR SINE MIR 14 178 -84 2380 167 17 0 chr1 98598720 98599079 -183594585 + MLT1A1 LTR MaLR 1 365 0 214 228 215 0 chr1 98599611 98599690 -183593974 + L2 LINE L2 2564 2659 -655 273 301 89 16 chr1 98600021 98600144 -183593520 + L2 LINE L2 2722 2853 -461 328 337 11 0 chr1 98600342 98600437 -183593227 + L2 LINE L2 3145 3240 -32 850 245 26 96 chr1 98600526 98600668 -183592996 + MER93b LTR ERV1 61 148 -225 2365 70 0 3 chr1 98600668 98600982 -183592682 + AluY SINE Alu 1 313 0 850 245 26 96 chr1 98600982 98601178 -183592486 + MER93b LTR ERV1 148 356 -17 942 203 47 5 chr1 98601285 98601477 -183592187 + MER3 DNA MER1_type 9 208 -1 868 202 34 39 chr1 98601561 98601769 -183591895 - MER3 DNA MER1_type 0 209 3 198 103 0 0 chr1 98602793 98602822 -183590842 + (TTC)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr1 98605642 98605671 -183587993 + AT_rich Low_complexity Low_complexity 1 29 0 373 352 135 5 chr1 98606948 98607141 -183586523 - L2 LINE L2 0 3272 3055 23 33 0 0 chr1 98607274 98607304 -183586360 + AT_rich Low_complexity Low_complexity 1 30 0 737 258 89 0 chr1 98607345 98607570 -183586094 - MIR SINE MIR -2 260 16 262 349 60 0 chr1 98608513 98608679 -183584985 + L1ME LINE L1 5626 5801 -320 49 0 0 0 chr1 98610175 98610224 -183583440 + AT_rich Low_complexity Low_complexity 1 49 0 224 305 160 30 chr1 98610325 98610456 -183583208 - MIR3 SINE MIR -52 156 9 269 159 0 14 chr1 98610556 98610625 -183583039 + GA-rich Low_complexity Low_complexity 4 71 0 3691 265 69 23 chr1 98610851 98610915 -183582749 + L1MEc LINE L1 2025 2085 -4130 2113 96 3 31 chr1 98610915 98611232 -183582432 + AluY SINE Alu 1 309 0 3691 265 69 23 chr1 98611232 98612999 -183580665 + L1MEc LINE L1 2085 3919 -2296 479 73 15 0 chr1 98613001 98613069 -183580595 + MER41A LTR ERV1 398 466 -88 455 223 6 25 chr1 98613074 98613231 -183580433 + L1MEc LINE L1 3908 4061 -2154 1148 136 33 56 chr1 98614470 98614683 -183578981 + AluJb SINE Alu 86 293 -19 345 191 67 67 chr1 98614819 98614892 -183578772 + L2 LINE L2 3180 3255 -17 16297 138 27 15 chr1 98614892 98617508 -183576156 + Tigger2 DNA MER2_type 1 2651 -67 2292 59 7 7 chr1 98617508 98617798 -183575866 + AluSc SINE Alu 1 290 -19 16297 138 27 15 chr1 98617798 98617866 -183575798 + Tigger2 DNA MER2_type 2651 2717 -1 345 191 67 67 chr1 98617866 98617881 -183575783 + L2 LINE L2 3254 3268 -4 369 385 72 12 chr1 98619187 98619436 -183574228 + L2 LINE L2 2915 3178 -94 1537 152 11 102 chr1 98619441 98619545 -183574119 + L1MC1 LINE L1 5594 5706 -627 1497 221 24 0 chr1 98619545 98619659 -183574005 + AluJo SINE Alu 1 111 -201 198 0 0 0 chr1 98619659 98619681 -183573983 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 1497 221 24 0 chr1 98619681 98619864 -183573800 + AluJo SINE Alu 111 305 -7 1537 152 11 102 chr1 98619864 98619956 -183573708 + L1MC1 LINE L1 5706 5805 -528 2160 125 19 33 chr1 98619956 98620324 -183573340 - THE1B LTR MaLR -1 363 1 1537 152 11 102 chr1 98620324 98620488 -183573176 + L1MC1 LINE L1 5805 5922 -411 2942 123 20 11 chr1 98620489 98620936 -183572728 - Tigger2 DNA MER2_type 0 2718 2268 26 50 0 0 chr1 98620952 98620992 -183572672 + AT_rich Low_complexity Low_complexity 1 40 0 2029 134 7 3 chr1 98621006 98621311 -183572353 + AluSq SINE Alu 1 306 -7 330 75 45 0 chr1 98621332 98621399 -183572265 + (TA)n Simple_repeat Simple_repeat 1 70 0 207 0 0 0 chr1 98621398 98621421 -183572243 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 1806 156 29 34 chr1 98621422 98621801 -183571863 + L1MB2 LINE L1 5786 6162 -9 926 274 112 64 chr1 98621825 98621850 -183571814 + L1ME LINE L1 3760 3782 -2380 2222 118 0 0 chr1 98621850 98622155 -183571509 + AluY SINE Alu 1 305 -6 926 274 112 64 chr1 98622155 98622599 -183571065 + L1ME LINE L1 3782 4203 -1959 2122 113 0 0 chr1 98622599 98622917 -183570747 + AluY SINE Alu 1 318 0 926 274 112 64 chr1 98622917 98623102 -183570562 + L1ME LINE L1 4203 4378 -1784 659 199 8 0 chr1 98623102 98623233 -183570431 - FLAM_C SINE Alu 0 133 2 926 274 112 64 chr1 98623233 98623297 -183570367 + L1ME LINE L1 4378 4437 -1725 1471 175 56 4 chr1 98623297 98623599 -183570065 + AluJb SINE Alu 1 316 0 926 274 112 64 chr1 98623599 98624196 -183569468 + L1ME LINE L1 4437 5004 -1158 1979 149 24 0 chr1 98624196 98624492 -183569172 + AluJb SINE Alu 5 307 -5 926 274 112 64 chr1 98624492 98624882 -183568782 + L1ME LINE L1 5004 5572 -590 3127 128 46 36 chr1 98624882 98625404 -183568260 + MER1A DNA MER1_type 1 527 0 926 274 112 64 chr1 98625404 98625542 -183568122 + L1ME LINE L1 5572 5702 -460 363 304 45 0 chr1 98625543 98625655 -183568009 + L2 LINE L2 3180 3296 -17 351 179 15 0 chr1 98627480 98627547 -183566117 - MIR SINE MIR -96 166 99 549 240 5 66 chr1 98627813 98628009 -183565655 + L2 LINE L2 3085 3268 -45 258 319 118 17 chr1 98628065 98628184 -183565480 - MIR3 SINE MIR -68 140 10 26 0 0 0 chr1 98628522 98628548 -183565116 + AT_rich Low_complexity Low_complexity 1 26 0 526 229 25 8 chr1 98628917 98629035 -183564629 - MIR SINE MIR -109 153 34 489 303 115 17 chr1 98629690 98629924 -183563740 - MIR SINE MIR -1 261 5 279 349 98 66 chr1 98631191 98631766 -183561898 - L2 LINE L2 -240 3032 2453 257 323 43 37 chr1 98632007 98632168 -183561496 - L2 LINE L2 -879 2435 2274 314 80 20 0 chr1 98633205 98633255 -183560409 + (TC)n Simple_repeat Simple_repeat 2 52 0 318 50 0 0 chr1 98633261 98633301 -183560363 + (TG)n Simple_repeat Simple_repeat 2 41 0 417 266 151 26 chr1 98633312 98633504 -183560160 - MIR SINE MIR 0 262 47 467 199 163 54 chr1 98633568 98633734 -183559930 + MIR SINE MIR 66 249 -13 180 152 0 0 chr1 98635480 98635513 -183558151 + GA-rich Low_complexity Low_complexity 2 34 0 555 294 0 0 chr1 98636063 98636209 -183557455 - MIR SINE MIR -28 234 89 1969 136 0 3 chr1 98636225 98636535 -183557129 - AluSx SINE Alu 0 309 1 322 182 0 30 chr1 98637809 98637875 -183555789 - MIR SINE MIR -20 242 179 242 180 82 66 chr1 98638851 98638912 -183554752 - MIR SINE MIR -90 172 111 363 276 76 9 chr1 98639964 98640069 -183553595 - L2 LINE L2 -9 3304 3193 1105 287 64 10 chr1 98640264 98640668 -183552996 + LTR33 LTR ERVL 96 521 0 2372 77 3 3 chr1 98640820 98641131 -183552533 - AluY SINE Alu 0 311 1 2931 136 36 8 chr1 98641168 98641668 -183551996 - L1MB1 LINE L1 -1 6167 5654 2396 243 33 26 chr1 98641721 98642294 -183551370 + MLT2F LTR ERVL 24 600 -63 219 114 0 0 chr1 98642483 98642518 -183551146 + (CA)n Simple_repeat Simple_repeat 2 36 0 231 196 0 39 chr1 98642525 98642576 -183551088 + MLT2F LTR ERVL 613 661 -2 1755 196 95 67 chr1 98642832 98643326 -183550338 + MLT2B1 LTR ERVL 1 508 -7 2420 43 0 4 chr1 98643986 98644266 -183549398 + AluY SINE Alu 17 295 -16 2350 97 0 0 chr1 98644276 98644574 -183549090 + AluY SINE Alu 1 298 -13 630 303 56 77 chr1 98644725 98645259 -183548405 + HAL1 LINE L1 958 1480 -1027 234 292 67 22 chr1 98645451 98645540 -183548124 + L2 LINE L2 3160 3252 -20 224 335 145 26 chr1 98645846 98646073 -183547591 - L2 LINE L2 -182 3090 2837 243 152 0 0 chr1 98646490 98646536 -183547128 + (CATA)n Simple_repeat Simple_repeat 3 48 0 4358 161 14 34 chr1 98647666 98648123 -183545541 - L1MB2 LINE L1 -7 6164 5729 2051 141 3 13 chr1 98648123 98648428 -183545236 - AluSx SINE Alu -10 302 1 4358 161 14 34 chr1 98648428 98648796 -183544868 - L1MB2 LINE L1 -442 5729 5355 21 0 0 0 chr1 98648927 98648948 -183544716 + AT_rich Low_complexity Low_complexity 1 21 0 310 375 44 6 chr1 98650398 98650558 -183543106 - L2 LINE L2 -5 3267 3102 282 194 0 155 chr1 98650807 98650936 -183542728 - MIR SINE MIR -10 252 144 829 188 25 6 chr1 98650936 98651096 -183542568 - AluJb SINE Alu -13 299 137 344 217 130 26 chr1 98651100 98651215 -183542449 - MIR SINE MIR -115 147 21 328 271 72 11 chr1 98651468 98651631 -183542033 + MIR SINE MIR 12 182 -80 825 215 36 87 chr1 98652018 98652237 -183541427 + MER20 DNA MER1_type 1 208 -11 1872 140 45 31 chr1 98652260 98652616 -183541048 + THE1C LTR MaLR 1 361 -14 2341 32 0 4 chr1 98652616 98652895 -183540769 + L1PA3 LINE L1 5875 6152 -3 26 0 0 0 chr1 98652895 98652921 -183540743 + AT_rich Low_complexity Low_complexity 1 26 0 1012 266 51 75 chr1 98653242 98653772 -183539892 - LTR33A LTR ERVL -2 521 5 33 80 0 0 chr1 98653844 98653919 -183539745 + AT_rich Low_complexity Low_complexity 1 75 0 529 259 43 19 chr1 98655214 98655376 -183538288 - MIR3 SINE MIR -7 201 36 720 236 50 46 chr1 98655518 98655759 -183537905 + MIR SINE MIR 3 244 -18 727 262 39 5 chr1 98656987 98657193 -183536471 + MIR SINE MIR 16 228 -34 1390 228 136 28 chr1 98657362 98657396 -183536268 - L2 LINE L2 -179 3134 3105 2136 117 0 25 chr1 98657396 98657713 -183535951 + AluSg1 SINE Alu 1 309 0 1390 228 136 28 chr1 98657713 98658291 -183535373 - L2 LINE L2 -208 3105 2445 1528 202 53 18 chr1 98658302 98658639 -183535025 - MLT2B1 LTR ERVL -171 349 1 219 222 37 0 chr1 98661735 98661816 -183531848 + (TA)n Simple_repeat Simple_repeat 1 84 0 471 35 0 0 chr1 98662497 98662554 -183531110 + (TG)n Simple_repeat Simple_repeat 1 57 0 201 402 10 10 chr1 98663037 98663139 -183530525 + MIR SINE MIR 40 141 -67 287 284 29 106 chr1 98663201 98663409 -183530255 + MIR SINE MIR 15 206 -56 21 0 0 0 chr1 98663441 98663462 -183530202 + AT_rich Low_complexity Low_complexity 1 21 0 2341 196 105 63 chr1 98665556 98666349 -183527315 + LTR1B LTR ERV1 1 826 0 468 315 87 23 chr1 98667298 98667517 -183526147 + MIR SINE MIR 12 244 -18 199 89 0 44 chr1 98667809 98667854 -183525810 + (GAAAA)n Simple_repeat Simple_repeat 1 43 0 761 275 59 18 chr1 98668173 98668395 -183525269 - MIR SINE MIR -2 260 30 353 236 85 47 chr1 98668402 98668508 -183525156 + MER91C DNA MER1_type 1 110 -30 2583 58 3 0 chr1 98671161 98671470 -183522194 + AluY SINE Alu 1 310 -1 193 338 0 13 chr1 98671657 98671734 -183521930 - MIR3 SINE MIR -6 202 127 815 124 0 7 chr1 98672593 98672730 -183520934 + (TTCC)n Simple_repeat Simple_repeat 3 138 0 387 149 53 88 chr1 98673311 98673425 -183520239 - MIR SINE MIR -17 245 136 202 220 0 0 chr1 98673441 98673491 -183520173 + (TAA)n Simple_repeat Simple_repeat 3 52 0 780 304 36 16 chr1 98673491 98673741 -183519923 - MIR SINE MIR 0 262 8 527 305 105 31 chr1 98673817 98674207 -183519457 + L2 LINE L2 2895 3313 0 210 182 0 23 chr1 98675005 98675049 -183518615 + GA-rich Low_complexity Low_complexity 2 44 0 688 251 97 18 chr1 98675139 98675366 -183518298 - MIR SINE MIR -15 247 3 2456 70 3 6 chr1 98675573 98675885 -183517779 + AluY SINE Alu 1 311 0 2040 149 0 0 chr1 98675953 98676255 -183517409 - AluSx SINE Alu -10 302 1 1448 157 42 11 chr1 98676305 98676567 -183517097 + L1MC1 LINE L1 6064 6333 0 284 227 40 40 chr1 98678200 98678275 -183515389 + L2 LINE L2 3195 3269 -3 228 111 0 0 chr1 98681610 98681646 -183512018 + (CATA)n Simple_repeat Simple_repeat 4 39 0 28 29 0 0 chr1 98681738 98681773 -183511891 + AT_rich Low_complexity Low_complexity 1 35 0 2378 86 0 3 chr1 98682190 98682494 -183511170 + AluY SINE Alu 1 303 -8 1748 206 7 0 chr1 98682504 98682814 -183510850 + AluJb SINE Alu 1 312 0 371 322 14 10 chr1 98682816 98683024 -183510640 + L1ME4a LINE L1 5724 5932 -189 434 155 0 12 chr1 98683558 98683642 -183510022 + CT-rich Low_complexity Low_complexity 3 85 0 218 356 69 0 chr1 98683658 98683759 -183509905 - L2 LINE L2 -23 3290 3183 186 217 11 22 chr1 98684016 98684108 -183509556 + GA-rich Low_complexity Low_complexity 1 91 0 240 319 125 65 chr1 98684140 98684419 -183509245 - L2 LINE L2 -354 2960 2665 342 321 145 9 chr1 98684596 98684812 -183508852 + MIR SINE MIR 9 243 -19 21 0 0 0 chr1 98685792 98685813 -183507851 + AT_rich Low_complexity Low_complexity 1 21 0 379 308 0 8 chr1 98686482 98686599 -183507065 + L2 LINE L2 3198 3313 0 2410 61 0 7 chr1 98686867 98687164 -183506500 + AluY SINE Alu 1 295 -16 330 357 82 63 chr1 98687196 98687608 -183506056 + L1ME LINE L1 2 421 -5698 229 335 89 34 chr1 98687612 98687848 -183505816 + L1ME LINE L1 438 686 -5433 276 30 0 0 chr1 98688250 98688283 -183505381 + (TA)n Simple_repeat Simple_repeat 2 34 0 1804 277 126 46 chr1 98688519 98689347 -183504317 + L1ME LINE L1 2864 3624 -2505 186 43 0 0 chr1 98689347 98689370 -183504294 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1804 277 126 46 chr1 98689370 98690593 -183503071 + L1ME LINE L1 3624 5079 -1050 405 276 81 34 chr1 98690690 98691015 -183502649 + L1P5 LINE L1 5258 5599 -552 910 203 31 4 chr1 98691086 98691313 -183502351 + Charlie1 DNA MER1_type 2351 2583 -178 1298 203 40 37 chr1 98691332 98691653 -183502011 - MLT1A1 LTR MaLR -41 324 3 693 223 5 27 chr1 98691655 98691843 -183501821 + Charlie1 DNA MER1_type 2578 2761 0 301 238 50 0 chr1 98691940 98692020 -183501644 + L1ME LINE L1 5708 5791 -354 520 97 0 23 chr1 98692417 98692517 -183501147 - L1MA8 LINE L1 -131 6160 6079 236 233 33 17 chr1 98692585 98692645 -183501019 + GA-rich Low_complexity Low_complexity 6 66 0 373 333 75 36 chr1 98694346 98694598 -183499066 + MIR SINE MIR 1 262 0 274 298 155 22 chr1 98694763 98694944 -183498720 - MIR SINE MIR -12 250 46 1983 246 20 18 chr1 98695237 98695791 -183497873 + L1MB8 LINE L1 5615 6169 -9 24 53 0 0 chr1 98695983 98696021 -183497643 + AT_rich Low_complexity Low_complexity 1 38 0 573 55 0 0 chr1 98696981 98697054 -183496610 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 1705 125 0 12 chr1 98697055 98697311 -183496353 - AluSx SINE Alu -26 286 34 432 0 0 0 chr1 98697939 98697987 -183495677 + (TG)n Simple_repeat Simple_repeat 2 49 0 509 283 128 22 chr1 98698738 98699121 -183494543 - Charlie8 DNA MER1_type -12 2405 97 2228 114 3 0 chr1 98699142 98699449 -183494215 + AluSg SINE Alu 1 308 -2 199 366 12 0 chr1 98699636 98699718 -183493946 + L3 LINE CR1 1279 1361 -216 607 330 69 0 chr1 98700022 98700240 -183493424 + MIR SINE MIR 25 257 -5 289 323 0 0 chr1 98700355 98700417 -183493247 + L2 LINE L2 3147 3208 -64 403 267 0 35 chr1 98701810 98701926 -183491738 + MER5A DNA MER1_type 1 112 -77 290 256 100 11 chr1 98701915 98702005 -183491659 + L2 LINE L2 3173 3270 -2 * 187 301 108 104 chr1 98704225 98704474 -183489190 - MIR SINE MIR -11 251 2 317 254 0 0 chr1 98704837 98704904 -183488760 + L2 LINE L2 3202 3268 -4 266 306 63 18 chr1 98707142 98707253 -183486411 + L2 LINE L2 3141 3256 -16 342 292 149 15 chr1 98710443 98710638 -183483026 - MIR SINE MIR -40 222 2 382 314 113 16 chr1 98711242 98711366 -183482298 - L2 LINE L2 -4 3268 3133 437 179 52 75 chr1 98713175 98713309 -183480355 + MER69 DNA AcHobo 2396 2526 0 197 288 80 90 chr1 98713457 98713669 -183479995 + L2 LINE L2 2393 2602 -712 26 64 0 0 chr1 98713779 98713826 -183479838 + AT_rich Low_complexity Low_complexity 1 47 0 297 75 0 0 chr1 98714252 98714292 -183479372 + (TCCA)n Simple_repeat Simple_repeat 4 43 0 288 334 184 22 chr1 98714494 98714853 -183478811 - L2 LINE L2 -40 3232 2816 536 255 28 67 chr1 98718367 98718622 -183475042 + MER112 DNA MER1_type 15 259 -1 491 219 65 22 chr1 98718640 98718799 -183474865 - MIR SINE MIR -4 258 15 304 306 67 108 chr1 98719140 98719408 -183474256 + L2 LINE L2 2818 3074 -198 32 0 0 0 chr1 98719990 98720022 -183473642 + AT_rich Low_complexity Low_complexity 1 32 0 685 283 101 7 chr1 98720207 98720515 -183473149 - MLT2C1 LTR ERVL 0 397 61 9598 193 38 30 chr1 98720543 98722634 -183471030 - ERVL-C1 LTR ERVL -8 5756 3648 222 262 0 0 chr1 98722635 98722719 -183470945 + (TG)n Simple_repeat Simple_repeat 2 85 0 280 315 125 46 chr1 98723545 98723761 -183469903 - MIR SINE MIR -21 241 9 315 302 52 9 chr1 98723884 98724000 -183469664 + MIR SINE MIR 48 168 -94 440 323 16 0 chr1 98724292 98724416 -183469248 + MIR3 SINE MIR 73 198 -10 318 306 124 32 chr1 98726652 98726838 -183466826 - MIR SINE MIR -50 212 10 570 176 8 24 chr1 98727149 98727274 -183466390 + Charlie5 DNA MER1_type 1 123 -2489 1199 199 118 17 chr1 98727274 98727630 -183466034 + Charlie5 DNA MER1_type 2233 2624 0 487 216 40 24 chr1 98727939 98728064 -183465600 + LTR52-int LTR ERVL 1731 1857 -1699 953 233 47 24 chr1 98728076 98728372 -183465292 + LTR52 LTR ERVL 119 421 0 610 280 130 69 chr1 98728409 98728864 -183464800 - L1MEd LINE L1 -954 1536 1110 2179 102 0 0 chr1 98728864 98729148 -183464516 + AluY SINE Alu 14 297 -14 610 280 130 69 chr1 98729148 98729372 -183464292 - L1MEd LINE L1 -1380 1110 901 2392 80 3 0 chr1 98729372 98729671 -183463993 - AluSp SINE Alu -12 301 2 610 280 130 69 chr1 98729671 98730351 -183463313 - L1MEd LINE L1 -1589 901 2 210 150 0 0 chr1 98731394 98731434 -183462230 + (CA)n Simple_repeat Simple_repeat 2 41 0 183 365 96 9 chr1 98733250 98733365 -183460299 - L2 LINE L2 -10 3303 3179 2122 121 0 29 chr1 98733390 98733697 -183459967 + AluSx SINE Alu 3 300 -12 281 333 63 42 chr1 98734007 98734244 -183459420 - L2 LINE L2 -441 2873 2632 182 362 58 43 chr1 98734878 98735135 -183458529 + L2 LINE L2 2716 2976 -338 511 322 34 7 chr1 98735348 98735494 -183458170 + L2 LINE L2 3118 3267 -5 305 294 0 0 chr1 98737045 98737113 -183456551 + L2 LINE L2 3187 3254 -18 1332 201 51 61 chr1 98737193 98737587 -183456077 - MLT1B LTR MaLR 0 390 1 2235 120 13 0 chr1 98737628 98737937 -183455727 + AluSq SINE Alu 1 313 0 315 340 177 0 chr1 98738003 98738144 -183455520 + MIR3 SINE MIR 33 198 -10 277 256 8 103 chr1 98738320 98738437 -183455227 + L2 LINE L2 3204 3309 -4 2048 140 49 22 chr1 98739098 98739463 -183454201 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr1 98740644 98740665 -183452999 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr1 98741979 98742023 -183451641 + AT_rich Low_complexity Low_complexity 1 44 0 29 60 0 0 chr1 98742184 98742234 -183451430 + AT_rich Low_complexity Low_complexity 1 50 0 754 156 0 0 chr1 98742752 98742893 -183450771 + MER53 DNA DNA 38 178 -11 198 0 0 0 chr1 98742968 98742990 -183450674 + (TG)n Simple_repeat Simple_repeat 2 23 0 192 373 127 0 chr1 98743019 98743129 -183450535 - L3 LINE CR1 -39 1538 1415 256 276 33 42 chr1 98743170 98743379 -183450285 - L3 LINE CR1 -257 1320 1143 814 245 179 70 chr1 98743575 98744004 -183449660 - L2 LINE L2 0 3313 2838 288 53 0 0 chr1 98794773 98794811 -183398853 + (TG)n Simple_repeat Simple_repeat 2 39 0 26 30 0 0 chr1 98795990 98796023 -183397641 + AT_rich Low_complexity Low_complexity 1 33 0 528 303 13 0 chr1 98796188 98796343 -183397321 + MIR SINE MIR 100 256 -6 291 93 0 0 chr1 98796345 98796388 -183397276 + (ATG)n Simple_repeat Simple_repeat 1 43 0 283 360 30 10 chr1 98796426 98796526 -183397138 + L2 LINE L2 3169 3270 -2 551 231 21 4 chr1 98796863 98797106 -183396558 + CT-rich Low_complexity Low_complexity 1 247 0 252 243 95 41 chr1 98797968 98798137 -183395527 + L2 LINE L2 3049 3226 -87 308 252 8 46 chr1 98798210 98798341 -183395323 + L1ME3A LINE L1 6045 6170 0 222 336 126 14 chr1 98799974 98800117 -183393547 + MIR SINE MIR 34 192 -70 342 45 0 0 chr1 98802262 98802306 -183391358 + (CA)n Simple_repeat Simple_repeat 2 45 0 183 162 0 0 chr1 98802307 98802344 -183391320 + (CCA)n Simple_repeat Simple_repeat 3 39 0 1797 131 10 69 chr1 98802876 98803182 -183390482 + AluSx SINE Alu 3 290 -22 198 0 0 0 chr1 98803186 98803208 -183390456 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2834 7 0 0 chr1 98805666 98805971 -183387693 - AluYa5 SINE Alu -6 305 1 1165 292 79 41 chr1 98807049 98807617 -183386047 - Charlie7 DNA MER1_type -1927 685 87 2561 30 0 61 chr1 98807617 98807945 -183385719 + AluY SINE Alu 1 308 -3 1165 292 79 41 chr1 98807945 98808036 -183385628 - Charlie7 DNA MER1_type -2525 87 1 240 35 0 0 chr1 98808161 98808190 -183385474 + (TA)n Simple_repeat Simple_repeat 2 30 0 256 322 109 42 chr1 98808342 98808625 -183385039 + L2 LINE L2 2560 2861 -453 286 250 50 83 chr1 98808963 98809083 -183384581 - L2 LINE L2 -11 3302 3187 22 0 0 0 chr1 98809286 98809308 -183384356 + AT_rich Low_complexity Low_complexity 1 22 0 706 297 26 0 chr1 98809667 98809859 -183383805 - MIR SINE MIR -28 234 38 491 275 115 40 chr1 98810625 98810825 -183382839 + MIR SINE MIR 32 246 -16 22 35 0 0 chr1 98811470 98811499 -183382165 + AT_rich Low_complexity Low_complexity 1 29 0 396 301 18 0 chr1 98811645 98811758 -183381906 - MIR SINE MIR -86 176 62 2844 3 0 0 chr1 98811856 98812161 -183381503 - AluYb8 SINE Alu -13 305 1 244 167 56 19 chr1 98812804 98812858 -183380806 + MARNA DNA Mariner 9 64 -522 317 286 126 8 chr1 98814753 98814885 -183378779 + MIR3 SINE MIR 9 152 -67 404 345 42 5 chr1 98815061 98815252 -183378412 - MIR SINE MIR 0 262 65 677 268 32 78 chr1 98817511 98817795 -183375869 - MER115 DNA AcHobo -421 272 2 189 195 0 0 chr1 98818157 98818198 -183375466 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 181 302 12 58 chr1 98820579 98820665 -183372999 - MIR SINE MIR -21 241 160 23 33 0 0 chr1 98821089 98821119 -183372545 + AT_rich Low_complexity Low_complexity 1 30 0 468 277 23 0 chr1 98823076 98823206 -183370458 - L2 LINE L2 -2 3311 3179 1613 247 39 25 chr1 98823643 98824137 -183369527 - MLT1D LTR MaLR -6 490 1 384 328 53 32 chr1 98824138 98824476 -183369188 - L1MC/D LINE L1 -2059 5749 5405 374 257 66 59 chr1 98825004 98825156 -183368508 + HAL1 LINE L1 813 965 -1542 359 331 143 25 chr1 98825233 98825547 -183368117 + L1ME4a LINE L1 5771 6121 0 2218 108 26 0 chr1 98826823 98827128 -183366536 + AluSq SINE Alu 1 313 0 828 228 56 6 chr1 98827130 98827310 -183366354 + MIR SINE MIR 25 213 -49 6457 225 51 30 chr1 98827485 98827609 -183366055 - L1MB7 LINE L1 -326 6356 6236 726 197 0 0 chr1 98827609 98827731 -183365933 - FLAM_A SINE Alu -11 122 1 6457 225 51 30 chr1 98827731 98830218 -183363446 - L1MB7 LINE L1 -446 6236 3685 5162 213 54 38 chr1 98830204 98830600 -183363064 - L1MB7 LINE L1 -5082 1460 1072 * 284 0 28 0 chr1 98830600 98830636 -183363028 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5162 213 54 38 chr1 98830636 98831674 -183361990 - L1MB7 LINE L1 -5470 1072 3 764 297 35 9 chr1 98836614 98836846 -183356818 + MIR SINE MIR 3 240 -22 374 321 103 22 chr1 98837113 98837297 -183356367 + MIR SINE MIR 32 230 -32 582 268 128 0 chr1 98837866 98838030 -183355634 - MIR3 SINE MIR -10 198 14 183 80 0 0 chr1 98838260 98838285 -183355379 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr1 98838360 98838383 -183355281 + AT_rich Low_complexity Low_complexity 1 23 0 318 321 27 9 chr1 98838724 98838836 -183354828 + L1MC4 LINE L1 6590 6703 -1339 663 262 99 6 chr1 98838847 98839019 -183354645 - MIR SINE MIR -74 188 1 37 23 0 0 chr1 98839185 98839229 -183354435 + AT_rich Low_complexity Low_complexity 1 44 0 545 89 13 0 chr1 98839518 98839597 -183354067 + MADE1 DNA Mariner 1 80 0 538 89 0 13 chr1 98839753 98839832 -183353832 - MADE1 DNA Mariner -2 78 1 2021 127 0 3 chr1 98841024 98841316 -183352348 - AluSc SINE Alu -18 291 1 294 351 27 0 chr1 98841430 98841541 -183352123 + MIR3 SINE MIR 77 190 -18 687 185 8 15 chr1 98841565 98841695 -183351969 - FLAM_A SINE Alu -3 130 2 1380 279 111 62 chr1 98841883 98842543 -183351121 - MER115 DNA AcHobo -1 692 1 776 190 38 13 chr1 98842656 98842814 -183350850 + MLT2C1 LTR ERVL 228 389 -8 291 296 75 43 chr1 98842993 98843179 -183350485 + MIR SINE MIR 10 201 -61 464 264 130 38 chr1 98843311 98843550 -183350114 + MIR SINE MIR 2 262 0 230 309 0 0 chr1 98843575 98843630 -183350034 - L2 LINE L2 -4 3309 3255 274 339 38 38 chr1 98845195 98845330 -183348334 + MIR SINE MIR 17 150 -67 532 184 0 0 chr1 98845463 98845550 -183348114 - MER94 DNA DNA -4 130 44 28 48 0 0 chr1 98845892 98845934 -183347730 + AT_rich Low_complexity Low_complexity 1 42 0 1885 175 3 7 chr1 98847183 98847492 -183346172 + AluSx SINE Alu 2 309 -3 551 259 104 41 chr1 98848042 98848262 -183345402 + L1MEd LINE L1 895 1128 -4991 28 0 0 0 chr1 98848262 98848290 -183345374 + AT_rich Low_complexity Low_complexity 1 28 0 45 75 0 0 chr1 98848732 98848826 -183344838 + AT_rich Low_complexity Low_complexity 1 94 0 746 165 16 0 chr1 98848940 98849067 -183344597 + AluJo SINE Alu 7 135 -177 256 322 60 54 chr1 98849897 98850046 -183343618 - MIR SINE MIR -5 257 108 927 119 0 0 chr1 98850214 98850340 -183343324 - AluSg SINE Alu -16 294 169 1190 110 12 0 chr1 98850503 98850667 -183342997 - AluSg SINE Alu -144 166 1 25 0 0 0 chr1 98850785 98850810 -183342854 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr1 98850818 98850838 -183342826 + (TA)n Simple_repeat Simple_repeat 1 20 0 195 204 0 0 chr1 98852012 98852061 -183341603 + (CATA)n Simple_repeat Simple_repeat 2 50 0 286 320 0 29 chr1 98852208 98852311 -183341353 - L2 LINE L2 0 3272 3173 2376 51 0 42 chr1 98852446 98852757 -183340907 + AluY SINE Alu 1 298 -13 225 357 71 0 chr1 98856960 98857044 -183336620 - L2 LINE L2 -18 3254 3165 193 364 28 56 chr1 98857286 98857429 -183336235 - L2 LINE L2 -25 3247 3109 638 284 102 25 chr1 98859463 98859699 -183333965 - MIR SINE MIR -1 261 8 414 333 97 46 chr1 98859696 98860271 -183333393 - L2 LINE L2 -58 3255 2641 * 381 289 35 35 chr1 98860318 98860460 -183333204 - MIR SINE MIR -108 154 13 195 214 114 29 chr1 98860748 98860818 -183332846 + MIR SINE MIR 154 229 -33 620 275 49 20 chr1 98861376 98861623 -183332041 - MER112 DNA MER1_type -2 254 1 487 256 101 0 chr1 98861978 98862107 -183331557 - MIR SINE MIR -10 252 111 333 0 0 0 chr1 98862237 98862274 -183331390 + (TG)n Simple_repeat Simple_repeat 2 38 0 195 139 0 0 chr1 98862275 98862311 -183331353 + (GA)n Simple_repeat Simple_repeat 2 37 0 2133 138 7 0 chr1 98862651 98862956 -183330708 - AluSx SINE Alu -5 307 1 368 338 45 5 chr1 98863606 98863804 -183329860 + L2 LINE L2 3098 3303 -10 339 330 51 10 chr1 98864461 98864658 -183329006 - L2 LINE L2 -11 3302 3098 605 322 130 48 chr1 98865427 98866191 -183327473 - L2 LINE L2 -1 3271 2446 353 333 29 7 chr1 98866599 98866737 -183326927 + MIR3 SINE MIR 3 143 -65 210 71 0 0 chr1 98866898 98866926 -183326738 + (CA)n Simple_repeat Simple_repeat 1 28 0 284 329 95 0 chr1 98867017 98867154 -183326510 - MLT1J LTR MaLR -125 386 237 2172 112 0 0 chr1 98867648 98867942 -183325722 + AluSg SINE Alu 1 294 -16 2373 87 0 28 chr1 98869534 98869856 -183323808 - AluSq SINE Alu 0 313 1 253 137 233 41 chr1 98871034 98871107 -183322557 + MIR SINE MIR 58 144 -118 761 220 6 17 chr1 98871231 98871408 -183322256 - MER5B DNA MER1_type -3 175 1 395 303 171 7 chr1 98871541 98871693 -183321971 + MER5A DNA MER1_type 13 189 0 249 33 0 0 chr1 98871708 98871738 -183321926 + (TC)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr1 98871858 98871879 -183321785 + (T)n Simple_repeat Simple_repeat 1 21 0 220 195 0 0 chr1 98874912 98874953 -183318711 + (CA)n Simple_repeat Simple_repeat 2 42 0 209 161 0 0 chr1 98875447 98875478 -183318186 + polypyrimidine Low_complexity Low_complexity 3 33 0 334 231 252 21 chr1 98875531 98875674 -183317990 + MIR3 SINE MIR 21 196 -12 215 326 41 58 chr1 98875814 98875986 -183317678 - L3b LINE CR1 -185 1398 1230 1569 96 0 5 chr1 98876917 98877125 -183316539 + AluSg/x SINE Alu 102 308 -4 231 253 84 32 chr1 98877247 98877342 -183316322 - MIR SINE MIR 0 262 163 436 278 152 15 chr1 98877342 98877540 -183316124 - MIR SINE MIR -1 261 37 312 359 102 16 chr1 98877529 98877657 -183316007 + L2 LINE L2 3133 3271 -1 * 326 194 0 0 chr1 98877777 98877839 -183315825 - L2 LINE L2 -2 3311 3250 286 188 0 0 chr1 98878588 98878636 -183315028 + L2 LINE L2 3219 3266 -6 336 363 44 19 chr1 98878668 98878828 -183314836 + MIR3 SINE MIR 36 199 -9 485 296 104 26 chr1 98878851 98879081 -183314583 + MIR SINE MIR 10 257 -5 321 241 72 90 chr1 98879396 98879562 -183314102 + MLT1H LTR MaLR 387 549 0 283 335 92 26 chr1 98880523 98880675 -183312989 - MIR SINE MIR -98 164 3 241 314 12 12 chr1 98880681 98880767 -183312897 + MIR SINE MIR 168 253 -9 375 244 92 8 chr1 98881400 98881519 -183312145 + L2 LINE L2 3142 3270 -2 446 285 44 19 chr1 98883110 98883268 -183310396 + MIR SINE MIR 83 244 -18 415 280 53 77 chr1 98884009 98884177 -183309487 + MIR SINE MIR 7 171 -91 871 167 32 16 chr1 98884177 98884363 -183309301 - MER53 DNA DNA 0 189 1 415 280 53 77 chr1 98884363 98884401 -183309263 + MIR SINE MIR 171 208 -54 186 133 0 0 chr1 98885156 98885186 -183308478 + (T)n Simple_repeat Simple_repeat 1 30 0 792 241 64 5 chr1 98886008 98886211 -183307453 + MIR SINE MIR 48 262 0 812 210 6 6 chr1 98887004 98887185 -183306479 - MER45B DNA AcHobo -8 1032 852 2487 209 46 54 chr1 98887217 98887847 -183305817 - MER45B DNA AcHobo -411 629 5 207 176 0 0 chr1 98891106 98891140 -183302524 + (TAGG)n Simple_repeat Simple_repeat 1 34 0 360 252 8 17 chr1 98891634 98891753 -183301911 + (TA)n Simple_repeat Simple_repeat 2 119 0 326 257 14 0 chr1 98891976 98892046 -183301618 + L2 LINE L2 3202 3272 0 1150 262 139 31 chr1 98892179 98892564 -183301100 - MER34 LTR ERV1 0 542 91 2197 135 46 3 chr1 98892564 98892913 -183300751 + THE1B LTR MaLR 1 364 0 1150 262 139 31 chr1 98892913 98893016 -183300648 - MER34 LTR ERV1 -451 91 1 234 0 0 0 chr1 98893153 98893179 -183300485 + (A)n Simple_repeat Simple_repeat 1 26 0 655 305 24 28 chr1 98893267 98893480 -183300184 + MIR SINE MIR 2 213 -49 998 188 65 4 chr1 98895556 98895817 -183297847 - MER33 DNA MER1_type -22 302 26 239 77 0 26 chr1 98897221 98897260 -183296404 + (GAAAA)n Simple_repeat Simple_repeat 5 42 0 2661 162 28 0 chr1 98897629 98898092 -183295572 + L1MC1 LINE L1 5840 6315 -18 254 372 0 0 chr1 98898143 98898229 -183295435 - MIR SINE MIR -66 142 57 361 303 37 0 chr1 98898473 98898582 -183295082 + L2 LINE L2 3160 3272 0 263 211 123 0 chr1 98899834 98899891 -183293773 + L2 LINE L2 3250 3313 0 2019 189 76 2 chr1 98900364 98900761 -183292903 + MSTB LTR MaLR 1 426 0 204 40 0 0 chr1 98902147 98902172 -183291492 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 468 346 75 9 chr1 98903919 98904133 -183289531 + MIR SINE MIR 15 242 -20 877 232 14 32 chr1 98905404 98905624 -183288040 + MER20 DNA MER1_type 1 216 -3 280 348 35 14 chr1 98906092 98906233 -183287431 - MIR3 SINE MIR -7 201 58 462 279 251 1 chr1 98907034 98907209 -183286455 + MIR SINE MIR 25 241 -21 198 315 0 0 chr1 98907175 98907229 -183286435 + L2 LINE L2 3253 3306 -7 * 414 0 0 0 chr1 98908704 98908750 -183284914 + (TC)n Simple_repeat Simple_repeat 2 47 0 448 327 74 22 chr1 98908960 98909229 -183284435 - MLT1I LTR MaLR -20 389 107 250 208 10 158 chr1 98909328 98909386 -183284278 + MIR SINE MIR 52 90 -172 1801 129 111 7 chr1 98909386 98909666 -183283998 + AluSg1 SINE Alu 1 309 0 250 208 10 158 chr1 98909666 98909708 -183283956 + MIR SINE MIR 90 137 -125 427 270 74 58 chr1 98909713 98910099 -183283565 + MLT1I LTR MaLR 20 409 0 239 250 26 13 chr1 98910119 98910195 -183283469 + LTR33A LTR ERVL 447 523 0 238 341 83 23 chr1 98910199 98910331 -183283333 - L2 LINE L2 -200 3072 2933 624 377 49 46 chr1 98910486 98911078 -183282586 - L2 LINE L2 -548 2766 2173 2318 117 8 36 chr1 98911197 98911581 -183282083 + THE1C LTR MaLR 1 373 -2 189 341 45 82 chr1 98912000 98912402 -183281262 - L2 LINE L2 -2303 1011 625 233 233 0 0 chr1 98912530 98912573 -183281091 - MER94 DNA DNA -91 43 1 1265 236 85 57 chr1 98913394 98913831 -183279833 + MLT2B1 LTR ERVL 1 449 -71 192 77 0 0 chr1 98913831 98913857 -183279807 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 385 221 0 39 chr1 98913987 98914091 -183279573 + LTR67 LTR ERVL 458 557 0 208 353 73 59 chr1 98914318 98914757 -183278907 + L3 LINE CR1 300 744 -833 23 39 0 39 chr1 98915263 98915284 -183278380 + AT_rich Low_complexity Low_complexity 1 21 -29 2072 129 4 0 chr1 98915284 98915601 -183278063 + AluSq SINE Alu 3 320 0 23 39 0 39 chr1 98915601 98915630 -183278034 + AT_rich Low_complexity Low_complexity 21 50 0 681 268 91 40 chr1 98915764 98916174 -183277490 - MLT1J2 LTR MaLR -23 423 1 292 259 170 37 chr1 98916303 98916438 -183277226 - MIR SINE MIR -76 186 34 240 288 36 27 chr1 98916580 98916691 -183276973 - MIR SINE MIR -9 253 142 265 302 10 31 chr1 98917988 98918084 -183275580 - L2 LINE L2 0 3313 3220 2227 293 52 47 chr1 98918115 98919246 -183274418 - L2 LINE L2 -197 3116 1988 346 250 170 25 chr1 98919611 98919811 -183273853 - MIR SINE MIR -12 250 22 22 35 0 0 chr1 98920365 98920394 -183273270 + AT_rich Low_complexity Low_complexity 1 29 0 289 348 6 37 chr1 98921599 98921760 -183271904 + MIR SINE MIR 48 203 -59 270 238 0 0 chr1 98922518 98922581 -183271083 + MIR SINE MIR 179 241 -21 206 180 40 0 chr1 98923035 98923085 -183270579 + (TATG)n Simple_repeat Simple_repeat 3 54 0 198 288 14 27 chr1 98923090 98923163 -183270501 - L2 LINE L2 -67 3246 3175 802 192 60 0 chr1 98924166 98924317 -183269347 - FRAM SINE Alu -17 159 1 389 303 26 7 chr1 98924319 98924471 -183269193 - L1MC4a LINE L1 -1983 5825 5671 340 93 56 19 chr1 98924490 98924598 -183269066 + (TA)n Simple_repeat Simple_repeat 2 113 0 23 68 0 0 chr1 98924966 98925010 -183268654 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 98926133 98926155 -183267509 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 98926252 98926274 -183267390 + AT_rich Low_complexity Low_complexity 1 22 0 201 237 0 0 chr1 98927020 98927079 -183266585 + (TA)n Simple_repeat Simple_repeat 1 59 0 291 28 0 0 chr1 98927778 98927814 -183265850 + (CA)n Simple_repeat Simple_repeat 1 36 0 295 303 0 11 chr1 98928661 98928750 -183264914 + GA-rich Low_complexity Low_complexity 4 91 0 701 123 9 0 chr1 98979658 98979764 -183213900 + AluJb SINE Alu 191 297 -15 210 91 0 0 chr1 98981464 98981497 -183212167 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 195 114 0 0 chr1 98985587 98985622 -183208042 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2134 81 0 0 chr1 98985850 98986123 -183207541 - AluY SINE Alu -16 295 23 423 294 33 7 chr1 98990039 98990192 -183203472 + MLT1J2 LTR MaLR 1 157 -293 225 295 0 0 chr1 98990300 98990361 -183203303 + MLT1J2 LTR MaLR 346 406 -44 195 304 244 22 chr1 98990480 98990615 -183203049 - L2 LINE L2 -5 3267 3103 279 0 0 0 chr1 98990998 98991029 -183202635 + (CA)n Simple_repeat Simple_repeat 2 32 0 348 43 0 0 chr1 98992668 98992714 -183200950 + (CA)n Simple_repeat Simple_repeat 1 46 0 231 253 11 23 chr1 98993124 98993211 -183200453 + L1MEd LINE L1 974 1059 -5060 418 335 61 47 chr1 98993255 98993831 -183199833 + HAL1 LINE L1 1185 1768 -739 1738 213 27 5 chr1 98994045 98994421 -183199243 - MER63B DNA MER1_type -52 384 1 25 65 0 0 chr1 98994461 98994507 -183199157 + AT_rich Low_complexity Low_complexity 1 46 0 204 231 0 0 chr1 98994517 98994569 -183199095 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 323 291 126 35 chr1 98994576 98994775 -183198889 + HAL1 LINE L1 880 1096 -1411 332 248 161 27 chr1 98996077 98996226 -183197438 + MIR3 SINE MIR 34 202 -6 1757 252 92 4 chr1 98996738 98997270 -183196394 + MER119 DNA MER1_type 5 583 0 307 145 0 40 chr1 98997359 98997435 -183196229 + (GGA)n Simple_repeat Simple_repeat 3 75 0 266 284 11 11 chr1 98997447 98997535 -183196129 - MIR SINE MIR -1 261 174 195 202 50 118 chr1 98997737 98997856 -183195808 - MIR SINE MIR -22 240 130 1984 116 0 38 chr1 98998707 98998999 -183194665 - AluSc SINE Alu -26 283 3 405 308 60 8 chr1 98999705 98999822 -183193842 - MIR3 SINE MIR -54 154 32 224 336 76 50 chr1 98999942 99000061 -183193603 - L2 LINE L2 -5 3267 3146 235 345 34 34 chr1 99001307 99001426 -183192238 - L2 LINE L2 0 3272 3154 319 314 59 0 chr1 99001763 99001865 -183191799 + MER91C DNA MER1_type 33 140 0 555 233 208 5 chr1 99002062 99002264 -183191400 - MIR SINE MIR -8 254 12 2322 96 0 3 chr1 99002268 99002580 -183191084 + AluY SINE Alu 1 311 0 1604 308 115 23 chr1 99002621 99003648 -183190016 - L2 LINE L2 0 3313 2191 180 269 219 65 chr1 99003648 99003849 -183189815 - L2 LINE L2 -1068 2246 2015 293 341 104 17 chr1 99004000 99004173 -183189491 + MIR SINE MIR 57 244 -18 478 274 99 35 chr1 99004205 99004406 -183189258 + MIR SINE MIR 6 219 -43 1647 203 22 19 chr1 99005450 99005814 -183187850 + MLT1A1 LTR MaLR 1 365 0 356 264 66 0 chr1 99006111 99006202 -183187462 + MIR SINE MIR 93 189 -73 25 31 0 0 chr1 99006445 99006477 -183187187 + AT_rich Low_complexity Low_complexity 1 32 0 365 311 157 56 chr1 99007275 99007581 -183186083 - L2 LINE L2 0 3272 2936 193 257 171 0 chr1 99007581 99007651 -183186013 + L2 LINE L2 3231 3312 -1 449 309 34 47 chr1 99008145 99008294 -183185370 + MER91A DNA MER1_type 28 174 -22 341 280 185 35 chr1 99010009 99010209 -183183455 + MIR SINE MIR 20 249 -13 21 0 0 0 chr1 99011327 99011348 -183182316 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr1 99011847 99011873 -183181791 + (TA)n Simple_repeat Simple_repeat 2 27 0 435 330 109 53 chr1 99012536 99012875 -183180789 - L2 LINE L2 0 3272 2915 2124 120 3 0 chr1 99013512 99013813 -183179851 - AluSx SINE Alu -10 302 1 240 231 46 15 chr1 99013813 99013878 -183179786 + MIR SINE MIR 66 132 -130 868 170 74 84 chr1 99014058 99014381 -183179283 - MER33 DNA MER1_type 0 324 5 2229 102 0 3 chr1 99014668 99014961 -183178703 + AluSg SINE Alu 1 292 -18 386 331 76 7 chr1 99014966 99015111 -183178553 + MIR3 SINE MIR 14 168 -40 529 238 38 12 chr1 99015135 99015295 -183178369 - L1ME1 LINE L1 -7 6159 5996 1352 175 25 66 chr1 99015403 99015723 -183177941 - L1ME1 LINE L1 -554 5610 5304 876 247 84 3 chr1 99015765 99016073 -183177591 - L1ME1 LINE L1 -940 5206 4874 204 40 0 0 chr1 99017291 99017316 -183176348 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr1 99017406 99017428 -183176236 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 99017592 99017613 -183176051 + (TG)n Simple_repeat Simple_repeat 2 22 0 23 78 0 0 chr1 99017803 99017854 -183175810 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 99018213 99018234 -183175430 + AT_rich Low_complexity Low_complexity 1 21 0 1674 177 17 17 chr1 99018562 99018856 -183174808 - AluJo SINE Alu -16 296 3 211 338 14 0 chr1 99018932 99019006 -183174658 + L2 LINE L2 3239 3313 0 611 181 154 33 chr1 99020483 99020665 -183172999 + MIR SINE MIR 56 259 -3 376 311 109 0 chr1 99021331 99021450 -183172214 - L2 LINE L2 -1 3271 3140 515 334 58 65 chr1 99022041 99022454 -183171210 + L2 LINE L2 2851 3260 -12 225 289 19 0 chr1 99022597 99022649 -183171015 - L2 LINE L2 -12 3260 3208 199 306 212 0 chr1 99022631 99022716 -183170948 + MIR SINE MIR 46 148 -114 * 221 278 86 73 chr1 99022865 99023016 -183170648 - L2 LINE L2 -834 2480 2328 398 258 180 12 chr1 99023118 99023285 -183170379 - L2 LINE L2 -1 3312 3118 247 333 104 56 chr1 99023272 99023629 -183170035 - L2 LINE L2 -1068 2246 1873 * 551 53 13 0 chr1 99024456 99024531 -183169133 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 1455 230 0 20 chr1 99027240 99027540 -183166124 + AluJo SINE Alu 2 295 -17 2144 73 234 8 chr1 99027540 99027924 -183165740 - L1PA7 LINE L1 -811 5335 4865 6326 55 9 0 chr1 99027924 99028725 -183164939 + L1PA7 LINE L1 5347 6154 0 353 309 159 0 chr1 99029039 99029165 -183164499 - L2 LINE L2 -5 3267 3122 286 352 30 30 chr1 99029381 99029580 -183164084 - L3b LINE CR1 -233 1350 1152 414 314 92 22 chr1 99030025 99030254 -183163410 + MIR SINE MIR 9 253 -9 517 296 41 6 chr1 99030829 99030998 -183162666 + MLT1L LTR MaLR 410 584 -31 345 262 116 38 chr1 99032233 99032474 -183161190 + MLT1J LTR MaLR 153 476 -35 35 0 0 0 chr1 99033715 99033750 -183159914 + AT_rich Low_complexity Low_complexity 1 35 0 380 227 34 119 chr1 99034401 99034644 -183159020 + L1ME3A LINE L1 5810 6039 -131 182 198 12 35 chr1 99035501 99035587 -183158077 + (TA)n Simple_repeat Simple_repeat 2 85 0 1889 210 78 10 chr1 99036335 99036821 -183156843 + Charlie1b DNA MER1_type 5 523 0 33 25 0 0 chr1 99036956 99036996 -183156668 + AT_rich Low_complexity Low_complexity 1 40 0 371 316 151 5 chr1 99038918 99039136 -183154528 - MIR SINE MIR -1 261 12 2319 124 45 5 chr1 99039142 99039521 -183154143 + MSTA LTR MaLR 1 394 -34 1236 43 0 6 chr1 99040221 99040385 -183153279 + L1P LINE L1 5017 5179 -967 1489 296 104 14 chr1 99040933 99041690 -183151974 + L2 LINE L2 2431 3272 0 209 214 0 36 chr1 99042118 99042174 -183151490 + GA-rich Low_complexity Low_complexity 3 56 0 672 227 52 6 chr1 99045421 99045593 -183148071 + MIR SINE MIR 70 249 -13 1805 172 3 7 chr1 99046749 99047057 -183146607 + AluJb SINE Alu 1 307 -5 584 280 158 22 chr1 99048054 99048365 -183145299 + Charlie7 DNA MER1_type 40 392 -2220 1814 253 169 27 chr1 99048388 99048432 -183145232 + Charlie7 DNA MER1_type 1358 1394 -1218 2316 93 3 0 chr1 99048432 99048732 -183144932 + AluY SINE Alu 1 301 -10 1814 253 169 27 chr1 99048732 99049785 -183143879 + Charlie7 DNA MER1_type 1394 2611 -1 233 219 141 0 chr1 99050057 99050121 -183143543 - L2 LINE L2 0 3313 3241 561 236 91 18 chr1 99050936 99051101 -183142563 - MIR SINE MIR -74 188 12 1282 161 77 7 chr1 99051112 99051393 -183142271 + MER33 DNA MER1_type 1 294 -30 235 257 14 29 chr1 99054149 99054219 -183139445 + GA-rich Low_complexity Low_complexity 5 73 0 267 250 12 25 chr1 99054334 99054414 -183139250 + CT-rich Low_complexity Low_complexity 2 80 0 723 258 14 29 chr1 99054727 99054936 -183138728 - MIR SINE MIR -1 261 56 228 300 0 0 chr1 99059474 99059534 -183134130 + L2 LINE L2 3254 3313 0 238 250 0 0 chr1 99062884 99062928 -183130736 - MIR SINE MIR -157 105 62 26 30 0 0 chr1 99063565 99063598 -183130066 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr1 99064060 99064087 -183129577 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr1 99064140 99064162 -183129502 + (T)n Simple_repeat Simple_repeat 1 22 0 3120 186 23 6 chr1 99067397 99068223 -183125441 + L1MD3 LINE L1 6938 7995 0 258 245 20 20 chr1 99068378 99068476 -183125188 + (CATA)n Simple_repeat Simple_repeat 4 101 0 356 333 40 32 chr1 99068510 99068636 -183125028 - L2 LINE L2 0 3272 3146 511 302 28 39 chr1 99068720 99068902 -183124762 + MIR SINE MIR 32 211 -51 347 323 6 57 chr1 99069097 99069255 -183124409 - MIR SINE MIR -83 179 30 23 0 0 0 chr1 99070017 99070040 -183123624 + AT_rich Low_complexity Low_complexity 1 23 0 200 414 27 0 chr1 99070115 99070226 -183123438 - L2 LINE L2 -235 3037 2924 1458 123 87 0 chr1 99070325 99070566 -183123098 + AluSx SINE Alu 47 306 0 288 250 12 12 chr1 99070810 99070890 -183122774 - LTR33A LTR ERVL 0 523 444 1684 78 22 4 chr1 99071576 99071808 -183121856 + AluY SINE Alu 1 236 -75 2324 73 33 7 chr1 99072143 99072443 -183121221 - AluSp SINE Alu -5 308 1 461 311 104 42 chr1 99072571 99072973 -183120691 + L2 LINE L2 2878 3304 -9 1151 94 0 11 chr1 99072977 99073158 -183120506 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 477 0 0 0 chr1 99074319 99074372 -183119292 + (CA)n Simple_repeat Simple_repeat 2 54 0 842 304 8 8 chr1 99074393 99074640 -183119024 + MIR SINE MIR 3 249 -13 809 189 137 0 chr1 99074824 99074999 -183118665 - MER58A DNA MER1_type -17 207 9 192 272 44 61 chr1 99075065 99075179 -183118485 - L3b LINE CR1 -133 1450 1339 326 313 119 0 chr1 99075339 99075499 -183118165 + L2 LINE L2 2506 2684 -630 199 284 54 14 chr1 99077904 99077978 -183115686 - L2 LINE L2 -7 3265 3189 212 306 0 0 chr1 99079293 99079342 -183114322 - L2 LINE L2 -38 3234 3186 487 271 83 11 chr1 99079585 99079766 -183113898 - MIR SINE MIR -21 241 48 226 286 29 0 chr1 99080671 99080741 -183112923 - MIR SINE MIR -110 152 81 206 232 0 71 chr1 99082880 99082936 -183110728 - L2 LINE L2 0 3313 3262 22 0 0 0 chr1 99083380 99083402 -183110262 + AT_rich Low_complexity Low_complexity 1 22 0 486 273 0 38 chr1 99083430 99083562 -183110102 + L3 LINE CR1 1216 1342 -235 7718 20 0 1 chr1 99083732 99084876 -183108788 + L1PA3 LINE L1 5010 6152 -3 805 263 125 3 chr1 99086520 99086855 -183106809 - L1MDa LINE L1 -4216 2190 1815 1435 134 126 0 chr1 99086892 99087130 -183106534 + AluSg SINE Alu 38 305 -5 1235 190 45 24 chr1 99087141 99087983 -183105681 - L1MDa LINE L1 -4621 1785 855 250 265 73 0 chr1 99088394 99088462 -183105202 + L2 LINE L2 3179 3251 -62 227 305 73 52 chr1 99089612 99089845 -183103819 + L2 LINE L2 2815 3052 -220 238 326 22 0 chr1 99089960 99090052 -183103612 - MER5A DNA MER1_type -5 184 91 1853 201 117 43 chr1 99090052 99090638 -183103026 + MLT1E2 LTR MaLR 3 621 -5 234 186 23 0 chr1 99090642 99090685 -183102979 - MER5A DNA MER1_type -92 97 54 590 283 251 17 chr1 99091357 99091711 -183101953 - L3 LINE CR1 -3 1574 1138 397 303 48 43 chr1 99093511 99093699 -183099965 - MIR SINE MIR -51 211 23 492 319 28 94 chr1 99093814 99094102 -183099562 - L2 LINE L2 0 3272 3004 360 365 58 29 chr1 99094196 99094538 -183099126 - L2 LINE L2 -474 2840 2489 643 282 33 33 chr1 99095055 99095268 -183098396 + MIR SINE MIR 16 228 -34 469 331 41 11 chr1 99096602 99096774 -183096890 - MIR3 SINE MIR -1 207 31 24 53 0 0 chr1 99097521 99097559 -183096105 + AT_rich Low_complexity Low_complexity 1 38 0 313 167 60 36 chr1 99097559 99097643 -183096021 - L1ME4a LINE L1 -4 6117 6032 1323 177 22 0 chr1 99098032 99098303 -183095361 + L1MA9 LINE L1 5996 6272 -40 26 0 0 0 chr1 99098779 99098805 -183094859 + AT_rich Low_complexity Low_complexity 1 26 0 192 77 0 0 chr1 99098877 99098903 -183094761 + (CATA)n Simple_repeat Simple_repeat 2 27 0 292 261 72 14 chr1 99098915 99099053 -183094611 - L1ME LINE L1 -434 5687 5542 386 287 73 37 chr1 99099860 99099939 -183093725 - MIR SINE MIR -89 173 98 234 0 0 0 chr1 99099939 99099965 -183093699 + (TC)n Simple_repeat Simple_repeat 1 26 0 386 287 73 37 chr1 99099965 99100049 -183093615 - MIR SINE MIR -164 98 4 309 386 8 0 chr1 99100508 99100635 -183093029 - MIR3 SINE MIR -48 160 33 2383 59 0 0 chr1 99100808 99101095 -183092569 + AluY SINE Alu 1 287 -24 546 356 55 53 chr1 99101196 99101904 -183091760 - L2 LINE L2 -10 3262 2554 21 0 0 0 chr1 99102391 99102412 -183091252 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 99103067 99103089 -183090575 + AT_rich Low_complexity Low_complexity 1 22 0 1005 293 78 22 chr1 99104251 99104898 -183088766 + L2 LINE L2 2636 3313 0 428 279 16 8 chr1 99104965 99105094 -183088570 + MIR SINE MIR 102 231 -31 213 139 23 0 chr1 99105438 99105481 -183088183 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 539 245 22 0 chr1 99105975 99106114 -183087550 + MER103 DNA DNA 20 161 -5 5734 57 5 4 chr1 99106479 99107236 -183086428 - L1PA7 LINE L1 -20 6134 5377 2407 86 0 3 chr1 99109229 99109532 -183084132 - AluY SINE Alu -9 302 1 27 29 0 0 chr1 99109698 99109732 -183083932 + AT_rich Low_complexity Low_complexity 1 34 0 11934 73 4 7 chr1 99112319 99113064 -183080600 + L1PA7 LINE L1 3506 4252 -1902 2193 100 3 34 chr1 99113064 99113384 -183080280 + AluY SINE Alu 1 310 -1 11934 73 4 7 chr1 99113384 99115302 -183078362 + L1PA7 LINE L1 4252 6141 -13 650 298 89 23 chr1 99115333 99115770 -183077894 + L1MEd LINE L1 456 921 -5198 270 0 0 0 chr1 99115789 99115819 -183077845 + (CA)n Simple_repeat Simple_repeat 2 31 0 342 305 146 20 chr1 99116359 99116605 -183077059 + L1ME3A LINE L1 1008 1284 -5132 315 264 92 61 chr1 99116708 99116871 -183076793 + L1ME3A LINE L1 1138 1305 -5121 340 291 94 5 chr1 99117013 99117236 -183076428 + L1ME3A LINE L1 1724 1966 -4641 431 264 58 6 chr1 99117262 99117436 -183076228 + L1ME3A LINE L1 4780 4962 -1464 308 314 69 25 chr1 99117459 99117618 -183076046 + L1ME3A LINE L1 6065 6230 -220 184 128 21 21 chr1 99117674 99117721 -183075943 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 21 82 0 0 chr1 99117890 99117939 -183075725 + AT_rich Low_complexity Low_complexity 1 49 0 542 171 0 89 chr1 99118118 99118241 -183075423 + MLT1B LTR MaLR 1 112 -278 1622 160 7 28 chr1 99118284 99118571 -183075093 - AluJb SINE Alu -24 288 8 1172 150 3 173 chr1 99118578 99118931 -183074733 + MLT1B LTR MaLR 98 390 0 22 70 0 0 chr1 99119539 99119582 -183074082 + AT_rich Low_complexity Low_complexity 1 43 0 240 275 158 25 chr1 99119780 99119900 -183073764 + MIR SINE MIR 117 252 -10 23 33 0 0 chr1 99120137 99120167 -183073497 + AT_rich Low_complexity Low_complexity 1 30 0 786 327 175 31 chr1 99120266 99121215 -183072449 - L3 LINE CR1 -16 1561 476 1662 171 0 30 chr1 99121329 99121633 -183072031 - AluJb SINE Alu -17 295 1 308 189 14 0 chr1 99121801 99121875 -183071789 + GA-rich Low_complexity Low_complexity 4 78 0 372 339 134 31 chr1 99122480 99123051 -183070613 + L2 LINE L2 2438 3064 -208 77 31 0 0 chr1 99123322 99123420 -183070244 + AT_rich Low_complexity Low_complexity 1 98 0 577 298 101 74 chr1 99123482 99124006 -183069658 - L2 LINE L2 -38 3275 2738 186 328 82 0 chr1 99124087 99124148 -183069516 + L2 LINE L2 2577 2642 -672 1905 228 93 39 chr1 99124707 99125727 -183067937 - L1ME1 LINE L1 -76 6159 5055 3076 275 90 46 chr1 99125735 99128810 -183064854 - L1ME1 LINE L1 -3024 3191 37 848 235 95 5 chr1 99129365 99129586 -183064078 - MIR SINE MIR -10 252 12 444 325 123 7 chr1 99129595 99129749 -183063915 + MER5B DNA MER1_type 7 178 0 507 277 174 62 chr1 99130763 99130828 -183062836 - MLT1I LTR MaLR 0 409 353 997 40 0 8 chr1 99130828 99130973 -183062691 - L1PA2 LINE L1 0 6155 6021 507 277 174 62 chr1 99130973 99131275 -183062389 - MLT1I LTR MaLR -56 353 1 226 183 17 33 chr1 99132310 99132370 -183061294 - MLT1I-int LTR MaLR -1674 61 3 1103 284 65 29 chr1 99132371 99132755 -183060909 - MLT1I LTR MaLR 0 409 12 23 0 0 0 chr1 99134211 99134234 -183059430 + AT_rich Low_complexity Low_complexity 1 23 0 602 257 115 59 chr1 99134373 99134787 -183058877 + MLT1H LTR MaLR 102 542 0 25 31 0 0 chr1 99136032 99136064 -183057600 + AT_rich Low_complexity Low_complexity 1 32 0 1046 95 7 0 chr1 99136831 99136979 -183056685 - L1MA2 LINE L1 0 6304 6156 1050 45 8 0 chr1 99136979 99137112 -183056552 + L1MA3 LINE L1 5867 6000 -305 243 282 24 81 chr1 99138710 99138834 -183054830 - MIR SINE MIR -46 216 100 408 268 111 7 chr1 99139613 99139766 -183053898 + MIR SINE MIR 32 200 -62 285 337 72 30 chr1 99140895 99141061 -183052603 + MIR SINE MIR 35 207 -55 21 36 0 0 chr1 99143091 99143119 -183050545 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr1 99143290 99143311 -183050353 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 213 253 101 20 chr1 99145639 99145738 -183047926 - MIR SINE MIR 0 262 156 207 246 72 29 chr1 99146173 99146242 -183047422 + L2 LINE L2 3241 3312 -1 378 0 0 0 chr1 99146364 99146406 -183047258 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr1 99146405 99146431 -183047233 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 2306 106 0 10 chr1 99147179 99147519 -183046145 - AluSx SINE Alu 0 312 1 243 0 0 0 chr1 99148279 99148306 -183045358 + (A)n Simple_repeat Simple_repeat 1 27 0 1707 171 3 16 chr1 99148872 99149177 -183044487 + AluJb SINE Alu 1 301 -11 609 264 105 42 chr1 99149402 99149641 -183044023 + MIR SINE MIR 2 255 -7 1867 95 0 4 chr1 99149859 99150101 -183043563 + AluSx SINE Alu 4 244 -68 2303 120 8 37 chr1 99150534 99150909 -183042755 - THE1B LTR MaLR 0 364 1 688 269 12 6 chr1 99151450 99151621 -183042043 + L3 LINE CR1 630 801 -776 629 350 100 25 chr1 99151621 99151981 -183041683 + L3 LINE CR1 1054 1440 -137 343 245 86 36 chr1 99152232 99152371 -183041293 - MIR SINE MIR 0 262 117 284 331 111 36 chr1 99152469 99152829 -183040835 + L2 LINE L2 2921 3307 -6 234 272 12 62 chr1 99152972 99153053 -183040611 + L2 LINE L2 2714 2790 -524 549 289 199 39 chr1 99153700 99154168 -183039496 + L1ME4a LINE L1 5522 6064 -57 21 0 0 0 chr1 99154197 99154218 -183039446 + AT_rich Low_complexity Low_complexity 1 21 0 1710 161 26 108 chr1 99154987 99155515 -183038149 - MER31A LTR ERV1 0 485 1 248 402 9 0 chr1 99155766 99155873 -183037791 + MIR SINE MIR 34 141 -67 911 172 52 6 chr1 99155977 99156151 -183037513 + MER20 DNA MER1_type 33 214 -5 21 0 0 0 chr1 99156990 99157011 -183036653 + AT_rich Low_complexity Low_complexity 1 21 0 345 302 107 12 chr1 99157753 99157922 -183035742 + MIR SINE MIR 28 212 -50 2364 66 13 3 chr1 99159518 99159819 -183033845 - AluY SINE Alu -7 304 1 913 208 0 0 chr1 99160054 99160227 -183033437 - FRAM SINE Alu -3 173 1 283 313 64 31 chr1 99160356 99160513 -183033151 + MIR SINE MIR 41 200 -62 422 254 76 8 chr1 99160746 99160864 -183032800 - L2 LINE L2 0 3313 3188 205 250 0 19 chr1 99161030 99161082 -183032582 + L2 LINE L2 3257 3307 -6 602 249 76 25 chr1 99163826 99164023 -183029641 - MIR SINE MIR -40 222 16 237 108 0 0 chr1 99166481 99166518 -183027146 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 99166727 99166750 -183026914 + AT_rich Low_complexity Low_complexity 1 23 0 933 207 44 121 chr1 99167099 99167486 -183026178 + MER39 LTR ERV1 331 687 -20 229 216 0 0 chr1 99168399 99168450 -183025214 + A-rich Low_complexity Low_complexity 1 51 0 578 309 38 49 chr1 99170270 99170535 -183023129 - MIR SINE MIR 0 262 1 901 176 78 21 chr1 99170702 99170895 -183022769 + MER3 DNA MER1_type 1 204 -5 306 256 44 33 chr1 99170941 99171031 -183022633 - L2 LINE L2 0 3313 3223 627 313 74 68 chr1 99171041 99171677 -183021987 - L2 LINE L2 -1224 2090 1451 2160 110 32 0 chr1 99173146 99173428 -183020236 + AluSc SINE Alu 1 291 -18 24 0 0 0 chr1 99173428 99173452 -183020212 + AT_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr1 99173452 99173489 -183020175 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr1 99174744 99174766 -183018898 + AT_rich Low_complexity Low_complexity 1 22 0 328 288 36 22 chr1 99176152 99176291 -183017373 + MLT1L LTR MaLR 138 278 -337 312 307 117 22 chr1 99177947 99178084 -183015580 + L2 LINE L2 2943 3092 -180 207 352 48 29 chr1 99179091 99179196 -183014468 - L2 LINE L2 -13 3300 3194 838 281 192 13 chr1 99180413 99180794 -183012870 - L2 LINE L2 0 3313 2865 3686 106 2 4 chr1 99180914 99181426 -183012238 - MER9 LTR ERVK 0 511 1 2362 256 134 39 chr1 99182110 99183234 -183010430 + L2 LINE L2 2022 3237 -76 190 212 76 45 chr1 99183269 99183335 -183010329 + L2 LINE L2 3245 3312 -1 641 260 93 45 chr1 99183519 99183765 -183009899 + MIR SINE MIR 2 259 -3 281 218 0 39 chr1 99183968 99184046 -183009618 - MER116 DNA Mariner -5 75 1 781 81 16 0 chr1 99184354 99184477 -183009187 + (TAGA)n Simple_repeat Simple_repeat 1 125 0 333 68 0 0 chr1 99184683 99184727 -183008937 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 805 236 6 6 chr1 99184816 99184998 -183008666 - MLT2C2 LTR ERVL -48 416 235 1721 194 102 21 chr1 99185009 99185441 -183008223 + MLT1C LTR MaLR 1 467 0 409 312 41 64 chr1 99185505 99185800 -183007864 + L2 LINE L2 2534 2821 -493 237 33 0 0 chr1 99188121 99188151 -183005513 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 309 181 11 chr1 99188161 99188255 -183005409 - MIR SINE MIR -148 114 5 196 313 36 24 chr1 99188295 99188378 -183005286 + MIR SINE MIR 86 169 -93 2290 102 0 0 chr1 99190779 99191073 -183002591 - AluSg SINE Alu -16 294 1 306 0 0 0 chr1 99191427 99191461 -183002203 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 99192499 99192520 -183001144 + AT_rich Low_complexity Low_complexity 1 21 0 203 288 0 51 chr1 99193487 99193546 -183000118 - L2 LINE L2 -10 3262 3207 362 182 65 13 chr1 99193575 99193652 -183000012 + MIR SINE MIR 171 251 -11 308 308 50 17 chr1 99193772 99193892 -182999772 + L2 LINE L2 3149 3272 0 267 355 14 7 chr1 99194572 99194710 -182998954 + LTR67 LTR ERVL 418 556 -1 203 254 68 17 chr1 99194754 99194813 -182998851 + MIR SINE MIR 42 103 -159 1325 174 105 21 chr1 99194824 99195155 -182998509 - MSTA LTR MaLR 0 428 25 2031 133 52 17 chr1 99195155 99195517 -182998147 - THE1C LTR MaLR 0 375 1 1325 174 105 21 chr1 99195517 99195529 -182998135 - MSTA LTR MaLR -403 25 15 237 345 44 0 chr1 99195532 99195645 -182998019 + MIR SINE MIR 144 261 -1 900 254 97 69 chr1 99196854 99197361 -182996303 + MLT1H LTR MaLR 27 547 -8 181 291 25 25 chr1 99197623 99197702 -182995962 + MIR SINE MIR 38 116 -92 284 148 37 0 chr1 99197752 99197806 -182995858 - MER94 DNA DNA -78 56 1 482 259 61 15 chr1 99198409 99198540 -182995124 - MIR SINE MIR -108 154 18 277 295 21 167 chr1 99200234 99200443 -182993221 - L2 LINE L2 -57 3215 3072 1613 217 66 10 chr1 99200443 99200835 -182992829 - MLT2D LTR ERVL 0 414 1 277 295 21 167 chr1 99200835 99200961 -182992703 - L2 LINE L2 -200 3072 2929 460 220 18 28 chr1 99200976 99201085 -182992579 + L2 LINE L2 3200 3307 -6 792 203 7 26 chr1 99201330 99201509 -182992155 - FRAM SINE Alu 0 172 1 1764 149 75 37 chr1 99202202 99202578 -182991086 + MLT1B LTR MaLR 1 390 0 409 225 23 70 chr1 99202989 99203118 -182990546 - MIR SINE MIR -65 197 75 273 192 10 125 chr1 99203125 99203180 -182990484 + MLT1J2 LTR MaLR 1 40 -410 1177 228 0 0 chr1 99203180 99203404 -182990260 + MER58A DNA MER1_type 1 224 0 273 192 10 125 chr1 99203404 99203452 -182990212 + MLT1J2 LTR MaLR 40 92 -358 310 318 127 5 chr1 99203459 99203648 -182990016 + MLT1J2 LTR MaLR 202 413 -37 180 0 0 0 chr1 99204350 99204370 -182989294 + (TTA)n Simple_repeat Simple_repeat 2 21 0 594 311 52 12 chr1 99206791 99207039 -182986625 + MIR SINE MIR 2 259 -3 894 311 92 20 chr1 99207039 99207431 -182986233 - L2 LINE L2 -1 3312 2893 198 292 67 79 chr1 99207447 99207536 -182986128 + MER5A DNA MER1_type 86 173 -16 254 222 28 0 chr1 99209189 99209261 -182984403 - MER117 DNA MER1_type -113 84 11 234 278 189 11 chr1 99209464 99209554 -182984110 + L2 LINE L2 3193 3298 -15 209 377 55 41 chr1 99209616 99209762 -182983902 - L2 LINE L2 -182 3090 2943 650 259 93 23 chr1 99209946 99210417 -182983247 + L1ME4a LINE L1 5615 6118 -3 2191 98 0 7 chr1 99211092 99211387 -182982277 - AluSx SINE Alu -19 293 1 327 263 13 0 chr1 99211587 99211663 -182982001 + L2 LINE L2 3233 3309 -4 379 254 56 36 chr1 99211873 99212025 -182981639 + MIR SINE MIR 3 163 -62 348 291 12 0 chr1 99212241 99212327 -182981337 - MIR SINE MIR -114 148 62 465 137 14 178 chr1 99212350 99212496 -182981168 - MLT1C LTR MaLR -343 124 3 28677 33 13 1 chr1 99213226 99219251 -182974413 + L1PA2 LINE L1 4 6150 -5 27 0 0 0 chr1 99219251 99219278 -182974386 + AT_rich Low_complexity Low_complexity 1 27 0 2186 103 23 54 chr1 99220921 99221308 -182972356 - THE1C LTR MaLR 0 375 1 246 302 106 28 chr1 99221309 99221630 -182972034 + L1M4 LINE L1 4505 4850 -1296 228 131 33 33 chr1 99221844 99221905 -182971759 + GA-rich Low_complexity Low_complexity 2 62 0 372 220 100 20 chr1 99222260 99222360 -182971304 - Charlie8 DNA MER1_type -2195 222 115 227 345 160 0 chr1 99222738 99222857 -182970807 + L2 LINE L2 2933 3070 -202 336 247 155 0 chr1 99222866 99222963 -182970701 - L2 LINE L2 -10 3303 3192 225 323 54 23 chr1 99224429 99224559 -182969105 - L2 LINE L2 -2 3270 3137 205 103 0 51 chr1 99225154 99225193 -182968471 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1280 294 46 5 chr1 99226470 99226902 -182966762 + LTR16A LTR ERVL 1 450 0 452 316 72 24 chr1 99229400 99229609 -182964055 + HAL1 LINE L1 1136 1354 -1153 446 267 68 23 chr1 99229622 99229843 -182963821 + HAL1 LINE L1 1554 1784 -723 234 261 76 43 chr1 99230288 99230472 -182963192 + HAL1b LINE L1 748 937 -411 357 357 32 11 chr1 99230561 99230746 -182962918 + HAL1 LINE L1 2245 2433 -74 303 238 24 36 chr1 99231185 99231269 -182962395 - MLT1K LTR MaLR 0 588 506 262 279 68 84 chr1 99232108 99232359 -182961305 - MARNA DNA Mariner -204 382 136 183 42 0 0 chr1 99232381 99232405 -182961259 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5997 135 13 9 chr1 99232405 99233861 -182959803 - L1PB2 LINE L1 -6 6145 4685 356 194 0 0 chr1 99233914 99233986 -182959678 - L1PB1 LINE L1 -123 6028 5957 619 274 18 6 chr1 99234062 99234226 -182959438 - MER58B DNA MER1_type 0 341 176 1202 189 26 99 chr1 99234236 99234284 -182959380 - MLT2B3 LTR ERVL -2 552 502 580 62 0 37 chr1 99234284 99234365 -182959299 + MADE1 DNA Mariner 1 78 -2 1202 189 26 99 chr1 99234365 99234618 -182959046 - MLT2B3 LTR ERVL -52 502 273 * 2111 196 33 2 chr1 99234615 99235012 -182958652 - MLT2B1 LTR ERVL -109 411 3 21 82 0 0 chr1 99236198 99236247 -182957417 + AT_rich Low_complexity Low_complexity 1 49 0 1277 253 208 25 chr1 99236325 99236854 -182956810 + MLT1E2 LTR MaLR 1 626 0 1209 276 115 30 chr1 99236929 99237805 -182955859 - HAL1b LINE L1 -229 1119 169 230 313 0 24 chr1 99239352 99239435 -182954229 - Tigger3(Golem) DNA MER2_type -1954 1075 995 2167 124 0 3 chr1 99240212 99240519 -182953145 + AluSx SINE Alu 5 310 -2 25 0 0 0 chr1 99244328 99244353 -182949311 + AT_rich Low_complexity Low_complexity 1 25 0 879 237 123 14 chr1 99244390 99244609 -182949055 - MIR SINE MIR 0 262 20 526 270 81 73 chr1 99245155 99245662 -182948002 - MLT1J LTR MaLR 0 511 1 482 280 21 32 chr1 99245761 99245950 -182947714 - MLT1K LTR MaLR -7 581 395 356 301 16 0 chr1 99246345 99246468 -182947196 - MER103 DNA DNA -24 142 18 325 198 99 25 chr1 99247192 99247273 -182946391 - MIR SINE MIR 0 262 176 333 0 0 0 chr1 99249208 99249245 -182944419 + (TG)n Simple_repeat Simple_repeat 2 38 0 459 279 20 34 chr1 99249463 99249610 -182944054 - MIR SINE MIR -72 190 46 4724 209 10 10 chr1 99250135 99251046 -182942618 - ERVL LTR ERVL -3557 2207 1297 1886 154 13 17 chr1 99252111 99252456 -182941208 - Charlie3 DNA MER1_type 0 2712 1 253 317 49 12 chr1 99252456 99252538 -182941126 + L2 LINE L2 3148 3232 -40 602 285 6 6 chr1 99253328 99253486 -182940178 - L1ME LINE L1 -578 5588 5431 358 319 62 37 chr1 99253491 99253764 -182939900 - L1ME LINE L1 -747 5399 5120 2427 183 7 76 chr1 99253916 99254469 -182939195 - MLT2B2 LTR ERVL 0 515 1 504 236 115 6 chr1 99254745 99254902 -182938762 - L2 LINE L2 -4 3309 3136 402 69 0 0 chr1 99255453 99255511 -182938153 + (CA)n Simple_repeat Simple_repeat 1 58 0 5936 143 20 9 chr1 99255891 99257723 -182935941 + L1PB3 LINE L1 4300 6152 -2 977 257 196 66 chr1 99257731 99257937 -182935727 - L2 LINE L2 -297 3016 2838 757 168 6 35 chr1 99257937 99258110 -182935554 - L1MA3 LINE L1 0 6305 6138 977 257 196 66 chr1 99258110 99258548 -182935116 - L2 LINE L2 -475 2838 2227 605 318 10 7 chr1 99258574 99258863 -182934801 - L1ME LINE L1 -2277 3869 3580 579 303 172 20 chr1 99258870 99259114 -182934550 - L2 LINE L2 -508 2806 2526 2348 108 0 0 chr1 99259168 99259474 -182934190 + AluSg SINE Alu 3 308 -2 21 0 0 0 chr1 99259726 99259747 -182933917 + AT_rich Low_complexity Low_complexity 1 21 0 380 291 0 0 chr1 99259779 99259882 -182933782 - MER70B LTR ERVL -18 560 458 256 304 152 54 chr1 99261378 99261550 -182932114 + MIR SINE MIR 3 192 -58 2366 93 3 0 chr1 99262274 99262586 -182931078 - AluSp SINE Alu 0 313 1 1762 251 51 21 chr1 99262586 99263115 -182930549 - MLT-int LTR MaLR -1189 546 2 2403 141 69 19 chr1 99263117 99263537 -182930127 - MSTB2 LTR MaLR 0 457 17 259 295 0 16 chr1 99263581 99263642 -182930022 - MER91B DNA MER1_type -127 63 4 2111 124 3 3 chr1 99263992 99264291 -182929373 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 99264405 99264426 -182929238 + AT_rich Low_complexity Low_complexity 1 21 0 5865 149 16 10 chr1 99264463 99265753 -182927911 + L1PB1 LINE L1 4464 5769 -382 252 0 0 0 chr1 99265753 99265781 -182927883 + (TG)n Simple_repeat Simple_repeat 2 29 0 5865 149 16 10 chr1 99265781 99266166 -182927498 + L1PB1 LINE L1 5769 6150 -1 2385 66 0 10 chr1 99267330 99267634 -182926030 + AluY SINE Alu 1 301 -10 4523 114 18 22 chr1 99267814 99267995 -182925669 + pTR5 LTR ERV1 848 1028 -1410 198 0 0 0 chr1 99267995 99268017 -182925647 + (CCCGG)n Simple_repeat Simple_repeat 3 24 0 4523 114 18 22 chr1 99268017 99268960 -182924704 + pTR5 LTR ERV1 1028 2115 -323 627 197 8 12 chr1 99269060 99269304 -182924360 + CT-rich Low_complexity Low_complexity 1 243 0 1860 233 34 89 chr1 99269315 99270270 -182923394 - L1MC5 LINE L1 -523 7438 6536 769 89 0 9 chr1 99270289 99270401 -182923263 - L1MA1 LINE L1 0 6302 6192 3588 172 9 1 chr1 99270513 99271170 -182922494 - MLT1A1-int LTR MaLR -1073 662 1 1805 191 43 3 chr1 99271170 99271194 -182922470 - MLT1A1 LTR MaLR 0 365 343 198 0 0 0 chr1 99271194 99271216 -182922448 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1805 191 43 3 chr1 99271216 99271542 -182922122 - MLT1A1 LTR MaLR -22 343 1 21 36 0 0 chr1 99271543 99271571 -182922093 + AT_rich Low_complexity Low_complexity 1 28 0 334 309 95 6 chr1 99271703 99271871 -182921793 - MLT1J1 LTR MaLR -248 198 16 553 275 5 78 chr1 99272584 99272777 -182920887 + MIR3 SINE MIR 30 208 0 25 0 0 0 chr1 99274227 99274252 -182919412 + AT_rich Low_complexity Low_complexity 1 25 0 9100 148 24 3 chr1 99274615 99276963 -182916701 - L1MA1 LINE L1 -413 5889 3491 517 81 57 8 chr1 99279455 99279579 -182914085 + (TG)n Simple_repeat Simple_repeat 1 130 0 198 0 0 0 chr1 99280932 99280954 -182912710 + (A)n Simple_repeat Simple_repeat 1 22 0 2548 129 13 37 chr1 99280975 99281018 -182912646 + MER65A LTR ERV1 1 44 -401 198 0 0 0 chr1 99281018 99281040 -182912624 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2548 129 13 37 chr1 99281040 99281452 -182912212 + MER65A LTR ERV1 44 445 0 328 140 0 0 chr1 99283711 99283768 -182909896 + pTR5 LTR ERV1 741 797 -1641 265 29 0 0 chr1 99283868 99283902 -182909762 + pTR5 LTR ERV1 2405 2438 0 253 266 170 11 chr1 99283919 99284013 -182909651 - L2 LINE L2 -5 3308 3200 497 298 96 58 chr1 99284738 99285188 -182908476 - MLT1J LTR MaLR -30 481 15 1485 97 5 5 chr1 99285820 99286027 -182907637 - AluSq SINE Alu -13 300 94 954 285 12 0 chr1 99287570 99287823 -182905841 - MIR SINE MIR -1 261 6 402 377 0 0 chr1 99287958 99288080 -182905584 + L2 LINE L2 3142 3263 -9 277 342 8 42 chr1 99288138 99288258 -182905406 + MIR SINE MIR 20 135 -127 18977 164 35 21 chr1 99289253 99293966 -182899698 - L1 LINE L1 -2765 4800 16 21 0 0 0 chr1 99294143 99294164 -182899500 + AT_rich Low_complexity Low_complexity 1 21 0 387 179 128 0 chr1 99294416 99294494 -182899170 - L2 LINE L2 -1 3312 3225 2678 157 2 20 chr1 99294670 99295161 -182898503 - L1MB3 LINE L1 -96 6323 5842 1235 114 5 19 chr1 99295161 99295371 -182898293 - L1MA4A LINE L1 0 7722 7516 5434 156 22 30 chr1 99295381 99295755 -182897909 - L1MA4A LINE L1 -321 7401 7026 2477 85 0 0 chr1 99295755 99296061 -182897603 - AluSq SINE Alu -7 306 1 5434 156 22 30 chr1 99296061 99296229 -182897435 - L1MA4A LINE L1 -696 7026 6858 1699 201 0 0 chr1 99296229 99296518 -182897146 - AluJo SINE Alu -23 289 1 5434 156 22 30 chr1 99296518 99297639 -182896025 - L1MA4A LINE L1 -864 6858 5628 * 14558 173 37 6 chr1 99297637 99300361 -182893303 - L1MA4A LINE L1 -4738 2827 19 10060 219 59 31 chr1 99300368 99302896 -182890768 - L1M2 LINE L1 -4246 2603 5 3097 211 26 15 chr1 99302898 99303935 -182889729 - L1MB3 LINE L1 -575 5844 4793 2545 142 16 14 chr1 99303935 99304283 -182889381 - MSTA LTR MaLR -4 424 73 1751 155 67 28 chr1 99304283 99304644 -182889020 + THE1C LTR MaLR 1 375 0 2545 142 16 14 chr1 99304644 99304718 -182888946 - MSTA LTR MaLR -355 73 1 2239 161 0 5 chr1 99304718 99305109 -182888555 - MSTA-int LTR MaLR 0 1651 1263 411 105 0 0 chr1 99305115 99305172 -182888492 - MER61C LTR ERV1 -377 57 1 4537 203 31 71 chr1 99305172 99305576 -182888088 - L1MB3 LINE L1 -1582 4800 4381 3596 104 7 7 chr1 99305576 99306116 -182887548 - L1MA1 LINE L1 0 6302 5763 4537 203 31 71 chr1 99306116 99307312 -182886352 - L1MB3 LINE L1 -2001 4381 3264 285 175 0 135 chr1 99307315 99307448 -182886216 - L1PB4 LINE L1 0 6166 6055 561 217 0 0 chr1 99307448 99307609 -182886055 - L1MB3 LINE L1 -3105 3277 3117 4572 134 26 7 chr1 99307709 99308478 -182885186 + Tigger1 DNA MER2_type 892 1675 -743 354 287 90 8 chr1 99308937 99309059 -182884605 - MIR SINE MIR -49 213 82 2784 177 39 18 chr1 99309166 99309984 -182883680 - L1MB3 LINE L1 -3625 2757 1923 1743 203 0 3 chr1 99309984 99310280 -182883384 - AluJb SINE Alu -17 295 1 2784 177 39 18 chr1 99310280 99310301 -182883363 - L1MB3 LINE L1 -4459 1923 1904 2347 154 25 7 chr1 99310415 99310851 -182882813 - L1MB3 LINE L1 -4486 1898 1455 4612 156 47 0 chr1 99310852 99311660 -182882004 + Tigger1 DNA MER2_type 1 846 -1572 203 213 21 0 chr1 99312155 99312202 -182881462 + T-rich Low_complexity Low_complexity 3 50 0 396 0 0 0 chr1 99312391 99312435 -182881229 + (TG)n Simple_repeat Simple_repeat 1 44 0 295 338 62 100 chr1 99312983 99313303 -182880361 - L2 LINE L2 -2 3270 2963 23 33 0 0 chr1 99313623 99313653 -182880011 + AT_rich Low_complexity Low_complexity 1 30 0 1635 252 41 37 chr1 99315393 99315729 -182877935 - MLT1F LTR MaLR 0 542 202 1464 108 35 39 chr1 99315729 99315960 -182877704 - MER30 DNA MER1_type 0 230 1 1635 252 41 37 chr1 99315960 99316138 -182877526 - MLT1F LTR MaLR -340 202 26 3398 143 15 0 chr1 99316243 99316762 -182876902 + MER1A DNA MER1_type 1 527 0 441 310 11 27 chr1 99317148 99317332 -182876332 + MLT1F LTR MaLR 362 542 0 276 263 80 22 chr1 99317333 99317470 -182876194 + MLT1A1-int LTR MaLR 2 146 -1225 420 287 27 13 chr1 99317523 99317673 -182875991 + MLT1A1-int LTR MaLR 401 552 -819 189 0 0 0 chr1 99318094 99318115 -182875549 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2085 124 0 10 chr1 99318120 99318410 -182875254 - AluSx SINE Alu -25 287 1 420 313 76 40 chr1 99319230 99319428 -182874236 - MIR SINE MIR -12 250 46 607 118 0 0 chr1 99319847 99319932 -182873732 + AluS SINE Alu 1 85 -228 23 0 0 0 chr1 99320029 99320052 -182873612 + AT_rich Low_complexity Low_complexity 1 23 0 503 307 8 36 chr1 99320892 99321057 -182872607 + MIR SINE MIR 53 213 -49 181 330 28 28 chr1 99323443 99323552 -182870112 + MIR SINE MIR 27 135 -73 356 181 75 43 chr1 99323581 99323675 -182869989 + MER106B DNA MER1_type 940 1036 -23 3405 220 83 87 chr1 99323781 99323837 -182869827 + MLT1A1-int LTR MaLR 671 726 -1009 1964 195 26 15 chr1 99323837 99324226 -182869438 - MSTD LTR MaLR 0 396 4 3405 220 83 87 chr1 99324226 99325238 -182868426 + MLT1A1-int LTR MaLR 726 1735 0 1554 210 86 6 chr1 99325238 99325576 -182868088 + MLT1A1 LTR MaLR 1 365 0 294 29 0 0 chr1 99325637 99325672 -182867992 + (CA)n Simple_repeat Simple_repeat 2 36 0 959 173 110 16 chr1 99325712 99325903 -182867761 - MER3 DNA MER1_type 0 209 1 273 163 0 0 chr1 99326801 99326865 -182866799 + AluSp/q SINE Alu 245 308 0 1699 242 29 7 chr1 99326980 99327427 -182866237 + Charlie4a DNA MER1_type 2 458 -50 1550 205 19 32 chr1 99327474 99327845 -182865819 + MLT1A2 LTR MaLR 1 366 -8 552 30 0 0 chr1 99327867 99327933 -182865731 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 1865 154 3 3 chr1 99327935 99328233 -182865431 - 7SLRNA srpRNA srpRNA 0 320 23 423 274 178 33 chr1 99329985 99330255 -182863409 + L2 LINE L2 3003 3311 -2 2125 151 25 6 chr1 99330256 99330614 -182863050 - MLT1A1 LTR MaLR 0 365 1 1412 171 0 8 chr1 99330825 99331064 -182862600 + AluJb SINE Alu 45 281 -31 243 0 0 0 chr1 99331086 99331113 -182862551 + (TTA)n Simple_repeat Simple_repeat 3 29 0 2407 137 13 5 chr1 99331298 99331685 -182861979 + MLT1B LTR MaLR 1 390 0 365 279 146 13 chr1 99331781 99331939 -182861725 - L3b LINE CR1 -125 1458 1280 297 295 124 7 chr1 99332397 99332613 -182861051 + L2 LINE L2 2765 3013 -300 2449 238 82 41 chr1 99332785 99333852 -182859812 + L2 LINE L2 2138 3228 -85 203 324 18 36 chr1 99335073 99335184 -182858480 + GA-rich Low_complexity Low_complexity 5 113 0 503 278 28 0 chr1 99336940 99337084 -182856580 - MIR SINE MIR 0 262 115 198 0 0 0 chr1 99337092 99337114 -182856550 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2774 229 80 47 chr1 99341192 99342519 -182851145 + L1MDa LINE L1 21 1688 -4852 2021 153 32 3 chr1 99342755 99343323 -182850341 + L1M4 LINE L1 4980 5563 -621 606 217 10 10 chr1 99343384 99343559 -182850105 + L1MB8 LINE L1 5519 5698 -476 722 181 60 6 chr1 99343567 99343733 -182849931 + L1MB8 LINE L1 5995 6169 -9 241 254 17 17 chr1 99345270 99345329 -182848335 - L2 LINE L2 -19 3294 3236 27 0 0 0 chr1 99345438 99345465 -182848199 + AT_rich Low_complexity Low_complexity 1 27 0 296 203 49 63 chr1 99345472 99345615 -182848049 - L1ME4a LINE L1 -15 6106 5966 769 254 100 19 chr1 99345677 99345988 -182847676 - L1ME4a LINE L1 -301 5820 5485 433 258 33 33 chr1 99346122 99346242 -182847422 - L2 LINE L2 -6 3307 3188 2123 107 4 0 chr1 99346581 99346862 -182846802 + AluSc SINE Alu 1 282 -27 423 0 0 0 chr1 99346862 99346909 -182846755 + (CA)n Simple_repeat Simple_repeat 2 48 0 4431 251 56 20 chr1 99347062 99348589 -182845075 - L1ME4a LINE L1 -1492 4654 3073 229 218 82 64 chr1 99349068 99349178 -182844486 - L1ME3 LINE L1 -88 6074 5963 600 141 51 13 chr1 99349322 99349478 -182844186 + CT-rich Low_complexity Low_complexity 2 163 0 509 138 11 0 chr1 99349508 99349602 -182844062 + CT-rich Low_complexity Low_complexity 3 97 0 2344 67 3 55 chr1 99349842 99350170 -182843494 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr1 99351145 99351165 -182842499 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 495 250 131 6 chr1 99351633 99351793 -182841871 - MLT1J LTR MaLR -2 509 330 280 299 39 8 chr1 99351856 99351983 -182841681 + HAL1 LINE L1 2375 2505 -2 612 268 102 56 chr1 99352032 99352316 -182841348 + L2 LINE L2 3016 3312 -1 257 271 53 30 chr1 99352541 99352626 -182841038 - MER103 DNA DNA -2 164 73 2081 95 3 43 chr1 99352626 99352930 -182840734 - AluSx SINE Alu -20 292 1 257 271 53 30 chr1 99352930 99352977 -182840687 - MER103 DNA DNA -93 73 29 360 175 0 12 chr1 99354247 99354327 -182839337 - MER116 DNA Mariner -1 79 1 1774 252 81 16 chr1 99355193 99355752 -182837912 + MLT1G1 LTR MaLR 1 595 0 202 328 57 8 chr1 99355826 99355948 -182837716 - L3b LINE CR1 -342 1241 1114 267 31 0 0 chr1 99356381 99356413 -182837251 + (CA)n Simple_repeat Simple_repeat 2 33 0 909 271 94 37 chr1 99356502 99357340 -182836324 - L1ME3 LINE L1 -366 5804 4830 2202 101 7 0 chr1 99357340 99357637 -182836027 - AluSx SINE Alu -13 299 1 909 271 94 37 chr1 99357637 99358035 -182835629 - L1ME3 LINE L1 -1340 4830 4456 578 209 0 0 chr1 99358045 99358150 -182835514 - MER82 DNA MER2_type 0 653 549 229 277 0 0 chr1 99361198 99361245 -182832419 - MIR SINE MIR -12 250 204 218 208 21 0 chr1 99361301 99361349 -182832315 + GA-rich Low_complexity Low_complexity 1 49 0 572 178 0 34 chr1 99362157 99362275 -182831389 - AluJb SINE Alu 0 312 199 357 303 55 67 chr1 99362650 99363086 -182830578 + L1ME LINE L1 3879 4309 -1837 546 203 5 137 chr1 99363102 99363270 -182830394 - MIR SINE MIR -17 245 109 1919 195 76 11 chr1 99363270 99363705 -182829959 + MLT1C LTR MaLR 1 463 -4 546 203 5 137 chr1 99363705 99363748 -182829916 - MIR SINE MIR -153 109 62 930 279 92 37 chr1 99363748 99363891 -182829773 + L1ME LINE L1 4297 4431 -1739 3321 206 9 8 chr1 99363891 99364543 -182829121 + MER82 DNA MER2_type 1 653 0 930 279 92 37 chr1 99364543 99364951 -182828713 + L1ME LINE L1 4431 4815 -1355 2179 104 7 0 chr1 99364951 99365248 -182828416 + AluSx SINE Alu 1 299 -13 930 279 92 37 chr1 99365248 99366086 -182827578 + L1ME LINE L1 4815 5804 -366 357 24 0 0 chr1 99366175 99366217 -182827447 + (TG)n Simple_repeat Simple_repeat 2 43 0 202 328 57 8 chr1 99366650 99366772 -182826892 + L3b LINE CR1 1114 1241 -342 1753 254 81 16 chr1 99366846 99367405 -182826259 - MLT1G1 LTR MaLR 0 595 1 360 175 0 12 chr1 99368271 99368351 -182825313 + MER116 DNA Mariner 1 79 -1 2095 96 3 40 chr1 99369667 99369970 -182823694 + AluSx SINE Alu 1 292 -20 596 254 99 53 chr1 99370280 99370564 -182823100 - L2 LINE L2 -1 3312 3016 246 299 39 8 chr1 99370613 99370740 -182822924 - HAL1 LINE L1 -2 2505 2375 443 250 131 6 chr1 99370803 99370963 -182822701 + MLT1J LTR MaLR 330 509 -2 180 0 0 0 chr1 99371431 99371451 -182822213 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2365 67 3 55 chr1 99372414 99372743 -182820921 - AluSx SINE Alu 0 312 1 381 276 153 63 chr1 99372751 99373182 -182820482 - HAL1 LINE L1 -810 1697 1228 21 0 0 0 chr1 99373302 99373323 -182820341 + AT_rich Low_complexity Low_complexity 1 21 0 2360 115 36 8 chr1 99373974 99374339 -182819325 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr1 99374482 99374507 -182819157 + AT_rich Low_complexity Low_complexity 1 25 0 326 240 41 103 chr1 99374711 99374857 -182818807 - L2 LINE L2 -216 3056 2920 357 234 65 103 chr1 99375861 99376045 -182817619 - MER69A DNA AcHobo 0 177 1 22 35 0 0 chr1 99377670 99377699 -182815965 + AT_rich Low_complexity Low_complexity 1 29 0 256 329 0 24 chr1 99377906 99377991 -182815673 + MIR3 SINE MIR 5 87 -121 401 325 162 31 chr1 99378003 99378385 -182815279 - L2 LINE L2 -1 3312 2881 186 179 30 90 chr1 99378467 99378534 -182815130 + L2 LINE L2 3251 3313 0 2191 128 0 0 chr1 99378618 99378923 -182814741 + AluSx SINE Alu 1 305 -7 3142 155 39 21 chr1 99379766 99380432 -182813232 + L1MC3 LINE L1 6936 7613 -172 985 229 26 4 chr1 99380806 99381033 -182812631 - MIR SINE MIR 0 262 31 855 246 25 8 chr1 99381218 99381462 -182812202 - LTR16A LTR ERVL 0 450 203 288 170 19 0 chr1 99384181 99384234 -182809430 - Tigger5 DNA MER2_type -2269 54 1 1865 144 17 27 chr1 99386115 99386413 -182807251 - AluJb SINE Alu -17 295 1 233 29 29 0 chr1 99386552 99386586 -182807078 + (TG)n Simple_repeat Simple_repeat 1 35 0 306 350 83 0 chr1 99386939 99387059 -182806605 + MIR SINE MIR 69 198 -64 1796 160 0 0 chr1 99388104 99388386 -182805278 + AluSx SINE Alu 14 295 -17 285 264 232 24 chr1 99388498 99388623 -182805041 - L2 LINE L2 0 3272 3122 377 101 159 0 chr1 99388640 99388709 -182804955 + MADE1 DNA Mariner 1 80 0 2131 121 0 0 chr1 99389057 99389372 -182804292 - AluY SINE Alu 0 311 1 1011 112 0 8 chr1 99389373 99389507 -182804157 - AluSg1 SINE Alu -176 133 1 788 184 149 0 chr1 99391041 99391209 -182802455 + MER58A DNA MER1_type 28 220 -4 279 224 35 17 chr1 99392386 99392444 -182801220 + MER5B DNA MER1_type 120 178 0 1664 174 39 13 chr1 99392622 99392933 -182800731 - MER7A DNA MER2_type 0 346 30 1429 184 51 60 chr1 99392935 99393370 -182800294 - MLT1C LTR MaLR -31 436 6 6476 52 1 1 chr1 99393681 99394961 -182798703 + L1PA8A LINE L1 4557 5836 -295 1779 145 41 62 chr1 99395063 99395450 -182798214 - MSTB LTR MaLR -47 379 1 1525 221 13 20 chr1 99395823 99396216 -182797448 + MER74A LTR ERVL 1 390 -168 7188 99 11 5 chr1 99396512 99397557 -182796107 - HSMAR1 DNA Mariner -236 1051 1 21 0 0 0 chr1 99397574 99397595 -182796069 + AT_rich Low_complexity Low_complexity 1 21 0 460 246 24 8 chr1 99398990 99399116 -182794548 + MER46C DNA MER2_type 208 335 -3 231 130 0 22 chr1 99399225 99399271 -182794393 + MLT1F1 LTR MaLR 6 50 -517 180 309 34 57 chr1 99401265 99401440 -182792224 - L3 LINE CR1 -73 1504 1334 1635 173 29 4 chr1 99401440 99401738 -182791926 - AluSx SINE Alu 0 305 1 2309 110 7 0 chr1 99402273 99402581 -182791083 + AluSg SINE Alu 1 310 0 244 341 61 23 chr1 99402733 99402865 -182790799 + MER5B DNA MER1_type 4 140 -38 186 273 164 0 chr1 99403802 99403912 -182789752 - L2 LINE L2 0 3272 3145 192 239 164 0 chr1 99404683 99404750 -182788914 - MIR SINE MIR -10 252 175 468 322 75 17 chr1 99404967 99405141 -182788523 - MIR SINE MIR -71 191 8 21 0 0 0 chr1 99405814 99405835 -182787829 + AT_rich Low_complexity Low_complexity 1 21 0 2345 139 43 0 chr1 99406552 99406926 -182786738 - MLT1B LTR MaLR 0 390 1 1022 144 23 0 chr1 99408955 99409129 -182784535 - MER5B DNA MER1_type 0 178 1 209 284 69 69 chr1 99409260 99409362 -182784302 - L3 LINE CR1 -2 1575 1474 21 0 0 0 chr1 99410277 99410298 -182783366 + AT_rich Low_complexity Low_complexity 1 21 0 846 169 51 7 chr1 99410679 99411054 -182782610 + GA-rich Low_complexity Low_complexity 1 391 0 26 50 0 0 chr1 99411312 99411352 -182782312 + AT_rich Low_complexity Low_complexity 1 40 0 2155 143 3 0 chr1 99412048 99412348 -182781316 + AluSg SINE Alu 1 301 -9 315 283 7 41 chr1 99412923 99413068 -182780596 + A-rich Low_complexity Low_complexity 2 141 0 1751 184 0 10 chr1 99414341 99414634 -182779030 - AluJo SINE Alu -22 290 1 189 74 0 0 chr1 99414863 99414890 -182778774 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 369 325 118 6 chr1 99414976 99415145 -182778519 + MIR3 SINE MIR 16 203 -5 2872 262 136 22 chr1 99415365 99416744 -182776920 + L2 LINE L2 1796 3313 0 401 202 56 0 chr1 99417088 99417177 -182776487 - MIR SINE MIR 0 262 169 313 214 12 0 chr1 99417951 99418035 -182775629 + L1ME LINE L1 5738 5822 -340 229 327 29 10 chr1 99418605 99418709 -182774955 - L2 LINE L2 -223 3049 2944 252 383 81 14 chr1 99418739 99418948 -182774716 + MIR SINE MIR 21 243 -19 253 204 0 41 chr1 99418976 99419025 -182774639 - MIR SINE MIR -141 67 21 563 296 214 17 chr1 99421384 99421735 -182771929 + L3 LINE CR1 449 868 -709 316 285 31 31 chr1 99421823 99421953 -182771711 + MIR SINE MIR 104 233 -29 299 294 118 10 chr1 99422088 99422190 -182771474 - L2 LINE L2 -10 3262 3150 214 326 11 34 chr1 99422270 99422359 -182771305 + L2 LINE L2 3186 3272 0 * 305 253 59 65 chr1 99422345 99422515 -182771149 + L3 LINE CR1 1188 1356 -221 480 137 42 0 chr1 99426668 99426763 -182766901 + L1MB4 LINE L1 6080 6178 -2 876 270 186 24 chr1 99427011 99427507 -182766157 - MLT1K LTR MaLR -12 576 1 4748 186 71 12 chr1 99427535 99428517 -182765147 - MER45B DNA AcHobo 0 1040 1 263 70 0 23 chr1 99428660 99428703 -182764961 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 818 258 161 15 chr1 99428765 99429151 -182764513 - L1MC/D LINE L1 -299 5822 5380 411 239 154 64 chr1 99429292 99429526 -182764138 - MIR SINE MIR 0 262 8 423 0 0 0 chr1 99432323 99432370 -182761294 + (TG)n Simple_repeat Simple_repeat 2 48 0 238 348 68 51 chr1 99433482 99433718 -182759946 - MIR SINE MIR 0 262 23 2119 159 74 17 chr1 99434550 99434953 -182758711 - MSTB LTR MaLR 0 426 1 366 354 0 9 chr1 99435104 99435217 -182758447 + L2 LINE L2 3160 3271 -1 2437 206 75 20 chr1 99435748 99436291 -182757373 + MLT1E2 LTR MaLR 52 624 -2 21 0 0 0 chr1 99436323 99436344 -182757320 + AT_rich Low_complexity Low_complexity 1 21 0 186 382 67 0 chr1 99436515 99436604 -182757060 - L2 LINE L2 -2 3270 3176 818 339 61 40 chr1 99436726 99437423 -182756241 + L2 LINE L2 2496 3211 -61 2167 102 38 0 chr1 99438345 99438638 -182755026 + AluSq SINE Alu 1 304 -9 180 333 79 34 chr1 99438702 99438879 -182754785 - L2 LINE L2 -1897 1417 1233 192 125 0 0 chr1 99440165 99440197 -182753467 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 257 242 0 0 chr1 99440614 99440680 -182752984 - MER117 DNA MER1_type -103 94 29 195 419 122 7 chr1 99443471 99443619 -182750045 + L2 LINE L2 3076 3240 -32 293 333 21 10 chr1 99443626 99443722 -182749942 - L2 LINE L2 -35 3237 3141 361 246 0 0 chr1 99443928 99443997 -182749667 - L2 LINE L2 -3 3269 3201 1430 284 58 5 chr1 99444104 99444534 -182749130 - LTR33 LTR ERVL 0 521 69 402 318 85 23 chr1 99444661 99444837 -182748827 + MIR3 SINE MIR 15 201 -7 262 114 0 0 chr1 99446712 99446756 -182746908 - L1PA5 LINE L1 -1 6153 6110 393 324 80 80 chr1 99447171 99447421 -182746243 + MIR SINE MIR 2 251 -11 567 327 31 13 chr1 99448500 99448726 -182744938 - MIR SINE MIR -14 248 19 23 0 0 0 chr1 99450070 99450093 -182743571 + AT_rich Low_complexity Low_complexity 1 23 0 825 327 128 36 chr1 99451099 99451422 -182742242 + L2 LINE L2 1293 1585 -1729 246 32 0 0 chr1 99451422 99451453 -182742211 + (TC)n Simple_repeat Simple_repeat 1 31 0 825 327 128 36 chr1 99451453 99452564 -182741100 + L2 LINE L2 1585 2859 -455 256 195 0 0 chr1 99453422 99453463 -182740201 - 5S rRNA rRNA -79 42 2 245 301 184 20 chr1 99453501 99453697 -182739967 - MIR SINE MIR -1 261 34 448 194 53 84 chr1 99455390 99455472 -182738192 + L1ME3 LINE L1 6003 6086 -84 1989 133 29 50 chr1 99455472 99455855 -182737809 - THE1C LTR MaLR 0 375 1 448 194 53 84 chr1 99455855 99455961 -182737703 + L1ME3 LINE L1 6086 6170 0 483 322 38 27 chr1 99456996 99457179 -182736485 - MIR3 SINE MIR -7 201 17 2174 54 32 14 chr1 99457708 99458038 -182735626 - AluY SINE Alu 0 335 1 416 286 117 31 chr1 99459600 99459796 -182733868 - MIR SINE MIR -2 260 48 2100 92 12 67 chr1 99460513 99460840 -182732824 + AluSx SINE Alu 2 310 -2 514 296 79 30 chr1 99460976 99461179 -182732485 + MIR SINE MIR 20 232 -30 1520 164 39 52 chr1 99461686 99461991 -182731673 + AluJo SINE Alu 1 301 -11 217 306 62 76 chr1 99462701 99462845 -182730819 + L2 LINE L2 3116 3257 -15 22 0 0 0 chr1 99463790 99463812 -182729852 + AT_rich Low_complexity Low_complexity 1 22 0 182 361 28 49 chr1 99464118 99464262 -182729402 + L3b LINE CR1 1275 1415 -168 469 348 89 56 chr1 99464386 99464688 -182728976 + L2 LINE L2 2933 3244 -28 433 342 111 44 chr1 99464786 99465532 -182728132 + L2 LINE L2 2136 2931 -383 1697 227 26 0 chr1 99465649 99466068 -182727596 + Charlie4a DNA MER1_type 14 443 -65 2449 70 0 3 chr1 99466386 99466688 -182726976 - AluY SINE Alu -8 303 3 291 238 24 24 chr1 99466929 99467055 -182726609 + (TA)n Simple_repeat Simple_repeat 2 127 0 420 303 35 77 chr1 99467783 99468047 -182725617 - MIR SINE MIR 0 262 3 305 271 0 43 chr1 99468475 99468615 -182725049 + LTR16A LTR ERVL 136 269 -181 1050 309 74 9 chr1 99468666 99469096 -182724568 + HERV16 LTR ERVL 15 472 -4524 2754 290 79 6 chr1 99469177 99471122 -182722542 + HERV16 LTR ERVL 580 2802 -2194 978 338 10 49 chr1 99471553 99471996 -182721668 + HERV16 LTR ERVL 2812 3271 -2383 2386 99 0 0 chr1 99471996 99472300 -182721364 + AluSg SINE Alu 3 306 -4 1989 99 18 11 chr1 99472303 99472575 -182721089 + AluSc SINE Alu 29 302 -7 978 338 10 49 chr1 99472575 99472743 -182720921 + HERV16 LTR ERVL 3273 3403 -2251 1213 261 81 24 chr1 99472904 99473314 -182720350 + LTR16A LTR ERVL 18 450 0 1023 195 0 0 chr1 99473368 99473532 -182720132 - FAM SINE Alu -10 165 2 526 359 46 78 chr1 99473990 99474538 -182719126 - L2 LINE L2 0 3272 2728 13481 162 38 45 chr1 99474632 99476881 -182716783 + L1MA2 LINE L1 9 2272 -5452 2099 141 0 3 chr1 99476881 99477187 -182716477 + AluSx SINE Alu 1 305 -7 13481 162 38 45 chr1 99477187 99478234 -182715430 + L1MA2 LINE L1 2272 3325 -4399 19212 111 0 0 chr1 99478234 99482065 -182711599 + L1PA8 LINE L1 2287 6164 -8 13481 162 38 45 chr1 99482065 99482584 -182711080 + L1MA2 LINE L1 3325 3846 -3878 2435 75 3 0 chr1 99482584 99482892 -182710772 - AluY SINE Alu -2 309 1 13481 162 38 45 chr1 99482892 99483201 -182710463 + L1MA2 LINE L1 3846 4156 -3568 1656 195 10 13 chr1 99483201 99483508 -182710156 + AluJb SINE Alu 6 311 -1 13481 162 38 45 chr1 99483508 99483891 -182709773 + L1MA2 LINE L1 4156 4540 -3184 1689 188 45 0 chr1 99483891 99484179 -182709485 + AluJb SINE Alu 1 301 -11 13481 162 38 45 chr1 99484179 99485767 -182707897 + L1MA2 LINE L1 4540 6463 -1261 2246 111 3 13 chr1 99485767 99486082 -182707582 + AluSx SINE Alu 1 312 0 13481 162 38 45 chr1 99486082 99486920 -182706744 + L1MA2 LINE L1 6463 7305 -419 1724 109 25 0 chr1 99486924 99487200 -182706464 + L1MA2 LINE L1 7441 7723 0 663 288 21 41 chr1 99487791 99488034 -182705630 - MIR SINE MIR 0 262 25 338 281 224 26 chr1 99488343 99488535 -182705129 - MIR SINE MIR -18 244 15 2790 92 18 8 chr1 99489116 99489509 -182704155 + MLT2A2 LTR ERVL 2 398 -55 275 0 0 28 chr1 99489509 99489545 -182704119 + (TA)n Simple_repeat Simple_repeat 2 36 0 363 97 0 9 chr1 99489641 99489702 -182703962 + MLT2A2 LTR ERVL 401 453 0 41859 67 16 7 chr1 99489702 99490888 -182702776 + HERVL-A2-A2 LTR ERVL 1 1174 -4480 2323 85 0 0 chr1 99490888 99491183 -182702481 + AluY SINE Alu 1 295 -16 41859 67 16 7 chr1 99491183 99495598 -182698066 + HERVL-A2-A2 LTR ERVL 1174 5654 0 2720 92 35 8 chr1 99495598 99496000 -182697664 + MLT2A2 LTR ERVL 1 413 -40 530 274 6 0 chr1 99496005 99496184 -182697480 + (TA)n Simple_repeat Simple_repeat 1 180 0 232 113 57 19 chr1 99496184 99496205 -182697459 + MLT2A2 LTR ERVL 390 409 -35 414 0 0 0 chr1 99496205 99496251 -182697413 + (GA)n Simple_repeat Simple_repeat 2 47 0 232 113 57 19 chr1 99496251 99496282 -182697382 + MLT2A2 LTR ERVL 409 444 0 266 211 0 19 chr1 99496294 99496346 -182697318 + L2 LINE L2 3204 3254 -18 2095 100 6 44 chr1 99497187 99497506 -182696158 + AluSx SINE Alu 1 307 -5 1086 185 51 5 chr1 99497536 99497752 -182695912 + AluJb SINE Alu 86 311 -1 296 360 0 0 chr1 99499100 99499189 -182694475 - MIR SINE MIR -71 137 49 1868 150 3 36 chr1 99499557 99499863 -182693801 - AluSx SINE Alu -16 296 1 2110 230 52 18 chr1 99500038 99500637 -182693027 + L1MC4a LINE L1 7190 7808 0 470 267 119 53 chr1 99500734 99501456 -182692208 + L1ME4a LINE L1 5334 6103 -18 180 239 87 0 chr1 99501768 99501814 -182691850 + L2 LINE L2 3262 3311 -2 1917 167 0 7 chr1 99501832 99502138 -182691526 + AluJb SINE Alu 1 304 -8 483 351 32 7 chr1 99502875 99503029 -182690635 + L2 LINE L2 3115 3272 0 185 349 160 0 chr1 99503288 99503394 -182690270 - L2 LINE L2 -2 3270 3148 1822 162 0 0 chr1 99503489 99503804 -182689860 - AluJb SINE Alu 0 332 18 2226 117 0 0 chr1 99503804 99504112 -182689552 + AluSq SINE Alu 1 308 -5 638 322 23 8 chr1 99504442 99504840 -182688824 - L1M4 LINE L1 -1114 5032 4629 1923 162 13 3 chr1 99504957 99505266 -182688398 - AluJo SINE Alu 0 312 1 543 253 64 124 chr1 99505459 99505992 -182687672 + MLT1J LTR MaLR 9 509 -2 621 119 0 0 chr1 99506198 99506282 -182687382 + AluS SINE Alu 1 84 -229 1854 129 47 4 chr1 99506400 99506679 -182686985 + AluSg SINE Alu 1 291 -19 274 336 147 26 chr1 99506770 99506886 -182686778 - L2 LINE L2 -7 3265 3136 26 30 0 0 chr1 99507154 99507187 -182686477 + AT_rich Low_complexity Low_complexity 1 33 0 753 162 0 0 chr1 99507187 99507304 -182686360 + FRAM SINE Alu 43 159 -17 268 315 69 31 chr1 99507352 99507482 -182686182 + MIR SINE MIR 57 191 -71 296 206 301 0 chr1 99507504 99507650 -182686014 - L2 LINE L2 -12 3301 3112 386 274 126 17 chr1 99507781 99507956 -182685708 - L2 LINE L2 -227 3086 2893 447 332 136 0 chr1 99508171 99508391 -182685273 - MIR SINE MIR -10 252 3 366 232 101 10 chr1 99508526 99508625 -182685039 - L2 LINE L2 0 3313 3206 24 32 0 0 chr1 99508690 99508721 -182684943 + AT_rich Low_complexity Low_complexity 1 31 0 878 221 20 0 chr1 99509313 99509508 -182684156 + MER3 DNA MER1_type 1 199 -10 2390 88 0 0 chr1 99509554 99509849 -182683815 - AluSg SINE Alu -15 295 1 779 169 38 0 chr1 99509914 99510097 -182683567 - L1MA7 LINE L1 0 6291 6102 2646 122 9 7 chr1 99510371 99510806 -182682858 + L1MB3 LINE L1 5747 6182 -1 927 131 56 12 chr1 99510979 99511139 -182682525 - THE1C LTR MaLR -208 167 1 9343 136 17 34 chr1 99511139 99512744 -182680920 - THE1C-int LTR MaLR 0 1580 3 1505 166 48 63 chr1 99512746 99513125 -182680539 - THE1C LTR MaLR 0 375 3 3916 190 45 16 chr1 99513128 99514473 -182679191 + L1PA14 LINE L1 2551 3923 -3661 13011 178 24 23 chr1 99514475 99515826 -182677838 + L1PA14 LINE L1 4050 5398 -2201 1822 149 35 0 chr1 99515826 99516108 -182677556 + AluSx SINE Alu 1 292 -20 13011 178 24 23 chr1 99516108 99517512 -182676152 + L1PA14 LINE L1 5398 6796 -803 2024 152 0 0 chr1 99517512 99517808 -182675856 + AluSx SINE Alu 1 296 -16 13011 178 24 23 chr1 99517808 99518608 -182675056 + L1PA14 LINE L1 6796 7594 -5 440 191 43 0 chr1 99518629 99518723 -182674941 + MLT1J1 LTR MaLR 63 160 -286 * 1045 163 5 20 chr1 99518712 99518908 -182674756 + MER20 DNA MER1_type 27 219 0 350 221 66 16 chr1 99519003 99519177 -182674487 + MLT1J LTR MaLR 252 504 -7 442 289 85 47 chr1 99519272 99519689 -182673975 + MLT1K LTR MaLR 23 530 -58 1806 94 0 0 chr1 99519689 99519922 -182673742 - AluSg SINE Alu -15 295 63 442 289 85 47 chr1 99519922 99519984 -182673680 + MLT1K LTR MaLR 530 588 0 2055 129 0 0 chr1 99520844 99521130 -182672534 - AluSg SINE Alu -24 286 1 392 208 0 0 chr1 99521193 99521265 -182672399 + MIR SINE MIR 78 149 -113 276 30 0 0 chr1 99521404 99521437 -182672227 + (GGAA)n Simple_repeat Simple_repeat 3 35 0 219 291 63 38 chr1 99521588 99521667 -182671997 + L2 LINE L2 2891 2971 -343 203 343 64 93 chr1 99521750 99521922 -182671742 + L2 LINE L2 3008 3174 -98 545 376 40 43 chr1 99522848 99523019 -182670645 - L2 LINE L2 -455 2859 2689 1921 136 46 10 chr1 99523019 99523321 -182670343 + AluSq SINE Alu 1 313 0 545 376 40 43 chr1 99523321 99523521 -182670143 - L2 LINE L2 -625 2689 2489 228 299 31 10 chr1 99523530 99523627 -182670037 + MER81 DNA DNA 6 104 -10 836 306 62 77 chr1 99523700 99524436 -182669228 - L2 LINE L2 -885 2429 1705 3061 209 40 10 chr1 99524769 99525172 -182668492 - L1 LINE L1 -3048 3800 3411 1629 201 0 29 chr1 99525172 99525480 -182668184 + AluJo SINE Alu 1 299 -13 3061 209 40 10 chr1 99525480 99525875 -182667789 - L1 LINE L1 -3437 3411 2978 462 88 22 33 chr1 99525885 99525976 -182667688 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 1664 162 0 8 chr1 99525986 99526251 -182667413 - AluJb SINE Alu -1 311 49 5622 207 52 11 chr1 99526251 99527808 -182665856 - L1 LINE L1 -3859 2989 1357 861 270 123 3 chr1 99528345 99528644 -182665020 - MER69 DNA AcHobo -2004 522 188 1620 193 112 57 chr1 99528644 99528674 -182664990 - MLT2B1 LTR ERVL 0 520 493 378 0 0 0 chr1 99528674 99528716 -182664948 + (TG)n Simple_repeat Simple_repeat 2 43 0 1620 193 112 57 chr1 99528716 99529119 -182664545 - MLT2B1 LTR ERVL -27 493 54 2101 129 48 28 chr1 99529119 99529476 -182664188 + THE1B LTR MaLR 1 364 0 1620 193 112 57 chr1 99529476 99529534 -182664130 - MLT2B1 LTR ERVL -466 54 1 1674 212 44 38 chr1 99529534 99529953 -182663711 - ERVL-B1 LTR ERVL -7 5757 5333 2404 79 3 0 chr1 99529953 99530256 -182663408 - AluY SINE Alu -7 304 1 1674 212 44 38 chr1 99530256 99530341 -182663323 - ERVL-B1 LTR ERVL -431 5333 5250 1362 174 21 4 chr1 99530344 99530580 -182663084 - ERVL-B1 LTR ERVL -1472 4292 4053 12323 173 11 13 chr1 99530591 99532835 -182660829 - ERVL-B1 LTR ERVL -519 5245 3006 1103 140 24 29 chr1 99532836 99533043 -182660621 - MSTA LTR MaLR -222 206 1 2455 233 41 4 chr1 99533048 99533611 -182660053 - ERVL-B1 LTR ERVL -5179 585 2 284 193 0 0 chr1 99533612 99533669 -182659995 - MLT2B1 LTR ERVL 0 520 464 494 43 0 29 chr1 99533727 99533797 -182659867 + (GAAA)n Simple_repeat Simple_repeat 4 71 0 965 242 82 34 chr1 99533797 99534176 -182659488 - MLT2B1 LTR ERVL -20 534 92 747 176 0 42 chr1 99534178 99534320 -182659344 + AluJo SINE Alu 1 136 -176 504 179 11 0 chr1 99534334 99534429 -182659235 - MLT2B2 LTR ERVL -417 98 3 334 214 279 29 chr1 99534431 99534571 -182659093 - MER69 DNA AcHobo -1034 192 18 1438 222 30 7 chr1 99535479 99535776 -182657888 + AluJb SINE Alu 1 304 -8 1868 135 7 7 chr1 99536708 99536989 -182656675 - AluSx SINE Alu -31 281 1 837 30 0 0 chr1 99537498 99537598 -182656066 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 3900 136 14 1 chr1 99537993 99538647 -182655017 + L1MC1 LINE L1 5649 6310 -23 936 267 108 3 chr1 99538682 99538970 -182654694 - L3b LINE CR1 -11 1572 1255 270 0 0 0 chr1 99539254 99539284 -182654380 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 202 234 0 0 chr1 99539879 99539926 -182653738 + T-rich Low_complexity Low_complexity 1 47 0 588 209 54 7 chr1 99540396 99540557 -182653107 + MLT1H LTR MaLR 4 210 -339 221 281 0 0 chr1 99542118 99542175 -182651489 - MIR SINE MIR -66 142 91 2726 10 0 3 chr1 99542280 99542584 -182651080 + AluYa5 SINE Alu 1 303 -8 582 313 143 13 chr1 99542671 99542901 -182650763 - MIR SINE MIR -1 261 2 205 360 95 46 chr1 99543303 99543670 -182649994 - L2 LINE L2 -632 2682 2298 440 200 50 10 chr1 99543672 99543772 -182649892 - L2 LINE L2 -10 3303 3200 517 326 67 42 chr1 99544297 99544610 -182649054 + MER102b DNA MER1_type 20 340 -1 194 328 0 0 chr1 99544786 99544850 -182648814 + MIR SINE MIR 88 151 -111 757 163 0 0 chr1 99544852 99544975 -182648689 + L1M2 LINE L1 5620 5742 -558 3359 122 37 17 chr1 99544975 99545573 -182648091 + L1MA8 LINE L1 5676 6285 -6 209 269 15 15 chr1 99545629 99545696 -182647968 + MIR SINE MIR 183 249 -13 2058 111 4 7 chr1 99545774 99546084 -182647580 - AluSg1 SINE Alu 0 309 10 208 286 143 36 chr1 99546121 99546205 -182647459 - L2 LINE L2 -18 3295 3203 2148 131 3 3 chr1 99546346 99546658 -182647006 + AluSx SINE Alu 1 312 0 622 315 27 35 chr1 99546778 99547035 -182646629 - MIR SINE MIR -2 260 6 742 159 0 30 chr1 99547384 99547516 -182646148 + FLAM_A SINE Alu 1 128 -5 233 279 103 52 chr1 99547708 99547844 -182645820 - MIR SINE MIR -2 260 118 264 188 0 0 chr1 99549041 99549089 -182644575 - L2 LINE L2 0 3313 3266 2635 41 0 19 chr1 99549524 99549841 -182643823 + AluY SINE Alu 1 311 0 29 28 0 0 chr1 99550044 99550080 -182643584 + AT_rich Low_complexity Low_complexity 1 36 0 972 158 11 23 chr1 99550080 99550257 -182643407 - AluJo SINE Alu -18 294 120 940 234 52 12 chr1 99550329 99550581 -182643083 - MIR SINE MIR 0 262 1 778 191 89 13 chr1 99551521 99551757 -182641907 - MER69 DNA AcHobo -7 2519 2266 533 191 48 0 chr1 99551753 99551879 -182641785 - MER69 DNA AcHobo -449 2077 1946 * 311 289 0 0 chr1 99551893 99551969 -182641695 - MER69 DNA AcHobo -100 77 2 460 208 30 72 chr1 99552451 99552687 -182640977 - L1MC5 LINE L1 -104 7857 7632 426 248 138 7 chr1 99552912 99553057 -182640607 + MIR SINE MIR 95 258 -4 276 315 65 0 chr1 99553181 99553289 -182640375 - MIR SINE MIR -76 132 18 311 252 23 69 chr1 99553964 99554095 -182639569 - L1 LINE L1 -1661 4485 4361 21 0 0 0 chr1 99554552 99554573 -182639091 + AT_rich Low_complexity Low_complexity 1 21 0 288 379 50 6 chr1 99554616 99554777 -182638887 + L3b LINE CR1 1283 1450 -133 380 322 95 81 chr1 99555413 99555907 -182637757 - L2 LINE L2 -473 2841 2341 751 164 0 8 chr1 99556267 99556389 -182637275 + FLAM_C SINE Alu 1 121 -22 317 283 42 17 chr1 99556396 99556516 -182637148 + MER5A DNA MER1_type 61 183 -6 2243 48 42 7 chr1 99556830 99557119 -182636545 - AluY SINE Alu -12 299 1 430 103 39 26 chr1 99557309 99557387 -182636277 + MER116 DNA Mariner 1 79 -1 188 299 91 0 chr1 99557859 99557974 -182635690 + MIR SINE MIR 81 208 -54 262 316 0 51 chr1 99558012 99558110 -182635554 - L2 LINE L2 -2 3270 3178 1810 70 109 21 chr1 99559030 99559315 -182634349 + AluYa8 SINE Alu 1 310 0 367 340 51 13 chr1 99559448 99559604 -182634060 - L2 LINE L2 0 3272 3111 257 230 81 75 chr1 99559870 99560044 -182633620 + MLT1K LTR MaLR 332 506 -82 439 206 69 0 chr1 99560045 99560147 -182633517 - MLT1J LTR MaLR -100 411 303 1651 209 11 19 chr1 99560174 99560542 -182633122 - MLT1A1 LTR MaLR 0 365 1 477 339 93 29 chr1 99561808 99562186 -182631478 - L2 LINE L2 -739 2575 2174 773 272 92 2 chr1 99563185 99563393 -182630271 + MIR SINE MIR 7 230 -32 1673 165 45 0 chr1 99564118 99564427 -182629237 - MER2 DNA MER2_type -6 339 17 1016 322 6 110 chr1 99567052 99567387 -182626277 - AluSx SINE Alu -2 300 1 957 226 24 97 chr1 99567566 99567887 -182625777 - MLT1G LTR MaLR -59 531 246 481 219 72 35 chr1 99568044 99568269 -182625395 + MLT1J2 LTR MaLR 8 210 -240 240 122 0 61 chr1 99568354 99568403 -182625261 + MLT1J LTR MaLR 332 377 -134 464 215 86 0 chr1 99568949 99569042 -182624622 + Charlie1 DNA MER1_type 1 101 -2660 1000 95 0 89 chr1 99569046 99569214 -182624450 + AluSx SINE Alu 1 153 -159 1113 60 0 0 chr1 99569363 99569496 -182624168 + AluSg/x SINE Alu 168 300 -12 574 252 14 0 chr1 99569497 99569640 -182624024 + Charlie1 DNA MER1_type 94 238 -2523 471 194 37 9 chr1 99569631 99569739 -182623925 + Charlie1 DNA MER1_type 2628 2738 -23 * 1491 186 47 14 chr1 99569739 99570083 -182623581 - MLT1A1 LTR MaLR 0 365 11 373 350 0 32 chr1 99571429 99571586 -182622078 + L2 LINE L2 2553 2704 -610 602 222 0 22 chr1 99571640 99571775 -182621889 - FLAM_C SINE Alu 0 133 2 663 221 214 22 chr1 99571852 99572123 -182621541 + MLT1I LTR MaLR 79 401 -8 252 393 9 0 chr1 99572224 99572331 -182621333 + L2 LINE L2 2935 3042 -230 201 389 0 0 chr1 99572383 99572455 -182621209 + L2 LINE L2 3183 3254 -59 180 0 0 0 chr1 99573053 99573073 -182620591 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr1 99573427 99573455 -182620209 + AT_rich Low_complexity Low_complexity 1 28 0 896 156 14 0 chr1 99573946 99574087 -182619577 + FRAM SINE Alu 11 153 -23 339 316 83 47 chr1 99574198 99574391 -182619273 + MIR3 SINE MIR 2 201 -7 1995 98 4 0 chr1 99574563 99574829 -182618835 + AluSc SINE Alu 2 268 -41 1710 101 9 0 chr1 99575133 99575360 -182618304 - AluSx SINE Alu -83 229 1 201 74 0 0 chr1 99576468 99576495 -182617169 + (A)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr1 99577579 99577603 -182616061 + GC_rich Low_complexity Low_complexity 1 24 0 234 91 0 0 chr1 99577818 99577851 -182615813 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 510 304 124 10 chr1 99580392 99580593 -182613071 - MIR SINE MIR -4 258 35 2353 87 0 3 chr1 99580603 99580901 -182612763 - AluSg SINE Alu -12 298 2 187 216 98 0 chr1 99581290 99581341 -182612323 + L2 LINE L2 3255 3310 -3 310 283 57 9 chr1 99581685 99581791 -182611873 - L1ME4a LINE L1 -1 6120 6010 2160 128 0 0 chr1 99582046 99582336 -182611328 + AluSx SINE Alu 1 290 -22 1774 189 0 3 chr1 99583569 99583882 -182609782 - AluJb SINE Alu 0 312 1 1507 116 122 63 chr1 99584239 99584558 -182609106 + MER44D DNA MER2_type 2 609 0 1076 229 79 82 chr1 99584658 99585253 -182608411 - L1ME4a LINE L1 -310 5860 5268 630 158 18 26 chr1 99585951 99586065 -182607599 - MER6B DNA MER2_type 0 210 98 960 202 6 0 chr1 99586075 99586248 -182607416 + FRAM SINE Alu 1 166 -10 566 206 10 0 chr1 99586249 99586351 -182607313 - MER6B DNA MER2_type -173 103 1 230 327 9 0 chr1 99586355 99586462 -182607202 - L1ME4a LINE L1 -1034 5112 5005 4846 150 46 2 chr1 99586481 99587348 -182606316 - L1MC1 LINE L1 0 6333 5429 1997 53 40 0 chr1 99587410 99587657 -182606007 + AluY SINE Alu 38 294 -17 243 132 88 29 chr1 99587771 99587839 -182605825 + (TTAA)n Simple_repeat Simple_repeat 3 74 0 221 288 52 52 chr1 99588539 99588692 -182604972 + L2 LINE L2 1968 2120 -1194 23 86 0 0 chr1 99589565 99589623 -182604041 + AT_rich Low_complexity Low_complexity 1 58 0 993 198 0 42 chr1 99590595 99590787 -182602877 + MER39B LTR ERV1 1 184 -469 225 265 99 46 chr1 99591433 99591584 -182602080 - HAL1b LINE L1 -432 916 758 208 191 24 0 chr1 99591584 99591626 -182602038 + CT-rich Low_complexity Low_complexity 1 43 0 396 279 97 23 chr1 99591658 99591842 -182601822 - L1MEd LINE L1 -1258 1232 947 2465 95 14 3 chr1 99591937 99592285 -182601379 - L1PA11 LINE L1 -8 6166 5815 1716 113 0 8 chr1 99592286 99592526 -182601138 - AluSg/x SINE Alu 0 310 73 1897 85 27 0 chr1 99592637 99592897 -182600767 - L1PA11 LINE L1 -344 5830 5564 2327 156 44 38 chr1 99592897 99593370 -182600294 + MER39B LTR ERV1 168 643 -10 1402 94 0 6 chr1 99593717 99593897 -182599767 + AluSq SINE Alu 1 179 -134 2074 130 3 3 chr1 99594505 99594813 -182598851 - AluSx SINE Alu -2 310 3 360 269 37 19 chr1 99596007 99596115 -182597549 - MIR SINE MIR -81 127 18 362 254 132 18 chr1 99596314 99596428 -182597236 - MIR3 SINE MIR -45 163 37 600 231 12 30 chr1 99596521 99596545 -182597119 - L1MA10 LINE L1 0 6334 6311 2053 240 37 37 chr1 99596545 99597187 -182596477 - L1ME1 LINE L1 -11 6224 5583 890 207 12 0 chr1 99597188 99597357 -182596307 + AluJb SINE Alu 134 304 -8 4534 203 52 53 chr1 99597357 99597969 -182595695 - L1ME1 LINE L1 -642 5593 4982 2120 82 7 24 chr1 99597969 99598260 -182595404 + AluY SINE Alu 1 286 -25 4534 203 52 53 chr1 99598260 99599301 -182594363 - L1ME1 LINE L1 -1253 4982 3945 523 185 159 5 chr1 99599290 99599479 -182594185 - L1ME1 LINE L1 -3143 3072 2855 * 439 245 43 43 chr1 99599477 99599640 -182594024 - L1ME1 LINE L1 -6199 197 35 * 245 221 39 52 chr1 99600107 99600184 -182593480 - L1ME LINE L1 -480 5641 5566 350 285 104 7 chr1 99600216 99600360 -182593304 - L1ME LINE L1 -678 5486 5329 885 133 0 15 chr1 99601183 99601318 -182592346 - AluSq/x SINE Alu -179 133 1 341 288 0 138 chr1 99601534 99601616 -182592048 - L2 LINE L2 -1 3271 3220 2062 127 10 3 chr1 99601616 99601908 -182591756 - AluSx SINE Alu -18 294 1 341 288 0 138 chr1 99601908 99601985 -182591679 - L2 LINE L2 -52 3220 3134 282 292 163 32 chr1 99602475 99602752 -182590912 - L2 LINE L2 -814 2500 2188 5371 90 17 12 chr1 99603106 99603876 -182589788 + L1PA13 LINE L1 5390 6163 0 200 216 0 0 chr1 99604464 99604501 -182589163 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 217 273 30 30 chr1 99604799 99604865 -182588799 + L2 LINE L2 3242 3307 -6 36140 65 5 12 chr1 99605333 99611011 -182582653 - L1PA6 LINE L1 -1 6153 518 185 242 121 71 chr1 99611241 99611340 -182582324 - L3b LINE CR1 -80 1503 1400 218 232 189 0 chr1 99611573 99611668 -182581996 - L3b LINE CR1 -178 1405 1293 23 33 0 0 chr1 99612445 99612475 -182581189 + AT_rich Low_complexity Low_complexity 1 30 0 270 320 55 23 chr1 99612480 99612577 -182581087 - MIR SINE MIR -128 134 31 1794 137 50 4 chr1 99612577 99612876 -182580788 - AluJb SINE Alu 0 312 1 270 320 55 23 chr1 99612876 99612906 -182580758 - MIR SINE MIR -231 31 3 254 217 83 0 chr1 99613028 99613088 -182580576 - MER20B DNA MER1_type -712 71 7 4952 83 12 22 chr1 99613187 99613920 -182579744 - L1PB1 LINE L1 0 6151 5426 1512 167 7 42 chr1 99615083 99615371 -182578293 + AluJb SINE Alu 35 312 0 249 253 33 66 chr1 99615381 99615472 -182578192 - L2 LINE L2 -48 3224 3137 2199 108 3 0 chr1 99615672 99615969 -182577695 - AluSx SINE Alu -14 298 1 1769 142 8 4 chr1 99615977 99616245 -182577419 - AluSx SINE Alu -9 303 35 280 337 12 0 chr1 99616711 99616794 -182576870 - MIR SINE MIR -94 114 31 2271 96 0 7 chr1 99617132 99617425 -182576239 - AluSg SINE Alu -16 294 4 1074 136 12 0 chr1 99617443 99617605 -182576059 - AluSg/x SINE Alu 0 312 149 1986 183 78 78 chr1 99617613 99618460 -182575204 - L1MC/D LINE L1 -536 6217 5383 * 2372 246 82 10 chr1 99618454 99619268 -182574396 - L1MC/D LINE L1 -1687 4853 3981 287 212 35 0 chr1 99619271 99619356 -182574308 - L1MC/D LINE L1 -2677 3863 3776 1195 229 93 34 chr1 99619363 99619897 -182573767 - L1MDa LINE L1 -3359 3181 2558 864 154 0 0 chr1 99619897 99620027 -182573637 - FLAM_C SINE Alu -3 130 1 1195 229 93 34 chr1 99620027 99620386 -182573278 - L1MDa LINE L1 -3982 2558 2222 984 248 122 37 chr1 99620415 99620818 -182572846 - L1MDa LINE L1 -6087 453 17 249 128 43 0 chr1 99621088 99621135 -182572529 - L1MC2 LINE L1 -11 6333 6285 1597 136 4 0 chr1 99621139 99621389 -182572275 + L1MC3 LINE L1 6328 6578 -1207 2400 77 7 0 chr1 99621451 99621750 -182571914 - AluSp SINE Alu -12 301 1 266 240 0 0 chr1 99621839 99621889 -182571775 + L2 LINE L2 2580 2629 -685 470 248 38 138 chr1 99621942 99622232 -182571432 - MLT1H LTR MaLR -114 435 175 234 222 0 0 chr1 99622289 99622334 -182571330 - MLT1H LTR MaLR -481 61 17 504 190 16 91 chr1 99622395 99622476 -182571188 + L2 LINE L2 2704 2775 -539 2091 58 4 4 chr1 99622476 99622734 -182570930 + AluY SINE Alu 37 294 -17 504 190 16 91 chr1 99622734 99622773 -182570891 + L2 LINE L2 2775 2815 -499 355 262 10 19 chr1 99622773 99622876 -182570788 - MLT1J LTR MaLR -54 457 356 520 248 74 19 chr1 99622877 99623073 -182570591 - MLT1L LTR MaLR -88 527 239 192 204 91 0 chr1 99623379 99623423 -182570241 - MIR SINE MIR -98 164 117 261 344 117 19 chr1 99624049 99624203 -182569461 + MIR3 SINE MIR 32 200 -8 23 0 0 0 chr1 99625177 99625200 -182568464 + AT_rich Low_complexity Low_complexity 1 23 0 1329 164 72 4 chr1 99625339 99625601 -182568063 + L1MA6 LINE L1 5760 6039 -261 4215 218 49 56 chr1 99625646 99626260 -182567404 - L1M2 LINE L1 -536 6715 6098 1047 194 48 9 chr1 99626260 99626444 -182567220 - MER46A DNA MER2_type -2495 236 40 1734 176 7 7 chr1 99626444 99626734 -182566930 + AluJo SINE Alu 12 301 -11 1047 194 48 9 chr1 99626734 99626776 -182566888 - MER46A DNA MER2_type -2691 40 1 4215 218 49 56 chr1 99626776 99627711 -182565953 - L1M2 LINE L1 -1153 6098 5158 1414 225 10 19 chr1 99627711 99628018 -182565646 - AluJo SINE Alu -8 304 1 4215 218 49 56 chr1 99628018 99628922 -182564742 - L1M2 LINE L1 -2093 5158 4250 1760 149 35 17 chr1 99628922 99629211 -182564453 - AluSx SINE Alu -18 294 1 4215 218 49 56 chr1 99629211 99630603 -182563061 - L1M2 LINE L1 -3001 4250 9 402 267 0 10 chr1 99631142 99631243 -182562421 + MER119 DNA MER1_type 484 583 0 713 171 16 0 chr1 99631748 99631871 -182561793 + AluJb SINE Alu 1 125 -187 992 211 204 14 chr1 99632495 99632784 -182560880 - MER2 DNA MER2_type 0 344 1 558 114 0 0 chr1 99632931 99633019 -182560645 - L1PB4 LINE L1 0 6156 6069 420 309 76 34 chr1 99633034 99633270 -182560394 - MIR SINE MIR 0 262 17 25 65 0 0 chr1 99634418 99634464 -182559200 + AT_rich Low_complexity Low_complexity 1 46 0 2007 148 3 0 chr1 99635465 99635756 -182557908 + AluSx SINE Alu 1 292 -20 619 290 16 59 chr1 99635761 99636016 -182557648 - L1ME2 LINE L1 -9 6155 5912 286 369 135 20 chr1 99636017 99636261 -182557403 + L2 LINE L2 2976 3247 -25 25 0 0 0 chr1 99636545 99636570 -182557094 + AT_rich Low_complexity Low_complexity 1 25 0 2065 114 0 7 chr1 99636979 99637277 -182556387 - AluSc SINE Alu -13 296 1 6809 155 40 35 chr1 99637566 99639955 -182553709 + L1MA7 LINE L1 3888 6291 0 22 56 0 0 chr1 99640166 99640202 -182553462 + AT_rich Low_complexity Low_complexity 1 36 0 2406 227 56 22 chr1 99640673 99641209 -182552455 - L1ME1 LINE L1 -29 6137 5572 1741 197 17 0 chr1 99641209 99641504 -182552160 + AluJo SINE Alu 1 300 -12 2406 227 56 22 chr1 99641504 99641641 -182552023 - L1ME1 LINE L1 -594 5572 5441 809 84 0 0 chr1 99641872 99641979 -182551685 + AluSc SINE Alu 192 298 -11 276 288 45 54 chr1 99642559 99642670 -182550994 + MIR3 SINE MIR 63 172 -36 263 308 85 82 chr1 99643039 99643452 -182550212 + L2 LINE L2 2162 2575 -739 202 301 54 81 chr1 99643487 99643673 -182549991 + L2 LINE L2 2676 2856 -458 208 190 0 69 chr1 99643834 99643892 -182549772 + (CATA)n Simple_repeat Simple_repeat 1 54 0 267 31 0 0 chr1 99643928 99643960 -182549704 + (CA)n Simple_repeat Simple_repeat 2 33 0 263 222 0 0 chr1 99644041 99644095 -182549569 + LTR33A LTR ERVL 439 492 -31 485 297 72 18 chr1 99644357 99645047 -182548617 - L1MEd LINE L1 -4763 1547 692 557 250 65 65 chr1 99645104 99645456 -182548208 - L1MEd LINE L1 -3645 2484 2133 274 116 0 0 chr1 99645718 99645761 -182547903 - MADE1 DNA Mariner -1 79 37 572 290 98 40 chr1 99645845 99646025 -182547639 - L1MEd LINE L1 -4612 1698 1530 2565 144 42 5 chr1 99646025 99646435 -182547229 - MSTA LTR MaLR -2 426 2 572 290 98 40 chr1 99646435 99646901 -182546763 - L1MEd LINE L1 -4780 1530 964 278 353 29 69 chr1 99646915 99647088 -182546576 - L2 LINE L2 -92 3180 3015 251 232 121 20 chr1 99648018 99648117 -182545547 + MIR SINE MIR 84 192 -70 512 299 184 14 chr1 99648157 99648364 -182545300 - MIR SINE MIR -15 247 6 2132 82 54 0 chr1 99648473 99648752 -182544912 - AluSc SINE Alu -15 294 1 666 333 106 21 chr1 99648768 99649155 -182544509 - L3 LINE CR1 -47 1530 1111 706 270 33 47 chr1 99649359 99649574 -182544090 - MIR SINE MIR -10 252 41 261 238 95 12 chr1 99649732 99649816 -182543848 + MIR SINE MIR 113 203 -59 427 187 0 0 chr1 99649876 99649977 -182543687 - FLAM_A SINE Alu 0 143 43 2347 88 7 3 chr1 99650317 99650623 -182543041 + AluSg1 SINE Alu 1 307 -2 1122 166 56 6 chr1 99650893 99650930 -182542734 + L1P LINE L1 3314 3348 -2798 5962 95 60 11 chr1 99650930 99651639 -182542025 - L1PA13 LINE L1 -2 6161 5436 2276 97 0 0 chr1 99651639 99651929 -182541735 + AluSg SINE Alu 1 290 -20 5962 95 60 11 chr1 99651929 99652276 -182541388 - L1PA13 LINE L1 -727 5436 5108 1122 166 56 6 chr1 99652276 99652489 -182541175 + L1P LINE L1 3348 3566 -2580 1155 240 28 21 chr1 99652968 99653251 -182540413 - MER82 DNA MER2_type -10 643 359 390 161 111 0 chr1 99653418 99653499 -182540165 + L1MD3 LINE L1 7905 7994 -1 201 305 17 17 chr1 99653745 99653804 -182539860 + MIR3 SINE MIR 149 207 -1 26 64 0 0 chr1 99653893 99653940 -182539724 + AT_rich Low_complexity Low_complexity 1 47 0 811 156 0 15 chr1 99654050 99654185 -182539479 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr1 99654443 99654471 -182539193 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 99654866 99654895 -182538769 + AT_rich Low_complexity Low_complexity 1 29 0 187 226 145 65 chr1 99655601 99655663 -182538001 + MER5B DNA MER1_type 87 153 -25 2362 102 3 0 chr1 99655882 99656187 -182537477 + AluSp SINE Alu 1 306 -7 1012 298 98 18 chr1 99656558 99657136 -182536528 + L2 LINE L2 2682 3313 0 1921 122 7 21 chr1 99657471 99657785 -182535879 - AluSx SINE Alu 0 310 1 417 177 121 78 chr1 99658031 99658172 -182535492 - L1MA10 LINE L1 -18 6316 6170 195 129 0 0 chr1 99658209 99658240 -182535424 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1930 122 0 53 chr1 99658349 99658669 -182534995 - AluSx SINE Alu -9 303 1 357 197 53 0 chr1 99659134 99659210 -182534454 - MER116 DNA Mariner 0 80 1 1387 134 87 4 chr1 99659967 99660198 -182533466 - Tigger3(Golem) DNA MER2_type -1 3028 2779 277 171 0 0 chr1 99660198 99660239 -182533425 - Tigger3(Golem) DNA MER2_type -2979 50 10 1773 207 57 51 chr1 99660757 99661250 -182532414 - MLT1D LTR MaLR -4 501 6 2125 158 44 22 chr1 99661306 99661728 -182531936 - MSTB1 LTR MaLR 0 419 1 2163 210 34 19 chr1 99662107 99662636 -182531028 + L1MA9 LINE L1 5738 6274 -38 21 0 0 0 chr1 99662636 99662657 -182531007 + AT_rich Low_complexity Low_complexity 1 21 0 2816 10 0 0 chr1 99663134 99663441 -182530223 - AluYa5 SINE Alu -4 307 1 206 57 57 0 chr1 99663624 99663659 -182530005 + T-rich Low_complexity Low_complexity 3 39 0 25 0 0 0 chr1 99664124 99664149 -182529515 + AT_rich Low_complexity Low_complexity 1 25 0 1879 178 12 30 chr1 99664525 99664924 -182528740 - L1MB5 LINE L1 0 6672 6281 1031 133 64 43 chr1 99664924 99665112 -182528552 + MER46A DNA MER2_type 44 235 -1 1198 243 37 10 chr1 99665112 99665408 -182528256 - L1MB5 LINE L1 -390 6282 5979 689 241 14 67 chr1 99665423 99665705 -182527959 - L1MB5 LINE L1 -3569 3075 2809 365 226 118 20 chr1 99665706 99665808 -182527856 - L1MB5 LINE L1 -3888 2758 2647 1165 155 0 0 chr1 99665824 99665998 -182527666 - AluSx SINE Alu -83 229 56 886 192 0 0 chr1 99666002 99666153 -182527511 - AluSq/x SINE Alu -162 151 1 971 201 0 0 chr1 99666186 99666360 -182527304 + FRAM SINE Alu 1 171 -5 1328 278 26 102 chr1 99666390 99667132 -182526532 - MER21B LTR ERV1 -155 708 24 344 209 57 48 chr1 99667151 99667256 -182526408 - L1MB5 LINE L1 -4020 2626 2521 1790 183 3 3 chr1 99667264 99667565 -182526099 - AluJo SINE Alu -11 301 1 1188 158 5 0 chr1 99667625 99667809 -182525855 - AluJo SINE Alu -116 196 12 1865 114 13 13 chr1 99667836 99668142 -182525522 - L1MC1 LINE L1 -347 5986 5681 414 261 192 0 chr1 99668144 99668378 -182525286 - L1MB5 LINE L1 -4180 2466 2188 2492 53 0 10 chr1 99668380 99668680 -182524984 + AluY SINE Alu 1 297 -14 245 125 0 21 chr1 99668743 99668791 -182524873 + (CCCCCT)n Simple_repeat Simple_repeat 4 50 0 3268 237 108 39 chr1 99668832 99669019 -182524645 - L1MB5 LINE L1 -4627 2019 1846 2194 119 0 0 chr1 99669019 99669312 -182524352 + AluSx SINE Alu 6 298 -14 3268 237 108 39 chr1 99669312 99670198 -182523466 - L1MB5 LINE L1 -4800 1846 1023 3331 119 14 74 chr1 99670198 99670846 -182522818 + MER4B LTR ERV1 1 609 -1 3268 237 108 39 chr1 99670846 99671270 -182522394 - L1MB5 LINE L1 -5623 1023 630 2336 78 0 32 chr1 99671270 99671579 -182522085 - AluY SINE Alu -12 299 1 3268 237 108 39 chr1 99671579 99671927 -182521737 - L1MB5 LINE L1 -6016 630 49 1954 197 80 48 chr1 99672403 99672966 -182520698 + MER119 DNA MER1_type 3 583 0 210 305 67 67 chr1 99673130 99673235 -182520429 + L2 LINE L2 3149 3253 -19 362 224 22 60 chr1 99674520 99674654 -182519010 - L1MB8 LINE L1 -4 6174 6046 2724 221 161 72 chr1 99674749 99675315 -182518349 - L1MEc LINE L1 -4898 1498 984 299 184 3 0 chr1 99675315 99675379 -182518285 + MLT1E1 LTR MaLR 403 654 0 2724 221 161 72 chr1 99675379 99676047 -182517617 - L1MEc LINE L1 -5412 984 85 1528 154 104 11 chr1 99676689 99676968 -182516696 - AluSx SINE Alu -7 305 1 30 0 0 0 chr1 99677481 99677511 -182516153 + AT_rich Low_complexity Low_complexity 1 30 0 1651 170 59 0 chr1 99677691 99677980 -182515684 - AluJo SINE Alu -6 306 1 319 252 45 0 chr1 99679277 99679388 -182514276 + Charlie7 DNA MER1_type 40 155 -2457 234 322 168 28 chr1 99679945 99680088 -182513576 - MIR3 SINE MIR -31 177 15 222 284 70 22 chr1 99680914 99680997 -182512667 - MIR3 SINE MIR -62 146 67 2275 109 3 0 chr1 99680997 99681301 -182512363 - AluSp SINE Alu -8 305 1 222 284 70 22 chr1 99681301 99681361 -182512303 - MIR3 SINE MIR -141 67 11 707 303 46 8 chr1 99681673 99681934 -182511730 - L2 LINE L2 -2296 1018 748 1971 124 3 7 chr1 99681936 99682264 -182511400 + AluSx SINE Alu 1 327 0 2243 258 164 33 chr1 99682290 99682933 -182510731 - HAL1 LINE L1 -195 2312 1754 521 101 13 0 chr1 99682933 99683012 -182510652 + MADE1 DNA Mariner 1 80 0 2243 258 164 33 chr1 99683012 99683712 -182509952 - HAL1 LINE L1 -753 1754 786 1884 138 35 3 chr1 99683712 99684001 -182509663 + AluSq SINE Alu 1 298 -15 2243 258 164 33 chr1 99684001 99684018 -182509646 - HAL1 LINE L1 -1721 786 773 2239 81 7 0 chr1 99684679 99684988 -182508676 + AluSx SINE Alu 1 311 0 782 147 0 70 chr1 99685042 99685199 -182508465 - Tigger2 DNA MER2_type -1 2717 2572 * 5001 146 26 6 chr1 99685195 99686031 -182507633 - Tigger2 DNA MER2_type -1863 855 3 1910 145 33 12 chr1 99686173 99686510 -182507154 + MER2 DNA MER2_type 1 344 0 2387 81 3 0 chr1 99686646 99686942 -182506722 + AluSp SINE Alu 5 301 -12 780 200 24 24 chr1 99686990 99687155 -182506509 + AluJo SINE Alu 116 280 -32 190 302 23 0 chr1 99687177 99687220 -182506444 + L2 LINE L2 3211 3254 -18 566 296 54 0 chr1 99688090 99688276 -182505388 - MIR SINE MIR -38 224 29 604 226 51 0 chr1 99688429 99688566 -182505098 - MIR SINE MIR -62 200 57 189 216 20 39 chr1 99688578 99688629 -182505035 - L2 LINE L2 -4 3268 3219 998 176 95 31 chr1 99688659 99688881 -182504783 - MER46A DNA MER2_type 0 236 1 227 387 95 7 chr1 99689312 99689449 -182504215 + L2 LINE L2 3123 3271 -1 2406 98 0 0 chr1 99689608 99689914 -182503750 + AluSq SINE Alu 1 306 -7 2266 93 14 0 chr1 99689920 99690209 -182503455 + AluSc SINE Alu 3 295 -14 584 176 137 0 chr1 99690405 99690507 -182503157 + FLAM_C SINE Alu 3 118 -25 250 215 139 0 chr1 99690725 99690804 -182502860 + L1MEd LINE L1 682 771 -5348 31 76 0 0 chr1 99690804 99690870 -182502794 + AT_rich Low_complexity Low_complexity 1 66 0 301 143 133 48 chr1 99690943 99691048 -182502616 + L1MC5 LINE L1 7737 7850 -111 694 256 85 22 chr1 99691054 99691403 -182502261 + L1MEd LINE L1 895 1306 -4880 942 310 58 24 chr1 99692075 99692456 -182501208 + LTR33 LTR ERVL 126 519 -2 1710 213 93 30 chr1 99692704 99693198 -182500466 - MER119 DNA MER1_type -3 580 56 2289 116 0 3 chr1 99693658 99693969 -182499695 + AluSq SINE Alu 1 310 -3 2327 149 148 25 chr1 99694220 99694782 -182498882 - LTR10E LTR ERV1 -2 631 1 2138 121 3 3 chr1 99694885 99695182 -182498482 - AluSx SINE Alu -15 297 1 300 307 0 30 chr1 99696398 99696499 -182497165 + MIR SINE MIR 159 256 -6 21 0 0 0 chr1 99696921 99696942 -182496722 + AT_rich Low_complexity Low_complexity 1 21 0 595 323 16 11 chr1 99697161 99697347 -182496317 + MIR3 SINE MIR 16 202 -6 642 201 83 35 chr1 99697588 99697817 -182495847 - L1MC5 LINE L1 -32 7929 7690 2224 110 0 46 chr1 99698699 99699026 -182494638 - AluSq SINE Alu -1 312 1 2215 109 6 0 chr1 99699263 99699574 -182494090 - AluSp SINE Alu 0 313 1 610 165 10 0 chr1 99699620 99699723 -182493941 + FLAM_A SINE Alu 30 133 -9 24 0 0 0 chr1 99700213 99700237 -182493427 + AT_rich Low_complexity Low_complexity 1 24 0 2152 100 4 0 chr1 99700842 99701160 -182492504 - AluSc SINE Alu 0 319 1 196 289 23 70 chr1 99701382 99701510 -182492154 + MIR SINE MIR 21 142 -66 1347 186 63 22 chr1 99702196 99702465 -182491199 - AluJo SINE Alu -30 282 3 2122 125 0 3 chr1 99702683 99702978 -182490686 - AluSq SINE Alu -19 294 1 2261 104 0 0 chr1 99703175 99703463 -182490201 - AluSx SINE Alu -24 288 1 414 329 85 6 chr1 99704145 99704309 -182489355 + L2 LINE L2 2370 2546 -768 1690 184 14 7 chr1 99705019 99705301 -182488363 + AluJo SINE Alu 6 289 -23 21 0 0 0 chr1 99706668 99706689 -182486975 + AT_rich Low_complexity Low_complexity 1 21 0 188 250 0 0 chr1 99706952 99706988 -182486676 - MIR SINE MIR -180 82 47 647 268 68 86 chr1 99707011 99707347 -182486317 + L2 LINE L2 2217 2546 -768 532 314 89 22 chr1 99707854 99708169 -182485495 + L2 LINE L2 2973 3308 -5 318 295 193 6 chr1 99708186 99708352 -182485312 + MIR SINE MIR 52 248 -14 2057 116 7 10 chr1 99708413 99708715 -182484949 + AluSx SINE Alu 1 301 -11 2167 125 0 0 chr1 99708800 99709103 -182484561 - AluSx SINE Alu -9 303 1 801 103 0 0 chr1 99709335 99709442 -182484222 + U6 snRNA snRNA 1 107 0 11460 107 40 1 chr1 99709442 99709982 -182483682 + L1PA7 LINE L1 3476 3994 -2160 2125 111 0 10 chr1 99709982 99710289 -182483375 + AluSg SINE Alu 1 304 -6 11460 107 40 1 chr1 99710289 99710922 -182482742 + L1PA7 LINE L1 3994 4601 -1553 2373 113 0 0 chr1 99710922 99711233 -182482431 + AluSx SINE Alu 1 311 -1 11460 107 40 1 chr1 99711233 99712699 -182480965 + L1PA7 LINE L1 4601 6141 -13 489 17 0 0 chr1 99712737 99712795 -182480869 + (TA)n Simple_repeat Simple_repeat 1 58 0 2255 108 7 0 chr1 99712810 99713117 -182480547 + AluSp SINE Alu 2 310 -3 196 293 24 49 chr1 99713452 99713534 -182480130 - L2 LINE L2 -30 3283 3204 256 333 129 62 chr1 99713540 99714308 -182479356 + L2 LINE L2 2245 3084 -188 307 250 29 0 chr1 99714339 99714407 -182479257 + L2 LINE L2 3244 3313 0 2260 94 7 3 chr1 99715136 99715435 -182478229 - AluSq SINE Alu -13 300 1 1765 168 7 19 chr1 99715495 99715804 -182477860 + AluJb SINE Alu 3 307 -5 2211 120 0 7 chr1 99715976 99716285 -182477379 + AluSx SINE Alu 1 307 -5 2256 108 0 0 chr1 99716285 99716582 -182477082 + AluSg SINE Alu 1 297 -13 431 273 14 43 chr1 99717413 99717552 -182476112 + MIR SINE MIR 16 150 -112 293 299 0 23 chr1 99717605 99717692 -182475972 + L2 LINE L2 3184 3268 -4 704 323 156 50 chr1 99717869 99718816 -182474848 + L2 LINE L2 2205 3266 -6 300 245 106 11 chr1 99718862 99718956 -182474708 - MIR SINE MIR -4 258 156 22 0 0 0 chr1 99718969 99718991 -182474673 + AT_rich Low_complexity Low_complexity 1 22 0 1035 194 0 5 chr1 99718991 99719187 -182474477 - L1PB4 LINE L1 -2 6154 5960 412 308 34 7 chr1 99719187 99719333 -182474331 - MIR SINE MIR -100 162 13 23 54 0 0 chr1 99719462 99719499 -182474165 + AT_rich Low_complexity Low_complexity 1 37 0 1777 132 117 6 chr1 99719827 99720152 -182473512 - MER46B DNA MER2_type 0 236 1 453 133 0 0 chr1 99720158 99720233 -182473431 + (TCCCC)n Simple_repeat Simple_repeat 4 78 0 2108 117 3 19 chr1 99720272 99720581 -182473083 - AluSq SINE Alu -9 304 1 27 0 0 0 chr1 99721972 99721999 -182471665 + AT_rich Low_complexity Low_complexity 1 27 0 808 271 35 9 chr1 99722550 99722779 -182470885 - MIR SINE MIR -26 236 2 240 143 0 0 chr1 99724966 99725008 -182468656 + (AAATG)n Simple_repeat Simple_repeat 3 44 0 240 35 0 0 chr1 99725161 99725190 -182468474 + (TTG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 99728108 99728130 -182465534 + AT_rich Low_complexity Low_complexity 1 22 0 342 267 138 63 chr1 99729646 99729829 -182463835 + L1ME3A LINE L1 614 782 -5337 1604 169 9 85 chr1 99729829 99730148 -182463516 + AluJo SINE Alu 1 295 -17 342 267 138 63 chr1 99730148 99730421 -182463243 + L1ME3A LINE L1 782 1104 -5015 244 229 229 0 chr1 99730429 99730525 -182463139 + L1ME3A LINE L1 1140 1257 -4862 323 273 169 23 chr1 99730545 99730717 -182462947 + HAL1 LINE L1 1397 1593 -914 260 303 38 24 chr1 99731162 99731373 -182462291 + L1ME3A LINE L1 2132 2345 -3784 2287 141 20 3 chr1 99731415 99731805 -182461859 - Tigger4(Zombi) DNA MER2_type -136 2595 2199 836 145 45 3 chr1 99731807 99732032 -182461632 - AluJb SINE Alu -19 293 1 2030 123 7 7 chr1 99732059 99732351 -182461313 + AluSp SINE Alu 1 292 -21 2022 141 21 0 chr1 99732360 99732643 -182461021 + AluSx SINE Alu 1 289 -23 896 117 89 39 chr1 99732643 99732659 -182461005 - Tigger4(Zombi) DNA MER2_type -547 2184 2170 261 0 0 0 chr1 99732659 99732688 -182460976 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 896 117 89 39 chr1 99732688 99732851 -182460813 - Tigger4(Zombi) DNA MER2_type -561 2170 1996 310 250 223 14 chr1 99732856 99733076 -182460588 + L1ME3A LINE L1 3604 3869 -2260 26 0 0 0 chr1 99733145 99733171 -182460493 + AT_rich Low_complexity Low_complexity 1 26 0 871 252 155 11 chr1 99733201 99733753 -182459911 + L1 LINE L1 4023 4661 -1468 310 241 52 69 chr1 99733980 99734096 -182459568 + L1 LINE L1 4873 4986 -1160 249 265 51 8 chr1 99734129 99734246 -182459418 + L1ME3A LINE L1 5078 5199 -930 2136 96 0 0 chr1 99734246 99734516 -182459148 + AluSg1 SINE Alu 1 270 -39 2162 121 3 3 chr1 99735625 99735922 -182457742 + AluSx SINE Alu 1 297 -15 461 203 271 20 chr1 99736025 99736276 -182457388 + LTR10E LTR ERV1 1 314 -319 1264 151 13 27 chr1 99736285 99736510 -182457154 + AluSg/x SINE Alu 89 310 0 276 30 0 0 chr1 99737300 99737333 -182456331 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1824 125 4 11 chr1 99737333 99737605 -182456059 - AluSx SINE Alu -32 280 11 2390 82 7 0 chr1 99737987 99738292 -182455372 + AluSx SINE Alu 1 307 -5 3611 86 56 11 chr1 99738295 99738831 -182454833 + L1PA10 LINE L1 5599 6158 -10 975 255 106 12 chr1 99738831 99739313 -182454351 + L1ME3A LINE L1 5372 5898 -255 243 304 43 0 chr1 99739492 99739607 -182454057 + L2 LINE L2 1002 1121 -2193 2064 125 7 0 chr1 99739614 99739910 -182453754 - AluSq SINE Alu -15 298 1 2349 109 0 3 chr1 99740028 99740340 -182453324 - AluSx SINE Alu -1 311 1 1823 143 13 10 chr1 99740525 99740658 -182453006 + AluJo SINE Alu 1 132 -180 2300 88 3 10 chr1 99740658 99740953 -182452711 + AluSx SINE Alu 2 294 -18 1823 143 13 10 chr1 99740953 99741119 -182452545 + AluJo SINE Alu 132 301 -11 187 275 188 12 chr1 99741202 99741282 -182452382 - MIR SINE MIR -99 109 16 615 291 86 0 chr1 99741368 99741695 -182451969 - L1MC4 LINE L1 -568 7474 7120 275 280 0 0 chr1 99741840 99741915 -182451749 - L1MC4a LINE L1 -963 6845 6771 189 315 0 0 chr1 99741932 99741986 -182451678 - L2 LINE L2 -212 3060 3007 2519 211 104 16 chr1 99742024 99742717 -182450947 + MER21B LTR ERV1 50 803 -60 306 0 0 0 chr1 99742957 99742991 -182450673 + (TG)n Simple_repeat Simple_repeat 2 35 0 317 331 96 7 chr1 99743540 99743676 -182449988 + MIR3 SINE MIR 10 157 -51 2210 87 14 0 chr1 99743849 99744136 -182449528 + AluSx SINE Alu 5 295 -17 216 0 0 0 chr1 99745030 99745054 -182448610 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1531 176 22 56 chr1 99745212 99745535 -182448129 + AluJo SINE Alu 1 312 0 821 106 9 0 chr1 99745536 99745678 -182447986 + AluSg/x SINE Alu 171 313 0 1996 108 0 28 chr1 99746495 99746781 -182446883 + AluSx SINE Alu 11 288 -24 22 0 0 0 chr1 99747140 99747162 -182446502 + AT_rich Low_complexity Low_complexity 1 22 0 2344 66 0 3 chr1 99747862 99748150 -182445514 + AluSc SINE Alu 1 287 -22 2025 127 24 0 chr1 99748843 99749134 -182444530 - AluSx SINE Alu -14 298 1 1972 143 23 0 chr1 99749692 99749992 -182443672 - AluSx SINE Alu -5 307 1 1291 161 5 28 chr1 99749998 99750216 -182443448 - AluSg/x SINE Alu -17 295 83 2022 132 13 10 chr1 99750327 99750638 -182443026 + AluSx SINE Alu 1 312 0 2320 104 3 0 chr1 99751145 99751442 -182442222 - AluSx SINE Alu -14 298 1 2337 106 3 0 chr1 99752033 99752336 -182441328 - AluSx SINE Alu -8 304 1 2064 118 21 3 chr1 99752364 99752653 -182441011 - AluSg SINE Alu -16 294 1 2397 91 0 0 chr1 99753223 99753521 -182440143 - AluSg SINE Alu -12 298 1 2111 124 0 7 chr1 99753912 99754224 -182439440 + AluSx SINE Alu 5 312 0 510 291 121 13 chr1 99754852 99755457 -182438207 + L1M4 LINE L1 3656 4325 -1821 745 92 0 0 chr1 99755599 99755697 -182437967 + AluSg/x SINE Alu 153 250 -62 1107 197 9 9 chr1 99755697 99755915 -182437749 + AluJo SINE Alu 85 302 -10 369 315 107 28 chr1 99755921 99756137 -182437527 + L1M4 LINE L1 3750 3982 -2164 1656 172 10 10 chr1 99756326 99756616 -182437048 + AluJb SINE Alu 3 292 -20 559 169 22 81 chr1 99756633 99756726 -182436938 + AluJo/FLAM SINE Alu 6 90 -222 1870 106 22 22 chr1 99756726 99756999 -182436665 - AluSg1 SINE Alu -36 273 1 559 169 22 81 chr1 99756999 99757041 -182436623 + AluJo/FLAM SINE Alu 90 133 -179 297 250 121 16 chr1 99757188 99757312 -182436352 - MIR SINE MIR -1 261 125 2118 100 0 42 chr1 99757409 99757719 -182435945 - AluSg SINE Alu -13 297 1 325 275 232 7 chr1 99758872 99759010 -182434654 - MIR SINE MIR -17 245 77 239 256 139 81 chr1 99759226 99759398 -182434266 + MIR SINE MIR 65 246 -16 1082 53 8 0 chr1 99759504 99759635 -182434029 + AluSp SINE Alu 1 132 -181 1859 136 54 0 chr1 99759637 99759932 -182433732 + AluSp SINE Alu 1 311 -2 33 0 0 0 chr1 99760053 99760086 -182433578 + AT_rich Low_complexity Low_complexity 1 33 0 1736 129 62 18 chr1 99760143 99760415 -182433249 + AluJb SINE Alu 1 284 -28 1733 176 20 17 chr1 99760464 99760765 -182432899 - AluJb SINE Alu -4 308 7 2367 63 0 13 chr1 99762840 99763140 -182430524 - AluY SINE Alu -15 296 1 1525 152 103 17 chr1 99763141 99763443 -182430221 - MER2 DNA MER2_type -13 332 5 587 233 60 73 chr1 99763492 99763724 -182429940 + L1ME2 LINE L1 5790 6018 -146 1917 150 10 0 chr1 99763730 99764024 -182429640 - AluSg SINE Alu -13 297 1 1878 73 4 0 chr1 99764032 99764264 -182429400 - AluY SINE Alu -15 296 64 529 267 30 15 chr1 99864529 99864660 -182329004 - L2 LINE L2 -1 3271 3139 487 233 133 13 chr1 99864682 99864832 -182328832 - MLT1I LTR MaLR -5 404 237 332 210 34 84 chr1 99864864 99864983 -182328681 - MLT1I LTR MaLR -278 131 19 552 293 32 13 chr1 99865117 99865274 -182328390 - L2 LINE L2 -212 3060 2901 533 232 123 0 chr1 99865305 99865443 -182328221 + MIR SINE MIR 32 186 -76 195 184 0 0 chr1 99865729 99865767 -182327897 + GA-rich Low_complexity Low_complexity 1 38 0 546 320 124 0 chr1 99866767 99866992 -182326672 - MIR SINE MIR -1 261 9 244 299 22 60 chr1 99868352 99868486 -182325178 - L2 LINE L2 0 3272 3144 417 271 181 0 chr1 99868535 99868690 -182324974 - MIR SINE MIR -32 230 48 305 306 43 43 chr1 99868771 99868965 -182324699 - MIR SINE MIR -64 198 9 197 217 0 43 chr1 99869273 99869319 -182324345 + MIR SINE MIR 81 124 -138 320 254 134 15 chr1 99870474 99870608 -182323056 + MIR SINE MIR 56 205 -57 229 87 43 43 chr1 99870838 99870884 -182322780 - L3 LINE CR1 -2 1575 1530 357 62 0 0 chr1 99871004 99871052 -182322612 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 553 322 81 9 chr1 99871171 99871382 -182322282 - MIR SINE MIR -17 245 20 833 285 57 21 chr1 99871739 99872020 -182321644 + L2 LINE L2 3020 3310 -3 270 143 0 0 chr1 99873930 99873979 -182319685 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chr1 99874275 99874298 -182319366 + AT_rich Low_complexity Low_complexity 1 23 0 250 211 0 28 chr1 99874926 99874997 -182318667 + A-rich Low_complexity Low_complexity 4 72 0 3753 282 51 24 chr1 99874997 99876721 -182316943 + L1MEc LINE L1 134 1911 -4485 1477 194 115 30 chr1 99876721 99877086 -182316578 + MSTD LTR MaLR 1 396 0 236 81 0 0 chr1 99877114 99877151 -182316513 - MADE1 DNA Mariner -43 37 1 426 252 56 14 chr1 99877273 99877416 -182316248 - MER103 DNA DNA -6 160 12 545 246 6 14 chr1 99877585 99877752 -182315912 - L1MA10 LINE L1 -5 6320 5992 485 258 164 19 chr1 99877815 99877974 -182315690 - MER5A DNA MER1_type -4 185 4 225 0 0 0 chr1 99878309 99878334 -182315330 + (CAT)n Simple_repeat Simple_repeat 2 26 0 233 205 0 0 chr1 99879383 99879422 -182314242 - MLT1A1 LTR MaLR -14 351 313 1141 175 0 0 chr1 99879572 99879743 -182313921 - AluJb SINE Alu -33 279 109 821 187 7 7 chr1 99880247 99880402 -182313262 - MLT1D LTR MaLR 0 505 351 * 972 248 5 0 chr1 99880400 99880622 -182313042 + MLT1D LTR MaLR 283 505 0 436 250 180 8 chr1 99880665 99880793 -182312871 + MER5A DNA MER1_type 32 181 -8 419 278 114 0 chr1 99881329 99881505 -182312159 - L1MEd LINE L1 -1273 4856 4661 683 222 23 57 chr1 99881552 99881728 -182311936 + MER58B DNA MER1_type 172 341 0 285 151 0 0 chr1 99881728 99881781 -182311883 - L1MEd LINE L1 -1461 4668 4616 345 47 0 0 chr1 99881797 99881840 -182311824 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1168 96 13 0 chr1 99881843 99881999 -182311665 - AluSc SINE Alu -25 284 127 557 253 92 29 chr1 99882002 99882318 -182311346 - L1MEd LINE L1 -1555 4574 4239 3550 295 79 39 chr1 99882328 99885399 -182308265 - L1MEd LINE L1 -2191 3938 775 433 329 26 13 chr1 99886557 99886679 -182306985 - MIR3 SINE MIR -8 200 77 256 341 11 11 chr1 99886679 99886767 -182306897 + MIR SINE MIR 2 89 -173 410 331 40 17 chr1 99886829 99887004 -182306660 + MIR SINE MIR 84 262 0 195 265 0 20 chr1 99887201 99887250 -182306414 + L2 LINE L2 3221 3268 -4 218 274 179 0 chr1 99887304 99887388 -182306276 + L2 LINE L2 3174 3272 0 312 160 0 0 chr1 99887646 99887696 -182305968 - MLT1H LTR MaLR 0 549 500 357 233 0 12 chr1 99887759 99887845 -182305819 - MLT1H-int LTR MaLR -1276 95 11 642 260 118 73 chr1 99887850 99888258 -182305406 - MLT1H LTR MaLR -1 548 123 633 216 11 6 chr1 99888407 99888583 -182305081 + (TA)n Simple_repeat Simple_repeat 1 177 0 261 273 15 0 chr1 99888587 99888653 -182305011 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 263 231 0 11 chr1 99888809 99888991 -182304673 + G-rich Low_complexity Low_complexity 1 180 0 306 245 0 0 chr1 99889089 99889187 -182304477 + (TA)n Simple_repeat Simple_repeat 1 98 0 308 304 9 17 chr1 99889203 99889318 -182304346 + (TATATG)n Simple_repeat Simple_repeat 4 117 0 225 326 0 0 chr1 99889319 99889408 -182304256 + L1MC4 LINE L1 6615 6703 -1339 * 235 315 0 0 chr1 99889346 99889435 -182304229 - L1MC4 LINE L1 -1339 6703 6615 290 195 0 59 chr1 99889474 99889643 -182304021 + (TA)n Simple_repeat Simple_repeat 2 160 0 1720 150 104 0 chr1 99889936 99890263 -182303401 + MER46B DNA MER2_type 1 236 0 273 119 0 0 chr1 99890416 99890458 -182303206 + (CA)n Simple_repeat Simple_repeat 2 43 0 541 248 54 70 chr1 99890552 99890799 -182302865 + MIR SINE MIR 19 258 -4 1026 222 20 0 chr1 99891187 99891390 -182302274 - MIR SINE MIR -44 218 12 216 232 87 0 chr1 99891328 99891397 -182302267 + MIR SINE MIR 13 87 -175 * 307 322 0 0 chr1 99891491 99891578 -182302086 - MIR SINE MIR -112 150 64 280 192 0 0 chr1 99891807 99891859 -182301805 - L2 LINE L2 0 3313 3262 24 0 0 0 chr1 99893532 99893556 -182300108 + AT_rich Low_complexity Low_complexity 1 24 0 367 360 56 47 chr1 99896107 99896552 -182297112 - L2 LINE L2 -468 2846 2398 239 410 49 7 chr1 99896542 99896686 -182296978 + L3 LINE CR1 1425 1574 -3 * 255 291 154 0 chr1 99896683 99896793 -182296871 + L2 LINE L2 3182 3308 -5 380 328 128 48 chr1 99898686 99899083 -182294581 - L3b LINE CR1 -5 1578 1150 36 0 0 0 chr1 99899113 99899149 -182294515 + AT_rich Low_complexity Low_complexity 1 36 0 662 286 26 0 chr1 99899204 99899393 -182294271 + L1ME LINE L1 5490 5683 -438 441 0 0 0 chr1 99899404 99899453 -182294211 + (CA)n Simple_repeat Simple_repeat 2 50 0 392 315 54 73 chr1 99899493 99899753 -182293911 - MIR SINE MIR -5 257 3 283 157 22 152 chr1 99899769 99899947 -182293717 + L1ME4a LINE L1 5967 6121 0 234 0 0 0 chr1 99900003 99900029 -182293635 + (CA)n Simple_repeat Simple_repeat 1 26 0 548 205 90 0 chr1 99900595 99900717 -182292947 - L2 LINE L2 -4 3268 3136 238 340 164 42 chr1 99900707 99901286 -182292378 - L2 LINE L2 -468 2846 2197 * 499 313 48 82 chr1 99901709 99901812 -182291852 + L2 LINE L2 2565 2670 -602 1450 113 45 9 chr1 99901812 99902034 -182291630 + MER30 DNA MER1_type 1 230 0 499 313 48 82 chr1 99902034 99902654 -182291010 + L2 LINE L2 2670 3272 0 261 83 0 0 chr1 99903073 99903109 -182290555 + (TC)n Simple_repeat Simple_repeat 2 37 0 346 325 8 8 chr1 99903692 99903809 -182289855 + L2 LINE L2 2256 2372 -942 643 255 26 7 chr1 99903814 99903967 -182289697 + MIR SINE MIR 6 161 -101 928 275 33 0 chr1 99904161 99904401 -182289263 + MIR SINE MIR 15 262 0 347 290 169 0 chr1 99904659 99904783 -182288881 + MIR SINE MIR 20 164 -98 260 301 41 0 chr1 99905179 99905252 -182288412 + L2 LINE L2 3230 3305 -8 242 369 12 0 chr1 99905470 99905554 -182288110 + L2 LINE L2 2235 2319 -995 341 247 30 55 chr1 99905759 99905928 -182287736 - HAL1b LINE L1 -3 6118 1191 506 267 143 26 chr1 99906260 99906526 -182287138 - L1MC/D LINE L1 -1984 5824 5528 475 331 39 13 chr1 99906698 99907003 -182286661 - L1MC/D LINE L1 -1085 5061 4749 4259 192 49 7 chr1 99907094 99907992 -182285672 - L1MD2 LINE L1 0 6753 5716 3648 229 43 41 chr1 99907998 99908756 -182284908 - L1MD2 LINE L1 -1214 5326 4571 1829 153 130 18 chr1 99908756 99909141 -182284523 - MSTA LTR MaLR 0 428 1 3648 229 43 41 chr1 99909141 99909552 -182284112 - L1MD2 LINE L1 -1969 4571 4151 2402 95 10 0 chr1 99909552 99909858 -182283806 - AluSx SINE Alu -3 309 1 3648 229 43 41 chr1 99909858 99909904 -182283760 - L1MD2 LINE L1 -2389 4151 4107 2243 234 4 7 chr1 99909895 99910349 -182283315 + L1M2 LINE L1 8 460 -6389 * 661 207 0 0 chr1 99910348 99910464 -182283200 - L1MD2 LINE L1 -6055 485 370 * 624 219 130 118 chr1 99910465 99910827 -182282837 + MLT2D LTR ERVL 1 370 -44 285 51 0 0 chr1 99910827 99910866 -182282798 + (TG)n Simple_repeat Simple_repeat 2 40 0 624 219 130 118 chr1 99910866 99910910 -182282754 + MLT2D LTR ERVL 370 412 -2 724 251 18 6 chr1 99910910 99911081 -182282583 - L1MD2 LINE L1 -6170 370 198 681 200 8 0 chr1 99911087 99911217 -182282447 - L1MD2 LINE L1 -6409 131 1 190 313 90 0 chr1 99911349 99911416 -182282248 + L2 LINE L2 3227 3299 -14 330 268 119 95 chr1 99912453 99912696 -182280968 - L2 LINE L2 0 3313 3065 1258 105 0 0 chr1 99912713 99912904 -182280760 - L1MA6 LINE L1 0 6300 6110 491 310 37 11 chr1 99913104 99913291 -182280373 - L2 LINE L2 -233 3080 2889 2738 239 87 9 chr1 99913296 99913986 -182279678 + Zaphod DNA AcHobo 1 764 -3267 4459 130 9 1 chr1 99913986 99914672 -182278992 - L1PA15 LINE L1 -1 6164 5474 2738 239 87 9 chr1 99914672 99914788 -182278876 + Zaphod DNA AcHobo 764 870 -3161 940 200 64 44 chr1 99914835 99915085 -182278579 + Zaphod DNA AcHobo 3771 4025 -6 313 292 10 0 chr1 99915112 99915208 -182278456 - L2 LINE L2 -497 2817 2721 669 274 58 36 chr1 99915542 99915765 -182277899 + MIR SINE MIR 31 258 -4 282 355 78 21 chr1 99915864 99916005 -182277659 + L3 LINE CR1 1426 1574 -3 289 254 304 0 chr1 99916541 99916679 -182276985 + MER5A DNA MER1_type 9 188 -1 372 246 95 40 chr1 99916686 99916812 -182276852 + MER5B DNA MER1_type 1 133 -45 265 291 19 48 chr1 99916990 99917093 -182276571 + MIR SINE MIR 77 176 -86 919 300 30 33 chr1 99917175 99917538 -182276126 + L2 LINE L2 2952 3313 0 6639 133 14 4 chr1 99919746 99920780 -182272884 - L1MC1 LINE L1 -6 6327 5284 850 165 0 0 chr1 99921076 99921209 -182272455 - MSTD LTR MaLR 0 396 264 805 227 88 121 chr1 99921223 99921721 -182271943 - LTR8 LTR ERV1 0 727 246 976 220 28 5 chr1 99922063 99922277 -182271387 - MSTD LTR MaLR -177 219 1 811 353 36 12 chr1 99922906 99923317 -182270347 + L3b LINE CR1 1163 1583 0 537 288 113 0 chr1 99924734 99924894 -182268770 - MER45A DNA AcHobo 0 178 1 13513 130 31 14 chr1 99925204 99927617 -182266047 + Tigger1 DNA MER2_type 4 2418 0 388 309 27 0 chr1 99927928 99928038 -182265626 - MIR SINE MIR -148 114 2 216 265 147 0 chr1 99928526 99928594 -182265070 + MIR SINE MIR 47 124 -138 1016 251 76 0 chr1 99928732 99928955 -182264709 - MIR SINE MIR -5 257 18 328 322 86 28 chr1 99929027 99929282 -182264382 + L1MC/D LINE L1 5022 5291 -855 806 305 40 20 chr1 99929283 99929723 -182263941 + L1MC/D LINE L1 5273 5726 -395 207 0 0 0 chr1 99929723 99929746 -182263918 + (CAA)n Simple_repeat Simple_repeat 2 24 0 806 305 40 20 chr1 99929746 99929803 -182263861 + L1MC/D LINE L1 5726 5780 -341 917 175 100 30 chr1 99929819 99930019 -182263645 - Tigger2a DNA MER2_type -14 430 217 19295 164 41 9 chr1 99930027 99933173 -182260491 + L1MA2 LINE L1 19 3064 -4659 2355 71 43 0 chr1 99933173 99933496 -182260168 + L1PA13 LINE L1 5825 6161 -2 19295 164 41 9 chr1 99933496 99937819 -182255845 + L1MA2 LINE L1 3064 7723 0 1294 131 13 39 chr1 99937822 99938051 -182255613 - Tigger2a DNA MER2_type -211 223 1 237 266 38 0 chr1 99938069 99938148 -182255516 + L1MC/D LINE L1 5829 5910 -1898 1953 187 38 50 chr1 99938571 99939069 -182254595 + MLT1D LTR MaLR 9 500 -5 276 161 27 116 chr1 99939069 99939116 -182254548 - L1ME4a LINE L1 -39 6082 6032 2183 103 0 3 chr1 99939116 99939416 -182254248 + AluSx SINE Alu 1 299 -13 276 161 27 116 chr1 99939416 99939480 -182254184 - L1ME4a LINE L1 -89 6032 5981 3172 206 64 53 chr1 99939537 99941157 -182252507 - L1ME1 LINE L1 -5 6161 4520 289 274 80 44 chr1 99941253 99941366 -182252298 - L2 LINE L2 0 3313 3197 382 153 0 0 chr1 99941390 99941462 -182252202 - L1PB1 LINE L1 -2211 3935 3864 6201 168 9 13 chr1 99941462 99943676 -182249988 + L1PB1 LINE L1 3937 6143 -8 29 0 0 0 chr1 99943676 99943705 -182249959 + AT_rich Low_complexity Low_complexity 1 29 0 1320 152 26 0 chr1 99944054 99944284 -182249380 - L1MA6 LINE L1 -72 6228 5993 28 29 0 0 chr1 99944296 99944331 -182249333 + AT_rich Low_complexity Low_complexity 1 35 0 326 271 45 75 chr1 99944396 99944529 -182249135 - MIR SINE MIR -133 129 1 202 258 34 0 chr1 99946685 99946774 -182246890 + (TA)n Simple_repeat Simple_repeat 2 93 0 28 48 0 0 chr1 99946856 99946898 -182246766 + AT_rich Low_complexity Low_complexity 1 42 0 229 309 0 37 chr1 99947156 99947237 -182246427 - L2 LINE L2 0 3272 3195 469 295 38 43 chr1 99947628 99947838 -182245826 - MIR SINE MIR -48 214 6 907 163 50 50 chr1 99948224 99948445 -182245219 - L1MA10 LINE L1 0 6334 6114 361 283 232 0 chr1 99950573 99950711 -182242953 + MIR3 SINE MIR 30 199 -9 29 101 0 0 chr1 99951362 99951461 -182242203 + AT_rich Low_complexity Low_complexity 1 99 0 24 0 0 29 chr1 99951575 99951589 -182242075 + AT_rich Low_complexity Low_complexity 1 14 -20 1819 104 78 11 chr1 99951589 99951857 -182241807 + AluSc SINE Alu 2 287 -22 24 0 0 29 chr1 99951857 99951877 -182241787 + AT_rich Low_complexity Low_complexity 14 34 0 1397 98 19 51 chr1 99951884 99952098 -182241566 - AluSg/x SINE Alu -7 305 99 1380 220 3 10 chr1 99952099 99952403 -182241261 + L1MC4a LINE L1 5597 5898 -1910 363 44 0 0 chr1 99952405 99952450 -182241214 + (TG)n Simple_repeat Simple_repeat 2 46 0 304 287 11 0 chr1 99952543 99952630 -182241034 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 746 247 82 42 chr1 99952680 99953036 -182240628 + L1MC4a LINE L1 5909 6278 -1530 192 278 0 0 chr1 99953058 99953130 -182240534 + GA-rich Low_complexity Low_complexity 3 74 0 2179 135 23 46 chr1 99953266 99953818 -182239846 - MER51A LTR ERV1 0 634 1 1036 241 179 14 chr1 99953818 99954253 -182239411 + L1MC4 LINE L1 6404 6910 -1132 1011 95 12 12 chr1 99954253 99954421 -182239243 + (GAAA)n Simple_repeat Simple_repeat 3 170 0 225 0 0 0 chr1 99954420 99954445 -182239219 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 * 1154 291 20 33 chr1 99954451 99954942 -182238722 + L1MC4 LINE L1 7092 7576 -466 840 231 23 25 chr1 99955608 99955959 -182237705 - L1MEc LINE L1 -3322 2893 2435 198 71 0 0 chr1 99955998 99956026 -182237638 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 755 136 0 8 chr1 99956027 99956145 -182237519 - AluJb SINE Alu -195 117 1 506 223 102 35 chr1 99956158 99956414 -182237250 - L1MEc LINE L1 -4005 2391 2119 1174 164 0 0 chr1 99956893 99957112 -182236552 + L1MA5 LINE L1 6082 6300 0 389 136 0 0 chr1 99957164 99957223 -182236441 - AluJb SINE Alu -5 297 239 1065 141 0 0 chr1 99957223 99957372 -182236292 - AluJb SINE Alu -110 202 54 301 217 0 0 chr1 99957436 99957496 -182236168 - AluJb SINE Alu -242 60 1 1820 228 128 44 chr1 99958417 99959100 -182234564 + HsTC2a DNA Tc2 2 740 -4 1744 298 81 40 chr1 99959895 99961211 -182232453 + L1ME1 LINE L1 35 1262 -4955 186 43 0 0 chr1 99961211 99961234 -182232430 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1744 298 81 40 chr1 99961234 99961401 -182232263 + L1ME1 LINE L1 1262 1421 -4796 * 3054 229 95 10 chr1 99961397 99962561 -182231103 + L1ME1 LINE L1 2098 3326 -2889 * 3293 238 75 39 chr1 99962547 99963642 -182230022 + L1ME1 LINE L1 4073 5279 -956 1749 152 0 14 chr1 99963642 99963918 -182229746 + AluSx SINE Alu 34 305 -7 3293 238 75 39 chr1 99963918 99964841 -182228823 + L1ME1 LINE L1 5279 6167 -68 240 239 90 0 chr1 99965510 99965577 -182228087 + L1MC/D LINE L1 5694 5766 -2042 35 0 0 0 chr1 99965793 99965828 -182227836 + AT_rich Low_complexity Low_complexity 1 35 0 376 229 0 0 chr1 99966002 99966085 -182227579 - L1MA9 LINE L1 -38 6274 6192 * 509 210 67 0 chr1 99966070 99966189 -182227475 + L1MA9 LINE L1 6071 6197 -115 282 164 0 33 chr1 99966190 99966251 -182227413 - L1M LINE L1 -781 5387 5329 * 1432 226 13 3 chr1 99966246 99966564 -182227100 + L1 LINE L1 4959 5279 -867 1381 159 114 19 chr1 99966566 99966830 -182226834 + AluJb SINE Alu 3 291 -21 348 24 0 0 chr1 99966848 99966889 -182226775 + (CA)n Simple_repeat Simple_repeat 2 42 0 265 338 37 39 chr1 99966999 99967189 -182226475 + MIR SINE MIR 16 203 -59 268 286 0 0 chr1 99968090 99968167 -182225497 - MIR SINE MIR -5 257 181 603 285 68 19 chr1 99968969 99969176 -182224488 - MIR SINE MIR -3 259 43 195 316 191 20 chr1 99969386 99969538 -182224126 - MIR3 SINE MIR -15 193 16 323 332 78 43 chr1 99969816 99970162 -182223502 + L2 LINE L2 2946 3303 -10 363 371 16 0 chr1 99970929 99971053 -182222611 - MIR3 SINE MIR -2 206 81 2975 117 2 0 chr1 99971494 99971930 -182221734 - L1PA15 LINE L1 -6 6159 5723 4751 194 9 1 chr1 99971930 99972857 -182220807 + L1P LINE L1 3856 4789 -1357 408 253 40 10 chr1 99973653 99973752 -182219912 - MIR SINE MIR -99 163 62 235 261 0 0 chr1 99973797 99973843 -182219821 - L2 LINE L2 -12 3260 3215 455 349 26 54 chr1 99975026 99975244 -182218420 + L2 LINE L2 2397 2601 -713 868 211 22 40 chr1 99975244 99975467 -182218197 + MER20 DNA MER1_type 1 219 0 455 349 26 54 chr1 99975467 99975635 -182218029 + L2 LINE L2 2601 2772 -542 273 357 23 47 chr1 99976116 99976356 -182217308 - MIR SINE MIR -10 252 20 270 273 18 9 chr1 99976399 99976509 -182217155 + (TA)n Simple_repeat Simple_repeat 1 111 0 198 0 0 0 chr1 99976871 99976893 -182216771 + (A)n Simple_repeat Simple_repeat 1 22 0 2054 151 0 0 chr1 99977528 99977840 -182215824 + AluSx SINE Alu 1 312 0 4911 168 36 9 chr1 99977914 99979491 -182214173 + L1PB4 LINE L1 4532 6154 -2 531 316 31 89 chr1 99980225 99980583 -182213081 - L2 LINE L2 -3 3269 2933 1757 145 69 3 chr1 99981192 99981509 -182212155 - MER44D DNA MER2_type -1 608 1 772 198 29 33 chr1 99981590 99981833 -182211831 + L1MC4a LINE L1 6909 7150 -658 1674 236 111 7 chr1 99981836 99982378 -182211286 + L1MC4a LINE L1 7211 7808 0 188 356 154 0 chr1 99982710 99982814 -182210850 - L2 LINE L2 -15 3257 3138 1436 189 105 27 chr1 99982917 99983251 -182210413 - MLT1B LTR MaLR 0 390 31 2106 134 0 7 chr1 99983251 99983550 -182210114 - AluSq SINE Alu -16 297 1 441 0 0 0 chr1 99986147 99986196 -182207468 + (CA)n Simple_repeat Simple_repeat 2 50 0 229 122 24 0 chr1 99987468 99987509 -182206155 - L2 LINE L2 0 3313 3272 383 290 81 21 chr1 99988691 99988877 -182204787 + L2 LINE L2 3117 3313 0 318 191 45 11 chr1 99989334 99989402 -182204262 - L1MCa LINE L1 -4361 2065 1992 180 0 0 0 chr1 99989402 99989422 -182204242 + (GA)n Simple_repeat Simple_repeat 2 21 0 318 191 45 11 chr1 99989422 99989442 -182204222 - L1MCa LINE L1 -4434 1992 1974 1896 165 3 0 chr1 99989727 99990024 -182203640 + AluJb SINE Alu 1 298 -14 29 28 0 0 chr1 99991627 99991663 -182202001 + AT_rich Low_complexity Low_complexity 1 36 0 217 373 0 13 chr1 99991877 99991952 -182201712 - MER5C DNA MER1_type -250 74 1 1105 147 41 83 chr1 99993035 99993071 -182200593 - MER58B DNA MER1_type -2081 339 303 1946 143 37 0 chr1 99993071 99993191 -182200473 + AluJo SINE Alu 1 115 -197 297 0 0 0 chr1 99993191 99993224 -182200440 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 1946 143 37 0 chr1 99993224 99993397 -182200267 + AluJo SINE Alu 115 305 -7 1105 147 41 83 chr1 99993397 99993626 -182200038 - MER58B DNA MER1_type -2117 303 85 4479 155 60 23 chr1 99993641 99994488 -182199176 + L1MB2 LINE L1 5134 6023 -148 2148 159 83 8 chr1 99994488 99994884 -182198780 + MSTB LTR MaLR 1 426 0 4479 155 60 23 chr1 99994884 99995035 -182198629 + L1MB2 LINE L1 6023 6167 -4 365 250 132 0 chr1 99995045 99995121 -182198543 - MER58B DNA MER1_type -253 88 3 353 345 154 28 chr1 99995340 99996225 -182197439 - L2 LINE L2 -229 3043 2047 478 270 102 36 chr1 99996237 99996433 -182197231 - MIR SINE MIR -7 255 47 292 365 27 62 chr1 99996437 99996807 -182196857 - L2 LINE L2 -1261 2053 1697 427 308 34 14 chr1 99997701 99997847 -182195817 + L2 LINE L2 2954 3102 -170 403 204 46 37 chr1 99998251 99998359 -182195305 - MER103 DNA DNA -50 116 8 14805 188 41 11 chr1 99999063 100005407 -182188257 - L1PB1 LINE L1 0 6867 179 207 100 0 0 chr1 100005647 100005677 -182187987 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 294 29 0 0 chr1 100007060 100007095 -182186569 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 100009209 100009230 -182184434 + AT_rich Low_complexity Low_complexity 1 21 0 282 395 18 0 chr1 100009638 100009752 -182183912 - L2 LINE L2 -39 3233 3118 334 307 59 0 chr1 100009856 100009957 -182183707 + L2 LINE L2 3207 3313 0 279 271 49 33 chr1 100010015 100010137 -182183527 - L2 LINE L2 -342 2930 2807 272 301 84 34 chr1 100010249 100010545 -182183119 + L2 LINE L2 2886 3196 -76 185 111 28 56 chr1 100010740 100010776 -182182888 + MIR SINE MIR 86 120 -142 23 0 0 0 chr1 100011109 100011132 -182182532 + AT_rich Low_complexity Low_complexity 1 23 0 460 289 32 34 chr1 100012749 100012972 -182180692 + MIR3 SINE MIR 2 223 -39 204 40 0 0 chr1 100013417 100013442 -182180222 + (CA)n Simple_repeat Simple_repeat 2 26 0 389 265 52 107 chr1 100013544 100013872 -182179792 + L2 LINE L2 2897 3206 -107 596 172 52 17 chr1 100014800 100014916 -182178748 - MLT1L LTR MaLR -84 531 412 436 314 24 12 chr1 100014967 100015136 -182178528 - MLT1L LTR MaLR -352 263 93 221 327 39 49 chr1 100015762 100015967 -182177697 - L2 LINE L2 -19 3294 3092 243 88 0 0 chr1 100016623 100016657 -182177007 + (TA)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr1 100017884 100017905 -182175759 + (ATTTG)n Simple_repeat Simple_repeat 5 25 0 1829 58 37 4 chr1 100017905 100018148 -182175516 - L1PA10 LINE L1 -21 6147 5897 691 213 0 0 chr1 100018157 100018279 -182175385 - FLAM_A SINE Alu -11 122 1 186 43 0 0 chr1 100019972 100019995 -182173669 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2421 133 11 0 chr1 100020188 100020548 -182173116 + THE1B LTR MaLR 1 364 0 2288 89 0 0 chr1 100021267 100021581 -182172083 + AluY SINE Alu 1 314 0 228 191 36 0 chr1 100021718 100021802 -182171862 + (TA)n Simple_repeat Simple_repeat 1 87 0 298 299 0 0 chr1 100023258 100023325 -182170339 - L2 LINE L2 -3 3310 3244 2920 103 21 2 chr1 100023478 100023897 -182169767 + MSTA LTR MaLR 2 428 0 638 289 60 78 chr1 100024198 100024713 -182168951 - REP3 LTR ERV -55 507 2 369 244 12 0 chr1 100025017 100025099 -182168565 - L2 LINE L2 -36 3277 3195 276 316 71 0 chr1 100025816 100025888 -182167776 + L2 LINE L2 3151 3229 -43 467 311 176 14 chr1 100025888 100026110 -182167554 + MIR SINE MIR 4 261 -1 389 20 0 20 chr1 100026420 100026471 -182167193 + (CA)n Simple_repeat Simple_repeat 2 51 0 2281 190 33 66 chr1 100027141 100027674 -182165990 + MLT2B3 LTR ERVL 1 515 -39 522 0 0 0 chr1 100027674 100027732 -182165932 + (TA)n Simple_repeat Simple_repeat 1 58 0 2281 190 33 66 chr1 100027732 100027771 -182165893 + MLT2B3 LTR ERVL 515 554 0 444 312 80 42 chr1 100028029 100028292 -182165372 + MLT1K LTR MaLR 316 588 0 1984 274 42 32 chr1 100028559 100029397 -182164267 + L1ME LINE L1 911 1756 -4628 * 6601 211 55 47 chr1 100029388 100032061 -182161603 + L1ME LINE L1 3318 6119 -281 7139 157 46 9 chr1 100032072 100032658 -182161006 + L1MA4A LINE L1 3868 4431 -1872 417 90 0 0 chr1 100032658 100032725 -182160939 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 7139 157 46 9 chr1 100032725 100033947 -182159717 + L1MA4A LINE L1 4431 5752 -551 6115 96 22 9 chr1 100033950 100035697 -182157967 + L1PA14 LINE L1 4398 6157 -4 2869 137 5 45 chr1 100035698 100036253 -182157411 + L1MA4A LINE L1 5771 6303 0 535 315 34 17 chr1 100036614 100036792 -182156872 - MIR SINE MIR -81 181 1 288 253 112 59 chr1 100038008 100038178 -182155486 - MIR SINE MIR -64 198 20 193 319 160 0 chr1 100039737 100039831 -182153833 - L2 LINE L2 -6 3266 3158 833 268 121 18 chr1 100041647 100041986 -182151678 - L2 LINE L2 0 3313 2940 283 291 71 41 chr1 100042534 100042730 -182150934 - L2 LINE L2 0 3313 3112 357 206 132 37 chr1 100043082 100043218 -182150446 + L2 LINE L2 3165 3313 0 249 108 0 0 chr1 100044748 100044785 -182148879 + (A)n Simple_repeat Simple_repeat 1 37 0 27 0 0 0 chr1 100045407 100045434 -182148230 + AT_rich Low_complexity Low_complexity 1 27 0 227 176 39 0 chr1 100047204 100047255 -182146409 + (TA)n Simple_repeat Simple_repeat 2 54 0 282 153 0 0 chr1 100048035 100048094 -182145570 + (TG)n Simple_repeat Simple_repeat 1 59 0 22 0 0 0 chr1 100049323 100049345 -182144319 + AT_rich Low_complexity Low_complexity 1 22 0 4376 183 35 4 chr1 100049527 100050358 -182143306 - L1MB2 LINE L1 0 6171 5315 517 188 9 0 chr1 100050361 100050473 -182143191 - L1MA4 LINE L1 -7 6293 6181 2011 128 15 9 chr1 100050912 100051247 -182142417 + L1MA2 LINE L1 5968 6304 0 2033 108 24 3 chr1 100051269 100051556 -182142108 + AluSx SINE Alu 1 293 -19 333 202 124 0 chr1 100054422 100054511 -182139153 + MER103 DNA DNA 4 103 -63 189 279 0 44 chr1 100054512 100054580 -182139084 - L2 LINE L2 -46 3267 3203 223 314 157 28 chr1 100055244 100055499 -182138165 + L2 LINE L2 3017 3304 -9 831 277 94 53 chr1 100055908 100056345 -182137319 + MLT1J LTR MaLR 1 455 -56 217 307 175 18 chr1 100057841 100057955 -182135709 + MIR3 SINE MIR 10 141 -67 243 0 0 0 chr1 100057955 100057982 -182135682 + (CTGGGG)n Simple_repeat Simple_repeat 3 29 0 523 282 109 27 chr1 100060308 100060528 -182133136 - MIR SINE MIR -10 252 15 25 31 0 0 chr1 100062425 100062457 -182131207 + AT_rich Low_complexity Low_complexity 1 32 0 13100 48 2 0 chr1 100063434 100065117 -182128547 + L1PA5 LINE L1 2259 3945 -2201 8386 31 0 0 chr1 100065111 100066106 -182127558 - L1PA5 LINE L1 -1258 4888 3894 * 7288 34 10 13 chr1 100066106 100067380 -182126284 + L1PA5 LINE L1 4884 6154 0 234 290 0 14 chr1 100067992 100068061 -182125603 + GA-rich Low_complexity Low_complexity 1 68 0 258 250 52 86 chr1 100068646 100068762 -182124902 + MIR SINE MIR 101 212 -50 299 286 41 28 chr1 100070042 100070158 -182123506 - MIR SINE MIR -85 123 4 356 333 60 19 chr1 100070564 100070780 -182122884 - L2 LINE L2 -493 2821 2597 419 356 55 32 chr1 100072547 100072800 -182120864 + MIR SINE MIR 2 260 -2 44 46 0 0 chr1 100073628 100073693 -182119971 + AT_rich Low_complexity Low_complexity 1 65 0 772 286 75 9 chr1 100074530 100074757 -182118907 + MIR SINE MIR 20 261 -1 240 265 0 0 chr1 100075522 100075571 -182118093 + polypurine Low_complexity Low_complexity 4 52 0 547 281 7 7 chr1 100075848 100075994 -182117670 + MER117 DNA MER1_type 2 147 -50 2231 110 7 0 chr1 100076366 100076676 -182116988 + AluSx SINE Alu 1 312 0 219 69 0 0 chr1 100077909 100077938 -182115726 + (T)n Simple_repeat Simple_repeat 1 29 0 186 71 0 0 chr1 100078992 100079020 -182114644 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2550 57 0 0 chr1 100080159 100080460 -182113204 - AluY SINE Alu -10 301 1 181 255 0 59 chr1 100080865 100080916 -182112748 - L2 LINE L2 -585 2729 2682 433 365 157 9 chr1 100081302 100081754 -182111910 - L2 LINE L2 -681 2633 2115 292 253 27 0 chr1 100081763 100081838 -182111826 + FLAM SINE Alu 50 115 -18 208 204 37 0 chr1 100081963 100082017 -182111647 + (TG)n Simple_repeat Simple_repeat 1 56 0 229 243 29 14 chr1 100082094 100082164 -182111500 + GA-rich Low_complexity Low_complexity 5 75 0 180 0 0 0 chr1 100082211 100082231 -182111433 + (TG)n Simple_repeat Simple_repeat 2 21 0 755 261 62 93 chr1 100084729 100085134 -182108530 - MLT1H LTR MaLR -4 545 160 488 243 79 96 chr1 100085134 100085488 -182108176 - LTR52 LTR ERVL 0 421 74 2157 126 3 7 chr1 100085488 100085797 -182107867 + AluSq SINE Alu 1 308 -5 488 243 79 96 chr1 100085797 100085870 -182107794 - LTR52 LTR ERVL -347 74 1 755 261 62 93 chr1 100085870 100086015 -182107649 - MLT1H LTR MaLR -389 160 12 231 298 19 19 chr1 100087006 100087110 -182106554 + L2 LINE L2 2464 2567 -747 242 374 48 14 chr1 100087525 100087672 -182105992 + L2 LINE L2 3162 3313 0 290 336 118 0 chr1 100089254 100089373 -182104291 + L2 LINE L2 3140 3272 0 201 308 88 39 chr1 100090694 100090876 -182102788 + L2 LINE L2 2299 2489 -825 597 308 28 6 chr1 100092088 100092270 -182101394 - MIR SINE MIR -4 258 73 1921 143 4 0 chr1 100092474 100092754 -182100910 - AluSx SINE Alu -31 281 1 315 324 90 21 chr1 100092825 100092970 -182100694 - MIR3 SINE MIR -19 189 35 210 212 165 47 chr1 100093046 100093131 -182100533 + MIR SINE MIR 3 97 -165 2614 90 3 6 chr1 100093136 100093492 -182100172 + THE1A LTR MaLR 1 355 0 262 342 77 50 chr1 100095229 100095489 -182098175 + L2 LINE L2 3005 3271 -1 597 345 70 22 chr1 100095648 100096205 -182097459 - L2 LINE L2 -66 3247 2667 979 235 23 9 chr1 100096288 100096509 -182097155 - MER58A DNA MER1_type 0 224 1 286 297 121 15 chr1 100096514 100096838 -182096826 - L1 LINE L1 -2128 4018 3660 2679 95 11 0 chr1 100096851 100097210 -182096454 - THE1B LTR MaLR -1 363 1 470 290 57 76 chr1 100097281 100097543 -182096121 + HAL1 LINE L1 118 374 -2133 320 227 57 0 chr1 100097580 100097668 -182095996 + L1MDa LINE L1 1817 1909 -4631 960 183 6 13 chr1 100097679 100097844 -182095820 + L1MB3 LINE L1 5810 5920 -263 2235 114 0 9 chr1 100097844 100098159 -182095505 + AluSx SINE Alu 1 312 0 960 183 6 13 chr1 100098159 100098215 -182095449 + L1MB3 LINE L1 5920 5975 -208 3710 201 77 45 chr1 100098421 100099504 -182094160 + L1MDb LINE L1 55 1199 -5207 1677 86 116 135 chr1 100099504 100099866 -182093798 - THE1A LTR MaLR 0 355 1 3710 201 77 45 chr1 100099866 100100560 -182093104 + L1MDb LINE L1 1199 1869 -4537 671 179 0 8 chr1 100101290 100101413 -182092251 - MSTA LTR MaLR 0 428 307 969 114 0 0 chr1 100101564 100101696 -182091968 - AluY SINE Alu -179 132 1 189 0 0 0 chr1 100101696 100101717 -182091947 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1491 146 89 0 chr1 100101720 100102001 -182091663 - L1MC3 LINE L1 -370 7415 7110 6640 88 29 1 chr1 100102001 100102934 -182090730 + HSMAR1 DNA Mariner 8 966 -321 1949 88 13 52 chr1 100102934 100103240 -182090424 + AluSc SINE Alu 1 294 -15 1073 243 88 54 chr1 100103548 100104050 -182089614 + LTR53 LTR ERVL 1 519 0 21055 96 17 2 chr1 100104441 100108305 -182085359 + L1PA7 LINE L1 2262 6152 -2 23 0 0 0 chr1 100108362 100108385 -182085279 + AT_rich Low_complexity Low_complexity 1 23 0 663 269 26 8 chr1 100108526 100108792 -182084872 - L1ME LINE L1 -301 5820 5550 28 0 0 0 chr1 100109127 100109155 -182084509 + AT_rich Low_complexity Low_complexity 1 28 0 1269 85 6 0 chr1 100109253 100109430 -182084234 + L1MA1 LINE L1 6125 6302 0 341 300 116 50 chr1 100110068 100110532 -182083132 + L1MC1 LINE L1 5313 5807 -2001 212 169 34 17 chr1 100110822 100110881 -182082783 + (TA)n Simple_repeat Simple_repeat 2 61 0 451 279 89 30 chr1 100112179 100112416 -182081248 + L1M2 LINE L1 5322 5572 -740 313 301 72 4 chr1 100112429 100112665 -182080999 + L1ME3A LINE L1 5632 5883 -287 379 97 32 0 chr1 100112793 100112855 -182080809 - THE1C LTR MaLR 0 375 312 489 201 118 42 chr1 100113062 100113206 -182080458 + L1MC1 LINE L1 6180 6327 -6 2085 114 77 11 chr1 100113505 100113857 -182079807 - THE1C LTR MaLR 0 375 1 327 256 11 0 chr1 100114234 100114324 -182079340 - MER103 DNA DNA -74 92 2 184 260 20 0 chr1 100114847 100114897 -182078767 + L2 LINE L2 3263 3313 0 26 0 0 0 chr1 100115102 100115128 -182078536 + AT_rich Low_complexity Low_complexity 1 26 0 1745 161 39 0 chr1 100115731 100116010 -182077654 + AluJo SINE Alu 1 290 -22 843 152 0 29 chr1 100117516 100117654 -182076010 + FLAM_C SINE Alu 1 134 -9 861 166 0 37 chr1 100117654 100117817 -182075847 + MER58B DNA MER1_type 181 337 -4 361 321 69 8 chr1 100118237 100118368 -182075296 + MIR3 SINE MIR 21 159 -49 485 278 63 24 chr1 100118373 100118578 -182075086 - MIR SINE MIR -2 260 48 279 289 93 0 chr1 100118769 100118866 -182074798 + MLT1J1 LTR MaLR 71 176 -270 186 263 105 0 chr1 100119056 100119113 -182074551 + L2 LINE L2 3174 3236 -36 239 326 57 106 chr1 100120419 100120523 -182073141 - L2 LINE L2 -8 3264 3157 1136 130 22 87 chr1 100120523 100120754 -182072910 - MER20 DNA MER1_type 0 219 4 239 326 57 106 chr1 100120754 100120876 -182072788 - L2 LINE L2 -115 3157 3049 1023 211 10 10 chr1 100120965 100121169 -182072495 - MIR SINE MIR -23 239 36 768 270 141 34 chr1 100121705 100122060 -182071604 + L2 LINE L2 2920 3312 -1 416 241 152 18 chr1 100122204 100122316 -182071348 - MIR SINE MIR -118 144 18 343 261 20 72 chr1 100122395 100122548 -182071116 - MIR SINE MIR -60 202 58 1341 120 30 4 chr1 100122648 100122882 -182070782 - MSTA LTR MaLR -188 240 1 4935 230 43 62 chr1 100123509 100125575 -182068089 + L1PBb LINE L1 709 2812 -3391 183 42 0 0 chr1 100125575 100125599 -182068065 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4935 230 43 62 chr1 100125599 100125763 -182067901 + L1PBb LINE L1 2812 2978 -3225 1769 62 0 0 chr1 100125763 100125974 -182067690 + AluY SINE Alu 24 234 -77 4935 230 43 62 chr1 100125974 100126900 -182066764 + L1PBb LINE L1 2978 3812 -2391 1897 252 116 39 chr1 100126929 100128040 -182065624 + L1MEc LINE L1 207 1275 -4942 2208 107 7 7 chr1 100128042 100128350 -182065314 + AluY SINE Alu 1 308 -3 1436 147 124 3 chr1 100128350 100128664 -182065000 + L1MC3 LINE L1 7430 7781 -4 2385 84 10 0 chr1 100128799 100129107 -182064557 + AluSp SINE Alu 3 313 0 303 71 14 57 chr1 100129372 100129442 -182064222 + (TTTG)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr1 100133784 100133806 -182059858 + AT_rich Low_complexity Low_complexity 1 22 0 639 298 51 69 chr1 100134139 100134572 -182059092 + MARNA DNA Mariner 73 497 -89 1397 296 70 35 chr1 100135212 100135350 -182058314 + HERV16 LTR ERVL 1005 1137 -3859 2246 58 0 0 chr1 100135350 100135625 -182058039 + AluY SINE Alu 1 275 -36 236 53 26 0 chr1 100135625 100135663 -182058001 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1397 296 70 35 chr1 100135663 100136504 -182057160 + HERV16 LTR ERVL 1136 2084 -2912 324 283 73 24 chr1 100136513 100136718 -182056946 + LTR16A LTR ERVL 239 453 -4 1312 195 43 0 chr1 100136897 100137174 -182056490 + L1MD1 LINE L1 5901 6189 -53 207 0 0 0 chr1 100137174 100137197 -182056467 + (T)n Simple_repeat Simple_repeat 1 23 0 230 358 55 9 chr1 100137918 100138027 -182055637 + L2 LINE L2 3182 3295 -18 195 100 0 0 chr1 100138198 100138228 -182055436 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 433 153 14 0 chr1 100138311 100138383 -182055281 + L1MC3 LINE L1 6702 6774 -1011 2154 121 0 26 chr1 100138483 100138789 -182054875 - AluSx SINE Alu -12 300 3 459 84 0 0 chr1 100138790 100138861 -182054803 + L1MD2 LINE L1 6287 6357 -2 218 158 70 18 chr1 100139357 100139414 -182054250 + (CAGA)n Simple_repeat Simple_repeat 3 62 0 5339 160 38 58 chr1 100139448 100139968 -182053696 + L1MB1 LINE L1 4052 4581 -1608 270 0 0 0 chr1 100139968 100139998 -182053666 + (TG)n Simple_repeat Simple_repeat 2 31 0 5339 160 38 58 chr1 100139998 100141643 -182052021 + L1MB1 LINE L1 4581 6166 -23 1793 157 24 7 chr1 100142044 100142331 -182051333 + AluSx SINE Alu 1 292 -20 330 271 59 29 chr1 100142368 100142538 -182051126 + L1MC4a LINE L1 5769 5943 -1865 2070 132 0 0 chr1 100142542 100142829 -182050835 + AluSx SINE Alu 3 289 -23 21 36 0 0 chr1 100143007 100143035 -182050629 + AT_rich Low_complexity Low_complexity 1 28 0 239 242 125 16 chr1 100143121 100143249 -182050415 + MIR SINE MIR 66 207 -55 850 301 45 35 chr1 100143525 100143924 -182049740 - LTR16C LTR ERVL 0 491 89 6907 56 1 22 chr1 100144336 100145605 -182048059 - L1PA7 LINE L1 -4 6150 4905 2451 79 7 0 chr1 100145605 100145910 -182047754 + AluY SINE Alu 2 308 -3 6907 56 1 22 chr1 100145910 100146065 -182047599 - L1PA7 LINE L1 -1249 4905 4748 3365 71 0 0 chr1 100146065 100146515 -182047149 + L1PA7 LINE L1 4295 4744 -1402 1911 169 148 14 chr1 100147601 100148040 -182045624 + MLT1D LTR MaLR 6 503 -2 22 35 0 0 chr1 100148188 100148217 -182045447 + AT_rich Low_complexity Low_complexity 1 29 0 1738 160 0 29 chr1 100148373 100148654 -182045010 + AluJo SINE Alu 1 273 -39 320 203 0 27 chr1 100148671 100148745 -182044919 + AluJ/FRAM SINE Alu 224 295 -7 393 188 0 0 chr1 100148745 100148825 -182044839 + GA-rich Low_complexity Low_complexity 1 80 0 547 280 104 7 chr1 100148955 100149243 -182044421 + HAL1b LINE L1 399 660 -688 1784 116 8 8 chr1 100149655 100149914 -182043750 - AluSc SINE Alu -14 295 37 381 286 133 15 chr1 100150052 100150248 -182043416 + HAL1 LINE L1 1 219 -2288 43 35 0 0 chr1 100150441 100150498 -182043166 + AT_rich Low_complexity Low_complexity 1 57 0 1606 181 13 30 chr1 100150525 100150828 -182042836 + AluJb SINE Alu 9 306 -6 275 125 0 0 chr1 100151018 100151066 -182042598 - Alu SINE Alu 0 302 255 1721 160 3 34 chr1 100151066 100151359 -182042305 - AluJo SINE Alu -28 284 1 28 0 0 0 chr1 100151407 100151435 -182042229 + AT_rich Low_complexity Low_complexity 1 28 0 314 190 0 0 chr1 100151444 100151502 -182042162 + Tigger3(Golem) DNA MER2_type 2970 3027 -2 1268 287 134 19 chr1 100151511 100152177 -182041487 + HAL1 LINE L1 1035 1776 -731 395 246 121 37 chr1 100152184 100152456 -182041208 + HAL1 LINE L1 1845 2139 -368 439 268 111 39 chr1 100152457 100152610 -182041054 + MIR SINE MIR 95 258 -4 225 172 35 17 chr1 100152631 100152689 -182040975 + HAL1 LINE L1 2146 2204 -303 456 243 74 26 chr1 100152716 100152905 -182040759 + HAL1 LINE L1 2310 2507 0 2492 124 8 5 chr1 100153136 100153508 -182040156 - THE1C LTR MaLR -2 373 1 2274 75 0 53 chr1 100153598 100153919 -182039745 - AluSp SINE Alu -9 304 1 237 296 14 42 chr1 100154404 100154546 -182039118 + L1P LINE L1 4882 5019 -1127 459 280 128 18 chr1 100154930 100155212 -182038452 + L1ME4a LINE L1 5510 5822 -299 292 229 189 7 chr1 100155552 100155705 -182037959 + L1ME4a LINE L1 5941 6121 0 352 282 134 17 chr1 100155726 100156017 -182037647 + L1ME4a LINE L1 5795 6119 -2 238 281 49 0 chr1 100156302 100156384 -182037280 - MIR SINE MIR -93 115 30 221 0 35 0 chr1 100156863 100156892 -182036772 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 991 223 13 35 chr1 100158409 100158638 -182035026 + MER58A DNA MER1_type 1 224 0 180 0 0 0 chr1 100158884 100158904 -182034760 + (T)n Simple_repeat Simple_repeat 1 20 0 226 281 135 0 chr1 100158906 100159002 -182034662 - Charlie3 DNA MER1_type -297 2413 2305 794 300 51 16 chr1 100159878 100160131 -182033533 - MIR SINE MIR 0 262 1 460 289 105 65 chr1 100160209 100160534 -182033130 + LTR67 LTR ERVL 218 555 -2 852 330 51 64 chr1 100160651 100161433 -182032231 - L2 LINE L2 -631 2683 1912 1997 136 3 20 chr1 100162564 100162866 -182030798 - AluSx SINE Alu -15 297 1 369 343 0 0 chr1 100163417 100163522 -182030142 - L2 LINE L2 0 3272 3168 232 298 51 56 chr1 100163665 100163880 -182029784 + L1MC4a LINE L1 4906 5119 -1027 955 196 68 14 chr1 100163881 100164211 -182029453 - MLT1E1 LTR MaLR -170 423 53 5107 124 3 8 chr1 100164273 100165041 -182028623 + L1PA15 LINE L1 5402 6165 0 25 31 0 0 chr1 100165050 100165082 -182028582 + AT_rich Low_complexity Low_complexity 1 32 0 417 37 0 0 chr1 100165082 100165136 -182028528 - L1PA6 LINE L1 -3 6151 6098 963 252 140 62 chr1 100165170 100165281 -182028383 + L1MC4a LINE L1 5305 5406 -2402 2382 41 41 3 chr1 100165281 100165576 -182028088 - AluY SINE Alu -5 306 1 963 252 140 62 chr1 100165576 100166094 -182027570 + L1MC4a LINE L1 5406 5983 -1825 189 74 0 0 chr1 100166165 100166192 -182027472 + (TAGG)n Simple_repeat Simple_repeat 4 30 0 318 275 104 72 chr1 100166622 100166844 -182026820 + HAL1 LINE L1 12 240 -2267 371 221 26 0 chr1 100166945 100167022 -182026642 + MER5A DNA MER1_type 26 104 -85 504 304 80 21 chr1 100167081 100167407 -182026257 + HAL1 LINE L1 361 705 -1802 1325 153 9 0 chr1 100167462 100167677 -182025987 + U3 snRNA snRNA 1 217 0 585 262 51 38 chr1 100167881 100168118 -182025546 + L1MC4a LINE L1 5681 5920 -1888 316 329 89 59 chr1 100168471 100169012 -182024652 + L2 LINE L2 2334 2890 -424 1487 158 4 12 chr1 100169074 100169327 -182024337 - AluJo SINE Alu -2 310 60 343 232 0 0 chr1 100169434 100169503 -182024161 + L2 LINE L2 3203 3271 -1 2251 107 0 0 chr1 100169911 100170200 -182023464 + AluSg SINE Alu 1 289 -21 417 252 120 84 chr1 100172290 100172455 -182021209 + MIR SINE MIR 4 182 -80 2018 122 10 10 chr1 100172455 100172751 -182020913 + AluSx SINE Alu 1 296 -16 417 252 120 84 chr1 100172751 100172835 -182020829 + MIR SINE MIR 182 262 0 461 264 91 0 chr1 100172920 100173030 -182020634 + MIR3 SINE MIR 41 160 -48 885 272 0 13 chr1 100173390 100173625 -182020039 + L2 LINE L2 2398 2629 -685 1510 286 115 34 chr1 100173641 100174941 -182018723 - L1MEc LINE L1 -3873 2523 1119 560 284 54 106 chr1 100175843 100176343 -182017321 + L2 LINE L2 2445 2918 -396 537 286 0 14 chr1 100176361 100176501 -182017163 + L2 LINE L2 3176 3313 0 201 175 0 0 chr1 100176928 100176968 -182016696 + (TG)n Simple_repeat Simple_repeat 1 40 0 229 156 0 0 chr1 100176968 100177013 -182016651 - LTR66 LTR ERVL -172 438 394 208 154 39 19 chr1 100177015 100177067 -182016597 + (TA)n Simple_repeat Simple_repeat 2 54 0 288 270 6 11 chr1 100177161 100177339 -182016325 + (TA)n Simple_repeat Simple_repeat 1 177 0 257 43 109 0 chr1 100177405 100177451 -182016213 + LTR66 LTR ERVL 389 439 -171 279 265 0 12 chr1 100177458 100177541 -182016123 + (TA)n Simple_repeat Simple_repeat 1 82 0 288 0 0 0 chr1 100178246 100178278 -182015386 + (GTTTG)n Simple_repeat Simple_repeat 1 32 0 421 228 126 16 chr1 100178869 100178996 -182014668 + Charlie8 DNA MER1_type 1 141 -2276 1873 158 7 3 chr1 100178997 100179301 -182014363 + AluJb SINE Alu 1 305 -7 324 278 26 115 chr1 100179304 100179495 -182014169 + MER91A DNA MER1_type 11 184 -12 368 279 129 7 chr1 100179805 100179952 -182013712 + MIR SINE MIR 78 242 -20 330 248 156 18 chr1 100180062 100180171 -182013493 + L2 LINE L2 3190 3313 0 476 187 0 0 chr1 100180464 100180555 -182013109 + L1MA4 LINE L1 6191 6281 -19 21 0 0 0 chr1 100180796 100180817 -182012847 + AT_rich Low_complexity Low_complexity 1 21 0 880 153 0 23 chr1 100182422 100182553 -182011111 - FLAM_A SINE Alu -4 129 2 232 308 76 61 chr1 100182987 100183185 -182010479 + L2 LINE L2 3112 3312 -1 1573 225 138 47 chr1 100183312 100183854 -182009810 - MLT1E LTR MaLR 0 593 2 632 312 57 19 chr1 100183858 100184172 -182009492 - LTR16C LTR ERVL -11 480 155 38 22 0 0 chr1 100184386 100184431 -182009233 + AT_rich Low_complexity Low_complexity 1 45 0 10116 231 62 32 chr1 100184705 100188365 -182005299 + L1MDb LINE L1 762 4574 -2045 2169 144 9 18 chr1 100188365 100188704 -182004960 + MER1B DNA MER1_type 1 336 -1 10116 231 62 32 chr1 100188704 100190142 -182003522 + L1MDb LINE L1 4574 5967 -652 850 347 28 12 chr1 100190164 100190487 -182003177 + LTR16A LTR ERVL 123 450 0 237 33 0 0 chr1 100190807 100190837 -182002827 + (TA)n Simple_repeat Simple_repeat 2 31 0 1742 164 0 24 chr1 100190847 100191139 -182002525 + AluJo SINE Alu 1 285 -27 446 75 15 0 chr1 100191139 100191206 -182002458 + (CATA)n Simple_repeat Simple_repeat 4 71 0 1009 230 85 26 chr1 100192824 100193094 -182000570 + AluJb SINE Alu 2 287 -15 1965 204 73 23 chr1 100193317 100193757 -181999907 - LTR40b LTR ERVL 0 462 1 3170 179 30 16 chr1 100193902 100194461 -181999203 - MLT1F1 LTR MaLR 0 567 1 12283 158 29 63 chr1 100194619 100194934 -181998730 - Tigger1 DNA MER2_type -1 2417 2093 1734 178 0 7 chr1 100194934 100195215 -181998449 - AluJb SINE Alu -28 284 6 12283 158 29 63 chr1 100195215 100195520 -181998144 - Tigger1 DNA MER2_type -325 2093 1779 2810 3 0 7 chr1 100195520 100195827 -181997837 - AluYa5 SINE Alu -6 305 1 12283 158 29 63 chr1 100195827 100196226 -181997438 - Tigger1 DNA MER2_type -639 1779 1368 2090 103 64 0 chr1 100196226 100196508 -181997156 + AluSg SINE Alu 1 300 -10 12283 158 29 63 chr1 100196508 100197986 -181995678 - Tigger1 DNA MER2_type -1050 1368 4 640 308 72 56 chr1 100198420 100198635 -181995029 - L2 LINE L2 -678 2636 2426 530 248 9 0 chr1 100198635 100198748 -181994916 - MER81 DNA DNA 0 114 1 640 308 72 56 chr1 100198748 100199198 -181994466 - L2 LINE L2 -888 2426 1960 1590 107 9 0 chr1 100199451 100199666 -181993998 - AluSq SINE Alu 0 313 97 348 222 120 9 chr1 100199768 100199876 -181993788 - MIR SINE MIR -6 256 137 830 11 0 0 chr1 100202678 100202872 -181990792 + AluY SINE Alu 191 384 0 25 65 0 0 chr1 100203067 100203113 -181990551 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 100203987 100204010 -181989654 + AT_rich Low_complexity Low_complexity 1 23 0 259 238 32 0 chr1 100205644 100205707 -181987957 + A-rich Low_complexity Low_complexity 2 66 0 21 23 0 47 chr1 100207554 100207569 -181986095 + AT_rich Low_complexity Low_complexity 1 15 -26 2220 103 0 3 chr1 100207569 100207859 -181985805 + AluSx SINE Alu 1 289 -23 21 23 0 47 chr1 100207859 100207886 -181985778 + AT_rich Low_complexity Low_complexity 15 41 0 30 27 0 0 chr1 100207905 100207942 -181985722 + AT_rich Low_complexity Low_complexity 1 37 0 221 340 39 0 chr1 100207964 100208067 -181985597 - L2 LINE L2 -12 3301 3195 2390 84 3 0 chr1 100208285 100208583 -181985081 - AluY SINE Alu -12 299 1 1008 161 54 74 chr1 100208643 100208885 -181984779 - AluJo SINE Alu -75 237 1 1717 157 52 0 chr1 100208920 100209206 -181984458 - AluJb SINE Alu -9 303 3 865 198 6 6 chr1 100212540 100212697 -181980967 + AluJb SINE Alu 122 278 -34 405 0 0 0 chr1 100212697 100212742 -181980922 + (TC)n Simple_repeat Simple_repeat 2 46 0 600 94 28 0 chr1 100212742 100212848 -181980816 + (TA)n Simple_repeat Simple_repeat 1 109 0 1927 161 0 7 chr1 100212949 100213247 -181980417 - AluJb SINE Alu -14 298 3 245 361 0 0 chr1 100213740 100213801 -181979863 + L3b LINE CR1 1510 1570 -13 783 169 17 11 chr1 100218917 100219094 -181974570 + GA-rich Low_complexity Low_complexity 3 180 0 219 116 23 47 chr1 100221637 100221680 -181971984 + CT-rich Low_complexity Low_complexity 2 43 0 22 35 0 0 chr1 100224730 100224759 -181968905 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 100224883 100224905 -181968759 + (T)n Simple_repeat Simple_repeat 1 22 0 344 209 189 92 chr1 100226503 100226709 -181966955 - L1M2 LINE L1 -6045 804 579 257 325 0 0 chr1 100227213 100227295 -181966369 + G-rich Low_complexity Low_complexity 1 82 0 231 191 0 0 chr1 100227545 100227608 -181966056 + GA-rich Low_complexity Low_complexity 2 64 0 46 54 0 0 chr1 100227708 100227782 -181965882 + GC_rich Low_complexity Low_complexity 1 74 0 372 213 198 108 chr1 100228283 100228597 -181965067 - L1M2 LINE L1 -5831 1018 677 243 0 0 0 chr1 100229217 100229244 -181964420 + (A)n Simple_repeat Simple_repeat 1 27 0 237 322 113 28 chr1 100231950 100232127 -181961537 + MIR SINE MIR 21 212 -50 201 300 100 0 chr1 100232248 100232308 -181961356 - L2 LINE L2 0 3272 3207 336 102 0 0 chr1 100238506 100238555 -181955109 + (GGA)n Simple_repeat Simple_repeat 1 49 0 25 0 0 0 chr1 100239011 100239036 -181954628 + AT_rich Low_complexity Low_complexity 1 25 0 211 196 0 0 chr1 100240240 100240286 -181953378 + (CCG)n Simple_repeat Simple_repeat 3 48 0 198 103 0 0 chr1 100240508 100240537 -181953127 + (TTC)n Simple_repeat Simple_repeat 2 30 0 183 42 0 0 chr1 100243280 100243304 -181950360 + (TTG)n Simple_repeat Simple_repeat 2 25 0 249 33 0 0 chr1 100245095 100245125 -181948539 + (CA)n Simple_repeat Simple_repeat 2 31 0 2316 82 3 3 chr1 100245988 100246282 -181947382 + AluSc SINE Alu 1 294 -15 299 270 12 155 chr1 100246381 100246703 -181946961 - L2 LINE L2 -61 3211 2936 236 200 20 0 chr1 100247034 100247084 -181946580 - MIR SINE MIR -50 212 162 1003 160 0 29 chr1 100247085 100247260 -181946404 + FRAM SINE Alu 1 164 -12 2374 94 0 0 chr1 100247507 100247814 -181945850 + AluSx SINE Alu 2 308 -4 280 219 16 0 chr1 100247924 100247988 -181945676 - L3 LINE CR1 -201 1376 1312 256 232 18 0 chr1 100247998 100248052 -181945612 - L3 LINE CR1 -369 1208 1154 236 293 146 0 chr1 100248052 100248175 -181945489 + MIR SINE MIR 1 141 -121 22 35 0 0 chr1 100248234 100248263 -181945401 + AT_rich Low_complexity Low_complexity 1 29 0 329 291 47 0 chr1 100248263 100248349 -181945315 - L3 LINE CR1 -427 1150 1061 203 0 37 0 chr1 100249096 100249123 -181944541 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 263 348 22 0 chr1 100249149 100249238 -181944426 + MIR SINE MIR 29 119 -89 366 248 0 44 chr1 100250079 100250192 -181943472 + LTR33A LTR ERVL 411 518 -5 259 419 13 0 chr1 100250200 100250355 -181943309 - L3 LINE CR1 -42 1535 1379 410 211 156 8 chr1 100250406 100250534 -181943130 + MIR SINE MIR 46 192 -70 287 233 14 14 chr1 100250553 100250626 -181943038 - L3 LINE CR1 -200 1377 1305 470 353 24 24 chr1 100250634 100250804 -181942860 - MER91A DNA MER1_type -1 195 26 3587 172 56 32 chr1 100251291 100252133 -181941531 - Zaphod DNA AcHobo -2 4029 3168 1079 170 5 58 chr1 100252133 100252356 -181941308 + AluJo SINE Alu 87 297 -15 2605 219 50 42 chr1 100252374 100252728 -181940936 - Zaphod DNA AcHobo -855 3176 2826 2266 109 0 0 chr1 100252728 100253022 -181940642 + AluSx SINE Alu 1 294 -18 2605 219 50 42 chr1 100253022 100253429 -181940235 - Zaphod DNA AcHobo -1205 2826 2409 2679 226 112 3 chr1 100253432 100254082 -181939582 - Zaphod DNA AcHobo -3252 779 59 268 287 129 0 chr1 100254287 100254388 -181939276 - MIR SINE MIR -61 147 34 207 322 119 0 chr1 100255044 100255162 -181938502 + L2 LINE L2 3182 3313 0 1995 134 7 0 chr1 100255174 100255464 -181938200 - AluJo SINE Alu -15 297 6 680 163 22 7 chr1 100255479 100255614 -181938050 - Charlie1 DNA MER1_type -6 2755 2619 * 2054 234 32 2 chr1 100255589 100256059 -181937605 - Charlie1 DNA MER1_type -2272 489 6 1619 208 89 56 chr1 100256188 100256737 -181936927 - MLT1F1 LTR MaLR 0 567 1 741 270 159 33 chr1 100257042 100257428 -181936236 + MLT1J LTR MaLR 39 461 -15 429 172 16 78 chr1 100257511 100257639 -181936025 + L1MC1 LINE L1 6213 6332 -1 310 263 89 80 chr1 100257702 100257915 -181935749 - L2 LINE L2 -6 3307 3093 289 266 11 43 chr1 100258653 100258747 -181934917 + MIR SINE MIR 3 93 -169 696 251 38 11 chr1 100258784 100258967 -181934697 + MIR SINE MIR 75 262 0 534 298 232 6 chr1 100261611 100261930 -181931734 + L2 LINE L2 2862 3252 -61 479 293 48 32 chr1 100262550 100262738 -181930926 - MIR SINE MIR -71 191 1 254 326 63 11 chr1 100263860 100263955 -181929709 - L2 LINE L2 -20 3252 3153 233 167 345 12 chr1 100264006 100264090 -181929574 - MER5A DNA MER1_type 0 189 78 2688 164 24 14 chr1 100264102 100264597 -181929067 - L1MA4 LINE L1 -1 6299 5800 358 167 0 69 chr1 100264676 100264748 -181928916 - MER5A DNA MER1_type -114 75 9 24 0 0 0 chr1 100265004 100265028 -181928636 + AT_rich Low_complexity Low_complexity 1 24 0 2326 72 0 0 chr1 100265035 100265314 -181928350 - AluSx SINE Alu -25 287 9 2080 125 0 0 chr1 100265703 100266023 -181927641 + AluSx SINE Alu 5 324 0 507 235 101 7 chr1 100266080 100266229 -181927435 + MIR SINE MIR 66 228 -34 2983 146 11 38 chr1 100266501 100266880 -181926784 - L1MB3 LINE L1 -10 6173 5785 2301 112 0 0 chr1 100266880 100267184 -181926480 + AluSx SINE Alu 1 304 -8 2983 146 11 38 chr1 100267184 100267245 -181926419 - L1MB3 LINE L1 -398 5785 5747 2902 85 3 6 chr1 100267245 100267610 -181926054 + THE1B LTR MaLR 1 364 0 2983 146 11 38 chr1 100267610 100267690 -181925974 - L1MB3 LINE L1 -436 5747 5666 280 301 133 0 chr1 100267894 100268007 -181925657 - MIR SINE MIR -117 145 18 367 267 72 7 chr1 100268205 100268392 -181925272 - LTR16A LTR ERVL 0 450 216 1245 149 14 34 chr1 100268401 100268609 -181925055 - AluJo SINE Alu -23 289 86 269 192 72 120 chr1 100272444 100272481 -181921183 + MER94 DNA DNA 1 38 -96 2304 117 0 0 chr1 100272481 100272789 -181920875 - AluSx SINE Alu -4 308 1 269 192 72 120 chr1 100272789 100272876 -181920788 + MER94 DNA DNA 38 119 -15 2775 119 10 5 chr1 100273132 100273545 -181920119 - MER41B LTR ERV1 0 635 221 1117 135 0 0 chr1 100273546 100273743 -181919921 - AluSg/x SINE Alu 0 312 134 1481 144 4 0 chr1 100273743 100273972 -181919692 - MER41B LTR ERV1 -405 230 1 270 215 0 0 chr1 100274005 100274084 -181919580 + (CTA)n Simple_repeat Simple_repeat 3 81 0 273 220 0 0 chr1 100274084 100274134 -181919530 - MIR SINE MIR -2 260 211 335 244 13 0 chr1 100274219 100274297 -181919367 - MIR SINE MIR -83 179 101 574 286 76 30 chr1 100274612 100274874 -181918790 - L3 LINE CR1 -31 1546 1273 13342 113 10 47 chr1 100275148 100277975 -181915689 - L1PA10 LINE L1 -15 6153 3393 303 28 0 0 chr1 100279204 100279240 -181914424 + (TG)n Simple_repeat Simple_repeat 2 37 0 221 317 0 0 chr1 100279300 100279360 -181914304 - L2 LINE L2 -4 3309 3250 1462 136 28 0 chr1 100279876 100280089 -181913575 - MER20 DNA MER1_type 0 219 1 213 414 47 9 chr1 100280523 100280755 -181912909 - L2 LINE L2 -644 2670 2430 906 230 40 5 chr1 100281231 100281453 -181912211 + Charlie1 DNA MER1_type 9 238 -2523 572 0 15 0 chr1 100281481 100281549 -181912115 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2286 120 13 65 chr1 100281562 100281746 -181911918 + THE1B LTR MaLR 1 156 -208 7117 52 36 1 chr1 100281746 100282659 -181911005 + L1PA6 LINE L1 5199 6141 -13 2286 120 13 65 chr1 100282659 100282857 -181910807 + THE1B LTR MaLR 156 363 -1 415 121 55 110 chr1 100282858 100282949 -181910715 + Charlie1 DNA MER1_type 2676 2761 0 301 245 78 39 chr1 100283484 100283586 -181910078 - HAL1 LINE L1 -811 1696 1591 371 330 80 47 chr1 100283671 100283947 -181909717 - L1MEd LINE L1 -5776 343 59 1909 133 12 47 chr1 100285379 100285701 -181907963 + AluJo SINE Alu 1 311 -1 484 350 37 18 chr1 100285846 100286063 -181907601 - MIR SINE MIR -19 243 23 803 295 72 16 chr1 100286078 100286454 -181907210 + L1MC4a LINE L1 5496 5892 -1916 629 300 118 13 chr1 100287603 100287840 -181905824 - MIR SINE MIR 0 262 1 1263 307 58 22 chr1 100288545 100289398 -181904266 + ERVL LTR ERVL 3950 4858 -906 575 257 25 95 chr1 100289403 100289761 -181903903 + ERVL LTR ERVL 5046 5378 -386 1037 288 63 5 chr1 100289803 100290292 -181903372 - L2 LINE L2 -184 3129 2613 421 221 24 154 chr1 100290638 100290911 -181902753 - MIR SINE MIR -28 234 9 1931 128 14 4 chr1 100292246 100292569 -181901095 - AluSx SINE Alu 0 326 1 442 326 67 6 chr1 100292618 100292796 -181900868 - MIR SINE MIR -54 208 20 910 254 28 5 chr1 100293893 100294106 -181899558 - MIR SINE MIR -38 224 7 420 288 85 61 chr1 100294194 100294406 -181899258 + MIR SINE MIR 2 218 -44 806 242 162 32 chr1 100294801 100295115 -181898549 + L2 LINE L2 2959 3313 0 375 323 81 8 chr1 100295113 100295237 -181898427 - MIR3 SINE MIR -66 142 10 * 1320 206 101 90 chr1 100295970 100296503 -181897161 - MLT1H LTR MaLR -3 546 8 872 321 144 23 chr1 100296510 100297462 -181896202 + L2 LINE L2 1720 2786 -528 2010 92 0 0 chr1 100298142 100298428 -181895236 - AluSc SINE Alu 0 318 33 183 258 65 32 chr1 100298625 100298687 -181894977 + L2 LINE L2 3245 3308 -5 2354 112 140 29 chr1 100298705 100298746 -181894918 - MSTA LTR MaLR 0 428 393 2123 127 0 35 chr1 100298746 100299061 -181894603 + AluSg SINE Alu 1 304 -6 2354 112 140 29 chr1 100299061 100299404 -181894260 - MSTA LTR MaLR -35 393 1 667 208 8 8 chr1 100299405 100299525 -181894139 + MER5A DNA MER1_type 1 120 -69 1928 205 28 49 chr1 100299526 100299995 -181893669 + MLT1D LTR MaLR 2 460 -45 1282 131 10 30 chr1 100300056 100300170 -181893494 - L1PB4 LINE L1 -2 6154 6044 2074 139 54 35 chr1 100300170 100300538 -181893126 - THE1C LTR MaLR 0 375 1 1282 131 10 30 chr1 100300538 100300621 -181893043 - L1PB4 LINE L1 -112 6044 5961 1987 90 10 41 chr1 100300862 100301188 -181892476 - AluSx SINE Alu 0 317 1 236 188 45 125 chr1 100301210 100301322 -181892342 + L2 LINE L2 3168 3270 -2 488 185 22 11 chr1 100302113 100302205 -181891459 + MLT1D LTR MaLR 474 566 -24 358 116 43 0 chr1 100302221 100302290 -181891374 + L1PB4 LINE L1 6084 6155 -1 438 276 30 0 chr1 100302731 100302865 -181890799 + MIR SINE MIR 70 207 -55 317 324 142 0 chr1 100303081 100303229 -181890435 + MER117 DNA MER1_type 3 171 -26 290 284 2 0 chr1 100303404 100303484 -181890180 - MIR SINE MIR -84 124 44 380 295 106 30 chr1 100303702 100303939 -181889725 + MIR SINE MIR 4 258 -4 255 203 136 42 chr1 100306088 100306206 -181887458 - L1ME4a LINE L1 -4 6117 5989 414 234 83 36 chr1 100306256 100306448 -181887216 - L1ME4a LINE L1 -236 5885 5685 464 302 89 12 chr1 100306449 100306618 -181887046 - MER5A DNA MER1_type -1 188 7 236 240 0 0 chr1 100306620 100306670 -181886994 - L1ME4a LINE L1 -439 5682 5633 730 260 37 62 chr1 100307394 100307512 -181886152 - L1ME3A LINE L1 -11 6159 6039 2351 110 0 0 chr1 100307512 100307822 -181885842 + AluSg SINE Alu 1 310 0 730 260 37 62 chr1 100307822 100307976 -181885688 - L1ME3A LINE L1 -131 6039 5894 714 156 139 0 chr1 100308149 100308271 -181885393 + AluJb SINE Alu 166 304 -8 338 336 109 38 chr1 100308388 100308626 -181885038 + MIR SINE MIR 2 256 -6 201 39 0 0 chr1 100310833 100310859 -181882805 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6476 137 7 29 chr1 100310892 100311952 -181881712 - L1MC1 LINE L1 -1 6612 5577 2417 72 3 10 chr1 100311957 100312262 -181881402 - AluSc SINE Alu -6 303 1 379 292 33 0 chr1 100312266 100312386 -181881278 - L1MC1 LINE L1 -984 5442 5319 3611 162 22 29 chr1 100312388 100312764 -181880900 + MER73 LTR ERVL 18 390 -254 1643 173 14 14 chr1 100312764 100313059 -181880605 + AluJb SINE Alu 1 295 -17 3611 162 22 29 chr1 100313059 100313313 -181880351 + MER73 LTR ERVL 390 644 0 8117 210 36 51 chr1 100313313 100314026 -181879638 - L1MC1 LINE L1 -1103 5323 4601 274 111 0 0 chr1 100314026 100314062 -181879602 - MADE1 DNA Mariner 0 80 45 8117 210 36 51 chr1 100314062 100315327 -181878337 - L1MC1 LINE L1 -1825 4601 3345 830 133 27 40 chr1 100315327 100315477 -181878187 - L1PA15 LINE L1 -1 6164 6017 8117 210 36 51 chr1 100315477 100315707 -181877957 - L1MC1 LINE L1 -3081 3345 3113 5453 169 45 75 chr1 100315679 100316848 -181876816 - L1MC1 LINE L1 -5288 1138 6 * 982 257 127 29 chr1 100316950 100317335 -181876329 - MLT1H LTR MaLR -98 451 29 355 266 240 13 chr1 100317351 100317505 -181876159 + MIR SINE MIR 45 233 -29 2320 101 3 0 chr1 100318145 100318451 -181875213 - AluSc SINE Alu -2 307 1 2251 131 0 0 chr1 100320198 100320503 -181873161 - AluSx SINE Alu -7 305 1 239 277 36 24 chr1 100320511 100320594 -181873070 - MIR SINE MIR -75 187 104 341 333 7 29 chr1 100320883 100321021 -181872643 - L2 LINE L2 0 3313 3179 2185 137 0 0 chr1 100321075 100321381 -181872283 - AluSq SINE Alu -7 306 1 1391 208 66 64 chr1 100321615 100322068 -181871596 + L1MC5 LINE L1 7076 7529 -432 2027 125 4 0 chr1 100322072 100322353 -181871311 + AluSx SINE Alu 1 282 -30 1164 155 21 50 chr1 100322687 100322926 -181870738 - AluJb SINE Alu 0 312 81 1699 186 7 7 chr1 100322975 100323266 -181870398 + AluJo SINE Alu 1 291 -21 23 0 0 0 chr1 100324621 100324644 -181869020 + AT_rich Low_complexity Low_complexity 1 23 0 585 267 68 0 chr1 100325399 100325545 -181868119 + MIR SINE MIR 1 156 -106 277 316 155 25 chr1 100325791 100326107 -181867557 + L2 LINE L2 2220 2576 -738 835 345 82 21 chr1 100326146 100326572 -181867092 + MLT1K LTR MaLR 121 572 -16 928 298 29 76 chr1 100326593 100327077 -181866587 + L2 LINE L2 2517 2977 -337 220 270 0 54 chr1 100327261 100327335 -181866329 + L2 LINE L2 3225 3294 -19 483 278 15 0 chr1 100327358 100327491 -181866173 + MIR SINE MIR 55 189 -73 2544 175 11 81 chr1 100327535 100327577 -181866087 - MLT2B1 LTR ERVL 0 520 477 355 38 38 0 chr1 100327577 100327630 -181866034 + (CA)n Simple_repeat Simple_repeat 2 56 0 2544 175 11 81 chr1 100327630 100327649 -181866015 - MLT2B1 LTR ERVL -43 477 458 301 75 38 0 chr1 100327649 100327702 -181865962 + (TA)n Simple_repeat Simple_repeat 1 55 0 2544 175 11 81 chr1 100327702 100328113 -181865551 - MLT2B1 LTR ERVL -62 458 89 2418 127 33 28 chr1 100328113 100328475 -181865189 + THE1B LTR MaLR 1 364 0 2544 175 11 81 chr1 100328475 100328559 -181865105 - MLT2B1 LTR ERVL -431 89 1 1520 193 70 21 chr1 100328773 100329100 -181864564 - MER2 DNA MER2_type -1 343 1 189 229 129 57 chr1 100329513 100329574 -181864090 - MIR SINE MIR -71 191 123 2316 88 14 0 chr1 100329574 100329871 -181863793 + AluSq SINE Alu 1 301 -12 351 280 72 52 chr1 100329909 100330102 -181863562 + L2 LINE L2 3117 3313 0 2006 117 3 39 chr1 100332290 100332599 -181861065 + AluSx SINE Alu 13 310 -2 248 335 68 44 chr1 100332691 100332939 -181860725 - L2 LINE L2 -170 3102 2849 290 287 98 49 chr1 100332969 100333234 -181860430 - L2 LINE L2 -429 2885 2608 190 233 55 55 chr1 100333220 100333293 -181860371 - L2 LINE L2 -3 3310 3238 * 396 0 0 0 chr1 100333722 100333766 -181859898 + (CA)n Simple_repeat Simple_repeat 2 45 0 240 336 0 10 chr1 100334131 100334235 -181859429 + T-rich Low_complexity Low_complexity 1 103 0 245 292 34 11 chr1 100334540 100334629 -181859035 + MIR SINE MIR 63 153 -109 673 247 219 37 chr1 100335144 100335605 -181858059 - MLT1H LTR MaLR 0 549 5 346 127 0 0 chr1 100335727 100335782 -181857882 - MLT2B2 LTR ERVL 0 520 466 246 222 0 0 chr1 100335826 100335880 -181857784 - L1MC4 LINE L1 -1340 6702 6649 296 275 18 0 chr1 100335885 100335994 -181857670 + (CATA)n Simple_repeat Simple_repeat 4 114 0 233 217 0 0 chr1 100335995 100336041 -181857623 - L1MC4 LINE L1 -1339 6703 6658 1639 168 176 21 chr1 100336045 100336426 -181857238 - MLT2B2 LTR ERVL -75 440 1 382 337 44 28 chr1 100337783 100337964 -181855700 - MIR SINE MIR -59 203 20 395 197 26 0 chr1 100341378 100341454 -181852210 - AluJ/FLAM SINE Alu -224 78 1 8619 114 20 6 chr1 100341810 100343079 -181850585 + HSMAR1 DNA Mariner 1 1287 0 406 235 104 0 chr1 100344014 100344129 -181849535 + MIR SINE MIR 40 166 -96 394 312 26 63 chr1 100344418 100344607 -181849057 - MER5A DNA MER1_type -7 182 1 354 289 25 31 chr1 100346693 100346852 -181846812 + L1ME3A LINE L1 5963 6120 -50 863 237 53 0 chr1 100346869 100347076 -181846588 - MER20 DNA MER1_type 0 219 2 22 0 0 0 chr1 100348788 100348810 -181844854 + AT_rich Low_complexity Low_complexity 1 22 0 1946 162 0 7 chr1 100349084 100349386 -181844278 - AluJb SINE Alu -8 304 5 3843 163 26 20 chr1 100349901 100350589 -181843075 + L1MA2 LINE L1 20 711 -6854 26 30 0 0 chr1 100351098 100351131 -181842533 + AT_rich Low_complexity Low_complexity 1 33 0 14035 189 49 14 chr1 100351145 100351495 -181842169 + L1MA2 LINE L1 2863 3199 -4524 210 91 0 0 chr1 100351495 100351528 -181842136 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 14035 189 49 14 chr1 100351528 100355403 -181838261 + L1MA2 LINE L1 3199 7251 -472 740 174 0 0 chr1 100355403 100355520 -181838144 + L1MA2 LINE L1 7592 7723 0 21 0 0 0 chr1 100355520 100355541 -181838123 + AT_rich Low_complexity Low_complexity 1 21 0 302 275 0 70 chr1 100357035 100357150 -181836514 - MIR SINE MIR -63 145 66 188 318 129 12 chr1 100357377 100357462 -181836202 - L2 LINE L2 -20 3293 3199 1534 189 3 40 chr1 100358182 100358478 -181835186 + AluJo SINE Alu 1 285 -27 604 251 77 16 chr1 100358667 100358914 -181834750 - L1MA9 LINE L1 -38 6274 6013 * 5775 194 46 8 chr1 100358906 100359561 -181834103 - L1 LINE L1 -1062 6503 5781 1842 162 0 13 chr1 100359561 100359578 -181834086 - AluSx SINE Alu -13 299 283 273 29 0 0 chr1 100359578 100359612 -181834052 + (TG)n Simple_repeat Simple_repeat 1 34 0 1842 162 0 13 chr1 100359612 100359897 -181833767 - AluSx SINE Alu -29 283 1 5775 194 46 8 chr1 100359897 100360435 -181833229 - L1 LINE L1 -1784 5781 5265 3463 252 29 25 chr1 100360425 100362304 -181831360 - L1 LINE L1 -3233 4332 2462 * 1769 158 4 7 chr1 100362304 100362576 -181831088 + AluSx SINE Alu 5 275 -37 183 42 0 0 chr1 100362579 100362603 -181831061 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 3463 252 29 25 chr1 100362603 100362844 -181830820 - L1 LINE L1 -5104 2461 2190 502 168 0 53 chr1 100363283 100363396 -181830268 + L1PA15 LINE L1 6059 6165 0 25 31 0 0 chr1 100363405 100363437 -181830227 + AT_rich Low_complexity Low_complexity 1 32 0 393 55 0 0 chr1 100363437 100363492 -181830172 - L1PA6 LINE L1 -2 6152 6098 293 232 10 40 chr1 100363526 100363625 -181830039 + L1M LINE L1 5305 5400 -2408 2194 81 0 37 chr1 100363625 100363947 -181829717 - AluY SINE Alu -1 310 1 2304 232 61 34 chr1 100364134 100365563 -181828101 - L1ME1 LINE L1 -5 6230 4773 1383 295 76 19 chr1 100365560 100365584 -181828080 - L1ME1 LINE L1 -5689 707 686 * 207 0 0 0 chr1 100365584 100365607 -181828057 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1383 295 76 19 chr1 100365607 100366223 -181827441 - L1ME1 LINE L1 -5710 686 30 1640 250 42 14 chr1 100366654 100367301 -181826363 + L1M4 LINE L1 2758 3422 -2724 519 244 52 70 chr1 100367342 100367555 -181826109 + MER58C DNA MER1_type 4 212 -3 447 115 0 26 chr1 100367693 100367771 -181825893 - L1MA6 LINE L1 -193 6107 6032 1950 151 7 3 chr1 100367780 100368084 -181825580 - AluSx SINE Alu -7 305 1 775 261 114 44 chr1 100368451 100368792 -181824872 + MER115 DNA AcHobo 328 692 -1 422 305 48 32 chr1 100369029 100369216 -181824448 + MLT1I LTR MaLR 63 252 -157 1343 320 17 38 chr1 100369248 100369889 -181823775 + L1PA12 LINE L1 1 1404 -6170 389 273 0 36 chr1 100369984 100370094 -181823570 + L1PA12 LINE L1 2084 2189 -5392 2263 103 0 7 chr1 100370238 100370539 -181823125 + AluSg SINE Alu 2 300 -10 1010 312 28 10 chr1 100370628 100371025 -181822639 + L1PA12 LINE L1 2182 2585 -4996 * 1863 251 79 15 chr1 100371020 100371758 -181821906 + L1 LINE L1 2753 3537 -2609 751 255 77 87 chr1 100371891 100372295 -181821369 - MLT1I LTR MaLR -9 400 1 3154 212 34 30 chr1 100373011 100373878 -181819786 - L1ME1 LINE L1 -9 6157 5287 21 36 0 0 chr1 100373882 100373910 -181819754 + AT_rich Low_complexity Low_complexity 1 28 0 1139 270 84 10 chr1 100373971 100374386 -181819278 - L1MC4 LINE L1 -154 7888 7443 419 221 89 25 chr1 100374409 100374425 -181819239 - L1MA10 LINE L1 0 6334 6319 2893 213 61 16 chr1 100374425 100375196 -181818468 - L1ME1 LINE L1 -5 6161 5356 930 277 121 41 chr1 100375760 100376150 -181817514 + MLT1J2 LTR MaLR 30 450 0 261 243 15 29 chr1 100376346 100376482 -181817182 + (TTAAA)n Simple_repeat Simple_repeat 3 136 0 389 298 142 24 chr1 100377008 100377213 -181816451 - MIR SINE MIR -14 248 20 237 33 0 0 chr1 100377236 100377266 -181816398 + (TG)n Simple_repeat Simple_repeat 1 30 0 674 125 62 23 chr1 100377516 100377644 -181816020 - THE1C LTR MaLR -240 135 3 23 0 0 0 chr1 100379013 100379036 -181814628 + AT_rich Low_complexity Low_complexity 1 23 0 1556 161 88 28 chr1 100380194 100380548 -181813116 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr1 100380782 100380803 -181812861 + AT_rich Low_complexity Low_complexity 1 21 0 396 295 128 7 chr1 100383026 100383175 -181810489 + MIR SINE MIR 28 194 -68 255 265 0 29 chr1 100384554 100384656 -181809008 + CT-rich Low_complexity Low_complexity 2 100 0 2040 122 162 5 chr1 100385532 100385902 -181807762 + MSTA LTR MaLR 1 428 0 220 333 91 59 chr1 100386447 100386666 -181806998 + L2 LINE L2 2596 2821 -493 337 282 64 27 chr1 100386992 100387102 -181806562 + MIR SINE MIR 32 145 -63 382 268 89 58 chr1 100387358 100387548 -181806116 - MIR SINE MIR -65 197 2 929 244 24 53 chr1 100387672 100388012 -181805652 + L2 LINE L2 2984 3313 0 2257 92 0 0 chr1 100388186 100388481 -181805183 + AluSc SINE Alu 1 295 -14 26 0 0 0 chr1 100388557 100388583 -181805081 + AT_rich Low_complexity Low_complexity 1 26 0 406 322 168 0 chr1 100388784 100388986 -181804678 + MIR SINE MIR 2 237 -25 391 345 108 76 chr1 100389014 100389411 -181804253 + L2 LINE L2 2863 3272 0 23 33 0 0 chr1 100390978 100391008 -181802656 + AT_rich Low_complexity Low_complexity 1 30 0 502 362 85 28 chr1 100392641 100393100 -181800564 - MLT1K LTR MaLR -64 524 40 2207 117 3 0 chr1 100393745 100394043 -181799621 - AluSq SINE Alu -14 299 1 209 105 0 26 chr1 100394316 100394354 -181799310 + (GAA)n Simple_repeat Simple_repeat 2 38 0 328 277 128 0 chr1 100395119 100395213 -181798451 + MIR SINE MIR 63 168 -94 31 26 0 0 chr1 100397617 100397655 -181796009 + AT_rich Low_complexity Low_complexity 1 38 0 1488 162 84 1 chr1 100397884 100398158 -181795506 - MER1B DNA MER1_type 0 339 1 927 70 78 0 chr1 100398173 100398302 -181795362 - MER85 DNA T2_type 0 139 1 27 29 0 0 chr1 100399053 100399087 -181794577 + AT_rich Low_complexity Low_complexity 1 34 0 1065 257 29 4 chr1 100401012 100401257 -181792407 + MIR SINE MIR 2 252 -10 183 42 0 0 chr1 100402332 100402356 -181791308 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 135 0 0 chr1 100402582 100402619 -181791045 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 648 159 53 0 chr1 100403507 100403639 -181790025 + L1PA16 LINE L1 6019 6157 -9 408 283 33 0 chr1 100403662 100403782 -181789882 + MLT1I LTR MaLR 269 392 -17 623 178 8 8 chr1 100404151 100404269 -181789395 + FLAM_C SINE Alu 1 118 -15 243 298 50 25 chr1 100404371 100404492 -181789172 - MIR SINE MIR -59 203 80 366 386 74 17 chr1 100405127 100405544 -181788120 + L2 LINE L2 2226 2666 -648 2634 106 8 11 chr1 100407304 100407680 -181785984 - THE1C LTR MaLR 0 375 1 1995 128 14 0 chr1 100408721 100409017 -181784647 + AluSx SINE Alu 1 300 -12 391 225 22 185 chr1 100410510 100410786 -181782878 + MIR SINE MIR 8 238 -24 202 359 68 8 chr1 100411282 100411399 -181782265 + L2 LINE L2 3170 3293 -20 1271 271 87 56 chr1 100411423 100412321 -181781343 + L2 LINE L2 2359 3276 -37 195 42 0 0 chr1 100412446 100412470 -181781194 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 2357 109 0 0 chr1 100413680 100413984 -181779680 - AluSx SINE Alu -8 304 1 2052 98 22 32 chr1 100414153 100414469 -181779195 - AluSp SINE Alu 0 313 1 337 355 0 42 chr1 100414941 100415158 -181778506 + MIR SINE MIR 10 217 -45 789 353 76 21 chr1 100415266 100415980 -181777684 + L2 LINE L2 2355 3099 -214 29 28 0 0 chr1 100415981 100416017 -181777647 + AT_rich Low_complexity Low_complexity 1 36 0 1687 174 0 10 chr1 100416018 100416306 -181777358 - AluJb SINE Alu -26 286 2 12008 150 97 19 chr1 100416353 100418595 -181775069 + Tigger1 DNA MER2_type 2 2418 0 241 225 22 34 chr1 100418602 100418691 -181774973 + L1ME LINE L1 5347 5434 -687 1352 166 4 4 chr1 100418780 100419021 -181774643 - L1PA15 LINE L1 0 6165 5925 1002 180 5 11 chr1 100419031 100419220 -181774444 - L1PA15 LINE L1 -401 5764 5577 926 177 0 18 chr1 100419425 100419589 -181774075 + Tigger1 DNA MER2_type 2257 2417 -1 1107 176 0 42 chr1 100419677 100419938 -181773726 + pTR5 LTR ERV1 743 992 -1446 4861 236 32 104 chr1 100420038 100420476 -181773188 - L1M2a LINE L1 -5410 1758 1290 996 243 143 36 chr1 100420476 100420834 -181772830 - MSTD LTR MaLR 0 396 1 4861 236 32 104 chr1 100420834 100422177 -181771487 - L1M2a LINE L1 -5878 1290 104 282 268 14 58 chr1 100422371 100422509 -181771155 - L1MEd LINE L1 -1892 4237 4106 2169 107 0 0 chr1 100422694 100422992 -181770672 - AluSx SINE Alu -14 298 1 686 313 111 58 chr1 100423008 100423911 -181769753 - L1MEd LINE L1 -2281 3848 2898 228 133 0 0 chr1 100424081 100424126 -181769538 - LTR66 LTR ERVL -171 439 395 * 254 89 0 0 chr1 100424091 100424136 -181769528 + LTR66 LTR ERVL 394 438 -172 1767 146 8 0 chr1 100424155 100424423 -181769241 - AluSx SINE Alu -34 278 9 441 307 70 42 chr1 100424458 100424771 -181768893 - L1MEd LINE L1 -3553 2576 2255 260 27 27 0 chr1 100424813 100424850 -181768814 + (CA)n Simple_repeat Simple_repeat 2 39 0 5069 150 34 8 chr1 100424984 100426485 -181767179 + L1PA13 LINE L1 4597 6132 -31 484 228 18 0 chr1 100426586 100426700 -181766964 + Charlie1 DNA MER1_type 101 216 -2545 536 0 16 0 chr1 100426745 100426809 -181766855 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2264 118 13 65 chr1 100426822 100427006 -181766658 + THE1B LTR MaLR 1 156 -208 6792 54 19 1 chr1 100427006 100427933 -181765731 + L1PA6 LINE L1 5199 6141 -13 2264 118 13 65 chr1 100427933 100428131 -181765533 + THE1B LTR MaLR 156 363 -1 401 121 55 110 chr1 100428132 100428223 -181765441 + Charlie1 DNA MER1_type 2676 2761 0 298 289 0 0 chr1 100428777 100428860 -181764804 - HAL1 LINE L1 -834 1673 1591 390 330 80 47 chr1 100428945 100429221 -181764443 - L1MEd LINE L1 -5776 343 59 1897 133 9 48 chr1 100430659 100430975 -181762689 + AluJo SINE Alu 7 310 -2 480 378 23 5 chr1 100431120 100431337 -181762327 - MIR SINE MIR -19 243 23 750 306 69 13 chr1 100431352 100431728 -181761936 + L1MC4a LINE L1 5496 5892 -1916 647 316 110 4 chr1 100432878 100433115 -181760549 - MIR SINE MIR 0 262 1 1241 311 56 20 chr1 100433820 100434673 -181758991 + HERVL LTR ERVL 3910 4858 -906 581 255 28 95 chr1 100434678 100435035 -181758629 + HERVL LTR ERVL 5046 5378 -386 1037 287 63 6 chr1 100435077 100435567 -181758097 - L2 LINE L2 -184 3129 2613 421 221 24 154 chr1 100435913 100436186 -181757478 - MIR SINE MIR -28 234 9 1935 128 14 4 chr1 100437521 100437844 -181755820 - AluSx SINE Alu 0 326 1 442 326 67 6 chr1 100437893 100438071 -181755593 - MIR SINE MIR -54 208 20 910 254 28 5 chr1 100439168 100439381 -181754283 - MIR SINE MIR -38 224 7 420 288 85 61 chr1 100439469 100439681 -181753983 + MIR SINE MIR 2 218 -44 806 242 162 32 chr1 100440076 100440390 -181753274 + L2 LINE L2 2959 3313 0 375 323 81 8 chr1 100440388 100440512 -181753152 - MIR3 SINE MIR -66 142 10 * 1320 206 101 90 chr1 100441245 100441778 -181751886 - MLT1H LTR MaLR -3 546 8 857 324 143 23 chr1 100441785 100442738 -181750926 + L2 LINE L2 1720 2786 -528 192 337 106 48 chr1 100443301 100443418 -181750246 + L2 LINE L2 2867 2976 -337 2010 92 0 0 chr1 100443418 100443704 -181749960 - AluSc SINE Alu 0 318 33 192 337 106 48 chr1 100443704 100443962 -181749702 + L2 LINE L2 2976 3308 -5 279 150 0 0 chr1 100443980 100444020 -181749644 - MSTA LTR MaLR 0 428 389 2087 109 0 38 chr1 100444021 100444354 -181749310 + AluSg SINE Alu 1 322 0 507 235 101 7 chr1 100444411 100444560 -181749104 + MIR SINE MIR 66 228 -34 2983 146 11 38 chr1 100444832 100445211 -181748453 - L1MB3 LINE L1 -10 6173 5785 2309 112 0 0 chr1 100445211 100445516 -181748148 + AluSx SINE Alu 1 305 -7 2983 146 11 38 chr1 100445516 100445577 -181748087 - L1MB3 LINE L1 -398 5785 5747 2902 85 3 6 chr1 100445577 100445942 -181747722 + THE1B LTR MaLR 1 364 0 2983 146 11 38 chr1 100445942 100446022 -181747642 - L1MB3 LINE L1 -436 5747 5666 280 301 133 0 chr1 100446226 100446339 -181747325 - MIR SINE MIR -117 145 18 367 267 72 7 chr1 100446537 100446724 -181746940 - LTR16A LTR ERVL 0 450 216 1245 149 14 34 chr1 100446733 100446941 -181746723 - AluJo SINE Alu -23 289 86 269 192 72 120 chr1 100450777 100450814 -181742850 + MER94 DNA DNA 1 38 -96 2304 117 0 0 chr1 100450814 100451122 -181742542 - AluSx SINE Alu -4 308 1 269 192 72 120 chr1 100451122 100451209 -181742455 + MER94 DNA DNA 38 119 -15 2775 119 10 5 chr1 100451465 100451878 -181741786 - MER41B LTR ERV1 0 635 221 1117 135 0 0 chr1 100451879 100452076 -181741588 - AluSg/x SINE Alu 0 312 134 1481 144 4 0 chr1 100452076 100452305 -181741359 - MER41B LTR ERV1 -405 230 1 270 215 0 0 chr1 100452338 100452417 -181741247 + (CTA)n Simple_repeat Simple_repeat 3 81 0 273 220 0 0 chr1 100452417 100452467 -181741197 - MIR SINE MIR -2 260 211 335 244 13 0 chr1 100452552 100452630 -181741034 - MIR SINE MIR -83 179 101 574 286 76 30 chr1 100452945 100453207 -181740457 - L3 LINE CR1 -31 1546 1273 13342 113 10 47 chr1 100453481 100456308 -181737356 - L1PA10 LINE L1 -15 6153 3393 303 28 0 0 chr1 100457536 100457572 -181736092 + (TG)n Simple_repeat Simple_repeat 2 37 0 221 317 0 0 chr1 100457632 100457692 -181735972 - L2 LINE L2 -4 3309 3250 1462 136 28 0 chr1 100458208 100458421 -181735243 - MER20 DNA MER1_type 0 219 1 3297 246 99 30 chr1 100459274 100459916 -181733748 - L1M4 LINE L1 -1358 5490 4893 2378 97 0 3 chr1 100459916 100460227 -181733437 + AluSg SINE Alu 1 310 0 3297 246 99 30 chr1 100460227 100460380 -181733284 - L1M4 LINE L1 -1955 4893 4752 2042 136 3 0 chr1 100460380 100460674 -181732990 + AluSx SINE Alu 1 295 -17 3297 246 99 30 chr1 100460674 100460981 -181732683 - L1M4 LINE L1 -2096 4752 4467 2075 135 3 0 chr1 100460981 100461277 -181732387 - AluSx SINE Alu -15 297 1 3297 246 99 30 chr1 100461277 100461449 -181732215 - L1M4 LINE L1 -2381 4467 4127 1761 169 0 7 chr1 100461482 100461766 -181731898 - AluJo SINE Alu -26 286 5 635 200 27 0 chr1 100461808 100461918 -181731746 + FLAM_C SINE Alu 10 122 -21 396 0 0 0 chr1 100461918 100461962 -181731702 + (TAA)n Simple_repeat Simple_repeat 2 45 0 256 185 0 46 chr1 100461962 100462027 -181731637 + GA-rich Low_complexity Low_complexity 2 63 0 838 208 30 53 chr1 100462083 100462386 -181731278 - L1M4 LINE L1 -2778 4070 3775 1203 138 0 25 chr1 100462393 100462596 -181731068 - AluSc SINE Alu 0 309 112 2150 114 0 0 chr1 100462725 100463014 -181730650 + AluSq SINE Alu 1 289 -24 1690 224 38 20 chr1 100463033 100463321 -181730343 - L1M4 LINE L1 -3200 3648 3367 2775 103 11 0 chr1 100463321 100463672 -181729992 + THE1A LTR MaLR 1 355 0 12715 88 6 1 chr1 100463672 100465244 -181728420 + THE1A-int LTR MaLR 1 1580 0 2995 65 6 0 chr1 100465244 100465597 -181728067 + THE1A LTR MaLR 1 355 0 1690 224 38 20 chr1 100465597 100466005 -181727659 - L1M4 LINE L1 -3480 3368 2912 634 260 140 15 chr1 100466007 100466298 -181727366 - MLT1H1 LTR MaLR -7 548 186 1096 279 67 51 chr1 100466323 100466817 -181726847 + MLT1L LTR MaLR 39 540 -75 315 299 95 85 chr1 100471121 100471332 -181722332 - L1M4 LINE L1 -5825 1024 812 2267 92 10 0 chr1 100473840 100474135 -181719529 - AluSq SINE Alu -14 299 2 250 204 37 0 chr1 100474203 100474257 -181719407 + L1MC4a LINE L1 6734 6789 -1019 3280 77 11 16 chr1 100474441 100474883 -181718781 + L1PA8 LINE L1 5733 6172 0 5083 142 29 36 chr1 100474994 100475014 -181718650 - L1MB3 LINE L1 0 6183 6164 720 225 0 0 chr1 100475014 100475134 -181718530 + FLAM_A SINE Alu 2 121 -12 5083 142 29 36 chr1 100475134 100475985 -181717679 - L1MB3 LINE L1 -19 6164 5317 2331 96 0 3 chr1 100475985 100476288 -181717376 - AluSx SINE Alu -10 302 1 5083 142 29 36 chr1 100476288 100476351 -181717313 - L1MB3 LINE L1 -866 5317 5255 701 241 22 45 chr1 100476500 100476724 -181716940 + MIR SINE MIR 42 260 -2 204 171 100 86 chr1 100476997 100477067 -181716597 + MIR SINE MIR 40 110 -98 640 271 12 24 chr1 100478475 100478645 -181715019 - L2 LINE L2 -225 3088 2921 892 226 51 68 chr1 100478741 100478912 -181714752 + MER93b LTR ERV1 74 246 -127 2091 133 3 0 chr1 100478912 100479205 -181714459 - AluSg SINE Alu -16 294 1 1775 155 45 0 chr1 100479205 100479495 -181714169 - AluJb SINE Alu -3 309 6 892 226 51 68 chr1 100479495 100479647 -181714017 + MER93b LTR ERV1 244 373 0 186 350 21 21 chr1 100479653 100479750 -181713914 - L2 LINE L2 -357 2915 2819 2242 111 7 0 chr1 100479837 100480134 -181713530 + AluSg SINE Alu 1 299 -11 484 213 0 0 chr1 100480136 100480230 -181713434 - L2 LINE L2 -691 2623 2530 2771 194 57 34 chr1 100480242 100480939 -181712725 - L1ME1 LINE L1 -5 6161 5449 280 237 21 52 chr1 100480957 100481054 -181712610 + MLT1H LTR MaLR 15 143 -406 440 183 43 35 chr1 100481074 100481189 -181712475 - L1MB7 LINE L1 -16 6168 6053 1249 125 49 0 chr1 100481189 100481373 -181712291 - AluSg/x SINE Alu -9 301 109 249 289 92 33 chr1 100481579 100481839 -181711825 + L1P LINE L1 4401 4682 -1464 2186 136 0 0 chr1 100481845 100482154 -181711510 + AluSx SINE Alu 1 309 -3 221 333 147 0 chr1 100482158 100482260 -181711404 - L2 LINE L2 0 3313 3197 230 304 81 43 chr1 100482668 100483013 -181710651 + L1MDa LINE L1 577 934 -5185 390 293 115 55 chr1 100483031 100483346 -181710318 + L1MDa LINE L1 1022 1452 -1038 260 240 16 4 chr1 100483380 100483484 -181710180 + L1MDa LINE L1 1451 1598 -892 1547 269 66 31 chr1 100483616 100484213 -181709451 + L1ME3A LINE L1 5177 5812 -354 2360 83 3 7 chr1 100484213 100484515 -181709149 + AluSx SINE Alu 1 301 -11 1547 269 66 31 chr1 100484515 100484789 -181708875 + L1ME3A LINE L1 5812 6075 -91 25 75 0 0 chr1 100485844 100485897 -181707767 + AT_rich Low_complexity Low_complexity 1 53 0 665 249 85 72 chr1 100485951 100486233 -181707431 + L1ME4a LINE L1 5421 5719 -402 2252 117 0 0 chr1 100486233 100486524 -181707140 - AluSx SINE Alu -21 291 1 665 249 85 72 chr1 100486524 100486694 -181706970 + L1ME4a LINE L1 5719 5885 -236 303 260 19 39 chr1 100487341 100487445 -181706219 + L1ME4a LINE L1 5977 6078 -43 1710 157 20 20 chr1 100487459 100487752 -181705912 - AluJo SINE Alu -19 293 1 2294 78 3 3 chr1 100488040 100488336 -181705328 - AluY SINE Alu -15 296 1 479 293 48 32 chr1 100488918 100489106 -181704558 - MIR SINE MIR -71 191 1 254 326 63 11 chr1 100490227 100490322 -181703342 - L2 LINE L2 -20 3252 3153 233 167 345 12 chr1 100490373 100490457 -181703207 - MER5A DNA MER1_type 0 189 78 2688 164 24 14 chr1 100490469 100490964 -181702700 - L1MA4 LINE L1 -1 6299 5800 358 167 0 69 chr1 100491043 100491115 -181702549 - MER5A DNA MER1_type -114 75 9 2029 88 10 41 chr1 100491404 100491698 -181701966 - AluSx SINE Alu -27 285 1 237 188 45 125 chr1 100491720 100491832 -181701832 + L2 LINE L2 3168 3270 -2 488 185 22 11 chr1 100492622 100492714 -181700950 + MLT1G LTR MaLR 474 566 -24 358 116 43 0 chr1 100492730 100492799 -181700865 + L1PB4 LINE L1 6084 6155 -1 449 276 30 0 chr1 100493240 100493374 -181700290 + MIR SINE MIR 70 207 -55 317 324 142 0 chr1 100493589 100493737 -181699927 + MER117 DNA MER1_type 3 171 -26 293 289 1 0 chr1 100493912 100493992 -181699672 - MIR SINE MIR -84 124 44 356 287 114 38 chr1 100494210 100494447 -181699217 + MIR SINE MIR 4 258 -4 291 275 75 0 chr1 100496598 100496718 -181696946 - L1ME4a LINE L1 -4 6117 5989 414 234 83 36 chr1 100496768 100496960 -181696704 - L1ME4a LINE L1 -236 5885 5685 488 296 89 12 chr1 100496961 100497130 -181696534 - MER5A DNA MER1_type -1 188 7 236 240 0 0 chr1 100497132 100497182 -181696482 - L1ME4a LINE L1 -439 5682 5633 712 257 36 72 chr1 100497906 100498024 -181695640 - L1ME3A LINE L1 -11 6159 6038 2402 101 0 0 chr1 100498024 100498332 -181695332 + AluSg SINE Alu 1 308 -2 712 257 36 72 chr1 100498332 100498489 -181695175 - L1ME3A LINE L1 -132 6038 5894 632 160 160 0 chr1 100498662 100498768 -181694896 + AluJb SINE Alu 166 288 -24 459 128 0 0 chr1 100499215 100499301 -181694363 + (TA)n Simple_repeat Simple_repeat 1 86 0 2009 116 10 10 chr1 100499958 100500250 -181693414 + AluSx SINE Alu 11 302 -10 212 162 27 0 chr1 100502210 100502247 -181691417 + GA-rich Low_complexity Low_complexity 2 39 0 2251 94 19 3 chr1 100504781 100505089 -181688575 - AluSp SINE Alu 0 313 1 417 257 165 29 chr1 100505259 100505465 -181688199 - MIR SINE MIR -26 236 3 183 337 0 87 chr1 100505710 100505802 -181687862 + L2 LINE L2 3137 3220 -52 526 298 53 6 chr1 100505836 100506007 -181687657 - MIR SINE MIR -83 179 1 1805 156 0 17 chr1 100507434 100507764 -181685900 + AluJb SINE Alu 1 325 0 2166 130 0 0 chr1 100507910 100508211 -181685453 - AluSx SINE Alu -10 302 2 703 261 136 36 chr1 100509632 100509962 -181683702 + MARNA DNA Mariner 178 540 -46 196 209 143 22 chr1 100511024 100511115 -181682549 + MIR SINE MIR 64 165 -97 22 0 0 0 chr1 100512451 100512473 -181681191 + GC_rich Low_complexity Low_complexity 1 22 0 2305 91 0 19 chr1 100513354 100513663 -181680001 + AluSx SINE Alu 1 303 -9 248 227 0 0 chr1 100514301 100514345 -181679319 - MIR SINE MIR -2 260 217 425 200 25 0 chr1 100514357 100514437 -181679227 - Tigger5 DNA MER2_type 0 2323 2242 * 469 207 0 0 chr1 100514427 100514509 -181679155 + Tigger5 DNA MER2_type 2242 2323 0 339 155 0 113 chr1 100514509 100514574 -181679090 - Tigger5 DNA MER2_type -2266 57 1 486 315 111 6 chr1 100514574 100514755 -181678909 - MIR SINE MIR -58 204 5 22 56 0 0 chr1 100515609 100515645 -181678019 + AT_rich Low_complexity Low_complexity 1 36 0 2161 113 0 3 chr1 100516411 100516712 -181676952 - AluSq SINE Alu -13 300 1 22 0 0 0 chr1 100518363 100518385 -181675279 + AT_rich Low_complexity Low_complexity 1 22 0 2378 97 0 0 chr1 100519274 100519573 -181674091 + AluSq SINE Alu 1 299 -14 24 32 0 0 chr1 100519611 100519642 -181674022 + AT_rich Low_complexity Low_complexity 1 31 0 36 0 0 0 chr1 100519918 100519954 -181673710 + AT_rich Low_complexity Low_complexity 1 36 0 1347 60 6 0 chr1 100520950 100521118 -181672546 + AluY SINE Alu 129 297 -14 8464 207 140 20 chr1 100521122 100521646 -181672018 - L1M4 LINE L1 -1112 5532 5072 2377 77 7 3 chr1 100521646 100521946 -181671718 - AluY SINE Alu -10 301 1 8464 207 140 20 chr1 100521946 100523347 -181670317 - L1M4 LINE L1 -1572 5072 3227 2237 114 0 9 chr1 100523347 100523663 -181670001 - AluSq SINE Alu 0 313 1 8464 207 140 20 chr1 100523663 100524275 -181669389 - L1M4 LINE L1 -3417 3227 2690 7212 204 53 19 chr1 100524254 100526185 -181667479 - L1M4 LINE L1 -4623 2023 17 * 1049 275 106 48 chr1 100526190 100526626 -181667038 + MLT1G1 LTR MaLR 93 593 -2 3260 62 65 7 chr1 100526643 100527060 -181666604 - MLT2A1 LTR ERVL -1 443 3 574 277 33 73 chr1 100527249 100527549 -181666115 + MLT1G1-int LTR MaLR 314 601 -770 507 235 61 23 chr1 100527813 100527945 -181665719 + MLT1G1-int LTR MaLR 746 882 -489 287 259 109 105 chr1 100528176 100528470 -181665194 + MLT1G1-int LTR MaLR 1053 1347 -24 1419 253 121 33 chr1 100528485 100528986 -181664678 + MLT1G1 LTR MaLR 1 595 0 464 156 69 24 chr1 100528991 100529240 -181664424 - L1ME LINE L1 -729 5435 5127 379 274 54 81 chr1 100529249 100529472 -181664192 - MIR SINE MIR -41 221 5 295 301 65 32 chr1 100529499 100529622 -181664042 + MIR SINE MIR 58 184 -78 361 128 90 64 chr1 100530578 100530656 -181663008 - MER116 DNA Mariner 0 80 1 21 0 0 0 chr1 100530775 100530796 -181662868 + AT_rich Low_complexity Low_complexity 1 21 0 2042 125 0 26 chr1 100531387 100531690 -181661974 + AluSq SINE Alu 1 295 -18 684 151 0 9 chr1 100532372 100532478 -181661186 + MSTA LTR MaLR 1 105 -321 1145 152 22 0 chr1 100532493 100532677 -181660987 + MSTA LTR MaLR 233 420 -8 236 250 210 10 chr1 100533032 100533132 -181660532 + MIR SINE MIR 86 205 -57 2091 72 4 4 chr1 100533905 100534168 -181659496 - AluSp SINE Alu -50 263 1 719 222 71 80 chr1 100534301 100534513 -181659151 - MER63A DNA MER1_type 0 210 1 1955 130 27 3 chr1 100534526 100534818 -181658846 - AluSx SINE Alu -13 299 1 525 246 177 0 chr1 100535521 100535696 -181657968 - L3b LINE CR1 -120 1463 1258 21 0 0 0 chr1 100536186 100536207 -181657457 + AT_rich Low_complexity Low_complexity 1 21 0 6826 61 15 10 chr1 100536217 100537655 -181656009 - SVA Other Other -875 1369 4 288 0 0 0 chr1 100537772 100537804 -181655860 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 324 93 19 chr1 100537916 100538024 -181655640 - L2 LINE L2 -938 2376 2261 897 119 30 8 chr1 100539130 100539264 -181654400 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 100540878 100540904 -181652760 + (CAT)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chr1 100541962 100541997 -181651667 + AT_rich Low_complexity Low_complexity 1 35 0 260 113 151 0 chr1 100542304 100542357 -181651307 + MLT1L LTR MaLR 147 207 -408 692 268 121 5 chr1 100543284 100543508 -181650156 + MIR SINE MIR 12 261 -1 263 247 71 24 chr1 100543550 100543635 -181650029 - L2 LINE L2 -1534 1780 1692 1019 274 27 44 chr1 100543635 100544048 -181649616 - L2 LINE L2 -2160 1154 749 451 279 133 7 chr1 100544067 100544301 -181649363 + L2 LINE L2 2782 3037 -276 354 275 247 6 chr1 100544302 100544484 -181649180 - L2 LINE L2 -2617 697 472 1869 161 10 13 chr1 100544700 100545005 -181648659 + AluJo SINE Alu 1 304 -8 518 274 165 32 chr1 100546550 100546992 -181646672 + HAL1 LINE L1 1234 1734 -773 1110 210 17 0 chr1 100547066 100547299 -181646365 + L1MB5 LINE L1 5938 6174 0 785 170 97 0 chr1 100547300 100547465 -181646199 - Charlie1 DNA MER1_type -976 1785 1605 1053 92 0 14 chr1 100548287 100548429 -181645235 + FRAM SINE Alu 28 167 -9 581 320 172 9 chr1 100548469 100548788 -181644876 + HAL1 LINE L1 1128 1498 -1009 424 340 73 12 chr1 100549133 100549392 -181644272 + L1 LINE L1 4733 5007 -1139 2315 109 0 3 chr1 100549905 100550217 -181643447 + AluSx SINE Alu 1 311 -1 30 45 0 0 chr1 100550266 100550310 -181643354 + AT_rich Low_complexity Low_complexity 1 44 0 304 257 82 71 chr1 100550323 100550506 -181643158 + L1M4 LINE L1 2647 2831 -3315 365 314 67 22 chr1 100550753 100551158 -181642506 + L1M4 LINE L1 3325 3747 -2399 535 141 0 0 chr1 100551160 100551245 -181642419 - MER46B DNA MER2_type -2 234 150 1548 86 90 19 chr1 100551331 100551598 -181642066 - MER46B DNA MER2_type -75 161 1 569 332 111 35 chr1 100551629 100552081 -181641583 + L1M4 LINE L1 3784 4269 -1877 741 111 0 0 chr1 100652132 100652231 -181541433 - FLAM_C SINE Alu -38 105 7 2873 136 37 4 chr1 100652690 100653499 -181540165 - MER54A LTR ERVL 0 901 1 1755 156 0 11 chr1 100653590 100653918 -181539746 + AluJb SINE Alu 10 334 0 254 263 126 21 chr1 100654289 100654384 -181539280 + MIR SINE MIR 77 181 -81 187 200 0 0 chr1 100654382 100654417 -181539247 + L2 LINE L2 3263 3297 -16 * 1583 169 49 7 chr1 100655670 100655978 -181537686 + MLT1A1 LTR MaLR 6 326 -39 1368 280 130 20 chr1 100656375 100656996 -181536668 + L2 LINE L2 2458 3143 -170 2379 113 0 0 chr1 100656996 100657307 -181536357 - AluSq SINE Alu 0 313 3 44 0 0 0 chr1 100657400 100657444 -181536220 + AT_rich Low_complexity Low_complexity 1 44 0 845 163 64 69 chr1 100657552 100657785 -181535879 + MLT1D LTR MaLR 5 236 -269 1073 119 0 6 chr1 100657790 100657958 -181535706 + MLT1D LTR MaLR 337 503 -2 534 273 28 23 chr1 100658043 100658094 -181535570 - L1MC/D LINE L1 -2103 5705 5656 2656 112 46 7 chr1 100658094 100658506 -181535158 + MSTA LTR MaLR 1 428 0 534 273 28 23 chr1 100658506 100658630 -181535034 - L1MC/D LINE L1 -2152 5656 5529 2166 129 3 7 chr1 100659037 100659340 -181534324 + AluSx SINE Alu 1 302 -10 2112 121 16 0 chr1 100659662 100659969 -181533695 - AluSq SINE Alu -1 312 1 1011 239 70 12 chr1 100660052 100660295 -181533369 + MIR SINE MIR 6 262 0 1544 171 56 30 chr1 100660533 100660837 -181532827 - AluJb SINE Alu 0 312 1 24 32 0 0 chr1 100661210 100661241 -181532423 + AT_rich Low_complexity Low_complexity 1 31 0 781 191 7 7 chr1 100661460 100661596 -181532068 + MER5A DNA MER1_type 1 136 -53 303 122 0 0 chr1 100661601 100661650 -181532014 + (TG)n Simple_repeat Simple_repeat 2 50 0 682 178 49 12 chr1 100661655 100661818 -181531846 - L1MB7 LINE L1 -9 6175 6007 1003 173 163 5 chr1 100661840 100662153 -181531511 + MER82 DNA MER2_type 251 653 0 385 374 75 33 chr1 100662197 100662531 -181531133 - L2 LINE L2 0 3272 2925 342 324 43 75 chr1 100663705 100664078 -181529586 + L2 LINE L2 2115 2475 -839 21 0 0 0 chr1 100664189 100664210 -181529454 + AT_rich Low_complexity Low_complexity 1 21 0 1562 189 14 14 chr1 100664779 100665064 -181528600 + AluJo SINE Alu 13 297 -15 2311 101 14 0 chr1 100665068 100665365 -181528299 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr1 100665665 100665693 -181527971 + AT_rich Low_complexity Low_complexity 1 28 0 1247 171 5 9 chr1 100666670 100666881 -181526783 - AluJo SINE Alu -102 210 1 623 269 172 43 chr1 100666952 100667301 -181526363 - L2 LINE L2 -1 3312 2919 507 221 98 8 chr1 100668829 100668951 -181524713 - L2 LINE L2 0 3313 3181 1024 108 29 0 chr1 100669302 100669441 -181524223 - AluSq/x SINE Alu -169 143 1 356 270 140 41 chr1 100669668 100669954 -181523710 - L2 LINE L2 -47 3266 2079 265 352 151 20 chr1 100670221 100670420 -181523244 + L2 LINE L2 3047 3271 -1 2268 88 7 0 chr1 100670567 100670861 -181522803 + AluSq SINE Alu 1 296 -17 947 262 31 19 chr1 100671054 100671378 -181522286 + L1ME3 LINE L1 5834 6161 -1 22 0 0 73 chr1 100671748 100671789 -181521875 + AT_rich Low_complexity Low_complexity 1 38 0 30 27 0 0 chr1 100672621 100672658 -181521006 + AT_rich Low_complexity Low_complexity 1 37 0 317 270 90 0 chr1 100672861 100672950 -181520714 - MER58A DNA MER1_type -10 97 1 2069 216 86 63 chr1 100672950 100673865 -181519799 - L1M4 LINE L1 -1566 4580 3645 248 122 0 0 chr1 100673866 100673907 -181519757 + L1M4 LINE L1 3628 3668 -2478 1148 269 27 0 chr1 100674174 100674575 -181519089 - L1M4 LINE L1 -2573 3573 3162 301 311 33 0 chr1 100675839 100675929 -181517735 + L2 LINE L2 3184 3276 -37 1427 196 36 53 chr1 100676355 100676656 -181517008 - AluJb SINE Alu -16 296 1 648 178 48 154 chr1 100676935 100677228 -181516436 - MIR SINE MIR 0 262 1 625 241 47 30 chr1 100678150 100678382 -181515282 - MER106A DNA MER1_type 0 236 1 221 326 14 64 chr1 100678401 100678542 -181515122 + L2 LINE L2 2957 3090 -182 1302 143 0 5 chr1 100678556 100678780 -181514884 - MER6 DNA MER2_type 0 865 643 * 1752 138 93 0 chr1 100678775 100679086 -181514578 - MLT2D LTR ERVL -56 358 19 182 229 66 82 chr1 100679091 100679152 -181514512 + L2 LINE L2 3250 3309 -4 1060 261 89 3 chr1 100679208 100679522 -181514142 - MLT1I LTR MaLR -2 407 67 2133 191 53 13 chr1 100679602 100680051 -181513613 + MLT1C LTR MaLR 1 467 0 907 95 16 0 chr1 100681169 100681295 -181512369 - AluSg/x SINE Alu -6 306 179 1668 75 136 288 chr1 100681300 100681985 -181511679 + LTR12 LTR ERV1 1 581 -133 1295 97 0 0 chr1 100681985 100682150 -181511514 - AluY SINE Alu -146 165 1 5682 108 72 51 chr1 100682373 100682452 -181511212 + Tigger3b DNA MER2_type 2 78 -2950 2127 126 3 0 chr1 100682452 100682746 -181510918 + AluSx SINE Alu 1 295 -17 5682 108 72 51 chr1 100682746 100682776 -181510888 + Tigger3b DNA MER2_type 78 106 -2922 2343 86 0 0 chr1 100682776 100683068 -181510596 + AluSg SINE Alu 1 292 -18 5682 108 72 51 chr1 100683068 100683720 -181509944 + Tigger3b DNA MER2_type 106 797 -2231 1636 129 21 104 chr1 100683720 100683905 -181509759 - AluYb8 SINE Alu -18 300 152 2330 96 0 0 chr1 100683905 100684197 -181509467 - AluSq SINE Alu -17 296 5 1636 129 21 104 chr1 100684197 100684337 -181509327 - AluYb8 SINE Alu -166 152 2 5682 108 72 51 chr1 100684337 100684706 -181508958 + Tigger3b DNA MER2_type 797 1157 -74 333 158 37 0 chr1 100684749 100684831 -181508833 + (TA)n Simple_repeat Simple_repeat 2 86 0 1402 148 33 73 chr1 100685048 100685208 -181508456 - AluJo SINE Alu -20 292 148 1755 149 7 50 chr1 100685208 100685510 -181508154 - AluJb SINE Alu -23 289 1 1402 148 33 73 chr1 100685510 100685652 -181508012 - AluJo SINE Alu -164 148 2 2993 195 84 19 chr1 100686119 100687023 -181506641 + L1ME1 LINE L1 5205 6332 -2 1965 121 16 7 chr1 100690903 100691208 -181502456 - AluSx SINE Alu -4 308 1 1006 193 137 24 chr1 100691366 100691745 -181501919 + LTR37A LTR ERV1 5 426 0 374 350 42 18 chr1 100692226 100692443 -181501221 + MIR SINE MIR 14 235 -27 2066 129 0 0 chr1 100692597 100692891 -181500773 + AluSq SINE Alu 1 294 -19 201 39 0 0 chr1 100692891 100692917 -181500747 + (GA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr1 100693010 100693031 -181500633 + AT_rich Low_complexity Low_complexity 1 21 0 725 56 0 0 chr1 100693042 100693131 -181500533 + AluY SINE Alu 1 89 -222 968 145 50 6 chr1 100693131 100693290 -181500374 - AluJo SINE Alu -146 166 1 333 162 78 0 chr1 100693649 100693729 -181499935 + L1M4 LINE L1 5550 5645 -519 276 311 129 23 chr1 100693782 100693914 -181499750 + MER5B DNA MER1_type 1 146 -32 241 148 131 0 chr1 100694173 100694234 -181499430 + MER116 DNA Mariner 1 69 -11 313 315 40 22 chr1 100694358 100694634 -181499030 - L1MC5 LINE L1 -178 7783 7503 217 247 10 93 chr1 100694705 100694802 -181498862 + MIR SINE MIR 168 256 -6 283 282 169 0 chr1 100695939 100696063 -181497601 + L1M4 LINE L1 3740 3884 -2262 300 357 41 18 chr1 100696158 100696329 -181497335 - L2 LINE L2 -2951 363 189 403 321 267 20 chr1 100696579 100697393 -181496271 + L2 LINE L2 1177 2191 -1123 261 337 124 51 chr1 100697806 100698079 -181495585 + L3 LINE CR1 645 937 -640 2496 31 0 0 chr1 100698673 100698963 -181494701 - AluY SINE Alu -8 303 14 28 0 0 0 chr1 100699249 100699277 -181494387 + GC_rich Low_complexity Low_complexity 1 28 0 389 222 46 0 chr1 100700541 100700649 -181493015 - MER90 LTR ERV1 -237 338 226 * 852 217 62 56 chr1 100700640 100700944 -181492720 - MER90 LTR ERV1 -269 306 1 556 256 186 16 chr1 100700990 100701232 -181492432 - L2 LINE L2 -103 3210 2928 2328 102 0 19 chr1 100701280 100701594 -181492070 + AluSg SINE Alu 1 308 -2 842 178 115 0 chr1 100701827 100702001 -181491663 + MIR SINE MIR 4 197 -65 876 262 55 52 chr1 100702196 100702597 -181491067 + MLT1J LTR MaLR 52 453 -58 3727 246 29 8 chr1 100703309 100704308 -181489356 + L1P LINE L1 2675 3703 -2443 2321 66 3 3 chr1 100704308 100704610 -181489054 + AluY SINE Alu 1 302 -9 3727 246 29 8 chr1 100704610 100704758 -181488906 + L1P LINE L1 3703 3846 -2300 1503 144 0 93 chr1 100704756 100705104 -181488560 + L1P5 LINE L1 5420 5730 -424 * 553 227 39 54 chr1 100705363 100705566 -181488098 - L2 LINE L2 -1 3312 3113 806 113 0 0 chr1 100705678 100705784 -181487880 + FLAM_C SINE Alu 1 106 -37 252 0 0 0 chr1 100705794 100705822 -181487842 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1025 155 0 18 chr1 100705898 100706066 -181487598 - FRAM SINE Alu -12 164 1 668 197 8 0 chr1 100706112 100706239 -181487425 - FLAM_A SINE Alu -2 131 4 467 184 0 10 chr1 100706247 100706350 -181487314 + CT-rich Low_complexity Low_complexity 3 104 0 2992 240 31 31 chr1 100706880 100707933 -181485731 - L1M4 LINE L1 -1682 5180 4128 350 241 107 0 chr1 100708395 100708506 -181485158 + L1MC5 LINE L1 6769 6891 -917 188 260 70 110 chr1 100708573 100708673 -181484991 - MER5A DNA MER1_type -59 130 35 * 292 219 86 67 chr1 100708590 100708695 -181484969 + MER5A DNA MER1_type 83 189 0 10370 181 92 10 chr1 100708844 100711465 -181482199 - L1PBa LINE L1 -2788 4074 1066 1525 215 57 41 chr1 100711465 100711675 -181481989 + LTR2 LTR ERV1 1 206 -243 180 111 0 0 chr1 100711675 100711702 -181481962 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1525 215 57 41 chr1 100711702 100711933 -181481731 + LTR2 LTR ERV1 206 449 0 10370 181 92 10 chr1 100711933 100712961 -181480703 - L1PBa LINE L1 -5796 1066 124 807 218 109 0 chr1 100713099 100713301 -181480363 + MER58A DNA MER1_type 1 224 0 365 318 104 7 chr1 100715249 100715403 -181478261 + MIR SINE MIR 63 231 -31 36 23 0 0 chr1 100716005 100716048 -181477616 + AT_rich Low_complexity Low_complexity 1 43 0 280 216 166 29 chr1 100716588 100716727 -181476937 + MLT1K LTR MaLR 420 577 -11 2443 78 0 0 chr1 100716823 100717118 -181476546 - AluSc SINE Alu -14 295 1 1636 164 34 0 chr1 100717137 100717406 -181476258 - AluJb SINE Alu -31 281 4 339 281 3 11 chr1 100718836 100718926 -181474738 + MER5A DNA MER1_type 27 113 -65 189 331 93 58 chr1 100718944 100719116 -181474548 + L2 LINE L2 3134 3311 -2 725 217 59 30 chr1 100719161 100719364 -181474300 + MER3 DNA MER1_type 1 209 0 1968 131 0 0 chr1 100719568 100719836 -181473828 - AluSx SINE Alu -44 268 1 792 244 6 0 chr1 100720165 100720345 -181473319 - MER58A DNA MER1_type -17 207 27 949 73 0 8 chr1 100722341 100722465 -181471199 + AluSg/x SINE Alu 182 304 -8 3950 214 84 28 chr1 100722480 100722924 -181470740 + L1MB3 LINE L1 3975 4393 -1790 1933 107 13 57 chr1 100722924 100723242 -181470422 + AluSc SINE Alu 1 304 -5 3950 214 84 28 chr1 100723242 100723286 -181470378 + L1MB3 LINE L1 4393 4433 -1750 1769 178 28 0 chr1 100723286 100723573 -181470091 - AluJb SINE Alu -17 295 1 3950 214 84 28 chr1 100723573 100724495 -181469169 + L1MB3 LINE L1 4433 5302 -881 2106 128 0 0 chr1 100724495 100724791 -181468873 + AluSx SINE Alu 1 296 -16 6899 50 48 0 chr1 100724801 100725657 -181468007 + MER11D LTR ERVK 1 897 0 3950 214 84 28 chr1 100725657 100725982 -181467682 + L1MB3 LINE L1 5310 5615 -568 2147 111 30 0 chr1 100725982 100726280 -181467384 - AluSp SINE Alu -6 307 1 3950 214 84 28 chr1 100726280 100726626 -181467038 + L1MB3 LINE L1 5615 6175 -8 1511 158 8 0 chr1 100726714 100726948 -181466716 + AluJb SINE Alu 59 294 -18 666 78 9 70 chr1 100726948 100727063 -181466601 - HY1 scRNA scRNA -3 109 2 550 245 40 20 chr1 100727839 100727990 -181465674 - L1M4b LINE L1 -6700 159 6 745 174 0 7 chr1 100728000 100728138 -181465526 - MER69 DNA AcHobo -1088 138 2 318 148 0 0 chr1 100728190 100728244 -181465420 + (CA)n Simple_repeat Simple_repeat 2 55 0 233 262 0 16 chr1 100728416 100728477 -181465187 + GA-rich Low_complexity Low_complexity 2 61 0 402 21 0 0 chr1 100728487 100728534 -181465130 + (GA)n Simple_repeat Simple_repeat 1 47 0 323 264 212 31 chr1 100729953 100730146 -181463518 - MIR SINE MIR -33 229 2 2002 131 0 26 chr1 100730528 100730834 -181462830 - AluSx SINE Alu -14 298 1 1747 286 39 2 chr1 100730893 100731379 -181462285 + L1M4b LINE L1 97 600 -6259 505 273 0 0 chr1 100731382 100731503 -181462161 + L1M4b LINE L1 665 785 -6074 512 352 22 41 chr1 100731504 100731819 -181461845 + L1M4b LINE L1 2407 2715 -4423 428 299 48 53 chr1 100731962 100732169 -181461495 + L1M4b LINE L1 2619 2824 -4314 2175 249 46 23 chr1 100732171 100732391 -181461273 + L1M4b LINE L1 3852 4066 -2891 210 71 0 0 chr1 100732391 100732419 -181461245 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 2175 249 46 23 chr1 100732419 100732649 -181461015 + L1M4b LINE L1 4066 4289 -2668 1778 139 121 12 chr1 100732649 100732987 -181460677 - THE1C LTR MaLR 0 375 1 2175 249 46 23 chr1 100732987 100733474 -181460190 + L1M4b LINE L1 4289 4811 -2146 734 200 154 0 chr1 100733486 100733706 -181459958 - L1MC4 LINE L1 -1 8041 7788 2555 83 24 19 chr1 100733763 100734135 -181459529 - L1PA11 LINE L1 0 6174 5801 29565 81 7 10 chr1 100735224 100741383 -181452281 - L1PA6 LINE L1 -6 6148 11 955 303 61 24 chr1 100742092 100742504 -181451160 + L2 LINE L2 2887 3313 0 30 77 0 0 chr1 100742740 100742805 -181450859 + AT_rich Low_complexity Low_complexity 1 65 0 3703 40 2 0 chr1 100742805 100743254 -181450410 - L1PA3 LINE L1 -2 6153 5704 299 292 23 31 chr1 100743317 100743447 -181450217 - MIR SINE MIR -10 252 124 2025 124 45 0 chr1 100743471 100743761 -181449903 - AluSx SINE Alu -9 303 1 327 327 117 12 chr1 100744682 100744844 -181448820 - L2 LINE L2 -27 3245 3067 684 176 14 0 chr1 100744967 100745109 -181448555 + L1 LINE L1 4781 4924 -1222 391 246 25 0 chr1 100745114 100745232 -181448432 + L1 LINE L1 5024 5144 -1002 462 143 0 14 chr1 100745240 100745310 -181448354 - AluJ/FLAM SINE Alu -243 69 1 1229 33 0 7 chr1 100745370 100745521 -181448143 - L1PA10 LINE L1 -1 6167 6018 1020 50 0 0 chr1 100746091 100746211 -181447453 - AluSp/q SINE Alu -19 294 175 1354 197 80 0 chr1 100746847 100747265 -181446399 - AluJb SINE Alu 0 441 1 1941 82 39 4 chr1 100747381 100747661 -181446003 + L1PA13 LINE L1 5856 6145 -18 248 250 12 0 chr1 100747668 100747748 -181445916 + GA-rich Low_complexity Low_complexity 4 84 0 1306 262 89 57 chr1 100747898 100748206 -181445458 + L1ME3A LINE L1 5428 5725 -445 1854 164 3 14 chr1 100748206 100748499 -181445165 + AluSx SINE Alu 1 290 -22 1306 262 89 57 chr1 100748499 100748896 -181444768 + L1ME3A LINE L1 5725 6156 -14 447 273 38 6 chr1 100748920 100749103 -181444561 + L1ME3A LINE L1 4409 4597 -1549 227 251 29 74 chr1 100749135 100749175 -181444489 + L1ME3A LINE L1 4881 4921 -1225 8383 174 38 66 chr1 100749175 100750980 -181442684 - MER52A LTR ERV1 0 1755 1 227 251 29 74 chr1 100750980 100751114 -181442550 + L1ME3A LINE L1 4921 5047 -1099 752 270 47 39 chr1 100751311 100751693 -181441971 + L1ME3A LINE L1 5264 5648 -516 351 281 7 0 chr1 100751713 100751848 -181441816 + L1ME3A LINE L1 5837 5972 -198 666 286 62 40 chr1 100751857 100752179 -181441485 - MLT1E LTR MaLR 0 593 265 254 219 0 10 chr1 100752224 100752320 -181441344 + GA-rich Low_complexity Low_complexity 1 95 0 1188 309 192 11 chr1 100752553 100753203 -181440461 - L2 LINE L2 -641 2673 1906 729 277 94 87 chr1 100753232 100753701 -181439963 - L2 LINE L2 -2450 864 393 230 310 50 0 chr1 100753731 100753831 -181439833 + MIR SINE MIR 109 213 -49 1617 179 0 44 chr1 100754009 100754328 -181439336 - AluJo SINE Alu -7 305 1 363 290 13 7 chr1 100755145 100755300 -181438364 + MER70-int LTR ERVL 4516 4671 -352 2233 112 3 0 chr1 100755534 100755846 -181437818 - AluSp SINE Alu 0 313 1 1438 177 90 22 chr1 100756131 100756453 -181437211 + MER101 LTR ERV1 24 367 -107 1066 209 45 32 chr1 100756687 100757122 -181436542 + LTR45B LTR ERV1 12 488 -1 990 253 153 43 chr1 100757124 100757751 -181435913 + L1M2 LINE L1 376 1377 -5832 2470 57 0 0 chr1 100757847 100758143 -181435521 - AluY SINE Alu -15 296 1 874 218 73 5 chr1 100758722 100758928 -181434736 + MER58A DNA MER1_type 1 220 -4 302 181 14 28 chr1 100760263 100760335 -181433329 - LTR18B LTR ERVL -542 72 2 230 279 117 27 chr1 100760686 100760797 -181432867 + MIR SINE MIR 62 182 -80 2221 78 18 3 chr1 100760810 100761094 -181432570 - AluY SINE Alu -19 292 5 228 254 159 14 chr1 100762317 100762455 -181431209 + MLT1K LTR MaLR 420 577 -11 356 289 24 0 chr1 100763925 100764008 -181429656 + MER5A DNA MER1_type 21 105 -84 222 319 165 0 chr1 100764128 100764219 -181429445 + L2 LINE L2 3206 3311 -2 469 262 59 25 chr1 100764264 100764466 -181429198 + MER3 DNA MER1_type 1 209 0 978 214 0 37 chr1 100764977 100765192 -181428472 - MER58A DNA MER1_type -17 207 1 255 61 0 0 chr1 100766220 100766253 -181427411 + (T)n Simple_repeat Simple_repeat 1 33 0 285 337 66 33 chr1 100766541 100766722 -181426942 - MIR SINE MIR -61 201 15 4072 221 47 9 chr1 100767207 100769365 -181424299 + L1MB3 LINE L1 3941 6181 -2 335 295 47 23 chr1 100770375 100770504 -181423160 - L1M4b LINE L1 -6718 141 10 635 188 0 8 chr1 100770518 100770646 -181423018 - MER69 DNA AcHobo -1088 138 12 211 263 0 18 chr1 100770834 100770891 -181422773 + GA-rich Low_complexity Low_complexity 3 58 0 378 0 0 0 chr1 100770898 100770940 -181422724 + (TG)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr1 100770939 100770974 -181422690 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 239 256 231 31 chr1 100772430 100772625 -181421039 - MIR SINE MIR -27 235 2 28 48 0 0 chr1 100772651 100772693 -181420971 + AT_rich Low_complexity Low_complexity 1 42 0 680 205 0 0 chr1 100772856 100772978 -181420686 - AluJb SINE Alu -190 122 1 2401 97 6 0 chr1 100773006 100773317 -181420347 - AluSp SINE Alu 0 313 1 1163 260 35 30 chr1 100773527 100773564 -181420100 + L1M4b LINE L1 97 132 -6727 8388 47 8 0 chr1 100773564 100774522 -181419142 - LTR5 LTR ERVK -3 966 1 1163 260 35 30 chr1 100774522 100774857 -181418807 + L1M4b LINE L1 132 471 -6388 1539 182 66 31 chr1 100774859 100775466 -181418198 - LTR8 LTR ERV1 -2 689 1 582 133 17 75 chr1 100775606 100775726 -181417938 + L1M4b LINE L1 672 784 -6075 429 263 30 83 chr1 100775740 100776040 -181417624 + L1M4b LINE L1 2418 2701 -4437 887 224 11 83 chr1 100776385 100776831 -181416833 + L1M4b LINE L1 3851 4264 -2693 316 288 54 36 chr1 100777352 100777463 -181416201 - L2 LINE L2 -35 3237 3125 2103 200 91 7 chr1 100777722 100778293 -181415371 + L1MA5 LINE L1 4783 5401 -745 27364 120 22 25 chr1 100778302 100784687 -181408977 + L1PA8 LINE L1 6 6467 -20 3675 153 47 10 chr1 100784685 100784947 -181408717 + L1MA5 LINE L1 5397 5648 -652 * 1057 160 10 19 chr1 100784947 100785147 -181408517 + L1PA15 LINE L1 5959 6162 -3 3675 153 47 10 chr1 100785147 100785657 -181408007 + L1MA5 LINE L1 5648 6197 -103 648 144 0 0 chr1 100786102 100786213 -181407451 + L1MA5 LINE L1 6189 6299 -1 6312 112 35 14 chr1 100786387 100787422 -181406242 + MER11C LTR ERVK 1 1057 -14 635 181 24 0 chr1 100787719 100787846 -181405818 - L1MB2 LINE L1 -21 6150 6021 566 293 122 28 chr1 100789163 100789555 -181404109 + L1ME3A LINE L1 5726 6154 -8 332 222 134 23 chr1 100789570 100789741 -181403923 + L1ME3A LINE L1 4403 4592 -1554 290 307 75 30 chr1 100789779 100790111 -181403553 + L1ME3A LINE L1 4882 5228 -918 709 263 33 51 chr1 100790153 100790488 -181403176 + L1ME3A LINE L1 5317 5645 -525 266 236 27 36 chr1 100790539 100790623 -181403041 + L1ME3A LINE L1 5864 5952 -218 2057 118 0 4 chr1 100790623 100790906 -181402758 + AluSg SINE Alu 1 326 0 245 68 23 23 chr1 100790906 100790950 -181402714 + (CAA)n Simple_repeat Simple_repeat 2 180 0 266 236 27 36 chr1 100790950 100790971 -181402693 + L1ME3A LINE L1 5952 5972 -198 347 247 22 11 chr1 100791076 100791165 -181402499 - L2 LINE L2 -1317 1997 1908 642 282 93 93 chr1 100791165 100791672 -181401992 - L2 LINE L2 -2418 896 390 255 293 181 0 chr1 100791690 100791823 -181401841 + MIR SINE MIR 62 218 -44 2191 160 18 12 chr1 100792079 100792480 -181401184 + L1PA15 LINE L1 5763 6165 0 194 388 16 41 chr1 100792571 100792692 -181400972 - L2 LINE L2 -2804 510 393 7203 158 27 9 chr1 100792988 100794315 -181399349 - HERVK LTR ERVK -530 5852 3538 6704 105 4 6 chr1 100794354 100795325 -181398339 - HERVK LTR ERVK -1782 5461 4493 951 148 19 0 chr1 100795306 100795468 -181398196 + HERVKC4 LTR ERVK 3573 3737 -1525 * 1364 138 14 0 chr1 100795469 100795686 -181397978 - L1P3 LINE L1 -6232 229 10 998 144 6 0 chr1 100796341 100796522 -181397142 - L1MA4 LINE L1 0 6300 6119 198 326 35 0 chr1 100797090 100797176 -181396488 - MIR SINE MIR -126 136 48 23 33 0 0 chr1 100797336 100797366 -181396298 + AT_rich Low_complexity Low_complexity 1 30 0 777 60 0 0 chr1 100797899 100797999 -181395665 - L1PA8 LINE L1 -4 6168 6069 1414 30 0 0 chr1 100797999 100798168 -181395496 - L1P3 LINE L1 -370 5802 5634 1538 258 105 47 chr1 100798205 100798474 -181395190 + L1M4c LINE L1 34 286 -6027 2680 35 0 0 chr1 100798474 100798785 -181394879 - AluY SINE Alu 0 311 1 1538 258 105 47 chr1 100798785 100799354 -181394310 + L1M4c LINE L1 286 790 -5523 313 282 86 20 chr1 100799471 100799716 -181393948 + L1M4c LINE L1 2053 2313 -4069 1464 151 18 97 chr1 100799723 100799815 -181393849 + Tigger2 DNA MER2_type 2413 2511 -207 1492 208 18 4 chr1 100799815 100800089 -181393575 - AluJo SINE Alu -30 282 5 1464 151 18 97 chr1 100800089 100800327 -181393337 + Tigger2 DNA MER2_type 2511 2717 -1 11995 193 24 36 chr1 100800327 100802244 -181391420 + L1MA7 LINE L1 2685 4531 -1996 207 114 0 0 chr1 100802244 100802279 -181391385 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 11995 193 24 36 chr1 100802279 100804251 -181389413 + L1MA7 LINE L1 4531 6525 -2 358 285 112 64 chr1 100804331 100804483 -181389181 - L1M4 LINE L1 -1293 4853 4710 2240 109 42 28 chr1 100804483 100804842 -181388822 + THE1B LTR MaLR 1 364 0 358 285 112 64 chr1 100804842 100805127 -181388537 - L1M4 LINE L1 -1436 4710 4395 752 264 35 35 chr1 100805399 100805653 -181388011 + MER89-int LTR ERV1 446 699 -6102 1179 177 35 17 chr1 100805670 100805902 -181387762 - LTR58 LTR ERV1 0 679 444 1008 223 49 64 chr1 100805939 100806285 -181387379 + MER89-int LTR ERV1 819 1159 -5642 455 153 0 0 chr1 100806355 100806427 -181387237 + LTR44 LTR ERV1 25 96 -423 852 173 32 54 chr1 100806428 100806613 -181387051 + LTR44 LTR ERV1 339 519 0 757 237 28 23 chr1 100806613 100806790 -181386874 + MER89-int LTR ERV1 1180 1357 -5444 1016 236 66 32 chr1 100806791 100807138 -181386526 + MLT1A2 LTR MaLR 1 359 -15 1702 148 35 38 chr1 100807141 100807485 -181386179 - MER61A LTR ERV1 0 343 1 4082 203 40 73 chr1 100807513 100808623 -181385041 + MER89-int LTR ERV1 1355 2428 -4373 2003 144 3 0 chr1 100809456 100809748 -181383916 + AluSx SINE Alu 1 293 -19 239 0 32 0 chr1 100809748 100809779 -181383885 + (TA)n Simple_repeat Simple_repeat 2 33 0 264 263 42 85 chr1 100809782 100809900 -181383764 - MIR SINE MIR -17 245 133 2383 48 14 3 chr1 100810045 100810335 -181383329 + AluY SINE Alu 1 293 -18 245 350 68 19 chr1 100813517 100813620 -181380044 + LTR67 LTR ERVL 58 165 -392 2264 100 3 0 chr1 100815750 100816049 -181377615 - AluSp SINE Alu -13 300 1 186 264 124 33 chr1 100816186 100816307 -181377357 + MIR SINE MIR 97 228 -34 3192 78 46 65 chr1 100817169 100817708 -181375956 + L1PB1 LINE L1 5620 6148 -3 1838 184 9 0 chr1 100817725 100818067 -181375597 + L1 LINE L1 3704 4048 -2098 1565 100 14 93 chr1 100818203 100818492 -181375172 + L1MA2 LINE L1 6025 6290 -14 388 232 89 27 chr1 100818536 100818648 -181375016 + MIR SINE MIR 144 262 0 345 204 58 48 chr1 100818695 100818798 -181374866 + L2 LINE L2 3210 3313 0 292 305 152 33 chr1 100819539 100819749 -181373915 + MIR SINE MIR 13 247 -15 24 0 0 0 chr1 100820129 100820153 -181373511 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 100821190 100821211 -181372453 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 38 0 chr1 100821294 100821400 -181372264 - MER81 DNA DNA 0 114 5 629 361 48 47 chr1 100821423 100822154 -181371510 + L2 LINE L2 2169 2900 -414 1401 206 4 29 chr1 100822167 100822448 -181371216 - AluJo SINE Alu -28 284 11 24 0 0 0 chr1 100822557 100822581 -181371083 + AT_rich Low_complexity Low_complexity 1 24 0 1738 166 0 3 chr1 100822582 100822865 -181370799 - AluJb SINE Alu -30 282 1 1546 296 77 94 chr1 100824373 100825872 -181367792 - L2 LINE L2 0 3313 1839 969 302 150 38 chr1 100825876 100826529 -181367135 - L2 LINE L2 -2487 827 102 212 300 122 11 chr1 100826825 100826915 -181366749 + MIR SINE MIR 41 140 -122 26 30 0 0 chr1 100827461 100827494 -181366170 + AT_rich Low_complexity Low_complexity 1 33 0 5916 219 84 80 chr1 100828637 100830898 -181362766 - L1MC4a LINE L1 -2 7806 5535 21 0 0 0 chr1 100833028 100833049 -181360615 + AT_rich Low_complexity Low_complexity 1 21 0 1208 223 89 0 chr1 100833139 100833295 -181360369 - AluJo SINE Alu -5 297 156 231 114 0 0 chr1 100833295 100833330 -181360334 + (TG)n Simple_repeat Simple_repeat 1 35 0 1208 223 89 0 chr1 100833330 100833442 -181360222 - AluJo SINE Alu -146 156 5 4744 140 100 131 chr1 100833566 100835154 -181358510 - pTR5 LTR ERV1 0 2438 743 227 287 88 44 chr1 100835205 100835341 -181358323 - MIR SINE MIR -21 241 100 207 0 0 0 chr1 100835499 100835522 -181358142 + (TG)n Simple_repeat Simple_repeat 1 23 0 233 331 109 3 chr1 100837218 100837365 -181356299 + MIR SINE MIR 30 191 -68 769 289 83 37 chr1 100837611 100838119 -181355545 - L1MC4a LINE L1 -1904 5904 5374 2902 279 32 36 chr1 100839832 100840969 -181352695 + L1PA15 LINE L1 5 1570 -5217 15469 231 27 16 chr1 100841143 100844898 -181348766 + L1PA15 LINE L1 1628 5453 -1344 189 0 0 0 chr1 100844898 100844919 -181348745 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 15469 231 27 16 chr1 100844919 100845522 -181348142 + L1PA15 LINE L1 5453 6048 -749 6451 114 8 24 chr1 100845524 100846914 -181346750 + L1PA4 LINE L1 4781 6155 0 4731 135 9 1 chr1 100846926 100847673 -181345991 + L1PA15 LINE L1 6064 6816 0 22 0 0 0 chr1 100848535 100848557 -181345107 + AT_rich Low_complexity Low_complexity 1 22 0 1276 209 45 14 chr1 100848719 100849006 -181344658 - AluJo SINE Alu -16 296 1 316 100 80 0 chr1 100849267 100849317 -181344347 - MSTA LTR MaLR 0 428 375 1041 270 97 8 chr1 100849323 100849664 -181344000 - L1ME3A LINE L1 -325 5845 5474 217 274 78 0 chr1 100849674 100849725 -181343939 - MIR SINE MIR -60 148 94 25 31 0 0 chr1 100849969 100850001 -181343663 + AT_rich Low_complexity Low_complexity 1 32 0 1734 164 114 12 chr1 100850006 100850347 -181343317 - MSTA LTR MaLR -45 383 8 3888 154 9 14 chr1 100850356 100851024 -181342640 - L1PA16 LINE L1 -33 6133 5469 2997 172 24 66 chr1 100851044 100851408 -181342256 - L1MA9 LINE L1 -1 6311 5990 2349 98 0 0 chr1 100851408 100851705 -181341959 - AluSc SINE Alu -12 297 1 2997 172 24 66 chr1 100851705 100852048 -181341616 - L1MA9 LINE L1 -322 5990 5634 * 4013 185 50 38 chr1 100852047 100853357 -181340307 + L1M2 LINE L1 4249 5597 -715 335 320 74 23 chr1 100853405 100853580 -181340084 + MIR SINE MIR 62 245 -17 285 296 96 52 chr1 100854326 100854441 -181339223 + MIR3 SINE MIR 5 124 -84 295 252 178 0 chr1 100854812 100854919 -181338745 + MLT1E2 LTR MaLR 16 141 -513 449 213 115 25 chr1 100854994 100855116 -181338548 + MLT1E2 LTR MaLR 160 292 -334 423 297 8 0 chr1 100855117 100855235 -181338429 + MLT1E2 LTR MaLR 435 553 -73 21 0 0 0 chr1 100855285 100855306 -181338358 + AT_rich Low_complexity Low_complexity 1 21 0 564 173 137 7 chr1 100855376 100855515 -181338149 - L1MA8 LINE L1 -66 6225 6069 371 338 91 0 chr1 100856370 100856524 -181337140 - MER45A DNA AcHobo -10 168 1 1538 233 19 12 chr1 100857387 100857799 -181335865 - L1MA9 LINE L1 -33 6279 5865 1725 196 73 2 chr1 100859245 100859643 -181334021 + MER95 LTR ERV 6 431 0 237 231 0 0 chr1 100859682 100859734 -181333930 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 1974 155 24 0 chr1 100860803 100861099 -181332565 - AluSx SINE Alu -9 303 1 243 0 0 0 chr1 100861157 100861184 -181332480 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 29 0 0 0 chr1 100861244 100861273 -181332391 + AT_rich Low_complexity Low_complexity 1 29 0 36095 67 3 4 chr1 100861275 100866826 -181326838 + L1PA5 LINE L1 606 6149 -5 1001 233 38 0 chr1 100866878 100867114 -181326550 + MIR SINE MIR 8 252 -10 11138 138 27 15 chr1 100867278 100870088 -181323576 - L1PA13 LINE L1 -44 6119 3275 198 103 0 0 chr1 100870285 100870314 -181323350 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2149 129 0 0 chr1 100870316 100870627 -181323037 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 100870953 100870974 -181322690 + AT_rich Low_complexity Low_complexity 1 21 0 1223 195 41 105 chr1 100871572 100871677 -181321987 + MLT1A1 LTR MaLR 1 111 -254 2194 112 3 10 chr1 100871677 100871982 -181321682 + AluSc SINE Alu 1 303 -6 1223 195 41 105 chr1 100871982 100872054 -181321610 + MLT1A1 LTR MaLR 111 186 -179 2448 76 6 3 chr1 100872054 100872383 -181321281 + L1PA7 LINE L1 5820 6149 -5 1223 195 41 105 chr1 100872383 100872594 -181321070 + MLT1A1 LTR MaLR 186 365 0 354 253 211 26 chr1 100873070 100873264 -181320400 + MER65A LTR ERV1 1 230 -215 324 291 93 61 chr1 100873603 100873881 -181319783 + MER65B-int LTR ERV1 27 313 -4558 192 40 0 0 chr1 100873882 100873907 -181319757 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 365 277 11 57 chr1 100874121 100874298 -181319366 - MER54B LTR ERVL -547 246 78 513 250 19 91 chr1 100874298 100874506 -181319158 + MER65B-int LTR ERV1 662 854 -4017 1079 197 53 116 chr1 100874699 100875111 -181318553 + MER65B-int LTR ERV1 1178 1615 -4306 2299 69 0 10 chr1 100875111 100875240 -181318424 + AluSp SINE Alu 1 130 -183 288 0 0 0 chr1 100875240 100875272 -181318392 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2299 69 0 10 chr1 100875272 100875430 -181318234 + AluSp SINE Alu 130 285 -28 186 71 0 0 chr1 100875434 100875462 -181318202 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1079 197 53 116 chr1 100875462 100875786 -181317878 + MER65B-int LTR ERV1 1618 2843 -3078 2455 233 42 53 chr1 100875791 100876521 -181317143 + MER65B-int LTR ERV1 3452 4173 -698 1256 291 36 9 chr1 100876696 100877116 -181316548 + MER65B-int LTR ERV1 4440 4870 -1 560 234 39 19 chr1 100877117 100877271 -181316393 + MER65B LTR ERV1 1 157 -374 35 54 0 0 chr1 100877934 100877990 -181315674 + AT_rich Low_complexity Low_complexity 1 56 0 6713 219 62 52 chr1 100878585 100880832 -181312832 - L1MC4a LINE L1 -7 7801 5534 232 290 0 0 chr1 100881825 100881887 -181311777 + L1MC4a LINE L1 5985 6046 -1762 193 366 97 0 chr1 100882920 100883013 -181310651 + L2 LINE L2 3152 3253 -19 186 279 162 15 chr1 100883095 100883163 -181310501 - MIR SINE MIR -148 114 37 186 293 49 98 chr1 100883250 100883414 -181310250 - MIR SINE MIR -55 207 52 200 283 0 17 chr1 100883468 100883528 -181310136 + GA-rich Low_complexity Low_complexity 2 60 0 2209 116 3 0 chr1 100883757 100884051 -181309613 - AluSp SINE Alu -18 295 1 908 237 125 9 chr1 100884059 100884369 -181309295 + LTR68 LTR ERV1 81 584 -156 1991 128 3 7 chr1 100884506 100884794 -181308870 + AluSx SINE Alu 2 288 -24 4584 108 25 31 chr1 100884822 100885621 -181308043 + MER51B-int LTR ERV1 1852 2645 -2572 2364 144 0 0 chr1 100885667 100886020 -181307644 + MER51B-int LTR ERV1 7464 7816 0 1887 83 12 2 chr1 100886021 100886338 -181307326 + MER51B LTR ERV1 1 377 0 290 307 73 0 chr1 100887328 100887465 -181306199 - L1MC4a LINE L1 -1892 5916 5770 442 184 11 43 chr1 100887484 100887570 -181306094 + (TA)n Simple_repeat Simple_repeat 2 89 -91 2562 88 128 8 chr1 100887570 100887970 -181305694 - LTR7 LTR ERV1 -2 448 1 442 184 11 43 chr1 100887970 100888068 -181305596 + (TA)n Simple_repeat Simple_repeat 89 180 0 731 240 0 0 chr1 100888317 100888509 -181305155 + L1PA15 LINE L1 4342 4533 -1613 3806 59 16 22 chr1 100888623 100888945 -181304719 - LTR2B LTR ERV1 0 490 171 2442 32 4 0 chr1 100888945 100889224 -181304440 - AluY SINE Alu -11 300 21 3806 59 16 22 chr1 100889224 100889394 -181304270 - LTR2B LTR ERV1 -319 171 1 5219 127 36 19 chr1 100889459 100890062 -181303602 + L1PA15 LINE L1 4577 5168 -997 1619 201 7 7 chr1 100890062 100890366 -181303298 + AluJb SINE Alu 1 304 -8 5219 127 36 19 chr1 100890366 100891337 -181302327 + L1PA15 LINE L1 5168 6164 -1 400 192 39 0 chr1 100893265 100893369 -181300295 - L1MA9 LINE L1 -188 6124 6017 1487 173 30 48 chr1 100893893 100894405 -181299259 + L1M2 LINE L1 5089 5596 -716 389 298 47 11 chr1 100894426 100894600 -181299064 + MIR SINE MIR 34 212 -50 195 69 0 0 chr1 100894619 100894648 -181299016 + (CAT)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr1 100894793 100894816 -181298848 + AT_rich Low_complexity Low_complexity 1 23 0 349 329 81 6 chr1 100895348 100895509 -181298155 + MIR3 SINE MIR 5 177 -31 461 183 158 9 chr1 100895862 100896143 -181297521 + MLT1E2 LTR MaLR 1 291 -335 * 751 248 15 10 chr1 100896127 100896325 -181297339 + MLT1E2 LTR MaLR 420 618 -8 312 263 40 0 chr1 100897215 100897314 -181296350 - MER45 DNA AcHobo -1478 103 1 25 0 0 0 chr1 100897401 100897426 -181296238 + AT_rich Low_complexity Low_complexity 1 25 0 192 213 0 43 chr1 100898611 100898658 -181295006 + L2 LINE L2 3228 3272 0 198 0 0 0 chr1 100899913 100899935 -181293729 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 252 333 61 34 chr1 100900205 100900352 -181293312 - L2 LINE L2 0 3272 3122 391 303 114 31 chr1 100902216 100902833 -181290831 + L1ME3A LINE L1 5279 5957 -207 247 250 93 0 chr1 100902964 100903072 -181290592 + L1ME3A LINE L1 6038 6155 -15 337 360 101 0 chr1 100903202 100903469 -181290195 - L2 LINE L2 -1604 1710 1417 474 219 21 94 chr1 100904206 100904324 -181289340 - L2 LINE L2 -2 3311 3211 3626 107 27 18 chr1 100904324 100904883 -181288781 - LTR6A LTR ERV1 0 564 1 474 219 21 94 chr1 100904883 100904956 -181288708 - L2 LINE L2 -102 3211 3134 202 286 0 0 chr1 100905650 100905720 -181287944 + T-rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr1 100906280 100906310 -181287354 + (A)n Simple_repeat Simple_repeat 1 30 0 1714 169 0 36 chr1 100906439 100906740 -181286924 + AluJb SINE Alu 1 290 -22 1329 202 26 83 chr1 100907559 100907946 -181285718 - MLT1A1 LTR MaLR 0 365 1 266 339 69 8 chr1 100908439 100908569 -181285095 - MER45A DNA AcHobo -35 143 6 239 224 35 0 chr1 100908603 100908661 -181285003 + T-rich Low_complexity Low_complexity 3 62 0 306 378 187 5 chr1 100909013 100909222 -181284442 + L2 LINE L2 3016 3262 -10 1841 141 176 16 chr1 100910435 100910804 -181282860 + MSTA LTR MaLR 1 428 0 8953 135 17 42 chr1 100910806 100912340 -181281324 + MSTA-int LTR MaLR 3 1496 -84 3470 34 10 0 chr1 100912340 100912776 -181280888 + L1PA4 LINE L1 5717 6156 0 8953 135 17 42 chr1 100912776 100912859 -181280805 + MSTA-int LTR MaLR 1496 1580 0 1728 158 174 11 chr1 100912859 100913227 -181280437 + MSTA LTR MaLR 1 428 0 763 297 95 23 chr1 100913557 100914032 -181279632 - MLT1J LTR MaLR 0 511 3 256 221 90 41 chr1 100915308 100915453 -181278211 + L2 LINE L2 3004 3155 -158 495 128 47 0 chr1 100915714 100915800 -181277864 - LOR1a LTR ERV1 0 497 408 473 160 0 0 chr1 100915806 100915881 -181277783 + LOR1a LTR ERV1 423 497 0 5749 126 51 30 chr1 100915881 100916946 -181276718 + LOR1a-int LTR ERV1 1 1087 -7033 * 24591 105 34 18 chr1 100916929 100918040 -181275624 + LOR1a-int LTR ERV1 1269 2361 -5759 2382 95 0 0 chr1 100918040 100918336 -181275328 - AluY SINE Alu -15 296 1 24591 105 34 18 chr1 100918336 100921415 -181272249 + LOR1a-int LTR ERV1 2361 5524 -2596 1639 138 7 7 chr1 100921405 100921680 -181271984 + LOR1a-int LTR ERV1 5801 6075 -2045 * 652 89 0 0 chr1 100921671 100921761 -181271903 + LOR1b-int LTR ERV1 8031 8120 0 * 2224 168 41 0 chr1 100921761 100922178 -181271486 + LOR1b LTR ERV1 1 434 -27 298 250 74 46 chr1 100922200 100922308 -181271356 + MIR SINE MIR 23 133 -129 5643 75 13 29 chr1 100922525 100923365 -181270299 - L1PA8A LINE L1 -1 6130 5304 2269 199 34 2 chr1 100924372 100924819 -181268845 - LOR1b LTR ERV1 0 461 1 1422 94 67 5 chr1 100924947 100925170 -181268494 - LTR12 LTR ERV1 0 714 478 341 245 0 10 chr1 100925186 100925288 -181268376 - LTR30 LTR ERV1 -98 624 524 1397 114 124 0 chr1 100925288 100925642 -181268022 - LTR12 LTR ERV1 -456 1683 57 3380 82 16 12 chr1 100926032 100926517 -181267147 - LTR15 LTR ERV1 -6 487 1 238 254 0 15 chr1 100926827 100926894 -181266770 + CT-rich Low_complexity Low_complexity 1 66 0 5746 271 21 9 chr1 100928446 100930408 -181263256 + L1P LINE L1 1670 3656 -2490 4186 100 44 2 chr1 100930419 100931037 -181262627 - L1PA10 LINE L1 -5 6163 5520 5701 75 3 0 chr1 100931037 100931814 -181261850 - L1PA6 LINE L1 0 6154 5376 2976 81 0 24 chr1 100931807 100932263 -181261401 - L1PA6 LINE L1 -2095 4051 3607 * 7576 64 13 13 chr1 100932257 100933361 -181260303 - L1PA10 LINE L1 -756 5390 4287 * 23504 114 18 12 chr1 100933357 100937211 -181256453 - L1PA10 LINE L1 -2261 3885 11 22862 180 27 21 chr1 100937223 100941754 -181251910 - L1PA8A LINE L1 -600 5846 1257 324 0 0 0 chr1 100941754 100941790 -181251874 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22862 180 27 21 chr1 100941790 100943051 -181250613 - L1PA8A LINE L1 -5189 1257 5 379 192 45 11 chr1 100943055 100943161 -181250503 + L1P LINE L1 3645 3754 -2392 2021 110 3 21 chr1 100943336 100943654 -181250010 + AluSg SINE Alu 5 289 -21 195 209 23 0 chr1 100944617 100944660 -181249004 - L2 LINE L2 0 3272 3229 298 200 14 0 chr1 100945336 100945406 -181248258 - L1P4 LINE L1 -669 5497 5427 * 6279 239 25 13 chr1 100945402 100947182 -181246482 - L1P4 LINE L1 -1280 4866 3065 529 214 21 14 chr1 100947175 100947315 -181246349 - L1P4 LINE L1 -3900 2246 2106 * 4720 238 11 20 chr1 100947316 100948056 -181245608 - L1PA15-16 LINE L1 -3071 3726 2981 2595 138 16 16 chr1 100948056 100948484 -181245180 + MSTA LTR MaLR 1 428 0 4720 238 11 20 chr1 100948484 100948609 -181245055 - L1PA15-16 LINE L1 -3816 2981 2856 2455 95 0 0 chr1 100948609 100948915 -181244749 - AluY SINE Alu -5 306 1 4720 238 11 20 chr1 100948915 100949804 -181243860 - L1PA15-16 LINE L1 -3941 2856 1978 6769 69 0 2 chr1 100949806 100950941 -181242723 - L1PA6 LINE L1 -8 6146 5007 2397 97 3 0 chr1 100950952 100951252 -181242412 + AluY SINE Alu 1 301 -10 22811 66 2 7 chr1 100951255 100954460 -181239204 + L1P LINE L1 1813 5002 -1144 351 227 10 0 chr1 100954453 100954550 -181239114 - L1PA15-16 LINE L1 -4809 1978 1881 * 16164 168 28 9 chr1 100954580 100960119 -181233545 + L1MA2 LINE L1 547 6241 -1482 2140 60 3 21 chr1 100960119 100960436 -181233228 + AluY SINE Alu 1 312 0 16164 168 28 9 chr1 100960436 100961948 -181231716 + L1MA2 LINE L1 6241 7723 0 22 0 0 0 chr1 100961948 100961970 -181231694 + AT_rich Low_complexity Low_complexity 1 22 0 2184 136 0 0 chr1 100962063 100962371 -181231293 + AluSx SINE Alu 4 311 -1 434 259 164 0 chr1 100962371 100962591 -181231073 + L1ME3A LINE L1 5693 5948 -222 358 298 40 49 chr1 100962942 100963167 -181230497 - L1M4 LINE L1 -1038 5108 4886 2314 144 11 3 chr1 100963395 100963756 -181229908 - THE1B LTR MaLR 0 364 1 210 274 12 12 chr1 100963858 100963942 -181229722 + (TAA)n Simple_repeat Simple_repeat 1 84 0 917 176 68 0 chr1 100964071 100964247 -181229417 - MLT1D LTR MaLR 0 505 318 473 176 33 35 chr1 100966154 100966298 -181227366 + LTR21B LTR ERV1 326 438 0 1599 179 48 27 chr1 100966325 100966655 -181227009 - MER1B DNA MER1_type 0 337 1 21 36 0 0 chr1 100966893 100966921 -181226743 + AT_rich Low_complexity Low_complexity 1 28 0 409 281 76 23 chr1 100967792 100967963 -181225701 + MIR SINE MIR 62 241 -21 896 246 50 0 chr1 100968209 100968429 -181225235 - MIR SINE MIR -9 253 23 447 329 13 48 chr1 100969447 100969760 -181223904 + MLT1K LTR MaLR 277 578 -10 27 0 0 0 chr1 100971667 100971694 -181221970 + AT_rich Low_complexity Low_complexity 1 27 0 2191 71 0 0 chr1 100971787 100972055 -181221609 + AluY SINE Alu 38 305 -6 220 294 153 12 chr1 100972291 100972376 -181221288 + L2 LINE L2 3173 3269 -3 27 29 0 0 chr1 100973108 100973142 -181220522 + AT_rich Low_complexity Low_complexity 1 34 0 298 304 0 29 chr1 100974161 100974263 -181219401 - MIR SINE MIR -52 210 112 795 217 38 52 chr1 100974357 100974569 -181219095 - MER63A DNA MER1_type 0 210 2 189 329 49 0 chr1 100977585 100977667 -181215997 + MIR SINE MIR 45 130 -78 4391 111 293 112 chr1 100978757 100980193 -181213471 - pTR5 LTR ERV1 0 2438 743 2425 83 0 6 chr1 100980259 100980572 -181213092 + AluY SINE Alu 1 311 0 425 317 134 11 chr1 100981233 100981419 -181212245 - MIR SINE MIR -13 249 41 695 311 31 16 chr1 100981623 100981941 -181211723 - LTR16C LTR ERVL -35 456 134 189 0 0 0 chr1 100982141 100982162 -181211502 + (CA)n Simple_repeat Simple_repeat 2 22 0 543 312 61 49 chr1 100982178 100982672 -181210992 - ERVL LTR ERVL -384 5380 4881 726 322 60 42 chr1 100982838 100983320 -181210344 - ERVL LTR ERVL -1120 4644 4154 885 220 0 0 chr1 100983712 100983898 -181209766 + L1PB4 LINE L1 5968 6153 -3 254 335 11 80 chr1 100984382 100984570 -181209094 + LTR16C LTR ERVL 317 491 0 848 255 18 102 chr1 100984867 100985251 -181208413 + MLT1H1 LTR MaLR 204 555 0 1585 245 5 24 chr1 100985545 100985917 -181207747 + MLT1A1 LTR MaLR 1 365 0 919 104 0 0 chr1 100985941 100986076 -181207588 + L1PB1 LINE L1 6012 6146 -5 315 345 59 48 chr1 100986563 100986853 -181206811 + LTR16C LTR ERVL 199 491 0 272 97 75 0 chr1 100987020 100987113 -181206551 + (TA)n Simple_repeat Simple_repeat 1 100 0 761 303 132 26 chr1 100987122 100987843 -181205821 + L2 LINE L2 2520 3312 -1 2051 143 73 12 chr1 100988303 100988646 -181205018 - THE1B LTR MaLR 0 364 1 240 255 28 19 chr1 100988817 100988923 -181204741 + HAL1 LINE L1 1198 1304 -1203 2104 123 0 0 chr1 100989079 100989392 -181204272 - AluSx SINE Alu 0 313 1 10204 92 6 1 chr1 100990079 100991509 -181202155 + THE1B-int LTR MaLR 132 1569 -11 1431 110 68 38 chr1 100991519 100991782 -181201882 + THE1B LTR MaLR 1 271 -93 1164 217 54 87 chr1 100991804 100992251 -181201413 - MSTB1 LTR MaLR 0 432 1 454 327 149 32 chr1 100993701 100994287 -181199377 + L2 LINE L2 2661 3312 -1 1715 211 58 5 chr1 100994815 100995213 -181198451 - MLT1A1-int LTR MaLR -1 1370 952 2293 207 109 18 chr1 100995303 100995873 -181197791 - MLT1A1-int LTR MaLR -393 978 357 25 0 0 0 chr1 100995873 100995898 -181197766 + AT_rich Low_complexity Low_complexity 1 25 0 663 130 17 9 chr1 100996659 100996774 -181196890 - L1PA4 LINE L1 -227 5928 5813 655 191 40 8 chr1 100996777 100996903 -181196761 - FLAM_C SINE Alu -3 130 1 249 200 0 17 chr1 100996905 100996965 -181196699 - MLT1A1-int LTR MaLR -1391 344 286 1754 200 38 5 chr1 100997166 100997561 -181196103 - MLT2C2 LTR ERVL -48 416 9 243 288 0 0 chr1 100997581 100997661 -181196003 - MER70B LTR ERVL -17 561 482 1429 288 52 14 chr1 100998923 100999406 -181194258 - MER70-int LTR ERVL -1494 3529 3029 2614 97 17 6 chr1 100999429 100999789 -181193875 - THE1B LTR MaLR 0 364 1 417 312 45 41 chr1 101000581 101000850 -181192814 - MER70-int LTR ERVL -2485 2538 2269 11806 138 33 6 chr1 101001672 101003986 -181189678 + L1PA8A LINE L1 3157 5531 -600 23285 105 8 12 chr1 101003998 101007670 -181185994 + L1P LINE L1 11 3668 -2478 27279 44 3 3 chr1 101057673 101058490 -181135174 + L1PA4 LINE L1 2023 2839 -3316 2815 16 0 0 chr1 101058490 101058796 -181134868 + AluYa5 SINE Alu 1 306 -5 27279 44 3 3 chr1 101058796 101062116 -181131548 + L1PA4 LINE L1 2839 6155 0 381 22 0 0 chr1 101062330 101062376 -181131288 + (TG)n Simple_repeat Simple_repeat 2 47 0 213 300 69 62 chr1 101063177 101063307 -181130357 - MIR SINE MIR -120 142 12 2090 88 7 11 chr1 101064034 101064345 -181129319 + AluY SINE Alu 1 310 0 524 259 70 32 chr1 101064347 101064532 -181129132 - MIR SINE MIR -6 256 65 1995 171 40 17 chr1 101064638 101064990 -181128674 - MLT1A1 LTR MaLR -3 362 3 1926 177 13 47 chr1 101065419 101065803 -181127861 - MER73 LTR ERVL -268 376 6 1398 215 18 7 chr1 101065807 101066086 -181127578 + L1M1 LINE L1 16 297 -7268 1931 200 15 0 chr1 101066091 101066416 -181127248 + L1M1 LINE L1 1535 1864 -5701 2744 89 17 0 chr1 101066467 101066816 -181126848 + THE1A LTR MaLR 1 355 0 12414 94 3 6 chr1 101066816 101068401 -181125263 + THE1A-int LTR MaLR 1 1580 0 1628 85 9 0 chr1 101068401 101068613 -181125051 + THE1A LTR MaLR 1 214 -141 31469 165 18 17 chr1 101068694 101074470 -181119194 + HUERS-P2 LTR ERV1 627 6603 -417 2151 133 9 12 chr1 101074491 101074815 -181118849 + HUERS-P2 LTR ERV1 2766 3088 0 4132 169 111 5 chr1 101074815 101075562 -181118102 + LTR1B LTR ERV1 1 826 0 20353 87 9 8 chr1 101075562 101079063 -181114601 + HERVL LTR ERVL 1944 5550 -104 302 288 51 37 chr1 101079210 101079400 -181114264 + MIR SINE MIR 54 251 -11 254 286 100 0 chr1 101079573 101079643 -181114021 - MIR SINE MIR -171 91 15 2921 44 15 3 chr1 101079990 101080331 -181113333 - L1PA3 LINE L1 -5 6150 5806 5967 38 0 0 chr1 101080332 101081046 -181112618 + L1P LINE L1 3193 3906 -2240 1806 239 110 47 chr1 101081197 101081879 -181111785 + MER50 LTR ERV1 10 734 0 1826 209 158 5 chr1 101081914 101082350 -181111314 - MLT1D LTR MaLR 0 505 3 619 229 20 13 chr1 101082451 101082604 -181111060 + MIR SINE MIR 1 154 -108 24 53 0 0 chr1 101083082 101083120 -181110544 + AT_rich Low_complexity Low_complexity 1 38 0 247 385 67 0 chr1 101084076 101084180 -181109484 + L2 LINE L2 3155 3265 -7 2490 182 33 0 chr1 101084660 101085115 -181108549 - L1MC1 LINE L1 0 6333 5864 234 206 0 0 chr1 101085324 101085387 -181108277 + CT-rich Low_complexity Low_complexity 2 64 0 489 264 48 81 chr1 101085996 101086533 -181107131 - L1MC5 LINE L1 -10 8032 7492 774 308 28 42 chr1 101086610 101086971 -181106693 - L1MC4 LINE L1 -1012 7030 6675 281 224 64 40 chr1 101087066 101087191 -181106473 - MER90 LTR ERV1 -46 529 402 668 206 75 0 chr1 101087492 101087652 -181106012 - L1MA10 LINE L1 -1 6333 6162 857 199 68 14 chr1 101087816 101088041 -181105623 - L1M3 LINE L1 -598 5573 5337 * 987 151 6 0 chr1 101088019 101088191 -181105473 - L1M3 LINE L1 -1314 4832 4660 1590 192 25 6 chr1 101088241 101088559 -181105105 + MER74A LTR ERVL 4 327 -231 454 267 29 70 chr1 101088607 101088779 -181104885 + MER5B DNA MER1_type 14 178 0 2351 70 0 17 chr1 101089056 101089357 -181104307 - AluY SINE Alu -15 296 1 714 192 160 0 chr1 101089707 101089863 -181103801 + MER1B DNA MER1_type 1 181 -116 975 141 20 0 chr1 101089863 101090029 -181103635 - L1PB4 LINE L1 -188 5968 5799 195 42 0 0 chr1 101090035 101090059 -181103605 + (TC)n Simple_repeat Simple_repeat 2 25 0 318 50 0 0 chr1 101091123 101091163 -181102501 + (TG)n Simple_repeat Simple_repeat 1 40 0 193 238 0 0 chr1 101091351 101091393 -181102271 + MER5A DNA MER1_type 120 161 -28 21 36 0 0 chr1 101091427 101091455 -181102209 + AT_rich Low_complexity Low_complexity 1 28 0 1569 65 4 108 chr1 101091459 101091719 -181101945 - L1PA8 LINE L1 -72 6100 5868 446 50 83 0 chr1 101091715 101091775 -181101889 + L1P LINE L1 5138 5202 -944 * 232 378 36 16 chr1 101092266 101092459 -181101205 - MIR SINE MIR -9 253 57 3729 177 87 31 chr1 101093300 101094331 -181099333 - L1MB3 LINE L1 -12 6171 5082 433 327 71 52 chr1 101095532 101096009 -181097655 + L2 LINE L2 1528 2013 -1301 518 256 57 6 chr1 101096612 101096788 -181096876 - LTR16A LTR ERVL -102 348 164 2396 154 13 70 chr1 101097261 101097805 -181095859 - L1MA9 LINE L1 -1 6311 5799 15204 40 0 0 chr1 101097805 101100435 -181093229 + L1PA3 LINE L1 3528 6155 0 305 206 48 0 chr1 101100481 101100544 -181093120 + MER77 LTR ERV1 536 601 -4 2006 126 0 46 chr1 101101087 101101389 -181092275 - AluSx SINE Alu -24 288 1 747 311 55 8 chr1 101101658 101102037 -181091627 - HERV16 LTR ERVL -2944 2052 1656 404 291 10 20 chr1 101102840 101103075 -181090589 - L1MC4a LINE L1 -304 5817 5681 2215 107 17 0 chr1 101103207 101103498 -181090166 + AluSx SINE Alu 1 296 -16 258 303 87 27 chr1 101105735 101105920 -181087744 + MIR SINE MIR 67 262 0 23 54 0 0 chr1 101106007 101106044 -181087620 + AT_rich Low_complexity Low_complexity 1 37 0 299 369 0 0 chr1 101106560 101106671 -181086993 + MIR3 SINE MIR 93 203 -5 249 268 0 0 chr1 101107419 101107475 -181086189 + (CA)n Simple_repeat Simple_repeat 1 56 0 1942 136 63 0 chr1 101107751 101108037 -181085627 - AluSx SINE Alu -8 304 1 1629 218 3 3 chr1 101108890 101109184 -181084480 - AluJb SINE Alu -18 294 1 2111 150 90 23 chr1 101109633 101110032 -181083632 + MSTB LTR MaLR 1 426 0 345 187 11 55 chr1 101112197 101112288 -181081376 - FLAM SINE Alu -8 125 39 1818 204 14 10 chr1 101112288 101112705 -181080959 + L1 LINE L1 4610 5028 -1118 2276 165 7 21 chr1 101112706 101113142 -181080522 + L1MA8 LINE L1 5620 6049 -242 459 253 27 7 chr1 101113164 101113314 -181080350 + L1 LINE L1 5030 5182 -964 4372 40 0 0 chr1 101113419 101113975 -181079689 - L1P LINE L1 -1003 5143 4588 1616 268 58 6 chr1 101113977 101114444 -181079220 - MER77 LTR ERV1 -58 547 57 1186 208 17 25 chr1 101114697 101114938 -181078726 - MER8 DNA MER2_type 0 239 1 315 295 68 68 chr1 101116033 101116223 -181077441 - L2 LINE L2 -20 3293 3104 4091 90 36 12 chr1 101117000 101117665 -181075999 + L1M1 LINE L1 2929 3609 -3956 621 58 0 0 chr1 101119016 101119102 -181074562 + (GGAA)n Simple_repeat Simple_repeat 4 89 0 477 155 2 50 chr1 101119102 101119223 -181074441 + L1MDa LINE L1 2580 2695 -3845 868 240 61 40 chr1 101119237 101119612 -181074052 + L1MDa LINE L1 2765 3147 -3393 1638 189 58 2 chr1 101119666 101120117 -181073547 + L1MDa LINE L1 3416 3891 -2649 281 206 15 0 chr1 101121033 101121101 -181072563 + L1MB8 LINE L1 6108 6176 -2 1470 214 92 6 chr1 101121290 101121626 -181072038 + MLT1A1 LTR MaLR 1 365 0 2279 114 0 0 chr1 101121667 101121964 -181071700 + AluSx SINE Alu 1 297 -15 1654 133 0 0 chr1 101123194 101123427 -181070237 + AluSx SINE Alu 1 233 -79 28 0 0 0 chr1 101123494 101123522 -181070142 + AT_rich Low_complexity Low_complexity 1 28 0 306 219 11 0 chr1 101123541 101123630 -181070034 - MLT1A1 LTR MaLR 0 365 305 3461 67 2 17 chr1 101123884 101124349 -181069315 + L1PA8 LINE L1 5701 6158 -14 322 303 33 8 chr1 101124446 101124568 -181069096 - L1M4 LINE L1 -4835 2020 1896 341 239 60 41 chr1 101124574 101124792 -181068872 - L1M4 LINE L1 -5189 1670 1449 643 193 21 0 chr1 101124838 101124978 -181068686 - L1MA6 LINE L1 0 6300 6158 4048 171 20 21 chr1 101125084 101125927 -181067737 - L1MA6 LINE L1 -14 6286 5445 1449 95 9 0 chr1 101125940 101126150 -181067514 - LTR12 LTR ERV1 -23 691 480 304 263 10 0 chr1 101126150 101126249 -181067415 - LTR30 LTR ERV1 -79 643 544 4159 150 76 81 chr1 101126250 101127375 -181066289 - pTR5 LTR ERV1 -414 2024 769 3524 184 30 24 chr1 101127381 101127547 -181066117 - L1MA6 LINE L1 -747 5399 5235 3212 138 24 6 chr1 101127547 101128091 -181065573 - LTR38 LTR ERV1 0 556 3 3524 184 30 24 chr1 101128091 101128803 -181064861 - L1MA6 LINE L1 -911 5235 4557 871 221 64 33 chr1 101128831 101129096 -181064568 + MER39 LTR ERV1 13 432 -275 425 267 28 68 chr1 101129189 101129365 -181064299 + MER5B DNA MER1_type 7 175 -3 413 331 99 21 chr1 101130181 101130465 -181063199 - ERVL LTR ERVL -2553 3211 2906 632 194 32 26 chr1 101130577 101130732 -181062932 + MLT1E LTR MaLR 438 593 0 636 252 43 9 chr1 101130743 101130973 -181062691 - L1ME3A LINE L1 -199 5971 5734 993 287 77 34 chr1 101130985 101132047 -181061617 - L1ME3A LINE L1 -498 5672 4570 321 250 0 0 chr1 101132050 101132122 -181061542 + MSTB LTR MaLR 1 72 -354 935 263 125 0 chr1 101132223 101132607 -181061057 - L1ME LINE L1 -381 5781 5350 356 365 37 28 chr1 101134217 101134431 -181059233 + L2 LINE L2 2653 2868 -446 1880 158 25 36 chr1 101134893 101135336 -181058328 - LTR21B LTR ERV1 0 438 1 370 169 11 79 chr1 101135850 101135939 -181057725 + MER20 DNA MER1_type 1 83 -136 2512 155 5 7 chr1 101135956 101136370 -181057294 - MER61B LTR ERV1 0 425 13 6505 130 17 15 chr1 101136371 101137793 -181055871 - MER61B-int LTR ERV1 0 5217 3755 8595 102 9 24 chr1 101137793 101139097 -181054567 - MER61B-int LTR ERV1 -1644 3573 2290 2245 104 0 10 chr1 101139097 101139394 -181054270 + AluSx SINE Alu 2 295 -17 8595 102 9 24 chr1 101139394 101139514 -181054150 - MER61B-int LTR ERV1 -2927 2290 2170 9959 146 33 23 chr1 101139520 101142141 -181051523 + L1P3 LINE L1 6 2651 -3810 9808 171 21 14 chr1 101142148 101145563 -181048101 - L1 LINE L1 -2354 5211 1773 544 116 47 0 chr1 101145553 101145639 -181048025 - L1 LINE L1 -7004 561 472 * 2445 191 20 11 chr1 101145713 101146168 -181047496 - L1 LINE L1 -7095 470 12 343 334 210 24 chr1 101146502 101146840 -181046824 + L2 LINE L2 2912 3312 -1 1205 194 56 53 chr1 101147048 101147332 -181046332 + AluJo SINE Alu 9 293 -19 10739 82 13 1 chr1 101148350 101149747 -181043917 + L1P LINE L1 22 1435 -4711 383 289 42 38 chr1 101199747 101200010 -180993654 - L1ME LINE L1 -637 5527 5264 1422 192 81 43 chr1 101200343 101200712 -180992952 + MER52A LTR ERV1 1 383 -1372 3703 99 0 2 chr1 101200729 101201246 -180992418 - HERVL-A2 LTR ERVL -769 4885 4370 4633 56 16 11 chr1 101201246 101202365 -180991299 + MER11A LTR ERVK 1 1266 0 31130 78 6 1 chr1 101202365 101206618 -180987046 - HERVL-A2 LTR ERVL -1279 4375 1 3129 114 13 2 chr1 101206618 101207066 -180986598 - MLT2A2 LTR ERVL 0 453 1 18876 153 49 28 chr1 101207066 101207202 -180986462 - L1 LINE L1 -3804 3761 3629 2093 115 7 7 chr1 101207202 101207516 -180986148 - AluSq SINE Alu 0 313 1 18876 153 49 28 chr1 101207516 101207527 -180986137 - L1 LINE L1 -3936 3629 3620 2441 74 0 0 chr1 101207527 101207823 -180985841 - AluY SINE Alu -15 296 1 18876 153 49 28 chr1 101207823 101211319 -180982345 - L1 LINE L1 -3945 3620 5 6235 196 22 4 chr1 101211318 101212698 -180980966 + L1 LINE L1 3711 5119 -1027 * 1125 139 20 10 chr1 101212698 101212899 -180980765 + L1MA2 LINE L1 6101 6304 0 6235 196 22 4 chr1 101212899 101212913 -180980751 + L1 LINE L1 5119 5131 -1015 1143 244 169 2 chr1 101213090 101213528 -180980136 + MER34 LTR ERV1 28 538 -4 371 347 65 14 chr1 101213533 101213749 -180979915 + MER93a LTR ERV1 140 366 -36 560 141 20 27 chr1 101213799 101213948 -180979716 + (TA)n Simple_repeat Simple_repeat 1 148 0 13228 145 29 25 chr1 101213952 101216359 -180977305 + Tigger1 DNA MER2_type 1 2418 0 252 86 0 0 chr1 101217499 101217534 -180976130 + (TA)n Simple_repeat Simple_repeat 2 36 0 549 125 0 0 chr1 101217543 101217623 -180976041 + Tigger1 DNA MER2_type 1023 1102 -1316 347 244 0 0 chr1 101217821 101217899 -180975765 + FRAM/FAM SINE Alu 1 72 -94 786 186 124 0 chr1 101217944 101218121 -180975543 - MER58A DNA MER1_type -25 199 1 96 85 0 0 chr1 101218908 101219144 -180974520 + AT_rich Low_complexity Low_complexity 1 236 0 524 333 89 4 chr1 101219327 101219597 -180974067 - LTR16C LTR ERVL -39 452 160 641 58 0 0 chr1 101220069 101220156 -180973508 - L1PA8 LINE L1 0 6172 6086 406 277 23 79 chr1 101220271 101220448 -180973216 - MER5B DNA MER1_type -1 177 11 1528 194 22 6 chr1 101220477 101220796 -180972868 - MER74A LTR ERVL -231 327 4 887 152 6 0 chr1 101220846 101221010 -180972654 + L1MB1 LINE L1 4660 4824 -1322 2874 173 54 9 chr1 101221052 101221160 -180972504 + L1MB1 LINE L1 5380 5482 -707 1775 179 7 16 chr1 101221160 101221468 -180972196 + AluJb SINE Alu 1 305 -7 2874 173 54 9 chr1 101221468 101221990 -180971674 + L1MB1 LINE L1 5482 6038 -151 1122 171 22 4 chr1 101221990 101222216 -180971448 + L1MA10 LINE L1 6102 6333 -1 247 255 134 13 chr1 101222398 101222555 -180971109 + L1MC4 LINE L1 7866 8041 -1 925 196 0 0 chr1 101222619 101222782 -180970882 + FRAM SINE Alu 1 157 -19 442 324 123 31 chr1 101222988 101223281 -180970383 - L2 LINE L2 -6 3307 2988 225 234 65 32 chr1 101223513 101223637 -180970027 + L1ME4a LINE L1 5990 6117 -4 215 224 13 0 chr1 101224185 101224261 -180969403 + GA-rich Low_complexity Low_complexity 2 78 0 2468 164 26 0 chr1 101224467 101224925 -180968739 + L1MC1 LINE L1 5864 6333 0 208 188 62 0 chr1 101225959 101226023 -180967641 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 0 0 0 chr1 101226266 101226287 -180967377 + AT_rich Low_complexity Low_complexity 1 21 0 276 214 14 29 chr1 101226385 101226455 -180967209 + L1ME LINE L1 5532 5600 -521 760 237 53 37 chr1 101226919 101227164 -180966500 - MIR SINE MIR -12 250 2 1906 200 84 23 chr1 101227267 101227741 -180965923 + MLT1D LTR MaLR 3 505 0 259 301 0 41 chr1 101227818 101227891 -180965773 - MIR SINE MIR -123 85 16 363 284 86 9 chr1 101228220 101228336 -180965328 + MIR SINE MIR 19 143 -65 283 354 89 0 chr1 101228451 101228609 -180965055 - MIR SINE MIR -11 251 80 225 214 89 112 chr1 101228766 101228922 -180964742 - MIR SINE MIR -103 105 2 256 329 0 0 chr1 101229811 101229881 -180963783 + GA-rich Low_complexity Low_complexity 1 70 0 925 139 19 0 chr1 101229942 101230100 -180963564 - L1PA15 LINE L1 -5 6160 6000 249 253 182 18 chr1 101230123 101230293 -180963371 + L1M4 LINE L1 2733 2930 -3216 2548 37 0 7 chr1 101230941 101231238 -180962426 + AluY SINE Alu 1 295 -16 21 57 0 0 chr1 101231522 101231557 -180962107 + AT_rich Low_complexity Low_complexity 1 35 0 273 128 0 0 chr1 101232007 101232054 -180961610 + (TC)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr1 101232906 101232927 -180960737 + AT_rich Low_complexity Low_complexity 1 21 0 1515 100 0 0 chr1 101233621 101233831 -180959833 + L1PA7 LINE L1 5944 6153 -1 236 253 116 21 chr1 101234387 101234482 -180959182 - MIR SINE MIR -85 177 74 209 384 10 20 chr1 101234741 101234840 -180958824 - L2 LINE L2 -180 3092 2995 18593 193 16 31 chr1 101235764 101241450 -180952214 + L1PA12 LINE L1 1 6485 -1099 6150 101 12 14 chr1 101241554 101242740 -180950924 + L1PA11 LINE L1 4976 6174 0 1456 199 3 0 chr1 101242824 101243116 -180950548 + L1MB3 LINE L1 5814 6106 -77 1811 154 53 36 chr1 101243138 101243494 -180950170 - THE1B LTR MaLR -2 362 1 12094 82 9 0 chr1 101243494 101245060 -180948604 - THE1B-int LTR MaLR 0 1580 1 1124 184 36 31 chr1 101245060 101245364 -180948300 - THE1B LTR MaLR 0 355 1 628 241 29 12 chr1 101245364 101245605 -180948059 + L1M4 LINE L1 2148 2392 -3754 671 224 63 0 chr1 101245623 101245797 -180947867 + L1ME3A LINE L1 5794 5978 -192 657 167 8 8 chr1 101245801 101245933 -180947731 - L1PA12 LINE L1 -5201 2380 2249 21 0 0 0 chr1 101246319 101246340 -180947324 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 101247368 101247392 -180946272 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 101247750 101247779 -180945885 + AT_rich Low_complexity Low_complexity 1 29 0 1368 217 128 21 chr1 101247852 101248346 -180945318 + MLT1F LTR MaLR 1 534 -8 307 339 45 0 chr1 101248942 101249054 -180944610 - L2 LINE L2 -10 3303 3187 1603 196 7 23 chr1 101250522 101250828 -180942836 + AluJo SINE Alu 1 301 -11 849 208 79 0 chr1 101251227 101251405 -180942259 + LTR47A LTR ERVL 261 452 0 320 261 0 0 chr1 101251568 101251633 -180942031 + LOR1-int LTR ERV1 3968 4032 -4088 10394 188 17 15 chr1 101251897 101253726 -180939938 + L1M1 LINE L1 15 1846 -5719 2353 140 34 17 chr1 101253726 101254084 -180939580 - THE1B LTR MaLR 0 364 1 1328 79 6 0 chr1 101254084 101254262 -180939402 - THE1B-int LTR MaLR 0 1580 1402 45027 39 2 2 chr1 101254269 101260417 -180933247 + L1PA3 LINE L1 8 6155 0 22 35 0 0 chr1 101260425 101260454 -180933210 + AT_rich Low_complexity Low_complexity 1 29 0 6807 115 36 4 chr1 101260477 101261629 -180932035 + L1MA3 LINE L1 5106 6295 -10 664 212 95 22 chr1 101261656 101261835 -180931829 + LTR47A LTR ERVL 261 452 0 549 280 70 20 chr1 101262258 101262458 -180931206 - MIR SINE MIR 0 262 53 343 301 123 35 chr1 101262936 101263139 -180930525 + MIR SINE MIR 29 249 -13 371 250 50 50 chr1 101263207 101263327 -180930337 + L2 LINE L2 3193 3312 -1 383 319 155 0 chr1 101264714 101264921 -180928743 + MIR SINE MIR 20 258 -4 1712 167 3 11 chr1 101265764 101266046 -180927618 + AluJb SINE Alu 1 280 -32 396 0 0 0 chr1 101266047 101266091 -180927573 + (CA)n Simple_repeat Simple_repeat 1 44 0 259 325 122 20 chr1 101267578 101267778 -180925886 + MIR SINE MIR 1 219 -43 241 244 64 13 chr1 101267919 101267997 -180925667 + LTR16A1 LTR ERVL 36 117 -340 403 260 10 0 chr1 101268047 101268143 -180925521 + LTR16A1 LTR ERVL 359 455 -2 3113 293 68 16 chr1 101268254 101268511 -180925153 + L1M4b LINE L1 5 247 -6612 3381 141 73 2 chr1 101268511 101269028 -180924636 + MER41C LTR ERV1 1 554 0 3113 293 68 16 chr1 101269028 101269800 -180923864 + L1M4b LINE L1 247 1087 -5772 1209 153 113 29 chr1 101269801 101270104 -180923560 + LTR48 LTR ERV1 9 305 -339 1276 190 86 4 chr1 101270158 101270342 -180923322 - L1M4 LINE L1 -563 5621 5405 3046 87 2 21 chr1 101270342 101270768 -180922896 - L1PA14 LINE L1 -1 6160 5743 1276 190 86 4 chr1 101270768 101270862 -180922802 - L1M4 LINE L1 -779 5405 5320 3330 174 25 37 chr1 101270885 101271536 -180922128 - L1MB2 LINE L1 -30 6377 5735 871 259 29 66 chr1 101271536 101271915 -180921749 - LTR8 LTR ERV1 0 691 327 2392 26 0 0 chr1 101271915 101272180 -180921484 + AluYb8 SINE Alu 48 312 -6 1407 97 5 5 chr1 101272186 101272392 -180921272 + L1P LINE L1 3672 3877 -2269 1380 153 59 118 chr1 101272392 101272765 -180920899 - LTR8A LTR ERV1 -375 352 2 6457 213 41 33 chr1 101272771 101273237 -180920427 - L1MB2 LINE L1 -686 5733 5272 3508 47 0 0 chr1 101273237 101273639 -180920025 - L1PA5 LINE L1 -4 6150 5749 6457 213 41 33 chr1 101273639 101275076 -180918588 - L1MB2 LINE L1 -1147 5272 3814 2889 187 38 8 chr1 101275073 101275987 -180917677 - L1MB2 LINE L1 -3515 2867 1919 * 4208 178 45 36 chr1 101275984 101276849 -180916815 - L1MB2 LINE L1 -5495 889 17 554 175 15 29 chr1 101276858 101276912 -180916752 - L1M4 LINE L1 -816 5330 5277 2588 161 47 5 chr1 101276912 101277321 -180916343 - MSTB LTR MaLR 0 426 1 554 175 15 29 chr1 101277321 101277403 -180916261 - L1M4 LINE L1 -869 5277 5196 214 298 107 25 chr1 101277840 101277961 -180915703 - L2 LINE L2 0 3313 3183 2412 172 38 19 chr1 101278106 101278530 -180915134 + MSTB1 LTR MaLR 1 432 0 271 264 35 23 chr1 101278531 101278618 -180915046 - MIR3 SINE MIR -34 174 87 540 266 182 5 chr1 101278620 101278823 -180914841 - MIR SINE MIR -1 261 23 229 288 0 38 chr1 101279313 101279393 -180914271 - L2 LINE L2 0 3313 3237 2334 107 0 0 chr1 101280577 101280887 -180912777 + AluSg SINE Alu 1 310 0 236 200 40 80 chr1 101280943 101281018 -180912646 + L2 LINE L2 3242 3313 0 2411 64 0 10 chr1 101282432 101282730 -180910934 - AluY SINE Alu -16 295 1 1846 179 0 10 chr1 101282845 101283158 -180910506 + AluJo SINE Alu 1 310 -2 220 278 61 35 chr1 101284120 101284235 -180909429 + L2 LINE L2 3168 3285 -28 928 145 38 170 chr1 101284235 101284331 -180909333 + MER4C LTR ERV1 1 108 -357 7570 33 30 2 chr1 101284331 101285839 -180907825 + L1PA4 LINE L1 4626 6155 0 928 145 38 170 chr1 101285839 101286485 -180907179 + MER4C LTR ERV1 108 460 -5 228 269 9 19 chr1 101287966 101288074 -180905590 + CT-rich Low_complexity Low_complexity 1 107 0 2241 95 0 0 chr1 101289489 101289784 -180903880 - AluSx SINE Alu -4 308 14 1151 265 48 66 chr1 101291839 101292337 -180901327 - MLT1J LTR MaLR 0 511 23 187 336 37 19 chr1 101292379 101292486 -180901178 + MIR SINE MIR 150 258 -4 366 286 0 50 chr1 101293163 101293282 -180900382 - L2 LINE L2 -22 3250 3138 2268 62 0 38 chr1 101293349 101293641 -180900023 + AluY SINE Alu 1 281 -30 293 0 27 0 chr1 101293644 101293681 -180899983 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3201 120 25 34 chr1 101294529 101295108 -180898556 - LTR49 LTR ERV1 -23 599 1 796 253 126 43 chr1 101295282 101295630 -180898034 + L2 LINE L2 2892 3268 -45 2411 111 53 14 chr1 101295672 101296033 -180897631 + THE1C LTR MaLR 1 375 0 380 326 31 31 chr1 101296424 101296620 -180897044 + L2 LINE L2 2660 2855 -459 1418 196 144 32 chr1 101297416 101297793 -180895871 - Charlie2 DNA MER1_type 0 2862 2416 249 33 0 0 chr1 101297793 101297823 -180895841 + (CA)n Simple_repeat Simple_repeat 2 31 0 1418 196 144 32 chr1 101297823 101297939 -180895725 - Charlie2 DNA MER1_type -446 2416 2314 800 235 70 40 chr1 101297960 101298258 -180895406 - Charlie2 DNA MER1_type -728 2134 1828 501 272 7 7 chr1 101298241 101298377 -180895287 - Charlie2 DNA MER1_type -2547 315 180 * 607 187 161 58 chr1 101298678 101298833 -180894831 + FRAM SINE Alu 2 172 -4 324 246 57 33 chr1 101298833 101298955 -180894709 - Charlie2 DNA MER1_type -176 2686 2562 253 310 97 39 chr1 101299443 101299598 -180894066 - MIR SINE MIR -49 213 50 180 369 12 0 chr1 101299681 101299765 -180893899 + MIR SINE MIR 157 241 -21 593 245 119 48 chr1 101299771 101300040 -180893624 - L2 LINE L2 -5 3308 3021 21 36 0 0 chr1 101300149 101300177 -180893487 + AT_rich Low_complexity Low_complexity 1 28 0 183 353 20 29 chr1 101300279 101300381 -180893283 - MIR3 SINE MIR -49 159 59 544 174 73 0 chr1 101300449 101300558 -180893106 + FAM SINE Alu 53 169 -16 1466 221 16 68 chr1 101300604 101300743 -180892921 + MLT1A1 LTR MaLR 1 146 -219 216 0 0 0 chr1 101300743 101300767 -180892897 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2125 114 0 0 chr1 101300769 101301050 -180892614 - AluSx SINE Alu -26 286 6 1466 221 16 68 chr1 101301050 101301292 -180892372 + MLT1A1 LTR MaLR 147 365 0 291 133 0 0 chr1 101301420 101301465 -180892199 + AluSq SINE Alu 138 182 -121 2234 119 3 3 chr1 101301994 101302304 -180891360 - AluSq SINE Alu -3 310 1 28 0 0 0 chr1 101303084 101303112 -180890552 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 101303424 101303452 -180890212 + AT_rich Low_complexity Low_complexity 1 28 0 2847 6 0 0 chr1 101304712 101305023 -180888641 + AluYa5 SINE Alu 1 311 0 240 248 95 131 chr1 101305643 101305780 -180887884 + L2 LINE L2 3167 3298 -15 279 54 0 0 chr1 101305782 101305819 -180887845 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 322 290 181 0 chr1 101305923 101306078 -180887586 + MIR SINE MIR 72 254 -8 2107 142 0 0 chr1 101306783 101307079 -180886585 - AluSx SINE Alu -16 296 1 1790 162 0 27 chr1 101307080 101307377 -180886287 - AluJo SINE Alu -21 291 3 223 308 84 9 chr1 101308681 101308788 -180884876 - MIR SINE MIR -147 115 1 279 240 20 20 chr1 101309253 101309353 -180884311 + L1MC5 LINE L1 7827 7926 -35 228 344 21 43 chr1 101309611 101309704 -180883960 + L3 LINE CR1 1016 1106 -471 1628 196 106 10 chr1 101310173 101310571 -180883093 - MER63B DNA MER1_type 0 436 1 344 205 107 9 chr1 101310571 101310683 -180882981 + L1MC5 LINE L1 7666 7788 -173 225 263 25 0 chr1 101310699 101310779 -180882885 + L1MC4 LINE L1 7960 8041 -1 450 290 91 11 chr1 101312305 101312491 -180881173 - L2 LINE L2 -2 3311 3111 24 32 0 0 chr1 101313079 101313110 -180880554 + AT_rich Low_complexity Low_complexity 1 31 0 281 336 26 0 chr1 101313187 101313303 -180880361 + L2 LINE L2 2258 2376 -938 206 341 24 48 chr1 101314037 101314163 -180879501 + L2 LINE L2 2539 2661 -653 21 0 0 0 chr1 101315207 101315228 -180878436 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 101315512 101315547 -180878117 + AT_rich Low_complexity Low_complexity 1 35 0 186 310 0 117 chr1 101317098 101317243 -180876421 + L2 LINE L2 2630 2757 -557 186 315 51 81 chr1 101317668 101317865 -180875799 + L2 LINE L2 3115 3305 -8 2352 231 31 33 chr1 101319261 101319903 -180873761 + MER21B LTR ERV1 98 738 -125 211 326 79 34 chr1 101320723 101320901 -180872763 - MIR SINE MIR -29 233 48 273 291 184 45 chr1 101321709 101321914 -180871750 - L2 LINE L2 -600 2714 2539 1123 209 104 46 chr1 101321914 101322259 -180871405 - MLT1A1 LTR MaLR 0 365 1 273 291 184 45 chr1 101322259 101322565 -180871099 - L2 LINE L2 -775 2539 2132 1381 147 167 0 chr1 101322647 101322898 -180870766 + AluJo SINE Alu 2 294 -18 354 123 0 0 chr1 101322911 101322968 -180870696 + (CA)n Simple_repeat Simple_repeat 2 58 0 26 0 0 0 chr1 101323042 101323068 -180870596 + AT_rich Low_complexity Low_complexity 1 26 0 347 338 50 35 chr1 101323296 101323494 -180870170 - MIR3 SINE MIR -5 203 3 7828 14 0 0 chr1 101323673 101325182 -180868482 - L1PA2 LINE L1 -2 6153 4643 288 0 0 0 chr1 101325434 101325466 -180868198 + (CA)n Simple_repeat Simple_repeat 2 33 0 1700 179 14 7 chr1 101325757 101326053 -180867611 - AluJb SINE Alu -14 298 1 21 89 0 0 chr1 101326450 101326506 -180867158 + AT_rich Low_complexity Low_complexity 1 56 0 281 105 140 0 chr1 101326518 101326575 -180867089 - L1MB3 LINE L1 -42 6141 6077 537 295 83 46 chr1 101326976 101327193 -180866471 - MIR SINE MIR -3 259 35 237 260 143 50 chr1 101327733 101327853 -180865811 + MIR SINE MIR 50 172 -40 456 288 155 11 chr1 101330781 101331225 -180862439 + L1ME4a LINE L1 5382 5889 -232 245 360 67 12 chr1 101332406 101332570 -180861094 - L3 LINE CR1 -474 1103 931 24 0 0 0 chr1 101332573 101332597 -180861067 + AT_rich Low_complexity Low_complexity 1 24 0 2213 164 10 0 chr1 101332597 101332980 -180860684 - L1PA16 LINE L1 -9 6157 5771 6484 161 35 8 chr1 101332995 101335055 -180858609 - L1PA13 LINE L1 -3 6811 4719 1468 164 19 19 chr1 101335065 101335375 -180858289 - L1PA13 LINE L1 -3373 3424 3115 * 2378 181 4 4 chr1 101335369 101335875 -180857789 - L1PA13 LINE L1 -4241 2556 1996 2497 69 3 0 chr1 101336300 101336604 -180857060 + AluY SINE Alu 1 305 -6 202 187 13 53 chr1 101336646 101336721 -180856943 + (TTTA)n Simple_repeat Simple_repeat 1 72 0 728 282 59 24 chr1 101337146 101337597 -180856067 + MLT1G1 LTR MaLR 71 555 0 784 250 70 5 chr1 101338428 101338724 -180854940 + MLT1H1 LTR MaLR 1 378 -217 402 234 78 64 chr1 101339653 101339794 -180853870 - MER5B DNA MER1_type -35 143 1 718 257 22 6 chr1 101339804 101339987 -180853677 + MER5A DNA MER1_type 3 188 -1 311 339 35 41 chr1 101341277 101341448 -180852216 + MIR SINE MIR 47 216 -46 485 181 12 0 chr1 101342678 101342761 -180850903 + AluJ/FLAM SINE Alu 1 84 -228 564 340 154 32 chr1 101343157 101343755 -180849909 - L3 LINE CR1 -12 1565 895 1860 108 87 31 chr1 101344291 101344578 -180849086 + AluSg SINE Alu 1 303 -7 530 210 118 0 chr1 101345390 101345534 -180848130 + FLAM_C SINE Alu 1 158 0 307 283 43 0 chr1 101348225 101348317 -180845347 + MIR SINE MIR 157 252 -10 1220 113 5 16 chr1 101348934 101349120 -180844544 + AluSc SINE Alu 126 309 0 932 218 0 0 chr1 101349407 101349572 -180844092 - MER5A DNA MER1_type -18 171 7 24 53 0 0 chr1 101349653 101349691 -180843973 + AT_rich Low_complexity Low_complexity 1 38 0 291 310 154 62 chr1 101350138 101350573 -180843091 + L3 LINE CR1 1100 1574 -3 1784 116 4 0 chr1 101350591 101350833 -180842831 + AluSg SINE Alu 58 300 -10 591 277 105 88 chr1 101350967 101351490 -180842174 - LTR67 LTR ERVL -1 556 25 463 222 40 0 chr1 101351581 101351680 -180841984 + MER103 DNA DNA 57 159 -7 243 277 201 31 chr1 101352064 101352098 -180841566 - MIR3 SINE MIR -7 201 174 1143 194 99 73 chr1 101352098 101352470 -180841194 + MER58D DNA MER1_type 4 385 -1 243 277 201 31 chr1 101352470 101352594 -180841070 - MIR3 SINE MIR -34 174 16 227 266 25 38 chr1 101353073 101353152 -180840512 + MER117 DNA MER1_type 70 147 -50 1218 150 50 0 chr1 101354139 101354339 -180839325 + MER20 DNA MER1_type 3 212 -7 267 303 92 25 chr1 101354351 101354470 -180839194 + L2 LINE L2 3144 3270 -2 22 0 0 0 chr1 101355399 101355421 -180838243 + AT_rich Low_complexity Low_complexity 1 22 0 2262 100 0 10 chr1 101356372 101356673 -180836991 + AluSx SINE Alu 1 298 -14 25 75 0 0 chr1 101357350 101357403 -180836261 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr1 101359777 101359806 -180833858 + AT_rich Low_complexity Low_complexity 1 29 0 353 286 151 5 chr1 101364639 101364845 -180828819 - MIR SINE MIR -1 261 26 192 278 14 69 chr1 101365258 101365330 -180828334 - MIR3 SINE MIR -132 76 9 189 286 36 0 chr1 101365396 101365452 -180828212 - MIR3 SINE MIR -41 167 110 275 282 199 39 chr1 101365473 101365679 -180827985 - MIR SINE MIR -15 247 9 184 370 14 14 chr1 101365683 101365756 -180827908 - MIR SINE MIR -113 95 23 266 268 183 0 chr1 101367915 101367997 -180825667 + MIR SINE MIR 47 143 -65 253 324 48 48 chr1 101368002 101368107 -180825557 - L2 LINE L2 -5 3267 3163 219 308 39 0 chr1 101368112 101368190 -180825474 + MIR SINE MIR 161 241 -21 409 289 88 81 chr1 101368248 101368532 -180825132 + L2 LINE L2 2914 3199 -73 210 341 46 64 chr1 101369304 101369477 -180824187 + L2 LINE L2 2909 3078 -194 550 271 23 0 chr1 101369869 101369998 -180823666 - MIR SINE MIR -121 141 10 429 194 16 62 chr1 101370072 101370201 -180823463 + MIR3 SINE MIR 82 204 -4 409 289 31 44 chr1 101371045 101371204 -180822460 + MIR SINE MIR 7 163 -99 537 333 16 21 chr1 101371332 101371518 -180822146 + MIR SINE MIR 22 206 -56 1973 191 16 24 chr1 101371572 101371948 -180821716 + MLT1A2 LTR MaLR 1 373 -1 7388 160 66 55 chr1 101372284 101373819 -180819845 - MER52A LTR ERV1 0 1755 204 253 259 0 0 chr1 101374109 101374167 -180819497 - MER52A LTR ERV1 -1697 58 1 506 341 46 0 chr1 101374378 101374551 -180819113 + MIR SINE MIR 60 240 -22 473 259 135 18 chr1 101375254 101375424 -180818240 - MIR SINE MIR -16 246 57 226 293 17 0 chr1 101375461 101375519 -180818145 + MIR SINE MIR 169 227 -35 2048 130 0 3 chr1 101375834 101376135 -180817529 + AluSg SINE Alu 1 300 -10 1470 196 39 0 chr1 101376472 101376784 -180816880 + MER33 DNA MER1_type 1 324 0 333 0 0 0 chr1 101376963 101377000 -180816664 + (A)n Simple_repeat Simple_repeat 1 37 0 1368 176 58 8 chr1 101377230 101377491 -180816173 - AluJb SINE Alu -34 278 5 1481 249 141 20 chr1 101377495 101378383 -180815281 + L2 LINE L2 2313 3313 0 2100 125 0 0 chr1 101378407 101378695 -180814969 + AluSx SINE Alu 1 288 -24 225 213 68 66 chr1 101378703 101378830 -180814834 - MIR SINE MIR -133 129 3 186 320 164 8 chr1 101380031 101380159 -180813505 + MIR SINE MIR 32 179 -83 1741 265 62 69 chr1 101380896 101381616 -180812048 - MER21B LTR ERV1 -148 715 1 74 86 0 0 chr1 101382613 101382799 -180810865 + AT_rich Low_complexity Low_complexity 1 186 0 632 283 11 5 chr1 101383037 101383221 -180810443 - MIR SINE MIR 0 262 78 1827 184 54 40 chr1 101383259 101383613 -180810051 - MLT1A1 LTR MaLR -4 361 3 21 0 0 0 chr1 101383859 101383880 -180809784 + AT_rich Low_complexity Low_complexity 1 21 0 2316 54 7 34 chr1 101384458 101384756 -180808908 + AluY SINE Alu 1 290 -21 785 285 8 48 chr1 101385429 101385616 -180808048 + MIR SINE MIR 19 195 -67 2537 44 0 3 chr1 101385616 101385913 -180807751 - AluY SINE Alu -15 296 1 785 285 8 48 chr1 101385913 101385974 -180807690 + MIR SINE MIR 195 257 -5 378 61 0 0 chr1 101386432 101386481 -180807183 + (CA)n Simple_repeat Simple_repeat 2 50 0 29 47 0 0 chr1 101386522 101386565 -180807099 + AT_rich Low_complexity Low_complexity 1 43 0 2329 101 0 0 chr1 101386721 101387018 -180806646 + AluY SINE Alu 1 297 -14 1815 249 79 22 chr1 101387154 101387645 -180806019 - LTR40a LTR ERVL 0 519 1 571 233 23 8 chr1 101388088 101388217 -180805447 + MER103 DNA DNA 1 131 -35 506 288 32 48 chr1 101388528 101388708 -180804956 - MIR3 SINE MIR -37 171 12 2255 239 33 92 chr1 101389564 101390241 -180803423 - MER21B LTR ERV1 -57 806 176 432 0 0 0 chr1 101390241 101390289 -180803375 + (CA)n Simple_repeat Simple_repeat 2 49 0 2255 239 33 92 chr1 101390289 101390364 -180803300 - MER21B LTR ERV1 -687 176 98 355 219 0 73 chr1 101390485 101390581 -180803083 - MER21B LTR ERV1 -774 89 1 642 320 25 5 chr1 101390928 101391131 -180802533 + MIR SINE MIR 12 218 -44 953 178 141 0 chr1 101391139 101391324 -180802340 + MER46A DNA MER2_type 26 236 0 892 165 49 6 chr1 101391498 101391662 -180802002 - MER39 LTR ERV1 0 707 537 747 237 11 11 chr1 101391667 101391844 -180801820 - AluJo SINE Alu -9 303 127 2197 144 100 31 chr1 101391844 101392295 -180801369 - MER39B LTR ERV1 -171 482 1 350 335 60 37 chr1 101392937 101393155 -180800509 - L2 LINE L2 -40 3232 3010 1779 93 86 43 chr1 101393157 101393435 -180800229 + AluSx SINE Alu 1 290 -22 236 179 103 51 chr1 101393557 101393635 -180800029 - MIR SINE MIR -74 188 107 195 237 0 0 chr1 101394187 101394225 -180799439 - MER5A DNA MER1_type -1 188 151 295 253 121 0 chr1 101394401 101394500 -180799164 - MIR SINE MIR 0 262 152 21 71 0 0 chr1 101396260 101396302 -180797362 + GC_rich Low_complexity Low_complexity 1 42 0 25 65 0 0 chr1 101397898 101397944 -180795720 + AT_rich Low_complexity Low_complexity 1 46 0 181 351 149 7 chr1 101398684 101398832 -180794832 - MIR SINE MIR -48 214 46 561 314 80 0 chr1 101399291 101399517 -180794147 + MIR SINE MIR 4 247 -15 297 130 0 0 chr1 101400042 101400088 -180793576 - Alu SINE Alu -255 46 1 25 31 0 0 chr1 101400100 101400132 -180793532 + AT_rich Low_complexity Low_complexity 1 32 0 572 210 68 49 chr1 101401826 101401988 -180791676 - MER106A DNA MER1_type -71 165 1 2020 108 0 25 chr1 101402442 101402773 -180790891 - AluSc SINE Alu 0 324 1 409 235 49 29 chr1 101403131 101403233 -180790431 + L2 LINE L2 3150 3253 -19 21 0 0 0 chr1 101403426 101403447 -180790217 + AT_rich Low_complexity Low_complexity 1 21 0 2057 140 0 0 chr1 101403558 101403850 -180789814 - AluSg SINE Alu -18 292 1 23 0 0 0 chr1 101404370 101404393 -180789271 + AT_rich Low_complexity Low_complexity 1 23 0 2248 114 0 10 chr1 101405920 101406055 -180787609 + AluSx SINE Alu 1 136 -176 2349 96 0 0 chr1 101406055 101406356 -180787308 + AluSg1 SINE Alu 1 301 -8 2248 114 0 10 chr1 101406356 101406526 -180787138 + AluSx SINE Alu 136 303 -9 1613 195 34 0 chr1 101406571 101406869 -180786795 - AluJb SINE Alu -4 308 1 1721 277 97 48 chr1 101407575 101407653 -180786011 + L1ME LINE L1 19 92 -5988 1555 173 81 3 chr1 101407653 101407936 -180785728 - AluSg SINE Alu -3 307 3 1721 277 97 48 chr1 101407936 101409178 -180784486 + L1ME LINE L1 92 1353 -4727 1079 247 71 58 chr1 101409194 101409446 -180784218 + L1ME LINE L1 2701 2948 -3132 261 0 0 0 chr1 101409446 101409475 -180784189 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 1079 247 71 58 chr1 101409475 101409881 -180783783 + L1ME LINE L1 2948 3368 -2712 1030 195 152 74 chr1 101409924 101410371 -180783293 + L1ME LINE L1 3729 4210 -1870 1566 138 4 28 chr1 101411317 101411570 -180782094 + AluJo SINE Alu 50 296 -16 2303 214 52 11 chr1 101412066 101412628 -180781036 - L1MB7 LINE L1 -9 6175 5591 1392 191 146 5 chr1 101413705 101414108 -180779556 - LTR37B LTR ERV1 0 468 9 409 308 47 28 chr1 101414644 101414774 -180778890 + MER58C DNA MER1_type 1 138 -2282 2473 79 0 0 chr1 101414774 101415078 -180778586 + AluY SINE Alu 1 304 -7 409 308 47 28 chr1 101415078 101415158 -180778506 + MER58C DNA MER1_type 138 215 0 589 251 236 13 chr1 101416354 101416637 -180777027 - L2 LINE L2 -293 3020 2673 632 193 172 6 chr1 101416649 101417014 -180776650 - Charlie1b DNA MER1_type -12 511 48 1197 282 41 13 chr1 101417036 101417344 -180776320 - L2 LINE L2 -660 2654 2331 2968 129 21 74 chr1 101417344 101417911 -180775753 + L1PB4 LINE L1 5617 6153 -3 1197 282 41 13 chr1 101417911 101417989 -180775675 - L2 LINE L2 -983 2331 2257 1136 246 115 52 chr1 101418003 101418362 -180775302 - HAL1 LINE L1 -800 1707 1291 844 174 0 0 chr1 101418362 101418494 -180775170 - FLAM_A SINE Alu -1 132 1 1136 246 115 52 chr1 101418494 101418751 -180774913 - HAL1 LINE L1 -1216 1291 1052 229 286 43 0 chr1 101418752 101418822 -180774842 - HAL1 LINE L1 -1485 1022 950 226 256 11 33 chr1 101418876 101418966 -180774698 - HAL1 LINE L1 -1589 918 831 1019 173 41 65 chr1 101418968 101419265 -180774399 - MSTD LTR MaLR 0 396 66 446 240 101 21 chr1 101419314 101419497 -180774167 - MLT1J LTR MaLR -242 269 34 351 310 35 18 chr1 101420446 101420559 -180773105 - MIR SINE MIR -147 115 1 2243 113 3 0 chr1 101420947 101421247 -180772417 + AluSg SINE Alu 1 301 -9 306 0 0 0 chr1 101422548 101422582 -180771082 + (TG)n Simple_repeat Simple_repeat 1 34 0 417 343 60 9 chr1 101422782 101422998 -180770666 + MIR SINE MIR 12 238 -24 196 315 96 68 chr1 101423265 101423484 -180770180 - L2 LINE L2 -40 3232 3008 680 171 74 74 chr1 101423771 101423947 -180769717 - MER5B DNA MER1_type -1 177 2 180 77 0 0 chr1 101424467 101424493 -180769171 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1065 242 46 125 chr1 101425020 101425493 -180768171 - L2 LINE L2 -10 3303 2909 1341 130 54 22 chr1 101425493 101425716 -180767948 + MER30 DNA MER1_type 1 230 0 1065 242 46 125 chr1 101425716 101426079 -180767585 - L2 LINE L2 -404 2909 2519 11059 81 14 1 chr1 101426264 101426729 -180766935 - L1PA7 LINE L1 -1 6153 5696 2549 54 0 0 chr1 101426729 101427027 -180766637 + AluY SINE Alu 1 298 -13 11059 81 14 1 chr1 101427027 101427535 -180766129 - L1PA7 LINE L1 -458 5696 5196 207 0 0 0 chr1 101427535 101427558 -180766106 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11059 81 14 1 chr1 101427558 101428890 -180764774 - L1PA7 LINE L1 -958 5196 3833 3999 144 46 7 chr1 101428890 101429589 -180764075 + Tigger3(Golem) DNA MER2_type 2303 3028 -1 721 68 3 52 chr1 101429723 101429871 -180763793 + L1PA5 LINE L1 6023 6151 -4 952 264 23 83 chr1 101430203 101430590 -180763074 - L2 LINE L2 -1 3312 2949 * 968 261 96 20 chr1 101430579 101430935 -180762729 + L2 LINE L2 2125 2507 -807 471 303 118 5 chr1 101432088 101432283 -180761381 + MIR SINE MIR 22 238 -24 2443 133 43 14 chr1 101432446 101432891 -180760773 + L1MB1 LINE L1 5708 6165 -3 690 272 85 17 chr1 101432958 101433193 -180760471 - MIR SINE MIR -2 260 10 844 120 0 73 chr1 101434485 101434635 -180759029 - FRAM SINE Alu -4 172 34 221 333 12 0 chr1 101434721 101434802 -180758862 + GA-rich Low_complexity Low_complexity 3 84 0 402 298 26 33 chr1 101435779 101435930 -180757734 + L2 LINE L2 3164 3313 0 204 345 48 12 chr1 101435933 101436017 -180757647 - L2 LINE L2 -39 3233 3147 261 0 0 0 chr1 101436223 101436252 -180757412 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 600 301 36 98 chr1 101437095 101437431 -180756233 - L2 LINE L2 0 3272 2958 207 0 0 0 chr1 101438635 101438658 -180755006 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 531 297 50 11 chr1 101440990 101441172 -180752492 + MIR3 SINE MIR 9 197 -11 480 236 0 93 chr1 101441695 101441856 -180751808 - L2 LINE L2 -3 3310 3165 2200 120 3 0 chr1 101441859 101442168 -180751496 + AluSp SINE Alu 1 310 -3 1629 210 118 59 chr1 101442179 101442712 -180750952 - L2 LINE L2 -800 2514 1943 2122 139 0 0 chr1 101442712 101443015 -180750649 + AluSx SINE Alu 1 303 -9 1629 210 118 59 chr1 101443015 101443056 -180750608 - L2 LINE L2 -1371 1943 1906 2506 60 0 13 chr1 101443515 101443817 -180749847 - AluY SINE Alu -13 298 1 2167 148 0 0 chr1 101443990 101444301 -180749363 - AluSx SINE Alu -1 311 1 2516 91 37 0 chr1 101444902 101445253 -180748411 - THE1B LTR MaLR 0 364 1 230 243 29 14 chr1 101445258 101445328 -180748336 + (CATATA)n Simple_repeat Simple_repeat 3 73 0 2372 55 0 0 chr1 101445353 101445628 -180748036 + AluY SINE Alu 18 292 -19 4993 166 82 84 chr1 101445916 101446803 -180746861 + Charlie1a DNA MER1_type 4 887 -1874 2218 100 10 0 chr1 101446803 101447094 -180746570 - AluSc SINE Alu -15 294 1 4993 166 82 84 chr1 101447094 101447662 -180746002 + Charlie1a DNA MER1_type 887 1455 0 239 369 0 0 chr1 101447886 101447970 -180745694 - L2 LINE L2 -4 3268 3185 2767 10 10 10 chr1 101448543 101448855 -180744809 - AluYb8 SINE Alu -6 312 1 801 252 81 16 chr1 101451308 101451554 -180742110 - MIR SINE MIR 0 262 1 925 252 45 45 chr1 101451642 101452023 -180741641 - L2 LINE L2 0 3313 2933 1646 255 189 11 chr1 101452613 101453048 -180740616 - L2 LINE L2 -377 2937 2374 2326 103 0 0 chr1 101453048 101453349 -180740315 + AluSx SINE Alu 1 301 -11 1646 255 189 11 chr1 101453349 101453485 -180740179 - L2 LINE L2 -940 2374 2264 231 289 100 22 chr1 101454446 101454536 -180739128 - L2 LINE L2 -8 3264 3168 287 221 57 55 chr1 101454794 101454921 -180738743 + MER20B DNA MER1_type 68 198 -21 402 278 128 22 chr1 101454965 101455145 -180738519 - MIR SINE MIR -62 200 2 23 33 0 0 chr1 101455273 101455303 -180738361 + AT_rich Low_complexity Low_complexity 1 30 0 2241 123 7 0 chr1 101457036 101457345 -180736319 - AluSx SINE Alu -1 311 1 724 197 0 0 chr1 101457840 101457972 -180735692 - FLAM_A SINE Alu -1 132 1 1956 108 22 14 chr1 101457972 101458249 -180735415 - AluSx SINE Alu -5 307 29 2381 81 7 0 chr1 101458314 101458611 -180735053 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 101459102 101459123 -180734541 + AT_rich Low_complexity Low_complexity 1 21 0 187 345 163 7 chr1 101459180 101459313 -180734351 + MIR SINE MIR 41 190 -53 181 207 17 17 chr1 101459856 101459914 -180733750 + GA-rich Low_complexity Low_complexity 1 58 0 235 216 0 0 chr1 101461733 101461784 -180731880 - L2 LINE L2 -1 3312 3262 2827 153 24 32 chr1 101462402 101462956 -180730708 + L1MC1 LINE L1 5785 6333 0 496 138 0 0 chr1 101463837 101463917 -180729747 + MADE1 DNA Mariner 1 80 0 861 149 0 0 chr1 101464399 101464520 -180729144 + FLAM_C SINE Alu 11 131 -12 2521 70 0 16 chr1 101464584 101464900 -180728764 + AluY SINE Alu 1 311 0 321 330 0 66 chr1 101464900 101465006 -180728658 + L1MC4a LINE L1 5484 5582 -2226 1674 138 0 90 chr1 101465842 101466154 -180727510 + AluJo SINE Alu 1 284 -28 443 311 106 45 chr1 101466161 101466521 -180727143 + L1M4 LINE L1 1274 1761 -4873 314 334 76 18 chr1 101466540 101466881 -180726783 + HAL1 LINE L1 1403 1763 -744 21 0 0 0 chr1 101466892 101466913 -180726751 + AT_rich Low_complexity Low_complexity 1 21 0 533 241 88 35 chr1 101467489 101467727 -180725937 - L1ME1 LINE L1 -63 6120 5861 261 291 50 21 chr1 101467752 101467893 -180725771 + L1MC4a LINE L1 5765 5909 -1899 6801 19 0 0 chr1 101468050 101468825 -180724839 + L1PA3 LINE L1 5380 6154 -1 252 0 0 0 chr1 101468844 101468872 -180724792 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1197 153 28 14 chr1 101468886 101469102 -180724562 + AluJb SINE Alu 1 219 -93 336 283 155 32 chr1 101469280 101469531 -180724133 + L1M4 LINE L1 4383 4664 -1482 2403 93 0 0 chr1 101470588 101470889 -180722775 + AluSg SINE Alu 1 301 -9 327 25 0 0 chr1 101471097 101471137 -180722527 + (TG)n Simple_repeat Simple_repeat 2 41 0 294 87 0 0 chr1 101472032 101472078 -180721586 + (GAA)n Simple_repeat Simple_repeat 1 46 0 482 230 59 53 chr1 101472661 101472813 -180720851 + MIR SINE MIR 13 165 -97 556 320 58 0 chr1 101472829 101473001 -180720663 - MER91A DNA MER1_type -11 185 4 2512 62 0 0 chr1 101473203 101473512 -180720152 - AluY SINE Alu -2 309 1 195 210 48 32 chr1 101473631 101473693 -180719971 + MIR SINE MIR 156 218 -44 363 262 69 0 chr1 101473782 101473927 -180719737 + Charlie7 DNA MER1_type 1 155 -2457 466 253 18 24 chr1 101474332 101474480 -180719184 + MIR SINE MIR 50 199 -63 209 321 0 0 chr1 101474654 101474710 -180718954 - L2 LINE L2 -10 3303 3248 2226 119 0 0 chr1 101475576 101475869 -180717795 - AluSq SINE Alu -20 293 1 32 43 0 0 chr1 101478573 101478619 -180715045 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr1 101479210 101479250 -180714414 + AT_rich Low_complexity Low_complexity 1 40 0 2055 140 30 3 chr1 101479450 101479785 -180713879 - MER2 DNA MER2_type 0 344 1 2655 13 3 3 chr1 101485508 101485833 -180707831 + AluYa5 SINE Alu 1 325 0 199 362 53 59 chr1 101486443 101486595 -180707069 + L2 LINE L2 3102 3252 -20 1974 160 120 17 chr1 101486689 101487107 -180706557 - MLT1C LTR MaLR -6 461 1 1718 247 87 24 chr1 101487293 101487884 -180705780 - MLT1G LTR MaLR 0 590 1 208 217 102 96 chr1 101489829 101489986 -180703678 + L2 LINE L2 2597 2754 -560 302 300 50 10 chr1 101490055 101490155 -180703509 + MIR SINE MIR 23 126 -136 401 339 85 0 chr1 101490445 101490610 -180703054 + MIR SINE MIR 47 225 -37 186 261 22 0 chr1 101490707 101490753 -180702911 - MIR SINE MIR -9 253 207 205 314 105 91 chr1 101490886 101491316 -180702348 - L2 LINE L2 -5 3267 2832 247 306 120 23 chr1 101493104 101493273 -180700391 + L1ME4a LINE L1 5778 5982 -139 2272 118 0 0 chr1 101493273 101493579 -180700085 + AluSx SINE Alu 1 306 -6 247 306 120 23 chr1 101493579 101493667 -180699997 + L1ME4a LINE L1 5982 6060 -61 52 50 0 0 chr1 101493864 101493944 -180699720 + AT_rich Low_complexity Low_complexity 1 80 0 446 291 78 74 chr1 101494244 101494515 -180699149 - L2 LINE L2 -4 3268 2997 756 163 70 35 chr1 101494752 101494924 -180698740 + LTR47A LTR ERVL 275 452 0 727 140 205 0 chr1 101495025 101495196 -180698468 + MER3 DNA MER1_type 1 206 -3 4947 144 45 1 chr1 101495440 101496440 -180697224 + L1PA16 LINE L1 5124 6161 -5 1317 268 56 25 chr1 101496571 101497298 -180696366 + L1ME4a LINE L1 5359 6117 -4 219 197 13 26 chr1 101498017 101498093 -180695571 + GA-rich Low_complexity Low_complexity 2 76 0 201 147 0 0 chr1 101499020 101499054 -180694610 + (CA)n Simple_repeat Simple_repeat 1 34 0 930 268 65 22 chr1 101499277 101499739 -180693925 + L1ME4a LINE L1 5584 6065 -56 567 279 84 15 chr1 101500175 101500388 -180693276 + MIR SINE MIR 3 226 -36 345 191 73 0 chr1 101500515 101500583 -180693081 + L2 LINE L2 3241 3313 0 6769 110 60 60 chr1 101500736 101501966 -180691698 - Tigger3b DNA MER2_type -1 1230 1 861 141 190 58 chr1 101502132 101502374 -180691290 - ORSL DNA AcHobo 0 275 2 549 186 16 24 chr1 101503443 101503567 -180690097 + L1MC1 LINE L1 6211 6333 0 193 213 43 0 chr1 101503888 101503950 -180689714 + MIR SINE MIR 103 167 -95 541 193 109 25 chr1 101503975 101504094 -180689570 - FLAM_C SINE Alu -4 129 1 720 260 29 53 chr1 101504108 101504389 -180689275 + L2 LINE L2 3038 3311 -2 2711 229 43 65 chr1 101504695 101505500 -180688164 - MER21B LTR ERV1 -58 805 18 441 218 0 0 chr1 101505518 101505596 -180688068 - MER21B LTR ERV1 -773 90 13 213 229 82 16 chr1 101505631 101505692 -180687972 - MER91A DNA MER1_type -1 195 131 305 297 103 35 chr1 101505703 101505848 -180687816 - MER91A DNA MER1_type -41 155 1 708 210 22 0 chr1 101506172 101506310 -180687354 + MLT2F LTR ERVL 1 141 -522 515 145 24 0 chr1 101506434 101506517 -180687147 - MLT1A2 LTR MaLR -289 85 1 2132 134 3 10 chr1 101507885 101508199 -180685465 - AluSx SINE Alu 0 312 1 252 310 100 0 chr1 101508203 101508303 -180685361 - L2 LINE L2 -1 3312 3203 375 270 30 0 chr1 101508946 101509046 -180684618 - L3 LINE CR1 -2 1575 1473 484 306 124 8 chr1 101509493 101509735 -180683929 - L3 LINE CR1 -143 1434 1165 198 288 50 25 chr1 101509754 101509834 -180683830 - MIR3 SINE MIR -25 183 102 1036 306 37 29 chr1 101509951 101510432 -180683232 - L3 LINE CR1 -414 1163 679 281 234 59 17 chr1 101510478 101510566 -180683098 + MLT1I LTR MaLR 72 160 -249 43994 30 22 1 chr1 101510572 101516598 -180677066 - L1PA2 LINE L1 0 6155 3 502 126 34 50 chr1 101516778 101516897 -180676767 + L1MA8 LINE L1 6145 6261 -30 245 154 39 0 chr1 101516898 101516950 -180676714 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 2159 96 0 57 chr1 101516960 101517274 -180676390 - AluSq SINE Alu -17 296 1 23 33 0 0 chr1 101517277 101517307 -180676357 + AT_rich Low_complexity Low_complexity 1 30 0 296 276 87 8 chr1 101517352 101517479 -180676185 - L2 LINE L2 -556 2758 2622 227 407 44 0 chr1 101517478 101517613 -180676051 + L3 LINE CR1 280 420 -1157 * 230 317 132 58 chr1 101517669 101517912 -180675752 + L2 LINE L2 2843 3103 -169 1144 163 60 23 chr1 101518271 101518486 -180675178 + MER58A DNA MER1_type 1 223 -1 512 172 107 8 chr1 101519148 101519270 -180674394 + MLT1B LTR MaLR 1 134 -256 529 286 81 26 chr1 101519494 101519728 -180673936 - MIR SINE MIR 0 262 16 2128 133 0 3 chr1 101519948 101520248 -180673416 - AluJb SINE Alu -13 299 1 1763 226 104 45 chr1 101523337 101524018 -180669646 + L1ME3 LINE L1 4583 5303 -843 1807 194 43 3 chr1 101524018 101524369 -180669295 + MLT1A1 LTR MaLR 1 365 0 322 242 40 30 chr1 101524455 101524554 -180669110 - MER5A DNA MER1_type -39 150 51 189 319 44 44 chr1 101524457 101524592 -180669072 + MER5A DNA MER1_type 50 184 -5 * 2303 116 0 0 chr1 101524634 101524936 -180668728 + AluSx SINE Alu 2 303 -9 233 173 19 19 chr1 101526141 101526193 -180667471 + (CA)n Simple_repeat Simple_repeat 2 53 0 270 366 0 0 chr1 101527406 101527507 -180666157 + MIR SINE MIR 162 262 0 1007 288 85 30 chr1 101527618 101528073 -180665591 + L2 LINE L2 2565 3040 -273 1658 149 33 30 chr1 101528073 101528374 -180665290 + AluJb SINE Alu 1 302 -10 1007 288 85 30 chr1 101528374 101528479 -180665185 + L2 LINE L2 3040 3138 -175 522 208 23 17 chr1 101528495 101528653 -180665011 + L1ME3 LINE L1 5468 5629 -562 29 60 0 0 chr1 101528709 101528759 -180664905 + AT_rich Low_complexity Low_complexity 1 50 0 696 238 70 8 chr1 101528847 101529091 -180664573 + L1ME3 LINE L1 5727 5985 -177 443 262 134 86 chr1 101529329 101529680 -180663984 + MLT1L LTR MaLR 12 379 -236 376 228 40 10 chr1 101529739 101529840 -180663824 + MLT1L LTR MaLR 507 610 -5 3818 236 75 27 chr1 101530252 101530455 -180663209 + MER69 DNA AcHobo 4 196 -2330 2035 132 0 29 chr1 101530455 101530765 -180662899 - AluSx SINE Alu -11 301 1 3818 236 75 27 chr1 101530765 101531634 -180662030 + MER69 DNA AcHobo 196 1127 -1399 340 139 25 219 chr1 101531631 101531756 -180661908 + MER69 DNA AcHobo 2278 2337 -189 * 425 234 0 28 chr1 101531756 101531863 -180661801 - U13 snRNA snRNA 0 104 1 340 139 25 219 chr1 101531863 101531974 -180661690 + MER69 DNA AcHobo 2337 2468 -58 366 216 62 21 chr1 101532007 101532104 -180661560 + MER69 DNA AcHobo 2426 2526 0 2431 92 0 0 chr1 101534543 101534847 -180658817 + AluSq SINE Alu 1 304 -9 1892 169 3 0 chr1 101535200 101535495 -180658169 + AluJb SINE Alu 2 297 -15 286 284 45 0 chr1 101536103 101536191 -180657473 - L2 LINE L2 -26 3246 3155 446 280 32 25 chr1 101536459 101536616 -180657048 + L2 LINE L2 3156 3313 0 2056 125 3 19 chr1 101537963 101538276 -180655388 - AluSx SINE Alu -4 308 1 259 364 47 8 chr1 101538513 101538550 -180655114 + L2 LINE L2 3139 3173 -99 2320 189 21 35 chr1 101538550 101539062 -180654602 + MLT1D LTR MaLR 1 505 0 259 364 47 8 chr1 101539062 101539153 -180654511 + L2 LINE L2 3173 3272 0 2464 163 54 10 chr1 101539186 101539556 -180654108 - L1MB4 LINE L1 0 6180 5783 396 0 0 0 chr1 101539556 101539600 -180654064 + (TG)n Simple_repeat Simple_repeat 2 45 0 2464 163 54 10 chr1 101539600 101539714 -180653950 - L1MB4 LINE L1 -397 5783 5675 762 0 31 0 chr1 101539742 101539840 -180653824 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 585 0 50 0 chr1 101539888 101539968 -180653696 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1990 162 20 28 chr1 101539981 101540376 -180653288 - L1MB4 LINE L1 -509 5671 5280 * 6682 37 0 0 chr1 101540345 101541124 -180652540 - L1PA3 LINE L1 -2 6153 5375 421 234 48 0 chr1 101541105 101541250 -180652414 - L1M4 LINE L1 -822 5324 5173 * 2232 102 24 0 chr1 101541290 101541583 -180652081 - AluSc SINE Alu -9 300 1 1477 208 87 37 chr1 101541681 101542052 -180651612 + L1ME3 LINE L1 5703 6101 -61 198 0 0 0 chr1 101542052 101542074 -180651590 + (TG)n Simple_repeat Simple_repeat 2 23 0 1477 208 87 37 chr1 101542074 101542139 -180651525 + L1ME3 LINE L1 6101 6161 -1 2427 92 3 0 chr1 101542307 101542612 -180651052 + AluSq SINE Alu 1 306 -7 2437 81 3 0 chr1 101543572 101543868 -180649796 - AluSc SINE Alu -12 297 1 1543 181 60 7 chr1 101544453 101544734 -180648930 - AluJb SINE Alu -16 296 1 671 231 0 0 chr1 101544759 101544880 -180648784 + FLAM_A SINE Alu 1 121 -12 1360 199 136 49 chr1 101545092 101545518 -180648146 - MER21B LTR ERV1 -21 842 380 811 253 87 1 chr1 101545548 101545805 -180647859 - MER21B LTR ERV1 -553 310 12 311 224 0 0 chr1 101546304 101546362 -180647302 - MIR SINE MIR -2 260 203 584 257 28 11 chr1 101546376 101546555 -180647109 - L2 LINE L2 0 3313 3132 3616 110 57 6 chr1 101546557 101547135 -180646529 - LTR38B LTR ERV1 0 611 1 895 264 95 60 chr1 101547247 101547430 -180646234 - L2 LINE L2 -358 2956 2781 1923 155 10 3 chr1 101547430 101547727 -180645937 + AluJb SINE Alu 1 299 -13 895 264 95 60 chr1 101547727 101547910 -180645754 - L2 LINE L2 -533 2781 2577 954 275 69 18 chr1 101547910 101548114 -180645550 - LTR16A LTR ERVL -17 433 241 1575 179 137 66 chr1 101548114 101548582 -180645082 - MLT1D LTR MaLR -4 501 1 954 275 69 18 chr1 101548582 101548766 -180644898 - LTR16A LTR ERVL -209 241 25 367 277 162 0 chr1 101548791 101548939 -180644725 - L2 LINE L2 -751 2563 2392 516 260 27 14 chr1 101548944 101549090 -180644574 - MIR SINE MIR -63 199 52 759 222 54 6 chr1 101549363 101549530 -180644134 + AluJb SINE Alu 122 296 -16 2374 98 0 0 chr1 101549532 101549827 -180643837 + AluSc SINE Alu 1 295 -14 605 289 18 80 chr1 101550194 101550581 -180643083 - MLT1J LTR MaLR -18 493 131 279 219 86 57 chr1 101550571 101550676 -180642988 - MLT1L LTR MaLR -506 109 2 * 2099 222 39 34 chr1 101550731 101551267 -180642397 - MER44D DNA MER2_type 0 605 12 496 170 0 62 chr1 101551409 101551521 -180642143 + MIR SINE MIR 46 150 -112 1270 181 80 43 chr1 101551541 101551867 -180641797 + MER2 DNA MER2_type 8 345 0 22 0 0 0 chr1 101551908 101551930 -180641734 + AT_rich Low_complexity Low_complexity 1 22 0 476 309 74 17 chr1 101552158 101552388 -180641276 + MIR SINE MIR 14 256 -6 1841 169 0 7 chr1 101552717 101553012 -180640652 + AluJb SINE Alu 3 295 -17 387 0 0 0 chr1 101553105 101553148 -180640516 + (CA)n Simple_repeat Simple_repeat 1 43 0 817 172 8 0 chr1 101553308 101553436 -180640228 - AluJo SINE Alu -178 134 6 225 214 0 0 chr1 101554375 101554417 -180639247 - L2 LINE L2 -1 3271 3230 29 28 0 0 chr1 101554537 101554573 -180639091 + AT_rich Low_complexity Low_complexity 1 36 0 655 275 106 49 chr1 101554880 101555352 -180638312 + MLT1J LTR MaLR 1 499 -12 1953 203 42 75 chr1 101555518 101555894 -180637770 + MLT1F LTR MaLR 42 429 -113 3946 156 30 14 chr1 101555894 101555968 -180637696 + L1MA9 LINE L1 5543 5614 -698 2254 126 128 8 chr1 101555968 101556350 -180637314 - MSTA LTR MaLR 0 428 1 3946 156 30 14 chr1 101556350 101556522 -180637142 + L1MA9 LINE L1 5614 5782 -530 1953 135 3 29 chr1 101556522 101556833 -180636831 + AluSx SINE Alu 2 304 -8 3946 156 30 14 chr1 101556833 101557196 -180636468 + L1MA9 LINE L1 5782 6170 -142 258 105 0 0 chr1 101557196 101557234 -180636430 + (CA)n Simple_repeat Simple_repeat 1 38 0 3946 156 30 14 chr1 101557234 101557361 -180636303 + L1MA9 LINE L1 6170 6293 -19 1953 203 42 75 chr1 101557361 101557502 -180636162 + MLT1F LTR MaLR 429 542 0 2076 112 11 4 chr1 101558207 101558484 -180635180 - AluSc SINE Alu -30 279 1 209 255 196 20 chr1 101558576 101558678 -180634986 - L2 LINE L2 -2 3270 3151 7587 38 0 0 chr1 101558934 101560073 -180633591 - L1PA6 LINE L1 -11 6143 5005 701 149 113 7 chr1 101560492 101560633 -180633031 + MLT1C LTR MaLR 6 161 -306 7703 109 27 53 chr1 101560638 101562002 -180631662 - SVA Other Other 0 1386 85 318 62 0 0 chr1 101562002 101562050 -180631614 + AluSp/q SINE Alu 256 303 0 300 169 183 0 chr1 101564037 101564108 -180629556 + MER5A DNA MER1_type 9 92 -97 2069 127 0 3 chr1 101564358 101564662 -180629002 - AluSx SINE Alu 0 303 1 288 306 14 0 chr1 101565031 101565103 -180628561 - MIR SINE MIR -100 108 36 1553 203 3 3 chr1 101566521 101566821 -180626843 + AluJo SINE Alu 1 300 -12 308 214 22 0 chr1 101566929 101567018 -180626646 - MIR SINE MIR 0 262 172 2076 121 0 10 chr1 101567172 101567462 -180626202 - AluSx SINE Alu -17 295 9 399 305 17 0 chr1 101567589 101567707 -180625957 - MIR SINE MIR -59 149 30 327 335 12 12 chr1 101567739 101567900 -180625764 - MIR3 SINE MIR -4 204 44 198 103 0 0 chr1 101567920 101567949 -180625715 + (GAA)n Simple_repeat Simple_repeat 2 30 0 404 255 49 0 chr1 101568547 101568649 -180625015 - MIR SINE MIR -72 190 84 207 0 0 0 chr1 101568805 101568828 -180624836 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 404 349 34 11 chr1 101569098 101569273 -180624391 - MER5A DNA MER1_type 0 189 11 256 337 31 0 chr1 101570064 101570162 -180623502 - L2 LINE L2 -8 3264 3164 681 253 42 21 chr1 101570493 101570597 -180623067 - MIR SINE MIR -32 230 119 1240 181 5 168 chr1 101570597 101570771 -180622893 + MLT1A2 LTR MaLR 1 59 -315 1779 169 17 0 chr1 101570771 101571061 -180622603 + AluJo SINE Alu 1 295 -17 1240 181 5 168 chr1 101571061 101571333 -180622331 + MLT1A2 LTR MaLR 59 374 0 681 253 42 21 chr1 101571333 101571418 -180622246 - MIR SINE MIR -143 119 37 200 302 103 9 chr1 101571716 101571832 -180621832 - L3 LINE CR1 -2 1575 1449 189 0 0 0 chr1 101573409 101573430 -180620234 + (CCA)n Simple_repeat Simple_repeat 3 23 0 189 268 113 84 chr1 101574752 101574894 -180618770 + L2 LINE L2 3117 3262 -10 479 238 63 16 chr1 101575295 101575421 -180618243 - Charlie8 DNA MER1_type -2276 141 10 2989 185 16 30 chr1 101575671 101576233 -180617431 - MLT2B3 LTR ERVL 0 554 1 2354 88 3 3 chr1 101577179 101577476 -180616188 + AluSp SINE Alu 1 297 -16 655 216 121 44 chr1 101577693 101577966 -180615698 - L2 LINE L2 0 3313 3020 2112 237 221 16 chr1 101577978 101578839 -180614825 - L2 LINE L2 -499 2815 1779 217 257 29 43 chr1 101578840 101578910 -180614754 - L2 LINE L2 -1797 1517 1449 813 152 0 36 chr1 101579024 101579162 -180614502 - FLAM_C SINE Alu 0 133 1 941 178 25 30 chr1 101579479 101579676 -180613988 + AluJo SINE Alu 87 282 -30 244 0 56 0 chr1 101579679 101579715 -180613949 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 431 151 82 94 chr1 101580041 101580200 -180613464 - MIR SINE MIR -10 252 96 193 282 167 0 chr1 101580428 101580506 -180613158 - L2 LINE L2 -30 3283 3193 488 301 84 15 chr1 101580669 101580872 -180612792 + MIR SINE MIR 8 224 -38 1709 182 24 48 chr1 101581230 101581533 -180612131 + MLT1A1 LTR MaLR 1 295 -70 2320 106 0 0 chr1 101581533 101581834 -180611830 - AluSx SINE Alu -11 301 1 1709 182 24 48 chr1 101581834 101581904 -180611760 + MLT1A1 LTR MaLR 295 365 0 756 261 73 92 chr1 101581923 101582552 -180611112 - L1ME4a LINE L1 0 6121 5505 2189 116 0 0 chr1 101582680 101582981 -180610683 - AluSg SINE Alu -9 301 1 21 0 0 0 chr1 101582981 101583002 -180610662 + AT_rich Low_complexity Low_complexity 1 21 0 210 143 0 0 chr1 101584527 101584562 -180609102 + (CCG)n Simple_repeat Simple_repeat 2 36 0 22 70 0 0 chr1 101584648 101584691 -180608973 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 101585259 101585280 -180608384 + GC_rich Low_complexity Low_complexity 1 21 0 299 307 204 53 chr1 101586098 101586724 -180606940 - L3 LINE CR1 -109 1468 748 294 298 99 7 chr1 101587812 101587851 -180605813 - MIR3 SINE MIR -5 203 169 315 0 0 0 chr1 101587851 101587886 -180605778 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2303 41 45 0 chr1 101587889 101588157 -180605507 - AluY SINE Alu -31 280 1 294 298 99 7 chr1 101588157 101588254 -180605410 - MIR3 SINE MIR -40 168 50 2250 92 24 0 chr1 101588674 101588967 -180604697 + AluSx SINE Alu 1 300 -12 235 125 0 83 chr1 101589114 101589162 -180604502 + L2 LINE L2 3188 3231 -82 206 244 167 0 chr1 101589351 101589429 -180604235 + L2 LINE L2 3210 3300 -13 475 222 70 76 chr1 101589510 101589681 -180603983 + MER5B DNA MER1_type 7 176 -2 485 266 74 15 chr1 101590859 101591062 -180602602 - MIR SINE MIR -2 260 46 23 0 0 0 chr1 101591098 101591121 -180602543 + AT_rich Low_complexity Low_complexity 1 23 0 763 202 65 0 chr1 101592264 101592432 -180601232 - Charlie8 DNA MER1_type -2212 205 27 2446 89 0 0 chr1 101592509 101592811 -180600853 - AluSx SINE Alu -10 302 1 464 199 139 111 chr1 101594465 101594681 -180598983 - MIR SINE MIR -21 241 20 221 286 2 28 chr1 101595121 101595205 -180598459 + MIR SINE MIR 13 96 -112 341 288 29 36 chr1 101595996 101596135 -180597529 - MIR SINE MIR -78 184 47 188 311 61 61 chr1 101596460 101596624 -180597040 - L2 LINE L2 -429 2885 2722 269 232 36 80 chr1 101596685 101596823 -180596841 + MER5A DNA MER1_type 32 163 -26 207 337 43 0 chr1 101596861 101596953 -180596711 - L2 LINE L2 -1040 2274 2179 524 204 238 6 chr1 101597214 101597395 -180596269 + MIR SINE MIR 21 243 -19 758 170 77 46 chr1 101599090 101599284 -180594380 + MIR SINE MIR 15 214 -48 1784 136 9 57 chr1 101599680 101599997 -180593667 + AluJb SINE Alu 1 302 -10 230 305 172 20 chr1 101600359 101600510 -180593154 + MIR3 SINE MIR 24 197 -11 1113 214 56 10 chr1 101602491 101602844 -180590820 - L1MCa LINE L1 -3947 2479 2202 266 220 28 92 chr1 101602882 101602949 -180590715 + L1ME4a LINE L1 5946 6001 -120 2398 86 10 3 chr1 101602949 101603252 -180590412 + AluSp SINE Alu 1 305 -8 266 220 28 92 chr1 101603252 101603325 -180590339 + L1ME4a LINE L1 6001 6077 -44 248 303 98 33 chr1 101603782 101603904 -180589760 + MIR SINE MIR 62 191 -71 251 367 108 22 chr1 101603969 101604430 -180589234 + L2 LINE L2 2148 2648 -666 232 361 57 61 chr1 101604572 101604979 -180588685 + L2 LINE L2 2839 3243 -29 2169 118 3 7 chr1 101605652 101605957 -180587707 + AluSx SINE Alu 2 305 -7 201 196 0 0 chr1 101606359 101606410 -180587254 + A-rich Low_complexity Low_complexity 1 51 0 2742 117 43 43 chr1 101606678 101607184 -180586480 + L1PA13 LINE L1 5657 6162 -1 603 239 28 23 chr1 101607358 101607534 -180586130 - MLT1A2 LTR MaLR -197 177 1 270 297 47 0 chr1 101607538 101607602 -180586062 + L2 LINE L2 3003 3069 -244 228 219 104 21 chr1 101607662 101607758 -180585906 - MLT1F LTR MaLR -166 376 273 1248 159 30 0 chr1 101607842 101608043 -180585621 + AluJo SINE Alu 76 282 -30 2242 111 0 7 chr1 101608043 101608350 -180585314 - AluSx SINE Alu -7 305 1 462 309 7 15 chr1 101608553 101608689 -180584975 + L2 LINE L2 3179 3313 0 450 260 58 51 chr1 101608763 101608955 -180584709 - MIR SINE MIR -50 212 26 1578 165 3 62 chr1 101609573 101609882 -180583782 - AluJo SINE Alu -21 291 1 588 194 61 0 chr1 101609896 101610061 -180583603 - MER45B DNA AcHobo -92 948 774 1580 78 0 28 chr1 101610061 101610278 -180583386 + AluSg SINE Alu 1 211 -99 1792 180 70 143 chr1 101611499 101611656 -180582008 + LTR8A LTR ERV1 1 168 -559 829 121 0 57 chr1 101611656 101611797 -180581867 - FLAM_C SINE Alu 0 133 1 1792 180 70 143 chr1 101611797 101612402 -180581262 + LTR8A LTR ERV1 168 707 -20 2191 100 0 7 chr1 101613002 101613293 -180580371 + AluSq SINE Alu 2 290 -23 30 45 0 0 chr1 101613682 101613726 -180579938 + AT_rich Low_complexity Low_complexity 1 44 0 2320 96 0 0 chr1 101615532 101615825 -180577839 + AluSc SINE Alu 1 293 -16 225 0 0 0 chr1 101615841 101615866 -180577798 + (TA)n Simple_repeat Simple_repeat 2 26 0 245 293 98 51 chr1 101616000 101616215 -180577449 + L3 LINE CR1 1321 1545 -32 476 170 0 0 chr1 101616399 101616493 -180577171 - MER117 DNA MER1_type -50 147 54 2335 106 0 0 chr1 101616517 101616820 -180576844 + AluSg SINE Alu 1 303 -7 261 331 106 0 chr1 101617340 101617482 -180576182 + L2 LINE L2 2155 2311 -1003 328 279 200 0 chr1 101617525 101617690 -180575974 - MIR SINE MIR -35 227 30 244 333 21 10 chr1 101621380 101621476 -180572188 - MIR3 SINE MIR -14 194 98 378 325 86 7 chr1 101621870 101622021 -180571643 - MIR SINE MIR -89 173 11 874 263 19 5 chr1 101622348 101622553 -180571111 + MIR SINE MIR 49 256 -6 203 365 61 22 chr1 101623656 101623886 -180569778 + L2 LINE L2 2395 2633 -681 409 333 135 51 chr1 101624061 101624454 -180569210 + L2 LINE L2 2844 3269 -3 270 0 0 0 chr1 101624600 101624630 -180569034 + (TA)n Simple_repeat Simple_repeat 1 30 0 1355 183 72 64 chr1 101626265 101626669 -180566995 - L1MB8 LINE L1 0 6178 5772 566 141 0 0 chr1 101626663 101626762 -180566902 - L1MB2 LINE L1 -51 6120 6022 * 1154 131 52 40 chr1 101626754 101627006 -180566658 - L1MB8 LINE L1 -398 5786 5532 323 115 0 0 chr1 101627009 101627061 -180566603 - L1MB8 LINE L1 -747 5431 5380 694 262 86 13 chr1 101627834 101628067 -180565597 - MIR SINE MIR 0 262 13 2138 142 0 0 chr1 101628166 101628475 -180565189 - AluSx SINE Alu -3 309 1 3579 109 47 16 chr1 101628528 101629101 -180564563 + L1P LINE L1 1261 1856 -4290 2220 116 0 0 chr1 101629101 101629393 -180564271 + AluSg SINE Alu 6 297 -13 3579 109 47 16 chr1 101629393 101629431 -180564233 + L1P LINE L1 1856 1891 -4255 2263 105 0 7 chr1 101629464 101629769 -180563895 + AluSc SINE Alu 2 304 -5 201 74 0 0 chr1 101631130 101631157 -180562507 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 486 315 15 13 chr1 101633507 101633665 -180559999 + MIR3 SINE MIR 10 170 -38 342 0 0 0 chr1 101633712 101633750 -180559914 + (TG)n Simple_repeat Simple_repeat 1 38 0 449 285 119 32 chr1 101634615 101634868 -180558796 - L2 LINE L2 0 3313 3039 240 325 52 0 chr1 101634901 101634978 -180558686 + L2 LINE L2 3187 3267 -5 684 205 108 0 chr1 101634991 101635157 -180558507 - MIR SINE MIR -5 257 74 542 284 15 0 chr1 101635552 101635686 -180557978 + MER5A DNA MER1_type 6 141 -48 848 230 26 0 chr1 101635925 101636116 -180557548 + MER58A DNA MER1_type 22 217 -7 568 198 15 86 chr1 101636139 101636336 -180557328 + MER3 DNA MER1_type 27 209 0 719 227 92 0 chr1 101636548 101636733 -180556931 + MIR SINE MIR 61 262 0 2441 83 0 3 chr1 101637951 101638253 -180555411 + AluSq SINE Alu 1 301 -12 277 341 0 0 chr1 101638596 101638684 -180554980 + L3 LINE CR1 1315 1402 -175 25 51 0 0 chr1 101638974 101639013 -180554651 + AT_rich Low_complexity Low_complexity 1 39 0 207 273 0 15 chr1 101639292 101639358 -180554306 - MIR SINE MIR 0 262 198 1378 242 116 24 chr1 101640499 101640957 -180552707 - L2 LINE L2 -1844 1470 971 327 343 20 0 chr1 101641469 101641568 -180552096 - L2 LINE L2 -8 3264 3164 185 311 39 39 chr1 101641742 101641845 -180551819 - L2 LINE L2 -34 3238 3136 181 222 93 0 chr1 101641930 101641984 -180551680 + L2 LINE L2 3214 3272 0 848 193 19 6 chr1 101642315 101642476 -180551188 + FAM SINE Alu 1 163 -12 195 100 0 0 chr1 101642479 101642509 -180551155 + (TG)n Simple_repeat Simple_repeat 2 31 0 369 267 113 50 chr1 101643843 101644064 -180549600 + MIR SINE MIR 13 247 -15 183 333 89 30 chr1 101644444 101644579 -180549085 + L2 LINE L2 2824 2966 -306 2044 127 39 0 chr1 101646645 101646929 -180546735 - AluSx SINE Alu -17 295 1 2151 100 10 10 chr1 101646981 101647282 -180546382 - AluSp SINE Alu -12 301 1 219 315 105 25 chr1 101647552 101647714 -180545950 - MIR SINE MIR -68 194 20 809 196 14 48 chr1 101651505 101651714 -180541950 + MER20 DNA MER1_type 1 202 -17 244 183 160 30 chr1 101652782 101652913 -180540751 + L1ME4a LINE L1 5969 6116 -5 220 271 17 0 chr1 101653192 101653251 -180540413 + MIR SINE MIR 182 241 -21 212 290 16 32 chr1 101653291 101653353 -180540311 + L2 LINE L2 3208 3268 -4 458 305 176 26 chr1 101653354 101653770 -180539894 - L3 LINE CR1 -410 1167 690 7358 174 69 10 chr1 101654005 101655598 -180538066 + L1MC3 LINE L1 6072 7785 0 1911 152 0 3 chr1 101655612 101655914 -180537750 + AluJb SINE Alu 3 303 -9 2362 97 0 3 chr1 101655916 101656227 -180537437 + AluY SINE Alu 1 310 -1 3442 198 53 11 chr1 101656606 101656883 -180536781 - L1MC4a LINE L1 0 7808 7544 2283 88 7 0 chr1 101656883 101657189 -180536475 - AluY SINE Alu -3 308 1 3442 198 53 11 chr1 101657189 101657665 -180535999 - L1MC4a LINE L1 -264 7544 7023 181 237 17 34 chr1 101657721 101657780 -180535884 - MIR SINE MIR 0 262 205 250 306 71 0 chr1 101657955 101658040 -180535624 + L2 LINE L2 3177 3267 -5 786 297 161 31 chr1 101658121 101658527 -180535137 - L3 LINE CR1 -606 971 492 2346 80 7 7 chr1 101658527 101658829 -180534835 - AluY SINE Alu -9 302 1 786 297 161 31 chr1 101658829 101658900 -180534764 - L3 LINE CR1 -1085 492 432 800 284 210 3 chr1 101658986 101659348 -180534316 - L2 LINE L2 0 3313 2877 391 130 101 14 chr1 101659979 101660048 -180533616 + MLT1A1 LTR MaLR 1 75 -299 1244 218 35 11 chr1 101660148 101660432 -180533232 + MLT1A1 LTR MaLR 75 365 0 436 296 49 0 chr1 101662419 101662561 -180531103 - MIR3 SINE MIR -27 181 33 242 164 18 0 chr1 101662842 101662897 -180530767 + CT-rich Low_complexity Low_complexity 2 57 0 314 328 45 45 chr1 101662971 101663148 -180530516 - MIR SINE MIR 0 262 86 364 289 239 11 chr1 101664472 101664652 -180529012 - MIR SINE MIR -13 249 29 * 424 286 19 26 chr1 101664649 101664803 -180528861 + L3 LINE CR1 1270 1422 -155 278 229 0 0 chr1 101664824 101664885 -180528779 - L1MB7 LINE L1 -10 6174 6114 204 293 0 52 chr1 101664891 101664949 -180528715 + L3 LINE CR1 1417 1471 -106 381 299 18 54 chr1 101665190 101665357 -180528307 + MER5B DNA MER1_type 17 177 -1 22 0 0 0 chr1 101665954 101665976 -180527688 + AT_rich Low_complexity Low_complexity 1 22 0 231 324 39 0 chr1 101666287 101666389 -180527275 + MIR SINE MIR 87 192 -70 195 222 0 0 chr1 101667346 101667391 -180526273 + (CA)n Simple_repeat Simple_repeat 2 46 0 2334 92 0 10 chr1 101669078 101669383 -180524281 + AluSc SINE Alu 1 302 -7 26 0 0 0 chr1 101669549 101669575 -180524089 + AT_rich Low_complexity Low_complexity 1 26 0 209 32 0 32 chr1 101669577 101669608 -180524056 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1754 153 0 38 chr1 101669613 101669901 -180523763 - AluJo SINE Alu -31 281 5 653 203 0 60 chr1 101670153 101670286 -180523378 + FLAM_A SINE Alu 2 126 -7 1972 172 94 41 chr1 101671035 101671663 -180522001 + MER39 LTR ERV1 1 707 0 1501 131 0 0 chr1 101671912 101672133 -180521531 - AluSg/x SINE Alu -8 304 84 243 310 53 26 chr1 101672394 101672507 -180521157 + MIR SINE MIR 106 221 -41 438 331 60 69 chr1 101672508 101672855 -180520809 - L2 LINE L2 -19 3253 2910 488 312 53 12 chr1 101673845 101674015 -180519649 + MIR3 SINE MIR 12 188 -20 25 0 0 0 chr1 101674277 101674302 -180519362 + AT_rich Low_complexity Low_complexity 1 25 0 2302 70 43 3 chr1 101675108 101675407 -180518257 - AluY SINE Alu 0 311 1 790 283 39 4 chr1 101675545 101675778 -180517886 - MIR SINE MIR -17 245 5 288 321 46 46 chr1 101677312 101677443 -180516221 + MIR SINE MIR 47 177 -85 232 237 13 53 chr1 101679530 101679606 -180514058 - MER5A DNA MER1_type -92 97 25 2304 105 7 0 chr1 101679767 101680073 -180513591 - AluSx SINE Alu -4 308 1 207 0 0 0 chr1 101680685 101680708 -180512956 + (ATG)n Simple_repeat Simple_repeat 1 23 0 329 319 151 22 chr1 101680849 101681031 -180512633 - MIR SINE MIR -50 212 8 279 104 0 0 chr1 101681726 101681774 -180511890 + (TG)n Simple_repeat Simple_repeat 2 49 0 2593 60 0 0 chr1 101682301 101682603 -180511061 + AluY SINE Alu 1 302 -9 441 317 47 25 chr1 101683319 101683517 -180510147 + MIR SINE MIR 12 214 -48 621 303 148 25 chr1 101684425 101684825 -180508839 + L2 LINE L2 1869 2317 -997 259 336 29 15 chr1 101684891 101685028 -180508636 + L2 LINE L2 2619 2757 -557 232 194 78 97 chr1 101685126 101685229 -180508435 + MER92C LTR ERV1 62 162 -392 367 155 0 0 chr1 101685296 101685354 -180508310 + MER92C LTR ERV1 497 554 0 223 248 18 26 chr1 101685382 101685495 -180508169 + (TTATA)n Simple_repeat Simple_repeat 4 115 0 303 267 33 11 chr1 101685659 101685749 -180507915 - MLT1J LTR MaLR -40 471 380 415 239 66 99 chr1 101685762 101685998 -180507666 - MLT1J LTR MaLR -183 269 68 411 41 0 0 chr1 101686901 101686950 -180506714 - pTR5 LTR ERV1 -2046 392 344 * 1134 200 0 39 chr1 101686948 101687228 -180506436 - pTR5 LTR ERV1 -1415 1023 755 711 143 126 0 chr1 101687460 101687579 -180506085 - AluJo SINE Alu -177 135 2 263 211 113 14 chr1 101687684 101687733 -180505931 + L2 LINE L2 3151 3210 -62 394 18 36 0 chr1 101687733 101687788 -180505876 + (TG)n Simple_repeat Simple_repeat 2 58 0 263 211 113 14 chr1 101687788 101687809 -180505855 + L2 LINE L2 3210 3228 -44 212 316 32 110 chr1 101689642 101689797 -180503867 - MIR SINE MIR -113 149 7 236 277 80 89 chr1 101689927 101690140 -180503524 + L2 LINE L2 2543 2753 -561 687 264 48 0 chr1 101690420 101690587 -180503077 - MER69A DNA AcHobo 0 177 3 240 371 61 8 chr1 101690651 101690783 -180502881 + L2 LINE L2 3134 3272 0 253 167 14 69 chr1 101690999 101691071 -180502593 - MIR SINE MIR 0 262 195 282 190 157 50 chr1 101691647 101691768 -180501896 - L2 LINE L2 0 3313 3180 24 0 0 0 chr1 101692521 101692545 -180501119 + AT_rich Low_complexity Low_complexity 1 24 0 1819 125 96 7 chr1 101693798 101694079 -180499585 + AluJb SINE Alu 1 306 -6 258 0 71 0 chr1 101694231 101694273 -180499391 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1974 135 4 0 chr1 101694279 101694560 -180499104 - AluSx SINE Alu -30 282 1 181 265 24 84 chr1 101694670 101694753 -180498911 - MIR SINE MIR -165 97 20 2114 111 0 17 chr1 101694783 101695081 -180498583 - AluSq SINE Alu -20 293 1 216 267 17 33 chr1 101695277 101695337 -180498327 - L2 LINE L2 -4 3268 3210 621 162 0 0 chr1 101695569 101695674 -180497990 - L1MB8 LINE L1 -2 6176 6072 5672 118 31 25 chr1 101696188 101697702 -180495962 + L1PA16 LINE L1 4529 6058 -108 3805 136 8 0 chr1 101697702 101698223 -180495441 + MER1A DNA MER1_type 3 527 0 5672 118 31 25 chr1 101698223 101698315 -180495349 + L1PA16 LINE L1 6058 6148 -18 294 333 93 46 chr1 101698715 101698968 -180494696 + L2 LINE L2 2892 3169 -144 458 88 176 0 chr1 101698968 101699036 -180494628 - MADE1 DNA Mariner 0 80 1 294 333 93 46 chr1 101699036 101699148 -180494516 + L2 LINE L2 3169 3274 -39 280 253 71 30 chr1 101699364 101699463 -180494201 + MIR SINE MIR 90 192 -70 198 303 155 39 chr1 101699542 101699697 -180493967 + MIR SINE MIR 20 192 -70 1590 229 33 8 chr1 101700092 101700458 -180493206 - L1ME3A LINE L1 -342 5828 5454 263 274 55 14 chr1 101700698 101700771 -180492893 - L2 LINE L2 -57 3215 3140 2155 100 0 7 chr1 101700787 101701087 -180492577 - AluSx SINE Alu -14 298 1 531 341 100 32 chr1 101701759 101702128 -180491536 - L2 LINE L2 -18 3254 2861 602 173 48 0 chr1 101702331 101702435 -180491229 - Tigger3(Golem) DNA MER2_type 0 3038 2930 2192 151 6 29 chr1 101702521 101702866 -180490798 + MER1B DNA MER1_type 1 337 0 2023 118 11 0 chr1 101702928 101703198 -180490466 - AluSx SINE Alu -29 283 11 460 176 0 0 chr1 101703205 101703273 -180490391 - Tigger3(Golem) DNA MER2_type -2960 69 2 216 0 0 0 chr1 101703720 101703744 -180489920 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 101703912 101703933 -180489731 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 101703975 101703996 -180489668 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr1 101704330 101704353 -180489311 + AT_rich Low_complexity Low_complexity 1 23 0 3147 161 26 58 chr1 101705144 101705324 -180488340 + L1MB7 LINE L1 5104 5288 -896 1384 174 68 64 chr1 101705324 101705438 -180488226 + AluJb SINE Alu 1 113 -199 207 0 0 0 chr1 101705438 101705461 -180488203 + (TATTG)n Simple_repeat Simple_repeat 2 24 0 1384 174 68 64 chr1 101705461 101705657 -180488007 + AluJb SINE Alu 113 312 0 3147 161 26 58 chr1 101705657 101705896 -180487768 + L1MB7 LINE L1 5288 5533 -651 2294 87 28 0 chr1 101705896 101706184 -180487480 + AluSc SINE Alu 2 297 -12 3147 161 26 58 chr1 101706184 101706569 -180487095 + L1MB7 LINE L1 5533 5886 -298 3794 192 79 29 chr1 101706585 101707386 -180486278 - MER21B LTR ERV1 -11 852 12 826 221 47 16 chr1 101707406 101707596 -180486068 + L1MB7 LINE L1 5881 6076 -108 617 165 41 8 chr1 101707590 101707711 -180485953 + L1MB8 LINE L1 6017 6141 -37 * 233 176 162 0 chr1 101707731 101707799 -180485865 + L1MB8 LINE L1 6092 6170 -8 2110 32 0 0 chr1 101707854 101708101 -180485563 - L1P LINE L1 -2136 4010 3764 8233 20 2 1 chr1 101708101 101709203 -180484461 + L1PA3 LINE L1 5053 6155 0 229 320 48 10 chr1 101709259 101709362 -180484302 + L3 LINE CR1 563 669 -908 354 267 167 0 chr1 101709366 101709486 -180484178 + LTR33 LTR ERVL 20 159 -362 215 298 0 0 chr1 101709907 101709954 -180483710 + L3 LINE CR1 1051 1097 -480 312 374 97 13 chr1 101710378 101710533 -180483131 - MIR3 SINE MIR -16 192 25 354 192 64 104 chr1 101710745 101710839 -180482825 - L2 LINE L2 -4 3309 3220 2089 111 10 10 chr1 101710839 101711136 -180482528 + AluSg SINE Alu 1 297 -13 354 192 64 104 chr1 101711136 101711166 -180482498 - L2 LINE L2 -93 3220 3190 1910 214 93 59 chr1 101711225 101711681 -180481983 + MLT1F LTR MaLR 1 479 -63 2346 109 3 0 chr1 101711681 101711992 -180481672 - AluSx SINE Alu 0 312 1 1910 214 93 59 chr1 101711992 101712059 -180481605 + MLT1F LTR MaLR 479 542 0 1411 43 0 0 chr1 101712298 101712462 -180481202 + AluY SINE Alu 144 307 -4 1037 245 135 30 chr1 101712774 101713137 -180480527 + MLT1I LTR MaLR 5 405 -4 2345 200 77 39 chr1 101713202 101713464 -180480200 + LTR48B LTR ERV1 1 251 -393 2315 64 0 58 chr1 101713464 101713792 -180479872 + AluSg1 SINE Alu 1 309 0 2345 200 77 39 chr1 101713792 101714149 -180479515 + LTR48B LTR ERV1 251 644 0 343 297 168 20 chr1 101714194 101714396 -180479268 - MIR SINE MIR -29 233 2 187 350 57 24 chr1 101714630 101714753 -180478911 - MIR SINE MIR -38 224 98 2249 96 3 7 chr1 101714790 101715083 -180478581 + AluSp SINE Alu 1 292 -21 1511 168 44 54 chr1 101715183 101715481 -180478183 - AluJo SINE Alu -13 299 5 1307 231 120 24 chr1 101715580 101715956 -180477708 + MER20B DNA MER1_type 82 493 -290 2370 100 3 0 chr1 101716048 101716358 -180477306 - AluSp SINE Alu -2 311 1 2382 95 0 0 chr1 101716792 101717088 -180476576 + AluSx SINE Alu 1 296 -16 419 221 23 46 chr1 101717088 101717219 -180476445 + MER20B DNA MER1_type 518 645 -138 325 243 14 14 chr1 101717219 101717289 -180476375 - MER81 DNA DNA -44 70 1 27 0 0 0 chr1 101717332 101717359 -180476305 + AT_rich Low_complexity Low_complexity 1 27 0 276 310 71 32 chr1 101717384 101717539 -180476125 + MIR SINE MIR 102 262 0 2302 133 44 3 chr1 101717825 101718192 -180475472 + MLT1B LTR MaLR 1 382 -8 386 275 60 70 chr1 101718443 101718643 -180475021 - L2 LINE L2 -2 3311 3114 514 332 20 81 chr1 101718674 101718972 -180474692 - L2 LINE L2 -5 3267 2988 1732 168 24 10 chr1 101719780 101720072 -180473592 + AluJb SINE Alu 1 296 -16 1575 189 33 10 chr1 101720358 101720659 -180473005 - AluJo SINE Alu -4 308 1 2078 88 64 17 chr1 101721341 101721636 -180472028 + AluSc SINE Alu 1 309 0 365 252 8 34 chr1 101721950 101722069 -180471595 + MIR SINE MIR 97 212 -50 235 269 109 31 chr1 101724047 101724196 -180469468 - L1ME4a LINE L1 -152 5969 5833 2135 114 17 0 chr1 101724196 101724486 -180469178 - AluJo SINE Alu -6 306 12 235 269 109 31 chr1 101724486 101724592 -180469072 - L1ME4a LINE L1 -288 5833 5694 2219 88 7 3 chr1 101724635 101724930 -180468734 - AluSq SINE Alu -17 296 1 2324 54 4 0 chr1 101725007 101725284 -180468380 + AluSp SINE Alu 1 278 -35 2028 246 52 30 chr1 101725341 101725684 -180467980 - L1ME1 LINE L1 -5 6161 5827 1505 157 89 32 chr1 101725684 101725965 -180467699 - AluJb SINE Alu -8 304 8 2028 246 52 30 chr1 101725965 101726491 -180467173 - L1ME1 LINE L1 -339 5827 5243 2290 109 3 0 chr1 101726497 101726808 -180466856 - AluSx SINE Alu 0 312 1 688 207 14 0 chr1 101726844 101726984 -180466680 - L1ME1 LINE L1 -864 5282 5141 2095 107 0 10 chr1 101727227 101727516 -180466148 - AluSg SINE Alu -14 296 11 1911 85 85 11 chr1 101728369 101728652 -180465012 - AluSx SINE Alu -8 304 1 1917 53 148 11 chr1 101729171 101729434 -180464230 - AluSg1 SINE Alu -10 299 1 226 145 0 130 chr1 101729473 101729542 -180464122 + MIR SINE MIR 74 133 -129 1979 148 7 3 chr1 101730277 101730580 -180463084 - AluSx SINE Alu -8 304 1 2588 194 27 42 chr1 101730602 101731222 -180462442 - L1MC3 LINE L1 -1 7784 7174 1498 100 5 5 chr1 101731222 101731442 -180462222 - pTR5 LTR ERV1 -2047 391 172 302 224 31 20 chr1 101731445 101731543 -180462121 - LTR30 LTR ERV1 -80 642 544 4277 130 123 39 chr1 101731543 101732517 -180461147 - pTR5 LTR ERV1 -413 2025 743 228 233 117 89 chr1 101732851 101733031 -180460633 + HAL1 LINE L1 2255 2439 -68 213 39 0 0 chr1 101733367 101733393 -180460271 + (A)n Simple_repeat Simple_repeat 1 26 0 210 311 67 33 chr1 101733829 101733919 -180459745 + MER5B DNA MER1_type 84 176 -2 912 174 47 29 chr1 101734209 101734381 -180459283 - AluJb SINE Alu -2 310 136 279 306 116 50 chr1 101734919 101735040 -180458624 - L2 LINE L2 -5 3267 3139 349 291 8 24 chr1 101735153 101735280 -180458384 - 7SK RNA RNA -64 129 5 288 214 167 12 chr1 101735773 101735857 -180457807 + MIR SINE MIR 71 167 -95 875 235 39 13 chr1 101735937 101736171 -180457493 + MIR SINE MIR 23 262 0 1969 107 16 13 chr1 101736475 101736785 -180456879 + AluY SINE Alu 1 311 0 416 318 98 9 chr1 101737147 101737361 -180456303 - L2 LINE L2 -204 3068 2836 251 268 0 0 chr1 101737757 101737813 -180455851 + L2 LINE L2 3258 3313 0 25 51 0 0 chr1 101738639 101738678 -180454986 + AT_rich Low_complexity Low_complexity 1 39 0 1993 153 3 3 chr1 101739680 101739975 -180453689 + AluJo SINE Alu 1 295 -17 180 0 0 0 chr1 101740240 101740260 -180453404 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 720 242 88 23 chr1 101742043 101742258 -180451406 + MIR SINE MIR 19 247 -15 462 227 93 113 chr1 101742279 101742377 -180451287 + MLT1J LTR MaLR 6 104 -407 688 194 16 31 chr1 101742377 101742506 -180451158 + FLAM_A SINE Alu 1 127 -6 1895 144 7 3 chr1 101742508 101742807 -180450857 + AluJb SINE Alu 1 300 -12 462 227 93 113 chr1 101742807 101742952 -180450712 + MLT1J LTR MaLR 105 247 -264 241 204 82 0 chr1 101743071 101743120 -180450544 + MLT1J LTR MaLR 418 470 -41 391 259 171 25 chr1 101743158 101743316 -180450348 + MER5A DNA MER1_type 9 189 0 2067 99 0 18 chr1 101743992 101744275 -180449389 + AluSx SINE Alu 35 312 0 322 287 78 0 chr1 101744341 101744470 -180449194 - L3b LINE CR1 -237 1346 1208 2017 138 7 0 chr1 101744732 101745023 -180448641 + AluSx SINE Alu 1 293 -19 219 313 146 0 chr1 101745117 101745213 -180448451 - MIR SINE MIR -113 149 40 * 247 329 110 18 chr1 101745189 101745353 -180448311 - MIR SINE MIR -39 223 45 516 219 205 7 chr1 101745939 101746090 -180447574 + MER5A DNA MER1_type 9 189 0 499 306 128 47 chr1 101746102 101746786 -180446878 - L2 LINE L2 -208 3064 2316 2271 184 78 0 chr1 101746790 101747177 -180446487 + MER47B DNA MER2_type 2 418 0 291 347 11 11 chr1 101747843 101747938 -180445726 + MER5B DNA MER1_type 84 178 0 757 141 0 101 chr1 101749330 101749479 -180444185 + AluJo SINE Alu 2 135 -177 24 77 0 0 chr1 101750337 101750389 -180443275 + GC_rich Low_complexity Low_complexity 1 52 0 1125 139 0 0 chr1 101751554 101751720 -180441944 + AluSp SINE Alu 137 302 -11 611 197 53 40 chr1 101751860 101752012 -180441652 + MER97a DNA MER1_type? 16 169 -725 2174 107 3 0 chr1 101752342 101752632 -180441032 - AluSg SINE Alu -19 291 1 258 105 0 0 chr1 101754294 101754332 -180439332 + (AGGGGG)n Simple_repeat Simple_repeat 1 38 0 203 365 17 34 chr1 101754509 101754687 -180438977 + MER5B DNA MER1_type 4 178 0 731 268 16 121 chr1 101754761 101755142 -180438522 - L2 LINE L2 -5 3308 2968 1634 172 0 21 chr1 101755382 101755661 -180438003 + AluJo SINE Alu 5 277 -35 1310 274 55 29 chr1 101755803 101755964 -180437700 - L2 LINE L2 -337 2977 2822 1258 146 52 19 chr1 101755964 101756176 -180437488 - MER20 DNA MER1_type 0 219 1 1310 274 55 29 chr1 101756176 101756433 -180437231 - L2 LINE L2 -492 2822 2548 2193 113 0 13 chr1 101756489 101756791 -180436873 - AluSq SINE Alu -15 298 1 193 188 0 83 chr1 101757211 101757259 -180436405 + MIR SINE MIR 216 259 -3 738 196 31 6 chr1 101757547 101757710 -180435954 + MER33 DNA MER1_type 1 167 -157 * 1564 194 31 14 chr1 101757702 101758057 -180435607 - Charlie1 DNA MER1_type -529 2232 1872 2483 66 3 7 chr1 101758059 101758364 -180435300 - AluY SINE Alu -6 305 2 367 306 27 9 chr1 101758671 101758782 -180434882 + MIR3 SINE MIR 89 201 -7 36 53 0 0 chr1 101758834 101758891 -180434773 + AT_rich Low_complexity Low_complexity 1 57 0 1052 113 0 0 chr1 101759502 101759643 -180434021 + AluJb SINE Alu 1 141 -171 189 0 0 0 chr1 101759732 101759753 -180433911 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr1 101760692 101760718 -180432946 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr1 101764505 101764530 -180429134 + (T)n Simple_repeat Simple_repeat 1 25 0 619 249 24 30 chr1 101765214 101765383 -180428281 + MIR SINE MIR 89 256 -6 1758 184 87 16 chr1 101765783 101766153 -180427511 - MSTD LTR MaLR 0 396 1 1738 175 0 21 chr1 101766634 101766919 -180426745 + AluJb SINE Alu 1 279 -33 470 241 9 26 chr1 101767271 101767387 -180426277 + MIR SINE MIR 94 207 -55 251 247 13 52 chr1 101767759 101767836 -180425828 - L2 LINE L2 -2 3311 3238 1355 144 9 5 chr1 101767966 101768181 -180425483 + AluSg/x SINE Alu 85 300 -10 411 228 32 41 chr1 101769762 101769885 -180423779 - MIR SINE MIR -123 139 18 21 36 0 0 chr1 101770031 101770059 -180423605 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr1 101770749 101770771 -180422893 + (T)n Simple_repeat Simple_repeat 1 22 0 3278 176 42 42 chr1 101770809 101771060 -180422604 + L1MB5 LINE L1 5433 5683 -491 180 0 0 0 chr1 101771060 101771080 -180422584 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1895 142 14 0 chr1 101771083 101771364 -180422300 - AluSx SINE Alu -25 287 3 3278 176 42 42 chr1 101771364 101771842 -180421822 + L1MB5 LINE L1 5684 6166 -8 396 232 0 0 chr1 101772082 101772181 -180421483 - MER113 DNA MER1_type? -410 111 13 2264 68 10 17 chr1 101773014 101773308 -180420356 + AluY SINE Alu 1 292 -19 405 164 0 0 chr1 101773863 101773930 -180419734 + FLAM SINE Alu 64 130 -13 2057 142 0 7 chr1 101774632 101774928 -180418736 + AluJb SINE Alu 3 296 -16 640 242 147 33 chr1 101775332 101775543 -180418121 - MIR SINE MIR -13 249 15 2254 119 0 3 chr1 101775668 101775979 -180417685 + AluSx SINE Alu 3 312 0 2442 74 0 0 chr1 101777244 101777541 -180416123 + AluSg SINE Alu 1 297 -13 188 42 42 62 chr1 101778390 101778438 -180415226 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 379 355 149 40 chr1 101778555 101779534 -180414130 + L2 LINE L2 1805 2890 -424 722 250 104 17 chr1 101780297 101780537 -180413127 + MIR SINE MIR 2 262 0 277 327 47 9 chr1 101782636 101782743 -180410921 - L3b LINE CR1 -322 1261 1151 600 256 160 0 chr1 101783112 101783268 -180410396 + MER5A DNA MER1_type 9 189 0 878 199 0 7 chr1 101783861 101784012 -180409652 - FRAM SINE Alu -26 150 1 203 326 0 10 chr1 101784140 101784238 -180409426 + T-rich Low_complexity Low_complexity 4 100 0 960 113 120 0 chr1 101784543 101784685 -180408979 - AluSg/x SINE Alu -26 286 128 322 343 9 19 chr1 101784685 101784793 -180408871 - MER5A DNA MER1_type -35 154 48 183 282 26 39 chr1 101784789 101784867 -180408797 + MER5B DNA MER1_type 76 152 -26 * 205 344 47 0 chr1 101784905 101784969 -180408695 + L2 LINE L2 1863 1929 -1385 307 330 58 47 chr1 101785097 101785201 -180408463 + L2 LINE L2 1962 2063 -1251 1899 115 68 0 chr1 101785201 101785479 -180408185 - AluY SINE Alu -14 297 1 307 330 58 47 chr1 101785479 101785716 -180407948 + L2 LINE L2 2063 2307 -1007 21 0 0 0 chr1 101785728 101785749 -180407915 + AT_rich Low_complexity Low_complexity 1 21 0 192 344 76 19 chr1 101785841 101785998 -180407666 + L2 LINE L2 2599 2764 -550 240 111 0 0 chr1 101786288 101786324 -180407340 + (TG)n Simple_repeat Simple_repeat 1 36 0 380 251 0 15 chr1 101786676 101786880 -180406784 + GA-rich Low_complexity Low_complexity 1 201 0 1810 138 71 3 chr1 101788052 101788335 -180405329 - AluJb SINE Alu -9 303 2 544 323 156 0 chr1 101789311 101789574 -180404090 + L2 LINE L2 2431 2734 -580 211 311 170 7 chr1 101789665 101789800 -180403864 + L2 LINE L2 2873 3029 -243 1814 164 30 0 chr1 101789891 101790189 -180403475 - AluJo SINE Alu 0 312 6 211 297 16 16 chr1 101790203 101790267 -180403397 - MER5A DNA MER1_type -120 69 6 486 108 12 0 chr1 101790701 101790784 -180402880 - L1MB4 LINE L1 0 6180 6097 2151 127 0 10 chr1 101790791 101791091 -180402573 - AluSx SINE Alu -14 298 2 273 216 324 0 chr1 101792412 101792514 -180401150 + MER58C DNA MER1_type 80 214 -1 254 267 29 29 chr1 101792829 101792934 -180400730 + L1MCa LINE L1 1088 1192 -5234 275 299 51 17 chr1 101792998 101793115 -180400549 + L2 LINE L2 3193 3313 0 383 295 63 46 chr1 101793293 101793530 -180400134 + HAL1 LINE L1 1431 1671 -836 437 272 75 0 chr1 101794862 101795009 -180398655 - MLT1J LTR MaLR -30 481 324 2278 68 11 0 chr1 101795022 101795329 -180398335 + AluY SINE Alu 1 310 0 590 256 76 6 chr1 101795377 101795549 -180398115 - MLT1J LTR MaLR -302 209 26 2320 112 0 0 chr1 101795789 101796094 -180397570 + AluSx SINE Alu 3 307 -5 366 270 76 14 chr1 101796421 101796582 -180397082 + L1MC4a LINE L1 5471 5649 -472 349 247 0 0 chr1 101796717 101796798 -180396866 - HsTC2 DNA Tc2 -1783 115 35 448 217 87 9 chr1 101796961 101797076 -180396588 + MLT1J LTR MaLR 26 149 -362 543 237 116 47 chr1 101797097 101797329 -180396335 + L1MC4a LINE L1 5665 5912 -209 340 288 40 16 chr1 101797757 101797882 -180395782 - L2 LINE L2 -926 2388 2261 342 327 90 6 chr1 101798048 101798204 -180395460 + MIR SINE MIR 58 226 -36 207 0 0 0 chr1 101798251 101798274 -180395390 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1013 176 83 10 chr1 101799647 101799851 -180393813 - MER20 DNA MER1_type 0 219 1 329 279 48 54 chr1 101800080 101800227 -180393437 + L2 LINE L2 3127 3272 0 426 325 32 8 chr1 101800368 101800494 -180393170 - L2 LINE L2 0 3272 3144 4625 159 22 12 chr1 101800758 101801581 -180392083 + MER6 DNA MER2_type 32 862 -3 983 297 197 2 chr1 101802050 101802461 -180391203 + L2 LINE L2 2805 3295 -18 308 260 85 56 chr1 101802692 101803052 -180390612 - MLT1L LTR MaLR -11 604 127 467 194 24 65 chr1 101803312 101803436 -180390228 - MIR SINE MIR -127 135 17 2149 118 10 0 chr1 101803517 101803813 -180389851 + AluSx SINE Alu 2 300 -12 343 324 18 9 chr1 101804075 101804186 -180389478 + L2 LINE L2 3149 3260 -12 332 332 93 60 chr1 101804258 101804982 -180388682 - L2 LINE L2 -215 3057 2310 360 111 0 0 chr1 101805243 101805297 -180388367 + (TG)n Simple_repeat Simple_repeat 2 55 0 848 221 13 43 chr1 101806638 101806873 -180386791 + L2 LINE L2 3080 3307 -6 22 0 0 0 chr1 101808070 101808092 -180385572 + AT_rich Low_complexity Low_complexity 1 22 0 562 299 46 28 chr1 101808247 101808464 -180385200 - MIR SINE MIR -1 261 41 2045 125 0 10 chr1 101808522 101808818 -180384846 - AluSx SINE Alu -19 293 1 1745 150 7 7 chr1 101808871 101809145 -180384519 - AluJb SINE Alu -36 276 3 2331 87 0 10 chr1 101809156 101809466 -180384198 - AluY SINE Alu -4 307 1 858 285 27 5 chr1 101809529 101809750 -180383914 + MIR SINE MIR 3 228 -34 2927 126 49 16 chr1 101810511 101810879 -180382785 + MER75 DNA T2_type 1 390 -124 1841 133 106 6 chr1 101810879 101811218 -180382446 + THE1C LTR MaLR 3 375 0 2927 126 49 16 chr1 101811218 101811340 -180382324 + MER75 DNA T2_type 390 507 -7 695 237 35 24 chr1 101811682 101811851 -180381813 - MIR3 SINE MIR -30 178 8 734 267 76 5 chr1 101811868 101812078 -180381586 - MIR SINE MIR 0 262 38 629 329 60 30 chr1 101813136 101813434 -180380230 + L1MEd LINE L1 792 1098 -5021 290 212 12 47 chr1 101813457 101813542 -180380122 - LTR33 LTR ERVL 0 521 440 428 271 72 57 chr1 101813615 101813947 -180379717 + L1MEd LINE L1 2468 2804 -3325 479 299 72 53 chr1 101813967 101814288 -180379376 + L1MEd LINE L1 2878 3204 -2925 588 161 30 107 chr1 101814295 101814463 -180379201 - MIR SINE MIR 0 262 108 243 317 54 21 chr1 101814535 101814775 -180378889 + L1MEd LINE L1 3328 3575 -2554 290 145 0 0 chr1 101814821 101814883 -180378781 - L1MB5 LINE L1 0 6174 6113 * 744 311 71 37 chr1 101814874 101815874 -180377790 + L1MEd LINE L1 3608 4641 -1488 824 209 118 4 chr1 101816205 101816459 -180377205 + Charlie4a DNA MER1_type 119 401 -107 185 0 40 0 chr1 101816463 101816488 -180377176 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 40782 34 21 2 chr1 101816512 101822544 -180371120 - L1PA3 LINE L1 0 6155 3 384 208 40 20 chr1 101822551 101822652 -180371012 + Charlie4a DNA MER1_type 406 508 0 358 296 153 45 chr1 101822652 101823071 -180370593 - L2 LINE L2 -1318 1996 1533 231 36 0 0 chr1 101823444 101823472 -180370192 + (TG)n Simple_repeat Simple_repeat 2 29 0 2912 57 3 3 chr1 101823507 101823878 -180369786 + L1PA7 LINE L1 5784 6154 0 198 103 0 0 chr1 101824066 101824095 -180369569 + (TTC)n Simple_repeat Simple_repeat 2 30 0 647 293 64 32 chr1 101824592 101824937 -180368727 - MARNA DNA Mariner -25 561 206 224 318 56 48 chr1 101824988 101825114 -180368550 - L2 LINE L2 -469 2845 2719 242 274 151 19 chr1 101825164 101825270 -180368394 - L3 LINE CR1 -1123 454 335 381 323 24 8 chr1 101825792 101825916 -180367748 - L2 LINE L2 0 3313 3188 198 336 103 17 chr1 101825986 101826102 -180367562 + L2 LINE L2 2676 2801 -513 250 281 47 0 chr1 101826118 101826182 -180367482 + L2 LINE L2 3247 3313 0 209 311 60 93 chr1 101827106 101827257 -180366407 + MIR3 SINE MIR 2 147 -61 290 226 107 12 chr1 101827349 101827433 -180366231 - MIR SINE MIR -19 243 152 458 205 0 12 chr1 101827509 101827592 -180366072 - AluJ/FLAM SINE Alu -228 84 3 231 114 0 0 chr1 101827802 101827837 -180365827 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 233 368 48 40 chr1 101827958 101828083 -180365581 + L2 LINE L2 2917 3042 -230 691 68 10 10 chr1 101828128 101828231 -180365433 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 1061 65 24 12 chr1 101828490 101828658 -180365006 + (TTTC)n Simple_repeat Simple_repeat 1 170 0 1879 145 10 3 chr1 101828661 101828950 -180364714 - AluJb SINE Alu -21 291 1 366 297 119 35 chr1 101828967 101829277 -180364387 + MLT1I LTR MaLR 47 382 -27 290 264 0 58 chr1 101829349 101829436 -180364228 + L2 LINE L2 3186 3267 -5 308 128 51 0 chr1 101829631 101829709 -180363955 + (TA)n Simple_repeat Simple_repeat 1 82 0 688 358 107 25 chr1 101830031 101830819 -180362845 + L2 LINE L2 693 1544 -1770 554 320 73 49 chr1 101830879 101831247 -180362417 - L2 LINE L2 -1156 2158 1774 2275 108 7 3 chr1 101831247 101831553 -180362111 + AluSc SINE Alu 1 307 -2 554 320 73 49 chr1 101831553 101831675 -180361989 - L2 LINE L2 -1540 1774 1656 2428 91 0 0 chr1 101831755 101832063 -180361601 - AluY SINE Alu -3 308 1 400 371 24 21 chr1 101832065 101832399 -180361265 + L2 LINE L2 2149 2483 -831 408 237 137 29 chr1 101832516 101832655 -180361009 + L2 LINE L2 3158 3311 -2 372 294 34 20 chr1 101832696 101832842 -180360822 - MIR SINE MIR -59 203 56 189 121 0 0 chr1 101833041 101833074 -180360590 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 500 279 168 0 chr1 101833082 101833279 -180360385 + MIR SINE MIR 33 262 0 430 292 146 0 chr1 101833697 101833841 -180359823 - MIR SINE MIR -17 245 81 382 331 13 13 chr1 101834019 101834173 -180359491 - MER5A DNA MER1_type -10 179 26 775 248 36 29 chr1 101834786 101835064 -180358600 - L1MA9 LINE L1 -38 6274 5995 552 98 70 0 chr1 101835083 101835303 -180358361 + (TA)n Simple_repeat Simple_repeat 1 235 0 539 134 35 24 chr1 101835333 101835466 -180358198 - L1MB1 LINE L1 -237 5927 5793 6882 58 7 9 chr1 101835468 101836033 -180357631 + L1MB1 LINE L1 5215 5779 -375 2468 66 0 3 chr1 101836033 101836334 -180357330 + AluY SINE Alu 1 300 -11 6882 58 7 9 chr1 101836334 101836702 -180356962 + L1PA7 LINE L1 5779 6146 -8 2539 173 31 11 chr1 101837038 101837577 -180356087 - L1MB1 LINE L1 -509 5803 5254 5574 183 18 18 chr1 101837584 101838857 -180354807 - L1MB1 LINE L1 -1416 4730 3457 1759 184 0 7 chr1 101838857 101839156 -180354508 - AluJo SINE Alu -15 297 1 5574 183 18 18 chr1 101839156 101839194 -180354470 - L1MB1 LINE L1 -2689 3457 3420 6562 33 4 0 chr1 101839236 101840020 -180353644 + L1PA4 LINE L1 5367 6153 -2 378 271 53 53 chr1 101840208 101840359 -180353305 + L2 LINE L2 2573 2723 -591 302 301 0 0 chr1 101840361 101840434 -180353230 + L2 LINE L2 3237 3309 -4 634 349 38 62 chr1 101840529 101840950 -180352714 + L2 LINE L2 2844 3254 -18 529 300 74 5 chr1 101841113 101841303 -180352361 + L2 LINE L2 2551 2753 -561 181 422 12 0 chr1 101841250 101841333 -180352331 - MIR SINE MIR -80 128 45 * 314 187 0 56 chr1 101842470 101842523 -180351141 - L1MC4 LINE L1 0 8042 7996 1776 179 14 10 chr1 101842523 101842820 -180350844 - AluJb SINE Alu -14 298 1 314 187 0 56 chr1 101842820 101842873 -180350791 - L1MC4 LINE L1 -46 7996 7942 192 40 0 0 chr1 101842911 101842936 -180350728 + (TC)n Simple_repeat Simple_repeat 2 26 0 188 243 14 0 chr1 101842936 101843010 -180350654 + (TA)n Simple_repeat Simple_repeat 1 75 0 4287 205 21 74 chr1 101843018 101843191 -180350473 - L1MC4 LINE L1 -144 7898 7717 1874 150 116 0 chr1 101843191 101843552 -180350112 - MER57A LTR ERV1 0 403 1 4287 205 21 74 chr1 101843552 101844622 -180349042 - L1MC4 LINE L1 -325 7717 6721 276 247 35 0 chr1 101845190 101845275 -180348389 + MER103 DNA DNA 77 164 -2 2084 106 25 0 chr1 101845766 101846049 -180347615 - AluSg SINE Alu -20 290 1 311 345 35 0 chr1 101848432 101848548 -180345116 - L2 LINE L2 -1 3312 3193 598 250 8 0 chr1 101848557 101848681 -180344983 - MER58A DNA MER1_type 0 125 1 244 294 20 39 chr1 101848857 101848959 -180344705 - L2 LINE L2 -266 3006 2907 578 292 26 63 chr1 101848959 101849384 -180344280 + MLT1I LTR MaLR 1 409 0 196 360 0 13 chr1 101849813 101849888 -180343776 + MIR3 SINE MIR 11 84 -124 345 259 107 38 chr1 101850115 101850246 -180343418 - MIR3 SINE MIR -67 141 2 2607 139 28 12 chr1 101851186 101851611 -180342053 + Tigger2a DNA MER2_type 1 432 -2 1007 223 143 17 chr1 101852181 101852468 -180341196 - MLT2B3 LTR ERVL -227 327 5 359 276 105 19 chr1 101852562 101852772 -180340892 + LTR33A LTR ERVL 178 405 -118 2020 161 20 0 chr1 101854272 101854613 -180339051 - MER7A DNA MER2_type 0 346 1 267 275 123 0 chr1 101854730 101854868 -180338796 + L1MC4a LINE L1 3791 3945 -2201 559 324 50 62 chr1 101854999 101855259 -180338405 + L1MC4a LINE L1 4048 4303 -1843 1881 158 39 0 chr1 101855259 101855543 -180338121 - AluJb SINE Alu -17 295 1 559 324 50 62 chr1 101855543 101855702 -180337962 + L1MC4a LINE L1 4303 4462 -1684 7550 39 0 0 chr1 101855768 101857471 -180336193 + L1PA4 LINE L1 4452 6155 0 370 268 55 0 chr1 101857577 101857760 -180335904 + L1MC4a LINE L1 4467 4659 -1487 25 75 0 0 chr1 101857897 101857950 -180335714 + AT_rich Low_complexity Low_complexity 1 53 0 472 290 43 27 chr1 101858380 101858566 -180335098 + L1MC4a LINE L1 5465 5653 -468 241 114 13 76 chr1 101858583 101858662 -180335002 + (TA)n Simple_repeat Simple_repeat 2 75 0 276 300 26 48 chr1 101858709 101858831 -180334833 + L1MC4a LINE L1 5700 5816 -1992 2490 57 7 0 chr1 101858831 101859131 -180334533 + AluY SINE Alu 1 302 -9 276 300 26 48 chr1 101859131 101859238 -180334426 + L1MC4a LINE L1 5816 5924 -1884 2081 97 7 0 chr1 101859392 101859661 -180334003 + AluSq SINE Alu 35 305 -8 1204 278 73 33 chr1 101859838 101860262 -180333402 + LTR16C LTR ERVL 51 491 0 291 191 0 0 chr1 101860632 101860695 -180332969 + (TG)n Simple_repeat Simple_repeat 1 63 0 2180 105 3 7 chr1 101862468 101862764 -180330900 - AluSx SINE Alu -17 295 1 296 214 186 0 chr1 101862774 101862844 -180330820 + MIR SINE MIR 110 192 -70 435 342 89 9 chr1 101863384 101863609 -180330055 - MIR SINE MIR -11 251 9 280 256 12 35 chr1 101863744 101863830 -180329834 - L2 LINE L2 0 3272 3189 24 0 0 0 chr1 101865954 101865978 -180327686 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 101866828 101866850 -180326814 + AT_rich Low_complexity Low_complexity 1 22 0 1572 251 30 66 chr1 101869195 101869829 -180323835 - L1MC4a LINE L1 -1869 5939 5329 33 0 0 0 chr1 101870405 101870438 -180323226 + AT_rich Low_complexity Low_complexity 1 33 0 1500 172 54 21 chr1 101870440 101870719 -180322945 - AluJo SINE Alu -24 288 1 432 175 42 8 chr1 101871082 101871211 -180322453 - L1ME1 LINE L1 -328 5838 5707 200 197 0 115 chr1 101871272 101871333 -180322331 - MIR SINE MIR -126 136 83 594 358 85 22 chr1 101971666 101972032 -180221632 + MLT1K LTR MaLR 184 572 -16 788 298 29 76 chr1 101972053 101972537 -180221127 + L2 LINE L2 2517 2977 -337 228 269 0 51 chr1 101972721 101972799 -180220865 + L2 LINE L2 3184 3257 -15 442 278 15 0 chr1 101972818 101972951 -180220713 + MIR SINE MIR 55 189 -73 2555 175 11 81 chr1 101972995 101973037 -180220627 - MLT2B1 LTR ERVL 0 520 477 355 38 38 0 chr1 101973037 101973090 -180220574 + (CA)n Simple_repeat Simple_repeat 2 56 0 2555 175 11 81 chr1 101973090 101973109 -180220555 - MLT2B1 LTR ERVL -43 477 458 301 75 38 0 chr1 101973109 101973162 -180220502 + (TA)n Simple_repeat Simple_repeat 1 55 0 2555 175 11 81 chr1 101973162 101973573 -180220091 - MLT2B1 LTR ERVL -62 458 89 2305 124 33 28 chr1 101973573 101973935 -180219729 + THE1B LTR MaLR 1 364 0 2555 175 11 81 chr1 101973935 101974019 -180219645 - MLT2B1 LTR ERVL -431 89 1 1414 193 70 21 chr1 101974233 101974560 -180219104 - MER2 DNA MER2_type -1 343 1 2336 88 14 0 chr1 101975034 101975331 -180218333 + AluSq SINE Alu 1 301 -12 306 280 72 52 chr1 101975369 101975562 -180218102 + L2 LINE L2 3117 3313 0 2022 117 3 39 chr1 101977750 101978059 -180215605 + AluSx SINE Alu 13 310 -2 228 303 103 41 chr1 101978489 101978684 -180214980 - L2 LINE L2 -489 2825 2619 396 0 0 0 chr1 101979182 101979226 -180214438 + (CA)n Simple_repeat Simple_repeat 2 45 0 240 336 0 10 chr1 101979591 101979695 -180213969 + T-rich Low_complexity Low_complexity 1 103 0 206 292 34 11 chr1 101979998 101980087 -180213577 + MIR SINE MIR 63 153 -109 642 243 221 39 chr1 101980605 101981066 -180212598 - MLT1H LTR MaLR 0 549 5 354 140 0 0 chr1 101981188 101981245 -180212419 - MLT2B2 LTR ERVL 0 520 464 206 262 0 0 chr1 101981247 101981289 -180212375 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 246 238 5 0 chr1 101981290 101981367 -180212297 - L1MC4 LINE L1 -1339 6983 2006 322 250 17 17 chr1 101981377 101981497 -180212167 + (CATATA)n Simple_repeat Simple_repeat 3 122 0 1679 170 174 20 chr1 101981498 101981891 -180211773 - MLT2B2 LTR ERVL -56 440 1 214 343 14 0 chr1 101982767 101982840 -180210824 - L2 LINE L2 -635 2679 2606 322 331 44 28 chr1 101983248 101983429 -180210235 - MIR SINE MIR -59 203 20 2438 81 3 0 chr1 101993292 101993588 -180200076 + AluSq SINE Alu 1 297 -16 429 144 0 0 chr1 101993588 101993678 -180199986 + (TA)n Simple_repeat Simple_repeat 1 90 0 2031 116 10 10 chr1 101994335 101994627 -180199037 + AluSx SINE Alu 11 302 -10 212 162 27 0 chr1 101996587 101996624 -180197040 + GA-rich Low_complexity Low_complexity 2 39 0 2256 94 19 3 chr1 101999161 101999468 -180194196 - AluSp SINE Alu -1 312 1 356 223 101 40 chr1 101999638 101999786 -180193878 - MIR SINE MIR -26 236 80 472 298 53 6 chr1 102000215 102000386 -180193278 - MIR SINE MIR -83 179 1 1832 156 0 17 chr1 102001813 102002146 -180191518 + AluJb SINE Alu 1 328 0 2170 133 0 0 chr1 102002312 102002613 -180191051 - AluSx SINE Alu -10 302 2 681 267 136 36 chr1 102004033 102004363 -180189301 + MARNA DNA Mariner 178 540 -46 211 288 0 12 chr1 102006846 102006926 -180186738 + C-rich Low_complexity Low_complexity 3 81 0 2342 90 0 19 chr1 102007751 102008062 -180185602 + AluSx SINE Alu 1 305 -7 235 227 0 0 chr1 102008700 102008744 -180184920 - MIR SINE MIR -2 260 217 418 200 25 0 chr1 102008756 102008836 -180184828 - Tigger5 DNA MER2_type 0 2323 2242 * 460 207 0 0 chr1 102008826 102008908 -180184756 + Tigger5 DNA MER2_type 2242 2323 0 335 155 0 113 chr1 102008908 102008973 -180184691 - Tigger5 DNA MER2_type -2266 57 1 433 315 111 6 chr1 102008973 102009154 -180184510 - MIR SINE MIR -58 204 5 22 56 0 0 chr1 102010011 102010047 -180183617 + AT_rich Low_complexity Low_complexity 1 36 0 2161 113 0 3 chr1 102010814 102011115 -180182549 - AluSq SINE Alu -13 300 1 22 0 0 0 chr1 102012766 102012788 -180180876 + AT_rich Low_complexity Low_complexity 1 22 0 2378 97 0 0 chr1 102013677 102013976 -180179688 + AluSq SINE Alu 1 299 -14 24 32 0 0 chr1 102014014 102014045 -180179619 + AT_rich Low_complexity Low_complexity 1 31 0 34 0 0 0 chr1 102014323 102014357 -180179307 + AT_rich Low_complexity Low_complexity 1 34 0 1096 279 67 51 chr1 102014783 102015277 -180178387 - MLT1L LTR MaLR -75 540 39 634 253 140 15 chr1 102015302 102015593 -180178071 + MLT1H1 LTR MaLR 186 548 -7 2833 208 111 52 chr1 102015595 102016003 -180177661 + L1M4 LINE L1 2210 2593 -3553 2995 65 6 0 chr1 102016003 102016356 -180177308 - THE1A LTR MaLR 0 355 1 12725 87 7 1 chr1 102016356 102017927 -180175737 - THE1A-int LTR MaLR 0 1580 1 2775 103 11 0 chr1 102017927 102018278 -180175386 - THE1A LTR MaLR 0 355 1 2833 208 111 52 chr1 102018278 102018585 -180175079 + L1M4 LINE L1 2593 2881 -3265 2015 115 11 0 chr1 102018585 102018871 -180174793 - AluSq SINE Alu -24 289 1 2833 208 111 52 chr1 102018871 102018935 -180174729 + L1M4 LINE L1 2881 2940 -3206 1973 133 3 22 chr1 102018935 102019251 -180174413 + AluSx SINE Alu 3 312 0 2833 208 111 52 chr1 102019251 102019562 -180174102 + L1M4 LINE L1 2940 3368 -2778 256 185 0 46 chr1 102019618 102019683 -180173981 + CT-rich Low_complexity Low_complexity 2 63 0 450 0 0 0 chr1 102019683 102019733 -180173931 + (TTA)n Simple_repeat Simple_repeat 2 51 0 635 200 27 0 chr1 102019733 102019843 -180173821 - FLAM_C SINE Alu -21 122 10 1761 169 0 7 chr1 102019885 102020169 -180173495 + AluJo SINE Alu 5 286 -26 3293 245 104 32 chr1 102020202 102020374 -180173290 + L1M4 LINE L1 3425 3583 -2563 2082 132 3 0 chr1 102020374 102020669 -180172995 + AluSx SINE Alu 1 296 -16 3293 245 104 32 chr1 102020669 102020976 -180172688 + L1M4 LINE L1 3583 3867 -2279 2077 133 3 0 chr1 102020976 102021270 -180172394 - AluSx SINE Alu -17 295 1 3293 245 104 32 chr1 102021270 102021426 -180172238 + L1M4 LINE L1 3867 4010 -2136 2383 94 0 3 chr1 102021426 102021735 -180171929 - AluSg SINE Alu -2 308 1 3293 245 104 32 chr1 102021735 102022399 -180171265 + L1M4 LINE L1 4010 4819 -1327 237 87 0 0 chr1 102022419 102022465 -180171199 + LTR66 LTR ERVL 394 439 -171 2316 91 3 0 chr1 102022492 102022789 -180170875 - AluSq SINE Alu -14 299 2 250 204 37 0 chr1 102022857 102022911 -180170753 + L1MC4 LINE L1 6819 6874 -1168 3280 77 11 16 chr1 102023095 102023537 -180170127 + L1PA8 LINE L1 5733 6172 0 5083 142 29 36 chr1 102023648 102023668 -180169996 - L1MB3 LINE L1 0 6183 6164 746 217 0 0 chr1 102023668 102023788 -180169876 + FLAM_A SINE Alu 2 121 -12 5083 142 29 36 chr1 102023788 102024639 -180169025 - L1MB3 LINE L1 -19 6164 5317 2331 96 0 3 chr1 102024639 102024942 -180168722 - AluSx SINE Alu -10 302 1 5083 142 29 36 chr1 102024942 102025005 -180168659 - L1MB3 LINE L1 -866 5317 5255 701 241 22 45 chr1 102025154 102025378 -180168286 + MIR SINE MIR 42 260 -2 202 237 0 0 chr1 102025652 102025690 -180167974 + MIR SINE MIR 40 77 -131 640 271 12 24 chr1 102027131 102027301 -180166363 - L2 LINE L2 -225 3088 2921 892 226 51 68 chr1 102027397 102027568 -180166096 + MER93b LTR ERV1 74 246 -127 2136 133 0 0 chr1 102027568 102027862 -180165802 - AluSg SINE Alu -16 294 1 1775 155 45 0 chr1 102027862 102028152 -180165512 - AluJb SINE Alu -3 309 6 892 226 51 68 chr1 102028152 102028304 -180165360 + MER93b LTR ERV1 244 373 0 186 350 21 21 chr1 102028310 102028407 -180165257 - L2 LINE L2 -357 2915 2819 2250 111 7 0 chr1 102028494 102028792 -180164872 + AluSg SINE Alu 1 300 -10 484 213 0 0 chr1 102028794 102028888 -180164776 - L2 LINE L2 -691 2623 2530 2795 197 53 34 chr1 102028900 102029600 -180164064 - L1ME1 LINE L1 -5 6161 5449 280 237 21 52 chr1 102029618 102029715 -180163949 + MLT1G1 LTR MaLR 15 143 -406 8773 202 64 36 chr1 102029730 102029850 -180163814 - L1MB2 LINE L1 0 6669 6554 2231 100 28 0 chr1 102029850 102030141 -180163523 - AluSg SINE Alu -9 301 3 8773 202 64 36 chr1 102030141 102031091 -180162573 - L1MB2 LINE L1 -115 6554 5632 1463 47 0 0 chr1 102031091 102031263 -180162401 + AluY SINE Alu 128 299 -12 8773 202 64 36 chr1 102031263 102031791 -180161873 - L1MB2 LINE L1 -1037 5632 5120 2377 77 7 3 chr1 102031791 102032091 -180161573 - AluY SINE Alu -10 301 1 8773 202 64 36 chr1 102032091 102033406 -180160258 - L1MB2 LINE L1 -1549 5120 3675 2370 205 59 52 chr1 102033398 102033492 -180160172 - L1MB2 LINE L1 -3243 3401 3309 * 2253 111 0 9 chr1 102033492 102033808 -180159856 - AluSq SINE Alu 0 313 1 2370 205 59 52 chr1 102033808 102034420 -180159244 - L1MB2 LINE L1 -3335 3309 2690 * 7234 204 53 19 chr1 102034399 102036330 -180157334 - L1MB2 LINE L1 -4623 2023 17 1049 275 106 48 chr1 102036335 102036771 -180156893 + MLT1G1 LTR MaLR 93 593 -2 3260 62 65 7 chr1 102036788 102037205 -180156459 - MLT2A1 LTR ERVL -1 443 3 558 280 33 73 chr1 102037394 102037694 -180155970 + MLT1G1-int LTR MaLR 314 601 -770 507 235 61 23 chr1 102037958 102038090 -180155574 + MLT1G1-int LTR MaLR 746 882 -489 287 259 109 105 chr1 102038321 102038615 -180155049 + MLT1G1-int LTR MaLR 1053 1347 -24 1419 253 121 33 chr1 102038630 102039131 -180154533 + MLT1G1 LTR MaLR 1 595 0 464 156 69 24 chr1 102039136 102039385 -180154279 - L1ME1 LINE L1 -729 5435 5127 379 274 54 81 chr1 102039394 102039617 -180154047 - MIR SINE MIR -41 221 5 282 309 65 32 chr1 102039644 102039767 -180153897 + MIR SINE MIR 58 184 -78 361 128 90 64 chr1 102040723 102040801 -180152863 - MER116 DNA Mariner 0 80 1 21 0 0 0 chr1 102040920 102040941 -180152723 + AT_rich Low_complexity Low_complexity 1 21 0 2042 125 0 26 chr1 102041532 102041835 -180151829 + AluSq SINE Alu 1 295 -18 684 151 0 9 chr1 102042517 102042623 -180151041 + MSTA LTR MaLR 1 105 -321 1145 152 22 0 chr1 102042638 102042822 -180150842 + MSTA LTR MaLR 233 420 -8 236 250 210 10 chr1 102043177 102043277 -180150387 + MIR SINE MIR 86 205 -57 2091 72 4 4 chr1 102044051 102044314 -180149350 - AluSp SINE Alu -50 263 1 752 217 71 80 chr1 102044447 102044659 -180149005 - MER63A DNA MER1_type 0 210 1 2002 125 24 3 chr1 102044671 102044966 -180148698 - AluSx SINE Alu -11 301 1 525 246 177 0 chr1 102045669 102045844 -180147820 - L3b LINE CR1 -120 1463 1258 10576 47 11 30 chr1 102046364 102047733 -180145931 - SVA Other Other -17 1369 27 2707 60 11 0 chr1 102047884 102048249 -180145415 - SVA Other Other -1015 371 3 261 0 0 0 chr1 102048370 102048399 -180145265 + (ATG)n Simple_repeat Simple_repeat 2 30 0 219 303 101 20 chr1 102048520 102048619 -180145045 - L2 LINE L2 -947 2367 2261 898 119 30 8 chr1 102049726 102049860 -180143804 + AluJo SINE Alu 1 137 -175 192 77 0 0 chr1 102051475 102051501 -180142163 + (CAT)n Simple_repeat Simple_repeat 3 28 0 21 57 0 0 chr1 102052559 102052594 -180141070 + AT_rich Low_complexity Low_complexity 1 35 0 286 113 151 0 chr1 102052901 102052954 -180140710 + MLT1L LTR MaLR 147 207 -408 689 267 120 4 chr1 102053881 102054106 -180139558 + MIR SINE MIR 12 262 0 303 226 65 21 chr1 102054148 102054241 -180139423 - L2 LINE L2 -1534 1780 1684 1068 268 28 40 chr1 102054247 102054646 -180139018 - L2 LINE L2 -2172 1142 749 434 285 133 7 chr1 102054665 102054899 -180138765 + L2 LINE L2 2782 3037 -276 347 275 247 6 chr1 102054900 102055082 -180138582 - L2 LINE L2 -2617 697 472 1839 161 10 13 chr1 102055298 102055602 -180138062 + AluJo SINE Alu 1 303 -9 693 257 189 37 chr1 102057047 102057587 -180136077 + HAL1 LINE L1 1113 1734 -773 1249 206 17 0 chr1 102057661 102057894 -180135770 + L1MB5 LINE L1 5938 6174 0 857 173 95 0 chr1 102057895 102058063 -180135601 - Charlie1 DNA MER1_type -976 1785 1602 1054 92 0 14 chr1 102058882 102059024 -180134640 + FRAM SINE Alu 28 167 -9 335 320 172 9 chr1 102059064 102059383 -180134281 + HAL1 LINE L1 1128 1498 -1009 238 265 118 59 chr1 102059749 102059987 -180133677 + L1M4 LINE L1 4756 5007 -1139 2340 106 0 3 chr1 102060501 102060813 -180132851 + AluSx SINE Alu 1 311 -1 30 45 0 0 chr1 102060862 102060906 -180132758 + AT_rich Low_complexity Low_complexity 1 44 0 305 257 82 71 chr1 102060919 102061102 -180132562 + L1ME3A LINE L1 2647 2831 -3315 499 314 67 22 chr1 102061349 102061754 -180131910 + L1ME3A LINE L1 3325 3747 -2399 568 141 0 0 chr1 102061756 102061841 -180131823 - MER46B DNA MER2_type -2 234 150 1645 86 90 19 chr1 102061927 102062194 -180131470 - MER46B DNA MER2_type -75 161 1 317 311 163 41 chr1 102062225 102063005 -180130659 + L1ME3A LINE L1 3784 4658 -1488 2135 136 0 0 chr1 102063041 102063350 -180130314 + AluSx SINE Alu 1 309 -3 236 333 147 0 chr1 102063354 102063456 -180130208 - L2 LINE L2 0 3313 3197 240 327 74 38 chr1 102063815 102064209 -180129455 + L1MDa LINE L1 527 934 -5185 232 210 0 49 chr1 102064337 102064418 -180129246 + L1MDa LINE L1 1013 1089 -5042 264 240 16 4 chr1 102064576 102064680 -180128984 + L1MDa LINE L1 1451 1598 -892 1558 268 70 24 chr1 102064812 102065409 -180128255 + L1ME3A LINE L1 5177 5813 -357 2315 83 3 7 chr1 102065409 102065711 -180127953 + AluSx SINE Alu 1 301 -11 1558 268 70 24 chr1 102065711 102065835 -180127829 + L1ME3A LINE L1 5813 5930 -240 25 75 0 0 chr1 102067040 102067093 -180126571 + AT_rich Low_complexity Low_complexity 1 53 0 641 262 74 61 chr1 102067147 102067429 -180126235 + L1ME4a LINE L1 5421 5719 -402 2208 117 0 0 chr1 102067429 102067720 -180125944 - AluSx SINE Alu -21 291 1 641 262 74 61 chr1 102067720 102067890 -180125774 + L1ME4a LINE L1 5719 5885 -236 308 260 19 39 chr1 102068537 102068641 -180125023 + L1ME4a LINE L1 5977 6078 -43 1638 158 20 24 chr1 102068655 102068947 -180124717 - AluJo SINE Alu -19 293 3 2239 78 3 3 chr1 102069237 102069533 -180124131 - AluY SINE Alu -15 296 1 1879 179 0 3 chr1 102070071 102070373 -180123291 + AluJb SINE Alu 1 301 -11 2181 120 0 0 chr1 102073172 102073472 -180120192 - AluSx SINE Alu -12 300 1 193 261 0 0 chr1 102075406 102075452 -180118212 + L2 LINE L2 3263 3308 -5 28 48 0 0 chr1 102077163 102077205 -180116459 + AT_rich Low_complexity Low_complexity 1 42 0 1730 105 29 7 chr1 102078260 102078536 -180115128 - L1PA15 LINE L1 -4 6161 5880 614 243 111 7 chr1 102078794 102078938 -180114726 + MER45A DNA AcHobo 4 162 -16 1946 147 27 23 chr1 102080769 102081197 -180112467 + LTR23 LTR ERV1 2 463 -4 2468 218 79 44 chr1 102081525 102082205 -180111459 + MER72 LTR ERV1 1 704 -18 256 100 20 20 chr1 102083479 102083529 -180110135 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 2109 99 0 10 chr1 102083529 102083821 -180109843 - AluSx SINE Alu -23 289 1 1190 118 0 0 chr1 102083823 102083992 -180109672 - AluSg/x SINE Alu -8 304 136 2027 119 10 16 chr1 102083994 102084297 -180109367 - AluSq SINE Alu -12 301 1 2234 85 3 0 chr1 102085679 102085962 -180107702 + AluSp SINE Alu 1 284 -29 357 228 47 39 chr1 102086232 102086359 -180107305 - MER112 DNA MER1_type -1 259 132 298 221 116 0 chr1 102086699 102086785 -180106879 + MER94 DNA DNA 2 97 -37 2121 98 0 7 chr1 102089054 102089366 -180104298 + AluSx SINE Alu 1 310 0 851 275 62 17 chr1 102089458 102089698 -180103966 + MIR SINE MIR 4 254 -8 924 155 14 0 chr1 102090597 102090739 -180102925 - FAM SINE Alu -41 144 1 408 298 83 0 chr1 102098115 102098236 -180095428 + L2 LINE L2 3137 3267 -5 330 337 20 0 chr1 102098521 102098622 -180095042 - L2 LINE L2 -3 3310 3208 2365 93 0 0 chr1 102098834 102099144 -180094520 + AluY SINE Alu 1 310 -1 22 0 0 0 chr1 102101809 102101831 -180091833 + AT_rich Low_complexity Low_complexity 1 22 0 299 275 66 33 chr1 102102046 102102137 -180091527 + L3 LINE CR1 1461 1554 -23 947 189 280 0 chr1 102103379 102103665 -180089999 - MER47A DNA MER2_type 0 366 1 687 276 29 6 chr1 102104142 102104312 -180089352 + MER8 DNA MER2_type 3 176 -63 286 226 32 16 chr1 102104290 102104352 -180089312 + MER2 DNA MER2_type 282 344 -1 * 529 123 0 0 chr1 102104352 102104424 -180089240 - Tigger2 DNA MER2_type -2646 72 1 30 45 0 0 chr1 102104863 102104907 -180088757 + AT_rich Low_complexity Low_complexity 1 44 0 266 222 74 0 chr1 102105214 102105268 -180088396 - MER2 DNA MER2_type -3 342 285 984 214 19 0 chr1 102105311 102105517 -180088147 - MER2 DNA MER2_type -135 210 1 1953 106 7 3 chr1 102105670 102105953 -180087711 + AluSx SINE Alu 1 284 -28 210 71 0 0 chr1 102105953 102105981 -180087683 + (GGGAA)n Simple_repeat Simple_repeat 1 28 0 399 21 0 0 chr1 102105984 102106032 -180087632 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 369 335 16 22 chr1 102106218 102106403 -180087261 + L1MB5 LINE L1 2420 2603 -3526 767 233 86 24 chr1 102106425 102106635 -180087029 + Charlie2a DNA MER1_type 1 223 -2639 1439 252 78 78 chr1 102106673 102107516 -180086148 + L2 LINE L2 2431 3267 -46 266 250 0 16 chr1 102107519 102107583 -180086081 + Charlie2a DNA MER1_type 240 302 -2560 217 174 0 22 chr1 102107704 102107750 -180085914 + CT-rich Low_complexity Low_complexity 2 46 0 519 240 110 7 chr1 102107806 102107960 -180085704 + Charlie2a DNA MER1_type 1476 1645 -1217 399 229 110 0 chr1 102107998 102108107 -180085557 + Charlie2a DNA MER1_type 2742 2862 0 419 266 38 62 chr1 102108254 102108678 -180084986 + L1MEd LINE L1 961 1416 -4882 267 193 114 23 chr1 102108809 102108894 -180084770 + MER90 LTR ERV1 220 312 -302 12784 129 37 33 chr1 102108894 102109023 -180084641 - Tigger1 DNA MER2_type 0 2418 2291 1313 88 57 0 chr1 102109023 102109217 -180084447 + L1PA10 LINE L1 5954 6158 -10 12784 129 37 33 chr1 102109217 102109308 -180084356 - Tigger1 DNA MER2_type -127 2291 2202 2159 101 13 3 chr1 102109308 102109616 -180084048 + AluSx SINE Alu 1 311 -1 12784 129 37 33 chr1 102109616 102110086 -180083578 - Tigger1 DNA MER2_type -216 2202 1735 2214 109 0 0 chr1 102110086 102110379 -180083285 - AluSx SINE Alu -17 295 3 12784 129 37 33 chr1 102110379 102112094 -180081570 - Tigger1 DNA MER2_type -683 1735 3 808 206 19 43 chr1 102112156 102112397 -180081267 + L1MEd LINE L1 2910 3143 -2986 520 175 58 0 chr1 102112404 102112507 -180081157 + FLAM_A SINE Alu 25 133 -9 5241 213 69 79 chr1 102112542 102113744 -180079920 + L1MB5 LINE L1 3182 4394 -1763 459 109 27 2 chr1 102113744 102113928 -180079736 + AluSq SINE Alu 83 303 0 5241 213 69 79 chr1 102113928 102115491 -180078173 + L1MB5 LINE L1 4394 6082 -75 3738 186 55 0 chr1 102115491 102116186 -180077478 + MER44D DNA MER2_type 1 605 0 5241 213 69 79 chr1 102116186 102116251 -180077413 + L1MB5 LINE L1 6082 6146 -11 1030 240 41 8 chr1 102116257 102116503 -180077161 + MER90 LTR ERV1 361 614 0 361 239 104 39 chr1 102116512 102116792 -180076872 + L1ME3A LINE L1 1799 2096 -4444 1811 155 71 13 chr1 102117064 102117457 -180076207 + Charlie1b DNA MER1_type 12 427 -96 730 151 167 73 chr1 102117456 102117648 -180076016 + MER20 DNA MER1_type 6 215 -4 * 225 236 90 11 chr1 102117749 102117838 -180075826 + L1ME3A LINE L1 4886 4981 -1559 180 0 0 0 chr1 102117916 102117936 -180075728 + (TTA)n Simple_repeat Simple_repeat 3 22 0 526 306 35 24 chr1 102117941 102118196 -180075468 + L1ME3A LINE L1 5150 5407 -1133 630 211 27 60 chr1 102118278 102118463 -180075201 - MER20 DNA MER1_type -4 215 37 601 288 26 7 chr1 102118535 102118806 -180074858 + L1ME3A LINE L1 5445 5720 -820 1584 226 150 41 chr1 102118980 102119614 -180074050 + L1ME3A LINE L1 5855 6557 -7 1435 207 15 81 chr1 102120818 102121224 -180072440 - MLT1B LTR MaLR -11 379 1 630 288 164 39 chr1 102121408 102121433 -180072231 + L2 LINE L2 2834 2854 -459 2250 92 0 3 chr1 102121433 102121725 -180071939 - AluSq SINE Alu -22 291 1 630 288 164 39 chr1 102121725 102122088 -180071576 + L2 LINE L2 2854 3271 -42 2242 115 7 3 chr1 102122141 102122445 -180071219 + AluSx SINE Alu 1 305 -7 271 311 165 47 chr1 102122645 102123038 -180070626 + L2 LINE L2 2646 3078 -194 2282 82 0 47 chr1 102123440 102123758 -180069906 + AluSg SINE Alu 1 303 -7 1517 148 19 51 chr1 102124760 102125080 -180068584 + MLT1B LTR MaLR 1 358 -32 1623 185 45 13 chr1 102125080 102125388 -180068276 + Tigger7 DNA MER2_type 1 318 -2169 856 161 92 0 chr1 102125384 102125558 -180068106 + Tigger7 DNA MER2_type 2302 2491 0 * 203 316 115 22 chr1 102126030 102126169 -180067495 + MER5B DNA MER1_type 12 163 -15 230 333 101 23 chr1 102126200 102126329 -180067335 - MER5B DNA MER1_type -34 144 6 2022 94 0 0 chr1 102126438 102126693 -180066971 + AluSc SINE Alu 45 299 -10 1009 215 4 18 chr1 102126800 102127079 -180066585 + L1MB3 LINE L1 3735 4009 -2137 2039 132 7 20 chr1 102127086 102127389 -180066275 - AluSg SINE Alu -9 301 3 296 203 0 0 chr1 102127400 102127459 -180066205 + L1MB3 LINE L1 4102 4160 -1986 782 176 7 14 chr1 102127665 102127813 -180065851 + AluSg/x SINE Alu 154 300 -12 4628 154 65 8 chr1 102127817 102128809 -180064855 + L1MB3 LINE L1 5138 6183 0 23 33 0 0 chr1 102129008 102129038 -180064626 + AT_rich Low_complexity Low_complexity 1 30 0 396 220 424 6 chr1 102129053 102129230 -180064434 + MIR SINE MIR 2 252 -10 252 143 533 19 chr1 102129552 102129657 -180064007 + MER34 LTR ERV1 23 122 -420 248 242 0 32 chr1 102129628 102129690 -180063974 + MER39 LTR ERV1 223 282 -425 * 618 157 35 26 chr1 102129726 102129841 -180063823 + MER39 LTR ERV1 389 504 -203 1101 136 62 6 chr1 102129841 102130017 -180063647 + AluSg/x SINE Alu 110 295 -17 476 307 127 38 chr1 102130078 102130787 -180062877 + L2 LINE L2 2283 3058 -214 266 360 26 44 chr1 102130787 102130901 -180062763 - L2 LINE L2 0 3272 3161 2331 91 0 19 chr1 102131111 102131418 -180062246 - AluSx SINE Alu -11 301 1 277 347 58 25 chr1 102131446 102131567 -180062097 + MIR SINE MIR 21 145 -63 341 308 170 45 chr1 102131854 102132101 -180061563 + L2 LINE L2 2988 3265 -7 181 327 19 0 chr1 102132100 102132152 -180061512 + L3 LINE CR1 628 680 -897 * 601 157 10 20 chr1 102132440 102132542 -180061122 + MER2 DNA MER2_type 1 101 -244 391 296 134 19 chr1 102133225 102133539 -180060125 + L1ME3 LINE L1 5437 5786 -335 22 0 0 0 chr1 102133707 102133729 -180059935 + AT_rich Low_complexity Low_complexity 1 22 0 2159 124 0 0 chr1 102133744 102134043 -180059621 + AluSq SINE Alu 1 299 -14 190 133 0 0 chr1 102134199 102134229 -180059435 - MIR SINE MIR -131 131 102 2110 126 3 7 chr1 102134864 102135166 -180058498 + AluSq SINE Alu 1 301 -12 284 336 164 8 chr1 102135779 102135901 -180057763 - L2 LINE L2 -9 3263 3123 1391 210 50 52 chr1 102136249 102136653 -180057011 + L1ME3 LINE L1 5759 6161 -1 23 68 0 0 chr1 102138295 102138339 -180055325 + AT_rich Low_complexity Low_complexity 1 44 0 1746 200 36 72 chr1 102139077 102139319 -180054345 + MLT1D LTR MaLR 1 250 -255 2199 112 3 7 chr1 102139319 102139624 -180054040 + AluSx SINE Alu 1 304 -8 1746 200 36 72 chr1 102139624 102139905 -180053759 + MLT1D LTR MaLR 250 505 0 420 136 45 0 chr1 102139969 102140035 -180053629 - MLT1B LTR MaLR 0 390 322 976 201 94 47 chr1 102140036 102140131 -180053533 + MLT1B LTR MaLR 79 168 -222 1692 114 0 21 chr1 102140131 102140367 -180053297 - AluSx SINE Alu -81 231 1 976 201 94 47 chr1 102140367 102140569 -180053095 + MLT1B LTR MaLR 168 390 0 478 94 115 21 chr1 102140587 102140683 -180052981 + L1MB3 LINE L1 6077 6181 -2 29 0 0 25 chr1 102140831 102140849 -180052815 + AT_rich Low_complexity Low_complexity 1 18 -21 4770 121 28 19 chr1 102140849 102141662 -180052002 - L1MA7 LINE L1 -4 6287 5467 29 0 0 25 chr1 102141662 102141683 -180051981 + AT_rich Low_complexity Low_complexity 18 39 0 829 174 71 75 chr1 102141875 102142128 -180051536 + L1MC3 LINE L1 7343 7594 -191 877 167 29 15 chr1 102142128 102142332 -180051332 + L1MC2 LINE L1 6137 6343 -1 3530 214 38 35 chr1 102142450 102143553 -180050111 + L1MB2 LINE L1 2732 3837 -2309 5561 193 47 23 chr1 102143557 102144941 -180048723 + L1MB2 LINE L1 3961 5412 -759 1749 176 25 3 chr1 102144941 102145225 -180048439 + AluJb SINE Alu 1 290 -22 5561 193 47 23 chr1 102145225 102146000 -180047664 + L1MB2 LINE L1 5412 6167 -4 778 267 94 21 chr1 102146033 102146556 -180047108 + L1MEc LINE L1 50 650 -5746 550 243 60 6 chr1 102146582 102146754 -180046910 + L1MA10 LINE L1 5988 6327 -5 2389 224 96 38 chr1 102146763 102147146 -180046518 + L1ME1 LINE L1 5288 5647 -519 2110 145 117 8 chr1 102147146 102147532 -180046132 - MSTA LTR MaLR 0 428 1 2389 224 96 38 chr1 102147532 102147974 -180045690 + L1ME1 LINE L1 5647 6161 -5 1272 246 60 111 chr1 102148352 102148440 -180045224 + MLT1H LTR MaLR 11 102 -447 1933 156 10 7 chr1 102148440 102148742 -180044922 + AluJo SINE Alu 2 304 -8 1272 246 60 111 chr1 102148742 102149219 -180044445 + MLT1H LTR MaLR 102 547 -2 443 330 72 52 chr1 102149644 102149990 -180043674 + MLT1K LTR MaLR 123 475 -113 303 301 9 0 chr1 102150114 102150227 -180043437 + L1ME LINE L1 332 445 -5625 * 1201 263 135 41 chr1 102150219 102151482 -180042182 + L1ME LINE L1 99 1406 -4676 745 178 44 0 chr1 102151556 102151691 -180041973 + MLT1A1 LTR MaLR 225 365 0 315 225 7 94 chr1 102151711 102151849 -180041815 + L1ME LINE L1 5343 5468 -696 261 218 23 11 chr1 102151836 102151923 -180041741 + L1 LINE L1 5206 5293 -853 * 4057 206 99 32 chr1 102151928 102152177 -180041487 + L1M4 LINE L1 5 236 -6306 1457 205 20 14 chr1 102152177 102152474 -180041190 + AluJo SINE Alu 1 299 -3 4057 206 99 32 chr1 102152474 102153240 -180040424 + L1M4 LINE L1 236 1088 -5454 41580 56 6 2 chr1 102153245 102159371 -180034293 + L1PA5 LINE L1 1 6154 0 3817 231 157 14 chr1 102159356 102161931 -180031733 + L1M4 LINE L1 1057 4025 -2619 * 942 139 0 27 chr1 102161931 102162098 -180031566 + FRAM SINE Alu 18 161 -15 667 210 90 5 chr1 102162099 102162299 -180031365 + L1M4 LINE L1 4015 4231 -2413 2880 259 146 32 chr1 102162307 102162900 -180030764 - HAL1 LINE L1 -590 1917 1393 2022 112 77 0 chr1 102162900 102163187 -180030477 - AluSx SINE Alu -2 310 2 2880 259 146 32 chr1 102163187 102163889 -180029775 - HAL1 LINE L1 -1114 1393 474 295 350 0 16 chr1 102163985 102164108 -180029556 - HAL1 LINE L1 -2197 310 190 767 148 41 8 chr1 102164632 102164754 -180028910 + FLAM_C SINE Alu 2 127 -16 1815 121 4 46 chr1 102165911 102166191 -180027473 - AluSx SINE Alu -9 303 36 1331 156 0 38 chr1 102167945 102168182 -180025482 + AluJb SINE Alu 85 312 0 430 206 22 81 chr1 102168184 102168320 -180025344 + L1ME3 LINE L1 5937 6064 -98 399 193 91 1 chr1 102168431 102168534 -180025130 + L1ME3 LINE L1 6058 6170 0 1993 156 0 7 chr1 102168741 102169048 -180024616 - AluSx SINE Alu -5 307 3 468 51 0 0 chr1 102169126 102169185 -180024479 + (CA)n Simple_repeat Simple_repeat 1 59 0 1318 140 103 27 chr1 102169380 102169680 -180023984 + MER33 DNA MER1_type 2 324 0 1163 152 71 0 chr1 102169729 102169953 -180023711 - L1MA8 LINE L1 -1 6290 6051 180 226 170 0 chr1 102170615 102170668 -180022996 + MIR SINE MIR 123 184 -78 2020 157 20 26 chr1 102171949 102172299 -180021365 - MER7A DNA MER2_type 0 346 1 2194 112 0 7 chr1 102172513 102172807 -180020857 - AluSx SINE Alu -20 292 1 2173 121 0 0 chr1 102173355 102173661 -180020003 + AluSx SINE Alu 2 307 -5 2223 98 14 0 chr1 102175244 102175539 -180018125 - AluSc SINE Alu -10 299 1 224 290 65 11 chr1 102175733 102175826 -180017838 + MIR3 SINE MIR 103 200 -8 329 321 148 68 chr1 102177057 102177633 -180016031 + L1M2 LINE L1 778 1399 -5450 24 0 0 0 chr1 102178652 102178676 -180014988 + AT_rich Low_complexity Low_complexity 1 24 0 309 266 78 5 chr1 102178880 102179033 -180014631 - MIR SINE MIR -2 260 36 250 274 0 0 chr1 102179379 102179441 -180014223 + (TAG)n Simple_repeat Simple_repeat 3 64 0 4858 123 7 1 chr1 102180757 102181445 -180012219 - L1PA13 LINE L1 -2 6161 5470 2429 76 0 0 chr1 102181554 102181856 -180011808 + AluY SINE Alu 1 302 -9 187 270 14 54 chr1 102182175 102182249 -180011415 + L2 LINE L2 3228 3298 -15 * 287 287 35 35 chr1 102182248 102182335 -180011329 - L2 LINE L2 -1 3271 3185 431 172 178 38 chr1 102183223 102183380 -180010284 + MER104 DNA Tc2 1 179 -1 2272 101 3 0 chr1 102183627 102183925 -180009739 + AluSx SINE Alu 1 299 -13 667 311 33 0 chr1 102184305 102184456 -180009208 + MER91A DNA MER1_type 1 156 -40 341 275 12 117 chr1 102184612 102184783 -180008881 - L2 LINE L2 -88 3184 3032 326 271 24 0 chr1 102184783 102184868 -180008796 + L2 LINE L2 2946 3032 -240 408 185 29 21 chr1 102184955 102185195 -180008469 + (TA)n Simple_repeat Simple_repeat 1 242 0 2329 97 17 0 chr1 102185258 102185557 -180008107 - AluSx SINE Alu -8 304 1 318 343 80 0 chr1 102186290 102186427 -180007237 + L2 LINE L2 3161 3308 -5 1859 136 42 3 chr1 102186461 102186748 -180006916 - AluJb SINE Alu -5 307 10 240 393 40 25 chr1 102186753 102186954 -180006710 - L2 LINE L2 -252 3020 2817 2663 196 53 33 chr1 102187344 102188627 -180005037 + L1ME1 LINE L1 4753 6164 0 255 307 70 35 chr1 102189181 102189295 -180004369 - L2 LINE L2 0 3313 3196 2050 124 3 0 chr1 102189516 102189807 -180003857 - AluSg SINE Alu -18 292 1 180 0 0 0 chr1 102190156 102190176 -180003488 + (CA)n Simple_repeat Simple_repeat 2 21 0 2071 145 0 0 chr1 102190783 102191080 -180002584 - AluSx SINE Alu -15 297 1 2347 78 0 10 chr1 102191092 102191385 -180002279 - AluSc SINE Alu -19 290 1 2399 40 40 10 chr1 102191643 102191945 -180001719 + AluY SINE Alu 1 311 0 402 293 0 41 chr1 102192376 102192499 -180001165 - L2 LINE L2 -4 3309 3192 377 164 33 16 chr1 102192585 102192692 -180000972 + MLT2A2 LTR ERVL 101 209 -235 755 261 52 17 chr1 102192948 102193178 -180000486 + MIR SINE MIR 12 249 -13 224 253 0 95 chr1 102193211 102193306 -180000358 - L2 LINE L2 -9 3263 3178 1243 306 101 48 chr1 102193501 102194487 -179999177 + L2 LINE L2 1988 3089 -183 475 304 42 111 chr1 102194501 102194530 -179999134 - L2 LINE L2 -13 3259 3230 1987 156 0 0 chr1 102194530 102194831 -179998833 + AluJb SINE Alu 1 301 -11 475 304 42 111 chr1 102194831 102195120 -179998544 - L2 LINE L2 -42 3230 2976 2327 109 0 0 chr1 102195120 102195432 -179998232 - AluSx SINE Alu 0 312 1 475 304 42 111 chr1 102195432 102195546 -179998118 - L2 LINE L2 -296 2976 2856 2958 65 41 8 chr1 102195551 102195938 -179997726 + MLT2A1 LTR ERVL 1 400 -44 285 223 0 43 chr1 102195942 102196036 -179997628 - L1MC4 LINE L1 -1339 6703 6614 259 234 0 43 chr1 102195956 102196050 -179997614 + L1MC4 LINE L1 6614 6703 -1339 * 310 279 47 0 chr1 102196054 102196140 -179997524 + L1MC4 LINE L1 6614 6703 -1339 240 111 0 0 chr1 102196140 102196176 -179997488 + (TG)n Simple_repeat Simple_repeat 2 37 0 417 73 0 0 chr1 102196183 102196238 -179997426 + MLT2A2 LTR ERVL 399 453 0 8900 67 2 12 chr1 102196238 102197380 -179996284 + HERVL-A2 LTR ERVL 1 1130 -4524 1557 151 0 4 chr1 102197380 102197612 -179996052 + AluSx SINE Alu 1 231 -81 2280 97 3 3 chr1 102197645 102197943 -179995721 + AluSq SINE Alu 1 298 -15 3857 54 0 25 chr1 102197946 102198431 -179995233 + HERVL-A1 LTR ERVL 1128 1600 -4054 * 15025 69 2 13 chr1 102198427 102200317 -179993347 + HERVL-A1 LTR ERVL 2319 4187 -1467 6184 62 17 0 chr1 102200305 102201085 -179992579 + HERVL-A1 LTR ERVL 4477 5269 -385 * 2618 131 14 2 chr1 102201185 102201598 -179992066 + HERVL-A1 LTR ERVL 5237 5654 0 3335 77 42 7 chr1 102201598 102202027 -179991637 + MLT2A1 LTR ERVL 1 444 0 467 341 38 52 chr1 102202033 102202399 -179991265 - L2 LINE L2 -466 2848 2488 207 186 0 0 chr1 102202895 102202938 -179990726 + T-rich Low_complexity Low_complexity 1 43 0 513 300 142 12 chr1 102202938 102203185 -179990479 - L2 LINE L2 -923 2391 2113 191 255 101 74 chr1 102203450 102203599 -179990065 + L2 LINE L2 3130 3282 -31 2099 128 7 0 chr1 102203840 102204128 -179989536 - AluSx SINE Alu -22 290 1 701 187 14 7 chr1 102204471 102204610 -179989054 + MSTD LTR MaLR 256 395 -1 1359 221 47 64 chr1 102204610 102205041 -179988623 - L1M4 LINE L1 -962 5184 4760 2072 124 28 0 chr1 102205041 102205332 -179988332 - AluSx SINE Alu -13 299 1 1359 221 47 64 chr1 102205332 102205385 -179988279 - L1M4 LINE L1 -1386 4760 4708 511 167 115 0 chr1 102205529 102205625 -179988039 - FRAM SINE Alu -32 144 38 987 214 11 34 chr1 102205687 102205949 -179987715 - L1M4 LINE L1 -1398 4748 4493 2009 85 0 0 chr1 102206326 102206572 -179987092 + AluSx SINE Alu 1 246 -66 22 0 0 0 chr1 102206975 102206997 -179986667 + AT_rich Low_complexity Low_complexity 1 22 0 2302 85 16 3 chr1 102207128 102207435 -179986229 + AluSq SINE Alu 1 311 -2 208 89 22 44 chr1 102207758 102207803 -179985861 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 317 331 15 23 chr1 102208022 102208152 -179985512 - L2 LINE L2 -5 3308 3180 529 311 17 17 chr1 102208343 102208520 -179985144 + MIR SINE MIR 16 192 -70 195 182 355 27 chr1 102208901 102209011 -179984653 + L2 LINE L2 2367 2512 -802 1823 223 138 41 chr1 102209227 102209765 -179983899 + MLT1E2 LTR MaLR 37 626 0 221 341 23 11 chr1 102209975 102210063 -179983601 + L2 LINE L2 2981 3069 -203 710 289 107 84 chr1 102210068 102211115 -179982549 - L2 LINE L2 -1 3312 2257 3688 67 18 2 chr1 102211115 102211561 -179982103 - MLT2A2 LTR ERVL 0 453 1 9421 77 7 1 chr1 102211561 102212749 -179980915 - HERVL-A2 LTR ERVL 0 5654 4460 2274 100 3 0 chr1 102212819 102213118 -179980546 - AluSx SINE Alu -7 305 6 288 291 102 8 chr1 102213196 102213323 -179980341 + L2 LINE L2 3132 3270 -2 298 242 112 36 chr1 102213391 102213569 -179980095 + L1ME4a LINE L1 5936 6746 -38 357 158 40 26 chr1 102214046 102214122 -179979542 - MER116 DNA Mariner 0 80 4 188 214 18 0 chr1 102214995 102215051 -179978613 + GA-rich Low_complexity Low_complexity 2 58 0 237 111 0 0 chr1 102215742 102215778 -179977886 - AluJb SINE Alu -7 295 260 1231 149 0 5 chr1 102215779 102215967 -179977697 - AluJb SINE Alu -125 187 1 1669 219 68 24 chr1 102215995 102216410 -179977254 + MLT1D LTR MaLR 1 433 -72 1816 113 0 4 chr1 102216410 102216650 -179977014 + AluSx SINE Alu 43 281 -31 510 288 47 91 chr1 102216900 102217174 -179976490 - L2 LINE L2 -3 3269 3008 244 271 119 0 chr1 102217182 102217241 -179976423 - L2 LINE L2 -61 3211 3146 333 295 98 0 chr1 102218287 102218399 -179975265 - MER5A DNA MER1_type 0 189 67 948 107 0 0 chr1 102218457 102218588 -179975076 - AluSg/x SINE Alu -6 306 176 289 359 33 58 chr1 102218951 102219164 -179974500 + L1MEd LINE L1 322 524 -5595 2952 82 0 3 chr1 102219164 102219520 -179974144 + THE1A LTR MaLR 1 355 0 289 359 33 58 chr1 102219520 102219665 -179973999 + L1MEd LINE L1 524 671 -5448 272 295 155 16 chr1 102219686 102219815 -179973849 + MLT1H LTR MaLR 8 154 -395 242 302 0 35 chr1 102220134 102220220 -179973444 + MLT1H-int LTR MaLR 798 880 -491 332 265 131 92 chr1 102220354 102220681 -179972983 + MLT1H-int LTR MaLR 942 1290 -81 2289 89 10 0 chr1 102220681 102220974 -179972690 - AluSx SINE Alu -12 300 5 332 265 131 92 chr1 102220974 102221058 -179972606 + MLT1H-int LTR MaLR 1290 1369 -2 361 289 42 118 chr1 102221062 102221495 -179972169 + MLT1H LTR MaLR 3 402 -147 2149 116 3 0 chr1 102221893 102222185 -179971479 - AluSx SINE Alu -19 293 1 589 290 51 54 chr1 102222219 102222495 -179971169 + MLT1J LTR MaLR 1 275 -236 641 212 185 0 chr1 102222538 102222689 -179970975 - MER5A DNA MER1_type 0 189 11 373 293 202 5 chr1 102223494 102223692 -179969972 + MIR SINE MIR 20 256 -6 2217 104 3 0 chr1 102223738 102224025 -179969639 - AluSq SINE Alu -25 288 1 1281 315 90 37 chr1 102224212 102225047 -179968617 - L2 LINE L2 -1208 2106 1228 2023 150 61 17 chr1 102225073 102225432 -179968232 - THE1C LTR MaLR 0 375 1 1853 193 70 31 chr1 102225497 102225555 -179968109 + MER63B DNA MER1_type 5 59 -1003 1735 155 7 40 chr1 102225555 102225859 -179967805 - AluJb SINE Alu -18 294 1 1853 193 70 31 chr1 102225859 102226214 -179967450 + MER63B DNA MER1_type 59 434 -2 354 23 0 0 chr1 102227201 102227244 -179966420 + (CA)n Simple_repeat Simple_repeat 2 44 0 5130 103 4 0 chr1 102227463 102228149 -179965515 + L1PA16 LINE L1 5469 6157 -9 2140 103 0 24 chr1 102228286 102228606 -179965058 - AluSp SINE Alu 0 313 1 487 317 81 18 chr1 102228818 102229039 -179964625 + MIR SINE MIR 2 236 -26 337 345 40 34 chr1 102229440 102229588 -179964076 + MIR SINE MIR 7 155 -107 2283 114 0 3 chr1 102229602 102229910 -179963754 + AluSx SINE Alu 1 307 -5 385 255 0 38 chr1 102229982 102230088 -179963576 + MIR SINE MIR 160 261 -1 364 301 101 75 chr1 102230454 102230506 -179963158 - L2 LINE L2 -41 3231 3182 2153 117 3 3 chr1 102230506 102230804 -179962860 + AluSx SINE Alu 1 298 -14 364 301 101 75 chr1 102230804 102231064 -179962600 - L2 LINE L2 -90 3182 2905 315 85 0 0 chr1 102231064 102231111 -179962553 + (TG)n Simple_repeat Simple_repeat 1 47 0 364 301 101 75 chr1 102231111 102231182 -179962482 - L2 LINE L2 -367 2905 2837 669 280 59 113 chr1 102231829 102232131 -179961533 + L2 LINE L2 2006 2270 -1044 1274 227 42 79 chr1 102232131 102232536 -179961128 + MLT1B LTR MaLR 1 390 0 669 280 59 113 chr1 102232536 102232744 -179960920 + L2 LINE L2 2270 2488 -826 369 302 146 32 chr1 102232744 102233040 -179960624 + L2 LINE L2 2654 2994 -278 2200 122 0 0 chr1 102234195 102234490 -179959174 + AluSq SINE Alu 4 298 -15 285 247 0 43 chr1 102234490 102234583 -179959081 - L1MC4 LINE L1 -1340 6702 6614 242 271 0 62 chr1 102234599 102234695 -179958969 - L1MC4 LINE L1 -1339 6703 6614 285 238 48 0 chr1 102234730 102234814 -179958850 + L1MC4 LINE L1 6613 6700 -1342 232 143 0 0 chr1 102234856 102234898 -179958766 - LTR66 LTR ERVL -171 439 398 213 175 0 0 chr1 102234899 102234939 -179958725 + (TA)n Simple_repeat Simple_repeat 1 40 0 455 299 70 20 chr1 102235155 102235356 -179958308 - MIR SINE MIR -6 256 46 205 250 21 0 chr1 102235568 102235616 -179958048 - L2 LINE L2 -8 3305 3257 2416 84 0 0 chr1 102235747 102236055 -179957609 + AluSq SINE Alu 1 308 -5 529 117 0 0 chr1 102236133 102236210 -179957454 + AluS SINE Alu 227 303 -6 304 296 78 62 chr1 102236557 102236736 -179956928 + MLT1K LTR MaLR 189 370 -218 2197 107 10 0 chr1 102237338 102237637 -179956027 - AluSx SINE Alu -10 302 1 249 313 55 39 chr1 102237684 102237774 -179955890 + MIR SINE MIR 110 204 -58 2053 134 0 3 chr1 102237774 102238079 -179955585 + AluSx SINE Alu 1 304 -8 249 313 55 39 chr1 102238079 102238116 -179955548 + MIR SINE MIR 204 239 -23 200 204 20 20 chr1 102238127 102238176 -179955488 + (TGG)n Simple_repeat Simple_repeat 3 51 0 1517 167 27 4 chr1 102239327 102239584 -179954080 - AluJb SINE Alu -23 289 27 5799 70 12 0 chr1 102239584 102240266 -179953398 + LTR8 LTR ERV1 2 691 0 13670 71 32 4 chr1 102240271 102242040 -179951624 + HUERS-P1 LTR ERV1 19 1836 -4427 * 21728 57 11 16 chr1 102242037 102243716 -179949948 + HUERS-P1 LTR ERV1 3475 5161 -1102 2047 89 0 14 chr1 102243716 102243996 -179949668 - AluY SINE Alu -14 297 22 21728 57 11 16 chr1 102243996 102244477 -179949187 + HUERS-P1 LTR ERV1 5161 5643 -620 2165 112 7 0 chr1 102244477 102244772 -179948892 + AluSx SINE Alu 1 297 -15 21728 57 11 16 chr1 102244772 102245100 -179948564 + HUERS-P1 LTR ERV1 5643 5971 -292 2279 90 0 7 chr1 102245100 102245399 -179948265 + AluSc SINE Alu 1 297 -12 2204 111 0 3 chr1 102245399 102245695 -179947969 + AluY SINE Alu 1 296 -15 21728 57 11 16 chr1 102245695 102246006 -179947658 + HUERS-P1 LTR ERV1 5969 6263 0 5990 67 0 0 chr1 102246006 102246697 -179946967 + LTR8 LTR ERV1 1 691 0 186 103 0 0 chr1 102247119 102247148 -179946516 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 231 262 0 0 chr1 102247149 102247191 -179946473 + MER68 LTR ERV1 237 278 -284 709 189 16 0 chr1 102247193 102247315 -179946349 + FLAM_A SINE Alu 4 127 -6 21 0 0 0 chr1 102247315 102247336 -179946328 + AT_rich Low_complexity Low_complexity 1 21 0 2058 136 0 3 chr1 102247343 102247645 -179946019 + AluSx SINE Alu 1 301 -11 1088 237 48 21 chr1 102247654 102247945 -179945719 + MER77 LTR ERV1 303 601 -4 427 223 98 36 chr1 102248194 102248306 -179945358 - MIR SINE MIR -132 130 12 201 290 0 16 chr1 102248417 102248479 -179945185 + CT-rich Low_complexity Low_complexity 6 66 0 215 348 43 35 chr1 102248534 102248649 -179945015 - L2 LINE L2 -773 2541 2426 2607 226 32 29 chr1 102248765 102248834 -179944830 - L1ME2 LINE L1 -55 6109 6042 934 212 0 18 chr1 102248834 102249004 -179944660 + FAM SINE Alu 1 167 -8 333 0 0 0 chr1 102249008 102249045 -179944619 + (TG)n Simple_repeat Simple_repeat 2 38 0 2607 226 32 29 chr1 102249045 102249650 -179944014 - L1ME2 LINE L1 -124 6040 5428 1479 214 8 30 chr1 102249658 102249990 -179943674 - L1ME1 LINE L1 -5 6161 5823 2042 213 72 40 chr1 102249990 102250261 -179943403 - LTR40a LTR ERVL 0 519 258 188 0 74 0 chr1 102250261 102250288 -179943376 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1521 182 29 29 chr1 102250288 102250568 -179943096 - AluJb SINE Alu -32 280 1 2042 213 72 40 chr1 102250568 102250778 -179942886 - LTR40a LTR ERVL -261 258 18 2638 48 3 3 chr1 102250778 102251087 -179942577 - AluSp SINE Alu -4 309 1 2042 213 72 40 chr1 102251087 102251106 -179942558 - LTR40a LTR ERVL -501 18 1 1479 214 8 30 chr1 102251106 102251138 -179942526 - L1ME1 LINE L1 -343 5823 5805 624 114 43 14 chr1 102251144 102251284 -179942380 + CT-rich Low_complexity Low_complexity 2 145 0 2432 55 0 32 chr1 102251346 102251658 -179942006 + AluY SINE Alu 1 302 -9 1367 101 0 0 chr1 102251658 102251836 -179941828 + AluSg/x SINE Alu 134 311 -1 4401 209 127 32 chr1 102251840 102252262 -179941402 - L1ME1 LINE L1 -586 5592 5211 2431 80 0 10 chr1 102252262 102252573 -179941091 - AluY SINE Alu -3 308 1 2286 106 3 0 chr1 102252577 102252879 -179940785 - AluSp SINE Alu -10 303 1 4401 209 127 32 chr1 102252879 102253888 -179939776 - L1ME1 LINE L1 -969 5209 4020 248 143 18 0 chr1 102254048 102254104 -179939560 + (CAGAGA)n Simple_repeat Simple_repeat 2 58 0 311 251 140 47 chr1 102254681 102254852 -179938812 - MER5A DNA MER1_type -2 187 1 2099 82 39 0 chr1 102254852 102255131 -179938533 + AluSg SINE Alu 1 290 -20 4087 76 8 9 chr1 102255152 102255778 -179937886 - MER41A LTR ERV1 0 635 1 221 379 0 10 chr1 102256132 102256235 -179937429 + MIR SINE MIR 46 147 -61 229 312 121 25 chr1 102256269 102256457 -179937207 - MIR SINE MIR -51 211 4 225 163 47 0 chr1 102256857 102256900 -179936764 - MIR SINE MIR -93 169 125 562 174 68 63 chr1 102256994 102257168 -179936496 - LTR48 LTR ERV1 0 768 488 380 336 70 35 chr1 102257264 102257493 -179936171 - MIR SINE MIR -6 256 20 372 250 73 0 chr1 102257554 102257650 -179936014 + MER34 LTR ERV1 24 126 -416 317 156 13 78 chr1 102257632 102257709 -179935955 + LTR29 LTR ERV1 137 208 -414 * 698 204 124 40 chr1 102257687 102257780 -179935884 + LTR48B LTR ERV1 84 168 -476 3780 71 11 0 chr1 102257780 102258228 -179935436 - MLT2A2 LTR ERVL 0 453 1 698 204 124 40 chr1 102258228 102258359 -179935305 + LTR48B LTR ERV1 168 327 -317 1265 135 78 43 chr1 102258420 102258545 -179935119 + AluSx SINE Alu 60 198 -114 5393 79 31 0 chr1 102258545 102259215 -179934449 - LTR8 LTR ERV1 0 691 1 1265 135 78 43 chr1 102259215 102259319 -179934345 + AluSx SINE Alu 198 297 -15 937 186 40 35 chr1 102259321 102259547 -179934117 + LTR48B LTR ERV1 400 626 -18 201 290 21 32 chr1 102259764 102259857 -179933807 + MIR SINE MIR 6 97 -165 288 0 0 0 chr1 102260963 102260995 -179932669 + (CTTG)n Simple_repeat Simple_repeat 2 33 0 1060 157 17 0 chr1 102261029 102261201 -179932463 - AluY SINE Alu -7 304 130 476 271 77 33 chr1 102261694 102261875 -179931789 + MER5A DNA MER1_type 1 189 0 4499 151 124 18 chr1 102261935 102262280 -179931384 - MER4D LTR ERV1 -2 901 594 2138 111 7 7 chr1 102262280 102262578 -179931086 + AluSx SINE Alu 1 298 -14 4499 151 124 18 chr1 102262578 102263047 -179930617 - MER4D LTR ERV1 -309 594 1 12420 30 2 1 chr1 102263179 102265390 -179928274 - L1PA5 LINE L1 -16 6138 3925 14753 182 44 17 chr1 102265579 102268726 -179924938 + L1MA3 LINE L1 3513 6749 -816 1060 148 0 45 chr1 102268742 102268918 -179924746 + AluJb SINE Alu 5 172 -140 6650 102 7 21 chr1 102268918 102268976 -179924688 + L1MA3 LINE L1 6761 6818 -906 2081 141 3 0 chr1 102268976 102269282 -179924382 + AluSx SINE Alu 1 307 -5 6650 102 7 21 chr1 102269282 102270172 -179923492 + L1MA3 LINE L1 6818 7719 -5 1686 134 56 114 chr1 102270172 102270207 -179923457 - THE1C LTR MaLR 0 375 340 2287 90 0 7 chr1 102270207 102270506 -179923158 + AluSq SINE Alu 10 306 -7 1686 134 56 114 chr1 102270506 102270829 -179922835 - THE1C LTR MaLR -35 340 40 1860 58 78 0 chr1 102270829 102271071 -179922593 + AluY SINE Alu 39 299 -12 1686 134 56 114 chr1 102271071 102271107 -179922557 - THE1C LTR MaLR -335 40 3 6650 102 7 21 chr1 102271107 102271135 -179922529 + L1MA3 LINE L1 7719 7724 0 2249 89 0 26 chr1 102271298 102271601 -179922063 - AluSx SINE Alu -16 296 2 319 265 122 10 chr1 102271970 102272068 -179921596 - MIR SINE MIR -70 192 84 2144 106 33 13 chr1 102272119 102272300 -179921364 - AluSp SINE Alu -6 307 116 203 0 37 0 chr1 102272300 102272327 -179921337 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2144 106 33 13 chr1 102272327 102272446 -179921218 - AluSp SINE Alu -197 116 1 194 246 0 98 chr1 102272525 102272586 -179921078 - MIR SINE MIR -21 241 187 2040 173 111 38 chr1 102272588 102273187 -179920477 - MER39 LTR ERV1 -6 701 1 1436 235 59 35 chr1 102273219 102273725 -179919939 + MER39 LTR ERV1 5 595 0 637 160 46 8 chr1 102273842 102273973 -179919691 - MER33 DNA MER1_type 0 324 189 1377 149 34 112 chr1 102273975 102274296 -179919368 - AluJb SINE Alu -5 297 2 1237 70 6 58 chr1 102274334 102274505 -179919159 - AluSp SINE Alu -151 162 1 385 128 58 12 chr1 102274507 102274593 -179919071 - MER33 DNA MER1_type -134 229 140 322 306 0 31 chr1 102274560 102274658 -179919006 - MER33 DNA MER1_type -229 95 1 * 2491 69 0 0 chr1 102274691 102274994 -179918670 + AluY SINE Alu 1 303 -8 2079 69 29 25 chr1 102274994 102275270 -179918394 + AluSc SINE Alu 1 277 -32 1758 149 3 14 chr1 102275336 102275624 -179918040 + AluJo SINE Alu 3 287 -25 1849 176 3 0 chr1 102275693 102275995 -179917669 + AluJb SINE Alu 5 307 -5 261 293 187 8 chr1 102276677 102276800 -179916864 - L2 LINE L2 0 3272 3128 269 322 33 41 chr1 102277816 102277937 -179915727 - MIR3 SINE MIR -19 189 70 400 217 113 9 chr1 102278401 102278507 -179915157 + MIR SINE MIR 47 163 -99 22 70 0 0 chr1 102278673 102278716 -179914948 + AT_rich Low_complexity Low_complexity 1 43 0 290 167 0 30 chr1 102279320 102279386 -179914278 + GA-rich Low_complexity Low_complexity 4 67 0 467 266 94 73 chr1 102280277 102280335 -179913329 + L2 LINE L2 2583 2638 -676 721 268 84 5 chr1 102280335 102280525 -179913139 - MER63A DNA MER1_type -4 206 2 467 266 94 73 chr1 102280525 102280699 -179912965 + L2 LINE L2 2638 2820 -494 517 273 143 56 chr1 102280814 102281170 -179912494 + MLT1I LTR MaLR 7 393 -16 6934 148 45 85 chr1 102281170 102281688 -179911976 - Charlie1a DNA MER1_type -1306 1455 918 1804 120 50 17 chr1 102281688 102281987 -179911677 - AluSx SINE Alu -3 309 1 6934 148 45 85 chr1 102281987 102282981 -179910683 - Charlie1a DNA MER1_type -1843 918 3 423 339 98 38 chr1 102283003 102283319 -179910345 + L2 LINE L2 2935 3269 -3 408 284 9 18 chr1 102283740 102283849 -179909815 + L2 LINE L2 3198 3305 -8 423 207 271 21 chr1 102284128 102284268 -179909396 + MER5B DNA MER1_type 4 178 0 782 316 4 16 chr1 102285399 102285655 -179908009 + MIR SINE MIR 2 254 -8 751 232 18 6 chr1 102285978 102286146 -179907518 + MLT1J2 LTR MaLR 41 210 -240 315 270 4 4 chr1 102286210 102286301 -179907363 + MLT1J2 LTR MaLR 312 406 -44 767 156 25 0 chr1 102286518 102286640 -179907024 + AluJo SINE Alu 12 136 -176 12996 89 24 28 chr1 102286647 102288661 -179905003 + L1P3 LINE L1 1 2046 -4415 2474 80 6 0 chr1 102288661 102288974 -179904690 + L1PA7 LINE L1 5840 6154 0 12996 89 24 28 chr1 102288974 102288985 -179904679 + L1P3 LINE L1 2046 2056 -4405 606 269 33 6 chr1 102289197 102289379 -179904285 + MIR SINE MIR 76 262 0 251 309 118 0 chr1 102289398 102289508 -179904156 - L2 LINE L2 -1 3312 3190 243 234 62 16 chr1 102290112 102290176 -179903488 - L3 LINE CR1 -3 1574 1508 3418 120 41 0 chr1 102290530 102291023 -179902641 + MER75 DNA T2_type 1 513 -1 2409 78 7 3 chr1 102291044 102291351 -179902313 + AluSg SINE Alu 3 310 0 1991 174 92 77 chr1 102291546 102292056 -179901608 + MLT2B3 LTR ERVL 1 521 -33 263 28 28 0 chr1 102292056 102292092 -179901572 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1991 174 92 77 chr1 102292092 102292127 -179901537 + MLT2B3 LTR ERVL 521 554 0 400 285 25 15 chr1 102292157 102292294 -179901370 + MIR3 SINE MIR 34 173 -35 736 283 57 29 chr1 102292316 102292560 -179901104 + MIR SINE MIR 12 262 0 22 35 0 0 chr1 102292710 102292739 -179900925 + AT_rich Low_complexity Low_complexity 1 29 0 1724 179 7 0 chr1 102292739 102293045 -179900619 + AluJo SINE Alu 1 308 0 253 203 85 0 chr1 102293046 102293105 -179900559 - MIR SINE MIR -43 219 156 2208 98 6 16 chr1 102293598 102293913 -179899751 + AluSp SINE Alu 1 312 -1 241 217 101 0 chr1 102294509 102294578 -179899086 + MLT1K LTR MaLR 498 573 -15 1068 245 70 67 chr1 102295736 102296335 -179897329 + L1ME4a LINE L1 5520 6120 -1 201 175 0 0 chr1 102296346 102296386 -179897278 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 243 87 0 0 chr1 102296407 102296453 -179897211 + LTR66 LTR ERVL 394 439 -171 1692 108 124 12 chr1 102296460 102296718 -179896946 - AluSg SINE Alu -23 287 1 768 279 49 18 chr1 102296958 102297184 -179896480 - MIR SINE MIR -8 254 22 2102 101 11 3 chr1 102297270 102297556 -179896108 - AluSx SINE Alu -24 288 1 214 259 37 11 chr1 102297739 102297830 -179895834 - MIR3 SINE MIR -54 154 61 850 253 22 31 chr1 102297862 102298087 -179895577 - MLT1K LTR MaLR 0 588 366 239 257 162 9 chr1 102298349 102298454 -179895210 - L1M4 LINE L1 -1334 6231 6111 184 98 24 24 chr1 102298456 102298497 -179895167 + (TTC)n Simple_repeat Simple_repeat 3 43 0 3189 232 84 10 chr1 102298503 102298961 -179894703 - L1ME1 LINE L1 -5 6161 5738 2087 150 3 0 chr1 102298961 102299267 -179894397 - AluSx SINE Alu -5 307 1 3189 232 84 10 chr1 102299267 102299643 -179894021 - L1ME1 LINE L1 -428 5738 5391 9788 88 41 0 chr1 102299643 102300879 -179892785 - HSMAR1 DNA Mariner 0 1287 1 3189 232 84 10 chr1 102300879 102301005 -179892659 - L1ME1 LINE L1 -775 5391 5276 2345 101 0 0 chr1 102301005 102301311 -179892353 - AluSc SINE Alu -3 306 1 3189 232 84 10 chr1 102301311 102301401 -179892263 - L1ME1 LINE L1 -890 5276 5042 * 8536 136 45 16 chr1 102301383 102301402 -179892262 - L1M4 LINE L1 -2963 4602 4585 2217 109 3 13 chr1 102301402 102301715 -179891949 - AluSg SINE Alu 0 310 1 8536 136 45 16 chr1 102301715 102302898 -179890766 - L1M4 LINE L1 -2980 4585 3437 2123 122 37 0 chr1 102302898 102303194 -179890470 - AluSx SINE Alu -5 307 1 8536 136 45 16 chr1 102303194 102304333 -179889331 - L1M4 LINE L1 -4128 3437 2203 3706 185 18 39 chr1 102304325 102304850 -179888814 - L1M4 LINE L1 -6842 723 216 * 2203 110 0 35 chr1 102304850 102305160 -179888504 - AluSx SINE Alu -11 301 3 3706 185 18 39 chr1 102305160 102305360 -179888304 - L1M4 LINE L1 -7349 216 13 457 117 26 0 chr1 102305365 102305442 -179888222 + L1 LINE L1 4005 4083 -2063 3226 153 13 31 chr1 102305448 102306004 -179887660 - Tigger1 DNA MER2_type -1807 611 66 3142 208 69 9 chr1 102306026 102306890 -179886774 - L1 LINE L1 -2728 3418 2503 873 191 0 13 chr1 102306892 102307044 -179886620 - AluJo SINE Alu -162 150 1 295 368 21 10 chr1 102307051 102307196 -179886468 - MIR SINE MIR -64 144 36 2146 113 0 0 chr1 102307787 102308071 -179885593 + AluSx SINE Alu 21 304 -8 544 301 131 18 chr1 102308859 102309141 -179884523 - LTR16C LTR ERVL -10 481 168 618 293 38 19 chr1 102309483 102309695 -179883969 + MIR SINE MIR 47 262 0 22 0 0 0 chr1 102310804 102310826 -179882838 + AT_rich Low_complexity Low_complexity 1 22 0 283 289 13 13 chr1 102311917 102311993 -179881671 - L2 LINE L2 -7 3265 3190 186 179 214 0 chr1 102312585 102312641 -179881023 - MER5B DNA MER1_type -85 93 26 * 214 240 0 20 chr1 102312608 102312658 -179881006 - MER5A DNA MER1_type -121 68 20 240 292 91 117 chr1 102312707 102313005 -179880659 - L2 LINE L2 -474 2840 2551 2738 83 118 2 chr1 102313273 102313671 -179879993 - MLT2A1 LTR ERVL 0 444 1 1674 173 38 59 chr1 102314004 102314098 -179879566 + MLT1D LTR MaLR 1 95 -410 1761 194 128 24 chr1 102314098 102314353 -179879311 - MLT1C LTR MaLR 0 467 240 2436 62 3 0 chr1 102314353 102314643 -179879021 - AluY SINE Alu -20 291 1 1761 194 128 24 chr1 102314643 102314810 -179878854 - MLT1C LTR MaLR -227 240 1 1674 173 38 59 chr1 102314810 102314918 -179878746 + MLT1D LTR MaLR 95 204 -301 2569 4 0 0 chr1 102314918 102315189 -179878475 + AluYa5 SINE Alu 37 307 -4 1674 173 38 59 chr1 102315189 102315503 -179878161 + MLT1D LTR MaLR 204 505 0 4064 145 18 37 chr1 102315608 102315754 -179877910 - MER50 LTR ERV1 -23 711 564 2015 94 7 24 chr1 102315754 102316061 -179877603 + AluSp SINE Alu 1 302 0 4064 145 18 37 chr1 102316061 102316638 -179877026 - MER50 LTR ERV1 -170 564 1 204 213 0 0 chr1 102317379 102317426 -179876238 + T-rich Low_complexity Low_complexity 4 50 0 1647 160 43 7 chr1 102318450 102318732 -179874932 - AluJb SINE Alu -20 292 1 195 286 0 0 chr1 102318795 102318837 -179874827 - MIR SINE MIR -55 153 112 499 255 52 86 chr1 102318941 102319231 -179874433 - Charlie8 DNA MER1_type -2137 280 1 254 184 20 0 chr1 102319245 102319294 -179874370 - L2 LINE L2 -17 3255 3206 592 160 0 9 chr1 102319431 102319537 -179874127 + L1MB3 LINE L1 6077 6181 -2 644 235 22 33 chr1 102319804 102319987 -179873677 - MIR SINE MIR -34 228 48 24 0 0 0 chr1 102321822 102321846 -179871818 + AT_rich Low_complexity Low_complexity 1 24 0 293 247 63 111 chr1 102322243 102322494 -179871170 - MLT1L LTR MaLR -52 536 321 2350 104 0 19 chr1 102322554 102322872 -179870792 - AluSx SINE Alu 0 312 1 405 0 0 0 chr1 102324168 102324213 -179869451 + (TG)n Simple_repeat Simple_repeat 2 46 0 410 309 0 0 chr1 102324213 102324524 -179869140 + (TA)n Simple_repeat Simple_repeat 1 311 0 259 273 23 0 chr1 102324525 102324613 -179869051 - L1MC4 LINE L1 -1339 6703 6614 378 171 0 0 chr1 102324615 102324685 -179868979 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 311 303 0 0 chr1 102324685 102324774 -179868890 - L1MC4 LINE L1 -1339 6703 6615 231 253 21 42 chr1 102324784 102324879 -179868785 - L1MC4 LINE L1 -1336 6706 6614 279 224 30 0 chr1 102324883 102324950 -179868714 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 234 216 68 45 chr1 102324950 102325038 -179868626 - L1MC4 LINE L1 -1336 6706 6617 211 256 0 0 chr1 102325040 102325083 -179868581 + (TA)n Simple_repeat Simple_repeat 2 44 0 301 167 71 0 chr1 102325083 102325167 -179868497 + L1MC4 LINE L1 6614 6703 -1339 326 157 0 14 chr1 102325167 102325237 -179868427 + (TA)n Simple_repeat Simple_repeat 1 69 0 770 165 24 0 chr1 102325271 102325398 -179868266 - FLAM_A SINE Alu -3 130 1 807 267 46 4 chr1 102325483 102325723 -179867941 - MIR SINE MIR -11 251 2 227 256 109 25 chr1 102325952 102326100 -179867564 - MIR SINE MIR -62 146 38 365 303 20 56 chr1 102326939 102327134 -179866530 - MIR SINE MIR -5 257 70 928 103 0 48 chr1 102328605 102328750 -179864914 + L1MC1 LINE L1 6181 6318 -15 507 233 87 24 chr1 102329297 102329634 -179864030 - MLT1J2 LTR MaLR -4 422 73 1786 174 3 7 chr1 102330148 102330453 -179863211 + AluJb SINE Alu 1 304 -8 250 263 0 0 chr1 102332631 102332688 -179860976 + L2 LINE L2 3207 3263 -9 228 111 0 0 chr1 102332781 102332817 -179860847 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 11575 41 4 6 chr1 102334815 102336187 -179857477 + HERV17 LTR ERV1 4651 6019 -2607 2384 55 3 0 chr1 102336210 102336500 -179857164 + HERV17 LTR ERV1 8336 8626 0 2860 34 0 0 chr1 102336500 102336826 -179856838 + LTR17 LTR ERV1 1 326 -454 219 69 0 0 chr1 102336826 102336855 -179856809 + (A)n Simple_repeat Simple_repeat 1 29 0 2026 113 32 3 chr1 102336867 102337151 -179856513 + AluSq SINE Alu 1 292 -21 1639 171 10 101 chr1 102337544 102337942 -179855722 - MLT1A1 LTR MaLR 0 365 4 25 51 0 0 chr1 102338257 102338296 -179855368 + AT_rich Low_complexity Low_complexity 1 39 0 31948 107 21 57 chr1 102338377 102344754 -179848910 - L1PA7 LINE L1 -4 6150 12 2086 142 129 5 chr1 102345380 102345761 -179847903 - MSTA LTR MaLR 0 428 1 1955 148 9 31 chr1 102346081 102346399 -179847265 + AluJb SINE Alu 1 311 -1 548 300 65 33 chr1 102346898 102347295 -179846369 + L2 LINE L2 24 433 -2881 221 256 110 0 chr1 102347297 102347379 -179846285 + L2 LINE L2 949 1039 -2275 1570 262 151 23 chr1 102347379 102348314 -179845350 + L2 LINE L2 2225 3294 -19 283 291 23 0 chr1 102348464 102348550 -179845114 + L2 LINE L2 3185 3272 0 1380 172 0 13 chr1 102348726 102348959 -179844705 + AluJo SINE Alu 2 231 -81 1155 147 11 31 chr1 102350015 102350206 -179843458 + MER5A DNA MER1_type 1 187 -2 355 249 64 64 chr1 102350653 102350723 -179842941 - MIR SINE MIR -87 175 106 264 30 0 0 chr1 102350723 102350756 -179842908 + (TA)n Simple_repeat Simple_repeat 2 34 0 2412 104 0 0 chr1 102350756 102351063 -179842601 - AluSx SINE Alu -5 307 1 2059 146 0 3 chr1 102351066 102351361 -179842303 - AluJo SINE Alu -16 296 3 355 249 64 64 chr1 102351361 102351458 -179842206 - MIR SINE MIR -156 106 3 487 179 154 32 chr1 102353656 102353779 -179839885 + MER69 DNA AcHobo 267 404 -2122 950 202 46 21 chr1 102353864 102354159 -179839505 + MER69 DNA AcHobo 1967 2352 -174 2134 117 0 0 chr1 102354159 102354440 -179839224 - AluSg1 SINE Alu -27 282 2 950 202 46 21 chr1 102354440 102354620 -179839044 + MER69 DNA AcHobo 2352 2526 0 894 60 0 0 chr1 102355283 102355400 -179838264 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 1494 138 15 92 chr1 102355413 102355738 -179837926 + AluJb SINE Alu 1 300 -12 196 167 56 56 chr1 102357843 102357897 -179835767 + MIR SINE MIR 89 142 -66 242 233 39 10 chr1 102357915 102358018 -179835646 + (TA)n Simple_repeat Simple_repeat 1 106 0 1014 183 0 0 chr1 102358052 102358227 -179835437 - FRAM SINE Alu -2 174 1 349 305 43 21 chr1 102358248 102358389 -179835275 - MER5B DNA MER1_type -25 164 21 436 230 121 30 chr1 102358440 102358545 -179835119 + MER5A DNA MER1_type 4 132 -57 2012 131 0 0 chr1 102358545 102358868 -179834796 - AluSx SINE Alu 0 323 1 436 230 121 30 chr1 102358868 102358926 -179834738 + MER5A DNA MER1_type 132 183 -6 287 286 45 36 chr1 102359488 102359600 -179834064 - L3 LINE CR1 -30 1547 1435 1065 199 61 71 chr1 102359624 102359702 -179833962 + LTR56 LTR ERV1 10 87 -489 2070 108 4 4 chr1 102359702 102360017 -179833647 + AluSc SINE Alu 1 315 0 1065 199 61 71 chr1 102360017 102360138 -179833526 + LTR56 LTR ERV1 87 208 -368 2446 155 36 5 chr1 102360138 102360551 -179833113 - MSTB LTR MaLR 0 426 1 1065 199 61 71 chr1 102360551 102360805 -179832859 + LTR56 LTR ERV1 208 559 -17 1905 144 3 69 chr1 102360885 102361083 -179832581 - AluJb SINE Alu 0 312 143 2217 131 0 6 chr1 102361083 102361396 -179832268 - AluSx SINE Alu -1 311 1 1905 144 3 69 chr1 102361396 102361531 -179832133 - AluJb SINE Alu -169 143 1 730 129 22 36 chr1 102361779 102361918 -179831746 + LTR49 LTR ERV1 459 595 0 348 193 53 1 chr1 102361920 102362030 -179831634 + LTR49-int LTR ERV1 1 132 -6199 1075 72 43 0 chr1 102362042 102362181 -179831483 + MER51B LTR ERV1 1 145 -232 1634 162 194 14 chr1 102362194 102362611 -179831053 - LTR10A LTR ERV1 -61 548 13 18037 94 59 67 chr1 102362662 102366462 -179827202 - Harlequin LTR ERV1 -26 7759 930 465 257 104 62 chr1 102366690 102367028 -179826636 - Harlequin LTR ERV1 -5962 687 336 288 0 0 0 chr1 102367095 102367127 -179826537 + (CA)n Simple_repeat Simple_repeat 1 32 0 486 86 37 0 chr1 102367149 102367230 -179826434 + MER51-int LTR ERV1 2588 2671 -5145 35337 36 25 3 chr1 102367234 102372302 -179821362 + L1PA4 LINE L1 675 5862 -293 3449 31 17 2 chr1 102372302 102372747 -179820917 + L1PA4 LINE L1 5718 6170 0 4395 242 56 34 chr1 102372799 102373635 -179820029 - L1MB7 LINE L1 -15 6169 5352 2178 125 0 29 chr1 102373635 102373947 -179819717 - AluSx SINE Alu -9 303 1 4395 242 56 34 chr1 102373947 102374253 -179819411 - L1MB7 LINE L1 -832 5352 5054 2226 101 0 38 chr1 102374253 102374570 -179819094 - AluSq SINE Alu -7 306 2 4395 242 56 34 chr1 102374570 102375348 -179818316 - L1MB7 LINE L1 -1130 5054 4294 1964 167 3 3 chr1 102375348 102375660 -179818004 - AluJo SINE Alu 0 312 1 4395 242 56 34 chr1 102375660 102375845 -179817819 - L1MB7 LINE L1 -1890 4294 4114 2290 107 10 0 chr1 102375845 102376154 -179817510 + AluSp SINE Alu 1 312 -1 4395 242 56 34 chr1 102376154 102376974 -179816690 - L1MB7 LINE L1 -2070 4114 3164 2007 156 3 7 chr1 102377238 102377546 -179816118 - AluJb SINE Alu -5 307 1 775 306 101 19 chr1 102377644 102378323 -179815341 - L1MEc LINE L1 -4754 1785 926 974 202 0 6 chr1 102378326 102378494 -179815170 - FAM SINE Alu -8 167 1 619 317 38 22 chr1 102379495 102379877 -179813787 + L1MC5 LINE L1 6476 6872 -936 711 216 98 30 chr1 102379928 102380225 -179813439 + L1MC5 LINE L1 7612 7928 -33 2741 75 0 8 chr1 102380341 102380699 -179812965 + THE1A LTR MaLR 1 355 0 11828 90 2 11 chr1 102380699 102381163 -179812501 + THE1A-int LTR MaLR 1 468 -1112 2109 100 0 0 chr1 102381163 102381432 -179812232 + AluSx SINE Alu 28 296 -16 11828 90 2 11 chr1 102381432 102382561 -179811103 + THE1A-int LTR MaLR 468 1580 0 2735 85 3 0 chr1 102382561 102382915 -179810749 + THE1A LTR MaLR 1 355 0 30 27 0 0 chr1 102383446 102383483 -179810181 + AT_rich Low_complexity Low_complexity 1 37 0 1682 170 3 18 chr1 102384057 102384340 -179809324 - AluJo SINE Alu -22 290 12 22 0 0 0 chr1 102384500 102384522 -179809142 + AT_rich Low_complexity Low_complexity 1 22 0 385 253 214 96 chr1 102384815 102385044 -179808620 + MIR SINE MIR 3 258 -4 33 66 0 0 chr1 102386311 102386372 -179807292 + AT_rich Low_complexity Low_complexity 1 61 0 451 307 22 63 chr1 102386712 102386926 -179806738 + L2 LINE L2 2708 2909 -363 2432 81 7 0 chr1 102386926 102387236 -179806428 + AluSp SINE Alu 1 312 -1 451 307 22 63 chr1 102387236 102387264 -179806400 + L2 LINE L2 2909 2937 -335 198 0 0 0 chr1 102389384 102389406 -179804258 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 286 266 0 0 chr1 102389619 102389683 -179803981 - L2 LINE L2 0 3313 3250 22 0 0 0 chr1 102390354 102390376 -179803288 + AT_rich Low_complexity Low_complexity 1 22 0 227 159 43 87 chr1 102390764 102390833 -179802831 - MLT1J LTR MaLR -72 439 374 2031 134 0 7 chr1 102390954 102391282 -179802382 + AluSx SINE Alu 1 312 0 21 71 0 0 chr1 102391545 102391587 -179802077 + AT_rich Low_complexity Low_complexity 1 42 0 423 287 16 8 chr1 102391762 102391891 -179801773 + MIR3 SINE MIR 74 203 -5 31 0 0 0 chr1 102392818 102392849 -179800815 + AT_rich Low_complexity Low_complexity 1 31 0 269 281 12 37 chr1 102393157 102393239 -179800425 - L2 LINE L2 0 3313 3234 211 128 26 0 chr1 102393330 102393369 -179800295 + (CTA)n Simple_repeat Simple_repeat 2 41 0 214 284 0 74 chr1 102393484 102393579 -179800085 + MIR SINE MIR 110 197 -65 364 146 42 31 chr1 102394643 102394739 -179798925 + L1M1 LINE L1 15 111 -7454 1385 173 0 19 chr1 102394790 102395056 -179798608 + L1M1 LINE L1 1105 1365 -6200 11100 112 52 8 chr1 102395078 102397027 -179796637 + L1M1 LINE L1 1486 3609 -3956 1295 199 0 9 chr1 102397028 102397259 -179796405 + AluJb SINE Alu 1 229 -83 3357 190 30 5 chr1 102397259 102398038 -179795626 + L1M1 LINE L1 3887 4684 -2881 5842 174 34 2 chr1 102400062 102401290 -179792374 + L1M1 LINE L1 4672 5939 -1626 7088 115 11 12 chr1 102401296 102401408 -179792256 + L1MA2 LINE L1 4355 4466 -1838 2275 122 0 0 chr1 102401408 102401719 -179791945 + AluSx SINE Alu 1 311 -1 7088 115 11 12 chr1 102401719 102403558 -179790106 + L1MA2 LINE L1 4466 6304 0 483 261 102 60 chr1 102403958 102404173 -179789491 + MIR SINE MIR 11 234 -28 2429 71 0 7 chr1 102404443 102404740 -179788924 + AluSg SINE Alu 1 295 -15 670 270 201 0 chr1 102405521 102405780 -179787884 + LTR16B LTR ERVL 3 313 -151 200 182 0 0 chr1 102405841 102405874 -179787790 + CT-rich Low_complexity Low_complexity 4 36 0 270 136 0 0 chr1 102406011 102406055 -179787609 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 234 229 0 31 chr1 102406092 102406254 -179787410 + CT-rich Low_complexity Low_complexity 1 156 0 4326 102 14 0 chr1 102406370 102407015 -179786649 + L1PA11 LINE L1 5487 6140 -34 304 298 46 15 chr1 102407525 102407656 -179786008 + MLT1B LTR MaLR 187 321 -69 7913 229 100 26 chr1 102407669 102409813 -179783851 + L1PA13 LINE L1 1 1983 -4814 1782 178 7 14 chr1 102409813 102410105 -179783559 - AluJb SINE Alu -22 290 1 7913 229 100 26 chr1 102410105 102412041 -179781623 + L1PA13 LINE L1 1983 4441 -2356 195 42 0 0 chr1 102412043 102412067 -179781597 + (GA)n Simple_repeat Simple_repeat 1 24 0 1047 233 76 36 chr1 102412068 102412558 -179781106 + MER39 LTR ERV1 4 565 0 2465 65 0 13 chr1 102412743 102413049 -179780615 + AluY SINE Alu 3 304 -7 23 0 0 0 chr1 102413358 102413381 -179780283 + AT_rich Low_complexity Low_complexity 1 23 0 465 252 49 0 chr1 102413567 102413690 -179779974 - MIR SINE MIR -47 215 87 388 266 35 41 chr1 102413756 102413925 -179779739 - HAL1 LINE L1 -6 2501 2334 364 295 154 0 chr1 102414287 102414443 -179779221 - L2 LINE L2 -33 3280 3101 189 107 0 0 chr1 102414496 102414524 -179779140 + (TTTCC)n Simple_repeat Simple_repeat 3 30 0 1633 183 26 29 chr1 102414532 102414843 -179778821 - AluJo SINE Alu -2 310 1 729 320 47 2 chr1 102414994 102415315 -179778349 - L2 LINE L2 -263 3050 2715 2076 163 27 69 chr1 102415455 102415933 -179777731 + MER39 LTR ERV1 250 707 0 21 0 0 0 chr1 102416471 102416492 -179777172 + AT_rich Low_complexity Low_complexity 1 21 0 504 276 0 0 chr1 102416637 102416753 -179776911 + AluJo/FLAM SINE Alu 2 117 -185 1462 185 57 14 chr1 102416640 102416921 -179776743 + AluJo SINE Alu 5 297 -15 533 243 8 15 chr1 102417584 102417728 -179775936 + L1ME3 LINE L1 5575 5714 -456 834 201 56 64 chr1 102417777 102418011 -179775653 + L1ME3 LINE L1 5931 6162 0 852 282 97 21 chr1 102418045 102418425 -179775239 + L1MC/D LINE L1 5412 5820 -1988 1520 195 14 27 chr1 102418433 102418725 -179774939 + AluJo SINE Alu 1 288 -24 1939 143 10 3 chr1 102418801 102419095 -179774569 + AluSx SINE Alu 1 296 -16 1980 243 80 12 chr1 102419095 102419264 -179774400 + MLT1F1 LTR MaLR 19 175 -392 222 105 0 0 chr1 102419264 102419302 -179774362 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 1980 243 80 12 chr1 102419302 102419646 -179774018 + MLT1F1 LTR MaLR 175 567 0 25 75 0 0 chr1 102421016 102421069 -179772595 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr1 102421165 102421186 -179772478 + AT_rich Low_complexity Low_complexity 1 21 0 279 297 116 7 chr1 102421861 102421999 -179771665 + MER20B DNA MER1_type 37 189 -594 189 0 0 0 chr1 102423448 102423469 -179770195 + (A)n Simple_repeat Simple_repeat 1 21 0 230 311 0 0 chr1 102423540 102423614 -179770050 + L1M2a LINE L1 15 88 -7080 305 241 15 113 chr1 102423656 102423859 -179769805 + L1M2a LINE L1 1932 2114 -5054 11254 104 30 27 chr1 102425639 102427356 -179766308 - L1P3 LINE L1 -4734 1727 6 2202 125 3 13 chr1 102427384 102427696 -179765968 + AluSx SINE Alu 3 311 -1 623 200 48 42 chr1 102428202 102428305 -179765359 + MER58B DNA MER1_type 176 282 -2138 1219 238 149 27 chr1 102428305 102428754 -179764910 + MLT1D LTR MaLR 1 504 -1 623 200 48 42 chr1 102428754 102428815 -179764849 + MER58B DNA MER1_type 282 341 0 1181 199 29 7 chr1 102428968 102429244 -179764420 - L1MC3 LINE L1 0 7785 7504 201 246 262 0 chr1 102429292 102429353 -179764311 - L2 LINE L2 -49 3223 3147 2214 125 0 0 chr1 102429481 102429786 -179763878 - AluSx SINE Alu -7 305 1 529 285 20 35 chr1 102429815 102430015 -179763649 - L2 LINE L2 -654 2660 2464 225 336 37 69 chr1 102430016 102430233 -179763431 + L2 LINE L2 2846 3055 -258 2327 85 10 0 chr1 102430554 102430849 -179762815 + AluSq SINE Alu 1 298 -15 710 136 0 0 chr1 102431027 102431137 -179762527 - FLAM_A SINE Alu -1 141 32 1844 118 0 8 chr1 102431137 102431392 -179762272 - AluSx SINE Alu -59 253 1 2267 88 10 0 chr1 102432282 102432577 -179761087 + AluSp SINE Alu 1 298 -15 23 0 0 0 chr1 102432805 102432828 -179760836 + AT_rich Low_complexity Low_complexity 1 23 0 2266 83 0 27 chr1 102432828 102433128 -179760536 - AluSq SINE Alu -19 294 3 59 46 0 0 chr1 102433169 102433256 -179760408 + AT_rich Low_complexity Low_complexity 1 87 0 1889 149 0 17 chr1 102433268 102433557 -179760107 - AluJo SINE Alu -28 284 1 24 0 0 0 chr1 102434317 102434341 -179759323 + AT_rich Low_complexity Low_complexity 1 24 0 508 259 99 49 chr1 102434784 102435027 -179758637 + MIR SINE MIR 8 262 0 22 56 0 0 chr1 102435199 102435235 -179758429 + AT_rich Low_complexity Low_complexity 1 36 0 1505 137 37 124 chr1 102435927 102436306 -179757358 - MER7A DNA MER2_type -1 345 2 1798 243 131 42 chr1 102436364 102438196 -179755468 - L1MEc LINE L1 -4140 2256 222 2284 106 0 0 chr1 102439904 102440205 -179753459 + AluSx SINE Alu 1 301 -11 198 0 0 0 chr1 102440244 102440266 -179753398 + (A)n Simple_repeat Simple_repeat 1 22 0 39286 74 11 14 chr1 102440285 102445724 -179747940 + L1PA6 LINE L1 11 5422 -732 2547 53 0 3 chr1 102445724 102446024 -179747640 + AluY SINE Alu 1 299 -12 39286 74 11 14 chr1 102446024 102446739 -179746925 + L1PA6 LINE L1 5422 6138 -16 3928 7 0 0 chr1 102447018 102447460 -179746204 + L1HS LINE L1 5713 6154 -1 21 0 0 0 chr1 102447791 102447812 -179745852 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 102449389 102449411 -179744253 + AT_rich Low_complexity Low_complexity 1 22 0 1099 89 101 0 chr1 102449558 102449716 -179743948 - AluSg/x SINE Alu 0 312 139 21 57 0 0 chr1 102449769 102449804 -179743860 + AT_rich Low_complexity Low_complexity 1 35 0 637 263 129 18 chr1 102450129 102450346 -179743318 - MIR SINE MIR -2 260 20 387 0 0 0 chr1 102451372 102451415 -179742249 + (CA)n Simple_repeat Simple_repeat 1 43 0 889 315 27 25 chr1 102451822 102452187 -179741477 + L2 LINE L2 1991 2356 -958 264 238 0 0 chr1 102453794 102453899 -179739765 + C-rich Low_complexity Low_complexity 1 105 0 198 0 0 0 chr1 102455281 102455303 -179738361 + (A)n Simple_repeat Simple_repeat 1 22 0 482 225 0 36 chr1 102455371 102455482 -179738182 + L1MA9 LINE L1 411 517 -7049 10599 206 28 23 chr1 102455489 102457875 -179735789 + L1MA9 LINE L1 2096 4444 -3121 1787 85 5 0 chr1 102457875 102458099 -179735565 - AluSp SINE Alu -14 299 75 10599 206 28 23 chr1 102458099 102459732 -179733932 + L1MA9 LINE L1 4444 6068 -1497 831 79 0 3 chr1 102459733 102459924 -179733740 + AluY SINE Alu 36 291 -20 1917 197 32 2 chr1 102459931 102460363 -179733301 + L1MA9 LINE L1 6059 6503 -1062 23302 157 29 19 chr1 102460365 102465834 -179727830 + L1PA11 LINE L1 1543 7610 -2 3364 190 69 63 chr1 102465825 102466218 -179727446 + L1MA9 LINE L1 6771 7160 -571 * 360 64 0 0 chr1 102466218 102466265 -179727399 + (TA)n Simple_repeat Simple_repeat 2 48 0 2380 67 0 10 chr1 102466265 102466562 -179727102 - AluY SINE Alu -15 296 3 3364 190 69 63 chr1 102466562 102466587 -179727077 + L1MA9 LINE L1 7160 7183 -548 234 91 0 0 chr1 102466587 102466620 -179727044 + (CA)n Simple_repeat Simple_repeat 2 34 0 3364 190 69 63 chr1 102466620 102467130 -179726534 + L1MA9 LINE L1 7183 7706 -25 403 322 72 43 chr1 102467382 102467590 -179726074 - MIR SINE MIR -16 246 33 235 359 0 0 chr1 102467600 102467692 -179725972 + A-rich Low_complexity Low_complexity 4 95 0 548 288 47 16 chr1 102467903 102468094 -179725570 + MARNA DNA Mariner 97 293 -293 42866 46 7 0 chr1 102468269 102474379 -179719285 + L1PA4 LINE L1 3 6155 0 1661 335 91 31 chr1 102475055 102475103 -179718561 - L2 LINE L2 -16 3297 3253 2090 179 86 8 chr1 102475103 102475500 -179718164 + MSTA LTR MaLR 1 428 0 1661 335 91 31 chr1 102475500 102476718 -179716946 - L2 LINE L2 -60 3253 1941 260 250 0 29 chr1 102476854 102476922 -179716742 - MIR SINE MIR -106 156 91 22 35 0 0 chr1 102477589 102477618 -179716046 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 102478288 102478309 -179715355 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 102478372 102478396 -179715268 + AT_rich Low_complexity Low_complexity 1 24 0 453 258 266 3 chr1 102478416 102478773 -179714891 + L1ME4a LINE L1 5483 5933 -188 295 299 186 12 chr1 102478897 102479064 -179714600 - L2 LINE L2 -1313 2001 1806 23 68 0 0 chr1 102479851 102479895 -179713769 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr1 102480247 102480287 -179713377 + AT_rich Low_complexity Low_complexity 1 40 0 331 286 7 78 chr1 102480476 102480630 -179713034 - L1M4 LINE L1 -812 5334 5192 449 265 22 74 chr1 102480951 102481000 -179712664 + HAL1 LINE L1 2289 2339 -168 1270 108 74 78 chr1 102481000 102481231 -179712433 + MER30 DNA MER1_type 1 230 0 449 265 22 74 chr1 102481231 102481411 -179712253 + HAL1 LINE L1 2339 2506 -1 1673 159 0 0 chr1 102482103 102482354 -179711310 + AluSx SINE Alu 1 251 -61 229 340 67 33 chr1 102482385 102482535 -179711129 - L2 LINE L2 0 3313 3159 971 234 89 89 chr1 102483513 102484123 -179709541 + L2 LINE L2 2690 3296 -17 794 150 0 13 chr1 102485451 102485604 -179708060 + L1MA9 LINE L1 6157 6307 -5 32 0 0 0 chr1 102485607 102485639 -179708025 + AT_rich Low_complexity Low_complexity 1 32 0 352 289 12 0 chr1 102486280 102486363 -179707301 - MER5C DNA MER1_type -239 85 2 2177 115 3 3 chr1 102486379 102486674 -179706990 - AluSg SINE Alu -15 295 1 24 32 0 0 chr1 102486884 102486915 -179706749 + AT_rich Low_complexity Low_complexity 1 31 0 1888 215 22 88 chr1 102487673 102488250 -179705414 + MLT1F LTR MaLR 1 539 -3 349 233 0 14 chr1 102488787 102488860 -179704804 + MER21B LTR ERV1 230 301 -562 2992 12 0 0 chr1 102489222 102489561 -179704103 + L1HS LINE L1 5817 6155 0 22 35 0 0 chr1 102489561 102489590 -179704074 + AT_rich Low_complexity Low_complexity 1 29 0 1627 248 57 23 chr1 102489609 102490045 -179703619 + MER21B LTR ERV1 289 739 -124 3180 156 18 47 chr1 102490081 102490684 -179702980 + L1MB7 LINE L1 4838 5393 -791 1098 217 58 69 chr1 102490684 102490764 -179702900 + MLT1A2 LTR MaLR 1 80 -294 1998 83 0 83 chr1 102490764 102491065 -179702599 - AluSg SINE Alu -8 302 27 1098 217 58 69 chr1 102491065 102491362 -179702302 + MLT1A2 LTR MaLR 80 374 0 3180 156 18 47 chr1 102491362 102491789 -179701875 + L1MB7 LINE L1 5393 5831 -353 1984 142 20 3 chr1 102491789 102492092 -179701572 + AluSc SINE Alu 1 308 -1 189 147 0 0 chr1 102492092 102492126 -179701538 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 1118 172 12 142 chr1 102492126 102492189 -179701475 + L1MB7 LINE L1 5817 5887 -297 11336 48 2 3 chr1 102492189 102494391 -179699273 + L1PA6 LINE L1 3943 6154 0 1118 172 12 142 chr1 102494391 102494665 -179698999 + L1MB7 LINE L1 5887 6110 -74 472 47 0 0 chr1 102494709 102494773 -179698891 + L1MB7 LINE L1 6114 6177 -7 688 326 124 21 chr1 102494791 102495408 -179698256 + L2 LINE L2 1233 2741 -573 353 240 0 13 chr1 102495421 102495496 -179698168 - MER5A DNA MER1_type -1 188 115 22 35 0 0 chr1 102495694 102495723 -179697941 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 102496723 102496753 -179696911 + AT_rich Low_complexity Low_complexity 1 30 0 266 259 59 0 chr1 102496780 102496865 -179696799 - L1ME2 LINE L1 -220 5944 5855 448 133 53 0 chr1 102497135 102497210 -179696454 - 7SLRNA srpRNA srpRNA -6 314 236 455 140 0 32 chr1 102497311 102497404 -179696260 - L1MA4 LINE L1 -6 6294 6205 1670 108 75 8 chr1 102497483 102497723 -179695941 - AluSg SINE Alu -15 295 40 415 161 0 32 chr1 102497770 102497863 -179695801 - L1MA4 LINE L1 -11 6292 6204 1928 137 76 13 chr1 102498458 102498773 -179694891 + MER1B DNA MER1_type 3 337 0 183 310 46 23 chr1 102499110 102499197 -179694467 + L2 LINE L2 3175 3263 -50 2090 207 18 11 chr1 102499301 102499806 -179693858 - MER68 LTR ERV1 0 562 1 2032 144 0 3 chr1 102500321 102500619 -179693045 - AluSx SINE Alu -10 302 6 330 206 63 0 chr1 102500721 102500784 -179692880 - L2 LINE L2 0 3313 3247 304 268 103 0 chr1 102501518 102501615 -179692049 - MER94 DNA DNA -21 113 7 2147 112 7 7 chr1 102502112 102502415 -179691249 - AluSx SINE Alu -9 303 1 22 56 0 0 chr1 102502763 102502799 -179690865 + AT_rich Low_complexity Low_complexity 1 36 0 339 303 14 83 chr1 102502971 102503116 -179690548 + L2 LINE L2 2955 3089 -183 382 186 200 14 chr1 102503209 102503354 -179690310 + L1MC5 LINE L1 7760 7931 -30 527 255 138 25 chr1 102504713 102504909 -179688755 + L2 LINE L2 3096 3313 0 358 330 133 6 chr1 102507196 102507369 -179686295 + MIR SINE MIR 62 256 -6 1470 216 56 6 chr1 102507617 102507936 -179685728 + MLT1A1 LTR MaLR 31 365 0 207 100 0 0 chr1 102508040 102508070 -179685594 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 976 246 112 4 chr1 102508351 102508627 -179685037 + L1M4b LINE L1 11 316 -6543 752 199 32 0 chr1 102508648 102508804 -179684860 - L1MB4 LINE L1 -2 6178 6018 1477 77 0 0 chr1 102508804 102508999 -179684665 + L1PA6 LINE L1 5958 6152 -2 2613 115 7 38 chr1 102508999 102509443 -179684221 - L1MB4 LINE L1 -146 6034 5605 1314 187 0 0 chr1 102509566 102509791 -179683873 + AluJo SINE Alu 86 310 -2 207 77 51 26 chr1 102510109 102510148 -179683516 + CT-rich Low_complexity Low_complexity 3 42 0 1304 167 13 105 chr1 102510149 102510640 -179683024 - AluJo SINE Alu 0 495 33 183 42 0 0 chr1 102511662 102511686 -179681978 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 372 93 56 0 chr1 102514280 102514334 -179679330 + U2 snRNA snRNA 1 57 -131 357 295 75 115 chr1 102514802 102515124 -179678540 + L3 LINE CR1 1055 1363 -214 2552 220 60 57 chr1 102515171 102515956 -179677708 - L1ME1 LINE L1 -5 6230 5444 1452 226 60 36 chr1 102515974 102516495 -179677169 - L1ME1 LINE L1 -836 5379 4847 1085 260 63 43 chr1 102516467 102516777 -179676887 - L1ME1 LINE L1 -3979 2417 2115 * 2069 92 64 7 chr1 102516777 102517060 -179676604 - AluSg1 SINE Alu -10 299 1 1085 260 63 43 chr1 102517060 102517383 -179676281 - L1ME1 LINE L1 -4281 2115 1771 324 277 0 34 chr1 102517402 102517521 -179676143 - L1ME1 LINE L1 -7 6157 6043 295 181 48 72 chr1 102518226 102518309 -179675355 + MLT1J2 LTR MaLR 77 157 -252 1907 149 32 35 chr1 102518506 102518882 -179674782 + THE1C LTR MaLR 1 375 0 640 251 135 33 chr1 102519939 102520308 -179673356 + MLT1J2 LTR MaLR 1 411 -39 338 201 8 75 chr1 102520618 102520752 -179672912 - L1ME3A LINE L1 -3 6159 6035 1710 221 91 20 chr1 102520764 102521201 -179672463 - L1ME3A LINE L1 -213 5957 5478 1876 129 43 0 chr1 102521201 102521479 -179672185 - AluSx SINE Alu -18 294 5 1710 221 91 20 chr1 102521479 102521548 -179672116 - L1ME3A LINE L1 -692 5478 5415 2199 102 17 3 chr1 102521556 102521851 -179671813 - AluSx SINE Alu -13 299 1 1156 246 178 4 chr1 102521964 102522520 -179671144 - L1ME3A LINE L1 -955 5191 4539 318 299 102 6 chr1 102522520 102522677 -179670987 + L2 LINE L2 3133 3304 -9 362 325 9 128 chr1 102522716 102523051 -179670613 + L2 LINE L2 2970 3264 -8 204 199 7 199 chr1 102523237 102523373 -179670291 - MER5A DNA MER1_type -68 121 12 316 206 186 29 chr1 102523722 102523824 -179669840 + MIR SINE MIR 74 191 -71 29369 102 15 25 chr1 102524001 102530526 -179663138 - L1PA8 LINE L1 -6 6481 6 2274 123 3 0 chr1 102530564 102530866 -179662798 + AluSx SINE Alu 9 311 -1 597 188 48 42 chr1 102531372 102531475 -179662189 + MER58B DNA MER1_type 176 282 -2138 1199 238 149 27 chr1 102531475 102531924 -179661740 + MLT1D LTR MaLR 1 504 -1 597 188 48 42 chr1 102531924 102531985 -179661679 + MER58B DNA MER1_type 282 341 0 1119 207 29 4 chr1 102532138 102532413 -179661251 - L1MC3 LINE L1 0 7785 7504 201 246 262 0 chr1 102532461 102532522 -179661142 - L2 LINE L2 -49 3223 3147 2277 118 0 0 chr1 102532650 102532956 -179660708 - AluSx SINE Alu -6 306 1 535 285 20 35 chr1 102532985 102533185 -179660479 - L2 LINE L2 -654 2660 2464 257 332 32 65 chr1 102533186 102533403 -179660261 + L2 LINE L2 2846 3055 -258 2324 88 10 0 chr1 102533724 102534018 -179659646 + AluSq SINE Alu 1 297 -16 710 136 0 0 chr1 102534196 102534306 -179659358 - FLAM_A SINE Alu -1 141 32 1853 118 0 8 chr1 102534306 102534561 -179659103 - AluSx SINE Alu -59 253 1 2280 88 10 0 chr1 102535451 102535746 -179657918 + AluSp SINE Alu 1 298 -15 23 0 0 0 chr1 102535974 102535997 -179657667 + AT_rich Low_complexity Low_complexity 1 23 0 2268 83 0 27 chr1 102535997 102536297 -179657367 - AluSq SINE Alu -19 294 3 59 46 0 0 chr1 102536338 102536425 -179657239 + AT_rich Low_complexity Low_complexity 1 87 0 1911 149 0 17 chr1 102536437 102536726 -179656938 - AluJo SINE Alu -28 284 1 24 0 0 0 chr1 102537486 102537510 -179656154 + AT_rich Low_complexity Low_complexity 1 24 0 518 262 94 53 chr1 102537931 102538196 -179655468 + MIR SINE MIR 2 262 0 22 56 0 0 chr1 102538368 102538404 -179655260 + AT_rich Low_complexity Low_complexity 1 36 0 1478 137 37 124 chr1 102539096 102539475 -179654189 - MER7A DNA MER2_type -1 345 2 1548 246 131 42 chr1 102539533 102541366 -179652298 - L1MEc LINE L1 -4140 2256 221 2306 106 0 0 chr1 102543073 102543374 -179650290 + AluSx SINE Alu 1 301 -11 207 0 0 0 chr1 102543413 102543436 -179650228 + (A)n Simple_repeat Simple_repeat 1 23 0 37504 74 10 13 chr1 102543455 102548890 -179644774 + L1PA6 LINE L1 11 5423 -731 2561 57 0 0 chr1 102548890 102549189 -179644475 + AluY SINE Alu 1 299 -12 37504 74 10 13 chr1 102549189 102549904 -179643760 + L1PA6 LINE L1 5423 6138 -16 3744 9 0 0 chr1 102550183 102550625 -179643039 + L1HS LINE L1 5713 6154 -1 21 0 0 0 chr1 102550956 102550977 -179642687 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 102552555 102552577 -179641087 + AT_rich Low_complexity Low_complexity 1 22 0 1106 89 101 0 chr1 102552723 102552881 -179640783 - AluSg/x SINE Alu 0 312 139 21 57 0 0 chr1 102552934 102552969 -179640695 + AT_rich Low_complexity Low_complexity 1 35 0 639 263 129 18 chr1 102553294 102553511 -179640153 - MIR SINE MIR -2 260 20 369 0 0 0 chr1 102554540 102554581 -179639083 + (CA)n Simple_repeat Simple_repeat 1 41 0 890 315 27 25 chr1 102554988 102555353 -179638311 + L2 LINE L2 1991 2356 -958 271 393 71 31 chr1 102557328 102557682 -179635982 + L2 LINE L2 2454 2821 -493 496 256 21 99 chr1 102557723 102557965 -179635699 + MER102b DNA MER1_type 103 325 -16 242 310 61 73 chr1 102557982 102558227 -179635437 + L2 LINE L2 2843 3084 -188 309 263 39 128 chr1 102558758 102558914 -179634750 + MIR SINE MIR 2 143 -119 223 154 77 19 chr1 102559415 102559467 -179634197 + MIR SINE MIR 175 229 -33 21 82 0 0 chr1 102560241 102560290 -179633374 + AT_rich Low_complexity Low_complexity 1 49 0 764 209 10 68 chr1 102560570 102560776 -179632888 + MLT1A1 LTR MaLR 1 194 -171 289 70 0 0 chr1 102560790 102560833 -179632831 - MLT2A1 LTR ERVL 0 453 411 512 45 94 18 chr1 102560872 102561100 -179632564 + (TA)n Simple_repeat Simple_repeat 1 245 0 2780 91 0 10 chr1 102561102 102561508 -179632156 - MLT2A1 LTR ERVL -40 404 3 42261 62 10 14 chr1 102561510 102565430 -179628234 - HERVL-A1 LTR ERVL 0 5654 1722 2249 119 0 3 chr1 102565430 102565733 -179627931 - AluSx SINE Alu -10 302 1 42261 62 10 14 chr1 102565733 102566863 -179626801 - HERVL-A1 LTR ERVL -3932 1722 590 7178 42 35 0 chr1 102566863 102567730 -179625934 + MER11D LTR ERVK 1 897 0 42261 62 10 14 chr1 102567730 102568180 -179625484 - HERVL-A1 LTR ERVL -5064 590 140 2129 165 55 25 chr1 102568180 102568654 -179625010 + LTR22B LTR ERVK 1 488 -4 42261 62 10 14 chr1 102568654 102568700 -179624964 - HERVL-A1 LTR ERVL -5514 140 95 1894 136 33 0 chr1 102568700 102568973 -179624691 + AluSx SINE Alu 1 304 0 199 0 0 0 chr1 102568973 102568995 -179624669 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 42261 62 10 14 chr1 102568995 102569118 -179624546 - HERVL-A1 LTR ERVL -5559 95 1 2959 94 34 16 chr1 102569118 102569159 -179624505 - MLT2A1 LTR ERVL 0 444 405 1221 105 0 0 chr1 102569159 102569370 -179624294 + (TA)n Simple_repeat Simple_repeat 1 211 0 2959 94 34 16 chr1 102569370 102569761 -179623903 - MLT2A1 LTR ERVL -39 405 1 716 163 11 103 chr1 102569810 102569994 -179623670 + MLT1A1 LTR MaLR 199 365 0 2574 209 20 11 chr1 102569994 102570159 -179623505 + MLT1A1-int LTR MaLR 1 163 -1572 2450 151 16 25 chr1 102570159 102570591 -179623073 + MSTC LTR MaLR 1 428 0 2574 209 20 11 chr1 102570591 102570965 -179622699 + MLT1A1-int LTR MaLR 163 545 -1190 4197 209 18 33 chr1 102570995 102571936 -179621728 + MLT1A1-int LTR MaLR 809 1735 0 1386 171 23 89 chr1 102571936 102572327 -179621337 + MLT1A1 LTR MaLR 1 365 0 278 281 18 26 chr1 102573053 102573167 -179620497 + MER94 DNA DNA 3 115 -19 820 263 38 42 chr1 102574763 102575025 -179618639 - MIR SINE MIR 0 262 2 383 388 77 0 chr1 102575033 102575242 -179618422 + L2 LINE L2 2621 2845 -469 252 0 0 0 chr1 102575323 102575351 -179618313 + (CA)n Simple_repeat Simple_repeat 2 29 0 243 339 92 18 chr1 102575505 102575614 -179618050 + L2 LINE L2 3136 3252 -20 2161 109 0 7 chr1 102575639 102575932 -179617732 + AluSg SINE Alu 1 291 -19 2333 105 0 0 chr1 102576024 102576319 -179617345 - AluSq SINE Alu -18 295 1 1910 136 37 10 chr1 102576319 102576614 -179617050 - AluJb SINE Alu -9 303 1 186 315 41 14 chr1 102576633 102576706 -179616958 - MIR SINE MIR -77 185 111 201 244 0 0 chr1 102577610 102577651 -179616013 - MIR3 SINE MIR -17 191 151 534 222 20 52 chr1 102577921 102577977 -179615687 - MIR SINE MIR -48 214 158 1960 172 110 62 chr1 102577977 102578449 -179615215 + MLT1D LTR MaLR 1 498 -7 1990 124 43 0 chr1 102578449 102578748 -179614916 + AluSx SINE Alu 1 312 0 534 222 20 52 chr1 102578757 102578853 -179614811 - MIR SINE MIR -104 158 67 245 333 7 54 chr1 102579623 102579770 -179613894 - MIR3 SINE MIR -48 160 21 2134 124 3 0 chr1 102579857 102580166 -179613498 + AluSx SINE Alu 1 310 0 28 29 0 0 chr1 102580428 102580463 -179613201 + AT_rich Low_complexity Low_complexity 1 35 0 1112 99 0 6 chr1 102580786 102580968 -179612696 + L1 LINE L1 4619 4799 -1347 1437 191 4 8 chr1 102580968 102581224 -179612440 - AluJb SINE Alu -53 259 5 23 33 0 0 chr1 102581364 102581394 -179612270 + AT_rich Low_complexity Low_complexity 1 30 0 234 317 16 0 chr1 102581910 102581983 -179611681 + MIR SINE MIR 53 127 -81 2113 98 0 7 chr1 102582076 102582353 -179611311 + AluSx SINE Alu 1 275 -37 266 0 0 29 chr1 102582353 102582388 -179611276 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1349 222 66 50 chr1 102582683 102583138 -179610526 + MLT1C LTR MaLR 6 467 0 343 310 208 35 chr1 102583140 102583337 -179610327 - MIR SINE MIR -6 256 26 186 222 0 79 chr1 102583315 102583378 -179610286 + L3 LINE CR1 918 975 -602 * 2237 118 0 0 chr1 102583384 102583681 -179609983 - AluSx SINE Alu -15 297 1 1635 229 59 3 chr1 102583825 102584196 -179609468 - MSTD LTR MaLR -4 392 1 7246 106 4 22 chr1 102584248 102585339 -179608325 - MER11C LTR ERVK 0 1071 1 286 242 116 42 chr1 102585426 102585521 -179608143 - L2 LINE L2 -4 3309 3208 531 248 93 0 chr1 102585982 102586111 -179607553 + LTR40a LTR ERVL 4 144 -375 264 51 0 0 chr1 102586104 102586143 -179607521 + LTR5 LTR ERVK 767 805 -164 * 1176 279 25 30 chr1 102586156 102586212 -179607452 + LTR40a LTR ERVL 120 175 -344 1329 161 90 59 chr1 102586212 102586566 -179607098 - MLT1A1 LTR MaLR 0 365 1 1176 279 25 30 chr1 102586566 102586911 -179606753 + LTR40a LTR ERVL 175 519 0 2501 135 22 0 chr1 102587591 102587999 -179605665 - MSTA LTR MaLR -11 417 1 21 0 0 0 chr1 102588561 102588582 -179605082 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr1 102588743 102588770 -179604894 + (TA)n Simple_repeat Simple_repeat 2 28 0 1743 141 90 0 chr1 102588770 102589047 -179604617 - AluSx SINE Alu -10 302 1 1678 157 26 16 chr1 102589897 102590210 -179603454 - MER58B DNA MER1_type -5 336 21 2092 124 0 0 chr1 102590337 102590643 -179603021 + AluSx SINE Alu 1 306 0 2446 161 51 43 chr1 102591883 102591923 -179601741 + L1MB3 LINE L1 4917 4955 -1228 2321 94 3 0 chr1 102591923 102592230 -179601434 + AluSq SINE Alu 1 308 -5 2446 161 51 43 chr1 102592230 102593071 -179600593 + L1MB3 LINE L1 4955 5783 -400 2076 138 9 0 chr1 102593071 102593405 -179600259 + MER2 DNA MER2_type 1 337 -8 2246 129 23 10 chr1 102593422 102593817 -179599847 + L1MB3 LINE L1 5781 6180 -3 304 281 158 37 chr1 102593873 102593934 -179599730 + MIR SINE MIR 47 99 -163 1773 163 7 14 chr1 102593934 102594229 -179599435 - AluJb SINE Alu -19 293 1 304 281 158 37 chr1 102594229 102594331 -179599333 + MIR SINE MIR 99 230 -32 186 43 0 0 chr1 102595515 102595538 -179598126 + (TC)n Simple_repeat Simple_repeat 2 24 0 1467 162 0 0 chr1 102595543 102595784 -179597880 - L1PB4 LINE L1 -6 6150 5910 302 383 115 3 chr1 102595815 102596212 -179597452 + L2 LINE L2 2634 3082 -190 282 333 10 0 chr1 102596208 102596307 -179597357 + MIR SINE MIR 162 261 -1 * 1823 154 0 72 chr1 102597086 102597417 -179596247 - AluJb SINE Alu -5 307 1 225 0 0 0 chr1 102597561 102597586 -179596078 + (T)n Simple_repeat Simple_repeat 1 25 0 399 41 0 0 chr1 102598127 102598176 -179595488 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr1 102598285 102598306 -179595358 + AT_rich Low_complexity Low_complexity 1 21 0 776 220 50 0 chr1 102598375 102598516 -179595148 + AluJb SINE Alu 135 282 -30 227 111 0 22 chr1 102598519 102598564 -179595100 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 244 273 15 15 chr1 102598582 102598648 -179595016 - L2 LINE L2 -3 3269 3204 360 176 103 109 chr1 102598700 102598865 -179594799 - MIR SINE MIR -24 238 75 1523 282 186 42 chr1 102599006 102599431 -179594233 + L2 LINE L2 1843 2206 -1107 3623 162 13 2 chr1 102599431 102600037 -179593627 - MER90 LTR ERV1 0 614 2 1523 282 186 42 chr1 102600037 102600859 -179592805 + L2 LINE L2 2206 3295 -18 279 198 0 142 chr1 102602775 102602881 -179590783 + L2 LINE L2 3223 3313 0 334 238 71 0 chr1 102603943 102604027 -179589637 + L2 LINE L2 3222 3311 -2 435 275 113 87 chr1 102604154 102604499 -179589165 - L1ME4a LINE L1 -72 6049 5696 1759 155 10 26 chr1 102604553 102604856 -179588808 - AluJo SINE Alu -14 298 1 352 231 22 11 chr1 102605066 102605157 -179588507 - MER94 DNA DNA -20 114 23 1041 211 151 107 chr1 102605280 102605929 -179587735 - L2 LINE L2 -1 3312 2618 1288 178 47 22 chr1 102606444 102606747 -179586917 - AluJo SINE Alu 0 310 1 2156 131 0 0 chr1 102607115 102607412 -179586252 + AluSx SINE Alu 1 297 -15 348 255 27 60 chr1 102607439 102607588 -179586076 + MIR SINE MIR 81 224 -38 1258 290 200 39 chr1 102609227 102610395 -179583269 + L2 LINE L2 1638 3094 -219 1730 164 45 14 chr1 102610395 102610682 -179582982 + AluJo SINE Alu 3 298 -14 1258 290 200 39 chr1 102610682 102610945 -179582719 + L2 LINE L2 3094 3313 0 191 293 50 20 chr1 102611523 102611622 -179582042 + L2 LINE L2 2381 2482 -832 432 233 22 0 chr1 102611631 102611721 -179581943 + MIR SINE MIR 2 93 -169 188 379 30 0 chr1 102611786 102611852 -179581812 + L2 LINE L2 2569 2636 -678 512 239 117 32 chr1 102612428 102612675 -179580989 - L1MA9 LINE L1 -38 6274 6007 318 298 44 9 chr1 102612863 102612977 -179580687 + MIR3 SINE MIR 87 204 -4 2242 107 7 0 chr1 102617230 102617520 -179576144 + AluSx SINE Alu 1 292 -20 602 293 143 62 chr1 102617522 102618263 -179575401 - L2 LINE L2 -427 2887 2070 2214 100 13 7 chr1 102618263 102618564 -179575100 + AluSg SINE Alu 1 303 -7 602 293 143 62 chr1 102618564 102618657 -179575007 - L2 LINE L2 -1244 2070 1986 3435 90 21 17 chr1 102618730 102619255 -179574409 + L1MA2 LINE L1 5539 6060 -244 1697 176 0 4 chr1 102619255 102619527 -179574137 + AluJb SINE Alu 31 301 -11 3435 90 21 17 chr1 102619527 102619608 -179574056 + L1MA2 LINE L1 6060 6139 -165 1588 156 7 69 chr1 102619608 102619897 -179573767 + AluSx SINE Alu 33 303 -9 3435 90 21 17 chr1 102619897 102620051 -179573613 + L1MA2 LINE L1 6139 6303 -1 21 36 0 0 chr1 102620065 102620093 -179573571 + AT_rich Low_complexity Low_complexity 1 28 0 711 274 42 6 chr1 102620350 102620518 -179573146 + MER5B DNA MER1_type 5 178 0 22 56 0 0 chr1 102620527 102620563 -179573101 + AT_rich Low_complexity Low_complexity 1 36 0 191 241 120 131 chr1 102621601 102621792 -179571872 + MER5A DNA MER1_type 1 189 0 2142 137 0 0 chr1 102622332 102622631 -179571033 + AluSc SINE Alu 1 299 -10 367 222 362 18 chr1 102623564 102623785 -179569879 - L2 LINE L2 0 3313 3017 484 325 101 37 chr1 102623816 102624142 -179569522 - L2 LINE L2 -9 3263 2917 279 0 0 0 chr1 102624342 102624373 -179569291 + (TG)n Simple_repeat Simple_repeat 2 32 0 225 295 39 0 chr1 102629459 102629537 -179564127 - L3b LINE CR1 -250 1333 1253 195 172 237 0 chr1 102630177 102630270 -179563394 + MIR SINE MIR 121 235 -27 379 285 106 49 chr1 102630659 102630905 -179562759 + L2 LINE L2 2844 3103 -169 367 306 117 0 chr1 102631145 102631256 -179562408 + L2 LINE L2 3147 3270 -2 2192 115 3 7 chr1 102631452 102631757 -179561907 - AluSx SINE Alu -8 304 1 1148 117 7 0 chr1 102632063 102632252 -179561412 - AluSp SINE Alu 0 317 128 303 254 148 41 chr1 102632416 102632585 -179561079 + L1ME4a LINE L1 5843 6029 -92 217 167 48 0 chr1 102633345 102633387 -179560277 + MIR SINE MIR 95 138 -124 180 0 0 0 chr1 102633684 102633704 -179559960 + (CA)n Simple_repeat Simple_repeat 1 20 0 301 299 106 93 chr1 102636021 102636332 -179557332 - L1M2 LINE L1 -5708 1141 827 872 234 194 20 chr1 102636352 102636600 -179557064 - AluJo SINE Alu -10 292 2 2317 87 10 3 chr1 102636626 102636935 -179556729 + AluSq SINE Alu 1 311 -2 361 235 0 12 chr1 102637024 102637105 -179556559 + MER116 DNA Mariner 1 80 0 223 322 116 8 chr1 102639224 102639345 -179554319 + MIR3 SINE MIR 6 139 -69 231 332 111 57 chr1 102639456 102639538 -179554126 - L2 LINE L2 -353 2961 2885 3395 161 16 16 chr1 102639538 102640096 -179553568 - MER74A LTR ERVL 0 558 1 231 332 111 57 chr1 102640096 102640275 -179553389 - L2 LINE L2 -429 2885 2686 308 308 49 14 chr1 102640331 102640474 -179553190 - L2 LINE L2 -815 2499 2352 186 290 86 21 chr1 102640820 102640913 -179552751 + MIR3 SINE MIR 93 191 -17 350 285 7 44 chr1 102641507 102641644 -179552020 + L2 LINE L2 3182 3313 0 338 286 127 0 chr1 102641639 102641765 -179551899 - MIR SINE MIR -62 200 59 * 191 392 14 0 chr1 102642934 102643008 -179550656 - MIR SINE MIR -118 90 16 1929 144 26 7 chr1 102643179 102643484 -179550180 - AluJo SINE Alu -1 311 1 576 223 95 20 chr1 102643508 102643656 -179550008 - MIR SINE MIR -84 178 20 261 57 0 0 chr1 102643714 102643749 -179549915 + (CA)n Simple_repeat Simple_repeat 1 35 0 372 225 22 80 chr1 102643791 102643929 -179549735 - L1MB7 LINE L1 -3 6175 6046 * 5244 190 114 7 chr1 102643925 102645621 -179548043 - L1ME1 LINE L1 -216 5950 4076 299 356 37 5 chr1 102646088 102646276 -179547388 + L2 LINE L2 2871 3064 -208 207 125 0 0 chr1 102647815 102647855 -179545809 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 393 22 0 0 chr1 102648305 102648351 -179545313 + (TG)n Simple_repeat Simple_repeat 2 47 0 544 250 162 0 chr1 102648429 102648577 -179545087 + MER5A DNA MER1_type 18 189 0 275 273 111 10 chr1 102649163 102649262 -179544402 - L2 LINE L2 -9 3263 3155 439 298 120 31 chr1 102649276 102649501 -179544163 - MIR SINE MIR -8 254 10 328 256 51 0 chr1 102649511 102649589 -179544075 + L2 LINE L2 3190 3271 -1 195 297 155 20 chr1 102650340 102650488 -179543176 - MIR SINE MIR -94 168 1 1257 123 11 0 chr1 102650580 102650759 -179542905 + L1PA3 LINE L1 5975 6155 0 3123 106 12 7 chr1 102650880 102651306 -179542358 + MSTA LTR MaLR 1 428 0 466 257 21 21 chr1 102651314 102651458 -179542206 + MIR SINE MIR 118 261 -1 544 276 113 39 chr1 102652216 102652499 -179541165 - L2 LINE L2 0 3313 3010 646 265 140 36 chr1 102653051 102653329 -179540335 - MLT1J2 LTR MaLR -122 328 22 210 231 77 0 chr1 102653415 102653467 -179540197 + L2 LINE L2 3216 3271 -1 335 309 0 11 chr1 102654287 102654381 -179539283 + L2 LINE L2 3168 3260 -12 1518 162 39 84 chr1 102654976 102655358 -179538306 - MLT1A1 LTR MaLR 0 365 1 183 226 29 128 chr1 102655868 102655970 -179537694 - L3 LINE CR1 -157 1420 1329 435 341 91 22 chr1 102657119 102657480 -179536184 - L2 LINE L2 -25 3247 2862 404 226 12 0 chr1 102657844 102657928 -179535736 + MIR SINE MIR 27 111 -151 889 162 15 171 chr1 102658080 102658407 -179535257 - MER33 DNA MER1_type 0 324 49 408 212 62 18 chr1 102658489 102658602 -179535062 + MIR SINE MIR 75 192 -70 244 273 78 0 chr1 102658637 102658714 -179534950 + L2 LINE L2 2926 3008 -264 678 193 15 0 chr1 102658736 102658871 -179534793 - L1MB7 LINE L1 -7 6177 6041 2059 107 6 22 chr1 102658929 102659247 -179534417 - L1MA5 LINE L1 0 6300 5988 240 347 0 57 chr1 102659247 102659371 -179534293 + L2 LINE L2 2996 3112 -160 279 175 127 43 chr1 102659441 102659535 -179534129 + HsTC2 DNA Tc2 1 1835 -63 1994 155 3 3 chr1 102661092 102661401 -179532263 + AluJb SINE Alu 1 309 -3 2449 39 0 7 chr1 102661401 102661754 -179531910 + AluY SINE Alu 1 351 0 1178 229 98 19 chr1 102662583 102662949 -179530715 + L1MC4 LINE L1 7513 7907 -135 286 311 197 12 chr1 102663000 102663244 -179530420 + L1MC5 LINE L1 5613 5901 -1907 183 80 0 0 chr1 102663245 102663270 -179530394 + (TA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 102663321 102663342 -179530322 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 102663461 102663482 -179530182 + AT_rich Low_complexity Low_complexity 1 21 0 4788 197 26 72 chr1 102663701 102665264 -179528400 + L1MC5 LINE L1 6429 7917 -44 296 309 113 57 chr1 102666110 102666340 -179527324 - L2 LINE L2 -3 3269 3027 2073 123 3 10 chr1 102666377 102666677 -179526987 + AluSx SINE Alu 1 298 -14 950 210 65 0 chr1 102667167 102667367 -179526297 - MER20 DNA MER1_type -5 214 2 727 316 15 27 chr1 102667400 102667663 -179526001 - MIR SINE MIR -2 260 1 1855 126 4 0 chr1 102667868 102668123 -179525541 - AluSx SINE Alu -56 256 1 395 288 43 37 chr1 102668533 102668696 -179524968 + MIR SINE MIR 49 212 -50 1947 148 0 3 chr1 102668897 102669188 -179524476 + AluJb SINE Alu 1 290 -22 1978 102 4 0 chr1 102669190 102669445 -179524219 + AluSg SINE Alu 42 297 -13 606 171 0 41 chr1 102669797 102669920 -179523744 - MIR SINE MIR -110 152 35 246 32 0 0 chr1 102670026 102670042 -179523622 + (TG)n Simple_repeat Simple_repeat 1 47 0 246 32 0 0 chr1 102670042 102670073 -179523591 + (TG)n Simple_repeat Simple_repeat 1 31 0 340 191 21 11 chr1 102670224 102670318 -179523346 + GA-rich Low_complexity Low_complexity 4 98 0 749 176 8 0 chr1 102671241 102671366 -179522298 + FLAM_A SINE Alu 8 133 -9 615 266 41 0 chr1 102671588 102671757 -179521907 - MER69A DNA AcHobo -1 176 1 351 322 154 14 chr1 102673067 102673275 -179520389 - MIR SINE MIR 0 262 26 2425 71 86 0 chr1 102673342 102673678 -179519986 - L1PA13 LINE L1 -4 6159 5795 710 320 26 23 chr1 102673960 102674182 -179519482 + L2 LINE L2 2239 2464 -850 1308 163 87 109 chr1 102674182 102674642 -179519022 - LTR7 LTR ERV1 0 450 1 710 320 26 23 chr1 102674642 102674725 -179518939 + L2 LINE L2 2464 2545 -769 24 32 0 0 chr1 102675351 102675382 -179518282 + AT_rich Low_complexity Low_complexity 1 31 0 432 0 0 0 chr1 102675468 102675516 -179518148 + (TG)n Simple_repeat Simple_repeat 2 49 0 903 151 0 0 chr1 102676156 102676295 -179517369 - FRAM SINE Alu -12 164 26 343 237 186 17 chr1 102677118 102677236 -179516428 + MIR SINE MIR 96 233 -29 198 246 16 16 chr1 102677306 102677367 -179516297 - L2 LINE L2 -1103 2211 2151 1404 274 57 22 chr1 102677367 102677971 -179515693 + L2 LINE L2 2680 3313 0 415 288 106 8 chr1 102678006 102678138 -179515526 - MER5A DNA MER1_type -10 179 35 685 269 48 55 chr1 102679675 102679928 -179513736 - MIR SINE MIR -13 249 1 286 274 163 47 chr1 102679929 102680119 -179513545 + MIR SINE MIR 1 212 -50 4536 180 35 5 chr1 102680702 102681820 -179511844 + L1MB1 LINE L1 5009 6165 -3 840 267 173 28 chr1 102682652 102683150 -179510514 - MLT1L LTR MaLR -4 611 42 445 232 116 0 chr1 102684336 102684448 -179509216 - MIR3 SINE MIR -6 202 78 249 284 179 0 chr1 102684587 102684682 -179508982 + MIR SINE MIR 137 248 -14 246 234 207 45 chr1 102684725 102684836 -179508828 + MIR3 SINE MIR 3 131 -77 452 245 168 7 chr1 102684898 102685053 -179508611 - MER5A DNA MER1_type 0 189 10 230 196 0 36 chr1 102686143 102686199 -179507465 + GA-rich Low_complexity Low_complexity 3 56 0 2392 66 3 0 chr1 102687163 102687464 -179506200 - AluSp SINE Alu -11 302 1 1411 248 184 19 chr1 102687543 102688112 -179505552 + MLT2F LTR ERVL 1 663 0 2254 97 0 3 chr1 102688588 102688899 -179504765 - AluSq SINE Alu -3 310 1 285 257 200 9 chr1 102689039 102689144 -179504520 - MER5B DNA MER1_type 0 178 54 745 254 102 26 chr1 102689326 102689708 -179503956 + L1ME4a LINE L1 5484 5894 -227 1984 106 18 0 chr1 102690412 102690696 -179502968 - AluSc SINE Alu -16 293 5 244 314 49 20 chr1 102692228 102692330 -179501334 + MIR SINE MIR 22 126 -136 2018 93 10 0 chr1 102692553 102692844 -179500820 - AluY SINE Alu -17 294 1 1639 130 8 12 chr1 102693910 102694164 -179499500 - AluSx SINE Alu -32 280 28 21 89 0 0 chr1 102694267 102694323 -179499341 + GC_rich Low_complexity Low_complexity 1 56 0 237 201 28 56 chr1 102694327 102694506 -179499158 + (CGCGG)n Simple_repeat Simple_repeat 4 177 0 903 151 0 0 chr1 102695189 102695328 -179498336 - FRAM SINE Alu -12 164 26 343 237 186 17 chr1 102696151 102696269 -179497395 + MIR SINE MIR 96 233 -29 211 259 37 37 chr1 102696339 102696420 -179497244 - L2 LINE L2 -1103 2211 2131 * 1344 275 56 25 chr1 102696400 102697007 -179496657 + L2 LINE L2 2680 3313 0 349 176 0 0 chr1 102697184 102697235 -179496429 - AluSx SINE Alu -251 51 1 619 249 40 40 chr1 102697251 102697428 -179496236 - MIR SINE MIR -79 183 7 214 189 113 38 chr1 102697426 102697479 -179496185 - MIR SINE MIR -5 257 201 * 1155 157 185 17 chr1 102697485 102697772 -179495892 - MER47A DNA MER2_type -12 354 20 614 268 45 6 chr1 102697780 102697959 -179495705 - MIR SINE MIR -67 195 10 190 312 55 37 chr1 102698001 102698110 -179495554 - L2 LINE L2 -11 3261 3151 523 243 196 47 chr1 102698661 102698875 -179494789 + MIR SINE MIR 17 262 0 472 236 179 7 chr1 102699478 102699618 -179494046 - MER5A DNA MER1_type 0 189 26 822 147 35 0 chr1 102699703 102699846 -179493818 + L1ME1 LINE L1 5330 5477 -689 14144 156 64 6 chr1 102699854 102702140 -179491524 - Tigger1 DNA MER2_type 0 2418 1 2473 210 54 63 chr1 102702140 102702215 -179491449 + L1ME1 LINE L1 5487 5561 -605 1998 97 10 13 chr1 102702215 102702513 -179491151 - AluSx SINE Alu -7 305 9 2473 210 54 63 chr1 102702513 102702926 -179490738 + L1ME1 LINE L1 5561 5971 -195 2117 84 7 7 chr1 102702926 102703234 -179490430 - AluSq SINE Alu 0 308 1 2473 210 54 63 chr1 102703234 102703429 -179490235 + L1ME1 LINE L1 5971 6166 0 448 186 23 0 chr1 102703434 102703520 -179490144 + AluJ/FLAM SINE Alu 2 89 -223 258 146 104 0 chr1 102704072 102704120 -179489544 + FLAM SINE Alu 73 125 -8 298 264 58 58 chr1 102704685 102704806 -179488858 + L2 LINE L2 2979 3099 -173 666 105 0 0 chr1 102705622 102705727 -179487937 + (CA)n Simple_repeat Simple_repeat 2 106 0 4902 199 39 21 chr1 102706102 102706442 -179487222 - MER45B DNA AcHobo -541 1040 707 2197 102 0 0 chr1 102706442 102706737 -179486927 - AluSg SINE Alu -15 295 1 4902 199 39 21 chr1 102706737 102707418 -179486246 - MER45B DNA AcHobo -874 707 1 651 223 66 51 chr1 102707626 102707823 -179485841 - MIR SINE MIR -15 247 48 546 182 0 69 chr1 102707827 102707986 -179485678 - MER45B DNA AcHobo -66 974 827 948 161 2 11 chr1 102708651 102708815 -179484849 + MLT1A1 LTR MaLR 1 142 -223 843 104 0 37 chr1 102708815 102708949 -179484715 + AluSg/x SINE Alu 170 298 -14 1049 148 32 60 chr1 102708955 102709171 -179484493 + MLT1A1 LTR MaLR 156 365 0 468 51 0 0 chr1 102709225 102709284 -179484380 + (CA)n Simple_repeat Simple_repeat 2 60 0 374 276 126 61 chr1 102709415 102709629 -179484035 + L2 LINE L2 3086 3313 0 816 153 0 0 chr1 102710826 102710950 -179482714 - AluJb SINE Alu -183 129 6 6543 130 1 1 chr1 102710973 102712253 -179481411 - L1PB1 LINE L1 0 6151 4872 424 254 17 0 chr1 102712259 102712377 -179481287 - L1ME4a LINE L1 -294 5827 5708 975 238 36 22 chr1 102714539 102714762 -179478902 + MIR SINE MIR 37 262 0 588 355 52 4 chr1 102716185 102716416 -179477248 - MIR SINE MIR 0 262 21 1682 177 10 0 chr1 102716559 102716864 -179476800 + AluJo SINE Alu 1 308 -4 1976 128 3 7 chr1 102716866 102717171 -179476493 + AluSq SINE Alu 1 304 -9 230 234 0 0 chr1 102717597 102717644 -179476020 - MER116 DNA Mariner -26 54 8 1140 151 102 36 chr1 102718137 102718401 -179475263 - AluJo SINE Alu 0 312 50 2201 96 0 0 chr1 102718594 102718887 -179474777 - AluSc SINE Alu -16 293 1 1682 139 9 65 chr1 102719208 102719531 -179474133 - AluJo SINE Alu -7 305 1 2008 145 0 0 chr1 102719536 102719840 -179473824 - AluJb SINE Alu -7 305 2 330 281 39 31 chr1 102719960 102720088 -179473576 - L2 LINE L2 -1010 2304 2176 787 276 78 42 chr1 102720180 102720513 -179473151 + MLT1J2 LTR MaLR 52 396 -54 180 348 114 27 chr1 102720633 102720817 -179472847 - L2 LINE L2 -1233 2081 1882 488 290 95 61 chr1 102722168 102722648 -179471016 - L3 LINE CR1 -51 1526 974 1930 124 50 17 chr1 102722688 102722987 -179470677 - AluJo SINE Alu -3 309 1 34 65 0 0 chr1 102723963 102724025 -179469639 + AT_rich Low_complexity Low_complexity 1 62 0 1935 94 0 4 chr1 102724193 102724447 -179469217 - AluSx SINE Alu -21 291 39 868 276 32 38 chr1 102724456 102724796 -179468868 + HAL1b LINE L1 326 663 -685 1147 263 152 29 chr1 102724927 102725475 -179468189 + MLT1L LTR MaLR 1 615 0 5811 110 34 16 chr1 102727506 102728434 -179465230 + L1PA13 LINE L1 5222 6161 -2 267 196 0 0 chr1 102728467 102728518 -179465146 - L1MC5 LINE L1 -183 7778 7728 919 185 6 11 chr1 102728825 102729003 -179464661 + MER96B DNA MER1_type? 1 177 -240 180 273 91 0 chr1 102729051 102729117 -179464547 - MIR SINE MIR -44 218 147 238 283 0 17 chr1 102729661 102729721 -179463943 - L2 LINE L2 -60 3253 3195 4596 214 59 115 chr1 102730562 102730739 -179462925 + L1MB8 LINE L1 3287 3472 -2674 1424 149 93 123 chr1 102730739 102731203 -179462461 + LTR7 LTR ERV1 1 450 0 4596 214 59 115 chr1 102731203 102731274 -179462390 + L1MB8 LINE L1 3472 3545 -2601 2478 60 0 0 chr1 102731274 102731572 -179462092 + AluY SINE Alu 1 298 -13 4596 214 59 115 chr1 102731572 102731675 -179461989 + L1MB8 LINE L1 3545 3652 -2494 2568 57 0 10 chr1 102731675 102731989 -179461675 + AluY SINE Alu 1 311 0 4596 214 59 115 chr1 102731989 102732231 -179461433 + L1MB8 LINE L1 3652 3906 -2240 700 210 0 22 chr1 102732231 102732369 -179461295 + AluJo SINE Alu 102 236 -76 4596 214 59 115 chr1 102732369 102733486 -179460178 + L1MB8 LINE L1 3906 5034 -1112 1361 182 7 81 chr1 102733517 102733824 -179459840 + AluJb SINE Alu 27 310 -2 4433 169 95 16 chr1 102733825 102734869 -179458795 + L1MB8 LINE L1 5058 6177 -1 25 31 0 0 chr1 102734897 102734929 -179458735 + AT_rich Low_complexity Low_complexity 1 32 0 1097 253 96 72 chr1 102735010 102735842 -179457822 - L2 LINE L2 0 3313 2474 2208 118 0 3 chr1 102735876 102736173 -179457491 + AluSq SINE Alu 1 296 -17 625 241 122 27 chr1 102736726 102736950 -179456714 - L1ME4a LINE L1 -188 5933 5673 2261 129 148 20 chr1 102736950 102737219 -179456445 - LTR54B LTR ERV1 -2 496 263 2048 134 0 16 chr1 102737219 102737533 -179456131 - AluSx SINE Alu -3 309 1 2261 129 148 20 chr1 102737533 102737703 -179455961 - LTR54B LTR ERV1 -235 263 1 625 241 122 27 chr1 102737703 102737773 -179455891 - L1ME4a LINE L1 -448 5673 5611 1122 125 0 28 chr1 102737782 102737958 -179455706 - FRAM SINE Alu -9 167 1 220 273 61 0 chr1 102738133 102738199 -179455465 + MIR SINE MIR 97 166 -96 216 169 31 62 chr1 102739803 102739828 -179453836 + CT-rich Low_complexity Low_complexity 1 25 -38 1054 168 0 19 chr1 102739828 102739989 -179453675 - FRAM SINE Alu -7 159 2 216 169 31 62 chr1 102739989 102740028 -179453636 + CT-rich Low_complexity Low_complexity 25 63 0 439 290 206 9 chr1 102740461 102740675 -179452989 + MIR SINE MIR 7 262 0 2220 109 0 7 chr1 102741753 102742056 -179451608 - AluSx SINE Alu -9 303 3 914 118 24 0 chr1 102742124 102742251 -179451413 + AluSp SINE Alu 1 130 -183 771 270 124 20 chr1 102742362 102742718 -179450946 - L1ME4a LINE L1 -34 6087 5695 2143 78 0 11 chr1 102742730 102742998 -179450666 - AluSg SINE Alu -8 302 38 2922 120 21 16 chr1 102743171 102743557 -179450107 + MSTA LTR MaLR 1 391 -37 2310 109 0 0 chr1 102743557 102743859 -179449805 - AluSc SINE Alu -7 302 1 2922 120 21 16 chr1 102743859 102743898 -179449766 + MSTA LTR MaLR 391 428 0 759 261 78 4 chr1 102743984 102744227 -179449437 + MIR SINE MIR 11 260 -2 436 17 17 33 chr1 102744650 102744710 -179448954 + THE1B LTR MaLR 1 59 -305 1332 36 12 0 chr1 102744710 102744876 -179448788 + THE1A-int LTR MaLR 1413 1580 0 2443 96 8 41 chr1 102744876 102745180 -179448484 + THE1A LTR MaLR 1 293 -62 2143 104 0 50 chr1 102745180 102745497 -179448167 + AluSc SINE Alu 1 301 -8 2443 96 8 41 chr1 102745497 102745558 -179448106 + THE1A LTR MaLR 293 354 -1 286 225 12 0 chr1 102745981 102746061 -179447603 + GA-rich Low_complexity Low_complexity 1 81 0 259 315 0 0 chr1 102747379 102747490 -179446174 + GA-rich Low_complexity Low_complexity 1 111 0 211 270 27 40 chr1 102748038 102748112 -179445552 + MIR3 SINE MIR 102 174 -34 23 0 0 0 chr1 102748194 102748217 -179445447 + AT_rich Low_complexity Low_complexity 1 23 0 395 294 105 13 chr1 102748643 102748796 -179444868 + MLT1K LTR MaLR 238 404 -184 4240 189 13 35 chr1 102748810 102749684 -179443980 - MER21B LTR ERV1 -9 854 1 338 217 98 22 chr1 102749684 102749776 -179443888 + MLT1K LTR MaLR 400 498 -90 644 259 144 65 chr1 102749781 102750295 -179443369 - HAL1 LINE L1 -2 2505 1932 1685 137 103 0 chr1 102750295 102750566 -179443098 - AluJo SINE Alu -13 299 1 644 259 144 65 chr1 102750566 102750668 -179442996 - HAL1 LINE L1 -575 1932 1840 818 267 90 6 chr1 102750757 102751010 -179442654 + MLT1J1 LTR MaLR 99 378 -68 1168 264 42 91 chr1 102751011 102751682 -179441982 - HAL1 LINE L1 -1449 1058 421 616 275 275 9 chr1 102751794 102752132 -179441532 + LTR16A LTR ERVL 16 443 -7 311 309 118 13 chr1 102752631 102752783 -179440881 + L2 LINE L2 2914 3081 -191 2572 40 7 3 chr1 102752947 102753244 -179440420 + AluY SINE Alu 1 298 -13 788 255 87 13 chr1 102753621 102753852 -179439812 - MIR SINE MIR 0 262 15 439 299 90 0 chr1 102754914 102755048 -179438616 + L2 LINE L2 3121 3266 -6 344 314 49 1 chr1 102755964 102756149 -179437515 + L1MC/D LINE L1 5271 5462 -739 243 303 76 15 chr1 102756477 102756609 -179437055 + L1 LINE L1 4973 5112 -1034 501 294 79 79 chr1 102756874 102757303 -179436361 + L2 LINE L2 2885 3313 0 1312 144 0 5 chr1 102757536 102757738 -179435926 - Tigger5 DNA MER2_type 0 2323 2123 512 113 0 0 chr1 102757759 102757830 -179435834 - Tigger5 DNA MER2_type -2214 109 39 2129 130 7 0 chr1 102758439 102758740 -179434924 + AluSx SINE Alu 1 303 -9 301 87 0 0 chr1 102758779 102758825 -179434839 - Alu SINE Alu 0 302 257 261 83 0 0 chr1 102758827 102758863 -179434801 - AluSp SINE Alu -165 138 103 1135 93 0 0 chr1 102758874 102759013 -179434651 - AluSq/x SINE Alu -173 139 1 334 271 167 14 chr1 102759265 102759486 -179434178 - L1MC4a LINE L1 -1875 5933 5679 228 255 153 0 chr1 102759557 102759655 -179434009 + L1M4 LINE L1 2506 2618 -3528 2363 87 0 3 chr1 102759876 102760186 -179433478 + AluSc SINE Alu 1 309 0 450 193 76 130 chr1 102760226 102760283 -179433381 + L1M4 LINE L1 2865 2923 -3223 1948 124 0 0 chr1 102760283 102760557 -179433107 + AluSx SINE Alu 39 312 0 450 193 76 130 chr1 102760557 102760800 -179432864 + L1M4 LINE L1 2923 3149 -2997 352 268 52 26 chr1 102760874 102761027 -179432637 - LTR33A LTR ERVL -5 518 362 216 189 0 78 chr1 102761226 102761316 -179432348 + A-rich Low_complexity Low_complexity 2 84 0 345 282 40 47 chr1 102761406 102761555 -179432109 - L1MC4a LINE L1 -487 5634 5487 225 287 128 0 chr1 102761645 102761739 -179431925 + MIR SINE MIR 157 262 0 289 255 190 23 chr1 102761845 102762229 -179431435 - L1MC4a LINE L1 -798 5348 4901 189 0 0 0 chr1 102762599 102762620 -179431044 + (GA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr1 102763278 102763300 -179430364 + (CA)n Simple_repeat Simple_repeat 1 22 0 1922 138 24 0 chr1 102763704 102763994 -179429670 - AluJb SINE Alu -15 297 1 648 303 106 0 chr1 102764839 102765123 -179428541 + L2 LINE L2 2467 2780 -534 2440 248 61 32 chr1 102765185 102765438 -179428226 - L1MC4a LINE L1 -1778 6030 5786 2214 129 0 0 chr1 102765438 102765748 -179427916 - AluSg SINE Alu 0 310 1 2440 248 61 32 chr1 102765748 102766249 -179427415 - L1MC4a LINE L1 -2022 5786 5254 479 266 101 54 chr1 102766296 102766612 -179427052 + L2 LINE L2 2853 3183 -130 1983 196 91 26 chr1 102766622 102767082 -179426582 + LTR2B LTR ERV1 1 490 0 2567 126 3 10 chr1 102767082 102767472 -179426192 + Harlequin LTR ERV1 1 387 -6509 * 4306 62 6 4 chr1 102767465 102768010 -179425654 + Harlequin LTR ERV1 263 808 -6088 303 75 0 0 chr1 102768006 102768046 -179425618 + Harlequin LTR ERV1 769 808 -6088 * 284 100 0 0 chr1 102768042 102768082 -179425582 + Harlequin LTR ERV1 769 808 -6088 * 284 100 0 0 chr1 102768078 102768118 -179425546 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768114 102768154 -179425510 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768150 102768190 -179425474 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768186 102768226 -179425438 + Harlequin LTR ERV1 769 808 -6088 * 303 75 0 0 chr1 102768222 102768262 -179425402 + Harlequin LTR ERV1 769 808 -6088 303 75 0 0 chr1 102768258 102768298 -179425366 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768294 102768334 -179425330 + Harlequin LTR ERV1 769 808 -6088 * 275 83 0 0 chr1 102768334 102768370 -179425294 + Harlequin LTR ERV1 773 808 -6088 * 303 75 0 0 chr1 102768366 102768406 -179425258 + Harlequin LTR ERV1 769 808 -6088 303 75 0 0 chr1 102768402 102768442 -179425222 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768438 102768478 -179425186 + Harlequin LTR ERV1 769 808 -6088 * 284 100 0 0 chr1 102768474 102768514 -179425150 + Harlequin LTR ERV1 769 808 -6088 258 146 0 0 chr1 102768509 102768550 -179425114 + Harlequin LTR ERV1 765 805 -7008 * 284 100 0 0 chr1 102768546 102768586 -179425078 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768582 102768622 -179425042 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768618 102768658 -179425006 + Harlequin LTR ERV1 769 808 -6088 284 100 0 0 chr1 102768654 102768694 -179424970 + Harlequin LTR ERV1 769 808 -6088 258 146 0 0 chr1 102768689 102768730 -179424934 + Harlequin LTR ERV1 765 805 -7008 * 4357 58 47 20 chr1 102768726 102769271 -179424393 + Harlequin LTR ERV1 769 1335 -5561 213 39 0 0 chr1 102769271 102769297 -179424367 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4357 58 47 20 chr1 102769297 102769388 -179424276 + Harlequin LTR ERV1 1335 1422 -5474 * 6295 78 6 7 chr1 102769369 102770256 -179423408 + Harlequin LTR ERV1 1806 2691 -4205 233 242 118 7 chr1 102770983 102771214 -179422450 + L2 LINE L2 278 584 -2730 1547 255 94 19 chr1 102771232 102771773 -179421891 + L2 LINE L2 2047 2628 -686 562 281 138 0 chr1 102771861 102772078 -179421586 - HERV16 LTR ERVL -3784 1212 966 1879 198 89 36 chr1 102772079 102772590 -179421074 + MLT1E LTR MaLR 3 593 0 1046 308 23 18 chr1 102772884 102773274 -179420390 - LTR16A LTR ERVL 0 450 59 222 313 61 0 chr1 102773638 102773737 -179419927 - MIR SINE MIR -62 200 96 1477 227 74 153 chr1 102773816 102774339 -179419325 + L2 LINE L2 2168 2730 -583 568 152 0 0 chr1 102774339 102774418 -179419246 + FLAM SINE Alu 38 116 -27 1477 227 74 153 chr1 102774418 102774431 -179419233 + L2 LINE L2 2730 2742 -571 1554 208 25 0 chr1 102774431 102774715 -179418949 + AluJo SINE Alu 1 291 -21 1477 227 74 153 chr1 102774715 102775313 -179418351 + L2 LINE L2 2742 3313 0 23 0 0 0 chr1 102775674 102775697 -179417967 + AT_rich Low_complexity Low_complexity 1 23 0 745 338 38 55 chr1 102776107 102776761 -179416903 + L1MEc LINE L1 37 679 -5717 648 263 14 5 chr1 102776833 102777042 -179416622 + L1MEc LINE L1 674 884 -5512 322 210 86 12 chr1 102777260 102777341 -179416323 - MIR3 SINE MIR -11 197 111 233 104 0 104 chr1 102777442 102777490 -179416174 + LTR11 LTR ERV 56 98 -586 855 309 46 18 chr1 102777490 102777881 -179415783 - L2 LINE L2 -59 3254 2853 260 362 109 36 chr1 102778067 102778288 -179415376 + MIR SINE MIR 20 256 -6 404 256 34 26 chr1 102778368 102778485 -179415179 - L2 LINE L2 -5 3308 3191 2056 170 70 32 chr1 102778492 102778934 -179414730 - LTR2B LTR ERV1 0 490 32 33850 64 6 5 chr1 102778953 102783160 -179410504 - Harlequin LTR ERV1 0 6896 2687 562 261 78 59 chr1 102783284 102783606 -179410058 - L2 LINE L2 -618 2696 2369 31 26 0 0 chr1 102785008 102785046 -179408618 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr1 102785068 102785094 -179408570 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr1 102785976 102786000 -179407664 + (T)n Simple_repeat Simple_repeat 1 24 0 375 141 0 0 chr1 102787262 102787326 -179406338 + (GGCTG)n Simple_repeat Simple_repeat 1 64 0 2276 105 0 0 chr1 102788890 102789196 -179404468 - AluY SINE Alu -5 306 1 790 178 52 46 chr1 102790756 102790930 -179402734 + FAM SINE Alu 1 175 0 699 294 77 8 chr1 102791215 102791463 -179402201 + L3b LINE CR1 1260 1524 -59 407 254 72 29 chr1 102792932 102793070 -179400594 + L2 LINE L2 3166 3309 -4 324 305 51 68 chr1 102793229 102793406 -179400258 + MIR3 SINE MIR 8 181 -27 216 0 0 0 chr1 102793415 102793439 -179400225 + (A)n Simple_repeat Simple_repeat 1 24 0 1814 266 42 19 chr1 102793458 102793981 -179399683 + HAL1 LINE L1 11 545 -1962 802 251 187 9 chr1 102794301 102795465 -179398199 + HAL1 LINE L1 618 2023 -484 917 113 0 0 chr1 102795469 102795602 -179398062 + AluY SINE Alu 179 311 0 1178 256 156 7 chr1 102795630 102796041 -179397623 + HAL1 LINE L1 2036 2507 0 1659 125 39 4 chr1 102797586 102797842 -179395822 - AluJb SINE Alu -22 290 26 182 238 71 0 chr1 102799164 102799206 -179394458 - L2 LINE L2 -5 3267 3223 209 261 46 31 chr1 102801086 102801151 -179392513 + MIR3 SINE MIR 111 176 -32 1604 152 47 20 chr1 102802085 102802381 -179391283 - AluJb SINE Alu -8 304 1 223 361 56 35 chr1 102802431 102802719 -179390945 + L2 LINE L2 2554 2847 -467 252 122 0 0 chr1 102802988 102803029 -179390635 + (T)n Simple_repeat Simple_repeat 1 41 0 235 292 115 0 chr1 102803030 102803126 -179390538 + L2 LINE L2 3164 3270 -2 213 292 124 18 chr1 102803244 102803357 -179390307 - MIR SINE MIR -114 148 24 1437 197 52 0 chr1 102803485 102803775 -179389889 + MER58B DNA MER1_type 37 341 0 205 39 0 0 chr1 102804110 102804136 -179389528 - MER91B DNA MER1_type -129 61 36 975 207 13 48 chr1 102805545 102805772 -179387892 + MER20 DNA MER1_type 1 219 0 1042 42 0 0 chr1 102805940 102806058 -179387606 + AluY SINE Alu 2 119 -192 224 30 30 0 chr1 102806058 102806091 -179387573 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 581 183 84 21 chr1 102806132 102806274 -179387390 + L1MC5 LINE L1 7699 7849 -112 2287 91 0 0 chr1 102806337 102806623 -179387041 + AluSx SINE Alu 1 286 -26 2398 107 0 0 chr1 102807620 102807930 -179385734 + AluSx SINE Alu 1 310 -2 600 255 274 5 chr1 102808027 102808231 -179385433 + MIR SINE MIR 3 261 -1 2210 97 3 23 chr1 102808795 102809103 -179384561 - AluSg SINE Alu -8 302 1 4483 121 11 17 chr1 102809733 102810372 -179383292 + MER41B LTR ERV1 1 635 0 423 318 15 50 chr1 102810669 102810867 -179382797 - MIR3 SINE MIR -16 192 2 1670 146 22 4 chr1 102812751 102813018 -179380646 - Tigger5 DNA MER2_type -1 2322 2051 1602 167 45 3 chr1 102813336 102813624 -179380040 - AluJo SINE Alu -12 300 1 368 242 55 0 chr1 102814030 102814121 -179379543 + MIR3 SINE MIR 84 179 -29 47 33 0 0 chr1 102817558 102817619 -179376045 + AT_rich Low_complexity Low_complexity 1 61 0 613 263 101 35 chr1 102818922 102819150 -179374514 + MIR SINE MIR 20 262 0 21 0 0 0 chr1 102821449 102821470 -179372194 + AT_rich Low_complexity Low_complexity 1 21 0 514 288 26 52 chr1 102821689 102821880 -179371784 + MIR3 SINE MIR 20 205 -3 255 335 167 27 chr1 102822204 102822425 -179371239 + L3b LINE CR1 1321 1572 -11 347 299 30 45 chr1 102823941 102824075 -179369589 + MIR3 SINE MIR 32 163 -45 788 194 17 28 chr1 102824075 102824255 -179369409 + MER5B DNA MER1_type 1 178 0 463 249 60 0 chr1 102824815 102824965 -179368699 - MIR SINE MIR -60 148 23 2176 135 37 0 chr1 102826196 102826523 -179367141 - MER7A DNA MER2_type -9 337 1 22 0 0 0 chr1 102826684 102826706 -179366958 + AT_rich Low_complexity Low_complexity 1 22 0 1883 180 3 0 chr1 102826778 102827083 -179366581 + AluJo SINE Alu 5 310 -2 225 160 20 40 chr1 102827784 102827834 -179365830 + GA-rich Low_complexity Low_complexity 3 51 0 189 287 139 0 chr1 102828994 102829102 -179364562 - MIR SINE MIR -32 230 108 225 295 53 42 chr1 102829209 102829399 -179364265 - MIR SINE MIR -65 197 6 234 0 0 0 chr1 102830365 102830391 -179363273 + (A)n Simple_repeat Simple_repeat 1 26 0 323 257 101 18 chr1 102830953 102831062 -179362602 - MIR SINE MIR -66 142 25 402 21 0 0 chr1 102832605 102832652 -179361012 + (CA)n Simple_repeat Simple_repeat 1 47 0 420 20 0 0 chr1 102832722 102832771 -179360893 + (CA)n Simple_repeat Simple_repeat 1 49 0 285 146 0 0 chr1 102832841 102832889 -179360775 + (CA)n Simple_repeat Simple_repeat 1 48 0 232 293 38 19 chr1 102833883 102833989 -179359675 + MER5B DNA MER1_type 66 173 -5 228 287 66 25 chr1 102835698 102835820 -179357844 - MIR3 SINE MIR -4 204 78 974 200 11 0 chr1 102835877 102836062 -179357602 - MER5A DNA MER1_type -1 188 2 360 304 94 16 chr1 102836836 102837027 -179356637 + MIR SINE MIR 30 235 -27 1763 155 11 4 chr1 102837329 102837606 -179356058 + AluJo SINE Alu 1 279 -33 324 70 0 0 chr1 102837609 102837652 -179356012 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 204 81 0 54 chr1 102837653 102837690 -179355974 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr1 102837694 102837716 -179355948 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 296 224 0 15 chr1 102838201 102838268 -179355396 + MIR3 SINE MIR 143 208 0 230 246 58 72 chr1 102839615 102839753 -179353911 + MER112 DNA MER1_type 102 237 -23 266 224 0 0 chr1 102839756 102839805 -179353859 + MER5B DNA MER1_type 26 74 -104 257 316 219 22 chr1 102840849 102841127 -179352537 - L3 LINE CR1 -85 1492 1160 1281 201 61 77 chr1 102841203 102841582 -179352082 + MLT2D LTR ERVL 1 373 -41 2443 150 21 26 chr1 102841656 102842082 -179351582 + MSTB LTR MaLR 1 424 -2 300 261 8 75 chr1 102842109 102842243 -179351421 - L2 LINE L2 -11 3261 3137 376 280 164 33 chr1 102842272 102842665 -179350999 - L2 LINE L2 -297 3016 2559 200 320 149 41 chr1 102842831 102843050 -179350614 - L3 LINE CR1 -882 695 501 2204 118 96 70 chr1 102843050 102843399 -179350265 - MSTA LTR MaLR 0 428 90 2330 104 3 3 chr1 102843399 102843708 -179349956 - AluSx SINE Alu -3 309 1 2317 101 0 0 chr1 102843718 102844014 -179349650 - AluSx SINE Alu -16 296 1 2204 118 96 70 chr1 102844014 102844070 -179349594 - MSTA LTR MaLR -346 82 1 200 320 149 41 chr1 102844070 102844119 -179349545 - L3 LINE CR1 -1076 501 398 2490 205 114 31 chr1 102844311 102845010 -179348654 - MER21B LTR ERV1 -11 852 96 361 348 52 47 chr1 102845459 102845821 -179347843 + L2 LINE L2 2904 3267 -5 381 325 110 27 chr1 102846845 102847137 -179346527 + L2 LINE L2 2997 3312 -1 294 227 0 15 chr1 102847161 102847227 -179346437 + MER117 DNA MER1_type 49 113 -84 933 208 80 58 chr1 102847296 102847519 -179346145 + MER33 DNA MER1_type 5 238 -2347 2315 94 7 3 chr1 102847519 102847818 -179345846 - AluSq SINE Alu -13 300 1 933 208 80 58 chr1 102847818 102847906 -179345758 + MER33 DNA MER1_type 238 323 -1 359 320 40 20 chr1 102850183 102850333 -179343331 - MIR3 SINE MIR -51 157 5 1491 242 8 22 chr1 102851033 102851434 -179342230 + MLT2C1 LTR ERVL 1 395 -2 279 0 0 0 chr1 102852155 102852186 -179341478 + (TTA)n Simple_repeat Simple_repeat 2 32 0 602 241 113 10 chr1 102852214 102852409 -179341255 + MIR SINE MIR 43 257 -5 194 303 101 8 chr1 102854421 102854540 -179339124 + L2 LINE L2 3142 3271 -1 730 216 11 33 chr1 102855364 102855545 -179338119 - MIR3 SINE MIR -2 206 30 888 177 39 11 chr1 102855587 102855768 -179337896 - MER53 DNA DNA 0 189 4 1936 162 0 13 chr1 102856173 102856488 -179337176 + AluJb SINE Alu 1 311 -1 2033 147 0 16 chr1 102856537 102856851 -179336813 + AluJb SINE Alu 2 310 -2 2793 148 26 8 chr1 102856872 102857373 -179336291 - L1MB7 LINE L1 -13 6171 5662 1208 159 65 0 chr1 102857378 102857610 -179336054 - L1MB7 LINE L1 -598 5576 5330 207 257 257 9 chr1 102859401 102859514 -179334150 - MIR SINE MIR -37 225 85 430 183 0 24 chr1 102859568 102859650 -179334014 + Charlie5 DNA MER1_type 6 85 -2527 412 286 113 11 chr1 102859845 102860030 -179333634 + MIR SINE MIR 48 251 -11 3155 196 85 49 chr1 102860170 102861144 -179332520 - L1MC4 LINE L1 -1 8041 7033 396 133 27 0 chr1 102862328 102862403 -179331261 + MER116 DNA Mariner 1 77 -3 198 0 0 0 chr1 102862816 102862838 -179330826 + (A)n Simple_repeat Simple_repeat 1 22 0 1436 130 39 17 chr1 102863638 102863868 -179329796 + AluSg/x SINE Alu 68 302 -10 289 103 0 0 chr1 102863887 102863926 -179329738 - U2 snRNA snRNA -148 40 2 189 147 0 0 chr1 102865195 102865229 -179328435 + (A)n Simple_repeat Simple_repeat 1 34 0 204 97 0 0 chr1 102867741 102867772 -179325892 + (A)n Simple_repeat Simple_repeat 1 31 0 279 281 46 114 chr1 102868253 102868381 -179325283 + L2 LINE L2 3011 3111 -161 1407 103 70 5 chr1 102868381 102868594 -179325070 - MER30 DNA MER1_type 0 230 4 279 281 46 114 chr1 102868594 102868746 -179324918 + L2 LINE L2 3111 3272 0 1555 161 25 52 chr1 102869471 102869757 -179323907 - AluJo SINE Alu -23 289 12 3231 127 33 14 chr1 102870039 102870557 -179323107 + LTR26B LTR ERV1 1 528 -3 219 262 153 11 chr1 102870998 102871115 -179322549 - MIR SINE MIR -108 100 20 2438 81 3 0 chr1 102871363 102871661 -179322003 + AluSp SINE Alu 1 299 -14 2740 120 51 5 chr1 102871883 102872292 -179321372 + MSTA LTR MaLR 1 428 0 719 275 48 8 chr1 102872418 102872669 -179320995 + MIR SINE MIR 2 262 0 231 250 36 62 chr1 102874825 102874855 -179318809 - MER113 DNA MER1_type? -410 111 82 2474 70 0 7 chr1 102874855 102875156 -179318508 + AluY SINE Alu 1 299 -12 231 250 36 62 chr1 102875156 102875237 -179318427 - MER113 DNA MER1_type? -439 82 3 246 239 0 42 chr1 102875266 102875337 -179318327 - L2 LINE L2 -82 3190 3123 855 152 23 8 chr1 102876529 102876661 -179317003 + AluSq/x SINE Alu 1 134 -179 229 272 111 0 chr1 102876703 102876784 -179316880 + MIR3 SINE MIR 112 201 -7 2081 122 0 7 chr1 102876830 102877125 -179316539 + AluSx SINE Alu 1 293 -19 2145 113 20 0 chr1 102877576 102877868 -179315796 - AluSx SINE Alu -14 298 1 457 292 56 0 chr1 102878378 102878539 -179315125 - MIR3 SINE MIR -2 206 37 498 285 111 8 chr1 102878728 102878963 -179314701 + L2 LINE L2 2804 3062 -251 255 149 0 162 chr1 102879728 102879802 -179313862 + L2 LINE L2 3208 3269 -3 412 294 28 28 chr1 102879878 102880021 -179313643 + MIR SINE MIR 49 191 -71 393 75 0 0 chr1 102881001 102881054 -179312610 + (CCCCAG)n Simple_repeat Simple_repeat 1 53 0 661 312 161 8 chr1 102882104 102882655 -179311009 - L2 LINE L2 -5 3308 2667 865 268 38 0 chr1 102882673 102882908 -179310756 - MIR SINE MIR -1 261 18 278 288 140 36 chr1 102882949 102883171 -179310493 - L2 LINE L2 -716 2598 2354 1814 223 80 17 chr1 102883185 102883660 -179310004 - MLT1D LTR MaLR 0 505 1 2357 98 7 0 chr1 102883984 102884290 -179309374 - AluSq SINE Alu -5 308 1 441 0 0 0 chr1 102884317 102884366 -179309298 + (CA)n Simple_repeat Simple_repeat 2 50 0 841 189 56 28 chr1 102888340 102888520 -179305144 - MER58A DNA MER1_type 0 224 40 2099 153 32 48 chr1 102888520 102888957 -179304707 + L1MB7 LINE L1 5755 6184 0 191 350 20 20 chr1 102889096 102889196 -179304468 + L2 LINE L2 2991 3090 -182 2070 136 14 0 chr1 102889201 102889496 -179304168 - AluJb SINE Alu -13 299 1 2323 112 0 0 chr1 102889901 102890205 -179303459 + AluSx SINE Alu 1 304 -8 2372 94 0 7 chr1 102890453 102890760 -179302904 + AluSc SINE Alu 1 305 -4 461 184 41 0 chr1 102890760 102890858 -179302806 - MIR SINE MIR -104 158 57 1626 117 140 19 chr1 102891125 102891389 -179302275 + AluJb SINE Alu 1 296 -16 2277 70 3 40 chr1 102892448 102892748 -179300916 + AluSc SINE Alu 1 289 -20 212 270 27 14 chr1 102893479 102893553 -179300111 + GA-rich Low_complexity Low_complexity 1 75 0 2076 151 14 12 chr1 102893555 102893900 -179299764 + MER7A DNA MER2_type 1 344 -2 2245 124 0 3 chr1 102896955 102897262 -179296402 + AluSx SINE Alu 1 306 -6 2850 154 44 41 chr1 102897500 102897638 -179296026 - L1MB8 LINE L1 0 6178 6042 2279 104 3 0 chr1 102897638 102897935 -179295729 - AluSx SINE Alu -14 298 1 2850 154 44 41 chr1 102897935 102898407 -179295257 - L1MB8 LINE L1 -136 6042 5566 284 234 297 0 chr1 102899731 102899859 -179293805 + MIR SINE MIR 86 251 -11 1696 153 7 53 chr1 102900164 102900465 -179293199 - AluJo SINE Alu -25 287 1 187 389 20 35 chr1 102901303 102901506 -179292158 - L2 LINE L2 -86 3186 2987 370 305 49 63 chr1 102901985 102902208 -179291456 + L2 LINE L2 3053 3272 0 807 179 0 0 chr1 102903542 102903676 -179289988 + AluJb SINE Alu 1 134 -178 253 191 0 0 chr1 102903676 102903718 -179289946 + (CA)n Simple_repeat Simple_repeat 2 43 0 297 240 0 0 chr1 102903718 102903793 -179289871 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 1016 165 0 6 chr1 102903802 102903960 -179289704 + AluJb SINE Alu 144 300 -12 2367 84 7 0 chr1 102904235 102904533 -179289131 + AluSq SINE Alu 1 300 -13 347 255 120 38 chr1 102904960 102905144 -179288520 + L1MC4 LINE L1 7843 8041 -1 372 215 136 44 chr1 102905228 102905394 -179288270 + L1ME LINE L1 5529 5662 -459 390 289 143 45 chr1 102905721 102905787 -179287877 + L2 LINE L2 2199 2257 -1057 2198 124 7 0 chr1 102905787 102906093 -179287571 - AluSx SINE Alu -4 308 1 390 289 143 45 chr1 102906093 102906653 -179287011 + L2 LINE L2 2257 2887 -427 946 266 37 13 chr1 102906712 102907074 -179286590 + MLT1J LTR MaLR 75 508 -3 228 345 28 45 chr1 102907297 102907474 -179286190 + L2 LINE L2 3117 3290 -23 303 193 127 80 chr1 102909211 102909361 -179284303 - MIR SINE MIR -74 188 32 627 140 28 9 chr1 102911596 102911703 -179281961 + FLAM_C SINE Alu 17 125 -18 1988 128 27 20 chr1 102911895 102912191 -179281473 - AluSx SINE Alu -9 303 6 1835 156 3 3 chr1 102913509 102913791 -179279873 - AluJb SINE Alu -30 282 1 478 286 42 16 chr1 102913857 102914046 -179279618 + L2 LINE L2 3120 3313 0 624 236 19 0 chr1 102914089 102914246 -179279418 + MIR SINE MIR 28 187 -75 1902 159 0 3 chr1 102914464 102914754 -179278910 + AluJo SINE Alu 4 292 -20 2156 116 0 13 chr1 102916044 102916346 -179277318 - AluSx SINE Alu -14 298 1 2156 114 56 15 chr1 102917187 102917511 -179276153 - MER1B DNA MER1_type 0 337 1 210 71 0 0 chr1 102917643 102917671 -179275993 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 2170 110 0 0 chr1 102918452 102918775 -179274889 + AluSx SINE Alu 1 323 0 266 305 1 11 chr1 102918991 102919079 -179274585 + MIR SINE MIR 8 97 -111 991 139 7 0 chr1 102922537 102922681 -179270983 + AluSg/x SINE Alu 150 294 -16 335 341 111 0 chr1 102923172 102923376 -179270288 + MIR SINE MIR 14 240 -22 2368 49 0 11 chr1 102923701 102923988 -179269676 + AluY SINE Alu 1 284 -27 453 89 0 133 chr1 102924298 102924348 -179269316 - MADE1 DNA Mariner -2 78 44 2163 116 10 3 chr1 102924348 102924650 -179269014 + AluSx SINE Alu 1 304 -8 453 89 0 133 chr1 102924650 102924689 -179268975 - MADE1 DNA Mariner -36 44 1 22 0 0 0 chr1 102924739 102924761 -179268903 + AT_rich Low_complexity Low_complexity 1 22 0 231 204 327 9 chr1 102925066 102925179 -179268485 + MIR SINE MIR 113 261 -1 221 273 34 45 chr1 102925203 102925291 -179268373 + MIR3 SINE MIR 111 197 -11 234 0 0 0 chr1 102925591 102925617 -179268047 + (A)n Simple_repeat Simple_repeat 1 26 0 1901 151 7 16 chr1 102925938 102926243 -179267421 + AluJb SINE Alu 1 302 -10 489 279 87 75 chr1 102926269 102926534 -179267130 - L2 LINE L2 -7 3265 2998 2125 198 85 37 chr1 102926590 102927142 -179266522 + L1ME2 LINE L1 5556 6137 -27 1859 176 0 0 chr1 102927142 102927432 -179266232 + AluJb SINE Alu 2 291 -21 234 227 227 0 chr1 102927510 102927576 -179266088 + MIR SINE MIR 8 88 -174 1098 154 8 124 chr1 102927844 102927972 -179265692 + L1MB8 LINE L1 5435 5518 -666 2149 104 4 0 chr1 102927972 102928251 -179265413 + AluSg SINE Alu 1 280 -30 1098 154 8 124 chr1 102928251 102928388 -179265276 + L1MB8 LINE L1 5518 5669 -515 2528 189 19 17 chr1 102928426 102928955 -179264709 + L1MB8 LINE L1 5649 6178 0 2193 102 7 0 chr1 102928998 102929283 -179264381 + AluSx SINE Alu 10 296 -16 266 254 71 56 chr1 102929710 102929836 -179263828 + MLT1L LTR MaLR 142 269 -346 21 0 0 0 chr1 102930031 102930052 -179263612 + AT_rich Low_complexity Low_complexity 1 21 0 300 196 0 0 chr1 102930948 102930999 -179262665 + L2 LINE L2 3216 3266 -6 2166 121 0 13 chr1 102932365 102932680 -179260984 + AluSx SINE Alu 1 311 -1 207 69 0 0 chr1 102933016 102933045 -179260619 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1624 151 4 31 chr1 102933045 102933304 -179260360 - 7SLRNA srpRNA srpRNA -21 299 48 689 226 26 21 chr1 102935685 102935875 -179257789 - MIR SINE MIR 0 262 72 2002 143 0 17 chr1 102935993 102936294 -179257370 + AluSx SINE Alu 1 296 -16 2102 117 20 3 chr1 102936294 102936593 -179257071 + AluSg SINE Alu 1 305 -5 1181 121 0 0 chr1 102936593 102936759 -179256905 + AluSg/x SINE Alu 139 304 -8 2048 136 0 38 chr1 102936759 102937075 -179256589 + AluSx SINE Alu 1 304 -8 186 103 0 0 chr1 102937166 102937195 -179256469 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 351 241 29 73 chr1 102937796 102937933 -179255731 - L2 LINE L2 -22 3291 3161 183 42 0 0 chr1 102937944 102937968 -179255696 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2109 116 0 3 chr1 102937968 102938252 -179255412 - AluSx SINE Alu -28 284 2 313 333 0 0 chr1 102938603 102938714 -179254950 + L3 LINE CR1 1295 1405 -172 2549 72 3 0 chr1 102938821 102939128 -179254536 + AluY SINE Alu 1 308 -3 2235 93 3 14 chr1 102939247 102939557 -179254107 + AluSp SINE Alu 9 313 0 498 257 145 6 chr1 102939623 102939802 -179253862 - MIR SINE MIR -51 211 8 22 0 0 0 chr1 102939902 102939924 -179253740 + AT_rich Low_complexity Low_complexity 1 22 0 2135 105 14 14 chr1 102940488 102940806 -179252858 - AluSg SINE Alu 0 318 1 1048 162 83 23 chr1 102941460 102941725 -179251939 - Charlie1a DNA MER1_type -1 1454 1174 2441 55 0 32 chr1 102941725 102942033 -179251631 - AluY SINE Alu -13 298 1 1293 165 23 55 chr1 102942074 102942233 -179251431 - Charlie1a DNA MER1_type -1579 1182 1036 1753 194 0 3 chr1 102942233 102942543 -179251121 - AluJo SINE Alu -3 309 1 1293 165 23 55 chr1 102942543 102942692 -179250972 - Charlie1a DNA MER1_type -1725 1036 884 2579 205 55 2 chr1 102942718 102943280 -179250384 + L1MD3 LINE L1 7404 7995 0 2096 114 7 39 chr1 102943291 102943599 -179250065 + AluSx SINE Alu 1 298 -14 2712 184 158 52 chr1 102943599 102943934 -179249730 - Charlie1a DNA MER1_type -1871 890 592 2364 97 0 0 chr1 102943934 102944234 -179249430 - AluSq SINE Alu -13 300 1 2712 184 158 52 chr1 102944234 102944636 -179249028 - Charlie1a DNA MER1_type -2169 592 74 2399 90 0 3 chr1 102944636 102944937 -179248727 + AluSg SINE Alu 1 300 -10 1717 164 26 10 chr1 102944946 102945251 -179248413 + AluJo SINE Alu 1 310 -2 438 235 24 42 chr1 102945296 102945462 -179248202 - L2 LINE L2 -100 3213 3051 199 260 144 0 chr1 102945872 102945976 -179247688 - MIR SINE MIR -27 235 117 180 0 0 0 chr1 102946008 102946028 -179247636 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1413 173 26 97 chr1 102946274 102946655 -179247009 + MLT1A1 LTR MaLR 1 354 -11 350 198 0 33 chr1 102946731 102946822 -179246842 - MIR SINE MIR -56 206 119 404 179 0 12 chr1 102947559 102947643 -179246021 + L1M4 LINE L1 4455 4537 -1609 2527 75 3 0 chr1 102950445 102950753 -179242911 + AluSp SINE Alu 1 309 -4 377 254 215 0 chr1 102951381 102951511 -179242153 + MER5A DNA MER1_type 10 167 -22 22 0 0 0 chr1 102951645 102951667 -179241997 + AT_rich Low_complexity Low_complexity 1 22 0 1165 256 89 11 chr1 102952279 102952883 -179240781 + L2 LINE L2 2646 3313 0 2576 58 7 0 chr1 102952925 102953234 -179240430 + AluY SINE Alu 1 311 0 2068 142 3 3 chr1 102953620 102953923 -179239741 + AluJb SINE Alu 1 303 -9 2057 144 13 0 chr1 102955084 102955383 -179238281 + AluJo SINE Alu 1 303 -9 239 133 22 0 chr1 102955494 102955539 -179238125 + (TG)n Simple_repeat Simple_repeat 2 47 0 1205 89 0 0 chr1 102955686 102955843 -179237821 - AluSq SINE Alu -16 297 141 2037 147 0 10 chr1 102955989 102956296 -179237368 + AluJb SINE Alu 1 304 -8 267 103 0 0 chr1 102956375 102956414 -179237250 + (A)n Simple_repeat Simple_repeat 1 39 0 2048 119 4 89 chr1 102956612 102956846 -179236818 + L1MA8 LINE L1 5736 5908 -383 2009 112 14 4 chr1 102956846 102957124 -179236540 + AluSg SINE Alu 1 281 -29 2048 119 4 89 chr1 102957124 102957311 -179236353 + L1MA8 LINE L1 5908 6109 -182 1113 111 17 0 chr1 102957670 102957851 -179235813 + L1MA8 LINE L1 6096 6279 -12 277 314 29 9 chr1 102957960 102958065 -179235599 + MIR SINE MIR 97 203 -59 212 68 0 91 chr1 102958656 102958700 -179234964 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 2414 57 3 14 chr1 102959182 102959479 -179234185 - AluY SINE Alu -17 294 1 707 216 55 39 chr1 102959994 102960175 -179233489 + MIR SINE MIR 12 195 -67 27 0 0 0 chr1 102960463 102960490 -179233174 + AT_rich Low_complexity Low_complexity 1 27 0 819 188 0 0 chr1 102960770 102960903 -179232761 + FLAM_C SINE Alu 1 133 0 815 280 31 16 chr1 102961070 102961327 -179232337 + MIR SINE MIR 2 262 0 2145 121 16 3 chr1 102961446 102961751 -179231913 + AluSx SINE Alu 1 309 -3 2175 106 3 14 chr1 102961894 102962187 -179231477 + AluSx SINE Alu 9 298 -14 2106 85 57 4 chr1 102962755 102963036 -179230628 + AluSg SINE Alu 1 296 -14 437 241 60 79 chr1 102963171 102963436 -179230228 + MIR SINE MIR 2 261 -1 2024 127 0 0 chr1 102963782 102964065 -179229599 + AluSx SINE Alu 25 307 -5 1690 188 7 0 chr1 102964222 102964504 -179229160 + AluJo SINE Alu 1 284 -28 2484 71 3 0 chr1 102964960 102965255 -179228409 - AluSg SINE Alu -14 296 1 236 229 0 0 chr1 102965794 102965842 -179227822 - L2 LINE L2 -5 3267 3220 21 57 0 0 chr1 102966058 102966093 -179227571 + AT_rich Low_complexity Low_complexity 1 35 0 423 246 149 26 chr1 102966442 102966637 -179227027 + MIR SINE MIR 44 262 0 2286 122 0 0 chr1 102968022 102968334 -179225330 + AluSx SINE Alu 1 312 0 505 32 0 0 chr1 102968344 102968407 -179225257 + MER41B LTR ERV1 485 547 -88 859 56 0 92 chr1 102968421 102968563 -179225101 + L1PA6 LINE L1 6023 6151 -3 2610 56 0 0 chr1 102968730 102969034 -179224630 + AluY SINE Alu 1 304 -7 459 216 81 9 chr1 102969537 102969648 -179224016 - L2 LINE L2 -8 3305 3187 182 278 21 62 chr1 102969728 102969825 -179223839 - L2 LINE L2 -71 3242 3150 331 321 62 6 chr1 102969973 102970135 -179223529 - L2 LINE L2 -569 2745 2575 314 233 29 48 chr1 102970136 102970239 -179223425 + MIR SINE MIR 117 217 -45 267 227 171 11 chr1 102970857 102970945 -179222719 + MIR SINE MIR 50 151 -111 2125 141 3 0 chr1 102971012 102971316 -179222348 - AluSx SINE Alu -7 305 1 385 188 0 0 chr1 102971886 102971950 -179221714 + AluJb SINE Alu 87 150 -152 270 335 73 26 chr1 102972082 102972273 -179221391 + L2 LINE L2 2871 3070 -202 2169 129 3 0 chr1 102972481 102972784 -179220880 + AluSx SINE Alu 1 304 -8 341 320 0 0 chr1 102973470 102973573 -179220091 - MIR3 SINE MIR -48 160 58 424 276 32 54 chr1 102973724 102973813 -179219851 - MIR SINE MIR -70 192 103 1510 146 16 96 chr1 102973813 102973952 -179219712 + AluJo SINE Alu 1 101 -211 189 0 0 0 chr1 102973952 102973973 -179219691 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1510 146 16 96 chr1 102973973 102974155 -179219509 + AluJo SINE Alu 101 296 -16 424 276 32 54 chr1 102974155 102974250 -179219414 - MIR SINE MIR -159 103 12 1306 259 69 2 chr1 102974457 102974850 -179218814 - L2 LINE L2 0 3313 2895 718 284 91 12 chr1 102974853 102975096 -179218568 + MIR SINE MIR 1 262 0 1400 195 3 28 chr1 102976082 102976369 -179217295 - AluJo SINE Alu -32 280 1 1807 115 9 56 chr1 102976378 102976700 -179216964 - AluSq SINE Alu -6 307 1 2069 119 0 10 chr1 102976764 102977067 -179216597 + AluSx SINE Alu 1 300 -12 1189 267 97 40 chr1 102977082 102977627 -179216037 - L2 LINE L2 -2 3311 2740 2018 79 15 0 chr1 102977627 102977892 -179215772 - AluSg SINE Alu -41 269 1 1189 267 97 40 chr1 102977892 102977997 -179215667 - L2 LINE L2 -573 2740 2642 233 235 20 0 chr1 102978599 102978650 -179215014 + GA-rich Low_complexity Low_complexity 1 52 0 2090 105 0 60 chr1 102978705 102979037 -179214627 + AluSx SINE Alu 1 312 0 1070 113 7 0 chr1 102980447 102980598 -179213066 - AluJb SINE Alu -32 280 129 2042 121 0 0 chr1 102982089 102982379 -179211285 + AluSx SINE Alu 4 293 -19 21 71 0 0 chr1 102983376 102983418 -179210246 + AT_rich Low_complexity Low_complexity 1 42 0 2363 62 7 0 chr1 102983418 102983723 -179209941 + AluY SINE Alu 1 307 -4 806 165 23 0 chr1 102983831 102983964 -179209700 + AluJo SINE Alu 1 136 -176 213 196 54 11 chr1 102983964 102984056 -179209608 + (TA)n Simple_repeat Simple_repeat 1 96 0 2003 109 0 0 chr1 102984857 102985172 -179208492 + AluY SINE Alu 1 315 0 618 217 8 25 chr1 102985399 102985540 -179208124 - FLAM_A SINE Alu 0 139 1 396 290 76 31 chr1 102985875 102986043 -179207621 + MIR SINE MIR 51 220 -42 783 148 0 0 chr1 102986046 102986168 -179207496 - AluSg/x SINE Alu -15 297 176 742 160 8 13 chr1 102986169 102986313 -179207351 - MLT1B LTR MaLR -235 139 7 1877 187 37 46 chr1 102986324 102986661 -179207003 - MLT1B-int LTR MaLR -3 1368 1034 2072 116 0 7 chr1 102986661 102986962 -179206702 + AluSq SINE Alu 1 299 -14 1877 187 37 46 chr1 102986962 102987057 -179206607 - MLT1B-int LTR MaLR -337 1034 940 343 248 20 20 chr1 102987083 102987184 -179206480 - MLT1B-int LTR MaLR -959 776 676 648 247 34 0 chr1 102987239 102987385 -179206279 - MLT1-int LTR MaLR -487 884 734 2739 199 29 14 chr1 102987489 102988121 -179205543 - L1MA9 LINE L1 -180 6132 5492 462 179 80 0 chr1 102988117 102988229 -179205435 - L1MB2 LINE L1 -276 5895 5775 * 367 221 77 0 chr1 102988243 102988347 -179205317 - L1PB4 LINE L1 0 6156 6045 * 558 183 0 0 chr1 102988345 102988449 -179205215 - L1MA9 LINE L1 -801 5490 5387 * 2894 256 75 15 chr1 102988434 102989039 -179204625 - L1MB2 LINE L1 -42 6129 5562 1915 141 0 3 chr1 102989039 102989330 -179204334 - AluSx SINE Alu -22 290 1 2894 256 75 15 chr1 102989330 102990074 -179203590 - L1MB2 LINE L1 -609 5562 4693 453 225 108 39 chr1 102990092 102990221 -179203443 - FLAM_C SINE Alu -1 142 5 389 190 98 92 chr1 102990227 102990368 -179203296 - L1MB2 LINE L1 -1443 4703 4559 2453 56 0 7 chr1 102990368 102990672 -179202992 - AluY SINE Alu -9 302 1 389 190 98 92 chr1 102990672 102990714 -179202950 - L1MB2 LINE L1 -1587 4559 4519 692 245 112 13 chr1 102990735 102991049 -179202615 - L1MB2 LINE L1 -3324 2822 2478 233 216 0 14 chr1 102991068 102991142 -179202522 + (TA)n Simple_repeat Simple_repeat 1 73 0 184 246 82 0 chr1 102993063 102993124 -179200540 + L2 LINE L2 2725 2790 -524 587 274 80 19 chr1 102994259 102994471 -179199193 - MER58B DNA MER1_type -23 318 94 25 51 0 0 chr1 102995318 102995357 -179198307 + AT_rich Low_complexity Low_complexity 1 39 0 800 112 0 26 chr1 102995428 102995544 -179198120 + FLAM_C SINE Alu 15 127 -16 24 0 0 0 chr1 102995548 102995572 -179198092 + AT_rich Low_complexity Low_complexity 1 24 0 2040 130 3 0 chr1 102995641 102995941 -179197723 + AluSx SINE Alu 1 301 -11 1641 165 216 3 chr1 102996988 102997339 -179196325 + MSTC LTR MaLR 1 426 -2 643 104 73 0 chr1 102997586 102997682 -179195982 - AluSq SINE Alu -14 299 197 497 178 0 11 chr1 102997801 102997891 -179195773 - FLAM_A SINE Alu -13 129 41 1544 100 0 5 chr1 102997899 102998109 -179195555 - AluSq SINE Alu -104 209 1 207 69 0 0 chr1 102998399 102998428 -179195236 + (TG)n Simple_repeat Simple_repeat 2 30 0 323 196 0 0 chr1 102998752 102998803 -179194861 + L2 LINE L2 3216 3266 -6 1941 133 0 17 chr1 103000191 103000492 -179193172 + AluSx SINE Alu 1 296 -16 1975 115 20 3 chr1 103000492 103000787 -179192877 + AluSg SINE Alu 1 301 -9 963 123 13 0 chr1 103000787 103000942 -179192722 + AluSg/x SINE Alu 137 293 -17 1980 118 3 3 chr1 103001119 103001408 -179192256 - AluSg SINE Alu -21 289 1 23 0 0 0 chr1 103001505 103001528 -179192136 + AT_rich Low_complexity Low_complexity 1 23 0 2199 89 3 3 chr1 103001843 103002136 -179191528 - AluSp SINE Alu -20 293 1 1893 145 0 3 chr1 103002222 103002526 -179191138 - AluSg SINE Alu -7 303 1 180 0 0 0 chr1 103002527 103002547 -179191117 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr1 103002646 103002666 -179190998 + (TA)n Simple_repeat Simple_repeat 2 21 0 5519 62 4 4 chr1 103003562 103004244 -179189420 + HERVH48 LTR ERV1 5973 6654 0 2081 111 32 129 chr1 103004244 103004685 -179188979 + MER48 LTR ERV1 1 398 0 470 301 137 0 chr1 103004729 103004912 -179188752 + MIR SINE MIR 20 227 -35 1765 162 7 3 chr1 103006438 103006740 -179186924 - AluJb SINE Alu -7 305 3 701 208 64 102 chr1 103006769 103007034 -179186630 + LTR38B LTR ERV1 10 264 -346 1879 140 0 3 chr1 103007146 103007484 -179186180 + AluSx SINE Alu 1 337 0 264 180 0 0 chr1 103007525 103007575 -179186089 - LTR38B LTR ERV1 -552 58 9 442 246 130 0 chr1 103007599 103007737 -179185927 + LTR38B LTR ERV1 302 457 -153 2472 49 0 3 chr1 103007903 103008208 -179185456 - AluY SINE Alu -7 304 1 331 296 26 26 chr1 103009554 103009669 -179183995 - L1MC4 LINE L1 -1340 6702 6588 310 186 49 59 chr1 103009688 103009790 -179183874 - L1MC4 LINE L1 -1339 6703 6603 990 198 72 25 chr1 103010251 103010485 -179183179 + MER52A LTR ERV1 180 488 -1267 317 58 0 3 chr1 103010485 103010529 -179183135 - L1PA10 LINE L1 -104 6064 6023 1545 196 54 14 chr1 103011287 103011620 -179182044 + L1MA9 LINE L1 5744 6093 -219 1064 250 24 43 chr1 103011620 103011992 -179181672 - MLT1A1 LTR MaLR 0 365 1 1545 196 54 14 chr1 103011992 103012010 -179181654 + L1MA9 LINE L1 6093 6109 -203 25 65 0 0 chr1 103012071 103012117 -179181547 + AT_rich Low_complexity Low_complexity 1 46 0 344 276 85 70 chr1 103012347 103012546 -179181118 + L1ME3A LINE L1 4981 5182 -964 29 43 0 43 chr1 103012684 103012753 -179180911 + AT_rich Low_complexity Low_complexity 1 66 0 946 272 86 47 chr1 103012814 103013037 -179180627 + L1ME3A LINE L1 5258 5471 -699 2517 40 0 0 chr1 103013037 103013335 -179180329 + AluY SINE Alu 1 298 -13 946 272 86 47 chr1 103013335 103013857 -179179807 + L1ME3A LINE L1 5471 6032 -138 235 261 17 17 chr1 103014127 103014246 -179179418 + A-rich Low_complexity Low_complexity 1 119 0 1986 103 52 3 chr1 103015124 103015415 -179178249 + AluSg SINE Alu 1 305 -5 7718 137 20 19 chr1 103015417 103016884 -179176780 + L1P3 LINE L1 65 1574 -4734 2107 183 71 23 chr1 103016904 103017342 -179176322 + LTR2B LTR ERV1 32 490 0 1916 195 0 73 chr1 103017346 103017863 -179175801 + L1P3 LINE L1 1567 2045 -4416 210 163 151 47 chr1 103020061 103020147 -179173517 + MIR SINE MIR 112 206 -56 9497 194 45 30 chr1 103020283 103022145 -179171519 + L1P LINE L1 3259 5165 -1296 2332 71 0 0 chr1 103022145 103022442 -179171222 - AluY SINE Alu -14 297 1 9497 194 45 30 chr1 103022442 103022942 -179170722 + L1P LINE L1 5165 5656 -805 1106 199 0 0 chr1 103023719 103023900 -179169764 - LTR39 LTR ERV1 -2 781 601 561 155 58 0 chr1 103023901 103024004 -179169660 + HY1 scRNA scRNA 1 109 -3 267 189 0 0 chr1 103024007 103024060 -179169604 + A-rich Low_complexity Low_complexity 1 53 0 2041 138 28 6 chr1 103024060 103024385 -179169279 - LTR39 LTR ERV1 -172 611 280 1225 231 53 31 chr1 103024396 103024756 -179168908 + MER74B LTR ERVL 181 548 -74 616 174 73 0 chr1 103025528 103025637 -179168027 + FLAM_C SINE Alu 2 118 -25 185 300 25 38 chr1 103025734 103025814 -179167850 - MIR3 SINE MIR -48 160 82 1578 155 19 70 chr1 103026123 103026439 -179167225 - AluJo SINE Alu -12 300 1 5361 36 0 0 chr1 103027358 103027976 -179165688 + L1PA5 LINE L1 5530 6147 -7 27 49 0 0 chr1 103028838 103028879 -179164785 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr1 103028938 103028963 -179164701 + AT_rich Low_complexity Low_complexity 1 25 0 1825 189 0 3 chr1 103029253 103029554 -179164110 - AluJo SINE Alu -7 305 6 22 0 0 0 chr1 103029893 103029915 -179163749 + AT_rich Low_complexity Low_complexity 1 22 0 2176 93 6 6 chr1 103030645 103030957 -179162707 - AluSp SINE Alu -1 312 1 1204 184 70 121 chr1 103031058 103031488 -179162176 - L1MA9 LINE L1 -10 6302 5895 315 250 158 88 chr1 103031488 103031682 -179161982 + L1MC4a LINE L1 6680 6894 -914 2107 132 0 28 chr1 103031682 103032001 -179161663 - AluSx SINE Alu -2 310 1 315 250 158 88 chr1 103032001 103032034 -179161630 + L1MC4a LINE L1 6894 6923 -885 607 213 41 0 chr1 103032052 103032174 -179161490 + FLAM_A SINE Alu 1 127 -6 2294 251 39 57 chr1 103032459 103033332 -179160332 + L1M3b LINE L1 853 1709 -4572 451 247 0 0 chr1 103033333 103033430 -179160234 + AluJ/FLAM SINE Alu 2 98 -214 99 66 0 0 chr1 103033433 103033616 -179160048 + AT_rich Low_complexity Low_complexity 1 183 0 1471 195 8 0 chr1 103033645 103033907 -179159757 + AluJo SINE Alu 34 297 -15 276 341 28 14 chr1 103033909 103034123 -179159541 + L1M4c LINE L1 1322 1538 -4846 1157 85 12 0 chr1 103034130 103034295 -179159369 - L1MA2 LINE L1 0 6304 6138 304 120 0 40 chr1 103034399 103034449 -179159215 - THE1C LTR MaLR -326 49 2 382 283 120 22 chr1 103035100 103035284 -179158380 + MIR SINE MIR 1 202 -60 2475 68 0 3 chr1 103035437 103035733 -179157931 - AluY SINE Alu -16 295 1 5142 166 40 2 chr1 103035733 103036675 -179156989 - L1 LINE L1 -1810 4336 3359 227 304 182 34 chr1 103037049 103037197 -179156467 - MER5A DNA MER1_type -8 181 12 447 234 33 102 chr1 103037363 103037607 -179156057 + L1MC4 LINE L1 7281 7507 -535 2259 117 7 0 chr1 103037608 103037908 -179155756 - AluSx SINE Alu -10 302 1 206 342 70 32 chr1 103038925 103039083 -179154581 + MER5B DNA MER1_type 13 176 -2 2258 92 7 3 chr1 103039329 103039634 -179154030 + AluSp SINE Alu 1 306 -7 3524 116 9 15 chr1 103039860 103040393 -179153271 - MER4B LTR ERV1 -80 530 1 1106 149 12 0 chr1 103040393 103040561 -179153103 - MER4B-int LTR ERV1 -88 4103 3934 2517 63 3 0 chr1 103040577 103040880 -179152784 - AluY SINE Alu -7 304 1 766 168 14 28 chr1 103040882 103041025 -179152639 - AluSq/x SINE Alu -170 142 2 1269 152 22 35 chr1 103041026 103041257 -179152407 - MER4B-int LTR ERV1 -302 3889 3662 1746 73 14 0 chr1 103041258 103041477 -179152187 - AluSg/x SINE Alu -12 300 79 2402 83 0 0 chr1 103041479 103041781 -179151883 - AluY SINE Alu -9 302 1 548 134 0 0 chr1 103041781 103041863 -179151801 - AluSc SINE Alu -225 84 3 1830 171 10 0 chr1 103042171 103042476 -179151188 - AluJo SINE Alu -4 308 1 23 54 0 0 chr1 103042549 103042586 -179151078 + AT_rich Low_complexity Low_complexity 1 37 0 1663 197 3 16 chr1 103042861 103043170 -179150494 - AluSx SINE Alu -7 305 1 207 0 0 0 chr1 103043180 103043203 -179150461 + (T)n Simple_repeat Simple_repeat 1 23 0 431 261 104 22 chr1 103043603 103043871 -179149793 + L1MC4 LINE L1 7753 8042 0 224 247 104 0 chr1 103043980 103044057 -179149607 - MER5A DNA MER1_type -84 105 21 609 285 83 21 chr1 103044322 103044459 -179149205 - L1M4 LINE L1 -1735 4411 4284 2319 85 0 0 chr1 103044459 103044791 -179148873 - AluY SINE Alu 0 332 1 609 285 83 21 chr1 103044791 103045024 -179148640 - L1M4 LINE L1 -1862 4284 4017 1225 209 4 17 chr1 103045036 103045275 -179148389 - AluJo SINE Alu -76 236 1 387 294 97 25 chr1 103045426 103045705 -179147959 - L1M4 LINE L1 -2310 3836 3538 28 29 0 0 chr1 103046319 103046354 -179147310 + AT_rich Low_complexity Low_complexity 1 35 0 3239 77 42 0 chr1 103046455 103046999 -179146665 - L1PA8A LINE L1 -648 5483 4922 3337 140 17 0 chr1 103047000 103047529 -179146135 - MSTA-int LTR MaLR -1113 538 1 2797 137 14 5 chr1 103047529 103047953 -179145711 - MSTA LTR MaLR 0 428 1 3997 166 30 78 chr1 103047959 103048797 -179144867 - L1M1 LINE L1 -6386 1179 382 339 65 0 0 chr1 103049001 103049047 -179144617 + (T)n Simple_repeat Simple_repeat 1 46 0 1025 246 7 14 chr1 103049124 103049408 -179144256 + L1 LINE L1 4793 5074 -1072 3657 116 58 1 chr1 103051665 103052394 -179141270 + L1P5 LINE L1 5042 5805 -346 11666 162 38 8 chr1 103052498 103055065 -179138599 + L1P LINE L1 1981 4668 -1478 2095 145 3 0 chr1 103055065 103055361 -179138303 + AluSx SINE Alu 1 297 -15 11666 162 38 8 chr1 103055361 103055760 -179137904 + L1P LINE L1 4668 5054 -1092 981 130 0 0 chr1 103055762 103055893 -179137771 + AluSg SINE Alu 1 131 -179 558 260 98 17 chr1 103055896 103055913 -179137751 + L1MCa LINE L1 75 89 -6337 6495 67 14 27 chr1 103055913 103057012 -179136652 + L1PA8A LINE L1 5042 6131 0 558 260 98 17 chr1 103057012 103057229 -179136435 + L1MCa LINE L1 89 328 -6098 329 154 0 0 chr1 103057234 103057286 -179136378 + MER4A LTR ERV1 47 98 -566 * 1783 128 160 75 chr1 103057282 103057658 -179136006 + MER4A LTR ERV1 257 664 0 2573 219 36 0 chr1 103057658 103058233 -179135431 - L1P LINE L1 -3739 2407 1812 1951 176 58 56 chr1 103058442 103058629 -179135035 + MSTB1 LTR MaLR 5 190 -242 2160 121 0 0 chr1 103058629 103058934 -179134730 + AluSx SINE Alu 1 305 0 1951 176 58 56 chr1 103058934 103059172 -179134492 + MSTB1 LTR MaLR 190 432 0 2079 138 3 0 chr1 103059293 103059590 -179134074 - AluSp SINE Alu -15 298 1 781 247 108 56 chr1 103059795 103060204 -179133460 + MSTB1 LTR MaLR 1 430 -2 2413 101 0 0 chr1 103060638 103060945 -179132719 - AluSc SINE Alu -2 307 1 378 259 17 17 chr1 103061101 103061217 -179132447 + MER68 LTR ERV1 1 116 -446 2833 99 65 5 chr1 103061350 103061793 -179131871 + L1PB2 LINE L1 5677 6146 -5 35 24 0 0 chr1 103061794 103061836 -179131828 + AT_rich Low_complexity Low_complexity 1 42 0 1978 174 75 36 chr1 103063329 103063771 -179129893 - LTR2B LTR ERV1 0 490 32 393 87 261 0 chr1 103064006 103064075 -179129589 + FLAM_C SINE Alu 25 111 -22 524 218 67 42 chr1 103064109 103064274 -179129390 + MER93a LTR ERV1 234 402 0 21 36 0 0 chr1 103064390 103064418 -179129246 + GC_rich Low_complexity Low_complexity 1 28 0 1055 92 8 0 chr1 103065227 103065358 -179128306 - AluSg SINE Alu -176 134 3 278 153 0 34 chr1 103065514 103065573 -179128091 + L1MB8 LINE L1 6122 6178 0 * 2853 168 45 102 chr1 103065565 103065661 -179128003 + L1MB7 LINE L1 5425 5525 -659 1606 105 52 8 chr1 103065661 103065909 -179127755 + AluSg SINE Alu 52 310 0 2853 168 45 102 chr1 103065909 103066239 -179127425 + L1MB7 LINE L1 5525 5872 -312 1826 114 20 37 chr1 103066239 103066536 -179127128 + AluJb SINE Alu 1 292 -20 2853 168 45 102 chr1 103066536 103066841 -179126823 + L1MB7 LINE L1 5872 6111 -73 2245 103 3 0 chr1 103066841 103067133 -179126531 + AluSg SINE Alu 1 293 -17 2853 168 45 102 chr1 103067133 103067195 -179126469 + L1MB7 LINE L1 6111 6175 -9 1600 23 0 0 chr1 103067214 103067385 -179126279 + AluY SINE Alu 1 171 -140 388 182 15 0 chr1 103067385 103067451 -179126213 - MLT1H LTR MaLR -474 75 9 209 281 42 21 chr1 103067496 103067592 -179126072 - MIR SINE MIR -102 106 9 2560 59 3 0 chr1 103067847 103068153 -179125511 + AluY SINE Alu 1 307 -4 818 141 0 16 chr1 103068547 103068675 -179124989 - FLAM_C SINE Alu -17 126 1 231 269 111 9 chr1 103068697 103068805 -179124859 + L1ME4a LINE L1 5969 6087 -34 22 56 0 0 chr1 103069599 103069635 -179124029 + AT_rich Low_complexity Low_complexity 1 36 0 183 80 0 0 chr1 103069648 103069673 -179123991 + (A)n Simple_repeat Simple_repeat 1 25 0 14270 111 28 11 chr1 103070527 103073485 -179120179 - HERVH48 LTR ERV1 -3585 3069 1 1100 123 0 0 chr1 103073488 103073642 -179120022 - MER48 LTR ERV1 -3 384 231 2220 229 50 0 chr1 103073800 103074324 -179119340 - L1 LINE L1 -3240 2906 2357 2188 158 87 5 chr1 103075182 103075575 -179118089 + MSTB LTR MaLR 2 426 0 1315 216 35 23 chr1 103075782 103076125 -179117539 - L1MA7 LINE L1 -10 6281 5935 2073 65 3 45 chr1 103076225 103076515 -179117149 + L1PA8A LINE L1 5850 6127 -4 * 6207 178 32 3 chr1 103076502 103077567 -179116097 + MST-int LTR MaLR 524 1619 -32 3398 213 22 6 chr1 103077579 103078249 -179115415 + L1M1 LINE L1 1181 1861 -5704 2521 121 58 18 chr1 103078349 103078948 -179114716 - L1P5 LINE L1 -498 5653 5042 1036 264 64 52 chr1 103079264 103079688 -179113976 - L1 LINE L1 -1993 4153 3725 424 257 22 7 chr1 103079790 103079926 -179113738 - L1 LINE L1 -2644 3502 3365 230 93 0 23 chr1 103080007 103080050 -179113614 - L1PA15 LINE L1 -4 6161 6120 * 590 65 0 0 chr1 103080048 103080125 -179113539 + L1P4 LINE L1 5715 5791 -374 2023 139 20 20 chr1 103080126 103080349 -179113315 - L1P4 LINE L1 -446 5719 5497 180 0 0 0 chr1 103080349 103080369 -179113295 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1764 183 0 3 chr1 103080372 103080667 -179112997 - AluJb SINE Alu -16 296 3 2023 139 20 20 chr1 103080667 103080784 -179112880 - L1P4 LINE L1 -669 5496 5375 228 321 26 21 chr1 103080943 103081133 -179112531 + L1MEd LINE L1 1020 1210 -4909 1631 141 17 60 chr1 103081139 103081438 -179112226 + AluJo SINE Alu 4 289 -23 1951 98 19 35 chr1 103081555 103081871 -179111793 + AluY SINE Alu 1 311 0 186 336 52 9 chr1 103084051 103084167 -179109497 + MIR SINE MIR 112 232 -30 3728 28 0 0 chr1 103084496 103084925 -179108739 + L1P LINE L1 4075 4503 -1643 508 131 172 14 chr1 103085076 103085221 -179108443 + MER4A LTR ERV1 495 662 -2 255 61 0 0 chr1 103085254 103085287 -179108377 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 394 143 0 54 chr1 103085280 103085427 -179108237 + (TA)n Simple_repeat Simple_repeat 1 139 0 252 0 0 0 chr1 103085427 103085455 -179108209 + (GA)n Simple_repeat Simple_repeat 2 29 0 1094 195 137 17 chr1 103085489 103085909 -179107755 + MER21A LTR ERV1 1 499 -364 208 156 0 0 chr1 103085909 103085941 -179107723 + A-rich Low_complexity Low_complexity 1 32 0 466 188 230 24 chr1 103085957 103086122 -179107542 + MLT1C LTR MaLR 269 467 0 526 306 71 20 chr1 103086125 103086380 -179107284 - L2 LINE L2 -838 2476 2209 1313 130 126 72 chr1 103086403 103086535 -179107129 - AluJo SINE Alu -18 294 171 2235 94 16 10 chr1 103086535 103086842 -179106822 - AluSg1 SINE Alu 0 309 1 1313 130 126 72 chr1 103086842 103086986 -179106678 - AluJo SINE Alu -141 171 3 814 160 0 8 chr1 103087000 103087125 -179106539 - FLAM_C SINE Alu -9 124 1 2054 132 3 0 chr1 103087468 103087755 -179105909 - AluSx SINE Alu -20 292 5 199 320 120 16 chr1 103088521 103088646 -179105018 + L2 LINE L2 3134 3271 -1 947 151 0 0 chr1 103089808 103089954 -179103710 - AluSg/x SINE Alu -13 299 154 2376 82 7 0 chr1 103090065 103090356 -179103308 - AluSc SINE Alu -16 293 1 815 129 32 0 chr1 103090472 103090596 -179103068 - AluJb SINE Alu -15 297 170 877 134 0 0 chr1 103090596 103090715 -179102949 + FAM SINE Alu 22 140 -45 1071 264 7 20 chr1 103090717 103091012 -179102652 + AluJb SINE Alu 2 292 -10 319 256 29 73 chr1 103091185 103091322 -179102342 - L2 LINE L2 -22 3291 3161 183 42 0 0 chr1 103091333 103091357 -179102307 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2109 116 0 3 chr1 103091357 103091641 -179102023 - AluSx SINE Alu -28 284 2 313 333 0 0 chr1 103091992 103092103 -179101561 + L3 LINE CR1 1295 1405 -172 2557 69 3 0 chr1 103092210 103092516 -179101148 + AluY SINE Alu 1 307 -4 2406 68 0 7 chr1 103092636 103092930 -179100734 + AluSp SINE Alu 9 300 -13 2282 110 0 0 chr1 103092943 103093244 -179100420 + AluSq SINE Alu 9 309 -4 3868 161 43 14 chr1 103093245 103093940 -179099724 - MER21A-int LTR ERV1 -636 3555 2841 * 5088 188 87 41 chr1 103093937 103094160 -179099504 - MER21A-int LTR ERV1 -1802 2389 2178 1964 123 13 3 chr1 103094160 103094462 -179099202 + AluY SINE Alu 1 305 -6 5088 188 87 41 chr1 103094462 103094476 -179099188 - MER21A-int LTR ERV1 -2013 2178 2166 847 133 16 0 chr1 103094476 103094604 -179099060 + FLAM_C SINE Alu 1 130 -3 5088 188 87 41 chr1 103094604 103094750 -179098914 - MER21A-int LTR ERV1 -2025 2166 2028 2232 93 17 0 chr1 103094750 103095041 -179098623 - AluSq SINE Alu -17 296 1 5088 188 87 41 chr1 103095041 103095297 -179098367 - MER21A-int LTR ERV1 -2163 2028 1785 1785 164 25 0 chr1 103095297 103095583 -179098081 + AluSx SINE Alu 2 294 -18 5088 188 87 41 chr1 103095583 103096061 -179097603 - MER21A-int LTR ERV1 -2406 1785 1218 258 32 0 0 chr1 103096061 103096092 -179097572 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 1251 178 4 9 chr1 103096107 103096332 -179097332 - AluJo SINE Alu -2 310 87 4757 156 66 17 chr1 103096348 103096411 -179097253 - MER21A-int LTR ERV1 -2532 4226 4168 2266 105 3 3 chr1 103096411 103096707 -179096957 + AluSx SINE Alu 1 296 -16 4757 156 66 17 chr1 103096707 103097125 -179096539 - MER21A-int LTR ERV1 -2590 4168 3772 2785 23 3 0 chr1 103097125 103097434 -179096230 - AluY SINE Alu -1 310 1 4757 156 66 17 chr1 103097434 103097851 -179095813 - MER21A-int LTR ERV1 -2986 3772 3283 1370 128 5 0 chr1 103097843 103098039 -179095625 - MER21A-int LTR ERV1 -3994 197 1 * 2819 129 65 40 chr1 103098039 103098543 -179095121 - MER21A LTR ERV1 0 931 415 390 234 58 44 chr1 103098544 103098681 -179094983 - MLT1C LTR MaLR -219 248 110 1669 176 0 14 chr1 103098683 103098972 -179094692 - AluSg SINE Alu -7 303 19 550 80 13 0 chr1 103099020 103099095 -179094569 - AluSg SINE Alu -177 133 58 235 257 40 0 chr1 103099272 103099346 -179094318 + MIR SINE MIR 65 141 -67 655 153 33 0 chr1 103099403 103099553 -179094111 + CT-rich Low_complexity Low_complexity 3 157 0 2051 122 17 0 chr1 103101282 103101570 -179092094 - AluSx SINE Alu -19 293 1 268 171 50 31 chr1 103101775 103101859 -179091805 - MER4D LTR ERV1 -635 87 1 29 60 0 0 chr1 103101879 103101929 -179091735 + AT_rich Low_complexity Low_complexity 1 50 0 479 128 39 0 chr1 103101938 103102016 -179091648 + AluJ/FLAM SINE Alu 2 82 -230 251 279 0 0 chr1 103102021 103102089 -179091575 + L2 LINE L2 1332 1399 -1915 745 266 150 39 chr1 103102195 103102624 -179091040 + L2 LINE L2 1682 2168 -1146 2256 84 0 7 chr1 103102624 103102908 -179090756 - AluSc SINE Alu -27 282 1 745 266 150 39 chr1 103102908 103102944 -179090720 + L2 LINE L2 2168 2199 -1115 2419 155 31 3 chr1 103102944 103103325 -179090339 + MSTA LTR MaLR 3 394 -34 773 173 8 8 chr1 103103325 103103458 -179090206 - FLAM_C SINE Alu -9 134 2 844 286 129 14 chr1 103103480 103103900 -179089764 + L2 LINE L2 2194 2661 -653 379 318 9 0 chr1 103104007 103104114 -179089550 + L2 LINE L2 3145 3252 -20 22 56 0 0 chr1 103104785 103104821 -179088843 + AT_rich Low_complexity Low_complexity 1 36 0 231 269 111 9 chr1 103105614 103105722 -179087942 - L1ME4a LINE L1 -34 6087 5969 822 109 0 90 chr1 103105744 103105900 -179087764 + FLAM_C SINE Alu 1 142 -1 2477 62 3 7 chr1 103106267 103106575 -179087089 - AluY SINE Alu -4 307 1 238 140 20 40 chr1 103106612 103106662 -179087002 + Alu SINE Alu 116 164 -139 971 121 66 0 chr1 103106909 103107075 -179086589 + L1MA7 LINE L1 6063 6239 -52 1555 171 62 7 chr1 103107075 103107349 -179086315 + AluJb SINE Alu 1 289 -23 947 179 30 0 chr1 103107646 103107814 -179085850 + FAM SINE Alu 1 173 -2 2177 122 3 0 chr1 103107957 103108252 -179085412 - AluSx SINE Alu -16 296 1 632 242 0 0 chr1 103108736 103108856 -179084808 - FLAM_A SINE Alu -14 128 9 814 158 1 45 chr1 103108867 103109031 -179084633 - L1ME4a LINE L1 -550 5621 5469 1570 158 8 12 chr1 103109485 103109744 -179083920 + AluJo SINE Alu 14 271 -41 22 35 0 0 chr1 103109857 103109886 -179083778 + AT_rich Low_complexity Low_complexity 1 29 0 1848 146 17 23 chr1 103110094 103110111 -179083553 - AluJo SINE Alu -13 299 283 252 0 0 0 chr1 103110111 103110139 -179083525 + (TG)n Simple_repeat Simple_repeat 1 28 0 1848 146 17 23 chr1 103110139 103110422 -179083242 - AluJo SINE Alu -29 283 1 210 118 0 0 chr1 103110430 103110464 -179083200 + (T)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 103110865 103110886 -179082778 + AT_rich Low_complexity Low_complexity 1 21 0 2072 126 6 28 chr1 103110889 103111206 -179082458 + AluSx SINE Alu 1 310 -2 1169 180 54 18 chr1 103111302 103111524 -179082140 + AluJo SINE Alu 1 230 -82 2031 105 7 34 chr1 103111731 103112027 -179081637 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr1 103112128 103112150 -179081514 + (T)n Simple_repeat Simple_repeat 1 22 0 2096 114 31 14 chr1 103112248 103112403 -179081261 - AluSg SINE Alu -15 295 131 2342 99 0 3 chr1 103112403 103112705 -179080959 - AluSq SINE Alu -12 301 1 2096 114 31 14 chr1 103112705 103112839 -179080825 - AluSg SINE Alu -179 131 1 300 223 100 15 chr1 103112839 103112969 -179080695 + MIR SINE MIR 122 262 0 1668 98 136 8 chr1 103113270 103113535 -179080129 - AluSg SINE Alu -1 299 1 299 233 0 0 chr1 103113594 103113654 -179080010 - MLT1K LTR MaLR -8 580 521 283 276 32 144 chr1 103113680 103113864 -179079800 - MLT1K LTR MaLR -179 409 259 2127 71 35 21 chr1 103113864 103113984 -179079680 + AluSc SINE Alu 1 118 -191 180 0 0 0 chr1 103113984 103114004 -179079660 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2127 71 35 21 chr1 103114004 103114165 -179079499 + AluSc SINE Alu 118 286 -23 283 276 32 144 chr1 103114165 103114230 -179079434 - MLT1K LTR MaLR -329 259 188 1555 91 21 12 chr1 103114950 103115192 -179078472 + L1MA2 LINE L1 6061 6304 0 2342 104 3 0 chr1 103115251 103115549 -179078115 + AluSx SINE Alu 1 299 -13 2213 96 10 3 chr1 103115639 103115930 -179077734 + AluSp SINE Alu 2 294 -19 2111 146 0 0 chr1 103116289 103116597 -179077067 + AluSx SINE Alu 1 308 -4 27 62 0 0 chr1 103116751 103116799 -179076865 + AT_rich Low_complexity Low_complexity 1 48 0 2114 99 3 7 chr1 103117057 103117340 -179076324 - AluSp SINE Alu -4 309 28 809 175 0 21 chr1 103117440 103117583 -179076081 - AluJo SINE Alu -162 150 11 606 183 14 78 chr1 103117599 103117741 -179075923 - MER21B LTR ERV1 -635 228 96 492 264 10 16 chr1 103117711 103117870 -179075794 - MER21B LTR ERV1 -407 198 1 * 1656 131 97 0 chr1 103117875 103118165 -179075499 - Tigger7 DNA MER2_type 0 2587 2270 804 244 6 0 chr1 103118163 103118331 -179075333 - Tigger7 DNA MER2_type -536 169 1 * 2074 108 4 0 chr1 103118402 103118716 -179074948 - AluSg SINE Alu 0 317 3 1569 127 115 20 chr1 103118849 103119101 -179074563 - AluJb SINE Alu -19 293 18 687 179 0 66 chr1 103119135 103119286 -179074378 + FLAM_C SINE Alu 2 142 -1 2129 116 17 0 chr1 103119326 103119620 -179074044 + AluSx SINE Alu 1 299 -13 2478 56 0 17 chr1 103119620 103119922 -179073742 + AluY SINE Alu 1 297 -14 314 180 140 10 chr1 103119923 103120023 -179073641 + L1ME LINE L1 2988 3100 -3046 1854 150 133 48 chr1 103120023 103120423 -179073241 + Tigger2a DNA MER2_type 1 434 0 437 228 40 0 chr1 103120428 103120529 -179073135 + L1ME LINE L1 5524 5628 -538 25 31 0 0 chr1 103121216 103121248 -179072416 + GC_rich Low_complexity Low_complexity 1 32 0 284 0 0 27 chr1 103121708 103121745 -179071919 + (TG)n Simple_repeat Simple_repeat 1 36 0 216 0 0 0 chr1 103121744 103121768 -179071896 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 250 189 19 160 chr1 103122423 103122529 -179071135 + MIR SINE MIR 167 257 -5 337 281 89 37 chr1 103122740 103122875 -179070789 + MIR3 SINE MIR 3 144 -64 1348 163 194 3 chr1 103123898 103124186 -179069478 - MSTD LTR MaLR -2 394 52 1735 194 11 0 chr1 103124189 103124473 -179069191 - AluJo SINE Alu -25 287 1 23 0 0 0 chr1 103124586 103124609 -179069055 + AT_rich Low_complexity Low_complexity 1 23 0 832 204 22 22 chr1 103124937 103125118 -179068546 - MLT1A1 LTR MaLR 0 365 185 272 149 85 0 chr1 103125128 103125175 -179068489 - MLT1A1 LTR MaLR -314 51 1 189 0 0 0 chr1 103125256 103125277 -179068387 + (T)n Simple_repeat Simple_repeat 1 21 0 2145 60 0 30 chr1 103125310 103125579 -179068085 + AluY SINE Alu 42 302 -9 2066 130 17 17 chr1 103125900 103126201 -179067463 - AluSx SINE Alu -11 301 1 1631 133 4 17 chr1 103126878 103127112 -179066552 - AluSx SINE Alu -81 231 1 1994 138 21 0 chr1 103127339 103127629 -179066035 + AluSx SINE Alu 1 296 -16 1753 232 133 70 chr1 103127844 103128468 -179065196 + MER21B LTR ERV1 1 681 -182 2519 72 0 0 chr1 103128468 103128773 -179064891 - AluSg SINE Alu -5 305 1 1753 232 133 70 chr1 103128773 103128895 -179064769 + MER21B LTR ERV1 681 794 -69 222 268 307 17 chr1 103129159 103129390 -179064274 + L2 LINE L2 2244 2541 -773 212 175 0 0 chr1 103129427 103129467 -179064197 + A-rich Low_complexity Low_complexity 1 40 0 2145 138 0 7 chr1 103129544 103129849 -179063815 + AluSx SINE Alu 1 303 -9 204 363 18 42 chr1 103130146 103130314 -179063350 - L2 LINE L2 -443 2871 2708 2202 93 0 42 chr1 103130316 103130626 -179063038 - AluSg SINE Alu -13 297 1 727 201 50 0 chr1 103130664 103130803 -179062861 + FRAM SINE Alu 8 153 -23 368 226 10 39 chr1 103131034 103131136 -179062528 - AluJb SINE Alu -192 110 12 2202 95 0 3 chr1 103132808 103133091 -179060573 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr1 103133326 103133350 -179060314 + (T)n Simple_repeat Simple_repeat 1 24 0 2072 95 11 11 chr1 103133396 103133680 -179059984 + AluSx SINE Alu 12 295 -17 483 207 112 0 chr1 103133685 103133801 -179059863 - FAM SINE Alu -35 150 22 1894 63 94 12 chr1 103134156 103134410 -179059254 + AluSg SINE Alu 1 275 -35 1152 191 164 12 chr1 103134421 103134677 -179058987 + AluJo SINE Alu 6 300 -12 182 241 0 108 chr1 103134689 103134772 -179058892 + L2 LINE L2 3199 3272 0 311 295 77 29 chr1 103134785 103134992 -179058672 - L2 LINE L2 -1283 2031 1815 753 169 7 22 chr1 103135306 103135442 -179058222 + FLAM_C SINE Alu 7 140 -3 1359 43 0 0 chr1 103135593 103135756 -179057908 - L1PA5 LINE L1 0 6154 5992 1963 124 0 0 chr1 103136039 103136305 -179057359 + AluSx SINE Alu 1 266 -46 2015 148 0 25 chr1 103136566 103136600 -179057064 - AluSx SINE Alu -1 311 278 181 0 69 0 chr1 103136600 103136629 -179057035 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2015 148 0 25 chr1 103136629 103136912 -179056752 - AluSx SINE Alu -34 278 2 1924 166 0 0 chr1 103136913 103137214 -179056450 - AluJb SINE Alu -4 308 8 1930 129 7 23 chr1 103137315 103137617 -179056047 + AluJb SINE Alu 1 297 -15 2079 125 13 7 chr1 103137817 103138122 -179055542 + AluSx SINE Alu 3 309 -3 242 169 289 0 chr1 103138590 103138673 -179054991 - L1MC4 LINE L1 -8 8034 7928 808 203 126 6 chr1 103139061 103139243 -179054421 + MER3 DNA MER1_type 2 205 -4 1495 172 29 55 chr1 103139300 103139608 -179054056 + AluJo SINE Alu 6 305 -7 286 103 0 0 chr1 103139853 103139892 -179053772 + AluJo SINE Alu 1 39 -263 1245 133 0 51 chr1 103140512 103140708 -179052956 + AluJo SINE Alu 27 212 -100 506 155 35 0 chr1 103140809 103140925 -179052739 + GA-rich Low_complexity Low_complexity 2 121 0 219 270 40 0 chr1 103140982 103141056 -179052608 - MIR SINE MIR -67 141 65 550 80 13 0 chr1 103141233 103141308 -179052356 + AluSg SINE Alu 58 133 -177 187 338 28 0 chr1 103141315 103141386 -179052278 - MIR SINE MIR -162 100 28 1944 165 3 0 chr1 103141532 103141835 -179051829 + AluJb SINE Alu 1 304 -8 2410 58 0 0 chr1 103142111 103142389 -179051275 + AluY SINE Alu 1 278 -33 360 0 0 0 chr1 103142389 103142429 -179051235 + (CA)n Simple_repeat Simple_repeat 1 40 0 1735 162 14 28 chr1 103142679 103142963 -179050701 - AluJo SINE Alu -31 281 2 632 251 122 53 chr1 103143180 103143658 -179050006 - L2 LINE L2 -60 3253 2715 1899 148 33 3 chr1 103143852 103144155 -179049509 + AluJo SINE Alu 1 312 0 240 35 0 0 chr1 103144166 103144195 -179049469 + (GA)n Simple_repeat Simple_repeat 2 30 0 238 316 173 0 chr1 103144639 103144772 -179048892 - MIR3 SINE MIR 0 208 53 2133 107 3 3 chr1 103144786 103145102 -179048562 - AluSq SINE Alu 0 316 1 305 115 0 58 chr1 103145950 103146002 -179047662 - L1MD3 LINE L1 -217 7778 7730 917 186 0 33 chr1 103146450 103146633 -179047031 + AluSq SINE Alu 117 293 -20 801 158 0 16 chr1 103146635 103146762 -179046902 - AluJo/FLAM SINE Alu -187 125 1 364 252 39 51 chr1 103146762 103147042 -179046622 - L1M4 LINE L1 -987 5159 4869 525 274 79 34 chr1 103147265 103147518 -179046146 - L1M4 LINE L1 -1393 4753 4478 2511 52 0 13 chr1 103147518 103147824 -179045840 - AluY SINE Alu -9 302 1 525 274 79 34 chr1 103147824 103147924 -179045740 - L1M4 LINE L1 -1668 4478 4384 1016 161 6 0 chr1 103147931 103148092 -179045572 + AluJb SINE Alu 136 297 -15 523 249 97 83 chr1 103148093 103148175 -179045489 - L1ME LINE L1 -665 5497 5418 730 142 0 64 chr1 103148175 103148316 -179045348 - FLAM_C SINE Alu 0 133 2 523 249 97 83 chr1 103148316 103148605 -179045059 - L1ME LINE L1 -744 5418 5129 1054 167 45 20 chr1 103148852 103149050 -179044614 - MER3 DNA MER1_type 0 209 7 2309 101 0 16 chr1 103149109 103149415 -179044249 - AluSc SINE Alu -8 301 1 1238 137 18 32 chr1 103149423 103149642 -179044022 - AluJo SINE Alu -2 310 95 1742 186 17 77 chr1 103149750 103150013 -179043651 - MLT1B LTR MaLR 0 390 113 1854 172 0 7 chr1 103150013 103150315 -179043349 + AluJo SINE Alu 5 304 -8 1742 186 17 77 chr1 103150315 103150379 -179043285 - MLT1B LTR MaLR -277 113 91 2026 139 33 12 chr1 103150379 103150716 -179042948 - MER2 DNA MER2_type 0 344 1 1742 186 17 77 chr1 103150716 103150802 -179042862 - MLT1B LTR MaLR -299 91 1 440 216 37 15 chr1 103150818 103150952 -179042712 - L1ME LINE L1 -2171 3975 3839 2371 85 3 3 chr1 103151250 103151556 -179042108 + AluSg SINE Alu 1 306 -4 1079 136 6 6 chr1 103151561 103151723 -179041941 + FRAM SINE Alu 1 162 -14 993 221 85 50 chr1 103151794 103151886 -179041778 + MLT1C LTR MaLR 1 88 -379 1963 144 7 3 chr1 103151886 103152184 -179041480 + AluSx SINE Alu 1 299 -13 993 221 85 50 chr1 103152184 103152279 -179041385 + MLT1C LTR MaLR 88 178 -289 1556 182 54 0 chr1 103152279 103152559 -179041105 + AluJb SINE Alu 1 295 -17 993 221 85 50 chr1 103152559 103152687 -179040977 + MLT1C LTR MaLR 178 328 -139 2737 166 46 46 chr1 103152724 103153248 -179040416 + Tigger7 DNA MER2_type 3 526 -1961 420 171 134 0 chr1 103153279 103153361 -179040303 + Tigger7 DNA MER2_type 2399 2491 0 483 198 0 11 chr1 103153365 103153456 -179040208 + MLT1C LTR MaLR 378 467 0 2253 89 4 0 chr1 103153490 103153770 -179039894 + AluSp SINE Alu 1 281 -32 468 0 0 0 chr1 103153770 103153822 -179039842 + (TAAAA)n Simple_repeat Simple_repeat 1 52 0 354 170 0 0 chr1 103153822 103153887 -179039777 + FRAM/FAM SINE Alu 30 85 -90 334 202 24 24 chr1 103153897 103153981 -179039683 + MER21-int LTR ERV1 3293 3376 -815 2252 89 0 13 chr1 103154258 103154562 -179039102 + AluSx SINE Alu 1 300 -12 820 130 6 111 chr1 103154738 103154799 -179038865 + 7SLRNA srpRNA srpRNA 152 218 -102 1923 140 4 0 chr1 103154799 103155078 -179038586 + AluSx SINE Alu 1 280 -32 194 0 0 37 chr1 103155078 103155105 -179038559 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 820 130 6 111 chr1 103155105 103155204 -179038460 + 7SLRNA srpRNA srpRNA 216 296 -24 540 0 0 0 chr1 103155208 103155268 -179038396 + (TA)n Simple_repeat Simple_repeat 2 61 0 2058 126 10 0 chr1 103155481 103155775 -179037889 + AluJb SINE Alu 1 297 -15 2052 128 13 7 chr1 103155975 103156280 -179037384 + AluSx SINE Alu 3 309 -3 242 169 289 0 chr1 103156748 103156831 -179036833 - L1MC4 LINE L1 -8 8034 7928 808 203 126 6 chr1 103157218 103157400 -179036264 + MER3 DNA MER1_type 2 205 -4 1485 169 29 55 chr1 103157457 103157765 -179035899 + AluJo SINE Alu 6 305 -7 2477 65 0 0 chr1 103158010 103158304 -179035360 + AluY SINE Alu 1 294 -17 1412 170 188 19 chr1 103158305 103158627 -179035037 - L1MC1 LINE L1 -13 6320 6054 1750 153 19 25 chr1 103158627 103158941 -179034723 - AluSx SINE Alu 0 312 1 1412 170 188 19 chr1 103158941 103159013 -179034651 - L1MC1 LINE L1 -279 6054 5996 2026 153 3 0 chr1 103159013 103159314 -179034350 - AluSx SINE Alu -10 302 1 1412 170 188 19 chr1 103159314 103159473 -179034191 - L1MC1 LINE L1 -337 5996 5673 1523 194 35 3 chr1 103159572 103159861 -179033803 + AluJo SINE Alu 1 298 -14 486 137 0 0 chr1 103159918 103159991 -179033673 + AluS SINE Alu 224 296 -14 257 178 0 0 chr1 103160109 103160154 -179033510 + HsTC2 DNA Tc2 1441 1485 -413 468 130 0 0 chr1 103160214 103160291 -179033373 - FLAM_C SINE Alu 0 143 67 1837 159 0 7 chr1 103160291 103160581 -179033083 - AluJb SINE Alu -24 288 1 374 254 139 85 chr1 103160675 103160803 -179032861 - MER5B DNA MER1_type -1 177 37 3622 164 40 14 chr1 103160803 103161508 -179032156 + L1MB2 LINE L1 5448 6170 -1 374 254 139 85 chr1 103161508 103161544 -179032120 - MER5B DNA MER1_type -141 37 4 2229 131 0 0 chr1 103161827 103162139 -179031525 + AluSx SINE Alu 1 312 0 1846 153 7 3 chr1 103162146 103162428 -179031236 + AluSx SINE Alu 1 283 -29 2232 80 40 3 chr1 103162674 103162974 -179030690 + AluY SINE Alu 1 311 0 2061 142 0 0 chr1 103163144 103163433 -179030231 - AluSq SINE Alu -24 289 1 2205 92 34 0 chr1 103163841 103164136 -179029528 + AluSp SINE Alu 1 305 -8 1703 148 13 46 chr1 103164680 103164848 -179028816 - AluSx SINE Alu -19 293 138 2256 122 0 0 chr1 103164848 103165160 -179028504 - AluSx SINE Alu 0 312 1 1703 148 13 46 chr1 103165160 103165294 -179028370 - AluSx SINE Alu -174 138 1 234 0 0 0 chr1 103165678 103165704 -179027960 + (TG)n Simple_repeat Simple_repeat 2 27 0 2185 102 3 16 chr1 103165710 103166013 -179027651 - AluSx SINE Alu -13 299 1 2239 102 3 0 chr1 103166367 103166661 -179027003 + AluSc SINE Alu 1 295 -14 283 65 0 43 chr1 103166661 103166707 -179026957 - MER4B-int LTR ERV1 -2590 4168 4125 451 84 0 0 chr1 103166818 103166889 -179026775 - Alu SINE Alu 0 311 241 687 202 16 0 chr1 103167206 103167330 -179026334 - FLAM_A SINE Alu -7 126 1 2114 109 0 0 chr1 103167590 103167866 -179025798 + AluSg SINE Alu 3 278 -32 1001 142 50 123 chr1 103168024 103168243 -179025421 + MLT1C LTR MaLR 185 464 -3 389 261 43 26 chr1 103168648 103168763 -179024901 + MIR SINE MIR 16 132 -130 589 132 0 0 chr1 103169576 103169667 -179023997 + L1PA12 LINE L1 5929 6019 -149 1347 136 47 21 chr1 103169903 103170138 -179023526 + MER2 DNA MER2_type 9 249 -96 1059 169 47 33 chr1 103170585 103170798 -179022866 + MER20 DNA MER1_type 2 217 -2 199 256 23 58 chr1 103171163 103171249 -179022415 - L3 LINE CR1 -806 771 689 6369 64 58 31 chr1 103171249 103172196 -179021468 - SVA Other Other 0 1386 433 1417 92 9 68 chr1 103172212 103172676 -179020988 - SVA Other Other -518 868 508 780 144 40 0 chr1 103173543 103173668 -179019996 + FLAM_C SINE Alu 1 130 -3 772 97 48 48 chr1 103173791 103173903 -179019761 + AluJo SINE Alu 11 125 -187 216 0 0 0 chr1 103173903 103173927 -179019737 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 772 97 48 48 chr1 103173927 103173938 -179019726 + AluJo SINE Alu 124 134 -178 487 220 158 34 chr1 103174522 103174699 -179018965 + MLT1J LTR MaLR 1 199 -312 1965 99 0 91 chr1 103174729 103175071 -179018593 + AluY SINE Alu 1 311 0 240 257 168 45 chr1 103175101 103175280 -179018384 + MLT1J LTR MaLR 240 440 -71 1488 151 19 35 chr1 103175542 103175800 -179017864 + AluJo SINE Alu 28 281 -31 186 292 14 56 chr1 103176171 103176243 -179017421 - MIR SINE MIR -188 74 6 420 304 27 20 chr1 103176277 103176425 -179017239 - MIR SINE MIR -110 152 4 180 261 0 22 chr1 103176663 103176709 -179016955 - L2 LINE L2 -88 3225 3181 24 0 0 0 chr1 103176996 103177020 -179016644 + AT_rich Low_complexity Low_complexity 1 24 0 677 174 97 107 chr1 103178734 103178930 -179014734 - MER20 DNA MER1_type -3 216 23 260 232 135 14 chr1 103178952 103179103 -179014561 + L1ME LINE L1 5660 5829 -333 1911 176 0 7 chr1 103181227 103181529 -179012135 + AluJb SINE Alu 5 304 -8 963 210 258 0 chr1 103181587 103181858 -179011806 - MER2 DNA MER2_type -2 342 2 1973 167 42 42 chr1 103181992 103182291 -179011373 + Tigger1 DNA MER2_type 3 304 -2114 1927 140 7 3 chr1 103182291 103182576 -179011088 + AluSx SINE Alu 4 289 -23 1973 167 42 42 chr1 103182576 103182677 -179010987 + Tigger1 DNA MER2_type 303 403 -2015 1399 193 0 4 chr1 103183829 103184067 -179009597 - AluJo SINE Alu -63 249 13 2282 96 90 11 chr1 103184472 103184827 -179008837 - MER11C LTR ERVK 0 1071 689 3191 149 31 59 chr1 103184952 103185628 -179008036 - L1 LINE L1 -2313 3833 3177 27 29 0 0 chr1 103185633 103185667 -179007997 + AT_rich Low_complexity Low_complexity 1 34 0 231 36 0 0 chr1 103185971 103185999 -179007665 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 342 253 86 86 chr1 103186005 103186274 -179007390 - MLT1L LTR MaLR -335 280 12 195 330 51 91 chr1 103186395 103186592 -179007072 + MIR3 SINE MIR 4 192 -16 22 70 0 0 chr1 103186797 103186840 -179006824 + AT_rich Low_complexity Low_complexity 1 43 0 697 141 0 67 chr1 103187732 103187867 -179005797 - MLT1C LTR MaLR -341 126 1 601 269 45 25 chr1 103187867 103188067 -179005597 + MLT1F LTR MaLR 337 540 -2 186 150 150 0 chr1 103191111 103191151 -179002513 - L2 LINE L2 -7 3306 3261 1815 133 14 18 chr1 103191571 103191856 -179001808 + AluSx SINE Alu 5 288 -24 2937 147 70 16 chr1 103192001 103192575 -179001089 + Tigger7 DNA MER2_type 1 2487 0 333 232 0 56 chr1 103192839 103192964 -179000700 + AluSp/q SINE Alu 174 291 -12 2389 62 0 31 chr1 103193102 103193423 -179000241 - AluY SINE Alu 0 311 1 2294 109 0 3 chr1 103194010 103194314 -178999350 - AluSx SINE Alu -9 303 1 888 203 11 28 chr1 103194452 103194629 -178999035 - AluJo SINE Alu -16 296 123 524 186 9 9 chr1 103194751 103194864 -178998800 - MLT1A1-int LTR MaLR -1620 115 3 2222 142 22 30 chr1 103194865 103195231 -178998433 - MLT1A1 LTR MaLR -2 363 1 309 213 113 0 chr1 103195254 103195334 -178998330 - L1ME3A LINE L1 -196 5974 5886 519 282 67 5 chr1 103195502 103195697 -178997967 + MIR SINE MIR 52 258 -4 271 316 108 6 chr1 103196682 103196840 -178996824 + MARNA DNA Mariner 66 239 -347 2126 103 10 0 chr1 103196886 103197199 -178996465 - AluSp SINE Alu 0 313 1 1673 229 87 0 chr1 103197200 103197649 -178996015 - L1ME3A LINE L1 -816 5330 4843 645 173 0 153 chr1 103197656 103197806 -178995858 + FLAM_A SINE Alu 6 132 -10 784 206 48 43 chr1 103197807 103198016 -178995648 - L1ME3A LINE L1 -1287 4859 4650 891 220 6 0 chr1 103198019 103198192 -178995472 - FRAM SINE Alu -8 168 1 479 285 68 38 chr1 103198398 103198661 -178995003 + MLT1L LTR MaLR 21 291 -324 2480 54 0 3 chr1 103198816 103199112 -178994552 - AluSg SINE Alu -15 295 1 848 118 15 15 chr1 103199112 103199247 -178994417 - AluSq/x SINE Alu -177 135 1 216 0 0 0 chr1 103199631 103199655 -178994009 + (TG)n Simple_repeat Simple_repeat 2 25 0 2139 99 3 20 chr1 103199662 103199966 -178993698 - AluSx SINE Alu -13 299 1 2251 98 3 0 chr1 103200320 103200615 -178993049 + AluSc SINE Alu 1 296 -13 1046 201 37 127 chr1 103200663 103200879 -178992785 + L1ME3A LINE L1 5728 5890 -274 2089 134 7 3 chr1 103200879 103201184 -178992480 + AluSx SINE Alu 1 306 -6 1046 201 37 127 chr1 103201184 103201376 -178992288 + L1ME3A LINE L1 5890 6098 -66 211 175 0 0 chr1 103201683 103201723 -178991941 - L2 LINE L2 -2 3311 3272 23 0 0 0 chr1 103201789 103201812 -178991852 + AT_rich Low_complexity Low_complexity 1 23 0 2108 127 3 13 chr1 103202558 103202866 -178990798 - AluSx SINE Alu -7 305 1 472 186 121 24 chr1 103203652 103203776 -178989888 + MER3 DNA MER1_type 41 129 -80 * 998 193 206 3 chr1 103203771 103204092 -178989572 + MER3 DNA MER1_type 2238 2623 0 660 174 0 9 chr1 103205745 103205860 -178987804 + FRAM SINE Alu 48 161 -15 234 244 205 0 chr1 103205912 103205990 -178987674 + MIR SINE MIR 136 229 -33 1571 201 146 37 chr1 103206176 103206647 -178987017 - L1MEc LINE L1 -3238 2977 2559 197 33 33 0 chr1 103206647 103206677 -178986987 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2097 94 7 4 chr1 103206687 103206962 -178986702 - AluSq SINE Alu -37 276 1 2145 120 0 3 chr1 103206971 103207272 -178986392 - AluSq SINE Alu -1 312 13 1571 201 146 37 chr1 103207272 103207427 -178986237 - L1MEc LINE L1 -3671 2544 2407 2647 95 14 0 chr1 103207427 103207786 -178985878 - L1PA14 LINE L1 0 6161 5798 1571 201 146 37 chr1 103207786 103208081 -178985583 - L1MEc LINE L1 -3808 2407 1765 288 77 0 0 chr1 103208081 103208120 -178985544 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2095 118 7 0 chr1 103208121 103208410 -178985254 - AluSq SINE Alu -21 292 2 972 135 0 0 chr1 103208413 103208546 -178985118 - AluSq/x SINE Alu -179 133 1 2273 78 3 7 chr1 103208684 103208991 -178984673 - AluY SINE Alu -5 306 1 2218 80 0 11 chr1 103209017 103209328 -178984336 + AluY SINE Alu 1 308 0 854 129 8 8 chr1 103209735 103209859 -178983805 - FLAM_C SINE Alu -19 124 1 2392 71 0 0 chr1 103210596 103210891 -178982773 + AluSc SINE Alu 1 295 -14 477 185 134 0 chr1 103211179 103211298 -178982366 + MIR SINE MIR 82 216 -46 479 265 34 0 chr1 103211569 103211686 -178981978 - MIR SINE MIR -22 240 120 204 170 19 38 chr1 103212849 103212902 -178980762 + C-rich Low_complexity Low_complexity 5 56 0 190 248 224 64 chr1 103213661 103213786 -178979878 + MIR3 SINE MIR 60 204 -4 1926 128 0 61 chr1 103213788 103214117 -178979547 - AluSx SINE Alu -3 309 1 195 205 0 0 chr1 103214289 103214328 -178979336 + L2 LINE L2 2596 2634 -680 229 268 56 14 chr1 103214344 103214415 -178979249 - L2 LINE L2 -13 3300 3227 2605 118 11 14 chr1 103214515 103214880 -178978784 + THE1B LTR MaLR 1 364 0 2163 110 14 0 chr1 103214972 103215263 -178978401 + AluSq SINE Alu 1 295 -18 2343 96 0 10 chr1 103215423 103215736 -178977928 - AluSx SINE Alu -2 310 1 1812 138 65 21 chr1 103216220 103216511 -178977153 - AluSq SINE Alu -7 306 3 2354 97 7 0 chr1 103216961 103217269 -178976395 - AluSq SINE Alu -3 310 1 689 112 112 32 chr1 103217269 103217394 -178976270 - MIR SINE MIR -112 150 16 2144 133 0 3 chr1 103217450 103217750 -178975914 - AluSx SINE Alu -13 299 1 1654 194 7 17 chr1 103217888 103218187 -178975477 - AluJo SINE Alu -16 296 1 2427 137 60 38 chr1 103218212 103218250 -178975414 - MSTB LTR MaLR 0 426 390 1472 215 13 10 chr1 103218250 103218561 -178975103 + AluJo SINE Alu 1 312 0 2427 137 60 38 chr1 103218561 103218939 -178974725 - MSTB LTR MaLR -36 390 1 392 277 64 21 chr1 103219193 103219334 -178974330 - L2 LINE L2 -5 3308 3162 218 231 58 0 chr1 103219356 103219408 -178974256 - L2 LINE L2 -327 2986 2932 336 322 191 21 chr1 103219441 103219923 -178973741 + L2 LINE L2 1539 2102 -1212 * 705 298 84 20 chr1 103219900 103220199 -178973465 + L2 LINE L2 2985 3302 -11 414 310 31 23 chr1 103220179 103220308 -178973356 - L2 LINE L2 -7 3265 3136 * 340 285 225 49 chr1 103220544 103220811 -178972853 - L2 LINE L2 -157 3156 2843 5788 34 6 0 chr1 103220811 103221492 -178972172 - L1PA5 LINE L1 -1402 4744 4060 7903 36 6 1 chr1 103221497 103222910 -178970754 + L1PA5 LINE L1 4732 6149 -5 1150 259 140 0 chr1 103222980 103223351 -178970313 - L2 LINE L2 -524 2790 2368 362 192 162 0 chr1 103224432 103224531 -178969133 + Charlie7 DNA MER1_type 43 157 -2455 276 281 82 7 chr1 103225040 103225186 -178968478 - L1ME4a LINE L1 0 6121 5965 1802 141 14 10 chr1 103225209 103225499 -178968165 + AluSx SINE Alu 1 291 -21 236 216 103 0 chr1 103225619 103225716 -178967948 + L1MC4 LINE L1 7918 8024 -18 276 56 0 0 chr1 103226027 103226063 -178967601 + MADE1 DNA Mariner 41 76 -4 2305 64 14 7 chr1 103226339 103226655 -178967009 + AluY SINE Alu 1 311 0 2168 104 3 3 chr1 103226737 103227035 -178966629 - AluSp SINE Alu -15 298 1 21 71 0 0 chr1 103227539 103227581 -178966083 + AT_rich Low_complexity Low_complexity 1 42 0 776 136 0 2 chr1 103227748 103227994 -178965670 + AluJ SINE Alu 3 295 -17 222 62 0 0 chr1 103229018 103229050 -178964614 + (TATG)n Simple_repeat Simple_repeat 3 34 0 765 167 8 0 chr1 103229050 103229165 -178964499 - FLAM_C SINE Alu -12 117 1 189 0 0 0 chr1 103229292 103229313 -178964351 + (CAG)n Simple_repeat Simple_repeat 2 22 0 2315 62 35 0 chr1 103230885 103231173 -178962491 - AluY SINE Alu -13 298 1 1884 128 65 0 chr1 103231299 103231589 -178962075 - AluSx SINE Alu -3 309 1 33 53 0 26 chr1 103232226 103232265 -178961399 + AT_rich Low_complexity Low_complexity 1 39 -35 1819 130 14 24 chr1 103232265 103232558 -178961106 - AluJb SINE Alu -22 290 1 33 53 0 26 chr1 103232558 103232594 -178961070 + AT_rich Low_complexity Low_complexity 39 74 0 1944 83 76 0 chr1 103232701 103232978 -178960686 - AluY SINE Alu -12 299 2 1019 120 0 0 chr1 103232981 103233114 -178960550 - AluSq/x SINE Alu -179 133 1 2520 43 3 0 chr1 103233252 103233557 -178960107 - AluY SINE Alu -5 306 1 1737 143 71 0 chr1 103234559 103234839 -178958825 - AluSx SINE Alu -12 300 1 2147 100 0 44 chr1 103234946 103235265 -178958399 - AluSg SINE Alu -5 305 1 2096 130 3 0 chr1 103235466 103235766 -178957898 - AluSg SINE Alu -9 301 1 2073 124 0 0 chr1 103236004 103236320 -178957344 - AluSx SINE Alu 0 312 1 23 0 0 0 chr1 103236557 103236580 -178957084 + AT_rich Low_complexity Low_complexity 1 23 0 609 91 0 0 chr1 103236635 103236712 -178956952 - AluS SINE Alu -230 82 6 2050 136 0 0 chr1 103236994 103237280 -178956384 - AluSx SINE Alu -26 286 1 2253 101 0 0 chr1 103238420 103238716 -178954948 - AluY SINE Alu -15 296 1 22 0 0 0 chr1 103238765 103238787 -178954877 + AT_rich Low_complexity Low_complexity 1 22 0 2021 101 51 3 chr1 103239330 103239626 -178954038 + AluY SINE Alu 1 310 -1 28 48 0 0 chr1 103239979 103240021 -178953643 + AT_rich Low_complexity Low_complexity 1 42 0 685 118 0 0 chr1 103240333 103240435 -178953229 - AluSg/x SINE Alu 0 310 209 2124 138 0 0 chr1 103240856 103241154 -178952510 - AluSx SINE Alu -14 298 1 448 276 99 0 chr1 103241688 103241869 -178951795 + MIR SINE MIR 64 262 0 332 281 114 0 chr1 103242170 103242284 -178951380 + MIR SINE MIR 65 191 -71 2762 16 0 6 chr1 103242903 103243214 -178950450 + AluYa5 SINE Alu 1 309 -2 387 0 0 0 chr1 103243722 103243765 -178949899 + (TG)n Simple_repeat Simple_repeat 2 44 0 1148 110 0 31 chr1 103243773 103243936 -178949728 - AluSg/x SINE Alu -21 291 134 1936 112 4 4 chr1 103243936 103244204 -178949460 - AluSq SINE Alu -5 308 41 2098 138 7 0 chr1 103244548 103244853 -178948811 - AluSx SINE Alu -5 307 1 556 325 114 41 chr1 103245110 103245788 -178947876 - L2 LINE L2 -954 2360 1634 2586 66 30 0 chr1 103246478 103246812 -178946852 + L1PA7 LINE L1 5805 6148 -6 186 329 101 31 chr1 103247215 103247443 -178946221 - L2 LINE L2 -475 2839 2596 305 351 40 14 chr1 103248042 103248190 -178945474 + L2 LINE L2 2227 2378 -936 1624 157 34 34 chr1 103248195 103248488 -178945176 - AluJb SINE Alu -19 293 1 282 261 59 34 chr1 103249093 103249212 -178944452 - MLT1K LTR MaLR -22 566 445 226 253 60 12 chr1 103249452 103249535 -178944129 - MLT1L LTR MaLR -409 206 120 254 191 0 0 chr1 103249584 103249626 -178944038 + L2 LINE L2 3221 3262 -10 352 41 0 20 chr1 103249669 103249718 -178943946 + MSTC LTR MaLR 1 48 -380 1983 151 3 3 chr1 103249725 103250023 -178943641 + AluSq SINE Alu 1 298 -15 2121 127 3 13 chr1 103250670 103250978 -178942686 - AluSx SINE Alu -7 305 1 412 186 121 24 chr1 103251764 103251888 -178941776 + MER3 DNA MER1_type 41 129 -80 * 820 194 171 3 chr1 103251883 103252187 -178941477 + MER3 DNA MER1_type 2238 2592 0 629 165 0 9 chr1 103253857 103253972 -178939692 + FRAM SINE Alu 48 161 -15 252 266 170 11 chr1 103254008 103254102 -178939562 + MIR SINE MIR 121 229 -33 1609 217 80 39 chr1 103254287 103254760 -178938904 - L1MEc LINE L1 -3238 2977 2525 279 0 0 0 chr1 103254760 103254791 -178938873 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2178 99 3 3 chr1 103254796 103255079 -178938585 - AluSq SINE Alu -30 283 1 2153 120 0 3 chr1 103255088 103255389 -178938275 - AluSq SINE Alu -1 312 13 1609 217 80 39 chr1 103255389 103255544 -178938120 - L1MEc LINE L1 -3700 2515 2368 2458 95 14 0 chr1 103255544 103255903 -178937761 - L1PA14 LINE L1 0 6161 5798 1609 217 80 39 chr1 103255903 103256242 -178937422 - L1MEc LINE L1 -3847 2368 2044 2227 110 0 0 chr1 103256242 103256534 -178937130 - AluSq SINE Alu -21 292 1 1609 217 80 39 chr1 103256534 103256685 -178936979 - L1MEc LINE L1 -4171 2044 1628 2403 185 73 36 chr1 103256687 103257177 -178936487 - L1MC2 LINE L1 -10 6334 5814 2651 139 79 19 chr1 103257177 103257710 -178935954 - L1MA8 LINE L1 -8 6283 5719 2403 185 73 36 chr1 103257710 103257852 -178935812 - L1MC2 LINE L1 -530 5814 5679 1805 147 9 67 chr1 103257863 103258190 -178935474 - AluJb SINE Alu -4 308 1 1040 264 140 42 chr1 103258191 103258587 -178935077 - L1MEc LINE L1 -4619 1596 1241 1948 128 0 50 chr1 103258587 103258906 -178934758 - AluSx SINE Alu -7 305 3 1040 264 140 42 chr1 103258906 103259295 -178934369 - L1MEc LINE L1 -4974 1241 758 625 209 54 0 chr1 103259574 103259722 -178933942 + MER3 DNA MER1_type 16 124 -85 238 91 0 0 chr1 103259827 103259860 -178933804 - Alu SINE Alu -267 33 1 2050 118 42 0 chr1 103260347 103260635 -178933029 + AluSq SINE Alu 1 300 -13 2118 137 3 0 chr1 103260949 103261248 -178932416 + AluSx SINE Alu 1 300 -12 2002 147 7 10 chr1 103261258 103261565 -178932099 + AluSx SINE Alu 2 307 -5 23 0 0 0 chr1 103261798 103261821 -178931843 + AT_rich Low_complexity Low_complexity 1 23 0 209 188 0 0 chr1 103262042 103262074 -178931590 - MIR SINE MIR -171 91 60 23 0 0 0 chr1 103262389 103262412 -178931252 + AT_rich Low_complexity Low_complexity 1 23 0 1818 176 16 7 chr1 103263168 103263475 -178930189 + AluJb SINE Alu 2 311 -1 1060 165 0 6 chr1 103263478 103263648 -178930016 + AluJb SINE Alu 141 309 -3 21 57 0 0 chr1 103263684 103263719 -178929945 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 103264025 103264055 -178929609 + AT_rich Low_complexity Low_complexity 1 30 0 1653 151 0 29 chr1 103264152 103264430 -178929234 + AluJb SINE Alu 11 280 -32 183 42 0 0 chr1 103264430 103264454 -178929210 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 33 25 0 0 chr1 103264533 103264573 -178929091 + AT_rich Low_complexity Low_complexity 1 40 0 294 370 58 14 chr1 103264828 103264965 -178928699 + L2 LINE L2 211 353 -2961 870 199 58 0 chr1 103264965 103265136 -178928528 + MER5A DNA MER1_type 2 182 -7 2487 252 170 34 chr1 103265136 103265671 -178927993 + L2 LINE L2 386 847 -2467 1971 123 7 18 chr1 103265671 103265982 -178927682 - AluSx SINE Alu 0 308 1 2487 252 170 34 chr1 103265982 103266469 -178927195 + L2 LINE L2 847 1548 -1766 2362 72 0 16 chr1 103266661 103266966 -178926698 - AluY SINE Alu -11 300 1 252 157 0 0 chr1 103266993 103267044 -178926620 - L1MB7 LINE L1 -42 6142 6092 25 0 0 0 chr1 103267243 103267268 -178926396 + AT_rich Low_complexity Low_complexity 1 25 0 2098 97 0 0 chr1 103267345 103267603 -178926061 - AluSc SINE Alu -15 294 37 348 286 176 31 chr1 103267773 103268078 -178925586 - L1ME LINE L1 -299 5822 5446 1855 153 0 37 chr1 103268078 103268399 -178925265 - AluJo SINE Alu 0 312 4 348 286 176 31 chr1 103268399 103268485 -178925179 - L1ME LINE L1 -675 5446 5374 25 31 0 0 chr1 103268581 103268613 -178925051 + AT_rich Low_complexity Low_complexity 1 32 0 2206 117 7 0 chr1 103269442 103269740 -178923924 + AluSx SINE Alu 1 300 -12 292 233 30 23 chr1 103269819 103269952 -178923712 + L1MEd LINE L1 945 1078 -5041 271 143 16 63 chr1 103269952 103270015 -178923649 + MER58 DNA MER1_type 2361 2420 0 312 314 122 17 chr1 103270096 103270268 -178923396 + L1MEd LINE L1 1055 1244 -4887 255 263 12 12 chr1 103270293 103270373 -178923291 + L1MEd LINE L1 1436 1515 -4795 1599 133 82 30 chr1 103270687 103270957 -178922707 + AluSx SINE Alu 2 285 -27 2140 117 0 31 chr1 103271364 103271681 -178921983 - AluJb SINE Alu 0 312 6 287 296 0 0 chr1 103271691 103271779 -178921885 - MLT1J2 LTR MaLR -273 177 90 346 245 112 31 chr1 103271830 103272026 -178921638 + L1ME3 LINE L1 5339 5550 -614 721 216 60 12 chr1 103272026 103272193 -178921471 + AluJo SINE Alu 121 295 -17 311 266 104 120 chr1 103272194 103272234 -178921430 + L1ME3 LINE L1 5567 5606 -556 2193 137 77 10 chr1 103272234 103272635 -178921029 + MSTA LTR MaLR 1 428 0 311 266 104 120 chr1 103272635 103272910 -178920754 + L1ME3 LINE L1 5606 5877 -285 266 265 119 48 chr1 103272934 103273228 -178920436 - L1M4 LINE L1 -1780 4366 4052 303 262 131 16 chr1 103273292 103273483 -178920181 - L1M4 LINE L1 -2189 3957 3745 6342 83 15 16 chr1 103273677 103275237 -178918427 - SVA Other Other -760 1385 23 1015 177 11 11 chr1 103275377 103275552 -178918112 + FAM SINE Alu 1 175 0 438 263 83 0 chr1 103275621 103275754 -178917910 + L1MEd LINE L1 2669 2812 -3317 720 203 0 8 chr1 103275756 103275879 -178917785 + FLAM_C SINE Alu 2 123 -10 2171 129 0 7 chr1 103275981 103276291 -178917373 - AluSx SINE Alu -2 310 3 1925 163 0 3 chr1 103276320 103276615 -178917049 - AluJb SINE Alu -18 294 1 318 182 84 91 chr1 103276652 103276704 -178916960 + L1MEd LINE L1 2931 2982 -3147 2116 66 52 24 chr1 103276704 103276993 -178916671 + AluY SINE Alu 2 298 -13 318 182 84 91 chr1 103276993 103277094 -178916570 + L1MEd LINE L1 2982 3083 -3046 1808 145 133 48 chr1 103277094 103277494 -178916170 + Tigger2a DNA MER2_type 1 434 0 397 228 40 0 chr1 103277499 103277600 -178916064 + L1ME LINE L1 5524 5628 -538 25 31 0 0 chr1 103278287 103278319 -178915345 + GC_rich Low_complexity Low_complexity 1 32 0 413 18 0 18 chr1 103278781 103278836 -178914828 + (TG)n Simple_repeat Simple_repeat 1 54 0 207 0 0 0 chr1 103278836 103278859 -178914805 + (GA)n Simple_repeat Simple_repeat 2 24 0 287 206 20 128 chr1 103279514 103279616 -178914048 + MIR SINE MIR 167 257 -5 379 281 89 37 chr1 103279831 103279966 -178913698 + MIR3 SINE MIR 3 144 -64 1213 163 194 3 chr1 103280989 103281277 -178912387 - MSTD LTR MaLR -2 394 52 1737 197 11 0 chr1 103281280 103281564 -178912100 - AluJo SINE Alu -25 287 1 23 0 0 0 chr1 103281677 103281700 -178911964 + AT_rich Low_complexity Low_complexity 1 23 0 795 193 22 22 chr1 103282028 103282209 -178911455 - MLT1A1 LTR MaLR 0 365 185 256 95 95 0 chr1 103282224 103282266 -178911398 - MLT1A1 LTR MaLR -319 46 1 207 0 0 0 chr1 103282347 103282370 -178911294 + (T)n Simple_repeat Simple_repeat 1 23 0 2074 63 0 34 chr1 103282403 103282672 -178910992 + AluY SINE Alu 42 301 -10 2066 130 17 17 chr1 103282994 103283294 -178910370 - AluSx SINE Alu -12 300 1 312 228 0 138 chr1 103283913 103283960 -178909704 - MIR SINE MIR -1 261 209 1395 86 40 0 chr1 103283960 103284158 -178909506 - L1PA10 LINE L1 -3 6165 5960 312 228 0 138 chr1 103284158 103284233 -178909431 - MIR SINE MIR -53 209 156 245 271 17 0 chr1 103286817 103286876 -178906788 - L2 LINE L2 -1 3312 3253 879 259 21 17 chr1 103287204 103287443 -178906221 + MIR SINE MIR 23 262 0 268 379 142 8 chr1 103287557 103287818 -178905846 - L2 LINE L2 -556 2758 2463 2209 95 0 0 chr1 103287991 103288306 -178905358 - AluSq SINE Alu 0 315 1 1877 160 7 13 chr1 103288529 103288698 -178904966 - AluJb SINE Alu -8 304 136 2064 96 71 0 chr1 103288698 103288979 -178904685 - AluSp SINE Alu -12 301 1 1877 160 7 13 chr1 103288979 103289115 -178904549 - AluJb SINE Alu -176 136 1 191 259 103 0 chr1 103289863 103289921 -178903743 - L3 LINE CR1 -1110 467 404 2218 116 0 26 chr1 103290113 103290424 -178903240 + AluSp SINE Alu 1 303 -10 839 122 9 0 chr1 103290434 103290549 -178903115 + FLAM_C SINE Alu 1 116 -17 2115 153 0 3 chr1 103290797 103291110 -178902554 + AluJb SINE Alu 1 312 0 665 119 4 2 chr1 103291587 103291831 -178901833 + AluSq SINE Alu 3 303 -10 248 242 27 44 chr1 103291975 103292095 -178901569 - MLT1G LTR MaLR -3 566 432 1650 139 6 89 chr1 103293317 103293641 -178900023 - AluJo SINE Alu -15 297 1 254 349 0 8 chr1 103293986 103294115 -178899549 - L1MC4 LINE L1 -570 7472 7345 612 233 54 22 chr1 103294148 103294371 -178899293 - L1MC5 LINE L1 -728 7233 7004 408 266 87 22 chr1 103294402 103294586 -178899078 - L1MC4 LINE L1 -1031 7011 6816 1202 327 98 35 chr1 103295321 103296370 -178897294 - L2 LINE L2 0 3272 2150 1180 234 90 58 chr1 103296422 103296682 -178896982 + L1MEd LINE L1 710 960 -5412 2318 90 3 0 chr1 103296682 103296971 -178896693 + AluSx SINE Alu 13 302 -10 1180 234 90 58 chr1 103296971 103297342 -178896322 + L1MEd LINE L1 960 1361 -5011 386 291 90 32 chr1 103297419 103297740 -178895924 + L1MEd LINE L1 2221 2560 -3822 267 114 0 0 chr1 103298351 103298395 -178895269 + (GA)n Simple_repeat Simple_repeat 2 45 0 1152 264 82 28 chr1 103298779 103299009 -178894655 + L1MEd LINE L1 2698 2914 -3468 924 118 0 15 chr1 103299009 103299144 -178894520 - FLAM_C SINE Alu 0 133 1 1152 264 82 28 chr1 103299144 103299869 -178893795 + L1MEd LINE L1 2914 3704 -2678 2249 97 3 3 chr1 103299965 103300263 -178893401 - AluSx SINE Alu -14 298 1 2126 133 0 3 chr1 103300263 103300571 -178893093 - AluSx SINE Alu -5 307 1 1963 238 44 13 chr1 103300714 103301345 -178892319 - L1M4 LINE L1 -1155 4991 4341 987 35 0 0 chr1 103301393 103301508 -178892156 + AluY SINE Alu 192 306 -5 301 269 128 0 chr1 103302123 103302201 -178891463 + L2 LINE L2 3224 3311 -2 543 155 0 21 chr1 103302210 103302307 -178891357 + FRAM SINE Alu 70 164 -12 617 237 0 8 chr1 103302313 103302431 -178891233 + FLAM_C SINE Alu 1 117 -16 32 0 0 0 chr1 103302615 103302647 -178891017 + AT_rich Low_complexity Low_complexity 1 32 0 1885 115 52 0 chr1 103305259 103305567 -178888097 - AluSx SINE Alu 0 322 1 2122 103 3 32 chr1 103305820 103305989 -178887675 - AluSq SINE Alu -10 303 146 2429 71 0 0 chr1 103305989 103306283 -178887381 - AluY SINE Alu -17 294 1 2122 103 3 32 chr1 103306283 103306425 -178887239 - AluSq SINE Alu -167 146 1 29 70 0 0 chr1 103306808 103306865 -178886799 + AT_rich Low_complexity Low_complexity 1 57 0 1460 196 25 18 chr1 103306939 103307215 -178886449 + AluJo SINE Alu 27 304 -8 1273 236 15 56 chr1 103307660 103308050 -178885614 - MLT1A2 LTR MaLR 0 374 1 495 148 0 0 chr1 103308063 103308144 -178885520 - AluJ/FRAM SINE Alu -6 306 226 * 594 161 0 0 chr1 103308139 103308226 -178885438 + AluJo/FRAM SINE Alu 204 290 -22 22 0 0 54 chr1 103308226 103308245 -178885419 + AT_rich Low_complexity Low_complexity 1 19 -16 384 119 0 0 chr1 103308245 103308304 -178885360 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 54 chr1 103308304 103308321 -178885343 + AT_rich Low_complexity Low_complexity 19 35 0 2170 123 0 16 chr1 103308399 103308709 -178884955 - AluSx SINE Alu -7 305 1 2342 94 0 0 chr1 103309147 103309445 -178884219 + AluSx SINE Alu 1 298 -14 1265 188 0 5 chr1 103309507 103309715 -178883949 - AluJb SINE Alu -105 207 1 2526 54 0 0 chr1 103311394 103311691 -178881973 + AluY SINE Alu 1 297 -14 522 313 119 28 chr1 103311963 103312411 -178881253 + L2 LINE L2 2698 3206 -107 201 39 0 0 chr1 103312577 103312603 -178881061 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2294 91 17 0 chr1 103312603 103312892 -178880772 - AluSp SINE Alu -16 297 1 1495 113 14 0 chr1 103312895 103313107 -178880557 - AluSg/x SINE Alu -14 298 84 191 208 42 0 chr1 103313807 103313855 -178879809 + L2 LINE L2 3263 3312 -1 189 107 0 0 chr1 103314040 103314068 -178879596 + (T)n Simple_repeat Simple_repeat 1 28 0 256 360 116 45 chr1 103314267 103314401 -178879263 - L2 LINE L2 -45 3227 3104 599 256 124 17 chr1 103314401 103314635 -178879029 + MIR SINE MIR 4 262 0 256 360 116 45 chr1 103314635 103315242 -178878422 - L2 LINE L2 -168 3104 2424 1386 103 63 62 chr1 103315374 103315534 -178878130 - Tigger4(Zombi) DNA MER2_type 0 2731 2573 1892 183 59 16 chr1 103315534 103315976 -178877688 - MER65C LTR ERV1 0 461 1 1386 103 63 62 chr1 103315976 103316149 -178877515 - Tigger4(Zombi) DNA MER2_type -158 2573 1 24 0 0 0 chr1 103317147 103317171 -178876493 + AT_rich Low_complexity Low_complexity 1 24 0 2211 90 0 71 chr1 103317512 103317834 -178875830 + AluSc SINE Alu 1 299 -10 709 125 15 44 chr1 103317846 103317982 -178875682 + FLAM_C SINE Alu 2 133 0 24 32 0 0 chr1 103319004 103319035 -178874629 + AT_rich Low_complexity Low_complexity 1 31 0 347 188 31 0 chr1 103319489 103319585 -178874079 + L1ME4a LINE L1 6021 6119 -2 23 0 0 0 chr1 103321112 103321135 -178872529 + AT_rich Low_complexity Low_complexity 1 23 0 2213 108 0 3 chr1 103321185 103321517 -178872147 - AluSq SINE Alu 0 313 1 27 73 0 0 chr1 103321607 103321662 -178872002 + AT_rich Low_complexity Low_complexity 1 55 0 2319 101 0 3 chr1 103321672 103321979 -178871685 - AluSx SINE Alu -6 306 1 2940 164 43 14 chr1 103322890 103323314 -178870350 - Charlie1a DNA MER1_type -1307 1454 1044 2395 87 0 0 chr1 103323314 103323623 -178870041 - AluSg SINE Alu -1 309 1 2940 164 43 14 chr1 103323623 103324102 -178869562 - Charlie1a DNA MER1_type -1717 1044 472 993 146 58 29 chr1 103324104 103324275 -178869389 + AluJb SINE Alu 121 296 -16 1834 193 21 74 chr1 103324275 103324761 -178868903 - Charlie1a DNA MER1_type -991 464 5 1462 170 57 53 chr1 103325564 103325864 -178867800 - AluJo SINE Alu -11 301 1 216 111 0 0 chr1 103325880 103325916 -178867748 + (TA)n Simple_repeat Simple_repeat 1 36 0 799 286 179 24 chr1 103325917 103326425 -178867239 + L2 LINE L2 2724 3313 0 2348 103 3 3 chr1 103326678 103326990 -178866674 + AluSx SINE Alu 1 312 0 28 48 0 0 chr1 103327302 103327344 -178866320 + AT_rich Low_complexity Low_complexity 1 42 0 2027 128 47 0 chr1 103327697 103327993 -178865671 - AluJb SINE Alu -1 311 2 926 230 94 47 chr1 103328048 103328611 -178865053 - L1MC5 LINE L1 -202 7759 7260 612 233 54 22 chr1 103328644 103328867 -178864797 - L1MC5 LINE L1 -728 7233 7004 408 266 87 22 chr1 103328898 103329082 -178864582 - L1MC4 LINE L1 -1031 7011 6816 1222 326 98 35 chr1 103329817 103330866 -178862798 - L2 LINE L2 0 3272 2150 1180 234 90 58 chr1 103330918 103331178 -178862486 + L1ME4a LINE L1 710 960 -5412 2318 90 3 0 chr1 103331178 103331467 -178862197 + AluSx SINE Alu 13 302 -10 1180 234 90 58 chr1 103331467 103331838 -178861826 + L1ME4a LINE L1 960 1361 -5011 386 291 90 32 chr1 103331915 103332236 -178861428 + L1ME4a LINE L1 2221 2560 -3822 267 114 0 0 chr1 103332847 103332891 -178860773 + (GA)n Simple_repeat Simple_repeat 2 45 0 1260 266 104 48 chr1 103333275 103333505 -178860159 + L1ME4a LINE L1 2698 2914 -3468 924 118 0 15 chr1 103333505 103333640 -178860024 - FLAM_C SINE Alu 0 133 1 1260 266 104 48 chr1 103333640 103334461 -178859203 + L1ME4a LINE L1 2914 3687 -2695 2261 100 0 7 chr1 103334461 103334760 -178858904 - AluSx SINE Alu -15 297 1 1260 266 104 48 chr1 103334760 103335017 -178858647 + L1ME4a LINE L1 3687 3928 -2454 2224 114 3 0 chr1 103335017 103335316 -178858348 + AluSp SINE Alu 1 300 -13 1260 266 104 48 chr1 103335316 103335446 -178858218 + L1ME4a LINE L1 3928 4219 -2163 180 0 0 0 chr1 103335537 103335557 -178858107 + (TAA)n Simple_repeat Simple_repeat 2 21 0 339 267 78 49 chr1 103335921 103336010 -178857654 + L1ME4a LINE L1 4241 4326 -2056 2055 128 3 3 chr1 103336010 103336308 -178857356 + AluSx SINE Alu 1 298 -14 339 267 78 49 chr1 103336308 103336519 -178857145 + L1ME4a LINE L1 4326 4555 -1827 691 185 73 20 chr1 103336715 103336866 -178856798 - FRAM SINE Alu -14 162 4 1340 157 28 120 chr1 103336986 103337310 -178856354 + AluJo SINE Alu 1 294 -18 35 0 0 0 chr1 103337313 103337348 -178856316 + AT_rich Low_complexity Low_complexity 1 35 0 280 275 114 8 chr1 103337359 103337490 -178856174 + L1ME4a LINE L1 4797 4941 -1441 688 117 0 0 chr1 103337493 103337587 -178856077 + AluS SINE Alu 1 94 -218 2187 96 24 0 chr1 103337739 103338031 -178855633 - AluSx SINE Alu -13 299 1 570 275 73 25 chr1 103338293 103338620 -178855044 + L1ME4a LINE L1 5775 6117 -240 23 54 0 0 chr1 103338726 103338763 -178854901 + AT_rich Low_complexity Low_complexity 1 37 0 828 129 0 0 chr1 103338782 103338898 -178854766 + FLAM_C SINE Alu 1 116 -17 2309 107 0 3 chr1 103339160 103339470 -178854194 + AluSg SINE Alu 1 309 -1 682 202 119 37 chr1 103339615 103339833 -178853831 - MER106A DNA MER1_type 0 236 1 1682 167 0 28 chr1 103340713 103341000 -178852664 + AluJb SINE Alu 1 279 -33 510 187 49 32 chr1 103341094 103341217 -178852447 + L2 LINE L2 3189 3313 0 2027 158 30 0 chr1 103341313 103341617 -178852047 + AluSq SINE Alu 1 313 0 254 293 177 20 chr1 103341963 103342110 -178851554 - MIR SINE MIR -80 182 13 1783 174 23 0 chr1 103345018 103345317 -178848347 + AluJb SINE Alu 1 306 -6 2098 129 3 3 chr1 103345433 103345743 -178847921 - AluSp SINE Alu -3 310 1 267 152 114 13 chr1 103345848 103345927 -178847737 - MER69 DNA AcHobo -93 2433 2347 734 296 120 9 chr1 103345932 103346495 -178847169 - MER69 DNA AcHobo -1770 756 13 248 278 0 28 chr1 103346502 103346574 -178847090 + GA-rich Low_complexity Low_complexity 3 72 0 1016 183 0 0 chr1 103346921 103347085 -178846579 + FRAM SINE Alu 1 161 -15 28 0 0 0 chr1 103347127 103347155 -178846509 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr1 103347190 103347241 -178846423 + AT_rich Low_complexity Low_complexity 1 51 0 2494 66 0 0 chr1 103347263 103347564 -178846100 + AluSg SINE Alu 1 301 -9 304 286 16 79 chr1 103347569 103347695 -178845969 - L1ME3A LINE L1 -88 6082 5965 1865 166 23 3 chr1 103347758 103348102 -178845562 + MLT2D LTR ERVL 2 352 -62 354 100 0 0 chr1 103348117 103348177 -178845487 + (CA)n Simple_repeat Simple_repeat 1 60 0 246 61 0 0 chr1 103348177 103348210 -178845454 - MLT2C2 LTR ERVL -11 453 421 489 0 70 0 chr1 103348223 103348294 -178845370 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 873 222 78 43 chr1 103348405 103348775 -178844889 - L1MC5 LINE L1 -435 7526 7144 341 237 140 0 chr1 103349076 103349169 -178844495 - MIR SINE MIR -51 211 106 228 329 96 0 chr1 103349227 103349300 -178844364 - MIR SINE MIR -171 91 12 1875 170 0 3 chr1 103349477 103349783 -178843881 - AluJb SINE Alu -7 305 1 368 280 89 54 chr1 103349809 103350417 -178843247 + L1M4 LINE L1 4744 5372 -774 280 173 0 29 chr1 103351429 103351533 -178842131 + (CAT)n Simple_repeat Simple_repeat 3 103 0 276 179 0 64 chr1 103352336 103352414 -178841250 + L1MC4a LINE L1 5859 5931 -1877 2077 133 3 3 chr1 103352572 103352873 -178840791 - AluSq SINE Alu -11 302 2 188 33 0 33 chr1 103352894 103352924 -178840740 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 660 209 0 0 chr1 103352935 103353040 -178840624 + FLAM_A SINE Alu 1 105 -37 888 104 16 0 chr1 103353083 103353208 -178840456 - AluSg/x SINE Alu -24 286 160 1687 167 14 17 chr1 103353234 103353396 -178840268 - AluJo SINE Alu -19 293 131 396 0 0 0 chr1 103353396 103353440 -178840224 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1687 167 14 17 chr1 103353440 103353571 -178840093 - AluJo SINE Alu -181 131 1 917 161 21 38 chr1 103353930 103354116 -178839548 - AluJo SINE Alu -8 304 122 1956 127 22 38 chr1 103354173 103354488 -178839176 - AluSx SINE Alu -2 310 1 3083 123 113 38 chr1 103354673 103355001 -178838663 - L1MA9 LINE L1 -40 6272 5970 2264 84 7 7 chr1 103355001 103355298 -178838366 - AluY SINE Alu -2 309 13 3083 123 113 38 chr1 103355298 103355659 -178838005 - L1MA9 LINE L1 -342 5970 5531 728 243 28 6 chr1 103355764 103355941 -178837723 + MIR SINE MIR 82 262 0 941 88 0 22 chr1 103356164 103356300 -178837364 - AluJo SINE Alu -169 133 1 1007 113 7 0 chr1 103356362 103356504 -178837160 - AluJb SINE Alu -8 304 162 381 186 65 82 chr1 103358238 103358385 -178835279 - MER5A DNA MER1_type -40 138 1 2456 58 0 0 chr1 103358430 103358725 -178834939 - AluSx SINE Alu -17 295 1 243 301 82 75 chr1 103359155 103359301 -178834363 - L2 LINE L2 0 3313 3167 272 287 55 73 chr1 103359326 103359490 -178834174 - L2 LINE L2 -222 3050 2890 354 280 88 0 chr1 103359710 103359835 -178833829 - MIR SINE MIR -7 255 120 1089 130 7 0 chr1 103359850 103360004 -178833660 + AluSg/x SINE Alu 143 297 -13 227 233 0 0 chr1 103360004 103360047 -178833617 - MIR SINE MIR -189 73 31 * 242 197 242 15 chr1 103360042 103360108 -178833556 - MIR SINE MIR -147 115 35 205 299 91 0 chr1 103360570 103360647 -178833017 - L2 LINE L2 -647 2667 2584 21 36 0 0 chr1 103361100 103361128 -178832536 + AT_rich Low_complexity Low_complexity 1 28 0 1660 187 30 6 chr1 103361140 103361477 -178832187 + LTR32 LTR ERVL 8 352 -119 782 173 20 7 chr1 103361484 103361634 -178832030 + LTR32 LTR ERVL 317 468 -3 387 319 142 0 chr1 103361954 103362067 -178831597 + L2 LINE L2 3133 3261 -11 311 64 21 0 chr1 103362107 103362154 -178831510 + MSTD LTR MaLR 1 48 -380 1750 104 0 0 chr1 103362161 103362381 -178831283 + AluSx SINE Alu 1 220 -92 439 115 0 0 chr1 103362381 103362442 -178831222 + AluSc SINE Alu 150 210 -99 1043 121 0 0 chr1 103362442 103362583 -178831081 + AluSg/x SINE Alu 142 282 -28 414 178 14 0 chr1 103362598 103362671 -178830993 + AluJb SINE Alu 1 74 -238 3634 106 49 29 chr1 103362671 103363265 -178830399 - LTR14B LTR ERVK 0 608 3 1462 170 0 0 chr1 103363269 103363498 -178830166 + AluJb SINE Alu 70 298 -14 1121 198 188 7 chr1 103363499 103363797 -178829867 + MSTD LTR MaLR 45 396 0 262 246 156 8 chr1 103363825 103363947 -178829717 + MLT1L LTR MaLR 441 580 -35 245 255 7 134 chr1 103364427 103364576 -178829088 - L2 LINE L2 -86 3186 3057 26 30 0 0 chr1 103365147 103365180 -178828484 + AT_rich Low_complexity Low_complexity 1 33 0 388 189 30 3 chr1 103366063 103366225 -178827439 - MER20 DNA MER1_type 0 219 1 2150 159 19 16 chr1 103366320 103366684 -178826980 - MLT1A1 LTR MaLR 0 365 1 2410 173 43 36 chr1 103366818 103367499 -178826165 - L1MB8 LINE L1 -345 5833 5158 2128 129 0 7 chr1 103367499 103367794 -178825870 + AluSx SINE Alu 1 293 -19 2410 173 43 36 chr1 103367794 103367900 -178825764 - L1MB8 LINE L1 -1020 5158 5054 2091 113 106 28 chr1 103367902 103368299 -178825365 + MSTA LTR MaLR 1 428 0 261 83 0 0 chr1 103368302 103368338 -178825326 + (TG)n Simple_repeat Simple_repeat 2 37 0 909 42 34 0 chr1 103368388 103368506 -178825158 - AluY SINE Alu -14 297 176 363 178 167 11 chr1 103368507 103368602 -178825062 - FLAM_A SINE Alu -43 90 2 550 237 31 52 chr1 103368618 103368812 -178824852 - L1MB8 LINE L1 -1112 5034 4845 1283 178 50 58 chr1 103368813 103368971 -178824693 + MLT1A2 LTR MaLR 1 159 -215 1601 178 30 7 chr1 103368971 103369269 -178824395 + AluJb SINE Alu 1 305 -7 1283 178 50 58 chr1 103369269 103369469 -178824195 + MLT1A2 LTR MaLR 159 356 -18 298 221 0 48 chr1 103369472 103369576 -178824088 - L1MB8 LINE L1 -1288 4858 4760 2337 105 3 3 chr1 103370039 103370343 -178823321 - AluSp SINE Alu -9 304 1 595 211 145 18 chr1 103370424 103370590 -178823074 + MIR SINE MIR 61 247 -15 232 221 139 81 chr1 103371075 103371161 -178822503 + L2 LINE L2 3196 3286 -27 456 245 0 47 chr1 103371745 103371851 -178821813 + L2 LINE L2 376 476 -2838 1885 231 25 42 chr1 103371863 103372386 -178821278 + MER74A LTR ERVL 42 555 -3 3537 249 103 36 chr1 103372404 103372826 -178820838 + L2 LINE L2 504 896 -2418 1924 151 10 0 chr1 103372826 103373118 -178820546 - AluSx SINE Alu -15 297 3 3537 249 103 36 chr1 103373118 103373398 -178820266 + L2 LINE L2 896 1156 -2158 1775 188 45 0 chr1 103373398 103373690 -178819974 - AluJo SINE Alu -7 305 1 3537 249 103 36 chr1 103373690 103374233 -178819431 + L2 LINE L2 1156 1834 -1480 1796 176 38 5 chr1 103374235 103374604 -178819060 - L1MB7 LINE L1 -16 6168 5788 2429 214 49 4 chr1 103374609 103375137 -178818527 - MER68 LTR ERV1 -4 558 7 6702 204 70 19 chr1 103375144 103377442 -178816222 - L1MB7 LINE L1 -393 5791 3379 2183 92 0 17 chr1 103377445 103377762 -178815902 - AluSg SINE Alu 0 310 1 1814 92 18 11 chr1 103377781 103378053 -178815611 - L1PB1 LINE L1 0 6151 5878 1956 170 3 3 chr1 103378539 103378851 -178814813 - AluJo SINE Alu 0 312 1 2039 142 16 7 chr1 103378863 103379172 -178814492 - AluSx SINE Alu 0 312 1 25 0 0 0 chr1 103379292 103379317 -178814347 + AT_rich Low_complexity Low_complexity 1 25 0 403 299 130 11 chr1 103380296 103380480 -178813184 - LTR40a LTR ERVL -77 442 237 417 308 29 17 chr1 103381220 103381392 -178812272 - MIR SINE MIR -56 206 33 426 292 146 4 chr1 103381477 103381710 -178811954 + L2 LINE L2 1851 2116 -1198 2246 95 0 3 chr1 103381791 103382085 -178811579 - AluY SINE Alu -18 293 1 1819 161 3 19 chr1 103382090 103382406 -178811258 - AluJb SINE Alu -1 311 1 884 244 111 13 chr1 103382535 103382905 -178810759 - MER57A LTR ERV1 0 403 41 610 327 20 20 chr1 103382927 103383233 -178810431 - MER57-int LTR ERV1 -389 7148 6843 2514 84 0 3 chr1 103383233 103383544 -178810120 + AluY SINE Alu 2 311 0 1253 167 14 27 chr1 103383727 103383949 -178809715 + AluJo SINE Alu 76 294 -18 22 80 0 0 chr1 103384042 103384092 -178809572 + AT_rich Low_complexity Low_complexity 1 50 0 1995 151 51 0 chr1 103384181 103384512 -178809152 + MER7A DNA MER2_type 1 346 0 24 0 0 0 chr1 103386139 103386163 -178807501 + AT_rich Low_complexity Low_complexity 1 24 0 724 242 16 32 chr1 103387090 103387276 -178806388 + MIR SINE MIR 7 189 -73 1920 68 0 4 chr1 103387463 103387700 -178805964 - AluY SINE Alu -75 236 1 21 36 0 0 chr1 103387711 103387739 -178805925 + AT_rich Low_complexity Low_complexity 1 28 0 2111 134 0 3 chr1 103387851 103388150 -178805514 - AluSx SINE Alu -14 298 1 718 250 58 16 chr1 103388441 103388629 -178805035 + MIR SINE MIR 66 261 -1 1747 168 29 4 chr1 103388988 103389268 -178804396 + AluJo SINE Alu 4 290 -22 804 318 42 33 chr1 103390168 103390588 -178803076 - LTR16B LTR ERVL -7 457 31 2388 87 0 0 chr1 103390588 103390887 -178802777 + AluY SINE Alu 1 299 -12 804 318 42 33 chr1 103390887 103390919 -178802745 - LTR16B LTR ERVL -433 31 1 22 35 0 0 chr1 103391270 103391299 -178802365 + AT_rich Low_complexity Low_complexity 1 29 0 3241 218 51 11 chr1 103392730 103393709 -178799955 - L1MEc LINE L1 -3019 3196 2179 1578 186 17 7 chr1 103393714 103394005 -178799659 - AluJo SINE Alu -18 294 1 989 301 84 32 chr1 103394008 103394749 -178798915 - L1MEc LINE L1 -5468 928 150 3687 180 56 38 chr1 103394859 103395749 -178797915 - L1MC3 LINE L1 -21 7764 6855 237 33 0 0 chr1 103395749 103395779 -178797885 + (TG)n Simple_repeat Simple_repeat 2 31 0 3687 180 56 38 chr1 103395779 103395812 -178797852 - L1MC3 LINE L1 -930 6855 6824 4428 130 66 26 chr1 103395818 103396133 -178797531 - Tigger3b DNA MER2_type -2067 961 660 1905 186 0 0 chr1 103396133 103396445 -178797219 - AluJo SINE Alu 0 312 1 4428 130 66 26 chr1 103396445 103396475 -178797189 - Tigger3b DNA MER2_type -2368 660 633 1859 73 147 7 chr1 103396475 103396747 -178796917 - AluY SINE Alu -1 310 1 2155 106 33 3 chr1 103396748 103397049 -178796615 - AluSx SINE Alu -2 310 1 4428 130 66 26 chr1 103397049 103397624 -178796040 - Tigger3b DNA MER2_type -2394 634 1 1697 138 0 8 chr1 103397675 103397922 -178795742 - AluSx SINE Alu -67 245 1 1342 243 15 32 chr1 103397933 103398402 -178795262 - L1M4 LINE L1 -2189 3957 3497 512 278 26 5 chr1 103398430 103398624 -178795040 - L1ME1 LINE L1 -7 6159 5962 402 92 8 133 chr1 103398621 103398694 -178794970 - L1M LINE L1 -955 5389 5335 * 852 167 0 0 chr1 103398694 103398826 -178794838 - FLAM_A SINE Alu 0 133 2 402 92 8 133 chr1 103398826 103398872 -178794792 - L1M LINE L1 -1009 5335 5285 * 996 185 39 8 chr1 103398861 103399115 -178794549 - L1ME1 LINE L1 -187 5977 5716 2445 76 0 0 chr1 103399123 103399413 -178794251 - AluSc SINE Alu -19 290 1 2126 133 0 3 chr1 103399413 103399721 -178793943 - AluSx SINE Alu -5 307 1 1963 238 44 13 chr1 103399864 103400495 -178793169 - L1ME1 LINE L1 -1155 4991 4341 994 35 0 0 chr1 103400543 103400659 -178793005 + AluY SINE Alu 192 307 -4 301 269 128 0 chr1 103401274 103401352 -178792312 + L2 LINE L2 3224 3311 -2 543 155 0 21 chr1 103401361 103401458 -178792206 + FRAM SINE Alu 70 164 -12 617 237 0 8 chr1 103401464 103401582 -178792082 + FLAM_C SINE Alu 1 117 -16 32 0 0 0 chr1 103401766 103401798 -178791866 + AT_rich Low_complexity Low_complexity 1 32 0 1885 115 52 0 chr1 103404412 103404716 -178788948 - AluSx SINE Alu 0 318 1 2295 83 0 35 chr1 103404969 103405139 -178788525 - AluSq SINE Alu -10 303 147 2429 71 0 0 chr1 103405139 103405433 -178788231 - AluY SINE Alu -17 294 1 2295 83 0 35 chr1 103405433 103405576 -178788088 - AluSq SINE Alu -166 147 1 29 70 0 0 chr1 103405959 103406016 -178787648 + AT_rich Low_complexity Low_complexity 1 57 0 1460 196 25 18 chr1 103406090 103406366 -178787298 + AluJo SINE Alu 27 304 -8 1273 236 15 56 chr1 103406811 103407201 -178786463 - MLT1A2 LTR MaLR 0 374 1 495 148 0 0 chr1 103407214 103407295 -178786369 - AluJ/FRAM SINE Alu -6 306 226 * 617 156 0 0 chr1 103407290 103407380 -178786284 + AluJo/FRAM SINE Alu 204 293 -19 384 119 0 0 chr1 103407395 103407454 -178786210 + (CA)n Simple_repeat Simple_repeat 2 60 0 2170 123 0 16 chr1 103407549 103407859 -178785805 - AluSx SINE Alu -7 305 1 1752 159 42 11 chr1 103408369 103408652 -178785012 + AluJo SINE Alu 1 292 -20 333 68 0 0 chr1 103408654 103408698 -178784966 + (CA)n Simple_repeat Simple_repeat 2 45 0 2016 124 3 29 chr1 103408794 103409108 -178784556 - AluSx SINE Alu -6 306 1 2395 75 0 3 chr1 103409543 103409837 -178783827 + AluSg SINE Alu 1 293 -17 3732 149 11 3 chr1 103410147 103410796 -178782868 - L1MC1 LINE L1 -21 6312 5659 301 104 0 0 chr1 103411811 103411859 -178781805 - MLT2F LTR ERVL -3 660 613 3423 218 37 25 chr1 103411860 103413353 -178780311 + ERVL-F LTR ERVL 4148 5748 -16 2134 221 99 9 chr1 103413354 103413911 -178779753 + MLT2F LTR ERVL 3 609 -54 4275 164 41 9 chr1 103413957 103414768 -178778896 - MER6 DNA MER2_type -27 838 2 2151 117 7 3 chr1 103414914 103415213 -178778451 + AluSq SINE Alu 1 300 -13 2266 121 23 28 chr1 103415394 103415784 -178777880 - L1PB2 LINE L1 -3 6148 5761 308 313 62 0 chr1 103415854 103415966 -178777698 - MIR SINE MIR -95 167 49 311 188 58 14 chr1 103416146 103416215 -178777449 + L2 LINE L2 3193 3264 -8 11028 194 53 56 chr1 103417214 103417713 -178775951 - L1MB1 LINE L1 -1 5991 5492 2666 139 14 9 chr1 103417713 103418137 -178775527 + MSTB LTR MaLR 1 426 0 11028 194 53 56 chr1 103418137 103419292 -178774372 - L1MB1 LINE L1 -500 5492 4335 1130 141 0 0 chr1 103419292 103419448 -178774216 - FRAM SINE Alu -21 155 1 11028 194 53 56 chr1 103419448 103421337 -178772327 - L1MB1 LINE L1 -1657 4335 2442 189 74 0 0 chr1 103421337 103421364 -178772300 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1439 196 21 32 chr1 103421366 103421646 -178772018 - AluJo SINE Alu -31 281 5 11028 194 53 56 chr1 103421646 103422480 -178771184 - L1MB1 LINE L1 -3551 2441 1606 838 158 0 20 chr1 103422480 103422626 -178771038 + L1MC1 LINE L1 6178 6320 -13 1635 174 75 0 chr1 103422634 103422899 -178770765 - AluJb SINE Alu -27 285 1 11028 194 53 56 chr1 103422899 103423006 -178770658 - L1MB1 LINE L1 -4393 1599 1493 1943 164 0 13 chr1 103423006 103423317 -178770347 - AluJb SINE Alu -2 310 4 11028 194 53 56 chr1 103423317 103425098 -178768566 - L1MB1 LINE L1 -4499 1493 2 317 343 99 0 chr1 103425340 103425623 -178768041 + L1MC4a LINE L1 5254 5564 -2244 355 209 45 18 chr1 103425695 103425805 -178767859 + MER112 DNA MER1_type 49 161 -99 360 343 39 11 chr1 103426159 103426337 -178767327 + LTR16C LTR ERVL 151 333 -158 363 265 204 8 chr1 103426349 103426481 -178767183 - MER5A DNA MER1_type -1 188 31 293 269 54 40 chr1 103426495 103426644 -178767020 + LTR16C LTR ERVL 339 489 -2 651 266 93 49 chr1 103426653 103426916 -178766748 + L1MC4a LINE L1 5615 5902 -1906 2627 55 0 3 chr1 103426916 103427227 -178766437 + AluY SINE Alu 1 310 -1 651 266 93 49 chr1 103427227 103427351 -178766313 + L1MC4a LINE L1 5902 6019 -1789 343 159 0 0 chr1 103427455 103427518 -178766146 - LTR30 LTR ERV1 -108 614 552 849 163 0 0 chr1 103428048 103428171 -178765493 + FLAM_C SINE Alu 1 123 -20 1982 139 0 4 chr1 103428179 103428459 -178765205 + AluSx SINE Alu 1 279 -33 353 153 0 0 chr1 103428459 103428518 -178765146 + AluJ/FRAM SINE Alu 221 279 -23 377 307 177 22 chr1 103428869 103429237 -178764427 - L2 LINE L2 -582 2732 2308 1757 118 69 0 chr1 103429346 103429608 -178764056 - AluJb SINE Alu -9 303 24 1807 139 10 26 chr1 103429742 103430045 -178763619 - AluJb SINE Alu -14 298 1 337 229 29 0 chr1 103430105 103430162 -178763502 + 5S rRNA rRNA 1 59 -62 225 171 0 0 chr1 103430162 103430197 -178763467 + Alu SINE Alu 1 35 -266 * 255 212 0 24 chr1 103430191 103430252 -178763412 - AluYb8 SINE Alu -123 185 135 272 323 93 31 chr1 103430312 103430538 -178763126 - L2 LINE L2 -1320 1994 1755 193 217 22 0 chr1 103430957 103431003 -178762661 - L2 LINE L2 -957 2357 2311 1573 150 41 24 chr1 103431421 103431715 -178761949 - AluJb SINE Alu -13 299 1 198 167 0 0 chr1 103432060 103432096 -178761568 + (TA)n Simple_repeat Simple_repeat 2 37 0 581 253 71 19 chr1 103432109 103432347 -178761317 + MER57B LTR ERV1 1 251 -159 462 255 11 0 chr1 103432347 103432441 -178761223 + MER2 DNA MER2_type 1 95 -250 574 138 11 0 chr1 103432442 103432529 -178761135 + AluSx SINE Alu 1 88 -224 3500 174 90 28 chr1 103432529 103433307 -178760357 - LTR1B LTR ERV1 0 826 1 1595 92 0 35 chr1 103433308 103433535 -178760129 + AluSx SINE Alu 84 302 -8 1958 139 0 4 chr1 103433535 103433815 -178759849 + AluSx SINE Alu 1 279 -33 1265 126 49 0 chr1 103433834 103434057 -178759607 + L1 LINE L1 4416 4649 -1497 69 11 0 11 chr1 103434057 103434086 -178759578 + AT_rich Low_complexity Low_complexity 1 29 -57 1916 130 14 3 chr1 103434086 103434371 -178759293 - AluSx SINE Alu -24 288 1 69 11 0 11 chr1 103434371 103434428 -178759236 + AT_rich Low_complexity Low_complexity 29 86 0 733 104 32 8 chr1 103434428 103434553 -178759111 + MER2 DNA MER2_type 83 210 -135 22 0 0 0 chr1 103434591 103434613 -178759051 + AT_rich Low_complexity Low_complexity 1 22 0 355 125 18 0 chr1 103434613 103434669 -178758995 + AluJ/FLAM SINE Alu 1 57 -245 809 225 0 48 chr1 103434773 103434960 -178758704 - AluJo SINE Alu -130 182 5 1454 250 47 19 chr1 103434990 103435779 -178757885 - L1 LINE L1 -3594 2788 1969 843 158 0 20 chr1 103435795 103435941 -178757723 + L1MC1 LINE L1 6178 6320 -13 1689 109 109 0 chr1 103435949 103436205 -178757459 - AluY SINE Alu -27 284 1 1102 169 6 0 chr1 103436220 103436392 -178757272 + FRAM SINE Alu 1 165 -11 464 291 24 8 chr1 103436493 103436620 -178757044 - L2 LINE L2 -10 3262 3134 567 202 167 52 chr1 103436834 103437194 -178756470 - MLT1H LTR MaLR -2 547 3 2274 127 0 0 chr1 103437665 103437973 -178755691 - AluSx SINE Alu 0 312 5 656 58 0 0 chr1 103438839 103438926 -178754738 + L1PA5 LINE L1 6068 6154 0 23 33 0 0 chr1 103439387 103439417 -178754247 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 103439686 103439720 -178753944 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr1 103440824 103440852 -178752812 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr1 103442079 103442120 -178751544 + AT_rich Low_complexity Low_complexity 1 41 0 2222 108 0 0 chr1 103443061 103443357 -178750307 + AluSq SINE Alu 1 296 -17 776 171 65 106 chr1 103443451 103443696 -178749968 + L1MB2 LINE L1 5919 6153 -18 2313 85 3 0 chr1 103444183 103444477 -178749187 - AluSp SINE Alu -18 295 1 434 239 270 0 chr1 103444942 103445101 -178748563 + MIR SINE MIR 50 251 -11 180 267 89 0 chr1 103445069 103445114 -178748550 + L2 LINE L2 3265 3313 0 * 508 206 86 46 chr1 103445271 103445446 -178748218 + L1MC5 LINE L1 7724 7905 -56 1417 167 24 12 chr1 103445446 103445697 -178747967 - AluJb SINE Alu -15 297 44 225 325 26 0 chr1 103446008 103446085 -178747579 - MIR SINE MIR -81 127 49 2549 70 0 0 chr1 103446454 103446755 -178746909 + AluSc SINE Alu 4 304 -5 2142 131 3 3 chr1 103446765 103447077 -178746587 + AluSx SINE Alu 1 312 0 26 0 0 0 chr1 103447357 103447383 -178746281 + AT_rich Low_complexity Low_complexity 1 26 0 505 361 29 5 chr1 103447543 103447751 -178745913 + MIR SINE MIR 49 261 -1 186 43 0 0 chr1 103448430 103448453 -178745211 + (CAG)n Simple_repeat Simple_repeat 1 23 0 29 90 0 0 chr1 103449223 103449301 -178744363 + AT_rich Low_complexity Low_complexity 1 78 0 597 186 200 0 chr1 103449895 103450040 -178743624 - FRAM SINE Alu -2 174 1 2274 111 0 0 chr1 103450216 103450514 -178743150 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr1 103451312 103451346 -178742318 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr1 103456911 103456935 -178736729 + AT_rich Low_complexity Low_complexity 1 24 0 455 288 40 0 chr1 103457013 103457138 -178736526 - MIR3 SINE MIR -21 187 58 379 276 112 15 chr1 103457635 103457769 -178735895 - MIR SINE MIR 0 262 116 2205 104 7 3 chr1 103458367 103458666 -178734998 + AluSc SINE Alu 1 300 -9 1808 147 17 37 chr1 103459099 103459398 -178734266 + AluJo SINE Alu 1 293 -19 230 207 195 35 chr1 103459414 103459501 -178734163 - L2 LINE L2 -3 3269 3169 1039 148 0 0 chr1 103459615 103459770 -178733894 + AluSg/x SINE Alu 137 291 -19 180 0 0 0 chr1 103459770 103459790 -178733874 + (TA)n Simple_repeat Simple_repeat 2 21 0 310 254 0 0 chr1 103459790 103459845 -178733819 + MER2 DNA MER2_type 291 345 0 * 612 227 52 0 chr1 103459845 103459996 -178733668 + MER57A LTR ERV1 241 399 -4 588 188 103 0 chr1 103460212 103460329 -178733335 - AluSq/x SINE Alu -180 133 5 2144 113 20 3 chr1 103460347 103460649 -178733015 - AluSg SINE Alu -3 307 1 307 200 0 0 chr1 103461182 103461237 -178732427 + Alu SINE Alu 243 297 -5 1959 143 3 3 chr1 103461573 103461881 -178731783 + AluSx SINE Alu 1 308 -4 422 296 131 43 chr1 103461942 103462551 -178731113 + L1ME4a LINE L1 5255 5917 -204 1961 164 6 0 chr1 103462570 103462894 -178730770 + MLT2C1 LTR ERVL 10 335 -62 1930 122 28 7 chr1 103462895 103463182 -178730482 - AluJb SINE Alu -19 293 1 915 94 31 0 chr1 103463186 103463346 -178730318 + CT-rich Low_complexity Low_complexity 2 166 0 1210 116 6 23 chr1 103463346 103463518 -178730146 - AluSg/x SINE Alu -32 280 112 579 125 117 17 chr1 103463662 103463782 -178729882 - AluJb SINE Alu -180 132 1 877 287 81 16 chr1 103463804 103464125 -178729539 + MLT1J LTR MaLR 168 509 -2 785 209 0 0 chr1 103464433 103464581 -178729083 - FRAM SINE Alu -31 145 1 1616 243 97 65 chr1 103464632 103464677 -178728987 - HAL1 LINE L1 0 2507 2465 1894 132 11 0 chr1 103464677 103464982 -178728682 + AluSx SINE Alu 1 308 0 1616 243 97 65 chr1 103464982 103465777 -178727887 - HAL1 LINE L1 -42 2465 1637 773 179 0 8 chr1 103465777 103465911 -178727753 + FLAM_C SINE Alu 1 133 0 1744 192 97 61 chr1 103466024 103466664 -178727000 - HAL1 LINE L1 -1054 1453 791 269 250 42 28 chr1 103468843 103468915 -178724749 - LTR52 LTR ERVL -12 409 337 937 201 76 9 chr1 103468941 103469165 -178724499 - LTR52 LTR ERVL -182 239 1 22 70 0 0 chr1 103469373 103469416 -178724248 + AT_rich Low_complexity Low_complexity 1 43 0 12040 159 42 16 chr1 103469418 103471535 -178722129 - L1M2 LINE L1 -743 5403 3341 1786 162 3 33 chr1 103471535 103471837 -178721827 - AluJo SINE Alu -19 293 1 12040 159 42 16 chr1 103471837 103471947 -178721717 - L1M2 LINE L1 -2805 3341 3235 2251 125 0 0 chr1 103471947 103472259 -178721405 - AluSx SINE Alu 0 312 1 12040 159 42 16 chr1 103472259 103472501 -178721163 - L1M2 LINE L1 -2911 3235 2935 274 298 45 65 chr1 103473265 103473617 -178720047 - HAL1b LINE L1 -859 489 145 2277 106 3 3 chr1 103475092 103475394 -178718270 - AluSx SINE Alu -10 302 1 2012 146 0 0 chr1 103475398 103475706 -178717958 - AluSx SINE Alu 0 308 1 453 36 0 0 chr1 103475959 103476014 -178717650 + (TG)n Simple_repeat Simple_repeat 2 56 0 650 215 5 97 chr1 103476935 103477130 -178716534 - L2 LINE L2 -18 3295 3119 1087 163 92 0 chr1 103477139 103477323 -178716341 + AluJb SINE Alu 87 287 -25 34 24 0 0 chr1 103477365 103477406 -178716258 + AT_rich Low_complexity Low_complexity 1 41 0 2149 131 0 0 chr1 103477410 103477700 -178715964 - AluSx SINE Alu -21 291 2 4828 236 91 43 chr1 103477714 103477964 -178715700 - L2 LINE L2 -241 3072 2835 2073 141 13 16 chr1 103477964 103478340 -178715324 + THE1C LTR MaLR 1 375 0 4828 236 91 43 chr1 103478340 103478415 -178715249 - L2 LINE L2 -478 2835 2765 2173 115 3 3 chr1 103478415 103478719 -178714945 - AluSp SINE Alu -9 304 1 4828 236 91 43 chr1 103478719 103479793 -178713871 - L2 LINE L2 -548 2765 1744 270 0 0 0 chr1 103479793 103479823 -178713841 + (TA)n Simple_repeat Simple_repeat 2 31 0 2123 120 7 3 chr1 103479823 103480114 -178713550 - AluSg SINE Alu -18 292 1 4828 236 91 43 chr1 103480114 103480312 -178713352 - L2 LINE L2 -1568 1745 1394 199 226 19 19 chr1 103480384 103480437 -178713227 - L2 LINE L2 -1933 1381 1329 327 206 0 0 chr1 103480439 103480502 -178713162 - MLT1A1 LTR MaLR 0 365 303 2371 70 7 0 chr1 103481020 103481320 -178712344 - AluSg SINE Alu -8 302 1 253 259 94 12 chr1 103481835 103481920 -178711744 - MIR3 SINE MIR -28 180 89 558 123 9 26 chr1 103482056 103482170 -178711494 - L1PA15 LINE L1 0 6165 6054 273 221 59 29 chr1 103482276 103482344 -178711320 - MIR SINE MIR -57 151 82 304 202 202 0 chr1 103482741 103482835 -178710829 - L2 LINE L2 0 3313 3201 441 278 35 9 chr1 103482872 103482987 -178710677 + L3 LINE CR1 1336 1453 -124 699 139 0 0 chr1 103482996 103483104 -178710560 - Alu SINE Alu -1 310 203 2695 109 73 113 chr1 103483104 103483159 -178710505 - L1MC3 LINE L1 -629 7156 7100 981 209 0 0 chr1 103483159 103483322 -178710342 - FAM SINE Alu -12 163 1 2695 109 73 113 chr1 103483322 103483850 -178709814 - L1MC3 LINE L1 -685 7100 6601 1867 154 77 3 chr1 103483850 103484174 -178709490 - MER7A DNA MER2_type 0 346 1 2695 109 73 113 chr1 103484174 103484270 -178709394 - L1MC3 LINE L1 -1184 6601 6503 562 227 15 8 chr1 103484325 103484457 -178709207 - L1ME LINE L1 -456 5714 5582 545 186 95 2 chr1 103484457 103484589 -178709075 - LTR40b LTR ERVL 0 462 338 2758 97 10 8 chr1 103484609 103485011 -178708653 + L1PA16 LINE L1 5764 6166 0 425 150 0 0 chr1 103485468 103485528 -178708136 + AluS SINE Alu 5 64 -247 23 0 0 0 chr1 103485663 103485686 -178707978 + AT_rich Low_complexity Low_complexity 1 23 0 2145 75 4 0 chr1 103486576 103486844 -178706820 + AluSc SINE Alu 1 269 -40 2374 183 71 53 chr1 103486945 103487020 -178706644 + L1ME1 LINE L1 5219 5291 -875 2176 129 7 3 chr1 103487020 103487329 -178706335 + AluSx SINE Alu 1 310 -2 2374 183 71 53 chr1 103487329 103487955 -178705709 + L1ME1 LINE L1 5291 5927 -239 1883 78 0 0 chr1 103487968 103488198 -178705466 + AluY SINE Alu 1 230 -81 2388 87 3 6 chr1 103489700 103490012 -178703652 + AluY SINE Alu 1 311 0 1427 70 45 5 chr1 103490828 103491029 -178702635 - L1PA7 LINE L1 -1 6153 5945 1055 181 120 21 chr1 103491291 103491609 -178702055 + MSTD LTR MaLR 1 396 0 1978 143 18 0 chr1 103491949 103492235 -178701429 - AluJo SINE Alu -21 291 1 691 118 0 0 chr1 103492312 103492414 -178701250 - FLAM_A SINE Alu -8 134 33 695 155 50 0 chr1 103492457 103492618 -178701046 - Charlie5 DNA MER1_type 0 2621 2453 180 0 0 0 chr1 103492726 103492746 -178700918 + (A)n Simple_repeat Simple_repeat 1 20 0 5531 151 40 35 chr1 103492756 103493914 -178699750 + L1P LINE L1 11 1173 -4973 641 281 81 9 chr1 103494094 103494315 -178699349 - MIR SINE MIR -19 243 7 1567 198 8 48 chr1 103494814 103495092 -178698572 + MER2 DNA MER2_type 5 268 -76 1966 141 3 16 chr1 103495092 103495261 -178698403 - AluSx SINE Alu -11 301 136 2165 126 0 0 chr1 103495261 103495562 -178698102 - AluSx SINE Alu -11 301 1 1966 141 3 16 chr1 103495562 103495697 -178697967 - AluSx SINE Alu -176 136 1 1567 198 8 48 chr1 103495697 103495772 -178697892 + MER2 DNA MER2_type 268 344 0 28 0 0 0 chr1 103496112 103496140 -178697524 + AT_rich Low_complexity Low_complexity 1 28 0 961 123 13 7 chr1 103496140 103496295 -178697369 - L1PB2 LINE L1 -3 6148 5993 283 325 160 5 chr1 103496756 103496950 -178696714 + L2 LINE L2 1872 2095 -1219 579 253 172 11 chr1 103496972 103497158 -178696506 + MER58A DNA MER1_type 9 224 0 21 0 0 0 chr1 103497294 103497315 -178696349 + AT_rich Low_complexity Low_complexity 1 21 0 2146 93 7 0 chr1 103497315 103497595 -178696069 - AluY SINE Alu -29 282 1 1046 211 14 14 chr1 103497595 103497870 -178695794 - L1M4 LINE L1 -974 5241 4967 * 1077 210 83 35 chr1 103497869 103497998 -178695666 - L1MEc LINE L1 -2897 3318 3197 2122 90 41 0 chr1 103497998 103498288 -178695376 - AluSc SINE Alu -7 302 1 1077 210 83 35 chr1 103498288 103498358 -178695306 - L1MEc LINE L1 -3018 3197 3132 1591 169 44 20 chr1 103498358 103498654 -178695010 - AluJb SINE Alu -9 303 1 1077 210 83 35 chr1 103498654 103498887 -178694777 - L1MEc LINE L1 -3083 3132 2864 898 216 105 70 chr1 103498896 103499265 -178694399 - L1MEc LINE L1 -3654 2561 2198 428 188 31 0 chr1 103499265 103499361 -178694303 - L1MB7 LINE L1 -19 6165 6067 898 216 105 70 chr1 103499361 103499617 -178694047 - L1MEc LINE L1 -4017 2198 1952 306 164 0 0 chr1 103499625 103499680 -178693984 + (CA)n Simple_repeat Simple_repeat 1 55 0 454 254 68 28 chr1 103499838 103500086 -178693578 - L1MEc LINE L1 -3961 2435 2178 2347 98 0 0 chr1 103500413 103500709 -178692955 + AluSg SINE Alu 1 296 -14 182 114 0 29 chr1 103500780 103500815 -178692849 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 1774 101 13 42 chr1 103500817 103501124 -178692540 + L1MA8 LINE L1 5644 5941 -350 1039 153 12 0 chr1 103501134 103501297 -178692367 + FRAM SINE Alu 1 165 -1 1006 94 25 0 chr1 103501373 103501532 -178692132 + L1MA8 LINE L1 6125 6287 -4 1525 154 42 46 chr1 103502020 103502305 -178691359 + AluJo SINE Alu 1 284 -28 491 301 216 26 chr1 103502390 103502769 -178690895 - L2 LINE L2 -9 3304 2854 1050 98 0 0 chr1 103503002 103503135 -178690529 + AluSq/x SINE Alu 1 133 -179 198 0 0 0 chr1 103503135 103503157 -178690507 + (A)n Simple_repeat Simple_repeat 1 22 0 19194 77 12 7 chr1 103503257 103506764 -178686900 + L1PA7 LINE L1 2451 5967 -187 805 227 22 27 chr1 103506864 103507049 -178686615 - AluJo SINE Alu -127 185 2 23 0 0 0 chr1 103507049 103507072 -178686592 + AT_rich Low_complexity Low_complexity 1 23 0 378 210 160 0 chr1 103507567 103507667 -178685997 + MER104 DNA Tc2 35 150 -30 213 196 22 22 chr1 103508304 103508350 -178685314 - L2 LINE L2 -7 3306 3261 193 379 95 17 chr1 103509373 103509489 -178684175 + MIR3 SINE MIR 55 179 -29 * 220 339 15 0 chr1 103509457 103509522 -178684142 - MER5A DNA MER1_type -44 145 80 186 384 105 0 chr1 103510483 103510569 -178683095 - L2 LINE L2 -16 3297 3203 1773 152 21 0 chr1 103510593 103510876 -178682788 + AluJb SINE Alu 1 289 -23 1702 75 26 0 chr1 103510903 103511179 -178682485 + L1M1 LINE L1 5237 5519 -743 217 415 9 9 chr1 103511283 103511389 -178682275 + L2 LINE L2 2985 3090 -182 2351 110 3 0 chr1 103511475 103511783 -178681881 - AluSp SINE Alu -4 309 1 248 306 0 0 chr1 103511806 103511855 -178681809 + L2 LINE L2 3134 3182 -90 322 111 0 19 chr1 103511959 103512013 -178681651 - Alu SINE Alu -247 56 4 877 170 94 0 chr1 103512043 103512214 -178681450 - MIR SINE MIR -40 222 36 485 251 63 46 chr1 103513069 103513244 -178680420 + MIR SINE MIR 34 211 -51 703 155 7 1 chr1 103513784 103513917 -178679747 - L1MB3 LINE L1 0 6174 6035 526 215 118 48 chr1 103513928 103513974 -178679690 - MIR SINE MIR -54 154 113 2272 94 7 3 chr1 103513974 103514273 -178679391 - AluSg SINE Alu -10 300 1 526 215 118 48 chr1 103514273 103514411 -178679253 - MIR SINE MIR -95 113 13 186 167 0 0 chr1 103515017 103515053 -178678611 + (TA)n Simple_repeat Simple_repeat 2 37 0 1618 159 96 3 chr1 103515940 103516273 -178677391 + Tigger1 DNA MER2_type 1 364 -2054 443 238 76 41 chr1 103516641 103516813 -178676851 + MER5B DNA MER1_type 1 178 0 1090 133 0 13 chr1 103517455 103517613 -178676051 + FRAM SINE Alu 1 153 -23 1850 100 0 0 chr1 103519455 103519695 -178673969 + AluSg SINE Alu 56 295 -15 1361 207 15 68 chr1 103520578 103520902 -178672762 - AluJo SINE Alu -1 311 5 2136 135 0 3 chr1 103521175 103521486 -178672178 - AluSx SINE Alu -2 310 1 772 180 58 23 chr1 103522478 103522650 -178671014 + MER5B DNA MER1_type 1 178 0 198 284 10 69 chr1 103522814 103522916 -178670748 - L2 LINE L2 -181 3091 2996 529 341 170 20 chr1 103523014 103523550 -178670114 - L2 LINE L2 -468 2846 2231 495 348 110 45 chr1 103523655 103523936 -178669728 + L2 LINE L2 1061 1322 -1992 2383 102 19 118 chr1 103523936 103524418 -178669246 - Tigger2a DNA MER2_type 0 434 1 495 348 110 45 chr1 103524418 103524846 -178668818 + L2 LINE L2 1322 1816 -1498 22 35 0 0 chr1 103526290 103526319 -178667345 + AT_rich Low_complexity Low_complexity 1 29 0 392 288 51 8 chr1 103526602 103526720 -178666944 - L2 LINE L2 -10 3303 3181 305 172 16 0 chr1 103526854 103526918 -178666746 + (TA)n Simple_repeat Simple_repeat 1 65 0 234 333 50 25 chr1 103527641 103527761 -178665903 + L2 LINE L2 1845 1967 -1347 276 318 194 20 chr1 103527876 103528077 -178665587 + MIR SINE MIR 21 256 -6 2248 128 0 0 chr1 103528377 103528689 -178664975 + AluSq SINE Alu 2 313 0 1649 164 43 40 chr1 103529109 103529408 -178664256 + AluJb SINE Alu 1 300 -12 379 290 131 18 chr1 103529562 103529852 -178663812 - L2 LINE L2 -209 3063 2738 663 160 0 0 chr1 103529958 103530064 -178663600 + FRAM SINE Alu 54 159 -17 1936 146 17 3 chr1 103530164 103530459 -178663205 + AluSx SINE Alu 1 299 -13 252 302 85 28 chr1 103530763 103530869 -178662795 + L2 LINE L2 3185 3296 -17 261 57 0 0 chr1 103530870 103530905 -178662759 + (TG)n Simple_repeat Simple_repeat 2 36 0 1173 122 0 18 chr1 103530910 103531074 -178662590 - AluSg/x SINE Alu -10 302 142 547 299 84 53 chr1 103531181 103531296 -178662368 - L1MEc LINE L1 -4579 1817 1707 2423 66 13 3 chr1 103531296 103531601 -178662063 + AluY SINE Alu 1 308 -3 547 299 84 53 chr1 103531601 103532258 -178661406 - L1MEc LINE L1 -4689 1707 1021 455 261 57 37 chr1 103533654 103533899 -178659765 + L1M4 LINE L1 5084 5333 -813 468 130 0 110 chr1 103534142 103534197 -178659467 + MER5A DNA MER1_type 1 60 -129 240 320 26 0 chr1 103534197 103534217 -178659447 + AluSg/x SINE Alu 112 133 -167 1202 191 37 67 chr1 103534217 103534366 -178659298 + AluJo SINE Alu 1 138 -164 468 130 0 110 chr1 103534275 103534366 -178659298 + MER5A DNA MER1_type 60 4294967196 -289 2401 73 0 13 chr1 103534366 103534666 -178658998 + AluY SINE Alu 1 296 -15 468 130 0 110 chr1 103534666 103534839 -178658825 + MER5A DNA MER1_type -101 89 -100 1202 191 37 67 chr1 103534666 103534815 -178658849 + AluJo SINE Alu 138 290 -12 1055 219 94 31 chr1 103534854 103535174 -178658490 + LTR40b LTR ERVL 121 460 -2 38646 39 4 0 chr1 103536152 103541699 -178651965 - L1PA3 LINE L1 -8 6147 580 794 61 0 0 chr1 103541668 103541766 -178651898 - L1PA3 LINE L1 -6048 98 1 * 2000 114 10 33 chr1 103541964 103542271 -178651393 - AluSg SINE Alu -10 300 1 374 248 0 10 chr1 103542395 103542496 -178651168 + MER103 DNA DNA 55 154 -12 776 154 21 21 chr1 103542951 103543094 -178650570 - FLAM_C SINE Alu 0 143 1 754 155 5 126 chr1 103543666 103543698 -178649966 + MER105 DNA DNA 24 58 -146 652 157 87 65 chr1 103543698 103543740 -178649924 - MER53 DNA DNA 0 189 149 2200 122 3 3 chr1 103543740 103544035 -178649629 + AluSx SINE Alu 1 295 -17 652 157 87 65 chr1 103544035 103544177 -178649487 - MER53 DNA DNA -40 149 1 754 155 5 126 chr1 103544177 103544350 -178649314 + MER105 DNA DNA 58 204 0 263 308 47 0 chr1 103544609 103544716 -178648948 - L1MEc LINE L1 -5947 258 147 21 0 0 0 chr1 103544940 103544961 -178648703 + AT_rich Low_complexity Low_complexity 1 21 0 860 172 0 0 chr1 103544961 103545095 -178648569 - AluJo SINE Alu -178 134 1 1533 142 88 0 chr1 103545459 103545760 -178647904 - AluJb SINE Alu 0 324 1 1719 147 72 0 chr1 103545769 103546034 -178647630 - AluSx SINE Alu -20 292 9 545 218 97 32 chr1 103546063 103546187 -178647477 + FLAM_A SINE Alu 1 132 -1 370 216 0 0 chr1 103547399 103547473 -178646191 - MIR SINE MIR -113 149 76 2279 107 0 0 chr1 103547618 103547916 -178645748 - AluSg SINE Alu -12 298 1 806 196 81 0 chr1 103547976 103548124 -178645540 + MER21B LTR ERV1 328 487 -376 24 96 0 0 chr1 103549993 103550066 -178643598 + AT_rich Low_complexity Low_complexity 1 73 0 1585 220 27 0 chr1 103551020 103551320 -178642344 + AluJb SINE Alu 3 310 -2 237 242 50 20 chr1 103553302 103553401 -178640263 + L1ME2 LINE L1 5754 5855 -266 2091 167 71 11 chr1 103553766 103554233 -178639431 - L1MA4A LINE L1 -1 6302 5808 326 226 146 30 chr1 103554573 103554737 -178638927 - L1ME3A LINE L1 -220 5950 5768 726 217 104 50 chr1 103555098 103555338 -178638326 - L1ME1 LINE L1 -5 6161 5909 1941 184 105 52 chr1 103555342 103555960 -178637704 + L1M4 LINE L1 4613 5263 -883 1943 114 0 18 chr1 103556064 103556345 -178637319 - AluSx SINE Alu -14 298 23 657 215 118 0 chr1 103556534 103556678 -178636986 + FRAM SINE Alu 1 161 -5 364 125 0 0 chr1 103556678 103556734 -178636930 + MER3 DNA MER1_type 153 208 -1 314 160 0 0 chr1 103556692 103556742 -178636922 - MER3 DNA MER1_type -119 90 41 * 276 130 101 43 chr1 103557405 103557474 -178636190 + L1PA16 LINE L1 6093 6165 -1 9849 108 14 19 chr1 103557480 103559459 -178634205 + L1P3 LINE L1 750 2732 -3729 799 184 13 25 chr1 103559569 103559727 -178633937 + FRAM SINE Alu 18 173 -3 277 279 108 8 chr1 103560146 103560275 -178633389 + MIR SINE MIR 32 173 -89 674 181 7 34 chr1 103560277 103560426 -178633238 + AluJb SINE Alu 143 287 -25 573 205 35 105 chr1 103560448 103560648 -178633016 + L1ME2 LINE L1 5969 6154 -10 254 244 28 99 chr1 103560683 103560896 -178632768 + L1MC5 LINE L1 7716 7913 -48 202 222 0 74 chr1 103562527 103562581 -178631083 + MIR SINE MIR 76 125 -83 1765 173 10 3 chr1 103562974 103563274 -178630390 + AluJb SINE Alu 1 302 -10 2308 94 0 3 chr1 103563774 103564081 -178629583 - AluSg SINE Alu -4 306 1 1338 183 28 28 chr1 103564885 103565136 -178628528 + AluJb SINE Alu 1 251 -61 481 190 21 2 chr1 103565187 103565330 -178628334 + MER58A DNA MER1_type 30 208 -16 288 179 60 0 chr1 103565930 103565997 -178627667 + L1PB4 LINE L1 6079 6149 -7 28 29 0 0 chr1 103566002 103566037 -178627627 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 103566413 103566436 -178627228 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 103566808 103566829 -178626835 + AT_rich Low_complexity Low_complexity 1 21 0 1669 161 62 3 chr1 103567580 103567871 -178625793 - AluJb SINE Alu -4 308 1 21 0 0 0 chr1 103567871 103567892 -178625772 + AT_rich Low_complexity Low_complexity 1 21 0 211 220 0 20 chr1 103568462 103568512 -178625152 + (CATA)n Simple_repeat Simple_repeat 4 52 0 2197 160 108 9 chr1 103568513 103568938 -178624726 + MLT1C LTR MaLR 1 467 0 544 315 97 13 chr1 103568965 103569203 -178624461 + MIR SINE MIR 5 262 0 38 0 0 0 chr1 103569335 103569373 -178624291 + AT_rich Low_complexity Low_complexity 1 38 0 735 300 80 58 chr1 103569423 103569864 -178623800 - L2 LINE L2 -299 3014 2559 1897 186 69 129 chr1 103570350 103571052 -178622612 + MLT1E1 LTR MaLR 3 654 0 226 296 25 49 chr1 103571513 103571594 -178622070 + MIR SINE MIR 21 99 -163 1780 162 0 35 chr1 103572111 103572425 -178621239 - AluJb SINE Alu -9 303 1 531 328 162 57 chr1 103572875 103574595 -178619069 + L2 LINE L2 301 2201 -1113 1821 151 7 17 chr1 103574609 103574900 -178618764 + AluJb SINE Alu 1 288 -24 517 180 62 31 chr1 103575022 103575150 -178618514 - MER33 DNA MER1_type -160 164 33 36 0 0 21 chr1 103575427 103575451 -178618213 + AT_rich Low_complexity Low_complexity 1 25 -21 1583 194 7 7 chr1 103575451 103575740 -178617924 - AluJo SINE Alu -23 289 1 36 0 0 21 chr1 103575740 103575762 -178617902 + AT_rich Low_complexity Low_complexity 25 46 0 266 298 154 17 chr1 103576351 103576643 -178617021 + L2 LINE L2 1753 2084 -1230 1781 157 3 18 chr1 103576742 103577028 -178616636 + AluJb SINE Alu 7 288 -24 228 209 30 0 chr1 103577028 103577095 -178616569 + (TA)n Simple_repeat Simple_repeat 2 70 0 1762 166 0 7 chr1 103577175 103577465 -178616199 + AluJb SINE Alu 1 288 -24 556 250 73 32 chr1 103577488 103577736 -178615928 + L1MC5 LINE L1 7660 7917 -44 242 321 170 12 chr1 103577759 103577924 -178615740 + L2 LINE L2 2371 2561 -753 4120 181 38 19 chr1 103578143 103578901 -178614763 + MER21B LTR ERV1 1 773 -90 321 305 245 0 chr1 103579139 103579290 -178614374 + L2 LINE L2 17 204 -3110 1742 249 138 20 chr1 103579293 103579970 -178613694 + L2 LINE L2 316 1077 -2237 1879 141 10 3 chr1 103579970 103580269 -178613395 + AluSx SINE Alu 1 301 -11 1742 249 138 20 chr1 103580269 103580281 -178613383 + L2 LINE L2 1077 1086 -2228 2524 101 52 24 chr1 103580447 103580871 -178612793 + L1MA1 LINE L1 5867 6302 0 931 110 225 11 chr1 103580973 103581164 -178612500 - Tigger7 DNA MER2_type 0 2487 2256 21 36 0 0 chr1 103581186 103581214 -178612450 + AT_rich Low_complexity Low_complexity 1 28 0 2122 126 7 0 chr1 103581294 103581595 -178612069 - AluSx SINE Alu -9 303 1 359 280 101 75 chr1 103581791 103582219 -178611445 + L2 LINE L2 2043 2481 -833 606 284 171 5 chr1 103582278 103582500 -178611164 + MIR SINE MIR 4 262 0 1825 124 79 28 chr1 103582886 103583240 -178610424 - THE1C LTR MaLR 0 375 4 854 150 0 0 chr1 103583735 103583868 -178609796 - FLAM_C SINE Alu 0 133 1 1920 119 106 3 chr1 103586612 103586924 -178606740 - MER7A DNA MER2_type -4 342 1 460 262 73 42 chr1 103587524 103587715 -178605949 - L2 LINE L2 0 3313 3117 780 169 0 15 chr1 103587946 103588082 -178605582 + FLAM_C SINE Alu 1 134 -9 34 24 0 0 chr1 103588082 103588123 -178605541 + AT_rich Low_complexity Low_complexity 1 41 0 1034 103 57 0 chr1 103588564 103588739 -178604925 + L1MA7 LINE L1 6102 6286 -5 809 108 50 0 chr1 103588747 103588867 -178604797 + FLAM_C SINE Alu 1 126 -7 31 76 0 0 chr1 103589404 103589470 -178604194 + AT_rich Low_complexity Low_complexity 1 66 0 464 278 17 29 chr1 103589592 103589765 -178603899 - MIR SINE MIR 0 262 92 798 245 182 57 chr1 103590415 103590681 -178602983 + L1ME3A LINE L1 4774 5005 -1157 1799 149 7 7 chr1 103590681 103590970 -178602694 + AluSx SINE Alu 2 290 -22 2458 60 0 3 chr1 103590979 103591278 -178602386 + AluY SINE Alu 3 300 -11 798 245 182 57 chr1 103591278 103591825 -178601839 + L1ME3A LINE L1 5012 5720 -442 2223 115 69 10 chr1 103591825 103592215 -178601449 + L1MB3 LINE L1 5764 6176 -7 798 245 182 57 chr1 103592215 103592405 -178601259 + L1ME3A LINE L1 5720 5885 -277 1177 141 112 0 chr1 103592406 103592612 -178601052 + AluJo SINE Alu 1 229 -83 22 0 0 0 chr1 103592626 103592648 -178601016 + AT_rich Low_complexity Low_complexity 1 22 0 264 314 69 53 chr1 103592797 103592985 -178600679 + L1ME3A LINE L1 5972 6162 -8 2039 150 0 0 chr1 103594428 103594715 -178598949 + AluSx SINE Alu 1 287 -25 2440 79 0 0 chr1 103594913 103595204 -178598460 + AluSc SINE Alu 2 292 -17 585 129 0 0 chr1 103595289 103595382 -178598282 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 287 183 33 0 chr1 103595716 103595776 -178597888 - MIR3 SINE MIR -7 201 140 204 156 22 0 chr1 103596313 103596358 -178597306 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1915 139 4 0 chr1 103596366 103596640 -178597024 + AluSx SINE Alu 1 275 -37 602 214 224 9 chr1 103596686 103596896 -178596768 + MER112 DNA MER1_type 2 256 0 301 368 43 0 chr1 103596923 103597040 -178596624 + MIR3 SINE MIR 81 202 -6 2095 113 3 7 chr1 103597166 103597459 -178596205 + AluSx SINE Alu 21 312 0 1926 140 14 7 chr1 103597476 103597761 -178595903 + AluSx SINE Alu 1 287 -25 39 22 0 0 chr1 103597761 103597807 -178595857 + AT_rich Low_complexity Low_complexity 1 46 0 587 131 24 18 chr1 103597808 103597976 -178595688 + (TA)n Simple_repeat Simple_repeat 2 170 0 440 300 104 18 chr1 103599744 103599964 -178593700 + MIR SINE MIR 11 249 -13 295 366 13 0 chr1 103600490 103600643 -178593021 - L1ME3 LINE L1 -28 6117 5963 1109 276 105 0 chr1 103600754 103601153 -178592511 - L1ME3 LINE L1 -380 5773 5333 699 124 19 0 chr1 103601157 103601262 -178592402 - L1PBa LINE L1 -5440 1423 1317 2836 162 152 3 chr1 103601266 103601852 -178591812 - L1PBa LINE L1 -5700 1163 491 12689 120 142 17 chr1 103601852 103604386 -178589278 - L1PBa LINE L1 -3411 3451 636 852 112 0 0 chr1 103604400 103604525 -178589139 - L1PBa LINE L1 -6736 127 3 399 270 7 27 chr1 103604540 103604688 -178588976 - L1ME3 LINE L1 -2299 3830 3686 399 232 97 65 chr1 103604692 103604877 -178588787 - LTR33 LTR ERVL 0 521 331 581 263 51 0 chr1 103604935 103605072 -178588592 - LTR33 LTR ERVL -343 178 35 546 196 123 11 chr1 103605096 103605275 -178588389 - L1ME3 LINE L1 -2443 3686 3488 2099 122 6 16 chr1 103605282 103605594 -178588070 - AluSx SINE Alu -3 309 1 585 219 148 30 chr1 103605663 103605832 -178587832 + MER5A DNA MER1_type 1 189 0 532 271 96 4 chr1 103605863 103606092 -178587572 - L1ME3 LINE L1 -3562 2567 2318 510 299 55 19 chr1 103606129 103606490 -178587174 - L1ME3 LINE L1 -4094 2216 1843 614 288 127 3 chr1 103606555 103606885 -178586779 - L1ME3 LINE L1 -4584 1726 1356 588 289 128 23 chr1 103606888 103607286 -178586378 - L1ME3 LINE L1 -4916 1203 764 286 320 70 26 chr1 103607978 103608134 -178585530 - MIR SINE MIR -95 167 5 316 253 27 14 chr1 103609237 103609383 -178584281 + L1MC5 LINE L1 7630 7777 -184 1222 159 65 30 chr1 103609408 103609546 -178584118 + AluJo SINE Alu 2 153 -159 2369 88 0 7 chr1 103609546 103609852 -178583812 + AluY SINE Alu 1 304 -7 1222 159 65 30 chr1 103609852 103609945 -178583719 + AluJo SINE Alu 153 241 -71 823 91 7 17 chr1 103609953 103610095 -178583569 - L1ME LINE L1 -581 5581 5448 345 266 70 7 chr1 103610241 103610256 -178583408 - HAL1b LINE L1 -6 1342 1328 835 217 90 117 chr1 103610256 103610813 -178582851 - L1ME4a LINE L1 -44 6077 1191 26 50 0 0 chr1 103611145 103611185 -178582479 + AT_rich Low_complexity Low_complexity 1 40 0 195 174 0 65 chr1 103611337 103611383 -178582281 - MIR SINE MIR -142 120 78 21 36 0 0 chr1 103612030 103612058 -178581606 + AT_rich Low_complexity Low_complexity 1 28 0 1078 126 218 61 chr1 103613490 103613751 -178579913 - AluJo SINE Alu 0 302 1 595 164 25 179 chr1 103614088 103614289 -178579375 - MER5B DNA MER1_type -8 170 1 22 0 0 0 chr1 103614305 103614327 -178579337 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 103614540 103614566 -178579098 + AT_rich Low_complexity Low_complexity 1 26 0 283 114 0 5 chr1 103614567 103614613 -178579051 + Alu SINE Alu 2 38 -262 538 245 15 45 chr1 103614707 103614907 -178578757 + L1MC5 LINE L1 7717 7910 -51 594 241 29 29 chr1 103615358 103615532 -178578132 - MER5B DNA MER1_type 0 178 5 21 57 0 0 chr1 103615727 103615762 -178577902 + AT_rich Low_complexity Low_complexity 1 35 0 1905 168 0 0 chr1 103615847 103616150 -178577514 - AluJb SINE Alu -9 303 1 180 0 0 0 chr1 103616326 103616346 -178577318 + (AAATG)n Simple_repeat Simple_repeat 3 22 0 204 269 45 30 chr1 103616368 103616435 -178577229 + L2 LINE L2 3246 3313 0 2014 137 3 0 chr1 103616499 103616784 -178576880 - AluSg SINE Alu -24 286 1 2909 254 108 46 chr1 103616855 103618176 -178575488 - L2 LINE L2 -35 3278 1865 442 256 158 0 chr1 103618144 103618308 -178575356 - MIR SINE MIR -72 190 1 * 428 251 227 67 chr1 103618457 103618800 -178574864 - L2 LINE L2 0 3313 2916 2033 125 17 0 chr1 103618969 103619257 -178574407 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr1 103619336 103619357 -178574307 + AT_rich Low_complexity Low_complexity 1 21 0 496 285 116 37 chr1 103619368 103619772 -178573892 - L1ME LINE L1 -394 5727 5292 22 0 0 0 chr1 103619772 103619794 -178573870 + AT_rich Low_complexity Low_complexity 1 22 0 1026 194 0 0 chr1 103620062 103620237 -178573427 + FAM SINE Alu 1 175 0 324 143 0 0 chr1 103620264 103620320 -178573344 + (GGGA)n Simple_repeat Simple_repeat 4 59 0 1894 166 0 0 chr1 103621005 103621306 -178572358 - AluJo SINE Alu -11 301 1 2015 98 69 0 chr1 103622755 103623031 -178570633 - AluSg SINE Alu -15 295 1 1840 166 3 0 chr1 103624489 103624772 -178568892 + AluJo SINE Alu 2 285 -27 2037 120 28 0 chr1 103625500 103625783 -178567881 + AluSx SINE Alu 1 291 -21 2158 123 17 0 chr1 103625874 103626175 -178567489 + AluSc SINE Alu 1 306 -3 3430 138 34 12 chr1 103627578 103628173 -178565491 - L1MB7 LINE L1 -58 6126 5519 1313 169 52 17 chr1 103629735 103629996 -178563668 - AluJb SINE Alu 0 312 44 31 26 0 0 chr1 103630002 103630040 -178563624 + AT_rich Low_complexity Low_complexity 1 38 0 214 310 0 0 chr1 103630110 103630168 -178563496 + MIR SINE MIR 58 115 -147 537 136 91 0 chr1 103630527 103630615 -178563049 + MER46A DNA MER2_type 1 96 -140 326 324 59 7 chr1 103630718 103630854 -178562810 - MIR SINE MIR -67 195 53 2436 85 3 0 chr1 103630866 103631171 -178562493 + AluSc SINE Alu 1 306 -3 401 279 43 14 chr1 103631220 103631360 -178562304 + MER117 DNA MER1_type 12 155 -42 336 48 0 0 chr1 103631805 103631847 -178561817 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2100 96 0 34 chr1 103631847 103632140 -178561524 - AluSg SINE Alu -27 283 1 259 301 12 24 chr1 103632625 103632708 -178560956 - L3 LINE CR1 -106 1471 1390 22 0 0 0 chr1 103632857 103632879 -178560785 + AT_rich Low_complexity Low_complexity 1 22 0 2161 106 21 0 chr1 103633280 103633562 -178560102 + AluSx SINE Alu 1 288 -24 40 0 0 0 chr1 103633562 103633602 -178560062 + AT_rich Low_complexity Low_complexity 1 40 0 2114 103 0 59 chr1 103633607 103633928 -178559736 + AluSx SINE Alu 3 304 -8 23 54 0 0 chr1 103635217 103635254 -178558410 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 103635378 103635401 -178558263 + AT_rich Low_complexity Low_complexity 1 23 0 11665 29 10 1 chr1 103635401 103637546 -178556118 - L1PA4 LINE L1 -3 6152 3994 31 26 0 0 chr1 103637553 103637591 -178556073 + AT_rich Low_complexity Low_complexity 1 38 0 2311 83 3 3 chr1 103637596 103637886 -178555778 - AluSc SINE Alu -19 290 1 1855 262 48 31 chr1 103638460 103638495 -178555169 - MLT1E LTR MaLR 0 593 560 180 0 0 0 chr1 103638495 103638515 -178555149 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1855 262 48 31 chr1 103638515 103639056 -178554608 - MLT1E LTR MaLR -33 560 7 1821 115 0 52 chr1 103639439 103639726 -178553938 - AluSg SINE Alu 0 310 39 241 322 78 0 chr1 103640525 103640615 -178553049 + MIR SINE MIR 30 126 -82 735 186 77 5 chr1 103641075 103641269 -178552395 + L1M4 LINE L1 4265 4472 -1674 890 150 7 0 chr1 103641275 103641415 -178552249 + FLAM_C SINE Alu 1 141 -2 30187 139 39 47 chr1 103641418 103645814 -178547850 + L1MB7 LINE L1 13 4440 -1744 7105 64 2 0 chr1 103645814 103647498 -178546166 + L1PA7 LINE L1 4459 6149 -5 30187 139 39 47 chr1 103647498 103647514 -178546150 + L1MB7 LINE L1 4440 4455 -1729 1121 173 0 0 chr1 103647514 103647687 -178545977 + AluJb SINE Alu 129 301 -11 30187 139 39 47 chr1 103647687 103648369 -178545295 + L1MB7 LINE L1 4455 5141 -1043 1851 174 0 0 chr1 103648369 103648674 -178544990 + AluJb SINE Alu 1 305 -7 30187 139 39 47 chr1 103648674 103649215 -178544449 + L1MB7 LINE L1 5141 5685 -499 726 212 0 0 chr1 103649215 103649347 -178544317 - FLAM_A SINE Alu 0 133 2 30187 139 39 47 chr1 103649347 103649650 -178544014 + L1MB7 LINE L1 5685 5989 -195 216 0 0 0 chr1 103649650 103649674 -178543990 + (TG)n Simple_repeat Simple_repeat 1 24 0 2263 85 4 0 chr1 103649674 103649955 -178543709 - AluSp SINE Alu -31 282 1 30187 139 39 47 chr1 103649955 103650052 -178543612 + L1MB7 LINE L1 5987 6175 -9 1805 162 0 16 chr1 103650122 103650425 -178543239 + AluJo SINE Alu 1 298 -14 1170 168 15 10 chr1 103650693 103650889 -178542775 + L1MD3 LINE L1 6741 6937 -1058 1930 116 35 3 chr1 103650890 103651174 -178542490 + AluJo SINE Alu 1 293 -19 1233 86 29 0 chr1 103651174 103651349 -178542315 + L1MA3 LINE L1 6126 6305 0 283 277 81 47 chr1 103653053 103653201 -178540463 - MIR3 SINE MIR -29 179 27 1519 151 33 70 chr1 103653445 103653744 -178539920 - AluJo SINE Alu -24 288 1 2238 119 24 32 chr1 103653936 103654314 -178539350 - THE1C LTR MaLR 0 375 1 3165 244 42 24 chr1 103654530 103655491 -178538173 - L1M4 LINE L1 -1873 4273 3296 1892 165 7 0 chr1 103655635 103655932 -178537732 - 7SLRNA srpRNA srpRNA -21 299 1 2280 100 30 0 chr1 103656002 103656303 -178537361 + AluSq SINE Alu 1 310 -3 689 267 34 28 chr1 103656309 103656665 -178536999 - L1MEc LINE L1 -4751 1645 1288 1990 157 0 3 chr1 103656666 103656971 -178536693 - AluJo SINE Alu -8 304 1 2083 138 0 0 chr1 103657000 103657296 -178536368 + AluSg SINE Alu 1 296 -14 757 284 31 21 chr1 103657415 103657704 -178535960 - L1MEc LINE L1 -6083 313 22 1909 141 0 0 chr1 103657718 103657981 -178535683 + AluSx SINE Alu 36 298 -14 2044 142 3 7 chr1 103658058 103658360 -178535304 - AluJb SINE Alu -11 301 1 2201 127 3 0 chr1 103658447 103658755 -178534909 + AluSq SINE Alu 3 311 -2 1634 168 0 68 chr1 103659480 103659631 -178534033 + AluJo SINE Alu 3 124 -188 2419 83 10 3 chr1 103659631 103659931 -178533733 + AluSq SINE Alu 1 302 -11 1634 168 0 68 chr1 103659931 103660088 -178533576 + AluJo SINE Alu 124 290 -22 25 0 0 0 chr1 103660214 103660239 -178533425 + AT_rich Low_complexity Low_complexity 1 25 0 2093 121 3 16 chr1 103660256 103660561 -178533103 - AluSx SINE Alu -11 301 1 2291 99 0 0 chr1 103660577 103660903 -178532761 - AluSx SINE Alu 0 326 1 262 306 56 42 chr1 103661122 103661266 -178532398 - L2 LINE L2 -7 3306 3161 2114 125 10 3 chr1 103661331 103661616 -178532048 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 103661616 103661641 -178532023 + (CA)n Simple_repeat Simple_repeat 2 26 0 2114 125 10 3 chr1 103661641 103661660 -178532004 + AluSx SINE Alu 290 307 -5 1693 166 136 6 chr1 103661669 103662000 -178531664 + MSTD LTR MaLR 23 396 0 852 321 82 16 chr1 103662038 103662555 -178531109 - L2 LINE L2 -231 3082 2530 243 88 0 0 chr1 103663348 103663382 -178530282 + (TCC)n Simple_repeat Simple_repeat 1 34 0 237 301 41 0 chr1 103663611 103663684 -178529980 + L2 LINE L2 3150 3225 -47 409 231 141 20 chr1 103663864 103664028 -178529636 - MIR SINE MIR -65 143 13 305 314 91 11 chr1 103664350 103664525 -178529139 + MIR SINE MIR 25 213 -49 2058 153 7 0 chr1 103665609 103665917 -178527747 - AluJo SINE Alu -2 310 1 253 310 70 70 chr1 103666013 103666355 -178527309 + L2 LINE L2 228 569 -2745 1016 279 83 30 chr1 103666817 103667190 -178526474 + MLT1J LTR MaLR 96 488 -23 448 297 175 29 chr1 103667372 103667634 -178526030 + L1M4 LINE L1 4282 4505 -1641 1826 156 39 7 chr1 103667634 103667917 -178525747 + AluJb SINE Alu 1 292 -20 448 297 175 29 chr1 103667917 103667933 -178525731 + L1M4 LINE L1 4505 4517 -1629 411 21 0 0 chr1 103667933 103667981 -178525683 + (TG)n Simple_repeat Simple_repeat 1 48 0 448 297 175 29 chr1 103667981 103668182 -178525482 + L1M4 LINE L1 4517 4832 -1314 796 138 40 13 chr1 103668249 103668401 -178525263 - L1MA8 LINE L1 -35 6256 6101 888 116 0 23 chr1 103668408 103668537 -178525127 + FLAM_C SINE Alu 2 127 -16 2354 117 0 0 chr1 103668560 103668868 -178524796 + AluSx SINE Alu 1 308 -4 1720 186 3 7 chr1 103668908 103669199 -178524465 + AluJb SINE Alu 1 290 -22 661 195 0 23 chr1 103669221 103669349 -178524315 + FRAM SINE Alu 37 161 -15 504 0 0 0 chr1 103669392 103669448 -178524216 + (TG)n Simple_repeat Simple_repeat 2 57 0 909 150 0 0 chr1 103669576 103669709 -178523955 - FLAM_C SINE Alu 0 133 1 1544 156 34 41 chr1 103669710 103670005 -178523659 - AluJb SINE Alu -19 293 1 249 202 64 64 chr1 103670221 103670315 -178523349 - MLT1L LTR MaLR -415 200 107 2403 86 0 0 chr1 103670391 103670683 -178522981 + AluSq SINE Alu 3 294 -19 280 288 102 42 chr1 103670771 103670986 -178522678 - L2 LINE L2 -233 3039 2812 206 259 150 98 chr1 103671048 103671212 -178522452 + MIR SINE MIR 25 186 -76 2252 103 20 0 chr1 103671997 103672297 -178521367 + AluSx SINE Alu 1 306 -6 388 250 50 0 chr1 103672322 103672422 -178521242 + MIR SINE MIR 49 153 -109 2103 126 0 7 chr1 103672465 103672751 -178520913 + AluSx SINE Alu 9 292 -20 207 0 0 0 chr1 103672755 103672778 -178520886 + (TG)n Simple_repeat Simple_repeat 2 24 0 329 333 160 20 chr1 103673038 103673395 -178520269 - L2 LINE L2 -2 3270 2864 2152 126 3 0 chr1 103673599 103673900 -178519764 + AluSx SINE Alu 1 302 -10 259 258 11 22 chr1 103673917 103674006 -178519658 - L2 LINE L2 -612 2702 2615 990 93 0 8 chr1 103674031 103674160 -178519504 - AluSg SINE Alu -182 128 1 975 151 76 0 chr1 103674405 103674420 -178519244 + AluSg/x SINE Alu 119 131 -179 2260 102 7 0 chr1 103674420 103674715 -178518949 + AluSg SINE Alu 2 298 -12 975 151 76 0 chr1 103674715 103674871 -178518793 + AluSg/x SINE Alu 131 303 -7 472 291 85 26 chr1 103674879 103675017 -178518647 - L2 LINE L2 -1065 2249 2121 2230 112 16 0 chr1 103675017 103675322 -178518342 + AluSx SINE Alu 1 310 -2 472 291 85 26 chr1 103675322 103675489 -178518175 - L2 LINE L2 -1193 2121 1926 322 347 13 13 chr1 103675746 103675896 -178517768 + MIR3 SINE MIR 56 205 -3 2121 92 25 3 chr1 103675955 103676238 -178517426 + AluSc SINE Alu 1 289 -20 1822 166 0 14 chr1 103676251 103676546 -178517118 + AluJo SINE Alu 1 291 -21 26 0 0 0 chr1 103676546 103676572 -178517092 + AT_rich Low_complexity Low_complexity 1 26 0 2387 86 6 10 chr1 103676631 103676945 -178516719 - AluSp SINE Alu 0 313 1 649 141 63 70 chr1 103677019 103677161 -178516503 + 7SLRNA srpRNA srpRNA 165 305 -15 292 289 50 58 chr1 103677337 103677458 -178516206 - L2 LINE L2 -15 3257 3138 591 230 75 24 chr1 103678296 103678509 -178515155 + L1ME4a LINE L1 5621 5844 -277 1307 275 138 57 chr1 103679199 103680559 -178513105 - L1M4 LINE L1 -1250 4896 3392 2390 75 0 3 chr1 103680559 103680851 -178512813 + AluY SINE Alu 1 291 -20 1307 275 138 57 chr1 103680851 103681051 -178512613 - L1M4 LINE L1 -2754 3392 3210 282 265 65 69 chr1 103681054 103681706 -178511958 - L1M4 LINE L1 -3193 2953 2307 1597 193 33 10 chr1 103681706 103682007 -178511657 - AluJb SINE Alu -4 308 1 282 265 65 69 chr1 103682007 103682109 -178511555 - L1M4 LINE L1 -3839 2307 2206 23 54 0 0 chr1 103682945 103682982 -178510682 + AT_rich Low_complexity Low_complexity 1 37 0 572 239 8 0 chr1 103683022 103683139 -178510525 + FLAM_A SINE Alu 1 118 -15 207 69 0 0 chr1 103683187 103683216 -178510448 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 1297 167 22 37 chr1 103683539 103683808 -178509856 - MLT2B1 LTR ERVL -253 267 3 947 301 79 24 chr1 103683826 103684244 -178509420 - MLT1J2 LTR MaLR 0 450 10 1764 177 10 10 chr1 103684244 103684544 -178509120 - AluJo SINE Alu -12 300 1 360 262 71 0 chr1 103684545 103684671 -178508993 + MIR3 SINE MIR 74 208 0 235 250 171 0 chr1 103685152 103685240 -178508424 + L2 LINE L2 3156 3258 -55 2443 70 17 0 chr1 103685375 103685675 -178507989 - AluSx SINE Alu -7 305 1 858 283 4 21 chr1 103686286 103686526 -178507138 - MIR SINE MIR 0 262 27 2347 100 17 0 chr1 103687117 103687416 -178506248 + AluSx SINE Alu 3 306 -6 626 237 92 34 chr1 103688133 103688395 -178505269 + L1ME3 LINE L1 5674 5950 -212 276 231 29 0 chr1 103688395 103688499 -178505165 + (TA)n Simple_repeat Simple_repeat 1 107 0 23 0 0 0 chr1 103688900 103688923 -178504741 + AT_rich Low_complexity Low_complexity 1 23 0 417 193 0 45 chr1 103690436 103690524 -178503140 - L2 LINE L2 0 3313 3230 338 213 12 25 chr1 103690541 103690621 -178503043 + L2 LINE L2 3231 3309 -4 309 313 102 17 chr1 103690889 103691065 -178502599 - MIR3 SINE MIR -4 204 14 312 242 75 83 chr1 103691792 103691912 -178501752 + L2 LINE L2 3154 3272 0 210 118 0 0 chr1 103693390 103693424 -178500240 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 246 88 0 0 chr1 103693425 103693459 -178500205 - L1PA10 LINE L1 -11 6157 6124 898 130 0 0 chr1 103698835 103698950 -178494714 - FLAM_C SINE Alu -17 116 2 371 244 78 16 chr1 103699160 103699317 -178494347 + MIR SINE MIR 15 175 -66 2341 103 0 0 chr1 103699326 103699626 -178494038 - AluSg SINE Alu -10 300 1 30 27 0 0 chr1 103699738 103699775 -178493889 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr1 103699977 103700017 -178493647 + AT_rich Low_complexity Low_complexity 1 40 0 563 293 48 4 chr1 103700055 103700284 -178493380 - L1ME LINE L1 -299 5822 5584 243 227 84 34 chr1 103702051 103702170 -178491494 - L1ME4a LINE L1 -27 6094 5970 288 271 65 50 chr1 103702196 103702395 -178491269 - L1ME4a LINE L1 -313 5808 5607 771 164 16 8 chr1 103702432 103702560 -178491104 - FLAM_C SINE Alu -14 129 1 310 265 12 0 chr1 103702560 103702643 -178491021 - L1ME4a LINE L1 -502 5619 5536 855 207 142 30 chr1 103702676 103702908 -178490756 + MIR SINE MIR 2 259 -3 262 291 53 17 chr1 103702951 103703084 -178490580 - MIR SINE MIR -45 163 23 2451 90 0 0 chr1 103703183 103703494 -178490170 - AluSx SINE Alu -1 311 1 2230 102 0 0 chr1 103703787 103704115 -178489549 + AluSx SINE Alu 1 328 0 198 342 81 67 chr1 103704443 103704592 -178489072 - L2 LINE L2 -10 3303 3153 458 168 0 11 chr1 103705029 103705124 -178488540 + CT-rich Low_complexity Low_complexity 3 96 0 24 32 0 0 chr1 103706106 103706137 -178487527 + AT_rich Low_complexity Low_complexity 1 31 0 1151 155 0 0 chr1 103706305 103706473 -178487191 - AluSg/x SINE Alu -11 301 134 2174 125 0 7 chr1 103706473 103706776 -178486888 - AluSq SINE Alu -12 301 1 2292 39 18 0 chr1 103706776 103707058 -178486606 - HERVL-A2 LTR ERVL -5367 287 1 3231 97 51 0 chr1 103707058 103707100 -178486564 - MLT2A2 LTR ERVL 0 453 415 312 70 0 0 chr1 103707100 103707143 -178486521 + (CA)n Simple_repeat Simple_repeat 2 44 0 3231 97 51 0 chr1 103707143 103707531 -178486133 - MLT2A2 LTR ERVL -38 415 1 929 48 0 32 chr1 103707855 103707979 -178485685 - L1PA8 LINE L1 -1 6171 6052 554 232 32 32 chr1 103708011 103708196 -178485468 - L1MC5 LINE L1 -74 7887 7703 * 6308 91 24 2 chr1 103708193 103709172 -178484492 + L1PA10 LINE L1 5141 6137 -31 1854 154 50 3 chr1 103709308 103709606 -178484058 + AluJb SINE Alu 1 312 0 2388 110 18 94 chr1 103709723 103710170 -178483494 - L1MA8 LINE L1 -6 6285 5873 1204 122 68 0 chr1 103710624 103710829 -178482835 + L1MD3 LINE L1 7777 7995 0 * 2150 157 27 16 chr1 103710825 103711363 -178482301 + L1MB7 LINE L1 4945 5490 -684 534 133 10 0 chr1 103711365 103711463 -178482201 + L1MA7 LINE L1 6193 6291 0 3922 136 33 39 chr1 103711496 103711624 -178482040 + L1MB7 LINE L1 5488 5615 -569 2464 70 0 0 chr1 103711624 103711923 -178481741 + AluY SINE Alu 1 299 -12 3922 136 33 39 chr1 103711923 103712494 -178481170 + L1MB7 LINE L1 5615 6183 -1 1159 258 38 57 chr1 103712572 103712607 -178481057 + MLT1I LTR MaLR 102 136 -273 2357 95 13 0 chr1 103712607 103712731 -178480933 + AluSg SINE Alu 1 122 -188 441 0 0 0 chr1 103712731 103712780 -178480884 + (CA)n Simple_repeat Simple_repeat 2 50 0 2357 95 13 0 chr1 103712780 103712961 -178480703 + AluSg SINE Alu 122 310 0 1159 258 38 57 chr1 103712961 103713239 -178480425 + MLT1I LTR MaLR 136 409 0 184 236 109 18 chr1 103713516 103713571 -178480093 - L2 LINE L2 -18 3295 3236 217 276 17 0 chr1 103715239 103715297 -178478367 + MIR SINE MIR 28 86 -176 845 205 285 9 chr1 103715362 103715699 -178477965 - L2 LINE L2 0 3313 2884 966 131 0 0 chr1 103715891 103716021 -178477643 - FLAM_C SINE Alu -2 131 2 3294 157 61 57 chr1 103716058 103716777 -178476887 - L1MB4 LINE L1 -34 6146 5425 198 167 0 0 chr1 103716834 103716870 -178476794 + (TG)n Simple_repeat Simple_repeat 2 37 0 746 180 0 16 chr1 103716888 103717016 -178476648 - FLAM_C SINE Alu -6 127 2 432 0 0 0 chr1 103717018 103717066 -178476598 + (TG)n Simple_repeat Simple_repeat 2 49 0 1089 146 40 71 chr1 103717226 103717452 -178476212 + MER20 DNA MER1_type 1 219 0 2259 71 18 0 chr1 103717801 103718083 -178475581 + AluSp SINE Alu 1 287 -26 2196 98 7 3 chr1 103718253 103718549 -178475115 - AluSx SINE Alu -11 301 5 21 0 0 0 chr1 103718882 103718903 -178474761 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr1 103719331 103719358 -178474306 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1031 156 0 24 chr1 103719415 103719582 -178474082 - FAM SINE Alu -11 174 12 1497 171 23 0 chr1 103720504 103720762 -178472902 - MER58B DNA MER1_type 0 341 78 2189 121 13 3 chr1 103721088 103721394 -178472270 + AluSx SINE Alu 2 310 -2 283 223 17 23 chr1 103721445 103721474 -178472190 + MIR SINE MIR 35 63 -145 826 146 0 23 chr1 103721474 103721604 -178472060 + FLAM_C SINE Alu 2 128 -5 283 223 17 23 chr1 103721604 103721654 -178472010 + MIR SINE MIR 63 110 -98 2297 115 0 3 chr1 103722786 103723098 -178470566 + AluSx SINE Alu 1 311 -1 534 31 0 0 chr1 103723432 103723496 -178470168 + (TA)n Simple_repeat Simple_repeat 2 65 0 384 252 81 76 chr1 103724009 103724069 -178469595 - MIR SINE MIR 0 262 204 2165 114 0 23 chr1 103724069 103724377 -178469287 - AluJb SINE Alu -11 301 1 384 252 81 76 chr1 103724377 103724526 -178469138 - MIR SINE MIR -58 204 52 672 201 149 9 chr1 103724527 103724741 -178468923 - L1MC5 LINE L1 -51 7910 7667 721 292 161 16 chr1 103726438 103726681 -178466983 - MER115 DNA AcHobo -369 324 47 1961 169 43 0 chr1 103727023 103727349 -178466315 - MER2 DNA MER2_type -2 342 3 1890 145 3 29 chr1 103727807 103728118 -178465546 - AluJb SINE Alu -8 304 2 412 261 78 20 chr1 103728379 103728532 -178465132 + HAL1 LINE L1 713 874 -1633 1070 214 82 79 chr1 103728604 103728960 -178464704 + HAL1 LINE L1 1300 1656 -851 845 219 88 75 chr1 103729031 103729406 -178464258 + HAL1 LINE L1 1663 2042 -465 1555 169 111 33 chr1 103729451 103729531 -178464133 + L1MB8 LINE L1 5783 5855 -323 2224 120 0 10 chr1 103729531 103729839 -178463825 + AluSx SINE Alu 1 305 -7 1555 169 111 33 chr1 103729839 103730120 -178463544 + L1MB8 LINE L1 5855 6172 -6 346 201 164 38 chr1 103730330 103730489 -178463175 + HAL1 LINE L1 2137 2315 -192 2046 145 0 10 chr1 103730489 103730792 -178462872 + AluJo SINE Alu 1 300 -12 1956 151 0 3 chr1 103730879 103731183 -178462481 - AluJb SINE Alu -9 303 1 2381 94 0 3 chr1 103731329 103731628 -178462036 + AluSx SINE Alu 1 298 -14 305 280 153 65 chr1 103731821 103732277 -178461387 - L1ME4a LINE L1 -74 6047 5534 2139 104 17 0 chr1 103732277 103732575 -178461089 + AluSg SINE Alu 2 304 -6 305 280 153 65 chr1 103732575 103732661 -178461003 - L1ME4a LINE L1 -587 5534 5457 1604 215 3 7 chr1 103732691 103732979 -178460685 - AluJo SINE Alu -15 287 1 749 189 33 0 chr1 103732989 103733111 -178460553 - FLAM_C SINE Alu -7 126 1 261 284 37 0 chr1 103733140 103733221 -178460443 - L1MC5 LINE L1 -66 7895 7812 42 0 0 0 chr1 103733338 103733380 -178460284 + AT_rich Low_complexity Low_complexity 1 42 0 2251 115 0 34 chr1 103733724 103734047 -178459617 + AluSx SINE Alu 1 312 0 330 269 74 19 chr1 103734074 103734182 -178459482 - MER5A DNA MER1_type -50 139 26 2013 137 7 10 chr1 103734749 103735049 -178458615 - AluSx SINE Alu -13 299 1 2023 144 7 0 chr1 103735188 103735487 -178458177 - AluSx SINE Alu -11 301 1 1937 165 0 0 chr1 103735980 103736277 -178457387 - AluJb SINE Alu -15 297 1 2526 163 37 23 chr1 103736469 103736954 -178456710 + L1MC2 LINE L1 5844 6335 -9 2105 147 0 0 chr1 103737051 103737363 -178456301 + AluSx SINE Alu 1 312 0 1628 240 100 18 chr1 103737401 103737959 -178455705 - L1ME3 LINE L1 -1 6161 5558 1260 272 58 2 chr1 103738115 103738237 -178455427 + L1ME3 LINE L1 5498 5612 -550 465 236 81 8 chr1 103738237 103738360 -178455304 - MER94 DNA DNA 0 134 3 1260 272 58 2 chr1 103738360 103738686 -178454978 + L1ME3 LINE L1 5612 5971 -191 16432 79 55 1 chr1 103738798 103741126 -178452538 - L1P LINE L1 -1341 4805 2352 2373 85 3 0 chr1 103741127 103741422 -178452242 - AluSg SINE Alu -14 296 1 374 230 14 0 chr1 103741532 103741606 -178452058 + MIR SINE MIR 38 112 -96 207 295 98 0 chr1 103741669 103741730 -178451934 + MIR3 SINE MIR 118 184 -24 208 323 42 39 chr1 103741837 103742072 -178451592 - L2 LINE L2 -208 3064 2004 704 144 54 0 chr1 103742469 103742580 -178451084 + FLAM_C SINE Alu 1 117 -16 33 25 0 0 chr1 103742581 103742621 -178451043 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr1 103743119 103743149 -178450515 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 103743361 103743384 -178450280 + AT_rich Low_complexity Low_complexity 1 23 0 1875 161 15 35 chr1 103743478 103743876 -178449788 - L1MB8 LINE L1 -5 6173 5784 12093 102 110 44 chr1 103743878 103746103 -178447561 + Tigger1 DNA MER2_type 1 2372 -46 2247 173 56 17 chr1 103746103 103746624 -178447040 - L1MB8 LINE L1 -412 5766 5221 2349 100 0 0 chr1 103746736 103747047 -178446617 - AluSx SINE Alu -1 311 1 4069 180 43 9 chr1 103747099 103748137 -178445527 + L1MB8 LINE L1 5090 6162 -16 2389 75 0 3 chr1 103748272 103748578 -178445086 - AluY SINE Alu -6 305 1 376 252 10 10 chr1 103748648 103748751 -178444913 + MIR SINE MIR 160 262 0 343 339 111 26 chr1 103748782 103749315 -178444349 + L2 LINE L2 2687 3270 -2 22 0 0 0 chr1 103751715 103751737 -178441927 + AT_rich Low_complexity Low_complexity 1 22 0 27507 90 13 6 chr1 103751917 103756962 -178436702 - L1PA7 LINE L1 0 6154 1088 293 259 0 19 chr1 103757072 103757180 -178436484 - L1ME LINE L1 -301 5820 5715 609 303 61 22 chr1 103757401 103757629 -178436035 - L2 LINE L2 -2026 1288 1052 28989 69 5 2 chr1 103757632 103762512 -178431152 - L1PA6 LINE L1 -2 6152 1267 734 195 60 0 chr1 103762612 103762761 -178430903 - Tigger3(Golem) DNA MER2_type -2871 158 1 2144 91 52 3 chr1 103763079 103763365 -178430299 - AluSq SINE Alu -13 300 1 307 253 0 0 chr1 103763687 103763762 -178429902 + L1MC4a LINE L1 5834 5908 -1900 2257 98 10 0 chr1 103764073 103764369 -178429295 + AluSx SINE Alu 1 299 -13 26 82 0 0 chr1 103765151 103765212 -178428452 + AT_rich Low_complexity Low_complexity 1 61 0 877 172 7 7 chr1 103765272 103765417 -178428247 + FRAM SINE Alu 1 145 -31 1787 135 14 28 chr1 103765516 103765798 -178427866 + AluSx SINE Alu 25 302 -10 2119 87 7 30 chr1 103766756 103767081 -178426583 + AluSx SINE Alu 1 312 0 338 233 244 40 chr1 103767108 103767284 -178426380 + MIR SINE MIR 50 261 -1 2302 104 0 3 chr1 103767325 103767632 -178426032 + AluSx SINE Alu 1 306 -6 242 285 23 8 chr1 103767649 103767779 -178425885 + L1ME LINE L1 90 221 -5984 577 281 111 55 chr1 103767958 103768464 -178425200 + L1ME LINE L1 438 971 -5234 907 80 0 0 chr1 103768488 103768600 -178425064 + AluSq/x SINE Alu 1 112 -200 2109 109 0 0 chr1 103768974 103769258 -178424406 + AluSx SINE Alu 29 312 0 300 181 0 28 chr1 103769260 103769332 -178424332 + L1ME LINE L1 2198 2267 -4129 829 99 59 46 chr1 103769347 103769499 -178424165 + MER3 DNA MER1_type 50 203 -6 766 239 32 4 chr1 103769509 103769671 -178423993 + L1ME LINE L1 2232 2405 -3810 2364 107 0 3 chr1 103769671 103769980 -178423684 + AluSg SINE Alu 1 308 -2 766 239 32 4 chr1 103769980 103770068 -178423596 + L1ME LINE L1 2405 2489 -3726 668 172 23 0 chr1 103770091 103770219 -178423445 - FLAM_C SINE Alu -4 139 9 1318 168 65 62 chr1 103770240 103770579 -178423085 - L1MA10 LINE L1 -1 6333 5994 1006 232 39 53 chr1 103770580 103770727 -178422937 + L1ME LINE L1 3616 3764 -2451 549 30 0 0 chr1 103770727 103770794 -178422870 + (TC)n Simple_repeat Simple_repeat 2 68 0 1558 152 0 31 chr1 103770796 103771053 -178422611 - AluJo SINE Alu -25 287 39 1006 232 39 53 chr1 103771053 103771193 -178422471 + L1ME LINE L1 3765 3903 -2312 2250 98 3 3 chr1 103771193 103771488 -178422176 + AluSp SINE Alu 1 295 -18 1006 232 39 53 chr1 103771488 103771554 -178422110 + L1ME LINE L1 3903 3968 -2247 2174 99 3 0 chr1 103771574 103771880 -178421784 + AluSp SINE Alu 1 307 0 2275 198 42 87 chr1 103771884 103772352 -178421312 + L1ME LINE L1 4601 5089 -1146 2064 111 24 17 chr1 103772352 103772650 -178421014 + AluSg SINE Alu 5 304 -6 2275 198 42 87 chr1 103772650 103772830 -178420834 + L1ME LINE L1 5089 5276 -959 2307 94 0 0 chr1 103772830 103773117 -178420547 + AluSc SINE Alu 2 288 -21 2275 198 42 87 chr1 103773117 103773180 -178420484 + L1ME LINE L1 5276 5340 -895 2298 109 3 0 chr1 103773180 103773482 -178420182 + AluSq SINE Alu 9 311 -2 2275 198 42 87 chr1 103773482 103773784 -178419880 + L1ME LINE L1 5340 5654 -581 2371 72 7 3 chr1 103773784 103774090 -178419574 + AluSx SINE Alu 1 307 -5 2275 198 42 87 chr1 103774090 103774211 -178419453 + L1ME LINE L1 5654 5657 -578 2237 113 0 0 chr1 103774211 103774520 -178419144 + AluSx SINE Alu 1 309 -3 2275 198 42 87 chr1 103774520 103774616 -178419048 + L1ME LINE L1 5657 5756 -479 2187 119 0 6 chr1 103774621 103774932 -178418732 + AluSg SINE Alu 1 309 -1 6115 124 14 19 chr1 103774948 103776047 -178417617 + L1MA4A LINE L1 5156 6248 -55 2266 117 0 0 chr1 103776047 103776346 -178417318 + AluSg SINE Alu 2 300 -10 6115 124 14 19 chr1 103776346 103776398 -178417266 + L1MA4A LINE L1 6248 6299 -4 287 140 220 20 chr1 103776413 103776513 -178417151 + L1ME LINE L1 5748 5867 -366 237 291 44 75 chr1 103776628 103776923 -178416741 + L1MEc LINE L1 1346 1631 -4765 1992 95 92 0 chr1 103776949 103777233 -178416431 + AluSp SINE Alu 1 310 -3 1609 173 10 17 chr1 103777406 103777707 -178415957 + AluJb SINE Alu 5 303 -9 187 173 135 19 chr1 103778057 103778109 -178415555 + MIR SINE MIR 203 260 -2 32 43 0 0 chr1 103778110 103778156 -178415508 + AT_rich Low_complexity Low_complexity 1 46 0 342 217 96 0 chr1 103778305 103778388 -178415276 + MIR3 SINE MIR 64 154 -54 192 77 0 0 chr1 103778461 103778487 -178415177 + (A)n Simple_repeat Simple_repeat 1 26 0 242 128 43 0 chr1 103779605 103779652 -178414012 + GA-rich Low_complexity Low_complexity 2 50 0 2233 101 10 0 chr1 103779784 103780081 -178413583 + AluSx SINE Alu 3 302 -10 1260 138 0 0 chr1 103780090 103780271 -178413393 + AluSg/x SINE Alu 123 303 -9 357 329 95 13 chr1 103781351 103781509 -178412155 - MIR3 SINE MIR -16 192 22 2359 103 0 0 chr1 103781903 103782215 -178411449 - AluSx SINE Alu 0 312 1 2181 92 0 0 chr1 103782355 103782637 -178411027 - AluSx SINE Alu -30 282 1 393 213 80 73 chr1 103782855 103783005 -178410659 + MIR SINE MIR 25 175 -87 2108 110 4 0 chr1 103784569 103784889 -178408775 - AluSx SINE Alu 0 321 1 286 221 0 67 chr1 103785052 103785109 -178408555 - MER46A DNA MER2_type -43 193 144 1028 139 42 0 chr1 103785109 103785274 -178408390 + Tigger4(Zombi) DNA MER2_type 2 173 -2558 * 1692 98 38 54 chr1 103785272 103785395 -178408269 + Tigger4(Zombi) DNA MER2_type 2422 2545 -186 2202 92 20 3 chr1 103785395 103785688 -178407976 + AluSx SINE Alu 1 298 -14 1692 98 38 54 chr1 103785688 103785796 -178407868 + Tigger4(Zombi) DNA MER2_type 2545 2649 -82 225 0 0 0 chr1 103785796 103785821 -178407843 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1692 98 38 54 chr1 103785821 103785903 -178407761 + Tigger4(Zombi) DNA MER2_type 2649 2731 0 373 208 10 50 chr1 103785903 103786004 -178407660 - MER96B DNA MER1_type? -318 99 3 426 268 179 2 chr1 103786110 103786255 -178407409 + MIR3 SINE MIR 30 199 -9 444 272 79 0 chr1 103786510 103786624 -178407040 - MIR3 SINE MIR -76 132 10 210 37 0 0 chr1 103786860 103786887 -178406777 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 813 144 29 75 chr1 103786976 103787039 -178406625 - MIR SINE MIR -83 179 115 2216 121 3 3 chr1 103787039 103787345 -178406319 + AluSg SINE Alu 1 306 -4 813 144 29 75 chr1 103787345 103787454 -178406210 - MIR SINE MIR -147 115 15 228 373 10 0 chr1 103787488 103787590 -178406074 - L3 LINE CR1 -110 1467 1365 1393 189 73 15 chr1 103787955 103788216 -178405448 + AluJb SINE Alu 9 307 0 208 0 0 0 chr1 103788216 103788239 -178405425 + (TAAA)n Simple_repeat Simple_repeat 2 156 0 368 298 12 68 chr1 103788294 103788455 -178405209 + L1MC4a LINE L1 5735 5886 -1922 1681 150 12 78 chr1 103788461 103788781 -178404883 + AluJo SINE Alu 1 299 -13 38733 67 6 3 chr1 103788784 103794908 -178398756 + L1PA5 LINE L1 13 6154 0 34 55 0 0 chr1 103794920 103794975 -178398689 + AT_rich Low_complexity Low_complexity 1 55 0 181 295 16 16 chr1 103795161 103795222 -178398442 + L2 LINE L2 3252 3312 -1 567 144 11 0 chr1 103795504 103795594 -178398070 + L1MC1 LINE L1 6225 6315 -18 225 0 0 0 chr1 103795600 103795625 -178398039 + (TG)n Simple_repeat Simple_repeat 2 26 0 1377 132 0 29 chr1 103795955 103796160 -178397504 + AluSx SINE Alu 1 199 -113 584 131 0 0 chr1 103796839 103796923 -178396741 - AluJ/FLAM SINE Alu -228 84 1 29 28 0 0 chr1 103798101 103798137 -178395527 + AT_rich Low_complexity Low_complexity 1 36 0 392 185 148 0 chr1 103798977 103799058 -178394606 - L2 LINE L2 -4 3309 3217 1877 167 6 3 chr1 103799064 103799393 -178394271 - MER7A DNA MER2_type -1 345 18 438 362 54 29 chr1 103799426 103799768 -178393896 - L2 LINE L2 -164 3149 2791 23 86 0 0 chr1 103799884 103799942 -178393722 + AT_rich Low_complexity Low_complexity 1 58 0 208 268 0 52 chr1 103800049 103800146 -178393518 + (CATA)n Simple_repeat Simple_repeat 3 94 0 283 253 48 0 chr1 103800203 103800286 -178393378 - L1MC/D LINE L1 -1982 5826 5740 2463 90 0 6 chr1 103800318 103800629 -178393035 + AluSx SINE Alu 1 309 -3 203 191 0 24 chr1 103800808 103800850 -178392814 + CT-rich Low_complexity Low_complexity 1 41 0 2125 134 3 0 chr1 103802033 103802325 -178391339 + AluSx SINE Alu 1 293 -19 234 62 0 0 chr1 103802456 103802488 -178391176 + (T)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr1 103802488 103802508 -178391156 + (G)n Simple_repeat Simple_repeat 1 20 0 324 209 35 12 chr1 103802621 103802707 -178390957 - FRAM/FAM SINE Alu -80 86 1 2023 109 13 48 chr1 103803007 103803318 -178390346 - AluSx SINE Alu -2 310 11 1961 141 24 0 chr1 103803456 103803627 -178390037 - AluSx SINE Alu -14 298 116 189 0 0 0 chr1 103803627 103803648 -178390016 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1961 141 24 0 chr1 103803648 103803767 -178389897 - AluSx SINE Alu -196 116 1 761 284 194 74 chr1 103803845 103804452 -178389212 + L2 LINE L2 1979 2512 -760 828 154 0 8 chr1 103804452 103804582 -178389082 + FLAM_A SINE Alu 3 131 -2 761 284 194 74 chr1 103804582 103804698 -178388966 + L2 LINE L2 2512 2613 -659 1846 169 24 6 chr1 103804698 103805036 -178388628 + MER2 DNA MER2_type 1 344 0 761 284 194 74 chr1 103805036 103805221 -178388443 + L2 LINE L2 2613 2774 -498 2461 81 0 7 chr1 103805221 103805528 -178388136 + AluSg SINE Alu 1 305 -5 761 284 194 74 chr1 103805528 103805581 -178388083 + L2 LINE L2 2774 3049 -223 196 250 15 59 chr1 103805588 103805656 -178388008 - L2 LINE L2 -2 3270 3206 751 208 16 11 chr1 103805656 103805839 -178387825 + L1ME3A LINE L1 5385 5568 -594 1355 215 69 28 chr1 103805841 103806264 -178387400 + L1ME3A LINE L1 5706 6145 -25 1842 146 0 48 chr1 103806278 103806594 -178387070 - AluJb SINE Alu -11 301 1 250 139 0 0 chr1 103807200 103807236 -178386428 - L1MC3 LINE L1 -1047 6738 6703 26 0 0 0 chr1 103807814 103807840 -178385824 + AT_rich Low_complexity Low_complexity 1 26 0 647 259 188 31 chr1 103808512 103809054 -178384610 + L2 LINE L2 2694 3298 -15 4746 106 1 0 chr1 103809442 103810141 -178383523 + L1P LINE L1 1 700 -5446 695 87 9 43 chr1 103810241 103810356 -178383308 - AluSq/x SINE Alu -202 111 1 3470 109 118 5 chr1 103810357 103810987 -178382677 + Tigger3(Golem) DNA MER2_type 2328 3028 -1 1638 194 13 10 chr1 103811337 103811647 -178382017 + AluJb SINE Alu 1 311 -1 597 194 82 51 chr1 103811724 103811852 -178381812 + MER105 DNA DNA 2 140 -64 2402 138 48 21 chr1 103811852 103812272 -178381392 + Tigger2a DNA MER2_type 1 431 -3 597 194 82 51 chr1 103812272 103812339 -178381325 + MER105 DNA DNA 140 203 -1 529 196 114 44 chr1 103812339 103812497 -178381167 - MIR SINE MIR -22 240 72 2114 94 10 17 chr1 103812818 103813115 -178380549 + AluSp SINE Alu 1 295 -18 21 0 0 31 chr1 103814487 103814499 -178379165 + AT_rich Low_complexity Low_complexity 1 12 -19 2307 75 3 7 chr1 103814499 103814791 -178378873 - AluY SINE Alu -20 291 1 21 0 0 31 chr1 103814791 103814810 -178378854 + AT_rich Low_complexity Low_complexity 12 31 0 720 206 52 0 chr1 103815076 103815231 -178378433 + AluSg/x SINE Alu 148 310 -2 597 291 66 47 chr1 103815236 103815658 -178378006 + L1MC4 LINE L1 7596 8025 -17 259 327 43 43 chr1 103817486 103817648 -178376016 - MER5B DNA MER1_type -16 162 1 432 226 9 9 chr1 103817717 103817823 -178375841 - MLT1K LTR MaLR -2 586 481 316 274 94 75 chr1 103818379 103818591 -178375073 - L1MC4 LINE L1 -1 8041 7826 22 35 0 0 chr1 103819703 103819732 -178373932 + AT_rich Low_complexity Low_complexity 1 29 0 2406 90 3 3 chr1 103820911 103821222 -178372442 - AluSx SINE Alu -1 311 1 225 230 0 68 chr1 103821338 103821412 -178372252 + CT-rich Low_complexity Low_complexity 4 72 0 861 172 18 35 chr1 103821698 103821867 -178371797 - FAM SINE Alu 0 49 1 2291 82 10 13 chr1 103821929 103822232 -178371432 - AluY SINE Alu -9 302 1 365 252 174 121 chr1 103822237 103822539 -178371125 - L1MEd LINE L1 -863 1627 1342 2204 27 0 0 chr1 103822539 103822797 -178370867 - L1PA2 LINE L1 -1 6154 5897 365 252 174 121 chr1 103822797 103823334 -178370330 - L1MEd LINE L1 -1148 1342 621 1762 185 0 37 chr1 103823462 103823786 -178369878 + AluJb SINE Alu 1 312 0 2308 79 10 7 chr1 103823991 103824281 -178369383 + AluSq SINE Alu 3 293 -20 389 169 0 0 chr1 103825326 103825397 -178368267 + L1MC4 LINE L1 6935 7005 -1037 1646 169 14 18 chr1 103826313 103826485 -178367179 - AluJb SINE Alu 0 305 133 2419 86 0 0 chr1 103826485 103826788 -178366876 - AluSg SINE Alu -7 303 1 1646 169 14 18 chr1 103826788 103826921 -178366743 - AluJb SINE Alu -172 133 1 543 313 66 11 chr1 103827515 103827697 -178365967 + MIR3 SINE MIR 10 201 -7 1712 168 3 37 chr1 103827875 103828196 -178365468 + AluJb SINE Alu 2 311 -1 22 0 0 0 chr1 103828748 103828770 -178364894 + AT_rich Low_complexity Low_complexity 1 22 0 11892 78 30 5 chr1 103828921 103830616 -178363048 + HERVL-A1 LTR ERVL 2 1737 -3917 * 18281 64 12 8 chr1 103830610 103833038 -178360626 + HERVL-A1 LTR ERVL 3209 5645 -9 1266 249 77 48 chr1 103833039 103833055 -178360609 + L1MCb LINE L1 1029 1043 -5702 2493 93 111 20 chr1 103833055 103833421 -178360243 + MLT2A1 LTR ERVL 1 409 -35 180 0 0 0 chr1 103833421 103833441 -178360223 + (TA)n Simple_repeat Simple_repeat 2 21 0 2493 93 111 20 chr1 103833441 103833481 -178360183 + MLT2A1 LTR ERVL 409 444 0 1266 249 77 48 chr1 103833481 103833614 -178360050 + L1MCb LINE L1 1043 1171 -5574 750 141 31 31 chr1 103833614 103833742 -178359922 + FLAM_C SINE Alu 2 129 -4 1266 249 77 48 chr1 103833742 103834037 -178359627 + L1MCb LINE L1 1171 1456 -5289 2292 104 3 7 chr1 103834037 103834345 -178359319 + AluSp SINE Alu 1 307 -6 1266 249 77 48 chr1 103834345 103835218 -178358446 + L1MCb LINE L1 1456 2586 -4159 316 118 0 0 chr1 103835283 103835334 -178358330 - Alu SINE Alu -4 296 246 963 168 43 57 chr1 103835434 103835643 -178358021 - AluSx SINE Alu -106 206 1 393 192 20 30 chr1 103835650 103835749 -178357915 - L1MB7 LINE L1 -11 6173 6076 2326 85 3 7 chr1 103835870 103836177 -178357487 + AluSg SINE Alu 1 306 -4 707 181 33 55 chr1 103836240 103836422 -178357242 + Charlie4 DNA MER1_type 1784 1961 0 347 290 188 23 chr1 103836428 103836604 -178357060 + L1ME3A LINE L1 5655 5859 -311 21 0 0 0 chr1 103836675 103836696 -178356968 + AT_rich Low_complexity Low_complexity 1 21 0 223 282 0 64 chr1 103837647 103837693 -178355971 - MER91C DNA MER1_type -32 108 67 1161 178 9 18 chr1 103837693 103837912 -178355752 + MER20 DNA MER1_type 3 219 0 223 282 0 64 chr1 103837912 103837943 -178355721 - MER91C DNA MER1_type -73 67 36 324 235 70 43 chr1 103838409 103838524 -178355140 - MIR SINE MIR 0 262 145 942 75 0 17 chr1 103838588 103838708 -178354956 + AluSq/x SINE Alu 1 118 -195 285 29 0 0 chr1 103838719 103838753 -178354911 + (A)n Simple_repeat Simple_repeat 1 34 0 219 216 0 0 chr1 103838828 103838865 -178354799 + MER91C DNA MER1_type 39 75 -115 440 78 13 52 chr1 103838866 103838943 -178354721 + MER20 DNA MER1_type 4 77 -142 187 266 101 25 chr1 103838946 103839025 -178354639 - MIR SINE MIR -133 129 45 347 202 0 53 chr1 103839188 103839282 -178354382 - MER5C DNA MER1_type 0 324 236 2937 181 61 14 chr1 103840067 103840687 -178352977 - L1MB7 LINE L1 -11 6173 5525 5891 96 21 4 chr1 103841056 103841822 -178351842 - L1PB1 LINE L1 -8 6143 5386 2298 84 3 7 chr1 103841822 103842120 -178351544 - AluSg1 SINE Alu -12 297 1 5891 96 21 4 chr1 103842120 103842601 -178351063 - L1PB1 LINE L1 -765 5386 4914 314 335 72 24 chr1 103843498 103843665 -178349999 - L3 LINE CR1 -13 1564 1390 42221 50 7 4 chr1 103843699 103849830 -178343834 - L1PA4 LINE L1 -1 6154 3 183 244 11 78 chr1 103849862 103849952 -178343712 - L3 LINE CR1 -281 1296 1213 1208 171 114 0 chr1 103850711 103850992 -178342672 + MER33 DNA MER1_type 12 324 0 2048 106 0 4 chr1 103851156 103851430 -178342234 + AluSx SINE Alu 29 301 -11 379 211 325 26 chr1 103852658 103852852 -178340812 - MIR SINE MIR -6 256 5 32 67 0 0 chr1 103852866 103852926 -178340738 + AT_rich Low_complexity Low_complexity 1 60 0 5587 97 51 2 chr1 103853708 103855240 -178338424 + L1PA8A LINE L1 4549 6131 0 2067 104 29 0 chr1 103855896 103856175 -178337489 + AluY SINE Alu 7 293 -18 1353 174 99 18 chr1 103857324 103857606 -178336058 - AluJo SINE Alu -7 305 1 719 238 44 34 chr1 103857974 103858294 -178335370 + L1MC4 LINE L1 7128 7450 -592 2383 215 104 68 chr1 103858413 103859402 -178334262 - L1M4 LINE L1 -2850 3296 2272 2182 148 39 26 chr1 103860707 103861234 -178332430 - L1M3 LINE L1 -499 5681 5146 185 0 40 0 chr1 103861247 103861272 -178332392 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1291 218 13 50 chr1 103861387 103861685 -178331979 + AluJo SINE Alu 5 291 -21 2400 138 50 27 chr1 103862357 103862893 -178330771 - L1MA8 LINE L1 -277 6021 5443 1887 146 46 6 chr1 103863237 103863560 -178330104 + MER1B DNA MER1_type 1 336 -1 220 211 0 0 chr1 103864522 103864574 -178329090 + (TA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr1 103864831 103864853 -178328811 + AT_rich Low_complexity Low_complexity 1 22 0 257 152 0 45 chr1 103864984 103865050 -178328614 + (TA)n Simple_repeat Simple_repeat 1 63 0 276 288 6 75 chr1 103865627 103865685 -178327979 + L2 LINE L2 3102 3162 -151 1120 86 62 0 chr1 103865685 103865847 -178327817 - L1PA14 LINE L1 0 6161 5990 276 288 6 75 chr1 103865847 103865948 -178327716 + L2 LINE L2 3162 3250 -63 382 155 0 0 chr1 103865978 103866036 -178327628 + AluS SINE Alu 231 288 -14 1844 163 0 0 chr1 103866036 103866313 -178327351 - AluJo SINE Alu -35 277 1 217 274 0 39 chr1 103866328 103866379 -178327285 + L2 LINE L2 3211 3259 -13 332 290 84 0 chr1 103866988 103867119 -178326545 + MIR SINE MIR 70 211 -51 608 119 0 0 chr1 103867330 103867414 -178326250 + AluS SINE Alu 1 84 -228 574 222 6 90 chr1 103867584 103867698 -178325966 - MIR SINE MIR 0 262 165 1687 171 6 29 chr1 103867698 103868014 -178325650 - AluJb SINE Alu -2 310 2 574 222 6 90 chr1 103868014 103868066 -178325598 - MIR SINE MIR -97 165 110 41867 53 8 3 chr1 103868511 103871825 -178321839 - L1PA4 LINE L1 0 6155 2799 2420 82 0 0 chr1 103871825 103872128 -178321536 - AluY SINE Alu -8 303 1 41867 53 8 3 chr1 103872128 103874938 -178318726 - L1PA4 LINE L1 -3356 2799 3 183 244 11 78 chr1 103874970 103875060 -178318604 - L3 LINE CR1 -281 1296 1213 1208 171 114 0 chr1 103875819 103876100 -178317564 + MER33 DNA MER1_type 12 324 0 2048 106 0 4 chr1 103876264 103876538 -178317126 + AluSx SINE Alu 29 301 -11 379 211 325 26 chr1 103877766 103877960 -178315704 - MIR SINE MIR -6 256 5 32 67 0 0 chr1 103877974 103878034 -178315630 + AT_rich Low_complexity Low_complexity 1 60 0 5566 98 51 2 chr1 103878816 103880348 -178313316 + L1PA8A LINE L1 4549 6131 0 2039 111 29 0 chr1 103881004 103881283 -178312381 + AluY SINE Alu 7 293 -18 1353 174 99 18 chr1 103882432 103882714 -178310950 - AluJo SINE Alu -7 305 1 683 244 44 34 chr1 103883082 103883402 -178310262 + L1MC4 LINE L1 7128 7450 -592 1537 101 22 38 chr1 103883593 103883860 -178309804 - AluSq SINE Alu -50 263 1 3304 172 45 22 chr1 103883861 103884261 -178309403 - L1MB4 LINE L1 -289 5891 5502 736 143 0 60 chr1 103884261 103884394 -178309270 - FLAM_C SINE Alu -8 125 1 3304 172 45 22 chr1 103884394 103884453 -178309211 - L1MB4 LINE L1 -678 5502 5446 2330 81 30 0 chr1 103884453 103884750 -178308914 - AluSg SINE Alu -4 306 1 3304 172 45 22 chr1 103884750 103885279 -178308385 - L1MB4 LINE L1 -734 5446 4884 345 234 64 21 chr1 103885639 103885733 -178307931 - MIR SINE MIR -27 235 138 * 474 288 39 7 chr1 103885729 103885882 -178307782 + MIR SINE MIR 102 259 -3 186 71 0 0 chr1 103886501 103886529 -178307135 + (A)n Simple_repeat Simple_repeat 1 28 0 1198 115 11 0 chr1 103886529 103886720 -178306944 + AluY SINE Alu 119 311 0 4112 186 36 40 chr1 103886729 103887851 -178305813 - L1MB5 LINE L1 -46 6128 5022 1690 179 21 3 chr1 103887851 103888141 -178305523 + AluJb SINE Alu 1 295 -17 4112 186 36 40 chr1 103888141 103888822 -178304842 - L1MB5 LINE L1 -1152 5022 4340 426 259 142 19 chr1 103888824 103889140 -178304524 - L1MEc LINE L1 -4002 2394 2040 747 302 106 32 chr1 103889141 103889518 -178304146 + L2 LINE L2 2895 3299 -14 1073 155 43 14 chr1 103889767 103889786 -178303878 + L1MB4 LINE L1 5595 5612 -688 3563 176 28 19 chr1 103889786 103889887 -178303777 + L1MB4 LINE L1 5430 5529 -651 2770 16 0 0 chr1 103889887 103890192 -178303472 + AluYa5 SINE Alu 1 305 -6 3563 176 28 19 chr1 103890192 103890834 -178302830 + L1MB4 LINE L1 5529 6180 0 1073 155 43 14 chr1 103890834 103891021 -178302643 + L1MB4 LINE L1 5612 5807 -493 902 358 28 10 chr1 103891025 103891607 -178302057 + L1PB4 LINE L1 24 890 -6319 310 338 9 33 chr1 103891853 103892063 -178301601 + L1PB4 LINE L1 1171 1375 -5834 6837 209 55 104 chr1 103892171 103894146 -178299518 + L1PB4 LINE L1 1359 3429 -3789 235 157 0 39 chr1 103894146 103894197 -178299467 + MER4D LTR ERV1 781 829 -74 6837 209 55 104 chr1 103894197 103895699 -178297965 + L1PB4 LINE L1 3429 5003 -2215 2013 165 7 0 chr1 103895699 103896008 -178297656 + AluJb SINE Alu 2 312 0 6837 209 55 104 chr1 103896008 103896019 -178297645 + L1PB4 LINE L1 5003 5013 -2205 1768 156 134 0 chr1 103896019 103896384 -178297280 - MSTA LTR MaLR -14 414 1 6837 209 55 104 chr1 103896384 103898549 -178295115 + L1PB4 LINE L1 5013 7213 -5 2471 113 24 12 chr1 103898547 103898961 -178294703 + L1MA6 LINE L1 5798 6216 -84 * 878 215 142 0 chr1 103899010 103899270 -178294394 + L1ME1 LINE L1 5865 6161 -5 1633 202 0 37 chr1 103902043 103902365 -178291299 - AluJo SINE Alu -2 310 1 2308 104 0 3 chr1 103903242 103903549 -178290115 + AluSc SINE Alu 1 306 -3 745 166 0 86 chr1 103904473 103904648 -178289016 + AluJo SINE Alu 1 160 -152 490 162 0 229 chr1 103904624 103904908 -178288756 + AluJb SINE Alu 71 289 -23 * 210 71 0 0 chr1 103904908 103904936 -178288728 + (GGGGA)n Simple_repeat Simple_repeat 2 29 0 1006 121 0 13 chr1 103905467 103905624 -178288040 + AluSc SINE Alu 142 296 -13 561 166 85 116 chr1 103905641 103905840 -178287824 - HAL1 LINE L1 -2314 193 1 242 296 56 24 chr1 103905837 103905962 -178287702 - HAL1 LINE L1 -2332 175 47 * 183 340 0 0 chr1 103906035 103906088 -178287576 - MIR3 SINE MIR -7 201 149 26 0 0 0 chr1 103906258 103906284 -178287380 + AT_rich Low_complexity Low_complexity 1 26 0 2268 94 0 10 chr1 103906293 103906592 -178287072 + AluSq SINE Alu 1 296 -17 3035 146 112 30 chr1 103906610 103906976 -178286688 + L1MB2 LINE L1 5417 5752 -419 2331 86 3 0 chr1 103906976 103907267 -178286397 + AluSx SINE Alu 1 292 -20 3035 146 112 30 chr1 103907267 103907594 -178286070 + L1MB2 LINE L1 5752 6167 -4 2046 211 154 37 chr1 103907615 103908487 -178285177 - L1MEd LINE L1 -2848 3281 2308 414 0 0 0 chr1 103908506 103908552 -178285112 + (CA)n Simple_repeat Simple_repeat 1 46 0 410 267 103 14 chr1 103908595 103908741 -178284923 - L1MEd LINE L1 -5960 159 1 1828 137 20 30 chr1 103908845 103909144 -178284520 - AluJb SINE Alu -16 296 1 1665 171 29 0 chr1 103909447 103909727 -178283937 + AluJo SINE Alu 11 298 -14 1016 205 96 46 chr1 103909857 103910208 -178283456 + MER57A LTR ERV1 50 399 -4 1692 151 16 26 chr1 103910349 103910653 -178283011 + AluJb SINE Alu 1 301 -11 1107 154 12 0 chr1 103910653 103910815 -178282849 + AluJb SINE Alu 134 297 -15 1127 183 114 24 chr1 103910962 103911252 -178282412 - MER2 DNA MER2_type -16 329 14 421 81 0 16 chr1 103911274 103911336 -178282328 - MLT1C LTR MaLR -4 463 403 1227 199 0 0 chr1 103911337 103911553 -178282111 + AluSx SINE Alu 1 216 -96 201 128 51 0 chr1 103912183 103912222 -178281442 + (TA)n Simple_repeat Simple_repeat 2 42 0 2878 56 36 5 chr1 103912226 103912618 -178281046 - MLT2A1 LTR ERVL -40 404 1 1229 225 22 38 chr1 103912618 103912987 -178280677 - L1MCc LINE L1 -4997 1426 1064 1831 158 10 17 chr1 103913121 103913419 -178280245 + AluJo SINE Alu 4 299 -13 2083 102 33 0 chr1 103913420 103913731 -178279933 + AluSq SINE Alu 1 320 0 2407 99 0 3 chr1 103914270 103914583 -178279081 - AluSx SINE Alu 0 312 1 225 230 0 68 chr1 103914699 103914773 -178278891 + CT-rich Low_complexity Low_complexity 4 72 0 861 172 18 35 chr1 103915059 103915228 -178278436 - FAM SINE Alu 0 49 1 2291 82 10 13 chr1 103915290 103915593 -178278071 - AluY SINE Alu -9 302 1 365 252 174 121 chr1 103915598 103915900 -178277764 - L1MEd LINE L1 -863 1627 1342 2204 27 0 0 chr1 103915900 103916158 -178277506 - L1PA2 LINE L1 -1 6154 5897 365 252 174 121 chr1 103916158 103916695 -178276969 - L1MEd LINE L1 -1148 1342 621 1762 182 0 37 chr1 103916823 103917147 -178276517 + AluJo SINE Alu 1 312 0 855 120 0 16 chr1 103917352 103917477 -178276187 + AluSq/x SINE Alu 3 125 -188 1044 125 24 6 chr1 103917943 103918111 -178275553 + L1PB4 LINE L1 5986 6156 0 1686 166 14 20 chr1 103918114 103918409 -178275255 + AluJb SINE Alu 1 293 -19 29 28 0 0 chr1 103918451 103918487 -178275177 + AT_rich Low_complexity Low_complexity 1 36 0 281 156 0 0 chr1 103918548 103918593 -178275071 + Alu SINE Alu 4 48 -251 1010 178 0 0 chr1 103918593 103918750 -178274914 + AluJo/FRAM SINE Alu 131 287 -25 23 0 0 0 chr1 103918751 103918774 -178274890 + AT_rich Low_complexity Low_complexity 1 23 0 771 225 25 0 chr1 103918782 103918942 -178274722 + FRAM SINE Alu 1 164 -2 962 104 0 15 chr1 103920350 103920484 -178273180 - FLAM_C SINE Alu 0 133 2 1450 183 0 73 chr1 103920925 103921225 -178272439 + AluJo SINE Alu 1 278 -34 383 0 0 21 chr1 103921228 103921276 -178272388 + (TAA)n Simple_repeat Simple_repeat 2 48 0 2142 188 118 18 chr1 103921817 103921931 -178271733 + MER44D DNA MER2_type 1 102 -2385 2222 112 0 3 chr1 103921931 103922234 -178271430 + AluSx SINE Alu 1 302 -10 2142 188 118 18 chr1 103922234 103922618 -178271046 + MER44D DNA MER2_type 102 604 -1 21 57 0 0 chr1 103922721 103922756 -178270908 + AT_rich Low_complexity Low_complexity 1 35 0 215 305 17 0 chr1 103922791 103922850 -178270814 + MIR SINE MIR 70 129 -133 2134 139 0 0 chr1 103922929 103923230 -178270434 + AluSx SINE Alu 1 301 -11 398 278 98 63 chr1 103923632 103923720 -178269944 + L2 LINE L2 1617 1700 -1614 1881 168 0 13 chr1 103923720 103924029 -178269635 + AluJb SINE Alu 1 305 -7 398 278 98 63 chr1 103924029 103924307 -178269357 + L2 LINE L2 1700 1996 -1318 239 205 18 108 chr1 103924323 103924489 -178269175 - L1ME4a LINE L1 -45 6076 5926 1580 196 86 52 chr1 103924636 103924735 -178268929 + MLT1D LTR MaLR 26 120 -385 2178 91 10 20 chr1 103924735 103925033 -178268631 + AluY SINE Alu 1 295 -16 1580 196 86 52 chr1 103925033 103925397 -178268267 + MLT1D LTR MaLR 120 505 0 397 256 48 48 chr1 103925417 103925594 -178268070 - L1ME4a LINE L1 -549 5810 5622 2236 83 14 3 chr1 103925640 103925930 -178267734 + AluSq SINE Alu 1 293 -20 355 284 77 26 chr1 103926299 103926454 -178267210 - MIR SINE MIR -47 215 53 1964 156 16 0 chr1 103926566 103926873 -178266791 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 103927108 103927131 -178266533 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1908 74 0 23 chr1 103927135 103927391 -178266273 - AluY SINE Alu -18 293 44 315 0 0 0 chr1 103928372 103928407 -178265257 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr1 103928790 103928812 -178264852 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr1 103929418 103929475 -178264189 + AT_rich Low_complexity Low_complexity 1 57 0 837 239 19 39 chr1 103929579 103929838 -178263826 + MER46C DNA MER2_type 20 273 -65 5550 109 19 2 chr1 103929947 103930800 -178262864 + L1MA3 LINE L1 5439 6305 0 1893 148 38 7 chr1 103931975 103932266 -178261398 + AluJb SINE Alu 3 302 -10 257 247 0 52 chr1 103932266 103932363 -178261301 + L1ME LINE L1 5572 5663 -458 10828 161 19 79 chr1 103932384 103936231 -178257433 + L1MA5 LINE L1 4 3623 -3544 1638 172 7 24 chr1 103936251 103936542 -178257122 + AluJb SINE Alu 1 286 -26 1481 193 4 30 chr1 103936549 103936814 -178256850 + AluJo SINE Alu 14 271 -41 2449 133 23 61 chr1 103936823 103937190 -178256474 + MSTB LTR MaLR 1 350 -76 1954 151 0 0 chr1 103937190 103937468 -178256196 - AluSx SINE Alu 0 312 35 2449 133 23 61 chr1 103937468 103937543 -178256121 + MSTB LTR MaLR 350 426 0 370 129 0 0 chr1 103937592 103937654 -178256010 + L1MA5 LINE L1 3879 3940 -3227 * 31298 38 2 1 chr1 103937652 103943795 -178249869 - L1PA4 LINE L1 -3 6152 2 11326 159 35 12 chr1 103943807 103945369 -178248295 + L1MA5 LINE L1 3947 5470 -1851 1837 164 0 39 chr1 103945369 103945679 -178247985 + AluJb SINE Alu 1 298 -14 11326 159 35 12 chr1 103945679 103947320 -178246344 + L1MA5 LINE L1 5470 7216 -105 530 272 123 6 chr1 103947418 103947580 -178246084 + MIR SINE MIR 2 182 -80 271 163 67 72 chr1 103947601 103947702 -178245962 - MLT1F LTR MaLR -1 548 449 1734 188 3 28 chr1 103947863 103948183 -178245481 - AluJo SINE Alu 0 312 1 227 234 178 19 chr1 103948227 103948319 -178245345 - MLT1I LTR MaLR -285 124 11 1139 204 9 13 chr1 103948319 103948544 -178245120 - MER58A DNA MER1_type 0 224 1 227 234 178 19 chr1 103948544 103948558 -178245106 - MLT1I LTR MaLR -398 11 1 341 229 42 0 chr1 103948562 103948658 -178245006 + MIR SINE MIR 163 262 0 728 173 0 24 chr1 103948837 103948964 -178244700 + FLAM_C SINE Alu 5 128 -5 1944 145 7 0 chr1 103948979 103949268 -178244396 - AluJo SINE Alu -21 291 1 315 256 128 76 chr1 103949268 103949440 -178244224 + L1ME4a LINE L1 5813 5993 -128 2040 108 50 0 chr1 103949663 103949941 -178243723 + AluSx SINE Alu 1 292 -20 1945 136 24 20 chr1 103950843 103951138 -178242526 - AluJo SINE Alu -8 304 9 582 236 198 69 chr1 103951448 103951927 -178241737 + MLT1F LTR MaLR 2 542 0 184 211 154 0 chr1 103952405 103952457 -178241207 + MIR3 SINE MIR 148 207 -1 346 252 134 0 chr1 103952637 103952764 -178240900 + L1ME3A LINE L1 5792 5935 -235 2405 96 0 0 chr1 103952909 103953212 -178240452 - AluSq SINE Alu -10 303 1 414 189 185 80 chr1 103953405 103953643 -178240021 - L1ME4a LINE L1 -2 6119 5857 189 0 0 0 chr1 103953970 103953991 -178239673 + (T)n Simple_repeat Simple_repeat 1 21 0 2194 70 59 0 chr1 103954121 103954408 -178239256 - AluSg SINE Alu -6 304 1 1923 116 0 14 chr1 103954415 103954724 -178238940 - AluSc SINE Alu 0 312 8 25 31 0 0 chr1 103954996 103955028 -178238636 + AT_rich Low_complexity Low_complexity 1 32 0 980 161 38 5 chr1 103955135 103955321 -178238343 - MER20 DNA MER1_type -27 192 1 456 191 25 38 chr1 103955965 103956122 -178237542 - L1MC5 LINE L1 -282 7679 7525 1491 175 0 74 chr1 103956123 103956287 -178237377 - AluJb SINE Alu -15 297 122 2088 117 0 23 chr1 103956287 103956462 -178237202 - AluSx SINE Alu -6 306 128 315 0 0 0 chr1 103956462 103956497 -178237167 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2306 46 7 3 chr1 103956497 103956779 -178236885 - AluY SINE Alu -28 283 1 2088 117 0 23 chr1 103956779 103956901 -178236763 - AluSx SINE Alu -182 130 15 1491 175 0 74 chr1 103956901 103957033 -178236631 - AluJb SINE Alu -190 122 23 851 192 0 67 chr1 103957041 103957296 -178236368 - L1MC5 LINE L1 -431 7530 7293 287 286 13 0 chr1 103957363 103957440 -178236224 - MIR SINE MIR -5 257 180 38 0 0 0 chr1 103959269 103959307 -178234357 + AT_rich Low_complexity Low_complexity 1 38 0 2200 132 10 0 chr1 103959579 103959883 -178233781 - AluSx SINE Alu -5 307 1 220 333 185 46 chr1 103960450 103960558 -178233106 - MIR SINE MIR -70 138 16 371 242 24 16 chr1 103960795 103960919 -178232745 + MER103 DNA DNA 4 128 -38 952 208 0 0 chr1 103961439 103961598 -178232066 + FRAM SINE Alu 1 156 -20 2352 103 0 0 chr1 103961685 103961985 -178231679 - AluSx SINE Alu -12 300 1 359 268 53 53 chr1 103962708 103962936 -178230728 + L1MCb LINE L1 945 1172 -4873 2214 135 0 6 chr1 103962936 103963248 -178230416 + AluSx SINE Alu 1 310 -2 2029 158 12 12 chr1 103963268 103963673 -178229991 + L1MB4 LINE L1 5570 5974 -206 471 246 80 55 chr1 103963737 103963853 -178229811 + L1MCb LINE L1 2372 2497 -4248 2300 115 3 0 chr1 103963853 103964165 -178229499 + AluSp SINE Alu 1 313 0 471 246 80 55 chr1 103964165 103964247 -178229417 + L1MCb LINE L1 2497 2575 -4170 1079 258 80 52 chr1 103964247 103964670 -178228994 - LTR16A LTR ERVL 0 450 16 367 288 47 24 chr1 103964683 103964792 -178228872 + L1MCb LINE L1 2529 2645 -3919 2212 96 3 3 chr1 103964792 103965085 -178228579 + AluSq SINE Alu 1 293 -20 367 288 47 24 chr1 103965085 103965145 -178228519 + L1MCb LINE L1 2645 2702 -3862 351 0 0 0 chr1 103965203 103965242 -178228422 + (TG)n Simple_repeat Simple_repeat 2 40 0 1878 151 11 0 chr1 103965861 103966165 -178227499 + AluJo SINE Alu 3 309 0 656 328 77 32 chr1 103966245 103966339 -178227325 - L2 LINE L2 -6 3307 3219 2308 105 0 0 chr1 103966339 103966634 -178227030 - AluSx SINE Alu -17 295 1 656 328 77 32 chr1 103966634 103966914 -178226750 - L2 LINE L2 -94 3219 2916 2086 132 0 0 chr1 103967512 103967817 -178225847 + AluSx SINE Alu 1 305 0 1005 84 0 0 chr1 103967964 103968095 -178225569 + AluSc SINE Alu 1 131 -178 459 240 203 22 chr1 103968102 103968300 -178225364 + MIR SINE MIR 31 262 0 1424 184 58 56 chr1 103968373 103968769 -178224895 - MLT2C1 LTR ERVL 0 397 1 2296 105 0 0 chr1 103968916 103969220 -178224444 + AluSx SINE Alu 1 304 -8 1670 188 0 3 chr1 103969938 103970226 -178223438 - AluJo SINE Alu -13 299 13 2196 131 0 7 chr1 103970255 103970560 -178223104 - AluSx SINE Alu -9 303 1 2188 102 10 19 chr1 103971233 103971547 -178222117 - AluSx SINE Alu -1 311 1 771 138 0 36 chr1 103971731 103971869 -178221795 - FLAM_C SINE Alu 0 133 1 314 252 175 0 chr1 103972067 103972170 -178221494 - L2 LINE L2 -15 3257 3137 475 160 30 0 chr1 103972209 103972309 -178221355 + MER53 DNA DNA 1 103 -86 1068 313 150 51 chr1 103972378 103973287 -178220377 - L2 LINE L2 -214 3058 2045 1568 139 13 4 chr1 103973287 103973524 -178220140 + AluJb SINE Alu 50 288 -24 1068 313 150 51 chr1 103973524 103973654 -178220010 - L2 LINE L2 -1227 2045 1929 2058 144 0 0 chr1 103973691 103973996 -178219668 + AluSx SINE Alu 1 305 -7 914 233 102 0 chr1 103974025 103974300 -178219364 + L1M4 LINE L1 3890 4192 -1954 1915 146 20 0 chr1 103974516 103974810 -178218854 - AluSx SINE Alu -12 300 1 568 256 105 12 chr1 103974938 103975110 -178218554 + MER5A DNA MER1_type 1 188 -1 1837 156 7 3 chr1 103975316 103975604 -178218060 + AluJo SINE Alu 1 289 -23 22 35 0 0 chr1 103976728 103976757 -178216907 + AT_rich Low_complexity Low_complexity 1 29 0 219 289 83 89 chr1 103976817 103976997 -178216667 - L2 LINE L2 -6 3266 3088 188 369 0 48 chr1 103977228 103977312 -178216352 - L2 LINE L2 0 3272 3193 877 261 22 18 chr1 103977461 103977687 -178215977 + MIR SINE MIR 12 238 -24 2281 109 0 3 chr1 103977695 103977997 -178215667 + AluSq SINE Alu 1 301 -12 365 281 15 0 chr1 103978313 103978448 -178215216 - L1ME3A LINE L1 -322 5848 5712 216 184 0 0 chr1 103978532 103978581 -178215083 + T-rich Low_complexity Low_complexity 4 52 0 2194 91 7 0 chr1 103978601 103978888 -178214776 + AluSp SINE Alu 1 289 -24 23 33 0 0 chr1 103978888 103978918 -178214746 + AT_rich Low_complexity Low_complexity 1 30 0 427 238 45 76 chr1 103979113 103979213 -178214451 - L1M4 LINE L1 -2842 3304 3202 1982 149 10 3 chr1 103979213 103979521 -178214143 - AluJb SINE Alu -2 310 1 427 238 45 76 chr1 103979521 103979602 -178214062 - L1M4 LINE L1 -2944 3202 3120 1644 170 34 27 chr1 103979602 103979896 -178213768 - AluJo SINE Alu -11 301 6 427 238 45 76 chr1 103979896 103980184 -178213480 - L1M4 LINE L1 -3026 3120 2849 730 269 120 8 chr1 103980882 103981116 -178212548 + MIR SINE MIR 2 261 -1 2033 163 0 0 chr1 103981134 103981435 -178212229 + AluJb SINE Alu 4 304 -8 298 304 74 0 chr1 103981512 103981647 -178212017 - HAL1b LINE L1 -701 647 503 268 271 163 8 chr1 103981647 103981776 -178211888 - MIR SINE MIR -1 261 113 648 258 72 48 chr1 103981778 103982239 -178211425 - HAL1b LINE L1 -851 497 26 1797 176 3 6 chr1 103982246 103982559 -178211105 - AluJo SINE Alu 0 312 1 2159 106 3 7 chr1 103982800 103983101 -178210563 - AluSp SINE Alu -13 300 1 2294 100 3 0 chr1 103983755 103984056 -178209608 - AluSx SINE Alu -10 302 1 250 321 25 12 chr1 103984182 103984263 -178209401 - MIR SINE MIR -161 101 20 1800 155 24 10 chr1 103984622 103984919 -178208745 - AluJb SINE Alu -11 301 1 318 323 65 69 chr1 103984995 103985050 -178208614 - L2 LINE L2 -34 3279 3225 1931 160 3 0 chr1 103985050 103985356 -178208308 + AluJo SINE Alu 3 309 -3 1917 137 3 64 chr1 103985363 103985505 -178208159 + AluJb SINE Alu 1 150 -162 1816 139 10 10 chr1 103985505 103985793 -178207871 + AluSx SINE Alu 1 288 -24 1917 137 3 64 chr1 103985793 103985979 -178207685 + AluJb SINE Alu 150 309 -3 318 323 65 69 chr1 103985979 103986045 -178207619 - L2 LINE L2 -94 3219 3154 183 80 0 0 chr1 103986045 103986070 -178207594 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 318 323 65 69 chr1 103986070 103986215 -178207449 - L2 LINE L2 -159 3154 3005 1133 279 100 22 chr1 103986531 103987065 -178206599 - L2 LINE L2 -24 3289 2716 473 258 43 25 chr1 103987162 103987281 -178206383 + MIR SINE MIR 91 215 -47 1642 212 0 3 chr1 103987281 103987573 -178206091 + AluJo SINE Alu 1 291 -21 473 258 43 25 chr1 103987573 103987616 -178206048 + MIR SINE MIR 215 256 -6 336 274 189 11 chr1 103988149 103988274 -178205390 + L1ME LINE L1 5525 5627 -494 1861 139 73 0 chr1 103988274 103988388 -178205276 + AluJb SINE Alu 1 105 -207 918 109 0 0 chr1 103988388 103988525 -178205139 + (TA)n Simple_repeat Simple_repeat 1 137 0 1861 139 73 0 chr1 103988525 103988697 -178204967 + AluJb SINE Alu 105 308 -4 336 274 189 11 chr1 103988697 103988746 -178204918 + L1ME LINE L1 5627 5730 -391 1369 151 67 3 chr1 103988844 103989128 -178204536 + L1MA5 LINE L1 5965 6266 -34 1396 141 12 123 chr1 103989305 103989470 -178204194 - AluJb SINE Alu -2 300 189 2244 83 17 3 chr1 103989470 103989760 -178203904 - AluSx SINE Alu -17 295 2 1396 141 12 123 chr1 103989760 103989927 -178203737 - AluJb SINE Alu -113 189 5 180 0 0 0 chr1 103990005 103990025 -178203639 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 103990036 103990057 -178203607 + AT_rich Low_complexity Low_complexity 1 21 0 2597 48 0 10 chr1 103990071 103990381 -178203283 + AluY SINE Alu 1 307 -4 960 122 0 8 chr1 103990589 103990720 -178202944 + AluJo SINE Alu 1 130 -172 36 0 0 0 chr1 103993602 103993638 -178200026 + AT_rich Low_complexity Low_complexity 1 36 0 2396 169 128 22 chr1 103993774 103994358 -178199306 + L1MA7 LINE L1 5603 6248 -43 1251 168 73 53 chr1 103995006 103995309 -178198355 + AluJo SINE Alu 1 309 -3 988 192 0 16 chr1 103995309 103995491 -178198173 + AluJo SINE Alu 134 312 0 2170 105 3 0 chr1 103995946 103996240 -178197424 - AluSx SINE Alu -17 295 1 275 276 92 11 chr1 103998674 103998761 -178194903 + MIR SINE MIR 52 145 -63 2178 113 0 23 chr1 103999638 103999947 -178193717 - AluSq SINE Alu -11 302 1 252 255 274 29 chr1 103999949 104000051 -178193613 - MER5A DNA MER1_type -4 185 59 322 229 42 17 chr1 104000092 104000251 -178193413 - MER3 DNA MER1_type 0 209 1 1193 174 104 8 chr1 104001208 104001449 -178192215 - AluJo SINE Alu -34 278 15 690 196 155 48 chr1 104002040 104002311 -178191353 - MER5C DNA MER1_type 0 324 25 477 0 0 0 chr1 104003489 104003542 -178190122 + (TTTTG)n Simple_repeat Simple_repeat 4 56 0 21 0 0 0 chr1 104003570 104003591 -178190073 + AT_rich Low_complexity Low_complexity 1 21 0 387 279 0 0 chr1 104004251 104004337 -178189327 - Zaphod DNA AcHobo 0 4031 3946 2379 77 7 0 chr1 104004357 104004656 -178189008 + AluSc SINE Alu 1 301 -8 855 150 0 0 chr1 104004667 104004794 -178188870 + AluJb SINE Alu 1 127 -185 259 254 0 30 chr1 104005016 104005083 -178188581 + L1MC4 LINE L1 7346 7410 -632 776 133 7 44 chr1 104005084 104005219 -178188445 + FLAM_C SINE Alu 14 143 0 2069 180 28 136 chr1 104005219 104005639 -178188025 + L1MC4 LINE L1 7396 7705 -337 2343 82 3 10 chr1 104005639 104005933 -178187731 - AluSp SINE Alu -21 292 1 2069 180 28 136 chr1 104005933 104006238 -178187426 + L1MC4 LINE L1 7705 8042 0 1716 185 7 7 chr1 104006248 104006551 -178187113 + AluJb SINE Alu 1 303 -9 2292 100 0 0 chr1 104006638 104006938 -178186726 + AluSg SINE Alu 1 300 -10 761 140 38 25 chr1 104006996 104007153 -178186511 + MLT1A1 LTR MaLR 160 318 -47 1224 102 51 113 chr1 104007339 104007613 -178186051 + L1MA8 LINE L1 6024 6280 -11 1413 189 14 44 chr1 104007744 104007925 -178185739 - AluJo SINE Alu -24 288 118 2487 74 0 0 chr1 104007925 104008224 -178185440 + AluY SINE Alu 1 299 -12 1413 189 14 44 chr1 104008224 104008339 -178185325 - AluJo SINE Alu -194 118 1 1638 175 10 14 chr1 104008345 104008636 -178185028 - AluJo SINE Alu -12 300 11 2438 76 7 0 chr1 104008739 104009043 -178184621 + AluY SINE Alu 1 306 -5 3172 179 61 136 chr1 104009043 104009320 -178184344 - Zaphod DNA AcHobo -173 3858 3562 771 107 0 0 chr1 104009320 104009423 -178184241 - AluJb SINE Alu -205 107 5 3172 179 61 136 chr1 104009423 104009666 -178183998 - Zaphod DNA AcHobo -469 3562 3302 2388 87 0 7 chr1 104009666 104009975 -178183689 - AluSc SINE Alu -2 307 1 3172 179 61 136 chr1 104009975 104010377 -178183287 - Zaphod DNA AcHobo -729 3302 2872 2206 95 0 14 chr1 104010377 104010671 -178182993 - AluSc SINE Alu -16 293 4 3172 179 61 136 chr1 104010671 104010700 -178182964 - Zaphod DNA AcHobo -1159 2872 2842 2104 126 0 3 chr1 104010700 104010993 -178182671 + AluJb SINE Alu 1 292 -20 3172 179 61 136 chr1 104010993 104011166 -178182498 - Zaphod DNA AcHobo -1189 2842 2721 1709 232 28 110 chr1 104011169 104011622 -178182042 - Zaphod DNA AcHobo -3511 520 120 2179 117 3 3 chr1 104011622 104011930 -178181734 - AluSg SINE Alu -2 308 1 1709 232 28 110 chr1 104011930 104012041 -178181623 - Zaphod DNA AcHobo -3911 120 2 913 201 6 0 chr1 104012111 104012275 -178181389 - FRAM SINE Alu -11 165 1 897 153 0 29 chr1 104012396 104012533 -178181131 + FLAM_C SINE Alu 1 133 0 880 163 0 0 chr1 104012537 104012672 -178180992 - AluSg/x SINE Alu -20 292 158 2435 79 7 0 chr1 104012881 104013186 -178180478 + AluSx SINE Alu 1 307 -5 2314 82 0 3 chr1 104013415 104013709 -178179955 + AluSg SINE Alu 1 293 -17 435 152 0 0 chr1 104013748 104013827 -178179837 + (TA)n Simple_repeat Simple_repeat 1 79 0 266 264 46 0 chr1 104013829 104013916 -178179748 + L1MC4 LINE L1 6613 6703 -1339 259 311 0 0 chr1 104013882 104013972 -178179692 - L1MC4 LINE L1 -1339 6703 6614 * 259 281 0 0 chr1 104013954 104014043 -178179621 + L1MC4 LINE L1 6614 6702 -1340 258 105 0 0 chr1 104014047 104014085 -178179579 + (TA)n Simple_repeat Simple_repeat 1 38 0 1457 252 151 26 chr1 104014684 104015451 -178178213 + L2 LINE L2 2443 3295 -18 229 281 0 0 chr1 104015510 104015574 -178178090 - MLT1G1 LTR MaLR 0 595 532 1802 160 24 3 chr1 104015578 104015866 -178177798 - AluJo SINE Alu -18 294 1 913 128 0 0 chr1 104015874 104015999 -178177665 - FLAM_C SINE Alu -18 125 1 1926 127 0 62 chr1 104016005 104016189 -178177475 - AluSx SINE Alu -9 303 146 2310 115 0 0 chr1 104016189 104016501 -178177163 - AluSx SINE Alu 0 312 1 1926 127 0 62 chr1 104016501 104016639 -178177025 - AluSx SINE Alu -166 146 1 203 0 0 36 chr1 104016656 104016684 -178176980 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 425 226 75 45 chr1 104018375 104018508 -178175156 + FLAM_C SINE Alu 1 137 -6 814 145 0 0 chr1 104019105 104019222 -178174442 + AluJb SINE Alu 1 117 -195 285 75 0 0 chr1 104019222 104019262 -178174402 + (CA)n Simple_repeat Simple_repeat 2 41 0 976 172 31 0 chr1 104019419 104019623 -178174041 + AluJb SINE Alu 117 325 0 2270 115 0 0 chr1 104019669 104019974 -178173690 + AluSx SINE Alu 1 305 -7 366 253 33 0 chr1 104020231 104020322 -178173342 + MIR SINE MIR 100 193 -69 1191 211 88 27 chr1 104020365 104020603 -178173061 - MSTD LTR MaLR 0 396 135 1798 171 0 13 chr1 104020603 104020737 -178172927 + AluJo SINE Alu 3 137 -175 1776 154 3 42 chr1 104020737 104021049 -178172615 + AluSx SINE Alu 1 300 -12 1798 171 0 13 chr1 104021049 104021213 -178172451 + AluJo SINE Alu 137 297 -15 1191 211 88 27 chr1 104021213 104021268 -178172396 - MSTD LTR MaLR -261 135 85 3883 172 25 31 chr1 104021281 104022327 -178171337 - L1MA6 LINE L1 -10 6290 5197 2267 109 0 0 chr1 104022327 104022621 -178171043 - AluSx SINE Alu -18 294 1 3883 172 25 31 chr1 104022621 104023048 -178170616 - L1MA6 LINE L1 -1103 5197 4769 768 251 30 0 chr1 104023051 104023254 -178170410 + L1M1 LINE L1 2517 2725 -4840 297 224 0 0 chr1 104023255 104023313 -178170351 - MSTD LTR MaLR -331 97 40 24 0 0 0 chr1 104023313 104023337 -178170327 + AT_rich Low_complexity Low_complexity 1 24 0 331 54 71 0 chr1 104023348 104023404 -178170260 + CT-rich Low_complexity Low_complexity 3 62 0 1913 159 13 0 chr1 104023416 104023724 -178169940 - AluJb SINE Alu 0 312 1 2067 38 0 0 chr1 104024263 104024500 -178169164 + AluY SINE Alu 67 303 -8 597 264 14 21 chr1 104024924 104025068 -178168596 + MIR SINE MIR 21 163 -99 2383 71 0 0 chr1 104025068 104025381 -178168283 + AluY SINE Alu 2 314 0 254 221 0 150 chr1 104025415 104025528 -178168136 + MIR SINE MIR 139 234 -28 2069 201 43 38 chr1 104025555 104025998 -178167666 + MLT2C2 LTR ERVL 1 445 -19 1306 159 43 0 chr1 104026919 104027127 -178166537 + AluJb SINE Alu 85 301 -11 2392 54 20 10 chr1 104027459 104027756 -178165908 + AluY SINE Alu 1 300 -11 1351 162 12 117 chr1 104027756 104028090 -178165574 + AluJo SINE Alu 4 302 0 2249 122 0 0 chr1 104028212 104028515 -178165149 - AluSx SINE Alu -9 303 1 1932 185 3 22 chr1 104028534 104028891 -178164773 - MLT1A1 LTR MaLR 0 365 16 2195 232 51 34 chr1 104028897 104029257 -178164407 + L2 LINE L2 1308 1683 -1631 2880 88 3 0 chr1 104029257 104029611 -178164053 - THE1A LTR MaLR 0 355 1 2195 232 51 34 chr1 104029611 104029837 -178163827 + L2 LINE L2 1683 1904 -1410 309 237 53 26 chr1 104029840 104029954 -178163710 + MER65A LTR ERV1 1 117 -328 799 229 20 0 chr1 104029965 104030118 -178163546 - AluJo SINE Alu -15 297 142 838 158 8 0 chr1 104030172 104030299 -178163365 - AluJo SINE Alu -179 133 6 264 118 274 0 chr1 104030642 104030693 -178162971 + L2 LINE L2 1903 1967 -1347 311 0 0 25 chr1 104030696 104030736 -178162928 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 749 181 17 0 chr1 104030736 104030852 -178162812 - FLAM_C SINE Alu -24 119 2 536 212 123 61 chr1 104030873 104031085 -178162579 + L2 LINE L2 1988 2212 -1102 2121 106 0 0 chr1 104031095 104031377 -178162287 + AluSx SINE Alu 1 282 -30 423 229 21 64 chr1 104031466 104031563 -178162101 + L1ME4a LINE L1 5942 6029 -92 872 213 30 0 chr1 104031563 104031727 -178161937 - FAM SINE Alu -6 169 1 423 229 21 64 chr1 104031727 104031817 -178161847 + L1ME4a LINE L1 6029 6121 0 285 29 0 0 chr1 104032113 104032147 -178161517 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 1589 152 52 11 chr1 104032149 104032418 -178161246 - AluJb SINE Alu -32 280 1 255 208 19 0 chr1 104032547 104032600 -178161064 + L1MC5 LINE L1 7730 7783 -178 2274 104 7 0 chr1 104032605 104032903 -178160761 + AluSx SINE Alu 1 300 -12 1199 176 0 0 chr1 104033010 104033198 -178160466 + MER5A DNA MER1_type 2 189 0 266 263 9 5 chr1 104033490 104033610 -178160054 + MER5A DNA MER1_type 18 189 0 351 317 147 36 chr1 104033614 104033751 -178159913 - L1MDa LINE L1 -4530 2010 1890 2313 115 0 6 chr1 104033751 104034065 -178159599 - AluSx SINE Alu 0 312 1 2513 62 3 0 chr1 104034075 104034383 -178159281 - AluY SINE Alu -2 309 1 351 317 147 36 chr1 104034383 104034540 -178159124 - L1MDa LINE L1 -4657 1883 1671 830 165 0 0 chr1 104034623 104034750 -178158914 + FLAM_C SINE Alu 1 127 -16 2256 98 3 25 chr1 104034769 104035084 -178158580 + AluSc SINE Alu 1 308 -1 2358 85 3 3 chr1 104035088 104035395 -178158269 + AluSx SINE Alu 2 308 -4 185 65 32 0 chr1 104035616 104035647 -178158017 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1799 160 24 0 chr1 104035832 104036119 -178157545 - AluJb SINE Alu -18 294 1 1520 101 9 18 chr1 104036127 104036346 -178157318 - AluSg/x SINE Alu -11 299 83 1287 81 0 0 chr1 104036348 104036509 -178157155 - AluSc SINE Alu -148 161 1 22 0 0 0 chr1 104036520 104036542 -178157122 + AT_rich Low_complexity Low_complexity 1 22 0 343 314 113 6 chr1 104036590 104036749 -178156915 + L2 LINE L2 3126 3301 -12 198 0 0 0 chr1 104036750 104036772 -178156892 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 326 222 74 46 chr1 104036844 104036952 -178156712 + MLT1I LTR MaLR 278 388 -21 719 142 9 0 chr1 104037172 104037278 -178156386 - FRAM SINE Alu -52 124 18 421 216 24 72 chr1 104037327 104037452 -178156212 - AluSq/x SINE Alu -162 151 33 912 204 97 193 chr1 104037456 104037745 -178155919 + L2 LINE L2 2396 2711 -602 231 238 0 0 chr1 104037745 104037787 -178155877 + Alu SINE Alu 135 176 -132 498 229 0 0 chr1 104037787 104037870 -178155794 + FAM SINE Alu 80 162 -23 327 25 0 0 chr1 104037870 104037910 -178155754 + (CA)n Simple_repeat Simple_repeat 2 41 0 912 204 97 193 chr1 104037910 104038184 -178155480 + L2 LINE L2 2709 3020 -293 1987 142 3 3 chr1 104038184 104038486 -178155178 - AluSq SINE Alu -11 302 1 912 204 97 193 chr1 104038486 104038537 -178155127 + L2 LINE L2 3020 3074 -239 923 132 0 0 chr1 104038544 104038673 -178154991 + AluJ SINE Alu 3 131 -181 855 186 66 0 chr1 104038720 104038887 -178154777 + AluJ SINE Alu 121 298 -14 4286 181 40 6 chr1 104039115 104039500 -178154164 - L1MB4 LINE L1 -7 6173 5803 1820 92 0 8 chr1 104039500 104039740 -178153924 - AluSg/x SINE Alu -10 302 65 4286 181 40 6 chr1 104039740 104040174 -178153490 - L1MB4 LINE L1 -377 5803 5326 383 167 0 45 chr1 104040186 104040252 -178153412 - AluJ/FRAM SINE Alu -12 290 228 * 1632 230 84 44 chr1 104040244 104040556 -178153108 - MLT1F LTR MaLR -74 468 133 2183 124 0 0 chr1 104040556 104040855 -178152809 - AluSx SINE Alu -13 299 1 1632 230 84 44 chr1 104040855 104040972 -178152692 - MLT1F LTR MaLR -409 133 22 223 303 61 0 chr1 104041020 104041086 -178152578 + L2 LINE L2 3244 3313 0 221 139 23 0 chr1 104041086 104041129 -178152535 + CT-rich Low_complexity Low_complexity 3 46 0 325 219 177 0 chr1 104041963 104042059 -178151605 + MIR SINE MIR 129 241 -21 747 195 0 0 chr1 104042085 104042208 -178151456 + FLAM_A SINE Alu 10 132 -10 416 124 31 10 chr1 104042589 104042686 -178150978 + GA-rich Low_complexity Low_complexity 2 100 0 240 321 156 0 chr1 104043639 104043748 -178149916 - MIR SINE MIR -81 181 56 245 340 53 0 chr1 104043861 104043955 -178149709 - MIR SINE MIR -60 202 104 1040 148 0 28 chr1 104044454 104044630 -178149034 - AluJb SINE Alu -8 304 134 945 128 83 69 chr1 104044845 104044978 -178148686 + MER3 DNA MER1_type 2 141 -68 1599 178 27 17 chr1 104044978 104045270 -178148394 - AluJo SINE Alu -17 295 1 945 128 83 69 chr1 104045270 104045340 -178148324 + MER3 DNA MER1_type 141 208 -1 2267 86 31 0 chr1 104045698 104045988 -178147676 + AluY SINE Alu 1 299 -12 521 167 0 22 chr1 104045988 104046078 -178147586 + FLAM_A SINE Alu 45 132 -10 543 321 49 24 chr1 104046203 104046449 -178147215 + MIR SINE MIR 9 260 -2 26 0 0 0 chr1 104046450 104046476 -178147188 + AT_rich Low_complexity Low_complexity 1 26 0 2181 121 3 0 chr1 104046480 104046785 -178146879 - AluSg SINE Alu -4 306 1 1964 121 3 24 chr1 104046789 104047112 -178146552 - AluSx SINE Alu 0 317 1 955 188 103 21 chr1 104047116 104047396 -178146268 - L1ME2 LINE L1 0 6164 5866 1824 166 3 29 chr1 104047536 104047850 -178145814 - AluJb SINE Alu -6 306 1 854 280 103 49 chr1 104048277 104048828 -178144836 - L2 LINE L2 -250 3063 2479 23 0 0 0 chr1 104049106 104049129 -178144535 + AT_rich Low_complexity Low_complexity 1 23 0 2220 82 0 38 chr1 104049187 104049502 -178144162 - AluSx SINE Alu -9 303 1 24 32 0 0 chr1 104050481 104050512 -178143152 + GC_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 104050547 104050571 -178143093 + GC_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr1 104051102 104051123 -178142541 + (TCTG)n Simple_repeat Simple_repeat 2 22 0 2309 85 10 3 chr1 104051451 104051767 -178141897 - AluSc SINE Alu 0 318 1 328 113 0 0 chr1 104051793 104051846 -178141818 - AluSx SINE Alu 0 300 248 1558 73 0 39 chr1 104051849 104052053 -178141611 - AluSx SINE Alu -116 196 1 251 107 223 125 chr1 104052130 104052178 -178141486 - L1ME3A LINE L1 -11 6159 6117 1909 156 0 3 chr1 104052178 104052480 -178141184 + AluJb SINE Alu 3 303 -9 251 107 223 125 chr1 104052480 104052543 -178141121 - L1ME3A LINE L1 -53 6117 6037 1234 208 100 101 chr1 104052544 104053019 -178140645 - L1ME2 LINE L1 -509 5653 5179 2272 104 3 0 chr1 104053019 104053318 -178140346 - AluSc SINE Alu -9 300 1 1993 142 3 22 chr1 104053318 104053629 -178140035 - AluJb SINE Alu -7 305 1 1234 208 100 101 chr1 104053629 104053788 -178139876 - L1ME2 LINE L1 -982 5180 5022 1575 161 65 21 chr1 104053788 104054067 -178139597 - AluJb SINE Alu -17 295 5 1234 208 100 101 chr1 104054067 104054146 -178139518 - L1ME2 LINE L1 -1140 5022 4944 2476 74 0 0 chr1 104054146 104054443 -178139221 + AluSg SINE Alu 1 297 -13 507 221 82 16 chr1 104054448 104054570 -178139094 - FLAM_C SINE Alu -3 130 1 1234 208 100 101 chr1 104054570 104054831 -178138833 - L1ME2 LINE L1 -1222 4940 4704 2070 146 64 14 chr1 104054955 104055312 -178138352 - THE1C LTR MaLR 0 375 1 285 292 18 95 chr1 104055361 104055529 -178138135 - HAL1 LINE L1 -2114 393 239 32 0 0 0 chr1 104055529 104055561 -178138103 + AT_rich Low_complexity Low_complexity 1 32 0 263 111 0 67 chr1 104055567 104055612 -178138052 - MER57A LTR ERV1 -67 336 295 893 222 70 33 chr1 104055690 104055761 -178137903 - HAL1 LINE L1 -1484 1023 956 1969 139 17 0 chr1 104055761 104056056 -178137608 - AluSx SINE Alu -12 300 1 893 222 70 33 chr1 104056056 104056227 -178137437 - HAL1 LINE L1 -1551 956 772 340 252 146 0 chr1 104056266 104056369 -178137295 + MER5B DNA MER1_type 1 118 -60 616 220 136 31 chr1 104056381 104056572 -178137092 - L1ME2 LINE L1 -6 6158 5948 351 164 0 0 chr1 104056572 104056627 -178137037 + MER5B DNA MER1_type 117 171 -7 1284 241 167 64 chr1 104056631 104057090 -178136574 - HAL1 LINE L1 -1761 746 193 2360 78 0 3 chr1 104057090 104057386 -178136278 + AluSc SINE Alu 1 295 -14 1284 241 167 64 chr1 104057386 104057602 -178136062 - HAL1 LINE L1 -2314 193 1 288 296 56 24 chr1 104057599 104057724 -178135940 - HAL1 LINE L1 -2332 175 47 * 26 0 0 0 chr1 104058020 104058046 -178135618 + AT_rich Low_complexity Low_complexity 1 26 0 2139 114 0 32 chr1 104058055 104058194 -178135470 + AluSx SINE Alu 1 143 -169 2581 54 3 0 chr1 104058194 104058492 -178135172 + AluY SINE Alu 1 299 -12 2139 114 0 32 chr1 104058492 104058660 -178135004 + AluSx SINE Alu 143 298 -14 2561 57 0 0 chr1 104059170 104059469 -178134195 - AluY SINE Alu -12 299 1 1932 146 52 54 chr1 104059570 104059854 -178133810 - MER7A DNA MER2_type -2692 346 64 2045 143 3 0 chr1 104059854 104060148 -178133516 - AluSx SINE Alu -15 297 3 1932 146 52 54 chr1 104060148 104060212 -178133452 - MER7A DNA MER2_type -2974 64 1 482 157 181 0 chr1 104061150 104061233 -178132431 + Tigger7 DNA MER2_type 1 98 -607 1927 160 0 19 chr1 104061241 104061553 -178132111 - AluJo SINE Alu -6 306 1 1044 178 79 5 chr1 104061635 104061837 -178131827 - AluJo SINE Alu -11 301 85 1419 197 94 34 chr1 104061839 104062081 -178131583 - L1ME2 LINE L1 -191 5973 5747 2150 97 38 0 chr1 104062081 104062370 -178131294 - AluSp SINE Alu -13 300 1 2212 112 0 10 chr1 104062371 104062675 -178130989 - AluSq SINE Alu -12 301 1 1419 197 94 34 chr1 104062675 104062811 -178130853 - L1ME2 LINE L1 -416 5748 5570 1319 80 0 0 chr1 104062818 104062981 -178130683 - AluY SINE Alu -148 163 1 2408 84 3 0 chr1 104063144 104063440 -178130224 + AluSg SINE Alu 1 297 -13 1293 99 0 6 chr1 104063526 104063697 -178129967 + AluSg/x SINE Alu 139 308 -4 200 326 83 7 chr1 104063777 104063921 -178129743 - L2 LINE L2 -812 2502 2348 200 312 116 11 chr1 104063952 104064141 -178129523 - L2 LINE L2 -1123 2191 1983 2018 120 38 0 chr1 104064181 104064472 -178129192 + AluSx SINE Alu 2 303 -9 2410 67 3 0 chr1 104064488 104064786 -178128878 - AluY SINE Alu -12 299 1 444 260 122 39 chr1 104064828 104065009 -178128655 + L1ME4a LINE L1 5615 5810 -1998 1772 196 86 52 chr1 104065029 104065393 -178128271 - MLT1D LTR MaLR 0 505 120 2186 91 10 20 chr1 104065393 104065691 -178127973 - AluY SINE Alu -16 295 1 1772 196 86 52 chr1 104065691 104065790 -178127874 - MLT1D LTR MaLR -385 120 26 307 205 18 108 chr1 104065937 104066103 -178127561 + L1ME4a LINE L1 5926 6076 -45 389 278 98 63 chr1 104066119 104066397 -178127267 - L2 LINE L2 -1318 1996 1700 1866 168 0 13 chr1 104066397 104066706 -178126958 - AluJb SINE Alu -7 305 1 389 278 98 63 chr1 104066706 104066794 -178126870 - L2 LINE L2 -1614 1700 1617 2118 139 0 0 chr1 104067196 104067497 -178126167 - AluSx SINE Alu -11 301 1 211 305 17 0 chr1 104067576 104067635 -178126029 - MIR SINE MIR -133 129 70 21 57 0 0 chr1 104067670 104067705 -178125959 + AT_rich Low_complexity Low_complexity 1 35 0 2369 180 118 18 chr1 104067808 104068192 -178125472 - MER44D DNA MER2_type -1883 604 102 2200 116 0 3 chr1 104068192 104068495 -178125169 - AluSx SINE Alu -10 302 1 2369 180 118 18 chr1 104068495 104068609 -178125055 - MER44D DNA MER2_type -2385 102 1 302 0 0 26 chr1 104069150 104069189 -178124475 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1455 173 0 73 chr1 104069192 104069492 -178124172 - AluJo SINE Alu -34 278 1 1021 104 0 15 chr1 104069932 104070066 -178123598 + FLAM_C SINE Alu 2 133 0 832 225 25 0 chr1 104071474 104071634 -178122030 - FRAM SINE Alu -2 164 1 23 0 0 0 chr1 104071642 104071665 -178121999 + AT_rich Low_complexity Low_complexity 1 23 0 1000 178 0 0 chr1 104071666 104071823 -178121841 - AluJo/FRAM SINE Alu -25 287 131 297 156 0 0 chr1 104071823 104071868 -178121796 - Alu SINE Alu -253 48 4 29 28 0 0 chr1 104071929 104071965 -178121699 + AT_rich Low_complexity Low_complexity 1 36 0 1663 166 14 20 chr1 104072007 104072302 -178121362 - AluJb SINE Alu -19 293 1 1129 125 24 6 chr1 104072305 104072473 -178121191 - L1PB4 LINE L1 0 6156 5986 515 228 187 29 chr1 104072801 104072972 -178120692 + MIR SINE MIR 58 255 -7 749 197 0 0 chr1 104073523 104073640 -178120024 + FLAM_A SINE Alu 8 124 -18 27 0 0 0 chr1 104074130 104074157 -178119507 + AT_rich Low_complexity Low_complexity 1 27 0 2477 62 0 7 chr1 104074206 104074511 -178119153 - AluY SINE Alu -8 303 1 2190 106 3 7 chr1 104074535 104074836 -178118828 - AluSx SINE Alu -12 300 1 2115 147 64 80 chr1 104075311 104075813 -178117851 + L1MB4 LINE L1 5680 6173 -7 1682 151 65 4 chr1 104076051 104076330 -178117334 - AluSx SINE Alu -16 296 1 2084 133 0 3 chr1 104076698 104076999 -178116665 - AluJb SINE Alu -12 300 1 416 248 26 0 chr1 104077236 104077353 -178116311 - L1ME LINE L1 -299 5822 5703 2181 122 0 19 chr1 104077354 104077666 -178115998 - AluSx SINE Alu -6 306 1 2042 142 0 7 chr1 104079850 104080160 -178113504 - AluSx SINE Alu -4 308 1 189 0 0 0 chr1 104080197 104080218 -178113446 + (A)n Simple_repeat Simple_repeat 1 21 0 2261 225 78 0 chr1 104080402 104080878 -178112786 + MLT1F LTR MaLR 1 513 -29 228 259 141 96 chr1 104080902 104081037 -178112627 + L2 LINE L2 3127 3267 -5 1308 172 59 50 chr1 104081603 104081923 -178111741 + MER33 DNA MER1_type 1 323 -1 258 81 0 0 chr1 104081928 104081965 -178111699 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 712 167 0 0 chr1 104081965 104082067 -178111597 - FLAM_C SINE Alu -29 114 13 383 389 69 27 chr1 104082113 104082445 -178111219 + L2 LINE L2 2925 3270 -2 587 175 26 26 chr1 104082451 104082565 -178111099 - LTR45 LTR ERV1 0 525 412 2544 225 80 62 chr1 104082732 104082808 -178110856 + HAL1 LINE L1 1327 1400 -1107 2178 99 0 14 chr1 104082808 104083092 -178110572 + AluSx SINE Alu 1 280 -32 2544 225 80 62 chr1 104083092 104083264 -178110400 + HAL1 LINE L1 1400 1567 -940 1952 128 3 14 chr1 104083264 104083554 -178110110 - AluSx SINE Alu -23 289 3 2544 225 80 62 chr1 104083554 104084112 -178109552 + HAL1 LINE L1 1567 2156 -351 2482 78 0 0 chr1 104084112 104084418 -178109246 - AluY SINE Alu -5 306 1 2544 225 80 62 chr1 104084418 104084552 -178109112 + HAL1 LINE L1 2156 2286 -221 354 232 84 103 chr1 104084972 104085352 -178108312 - L1MEd LINE L1 -5071 1048 676 182 133 0 22 chr1 104085658 104085703 -178107961 + (TA)n Simple_repeat Simple_repeat 1 44 0 269 306 0 24 chr1 104085713 104085798 -178107866 - L2 LINE L2 -5 3267 3185 2446 93 3 0 chr1 104086190 104086502 -178107162 - AluSp SINE Alu 0 313 1 1238 233 86 28 chr1 104086728 104087194 -178106470 - MLT1G3 LTR MaLR -1 529 20 1222 178 31 108 chr1 104087194 104087547 -178106117 + MLT1C LTR MaLR 1 397 -70 2269 123 0 0 chr1 104087547 104087855 -178105809 - AluSx SINE Alu -4 308 1 1222 178 31 108 chr1 104087855 104087918 -178105746 + MLT1C LTR MaLR 397 463 -4 1261 183 114 24 chr1 104087940 104088230 -178105434 + MER2 DNA MER2_type 14 329 -16 1096 154 12 0 chr1 104088377 104088539 -178105125 - AluJb SINE Alu -15 297 134 1674 155 16 26 chr1 104088539 104088843 -178104821 - AluJb SINE Alu -11 301 1 1196 202 111 80 chr1 104088984 104089371 -178104293 - MER57A LTR ERV1 -4 399 1 1643 171 29 0 chr1 104089465 104089745 -178103919 - AluJo SINE Alu -14 298 11 1818 137 20 30 chr1 104090048 104090347 -178103317 + AluJb SINE Alu 1 296 -16 465 267 103 14 chr1 104090451 104090597 -178103067 + L1MEd LINE L1 1 159 -5960 414 0 0 0 chr1 104090640 104090686 -178102978 + (TG)n Simple_repeat Simple_repeat 1 46 0 2261 208 113 50 chr1 104090694 104091575 -178102089 + L1MEd LINE L1 2299 3281 -2848 3890 137 72 71 chr1 104091596 104091923 -178101741 - L1MB3 LINE L1 -4 6179 5854 2339 86 3 0 chr1 104091923 104092214 -178101450 - AluSx SINE Alu -20 292 1 3890 137 72 71 chr1 104092214 104092598 -178101066 - L1MB3 LINE L1 -329 5854 5472 2295 101 0 0 chr1 104092598 104092894 -178100770 - AluSq SINE Alu -17 296 1 3890 137 72 71 chr1 104092894 104092926 -178100738 - L1MB3 LINE L1 -711 5472 5442 911 145 0 0 chr1 104092926 104093050 -178100614 + FLAM_A SINE Alu 1 124 -9 3890 137 72 71 chr1 104093050 104093467 -178100197 - L1MB3 LINE L1 -741 5442 4985 257 256 73 24 chr1 104093484 104093566 -178100098 + MIR SINE MIR 113 198 -64 858 242 75 9 chr1 104094014 104094241 -178099423 + MIR SINE MIR 11 252 -10 201 245 94 0 chr1 104094550 104094603 -178099061 + L2 LINE L2 3205 3262 -10 220 182 45 0 chr1 104094607 104094651 -178099013 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1424 162 53 0 chr1 104095675 104095940 -178097724 - L1MB7 LINE L1 -19 6165 5887 2340 89 0 3 chr1 104095992 104096295 -178097369 - AluSq SINE Alu -11 302 1 473 339 91 42 chr1 104097821 104098205 -178095459 - L3 LINE CR1 -12 1565 1163 263 234 65 0 chr1 104098236 104098313 -178095351 + MER112 DNA MER1_type 4 85 -175 369 130 37 31 chr1 104099423 104099584 -178094080 + (TTATA)n Simple_repeat Simple_repeat 4 165 0 251 93 47 35 chr1 104099624 104099710 -178093954 + (TA)n Simple_repeat Simple_repeat 1 87 0 412 267 69 0 chr1 104099779 104099823 -178093841 - L1MA10 LINE L1 -4 6330 6287 885 220 208 0 chr1 104099823 104100598 -178093066 - L1ME2 LINE L1 -49 6184 5228 685 93 0 0 chr1 104100722 104100819 -178092845 + AluY SINE Alu 208 304 -7 219 352 24 24 chr1 104101033 104101158 -178092506 + MIR3 SINE MIR 50 174 -34 530 269 116 12 chr1 104101197 104101462 -178092202 + MLT1I LTR MaLR 51 347 -62 1862 142 3 30 chr1 104101575 104101878 -178091786 + AluSx SINE Alu 3 297 -15 841 127 0 63 chr1 104102212 104102354 -178091310 - FLAM_C SINE Alu 0 133 1 2216 100 3 3 chr1 104102365 104102666 -178090998 - AluSg SINE Alu -9 301 1 3135 213 165 45 chr1 104103269 104103947 -178089717 - L1ME2 LINE L1 -971 5244 4649 1997 142 17 0 chr1 104103947 104104243 -178089421 - AluSx SINE Alu -11 301 1 3135 213 165 45 chr1 104104243 104104581 -178089083 - L1ME2 LINE L1 -1566 4649 4353 1575 190 33 20 chr1 104104581 104104881 -178088783 - AluJo SINE Alu -8 304 1 3135 213 165 45 chr1 104104881 104104905 -178088759 - L1ME2 LINE L1 -1862 4353 4333 1481 183 41 17 chr1 104104905 104105200 -178088464 - AluJb SINE Alu -9 303 2 3135 213 165 45 chr1 104105200 104105439 -178088225 - L1ME2 LINE L1 -1882 4333 3808 816 204 33 33 chr1 104105547 104105758 -178087906 - MER2 DNA MER2_type -134 211 1 4103 186 5 21 chr1 104105893 104106598 -178087066 - MER44D DNA MER2_type -1883 604 38 2198 112 0 22 chr1 104106598 104106910 -178086754 + AluSx SINE Alu 2 306 -6 4103 186 5 21 chr1 104106910 104106947 -178086717 - MER44D DNA MER2_type -2449 38 2 1060 261 95 5 chr1 104106956 104107258 -178086406 - L1ME2 LINE L1 -3546 2669 2319 1547 181 76 10 chr1 104107258 104107546 -178086118 - AluJo SINE Alu 0 312 6 1060 261 95 5 chr1 104107546 104107653 -178086011 - L1ME2 LINE L1 -3896 2319 2223 500 277 107 54 chr1 104107660 104107902 -178085762 - MLT1I LTR MaLR -62 347 93 1571 137 39 25 chr1 104107931 104108216 -178085448 - L1MB7 LINE L1 -42 6142 5854 4199 246 99 49 chr1 104108307 104109548 -178084116 - L1ME2 LINE L1 -4241 2155 783 1462 160 0 0 chr1 104109548 104109767 -178083897 - AluJb SINE Alu -16 296 78 4199 246 99 49 chr1 104109767 104110450 -178083214 - L1ME2 LINE L1 -5613 783 135 1772 172 0 0 chr1 104110464 104110743 -178082921 - AluJb SINE Alu -17 295 17 267 209 19 114 chr1 104110763 104110868 -178082796 - L1ME2 LINE L1 -6257 139 45 4593 168 63 33 chr1 104110913 104111952 -178081712 - MER11C LTR ERVK 0 1071 1 2025 50 0 4 chr1 104112710 104112968 -178080696 + L1PA4 LINE L1 5896 6152 -3 1185 124 163 0 chr1 104112978 104113211 -178080453 + L1MA8 LINE L1 6008 6278 -13 22 35 0 0 chr1 104113213 104113242 -178080422 + AT_rich Low_complexity Low_complexity 1 29 0 35064 88 19 27 chr1 104113606 104119792 -178073872 - L1PA6 LINE L1 -11 6143 11 2300 93 0 10 chr1 104119980 104120280 -178073384 + AluSx SINE Alu 5 301 -11 1630 200 0 3 chr1 104120399 104120684 -178072980 + AluJo SINE Alu 6 289 -23 2030 132 0 7 chr1 104121503 104121792 -178071872 - AluSx SINE Alu -25 287 1 654 225 99 24 chr1 104121985 104122198 -178071466 + MER33 DNA MER1_type 7 235 -89 595 156 83 0 chr1 104122198 104122307 -178071357 + FLAM_C SINE Alu 1 118 -25 24 67 0 0 chr1 104122320 104122365 -178071299 + AT_rich Low_complexity Low_complexity 1 45 0 260 211 14 14 chr1 104122367 104122438 -178071226 + MER33 DNA MER1_type 293 363 0 22 35 0 0 chr1 104122719 104122748 -178070916 + AT_rich Low_complexity Low_complexity 1 29 0 1460 201 93 0 chr1 104123148 104123482 -178070182 + MLT1A1 LTR MaLR 1 365 0 918 153 0 0 chr1 104123623 104123754 -178069910 - AluJb SINE Alu -22 290 160 317 374 11 11 chr1 104123957 104124136 -178069528 + L2 LINE L2 2197 2375 -939 1512 160 4 23 chr1 104124929 104125185 -178068479 - AluJb SINE Alu -21 291 41 438 203 44 121 chr1 104125935 104126117 -178067547 - L1ME2 LINE L1 -6 6158 5991 3708 195 74 18 chr1 104126151 104127235 -178066429 - L1MB7 LINE L1 -8 6176 5039 2032 217 87 26 chr1 104127232 104128076 -178065588 - L1ME2 LINE L1 -216 5950 5052 * 2527 61 10 0 chr1 104128076 104128386 -178065278 - AluSp SINE Alu 0 313 1 2032 217 87 26 chr1 104128386 104128453 -178065211 - L1ME2 LINE L1 -1114 5052 4990 24 53 0 0 chr1 104129069 104129107 -178064557 + AT_rich Low_complexity Low_complexity 1 38 0 195 241 138 0 chr1 104129616 104129674 -178063990 - MIR3 SINE MIR -28 180 115 438 248 46 147 chr1 104129733 104130040 -178063624 - Charlie8 DNA MER1_type -2101 316 41 31 44 0 0 chr1 104130397 104130442 -178063222 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chr1 104130945 104130980 -178062684 + AT_rich Low_complexity Low_complexity 1 35 0 1439 182 49 19 chr1 104130982 104131246 -178062418 - AluJo SINE Alu -40 272 1 180 203 136 17 chr1 104131541 104131600 -178062064 - L3 LINE CR1 -863 714 649 23 54 0 0 chr1 104131628 104131665 -178061999 + AT_rich Low_complexity Low_complexity 1 37 0 2404 87 0 0 chr1 104132462 104132762 -178060902 - AluSq SINE Alu -13 300 1 450 0 0 0 chr1 104132799 104132849 -178060815 + (TTTTA)n Simple_repeat Simple_repeat 5 54 0 410 266 150 6 chr1 104133824 104133997 -178059667 + MIR SINE MIR 36 233 -29 240 287 52 47 chr1 104133995 104134114 -178059550 - MIR3 SINE MIR -103 105 5 * 23 0 0 0 chr1 104134187 104134210 -178059454 + AT_rich Low_complexity Low_complexity 1 23 0 582 30 0 0 chr1 104134356 104134423 -178059241 + U4 snRNA snRNA 1 67 -78 200 297 0 31 chr1 104135078 104135142 -178058522 - MIR SINE MIR -111 97 36 1807 150 42 10 chr1 104135446 104135752 -178057912 + MER7A DNA MER2_type 14 327 -19 703 258 116 65 chr1 104135759 104136146 -178057518 - L2 LINE L2 -2880 434 28 1003 278 134 31 chr1 104136503 104137071 -178056593 + L2 LINE L2 2695 3313 0 191 36 36 0 chr1 104137821 104137849 -178055815 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr1 104137996 104138024 -178055640 + AT_rich Low_complexity Low_complexity 1 28 0 2250 69 0 17 chr1 104138219 104138537 -178055127 - AluY SINE Alu 0 313 1 261 93 70 0 chr1 104138539 104138582 -178055082 - L1MA5A LINE L1 -4 6293 6248 1640 167 3 87 chr1 104138634 104138957 -178054707 - AluJb SINE Alu -14 298 3 1872 175 0 3 chr1 104139059 104139356 -178054308 + AluJb SINE Alu 1 296 -16 688 224 36 61 chr1 104140095 104140291 -178053373 - MIR SINE MIR -57 205 15 789 254 26 10 chr1 104140607 104140800 -178052864 + MER58A DNA MER1_type 28 223 -1 2187 130 0 10 chr1 104141004 104141311 -178052353 - AluSx SINE Alu -8 304 1 1660 142 0 102 chr1 104141887 104142219 -178051445 - AluJo SINE Alu -12 300 3 717 189 0 38 chr1 104142602 104142734 -178050930 + FLAM_A SINE Alu 2 128 -5 392 347 82 30 chr1 104143804 104144135 -178049529 - L1MC4 LINE L1 0 8042 7695 296 286 79 30 chr1 104144200 104144607 -178049057 - L1MC5 LINE L1 -471 7490 7236 1693 181 20 23 chr1 104144641 104144940 -178048724 + AluJb SINE Alu 1 298 -14 1611 161 46 11 chr1 104145113 104145398 -178048266 + AluJo SINE Alu 1 295 -17 1664 189 0 20 chr1 104145622 104145918 -178047746 + AluJb SINE Alu 1 290 -22 371 257 28 0 chr1 104146127 104146236 -178047428 - L1P5 LINE L1 -690 5466 5355 631 272 4 67 chr1 104146598 104146852 -178046812 + Charlie2 DNA MER1_type 98 335 -2447 32562 78 8 7 chr1 104146902 104152069 -178041595 - L1PA5 LINE L1 -1 6153 826 579 226 72 11 chr1 104152139 104152320 -178041344 + Charlie2a DNA MER1_type 1472 1663 -1199 225 239 168 35 chr1 104152333 104152446 -178041218 + Charlie2a DNA MER1_type 2733 2860 -2 1871 110 85 11 chr1 104152529 104152811 -178040853 - AluSx SINE Alu -9 303 1 658 314 102 23 chr1 104152823 104153176 -178040488 - L2 LINE L2 -52 3261 2881 895 129 0 0 chr1 104153179 104153303 -178040361 + AluJb SINE Alu 1 124 -188 564 236 149 23 chr1 104153408 104153582 -178040082 - MER3 DNA MER1_type -4 205 10 307 231 149 32 chr1 104153592 104153762 -178039902 - L2 LINE L2 -278 2994 2627 3638 196 93 64 chr1 104153862 104154116 -178039548 - L1MC4 LINE L1 -63 7979 7734 549 52 39 0 chr1 104154116 104154193 -178039471 + MADE1 DNA Mariner 1 80 0 3638 196 93 64 chr1 104154193 104155079 -178038585 - L1MC4 LINE L1 -308 7734 6806 303 364 64 16 chr1 104155080 104155267 -178038397 - L2 LINE L2 -525 2789 2594 1402 113 20 116 chr1 104155290 104155591 -178038073 + L1MC3 LINE L1 7191 7462 -323 839 151 41 12 chr1 104155596 104155768 -178037896 + L1MC3 LINE L1 7601 7777 -8 234 275 88 0 chr1 104155858 104155938 -178037726 - MARNA DNA Mariner -91 495 409 2125 140 3 20 chr1 104155978 104156321 -178037343 - MER1B DNA MER1_type 0 337 1 195 286 242 0 chr1 104156369 104156460 -178037204 + MIR SINE MIR 84 196 -66 307 325 49 0 chr1 104156460 104156623 -178037041 - MARNA DNA Mariner -221 365 195 1584 150 4 4 chr1 104156782 104157035 -178036629 - AluJb SINE Alu -52 260 8 1787 148 3 0 chr1 104157074 104157358 -178036306 - L1PA16 LINE L1 -9 6157 5873 1318 194 94 6 chr1 104157359 104157678 -178035986 - L1MC4a LINE L1 -453 7355 7009 2549 71 0 0 chr1 104159306 104159616 -178034048 - AluY SINE Alu -1 310 1 1961 141 0 7 chr1 104159933 104160230 -178033434 - AluJb SINE Alu -17 295 1 3432 45 5 2 chr1 104160594 104161019 -178032645 - L1PA7 LINE L1 0 6154 5729 963 73 0 37 chr1 104161659 104161795 -178031869 + FLAM_C SINE Alu 1 131 -2 349 330 123 18 chr1 104162175 104162402 -178031262 - MIR SINE MIR -11 251 1 4473 263 157 24 chr1 104162554 104163196 -178030468 - L2 LINE L2 -5 3308 2753 1737 159 10 17 chr1 104163196 104163486 -178030178 + AluJo SINE Alu 11 298 -14 4473 263 157 24 chr1 104163486 104165021 -178028643 - L2 LINE L2 -560 2753 840 393 249 42 37 chr1 104165021 104165210 -178028454 - L1ME LINE L1 -362 5759 5570 2094 142 0 0 chr1 104165729 104166025 -178027639 - AluSx SINE Alu -16 296 1 249 376 124 11 chr1 104166192 104166370 -178027294 - MIR SINE MIR -62 200 3 2056 110 0 0 chr1 104167376 104167649 -178026015 + AluY SINE Alu 1 273 -38 1699 158 27 10 chr1 104167989 104168281 -178025383 - AluJb SINE Alu -15 297 1 235 158 18 18 chr1 104168597 104168654 -178025010 + CT-rich Low_complexity Low_complexity 1 57 0 1061 155 6 17 chr1 104269238 104269412 -177924252 + FAM SINE Alu 1 172 -3 1648 210 52 8 chr1 104269649 104270030 -177923634 + MLT1H1 LTR MaLR 158 555 0 353 244 70 35 chr1 104270033 104270148 -177923516 + MIR3 SINE MIR 85 203 -5 1536 172 16 59 chr1 104270218 104270363 -177923301 + AluJo SINE Alu 1 151 -161 1929 159 7 0 chr1 104270363 104270664 -177923000 + AluJb SINE Alu 1 303 -9 1536 172 16 59 chr1 104270664 104270838 -177922826 + AluJo SINE Alu 151 306 -6 372 301 16 40 chr1 104271950 104272135 -177921529 + MIR SINE MIR 13 192 -70 354 98 0 0 chr1 104272137 104272188 -177921476 + (TA)n Simple_repeat Simple_repeat 2 52 0 186 289 0 22 chr1 104272223 104272268 -177921396 + L2 LINE L2 3133 3176 -96 1160 56 6 0 chr1 104272457 104272619 -177921045 + L1PA8 LINE L1 5898 6060 -112 3293 42 5 2 chr1 104272620 104273027 -177920637 + L1PA7 LINE L1 5740 6147 -7 5031 81 15 20 chr1 104273601 104274106 -177919558 - L1MA2 LINE L1 0 6304 5803 2216 105 20 3 chr1 104274106 104274402 -177919262 + AluSc SINE Alu 1 301 -8 5031 81 15 20 chr1 104274402 104274649 -177919015 - L1MA2 LINE L1 -501 5803 5556 315 314 19 0 chr1 104274932 104275037 -177918627 - MIR SINE MIR 0 262 156 291 272 160 16 chr1 104275153 104275278 -177918386 - MIR SINE MIR -115 147 5 4767 173 57 11 chr1 104276253 104276712 -177916952 + L1MC2 LINE L1 5010 5446 -898 216 0 0 0 chr1 104276712 104276736 -177916928 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4767 173 57 11 chr1 104276736 104277550 -177916114 + L1MC2 LINE L1 5446 6342 -2 640 309 88 56 chr1 104277552 104277720 -177915944 - L2 LINE L2 -21 3292 3131 2081 112 3 17 chr1 104277720 104278016 -177915648 + AluSg SINE Alu 1 292 -18 414 0 0 0 chr1 104278025 104278071 -177915593 + (CA)n Simple_repeat Simple_repeat 2 47 0 640 309 88 56 chr1 104278071 104278506 -177915158 - L2 LINE L2 -189 3124 2664 1056 188 19 0 chr1 104278509 104278716 -177914948 - MER20 DNA MER1_type -3 216 6 315 332 52 37 chr1 104278720 104278991 -177914673 - L2 LINE L2 -645 2669 2395 270 122 0 0 chr1 104279099 104279140 -177914524 + MER57A LTR ERV1 295 335 -68 320 97 16 0 chr1 104279145 104279207 -177914457 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 276 239 31 92 chr1 104279260 104279414 -177914250 + MLT1G1 LTR MaLR 21 169 -386 2105 129 45 47 chr1 104279417 104279769 -177913895 + MSTA LTR MaLR 3 355 -73 1768 53 0 0 chr1 104279769 104279994 -177913670 - L1PA4 LINE L1 -2 6153 5929 2105 129 45 47 chr1 104279994 104280066 -177913598 + MSTA LTR MaLR 355 426 -2 876 234 112 94 chr1 104280091 104280475 -177913189 + MLT1G1 LTR MaLR 200 595 0 301 205 121 0 chr1 104280476 104280559 -177913105 + MIR SINE MIR 104 196 -66 595 256 77 29 chr1 104280711 104280918 -177912746 + L2 LINE L2 3097 3313 0 654 222 8 0 chr1 104280984 104281110 -177912554 - FLAM_A SINE Alu -6 127 1 521 217 117 8 chr1 104281569 104281689 -177911975 - FLAM_A SINE Alu 0 133 1 1464 173 94 0 chr1 104282183 104282576 -177911088 + L1M4 LINE L1 4974 5403 -743 905 186 86 5 chr1 104282585 104282795 -177910869 + LTR16A LTR ERVL 224 450 0 675 142 0 0 chr1 104283170 104283276 -177910388 + MER75 DNA T2_type 1 106 -408 2259 59 0 42 chr1 104283289 104283596 -177910068 - AluY SINE Alu 0 311 18 2446 93 5 78 chr1 104283732 104283797 -177909867 + MER75 DNA T2_type 95 163 -351 2059 125 0 10 chr1 104283797 104284092 -177909572 + AluSx SINE Alu 9 300 -12 2446 93 5 78 chr1 104284092 104284475 -177909189 + MER75 DNA T2_type 163 510 -4 1338 157 91 58 chr1 104285178 104285473 -177908191 - AluJo SINE Alu 0 304 1 516 241 21 48 chr1 104285859 104286004 -177907660 + MIR SINE MIR 117 257 -5 1832 80 0 8 chr1 104286218 104286455 -177907209 + AluY SINE Alu 70 304 -7 2091 145 0 0 chr1 104286705 104287002 -177906662 + AluSx SINE Alu 3 299 -13 781 189 0 0 chr1 104287205 104287337 -177906327 + AluSx SINE Alu 1 132 -180 230 93 0 47 chr1 104287339 104287382 -177906282 + MADE1 DNA Mariner 38 78 -2 1169 130 0 0 chr1 104287382 104287543 -177906121 + AluSx SINE Alu 123 283 -27 323 160 255 0 chr1 104288653 104288759 -177904905 - L1ME4a LINE L1 -3 6118 5986 971 128 7 0 chr1 104288779 104288928 -177904736 - Tigger3(Golem) DNA MER2_type -1 3028 2879 28 29 0 0 chr1 104289209 104289244 -177904420 + AT_rich Low_complexity Low_complexity 1 35 0 1855 160 3 3 chr1 104289328 104289616 -177904048 + AluJo SINE Alu 7 294 -18 3411 138 17 66 chr1 104289806 104290489 -177903175 + MER51A LTR ERV1 1 640 0 2250 62 0 46 chr1 104290812 104291119 -177902545 + AluY SINE Alu 1 293 -18 2167 105 20 0 chr1 104291615 104291919 -177901745 + AluSp SINE Alu 2 311 -2 1182 244 90 28 chr1 104291919 104292285 -177901379 + L1MC4a LINE L1 5356 5759 -2049 944 181 60 47 chr1 104292285 104292500 -177901164 - MER20 DNA MER1_type 0 219 2 1182 244 90 28 chr1 104292500 104292600 -177901064 + L1MC4a LINE L1 5759 5851 -1957 2158 102 7 13 chr1 104292714 104293018 -177900646 - AluSq SINE Alu -10 303 2 240 367 96 17 chr1 104293563 104293740 -177899924 - L2 LINE L2 -4 3268 3078 192 280 40 0 chr1 104293860 104293910 -177899754 + L2 LINE L2 3008 3059 -254 201 39 0 0 chr1 104294010 104294036 -177899628 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 532 279 61 0 chr1 104294055 104294220 -177899444 - MIR SINE MIR -80 182 8 1112 82 0 0 chr1 104294315 104294450 -177899214 + AluSq/x SINE Alu 1 135 -178 1561 113 129 16 chr1 104294450 104294586 -177899078 + AluSx SINE Alu 1 120 -192 2389 74 0 0 chr1 104294586 104294882 -177898782 + AluY SINE Alu 1 296 -15 1561 113 129 16 chr1 104294882 104294993 -177898671 + AluSx SINE Alu 120 276 -36 245 300 100 0 chr1 104295634 104295744 -177897920 - MIR SINE MIR -139 123 3 22 0 0 0 chr1 104296125 104296147 -177897517 + AT_rich Low_complexity Low_complexity 1 22 0 2015 116 14 14 chr1 104296276 104296569 -177897095 + AluSg SINE Alu 1 293 -17 411 21 0 0 chr1 104296631 104296679 -177896985 + (TG)n Simple_repeat Simple_repeat 1 48 0 2773 32 0 6 chr1 104296994 104297307 -177896357 - AluY SINE Alu 0 311 1 1611 132 78 68 chr1 104297311 104297607 -177896057 - AluSq SINE Alu -14 299 1 265 284 65 115 chr1 104297678 104297777 -177895887 + L2 LINE L2 2827 2929 -343 1463 171 94 7 chr1 104297777 104298064 -177895600 - AluJb SINE Alu 0 312 1 265 284 65 115 chr1 104298064 104298348 -177895316 + L2 LINE L2 2929 3191 -81 1894 151 0 16 chr1 104299107 104299411 -177894253 - AluJb SINE Alu -13 299 1 924 224 6 6 chr1 104299461 104299635 -177894029 + FAM SINE Alu 1 174 -1 966 161 0 6 chr1 104299719 104299887 -177893777 + L1MB8 LINE L1 5707 5873 -311 533 253 0 0 chr1 104299889 104299984 -177893680 + AluJ/FLAM SINE Alu 2 96 -216 393 175 0 0 chr1 104299987 104300050 -177893614 - AluSp SINE Alu -110 193 131 837 161 0 7 chr1 104300057 104300200 -177893464 + L1MB8 LINE L1 6031 6172 -6 4818 192 43 11 chr1 104300204 104301129 -177892535 - MER45B DNA AcHobo -85 955 1 2871 6 0 3 chr1 104301887 104302199 -177891465 + AluYa5 SINE Alu 1 311 0 2390 88 0 0 chr1 104303331 104303626 -177890038 + AluSc SINE Alu 1 295 -14 350 326 64 52 chr1 104303760 104303993 -177889671 + L3 LINE CR1 398 633 -944 1564 174 4 15 chr1 104304119 104304383 -177889281 - AluJo SINE Alu -51 261 1 2204 111 0 7 chr1 104304575 104304873 -177888791 - AluSq SINE Alu -17 296 1 787 277 16 27 chr1 104304873 104305129 -177888535 - MIR SINE MIR 0 262 10 267 155 28 14 chr1 104305822 104305893 -177887771 + (TA)n Simple_repeat Simple_repeat 1 72 0 825 288 35 31 chr1 104306826 104307391 -177886273 + ERVL LTR ERVL 3960 4530 -1124 709 47 0 0 chr1 104307430 104307516 -177886148 + HY3 scRNA scRNA 15 100 -1 1637 161 11 7 chr1 104307623 104307903 -177885761 + MLT1B LTR MaLR 1 281 -109 1514 58 5 0 chr1 104308067 104308256 -177885408 - AluY SINE Alu -2 309 120 2228 66 4 0 chr1 104308403 104308675 -177884989 - AluY SINE Alu -38 273 1 787 145 22 106 chr1 104308794 104308973 -177884691 - 7SK RNA RNA -29 164 1 916 76 8 0 chr1 104308973 104309091 -177884573 + MLT1B LTR MaLR 272 390 0 246 289 106 24 chr1 104309145 104309302 -177884362 - MIR SINE MIR -69 193 21 252 319 96 15 chr1 104309302 104309437 -177884227 + L2 LINE L2 2716 2861 -453 228 404 18 9 chr1 104309520 104309634 -177884030 + L2 LINE L2 2944 3058 -214 225 273 15 15 chr1 104309695 104309761 -177883903 + MIR SINE MIR 7 72 -190 218 235 113 70 chr1 104309764 104309879 -177883785 - L2 LINE L2 -5 3308 3189 411 221 96 32 chr1 104309953 104310111 -177883553 + MIR SINE MIR 94 259 -3 183 265 82 71 chr1 104310088 104310186 -177883478 + L2 LINE L2 3108 3206 -66 * 2264 102 0 7 chr1 104310347 104310650 -177883014 + AluSx SINE Alu 1 301 -11 1609 129 25 0 chr1 104310769 104311010 -177882654 + AluSx SINE Alu 60 306 -6 306 0 0 0 chr1 104311367 104311401 -177882263 + (CA)n Simple_repeat Simple_repeat 1 34 0 2208 125 3 3 chr1 104311954 104312266 -177881398 - AluJb SINE Alu 0 312 1 431 236 128 6 chr1 104312586 104312746 -177880918 - MIR3 SINE MIR -16 192 13 22 35 0 0 chr1 104313121 104313150 -177880514 + AT_rich Low_complexity Low_complexity 1 29 0 831 265 100 4 chr1 104313583 104313822 -177879842 + MIR SINE MIR 6 257 -5 187 206 0 0 chr1 104313898 104313932 -177879732 + MIR SINE MIR 90 123 -139 1342 157 0 42 chr1 104313953 104314214 -177879450 + AluJb SINE Alu 1 250 -62 4709 170 22 19 chr1 104314330 104314989 -177878675 - L1MC3 LINE L1 -536 7249 6585 1553 182 10 17 chr1 104314989 104315280 -177878384 + AluJo SINE Alu 1 289 -23 4709 170 22 19 chr1 104315280 104315526 -177878138 - L1MC3 LINE L1 -1200 6585 6341 6018 109 23 12 chr1 104315546 104316006 -177877658 - L1PB3 LINE L1 -2 6152 5699 183 42 0 0 chr1 104316006 104316030 -177877634 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2048 126 0 14 chr1 104316030 104316315 -177877349 - AluSx SINE Alu -31 281 1 6018 109 23 12 chr1 104316315 104316878 -177876786 - L1PB3 LINE L1 -454 5700 5116 2356 169 24 98 chr1 104316900 104317455 -177876209 - L1MC3 LINE L1 -1447 6338 5836 2322 84 7 7 chr1 104317455 104317752 -177875912 - AluSx SINE Alu -15 297 1 2356 169 24 98 chr1 104317752 104317837 -177875827 - L1MC3 LINE L1 -1949 5836 5746 187 197 164 49 chr1 104318275 104318336 -177875328 - MIR SINE MIR -20 242 175 1050 226 189 60 chr1 104319606 104319705 -177873959 + MLT1J LTR MaLR 1 86 -425 2223 128 0 0 chr1 104319705 104320009 -177873655 + AluSq SINE Alu 1 304 -9 1050 226 189 60 chr1 104320009 104320360 -177873304 + MLT1J LTR MaLR 86 509 -2 1311 172 9 18 chr1 104320721 104320942 -177872722 + MER20 DNA MER1_type 1 219 0 241 358 0 0 chr1 104322019 104322100 -177871564 - L2 LINE L2 -5 3308 3228 249 287 69 26 chr1 104322426 104322542 -177871122 - L1MC3 LINE L1 -359 5762 5643 1906 143 23 10 chr1 104322750 104323050 -177870614 + AluJo SINE Alu 3 306 -6 2313 167 58 15 chr1 104323542 104323688 -177869976 - L1MB7 LINE L1 -14 6170 6032 2148 120 3 0 chr1 104323688 104323988 -177869676 + AluSx SINE Alu 1 301 -11 2313 167 58 15 chr1 104323988 104324303 -177869361 - L1MB7 LINE L1 -152 6032 5689 2226 60 18 14 chr1 104324330 104324642 -177869022 - AluY SINE Alu 0 313 1 694 134 0 45 chr1 104324664 104324746 -177868918 - U6 snRNA snRNA 0 107 30 10025 82 19 10 chr1 104324746 104326020 -177867644 + HSMAR1 DNA Mariner 1 1285 -2 694 134 0 45 chr1 104326020 104326049 -177867615 - U6 snRNA snRNA -77 30 1 478 189 0 21 chr1 104326049 104326144 -177867520 - L1MB7 LINE L1 -490 5694 5602 493 174 35 52 chr1 104326163 104326278 -177867386 - L1MC1 LINE L1 -9 6324 6212 406 259 94 125 chr1 104326455 104327030 -177866634 - MLT1K LTR MaLR -30 558 2 2206 115 7 0 chr1 104327115 104327410 -177866254 - AluSx SINE Alu -15 297 1 2429 88 0 0 chr1 104327836 104328144 -177865520 - AluSg SINE Alu -2 308 1 2095 131 7 0 chr1 104328559 104328857 -177864807 + AluSx SINE Alu 1 300 -12 1148 143 0 0 chr1 104328861 104329022 -177864642 + AluJb SINE Alu 138 298 -14 219 175 0 0 chr1 104329146 104329203 -177864461 + GA-rich Low_complexity Low_complexity 2 58 0 382 196 18 45 chr1 104329275 104329387 -177864277 + L1ME4a LINE L1 5966 6074 -47 205 149 43 0 chr1 104329392 104329439 -177864225 + A-rich Low_complexity Low_complexity 4 52 0 353 208 66 85 chr1 104329944 104330050 -177863614 + L2 LINE L2 3210 3313 0 557 183 0 42 chr1 104330280 104330400 -177863264 + L1MA9 LINE L1 5916 6030 -282 487 258 55 12 chr1 104330396 104330559 -177863105 + L1MA10 LINE L1 6165 6334 0 * 263 242 144 77 chr1 104330756 104330950 -177862714 - L2 LINE L2 -406 2908 2702 21 0 0 0 chr1 104330950 104330971 -177862693 + AT_rich Low_complexity Low_complexity 1 21 0 2141 116 0 3 chr1 104330972 104331264 -177862400 + AluSc SINE Alu 1 291 -18 404 127 0 0 chr1 104331277 104331361 -177862303 - AluJ/FRAM SINE Alu 0 311 228 824 81 0 9 chr1 104331463 104331574 -177862090 + AluSg/x SINE Alu 183 292 -18 1963 126 0 18 chr1 104331587 104331898 -177861766 - AluJo SINE Alu 0 307 2 412 281 124 67 chr1 104331900 104332167 -177861497 - L2 LINE L2 -602 2712 2431 * 551 286 79 22 chr1 104332135 104332464 -177861200 - L2 LINE L2 -213 3059 2713 703 258 220 43 chr1 104332873 104333292 -177860372 - LTR33 LTR ERVL -16 505 13 849 143 0 41 chr1 104333379 104333526 -177860138 - FLAM_C SINE Alu -2 141 1 602 155 17 17 chr1 104333652 104333768 -177859896 - L1MA7 LINE L1 -12 6279 6164 1676 172 4 7 chr1 104335646 104335925 -177857739 + AluJo SINE Alu 14 291 -21 580 278 116 20 chr1 104337701 104337899 -177855765 + MIR SINE MIR 12 228 -34 2275 95 3 0 chr1 104338501 104338805 -177854859 + AluSx SINE Alu 1 305 -7 634 133 0 0 chr1 104340704 104340787 -177852877 - AluS SINE Alu -229 84 2 1538 296 74 21 chr1 104340797 104341866 -177851798 - ERVL LTR ERVL -1216 4548 3380 2754 311 49 35 chr1 104341875 104343254 -177850410 + HERVL LTR ERVL 2778 4174 -1480 978 298 71 34 chr1 104343261 104343676 -177849988 + HERVL LTR ERVL 3898 4633 -710 962 169 257 56 chr1 104343765 104344014 -177849650 - AluJo SINE Alu -2 300 2 786 229 14 0 chr1 104344668 104344812 -177848852 + FRAM SINE Alu 1 146 -30 951 119 24 0 chr1 104345022 104345148 -177848516 + FLAM_A SINE Alu 5 133 0 5313 208 39 56 chr1 104345151 104346323 -177847341 + L1ME1 LINE L1 3071 4261 -1905 1861 172 0 35 chr1 104346323 104346642 -177847022 + AluJo SINE Alu 1 308 -4 5313 208 39 56 chr1 104346642 104347244 -177846420 + L1ME1 LINE L1 4261 4872 -1294 1672 187 19 32 chr1 104347244 104347623 -177846041 + MLT1A2 LTR MaLR 1 374 0 5313 208 39 56 chr1 104347623 104347929 -177845735 + L1ME1 LINE L1 4872 5182 -984 1846 176 0 0 chr1 104347929 104348224 -177845440 + AluJo SINE Alu 3 297 -15 2082 89 4 4 chr1 104348226 104348530 -177845134 + AluSg SINE Alu 1 304 0 5313 208 39 56 chr1 104348530 104349499 -177844165 + L1ME1 LINE L1 5183 6162 -4 463 195 85 25 chr1 104349671 104349789 -177843875 - MLT1J LTR MaLR 0 511 387 2266 122 0 0 chr1 104349831 104350134 -177843530 - AluSx SINE Alu -9 303 1 3394 76 14 12 chr1 104350135 104350480 -177843184 - Tigger1 DNA MER2_type -332 2086 1738 2358 97 3 0 chr1 104350480 104350779 -177842885 - AluSp SINE Alu -13 300 1 3394 76 14 12 chr1 104350779 104350932 -177842732 - Tigger1 DNA MER2_type -680 1738 1587 873 168 60 7 chr1 104350935 104351084 -177842580 - FAM SINE Alu -20 165 9 8700 117 35 57 chr1 104351088 104351254 -177842410 - Tigger1 DNA MER2_type -824 1594 1426 1850 147 42 0 chr1 104351254 104351540 -177842124 - AluJb SINE Alu -14 298 1 8700 117 35 57 chr1 104351540 104352012 -177841652 - Tigger1 DNA MER2_type -992 1426 945 1920 182 0 3 chr1 104352012 104352325 -177841339 + AluJb SINE Alu 1 312 0 8700 117 35 57 chr1 104352325 104352381 -177841283 - Tigger1 DNA MER2_type -1473 945 889 1915 148 0 0 chr1 104352381 104352688 -177840976 + AluSq SINE Alu 1 307 0 8700 117 35 57 chr1 104352688 104353597 -177840067 - Tigger1 DNA MER2_type -1529 889 23 1830 178 7 3 chr1 104353815 104354124 -177839540 + AluJb SINE Alu 1 310 -2 334 336 82 29 chr1 104354124 104354202 -177839462 + L1MC/D LINE L1 5505 5577 -2231 1049 169 46 59 chr1 104354202 104354439 -177839225 + MER46A DNA MER2_type 2 235 -1 334 336 82 29 chr1 104354439 104354633 -177839031 + L1MC/D LINE L1 5577 5795 -2013 21 0 0 0 chr1 104354636 104354657 -177839007 + AT_rich Low_complexity Low_complexity 1 21 0 1551 152 49 0 chr1 104354716 104354960 -177838704 + AluSx SINE Alu 45 300 -12 198 71 0 0 chr1 104355214 104355242 -177838422 + (CA)n Simple_repeat Simple_repeat 2 29 0 2617 48 0 6 chr1 104355685 104355998 -177837666 + AluY SINE Alu 1 311 0 1191 128 0 0 chr1 104356847 104357003 -177836661 + AluSx SINE Alu 1 156 -156 1318 98 167 0 chr1 104357011 104357215 -177836449 + AluSg/x SINE Alu 72 309 -1 762 192 0 8 chr1 104357284 104357414 -177836250 + FLAM_A SINE Alu 1 129 -4 1066 246 126 35 chr1 104357419 104357903 -177835761 + MER34 LTR ERV1 15 542 0 656 339 54 58 chr1 104358030 104358496 -177835168 - L2 LINE L2 0 3272 2809 2233 55 0 92 chr1 104358643 104358970 -177834694 + AluY SINE Alu 1 297 -14 1437 159 7 30 chr1 104359085 104359355 -177834309 + 7SLRNA srpRNA srpRNA 4 267 -53 854 193 6 30 chr1 104359470 104359636 -177834028 + FRAM SINE Alu 1 156 -20 2203 92 0 7 chr1 104359638 104359995 -177833669 + AluSg SINE Alu 1 355 0 570 282 44 28 chr1 104360120 104360301 -177833363 - MIR SINE MIR -50 212 29 2507 140 35 17 chr1 104360932 104361411 -177832253 + L1MC1 LINE L1 5742 6229 -104 2491 84 0 0 chr1 104361412 104362079 -177831585 + AluY SINE Alu 1 667 0 605 149 0 0 chr1 104362079 104362173 -177831491 + L1MC1 LINE L1 6222 6315 -18 2383 48 45 0 chr1 104363865 104364154 -177829510 - AluY SINE Alu -9 302 1 1615 127 44 73 chr1 104364155 104364471 -177829193 - AluSx SINE Alu -5 307 1 324 298 146 62 chr1 104365379 104365782 -177827882 - L1M2 LINE L1 -5830 1019 552 216 0 0 0 chr1 104366632 104366656 -177827008 + (T)n Simple_repeat Simple_repeat 1 24 0 329 204 143 10 chr1 104366907 104367005 -177826659 - FLAM_A SINE Alu -1 132 22 300 295 119 36 chr1 104367120 104367313 -177826351 - L2 LINE L2 -7 3306 3098 * 3919 224 98 87 chr1 104367300 104367953 -177825711 - L2 LINE L2 -907 2407 1763 630 138 0 28 chr1 104367953 104368062 -177825602 + FRAM SINE Alu 67 172 -4 3919 224 98 87 chr1 104368062 104368814 -177824850 - L2 LINE L2 -1551 1763 877 1398 180 3 118 chr1 104368828 104369151 -177824513 + AluJb SINE Alu 1 286 -16 1720 173 87 13 chr1 104369168 104369549 -177824115 + LTR52 LTR ERVL 11 419 -2 1662 261 144 24 chr1 104369561 104370234 -177823430 - L2 LINE L2 -2449 865 112 857 213 61 59 chr1 104370842 104371015 -177822649 - Charlie2 DNA MER1_type 0 2862 2691 2434 65 0 16 chr1 104371015 104371323 -177822341 + AluSg1 SINE Alu 1 303 -6 857 213 61 59 chr1 104371323 104371524 -177822140 - Charlie2 DNA MER1_type -171 2691 2487 738 243 0 0 chr1 104371546 104371682 -177821982 - FRAM SINE Alu -39 137 2 206 118 0 0 chr1 104371748 104371782 -177821882 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 32 67 0 0 chr1 104371994 104372054 -177821610 + AT_rich Low_complexity Low_complexity 1 60 0 428 301 54 29 chr1 104372354 104372593 -177821071 + MER102a DNA MER1_type 86 330 0 696 142 0 0 chr1 104373795 104373901 -177819763 - U6 snRNA snRNA 0 107 2 517 244 203 30 chr1 104374348 104374545 -177819119 + MIR SINE MIR 11 241 -21 194 0 39 0 chr1 104374609 104374635 -177819029 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 469 118 15 0 chr1 104374735 104374803 -177818861 - AluS SINE Alu -240 69 1 1261 123 0 0 chr1 104375930 104376100 -177817564 + AluSg/x SINE Alu 131 300 -12 855 273 35 18 chr1 104376575 104376995 -177816669 + LTR33A LTR ERVL 5 523 0 258 95 0 0 chr1 104377014 104377056 -177816608 + (TA)n Simple_repeat Simple_repeat 2 43 0 1932 132 0 14 chr1 104377056 104377345 -177816319 - AluJb SINE Alu -16 296 12 197 316 76 25 chr1 104377461 104377540 -177816124 - L2 LINE L2 -2 3270 3188 1939 106 68 31 chr1 104377562 104377855 -177815809 + AluSx SINE Alu 3 306 -6 2047 145 0 0 chr1 104378196 104378486 -177815178 + AluSx SINE Alu 1 290 -22 2204 121 0 0 chr1 104379234 104379532 -177814132 - AluSx SINE Alu -14 298 1 376 338 10 5 chr1 104380213 104380414 -177813250 + L1MC4a LINE L1 7085 7286 -522 366 215 75 0 chr1 104380479 104380562 -177813102 - MER5A DNA MER1_type -95 94 4 266 316 34 15 chr1 104380564 104380770 -177812894 + L1MC4 LINE L1 7689 7898 -144 225 0 0 0 chr1 104381133 104381158 -177812506 + (TG)n Simple_repeat Simple_repeat 2 26 0 565 335 43 10 chr1 104382295 104382504 -177811160 - MIR SINE MIR -44 218 3 973 188 43 11 chr1 104382916 104383102 -177810562 + AluJo SINE Alu 120 311 -1 30 45 0 0 chr1 104383473 104383517 -177810147 + AT_rich Low_complexity Low_complexity 1 44 0 5749 87 12 2 chr1 104383609 104384440 -177809224 + L1PA11 LINE L1 5334 6172 -2 1728 213 126 46 chr1 104384469 104385294 -177808370 - L1MDa LINE L1 -4292 2248 1358 5395 137 35 27 chr1 104385313 104386249 -177807415 + Tigger7 DNA MER2_type 15 961 -1526 2140 108 0 14 chr1 104386249 104386544 -177807120 + AluSg SINE Alu 1 291 -19 5395 137 35 27 chr1 104386544 104386578 -177807086 + Tigger7 DNA MER2_type 961 993 -1494 1140 125 62 0 chr1 104386600 104386808 -177806856 + Tigger7 DNA MER2_type 2271 2491 0 21 0 0 0 chr1 104387029 104387050 -177806614 + AT_rich Low_complexity Low_complexity 1 21 0 285 346 0 0 chr1 104387473 104387554 -177806110 - MER102a DNA MER1_type -249 81 1 428 242 50 0 chr1 104387828 104387927 -177805737 - FLAM_A SINE Alu -26 116 13 2223 113 0 0 chr1 104387927 104388218 -177805446 + AluSp SINE Alu 1 291 -22 25 31 0 0 chr1 104388235 104388267 -177805397 + AT_rich Low_complexity Low_complexity 1 32 0 4398 61 9 0 chr1 104388449 104389003 -177804661 - L1PA7 LINE L1 0 6154 5596 342 209 54 62 chr1 104389096 104389225 -177804439 - L1MC5 LINE L1 -29 7932 7805 330 252 39 10 chr1 104389232 104389335 -177804329 + MER94 DNA DNA 6 111 -23 1773 140 79 34 chr1 104389784 104390140 -177803524 - THE1C LTR MaLR -3 372 1 9614 129 22 35 chr1 104390140 104391739 -177801925 - THE1C-int LTR MaLR 0 1580 3 351 115 0 0 chr1 104391770 104391822 -177801842 + MSTA LTR MaLR 341 392 -36 461 105 23 23 chr1 104391822 104391908 -177801756 - THE1-int LTR MaLR -451 1129 1044 1378 167 75 41 chr1 104391915 104392233 -177801431 - THE1C LTR MaLR -46 329 1 750 166 36 26 chr1 104392233 104392426 -177801238 - L1MC5 LINE L1 -240 7721 7527 508 110 0 0 chr1 104393154 104393227 -177800437 + AluS SINE Alu 1 73 -240 22215 50 7 2 chr1 104393591 104397287 -177796377 + L1PA5 LINE L1 2352 6065 -89 219 355 110 0 chr1 104397405 104397560 -177796104 + L2 LINE L2 2567 2738 -576 537 221 123 62 chr1 104397772 104397871 -177795793 + MIR SINE MIR 2 93 -169 1856 146 7 17 chr1 104397871 104398172 -177795492 - AluJb SINE Alu -14 298 1 537 221 123 62 chr1 104398172 104398267 -177795397 + MIR SINE MIR 93 208 -54 662 227 23 32 chr1 104398480 104398499 -177795165 - LTR54 LTR ERV1 0 510 492 1860 168 0 16 chr1 104398499 104398809 -177794855 + AluJb SINE Alu 1 305 -7 662 227 23 32 chr1 104398809 104399009 -177794655 - LTR54 LTR ERV1 -18 492 293 269 151 0 19 chr1 104399054 104399107 -177794557 - LTR54 LTR ERV1 -384 126 75 195 219 0 0 chr1 104399353 104399394 -177794270 + L2 LINE L2 3273 3313 0 798 247 0 0 chr1 104400239 104400401 -177793263 + FRAM SINE Alu 1 162 -4 1819 176 0 13 chr1 104400548 104400855 -177792809 + AluJb SINE Alu 1 303 -9 535 245 14 85 chr1 104400933 104401145 -177792519 + LTR33 LTR ERVL 1 197 -324 358 229 0 0 chr1 104401178 104401248 -177792416 - MER81 DNA DNA 0 114 45 577 248 0 8 chr1 104401522 104401655 -177792009 - MIR SINE MIR -8 254 123 215 292 326 11 chr1 104401729 104401905 -177791759 + L2 LINE L2 3032 3263 -50 893 152 0 152 chr1 104401905 104402000 -177791664 - MER5A DNA MER1_type -2 187 79 2135 151 0 0 chr1 104402000 104402312 -177791352 - AluSx SINE Alu 0 312 1 893 152 0 152 chr1 104402312 104402359 -177791305 - MER5A DNA MER1_type -110 79 85 2248 125 0 0 chr1 104402359 104402664 -177791000 - AluSx SINE Alu -7 305 1 893 152 0 152 chr1 104402664 104402737 -177790927 - MER5A DNA MER1_type -103 86 4 2337 82 3 20 chr1 104403118 104403421 -177790243 + AluY SINE Alu 1 298 -13 11625 106 10 24 chr1 104403476 104405047 -177788617 + Tigger1 DNA MER2_type 24 1566 -852 2463 81 3 0 chr1 104405047 104405354 -177788310 + AluY SINE Alu 1 308 -3 11625 106 10 24 chr1 104405354 104405623 -177788041 + Tigger1 DNA MER2_type 1566 1837 -581 1089 148 9 43 chr1 104405638 104405820 -177787844 - L1MB5 LINE L1 0 6174 5998 1963 141 154 19 chr1 104405820 104406196 -177787468 + MSTA LTR MaLR 2 428 0 1089 148 9 43 chr1 104406196 104406223 -177787441 - L1MB5 LINE L1 -176 5998 5972 3149 86 51 96 chr1 104406229 104406296 -177787368 + Tigger1 DNA MER2_type 1821 1889 -529 2275 113 0 0 chr1 104406296 104406597 -177787067 + AluSx SINE Alu 1 301 -11 3149 86 51 96 chr1 104406597 104406702 -177786962 + Tigger1 DNA MER2_type 1889 1997 -421 2259 112 0 3 chr1 104406702 104407005 -177786659 + AluSq SINE Alu 1 302 -11 1513 178 0 41 chr1 104407013 104407283 -177786381 - AluJb SINE Alu -53 259 1 3149 86 51 96 chr1 104407283 104407726 -177785938 + Tigger1 DNA MER2_type 2004 2418 0 372 183 37 0 chr1 104407743 104407825 -177785839 - MLT1I LTR MaLR 0 409 325 1893 155 0 24 chr1 104407856 104408153 -177785511 - AluJb SINE Alu -22 290 1 2649 192 95 60 chr1 104408154 104408402 -177785262 + L1ME1 LINE L1 4941 5179 -987 1562 186 0 31 chr1 104408402 104408693 -177784971 + AluJo SINE Alu 11 292 -20 2649 192 95 60 chr1 104408693 104408986 -177784678 + L1ME1 LINE L1 5179 5460 -706 2359 92 0 0 chr1 104408995 104409288 -177784376 + AluSg SINE Alu 1 293 -17 879 129 0 50 chr1 104409288 104409417 -177784247 - FLAM_C SINE Alu -177 125 2 2649 192 95 60 chr1 104409417 104409992 -177783672 + L1ME1 LINE L1 5460 6085 -81 401 224 152 73 chr1 104410093 104410183 -177783481 - MLT1I LTR MaLR -231 178 97 2199 110 7 0 chr1 104410183 104410483 -177783181 - AluSx SINE Alu -10 302 1 401 224 152 73 chr1 104410483 104410557 -177783107 - MLT1I LTR MaLR -312 97 1 225 0 0 0 chr1 104410639 104410664 -177783000 + (T)n Simple_repeat Simple_repeat 1 25 0 1039 168 64 39 chr1 104410667 104410870 -177782794 - AluJo SINE Alu -89 223 16 244 250 0 0 chr1 104411118 104411174 -177782490 + L3 LINE CR1 1443 1498 -79 26 0 0 0 chr1 104411282 104411308 -177782356 + AT_rich Low_complexity Low_complexity 1 26 0 2485 76 0 3 chr1 104411344 104411646 -177782018 - AluSp SINE Alu -12 301 1 220 314 88 22 chr1 104413754 104413891 -177779773 - MIR SINE MIR -67 195 50 946 185 40 0 chr1 104415215 104415415 -177778249 + MER3 DNA MER1_type 2 209 0 1713 157 26 45 chr1 104415817 104416129 -177777535 - AluJo SINE Alu -6 306 1 275 172 0 31 chr1 104416160 104416224 -177777440 - L1ME2 LINE L1 -10 6154 6093 * 4134 196 67 39 chr1 104416218 104416547 -177777117 - L1MB7 LINE L1 -13 6171 5853 1312 190 216 3 chr1 104416547 104416899 -177776765 - MSTA LTR MaLR 0 428 2 4134 196 67 39 chr1 104416899 104418271 -177775393 - L1MB7 LINE L1 -331 5853 4413 751 93 7 147 chr1 104418280 104418430 -177775234 + FRAM SINE Alu 24 152 -24 2149 97 43 7 chr1 104418724 104419024 -177774640 - AluY SINE Alu 0 311 1 1892 142 13 19 chr1 104419024 104419333 -177774331 - AluJo SINE Alu -5 307 1 470 275 0 8 chr1 104419333 104419453 -177774211 - MER8 DNA MER2_type -119 120 2 1307 174 63 15 chr1 104419455 104419725 -177773939 - Tigger3(Golem) DNA MER2_type -2745 284 2 2169 108 30 7 chr1 104419768 104420065 -177773599 + AluSx SINE Alu 1 304 -8 1415 164 122 24 chr1 104420404 104420733 -177772931 - MER46B DNA MER2_type 0 236 1 2294 104 0 0 chr1 104420838 104421135 -177772529 + AluSx SINE Alu 1 297 -15 1931 145 0 20 chr1 104422124 104422421 -177771243 - AluSx SINE Alu -21 291 1 650 170 5 160 chr1 104423133 104423339 -177770325 - AluJo SINE Alu -61 251 78 1043 147 115 5 chr1 104423339 104423393 -177770271 - AluSx SINE Alu -100 212 165 1755 113 117 15 chr1 104423393 104423530 -177770134 - AluSx SINE Alu -10 302 180 2428 71 0 0 chr1 104423530 104423826 -177769838 - AluY SINE Alu -15 296 1 1755 113 117 15 chr1 104423826 104423962 -177769702 - AluSx SINE Alu -132 180 1 1043 147 115 5 chr1 104423962 104424098 -177769566 - AluSx SINE Alu -147 165 1 2414 84 0 0 chr1 104424215 104424513 -177769151 - AluY SINE Alu -13 298 1 213 363 94 6 chr1 104424706 104424866 -177768798 + L2 LINE L2 1901 2074 -1240 631 211 0 9 chr1 104424932 104425046 -177768618 - FLAM_C SINE Alu -30 113 1 237 206 56 28 chr1 104425675 104425782 -177767882 - HAL1 LINE L1 -1450 1057 948 365 228 180 62 chr1 104425956 104426167 -177767497 - HAL1 LINE L1 -20 2487 2252 2283 108 0 0 chr1 104426451 104426746 -177766918 + AluY SINE Alu 1 295 -16 1158 214 147 82 chr1 104426938 104427263 -177766401 - HAL1 LINE L1 -574 1933 1631 968 163 19 6 chr1 104427263 104427423 -177766241 - FAM SINE Alu -13 162 1 1158 214 147 82 chr1 104427423 104427820 -177765844 - HAL1 LINE L1 -876 1631 1164 955 183 89 60 chr1 104428020 104428435 -177765229 - L1MC5 LINE L1 -433 7528 7102 1097 154 32 118 chr1 104428572 104428852 -177764812 - AluJo SINE Alu -22 290 35 2193 110 3 13 chr1 104428884 104429194 -177764470 - AluSq SINE Alu -6 307 1 2325 123 0 0 chr1 104429195 104429504 -177764160 - AluSg SINE Alu -1 309 1 334 277 75 85 chr1 104429508 104429696 -177763968 - HAL1 LINE L1 -2167 340 155 210 293 150 36 chr1 104429849 104429989 -177763675 + L2 LINE L2 2151 2306 -1008 728 240 91 40 chr1 104430009 104430350 -177763314 - L1M4 LINE L1 -2911 3235 2858 2054 154 3 0 chr1 104430350 104430661 -177763003 - AluJb SINE Alu 0 312 1 728 240 91 40 chr1 104430661 104430823 -177762841 - L1M4 LINE L1 -3288 2858 2706 321 351 9 0 chr1 104430900 104431014 -177762650 + L2 LINE L2 2422 2536 -778 2110 133 0 0 chr1 104431147 104431447 -177762217 - AluSx SINE Alu -10 302 3 229 260 170 40 chr1 104431516 104431616 -177762048 - L2 LINE L2 -1 3312 3200 * 413 359 77 48 chr1 104431615 104432055 -177761609 + L2 LINE L2 2814 3266 -6 380 326 6 11 chr1 104432694 104432875 -177760789 + HAL1 LINE L1 734 913 -1594 630 272 70 45 chr1 104432875 104433188 -177760476 + HAL1 LINE L1 1336 1656 -851 252 310 46 0 chr1 104433249 104433336 -177760328 + HAL1 LINE L1 1810 1900 -607 306 294 116 25 chr1 104433415 104433735 -177759929 + HAL1 LINE L1 2047 2395 -112 2231 77 0 11 chr1 104433843 104434158 -177759506 - AluY SINE Alu 0 312 1 869 168 158 42 chr1 104434918 104435108 -177758556 - AluJo SINE Alu -19 293 82 1785 177 16 10 chr1 104435114 104435424 -177758240 - AluJo SINE Alu 0 312 1 517 197 92 14 chr1 104435424 104435566 -177758098 - L1MB2 LINE L1 -41 6130 5978 1679 137 63 39 chr1 104435863 104436148 -177757516 + AluJb SINE Alu 1 292 -20 330 281 46 46 chr1 104436308 104436396 -177757268 + L1MC5 LINE L1 7751 7841 -120 2168 101 10 10 chr1 104436396 104436692 -177756972 + AluSg SINE Alu 1 296 -14 330 281 46 46 chr1 104436692 104436756 -177756908 + L1MC5 LINE L1 7840 7903 -58 25 51 0 0 chr1 104436785 104436824 -177756840 + AT_rich Low_complexity Low_complexity 1 39 0 26 88 0 0 chr1 104437027 104437095 -177756569 + AT_rich Low_complexity Low_complexity 1 68 0 1749 160 0 4 chr1 104437521 104437784 -177755880 - AluJb SINE Alu -48 264 3 2364 95 0 0 chr1 104437947 104438241 -177755423 + AluSc SINE Alu 3 296 -13 212 274 16 32 chr1 104438353 104438415 -177755249 - L2 LINE L2 -30 3242 3182 2456 31 42 0 chr1 104438420 104438709 -177754955 + AluY SINE Alu 1 301 -10 285 271 49 12 chr1 104439081 104439200 -177754464 + L2 LINE L2 3182 3268 -4 2151 99 0 7 chr1 104439229 104439521 -177754143 - AluSg SINE Alu -20 290 1 218 222 0 48 chr1 104439772 104439835 -177753829 - L2 LINE L2 -50 3222 3163 2188 107 3 7 chr1 104440067 104440365 -177753299 - AluSp SINE Alu -16 297 1 459 180 120 10 chr1 104440617 104440717 -177752947 + Charlie1 DNA MER1_type 1450 1560 -1201 2116 124 7 7 chr1 104440763 104441069 -177752595 - AluSx SINE Alu -6 306 1 538 85 12 0 chr1 104441105 104441187 -177752477 + Charlie1 DNA MER1_type 1727 1809 -952 1560 157 49 26 chr1 104441314 104441619 -177752045 - AluJo SINE Alu 0 312 1 219 69 0 0 chr1 104441812 104441841 -177751823 + (TG)n Simple_repeat Simple_repeat 2 30 0 1471 224 26 28 chr1 104441888 104442316 -177751348 - L1M4c LINE L1 -4656 1728 1302 1071 144 74 13 chr1 104442310 104442539 -177751125 - L1MB3 LINE L1 -118 6065 5823 * 2364 99 0 3 chr1 104442868 104443180 -177750484 - AluSx SINE Alu -1 311 1 1579 215 3 6 chr1 104446639 104446950 -177746714 + AluJo SINE Alu 1 310 -2 238 321 28 0 chr1 104447035 104447141 -177746523 + L1ME LINE L1 5724 5832 -289 384 285 207 0 chr1 104447216 104447409 -177746255 + MIR SINE MIR 3 235 -27 21 0 0 0 chr1 104447602 104447623 -177746041 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 104449507 104449531 -177744133 + AT_rich Low_complexity Low_complexity 1 24 0 938 174 0 45 chr1 104449640 104449818 -177743846 - AluJo SINE Alu -51 261 92 2771 149 67 36 chr1 104449859 104450044 -177743620 - Tigger1 DNA MER2_type -1795 623 445 1715 161 20 10 chr1 104450044 104450343 -177743321 - AluJo SINE Alu -10 302 1 2771 149 67 36 chr1 104450343 104450679 -177742985 - Tigger1 DNA MER2_type -1973 445 86 516 221 49 25 chr1 104450799 104450921 -177742743 + FLAM_A SINE Alu 1 125 -8 1375 197 21 17 chr1 104451287 104451576 -177742088 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr1 104451804 104451825 -177741839 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 104452106 104452135 -177741529 + AT_rich Low_complexity Low_complexity 1 29 0 228 243 15 118 chr1 104452382 104452518 -177741146 + MIR3 SINE MIR 2 123 -85 22 0 0 0 chr1 104452732 104452754 -177740910 + AT_rich Low_complexity Low_complexity 1 22 0 2065 102 6 49 chr1 104453542 104453867 -177739797 + AluSq SINE Alu 1 311 -2 2214 115 0 0 chr1 104455335 104455631 -177738033 - AluSx SINE Alu -16 296 1 23 78 0 0 chr1 104455705 104455756 -177737908 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 104455919 104455943 -177737721 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr1 104456736 104456761 -177736903 + (T)n Simple_repeat Simple_repeat 1 25 0 526 156 92 37 chr1 104456792 104456901 -177736763 - FRAM SINE Alu -17 159 45 579 165 9 9 chr1 104457380 104457489 -177736175 - L1MC1 LINE L1 -81 6252 6144 381 291 81 78 chr1 104458909 104459329 -177734335 + L3 LINE CR1 480 986 -591 288 211 0 0 chr1 104459334 104459386 -177734278 + L3 LINE CR1 1235 1286 -291 328 333 101 25 chr1 104459422 104459581 -177734083 + L3 LINE CR1 1406 1576 -1 379 309 96 0 chr1 104459760 104459896 -177733768 + MIR3 SINE MIR 47 195 -13 455 259 65 29 chr1 104460550 104460689 -177732975 - MIR3 SINE MIR -62 146 3 23 0 0 0 chr1 104461475 104461498 -177732166 + AT_rich Low_complexity Low_complexity 1 23 0 2314 88 7 0 chr1 104461805 104462102 -177731562 + AluSx SINE Alu 1 299 -13 28 29 0 0 chr1 104462769 104462804 -177730860 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr1 104463086 104463106 -177730558 + (T)n Simple_repeat Simple_repeat 1 20 0 213 65 0 0 chr1 104463257 104463288 -177730376 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1811 279 119 101 chr1 104463472 104463823 -177729841 - L2 LINE L2 -223 3090 2747 2265 92 3 0 chr1 104463823 104464116 -177729548 + AluSx SINE Alu 1 294 -18 1811 279 119 101 chr1 104464116 104464470 -177729194 - L2 LINE L2 -566 2747 2401 249 98 0 0 chr1 104464470 104464511 -177729153 + (CA)n Simple_repeat Simple_repeat 2 42 0 1811 279 119 101 chr1 104464511 104465590 -177728074 - L2 LINE L2 -912 2401 1285 294 271 101 8 chr1 104465590 104465719 -177727945 - L2 LINE L2 -1883 1431 1291 25 0 0 0 chr1 104467120 104467145 -177726519 + AT_rich Low_complexity Low_complexity 1 25 0 1551 193 10 13 chr1 104468051 104468351 -177725313 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 104468359 104468380 -177725284 + AT_rich Low_complexity Low_complexity 1 21 0 2140 123 0 7 chr1 104468489 104468799 -177724865 - AluSx SINE Alu -4 308 1 590 288 38 64 chr1 104468991 104469079 -177724585 - MIR SINE MIR -3 259 170 1475 170 83 0 chr1 104469079 104469355 -177724309 + AluJo SINE Alu 1 299 -13 590 288 38 64 chr1 104469355 104469530 -177724134 - MIR SINE MIR -92 170 3 435 266 148 24 chr1 104469545 104469714 -177723950 - MIR3 SINE MIR -1 207 18 2279 74 0 29 chr1 104472956 104473265 -177720399 + AluY SINE Alu 1 300 -11 3370 168 50 21 chr1 104474543 104475126 -177718538 + MER106B DNA MER1_type 1 610 -449 1972 164 0 10 chr1 104475126 104475436 -177718228 + AluJo SINE Alu 1 307 -5 3370 168 50 21 chr1 104475436 104475566 -177718098 + MER106B DNA MER1_type 610 735 -324 23 68 0 0 chr1 104477381 104477425 -177716239 + AT_rich Low_complexity Low_complexity 1 44 0 336 113 38 0 chr1 104477461 104477549 -177716115 - AluS SINE Alu 0 317 228 1871 139 6 63 chr1 104477718 104477909 -177715755 - AluSx SINE Alu 0 312 146 2133 109 3 3 chr1 104477909 104478203 -177715461 - AluSq SINE Alu -19 294 1 1871 139 6 63 chr1 104478203 104478342 -177715322 - AluSx SINE Alu -166 146 1 1881 112 11 11 chr1 104478627 104478914 -177714750 - AluY SINE Alu -24 287 1 2302 67 0 10 chr1 104479013 104479311 -177714353 + AluY SINE Alu 1 295 -16 1774 140 21 3 chr1 104479405 104479691 -177713973 + AluJb SINE Alu 1 291 -21 219 36 0 0 chr1 104479691 104479719 -177713945 + (TG)n Simple_repeat Simple_repeat 2 29 0 1382 249 91 16 chr1 104479987 104480417 -177713247 - MLT1C LTR MaLR 0 467 6 10932 137 80 52 chr1 104481165 104483397 -177710267 + Tigger7 DNA MER2_type 102 2397 -90 696 123 9 0 chr1 104483397 104483503 -177710161 + AluJb SINE Alu 1 107 -205 2268 183 109 32 chr1 104483570 104484140 -177709524 - L1MD2 LINE L1 -244 6115 5502 256 290 70 113 chr1 104484203 104484389 -177709275 - L3 LINE CR1 -15 1562 1385 231 354 124 0 chr1 104485020 104485133 -177708531 + MER5A DNA MER1_type 58 184 -5 28 48 0 0 chr1 104486887 104486929 -177706735 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr1 104488422 104488448 -177705216 + AT_rich Low_complexity Low_complexity 1 26 0 1396 192 46 18 chr1 104488483 104488764 -177704900 + AluJo SINE Alu 1 289 -23 229 174 196 54 chr1 104489060 104489152 -177704512 - AluSc SINE Alu -3 296 192 705 208 94 0 chr1 104489155 104489304 -177704360 - FAM SINE Alu -12 163 1 24 0 0 0 chr1 104489647 104489671 -177703993 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 104489791 104489812 -177703852 + AT_rich Low_complexity Low_complexity 1 21 0 1200 174 174 15 chr1 104490096 104490355 -177703309 + AluSg SINE Alu 1 300 0 21 71 0 0 chr1 104490583 104490625 -177703039 + AT_rich Low_complexity Low_complexity 1 42 0 1136 122 127 0 chr1 104490751 104490972 -177702692 + MER106B DNA MER1_type 325 573 -486 1324 173 97 28 chr1 104490975 104491264 -177702400 + AluJo SINE Alu 1 309 -3 2547 40 3 0 chr1 104491370 104491673 -177701991 + AluY SINE Alu 1 304 -7 892 265 111 4 chr1 104491679 104491913 -177701751 + MIR SINE MIR 3 261 -1 2112 105 24 0 chr1 104492098 104492393 -177701271 - AluSc SINE Alu -7 302 1 289 310 106 28 chr1 104492739 104492881 -177700783 + MIR SINE MIR 35 187 -75 266 222 0 19 chr1 104493874 104493928 -177699736 - MIR3 SINE MIR -18 190 138 1679 73 131 4 chr1 104494103 104494348 -177699316 + AluSg1 SINE Alu 1 276 -33 513 231 84 42 chr1 104494663 104494806 -177698858 - MIR SINE MIR -34 228 80 332 315 45 0 chr1 104494851 104494940 -177698724 - MIR SINE MIR -168 94 2 896 62 86 0 chr1 104495012 104495140 -177698524 - MER85 DNA T2_type 0 139 1 2032 128 0 22 chr1 104495842 104496161 -177697503 + AluSx SINE Alu 1 312 0 408 301 118 63 chr1 104496172 104496450 -177697214 + HAL1 LINE L1 1316 1616 -891 867 222 0 0 chr1 104496450 104496617 -177697047 + FAM SINE Alu 1 167 -8 408 301 118 63 chr1 104496617 104496670 -177696994 + HAL1 LINE L1 1616 1665 -842 2134 112 10 3 chr1 104496874 104497170 -177696494 - AluSx SINE Alu -14 298 1 1958 135 3 23 chr1 104497221 104497525 -177696139 + AluSx SINE Alu 1 298 -14 310 194 65 21 chr1 104497679 104497772 -177695892 + L1MEd LINE L1 313 409 -6007 1016 294 65 53 chr1 104497823 104498296 -177695368 + L1MEd LINE L1 510 988 -5428 1271 219 171 128 chr1 104498296 104498811 -177694853 + MLT1E LTR MaLR 3 590 -3 502 130 138 16 chr1 104498812 104498935 -177694729 + L1MEd LINE L1 1871 2008 -4418 599 141 215 0 chr1 104498942 104499077 -177694587 + L1MEd LINE L1 2057 2220 -4206 1287 92 0 0 chr1 104499089 104499274 -177694390 - L1MA2 LINE L1 0 6304 6120 8696 129 13 10 chr1 104499306 104501644 -177692020 - L1MA2 LINE L1 -165 6139 3797 3525 238 57 28 chr1 104501644 104502081 -177691583 + L1MEd LINE L1 2276 2699 -3727 2125 95 0 20 chr1 104502081 104502376 -177691288 + AluSc SINE Alu 1 289 -20 3525 238 57 28 chr1 104502376 104503293 -177690371 + L1MEd LINE L1 2699 3623 -2803 1544 181 64 0 chr1 104503294 104503411 -177690253 + AluJo SINE Alu 1 109 -203 333 0 0 0 chr1 104503411 104503448 -177690216 + (CA)n Simple_repeat Simple_repeat 2 38 0 1544 181 64 0 chr1 104503448 104503611 -177690053 + AluJo SINE Alu 109 299 -13 3568 103 175 93 chr1 104503623 104504940 -177688724 + pTR5 LTR ERV1 743 2438 0 3840 240 24 25 chr1 104504946 104506054 -177687610 + L1MEd LINE L1 3626 4731 -1695 584 165 28 0 chr1 104506057 104506166 -177687498 + FLAM_A SINE Alu 21 132 -10 2914 119 129 41 chr1 104506169 104506749 -177686915 + L1MA7 LINE L1 5530 6160 -131 283 191 64 11 chr1 104506873 104506967 -177686697 + L1MEd LINE L1 1000 1098 -5021 2153 99 3 48 chr1 104507466 104507780 -177685884 - AluSg SINE Alu -10 300 1 609 190 17 35 chr1 104507873 104507989 -177685675 + FLAM_A SINE Alu 3 116 -17 3703 89 11 17 chr1 104507992 104508533 -177685131 - L1PA14 LINE L1 -1 6160 5623 33 0 0 0 chr1 104508597 104508630 -177685034 + AT_rich Low_complexity Low_complexity 1 33 0 247 97 16 48 chr1 104508650 104508712 -177684952 + (TA)n Simple_repeat Simple_repeat 1 60 0 225 0 0 0 chr1 104508827 104508852 -177684812 + (CA)n Simple_repeat Simple_repeat 2 26 0 335 188 36 0 chr1 104508879 104508991 -177684673 + (TA)n Simple_repeat Simple_repeat 1 116 0 21 0 0 0 chr1 104509219 104509240 -177684424 + AT_rich Low_complexity Low_complexity 1 21 0 203 222 14 111 chr1 104509302 104509374 -177684290 - L2 LINE L2 -1 3312 3248 418 258 103 26 chr1 104509383 104509538 -177684126 - MIR SINE MIR -5 257 91 289 302 123 60 chr1 104509519 104509787 -177683877 + L2 LINE L2 2673 2957 -357 * 213 200 0 22 chr1 104510009 104510054 -177683610 + (CA)n Simple_repeat Simple_repeat 1 44 0 1811 164 11 3 chr1 104510054 104510341 -177683323 - AluJo SINE Alu -23 289 1 255 246 18 0 chr1 104510352 104510409 -177683255 + L2 LINE L2 3194 3251 -21 2267 96 6 25 chr1 104510807 104511121 -177682543 + AluSx SINE Alu 1 308 -4 477 189 176 137 chr1 104511205 104511438 -177682226 - MIR SINE MIR -6 256 15 333 339 18 0 chr1 104511517 104511629 -177682035 + L2 LINE L2 2599 2712 -602 226 321 142 101 chr1 104511837 104512155 -177681509 + L2 LINE L2 2926 3256 -16 248 295 167 13 chr1 104512170 104512248 -177681416 + MIR SINE MIR 32 121 -87 331 228 132 42 chr1 104512527 104512589 -177681075 + L1ME4a LINE L1 5764 5819 -302 2485 62 0 20 chr1 104512589 104512894 -177680770 + AluSx SINE Alu 2 300 -12 331 228 132 42 chr1 104512894 104512998 -177680666 + L1ME4a LINE L1 5819 5945 -176 867 126 0 15 chr1 104514544 104514679 -177678985 + FLAM_C SINE Alu 1 133 0 2353 68 0 7 chr1 104515126 104515422 -177678242 - AluSg1 SINE Alu -13 296 3 402 311 33 8 chr1 104516460 104516582 -177677082 + MIR SINE MIR 26 150 -112 47 33 0 0 chr1 104517712 104517773 -177675891 + AT_rich Low_complexity Low_complexity 1 61 0 1823 258 96 24 chr1 104518521 104519233 -177674431 + L1MC4a LINE L1 5263 6025 -1783 34 55 0 0 chr1 104519363 104519418 -177674246 + AT_rich Low_complexity Low_complexity 1 55 0 534 264 49 80 chr1 104519441 104519749 -177673915 - L1ME LINE L1 -400 5770 5474 406 257 91 27 chr1 104520418 104520605 -177673059 - L1ME4a LINE L1 -199 5922 5724 270 225 70 0 chr1 104520626 104520697 -177672967 + L1ME LINE L1 5723 5798 -323 255 268 28 0 chr1 104520777 104520848 -177672816 + MIR SINE MIR 175 247 -15 226 274 0 0 chr1 104520934 104520985 -177672679 + (TG)n Simple_repeat Simple_repeat 1 51 0 336 277 169 12 chr1 104521800 104521966 -177671698 - HAL1 LINE L1 -605 1902 1711 408 294 84 0 chr1 104522148 104522291 -177671373 - HAL1 LINE L1 -1056 1451 1297 5689 87 21 2 chr1 104522307 104523131 -177670533 - L1MA2 LINE L1 0 6304 5466 1952 141 20 14 chr1 104523134 104523431 -177670233 - AluJb SINE Alu -13 299 1 411 235 229 43 chr1 104523443 104523678 -177669986 - HAL1 LINE L1 -1365 1142 952 2370 76 3 0 chr1 104523678 104523967 -177669697 + AluSc SINE Alu 1 290 -19 411 235 229 43 chr1 104523967 104524076 -177669588 - HAL1 LINE L1 -1555 952 734 359 354 81 37 chr1 104524667 104524938 -177668726 - HAL1 LINE L1 -1954 553 271 31 96 0 0 chr1 104525100 104525194 -177668470 + AT_rich Low_complexity Low_complexity 1 94 0 1646 176 3 20 chr1 104525907 104526208 -177667456 - AluJo SINE Alu -16 296 1 663 239 136 0 chr1 104526287 104526442 -177667222 + MER5A DNA MER1_type 2 177 -12 234 201 239 0 chr1 104526454 104526588 -177667076 - L1M4 LINE L1 -1670 4476 4311 280 304 120 25 chr1 104526677 104527045 -177666619 - L1M4 LINE L1 -1938 4208 3806 22 35 0 0 chr1 104527343 104527372 -177666292 + AT_rich Low_complexity Low_complexity 1 29 0 327 330 108 28 chr1 104527913 104528089 -177665575 + MIR SINE MIR 2 191 -71 2060 131 0 0 chr1 104528338 104528641 -177665023 - AluSx SINE Alu 0 303 1 280 324 29 29 chr1 104528782 104528918 -177664746 - L2 LINE L2 -462 2852 2717 874 259 42 45 chr1 104528963 104529442 -177664222 + MLT1A1 LTR MaLR 1 365 0 739 290 72 56 chr1 104529547 104529607 -177664057 + L1M4 LINE L1 2219 2277 -3869 1822 183 0 3 chr1 104529607 104529907 -177663757 + AluJb SINE Alu 3 301 -11 739 290 72 56 chr1 104529907 104531069 -177662595 + L1M4 LINE L1 2277 3460 -2686 213 213 0 0 chr1 104531071 104531118 -177662546 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1689 215 131 49 chr1 104531204 104531305 -177662359 + L1ME3 LINE L1 5447 5538 -624 2618 58 0 0 chr1 104531305 104531615 -177662049 - AluY SINE Alu -1 310 1 1689 215 131 49 chr1 104531615 104532149 -177661515 + L1ME3 LINE L1 5538 6134 -28 1543 208 3 10 chr1 104532218 104532511 -177661153 - AluJo SINE Alu -21 291 1 353 189 82 41 chr1 104532519 104532641 -177661023 - MER74B LTR ERVL 0 622 496 4113 148 19 25 chr1 104532641 104533330 -177660334 - MER52A LTR ERV1 0 1755 1071 1763 165 34 0 chr1 104533548 104533839 -177659825 - AluJo SINE Alu -10 302 2 22 0 0 0 chr1 104533893 104533915 -177659749 + AT_rich Low_complexity Low_complexity 1 22 0 601 198 0 0 chr1 104533924 104534035 -177659629 + FLAM_C SINE Alu 1 111 -32 22 0 0 0 chr1 104534815 104534837 -177658827 + AT_rich Low_complexity Low_complexity 1 22 0 226 285 60 53 chr1 104536077 104536228 -177657436 - L2 LINE L2 -1021 2293 2142 445 336 35 7 chr1 104536255 104536398 -177657266 - L2 LINE L2 -5 3267 3121 420 341 197 23 chr1 104536558 104537249 -177656415 - L2 LINE L2 -568 2746 1936 948 202 0 0 chr1 104537249 104537417 -177656247 + FRAM SINE Alu 1 167 -9 198 339 98 18 chr1 104537420 104537644 -177656020 - L2 LINE L2 -1363 1951 1710 249 0 0 0 chr1 104538323 104538357 -177655307 - L1PA3 LINE L1 -3 6152 6119 244 316 53 0 chr1 104539543 104539619 -177654045 - MIR3 SINE MIR -41 167 88 1269 193 158 40 chr1 104539868 104540292 -177653372 - HsTC2 DNA Tc2 -2 1896 1423 499 234 37 0 chr1 104540406 104540513 -177653151 + MIR SINE MIR 65 175 -87 3428 187 77 13 chr1 104541183 104541890 -177651774 - L1MB7 LINE L1 0 6184 5423 1603 127 131 8 chr1 104541890 104542157 -177651507 - AluSg SINE Alu 0 300 1 3428 187 77 13 chr1 104542157 104542213 -177651451 - L1MB7 LINE L1 -761 5423 5372 2086 126 3 0 chr1 104542232 104542526 -177651138 - AluSc SINE Alu -14 295 1 2330 92 3 0 chr1 104542526 104542820 -177650844 - AluSp SINE Alu -18 295 1 370 331 118 0 chr1 104543073 104543200 -177650464 - MIR3 SINE MIR -31 177 36 1729 164 28 7 chr1 104543343 104543630 -177650034 + AluJo SINE Alu 1 293 -19 375 243 54 20 chr1 104544119 104544267 -177649397 - L1ME3 LINE L1 -279 5883 5731 2337 77 7 10 chr1 104544557 104544854 -177648810 + AluSg SINE Alu 1 296 -14 701 286 75 6 chr1 104545267 104545636 -177648028 - L1ME LINE L1 -298 5823 5425 21 36 0 0 chr1 104545897 104545925 -177647739 + AT_rich Low_complexity Low_complexity 1 28 0 1580 70 33 0 chr1 104545925 104546139 -177647525 - L1PA13 LINE L1 -1 6162 5942 317 208 61 144 chr1 104546273 104546303 -177647361 - L1ME2 LINE L1 -15 6319 6288 3539 124 11 9 chr1 104546303 104546829 -177646835 - MER1A DNA MER1_type 0 527 1 317 208 61 144 chr1 104546829 104546970 -177646694 - L1ME2 LINE L1 -46 6288 6000 1190 209 113 12 chr1 104547025 104547369 -177646295 - L1M4 LINE L1 -3068 3078 2700 595 200 61 0 chr1 104547688 104547803 -177645861 - FLAM_A SINE Alu -11 122 1 371 311 59 8 chr1 104548908 104549027 -177644637 - MER5A DNA MER1_type -4 185 61 1749 170 19 16 chr1 104549028 104549339 -177644325 - AluJo SINE Alu 0 312 1 197 262 0 0 chr1 104549466 104549508 -177644156 + L3b LINE CR1 1285 1326 -257 313 219 49 0 chr1 104549806 104549888 -177643776 - L1ME4a LINE L1 -67 6054 5969 2180 113 10 3 chr1 104550512 104550821 -177642843 - AluSx SINE Alu -1 311 1 219 175 25 0 chr1 104550948 104550988 -177642676 + (CA)n Simple_repeat Simple_repeat 2 42 0 406 344 28 17 chr1 104551587 104551668 -177641996 + MIR3 SINE MIR 19 98 -110 226 0 0 56 chr1 104551668 104551704 -177641960 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 406 344 28 17 chr1 104551704 104551802 -177641862 + MIR3 SINE MIR 98 200 -8 22 88 0 0 chr1 104552758 104552815 -177640849 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chr1 104552915 104552942 -177640722 + AT_rich Low_complexity Low_complexity 1 27 0 200 188 0 0 chr1 104553204 104553236 -177640428 + (CAA)n Simple_repeat Simple_repeat 2 33 0 556 268 79 43 chr1 104553280 104553534 -177640130 - MER68 LTR ERV1 -120 442 180 2052 136 0 0 chr1 104554074 104554368 -177639296 + AluSx SINE Alu 1 294 -18 334 279 43 64 chr1 104554877 104554991 -177638673 - HAL1 LINE L1 -475 2032 1924 2148 93 14 0 chr1 104554991 104555280 -177638384 - AluSp SINE Alu -20 293 1 334 279 43 64 chr1 104555280 104555398 -177638266 - HAL1 LINE L1 -583 1924 1805 2406 89 0 0 chr1 104555539 104555843 -177637821 - AluSc SINE Alu -5 304 1 1351 182 18 39 chr1 104556162 104556330 -177637334 - AluJb SINE Alu 0 314 154 423 0 0 0 chr1 104556330 104556377 -177637287 + (TG)n Simple_repeat Simple_repeat 1 47 0 1351 182 18 39 chr1 104556377 104556527 -177637137 - AluJb SINE Alu -160 154 2 901 282 93 30 chr1 104556596 104557263 -177636401 - L2 LINE L2 -1054 2260 1459 274 363 44 9 chr1 104557998 104558111 -177635553 + L2 LINE L2 3154 3270 -2 532 166 7 138 chr1 104558202 104558347 -177635317 - MER5B DNA MER1_type -1 177 52 1400 253 250 25 chr1 104558675 104559280 -177634384 + L2 LINE L2 56 796 -2518 353 288 129 43 chr1 104560137 104560276 -177633388 + MIR3 SINE MIR 30 180 -28 569 275 69 23 chr1 104561608 104561826 -177631838 - MIR SINE MIR -16 246 19 1260 277 99 61 chr1 104562014 104562389 -177631275 + L2 LINE L2 2124 2483 -831 1940 122 43 0 chr1 104562389 104562668 -177630996 - AluSq SINE Alu -22 291 1 1260 277 99 61 chr1 104562668 104562857 -177630807 + L2 LINE L2 2483 2717 -597 2158 132 0 7 chr1 104562857 104563161 -177630503 + AluSg SINE Alu 3 304 -6 1260 277 99 61 chr1 104563161 104563234 -177630430 + L2 LINE L2 2717 2786 -528 1606 181 54 23 chr1 104563237 104563591 -177630073 + L1MB5 LINE L1 5417 5781 -393 2214 119 73 14 chr1 104563591 104563935 -177629729 - THE1B LTR MaLR 0 364 1 10749 96 52 3 chr1 104563935 104565441 -177628223 - THE1B-int LTR MaLR 0 1580 1 2127 131 83 0 chr1 104565441 104565777 -177627887 - THE1B LTR MaLR 0 364 1 1820 156 51 31 chr1 104565777 104566167 -177627497 + L1MB5 LINE L1 5777 6174 0 579 298 203 35 chr1 104566224 104566593 -177627071 + L2 LINE L2 2883 3313 0 39 22 0 0 chr1 104568372 104568418 -177625246 + AT_rich Low_complexity Low_complexity 1 46 0 928 150 6 24 chr1 104568472 104568639 -177625025 - FRAM SINE Alu -9 167 4 7451 219 59 51 chr1 104568643 104568819 -177624845 - L1M3a LINE L1 -1699 4335 4162 1809 185 0 3 chr1 104568819 104569127 -177624537 - AluJb SINE Alu 0 312 6 7451 219 59 51 chr1 104569127 104569423 -177624241 - L1M3a LINE L1 -1872 4162 3870 2372 88 0 3 chr1 104569423 104569729 -177623935 - AluSg1 SINE Alu -4 305 1 7451 219 59 51 chr1 104569729 104570109 -177623555 - L1M3a LINE L1 -2164 3870 3494 1877 168 10 0 chr1 104570109 104570407 -177623257 + AluJb SINE Alu 1 301 -11 7451 219 59 51 chr1 104570407 104570971 -177622693 - L1M3a LINE L1 -2540 3494 2936 281 108 0 0 chr1 104570971 104571008 -177622656 - FLAM SINE Alu -10 123 87 7451 219 59 51 chr1 104571008 104572959 -177620705 - L1M3a LINE L1 -3098 2936 892 387 60 0 0 chr1 104572960 104573010 -177620654 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 1172 182 47 47 chr1 104573037 104573295 -177620369 - AluJb SINE Alu -44 268 11 1750 286 28 6 chr1 104573304 104573849 -177619815 - L1 LINE L1 -5131 2434 1878 608 358 57 33 chr1 104574316 104574917 -177618747 - L1M3a LINE L1 -5255 700 86 180 0 0 0 chr1 104574942 104574962 -177618702 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 424 103 13 26 chr1 104575125 104575203 -177618461 - L1PB3 LINE L1 -1 6153 6077 265 204 0 0 chr1 104575206 104575260 -177618404 - L1M3a LINE L1 -5882 73 20 200 357 71 0 chr1 104575772 104575856 -177617808 + L2 LINE L2 3171 3260 -12 2415 88 0 0 chr1 104575910 104576218 -177617446 - AluSg SINE Alu -2 308 1 1660 186 0 17 chr1 104576416 104576774 -177616890 + AluJb SINE Alu 1 353 0 605 78 56 0 chr1 104577613 104577703 -177615961 + L1MB4 LINE L1 6080 6174 -6 2168 121 0 19 chr1 104577922 104578236 -177615428 + AluSg SINE Alu 1 308 -2 352 103 9 9 chr1 104629078 104629142 -177564522 - Alu SINE Alu -255 45 1 2064 125 3 0 chr1 104629197 104629492 -177564172 - AluSc SINE Alu -13 296 1 2298 92 3 0 chr1 104629492 104629786 -177563878 - AluSp SINE Alu -18 295 1 363 339 118 0 chr1 104630039 104630166 -177563498 - MIR3 SINE MIR -31 177 36 1730 160 28 7 chr1 104630309 104630596 -177563068 + AluJo SINE Alu 1 293 -19 387 243 54 20 chr1 104631085 104631233 -177562431 - L1ME3 LINE L1 -279 5883 5731 2262 81 7 10 chr1 104631523 104631818 -177561846 + AluSg SINE Alu 1 294 -16 730 290 94 22 chr1 104632137 104632579 -177561085 - L1ME2 LINE L1 -278 5886 5425 21 36 0 0 chr1 104632840 104632868 -177560796 + AT_rich Low_complexity Low_complexity 1 28 0 1575 70 33 0 chr1 104632868 104633082 -177560582 - L1PA13 LINE L1 -1 6162 5942 321 208 61 144 chr1 104633216 104633246 -177560418 - L1ME2 LINE L1 -15 6319 6288 3522 120 11 9 chr1 104633246 104633772 -177559892 - MER1A DNA MER1_type 0 527 1 321 208 61 144 chr1 104633772 104633913 -177559751 - L1ME2 LINE L1 -46 6288 6000 1215 209 113 12 chr1 104633968 104634312 -177559352 - L1M4 LINE L1 -3068 3078 2700 585 200 61 0 chr1 104634631 104634746 -177558918 - FLAM_A SINE Alu -11 122 1 369 311 59 8 chr1 104635851 104635970 -177557694 - MER5A DNA MER1_type -4 185 61 1729 170 19 16 chr1 104635971 104636282 -177557382 - AluJo SINE Alu 0 312 1 195 262 0 0 chr1 104636409 104636451 -177557213 + L3b LINE CR1 1285 1326 -257 321 219 49 0 chr1 104636749 104636831 -177556833 - L1ME4a LINE L1 -67 6054 5969 2432 56 7 7 chr1 104637455 104637760 -177555904 - AluY SINE Alu -6 305 1 1269 177 44 20 chr1 104637980 104638228 -177555436 - AluJb SINE Alu -21 291 38 210 232 18 36 chr1 104638483 104638539 -177555125 - MIR SINE MIR -114 94 40 1299 119 52 0 chr1 104638777 104638987 -177554677 - Tigger7 DNA MER2_type 0 2587 2367 5731 142 35 26 chr1 104639009 104639043 -177554621 - Tigger7 DNA MER2_type -1494 993 961 2078 112 0 14 chr1 104639043 104639338 -177554326 - AluSg SINE Alu -19 291 1 5731 142 35 26 chr1 104639338 104640288 -177553376 - Tigger7 DNA MER2_type -1526 961 1 1985 214 126 46 chr1 104640293 104641118 -177552546 + L1MDa LINE L1 1358 2248 -4292 6045 86 14 1 chr1 104641147 104641975 -177551689 - L1PA11 LINE L1 -2 6172 5334 30 45 0 0 chr1 104642068 104642112 -177551552 + AT_rich Low_complexity Low_complexity 1 44 0 933 188 43 11 chr1 104642483 104642669 -177550995 - AluJo SINE Alu -1 311 120 580 335 43 10 chr1 104643081 104643290 -177550374 + MIR SINE MIR 3 218 -44 369 0 0 0 chr1 104644427 104644468 -177549196 + (CA)n Simple_repeat Simple_repeat 2 42 0 25 83 0 0 chr1 104644572 104644632 -177549032 + AT_rich Low_complexity Low_complexity 1 60 0 333 316 34 15 chr1 104644782 104644988 -177548676 - L1MC4 LINE L1 -144 7898 7689 352 215 75 0 chr1 104644990 104645073 -177548591 + MER5A DNA MER1_type 4 94 -95 447 338 10 5 chr1 104645138 104645339 -177548325 - L1MC4a LINE L1 -522 7286 7085 2152 121 0 0 chr1 104646021 104646319 -177547345 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr1 104647051 104647071 -177546593 + (TA)n Simple_repeat Simple_repeat 2 21 0 1998 142 0 0 chr1 104647071 104647360 -177546304 - AluSx SINE Alu -23 289 1 1890 103 69 31 chr1 104647701 104647992 -177545672 - AluSx SINE Alu -8 304 3 202 316 76 25 chr1 104648014 104648093 -177545571 + L2 LINE L2 3188 3270 -2 1888 132 0 14 chr1 104648209 104648498 -177545166 + AluJb SINE Alu 12 296 -16 204 111 0 0 chr1 104648498 104648534 -177545130 + (TA)n Simple_repeat Simple_repeat 2 37 0 950 275 45 21 chr1 104648553 104648990 -177544674 - LTR33A LTR ERVL 0 523 2 1232 123 0 0 chr1 104649449 104649619 -177544045 - AluSg/x SINE Alu -12 300 131 2100 83 48 17 chr1 104650746 104651036 -177542628 + AluY SINE Alu 1 299 -12 22 88 0 0 chr1 104651899 104651956 -177541708 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chr1 104652056 104652083 -177541581 + AT_rich Low_complexity Low_complexity 1 27 0 200 188 0 0 chr1 104652345 104652377 -177541287 + (CAA)n Simple_repeat Simple_repeat 2 33 0 556 268 79 43 chr1 104652421 104652675 -177540989 - MER68 LTR ERV1 -120 442 180 2037 139 0 0 chr1 104653215 104653509 -177540155 + AluSx SINE Alu 1 294 -18 334 279 43 64 chr1 104654018 104654132 -177539532 - HAL1 LINE L1 -475 2032 1924 2194 96 7 0 chr1 104654132 104654423 -177539241 - AluSp SINE Alu -20 293 1 334 279 43 64 chr1 104654423 104654541 -177539123 - HAL1 LINE L1 -583 1924 1805 2406 89 0 0 chr1 104654682 104654986 -177538678 - AluSc SINE Alu -5 304 1 1398 184 16 36 chr1 104655305 104655463 -177538201 - AluJb SINE Alu -8 304 153 333 0 0 0 chr1 104655463 104655500 -177538164 + (TG)n Simple_repeat Simple_repeat 1 37 0 1398 184 16 36 chr1 104655500 104655650 -177538014 - AluJb SINE Alu -159 153 2 901 282 93 30 chr1 104655719 104656386 -177537278 - L2 LINE L2 -1054 2260 1459 274 363 44 9 chr1 104657121 104657234 -177536430 + L2 LINE L2 3154 3270 -2 532 166 7 138 chr1 104657325 104657470 -177536194 - MER5B DNA MER1_type -1 177 52 1400 253 250 25 chr1 104657798 104658403 -177535261 + L2 LINE L2 56 796 -2518 365 281 129 43 chr1 104659249 104659388 -177534276 + MIR3 SINE MIR 30 180 -28 569 275 69 23 chr1 104660721 104660939 -177532725 - MIR SINE MIR -16 246 19 1260 277 99 61 chr1 104661127 104661502 -177532162 + L2 LINE L2 2124 2483 -831 1930 122 43 0 chr1 104661502 104661781 -177531883 - AluSq SINE Alu -22 291 1 1260 277 99 61 chr1 104661781 104661970 -177531694 + L2 LINE L2 2483 2717 -597 2150 132 0 7 chr1 104661970 104662273 -177531391 + AluSg SINE Alu 3 303 -7 1260 277 99 61 chr1 104662273 104662346 -177531318 + L2 LINE L2 2717 2786 -528 1606 181 54 23 chr1 104662349 104662703 -177530961 + L1MB5 LINE L1 5417 5781 -393 2268 121 74 0 chr1 104662703 104663042 -177530622 - THE1B LTR MaLR 0 364 1 10795 95 52 3 chr1 104663042 104664548 -177529116 - THE1B-int LTR MaLR 0 1580 1 2127 131 83 0 chr1 104664548 104664884 -177528780 - THE1B LTR MaLR 0 364 1 1849 154 51 31 chr1 104664884 104665274 -177528390 + L1MB5 LINE L1 5777 6174 0 610 301 194 35 chr1 104665331 104665703 -177527961 + L2 LINE L2 2883 3313 0 32 43 0 0 chr1 104667482 104667528 -177526136 + AT_rich Low_complexity Low_complexity 1 46 0 928 150 6 24 chr1 104667582 104667749 -177525915 - FRAM SINE Alu -9 167 4 6861 152 15 29 chr1 104667753 104667929 -177525735 - L1 LINE L1 -1699 4335 4158 1809 185 0 3 chr1 104667929 104668237 -177525427 - AluJb SINE Alu 0 312 6 6861 152 15 29 chr1 104668237 104668533 -177525131 - L1 LINE L1 -1876 4158 3860 2381 88 0 3 chr1 104668533 104668840 -177524824 - AluSg1 SINE Alu -3 306 1 6861 152 15 29 chr1 104668840 104669220 -177524444 - L1 LINE L1 -2174 3860 3476 1917 163 10 0 chr1 104669220 104669521 -177524143 + AluJb SINE Alu 1 304 -8 6861 152 15 29 chr1 104669521 104670032 -177523632 - L1 LINE L1 -2558 3476 2988 281 108 0 0 chr1 104670086 104670123 -177523541 - FLAM SINE Alu -10 123 87 346 226 0 0 chr1 104670174 104670258 -177523406 + L1 LINE L1 2709 2792 -3354 3531 221 64 26 chr1 104670317 104670709 -177522955 - L1 LINE L1 -3071 2963 2588 1530 114 9 9 chr1 104670709 104670929 -177522735 + AluJo SINE Alu 87 306 -6 3531 221 64 26 chr1 104670929 104672521 -177521143 - L1 LINE L1 -3446 2588 892 351 65 0 0 chr1 104672522 104672568 -177521096 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1176 186 43 43 chr1 104672595 104672853 -177520811 - AluJb SINE Alu -44 268 11 1750 286 28 6 chr1 104672862 104673407 -177520257 - L1 LINE L1 -5131 903 347 705 354 5 29 chr1 104674099 104674475 -177519189 - L1 LINE L1 -5503 452 86 180 0 0 0 chr1 104674500 104674520 -177519144 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 424 103 13 26 chr1 104674683 104674761 -177518903 - L1PB3 LINE L1 -1 6153 6077 265 204 0 0 chr1 104674764 104674818 -177518846 - L1 LINE L1 -5882 73 20 200 357 71 0 chr1 104675330 104675414 -177518250 + L2 LINE L2 3171 3260 -12 2423 87 0 0 chr1 104675468 104675777 -177517887 - AluSg SINE Alu -1 309 1 1660 186 0 17 chr1 104675975 104676324 -177517340 + AluJb SINE Alu 1 344 0 605 78 56 0 chr1 104677163 104677253 -177516411 + L1MB4 LINE L1 6080 6174 -6 2168 121 0 19 chr1 104677472 104677786 -177515878 + AluSg SINE Alu 1 308 -2 197 28 83 69 chr1 104678582 104678654 -177515010 + (TTAA)n Simple_repeat Simple_repeat 4 76 0 23 0 0 0 chr1 104679164 104679187 -177514477 + AT_rich Low_complexity Low_complexity 1 23 0 726 230 124 6 chr1 104679562 104679740 -177513924 + MIR SINE MIR 3 201 -61 310 346 0 0 chr1 104680174 104680255 -177513409 - Charlie8 DNA MER1_type -2336 81 1 424 242 50 0 chr1 104680529 104680628 -177513036 - FLAM_A SINE Alu -26 116 13 2213 113 0 0 chr1 104680628 104680919 -177512745 + AluSp SINE Alu 1 291 -22 25 31 0 0 chr1 104680936 104680968 -177512696 + AT_rich Low_complexity Low_complexity 1 32 0 4420 60 9 0 chr1 104681150 104681704 -177511960 - L1PA7 LINE L1 0 6154 5596 342 209 54 62 chr1 104681797 104681926 -177511738 - L1MC5 LINE L1 -29 7932 7805 360 252 39 10 chr1 104681933 104682036 -177511628 + MER94 DNA DNA 6 111 -23 1762 140 76 31 chr1 104682376 104682732 -177510932 - THE1C LTR MaLR -3 372 1 9577 129 22 35 chr1 104682732 104684331 -177509333 - THE1C-int LTR MaLR 0 1580 3 369 115 0 0 chr1 104684362 104684414 -177509250 + MSTA LTR MaLR 341 392 -36 492 105 23 23 chr1 104684414 104684500 -177509164 - THE1-int LTR MaLR -451 1129 1044 1462 166 72 41 chr1 104684507 104684826 -177508838 - THE1C LTR MaLR -46 329 1 800 191 41 32 chr1 104684826 104685072 -177508592 - L1MC5 LINE L1 -240 7721 7474 496 110 0 0 chr1 104685747 104685820 -177507844 + AluS SINE Alu 1 73 -239 23081 54 5 0 chr1 104686184 104689949 -177503715 + L1PA5 LINE L1 2352 6138 -16 290 114 0 0 chr1 104690817 104690861 -177502803 - L2 LINE L2 -1 3312 3269 225 246 8 59 chr1 104691533 104691651 -177502013 + GA-rich Low_complexity Low_complexity 1 112 0 723 182 16 0 chr1 104692080 104692201 -177501463 + FLAM_A SINE Alu 1 123 -10 557 260 94 11 chr1 104692680 104692861 -177500803 + L2 LINE L2 3117 3312 -1 2065 266 108 28 chr1 104692978 104693592 -177500072 - L2 LINE L2 -1220 2094 1404 2586 46 0 0 chr1 104693592 104693894 -177499770 - AluY SINE Alu -9 302 1 2065 266 108 28 chr1 104693894 104694056 -177499608 - L2 LINE L2 -1910 1404 1256 498 277 22 71 chr1 104694056 104694240 -177499424 - MER20B DNA MER1_type -608 175 1 382 181 121 0 chr1 104694363 104694446 -177499218 - MIR SINE MIR -21 241 149 224 200 73 18 chr1 104694472 104694527 -177499137 - MIR SINE MIR -86 176 119 2232 102 0 0 chr1 104694649 104694944 -177498720 + AluSg1 SINE Alu 1 295 -14 1425 145 21 21 chr1 104695089 104695330 -177498334 + AluJo SINE Alu 1 241 -71 2046 133 10 3 chr1 104695642 104695935 -177497729 - AluSx SINE Alu -17 295 1 23 0 0 0 chr1 104696075 104696098 -177497566 + AT_rich Low_complexity Low_complexity 1 23 0 8195 55 1 0 chr1 104697311 104698276 -177495388 - LTR5 LTR ERVK -3 966 1 2154 94 0 7 chr1 104698499 104698815 -177494849 - AluSq SINE Alu 0 314 1 22 35 0 0 chr1 104699108 104699137 -177494527 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr1 104699154 104699194 -177494470 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr1 104699276 104699297 -177494367 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 104699762 104699792 -177493872 + AT_rich Low_complexity Low_complexity 1 30 0 185 286 0 36 chr1 104699822 104699878 -177493786 - MIR SINE MIR 0 262 209 1628 88 7 130 chr1 104699881 104699927 -177493737 - THE1B LTR MaLR 0 364 314 2366 68 20 3 chr1 104699927 104700221 -177493443 + AluY SINE Alu 1 299 -12 1628 88 7 130 chr1 104700221 104700266 -177493398 - THE1B LTR MaLR -50 314 265 2061 118 3 7 chr1 104700266 104700562 -177493102 - AluSq SINE Alu -18 295 1 1628 88 7 130 chr1 104700562 104700776 -177492888 - THE1B LTR MaLR -99 265 96 721 233 141 36 chr1 104700933 104701404 -177492260 + L1MDa LINE L1 1290 1756 -4784 2224 142 91 5 chr1 104701432 104701826 -177491838 - MSTA LTR MaLR 0 428 1 1574 106 16 20 chr1 104701826 104702080 -177491584 - MSTA-int LTR MaLR 0 1580 1328 712 101 24 3 chr1 104702080 104702198 -177491466 - MSTA LTR MaLR -248 127 1 960 234 59 19 chr1 104702207 104702578 -177491086 + L1MDa LINE L1 2664 3049 -3491 1454 171 4 38 chr1 104702586 104702849 -177490815 + AluJb SINE Alu 1 254 -58 804 144 7 50 chr1 104702849 104702988 -177490676 + AluSg/x SINE Alu 142 274 -38 199 149 66 0 chr1 104702989 104703110 -177490554 + (TA)n Simple_repeat Simple_repeat 1 129 0 1708 200 0 3 chr1 104703124 104703424 -177490240 + AluJo SINE Alu 1 299 -13 420 252 112 0 chr1 104703465 104703608 -177490056 + L1MEc LINE L1 85 243 -6153 2565 224 69 32 chr1 104703613 104704121 -177489543 + L1MEc LINE L1 286 774 -5622 1106 165 0 0 chr1 104704121 104704285 -177489379 + FAM SINE Alu 2 165 -10 2565 224 69 32 chr1 104704285 104704738 -177488926 + L1MEc LINE L1 774 1282 -5114 1908 223 41 69 chr1 104704807 104704895 -177488769 + L1MEc LINE L1 1888 1977 -4238 2216 101 14 0 chr1 104704895 104705192 -177488472 - AluSc SINE Alu -8 301 1 1908 223 41 69 chr1 104705192 104705675 -177487989 + L1MEc LINE L1 1977 2472 -3743 2176 146 0 3 chr1 104705675 104705984 -177487680 + AluSx SINE Alu 1 308 -4 1908 223 41 69 chr1 104705984 104705995 -177487669 + L1MEc LINE L1 2472 2482 -3733 186 43 0 0 chr1 104705995 104706018 -177487646 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1908 223 41 69 chr1 104706018 104706563 -177487101 + L1MEc LINE L1 2482 2949 -3266 1496 218 3 3 chr1 104706565 104706849 -177486815 + AluJo SINE Alu 4 287 -25 2355 135 15 8 chr1 104706855 104707256 -177486408 + HSMAR2 DNA Mariner 875 1278 -24 422 240 45 7 chr1 104707277 104707431 -177486233 + L1MEc LINE L1 3092 3251 -2964 * 1962 178 66 35 chr1 104707427 104707849 -177485815 + L1MA3 LINE L1 12 446 -7119 2683 73 30 11 chr1 104707849 104708217 -177485447 + THE1C LTR MaLR 1 375 0 6329 98 50 53 chr1 104708217 104709258 -177484406 + THE1C-int LTR MaLR 1 1038 -542 2852 190 43 22 chr1 104709258 104709995 -177483669 - HUERS-P3 LTR ERV1 -8083 836 1 2292 174 43 77 chr1 104709995 104710629 -177483035 - LTR9 LTR ERV1 0 612 1 13508 167 42 17 chr1 104710634 104710935 -177482729 + L1MA3 LINE L1 3441 3733 -3991 2118 140 3 0 chr1 104710935 104711243 -177482421 + AluSx SINE Alu 1 309 -3 13508 167 42 17 chr1 104711243 104712416 -177481248 + L1MA3 LINE L1 3733 4875 -2849 2043 123 0 14 chr1 104712416 104712708 -177480956 - AluSx SINE Alu -24 288 1 13508 167 42 17 chr1 104712708 104712843 -177480821 + L1MA3 LINE L1 4875 5005 -2719 204 40 0 0 chr1 104712843 104712868 -177480796 + (CAA)n Simple_repeat Simple_repeat 2 26 0 13508 167 42 17 chr1 104712868 104715404 -177478260 + L1MA3 LINE L1 5005 7663 -61 830 176 0 0 chr1 104715404 104715535 -177478129 + FLAM_C SINE Alu 1 131 -2 13508 167 42 17 chr1 104715535 104715599 -177478065 + L1MA3 LINE L1 7663 7724 0 683 276 62 9 chr1 104715608 104715945 -177477719 + L1MEc LINE L1 3238 3592 -2623 21 36 0 0 chr1 104716023 104716051 -177477613 + AT_rich Low_complexity Low_complexity 1 28 0 2313 102 0 0 chr1 104716507 104716811 -177476853 + AluSx SINE Alu 1 304 -8 245 286 75 25 chr1 104716877 104717038 -177476626 + MER109 Unknown Unknown 69 237 -2195 4362 137 20 1 chr1 104717179 104717865 -177475799 - L1M1 LINE L1 -6851 714 16 363 23 0 0 chr1 104717890 104717934 -177475730 + (CA)n Simple_repeat Simple_repeat 2 45 0 1080 205 11 23 chr1 104717934 104718197 -177475467 + L1MEc LINE L1 4027 4286 -1929 1448 198 145 73 chr1 104718198 104718739 -177474925 + L1MEc LINE L1 4659 5258 -957 2472 73 0 0 chr1 104718739 104719040 -177474624 - AluY SINE Alu -10 301 1 1448 198 145 73 chr1 104719040 104719165 -177474499 + L1MEc LINE L1 5258 5373 -842 282 106 0 0 chr1 104719173 104719220 -177474444 + (TG)n Simple_repeat Simple_repeat 2 48 0 2192 82 0 11 chr1 104719220 104719502 -177474162 - AluSx SINE Alu -18 294 16 353 257 112 28 chr1 104719610 104719824 -177473840 + L1ME LINE L1 4996 5227 -919 236 232 73 8 chr1 104719883 104720006 -177473658 + L1ME LINE L1 5551 5686 -476 607 222 231 23 chr1 104720014 104720240 -177473424 - MLT1E2 LTR MaLR -199 427 249 1782 135 82 0 chr1 104720240 104720507 -177473157 - AluJb SINE Alu -23 289 1 607 222 231 23 chr1 104720507 104720630 -177473034 - MLT1E2 LTR MaLR -377 249 19 207 0 0 0 chr1 104720633 104720656 -177473008 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1692 152 51 4 chr1 104720662 104720938 -177472726 - AluJo SINE Alu -23 289 1 2335 92 3 0 chr1 104721141 104721435 -177472229 + AluSp SINE Alu 1 295 -18 217 298 0 0 chr1 104721607 104721654 -177472010 - MER5A DNA MER1_type -77 112 66 670 229 138 22 chr1 104722297 104722528 -177471136 + MER34C LTR ERV1 41 298 -287 260 174 41 82 chr1 104722677 104722775 -177470889 + MER34 LTR ERV1 449 542 0 410 304 311 7 chr1 104722837 104723409 -177470255 + L2 LINE L2 1948 2693 -621 446 208 0 19 chr1 104723580 104723686 -177469978 + LTR56 LTR ERV1 9 112 -333 2139 151 3 0 chr1 104723718 104724029 -177469635 - AluSx SINE Alu 0 312 1 637 215 42 88 chr1 104724091 104724195 -177469469 + LTR56 LTR ERV1 172 279 -166 1704 137 74 11 chr1 104724195 104724479 -177469185 - AluJo SINE Alu -10 302 1 637 215 42 88 chr1 104724479 104724634 -177469030 + LTR56 LTR ERV1 279 419 -26 638 130 10 0 chr1 104724634 104724734 -177468930 - FLAM_A SINE Alu -11 131 31 1817 154 39 0 chr1 104726425 104726704 -177466960 + AluJo SINE Alu 9 298 -14 228 370 44 37 chr1 104726707 104726842 -177466822 - L2 LINE L2 -12 3260 3125 339 183 49 12 chr1 104727042 104727124 -177466540 - L2 LINE L2 -2 3270 3186 2001 270 229 28 chr1 104727127 104728773 -177464891 + L2 LINE L2 1294 3312 -1 1747 191 27 0 chr1 104728984 104729283 -177464381 - AluJb SINE Alu -5 307 1 1283 194 116 24 chr1 104729622 104729993 -177463671 - L1ME1 LINE L1 -5 6161 5757 2131 133 7 0 chr1 104730044 104730353 -177463311 + AluSx SINE Alu 1 311 -1 21 71 0 0 chr1 104730671 104730713 -177462951 + AT_rich Low_complexity Low_complexity 1 42 0 4864 146 14 26 chr1 104730887 104731264 -177462400 + L1 LINE L1 4019 4399 -1747 2270 108 7 0 chr1 104731264 104731560 -177462104 + AluSq SINE Alu 2 299 -14 4864 146 14 26 chr1 104731560 104732121 -177461543 + L1 LINE L1 4399 4946 -1200 13761 160 23 59 chr1 104732122 104732866 -177460798 + L1M1 LINE L1 3173 3942 -3623 2560 52 3 10 chr1 104732866 104733176 -177460488 + AluY SINE Alu 1 308 -3 13761 160 23 59 chr1 104733176 104733463 -177460201 + L1M1 LINE L1 3942 4238 -3327 2112 153 0 3 chr1 104733463 104733776 -177459888 - AluSx SINE Alu 0 312 1 13761 160 23 59 chr1 104733776 104734211 -177459453 + L1M1 LINE L1 4238 4687 -2878 2089 114 17 3 chr1 104734211 104734508 -177459156 + AluSg SINE Alu 1 301 -9 13761 160 23 59 chr1 104734508 104734883 -177458781 + L1M1 LINE L1 4687 5074 -2491 642 133 0 0 chr1 104734883 104734981 -177458683 - AluY SINE Alu 0 311 214 13761 160 23 59 chr1 104734981 104735292 -177458372 + L1M1 LINE L1 5074 5395 -2170 1906 173 0 0 chr1 104735292 104735576 -177458088 - AluJo SINE Alu -28 284 1 13761 160 23 59 chr1 104735576 104735678 -177457986 + L1M1 LINE L1 5395 5499 -2066 2120 137 0 0 chr1 104735678 104735977 -177457687 + AluSx SINE Alu 1 299 -13 13761 160 23 59 chr1 104735977 104736821 -177456843 + L1M1 LINE L1 5499 6234 -1331 2340 106 0 3 chr1 104736821 104737132 -177456532 + AluSx SINE Alu 1 310 -2 13761 160 23 59 chr1 104737132 104737546 -177456118 + L1M1 LINE L1 6234 6661 -904 22 56 0 0 chr1 104737546 104737582 -177456082 + AT_rich Low_complexity Low_complexity 1 36 0 426 268 65 34 chr1 104737764 104737995 -177455669 + MLT1H LTR MaLR 22 299 -250 336 318 94 24 chr1 104738213 104738383 -177455281 + MER5A DNA MER1_type 4 185 -4 1817 239 69 43 chr1 104739054 104739593 -177454071 - MLT1H1 LTR MaLR -2 553 1 193 228 70 18 chr1 104739659 104739716 -177453948 + L2 LINE L2 2108 2167 -1147 278 0 0 0 chr1 104739739 104739774 -177453890 - MER30 DNA MER1_type -66 164 130 495 0 0 0 chr1 104739776 104739831 -177453833 + (TG)n Simple_repeat Simple_repeat 2 56 0 874 65 173 0 chr1 104739862 104739901 -177453763 - MER30 DNA MER1_type -66 164 133 315 0 0 0 chr1 104739901 104739936 -177453728 + (TG)n Simple_repeat Simple_repeat 2 36 0 874 65 173 0 chr1 104739936 104740035 -177453629 - MER30 DNA MER1_type -97 133 2 2353 269 47 53 chr1 104740035 104740897 -177452767 + L2 LINE L2 2164 3004 -309 3414 132 13 23 chr1 104740897 104741429 -177452235 - MER1A DNA MER1_type 0 527 1 2353 269 47 53 chr1 104741429 104741729 -177451935 + L2 LINE L2 3004 3304 -9 2305 95 0 0 chr1 104741776 104742070 -177451594 + AluSx SINE Alu 1 294 -18 417 75 149 0 chr1 104742953 104743020 -177450644 - MADE1 DNA Mariner 0 80 4 545 286 125 0 chr1 104744842 104745034 -177448630 + L2 LINE L2 2570 2785 -529 216 160 0 40 chr1 104745037 104745087 -177448577 + (TAA)n Simple_repeat Simple_repeat 3 50 0 479 340 42 0 chr1 104745157 104745301 -177448363 + L2 LINE L2 3122 3271 -1 209 354 0 51 chr1 104745288 104745367 -177448297 - L3b LINE CR1 -1 1582 1508 * 446 207 7 76 chr1 104745765 104745910 -177447754 - MER112 DNA MER1_type -125 135 1 2158 128 34 0 chr1 104746049 104746346 -177447318 - AluSx SINE Alu -5 307 1 822 221 221 26 chr1 104746597 104746622 -177447042 - L2 LINE L2 -1874 1440 1421 2460 80 3 0 chr1 104746622 104746933 -177446731 - AluSp SINE Alu -1 312 1 822 221 221 26 chr1 104746933 104747179 -177446485 - L2 LINE L2 -1893 1421 1116 21 0 0 0 chr1 104747246 104747267 -177446397 + AT_rich Low_complexity Low_complexity 1 21 0 1896 88 0 19 chr1 104747272 104747534 -177446130 + AluSc SINE Alu 44 300 -9 201 292 0 0 chr1 104747534 104747582 -177446082 - L2 LINE L2 -68 3204 3157 477 139 20 40 chr1 104747649 104747750 -177445914 - MER53 DNA DNA 0 189 91 303 289 0 24 chr1 104747761 104747844 -177445820 - L2 LINE L2 -185 3087 3007 180 0 0 0 chr1 104747943 104747963 -177445701 + (TC)n Simple_repeat Simple_repeat 1 20 0 2252 139 3 3 chr1 104748040 104748406 -177445258 - MER47A DNA MER2_type 0 366 1 647 193 28 55 chr1 104749140 104749285 -177444379 - MER70A LTR ERVL -328 144 4 253 322 137 20 chr1 104749911 104750099 -177443565 + MIR SINE MIR 3 206 -56 274 215 13 13 chr1 104750198 104750277 -177443387 - L1ME LINE L1 -373 5748 5670 2086 107 7 10 chr1 104750278 104750576 -177443088 - AluSx SINE Alu -15 297 1 1214 158 0 5 chr1 104750576 104750760 -177442904 - AluJo SINE Alu -129 183 1 352 234 70 38 chr1 104751771 104751929 -177441735 - L1MEc LINE L1 -6199 197 35 367 257 103 22 chr1 104752456 104752592 -177441072 + L2 LINE L2 3151 3297 -16 180 77 0 0 chr1 104752594 104752620 -177441044 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr1 104753459 104753480 -177440184 + AT_rich Low_complexity Low_complexity 1 21 0 * 464 271 81 76 chr1 104753474 104753715 -177439949 - L1ME4a LINE L1 -4 6117 5872 2415 87 0 0 chr1 104753715 104754015 -177439649 + AluSc SINE Alu 2 301 -8 464 271 81 76 chr1 104754015 104754182 -177439482 - L1ME4a LINE L1 -249 5872 5707 240 163 0 0 chr1 104754220 104754263 -177439401 + GA-rich Low_complexity Low_complexity 4 46 0 315 324 46 18 chr1 104754303 104754522 -177439142 - L1ME LINE L1 -617 5504 5280 1656 160 6 86 chr1 104754573 104754910 -177438754 - AluJo SINE Alu -2 310 1 30 0 0 0 chr1 104754952 104754982 -177438682 + AT_rich Low_complexity Low_complexity 1 30 0 1009 168 26 0 chr1 104755240 104755395 -177438269 - FAM SINE Alu -16 159 1 25 0 0 0 chr1 104755793 104755818 -177437846 + AT_rich Low_complexity Low_complexity 1 25 0 2443 83 3 0 chr1 104755858 104756160 -177437504 + AluSg SINE Alu 1 303 -7 759 66 139 0 chr1 104756615 104756737 -177436927 + MER85 DNA T2_type 1 139 0 2316 62 45 0 chr1 104757463 104757753 -177435911 - AluY SINE Alu -8 303 1 235 307 13 13 chr1 104757762 104757837 -177435827 - MIR SINE MIR -114 148 74 411 262 156 8 chr1 104757926 104758048 -177435616 + MIR SINE MIR 2 141 -121 1442 167 0 28 chr1 104758373 104758624 -177435040 - AluJo SINE Alu -20 292 49 205 182 0 0 chr1 104758656 104758689 -177434975 + T-rich Low_complexity Low_complexity 3 35 0 344 314 113 64 chr1 104759517 104759845 -177433819 + L2 LINE L2 2928 3271 -1 248 263 237 7 chr1 104759974 104760126 -177433538 + MLT1H LTR MaLR 347 533 -16 30 27 0 0 chr1 104760346 104760383 -177433281 + AT_rich Low_complexity Low_complexity 1 37 0 300 230 40 70 chr1 104760699 104760799 -177432865 + L2 LINE L2 3212 3308 -5 302 191 223 21 chr1 104761899 104761993 -177431671 - L2 LINE L2 -10 3303 3191 216 332 117 50 chr1 104762198 104762481 -177431183 + L2 LINE L2 2505 2806 -508 409 269 84 8 chr1 104762483 104762602 -177431062 + MIR SINE MIR 29 156 -106 413 340 85 30 chr1 104762720 104762920 -177430744 + MIR SINE MIR 31 241 -21 239 366 76 47 chr1 104763066 104763342 -177430322 + L2 LINE L2 2972 3255 -17 973 178 19 0 chr1 104763505 104763662 -177430002 - AluJb SINE Alu -12 300 141 233 280 227 9 chr1 104763999 104764152 -177429512 - MIR3 SINE MIR -70 192 7 2110 135 0 3 chr1 104764436 104764732 -177428932 - AluSx SINE Alu -17 295 1 958 156 6 28 chr1 104765109 104765288 -177428376 - AluJ SINE Alu 0 312 138 335 41 20 0 chr1 104765356 104765405 -177428259 + (TA)n Simple_repeat Simple_repeat 2 51 0 792 130 8 23 chr1 104765405 104765536 -177428128 - AluJ SINE Alu -172 130 2 203 235 0 20 chr1 104766611 104766662 -177427002 + (CGG)n Simple_repeat Simple_repeat 1 50 0 212 119 0 24 chr1 104766689 104766731 -177426933 + (CGG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr1 104768492 104768521 -177425143 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 104769781 104769803 -177423861 + AT_rich Low_complexity Low_complexity 1 22 0 643 220 165 17 chr1 104770247 104770483 -177423181 - MER5C DNA MER1_type -45 279 9 21 71 0 0 chr1 104770629 104770671 -177422993 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 104771334 104771356 -177422308 + AT_rich Low_complexity Low_complexity 1 22 0 699 245 21 36 chr1 104771386 104771578 -177422086 - MER91B DNA MER1_type -1 189 1 1965 144 20 0 chr1 104771956 104772262 -177421402 - AluSx SINE Alu 0 312 1 25 31 0 0 chr1 104772336 104772368 -177421296 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 104772446 104772469 -177421195 + AT_rich Low_complexity Low_complexity 1 23 0 215 254 99 0 chr1 104772497 104772568 -177421096 - MIR SINE MIR -18 244 167 1767 152 3 20 chr1 104772600 104772896 -177420768 - AluY SINE Alu -20 291 1 21 0 0 0 chr1 104773329 104773350 -177420314 + AT_rich Low_complexity Low_complexity 1 21 0 1904 191 0 0 chr1 104773418 104773721 -177419943 - AluJo SINE Alu -9 303 1 352 252 28 0 chr1 104775412 104775519 -177418145 - MIR SINE MIR 0 262 153 21 82 0 0 chr1 104775725 104775774 -177417890 + AT_rich Low_complexity Low_complexity 1 49 0 473 273 31 16 chr1 104775810 104775938 -177417726 - L2 LINE L2 -2 3311 3182 250 316 0 53 chr1 104775971 104776066 -177417598 - MIR SINE MIR -170 92 3 1028 179 6 0 chr1 104776759 104776932 -177416732 - FAM SINE Alu -1 174 1 2360 94 0 0 chr1 104777250 104777548 -177416116 - AluSx SINE Alu -14 298 1 831 242 0 0 chr1 104777887 104778071 -177415593 + FAM SINE Alu 1 49 0 901 145 0 0 chr1 104778518 104778642 -177415022 + FLAM_C SINE Alu 1 124 -19 1719 240 184 3 chr1 104778721 104779393 -177414271 + LTR50 LTR ERVL 1 794 -1 294 29 0 0 chr1 104783346 104783381 -177410283 + (T)n Simple_repeat Simple_repeat 1 35 0 1628 245 37 32 chr1 104783622 104783849 -177409815 - L1ME3A LINE L1 -72 6098 5874 1849 189 111 24 chr1 104783849 104784308 -177409356 - MLT1D LTR MaLR -4 501 3 1628 245 37 32 chr1 104784308 104784618 -177409046 - L1ME3A LINE L1 -296 5874 5558 23 33 0 0 chr1 104784895 104784925 -177408739 + AT_rich Low_complexity Low_complexity 1 30 0 2583 54 0 13 chr1 104785369 104785683 -177407981 - AluY SINE Alu -1 310 1 500 173 0 0 chr1 104785708 104785783 -177407881 - FAM SINE Alu -54 131 57 1013 162 0 100 chr1 104785852 104786093 -177407571 - MER20 DNA MER1_type 0 219 3 2442 152 89 4 chr1 104786437 104786910 -177406754 - L1MB3 LINE L1 -2 6181 5669 1316 123 37 12 chr1 104787002 104787245 -177406419 - MER6 DNA MER2_type 0 865 617 1909 146 10 3 chr1 104787248 104787536 -177406128 + AluJb SINE Alu 1 290 -22 637 128 0 0 chr1 104787606 104787700 -177405964 + AluJb SINE Alu 213 306 -6 3284 156 55 2 chr1 104787700 104788258 -177405406 - MER6 DNA MER2_type -252 613 21 2174 110 7 3 chr1 104788258 104788559 -177405105 + AluSc SINE Alu 1 302 -7 3284 156 55 2 chr1 104788559 104788582 -177405082 - MER6 DNA MER2_type -844 21 1 393 129 40 5 chr1 104789534 104789673 -177403991 - MER2 DNA MER2_type -142 203 1 320 290 53 23 chr1 104790608 104790739 -177402925 + L2 LINE L2 2601 2735 -579 391 349 54 64 chr1 104790875 104791170 -177402494 + L2 LINE L2 2933 3224 -48 909 213 19 0 chr1 104791360 104791520 -177402144 + FRAM SINE Alu 2 164 -12 2319 92 3 3 chr1 104791705 104792000 -177401664 + AluSq SINE Alu 1 295 -18 1491 152 141 0 chr1 104792160 104792423 -177401241 - AluJo SINE Alu 0 302 3 666 267 165 56 chr1 104792437 104792456 -177401208 - MLT1H1 LTR MaLR -18 537 521 2182 133 3 0 chr1 104792456 104792764 -177400900 + AluJo SINE Alu 1 309 -3 666 267 165 56 chr1 104792764 104793174 -177400490 - MLT1H1 LTR MaLR -34 521 61 2766 32 0 0 chr1 104793877 104794188 -177399476 + AluY SINE Alu 1 311 0 13267 155 102 41 chr1 104794587 104797624 -177396040 + L1M1 LINE L1 17 2928 -4637 1805 112 4 0 chr1 104797625 104797867 -177395797 + AluSx SINE Alu 1 243 -69 2730 97 114 2 chr1 104797867 104798392 -177395272 + L1M1 LINE L1 3041 3624 -3941 212 59 29 0 chr1 104798392 104798426 -177395238 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1859 174 0 0 chr1 104798428 104798715 -177394949 + AluJb SINE Alu 1 287 -25 2661 195 19 7 chr1 104798848 104799463 -177394201 + L1M1 LINE L1 3669 4291 -3274 2598 177 28 0 chr1 104799462 104799998 -177393666 + L1M1 LINE L1 4762 5312 -2253 * 6318 101 21 5 chr1 104799986 104800987 -177392677 + L1MA3 LINE L1 5280 6296 -9 658 220 43 21 chr1 104801242 104801428 -177392236 + L1M1 LINE L1 5380 5569 -1996 238 337 89 20 chr1 104801810 104801911 -177391753 - L2 LINE L2 -49 3223 3116 452 342 89 62 chr1 104802390 104803038 -177390626 + L2 LINE L2 2604 3268 -4 354 251 131 12 chr1 104803120 104803416 -177390248 + MLT1L LTR MaLR 14 380 -235 1173 207 0 5 chr1 104803456 104803669 -177389995 + AluJo SINE Alu 91 302 -10 1326 169 9 0 chr1 104803698 104803911 -177389753 + AluJo SINE Alu 84 298 -14 1917 102 52 3 chr1 104803915 104804220 -177389444 - LTR24C LTR ERV1 -41 594 275 463 190 0 0 chr1 104804227 104804306 -177389358 + L1ME1 LINE L1 5695 5773 -2012 395 223 48 102 chr1 104804336 104804502 -177389162 + L1ME1 LINE L1 6010 6166 0 399 193 57 23 chr1 104806074 104806157 -177387507 - MLT1I LTR MaLR -6 403 318 1616 178 51 70 chr1 104806157 104806237 -177387427 + MLT1A1 LTR MaLR 1 81 -284 799 48 57 0 chr1 104806237 104806342 -177387322 + HY1 scRNA scRNA 1 111 -1 1616 178 51 70 chr1 104806342 104806631 -177387033 + MLT1A1 LTR MaLR 81 363 -2 3767 121 2 6 chr1 104806706 104807219 -177386445 - MER9 LTR ERVK 0 511 1 1372 183 102 0 chr1 104807274 104807548 -177386116 - MER21B LTR ERV1 -1 862 561 2190 119 10 0 chr1 104807795 104808098 -177385566 - AluSx SINE Alu -6 306 1 1005 163 51 51 chr1 104808147 104808441 -177385223 + Charlie2 DNA MER1_type 2337 2630 -232 17909 50 2 1 chr1 104808524 104811423 -177382241 - L1PA5 LINE L1 0 6154 3270 8407 42 2 87 chr1 104811423 104812671 -177380993 + L1PA5 LINE L1 2127 3268 -2878 640 236 99 57 chr1 104812777 104812989 -177380675 - MLT1J2 LTR MaLR -221 229 9 268 106 15 167 chr1 104813142 104813208 -177380456 - LTR49-int LTR ERV1 -373 5958 5903 2412 134 28 19 chr1 104813235 104813659 -177380005 - LTR49-int LTR ERV1 -541 5790 5363 835 194 0 0 chr1 104813668 104813802 -177379862 + AluJo SINE Alu 1 134 -178 27 29 0 0 chr1 104813802 104813836 -177379828 + AT_rich Low_complexity Low_complexity 1 34 0 3249 174 53 18 chr1 104813857 104814511 -177379153 - LTR49-int LTR ERV1 -1014 5317 4641 773 137 0 0 chr1 104814584 104814686 -177378978 - FLAM_C SINE Alu -25 118 17 3232 174 41 59 chr1 104814695 104814783 -177378881 - LTR49-int LTR ERV1 -1693 4638 4550 1577 122 0 9 chr1 104814783 104815012 -177378652 + AluSx SINE Alu 41 267 -45 3232 174 41 59 chr1 104815012 104815731 -177377933 - LTR49-int LTR ERV1 -1781 4550 3846 944 211 0 29 chr1 104815731 104815902 -177377762 - FRAM SINE Alu 0 166 1 1647 158 75 29 chr1 104815912 104816191 -177377473 - AluJo SINE Alu -10 292 1 1527 152 24 57 chr1 104816191 104816527 -177377137 - LTR49-int LTR ERV1 -3209 3122 2798 209 0 97 0 chr1 104816527 104816558 -177377106 + T-rich Low_complexity Low_complexity 2 35 0 383 102 34 0 chr1 104816559 104816618 -177377046 - LTR49-int LTR ERV1 -3530 2801 2741 288 146 0 0 chr1 104816650 104816698 -177376966 + MER54A LTR ERVL 854 901 0 1142 207 22 18 chr1 104816698 104816925 -177376739 - LTR49-int LTR ERV1 -3662 2669 2442 2939 178 30 90 chr1 104817042 104817176 -177376488 - LTR49-int LTR ERV1 -3959 2372 2232 2187 62 0 7 chr1 104817176 104817451 -177376213 + AluY SINE Alu 33 305 -6 2939 178 30 90 chr1 104817451 104818054 -177375610 - LTR49-int LTR ERV1 -4099 2232 1114 1671 183 14 7 chr1 104818075 104818359 -177375305 - AluJb SINE Alu -26 286 1 1828 116 55 74 chr1 104818359 104818738 -177374926 - LTR49-int LTR ERV1 -4589 1742 1371 510 140 0 21 chr1 104818882 104818975 -177374689 - LTR49-int LTR ERV1 -4949 1382 1292 782 164 29 88 chr1 104818975 104819146 -177374518 - LTR8A LTR ERV1 0 727 567 924 227 57 0 chr1 104819146 104819340 -177374324 - LTR49-int LTR ERV1 -4281 2050 1846 1834 183 64 88 chr1 104819344 104819857 -177373807 - LTR8A LTR ERV1 -144 583 83 3396 157 48 81 chr1 104819859 104820366 -177373298 - LTR49-int LTR ERV1 -5129 1202 680 2039 130 109 62 chr1 104820366 104820798 -177372866 - LTR47A LTR ERVL 0 452 1 3396 157 48 81 chr1 104820798 104820951 -177372713 - LTR49-int LTR ERV1 -5651 680 566 1602 152 33 26 chr1 104820951 104821253 -177372411 + AluJo SINE Alu 1 304 -8 3396 157 48 81 chr1 104821253 104821336 -177372328 - LTR49-int LTR ERV1 -5765 566 482 1212 109 89 45 chr1 104821338 104821693 -177371971 + MER4B LTR ERV1 2 457 -153 2214 142 19 24 chr1 104821694 104822068 -177371596 + THE1C LTR MaLR 4 375 0 2976 107 0 0 chr1 104822068 104822471 -177371193 + THE1C-int LTR MaLR 1 403 -1177 44528 46 2 0 chr1 104822484 104828625 -177365039 - L1PA4 LINE L1 0 6155 7 6071 148 22 13 chr1 104828705 104829687 -177363977 + THE1C-int LTR MaLR 427 1417 -163 607 184 9 35 chr1 104829687 104829734 -177363930 - AluJb SINE Alu -131 181 134 180 0 0 0 chr1 104829734 104829754 -177363910 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 607 184 9 35 chr1 104829754 104829820 -177363844 - AluJb SINE Alu -178 134 71 570 152 20 10 chr1 104829820 104829919 -177363745 - LTR49-int LTR ERV1 -950 5381 5282 571 171 0 0 chr1 104829919 104830001 -177363663 - AluS SINE Alu -229 84 3 3913 211 37 65 chr1 104830002 104830300 -177363364 - LTR49-int LTR ERV1 -2633 2490 2185 1514 201 20 10 chr1 104830300 104830604 -177363060 - AluJo SINE Alu -5 307 1 3913 211 37 65 chr1 104830604 104831608 -177362056 - LTR49-int LTR ERV1 -2938 2185 1225 867 218 132 16 chr1 104831608 104831851 -177361813 - MER34C LTR ERV1 -155 430 160 1656 202 61 81 chr1 104831851 104832233 -177361431 - LTR49-int LTR ERV1 -3688 2643 2255 2468 161 160 33 chr1 104832233 104832602 -177361062 - LTR18B LTR ERVL 0 614 152 2232 122 0 0 chr1 104832602 104832890 -177360774 - AluSc SINE Alu -21 288 1 2468 161 160 33 chr1 104832890 104833065 -177360599 - LTR18B LTR ERVL -462 152 1 1656 202 61 81 chr1 104833065 104833318 -177360346 - LTR49-int LTR ERV1 -4076 2255 754 944 153 0 25 chr1 104833436 104833593 -177360071 - AluJb SINE Alu -5 307 155 4954 122 27 31 chr1 104833593 104834375 -177359289 - MER4E LTR ERV1 0 779 1 925 144 0 0 chr1 104834400 104834532 -177359132 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chr1 104835671 104835700 -177357964 + AT_rich Low_complexity Low_complexity 1 29 0 273 231 0 46 chr1 104835764 104835829 -177357835 - MIR SINE MIR -108 154 93 234 290 0 0 chr1 104835814 104835876 -177357788 - MIR SINE MIR 0 262 201 * 523 262 134 0 chr1 104836121 104836285 -177357379 + MIR SINE MIR 12 197 -65 270 262 71 50 chr1 104836318 104836459 -177357205 + L1ME LINE L1 40 183 -5887 210 234 0 31 chr1 104836475 104836539 -177357125 + T-rich Low_complexity Low_complexity 4 65 0 1609 166 31 28 chr1 104836902 104837222 -177356442 + THE1C LTR MaLR 55 375 0 5937 137 19 32 chr1 104837225 104838644 -177355020 + L1PB2 LINE L1 4730 6150 -1 2415 45 28 0 chr1 104838886 104839174 -177354490 + AluY SINE Alu 1 296 -15 1387 250 35 10 chr1 104839616 104840012 -177353652 - L1MB7 LINE L1 0 6184 5779 487 186 41 10 chr1 104840021 104840118 -177353546 - MLT1J2 LTR MaLR -306 144 45 2170 135 0 6 chr1 104840183 104840495 -177353169 + AluSx SINE Alu 2 311 -1 2085 112 0 63 chr1 104840503 104840834 -177352830 + AluSg SINE Alu 1 310 0 374 119 0 0 chr1 104840936 104840995 -177352669 - MLT1D LTR MaLR 0 626 568 315 210 66 0 chr1 104841040 104841207 -177352457 + (TA)n Simple_repeat Simple_repeat 1 178 0 2212 174 33 57 chr1 104841208 104841667 -177351997 - MLT1D LTR MaLR -57 448 1 2360 229 99 94 chr1 104841670 104842006 -177351658 + L1ME1 LINE L1 128 461 -5935 951 118 0 22 chr1 104842006 104842142 -177351522 - FLAM_C SINE Alu 0 133 1 2360 229 99 94 chr1 104842142 104842153 -177351511 + L1ME1 LINE L1 461 470 -5926 1932 94 7 14 chr1 104842153 104842430 -177351234 - AluY SINE Alu -2 309 35 2360 229 99 94 chr1 104842430 104843063 -177350601 + L1ME1 LINE L1 470 1304 -5092 2217 91 0 10 chr1 104843063 104843361 -177350303 - AluY SINE Alu -16 295 1 2360 229 99 94 chr1 104843361 104843730 -177349934 + L1ME1 LINE L1 1304 1670 -4726 713 227 7 13 chr1 104843753 104843903 -177349761 + MLT1A1 LTR MaLR 171 319 -46 198 0 0 0 chr1 104843915 104843937 -177349727 + (GA)n Simple_repeat Simple_repeat 1 22 0 1865 169 0 7 chr1 104843976 104844277 -177349387 + AluSx SINE Alu 1 299 -13 2403 53 36 3 chr1 104844279 104844580 -177349084 + AluY SINE Alu 1 311 0 919 158 31 198 chr1 104844598 104844758 -177348906 + L1ME1 LINE L1 1703 1888 -4508 685 242 0 8 chr1 104844758 104844890 -177348774 + FLAM_A SINE Alu 1 131 -2 1455 149 65 11 chr1 104844897 104845159 -177348505 + L1MB8 LINE L1 5885 6160 -18 1765 176 0 30 chr1 104845165 104845467 -177348197 - AluJb SINE Alu -17 295 3 919 158 31 198 chr1 104845467 104845539 -177348125 + L1ME1 LINE L1 1900 1855 -4541 1563 191 3 17 chr1 104845539 104845832 -177347832 + AluJo SINE Alu 1 289 -23 919 158 31 198 chr1 104845832 104846002 -177347662 + L1ME1 LINE L1 1854 2051 -4345 3771 183 42 15 chr1 104846005 104846743 -177346921 + L1MB8 LINE L1 5409 6166 -12 333 103 0 86 chr1 104846752 104846774 -177346890 + AluJo SINE Alu 84 106 -196 5838 217 56 81 chr1 104846774 104848574 -177345090 + MER52A LTR ERV1 1 1755 0 333 103 0 86 chr1 104848574 104848609 -177345055 + AluJo SINE Alu 106 136 -166 886 248 0 0 chr1 104848609 104848766 -177344898 + AluJo SINE Alu 137 293 -9 7992 236 56 48 chr1 104848783 104849256 -177344408 + L1ME1 LINE L1 2034 2502 -3713 1570 189 47 10 chr1 104849256 104849552 -177344112 + AluJb SINE Alu 3 309 -3 7992 236 56 48 chr1 104849552 104850947 -177342717 + L1ME1 LINE L1 2502 3885 -2330 441 0 0 0 chr1 104850947 104850996 -177342668 + (CA)n Simple_repeat Simple_repeat 2 50 0 7992 236 56 48 chr1 104850996 104851210 -177342454 + L1ME1 LINE L1 3885 4096 -2119 1689 163 7 31 chr1 104851210 104851499 -177342165 - AluJb SINE Alu -21 291 10 7992 236 56 48 chr1 104851499 104851784 -177341880 + L1ME1 LINE L1 4096 4377 -1838 1892 155 7 0 chr1 104851784 104852068 -177341596 - AluSx SINE Alu -24 288 3 7992 236 56 48 chr1 104852068 104852872 -177340792 + L1ME1 LINE L1 4377 5194 -1021 1459 296 74 28 chr1 104852876 104853447 -177340217 - MLT1E LTR MaLR 0 593 1 1529 199 44 51 chr1 104853489 104853613 -177340051 + L1ME1 LINE L1 5268 5391 -842 910 190 11 35 chr1 104853613 104853787 -177339877 + FAM SINE Alu 1 170 -5 1529 199 44 51 chr1 104853787 104854070 -177339594 + L1ME1 LINE L1 5391 5682 -551 5015 177 21 11 chr1 104854071 104855245 -177338419 - MER52A LTR ERV1 0 1755 903 233 211 0 0 chr1 104855248 104855286 -177338378 - MER52A LTR ERV1 -743 1012 975 3881 176 189 34 chr1 104855287 104856243 -177337421 - MER52A LTR ERV1 -650 1105 1 2315 174 40 32 chr1 104856273 104856768 -177336896 - MLT1D LTR MaLR 0 505 7 342 176 0 137 chr1 104856775 104856828 -177336836 + L1ME1 LINE L1 5703 5737 -691 1812 186 3 0 chr1 104856828 104857124 -177336540 - AluJb SINE Alu -15 297 1 342 176 0 137 chr1 104857124 104857172 -177336492 + L1ME1 LINE L1 5737 5790 -638 1286 247 94 18 chr1 104857240 104857678 -177335986 + L1ME1 LINE L1 5760 6230 -5 1854 167 0 7 chr1 104858041 104858340 -177335324 - AluJb SINE Alu -15 297 1 2672 251 96 20 chr1 104858909 104859967 -177333697 - L1ME3A LINE L1 -14 6156 5019 1755 181 3 13 chr1 104860351 104860661 -177333003 - AluJo SINE Alu -5 307 1 205 250 0 19 chr1 104861230 104861282 -177332382 - MER5B DNA MER1_type -78 100 50 544 86 343 7 chr1 104861756 104861896 -177331768 - MER53 DNA DNA -2 187 1 933 179 19 118 chr1 104862142 104862405 -177331259 + AluJo SINE Alu 64 300 -12 3418 83 7 0 chr1 104862712 104863146 -177330518 - LTR3b LTR ERVK 0 437 1 482 230 88 0 chr1 104863403 104863516 -177330148 + MER63 DNA MER1_type 1 749 -313 266 250 125 0 chr1 104863519 104863583 -177330081 + MER63 DNA MER1_type 980 1051 -11 250 229 0 0 chr1 104864083 104864131 -177329533 + CT-rich Low_complexity Low_complexity 2 49 0 28 29 0 0 chr1 104865097 104865132 -177328532 + AT_rich Low_complexity Low_complexity 1 35 0 654 224 0 0 chr1 104865132 104865248 -177328416 - FLAM_C SINE Alu -26 117 2 21 0 0 0 chr1 104865709 104865730 -177327934 + AT_rich Low_complexity Low_complexity 1 21 0 1673 148 39 43 chr1 104865785 104865907 -177327757 + AluJb SINE Alu 1 122 -190 245 27 54 0 chr1 104865907 104865944 -177327720 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1673 148 39 43 chr1 104865944 104866126 -177327538 + AluJb SINE Alu 122 304 -8 1785 155 13 13 chr1 104866324 104866633 -177327031 + AluJb SINE Alu 3 311 -1 2297 101 0 0 chr1 104866763 104867059 -177326605 + AluSq SINE Alu 1 296 -17 29 0 0 0 chr1 104868012 104868041 -177325623 + AT_rich Low_complexity Low_complexity 1 29 0 200 206 32 32 chr1 104868541 104868604 -177325060 + (CCCCG)n Simple_repeat Simple_repeat 4 66 0 279 226 36 12 chr1 104869593 104869677 -177323987 + CT-rich Low_complexity Low_complexity 4 89 0 338 249 98 52 chr1 104870077 104870250 -177323414 - L3 LINE CR1 -12 1565 1385 34 0 0 0 chr1 104870405 104870439 -177323225 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 104872170 104872191 -177321473 + AT_rich Low_complexity Low_complexity 1 21 0 2125 106 3 0 chr1 104872191 104872475 -177321189 - AluSg SINE Alu -25 285 1 232 233 137 0 chr1 104872494 104872567 -177321097 + L3 LINE CR1 444 526 -1051 317 254 109 0 chr1 104873013 104873123 -177320541 + L3 LINE CR1 952 1073 -504 436 204 32 0 chr1 104873132 104873225 -177320439 - FLAM_A SINE Alu -21 121 26 215 306 0 0 chr1 104874336 104874398 -177319266 - L2 LINE L2 -5 3308 3247 219 192 151 14 chr1 104874637 104874710 -177318954 + L2 LINE L2 3222 3304 -9 300 70 0 0 chr1 104874840 104874883 -177318781 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 73 0 0 chr1 104875083 104875138 -177318526 + AT_rich Low_complexity Low_complexity 1 55 0 834 148 117 141 chr1 104875191 104875428 -177318236 - MER2 DNA MER2_type -2 343 102 2258 93 0 0 chr1 104875428 104875753 -177317911 - AluY SINE Alu 0 311 1 1669 159 16 0 chr1 104875763 104876014 -177317650 - AluJo SINE Alu -57 255 1 834 148 117 141 chr1 104876014 104876056 -177317608 - MER2 DNA MER2_type -252 93 60 654 221 16 0 chr1 104876513 104876635 -177317029 + FLAM_A SINE Alu 2 125 -8 1617 148 23 53 chr1 104877013 104877316 -177316348 + AluJb SINE Alu 1 294 -18 380 340 43 38 chr1 104878235 104878605 -177315059 + L2 LINE L2 1807 2178 -1136 998 173 49 0 chr1 104878630 104878792 -177314872 - AluJb SINE Alu -7 305 136 582 315 29 48 chr1 104878881 104879300 -177314364 + L2 LINE L2 2377 2787 -527 2367 90 7 0 chr1 104880292 104880602 -177313062 + AluSp SINE Alu 1 312 -1 590 239 14 14 chr1 104880775 104880913 -177312751 + MER91A DNA MER1_type 39 176 -20 442 268 79 18 chr1 104881658 104881822 -177311842 - MIR SINE MIR -54 208 35 273 235 107 54 chr1 104882328 104882477 -177311187 - MIR SINE MIR 0 262 106 297 219 114 41 chr1 104882542 104882665 -177310999 - MIR3 SINE MIR -38 170 39 1592 165 95 0 chr1 104882788 104883061 -177310603 - AluJb SINE Alu -13 299 1 605 228 57 44 chr1 104883579 104883807 -177309857 + MIR SINE MIR 17 247 -15 180 77 0 0 chr1 104885144 104885170 -177308494 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 1697 160 38 7 chr1 104885891 104886184 -177307480 + AluJo SINE Alu 1 302 -10 392 211 18 78 chr1 104886286 104886452 -177307212 - L2 LINE L2 0 3313 3158 839 142 137 33 chr1 104886510 104886693 -177306971 - MER3 DNA MER1_type -5 204 3 363 282 45 65 chr1 104886718 104886963 -177306701 - L2 LINE L2 -243 3070 2831 560 214 104 19 chr1 104887013 104887167 -177306497 - MIR SINE MIR -93 169 3 272 353 22 0 chr1 104887206 104887342 -177306322 - L2 LINE L2 -524 2790 2652 417 205 0 77 chr1 104888258 104888375 -177305289 + MIR SINE MIR 88 195 -67 1125 191 25 8 chr1 104889106 104889341 -177304323 + MIR SINE MIR 14 252 -10 330 267 125 75 chr1 104889348 104889492 -177304172 + L1ME4a LINE L1 5742 5904 -217 2265 101 0 3 chr1 104889492 104889788 -177303876 + AluSg SINE Alu 1 295 -15 330 267 125 75 chr1 104889788 104889883 -177303781 + L1ME4a LINE L1 5904 5993 -128 186 40 0 0 chr1 104890012 104890025 -177303639 + (TAA)n Simple_repeat Simple_repeat 2 14 -12 2365 89 10 0 chr1 104890025 104890318 -177303346 + AluSx SINE Alu 1 296 -16 186 40 0 0 chr1 104890318 104890329 -177303335 + (TAA)n Simple_repeat Simple_repeat 13 26 0 22 56 0 0 chr1 104892490 104892526 -177301138 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr1 104892712 104892742 -177300922 + (CA)n Simple_repeat Simple_repeat 2 31 0 282 280 53 0 chr1 104892777 104892852 -177300812 - L2 LINE L2 -58 3214 3136 1517 167 14 51 chr1 104893303 104893597 -177300067 + AluJo SINE Alu 1 283 -29 1826 154 17 7 chr1 104893980 104894279 -177299385 - AluJb SINE Alu -10 302 1 441 222 36 0 chr1 104894282 104894410 -177299254 - L1ME3 LINE L1 -181 5981 5843 244 294 15 0 chr1 104894479 104894547 -177299117 - L1MEd LINE L1 -5499 620 552 203 59 0 29 chr1 104894843 104894877 -177298787 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2339 80 3 0 chr1 104894897 104895185 -177298479 - AluY SINE Alu -22 289 1 306 144 68 98 chr1 104895199 104895331 -177298333 - HAL1 LINE L1 -1398 1109 982 275 0 0 0 chr1 104895359 104895390 -177298274 + L1MA8 LINE L1 4920 4950 -1196 859 156 7 7 chr1 104895390 104895525 -177298139 - AluJo SINE Alu -177 135 1 2779 156 30 6 chr1 104895525 104895803 -177297861 + L1MA8 LINE L1 4941 5211 -1080 1168 143 131 78 chr1 104895803 104896088 -177297576 + MER44D DNA MER2_type 1 269 -2222 1758 144 53 14 chr1 104896088 104896372 -177297292 + AluSx SINE Alu 1 295 -17 1168 143 131 78 chr1 104896372 104896407 -177297257 + MER44D DNA MER2_type 269 608 -1 2779 156 30 6 chr1 104896407 104896908 -177296756 + L1MA8 LINE L1 5211 5736 -555 1453 222 10 70 chr1 104896908 104896980 -177296684 + MLT1A1 LTR MaLR 1 76 -289 1350 140 35 18 chr1 104896980 104897037 -177296627 - MER46A DNA MER2_type -2499 232 177 333 0 0 0 chr1 104897037 104897074 -177296590 + (TG)n Simple_repeat Simple_repeat 2 38 0 1350 140 35 18 chr1 104897074 104897244 -177296420 - MER46A DNA MER2_type -2554 177 1 1453 222 10 70 chr1 104897244 104897559 -177296105 + MLT1A1 LTR MaLR 76 365 0 1858 172 42 39 chr1 104897559 104897657 -177296007 + L1MA8 LINE L1 5732 5828 -343 269 128 0 0 chr1 104897657 104897696 -177295968 + MER4E LTR ERV1 654 692 -74 1858 172 42 39 chr1 104897696 104898050 -177295614 + L1MA8 LINE L1 5828 6169 -2 459 198 0 18 chr1 104898073 104898184 -177295480 - HAL1 LINE L1 -1553 954 846 311 179 115 0 chr1 104898746 104898824 -177294840 - MLT1L LTR MaLR -508 107 21 6395 144 123 113 chr1 104899376 104899924 -177293740 - L1MC3 LINE L1 0 7785 7244 280 283 28 9 chr1 104899924 104900030 -177293634 - MLT1F1 LTR MaLR -436 131 24 6395 144 123 113 chr1 104900030 104900497 -177293167 - L1MC3 LINE L1 -541 7244 6783 275 185 92 15 chr1 104900497 104900562 -177293102 - Tigger5 DNA MER2_type -1 2322 2253 6395 144 123 113 chr1 104900562 104901142 -177292522 - L1MC3 LINE L1 -1002 6783 6003 1273 175 57 0 chr1 104901129 104901358 -177292306 + L1MB3 LINE L1 5445 5686 -497 * 862 291 129 35 chr1 104901490 104902177 -177291487 - L1MEd LINE L1 -4945 1174 423 7240 55 7 3 chr1 104902300 104903962 -177289702 - L1PA6 LINE L1 -1 6153 4489 2119 124 3 0 chr1 104903969 104904252 -177289412 - AluSx SINE Alu -28 284 1 2672 156 19 50 chr1 104904253 104904724 -177288940 + L1MB3 LINE L1 5662 6146 -37 1030 188 0 0 chr1 104904724 104904889 -177288775 + FAM SINE Alu 1 165 -10 586 207 9 0 chr1 104904893 104905004 -177288660 + FLAM_A SINE Alu 5 116 -17 2672 156 19 50 chr1 104905004 104905064 -177288600 + L1MB3 LINE L1 6149 6181 -2 305 247 112 22 chr1 104905056 104905145 -177288519 - L1MC1 LINE L1 -281 6052 5956 2990 169 38 42 chr1 104905148 104905523 -177288141 - L1MB8 LINE L1 -126 6052 5680 2004 162 0 0 chr1 104905523 104905826 -177287838 - AluJb SINE Alu -9 303 1 2990 169 38 42 chr1 104905826 104906165 -177287499 - L1MB8 LINE L1 -498 5680 5341 3977 59 0 6 chr1 104906181 104906687 -177286977 - L1PA6 LINE L1 -1 6153 5651 1400 166 62 39 chr1 104906825 104907084 -177286580 + AluJo SINE Alu 42 306 -6 1824 171 20 0 chr1 104907225 104907523 -177286141 - AluJo SINE Alu -8 304 1 2319 97 0 0 chr1 104907686 104907985 -177285679 + AluSx SINE Alu 1 299 -13 1057 155 75 31 chr1 104908190 104908416 -177285248 - MER46A DNA MER2_type 0 236 1 1919 157 0 3 chr1 104908507 104908812 -177284852 + AluJo SINE Alu 3 306 -6 440 255 38 57 chr1 104909120 104909277 -177284387 + MER5A DNA MER1_type 36 189 0 373 270 43 26 chr1 104909438 104909553 -177284111 - MIR SINE MIR -143 119 3 2403 100 0 0 chr1 104909626 104909937 -177283727 + AluY SINE Alu 1 311 0 286 321 64 0 chr1 104910399 104910508 -177283156 - MIR SINE MIR -29 233 118 193 322 68 0 chr1 104910637 104910696 -177282968 - L2 LINE L2 -9 3263 3201 961 262 117 19 chr1 104910774 104911083 -177282581 - LTR33 LTR ERVL 0 521 151 2093 102 7 0 chr1 104911083 104911358 -177282306 + AluSx SINE Alu 26 302 -10 961 262 117 19 chr1 104911358 104911510 -177282154 - LTR33 LTR ERVL -370 151 15 231 189 176 40 chr1 104911692 104911766 -177281898 - MER5B DNA MER1_type -66 112 29 213 301 54 32 chr1 104911791 104911884 -177281780 - L2 LINE L2 -423 2891 2797 35 0 0 0 chr1 104912330 104912365 -177281299 + AT_rich Low_complexity Low_complexity 1 35 0 1665 144 70 21 chr1 104912371 104912656 -177281008 + AluJb SINE Alu 1 299 -13 431 281 97 56 chr1 104913008 104913204 -177280460 - L1 LINE L1 -1807 4339 4136 339 264 91 9 chr1 104913408 104913518 -177280146 + MIR SINE MIR 111 229 -33 720 260 36 10 chr1 104913979 104914171 -177279493 - MIR SINE MIR -64 198 2 553 354 23 0 chr1 104914173 104914348 -177279316 - L2 LINE L2 -590 2724 2546 470 199 168 12 chr1 104915789 104915950 -177277714 + L1MC4 LINE L1 6468 6653 -1389 6712 65 156 31 chr1 104916122 104917247 -177276417 - MER11A LTR ERVK 0 1266 1 273 202 172 50 chr1 104917474 104917573 -177276091 + MIR SINE MIR 96 206 -56 2076 58 106 7 chr1 104917682 104917957 -177275707 - AluY SINE Alu -9 302 1 1974 122 3 11 chr1 104918973 104919290 -177274374 + AluJb SINE Alu 1 315 0 24 53 0 0 chr1 104919504 104919542 -177274122 + AT_rich Low_complexity Low_complexity 1 38 0 1786 149 29 29 chr1 104919706 104919844 -177273820 + AluJb SINE Alu 1 138 -174 2456 57 3 0 chr1 104919844 104920142 -177273522 + AluY SINE Alu 12 310 -1 1786 149 29 29 chr1 104920142 104920311 -177273353 + AluJb SINE Alu 137 308 -4 343 273 165 8 chr1 104921008 104921036 -177272628 + MIR3 SINE MIR 60 82 -126 2235 101 0 0 chr1 104921036 104921322 -177272342 - AluSg SINE Alu -24 286 1 343 273 165 8 chr1 104921322 104921414 -177272250 + MIR3 SINE MIR 82 199 -9 1933 151 16 7 chr1 104921969 104922273 -177271391 + AluJo SINE Alu 3 309 -3 27 29 0 0 chr1 104922486 104922520 -177271144 + AT_rich Low_complexity Low_complexity 1 34 0 222 269 108 90 chr1 104922756 104922799 -177270865 - MIR SINE MIR -27 235 194 2226 95 0 10 chr1 104922799 104923093 -177270571 - AluSg SINE Alu -19 291 1 222 269 108 90 chr1 104923093 104923216 -177270448 - MIR SINE MIR -68 194 66 413 250 19 10 chr1 104923576 104923680 -177269984 - MIR SINE MIR -51 211 107 1821 267 127 9 chr1 104923727 104924308 -177269356 + L2 LINE L2 1372 2021 -1293 1728 291 130 64 chr1 104924800 104925358 -177268306 + L2 LINE L2 2007 2527 -787 212 86 29 0 chr1 104925358 104925393 -177268271 + (TG)n Simple_repeat Simple_repeat 2 37 0 1728 291 130 64 chr1 104925393 104925426 -177268238 + L2 LINE L2 2527 2556 -758 761 164 0 8 chr1 104925426 104925548 -177268116 - 5S rRNA rRNA 0 121 1 1728 291 130 64 chr1 104925548 104925829 -177267835 + L2 LINE L2 2556 2938 -376 1665 264 94 63 chr1 104925886 104926713 -177266951 - L2 LINE L2 -1782 1532 680 21 36 0 0 chr1 104926718 104926746 -177266918 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 104927254 104927282 -177266382 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 104927469 104927504 -177266160 + AT_rich Low_complexity Low_complexity 1 35 0 1709 147 14 34 chr1 104928047 104928340 -177265324 - AluJo SINE Alu -25 287 1 866 163 0 69 chr1 104928481 104928641 -177265023 - FRAM SINE Alu -19 157 9 334 179 0 0 chr1 104928668 104928724 -177264940 - AluJ/FLAM SINE Alu -238 64 9 27 73 0 0 chr1 104928985 104929040 -177264624 + AT_rich Low_complexity Low_complexity 1 55 0 444 221 59 15 chr1 104929493 104929629 -177264035 + Charlie7 DNA MER1_type 36 177 -2435 570 165 16 30 chr1 104929661 104929914 -177263750 + AluJo SINE Alu 1 311 -1 1353 169 0 0 chr1 104930110 104930311 -177263353 + AluJb SINE Alu 34 234 -78 532 145 0 0 chr1 104930319 104930402 -177263262 + FRAM SINE Alu 22 104 -72 2301 138 82 17 chr1 104930451 104930913 -177262751 - L1MB3 LINE L1 -1 6182 5691 2053 261 49 31 chr1 104930998 104931646 -177262018 - MER21B LTR ERV1 -61 802 143 2450 98 22 27 chr1 104931797 104932163 -177261501 - THE1B LTR MaLR 0 364 1 1422 225 276 30 chr1 104932178 104933019 -177260645 + Charlie7 DNA MER1_type 910 1957 -655 1002 164 80 177 chr1 104933018 104933352 -177260312 - MLT2D LTR ERVL -6 408 128 * 1146 247 40 24 chr1 104933352 104933510 -177260154 - AluJo SINE Alu -1 301 134 1621 190 18 11 chr1 104933510 104933789 -177259875 - AluJb SINE Alu -21 291 11 1146 247 40 24 chr1 104933789 104933926 -177259738 - AluJo SINE Alu -168 134 1 1002 164 80 177 chr1 104933926 104934043 -177259621 - MLT2D LTR ERVL -286 128 1 1168 198 97 74 chr1 104934046 104934066 -177259598 + Charlie7 DNA MER1_type 1974 1992 -620 2303 72 3 10 chr1 104934066 104934357 -177259307 - AluY SINE Alu -22 289 1 1168 198 97 74 chr1 104934357 104934727 -177258937 + Charlie7 DNA MER1_type 1992 2386 -226 2325 97 0 0 chr1 104934727 104935015 -177258649 - AluSx SINE Alu -24 288 1 1168 198 97 74 chr1 104935015 104935243 -177258421 + Charlie7 DNA MER1_type 2386 2607 -5 204 182 30 30 chr1 104935356 104935422 -177258242 + T-rich Low_complexity Low_complexity 4 69 0 362 297 52 32 chr1 104935896 104936051 -177257613 - MIR SINE MIR -68 194 37 310 262 39 29 chr1 104936050 104936153 -177257511 - L2 LINE L2 -1 3271 3168 * 265 279 0 15 chr1 104937545 104937613 -177256051 + GA-rich Low_complexity Low_complexity 1 67 0 22 35 0 0 chr1 104938172 104938201 -177255463 + AT_rich Low_complexity Low_complexity 1 29 0 1982 145 128 27 chr1 104938372 104938785 -177254879 - MSTB2 LTR MaLR 0 457 3 452 282 124 73 chr1 104938902 104939424 -177254240 + L1ME4a LINE L1 5568 6116 -5 29 47 0 0 chr1 104939468 104939511 -177254153 + AT_rich Low_complexity Low_complexity 1 43 0 2286 100 106 0 chr1 104940186 104940525 -177253139 - THE1C LTR MaLR 0 375 1 1049 59 0 0 chr1 104941478 104941614 -177252050 + THE1A LTR MaLR 220 355 0 1447 181 152 6 chr1 104941685 104942203 -177251461 - L1M2 LINE L1 -748 5564 4949 813 93 0 0 chr1 104942203 104942310 -177251354 - AluSg/q SINE Alu -9 304 198 4366 44 53 4 chr1 104942310 104942873 -177250791 - LTR10C LTR ERV1 0 591 1 1578 101 0 0 chr1 104942873 104943072 -177250592 - AluSg SINE Alu -111 199 1 30 59 0 0 chr1 104943187 104943238 -177250426 + AT_rich Low_complexity Low_complexity 1 51 0 468 0 0 0 chr1 104944152 104944204 -177249460 + (CA)n Simple_repeat Simple_repeat 2 53 0 441 81 0 0 chr1 104944204 104944266 -177249398 + (TC)n Simple_repeat Simple_repeat 1 62 0 2110 130 0 0 chr1 104944744 104945044 -177248620 - AluSx SINE Alu -12 300 1 23 0 0 0 chr1 104945047 104945070 -177248594 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 104945194 104945217 -177248447 + AT_rich Low_complexity Low_complexity 1 23 0 1801 164 7 7 chr1 104945309 104945602 -177248062 + AluSx SINE Alu 1 293 -19 818 277 213 0 chr1 104945991 104946287 -177247377 - MLT1K LTR MaLR 0 588 230 40368 36 25 3 chr1 104946843 104948927 -177244737 + L1PA3 LINE L1 4 2042 -4113 2808 7 0 0 chr1 104948927 104949231 -177244433 + AluYa5 SINE Alu 1 304 -7 40368 36 25 3 chr1 104949231 104953170 -177240494 + L1PA3 LINE L1 2042 6155 0 594 40 0 13 chr1 104953517 104953592 -177240072 - tRNA-Cys-TGC tRNA tRNA -1 74 1 1245 108 70 16 chr1 104953776 104953961 -177239703 + AluSq SINE Alu 1 195 -118 1811 142 3 21 chr1 104954229 104954553 -177239111 - AluSx SINE Alu 0 353 35 906 178 0 18 chr1 104954564 104954733 -177238931 - FRAM SINE Alu 0 166 1 493 228 20 0 chr1 104954809 104954910 -177238754 - MER58A DNA MER1_type 0 141 39 438 277 163 6 chr1 104955105 104955271 -177238393 + MIR SINE MIR 59 250 -12 21 36 0 0 chr1 104955670 104955698 -177237966 + AT_rich Low_complexity Low_complexity 1 28 0 1114 150 60 17 chr1 104955937 104956170 -177237494 - L1MB7 LINE L1 -8 6176 5934 194 324 56 47 chr1 104956463 104956676 -177236988 + L2 LINE L2 2809 3023 -249 236 216 196 20 chr1 104956788 104956890 -177236774 - Charlie7 DNA MER1_type 0 2612 2493 1466 140 17 30 chr1 104956920 104957155 -177236509 + AluJo SINE Alu 11 242 -70 290 296 172 11 chr1 104957312 104957498 -177236166 + L2 LINE L2 3098 3313 0 807 204 251 12 chr1 104957610 104957865 -177235799 - MER5C DNA MER1_type 0 324 9 498 211 124 87 chr1 104957877 104958012 -177235652 - MIR SINE MIR -50 212 84 1939 117 36 0 chr1 104958012 104958286 -177235378 + AluSx SINE Alu 1 284 -28 423 38 0 0 chr1 104958288 104958341 -177235323 + (CCAA)n Simple_repeat Simple_repeat 2 54 0 498 211 124 87 chr1 104958341 104958387 -177235277 - MIR SINE MIR -178 84 21 260 276 95 29 chr1 104958489 104958594 -177235070 + L3b LINE CR1 1202 1313 -270 1225 187 113 20 chr1 104958718 104959018 -177234646 + MER2 DNA MER2_type 18 345 0 42 82 0 0 chr1 104959405 104959503 -177234161 + AT_rich Low_complexity Low_complexity 1 98 0 1370 221 64 16 chr1 104960912 104961224 -177232440 + MER58B DNA MER1_type 7 333 -8 215 95 48 0 chr1 104961437 104961479 -177232185 + T-rich Low_complexity Low_complexity 2 45 0 186 43 0 0 chr1 104961821 104961844 -177231820 + (T)n Simple_repeat Simple_repeat 1 23 0 357 308 0 0 chr1 104961970 104962074 -177231590 + MIR3 SINE MIR 102 205 -3 223 389 56 0 chr1 104963063 104963135 -177230529 - L2 LINE L2 -61 3211 3136 302 279 61 7 chr1 104963209 104963356 -177230308 + HAL1 LINE L1 1910 2064 -443 491 320 76 26 chr1 104963510 104963813 -177229851 - MLT1L LTR MaLR -95 520 203 3460 266 88 41 chr1 104964729 104966232 -177227432 + HAL1 LINE L1 574 2148 -359 294 324 19 0 chr1 104966256 104966361 -177227303 + L1MEd LINE L1 567 673 -5446 28 0 0 0 chr1 104966436 104966464 -177227200 + AT_rich Low_complexity Low_complexity 1 28 0 1048 53 0 0 chr1 104966693 104966824 -177226840 - L1PA7 LINE L1 -10 6144 6014 333 198 8 151 chr1 104967691 104967817 -177225847 - MER92B LTR ERV1 -16 620 513 27 29 0 0 chr1 104967817 104967851 -177225813 + AT_rich Low_complexity Low_complexity 1 34 0 2430 66 0 13 chr1 104969429 104969732 -177223932 + AluSc SINE Alu 1 299 -10 21 57 0 0 chr1 104973380 104973415 -177220249 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 104974099 104974123 -177219541 + AT_rich Low_complexity Low_complexity 1 24 0 289 306 20 10 chr1 104974587 104974685 -177218979 + CT-rich Low_complexity Low_complexity 2 100 0 24 32 0 0 chr1 104975080 104975111 -177218553 + AT_rich Low_complexity Low_complexity 1 31 0 766 161 0 0 chr1 104975112 104975230 -177218434 - FLAM_C SINE Alu -20 123 6 180 77 0 0 chr1 104977308 104977334 -177216330 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 213 0 0 chr1 104977412 104977459 -177216205 + (TA)n Simple_repeat Simple_repeat 1 47 0 21 89 0 0 chr1 104979283 104979339 -177214325 + AT_rich Low_complexity Low_complexity 1 56 0 788 154 0 63 chr1 104979393 104979536 -177214128 + FRAM SINE Alu 22 155 -21 207 0 0 0 chr1 104979686 104979709 -177213955 + (A)n Simple_repeat Simple_repeat 1 23 0 2322 73 0 38 chr1 104980019 104980336 -177213328 - AluSq SINE Alu -8 305 1 21 0 0 0 chr1 104981287 104981308 -177212356 + AT_rich Low_complexity Low_complexity 1 21 0 271 247 157 0 chr1 104981958 104982047 -177211617 + L3b LINE CR1 1261 1363 -220 2236 223 27 19 chr1 104982115 104982635 -177211029 + MER82 DNA MER2_type 4 527 -126 518 331 154 30 chr1 104982841 104983542 -177210122 - L2 LINE L2 -577 2737 1950 383 297 55 30 chr1 104985207 104985372 -177208292 + MIR SINE MIR 46 214 -48 21 36 0 0 chr1 104985630 104985658 -177208006 + AT_rich Low_complexity Low_complexity 1 28 0 568 216 156 60 chr1 104985747 104985946 -177207718 - MLT1K LTR MaLR -4 584 367 702 203 39 0 chr1 104987445 104987573 -177206091 + FLAM_A SINE Alu 1 133 0 275 325 24 16 chr1 104987905 104988028 -177205636 + MIR SINE MIR 88 211 -51 1079 123 92 10 chr1 104992784 104992979 -177200685 - MER46A DNA MER2_type 0 236 26 180 0 0 0 chr1 104993002 104993022 -177200642 + (A)n Simple_repeat Simple_repeat 1 20 0 267 282 153 46 chr1 104993241 104993372 -177200292 + L3 LINE CR1 322 466 -1111 540 178 206 45 chr1 104994115 104994362 -177199302 - L1ME2 LINE L1 -262 5885 5599 4983 179 51 14 chr1 104994379 104994752 -177198912 - L1PA16 LINE L1 -18 6146 5788 2369 81 14 0 chr1 104994752 104995049 -177198615 - AluSq SINE Alu -12 301 1 4983 179 51 14 chr1 104995049 104996536 -177197128 - L1PA16 LINE L1 -376 5788 4125 532 291 85 16 chr1 104996548 104996867 -177196797 - L1ME2 LINE L1 -567 5580 5240 1587 207 69 45 chr1 104996899 104997319 -177196345 - MLT1F LTR MaLR -110 432 3 417 285 141 0 chr1 104997366 104997615 -177196049 - L1ME2 LINE L1 -946 5183 4900 440 267 118 69 chr1 104997723 104997985 -177195679 - L1ME2 LINE L1 -5533 586 312 280 306 127 15 chr1 104998113 104998247 -177195417 - L1ME2 LINE L1 -5967 152 4 182 305 93 68 chr1 104998757 104998875 -177194789 - MIR3 SINE MIR -85 123 3 2492 50 7 7 chr1 104999732 105000034 -177193630 + AluY SINE Alu 3 304 -7 2998 205 91 22 chr1 105000309 105000933 -177192731 - L1ME1 LINE L1 -5 6161 5582 2266 109 0 3 chr1 105000933 105001236 -177192428 - AluSx SINE Alu -10 302 1 2998 205 91 22 chr1 105001236 105001525 -177192139 - L1ME1 LINE L1 -584 5582 5314 2328 68 58 0 chr1 105001525 105001820 -177191844 - AluSp SINE Alu -1 312 1 2998 205 91 22 chr1 105001820 105002091 -177191573 - L1ME1 LINE L1 -852 5314 4811 1240 132 162 45 chr1 105002343 105002608 -177191056 - AluSq SINE Alu -17 296 1 314 295 14 36 chr1 105003198 105003337 -177190327 + L2 LINE L2 2624 2759 -555 2092 96 0 25 chr1 105003990 105004270 -177189394 - AluSx SINE Alu -39 273 1 2341 104 3 0 chr1 105005147 105005455 -177188209 + AluSx SINE Alu 1 309 -3 276 291 48 0 chr1 105005955 105006058 -177187606 - L1MC/D LINE L1 -1947 5861 5754 975 175 7 0 chr1 105006072 105006226 -177187438 - AluJb SINE Alu -19 293 139 506 193 143 0 chr1 105006451 105006570 -177187094 - MIR SINE MIR -71 191 56 2355 105 0 0 chr1 105008164 105008460 -177185204 + AluSx SINE Alu 1 296 -16 1887 145 53 0 chr1 105008471 105008753 -177184911 + AluSx SINE Alu 3 299 -13 370 258 126 82 chr1 105010238 105010371 -177183293 + MIR SINE MIR 73 218 -44 1778 137 21 7 chr1 105010371 105010656 -177183008 + AluSx SINE Alu 16 304 -8 370 258 126 82 chr1 105010656 105010704 -177182960 + MIR SINE MIR 218 262 0 205 309 0 0 chr1 105010747 105010802 -177182862 + CT-rich Low_complexity Low_complexity 6 60 0 2212 109 3 3 chr1 105010847 105011171 -177182493 - AluJb SINE Alu 0 324 1 504 273 55 0 chr1 105012328 105012456 -177181208 - MER3 DNA MER1_type -74 135 1 1786 182 10 0 chr1 105014115 105014411 -177179253 + AluJo SINE Alu 1 299 -13 184 171 0 0 chr1 105014728 105014763 -177178901 + MIR SINE MIR 110 144 -64 301 245 282 25 chr1 105016069 105016232 -177177432 - MIR SINE MIR -10 252 48 1754 174 12 3 chr1 105017686 105018013 -177175651 - MER2 DNA MER2_type 0 345 16 2152 134 0 3 chr1 105018121 105018419 -177175245 + AluJb SINE Alu 1 297 -15 371 285 62 56 chr1 105018518 105018654 -177175010 + HAL1b LINE L1 1167 1306 -42 2134 115 14 0 chr1 105018654 105018949 -177174715 - AluSp SINE Alu -14 299 1 371 285 62 56 chr1 105018949 105018991 -177174673 + HAL1b LINE L1 1306 1346 -2 597 253 175 0 chr1 105020940 105021106 -177172558 + MIR SINE MIR 33 227 -35 1307 131 0 0 chr1 105022983 105023159 -177170505 - AluJ SINE Alu -14 298 123 6711 73 28 29 chr1 105023162 105024078 -177169586 - L1MA1 LINE L1 -4 6298 5382 1799 113 38 0 chr1 105024078 105024317 -177169347 - AluSx SINE Alu -64 248 1 6711 73 28 29 chr1 105024317 105024432 -177169232 - L1MA1 LINE L1 -920 5382 5268 852 185 0 0 chr1 105024432 105024562 -177169102 - AluJ SINE Alu -176 136 7 502 282 150 24 chr1 105024597 105024810 -177168854 - MIR SINE MIR 0 262 23 210 414 41 0 chr1 105025258 105025403 -177168261 + L2 LINE L2 2127 2277 -1037 226 362 68 30 chr1 105025760 105025995 -177167669 + L2 LINE L2 2807 3050 -222 539 318 60 37 chr1 105026825 105027174 -177166490 - L2 LINE L2 -2 3311 2955 551 277 108 0 chr1 105027532 105027680 -177165984 + MIR SINE MIR 33 196 -66 233 279 184 39 chr1 105028040 105028219 -177165445 + L1ME4a LINE L1 5729 5933 -188 216 0 0 0 chr1 105028411 105028435 -177165229 + (A)n Simple_repeat Simple_repeat 1 24 0 2306 118 0 0 chr1 105028437 105028734 -177164930 + AluSx SINE Alu 3 299 -13 648 193 269 42 chr1 105030055 105030319 -177163345 + MER5C DNA MER1_type 1 324 0 1864 119 28 75 chr1 105030599 105030917 -177162747 - AluJb SINE Alu -9 303 1 261 0 0 0 chr1 105030971 105031000 -177162664 + (CAA)n Simple_repeat Simple_repeat 2 30 0 301 225 93 101 chr1 105031341 105031470 -177162194 + L2 LINE L2 3168 3295 -18 609 235 77 34 chr1 105031517 105031883 -177161781 + MLT1J LTR MaLR 36 509 -2 203 284 50 113 chr1 105031931 105032153 -177161511 - L3b LINE CR1 -219 1364 1157 227 158 0 53 chr1 105032543 105032600 -177161064 + GA-rich Low_complexity Low_complexity 4 57 0 231 222 83 0 chr1 105033602 105033674 -177159990 - L3b LINE CR1 -380 1203 1126 690 200 71 29 chr1 105034726 105034896 -177158768 + MIR SINE MIR 65 241 -21 22 0 0 0 chr1 105035599 105035621 -177158043 + AT_rich Low_complexity Low_complexity 1 22 0 217 368 18 0 chr1 105035880 105035994 -177157670 + MIR SINE MIR 31 146 -116 248 332 24 44 chr1 105036317 105036567 -177157097 + MLT1K LTR MaLR 183 427 -161 298 317 0 0 chr1 105036599 105036681 -177156983 + MLT1K LTR MaLR 500 581 -7 184 289 172 66 chr1 105036888 105037144 -177156520 + L2 LINE L2 2219 2501 -813 305 263 66 0 chr1 105038091 105038167 -177155497 + L2 LINE L2 3172 3252 -20 335 278 133 26 chr1 105038274 105038425 -177155239 + MIR SINE MIR 85 251 -11 877 126 175 0 chr1 105039351 105039494 -177154170 - FRAM SINE Alu -8 168 1 544 324 7 7 chr1 105040549 105040685 -177152979 + MER91B DNA MER1_type 47 182 -8 462 325 159 20 chr1 105043623 105044263 -177149401 - L2 LINE L2 -733 2581 1853 894 250 42 4 chr1 105044265 105044501 -177149163 + L1PB4 LINE L1 5912 6156 0 222 290 101 31 chr1 105044862 105045056 -177148608 + L2 LINE L2 2799 3090 -182 267 259 116 26 chr1 105046960 105047149 -177146515 + L2 LINE L2 2848 3053 -219 280 329 24 41 chr1 105047484 105047654 -177146010 + L2 LINE L2 2815 2981 -291 2026 84 99 4 chr1 105047906 105048179 -177145485 + AluSq SINE Alu 1 299 -14 195 42 0 0 chr1 105052244 105052268 -177141396 + (T)n Simple_repeat Simple_repeat 1 24 0 1278 71 56 66 chr1 105056093 105056168 -177137496 - MER107 DNA MER1_type -2 195 121 2307 62 19 53 chr1 105056168 105056488 -177137176 - AluSc SINE Alu 0 309 1 1278 71 56 66 chr1 105056488 105056609 -177137055 - MER107 DNA MER1_type -76 121 1 468 263 211 6 chr1 105057113 105057284 -177136380 + MIR SINE MIR 46 251 -11 2181 89 0 86 chr1 105059105 105059441 -177134223 - AluSg SINE Alu -3 307 1 260 322 84 42 chr1 105060632 105060871 -177132793 + MLT1K LTR MaLR 168 416 -172 2381 75 0 3 chr1 105062171 105062463 -177131201 + AluY SINE Alu 1 291 -20 6210 189 50 20 chr1 105063667 105065079 -177128585 + Charlie1a DNA MER1_type 1 1455 0 762 236 189 34 chr1 105065414 105066130 -177127534 + L2 LINE L2 2465 3297 -16 459 248 188 5 chr1 105066130 105066332 -177127332 + L1MC4a LINE L1 5670 5908 -1900 1074 50 163 0 chr1 105067304 105067464 -177126200 + L1MA3 LINE L1 6120 6305 0 1856 156 0 32 chr1 105067583 105067897 -177125767 + AluJb SINE Alu 1 304 -8 452 251 146 37 chr1 105068016 105068202 -177125462 - MIR SINE MIR -4 258 37 1879 176 69 29 chr1 105068202 105068651 -177125013 - MLT1C LTR MaLR 0 467 1 452 251 146 37 chr1 105068651 105068691 -177124973 - MIR SINE MIR -225 37 3 735 197 34 7 chr1 105069576 105069723 -177123941 + Tigger5 DNA MER2_type 9 159 -2164 790 134 0 0 chr1 105069741 105069860 -177123804 + Tigger5 DNA MER2_type 2205 2323 0 956 223 81 32 chr1 105069860 105070010 -177123654 - MER58 DNA MER1_type -81 260 92 1966 100 4 4 chr1 105070010 105070269 -177123395 + AluSq SINE Alu 33 291 -22 956 223 81 32 chr1 105070269 105070365 -177123299 - MER58 DNA MER1_type -249 92 2 1868 101 56 21 chr1 105070880 105071166 -177122498 - AluSg SINE Alu -14 296 1 1463 234 73 52 chr1 105071189 105071485 -177122179 - L1ME1 LINE L1 -6 6160 5871 2325 88 77 43 chr1 105071485 105071651 -177122013 + THE1B LTR MaLR 1 160 -204 2022 138 0 10 chr1 105071651 105071972 -177121692 + AluSx SINE Alu 1 312 0 2325 88 77 43 chr1 105071972 105072157 -177121507 + THE1B LTR MaLR 160 364 0 1463 234 73 52 chr1 105072157 105072193 -177121471 - L1ME1 LINE L1 -295 5871 5837 1609 166 48 7 chr1 105072193 105072483 -177121181 + AluJo SINE Alu 1 302 -10 1463 234 73 52 chr1 105072483 105072644 -177121020 - L1ME1 LINE L1 -329 5837 5656 1808 177 7 3 chr1 105074056 105074356 -177119308 + AluJo SINE Alu 1 301 -11 2048 98 58 0 chr1 105074417 105074694 -177118970 - AluSx SINE Alu -17 295 3 2344 90 0 0 chr1 105075213 105075503 -177118161 + AluY SINE Alu 5 294 -17 2481 83 0 0 chr1 105076717 105077017 -177116647 - AluSq SINE Alu -12 301 2 295 250 40 80 chr1 105078161 105078261 -177115403 + MER91C DNA MER1_type 27 122 -18 1189 203 84 42 chr1 105079036 105079347 -177114317 + MER46C DNA MER2_type 3 326 -12 2232 99 3 0 chr1 105080187 105080481 -177113183 + AluSp SINE Alu 1 295 -18 2114 111 0 66 chr1 105080483 105080816 -177112848 + AluSx SINE Alu 1 311 -1 1091 207 34 50 chr1 105080839 105081154 -177112510 + L1MA9 LINE L1 5959 6270 -42 5270 105 29 11 chr1 105081154 105081919 -177111745 + MER4E LTR ERV1 1 779 0 3827 113 13 11 chr1 105081926 105082465 -177111199 + MER4E-int LTR ERV1 8 547 -6211 2666 104 157 25 chr1 105082458 105082936 -177110728 + MER4E-int LTR ERV1 675 1177 -5421 * 3069 138 69 45 chr1 105082998 105083562 -177110102 + MER4E-int LTR ERV1 1460 1870 -4728 2430 83 3 0 chr1 105083562 105083863 -177109801 + AluSp SINE Alu 1 302 -11 3069 138 69 45 chr1 105083863 105084494 -177109170 + MER4E-int LTR ERV1 1870 2485 -4113 389 80 0 0 chr1 105084505 105084555 -177109109 + MER4B-int LTR ERV1 4018 4067 -2691 975 111 28 0 chr1 105084564 105084708 -177108956 + MER4B-int LTR ERV1 4452 4599 -2159 364 209 313 0 chr1 105084708 105084823 -177108841 - MER3 DNA MER1_type -55 154 4 2207 90 21 7 chr1 105085025 105085313 -177108351 - AluSx SINE Alu -18 294 3 325 308 54 8 chr1 105086920 105087050 -177106614 + L3 LINE CR1 349 484 -1093 2079 126 11 0 chr1 105087351 105087637 -177106027 + AluSx SINE Alu 5 293 -19 729 245 21 56 chr1 105087674 105087907 -177105757 + MIR SINE MIR 13 237 -25 559 310 143 51 chr1 105087997 105088659 -177105005 + L3 LINE CR1 778 1500 -77 257 241 190 26 chr1 105088704 105088820 -177104844 - MIR SINE MIR -10 252 118 21 0 0 0 chr1 105089591 105089612 -177104052 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 105089878 105089902 -177103762 + AT_rich Low_complexity Low_complexity 1 24 0 338 304 123 64 chr1 105090772 105091130 -177102534 - L2 LINE L2 -4 3268 2890 1436 212 245 39 chr1 105091351 105091861 -177101803 + MLT1E3 LTR MaLR 2 616 -8 864 291 107 24 chr1 105091872 105092294 -177101370 + L2 LINE L2 2849 3305 -8 508 345 57 18 chr1 105092359 105092748 -177100916 - L2 LINE L2 -466 2848 2445 211 133 44 44 chr1 105092770 105092815 -177100849 + L2 LINE L2 3265 3309 -4 226 270 122 0 chr1 105093329 105093444 -177100220 - L1MEd LINE L1 -4840 1291 1163 1303 251 93 62 chr1 105093456 105093850 -177099814 - L1MEd LINE L1 -4928 1191 764 1450 168 141 0 chr1 105093850 105094112 -177099552 - AluJo SINE Alu -3 299 1 1303 251 93 62 chr1 105094112 105094430 -177099234 - L1MEd LINE L1 -5355 764 457 959 231 80 129 chr1 105094497 105095189 -177098475 + L1M4 LINE L1 3442 4091 -2055 2191 93 21 0 chr1 105095189 105095480 -177098184 - AluSc SINE Alu -12 297 1 959 231 80 129 chr1 105095480 105095585 -177098079 + L1M4 LINE L1 4091 4200 -1946 1593 123 13 21 chr1 105095673 105095909 -177097755 + AluJb SINE Alu 65 298 -14 1748 156 7 42 chr1 105096426 105096734 -177096930 - AluJo SINE Alu -15 297 1 264 293 53 0 chr1 105097185 105097260 -177096404 + L2 LINE L2 3136 3214 -58 270 0 0 0 chr1 105097295 105097325 -177096339 + (TG)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr1 105097948 105097975 -177095689 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1019 137 0 0 chr1 105097977 105098123 -177095541 - AluSg/x SINE Alu -33 279 134 2257 92 0 36 chr1 105098123 105098285 -177095379 - AluSq SINE Alu -18 295 148 2369 88 3 0 chr1 105098285 105098580 -177095084 - AluSp SINE Alu -17 296 1 2257 92 0 36 chr1 105098580 105098723 -177094941 - AluSq SINE Alu -165 148 1 2133 111 7 13 chr1 105098732 105099030 -177094634 - AluSx SINE Alu -16 296 1 516 329 209 35 chr1 105099382 105100215 -177093449 - L3 LINE CR1 -483 1094 117 216 258 124 0 chr1 105100911 105101000 -177092664 + L2 LINE L2 3214 3313 0 2350 87 3 3 chr1 105101362 105101660 -177092004 - AluSp SINE Alu -15 298 1 794 258 87 99 chr1 105102696 105103445 -177090219 + L2 LINE L2 2049 2788 -526 655 186 150 0 chr1 105103457 105103650 -177090014 - Charlie5 DNA MER1_type -27 2585 2364 363 344 33 0 chr1 105103767 105103889 -177089775 + L2 LINE L2 3146 3271 -1 294 264 23 23 chr1 105104300 105104387 -177089277 - MIR SINE MIR -76 132 46 182 236 28 42 chr1 105104673 105104745 -177088919 - MIR SINE MIR -153 109 39 2292 116 0 7 chr1 105105944 105106254 -177087410 - AluSx SINE Alu -4 308 1 2283 114 3 6 chr1 105107006 105107339 -177086325 + L1PB1 LINE L1 5820 6151 0 210 312 64 18 chr1 105107805 105107914 -177085750 + MIR SINE MIR 43 156 -106 2167 118 0 7 chr1 105108246 105108534 -177085130 - AluSg SINE Alu -24 286 1 472 294 119 50 chr1 105110157 105110500 -177083164 + L2 LINE L2 2849 3215 -98 978 218 29 60 chr1 105111213 105111519 -177082145 + L1MC5 LINE L1 7628 7925 -36 2041 99 15 0 chr1 105111519 105111791 -177081873 - AluSg SINE Alu -34 276 1 225 0 0 0 chr1 105113167 105113192 -177080472 + (A)n Simple_repeat Simple_repeat 1 25 0 258 279 47 58 chr1 105115530 105115702 -177077962 + L2 LINE L2 2829 2998 -274 1998 211 63 38 chr1 105115704 105116225 -177077439 - MLT1F LTR MaLR -2 540 7 1042 267 67 0 chr1 105116336 105116606 -177077058 - MLT1H LTR MaLR -251 298 11 372 171 0 66 chr1 105116618 105116694 -177076970 + L2 LINE L2 3243 3313 0 471 281 179 10 chr1 105116932 105117128 -177076536 + MIR SINE MIR 24 252 -10 571 334 63 1 chr1 105117587 105117818 -177075846 - MIR SINE MIR -13 249 6 1042 198 20 0 chr1 105117968 105118165 -177075499 + MER3 DNA MER1_type 8 208 -1 189 195 0 0 chr1 105118812 105118853 -177074811 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 2376 52 3 0 chr1 105118944 105119232 -177074432 - AluY SINE Alu -22 289 1 375 316 36 7 chr1 105119268 105119407 -177074257 + L2 LINE L2 3162 3304 -9 21 57 0 0 chr1 105119727 105119762 -177073902 + AT_rich Low_complexity Low_complexity 1 35 0 322 104 21 0 chr1 105120003 105120051 -177073613 - L2 LINE L2 -3 3310 3262 330 306 9 18 chr1 105120370 105120481 -177073183 - MIR SINE MIR -119 143 34 192 250 0 54 chr1 105121290 105121346 -177072318 + MIR SINE MIR 25 77 -131 191 343 78 0 chr1 105121365 105121467 -177072197 + L2 LINE L2 2724 2833 -481 970 295 58 25 chr1 105121467 105121860 -177071804 - LTR16C LTR ERVL 0 491 86 1710 219 108 11 chr1 105121912 105122346 -177071318 + MLT1H LTR MaLR 71 546 -3 2084 101 27 10 chr1 105122394 105122692 -177070972 + AluSx SINE Alu 1 303 -9 24 0 0 0 chr1 105123052 105123076 -177070588 + AT_rich Low_complexity Low_complexity 1 24 0 690 266 112 19 chr1 105123388 105123602 -177070062 + MIR SINE MIR 8 241 -21 1868 157 0 22 chr1 105123634 105123953 -177069711 - AluJb SINE Alu 0 312 1 2329 69 3 7 chr1 105124287 105124593 -177069071 - AluY SINE Alu -6 305 1 660 200 0 17 chr1 105124853 105124973 -177068691 - FAM SINE Alu -16 169 52 383 333 8 0 chr1 105126278 105126398 -177067266 + L2 LINE L2 2935 3055 -217 450 287 261 11 chr1 105126746 105126934 -177066730 + MIR SINE MIR 28 262 0 467 298 25 61 chr1 105129970 105130215 -177063449 + L2 LINE L2 3078 3313 0 530 269 25 14 chr1 105130324 105130596 -177063068 - L1M LINE L1 -741 5423 5147 927 288 48 44 chr1 105130609 105131012 -177062652 - L1M4 LINE L1 -1048 5098 4689 1662 173 6 26 chr1 105131012 105131324 -177062340 - AluJo SINE Alu -6 306 1 927 288 48 44 chr1 105131324 105131539 -177062125 - L1M4 LINE L1 -1457 4689 4477 516 239 6 54 chr1 105131544 105131711 -177061953 + MER104 DNA Tc2 19 177 -3 251 236 109 33 chr1 105131829 105131967 -177061697 - L1M LINE L1 -744 5402 5273 436 309 49 25 chr1 105131992 105132196 -177061468 - L1MEd LINE L1 -5346 773 565 428 132 54 70 chr1 105132591 105132720 -177060944 - L1ME4a LINE L1 -11 6110 5984 1383 212 94 40 chr1 105132726 105133151 -177060513 + MLT1C LTR MaLR 8 455 -12 4131 123 66 85 chr1 105133151 105133951 -177059713 - LTR1 LTR ERV1 0 785 1 2118 149 37 0 chr1 105134112 105134460 -177059204 - MER47A DNA MER2_type 0 366 6 780 251 60 7 chr1 105134478 105134747 -177058917 - LTR16A LTR ERVL -97 360 58 204 309 32 53 chr1 105135370 105135464 -177058200 + L2 LINE L2 3216 3307 -6 3054 186 52 26 chr1 105135695 105136373 -177057291 + L1MC3 LINE L1 7062 7756 -29 447 19 0 0 chr1 105136593 105136645 -177057019 + (TAAAA)n Simple_repeat Simple_repeat 1 52 0 1935 153 0 6 chr1 105137284 105137597 -177056067 + AluSx SINE Alu 1 311 -1 209 361 9 9 chr1 105138608 105138716 -177054948 + (TG)n Simple_repeat Simple_repeat 1 108 0 658 300 39 54 chr1 105139802 105140082 -177053582 + L2 LINE L2 2987 3262 -10 21 0 0 0 chr1 105140428 105140449 -177053215 + AT_rich Low_complexity Low_complexity 1 21 0 2210 95 7 3 chr1 105141132 105141438 -177052226 - AluSq SINE Alu -6 307 1 732 222 70 0 chr1 105141847 105142018 -177051646 + MER5A DNA MER1_type 7 189 0 2036 201 42 31 chr1 105142185 105142642 -177051022 + MLT1C LTR MaLR 6 467 0 1491 196 10 14 chr1 105142794 105143085 -177050579 - AluJo SINE Alu -22 290 1 356 211 42 0 chr1 105143155 105143226 -177050438 + MIR SINE MIR 118 191 -71 189 74 0 0 chr1 105143573 105143600 -177050064 + (CAGGG)n Simple_repeat Simple_repeat 2 28 0 289 136 0 0 chr1 105143739 105143783 -177049881 - MER53 DNA DNA 0 189 146 637 233 7 27 chr1 105144501 105144647 -177049017 + MER45A DNA AcHobo 36 178 0 2257 100 0 3 chr1 105144704 105145015 -177048649 + AluSx SINE Alu 1 310 -2 918 256 64 0 chr1 105146282 105146501 -177047163 + MIR SINE MIR 18 250 -12 263 276 99 87 chr1 105146441 105146506 -177047158 - MIR SINE MIR -6 256 193 * 190 0 67 0 chr1 105146506 105146536 -177047128 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2006 99 7 7 chr1 105146539 105146822 -177046842 - AluSq SINE Alu -30 283 1 263 276 99 87 chr1 105146822 105146976 -177046688 - MIR SINE MIR -70 192 36 293 263 86 27 chr1 105149070 105149181 -177044483 - MIR SINE MIR -62 146 67 818 143 0 27 chr1 105150709 105150856 -177042808 + FLAM_C SINE Alu 1 143 0 320 323 193 17 chr1 105151643 105151996 -177041668 + L2 LINE L2 1750 2164 -1150 427 275 90 59 chr1 105152011 105152341 -177041323 + LTR67 LTR ERVL 3 367 -190 433 387 128 11 chr1 105152463 105152845 -177040819 + L2 LINE L2 2524 2950 -364 318 277 89 18 chr1 105153061 105153173 -177040491 - L2 LINE L2 0 3272 3153 194 276 95 9 chr1 105153391 105153496 -177040168 - L2 LINE L2 -1011 2303 2190 815 147 104 12 chr1 105153661 105153824 -177039840 + MER5B DNA MER1_type 1 178 0 493 200 43 50 chr1 105153925 105154065 -177039599 - L2 LINE L2 0 3313 3175 644 270 172 48 chr1 105154123 105154501 -177039163 - L2 LINE L2 -5 3308 2884 616 261 86 45 chr1 105154610 105154832 -177038832 + MIR SINE MIR 6 236 -26 25 51 0 0 chr1 105157262 105157301 -177036363 + GC_rich Low_complexity Low_complexity 1 39 0 1846 262 107 27 chr1 105157933 105158162 -177035502 + L1ME3A LINE L1 4713 4922 -1248 2200 86 7 0 chr1 105158162 105158454 -177035210 - AluSq SINE Alu -19 294 1 1846 262 107 27 chr1 105158454 105159536 -177034128 + L1ME3A LINE L1 4922 6161 -9 301 273 151 0 chr1 105159971 105160110 -177033554 + MIR SINE MIR 88 247 -15 340 250 33 0 chr1 105160138 105160230 -177033434 - MIR SINE MIR -71 191 97 233 209 0 0 chr1 105160239 105160282 -177033382 - L2 LINE L2 -4 3309 3267 2190 124 7 0 chr1 105160325 105160631 -177033033 - AluSx SINE Alu -4 308 1 200 200 0 0 chr1 105160702 105160737 -177032927 + MIR SINE MIR 221 255 -7 2149 244 158 14 chr1 105160791 105160955 -177032709 - L1MC4a LINE L1 -1656 6152 6013 258 81 0 0 chr1 105160955 105160992 -177032672 + (TG)n Simple_repeat Simple_repeat 2 38 0 2149 244 158 14 chr1 105160992 105161613 -177032051 - L1MC4a LINE L1 -1795 6013 5254 980 148 43 0 chr1 105161862 105162024 -177031640 + FAM SINE Alu 2 170 -5 270 262 208 18 chr1 105162083 105162251 -177031413 - MIR SINE MIR -28 234 35 180 286 18 0 chr1 105162511 105162567 -177031097 + L2 LINE L2 3021 3077 -195 2215 124 3 16 chr1 105162893 105163208 -177030456 - AluSx SINE Alu -1 311 1 2053 133 16 10 chr1 105164183 105164365 -177029299 - AluSx SINE Alu -1 311 125 295 21 64 0 chr1 105164365 105164412 -177029252 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 2053 133 16 10 chr1 105164412 105164538 -177029126 - AluSx SINE Alu -187 125 1 21 107 0 0 chr1 105164541 105164625 -177029039 + AT_rich Low_complexity Low_complexity 1 84 0 1465 132 23 137 chr1 105164806 105165148 -177028516 + AluYb8 SINE Alu 1 303 -5 247 248 119 18 chr1 105165635 105165744 -177027920 + L1MC/D LINE L1 5772 5891 -1917 824 220 112 0 chr1 105165943 105166157 -177027507 - MIR SINE MIR -13 249 12 514 270 130 14 chr1 105166189 105166404 -177027260 + MIR SINE MIR 20 259 -3 222 316 0 32 chr1 105166701 105166796 -177026868 - MIR3 SINE MIR -109 99 8 407 298 28 0 chr1 105168128 105168269 -177025395 - MIR SINE MIR -48 214 70 216 222 0 0 chr1 105168430 105168475 -177025189 + L2 LINE L2 3255 3299 -14 594 231 57 14 chr1 105169533 105169699 -177023965 - MIR SINE MIR -43 219 45 242 318 9 9 chr1 105170068 105170178 -177023486 + CT-rich Low_complexity Low_complexity 4 113 0 279 0 0 0 chr1 105221155 105221186 -176972478 + (CA)n Simple_repeat Simple_repeat 2 32 0 1650 179 42 71 chr1 105224163 105224388 -176969276 - L1MA10 LINE L1 0 6334 6125 2258 96 14 0 chr1 105224388 105224680 -176968984 - AluSg SINE Alu -14 296 1 1650 179 42 71 chr1 105224680 105224861 -176968803 - L1MA10 LINE L1 -209 6125 5940 2153 137 0 3 chr1 105225956 105226256 -176967408 + AluJb SINE Alu 1 299 -13 1604 87 57 0 chr1 105226312 105226542 -176967122 - MER75B DNA T2_type 0 243 1 264 30 0 0 chr1 105226973 105227006 -176966658 + (TG)n Simple_repeat Simple_repeat 2 34 0 477 0 0 0 chr1 105228071 105228124 -176965540 + (TG)n Simple_repeat Simple_repeat 2 54 0 234 238 0 16 chr1 105228201 105228264 -176965400 + L3b LINE CR1 1297 1358 -225 457 310 113 26 chr1 105229776 105230005 -176963659 - MIR SINE MIR 0 262 14 392 294 98 26 chr1 105230834 105231028 -176962636 - L2 LINE L2 -467 2847 2640 303 306 151 5 chr1 105231036 105231235 -176962429 - L3 LINE CR1 -516 1061 834 2197 119 0 7 chr1 105231309 105231619 -176962045 - AluSc SINE Alu -1 308 1 209 317 29 39 chr1 105231653 105231757 -176961907 - MIR3 SINE MIR -100 108 6 2287 94 0 7 chr1 105232918 105233215 -176960449 + AluSc SINE Alu 1 295 -14 334 288 116 25 chr1 105234285 105234483 -176959181 + L1MC4a LINE L1 5679 5894 -1914 426 217 126 59 chr1 105234956 105235563 -176958101 - L1MC5 LINE L1 -46 7915 7205 1790 193 84 25 chr1 105235563 105236004 -176957660 + MLT1C LTR MaLR 1 467 0 426 217 126 59 chr1 105236004 105236072 -176957592 - L1MC5 LINE L1 -756 7205 7143 1075 115 0 11 chr1 105236094 105236276 -176957388 + (TCC)n Simple_repeat Simple_repeat 1 180 0 988 140 18 37 chr1 105236276 105236440 -176957224 - AluJo SINE Alu -151 161 1 1616 221 54 72 chr1 105236445 105237188 -176956476 - L1MC5 LINE L1 -803 7005 6414 727 271 110 24 chr1 105238002 105238330 -176955334 - L2 LINE L2 0 3313 2958 1037 185 78 0 chr1 105239886 105240091 -176953573 - MER58 DNA MER1_type -117 224 4 427 279 167 0 chr1 105240183 105240398 -176953266 - MIR SINE MIR -1 261 11 692 263 83 24 chr1 105241450 105241916 -176951748 + L1ME3A LINE L1 5067 5651 -511 751 211 74 17 chr1 105241922 105242097 -176951567 - MER20 DNA MER1_type -1 218 34 331 335 139 0 chr1 105242229 105242423 -176951241 + L1ME3A LINE L1 5731 5951 -219 1400 248 163 38 chr1 105242457 105242986 -176950678 + MLT1G1 LTR MaLR 1 595 0 520 267 77 36 chr1 105244004 105244225 -176949439 - MER102b DNA MER1_type -9 332 103 2234 243 46 36 chr1 105244418 105244627 -176949037 + MLT1G1 LTR MaLR 2 207 -388 2868 13 0 0 chr1 105244627 105244935 -176948729 + AluY SINE Alu 1 308 -3 2234 243 46 36 chr1 105244935 105245313 -176948351 + MLT1G1 LTR MaLR 207 595 0 203 275 100 12 chr1 105245668 105245748 -176947916 - MER5B DNA MER1_type -91 87 1 5312 205 16 11 chr1 105246020 105247406 -176946258 - L1 LINE L1 -2991 3155 1769 183 80 0 0 chr1 105247676 105247701 -176945963 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1159 188 129 33 chr1 105247719 105247991 -176945673 - AluJo SINE Alu -4 298 1 210 162 0 0 chr1 105249328 105249365 -176944299 + T-rich Low_complexity Low_complexity 1 37 0 44153 30 21 1 chr1 105249368 105255397 -176938267 - L1PA2 LINE L1 0 6155 2 23 0 0 0 chr1 105257059 105257082 -176936582 + AT_rich Low_complexity Low_complexity 1 23 0 406 307 12 19 chr1 105257230 105257394 -176936270 - HERVR LTR ERV1 -3175 4564 4068 899 321 55 33 chr1 105258392 105258850 -176934814 - HERVR LTR ERV1 -4061 586 119 2104 120 0 7 chr1 105259007 105259318 -176934346 + AluSx SINE Alu 1 309 0 21 0 0 0 chr1 105259430 105259451 -176934213 + AT_rich Low_complexity Low_complexity 1 21 0 1480 189 0 84 chr1 105260393 105260553 -176933111 + AluJo SINE Alu 1 120 -192 2212 96 3 53 chr1 105260553 105260876 -176932788 + AluSg SINE Alu 1 307 -3 921 207 0 0 chr1 105260879 105261048 -176932616 + AluJo/FRAM SINE Alu 137 305 -7 251 235 70 61 chr1 105262442 105262557 -176931107 - MER4D LTR ERV1 -45 827 712 708 227 0 0 chr1 105262745 105262873 -176930791 + FLAM_C SINE Alu 2 129 -14 2865 164 2 2 chr1 105263044 105263489 -176930175 - MER44D DNA MER2_type -105 500 1 1021 165 5 48 chr1 105263493 105263699 -176929965 - L1ME LINE L1 -390 5776 5580 268 303 30 0 chr1 105263705 105263804 -176929860 + L1ME LINE L1 5617 5718 -403 727 308 33 45 chr1 105264344 105264860 -176928804 + HAL1 LINE L1 763 1272 -1235 860 189 97 31 chr1 105264862 105265089 -176928575 - LTR48 LTR ERV1 -2 785 544 1843 185 114 17 chr1 105265117 105265528 -176928136 - LTR48 LTR ERV1 -336 451 1 1530 183 46 0 chr1 105265551 105265835 -176927829 + AluJb SINE Alu 1 297 -15 2163 160 97 68 chr1 105265887 105266475 -176927189 - LTR48 LTR ERV1 0 787 183 1312 186 29 58 chr1 105266476 105266788 -176926876 + AluJb SINE Alu 10 312 0 653 164 276 26 chr1 105266789 105266941 -176926723 - LTR48B LTR ERV1 -528 116 1 385 211 44 9 chr1 105266949 105267063 -176926601 + HAL1 LINE L1 1350 1467 -1040 614 250 49 11 chr1 105267066 105267250 -176926414 + HAL1 LINE L1 1556 1746 -761 255 243 14 0 chr1 105267567 105267641 -176926023 + HAL1 LINE L1 2078 2152 -355 317 280 24 64 chr1 105267715 105267840 -176925824 + HAL1b LINE L1 792 911 -437 360 255 146 94 chr1 105267926 105268193 -176925471 + HAL1 LINE L1 2198 2478 -29 2210 116 0 0 chr1 105268202 105268512 -176925152 + AluSx SINE Alu 2 311 -1 2068 85 41 14 chr1 105268634 105268928 -176924736 + AluSx SINE Alu 1 302 -10 400 203 27 0 chr1 105269574 105269648 -176924016 - MIR3 SINE MIR -46 162 87 201 294 188 12 chr1 105270112 105270197 -176923467 - MIR SINE MIR -105 157 58 744 256 45 15 chr1 105270512 105270711 -176922953 - MER63A DNA MER1_type -5 205 1 369 167 122 33 chr1 105271486 105271576 -176922088 + MER5A DNA MER1_type 9 106 -83 2011 217 69 55 chr1 105272191 105272860 -176920804 - L1MC4 LINE L1 0 8042 7365 297 57 0 0 chr1 105272921 105272956 -176920708 + U2 snRNA snRNA 1 35 -153 422 223 64 11 chr1 105273002 105273096 -176920568 + MIR SINE MIR 36 134 -128 287 305 183 0 chr1 105273710 105273841 -176919823 - L2 LINE L2 -1 3271 3117 395 280 9 28 chr1 105274801 105274908 -176918756 + L2 LINE L2 3149 3253 -19 2289 97 3 0 chr1 105275107 105275415 -176918249 + AluSg SINE Alu 1 309 -1 606 297 43 30 chr1 105276086 105276318 -176917346 - MIR SINE MIR -15 247 13 262 305 68 45 chr1 105276782 105276959 -176916705 + L2 LINE L2 3122 3302 -11 619 250 42 56 chr1 105277201 105277417 -176916247 + MIR SINE MIR 31 243 -19 362 229 42 10 chr1 105277567 105277663 -176916001 + MIR SINE MIR 162 260 -2 2063 116 3 0 chr1 105277786 105278079 -176915585 - AluSc SINE Alu -15 294 1 24 0 0 0 chr1 105278258 105278282 -176915382 + AT_rich Low_complexity Low_complexity 1 24 0 203 53 0 53 chr1 105278440 105278478 -176915186 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2112 110 3 0 chr1 105278478 105278768 -176914896 - L1PA15 LINE L1 -5 6160 5870 2907 247 35 27 chr1 105278920 105279696 -176913968 - MER21B LTR ERV1 -57 806 25 494 167 13 0 chr1 105279738 105279816 -176913848 - MER21B LTR ERV1 -773 90 12 468 198 38 173 chr1 105280391 105280628 -176913036 - MIR SINE MIR 0 262 58 1058 95 42 12 chr1 105280891 105281059 -176912605 - AluSg/x SINE Alu -6 306 134 1985 119 7 3 chr1 105281059 105281354 -176912310 - AluSq SINE Alu -17 296 1 386 263 146 14 chr1 105281629 105282015 -176911649 + MLT1L LTR MaLR 153 608 -7 2191 98 3 0 chr1 105282407 105282713 -176910951 - AluSc SINE Alu -2 307 1 226 194 355 54 chr1 105282763 105282856 -176910808 + L2 LINE L2 3191 3311 -2 223 310 0 0 chr1 105284756 105284814 -176908850 + GA-rich Low_complexity Low_complexity 2 59 0 228 182 0 0 chr1 105285509 105285553 -176908111 + (TG)n Simple_repeat Simple_repeat 2 45 0 265 316 60 26 chr1 105285723 105285840 -176907824 + L2 LINE L2 3151 3271 -1 442 316 89 12 chr1 105286224 105286392 -176907272 - MIR3 SINE MIR -7 201 21 279 263 0 0 chr1 105286409 105286489 -176907175 + GA-rich Low_complexity Low_complexity 2 81 0 1104 92 86 6 chr1 105286526 105286700 -176906964 + MER39 LTR ERV1 1 188 -519 618 195 0 9 chr1 105286700 105286813 -176906851 + FRAM SINE Alu 1 112 -64 1155 146 0 34 chr1 105286814 105287020 -176906644 + AluJo SINE Alu 84 282 -30 2343 139 76 13 chr1 105287022 105287418 -176906246 + MER39 LTR ERV1 172 592 -115 1646 117 12 0 chr1 105287418 105287658 -176906006 - AluJb SINE Alu -20 292 50 1567 244 62 79 chr1 105287659 105288308 -176905356 - LTR9B LTR ERV1 0 644 7 392 96 0 0 chr1 105288314 105288366 -176905298 - AluJb SINE Alu -250 52 1 812 123 0 8 chr1 105288366 105288488 -176905176 + MER39 LTR ERV1 587 707 0 2710 115 18 5 chr1 105288513 105288896 -176904768 + MSTA LTR MaLR 1 388 -40 726 183 15 0 chr1 105288896 105289027 -176904637 + FLAM_C SINE Alu 1 133 0 2209 119 112 17 chr1 105289052 105289463 -176904201 + LTR7 LTR ERV1 1 450 0 12841 144 17 35 chr1 105289463 105291739 -176901925 + HERVH LTR ERV1 1 2542 -5171 5905 145 24 32 chr1 105291739 105292819 -176900845 - MER11C LTR ERVK 0 1071 1 12841 144 17 35 chr1 105292819 105293103 -176900561 + HERVH LTR ERV1 2542 2830 -4883 8354 126 5 5 chr1 105293103 105294957 -176898707 + HERVH LTR ERV1 3357 5250 -1841 2751 93 48 12 chr1 105294975 105295396 -176898268 + HERVH LTR ERV1 7278 7713 0 2285 101 125 22 chr1 105295396 105295804 -176897860 + LTR7 LTR ERV1 1 450 0 995 120 7 0 chr1 105295810 105295960 -176897704 + AluSg/x SINE Alu 158 308 -2 382 107 0 0 chr1 105295963 105296019 -176897645 + MSTA LTR MaLR 373 428 0 2716 157 16 7 chr1 105296831 105297283 -176896381 - MSTB2 LTR MaLR -1 456 1 1974 97 56 0 chr1 105297737 105298025 -176895639 + AluSq SINE Alu 2 305 -8 548 224 184 13 chr1 105298563 105298715 -176894949 - MER5A DNA MER1_type 0 189 12 695 194 0 16 chr1 105298738 105298862 -176894802 - MER5B DNA MER1_type -6 172 51 441 259 26 17 chr1 105299013 105299129 -176894535 + MIR SINE MIR 110 226 -36 257 307 47 73 chr1 105299408 105299558 -176894106 - L2 LINE L2 -7 3306 3161 317 277 48 129 chr1 105299582 105299853 -176893811 - L2 LINE L2 0 3272 3024 286 289 141 8 chr1 105299977 105300098 -176893566 + L2 LINE L2 3136 3272 0 1934 119 0 20 chr1 105300864 105301157 -176892507 - AluSx SINE Alu -15 297 11 414 263 273 10 chr1 105302092 105302290 -176891374 - MIR SINE MIR -1 261 12 1984 124 34 0 chr1 105302752 105303043 -176890621 + AluSg SINE Alu 1 301 -9 1141 139 0 0 chr1 105303422 105303588 -176890076 - FRAM SINE Alu 0 166 1 360 0 0 0 chr1 105304178 105304218 -176889446 + (TA)n Simple_repeat Simple_repeat 1 40 0 1774 215 39 14 chr1 105304305 105304719 -176888945 + LTR40c LTR ERVL 29 452 -13 317 279 64 70 chr1 105304721 105304893 -176888771 + MIR SINE MIR 51 221 -41 22 0 0 0 chr1 105305450 105305472 -176888192 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 105305727 105305748 -176887916 + GC_rich Low_complexity Low_complexity 1 21 0 419 94 0 141 chr1 105306288 105306373 -176887291 + tRNA-Arg-AGA tRNA tRNA 1 73 -3 243 0 0 0 chr1 105306612 105306639 -176887025 + (CGG)n Simple_repeat Simple_repeat 3 29 0 369 298 38 15 chr1 105306815 105306946 -176886718 - MER5A DNA MER1_type -4 185 52 1063 247 43 55 chr1 105307400 105307798 -176885866 - L1MC/D LINE L1 -1996 5812 5420 1616 183 0 3 chr1 105307798 105308082 -176885582 - AluJo SINE Alu -27 285 3 1063 247 43 55 chr1 105308082 105308189 -176885475 - L1MC/D LINE L1 -2388 5420 5313 317 266 83 65 chr1 105308191 105308360 -176885304 - L1MC/D LINE L1 -878 5268 5097 2136 109 0 3 chr1 105308539 105308833 -176884831 - AluSx SINE Alu -19 293 1 7807 52 47 0 chr1 105308988 105309950 -176883714 - LTR13 LTR ERVK 0 1007 1 975 226 55 0 chr1 105310024 105310241 -176883423 - MIR SINE MIR 0 262 34 1830 139 0 0 chr1 105310363 105310636 -176883028 + AluSx SINE Alu 1 273 -39 550 120 0 20 chr1 105310639 105310739 -176882925 + (GGGA)n Simple_repeat Simple_repeat 3 100 0 22 80 0 0 chr1 105310969 105311019 -176882645 + AT_rich Low_complexity Low_complexity 1 50 0 4112 124 35 40 chr1 105311029 105311317 -176882347 + L1MB7 LINE L1 5426 5714 -470 1832 125 0 37 chr1 105311317 105311612 -176882052 - AluJb SINE Alu -28 284 1 4112 124 35 40 chr1 105311612 105312067 -176881597 + L1MB7 LINE L1 5714 6165 -19 356 198 42 146 chr1 105312135 105312511 -176881153 - L1MC/D LINE L1 -1950 4196 3770 415 239 60 40 chr1 105312579 105312804 -176880860 + L1MC4a LINE L1 5701 5931 -231 21 36 0 0 chr1 105313016 105313044 -176880620 + AT_rich Low_complexity Low_complexity 1 28 0 2323 91 3 3 chr1 105313054 105313351 -176880313 + AluSp SINE Alu 1 297 -16 864 308 84 38 chr1 105313608 105314141 -176879523 - L2 LINE L2 -478 2836 2279 304 170 0 0 chr1 105314137 105314190 -176879474 + L2 LINE L2 3220 3272 0 * 378 246 76 8 chr1 105314241 105314359 -176879305 - L2 LINE L2 -1036 2278 2153 594 151 0 0 chr1 105314361 105314447 -176879217 + AluSp SINE Alu 1 86 -226 41394 44 4 2 chr1 105314448 105320588 -176873076 + L1PA4 LINE L1 2 6155 0 1956 51 13 0 chr1 105320606 105320841 -176872823 + AluSp SINE Alu 74 311 -2 355 265 140 7 chr1 105321029 105321165 -176872499 - MIR SINE MIR -3 259 106 923 210 113 100 chr1 105321656 105322117 -176871547 - MLT1J LTR MaLR -3 508 42 459 129 207 35 chr1 105322207 105322323 -176871341 + MIR SINE MIR 71 206 -56 237 227 91 0 chr1 105322373 105322439 -176871225 + MIR SINE MIR 186 257 -5 305 287 102 9 chr1 105322528 105322636 -176871028 + L2 LINE L2 3151 3268 -4 184 259 56 19 chr1 105322731 105322785 -176870879 + L2 LINE L2 3214 3269 -3 467 219 192 44 chr1 105322816 105323228 -176870436 - LTR33A LTR ERVL 0 523 1 188 304 175 42 chr1 105323504 105323955 -176869709 - L2 LINE L2 -944 2370 1860 312 215 43 65 chr1 105324505 105324598 -176869066 - MER5B DNA MER1_type -79 99 9 2335 83 10 3 chr1 105325577 105325878 -176867786 + AluSx SINE Alu 1 303 -9 1785 126 100 0 chr1 105326041 105326312 -176867352 + AluSx SINE Alu 1 298 -14 6623 51 31 11 chr1 105326643 105327716 -176865948 + L1PA7 LINE L1 5062 6153 -1 189 74 0 0 chr1 105328140 105328167 -176865497 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 316 0 53 chr1 105328732 105328808 -176864856 - L2 LINE L2 -60 3212 3141 1006 143 298 16 chr1 105329034 105329356 -176864308 + Charlie1b DNA MER1_type 1 413 -110 288 277 126 34 chr1 105329916 105330035 -176863629 - L2 LINE L2 -1 3271 3142 295 130 0 0 chr1 105331448 105331494 -176862170 - L2 LINE L2 -1 3312 3267 27 0 0 0 chr1 105331588 105331615 -176862049 + AT_rich Low_complexity Low_complexity 1 27 0 1699 144 3 88 chr1 105332024 105332365 -176861299 + AluJo SINE Alu 1 312 0 747 190 0 15 chr1 105332365 105332502 -176861162 + AluJb SINE Alu 1 135 -177 936 166 150 16 chr1 105332892 105333085 -176860579 + MER20 DNA MER1_type 1 219 0 837 154 0 0 chr1 105333392 105333509 -176860155 - FLAM_C SINE Alu -26 117 1 808 143 71 13 chr1 105334682 105334836 -176858828 - FRAM SINE Alu -14 162 1 183 204 0 0 chr1 105335058 105335102 -176858562 + CT-rich Low_complexity Low_complexity 1 44 0 2117 117 3 0 chr1 105336740 105337040 -176856624 + AluSg SINE Alu 1 301 -9 231 36 0 0 chr1 105338503 105338531 -176855133 + (TTG)n Simple_repeat Simple_repeat 3 30 0 466 256 88 115 chr1 105338757 105338907 -176854757 + MLT1J LTR MaLR 78 231 -280 2127 76 0 18 chr1 105338907 105339183 -176854481 - AluSx SINE Alu -19 293 23 466 256 88 115 chr1 105339183 105339474 -176854190 + MLT1J LTR MaLR 231 507 -4 334 239 0 0 chr1 105339874 105339945 -176853719 - MIR SINE MIR -16 246 176 2094 138 102 10 chr1 105340336 105340728 -176852936 + Tigger2a DNA MER2_type 1 428 -6 873 187 107 113 chr1 105340943 105341320 -176852344 + MLT1F1 LTR MaLR 13 404 -163 985 172 30 35 chr1 105341384 105341433 -176852231 - L1ME2 LINE L1 -208 5956 5908 2256 127 0 0 chr1 105341433 105341740 -176851924 + AluJb SINE Alu 1 307 -5 985 172 30 35 chr1 105341740 105341922 -176851742 - L1ME2 LINE L1 -256 5908 5726 955 206 6 6 chr1 105341992 105342167 -176851497 + FAM SINE Alu 1 175 0 2050 153 10 3 chr1 105342268 105342575 -176851089 + AluJb SINE Alu 1 309 -3 2427 82 0 0 chr1 105343136 105343430 -176850234 - AluSc SINE Alu -15 294 1 2248 114 0 0 chr1 105343430 105343728 -176849936 - AluSx SINE Alu -14 298 1 400 279 115 8 chr1 105343774 105343896 -176849768 + L2 LINE L2 3138 3272 0 23 0 0 0 chr1 105343922 105343945 -176849719 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr1 105344077 105344110 -176849554 + AT_rich Low_complexity Low_complexity 1 33 0 2223 88 17 0 chr1 105345707 105346004 -176847660 - AluSx SINE Alu -8 304 3 2460 65 3 0 chr1 105346189 105346481 -176847183 - AluSg SINE Alu -15 295 3 462 275 36 29 chr1 105348035 105348173 -176845491 + MER5B DNA MER1_type 24 162 -16 274 233 108 23 chr1 105348174 105348303 -176845361 - L1ME4a LINE L1 -47 6074 5935 423 254 75 40 chr1 105348383 105348611 -176845053 - L1ME4a LINE L1 -195 5926 5691 25 0 0 0 chr1 105348611 105348636 -176845028 + AT_rich Low_complexity Low_complexity 1 25 0 2253 104 7 0 chr1 105348636 105348925 -176844739 - AluSx SINE Alu -21 291 1 347 207 50 71 chr1 105349427 105349567 -176844097 - L1ME4a LINE L1 -467 5654 5518 1938 140 6 37 chr1 105349580 105349901 -176843763 - AluJo SINE Alu 0 312 2 1230 294 81 21 chr1 105349922 105350392 -176843272 + L2 LINE L2 2816 3313 0 181 167 0 0 chr1 105350524 105350554 -176843110 + MIR SINE MIR 230 259 -3 775 199 61 5 chr1 105350557 105350741 -176842923 - MIR SINE MIR -31 231 42 262 312 159 0 chr1 105351897 105352054 -176841610 + MIR SINE MIR 47 228 -34 1885 167 0 3 chr1 105352693 105352987 -176840677 + AluJb SINE Alu 3 295 -17 2380 92 0 3 chr1 105353728 105354031 -176839633 - AluSx SINE Alu -10 302 1 2480 91 0 0 chr1 105354669 105354976 -176838688 - AluSg SINE Alu -3 307 1 234 0 0 0 chr1 105357019 105357045 -176836619 + (A)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr1 105357163 105357184 -176836480 + AT_rich Low_complexity Low_complexity 1 21 0 808 161 0 0 chr1 105357229 105357347 -176836317 - FLAM_C SINE Alu -17 126 9 1496 164 97 4 chr1 105357349 105357617 -176836047 - AluJo SINE Alu -19 293 1 2016 94 58 0 chr1 105357811 105358088 -176835576 - AluSx SINE Alu -19 293 1 444 275 113 88 chr1 105358104 105358537 -176835127 - L1ME LINE L1 -302 5819 5376 629 244 141 33 chr1 105359197 105359410 -176834254 + MIR SINE MIR 26 261 -1 200 200 25 0 chr1 105359475 105359515 -176834149 + (CAA)n Simple_repeat Simple_repeat 1 41 0 527 282 133 30 chr1 105359518 105359752 -176833912 - MIR SINE MIR -2 260 3 191 330 126 0 chr1 105359753 105359856 -176833808 + L2 LINE L2 3154 3269 -3 21 36 0 0 chr1 105360398 105360426 -176833238 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chr1 105360566 105360592 -176833072 + (TG)n Simple_repeat Simple_repeat 2 27 0 2359 53 0 4 chr1 105360879 105361193 -176832471 - AluY SINE Alu 0 313 1 3825 146 11 63 chr1 105361203 105361986 -176831678 - L1MC1 LINE L1 0 6333 5591 22 35 0 0 chr1 105361994 105362023 -176831641 + AT_rich Low_complexity Low_complexity 1 29 0 2178 116 0 23 chr1 105362023 105362333 -176831331 - AluSx SINE Alu -9 303 1 1993 149 10 7 chr1 105363607 105363908 -176829756 + AluSx SINE Alu 1 302 -10 215 254 102 0 chr1 105363948 105364007 -176829657 - MIR SINE MIR -195 67 3 333 343 46 46 chr1 105364041 105364216 -176829448 + MER5A DNA MER1_type 13 187 -2 425 254 98 17 chr1 105364383 105364619 -176829045 + MER112 DNA MER1_type 2 256 0 407 307 120 13 chr1 105365708 105365933 -176827731 - L3 LINE CR1 -17 1560 1312 322 260 71 26 chr1 105366110 105366264 -176827400 - MER112 DNA MER1_type -98 162 2 329 176 95 0 chr1 105366770 105366844 -176826820 - MIR SINE MIR -49 213 133 500 99 0 0 chr1 105367061 105367142 -176826522 - L1MA4A LINE L1 -4 6299 6219 282 67 0 22 chr1 105367197 105367242 -176826422 - L1MA4A LINE L1 -65 6238 6195 22 70 0 0 chr1 105367693 105367736 -176825928 + GC_rich Low_complexity Low_complexity 1 43 0 342 297 120 75 chr1 105367786 105368353 -176825311 - L1M2 LINE L1 -5520 1329 535 15044 78 12 11 chr1 105369452 105375496 -176818168 - L1PA6 LINE L1 -3 6151 9 189 380 41 25 chr1 105375661 105375782 -176817882 + MIR SINE MIR 5 127 -135 283 136 11 148 chr1 105375800 105375835 -176817829 + MER116 DNA Mariner 2 20 -60 2477 63 0 7 chr1 105375835 105376137 -176817527 - AluY SINE Alu -9 302 3 283 136 11 148 chr1 105376137 105376189 -176817475 + MER116 DNA Mariner 20 77 -3 223 220 55 44 chr1 105376190 105376281 -176817383 + MIR SINE MIR 151 242 -20 231 316 58 23 chr1 105376377 105376524 -176817140 - MIR SINE MIR -46 216 5 1760 191 3 3 chr1 105376942 105377246 -176816418 + AluJo SINE Alu 1 304 -8 2385 106 0 6 chr1 105377649 105377960 -176815704 - AluSx SINE Alu -3 309 1 434 286 48 0 chr1 105378334 105378460 -176815204 - L2 LINE L2 0 3313 3182 2307 114 0 0 chr1 105379126 105379425 -176814239 - AluSx SINE Alu -13 299 1 252 0 0 0 chr1 105379515 105379543 -176814121 + (T)n Simple_repeat Simple_repeat 1 28 0 750 153 8 0 chr1 105379556 105379674 -176813990 + FLAM_C SINE Alu 3 121 -22 195 42 0 0 chr1 105380106 105380130 -176813534 + (CTG)n Simple_repeat Simple_repeat 1 24 0 2042 121 11 0 chr1 105380988 105381300 -176812364 - AluSx SINE Alu 0 315 1 1727 161 36 10 chr1 105382271 105382575 -176811089 + AluJb SINE Alu 1 312 0 638 231 0 8 chr1 105382711 105382845 -176810819 + FLAM_A SINE Alu 1 133 0 1355 168 0 0 chr1 105383623 105383832 -176809832 + AluJb SINE Alu 87 295 -17 1821 143 10 23 chr1 105384924 105385224 -176808440 + AluJb SINE Alu 1 296 -16 1890 70 147 4 chr1 105385836 105386095 -176807569 + AluSq SINE Alu 1 296 -17 2078 140 32 9 chr1 105387021 105387364 -176806300 + MSTA LTR MaLR 1 351 -77 14767 183 13 12 chr1 105387364 105391721 -176801943 + L1PB1 LINE L1 1436 5791 -360 378 0 0 0 chr1 105391721 105391763 -176801901 + (TA)n Simple_repeat Simple_repeat 2 43 0 14767 183 13 12 chr1 105391763 105392086 -176801578 + L1PB1 LINE L1 5791 6097 -54 2338 105 0 10 chr1 105392086 105392400 -176801264 + AluSx SINE Alu 2 312 0 14767 183 13 12 chr1 105392400 105392456 -176801208 + L1PB1 LINE L1 6097 6151 0 799 154 0 29 chr1 105393009 105393145 -176800519 - FLAM_C SINE Alu -1 132 1 5598 96 20 1 chr1 105393956 105394797 -176798867 + Tigger1 DNA MER2_type 910 1766 -652 1977 142 18 0 chr1 105394791 105395122 -176798542 + Tigger1 DNA MER2_type 2082 2418 0 * 426 307 137 11 chr1 105396560 105396979 -176796685 - L1MC4a LINE L1 -369 5801 5434 7149 50 0 0 chr1 105397843 105399428 -176794236 - L1PA5 LINE L1 -5 6149 4560 4214 50 2 0 chr1 105399428 105399972 -176793692 + L1PA5 LINE L1 4022 4566 -1580 297 255 121 6 chr1 105400010 105400167 -176793497 + LTR67 LTR ERVL 381 555 -2 708 239 63 63 chr1 105400518 105400612 -176793052 + MIR SINE MIR 6 99 -163 2020 161 0 0 chr1 105400612 105400916 -176792748 - AluSx SINE Alu -8 304 1 708 239 63 63 chr1 105400916 105401060 -176792604 + MIR SINE MIR 98 244 -18 2564 64 0 0 chr1 105401571 105401882 -176791782 + AluY SINE Alu 1 311 0 243 329 27 34 chr1 105401895 105402041 -176791623 + MIR3 SINE MIR 19 163 -45 1857 169 0 25 chr1 105402179 105402498 -176791166 + AluJo SINE Alu 1 311 -1 1853 154 14 0 chr1 105402713 105402999 -176790665 + AluSx SINE Alu 1 290 -22 357 272 24 16 chr1 105402999 105403124 -176790540 - L1MB8 LINE L1 -148 6030 5905 5345 147 3 12 chr1 105403187 105403885 -176789779 - L1MA6 LINE L1 -3 6297 5609 1967 120 27 17 chr1 105403885 105404184 -176789480 - AluJb SINE Alu -10 302 1 5345 147 3 12 chr1 105404184 105404454 -176789210 - L1MA6 LINE L1 -691 5609 5338 1911 85 88 4 chr1 105404454 105404737 -176788927 + AluSg SINE Alu 1 305 0 7447 138 65 45 chr1 105405241 105405544 -176788120 - L1MA4A LINE L1 -17 6988 6692 2148 117 3 20 chr1 105405544 105405844 -176787820 - AluSg SINE Alu -15 295 1 7447 138 65 45 chr1 105405844 105407762 -176785902 - L1MA4A LINE L1 -313 6692 4812 1867 136 65 44 chr1 105407762 105408129 -176785535 - THE1C LTR MaLR 0 375 1 9534 129 17 37 chr1 105408129 105409739 -176783925 - THE1C-int LTR MaLR 0 1580 3 1913 136 57 35 chr1 105409741 105410108 -176783556 - THE1C LTR MaLR 0 375 1 7447 138 65 45 chr1 105410108 105410396 -176783268 - L1MA4A LINE L1 -2193 4812 4407 7059 94 6 20 chr1 105410412 105411485 -176782179 - MER11C LTR ERVK -13 1058 1 6039 179 22 14 chr1 105411486 105412143 -176781521 - L1MA4A LINE L1 -2437 4411 3761 2349 117 0 0 chr1 105412143 105412450 -176781214 + AluSx SINE Alu 1 307 -5 6039 179 22 14 chr1 105412450 105413181 -176780483 - L1MA4A LINE L1 -3087 3761 3012 834 138 39 0 chr1 105413219 105413349 -176780315 - AluJo SINE Alu -177 135 1 11129 158 32 40 chr1 105413349 105413695 -176779969 - L1MA4A LINE L1 -3855 2993 2646 2354 78 0 39 chr1 105413695 105414002 -176779662 - AluY SINE Alu -16 295 1 11129 158 32 40 chr1 105414002 105415839 -176777825 - L1MA4A LINE L1 -4202 2646 827 417 133 36 12 chr1 105416141 105416224 -176777440 + L1M2 LINE L1 1629 1713 -5136 22 0 0 0 chr1 105417927 105417949 -176775715 + AT_rich Low_complexity Low_complexity 1 22 0 1477 169 0 0 chr1 105418557 105418793 -176774871 + MER46A DNA MER2_type 1 236 0 371 336 0 8 chr1 105418937 105419059 -176774605 + MIR SINE MIR 30 150 -58 803 206 6 6 chr1 105419444 105419604 -176774060 - FRAM SINE Alu -16 160 1 215 307 39 39 chr1 105420265 105420443 -176773221 + L2 LINE L2 2914 3090 -182 570 281 103 0 chr1 105420472 105420675 -176772989 - MIR SINE MIR -21 241 18 183 292 42 0 chr1 105420730 105420802 -176772862 + L2 LINE L2 3198 3272 0 190 260 20 0 chr1 105421711 105421761 -176771903 + L2 LINE L2 2927 2977 -337 467 259 7 14 chr1 105421844 105421987 -176771677 + MIR SINE MIR 91 232 -30 21 0 0 0 chr1 105422501 105422522 -176771142 + AT_rich Low_complexity Low_complexity 1 21 0 714 304 13 21 chr1 105422948 105423185 -176770479 - MIR SINE MIR -10 252 18 297 220 0 0 chr1 105426658 105426717 -176766947 - L2 LINE L2 0 3313 3255 2341 209 65 104 chr1 105426758 105427527 -176766137 - MER21B LTR ERV1 -124 739 1 317 257 17 91 chr1 105427529 105427704 -176765960 - L2 LINE L2 -90 3223 3062 5145 124 68 7 chr1 105427781 105428611 -176765053 + Tigger3(Golem) DNA MER2_type 2149 3028 -1 1911 178 26 32 chr1 105428912 105429260 -176764404 - MLT1A1 LTR MaLR -10 355 10 243 206 14 110 chr1 105429506 105429579 -176764085 - MIR3 SINE MIR -21 187 122 2297 109 0 0 chr1 105430151 105430445 -176763219 - AluSx SINE Alu -18 294 1 5472 154 30 20 chr1 105430445 105431392 -176762272 - L1M4c LINE L1 -5415 969 14 252 0 0 0 chr1 105431751 105431779 -176761885 + (TTAAA)n Simple_repeat Simple_repeat 2 29 0 968 194 0 0 chr1 105431816 105431981 -176761683 + FRAM SINE Alu 1 165 -1 503 264 31 0 chr1 105432002 105432131 -176761533 + MIR SINE MIR 48 180 -82 2411 149 23 41 chr1 105432455 105432714 -176760950 - MSTA LTR MaLR 0 428 178 2317 88 0 3 chr1 105432714 105433038 -176760626 + AluSx SINE Alu 1 323 0 2411 149 23 41 chr1 105433038 105433213 -176760451 - MSTA LTR MaLR -250 178 1 251 231 192 39 chr1 105433538 105433642 -176760022 + MIR SINE MIR 34 153 -109 2111 119 3 23 chr1 105434109 105434411 -176759253 - AluSx SINE Alu -16 296 1 277 350 17 8 chr1 105436035 105436155 -176757509 + MER5A DNA MER1_type 66 186 -3 199 313 119 37 chr1 105436479 105436613 -176757051 + L2 LINE L2 3107 3251 -21 203 293 131 20 chr1 105438233 105438332 -176755332 + MIR SINE MIR 24 133 -75 282 160 0 0 chr1 105438645 105438695 -176754969 + (TG)n Simple_repeat Simple_repeat 1 50 0 607 304 142 15 chr1 105439408 105439740 -176753924 - MLT1J LTR MaLR -130 381 8 838 207 30 0 chr1 105439805 105439974 -176753690 + MER45A DNA AcHobo 5 178 0 31 44 0 0 chr1 105440264 105440309 -176753355 + AT_rich Low_complexity Low_complexity 1 45 0 667 139 120 0 chr1 105440309 105440417 -176753247 - FLAM_C SINE Alu -21 122 2 5221 116 32 3 chr1 105440804 105441172 -176752492 - L1PA16 LINE L1 -9 6157 5801 333 0 0 0 chr1 105441172 105441209 -176752455 + (TA)n Simple_repeat Simple_repeat 1 37 0 5221 116 32 3 chr1 105441209 105441928 -176751736 - L1PA16 LINE L1 -365 5801 5048 407 284 76 48 chr1 105441937 105442187 -176751477 - L2 LINE L2 -20 3293 3037 556 279 121 25 chr1 105442197 105442477 -176751187 - L1MC4a LINE L1 -239 5882 5576 1988 233 37 29 chr1 105442510 105443021 -176750643 + MER68 LTR ERV1 3 517 -45 696 267 43 26 chr1 105443077 105443425 -176750239 - L1MC4a LINE L1 -667 5497 5125 234 128 0 0 chr1 105443433 105443472 -176750192 + (TG)n Simple_repeat Simple_repeat 1 39 0 715 284 45 5 chr1 105443512 105443734 -176749930 + MIR SINE MIR 4 234 -28 183 212 0 0 chr1 105443705 105443738 -176749926 + L2 LINE L2 3251 3283 -30 * 2518 75 0 0 chr1 105443926 105444233 -176749431 - AluY SINE Alu -4 307 1 316 186 398 0 chr1 105444716 105444829 -176748835 - MIR SINE MIR -92 170 13 1617 214 198 6 chr1 105444906 105445097 -176748567 + L1MC4 LINE L1 6477 6630 -1412 237 65 0 0 chr1 105445097 105445128 -176748536 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1617 214 198 6 chr1 105445128 105445446 -176748218 + L1MC4 LINE L1 6630 7084 -958 * 2166 219 117 13 chr1 105445441 105445998 -176747666 + L1MC4 LINE L1 7289 7903 -139 253 209 44 77 chr1 105446096 105446187 -176747477 - L1MC4a LINE L1 -1145 5001 4914 198 339 18 9 chr1 105446306 105446415 -176747249 - L2 LINE L2 -460 2854 2745 181 175 70 0 chr1 105446526 105446583 -176747081 + CT-rich Low_complexity Low_complexity 6 66 0 204 216 39 0 chr1 105446643 105446694 -176746970 + MIR SINE MIR 193 245 -17 695 207 15 7 chr1 105447748 105447883 -176745781 + MER58B DNA MER1_type 191 326 -15 242 297 54 0 chr1 105447902 105447976 -176745688 + L2 LINE L2 3189 3266 -47 431 211 128 31 chr1 105448397 105448656 -176745008 - MER115 DNA AcHobo -23 670 354 312 242 0 45 chr1 105448678 105448744 -176744920 - MER115 DNA AcHobo -454 239 177 225 0 0 0 chr1 105449723 105449748 -176743916 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1874 91 17 74 chr1 105449749 105450046 -176743618 - AluSx SINE Alu -32 280 1 2142 129 0 3 chr1 105451067 105451369 -176742295 - AluSc SINE Alu -8 301 1 21 36 0 0 chr1 105455694 105455722 -176737942 + AT_rich Low_complexity Low_complexity 1 28 0 2629 146 6 26 chr1 105455724 105456191 -176737473 + L1MB3 LINE L1 5724 6181 -2 295 164 26 110 chr1 105456215 105456268 -176737396 + L1ME2 LINE L1 6072 6128 -56 1520 178 0 43 chr1 105456268 105456549 -176737115 - AluJb SINE Alu -7 305 37 295 164 26 110 chr1 105456549 105456599 -176737065 + L1ME2 LINE L1 6128 6181 -3 1815 139 35 10 chr1 105457234 105457522 -176736142 + AluJo SINE Alu 11 305 -7 514 0 30 0 chr1 105457710 105457776 -176735888 + (TTTTA)n Simple_repeat Simple_repeat 3 70 0 2065 91 0 43 chr1 105457790 105458066 -176735598 - AluSq SINE Alu -49 264 1 2136 140 0 0 chr1 105458068 105458361 -176735303 - AluSx SINE Alu -19 293 1 188 311 27 14 chr1 105459124 105459198 -176734466 + L2 LINE L2 3239 3313 0 271 275 175 0 chr1 105461412 105461572 -176732092 - L2 LINE L2 -7 3306 3119 499 271 108 19 chr1 105461646 105461915 -176731749 + L2 LINE L2 2916 3208 -105 1843 246 59 32 chr1 105462003 105462634 -176731030 - L1MC4 LINE L1 -119 7923 7276 27 0 0 0 chr1 105462640 105462667 -176730997 + AT_rich Low_complexity Low_complexity 1 27 0 1920 129 0 14 chr1 105462667 105462953 -176730711 - AluJo SINE Alu -30 282 1 308 242 45 0 chr1 105462972 105463038 -176730626 - L1MC4a LINE L1 -982 6826 6758 3055 239 55 80 chr1 105463144 105464341 -176729323 - L1MC4a LINE L1 -1059 6749 5583 546 207 0 54 chr1 105464341 105464452 -176729212 + L2 LINE L2 3209 3313 0 1141 182 50 34 chr1 105466949 105467274 -176726390 + MER33 DNA MER1_type 1 324 0 481 261 222 17 chr1 105468176 105468352 -176725312 + MIR SINE MIR 32 243 -19 351 335 81 67 chr1 105471284 105471717 -176721947 + L2 LINE L2 2827 3265 -7 564 168 33 0 chr1 105473289 105473506 -176720158 + GA-rich Low_complexity Low_complexity 1 224 0 270 202 124 67 chr1 105473955 105474044 -176719620 + MIR SINE MIR 110 203 -59 295 218 19 0 chr1 105474282 105474352 -176719312 - MIR SINE MIR -67 141 82 240 240 198 0 chr1 105474986 105475082 -176718582 + MIR3 SINE MIR 94 208 0 3156 256 199 4 chr1 105475679 105476836 -176716828 + L1MC4 LINE L1 6471 7852 -190 742 137 34 112 chr1 105478063 105478268 -176715396 + MER53 DNA DNA 1 189 0 204 274 0 0 chr1 105478886 105478937 -176714727 + GA-rich Low_complexity Low_complexity 4 54 0 395 308 130 0 chr1 105479109 105479255 -176714409 - L1M4 LINE L1 -1771 4375 4211 227 304 0 0 chr1 105479288 105479357 -176714307 + L1ME LINE L1 5817 5885 -236 490 329 29 0 chr1 105479412 105479552 -176714112 + MER91A DNA MER1_type 42 185 -11 226 296 107 82 chr1 105481635 105481794 -176711870 + L2 LINE L2 2621 2783 -531 550 322 176 14 chr1 105484294 105485053 -176708611 + L2 LINE L2 2423 3312 -1 485 298 57 61 chr1 105485416 105485659 -176708005 - MIR SINE MIR -12 250 4 283 192 82 27 chr1 105485857 105485930 -176707734 - MIR3 SINE MIR -11 197 121 693 170 0 0 chr1 105486049 105486214 -176707450 + GA-rich Low_complexity Low_complexity 1 165 0 329 234 21 0 chr1 105487063 105487157 -176706507 + MLT1J LTR MaLR 413 508 -3 372 223 96 0 chr1 105487166 105487260 -176706404 - MIR SINE MIR -59 203 101 244 274 41 0 chr1 105487650 105487723 -176705941 + L1ME LINE L1 5695 5770 -351 2031 136 13 13 chr1 105487738 105488048 -176705616 + AluSx SINE Alu 1 310 -2 328 248 70 57 chr1 105489358 105489515 -176704149 + L3 LINE CR1 1338 1496 -81 193 242 16 81 chr1 105489777 105489839 -176703825 - L2 LINE L2 -6 3266 3209 2098 123 6 25 chr1 105491556 105491874 -176701790 + AluSx SINE Alu 1 312 0 235 297 115 71 chr1 105492207 105492344 -176701320 + MIR SINE MIR 13 161 -101 2096 136 0 13 chr1 105492344 105492654 -176701010 + AluJo SINE Alu 6 311 -1 235 297 115 71 chr1 105492654 105492698 -176700966 + MIR SINE MIR 161 202 -60 1693 164 8 74 chr1 105493320 105493687 -176699977 + LTR3b LTR ERVK 158 500 0 320 328 53 23 chr1 105493890 105494021 -176699643 + MIR SINE MIR 81 215 -47 784 288 33 5 chr1 105494086 105494298 -176699366 - MIR SINE MIR -44 218 1 2187 101 31 0 chr1 105495582 105495870 -176697794 - AluSq SINE Alu -16 297 1 517 262 104 18 chr1 105496866 105497030 -176696634 + MIR SINE MIR 64 241 -21 195 307 40 40 chr1 105499871 105499946 -176693718 - MIR SINE MIR -94 114 40 2310 84 0 28 chr1 105501014 105501334 -176692330 + AluY SINE Alu 1 311 0 746 235 42 103 chr1 105502704 105503180 -176690484 + L1ME4a LINE L1 5619 6065 -56 190 229 0 36 chr1 105503181 105503264 -176690400 + CT-rich Low_complexity Low_complexity 3 82 0 663 187 18 12 chr1 105503409 105503575 -176690089 + CT-rich Low_complexity Low_complexity 3 169 0 376 284 57 0 chr1 105504744 105504885 -176688779 + MIR SINE MIR 114 262 0 2116 105 21 62 chr1 105505591 105505916 -176687748 + AluSx SINE Alu 1 312 0 209 282 40 19 chr1 105506045 105506167 -176687497 + MIR SINE MIR 45 116 -92 712 295 26 13 chr1 105506692 105506924 -176686740 - MIR SINE MIR -10 252 18 2436 86 0 0 chr1 105508774 105509076 -176684588 + AluSg SINE Alu 1 302 -8 222 62 0 0 chr1 105509258 105509290 -176684374 + (CA)n Simple_repeat Simple_repeat 2 33 0 180 260 24 94 chr1 105509773 105509900 -176683764 + MIR3 SINE MIR 86 203 -5 26 64 0 0 chr1 105510069 105510116 -176683548 + AT_rich Low_complexity Low_complexity 1 47 0 198 150 0 0 chr1 105510190 105510230 -176683434 + (A)n Simple_repeat Simple_repeat 1 40 0 776 301 32 4 chr1 105511449 105511695 -176681969 - MIR SINE MIR -1 261 9 370 280 24 24 chr1 105511859 105511984 -176681680 + L2 LINE L2 3147 3271 -1 410 227 0 82 chr1 105512188 105512349 -176681315 + MER21B LTR ERV1 14 201 -404 * 495 245 55 30 chr1 105512318 105512646 -176681018 + MER21B LTR ERV1 98 580 -351 381 238 135 0 chr1 105512687 105512813 -176680851 + MER21B LTR ERV1 614 756 -107 1181 199 48 70 chr1 105512888 105513244 -176680420 + MLT1B LTR MaLR 43 390 0 1104 271 87 49 chr1 105513620 105514404 -176679260 - L2 LINE L2 -15 3298 2497 1274 169 264 0 chr1 105516454 105516749 -176676915 + MER93b LTR ERV1 1 373 0 1854 167 0 0 chr1 105517785 105518091 -176675573 - AluSx SINE Alu -6 306 1 230 241 0 0 chr1 105520214 105520268 -176673396 + L2 LINE L2 3257 3310 -3 22 70 0 0 chr1 105522404 105522447 -176671217 + AT_rich Low_complexity Low_complexity 1 43 0 451 279 52 95 chr1 105523608 105523934 -176669730 - L2 LINE L2 -22 3250 2939 722 210 31 12 chr1 105523962 105524124 -176669540 + MER5B DNA MER1_type 1 165 -13 250 250 17 0 chr1 105524222 105524282 -176669382 + MER81 DNA DNA 34 94 -20 378 248 21 99 chr1 105524459 105524600 -176669064 - MIR SINE MIR -62 146 17 197 340 144 0 chr1 105524697 105524794 -176668870 - MIR SINE MIR -62 146 36 305 300 46 34 chr1 105525983 105526137 -176667527 - MIR3 SINE MIR -28 180 25 1067 186 50 0 chr1 105526227 105526426 -176667238 + MER3 DNA MER1_type 1 209 0 291 269 87 19 chr1 105527047 105527151 -176666513 + MIR SINE MIR 114 224 -38 412 265 10 10 chr1 105527160 105527262 -176666402 - MIR SINE MIR 0 262 161 205 161 0 0 chr1 105527311 105527342 -176666322 - MIR SINE MIR -228 34 4 413 269 108 26 chr1 105530898 105531114 -176662550 + MIR SINE MIR 16 246 -16 736 191 307 0 chr1 105532930 105533119 -176660545 - MIR SINE MIR -3 259 13 301 370 0 0 chr1 105533494 105533586 -176660078 - MER5A DNA MER1_type -34 155 64 3270 102 6 0 chr1 105533588 105534057 -176659607 + L1PA8 LINE L1 4785 5256 -890 5223 85 25 4 chr1 105534059 105534773 -176658891 + L1PA8 LINE L1 5443 6171 -1 273 243 232 51 chr1 105535636 105535912 -176657752 + MLT1K LTR MaLR 210 535 -53 604 289 61 31 chr1 105536347 105536575 -176657089 + MIR SINE MIR 27 261 -1 202 343 111 37 chr1 105536574 105536790 -176656874 - L2 LINE L2 -821 2493 2262 * 225 0 0 0 chr1 105538674 105538699 -176654965 + (CA)n Simple_repeat Simple_repeat 1 25 0 2152 78 0 3 chr1 105540367 105540674 -176652990 + AluY SINE Alu 1 306 0 258 160 0 0 chr1 105541016 105541066 -176652598 + (TG)n Simple_repeat Simple_repeat 2 51 0 183 298 21 0 chr1 105542173 105542220 -176651444 + L2 LINE L2 3169 3216 -56 836 264 78 18 chr1 105544396 105544778 -176648886 + L1MC5 LINE L1 7499 7903 -58 315 289 139 35 chr1 105544953 105545397 -176648267 + L2 LINE L2 2621 3112 -160 246 213 0 0 chr1 105546056 105546103 -176647561 - L1ME4a LINE L1 -101 6020 5974 1975 150 83 6 chr1 105546296 105546635 -176647029 - MLT1A1 LTR MaLR 0 365 1 281 332 68 19 chr1 105546836 105547146 -176646518 + MLT1J LTR MaLR 113 437 -74 456 200 160 0 chr1 105547210 105547310 -176646354 - L2 LINE L2 -7 3306 3191 687 324 131 16 chr1 105547372 105547931 -176645733 + L2 LINE L2 1685 2307 -1007 3126 152 18 29 chr1 105548769 105548879 -176644785 - MER6A DNA MER2_type -261 604 494 1985 124 23 3 chr1 105548879 105549185 -176644479 - AluSx SINE Alu 0 312 1 3126 152 18 29 chr1 105549185 105549635 -176644029 - MER6A DNA MER2_type -371 494 50 296 272 62 148 chr1 105549822 105550160 -176643504 + L2 LINE L2 2964 3272 0 210 259 0 19 chr1 105550552 105550606 -176643058 - L2 LINE L2 -4 3268 3216 414 0 0 0 chr1 105550931 105550977 -176642687 + (CA)n Simple_repeat Simple_repeat 1 46 0 192 377 0 0 chr1 105552828 105552889 -176640775 + L2 LINE L2 3207 3267 -5 225 154 0 0 chr1 105554101 105554140 -176639524 + GA-rich Low_complexity Low_complexity 3 41 0 610 250 0 0 chr1 105555498 105555622 -176638042 + MER5B DNA MER1_type 1 124 -54 180 133 33 0 chr1 105555625 105555655 -176638009 + MER5B DNA MER1_type 23 53 -125 303 319 47 63 chr1 105556935 105557084 -176636580 + MER5A DNA MER1_type 2 149 -40 2274 46 0 33 chr1 105557084 105557406 -176636258 - AluY SINE Alu 0 311 1 303 319 47 63 chr1 105557406 105557447 -176636217 + MER5A DNA MER1_type 149 189 0 362 283 175 11 chr1 105557695 105557872 -176635792 - MIR SINE MIR -50 212 7 1803 198 82 52 chr1 105558384 105558849 -176634815 + MLT1D LTR MaLR 27 505 0 790 181 23 45 chr1 105558984 105559161 -176634503 + MER53 DNA DNA 10 182 -7 892 210 34 15 chr1 105559632 105559837 -176633827 - MIR SINE MIR -6 256 48 227 288 0 0 chr1 105559925 105559984 -176633680 - L2 LINE L2 -236 3036 2978 229 279 15 0 chr1 105560163 105560231 -176633433 - MER3 DNA MER1_type -140 69 1 781 211 63 6 chr1 105561162 105561337 -176632327 - MER5A DNA MER1_type -2 187 3 283 342 155 6 chr1 105561347 105561508 -176632156 + MIR SINE MIR 19 203 -59 436 326 61 32 chr1 105561793 105562072 -176631592 + L2 LINE L2 3015 3301 -12 343 239 28 0 chr1 105562060 105562131 -176631533 + MIR3 SINE MIR 115 187 -21 * 934 194 85 35 chr1 105562798 105562999 -176630665 + MER20 DNA MER1_type 9 219 0 308 203 259 51 chr1 105563282 105563440 -176630224 + MIR SINE MIR 71 261 -1 405 215 0 0 chr1 105564297 105564390 -176629274 + (CA)n Simple_repeat Simple_repeat 2 94 0 209 290 0 43 chr1 105564495 105564564 -176629100 + L2 LINE L2 3205 3270 -2 295 301 115 26 chr1 105566155 105566381 -176627283 + L2 LINE L2 3020 3265 -7 2407 60 28 0 chr1 105568144 105568429 -176625235 - AluY SINE Alu -18 293 1 244 260 14 14 chr1 105569142 105569215 -176624449 + MLT1K LTR MaLR 512 584 -4 446 188 12 0 chr1 105569607 105569687 -176623977 - MER58B DNA MER1_type -38 303 223 208 250 300 0 chr1 105571061 105571161 -176622503 - L2 LINE L2 -7 3265 3136 1591 201 11 0 chr1 105571875 105572158 -176621506 + AluJb SINE Alu 1 286 -26 268 164 0 104 chr1 105572748 105572815 -176620849 - MER5A DNA MER1_type -93 96 37 323 288 64 16 chr1 105572843 105572968 -176620696 - MIR SINE MIR -60 148 18 201 121 0 0 chr1 105573007 105573040 -176620624 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 2525 60 0 3 chr1 105573848 105574146 -176619518 - AluY SINE Alu -14 297 1 394 307 9 9 chr1 105574221 105574335 -176619329 + L2 LINE L2 3198 3311 -2 618 299 35 16 chr1 105574832 105575086 -176618578 + MIR SINE MIR 1 259 -3 497 240 16 16 chr1 105575701 105575830 -176617834 + MER5B DNA MER1_type 50 178 0 878 139 17 17 chr1 105576260 105576440 -176617224 + CT-rich Low_complexity Low_complexity 1 180 0 648 233 8 0 chr1 105577220 105577353 -176616311 - MER94 DNA DNA 0 134 1 319 265 75 20 chr1 105577480 105577627 -176616037 + MIR SINE MIR 98 252 -10 207 246 29 14 chr1 105578408 105578477 -176615187 + L2 LINE L2 3161 3230 -42 750 236 167 10 chr1 105578854 105579142 -176614522 + LTR50 LTR ERVL 404 736 -59 785 182 34 34 chr1 105579741 105579917 -176613747 - MER104 DNA MER2_type -4 176 1 205 71 95 0 chr1 105580237 105580279 -176613385 + (CACCC)n Simple_repeat Simple_repeat 3 48 0 365 306 48 7 chr1 105580994 105581141 -176612523 + MER117 DNA MER1_type 19 171 -26 22 56 0 0 chr1 105581560 105581596 -176612068 + AT_rich Low_complexity Low_complexity 1 36 0 393 233 93 7 chr1 105581601 105581740 -176611924 - MIR SINE MIR -56 206 53 378 0 0 0 chr1 105581885 105581927 -176611737 + (ATG)n Simple_repeat Simple_repeat 3 44 0 311 287 52 65 chr1 105582152 105582535 -176611129 - L2 LINE L2 -724 2590 2213 3933 149 64 30 chr1 105582829 105583121 -176610543 - L1MB3 LINE L1 -19 6164 5884 2196 176 3 6 chr1 105583121 105583485 -176610179 - MLT1A1 LTR MaLR -2 363 1 3933 149 64 30 chr1 105583485 105583502 -176610162 - L1MB3 LINE L1 -299 5884 5869 2218 110 6 19 chr1 105583502 105583819 -176609845 - AluSp SINE Alu 0 313 1 3933 149 64 30 chr1 105583819 105584253 -176609411 - L1MB3 LINE L1 -314 5869 5394 292 309 132 0 chr1 105585466 105585602 -176608062 + MER91A DNA MER1_type 21 174 -22 * 423 262 87 0 chr1 105585598 105585701 -176607963 + MER91A DNA MER1_type 85 196 0 1317 252 100 11 chr1 105587445 105587886 -176605778 + L1ME3A LINE L1 5678 6157 -13 23 0 0 0 chr1 105587895 105587918 -176605746 + AT_rich Low_complexity Low_complexity 1 23 0 450 294 101 16 chr1 105587927 105588175 -176605489 - L2 LINE L2 -1216 2098 1830 284 263 42 0 chr1 105589019 105589114 -176604550 - Charlie2 DNA MER1_type -2719 143 45 2514 56 7 7 chr1 105589201 105589505 -176604159 + AluY SINE Alu 1 304 -7 2353 53 11 7 chr1 105589938 105590254 -176603410 + AluY SINE Alu 1 317 0 266 253 58 11 chr1 105591271 105591358 -176602306 + MIR SINE MIR 11 101 -161 1361 126 0 0 chr1 105591954 105592137 -176601527 + AluSg/x SINE Alu 110 292 -20 227 290 48 0 chr1 105592343 105592405 -176601259 + MER113 DNA MER1_type? 456 520 -1 282 281 96 55 chr1 105592557 105592703 -176600961 - MIR SINE MIR -50 212 61 43712 51 5 2 chr1 105592785 105598917 -176594747 + L1PA4 LINE L1 3 6152 -3 2451 82 52 28 chr1 105598952 105599316 -176594348 + THE1C LTR MaLR 3 375 0 237 284 64 74 chr1 105599316 105599357 -176594307 + MIR SINE MIR 14 54 -208 1117 200 192 0 chr1 105599357 105599607 -176594057 - AluJo SINE Alu -3 299 2 237 284 64 74 chr1 105599607 105599856 -176593808 + MIR SINE MIR 54 262 0 2390 87 0 3 chr1 105599978 105600276 -176593388 + AluSg SINE Alu 2 298 -12 324 356 62 0 chr1 105600460 105600606 -176593058 - MIR SINE MIR -62 200 46 471 260 0 39 chr1 105601958 105602112 -176591552 + MER5A DNA MER1_type 41 188 -1 463 356 0 17 chr1 105602836 105603016 -176590648 + MER5B DNA MER1_type 2 178 0 23 68 0 0 chr1 105603405 105603449 -176590215 + AT_rich Low_complexity Low_complexity 1 44 0 288 244 40 80 chr1 105604297 105604473 -176589191 - L1M4 LINE L1 -1949 4197 4029 502 167 10 0 chr1 105605364 105605460 -176588204 - L1MA7 LINE L1 -22 6269 6173 657 286 91 8 chr1 105605505 105605746 -176587918 + MIR SINE MIR 1 261 -1 568 131 108 246 chr1 105606258 105606518 -176587146 - MER58A DNA MER1_type 0 224 1 23 54 0 0 chr1 105606685 105606722 -176586942 + AT_rich Low_complexity Low_complexity 1 37 0 5480 104 17 5 chr1 105607620 105608390 -176585274 - MER4E LTR ERV1 0 779 1 207 194 30 60 chr1 105608680 105608747 -176584917 + MIR SINE MIR 196 260 -2 186 262 262 10 chr1 105608792 105608895 -176584769 + MIR SINE MIR 20 148 -114 222 136 0 0 chr1 105609180 105609224 -176584440 + (A)n Simple_repeat Simple_repeat 1 44 0 2435 55 3 0 chr1 105609280 105609571 -176584093 + AluY SINE Alu 17 308 -3 32232 69 15 6 chr1 105609741 105611382 -176582282 - L1HS LINE L1 -5 6150 4525 2333 26 22 4 chr1 105611382 105611653 -176582011 - AluY SINE Alu -9 302 27 32232 69 15 6 chr1 105611653 105615113 -176578551 - L1HS LINE L1 -1630 4525 1002 2135 118 0 3 chr1 105616078 105616092 -176577572 - AluSg SINE Alu -14 296 283 270 0 0 0 chr1 105616092 105616122 -176577542 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2135 118 0 3 chr1 105616122 105616404 -176577260 - AluSg SINE Alu -27 283 1 429 321 70 21 chr1 105616514 105616757 -176576907 + MIR SINE MIR 7 261 -1 270 0 0 0 chr1 105617346 105617376 -176576288 + (A)n Simple_repeat Simple_repeat 1 30 0 252 202 96 43 chr1 105617376 105617470 -176576194 + MLT1H LTR MaLR 264 362 -180 495 185 43 0 chr1 105617510 105617602 -176576062 + MLT1H LTR MaLR 454 549 0 329 164 16 0 chr1 105618640 105618701 -176574963 + MER5A DNA MER1_type 41 102 -87 261 250 49 56 chr1 105618769 105618913 -176574751 + MIR SINE MIR 74 216 -46 29 47 0 0 chr1 105619346 105619389 -176574275 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr1 105619749 105619778 -176573886 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 450 36 0 0 chr1 105620034 105620090 -176573574 + (TG)n Simple_repeat Simple_repeat 2 57 0 356 274 135 43 chr1 105620187 105620395 -176573269 + MIR SINE MIR 30 256 -6 2880 183 16 27 chr1 105620498 105621049 -176572615 + MER68 LTR ERV1 1 545 -17 2253 88 11 0 chr1 105621295 105621611 -176572053 + AluSp SINE Alu 1 319 0 1415 112 40 13 chr1 105621632 105621856 -176571808 + MER30 DNA MER1_type 1 230 0 2442 81 0 0 chr1 105622406 105622704 -176570960 + AluY SINE Alu 1 298 -13 267 280 43 0 chr1 105623344 105623437 -176570227 - MIR SINE MIR 0 262 166 381 277 99 0 chr1 105623456 105623597 -176570067 - MIR SINE MIR -54 208 54 4112 137 14 11 chr1 105623715 105624348 -176569316 + MER41B LTR ERV1 1 635 0 238 276 35 77 chr1 105624526 105624696 -176568968 - MIR3 SINE MIR -4 204 42 8764 48 8 11 chr1 105624803 105625875 -176567789 - MER11C LTR ERVK -2 1069 1 558 258 99 24 chr1 105626541 105626754 -176566910 - MIR SINE MIR 0 262 34 439 282 79 70 chr1 105628913 105629229 -176564435 - LTR16C LTR ERVL -118 373 55 419 270 76 38 chr1 105630928 105631113 -176562551 + MIR SINE MIR 57 248 -14 1785 171 93 6 chr1 105631600 105631933 -176561731 - MLT1A1 LTR MaLR -3 362 1 1968 166 69 49 chr1 105633385 105633878 -176559786 - MLT1D LTR MaLR -2 503 1 227 247 65 26 chr1 105635531 105635608 -176558056 + MIR SINE MIR 18 97 -111 685 303 88 35 chr1 105636691 105636952 -176556712 + LTR16C LTR ERVL 215 489 -2 238 310 0 0 chr1 105637052 105637110 -176556554 + L2 LINE L2 3242 3299 -14 5297 163 23 4 chr1 105637370 105639197 -176554467 - L1MB7 LINE L1 -10 6174 4312 219 266 18 124 chr1 105639634 105639714 -176553950 - MIR3 SINE MIR -11 197 131 2358 108 3 0 chr1 105639714 105640021 -176553643 + AluSg1 SINE Alu 1 308 -1 219 266 18 124 chr1 105640021 105640053 -176553611 - MIR3 SINE MIR -77 131 97 361 269 48 0 chr1 105640218 105640322 -176553342 - L2 LINE L2 -2 3270 3162 225 0 0 0 chr1 105640449 105640474 -176553190 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2016 116 0 32 chr1 105640477 105640762 -176552902 - AluSq SINE Alu -37 276 1 202 286 63 0 chr1 105640775 105640838 -176552826 + L2 LINE L2 3242 3308 -5 361 354 16 0 chr1 105641594 105641721 -176551943 + MIR3 SINE MIR 34 162 -46 562 99 0 0 chr1 105641751 105641842 -176551822 - L1M4 LINE L1 -1678 4468 4378 378 313 27 0 chr1 105642424 105642536 -176551128 - MIR SINE MIR -88 174 60 24 0 0 0 chr1 105642704 105642728 -176550936 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 105644180 105644217 -176549447 + AT_rich Low_complexity Low_complexity 1 37 0 390 186 0 69 chr1 105644254 105644356 -176549308 + L1ME3A LINE L1 5324 5418 -752 1672 162 41 32 chr1 105644358 105644512 -176549152 + MLT1A1 LTR MaLR 1 152 -213 1935 142 0 53 chr1 105644512 105644659 -176549005 + AluSx SINE Alu 1 123 -189 297 0 0 0 chr1 105644659 105644692 -176548972 + (CA)n Simple_repeat Simple_repeat 2 34 0 1935 142 0 53 chr1 105644692 105644867 -176548797 + AluSx SINE Alu 123 306 -6 1672 162 41 32 chr1 105644867 105645027 -176548637 + MLT1A1 LTR MaLR 152 318 -47 2497 214 95 23 chr1 105645050 105645746 -176547918 + L1ME3A LINE L1 5416 6161 -9 4792 168 19 15 chr1 105645771 105646995 -176546669 + L1MB7 LINE L1 4938 6165 -19 248 329 0 12 chr1 105647315 105647400 -176546264 + MER5A DNA MER1_type 69 152 -37 22 35 0 0 chr1 105647402 105647431 -176546233 + AT_rich Low_complexity Low_complexity 1 29 0 912 229 18 0 chr1 105647455 105647673 -176545991 - MIR SINE MIR -26 236 15 451 264 43 31 chr1 105647954 105648117 -176545547 + L2 LINE L2 2906 3070 -243 231 254 0 48 chr1 105648130 105648193 -176545471 + L2 LINE L2 3210 3269 -3 259 246 16 0 chr1 105648830 105648891 -176544773 - MER91 DNA MER1_type -76 64 3 2248 104 0 3 chr1 105649255 105649552 -176544112 + AluSg SINE Alu 1 296 -14 2464 74 0 13 chr1 105649552 105649863 -176543801 + AluY SINE Alu 1 308 -3 280 218 6 173 chr1 105650331 105650487 -176543177 - L2 LINE L2 0 3272 3143 309 175 16 16 chr1 105650717 105650780 -176542884 + AluSp SINE Alu 131 193 -110 219 186 0 0 chr1 105650797 105650840 -176542824 + CT-rich Low_complexity Low_complexity 3 45 0 1009 189 54 16 chr1 105650845 105650999 -176542665 - AluJb SINE Alu -30 282 118 324 0 0 0 chr1 105650999 105651035 -176542629 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1009 189 54 16 chr1 105651035 105651065 -176542599 - AluJb SINE Alu -194 118 91 202 321 109 30 chr1 105651165 105651330 -176542334 - MIR SINE MIR -20 242 65 455 245 31 0 chr1 105651526 105651624 -176542040 - MIR3 SINE MIR -21 187 87 349 282 108 20 chr1 105652744 105652939 -176540725 + MIR SINE MIR 31 242 -20 612 222 116 65 chr1 105653033 105653308 -176540356 - L1ME4a LINE L1 -33 6088 5800 237 246 18 0 chr1 105655547 105655604 -176538060 - L1ME4a LINE L1 -543 5578 5521 3173 115 14 16 chr1 105656200 105656705 -176536959 - L1MA5A LINE L1 0 6297 5794 2426 80 0 3 chr1 105656776 105657077 -176536587 + AluY SINE Alu 1 300 -11 1230 117 0 0 chr1 105657077 105657239 -176536425 + AluSg/x SINE Alu 132 293 -17 324 254 41 41 chr1 105658540 105658662 -176535002 - MIR SINE MIR -112 150 29 192 239 163 22 chr1 105659131 105659223 -176534441 - L2 LINE L2 0 3313 3209 1833 150 14 7 chr1 105659726 105660012 -176533652 - AluJo SINE Alu -24 288 1 2155 105 7 3 chr1 105660447 105660742 -176532922 - AluSx SINE Alu -16 296 1 201 94 0 0 chr1 105661030 105661062 -176532602 + (CA)n Simple_repeat Simple_repeat 2 33 0 2727 86 58 21 chr1 105661361 105661793 -176531871 - LTR7 LTR ERV1 -2 448 1 252 321 47 9 chr1 105662250 105662356 -176531308 + MIR SINE MIR 35 144 -64 2215 117 0 19 chr1 105662711 105663028 -176530636 + AluSx SINE Alu 1 311 -1 988 142 67 205 chr1 105663296 105663761 -176529903 + LTR7 LTR ERV1 1 388 -62 2898 51 0 0 chr1 105663761 105664112 -176529552 + L1PA4 LINE L1 5802 6152 -3 988 142 67 205 chr1 105664112 105664168 -176529496 + LTR7 LTR ERV1 388 450 0 231 296 122 10 chr1 105664627 105664725 -176528939 + MIR SINE MIR 119 227 -35 250 319 25 25 chr1 105665089 105665208 -176528456 + MIR SINE MIR 16 134 -74 2800 106 53 29 chr1 105665212 105665666 -176527998 - MER4C LTR ERV1 0 465 1 11462 142 28 33 chr1 105665674 105667230 -176526434 - MER4C-int LTR ERV1 -2 6596 5046 2512 72 7 0 chr1 105667230 105667536 -176526128 + AluSp SINE Alu 1 308 -5 11462 142 28 33 chr1 105667536 105668636 -176525028 - MER4C-int LTR ERV1 -1552 5046 3942 4657 148 48 65 chr1 105668632 105670272 -176523392 - MER4C-int LTR ERV1 -2819 3779 786 * 2632 155 20 33 chr1 105670273 105670850 -176522814 - MER4C-int LTR ERV1 -3734 3024 1840 305 148 0 19 chr1 105670915 105670969 -176522695 - MER34C LTR ERV1 -373 212 160 281 229 82 3 chr1 105670994 105671079 -176522585 - MER4C-int LTR ERV1 -3829 1388 851 1758 221 59 40 chr1 105671083 105671508 -176522156 - MER4C-int LTR ERV1 -4060 2271 1839 4046 151 33 9 chr1 105671527 105672221 -176521443 + MER50 LTR ERV1 1 711 -23 250 254 0 0 chr1 105672321 105672376 -176521288 - MER4C-int LTR ERV1 -5912 686 632 212 0 36 0 chr1 105672379 105672407 -176521257 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2532 141 71 26 chr1 105672407 105672898 -176520766 - MER4C-int LTR ERV1 -6030 568 9 3479 98 22 4 chr1 105672910 105673367 -176520297 - MER4C LTR ERV1 0 465 1 4873 146 18 31 chr1 105674751 105675545 -176518119 - LTR39 LTR ERV1 0 783 1 1405 57 0 31 chr1 105676578 105676771 -176516893 - MER75B DNA T2_type -6 237 51 2243 96 7 0 chr1 105677180 105677472 -176516192 + AluSx SINE Alu 1 294 -18 2027 154 3 0 chr1 105677488 105677800 -176515864 + AluSp SINE Alu 1 313 0 1363 117 53 117 chr1 105678030 105678312 -176515352 - MER75 DNA T2_type -250 264 1 646 263 91 0 chr1 105678392 105678567 -176515097 - MIR SINE MIR -6 256 66 483 259 13 3 chr1 105678754 105679073 -176514591 + (TGGA)n Simple_repeat Simple_repeat 1 322 0 464 118 0 71 chr1 105680197 105680282 -176513382 + MADE1 DNA Mariner 2 80 0 328 229 114 38 chr1 105680814 105680919 -176512745 - MER91A DNA MER1_type -31 165 53 24 0 0 0 chr1 105681438 105681462 -176512202 + AT_rich Low_complexity Low_complexity 1 24 0 255 255 115 45 chr1 105681539 105681696 -176511968 - LTR16A LTR ERVL -7 443 276 * 481 231 35 24 chr1 105681682 105681851 -176511813 - MLT1K LTR MaLR -272 316 146 1953 92 4 8 chr1 105681963 105682224 -176511440 + AluSx SINE Alu 38 297 -15 290 313 89 27 chr1 105683092 105683204 -176510460 - L2 LINE L2 -4 3268 3150 203 313 12 36 chr1 105683286 105683369 -176510295 + MIR3 SINE MIR 99 179 -29 462 204 37 28 chr1 105683562 105683670 -176509994 + MIR3 SINE MIR 98 206 -2 1438 224 71 37 chr1 105684189 105684542 -176509122 - MLT1A1 LTR MaLR 0 365 1 2137 124 0 7 chr1 105685072 105685370 -176508294 - AluSx SINE Alu -16 296 1 331 313 72 30 chr1 105685628 105685932 -176507732 - L1MC5 LINE L1 -144 7817 7501 3946 161 59 9 chr1 105686227 105686961 -176506703 + L1MB8 LINE L1 5406 6175 -3 486 0 0 0 chr1 105686961 105687015 -176506649 + (CA)n Simple_repeat Simple_repeat 2 55 0 301 293 32 16 chr1 105688375 105688498 -176505166 + MIR SINE MIR 80 204 -58 207 69 0 0 chr1 105689532 105689561 -176504103 + (GA)n Simple_repeat Simple_repeat 2 30 0 2768 82 14 8 chr1 105690306 105690659 -176503005 - THE1A LTR MaLR 0 355 1 250 343 83 39 chr1 105690689 105690870 -176502794 + L2 LINE L2 2905 3093 -179 2230 134 191 38 chr1 105690942 105691366 -176502298 - LTR45B LTR ERV1 0 489 1 2393 80 0 13 chr1 105691931 105692243 -176501421 + AluY SINE Alu 1 308 -3 1432 247 118 19 chr1 105692427 105692900 -176500764 - LTR33 LTR ERVL -1 520 1 2151 108 0 0 chr1 105693287 105693648 -176500016 + AluSg SINE Alu 3 363 0 773 293 104 58 chr1 105694383 105694725 -176498939 - MLT1L LTR MaLR -8 607 239 2303 121 0 0 chr1 105694725 105695032 -176498632 - AluSx SINE Alu -3 309 3 773 293 104 58 chr1 105695032 105695123 -176498541 - MLT1L LTR MaLR -376 239 154 2578 194 19 8 chr1 105695577 105696088 -176497576 - LTR27 LTR ERV1 -11 490 3 530 284 149 5 chr1 105696291 105696485 -176497179 + MIR SINE MIR 41 262 0 567 264 123 22 chr1 105696488 105696765 -176496899 + L1ME4a LINE L1 5599 5903 -218 1351 263 53 22 chr1 105697569 105698018 -176495646 - L2 LINE L2 0 3313 2851 790 248 90 43 chr1 105698213 105698535 -176495129 - L2 LINE L2 -465 2849 2513 7731 147 12 20 chr1 105698887 105700363 -176493301 + L1MA6 LINE L1 4028 5494 -768 2086 106 0 0 chr1 105700363 105700638 -176493026 + AluSg SINE Alu 1 275 -35 7731 147 12 20 chr1 105700638 105700664 -176493000 + L1MA6 LINE L1 5494 5519 -743 2562 165 20 26 chr1 105700640 105701027 -176492637 + L1MA6 LINE L1 5753 6138 -162 * 1810 157 31 0 chr1 105701027 105701314 -176492350 - AluSx SINE Alu -16 296 1 2562 165 20 26 chr1 105701314 105701416 -176492248 + L1MA6 LINE L1 6138 6239 -61 204 105 0 53 chr1 105701421 105701478 -176492186 + (TA)n Simple_repeat Simple_repeat 2 55 0 383 155 14 0 chr1 105701497 105701568 -176492096 - L1M2 LINE L1 -843 5457 5386 3689 150 28 7 chr1 105701611 105702179 -176491485 - LTR22 LTR ERVK 0 580 1 321 176 44 44 chr1 105703043 105703111 -176490553 - L2 LINE L2 -6 3307 3240 1669 169 7 14 chr1 105703216 105703511 -176490153 + AluJo SINE Alu 5 297 -15 1700 203 26 80 chr1 105703749 105704264 -176489400 + MLT2B1 LTR ERVL 3 414 0 316 342 45 40 chr1 105704271 105704473 -176489191 + L2 LINE L2 2839 3041 -231 3559 206 50 65 chr1 105706805 105707953 -176485711 + L1M4 LINE L1 4166 5296 -850 810 271 196 14 chr1 105707958 105708239 -176485425 + L1MD2 LINE L1 5999 6330 -29 489 291 8 0 chr1 105708575 105708702 -176484962 + L2 LINE L2 3180 3307 -6 279 79 0 0 chr1 105708715 105708753 -176484911 + (GA)n Simple_repeat Simple_repeat 2 39 0 323 322 81 38 chr1 105708986 105709197 -176484467 - L2 LINE L2 -14 3258 3039 267 312 26 39 chr1 105709342 105709496 -176484168 - L2 LINE L2 -254 3018 2867 1564 264 87 4 chr1 105709692 105710143 -176483521 + LTR16C LTR ERVL 1 488 -3 369 0 0 0 chr1 105710143 105710184 -176483480 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr1 105710423 105710451 -176483213 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 105711938 105711973 -176481691 + AT_rich Low_complexity Low_complexity 1 35 0 491 111 0 12 chr1 105712085 105712166 -176481498 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 21 0 0 0 chr1 105712873 105712894 -176480770 + AT_rich Low_complexity Low_complexity 1 21 0 1068 196 175 38 chr1 105713032 105713323 -176480341 + MER46C DNA MER2_type 2 332 -6 2549 224 34 21 chr1 105713879 105714414 -176479250 + MLT1F LTR MaLR 1 542 0 1789 143 70 3 chr1 105714581 105714867 -176478797 - AluSx SINE Alu -7 305 1 1065 181 48 0 chr1 105714904 105715092 -176478572 + AluJo SINE Alu 1 197 -115 1021 149 7 7 chr1 105715091 105715245 -176478419 + AluJb SINE Alu 138 291 -21 * 882 269 163 21 chr1 105715310 105715901 -176477763 - L1MC4a LINE L1 -746 5400 5217 795 177 0 0 chr1 105716391 105716521 -176477143 + MLT1A1 LTR MaLR 236 365 0 1475 113 0 0 chr1 105716561 105716756 -176476908 - AluSx SINE Alu -117 195 1 9240 115 57 47 chr1 105716756 105716888 -176476776 + Tigger1 DNA MER2_type 215 344 -2074 447 19 0 0 chr1 105716888 105716940 -176476724 + (CA)n Simple_repeat Simple_repeat 1 52 0 9240 115 57 47 chr1 105716940 105717171 -176476493 + Tigger1 DNA MER2_type 344 571 -1847 2401 75 0 0 chr1 105717171 105717463 -176476201 + AluY SINE Alu 1 292 -19 9240 115 57 47 chr1 105717463 105718658 -176475006 + Tigger1 DNA MER2_type 571 1789 -629 1189 57 0 7 chr1 105719126 105719267 -176474397 + AluY SINE Alu 1 140 -171 1998 113 25 3 chr1 105719979 105720263 -176473401 + AluSx SINE Alu 1 290 -22 220 324 90 9 chr1 105722032 105722143 -176471521 + L2 LINE L2 3153 3272 0 854 86 0 71 chr1 105722424 105722564 -176471100 - L1MB5 LINE L1 0 6174 6045 2368 95 3 0 chr1 105722620 105722926 -176470738 - AluSp SINE Alu -6 307 1 2289 110 3 0 chr1 105723147 105723447 -176470217 - AluSx SINE Alu -11 301 1 1355 89 6 0 chr1 105723515 105723684 -176469980 - AluSp SINE Alu -143 170 1 3488 130 57 18 chr1 105724877 105725491 -176468173 + Tigger3(Golem) DNA MER2_type 2390 3027 -2 527 254 67 8 chr1 105725500 105725634 -176468030 + L2 LINE L2 3172 3313 0 278 327 106 0 chr1 105725642 105725755 -176467909 - MIR SINE MIR -132 130 6 590 292 139 68 chr1 105726883 105727322 -176466342 - LTR67 LTR ERVL -6 551 82 580 226 150 60 chr1 105727545 105727912 -176465752 + L1ME4a LINE L1 5676 6075 -46 182 366 26 20 chr1 105728245 105728398 -176465266 + L2 LINE L2 1854 2007 -1307 1376 300 38 22 chr1 105729422 105729925 -176463739 - MLT1K LTR MaLR 0 588 78 2277 115 0 0 chr1 105729978 105730282 -176463382 + AluSc SINE Alu 1 304 -5 268 274 195 0 chr1 105730410 105730523 -176463141 - L2 LINE L2 -1 3271 3137 680 163 118 26 chr1 105731435 105731588 -176462076 + MER20 DNA MER1_type 36 202 -17 191 319 53 21 chr1 105731668 105731762 -176461902 - MIR3 SINE MIR -15 193 97 246 309 36 0 chr1 105731773 105731857 -176461807 + MIR SINE MIR 65 151 -111 390 65 0 0 chr1 105731867 105731913 -176461751 + U6 snRNA snRNA 1 46 -61 282 239 26 60 chr1 105731925 105732042 -176461622 + MIR SINE MIR 137 249 -13 188 216 0 0 chr1 105732545 105732582 -176461082 + L3b LINE CR1 1546 1582 -1 2427 67 0 10 chr1 105732834 105733131 -176460533 + AluY SINE Alu 1 294 -17 371 260 31 10 chr1 105733324 105733420 -176460244 - MIR SINE MIR -150 112 15 207 0 0 0 chr1 105734155 105734178 -176459486 + (T)n Simple_repeat Simple_repeat 1 23 0 2285 104 3 13 chr1 105734453 105734762 -176458902 + AluSq SINE Alu 1 306 -7 429 229 266 9 chr1 105734762 105734871 -176458793 - MIR SINE MIR -91 171 35 633 251 86 6 chr1 105734877 105735040 -176458624 + MER45A DNA AcHobo 3 178 0 192 163 0 0 chr1 105735179 105735222 -176458442 + A-rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr1 105735394 105735419 -176458245 + AT_rich Low_complexity Low_complexity 1 25 0 2292 98 9 25 chr1 105737560 105737876 -176455788 - AluSx SINE Alu -1 311 1 479 243 27 27 chr1 105737904 105738015 -176455649 - MIR SINE MIR -145 117 7 21 57 0 0 chr1 105738019 105738054 -176455610 + AT_rich Low_complexity Low_complexity 1 35 0 331 277 50 42 chr1 105738061 105738180 -176455484 - L2 LINE L2 -189 3124 3005 2258 97 3 3 chr1 105738520 105738820 -176454844 + AluSg1 SINE Alu 1 300 -9 582 186 36 50 chr1 105738870 105738930 -176454734 - Charlie1 DNA MER1_type 0 2761 2702 2096 137 0 7 chr1 105738930 105739229 -176454435 + AluJb SINE Alu 1 297 -15 582 186 36 50 chr1 105739229 105739308 -176454356 - Charlie1 DNA MER1_type -59 2702 2624 * 1042 190 77 5 chr1 105739297 105739518 -176454146 - Charlie1 DNA MER1_type -2524 237 1 809 173 0 30 chr1 105739551 105739684 -176453980 - FLAM_C SINE Alu -4 129 1 1094 170 97 28 chr1 105739713 105739960 -176453704 - MLT1E3 LTR MaLR 0 624 361 1068 149 105 60 chr1 105739961 105740174 -176453490 - MLT1E3 LTR MaLR -395 259 32 2147 112 3 0 chr1 105740174 105740468 -176453196 - AluSx SINE Alu -14 298 4 1068 149 105 60 chr1 105740468 105740502 -176453162 - MLT1E3 LTR MaLR -622 32 1 404 203 203 23 chr1 105740648 105740776 -176452888 + MIR SINE MIR 94 244 -18 2491 52 0 52 chr1 105740836 105741161 -176452503 - AluY SINE Alu -3 308 1 3961 153 34 4 chr1 105741190 105741865 -176451799 + L1MB7 LINE L1 5454 6148 -36 1316 253 17 3 chr1 105741866 105742159 -176451505 + MLT1G LTR MaLR 292 588 -2 2342 86 0 10 chr1 105742698 105743000 -176450664 - AluSg SINE Alu -11 299 1 338 252 88 44 chr1 105743529 105743688 -176449976 + L1MC5 LINE L1 7708 7873 -88 2277 81 0 39 chr1 105743911 105744220 -176449444 + AluSc SINE Alu 1 297 -12 407 239 22 0 chr1 105744587 105744679 -176448985 + MER115 DNA AcHobo 154 247 -446 238 154 0 0 chr1 105744846 105744885 -176448779 + Zaphod DNA AcHobo 3992 4030 -1 377 309 81 7 chr1 105744886 105745035 -176448629 - MIR SINE MIR -95 167 8 313 257 0 0 chr1 105745710 105745780 -176447884 - MIR SINE MIR -40 222 153 375 40 20 0 chr1 105745780 105745830 -176447834 + MADE1 DNA Mariner 1 51 -29 233 218 0 77 chr1 105746212 105746290 -176447374 + L1MC4 LINE L1 6632 6703 -1339 229 183 33 17 chr1 105746262 105746322 -176447342 - L1MC4 LINE L1 -1339 6703 6643 * 230 160 32 11 chr1 105746350 105746444 -176447220 + (TA)n Simple_repeat Simple_repeat 2 97 0 906 148 0 8 chr1 105746505 105746633 -176447031 + FLAM_C SINE Alu 1 127 -6 26 50 0 0 chr1 105746633 105746673 -176446991 + AT_rich Low_complexity Low_complexity 1 40 0 210 242 30 30 chr1 105746674 105746740 -176446924 - L2 LINE L2 -14 3299 3234 445 291 114 30 chr1 105747001 105747238 -176446426 - MIR SINE MIR -4 258 2 1928 147 3 16 chr1 105747487 105747800 -176445864 + AluJo SINE Alu 1 309 -3 702 276 91 55 chr1 105747818 105748202 -176445462 - MLT1K LTR MaLR -21 567 170 183 290 0 16 chr1 105748318 105748380 -176445284 - L2 LINE L2 -93 3220 3160 21 0 0 0 chr1 105749709 105749730 -176443934 + AT_rich Low_complexity Low_complexity 1 21 0 2335 91 0 28 chr1 105750035 105750355 -176443309 + AluY SINE Alu 1 311 0 2110 103 11 0 chr1 105750859 105751169 -176442495 + AluSx SINE Alu 1 313 0 208 269 171 46 chr1 105751183 105751358 -176442306 - MIR3 SINE MIR -9 199 3 1905 162 13 3 chr1 105751422 105751730 -176441934 + AluJo SINE Alu 1 311 -1 2301 104 0 3 chr1 105752040 105752339 -176441325 - AluSg SINE Alu -12 298 1 492 178 0 11 chr1 105752852 105752942 -176440722 - AluJb SINE Alu -22 290 202 2421 85 3 0 chr1 105752974 105753280 -176440384 + AluSx SINE Alu 1 307 -5 843 259 103 0 chr1 105753397 105753621 -176440043 + MIR SINE MIR 2 248 -14 186 250 0 0 chr1 105754060 105754100 -176439564 - L2 LINE L2 0 3313 3274 204 240 260 10 chr1 105754639 105754735 -176438929 + L2 LINE L2 3193 3312 -1 520 113 14 0 chr1 105755003 105755074 -176438590 - AluSg/x SINE Alu -121 189 118 234 194 0 174 chr1 105755075 105755173 -176438491 + MIR SINE MIR 70 150 -112 1625 132 7 82 chr1 105755688 105756026 -176437638 + AluSx SINE Alu 1 315 0 1555 160 66 10 chr1 105756740 105757028 -176436636 + AluJo SINE Alu 1 304 -8 2173 106 3 0 chr1 105757235 105757541 -176436123 + AluSx SINE Alu 1 307 0 1220 223 21 7 chr1 105758323 105758605 -176435059 + MLT2D LTR ERVL 21 306 -108 866 181 54 0 chr1 105758605 105758771 -176434893 - FRAM SINE Alu -6 170 1 574 144 8 121 chr1 105758772 105758904 -176434760 + MLT2D LTR ERVL 298 414 0 * 688 278 102 29 chr1 105758904 105759210 -176434454 - MLT1J2 LTR MaLR -21 429 101 1528 182 31 3 chr1 105759558 105759849 -176433815 + AluJo SINE Alu 1 299 -13 2246 114 0 0 chr1 105759929 105760226 -176433438 + AluSx SINE Alu 1 297 -15 278 276 71 46 chr1 105760448 105760644 -176433020 + L2 LINE L2 2517 2717 -597 1236 225 73 83 chr1 105760709 105761202 -176432462 + MLT1H LTR MaLR 22 512 -37 2039 134 0 3 chr1 105761202 105761520 -176432144 - AluSx SINE Alu 0 317 1 1236 225 73 83 chr1 105761520 105761558 -176432106 + MLT1H LTR MaLR 512 549 0 351 257 194 68 chr1 105761661 105761898 -176431766 - L2 LINE L2 -974 2340 2074 231 146 0 0 chr1 105762603 105762644 -176431020 + (GA)n Simple_repeat Simple_repeat 2 42 0 423 0 0 0 chr1 105762646 105762693 -176430971 + (TG)n Simple_repeat Simple_repeat 1 47 0 417 203 0 25 chr1 105762921 105763000 -176430664 + MER63 DNA MER1_type 673 749 -313 874 122 23 0 chr1 105763078 105763209 -176430455 + AluSg SINE Alu 1 134 -176 537 348 21 24 chr1 105763995 105764247 -176429417 - MIR SINE MIR -7 255 5 2141 118 0 3 chr1 105764976 105765265 -176428399 + AluSx SINE Alu 1 288 -24 312 283 145 26 chr1 105765675 105765827 -176427837 - MER5A DNA MER1_type -1 188 19 * 433 233 147 16 chr1 105765702 105765831 -176427833 + MER5A DNA MER1_type 44 189 0 2302 108 0 3 chr1 105766221 105766528 -176427136 - AluSq SINE Alu -7 306 1 944 233 28 0 chr1 105767074 105767289 -176426375 + MIR SINE MIR 11 231 -31 24 32 0 0 chr1 105768106 105768137 -176425527 + AT_rich Low_complexity Low_complexity 1 31 0 676 263 40 44 chr1 105768158 105768386 -176425278 + MIR SINE MIR 2 228 -34 24 0 0 0 chr1 105768886 105768910 -176424754 + AT_rich Low_complexity Low_complexity 1 24 0 248 364 72 15 chr1 105769371 105769635 -176424029 + L2 LINE L2 2507 2785 -529 334 154 0 0 chr1 105769798 105769850 -176423814 + Alu SINE Alu 1 52 -250 236 197 91 0 chr1 105769984 105770050 -176423614 - MIR SINE MIR -74 188 117 2205 114 0 13 chr1 105770504 105770810 -176422854 - AluSx SINE Alu -10 302 1 205 333 0 0 chr1 105770933 105770984 -176422680 - MIR SINE MIR -161 101 51 202 295 0 13 chr1 105771375 105771453 -176422211 + G-rich Low_complexity Low_complexity 3 79 0 1558 196 3 35 chr1 105772462 105772774 -176420890 - AluJo SINE Alu -10 302 1 470 319 80 11 chr1 105773028 105773216 -176420448 - MIR SINE MIR -31 231 31 2075 140 0 7 chr1 105773230 105773538 -176420126 - AluSx SINE Alu -6 306 1 2058 92 22 7 chr1 105773538 105773811 -176419853 - AluY SINE Alu -34 277 1 1567 115 0 0 chr1 105773822 105774030 -176419634 - AluSg/x SINE Alu -12 298 91 193 402 25 0 chr1 105774141 105774263 -176419401 - L2 LINE L2 -223 3049 2925 2456 239 100 1 chr1 105774768 105775439 -176418225 + MER20B DNA MER1_type 46 782 -1 686 274 6 0 chr1 105775846 105776010 -176417654 - L3 LINE CR1 -349 1228 1064 458 258 0 8 chr1 105776921 105777041 -176416623 + L2 LINE L2 3195 3313 0 2911 148 64 4 chr1 105777677 105778226 -176415438 - L1MB4 LINE L1 -6 6174 5593 35 41 0 0 chr1 105778226 105778275 -176415389 + AT_rich Low_complexity Low_complexity 1 49 0 263 246 0 0 chr1 105778627 105778688 -176414976 + L1MD3 LINE L1 7626 7686 -309 254 130 0 0 chr1 105778788 105778834 -176414830 + L1MC4a LINE L1 7763 7808 0 1853 187 11 38 chr1 105779996 105780295 -176413369 + MLT1A1 LTR MaLR 1 290 -75 2250 88 40 7 chr1 105780295 105780591 -176413073 - AluY SINE Alu -5 306 1 1853 187 11 38 chr1 105780591 105780660 -176413004 + MLT1A1 LTR MaLR 290 359 -6 2198 123 48 31 chr1 105780770 105781128 -176412536 + THE1B LTR MaLR 1 364 0 1845 116 85 17 chr1 105781727 105782020 -176411644 + AluSq SINE Alu 1 313 0 353 342 24 10 chr1 105782818 105782983 -176410681 + MIR SINE MIR 21 185 -62 33 105 0 0 chr1 105784254 105784378 -176409286 + AT_rich Low_complexity Low_complexity 1 124 0 1717 122 8 4 chr1 105785333 105785578 -176408086 - AluSx SINE Alu -66 246 1 260 250 26 0 chr1 105786147 105786223 -176407441 - MLT1K LTR MaLR 0 588 511 1432 284 41 24 chr1 105786405 105786867 -176406797 + MLT1J LTR MaLR 5 474 -37 1695 155 70 26 chr1 105787569 105787910 -176405754 - MLT1A1 LTR MaLR 0 365 10 2062 244 33 50 chr1 105787919 105788465 -176405199 - MLT1A1-int LTR MaLR 0 1735 1199 356 191 0 0 chr1 105788541 105788604 -176405060 - MLT1A1-int LTR MaLR -994 741 679 3120 202 38 14 chr1 105788751 105789391 -176404273 - MLT1A1-int LTR MaLR -1080 655 1 1475 202 30 19 chr1 105789391 105789752 -176403912 - MLT1A1 LTR MaLR 0 365 1 372 218 78 28 chr1 105789957 105790099 -176403565 + MIR SINE MIR 86 234 -28 220 329 24 12 chr1 105790191 105790276 -176403388 - MIR SINE MIR -156 106 21 186 304 0 43 chr1 105790449 105790518 -176403146 - L2 LINE L2 -181 3091 3026 508 200 40 0 chr1 105790894 105790994 -176402670 + L2 LINE L2 3210 3313 0 2007 128 0 72 chr1 105791300 105791635 -176402029 + AluJb SINE Alu 1 311 -1 1088 179 0 0 chr1 105791636 105791809 -176401855 + AluJo/FRAM SINE Alu 131 303 -9 2033 157 0 3 chr1 105791816 105792121 -176401543 + AluSx SINE Alu 1 304 -8 895 218 142 46 chr1 105792275 105792578 -176401086 + MSTD LTR MaLR 1 332 -64 1869 149 0 23 chr1 105792582 105792884 -176400780 - AluSx SINE Alu -16 296 2 355 216 0 0 chr1 105792897 105792971 -176400693 - MLT1A1 LTR MaLR -13 383 310 223 247 11 79 chr1 105793028 105793117 -176400547 - MIR3 SINE MIR -45 163 81 2437 167 9 27 chr1 105793234 105793676 -176399988 - Tigger2a DNA MER2_type 0 434 1 1626 191 24 53 chr1 105793760 105794136 -176399528 - MLT1A1 LTR MaLR 0 365 1 435 19 0 0 chr1 105794350 105794402 -176399262 + (TA)n Simple_repeat Simple_repeat 2 53 0 301 314 162 16 chr1 105794783 105795254 -176398410 + L2 LINE L2 2773 3309 -4 1374 218 81 9 chr1 105795354 105795702 -176397962 - MER93b LTR ERV1 0 373 1 220 313 188 0 chr1 105795704 105795800 -176397864 - L2 LINE L2 -13 3259 3146 456 195 0 0 chr1 105795853 105795935 -176397729 - AluJo SINE Alu -12 300 219 588 141 11 0 chr1 105795940 105796032 -176397632 - AluJo SINE Alu -173 139 47 1665 154 86 4 chr1 105797228 105797508 -176396156 - AluJb SINE Alu -9 303 1 379 242 46 31 chr1 105797903 105798062 -176395602 + MIR SINE MIR 42 206 -56 245 311 138 88 chr1 105798083 105798524 -176395140 - L2 LINE L2 -2 3270 2808 2188 181 137 15 chr1 105798756 105799297 -176394367 - L1MB3 LINE L1 -2 6181 5575 393 271 16 31 chr1 105799482 105799611 -176394053 - MER69A DNA AcHobo -10 167 41 689 303 133 20 chr1 105799681 105800124 -176393540 + MLT1K LTR MaLR 61 553 -35 673 213 21 7 chr1 105800365 105800506 -176393158 + MER21B LTR ERV1 323 465 -398 1860 119 27 37 chr1 105800603 105800898 -176392766 - AluSx SINE Alu -20 292 1 352 309 59 7 chr1 105800996 105801148 -176392516 + MIR SINE MIR 22 181 -81 249 203 47 16 chr1 105801161 105801225 -176392439 + MER94 DNA DNA 1 66 -68 314 164 36 0 chr1 105801255 105801310 -176392354 - MER94 DNA DNA -63 71 15 193 263 0 0 chr1 105801330 105801368 -176392296 + L2 LINE L2 3252 3289 -24 4027 93 28 0 chr1 105801466 105802005 -176391659 - MER41A LTR ERV1 0 554 1 3817 192 30 24 chr1 105802357 105803238 -176390426 + L1ME1 LINE L1 5276 6161 -5 4324 140 27 13 chr1 105803294 105803987 -176389677 + MER50 LTR ERV1 12 714 -20 657 176 42 0 chr1 105804230 105804349 -176389315 - L1MB4 LINE L1 -54 6126 6003 23 0 0 0 chr1 105804845 105804868 -176388796 + AT_rich Low_complexity Low_complexity 1 23 0 918 139 0 0 chr1 105804869 105804998 -176388666 - FLAM_C SINE Alu -12 131 3 22 94 0 0 chr1 105806055 105806119 -176387545 + GC_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr1 105806589 105806615 -176387049 + GC_rich Low_complexity Low_complexity 1 26 0 236 205 68 120 chr1 105808549 105808666 -176384998 - MIR SINE MIR -68 194 84 2344 86 0 7 chr1 105808772 105809076 -176384588 - AluSx SINE Alu -10 302 1 330 268 22 22 chr1 105809410 105809548 -176384116 + MIR SINE MIR 28 165 -97 682 175 67 0 chr1 105811162 105811282 -176382382 - FLAM_C SINE Alu -5 128 1 2118 142 0 3 chr1 105811991 105812302 -176381362 - AluSx SINE Alu -2 310 1 343 113 42 28 chr1 105812525 105812596 -176381068 - MER69 DNA AcHobo -4 2522 2451 232 71 143 0 chr1 105812593 105812635 -176381029 - MER69 DNA AcHobo -1080 146 99 * 691 191 136 10 chr1 105812690 105812889 -176380775 + MIR SINE MIR 3 226 -36 2178 122 10 0 chr1 105814506 105814802 -176378862 - AluSx SINE Alu -13 299 1 2148 134 0 3 chr1 105814895 105815201 -176378463 - AluSx SINE Alu -7 305 1 2277 101 3 7 chr1 105816074 105816382 -176377282 + AluSp SINE Alu 1 307 -6 377 293 162 6 chr1 105816566 105816733 -176376931 - MIR SINE MIR -57 205 13 195 288 55 0 chr1 105816891 105816964 -176376700 - L2 LINE L2 -1347 1967 1891 1392 91 0 6 chr1 105817028 105817204 -176376460 - AluJb SINE Alu -52 260 86 1305 152 28 14 chr1 105818311 105818528 -176375136 + AluJo SINE Alu 83 302 -10 573 274 40 73 chr1 105819580 105819934 -176373730 - L3 LINE CR1 -220 1357 1016 1967 106 44 41 chr1 105821334 105821627 -176372037 - AluSq SINE Alu -19 294 1 1720 159 51 0 chr1 105821635 105821911 -176371753 - AluJb SINE Alu -22 290 1 195 241 0 0 chr1 105822398 105822452 -176371212 - L2 LINE L2 -307 2965 2912 226 167 42 21 chr1 105823066 105823114 -176370550 + L2 LINE L2 3179 3227 -86 658 189 21 95 chr1 105823978 105824223 -176369441 - MER106B DNA MER1_type 0 236 1 1565 189 10 13 chr1 105824243 105824549 -176369115 - AluJo SINE Alu -7 305 1 28 0 0 0 chr1 105824554 105824582 -176369082 + AT_rich Low_complexity Low_complexity 1 28 0 2221 101 0 0 chr1 105824596 105824882 -176368782 + AluSx SINE Alu 25 310 -2 2385 92 0 0 chr1 105825524 105825830 -176367834 - AluY SINE Alu -1 310 5 222 249 8 21 chr1 105826331 105826410 -176367254 - MIR SINE MIR -122 86 8 2278 103 0 0 chr1 105827130 105827421 -176366243 + AluSx SINE Alu 1 291 -21 624 143 0 0 chr1 105827553 105827651 -176366013 + AluJ/FLAM SINE Alu 2 99 -213 1654 181 11 0 chr1 105828666 105828942 -176364722 - AluJo SINE Alu -30 282 4 27 49 0 0 chr1 105829040 105829081 -176364583 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr1 105831996 105832024 -176361640 + AT_rich Low_complexity Low_complexity 1 28 0 2343 111 0 0 chr1 105832034 105832341 -176361323 - AluSx SINE Alu -5 307 1 786 199 0 0 chr1 105832343 105832474 -176361190 - AluJo/FLAM SINE Alu -180 132 2 397 249 90 23 chr1 105833003 105833180 -176360484 + L1ME4a LINE L1 5922 6110 -11 192 276 114 67 chr1 105835030 105835135 -176358529 - MIR SINE MIR -62 146 37 27 0 0 0 chr1 105836415 105836442 -176357222 + AT_rich Low_complexity Low_complexity 1 27 0 261 219 73 49 chr1 105837406 105837488 -176356176 + MER5B DNA MER1_type 94 177 -1 270 323 10 0 chr1 105837681 105837780 -176355884 - L2 LINE L2 -241 3031 2932 979 182 12 0 chr1 105837973 105838143 -176355521 + FAM SINE Alu 1 172 -3 781 174 161 11 chr1 105838650 105838917 -176354747 - LTR49 LTR ERV1 -1 594 434 963 166 99 71 chr1 105838937 105839190 -176354474 - LTR29 LTR ERV1 -360 262 3 2158 111 0 0 chr1 105839318 105839598 -176354066 - AluSx SINE Alu -30 282 3 2278 88 17 3 chr1 105839736 105840031 -176353633 + AluSp SINE Alu 1 299 -14 2294 107 0 0 chr1 105841482 105841772 -176351892 - AluSx SINE Alu -22 290 1 285 219 333 0 chr1 105841945 105842068 -176351596 + MIR SINE MIR 88 251 -11 994 144 19 0 chr1 105842551 105842711 -176350953 - AluSg/x SINE Alu -13 299 137 2393 84 3 10 chr1 105843263 105843571 -176350093 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr1 105843655 105843676 -176349988 + AT_rich Low_complexity Low_complexity 1 21 0 291 308 100 0 chr1 105843728 105843858 -176349806 - L1ME LINE L1 -371 5750 5608 324 0 0 0 chr1 105843859 105843895 -176349769 + (TG)n Simple_repeat Simple_repeat 1 36 0 2019 121 14 10 chr1 105844359 105844491 -176349173 + AluSg SINE Alu 1 131 -179 234 91 0 0 chr1 105844491 105844524 -176349140 + (TA)n Simple_repeat Simple_repeat 2 34 0 2019 121 14 10 chr1 105844524 105844688 -176348976 + AluSg SINE Alu 131 298 -12 22 0 0 0 chr1 105845115 105845137 -176348527 + AT_rich Low_complexity Low_complexity 1 22 0 845 201 29 29 chr1 105845192 105845401 -176348263 + MIR SINE MIR 8 216 -46 348 242 178 32 chr1 105847578 105847735 -176345929 - MIR SINE MIR 0 262 83 1997 105 74 0 chr1 105848173 105848458 -176345206 - AluSx SINE Alu -6 306 1 695 266 123 27 chr1 105849368 105849770 -176343894 - HAL1b LINE L1 -26 6095 891 1707 173 7 23 chr1 105849898 105850205 -176343459 - AluJb SINE Alu -10 302 1 198 344 146 0 chr1 105850494 105850645 -176343019 - MIR3 SINE MIR -15 193 21 409 270 56 34 chr1 105851173 105851351 -176342313 + MIR SINE MIR 70 251 -11 2304 70 3 48 chr1 105851381 105851696 -176341968 - AluSc SINE Alu -7 302 2 2499 68 0 0 chr1 105851706 105852002 -176341662 - AluY SINE Alu -15 296 1 646 222 0 0 chr1 105852372 105852498 -176341166 - FLAM_A SINE Alu -3 130 5 1082 185 59 23 chr1 105852511 105852795 -176340869 - L1MB2 LINE L1 0 6171 5887 3526 168 39 51 chr1 105852955 105853557 -176340107 - L1MB2 LINE L1 -248 5923 5315 2497 97 0 0 chr1 105853557 105853868 -176339796 - AluY SINE Alu 0 311 1 2473 92 0 0 chr1 105853868 105854172 -176339492 - AluSg SINE Alu -6 304 1 3526 168 39 51 chr1 105854172 105854756 -176338908 - L1MB2 LINE L1 -854 5317 4743 2528 48 6 10 chr1 105855160 105855472 -176338192 - AluY SINE Alu 0 311 1 218 255 153 20 chr1 105857962 105858060 -176335604 + MIR3 SINE MIR 64 174 -34 402 218 128 45 chr1 105858582 105858761 -176334903 + MIR SINE MIR 62 255 -7 223 313 131 10 chr1 105860723 105860822 -176332842 - MIR3 SINE MIR -32 176 66 2331 92 20 0 chr1 105861032 105861336 -176332328 + AluSp SINE Alu 1 310 -3 309 212 254 42 chr1 105862311 105862429 -176331235 + MIR SINE MIR 9 151 -111 2120 112 10 10 chr1 105862457 105862760 -176330904 + AluSq SINE Alu 11 313 0 201 283 167 40 chr1 105863571 105863769 -176329895 - L3b LINE CR1 -120 1463 1241 22 0 0 0 chr1 105865343 105865365 -176328299 + AT_rich Low_complexity Low_complexity 1 22 0 1371 213 27 27 chr1 105865606 105865944 -176327720 + MER58B DNA MER1_type 4 341 0 489 281 130 11 chr1 105871364 105871549 -176322115 - L3b LINE CR1 -186 1397 1191 2160 240 118 61 chr1 105871903 105874123 -176319541 - HAL1 LINE L1 -1 2506 62 2044 82 4 7 chr1 105874440 105874760 -176318904 + AluSc SINE Alu 1 319 0 252 26 0 103 chr1 105875310 105875322 -176318342 - MER41B LTR ERV1 -122 513 501 2309 80 0 3 chr1 105875322 105875623 -176318041 + AluSc SINE Alu 1 300 -9 252 26 0 103 chr1 105875623 105875649 -176318015 - MER41B LTR ERV1 -134 501 479 249 301 46 116 chr1 105876328 105876402 -176317262 - MIR SINE MIR -31 177 99 2022 134 0 3 chr1 105876402 105876707 -176316957 + AluSx SINE Alu 1 304 -8 249 301 46 116 chr1 105876707 105876805 -176316859 - MIR SINE MIR -109 99 17 465 272 25 94 chr1 105877017 105877252 -176316412 + MIR SINE MIR 44 262 0 252 0 0 0 chr1 105878529 105878557 -176315107 + (CTGGGG)n Simple_repeat Simple_repeat 4 31 0 478 187 12 111 chr1 105878557 105878728 -176314936 - MER20 DNA MER1_type -65 154 1 213 377 68 7 chr1 105879144 105879290 -176314374 + MIR SINE MIR 11 165 -97 * 260 192 0 55 chr1 105879280 105879353 -176314311 + L2 LINE L2 2162 2230 -1084 202 274 20 39 chr1 105879474 105879525 -176314139 - L2 LINE L2 -10 3262 3213 3258 260 195 22 chr1 105879609 105881343 -176312321 + L2 LINE L2 1272 3313 0 474 250 83 69 chr1 105881965 105882169 -176311495 + L2 LINE L2 3106 3312 -1 180 256 23 93 chr1 105882715 105882801 -176310863 - MIR SINE MIR -70 192 113 1384 163 101 11 chr1 105883396 105883673 -176309991 + AluJb SINE Alu 11 312 0 193 304 44 104 chr1 105884560 105884810 -176308854 + L2 LINE L2 3033 3267 -5 2342 61 0 3 chr1 105885190 105885487 -176308177 - AluY SINE Alu -15 296 1 329 378 67 4 chr1 105885537 105885775 -176307889 + MIR SINE MIR 4 256 -6 1022 300 117 7 chr1 105885858 105886312 -176307352 + MLT1J LTR MaLR 5 508 -3 227 182 18 36 chr1 105886767 105886822 -176306842 + MER5C DNA MER1_type 1 54 -270 411 274 37 15 chr1 105887017 105887152 -176306512 + MER5B DNA MER1_type 41 178 0 2291 90 0 0 chr1 105887259 105887558 -176306106 - AluSg SINE Alu -11 299 1 259 344 46 38 chr1 105888289 105888420 -176305244 - L2 LINE L2 -4 3268 3137 634 327 76 19 chr1 105888551 105889189 -176304475 + L2 LINE L2 1641 2407 -907 229 354 79 60 chr1 105889433 105889851 -176303813 + L2 LINE L2 2550 2975 -339 1937 163 41 15 chr1 105892135 105892473 -176301191 + MER7A DNA MER2_type 2 346 0 2129 135 0 0 chr1 105892840 105893187 -176300477 + AluJb SINE Alu 1 347 0 319 275 110 9 chr1 105893196 105893305 -176300359 + MIR3 SINE MIR 64 183 -25 1353 288 3 92 chr1 105893741 105894068 -176299596 + AluSx SINE Alu 1 298 -14 281 288 110 0 chr1 105894240 105894313 -176299351 + L2 LINE L2 3187 3267 -5 335 233 151 87 chr1 105894602 105894821 -176298843 + MER112 DNA MER1_type 28 260 0 2122 96 0 7 chr1 105894989 105895281 -176298383 - AluSc SINE Alu -19 290 1 615 234 190 5 chr1 105895631 105895815 -176297849 - MIR SINE MIR -1 261 44 1968 102 28 7 chr1 105896662 105896947 -176296717 + AluSq SINE Alu 1 291 -22 382 267 42 0 chr1 105896970 105897090 -176296574 + L1ME2 LINE L1 6039 6163 -1 1623 170 25 0 chr1 105897462 105897739 -176295925 + AluJo SINE Alu 1 284 -28 26 0 0 0 chr1 105897740 105897766 -176295898 + AT_rich Low_complexity Low_complexity 1 26 0 654 195 226 49 chr1 105898598 105898824 -176294840 + L1MC4a LINE L1 6159 6416 -1392 1172 201 162 16 chr1 105898906 105899209 -176294455 + L1MD3 LINE L1 6690 7036 -959 195 100 0 0 chr1 105899209 105899239 -176294425 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2152 98 7 3 chr1 105899258 105899554 -176294110 - AluSx SINE Alu -13 299 3 443 132 92 0 chr1 105899571 105899647 -176294017 + MLT1F1 LTR MaLR 37 119 -448 1481 173 55 127 chr1 105899650 105899938 -176293726 + L1MD3 LINE L1 7187 7480 -305 909 137 0 0 chr1 105899938 105900069 -176293595 + FLAM_C SINE Alu 1 131 -12 1481 173 55 127 chr1 105900069 105900355 -176293309 + L1MD3 LINE L1 7480 7785 0 1816 153 17 0 chr1 105901403 105901704 -176291960 + AluJb SINE Alu 3 308 -4 2595 173 36 12 chr1 105901714 105902218 -176291446 + L1MA9 LINE L1 5767 6282 -30 575 248 160 29 chr1 105903662 105903868 -176289796 - MIR SINE MIR -2 260 28 2177 103 3 3 chr1 105904144 105904455 -176289209 - AluSx SINE Alu -1 311 1 319 275 110 9 chr1 105904891 105905000 -176288664 - MIR3 SINE MIR -25 183 64 2117 138 0 0 chr1 105905009 105905356 -176288308 - AluJb SINE Alu 0 347 1 1937 163 41 15 chr1 105905723 105906061 -176287603 - MER7A DNA MER2_type 0 346 2 256 381 19 41 chr1 105908472 105908742 -176284922 - L2 LINE L2 -491 2823 2560 634 329 81 18 chr1 105908981 105909640 -176284024 - L2 LINE L2 -881 2433 1641 274 328 46 38 chr1 105909771 105909902 -176283762 + L2 LINE L2 3137 3268 -4 2287 88 0 0 chr1 105910633 105910930 -176282734 + AluSg SINE Alu 1 297 -13 411 274 37 15 chr1 105911037 105911172 -176282492 - MER5B DNA MER1_type 0 178 41 227 182 18 36 chr1 105911367 105911422 -176282242 - MER5C DNA MER1_type -270 54 1 1088 308 90 7 chr1 105911877 105912342 -176281322 - MLT1J LTR MaLR -3 508 5 329 378 67 4 chr1 105912425 105912663 -176281001 - MIR SINE MIR -6 256 4 2321 64 0 3 chr1 105912713 105913010 -176280654 + AluY SINE Alu 1 296 -15 193 304 44 104 chr1 105913390 105913640 -176280024 - L2 LINE L2 -5 3267 3033 1367 166 101 11 chr1 105914524 105914801 -176278863 - AluJb SINE Alu 0 312 11 474 250 83 69 chr1 105916026 105916230 -176277434 - L2 LINE L2 -1 3312 3106 3248 261 194 22 chr1 105916852 105918586 -176275078 - L2 LINE L2 0 3313 1272 202 274 20 39 chr1 105918669 105918720 -176274944 + L2 LINE L2 3213 3262 -10 260 192 0 55 chr1 105918841 105918914 -176274750 - L2 LINE L2 -1084 2230 2162 213 377 68 7 chr1 105918904 105919050 -176274614 - MIR SINE MIR -97 165 11 * 478 187 12 111 chr1 105919466 105919637 -176274027 + MER20 DNA MER1_type 1 154 -65 252 0 0 0 chr1 105919637 105919665 -176273999 + (CCCCAG)n Simple_repeat Simple_repeat 4 31 0 465 272 25 94 chr1 105920942 105921177 -176272487 - MIR SINE MIR 0 262 44 249 301 46 116 chr1 105921389 105921487 -176272177 + MIR SINE MIR 17 99 -109 2142 134 0 3 chr1 105921487 105921792 -176271872 - AluSx SINE Alu -8 304 1 249 301 46 116 chr1 105921792 105921866 -176271798 + MIR SINE MIR 99 177 -31 250 26 0 103 chr1 105922545 105922571 -176271093 + MER41A LTR ERV1 398 420 -134 2450 80 0 3 chr1 105922571 105922873 -176270791 - AluSc SINE Alu -8 301 1 250 26 0 103 chr1 105922873 105922885 -176270779 + MER41A LTR ERV1 420 432 -122 2152 86 4 7 chr1 105923435 105923751 -176269913 - AluSc SINE Alu 0 315 1 2165 238 120 62 chr1 105924068 105926286 -176267378 + HAL1 LINE L1 62 2506 -1 408 281 130 11 chr1 105926640 105926825 -176266839 + L3b LINE CR1 1191 1397 -186 1368 216 27 27 chr1 105932244 105932582 -176261082 - MER58B DNA MER1_type 0 341 4 22 0 0 0 chr1 105932823 105932845 -176260819 + AT_rich Low_complexity Low_complexity 1 22 0 201 283 167 40 chr1 105934419 105934617 -176259047 + L3b LINE CR1 1241 1463 -120 2120 112 10 10 chr1 105935427 105935730 -176257934 - AluSq SINE Alu 0 313 11 309 212 254 42 chr1 105935758 105935876 -176257788 - MIR SINE MIR -111 151 9 2331 92 20 0 chr1 105936851 105937155 -176256509 - AluSp SINE Alu -3 310 1 223 313 131 10 chr1 105937365 105937464 -176256200 + MIR3 SINE MIR 66 176 -32 391 224 128 45 chr1 105939426 105939605 -176254059 - MIR SINE MIR -7 255 62 218 255 153 20 chr1 105940127 105940225 -176253439 - MIR3 SINE MIR -34 174 64 2305 91 7 0 chr1 105942712 105943008 -176250656 + AluY SINE Alu 1 298 -13 195 100 0 0 chr1 105943027 105943057 -176250607 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1174 201 162 16 chr1 105943057 105943360 -176250304 - L1MD3 LINE L1 -959 7036 6690 657 195 226 49 chr1 105943442 105943668 -176249996 - L1MC4a LINE L1 -1392 6416 6159 26 0 0 0 chr1 105944500 105944526 -176249138 + AT_rich Low_complexity Low_complexity 1 26 0 1739 170 25 0 chr1 105944527 105944804 -176248860 - AluJo SINE Alu -28 284 1 394 267 42 0 chr1 105945176 105945296 -176248368 - L1ME2 LINE L1 -1 6163 6039 2091 102 28 7 chr1 105945319 105945604 -176248060 - AluSq SINE Alu -22 291 1 537 234 190 5 chr1 105946451 105946635 -176247029 + MIR SINE MIR 44 261 -1 2248 96 0 7 chr1 105946985 105947277 -176246387 + AluSc SINE Alu 1 290 -19 351 233 151 87 chr1 105947445 105947664 -176246000 - MER112 DNA MER1_type 0 260 28 253 288 110 0 chr1 105947953 105948026 -176245638 - L2 LINE L2 -5 3267 3187 1798 97 9 130 chr1 105948198 105948537 -176245127 - AluSx SINE Alu -4 298 1 240 244 104 37 chr1 105948755 105948890 -176244774 + L2 LINE L2 3169 3312 -1 2501 127 59 35 chr1 105950800 105950839 -176242825 - L1MB3 LINE L1 -7 6176 6139 2026 110 46 3 chr1 105950839 105951121 -176242543 - AluSg SINE Alu -11 299 6 2501 127 59 35 chr1 105951121 105951539 -176242125 - L1MB3 LINE L1 -44 6139 5708 2193 112 7 0 chr1 105951868 105952172 -176241492 + AluY SINE Alu 1 306 -5 575 268 62 16 chr1 105952532 105952726 -176240938 - MIR SINE MIR -55 207 5 218 217 0 0 chr1 105953392 105953438 -176240226 + T-rich Low_complexity Low_complexity 1 46 0 592 137 11 0 chr1 105954486 105954581 -176239083 - AluJo SINE Alu -178 134 39 30 0 0 0 chr1 105956655 105956685 -176236979 + AT_rich Low_complexity Low_complexity 1 30 0 360 111 0 0 chr1 105957119 105957173 -176236491 + (CTGGGG)n Simple_repeat Simple_repeat 2 55 0 361 235 68 30 chr1 105957579 105957711 -176235953 - MIR SINE MIR -105 157 21 1602 219 105 8 chr1 105958921 105959322 -176234342 + L1ME1 LINE L1 5722 6161 -5 508 268 121 83 chr1 105959858 105959955 -176233709 + L1MEc LINE L1 2146 2238 -3977 682 197 171 80 chr1 105959955 105960194 -176233470 - MIR SINE MIR 0 262 2 508 268 121 83 chr1 105960194 105960808 -176232856 + L1MEc LINE L1 2238 2831 -3384 725 224 31 19 chr1 105960845 105960952 -176232712 + MLT1E LTR MaLR 1 112 -481 1317 182 104 118 chr1 105960952 105961479 -176232185 + MLT2B1 LTR ERVL 1 520 0 725 224 31 19 chr1 105961479 105961532 -176232132 + MLT1E LTR MaLR 112 163 -430 658 178 42 0 chr1 105961542 105961660 -176232004 + MLT1E LTR MaLR 471 593 0 2465 123 80 5 chr1 105961665 105962063 -176231601 - MSTA LTR MaLR 0 428 1 588 256 144 13 chr1 105962126 105962501 -176231163 + L1MEc LINE L1 2923 3346 -2869 321 317 60 44 chr1 105962519 105962885 -176230779 + L1MEc LINE L1 3393 3764 -2451 21 36 0 0 chr1 105962932 105962960 -176230704 + AT_rich Low_complexity Low_complexity 1 28 0 306 253 96 27 chr1 105963073 105963219 -176230445 + MER110 LTR ERV1 201 356 -135 791 218 42 57 chr1 105963222 105963484 -176230180 + L1MC5 LINE L1 6923 7180 -781 1334 218 64 74 chr1 105963578 105964170 -176229494 + L1MC5 LINE L1 7336 7921 -40 1820 165 90 63 chr1 105964191 105964670 -176228994 - LTR22B LTR ERVK 0 492 1 202 214 0 0 chr1 105965957 105965999 -176227665 - L2 LINE L2 -5 3267 3226 257 338 15 0 chr1 105966128 105966261 -176227403 - L2 LINE L2 -224 3048 2914 2296 120 0 0 chr1 105966582 105966881 -176226783 - AluSx SINE Alu -13 299 1 2413 97 0 0 chr1 105967289 105967588 -176226076 - AluSx SINE Alu -13 299 1 1411 148 18 0 chr1 105967752 105967975 -176225689 + L1PA16 LINE L1 5933 6159 -7 656 174 9 0 chr1 105967976 105968091 -176225573 + FLAM_C SINE Alu 2 117 -26 31 26 0 0 chr1 105968100 105968138 -176225526 + AT_rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr1 105968779 105968804 -176224860 + (TG)n Simple_repeat Simple_repeat 2 27 0 1949 117 67 0 chr1 105969343 105969626 -176224038 - AluSg SINE Alu -8 302 1 2146 100 7 7 chr1 105969699 105969990 -176223674 - AluSc SINE Alu -18 291 1 496 175 0 12 chr1 105970231 105970311 -176223353 - LTR35 LTR ERV1 0 618 540 423 172 11 11 chr1 105970439 105970526 -176223138 - LTR43 LTR ERV1 -325 277 191 216 250 0 21 chr1 105970804 105970852 -176222812 + polypurine Low_complexity Low_complexity 5 51 0 274 306 108 0 chr1 105970905 105971016 -176222648 + MIR3 SINE MIR 77 199 -9 330 236 79 42 chr1 105971040 105971205 -176222459 + L1M4 LINE L1 3095 3265 -2881 274 235 0 25 chr1 105971284 105971365 -176222299 + T-rich Low_complexity Low_complexity 5 83 0 1924 142 3 20 chr1 105971586 105971882 -176221782 - AluJo SINE Alu -21 291 1 553 277 19 25 chr1 105972164 105972324 -176221340 + MIR SINE MIR 21 178 -65 2024 114 26 0 chr1 105972384 105972656 -176221008 - AluSx SINE Alu -25 287 9 273 260 80 10 chr1 105972915 105973015 -176220649 + MER5A DNA MER1_type 39 145 -44 532 46 15 0 chr1 105973374 105973439 -176220225 + MLT1B LTR MaLR 1 66 -324 377 230 0 0 chr1 105973598 105973672 -176219992 + MLT1B LTR MaLR 81 154 -236 274 271 14 0 chr1 105975196 105975266 -176218398 - MER96 DNA MER1_type? -104 71 1 22 35 0 0 chr1 105976047 105976076 -176217588 + AT_rich Low_complexity Low_complexity 1 29 0 562 249 131 46 chr1 105976739 105976840 -176216824 + MIR SINE MIR 3 94 -168 2316 117 0 0 chr1 105976840 105977149 -176216515 - AluSx SINE Alu -3 309 1 562 249 131 46 chr1 105977149 105977284 -176216380 + MIR SINE MIR 94 259 -3 322 265 92 78 chr1 105977536 105977830 -176215834 + L1ME4a LINE L1 5588 5885 -236 295 254 90 8 chr1 105977871 105977993 -176215671 + L1ME4a LINE L1 5959 6090 -31 355 200 56 11 chr1 105978530 105978620 -176215044 - L1ME4a LINE L1 -37 6084 5991 542 309 74 13 chr1 105978659 105978889 -176214775 - MIR SINE MIR -6 256 13 405 297 113 42 chr1 105978933 105979325 -176214339 - L1ME4a LINE L1 -196 5925 5486 339 208 195 71 chr1 105979325 105979384 -176214280 + MER112 DNA MER1_type 2 52 -204 261 0 0 0 chr1 105979384 105979413 -176214251 + (CA)n Simple_repeat Simple_repeat 2 30 0 339 208 195 71 chr1 105979413 105979579 -176214085 + MER112 DNA MER1_type 52 255 -1 405 297 113 42 chr1 105979579 105979689 -176213975 - L1ME4a LINE L1 -635 5486 5385 196 258 109 78 chr1 105980181 105980309 -176213355 + L2 LINE L2 2286 2417 -897 1061 219 164 12 chr1 105980517 105980773 -176212891 - AluSc SINE Alu -2 297 3 262 206 190 7 chr1 105981154 105981234 -176212430 + MIR SINE MIR 86 175 -33 2309 105 0 7 chr1 105983165 105983471 -176210193 + AluSx SINE Alu 1 304 -8 575 253 81 11 chr1 105983873 105984047 -176209617 - MIR SINE MIR -32 230 45 343 60 20 0 chr1 105986398 105986448 -176207216 - MADE1 DNA Mariner 0 80 30 2908 233 81 15 chr1 105986457 105987240 -176206424 - L1MB8 LINE L1 -32 6146 5308 2189 127 0 13 chr1 105987240 105987547 -176206117 - AluSx SINE Alu -9 303 1 2908 233 81 15 chr1 105987547 105987562 -176206102 - L1MB8 LINE L1 -870 5308 5295 5544 146 32 8 chr1 105987603 105988840 -176204824 - L1MA4 LINE L1 -97 6203 4943 2717 196 53 19 chr1 105988841 105989616 -176204048 - L1MB8 LINE L1 -838 5672 4617 4928 231 41 13 chr1 105989617 105990939 -176202725 - L1ME4a LINE L1 -878 5268 3910 6105 187 27 29 chr1 105990943 105991720 -176201944 - ERVL LTR ERVL -2917 2847 2070 1628 161 0 15 chr1 105991720 105991994 -176201670 + AluJb SINE Alu 6 275 -37 180 0 0 0 chr1 105992001 105992021 -176201643 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6105 187 27 29 chr1 105992021 105992406 -176201258 - ERVL LTR ERVL -3700 2064 1679 2570 133 64 7 chr1 105992410 105992815 -176200849 - MSTA LTR MaLR 0 428 1 2369 84 0 7 chr1 105993192 105993500 -176200164 + AluY SINE Alu 1 306 -5 322 327 26 45 chr1 105994164 105994320 -176199344 + L2 LINE L2 2893 3045 -227 481 282 16 102 chr1 105994581 105994836 -176198828 - MIR SINE MIR 0 262 30 278 342 36 57 chr1 105995301 105995396 -176198268 - MIR SINE MIR -14 248 157 1758 144 21 21 chr1 105995396 105995687 -176197977 - AluJb SINE Alu -21 291 1 278 342 36 57 chr1 105995687 105995784 -176197880 - MIR SINE MIR -105 157 60 392 243 78 0 chr1 105995840 105995943 -176197721 + MIR3 SINE MIR 63 173 -35 214 354 140 7 chr1 105996858 105997143 -176196521 + L2 LINE L2 2118 2440 -874 533 278 13 7 chr1 105997439 105997590 -176196074 - Charlie2 DNA MER1_type -2259 603 452 839 244 34 90 chr1 105998147 105998367 -176195297 + L1ME4a LINE L1 5487 5670 -451 1628 104 153 0 chr1 105998367 105998616 -176195048 + AluSp SINE Alu 1 287 -26 839 244 34 90 chr1 105998616 105998833 -176194831 + L1ME4a LINE L1 5670 5898 -223 321 310 18 0 chr1 105999679 105999792 -176193872 + HERV16 LTR ERVL 2716 2830 -2166 277 223 16 166 chr1 105999937 106000144 -176193520 + L1MC/D LINE L1 5668 5835 -394 2232 125 0 0 chr1 106000223 106000526 -176193138 - AluSx SINE Alu -8 304 2 312 296 101 41 chr1 106000819 106001182 -176192482 + LTR16A1 LTR ERVL 73 446 -11 282 274 26 60 chr1 106001202 106001319 -176192345 - MIR SINE MIR -1 261 149 708 218 93 31 chr1 106001326 106001519 -176192145 + MIR SINE MIR 7 211 -51 290 314 20 20 chr1 106001546 106001584 -176192080 - MIR SINE MIR -66 142 105 1455 128 231 8 chr1 106001584 106001826 -176191838 + AluJo SINE Alu 1 296 -6 290 314 20 20 chr1 106001826 106001926 -176191738 - MIR SINE MIR -102 106 4 233 224 20 0 chr1 106002714 106002763 -176190901 - L2 LINE L2 -1 3312 3263 303 71 0 0 chr1 106002848 106002890 -176190774 + (TG)n Simple_repeat Simple_repeat 1 42 0 231 189 74 95 chr1 106002974 106003069 -176190595 - MIR SINE MIR -12 250 158 211 348 45 0 chr1 106003748 106003837 -176189827 + L2 LINE L2 2826 2918 -354 544 75 0 12 chr1 106003838 106003918 -176189746 - MER53 DNA DNA 0 189 111 859 201 143 123 chr1 106003918 106004006 -176189658 + MLT1A1 LTR MaLR 1 86 -279 1783 148 5 119 chr1 106004006 106004383 -176189281 - MER1B DNA MER1_type 0 337 4 859 201 143 123 chr1 106004383 106004652 -176189012 + MLT1A1 LTR MaLR 86 365 0 236 180 66 33 chr1 106004652 106004710 -176188954 + MER53 DNA DNA 85 144 -45 836 280 86 9 chr1 106004770 106005109 -176188555 + L2 LINE L2 2949 3313 0 183 100 0 0 chr1 106005225 106005255 -176188409 + (GA)n Simple_repeat Simple_repeat 1 30 0 1007 274 81 48 chr1 106006703 106007184 -176186480 - L2 LINE L2 0 3313 2817 468 231 123 8 chr1 106007223 106007353 -176186311 - MER69A DNA AcHobo -14 163 19 362 183 0 33 chr1 106008097 106008217 -176185447 + CT-rich Low_complexity Low_complexity 1 116 0 737 202 24 65 chr1 106008412 106008628 -176185036 + L1MB7 LINE L1 5966 6162 -2 194 302 60 35 chr1 106008916 106009032 -176184632 - MER5A DNA MER1_type -22 167 49 22 35 0 0 chr1 106009034 106009063 -176184601 + AT_rich Low_complexity Low_complexity 1 29 0 1008 236 18 0 chr1 106009087 106009316 -176184348 - MIR SINE MIR -26 236 4 188 103 0 0 chr1 106010222 106010251 -176183413 - L2 LINE L2 -2 3311 3283 802 287 172 33 chr1 106010293 106011159 -176182505 + L2 LINE L2 2317 3312 -1 1634 255 170 20 chr1 106011313 106012156 -176181508 + L2 LINE L2 2107 3070 -243 251 269 11 86 chr1 106012139 106012232 -176181432 + L2 LINE L2 3184 3269 -3 * 295 287 130 9 chr1 106012822 106012930 -176180734 + MER91C DNA MER1_type 18 138 -2 2102 124 0 7 chr1 106013294 106013600 -176180064 + AluSg SINE Alu 1 304 -6 833 177 76 0 chr1 106013602 106013760 -176179904 + MLT1A1 LTR MaLR 149 318 -47 2534 214 95 23 chr1 106013783 106014479 -176179185 + L1ME3A LINE L1 5416 6161 -9 385 153 42 0 chr1 106014504 106014576 -176179088 + L1M4 LINE L1 4938 5012 -1134 2911 213 46 44 chr1 106014681 106015696 -176177968 + L1MEc LINE L1 2144 3156 -3059 1631 168 31 62 chr1 106015696 106016017 -176177647 + AluJo SINE Alu 1 311 -1 2911 213 46 44 chr1 106016017 106016059 -176177605 + L1MEc LINE L1 3156 3163 -3052 1111 59 5 43 chr1 106016059 106016245 -176177419 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2911 213 46 44 chr1 106016245 106016298 -176177366 + L1MEc LINE L1 3163 3214 -3001 582 120 0 0 chr1 106016300 106016375 -176177289 + AluS SINE Alu 3 77 -236 5907 139 30 4 chr1 106016384 106017359 -176176305 - Ricksha DNA DNA -6 3240 2241 7694 53 1 0 chr1 106017359 106018956 -176174708 - L1PA5 LINE L1 -1 6153 4558 1972 117 4 0 chr1 106018956 106019230 -176174434 - AluY SINE Alu -36 275 1 213 312 21 43 chr1 106020528 106020621 -176173043 - L3b LINE CR1 -316 1267 1177 2449 96 0 0 chr1 106021281 106021584 -176172080 + AluSg SINE Alu 1 303 -7 225 365 40 16 chr1 106021634 106021760 -176171904 + L2 LINE L2 3180 3308 -5 773 276 35 31 chr1 106022391 106022645 -176171019 - MIR SINE MIR 0 262 8 2567 63 0 3 chr1 106022954 106023257 -176170407 + AluY SINE Alu 1 302 -9 244 0 0 0 chr1 106023257 106023284 -176170380 + (TAA)n Simple_repeat Simple_repeat 2 180 0 26 0 0 0 chr1 106024489 106024515 -176169149 + AT_rich Low_complexity Low_complexity 1 26 0 1924 144 20 0 chr1 106024930 106025222 -176168442 + AluSx SINE Alu 12 309 -3 1269 241 0 4 chr1 106025361 106025635 -176168029 - MER82 DNA MER2_type -32 621 349 633 220 6 60 chr1 106025639 106025821 -176167843 + L1MA9 LINE L1 5936 6107 -205 31062 62 8 3 chr1 106025827 106030620 -176163044 + L1PA6 LINE L1 1338 6154 0 180 231 58 0 chr1 106030624 106030676 -176162988 + L2 LINE L2 2708 2762 -552 415 231 118 153 chr1 106030785 106031106 -176162558 + L2 LINE L2 3004 3313 0 452 293 80 0 chr1 106031198 106031348 -176162316 - MLT1L LTR MaLR -2 613 452 1676 257 89 67 chr1 106031399 106031982 -176161682 + MLT1F1 LTR MaLR 1 567 0 222 276 76 48 chr1 106033207 106033312 -176160352 + MIR SINE MIR 41 148 -60 22 35 0 0 chr1 106033515 106033544 -176160120 + AT_rich Low_complexity Low_complexity 1 29 0 394 262 0 41 chr1 106033570 106033692 -176159972 - MIR SINE MIR -8 254 138 472 264 334 13 chr1 106034424 106034723 -176158941 + MLT1K LTR MaLR 1 395 -193 390 208 0 50 chr1 106036100 106036201 -176157463 - L2 LINE L2 -1 3312 3217 21 0 0 0 chr1 106037208 106037229 -176156435 + AT_rich Low_complexity Low_complexity 1 21 0 391 299 80 35 chr1 106037925 106038126 -176155538 + MIR SINE MIR 53 262 0 2088 128 20 0 chr1 106038569 106038874 -176154790 + AluSx SINE Alu 1 311 -1 235 328 16 23 chr1 106038916 106039044 -176154620 + MIR SINE MIR 24 150 -58 276 183 99 14 chr1 106040848 106040919 -176152745 - L2 LINE L2 -28 3244 3168 1693 180 23 84 chr1 106041358 106041785 -176151879 + MER57A LTR ERV1 3 403 0 309 300 0 0 chr1 106041866 106041956 -176151708 + L1MC4 LINE L1 6614 6703 -1339 366 123 0 0 chr1 106041958 106042015 -176151649 + (CA)n Simple_repeat Simple_repeat 2 58 0 203 289 42 84 chr1 106043279 106043421 -176150243 + L2 LINE L2 3136 3271 -1 1053 105 0 0 chr1 106043425 106043587 -176150077 + (TGGA)n Simple_repeat Simple_repeat 1 162 0 467 315 30 6 chr1 106044876 106045041 -176148623 - L3 LINE CR1 -5 1572 1404 189 416 0 0 chr1 106045084 106045173 -176148491 + L2 LINE L2 3184 3272 0 437 265 7 29 chr1 106045183 106045319 -176148345 - L2 LINE L2 0 3313 3181 316 263 125 0 chr1 106045670 106045830 -176147834 + L1ME4a LINE L1 5939 6118 -3 300 27 0 0 chr1 106045839 106045876 -176147788 + (CA)n Simple_repeat Simple_repeat 2 38 0 312 239 0 43 chr1 106046965 106047057 -176146607 - MER34 LTR ERV1 -20 522 435 1445 150 17 17 chr1 106047075 106047315 -176146349 - LTR32 LTR ERVL 0 471 232 431 192 0 0 chr1 106047331 106047409 -176146255 - LTR32 LTR ERVL -384 87 10 * 650 303 28 74 chr1 106047407 106047839 -176145825 - MER34 LTR ERV1 -130 412 1 220 348 4 10 chr1 106047839 106047968 -176145696 + MIR SINE MIR 30 157 -65 193 239 0 0 chr1 106048051 106048097 -176145567 - L2 LINE L2 -5 3308 3263 246 276 41 31 chr1 106048757 106048855 -176144809 + MIR SINE MIR 16 114 -148 199 239 22 0 chr1 106049082 106049128 -176144536 - L2 LINE L2 0 3313 3267 230 214 60 83 chr1 106049527 106049611 -176144053 + MER9 LTR ERVK 55 136 -375 443 316 20 20 chr1 106049750 106049902 -176143762 + L3 LINE CR1 1387 1538 -39 361 197 16 87 chr1 106051380 106051507 -176142157 + MIR SINE MIR 17 134 -74 554 302 89 51 chr1 106051507 106051979 -176141685 + L2 LINE L2 2174 2627 -645 2274 110 0 0 chr1 106051979 106052271 -176141393 - AluSx SINE Alu -15 297 6 554 302 89 51 chr1 106052271 106052848 -176140816 + L2 LINE L2 2627 3272 0 1833 140 20 128 chr1 106053617 106054023 -176139641 - MLT1A1 LTR MaLR -2 363 2 1754 179 46 46 chr1 106054365 106054755 -176138909 + MLT1B LTR MaLR 1 390 0 321 254 108 65 chr1 106055351 106055583 -176138081 - HAL1 LINE L1 0 2507 2266 355 263 12 53 chr1 106055633 106055804 -176137860 - HAL1b LINE L1 -439 909 746 839 244 161 33 chr1 106056443 106056927 -176136737 - HAL1 LINE L1 -863 1644 1099 312 314 19 19 chr1 106057825 106057930 -176135734 - MIR SINE MIR -73 135 31 666 216 0 61 chr1 106058081 106058262 -176135402 + MIR SINE MIR 45 214 -48 5343 125 39 4 chr1 106058505 106059347 -176134317 + L1PA16 LINE L1 5294 6165 -1 1078 119 59 64 chr1 106060368 106060587 -176133077 + MER20 DNA MER1_type 1 218 -1 184 172 0 0 chr1 106060983 106061012 -176132652 - L2 LINE L2 -35 3237 3209 21 0 0 0 chr1 106061026 106061047 -176132617 + AT_rich Low_complexity Low_complexity 1 21 0 271 286 11 18 chr1 106061116 106061238 -176132426 - MIR SINE MIR -78 130 12 244 122 20 20 chr1 106062236 106062285 -176131379 + MLT1K LTR MaLR 194 242 -346 4391 99 60 81 chr1 106062400 106063195 -176130469 - MER4E LTR ERV1 0 779 1 224 122 24 0 chr1 106063278 106063319 -176130345 + (CA)n Simple_repeat Simple_repeat 2 43 0 2321 86 0 7 chr1 106064173 106064465 -176129199 - AluSc SINE Alu -19 290 1 265 296 50 64 chr1 106064508 106064788 -176128876 + L2 LINE L2 2838 3113 -159 1797 139 24 14 chr1 106065542 106066016 -176127648 + AluJo SINE Alu 1 312 0 1101 139 18 6 chr1 106066692 106066830 -176126834 + AluSg/x SINE Alu 133 275 -35 1960 46 0 0 chr1 106066830 106067049 -176126615 + AluY SINE Alu 1 219 -92 1101 139 18 6 chr1 106067049 106067075 -176126589 + AluSg/x SINE Alu 275 299 -11 469 267 30 0 chr1 106067476 106067607 -176126057 - L2 LINE L2 0 3313 3179 2438 103 0 0 chr1 106068281 106068591 -176125073 + AluSq SINE Alu 1 310 -3 1031 237 190 19 chr1 106068764 106069195 -176124469 + LTR33 LTR ERVL 16 520 -1 243 337 77 20 chr1 106069303 106069499 -176124165 - MIR SINE MIR 0 262 56 485 275 88 6 chr1 106069769 106069929 -176123735 + MER63A DNA MER1_type 1 173 -37 674 223 78 16 chr1 106070104 106070266 -176123398 + MER33 DNA MER1_type 1 174 -150 1338 138 44 6 chr1 106070266 106070699 -176122965 + LTR54 LTR ERV1 1 510 0 685 141 67 0 chr1 106070699 106070848 -176122816 + MER33 DNA MER1_type 166 324 0 260 331 55 18 chr1 106071056 106071219 -176122445 - L2 LINE L2 -818 2496 2328 928 301 97 11 chr1 106071268 106072009 -176121655 + L2 LINE L2 2509 3313 0 624 306 27 9 chr1 106072014 106072233 -176121431 + MIR SINE MIR 1 223 -39 1029 209 74 70 chr1 106072330 106072671 -176120993 + MSTD LTR MaLR 11 347 -49 1010 143 14 0 chr1 106072671 106072850 -176120814 + AluJb SINE Alu 134 314 0 417 93 0 0 chr1 106072850 106072904 -176120760 + MSTD LTR MaLR 343 396 0 403 154 0 77 chr1 106073983 106074061 -176119603 + Tigger5 DNA MER2_type 3 74 -2249 251 245 19 0 chr1 106074062 106074115 -176119549 - Tigger5 DNA MER2_type -5 2318 2265 238 200 36 18 chr1 106074067 106074122 -176119542 + Tigger5 DNA MER2_type 2268 2323 0 * 302 286 5 41 chr1 106074146 106074294 -176119370 - L1ME3 LINE L1 -62 6108 5963 730 303 14 9 chr1 106074327 106074548 -176119116 + MIR SINE MIR 2 223 -39 252 250 110 30 chr1 106075179 106075279 -176118385 - L1ME4a LINE L1 -46 6075 5968 307 327 54 17 chr1 106075694 106075864 -176117800 + MER20B DNA MER1_type 30 202 -17 4434 83 0 0 chr1 106076809 106077363 -176116301 - MER41A LTR ERV1 0 554 1 5905 115 36 3 chr1 106077779 106078659 -176115005 + MER49 LTR ERV1 1 909 -14 1561 268 75 27 chr1 106078727 106079250 -176114414 - MLT1K LTR MaLR -27 561 14 2273 103 0 41 chr1 106079421 106079741 -176113923 + AluSg SINE Alu 1 307 -3 225 311 128 55 chr1 106079857 106080076 -176113588 + MIR SINE MIR 20 254 -8 301 336 0 14 chr1 106082130 106082273 -176111391 + GA-rich Low_complexity Low_complexity 1 141 0 434 217 52 17 chr1 106082351 106082466 -176111198 - L2 LINE L2 -23 3290 3172 1576 172 28 32 chr1 106082527 106082812 -176110852 + AluJo SINE Alu 22 305 -7 458 162 0 0 chr1 106082886 106082960 -176110704 - MER92C LTR ERV1 0 554 481 267 220 101 64 chr1 106083024 106083133 -176110531 - MER92C LTR ERV1 -385 169 57 529 288 102 19 chr1 106083318 106083533 -176110131 - MLT1J2 LTR MaLR -217 233 1 253 319 56 31 chr1 106083719 106083879 -176109785 + L2 LINE L2 3150 3313 0 2527 59 3 7 chr1 106084572 106084875 -176108789 + AluY SINE Alu 1 302 -9 289 333 9 0 chr1 106085440 106085548 -176108116 - MIR SINE MIR -1 261 153 221 303 11 0 chr1 106085710 106085799 -176107865 + L2 LINE L2 2519 2608 -706 310 279 19 10 chr1 106085807 106085911 -176107753 - MIR SINE MIR 0 262 158 494 264 69 0 chr1 106086015 106086159 -176107505 - MIR SINE MIR -107 155 2 873 286 74 49 chr1 106086170 106086849 -176106815 + L2 LINE L2 2615 3313 0 212 244 209 0 chr1 106086998 106087084 -176106580 - MIR SINE MIR -9 253 150 270 319 59 8 chr1 106088451 106088570 -176105094 - MIR SINE MIR -88 174 50 249 33 0 0 chr1 106089929 106089959 -176103705 + (TA)n Simple_repeat Simple_repeat 2 31 0 190 281 16 16 chr1 106090463 106090527 -176103137 + L2 LINE L2 3241 3304 -9 1739 264 51 31 chr1 106090944 106091246 -176102418 + MLT1J LTR MaLR 5 322 -189 2112 112 0 51 chr1 106091246 106091559 -176102105 + AluSc SINE Alu 1 297 -12 1739 264 51 31 chr1 106091559 106091745 -176101919 + MLT1J LTR MaLR 322 503 -8 1669 175 55 0 chr1 106091861 106092153 -176101511 + AluJb SINE Alu 4 311 -1 449 312 7 7 chr1 106092456 106092597 -176101067 - MIR SINE MIR -114 148 8 1941 168 3 0 chr1 106093104 106093413 -176100251 + AluSx SINE Alu 1 310 -2 1986 113 62 3 chr1 106094682 106094973 -176098691 + AluSx SINE Alu 1 308 -4 298 304 98 0 chr1 106095772 106095864 -176097800 - L2 LINE L2 -1 3271 3171 1946 99 9 65 chr1 106095871 106096194 -176097470 - MER1B DNA MER1_type 0 339 35 931 262 191 11 chr1 106096263 106096630 -176097034 - LTR16A LTR ERVL 0 450 18 312 315 73 19 chr1 106097147 106097342 -176096322 + MIR3 SINE MIR 4 208 -54 1649 176 4 4 chr1 106098552 106098825 -176094839 + AluJb SINE Alu 1 273 -39 252 0 0 0 chr1 106099057 106099085 -176094579 + (T)n Simple_repeat Simple_repeat 1 28 0 2137 106 7 7 chr1 106101003 106101321 -176092343 - AluSx SINE Alu 0 318 1 1358 161 4 47 chr1 106101394 106101649 -176092015 + AluJo SINE Alu 1 244 -68 688 261 144 25 chr1 106103038 106103398 -176090266 - L1ME3 LINE L1 0 6162 5760 24 0 0 0 chr1 106104715 106104739 -176088925 + AT_rich Low_complexity Low_complexity 1 24 0 657 234 51 0 chr1 106104898 106105073 -176088591 - MIR SINE MIR -75 187 4 291 309 31 56 chr1 106105827 106105989 -176087675 - MIR3 SINE MIR -5 203 46 248 317 0 0 chr1 106106501 106106583 -176087081 - MIR SINE MIR -98 110 29 2370 105 0 3 chr1 106106677 106106990 -176086674 + AluSx SINE Alu 1 312 0 1727 168 46 61 chr1 106107087 106107202 -176086462 + MLT1B LTR MaLR 3 118 -272 2348 102 0 10 chr1 106107202 106107507 -176086157 + AluSc SINE Alu 1 302 -7 1727 168 46 61 chr1 106107507 106107785 -176085879 + MLT1B LTR MaLR 118 390 0 5493 197 75 22 chr1 106108230 106109499 -176084165 + L1M4 LINE L1 -256 1079 -5201 22793 171 23 46 chr1 106109499 106112925 -176080739 + L1PA11 LINE L1 3 3506 -4106 2199 86 6 77 chr1 106112925 106113261 -176080403 + AluSp SINE Alu 1 312 -1 22793 171 23 46 chr1 106113261 106113689 -176079975 + L1PA11 LINE L1 3506 3942 -3670 2445 62 7 3 chr1 106113689 106113996 -176079668 + AluY SINE Alu 1 308 -3 22793 171 23 46 chr1 106113996 106116852 -176076812 + L1PA11 LINE L1 3942 7591 -21 2399 201 47 45 chr1 106116855 106117517 -176076147 + L1M4 LINE L1 1045 1707 -4677 3138 86 20 9 chr1 106117517 106117960 -176075704 + LTR7 LTR ERV1 1 448 -2 14231 126 11 37 chr1 106117962 106119254 -176074410 + HERVH LTR ERV1 1 1325 -6388 2387 93 0 0 chr1 106119254 106119554 -176074110 + AluY SINE Alu 1 300 -11 14231 126 11 37 chr1 106119554 106121167 -176072497 + HERVH LTR ERV1 1325 2995 -4718 963 126 7 7 chr1 106121146 106121297 -176072367 + HERVH LTR ERV1 3140 3290 -4423 * 9883 109 33 79 chr1 106121287 106123024 -176070640 + HERVH LTR ERV1 3492 5149 -2564 2807 110 14 14 chr1 106123041 106123478 -176070186 + HERVH LTR ERV1 7277 7713 0 2013 107 25 9 chr1 106123478 106123868 -176069796 + LTR7 LTR ERV1 1 443 -7 580 249 161 61 chr1 106123876 106124288 -176069376 + L1M4 LINE L1 1719 2213 -4171 210 228 0 18 chr1 106124443 106124500 -176069164 - L2 LINE L2 0 3272 3217 548 284 216 32 chr1 106124668 106125038 -176068626 - L2 LINE L2 -4 3309 2872 435 218 153 37 chr1 106125335 106125607 -176068057 - L2 LINE L2 -31 3282 2922 181 281 58 74 chr1 106125794 106125915 -176067749 - L3 LINE CR1 -916 661 543 684 318 63 7 chr1 106126232 106126518 -176067146 - L2 LINE L2 -2 3311 3010 200 111 28 0 chr1 106126524 106126560 -176067104 + A-rich Low_complexity Low_complexity 5 41 0 3346 139 52 8 chr1 106127520 106128025 -176065639 + MER1A DNA MER1_type 1 527 0 945 255 108 76 chr1 106128338 106129003 -176064661 - L2 LINE L2 -1 3312 2613 1242 169 39 99 chr1 106129148 106129239 -176064425 + MER33 DNA MER1_type 13 108 -2477 2474 60 7 10 chr1 106129239 106129540 -176064124 + AluY SINE Alu 1 300 -11 1242 169 39 99 chr1 106129540 106129780 -176063884 + MER33 DNA MER1_type 108 324 0 3224 50 8 5 chr1 106130791 106131174 -176062490 - L1PA6 LINE L1 -1 6153 5770 4934 110 34 6 chr1 106131193 106131900 -176061764 - L1PA16 LINE L1 0 6166 5440 266 125 42 0 chr1 106131913 106131961 -176061703 + L1P LINE L1 5356 5405 -751 204 40 0 0 chr1 106132506 106132531 -176061133 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 225 270 0 0 chr1 106132651 106132714 -176060950 + L1ME4a LINE L1 5942 6004 -117 40 0 0 0 chr1 106132806 106132846 -176060818 + AT_rich Low_complexity Low_complexity 1 40 0 1956 126 7 3 chr1 106133136 106133451 -176060213 + AluSq SINE Alu 1 316 0 343 280 38 45 chr1 106133882 106134039 -176059625 - MIR SINE MIR -71 191 36 674 262 75 21 chr1 106134533 106134993 -176058671 - LTR33A LTR ERVL 0 523 3 270 276 58 0 chr1 106135568 106135655 -176058009 - L2 LINE L2 -1 3312 3221 626 282 10 34 chr1 106137903 106138112 -176055552 + MIR SINE MIR 15 218 -44 252 0 0 0 chr1 106139961 106139989 -176053675 + (CA)n Simple_repeat Simple_repeat 2 29 0 735 275 58 10 chr1 106140983 106141190 -176052474 + MIR SINE MIR 8 224 -38 193 273 30 15 chr1 106141482 106141548 -176052116 - L2 LINE L2 -72 3200 3134 2441 157 23 5 chr1 106141574 106141968 -176051696 + Tigger1 DNA MER2_type 2018 2418 0 1794 200 46 3 chr1 106142061 106142411 -176051253 + MLT1A1 LTR MaLR 1 365 0 301 267 67 19 chr1 106142525 106142630 -176051034 - L2 LINE L2 -22 3250 3141 1455 171 104 46 chr1 106142932 106143277 -176050387 - MLT1A1 LTR MaLR 0 365 1 2151 105 10 7 chr1 106144006 106144312 -176049352 + AluSp SINE Alu 2 308 -5 335 263 95 0 chr1 106144346 106144441 -176049223 + L2 LINE L2 3210 3313 0 189 268 134 0 chr1 106145671 106145753 -176047911 - L2 LINE L2 0 3313 3221 210 259 171 47 chr1 106146185 106146355 -176047309 + MIR3 SINE MIR 15 205 -3 250 206 14 27 chr1 106148455 106148528 -176045136 + G-rich Low_complexity Low_complexity 3 74 0 339 315 25 0 chr1 106151605 106151727 -176041937 - MIR SINE MIR -64 144 11 528 293 78 16 chr1 106153293 106153484 -176040180 + MIR SINE MIR 60 262 0 442 279 127 24 chr1 106153707 106153872 -176039792 + MIR SINE MIR 7 188 -74 538 174 245 0 chr1 106153897 106153995 -176039669 + FLAM_C SINE Alu 2 123 -20 731 156 213 0 chr1 106155745 106155905 -176037759 + MER33 DNA MER1_type 6 199 -125 2109 101 79 137 chr1 106155906 106156159 -176037505 - Tigger2 DNA MER2_type 0 2718 2503 2242 121 0 9 chr1 106156159 106156474 -176037190 + AluSx SINE Alu 1 312 0 2109 101 79 137 chr1 106156474 106156686 -176036978 - Tigger2 DNA MER2_type -215 2503 2280 468 159 0 0 chr1 106156684 106156753 -176036911 - Tigger2 DNA MER2_type -2649 69 1 * 755 120 8 8 chr1 106156755 106156880 -176036784 + MER33 DNA MER1_type 238 362 -1 188 272 128 72 chr1 106157339 106157519 -176036145 + MIR3 SINE MIR 2 191 -17 239 289 0 0 chr1 106158244 106158296 -176035368 - L2 LINE L2 -20 3252 3201 2179 138 0 0 chr1 106158724 106159035 -176034629 + AluSx SINE Alu 2 312 0 2290 102 3 3 chr1 106160226 106160529 -176033135 - AluSx SINE Alu -9 303 1 21 36 0 0 chr1 106160959 106160987 -176032677 + AT_rich Low_complexity Low_complexity 1 28 0 381 274 80 111 chr1 106161067 106161355 -176032309 - MLT1I LTR MaLR -26 383 105 2033 118 45 0 chr1 106162879 106163166 -176030498 - AluSx SINE Alu -12 300 1 458 328 85 24 chr1 106163526 106163773 -176029891 + MLT1K LTR MaLR 154 415 -173 243 287 11 21 chr1 106163799 106163893 -176029771 - L1MDb LINE L1 -5252 1157 1065 342 329 63 0 chr1 106163894 106164052 -176029612 + MLT1L LTR MaLR 439 606 -9 254 316 44 18 chr1 106164139 106164253 -176029411 + L2 LINE L2 1565 1681 -1633 1616 278 65 55 chr1 106164253 106164987 -176028677 + L2 LINE L2 1981 2722 -592 1035 258 59 19 chr1 106165046 106165317 -176028347 + MLT2E LTR ERVL 19 300 -328 1887 127 22 54 chr1 106166136 106166451 -176027213 - AluSx SINE Alu -7 305 1 21 36 0 0 chr1 106166761 106166789 -176026875 + AT_rich Low_complexity Low_complexity 1 28 0 851 193 133 18 chr1 106166936 106167102 -176026562 + MER5A DNA MER1_type 5 189 0 311 173 83 5 chr1 106167311 106167386 -176026278 - MLT1K LTR MaLR 0 615 517 491 222 257 0 chr1 106168062 106168206 -176025458 + MER5A DNA MER1_type 9 189 0 268 294 190 71 chr1 106168714 106168983 -176024681 - L2 LINE L2 -22 3250 2950 668 212 103 0 chr1 106169370 106169554 -176024110 - L1M4 LINE L1 -3614 2532 2330 963 228 210 21 chr1 106169570 106170004 -176023660 + L1ME3A LINE L1 5258 5773 -397 383 233 0 12 chr1 106170019 106170105 -176023559 - Tigger5 DNA MER2_type -1 2322 2238 260 193 0 35 chr1 106170116 106170173 -176023491 - Tigger5 DNA MER2_type -2268 55 1 718 221 181 40 chr1 106170173 106170449 -176023215 + L1ME3A LINE L1 5792 6106 -64 393 226 66 9 chr1 106170541 106170647 -176023017 + HAL1 LINE L1 2285 2396 -111 231 234 109 0 chr1 106171234 106171298 -176022366 + MER103 DNA DNA 49 119 -47 459 183 0 25 chr1 106174394 106174514 -176019150 + GA-rich Low_complexity Low_complexity 4 120 0 673 311 142 0 chr1 106175558 106175854 -176017810 - MER46C DNA MER2_type 0 338 1 981 150 44 84 chr1 106175914 106176140 -176017524 + MER20 DNA MER1_type 1 217 -2 496 250 250 0 chr1 106177240 106177384 -176016280 - MER5A DNA MER1_type 0 189 10 36305 33 2 1 chr1 106178086 106183329 -176010335 + L1PA3 LINE L1 905 6151 -4 22 70 0 0 chr1 106183329 106183372 -176010292 + AT_rich Low_complexity Low_complexity 1 43 0 261 310 74 34 chr1 106184191 106184415 -176009249 - L1MC/D LINE L1 -564 5557 5322 1107 302 66 80 chr1 106184452 106184809 -176008855 + L2 LINE L2 1902 2262 -1052 1407 184 10 52 chr1 106184809 106185114 -176008550 + AluJo SINE Alu 1 292 -20 1107 302 66 80 chr1 106185114 106185735 -176007929 + L2 LINE L2 2262 2867 -447 1720 140 7 45 chr1 106185928 106186112 -176007552 + AluSx SINE Alu 24 195 -117 2314 114 0 0 chr1 106186112 106186419 -176007245 + AluSg SINE Alu 1 307 -3 1720 140 7 45 chr1 106186419 106186520 -176007144 + AluSx SINE Alu 195 298 -14 1564 118 9 0 chr1 106187152 106187380 -176006284 + MER30 DNA MER1_type 1 230 0 572 299 15 78 chr1 106187382 106187527 -176006137 + MIR SINE MIR 9 131 -131 2188 104 0 10 chr1 106187527 106187825 -176005839 + AluSx SINE Alu 5 299 -13 572 299 15 78 chr1 106187825 106187950 -176005714 + MIR SINE MIR 131 262 0 866 130 0 0 chr1 106189038 106189169 -176004495 - AluSg/x SINE Alu -6 306 176 1137 165 31 22 chr1 106189858 106190082 -176003582 - AluJo SINE Alu -6 306 81 1422 179 51 26 chr1 106191952 106192225 -176001439 + AluJo SINE Alu 2 281 -31 647 294 33 42 chr1 106192345 106192678 -176000986 - L1MC4a LINE L1 -1876 5932 5603 641 273 55 146 chr1 106192952 106193340 -176000324 - L2 LINE L2 -5 3308 2982 1665 94 0 0 chr1 106193340 106193553 -176000111 + AluSg/x SINE Alu 84 296 -14 641 273 55 146 chr1 106193553 106193769 -175999895 - L2 LINE L2 -331 2982 2748 2444 140 52 5 chr1 106193770 106193844 -175999820 + L1MB4 LINE L1 5705 5774 -406 243 0 0 0 chr1 106193844 106193871 -175999793 + (CA)n Simple_repeat Simple_repeat 2 28 0 2444 140 52 5 chr1 106193871 106194238 -175999426 + L1MB4 LINE L1 5774 6167 -13 1377 185 16 8 chr1 106195236 106195490 -175998174 - AluJb SINE Alu -24 288 33 7637 18 11 5 chr1 106196218 106197340 -175996324 - L1PA3 LINE L1 -3 6152 5030 986 184 45 5 chr1 106198144 106198345 -175995319 - MER3 DNA MER1_type 0 209 1 5172 148 28 44 chr1 106199173 106200224 -175993440 + L1MA9 LINE L1 5263 6296 -16 630 173 83 8 chr1 106201267 106201400 -175992264 + L1MA10 LINE L1 6179 6321 -13 216 67 0 0 chr1 106201474 106201504 -175992160 + (GA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr1 106202284 106202309 -175991355 + AT_rich Low_complexity Low_complexity 1 25 0 245 158 0 0 chr1 106202864 106202902 -175990762 - L2 LINE L2 -1 3271 3234 924 328 91 14 chr1 106203402 106203841 -175989823 + L2 LINE L2 2804 3276 -37 746 285 69 33 chr1 106203836 106203983 -175989681 - L2 LINE L2 -16 3297 3157 * 1644 113 57 85 chr1 106203983 106204126 -175989538 + MER2 DNA MER2_type 1 147 -197 2161 98 0 0 chr1 106204126 106204413 -175989251 - AluSx SINE Alu -25 287 1 1644 113 57 85 chr1 106204413 106204623 -175989041 + MER2 DNA MER2_type 147 344 0 746 285 69 33 chr1 106204623 106204780 -175988884 - L2 LINE L2 -156 3157 2982 375 293 49 16 chr1 106204969 106205092 -175988572 + L2 LINE L2 3185 3311 -2 998 237 37 19 chr1 106205194 106205409 -175988255 + MER58A DNA MER1_type 6 224 0 6906 56 7 0 chr1 106205521 106206824 -175986840 - L1PA5 LINE L1 0 6154 4847 216 67 0 0 chr1 106206980 106207010 -175986654 + (TG)n Simple_repeat Simple_repeat 2 31 0 276 374 61 0 chr1 106207749 106207864 -175985800 - MIR SINE MIR -121 141 20 775 279 132 52 chr1 106208316 106208869 -175984795 + MLT1L LTR MaLR 9 605 -10 484 307 127 28 chr1 106209070 106209282 -175984382 - MIR SINE MIR -10 252 20 220 400 170 15 chr1 106210673 106210873 -175982791 + L2 LINE L2 3017 3247 -25 856 120 8 8 chr1 106211621 106211754 -175981910 - FLAM_C SINE Alu 0 133 1 1299 125 217 0 chr1 106212737 106212977 -175980687 - AluJb SINE Alu -10 292 1 243 0 0 0 chr1 106213067 106213094 -175980570 + (T)n Simple_repeat Simple_repeat 1 27 0 180 176 0 0 chr1 106213380 106213414 -175980250 + (CATA)n Simple_repeat Simple_repeat 1 34 0 207 69 0 0 chr1 106213415 106213444 -175980220 + (GA)n Simple_repeat Simple_repeat 2 30 0 25 31 0 0 chr1 106214405 106214437 -175979227 + AT_rich Low_complexity Low_complexity 1 32 0 269 275 214 8 chr1 106214801 106214932 -175978732 - MIR3 SINE MIR -4 204 47 27 0 0 0 chr1 106215041 106215068 -175978596 + AT_rich Low_complexity Low_complexity 1 27 0 389 204 102 0 chr1 106216105 106216193 -175977471 + MER20 DNA MER1_type 41 137 -82 776 201 128 17 chr1 106216998 106217177 -175976487 - MER58A DNA MER1_type -19 205 7 24 32 0 0 chr1 106217302 106217333 -175976331 + AT_rich Low_complexity Low_complexity 1 31 0 487 227 23 16 chr1 106217615 106217743 -175975921 + MER103 DNA DNA 15 143 -23 1233 201 5 0 chr1 106218837 106219046 -175974618 - AluJo SINE Alu -102 210 1 26 30 0 0 chr1 106219141 106219174 -175974490 + AT_rich Low_complexity Low_complexity 1 33 0 1158 246 207 12 chr1 106219219 106219783 -175973881 + HAL1 LINE L1 745 1418 -1089 546 178 0 40 chr1 106219943 106220044 -175973620 + MER5B DNA MER1_type 79 175 -3 1936 267 50 66 chr1 106220045 106220386 -175973278 + HAL1 LINE L1 1536 1881 -626 2115 85 0 0 chr1 106220386 106220658 -175973006 + AluY SINE Alu 30 301 -10 1936 267 50 66 chr1 106220658 106221290 -175972374 + HAL1 LINE L1 1881 2494 -13 364 347 35 35 chr1 106222014 106222184 -175971480 + L2 LINE L2 3102 3271 -1 321 342 71 26 chr1 106222574 106222729 -175970935 - MIR3 SINE MIR -15 193 32 185 141 0 169 chr1 106222886 106222957 -175970707 - L2 LINE L2 -93 3220 3162 260 155 17 35 chr1 106224177 106224235 -175969429 + L1ME4a LINE L1 6064 6120 -1 2045 153 97 3 chr1 106225029 106225420 -175968244 + MSTA LTR MaLR 1 428 0 445 331 43 36 chr1 106225710 106225966 -175967698 - L2 LINE L2 -271 3042 2789 425 334 145 26 chr1 106226115 106226539 -175967125 - L2 LINE L2 -81 3232 2753 209 121 30 0 chr1 106226932 106226965 -175966699 - MIR SINE MIR -28 234 201 184 284 126 11 chr1 106227206 106227301 -175966363 - L2 LINE L2 0 3313 3208 26 0 0 0 chr1 106228107 106228133 -175965531 + AT_rich Low_complexity Low_complexity 1 26 0 313 296 115 49 chr1 106228379 106228666 -175964998 + L1MC/D LINE L1 5515 5820 -1988 1088 332 118 52 chr1 106229466 106230163 -175963501 + L3 LINE CR1 122 915 -662 3124 141 32 11 chr1 106230163 106230718 -175962946 + L1MB7 LINE L1 5610 6176 -8 1088 332 118 52 chr1 106230718 106231091 -175962573 + L3 LINE CR1 915 1262 -315 846 189 11 54 chr1 106231112 106231297 -175962367 + FRAM SINE Alu 1 176 0 394 138 11 23 chr1 106231297 106231384 -175962280 + G-rich Low_complexity Low_complexity 4 89 0 220 323 86 32 chr1 106231512 106231605 -175962059 + L3 LINE CR1 1478 1575 -2 376 250 114 38 chr1 106232000 106232184 -175961480 + MLT1H LTR MaLR 100 297 -252 261 233 33 0 chr1 106232184 106232244 -175961420 - MIR SINE MIR -113 149 88 424 278 64 58 chr1 106232484 106232830 -175960834 - LTR16A LTR ERVL -78 372 25 4975 107 21 17 chr1 106233122 106233743 -175959921 + L1MA9 LINE L1 5193 5934 -378 1999 146 0 9 chr1 106233743 106234058 -175959606 + AluSx SINE Alu 1 312 0 4975 107 21 17 chr1 106234058 106234368 -175959296 + L1MA9 LINE L1 5934 6241 -71 2341 104 3 0 chr1 106234697 106234995 -175958669 + AluSp SINE Alu 2 300 -13 25 0 0 0 chr1 106235302 106235327 -175958337 + AT_rich Low_complexity Low_complexity 1 25 0 2197 135 0 0 chr1 106235369 106235666 -175957998 + AluSx SINE Alu 1 297 -15 286 317 164 73 chr1 106235805 106236202 -175957462 + L2 LINE L2 2244 2676 -638 271 281 0 22 chr1 106236211 106236300 -175957364 + (CATATA)n Simple_repeat Simple_repeat 1 87 0 469 284 207 22 chr1 106236302 106236703 -175956961 + L1M4 LINE L1 2951 3425 -2721 2529 47 7 0 chr1 106236703 106237003 -175956661 + AluY SINE Alu 1 302 -9 1966 118 0 4 chr1 106237310 106237607 -175956057 + AluSx SINE Alu 28 312 0 24 67 0 0 chr1 106237710 106237755 -175955909 + AT_rich Low_complexity Low_complexity 1 45 0 287 318 11 0 chr1 106237769 106237857 -175955807 + L2 LINE L2 2764 2852 -462 324 171 40 13 chr1 106237893 106237969 -175955695 + MER116 DNA Mariner 3 80 0 516 216 18 0 chr1 106238114 106238225 -175955439 - MER94 DNA DNA -20 114 2 203 333 114 57 chr1 106238525 106238735 -175954929 - L2 LINE L2 -872 2442 2221 367 359 87 15 chr1 106238852 106239117 -175954547 + L1MEd LINE L1 541 824 -5295 3404 78 60 8 chr1 106239531 106240017 -175953647 - MER9 LTR ERVK 0 511 1 8965 97 5 5 chr1 106240017 106241662 -175952002 - HERVK9 LTR ERVK 0 8048 4369 * 21490 79 14 3 chr1 106241660 106244623 -175949041 - HERVK9 LTR ERVK -1997 3919 927 2360 86 64 34 chr1 106244611 106245019 -175948645 - HERVK9 LTR ERVK -5496 420 1 * 2972 119 8 10 chr1 106245019 106245498 -175948166 - MER9 LTR ERVK 0 511 34 279 168 21 182 chr1 106245658 106245801 -175947863 + L1M4 LINE L1 2914 3033 -3113 26 0 0 0 chr1 106245827 106245853 -175947811 + AT_rich Low_complexity Low_complexity 1 26 0 715 181 47 0 chr1 106245853 106245965 -175947699 + AluJo/FLAM SINE Alu 1 121 -191 2262 113 0 3 chr1 106245965 106246266 -175947398 - AluSc SINE Alu -9 300 1 715 181 47 0 chr1 106246266 106246280 -175947384 + AluJo/FLAM SINE Alu 121 133 -179 385 224 140 21 chr1 106246283 106246426 -175947238 + L1M4 LINE L1 3134 3293 -2853 5411 133 28 23 chr1 106246492 106247831 -175945833 + L1PB4 LINE L1 4807 6143 -13 23 0 0 0 chr1 106247857 106247880 -175945784 + AT_rich Low_complexity Low_complexity 1 23 0 1125 202 87 7 chr1 106248084 106248417 -175945247 - L1MD3 LINE L1 0 8042 7696 2125 243 84 12 chr1 106248431 106249317 -175944347 - L1MC4a LINE L1 -863 5283 5024 926 203 0 0 chr1 106250285 106250443 -175943221 + FAM SINE Alu 1 158 -17 209 229 0 52 chr1 106250537 106250633 -175943031 + A-rich Low_complexity Low_complexity 1 91 0 1899 135 46 0 chr1 106250677 106250958 -175942706 - AluSx SINE Alu -18 294 1 599 289 94 11 chr1 106250978 106251338 -175942326 + HAL1b LINE L1 346 735 -613 10518 120 47 17 chr1 106251374 106251974 -175941690 - Tigger1 DNA MER2_type -8 2410 1829 483 18 0 0 chr1 106251974 106252030 -175941634 + (TG)n Simple_repeat Simple_repeat 1 56 0 2181 87 4 4 chr1 106252030 106252306 -175941358 - AluSc SINE Alu -33 276 1 10518 120 47 17 chr1 106252306 106253525 -175940139 - Tigger1 DNA MER2_type -588 1830 536 1632 129 8 0 chr1 106253528 106253792 -175939872 - Tigger1 DNA MER2_type -2151 267 2 2047 218 52 93 chr1 106254123 106254775 -175938889 + L1MC5 LINE L1 6633 7239 -722 1642 171 36 11 chr1 106254775 106255056 -175938608 - AluJb SINE Alu -24 288 1 2047 218 52 93 chr1 106255056 106255320 -175938344 + L1MC5 LINE L1 7239 7512 -449 504 216 39 67 chr1 106255419 106255627 -175938037 + L1ME3A LINE L1 5963 6164 -6 2427 143 85 0 chr1 106255664 106256111 -175937553 + Tigger3b DNA MER2_type 1 485 -746 2592 111 32 49 chr1 106256132 106256365 -175937299 + Tigger3b DNA MER2_type 772 1007 -2021 1790 163 0 28 chr1 106256365 106256685 -175936979 + AluSx SINE Alu 1 311 -1 2592 111 32 49 chr1 106256685 106256860 -175936804 + Tigger3b DNA MER2_type 1007 1183 -1845 2165 111 3 0 chr1 106256860 106257158 -175936506 + AluSq SINE Alu 1 299 -14 2383 89 0 10 chr1 106257158 106257462 -175936202 + AluSg SINE Alu 1 301 -9 2592 111 32 49 chr1 106257462 106257518 -175936146 + Tigger3b DNA MER2_type 1181 1230 -1 397 262 115 8 chr1 106257720 106257842 -175935822 + MIR SINE MIR 125 259 -3 249 270 100 30 chr1 106257853 106257953 -175935711 + L2 LINE L2 2871 2977 -295 1150 157 17 0 chr1 106258560 106258738 -175934926 + AluJb SINE Alu 107 287 -25 21 0 0 0 chr1 106258751 106258772 -175934892 + AT_rich Low_complexity Low_complexity 1 21 0 206 359 58 29 chr1 106258837 106258940 -175934724 + L2 LINE L2 3141 3246 -26 370 69 10 186 chr1 106259265 106259367 -175934297 - HsTC2 DNA Tc2 -1813 85 2 24 53 0 0 chr1 106259461 106259499 -175934165 + AT_rich Low_complexity Low_complexity 1 38 0 2182 104 61 17 chr1 106259579 106259924 -175933740 - THE1B LTR MaLR -4 360 1 11872 87 12 0 chr1 106259924 106261485 -175932179 - THE1B-int LTR MaLR 0 1580 1 1651 109 78 21 chr1 106261485 106261769 -175931895 - THE1B LTR MaLR 0 364 65 255 31 0 0 chr1 106262214 106262246 -175931418 + (A)n Simple_repeat Simple_repeat 1 32 0 588 222 8 17 chr1 106262540 106262657 -175931007 + AluSq/x SINE Alu 1 116 -197 255 367 51 32 chr1 106262786 106262944 -175930720 + L3 LINE CR1 227 387 -1190 225 305 64 28 chr1 106263252 106263393 -175930271 + L3 LINE CR1 575 720 -857 198 0 0 0 chr1 106263444 106263466 -175930198 + (A)n Simple_repeat Simple_repeat 1 22 0 2239 104 0 7 chr1 106263470 106263767 -175929897 + AluSx SINE Alu 1 295 -17 200 332 101 35 chr1 106263882 106264081 -175929583 + L3 LINE CR1 969 1180 -397 190 211 0 0 chr1 106264089 106264127 -175929537 + L3 LINE CR1 1540 1577 0 475 259 148 37 chr1 106264262 106264478 -175929186 - MIR SINE MIR -20 242 3 588 291 149 60 chr1 106264486 106265125 -175928539 + L1ME4a LINE L1 5361 6056 -65 1023 238 80 75 chr1 106265355 106265598 -175928066 - L2 LINE L2 -12 3301 3054 1832 172 20 0 chr1 106265598 106265900 -175927764 + AluJo SINE Alu 1 308 -4 1023 238 80 75 chr1 106265900 106266043 -175927621 - L2 LINE L2 -259 3054 2913 492 399 18 11 chr1 106267071 106267354 -175926310 - L2 LINE L2 -198 3074 2791 207 300 32 146 chr1 106267696 106267809 -175925855 - L2 LINE L2 -81 3191 3113 2091 125 43 15 chr1 106267809 106268137 -175925527 - MER1B DNA MER1_type 0 337 1 207 300 32 146 chr1 106268137 106268243 -175925421 - L2 LINE L2 -159 3113 2997 249 147 6 6 chr1 106268248 106268304 -175925360 + Alu SINE Alu 2 39 -269 261 0 0 0 chr1 106268723 106268752 -175924912 + (CA)n Simple_repeat Simple_repeat 2 30 0 407 249 86 34 chr1 106268871 106269080 -175924584 + L1ME2 LINE L1 5935 6154 -10 636 174 105 32 chr1 106269998 106270188 -175923476 + L1ME3A LINE L1 5949 6152 -18 3265 91 0 0 chr1 106271407 106271860 -175921804 + THE1-int LTR MaLR 815 1267 -313 459 232 61 0 chr1 106272210 106272309 -175921355 - L2 LINE L2 -2 3270 3166 336 331 29 22 chr1 106272736 106272875 -175920789 - MIR3 SINE MIR -56 152 13 207 0 0 0 chr1 106274617 106274640 -175919024 + (CGG)n Simple_repeat Simple_repeat 3 25 0 29 70 0 0 chr1 106274684 106274741 -175918923 + GC_rich Low_complexity Low_complexity 1 57 0 544 224 98 53 chr1 106275205 106275450 -175918214 - MER112 DNA MER1_type 0 256 1 3280 120 59 30 chr1 106275926 106276534 -175917130 - MER39B LTR ERV1 -26 627 2 182 330 23 57 chr1 106276741 106276829 -175916835 - L2 LINE L2 -219 3053 2969 1647 229 69 25 chr1 106277094 106277570 -175916094 - LTR65 LTR ERV1 -6 663 167 1995 208 114 4 chr1 106277767 106278239 -175915425 + MLT1F LTR MaLR 1 524 -18 273 370 87 21 chr1 106278264 106278642 -175915022 - L2 LINE L2 -337 2977 2575 21 0 0 0 chr1 106279968 106279989 -175913675 + AT_rich Low_complexity Low_complexity 1 21 0 1022 268 138 22 chr1 106280099 106280723 -175912941 + L1MC4a LINE L1 5272 5967 -1841 4397 147 40 42 chr1 106280889 106282168 -175911496 - L1MB5 LINE L1 0 6174 4903 21 0 0 0 chr1 106282889 106282910 -175910754 + AT_rich Low_complexity Low_complexity 1 21 0 1850 109 36 3 chr1 106283687 106283990 -175909674 - L1MA3 LINE L1 0 6305 5993 331 348 44 25 chr1 106284180 106284384 -175909280 + L2 LINE L2 2636 2843 -471 2081 117 0 36 chr1 106284445 106284752 -175908912 - AluSx SINE Alu -8 304 9 1650 198 0 18 chr1 106284998 106285326 -175908338 - MER58B DNA MER1_type -15 326 5 662 284 24 10 chr1 106285479 106285635 -175908029 + L1MC4 LINE L1 4367 4519 -1627 2187 93 4 0 chr1 106285635 106285915 -175907749 + AluSp SINE Alu 25 305 -8 662 284 24 10 chr1 106285915 106286004 -175907660 + L1MC4 LINE L1 4519 4619 -1527 234 0 0 0 chr1 106286004 106286030 -175907634 + (TTG)n Simple_repeat Simple_repeat 2 27 0 662 284 24 10 chr1 106286030 106286072 -175907592 + L1MC4 LINE L1 4619 4659 -1487 1201 257 64 45 chr1 106286845 106287585 -175906079 + L1MC4 LINE L1 4734 5073 -1073 2182 88 25 0 chr1 106287585 106287870 -175905794 + AluSp SINE Alu 9 300 -13 1201 257 64 45 chr1 106287870 106288207 -175905457 + L1MC4 LINE L1 5073 5402 -744 652 108 10 0 chr1 106288213 106288315 -175905349 - AluSg/x SINE Alu 0 312 210 3491 249 57 99 chr1 106288315 106290028 -175903636 + L1MC4 LINE L1 5817 7459 -536 3008 17 0 8 chr1 106290028 106290380 -175903284 + L1PA2 LINE L1 5807 6155 0 3491 249 57 99 chr1 106290380 106290896 -175902768 + L1MC4 LINE L1 7459 7995 0 1665 221 39 11 chr1 106290907 106291364 -175902300 + L1ME2 LINE L1 5679 6148 -16 1993 141 105 15 chr1 106291990 106292381 -175901283 - MSTC LTR MaLR -2 426 1 1987 125 17 3 chr1 106292747 106293044 -175900620 - AluSx SINE Alu -1 311 11 492 178 109 0 chr1 106293137 106293238 -175900426 - FRAM SINE Alu -27 149 38 392 279 169 37 chr1 106293552 106293687 -175899977 + MIR SINE MIR 16 165 -58 338 248 29 15 chr1 106293974 106294133 -175899531 + L1MD3 LINE L1 5972 6159 -49 1084 212 66 88 chr1 106294208 106294235 -175899429 + L1MC4a LINE L1 6156 6182 -1626 2095 121 0 29 chr1 106294235 106294548 -175899116 - AluSg SINE Alu -6 304 1 1084 212 66 88 chr1 106294548 106294977 -175898687 + L1MC4a LINE L1 6182 6589 -1219 2889 151 135 144 chr1 106295001 106295353 -175898311 + L1MD3 LINE L1 6927 7280 -715 540 240 0 0 chr1 106295353 106295478 -175898186 + MLT1F1 LTR MaLR 1 125 -442 2889 151 135 144 chr1 106295478 106296079 -175897585 + L1MD3 LINE L1 7280 7995 0 21 36 0 0 chr1 106296187 106296215 -175897449 + AT_rich Low_complexity Low_complexity 1 28 0 264 167 0 0 chr1 106296545 106296593 -175897071 + (CA)n Simple_repeat Simple_repeat 2 49 0 744 238 32 22 chr1 106296878 106297063 -175896601 - MIR SINE MIR -62 200 14 266 172 21 0 chr1 106297251 106297344 -175896320 + (TCTG)n Simple_repeat Simple_repeat 2 96 0 186 143 0 0 chr1 106297344 106297379 -175896285 + (CA)n Simple_repeat Simple_repeat 1 35 0 296 48 0 0 chr1 106297439 106297481 -175896183 + MADE1 DNA Mariner 35 76 -4 1158 283 110 17 chr1 106297484 106297947 -175895717 + LTR33 LTR ERVL 14 519 -2 304 137 0 0 chr1 106298332 106298383 -175895281 - tRNA-Phe-TTC tRNA tRNA -25 51 1 1676 301 60 8 chr1 106298726 106299380 -175894284 + HERV16 LTR ERVL 2545 3232 -2532 2266 132 0 0 chr1 106299516 106299827 -175893837 - AluSx SINE Alu -1 311 1 204 169 0 56 chr1 106299854 106299925 -175893739 + CT-rich Low_complexity Low_complexity 3 69 0 192 294 20 20 chr1 106299926 106299977 -175893687 - L2 LINE L2 -12 3301 3251 2292 99 17 0 chr1 106300050 106300352 -175893312 - AluSc SINE Alu -2 307 1 849 295 28 14 chr1 106300697 106300982 -175892682 - MLT1I LTR MaLR -9 400 112 2256 92 3 30 chr1 106301071 106301409 -175892255 + MER51A LTR ERV1 2 330 -304 359 374 62 14 chr1 106301414 106301767 -175891897 + HERV16 LTR ERVL 1135 1504 -3492 1542 107 22 22 chr1 106301933 106302205 -175891459 - L1MB7 LINE L1 -303 5881 5610 1964 311 65 40 chr1 106302408 106302991 -175890673 + HERV16 LTR ERVL 1726 2350 -2646 2095 147 0 0 chr1 106302991 106303303 -175890361 + AluSx SINE Alu 1 312 0 1964 311 65 40 chr1 106303303 106303778 -175889886 + HERV16 LTR ERVL 2350 2811 -2185 3501 106 10 4 chr1 106303834 106304342 -175889322 - MER9 LTR ERVK 0 511 1 346 378 17 21 chr1 106304591 106304832 -175888832 + LTR16C LTR ERVL 200 439 -52 325 356 32 36 chr1 106304963 106305216 -175888448 + MLT1K LTR MaLR 173 424 -164 257 269 0 15 chr1 106305572 106305639 -175888025 + MIR SINE MIR 67 132 -130 322 179 13 26 chr1 106305640 106305718 -175887946 - LTR33A LTR ERVL 0 523 447 918 129 0 7 chr1 106306709 106306848 -175886816 - AluSg/x SINE Alu -1 311 174 231 36 0 0 chr1 106307513 106307541 -175886123 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 743 287 53 20 chr1 106309032 106309279 -175884385 - MIR SINE MIR -1 261 7 201 256 0 0 chr1 106309560 106309599 -175884065 - MIR SINE MIR -20 242 204 1710 158 53 19 chr1 106309611 106309971 -175883693 - L1MB3 LINE L1 -1 6182 5811 378 229 246 28 chr1 106310111 106310142 -175883522 - MIR SINE MIR -44 218 195 2217 123 0 3 chr1 106310142 106310452 -175883212 + AluSc SINE Alu 1 309 0 378 229 246 28 chr1 106310452 106310599 -175883065 - MIR SINE MIR -67 195 1 378 0 0 0 chr1 106310601 106310643 -175883021 + (TA)n Simple_repeat Simple_repeat 2 43 0 198 0 0 0 chr1 106310793 106310815 -175882849 + (TA)n Simple_repeat Simple_repeat 2 23 0 2276 101 0 13 chr1 106310815 106311123 -175882541 - AluSg SINE Alu -6 304 1 2026 106 77 131 chr1 106311943 106311981 -175881683 - MER4A LTR ERV1 0 465 426 2220 112 0 3 chr1 106311981 106312277 -175881387 - AluSx SINE Alu -17 295 1 2026 106 77 131 chr1 106312277 106312880 -175880784 - MER4A LTR ERV1 -39 426 1 2237 131 0 0 chr1 106313084 106313389 -175880275 + AluSx SINE Alu 1 305 -7 1308 228 34 64 chr1 106313979 106314960 -175878704 + L1MD2 LINE L1 2453 3346 -2800 1381 92 219 0 chr1 106314961 106315189 -175878475 + LTR12 LTR ERV1 8 285 -429 339 214 11 0 chr1 106315190 106315279 -175878385 + LTR30 LTR ERV1 553 642 -80 694 125 0 0 chr1 106315281 106315385 -175878279 + LTR12 LTR ERV1 481 584 -130 33106 100 7 9 chr1 106315395 106320311 -175873353 + HERV9 LTR ERV1 40 4944 -3455 555 163 64 40 chr1 106320327 106320529 -175873135 + HERV17 LTR ERV1 694 900 -7726 * 6161 101 3 0 chr1 106320527 106321421 -175872243 + HERV17 LTR ERV1 7503 8399 0 1279 104 29 138 chr1 106321421 106321789 -175871875 + LTR12 LTR ERV1 1 2032 -406 272 211 14 0 chr1 106321790 106321861 -175871803 + LTR30 LTR ERV1 553 624 -98 714 151 25 0 chr1 106321861 106321980 -175871684 + LTR12 LTR ERV1 359 480 -234 3512 239 34 8 chr1 106322037 106323158 -175870506 + L1MD2 LINE L1 3373 4522 -1624 35568 79 6 7 chr1 106323331 106329480 -175864184 + L1PA6 LINE L1 11 6154 0 5702 186 53 16 chr1 106329467 106329688 -175863976 + L1MD2 LINE L1 4478 4689 -1670 * 2098 126 0 3 chr1 106329688 106329999 -175863665 + AluSg SINE Alu 1 310 0 5702 186 53 16 chr1 106329999 106330242 -175863422 + L1MD2 LINE L1 4689 4922 -1437 378 0 0 0 chr1 106330242 106330284 -175863380 + (CA)n Simple_repeat Simple_repeat 2 43 0 5702 186 53 16 chr1 106330284 106331635 -175862029 + L1MD2 LINE L1 4922 6357 -2 30 27 0 0 chr1 106331757 106331794 -175861870 + AT_rich Low_complexity Low_complexity 1 37 0 384 227 0 0 chr1 106331800 106331866 -175861798 - Tigger3(Golem) DNA MER2_type -2954 75 10 2465 96 37 40 chr1 106331866 106332190 -175861474 + THE1C LTR MaLR 1 325 -50 2399 100 0 0 chr1 106332190 106332500 -175861164 + AluSx SINE Alu 1 310 -2 2465 96 37 40 chr1 106332500 106332551 -175861113 + THE1C LTR MaLR 325 375 0 2148 131 77 6 chr1 106332899 106333249 -175860415 + THE1C LTR MaLR 1 375 0 337 280 136 8 chr1 106333338 106333463 -175860201 - MIR SINE MIR -116 146 6 419 209 78 31 chr1 106333887 106334016 -175859648 + L1MC2 LINE L1 6210 6344 0 414 306 27 7 chr1 106334340 106334487 -175859177 + MIR SINE MIR 28 177 -85 1100 239 35 67 chr1 106334504 106334880 -175858784 - L1ME3A LINE L1 -68 6102 5739 22 0 0 0 chr1 106335018 106335040 -175858624 + AT_rich Low_complexity Low_complexity 1 22 0 497 189 154 94 chr1 106335417 106335650 -175858014 - MER112 DNA MER1_type -1 259 13 898 122 0 24 chr1 106336215 106336379 -175857285 + (TCTA)n Simple_repeat Simple_repeat 1 160 0 210 147 0 0 chr1 106336461 106336495 -175857169 + L2 LINE L2 3280 3313 0 291 257 139 10 chr1 106336531 106336632 -175857032 + L2 LINE L2 3199 3312 -1 1129 217 78 42 chr1 106336698 106337030 -175856634 + MER2 DNA MER2_type 1 344 0 34 24 0 0 chr1 106337300 106337341 -175856323 + AT_rich Low_complexity Low_complexity 1 41 0 206 262 33 0 chr1 106338299 106338360 -175855304 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 676 278 81 5 chr1 106338871 106339094 -175854570 + MIR SINE MIR 13 252 -10 296 209 232 36 chr1 106339224 106339366 -175854298 - MLT1L LTR MaLR -169 446 333 1770 141 0 4 chr1 106339366 106339622 -175854042 + AluJb SINE Alu 6 260 -52 296 209 232 36 chr1 106339622 106339745 -175853919 - MLT1L LTR MaLR -282 333 101 808 207 0 20 chr1 106339978 106340128 -175853536 + FRAM SINE Alu 11 157 -19 1419 225 37 52 chr1 106340301 106340582 -175853082 - LTR40b LTR ERVL 0 462 223 1998 131 7 0 chr1 106340582 106340892 -175852772 + AluSq SINE Alu 1 312 0 1419 225 37 52 chr1 106340892 106340992 -175852672 - LTR40b LTR ERVL -239 223 123 1214 215 41 0 chr1 106340993 106341239 -175852425 - HERVL40 LTR ERVL -28 5502 5247 573 335 32 7 chr1 106341179 106341457 -175852207 - MER89-int LTR ERV1 -297 6504 6220 * 511 295 49 49 chr1 106341732 106341976 -175851688 - HERVL40 LTR ERVL -333 2704 2461 254 149 0 149 chr1 106342040 106342114 -175851550 - HERVL40 LTR ERVL -602 2435 2373 1720 205 30 35 chr1 106342462 106342984 -175850680 - HERVL40 LTR ERVL -1089 4441 3876 979 281 33 13 chr1 106342982 106343288 -175850376 - HERVL40 LTR ERVL -4327 1203 892 * 619 236 37 6 chr1 106343292 106343453 -175850211 - HERVL40 LTR ERVL -5318 212 47 2002 211 56 20 chr1 106343488 106343934 -175849730 - LTR40b LTR ERVL 0 462 1 238 294 0 49 chr1 106344118 106344220 -175849444 - LTR67 LTR ERVL -2 555 459 287 317 30 20 chr1 106344346 106344447 -175849217 - LTR67 LTR ERVL -341 216 115 1354 101 0 35 chr1 106344792 106344814 -175848850 + L1PA15 LINE L1 5463 5484 -681 2361 94 3 0 chr1 106344814 106345111 -175848553 + AluSp SINE Alu 1 298 -15 1354 101 0 35 chr1 106345111 106345287 -175848377 + L1PA15 LINE L1 5484 5654 -511 2260 154 56 18 chr1 106345297 106345693 -175847971 - MSTA LTR MaLR -10 418 8 3461 126 13 13 chr1 106345694 106346217 -175847447 + L1PA15 LINE L1 5643 6165 0 2179 103 3 7 chr1 106346942 106347234 -175846430 - AluSg SINE Alu -19 291 1 199 167 30 0 chr1 106347297 106347363 -175846301 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 1303 238 60 12 chr1 106347758 106348090 -175845574 + L1ME1 LINE L1 5721 6068 -98 978 162 47 31 chr1 106348092 106348283 -175845381 - L1MB4 LINE L1 -1 6179 5986 449 34 17 0 chr1 106348633 106348692 -175844972 + (CA)n Simple_repeat Simple_repeat 2 61 0 329 75 19 0 chr1 106348746 106348799 -175844865 + (CA)n Simple_repeat Simple_repeat 2 55 0 2267 112 3 0 chr1 106349290 106349595 -175844069 + AluSx SINE Alu 1 306 -6 930 302 91 16 chr1 106350901 106351352 -175842312 - LTR33 LTR ERVL -35 486 2 690 304 109 0 chr1 106351442 106351662 -175842002 + MIR SINE MIR 19 262 0 428 277 124 49 chr1 106351669 106351936 -175841728 + L1ME LINE L1 5460 5746 -375 997 215 5 24 chr1 106351964 106352173 -175841491 - MLT1F1 LTR MaLR 0 567 363 321 291 17 17 chr1 106352612 106352729 -175840935 - L3 LINE CR1 -324 1253 1137 276 298 110 70 chr1 106352859 106353235 -175840429 - MLT1K LTR MaLR 0 615 200 537 296 206 15 chr1 106353438 106353827 -175839837 - L2 LINE L2 -3 3310 2848 206 328 16 0 chr1 106354412 106354476 -175839188 + L2 LINE L2 2910 2974 -298 40 37 0 0 chr1 106354571 106354625 -175839039 + AT_rich Low_complexity Low_complexity 1 54 0 1026 152 42 21 chr1 106355322 106355513 -175838151 + MER20 DNA MER1_type 25 219 0 2415 104 0 0 chr1 106355615 106355924 -175837740 - AluSc SINE Alu 0 309 1 4301 131 22 14 chr1 106356198 106356846 -175836818 + MER39B LTR ERV1 1 653 0 371 269 154 13 chr1 106356876 106357032 -175836632 + MIR SINE MIR 61 238 -24 1691 100 56 16 chr1 106357148 106357399 -175836265 - AluSg SINE Alu -10 300 40 21 0 0 0 chr1 106357983 106358004 -175835660 + AT_rich Low_complexity Low_complexity 1 21 0 575 245 34 7 chr1 106358740 106358887 -175834777 - MIR SINE MIR -68 194 44 2334 85 7 0 chr1 106359575 106359869 -175833795 - AluSx SINE Alu -16 296 1 218 350 109 39 chr1 106359915 106360198 -175833466 - L3 LINE CR1 -2 1575 1273 2239 114 26 23 chr1 106361077 106361210 -175832454 - L1PA13 LINE L1 0 6163 6032 2434 85 0 0 chr1 106361210 106361505 -175832159 - AluSc SINE Alu -14 295 1 2239 114 26 23 chr1 106361505 106361722 -175831942 - L1PA13 LINE L1 -131 6032 5812 1844 155 3 10 chr1 106361733 106362024 -175831640 - AluSx SINE Alu -6 306 18 183 114 0 0 chr1 106362540 106362575 -175831089 + (T)n Simple_repeat Simple_repeat 1 35 0 186 97 32 0 chr1 106362604 106362635 -175831029 + L2 LINE L2 3282 3313 0 1656 194 0 3 chr1 106362738 106363026 -175830638 + AluJb SINE Alu 1 287 -25 480 264 132 11 chr1 106363852 106363962 -175829702 - MIR SINE MIR -46 216 121 189 0 0 0 chr1 106363962 106363983 -175829681 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 480 264 132 11 chr1 106363983 106364046 -175829618 - MIR SINE MIR -141 121 22 24 32 0 0 chr1 106365020 106365051 -175828613 + AT_rich Low_complexity Low_complexity 1 31 0 718 48 19 10 chr1 106368507 106368610 -175825054 + (TTTC)n Simple_repeat Simple_repeat 2 105 0 1773 199 0 3 chr1 106368618 106368930 -175824734 - AluJo SINE Alu -1 311 1 1381 219 74 44 chr1 106369538 106370009 -175823655 - MER39 LTR ERV1 0 682 6 190 279 93 70 chr1 106370423 106370509 -175823155 - L2 LINE L2 -18 3295 3208 245 319 123 10 chr1 106370617 106370821 -175822843 - L2 LINE L2 -213 3059 2833 528 265 101 70 chr1 106370839 106371137 -175822527 + L2 LINE L2 2967 3273 -40 314 329 125 13 chr1 106371818 106371970 -175821694 - L2 LINE L2 0 3272 3104 2048 98 4 0 chr1 106372289 106372555 -175821109 - AluSp SINE Alu -6 307 41 2305 113 0 0 chr1 106373058 106373367 -175820297 - AluSx SINE Alu -3 309 1 1168 173 33 14 chr1 106373386 106373600 -175820064 + L1MC1 LINE L1 6116 6333 0 269 218 287 23 chr1 106373650 106373737 -175819927 - MER69A DNA AcHobo -66 111 2 1721 204 0 0 chr1 106374816 106375115 -175818549 - AluJo SINE Alu -13 299 1 372 236 47 0 chr1 106375248 106375354 -175818310 + MIR SINE MIR 116 226 -36 383 250 0 0 chr1 106375368 106375444 -175818220 - MER69 DNA AcHobo 0 2526 2451 * 632 214 0 78 chr1 106375443 106375597 -175818067 - MER69 DNA AcHobo -1084 142 1 288 167 0 0 chr1 106375633 106375681 -175817983 - L2 LINE L2 0 3313 3266 1264 157 16 41 chr1 106375927 106376045 -175817619 - L1MB3 LINE L1 -10 6173 6063 1615 162 19 55 chr1 106376045 106376353 -175817311 - AluJo SINE Alu -15 297 1 1264 157 16 41 chr1 106376353 106376476 -175817188 - L1MB3 LINE L1 -120 6063 5938 1572 138 4 15 chr1 106376529 106376789 -175816875 - L1MB3 LINE L1 -241 5942 5686 490 265 0 52 chr1 106376964 106377100 -175816564 + MIR3 SINE MIR 30 158 -50 388 194 0 0 chr1 106377147 106377209 -175816455 - MER81 DNA DNA -52 62 1 1664 175 42 0 chr1 106377844 106378130 -175815534 + AluJb SINE Alu 1 298 -14 1934 156 0 0 chr1 106378380 106378690 -175814974 - AluSx SINE Alu 0 310 1 300 281 67 59 chr1 106378801 106378956 -175814708 - MIR SINE MIR -59 203 40 2349 252 84 96 chr1 106379499 106379606 -175814058 - L2 LINE L2 -27 3286 3179 6032 55 10 0 chr1 106379606 106380309 -175813355 - L1PA6 LINE L1 0 6154 5445 2349 252 84 96 chr1 106380309 106381010 -175812654 - L2 LINE L2 -134 3179 2471 2168 125 0 3 chr1 106381010 106381305 -175812359 + AluSx SINE Alu 5 298 -14 276 226 0 0 chr1 106381311 106381373 -175812291 + L1MC1 LINE L1 6259 6320 -13 2349 252 84 96 chr1 106381373 106382147 -175811517 - L2 LINE L2 -847 2466 1224 201 74 0 0 chr1 106382350 106382377 -175811287 + (GA)n Simple_repeat Simple_repeat 2 28 0 449 285 129 11 chr1 106382979 106383165 -175810499 - L2 LINE L2 -2223 1091 884 * 487 341 63 34 chr1 106383163 106383577 -175810087 - L3 LINE CR1 -303 1274 849 185 191 16 111 chr1 106383757 106383820 -175809844 - L2 LINE L2 0 3272 3216 412 324 133 31 chr1 106383907 106384200 -175809464 + L2 LINE L2 1453 1775 -1539 534 252 21 15 chr1 106384395 106384547 -175809117 + MIR SINE MIR 40 192 -65 334 285 105 41 chr1 106385892 106386331 -175807333 - L1M4 LINE L1 -1090 5056 4590 327 314 159 8 chr1 106386374 106386638 -175807026 - L2 LINE L2 -1950 1364 1061 246 304 88 33 chr1 106387991 106388172 -175805492 + L2 LINE L2 2464 2654 -660 223 288 0 0 chr1 106389237 106389296 -175804368 - L2 LINE L2 -217 3055 2997 1654 160 4 18 chr1 106389297 106389578 -175804086 + AluJb SINE Alu 1 277 -35 475 292 88 5 chr1 106389876 106390068 -175803596 + MIR SINE MIR 6 213 -49 239 276 11 35 chr1 106390040 106390127 -175803537 - MIR SINE MIR 0 262 178 * 2542 113 3 3 chr1 106390142 106390505 -175803159 - L1MB3 LINE L1 -7 6176 5814 292 156 10 0 chr1 106391766 106391833 -175801831 - L1MB3 LINE L1 -351 5829 5766 313 280 50 20 chr1 106391833 106391933 -175801731 - MIR SINE MIR -130 132 30 468 251 70 41 chr1 106392312 106392483 -175801181 + MLT1K LTR MaLR 413 588 0 452 289 79 75 chr1 106392963 106393229 -175800435 - L2 LINE L2 -35 3278 3012 237 359 19 0 chr1 106393481 106393584 -175800080 - L2 LINE L2 0 3272 3168 308 322 137 53 chr1 106395725 106396179 -175797485 - MLT1K LTR MaLR -63 525 34 309 306 31 0 chr1 106396215 106396313 -175797351 + MIR SINE MIR 161 261 -1 239 208 144 80 chr1 106396389 106396514 -175797150 + MARNA DNA Mariner 17 149 -437 835 270 28 39 chr1 106396946 106397137 -175796527 + LTR33 LTR ERVL 4 193 -328 3512 136 32 9 chr1 106397137 106397674 -175795990 - MER44D DNA MER2_type 0 605 2 835 270 28 39 chr1 106397674 106397767 -175795897 + LTR33 LTR ERVL 193 285 -236 412 378 16 12 chr1 106398250 106398499 -175795165 + L2 LINE L2 928 1177 -2137 430 305 48 84 chr1 106398530 106398946 -175794718 + L2 LINE L2 1706 2106 -1208 1209 183 118 19 chr1 106399102 106399364 -175794300 + AluJo SINE Alu 1 288 -24 291 286 0 13 chr1 106399364 106399441 -175794223 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 2332 203 27 13 chr1 106399563 106399998 -175793666 + MER21B LTR ERV1 1 441 -422 438 145 0 0 chr1 106399998 106400067 -175793597 - THE1C LTR MaLR 0 428 360 21859 117 15 17 chr1 106400076 106402398 -175791266 + L1PA6 LINE L1 11 2325 -3821 275 49 24 0 chr1 106402398 106402439 -175791225 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 21859 117 15 17 chr1 106402439 106403463 -175790201 + L1PA6 LINE L1 2325 3350 -2796 15672 62 9 0 chr1 106403499 106406194 -175787470 + L1PA6 LINE L1 3454 6164 0 1520 113 103 34 chr1 106406194 106406486 -175787178 - THE1C LTR MaLR -63 312 1 * 1579 127 38 91 chr1 106406486 106406830 -175786834 + MER21A LTR ERV1 537 925 -6 2068 147 0 0 chr1 106407007 106407300 -175786364 - AluJb SINE Alu -17 295 3 1410 225 92 12 chr1 106407334 106407680 -175785984 + MLT1A2 LTR MaLR 1 374 0 2309 97 0 0 chr1 106407785 106408074 -175785590 - AluSc SINE Alu -1 308 20 576 336 30 68 chr1 106408085 106408421 -175785243 + L2 LINE L2 2948 3270 -2 486 248 38 15 chr1 106408660 106408793 -175784871 + L3 LINE CR1 960 1095 -482 230 178 0 0 chr1 106408798 106408843 -175784821 - L2 LINE L2 0 3313 3269 1315 257 41 18 chr1 106408908 106409235 -175784429 - MLT1I LTR MaLR 0 409 86 209 303 155 21 chr1 106409267 106409409 -175784255 + MIR SINE MIR 99 259 -3 21 0 0 0 chr1 106410197 106410218 -175783446 + AT_rich Low_complexity Low_complexity 1 21 0 1625 164 42 0 chr1 106411123 106411424 -175782240 + AluJb SINE Alu 12 323 0 381 269 15 69 chr1 106411443 106411573 -175782091 + MER5A DNA MER1_type 17 139 -50 212 216 98 0 chr1 106413029 106413080 -175780584 - L2 LINE L2 0 3313 3258 25 0 0 0 chr1 106413204 106413229 -175780435 + AT_rich Low_complexity Low_complexity 1 25 0 195 325 65 39 chr1 106413233 106413387 -175780277 + L2 LINE L2 3107 3264 -8 330 138 15 0 chr1 106413551 106413616 -175780048 + L1MB4 LINE L1 6100 6165 -15 360 287 39 39 chr1 106414268 106414397 -175779267 - L2 LINE L2 -211 3061 2933 254 370 0 0 chr1 106415129 106415221 -175778443 + MIR SINE MIR 50 141 -67 23 0 0 0 chr1 106415345 106415368 -175778296 + AT_rich Low_complexity Low_complexity 1 23 0 1557 205 10 20 chr1 106415368 106415666 -175777998 - AluJo SINE Alu -17 295 1 21 0 0 0 chr1 106416198 106416219 -175777445 + AT_rich Low_complexity Low_complexity 1 21 0 2281 105 0 43 chr1 106416890 106417215 -175776449 - AluJo SINE Alu -1 311 1 1898 156 3 3 chr1 106417429 106417724 -175775940 - AluSx SINE Alu -17 295 1 954 192 34 43 chr1 106419350 106419558 -175774106 + MER58A DNA MER1_type 19 224 0 450 299 92 17 chr1 106419575 106419749 -175773915 + MIR SINE MIR 76 262 0 1297 312 13 35 chr1 106420829 106421290 -175772374 - LTR16B LTR ERVL -13 451 1 472 315 48 72 chr1 106421306 106421994 -175771670 - HERV16 LTR ERVL -17 5287 4555 307 269 13 0 chr1 106422051 106422129 -175771535 - ERVL LTR ERVL -1073 4691 4613 1810 274 53 29 chr1 106422260 106422811 -175770853 + MLT1E LTR MaLR 30 593 0 1068 326 48 19 chr1 106422824 106423340 -175770324 - ERVL LTR ERVL -1907 3857 3327 1166 289 70 16 chr1 106423342 106423716 -175769948 - ERVL LTR ERVL -2006 2990 2597 269 372 0 25 chr1 106423727 106423848 -175769816 - ERVL LTR ERVL -2846 2150 2033 631 255 47 0 chr1 106423865 106424014 -175769650 + L2 LINE L2 3154 3309 -4 238 200 67 0 chr1 106424020 106424080 -175769584 - L1ME LINE L1 -685 5436 5373 29 47 0 0 chr1 106424105 106424148 -175769516 + AT_rich Low_complexity Low_complexity 1 43 0 284 320 78 20 chr1 106424332 106424485 -175769179 + L2 LINE L2 3108 3269 -3 184 167 42 0 chr1 106424738 106424786 -175768878 + (TA)n Simple_repeat Simple_repeat 1 50 0 205 93 0 47 chr1 106424867 106424910 -175768754 + (TA)n Simple_repeat Simple_repeat 2 42 0 483 155 179 0 chr1 106424913 106424997 -175768667 + FRAM SINE Alu 63 161 -15 406 223 122 91 chr1 106425062 106425259 -175768405 - L2 LINE L2 -7 3306 3104 244 398 0 8 chr1 106425349 106425477 -175768187 - L2 LINE L2 -223 3090 2964 508 304 14 20 chr1 106425919 106426067 -175767597 - MIR SINE MIR -115 147 1 586 223 50 36 chr1 106426659 106426798 -175766866 + MIR3 SINE MIR 3 143 -65 969 271 115 54 chr1 106429547 106430104 -175763560 + L1ME4a LINE L1 5527 6117 -4 6151 91 11 4 chr1 106430295 106432221 -175761443 - L1PA13 LINE L1 0 6163 4215 1268 235 116 9 chr1 106433896 106434318 -175759346 - MLT1C LTR MaLR 0 467 1 678 260 78 18 chr1 106434792 106435011 -175758653 + MIR SINE MIR 10 241 -21 407 274 59 65 chr1 106435233 106435419 -175758245 + Charlie8 DNA MER1_type 4 188 -2229 355 289 29 0 chr1 106435441 106435545 -175758119 + MER94 DNA DNA 23 129 -5 1761 206 3 6 chr1 106435965 106436276 -175757388 - AluJo SINE Alu -2 310 1 2212 120 0 0 chr1 106436280 106436580 -175757084 - AluSc SINE Alu -9 300 1 2680 39 0 3 chr1 106436844 106437155 -175756509 + AluY SINE Alu 1 310 -1 370 349 13 18 chr1 106437508 106437705 -175755959 + MIR SINE MIR 18 212 -50 2142 127 22 50 chr1 106438254 106438655 -175755009 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chr1 106440022 106440057 -175753607 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 2132 113 3 0 chr1 106440424 106440716 -175752948 + AluY SINE Alu 4 296 -15 216 273 15 15 chr1 106440716 106440776 -175752888 + L3 LINE CR1 1518 1577 0 427 256 98 12 chr1 106441223 106441387 -175752277 - HERVL LTR ERVL -637 5017 4840 948 278 30 67 chr1 106441679 106442111 -175751553 - L2 LINE L2 -42 3271 2856 377 211 21 99 chr1 106442199 106442251 -175751413 + MIR SINE MIR 100 154 -108 1840 90 116 4 chr1 106442251 106442518 -175751146 + AluYa8 SINE Alu 1 297 -13 377 211 21 99 chr1 106442518 106442607 -175751057 + MIR SINE MIR 154 230 -32 378 266 0 0 chr1 106443329 106443408 -175750256 + L2 LINE L2 3234 3312 -1 2329 96 3 3 chr1 106443916 106444219 -175749445 - AluSp SINE Alu -8 305 3 1721 148 3 38 chr1 106444678 106444968 -175748696 + AluJo SINE Alu 3 282 -30 216 0 0 0 chr1 106444973 106444997 -175748667 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr1 106445228 106445249 -175748415 + AT_rich Low_complexity Low_complexity 1 21 0 244 220 0 0 chr1 106445401 106445451 -175748213 - L2 LINE L2 -3 3269 3220 366 278 108 107 chr1 106445775 106445948 -175747716 - L1M2 LINE L1 -5450 1399 1228 189 0 0 0 chr1 106445948 106445969 -175747695 + (TGG)n Simple_repeat Simple_repeat 3 23 0 366 278 108 107 chr1 106445969 106446410 -175747254 - L1M2 LINE L1 -5621 1228 451 275 226 0 0 chr1 106447458 106447511 -175746153 - MER69 DNA AcHobo -1161 65 13 2102 211 67 13 chr1 106448153 106448896 -175744768 - L1ME1 LINE L1 -229 6006 5221 * 5758 224 99 16 chr1 106448885 106451314 -175742350 - L1ME1 LINE L1 -1773 4442 1836 637 289 93 50 chr1 106451423 106451887 -175741777 - L1ME1 LINE L1 -5831 565 82 453 93 34 17 chr1 106451921 106452039 -175741625 + (TA)n Simple_repeat Simple_repeat 1 120 0 2366 76 0 3 chr1 106452048 106452338 -175741326 - AluSq SINE Alu -24 289 1 513 247 63 5 chr1 106452342 106452532 -175741132 - L1MC5 LINE L1 -430 7531 7331 1030 128 17 17 chr1 106452533 106452713 -175740951 - MER20 DNA MER1_type 0 219 40 186 150 33 17 chr1 106454070 106454130 -175739534 + CT-rich Low_complexity Low_complexity 4 64 0 21 0 0 0 chr1 106454334 106454355 -175739309 + AT_rich Low_complexity Low_complexity 1 21 0 219 327 0 19 chr1 106454900 106455004 -175738660 + CT-rich Low_complexity Low_complexity 1 102 0 2150 118 6 25 chr1 106455303 106455618 -175738046 + AluSx SINE Alu 1 309 -3 568 260 110 84 chr1 106455981 106456549 -175737115 - L1M2 LINE L1 -5618 1231 511 581 241 135 14 chr1 106456556 106456763 -175736901 - MIR SINE MIR -21 241 10 25 0 0 0 chr1 106456970 106456995 -175736669 + AT_rich Low_complexity Low_complexity 1 25 0 190 226 0 57 chr1 106458227 106458280 -175735384 - MIR SINE MIR -26 236 187 21 0 0 0 chr1 106459287 106459308 -175734356 + AT_rich Low_complexity Low_complexity 1 21 0 298 296 80 123 chr1 106459419 106459743 -175733921 - L2 LINE L2 -37 3235 2926 412 200 21 11 chr1 106459754 106459849 -175733815 - MER112 DNA MER1_type -8 252 157 602 317 161 10 chr1 106459973 106460364 -175733300 - L2 LINE L2 -405 2909 2460 1610 162 12 79 chr1 106460420 106460748 -175732916 + AluJo SINE Alu 1 306 -6 220 281 18 0 chr1 106461058 106461115 -175732549 - MIR SINE MIR -156 106 49 221 154 26 0 chr1 106461289 106461328 -175732336 + (TG)n Simple_repeat Simple_repeat 1 40 0 393 279 128 50 chr1 106461364 106461543 -175732121 - MIR SINE MIR -44 218 26 410 277 96 37 chr1 106461661 106461849 -175731815 + MIR SINE MIR 13 211 -51 21 0 0 0 chr1 106461885 106461906 -175731758 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 106463514 106463544 -175730120 + AT_rich Low_complexity Low_complexity 1 30 0 229 333 56 19 chr1 106465135 106465243 -175728421 + MIR3 SINE MIR 2 113 -95 815 226 93 29 chr1 106467134 106467338 -175726326 + MIR SINE MIR 2 218 -44 316 303 15 54 chr1 106468273 106468472 -175725192 - MIR SINE MIR -67 141 8 478 121 169 24 chr1 106468999 106469123 -175724541 - Charlie1 DNA MER1_type -22 2739 2598 2112 123 7 10 chr1 106469564 106469864 -175723800 + AluSx SINE Alu 1 299 -13 255 152 0 0 chr1 106470031 106470077 -175723587 + (TA)n Simple_repeat Simple_repeat 1 46 0 1090 225 64 0 chr1 106470137 106470373 -175723291 - MIR SINE MIR -10 252 2 2476 48 0 3 chr1 106470429 106470724 -175722940 + AluY SINE Alu 1 294 -17 4541 183 66 41 chr1 106470791 106471938 -175721726 - L1MC3 LINE L1 -1 7784 6609 303 277 21 0 chr1 106471983 106472077 -175721587 + L1MC4 LINE L1 6611 6706 -1336 349 273 9 0 chr1 106472077 106472187 -175721477 + (TA)n Simple_repeat Simple_repeat 2 112 0 268 247 52 13 chr1 106472232 106472309 -175721355 + MIR SINE MIR 183 262 0 389 264 61 33 chr1 106472591 106472803 -175720861 - MER102a DNA MER1_type -38 292 75 21 36 0 0 chr1 106473251 106473279 -175720385 + AT_rich Low_complexity Low_complexity 1 28 0 1642 189 3 41 chr1 106475799 106476116 -175717548 - AluJo SINE Alu -7 305 1 2111 126 14 0 chr1 106476128 106476421 -175717243 - AluSx SINE Alu -15 297 1 775 270 193 29 chr1 106477231 106477838 -175715826 - L1MC3 LINE L1 -474 5647 5269 617 308 159 11 chr1 106478064 106478339 -175715325 - L1MC3 LINE L1 -1214 4932 4699 183 42 0 0 chr1 106478339 106478363 -175715301 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 617 308 159 11 chr1 106478363 106478552 -175715112 - L1MC3 LINE L1 -1447 4699 4399 542 198 55 65 chr1 106478632 106478849 -175714815 - MER112 DNA MER1_type -45 215 1 214 306 56 66 chr1 106479007 106479203 -175714461 - L2 LINE L2 -652 2662 2469 328 274 248 13 chr1 106479422 106479579 -175714085 - MIR SINE MIR -22 240 47 334 148 136 45 chr1 106479612 106479700 -175713964 - MIR SINE MIR -105 157 62 736 236 183 0 chr1 106479802 106480010 -175713654 - MIR SINE MIR 0 262 17 567 179 32 2 chr1 106480010 106480190 -175713474 + MER58A DNA MER1_type 1 216 -8 2416 53 0 10 chr1 106480191 106480495 -175713169 + AluY SINE Alu 1 301 -10 297 206 165 10 chr1 106481226 106481323 -175712341 - L1MA10 LINE L1 0 6334 6223 1765 190 52 90 chr1 106481352 106481400 -175712264 - L1MEc LINE L1 -3174 3041 2993 1611 89 101 28 chr1 106481400 106481647 -175712017 - AluSx SINE Alu -18 294 30 1765 190 52 90 chr1 106481647 106481711 -175711953 - L1MEc LINE L1 -3222 2993 2928 1537 69 5 0 chr1 106481711 106481915 -175711749 + L1PA4 LINE L1 5948 6152 -3 1765 190 52 90 chr1 106481915 106482359 -175711305 - L1MEc LINE L1 -3287 2928 2508 2195 122 0 6 chr1 106482359 106482670 -175710994 - AluSx SINE Alu -3 309 1 1765 190 52 90 chr1 106482670 106482742 -175710922 - L1MEc LINE L1 -3707 2508 2435 846 189 22 39 chr1 106482752 106482932 -175710732 - AluJo SINE Alu -14 298 122 318 185 98 22 chr1 106482943 106483035 -175710629 - L1MEc LINE L1 -6293 103 5 505 233 64 52 chr1 106483220 106483392 -175710272 + MER5B DNA MER1_type 4 177 -1 195 42 0 0 chr1 106483843 106483867 -175709797 + (TATATG)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr1 106484670 106484692 -175708972 + AT_rich Low_complexity Low_complexity 1 22 0 2375 93 0 0 chr1 106484913 106485213 -175708451 + AluSx SINE Alu 1 300 -12 709 208 0 8 chr1 106485409 106485534 -175708130 + AluJb SINE Alu 3 126 -186 1421 192 60 26 chr1 106485535 106485837 -175707827 + AluJo SINE Alu 1 312 0 23 0 0 0 chr1 106485897 106485920 -175707744 + AT_rich Low_complexity Low_complexity 1 23 0 1957 136 4 0 chr1 106486369 106486671 -175706993 + AluSx SINE Alu 5 307 0 256 165 51 13 chr1 106486693 106486772 -175706892 + (TA)n Simple_repeat Simple_repeat 1 82 0 1673 164 21 14 chr1 106486772 106487058 -175706606 - AluSx SINE Alu -24 288 1 422 250 136 28 chr1 106487076 106487252 -175706412 - MIR SINE MIR -21 241 47 863 177 20 35 chr1 106487358 106487556 -175706108 - MER3 DNA MER1_type -2 207 13 306 333 92 0 chr1 106488772 106488892 -175704772 - L2 LINE L2 -21 3251 3121 317 268 132 82 chr1 106488960 106489203 -175704461 - MIR SINE MIR -2 260 6 242 301 144 62 chr1 106489220 106489366 -175704298 + MER5B DNA MER1_type 21 178 0 654 136 0 143 chr1 106489374 106489528 -175704136 + FLAM_A SINE Alu 1 132 -1 1818 152 10 10 chr1 106489923 106490220 -175703444 - AluJb SINE Alu -15 297 1 582 211 160 13 chr1 106491192 106491348 -175702316 - MER5A DNA MER1_type -9 180 2 598 121 0 0 chr1 106492000 106492083 -175701581 + AluJ/FLAM SINE Alu 1 83 -229 413 187 0 11 chr1 106492136 106492227 -175701437 + GA-rich Low_complexity Low_complexity 3 92 0 2937 222 69 13 chr1 106492656 106493740 -175699924 - L1ME1 LINE L1 -39 6521 5324 1883 247 46 6 chr1 106493797 106494275 -175699389 - MER74B LTR ERVL -67 555 59 6648 210 62 83 chr1 106494278 106494425 -175699239 - L1ME1 LINE L1 -1212 5328 5179 1946 78 7 7 chr1 106494425 106494694 -175698970 - L1PA6 LINE L1 -4 6150 5882 6648 210 62 83 chr1 106494694 106495179 -175698485 - L1ME1 LINE L1 -1361 5179 4685 1830 153 23 7 chr1 106495179 106495479 -175698185 - AluJo SINE Alu -7 305 1 6648 210 62 83 chr1 106495479 106497112 -175696552 - L1ME1 LINE L1 -1855 4685 3143 2827 13 0 0 chr1 106497112 106497422 -175696242 + AluY SINE Alu 1 310 -1 6648 210 62 83 chr1 106497422 106498202 -175695462 - L1ME1 LINE L1 -3397 3143 2348 1091 156 204 48 chr1 106498934 106499248 -175694416 + MLT1A1 LTR MaLR 1 363 -2 2605 251 82 28 chr1 106499571 106500832 -175692832 - L1ME1 LINE L1 -4206 2334 1006 21 36 0 0 chr1 106501555 106501583 -175692081 + AT_rich Low_complexity Low_complexity 1 28 0 227 240 20 0 chr1 106501609 106501659 -175692005 - L3 LINE CR1 -3 1574 1524 438 299 69 0 chr1 106501688 106501832 -175691832 - MIR SINE MIR 0 262 109 392 308 158 14 chr1 106501834 106501980 -175691684 + MER5A DNA MER1_type 7 173 -16 461 331 98 44 chr1 106502374 106502941 -175690723 + L2 LINE L2 2653 3259 -54 247 282 14 0 chr1 106502940 106503011 -175690653 + MIR SINE MIR 170 241 -21 * 227 309 53 66 chr1 106504948 106505100 -175688564 - L1ME3A LINE L1 -53 6117 5968 202 330 21 32 chr1 106505488 106505582 -175688082 - MIR SINE MIR -158 104 12 847 306 70 40 chr1 106505973 106506372 -175687292 + L3 LINE CR1 1150 1560 -17 198 360 54 18 chr1 106506686 106506797 -175686867 - L2 LINE L2 -5 3267 3153 21 0 0 0 chr1 106508454 106508475 -175685189 + AT_rich Low_complexity Low_complexity 1 21 0 1589 134 14 47 chr1 106508892 106509168 -175684496 - AluJb SINE Alu -6 306 40 1717 101 16 4 chr1 106510465 106510722 -175682942 - L1MA5A LINE L1 -2 6295 6036 2411 262 198 35 chr1 106510747 106510817 -175682847 - HAL1 LINE L1 -669 1838 1781 375 23 0 0 chr1 106510817 106510861 -175682803 + (TTTTG)n Simple_repeat Simple_repeat 4 47 0 2411 262 198 35 chr1 106510861 106511591 -175682073 - HAL1 LINE L1 -726 1781 1172 1331 151 90 10 chr1 106511591 106511890 -175681774 - MER33 DNA MER1_type -1 323 1 2411 262 198 35 chr1 106511890 106511903 -175681761 - HAL1 LINE L1 -1335 1172 1162 198 0 0 0 chr1 106511903 106511925 -175681739 + (TTG)n Simple_repeat Simple_repeat 2 23 0 2411 262 198 35 chr1 106511925 106512603 -175681061 - HAL1 LINE L1 -1345 1162 101 208 307 56 47 chr1 106512824 106513016 -175680648 - MIR SINE MIR -21 241 45 347 163 76 33 chr1 106514000 106514048 -175679616 - L1MB2 LINE L1 -2 6169 6125 2415 91 3 0 chr1 106514048 106514355 -175679309 - AluSg SINE Alu -1 309 2 347 163 76 33 chr1 106514355 106514398 -175679266 - L1MB2 LINE L1 -46 6125 6074 196 290 130 38 chr1 106514471 106514602 -175679062 - L2 LINE L2 -7 3265 3123 220 348 192 18 chr1 106514738 106515227 -175678437 - L2 LINE L2 -341 2973 2400 2208 88 14 3 chr1 106516763 106517057 -175676607 + AluSq SINE Alu 1 297 -16 299 278 99 56 chr1 106517064 106517226 -175676438 - MIR SINE MIR -6 256 88 466 309 112 4 chr1 106517310 106517543 -175676121 - MIR SINE MIR 0 262 5 2110 145 0 0 chr1 106517667 106517977 -175675687 + AluSg SINE Alu 1 310 0 180 0 0 0 chr1 106521037 106521057 -175672607 + (TA)n Simple_repeat Simple_repeat 2 21 0 641 293 35 31 chr1 106521340 106521599 -175672065 - MIR SINE MIR 0 262 3 748 99 31 99 chr1 106521647 106521809 -175671855 - L1MB3 LINE L1 -3 6180 6030 568 256 81 39 chr1 106522694 106523003 -175670661 + L1M4 LINE L1 4283 4604 -1542 3462 221 168 21 chr1 106523009 106524224 -175669440 - L1MC4 LINE L1 -181 7861 6469 2457 93 0 0 chr1 106525002 106525304 -175668360 + AluSg SINE Alu 1 302 -8 324 229 54 24 chr1 106525904 106526029 -175667635 - L1M3 LINE L1 -362 5803 5698 2076 135 3 0 chr1 106526058 106526369 -175667295 - AluSx SINE Alu 0 312 1 2998 69 57 2 chr1 106526448 106526832 -175666832 + MLT2A1 LTR ERVL 1 411 -33 240 35 0 0 chr1 106526832 106526861 -175666803 + (TG)n Simple_repeat Simple_repeat 2 30 0 2998 69 57 2 chr1 106526861 106526897 -175666767 + MLT2A1 LTR ERVL 411 444 0 4663 66 26 13 chr1 106526897 106527520 -175666144 + HERVL-A1-A1 LTR ERVL 1 631 -5023 * 16056 70 6 5 chr1 106527518 106529547 -175664117 + HERVL-A1-A1 LTR ERVL 1335 3366 -2288 13957 60 13 1 chr1 106529565 106531091 -175662573 + HERVL-A1-A1 LTR ERVL 3882 5433 -221 2314 80 0 3 chr1 106531091 106531392 -175662272 + AluY SINE Alu 1 300 -11 13957 60 13 1 chr1 106531392 106531617 -175662047 + HERVL-A1-A1 LTR ERVL 5433 5654 0 3275 63 45 2 chr1 106531617 106532043 -175661621 + MLT2A1 LTR ERVL 1 444 0 269 348 27 9 chr1 106532048 106532160 -175661504 - MIR SINE MIR -108 154 41 245 374 126 34 chr1 106532809 106533015 -175660649 + L3 LINE CR1 1337 1561 -16 399 272 51 6 chr1 106533190 106533348 -175660316 + L1MEc LINE L1 1598 1762 -4634 1311 102 34 0 chr1 106533369 106533545 -175660119 + AluSp SINE Alu 130 311 -2 1827 274 98 11 chr1 106533773 106534775 -175658889 + L1MEc LINE L1 2111 3153 -3062 899 64 0 0 chr1 106534777 106534887 -175658777 + AluSq/x SINE Alu 1 110 -203 666 259 139 13 chr1 106534897 106535372 -175658292 + L1MEc LINE L1 3230 3764 -2451 1490 259 71 39 chr1 106535380 106536182 -175657482 + L1MEc LINE L1 3835 4662 -1553 2232 86 14 0 chr1 106536391 106536718 -175656946 - AluSx SINE Alu 0 331 1 688 269 99 43 chr1 106537611 106537934 -175655730 + L3 LINE CR1 1138 1478 -99 1656 163 10 116 chr1 106537934 106538340 -175655324 - MLT1A1 LTR MaLR 0 365 3 304 314 49 0 chr1 106538635 106538737 -175654927 - L2 LINE L2 -5 3267 3161 1146 173 5 0 chr1 106539075 106539283 -175654381 - MER3 DNA MER1_type 0 209 1 2332 100 6 3 chr1 106539629 106539940 -175653724 + AluSx SINE Alu 1 312 0 188 309 105 42 chr1 106540435 106540626 -175653038 - MIR SINE MIR -25 237 35 323 302 222 5 chr1 106540676 106540888 -175652776 - MIR SINE MIR 0 262 5 2335 91 3 3 chr1 106541330 106541627 -175652037 + AluSp SINE Alu 1 297 -16 241 271 83 8 chr1 106541818 106541951 -175651713 + L1ME LINE L1 5518 5660 -461 183 80 0 0 chr1 106542036 106542061 -175651603 + (TA)n Simple_repeat Simple_repeat 2 26 0 215 200 0 0 chr1 106542081 106542116 -175651548 + (CA)n Simple_repeat Simple_repeat 2 36 0 509 186 10 10 chr1 106542137 106542239 -175651425 - U13 snRNA snRNA 0 104 3 1398 72 0 39 chr1 106542388 106542568 -175651096 + AluY SINE Alu 1 173 -138 21 36 0 0 chr1 106643710 106643738 -175549926 + AT_rich Low_complexity Low_complexity 1 28 0 398 266 156 0 chr1 106644277 106644386 -175549278 + L2 LINE L2 3188 3313 0 642 164 9 0 chr1 106644671 106644787 -175548877 + AluSg/x SINE Alu 150 266 -44 230 178 0 0 chr1 106644811 106644856 -175548808 - MLT1J LTR MaLR -37 474 430 950 33 0 16 chr1 106645052 106645174 -175548490 + L1PA5 LINE L1 6035 6154 0 2454 81 0 0 chr1 106645315 106645623 -175548041 + AluSc SINE Alu 1 308 -1 366 138 0 0 chr1 106646157 106646215 -175547449 - AluSx SINE Alu -3 298 241 1984 93 0 0 chr1 106646315 106646562 -175547102 - AluSx SINE Alu -65 247 1 204 228 0 139 chr1 106647450 106647529 -175546135 + L2 LINE L2 3199 3266 -6 883 155 91 5 chr1 106647619 106647806 -175545858 - MER105 DNA DNA -1 203 1 1198 22 0 0 chr1 106649183 106649322 -175544342 - L1PA5 LINE L1 -295 5859 5721 216 111 0 0 chr1 106650140 106650176 -175543488 + (TA)n Simple_repeat Simple_repeat 1 36 0 723 112 0 52 chr1 106650374 106650490 -175543174 + AluJb SINE Alu 190 299 -13 671 187 27 59 chr1 106650543 106650730 -175542934 - Charlie2a DNA MER1_type -1202 1660 1480 1385 271 30 73 chr1 106651251 106651841 -175541823 - Charlie2 DNA MER1_type -2272 590 26 2001 148 29 19 chr1 106652050 106652429 -175541235 - L1MB3 LINE L1 -6 6177 5795 2916 161 97 59 chr1 106652710 106653757 -175539907 - L1MB3 LINE L1 -497 5686 4594 1251 214 75 10 chr1 106653945 106654310 -175539354 - MLT1E1 LTR MaLR 0 654 208 422 82 0 0 chr1 106654319 106654380 -175539284 - L1PA16 LINE L1 -9 6157 6097 * 662 133 34 18 chr1 106654379 106654511 -175539153 - L1PA16 LINE L1 -103 6062 5930 439 298 74 27 chr1 106654509 106654912 -175538752 + L1MC4a LINE L1 3987 4408 -1738 * 2319 72 0 42 chr1 106655026 106655333 -175538331 + AluY SINE Alu 1 294 -17 328 267 24 91 chr1 106655337 106655502 -175538162 + L1MC4a LINE L1 4549 4702 -1444 317 285 50 69 chr1 106655556 106656118 -175537546 + L1MC4a LINE L1 4797 5366 -814 21 0 0 0 chr1 106656126 106656147 -175537517 + AT_rich Low_complexity Low_complexity 1 21 0 374 285 8 0 chr1 106656714 106656837 -175536827 + (CCA)n Simple_repeat Simple_repeat 1 124 0 1335 263 56 5 chr1 106657522 106657899 -175535765 + L1MC4a LINE L1 5356 5751 -2057 4386 146 123 8 chr1 106657903 106658008 -175535656 - MER21B LTR ERV1 0 863 771 2820 112 203 0 chr1 106658008 106658536 -175535128 - LTR24C LTR ERV1 0 635 1 4386 146 123 8 chr1 106658536 106659204 -175534460 - MER21B LTR ERV1 -92 771 1 312 231 32 139 chr1 106659221 106659472 -175534192 + L1MC4a LINE L1 5800 6023 -1785 1667 142 58 14 chr1 106659534 106659809 -175533855 - AluJb SINE Alu -23 289 3 3159 133 45 21 chr1 106659974 106659994 -175533670 - Tigger1 DNA MER2_type -1873 545 527 2228 115 0 6 chr1 106659994 106660306 -175533358 - AluSx SINE Alu -2 310 1 3159 133 45 21 chr1 106660306 106660817 -175532847 - Tigger1 DNA MER2_type -1891 527 1 290 256 100 0 chr1 106661694 106661784 -175531880 - MARNA DNA Mariner -397 189 91 2102 110 7 7 chr1 106661798 106662098 -175531566 - AluSx SINE Alu -12 300 1 317 299 40 94 chr1 106662170 106662371 -175531293 + L1ME LINE L1 5492 5681 -440 696 80 35 26 chr1 106662909 106663022 -175530642 + L1MB3 LINE L1 6058 6171 -12 24 0 0 0 chr1 106663075 106663099 -175530565 + AT_rich Low_complexity Low_complexity 1 24 0 189 176 0 0 chr1 106663638 106663672 -175529992 - L2 LINE L2 -556 2758 2725 201 132 105 0 chr1 106663685 106663723 -175529941 + MIR SINE MIR 96 137 -125 629 301 181 16 chr1 106663771 106664345 -175529319 + L2 LINE L2 1829 2497 -817 302 324 101 0 chr1 106664404 106664552 -175529112 + L2 LINE L2 2652 2814 -500 360 0 0 0 chr1 106665377 106665417 -175528247 + (CA)n Simple_repeat Simple_repeat 2 41 0 2161 106 7 0 chr1 106666470 106666762 -175526902 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr1 106666763 106666787 -175526877 + AT_rich Low_complexity Low_complexity 1 24 0 434 274 207 39 chr1 106666787 106666995 -175526669 + MIR SINE MIR 20 262 0 237 267 114 22 chr1 106667148 106667285 -175526379 - MIR SINE MIR -6 256 102 203 311 56 11 chr1 106667407 106667497 -175526167 - MIR SINE MIR -95 113 20 1709 167 4 11 chr1 106667682 106667958 -175525706 + AluJb SINE Alu 1 274 -38 1381 169 125 31 chr1 106670322 106670817 -175522847 + L1ME LINE L1 4965 5490 -676 233 373 84 0 chr1 106670873 106671015 -175522649 + L2 LINE L2 2235 2388 -926 530 346 75 63 chr1 106671301 106671799 -175521865 + L2 LINE L2 2766 3268 -4 360 261 17 0 chr1 106672523 106672638 -175521026 - L1MC4 LINE L1 -2 8040 7924 180 349 184 26 chr1 106673074 106673226 -175520438 - L3b LINE CR1 -50 1533 1358 2542 58 0 3 chr1 106674129 106674439 -175519225 + AluY SINE Alu 1 309 -2 647 279 116 44 chr1 106674648 106674967 -175518697 + L2 LINE L2 2972 3313 0 589 322 68 0 chr1 106675038 106675274 -175518390 + MIR SINE MIR 11 262 0 1914 153 0 27 chr1 106675627 106675927 -175517737 + AluJo SINE Alu 1 292 -20 495 209 0 4 chr1 106676031 106676156 -175517508 + L1ME3 LINE L1 5745 5867 -295 * 2464 192 109 40 chr1 106676155 106676852 -175516812 - L1ME3 LINE L1 -9 6153 5409 194 213 106 0 chr1 106677173 106677220 -175516444 + MIR SINE MIR 193 244 -18 42 20 0 0 chr1 106677221 106677270 -175516394 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 106677638 106677660 -175516004 + AT_rich Low_complexity Low_complexity 1 22 0 722 265 77 30 chr1 106678258 106678492 -175515172 + MIR SINE MIR 18 262 0 224 260 120 0 chr1 106678495 106678595 -175515069 + MIR SINE MIR 151 262 0 182 360 11 34 chr1 106679912 106680001 -175513663 - L2 LINE L2 -642 2672 2586 1990 111 55 7 chr1 106681231 106681520 -175512144 - AluSg SINE Alu -7 303 1 348 344 126 44 chr1 106682109 106682840 -175510824 + L2 LINE L2 2429 3225 -47 2159 141 96 10 chr1 106683104 106683488 -175510176 - MSTA LTR MaLR -11 417 1 9218 136 25 35 chr1 106683493 106685080 -175508584 - MSTA-int LTR MaLR -6 1574 4 2202 134 82 17 chr1 106685083 106685485 -175508179 - MSTA LTR MaLR 0 428 1 401 320 189 25 chr1 106685890 106686409 -175507255 + L2 LINE L2 1619 2222 -1092 281 287 0 32 chr1 106686415 106686509 -175507155 + CT-rich Low_complexity Low_complexity 4 94 0 928 228 84 39 chr1 106687340 106687756 -175505908 - L1MC5 LINE L1 -53 7908 7474 1981 131 38 0 chr1 106687880 106688170 -175505494 - AluSx SINE Alu -11 301 1 22 56 0 0 chr1 106688381 106688417 -175505247 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr1 106688704 106688737 -175504927 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr1 106688817 106688841 -175504823 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 2325 168 66 7 chr1 106688907 106689348 -175504316 - MLT1C LTR MaLR 0 467 1 709 254 71 38 chr1 106690404 106690644 -175503020 - MIR SINE MIR -2 260 13 936 227 81 22 chr1 106690658 106691081 -175502583 - L1MCc LINE L1 -4887 1536 1236 742 259 34 78 chr1 106691109 106691429 -175502235 - L1MCc LINE L1 -5384 1039 734 478 221 97 19 chr1 106691465 106691619 -175502045 - L1MCc LINE L1 -4320 2802 2637 * 1444 249 131 39 chr1 106691606 106692819 -175500845 - L1MCc LINE L1 -4805 2136 816 453 200 295 0 chr1 106693413 106693613 -175500051 - L1ME3A LINE L1 -7 6163 5905 280 255 16 54 chr1 106694044 106694228 -175499436 + CT-rich Low_complexity Low_complexity 3 179 0 318 268 110 69 chr1 106694228 106694519 -175499145 - L1M4c LINE L1 -5081 1303 1001 193 340 19 58 chr1 106694720 106694823 -175498841 - L2 LINE L2 -15 3298 3200 22 35 0 0 chr1 106695182 106695211 -175498453 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr1 106695469 106695498 -175498166 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 167 0 0 chr1 106695845 106695881 -175497783 + (CATA)n Simple_repeat Simple_repeat 2 37 0 2103 109 3 13 chr1 106697963 106698265 -175495399 - AluSx SINE Alu -1 311 13 22 35 0 0 chr1 106698323 106698352 -175495312 + AT_rich Low_complexity Low_complexity 1 29 0 772 196 0 0 chr1 106698967 106699100 -175494564 + FLAM_C SINE Alu 1 133 0 1141 187 15 0 chr1 106699113 106699316 -175494348 + AluJb SINE Alu 90 295 -17 395 262 19 19 chr1 106699704 106699807 -175493857 + L2 LINE L2 3211 3313 0 1749 112 49 3 chr1 106700487 106700773 -175492891 - L1MA2 LINE L1 0 6304 6006 21 36 0 0 chr1 106701031 106701059 -175492605 + AT_rich Low_complexity Low_complexity 1 28 0 199 280 27 27 chr1 106701165 106701240 -175492424 - MIR3 SINE MIR 0 208 134 807 125 0 0 chr1 106701257 106701369 -175492295 + AluSg/x SINE Alu 181 292 -18 5391 157 32 47 chr1 106701374 106701531 -175492133 - L1MA10 LINE L1 -8 6326 6168 911 107 0 30 chr1 106701531 106701700 -175491964 + (TTTC)n Simple_repeat Simple_repeat 4 167 0 5391 157 32 47 chr1 106701700 106702567 -175491097 - L1MA10 LINE L1 -166 6168 5290 2480 85 21 74 chr1 106702567 106702606 -175491058 - L1MA1 LINE L1 0 6302 6262 198 0 0 0 chr1 106702606 106702628 -175491036 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2083 106 3 3 chr1 106702628 106702910 -175490754 - AluSg SINE Alu -28 282 1 2480 85 21 74 chr1 106702910 106703303 -175490361 - L1MA1 LINE L1 -38 6264 5892 5391 157 32 47 chr1 106703303 106703510 -175490154 - L1MA10 LINE L1 -1044 5290 5111 258 254 42 0 chr1 106703568 106703639 -175490025 - Charlie2 DNA MER1_type -3 2859 2786 31 0 0 0 chr1 106704346 106704377 -175489287 + AT_rich Low_complexity Low_complexity 1 31 0 377 232 98 9 chr1 106704782 106704894 -175488770 + FLAM_A SINE Alu 1 122 -11 2331 139 6 117 chr1 106704957 106705426 -175488238 - MER47B DNA MER2_type -1 417 1 183 42 0 0 chr1 106705640 106705664 -175488000 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr1 106706979 106707012 -175486652 + AT_rich Low_complexity Low_complexity 1 33 0 30 69 0 0 chr1 106707497 106707555 -175486109 + AT_rich Low_complexity Low_complexity 1 58 0 2093 121 0 38 chr1 106708372 106708687 -175484977 - AluSx SINE Alu -9 303 1 2698 19 7 3 chr1 106709427 106709737 -175483927 - AluY SINE Alu 0 311 1 21 36 0 0 chr1 106709850 106709878 -175483786 + AT_rich Low_complexity Low_complexity 1 28 0 1743 188 0 3 chr1 106709923 106710221 -175483443 + AluJo SINE Alu 7 303 -9 347 309 74 118 chr1 106710431 106710954 -175482710 + L2 LINE L2 2564 3075 -197 186 43 0 0 chr1 106711089 106711112 -175482552 + (A)n Simple_repeat Simple_repeat 1 23 0 1449 303 115 33 chr1 106711366 106712323 -175481341 - L2 LINE L2 -86 3227 2189 1957 164 132 0 chr1 106712674 106713039 -175480625 - MSTA LTR MaLR -15 413 1 867 251 159 26 chr1 106713181 106713520 -175480144 - L2 LINE L2 -85 3228 2845 870 240 269 27 chr1 106713543 106713956 -175479708 - L2 LINE L2 -1037 2277 1765 1679 288 129 37 chr1 106713956 106714845 -175478819 - L2 LINE L2 -2032 1282 312 364 162 176 59 chr1 106715089 106715225 -175478439 - L1ME4a LINE L1 -4 6117 5966 204 40 0 0 chr1 106715510 106715535 -175478129 + (TG)n Simple_repeat Simple_repeat 1 25 0 2314 113 0 0 chr1 106716216 106716518 -175477146 + AluSg SINE Alu 1 302 -8 234 260 39 87 chr1 106717172 106717276 -175476388 + MIR SINE MIR 22 120 -142 543 216 20 0 chr1 106717647 106717749 -175475915 + MER81 DNA DNA 11 114 0 693 209 0 0 chr1 106717862 106717977 -175475687 - FLAM_A SINE Alu -18 115 1 25 65 0 0 chr1 106718376 106718422 -175475242 + AT_rich Low_complexity Low_complexity 1 46 0 861 133 0 30 chr1 106718593 106718728 -175474936 + FLAM_C SINE Alu 1 131 -2 39 0 0 0 chr1 106718882 106718921 -175474743 + AT_rich Low_complexity Low_complexity 1 39 0 1551 222 38 90 chr1 106719480 106720070 -175473594 - L2 LINE L2 -1 3312 2756 15438 63 8 3 chr1 106720096 106722932 -175470732 - L1PA10 LINE L1 0 6168 3326 19146 120 25 8 chr1 106722932 106725938 -175467726 - L1PA10 LINE L1 -3048 3098 41 1373 230 56 41 chr1 106726608 106727021 -175466643 - LTR16C LTR ERVL 0 491 73 2111 154 111 19 chr1 106727610 106728025 -175465639 + MLT1D LTR MaLR 8 460 -45 917 170 35 30 chr1 106728053 106728253 -175465411 + MIR SINE MIR 30 230 -32 1673 170 184 8 chr1 106728752 106729116 -175464548 + MSTA LTR MaLR 1 428 0 193 284 119 0 chr1 106729919 106729986 -175463678 - L2 LINE L2 0 3272 3198 399 220 18 107 chr1 106730082 106730250 -175463414 + MIR SINE MIR 60 212 -50 32 26 0 0 chr1 106730739 106730778 -175462886 + AT_rich Low_complexity Low_complexity 1 39 0 26 74 0 0 chr1 106731974 106732028 -175461636 + AT_rich Low_complexity Low_complexity 1 54 0 294 308 13 0 chr1 106732831 106732909 -175460755 + L2 LINE L2 3225 3303 -10 300 339 45 0 chr1 106732927 106733039 -175460625 + MIR SINE MIR 30 146 -62 407 293 136 14 chr1 106733309 106733449 -175460215 - MIR3 SINE MIR -18 190 34 2455 64 0 0 chr1 106734001 106734297 -175459367 - AluY SINE Alu -15 296 1 217 61 61 20 chr1 106734396 106734445 -175459219 + (CTTTA)n Simple_repeat Simple_repeat 2 52 0 299 347 118 68 chr1 106734566 106735120 -175458544 - L2 LINE L2 -36 3236 2641 1267 267 111 35 chr1 106735120 106735670 -175457994 - MLT1E LTR MaLR 0 593 2 299 347 118 68 chr1 106735670 106735880 -175457784 - L2 LINE L2 -631 2641 2443 339 343 49 0 chr1 106736219 106736321 -175457343 - L2 LINE L2 -2 3270 3164 227 239 239 0 chr1 106736603 106736670 -175456994 - MER5B DNA MER1_type -24 154 72 2470 51 0 29 chr1 106736770 106737083 -175456581 - AluY SINE Alu -7 304 1 2565 304 150 27 chr1 106738000 106739453 -175454211 - L2 LINE L2 -4 3309 1553 580 199 228 6 chr1 106739453 106739624 -175454040 + MER3 DNA MER1_type 1 209 0 2565 304 150 27 chr1 106739624 106740038 -175453626 - L2 LINE L2 -1760 1553 1192 504 117 32 75 chr1 106740050 106740238 -175453426 + (TA)n Simple_repeat Simple_repeat 1 180 0 215 311 60 25 chr1 106740301 106740411 -175453253 - MIR SINE MIR -97 111 2 567 332 70 16 chr1 106740881 106741137 -175452527 - L3 LINE CR1 -10 1567 1298 180 0 0 0 chr1 106741440 106741460 -175452204 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 486 229 33 25 chr1 106741940 106742062 -175451602 - MER97a DNA MER1_type? -375 519 397 1647 190 26 29 chr1 106742070 106742325 -175451339 - MER58B DNA MER1_type -2079 341 86 1990 56 8 4 chr1 106742325 106742577 -175451087 + AluY SINE Alu 1 253 -58 1647 190 26 29 chr1 106742577 106742663 -175451001 - MER58B DNA MER1_type -2334 86 1 1767 166 17 10 chr1 106743232 106743528 -175450136 + AluSx SINE Alu 1 298 -14 428 238 225 12 chr1 106743640 106743800 -175449864 - L2 LINE L2 -1 3312 3119 1029 236 37 0 chr1 106743877 106744093 -175449571 - MER58A DNA MER1_type 0 224 1 1752 184 0 7 chr1 106744171 106744476 -175449188 + AluJb SINE Alu 1 303 -9 2236 115 7 0 chr1 106744561 106744865 -175448799 + AluSq SINE Alu 1 306 -7 2061 128 0 10 chr1 106744865 106745161 -175448503 + AluY SINE Alu 1 293 -18 411 280 51 0 chr1 106745304 106745422 -175448242 + MER5C DNA MER1_type 1 124 -200 242 147 0 0 chr1 106745479 106745513 -175448151 + MER5C DNA MER1_type 291 324 0 204 280 200 10 chr1 106745519 106745619 -175448045 - MIR SINE MIR -87 175 57 472 273 79 0 chr1 106745931 106746070 -175447594 + MIR3 SINE MIR 42 191 -17 292 300 53 0 chr1 106746946 106747060 -175446604 - MIR SINE MIR -63 145 40 250 203 271 75 chr1 106747342 106747475 -175446189 + MIR SINE MIR 53 211 -51 235 289 52 89 chr1 106747626 106747761 -175445903 + MIR3 SINE MIR 30 159 -49 328 318 47 28 chr1 106748337 106748444 -175445220 - L2 LINE L2 -11 3261 3153 316 322 40 23 chr1 106748479 106748656 -175445008 + MIR SINE MIR 57 236 -26 285 311 67 80 chr1 106749507 106749883 -175443781 + L2 LINE L2 2584 2954 -360 236 272 180 53 chr1 106749924 106750130 -175443534 + L2 LINE L2 3080 3311 -2 1172 286 45 83 chr1 106750319 106751038 -175442626 - MER21B LTR ERV1 -149 714 24 1803 111 44 0 chr1 106751044 106751322 -175442342 - AluSx SINE Alu 0 311 23 26 30 0 0 chr1 106751794 106751827 -175441837 + AT_rich Low_complexity Low_complexity 1 33 0 2066 99 21 133 chr1 106753113 106753535 -175440129 + THE1C LTR MaLR 1 375 0 411 181 94 19 chr1 106754461 106754584 -175439080 + L1ME4a LINE L1 1199 6083 -16 2434 67 0 22 chr1 106754719 106755034 -175438630 + AluY SINE Alu 1 308 -3 998 228 56 16 chr1 106756079 106756405 -175437259 - L1MB8 LINE L1 0 6178 5841 901 298 166 12 chr1 106756865 106757503 -175436161 + L2 LINE L2 2583 3313 0 922 216 22 0 chr1 106758168 106758349 -175435315 + MER5A DNA MER1_type 3 187 -2 2323 101 0 3 chr1 106759181 106759489 -175434175 - AluSq SINE Alu -6 307 1 1617 35 0 15 chr1 106759523 106759721 -175433943 - MER107 DNA MER1_type 0 197 3 192 275 275 11 chr1 106759727 106759818 -175433846 + MIR SINE MIR 20 134 -74 551 238 35 21 chr1 106760260 106760403 -175433261 + HsTC2 DNA Tc2 4 148 -1750 620 258 25 18 chr1 106760463 106760815 -175432849 + HsTC2 DNA Tc2 1300 1761 -137 290 200 18 0 chr1 106761433 106761488 -175432176 - Charlie1 DNA MER1_type 0 2761 2706 11074 135 31 3 chr1 106761576 106763359 -175430305 - Tigger1 DNA MER2_type 0 2418 586 2060 102 0 0 chr1 106763359 106763625 -175430039 + AluY SINE Alu 1 266 -45 1429 164 29 0 chr1 106763798 106764042 -175429622 + AluJo SINE Alu 44 294 -18 2225 97 0 10 chr1 106764107 106764406 -175429258 + AluY SINE Alu 1 296 -15 1408 123 209 55 chr1 106765013 106765305 -175428359 - MER1B DNA MER1_type 0 337 1 1450 267 72 42 chr1 106765362 106765984 -175427680 + L1MC4 LINE L1 7398 8038 -4 2259 121 0 0 chr1 106765984 106766281 -175427383 + AluSx SINE Alu 1 297 -15 29 47 0 0 chr1 106767778 106767821 -175425843 + AT_rich Low_complexity Low_complexity 1 43 0 249 274 32 0 chr1 106769387 106769449 -175424215 - MIR SINE MIR -6 256 193 193 278 0 56 chr1 106770600 106770654 -175423010 + L2 LINE L2 3222 3272 0 512 266 16 49 chr1 106771246 106771430 -175422234 - L2 LINE L2 -5 3308 3131 1545 234 68 67 chr1 106771487 106771912 -175421752 - L2 LINE L2 -1178 2136 1708 893 98 0 0 chr1 106771912 106772035 -175421629 - L1PB4 LINE L1 -13 6143 6021 1545 234 68 67 chr1 106772035 106772164 -175421500 - L2 LINE L2 -1606 1708 1581 204 235 0 0 chr1 106772933 106772984 -175420680 + T-rich Low_complexity Low_complexity 1 51 0 2385 97 0 0 chr1 106773319 106773628 -175420036 - AluSc SINE Alu 0 309 1 207 0 0 0 chr1 106773631 106773654 -175420010 + (T)n Simple_repeat Simple_repeat 1 23 0 2183 120 0 13 chr1 106775536 106775852 -175417812 - AluSq SINE Alu -1 312 1 576 299 31 31 chr1 106776247 106776441 -175417223 - MIR3 SINE MIR -12 196 3 231 36 0 0 chr1 106777235 106777263 -175416401 + (A)n Simple_repeat Simple_repeat 1 28 0 194 119 179 60 chr1 106777374 106777441 -175416223 - MIR SINE MIR -10 252 178 415 227 92 17 chr1 106777498 106777617 -175416047 - MIR SINE MIR -70 192 65 23 33 0 0 chr1 106778922 106778952 -175414712 + AT_rich Low_complexity Low_complexity 1 30 0 261 75 0 0 chr1 106781172 106781212 -175412452 + (A)n Simple_repeat Simple_repeat 1 40 0 1519 215 73 78 chr1 106782348 106783159 -175410505 + L1ME1 LINE L1 772 1546 -4860 * 2090 228 118 18 chr1 106783134 106783922 -175409742 + L1ME1 LINE L1 4817 5771 -655 2215 104 3 3 chr1 106783922 106784219 -175409445 + AluSp SINE Alu 1 297 -16 2090 228 118 18 chr1 106784219 106784570 -175409094 + L1ME1 LINE L1 5771 6086 -340 250 209 45 15 chr1 106784572 106784639 -175409025 + L1MD2 LINE L1 6019 6087 -272 469 271 43 32 chr1 106784970 106785250 -175408414 - L1ME LINE L1 -4832 1146 864 333 144 56 44 chr1 106785369 106785459 -175408205 - L1ME LINE L1 -5301 769 679 499 273 32 97 chr1 106785758 106786069 -175407595 - L1ME LINE L1 -5539 531 241 420 263 85 0 chr1 106786126 106786244 -175407420 - L1ME LINE L1 -5940 130 3 1999 123 0 20 chr1 106786359 106786687 -175406977 + AluSx SINE Alu 1 312 0 1748 111 119 32 chr1 106787811 106788155 -175405509 - THE1C LTR MaLR -1 374 1 1932 150 7 3 chr1 106789303 106789597 -175404067 + AluJb SINE Alu 3 297 -15 1699 137 43 47 chr1 106789608 106789908 -175403756 + AluJb SINE Alu 1 299 -13 2106 104 0 4 chr1 106791064 106791343 -175402321 + AluSg SINE Alu 1 278 -32 516 16 0 0 chr1 106791347 106791408 -175402256 + (TA)n Simple_repeat Simple_repeat 1 61 0 1347 143 128 36 chr1 106791470 106791560 -175402104 - Charlie5 DNA MER1_type 0 2624 2544 2202 89 7 10 chr1 106791560 106791851 -175401813 - AluSg1 SINE Alu -19 290 1 1347 143 128 36 chr1 106791851 106792118 -175401546 - Charlie5 DNA MER1_type -80 2544 2234 620 148 46 0 chr1 106792120 106792228 -175401436 - MER3 DNA MER1_type -47 162 50 386 214 58 10 chr1 106792246 106792349 -175401315 - MIR SINE MIR -109 153 46 2054 122 31 0 chr1 106792350 106792636 -175401028 - AluSx SINE Alu -17 295 1 270 233 67 0 chr1 106792665 106792725 -175400939 - L2 LINE L2 0 3272 3209 312 345 34 8 chr1 106793429 106793548 -175400116 - L2 LINE L2 0 3272 3151 248 333 39 0 chr1 106794341 106794419 -175399245 + L2 LINE L2 3188 3268 -4 2425 81 0 0 chr1 106795177 106795474 -175398190 - AluY SINE Alu -14 297 1 1982 152 67 0 chr1 106796276 106796619 -175397045 + MER47A DNA MER2_type 1 366 0 1693 139 43 101 chr1 106796670 106797038 -175396626 + MLT2C1 LTR ERVL 1 347 -50 1616 171 75 6 chr1 106797090 106797411 -175396253 + MER2 DNA MER2_type 1 343 -1 272 345 55 29 chr1 106797450 106797555 -175396109 + L2 LINE L2 2148 2249 -1065 2588 59 0 0 chr1 106797555 106797862 -175395802 - AluY SINE Alu -4 307 1 272 345 55 29 chr1 106797862 106798066 -175395598 + L2 LINE L2 2249 2465 -849 1872 187 75 27 chr1 106798111 106798550 -175395114 + MLT1C LTR MaLR 8 467 0 612 180 9 0 chr1 106798618 106798729 -175394935 - FLAM_C SINE Alu -8 135 24 195 369 47 7 chr1 106798826 106798975 -175394689 + L2 LINE L2 2132 2286 -1028 585 237 41 35 chr1 106799060 106799229 -175394435 - MIR SINE MIR -44 218 49 921 178 57 0 chr1 106799397 106799554 -175394110 + FRAM SINE Alu 1 162 -14 266 335 72 67 chr1 106799865 106800211 -175393453 - L2 LINE L2 -632 2682 2335 21 36 0 0 chr1 106800428 106800456 -175393208 + AT_rich Low_complexity Low_complexity 1 28 0 180 319 121 11 chr1 106801250 106801341 -175392323 - MIR3 SINE MIR -21 187 87 537 265 153 14 chr1 106801343 106801558 -175392106 - MIR SINE MIR -10 252 8 1958 142 33 35 chr1 106801608 106801975 -175391689 + THE1C LTR MaLR 1 366 -9 267 31 0 0 chr1 106801975 106802007 -175391657 + (CTA)n Simple_repeat Simple_repeat 3 34 0 316 323 97 58 chr1 106802046 106802201 -175391463 + L2 LINE L2 3112 3272 0 769 255 55 13 chr1 106802420 106802730 -175390934 - L1MEc LINE L1 -2896 3319 2997 866 199 6 6 chr1 106802734 106802895 -175390769 - AluJb SINE Alu -24 288 128 2774 224 98 68 chr1 106802895 106804536 -175389128 - L1MEc LINE L1 -3216 2999 1345 2028 190 8 3 chr1 106804610 106804973 -175388691 - MLT1A1 LTR MaLR 0 365 1 235 210 57 73 chr1 106805006 106805130 -175388534 - MER69 DNA AcHobo -375 2151 2030 * 1768 284 27 21 chr1 106805119 106805388 -175388276 - MER69 DNA AcHobo -2006 520 245 1648 208 3 10 chr1 106805388 106805700 -175387964 - AluJo SINE Alu -2 310 1 1768 284 27 21 chr1 106805700 106805947 -175387717 - MER69 DNA AcHobo -2281 245 1 1890 100 4 0 chr1 106806225 106806475 -175387189 + AluY SINE Alu 1 251 -60 228 67 0 0 chr1 106806477 106806507 -175387157 + (A)n Simple_repeat Simple_repeat 1 30 0 1804 240 80 35 chr1 106806844 106807493 -175386171 + L1ME2 LINE L1 5297 6048 -116 1755 159 17 24 chr1 106807493 106807789 -175385875 - AluJb SINE Alu -18 294 1 1804 240 80 35 chr1 106807789 106807877 -175385787 + L1ME2 LINE L1 6048 6131 -33 1918 160 21 0 chr1 106807878 106808216 -175385448 + L1PA16 LINE L1 5806 6150 -16 470 349 32 11 chr1 106808604 106808793 -175384871 - MIR SINE MIR -49 213 21 387 0 0 0 chr1 106809723 106809766 -175383898 + (TG)n Simple_repeat Simple_repeat 1 43 0 191 265 103 29 chr1 106809804 106809872 -175383792 - MIR SINE MIR -188 74 2 866 128 40 0 chr1 106811234 106811382 -175382282 - L1P LINE L1 -788 5358 5205 362 23 0 0 chr1 106811564 106811607 -175382057 - MER85 DNA T2_type -96 43 1 238 319 14 0 chr1 106811907 106811976 -175381688 - L2 LINE L2 -2 3270 3201 257 216 0 0 chr1 106812041 106812092 -175381572 + L2 LINE L2 3263 3313 0 312 316 79 26 chr1 106812163 106812277 -175381387 + L2 LINE L2 3153 3272 0 682 175 67 0 chr1 106914139 106914259 -175279405 - FLAM_C SINE Alu -5 128 1 2118 142 0 3 chr1 106914969 106915280 -175278384 - AluSx SINE Alu -2 310 1 343 113 42 28 chr1 106915503 106915574 -175278090 - MER69 DNA AcHobo -4 2522 2451 232 71 143 0 chr1 106915571 106915613 -175278051 - MER69 DNA AcHobo -2380 146 99 * 691 191 136 10 chr1 106915668 106915867 -175277797 + MIR SINE MIR 3 226 -36 2178 122 10 0 chr1 106917483 106917779 -175275885 - AluSx SINE Alu -13 299 1 2131 139 0 3 chr1 106917870 106918180 -175275484 - AluSx SINE Alu -3 309 1 2277 101 3 7 chr1 106919053 106919361 -175274303 + AluSp SINE Alu 1 307 -6 377 293 162 6 chr1 106919545 106919712 -175273952 - MIR SINE MIR -57 205 13 195 288 55 0 chr1 106919870 106919943 -175273721 - L2 LINE L2 -1347 1967 1891 1392 91 0 6 chr1 106920007 106920183 -175273481 - AluJb SINE Alu -52 260 86 1305 152 28 14 chr1 106921290 106921507 -175272157 + AluJo SINE Alu 83 302 -10 573 274 40 73 chr1 106922737 106923091 -175270573 - L3 LINE CR1 -220 1357 1016 1981 102 44 41 chr1 106924491 106924784 -175268880 - AluSq SINE Alu -19 294 1 1720 159 51 0 chr1 106924792 106925068 -175268596 - AluJb SINE Alu -22 290 1 195 241 0 0 chr1 106925555 106925609 -175268055 - L2 LINE L2 -307 2965 2912 226 167 42 21 chr1 106926222 106926270 -175267394 + L2 LINE L2 3179 3227 -86 658 189 21 95 chr1 106927134 106927379 -175266285 - MER106B DNA MER1_type 0 236 1 1559 189 10 16 chr1 106927399 106927706 -175265958 - AluJo SINE Alu -7 305 1 27 0 0 0 chr1 106927711 106927738 -175265926 + AT_rich Low_complexity Low_complexity 1 27 0 2221 101 0 0 chr1 106927752 106928038 -175265626 + AluSx SINE Alu 25 310 -2 2419 88 0 0 chr1 106928680 106928986 -175264678 - AluY SINE Alu -1 310 5 222 249 8 21 chr1 106929487 106929566 -175264098 - MIR SINE MIR -122 86 8 2292 100 0 0 chr1 106930285 106930576 -175263088 + AluSx SINE Alu 1 291 -21 624 143 0 0 chr1 106930708 106930806 -175262858 + AluJ/FLAM SINE Alu 2 99 -213 1651 181 11 0 chr1 106931821 106932097 -175261567 - AluJo SINE Alu -30 282 4 27 49 0 0 chr1 106932195 106932236 -175261428 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr1 106935151 106935179 -175258485 + AT_rich Low_complexity Low_complexity 1 28 0 2329 114 0 0 chr1 106935189 106935496 -175258168 - AluSx SINE Alu -5 307 1 786 199 0 0 chr1 106935498 106935629 -175258035 - AluJo/FLAM SINE Alu -180 132 2 397 249 90 23 chr1 106936158 106936335 -175257329 + L1ME4a LINE L1 5922 6110 -11 192 276 114 67 chr1 106937888 106937993 -175255671 - MIR SINE MIR -62 146 37 195 42 0 0 chr1 106938875 106938899 -175254765 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr1 106939278 106939305 -175254359 + AT_rich Low_complexity Low_complexity 1 27 0 261 219 73 49 chr1 106940264 106940346 -175253318 + MER5B DNA MER1_type 94 177 -1 270 323 10 0 chr1 106940539 106940638 -175253026 - L2 LINE L2 -241 3031 2932 970 183 12 0 chr1 106940831 106941000 -175252664 + FAM SINE Alu 1 171 -4 781 174 161 11 chr1 106941507 106941774 -175251890 - LTR49 LTR ERV1 -1 594 434 963 166 99 71 chr1 106941794 106942047 -175251617 - LTR29 LTR ERV1 -360 262 3 2158 111 0 0 chr1 106942175 106942455 -175251209 - AluSx SINE Alu -30 282 3 1471 75 27 0 chr1 106942710 106942896 -175250768 + AluSp SINE Alu 109 299 -14 2294 107 0 0 chr1 106944347 106944637 -175249027 - AluSx SINE Alu -22 290 1 285 219 333 0 chr1 106944810 106944933 -175248731 + MIR SINE MIR 88 251 -11 994 144 19 0 chr1 106945416 106945576 -175248088 - AluSg/x SINE Alu -13 299 137 2393 84 3 10 chr1 106946128 106946436 -175247228 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr1 106946520 106946541 -175247123 + AT_rich Low_complexity Low_complexity 1 21 0 291 308 100 0 chr1 106946593 106946723 -175246941 - L1ME LINE L1 -371 5750 5608 270 0 0 0 chr1 106946723 106946753 -175246911 + (TG)n Simple_repeat Simple_repeat 1 30 0 2010 122 14 10 chr1 106947217 106947349 -175246315 + AluSg SINE Alu 1 131 -179 252 86 0 0 chr1 106947349 106947384 -175246280 + (TA)n Simple_repeat Simple_repeat 1 35 0 2010 122 14 10 chr1 106947384 106947547 -175246117 + AluSg SINE Alu 131 297 -13 22 0 0 0 chr1 106947975 106947997 -175245667 + AT_rich Low_complexity Low_complexity 1 22 0 845 201 29 29 chr1 106948052 106948261 -175245403 + MIR SINE MIR 8 216 -46 364 236 178 32 chr1 106950346 106950503 -175243161 - MIR SINE MIR 0 262 83 1957 107 75 0 chr1 106950941 106951221 -175242443 - AluSx SINE Alu -11 301 1 718 280 128 25 chr1 106952131 106952531 -175241133 - HAL1b LINE L1 -17 1331 891 1707 173 7 23 chr1 106952659 106952966 -175240698 - AluJb SINE Alu -10 302 1 198 344 146 0 chr1 106953255 106953406 -175240258 - MIR3 SINE MIR -15 193 21 409 270 56 34 chr1 106953934 106954112 -175239552 + MIR SINE MIR 70 251 -11 2275 76 3 45 chr1 106954142 106954456 -175239208 - AluSc SINE Alu -7 302 2 2499 68 0 0 chr1 106954466 106954762 -175238902 - AluY SINE Alu -15 296 1 646 222 0 0 chr1 106955132 106955258 -175238406 - FLAM_A SINE Alu -3 130 5 1082 185 59 23 chr1 106955270 106955554 -175238110 - L1MB2 LINE L1 0 6171 5887 3507 167 40 50 chr1 106955714 106956316 -175237348 - L1MB2 LINE L1 -248 5923 5316 2497 97 0 0 chr1 106956316 106956627 -175237037 - AluY SINE Alu 0 311 1 2490 92 0 0 chr1 106956627 106956933 -175236731 - AluSg SINE Alu -4 306 1 3507 167 40 50 chr1 106956933 106957516 -175236148 - L1MB2 LINE L1 -853 5318 4743 188 86 29 0 chr1 106957905 106957940 -175235724 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2463 42 7 3 chr1 106957943 106958232 -175235432 - AluY SINE Alu -21 290 1 218 255 153 20 chr1 106960719 106960817 -175232847 + MIR3 SINE MIR 64 174 -34 391 224 128 45 chr1 106961339 106961518 -175232146 + MIR SINE MIR 62 255 -7 223 313 131 10 chr1 106963480 106963579 -175230085 - MIR3 SINE MIR -32 176 66 2331 92 20 0 chr1 106963789 106964093 -175229571 + AluSp SINE Alu 1 310 -3 309 212 254 42 chr1 106965068 106965186 -175228478 + MIR SINE MIR 9 151 -111 2120 112 10 10 chr1 106965214 106965517 -175228147 + AluSq SINE Alu 11 313 0 201 283 167 40 chr1 106966328 106966526 -175227138 - L3b LINE CR1 -120 1463 1241 22 0 0 0 chr1 106968100 106968122 -175225542 + AT_rich Low_complexity Low_complexity 1 22 0 1368 216 27 27 chr1 106968363 106968701 -175224963 + MER58B DNA MER1_type 4 341 0 408 281 130 11 chr1 106974120 106974305 -175219359 - L3b LINE CR1 -186 1397 1191 2165 238 120 63 chr1 106974659 106976878 -175216786 - HAL1 LINE L1 -1 2506 62 2153 86 4 7 chr1 106977195 106977511 -175216153 + AluSc SINE Alu 1 315 0 250 26 0 103 chr1 106978061 106978073 -175215591 - MER41A LTR ERV1 -122 432 420 2450 80 0 3 chr1 106978073 106978375 -175215289 + AluSc SINE Alu 1 301 -8 250 26 0 103 chr1 106978375 106978401 -175215263 - MER41A LTR ERV1 -134 420 398 208 326 0 94 chr1 106979110 106979154 -175214510 - MIR SINE MIR -118 144 97 2142 134 0 3 chr1 106979154 106979459 -175214205 + AluSx SINE Alu 1 304 -8 208 326 0 94 chr1 106979459 106979552 -175214112 - MIR SINE MIR -165 97 20 369 285 30 80 chr1 106979769 106979969 -175213695 + MIR SINE MIR 44 233 -29 252 0 0 0 chr1 106981281 106981309 -175212355 + (CTGGGG)n Simple_repeat Simple_repeat 4 31 0 464 187 12 111 chr1 106981309 106981480 -175212184 - MER20 DNA MER1_type -65 154 1 224 209 0 30 chr1 106982032 106982099 -175211565 + L2 LINE L2 2162 2226 -1088 188 296 23 0 chr1 106982233 106982277 -175211387 - L2 LINE L2 -15 3257 3213 2731 268 195 18 chr1 106982375 106984094 -175209570 + L2 LINE L2 1282 3313 0 383 250 83 69 chr1 106984716 106984920 -175208744 + L2 LINE L2 3106 3312 -1 1466 166 101 11 chr1 106986147 106986424 -175207240 + AluJb SINE Alu 11 312 0 2452 64 0 3 chr1 106987941 106988238 -175205426 - AluY SINE Alu -15 296 1 227 361 80 17 chr1 106988288 106988526 -175205138 + MIR SINE MIR 4 256 -6 1068 308 90 7 chr1 106988609 106989074 -175204590 + MLT1J LTR MaLR 5 508 -3 203 182 18 36 chr1 106989529 106989584 -175204080 + MER5C DNA MER1_type 1 54 -270 355 275 22 10 chr1 106989779 106989914 -175203750 + MER5B DNA MER1_type 51 178 0 2419 88 0 0 chr1 106990021 106990318 -175203346 - AluSg SINE Alu -13 297 1 231 328 46 38 chr1 106991049 106991180 -175202484 - L2 LINE L2 -4 3268 3137 530 323 82 19 chr1 106991334 106991970 -175201694 + L2 LINE L2 1665 2433 -881 210 133 22 44 chr1 106992295 106992340 -175201324 + (CACCC)n Simple_repeat Simple_repeat 5 48 0 1942 163 41 15 chr1 106994890 106995228 -175198436 + MER7A DNA MER2_type 2 346 0 2240 138 0 0 chr1 106995595 106995942 -175197722 + AluJb SINE Alu 1 347 0 277 277 69 10 chr1 106995959 106996060 -175197604 + MIR3 SINE MIR 77 183 -25 2346 103 0 3 chr1 106996496 106996808 -175196856 + AluSx SINE Alu 1 311 -1 489 248 160 29 chr1 106997084 106997290 -175196374 + MIR SINE MIR 28 260 -2 2631 173 36 12 chr1 106998734 106999238 -175194426 - L1MA9 LINE L1 -30 6282 5767 1933 153 17 0 chr1 106999248 106999549 -175194115 - AluJb SINE Alu -4 308 3 1487 172 54 84 chr1 107000600 107000886 -175192778 - L1MD3 LINE L1 0 7995 7702 966 137 0 0 chr1 107000886 107001017 -175192647 - FLAM_C SINE Alu -12 131 1 1487 172 54 84 chr1 107001017 107001305 -175192359 - L1MD3 LINE L1 -293 7702 7187 467 143 78 0 chr1 107001308 107001385 -175192279 - MLT1F1 LTR MaLR -448 119 37 2313 98 7 0 chr1 107001402 107001697 -175191967 + AluSx SINE Alu 3 299 -13 195 100 0 0 chr1 107001716 107001746 -175191918 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1174 201 162 16 chr1 107001746 107002049 -175191615 - L1MD3 LINE L1 -959 7036 6690 657 195 226 49 chr1 107002131 107002357 -175191307 - L1MC4a LINE L1 -1392 6416 6159 26 0 0 0 chr1 107003189 107003215 -175190449 + AT_rich Low_complexity Low_complexity 1 26 0 1739 170 25 0 chr1 107003216 107003493 -175190171 - AluJo SINE Alu -28 284 1 394 267 42 0 chr1 107003865 107003985 -175189679 - L1ME2 LINE L1 -1 6163 6039 2091 102 28 7 chr1 107004008 107004293 -175189371 - AluSq SINE Alu -22 291 1 537 234 190 5 chr1 107005140 107005324 -175188340 + MIR SINE MIR 44 261 -1 2248 96 0 7 chr1 107005674 107005966 -175187698 + AluSc SINE Alu 1 290 -19 351 233 151 87 chr1 107006134 107006353 -175187311 - MER112 DNA MER1_type 0 260 28 253 288 110 0 chr1 107006642 107006715 -175186949 - L2 LINE L2 -5 3267 3187 1798 97 9 130 chr1 107006887 107007226 -175186438 - AluSx SINE Alu -4 298 1 240 244 104 37 chr1 107007444 107007579 -175186085 + L2 LINE L2 3169 3312 -1 2501 127 59 35 chr1 107009533 107009572 -175184092 - L1MB3 LINE L1 -7 6176 6139 2026 110 46 3 chr1 107009572 107009854 -175183810 - AluSg SINE Alu -11 299 6 2501 127 59 35 chr1 107009854 107010272 -175183392 - L1MB3 LINE L1 -44 6139 5708 2193 112 7 0 chr1 107010601 107010905 -175182759 + AluY SINE Alu 1 306 -5 575 268 62 16 chr1 107011265 107011459 -175182205 - MIR SINE MIR -55 207 5 218 217 0 0 chr1 107012124 107012170 -175181494 + T-rich Low_complexity Low_complexity 1 46 0 592 137 11 0 chr1 107013218 107013313 -175180351 - AluJo SINE Alu -178 134 39 30 0 0 0 chr1 107015387 107015417 -175178247 + AT_rich Low_complexity Low_complexity 1 30 0 360 111 0 0 chr1 107015851 107015905 -175177759 + (CTGGGG)n Simple_repeat Simple_repeat 2 55 0 361 235 68 30 chr1 107016311 107016443 -175177221 - MIR SINE MIR -105 157 21 1602 219 105 8 chr1 107017653 107018054 -175175610 + L1ME1 LINE L1 5722 6161 -5 508 268 121 83 chr1 107018590 107018687 -175174977 + L1MEc LINE L1 2146 2238 -3977 682 197 171 80 chr1 107018687 107018926 -175174738 - MIR SINE MIR 0 262 2 508 268 121 83 chr1 107018926 107019540 -175174124 + L1MEc LINE L1 2238 2831 -3384 725 224 31 19 chr1 107019577 107019684 -175173980 + MLT1E LTR MaLR 1 112 -481 1317 182 104 118 chr1 107019684 107020211 -175173453 + MLT2B1 LTR ERVL 1 520 0 725 224 31 19 chr1 107020211 107020264 -175173400 + MLT1E LTR MaLR 112 163 -430 658 178 42 0 chr1 107020274 107020392 -175173272 + MLT1E LTR MaLR 471 593 0 2465 123 80 5 chr1 107020397 107020795 -175172869 - MSTA LTR MaLR 0 428 1 588 256 144 13 chr1 107020858 107021233 -175172431 + L1MEc LINE L1 2923 3346 -2869 321 317 60 44 chr1 107021251 107021617 -175172047 + L1MEc LINE L1 3393 3764 -2451 21 36 0 0 chr1 107021664 107021692 -175171972 + AT_rich Low_complexity Low_complexity 1 28 0 306 253 96 27 chr1 107021805 107021951 -175171713 + MER110 LTR ERV1 201 356 -135 791 218 42 57 chr1 107021954 107022216 -175171448 + L1MC5 LINE L1 6923 7180 -781 1334 218 64 74 chr1 107022310 107022902 -175170762 + L1MC5 LINE L1 7336 7921 -40 1820 165 90 63 chr1 107022923 107023402 -175170262 - LTR22B LTR ERVK 0 492 1 202 214 0 0 chr1 107024689 107024731 -175168933 - L2 LINE L2 -5 3267 3226 257 338 15 0 chr1 107024860 107024993 -175168671 - L2 LINE L2 -224 3048 2914 2296 120 0 0 chr1 107025314 107025613 -175168051 - AluSx SINE Alu -13 299 1 2413 97 0 0 chr1 107026021 107026320 -175167344 - AluSx SINE Alu -13 299 1 1411 148 18 0 chr1 107026484 107026707 -175166957 + L1PA16 LINE L1 5933 6159 -7 656 174 9 0 chr1 107026708 107026823 -175166841 + FLAM_C SINE Alu 2 117 -26 31 26 0 0 chr1 107026832 107026870 -175166794 + AT_rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr1 107027511 107027536 -175166128 + (TG)n Simple_repeat Simple_repeat 2 27 0 1966 117 67 0 chr1 107028075 107028358 -175165306 - AluSg SINE Alu -8 302 1 2146 100 7 7 chr1 107028431 107028722 -175164942 - AluSc SINE Alu -18 291 1 496 175 0 12 chr1 107028963 107029043 -175164621 - LTR35 LTR ERV1 0 618 540 423 172 11 11 chr1 107029171 107029258 -175164406 - LTR43 LTR ERV1 -325 277 191 216 250 0 21 chr1 107029536 107029584 -175164080 + polypurine Low_complexity Low_complexity 5 51 0 274 306 108 0 chr1 107029637 107029748 -175163916 + MIR3 SINE MIR 77 199 -9 330 236 79 42 chr1 107029772 107029937 -175163727 + L1M4 LINE L1 3095 3265 -2881 274 235 0 25 chr1 107030016 107030097 -175163567 + T-rich Low_complexity Low_complexity 5 83 0 1924 142 3 20 chr1 107030318 107030614 -175163050 - AluJo SINE Alu -21 291 1 500 286 19 16 chr1 107030896 107031056 -175162608 + MIR SINE MIR 22 178 -65 2024 114 26 0 chr1 107031116 107031388 -175162276 - AluSx SINE Alu -25 287 9 241 260 80 10 chr1 107031647 107031747 -175161917 + MER5A DNA MER1_type 39 145 -44 533 46 15 0 chr1 107032106 107032171 -175161493 + MLT1B LTR MaLR 1 66 -324 378 230 0 0 chr1 107032330 107032404 -175161260 + MLT1B LTR MaLR 81 154 -236 280 271 14 0 chr1 107033928 107033998 -175159666 - MER96 DNA MER1_type? -104 71 1 22 35 0 0 chr1 107034779 107034808 -175158856 + AT_rich Low_complexity Low_complexity 1 29 0 508 249 131 46 chr1 107035471 107035572 -175158092 + MIR SINE MIR 3 94 -168 2347 116 0 0 chr1 107035572 107035883 -175157781 - AluSx SINE Alu -1 311 1 508 249 131 46 chr1 107035883 107036018 -175157646 + MIR SINE MIR 94 259 -3 285 265 92 78 chr1 107036270 107036564 -175157100 + L1ME4a LINE L1 5588 5885 -236 285 254 90 8 chr1 107036605 107036727 -175156937 + L1ME4a LINE L1 5959 6090 -31 346 200 56 11 chr1 107037264 107037354 -175156310 - L1ME4a LINE L1 -37 6084 5991 476 305 75 13 chr1 107037393 107037619 -175156045 - MIR SINE MIR -6 256 17 340 304 104 21 chr1 107037667 107038057 -175155607 - L1ME4a LINE L1 -196 5925 5502 323 283 155 40 chr1 107038059 107038118 -175155546 + MER112 DNA MER1_type 2 53 -207 297 0 0 0 chr1 107038118 107038151 -175155513 + (CA)n Simple_repeat Simple_repeat 2 34 0 323 283 155 40 chr1 107038151 107038317 -175155347 + MER112 DNA MER1_type 53 253 -7 196 258 109 78 chr1 107038919 107039047 -175154617 + L2 LINE L2 2286 2417 -897 1061 219 164 12 chr1 107039255 107039511 -175154153 - AluSc SINE Alu -2 297 3 262 206 190 7 chr1 107039892 107039972 -175153692 + MIR SINE MIR 86 175 -33 2346 101 0 7 chr1 107041904 107042210 -175151454 + AluSx SINE Alu 1 304 -8 575 253 81 11 chr1 107042612 107042786 -175150878 - MIR SINE MIR -32 230 45 343 60 20 0 chr1 107045136 107045186 -175148478 - MADE1 DNA Mariner 0 80 30 2908 233 81 15 chr1 107045195 107045978 -175147686 - L1MB8 LINE L1 -32 6146 5308 2189 127 0 13 chr1 107045978 107046285 -175147379 - AluSx SINE Alu -9 303 1 2908 233 81 15 chr1 107046285 107046300 -175147364 - L1MB8 LINE L1 -870 5308 5295 5544 146 32 8 chr1 107046341 107047578 -175146086 - L1MA4 LINE L1 -97 6203 4943 2717 196 53 19 chr1 107047579 107048354 -175145310 - L1MB8 LINE L1 -838 5672 4617 4928 231 41 13 chr1 107048355 107049677 -175143987 - L1ME4a LINE L1 -878 5268 3910 6105 187 27 29 chr1 107049681 107050458 -175143206 - ERVL LTR ERVL -2917 2847 2070 1628 161 0 15 chr1 107050458 107050732 -175142932 + AluJb SINE Alu 6 275 -37 180 0 0 0 chr1 107050739 107050759 -175142905 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 6105 187 27 29 chr1 107050759 107051144 -175142520 - ERVL LTR ERVL -3700 2064 1679 2570 133 64 7 chr1 107051148 107051553 -175142111 - MSTA LTR MaLR 0 428 1 2369 84 0 7 chr1 107051930 107052238 -175141426 + AluY SINE Alu 1 306 -5 322 327 26 45 chr1 107052902 107053058 -175140606 + L2 LINE L2 2893 3045 -227 363 263 12 53 chr1 107053337 107053508 -175140156 + HAL1b LINE L1 746 909 -439 282 242 62 75 chr1 107053558 107053719 -175139945 + HAL1 LINE L1 2266 2424 -83 1862 179 46 46 chr1 107054386 107054776 -175138888 - MLT1B LTR MaLR 0 390 1 1959 140 20 128 chr1 107055118 107055524 -175138140 + MLT1A1 LTR MaLR 2 363 -2 725 299 90 51 chr1 107056293 107056870 -175136794 - L2 LINE L2 0 3272 2719 2261 110 0 0 chr1 107056870 107057162 -175136502 + AluSx SINE Alu 6 297 -15 725 299 90 51 chr1 107057162 107057642 -175136022 - L2 LINE L2 -553 2719 2164 408 198 16 79 chr1 107057634 107057760 -175135904 - MIR SINE MIR -74 134 17 * 487 316 20 20 chr1 107059238 107059390 -175134274 - L3 LINE CR1 -39 1538 1387 231 214 60 83 chr1 107059529 107059613 -175134051 - MER9 LTR ERVK -375 136 55 212 239 22 0 chr1 107060012 107060058 -175133606 + L2 LINE L2 3267 3313 0 2931 214 47 44 chr1 107060473 107061540 -175132124 + L1MEc LINE L1 2092 3155 -3060 1631 168 31 62 chr1 107061540 107061861 -175131803 + AluJo SINE Alu 1 311 -1 2931 214 47 44 chr1 107061861 107061903 -175131761 + L1MEc LINE L1 3155 3164 -3051 1111 59 5 43 chr1 107061903 107062089 -175131575 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2931 214 47 44 chr1 107062089 107062141 -175131523 + L1MEc LINE L1 3164 3214 -3001 582 120 0 0 chr1 107062143 107062218 -175131446 + AluS SINE Alu 3 77 -236 5907 139 30 4 chr1 107062227 107063202 -175130462 - Ricksha DNA DNA -6 3240 2241 7714 52 1 0 chr1 107063202 107064799 -175128865 - L1PA5 LINE L1 -1 6153 4558 1972 117 4 0 chr1 107064799 107065073 -175128591 - AluY SINE Alu -36 275 1 213 312 21 43 chr1 107066371 107066464 -175127200 - L3b LINE CR1 -316 1267 1177 2449 96 0 0 chr1 107067124 107067427 -175126237 + AluSg SINE Alu 1 303 -7 225 365 40 16 chr1 107067477 107067603 -175126061 + L2 LINE L2 3180 3308 -5 773 276 35 31 chr1 107068234 107068488 -175125176 - MIR SINE MIR 0 262 8 2571 59 0 3 chr1 107068797 107069127 -175124537 + AluY SINE Alu 1 329 0 26 0 0 0 chr1 107070332 107070358 -175123306 + AT_rich Low_complexity Low_complexity 1 26 0 1914 144 20 0 chr1 107070773 107071065 -175122599 + AluSx SINE Alu 12 309 -3 1286 241 0 4 chr1 107071204 107071478 -175122186 - MER82 DNA MER2_type -32 621 349 639 220 6 60 chr1 107071482 107071664 -175122000 + L1MA9 LINE L1 5936 6107 -205 31279 62 8 3 chr1 107071670 107076464 -175117200 + L1PA6 LINE L1 1338 6154 0 492 241 114 120 chr1 107076468 107076950 -175116714 + L2 LINE L2 2708 3313 0 463 293 80 0 chr1 107077042 107077192 -175116472 - MLT1L LTR MaLR -2 613 452 1680 257 89 67 chr1 107077243 107077826 -175115838 + MLT1F1 LTR MaLR 1 567 0 253 270 162 48 chr1 107079025 107079176 -175114488 + MIR3 SINE MIR 21 183 -25 22 35 0 0 chr1 107079359 107079388 -175114276 + AT_rich Low_complexity Low_complexity 1 29 0 442 298 94 33 chr1 107079414 107079595 -175114069 - MIR SINE MIR -8 254 63 471 264 334 13 chr1 107080268 107080567 -175113097 + MLT1K LTR MaLR 1 395 -193 419 208 0 50 chr1 107081944 107082045 -175111619 - L2 LINE L2 -1 3312 3217 21 0 0 0 chr1 107083051 107083072 -175110592 + AT_rich Low_complexity Low_complexity 1 21 0 447 294 80 35 chr1 107083768 107083969 -175109695 + MIR SINE MIR 53 262 0 2071 128 20 0 chr1 107084412 107084717 -175108947 + AluSx SINE Alu 1 311 -1 279 368 14 14 chr1 107084759 107084903 -175108761 + MIR3 SINE MIR 24 167 -41 302 183 99 14 chr1 107086691 107086762 -175106902 - L2 LINE L2 -28 3244 3168 888 152 7 13 chr1 107087201 107087352 -175106312 + MER57A LTR ERV1 3 152 -251 304 138 52 0 chr1 107087479 107087537 -175106127 + MER57A LTR ERV1 343 403 0 309 273 66 25 chr1 107087569 107087690 -175105974 - L1MCa LINE L1 -4306 2120 1995 * 317 300 0 0 chr1 107087618 107087708 -175105956 + L1MC4 LINE L1 6614 6703 -1339 366 123 0 0 chr1 107087710 107087767 -175105897 + (CA)n Simple_repeat Simple_repeat 2 58 0 243 289 42 84 chr1 107089031 107089173 -175104491 + L2 LINE L2 3136 3271 -1 1053 105 0 0 chr1 107089177 107089339 -175104325 + (TGGA)n Simple_repeat Simple_repeat 1 162 0 184 348 0 43 chr1 107089375 107089467 -175104197 - L2 LINE L2 0 3272 3185 526 315 30 6 chr1 107090628 107090793 -175102871 - L3 LINE CR1 -5 1572 1404 219 416 0 0 chr1 107090836 107090925 -175102739 + L2 LINE L2 3184 3272 0 482 265 7 29 chr1 107090935 107091071 -175102593 - L2 LINE L2 0 3313 3181 273 258 129 0 chr1 107091427 107091582 -175102082 + L1ME4a LINE L1 5944 6118 -3 300 27 0 0 chr1 107091591 107091628 -175102036 + (CA)n Simple_repeat Simple_repeat 2 38 0 182 299 90 37 chr1 107091646 107091780 -175101884 + L2 LINE L2 2920 3060 -212 278 207 0 49 chr1 107092727 107092809 -175100855 - MER34 LTR ERV1 -30 512 435 1329 150 17 17 chr1 107092827 107093067 -175100597 - LTR32 LTR ERVL 0 471 232 392 192 0 0 chr1 107093083 107093161 -175100503 - LTR32 LTR ERVL -384 87 10 * 503 308 25 74 chr1 107093159 107093591 -175100073 - MER34 LTR ERV1 -131 411 1 270 309 38 79 chr1 107093591 107093783 -175099881 + MIR SINE MIR 30 212 -50 213 239 0 0 chr1 107093803 107093849 -175099815 - L2 LINE L2 -5 3308 3263 569 284 82 22 chr1 107094509 107094741 -175098923 + MIR SINE MIR 16 261 -1 227 329 0 0 chr1 107094759 107094829 -175098835 - L2 LINE L2 -36 3277 3208 233 222 67 33 chr1 107196382 107196472 -174997192 + MER112 DNA MER1_type 1 93 -167 1210 119 6 0 chr1 107197144 107197320 -174996344 - AluSg/x SINE Alu -14 296 120 1641 137 44 26 chr1 107197700 107197999 -174995665 + AluSx SINE Alu 6 309 0 821 131 0 51 chr1 107198585 107198722 -174994942 - FLAM_C SINE Alu -3 130 1 585 93 144 0 chr1 107201124 107201221 -174992443 - HY1 scRNA scRNA -1 111 1 1122 210 114 33 chr1 107201483 107201754 -174991910 + AluJo SINE Alu 3 295 -17 2161 139 0 3 chr1 107201756 107202059 -174991605 + AluSx SINE Alu 1 302 -10 493 272 183 35 chr1 107202105 107202532 -174991132 - MLT1H1 LTR MaLR -16 539 50 388 288 103 22 chr1 107202611 107202795 -174990869 - MIR SINE MIR -31 231 33 294 266 62 9 chr1 107203315 107203428 -174990236 + MER69A DNA AcHobo 31 149 -28 702 175 25 0 chr1 107203584 107203704 -174989960 + AluSg/x SINE Alu 152 274 -38 24 0 0 0 chr1 107204015 107204039 -174989625 + AT_rich Low_complexity Low_complexity 1 24 0 2166 122 0 0 chr1 107205071 107205359 -174988305 + AluSx SINE Alu 1 288 -24 2121 125 3 10 chr1 107205751 107206063 -174987601 - AluSg SINE Alu 0 310 1 421 297 206 42 chr1 107206667 107207394 -174986270 - L2 LINE L2 -5 3267 2422 2142 161 74 37 chr1 107207394 107207788 -174985876 + MSTB2 LTR MaLR 1 414 -43 2247 109 0 7 chr1 107207788 107208090 -174985574 + AluSx SINE Alu 5 304 -8 2142 161 74 37 chr1 107208090 107208130 -174985534 + MSTB2 LTR MaLR 414 451 -6 943 293 202 60 chr1 107208146 107208798 -174984866 - L2 LINE L2 -898 2416 1858 325 87 0 0 chr1 107208798 107208844 -174984820 - L1PA4 LINE L1 -164 5991 5946 1389 24 12 0 chr1 107208844 107209007 -174984657 + L1PA4 LINE L1 5987 6155 0 943 293 202 60 chr1 107209007 107210222 -174983442 - L2 LINE L2 -1455 1859 231 693 328 0 25 chr1 107210449 107210653 -174983011 - MIR SINE MIR -17 245 47 202 315 56 37 chr1 107210944 107210994 -174982670 - L3 LINE CR1 -246 1331 1283 2175 133 0 16 chr1 107210994 107211309 -174982355 - AluSx SINE Alu -2 310 1 202 315 56 37 chr1 107211309 107211350 -174982314 - L3 LINE CR1 -294 1283 1235 1734 145 60 11 chr1 107211350 107211633 -174982031 - AluJb SINE Alu -15 297 1 202 315 56 37 chr1 107211633 107211648 -174982016 - L3 LINE CR1 -342 1235 1222 24 0 0 0 chr1 107211651 107211675 -174981989 + AT_rich Low_complexity Low_complexity 1 24 0 713 329 151 10 chr1 107211885 107212374 -174981290 - L3 LINE CR1 -622 955 398 291 329 0 0 chr1 107213256 107213326 -174980338 + polypyrimidine Low_complexity Low_complexity 1 70 0 1681 180 0 10 chr1 107213326 107213620 -174980044 - AluJo SINE Alu -8 304 14 5942 93 28 147 chr1 107214029 107214501 -174979163 - Tigger3b DNA MER2_type -1797 1232 706 1785 147 63 20 chr1 107214501 107214800 -174978864 + AluJo SINE Alu 1 312 0 5942 93 28 147 chr1 107214800 107215051 -174978613 - Tigger3b DNA MER2_type -2323 706 427 2185 115 7 3 chr1 107215051 107215355 -174978309 - AluSq SINE Alu -8 305 1 5942 93 28 147 chr1 107215355 107216039 -174977625 - Tigger3b DNA MER2_type -2602 427 1 369 0 0 0 chr1 107217388 107217429 -174976235 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr1 107217887 107217908 -174975756 + (T)n Simple_repeat Simple_repeat 1 21 0 3291 125 68 48 chr1 107218005 107218265 -174975399 - MER51A LTR ERV1 0 634 380 2073 106 0 14 chr1 107218265 107218548 -174975116 + AluSg SINE Alu 1 279 -31 3291 125 68 48 chr1 107218548 107218909 -174974755 - MER51A LTR ERV1 -254 380 1 234 271 86 0 chr1 107219071 107219141 -174974523 - MIR3 SINE MIR -38 170 95 21 0 0 0 chr1 107219699 107219720 -174973944 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chr1 107220145 107220206 -174973458 + AT_rich Low_complexity Low_complexity 1 61 0 2288 119 0 0 chr1 107220274 107220586 -174973078 - AluSx SINE Alu 0 312 1 33 0 0 0 chr1 107222232 107222265 -174971399 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr1 107222572 107222603 -174971061 + AT_rich Low_complexity Low_complexity 1 31 0 2306 114 0 0 chr1 107222672 107222969 -174970695 - AluSx SINE Alu -15 297 1 346 235 151 25 chr1 107226156 107226275 -174967389 + MER69 DNA AcHobo 14 147 -1079 24 0 0 0 chr1 107226346 107226370 -174967294 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr1 107226471 107226517 -174967147 + AT_rich Low_complexity Low_complexity 1 46 0 286 318 68 15 chr1 107226536 107226571 -174967093 - L2 LINE L2 0 3272 3240 562 101 0 0 chr1 107226571 107226650 -174967014 - MADE1 DNA Mariner 0 80 2 286 318 68 15 chr1 107226650 107226746 -174966918 - L2 LINE L2 -32 3240 3134 24 0 0 0 chr1 107227928 107227952 -174965712 + AT_rich Low_complexity Low_complexity 1 24 0 454 104 0 0 chr1 107228661 107228728 -174964936 - AluSc SINE Alu -11 298 232 1171 128 10 0 chr1 107228730 107228925 -174964739 + L1MB4 LINE L1 5983 6179 -1 989 304 158 51 chr1 107228929 107229738 -174963926 + L3 LINE CR1 676 1571 -6 463 316 16 49 chr1 107230554 107230798 -174962866 - L3 LINE CR1 -160 1417 1182 321 89 0 0 chr1 107230908 107230953 -174962711 + (TAGTG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr1 107231353 107231374 -174962290 + AT_rich Low_complexity Low_complexity 1 21 0 194 49 0 98 chr1 107231655 107231696 -174961968 + (T)n Simple_repeat Simple_repeat 1 37 0 447 295 0 0 chr1 107233293 107233442 -174960222 + L1MC4 LINE L1 6888 7036 -1006 21 0 0 0 chr1 107233453 107233474 -174960190 + AT_rich Low_complexity Low_complexity 1 21 0 580 266 51 68 chr1 107233535 107233831 -174959833 - MLT1H1 LTR MaLR -234 356 38 1879 143 30 13 chr1 107234086 107234387 -174959277 - AluJb SINE Alu -6 306 1 236 30 30 0 chr1 107234396 107234429 -174959235 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1258 92 25 5 chr1 107234429 107234625 -174959039 - L1PA5 LINE L1 -16 6138 5939 236 30 30 0 chr1 107234741 107234774 -174958890 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 26290 53 3 0 chr1 107234774 107239058 -174954606 - L1PA5 LINE L1 -16 6138 1844 14110 104 12 4 chr1 107239160 107241287 -174952377 - L1P LINE L1 -4002 2144 1 242 291 22 52 chr1 107241303 107241437 -174952227 - HAL1b LINE L1 -473 875 746 483 249 58 12 chr1 107241737 107241910 -174951754 - HAL1 LINE L1 -702 1805 1625 2267 91 3 3 chr1 107242120 107242418 -174951246 - AluSq SINE Alu -15 298 1 246 348 128 23 chr1 107242640 107242945 -174950719 + L3 LINE CR1 1235 1571 -6 1724 162 17 35 chr1 107243392 107243682 -174949982 - AluJo SINE Alu -22 290 6 238 281 215 33 chr1 107243772 107243893 -174949771 - MIR SINE MIR -70 192 50 4636 48 39 3 chr1 107244092 107244676 -174948988 + LTR14B LTR ERVK 4 608 0 299 230 108 38 chr1 107244778 107244911 -174948753 - MIR SINE MIR -72 190 45 514 130 241 9 chr1 107245221 107245329 -174948335 - FLAM_C SINE Alu 0 133 1 245 295 0 26 chr1 107245456 107245534 -174948130 - L2 LINE L2 -37 3276 3201 865 185 34 6 chr1 107245770 107245948 -174947716 - MER5A DNA MER1_type -6 183 1 24 32 0 0 chr1 107246287 107246318 -174947346 + AT_rich Low_complexity Low_complexity 1 31 0 764 217 0 43 chr1 107246338 107246499 -174947165 - AluJo SINE Alu -22 290 137 2477 76 3 0 chr1 107246980 107247281 -174946383 - AluY SINE Alu -9 302 1 759 172 0 15 chr1 107247770 107247904 -174945760 - AluJo SINE Alu -180 132 1 2261 156 83 11 chr1 107248433 107248869 -174944795 + MLT1C LTR MaLR 1 467 0 1298 33 0 0 chr1 107249964 107250116 -174943548 - AluY SINE Alu -14 297 146 432 276 0 9 chr1 107250658 107250763 -174942901 - MIR SINE MIR -109 153 50 22 0 0 0 chr1 107251008 107251030 -174942634 + AT_rich Low_complexity Low_complexity 1 22 0 1299 174 47 77 chr1 107251040 107251338 -174942326 + AluJo SINE Alu 1 289 -23 2153 115 3 0 chr1 107251441 107251728 -174941936 - AluSq SINE Alu -25 288 1 3959 168 41 32 chr1 107251728 107252418 -174941246 - L1MB2 LINE L1 -41 6130 5448 2147 142 0 0 chr1 107252418 107252728 -174940936 - AluJb SINE Alu -2 310 1 3959 168 41 32 chr1 107252728 107252843 -174940821 - L1MB2 LINE L1 -723 5448 5336 2024 150 10 0 chr1 107252843 107253143 -174940521 - AluSx SINE Alu -9 303 1 3959 168 41 32 chr1 107253143 107253619 -174940045 - L1MB2 LINE L1 -835 5336 4824 36 0 0 0 chr1 107254215 107254251 -174939413 + AT_rich Low_complexity Low_complexity 1 36 0 2159 123 13 0 chr1 107254576 107254900 -174938764 - AluSx SINE Alu 0 328 1 2156 121 0 16 chr1 107254902 107255216 -174938448 - AluSx SINE Alu -3 309 1 263 337 0 10 chr1 107255378 107255476 -174938188 + MIR SINE MIR 86 182 -80 592 248 5 60 chr1 107255752 107255970 -174937694 - MER3 DNA MER1_type 0 209 4 754 226 60 46 chr1 107255983 107256200 -174937464 + MER58A DNA MER1_type 5 224 0 194 347 107 33 chr1 107256324 107256474 -174937190 + L2 LINE L2 2719 2879 -435 214 313 50 12 chr1 107256706 107256786 -174936878 + L2 LINE L2 3229 3311 -2 1362 134 0 0 chr1 107257579 107257765 -174935899 + AluSg/x SINE Alu 113 298 -14 4568 197 55 49 chr1 107257765 107258221 -174935443 - Charlie1a DNA MER1_type -1449 1312 860 1897 86 0 79 chr1 107258221 107258568 -174935096 - AluSg SINE Alu 0 324 2 4568 197 55 49 chr1 107258568 107259407 -174934257 - Charlie1a DNA MER1_type -1901 860 8 2215 70 25 41 chr1 107260207 107260521 -174933143 + AluSc SINE Alu 1 309 0 305 20 0 41 chr1 107261681 107261730 -174931934 - L1PA2 LINE L1 0 6155 6109 381 203 0 0 chr1 107262076 107262145 -174931519 + Tigger2 DNA MER2_type 1 69 -2649 * 1742 152 125 32 chr1 107262135 107262543 -174931121 + Tigger2 DNA MER2_type 2273 2718 0 370 206 88 73 chr1 107262820 107262956 -174930708 - MIR SINE MIR -94 168 31 9637 186 50 46 chr1 107263755 107264388 -174929276 - L1MC3 LINE L1 0 7785 7156 1443 186 43 63 chr1 107264388 107264756 -174928908 - MLT1B LTR MaLR 0 390 29 2665 33 0 3 chr1 107264756 107265063 -174928601 + AluY SINE Alu 1 306 -5 1443 186 43 63 chr1 107265063 107265092 -174928572 - MLT1B LTR MaLR -361 29 1 9637 186 50 46 chr1 107265092 107266743 -174926921 - L1MC3 LINE L1 -629 7156 5512 1632 124 4 0 chr1 107266743 107266969 -174926695 - AluSq SINE Alu -2 311 85 252 0 0 0 chr1 107266969 107266997 -174926667 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 2087 107 4 0 chr1 107266997 107267277 -174926387 - AluSg1 SINE Alu -28 281 1 688 81 0 0 chr1 107267277 107267364 -174926300 - AluSq SINE Alu -217 95 9 9637 186 50 46 chr1 107267364 107268125 -174925539 - L1MC3 LINE L1 -2272 5513 4639 2361 85 3 10 chr1 107268665 107268971 -174924693 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr1 107270548 107270572 -174923092 + AT_rich Low_complexity Low_complexity 1 24 0 635 154 9 9 chr1 107275614 107275724 -174917940 + FLAM_A SINE Alu 24 133 -9 242 261 250 0 chr1 107275928 107276016 -174917648 + MIR3 SINE MIR 86 195 -13 2005 141 3 3 chr1 107277017 107277323 -174916341 - AluSx SINE Alu -6 306 1 442 327 42 0 chr1 107278036 107278204 -174915460 + MIR3 SINE MIR 33 207 -1 2079 127 3 7 chr1 107278207 107278514 -174915150 + AluSx SINE Alu 1 306 -6 2061 115 39 21 chr1 107279360 107279691 -174913973 - MER1B DNA MER1_type -2 337 1 2304 117 0 0 chr1 107279902 107280211 -174913453 - AluSx SINE Alu -3 309 1 262 279 47 0 chr1 107280473 107280559 -174913105 - L2 LINE L2 -42 3271 3182 1634 182 28 31 chr1 107280576 107280933 -174912731 + MLT1A1 LTR MaLR 10 365 0 876 250 113 34 chr1 107281087 107281632 -174912032 - L2 LINE L2 -15 3298 2708 655 247 72 8 chr1 107281638 107281873 -174911791 + MER112 DNA MER1_type 5 254 -6 642 293 49 13 chr1 107281873 107282098 -174911566 - L2 LINE L2 -724 2590 2358 1631 176 26 68 chr1 107282441 107282822 -174910842 - MLT1A1 LTR MaLR 0 365 1 222 350 70 0 chr1 107283354 107283454 -174910210 - L2 LINE L2 -16 3297 3191 526 186 16 31 chr1 107283477 107283606 -174910058 - L1MC3 LINE L1 -6 7779 7653 398 266 0 28 chr1 107283702 107283811 -174909853 - MIR3 SINE MIR -16 192 87 300 297 42 17 chr1 107283924 107284042 -174909622 - L2 LINE L2 -1 3312 3192 2083 180 83 15 chr1 107284160 107284627 -174909037 + MLT1D LTR MaLR 2 500 -5 1414 214 38 55 chr1 107284834 107285254 -174908410 + L1ME3A LINE L1 5702 6114 -56 25 31 0 0 chr1 107285868 107285900 -174907764 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr1 107286749 107286783 -174906881 + AT_rich Low_complexity Low_complexity 1 34 0 416 270 0 0 chr1 107286996 107287096 -174906568 - MER5A DNA MER1_type -80 109 10 1166 138 98 13 chr1 107287118 107287343 -174906321 - MSTA LTR MaLR 0 428 185 34967 84 4 28 chr1 107287343 107293639 -174900025 - L1PA6 LINE L1 -3 6151 11 841 121 83 19 chr1 107293664 107293821 -174899843 - MSTA LTR MaLR -208 167 1 582 168 10 0 chr1 107294665 107294766 -174898898 - MER90 LTR ERV1 0 614 513 307 219 156 44 chr1 107294912 107295117 -174898547 - L2 LINE L2 -1232 2082 1855 1849 166 39 0 chr1 107295127 107295458 -174898206 - MER2 DNA MER2_type 0 344 1 225 0 0 0 chr1 107295508 107295533 -174898131 + (TG)n Simple_repeat Simple_repeat 2 26 0 1127 166 63 8 chr1 107295721 107295974 -174897690 - L1MC3 LINE L1 -1 7784 7518 1226 177 183 7 chr1 107296024 107296324 -174897340 + MER93b LTR ERV1 17 369 -4 2368 173 11 9 chr1 107296330 107296782 -174896882 - L1MC3 LINE L1 -285 7500 7048 2242 107 0 7 chr1 107296822 107297120 -174896544 + AluSc SINE Alu 1 296 -13 1662 188 19 23 chr1 107297409 107297718 -174895946 - AluJo SINE Alu -4 308 1 610 282 28 4 chr1 107297805 107298000 -174895664 + MIR SINE MIR 2 200 -62 2068 147 0 0 chr1 107299053 107299359 -174894305 + AluSx SINE Alu 1 306 -6 329 309 168 13 chr1 107299812 107299961 -174893703 - MIR3 SINE MIR -23 185 14 366 283 201 33 chr1 107300510 107300694 -174892970 + MIR SINE MIR 48 262 0 1256 204 59 59 chr1 107300798 107301224 -174892440 - HsTC2 DNA Tc2 -3 1895 1294 301 245 20 20 chr1 107301302 107301404 -174892260 - HsTC2 DNA Tc2 -1787 111 10 864 160 0 0 chr1 107301411 107301536 -174892128 + FLAM_C SINE Alu 3 127 -16 25 0 0 28 chr1 107301606 107301622 -174892042 + AT_rich Low_complexity Low_complexity 1 16 -19 2756 13 0 6 chr1 107301622 107301934 -174891730 + AluYa5 SINE Alu 1 310 -1 25 0 0 28 chr1 107301934 107301953 -174891711 + AT_rich Low_complexity Low_complexity 16 35 0 2106 133 7 7 chr1 107301998 107302298 -174891366 + AluSx SINE Alu 2 301 -11 499 234 117 7 chr1 107302695 107302849 -174890815 - L1ME2 LINE L1 -6 6158 5988 424 299 62 7 chr1 107303646 107303790 -174889874 - L2 LINE L2 -1 3312 3161 183 327 19 0 chr1 107303831 107303883 -174889781 - L2 LINE L2 -251 3021 2969 183 100 0 0 chr1 107304168 107304198 -174889466 + (GA)n Simple_repeat Simple_repeat 2 31 0 2491 28 0 47 chr1 107304526 107304844 -174888820 - AluY SINE Alu -8 303 1 384 277 134 8 chr1 107304863 107304982 -174888682 + L2 LINE L2 3138 3271 -1 230 369 39 19 chr1 107305163 107305266 -174888398 + L2 LINE L2 3149 3253 -19 429 239 23 46 chr1 107305306 107305436 -174888228 - L2 LINE L2 -1 3312 3186 1648 125 14 10 chr1 107305438 107305733 -174887931 + L1 LINE L1 4951 5246 -900 380 254 86 39 chr1 107305865 107306097 -174887567 + MLT1J LTR MaLR 269 511 0 469 235 35 41 chr1 107306303 107306473 -174887191 - L1MC5 LINE L1 -44 7917 7749 347 260 20 20 chr1 107306595 107306695 -174886969 + CT-rich Low_complexity Low_complexity 4 103 0 2240 93 0 10 chr1 107308766 107309066 -174884598 - AluSx SINE Alu -15 297 1 21 57 0 0 chr1 107309140 107309175 -174884489 + AT_rich Low_complexity Low_complexity 1 35 0 261 268 14 28 chr1 107310263 107310334 -174883330 + L2 LINE L2 3201 3270 -43 216 176 20 49 chr1 107310664 107310766 -174882898 + (CCCCG)n Simple_repeat Simple_repeat 5 103 0 23 33 0 0 chr1 107310775 107310805 -174882859 + GC_rich Low_complexity Low_complexity 1 30 0 499 135 22 0 chr1 107311552 107311641 -174882023 - AluSp/q SINE Alu -19 294 204 250 182 0 55 chr1 107311641 107311679 -174881985 - AluJb SINE Alu -131 171 132 2338 42 0 21 chr1 107311679 107312003 -174881661 - AluY SINE Alu 0 318 1 2445 72 0 3 chr1 107312003 107312310 -174881354 - AluY SINE Alu -5 306 1 250 182 0 55 chr1 107312310 107312324 -174881340 - AluJb SINE Alu -168 134 120 2343 79 3 13 chr1 107312696 107312999 -174880665 + AluSq SINE Alu 1 300 -13 213 226 38 0 chr1 107313121 107313174 -174880490 - L2 LINE L2 0 3272 3218 224 275 72 0 chr1 107314413 107314482 -174879182 - MIR SINE MIR -90 172 99 221 170 75 38 chr1 107314704 107314757 -174878907 - MIR SINE MIR -96 166 112 942 155 43 16 chr1 107316694 107316881 -174876783 - MLT1D LTR MaLR -313 192 1 797 194 0 78 chr1 107317541 107317721 -174875943 + FRAM SINE Alu 1 166 0 1011 264 69 35 chr1 107317952 107318297 -174875367 - LTR40a LTR ERVL -131 388 28 1712 189 43 73 chr1 107318297 107318804 -174874860 - LTR22B LTR ERVK 0 492 1 1011 264 69 35 chr1 107318804 107318833 -174874831 - LTR40a LTR ERVL -491 28 1 208 217 14 29 chr1 107318841 107318910 -174874754 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 352 270 87 0 chr1 107318965 107319080 -174874584 + L2 LINE L2 3148 3272 0 2363 91 0 0 chr1 107319288 107319584 -174874080 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 107322022 107322043 -174871621 + AT_rich Low_complexity Low_complexity 1 21 0 707 312 17 26 chr1 107322800 107323034 -174870630 - MIR SINE MIR -29 233 2 22 35 0 0 chr1 107324208 107324237 -174869427 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr1 107324681 107324704 -174868960 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 107325105 107325127 -174868537 + AT_rich Low_complexity Low_complexity 1 22 0 1729 155 3 27 chr1 107325987 107326283 -174867381 + AluJb SINE Alu 1 289 -23 292 153 139 0 chr1 107326322 107326394 -174867270 - LTR33A LTR ERVL -3 520 439 328 222 71 56 chr1 107326773 107326899 -174866765 - LTR50 LTR ERVL -628 167 40 553 271 65 9 chr1 107327274 107327488 -174866176 - ERVL LTR ERVL -334 5430 5205 181 211 0 26 chr1 107327598 107327636 -174866028 - L3 LINE CR1 -44 1533 1497 1356 310 29 17 chr1 107327636 107327999 -174865665 - ERVL LTR ERVL -745 5019 4647 2156 115 10 3 chr1 107327999 107328294 -174865370 - AluSx SINE Alu -14 298 2 1356 310 29 17 chr1 107328294 107328450 -174865214 - ERVL LTR ERVL -1117 4647 4494 2343 306 85 15 chr1 107328490 107329536 -174864128 - ERVL LTR ERVL -1268 4386 3415 2511 63 7 0 chr1 107329536 107329838 -174863826 + AluY SINE Alu 1 304 -7 2343 306 85 15 chr1 107329838 107330705 -174862959 - ERVL LTR ERVL -2239 3415 2340 242 178 0 0 chr1 107330708 107330753 -174862911 + L1ME3A LINE L1 4887 4931 -1215 1372 243 62 74 chr1 107330809 107330957 -174862707 + L1ME3A LINE L1 5047 5195 -967 2367 91 7 0 chr1 107330957 107331266 -174862398 + AluY SINE Alu 1 311 0 1372 243 62 74 chr1 107331266 107332036 -174861628 + L1ME3A LINE L1 5195 5948 -214 331 304 13 44 chr1 107332107 107332265 -174861399 + L1ME3A LINE L1 5962 6114 -56 25 90 0 0 chr1 107332328 107332395 -174861269 + AT_rich Low_complexity Low_complexity 1 67 0 349 292 62 0 chr1 107332453 107332549 -174861115 - L2 LINE L2 -233 3080 2979 422 244 215 0 chr1 107332688 107332836 -174860828 + MER5A DNA MER1_type 4 188 -1 840 288 71 9 chr1 107332869 107333289 -174860375 - Tigger8 DNA MER2_type -46 620 175 1457 192 49 68 chr1 107333707 107333742 -174859922 - MLT2C2 LTR ERVL 0 464 430 423 0 0 0 chr1 107333742 107333789 -174859875 + (TG)n Simple_repeat Simple_repeat 1 47 0 1457 192 49 68 chr1 107333789 107334226 -174859438 - MLT2C2 LTR ERVL -34 430 1 380 350 16 16 chr1 107334852 107335038 -174858626 + L2 LINE L2 2175 2360 -954 948 212 28 103 chr1 107335305 107335663 -174858001 - MER46C DNA MER2_type -7 331 1 315 277 64 50 chr1 107336035 107336176 -174857488 + MIR SINE MIR 117 259 -3 261 299 51 0 chr1 107336839 107336956 -174856708 - L1ME3A LINE L1 -15 6155 6033 1127 270 114 5 chr1 107337106 107337753 -174855911 - L1ME3A LINE L1 -279 5891 5158 2032 193 10 58 chr1 107337856 107338369 -174855295 + LTR42 LTR ERVL 1 488 -7 1697 211 138 19 chr1 107338416 107338869 -174854795 - L1ME2 LINE L1 -116 6048 5520 441 75 0 161 chr1 107338869 107338931 -174854733 + MADE1 DNA Mariner 2 46 -34 2285 111 0 0 chr1 107338931 107339229 -174854435 - AluSq SINE Alu -15 298 1 441 75 0 161 chr1 107339229 107339259 -174854405 + MADE1 DNA Mariner 46 79 -1 1697 211 138 19 chr1 107339259 107339340 -174854324 - L1ME2 LINE L1 -644 5520 5450 192 40 0 0 chr1 107340702 107340727 -174852937 + (A)n Simple_repeat Simple_repeat 1 25 0 1808 143 184 8 chr1 107341422 107341608 -174852056 - MSTA LTR MaLR 0 428 276 468 48 0 0 chr1 107341608 107341671 -174851993 + (GA)n Simple_repeat Simple_repeat 1 63 0 1808 143 184 8 chr1 107341671 107341848 -174851816 - MSTA LTR MaLR -152 276 1 255 219 41 0 chr1 107342292 107342365 -174851299 + T-rich Low_complexity Low_complexity 4 79 0 236 287 124 16 chr1 107342574 107342703 -174850961 - MIR3 SINE MIR -6 202 60 2197 130 3 0 chr1 107342845 107343152 -174850512 - AluSx SINE Alu -4 308 1 1351 316 80 10 chr1 107343486 107344001 -174849663 - L3 LINE CR1 -1 1576 1026 209 188 0 145 chr1 107344898 107344967 -174848697 + L2 LINE L2 3251 3309 -4 207 271 34 0 chr1 107347201 107347260 -174846404 - MIR SINE MIR -132 130 70 1363 199 31 93 chr1 107347383 107347770 -174845894 - MLT1A1 LTR MaLR -2 363 1 14746 166 22 22 chr1 107347916 107349491 -174844173 + L1MA5A LINE L1 2128 3702 -2595 459 35 0 0 chr1 107349491 107349548 -174844116 + (GA)n Simple_repeat Simple_repeat 2 58 0 14746 166 22 22 chr1 107349548 107352136 -174841528 + L1MA5A LINE L1 3702 6291 -6 1411 209 38 35 chr1 107352956 107353213 -174840451 - MER58B DNA MER1_type -2079 341 81 2178 112 3 7 chr1 107353213 107353518 -174840146 + AluSx SINE Alu 1 304 -8 1411 209 38 35 chr1 107353518 107353599 -174840065 - MER58B DNA MER1_type -2339 81 2 432 332 89 5 chr1 107353604 107353806 -174839858 + MIR SINE MIR 31 249 -13 1804 73 5 0 chr1 107353985 107354205 -174839459 + AluSp SINE Alu 1 221 -92 388 254 26 35 chr1 107354238 107354352 -174839312 - MIR SINE MIR -65 197 85 359 297 59 89 chr1 107354399 107354837 -174838827 + MLT1K LTR MaLR 69 493 -95 707 248 43 47 chr1 107355156 107355598 -174838066 + LTR33 LTR ERVL 5 520 -1 441 301 46 13 chr1 107355607 107355839 -174837825 - L1MC/D LINE L1 -836 5464 5285 410 279 134 11 chr1 107355840 107356102 -174837562 - L1MC/D LINE L1 -1753 4393 4100 287 152 0 0 chr1 107356343 107356389 -174837275 - MER103 DNA DNA -48 118 73 360 0 0 0 chr1 107356786 107356826 -174836838 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 271 43 0 chr1 107356907 107356977 -174836687 + CT-rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr1 107358805 107358827 -174834837 + AT_rich Low_complexity Low_complexity 1 22 0 191 263 123 0 chr1 107360420 107360477 -174833187 + MIR SINE MIR 49 112 -150 188 164 18 109 chr1 107360641 107360696 -174832968 - MIR SINE MIR -60 148 99 22 0 0 0 chr1 107360713 107360735 -174832929 + AT_rich Low_complexity Low_complexity 1 22 0 190 338 52 32 chr1 107360892 107361046 -174832618 + L2 LINE L2 1751 1907 -1407 698 300 63 4 chr1 107361278 107361515 -174832149 - MIR SINE MIR -10 252 2 214 264 154 0 chr1 107361688 107361779 -174831885 + MIR SINE MIR 63 167 -95 235 184 0 20 chr1 107362262 107362311 -174831353 - L2 LINE L2 -5 3308 3261 268 232 111 20 chr1 107362325 107362424 -174831240 + MER117 DNA MER1_type 12 119 -78 1517 201 99 2 chr1 107364070 107364472 -174829192 + Charlie4a DNA MER1_type 20 460 -48 337 308 56 0 chr1 107364668 107364775 -174828889 + L2 LINE L2 3199 3311 -2 218 204 19 0 chr1 107365099 107365153 -174828511 + (TG)n Simple_repeat Simple_repeat 2 56 0 272 289 60 0 chr1 107365181 107365264 -174828400 - MIR3 SINE MIR -21 187 100 * 281 250 43 11 chr1 107365263 107365355 -174828309 + L2 LINE L2 1897 1991 -1323 214 304 29 39 chr1 107365340 107365442 -174828222 + L2 LINE L2 2914 3014 -258 * 947 157 32 85 chr1 107365500 107365748 -174827916 - MER106A DNA MER1_type -1 235 1 471 347 58 58 chr1 107366307 107366575 -174827089 + L2 LINE L2 2910 3180 -92 594 112 61 178 chr1 107366575 107366789 -174826875 + MER53 DNA DNA 1 189 0 471 347 58 58 chr1 107366789 107366883 -174826781 + L2 LINE L2 3179 3272 0 600 241 58 11 chr1 107366884 107367058 -174826606 - L2 LINE L2 -50 3263 3082 * 1892 286 30 56 chr1 107367055 107367579 -174826085 + L2 LINE L2 2355 2836 -477 435 241 9 26 chr1 107367579 107367695 -174825969 - MER81 DNA DNA 0 114 1 1892 286 30 56 chr1 107367695 107368161 -174825503 + L2 LINE L2 2836 3312 -1 1363 281 51 24 chr1 107368233 107368765 -174824899 - L2 LINE L2 -312 3001 2456 289 268 0 0 chr1 107368784 107368855 -174824809 - L1ME3A LINE L1 -5 6165 6095 42835 31 22 1 chr1 107368867 107374888 -174818776 - L1PA3 LINE L1 0 6155 5 365 270 20 40 chr1 107374885 107375033 -174818631 - L1ME3A LINE L1 -63 6107 5963 * 1392 218 247 29 chr1 107375030 107375760 -174817904 - L1MCc LINE L1 -3143 3798 2910 979 274 149 27 chr1 107375770 107376878 -174816786 - L1MCc LINE L1 -4343 2779 1278 697 270 56 34 chr1 107376974 107377207 -174816457 + MIR SINE MIR 20 257 -5 1836 131 11 21 chr1 107377213 107377495 -174816169 - AluJo SINE Alu -13 299 21 38 22 0 0 chr1 107378795 107378840 -174814824 + AT_rich Low_complexity Low_complexity 1 45 0 240 365 19 10 chr1 107379545 107379649 -174814015 + L2 LINE L2 3160 3264 -8 1386 125 4 8 chr1 107380300 107380540 -174813124 - L1MB3 LINE L1 -1 6182 5944 1811 163 26 16 chr1 107381661 107381968 -174811696 + AluJb SINE Alu 1 310 -2 212 273 0 0 chr1 107383081 107383125 -174810539 + L2 LINE L2 3266 3309 -4 405 214 57 79 chr1 107383225 107383365 -174810299 + MIR SINE MIR 16 152 -56 213 190 86 17 chr1 107383519 107383577 -174810087 + MIR3 SINE MIR 131 192 -16 236 355 40 61 chr1 107383673 107384050 -174809614 + L2 LINE L2 2364 2732 -582 418 353 65 70 chr1 107384076 107384492 -174809172 + L2 LINE L2 2841 3254 -18 233 222 37 19 chr1 107384959 107385013 -174808651 - MER91A DNA MER1_type -2 188 134 227 248 354 0 chr1 107385054 107385167 -174808497 - MER91A DNA MER1_type -20 176 24 540 149 9 19 chr1 107386807 107386914 -174806750 + L1MA8 LINE L1 6183 6288 -3 198 71 0 0 chr1 107388950 107388978 -174804686 + (TC)n Simple_repeat Simple_repeat 2 29 0 325 325 94 8 chr1 107391501 107391618 -174802046 - L2 LINE L2 -5 3267 3141 216 0 0 0 chr1 107391686 107391710 -174801954 + (CAA)n Simple_repeat Simple_repeat 1 24 0 361 241 215 13 chr1 107391715 107391873 -174801791 - MIR SINE MIR 0 262 73 587 265 41 110 chr1 107391883 107392275 -174801389 + L2 LINE L2 2512 2866 -448 1141 216 18 0 chr1 107392275 107392493 -174801171 - MER58A DNA MER1_type -2 222 1 587 265 41 110 chr1 107392493 107392583 -174801081 + L2 LINE L2 2866 2961 -353 387 316 55 43 chr1 107392622 107392878 -174800786 + L2 LINE L2 3050 3308 -5 604 251 185 5 chr1 107393550 107393745 -174799919 - MIR SINE MIR -19 243 14 232 135 39 19 chr1 107396183 107396235 -174797429 + GA-rich Low_complexity Low_complexity 3 55 0 204 125 0 0 chr1 107396650 107396682 -174796982 + (T)n Simple_repeat Simple_repeat 1 32 0 332 200 50 10 chr1 107396728 107396828 -174796836 + MER113 DNA MER1_type? 5 108 -413 23 0 0 0 chr1 107397551 107397574 -174796090 + AT_rich Low_complexity Low_complexity 1 23 0 298 311 37 25 chr1 107399436 107399555 -174794109 - MIR SINE MIR -52 156 35 225 264 35 58 chr1 107400200 107400287 -174793377 - L2 LINE L2 0 3313 3229 385 249 249 5 chr1 107400547 107400756 -174792908 + MIR SINE MIR 1 260 -2 365 308 25 8 chr1 107401767 107401887 -174791777 - MER5A DNA MER1_type -6 183 62 23 0 0 0 chr1 107403465 107403488 -174790176 + AT_rich Low_complexity Low_complexity 1 23 0 4292 87 68 2 chr1 107403488 107403846 -174789818 - L1PB1 LINE L1 -1 6150 5732 234 0 0 0 chr1 107403846 107403872 -174789792 + (TA)n Simple_repeat Simple_repeat 2 27 0 4292 87 68 2 chr1 107403872 107404134 -174789530 - L1PB1 LINE L1 -419 5732 5489 624 141 0 0 chr1 107404134 107404233 -174789431 + L1PB1 LINE L1 5386 5484 -667 615 314 50 36 chr1 107404366 107404809 -174788855 + HAL1b LINE L1 69 517 -831 1018 165 71 107 chr1 107404948 107405415 -174788249 - L1MC5 LINE L1 -35 7926 7477 4731 166 34 35 chr1 107405423 107405447 -174788217 - L1MB2 LINE L1 -2 6169 6146 1852 201 23 25 chr1 107405447 107405844 -174787820 - MSTD LTR MaLR 0 396 1 4731 166 34 35 chr1 107405844 107407049 -174786615 - L1MB2 LINE L1 -25 6146 4942 272 200 0 14 chr1 107407069 107407139 -174786525 + HAL1b LINE L1 711 779 -569 304 285 119 7 chr1 107407714 107407865 -174785799 + L1MC4a LINE L1 2235 2402 -3744 1612 233 65 26 chr1 107407872 107408215 -174785449 - MLT1G LTR MaLR -1 589 226 2018 132 16 13 chr1 107408215 107408526 -174785138 - AluSx SINE Alu 0 312 1 1612 233 65 26 chr1 107408526 107408599 -174785065 - MLT1G LTR MaLR -364 226 157 1846 121 57 51 chr1 107408605 107408764 -174784900 + THE1C LTR MaLR 2 159 -216 2045 123 31 0 chr1 107408764 107409057 -174784607 - AluSg SINE Alu -8 302 1 1846 121 57 51 chr1 107409057 107409269 -174784395 + THE1C LTR MaLR 159 375 0 663 221 0 7 chr1 107409271 107409407 -174784257 - MLT1A1 LTR MaLR -1 364 230 511 235 0 0 chr1 107409408 107409510 -174784154 + MLT-int LTR MaLR 430 531 -1204 676 161 15 8 chr1 107410085 107410215 -174783449 + MLT-int LTR MaLR 526 656 -1079 2183 145 14 43 chr1 107410215 107410562 -174783102 - MLT1A1-int LTR MaLR -1332 403 68 1954 91 8 4 chr1 107410562 107410827 -174782837 - AluSc SINE Alu -2 307 42 2183 145 14 43 chr1 107410827 107410894 -174782770 - MLT1A1-int LTR MaLR -1667 68 1 2133 179 6 3 chr1 107410895 107411253 -174782411 - MLT1A1 LTR MaLR -1 364 6 634 195 38 44 chr1 107411253 107411412 -174782252 - MLT1A1 LTR MaLR -432 158 1 784 316 143 47 chr1 107411466 107412057 -174781607 + L1MC4a LINE L1 3959 4492 -1654 1962 150 0 7 chr1 107412057 107412357 -174781307 + AluJb SINE Alu 1 298 -14 784 316 143 47 chr1 107412357 107412765 -174780899 + L1MC4a LINE L1 4492 5054 -1092 447 315 64 34 chr1 107414160 107414458 -174779206 - L2 LINE L2 -712 2602 2296 182 333 0 0 chr1 107414514 107414565 -174779099 + L2 LINE L2 2184 2234 -1080 665 310 39 39 chr1 107414565 107414584 -174779080 + MLT1I LTR MaLR 1 19 -390 2087 143 33 33 chr1 107414584 107414948 -174778716 + THE1B LTR MaLR 1 364 0 665 310 39 39 chr1 107414948 107415212 -174778452 + MLT1I LTR MaLR 18 284 -125 395 240 0 0 chr1 107415268 107415368 -174778296 - L1P LINE L1 -963 5183 5084 1457 167 4 4 chr1 107415368 107415643 -174778021 - Tigger2 DNA MER2_type -2443 275 1 520 317 43 22 chr1 107415783 107416013 -174777651 + MIR SINE MIR 15 249 -13 202 216 0 0 chr1 107516115 107516166 -174677498 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 580 309 126 16 chr1 107516490 107516982 -174676682 + L1MC4a LINE L1 5296 5841 -1967 1336 48 6 0 chr1 107516992 107517157 -174676507 - L1PA7 LINE L1 -8 6146 5981 334 74 0 6 chr1 107517157 107517210 -174676454 + L1PA7 LINE L1 5911 5955 -199 746 272 40 35 chr1 107517247 107517475 -174676189 + MIR SINE MIR 13 241 -21 22 0 0 0 chr1 107518360 107518382 -174675282 + AT_rich Low_complexity Low_complexity 1 22 0 2460 300 114 27 chr1 107518996 107519291 -174674373 + L2 LINE L2 1701 1969 -1344 2088 151 53 6 chr1 107519291 107519649 -174674015 + THE1C LTR MaLR 1 375 0 2460 300 114 27 chr1 107519649 107520838 -174672826 + L2 LINE L2 1969 3313 0 295 333 16 0 chr1 107521426 107521549 -174672115 + GA-rich Low_complexity Low_complexity 2 126 0 24144 143 23 10 chr1 107521763 107526874 -174666790 - L1PA8 LINE L1 -2 6485 1214 210 91 0 0 chr1 107526874 107526907 -174666757 + (TTG)n Simple_repeat Simple_repeat 1 33 0 24144 143 23 10 chr1 107526907 107528130 -174665534 - L1PA8 LINE L1 -5273 1214 8 443 209 12 193 chr1 107529434 107529688 -174663976 - MIR SINE MIR -53 209 2 293 250 95 108 chr1 107529698 107529930 -174663734 - L2 LINE L2 -10 3303 3075 372 43 0 0 chr1 107530491 107530537 -174663127 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chr1 107530539 107530567 -174663097 + AT_rich Low_complexity Low_complexity 1 28 0 2294 104 0 3 chr1 107530858 107531156 -174662508 + AluY SINE Alu 1 297 -14 2109 133 13 45 chr1 107531600 107531976 -174661688 - THE1B LTR MaLR 0 364 1 11071 95 31 15 chr1 107531976 107533531 -174660133 - THE1B-int LTR MaLR 0 1580 1 1990 126 30 54 chr1 107533531 107533904 -174659760 - THE1B LTR MaLR 0 364 1 317 313 30 0 chr1 107536668 107536767 -174656897 + MIR SINE MIR 50 151 -111 439 324 45 34 chr1 107536943 107537122 -174656542 + MIR3 SINE MIR 19 199 -9 784 265 91 9 chr1 107537206 107537436 -174656228 + MIR SINE MIR 2 250 -12 219 114 0 0 chr1 107537447 107537482 -174656182 + (TTG)n Simple_repeat Simple_repeat 2 36 0 202 154 103 0 chr1 107538156 107538195 -174655469 - L2 LINE L2 -81 3232 3190 472 317 96 34 chr1 107538596 107538981 -174654683 + L1M4 LINE L1 2892 3300 -2846 19046 151 31 39 chr1 107539000 107543205 -174650459 + L1MA2 LINE L1 19 4263 -3460 751 194 0 0 chr1 107543205 107543329 -174650335 + FLAM_C SINE Alu 3 126 -17 19046 151 31 39 chr1 107543329 107546766 -174646898 + L1MA2 LINE L1 4263 7723 0 21 0 0 0 chr1 107546766 107546787 -174646877 + AT_rich Low_complexity Low_complexity 1 21 0 1708 219 19 22 chr1 107547864 107548230 -174645434 + MLT1A1 LTR MaLR 1 365 0 545 306 90 35 chr1 107548354 107548664 -174645000 + LTR33 LTR ERVL 3 329 -192 1047 255 132 45 chr1 107549192 107549973 -174643691 + HAL1 LINE L1 812 1660 -847 276 330 33 0 chr1 107550544 107550756 -174642908 + L1ME LINE L1 5263 5481 -689 281 234 37 19 chr1 107550894 107551001 -174642663 + L1M1 LINE L1 5695 5803 -499 1839 167 36 9 chr1 107551003 107551339 -174642325 + LTR48 LTR ERV1 1 345 -442 18741 80 11 0 chr1 107551723 107555103 -174638561 - L1PA7 LINE L1 -4 6150 2741 1095 195 162 25 chr1 107555104 107555468 -174638196 + LTR48 LTR ERV1 374 787 0 351 227 174 8 chr1 107555819 107555951 -174637713 - MER106B DNA MER1_type -4 1055 902 464 224 106 102 chr1 107556073 107556319 -174637345 - LTR33A LTR ERVL -265 258 12 395 264 149 0 chr1 107556552 107556726 -174636938 + HAL1 LINE L1 1701 1900 -607 266 348 187 23 chr1 107557297 107557645 -174636019 + L2 LINE L2 2863 3267 -5 537 77 13 0 chr1 107557748 107557826 -174635838 - MADE1 DNA Mariner 0 80 2 896 125 31 0 chr1 107559333 107559461 -174634203 + AluSp/q SINE Alu 163 294 -19 25 0 0 0 chr1 107559474 107559499 -174634165 + AT_rich Low_complexity Low_complexity 1 25 0 259 167 46 37 chr1 107560388 107560401 -174633263 + (TA)n Simple_repeat Simple_repeat 1 12 -97 748 168 28 0 chr1 107560401 107560544 -174633120 + L1MC1 LINE L1 6181 6327 -6 259 167 46 37 chr1 107560544 107560638 -174633026 + (TA)n Simple_repeat Simple_repeat 12 109 0 228 135 0 0 chr1 107560641 107560678 -174632986 + (TG)n Simple_repeat Simple_repeat 2 38 0 19900 148 28 3 chr1 107561024 107564395 -174629269 + L1MA4 LINE L1 12 3465 -4100 2017 111 10 0 chr1 107564401 107564707 -174628957 + L1MA3 LINE L1 5997 6305 0 606 277 132 0 chr1 107565018 107565231 -174628433 + MIR SINE MIR 20 260 -2 4728 147 68 8 chr1 107565676 107567284 -174626380 + L1MA4 LINE L1 5985 7696 -23 27 29 0 0 chr1 107567480 107567514 -174626150 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr1 107568571 107568607 -174625057 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 107570579 107570601 -174623063 + AT_rich Low_complexity Low_complexity 1 22 0 287 160 0 0 chr1 107570817 107570867 -174622797 + MLT1L LTR MaLR 151 200 -415 2022 180 9 28 chr1 107570876 107571310 -174622354 + L1MB8 LINE L1 5747 6172 -6 22 0 0 0 chr1 107571424 107571446 -174622218 + AT_rich Low_complexity Low_complexity 1 22 0 555 263 90 83 chr1 107571471 107571593 -174622071 - L2 LINE L2 0 3313 3193 1729 115 7 7 chr1 107571593 107571888 -174621776 + L1MA4A LINE L1 6002 6296 -7 555 263 90 83 chr1 107571888 107572065 -174621599 - L2 LINE L2 -120 3193 3012 298 233 0 0 chr1 107572184 107572257 -174621407 + CT-rich Low_complexity Low_complexity 1 73 0 257 321 101 43 chr1 107572734 107573011 -174620653 - L2 LINE L2 -4 3309 3017 1262 229 25 17 chr1 107574418 107574584 -174619080 - MLT1A1 LTR MaLR -8 357 194 2666 205 92 19 chr1 107574584 107575267 -174618397 - MER44D DNA MER2_type 0 605 1 1262 229 25 17 chr1 107575267 107575454 -174618210 - MLT1A1 LTR MaLR -171 194 1 1221 239 68 26 chr1 107575991 107576565 -174617099 + L1ME3A LINE L1 4124 4721 -1425 1375 158 17 30 chr1 107576583 107576771 -174616893 - AluJo SINE Alu 0 315 129 180 0 0 0 chr1 107576771 107576791 -174616873 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1375 158 17 30 chr1 107576791 107576869 -174616795 - AluJo SINE Alu -186 129 52 1405 240 130 30 chr1 107576869 107577189 -174616475 + L1ME3A LINE L1 5423 5710 -460 1525 154 29 6 chr1 107577189 107577501 -174616163 - MER33 DNA MER1_type -1 323 5 1405 240 130 30 chr1 107577501 107577804 -174615860 + L1ME3A LINE L1 5710 6108 -62 1785 99 25 4 chr1 107578547 107578790 -174614874 - AluSc SINE Alu -13 296 49 1808 111 12 8 chr1 107578793 107579045 -174614619 - AluSg SINE Alu -20 290 38 1441 209 79 6 chr1 107581130 107581470 -174612194 - MLT1A1 LTR MaLR 0 365 1 258 276 64 90 chr1 107581480 107581516 -174612148 - MIR SINE MIR -105 157 122 1870 234 91 20 chr1 107581516 107582020 -174611644 - MLT1F LTR MaLR -2 540 1 258 276 64 90 chr1 107582020 107582139 -174611525 - MIR SINE MIR -140 122 6 413 265 130 48 chr1 107583468 107583698 -174609966 - MIR SINE MIR 0 262 14 182 331 105 38 chr1 107584198 107584331 -174609333 - L2 LINE L2 -10 3262 3121 772 257 171 18 chr1 107584524 107584959 -174608705 + LTR33A LTR ERVL 11 512 -11 320 153 47 71 chr1 107584959 107585044 -174608620 - LTR16A1 LTR ERVL 0 457 375 319 248 119 0 chr1 107585155 107585256 -174608408 + MER81 DNA DNA 2 114 0 2249 151 42 53 chr1 107585607 107585646 -174608018 + MSTB LTR MaLR 1 39 -387 2105 123 17 0 chr1 107585646 107585946 -174607718 - AluSx SINE Alu -7 305 1 2249 151 42 53 chr1 107585946 107586337 -174607327 + MSTB LTR MaLR 39 426 0 242 281 182 8 chr1 107586473 107586594 -174607070 + MIR SINE MIR 109 250 -12 216 0 0 0 chr1 107586904 107586928 -174606736 + (TG)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr1 107587332 107587369 -174606295 + (CA)n Simple_repeat Simple_repeat 1 37 0 547 232 42 7 chr1 107588212 107588354 -174605310 - MIR SINE MIR -85 177 31 323 284 20 0 chr1 107588505 107588607 -174605057 + MER5A DNA MER1_type 9 112 -77 22 35 0 0 chr1 107589242 107589271 -174604393 + AT_rich Low_complexity Low_complexity 1 29 0 414 169 48 0 chr1 107589746 107589829 -174603835 - Tigger5 DNA MER2_type 0 2323 2237 319 317 126 52 chr1 107589987 107590092 -174603572 + L2 LINE L2 2485 2581 -732 1954 194 117 31 chr1 107590092 107590571 -174603093 - MLT2B1 LTR ERVL 0 520 1 319 317 126 52 chr1 107590571 107591219 -174602445 + L2 LINE L2 2581 3296 -17 825 117 0 0 chr1 107591223 107591351 -174602313 + (GGAA)n Simple_repeat Simple_repeat 1 128 0 2056 137 0 0 chr1 107592480 107592793 -174600871 - AluSx SINE Alu 0 313 1 250 211 69 4 chr1 107592813 107592887 -174600777 + MIR SINE MIR 69 144 -66 2783 82 3 6 chr1 107592903 107593268 -174600396 + THE1B LTR MaLR 1 364 0 450 270 38 87 chr1 107594556 107594619 -174599045 - MIR SINE MIR 0 262 197 2320 97 0 0 chr1 107594619 107594919 -174598745 - AluY SINE Alu -10 301 2 450 270 38 87 chr1 107594919 107595040 -174598624 - MIR SINE MIR -65 197 87 24 32 0 0 chr1 107595158 107595189 -174598475 + AT_rich Low_complexity Low_complexity 1 31 0 501 275 126 0 chr1 107595282 107595449 -174598215 + MER5A DNA MER1_type 1 188 -1 1914 180 115 22 chr1 107595511 107595887 -174597777 + MLT1D LTR MaLR 1 429 -76 939 64 41 177 chr1 107595887 107596107 -174597557 + MER30B DNA MER1_type 1 190 0 1914 180 115 22 chr1 107596107 107596192 -174597472 + MLT1D LTR MaLR 429 505 0 225 205 13 39 chr1 107596460 107596538 -174597126 + (TA)n Simple_repeat Simple_repeat 2 77 0 927 216 35 94 chr1 107596825 107597228 -174596436 - LTR37B LTR ERV1 0 468 90 2813 150 46 8 chr1 107597266 107597860 -174595804 - MER39 LTR ERV1 0 707 19 21 0 0 0 chr1 107597884 107597905 -174595759 + AT_rich Low_complexity Low_complexity 1 21 0 276 261 26 124 chr1 107599012 107599165 -174594499 + L2 LINE L2 3173 3310 -3 438 119 0 0 chr1 107599731 107599804 -174593860 + MER34C LTR ERV1 1 70 -472 1643 177 92 44 chr1 107599823 107600259 -174593405 + LTR2B LTR ERV1 34 490 0 2419 179 19 25 chr1 107600259 107600777 -174592887 + MER34B LTR ERV1 51 565 0 180 152 0 0 chr1 107601511 107601544 -174592120 + T-rich Low_complexity Low_complexity 1 33 0 727 300 68 14 chr1 107603830 107604050 -174589614 + MIR SINE MIR 31 262 0 216 359 0 13 chr1 107604219 107604297 -174589367 + L2 LINE L2 3233 3309 -4 4073 150 20 4 chr1 107604451 107605151 -174588513 + MER50 LTR ERV1 1 711 -23 1429 284 68 8 chr1 107605151 107605680 -174587984 + L1ME3 LINE L1 5514 6074 -88 1895 148 134 0 chr1 107605681 107606054 -174587610 - MSTA LTR MaLR -5 423 1 9119 149 7 42 chr1 107606054 107607689 -174585975 - MSTA-int LTR MaLR 0 1580 3 1964 146 144 5 chr1 107607691 107608067 -174585597 - MSTA LTR MaLR 0 428 1 343 217 36 0 chr1 107608071 107608154 -174585510 + L1ME3 LINE L1 6077 6162 0 660 303 83 18 chr1 107608169 107608624 -174585040 + L1ME4a LINE L1 5535 6019 -102 206 275 0 14 chr1 107609132 107609201 -174584463 + GA-rich Low_complexity Low_complexity 1 68 0 2047 217 71 46 chr1 107609601 107610879 -174582785 - L1MC4 LINE L1 -120 7688 6450 207 309 0 0 chr1 107611141 107611196 -174582468 + GA-rich Low_complexity Low_complexity 2 56 0 261 340 94 60 chr1 107611433 107611848 -174581816 - L2 LINE L2 -1023 2291 1863 301 253 11 22 chr1 107612883 107612974 -174580690 + L1MC4 LINE L1 6614 6703 -1339 380 157 45 8 chr1 107613065 107613199 -174580465 + (TA)n Simple_repeat Simple_repeat 2 140 0 21 0 0 0 chr1 107613219 107613240 -174580424 + AT_rich Low_complexity Low_complexity 1 21 0 411 147 53 7 chr1 107613246 107613396 -174580268 + (TA)n Simple_repeat Simple_repeat 1 157 0 209 237 34 0 chr1 107614338 107614397 -174579267 + (CATA)n Simple_repeat Simple_repeat 4 64 0 22 0 0 0 chr1 107615305 107615327 -174578337 + AT_rich Low_complexity Low_complexity 1 22 0 281 349 94 73 chr1 107615844 107616036 -174577628 + L2 LINE L2 2977 3172 -100 463 256 34 34 chr1 107616235 107616411 -174577253 + L1ME1 LINE L1 1914 2089 -4307 780 264 18 43 chr1 107616431 107616473 -174577191 + L1ME1 LINE L1 3431 3473 -2742 1980 176 0 0 chr1 107616473 107616774 -174576890 - AluJb SINE Alu -11 301 1 780 264 18 43 chr1 107616774 107617057 -174576607 + L1ME1 LINE L1 3473 3748 -2467 333 250 24 16 chr1 107617066 107617190 -174576474 + L1ME1 LINE L1 4286 4410 -1805 1603 230 55 47 chr1 107617197 107617775 -174575889 + L1ME1 LINE L1 5647 6229 -6 470 315 27 10 chr1 107617856 107618154 -174575510 + L1MEd LINE L1 1312 1614 -4916 307 301 111 35 chr1 107618200 107618426 -174575238 + L1MEd LINE L1 1852 2094 -4446 521 339 75 8 chr1 107619012 107619251 -174574413 + MIR SINE MIR 2 256 -6 5142 159 20 7 chr1 107620458 107621679 -174571985 + L1MA7 LINE L1 5059 6291 0 278 312 163 17 chr1 107623166 107623461 -174570203 + L2 LINE L2 2324 2661 -653 182 323 131 30 chr1 107624121 107624220 -174569444 - MIR SINE MIR 0 262 154 331 235 15 0 chr1 107624294 107624362 -174569302 - MIR SINE MIR -104 158 90 1018 246 72 28 chr1 107624362 107624724 -174568940 + MLT1B LTR MaLR 1 378 -12 2304 113 0 0 chr1 107625004 107625295 -174568369 - AluSx SINE Alu -21 291 1 542 286 35 35 chr1 107677575 107677893 -174515771 + HAL1 LINE L1 1367 1684 -823 356 287 61 37 chr1 107677927 107678091 -174515573 + HAL1 LINE L1 2057 2224 -283 3667 45 4 0 chr1 107678112 107678595 -174515069 + L1P LINE L1 3411 3895 -2251 1081 178 13 13 chr1 107678699 107678930 -174514734 + L1MB8 LINE L1 5948 6178 0 433 222 0 0 chr1 107679886 107679976 -174513688 - Tigger5 DNA MER2_type 0 2323 2234 1569 203 14 3 chr1 107681128 107681487 -174512177 + L1M4c LINE L1 1424 1786 -4598 2771 23 0 0 chr1 107681487 107681797 -174511867 + AluY SINE Alu 1 310 -1 282 352 63 21 chr1 107682115 107682257 -174511407 - MIR3 SINE MIR -47 161 14 600 263 223 3 chr1 107684569 107684888 -174508776 + LTR16C LTR ERVL 89 477 -14 282 316 112 66 chr1 107685002 107685198 -174508466 - L3 LINE CR1 -278 1299 1095 21 0 0 0 chr1 107685510 107685531 -174508133 + AT_rich Low_complexity Low_complexity 1 21 0 350 74 19 0 chr1 107688122 107688176 -174505488 + (TC)n Simple_repeat Simple_repeat 2 56 0 195 42 0 0 chr1 107688176 107688200 -174505464 + (CA)n Simple_repeat Simple_repeat 1 24 0 1108 166 65 23 chr1 107688894 107689201 -174504463 - MER33 DNA MER1_type 0 324 5 269 289 55 70 chr1 107690489 107690617 -174503047 + L2 LINE L2 3187 3312 -1 199 328 69 17 chr1 107690970 107691086 -174502578 - L3 LINE CR1 -247 1330 1209 278 281 59 67 chr1 107691334 107691469 -174502195 + MER5A DNA MER1_type 56 189 0 407 273 117 8 chr1 107692098 107692226 -174501438 - L2 LINE L2 -5 3308 3167 2014 185 8 3 chr1 107693162 107693525 -174500139 - MLT1A1 LTR MaLR 0 365 1 4076 215 84 39 chr1 107693525 107694602 -174499062 - MLT1A1-int LTR MaLR 0 1735 610 666 202 167 89 chr1 107694612 107694676 -174498988 + MLT1A1 LTR MaLR 4 62 -303 2387 170 22 22 chr1 107694676 107695136 -174498528 + LOR1b LTR ERV1 2 461 0 666 202 167 89 chr1 107695136 107695407 -174498257 + MLT1A1 LTR MaLR 62 365 0 2772 211 20 0 chr1 107695408 107696004 -174497660 - MLT1A1-int LTR MaLR -1127 608 1 1327 229 81 23 chr1 107696004 107696349 -174497315 - MLT1A1 LTR MaLR 0 365 1 1840 139 53 39 chr1 107696449 107696808 -174496856 - THE1B LTR MaLR 0 364 1 195 129 0 0 chr1 107697268 107697299 -174496365 + (A)n Simple_repeat Simple_repeat 1 31 0 762 218 59 23 chr1 107697349 107697668 -174495996 + MSTD LTR MaLR 1 394 -2 367 193 34 23 chr1 107697668 107697735 -174495929 + MSTB2 LTR MaLR 390 457 0 1592 216 37 16 chr1 107697950 107698460 -174495204 - L1M4c LINE L1 -3941 2443 1923 2490 77 11 145 chr1 107698574 107699044 -174494620 - LTR12 LTR ERV1 -307 407 1 645 176 8 0 chr1 107699233 107699352 -174494312 + MER58B DNA MER1_type 214 333 -8 918 342 72 20 chr1 107699440 107699928 -174493736 - MLT1K LTR MaLR -74 514 2 244 105 100 49 chr1 107700112 107700173 -174493491 - L1M3 LINE L1 -725 5441 5380 2229 113 0 10 chr1 107700195 107700495 -174493169 - AluSc SINE Alu -12 297 1 2321 202 61 75 chr1 107700999 107701701 -174491963 + L1MA9 LINE L1 5621 6312 0 23 68 0 0 chr1 107701822 107701866 -174491798 + AT_rich Low_complexity Low_complexity 1 44 0 1117 127 7 0 chr1 107702546 107702813 -174490851 - L1PA16 LINE L1 -9 6157 5840 612 250 36 6 chr1 107703068 107703236 -174490428 - MIR SINE MIR -59 203 31 182 234 187 37 chr1 107703283 107703390 -174490274 + L2 LINE L2 446 568 -2746 396 291 123 18 chr1 107703485 107703712 -174489952 - L3b LINE CR1 -229 1354 1104 34 65 0 0 chr1 107704978 107705040 -174488624 + AT_rich Low_complexity Low_complexity 1 62 0 456 344 117 9 chr1 107705119 107705445 -174488219 + L1MC4a LINE L1 5506 5866 -1942 823 231 9 9 chr1 107705467 107705696 -174487968 - HAL1 LINE L1 -401 2106 1878 381 327 9 0 chr1 107705705 107705812 -174487852 - HAL1 LINE L1 -1661 846 739 1721 177 5 96 chr1 107706619 107707048 -174486616 + MLT1B LTR MaLR 1 390 0 563 327 142 31 chr1 107708564 107709175 -174484489 + L2 LINE L2 2069 2747 -567 478 297 97 88 chr1 107709764 107710175 -174483489 + L2 LINE L2 2841 3255 -17 202 132 26 0 chr1 107710604 107710642 -174483022 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 212 217 24 36 chr1 107710892 107710975 -174482689 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 788 264 113 55 chr1 107711058 107711403 -174482261 - MLT1I LTR MaLR -40 369 5 408 246 8 63 chr1 107712173 107712299 -174481365 + MIR SINE MIR 118 236 -26 401 219 90 109 chr1 107712452 107712708 -174480956 - MER112 DNA MER1_type -2 254 4 1131 261 132 27 chr1 107713462 107713940 -174479724 + L2 LINE L2 361 888 -2426 1218 253 89 34 chr1 107714979 107715394 -174478270 + MLT1J1 LTR MaLR 9 446 0 697 309 98 32 chr1 107716267 107716734 -174476930 - HAL1 LINE L1 -813 1694 1186 1823 158 11 3 chr1 107716734 107717019 -174476645 - AluJb SINE Alu -25 287 1 697 309 98 32 chr1 107717019 107717081 -174476583 - HAL1 LINE L1 -1321 1186 1130 5553 109 77 29 chr1 107717081 107718199 -174475465 + MER11A LTR ERVK 1 1265 -1 2307 101 7 0 chr1 107718296 107718602 -174475062 - AluSp SINE Alu -5 308 1 343 308 62 43 chr1 107718612 107718820 -174474844 - HAL1 LINE L1 -1432 1075 864 1423 234 125 56 chr1 107719656 107720264 -174473400 - MLT1E1 LTR MaLR -4 650 1 604 290 44 26 chr1 107720266 107720538 -174473126 - LTR16A LTR ERVL -15 435 159 5265 236 66 30 chr1 107723819 107723891 -174469773 - L1ME1 LINE L1 -9 6437 6369 2842 128 14 0 chr1 107723891 107724313 -174469351 - MSTA LTR MaLR 0 428 1 5265 236 66 30 chr1 107724313 107725079 -174468585 - L1ME1 LINE L1 -77 6369 5631 2149 128 3 0 chr1 107725079 107725375 -174468289 - AluSq SINE Alu -16 297 1 5265 236 66 30 chr1 107725375 107726999 -174466665 - L1ME1 LINE L1 -815 5631 3762 273 220 30 10 chr1 107727000 107727100 -174466564 + (TA)n Simple_repeat Simple_repeat 2 103 0 339 252 0 0 chr1 107727103 107727206 -174466458 - L1ME1 LINE L1 -2674 3752 3650 * 540 246 72 42 chr1 107727186 107727553 -174466111 - L1ME1 LINE L1 -4713 1845 1311 695 264 92 41 chr1 107727844 107728139 -174465525 + L2 LINE L2 3004 3313 0 1674 154 77 6 chr1 107728493 107728804 -174464860 - MER1B DNA MER1_type -6 333 1 632 264 0 66 chr1 107728998 107729195 -174464469 - L2 LINE L2 0 3313 3130 2740 10 0 0 chr1 107730313 107730613 -174463051 - AluYa5 SINE Alu -11 300 1 891 317 121 17 chr1 107730792 107731212 -174462452 - L2 LINE L2 0 3313 2850 933 235 5 25 chr1 107731223 107731423 -174462241 - MLT1A1 LTR MaLR -8 357 162 241 276 17 0 chr1 107731430 107731488 -174462176 - MIR3 SINE MIR -21 187 129 400 290 0 0 chr1 107731516 107731609 -174462055 - L2 LINE L2 0 3313 3221 1604 186 13 75 chr1 107731867 107732254 -174461410 + MLT1A1 LTR MaLR 1 363 -2 1034 287 78 14 chr1 107732474 107732833 -174460831 - ERVL LTR ERVL -2979 2785 2404 318 381 32 11 chr1 107734139 107734420 -174459244 - ERVL LTR ERVL -5042 722 436 3050 174 56 9 chr1 107734807 107735341 -174458323 - MLT1F1 LTR MaLR -8 559 1 318 276 112 84 chr1 107735443 107735918 -174457746 - LTR33A LTR ERVL -307 488 1 2098 282 23 61 chr1 107737055 107738129 -174455535 + L2 LINE L2 2284 3313 0 268 242 45 0 chr1 107738157 107738223 -174455441 + MIR3 SINE MIR 129 197 -11 192 271 71 0 chr1 107738880 107738950 -174454714 + L3b LINE CR1 1254 1328 -255 391 211 53 0 chr1 107738957 107739033 -174454631 - L2 LINE L2 0 3313 3234 582 345 72 51 chr1 107739060 107739961 -174453703 - L2 LINE L2 -4 3268 2313 24 0 0 0 chr1 107740484 107740508 -174453156 + AT_rich Low_complexity Low_complexity 1 24 0 225 289 250 0 chr1 107740628 107740732 -174452932 + L2 LINE L2 3143 3272 0 359 299 53 7 chr1 107740814 107740957 -174452707 - MIR SINE MIR -62 146 15 21 0 0 0 chr1 107742393 107742414 -174451250 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr1 107743823 107743873 -174449791 + AT_rich Low_complexity Low_complexity 1 50 0 224 291 13 13 chr1 107745020 107745099 -174448565 + L2 LINE L2 3235 3313 0 432 235 49 10 chr1 107745564 107745666 -174447998 - MER81 DNA DNA 0 114 9 196 231 200 0 chr1 107745963 107746028 -174447636 - MIR SINE MIR -178 84 7 350 319 92 6 chr1 107746785 107746948 -174446716 + MIR SINE MIR 84 260 -2 303 329 152 13 chr1 107746950 107747108 -174446556 + L3 LINE CR1 1345 1524 -53 1414 128 50 0 chr1 107747755 107747974 -174445690 - MER30 DNA MER1_type 0 230 1 805 263 140 3 chr1 107748322 107748679 -174444985 + L1M4 LINE L1 3690 4095 -2051 34 55 0 0 chr1 107748680 107748735 -174444929 + AT_rich Low_complexity Low_complexity 1 55 0 6946 62 6 0 chr1 107748767 107750365 -174443299 + L1PA7 LINE L1 4546 6148 -6 875 269 44 47 chr1 107750875 107751173 -174442491 - LTR33A LTR ERVL -2 521 225 254 265 0 24 chr1 107751199 107751282 -174442382 - LTR33A LTR ERVL -442 81 1 442 337 61 86 chr1 107752017 107752492 -174441172 - L2 LINE L2 0 3272 2810 323 271 12 24 chr1 107752580 107752665 -174440999 - L2 LINE L2 -50 3222 3139 354 369 24 12 chr1 107752823 107752991 -174440673 - L2 LINE L2 -239 3033 2864 25 0 0 0 chr1 107753966 107753991 -174439673 + AT_rich Low_complexity Low_complexity 1 25 0 192 325 133 10 chr1 107754214 107754327 -174439337 + MIR SINE MIR 20 144 -93 3304 226 26 5 chr1 107754397 107755204 -174438460 - L1PA15 LINE L1 -2497 3649 2826 8470 193 66 11 chr1 107755205 107757670 -174435994 + L1PA15 LINE L1 3639 6159 -6 208 269 343 0 chr1 107757671 107757738 -174435926 - L2 LINE L2 -19 3253 3164 419 290 67 85 chr1 107757780 107758004 -174435660 - MIR SINE MIR -12 250 31 24 32 0 0 chr1 107758064 107758095 -174435569 + AT_rich Low_complexity Low_complexity 1 31 0 1781 247 106 17 chr1 107758806 107759458 -174434206 - L1ME3 LINE L1 -112 6050 5341 1875 204 40 78 chr1 107759458 107759983 -174433681 + MLT1D LTR MaLR 1 505 0 5083 168 54 16 chr1 107760085 107760559 -174433105 - L1MA9 LINE L1 0 6312 5857 255 103 0 0 chr1 107760559 107760598 -174433066 + (TG)n Simple_repeat Simple_repeat 2 40 0 5083 168 54 16 chr1 107760598 107761721 -174431943 - L1MA9 LINE L1 -455 5857 4651 2678 268 67 27 chr1 107761707 107763098 -174430566 - L1ME3 LINE L1 -2406 3740 2294 * 1217 263 106 44 chr1 107763283 107764172 -174429492 + HAL1b LINE L1 311 1341 -7 240 289 93 31 chr1 107764712 107764809 -174428855 - MIR SINE MIR -82 180 78 288 0 0 0 chr1 107765164 107765196 -174428468 + (A)n Simple_repeat Simple_repeat 1 32 0 417 259 92 40 chr1 107766165 107766339 -174427325 - MIR SINE MIR -1 261 79 2492 41 0 14 chr1 107766457 107766777 -174426887 - AluY SINE Alu 0 311 2 205 222 93 0 chr1 107768873 107768927 -174424737 - L2 LINE L2 -60 3253 3195 229 326 97 61 chr1 107769286 107770105 -174423559 - L2 LINE L2 -103 3169 2323 2014 157 43 3 chr1 107770468 107770818 -174422846 + MER47A DNA MER2_type 3 366 0 341 286 174 0 chr1 107771065 107771226 -174422438 - MIR SINE MIR -73 189 1 315 0 0 0 chr1 107772394 107772429 -174421235 + (CA)n Simple_repeat Simple_repeat 1 35 0 219 265 0 0 chr1 107773252 107773301 -174420363 + MIR SINE MIR 81 129 -133 440 77 15 0 chr1 107774365 107774430 -174419234 + (TG)n Simple_repeat Simple_repeat 1 66 0 243 267 0 0 chr1 107775154 107775240 -174418424 + CT-rich Low_complexity Low_complexity 4 89 0 251 320 52 0 chr1 107776544 107776641 -174417023 - MLT1L LTR MaLR -2 613 512 317 327 51 32 chr1 107776913 107777069 -174416595 - MLT1K LTR MaLR -412 176 18 372 22 0 0 chr1 107777172 107777217 -174416447 + (CA)n Simple_repeat Simple_repeat 2 46 0 455 237 179 32 chr1 107777671 107777861 -174415803 + L2 LINE L2 3096 3313 0 238 288 17 0 chr1 107779270 107779329 -174414335 - MIR SINE MIR -67 141 82 189 358 25 0 chr1 107780882 107780963 -174412701 + L3 LINE CR1 95 177 -1400 1603 169 110 8 chr1 107781398 107781771 -174411893 - MER74A LTR ERVL -27 531 121 1766 203 11 11 chr1 107781806 107782170 -174411494 + MLT1A1 LTR MaLR 1 364 -1 232 208 278 0 chr1 107782422 107782494 -174411170 + MLT1I LTR MaLR 315 406 -3 225 230 149 14 chr1 107782510 107782584 -174411080 + MIR SINE MIR 176 259 -3 488 294 21 7 chr1 107782826 107782969 -174410695 - MIR SINE MIR -114 148 4 511 284 55 58 chr1 107783396 107783777 -174409887 + MLT1L LTR MaLR 214 593 -22 306 253 118 32 chr1 107783846 107784067 -174409597 - L1ME LINE L1 -333 5788 5549 387 267 34 41 chr1 107784553 107784699 -174408965 - MIR SINE MIR -109 153 9 450 279 91 43 chr1 107785044 107785252 -174408412 + MIR SINE MIR 32 249 -13 3396 73 2 0 chr1 107785264 107785718 -174407946 + L1P5 LINE L1 5333 5787 -364 305 234 45 42 chr1 107785948 107786131 -174407533 + MLT1J2 LTR MaLR 58 237 -172 819 156 0 0 chr1 107786198 107786320 -174407344 - FLAM_C SINE Alu -19 124 3 1047 249 0 4 chr1 107786355 107786580 -174407084 + Charlie1 DNA MER1_type 2 225 -2536 628 170 7 35 chr1 107786578 107786719 -174406945 + Charlie1 DNA MER1_type 2624 2760 -1 * 29 78 0 0 chr1 107787307 107787371 -174406293 + AT_rich Low_complexity Low_complexity 1 64 0 2030 275 126 18 chr1 107787644 107788517 -174405147 - L2 LINE L2 0 3313 2311 2150 160 28 3 chr1 107788517 107788873 -174404791 + MLT1A1 LTR MaLR 1 365 0 2030 275 126 18 chr1 107788873 107789073 -174404591 - L2 LINE L2 -1002 2311 2134 325 224 32 32 chr1 107789484 107789609 -174404055 - L1MB3 LINE L1 -1 6182 6058 * 2132 136 14 19 chr1 107789581 107789806 -174403858 - L1MA4 LINE L1 -288 6012 5788 2488 111 19 5 chr1 107789806 107790176 -174403488 + THE1C LTR MaLR 1 375 0 2132 136 14 19 chr1 107790176 107790311 -174403353 - L1MA4 LINE L1 -512 5788 5654 1075 94 6 6 chr1 107792625 107792785 -174400879 + L1PA8 LINE L1 6012 6171 -1 2671 93 21 8 chr1 107794038 107794413 -174399251 + MLT2A1 LTR ERVL 1 380 -64 291 326 62 8 chr1 107794649 107794778 -174398886 - MIR SINE MIR -70 192 57 260 342 63 0 chr1 107794993 107795072 -174398592 - L2 LINE L2 -33 3280 3197 1185 189 43 8 chr1 107795274 107795528 -174398136 + ORSL DNA AcHobo 1 263 -12 345 330 89 15 chr1 107798652 107798855 -174394809 + L3 LINE CR1 1073 1290 -287 274 287 0 11 chr1 107798897 107798984 -174394680 - MER117 DNA MER1_type -56 141 56 281 314 183 7 chr1 107799042 107799179 -174394485 + L3 LINE CR1 1298 1458 -119 2280 89 33 3 chr1 107799756 107800059 -174393605 + AluSx SINE Alu 1 312 0 195 385 31 21 chr1 107800062 107800158 -174393506 + L3 LINE CR1 1478 1574 -3 185 283 0 33 chr1 107800188 107800248 -174393416 - L3 LINE CR1 -351 1226 1169 511 220 29 58 chr1 107800402 107800489 -174393175 + MER69A DNA AcHobo 1 82 -2444 712 190 5 36 chr1 107800489 107800573 -174393091 + MER53 DNA DNA 1 86 -103 324 0 0 0 chr1 107800573 107800609 -174393055 + (TA)n Simple_repeat Simple_repeat 1 36 0 712 190 5 36 chr1 107800609 107800719 -174392945 + MER53 DNA DNA 86 189 0 511 220 29 58 chr1 107800719 107800804 -174392860 + MER69A DNA AcHobo 82 168 -9 388 256 113 6 chr1 107802332 107802492 -174391172 - MIR SINE MIR -10 252 76 747 277 27 18 chr1 107802716 107802936 -174390728 - MIR SINE MIR -2 260 39 258 211 0 18 chr1 107802981 107803038 -174390626 + MIR SINE MIR 204 259 -3 242 333 89 0 chr1 107803048 107803171 -174390493 - MIR SINE MIR -28 234 101 358 75 4 0 chr1 107803171 107803287 -174390377 - MADE1 DNA Mariner 0 80 3 1525 202 74 48 chr1 107804377 107804797 -174388867 - MLT1D LTR MaLR 0 505 75 559 217 54 68 chr1 107804850 107805071 -174388593 - MLT1C LTR MaLR -153 314 97 3421 58 37 2 chr1 107805071 107805500 -174388164 - MLT2A1 LTR ERVL 0 444 1 25599 72 7 1 chr1 107805500 107808902 -174384762 - HERVL-A1 LTR ERVL 0 5654 2234 1972 118 19 10 chr1 107808902 107809215 -174384449 - THE1C LTR MaLR -59 316 1 243 267 47 35 chr1 107809343 107809429 -174384235 + MIR3 SINE MIR 69 155 -53 1688 92 9 13 chr1 107809478 107809705 -174383959 + AluSg/x SINE Alu 74 299 -10 800 203 12 0 chr1 107810941 107811104 -174382560 + MER2 DNA MER2_type 4 168 -177 335 239 343 0 chr1 107811216 107811350 -174382314 + MER5A DNA MER1_type 9 188 -1 287 309 44 15 chr1 107811384 107811520 -174382144 - MLT1L LTR MaLR -73 542 403 384 278 104 0 chr1 107811839 107811983 -174381681 + MER103 DNA DNA 7 165 -1 271 219 62 0 chr1 107812053 107812117 -174381547 - MER58 DNA MER1_type -62 279 212 235 244 0 0 chr1 107812130 107812175 -174381489 - MER58 DNA MER1_type -170 45 1 283 183 65 0 chr1 107812269 107812362 -174381302 + (TA)n Simple_repeat Simple_repeat 1 99 0 264 364 17 8 chr1 107812852 107812970 -174380694 + L2 LINE L2 3158 3276 -37 195 152 0 0 chr1 107813381 107813427 -174380237 + (CA)n Simple_repeat Simple_repeat 2 47 0 1456 194 96 26 chr1 107816880 107817225 -174376439 + MSTD LTR MaLR 26 394 -2 305 271 62 69 chr1 107817252 107817396 -174376268 + MIR SINE MIR 53 195 -67 243 315 14 0 chr1 107817420 107817493 -174376171 - L2 LINE L2 -2 3311 3238 251 297 16 0 chr1 107817912 107817976 -174375688 - L2 LINE L2 -2 3311 3247 1097 228 77 0 chr1 107818575 107818866 -174374798 + L1MB7 LINE L1 5851 6165 -19 286 340 0 9 chr1 107818936 107819042 -174374622 - MIR SINE MIR -124 138 34 329 220 33 22 chr1 107819680 107819771 -174373893 - MLT1K LTR MaLR -17 571 480 196 336 47 56 chr1 107820604 107820711 -174372953 - MIR SINE MIR -61 147 42 210 311 41 25 chr1 107821412 107821534 -174372130 + MIR SINE MIR 139 262 0 285 188 10 94 chr1 107821826 107821922 -174371742 - L1M LINE L1 -763 5405 5318 25 0 0 0 chr1 107821922 107821947 -174371717 + AT_rich Low_complexity Low_complexity 1 25 0 1967 152 0 0 chr1 107821947 107822237 -174371427 - AluSx SINE Alu -22 290 1 2313 211 12 25 chr1 107822237 107822292 -174371372 - L1 LINE L1 -815 5331 5277 2765 62 0 43 chr1 107822292 107822528 -174371136 + THE1A LTR MaLR 1 217 -138 2143 125 6 3 chr1 107822528 107822839 -174370825 + AluSx SINE Alu 1 312 0 2765 62 0 43 chr1 107822839 107822973 -174370691 + THE1A LTR MaLR 217 355 0 2313 211 12 25 chr1 107822973 107823518 -174370146 - L1 LINE L1 -869 5277 4739 3260 193 29 47 chr1 107823521 107823744 -174369920 + L1MA9 LINE L1 5396 5621 -691 5325 82 112 1 chr1 107823744 107824488 -174369176 - LTR12 LTR ERV1 0 826 1 3260 193 29 47 chr1 107824488 107824558 -174369106 + L1MA9 LINE L1 5621 5691 -621 2330 100 0 3 chr1 107824558 107824867 -174368797 + AluSc SINE Alu 2 309 0 3260 193 29 47 chr1 107824867 107824969 -174368695 + L1MA9 LINE L1 5691 5793 -519 180 77 0 0 chr1 107824969 107824995 -174368669 + (CA)n Simple_repeat Simple_repeat 1 26 0 3260 193 29 47 chr1 107824995 107825492 -174368172 + L1MA9 LINE L1 5793 6274 -38 2035 236 91 47 chr1 107825894 107826622 -174367042 - MER21B LTR ERV1 -61 802 43 334 268 0 0 chr1 107826625 107826696 -174366968 - MER21B LTR ERV1 -774 89 19 230 253 48 24 chr1 107826703 107826786 -174366878 - MER21B LTR ERV1 -767 96 12 259 317 65 16 chr1 107826801 107826924 -174366740 + LTR16C LTR ERVL 351 479 -12 830 303 30 23 chr1 107827101 107827401 -174366263 + LTR16A LTR ERVL 116 417 -33 421 281 65 16 chr1 107827416 107827601 -174366063 + HERV16 LTR ERVL 3 196 -4800 2354 217 100 24 chr1 107827698 107827963 -174365701 + L1ME2 LINE L1 4800 5043 -1121 985 222 91 60 chr1 107827963 107828315 -174365349 - MLT1A1 LTR MaLR -2 363 1 2354 217 100 24 chr1 107828315 107829160 -174364504 + L1ME2 LINE L1 5043 5980 -184 4266 145 94 88 chr1 107829160 107830570 -174363094 - pTR5 LTR ERV1 -42 2396 745 569 278 17 6 chr1 107830570 107830750 -174362914 + L1ME2 LINE L1 5974 6155 -9 28 0 0 0 chr1 107831110 107831138 -174362526 + AT_rich Low_complexity Low_complexity 1 28 0 1561 261 86 29 chr1 107832890 107833377 -174360287 + MLT1F LTR MaLR 1 515 -27 318 26 0 0 chr1 107833895 107833934 -174359730 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr1 107836428 107836452 -174357212 + AT_rich Low_complexity Low_complexity 1 24 0 670 241 82 0 chr1 107840281 107840451 -174353213 + MER5A DNA MER1_type 3 186 -3 2586 152 11 5 chr1 107840644 107841085 -174352579 - L1PA16 LINE L1 -18 6148 5705 571 309 11 64 chr1 107841161 107841426 -174352238 + MIR SINE MIR 12 262 0 458 337 40 12 chr1 107842072 107842324 -174351340 + MIR SINE MIR 3 261 -1 990 287 38 3 chr1 107842329 107842740 -174350924 - LTR16B LTR ERVL -13 451 3 468 304 94 17 chr1 107842771 107842952 -174350712 + MER91A DNA MER1_type 2 196 0 213 65 0 0 chr1 107846396 107846427 -174347237 + (A)n Simple_repeat Simple_repeat 1 31 0 208 280 91 49 chr1 107847042 107847185 -174346479 - MIR SINE MIR -21 241 93 303 28 0 0 chr1 107848727 107848763 -174344901 + (TG)n Simple_repeat Simple_repeat 2 37 0 200 191 0 24 chr1 107849045 107849087 -174344577 + CT-rich Low_complexity Low_complexity 2 42 0 750 199 51 0 chr1 107849366 107849542 -174344122 - MER3 DNA MER1_type -10 199 15 336 292 29 15 chr1 107849628 107849765 -174343899 - L1ME4a LINE L1 -1 6120 5982 207 0 0 0 chr1 107849782 107849805 -174343859 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1345 169 45 26 chr1 107849805 107850072 -174343592 - L1PA15 LINE L1 -5 6160 5889 184 328 114 15 chr1 107850751 107850882 -174342782 + L2 LINE L2 2385 2528 -786 443 270 27 0 chr1 107851187 107851298 -174342366 - L2 LINE L2 0 3313 3200 180 204 0 56 chr1 107851458 107851512 -174342152 - L2 LINE L2 -1 3312 3262 209 311 54 0 chr1 107851698 107851772 -174341892 - MIR SINE MIR -165 97 20 190 254 159 0 chr1 107851813 107851876 -174341788 + L2 LINE L2 3241 3313 0 21 0 0 0 chr1 107852087 107852108 -174341556 + AT_rich Low_complexity Low_complexity 1 21 0 435 216 108 98 chr1 107853667 107853792 -174339872 + MIR SINE MIR 19 148 -114 2100 129 3 0 chr1 107853792 107854087 -174339577 + AluSp SINE Alu 1 296 -17 435 216 108 98 chr1 107854087 107854165 -174339499 + MIR SINE MIR 148 224 -38 242 289 132 9 chr1 107855712 107855826 -174337838 + MIR SINE MIR 124 251 -11 252 0 0 0 chr1 107856135 107856163 -174337501 + (TG)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chr1 107858326 107858359 -174335305 + AT_rich Low_complexity Low_complexity 1 33 0 505 292 39 90 chr1 107858834 107859321 -174334343 + MARNA DNA Mariner 15 476 -110 364 264 33 0 chr1 107860633 107860724 -174332940 + MIR3 SINE MIR 111 204 -4 1686 212 8 27 chr1 107861158 107861526 -174332138 - MLT1A1 LTR MaLR 0 365 5 5637 228 186 25 chr1 107861579 107862865 -174330799 + L1M3e LINE L1 1 1079 -6028 1857 187 0 0 chr1 107862865 107863165 -174330499 - AluSx SINE Alu -12 300 1 5637 228 186 25 chr1 107863165 107864116 -174329548 + L1M3e LINE L1 1079 2597 -4510 4786 168 14 16 chr1 107864237 107864454 -174329210 - L1 LINE L1 -745 5401 5185 195 69 0 0 chr1 107864454 107864483 -174329181 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4786 168 14 16 chr1 107864483 107865228 -174328436 - L1 LINE L1 -961 5185 4441 965 224 6 105 chr1 107865234 107865341 -174328323 + MLT1A2 LTR MaLR 93 209 -165 297 0 0 0 chr1 107865341 107865374 -174328290 + (TG)n Simple_repeat Simple_repeat 1 33 0 965 224 6 105 chr1 107865374 107865579 -174328085 + MLT1A2 LTR MaLR 209 374 0 545 137 0 0 chr1 107865661 107865756 -174327908 - L1M2 LINE L1 -859 5432 5338 296 245 80 49 chr1 107866039 107866173 -174327491 - MIR SINE MIR -64 144 31 200 333 90 0 chr1 107866597 107866675 -174326989 + L3 LINE CR1 1033 1117 -460 267 31 0 0 chr1 107866724 107866756 -174326908 + (T)n Simple_repeat Simple_repeat 1 32 0 1030 234 71 48 chr1 107867343 107867697 -174325967 - MER21B LTR ERV1 -112 751 390 2768 278 118 38 chr1 107867768 107868967 -174324697 - L2 LINE L2 -672 2642 1347 2113 170 32 27 chr1 107868968 107869518 -174324146 - MLT2A2 LTR ERVL 0 554 1 293 284 0 0 chr1 107869532 107869606 -174324058 - L2 LINE L2 -1978 1336 1263 2443 285 69 48 chr1 107869644 107870609 -174323055 - L2 LINE L2 -2014 1300 315 486 206 43 0 chr1 107873574 107873666 -174319998 - MER5A DNA MER1_type -84 105 10 1424 143 30 43 chr1 107873683 107874011 -174319653 - MER33 DNA MER1_type 0 324 1 191 293 107 0 chr1 107874473 107874548 -174319116 + MIR SINE MIR 168 250 -12 200 389 0 40 chr1 107876918 107877044 -174316620 - MIR SINE MIR -108 154 34 25 31 0 0 chr1 107877064 107877096 -174316568 + AT_rich Low_complexity Low_complexity 1 32 0 416 298 87 6 chr1 107877139 107877300 -174316364 - MIR SINE MIR -49 213 40 294 302 70 3 chr1 107877334 107877514 -174316150 + MIR SINE MIR 24 260 -2 338 194 0 118 chr1 107878282 107878338 -174315326 + MIR3 SINE MIR 106 148 -60 646 225 178 16 chr1 107878338 107878529 -174315135 + MER58A DNA MER1_type 2 223 -1 338 194 0 118 chr1 107878529 107878565 -174315099 + MIR3 SINE MIR 148 187 -21 * 511 244 55 69 chr1 107878561 107878778 -174314886 + MIR SINE MIR 48 261 -1 1218 216 102 0 chr1 107878824 107879079 -174314585 + AluJo SINE Alu 1 281 -31 251 387 88 7 chr1 107880748 107880885 -174312779 - L2 LINE L2 0 3272 3125 189 107 0 0 chr1 107882097 107882125 -174311539 + (T)n Simple_repeat Simple_repeat 1 28 0 2508 33 0 7 chr1 107883179 107883482 -174310182 - L1PA4 LINE L1 0 6155 5855 404 284 93 66 chr1 107883714 107883859 -174309805 + MIR SINE MIR 7 160 -102 2338 88 3 0 chr1 107883859 107884156 -174309508 + AluSp SINE Alu 3 300 -13 404 284 93 66 chr1 107884156 107884246 -174309418 + MIR SINE MIR 160 246 -16 334 89 0 0 chr1 107885498 107885543 -174308121 - MSTB2 LTR MaLR 0 457 413 643 230 84 69 chr1 107885543 107885852 -174307812 - MST-int LTR MaLR -736 915 605 2797 136 69 10 chr1 107885853 107886332 -174307332 - MER4B LTR ERV1 -103 507 1 1972 207 68 7 chr1 107886332 107886771 -174306893 - MSTD-int LTR MaLR -1268 467 2 1664 202 40 11 chr1 107886773 107887149 -174306515 - MSTD LTR MaLR 0 396 10 313 260 10 60 chr1 107887305 107887405 -174306259 + MIR SINE MIR 87 181 -81 1773 185 0 6 chr1 107887458 107887772 -174305892 + AluJb SINE Alu 1 312 0 388 311 102 0 chr1 107888356 107888562 -174305102 - LTR33A LTR ERVL 0 523 297 720 275 194 13 chr1 107888567 107888949 -174304715 - LTR50 LTR ERVL -344 451 1 407 316 88 16 chr1 107889307 107889500 -174304164 - MIR3 SINE MIR -1 207 1 284 130 22 0 chr1 107890010 107890056 -174303608 + MLT2B2 LTR ERVL 1 47 -468 2020 174 15 57 chr1 107890157 107890559 -174303105 + MLT2B2 LTR ERVL 3 387 -128 296 214 89 45 chr1 107890583 107890695 -174302969 - MIR3 SINE MIR -1 207 91 722 135 0 95 chr1 107890695 107890798 -174302866 + MLT2B2 LTR ERVL 382 468 -47 231 36 0 0 chr1 107890798 107890826 -174302838 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 722 135 0 95 chr1 107890826 107890870 -174302794 + MLT2B2 LTR ERVL 468 515 0 305 335 181 14 chr1 107891399 107891620 -174302044 - L2 LINE L2 -997 2317 2060 1421 191 38 14 chr1 107891626 107891950 -174301714 - MER61B LTR ERV1 0 425 1 180 0 0 0 chr1 107892256 107892276 -174301388 + (A)n Simple_repeat Simple_repeat 1 20 0 1325 189 176 24 chr1 107893045 107893556 -174300108 + MER4A LTR ERV1 1 446 -19 2096 96 3 7 chr1 107894565 107894907 -174298757 - AluSq SINE Alu 0 343 3 312 319 35 43 chr1 107894908 107895140 -174298524 - L2 LINE L2 -11 3302 3073 2077 81 3 33 chr1 107895166 107895473 -174298191 - L1PB1 LINE L1 -1 6150 5853 376 309 69 56 chr1 107945700 107945988 -174247676 - L3 LINE CR1 -726 851 560 22 35 0 0 chr1 107946452 107946481 -174247183 + AT_rich Low_complexity Low_complexity 1 29 0 734 282 26 0 chr1 107946544 107946739 -174246925 + MER20 DNA MER1_type 20 219 0 446 248 90 60 chr1 107947125 107947424 -174246240 - LTR16A1 LTR ERVL 0 457 150 30 27 0 0 chr1 107948105 107948142 -174245522 + AT_rich Low_complexity Low_complexity 1 37 0 1132 214 115 54 chr1 107948566 107948939 -174244725 + MSTD LTR MaLR 1 396 0 555 236 61 14 chr1 107949432 107949580 -174244084 - MLT1J LTR MaLR -316 195 41 300 186 29 0 chr1 107949770 107949840 -174243824 - L1MA10 LINE L1 -1 6333 6262 264 267 30 10 chr1 107949842 107949943 -174243721 + (TATATG)n Simple_repeat Simple_repeat 3 105 0 10008 192 4 13 chr1 107949988 107952018 -174241646 - L1P LINE L1 -1134 5012 3001 2504 65 0 3 chr1 107952863 107953171 -174240493 - AluY SINE Alu -4 307 1 2564 180 22 30 chr1 107953505 107954044 -174239620 - L1MB7 LINE L1 -1 6183 5649 1720 162 28 7 chr1 107954047 107954451 -174239213 - L1MB7 LINE L1 -594 5590 5171 21 0 0 0 chr1 107954818 107954839 -174238825 + AT_rich Low_complexity Low_complexity 1 21 0 405 341 96 10 chr1 107954898 107955191 -174238473 + L1 LINE L1 4277 4594 -1552 209 228 0 51 chr1 107955308 107955387 -174238277 + CT-rich Low_complexity Low_complexity 3 77 0 186 189 0 0 chr1 107955410 107955447 -174238217 + CT-rich Low_complexity Low_complexity 2 38 0 1307 152 50 115 chr1 107957570 107957971 -174235693 - THE1C LTR MaLR 0 375 1 9224 136 12 53 chr1 107957979 107959195 -174234469 - THE1C-int LTR MaLR -8 1572 440 1863 123 15 0 chr1 107959195 107959455 -174234209 - AluSx SINE Alu -48 264 1 9224 136 12 53 chr1 107959455 107959875 -174233789 - THE1C-int LTR MaLR -1140 440 4 1798 161 49 27 chr1 107959878 107960245 -174233419 - THE1C LTR MaLR 0 375 1 367 342 111 29 chr1 107960291 107960671 -174232993 + L2 LINE L2 2164 2574 -740 201 229 0 0 chr1 107960749 107960797 -174232867 + CT-rich Low_complexity Low_complexity 2 49 0 267 227 0 0 chr1 107960910 107960976 -174232688 + CT-rich Low_complexity Low_complexity 3 68 0 320 260 41 8 chr1 107960992 107961115 -174232549 - L1ME4a LINE L1 -41 6080 5954 21 0 0 0 chr1 107961260 107961281 -174232383 + AT_rich Low_complexity Low_complexity 1 21 0 823 323 35 41 chr1 107961951 107962437 -174231227 - MARNA DNA Mariner -76 510 28 254 256 51 44 chr1 107962447 107962584 -174231080 - L1MC4 LINE L1 -1 8041 7904 390 259 133 13 chr1 107962771 107962929 -174230735 - L1ME2 LINE L1 -63 6101 5925 1087 125 7 0 chr1 107962929 107963081 -174230583 + AluSg/x SINE Alu 142 294 -16 982 276 143 10 chr1 107963081 107963571 -174230093 - L1MD2 LINE L1 -431 5862 5308 1054 186 24 119 chr1 107963584 107963912 -174229752 + MER82 DNA MER2_type 1 297 -356 1715 274 106 29 chr1 107963940 107965667 -174227997 - L1MD2 LINE L1 -3441 2639 753 546 81 0 0 chr1 107965667 107965741 -174227923 + MADE1 DNA Mariner 1 74 -6 1125 290 33 78 chr1 107965741 107966473 -174227191 - L1MD2 LINE L1 -5316 754 56 207 160 69 69 chr1 107966615 107966759 -174226905 + (TTATA)n Simple_repeat Simple_repeat 2 145 0 233 353 92 84 chr1 107966816 107967065 -174226599 + L2 LINE L2 3001 3251 -21 374 240 25 41 chr1 107967088 107967209 -174226455 - MIR SINE MIR -81 181 63 239 265 0 0 chr1 107969513 107969562 -174224102 - L2 LINE L2 -7 3265 3217 1047 199 106 71 chr1 107969596 107970048 -174223616 + LTR37B LTR ERV1 1 468 0 220 303 25 76 chr1 107970245 107970364 -174223300 + L2 LINE L2 3201 3313 0 582 328 88 3 chr1 107970990 107971274 -174222390 + L2 LINE L2 2975 3282 -31 1014 191 11 0 chr1 107971291 107971469 -174222195 + MER82 DNA MER2_type 17 196 -457 1757 235 22 39 chr1 107971765 107971927 -174221737 + MER82 DNA MER2_type 199 362 -291 2024 110 7 36 chr1 107971927 107972236 -174221428 - AluSx SINE Alu -10 302 3 1757 235 22 39 chr1 107972236 107972532 -174221132 + MER82 DNA MER2_type 362 649 -4 2617 215 48 6 chr1 107972755 107973402 -174220262 - L1P LINE L1 -3167 2979 2306 1271 249 101 8 chr1 107973408 107973731 -174219933 - L1M4 LINE L1 -2667 3479 3091 2032 138 0 13 chr1 107973731 107974060 -174219604 - AluSg SINE Alu 0 310 1 1271 249 101 8 chr1 107974060 107974243 -174219421 - L1M4 LINE L1 -3055 3091 2926 275 191 0 48 chr1 107974214 107974298 -174219366 - L1M4 LINE L1 -1119 5027 4948 * 23 54 0 0 chr1 107974299 107974336 -174219328 + AT_rich Low_complexity Low_complexity 1 37 0 604 260 54 10 chr1 107974650 107974854 -174218810 + L1ME3 LINE L1 5625 5837 -325 247 338 29 29 chr1 107975732 107975871 -174217793 + L2 LINE L2 2537 2675 -639 1875 98 0 107 chr1 107976226 107976563 -174217101 - AluSx SINE Alu -1 301 1 2126 117 3 10 chr1 107977044 107977351 -174216313 + AluSq SINE Alu 1 305 -8 438 353 30 0 chr1 107977672 107977805 -174215859 + L2 LINE L2 3127 3263 -9 295 336 138 31 chr1 107977999 107978383 -174215281 + L2 LINE L2 1881 2305 -1009 200 317 0 90 chr1 107978641 107978786 -174214878 + L2 LINE L2 2718 2849 -465 365 298 86 7 chr1 107978940 107979091 -174214573 - L2 LINE L2 -5 3308 3146 217 385 94 0 chr1 107979209 107979326 -174214338 + L2 LINE L2 3144 3271 -1 1245 60 6 16 chr1 107981070 107981252 -174212412 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 283 279 34 57 chr1 107984641 107984797 -174208867 - MLT1L LTR MaLR -243 275 137 4040 164 49 31 chr1 107985121 107986043 -174207621 - L1MA4A LINE L1 -28 6275 5277 10296 240 49 28 chr1 107986045 107988330 -174205334 - L1 LINE L1 -1268 5580 3345 2279 171 31 0 chr1 107988330 107988745 -174204919 - MSTA LTR MaLR 0 428 1 10296 240 49 28 chr1 107988745 107991817 -174201847 - L1 LINE L1 -3503 3345 1 27 0 0 0 chr1 107992389 107992416 -174201248 + AT_rich Low_complexity Low_complexity 1 27 0 183 333 58 11 chr1 107993006 107993093 -174200571 - MIR SINE MIR -90 172 82 34 72 0 0 chr1 107994145 107994214 -174199450 + AT_rich Low_complexity Low_complexity 1 69 0 1270 194 112 8 chr1 107994519 107994777 -174198887 - AluJb SINE Alu -13 299 15 536 245 38 76 chr1 107994793 107994977 -174198687 + L2 LINE L2 3137 3313 0 414 202 139 0 chr1 107995209 107995338 -174198326 + L1ME2 LINE L1 5019 5165 -981 735 259 48 44 chr1 107995380 107995674 -174197990 + L1ME2 LINE L1 5860 6154 -10 254 314 111 41 chr1 107995751 107995843 -174197821 + L1ME2 LINE L1 3936 4020 -2126 1452 119 26 13 chr1 107995843 107996070 -174197594 - MER30 DNA MER1_type 0 230 1 254 314 111 41 chr1 107996070 107996395 -174197269 + L1ME2 LINE L1 4020 4321 -1825 937 238 4 35 chr1 107996395 107996441 -174197223 + MER58A DNA MER1_type 1 47 -2373 2249 107 3 0 chr1 107996441 107996740 -174196924 - AluSp SINE Alu -13 300 1 937 238 4 35 chr1 107996740 107996924 -174196740 + MER58A DNA MER1_type 47 224 0 254 314 111 41 chr1 107996924 107997555 -174196109 + L1ME2 LINE L1 4321 5059 -1087 310 285 73 84 chr1 107997671 107997890 -174195774 + L1ME2 LINE L1 5267 5482 -877 1414 200 0 21 chr1 107997890 107998175 -174195489 - AluJo SINE Alu -30 282 4 310 285 73 84 chr1 107998175 107998299 -174195365 + L1ME2 LINE L1 5482 5606 -753 356 321 117 8 chr1 107998557 107998822 -174194842 + L1ME2 LINE L1 5617 5910 -254 438 36 0 0 chr1 107998910 107998966 -174194698 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1993 258 52 34 chr1 108000931 108001295 -174192369 - L1ME2 LINE L1 -15 6149 5766 180 0 0 0 chr1 108001295 108001315 -174192349 + (TA)n Simple_repeat Simple_repeat 1 20 0 1993 258 52 34 chr1 108001315 108001606 -174192058 - L1ME2 LINE L1 -398 5766 5482 240 258 62 109 chr1 108002855 108002983 -174190681 + MIR SINE MIR 91 212 -50 22 0 0 0 chr1 108003570 108003592 -174190072 + AT_rich Low_complexity Low_complexity 1 22 0 1641 250 47 18 chr1 108004747 108005259 -174188405 - L1ME1 LINE L1 -5 6161 5635 644 296 82 42 chr1 108005311 108005760 -174187904 - L1MEc LINE L1 -5792 604 138 38 39 0 0 chr1 108006022 108006074 -174187590 + AT_rich Low_complexity Low_complexity 1 52 0 318 357 42 0 chr1 108006100 108006243 -174187421 - MIR SINE MIR -56 206 58 303 273 52 104 chr1 108006410 108006564 -174187100 - L2 LINE L2 -188 3084 2939 285 349 52 96 chr1 108006859 108007183 -174186481 - L2 LINE L2 -8 3264 2955 282 308 113 0 chr1 108008078 108008211 -174185453 + MIR SINE MIR 97 244 -18 2582 116 25 19 chr1 108008623 108009054 -174184610 - MER61C LTR ERV1 0 434 1 2077 141 5 25 chr1 108010155 108010523 -174183141 + MER46B DNA MER2_type 1 236 0 802 235 37 37 chr1 108010550 108010767 -174182897 - MER20 DNA MER1_type -1 218 2 224 170 21 0 chr1 108011279 108011326 -174182338 + A-rich Low_complexity Low_complexity 5 52 0 249 254 0 0 chr1 108011576 108011635 -174182029 + (CA)n Simple_repeat Simple_repeat 2 60 0 1909 144 29 32 chr1 108012084 108012459 -174181205 - THE1C LTR MaLR -1 374 1 230 260 200 20 chr1 108012727 108012827 -174180837 + LTR33 LTR ERVL 54 171 -350 380 283 49 54 chr1 108012913 108012989 -174180675 + LTR33 LTR ERVL 337 412 -109 2207 147 28 17 chr1 108012989 108013349 -174180315 + THE1B LTR MaLR 1 364 0 11048 103 11 6 chr1 108013349 108013796 -174179868 + THE1B-int LTR MaLR 1 445 -1135 2014 110 27 23 chr1 108013796 108014096 -174179568 + AluSx SINE Alu 4 304 -8 11048 103 11 6 chr1 108014096 108015221 -174178443 + THE1B-int LTR MaLR 445 1580 0 2138 147 37 11 chr1 108015221 108015576 -174178088 + THE1B LTR MaLR 1 364 0 380 283 49 54 chr1 108015576 108015609 -174178055 + LTR33 LTR ERVL 410 442 -79 6187 150 62 9 chr1 108015609 108016777 -174176887 - Tigger3b DNA MER2_type 0 1231 1 380 283 49 54 chr1 108016777 108016848 -174176816 + LTR33 LTR ERVL 442 519 -2 6517 207 62 77 chr1 108017728 108019464 -174174200 + MER52A LTR ERV1 46 1755 0 2349 117 22 11 chr1 108019567 108019927 -174173737 - THE1B LTR MaLR 0 364 1 2006 230 85 20 chr1 108019927 108020515 -174173149 - L1ME1 LINE L1 -11 6435 5810 247 275 29 0 chr1 108020625 108020694 -174172970 + MLT1G1 LTR MaLR 154 224 -371 2386 269 85 18 chr1 108020934 108021278 -174172386 - L1ME1 LINE L1 -2497 3929 3610 1524 184 7 101 chr1 108021278 108021685 -174171979 + MLT1A2 LTR MaLR 2 370 -4 2386 269 85 18 chr1 108021685 108021793 -174171871 - L1ME1 LINE L1 -2816 3610 3511 183 100 0 0 chr1 108021793 108021823 -174171841 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2386 269 85 18 chr1 108021823 108022434 -174171230 - L1ME1 LINE L1 -2915 3511 2793 1853 169 61 3 chr1 108022482 108022842 -174170822 - L1MC1 LINE L1 -30 6303 5923 7582 219 134 15 chr1 108022860 108024797 -174168867 - L1ME1 LINE L1 -4226 2200 34 1096 281 45 38 chr1 108024798 108025552 -174168112 - L1MEc LINE L1 -3656 2559 1842 2110 135 3 3 chr1 108026336 108026648 -174167016 + AluSq SINE Alu 1 312 -1 410 231 108 31 chr1 108026712 108026842 -174166822 + MIR SINE MIR 90 229 -33 4993 171 32 51 chr1 108027075 108028249 -174165415 - L1MC2 LINE L1 -23 6321 5175 214 200 0 62 chr1 108028905 108028970 -174164694 + A-rich Low_complexity Low_complexity 2 62 0 799 238 72 27 chr1 108028999 108029204 -174164460 - MIR SINE MIR -28 234 17 336 302 74 62 chr1 108029204 108029608 -174164056 - MLT1I LTR MaLR 0 409 1 799 238 72 27 chr1 108029608 108029625 -174164039 - MIR SINE MIR -245 17 2 374 319 45 38 chr1 108029980 108030272 -174163392 + HAL1b LINE L1 402 695 -653 1495 174 44 17 chr1 108030456 108030749 -174162915 + AluSx SINE Alu 3 303 -9 25 51 0 0 chr1 108030799 108030838 -174162826 + AT_rich Low_complexity Low_complexity 1 39 0 403 336 49 89 chr1 108032633 108033106 -174160558 - L2 LINE L2 0 3272 2819 806 203 16 57 chr1 108033117 108033330 -174160334 - MSTB2 LTR MaLR 0 457 223 433 255 80 37 chr1 108033770 108033958 -174159706 - MER46C DNA MER2_type -12 326 131 259 342 19 75 chr1 108036686 108036847 -174156817 - MER5A DNA MER1_type 0 189 38 24 0 0 0 chr1 108037092 108037116 -174156548 + AT_rich Low_complexity Low_complexity 1 24 0 336 324 58 46 chr1 108038503 108038700 -174154964 - MIR SINE MIR -42 220 21 2200 71 3 3 chr1 108039118 108039401 -174154263 - AluY SINE Alu -28 283 1 1388 90 0 11 chr1 108039472 108039650 -174154014 + AluSp SINE Alu 103 278 -35 406 19 0 0 chr1 108039650 108039703 -174153961 + L1HS LINE L1 6103 6155 0 612 51 0 0 chr1 108039917 108039995 -174153669 - MADE1 DNA Mariner 0 80 3 431 274 105 86 chr1 108040200 108040573 -174153091 + L2 LINE L2 2934 3313 0 504 269 81 0 chr1 108041274 108041434 -174152230 - Zaphod DNA AcHobo 0 4031 3859 728 216 45 17 chr1 108041475 108041651 -174152013 - Zaphod DNA AcHobo -3431 600 420 249 325 12 12 chr1 108041653 108041736 -174151928 - Zaphod DNA AcHobo -3857 174 92 25 0 0 0 chr1 108041840 108041865 -174151799 + AT_rich Low_complexity Low_complexity 1 25 0 1313 175 11 15 chr1 108041865 108042139 -174151525 - L1MA9 LINE L1 -38 6274 6002 2316 88 0 0 chr1 108042198 108042492 -174151172 - AluY SINE Alu -17 294 1 220 322 0 35 chr1 108042533 108042620 -174151044 - MER5A DNA MER1_type -74 115 32 338 250 159 34 chr1 108043282 108043490 -174150174 - L1ME4a LINE L1 -264 5857 5624 369 0 0 0 chr1 108044400 108044441 -174149223 + (CA)n Simple_repeat Simple_repeat 1 41 0 910 185 0 0 chr1 108044443 108044589 -174149075 - FRAM SINE Alu -30 146 1 285 268 159 7 chr1 108044661 108044799 -174148865 + MIR SINE MIR 66 224 -38 21 0 0 0 chr1 108045251 108045272 -174148392 + AT_rich Low_complexity Low_complexity 1 21 0 209 292 0 0 chr1 108045773 108045838 -174147826 + A-rich Low_complexity Low_complexity 1 65 0 24 53 0 0 chr1 108046885 108046923 -174146741 + AT_rich Low_complexity Low_complexity 1 38 0 310 321 37 8 chr1 108047305 108047439 -174146225 + MER69 DNA AcHobo 1 138 -2388 347 358 115 65 chr1 108047957 108048436 -174145228 + L2 LINE L2 2767 3267 -5 1630 193 97 5 chr1 108048695 108049078 -174144586 + LTR52 LTR ERVL 4 421 0 186 167 0 0 chr1 108049489 108049525 -174144139 + T-rich Low_complexity Low_complexity 52 87 0 2111 135 3 0 chr1 108049527 108049838 -174143826 - AluSx SINE Alu 0 312 1 468 0 0 0 chr1 108050739 108050791 -174142873 + (TG)n Simple_repeat Simple_repeat 2 53 0 270 0 0 0 chr1 108051432 108051462 -174142202 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr1 108052425 108052446 -174141218 + AT_rich Low_complexity Low_complexity 1 21 0 4613 42 33 0 chr1 108052771 108053343 -174140321 + LTR10C LTR ERV1 1 591 0 261 293 49 49 chr1 108053762 108053885 -174139779 - L2 LINE L2 -1 3271 3149 618 250 133 15 chr1 108055637 108055833 -174137831 - MIR SINE MIR -41 221 3 442 320 72 69 chr1 108055908 108056242 -174137422 + L3 LINE CR1 1117 1451 -126 626 290 58 85 chr1 108056298 108056573 -174137091 - L2 LINE L2 -74 3239 2958 3792 94 0 4 chr1 108056573 108057086 -174136578 + MER9 LTR ERVK 1 511 0 626 290 58 85 chr1 108057086 108057387 -174136277 - L2 LINE L2 -355 2958 2670 299 307 29 36 chr1 108057419 108057556 -174136108 + L3 LINE CR1 1441 1576 -1 2340 82 0 35 chr1 108057856 108058174 -174135490 - AluY SINE Alu -4 307 1 6576 119 19 27 chr1 108058298 108059507 -174134157 - L1MA3 LINE L1 -2 7722 6525 6548 182 46 22 chr1 108059479 108061921 -174131743 - L1MA3 LINE L1 -2378 5187 2686 * 1675 190 64 0 chr1 108063147 108063473 -174130191 - MER7A DNA MER2_type 0 346 2 219 323 42 10 chr1 108064907 108065003 -174128661 - MIR SINE MIR -59 149 51 195 42 0 0 chr1 108066265 108066289 -174127375 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 27989 138 18 54 chr1 108066291 108072699 -174120965 - L1PA8 LINE L1 -13 6159 1 22 0 0 0 chr1 108073679 108073701 -174119963 + AT_rich Low_complexity Low_complexity 1 22 0 229 347 69 28 chr1 108075061 108075205 -174118459 + MIR3 SINE MIR 20 169 -39 2861 258 46 10 chr1 108075985 108077150 -174116514 - L1ME1 LINE L1 -5 6161 4954 231 284 14 27 chr1 108077184 108077258 -174116406 + CT-rich Low_complexity Low_complexity 3 75 0 1797 266 53 25 chr1 108077258 108078029 -174115635 - L1ME1 LINE L1 -1194 4952 4160 751 261 56 45 chr1 108078019 108078238 -174115426 - L1ME1 LINE L1 -2846 3300 3085 * 379 92 0 53 chr1 108078238 108078314 -174115350 - L1PA15 LINE L1 0 6165 6094 751 261 56 45 chr1 108078314 108078538 -174115126 - L1ME1 LINE L1 -3061 3085 2852 1243 248 114 22 chr1 108078546 108079046 -174114618 - L1ME1 LINE L1 -3353 2793 2248 717 61 35 0 chr1 108079734 108079849 -174113815 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 622 295 136 32 chr1 108079961 108080364 -174113300 - L2 LINE L2 -173 3140 2711 550 233 14 41 chr1 108080456 108080602 -174113062 - MER69 DNA AcHobo -2384 142 1 1017 274 36 51 chr1 108080603 108080994 -174112670 - L2 LINE L2 -597 2717 2333 310 250 0 15 chr1 108083610 108083678 -174109986 - L2 LINE L2 0 3272 3206 183 205 0 0 chr1 108083681 108083720 -174109944 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 301 286 214 0 chr1 108083956 108084068 -174109596 - L2 LINE L2 -217 3055 2920 686 141 91 25 chr1 108084138 108084248 -174109416 + FLAM_C SINE Alu 1 121 -191 222 37 0 0 chr1 108084248 108084275 -174109389 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2021 108 17 14 chr1 108085628 108085925 -174107739 - AluSx SINE Alu -14 298 1 338 241 51 0 chr1 108086112 108086191 -174107473 + MIR SINE MIR 168 250 -12 218 146 0 104 chr1 108086159 108086207 -174107457 + L2 LINE L2 3264 3306 -7 * 225 182 30 15 chr1 108086285 108086351 -174107313 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 282 130 0 143 chr1 108086375 108086452 -174107212 + MLT2B1 LTR ERVL 455 520 0 320 280 63 35 chr1 108087407 108087550 -174106114 + MIR SINE MIR 66 212 -50 264 291 0 58 chr1 108087969 108088055 -174105609 - L2 LINE L2 -14 3258 3178 22 0 0 0 chr1 108088131 108088153 -174105511 + AT_rich Low_complexity Low_complexity 1 22 0 374 323 37 98 chr1 108088230 108088435 -174105229 + L1MC4 LINE L1 6762 6944 -1098 1935 150 0 0 chr1 108088435 108088749 -174104915 + AluSx SINE Alu 1 314 0 374 323 37 98 chr1 108088749 108088868 -174104796 + L1MC4 LINE L1 6944 7069 -973 304 234 86 31 chr1 108088942 108089070 -174104594 - L2 LINE L2 -106 3207 3073 1112 286 213 16 chr1 108089256 108089833 -174103831 - L2 LINE L2 -628 2686 1996 2488 229 155 1 chr1 108091086 108091888 -174101776 - Charlie1a DNA MER1_type -1 1454 530 455 276 24 8 chr1 108091886 108092013 -174101651 - Charlie1a DNA MER1_type -1326 129 1 * 184 273 26 91 chr1 108092052 108092129 -174101535 - L2 LINE L2 -200 3072 3001 256 388 99 7 chr1 108092223 108092375 -174101289 - L2 LINE L2 -517 2797 2632 249 33 0 0 chr1 108092474 108092504 -174101160 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 248 261 104 26 chr1 108092628 108092743 -174100921 - L2 LINE L2 -1007 2307 2184 208 350 75 0 chr1 108093628 108093708 -174099956 - L2 LINE L2 -35 3278 3193 2617 99 5 11 chr1 108094361 108094736 -174098928 - THE1C LTR MaLR 0 375 3 186 133 0 0 chr1 108095177 108095207 -174098457 + (T)n Simple_repeat Simple_repeat 1 30 0 2353 81 0 3 chr1 108095367 108095662 -174098002 - AluY SINE Alu -17 294 1 4400 225 88 6 chr1 108095735 108096943 -174096721 + L1MC/D LINE L1 2788 4094 -2052 881 211 50 73 chr1 108096945 108097322 -174096342 + MSTC LTR MaLR 1 421 -7 4233 232 31 12 chr1 108097322 108098221 -174095443 + L1MC/D LINE L1 4085 5024 -1320 204 97 0 0 chr1 108098221 108098252 -174095412 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4233 232 31 12 chr1 108098252 108098871 -174094793 + L1MC/D LINE L1 5024 5629 -715 675 241 65 0 chr1 108100428 108100598 -174093066 + MIR SINE MIR 53 233 -29 27 29 0 0 chr1 108100608 108100642 -174093022 + AT_rich Low_complexity Low_complexity 1 34 0 862 278 37 37 chr1 108100922 108101249 -174092415 + MER69 DNA AcHobo 72 398 -828 403 188 31 0 chr1 108101273 108101369 -174092295 - L1MA8 LINE L1 -2 6289 6191 601 178 16 0 chr1 108101387 108101516 -174092148 + MER69 DNA AcHobo 1962 2092 -434 21 36 0 0 chr1 108101516 108101544 -174092120 + AT_rich Low_complexity Low_complexity 1 28 0 2027 194 74 176 chr1 108101649 108101992 -174091672 - L1MC3 LINE L1 -56 6114 5738 287 225 0 88 chr1 108101992 108102072 -174091592 - MLT1F1 LTR MaLR -449 118 46 2027 194 74 176 chr1 108102072 108102919 -174090745 - L1MC3 LINE L1 -432 5738 6387 1385 210 43 4 chr1 108102919 108103195 -174090469 - AluJb SINE Alu -15 287 1 2027 194 74 176 chr1 108103195 108103497 -174090167 - L1MC3 LINE L1 218 6388 6057 22 35 0 0 chr1 108104128 108104157 -174089507 + AT_rich Low_complexity Low_complexity 1 29 0 405 340 0 7 chr1 108104968 108105118 -174088546 - MER117 DNA MER1_type -1 196 48 226 318 47 12 chr1 108106788 108106873 -174086791 + MIR SINE MIR 56 143 -65 189 0 0 0 chr1 108107163 108107184 -174086480 + (TG)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr1 108107231 108107266 -174086398 + AT_rich Low_complexity Low_complexity 1 35 0 311 307 62 73 chr1 108108457 108108636 -174085028 + MIR SINE MIR 15 191 -71 326 331 49 25 chr1 108108862 108109025 -174084639 + L2 LINE L2 1814 1980 -1334 2060 197 22 19 chr1 108109227 108109644 -174084020 - MER47B DNA MER2_type 0 418 1 931 182 73 0 chr1 108110081 108110273 -174083391 - MER2 DNA MER2_type -139 206 1 451 303 87 25 chr1 108110296 108110537 -174083127 - MIR SINE MIR -1 261 6 1849 163 48 3 chr1 108110676 108111031 -174082633 - L1PB4 LINE L1 -2 6154 5784 342 214 48 24 chr1 108111721 108111805 -174081859 - L1MC4 LINE L1 -1343 6699 6614 279 342 74 60 chr1 108112620 108113053 -174080611 + L2 LINE L2 2827 3265 -7 34 42 0 0 chr1 108113847 108113895 -174079769 + AT_rich Low_complexity Low_complexity 1 48 0 547 174 74 67 chr1 108114672 108114821 -174078843 - MER20 DNA MER1_type 0 219 70 302 298 48 0 chr1 108114823 108114907 -174078757 + L1MC4 LINE L1 6614 6701 -1341 249 303 0 0 chr1 108114907 108115025 -174078639 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr1 108115026 108115047 -174078617 + (TG)n Simple_repeat Simple_repeat 2 22 0 308 186 0 100 chr1 108115055 108115125 -174078539 - MER20 DNA MER1_type -156 63 1 226 236 18 0 chr1 108115732 108115787 -174077877 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 1866 182 7 82 chr1 108116124 108116552 -174077112 - MSTD LTR MaLR 0 396 1 308 236 0 0 chr1 108116880 108116935 -174076729 - L2 LINE L2 -32 3240 3186 559 329 61 4 chr1 108120910 108121141 -174072523 + MLT1L LTR MaLR 330 573 -42 2051 119 14 14 chr1 108121173 108121466 -174072198 + AluSx SINE Alu 3 295 -17 37 23 0 0 chr1 108121955 108121999 -174071665 + AT_rich Low_complexity Low_complexity 1 44 0 415 273 77 95 chr1 108122749 108123137 -174070527 + HAL1 LINE L1 881 1261 -1246 2077 141 23 0 chr1 108123436 108123555 -174070109 + AluSx SINE Alu 1 116 -196 198 0 0 0 chr1 108123555 108123577 -174070087 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2077 141 23 0 chr1 108123577 108123762 -174069902 + AluSx SINE Alu 116 312 0 366 264 138 22 chr1 108124501 108124758 -174068906 + L1MEc LINE L1 802 1040 -5178 1473 225 59 68 chr1 108124758 108125343 -174068321 + L1MDa LINE L1 21 1039 -5501 3073 177 34 2 chr1 108125343 108125875 -174067789 - MER52A LTR ERV1 0 1755 1207 * 4441 177 96 20 chr1 108125857 108126794 -174066870 - MER52A LTR ERV1 -676 1079 1 4327 199 75 56 chr1 108126795 108128185 -174065479 + L1MDa LINE L1 1037 2453 -4087 1143 286 105 22 chr1 108128197 108129046 -174064618 + L1M4 LINE L1 3530 4484 -1662 257 203 14 0 chr1 108129080 108129149 -174064515 + L1M4 LINE L1 4618 4687 -1459 24 32 0 0 chr1 108129826 108129857 -174063807 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr1 108129876 108129918 -174063746 + AT_rich Low_complexity Low_complexity 1 42 0 1226 231 96 89 chr1 108130030 108130909 -174062755 - HAL1b LINE L1 -173 1175 291 21 0 0 0 chr1 108132078 108132099 -174061565 + AT_rich Low_complexity Low_complexity 1 21 0 247 305 171 0 chr1 108133116 108133221 -174060443 - L2 LINE L2 -1 3271 3149 345 56 0 37 chr1 108136576 108136630 -174057034 + L1PA8 LINE L1 6115 6166 -6 8080 138 8 13 chr1 108136681 108137981 -174055683 + HSMAR2 DNA Mariner 8 1301 -1 292 232 24 0 chr1 108137981 108138063 -174055601 + (TA)n Simple_repeat Simple_repeat 2 85 0 992 161 0 0 chr1 108138063 108138225 -174055439 + HSMAR2 DNA Mariner 649 810 -492 185 306 0 16 chr1 108139733 108139795 -174053869 - L3b LINE CR1 -167 1416 1356 22 35 0 0 chr1 108139795 108139824 -174053840 + AT_rich Low_complexity Low_complexity 1 29 0 2403 100 0 0 chr1 108139827 108140136 -174053528 + AluSx SINE Alu 1 309 -3 314 352 31 20 chr1 108140211 108140407 -174053257 - L3 LINE CR1 -314 1263 1066 206 32 32 0 chr1 108140448 108140479 -174053185 + (TA)n Simple_repeat Simple_repeat 2 33 0 1920 150 0 14 chr1 108140479 108140772 -174052892 - AluJb SINE Alu -22 290 2 287 320 41 14 chr1 108141066 108141213 -174052451 - MIR SINE MIR -46 216 66 334 331 52 7 chr1 108141309 108141463 -174052201 + MIR SINE MIR 53 213 -49 466 277 90 11 chr1 108141858 108142035 -174051629 + Charlie2a DNA MER1_type 200 390 -2392 400 281 133 5 chr1 108142083 108142145 -174051519 + Charlie2a DNA MER1_type 734 787 -2075 2027 224 75 45 chr1 108142145 108142762 -174050902 + MER92B LTR ERV1 2 636 0 400 281 133 5 chr1 108142762 108142895 -174050769 + Charlie2a DNA MER1_type 787 954 -1908 516 200 9 0 chr1 108142921 108143026 -174050638 + Charlie2a DNA MER1_type 2753 2858 -4 2173 105 0 0 chr1 108143339 108143616 -174050048 + AluSc SINE Alu 1 277 -32 267 0 70 0 chr1 108143618 108143661 -174050003 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 270 307 144 51 chr1 108144192 108144602 -174049062 - LTR33 LTR ERVL -55 466 19 39 22 0 0 chr1 108144788 108144834 -174048830 + AT_rich Low_complexity Low_complexity 1 46 0 23 68 0 0 chr1 108145160 108145204 -174048460 + AT_rich Low_complexity Low_complexity 1 44 0 599 325 47 5 chr1 108145309 108145521 -174048143 - MIR SINE MIR -2 260 40 966 246 5 19 chr1 108145633 108145844 -174047820 + MER58A DNA MER1_type 17 224 0 2930 164 47 2 chr1 108145990 108146483 -174047181 - MLT2B2 LTR ERVL 0 515 1 186 43 0 0 chr1 108146614 108146637 -174047027 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 371 324 93 17 chr1 108148298 108148623 -174045041 + MLT1J1 LTR MaLR 17 331 -115 44206 40 1 1 chr1 108148910 108155064 -174038600 - L1PA3 LINE L1 -3 6152 1 473 238 9 9 chr1 108155536 108155641 -174038023 + L2 LINE L2 3168 3272 0 1691 218 11 16 chr1 108155898 108156265 -174037399 + MLT1A1 LTR MaLR 1 365 0 180 320 27 0 chr1 108157222 108157297 -174036367 + MIR SINE MIR 185 261 -1 180 293 53 27 chr1 108158457 108158532 -174035132 - L3 LINE CR1 -130 1447 1371 26 19 0 58 chr1 108159236 108159288 -174034376 + AT_rich Low_complexity Low_complexity 1 49 0 271 200 20 0 chr1 108159706 108159756 -174033908 + MER5A DNA MER1_type 2 52 -137 1530 156 103 14 chr1 108159938 108160220 -174033444 + AluJo SINE Alu 1 307 -5 190 285 95 95 chr1 108160746 108160861 -174032803 + L2 LINE L2 3136 3253 -19 7746 18 2 4 chr1 108160861 108162462 -174031202 + L1PA3 LINE L1 4557 6155 0 190 285 95 95 chr1 108162462 108162483 -174031181 + L2 LINE L2 3252 3272 0 1847 192 29 5 chr1 108162752 108163168 -174030496 - L1PB4 LINE L1 -1 6857 6432 1864 184 47 24 chr1 108163168 108163707 -174029957 + MLT2A2 LTR ERVL 2 546 -8 13758 200 25 25 chr1 108163710 108168215 -174025449 - L1PB4 LINE L1 -420 6438 1917 605 349 10 5 chr1 108168224 108168419 -174025245 - L1PB4 LINE L1 -5965 884 689 1674 290 15 17 chr1 108168723 108169202 -174024462 - L1PB4 LINE L1 -6362 487 10 244 379 11 11 chr1 108169363 108169450 -174024214 + L2 LINE L2 3141 3227 -45 750 313 65 0 chr1 108170066 108170312 -174023352 + MIR SINE MIR 1 262 0 283 325 122 16 chr1 108170841 108170964 -174022700 + MIR SINE MIR 35 170 -92 208 151 19 19 chr1 108171219 108171272 -174022392 + GA-rich Low_complexity Low_complexity 2 54 0 181 313 12 25 chr1 108174102 108174182 -174019482 + MIR SINE MIR 66 144 -118 1112 199 42 0 chr1 108174358 108174594 -174019070 + MIR SINE MIR 16 261 -1 1932 140 36 0 chr1 108174744 108175023 -174018641 - AluSx SINE Alu -23 289 1 21 82 0 0 chr1 108175628 108175677 -174017987 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr1 108175827 108175848 -174017816 + AT_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr1 108176106 108176136 -174017528 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 707 270 89 47 chr1 108176818 108176904 -174016760 + L1ME LINE L1 2 83 -5987 180 0 0 0 chr1 108176904 108176924 -174016740 + (CAA)n Simple_repeat Simple_repeat 2 21 0 707 270 89 47 chr1 108176924 108177285 -174016379 + L1ME LINE L1 83 468 -5602 230 162 0 0 chr1 108177297 108177334 -174016330 - THE1C LTR MaLR 0 428 392 1021 67 0 7 chr1 108177334 108177641 -174016023 + L1PA8 LINE L1 6037 6342 0 248 51 0 26 chr1 108177641 108177680 -174015984 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 1861 139 41 24 chr1 108177683 108178024 -174015640 - THE1C LTR MaLR -27 401 1 321 281 56 50 chr1 108179368 108179528 -174014136 - MIR SINE MIR -11 251 91 624 288 50 108 chr1 108179528 108180067 -174013597 + LTR67 LTR ERVL 19 526 -31 1847 168 69 0 chr1 108180165 108180529 -174013135 + MLT1B LTR MaLR 1 389 -1 2323 46 46 0 chr1 108181192 108181477 -174012187 + AluY SINE Alu 13 310 -1 352 285 20 53 chr1 108181527 108181678 -174011986 - L2 LINE L2 0 3313 3168 227 322 11 0 chr1 108182516 108182606 -174011058 - L1ME4a LINE L1 -84 6037 5947 332 309 28 6 chr1 108183187 108183365 -174010299 + L1ME3A LINE L1 5767 5948 -222 24 0 0 0 chr1 108183585 108183609 -174010055 + AT_rich Low_complexity Low_complexity 1 24 0 308 237 245 7 chr1 108183619 108183758 -174009906 + L3 LINE CR1 1239 1410 -167 234 361 66 0 chr1 108184114 108184236 -174009428 + L3 LINE CR1 1414 1543 -34 265 250 0 0 chr1 108184249 108184305 -174009359 - L2 LINE L2 0 3272 3217 348 274 28 19 chr1 108184510 108184616 -174009048 - MIR3 SINE MIR -3 205 99 214 380 0 13 chr1 108185286 108185365 -174008299 + L2 LINE L2 2560 2637 -677 1574 327 119 41 chr1 108185492 108187470 -174006194 + L2 LINE L2 1237 3272 0 795 288 48 13 chr1 108187947 108188256 -174005408 - L1MC4a LINE L1 -1768 6040 5721 23 0 0 0 chr1 108188318 108188341 -174005323 + AT_rich Low_complexity Low_complexity 1 23 0 533 268 91 5 chr1 108188351 108188549 -174005115 - L1MC4a LINE L1 -2277 5531 5317 448 275 42 21 chr1 108188551 108188740 -174004924 - L1MC4a LINE L1 -1463 4683 4491 21 36 0 0 chr1 108189457 108189485 -174004179 + AT_rich Low_complexity Low_complexity 1 28 0 295 212 88 44 chr1 108189577 108189690 -174003974 - HAL1b LINE L1 -1025 323 206 1361 272 105 16 chr1 108190967 108191394 -174002270 - MER115 DNA AcHobo 0 693 229 185 73 0 73 chr1 108192580 108192621 -174001043 + (T)n Simple_repeat Simple_repeat 1 38 0 210 167 0 0 chr1 108195144 108195180 -173998484 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr1 108195827 108195849 -173997815 + AT_rich Low_complexity Low_complexity 1 22 0 194 140 0 100 chr1 108198955 108199005 -173994659 + MIR SINE MIR 216 260 -2 1741 172 30 0 chr1 108199270 108199566 -173994098 - AluJb SINE Alu -7 305 1 274 336 43 64 chr1 108199946 108200086 -173993578 + MIR3 SINE MIR 39 175 -33 2216 123 22 27 chr1 108200170 108200536 -173993128 + THE1B LTR MaLR 1 364 0 608 350 17 0 chr1 108200794 108201028 -173992636 - MIR SINE MIR -11 251 14 204 159 0 23 chr1 108202648 108202692 -173990972 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 908 209 0 6 chr1 108203593 108203756 -173989908 - FRAM SINE Alu -3 163 2 1877 133 25 7 chr1 108204012 108204290 -173989374 + AluJb SINE Alu 5 287 -25 385 349 23 28 chr1 108204983 108205198 -173988466 - L2 LINE L2 -538 2776 2563 894 228 82 26 chr1 108205202 108205434 -173988230 + MIR SINE MIR 15 259 -3 1982 130 14 7 chr1 108206270 108206562 -173987102 - AluSx SINE Alu -14 298 5 461 304 34 20 chr1 108206869 108207017 -173986647 - L2 LINE L2 -19 3294 3145 298 262 95 0 chr1 108207353 108207437 -173986227 - MLT1J LTR MaLR -415 96 5 397 331 184 11 chr1 108207526 108207879 -173985785 - L1ME LINE L1 -351 5753 5340 1527 171 32 0 chr1 108208656 108208907 -173984757 + AluJb SINE Alu 1 259 -53 603 280 90 41 chr1 108209143 108209195 -173984469 + L2 LINE L2 3028 3076 -237 2470 30 40 0 chr1 108209195 108209493 -173984171 + AluY SINE Alu 1 310 -1 603 280 90 41 chr1 108209493 108209708 -173983956 + L2 LINE L2 3076 3308 -5 575 319 75 7 chr1 108209714 108209993 -173983671 - MLT1I LTR MaLR -49 360 63 201 434 12 0 chr1 108210960 108211043 -173982621 - L2 LINE L2 -87 3185 3102 4085 118 8 61 chr1 108211093 108211478 -173982186 + L1MC1 LINE L1 5353 5682 -651 1801 163 0 0 chr1 108211478 108211760 -173981904 - AluSx SINE Alu -30 282 1 4085 118 8 61 chr1 108211760 108212111 -173981553 + L1MC1 LINE L1 5682 6050 -283 1597 143 18 11 chr1 108212161 108212440 -173981224 + L1MC1 LINE L1 6053 6333 0 2443 126 6 6 chr1 108212757 108213121 -173980543 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr1 108213244 108213276 -173980388 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr1 108213450 108213477 -173980187 + AT_rich Low_complexity Low_complexity 1 27 0 978 282 94 47 chr1 108215958 108217137 -173976527 - L1ME LINE L1 -984 5145 3911 474 205 0 0 chr1 108217240 108217323 -173976341 - FRAM/FAM SINE Alu -94 82 1 246 284 88 77 chr1 108217323 108218201 -173975463 - L1ME LINE L1 -3012 3117 2231 482 167 33 11 chr1 108219116 108219206 -173974458 + MLT1D LTR MaLR 1 92 -413 1648 294 66 55 chr1 108219209 108220219 -173973445 - L1ME LINE L1 -5097 1022 2 434 345 82 0 chr1 108220837 108221031 -173972633 - MIR SINE MIR -16 246 37 1116 230 58 140 chr1 108221153 108221739 -173971925 + MER77 LTR ERV1 41 578 -27 244 261 141 0 chr1 108222051 108222143 -173971521 - MER104 DNA Tc2 -70 110 6 13780 127 20 60 chr1 108222202 108223110 -173970554 + Tigger1 DNA MER2_type 1 943 -1475 1944 125 3 17 chr1 108223110 108223428 -173970236 + AluSx SINE Alu 1 314 0 13780 127 20 60 chr1 108223428 108225034 -173968630 + Tigger1 DNA MER2_type 943 2417 -1 239 376 8 8 chr1 108225224 108225341 -173968323 - MIR SINE MIR -120 142 26 737 200 0 21 chr1 108225389 108225534 -173968130 + FLAM_C SINE Alu 1 142 -1 187 356 198 12 chr1 108225677 108226006 -173967658 - L2 LINE L2 -816 2498 2109 1147 233 107 68 chr1 108226027 108226512 -173967152 - MLT1H LTR MaLR -45 504 1 352 222 0 0 chr1 108226905 108226977 -173966687 - LTR16B LTR ERVL 0 464 393 192 97 0 0 chr1 108229117 108229148 -173964516 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2535 57 0 0 chr1 108229422 108229721 -173963943 - AluY SINE Alu -12 299 1 203 349 45 0 chr1 108229845 108229911 -173963753 + MIR SINE MIR 32 100 -162 1770 162 3 3 chr1 108229936 108230220 -173963444 + AluJb SINE Alu 1 284 -28 212 57 0 29 chr1 108230220 108230255 -173963409 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 320 288 34 51 chr1 108230273 108230391 -173963273 - L2 LINE L2 -5 3308 3193 1767 83 0 12 chr1 108230830 108231072 -173962592 - AluY SINE Alu 0 311 73 1832 136 0 14 chr1 108231083 108231377 -173962287 - L1PA16 LINE L1 -106 6060 5771 2392 81 13 0 chr1 108231377 108231686 -173961978 - AluSq SINE Alu 0 313 1 202 239 0 0 chr1 108232890 108232936 -173960728 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 844 153 15 0 chr1 108233733 108233864 -173959800 + FLAM_C SINE Alu 1 133 0 2377 92 0 0 chr1 108233926 108234231 -173959433 + AluSg SINE Alu 1 305 -5 237 299 115 45 chr1 108234809 108234966 -173958698 - MIR3 SINE MIR -1 207 40 994 101 0 0 chr1 108235423 108235562 -173958102 - AluY SINE Alu 0 311 173 1727 173 36 7 chr1 108235912 108236082 -173957582 - AluJo SINE Alu -2 310 126 198 0 0 0 chr1 108236082 108236104 -173957560 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1727 173 36 7 chr1 108236104 108236234 -173957430 - AluJo SINE Alu -186 126 1 1295 274 224 9 chr1 108236283 108237045 -173956619 - L2 LINE L2 0 3313 2375 518 306 123 50 chr1 108237096 108237455 -173956209 - HAL1 LINE L1 -636 1871 1487 2233 45 368 164 chr1 108237457 108237947 -173955717 + LTR12 LTR ERV1 1 634 -80 11256 23 1 0 chr1 108237947 108240039 -173953625 - L1PA3 LINE L1 0 6155 4061 2233 45 368 164 chr1 108240039 108240141 -173953523 + LTR12 LTR ERV1 634 714 0 985 299 106 37 chr1 108240148 108240827 -173952837 - HAL1 LINE L1 -1027 1480 755 333 0 0 0 chr1 108243755 108243792 -173949872 + (TG)n Simple_repeat Simple_repeat 2 38 0 373 161 0 0 chr1 108243944 108244000 -173949664 - LTR29 LTR ERV1 0 622 567 * 1557 157 203 16 chr1 108243990 108244365 -173949299 - LTR29 LTR ERV1 -177 445 1 237 108 0 0 chr1 108244468 108244505 -173949159 + (TG)n Simple_repeat Simple_repeat 2 38 0 1480 225 4 4 chr1 108244508 108244788 -173948876 - AluJb SINE Alu -31 281 2 5331 70 133 0 chr1 108245004 108245733 -173947931 + LTR12 LTR ERV1 1 826 0 20883 103 4 6 chr1 108245757 108248677 -173944987 + HERV9 LTR ERV1 58 2972 -5427 1294 134 5 22 chr1 108248676 108248899 -173944765 + HERV9 LTR ERV1 4756 4974 -3425 * 2250 178 111 74 chr1 108248867 108249705 -173943959 + Harlequin LTR ERV1 841 1709 -5187 * 4581 86 29 0 chr1 108249704 108250329 -173943335 + Harlequin LTR ERV1 7757 8399 0 226 269 0 0 chr1 108250329 108250381 -173943283 + LTR30 LTR ERV1 1 52 -670 1410 92 40 134 chr1 108250385 108250714 -173942950 + LTR12 LTR ERV1 57 2025 -413 284 189 0 0 chr1 108250714 108250767 -173942897 + LTR30 LTR ERV1 544 596 -126 15062 111 10 21 chr1 108250768 108253117 -173940547 - MER61C-int LTR ERV1 -912 4305 1983 4111 144 92 112 chr1 108253107 108254366 -173939298 - MER61C-int LTR ERV1 -3577 1640 407 * 1274 172 3 78 chr1 108254378 108254674 -173938990 - MER61C-int LTR ERV1 -4763 454 181 736 204 13 33 chr1 108254773 108254925 -173938739 - MER61C-int LTR ERV1 -5065 152 4 1216 148 39 39 chr1 108254927 108255156 -173938508 - MER61C LTR ERV1 0 434 206 * 1558 141 94 7 chr1 108255152 108255449 -173938215 - LTR23 LTR ERV1 -114 323 1 1391 163 74 115 chr1 108257084 108257519 -173936145 - MER96B DNA MER1_type? 0 417 1 3564 186 61 46 chr1 108257612 108258924 -173934740 + L1MB8 LINE L1 4834 6166 -12 195 42 0 0 chr1 108259158 108259182 -173934482 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 443 181 0 0 chr1 108259182 108259276 -173934388 - L1MA8 LINE L1 -10 6281 6188 987 113 20 0 chr1 108259276 108259427 -173934237 + L1MA7 LINE L1 5741 5894 -397 23 0 0 0 chr1 108259565 108259588 -173934076 + AT_rich Low_complexity Low_complexity 1 23 0 228 35 0 0 chr1 108259807 108259836 -173933828 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 451 303 155 40 chr1 108260056 108260436 -173933228 + L3 LINE CR1 1154 1577 0 195 69 0 0 chr1 108260592 108260621 -173933043 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 246 335 47 21 chr1 108262827 108263063 -173930601 - HAL1 LINE L1 -7 2500 2259 750 163 16 0 chr1 108263136 108263259 -173930405 + FLAM_C SINE Alu 1 125 -18 30 0 0 0 chr1 108263259 108263289 -173930375 + AT_rich Low_complexity Low_complexity 1 30 0 244 296 9 37 chr1 108263588 108263696 -173929968 + MLT1K LTR MaLR 484 588 0 2391 75 0 0 chr1 108263954 108264246 -173929418 - AluSq SINE Alu -16 297 6 346 265 20 31 chr1 108264462 108264560 -173929104 - MLT1K LTR MaLR -229 359 263 1055 246 103 47 chr1 108264570 108265106 -173928558 - L1MDa LINE L1 -4697 1843 1278 288 298 76 23 chr1 108265108 108265239 -173928425 + MIR SINE MIR 61 198 -64 508 200 53 0 chr1 108265292 108265421 -173928243 - AluJb SINE Alu 0 328 195 768 156 39 0 chr1 108265601 108265729 -173927935 - AluSg/x SINE Alu -4 308 176 181 331 50 25 chr1 108266142 108266263 -173927401 + L2 LINE L2 3190 3313 0 1463 245 109 29 chr1 108266412 108266932 -173926732 - MLT1F1 LTR MaLR -1 566 1 274 202 137 32 chr1 108266957 108267081 -173926583 - L1ME4a LINE L1 -1 6120 5984 1700 167 3 55 chr1 108267280 108267591 -173926073 - AluJo SINE Alu -17 295 1 198 269 154 13 chr1 108267968 108268046 -173925618 - MIR SINE MIR -96 166 78 609 252 0 0 chr1 108268553 108268668 -173924996 + FLAM_A SINE Alu 2 116 -17 1576 234 103 42 chr1 108268918 108269469 -173924195 - L1MD2 LINE L1 -2 6357 5773 25 0 0 0 chr1 108270278 108270303 -173923361 + AT_rich Low_complexity Low_complexity 1 25 0 7677 22 1 0 chr1 108270391 108271687 -173921977 + L1PA3 LINE L1 4859 6155 0 538 269 180 17 chr1 108271734 108272250 -173921414 + L1ME4a LINE L1 5271 5882 -239 208 234 32 64 chr1 108273889 108273983 -173919681 - L2 LINE L2 -129 3184 3094 338 211 0 11 chr1 108274601 108274696 -173918968 + GA-rich Low_complexity Low_complexity 3 96 0 317 325 0 16 chr1 108274700 108274823 -173918841 + A-rich Low_complexity Low_complexity 5 125 0 1168 184 87 0 chr1 108278384 108278591 -173915073 - AluJb SINE Alu -12 300 76 369 0 0 0 chr1 108279659 108279700 -173913964 + (TG)n Simple_repeat Simple_repeat 2 42 0 755 222 0 45 chr1 108279700 108279876 -173913788 - AluJb SINE Alu -31 281 114 398 20 20 0 chr1 108280025 108280076 -173913588 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 510 149 0 0 chr1 108280287 108280374 -173913290 + (TG)n Simple_repeat Simple_repeat 2 88 0 324 0 0 0 chr1 108280374 108280410 -173913254 + (TA)n Simple_repeat Simple_repeat 2 37 0 1932 155 0 10 chr1 108280503 108280807 -173912857 + AluJb SINE Alu 1 301 -11 1716 173 0 24 chr1 108283117 108283406 -173910258 - AluJo SINE Alu -26 286 5 773 285 29 21 chr1 108283858 108284100 -173909564 + MIR SINE MIR 15 258 -4 234 309 116 44 chr1 108284178 108284359 -173909305 + L2 LINE L2 3120 3313 0 209 337 120 23 chr1 108284483 108284658 -173909006 - L3b LINE CR1 -141 1442 1251 201 39 0 0 chr1 108285975 108286001 -173907663 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2483 300 64 43 chr1 108287199 108288826 -173904838 + L1ME LINE L1 10 1593 -4622 2203 149 65 7 chr1 108288834 108289237 -173904427 + MSTA LTR MaLR 1 426 -2 8723 171 41 28 chr1 108289243 108290870 -173902794 + MSTA-int LTR MaLR 5 1651 0 2304 143 59 7 chr1 108290870 108291275 -173902389 + MSTA LTR MaLR 1 426 -2 2054 249 41 44 chr1 108291288 108292576 -173901088 + L1ME LINE L1 1677 2936 -3279 444 306 168 40 chr1 108292584 108292982 -173900682 + L1ME LINE L1 4180 4628 -1587 430 192 34 20 chr1 108292999 108293145 -173900519 + GA-rich Low_complexity Low_complexity 3 150 0 571 357 79 5 chr1 108293146 108293538 -173900126 + L1ME LINE L1 4652 5072 -1143 3625 168 84 27 chr1 108293719 108294474 -173899190 + L1MC3 LINE L1 6918 7725 -60 2011 183 19 6 chr1 108294474 108294834 -173898830 - MLT1A1 LTR MaLR 0 365 1 3625 168 84 27 chr1 108294834 108294898 -173898766 + L1MC3 LINE L1 7725 7784 -1 270 282 21 25 chr1 108294893 108295188 -173898476 + L1ME LINE L1 5260 5553 -756 * 1493 159 189 32 chr1 108295432 108295802 -173897862 + MSTA LTR MaLR 1 428 0 1565 170 103 0 chr1 108295878 108296160 -173897504 - AluJb SINE Alu -1 311 1 2420 59 7 16 chr1 108296316 108296623 -173897041 + AluY SINE Alu 1 304 -7 253 264 55 0 chr1 108296623 108296714 -173896950 + Charlie2b DNA MER1_type 560 655 -2127 857 166 44 0 chr1 108296816 108296997 -173896667 + Charlie2a DNA MER1_type 1478 1666 -1196 277 265 51 0 chr1 108297002 108297100 -173896564 + Charlie2a DNA MER1_type 2716 2818 -44 270 248 1 10 chr1 108297101 108297207 -173896457 + L1ME LINE L1 5807 5910 -329 900 285 155 44 chr1 108297269 108297791 -173895873 - L2 LINE L2 -16 3297 2738 1321 269 82 27 chr1 108298112 108299226 -173894438 + L1ME3A LINE L1 3573 4624 -1546 2138 90 29 0 chr1 108299226 108299530 -173894134 + AluY SINE Alu 1 312 0 1321 269 82 27 chr1 108299530 108300801 -173892863 + L1ME3A LINE L1 4624 6158 -12 21 100 0 0 chr1 108300846 108300916 -173892748 + AT_rich Low_complexity Low_complexity 1 70 0 1888 159 33 49 chr1 108301077 108301468 -173892196 - MLT1B LTR MaLR 0 390 6 1906 152 50 17 chr1 108302645 108303007 -173890657 + THE1C LTR MaLR 2 375 0 182 211 84 70 chr1 108303057 108303128 -173890536 + L2 LINE L2 3011 3082 -190 258 210 49 37 chr1 108303203 108303284 -173890380 + L2 LINE L2 3195 3276 -37 21 0 0 0 chr1 108304907 108304928 -173888736 + AT_rich Low_complexity Low_complexity 1 21 0 191 229 0 0 chr1 108309655 108309690 -173883974 + MIR3 SINE MIR 122 156 -52 1119 168 39 0 chr1 108309777 108309980 -173883684 - AluJo SINE Alu -15 297 87 333 0 0 0 chr1 108310188 108310225 -173883439 + (CA)n Simple_repeat Simple_repeat 2 38 0 2093 115 7 7 chr1 108311896 108312184 -173881480 - AluSx SINE Alu -20 292 5 643 189 37 52 chr1 108312262 108312453 -173881211 - MER53 DNA DNA -1 188 1 225 352 55 0 chr1 108313106 108313197 -173880467 - L2 LINE L2 -53 3219 3124 181 269 0 19 chr1 108313526 108313578 -173880086 - L2 LINE L2 -64 3208 3158 626 288 22 5 chr1 108316271 108316455 -173877209 + MIR3 SINE MIR 16 202 -6 800 215 15 31 chr1 108316756 108316951 -173876713 + MER20 DNA MER1_type 24 215 -4 2339 101 0 0 chr1 108319302 108319600 -173874064 + AluY SINE Alu 1 298 -13 3768 135 43 129 chr1 108320703 108321602 -173872062 - LTR12 LTR ERV1 0 826 5 2741 154 16 29 chr1 108321616 108322228 -173871436 - pTR5 LTR ERV1 -1092 1346 743 1279 267 112 57 chr1 108322744 108323225 -173870439 + HAL1 LINE L1 33 486 -2021 936 173 12 0 chr1 108323225 108323387 -173870277 + U1 snRNA snRNA 2 165 0 1279 267 112 57 chr1 108323387 108324057 -173869607 + HAL1 LINE L1 486 1247 -1260 30 0 0 0 chr1 108324082 108324112 -173869552 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 108324333 108324361 -173869303 + AT_rich Low_complexity Low_complexity 1 28 0 2022 244 34 28 chr1 108324422 108325071 -173868593 - L1ME1 LINE L1 -44 6122 5470 985 263 101 35 chr1 108325414 108325900 -173867764 + LTR33 LTR ERVL 4 521 0 336 242 85 36 chr1 108325912 108326077 -173867587 + MLT1L LTR MaLR 383 555 -60 195 265 88 49 chr1 108326737 108326839 -173866825 - MIR SINE MIR 0 262 157 2115 152 28 3 chr1 108328110 108328465 -173865199 - THE1B LTR MaLR 0 364 1 475 351 50 12 chr1 108328467 108328709 -173864955 + MIR SINE MIR 12 262 0 1772 212 37 8 chr1 108329149 108329531 -173864133 + MLT1F1 LTR MaLR 128 520 -47 26 30 0 0 chr1 108329572 108329605 -173864059 + AT_rich Low_complexity Low_complexity 1 33 0 2372 71 0 7 chr1 108329934 108330230 -173863434 + AluY SINE Alu 1 294 -17 185 353 24 12 chr1 108330605 108330690 -173862974 - MIR SINE MIR -80 128 43 291 348 103 19 chr1 108331450 108331605 -173862059 - MIR SINE MIR -74 188 21 298 372 70 6 chr1 108334305 108334477 -173859187 - MER91A DNA MER1_type 0 196 14 226 189 0 0 chr1 108334488 108334525 -173859139 + MIR SINE MIR 197 233 -29 279 54 0 0 chr1 108334543 108334580 -173859084 + (CAT)n Simple_repeat Simple_repeat 2 38 0 2072 174 18 71 chr1 108336698 108337188 -173856476 + MLT2C2 LTR ERVL 1 464 0 605 329 13 30 chr1 108337233 108337467 -173856197 + MIR SINE MIR 20 249 -13 265 193 35 0 chr1 108337708 108337765 -173855899 - MER103 DNA DNA -46 120 62 403 287 45 0 chr1 108337790 108337947 -173855717 + MLT1I LTR MaLR 1 164 -245 40676 35 23 4 chr1 108338099 108340989 -173852675 - L1PA3 LINE L1 0 6155 3321 2839 13 0 0 chr1 108340989 108341300 -173852364 - AluYa5 SINE Alu 0 311 1 40676 35 23 4 chr1 108341300 108344440 -173849224 - L1PA3 LINE L1 -2834 3321 10 299 219 49 12 chr1 108344477 108344559 -173849105 + MLT1I LTR MaLR 316 400 -9 1994 175 35 29 chr1 108344638 108345187 -173848477 + MLT2A2 LTR ERVL 1 554 0 191 364 27 9 chr1 108345479 108345589 -173848075 + L2 LINE L2 2945 3056 -216 21 0 0 0 chr1 108345679 108345700 -173847964 + AT_rich Low_complexity Low_complexity 1 21 0 648 235 45 6 chr1 108345871 108346050 -173847614 - MIR SINE MIR -4 258 73 237 246 111 79 chr1 108346819 108346945 -173846719 - L2 LINE L2 -9 3304 3175 219 403 82 8 chr1 108347290 108347424 -173846240 - MIR3 SINE MIR -63 145 2 388 240 52 10 chr1 108348530 108348626 -173845038 + MIR SINE MIR 6 105 -157 411 280 0 33 chr1 108348667 108348817 -173844847 - MLT1H LTR MaLR -7 542 398 202 186 0 23 chr1 108348823 108348866 -173844798 - MIR SINE MIR -216 46 5 788 272 94 21 chr1 108348970 108349257 -173844407 - MLT1H LTR MaLR -241 308 1 444 228 0 0 chr1 108349257 108349349 -173844315 + MIR SINE MIR 140 231 -31 294 372 47 7 chr1 108349548 108349696 -173843968 + MIR3 SINE MIR 35 188 -20 1896 158 66 17 chr1 108351773 108352120 -173841544 + THE1B LTR MaLR 1 364 0 733 213 0 0 chr1 108352456 108352606 -173841058 + L1PA16 LINE L1 6017 6166 0 2075 158 54 19 chr1 108352617 108353099 -173840565 - L1MB2 LINE L1 -25 6146 5682 293 211 53 13 chr1 108353262 108353338 -173840326 + MLT1K LTR MaLR 510 588 0 21 36 0 0 chr1 108354053 108354081 -173839583 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 108354570 108354594 -173839070 + AT_rich Low_complexity Low_complexity 1 24 0 847 160 8 0 chr1 108354947 108355078 -173838586 + AluJo SINE Alu 6 137 -175 190 284 126 55 chr1 108355227 108355354 -173838310 - L2 LINE L2 0 3272 3137 4051 254 111 29 chr1 108357528 108359001 -173834663 + L1MEc LINE L1 54 1745 -4651 6269 27 1 0 chr1 108359001 108359736 -173833928 + L1PA4 LINE L1 5419 6154 -1 4051 254 111 29 chr1 108359736 108360352 -173833312 + L1MEc LINE L1 1745 2309 -4087 2081 243 100 16 chr1 108360350 108361030 -173832634 + L1MEc LINE L1 3668 4404 -1811 * 531 229 25 0 chr1 108361058 108361180 -173832484 + L1MEc LINE L1 4686 4810 -1405 1071 157 67 0 chr1 108361202 108361412 -173832252 - L1MC3 LINE L1 -657 7128 6905 960 169 7 0 chr1 108361464 108361612 -173832052 + AluJo SINE Alu 134 282 -30 1883 217 76 27 chr1 108361633 108361659 -173832005 + L1MEc LINE L1 4816 4839 -1427 2017 139 19 45 chr1 108361659 108362033 -173831631 - THE1B LTR MaLR 0 364 1 1883 217 76 27 chr1 108362033 108362643 -173831021 + L1MEc LINE L1 4839 5477 -789 507 118 80 14 chr1 108362646 108363154 -173830510 + (TA)n Simple_repeat Simple_repeat 1 541 0 255 110 105 0 chr1 108363167 108363414 -173830250 + (TA)n Simple_repeat Simple_repeat 1 273 0 1291 255 127 21 chr1 108363423 108364077 -173829587 + L1MB8 LINE L1 5397 6310 -24 237 122 0 0 chr1 108364398 108364439 -173829225 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 -5 1299 20 0 0 chr1 108364439 108364591 -173829073 - L1PA4 LINE L1 -11 6144 5993 237 122 0 0 chr1 108364591 108364598 -173829066 + (TTTTTA)n Simple_repeat Simple_repeat 44 50 0 26 74 0 0 chr1 108364996 108365050 -173828614 + AT_rich Low_complexity Low_complexity 1 54 0 7864 172 71 104 chr1 108365559 108366022 -173827642 - L1MC3 LINE L1 -18 7767 7290 2368 55 0 10 chr1 108366022 108366330 -173827334 - AluY SINE Alu -6 305 1 7864 172 71 104 chr1 108366330 108367874 -173825790 - L1MC3 LINE L1 -495 7290 5848 2246 104 30 0 chr1 108367874 108368209 -173825455 + L1PA13 LINE L1 5814 6158 -5 7864 172 71 104 chr1 108368209 108368567 -173825097 - L1MC3 LINE L1 -1937 5848 5480 2191 271 17 27 chr1 108368560 108369463 -173824201 - L1MCb LINE L1 -3318 3246 2388 * 4647 139 13 97 chr1 108369459 108370479 -173823185 - L1MA9 LINE L1 0 7272 6339 1374 104 30 24 chr1 108370479 108370837 -173822827 - MSTA LTR MaLR 0 428 1 5272 167 28 56 chr1 108370837 108371900 -173821764 - L1MA9 LINE L1 -763 6343 5252 1961 140 32 69 chr1 108371900 108372278 -173821386 + THE1B LTR MaLR 1 364 0 11200 104 15 0 chr1 108372287 108373844 -173819820 + THE1B-int LTR MaLR 1 1580 0 1753 164 44 33 chr1 108373844 108374204 -173819460 + THE1B LTR MaLR 1 364 0 5272 167 28 56 chr1 108374204 108374315 -173819349 - L1MA9 LINE L1 -1860 5246 5191 2535 254 121 40 chr1 108374305 108376003 -173817661 - L1MA9 LINE L1 -4562 2475 1 * 7394 35 0 0 chr1 108376041 108377055 -173816609 - L1PA4 LINE L1 -3 6152 5137 2556 38 0 3 chr1 108377055 108377373 -173816291 + L1PA4 LINE L1 4842 5158 -988 * 3126 213 161 133 chr1 108377362 108379476 -173814188 - L1MCb LINE L1 -4235 2329 46 19947 184 28 22 chr1 108380710 108387347 -173806317 - L1PA13 LINE L1 -4 6810 1 289 331 89 99 chr1 108388829 108389131 -173804533 - L3 LINE CR1 -28 1549 1251 325 232 12 12 chr1 108389228 108389310 -173804354 + MIR SINE MIR 151 232 -30 867 323 32 42 chr1 108389331 108389381 -173804283 - L3 LINE CR1 -366 1211 1162 1902 132 49 0 chr1 108389381 108389669 -173803995 - AluSx SINE Alu -10 302 1 867 323 32 42 chr1 108389669 108390051 -173803613 - L3 LINE CR1 -415 1162 783 210 370 46 0 chr1 108390127 108390235 -173803429 + MIR SINE MIR 134 246 -16 194 353 121 17 chr1 108390293 108390409 -173803255 - L3 LINE CR1 -940 637 510 443 317 124 0 chr1 108390927 108391072 -173802592 - L2 LINE L2 0 3272 3110 14135 201 37 17 chr1 108391330 108391944 -173801720 - L1PA13 LINE L1 -1765 5032 4432 2522 62 3 0 chr1 108391944 108392252 -173801412 + AluSp SINE Alu 1 309 -4 14135 201 37 17 chr1 108392252 108395514 -173798150 - L1PA13 LINE L1 -2365 4432 1083 1509 228 57 26 chr1 108395518 108396009 -173797655 + L1MC4 LINE L1 7531 8036 -6 351 226 68 7 chr1 108396013 108396159 -173797505 + L1M4 LINE L1 5191 5345 -801 362 284 43 16 chr1 108396228 108396592 -173797072 - L1MDa LINE L1 -3728 2401 2030 29 28 0 0 chr1 108396606 108396642 -173797022 + AT_rich Low_complexity Low_complexity 1 36 0 349 261 35 0 chr1 108396996 108397134 -173796530 - L1MDa LINE L1 -863 1627 1384 797 289 88 65 chr1 108397201 108397973 -173795691 - L1MDa LINE L1 -4865 1254 465 2156 114 0 0 chr1 108397997 108398309 -173795355 + AluSc SINE Alu 1 309 0 7025 56 6 0 chr1 108398309 108399503 -173794161 + L1PA7 LINE L1 4954 6152 -2 258 238 48 0 chr1 108399550 108399613 -173794051 - L1MDa LINE L1 -5798 321 256 217 170 38 19 chr1 108399957 108400010 -173793654 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 356 396 46 5 chr1 108400304 108400521 -173793143 - L1ME LINE L1 -408 5754 5529 1091 296 65 35 chr1 108401784 108402244 -173791420 - MLT1J LTR MaLR -33 478 5 31 0 0 0 chr1 108402740 108402771 -173790893 + AT_rich Low_complexity Low_complexity 1 31 0 1016 263 93 38 chr1 108402775 108403193 -173790471 + LTR16A1 LTR ERVL 17 457 0 2041 133 3 0 chr1 108403402 108403702 -173789962 + AluSq SINE Alu 1 301 -12 21 57 0 0 chr1 108403759 108403794 -173789870 + AT_rich Low_complexity Low_complexity 1 35 0 2035 92 69 12 chr1 108404973 108405308 -173788356 - L1PA10 LINE L1 -4 6164 5811 2201 104 0 19 chr1 108405535 108405851 -173787813 - AluSx SINE Alu 0 312 3 2070 227 109 87 chr1 108406095 108407280 -173786384 - L1MC4a LINE L1 -1333 6544 5334 1035 153 9 90 chr1 108407361 108407583 -173786081 + MER3 DNA MER1_type 6 209 0 241 130 0 87 chr1 108407548 108407594 -173786070 - MER3 DNA MER1_type -127 82 41 * 516 276 180 7 chr1 108407605 108408050 -173785614 - L1MC4a LINE L1 -1120 5095 4574 364 244 0 0 chr1 108408047 108408129 -173785535 - L1MC4 LINE L1 -646 7396 7315 * 450 300 86 0 chr1 108408129 108408362 -173785302 - L1MC4a LINE L1 -2299 3916 3664 660 287 36 15 chr1 108408382 108408772 -173784892 - L1MC4a LINE L1 -2745 3470 3073 197 103 69 11 chr1 108408792 108408879 -173784785 + (TTATA)n Simple_repeat Simple_repeat 3 94 0 23 0 0 0 chr1 108408892 108408915 -173784749 + AT_rich Low_complexity Low_complexity 1 23 0 997 255 107 49 chr1 108408930 108409760 -173783904 - L1MC4a LINE L1 -3159 3056 2179 647 307 49 9 chr1 108410084 108410429 -173783235 - L1MC4a LINE L1 -4727 1669 1311 545 272 168 0 chr1 108411187 108411360 -173782304 + MIR SINE MIR 12 213 -49 269 340 66 0 chr1 108411702 108411808 -173781856 + L2 LINE L2 3160 3272 0 355 218 23 23 chr1 108413434 108413521 -173780143 - MER58 DNA MER1_type -1 2419 128 1662 140 35 70 chr1 108413532 108413931 -173779733 - L1MA7 LINE L1 -2 6289 5905 533 235 0 0 chr1 108413931 108414029 -173779635 - Tigger7 DNA MER2_type 0 2587 2490 1135 213 0 0 chr1 108414030 108414227 -173779437 - Tigger7 DNA MER2_type -2222 265 69 338 382 46 7 chr1 108414394 108414546 -173779118 - MER5A DNA MER1_type -1 188 31 421 214 48 0 chr1 108414628 108414712 -173778952 - LTR32 LTR ERVL -3 468 381 2499 195 16 8 chr1 108414729 108415226 -173778438 - MER41B LTR ERV1 -5 630 130 1904 170 82 0 chr1 108415254 108415596 -173778068 - LTR32 LTR ERVL -87 384 15 570 198 41 0 chr1 108415600 108415721 -173777943 + MIR SINE MIR 127 252 -10 358 197 0 42 chr1 108415931 108416002 -173777662 - LTR29 LTR ERV1 0 622 555 * 1259 146 55 23 chr1 108415986 108416256 -173777408 - LTR49 LTR ERV1 -337 258 2 674 165 41 0 chr1 108416454 108416575 -173777089 - MER41B LTR ERV1 0 635 510 2352 141 13 3 chr1 108416581 108416965 -173776699 - MER41B LTR ERV1 -247 388 1 16780 111 21 19 chr1 108416967 108417702 -173775962 - MER41B-int LTR ERV1 0 5946 5214 2163 102 0 3 chr1 108417702 108418013 -173775651 - AluSq SINE Alu 0 312 3 16780 111 21 19 chr1 108418013 108419917 -173773747 - MER41B-int LTR ERV1 -732 5214 3300 3556 156 16 30 chr1 108419904 108420706 -173772958 - MER41B-int LTR ERV1 -3000 3358 2167 * 802 167 5 99 chr1 108420702 108420843 -173772821 - MER57-int LTR ERV1 -4908 2629 2509 * 2027 142 0 3 chr1 108420843 108421145 -173772519 + AluSq SINE Alu 1 301 -12 802 167 5 99 chr1 108421145 108421195 -173772469 - MER57-int LTR ERV1 -5028 2509 2456 * 1363 178 9 0 chr1 108421172 108421397 -173772267 - MER57-int LTR ERV1 -4328 1618 1392 2836 126 12 79 chr1 108421398 108421915 -173771749 - MER57-int LTR ERV1 -5256 690 209 376 281 46 61 chr1 108421915 108422111 -173771553 + MLT1I LTR MaLR 94 286 -123 262 355 53 30 chr1 108422318 108422580 -173771084 + L2 LINE L2 2066 2333 -981 2299 119 3 0 chr1 108422583 108422895 -173770769 - AluSp SINE Alu 0 313 1 697 314 112 32 chr1 108422987 108423363 -173770301 + L2 LINE L2 2908 3313 0 212 297 0 27 chr1 108423389 108423463 -173770201 + L2 LINE L2 2412 2483 -831 192 77 0 0 chr1 108423882 108423908 -173769756 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 641 253 82 22 chr1 108425095 108425277 -173768387 - MIR SINE MIR 0 262 70 1209 118 123 0 chr1 108426153 108426356 -173767308 + MER30 DNA MER1_type 1 228 -2 21 95 0 0 chr1 108427878 108427941 -173765723 + AT_rich Low_complexity Low_complexity 1 63 0 807 304 76 5 chr1 108427995 108428377 -173765287 - L1MC/D LINE L1 -2036 5772 5364 460 272 101 32 chr1 108428698 108429044 -173764620 + L1MDa LINE L1 1659 2028 -4512 9192 179 23 5 chr1 108429295 108432075 -173761589 - L1MA5A LINE L1 -5 6292 3467 1894 251 19 23 chr1 108432095 108432141 -173761523 - L1MA5A LINE L1 -3408 2738 2693 5427 158 22 33 chr1 108432141 108433220 -173760444 + MER11C LTR ERVK 1 1067 -4 1894 251 19 23 chr1 108433220 108433742 -173759922 - L1MA5A LINE L1 -3453 2693 2172 25 51 0 0 chr1 108433748 108433787 -173759877 + AT_rich Low_complexity Low_complexity 1 39 0 541 128 11 0 chr1 108433787 108433881 -173759783 - L1MA3 LINE L1 -13 6292 6198 590 309 51 25 chr1 108434074 108434349 -173759315 + L1MEc LINE L1 46 327 -6069 439 321 35 14 chr1 108434374 108434706 -173758958 + L1MEc LINE L1 35 559 -5837 2896 282 54 21 chr1 108434796 108435441 -173758223 + L1MEc LINE L1 672 1294 -4921 904 58 0 17 chr1 108435441 108435561 -173758103 + L1PA7 LINE L1 6034 6151 -3 2896 282 54 21 chr1 108435561 108436354 -173757310 + L1MEc LINE L1 1294 2059 -4156 2148 117 0 0 chr1 108436354 108436644 -173757020 + AluSx SINE Alu 1 290 -22 2896 282 54 21 chr1 108436644 108436662 -173757002 + L1MEc LINE L1 2059 2075 -4140 207 0 0 0 chr1 108436662 108436685 -173756979 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2896 282 54 21 chr1 108436685 108437564 -173756100 + L1MEc LINE L1 2075 3053 -3162 898 205 13 0 chr1 108437579 108437735 -173755929 - MER20 DNA MER1_type -61 158 1 343 262 9 9 chr1 108437735 108437842 -173755822 + L1MEc LINE L1 3048 3154 -3061 1165 233 39 26 chr1 108438017 108438399 -173755265 + L1M4 LINE L1 4407 4793 -1353 1719 276 65 6 chr1 108438468 108439280 -173754384 + L1MEc LINE L1 2736 3595 -2620 588 245 2 102 chr1 108439322 108439606 -173754058 + L1MEc LINE L1 4031 4293 -1922 22 70 0 0 chr1 108439650 108439693 -173753971 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1 108439714 108439738 -173753926 + AT_rich Low_complexity Low_complexity 1 24 0 1598 220 73 48 chr1 108439824 108440387 -173753277 + L1MEc LINE L1 4338 4914 -1301 39811 56 2 1 chr1 108440487 108446366 -173747298 + L1PA5 LINE L1 267 6146 -8 192 217 253 24 chr1 108446539 108446622 -173747042 - MIR SINE MIR -49 213 112 411 292 18 9 chr1 108448642 108448755 -173744909 + L2 LINE L2 3200 3313 0 180 326 0 58 chr1 108449078 108449164 -173744500 + L3b LINE CR1 1482 1562 -21 222 149 21 0 chr1 108449893 108449940 -173743724 + A-rich Low_complexity Low_complexity 2 49 0 287 278 61 26 chr1 108451530 108451645 -173742019 + MIR3 SINE MIR 73 191 -17 520 248 0 0 chr1 108451995 108452100 -173741564 - Tigger7 DNA MER2_type -2380 107 3 232 167 0 0 chr1 108452100 108452142 -173741522 - L1M1 LINE L1 -393 5907 5866 * 2991 144 44 11 chr1 108452123 108452729 -173740935 - L1MA7 LINE L1 -446 5845 5219 538 254 18 0 chr1 108452741 108452855 -173740809 - MER58 DNA MER1_type -99 116 1 468 301 20 0 chr1 108453545 108453691 -173739973 - MLT1J LTR MaLR -40 471 323 1059 244 37 26 chr1 108453753 108454024 -173739640 + L1M3e LINE L1 1 274 -6756 1635 226 42 19 chr1 108454075 108454739 -173738925 + L1M3e LINE L1 1606 2294 -4743 1002 243 25 113 chr1 108454740 108455139 -173738525 + MLT1A1 LTR MaLR 1 364 -1 11771 198 54 52 chr1 108455152 108458532 -173735132 + L1MA9 LINE L1 1161 4565 -1983 1731 182 31 0 chr1 108458532 108458823 -173734841 + AluJb SINE Alu 1 300 -12 11771 198 54 52 chr1 108458823 108460786 -173732878 + L1MA9 LINE L1 4565 6523 -25 381 212 0 0 chr1 108461601 108461667 -173731997 - AluJ/FLAM SINE Alu -236 66 1 1558 138 13 105 chr1 108461719 108462024 -173731640 + AluJb SINE Alu 1 277 -35 226 286 16 0 chr1 108462362 108462425 -173731239 + MER5B DNA MER1_type 4 67 -111 526 296 37 6 chr1 108462528 108462690 -173730974 + MIR SINE MIR 1 167 -95 325 336 64 14 chr1 108462733 108462873 -173730791 - MIR SINE MIR -61 201 55 315 378 58 9 chr1 108462922 108463266 -173730398 - L2 LINE L2 -963 2351 1991 2396 142 14 67 chr1 108463723 108464229 -173729435 + L1MA6 LINE L1 5764 6242 -58 721 260 82 9 chr1 108465496 108465715 -173727949 + MIR SINE MIR 28 262 0 186 71 0 0 chr1 108465723 108465751 -173727913 + (TG)n Simple_repeat Simple_repeat 1 28 0 243 203 0 0 chr1 108466219 108466278 -173727386 + (TA)n Simple_repeat Simple_repeat 2 60 0 356 277 81 20 chr1 108467571 108467719 -173725945 + MIR SINE MIR 55 211 -51 4827 156 24 7 chr1 108467817 108468693 -173724971 - L1MA8 LINE L1 -1 6290 5400 214 286 70 80 chr1 108468890 108469089 -173724575 - L2 LINE L2 -210 3062 2866 1592 195 24 7 chr1 108469554 108469733 -173723931 - AluJb SINE Alu -9 303 116 279 79 0 0 chr1 108469733 108469771 -173723893 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1592 195 24 7 chr1 108469771 108469889 -173723775 - AluJb SINE Alu -196 116 1 1264 217 130 3 chr1 108470355 108470655 -173723009 + MER58B DNA MER1_type 4 341 0 364 264 114 7 chr1 108471478 108471618 -173722046 + MIR SINE MIR 102 256 -6 221 297 40 0 chr1 108472088 108472162 -173721502 - L2 LINE L2 -9 3304 3228 3548 113 6 17 chr1 108472185 108472578 -173721086 + L1PA14 LINE L1 5344 5731 -430 1875 148 60 35 chr1 108472578 108472944 -173720720 - THE1C LTR MaLR 0 375 1 3548 113 6 17 chr1 108472944 108473089 -173720575 + L1PA14 LINE L1 5731 5876 -285 2329 117 14 0 chr1 108473090 108473440 -173720224 + L1PA14 LINE L1 5805 6159 -2 208 313 106 28 chr1 108473482 108473661 -173720003 - L2 LINE L2 -147 3166 2974 795 316 80 35 chr1 108473664 108474040 -173719624 + LTR33 LTR ERVL 6 398 -123 773 285 29 21 chr1 108474627 108474869 -173718795 + MIR SINE MIR 15 258 -4 234 309 116 44 chr1 108474947 108475128 -173718536 + L2 LINE L2 3120 3313 0 209 337 120 23 chr1 108475252 108475427 -173718237 - L3b LINE CR1 -141 1442 1251 201 39 0 0 chr1 108476744 108476770 -173716894 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2483 300 64 43 chr1 108477968 108479595 -173714069 + L1ME LINE L1 10 1593 -4622 2203 149 65 7 chr1 108479603 108480006 -173713658 + MSTA LTR MaLR 1 426 -2 8723 171 41 28 chr1 108480012 108481639 -173712025 + MSTA-int LTR MaLR 5 1651 0 2304 143 59 7 chr1 108481639 108482044 -173711620 + MSTA LTR MaLR 1 426 -2 2054 249 41 44 chr1 108482057 108483345 -173710319 + L1ME LINE L1 1677 2936 -3279 444 306 168 40 chr1 108483353 108483751 -173709913 + L1ME LINE L1 4180 4628 -1587 430 192 34 20 chr1 108483768 108483914 -173709750 + GA-rich Low_complexity Low_complexity 3 150 0 571 357 79 5 chr1 108483915 108484307 -173709357 + L1ME LINE L1 4652 5072 -1143 3625 168 84 27 chr1 108484488 108485243 -173708421 + L1MC3 LINE L1 6918 7725 -60 2011 183 19 6 chr1 108485243 108485603 -173708061 - MLT1A1 LTR MaLR 0 365 1 3625 168 84 27 chr1 108485603 108485667 -173707997 + L1MC3 LINE L1 7725 7784 -1 270 282 21 25 chr1 108485662 108485957 -173707707 + L1ME LINE L1 5260 5553 -756 * 1493 159 189 32 chr1 108486201 108486571 -173707093 + MSTA LTR MaLR 1 428 0 1565 170 103 0 chr1 108486647 108486929 -173706735 - AluJb SINE Alu -1 311 1 2420 59 7 16 chr1 108487085 108487392 -173706272 + AluY SINE Alu 1 304 -7 253 264 55 0 chr1 108487392 108487483 -173706181 + Charlie2b DNA MER1_type 560 655 -2127 857 166 44 0 chr1 108487585 108487766 -173705898 + Charlie2a DNA MER1_type 1478 1666 -1196 277 265 51 0 chr1 108487771 108487869 -173705795 + Charlie2a DNA MER1_type 2716 2818 -44 270 248 1 10 chr1 108487870 108487976 -173705688 + L1ME LINE L1 5807 5910 -329 900 285 155 44 chr1 108488038 108488560 -173705104 - L2 LINE L2 -16 3297 2738 1321 269 82 27 chr1 108488881 108489995 -173703669 + L1ME3A LINE L1 3573 4624 -1546 2138 90 29 0 chr1 108489995 108490299 -173703365 + AluY SINE Alu 1 312 0 1321 269 82 27 chr1 108490299 108491570 -173702094 + L1ME3A LINE L1 4624 6158 -12 21 100 0 0 chr1 108491615 108491685 -173701979 + AT_rich Low_complexity Low_complexity 1 70 0 1888 159 33 49 chr1 108491846 108492237 -173701427 - MLT1B LTR MaLR 0 390 6 1906 152 50 17 chr1 108493414 108493776 -173699888 + THE1C LTR MaLR 2 375 0 182 211 84 70 chr1 108493826 108493897 -173699767 + L2 LINE L2 3011 3082 -190 258 210 49 37 chr1 108493972 108494053 -173699611 + L2 LINE L2 3195 3276 -37 21 0 0 0 chr1 108495676 108495697 -173697967 + AT_rich Low_complexity Low_complexity 1 21 0 188 229 0 0 chr1 108500424 108500459 -173693205 + MIR3 SINE MIR 122 156 -52 1103 168 39 0 chr1 108500546 108500749 -173692915 - AluJo SINE Alu -15 297 87 333 0 0 0 chr1 108500957 108500994 -173692670 + (CA)n Simple_repeat Simple_repeat 2 38 0 2081 115 7 7 chr1 108502665 108502953 -173690711 - AluSx SINE Alu -20 292 5 669 189 37 52 chr1 108503031 108503222 -173690442 - MER53 DNA DNA -1 188 1 218 352 55 0 chr1 108503875 108503966 -173689698 - L2 LINE L2 -53 3219 3124 624 288 22 5 chr1 108507040 108507224 -173686440 + MIR3 SINE MIR 16 202 -6 868 215 15 31 chr1 108507525 108507720 -173685944 + MER20 DNA MER1_type 24 215 -4 2322 101 0 0 chr1 108510071 108510369 -173683295 + AluY SINE Alu 1 298 -13 3742 133 43 129 chr1 108511472 108512997 -173680667 - pTR5 LTR ERV1 0 2606 1524 1279 267 112 57 chr1 108513513 108513994 -173679670 + HAL1 LINE L1 33 486 -2021 936 173 12 0 chr1 108513994 108514156 -173679508 + U1 snRNA snRNA 2 165 0 1279 267 112 57 chr1 108514156 108514826 -173678838 + HAL1 LINE L1 486 1247 -1260 30 0 0 0 chr1 108514851 108514881 -173678783 + AT_rich Low_complexity Low_complexity 1 30 0 352 277 81 20 chr1 108515013 108515161 -173678503 + MIR SINE MIR 55 211 -51 4573 157 23 7 chr1 108515259 108516136 -173677528 - L1MA8 LINE L1 -1 6290 5400 225 311 68 78 chr1 108516325 108516531 -173677133 - L2 LINE L2 -203 3069 2866 1622 195 24 7 chr1 108516996 108517175 -173676489 - AluJb SINE Alu -9 303 116 279 79 0 0 chr1 108517175 108517213 -173676451 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1622 195 24 7 chr1 108517213 108517331 -173676333 - AluJb SINE Alu -196 116 1 1218 220 130 3 chr1 108517797 108518097 -173675567 + MER58B DNA MER1_type 4 341 0 359 264 114 7 chr1 108518920 108519060 -173674604 + MIR SINE MIR 102 256 -6 220 297 40 0 chr1 108519530 108519604 -173674060 - L2 LINE L2 -9 3304 3228 3368 113 6 17 chr1 108519627 108520020 -173673644 + L1PA14 LINE L1 5344 5731 -430 1875 148 60 35 chr1 108520020 108520386 -173673278 - THE1C LTR MaLR 0 375 1 3368 113 6 17 chr1 108520386 108520531 -173673133 + L1PA14 LINE L1 5731 5876 -285 2334 114 14 0 chr1 108520532 108520882 -173672782 + L1PA14 LINE L1 5805 6159 -2 209 302 112 34 chr1 108520924 108521103 -173672561 - L2 LINE L2 -147 3166 2974 690 314 80 35 chr1 108521106 108521482 -173672182 + LTR33 LTR ERVL 6 398 -123 1507 184 83 12 chr1 108521876 108522212 -173671452 - MLT1A1 LTR MaLR 0 365 6 1143 308 58 25 chr1 108522288 108522956 -173670708 + ERVL LTR ERVL 2241 2930 -2724 219 36 0 0 chr1 108522969 108522997 -173670667 + (CA)n Simple_repeat Simple_repeat 1 28 0 1550 207 49 41 chr1 108523120 108523538 -173670126 + MSTC LTR MaLR 8 428 0 1159 329 57 24 chr1 108523560 108524910 -173668754 + ERVL LTR ERVL 3589 5029 -735 21 0 0 0 chr1 108525006 108525027 -173668637 + AT_rich Low_complexity Low_complexity 1 21 0 380 321 149 36 chr1 108525032 108525556 -173668108 - L2 LINE L2 -320 2952 2292 277 350 25 31 chr1 108526218 108526381 -173667283 - MLT1K LTR MaLR -341 247 86 4830 73 16 5 chr1 108526415 108527305 -173666359 - L1PA8 LINE L1 -574 5557 4664 4345 83 8 3 chr1 108527305 108527928 -173665736 + L1PA8 LINE L1 5558 6172 0 303 306 36 48 chr1 108529418 108529892 -173663772 - L1M4 LINE L1 -1089 5040 4573 611 294 78 40 chr1 108529956 108530623 -173663041 - L1MEc LINE L1 -2643 3486 2769 807 167 0 0 chr1 108530623 108530749 -173662915 - FLAM_C SINE Alu -7 126 1 611 294 78 40 chr1 108530749 108531059 -173662605 - L1MEc LINE L1 -3360 2769 2472 28 0 0 0 chr1 108531059 108531087 -173662577 + AT_rich Low_complexity Low_complexity 1 28 0 298 172 0 17 chr1 108531094 108531152 -173662512 + Tigger2 DNA MER2_type 14 70 -2648 784 242 0 28 chr1 108531188 108531370 -173662294 - MER8 DNA MER2_type -62 177 1 515 329 41 56 chr1 108531396 108531883 -173661781 - L1MEc LINE L1 -3684 2445 2007 548 245 13 122 chr1 108532478 108532715 -173660949 - MIR SINE MIR -51 211 1 934 200 42 23 chr1 108532779 108532905 -173660759 - MER58B DNA MER1_type -2087 333 211 1926 129 0 0 chr1 108532905 108533168 -173660496 + AluSx SINE Alu 31 293 -19 934 200 42 23 chr1 108533168 108533301 -173660363 - MER58B DNA MER1_type -2209 211 69 1588 206 138 18 chr1 108533303 108533759 -173659905 + L1MCa LINE L1 20 530 -5896 205 224 0 26 chr1 108533847 108533923 -173659741 + (TATG)n Simple_repeat Simple_repeat 4 77 0 566 247 24 0 chr1 108533928 108534098 -173659566 + L1MC2 LINE L1 6168 6341 -3 257 254 101 42 chr1 108534254 108534471 -173659193 - L1MEc LINE L1 -4704 1606 1377 39 0 0 0 chr1 108534576 108534615 -173659049 + AT_rich Low_complexity Low_complexity 1 39 0 1060 337 15 15 chr1 108534717 108535112 -173658552 + LTR16C LTR ERVL 89 483 -8 433 365 50 41 chr1 108535116 108535221 -173658443 - L1MEc LINE L1 -5295 824 721 225 0 0 0 chr1 108535221 108535246 -173658418 + (TG)n Simple_repeat Simple_repeat 2 26 0 433 365 50 41 chr1 108535246 108535458 -173658206 - L1MEc LINE L1 -5398 721 504 253 326 74 16 chr1 108535708 108535898 -173657766 - L1MEc LINE L1 -5644 475 275 24 32 0 0 chr1 108536168 108536199 -173657465 + AT_rich Low_complexity Low_complexity 1 31 0 575 326 6 12 chr1 108536304 108536476 -173657188 - MER5B DNA MER1_type -4 174 4 590 318 41 25 chr1 108536879 108537124 -173656540 + MIR SINE MIR 14 262 0 288 313 7 73 chr1 108537297 108537447 -173656217 - L2 LINE L2 0 3272 3133 348 94 0 0 chr1 108537507 108537560 -173656104 + (CA)n Simple_repeat Simple_repeat 1 53 0 229 333 53 0 chr1 108538164 108538278 -173655386 - MIR SINE MIR -89 173 54 301 252 84 23 chr1 108540728 108540859 -173652805 - MLT1L LTR MaLR -10 605 467 321 281 120 28 chr1 108540890 108541107 -173652557 - MLT1L LTR MaLR -225 390 154 2168 127 0 0 chr1 108541193 108541485 -173652179 + AluSx SINE Alu 1 292 -20 247 278 22 11 chr1 108541536 108541626 -173652038 - LTR33 LTR ERVL -104 417 327 421 249 93 44 chr1 108541703 108541908 -173651756 - LTR33 LTR ERVL -306 215 1 399 309 58 16 chr1 108542616 108542807 -173650857 - MIR SINE MIR -58 204 6 238 278 0 0 chr1 108543059 108543113 -173650551 + GA-rich Low_complexity Low_complexity 3 56 0 475 357 68 37 chr1 108543599 108544112 -173649552 + L2 LINE L2 2365 2893 -421 1345 324 61 51 chr1 108544994 108545809 -173647855 - L2 LINE L2 0 3313 2463 2213 122 20 0 chr1 108545809 108546112 -173647552 + AluSx SINE Alu 1 309 -3 1345 324 61 51 chr1 108546112 108546360 -173647304 - L2 LINE L2 -850 2463 2219 361 63 0 288 chr1 108546827 108546938 -173646726 - MADE1 DNA Mariner 0 80 2 247 346 87 39 chr1 108548498 108548625 -173645039 + L2 LINE L2 3122 3254 -18 300 299 0 0 chr1 108549471 108549548 -173644116 + MIR SINE MIR 70 146 -62 5563 125 37 35 chr1 108549554 108550107 -173643557 + Tigger3b DNA MER2_type 1 552 -2476 2076 134 0 3 chr1 108550107 108550405 -173643259 - AluSx SINE Alu -15 297 1 5563 125 37 35 chr1 108550405 108550745 -173642919 + Tigger3b DNA MER2_type 552 890 -2138 198 0 0 0 chr1 108550745 108550767 -173642897 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1738 160 0 53 chr1 108550770 108551070 -173642594 - AluJo SINE Alu -28 284 1 5563 125 37 35 chr1 108551070 108551313 -173642351 + Tigger3b DNA MER2_type 891 1199 -32 2569 166 38 25 chr1 108551622 108551799 -173641865 + MER50 LTR ERV1 1 174 -560 2246 117 10 0 chr1 108551799 108552108 -173641556 + AluSq SINE Alu 1 312 -1 2569 166 38 25 chr1 108552108 108552483 -173641181 + MER50 LTR ERV1 174 560 -174 1667 108 170 81 chr1 108552483 108552854 -173640810 - MER4A LTR ERV1 0 664 261 580 120 0 20 chr1 108552854 108552954 -173640710 - MER4A LTR ERV1 -566 98 1 * 884 169 0 24 chr1 108552954 108553109 -173640555 + MER50 LTR ERV1 561 711 -23 254 363 24 16 chr1 108553460 108553584 -173640080 + L3b LINE CR1 1405 1529 -54 2447 70 0 3 chr1 108553734 108554036 -173639628 - AluY SINE Alu -10 301 1 388 322 0 94 chr1 108554238 108554332 -173639332 - MER5A DNA MER1_type -6 183 116 2213 60 0 0 chr1 108554332 108554601 -173639063 + AluY SINE Alu 32 300 -11 388 322 0 94 chr1 108554601 108554708 -173638956 - MER5A DNA MER1_type -73 116 1 1957 227 55 26 chr1 108554851 108555639 -173638025 + L1ME1 LINE L1 4704 5508 -743 690 260 55 52 chr1 108555648 108556013 -173637651 + L1ME1 LINE L1 5792 6157 -9 614 293 30 32 chr1 108556027 108556467 -173637197 + HAL1 LINE L1 2000 2438 -69 520 216 10 0 chr1 108556970 108557072 -173636592 - MLT1E1 LTR MaLR -48 606 504 438 229 53 6 chr1 108557126 108557296 -173636368 + L1ME2 LINE L1 5795 5972 -192 1437 246 27 35 chr1 108557310 108557808 -173635856 - MLT1E1 LTR MaLR -185 469 1 1716 198 14 16 chr1 108557905 108558269 -173635395 + MLT1A1 LTR MaLR 1 363 -2 11899 139 62 17 chr1 108558465 108564907 -173628757 + L1PA3 LINE L1 6 6868 -3 9058 194 11 6 chr1 108564913 108567609 -173626055 + L1PB1 LINE L1 3212 5916 -235 5820 181 18 13 chr1 108567731 108569355 -173624309 + L1MC1 LINE L1 4699 6332 -1 2932 166 18 32 chr1 108569409 108569962 -173623702 + MER74A LTR ERVL 14 558 0 39 38 0 0 chr1 108570194 108570247 -173623417 + AT_rich Low_complexity Low_complexity 1 53 0 487 281 43 24 chr1 108570691 108570855 -173622809 - MLT1H LTR MaLR -243 306 140 444 286 60 91 chr1 108571398 108571912 -173621752 + MLT1J LTR MaLR 11 508 -3 349 103 205 0 chr1 108571954 108572032 -173621632 + L1MA8 LINE L1 6194 6287 -4 21 0 0 0 chr1 108572032 108572053 -173621611 + AT_rich Low_complexity Low_complexity 1 21 0 274 203 47 0 chr1 108572359 108572423 -173621241 - L2 LINE L2 -3 3310 3244 3488 130 50 10 chr1 108572673 108573294 -173620370 - L1MA4 LINE L1 -6 6294 5649 1385 112 20 0 chr1 108574022 108574218 -173619446 - L1PA16 LINE L1 -293 5873 5674 1864 147 15 0 chr1 108574228 108574757 -173618907 - L1PA16 LINE L1 -740 5560 5024 2161 156 120 0 chr1 108574782 108575232 -173618432 + L1 LINE L1 4500 5003 -1143 1795 204 28 32 chr1 108575708 108575885 -173617779 + MLT1C LTR MaLR 4 180 -287 405 0 0 0 chr1 108575885 108575930 -173617734 + (CA)n Simple_repeat Simple_repeat 2 46 0 1795 204 28 32 chr1 108575930 108576218 -173617446 + MLT1C LTR MaLR 180 467 0 201 222 22 0 chr1 108576774 108576819 -173616845 + (TA)n Simple_repeat Simple_repeat 2 47 0 420 267 39 15 chr1 108578662 108578775 -173614889 - MER20B DNA MER1_type -49 170 53 1670 67 0 19 chr1 108578825 108579034 -173614630 - AluSg/x SINE Alu -24 286 82 236 299 184 25 chr1 108579189 108579390 -173614274 - L2 LINE L2 -1416 1898 1666 226 264 0 0 chr1 108579486 108579539 -173614125 + (TA)n Simple_repeat Simple_repeat 1 53 0 544 325 50 10 chr1 108580247 108580549 -173613115 + L1ME4a LINE L1 5331 5644 -477 385 307 88 47 chr1 108580618 108580846 -173612818 + L1ME4a LINE L1 5742 5992 -129 1387 164 206 0 chr1 108580846 108581026 -173612638 - MER44D DNA MER2_type -1882 609 467 186 43 0 0 chr1 108581026 108581049 -173612615 + (TC)n Simple_repeat Simple_repeat 2 24 0 1387 164 206 0 chr1 108581049 108581149 -173612515 - MER44D DNA MER2_type -2024 467 1 385 307 88 47 chr1 108581149 108581285 -173612379 + L1ME4a LINE L1 5992 6121 0 538 211 27 26 chr1 108581493 108581761 -173611903 + L1MB2 LINE L1 5825 6082 -89 473 178 40 30 chr1 108581733 108581834 -173611830 + L1M3f LINE L1 1238 1339 -5226 * 1389 192 23 63 chr1 108581838 108582281 -173611383 + L1M3f LINE L1 3182 3606 -3959 2471 189 30 42 chr1 108582281 108582923 -173610741 - L1P4 LINE L1 -749 5397 4764 1607 64 0 18 chr1 108582922 108583140 -173610524 + L1P4 LINE L1 5405 5618 -548 * 2054 146 30 86 chr1 108583126 108583593 -173610071 + L1MA4 LINE L1 5855 6295 -5 24 0 0 0 chr1 108583594 108583618 -173610046 + AT_rich Low_complexity Low_complexity 1 24 0 616 141 50 0 chr1 108583684 108583805 -173609859 + L1MB7 LINE L1 6058 6184 0 422 215 11 11 chr1 108583805 108583898 -173609766 + MIR SINE MIR 168 260 -2 601 182 59 81 chr1 108585491 108585727 -173607937 + AluSq SINE Alu 1 231 -82 234 262 115 0 chr1 108585961 108586022 -173607642 + MIR3 SINE MIR 111 178 -30 1643 199 18 0 chr1 108586342 108586628 -173607036 + AluJb SINE Alu 5 295 -17 535 98 37 0 chr1 108586745 108586827 -173606837 - L1MA3 LINE L1 -6 6299 6215 226 388 27 49 chr1 108586892 108587075 -173606589 - L2 LINE L2 -583 2731 2553 667 136 25 17 chr1 108587772 108587890 -173605774 - L1MA2 LINE L1 0 6304 6186 3394 193 7 24 chr1 108588171 108589081 -173604583 - L1PB4 LINE L1 -874 5272 4407 5049 143 32 7 chr1 108589083 108589944 -173603720 + L1PB4 LINE L1 5269 6151 -5 814 291 35 0 chr1 108589951 108590178 -173603486 + MIR SINE MIR 27 261 -1 509 369 53 14 chr1 108590207 108590562 -173603102 + L2 LINE L2 2494 2862 -452 221 374 12 0 chr1 108590613 108590696 -173602968 + L2 LINE L2 2959 3042 -230 201 237 0 0 chr1 108590818 108590856 -173602808 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 235 361 83 29 chr1 108591152 108591357 -173602307 - L2 LINE L2 -556 2758 2543 1747 124 0 0 chr1 108592744 108592985 -173600679 - AluSx SINE Alu -9 303 63 420 259 114 6 chr1 108593793 108593951 -173599713 - MIR SINE MIR 0 262 88 23 0 0 0 chr1 108594720 108594743 -173598921 + AT_rich Low_complexity Low_complexity 1 23 0 276 169 24 36 chr1 108595389 108595472 -173598192 + (TA)n Simple_repeat Simple_repeat 2 83 0 974 281 60 7 chr1 108596970 108597269 -173596395 - LTR16C LTR ERVL 0 491 177 2453 84 0 0 chr1 108597843 108598152 -173595512 + AluY SINE Alu 1 309 -2 2183 107 7 3 chr1 108598165 108598474 -173595190 + AluSg SINE Alu 1 310 0 712 297 140 9 chr1 108598530 108598949 -173594715 - MLT1J2 LTR MaLR -6 444 1 1438 176 40 7 chr1 108600409 108600682 -173592982 - L1PA16 LINE L1 -4 6162 5881 2071 80 23 4 chr1 108600704 108600966 -173592698 + AluSg SINE Alu 23 289 -21 21 0 0 0 chr1 108601644 108601665 -173591999 + AT_rich Low_complexity Low_complexity 1 21 0 2000 96 92 0 chr1 108603922 108604204 -173589460 + AluSp SINE Alu 1 308 -5 21 0 0 0 chr1 108604367 108604388 -173589276 + AT_rich Low_complexity Low_complexity 1 21 0 444 263 93 45 chr1 108605202 108605601 -173588063 - L1ME4a LINE L1 -17 6104 5687 290 366 46 13 chr1 108606007 108606160 -173587504 - MLT1I LTR MaLR -9 400 243 34 93 0 0 chr1 108607088 108607185 -173586479 + AT_rich Low_complexity Low_complexity 1 97 0 228 35 0 0 chr1 108607727 108607756 -173585908 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 476 290 90 55 chr1 108608446 108608646 -173585018 + MIR3 SINE MIR 2 208 0 305 286 226 0 chr1 108610449 108610617 -173583047 + MIR SINE MIR 51 256 -6 13439 165 25 4 chr1 108611170 108615919 -173577745 - L1PB1 LINE L1 0 6867 2018 38402 71 6 7 chr1 108615922 108622083 -173571581 - L1PA5 LINE L1 0 6154 1 4545 111 13 1 chr1 108622083 108622852 -173570812 - L1PB1 LINE L1 -4830 2033 1106 987 172 5 0 chr1 108622852 108623044 -173570620 - L1PB1 LINE L1 -6668 195 3 185 270 81 14 chr1 108623453 108623527 -173570137 + L2 LINE L2 1884 1962 -1352 253 258 31 21 chr1 108623604 108623701 -173569963 + MLT1J2 LTR MaLR 66 163 -287 379 306 83 16 chr1 108623762 108623955 -173569709 + MLT1J2 LTR MaLR 245 450 0 323 364 58 10 chr1 108624287 108624493 -173569171 + L2 LINE L2 2404 2619 -695 308 294 33 112 chr1 108624494 108624770 -173568894 + MIR SINE MIR 8 261 -1 24 0 0 0 chr1 108625011 108625035 -173568629 + AT_rich Low_complexity Low_complexity 1 24 0 2141 164 13 51 chr1 108625569 108625726 -173567938 + Tigger2a DNA MER2_type 1 162 -2546 2153 117 0 3 chr1 108625726 108626017 -173567647 - AluSx SINE Alu -22 290 1 2141 164 13 51 chr1 108626017 108626309 -173567355 + Tigger2a DNA MER2_type 162 433 -1 209 290 29 14 chr1 108626309 108626378 -173567286 - MIR SINE MIR -112 150 81 424 283 69 14 chr1 108627334 108627479 -173566185 + LTR33 LTR ERVL 31 183 -338 282 331 75 33 chr1 108627504 108627839 -173565825 + LTR33 LTR ERVL 162 510 -11 2079 94 0 8 chr1 108628571 108628837 -173564827 + AluSp SINE Alu 1 264 -49 278 0 54 0 chr1 108628848 108628885 -173564779 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 671 172 0 16 chr1 108628907 108629029 -173564635 + FLAM_C SINE Alu 23 142 -1 2436 276 83 30 chr1 108631106 108632326 -173561338 + L1ME3 LINE L1 3391 4546 -1624 1526 204 27 10 chr1 108632326 108632620 -173561044 - AluJb SINE Alu -13 299 1 2436 276 83 30 chr1 108632620 108632808 -173560856 + L1ME3 LINE L1 4546 4723 -1447 2214 115 3 0 chr1 108632808 108633104 -173560560 + AluSx SINE Alu 3 299 -13 2436 276 83 30 chr1 108633104 108633960 -173559704 + L1ME3 LINE L1 4723 5780 -390 2039 126 21 3 chr1 108633960 108634245 -173559419 + AluSx SINE Alu 1 290 -22 2436 276 83 30 chr1 108634245 108634298 -173559366 + L1ME3 LINE L1 5780 5829 -341 23 0 0 0 chr1 108634598 108634621 -173559043 + AT_rich Low_complexity Low_complexity 1 23 0 594 282 66 7 chr1 108634622 108634895 -173558769 + L1ME3 LINE L1 5856 6144 -18 226 250 0 14 chr1 108634900 108634972 -173558692 + (TAAA)n Simple_repeat Simple_repeat 1 71 0 1133 168 20 157 chr1 108635404 108635749 -173557915 + AluJb SINE Alu 1 298 -4 482 347 36 20 chr1 108636527 108636775 -173556889 + MIR SINE MIR 8 259 -3 7195 209 51 15 chr1 108636804 108637983 -173555681 - L1MC1 LINE L1 0 6613 5478 2228 122 0 3 chr1 108637983 108638294 -173555370 - AluSg SINE Alu 0 310 1 7195 209 51 15 chr1 108638294 108638957 -173554707 - L1MC1 LINE L1 -1135 5478 4840 1937 163 3 0 chr1 108638957 108639258 -173554406 - AluSx SINE Alu -8 304 3 7195 209 51 15 chr1 108639258 108640685 -173552979 - L1MC1 LINE L1 -1773 4840 3220 2182 164 13 22 chr1 108640683 108641135 -173552529 - L1MC1 LINE L1 -5203 1223 776 * 642 170 7 50 chr1 108642335 108642476 -173551188 + FLAM_C SINE Alu 9 143 0 951 191 0 6 chr1 108642488 108642661 -173551003 + AluSg/x SINE Alu 127 298 -12 1304 177 25 92 chr1 108642744 108643060 -173550604 + AluJb SINE Alu 1 295 -17 226 236 36 0 chr1 108643207 108643262 -173550402 - L2 LINE L2 0 3313 3257 554 228 75 48 chr1 108644500 108644834 -173548830 - MER34B LTR ERV1 -10 555 213 1723 167 40 3 chr1 108644911 108645211 -173548453 - AluJb SINE Alu -1 311 1 269 186 46 16 chr1 108645214 108645327 -173548337 - MER34C LTR ERV1 -409 133 17 267 242 116 0 chr1 108645719 108645814 -173547850 - MIR3 SINE MIR -1 207 102 376 345 113 7 chr1 108645929 108646071 -173547593 + MER91A DNA MER1_type 40 196 0 246 317 10 10 chr1 108646431 108646532 -173547132 + (TA)n Simple_repeat Simple_repeat 2 102 0 387 73 0 0 chr1 108646536 108646591 -173547073 + (TG)n Simple_repeat Simple_repeat 2 56 0 306 398 20 36 chr1 108647576 108647772 -173545892 + L2 LINE L2 3063 3255 -17 183 80 0 0 chr1 108647772 108647797 -173545867 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 487 276 8 30 chr1 108649465 108649599 -173544065 - MIR SINE MIR -113 149 19 434 268 177 41 chr1 108649947 108650167 -173543497 + MIR SINE MIR 7 256 -6 10771 38 2 108 chr1 108651579 108653130 -173540534 - SVA Other Other 0 1386 1 204 67 0 0 chr1 108653130 108653160 -173540504 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 260 294 139 26 chr1 108654013 108654207 -173539457 + LTR16C LTR ERVL 196 411 -80 1124 191 9 0 chr1 108654217 108654437 -173539227 - MLT1D LTR MaLR -6 499 278 1828 209 32 45 chr1 108654457 108654964 -173538700 - LTR54 LTR ERV1 -10 500 1 558 176 109 55 chr1 108654964 108655129 -173538535 - MLT1D LTR MaLR -262 243 70 217 338 84 14 chr1 108655283 108655425 -173538239 - L2 LINE L2 -1293 2021 1870 375 302 45 83 chr1 108655582 108655847 -173537817 + L2 LINE L2 3017 3271 -1 359 198 21 42 chr1 108655933 108656029 -173537635 - MER5A DNA MER1_type -91 98 5 479 233 15 134 chr1 108656035 108656237 -173537427 - MER5B DNA MER1_type 0 178 1 424 250 36 43 chr1 108656238 108656378 -173537286 - MIR3 SINE MIR -49 159 21 363 229 0 12 chr1 108657444 108657527 -173536137 - MER5A DNA MER1_type -80 109 28 1553 147 67 27 chr1 108657913 108658263 -173535401 + MER67C LTR ERV1 33 403 -243 356 216 144 0 chr1 108658273 108658412 -173535252 + MER67D LTR ERV1 356 514 0 258 32 0 0 chr1 108658442 108658473 -173535191 + (TATG)n Simple_repeat Simple_repeat 2 32 0 184 217 22 0 chr1 108658565 108658611 -173535053 + L2 LINE L2 2652 2698 -616 2384 162 69 30 chr1 108659693 108660256 -173533408 + MER34C LTR ERV1 1 585 0 326 291 63 8 chr1 108660590 108660717 -173532947 + MIR SINE MIR 117 250 -12 361 214 71 71 chr1 108661518 108661658 -173532006 - MIR SINE MIR -1 261 122 30 66 0 13 chr1 108661874 108661894 -173531770 + AT_rich Low_complexity Low_complexity 1 20 -55 1340 25 0 0 chr1 108661894 108662051 -173531613 + L1PA3 LINE L1 5995 6151 -4 30 66 0 13 chr1 108662051 108662106 -173531558 + AT_rich Low_complexity Low_complexity 20 75 0 2664 14 0 0 chr1 108662168 108662462 -173531202 - AluY SINE Alu -17 294 1 28 38 0 19 chr1 108662500 108662521 -173531143 + AT_rich Low_complexity Low_complexity 1 21 -31 2227 125 0 0 chr1 108662521 108662816 -173530848 - AluSx SINE Alu -17 295 1 28 38 0 19 chr1 108662816 108662847 -173530817 + AT_rich Low_complexity Low_complexity 21 52 0 195 100 0 0 chr1 108663756 108663786 -173529878 + (TTA)n Simple_repeat Simple_repeat 1 30 0 594 170 36 62 chr1 108664196 108664390 -173529274 - MER112 DNA MER1_type -6 254 66 2620 40 0 0 chr1 108665645 108665945 -173527719 + AluY SINE Alu 1 300 -11 277 318 11 0 chr1 108666135 108666223 -173527441 + MIR SINE MIR 25 113 -95 191 303 0 61 chr1 108667096 108667195 -173526469 + L2 LINE L2 3180 3272 0 473 302 63 24 chr1 108667645 108667897 -173525767 + MIR SINE MIR 1 262 0 5458 126 36 8 chr1 108668050 108668974 -173524690 + Tigger3b DNA MER2_type 1 950 -281 1096 95 0 7 chr1 108668979 108669126 -173524538 - AluSg/x SINE Alu -9 301 156 1405 153 19 19 chr1 108669127 108669395 -173524269 + Tigger3b DNA MER2_type 963 1230 -1 213 94 0 0 chr1 108670223 108670255 -173523409 + (CA)n Simple_repeat Simple_repeat 2 33 0 578 306 122 9 chr1 108671229 108671458 -173522206 + MIR SINE MIR 8 262 0 1854 117 85 7 chr1 108672266 108672548 -173521116 + AluSx SINE Alu 1 304 -8 265 280 0 0 chr1 108672649 108672724 -173520940 + MER103 DNA DNA 43 117 -49 2000 153 17 0 chr1 108672995 108673289 -173520375 + AluSx SINE Alu 1 299 -13 293 281 52 59 chr1 108673434 108673569 -173520095 + MIR3 SINE MIR 59 192 -16 1050 321 101 26 chr1 108673569 108674136 -173519528 - L3 LINE CR1 -1 1576 968 532 229 0 25 chr1 108674130 108674252 -173519412 - MIR SINE MIR -22 240 122 * 406 269 235 20 chr1 108674268 108674417 -173519247 - MER5A DNA MER1_type 0 189 9 473 230 30 174 chr1 108674641 108674911 -173518753 - MIR SINE MIR 0 262 32 180 236 146 0 chr1 108675294 108675349 -173518315 - L2 LINE L2 -97 3175 3113 2063 132 0 3 chr1 108676388 108676684 -173516980 - AluSx SINE Alu -16 296 2 22 0 0 0 chr1 108677879 108677901 -173515763 + AT_rich Low_complexity Low_complexity 1 22 0 383 285 0 39 chr1 108678144 108678274 -173515390 + L2 LINE L2 3186 3310 -3 274 298 145 15 chr1 108678287 108678418 -173515246 + MIR SINE MIR 6 153 -109 216 300 67 0 chr1 108679062 108679122 -173514542 - L2 LINE L2 -4 3268 3205 579 227 50 71 chr1 108679537 108679735 -173513929 + MIR SINE MIR 54 247 -15 581 270 6 6 chr1 108681595 108681754 -173511910 - MER58B DNA MER1_type -1 340 182 189 195 0 0 chr1 108681754 108681795 -173511869 + GA-rich Low_complexity Low_complexity 1 41 0 380 281 77 29 chr1 108682399 108682841 -173510823 - L1ME4a LINE L1 -2 6119 5657 329 349 92 23 chr1 108682898 108683116 -173510548 - L1ME4a LINE L1 -2250 5558 5326 2381 87 3 0 chr1 108683264 108683563 -173510101 - AluSx SINE Alu -12 300 1 192 97 0 0 chr1 108683681 108683712 -173509952 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 767 150 8 0 chr1 108684167 108684294 -173509370 + LTR51 LTR ERV1 1 128 -543 269 250 0 0 chr1 108684503 108684555 -173509109 + polypyrimidine Low_complexity Low_complexity 3 54 0 396 318 99 64 chr1 108684594 108685110 -173508554 - L1MB8 LINE L1 -289 5889 5522 384 304 26 10 chr1 108685137 108685416 -173508248 - L1MB8 LINE L1 -704 5538 5255 404 300 145 29 chr1 108685534 108685909 -173507755 - L1MB8 LINE L1 -1087 5059 4631 1637 180 3 11 chr1 108686024 108686337 -173507327 - AluJo SINE Alu 0 311 1 422 320 106 23 chr1 108686395 108686907 -173506757 - L1MB8 LINE L1 -1804 4342 3789 494 316 73 46 chr1 108687420 108688034 -173505630 - L1MB8 LINE L1 -2990 3156 2526 321 309 58 51 chr1 108688036 108688330 -173505334 - L1MB8 LINE L1 -3722 2424 2129 188 307 88 26 chr1 108688445 108688559 -173505105 + MIR SINE MIR 132 252 -10 349 320 70 56 chr1 108688600 108688891 -173504773 - HAL1b LINE L1 -900 448 150 1655 186 3 20 chr1 108688891 108689192 -173504472 + AluJb SINE Alu 5 300 -12 349 320 70 56 chr1 108689192 108689256 -173504408 - HAL1b LINE L1 -1198 150 88 733 299 16 5 chr1 108692165 108692359 -173501305 - MIR SINE MIR -65 197 2 1744 139 63 36 chr1 108693997 108694300 -173499364 + AluJo SINE Alu 1 311 -1 2143 139 0 3 chr1 108694410 108694712 -173498952 + AluSq SINE Alu 2 302 -11 235 234 0 0 chr1 108696256 108696303 -173497361 + (CA)n Simple_repeat Simple_repeat 2 48 0 603 312 52 13 chr1 108697399 108697630 -173496034 - MIR SINE MIR -6 256 17 374 321 103 5 chr1 108698085 108698269 -173495395 + MIR3 SINE MIR 1 202 -6 186 127 18 36 chr1 108699152 108699207 -173494457 + (TA)n Simple_repeat Simple_repeat 2 55 0 333 312 55 55 chr1 108699276 108699334 -173494330 + L1MC4a LINE L1 5674 5731 -2077 2147 130 0 0 chr1 108699334 108699627 -173494037 + AluSc SINE Alu 1 293 -16 333 312 55 55 chr1 108699627 108699860 -173493804 + L1MC4a LINE L1 5730 5965 -1843 2133 132 0 3 chr1 108700026 108700329 -173493335 - AluSx SINE Alu -10 302 1 225 0 0 0 chr1 108700452 108700477 -173493187 + (ATG)n Simple_repeat Simple_repeat 3 27 0 1603 162 7 32 chr1 108700835 108701077 -173492587 + AluJb SINE Alu 1 235 -77 3321 134 12 71 chr1 108701077 108701727 -173491937 - LTR9 LTR ERV1 0 612 1 1603 162 7 32 chr1 108701727 108701793 -173491871 + AluJb SINE Alu 235 301 -11 331 267 0 50 chr1 108701814 108701915 -173491749 + MIR SINE MIR 38 133 -75 2272 57 3 3 chr1 108701993 108702300 -173491364 - AluY SINE Alu 0 307 1 317 286 65 0 chr1 108702303 108702380 -173491284 + L2 LINE L2 3223 3304 -9 276 30 0 0 chr1 108703332 108703365 -173490299 + (TG)n Simple_repeat Simple_repeat 2 34 0 2095 114 19 41 chr1 108704198 108704514 -173489150 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr1 108704630 108704651 -173489013 + AT_rich Low_complexity Low_complexity 1 21 0 207 298 231 16 chr1 108704708 108704829 -173488835 + L2 LINE L2 3126 3272 0 285 392 33 0 chr1 108705267 108705387 -173488277 - L2 LINE L2 -5 3267 3144 661 189 15 30 chr1 108705824 108705956 -173487708 - FLAM_A SINE Alu -3 130 1 600 339 30 71 chr1 108707466 108707832 -173485832 - L2 LINE L2 -7 3265 2915 2935 171 19 66 chr1 108708645 108709101 -173484563 + LTR8 LTR ERV1 1 412 -279 246 32 0 0 chr1 108709101 108709132 -173484532 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2935 171 19 66 chr1 108709132 108709400 -173484264 + LTR8 LTR ERV1 412 691 0 378 308 56 98 chr1 108709684 108709989 -173483675 + L2 LINE L2 2981 3272 0 380 293 45 38 chr1 108710790 108710923 -173482741 - L2 LINE L2 0 3313 3180 2177 119 51 23 chr1 108710982 108711336 -173482328 + THE1B LTR MaLR 1 364 0 11057 97 4 11 chr1 108711336 108712190 -173481474 + THE1B-int LTR MaLR 1 840 -740 5119 24 0 0 chr1 108712190 108712782 -173480882 + L1PA3 LINE L1 5564 6155 0 11057 97 4 11 chr1 108712782 108713518 -173480146 + THE1B-int LTR MaLR 840 1580 0 2048 127 54 25 chr1 108713518 108713872 -173479792 + THE1B LTR MaLR 1 364 0 192 264 75 0 chr1 108714492 108714545 -173479119 - L2 LINE L2 -70 3202 3146 2434 96 11 8 chr1 108715565 108715919 -173477745 + THE1A LTR MaLR 1 355 0 669 200 19 6 chr1 108715965 108716125 -173477539 - L1MA8 LINE L1 -3 6288 6127 1055 148 11 0 chr1 108716125 108716301 -173477363 + L1PB4 LINE L1 5879 6056 -100 1296 122 41 32 chr1 108716308 108716529 -173477135 + MER30 DNA MER1_type 6 228 -2 591 148 10 0 chr1 108716531 108716632 -173477032 + L1PB4 LINE L1 6054 6155 -1 434 125 0 0 chr1 108716639 108716711 -173476953 - L1MA8 LINE L1 -150 6141 6070 402 188 211 31 chr1 108718107 108718235 -173475429 - MIR SINE MIR 0 262 112 248 245 0 64 chr1 108718603 108718697 -173474967 - MIR SINE MIR -1 261 174 279 411 25 41 chr1 108719253 108719496 -173474168 - L2 LINE L2 -61 3211 2973 33 56 0 0 chr1 108719885 108719939 -173473725 + AT_rich Low_complexity Low_complexity 1 54 0 959 181 151 10 chr1 108719961 108720044 -173473620 - AluJb SINE Alu -83 229 159 249 33 0 0 chr1 108720044 108720074 -173473590 + (TTG)n Simple_repeat Simple_repeat 1 30 0 959 181 151 10 chr1 108720074 108720189 -173473475 - AluJb SINE Alu -153 159 3 472 293 14 14 chr1 108720489 108720636 -173473028 + MIR3 SINE MIR 51 197 -11 543 291 107 58 chr1 108720640 108720966 -173472698 - MLT1I LTR MaLR -27 382 41 5266 92 11 7 chr1 108722815 108722840 -173470824 - L1PB2 LINE L1 -2 6149 6126 2262 105 76 15 chr1 108722840 108723183 -173470481 - THE1B LTR MaLR 0 364 1 5266 92 11 7 chr1 108723183 108723906 -173469758 - L1PB2 LINE L1 -25 6126 5398 365 317 81 6 chr1 108725188 108725349 -173468315 + Charlie8 DNA MER1_type 39 211 -2206 318 231 94 69 chr1 108725453 108725613 -173468051 + Charlie8 DNA MER1_type 345 508 -1909 284 264 88 123 chr1 108726027 108726162 -173467502 - MIR SINE MIR -12 250 125 1849 181 3 0 chr1 108726162 108726472 -173467192 + AluJo SINE Alu 1 311 -1 284 264 88 123 chr1 108726472 108726563 -173467101 - MIR SINE MIR -137 125 32 650 279 49 0 chr1 108727410 108727593 -173466071 + MIR SINE MIR 1 192 -70 345 254 182 6 chr1 108729541 108729706 -173463958 - MER117 DNA MER1_type 0 197 4 1620 215 69 51 chr1 108729994 108730446 -173463218 - MLT2C2 LTR ERVL 0 464 5 473 270 135 24 chr1 108731014 108731374 -173462290 + L1ME LINE L1 5378 5786 -380 25 0 0 0 chr1 108731572 108731597 -173462067 + AT_rich Low_complexity Low_complexity 1 25 0 1617 189 0 65 chr1 108731608 108731719 -173461945 + AluJb SINE Alu 6 123 -189 2120 74 88 0 chr1 108731719 108732003 -173461661 - AluY SINE Alu -2 309 1 1617 189 0 65 chr1 108732003 108732214 -173461450 + AluJb SINE Alu 123 307 -5 236 269 0 0 chr1 108732241 108732308 -173461356 + L1MC4 LINE L1 7914 7980 -62 352 282 113 0 chr1 108733620 108733744 -173459920 - L2 LINE L2 -1 3312 3175 1612 181 33 7 chr1 108734067 108734370 -173459294 - AluJb SINE Alu -1 311 1 230 118 0 0 chr1 108735378 108735412 -173458252 + tRNA-Val-GTT tRNA tRNA 2 35 -41 525 192 100 46 chr1 108737257 108737387 -173456277 - MIR SINE MIR -1 261 125 1818 145 19 35 chr1 108737653 108737963 -173455701 - AluJo SINE Alu -7 305 1 276 288 24 65 chr1 108738028 108738198 -173455466 - L1M4 LINE L1 -5362 1180 1018 815 200 56 6 chr1 108838265 108838445 -173355219 + AluJb SINE Alu 123 311 -1 352 282 113 0 chr1 108838768 108838892 -173354772 + L2 LINE L2 3175 3312 -1 236 269 0 0 chr1 108840204 108840271 -173353393 - L1MC4 LINE L1 -62 7980 7914 1111 215 0 0 chr1 108840298 108840498 -173353166 - AluJb SINE Alu -5 307 108 2114 77 87 0 chr1 108840509 108840795 -173352869 + AluY SINE Alu 1 311 0 360 283 146 41 chr1 108840962 108841181 -173352483 - L1ME LINE L1 -375 5789 5548 * 392 210 75 43 chr1 108841172 108841338 -173352326 - L1P2 LINE L1 -617 5537 5366 1620 215 69 51 chr1 108841890 108842342 -173351322 + MLT2C2 LTR ERVL 5 464 0 345 254 182 6 chr1 108842630 108842795 -173350869 + MER117 DNA MER1_type 4 197 0 650 279 49 0 chr1 108844744 108844927 -173348737 - MIR SINE MIR -70 192 1 284 264 88 123 chr1 108845774 108845865 -173347799 + MIR SINE MIR 32 125 -137 1849 181 3 0 chr1 108845865 108846175 -173347489 - AluJo SINE Alu -1 311 1 284 264 88 123 chr1 108846175 108846310 -173347354 + MIR SINE MIR 125 250 -12 318 231 94 69 chr1 108846724 108846884 -173346780 - Charlie8 DNA MER1_type -1909 508 345 365 317 81 6 chr1 108846988 108847149 -173346515 - Charlie8 DNA MER1_type -2206 211 39 5288 91 11 7 chr1 108848431 108849154 -173344510 + L1PB2 LINE L1 5398 6126 -25 2262 105 76 15 chr1 108849154 108849497 -173344167 + THE1B LTR MaLR 1 364 0 5288 91 11 7 chr1 108849497 108849522 -173344142 + L1PB2 LINE L1 6126 6149 -2 959 181 151 10 chr1 108851498 108851613 -173342051 + AluJb SINE Alu 3 100 -212 276 30 0 0 chr1 108851613 108851646 -173342018 + (CAA)n Simple_repeat Simple_repeat 1 33 0 959 181 151 10 chr1 108851646 108851729 -173341935 + AluJb SINE Alu 100 229 -83 33 56 0 0 chr1 108851751 108851805 -173341859 + AT_rich Low_complexity Low_complexity 1 54 0 261 402 25 45 chr1 108852194 108852438 -173341226 + L2 LINE L2 2973 3211 -61 248 245 0 64 chr1 108852994 108853088 -173340576 + MIR SINE MIR 174 261 -1 403 188 211 31 chr1 108853456 108853584 -173340080 + MIR SINE MIR 112 262 0 1006 159 11 0 chr1 108854489 108854665 -173338999 - L1PB4 LINE L1 -100 6056 5879 669 200 19 6 chr1 108854665 108854825 -173338839 + L1MA8 LINE L1 6127 6288 -3 2425 96 11 8 chr1 108854871 108855225 -173338439 - THE1A LTR MaLR 0 355 1 188 264 75 0 chr1 108856245 108856298 -173337366 + L2 LINE L2 3146 3202 -70 2070 130 51 23 chr1 108856918 108857272 -173336392 - THE1B LTR MaLR 0 364 1 11618 99 4 11 chr1 108857272 108858008 -173335656 - THE1B-int LTR MaLR 0 1580 840 5064 27 0 0 chr1 108858008 108858600 -173335064 - L1PA3 LINE L1 0 6155 5564 11618 99 4 11 chr1 108858600 108859454 -173334210 - THE1B-int LTR MaLR -740 840 1 2170 119 51 23 chr1 108859454 108859808 -173333856 - THE1B LTR MaLR 0 364 1 383 293 45 38 chr1 108859867 108860000 -173333664 + L2 LINE L2 3180 3313 0 2925 168 41 12 chr1 108860643 108860895 -173332769 - L1MB1 LINE L1 -332 5836 5593 3289 109 16 35 chr1 108860895 108861410 -173332254 - LTR10B LTR ERV1 0 505 1 2925 168 41 12 chr1 108861410 108861500 -173332164 - L1MB1 LINE L1 -575 5593 5507 279 54 0 0 chr1 108861500 108861537 -173332127 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2925 168 41 12 chr1 108861537 108861760 -173331904 - L1MB1 LINE L1 -661 5507 5254 1350 256 9 28 chr1 108861740 108862165 -173331499 - L1M3de LINE L1 -4781 1110 694 * 189 74 0 0 chr1 108862312 108862339 -173331325 + (TC)n Simple_repeat Simple_repeat 1 27 0 303 355 28 0 chr1 108862615 108862722 -173330942 - L1M3de LINE L1 -5580 1073 964 770 311 34 21 chr1 108862830 108863127 -173330537 - L1M3de LINE L1 -5327 564 1 26 30 0 0 chr1 108863173 108863206 -173330458 + AT_rich Low_complexity Low_complexity 1 33 0 2128 78 0 0 chr1 108863281 108863539 -173330125 - AluY SINE Alu -17 294 37 33 0 0 0 chr1 108863539 108863572 -173330092 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr1 108864093 108864117 -173329547 + AT_rich Low_complexity Low_complexity 1 24 0 268 283 70 53 chr1 108864267 108864454 -173329210 + L1ME LINE L1 5633 5822 -299 622 127 8 8 chr1 108864603 108864721 -173328943 + L1PA7 LINE L1 2848 2965 -3181 11053 88 3 3 chr1 108864721 108867082 -173326582 + L1PA7 LINE L1 3808 6164 0 807 58 0 0 chr1 108867184 108867288 -173326376 + L1PA8 LINE L1 5847 5950 -222 22 0 0 0 chr1 108867564 108867586 -173326078 + AT_rich Low_complexity Low_complexity 1 22 0 238 252 151 47 chr1 108867590 108867848 -173325816 + L1ME4a LINE L1 5725 6009 -112 391 130 73 0 chr1 108868595 108868841 -173324823 + (TA)n Simple_repeat Simple_repeat 1 336 -5 51 31 0 0 chr1 108868841 108868906 -173324758 + AT_rich Low_complexity Low_complexity 1 65 0 391 130 73 0 chr1 108868906 108868913 -173324751 + (TA)n Simple_repeat Simple_repeat 336 341 0 513 301 78 26 chr1 108869311 108869580 -173324084 + L1ME4a LINE L1 5611 5893 -228 205 129 16 81 chr1 108869744 108869806 -173323858 + T-rich Low_complexity Low_complexity 4 61 0 12405 159 32 16 chr1 108870499 108871203 -173322461 + L1MA6 LINE L1 2836 3528 -2772 562 88 0 0 chr1 108871203 108871283 -173322381 + MADE1 DNA Mariner 1 80 0 12405 159 32 16 chr1 108871283 108873973 -173319691 + L1MA6 LINE L1 3528 6297 -3 257 290 80 56 chr1 108876371 108876533 -173317131 + L2 LINE L2 2229 2394 -920 374 38 0 19 chr1 108877393 108877446 -173316218 + (TG)n Simple_repeat Simple_repeat 2 53 0 3510 168 47 6 chr1 108877610 108878277 -173315387 - L1MC1 LINE L1 -17 6316 5623 6397 27 1 0 chr1 108878277 108879021 -173314643 + L1PA4 LINE L1 5401 6152 -3 297 0 0 0 chr1 108879247 108879280 -173314384 + (TG)n Simple_repeat Simple_repeat 2 34 0 1830 97 123 15 chr1 108879459 108879728 -173313936 + AluSx SINE Alu 1 298 -14 221 234 166 33 chr1 108880041 108880169 -173313495 - MIR SINE MIR -69 139 4 346 194 48 81 chr1 108880331 108880455 -173313209 - MIR SINE MIR -29 233 114 2662 158 2 8 chr1 108880517 108880992 -173312672 - L1MA9 LINE L1 -5 6307 5836 2157 147 19 8 chr1 108880994 108881368 -173312296 - L1MA9 LINE L1 -2116 4030 3653 1757 153 63 41 chr1 108881368 108881636 -173312028 + THE1C LTR MaLR 1 281 -94 2529 113 3 22 chr1 108881636 108882007 -173311657 + THE1B LTR MaLR 1 364 0 1757 153 63 41 chr1 108882007 108882105 -173311559 + THE1C LTR MaLR 281 375 0 570 140 75 0 chr1 108882137 108882244 -173311420 + L1 LINE L1 3546 3660 -2486 3584 192 48 57 chr1 108882245 108883297 -173310367 - L1MA9 LINE L1 -2631 3515 2473 697 301 70 45 chr1 108883952 108884341 -173309323 + MER93a LTR ERV1 1 396 -7 871 237 78 108 chr1 108884493 108884982 -173308682 + L1MC4 LINE L1 7358 7831 -211 230 193 18 0 chr1 108885020 108885077 -173308587 + (TA)n Simple_repeat Simple_repeat 1 58 0 1475 161 14 53 chr1 108885143 108885428 -173308236 - AluJo SINE Alu -38 274 1 288 341 39 47 chr1 108885505 108885634 -173308030 - L2 LINE L2 0 3313 3186 27 62 0 0 chr1 108886507 108886555 -173307109 + AT_rich Low_complexity Low_complexity 1 48 0 270 353 67 73 chr1 108887009 108887309 -173306355 + L2 LINE L2 2904 3201 -71 187 261 72 72 chr1 108887368 108887437 -173306227 - MIR SINE MIR -165 97 29 384 179 53 60 chr1 108887796 108887812 -173305852 - L1MA10 LINE L1 -1 6333 6318 2051 213 64 45 chr1 108887812 108888451 -173305213 - L1ME1 LINE L1 -5 7580 6930 877 266 87 25 chr1 108888440 108888902 -173304762 - L1ME1 LINE L1 -4445 3301 2724 * 262 274 94 113 chr1 108888894 108889329 -173304335 + L1PBb LINE L1 11 437 -6413 * 320 363 72 5 chr1 108889945 108890138 -173303526 + L1PBb LINE L1 1000 1205 -5645 289 280 13 0 chr1 108890151 108890226 -173303438 + L1PBb LINE L1 1473 1548 -5301 6174 249 71 19 chr1 108890227 108890735 -173302929 + L1PBb LINE L1 1355 1835 -5014 240 35 0 0 chr1 108890735 108890764 -173302900 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6174 249 71 19 chr1 108890764 108893392 -173300272 + L1PBb LINE L1 1835 4828 -2021 777 346 30 25 chr1 108893393 108893951 -173299713 - L1MEc LINE L1 -5746 650 90 197 345 12 0 chr1 108893991 108894075 -173299589 + MIR SINE MIR 107 191 -71 28 0 0 0 chr1 108894608 108894636 -173299028 + AT_rich Low_complexity Low_complexity 1 28 0 218 308 19 58 chr1 108895072 108895176 -173298488 + MIR SINE MIR 17 116 -92 281 314 20 72 chr1 108895605 108895758 -173297906 + MIR SINE MIR 47 191 -71 298 263 121 30 chr1 108896038 108896137 -173297527 + MIR SINE MIR 34 141 -121 1772 163 154 0 chr1 108896889 108897227 -173296437 + MLT1B LTR MaLR 1 390 0 383 267 31 75 chr1 108897464 108897625 -173296039 + MIR3 SINE MIR 35 188 -20 1883 134 14 14 chr1 108897625 108897916 -173295748 - AluSx SINE Alu -19 293 3 344 286 22 0 chr1 108897978 108898069 -173295595 + MER58 DNA MER1_type 7 99 -242 632 269 112 15 chr1 108898115 108898312 -173295352 - MIR SINE MIR -31 231 16 999 147 23 100 chr1 108898482 108898781 -173294883 + MER58 DNA MER1_type 2145 2420 0 27 49 0 0 chr1 108898918 108898959 -173294705 + AT_rich Low_complexity Low_complexity 1 41 0 10525 208 33 57 chr1 108899318 108903772 -173289892 + L1M2b LINE L1 1 4271 -2937 44060 37 1 3 chr1 108903773 108909940 -173283724 + L1PA3 LINE L1 1 6155 0 923 151 5 21 chr1 108909933 108910119 -173283545 + L1M2b LINE L1 4253 4435 -2773 * 634 108 0 20 chr1 108910120 108910214 -173283450 + L1MA4A LINE L1 5688 5775 -376 258 32 0 0 chr1 108910214 108910245 -173283419 + (TG)n Simple_repeat Simple_repeat 1 31 0 634 108 0 20 chr1 108910245 108910262 -173283402 + L1MA4A LINE L1 5775 5791 -360 203 149 0 43 chr1 108910263 108910310 -173283354 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 3055 125 10 13 chr1 108910310 108910831 -173282833 + L1MA4A LINE L1 5785 6303 0 384 330 113 9 chr1 108911346 108911576 -173282088 - MIR SINE MIR -3 259 6 2204 120 8 41 chr1 108912838 108913205 -173280459 - THE1A LTR MaLR 0 355 1 11812 94 4 1 chr1 108913205 108914781 -173278883 - THE1A-int LTR MaLR 0 1580 1 2487 93 8 8 chr1 108914781 108915136 -173278528 - THE1A LTR MaLR 0 355 1 768 189 131 5 chr1 108916120 108916311 -173277353 + MER20 DNA MER1_type 1 215 -4 188 57 0 57 chr1 108916345 108916380 -173277284 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2458 78 0 0 chr1 108916684 108916990 -173276674 - AluSq SINE Alu -7 306 1 219 305 12 24 chr1 108917076 108917158 -173276506 + G-rich Low_complexity Low_complexity 1 81 0 231 246 188 0 chr1 108918045 108918114 -173275550 - L2 LINE L2 -8 3264 3183 294 288 63 18 chr1 108918132 108918243 -173275421 - MIR SINE MIR -15 247 132 1604 181 31 31 chr1 108919468 108919817 -173273847 + MLT1A2 LTR MaLR 1 349 -25 2427 87 3 3 chr1 108921432 108921744 -173271920 + AluSp SINE Alu 2 313 0 312 399 60 27 chr1 108922575 108922908 -173270756 - L3 LINE CR1 -1200 377 34 184 231 92 31 chr1 108923668 108923733 -173269931 + MIR3 SINE MIR 132 200 -8 350 332 10 25 chr1 108923877 108924073 -173269591 + L2 LINE L2 2303 2495 -819 264 77 0 0 chr1 108924659 108924698 -173268966 + (GA)n Simple_repeat Simple_repeat 2 40 0 277 314 47 64 chr1 108925550 108925722 -173267942 + MIR SINE MIR 19 187 -75 330 302 184 11 chr1 108926579 108926758 -173266906 + MIR SINE MIR 6 215 -47 219 69 0 0 chr1 108926816 108926845 -173266819 + (CAT)n Simple_repeat Simple_repeat 3 31 0 280 306 44 49 chr1 108927577 108927760 -173265904 + L2 LINE L2 2974 3155 -158 817 257 89 100 chr1 108927905 108928348 -173265316 + MER110 LTR ERV1 68 484 0 258 32 0 0 chr1 108928485 108928516 -173265148 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 670 238 166 5 chr1 108928975 108929168 -173264496 - MER58A DNA MER1_type 0 224 1 205 270 60 20 chr1 108929183 108929283 -173264381 + MIR SINE MIR 144 247 -15 * 402 356 75 21 chr1 108929253 108929587 -173264077 - L2 LINE L2 -1391 1923 1572 1147 92 98 0 chr1 108930491 108930654 -173263010 + AluSp SINE Alu 134 312 -1 27 29 0 0 chr1 108932018 108932052 -173261612 + AT_rich Low_complexity Low_complexity 1 34 0 263 113 19 0 chr1 108934425 108934478 -173259186 + (TA)n Simple_repeat Simple_repeat 1 54 0 442 232 10 20 chr1 108935151 108935250 -173258414 - L2 LINE L2 0 3313 3216 228 307 157 68 chr1 108935317 108935890 -173257774 - L2 LINE L2 -2532 782 159 228 313 90 0 chr1 108935964 108936031 -173257633 + MIR SINE MIR 22 94 -168 2232 53 49 11 chr1 108936072 108936356 -173257308 - AluY SINE Alu -16 295 1 877 220 17 12 chr1 108936667 108936840 -173256824 - MER5A DNA MER1_type 0 189 16 408 111 0 0 chr1 108937156 108937219 -173256445 + (CA)n Simple_repeat Simple_repeat 2 64 0 206 307 247 18 chr1 108937508 108937674 -173255990 + MIR SINE MIR 59 262 0 1633 163 57 7 chr1 108939113 108939395 -173254269 + AluJb SINE Alu 3 298 -14 2136 114 7 7 chr1 108939875 108940173 -173253491 + AluSx SINE Alu 1 298 -14 284 248 132 31 chr1 108940972 108941035 -173252629 + L2 LINE L2 3172 3227 -86 511 81 54 0 chr1 108941035 108941109 -173252555 + MADE1 DNA Mariner 1 78 -2 284 248 132 31 chr1 108941109 108941174 -173252490 + L2 LINE L2 3227 3313 0 2102 114 4 0 chr1 108941208 108941513 -173252151 + AluSx SINE Alu 1 306 0 291 289 56 0 chr1 108942029 108942119 -173251545 - MIR SINE MIR -98 164 70 222 185 185 15 chr1 108942970 108943035 -173250629 - MIR SINE MIR -63 199 124 24 0 0 0 chr1 108943418 108943442 -173250222 + AT_rich Low_complexity Low_complexity 1 24 0 230 321 121 14 chr1 108944214 108944354 -173249310 + MIR3 SINE MIR 30 184 -24 295 239 28 42 chr1 108944532 108944603 -173249061 - MER5A DNA MER1_type -108 81 12 327 243 214 12 chr1 108944701 108944874 -173248790 + L1MC5 LINE L1 7717 7924 -37 205 272 78 68 chr1 108946294 108946397 -173247267 - MIR SINE MIR -66 196 93 192 77 0 0 chr1 108949448 108949474 -173244190 + (A)n Simple_repeat Simple_repeat 1 26 0 305 359 132 7 chr1 108950694 108950975 -173242689 + L2 LINE L2 2432 2747 -567 900 125 151 0 chr1 108951027 108951179 -173242485 + MER46A DNA MER2_type 1 175 -61 2195 98 10 10 chr1 108951421 108951727 -173241937 + AluSg SINE Alu 2 307 -3 23 0 0 0 chr1 108952056 108952079 -173241585 + AT_rich Low_complexity Low_complexity 1 23 0 261 208 92 23 chr1 108953135 108953265 -173240399 - L1M4 LINE L1 -2889 3257 3119 1051 181 5 39 chr1 108953403 108953627 -173240037 + AluJb SINE Alu 88 304 0 451 312 94 34 chr1 108953630 108954256 -173239408 - L1M4 LINE L1 -3250 2896 2183 282 106 0 0 chr1 108954292 108954339 -173239325 + (TG)n Simple_repeat Simple_repeat 2 48 0 1485 208 50 55 chr1 108954538 108954922 -173238742 + MLT1B LTR MaLR 4 385 -5 229 194 8 104 chr1 108956912 108957046 -173236618 + GA-rich Low_complexity Low_complexity 5 125 0 189 94 0 0 chr1 108958267 108958299 -173235365 + (CAG)n Simple_repeat Simple_repeat 1 32 0 460 200 0 18 chr1 108959759 108959869 -173233795 - L1MC5 LINE L1 -45 7916 7809 470 202 8 48 chr1 108960819 108960899 -173232765 - Charlie1 DNA MER1_type -5 2756 2681 2595 59 0 0 chr1 108960899 108961206 -173232458 - AluY SINE Alu -4 307 1 470 202 8 48 chr1 108961206 108961249 -173232415 - Charlie1 DNA MER1_type -80 2681 2638 2247 104 0 19 chr1 108961256 108961563 -173232101 - AluSq SINE Alu -12 301 1 374 309 16 24 chr1 108961617 108961743 -173231921 - Charlie1 DNA MER1_type -2617 144 20 24 67 0 0 chr1 108961965 108962010 -173231654 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr1 108962311 108962351 -173231313 + AT_rich Low_complexity Low_complexity 1 40 0 1805 161 3 7 chr1 108962393 108962684 -173230980 - AluJo SINE Alu -20 292 3 22 0 0 0 chr1 108962718 108962740 -173230924 + AT_rich Low_complexity Low_complexity 1 22 0 185 306 144 18 chr1 108963187 108963298 -173230366 - L3b LINE CR1 -119 1464 1340 1907 74 0 4 chr1 108963599 108963841 -173229823 + AluY SINE Alu 60 300 -11 844 172 95 60 chr1 108964244 108964529 -173229135 - L1MC3 LINE L1 -12 7773 7479 2059 131 0 0 chr1 108964714 108964996 -173228668 - AluSx SINE Alu -14 298 17 1421 59 0 0 chr1 108965041 108965211 -173228453 - AluY SINE Alu -11 300 131 1557 159 69 14 chr1 108965227 108965517 -173228147 - MER2 DNA MER2_type -1 344 39 799 163 0 15 chr1 108966830 108966965 -173226699 - FLAM_C SINE Alu 0 133 1 470 280 28 21 chr1 108967130 108967273 -173226391 - MIR SINE MIR 0 262 119 184 322 23 35 chr1 108967320 108967407 -173226257 + L2 LINE L2 1704 1789 -1525 199 274 129 32 chr1 108968462 108968524 -173225140 + L2 LINE L2 3199 3266 -47 2151 106 0 10 chr1 108969465 108969777 -173223887 + AluY SINE Alu 1 309 -2 26 0 0 0 chr1 108970069 108970095 -173223569 + AT_rich Low_complexity Low_complexity 1 26 0 684 266 89 10 chr1 108970663 108970866 -173222798 + MIR SINE MIR 12 230 -32 2362 65 0 19 chr1 108970999 108971309 -173222355 + AluY SINE Alu 1 304 -7 333 228 76 58 chr1 108972476 108972729 -173220935 + L1MC5 LINE L1 6996 7260 -728 877 274 71 34 chr1 108972853 108973416 -173220248 + L1MC5 LINE L1 7298 7881 -80 23 0 0 0 chr1 108973434 108973457 -173220207 + AT_rich Low_complexity Low_complexity 1 23 0 307 333 74 9 chr1 108973637 108973745 -173219919 - MER5B DNA MER1_type 0 178 64 334 279 99 6 chr1 108975108 108975269 -173218395 + L1ME LINE L1 5524 5699 -422 1993 135 0 3 chr1 108975814 108976111 -173217553 + AluSx SINE Alu 1 296 -16 397 267 8 76 chr1 108978741 108978872 -173214792 + MIR SINE MIR 85 206 -56 377 365 109 31 chr1 108981366 108981907 -173211757 - L2 LINE L2 -67 3205 2621 188 304 29 69 chr1 108981943 108982045 -173211619 + MER5C DNA MER1_type 1 98 -226 276 356 19 0 chr1 108982112 108982216 -173211448 - L2 LINE L2 -715 2599 2494 322 329 170 50 chr1 108982481 108983305 -173210359 - L2 LINE L2 -1240 2074 1152 28 29 0 0 chr1 108984944 108984979 -173208685 + AT_rich Low_complexity Low_complexity 1 35 0 200 189 0 0 chr1 108985112 108985149 -173208515 + (CATATA)n Simple_repeat Simple_repeat 3 39 0 506 270 46 11 chr1 108986149 108986323 -173207341 - MER104 DNA Tc2 0 180 1 1104 251 51 17 chr1 108987414 108987994 -173205670 - L1ME3A LINE L1 -5 6165 5436 202 370 112 22 chr1 108988315 108988591 -173205073 - L2 LINE L2 -537 2777 2477 487 233 158 14 chr1 108988994 108989140 -173204524 - FRAM SINE Alu -9 167 1 2251 62 45 0 chr1 108989152 108989441 -173204223 - AluY SINE Alu -9 302 1 242 283 147 62 chr1 108989828 108989989 -173203675 + L2 LINE L2 2930 3109 -204 1958 114 6 41 chr1 108989989 108990305 -173203359 - AluSx SINE Alu -7 305 1 242 283 147 62 chr1 108990305 108990320 -173203344 + L2 LINE L2 3109 3121 -192 1086 165 28 63 chr1 108990417 108990672 -173202992 + L1MA7 LINE L1 5860 6105 -186 982 180 67 6 chr1 108990672 108990850 -173202814 + MER21B LTR ERV1 1 189 -674 1921 128 67 44 chr1 108990852 108991212 -173202452 + MER21A LTR ERV1 538 905 -26 741 152 82 6 chr1 108991229 108991400 -173202264 + L1MA7 LINE L1 6106 6289 -2 22 56 0 0 chr1 108992447 108992483 -173201181 + AT_rich Low_complexity Low_complexity 1 36 0 1684 171 87 13 chr1 108993754 108994064 -173199600 + MER7A DNA MER2_type 1 331 -15 290 308 0 39 chr1 108994810 108994914 -173198750 - L2 LINE L2 0 3272 3173 374 267 58 64 chr1 108996101 108996273 -173197391 - MIR SINE MIR -87 175 5 378 0 0 0 chr1 108997385 108997427 -173196237 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1845 147 7 0 chr1 108997427 108997706 -173195958 - AluSx SINE Alu -31 281 1 290 25 0 25 chr1 108999503 108999543 -173194121 + (CCCCCT)n Simple_repeat Simple_repeat 2 40 0 6251 55 22 71 chr1 108999548 109001397 -173192267 + SVA Other Other 32 1386 0 387 0 0 0 chr1 109001746 109001789 -173191875 + (CA)n Simple_repeat Simple_repeat 2 44 0 3192 250 158 27 chr1 109001950 109002391 -173191273 - L1ME2 LINE L1 -112 6121 5739 2295 95 0 3 chr1 109002391 109002695 -173190969 + AluSc SINE Alu 1 303 -6 3192 250 158 27 chr1 109002695 109002994 -173190670 - L1ME2 LINE L1 -494 5739 5481 1934 119 76 48 chr1 109002994 109003348 -173190316 + THE1B LTR MaLR 1 364 0 3192 250 158 27 chr1 109003348 109004970 -173188694 - L1ME2 LINE L1 -752 5481 3436 1728 241 90 17 chr1 109005264 109006008 -173187656 - L1ME2 LINE L1 -3200 3015 2214 4668 150 45 7 chr1 109006036 109006732 -173186932 - L1MC1 LINE L1 0 6333 5598 2018 118 3 7 chr1 109006732 109007019 -173186645 - AluSp SINE Alu -27 286 1 4668 150 45 7 chr1 109007019 109007175 -173186489 - L1MC1 LINE L1 -735 5598 5449 2435 231 55 32 chr1 109007179 109008567 -173185097 - L1ME1 LINE L1 -44 6122 4697 521 283 99 38 chr1 109008559 109008902 -173184762 - L1ME2 LINE L1 -4278 2118 1755 * 558 268 139 55 chr1 109008939 109009679 -173183985 - L1ME2 LINE L1 -4883 1513 661 305 340 70 39 chr1 109010068 109010327 -173183337 - L1ME2 LINE L1 -6023 373 107 21 0 0 0 chr1 109011745 109011766 -173181898 + AT_rich Low_complexity Low_complexity 1 21 0 772 263 32 21 chr1 109012928 109013114 -173180550 + MER5A DNA MER1_type 2 189 0 380 237 162 46 chr1 109013217 109013390 -173180274 + MIR SINE MIR 60 252 -10 21 0 0 0 chr1 109014466 109014487 -173179177 + AT_rich Low_complexity Low_complexity 1 21 0 272 269 112 10 chr1 109015600 109015797 -173177867 + L1ME LINE L1 4940 5156 -990 896 169 58 0 chr1 109016017 109016189 -173177475 + L1PA16 LINE L1 5968 6149 -17 650 102 19 0 chr1 109016191 109016299 -173177365 + (GGGA)n Simple_repeat Simple_repeat 4 113 0 194 0 0 37 chr1 109016297 109016324 -173177340 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 * 1013 150 12 17 chr1 109016415 109016588 -173177076 - FRAM SINE Alu -12 164 1 605 275 73 71 chr1 109016643 109017040 -173176624 + L1ME LINE L1 5320 5720 -442 2165 116 0 3 chr1 109017040 109017351 -173176313 - AluSg SINE Alu 0 310 1 605 275 73 71 chr1 109017351 109017448 -173176216 + L1ME LINE L1 5720 5815 -347 2097 97 17 0 chr1 109017674 109017962 -173175702 + AluY SINE Alu 1 293 -18 23 0 0 0 chr1 109018799 109018822 -173174842 + AT_rich Low_complexity Low_complexity 1 23 0 682 144 0 0 chr1 109018903 109019007 -173174657 - AluSg/x SINE Alu -21 289 186 1337 125 0 62 chr1 109019007 109019231 -173174433 - AluSg SINE Alu -93 217 8 329 239 188 86 chr1 109019449 109019843 -173173821 + L1MC5 LINE L1 6994 7427 -534 2246 66 35 3 chr1 109019843 109020131 -173173533 - AluY SINE Alu -14 297 1 206 217 0 0 chr1 109020170 109020216 -173173448 + A-rich Low_complexity Low_complexity 4 49 0 250 245 194 19 chr1 109020220 109020375 -173173289 + L1MC5 LINE L1 7614 7795 -166 325 298 91 8 chr1 109020571 109020692 -173172972 + L1ME3A LINE L1 3171 3301 -2845 314 300 126 18 chr1 109020992 109021468 -173172196 + L1ME3A LINE L1 4557 5096 -1050 1659 207 3 10 chr1 109021574 109021888 -173171776 + AluJb SINE Alu 1 312 0 270 254 66 16 chr1 109021977 109022099 -173171565 + L1ME3A LINE L1 5409 5536 -630 315 294 151 57 chr1 109022200 109022445 -173171219 + L1ME3A LINE L1 5683 5950 -220 1203 219 8 87 chr1 109022571 109022960 -173170704 + MLT1A2 LTR MaLR 4 361 -13 731 143 3 8 chr1 109022980 109023117 -173170547 + L1MB2 LINE L1 5769 5907 -264 718 127 6 127 chr1 109023121 109023212 -173170452 - MER46A DNA MER2_type -97 139 73 2194 46 52 46 chr1 109023212 109023517 -173170147 + AluY SINE Alu 1 307 -4 718 127 6 127 chr1 109023517 109023582 -173170082 - MER46A DNA MER2_type -163 73 2 884 158 85 62 chr1 109023582 109023842 -173169822 + L1MB2 LINE L1 5904 6169 -2 320 197 204 15 chr1 109023956 109024093 -173169571 - L1ME4a LINE L1 -40 6081 5919 315 308 96 19 chr1 109024449 109024605 -173169059 - MIR SINE MIR -65 197 30 1773 68 85 0 chr1 109024609 109024845 -173168819 + AluY SINE Alu 47 302 -9 824 206 67 44 chr1 109025781 109025870 -173167794 - MER33 DNA MER1_type -2263 322 236 2103 89 45 0 chr1 109025870 109026161 -173167503 + AluY SINE Alu 1 304 -7 1712 167 24 10 chr1 109026169 109026462 -173167202 + AluJo SINE Alu 14 310 -2 824 206 67 44 chr1 109026462 109026678 -173166986 - MER33 DNA MER1_type -2355 230 1 21 36 0 0 chr1 109026747 109026775 -173166889 + AT_rich Low_complexity Low_complexity 1 28 0 450 282 61 10 chr1 109026990 109027464 -173166200 - L1MEc LINE L1 -4742 1568 998 197 293 111 10 chr1 109027636 109027735 -173165929 - MIR SINE MIR -70 192 84 2198 122 0 25 chr1 109027918 109028238 -173165426 + AluSx SINE Alu 1 312 0 923 243 62 73 chr1 109028345 109028988 -173164676 + L1MC5 LINE L1 7255 7890 -71 743 154 11 104 chr1 109029244 109029426 -173164238 - Tigger2a DNA MER2_type -269 165 1 1672 152 43 4 chr1 109029453 109029729 -173163935 - AluJo SINE Alu -15 297 11 670 204 193 22 chr1 109029806 109030080 -173163584 + MLT1D LTR MaLR 131 451 -54 189 107 0 0 chr1 109030099 109030127 -173163537 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 187 326 71 20 chr1 109030614 109030712 -173162952 - L2 LINE L2 -15 3298 3196 381 282 169 20 chr1 109031671 109031866 -173161798 + L1MC/D LINE L1 5332 5555 -2253 254 157 114 43 chr1 109031952 109032022 -173161642 + L1MC/D LINE L1 5713 5787 -2021 986 265 66 27 chr1 109032115 109032526 -173161138 + L1ME1 LINE L1 20 446 -5950 * 1929 234 73 31 chr1 109032504 109033109 -173160555 + L1ME1 LINE L1 2774 3425 -2790 2166 88 31 3 chr1 109033109 109033403 -173160261 + AluSg SINE Alu 1 302 -8 1929 234 73 31 chr1 109033403 109033628 -173160036 + L1ME1 LINE L1 3425 3639 -2576 2914 220 81 38 chr1 109033643 109033814 -173159850 + L1ME1 LINE L1 4133 4295 -1940 1910 136 18 0 chr1 109033814 109034093 -173159571 + AluSx SINE Alu 1 284 -28 2914 220 81 38 chr1 109034093 109034849 -173158815 + L1ME1 LINE L1 4295 5017 -1218 1726 190 10 0 chr1 109034849 109035138 -173158526 + AluJo SINE Alu 1 292 -20 2914 220 81 38 chr1 109035138 109036227 -173157437 + L1ME1 LINE L1 5017 6230 -5 2130 100 0 51 chr1 109036253 109036399 -173157265 + AluSc SINE Alu 1 124 -185 2275 91 0 0 chr1 109036399 109036696 -173156968 + AluY SINE Alu 1 297 -14 2130 100 0 51 chr1 109036696 109036860 -173156804 + AluSc SINE Alu 124 295 -14 21 0 0 0 chr1 109036926 109036947 -173156717 + AT_rich Low_complexity Low_complexity 1 21 0 2466 68 13 0 chr1 109037031 109037338 -173156326 - AluY SINE Alu 0 311 1 1981 51 8 0 chr1 109037598 109037834 -173155830 + AluY SINE Alu 62 299 -12 1248 34 0 0 chr1 109038276 109038424 -173155240 - L1PA4 LINE L1 -10 6145 5998 2154 97 9 50 chr1 109038571 109038890 -173154774 + AluSx SINE Alu 1 306 -6 354 286 62 9 chr1 109039907 109040019 -173153645 + MIR SINE MIR 27 144 -64 217 302 10 21 chr1 109040973 109041069 -173152595 + C-rich Low_complexity Low_complexity 6 100 0 2396 65 3 0 chr1 109042518 109042811 -173150853 - AluSp SINE Alu -19 294 1 2560 56 7 0 chr1 109042958 109043262 -173150402 + AluSp SINE Alu 1 306 -7 371 307 26 79 chr1 109043804 109043919 -173149745 + MIR SINE MIR 46 145 -117 2235 112 0 0 chr1 109043919 109044223 -173149441 + AluSc SINE Alu 1 304 -5 371 307 26 79 chr1 109044223 109044335 -173149329 + MIR SINE MIR 145 261 -1 927 224 33 8 chr1 109045087 109045328 -173148336 + L1MB8 LINE L1 5923 6169 -9 550 283 33 11 chr1 109045372 109045556 -173148108 - HAL1 LINE L1 -721 1786 1599 679 291 27 29 chr1 109045714 109046123 -173147541 - L1MC4a LINE L1 -1830 5978 5571 280 312 102 0 chr1 109046186 109046372 -173147292 + L1MC/D LINE L1 5254 5458 -2350 1152 279 84 65 chr1 109046436 109047252 -173146412 + HAL1 LINE L1 1599 2435 -72 3002 125 82 43 chr1 109047252 109047835 -173145829 + MER4B LTR ERV1 1 606 -4 1152 279 84 65 chr1 109047835 109047909 -173145755 + HAL1 LINE L1 2435 2506 -1 2084 104 0 14 chr1 109048370 109048648 -173145016 + AluSq SINE Alu 1 274 -39 207 0 0 0 chr1 109048648 109048671 -173144993 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 206 189 426 8 chr1 109049058 109049180 -173144484 + L3 LINE CR1 679 851 -726 2868 102 48 0 chr1 109049186 109049619 -173144045 + L1PA13 LINE L1 5710 6163 0 814 311 47 0 chr1 109049778 109050035 -173143629 - L2 LINE L2 0 3313 3045 233 319 44 0 chr1 109050385 109050476 -173143188 + L3 LINE CR1 969 1063 -514 2344 103 0 0 chr1 109050910 109051210 -173142454 - AluSx SINE Alu -12 300 1 1049 263 96 49 chr1 109051210 109051851 -173141813 + L2 LINE L2 2660 3313 0 1242 302 58 17 chr1 109051978 109052388 -173141276 + L3 LINE CR1 1144 1570 -7 2269 89 0 10 chr1 109052397 109052699 -173140965 + AluSg SINE Alu 1 299 -11 183 100 0 0 chr1 109053162 109053192 -173140472 + (TCTCTG)n Simple_repeat Simple_repeat 5 34 0 2300 96 3 10 chr1 109053417 109053720 -173139944 + AluSp SINE Alu 1 301 -12 987 296 71 41 chr1 109054255 109054304 -173139360 + L2 LINE L2 2833 2879 -434 844 249 61 0 chr1 109054304 109054501 -173139163 + MER63A DNA MER1_type 1 209 -1 987 296 71 41 chr1 109054501 109054918 -173138746 + L2 LINE L2 2879 3313 0 2324 95 0 3 chr1 109054947 109055242 -173138422 + AluSg SINE Alu 1 294 -16 275 232 130 0 chr1 109055256 109055325 -173138339 + L2 LINE L2 3194 3271 -1 279 282 14 0 chr1 109056038 109056109 -173137555 - L2 LINE L2 0 3313 3242 21 89 0 0 chr1 109056161 109056217 -173137447 + AT_rich Low_complexity Low_complexity 1 56 0 443 243 94 112 chr1 109056231 109056498 -173137166 + L2 LINE L2 3052 3313 0 * 672 317 39 19 chr1 109056479 109056791 -173136873 - L2 LINE L2 0 3313 2996 24 67 0 0 chr1 109056871 109056916 -173136748 + AT_rich Low_complexity Low_complexity 1 45 0 2138 111 3 0 chr1 109056928 109057217 -173136447 + AluSp SINE Alu 1 290 -23 218 286 0 0 chr1 109057502 109057565 -173136099 - L2 LINE L2 -295 2977 2915 27 0 0 0 chr1 109058349 109058376 -173135288 + AT_rich Low_complexity Low_complexity 1 27 0 228 135 0 0 chr1 109058448 109058485 -173135179 + (GGA)n Simple_repeat Simple_repeat 3 39 0 1291 272 97 66 chr1 109062130 109062152 -173131512 + L1MEc LINE L1 108 128 -6268 2373 119 13 21 chr1 109062152 109062530 -173131134 - THE1C LTR MaLR 0 375 1 1291 272 97 66 chr1 109062530 109063280 -173130384 + L1MEc LINE L1 128 853 -5543 2040 144 10 0 chr1 109063280 109063585 -173130079 + AluSx SINE Alu 1 308 -4 1291 272 97 66 chr1 109063585 109063596 -173130068 + L1MEc LINE L1 853 862 -5534 2257 106 0 10 chr1 109063596 109063897 -173129767 + AluY SINE Alu 1 298 -13 1291 272 97 66 chr1 109063897 109064542 -173129122 + L1MEc LINE L1 862 1583 -4813 558 180 4 11 chr1 109064550 109064798 -173128866 + AluJb SINE Alu 1 309 -3 693 241 55 51 chr1 109064800 109065015 -173128649 + L1MEc LINE L1 1587 1805 -4591 1319 196 3 107 chr1 109065015 109065361 -173128303 - AluJo SINE Alu -2 310 1 693 241 55 51 chr1 109065361 109065456 -173128208 + L1MEc LINE L1 1805 1898 -4498 579 239 81 88 chr1 109065591 109065654 -173128010 + L1MEc LINE L1 1919 1981 -4415 1942 115 58 4 chr1 109065654 109065932 -173127732 - AluSx SINE Alu -19 293 1 579 239 81 88 chr1 109065932 109066168 -173127496 + L1MEc LINE L1 1981 2219 -4177 2202 78 0 4 chr1 109066168 109066478 -173127186 - AluY SINE Alu 0 309 1 579 239 81 88 chr1 109066478 109066605 -173127059 + L1MEc LINE L1 2219 2345 -4051 41 36 0 0 chr1 109066605 109066660 -173127004 + AT_rich Low_complexity Low_complexity 1 55 0 721 181 0 95 chr1 109066960 109067170 -173126494 + 7SK RNA RNA 1 190 -3 380 226 0 161 chr1 109067490 109067645 -173126019 - MER94 DNA DNA -4 130 1 1199 175 6 8 chr1 109067701 109068013 -173125651 - MLT1A1 LTR MaLR 0 365 1 522 209 30 0 chr1 109068023 109068157 -173125507 - MER3 DNA MER1_type -28 181 44 1083 259 130 32 chr1 109068407 109068906 -173124758 + MLT1H LTR MaLR 2 549 0 2274 78 34 3 chr1 109068966 109069261 -173124403 + AluY SINE Alu 1 304 -7 533 315 97 21 chr1 109069271 109069550 -173124114 - MLT1K LTR MaLR -162 426 127 2266 164 28 84 chr1 109069638 109070173 -173123491 - MLT1D LTR MaLR 0 505 1 230 223 207 25 chr1 109070883 109071004 -173122660 + MIR SINE MIR 88 230 -32 249 254 0 0 chr1 109071046 109071101 -173122563 - L2 LINE L2 -8 3264 3210 436 271 82 74 chr1 109071307 109071373 -173122291 - MLT1K LTR MaLR -155 433 369 4624 75 139 64 chr1 109071373 109071494 -173122170 - pTR5 LTR ERV1 0 2606 2496 2268 54 0 54 chr1 109071494 109071791 -173121873 + AluY SINE Alu 17 297 -14 4624 75 139 64 chr1 109071791 109072450 -173121214 - pTR5 LTR ERV1 -110 2496 1520 436 271 82 74 chr1 109072450 109072614 -173121050 - MLT1K LTR MaLR -219 369 188 279 0 0 0 chr1 109072743 109072774 -173120890 + (CA)n Simple_repeat Simple_repeat 2 32 0 427 312 64 45 chr1 109072879 109073278 -173120386 - MLT1K LTR MaLR -6 582 145 234 247 0 65 chr1 109073360 109073453 -173120211 - L2 LINE L2 0 3313 3227 33 43 0 0 chr1 109073810 109073857 -173119807 + AT_rich Low_complexity Low_complexity 1 47 0 1829 149 15 49 chr1 109074442 109074787 -173118877 + L1MB4 LINE L1 5802 6134 -46 2329 110 0 0 chr1 109074787 109075096 -173118568 - AluSx SINE Alu -3 309 1 1829 149 15 49 chr1 109075096 109075140 -173118524 + L1MB4 LINE L1 6134 6178 -2 711 168 15 0 chr1 109075197 109075334 -173118330 - MER53 DNA DNA 0 189 51 364 225 22 0 chr1 109075336 109075425 -173118239 - MER53 DNA DNA -97 92 2 214 292 123 0 chr1 109075428 109075493 -173118171 - L2 LINE L2 -31 3241 3169 300 322 111 31 chr1 109075921 109076182 -173117482 + L2 LINE L2 2594 2875 -439 342 239 22 109 chr1 109076326 109076556 -173117108 + MER112 DNA MER1_type 19 228 -32 268 119 0 0 chr1 109076593 109076635 -173117029 + MADE1 DNA Mariner 39 80 0 268 208 38 0 chr1 109078154 109078207 -173115457 - L2 LINE L2 0 3313 3259 2208 179 11 39 chr1 109078577 109079041 -173114623 + L1MD3 LINE L1 7528 7978 -17 215 355 91 16 chr1 109079359 109079480 -173114184 - L2 LINE L2 -1 3271 3142 442 258 23 47 chr1 109079485 109079613 -173114051 - L2 LINE L2 -2 3311 3187 1994 128 0 26 chr1 109080531 109080835 -173112829 - AluSx SINE Alu -16 296 1 916 301 83 40 chr1 109081453 109081875 -173111789 - LTR16B LTR ERVL -19 445 6 7123 60 0 0 chr1 109082078 109083031 -173110633 - L1PA6 LINE L1 -3 6151 5199 23 0 0 0 chr1 109083091 109083114 -173110550 + AT_rich Low_complexity Low_complexity 1 23 0 261 246 0 31 chr1 109083249 109083314 -173110350 - L2 LINE L2 0 3313 3251 27 0 0 0 chr1 109083410 109083437 -173110227 + AT_rich Low_complexity Low_complexity 1 27 0 252 0 0 0 chr1 109084325 109084353 -173109311 + (A)n Simple_repeat Simple_repeat 1 28 0 1455 71 10 15 chr1 109084455 109084652 -173109012 + AluY SINE Alu 105 300 -11 11887 164 75 9 chr1 109085426 109087730 -173105934 + L1MC1 LINE L1 9 2466 -3960 * 21607 138 21 14 chr1 109087720 109089905 -173103759 + L1MA3 LINE L1 16 2184 -5381 2214 112 3 0 chr1 109089905 109090199 -173103465 + AluSp SINE Alu 1 295 -18 21607 138 21 14 chr1 109090199 109090987 -173102677 + L1MA3 LINE L1 2184 3020 -4545 2856 113 32 7 chr1 109090987 109091420 -173102244 - MLT2A1 LTR ERVL 0 444 1 21607 138 21 14 chr1 109091420 109091869 -173101795 + L1MA3 LINE L1 3020 3464 -4101 1485 191 41 29 chr1 109091869 109092183 -173101481 + THE1C LTR MaLR 55 372 -3 13705 170 59 17 chr1 109092187 109092565 -173101099 + L1MA3 LINE L1 3483 3844 -3880 234 0 0 0 chr1 109092565 109092591 -173101073 + (TG)n Simple_repeat Simple_repeat 2 27 0 13705 170 59 17 chr1 109092591 109094385 -173099279 + L1MA3 LINE L1 3844 5562 -2162 3419 72 13 30 chr1 109094385 109094846 -173098818 - MLT2A2 LTR ERVL 0 453 1 13705 170 59 17 chr1 109094846 109096739 -173096925 + L1MA3 LINE L1 5562 7724 0 5399 196 46 28 chr1 109096757 109096857 -173096807 + L1MC1 LINE L1 2463 2560 -4053 1980 126 0 20 chr1 109096857 109097184 -173096480 + AluSx SINE Alu 1 321 0 5399 196 46 28 chr1 109097184 109100102 -173093562 + L1MC1 LINE L1 2560 5424 -1189 2059 98 0 7 chr1 109100102 109100376 -173093288 + AluSx SINE Alu 32 303 -9 1986 137 7 0 chr1 109100385 109100663 -173093001 + AluSx SINE Alu 6 285 -27 249 33 0 0 chr1 109100664 109100694 -173092970 + (CA)n Simple_repeat Simple_repeat 2 31 0 5399 196 46 28 chr1 109100694 109101648 -173092016 + L1MC1 LINE L1 5430 6613 0 790 190 98 0 chr1 109102576 109102750 -173090914 - LTR47A LTR ERVL -1 451 261 22 0 0 0 chr1 109102985 109103007 -173090657 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 109103159 109103199 -173090465 + AT_rich Low_complexity Low_complexity 1 40 0 2039 147 7 0 chr1 109103295 109103602 -173090062 - AluSx SINE Alu -3 309 1 324 276 64 32 chr1 109103908 109104064 -173089600 - HAL1b LINE L1 -411 937 777 1510 203 7 4 chr1 109104145 109104421 -173089243 + AluJo SINE Alu 3 279 -33 27 73 0 0 chr1 109104426 109104481 -173089183 + AT_rich Low_complexity Low_complexity 1 55 0 450 375 45 11 chr1 109104775 109104891 -173088773 - HAL1 LINE L1 -585 1922 1811 347 60 0 0 chr1 109104891 109104941 -173088723 - L1PA10 LINE L1 -4 6164 6115 450 375 45 11 chr1 109104941 109105093 -173088571 - HAL1 LINE L1 -696 1811 1645 1573 145 4 8 chr1 109105312 109105547 -173088117 + AluJb SINE Alu 61 294 -18 235 309 0 15 chr1 109105657 109105725 -173087939 + CT-rich Low_complexity Low_complexity 3 69 0 38290 77 9 9 chr1 109105725 109111870 -173081794 - L1PA4 LINE L1 -2 6153 12 543 125 0 0 chr1 109111977 109112057 -173081607 - MADE1 DNA Mariner 0 80 1 297 0 0 0 chr1 109112548 109112581 -173081083 + (CA)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr1 109112891 109112913 -173080751 + (TTG)n Simple_repeat Simple_repeat 2 23 0 265 322 62 13 chr1 109113918 109114086 -173079578 - MIR SINE MIR -46 216 40 454 325 40 0 chr1 109115094 109115245 -173078419 - L2 LINE L2 0 3272 3116 211 271 42 0 chr1 109115240 109115288 -173078376 + L2 LINE L2 3219 3268 -4 * 1757 32 0 9 chr1 109115733 109115951 -173077713 + L1PA5 LINE L1 5939 6154 0 186 191 0 0 chr1 109116082 109116124 -173077540 + (TG)n Simple_repeat Simple_repeat 1 42 0 1725 159 16 25 chr1 109116219 109116404 -173077260 - AluJb SINE Alu 0 312 130 189 0 0 0 chr1 109116404 109116425 -173077239 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1725 159 16 25 chr1 109116425 109116554 -173077110 - AluJb SINE Alu -182 130 1 186 351 0 0 chr1 109116791 109116848 -173076816 - L2 LINE L2 -48 3224 3168 448 289 96 24 chr1 109117406 109117614 -173076050 + MLT1J LTR MaLR 239 461 -50 581 283 33 62 chr1 109119549 109119733 -173073931 - MIR SINE MIR -10 252 75 2327 97 3 0 chr1 109119733 109120032 -173073632 + AluSq SINE Alu 3 302 -11 581 283 33 62 chr1 109120032 109120087 -173073577 - MIR SINE MIR -187 75 20 536 301 10 5 chr1 109120428 109120627 -173073037 + L1ME3A LINE L1 5740 5939 -231 198 0 0 0 chr1 109123007 109123029 -173070635 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 3168 231 68 15 chr1 109123097 109124629 -173069035 - L1MD2 LINE L1 -2 6357 4751 301 211 0 0 chr1 109125568 109125644 -173068020 - L1M4 LINE L1 -1276 4870 4795 317 315 37 0 chr1 109125696 109125804 -173067860 + L1MC4 LINE L1 6614 6725 -1317 236 244 0 0 chr1 109125838 109125883 -173067781 + (CA)n Simple_repeat Simple_repeat 2 46 0 31 26 0 0 chr1 109126009 109126047 -173067617 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr1 109126776 109126810 -173066854 + AT_rich Low_complexity Low_complexity 1 34 0 42 77 0 0 chr1 109126839 109126930 -173066734 + AT_rich Low_complexity Low_complexity 1 91 0 253 313 125 8 chr1 109127987 109128115 -173065549 - MIR SINE MIR -9 253 111 930 201 6 11 chr1 109128116 109128295 -173065369 + MER45A DNA AcHobo 1 178 0 1373 170 21 60 chr1 109129012 109129342 -173064322 + AluJo SINE Alu 12 330 0 236 268 51 87 chr1 109129447 109129585 -173064079 - L2 LINE L2 -1 3271 3139 324 0 0 0 chr1 109129639 109129675 -173063989 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2191 89 0 4 chr1 109129676 109129956 -173063708 - AluSx SINE Alu -33 279 1 1466 232 69 11 chr1 109130715 109131077 -173062587 - LTR40a LTR ERVL -81 438 56 2519 80 0 0 chr1 109131322 109131622 -173062042 + AluSq SINE Alu 1 300 -13 29 0 0 0 chr1 109131992 109132021 -173061643 + AT_rich Low_complexity Low_complexity 1 29 0 2693 249 58 29 chr1 109132361 109133403 -173060261 - L1ME3 LINE L1 -27 6135 5033 2166 109 3 14 chr1 109133403 109133721 -173059943 + AluSx SINE Alu 1 312 0 2693 249 58 29 chr1 109133721 109134141 -173059523 - L1ME3 LINE L1 -1129 5033 4627 22 0 0 0 chr1 109134276 109134298 -173059366 + AT_rich Low_complexity Low_complexity 1 22 0 1368 117 35 9 chr1 109134304 109134534 -173059130 - L1PA15 LINE L1 -2 6163 5928 1503 206 201 11 chr1 109134534 109134922 -173058742 + MLT2B1 LTR ERVL 1 482 -38 234 91 0 0 chr1 109134922 109134955 -173058709 + (CA)n Simple_repeat Simple_repeat 1 33 0 1503 206 201 11 chr1 109134955 109135003 -173058661 + MLT2B1 LTR ERVL 482 520 0 2169 111 0 13 chr1 109135117 109135423 -173058241 + AluSx SINE Alu 7 308 -4 1256 111 5 0 chr1 109135835 109136025 -173057639 - L1PA13 LINE L1 -1 6162 5972 34 24 0 0 chr1 109137513 109137554 -173056110 + AT_rich Low_complexity Low_complexity 1 41 0 1358 193 50 48 chr1 109138563 109138716 -173054948 - MER46B DNA MER2_type -2498 233 202 2574 134 46 5 chr1 109138716 109139127 -173054537 - MSTA LTR MaLR 0 428 1 1358 193 50 48 chr1 109139127 109139330 -173054334 - MER46B DNA MER2_type -2529 202 1 618 139 0 10 chr1 109139336 109139437 -173054227 - AluSg1 SINE Alu -15 297 198 1944 102 29 10 chr1 109139437 109139819 -173053845 + LTR7 LTR ERV1 9 450 0 1537 97 0 5 chr1 109139820 109140026 -173053638 - AluSg1 SINE Alu -104 205 1 956 156 50 6 chr1 109141279 109141459 -173052205 - MSTA LTR MaLR 0 428 241 940 105 15 0 chr1 109141614 109141747 -173051917 + AluSq/x SINE Alu 1 135 -177 412 141 43 22 chr1 109141799 109141891 -173051773 + MER34B LTR ERV1 450 543 -22 * 1264 166 25 17 chr1 109141890 109142131 -173051533 - MSTA LTR MaLR -185 243 1 373 202 34 0 chr1 109142131 109142220 -173051444 + MER39 LTR ERV1 616 707 0 270 288 75 3 chr1 109142226 109142322 -173051342 - MIR SINE MIR -61 147 47 308 381 29 29 chr1 109142373 109142546 -173051118 - MER5B DNA MER1_type 0 178 6 237 288 17 0 chr1 109142730 109142789 -173050875 + MER34B LTR ERV1 65 124 -441 497 206 62 70 chr1 109142912 109143155 -173050509 + MER34B LTR ERV1 322 562 -3 1898 186 38 32 chr1 109143657 109144203 -173049461 + MLT2A2 LTR ERVL 2 554 0 569 276 76 11 chr1 109144203 109144388 -173049276 - MIR SINE MIR -51 211 15 35717 87 9 25 chr1 109145147 109147098 -173046566 + L1PA6 LINE L1 11 1992 -4162 405 161 0 11 chr1 109147098 109147185 -173046479 + AluJ/FRAM SINE Alu 227 312 0 35717 87 9 25 chr1 109147185 109151392 -173042272 + L1PA6 LINE L1 1992 6151 -3 327 272 39 19 chr1 109151426 109151529 -173042135 + MIR SINE MIR 128 232 -30 189 336 58 19 chr1 109151611 109151715 -173041949 + L2 LINE L2 3190 3297 -16 30 45 0 0 chr1 109152321 109152365 -173041299 + AT_rich Low_complexity Low_complexity 1 44 0 40587 35 24 2 chr1 109152735 109158749 -173034915 - L1PA2 LINE L1 -1 6154 1 43 20 0 0 chr1 109158752 109158802 -173034862 + AT_rich Low_complexity Low_complexity 1 50 0 2258 114 0 7 chr1 109159081 109159378 -173034286 + AluSg SINE Alu 2 296 -14 21 0 0 0 chr1 109160496 109160517 -173033147 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 109160938 109160959 -173032705 + AT_rich Low_complexity Low_complexity 1 21 0 385 294 77 24 chr1 109161067 109161237 -173032427 - L2 LINE L2 -17 3296 3118 2165 118 0 0 chr1 109161324 109161612 -173032052 + AluSx SINE Alu 1 288 -24 2460 206 55 2 chr1 109161829 109162393 -173031271 + L1MB5 LINE L1 5581 6174 0 702 245 47 47 chr1 109163281 109163325 -173030339 + L2 LINE L2 3102 3145 -168 1972 154 0 3 chr1 109163325 109163623 -173030041 - AluJb SINE Alu -15 297 1 702 245 47 47 chr1 109163623 109163790 -173029874 + L2 LINE L2 3144 3313 0 27 0 0 0 chr1 109163987 109164014 -173029650 + AT_rich Low_complexity Low_complexity 1 27 0 426 293 52 51 chr1 109164177 109164336 -173029328 + MIR3 SINE MIR 42 200 -8 241 348 43 14 chr1 109166310 109166448 -173027216 - MER5A DNA MER1_type -14 175 34 * 447 313 7 14 chr1 109166326 109166470 -173027194 + MER5A DNA MER1_type 47 189 0 1473 142 12 137 chr1 109166918 109166994 -173026670 + AluJb SINE Alu 1 85 -217 2272 117 0 3 chr1 109166994 109167301 -173026363 - AluSc SINE Alu -3 306 1 1473 142 12 137 chr1 109167301 109167568 -173026096 + AluJb SINE Alu 85 301 -1 1611 183 42 17 chr1 109167587 109167942 -173025722 + MER93b LTR ERV1 10 373 0 1807 185 97 19 chr1 109168242 109168674 -173024990 + MER31B LTR ERV1 1 466 0 5404 205 58 62 chr1 109168718 109170005 -173023659 + MER31B-int LTR ERV1 10 1228 -3708 2064 162 86 5 chr1 109170005 109170399 -173023265 + MSTB LTR MaLR 1 426 0 5404 205 58 62 chr1 109170399 109170856 -173022808 + MER31B-int LTR ERV1 1228 1686 -3250 319 161 90 58 chr1 109170887 109171042 -173022622 + MER31B-int LTR ERV1 1686 1845 -3091 276 141 90 64 chr1 109171046 109171124 -173022540 + MER4-int LTR ERV1 4180 4259 -3861 256 260 10 29 chr1 109171161 109171265 -173022399 + MER4-int LTR ERV1 3833 3934 -2664 2034 130 51 0 chr1 109171304 109171596 -173022068 - AluSx SINE Alu -2 310 4 378 308 56 98 chr1 109171917 109172222 -173021442 - L2 LINE L2 0 3272 2981 2914 172 19 66 chr1 109172506 109172774 -173020890 - LTR8 LTR ERV1 0 691 412 246 32 0 0 chr1 109172774 109172805 -173020859 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2914 172 19 66 chr1 109172805 109173261 -173020403 - LTR8 LTR ERV1 -279 412 1 617 336 30 71 chr1 109174074 109174440 -173019224 + L2 LINE L2 2915 3265 -7 661 189 15 30 chr1 109175911 109176043 -173017621 + FLAM_A SINE Alu 1 130 -3 285 392 33 0 chr1 109176480 109176600 -173017064 + L2 LINE L2 3144 3267 -5 207 298 231 16 chr1 109177038 109177159 -173016505 - L2 LINE L2 0 3272 3126 21 0 0 0 chr1 109177216 109177237 -173016427 + AT_rich Low_complexity Low_complexity 1 21 0 2103 114 19 41 chr1 109177353 109177670 -173015994 - AluSx SINE Alu -2 310 1 317 286 65 0 chr1 109178772 109178849 -173014815 - L2 LINE L2 -9 3304 3223 2284 53 3 3 chr1 109178852 109179159 -173014505 + AluY SINE Alu 1 307 0 331 267 0 50 chr1 109179237 109179338 -173014326 - MIR SINE MIR -75 133 38 1603 162 7 32 chr1 109179359 109179425 -173014239 - AluJb SINE Alu -11 301 235 3278 137 12 71 chr1 109179425 109180075 -173013589 + LTR9 LTR ERV1 1 612 0 1603 162 7 32 chr1 109180075 109180317 -173013347 - AluJb SINE Alu -77 235 1 225 0 0 0 chr1 109180675 109180700 -173012964 + (CAT)n Simple_repeat Simple_repeat 3 27 0 2156 129 0 3 chr1 109180823 109181126 -173012538 + AluSx SINE Alu 1 302 -10 235 234 0 0 chr1 109181784 109181831 -173011833 + (TG)n Simple_repeat Simple_repeat 2 48 0 2081 146 3 3 chr1 109183375 109183677 -173009987 - AluSq SINE Alu -10 303 2 674 114 48 0 chr1 109183795 109183900 -173009764 - FRAM SINE Alu -4 172 63 1342 152 9 0 chr1 109184052 109184262 -173009402 + AluSc SINE Alu 97 308 -1 2307 209 53 36 chr1 109184262 109184926 -173008738 + MER31B-int LTR ERV1 2609 3283 -1653 1333 195 68 41 chr1 109185100 109185438 -173008226 + MER31B-int LTR ERV1 4565 4911 -25 2151 175 63 25 chr1 109185440 109185886 -173007778 + MER31B LTR ERV1 1 463 -3 2513 47 0 3 chr1 109185979 109186277 -173007387 - AluY SINE Alu -14 297 1 857 275 24 0 chr1 109189144 109189355 -173004309 - MIR SINE MIR 0 262 47 257 226 17 2 chr1 109189356 109189415 -173004249 - MIR SINE MIR -58 150 99 1723 174 61 7 chr1 109189455 109189749 -173003915 + AluJb SINE Alu 1 310 -2 185 106 0 149 chr1 109190090 109190137 -173003527 - MER5B DNA MER1_type -25 153 114 194 333 227 0 chr1 109190349 109190490 -173003174 - L3 LINE CR1 -504 1073 901 294 322 35 28 chr1 109190525 109190668 -173002996 - L3 LINE CR1 -752 825 682 259 163 0 0 chr1 109191052 109191095 -173002569 - Alu SINE Alu -258 44 2 216 218 35 0 chr1 109191186 109191273 -173002391 + (TA)n Simple_repeat Simple_repeat 1 90 0 2461 86 0 3 chr1 109191527 109191829 -173001835 - AluSg SINE Alu -9 301 1 1696 156 12 72 chr1 109191914 109192247 -173001417 - 7SLRNA srpRNA srpRNA -4 316 4 266 312 99 35 chr1 109195603 109195744 -172997920 + MLT1I LTR MaLR 98 247 -162 189 107 0 0 chr1 109196479 109196507 -172997157 + (GA)n Simple_repeat Simple_repeat 1 28 0 302 115 19 0 chr1 109197120 109197172 -172996492 + CT-rich Low_complexity Low_complexity 3 55 0 183 323 31 0 chr1 109197205 109197270 -172996394 - L2 LINE L2 -60 3212 3146 693 311 19 5 chr1 109197300 109197512 -172996152 - MIR SINE MIR -43 219 5 436 286 49 27 chr1 109198275 109198460 -172995204 + MER5A DNA MER1_type 1 189 0 4526 148 75 1 chr1 109199925 109200694 -172992970 + LTR1B LTR ERV1 1 826 0 187 241 223 45 chr1 109201162 109201274 -172992390 - L2 LINE L2 0 3313 3182 2182 68 44 0 chr1 109203294 109203588 -172990076 - AluY SINE Alu -4 307 1 2442 53 0 3 chr1 109204087 109204386 -172989278 + AluY SINE Alu 1 298 -13 230 174 43 14 chr1 109206757 109206826 -172986838 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 297 0 0 0 chr1 109206917 109206950 -172986714 + (TG)n Simple_repeat Simple_repeat 2 34 0 324 253 0 42 chr1 109206964 109207059 -172986605 - L1MC4 LINE L1 -1339 6703 6613 580 335 16 0 chr1 109209104 109209295 -172984369 - MIR SINE MIR -51 211 18 329 341 29 36 chr1 109209610 109209748 -172983916 + MIR SINE MIR 3 139 -123 35 71 0 0 chr1 109209892 109209962 -172983702 + AT_rich Low_complexity Low_complexity 1 70 0 888 150 0 0 chr1 109210133 109210260 -172983404 + FLAM_C SINE Alu 1 127 -6 27 0 0 0 chr1 109210264 109210291 -172983373 + AT_rich Low_complexity Low_complexity 1 27 0 2100 134 7 0 chr1 109210597 109210896 -172982768 + AluSp SINE Alu 1 301 -12 445 50 0 0 chr1 109211422 109211482 -172982182 - AluSc SINE Alu -7 302 243 2183 67 50 0 chr1 109211505 109211788 -172981876 - AluSp SINE Alu -12 301 5 2857 198 91 26 chr1 109212634 109213372 -172980292 - LTR48 LTR ERV1 -1 786 1 2384 88 0 0 chr1 109213681 109213975 -172979689 + AluSg SINE Alu 1 294 -16 905 168 0 0 chr1 109213995 109214138 -172979526 + FRAM SINE Alu 1 40 0 1371 233 76 29 chr1 109214213 109214689 -172978975 - MER21B LTR ERV1 -125 738 179 3621 146 22 0 chr1 109214689 109215279 -172978385 - LTR26 LTR ERV1 0 603 1 1371 233 76 29 chr1 109215279 109215366 -172978298 - MER21B LTR ERV1 -684 179 98 356 198 10 83 chr1 109215405 109215501 -172978163 - MER21B LTR ERV1 -767 96 8 585 293 12 18 chr1 109215737 109215904 -172977760 + MIR SINE MIR 17 182 -80 538 278 6 24 chr1 109216196 109216365 -172977299 + MER63A DNA MER1_type 43 208 -2 225 0 0 0 chr1 109216365 109216390 -172977274 + (TG)n Simple_repeat Simple_repeat 2 26 0 211 192 39 0 chr1 109216396 109216448 -172977216 + (TA)n Simple_repeat Simple_repeat 1 54 0 229 263 0 0 chr1 109216786 109216843 -172976821 + L1MEd LINE L1 445 501 -5618 750 238 61 12 chr1 109217241 109217405 -172976259 - MER5A DNA MER1_type -16 173 2 318 282 6 25 chr1 109217410 109217573 -172976091 + L1MEd LINE L1 942 1101 -5018 227 287 22 22 chr1 109217577 109217713 -172975951 + L1MEd LINE L1 1176 1311 -4999 814 164 0 15 chr1 109218754 109218888 -172974776 - FLAM_C SINE Alu 0 133 2 520 341 39 4 chr1 109218963 109219218 -172974446 + L1MEc LINE L1 528 791 -6034 238 285 7 69 chr1 109219772 109219916 -172973748 + L1MEc LINE L1 1046 1180 -5362 1853 145 19 35 chr1 109219981 109220291 -172973373 + AluJo SINE Alu 1 305 -7 520 192 100 46 chr1 109220557 109220687 -172972977 + MIR SINE MIR 125 261 -1 457 130 44 118 chr1 109221595 109221624 -172972040 + L1MB1 LINE L1 6032 6062 -109 500 98 0 24 chr1 109221624 109221706 -172971958 - MADE1 DNA Mariner 0 80 1 457 130 44 118 chr1 109221706 109221825 -172971839 + L1MB1 LINE L1 6062 6169 -2 180 0 0 0 chr1 109221912 109221932 -172971732 + (TA)n Simple_repeat Simple_repeat 1 20 0 1646 151 4 29 chr1 109222244 109222522 -172971142 - AluJb SINE Alu -7 305 35 342 315 169 0 chr1 109223292 109223505 -172970159 - MIR SINE MIR -13 249 1 23 33 0 0 chr1 109223711 109223741 -172969923 + AT_rich Low_complexity Low_complexity 1 30 0 401 141 26 0 chr1 109226021 109226099 -172967565 - L1MD3 LINE L1 0 7995 7916 214 26 79 0 chr1 109226219 109226257 -172967407 + (CACCC)n Simple_repeat Simple_repeat 1 41 0 260 312 0 37 chr1 109226257 109226366 -172967298 + CT-rich Low_complexity Low_complexity 2 106 0 1197 212 26 3 chr1 109226467 109226773 -172966891 - L1MC4a LINE L1 -150 7658 7346 400 282 40 24 chr1 109226826 109226950 -172966714 + L3 LINE CR1 1449 1574 -3 194 269 0 0 chr1 109226955 109227007 -172966657 - L2 LINE L2 0 3313 3262 1480 193 116 31 chr1 109227285 109227753 -172965911 - MLT2B1 LTR ERVL -6 509 3 225 65 0 0 chr1 109228548 109228579 -172965085 + (TG)n Simple_repeat Simple_repeat 2 32 0 197 380 62 39 chr1 109228601 109228809 -172964855 - L2 LINE L2 -557 2757 2545 401 280 132 70 chr1 109229740 109230111 -172963553 - MLT1K LTR MaLR -32 556 163 484 311 76 60 chr1 109230264 109230631 -172963033 - MLT1K LTR MaLR -23 565 193 200 375 83 0 chr1 109232474 109232594 -172961070 + L2 LINE L2 2925 3054 -218 399 392 41 6 chr1 109232821 109232992 -172960672 + L2 LINE L2 3096 3272 0 540 219 95 41 chr1 109233049 109233218 -172960446 + MER104 DNA MER2_type 3 180 0 1054 287 58 7 chr1 109233271 109233699 -172959965 - MLT1J2 LTR MaLR 0 450 1 232 374 126 45 chr1 109233789 109234011 -172959653 - L2 LINE L2 -2 3270 3031 249 211 0 0 chr1 109234495 109234552 -172959112 + (TA)n Simple_repeat Simple_repeat 2 58 0 904 145 0 6 chr1 109234844 109235003 -172958661 + L1P LINE L1 5217 5374 -772 926 106 165 0 chr1 109235110 109235280 -172958384 + LTR17 LTR ERV1 583 780 0 2000 160 13 5 chr1 109235280 109235654 -172958010 - L1PA7 LINE L1 -316 5838 5462 667 182 26 30 chr1 109237273 109237435 -172956229 - MLT1B LTR MaLR 0 390 227 278 107 18 0 chr1 109237464 109237520 -172956144 + (TA)n Simple_repeat Simple_repeat 2 58 0 1524 246 3 20 chr1 109237520 109237895 -172955769 - L1PB4 LINE L1 -6 6150 5785 2207 92 7 0 chr1 109238045 109238348 -172955316 + AluSp SINE Alu 1 305 0 883 181 12 23 chr1 109239220 109239391 -172954273 + MSTD LTR MaLR 226 394 -2 2348 216 52 53 chr1 109239521 109240175 -172953489 + MLT1E1 LTR MaLR 1 653 -1 33 25 0 0 chr1 109240276 109240316 -172953348 + AT_rich Low_complexity Low_complexity 1 40 0 1079 101 12 12 chr1 109240410 109240578 -172953086 - L1PA10 LINE L1 -4 6164 5997 1597 102 61 8 chr1 109242219 109242483 -172951181 + LTR7 LTR ERV1 171 448 -2 3912 259 33 36 chr1 109243358 109243924 -172949740 - L1P LINE L1 -2310 3836 3270 1968 155 7 3 chr1 109243924 109244228 -172949436 - AluJb SINE Alu -3 309 5 3912 259 33 36 chr1 109244228 109245064 -172948600 - L1P LINE L1 -2876 3270 2438 348 43 0 0 chr1 109245366 109245412 -172948252 + (CA)n Simple_repeat Simple_repeat 2 47 0 5333 151 30 18 chr1 109245414 109246319 -172947345 + Tigger4(Zombi) DNA MER2_type 4 919 -1812 1531 261 139 33 chr1 109247032 109247871 -172945793 + L1MC4 LINE L1 6743 7670 -372 274 310 0 0 chr1 109248174 109248245 -172945419 + HAL1 LINE L1 408 478 -2029 281 318 91 0 chr1 109248502 109248612 -172945052 + L2 LINE L2 3153 3272 0 240 147 15 44 chr1 109248687 109248755 -172944909 + (TA)n Simple_repeat Simple_repeat 2 67 0 4190 142 16 7 chr1 109249521 109250218 -172943446 - Tigger4(Zombi) DNA MER2_type -336 2395 1693 1662 119 12 4 chr1 109250222 109250474 -172943190 - AluSq SINE Alu 0 313 60 836 237 110 37 chr1 109250495 109250740 -172942924 + MLT1G LTR MaLR 312 574 -16 1634 192 13 13 chr1 109252104 109252417 -172941247 - MER65C LTR ERV1 -2 459 147 807 183 14 7 chr1 109252567 109252709 -172940955 - MER65C LTR ERV1 -318 143 1 224 224 20 0 chr1 109253068 109253117 -172940547 + CT-rich Low_complexity Low_complexity 5 54 0 608 230 108 20 chr1 109254056 109254260 -172939404 - MER58A DNA MER1_type 0 224 3 5168 84 7 3 chr1 109254499 109255213 -172938451 + L1PA8A LINE L1 5415 6131 0 2978 66 2 5 chr1 109255224 109255617 -172938047 + L1PA6 LINE L1 5762 6153 -1 725 221 48 24 chr1 109255620 109255828 -172937836 + L1M4 LINE L1 4740 4952 -1194 2344 164 26 17 chr1 109255832 109256296 -172937368 + L1MA7 LINE L1 5717 6184 -107 2738 141 59 10 chr1 109256418 109256923 -172936741 + L1MA8 LINE L1 5762 6291 0 496 263 71 53 chr1 109259382 109259663 -172934001 + L1MEd LINE L1 1381 1666 -4864 28 61 0 0 chr1 109259733 109259782 -172933882 + AT_rich Low_complexity Low_complexity 1 49 0 293 278 65 0 chr1 109259866 109259974 -172933690 + HAL1 LINE L1 1561 1675 -832 233 252 24 16 chr1 109260355 109260478 -172933186 + L1MEd LINE L1 2458 2581 -3959 335 331 76 11 chr1 109260694 109260878 -172932786 + MIR SINE MIR 25 220 -42 260 301 65 0 chr1 109261130 109261223 -172932441 - MIR3 SINE MIR -28 180 82 428 188 50 20 chr1 109261283 109261384 -172932280 - MER5A DNA MER1_type -77 112 9 21 0 0 0 chr1 109262007 109262028 -172931636 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 109263636 109263657 -172930007 + AT_rich Low_complexity Low_complexity 1 21 0 2304 108 87 31 chr1 109264844 109265290 -172928374 + MER1A DNA MER1_type 1 529 0 196 333 0 0 chr1 109265468 109265519 -172928145 - L2 LINE L2 -16 3297 3247 2195 112 0 10 chr1 109265940 109266243 -172927421 - AluSq SINE Alu -13 300 1 26 50 0 0 chr1 109266295 109266335 -172927329 + AT_rich Low_complexity Low_complexity 1 40 0 2105 118 126 50 chr1 109266913 109267311 -172926353 - MSTA LTR MaLR 0 428 1 2953 149 15 0 chr1 109267311 109267788 -172925876 - MER67C LTR ERV1 -1 709 226 392 179 32 53 chr1 109267795 109267890 -172925774 - MER67C LTR ERV1 -615 95 3 397 329 65 18 chr1 109268306 109268476 -172925188 - MER5B DNA MER1_type 0 178 1 295 192 64 13 chr1 109269542 109269620 -172924044 - MER103 DNA DNA -62 104 23 275 0 0 28 chr1 109269844 109269880 -172923784 + (TAA)n Simple_repeat Simple_repeat 2 36 0 218 213 262 0 chr1 109270511 109270572 -172923092 - MIR SINE MIR -108 154 78 442 313 33 0 chr1 109270697 109270847 -172922817 - MIR SINE MIR -2 260 106 2070 192 44 64 chr1 109270913 109271429 -172922235 - MLT1D LTR MaLR 0 555 1 206 231 0 0 chr1 109271713 109271752 -172921912 + CT-rich Low_complexity Low_complexity 2 40 0 29 47 0 0 chr1 109271800 109271843 -172921821 + AT_rich Low_complexity Low_complexity 1 43 0 3202 277 178 15 chr1 109272019 109272200 -172921464 - L2 LINE L2 0 3313 3163 315 0 0 0 chr1 109272200 109272235 -172921429 + (TG)n Simple_repeat Simple_repeat 2 36 0 3202 277 178 15 chr1 109272235 109273817 -172919847 - L2 LINE L2 -150 3163 1273 374 301 44 18 chr1 109275098 109275211 -172918453 - L2 LINE L2 -8 3264 3149 1490 211 61 22 chr1 109275233 109275678 -172917986 + MLT1C LTR MaLR 6 467 0 225 0 0 0 chr1 109276501 109276526 -172917138 + (TG)n Simple_repeat Simple_repeat 2 26 0 2220 48 3 52 chr1 109277246 109277556 -172916108 + AluY SINE Alu 1 295 -16 554 40 26 0 chr1 109277556 109277632 -172916032 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 208 305 152 19 chr1 109277710 109277815 -172915849 - L2 LINE L2 0 3313 3195 2093 200 32 4 chr1 109277896 109278362 -172915302 - L1ME2 LINE L1 -9 6155 5677 2548 229 112 16 chr1 109278364 109279336 -172914328 - L1ME2 LINE L1 -886 5260 4196 1333 199 9 36 chr1 109279499 109279527 -172914137 - MER33 DNA MER1_type -2262 323 296 1741 192 10 0 chr1 109279527 109279824 -172913840 + AluJo SINE Alu 1 300 -12 1333 199 9 36 chr1 109279824 109280127 -172913537 - MER33 DNA MER1_type -2289 296 1 677 243 26 103 chr1 109280306 109280578 -172913086 + MIR SINE MIR 11 261 -1 336 48 0 0 chr1 109280591 109280633 -172913031 + (TG)n Simple_repeat Simple_repeat 2 43 0 2887 102 20 16 chr1 109281878 109282319 -172911345 - MLT2A1 LTR ERVL -1 443 1 1837 132 78 0 chr1 109283423 109283704 -172909960 - AluSx SINE Alu -9 303 1 363 44 0 0 chr1 109283833 109283878 -172909786 + (TG)n Simple_repeat Simple_repeat 2 46 0 1332 73 0 11 chr1 109284013 109284192 -172909472 - L1PA6 LINE L1 -7 6147 5971 763 288 18 14 chr1 109284484 109284703 -172908961 - MIR SINE MIR -41 221 2 234 344 46 30 chr1 109284747 109284878 -172908786 + L2 LINE L2 3138 3270 -2 212 368 87 35 chr1 109284966 109285197 -172908467 - L3 LINE CR1 -1119 458 216 1962 176 19 3 chr1 109285989 109286348 -172907316 - MLT1A1 LTR MaLR 0 365 1 449 338 25 0 chr1 109286889 109287049 -172906615 + MIR3 SINE MIR 39 202 -6 428 294 8 0 chr1 109287392 109287518 -172906146 + MIR SINE MIR 71 197 -65 1599 154 37 34 chr1 109287642 109288054 -172905610 + MER93b LTR ERV1 1 373 0 379 351 43 5 chr1 109288573 109288758 -172904906 + L3b LINE CR1 1294 1485 -98 414 0 0 0 chr1 109288791 109288837 -172904827 + (TG)n Simple_repeat Simple_repeat 2 47 0 277 246 14 0 chr1 109289461 109289530 -172904134 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 493 291 121 0 chr1 109290346 109290528 -172903136 - MIR SINE MIR -13 249 46 1142 212 61 53 chr1 109290767 109291178 -172902486 - MLT1C LTR MaLR 0 467 54 618 200 42 0 chr1 109292998 109293118 -172900546 + FRAM SINE Alu 16 140 -36 815 208 66 62 chr1 109295358 109295599 -172898065 - MIR SINE MIR -20 242 1 373 366 121 9 chr1 109295677 109295901 -172897763 - L2 LINE L2 -25 3247 2999 264 216 45 45 chr1 109296339 109296427 -172897237 - Charlie1 DNA MER1_type -1 2760 2673 4159 209 31 21 chr1 109297389 109297602 -172896062 - Charlie1a DNA MER1_type -1306 1455 1246 2350 97 3 0 chr1 109297602 109297913 -172895751 + AluSx SINE Alu 1 312 0 4159 209 31 21 chr1 109297913 109298804 -172894860 - Charlie1a DNA MER1_type -1515 1246 340 1218 187 5 18 chr1 109298812 109299031 -172894633 + AluJo SINE Alu 77 292 -20 1315 192 42 45 chr1 109299054 109299388 -172894276 - Charlie1a DNA MER1_type -1122 333 1 199 338 29 0 chr1 109301019 109301087 -172892577 - MIR3 SINE MIR 0 208 139 26 74 0 0 chr1 109302088 109302142 -172891522 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 109303963 109303985 -172889679 + AT_rich Low_complexity Low_complexity 1 22 0 470 102 0 92 chr1 109304463 109304561 -172889103 - L1PA11 LINE L1 0 6174 6086 2315 62 38 0 chr1 109304611 109304899 -172888765 - AluSq SINE Alu -14 299 1 217 200 31 0 chr1 109305715 109305780 -172887884 + (TA)n Simple_repeat Simple_repeat 2 68 0 198 350 43 0 chr1 109308327 109308444 -172885220 - L2 LINE L2 -1075 2239 2118 492 271 23 15 chr1 109308471 109308604 -172885060 + MIR SINE MIR 113 246 -16 1985 130 20 10 chr1 109310323 109310459 -172883205 + AluSx SINE Alu 1 134 -178 2125 127 0 29 chr1 109310459 109310773 -172882891 + AluSq SINE Alu 1 305 -8 1985 130 20 10 chr1 109310773 109310935 -172882729 + AluSx SINE Alu 134 302 -10 1987 188 30 40 chr1 109311766 109312196 -172881468 + MSTB LTR MaLR 1 426 0 368 258 12 0 chr1 109312424 109312508 -172881156 - MER2 DNA MER2_type -150 89 6 341 285 32 65 chr1 109313133 109313256 -172880408 - L2 LINE L2 -4 3309 3191 650 296 87 41 chr1 109313328 109313673 -172879991 + L3 LINE CR1 1214 1574 -3 232 309 132 0 chr1 109313958 109314026 -172879638 + MIR SINE MIR 65 141 -67 3110 200 66 4 chr1 109314351 109314620 -172879044 + L1MB7 LINE L1 5368 5619 -565 1951 129 4 7 chr1 109314620 109314898 -172878766 + AluSx SINE Alu 35 311 -1 3110 200 66 4 chr1 109314898 109315397 -172878267 + L1MB7 LINE L1 5619 6184 0 226 286 32 48 chr1 109315989 109316052 -172877612 - MIR SINE MIR -150 112 51 206 163 150 75 chr1 109318777 109318857 -172874807 - L2 LINE L2 -1868 1446 1361 189 147 0 0 chr1 109320184 109320218 -172873446 + (CA)n Simple_repeat Simple_repeat 2 35 0 2277 113 3 0 chr1 109320545 109320855 -172872809 - AluSq SINE Alu -2 311 1 321 225 93 70 chr1 109321392 109321521 -172872143 + MIR SINE MIR 112 243 -19 236 310 120 13 chr1 109321964 109322129 -172871535 - MIR SINE MIR -7 201 13 4804 80 34 10 chr1 109322621 109323333 -172870331 - L1PA8A LINE L1 0 6131 5403 2290 135 8 24 chr1 109323362 109323732 -172869932 - THE1B LTR MaLR 0 364 1 1822 187 35 28 chr1 109324618 109325172 -172868492 + MLT2A2 LTR ERVL 1 554 0 2018 118 10 10 chr1 109326232 109326521 -172867143 - AluSx SINE Alu -10 302 14 667 206 14 27 chr1 109326887 109327033 -172866631 - LTR16C LTR ERVL 0 491 348 21 0 0 0 chr1 109328110 109328131 -172865533 + AT_rich Low_complexity Low_complexity 1 21 0 381 263 97 20 chr1 109328467 109328634 -172865030 + MIR SINE MIR 22 205 -40 198 248 330 9 chr1 109329879 109329988 -172863676 + MIR SINE MIR 119 262 0 2343 261 35 38 chr1 109330209 109330914 -172862750 - L2 LINE L2 -483 2831 2129 2819 161 139 41 chr1 109331075 109331716 -172861948 + MER39 LTR ERV1 4 707 0 2709 207 65 83 chr1 109331775 109332692 -172860972 + L1ME1 LINE L1 5254 6154 -12 2184 95 0 32 chr1 109332693 109333008 -172860656 + AluSx SINE Alu 1 305 -7 21 57 0 0 chr1 109333026 109333061 -172860603 + AT_rich Low_complexity Low_complexity 1 35 0 400 364 57 18 chr1 109334208 109334436 -172859228 + MIR SINE MIR 23 259 -3 391 265 94 18 chr1 109334483 109334653 -172859011 - L2 LINE L2 -1020 2294 2112 595 225 145 98 chr1 109336259 109336686 -172856978 - MLT1H LTR MaLR 0 549 103 360 303 79 7 chr1 109336951 109337103 -172856561 + MER112 DNA MER1_type 97 259 -1 265 237 269 0 chr1 109337104 109337197 -172856467 - MIR3 SINE MIR -54 154 37 455 175 0 50 chr1 109337933 109338053 -172855611 - MER33 DNA MER1_type -1 362 249 759 196 30 6 chr1 109338053 109338221 -172855443 - L1MD3 LINE L1 -23 7972 7801 1083 196 15 0 chr1 109338233 109338437 -172855227 - MER33 DNA MER1_type -117 207 1 516 211 59 78 chr1 109338539 109338809 -172854855 + MIR SINE MIR 3 256 -6 371 291 136 0 chr1 109338918 109339028 -172854636 - L2 LINE L2 -10 3303 3179 28 0 0 0 chr1 109339119 109339147 -172854517 + AT_rich Low_complexity Low_complexity 1 28 0 2228 108 0 0 chr1 109339195 109339492 -172854172 + AluSc SINE Alu 1 297 -12 1093 122 2 9 chr1 109340052 109340299 -172853365 + (TTCC)n Simple_repeat Simple_repeat 2 423 0 543 107 0 0 chr1 109340335 109340419 -172853245 + (TTCC)n Simple_repeat Simple_repeat 3 86 0 576 279 17 77 chr1 109340585 109340818 -172852846 + MIR SINE MIR 37 255 -7 669 283 43 17 chr1 109341849 109342082 -172851582 - L2 LINE L2 -868 2446 2208 512 297 50 67 chr1 109343122 109343361 -172850303 + MIR SINE MIR 12 246 -16 834 278 78 0 chr1 109345312 109345542 -172848122 - MIR SINE MIR -6 256 9 2168 115 0 6 chr1 109347039 109347351 -172846313 - AluSg SINE Alu 0 310 1 224 276 11 23 chr1 109348676 109348763 -172844901 + CT-rich Low_complexity Low_complexity 5 90 0 229 299 39 0 chr1 109348934 109349011 -172844653 - Charlie4 DNA MER1_type 0 1961 1882 617 289 93 5 chr1 109349209 109349403 -172844261 - MIR SINE MIR -3 259 49 1010 41 0 0 chr1 109349658 109349780 -172843884 + AluY SINE Alu 179 300 -11 1931 163 17 57 chr1 109352508 109352912 -172840752 - MLT1B LTR MaLR -2 388 1 273 57 0 0 chr1 109354035 109354070 -172839594 + (TA)n Simple_repeat Simple_repeat 2 36 0 399 296 179 15 chr1 109354124 109354320 -172839344 + MIR SINE MIR 8 235 -27 229 313 8 47 chr1 109354363 109354491 -172839173 + CT-rich Low_complexity Low_complexity 3 125 0 3708 190 48 56 chr1 109355404 109356237 -172837427 + L1MCa LINE L1 1 826 -5600 2415 200 58 18 chr1 109356234 109356932 -172836732 + L1MA6 LINE L1 2696 3428 -3420 * 3863 176 11 22 chr1 109356966 109358347 -172835317 + L1MA6 LINE L1 5320 6686 -316 323 162 44 0 chr1 109358398 109358466 -172835198 - L1MCa LINE L1 -5052 1374 1304 * 4931 209 70 41 chr1 109358464 109361036 -172832628 + L1MCa LINE L1 1335 3982 -2444 * 15083 159 33 19 chr1 109361033 109361456 -172832208 + L1M1 LINE L1 12 428 -7137 2060 99 24 3 chr1 109361456 109361749 -172831915 - AluSx SINE Alu -13 299 1 15083 159 33 19 chr1 109361749 109363965 -172829699 + L1M1 LINE L1 428 2688 -4877 14611 147 11 23 chr1 109363938 109366542 -172827122 + L1P LINE L1 3804 6375 -1190 * 4250 143 41 21 chr1 109366539 109367086 -172826578 - L1 LINE L1 -1153 4993 4458 * 1090 30 0 0 chr1 109367086 109367218 -172826446 - L1PA5 LINE L1 0 6154 6023 4250 143 41 21 chr1 109367218 109367254 -172826410 - L1 LINE L1 -1688 4458 4424 189 0 0 0 chr1 109367254 109367275 -172826389 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 4250 143 41 21 chr1 109367275 109367499 -172826165 - L1 LINE L1 -1722 4424 4169 * 6025 146 23 24 chr1 109367496 109367742 -172825922 + L1MA5A LINE L1 5036 5281 -1016 1971 133 10 10 chr1 109367742 109368036 -172825628 - AluSx SINE Alu -18 294 1 6025 146 23 24 chr1 109368036 109369041 -172824623 + L1MA5A LINE L1 5281 6297 0 4570 140 29 36 chr1 109369073 109369936 -172823728 + L1MC1 LINE L1 5461 6317 -16 25 31 0 0 chr1 109369946 109369978 -172823686 + AT_rich Low_complexity Low_complexity 1 32 0 568 256 6 83 chr1 109370721 109370901 -172822763 + MIR SINE MIR 4 169 -93 687 226 6 24 chr1 109372411 109372579 -172821085 - MIR SINE MIR 0 262 98 414 0 0 0 chr1 109373484 109373530 -172820134 + (CA)n Simple_repeat Simple_repeat 2 47 0 366 287 132 0 chr1 109373751 109373887 -172819777 - MIR SINE MIR -56 206 53 2096 86 3 65 chr1 109374192 109374517 -172819147 + AluSc SINE Alu 3 307 -2 231 320 33 25 chr1 109374682 109374804 -172818860 - L2 LINE L2 0 3313 3191 821 217 51 36 chr1 109375032 109375369 -172818295 + MER4C LTR ERV1 169 465 0 230 317 99 20 chr1 109375381 109375482 -172818182 + L2 LINE L2 2245 2353 -961 15594 237 24 28 chr1 109375691 109382675 -172810989 - L1PA15 LINE L1 0 7603 110 1184 254 94 18 chr1 109382745 109383200 -172810464 - MER110A LTR ERV1 0 468 9 619 179 0 9 chr1 109383204 109383310 -172810354 + MLT1C LTR MaLR 358 462 -5 1821 216 44 26 chr1 109384008 109384462 -172809202 - MLT1C LTR MaLR -5 462 1 342 0 0 0 chr1 109385667 109385705 -172807959 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr1 109385726 109385747 -172807917 + AT_rich Low_complexity Low_complexity 1 21 0 506 286 9 9 chr1 109386659 109386771 -172806893 + L2 LINE L2 3150 3261 -11 265 241 0 0 chr1 109387010 109387064 -172806600 - L2 LINE L2 -8 3264 3211 509 285 21 0 chr1 109387502 109387646 -172806018 - L3b LINE CR1 -196 1387 1241 25 0 0 0 chr1 109387937 109387962 -172805702 + AT_rich Low_complexity Low_complexity 1 25 0 2399 164 38 58 chr1 109389345 109389892 -172803772 + L1MB7 LINE L1 5649 6184 0 23 33 0 0 chr1 109389895 109389925 -172803739 + AT_rich Low_complexity Low_complexity 1 30 0 567 308 89 19 chr1 109390237 109390451 -172803213 + MIR SINE MIR 23 251 -11 25 65 0 0 chr1 109390453 109390499 -172803165 + AT_rich Low_complexity Low_complexity 1 46 0 490 320 154 4 chr1 109391979 109392251 -172801413 + L2 LINE L2 2554 2866 -448 253 269 15 22 chr1 109392615 109392631 -172801033 - L1MA10 LINE L1 0 6334 6319 1901 220 71 21 chr1 109392631 109393149 -172800515 - L1ME1 LINE L1 -5 6161 5618 1695 202 35 38 chr1 109393156 109393396 -172800268 - MLT1A2 LTR MaLR 0 374 135 2428 112 22 0 chr1 109393396 109393763 -172799901 + THE1C LTR MaLR 1 375 0 10114 122 38 1 chr1 109393763 109395285 -172798379 + THE1C-int LTR MaLR 1 1579 -1 2816 91 8 0 chr1 109395286 109395658 -172798006 + THE1C LTR MaLR 1 375 0 1695 202 35 38 chr1 109395658 109395786 -172797878 - MLT1A2 LTR MaLR -237 137 4 334 195 81 81 chr1 109395791 109396062 -172797602 - L1ME1 LINE L1 -553 5613 5159 24 0 0 0 chr1 109396295 109396319 -172797345 + AT_rich Low_complexity Low_complexity 1 24 0 185 329 57 0 chr1 109396353 109396423 -172797241 + L2 LINE L2 3177 3250 -22 400 164 15 0 chr1 109396435 109396502 -172797162 - L2 LINE L2 -4 3309 3242 193 343 41 0 chr1 109396552 109396625 -172797039 + L2 LINE L2 3196 3271 -1 443 316 26 0 chr1 109398352 109398507 -172795157 + MIR SINE MIR 104 262 0 226 227 0 61 chr1 109398507 109398573 -172795091 + (TTA)n Simple_repeat Simple_repeat 3 64 0 811 234 43 86 chr1 109398909 109399259 -172794405 + MER46C DNA MER2_type 1 335 -3 1554 157 37 202 chr1 109399371 109399880 -172793784 + MER61D LTR ERV1 1 501 0 234 0 0 0 chr1 109399969 109399995 -172793669 + (T)n Simple_repeat Simple_repeat 1 26 0 237 301 75 11 chr1 109401075 109401168 -172792496 - L2 LINE L2 -12 3301 3203 348 234 124 53 chr1 109401356 109401475 -172792189 - MER102b DNA MER1_type -1107 321 212 633 224 59 36 chr1 109401475 109401694 -172791970 - MER58A DNA MER1_type 0 224 1 348 234 124 53 chr1 109401694 109401783 -172791881 - MER102b DNA MER1_type -1216 212 98 4129 197 43 18 chr1 109403592 109404855 -172788809 + L1MB8 LINE L1 4887 6177 -1 232 291 0 0 chr1 109404878 109404933 -172788731 - L2 LINE L2 -32 3240 3186 595 266 131 9 chr1 109405337 109405551 -172788113 - MIR SINE MIR -11 251 12 200 293 0 40 chr1 109405580 109405655 -172788009 + L2 LINE L2 3201 3272 0 25 0 0 0 chr1 109405869 109405894 -172787770 + AT_rich Low_complexity Low_complexity 1 25 0 262 337 11 0 chr1 109405907 109405996 -172787668 - MIR SINE MIR -6 256 167 854 277 85 0 chr1 109406017 109406252 -172787412 + MIR SINE MIR 7 261 -1 430 256 50 16 chr1 109406275 109406396 -172787268 - MIR SINE MIR -123 139 15 241 270 48 0 chr1 109406543 109406606 -172787058 + L2 LINE L2 3237 3302 -11 249 379 0 23 chr1 109406626 109406758 -172786906 + L2 LINE L2 2531 2659 -655 1939 188 0 6 chr1 109407150 109407486 -172786178 - MLT1A1 LTR MaLR 0 365 32 381 216 0 0 chr1 109407478 109407552 -172786112 - MLT1E2 LTR MaLR -534 92 19 * 739 228 47 38 chr1 109407636 109407847 -172785817 + MLT1K LTR MaLR 374 586 -2 213 231 0 0 chr1 109410006 109410058 -172783606 + (TA)n Simple_repeat Simple_repeat 2 53 0 2252 104 0 0 chr1 109410142 109410431 -172783233 - AluSg SINE Alu -19 291 3 334 227 103 21 chr1 109410658 109410755 -172782909 - MIR SINE MIR -92 170 66 353 313 60 0 chr1 109410882 109411016 -172782648 + MIR SINE MIR 51 192 -70 274 167 22 56 chr1 109411325 109411415 -172782249 - LTR37A LTR ERV1 -33 393 307 318 230 133 52 chr1 109411559 109411694 -172781970 - MIR SINE MIR -65 197 52 551 298 197 8 chr1 109412300 109412656 -172781008 + L2 LINE L2 2890 3312 -1 369 268 45 27 chr1 109412881 109412993 -172780671 - MIR SINE MIR -147 115 2 343 250 47 88 chr1 109413209 109413257 -172780407 + L2 LINE L2 3172 3220 -93 1681 205 5 60 chr1 109413257 109413643 -172780021 + MLT1A1 LTR MaLR 1 365 0 343 250 47 88 chr1 109413643 109413742 -172779922 + L2 LINE L2 3220 3313 0 348 318 23 62 chr1 109413816 109413937 -172779727 + MIR SINE MIR 79 192 -70 1263 247 34 53 chr1 109413937 109414410 -172779254 - MLT2C2 LTR ERVL 0 464 1 348 318 23 62 chr1 109414410 109414464 -172779200 + MIR SINE MIR 192 247 -15 22 70 0 0 chr1 109415786 109415829 -172777835 + AT_rich Low_complexity Low_complexity 1 43 0 234 91 0 0 chr1 109417667 109417700 -172775964 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 27 29 0 0 chr1 109418928 109418962 -172774702 + AT_rich Low_complexity Low_complexity 1 34 0 339 130 0 0 chr1 109419481 109419535 -172774129 + (T)n Simple_repeat Simple_repeat 1 54 0 202 352 19 19 chr1 109422083 109422191 -172771473 + L2 LINE L2 2951 3058 -214 215 347 0 13 chr1 109422224 109422299 -172771365 + CT-rich Low_complexity Low_complexity 6 79 0 234 309 266 5 chr1 109422340 109422547 -172771117 - MIR SINE MIR 0 262 2 21 0 0 0 chr1 109422721 109422742 -172770922 + AT_rich Low_complexity Low_complexity 1 21 0 2144 75 7 0 chr1 109423848 109424152 -172769512 - AluSg SINE Alu 0 306 1 21 0 0 0 chr1 109424155 109424176 -172769488 + AT_rich Low_complexity Low_complexity 1 21 0 227 326 76 15 chr1 109424267 109424399 -172769265 - L3 LINE CR1 -758 819 680 353 195 0 39 chr1 109424407 109424484 -172769180 - Tigger5 DNA MER2_type -2237 86 13 232 207 17 52 chr1 109424545 109424603 -172769061 - Tigger5 DNA MER2_type -2267 56 1 214 327 191 0 chr1 109424811 109424973 -172768691 - L3 LINE CR1 -1192 385 193 213 65 0 0 chr1 109427619 109427650 -172766014 + (T)n Simple_repeat Simple_repeat 1 31 0 670 268 119 4 chr1 109428077 109428312 -172765352 + MIR SINE MIR 1 262 0 468 325 35 75 chr1 109428351 109428606 -172765058 + L2 LINE L2 3016 3260 -12 255 307 57 11 chr1 109428655 109428743 -172764921 + L2 LINE L2 3179 3270 -2 677 217 19 13 chr1 109429581 109429738 -172763926 + L2 LINE L2 2598 2755 -559 * 1017 273 122 23 chr1 109429724 109430109 -172763555 + L2 LINE L2 2890 3312 -1 522 303 66 38 chr1 109430836 109431123 -172762541 + L2 LINE L2 3010 3304 -9 544 248 203 30 chr1 109431280 109431482 -172762182 - MIR SINE MIR -2 260 24 290 353 108 34 chr1 109432064 109432617 -172761047 - L2 LINE L2 -569 2745 2152 195 129 0 0 chr1 109433422 109433453 -172760211 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 235 216 20 0 chr1 109434285 109434336 -172759328 + LTR30 LTR ERV1 1 52 -670 726 140 61 19 chr1 109434348 109434484 -172759180 + LTR12 LTR ERV1 100 233 -481 325 274 17 0 chr1 109434572 109434689 -172758975 + LTR30 LTR ERV1 524 642 -80 660 130 0 0 chr1 109434692 109434792 -172758872 + LTR12 LTR ERV1 615 714 0 1679 205 26 0 chr1 109435407 109435748 -172757916 + L1MD2 LINE L1 6000 6349 -10 207 0 0 0 chr1 109439271 109439294 -172754370 + (A)n Simple_repeat Simple_repeat 1 23 0 282 56 0 0 chr1 109440198 109440234 -172753430 + (TA)n Simple_repeat Simple_repeat 2 37 0 347 0 23 0 chr1 109440255 109440298 -172753366 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr1 109440314 109440334 -172753330 + (TG)n Simple_repeat Simple_repeat 2 21 0 248 220 34 17 chr1 109440452 109440511 -172753153 - L2 LINE L2 -3 3310 3251 180 273 0 0 chr1 109440877 109440921 -172752743 + MIR SINE MIR 170 213 -49 521 330 52 0 chr1 109441457 109441648 -172752016 + MIR SINE MIR 10 210 -52 258 32 0 0 chr1 109442010 109442041 -172751623 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 181 288 58 73 chr1 109442343 109442548 -172751116 - L2 LINE L2 -197 3075 2874 224 288 14 14 chr1 109443060 109443133 -172750531 + GA-rich Low_complexity Low_complexity 4 76 0 247 250 16 0 chr1 109443946 109444010 -172749654 + L3 LINE CR1 1482 1546 -31 1653 206 12 46 chr1 109444061 109444508 -172749156 + MLT2B2 LTR ERVL 1 442 -112 606 248 15 0 chr1 109444512 109444649 -172749015 + Ricksha DNA DNA 735 873 -1173 234 128 106 0 chr1 109444767 109444814 -172748850 + MLT2B2 LTR ERVL 469 520 0 227 281 47 82 chr1 109445352 109445523 -172748141 - MIR SINE MIR -3 259 95 586 281 27 11 chr1 109445982 109446167 -172747497 + MIR3 SINE MIR 3 190 -18 349 226 21 32 chr1 109446813 109446906 -172746758 + MIR SINE MIR 76 167 -95 26 50 0 0 chr1 109447648 109447688 -172745976 + AT_rich Low_complexity Low_complexity 1 40 0 260 399 13 51 chr1 109447982 109448140 -172745524 - L2 LINE L2 0 3272 3121 733 313 86 48 chr1 109448140 109448688 -172744976 + L2 LINE L2 1459 2034 -1280 784 152 8 23 chr1 109448688 109448820 -172744844 + FLAM_C SINE Alu 1 130 -3 733 313 86 48 chr1 109448820 109448879 -172744785 + L2 LINE L2 2034 2089 -1225 997 323 126 17 chr1 109448886 109449589 -172744075 + L2 LINE L2 2533 3312 -1 483 290 81 26 chr1 109449617 109449825 -172743839 + MIR SINE MIR 25 246 -16 21 36 0 0 chr1 109449944 109449972 -172743692 + AT_rich Low_complexity Low_complexity 1 28 0 303 204 23 11 chr1 109451547 109451635 -172742029 - HsTC2 DNA Tc2 -175 1723 1635 261 221 58 12 chr1 109451643 109451729 -172741935 - MER104 DNA Tc2 -88 92 3 268 164 14 68 chr1 109453278 109453351 -172740313 + L1ME4a LINE L1 5852 5920 -201 285 203 14 0 chr1 109453356 109453425 -172740239 + L1ME4a LINE L1 6049 6118 -3 1863 162 3 0 chr1 109454198 109454494 -172739170 + AluJb SINE Alu 7 303 -9 1977 113 13 50 chr1 109454671 109454972 -172738692 + AluSx SINE Alu 3 292 -20 408 320 103 58 chr1 109455402 109455887 -172737777 - L1 LINE L1 -2384 3762 3256 290 319 95 63 chr1 109459041 109459326 -172734338 + L2 LINE L2 3005 3298 -15 186 326 185 33 chr1 109459768 109459952 -172733712 - L2 LINE L2 -185 3087 2876 1464 215 103 6 chr1 109463371 109463701 -172729963 + MLT1A1 LTR MaLR 1 362 -3 204 329 91 41 chr1 109464179 109464398 -172729266 + L2 LINE L2 2824 3053 -219 245 261 52 98 chr1 109464724 109464877 -172728787 - L2 LINE L2 -1 3312 3167 227 192 68 82 chr1 109465733 109465806 -172727858 + L2 LINE L2 3201 3272 0 2147 104 14 7 chr1 109466868 109467165 -172726499 - AluSx SINE Alu -11 301 3 816 156 12 6 chr1 109468464 109468631 -172725033 + CT-rich Low_complexity Low_complexity 1 168 0 225 83 0 0 chr1 109468631 109468667 -172724997 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 308 301 89 0 chr1 109470680 109470826 -172722838 - L1ME LINE L1 -624 5497 5339 22 0 0 0 chr1 109471402 109471424 -172722240 + AT_rich Low_complexity Low_complexity 1 22 0 2269 113 0 3 chr1 109471427 109471729 -172721935 + AluSx SINE Alu 1 301 -11 252 0 0 0 chr1 109471729 109471757 -172721907 + (TA)n Simple_repeat Simple_repeat 2 29 0 476 348 27 11 chr1 109472049 109472233 -172721431 + MIR SINE MIR 10 196 -66 191 271 17 34 chr1 109472284 109472343 -172721321 - L2 LINE L2 -218 3054 2997 28 0 0 0 chr1 109472665 109472693 -172720971 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 109473216 109473238 -172720426 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 109473330 109473353 -172720311 + AT_rich Low_complexity Low_complexity 1 23 0 303 329 86 14 chr1 109473660 109473800 -172719864 - MIR3 SINE MIR -30 178 29 416 268 49 8 chr1 109473961 109474084 -172719580 - MIR SINE MIR -19 243 116 24 0 0 0 chr1 109477037 109477061 -172716603 + AT_rich Low_complexity Low_complexity 1 24 0 4634 233 14 21 chr1 109478214 109479456 -172714208 - L1P LINE L1 -3085 3061 1829 767 264 48 51 chr1 109479456 109479809 -172713855 + MLT1E2 LTR MaLR 275 626 0 218 273 0 0 chr1 109481512 109481556 -172712108 + L2 LINE L2 3215 3258 -14 976 280 104 51 chr1 109481682 109482153 -172711511 + L2 LINE L2 2818 3313 0 180 200 0 0 chr1 109482809 109482854 -172710810 + A-rich Low_complexity Low_complexity 3 47 0 289 268 145 13 chr1 109483276 109483511 -172710153 - L1ME4a LINE L1 -3 6118 5853 23 68 0 0 chr1 109483520 109483564 -172710100 + AT_rich Low_complexity Low_complexity 1 44 0 224 191 29 0 chr1 109486428 109486496 -172707168 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 465 219 81 16 chr1 109486644 109486767 -172706897 + MER94 DNA DNA 2 132 -2 188 65 0 32 chr1 109486871 109486902 -172706762 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1983 106 11 11 chr1 109487422 109487743 -172705921 + AluSc SINE Alu 1 321 0 203 111 0 22 chr1 109488583 109488628 -172705036 + (TG)n Simple_repeat Simple_repeat 2 45 0 2164 124 0 3 chr1 109489612 109489910 -172703754 - AluSx SINE Alu -15 297 1 380 334 111 64 chr1 109489910 109489984 -172703680 + L2 LINE L2 2548 2617 -655 723 273 11 0 chr1 109489984 109490160 -172703504 - MER45A DNA AcHobo 0 178 1 380 334 111 64 chr1 109490160 109490766 -172702898 + L2 LINE L2 2617 3258 -14 189 107 0 0 chr1 109490767 109490795 -172702869 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 243 305 0 67 chr1 109491623 109491728 -172701936 - MIR SINE MIR -59 203 106 2409 89 0 3 chr1 109491749 109492062 -172701602 + AluSq SINE Alu 1 312 -1 411 83 0 0 chr1 109492792 109492852 -172700812 + (CA)n Simple_repeat Simple_repeat 1 60 0 219 228 57 19 chr1 109492856 109493014 -172700650 + (TA)n Simple_repeat Simple_repeat 2 165 0 22 70 0 0 chr1 109493056 109493099 -172700565 + AT_rich Low_complexity Low_complexity 1 43 0 5981 88 13 28 chr1 109493774 109494845 -172698819 + L1PB1 LINE L1 4899 5957 -194 1075 178 202 0 chr1 109494845 109495092 -172698572 + AluSx SINE Alu 1 297 -5 5981 88 13 28 chr1 109495092 109495284 -172698380 + L1PB1 LINE L1 5957 6150 -1 580 226 152 6 chr1 109496255 109496419 -172697245 - MER5A DNA MER1_type -1 188 1 7749 19 1 0 chr1 109496667 109497643 -172696021 + L1PA3 LINE L1 5176 6152 -3 2346 256 98 36 chr1 109498775 109498839 -172694825 + L1ME LINE L1 2 61 -6019 360 0 0 0 chr1 109498839 109498879 -172694785 + (CA)n Simple_repeat Simple_repeat 2 41 0 2346 256 98 36 chr1 109498879 109499921 -172693743 + L1ME LINE L1 61 1163 -4917 218 236 0 14 chr1 109500256 109500328 -172693336 + CT-rich Low_complexity Low_complexity 3 73 0 6429 24 0 0 chr1 109501926 109502670 -172690994 - L1PA3 LINE L1 -3 6152 5409 8483 31 1 1 chr1 109502670 109503702 -172689962 + L1P LINE L1 4328 5359 -787 1122 216 28 111 chr1 109503814 109504212 -172689452 - MLT1A1 LTR MaLR 0 365 1 4973 181 3 0 chr1 109504319 109505220 -172688444 + L1PA13 LINE L1 3681 4584 -1562 1074 76 0 0 chr1 109505227 109505359 -172688305 - AluY SINE Alu -179 132 1 5046 131 37 18 chr1 109505361 109506923 -172686741 + L1PA13 LINE L1 4572 6157 -6 21 0 0 0 chr1 109507285 109507306 -172686358 + AT_rich Low_complexity Low_complexity 1 21 0 235 344 87 10 chr1 109508679 109508874 -172684790 + MIR SINE MIR 49 258 -4 2172 127 0 3 chr1 109509200 109509499 -172684165 - AluSx SINE Alu -13 299 2 477 0 0 0 chr1 109509876 109509929 -172683735 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 460 98 0 0 chr1 109509932 109509993 -172683671 - AluSp/q SINE Alu -33 280 220 203 237 53 53 chr1 109510933 109511009 -172682655 + L2 LINE L2 577 652 -2662 2284 98 3 0 chr1 109511043 109511340 -172682324 - AluSg SINE Alu -12 298 1 188 189 27 0 chr1 109513471 109513508 -172680156 + MIR SINE MIR 108 145 -63 262 220 22 44 chr1 109513508 109513599 -172680065 + L1MC4 LINE L1 6615 6703 -1339 230 266 0 43 chr1 109513607 109513701 -172679963 - L1MC4 LINE L1 -1339 6703 6614 * 278 228 22 43 chr1 109513693 109513785 -172679879 + L1MC4 LINE L1 6614 6703 -1339 232 215 37 65 chr1 109513717 109513824 -172679840 - L1MC4 LINE L1 -1339 6703 6600 * 217 204 23 0 chr1 109513824 109513868 -172679796 + (TA)n Simple_repeat Simple_repeat 1 45 0 1862 230 82 60 chr1 109514184 109514574 -172679090 + L1ME2 LINE L1 5123 5503 -667 2126 113 3 3 chr1 109514574 109514874 -172678790 + AluSg SINE Alu 1 300 -10 1862 230 82 60 chr1 109514874 109515533 -172678131 + L1ME2 LINE L1 5503 6170 0 2152 114 16 0 chr1 109515699 109516007 -172677657 + AluSq SINE Alu 1 313 0 207 139 0 0 chr1 109516222 109516258 -172677406 + (CA)n Simple_repeat Simple_repeat 1 36 0 437 226 10 0 chr1 109518283 109518385 -172675279 + L1MC3 LINE L1 7682 7784 -1 708 280 36 56 chr1 109519825 109519914 -172673750 - MIR SINE MIR -11 251 162 2252 103 63 26 chr1 109519914 109520265 -172673399 + THE1B LTR MaLR 1 364 0 708 280 36 56 chr1 109520265 109520425 -172673239 - MIR SINE MIR -100 162 7 215 283 0 50 chr1 109520859 109520914 -172672750 + CT-rich Low_complexity Low_complexity 1 50 -44 2648 87 5 22 chr1 109520914 109521284 -172672380 + THE1B LTR MaLR 1 364 0 215 283 0 50 chr1 109521284 109521327 -172672337 + CT-rich Low_complexity Low_complexity 50 94 0 231 229 0 28 chr1 109522118 109522149 -172671515 + (TA)n Simple_repeat Simple_repeat 1 31 -75 195 42 0 0 chr1 109522149 109522173 -172671491 + (GA)n Simple_repeat Simple_repeat 2 25 0 231 229 0 28 chr1 109522173 109522250 -172671414 + (TA)n Simple_repeat Simple_repeat 31 106 0 235 117 17 50 chr1 109522252 109522312 -172671352 + L1MC4 LINE L1 6655 6712 -1330 28 48 0 0 chr1 109522351 109522393 -172671271 + AT_rich Low_complexity Low_complexity 1 42 0 367 342 111 68 chr1 109522416 109522858 -172670806 - L2 LINE L2 -1 3271 2811 464 289 0 15 chr1 109523200 109523335 -172670329 + LTR16C LTR ERVL 359 491 0 778 145 15 8 chr1 109524083 109524214 -172669450 - FRAM SINE Alu -25 151 20 21 0 0 0 chr1 109525182 109525203 -172668461 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 109526190 109526213 -172667451 + (T)n Simple_repeat Simple_repeat 1 23 0 307 250 129 26 chr1 109526388 109526504 -172667160 - MIR SINE MIR -17 245 118 303 420 64 20 chr1 109526590 109526885 -172666779 + L2 LINE L2 2879 3186 -86 561 297 79 0 chr1 109526951 109527116 -172666548 + MIR SINE MIR 83 260 -2 302 271 0 0 chr1 109528864 109528912 -172664752 + A-rich Low_complexity Low_complexity 1 48 0 1690 131 40 77 chr1 109528957 109529254 -172664410 - AluJo SINE Alu -14 298 13 228 323 30 90 chr1 109529439 109529606 -172664058 - MIR3 SINE MIR -38 170 14 749 318 121 5 chr1 109529873 109530295 -172663369 + L2 LINE L2 2843 3313 0 466 149 0 0 chr1 109531234 109531308 -172662356 - MSTD LTR MaLR 0 396 323 6759 55 0 1 chr1 109531309 109532151 -172661513 - L1PA6 LINE L1 0 6154 5314 253 125 0 0 chr1 109532146 109532186 -172661478 + L1P3 LINE L1 1685 1724 -4737 * 1195 191 47 100 chr1 109532210 109532571 -172661093 - MSTD LTR MaLR -54 342 1 736 292 102 7 chr1 109532576 109532860 -172660804 - MLT1A2-int LTR MaLR -6 1729 1419 47 73 0 0 chr1 109532881 109532977 -172660687 + AT_rich Low_complexity Low_complexity 1 96 0 509 276 231 0 chr1 109534304 109534529 -172659135 - L1ME2 LINE L1 -36 6128 5852 1078 207 106 0 chr1 109534543 109534770 -172658894 - L1ME2 LINE L1 -486 5678 5428 261 0 0 0 chr1 109536374 109536403 -172657261 + (TG)n Simple_repeat Simple_repeat 2 30 0 306 339 64 50 chr1 109536755 109537053 -172656611 - L2 LINE L2 -1264 2050 1749 5730 243 36 37 chr1 109537373 109538852 -172654812 - MLT1A2-int LTR MaLR -257 1478 1 1407 194 28 77 chr1 109538853 109539245 -172654419 - MLT1A2 LTR MaLR 0 374 2 219 237 216 10 chr1 109539404 109539501 -172654163 + L2 LINE L2 3192 3308 -5 309 314 39 45 chr1 109540208 109540364 -172653300 - L2 LINE L2 -1 3312 3158 2115 175 41 19 chr1 109543532 109543949 -172649715 + MSTB LTR MaLR 1 426 0 568 88 0 0 chr1 109544013 109544093 -172649571 + MADE1 DNA Mariner 1 80 0 181 396 28 22 chr1 109544407 109544589 -172649075 - L2 LINE L2 -367 2947 2765 * 304 355 25 16 chr1 109544578 109544699 -172648965 + L2 LINE L2 2978 3099 -173 261 270 60 92 chr1 109544743 109544928 -172648736 + MIR SINE MIR 6 184 -78 631 326 61 15 chr1 109545247 109545511 -172648153 + L2 LINE L2 2066 2341 -973 316 174 102 102 chr1 109545511 109545609 -172648055 - L1PA16 LINE L1 -1046 5100 5003 * 3144 251 16 25 chr1 109545607 109546008 -172647656 + L1PA16 LINE L1 5090 5493 -673 246 98 0 0 chr1 109546008 109546049 -172647615 + Alu SINE Alu 260 300 -2 3144 251 16 25 chr1 109546049 109546728 -172646936 + L1PA16 LINE L1 5493 6166 0 222 37 0 0 chr1 109546748 109546775 -172646889 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 928 308 111 45 chr1 109546788 109547320 -172646344 + L2 LINE L2 2348 2914 -400 688 174 0 0 chr1 109548358 109548473 -172645191 - L1PA16 LINE L1 -10 6156 6042 263 176 0 0 chr1 109548592 109548643 -172645021 + HAL1 LINE L1 147 197 -2310 1914 119 4 0 chr1 109548839 109549143 -172644521 - AluSx SINE Alu 0 317 13 863 321 132 69 chr1 109549220 109549747 -172643917 + HAL1 LINE L1 528 1020 -1487 3454 142 38 6 chr1 109549747 109550375 -172643289 + L1MA6 LINE L1 5650 6297 -3 863 321 132 69 chr1 109550375 109551025 -172642639 + HAL1 LINE L1 1020 1779 -728 23 0 0 0 chr1 109551833 109551856 -172641808 + AT_rich Low_complexity Low_complexity 1 23 0 2863 140 39 2 chr1 109551860 109552345 -172641319 - L1PA15 LINE L1 -1 6164 5662 255 271 73 10 chr1 109552574 109552670 -172640994 - L1 LINE L1 -1299 4847 4746 354 308 59 55 chr1 109553438 109553675 -172639989 - L1 LINE L1 -1981 4165 3928 267 335 120 70 chr1 109555295 109555579 -172638085 + L2 LINE L2 2680 2977 -337 2456 129 61 19 chr1 109555611 109556022 -172637642 + MSTC LTR MaLR 1 428 0 191 284 63 32 chr1 109556042 109556137 -172637527 + L2 LINE L2 3191 3288 -25 313 353 88 20 chr1 109556175 109556529 -172637135 - L3 LINE CR1 -542 1035 658 317 291 214 21 chr1 109557174 109557463 -172636201 + MARNA DNA Mariner 23 367 -219 354 23 0 0 chr1 109559101 109559144 -172634520 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr1 109559253 109559274 -172634390 + AT_rich Low_complexity Low_complexity 1 21 0 4436 185 35 23 chr1 109560075 109560691 -172632973 - L1ME3 LINE L1 -4 6277 5670 716 52 10 0 chr1 109560691 109560788 -172632876 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 4436 185 35 23 chr1 109560788 109561163 -172632501 - L1ME3 LINE L1 -611 5670 5301 1453 198 12 15 chr1 109561256 109561594 -172632070 - L1 LINE L1 -823 5323 4987 4433 203 26 5 chr1 109561605 109562574 -172631090 + L1 LINE L1 3639 4627 -1519 2130 117 3 25 chr1 109562758 109563074 -172630590 + AluSc SINE Alu 1 309 0 627 139 56 0 chr1 109563159 109563267 -172630397 + L1MA3 LINE L1 6187 6300 -5 23 0 0 0 chr1 109563318 109563341 -172630323 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 109563552 109563574 -172630090 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 109563699 109563720 -172629944 + AT_rich Low_complexity Low_complexity 1 21 0 427 257 9 106 chr1 109563738 109563956 -172629708 + L2 LINE L2 3117 3313 0 2430 65 0 34 chr1 109564625 109564946 -172628718 + AluY SINE Alu 1 310 -1 396 0 0 0 chr1 109565260 109565304 -172628360 + (TA)n Simple_repeat Simple_repeat 1 44 0 348 176 29 0 chr1 109565434 109565502 -172628162 - L1MDa LINE L1 -4564 1976 1907 3478 102 10 0 chr1 109565851 109566363 -172627301 + L1PA13 LINE L1 5647 6163 0 2217 111 29 20 chr1 109567062 109567403 -172626261 - THE1B LTR MaLR -20 344 1 25 0 0 0 chr1 109567436 109567461 -172626203 + AT_rich Low_complexity Low_complexity 1 25 0 7343 210 102 18 chr1 109567719 109569542 -172624122 - L1MDa LINE L1 -4468 2072 96 223 347 74 23 chr1 109571807 109571983 -172621681 - MIR SINE MIR -58 204 20 2066 219 56 105 chr1 109572816 109573672 -172619992 - L1ME3 LINE L1 -878 5268 4455 * 5092 141 2 2 chr1 109573656 109574455 -172619209 - L1PA13 LINE L1 -3 6160 5362 1714 241 68 15 chr1 109574478 109575005 -172618659 - L1ME3 LINE L1 -1687 4459 3905 * 2003 232 68 10 chr1 109574997 109575652 -172618012 + L1ME2 LINE L1 5243 5938 -226 510 278 5 63 chr1 109575771 109575962 -172617702 + L1ME2 LINE L1 5976 6155 -9 4825 161 28 42 chr1 109576217 109576548 -172617116 - L1PB4 LINE L1 0 6156 5822 1942 127 3 10 chr1 109576548 109576856 -172616808 + AluSx SINE Alu 5 310 -2 4825 161 28 42 chr1 109576856 109578091 -172615573 - L1PB4 LINE L1 -334 5822 4612 904 200 144 49 chr1 109579782 109580087 -172613577 - MER46C DNA MER2_type -4 334 1 257 305 37 0 chr1 109580087 109580169 -172613495 - MIR SINE MIR -105 157 73 281 331 30 15 chr1 109580608 109580741 -172612923 + MER5A DNA MER1_type 46 180 -9 357 109 0 0 chr1 109581277 109581332 -172612332 + (CA)n Simple_repeat Simple_repeat 2 56 0 309 0 0 0 chr1 109581379 109581416 -172612248 + L1PA6 LINE L1 6111 6147 -7 22 35 0 0 chr1 109581423 109581452 -172612212 + AT_rich Low_complexity Low_complexity 1 29 0 240 140 180 0 chr1 109583543 109583593 -172610071 - L2 LINE L2 -1 3312 3254 480 339 11 6 chr1 109583599 109583779 -172609885 + L1ME1 LINE L1 5963 6143 -23 210 291 94 8 chr1 109583786 109583903 -172609761 + L3 LINE CR1 1345 1471 -106 776 357 55 18 chr1 109583943 109584380 -172609284 + L2 LINE L2 2818 3270 -2 2552 99 3 46 chr1 109584383 109584729 -172608935 + THE1C LTR MaLR 1 360 -15 243 0 0 0 chr1 109584729 109584756 -172608908 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2029 113 0 0 chr1 109584758 109585032 -172608632 - AluSc SINE Alu -35 274 1 2552 99 3 46 chr1 109585032 109585074 -172608590 + THE1C LTR MaLR 361 375 0 195 363 23 23 chr1 109585216 109585387 -172608277 + L2 LINE L2 2201 2371 -943 363 23 0 0 chr1 109585749 109585793 -172607871 + (GA)n Simple_repeat Simple_repeat 1 44 0 828 100 0 0 chr1 109585799 109585919 -172607745 + (TA)n Simple_repeat Simple_repeat 2 121 0 1600 174 51 14 chr1 109586324 109586506 -172607158 - AluJo SINE Alu -7 305 106 219 36 0 0 chr1 109586506 109586534 -172607130 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1600 174 51 14 chr1 109586534 109586645 -172607019 - AluJo SINE Alu -206 106 1 748 270 10 10 chr1 109586792 109586996 -172606668 - MIR SINE MIR -3 259 56 328 268 203 39 chr1 109588303 109588456 -172605208 - MER5A DNA MER1_type -6 183 6 338 319 80 37 chr1 109589874 109590037 -172603627 + MIR SINE MIR 20 189 -73 331 256 154 26 chr1 109590957 109591113 -172602551 - MIR3 SINE MIR -31 177 2 181 370 65 11 chr1 109591174 109591266 -172602398 - MIR SINE MIR -76 132 36 25 0 0 0 chr1 109591781 109591806 -172601858 + AT_rich Low_complexity Low_complexity 1 25 0 618 12 37 0 chr1 109592113 109592195 -172601469 + L1PA2 LINE L1 6071 6155 0 225 0 0 0 chr1 109592350 109592375 -172601289 + (A)n Simple_repeat Simple_repeat 1 25 0 419 232 30 0 chr1 109593114 109593213 -172600451 + MER94 DNA DNA 4 105 -29 2604 142 24 20 chr1 109593541 109594034 -172599630 - L1MC2 LINE L1 -5 6339 5845 21 57 0 0 chr1 109594145 109594180 -172599484 + AT_rich Low_complexity Low_complexity 1 35 0 254 236 130 41 chr1 109594207 109594330 -172599334 - L1MC4 LINE L1 -326 7716 7583 547 247 96 24 chr1 109594426 109594592 -172599072 - MER45B DNA AcHobo -725 315 138 472 228 103 15 chr1 109594577 109594713 -172598951 - MER21B LTR ERV1 -361 502 355 * 673 309 20 24 chr1 109594886 109595135 -172598529 - MIR SINE MIR -13 249 2 450 0 0 0 chr1 109595195 109595245 -172598419 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 29 chr1 109596518 109596537 -172597127 + AT_rich Low_complexity Low_complexity 1 19 -14 6408 24 0 0 chr1 109596537 109597281 -172596383 - L1PA3 LINE L1 -3 6152 5409 * 8983 21 1 0 chr1 109597280 109599103 -172594561 + L1PA3 LINE L1 4327 6152 -3 23 0 0 29 chr1 109597281 109599117 -172594547 + AT_rich Low_complexity Low_complexity 19 33 0 2382 264 94 30 chr1 109600235 109600299 -172593365 + L1ME LINE L1 2 60 -5918 468 0 0 0 chr1 109600299 109600351 -172593313 + (CA)n Simple_repeat Simple_repeat 2 53 0 2382 264 94 30 chr1 109600351 109601380 -172592284 + L1ME LINE L1 60 1051 -4927 218 236 0 14 chr1 109601728 109601800 -172591864 + CT-rich Low_complexity Low_complexity 3 73 0 794 273 41 36 chr1 109604087 109604307 -172589357 - MIR SINE MIR -2 260 40 2041 116 7 7 chr1 109605524 109605825 -172587839 + AluSx SINE Alu 1 301 -11 2298 95 0 0 chr1 109605943 109606247 -172587417 + AluSx SINE Alu 6 309 -3 572 162 68 26 chr1 109606562 109606679 -172586985 - L1MDa LINE L1 -6405 135 14 24 67 0 0 chr1 109607169 109607214 -172586450 + AT_rich Low_complexity Low_complexity 1 45 0 2123 109 0 20 chr1 109608121 109608424 -172585240 + AluSx SINE Alu 10 306 -6 25 0 0 0 chr1 109608702 109608727 -172584937 + AT_rich Low_complexity Low_complexity 1 25 0 184 50 100 0 chr1 109609163 109609203 -172584461 + (TTAAA)n Simple_repeat Simple_repeat 3 46 0 2133 142 19 87 chr1 109609233 109609704 -172583960 + L1MC1 LINE L1 5887 6325 -8 2148 92 0 71 chr1 109609711 109610048 -172583616 + AluSq SINE Alu 1 313 0 563 318 85 0 chr1 109612500 109612711 -172580953 + MIR SINE MIR 33 261 -1 307 372 55 6 chr1 109614087 109614251 -172579413 - MIR SINE MIR -12 250 79 317 392 39 35 chr1 109614388 109614620 -172579044 + MIR SINE MIR 2 234 -28 396 0 0 0 chr1 109614901 109614945 -172578719 + (TA)n Simple_repeat Simple_repeat 1 44 0 338 267 96 30 chr1 109616251 109616386 -172577278 - MIR SINE MIR -18 244 101 30 83 0 0 chr1 109618006 109618078 -172575586 + AT_rich Low_complexity Low_complexity 1 72 0 300 232 0 0 chr1 109618992 109619117 -172574547 + A-rich Low_complexity Low_complexity 1 125 0 37839 88 10 8 chr1 109669590 109675571 -172518093 - L1PA6 LINE L1 -146 6008 14 1557 173 39 7 chr1 109675573 109675857 -172517807 + L1PB4 LINE L1 5849 6141 -15 4455 179 31 69 chr1 109675865 109677945 -172515719 + L1MA7 LINE L1 4114 6084 -207 968 145 26 67 chr1 109678047 109678316 -172515348 + L1MA7 LINE L1 6034 6291 0 226 301 0 65 chr1 109678664 109678757 -172514907 + L2 LINE L2 3186 3272 0 201 156 0 0 chr1 109678757 109678789 -172514875 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 786 239 42 2 chr1 109679478 109679667 -172513997 - MIR SINE MIR -63 145 3 1615 283 34 3 chr1 109681281 109682041 -172511623 - L1MEc LINE L1 -2457 3758 2938 2201 76 42 0 chr1 109682044 109682332 -172511332 + AluSp SINE Alu 1 300 -13 4562 259 64 31 chr1 109682332 109684248 -172509416 - L1MEc LINE L1 -4087 2309 332 478 243 14 14 chr1 109684273 109684413 -172509251 - L1MEc LINE L1 -6203 193 54 24 0 0 0 chr1 109684555 109684579 -172509085 + AT_rich Low_complexity Low_complexity 1 24 0 383 241 193 30 chr1 109686361 109686527 -172507137 + MIR SINE MIR 60 252 -10 23 0 0 0 chr1 109686539 109686562 -172507102 + AT_rich Low_complexity Low_complexity 1 23 0 294 217 0 0 chr1 109686627 109686696 -172506968 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 245 304 9 62 chr1 109686704 109686816 -172506848 - MER5B DNA MER1_type -72 106 1 378 231 54 54 chr1 109686818 109686948 -172506716 + Charlie4a DNA MER1_type 1 130 -378 2941 151 28 30 chr1 109686983 109687558 -172506106 + MER49 LTR ERV1 204 777 -146 755 176 49 0 chr1 109687584 109687726 -172505938 + MER49 LTR ERV1 691 839 -84 2290 106 0 3 chr1 109687776 109688077 -172505587 - AluSq SINE Alu -13 300 1 1171 205 136 6 chr1 109688106 109688437 -172505227 + Charlie4a DNA MER1_type 132 505 -3 248 278 0 0 chr1 109688985 109689039 -172504625 + polypyrimidine Low_complexity Low_complexity 2 55 0 270 298 135 10 chr1 109690011 109690115 -172503549 - L2 LINE L2 -5 3308 3192 832 199 6 28 chr1 109690203 109690384 -172503280 - MER69A DNA AcHobo 0 177 1 7731 99 19 2 chr1 109692204 109693279 -172500385 + HERVL-A2 LTR ERVL 4561 5654 0 1745 181 69 41 chr1 109693279 109693826 -172499838 + MLT2A2 LTR ERVL 1 554 0 28 29 0 0 chr1 109693899 109693934 -172499730 + AT_rich Low_complexity Low_complexity 1 35 0 260 276 7 117 chr1 109694023 109694168 -172499496 + L2 LINE L2 3139 3267 -5 561 317 157 36 chr1 109694329 109694484 -172499180 + L2 LINE L2 2905 3040 -273 1703 146 103 0 chr1 109694484 109694765 -172498899 + AluSx SINE Alu 1 310 -2 561 317 157 36 chr1 109694765 109694972 -172498692 + L2 LINE L2 3040 3311 -2 224 282 0 59 chr1 109694998 109695083 -172498581 + MIR SINE MIR 110 189 -73 35 0 0 0 chr1 109695401 109695436 -172498228 + AT_rich Low_complexity Low_complexity 1 35 0 194 250 75 38 chr1 109695888 109695968 -172497696 + L2 LINE L2 3188 3270 -2 183 42 0 0 chr1 109698130 109698154 -172495510 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 2160 113 17 0 chr1 109698934 109699227 -172494437 - AluSx SINE Alu -14 298 1 305 354 47 16 chr1 109699700 109699892 -172493772 + L2 LINE L2 2284 2481 -833 23 0 0 0 chr1 109700280 109700303 -172493361 + AT_rich Low_complexity Low_complexity 1 23 0 324 345 17 4 chr1 109700374 109700554 -172493110 - L1MC/D LINE L1 -488 5633 5499 248 325 108 0 chr1 109700802 109700959 -172492705 - LTR33 LTR ERVL -347 174 1 443 358 25 50 chr1 109701067 109701349 -172492315 + L2 LINE L2 2628 2902 -412 305 359 20 86 chr1 109701381 109701682 -172491982 + L2 LINE L2 2943 3223 -49 196 312 112 24 chr1 109701675 109701800 -172491864 + MIR SINE MIR 23 144 -64 * 190 0 67 0 chr1 109702204 109702234 -172491430 + (CAA)n Simple_repeat Simple_repeat 2 33 0 284 302 28 9 chr1 109702269 109702375 -172491289 + L2 LINE L2 3206 3313 0 28 29 0 0 chr1 109702927 109702962 -172490702 + AT_rich Low_complexity Low_complexity 1 35 0 469 350 36 78 chr1 109703423 109703962 -172489702 - L2 LINE L2 -18 3254 2752 213 237 282 23 chr1 109708878 109709009 -172484655 - MIR3 SINE MIR -1 207 43 22 56 0 0 chr1 109709695 109709731 -172483933 + AT_rich Low_complexity Low_complexity 1 36 0 453 317 36 12 chr1 109710280 109710473 -172483191 + MIR SINE MIR 35 230 -32 641 152 0 0 chr1 109711264 109711363 -172482301 + AluSg/x SINE Alu 198 296 -16 1594 130 7 44 chr1 109711866 109712136 -172481528 - AluJb SINE Alu -32 280 21 230 197 56 0 chr1 109712327 109712398 -172481266 + (TA)n Simple_repeat Simple_repeat 1 75 0 240 211 0 0 chr1 109712468 109712525 -172481139 + A-rich Low_complexity Low_complexity 1 57 0 239 200 14 14 chr1 109713479 109713549 -172480115 + A-rich Low_complexity Low_complexity 2 71 0 1810 122 26 4 chr1 109713734 109714004 -172479660 - AluSx SINE Alu -36 276 1 204 333 0 0 chr1 109716492 109716549 -172477115 - MIR SINE MIR -110 98 42 180 328 148 16 chr1 109717876 109718004 -172475660 + MIR SINE MIR 112 256 -6 639 303 153 50 chr1 109718708 109719824 -172473840 + L1MEd LINE L1 6 1236 -4883 447 307 83 46 chr1 109719858 109720266 -172473398 + HAL1b LINE L1 321 5934 -211 1365 193 151 37 chr1 109720867 109721141 -172472523 + LTR48 LTR ERV1 3 245 -542 2256 99 7 0 chr1 109721141 109721444 -172472220 + AluSp SINE Alu 1 305 -8 1365 193 151 37 chr1 109721444 109721785 -172471879 + LTR48 LTR ERV1 245 769 -18 26 0 0 0 chr1 109722038 109722064 -172471600 + AT_rich Low_complexity Low_complexity 1 26 0 4837 147 45 18 chr1 109722791 109723528 -172470136 + MER4D LTR ERV1 1 717 252 2096 124 60 14 chr1 109723528 109723876 -172469788 + THE1B LTR MaLR 1 364 0 11112 108 8 14 chr1 109723876 109724341 -172469323 + THE1B-int LTR MaLR 1 467 -1113 2125 121 0 0 chr1 109724341 109724682 -172468982 + AluSx SINE Alu 1 341 0 11112 108 8 14 chr1 109724682 109725805 -172467859 + THE1B-int LTR MaLR 467 1580 0 2186 119 50 42 chr1 109725805 109726166 -172467498 + THE1B LTR MaLR 1 364 0 4837 147 45 18 chr1 109726166 109726274 -172467390 + MER4D LTR ERV1 326 430 -35 1227 183 43 0 chr1 109726276 109726484 -172467180 + AluJb SINE Alu 65 281 -31 268 173 0 0 chr1 109726486 109726538 -172467126 + MER4D LTR ERV1 821 872 0 298 303 9 0 chr1 109727106 109727215 -172466449 - MER103 DNA DNA -45 121 12 4407 157 25 25 chr1 109727288 109728054 -172465610 + LTR39 LTR ERV1 1 766 -17 237 214 29 43 chr1 109728072 109728142 -172465522 - Charlie7 DNA MER1_type 0 2612 2544 958 189 12 141 chr1 109728364 109728659 -172465005 - MER58B DNA MER1_type -2079 341 108 2056 176 11 8 chr1 109728659 109729023 -172464641 + MLT1A1 LTR MaLR 1 365 0 958 189 12 141 chr1 109729023 109729118 -172464546 - MER58B DNA MER1_type -2312 108 2 294 87 0 0 chr1 109729782 109729828 -172463836 + (A)n Simple_repeat Simple_repeat 1 46 0 184 340 135 14 chr1 109730124 109730265 -172463399 + L3 LINE CR1 348 505 -1072 367 319 47 26 chr1 109730556 109730747 -172462917 + MIR SINE MIR 2 196 -66 2108 112 28 0 chr1 109731100 109731386 -172462278 + AluSq SINE Alu 1 294 -19 233 175 16 48 chr1 109731707 109731770 -172461894 + L3 LINE CR1 705 765 -812 1422 186 4 23 chr1 109734047 109734311 -172459353 + AluJb SINE Alu 1 259 -53 21 0 0 0 chr1 109736347 109736368 -172457296 + AT_rich Low_complexity Low_complexity 1 21 0 259 363 19 35 chr1 109736994 109737167 -172456497 + MIR SINE MIR 8 180 -75 26 50 0 0 chr1 109739212 109739252 -172454412 + AT_rich Low_complexity Low_complexity 1 40 0 1936 209 44 74 chr1 109739254 109739862 -172453802 - L1ME1 LINE L1 -25 6141 5552 * 2941 237 55 20 chr1 109739849 109740802 -172452862 - L1ME1 LINE L1 -890 5256 4271 367 260 71 8 chr1 109740817 109740944 -172452720 - MER96B DNA MER1_type? 0 417 283 501 238 111 6 chr1 109740970 109741152 -172452512 - L1ME1 LINE L1 -1847 4299 4096 1056 60 27 7 chr1 109741253 109741402 -172452262 - L1PA7 LINE L1 -221 5933 5782 * 1798 33 5 0 chr1 109741396 109741611 -172452053 + L1PA7 LINE L1 5565 5780 -392 198 329 27 27 chr1 109743217 109743290 -172450374 - L3 LINE CR1 -1 1576 1504 492 305 120 10 chr1 109745635 109745835 -172447829 - MIR SINE MIR -7 255 34 2453 68 10 0 chr1 109746231 109746539 -172447125 + AluY SINE Alu 1 311 0 1783 125 52 7 chr1 109746554 109746842 -172446822 + AluSx SINE Alu 1 301 -11 227 291 76 57 chr1 109747370 109747528 -172446136 + MIR SINE MIR 6 166 -96 938 300 12 4 chr1 109747784 109748034 -172445630 - MIR SINE MIR 0 262 11 23 0 0 0 chr1 109748133 109748156 -172445508 + AT_rich Low_complexity Low_complexity 1 23 0 334 264 82 9 chr1 109748328 109748438 -172445226 - L3 LINE CR1 -103 1474 1357 207 0 0 0 chr1 109748659 109748682 -172444982 + (TG)n Simple_repeat Simple_repeat 2 24 0 377 277 30 0 chr1 109748701 109748802 -172444862 + MIR SINE MIR 28 131 -131 40 0 0 0 chr1 109748851 109748891 -172444773 + AT_rich Low_complexity Low_complexity 1 40 0 196 118 20 20 chr1 109749156 109749207 -172444457 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 557 341 126 18 chr1 109749370 109749388 -172444276 + L3 LINE CR1 1021 1036 -541 2123 98 7 3 chr1 109749388 109749684 -172443980 - AluSx SINE Alu -11 301 5 557 341 126 18 chr1 109749684 109750055 -172443609 + L3 LINE CR1 1036 1452 -125 3234 159 23 25 chr1 109750621 109751263 -172442401 - L1MA9 LINE L1 -1 6311 5671 1689 185 5 63 chr1 109751263 109751524 -172442140 + L1M2 LINE L1 5322 5558 -754 1876 161 0 28 chr1 109751524 109751841 -172441823 + AluJb SINE Alu 2 309 -3 1689 185 5 63 chr1 109751841 109751946 -172441718 + L1M2 LINE L1 5558 5667 -645 306 311 89 58 chr1 109752845 109753240 -172440424 + L1ME LINE L1 4754 5160 -986 837 231 67 0 chr1 109753369 109753577 -172440087 - MER58A DNA MER1_type -2 222 1 259 286 57 43 chr1 109754417 109754557 -172439107 + L1MC/D LINE L1 5606 5747 -2061 3896 129 121 5 chr1 109754562 109755234 -172438430 - Tigger1 DNA MER2_type 0 2418 1669 567 91 0 0 chr1 109755244 109755321 -172438343 - Tigger1 DNA MER2_type -1946 472 396 407 195 0 0 chr1 109755317 109755394 -172438270 - Tigger1 DNA MER2_type -750 1668 1592 * 2583 14 0 0 chr1 109755533 109755819 -172437845 - AluYb8 SINE Alu -6 312 27 8777 152 43 19 chr1 109755819 109756202 -172437462 - Tigger1 DNA MER2_type -829 1589 1217 2206 129 0 0 chr1 109756202 109756511 -172437153 - AluSc SINE Alu 0 309 1 8777 152 43 19 chr1 109756511 109757678 -172435986 - Tigger1 DNA MER2_type -1201 1217 1 263 308 70 13 chr1 109757735 109757915 -172435749 + MLT1J LTR MaLR 6 201 -310 247 292 14 0 chr1 109757984 109758056 -172435608 + HAL1 LINE L1 1503 1575 -932 330 335 87 35 chr1 109758367 109758597 -172435067 + HAL1 LINE L1 2265 2506 -1 2304 92 3 3 chr1 109758624 109758928 -172434736 + AluSq SINE Alu 1 304 -9 504 291 80 47 chr1 109758990 109759527 -172434137 + L1ME LINE L1 5266 5819 -302 181 292 69 0 chr1 109759531 109759603 -172434061 - L2 LINE L2 -74 3239 3163 488 303 128 44 chr1 109760714 109761282 -172432382 - HAL1 LINE L1 -229 2278 1663 979 235 146 36 chr1 109761297 109761352 -172432312 + MSTD LTR MaLR 1 49 -347 1558 104 46 0 chr1 109761352 109761592 -172432072 + L1PA10 LINE L1 5917 6167 -1 979 235 146 36 chr1 109761592 109761893 -172431771 + MSTD LTR MaLR 49 396 0 807 289 129 28 chr1 109761895 109761950 -172431714 - HAL1 LINE L1 -889 1618 1570 2145 123 3 0 chr1 109761950 109762259 -172431405 + AluSx SINE Alu 3 312 0 807 289 129 28 chr1 109762259 109762891 -172430773 - HAL1 LINE L1 -937 1570 861 496 242 130 43 chr1 109762901 109763126 -172430538 - L1MEd LINE L1 -4862 1257 1064 2031 129 0 13 chr1 109763126 109763428 -172430236 - AluSx SINE Alu -14 298 1 496 242 130 43 chr1 109763428 109763615 -172430049 - L1MEd LINE L1 -5055 1064 895 245 245 0 116 chr1 109763709 109763856 -172429808 - HAL1 LINE L1 -2295 212 83 328 250 17 25 chr1 109765096 109765216 -172428448 + L1MC4a LINE L1 5777 5895 -1913 * 4020 195 16 37 chr1 109765201 109765318 -172428346 + L1MD2 LINE L1 5328 5446 -913 2515 61 0 0 chr1 109765318 109765628 -172428036 + AluY SINE Alu 1 310 -1 4020 195 16 37 chr1 109765628 109766432 -172427232 + L1MD2 LINE L1 5446 6230 -129 2890 146 10 14 chr1 109766522 109767010 -172426654 + MER66B LTR ERV1 1 486 0 455 216 9 9 chr1 109767342 109767453 -172426211 + L1MD2 LINE L1 6108 6218 -141 368 284 42 84 chr1 109767562 109767777 -172425887 - MIR SINE MIR 0 262 57 571 266 13 19 chr1 109767938 109768096 -172425568 + MIR SINE MIR 91 247 -15 225 118 98 20 chr1 109768238 109768340 -172425324 + (TA)n Simple_repeat Simple_repeat 2 111 0 * 395 157 27 65 chr1 109768269 109768454 -172425210 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 206 125 0 25 chr1 109769382 109769422 -172424242 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 23 78 0 0 chr1 109770783 109770834 -172422830 + AT_rich Low_complexity Low_complexity 1 51 0 346 254 12 13 chr1 109770928 109771024 -172422640 + MIR SINE MIR 63 158 -50 410 295 163 0 chr1 109771294 109771423 -172422241 + MIR SINE MIR 1 150 -112 2390 97 3 0 chr1 109771458 109771768 -172421896 + AluSx SINE Alu 1 311 -1 591 276 145 18 chr1 109771789 109772017 -172421647 - MIR SINE MIR -3 259 3 1695 188 0 7 chr1 109772089 109772392 -172421272 + AluJo SINE Alu 1 301 -11 300 384 72 0 chr1 109772641 109772766 -172420898 + L2 LINE L2 3137 3270 -2 1563 150 47 18 chr1 109774802 109775076 -172418588 + AluJo SINE Alu 10 291 -21 804 301 9 9 chr1 109775130 109775349 -172418315 + MIR SINE MIR 23 241 -21 244 320 27 0 chr1 109775650 109775725 -172417939 + L3 LINE CR1 1228 1304 -273 288 226 23 30 chr1 109775729 109775862 -172417802 + T-rich Low_complexity Low_complexity 1 132 0 225 233 10 19 chr1 109776207 109776310 -172417354 + GA-rich Low_complexity Low_complexity 5 106 0 24 0 0 0 chr1 109776470 109776494 -172417170 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 109777315 109777336 -172416328 + AT_rich Low_complexity Low_complexity 1 21 0 256 341 159 0 chr1 109778771 109778859 -172414805 + MER91A DNA MER1_type 24 125 -71 248 250 15 29 chr1 109779453 109779521 -172414143 - L2 LINE L2 -17 3296 3230 1795 311 145 45 chr1 109781311 109783112 -172410552 - L2 LINE L2 -4 3309 1313 1033 172 0 16 chr1 109783116 109783302 -172410362 + FRAM SINE Alu 1 175 -1 23 0 0 0 chr1 109783944 109783967 -172409697 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 109784591 109784612 -172409052 + AT_rich Low_complexity Low_complexity 1 21 0 520 343 90 42 chr1 109784788 109785388 -172408276 + L2 LINE L2 1812 2440 -874 546 283 93 3 chr1 109785392 109785560 -172408104 - MER5B DNA MER1_type 0 189 1 182 320 243 17 chr1 109785566 109785747 -172407917 + L2 LINE L2 2521 2742 -572 776 171 46 4 chr1 109786069 109786306 -172407358 - Tigger1 DNA MER2_type -1 2417 2078 506 206 0 0 chr1 109786314 109786416 -172407248 - FRAM SINE Alu -6 170 69 3946 133 41 17 chr1 109786417 109787257 -172406407 - Tigger1 DNA MER2_type -325 2093 1275 7314 42 0 0 chr1 109787257 109788329 -172405335 - L1PA5 LINE L1 0 6154 5083 3946 133 41 17 chr1 109788329 109788714 -172404950 - Tigger1 DNA MER2_type -1143 1275 1 213 321 19 66 chr1 109788741 109788847 -172404817 - L2 LINE L2 -298 2974 2874 46 0 0 0 chr1 109789124 109789170 -172404494 + AT_rich Low_complexity Low_complexity 1 46 0 25 75 0 0 chr1 109789237 109789290 -172404374 + AT_rich Low_complexity Low_complexity 1 53 0 392 289 111 32 chr1 109789319 109789509 -172404155 - MIR SINE MIR -56 206 2 1369 259 136 10 chr1 109789570 109790056 -172403608 + MLT1H LTR MaLR 2 548 -1 408 351 65 0 chr1 109790075 109790260 -172403404 - MIR SINE MIR 0 262 66 23 0 0 0 chr1 109791085 109791108 -172402556 + AT_rich Low_complexity Low_complexity 1 23 0 2379 135 26 9 chr1 109791310 109791731 -172401933 - L1MC1 LINE L1 -155 6973 6546 17169 48 2 0 chr1 109791831 109794674 -172398990 - L1PA5 LINE L1 -88 6066 3218 6655 202 24 18 chr1 109794683 109795100 -172398564 - L1MC1 LINE L1 -743 6198 5785 2057 121 0 0 chr1 109795100 109795405 -172398259 - AluSx SINE Alu 0 305 1 6655 202 24 18 chr1 109795405 109796929 -172396735 - L1MC1 LINE L1 -1156 5785 4416 413 192 0 13 chr1 109796930 109797008 -172396656 - Tigger5 DNA MER2_type 0 2323 2247 348 157 14 57 chr1 109797013 109797083 -172396581 + Tigger5 DNA MER2_type 2251 2317 -6 261 222 0 32 chr1 109797085 109797148 -172396516 - Tigger5 DNA MER2_type -2244 79 19 966 244 75 6 chr1 109797148 109797467 -172396197 - L1MC1 LINE L1 -2524 4417 4077 210 366 37 0 chr1 109797590 109797672 -172395992 + MIR SINE MIR 58 142 -66 916 195 12 0 chr1 109800196 109800360 -172393304 - FRAM SINE Alu -11 165 1 1261 166 5 0 chr1 109800545 109800750 -172392914 + AluJo SINE Alu 87 292 -20 345 47 0 0 chr1 109800750 109800793 -172392871 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 389 30 0 chr1 109800806 109800937 -172392727 - L2 LINE L2 -221 3051 2917 218 264 55 66 chr1 109802001 109802092 -172391572 + L2 LINE L2 3141 3230 -42 3026 176 60 31 chr1 109803355 109804069 -172389595 + L1MB7 LINE L1 5424 6158 -26 243 0 0 0 chr1 109804238 109804265 -172389399 + (TG)n Simple_repeat Simple_repeat 2 28 0 645 174 20 85 chr1 109804402 109804603 -172389061 - L1MA7 LINE L1 -5 6286 6099 25 0 0 0 chr1 109806168 109806193 -172387471 + AT_rich Low_complexity Low_complexity 1 25 0 938 265 59 61 chr1 109806579 109806720 -172386944 - L1MC1 LINE L1 -4888 1535 1395 4486 121 12 20 chr1 109806720 109807472 -172386192 - L1MA4 LINE L1 -6 6294 5549 938 265 59 61 chr1 109807472 109808006 -172385658 - L1MC1 LINE L1 -5028 1395 1129 472 313 89 44 chr1 109808311 109808784 -172384880 - L1MC1 LINE L1 -5911 512 19 195 120 0 0 chr1 109809009 109809034 -172384630 + (T)n Simple_repeat Simple_repeat 1 25 0 1590 163 45 31 chr1 109809841 109810130 -172383534 + AluJo SINE Alu 1 293 -19 586 315 87 12 chr1 109810805 109811138 -172382526 - L2 LINE L2 -406 2908 2551 28 0 0 0 chr1 109811253 109811281 -172382383 + AT_rich Low_complexity Low_complexity 1 28 0 547 278 69 26 chr1 109811780 109812172 -172381492 + LTR16B LTR ERVL 32 463 -1 214 113 100 50 chr1 109813862 109813942 -172379722 + A-rich Low_complexity Low_complexity 4 87 0 195 100 0 0 chr1 109814079 109814109 -172379555 + (CA)n Simple_repeat Simple_repeat 2 31 0 380 254 70 28 chr1 109816251 109816393 -172377271 + L3 LINE CR1 1133 1280 -297 1373 289 60 2 chr1 109816421 109816837 -172376827 - L2 LINE L2 0 3313 2874 186 229 21 21 chr1 109817059 109817107 -172376557 - MIR3 SINE MIR -52 156 109 622 317 55 61 chr1 109817205 109817662 -172376002 + MLT1H LTR MaLR 95 548 -1 268 301 85 67 chr1 109818709 109819038 -172374626 + MLT1H-int LTR MaLR 1033 1367 -4 740 295 36 16 chr1 109819045 109819296 -172374368 + MLT1H LTR MaLR 8 263 -286 251 259 36 71 chr1 109819535 109819647 -172374017 + MLT1H LTR MaLR 395 502 -47 275 256 181 15 chr1 109819648 109819781 -172373883 + MIR SINE MIR 92 246 -16 28 29 0 0 chr1 109819990 109820025 -172373639 + AT_rich Low_complexity Low_complexity 1 35 0 434 318 11 48 chr1 109820030 109820219 -172373445 + L3 LINE CR1 1291 1472 -105 190 303 76 15 chr1 109820604 109820670 -172372994 - L2 LINE L2 -8 3264 3195 21 0 0 0 chr1 109821642 109821663 -172372001 + AT_rich Low_complexity Low_complexity 1 21 0 183 317 49 37 chr1 109824765 109824847 -172368817 + MIR SINE MIR 18 100 -108 200 281 66 58 chr1 109825098 109825219 -172368445 + MIR SINE MIR 132 253 -9 213 227 0 0 chr1 109825279 109825323 -172368341 + CT-rich Low_complexity Low_complexity 1 44 0 211 261 14 14 chr1 109826141 109826210 -172367454 + L3b LINE CR1 1337 1405 -178 219 167 0 21 chr1 109826608 109826656 -172367008 + A-rich Low_complexity Low_complexity 1 47 0 445 311 69 51 chr1 109827164 109827553 -172366111 + L1ME4a LINE L1 5698 6093 -28 2200 112 48 28 chr1 109827607 109827964 -172365700 - THE1B LTR MaLR 0 364 1 283 366 81 12 chr1 109828070 109828242 -172365422 - MIR3 SINE MIR -18 190 7 29 0 0 0 chr1 109828409 109828438 -172365226 + AT_rich Low_complexity Low_complexity 1 29 0 228 231 269 0 chr1 109828604 109828682 -172364982 - L2 LINE L2 -1 3312 3214 6001 76 9 0 chr1 109828951 109829742 -172363922 - L1PA7 LINE L1 -1 6153 5356 * 7188 88 8 2 chr1 109829741 109830800 -172362864 + L1P LINE L1 4351 5416 -738 1540 68 16 0 chr1 109830909 109831100 -172362564 + AluYb8 SINE Alu 2 195 -123 404 181 84 0 chr1 109831620 109831703 -172361961 + L1MCa LINE L1 6 95 -6331 337 23 23 0 chr1 109831703 109831746 -172361918 - L1P3 LINE L1 -594 5560 5517 1666 45 0 0 chr1 109831746 109831970 -172361694 + L1PA7 LINE L1 5942 6166 0 37 69 0 0 chr1 109831994 109832066 -172361598 + AT_rich Low_complexity Low_complexity 1 72 0 2047 213 16 5 chr1 109832066 109832499 -172361165 + L1MCa LINE L1 70 507 -5919 3949 188 36 21 chr1 109832503 109832544 -172361120 + L1MCa LINE L1 1561 1600 -4826 2109 132 3 7 chr1 109832544 109832854 -172360810 + AluSx SINE Alu 1 309 -3 3949 188 36 21 chr1 109832854 109834672 -172358992 + L1MCa LINE L1 1600 3545 -2881 284 286 120 51 chr1 109834786 109834961 -172358703 - L3 LINE CR1 -255 1322 1136 224 403 13 26 chr1 109835599 109835832 -172357832 + L2 LINE L2 2819 3048 -224 786 153 74 18 chr1 109835854 109836017 -172357647 + L1MB2 LINE L1 5993 6164 -7 21 36 0 0 chr1 109836025 109836053 -172357611 + AT_rich Low_complexity Low_complexity 1 28 0 325 297 172 43 chr1 109836243 109836452 -172357212 + L3 LINE CR1 1342 1577 0 1160 252 103 41 chr1 109836799 109837235 -172356429 + L2 LINE L2 2230 2692 -622 418 235 17 17 chr1 109837269 109837384 -172356280 + L1ME1 LINE L1 6058 6331 -3 186 273 91 0 chr1 109837500 109837555 -172356109 + L2 LINE L2 3250 3309 -4 288 0 0 0 chr1 109837780 109837812 -172355852 + (GA)n Simple_repeat Simple_repeat 2 33 0 306 125 0 0 chr1 109837887 109837935 -172355729 + (TG)n Simple_repeat Simple_repeat 2 49 0 342 0 0 0 chr1 109838000 109838038 -172355626 + (TG)n Simple_repeat Simple_repeat 2 39 0 461 269 32 81 chr1 109838406 109838592 -172355072 + MER5B DNA MER1_type 1 177 -1 301 252 106 11 chr1 109838962 109839052 -172354612 - MIR SINE MIR -63 145 54 2324 86 3 0 chr1 109839096 109839398 -172354266 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 109839629 109839652 -172354012 + AT_rich Low_complexity Low_complexity 1 23 0 186 133 0 0 chr1 109839816 109839846 -172353818 + (A)n Simple_repeat Simple_repeat 1 30 0 276 206 0 48 chr1 109840460 109840523 -172353141 + tRNA-Gln-CAG tRNA tRNA 1 60 -15 449 339 194 24 chr1 109840594 109841140 -172352524 + L2 LINE L2 2339 2977 -337 231 333 0 15 chr1 109841302 109841368 -172352296 - L2 LINE L2 -17 3255 3191 705 216 36 0 chr1 109841495 109841662 -172352002 - L1MA10 LINE L1 0 6334 6162 734 170 13 29 chr1 109841675 109841989 -172351675 + CT-rich Low_complexity Low_complexity 1 309 0 7143 187 119 25 chr1 109842004 109842227 -172351437 - L1MA10 LINE L1 -192 5997 5796 2599 55 0 0 chr1 109842227 109842538 -172351126 - AluY SINE Alu 0 311 1 7143 187 119 25 chr1 109842538 109844943 -172348721 - L1MA10 LINE L1 -393 5796 3068 218 32 32 0 chr1 109844943 109844974 -172348690 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7143 187 119 25 chr1 109844974 109845134 -172348530 - L1MA10 LINE L1 -3121 3068 2925 728 75 9 9 chr1 109845139 109845245 -172348419 - MSTA LTR MaLR -322 106 1 188 156 31 0 chr1 109846117 109846149 -172347515 - L2 LINE L2 -18 3295 3263 181 259 161 25 chr1 109846161 109846242 -172347422 - L2 LINE L2 -29 3284 3193 307 333 29 9 chr1 109846478 109846583 -172347081 + MIR3 SINE MIR 9 115 -93 30 27 0 0 chr1 109846880 109846917 -172346747 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 109847925 109847948 -172345716 + AT_rich Low_complexity Low_complexity 1 23 0 1338 94 0 0 chr1 109849935 109850105 -172343559 + AluSp SINE Alu 130 299 -14 1896 185 27 108 chr1 109852013 109852380 -172341284 - MER21B LTR ERV1 -31 832 518 333 0 0 0 chr1 109852380 109852417 -172341247 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 1896 185 27 108 chr1 109852417 109852567 -172341097 - MER21B LTR ERV1 -345 518 357 1924 198 46 16 chr1 109852586 109852959 -172340705 - MER21B LTR ERV1 -478 385 2 433 394 12 6 chr1 109854323 109854493 -172339171 - MER91A DNA MER1_type -24 172 2 193 187 27 13 chr1 109854806 109854881 -172338783 + (TGAA)n Simple_repeat Simple_repeat 1 76 0 30 27 0 0 chr1 109855130 109855167 -172338497 + AT_rich Low_complexity Low_complexity 1 37 0 275 333 45 36 chr1 109855189 109855300 -172338364 - MIR SINE MIR -149 113 2 389 279 180 31 chr1 109856056 109856278 -172337386 - L2 LINE L2 -527 2787 2533 21 0 0 0 chr1 109857315 109857336 -172336328 + AT_rich Low_complexity Low_complexity 1 21 0 199 345 108 7 chr1 109857579 109857718 -172335946 - L2 LINE L2 -971 2343 2191 194 0 39 0 chr1 109859691 109859717 -172333947 + (TTG)n Simple_repeat Simple_repeat 2 28 0 747 167 0 0 chr1 109859720 109859834 -172333830 - FRAM SINE Alu -31 145 32 2158 125 3 0 chr1 109860475 109860772 -172332892 + AluSx SINE Alu 1 298 -14 33 0 0 0 chr1 109860772 109860805 -172332859 + AT_rich Low_complexity Low_complexity 1 33 0 253 278 56 0 chr1 109860973 109861045 -172332619 - L3 LINE CR1 -881 696 621 1718 166 10 3 chr1 109861080 109861381 -172332283 - AluJo SINE Alu -6 306 4 306 305 35 35 chr1 109862995 109863136 -172330528 + L2 LINE L2 3173 3313 0 1921 173 3 14 chr1 109863767 109864114 -172329550 - MER2 DNA MER2_type 0 344 2 766 226 44 0 chr1 109864114 109864273 -172329391 + MER69A DNA AcHobo 12 177 0 186 244 0 0 chr1 109864273 109864314 -172329350 + L2 LINE L2 3217 3257 -15 5503 15 0 0 chr1 109866509 109867174 -172326490 - L1PA3 LINE L1 -272 5883 5219 2065 124 9 25 chr1 109867181 109867496 -172326168 - AluSx SINE Alu 0 312 3 232 317 39 9 chr1 109867684 109867864 -172325800 - MIR SINE MIR 0 262 23 215 309 18 0 chr1 109868178 109868233 -172325431 + L2 LINE L2 3206 3261 -11 371 239 194 32 chr1 109869730 109869885 -172323779 - MIR SINE MIR 0 262 83 503 331 77 53 chr1 109870489 109871108 -172322556 - L2 LINE L2 -60 3253 2619 186 191 0 0 chr1 109871266 109871308 -172322356 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2143 104 3 3 chr1 109872612 109872901 -172320763 - AluSx SINE Alu -23 289 1 22 0 0 0 chr1 109873183 109873205 -172320459 + AT_rich Low_complexity Low_complexity 1 22 0 399 321 57 13 chr1 109875548 109875707 -172317957 + L2 LINE L2 3107 3272 0 188 283 0 38 chr1 109875879 109875932 -172317732 + MIR SINE MIR 70 120 -142 371 327 112 22 chr1 109875937 109876160 -172317504 + L2 LINE L2 2966 3208 -64 302 143 89 0 chr1 109876212 109876268 -172317396 + MIR3 SINE MIR 132 192 -16 712 82 0 0 chr1 109877754 109877852 -172315812 - L1PA4 LINE L1 0 6155 6058 670 278 44 36 chr1 109878214 109878466 -172315198 - MIR SINE MIR -2 260 7 328 124 41 10 chr1 109879272 109879369 -172314295 + (TA)n Simple_repeat Simple_repeat 2 101 0 21 0 0 0 chr1 109880462 109880483 -172313181 + AT_rich Low_complexity Low_complexity 1 21 0 252 412 39 0 chr1 109880647 109880800 -172312864 + L2 LINE L2 3107 3265 -7 189 154 0 0 chr1 109880951 109880990 -172312674 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 246 310 0 0 chr1 109881225 109881296 -172312368 - MIR3 SINE MIR -41 167 97 229 269 0 0 chr1 109882173 109882225 -172311439 + (CA)n Simple_repeat Simple_repeat 1 52 0 24 0 0 0 chr1 109882294 109882318 -172311346 + AT_rich Low_complexity Low_complexity 1 24 0 667 253 24 6 chr1 109884923 109885089 -172308575 - MER5A DNA MER1_type -20 169 1 852 211 53 22 chr1 109885134 109885362 -172308302 + MER106A DNA MER1_type 2 236 0 240 293 60 52 chr1 109885651 109885767 -172307897 + MIR SINE MIR 122 238 -24 2096 200 23 58 chr1 109886991 109887531 -172306133 - MER54A LTR ERVL 0 901 164 2114 118 0 19 chr1 109887699 109887722 -172305942 - AluSq SINE Alu -5 308 286 198 0 0 0 chr1 109887722 109887744 -172305920 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2114 118 0 19 chr1 109887744 109888034 -172305630 - AluSq SINE Alu -27 286 1 222 257 176 0 chr1 109888065 109888139 -172305525 - MIR SINE MIR 0 262 176 199 239 22 0 chr1 109888377 109888423 -172305241 - MIR SINE MIR -112 150 104 219 291 38 13 chr1 109889105 109889184 -172304480 + L2 LINE L2 3232 3312 -1 1935 166 19 14 chr1 109890462 109890824 -172302840 + MER31A LTR ERV1 1 364 -121 569 147 9 55 chr1 109890865 109890948 -172302716 - MER31A LTR ERV1 -381 104 26 2052 74 15 0 chr1 109890948 109891037 -172302627 + AluY SINE Alu 37 123 -188 243 0 0 0 chr1 109891037 109891064 -172302600 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2052 74 15 0 chr1 109891064 109891244 -172302420 + AluY SINE Alu 123 310 -1 569 147 9 55 chr1 109891244 109891269 -172302395 - MER31A LTR ERV1 -459 26 1 1576 219 0 13 chr1 109891349 109891660 -172302004 + AluJo SINE Alu 2 308 -4 2253 91 0 3 chr1 109892848 109893156 -172300508 - AluY SINE Alu -4 307 1 544 15 0 0 chr1 109893204 109893272 -172300392 - L1PA3 LINE L1 0 6155 6088 221 254 0 0 chr1 109893492 109893555 -172300109 + T-rich Low_complexity Low_complexity 1 63 0 4275 26 10 1 chr1 109893683 109894474 -172299190 - L1PA4 LINE L1 -383 5772 4978 3055 35 5 3 chr1 109894474 109894872 -172298792 + L1PA4 LINE L1 5777 6155 0 227 289 48 12 chr1 109895186 109895269 -172298395 - L2 LINE L2 -188 3084 2999 30 59 0 0 chr1 109895424 109895475 -172298189 + AT_rich Low_complexity Low_complexity 1 51 0 2196 91 10 7 chr1 109897367 109897675 -172295989 + AluY SINE Alu 1 309 -2 928 150 19 0 chr1 109898791 109898951 -172294713 + MER5A DNA MER1_type 26 188 -1 1954 123 91 9 chr1 109899097 109899439 -172294225 + THE1C LTR MaLR 4 373 -2 217 350 17 50 chr1 109900227 109900347 -172293317 - L2 LINE L2 -4 3268 3153 1028 294 85 53 chr1 109900615 109901288 -172292376 + L2 LINE L2 2592 3296 -17 216 97 0 0 chr1 109901294 109901325 -172292339 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 239 274 16 0 chr1 109901579 109901641 -172292023 - L2 LINE L2 -9 3304 3242 2393 52 0 3 chr1 109902201 109902490 -172291174 - AluY SINE Alu -23 288 1 235 273 18 18 chr1 109905160 109905270 -172288394 + (TA)n Simple_repeat Simple_repeat 1 110 0 22 35 0 0 chr1 109905475 109905504 -172288160 + AT_rich Low_complexity Low_complexity 1 29 0 342 254 131 61 chr1 109905624 109905869 -172287795 + L1ME4a LINE L1 5352 5613 -581 246 232 116 0 chr1 109906111 109906223 -172287441 + L1ME4a LINE L1 5993 6117 -4 192 186 68 68 chr1 109906728 109906787 -172286877 + MIR SINE MIR 91 149 -113 237 363 0 11 chr1 109907211 109907302 -172286362 + MIR SINE MIR 15 104 -158 1824 179 23 40 chr1 109907310 109907706 -172285958 + MLT2C1 LTR ERVL 1 389 -8 33 56 0 0 chr1 109907773 109907827 -172285837 + AT_rich Low_complexity Low_complexity 1 54 0 183 263 0 0 chr1 109907859 109907897 -172285767 + MIR SINE MIR 223 260 -2 336 127 0 0 chr1 109908425 109908480 -172285184 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 708 240 64 60 chr1 109908506 109908739 -172284925 - MIR SINE MIR -6 256 23 1832 133 3 66 chr1 109909565 109909897 -172283767 + AluSx SINE Alu 1 311 -1 512 287 0 8 chr1 109910340 109910469 -172283195 + MIR SINE MIR 6 133 -129 276 382 62 17 chr1 109910900 109911078 -172282586 + MIR SINE MIR 23 208 -54 223 191 0 0 chr1 109911275 109911317 -172282347 + (TA)n Simple_repeat Simple_repeat 2 43 0 358 293 38 30 chr1 109914153 109914286 -172279378 + MIR SINE MIR 59 192 -70 237 219 0 0 chr1 109914738 109914779 -172278885 + MIR SINE MIR 104 144 -118 2188 111 23 54 chr1 109915190 109915577 -172278087 + THE1C LTR MaLR 1 375 0 240 206 200 100 chr1 109915592 109915752 -172277912 + MIR SINE MIR 75 250 -12 327 284 68 0 chr1 109916131 109916205 -172277459 - L2 LINE L2 0 3272 3194 267 277 0 0 chr1 109916202 109916249 -172277415 - L2 LINE L2 -25 3288 3242 * 201 350 103 43 chr1 109916423 109916772 -172276892 - L2 LINE L2 -349 2965 2596 231 368 34 34 chr1 109917058 109917175 -172276489 - L2 LINE L2 -691 2623 2507 316 329 48 35 chr1 109917374 109917684 -172275980 - L2 LINE L2 -1004 2310 1997 400 261 43 0 chr1 109918499 109918614 -172275050 + MIR SINE MIR 47 166 -96 23 54 0 0 chr1 109918661 109918698 -172274966 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr1 109918727 109918749 -172274915 + AT_rich Low_complexity Low_complexity 1 22 0 316 305 70 0 chr1 109919499 109919627 -172274037 - MIR SINE MIR -73 189 53 239 196 0 0 chr1 109920958 109921009 -172272655 + L1MC4 LINE L1 6653 6703 -1339 2071 151 20 20 chr1 109921020 109921371 -172272293 - THE1B LTR MaLR 0 364 14 534 250 108 57 chr1 109921651 109921863 -172271801 + MIR SINE MIR 36 258 -4 215 250 0 0 chr1 109923054 109923098 -172270566 + CT-rich Low_complexity Low_complexity 1 44 0 251 164 16 49 chr1 109923108 109923169 -172270495 - L2 LINE L2 -1 3312 3254 23 33 0 0 chr1 109923595 109923625 -172270039 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 109924061 109924089 -172269575 + AT_rich Low_complexity Low_complexity 1 28 0 238 286 42 42 chr1 109924140 109924259 -172269405 - LTR33 LTR ERVL 0 521 403 185 416 11 0 chr1 109924492 109924581 -172269083 - MIR SINE MIR -89 119 30 335 348 59 32 chr1 109924705 109924892 -172268772 - MIR3 SINE MIR 0 208 17 281 304 17 26 chr1 109925156 109925271 -172268393 + L2 LINE L2 2284 2397 -917 335 254 0 0 chr1 109925295 109925362 -172268302 - L2 LINE L2 -2 3311 3245 829 88 0 0 chr1 109926867 109926980 -172266684 - AluSc SINE Alu -12 297 185 638 143 0 0 chr1 109926981 109927079 -172266585 + AluSc SINE Alu 80 177 -132 204 163 0 0 chr1 109927156 109927199 -172266465 + (CA)n Simple_repeat Simple_repeat 2 44 0 292 252 344 0 chr1 109927710 109927841 -172265823 + MER5A DNA MER1_type 13 188 -1 471 238 144 6 chr1 109928165 109928346 -172265318 - MER5C DNA MER1_type 0 324 119 1262 123 0 0 chr1 109928349 109928528 -172265136 - AluSg/x SINE Alu -5 307 129 430 275 75 0 chr1 109928533 109928653 -172265011 - MER5C DNA MER1_type -195 129 1 1386 203 11 14 chr1 109930217 109930503 -172263161 - AluJo SINE Alu -23 289 5 3857 166 88 124 chr1 109931225 109932067 -172261597 + L1MC3 LINE L1 6367 7178 -607 345 278 0 0 chr1 109932067 109932157 -172261507 + MLT1F1 LTR MaLR 35 124 -443 3857 166 88 124 chr1 109932157 109932744 -172260920 + L1MC3 LINE L1 7178 7785 0 4934 182 27 11 chr1 109933520 109935247 -172258417 + L1MA7 LINE L1 4539 6290 -1 2093 159 18 18 chr1 109935451 109935840 -172257824 + MLT1B LTR MaLR 1 389 -1 276 304 109 65 chr1 109936014 109936152 -172257512 + L2 LINE L2 3128 3271 -1 810 218 37 17 chr1 109936904 109937209 -172256455 - MLT1A1 LTR MaLR 0 365 1 25 0 0 0 chr1 109937806 109937831 -172255833 + AT_rich Low_complexity Low_complexity 1 25 0 192 362 0 0 chr1 109937877 109937935 -172255729 - L2 LINE L2 -491 2823 2766 195 139 0 0 chr1 109938794 109938830 -172254834 + (TATG)n Simple_repeat Simple_repeat 1 36 0 244 297 0 16 chr1 109938870 109938934 -172254730 + MIR SINE MIR 8 70 -192 438 307 39 20 chr1 109939067 109939220 -172254444 + L2 LINE L2 2425 2580 -734 706 189 8 0 chr1 109939220 109939347 -172254317 - LTR16C LTR ERVL -2 489 362 306 290 75 0 chr1 109939575 109939668 -172253996 + L2 LINE L2 2985 3084 -229 1643 150 20 0 chr1 109940029 109940282 -172253382 - AluJo SINE Alu -54 258 1 32 26 0 0 chr1 109941312 109941351 -172252313 + AT_rich Low_complexity Low_complexity 1 39 0 277 312 11 11 chr1 109941594 109941687 -172251977 - L2 LINE L2 -564 2750 2658 196 265 83 53 chr1 109941733 109941865 -172251799 - L2 LINE L2 -94 3219 3084 1957 124 53 7 chr1 109941866 109942165 -172251499 + AluSq SINE Alu 1 313 0 944 237 16 4 chr1 109942403 109942648 -172251016 - L1MD1 LINE L1 -302 5940 5693 26 30 0 0 chr1 109944092 109944125 -172249539 + AT_rich Low_complexity Low_complexity 1 33 0 692 309 60 34 chr1 109946067 109946565 -172247099 - MER34 LTR ERV1 -12 530 20 214 184 0 83 chr1 109946913 109947022 -172246642 + A-rich Low_complexity Low_complexity 6 105 0 245 316 171 30 chr1 109947629 109947892 -172245772 + MER115 DNA AcHobo 43 342 -351 201 254 68 68 chr1 109948076 109948135 -172245529 + L2 LINE L2 3159 3217 -55 1980 155 0 3 chr1 109948284 109948594 -172245070 - AluJb SINE Alu -3 309 1 339 298 120 13 chr1 109948854 109949012 -172244652 + MIR SINE MIR 54 228 -34 24 0 0 0 chr1 109949097 109949121 -172244543 + AT_rich Low_complexity Low_complexity 1 24 0 2214 180 42 0 chr1 109951031 109951436 -172242228 - MSTB LTR MaLR -4 422 1 1927 144 20 0 chr1 109952776 109953081 -172240583 - AluSx SINE Alu 0 312 2 8111 88 9 2 chr1 109953933 109955074 -172238590 + L1PA7 LINE L1 3851 4999 -1147 2465 28 0 0 chr1 109955074 109955358 -172238306 + L1PA3 LINE L1 5858 6145 -10 354 61 0 0 chr1 109955358 109955407 -172238257 + (TTAAA)n Simple_repeat Simple_repeat 4 52 0 7078 58 2 0 chr1 109955410 109956569 -172237095 + L1PA7 LINE L1 4992 6154 0 1769 126 6 93 chr1 109956898 109957231 -172236433 - AluSx SINE Alu -8 304 1 597 232 114 46 chr1 109957435 109957713 -172235951 - L1MC4a LINE L1 -204 5917 5620 502 236 157 17 chr1 109957727 109957905 -172235759 - L1MC4a LINE L1 -2277 5531 5329 352 277 61 85 chr1 109957912 109958286 -172235378 - L1MC4a LINE L1 -1185 4961 4258 684 326 88 16 chr1 109958314 109958805 -172234859 - HAL1b LINE L1 -769 579 54 496 313 31 0 chr1 109961131 109961291 -172232373 - MIR SINE MIR -1 261 97 397 341 211 5 chr1 109961677 109961900 -172231764 + L3b LINE CR1 1193 1461 -122 206 277 158 20 chr1 109962400 109962501 -172231163 + L2 LINE L2 2616 2730 -584 284 317 87 0 chr1 109962672 109962776 -172230888 + L2 LINE L2 3134 3246 -26 206 315 130 11 chr1 109962843 109962935 -172230729 - L2 LINE L2 0 3272 3170 189 0 0 0 chr1 109963323 109963344 -172230320 + (CA)n Simple_repeat Simple_repeat 2 22 0 2299 88 7 0 chr1 109965773 109966079 -172227585 - AluSc SINE Alu -1 308 1 1836 141 40 60 chr1 109967225 109967595 -172226069 - THE1B LTR MaLR -1 363 1 1013 287 51 13 chr1 109968840 109969213 -172224451 - HAL1 LINE L1 -2117 390 4 1995 149 3 3 chr1 109969445 109969747 -172223917 - AluSx SINE Alu -10 302 1 32 43 0 0 chr1 109969844 109969890 -172223774 + AT_rich Low_complexity Low_complexity 1 46 0 215 295 53 42 chr1 109971437 109971532 -172222132 + L2 LINE L2 2973 3068 -204 21 0 0 0 chr1 109974048 109974069 -172219595 + AT_rich Low_complexity Low_complexity 1 21 0 247 269 0 0 chr1 109974349 109974401 -172219263 + (CATA)n Simple_repeat Simple_repeat 3 54 0 2084 81 19 26 chr1 109974469 109974777 -172218887 - AluY SINE Alu -5 306 1 1894 103 0 11 chr1 109974966 109975237 -172218427 + AluSc SINE Alu 35 302 -7 206 326 41 0 chr1 109976596 109976645 -172217019 + L2 LINE L2 3127 3177 -95 273 196 0 0 chr1 109976877 109976933 -172216731 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 205 182 0 0 chr1 109976960 109976993 -172216671 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 214 217 67 0 chr1 109977076 109977136 -172216528 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 207 0 0 0 chr1 109978747 109978770 -172214894 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1379 204 53 0 chr1 109978776 109979040 -172214624 - AluJo SINE Alu -34 278 1 789 280 0 10 chr1 109979559 109979759 -172213905 + MER58A DNA MER1_type 22 219 -5 23 54 0 0 chr1 109979992 109980029 -172213635 + AT_rich Low_complexity Low_complexity 1 37 0 2349 176 37 18 chr1 109980067 109980768 -172212896 + L1MB3 LINE L1 5416 6182 -1 30 69 0 0 chr1 109980769 109980827 -172212837 + AT_rich Low_complexity Low_complexity 1 58 0 282 325 135 18 chr1 109980836 109980999 -172212665 + MIR SINE MIR 7 188 -74 1465 215 3 62 chr1 109982872 109983240 -172210424 + MLT1A2 LTR MaLR 29 374 0 28 79 0 0 chr1 109983615 109983678 -172209986 + AT_rich Low_complexity Low_complexity 1 63 0 540 174 0 0 chr1 109984590 109984719 -172208945 - AluSg/x SINE Alu 0 326 198 192 306 0 16 chr1 109985273 109985335 -172208329 + L3b LINE CR1 1280 1340 -243 468 259 72 30 chr1 109986180 109986346 -172207318 - L2 LINE L2 -15 3298 3126 371 331 195 0 chr1 109986626 109986877 -172206787 - L2 LINE L2 -463 2851 2552 204 315 0 0 chr1 109987285 109987339 -172206325 - MER5B DNA MER1_type 0 178 125 393 191 25 106 chr1 109987635 109987834 -172205830 + MER112 DNA MER1_type 1 183 -77 25 0 0 0 chr1 109988313 109988338 -172205326 + AT_rich Low_complexity Low_complexity 1 25 0 2356 75 0 3 chr1 109988426 109988721 -172204943 - AluSc SINE Alu -15 294 1 474 296 86 45 chr1 109988846 109989113 -172204551 + MLT1J LTR MaLR 1 278 -233 246 193 121 12 chr1 109989160 109989243 -172204421 + MLT1J LTR MaLR 418 509 -2 1896 137 19 86 chr1 109990702 109991061 -172202603 - MER1B DNA MER1_type 0 337 3 28 29 0 0 chr1 109991719 109991754 -172201910 + AT_rich Low_complexity Low_complexity 1 35 0 3145 301 89 24 chr1 109992406 109993644 -172200020 + HERV16 LTR ERVL 1688 3005 -1991 521 249 58 40 chr1 109993730 109993903 -172199761 - MIR SINE MIR -29 233 58 22 88 0 0 chr1 109994353 109994410 -172199254 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr1 109996563 109996586 -172197078 + AT_rich Low_complexity Low_complexity 1 23 0 2327 166 14 2 chr1 109996711 109997150 -172196514 - L1PA10 LINE L1 -2997 3149 2706 13616 110 12 27 chr1 109997163 109999029 -172194635 + L1PA10 LINE L1 3139 5031 -1136 2754 13 0 3 chr1 109999029 109999339 -172194325 + AluY SINE Alu 1 309 -2 13616 110 12 27 chr1 109999339 109999663 -172194001 + L1PA10 LINE L1 5031 5358 -809 1750 171 0 0 chr1 109999663 109999943 -172193721 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr1 109999951 109999975 -172193689 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 13616 110 12 27 chr1 109999975 110000821 -172192843 + L1PA10 LINE L1 5365 6167 0 188 103 51 0 chr1 110001322 110001361 -172192303 + A-rich Low_complexity Low_complexity 5 45 0 228 281 18 0 chr1 110002083 110002140 -172191524 + L2 LINE L2 3255 3312 -1 812 76 124 21 chr1 110003103 110003248 -172190416 - L1MA4 LINE L1 0 6300 6141 23 33 0 0 chr1 110003876 110003906 -172189758 + AT_rich Low_complexity Low_complexity 1 30 0 217 257 0 14 chr1 110004852 110004922 -172188742 + (TA)n Simple_repeat Simple_repeat 2 70 0 189 213 0 0 chr1 110005229 110005276 -172188388 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 2470 60 0 3 chr1 110005691 110005993 -172187671 + AluY SINE Alu 8 308 -3 319 276 315 4 chr1 110007134 110007366 -172186298 + L2 LINE L2 2195 2498 -816 1626 212 103 60 chr1 110007367 110008075 -172185589 + MER97a DNA MER1_type? 40 893 -1 512 268 35 61 chr1 110008096 110008294 -172185370 + L2 LINE L2 3120 3312 -1 2180 126 7 0 chr1 110008523 110008833 -172184831 + AluSx SINE Alu 1 312 0 340 299 40 40 chr1 110009019 110009193 -172184471 - L2 LINE L2 -1005 2309 2136 191 298 18 0 chr1 110011529 110011586 -172182078 + MIR SINE MIR 56 113 -95 215 246 0 18 chr1 110013582 110013639 -172180025 - MIR SINE MIR -126 136 81 1812 152 22 4 chr1 110015470 110015785 -172177879 - AluSx SINE Alu 0 320 1 21 0 0 0 chr1 110016359 110016380 -172177284 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 110017082 110017105 -172176559 + AT_rich Low_complexity Low_complexity 1 23 0 2223 94 0 7 chr1 110017900 110018197 -172175467 - AluSc SINE Alu -14 295 1 774 279 64 70 chr1 110020386 110020846 -172172818 + MLT1H LTR MaLR 51 547 -2 213 39 0 0 chr1 110021009 110021035 -172172629 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1362 142 67 12 chr1 110021050 110021290 -172172374 - AluSx SINE Alu -39 273 21 359 252 41 75 chr1 110023390 110023537 -172170127 - MER20B DNA MER1_type -640 143 2 1844 115 90 7 chr1 110024467 110024755 -172168909 - AluSx SINE Alu 0 312 1 235 287 93 62 chr1 110024757 110024886 -172168778 - MIR SINE MIR -16 246 114 2447 168 15 17 chr1 110024923 110025394 -172168270 + L1MC3 LINE L1 7316 7785 0 * 2970 212 39 43 chr1 110025390 110026116 -172167548 + L1MC/D LINE L1 4457 5177 -997 1682 184 0 3 chr1 110026116 110026443 -172167221 - AluJb SINE Alu 0 326 1 2970 212 39 43 chr1 110026443 110026697 -172166967 + L1MC/D LINE L1 5177 5431 -743 1012 229 33 0 chr1 110026802 110027016 -172166648 - L1MC3 LINE L1 -483 7302 7082 472 261 68 23 chr1 110027009 110027273 -172166391 - L1M4 LINE L1 -1686 4460 4185 * 219 232 87 0 chr1 110028246 110028315 -172165349 - MIR SINE MIR -58 204 130 413 252 75 54 chr1 110028362 110028509 -172165155 - MIR SINE MIR -40 222 73 196 184 0 26 chr1 110031433 110031471 -172162193 + L2 LINE L2 3269 3305 -8 23 0 0 0 chr1 110032286 110032309 -172161355 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr1 110032389 110032425 -172161239 + AT_rich Low_complexity Low_complexity 1 36 0 589 224 238 11 chr1 110032449 110032642 -172161022 + L1M4c LINE L1 2332 2480 -3902 217 50 25 25 chr1 110032642 110032682 -172160982 + (TA)n Simple_repeat Simple_repeat 1 40 0 589 224 238 11 chr1 110032682 110032839 -172160825 + L1M4c LINE L1 2480 2761 -3621 22 56 0 0 chr1 110033770 110033806 -172159858 + AT_rich Low_complexity Low_complexity 1 36 0 40 49 0 0 chr1 110033834 110033895 -172159769 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr1 110034416 110034450 -172159214 + AT_rich Low_complexity Low_complexity 1 34 0 647 291 42 25 chr1 110034874 110035111 -172158553 + MIR SINE MIR 1 241 -21 710 168 120 18 chr1 110035173 110035340 -172158324 - MER3 DNA MER1_type -6 203 20 845 227 63 0 chr1 110035345 110035583 -172158081 + MER63 DNA MER1_type 810 1062 0 21 0 0 0 chr1 110036320 110036341 -172157323 + AT_rich Low_complexity Low_complexity 1 21 0 308 265 110 44 chr1 110036551 110036687 -172156977 - MIR SINE MIR 0 262 118 7321 22 9 1 chr1 110036746 110037614 -172156050 - L1PA4 LINE L1 0 6155 5281 22 0 0 0 chr1 110037737 110037759 -172155905 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 110037821 110037842 -172155822 + AT_rich Low_complexity Low_complexity 1 21 0 3339 170 40 30 chr1 110037957 110038648 -172155016 - L1MC1 LINE L1 -100 6233 5463 1069 165 97 91 chr1 110038656 110038911 -172154753 + MLT1A1 LTR MaLR 9 268 -97 2642 16 0 0 chr1 110038911 110039216 -172154448 - L1PA2 LINE L1 -5 6150 5846 1069 165 97 91 chr1 110039216 110039312 -172154352 + MLT1A1 LTR MaLR 268 362 -3 2298 205 26 36 chr1 110039312 110039627 -172154037 - L1MC1 LINE L1 -752 5394 5077 613 198 25 8 chr1 110039627 110039748 -172153916 - FLAM_A SINE Alu -10 123 1 2298 205 26 36 chr1 110039748 110040159 -172153505 - L1MC1 LINE L1 -1069 5077 4756 399 21 0 0 chr1 110040952 110041000 -172152664 + (CA)n Simple_repeat Simple_repeat 2 49 0 184 286 95 0 chr1 110041044 110041107 -172152557 + MIR SINE MIR 46 114 -148 480 338 168 28 chr1 110041137 110041744 -172151920 - L2 LINE L2 -267 3046 2353 1514 132 0 0 chr1 110041750 110041970 -172151694 + AluSg/x SINE Alu 85 304 -8 600 141 0 51 chr1 110041977 110042133 -172151531 + (GAAA)n Simple_repeat Simple_repeat 1 148 0 313 45 68 0 chr1 110042133 110042177 -172151487 + GA-rich Low_complexity Low_complexity 5 51 0 1326 340 92 14 chr1 110042180 110042965 -172150699 - L2 LINE L2 -947 2367 1522 838 204 0 13 chr1 110043108 110043265 -172150399 - FAM SINE Alu -13 172 18 198 150 0 0 chr1 110043321 110043361 -172150303 + (A)n Simple_repeat Simple_repeat 1 40 0 900 239 0 63 chr1 110044066 110044304 -172149360 + MER58A DNA MER1_type 1 223 -1 23 68 0 0 chr1 110045357 110045401 -172148263 + AT_rich Low_complexity Low_complexity 1 44 0 243 374 12 0 chr1 110045793 110045959 -172147705 + (TA)n Simple_repeat Simple_repeat 2 169 0 261 268 37 0 chr1 110046927 110047009 -172146655 + (CATA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr1 110048121 110048143 -172145521 + AT_rich Low_complexity Low_complexity 1 22 0 1861 115 4 0 chr1 110048285 110048555 -172145109 + AluSq SINE Alu 32 302 -11 27 49 0 0 chr1 110049021 110049062 -172144602 + AT_rich Low_complexity Low_complexity 1 41 0 308 184 37 6 chr1 110049492 110049655 -172144009 + (TA)n Simple_repeat Simple_repeat 1 168 0 2215 153 117 16 chr1 110050207 110050350 -172143314 - L1MA6 LINE L1 -1 6299 6172 1730 100 0 0 chr1 110050350 110050589 -172143075 - AluY SINE Alu -3 308 70 2215 153 117 16 chr1 110050589 110050888 -172142776 - L1MA6 LINE L1 -128 6172 5812 207 0 0 0 chr1 110051069 110051092 -172142572 + (T)n Simple_repeat Simple_repeat 1 23 0 204 97 0 0 chr1 110051105 110051136 -172142528 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 936 235 16 0 chr1 110051644 110051831 -172141833 - MER3 DNA MER1_type -19 190 1 1983 41 0 4 chr1 110052743 110052989 -172140675 + L1PA5 LINE L1 5910 6154 0 435 162 121 0 chr1 110054639 110054738 -172138926 - L1MA3 LINE L1 -205 6100 5990 271 161 16 0 chr1 110054738 110054800 -172138864 + L1MA2 LINE L1 6242 6304 0 371 242 25 57 chr1 110054984 110055141 -172138523 - L2 LINE L2 -61 3252 3101 288 320 47 61 chr1 110055283 110055561 -172138103 + HAL1b LINE L1 318 591 -757 1339 187 90 17 chr1 110056107 110056396 -172137268 - HUERS-P2 LTR ERV1 -2557 531 222 448 250 24 32 chr1 110056427 110056551 -172137113 - HUERS-P2 LTR ERV1 -2961 127 5 3578 166 15 60 chr1 110056554 110057376 -172136288 - LTR1 LTR ERV1 0 785 1 270 307 64 21 chr1 110057495 110057635 -172136029 + MIR SINE MIR 100 245 -17 280 374 9 9 chr1 110058426 110058533 -172135131 + L2 LINE L2 3158 3264 -8 22 0 0 0 chr1 110058846 110058868 -172134796 + AT_rich Low_complexity Low_complexity 1 22 0 246 309 11 0 chr1 110059287 110059381 -172134283 - L1ME LINE L1 -471 5691 5597 1146 133 242 32 chr1 110059468 110059716 -172133948 - AluSg SINE Alu 0 300 1 352 293 93 45 chr1 110060652 110060898 -172132766 + L2 LINE L2 2931 3188 -125 1243 245 39 68 chr1 110061928 110062406 -172131258 - MLT1H LTR MaLR -24 525 3 2052 112 20 10 chr1 110063431 110063727 -172129937 - AluSp SINE Alu -14 299 1 249 233 0 17 chr1 110063851 110063911 -172129753 - MLT1-int LTR MaLR -1283 88 30 286 330 10 0 chr1 110064209 110064312 -172129352 - MER94 DNA DNA -2 132 29 687 169 0 25 chr1 110065586 110065746 -172127918 - L1MA4 LINE L1 -1 6299 6144 508 148 69 0 chr1 110065755 110065856 -172127808 + L1MA4 LINE L1 6024 6131 -169 5767 110 20 8 chr1 110066102 110066458 -172127206 - L1PB1 LINE L1 -6 6145 5795 231 88 0 0 chr1 110066458 110066492 -172127172 + (TG)n Simple_repeat Simple_repeat 2 35 0 5767 110 20 8 chr1 110066492 110067016 -172126648 - L1PB1 LINE L1 -356 5795 5254 249 33 0 0 chr1 110067742 110067772 -172125892 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 282 29 0 0 chr1 110067771 110067806 -172125858 + (CA)n Simple_repeat Simple_repeat 1 35 0 1779 173 27 0 chr1 110069826 110070161 -172123503 + L1MC3 LINE L1 7423 7766 -19 234 91 0 0 chr1 110070522 110070555 -172123109 + (CA)n Simple_repeat Simple_repeat 2 34 0 339 246 22 8 chr1 110070819 110070953 -172122711 - LTR37B LTR ERV1 0 468 333 1267 209 74 20 chr1 110070959 110071310 -172122354 + L1M4 LINE L1 3530 4100 -2046 1145 262 78 62 chr1 110071310 110071381 -172122283 - MLT2B1 LTR ERVL 0 520 452 528 16 0 0 chr1 110071381 110071442 -172122222 + (TG)n Simple_repeat Simple_repeat 1 61 0 1145 262 78 62 chr1 110071442 110071882 -172121782 - MLT2B1 LTR ERVL -68 452 1 1267 209 74 20 chr1 110071882 110071976 -172121688 + L1M4 LINE L1 4100 4188 -1958 369 162 0 0 chr1 110071977 110072045 -172121619 + GA-rich Low_complexity Low_complexity 2 69 0 3111 226 31 12 chr1 110072045 110072887 -172120777 + L1M4 LINE L1 4152 5009 -1137 627 216 32 42 chr1 110072885 110073075 -172120589 + L1MB8 LINE L1 5986 6173 -5 * 748 245 30 87 chr1 110073075 110073443 -172120221 - LTR37B LTR ERV1 -116 352 6 211 261 0 0 chr1 110073736 110073782 -172119882 + MIR SINE MIR 67 112 -96 * 272 163 0 0 chr1 110073771 110073820 -172119844 - MIR SINE MIR -78 184 136 283 259 35 52 chr1 110073849 110073965 -172119699 + MIR SINE MIR 120 233 -29 * 418 242 32 16 chr1 110073932 110074056 -172119608 + MIR SINE MIR 137 262 0 227 353 67 8 chr1 110074204 110074323 -172119341 + MIR SINE MIR 20 145 -117 431 270 36 0 chr1 110075447 110075558 -172118106 + MIR SINE MIR 148 262 0 568 308 104 64 chr1 110075777 110076351 -172117313 + L2 LINE L2 1243 1845 -1469 1243 225 108 15 chr1 110076351 110076693 -172116971 + MLT1A2 LTR MaLR 1 374 0 568 308 104 64 chr1 110076693 110076741 -172116923 + L2 LINE L2 1845 1890 -1424 570 258 97 65 chr1 110076751 110077030 -172116634 - L2 LINE L2 -95 3218 2931 28 29 0 0 chr1 110077287 110077322 -172116342 + AT_rich Low_complexity Low_complexity 1 35 0 890 259 80 9 chr1 110080689 110081014 -172112650 + L1M4 LINE L1 2481 2828 -3318 810 248 0 10 chr1 110081033 110081239 -172112425 - L1ME LINE L1 -641 5521 5318 4820 232 39 34 chr1 110081252 110083500 -172110164 - L1MC1 LINE L1 -11 6322 4067 32 26 0 0 chr1 110083518 110083557 -172110107 + AT_rich Low_complexity Low_complexity 1 39 0 292 127 15 38 chr1 110083573 110083642 -172110022 - L1ME LINE L1 -550 5616 5555 * 410 169 142 14 chr1 110083634 110083782 -172109882 - L1MC1 LINE L1 -3133 3013 2847 546 298 115 14 chr1 110083782 110083990 -172109674 - L2 LINE L2 -427 2887 2659 245 253 25 63 chr1 110084004 110084083 -172109581 - MER5B DNA MER1_type -1 177 102 432 290 44 71 chr1 110084210 110084393 -172109271 - L2 LINE L2 -690 2624 2447 813 310 93 13 chr1 110084498 110084797 -172108867 - L2 LINE L2 -2505 809 472 2516 59 0 3 chr1 110084797 110085102 -172108562 + AluY SINE Alu 1 304 -7 813 310 93 13 chr1 110085102 110085179 -172108485 - L2 LINE L2 -2842 472 403 184 407 62 17 chr1 110085374 110085551 -172108113 + L2 LINE L2 2521 2705 -609 213 318 45 0 chr1 110086104 110086170 -172107494 + L2 LINE L2 3190 3258 -14 24 32 0 0 chr1 110086662 110086693 -172106971 + AT_rich Low_complexity Low_complexity 1 31 0 235 304 108 0 chr1 110086996 110087098 -172106566 + L2 LINE L2 3141 3253 -19 402 313 45 0 chr1 110087694 110087873 -172105791 - L1ME LINE L1 -1219 4927 4741 701 301 87 55 chr1 110088128 110088827 -172104837 + L1MEd LINE L1 162 837 -5473 2043 82 0 41 chr1 110088827 110089118 -172104546 + AluY SINE Alu 1 279 -32 411 38 0 0 chr1 110089118 110089171 -172104493 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 701 301 87 55 chr1 110089171 110089830 -172103834 + L1MEd LINE L1 836 1592 -4718 411 56 0 0 chr1 110090266 110090320 -172103344 + (TG)n Simple_repeat Simple_repeat 2 55 0 326 287 120 5 chr1 110090323 110090539 -172103125 - L1MB8 LINE L1 -10 6168 5928 180 0 0 0 chr1 110090604 110090624 -172103040 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 192 40 0 0 chr1 110091137 110091162 -172102502 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 167 0 0 chr1 110091194 110091236 -172102428 + (CATA)n Simple_repeat Simple_repeat 1 42 0 245 281 0 0 chr1 110094342 110094399 -172099265 + CT-rich Low_complexity Low_complexity 2 58 0 284 240 177 0 chr1 110094685 110094781 -172098883 + LTR16A LTR ERVL 325 437 -13 281 306 108 19 chr1 110094792 110094949 -172098715 - MER5B DNA MER1_type -5 173 3 269 328 50 116 chr1 110095053 110095535 -172098129 - L2 LINE L2 0 3272 2823 434 291 7 28 chr1 110096482 110096623 -172097041 + G-rich Low_complexity Low_complexity 4 141 0 410 285 30 30 chr1 110096556 110096721 -172096943 + GA-rich Low_complexity Low_complexity 5 169 0 * 205 204 23 0 chr1 110097041 110097085 -172096579 + (TATG)n Simple_repeat Simple_repeat 1 45 0 439 335 77 0 chr1 110097166 110097336 -172096328 + MIR SINE MIR 3 185 -77 2101 106 0 13 chr1 110097737 110098040 -172095624 + AluSg SINE Alu 1 299 -11 22 56 0 0 chr1 110098265 110098301 -172095363 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 110100312 110100335 -172093329 + AT_rich Low_complexity Low_complexity 1 23 0 209 271 17 17 chr1 110100862 110100921 -172092743 - L2 LINE L2 -62 3251 3193 214 260 0 0 chr1 110101152 110101202 -172092462 + (CA)n Simple_repeat Simple_repeat 2 51 0 30 27 0 0 chr1 110101493 110101530 -172092134 + AT_rich Low_complexity Low_complexity 1 37 0 1839 155 0 7 chr1 110102205 110102496 -172091168 - AluSx SINE Alu -23 289 1 24 0 0 0 chr1 110102589 110102613 -172091051 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr1 110103345 110103375 -172090289 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 110103826 110103850 -172089814 + AT_rich Low_complexity Low_complexity 1 24 0 757 222 185 21 chr1 110104276 110104465 -172089199 - MER8 DNA MER2_type -17 222 3 276 149 0 0 chr1 110104832 110104879 -172088785 + (TA)n Simple_repeat Simple_repeat 2 48 0 257 226 0 43 chr1 110104888 110104981 -172088683 - L1MC4 LINE L1 -1339 6703 6615 288 0 0 0 chr1 110104982 110105014 -172088650 + (TG)n Simple_repeat Simple_repeat 2 33 0 * 315 0 0 0 chr1 110105013 110105048 -172088616 + (TA)n Simple_repeat Simple_repeat 2 36 0 1167 178 87 45 chr1 110105048 110105325 -172088339 + AluJo SINE Alu 1 292 -10 1910 126 28 0 chr1 110105325 110105611 -172088053 - AluSx SINE Alu -18 294 1 430 242 8 25 chr1 110105839 110105959 -172087705 - MIR SINE MIR -13 249 132 292 258 0 0 chr1 110105959 110106021 -172087643 - MIR SINE MIR -89 173 112 364 244 82 30 chr1 110107381 110107516 -172086148 - L2 LINE L2 -1 3312 3171 290 333 0 0 chr1 110107618 110107702 -172085962 + L2 LINE L2 3230 3313 0 2418 213 8 4 chr1 110107845 110108315 -172085349 + MER70A LTR ERVL 1 472 0 756 251 65 0 chr1 110108463 110108662 -172085002 + MIR SINE MIR 48 259 -3 239 260 202 0 chr1 110108754 110108858 -172084806 + MIR SINE MIR 133 257 -5 280 325 31 55 chr1 110109591 110109754 -172083910 + L2 LINE L2 2901 3059 -213 372 315 221 17 chr1 110109872 110110221 -172083443 - L2 LINE L2 0 3272 2853 200 250 0 0 chr1 110110272 110110312 -172083352 + L2 LINE L2 3233 3272 0 296 321 38 61 chr1 110110939 110111070 -172082594 + MIR3 SINE MIR 55 182 -26 312 340 154 0 chr1 110111634 110111790 -172081874 + MIR SINE MIR 32 211 -51 214 397 0 0 chr1 110112541 110112619 -172081045 - L2 LINE L2 -4 3268 3191 893 210 84 65 chr1 110113110 110113420 -172080244 - MER2 DNA MER2_type 0 345 30 366 276 18 84 chr1 110114172 110114272 -172079392 + L1MEc LINE L1 960 1038 -5358 3720 162 37 9 chr1 110114272 110114952 -172078712 + L1PA15 LINE L1 5467 6165 0 366 276 18 84 chr1 110114952 110115076 -172078588 + L1MEc LINE L1 1038 1169 -5227 462 302 77 25 chr1 110115588 110115823 -172077841 + MIR SINE MIR 6 252 -10 369 350 28 21 chr1 110115941 110116084 -172077580 + L2 LINE L2 3125 3268 -4 186 355 118 9 chr1 110116299 110116409 -172077255 + L2 LINE L2 3183 3304 -9 363 210 0 0 chr1 110216965 110217027 -171976637 - AluS SINE Alu -246 62 1 367 285 116 33 chr1 110217968 110218327 -171975337 - L1M2 LINE L1 -745 1763 1385 399 244 68 51 chr1 110218354 110218588 -171975076 - L1MEd LINE L1 -4910 1209 972 280 321 71 9 chr1 110218744 110218856 -171974808 + L2 LINE L2 3153 3271 -1 265 324 86 50 chr1 110218927 110219066 -171974598 + MER5A DNA MER1_type 1 144 -45 1461 181 44 4 chr1 110220103 110220410 -171973254 - AluSx SINE Alu 0 318 1 286 270 73 58 chr1 110221213 110221350 -171972314 - L2 LINE L2 -7 3306 3168 21 57 0 0 chr1 110221962 110221997 -171971667 + AT_rich Low_complexity Low_complexity 1 35 0 189 103 0 52 chr1 110223605 110223663 -171970001 + (TTTTTA)n Simple_repeat Simple_repeat 4 58 0 221 362 112 0 chr1 110223815 110223931 -171969733 - L2 LINE L2 -2 3270 3142 21 0 0 0 chr1 110224642 110224663 -171969001 + AT_rich Low_complexity Low_complexity 1 21 0 296 358 73 33 chr1 110224924 110225075 -171968589 + L2 LINE L2 3116 3272 0 246 391 35 0 chr1 110225204 110225401 -171968263 + L2 LINE L2 2553 2756 -558 182 351 68 0 chr1 110225480 110225554 -171968110 + L2 LINE L2 3234 3312 -1 224 226 16 48 chr1 110225862 110225924 -171967740 + L3 LINE CR1 1516 1575 -2 531 226 10 0 chr1 110226093 110226195 -171967469 - L2 LINE L2 -1 3312 3210 1381 149 0 9 chr1 110226342 110226557 -171967107 + AluJo SINE Alu 86 298 -14 611 270 98 20 chr1 110226831 110227063 -171966601 + MIR SINE MIR 3 248 -14 729 291 33 70 chr1 110228471 110228801 -171964863 + L1ME LINE L1 5476 5793 -377 325 303 61 30 chr1 110229317 110229449 -171964215 - L3b LINE CR1 -136 1447 1312 707 222 0 7 chr1 110230582 110230726 -171962938 - FRAM SINE Alu -30 146 4 22 35 0 0 chr1 110230870 110230899 -171962765 + AT_rich Low_complexity Low_complexity 1 29 0 538 299 74 22 chr1 110231926 110232368 -171961296 + L1ME4a LINE L1 5396 5859 -262 23 33 0 0 chr1 110232925 110232955 -171960709 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 110236350 110236371 -171957293 + AT_rich Low_complexity Low_complexity 1 21 0 303 323 67 36 chr1 110237182 110237377 -171956287 + L2 LINE L2 1905 2105 -1209 2217 120 0 0 chr1 110237458 110237766 -171955898 + AluSg SINE Alu 1 308 -2 248 293 86 9 chr1 110238551 110238667 -171954997 + MIR SINE MIR 112 236 -26 225 0 0 0 chr1 110238667 110238692 -171954972 + (CA)n Simple_repeat Simple_repeat 2 26 0 459 301 43 39 chr1 110238833 110239089 -171954575 + L2 LINE L2 2824 3080 -192 402 278 49 35 chr1 110239184 110239328 -171954336 - MIR SINE MIR 0 262 117 1074 153 25 0 chr1 110239724 110239920 -171953744 + L1MA5 LINE L1 6095 6295 -5 1203 249 37 37 chr1 110240407 110240733 -171952931 + MER102b DNA MER1_type 1 326 -15 207 69 0 0 chr1 110240823 110240852 -171952812 + (A)n Simple_repeat Simple_repeat 1 29 0 2216 155 11 35 chr1 110242611 110242657 -171951007 + L1MB1 LINE L1 5445 5491 -677 1885 154 0 3 chr1 110242657 110242950 -171950714 + AluJb SINE Alu 1 292 -20 2216 155 11 35 chr1 110242950 110242962 -171950702 + L1MB1 LINE L1 5491 5502 -666 207 0 0 0 chr1 110242962 110242985 -171950679 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2216 155 11 35 chr1 110242985 110243358 -171950306 + L1MB1 LINE L1 5502 5867 -301 833 148 32 0 chr1 110243386 110243541 -171950123 + L1MB1 LINE L1 6008 6167 -1 2227 115 0 3 chr1 110244842 110245204 -171948460 + AluSx SINE Alu 1 361 0 433 257 173 26 chr1 110245478 110245704 -171947960 + MIR SINE MIR 2 260 -2 2127 111 0 10 chr1 110246206 110246503 -171947161 - AluSx SINE Alu -18 294 1 785 205 13 13 chr1 110248873 110249029 -171944635 + FRAM SINE Alu 1 156 -20 526 303 67 22 chr1 110249495 110249762 -171943902 + L2 LINE L2 3035 3313 0 290 333 109 7 chr1 110250898 110251036 -171942628 - MIR3 SINE MIR -50 158 7 287 254 58 51 chr1 110251037 110251175 -171942489 + MIR SINE MIR 110 248 -14 246 247 37 12 chr1 110252027 110252108 -171941556 + MIR3 SINE MIR 111 193 -15 26 50 0 0 chr1 110253153 110253193 -171940471 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr1 110253243 110253268 -171940396 + AT_rich Low_complexity Low_complexity 1 25 0 24 67 0 0 chr1 110253306 110253351 -171940313 + AT_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr1 110253403 110253441 -171940223 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 110253623 110253647 -171940017 + AT_rich Low_complexity Low_complexity 1 24 0 31 76 0 0 chr1 110254722 110254788 -171938876 + AT_rich Low_complexity Low_complexity 1 66 0 363 204 92 0 chr1 110256191 110256289 -171937375 - LTR9B LTR ERV1 -93 551 445 402 21 0 0 chr1 110257020 110257067 -171936597 + (CA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr1 110257190 110257215 -171936449 + AT_rich Low_complexity Low_complexity 1 25 0 665 228 99 0 chr1 110257530 110257701 -171935963 - MER5A DNA MER1_type 0 189 2 279 245 106 21 chr1 110258285 110258379 -171935285 + L2 LINE L2 3196 3297 -16 22 0 0 0 chr1 110258691 110258713 -171934951 + AT_rich Low_complexity Low_complexity 1 22 0 1055 69 7 0 chr1 110259252 110259397 -171934267 + (GAAA)n Simple_repeat Simple_repeat 4 149 0 220 234 0 0 chr1 110259403 110259450 -171934214 + A-rich Low_complexity Low_complexity 1 47 0 1881 184 9 9 chr1 110261820 110262163 -171931501 + MER7A DNA MER2_type 2 342 -4 23 33 0 0 chr1 110262430 110262460 -171931204 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 110264348 110264371 -171929293 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 110264767 110264813 -171928851 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr1 110265085 110265120 -171928544 + AT_rich Low_complexity Low_complexity 1 35 0 283 173 58 0 chr1 110265157 110265209 -171928455 - L2 LINE L2 -8 3305 3251 245 376 106 6 chr1 110265822 110265992 -171927672 - MIR3 SINE MIR -5 203 17 315 0 0 0 chr1 110266303 110266338 -171927326 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr1 110270374 110270401 -171923263 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 384 200 0 0 chr1 110271424 110271504 -171922160 + (CTG)n Simple_repeat Simple_repeat 3 82 0 23 0 0 0 chr1 110272844 110272867 -171920797 + AT_rich Low_complexity Low_complexity 1 23 0 441 0 0 0 chr1 110273388 110273437 -171920227 + (CA)n Simple_repeat Simple_repeat 1 49 0 350 204 11 0 chr1 110274314 110274402 -171919262 + CT-rich Low_complexity Low_complexity 1 89 0 198 0 0 0 chr1 110278382 110278404 -171915260 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 522 43 0 0 chr1 110278403 110278472 -171915192 + (GA)n Simple_repeat Simple_repeat 1 69 0 264 122 0 0 chr1 110279935 110279976 -171913688 + (CA)n Simple_repeat Simple_repeat 1 41 0 724 297 5 14 chr1 110280957 110281179 -171912485 - MIR SINE MIR 0 262 43 194 320 141 16 chr1 110281365 110281493 -171912171 - MIR3 SINE MIR -61 147 4 587 271 8 26 chr1 110282454 110282636 -171911028 - MIR3 SINE MIR -11 197 24 299 252 76 92 chr1 110282683 110282814 -171910850 - L2 LINE L2 -2 3311 3183 293 325 143 30 chr1 110286985 110287188 -171906476 - MIR SINE MIR -18 244 19 256 264 0 0 chr1 110287220 110287273 -171906391 - MIR SINE MIR -12 250 198 207 154 0 0 chr1 110287582 110287607 -171906057 + (TTCA)n Simple_repeat Simple_repeat 3 30 -11 2250 107 0 0 chr1 110287607 110287905 -171905759 - AluSc SINE Alu -11 298 1 207 154 0 0 chr1 110287905 110287918 -171905746 + (TTCA)n Simple_repeat Simple_repeat 29 41 0 192 302 38 0 chr1 110288268 110288321 -171905343 + L2 LINE L2 3246 3300 -13 243 0 0 0 chr1 110288321 110288348 -171905316 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2122 96 0 24 chr1 110289317 110289643 -171904021 - AluSx SINE Alu 0 319 1 216 182 0 0 chr1 110290164 110290208 -171903456 + A-rich Low_complexity Low_complexity 4 47 0 261 268 52 10 chr1 110290750 110290847 -171902817 - L1MC4a LINE L1 -1 7807 7707 279 0 0 0 chr1 110290899 110290930 -171902734 + (TG)n Simple_repeat Simple_repeat 2 32 0 337 294 39 90 chr1 110291032 110291389 -171902275 - HAL1 LINE L1 -1160 1347 1009 2253 72 7 10 chr1 110292534 110292826 -171900838 - AluSg SINE Alu -19 291 1 23 0 0 0 chr1 110294004 110294027 -171899637 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr1 110294511 110294546 -171899118 + (CA)n Simple_repeat Simple_repeat 1 35 0 292 133 0 50 chr1 110295174 110295234 -171898430 + L2 LINE L2 3257 3313 0 24 32 0 0 chr1 110296740 110296771 -171896893 + AT_rich Low_complexity Low_complexity 1 31 0 266 248 82 68 chr1 110296835 110297041 -171896623 - L2 LINE L2 -55 3258 3050 186 218 73 0 chr1 110297538 110297593 -171896071 - MIR SINE MIR -97 165 107 219 218 58 23 chr1 110297904 110297991 -171895673 - MIR SINE MIR -103 159 70 386 246 14 63 chr1 110300919 110301061 -171892603 - MIR SINE MIR -55 207 73 249 26 0 0 chr1 110301746 110301784 -171891880 + L1PA3 LINE L1 6118 6155 0 341 384 18 24 chr1 110301784 110301948 -171891716 - MIR3 SINE MIR -43 165 3 288 172 0 12 chr1 110301960 110302030 -171891634 - MLT1H LTR MaLR 0 542 483 22 0 0 0 chr1 110302967 110302989 -171890675 + AT_rich Low_complexity Low_complexity 1 22 0 610 309 86 44 chr1 110303044 110303429 -171890235 - MLT1H LTR MaLR -103 446 46 312 27 0 0 chr1 110303697 110303748 -171889916 + (TG)n Simple_repeat Simple_repeat 1 88 0 312 27 0 0 chr1 110303748 110303785 -171889879 + (TG)n Simple_repeat Simple_repeat 2 38 0 420 271 18 72 chr1 110304203 110304369 -171889295 - MIR SINE MIR -47 215 59 269 198 0 119 chr1 110304812 110304913 -171888751 + MER104 DNA Tc2 10 98 -82 540 252 8 0 chr1 110304955 110305074 -171888590 - MIR SINE MIR -103 159 40 211 271 0 0 chr1 110305857 110305905 -171887759 + (CA)n Simple_repeat Simple_repeat 1 48 0 2723 129 35 7 chr1 110306174 110306608 -171887056 - Tigger2 DNA MER2_type 0 2718 2273 292 197 45 30 chr1 110306598 110306664 -171887000 - Tigger2 DNA MER2_type -2649 69 3 * 566 246 45 17 chr1 110306665 110306844 -171886820 - L1MC/D LINE L1 -1997 5811 5628 365 247 0 11 chr1 110306874 110306963 -171886701 - L1MC/D LINE L1 -2287 5521 5434 297 329 112 3 chr1 110307268 110307563 -171886101 - L1MC/D LINE L1 -1071 5075 4749 1038 167 60 18 chr1 110307575 110307857 -171885807 + MER33 DNA MER1_type 31 324 0 464 287 97 31 chr1 110307950 110308497 -171885167 - L1MC/D LINE L1 -1487 4659 4077 239 203 17 0 chr1 110308568 110308627 -171885037 + (CA)n Simple_repeat Simple_repeat 2 61 0 242 204 129 0 chr1 110308680 110308773 -171884891 - L1MC/D LINE L1 -2201 3945 3841 26 0 0 0 chr1 110309388 110309414 -171884250 + AT_rich Low_complexity Low_complexity 1 26 0 629 342 91 44 chr1 110310013 110310539 -171883125 + L2 LINE L2 2310 2860 -454 309 217 87 61 chr1 110311099 110311214 -171882450 + MER5B DNA MER1_type 17 134 -44 1556 151 25 32 chr1 110311428 110311706 -171881958 + AluJb SINE Alu 30 305 -7 240 245 32 11 chr1 110311728 110311822 -171881842 - L1MC4 LINE L1 -1333 6709 6614 397 156 52 7 chr1 110311827 110311962 -171881702 + (TA)n Simple_repeat Simple_repeat 1 141 0 307 374 29 0 chr1 110312082 110312221 -171881443 + L2 LINE L2 3167 3309 -4 249 274 53 68 chr1 110312707 110312897 -171880767 - L2 LINE L2 -1596 1718 1532 239 272 81 23 chr1 110314104 110314277 -171879387 - L1ME LINE L1 -249 5872 5690 364 273 87 27 chr1 110314303 110314453 -171879211 + MIR SINE MIR 31 189 -73 283 349 0 0 chr1 110314466 110314552 -171879112 - L2 LINE L2 -3 3310 3225 * 368 284 105 19 chr1 110314541 110314703 -171878961 - L2 LINE L2 -1158 2156 1981 876 269 25 49 chr1 110314753 110315077 -171878587 + L1MC4a LINE L1 5566 5881 -1927 1784 118 56 52 chr1 110315178 110315466 -171878198 + AluSg1 SINE Alu 1 289 -20 415 188 24 0 chr1 110315516 110315601 -171878063 - L2 LINE L2 -1316 1998 1912 369 238 59 79 chr1 110315620 110315822 -171877842 - L2 LINE L2 -1522 1792 1595 233 253 42 42 chr1 110316030 110316125 -171877539 - MIR SINE MIR -45 217 123 350 403 8 0 chr1 110316188 110316317 -171877347 - L2 LINE L2 -6 3266 3137 2005 184 9 11 chr1 110316432 110316795 -171876869 + MSTD LTR MaLR 3 341 -34 38 39 0 0 chr1 110316875 110316927 -171876737 + AT_rich Low_complexity Low_complexity 1 52 0 1817 172 0 7 chr1 110317169 110317471 -171876193 - AluSx SINE Alu -12 300 1 313 358 71 25 chr1 110318280 110318520 -171875144 + L2 LINE L2 2950 3200 -72 2039 147 0 13 chr1 110318567 110318880 -171874784 + AluSx SINE Alu 4 312 0 619 169 16 16 chr1 110318886 110319010 -171874654 + FLAM_A SINE Alu 1 124 -9 1767 205 74 0 chr1 110320948 110321314 -171872350 - MSTD LTR MaLR -3 393 1 2183 123 7 3 chr1 110321471 110321780 -171871884 - AluSq SINE Alu -3 310 1 1702 170 3 7 chr1 110321780 110322061 -171871603 - AluSx SINE Alu -18 294 14 431 250 45 55 chr1 110322132 110322352 -171871312 + L1MA9 LINE L1 6015 6232 -80 183 306 20 0 chr1 110322641 110322690 -171870974 + L2 LINE L2 3210 3259 -13 198 0 0 0 chr1 110322690 110322712 -171870952 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 182 37 37 0 chr1 110323186 110323213 -171870451 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 406 307 22 15 chr1 110324260 110324397 -171869267 - MIR SINE MIR -123 139 2 299 225 101 54 chr1 110325423 110325552 -171868112 + MIR3 SINE MIR 12 146 -62 304 317 16 57 chr1 110326227 110326350 -171867314 + MIR SINE MIR 22 139 -123 265 353 115 0 chr1 110326366 110326488 -171867176 - L2 LINE L2 0 3272 3137 638 311 62 12 chr1 110326706 110326950 -171866714 - MIR SINE MIR -3 259 4 250 250 79 26 chr1 110328696 110328772 -171864892 + L2 LINE L2 3186 3265 -7 189 211 39 19 chr1 110329233 110329285 -171864379 - L2 LINE L2 -214 3058 3006 582 353 93 31 chr1 110330327 110330809 -171862855 + L3 LINE CR1 353 864 -713 331 303 8 57 chr1 110330893 110331015 -171862649 + LTR67 LTR ERVL 102 217 -340 242 278 52 41 chr1 110332227 110332324 -171861340 - L3 LINE CR1 -116 1461 1364 181 414 154 3 chr1 110332624 110332909 -171860755 + L2 LINE L2 2942 3269 -3 332 324 89 40 chr1 110332920 110333145 -171860519 - L3 LINE CR1 -478 1099 864 463 303 93 20 chr1 110333298 110333598 -171860066 - L2 LINE L2 -1174 2140 1819 4643 25 2 4 chr1 110333882 110334538 -171859126 - L1P1 LINE L1 -680 5475 4821 6117 25 0 6 chr1 110334538 110335255 -171858409 + L1PA2 LINE L1 5437 6154 -1 213 267 19 57 chr1 110335294 110335399 -171858265 - L2 LINE L2 -1860 1454 1354 512 348 64 13 chr1 110336750 110336986 -171856678 - MIR SINE MIR -2 260 13 2030 120 0 52 chr1 110337561 110337886 -171855778 + AluSq SINE Alu 1 308 -5 33 0 0 0 chr1 110337886 110337919 -171855745 + AT_rich Low_complexity Low_complexity 1 33 0 410 309 1 0 chr1 110338102 110338227 -171855437 + MIR SINE MIR 15 140 -68 932 169 60 96 chr1 110338672 110338986 -171854678 + MER33 DNA MER1_type 22 324 0 283 326 31 31 chr1 110339473 110339602 -171854062 - MIR SINE MIR -123 139 11 453 261 58 0 chr1 110340116 110340254 -171853410 + MIR SINE MIR 117 262 0 245 256 89 33 chr1 110342992 110343082 -171850582 + MIR SINE MIR 49 143 -119 2109 104 0 0 chr1 110343309 110343587 -171850077 + AluSg SINE Alu 10 287 -23 36 40 0 0 chr1 110345355 110345405 -171848259 + AT_rich Low_complexity Low_complexity 1 50 0 212 356 11 0 chr1 110346022 110346109 -171847555 + MIR3 SINE MIR 108 195 -13 203 152 0 0 chr1 110346324 110346357 -171847307 + (TG)n Simple_repeat Simple_repeat 2 34 0 233 347 10 31 chr1 110347682 110347780 -171845884 - L2 LINE L2 -173 3099 3004 285 170 0 0 chr1 110347837 110347890 -171845774 + L2 LINE L2 3261 3313 0 2112 137 73 15 chr1 110349088 110349430 -171844234 + THE1B LTR MaLR 1 362 -2 32 26 0 0 chr1 110349698 110349737 -171843927 + AT_rich Low_complexity Low_complexity 1 39 0 220 274 97 53 chr1 110349932 110350045 -171843619 + L3 LINE CR1 1186 1303 -274 340 344 48 16 chr1 110350135 110350321 -171843343 + L3 LINE CR1 1312 1503 -74 407 104 0 15 chr1 110350366 110350433 -171843231 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 2051 157 0 0 chr1 110350439 110350751 -171842913 - AluSx SINE Alu 0 312 1 199 224 119 15 chr1 110350753 110350820 -171842844 + MIR SINE MIR 109 182 -80 * 256 304 22 22 chr1 110350795 110350887 -171842777 - MIR SINE MIR -168 94 3 801 254 101 4 chr1 110351021 110351249 -171842415 + MIR SINE MIR 12 261 -1 185 365 0 19 chr1 110351331 110351383 -171842281 - L2 LINE L2 -99 3173 3123 282 29 0 0 chr1 110354475 110354510 -171839154 + (CA)n Simple_repeat Simple_repeat 2 36 0 380 347 126 9 chr1 110355498 110355832 -171837832 + L3 LINE CR1 252 624 -953 447 191 9 48 chr1 110356884 110356989 -171836675 + L2 LINE L2 3168 3268 -4 366 302 54 63 chr1 110357097 110357302 -171836362 - MIR SINE MIR -29 233 31 218 304 59 10 chr1 110357398 110357500 -171836164 - MIR3 SINE MIR -9 199 93 213 330 154 0 chr1 110357749 110357840 -171835824 + L3 LINE CR1 1449 1553 -24 189 234 21 0 chr1 110357809 110357856 -171835808 + MIR3 SINE MIR 150 197 -11 * 259 386 87 8 chr1 110357947 110358074 -171835590 + L2 LINE L2 3126 3262 -10 419 91 0 15 chr1 110359037 110359103 -171834561 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 1556 127 24 8 chr1 110359350 110359603 -171834061 - Tigger2 DNA MER2_type -10 2708 2452 330 194 16 0 chr1 110359664 110359726 -171833938 - Tigger2 DNA MER2_type -1967 751 689 3232 152 23 5 chr1 110359747 110360306 -171833358 - Tigger2 DNA MER2_type -2146 572 4 608 245 117 11 chr1 110361547 110361735 -171831929 + MER58B DNA MER1_type 9 216 -125 410 212 76 34 chr1 110361795 110361913 -171831751 + MER58B DNA MER1_type 219 341 0 186 189 0 0 chr1 110362086 110362123 -171831541 + CT-rich Low_complexity Low_complexity 4 40 0 304 260 20 20 chr1 110363126 110363226 -171830438 + (TAAA)n Simple_repeat Simple_repeat 4 103 0 260 323 0 0 chr1 110363241 110363340 -171830324 - Charlie7 DNA MER1_type -1026 1586 1488 272 325 96 16 chr1 110363420 110363551 -171830113 - Charlie7 DNA MER1_type -2403 209 57 1354 190 27 4 chr1 110363551 110363814 -171829850 - L1PB4 LINE L1 0 6156 5888 272 325 96 16 chr1 110363814 110363870 -171829794 - Charlie7 DNA MER1_type -2555 57 7 1354 176 55 17 chr1 110364336 110364625 -171829039 - L1PA16 LINE L1 0 6166 5867 2903 6 0 0 chr1 110365012 110365330 -171828334 - AluYb8 SINE Alu 0 318 1 763 261 31 10 chr1 110370084 110370279 -171823385 - MIR SINE MIR -63 199 1 7613 182 43 58 chr1 110370962 110372840 -171820824 + L1MC3 LINE L1 5270 7119 -666 1740 189 33 9 chr1 110372840 110373174 -171820490 + MLT2C1 LTR ERVL 1 342 -55 1141 224 9 5 chr1 110373249 110373472 -171820192 + MER8 DNA MER2_type 16 239 0 254 231 13 13 chr1 110373521 110373599 -171820065 + (TA)n Simple_repeat Simple_repeat 1 78 0 344 93 0 20 chr1 110373601 110373659 -171820005 + MLT2C1 LTR ERVL 350 397 0 2991 188 50 26 chr1 110373660 110374214 -171819450 + L1MC3 LINE L1 7116 7690 -95 2627 147 9 9 chr1 110374214 110374676 -171818988 + L1PB3 LINE L1 5686 6147 -7 2991 188 50 26 chr1 110374676 110374775 -171818889 + L1MC3 LINE L1 7690 7785 0 489 200 59 42 chr1 110375304 110375502 -171818162 - L1MDa LINE L1 -3934 2606 2442 2051 164 66 17 chr1 110375623 110376031 -171817633 - MSTA LTR MaLR 0 428 1 1407 257 99 83 chr1 110376240 110377473 -171816191 - L1MDa LINE L1 -4482 2239 987 5299 99 46 19 chr1 110377732 110378556 -171815108 - L1PA13 LINE L1 -1 6162 5317 7442 35 0 0 chr1 110378578 110379724 -171813940 - L1PA4 LINE L1 -3 6152 5007 3740 27 0 0 chr1 110379724 110380165 -171813499 + L1PA4 LINE L1 4570 5010 -1136 1681 161 16 0 chr1 110380167 110380477 -171813187 - L1PA13 LINE L1 -818 5328 5014 * 10044 161 11 9 chr1 110380475 110382271 -171811393 + L1PA13 LINE L1 3246 5044 -1102 384 293 92 35 chr1 110383806 110383980 -171809684 + MIR SINE MIR 54 237 -25 4843 40 20 0 chr1 110385849 110386453 -171807211 + L1PA5 LINE L1 3559 4174 -1972 7049 51 14 0 chr1 110386453 110387796 -171805868 + L1PA5 LINE L1 4799 6153 -1 220 278 97 0 chr1 110388498 110388570 -171805094 + MIR SINE MIR 123 201 -61 314 361 15 8 chr1 110388950 110389080 -171804584 - MER5A DNA MER1_type -18 171 41 24 0 0 0 chr1 110389403 110389427 -171804237 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 110389502 110389524 -171804140 + AT_rich Low_complexity Low_complexity 1 22 0 303 252 142 39 chr1 110390088 110390397 -171803267 - L1M4 LINE L1 -813 5333 4993 456 221 81 85 chr1 110390415 110391313 -171802351 - L1MC4 LINE L1 -63 6103 5278 363 272 0 0 chr1 110391548 110391629 -171802035 - L1MC4 LINE L1 -864 5282 5202 501 48 0 0 chr1 110391632 110391694 -171801970 - AluY SINE Alu -14 295 234 765 206 26 32 chr1 110391705 110391894 -171801770 - L1MC4 LINE L1 -477 7565 7378 1011 25 0 0 chr1 110392037 110392155 -171801509 - L1PA4 LINE L1 -430 5724 5607 3549 31 5 0 chr1 110392155 110392577 -171801087 + L1PA4 LINE L1 5729 6154 -1 23 33 0 0 chr1 110393150 110393180 -171800484 + AT_rich Low_complexity Low_complexity 1 30 0 328 314 85 5 chr1 110393559 110393782 -171799882 - HAL1 LINE L1 -909 1598 1358 404 313 76 55 chr1 110393789 110394118 -171799546 - L1MEd LINE L1 -4888 1231 896 1011 287 82 75 chr1 110394128 110394717 -171798947 + MLT1E LTR MaLR 1 593 0 208 203 8 78 chr1 110394762 110394890 -171798774 + T-rich Low_complexity Low_complexity 4 122 0 25 65 0 0 chr1 110395556 110395602 -171798062 + AT_rich Low_complexity Low_complexity 1 46 0 853 276 72 61 chr1 110396145 110396694 -171796970 + MLT2E LTR ERVL 15 628 0 762 311 137 30 chr1 110396910 110397522 -171796142 - L2 LINE L2 -18 3295 2631 713 302 53 4 chr1 110398469 110398714 -171794950 + MIR SINE MIR 6 262 0 * 2112 315 94 37 chr1 110398705 110399749 -171793915 + L2 LINE L2 608 1724 -1590 2227 116 7 0 chr1 110399749 110400050 -171793614 + AluSx SINE Alu 1 303 -9 2112 315 94 37 chr1 110400050 110400146 -171793518 + L2 LINE L2 1724 1813 -1501 1022 287 62 20 chr1 110400259 110400649 -171793015 + L2 LINE L2 2299 2704 -610 24 32 0 0 chr1 110401978 110402009 -171791655 + AT_rich Low_complexity Low_complexity 1 31 0 337 266 85 18 chr1 110403079 110403283 -171790381 + MIR SINE MIR 6 259 -3 278 298 78 114 chr1 110403704 110403949 -171789715 + L2 LINE L2 3026 3261 -11 180 26 26 51 chr1 110404616 110404655 -171789009 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 298 214 12 12 chr1 110406193 110406277 -171787387 - MER112 DNA MER1_type -95 165 82 327 25 0 0 chr1 110406280 110406320 -171787344 + (TG)n Simple_repeat Simple_repeat 1 40 0 388 254 24 24 chr1 110407293 110407419 -171786245 - LTR16A1 LTR ERVL -2 455 330 186 288 15 15 chr1 110407893 110407959 -171785705 - MIR SINE MIR -16 246 181 21 0 0 0 chr1 110408128 110408149 -171785515 + AT_rich Low_complexity Low_complexity 1 21 0 1588 156 55 31 chr1 110408656 110408983 -171784681 + MER44D DNA MER2_type 3 607 -2 384 292 75 50 chr1 110411201 110411718 -171781946 + L1MC5 LINE L1 7292 7821 -140 384 47 31 16 chr1 110411966 110412030 -171781634 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 421 398 67 12 chr1 110412188 110412530 -171781134 + L2 LINE L2 2909 3269 -3 734 269 16 11 chr1 110414608 110414794 -171778870 + MIR SINE MIR 71 257 -5 256 307 50 50 chr1 110417146 110417286 -171776378 - L2 LINE L2 0 3313 3174 1063 278 128 24 chr1 110417375 110417695 -171775969 - L2 LINE L2 -157 3156 2871 2178 97 0 0 chr1 110417695 110417974 -171775690 - AluSc SINE Alu -28 281 3 1063 278 128 24 chr1 110417974 110418222 -171775442 - L2 LINE L2 -442 2871 2534 2735 254 50 82 chr1 110419214 110420389 -171773275 - L2 LINE L2 -835 2479 1342 21 0 0 0 chr1 110420958 110420979 -171772685 + AT_rich Low_complexity Low_complexity 1 21 0 1233 145 80 33 chr1 110422473 110422766 -171770898 - MER7A DNA MER2_type 0 337 1 180 250 0 0 chr1 110422770 110422818 -171770846 + (TA)n Simple_repeat Simple_repeat 1 48 0 301 212 94 0 chr1 110422979 110423064 -171770600 + L2 LINE L2 1197 1289 -2025 670 269 50 42 chr1 110424306 110424544 -171769120 + MIR SINE MIR 2 241 -21 1151 266 111 16 chr1 110424555 110424935 -171768729 + L2 LINE L2 2898 3313 0 222 265 0 12 chr1 110425190 110425273 -171768391 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 596 259 50 40 chr1 110425562 110425763 -171767901 - MIR SINE MIR 0 262 60 946 153 23 210 chr1 110428108 110428455 -171765209 + MLT1A2 LTR MaLR 3 284 -90 302 214 12 0 chr1 110428455 110428539 -171765125 + GA-rich Low_complexity Low_complexity 4 88 0 21 71 0 0 chr1 110430366 110430408 -171763256 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 110430805 110430826 -171762838 + AT_rich Low_complexity Low_complexity 1 21 0 1794 185 19 64 chr1 110430835 110431256 -171762408 - MER67D LTR ERV1 -66 448 47 483 153 36 9 chr1 110431272 110431383 -171762281 + GA-rich Low_complexity Low_complexity 3 116 0 800 144 11 22 chr1 110431405 110431585 -171762079 + GA-rich Low_complexity Low_complexity 3 180 0 282 125 21 0 chr1 110431599 110431647 -171762017 - MER67D LTR ERV1 -454 60 12 1430 123 50 0 chr1 110431647 110431866 -171761798 - MER30 DNA MER1_type 0 230 1 1583 186 119 65 chr1 110431968 110432446 -171761218 - MLT1D LTR MaLR 0 505 2 4347 113 19 28 chr1 110433721 110434448 -171759216 + L1MA2 LINE L1 5584 6304 0 249 108 0 0 chr1 110435677 110435714 -171757950 + (T)n Simple_repeat Simple_repeat 1 37 0 238 331 8 30 chr1 110436876 110437009 -171756655 - LTR16C LTR ERVL -10 481 352 327 222 119 8 chr1 110437412 110437538 -171756126 + L1ME4a LINE L1 5981 6120 -1 18292 31 0 0 chr1 110437659 110440634 -171753030 - L1PA3 LINE L1 0 6155 3180 1842 148 17 3 chr1 110440680 110440978 -171752686 - AluSx SINE Alu -10 302 1 642 313 34 24 chr1 110441167 110441461 -171752203 - L2 LINE L2 -157 3156 2860 230 163 47 0 chr1 110441472 110441515 -171752149 + L2 LINE L2 3261 3305 -8 234 266 47 0 chr1 110441736 110441800 -171751864 + L2 LINE L2 3154 3220 -52 337 305 34 124 chr1 110442197 110442551 -171751113 + L2 LINE L2 2924 3245 -27 315 71 0 0 chr1 110444429 110444471 -171749193 + (TG)n Simple_repeat Simple_repeat 1 42 0 297 51 0 0 chr1 110445126 110445165 -171748499 + (TC)n Simple_repeat Simple_repeat 2 40 0 583 84 21 0 chr1 110445425 110445520 -171748144 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 259 103 0 0 chr1 110445521 110445560 -171748104 + MER5A DNA MER1_type 37 75 -114 510 312 87 32 chr1 110446892 110447110 -171746554 - MIR SINE MIR -8 254 25 486 237 171 13 chr1 110447370 110447522 -171746142 + MER5A DNA MER1_type 13 188 -1 213 211 0 0 chr1 110447963 110448020 -171745644 + GA-rich Low_complexity Low_complexity 2 58 0 324 228 89 57 chr1 110448873 110448996 -171744668 - MIR SINE MIR -56 206 80 294 304 39 138 chr1 110449071 110449496 -171744168 - L2 LINE L2 -1 3271 2899 1732 157 11 11 chr1 110449496 110449812 -171743852 + AluSx SINE Alu 1 316 0 294 304 39 138 chr1 110449812 110449879 -171743785 - L2 LINE L2 -373 2899 2827 26 50 0 0 chr1 110450118 110450158 -171743506 + AT_rich Low_complexity Low_complexity 1 40 0 499 270 123 66 chr1 110450167 110450742 -171742922 - HAL1 LINE L1 -136 2371 1764 264 264 109 92 chr1 110450728 110451415 -171742249 - HAL1 LINE L1 -997 1510 812 * 27 0 0 0 chr1 110451563 110451590 -171742074 + AT_rich Low_complexity Low_complexity 1 27 0 250 148 0 33 chr1 110451783 110451844 -171741820 + (TA)n Simple_repeat Simple_repeat 1 59 0 583 246 166 20 chr1 110451848 110452408 -171741256 + L1M4 LINE L1 2671 3312 -2834 914 326 79 12 chr1 110452472 110452966 -171740698 + L1ME3A LINE L1 360 886 -5835 1509 271 45 3 chr1 110452999 110453582 -171740082 + L1ME3A LINE L1 1068 1674 -5047 1480 218 120 46 chr1 110453588 110454046 -171739618 - MLT1D LTR MaLR -9 496 5 330 270 71 36 chr1 110454055 110454251 -171739413 + L1ME3A LINE L1 1627 1829 -4711 2595 239 34 30 chr1 110454262 110455119 -171738545 + L1ME3A LINE L1 2637 3496 -3044 288 269 0 0 chr1 110455168 110455272 -171738392 + (TA)n Simple_repeat Simple_repeat 2 105 0 2651 292 72 23 chr1 110455274 110455951 -171737713 + L1ME3A LINE L1 3816 4458 -2082 3763 178 13 25 chr1 110455951 110456665 -171736999 + MER44D DNA MER2_type 1 705 0 2651 292 72 23 chr1 110456665 110457523 -171736141 + L1ME3A LINE L1 4458 5426 -1114 332 241 62 0 chr1 110457566 110457678 -171735986 + Charlie4 DNA MER1_type 1827 1945 -16 458 250 108 25 chr1 110457740 110457980 -171735684 + L1ME3A LINE L1 5482 5741 -799 292 287 59 0 chr1 110458048 110458149 -171735515 + L1ME3A LINE L1 5916 6022 -542 23086 183 27 18 chr1 110458208 110463983 -171729681 + L1PA11 LINE L1 10 6932 -680 2007 135 0 7 chr1 110463983 110464280 -171729384 + AluSx SINE Alu 5 299 -13 23086 183 27 18 chr1 110464280 110464963 -171728701 + L1PA11 LINE L1 6932 7607 -5 24 67 0 0 chr1 110465009 110465054 -171728610 + AT_rich Low_complexity Low_complexity 1 45 0 1138 242 42 31 chr1 110465283 110465639 -171728025 + L1ME3A LINE L1 6205 6564 0 302 328 0 41 chr1 110465637 110465759 -171727905 - HAL1 LINE L1 -1689 818 702 * 22 0 0 0 chr1 110466191 110466213 -171727451 + AT_rich Low_complexity Low_complexity 1 22 0 2196 121 0 0 chr1 110466261 110466568 -171727096 - AluSg SINE Alu -3 307 1 207 178 0 68 chr1 110466600 110466673 -171726991 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 237 163 0 0 chr1 110467047 110467096 -171726568 + A-rich Low_complexity Low_complexity 1 49 0 476 263 56 56 chr1 110467274 110467594 -171726070 - L1ME3A LINE L1 -228 5942 5623 386 148 57 11 chr1 110467728 110467816 -171725848 + L1MB3 LINE L1 6089 6180 -3 217 225 0 0 chr1 110467955 110467995 -171725669 + (TG)n Simple_repeat Simple_repeat 1 40 0 222 37 0 0 chr1 110467995 110468022 -171725642 + (TA)n Simple_repeat Simple_repeat 2 28 0 460 284 18 12 chr1 110469105 110469274 -171724390 + MER3 DNA MER1_type 2 124 -85 1147 191 0 60 chr1 110469275 110469542 -171724122 + AluJo SINE Alu 1 251 -61 381 85 0 0 chr1 110469563 110469610 -171724054 + MER3 DNA MER1_type 163 209 0 373 115 0 0 chr1 110469567 110469619 -171724045 - MER3 DNA MER1_type -119 90 39 * 2601 226 95 36 chr1 110470518 110471731 -171721933 - L1ME LINE L1 -466 5980 4700 23 54 0 0 chr1 110471778 110471815 -171721849 + AT_rich Low_complexity Low_complexity 1 37 0 2021 264 56 26 chr1 110471818 110472384 -171721280 - L1MEc LINE L1 -3650 2776 2193 1549 178 10 14 chr1 110472384 110472676 -171720988 + AluJo SINE Alu 1 291 -21 2021 264 56 26 chr1 110472676 110473135 -171720529 - L1MEc LINE L1 -4233 2193 1749 277 263 13 0 chr1 110473152 110473228 -171720436 - L1MEc LINE L1 -5034 1392 1316 3772 189 19 4 chr1 110473286 110474042 -171719622 - L1 LINE L1 -908 5238 4472 * 4356 147 8 50 chr1 110474037 110474894 -171718770 + L1MA6 LINE L1 5282 6099 -201 1962 152 76 15 chr1 110474895 110475238 -171718426 + THE1B LTR MaLR 1 364 0 11058 117 4 9 chr1 110475238 110475662 -171718002 + THE1B-int LTR MaLR 1 426 -1154 7421 27 32 0 chr1 110475662 110476693 -171716971 - L1PA4 LINE L1 -1 6154 5116 11058 117 4 9 chr1 110476693 110477856 -171715808 + THE1B-int LTR MaLR 426 1580 0 1837 148 118 15 chr1 110477856 110478186 -171715478 + THE1B LTR MaLR 1 364 0 892 182 35 0 chr1 110478186 110478384 -171715280 + L1MA6 LINE L1 6096 6300 0 22 0 0 0 chr1 110478384 110478406 -171715258 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr1 110479681 110479735 -171713929 + AT_rich Low_complexity Low_complexity 1 54 0 307 60 0 0 chr1 110479778 110479833 -171713831 + L1HS LINE L1 6100 6155 0 198 346 158 20 chr1 110479838 110479939 -171713725 - MIR SINE MIR -78 130 16 24 0 0 0 chr1 110480449 110480473 -171713191 + AT_rich Low_complexity Low_complexity 1 24 0 382 276 67 25 chr1 110480618 110480922 -171712742 - L1 LINE L1 -1079 5136 4807 329 143 0 0 chr1 110480924 110480987 -171712677 - L1PA15 LINE L1 0 6165 6103 2514 221 69 0 chr1 110480988 110481599 -171712065 + L1P LINE L1 4621 5273 -873 252 284 110 38 chr1 110481659 110482050 -171711614 - L1 LINE L1 -1448 4767 4349 1908 260 85 32 chr1 110482062 110482280 -171711384 - L1M2 LINE L1 -3427 2788 2583 1833 161 44 19 chr1 110482280 110482646 -171711018 - THE1C LTR MaLR 0 375 1 1908 260 85 32 chr1 110482646 110483694 -171709970 - L1M2 LINE L1 -3632 2583 1506 391 333 47 57 chr1 110483696 110484081 -171709583 + L1MEc LINE L1 808 1188 -5208 24 32 0 0 chr1 110484726 110484757 -171708907 + AT_rich Low_complexity Low_complexity 1 31 0 187 336 144 58 chr1 110484986 110485090 -171708574 + L2 LINE L2 3160 3272 0 2137 108 7 3 chr1 110486705 110487001 -171706663 + AluSp SINE Alu 1 297 -16 261 235 103 0 chr1 110487158 110487226 -171706438 + L2 LINE L2 3238 3312 -1 215 181 83 69 chr1 110487278 110487350 -171706314 - L2 LINE L2 -2 3311 3239 281 326 30 53 chr1 110487600 110487732 -171705932 - L2 LINE L2 -5 3267 3139 346 295 127 72 chr1 110487837 110488183 -171705481 + L2 LINE L2 2931 3295 -18 267 343 56 38 chr1 110488232 110488488 -171705176 - L2 LINE L2 -234 3038 2778 27 0 0 0 chr1 110488489 110488516 -171705148 + AT_rich Low_complexity Low_complexity 1 27 0 427 256 246 38 chr1 110489661 110489838 -171703826 - MIR SINE MIR -6 256 27 2461 53 23 0 chr1 110489838 110490140 -171703524 - AluSp SINE Alu -4 309 1 427 256 246 38 chr1 110490140 110490173 -171703491 - MIR SINE MIR -235 27 2 27 29 0 0 chr1 110490320 110490354 -171703310 + AT_rich Low_complexity Low_complexity 1 34 0 269 263 77 19 chr1 110491806 110491962 -171701702 - L1ME LINE L1 -314 5807 5643 180 192 96 39 chr1 110492474 110492526 -171701138 - L2 LINE L2 -582 2732 2678 479 287 116 14 chr1 110494634 110494979 -171698685 + L1ME4a LINE L1 5536 5915 -206 354 23 0 0 chr1 110495099 110495142 -171698522 + (TG)n Simple_repeat Simple_repeat 2 44 0 27 0 0 0 chr1 110495557 110495584 -171698080 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chr1 110495640 110495697 -171697967 + AT_rich Low_complexity Low_complexity 1 57 0 407 339 20 49 chr1 110496237 110496482 -171697182 + MLT1L LTR MaLR 355 592 -23 202 264 0 19 chr1 110496505 110496558 -171697106 + MIR SINE MIR 164 215 -47 390 288 72 7 chr1 110496691 110496830 -171696834 + MIR SINE MIR 110 257 -5 3371 147 11 2 chr1 110496999 110497551 -171696113 - L1PA11 LINE L1 -1510 4636 4080 6208 102 7 2 chr1 110497553 110497932 -171695732 + L1PA11 LINE L1 4636 5012 -1162 2133 123 24 39 chr1 110497932 110498313 -171695351 + THE1C LTR MaLR 1 375 0 6208 102 7 2 chr1 110498313 110499454 -171694210 + L1PA11 LINE L1 5012 6173 -1 887 306 25 0 chr1 110499476 110499718 -171693946 - MIR SINE MIR -14 248 1 2300 153 50 29 chr1 110499876 110500293 -171693371 + MSTB LTR MaLR 1 426 0 225 309 11 85 chr1 110500805 110500899 -171692765 + LTR67 LTR ERVL 95 181 -376 4749 83 22 1 chr1 110502912 110503559 -171690105 + PABL_A LTR ERV1 1 660 0 316 330 35 9 chr1 110504118 110504233 -171689431 + Charlie7 DNA MER1_type 182 299 -2313 625 238 28 56 chr1 110504425 110504639 -171689025 + L2 LINE L2 3106 3313 0 269 223 91 58 chr1 110505217 110505338 -171688326 + L2 LINE L2 3117 3241 -72 547 262 87 26 chr1 110505407 110505603 -171688061 + MIR SINE MIR 54 260 -2 1405 146 0 0 chr1 110506950 110507155 -171686509 + AluSx SINE Alu 1 205 -107 1040 190 0 0 chr1 110507154 110507333 -171686331 + AluSg/x SINE Alu 116 294 -18 * 2000 183 66 5 chr1 110507757 110508135 -171685529 + MSTA LTR MaLR 1 401 -27 428 262 154 33 chr1 110508279 110508611 -171685053 - L1ME4a LINE L1 -121 6000 5629 2228 75 0 0 chr1 110508613 110508938 -171684726 - AluY SINE Alu 0 327 3 561 290 48 100 chr1 110509482 110510165 -171683499 + L1ME LINE L1 828 1475 -5055 5752 61 0 0 chr1 110510390 110511114 -171682550 - L1PA6 LINE L1 -3 6151 5428 9033 74 18 4 chr1 110511114 110512404 -171681260 + L1PA6 LINE L1 4133 5432 -722 366 310 95 40 chr1 110512418 110512449 -171681215 + L1ME LINE L1 1812 1840 -4700 540 91 13 0 chr1 110512449 110512526 -171681138 - MADE1 DNA Mariner -2 78 1 366 310 95 40 chr1 110512526 110512768 -171680896 + L1ME LINE L1 1840 2100 -4440 461 314 66 3 chr1 110513262 110513549 -171680115 + L1ME LINE L1 2664 2968 -3572 284 265 34 68 chr1 110513822 110513939 -171679725 + L1ME LINE L1 5921 6033 -531 353 293 30 30 chr1 110515075 110515273 -171678391 - L1M4 LINE L1 -1459 4687 4490 4320 137 14 18 chr1 110515551 110516276 -171677388 - L1PA16 LINE L1 0 6166 5445 1155 144 23 0 chr1 110516277 110516547 -171677117 + L1P LINE L1 5154 5428 -738 7693 106 19 28 chr1 110516575 110517827 -171675837 + HSMAR2 DNA Mariner 3 1301 -1 28 0 0 0 chr1 110518326 110518354 -171675310 + AT_rich Low_complexity Low_complexity 1 28 0 310 317 75 39 chr1 110518942 110519122 -171674542 - MIR3 SINE MIR -56 152 1 195 200 29 14 chr1 110519382 110519452 -171674212 + GA-rich Low_complexity Low_complexity 1 71 0 1424 120 68 4 chr1 110519742 110520008 -171673656 + L1MA8 LINE L1 6009 6291 0 26 50 0 0 chr1 110520182 110520222 -171673442 + AT_rich Low_complexity Low_complexity 1 40 0 2760 10 3 0 chr1 110520279 110520589 -171673075 - AluY SINE Alu 0 311 1 408 283 8 25 chr1 110520925 110521045 -171672619 + L2 LINE L2 3191 3308 -5 1606 123 12 0 chr1 110521448 110521692 -171671972 - L1PB3 LINE L1 0 6154 5908 1455 165 92 0 chr1 110521729 110522001 -171671663 + AluJo SINE Alu 1 297 -15 180 77 0 0 chr1 110522121 110522147 -171671517 + (TG)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr1 110522197 110522234 -171671430 + (TA)n Simple_repeat Simple_repeat 2 38 0 366 357 98 30 chr1 110522616 110522983 -171670681 + L3 LINE CR1 197 588 -989 212 143 0 0 chr1 110524721 110524756 -171668908 + (CA)n Simple_repeat Simple_repeat 2 36 0 6940 30 1 4 chr1 110526639 110527474 -171666190 - L1PA4 LINE L1 0 6155 5323 4402 32 0 0 chr1 110527473 110528001 -171665663 + L1P LINE L1 3355 3882 -2264 * 9206 203 68 51 chr1 110528338 110529966 -171663698 - Charlie1 DNA MER1_type 0 2761 1066 2105 136 0 0 chr1 110529966 110530276 -171663388 - AluSx SINE Alu -2 310 1 9206 203 68 51 chr1 110530276 110531361 -171662303 - Charlie1 DNA MER1_type -1695 1066 1 22 35 0 0 chr1 110531801 110531830 -171661834 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr1 110532060 110532102 -171661562 + AT_rich Low_complexity Low_complexity 1 42 0 247 267 33 0 chr1 110532119 110532179 -171661485 - HAL1 LINE L1 -642 1865 1804 287 303 37 9 chr1 110532189 110532298 -171661366 - HAL1 LINE L1 -792 1715 1604 263 330 52 81 chr1 110532353 110532662 -171661002 - HAL1 LINE L1 -1945 562 263 439 286 9 0 chr1 110532956 110533068 -171660596 + MER81 DNA DNA 2 114 0 274 208 19 0 chr1 110533153 110533206 -171660458 - L2 LINE L2 -6 3307 3254 339 81 48 32 chr1 110533614 110533676 -171659988 - L1MC5 LINE L1 -269 7692 7630 533 325 109 50 chr1 110533907 110534209 -171659455 + MER115 DNA AcHobo 115 434 -259 270 163 0 0 chr1 110534231 110534274 -171659390 + Zaphod DNA AcHobo 3987 4029 -2 227 27 0 54 chr1 110534326 110534363 -171659301 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1985 131 52 30 chr1 110534434 110534801 -171658863 - THE1C LTR MaLR 0 375 1 1685 131 104 0 chr1 110535084 110535343 -171658321 - AluSc SINE Alu -22 287 2 5547 92 17 11 chr1 110536065 110536897 -171656767 + L1MA2 LINE L1 5468 6304 0 271 260 14 0 chr1 110537034 110537107 -171656557 + MIR SINE MIR 66 139 -123 22 0 0 0 chr1 110537484 110537506 -171656158 + AT_rich Low_complexity Low_complexity 1 22 0 256 317 108 54 chr1 110537960 110538127 -171655537 - MIR3 SINE MIR -4 204 29 197 65 32 0 chr1 110540145 110540176 -171653488 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1755 168 37 0 chr1 110541363 110541661 -171652003 - AluSx SINE Alu -3 309 1 312 247 0 0 chr1 110542766 110542851 -171650813 + (TA)n Simple_repeat Simple_repeat 2 86 0 2812 10 0 0 chr1 110542931 110543240 -171650424 - AluYb8 SINE Alu -9 309 1 280 364 134 11 chr1 110543248 110543517 -171650147 + L2 LINE L2 2550 2851 -463 271 311 42 79 chr1 110543550 110543740 -171649924 + MIR3 SINE MIR 16 198 -10 389 244 61 15 chr1 110544309 110544440 -171649224 + MER117 DNA MER1_type 45 181 -16 200 316 39 84 chr1 110544568 110544723 -171648941 + MIR SINE MIR 61 208 -54 2755 250 17 31 chr1 110544746 110544881 -171648783 + L1MC1 LINE L1 3850 3985 -2161 3081 59 76 0 chr1 110544881 110545251 -171648413 + MLT2A1 LTR ERVL 5 410 -34 249 33 0 0 chr1 110545251 110545281 -171648383 + (TA)n Simple_repeat Simple_repeat 2 31 0 3081 59 76 0 chr1 110545281 110545319 -171648345 + MLT2A1 LTR ERVL 410 444 0 2755 250 17 31 chr1 110545319 110546317 -171647347 + L1MC1 LINE L1 3985 4925 -1221 230 106 21 0 chr1 110546325 110546372 -171647292 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 1053 231 11 0 chr1 110546405 110546665 -171646999 + L1MC1 LINE L1 4964 5226 -920 1470 160 39 0 chr1 110546665 110546921 -171646743 - Tigger3(Golem) DNA MER2_type -1 3028 2763 876 182 79 79 chr1 110546943 110547157 -171646507 - Tigger3(Golem) DNA MER2_type -2815 214 1 5176 142 27 17 chr1 110547186 110548118 -171645546 + L1MC1 LINE L1 5254 6194 -139 906 207 53 0 chr1 110548121 110548309 -171645355 + L1MC1 LINE L1 6127 6324 -9 800 307 110 39 chr1 110548733 110549513 -171644151 - L2 LINE L2 -2 3311 2455 1753 238 204 4 chr1 110549523 110550024 -171643640 + MLT2F LTR ERVL 1 601 -62 257 259 12 12 chr1 110550515 110550600 -171643064 + GA-rich Low_complexity Low_complexity 2 86 0 24 91 0 0 chr1 110551040 110551106 -171642558 + AT_rich Low_complexity Low_complexity 1 66 0 1528 190 0 4 chr1 110551767 110552025 -171641639 + AluJo SINE Alu 1 257 -55 313 260 57 16 chr1 110552465 110552588 -171641076 + MIR SINE MIR 15 142 -120 231 306 59 0 chr1 110553915 110554000 -171639664 - MER91C DNA MER1_type -32 108 19 383 341 83 62 chr1 110554372 110554697 -171638967 + L2 LINE L2 2889 3220 -93 21 0 0 0 chr1 110555141 110555162 -171638502 + AT_rich Low_complexity Low_complexity 1 21 0 995 262 63 5 chr1 110558483 110558844 -171634820 + MLT1C LTR MaLR 6 465 -2 257 307 114 14 chr1 110559340 110559480 -171634184 + L2 LINE L2 3076 3229 -43 533 282 96 14 chr1 110559703 110559923 -171633741 - MIR SINE MIR -24 238 1 21 71 0 0 chr1 110560324 110560366 -171633298 + AT_rich Low_complexity Low_complexity 1 42 0 776 200 0 38 chr1 110561633 110561793 -171631871 - FRAM SINE Alu -24 152 1 932 128 235 5 chr1 110561960 110562164 -171631500 - L1PA16 LINE L1 -6 6160 5910 974 151 22 11 chr1 110562979 110563158 -171630506 - THE1C LTR MaLR 0 375 195 190 222 67 0 chr1 110563746 110563791 -171629873 - MIR SINE MIR -95 113 66 1181 104 92 0 chr1 110564467 110564640 -171629024 + THE1B LTR MaLR 1 189 -175 4748 22 0 0 chr1 110564640 110565187 -171628477 - L1PA4 LINE L1 -271 5884 5338 2128 39 0 0 chr1 110565187 110565445 -171628219 + L1PA4 LINE L1 5894 6151 -4 1026 164 15 51 chr1 110565445 110565640 -171628024 + THE1B LTR MaLR 174 361 -3 396 88 0 0 chr1 110565640 110565697 -171627967 + (CA)n Simple_repeat Simple_repeat 2 58 0 298 255 29 20 chr1 110565773 110565875 -171627789 - LTR67 LTR ERVL -21 536 434 3365 250 126 20 chr1 110565883 110567341 -171626323 - MER52A LTR ERV1 0 1755 1 213 167 0 24 chr1 110569599 110569641 -171624023 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 2154 117 0 23 chr1 110569699 110570007 -171623657 + AluSc SINE Alu 1 301 -8 1099 221 14 0 chr1 110570191 110570404 -171623260 + MER58A DNA MER1_type 9 224 0 298 235 196 10 chr1 110570434 110570536 -171623128 - MIR SINE MIR -10 252 132 500 123 12 0 chr1 110570594 110570675 -171622989 + MER53 DNA DNA 13 94 -95 447 157 22 0 chr1 110570725 110570814 -171622850 - MER53 DNA DNA -85 104 14 304 399 33 56 chr1 110571953 110572256 -171621408 - L2 LINE L2 -8 3264 2969 1073 239 9 0 chr1 110572355 110572577 -171621087 + MER58A DNA MER1_type 1 224 0 1270 199 11 23 chr1 110573177 110573443 -171620221 + AluJo SINE Alu 1 263 -49 5637 128 16 66 chr1 110573467 110574549 -171619115 - Tigger3b DNA MER2_type 0 1231 204 1264 193 0 14 chr1 110574615 110574838 -171618826 - Tigger3b DNA MER2_type -1010 221 2 345 239 30 75 chr1 110576285 110576419 -171617245 - L2 LINE L2 0 3313 3186 1135 210 14 82 chr1 110577011 110577377 -171616287 + MER2 DNA MER2_type 4 344 0 235 160 20 0 chr1 110579103 110579153 -171614511 + T-rich Low_complexity Low_complexity 5 55 0 309 316 79 53 chr1 110579920 110580110 -171613554 - MIR3 SINE MIR -5 203 9 674 247 105 38 chr1 110580130 110580369 -171613295 + MIR SINE MIR 6 260 -2 316 173 111 12 chr1 110580712 110580793 -171612871 - MLT2B1 LTR ERVL 0 515 427 * 1358 174 21 8 chr1 110580781 110581023 -171612641 - MLT2B1 LTR ERVL -274 246 2 27 49 0 0 chr1 110581607 110581648 -171612016 + AT_rich Low_complexity Low_complexity 1 41 0 233 262 123 66 chr1 110582075 110582197 -171611467 - MIR SINE MIR -64 144 16 357 301 22 52 chr1 110582282 110582418 -171611246 + MIR3 SINE MIR 47 178 -30 313 238 12 24 chr1 110582577 110582661 -171611003 - MLT1K LTR MaLR -42 546 464 554 279 95 56 chr1 110582819 110583124 -171610540 - MLT1K LTR MaLR -240 348 32 282 250 182 0 chr1 110583497 110583629 -171610035 - MER103 DNA DNA 0 166 11 287 282 89 24 chr1 110584110 110584234 -171609430 + MIR SINE MIR 83 214 -48 2225 104 0 3 chr1 110584941 110585240 -171608424 + AluSq SINE Alu 1 298 -15 422 304 134 27 chr1 110586475 110586699 -171606965 + MIR SINE MIR 3 250 -12 204 182 0 0 chr1 110586752 110586796 -171606868 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 834 300 28 4 chr1 110589706 110589956 -171603708 + MIR SINE MIR 6 261 -1 2177 281 81 44 chr1 110590648 110590847 -171602817 + L2 LINE L2 2093 2283 -1030 2389 99 0 0 chr1 110590847 110591150 -171602514 - AluSc SINE Alu -6 303 1 2177 281 81 44 chr1 110591150 110592124 -171601540 + L2 LINE L2 2283 3308 -5 26 64 0 0 chr1 110594197 110594244 -171599420 + AT_rich Low_complexity Low_complexity 1 47 0 1213 183 24 0 chr1 110594378 110594591 -171599073 + AluJo SINE Alu 3 220 -92 239 191 29 59 chr1 110595367 110595435 -171598229 + MLT1J2 LTR MaLR 72 137 -313 1537 143 0 4 chr1 110597024 110597294 -171596370 + AluSx SINE Alu 54 322 0 405 344 74 33 chr1 110597444 110597697 -171595967 + L2 LINE L2 2733 2986 -286 230 209 0 0 chr1 110597936 110597979 -171595685 + L2 LINE L2 3230 3272 0 842 201 0 0 chr1 110599270 110599444 -171594220 - L1MA3 LINE L1 -10 6295 6122 625 107 25 41 chr1 110599447 110599568 -171594096 + L1MA3 LINE L1 5983 6101 -204 613 279 171 58 chr1 110599606 110600021 -171593643 + MLT1J LTR MaLR 7 468 -43 311 93 0 19 chr1 110600123 110600310 -171593354 - Alu SINE Alu 0 435 250 266 359 63 63 chr1 110600699 110601289 -171592375 - L2 LINE L2 -1111 2203 1614 192 125 0 0 chr1 110601758 110601790 -171591874 + (CA)n Simple_repeat Simple_repeat 2 33 0 224 281 24 24 chr1 110601883 110601965 -171591699 - MIR3 SINE MIR -9 199 118 210 349 0 0 chr1 110602189 110602261 -171591403 - MIR SINE MIR -65 143 78 370 242 84 118 chr1 110602545 110602723 -171590941 + MER5B DNA MER1_type 7 178 0 21 0 0 0 chr1 110602934 110602955 -171590709 + AT_rich Low_complexity Low_complexity 1 21 0 750 250 149 4 chr1 110604105 110604333 -171589331 + MIR SINE MIR 2 262 0 246 299 246 8 chr1 110604605 110604739 -171588925 + MIR SINE MIR 49 214 -48 23 0 0 0 chr1 110604866 110604889 -171588775 + AT_rich Low_complexity Low_complexity 1 23 0 596 308 126 28 chr1 110605083 110605512 -171588152 - L2 LINE L2 -2 3311 2841 302 261 10 128 chr1 110605679 110605890 -171587774 - MIR SINE MIR -59 203 19 207 100 0 0 chr1 110607361 110607391 -171586273 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1959 143 0 3 chr1 110607400 110607687 -171585977 - AluSx SINE Alu -26 286 1 200 204 167 0 chr1 110607848 110607902 -171585762 - MIR SINE MIR -84 178 116 204 226 0 123 chr1 110608128 110608234 -171585430 - L2 LINE L2 0 3272 3180 747 191 0 0 chr1 110608752 110608888 -171584776 - FLAM_C SINE Alu -3 140 5 2378 70 3 0 chr1 110609795 110610096 -171583568 - AluY SINE Alu -9 302 1 239 270 16 32 chr1 110610157 110610220 -171583444 + L2 LINE L2 3210 3271 -1 231 222 9 114 chr1 110610579 110610694 -171582970 - MER5A DNA MER1_type -70 119 4 2034 130 0 0 chr1 110613915 110614200 -171579464 + AluSx SINE Alu 1 285 -27 24 0 0 0 chr1 110614200 110614224 -171579440 + AT_rich Low_complexity Low_complexity 1 24 0 367 333 57 0 chr1 110615323 110615446 -171578218 - L2 LINE L2 0 3313 3184 1616 179 3 52 chr1 110615753 110616078 -171577586 - AluJo SINE Alu -3 309 1 346 266 154 24 chr1 110616240 110616409 -171577255 + MIR3 SINE MIR 6 196 -12 1028 187 4 67 chr1 110617385 110617610 -171576054 - AluJo SINE Alu -101 211 1 346 266 154 24 chr1 110617772 110617941 -171575723 + MIR3 SINE MIR 6 196 -12 419 190 13 13 chr1 110619547 110619625 -171574039 + Tigger5 DNA MER2_type 1 78 -2245 304 281 0 0 chr1 110619625 110619707 -171573957 - Tigger5 DNA MER2_type -3 2320 2239 261 204 0 0 chr1 110619690 110619739 -171573925 + Tigger5 DNA MER2_type 2240 2288 -35 * 470 168 147 21 chr1 110620040 110620135 -171573529 - MER21A LTR ERV1 -353 578 393 578 303 91 25 chr1 110620198 110620472 -171573192 - L2 LINE L2 -5 3308 3017 2093 215 25 29 chr1 110620568 110621052 -171572612 + MLT1D LTR MaLR 22 503 -2 402 85 0 0 chr1 110621444 110621503 -171572161 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 496 322 116 12 chr1 110621508 110622015 -171571649 - L2 LINE L2 -13 3300 2677 3724 151 56 43 chr1 110622047 110622882 -171570782 - L1MA6 LINE L1 0 6300 5455 566 257 93 49 chr1 110623060 110623243 -171570421 + MER58A DNA MER1_type 2 192 -32 267 90 15 45 chr1 110623251 110623318 -171570346 + (CAAAAA)n Simple_repeat Simple_repeat 2 66 0 361 342 17 8 chr1 110623959 110624076 -171569588 + MIR3 SINE MIR 81 198 -10 22 70 0 0 chr1 110625919 110625962 -171567702 + AT_rich Low_complexity Low_complexity 1 43 0 1826 132 0 4 chr1 110627997 110628270 -171565394 - AluSg SINE Alu 0 310 39 21 0 0 0 chr1 110629230 110629251 -171564413 + AT_rich Low_complexity Low_complexity 1 21 0 305 234 127 51 chr1 110629653 110629811 -171563853 + L1MEd LINE L1 42 211 -5908 402 265 20 10 chr1 110629859 110629957 -171563707 + MER5A DNA MER1_type 14 112 -77 345 390 17 66 chr1 110630057 110630419 -171563245 + L1MEd LINE L1 274 617 -5502 314 280 65 38 chr1 110630434 110630461 -171563203 - L1MEc LINE L1 -4146 2250 2225 261 0 0 0 chr1 110630461 110630490 -171563174 + (TG)n Simple_repeat Simple_repeat 2 30 0 314 280 65 38 chr1 110630490 110630648 -171563016 - L1MEc LINE L1 -4171 2225 2060 612 336 85 0 chr1 110630725 110630936 -171562728 - MIR SINE MIR -26 236 8 402 21 0 0 chr1 110630976 110631023 -171562641 + (TG)n Simple_repeat Simple_repeat 2 48 0 220 226 65 0 chr1 110631466 110631528 -171562136 - MIR SINE MIR -14 248 183 1666 198 6 10 chr1 110631531 110631844 -171561820 - AluJo SINE Alu 0 312 1 22 35 0 0 chr1 110632088 110632117 -171561547 + AT_rich Low_complexity Low_complexity 1 29 0 5428 126 45 6 chr1 110632211 110633123 -171560541 - L1PA13 LINE L1 -12 6151 5221 6379 181 19 5 chr1 110633228 110634459 -171559205 - L1PA13 LINE L1 -916 5230 3983 353 278 112 68 chr1 110634501 110634706 -171558958 + L1ME LINE L1 5521 5734 -387 313 336 48 77 chr1 110634855 110635063 -171558601 + MIR SINE MIR 61 262 0 429 242 0 11 chr1 110636223 110636318 -171557346 - MLT1K LTR MaLR -4 584 491 527 217 116 8 chr1 110637317 110637446 -171556218 - MLT1F1 LTR MaLR -420 147 5 610 312 61 30 chr1 110637461 110637868 -171555796 + L1ME LINE L1 5317 5736 -426 210 128 0 0 chr1 110638261 110638300 -171555364 + (CA)n Simple_repeat Simple_repeat 2 40 0 2176 283 48 40 chr1 110638681 110638723 -171554941 + L1MCb LINE L1 3 43 -6002 186 43 0 0 chr1 110638723 110638746 -171554918 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2176 283 48 40 chr1 110638746 110639607 -171554057 + L1MCb LINE L1 43 913 -5132 376 109 0 0 chr1 110639604 110639659 -171554005 + L1 LINE L1 3384 3438 -2708 * 260 276 187 44 chr1 110640143 110640346 -171553318 - MIR SINE MIR -19 243 12 836 195 95 43 chr1 110640963 110641194 -171552470 + MIR SINE MIR 14 256 -6 241 241 0 0 chr1 110642537 110642591 -171551073 - tRNA-Ile-ATT tRNA tRNA -18 59 6 207 0 0 0 chr1 110642766 110642789 -171550875 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 33 30 0 45 chr1 110643267 110643333 -171550331 + AT_rich Low_complexity Low_complexity 1 63 0 1795 225 101 8 chr1 110643540 110644037 -171549627 + MER90 LTR ERV1 72 614 0 547 350 66 45 chr1 110644063 110644532 -171549132 - L3 LINE CR1 -1 1576 1098 235 316 216 5 chr1 110644690 110644880 -171548784 + MIR SINE MIR 23 252 -10 748 357 80 10 chr1 110644934 110645449 -171548215 - L3 LINE CR1 -700 877 327 339 44 0 0 chr1 110645908 110645953 -171547711 + (CA)n Simple_repeat Simple_repeat 2 46 0 183 100 0 0 chr1 110645957 110645987 -171547677 + (GA)n Simple_repeat Simple_repeat 1 30 0 550 284 96 44 chr1 110646188 110646575 -171547089 - MLT1I LTR MaLR -2 407 1 249 196 0 0 chr1 110646798 110646844 -171546820 - MLT1-int LTR MaLR -518 853 808 453 50 0 0 chr1 110646875 110646935 -171546729 + (TA)n Simple_repeat Simple_repeat 2 61 0 24 32 0 0 chr1 110646947 110646978 -171546686 + AT_rich Low_complexity Low_complexity 1 31 0 497 301 43 23 chr1 110647698 110648005 -171545659 - MLT1I LTR MaLR -55 354 2 300 356 107 39 chr1 110648022 110648227 -171545437 - MIR SINE MIR -34 228 10 431 285 86 21 chr1 110648386 110648572 -171545092 - MLT1J2 LTR MaLR -1 449 252 520 259 109 11 chr1 110648601 110648775 -171544889 - MLT1J LTR MaLR -314 197 7 357 123 0 0 chr1 110648782 110648847 -171544817 + (CA)n Simple_repeat Simple_repeat 2 66 0 424 263 19 19 chr1 110649004 110649164 -171544500 + MER103 DNA DNA 5 164 -2 1533 195 20 20 chr1 110650468 110650811 -171542853 - L1ME2 LINE L1 0 6164 5822 948 254 145 14 chr1 110650818 110651176 -171542488 - L1ME2 LINE L1 -403 5761 5357 198 244 0 0 chr1 110651245 110651286 -171542378 + L2 LINE L2 3268 3308 -5 21 0 0 0 chr1 110651340 110651361 -171542303 + AT_rich Low_complexity Low_complexity 1 21 0 203 321 130 8 chr1 110651578 110651709 -171541955 + MIR SINE MIR 48 194 -68 186 43 0 0 chr1 110652851 110652874 -171540790 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 247 362 92 0 chr1 110654737 110654889 -171538775 - MIR SINE MIR -50 212 47 360 324 56 34 chr1 110655632 110655811 -171537853 - MIR SINE MIR -72 190 8 274 209 21 50 chr1 110655937 110656036 -171537628 - MER5A DNA MER1_type 0 189 85 209 250 0 0 chr1 110656506 110656554 -171537110 + L2 LINE L2 3266 3313 0 372 310 185 15 chr1 110657223 110657633 -171536031 + L2 LINE L2 1910 2389 -925 196 226 0 57 chr1 110658247 110658300 -171535364 - L2 LINE L2 -16 3297 3248 469 254 147 34 chr1 110658759 110658936 -171534728 + L1MDa LINE L1 14 210 -6330 1679 208 18 9 chr1 110658948 110659284 -171534380 - MLT1A1 LTR MaLR -3 362 24 566 271 19 29 chr1 110659330 110659537 -171534127 + L1MDa LINE L1 214 418 -6122 513 230 33 20 chr1 110659682 110659824 -171533840 + L1MDa LINE L1 2573 2719 -4002 1995 151 3 3 chr1 110659824 110660129 -171533535 + AluSx SINE Alu 1 305 -7 687 161 0 34 chr1 110660139 110660257 -171533407 + FRAM SINE Alu 49 162 -14 1811 249 28 55 chr1 110660257 110660564 -171533100 + L1MDa LINE L1 2669 2983 -3557 1860 108 108 0 chr1 110660564 110660841 -171532823 + AluSq SINE Alu 1 307 -6 1811 249 28 55 chr1 110660841 110661205 -171532459 + L1MDa LINE L1 2983 3322 -3218 5555 153 17 9 chr1 110661210 110661671 -171531993 + L1MC1 LINE L1 5374 5830 -503 414 0 0 0 chr1 110661671 110661717 -171531947 + (CA)n Simple_repeat Simple_repeat 1 46 0 5555 153 17 9 chr1 110661717 110662208 -171531456 + L1MC1 LINE L1 5830 6333 0 266 306 86 40 chr1 110662415 110662788 -171530876 + L1MDa LINE L1 3647 4036 -2504 240 86 0 0 chr1 110662832 110662867 -171530797 + (CA)n Simple_repeat Simple_repeat 2 36 0 652 158 17 0 chr1 110662872 110662992 -171530672 + L1MC1 LINE L1 5959 6080 -253 1529 196 52 25 chr1 110663010 110663494 -171530170 + L1 LINE L1 2930 3426 -2720 306 0 0 0 chr1 110663624 110663658 -171530006 + (TG)n Simple_repeat Simple_repeat 1 34 0 366 306 87 36 chr1 110663880 110664155 -171529509 - L1ME LINE L1 -507 5614 5326 1695 63 71 8 chr1 110664426 110664665 -171528999 - L1PA5 LINE L1 -5 6149 5896 1763 49 0 4 chr1 110664665 110664891 -171528773 + L1P LINE L1 4599 4823 -1323 459 325 0 0 chr1 110665341 110665467 -171528197 + MIR SINE MIR 11 136 -126 4845 164 63 38 chr1 110665737 110667405 -171526259 - L1PB4 LINE L1 -2 6154 4419 1720 185 3 6 chr1 110667404 110667745 -171525919 + L1PB4 LINE L1 4109 4448 -1698 * 1122 83 0 22 chr1 110667885 110668065 -171525599 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 1455 178 3 65 chr1 110668070 110668362 -171525302 - AluJo SINE Alu -37 275 2 320 282 35 0 chr1 110668500 110668585 -171525079 + MER5A DNA MER1_type 1 88 -101 21 36 0 0 chr1 110668902 110668930 -171524734 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 110669300 110669322 -171524342 + AT_rich Low_complexity Low_complexity 1 22 0 717 302 48 8 chr1 110669485 110669737 -171523927 + MIR SINE MIR 1 262 0 1524 181 0 0 chr1 110670489 110670749 -171522915 - AluSx SINE Alu -13 299 40 21 71 0 0 chr1 110673526 110673568 -171520096 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr1 110673636 110673675 -171519989 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr1 110674914 110674935 -171518729 + AT_rich Low_complexity Low_complexity 1 21 0 289 238 220 19 chr1 110678649 110678818 -171514846 - MIR SINE MIR -32 230 30 319 219 0 24 chr1 110680086 110680168 -171513496 - MIR SINE MIR -97 165 86 180 0 0 0 chr1 110680490 110680510 -171513154 + (T)n Simple_repeat Simple_repeat 1 20 0 1258 275 103 27 chr1 110681214 110681690 -171511974 + LTR33 LTR ERVL 10 521 0 326 233 224 26 chr1 110682024 110682140 -171511524 + L2 LINE L2 3134 3272 0 223 298 0 18 chr1 110682419 110682476 -171511188 - L3 LINE CR1 -7 1570 1515 * 358 360 69 25 chr1 110682472 110682675 -171510989 - L2 LINE L2 -2 3311 3100 248 286 55 44 chr1 110682757 110682848 -171510816 - L3 LINE CR1 -121 1456 1365 2119 114 3 0 chr1 110685008 110685305 -171508359 - AluSc SINE Alu -9 300 3 463 293 33 37 chr1 110685571 110685786 -171507878 + MIR SINE MIR 4 217 -45 228 284 28 64 chr1 110686077 110686186 -171507478 - MIR SINE MIR -4 258 154 279 79 0 0 chr1 110686305 110686343 -171507321 + (CA)n Simple_repeat Simple_repeat 1 38 0 351 127 13 25 chr1 110686343 110686422 -171507242 + GA-rich Low_complexity Low_complexity 2 79 0 223 316 26 0 chr1 110687367 110687443 -171506221 + GA-rich Low_complexity Low_complexity 3 80 0 24 0 0 0 chr1 110690526 110690550 -171503114 + AT_rich Low_complexity Low_complexity 1 24 0 682 199 7 20 chr1 110690884 110691030 -171502634 - FRAM SINE Alu -30 146 3 190 178 178 0 chr1 110691386 110691431 -171502233 - L2 LINE L2 -2 3311 3259 1834 179 27 6 chr1 110691893 110692229 -171501435 + MER7A DNA MER2_type 1 341 -5 321 211 21 0 chr1 110692240 110692335 -171501329 + (TA)n Simple_repeat Simple_repeat 2 98 0 1780 143 118 62 chr1 110692981 110693386 -171500278 + MSTA LTR MaLR 1 428 0 32 43 0 0 chr1 110694326 110694372 -171499292 + AT_rich Low_complexity Low_complexity 1 46 0 509 235 175 15 chr1 110694464 110694664 -171499000 + L1ME3A LINE L1 5939 6170 0 236 279 35 0 chr1 110694922 110695008 -171498656 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 213 310 80 126 chr1 110695174 110695192 -171498472 - L2 LINE L2 0 3272 3255 2123 101 0 52 chr1 110695192 110695498 -171498166 - AluSx SINE Alu -22 290 1 213 310 80 126 chr1 110695498 110695843 -171497821 - L2 LINE L2 -17 3255 2926 569 303 71 62 chr1 110696382 110696706 -171496958 - Charlie8 DNA MER1_type -2145 272 1 514 293 0 37 chr1 110697102 110697290 -171496374 + MIR SINE MIR 48 228 -34 26 30 0 0 chr1 110698778 110698811 -171494853 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 110699169 110699190 -171494474 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 110700339 110700368 -171493296 + AT_rich Low_complexity Low_complexity 1 29 0 357 24 0 0 chr1 110701414 110701456 -171492208 + (CAT)n Simple_repeat Simple_repeat 3 44 0 2025 144 0 13 chr1 110702459 110702772 -171490892 - AluSx SINE Alu -3 309 1 579 228 16 1 chr1 110703913 110704066 -171489598 - L1ME1 LINE L1 0 6184 6021 24 0 0 0 chr1 110704099 110704123 -171489541 + AT_rich Low_complexity Low_complexity 1 24 0 1963 95 4 0 chr1 110704158 110704420 -171489244 - AluSx SINE Alu -1 311 49 528 294 85 14 chr1 110704577 110704788 -171488876 - MIR SINE MIR 0 262 37 21 36 0 0 chr1 110706194 110706222 -171487442 + AT_rich Low_complexity Low_complexity 1 28 0 1295 252 53 17 chr1 110706891 110707252 -171486412 - MER87 LTR ERV1 0 541 168 462 214 19 0 chr1 110707864 110707967 -171485697 - MER94 DNA DNA -11 123 19 27 0 0 0 chr1 110708989 110709016 -171484648 + AT_rich Low_complexity Low_complexity 1 27 0 1821 176 0 0 chr1 110709016 110709300 -171484364 - AluSx SINE Alu -25 287 4 24 32 0 0 chr1 110709939 110709970 -171483694 + AT_rich Low_complexity Low_complexity 1 31 0 192 77 0 0 chr1 110710837 110710863 -171482801 + (T)n Simple_repeat Simple_repeat 1 26 0 200 400 17 0 chr1 110711876 110711991 -171481673 + L2 LINE L2 2871 2987 -285 585 291 36 109 chr1 110712116 110712132 -171481532 - L2 LINE L2 0 3313 3297 2028 156 0 0 chr1 110712132 110712439 -171481225 - AluSx SINE Alu -5 307 1 585 291 36 109 chr1 110712439 110712872 -171480792 - L2 LINE L2 -16 3297 2897 3563 136 6 43 chr1 110712903 110713529 -171480135 - LTR26 LTR ERV1 0 603 1 715 213 14 66 chr1 110713536 110713747 -171479917 - MER3 DNA MER1_type 0 209 10 248 250 78 0 chr1 110714282 110714346 -171479318 - L2 LINE L2 0 3313 3245 204 388 94 0 chr1 110714780 110714865 -171478799 + L2 LINE L2 3005 3097 -216 1814 167 26 10 chr1 110715078 110715383 -171478281 + AluJo SINE Alu 1 310 -2 281 386 0 0 chr1 110716064 110716165 -171477499 + MLT1-int LTR MaLR 762 862 -509 996 182 12 165 chr1 110716628 110716877 -171476787 + LTR8 LTR ERV1 1 218 -509 1975 149 30 33 chr1 110716877 110717240 -171476424 + THE1B LTR MaLR 3 364 0 996 182 12 165 chr1 110717240 110717282 -171476382 + LTR8 LTR ERV1 218 265 -462 1370 199 86 63 chr1 110717384 110717812 -171475852 + LTR8A LTR ERV1 288 725 -2 596 255 89 85 chr1 110717897 110718414 -171475250 + MLT1G1 LTR MaLR 18 523 -19 2584 217 67 39 chr1 110718669 110719627 -171474037 - L1MDa LINE L1 -4551 1989 1005 4148 77 277 0 chr1 110720352 110720999 -171472665 - LTR12 LTR ERV1 0 826 1 4311 128 30 17 chr1 110721037 110721739 -171471925 + MER50 LTR ERV1 1 711 -23 273 119 0 0 chr1 110723040 110723082 -171470582 + (TA)n Simple_repeat Simple_repeat 2 43 0 1198 190 70 140 chr1 110723578 110724163 -171469501 + LTR48 LTR ERV1 4 739 -48 590 258 8 0 chr1 110724255 110724387 -171469277 + FLAM_A SINE Alu 1 133 0 25 0 0 0 chr1 110724394 110724419 -171469245 + AT_rich Low_complexity Low_complexity 1 25 0 3408 240 13 1 chr1 110724485 110725185 -171468479 + L1MA4 LINE L1 3 710 -4618 14204 208 38 19 chr1 110725214 110725920 -171467744 + L1MA4 LINE L1 771 1462 -5020 1702 159 55 7 chr1 110725920 110726210 -171467454 + AluSq SINE Alu 9 312 -1 14204 208 38 19 chr1 110726210 110730476 -171463188 + L1MA4 LINE L1 1462 5847 -635 508 194 22 8 chr1 110730476 110730597 -171463067 + L1MA4 LINE L1 6347 6482 0 467 325 31 21 chr1 110730650 110730844 -171462820 - L2 LINE L2 -1 3312 3117 1007 279 62 36 chr1 110730862 110731246 -171462418 - L2 LINE L2 -767 2547 2154 6758 62 6 35 chr1 110731271 110732251 -171461413 - SVA Other Other -2 1384 433 884 209 150 47 chr1 110732715 110733074 -171460590 - MSTD LTR MaLR 0 396 1 28 0 0 0 chr1 110733526 110733554 -171460110 + AT_rich Low_complexity Low_complexity 1 28 0 387 41 0 0 chr1 110733645 110733694 -171459970 + (TG)n Simple_repeat Simple_repeat 2 50 0 978 201 14 61 chr1 110734390 110734669 -171458995 - L1MD3 LINE L1 -937 7058 6793 579 245 163 5 chr1 110734669 110734853 -171458811 - L1ME LINE L1 -375 5791 5579 315 20 0 59 chr1 110734888 110734939 -171458725 - L1PA6 LINE L1 0 6154 6107 293 90 0 0 chr1 110734939 110734977 -171458687 + L1PA8A LINE L1 5674 5714 -417 1152 219 55 68 chr1 110734988 110735447 -171458217 - L1ME LINE L1 -1031 5115 4661 458 129 94 0 chr1 110735447 110735532 -171458132 + L1MA8 LINE L1 6197 6289 -2 1152 219 55 68 chr1 110735532 110735543 -171458121 - L1ME LINE L1 -1485 4661 4651 297 354 88 0 chr1 110735872 110736019 -171457645 + MIR SINE MIR 27 186 -76 28 0 0 0 chr1 110736554 110736582 -171457082 + AT_rich Low_complexity Low_complexity 1 28 0 236 345 62 0 chr1 110737023 110737136 -171456528 + LTR16C LTR ERVL 1 120 -371 430 276 134 41 chr1 110737243 110737690 -171455974 - L1ME3A LINE L1 -200 5970 5487 298 346 58 0 chr1 110737687 110737843 -171455821 - L1ME3A LINE L1 -1239 4907 4743 * 304 291 80 4 chr1 110737892 110738129 -171455535 - L1ME3A LINE L1 -1560 4586 4332 754 297 30 27 chr1 110738153 110738523 -171455141 - L1ME3A LINE L1 -1924 4222 3852 24 0 0 0 chr1 110738534 110738558 -171455106 + AT_rich Low_complexity Low_complexity 1 24 0 475 254 71 25 chr1 110738612 110738809 -171454855 + MLT1K LTR MaLR 357 562 -26 21 0 0 0 chr1 110739004 110739025 -171454639 + AT_rich Low_complexity Low_complexity 1 21 0 793 284 52 23 chr1 110739204 110739549 -171454115 - L1MC4a LINE L1 -1885 5923 5569 516 304 37 19 chr1 110739666 110739880 -171453784 - L1ME1 LINE L1 -3 6232 6015 1657 151 93 22 chr1 110739898 110740210 -171453454 + MER47A DNA MER2_type 33 366 0 1611 273 56 14 chr1 110740222 110740816 -171452848 - L1ME1 LINE L1 -226 6007 5389 1017 251 33 33 chr1 110740929 110741355 -171452309 - L1ME1 LINE L1 -3611 2604 2179 446 221 210 11 chr1 110741408 110741589 -171452075 - L1ME1 LINE L1 -4333 2063 1847 628 272 31 7 chr1 110741595 110741827 -171451837 + L1M4 LINE L1 4013 4249 -1897 35 24 0 0 chr1 110741909 110741951 -171451713 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr1 110742662 110742698 -171450966 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 110743024 110743045 -171450619 + AT_rich Low_complexity Low_complexity 1 21 0 620 248 124 22 chr1 110743140 110743366 -171450298 + MIR SINE MIR 2 250 -12 416 276 90 7 chr1 110743469 110743614 -171450050 - L2 LINE L2 -3 3310 3154 342 45 0 0 chr1 110743647 110743691 -171449973 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1134 205 32 35 chr1 110743694 110743977 -171449687 - AluJo SINE Alu -30 282 1 1347 215 61 16 chr1 110743994 110744305 -171449359 - MER58B DNA MER1_type -15 326 2 234 383 54 20 chr1 110744307 110744456 -171449208 - L2 LINE L2 -224 3089 2936 383 293 169 22 chr1 110744473 110744698 -171448966 - MIR SINE MIR 0 262 5 297 374 41 12 chr1 110745061 110745232 -171448432 - MER5B DNA MER1_type -1 177 2 268 338 22 15 chr1 110745301 110745437 -171448227 - L2 LINE L2 -939 2375 2239 812 339 121 71 chr1 110746329 110747211 -171446453 - HAL1 LINE L1 0 2507 1582 1193 269 77 21 chr1 110747332 110747711 -171445953 - L2 LINE L2 -2388 926 527 2241 135 5 27 chr1 110747715 110748086 -171445578 - THE1B LTR MaLR -1 363 1 10332 115 50 3 chr1 110748086 110749595 -171444069 - THE1B-int LTR MaLR 0 1580 1 2127 126 45 28 chr1 110749595 110749953 -171443711 - THE1B LTR MaLR 0 364 1 541 337 45 10 chr1 110749965 110750164 -171443500 - L2 LINE L2 -2801 513 308 28 86 0 0 chr1 110750347 110750417 -171443247 + AT_rich Low_complexity Low_complexity 1 70 0 897 335 28 20 chr1 110750465 110750865 -171442799 + L2 LINE L2 1431 1833 -1481 2426 268 52 30 chr1 110751103 110752191 -171441473 - L1MEc LINE L1 -4099 2297 1187 2375 171 93 9 chr1 110752291 110752731 -171440933 + Tigger7 DNA MER2_type 96 572 -161 1797 53 0 0 chr1 110752742 110752967 -171440697 - L1PA5 LINE L1 -2 6152 5928 1332 110 29 0 chr1 110752969 110753178 -171440486 + Tigger7 DNA MER2_type 2276 2490 -1 2577 281 72 19 chr1 110753182 110754160 -171439504 - L1MEc LINE L1 -5331 1065 37 25 0 0 0 chr1 110754653 110754678 -171438986 + AT_rich Low_complexity Low_complexity 1 25 0 292 265 0 0 chr1 110754974 110755057 -171438607 - L1M4 LINE L1 -1318 4828 4746 1018 315 21 7 chr1 110755063 110755352 -171438312 + LTR16C LTR ERVL 199 491 0 845 298 0 21 chr1 110755528 110755807 -171437857 - L1ME1 LINE L1 -5 6161 5889 825 276 62 7 chr1 110755954 110756359 -171437305 - L1MEc LINE L1 -2673 3542 3116 2056 159 75 5 chr1 110756365 110756737 -171436927 + MSTA LTR MaLR 1 398 -30 766 95 0 0 chr1 110756737 110756842 -171436822 - AluY SINE Alu -180 131 27 1710 253 74 25 chr1 110756970 110757682 -171435982 - L1MEc LINE L1 -3113 3102 2356 26 30 0 0 chr1 110757750 110757783 -171435881 + AT_rich Low_complexity Low_complexity 1 33 0 630 257 130 11 chr1 110757783 110758153 -171435511 - L1MEc LINE L1 -4250 2146 1733 6568 122 15 16 chr1 110758167 110759191 -171434473 - L1P LINE L1 -4713 1433 411 278 243 81 40 chr1 110759319 110759467 -171434197 - L1M4 LINE L1 -3104 3042 2889 415 264 66 0 chr1 110759518 110759639 -171434025 - MER58A DNA MER1_type 0 140 12 4853 96 38 8 chr1 110759874 110760617 -171433047 - L1MA1 LINE L1 0 6302 5538 21 0 0 0 chr1 110760738 110760759 -171432905 + AT_rich Low_complexity Low_complexity 1 21 0 286 330 43 17 chr1 110761600 110761715 -171431949 - MER91C DNA MER1_type -21 119 2 309 310 23 39 chr1 110761905 110762034 -171431630 + MIR SINE MIR 74 200 -62 198 71 0 0 chr1 110763812 110763840 -171429824 + (TA)n Simple_repeat Simple_repeat 2 29 0 1763 165 10 7 chr1 110764371 110764674 -171428990 - AluJo SINE Alu -2 310 7 225 0 0 0 chr1 110764788 110764813 -171428851 + (T)n Simple_repeat Simple_repeat 1 25 0 233 356 66 59 chr1 110765361 110765802 -171427862 - L2 LINE L2 -446 2868 2425 873 278 100 14 chr1 110766678 110767109 -171426555 - MER113 DNA MER1_type? -4 517 50 326 365 167 14 chr1 110767207 110767555 -171426109 + L2 LINE L2 2872 3272 0 564 112 0 0 chr1 110767656 110767745 -171425919 + L1MB3 LINE L1 6087 6175 -8 21 36 0 0 chr1 110767773 110767801 -171425863 + AT_rich Low_complexity Low_complexity 1 28 0 1670 31 0 0 chr1 110768204 110768398 -171425266 - L1PA3 LINE L1 -3 6152 5959 2625 8 0 0 chr1 110768398 110768748 -171424916 + L1P1 LINE L1 5209 5558 -597 27 0 0 0 chr1 110768748 110768775 -171424889 + AT_rich Low_complexity Low_complexity 1 27 0 459 249 93 34 chr1 110769364 110769569 -171424095 + L2 LINE L2 3096 3312 -1 24 0 0 0 chr1 110769617 110769641 -171424023 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 110769849 110769887 -171423777 + AT_rich Low_complexity Low_complexity 1 38 0 30 89 0 0 chr1 110769944 110770023 -171423641 + AT_rich Low_complexity Low_complexity 1 79 0 2356 100 0 0 chr1 110770125 110770425 -171423239 - AluSc SINE Alu -8 301 2 1868 174 0 0 chr1 110770487 110770797 -171422867 - AluSx SINE Alu -2 310 1 360 329 77 74 chr1 110771021 110771319 -171422345 + HAL1 LINE L1 1 299 -2208 21 0 0 0 chr1 110771375 110771396 -171422268 + AT_rich Low_complexity Low_complexity 1 21 0 3324 148 36 43 chr1 110772363 110773038 -171420626 + L1MA4 LINE L1 5623 6292 -8 21 36 0 0 chr1 110773039 110773067 -171420597 + AT_rich Low_complexity Low_complexity 1 28 0 254 279 12 58 chr1 110774207 110774293 -171419371 + MIR SINE MIR 28 109 -153 6061 69 2 6 chr1 110774429 110775241 -171418423 + L1PA7 LINE L1 5346 6154 0 506 30 30 0 chr1 110775245 110775312 -171418352 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 357 312 133 20 chr1 110775869 110776170 -171417494 + L1M4 LINE L1 4493 4827 -1319 403 322 135 10 chr1 110776191 110776399 -171417265 - MIR SINE MIR -16 246 13 1919 215 35 35 chr1 110776429 110776951 -171416713 + Charlie1b DNA MER1_type 1 522 -1 273 250 33 17 chr1 110777281 110777401 -171416263 + (TA)n Simple_repeat Simple_repeat 1 122 0 448 234 48 24 chr1 110777411 110777535 -171416129 + Charlie1 DNA MER1_type 37 163 -2598 2088 108 3 20 chr1 110777871 110778168 -171415496 - AluSg SINE Alu -18 292 1 1528 197 33 7 chr1 110778168 110778467 -171415197 - AluJb SINE Alu -5 307 1 302 233 82 38 chr1 110778601 110778760 -171414904 + L1ME4a LINE L1 5939 6104 -17 21 82 0 0 chr1 110779017 110779066 -171414598 + AT_rich Low_complexity Low_complexity 1 49 0 2176 144 41 6 chr1 110780376 110780738 -171412926 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr1 110780936 110780960 -171412704 + AT_rich Low_complexity Low_complexity 1 24 0 226 263 81 10 chr1 110781063 110781162 -171412502 + L1MC/D LINE L1 5614 5719 -2089 202 180 66 0 chr1 110781289 110781350 -171412314 + (TATAA)n Simple_repeat Simple_repeat 3 67 0 1725 122 86 43 chr1 110781351 110781629 -171412035 + AluSx SINE Alu 1 290 -22 282 300 45 27 chr1 110782092 110782202 -171411462 + L2 LINE L2 3137 3248 -24 21 57 0 0 chr1 110782213 110782248 -171411416 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr1 110782318 110782351 -171411313 + AT_rich Low_complexity Low_complexity 1 33 0 1658 189 11 0 chr1 110782470 110782784 -171410880 - AluJo SINE Alu 0 317 1 239 347 31 20 chr1 110782919 110783017 -171410647 + MIR SINE MIR 30 128 -80 2672 158 8 1 chr1 110783089 110783514 -171410150 - MSTA LTR MaLR -2 416 3 271 296 0 0 chr1 110784212 110784310 -171409354 + L1ME LINE L1 39 136 -6260 2226 295 29 10 chr1 110784311 110785132 -171408532 + L1ME LINE L1 172 1008 -5388 6071 60 158 69 chr1 110785132 110786212 -171407452 + MER11A LTR ERVK 1 1266 0 686 304 61 7 chr1 110786224 110786665 -171406999 + L1ME LINE L1 1012 1476 -4920 322 91 146 0 chr1 110786667 110786722 -171406942 + MSTB1 LTR MaLR 1 63 -394 844 162 7 0 chr1 110786733 110786869 -171406795 + FAM SINE Alu 21 157 -28 210 91 0 0 chr1 110786869 110786902 -171406762 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1150 174 51 0 chr1 110786914 110787110 -171406554 + MSTB1 LTR MaLR 41 246 -186 270 206 15 29 chr1 110787119 110787187 -171406477 + L1ME LINE L1 2738 2804 -3411 * 694 263 20 25 chr1 110787183 110787431 -171406233 + L1ME LINE L1 5389 5628 -624 791 313 163 6 chr1 110788179 110788511 -171405153 - L2 LINE L2 -3 3310 2927 21261 167 23 17 chr1 110788532 110791978 -171401686 - L1MA3 LINE L1 0 7724 4300 1812 159 38 30 chr1 110791978 110792350 -171401314 + THE1C LTR MaLR 1 375 0 21261 167 23 17 chr1 110792350 110793131 -171400533 - L1MA3 LINE L1 -3424 4300 3525 186 43 0 0 chr1 110793131 110793154 -171400510 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 21261 167 23 17 chr1 110793154 110796570 -171397094 - L1MA3 LINE L1 -4199 3525 16 827 308 170 39 chr1 110796570 110797106 -171396558 - L2 LINE L2 -396 2918 2313 1723 280 47 6 chr1 110797706 110798221 -171395443 - L2 LINE L2 -995 2319 1784 5642 67 21 16 chr1 110798233 110799023 -171394641 + SVA Other Other 1 794 -592 330 26 0 0 chr1 110799907 110799946 -171393718 + (ATG)n Simple_repeat Simple_repeat 3 41 0 22 35 0 0 chr1 110800992 110801021 -171392643 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 110802171 110802192 -171391472 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 110802550 110802583 -171391081 + AT_rich Low_complexity Low_complexity 1 33 0 496 298 0 37 chr1 110804071 110804259 -171389405 - MIR SINE MIR -34 228 48 552 303 71 62 chr1 110804655 110804979 -171388685 + Charlie8 DNA MER1_type 1 272 -2145 202 310 80 126 chr1 110805518 110805863 -171387801 + L2 LINE L2 2926 3255 -17 2155 101 0 52 chr1 110805863 110806169 -171387495 + AluSx SINE Alu 1 290 -22 202 310 80 126 chr1 110806169 110806187 -171387477 + L2 LINE L2 3255 3272 0 236 279 35 0 chr1 110806353 110806439 -171387225 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 490 235 40 20 chr1 110806748 110806897 -171386767 - L1ME3A LINE L1 -80 6090 5939 32 43 0 0 chr1 110806989 110807035 -171386629 + AT_rich Low_complexity Low_complexity 1 46 0 1410 87 6 0 chr1 110807338 110807521 -171386143 + LTR12 LTR ERV1 87 270 -444 356 238 42 0 chr1 110807521 110807626 -171386038 + LTR30 LTR ERV1 544 642 -80 1918 65 0 0 chr1 110807631 110807862 -171385802 + LTR12 LTR ERV1 484 714 0 2519 215 67 40 chr1 110808587 110809546 -171384118 + L1MDa LINE L1 1005 1989 -4551 616 253 89 85 chr1 110809801 110810318 -171383346 - MLT1G1 LTR MaLR -19 523 18 1371 192 89 65 chr1 110810403 110810831 -171382833 - LTR8A LTR ERV1 -2 725 288 992 182 12 165 chr1 110810933 110810975 -171382689 - LTR8 LTR ERV1 -462 229 182 1974 152 30 33 chr1 110810975 110811338 -171382326 - THE1B LTR MaLR 0 364 3 992 182 12 165 chr1 110811338 110811587 -171382077 - LTR8 LTR ERV1 -509 182 1 273 386 0 0 chr1 110812050 110812151 -171381513 - MLT1-int LTR MaLR -509 862 762 1793 173 26 10 chr1 110812829 110813135 -171380529 - AluJo SINE Alu -1 311 1 205 388 94 0 chr1 110813348 110813433 -171380231 - L2 LINE L2 -216 3097 3005 228 266 78 0 chr1 110813867 110813931 -171379733 + L2 LINE L2 3245 3313 0 704 213 14 66 chr1 110814466 110814677 -171378987 + MER3 DNA MER1_type 10 209 0 3621 134 6 42 chr1 110814684 110815309 -171378355 + LTR26 LTR ERV1 1 603 0 586 291 31 106 chr1 110815340 110815774 -171377890 + L2 LINE L2 2897 3297 -16 2069 154 0 0 chr1 110815774 110816079 -171377585 + AluSx SINE Alu 1 305 -7 586 291 31 106 chr1 110816079 110816095 -171377569 + L2 LINE L2 3297 3313 0 199 400 17 0 chr1 110816220 110816335 -171377329 - L2 LINE L2 -285 2987 2871 192 77 0 0 chr1 110817348 110817374 -171376290 + (A)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr1 110818241 110818272 -171375392 + AT_rich Low_complexity Low_complexity 1 31 0 1870 179 0 0 chr1 110818911 110819194 -171374470 + AluSx SINE Alu 4 289 -23 387 0 0 0 chr1 110819194 110819237 -171374427 + (TA)n Simple_repeat Simple_repeat 1 43 0 1870 179 0 0 chr1 110819237 110819254 -171374410 + AluSx SINE Alu 288 304 -8 453 223 19 0 chr1 110820276 110820379 -171373285 + MER94 DNA DNA 19 123 -11 1295 252 53 17 chr1 110820990 110821351 -171372313 + MER87 LTR ERV1 168 541 0 21 36 0 0 chr1 110822021 110822049 -171371615 + AT_rich Low_complexity Low_complexity 1 28 0 527 294 85 14 chr1 110823455 110823666 -171369998 + MIR SINE MIR 37 262 0 1942 103 4 0 chr1 110823823 110824085 -171369579 + AluSx SINE Alu 49 311 -1 24 0 0 0 chr1 110824120 110824144 -171369520 + AT_rich Low_complexity Low_complexity 1 24 0 573 228 16 1 chr1 110824177 110824330 -171369334 + L1ME1 LINE L1 6021 6184 0 2027 147 0 13 chr1 110825471 110825784 -171367880 + AluSx SINE Alu 1 309 -3 330 26 0 0 chr1 110826787 110826826 -171366838 + (ATG)n Simple_repeat Simple_repeat 3 41 0 327 73 0 0 chr1 110827344 110827385 -171366279 - Alu SINE Alu -261 41 1 790 265 102 3 chr1 110827385 110827679 -171365985 - L1M4 LINE L1 -1814 4332 4010 5445 98 10 32 chr1 110827798 110828621 -171365043 - L1PA15 LINE L1 -3 6162 5358 1314 290 126 26 chr1 110828640 110829681 -171363983 - L1M4 LINE L1 -2143 4003 2859 1408 187 18 22 chr1 110829681 110829954 -171363710 + MLT2C2 LTR ERVL 1 272 -192 527 165 19 10 chr1 110829973 110830076 -171363588 + Tigger2 DNA MER2_type 2 105 -2613 4641 164 19 41 chr1 110830082 110830951 -171362713 - L1PB4 LINE L1 0 6156 5270 2297 116 3 0 chr1 110830951 110831262 -171362402 - AluSq SINE Alu -1 312 1 4641 164 19 41 chr1 110831262 110831453 -171362211 - L1PB4 LINE L1 -886 5270 5076 396 0 0 0 chr1 110831453 110831497 -171362167 + (TG)n Simple_repeat Simple_repeat 1 44 0 4641 164 19 41 chr1 110831497 110832208 -171361456 - L1PB4 LINE L1 -1080 5076 4407 7377 165 24 51 chr1 110832213 110832464 -171361200 + Tigger2 DNA MER2_type 87 343 -2375 11628 143 19 16 chr1 110832464 110834841 -171358823 + L1PA10 LINE L1 3372 5783 -385 2274 103 0 13 chr1 110834841 110835151 -171358513 + AluSg SINE Alu 1 306 -4 11628 143 19 16 chr1 110835151 110835537 -171358127 + L1PA10 LINE L1 5783 6167 -1 7377 165 24 51 chr1 110835537 110836290 -171357374 + Tigger2 DNA MER2_type 343 1115 -1603 1685 187 0 38 chr1 110836290 110836606 -171357058 + AluJo SINE Alu 1 304 -8 7377 165 24 51 chr1 110836606 110836984 -171356680 + Tigger2 DNA MER2_type 1115 1429 -1289 1364 223 10 31 chr1 110836984 110837275 -171356389 - AluJo SINE Alu -27 285 1 7377 165 24 51 chr1 110837275 110837368 -171356296 + Tigger2 DNA MER2_type 1429 1523 -1195 26667 42 40 2 chr1 110837378 110840749 -171352915 + L1PA2 LINE L1 12 3508 -2638 7580 25 1 3 chr1 110840749 110841761 -171351903 + L1PA2 LINE L1 5146 6155 0 7120 162 20 8 chr1 110841768 110842960 -171350704 + Tigger2 DNA MER2_type 1512 2718 0 298 160 0 0 chr1 110842960 110843007 -171350657 + MLT2C2 LTR ERVL 474 520 0 1377 226 30 32 chr1 110843008 110843441 -171350223 - L1M4 LINE L1 -3284 2862 2431 4437 101 20 14 chr1 110843475 110843733 -171349931 - L1MA3 LINE L1 0 6305 6048 2472 213 23 58 chr1 110843733 110844205 -171349459 - L1PA13 LINE L1 -117 6046 5627 1800 176 0 3 chr1 110844205 110844512 -171349152 - AluSx SINE Alu -6 306 1 2472 213 23 58 chr1 110844512 110844927 -171348737 - L1PA13 LINE L1 -536 5627 5199 247 250 11 22 chr1 110846044 110846136 -171347528 + (TA)n Simple_repeat Simple_repeat 1 91 0 321 259 60 26 chr1 110846580 110846696 -171346968 + MLT1I LTR MaLR 12 131 -278 599 290 84 5 chr1 110846828 110847042 -171346622 - MIR SINE MIR -25 237 7 1815 194 48 8 chr1 110847056 110847407 -171346257 + MLT1A1 LTR MaLR 1 365 0 551 129 10 0 chr1 110948391 110948492 -171245172 + L1PA16 LINE L1 6061 6162 -4 4932 145 25 27 chr1 110948533 110948813 -171244851 + L1MA4 LINE L1 5386 5665 -635 1660 98 68 0 chr1 110948813 110949048 -171244616 + AluSc SINE Alu 41 291 -18 4932 145 25 27 chr1 110949048 110949684 -171243980 + L1MA4 LINE L1 5665 6300 0 408 261 200 11 chr1 110952192 110952372 -171241292 - MIR SINE MIR -12 250 37 686 309 19 15 chr1 110952623 110952882 -171240782 - MIR SINE MIR 0 262 3 22 0 0 0 chr1 110953005 110953027 -171240637 + AT_rich Low_complexity Low_complexity 1 22 0 421 286 8 0 chr1 110953048 110953167 -171240497 - MIR SINE MIR -48 214 95 219 206 0 103 chr1 110954839 110954907 -171238757 - L2 LINE L2 -12 3260 3200 225 0 0 0 chr1 110955890 110955915 -171237749 + (TG)n Simple_repeat Simple_repeat 2 26 0 1473 211 100 92 chr1 110956144 110956883 -171236781 - LTR1B LTR ERV1 -81 745 1 234 329 118 0 chr1 110956982 110957067 -171236597 - L2 LINE L2 -35 3237 3143 251 35 379 0 chr1 110957094 110957152 -171236512 - MADE1 DNA Mariner 0 80 1 389 248 135 4 chr1 110957339 110957569 -171236095 + L1ME4a LINE L1 5691 5950 -171 5156 90 5 11 chr1 110957642 110958401 -171235263 - L1PA8A LINE L1 -3 6443 5689 24075 149 17 15 chr1 110958501 110961889 -171231775 - L1PA8A LINE L1 -756 5705 2326 2198 137 0 3 chr1 110961889 110962202 -171231462 - AluSq SINE Alu -1 312 1 24075 149 17 15 chr1 110962202 110963251 -171230413 - L1PA8A LINE L1 -4135 2326 1281 234 0 0 0 chr1 110963251 110963277 -171230387 + (ATG)n Simple_repeat Simple_repeat 1 26 0 24075 149 17 15 chr1 110963277 110964410 -171229254 - L1PA8A LINE L1 -5180 1281 2 792 246 22 15 chr1 110964413 110964685 -171228979 - L1ME LINE L1 -608 5627 5354 23 33 0 0 chr1 110964693 110964723 -171228941 + AT_rich Low_complexity Low_complexity 1 30 0 1370 212 36 33 chr1 110964756 110965058 -171228606 + AluJo SINE Alu 1 303 -9 2605 260 93 18 chr1 110965133 110966332 -171227332 - L1ME LINE L1 -5023 1373 84 22 0 0 0 chr1 110966613 110966635 -171227029 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 110966793 110966828 -171226836 + AT_rich Low_complexity Low_complexity 1 35 0 315 340 147 5 chr1 110968285 110968476 -171225188 + MIR SINE MIR 18 235 -27 2151 113 0 20 chr1 110968829 110969131 -171224533 + AluSq SINE Alu 1 296 -17 22 35 0 0 chr1 110970299 110970328 -171223336 + AT_rich Low_complexity Low_complexity 1 29 0 1308 261 80 39 chr1 110970514 110971000 -171222664 + L2 LINE L2 2806 3311 -2 360 221 53 21 chr1 110971369 110971464 -171222200 - MIR SINE MIR -26 236 139 1053 152 10 10 chr1 110971464 110971661 -171222003 + MLT1B LTR MaLR 1 197 -193 286 89 0 71 chr1 110971672 110971728 -171221936 - MLT2B1 LTR ERVL 0 520 469 571 217 149 83 chr1 110971886 110972194 -171221470 - MLT2D LTR ERVL -73 341 1 2933 170 16 0 chr1 110972240 110972753 -171220911 + Tigger7 DNA MER2_type 1 521 -212 480 146 34 0 chr1 110972752 110972841 -171220823 + Tigger7 DNA MER2_type 2496 2587 0 * 5638 147 49 45 chr1 110972845 110973954 -171219710 - ERVL-D LTR ERVL -57 5707 4595 563 167 0 58 chr1 110973958 110974078 -171219586 + MLT1B LTR MaLR 204 316 -74 633 76 0 0 chr1 110974120 110974212 -171219452 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 202 302 0 0 chr1 110974218 110974271 -171219393 - MIR SINE MIR -139 123 71 24 67 0 0 chr1 110975144 110975189 -171218475 + AT_rich Low_complexity Low_complexity 1 45 0 1760 171 14 11 chr1 110975228 110975514 -171218150 - AluJo SINE Alu -25 287 1 548 294 0 12 chr1 110975882 110976045 -171217619 - MER45A DNA AcHobo 0 178 18 295 294 35 28 chr1 110977029 110977172 -171216492 + MLT1J LTR MaLR 6 149 -362 891 273 180 22 chr1 110977948 110978527 -171215137 + Charlie2b DNA MER1_type 1 670 -2112 1255 184 75 3 chr1 110978665 110978970 -171214694 + Charlie2a DNA MER1_type 1542 1868 -994 612 301 71 28 chr1 110979040 110979436 -171214228 + LTR16B LTR ERVL 34 446 -18 246 191 235 0 chr1 110979444 110979512 -171214152 + Charlie2a DNA MER1_type 1871 1954 -908 223 336 0 0 chr1 110980489 110980593 -171213071 + (TA)n Simple_repeat Simple_repeat 2 105 0 433 340 133 23 chr1 110981212 110981477 -171212187 + L2 LINE L2 2837 3072 -241 1851 184 43 45 chr1 110981477 110981945 -171211719 + MLT1C LTR MaLR 1 467 0 433 340 133 23 chr1 110981945 110982109 -171211555 + L2 LINE L2 3072 3313 0 200 319 17 17 chr1 110982717 110982833 -171210831 + (CATATA)n Simple_repeat Simple_repeat 2 117 0 184 220 20 40 chr1 110983055 110983105 -171210559 - MIR SINE MIR -115 147 99 22 56 0 0 chr1 110983484 110983520 -171210144 + AT_rich Low_complexity Low_complexity 1 36 0 671 232 142 0 chr1 110983937 110984127 -171209537 - MER20 DNA MER1_type 0 219 3 245 280 42 25 chr1 110984225 110984282 -171209382 + MLT1K LTR MaLR 461 516 -72 198 0 0 0 chr1 110984282 110984304 -171209360 + (TA)n Simple_repeat Simple_repeat 2 23 0 245 280 42 25 chr1 110984304 110984364 -171209300 + MLT1K LTR MaLR 516 580 -8 1012 209 115 0 chr1 110984367 110984645 -171209019 + L1MB7 LINE L1 4890 5199 -947 3423 154 66 25 chr1 110984672 110985432 -171208232 + L1MB7 LINE L1 5265 6055 -129 346 296 87 68 chr1 110985432 110985787 -171207877 + L1MC4a LINE L1 5730 6091 -1717 332 171 225 18 chr1 110985903 110986014 -171207650 - MIR SINE MIR -34 228 95 1732 184 46 34 chr1 110986024 110986437 -171207227 - LTR52 LTR ERVL -3 418 1 251 261 141 0 chr1 110986739 110986831 -171206833 + L2 LINE L2 3190 3294 -19 198 176 0 0 chr1 110987395 110987446 -171206218 + (TA)n Simple_repeat Simple_repeat 1 51 0 419 310 96 5 chr1 110988043 110988230 -171205434 + MIR SINE MIR 51 254 -8 210 171 0 0 chr1 110988751 110988792 -171204872 + (TATG)n Simple_repeat Simple_repeat 1 41 0 312 197 45 0 chr1 110989579 110989645 -171204019 - L2 LINE L2 -5 3308 3240 384 269 96 12 chr1 110989909 110989963 -171203701 + L1MEc LINE L1 36 84 -6312 279 0 0 0 chr1 110989963 110989994 -171203670 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 384 269 96 12 chr1 110989994 110990106 -171203558 + L1MEc LINE L1 84 216 -6180 1828 144 6 46 chr1 110990116 110990462 -171203202 + MLT1B LTR MaLR 40 371 -19 2480 152 31 2 chr1 110990464 110990878 -171202786 - MSTB LTR MaLR 0 426 1 918 281 81 0 chr1 110990894 110991229 -171202435 + L1MEc LINE L1 213 574 -5822 216 0 0 0 chr1 110991275 110991299 -171202365 + (A)n Simple_repeat Simple_repeat 1 24 0 3530 182 20 10 chr1 110991420 110992551 -171201113 - L1PA16 LINE L1 -321 5845 4691 210 37 0 0 chr1 110992551 110992578 -171201086 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3530 182 20 10 chr1 110992578 110992821 -171200843 - L1PA16 LINE L1 -1475 4691 4452 3139 75 27 16 chr1 110992824 110993267 -171200397 - LTR7 LTR ERV1 -2 448 1 1755 72 11 18 chr1 110993267 110993544 -171200120 - HERVH LTR ERV1 0 7713 7439 1253 211 70 0 chr1 110993655 110993953 -171199711 + MSTD LTR MaLR 70 388 -8 1581 271 11 9 chr1 110993963 110994487 -171199177 - L1M4 LINE L1 -1300 4846 4322 * 2306 189 37 43 chr1 110994476 110994682 -171198982 + L1 LINE L1 4155 4361 -1785 530 14 0 42 chr1 110994682 110994754 -171198910 + (TCTCCC)n Simple_repeat Simple_repeat 4 72 0 6863 62 5 29 chr1 110994754 110996221 -171197443 + SVA Other Other 71 1386 0 2306 189 37 43 chr1 110996221 110996663 -171197001 + L1 LINE L1 4359 4801 -1345 792 266 41 35 chr1 110996792 110997131 -171196533 - L1MDa LINE L1 -6142 398 58 207 176 0 0 chr1 110997362 110997396 -171196268 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 427 338 130 38 chr1 110997479 110997878 -171195786 + L2 LINE L2 2420 2855 -459 1012 312 70 47 chr1 110998044 110998266 -171195398 - L2 LINE L2 -1 3312 3097 378 61 0 0 chr1 110998266 110998315 -171195349 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1012 312 70 47 chr1 110998315 110998837 -171194827 - L2 LINE L2 -216 3097 2564 537 92 9 55 chr1 110999037 110999146 -171194518 - SVA Other Other -823 563 460 235 197 94 128 chr1 110999150 110999384 -171194280 - L1ME3A LINE L1 -183 5987 5762 1271 230 106 37 chr1 110999384 110999892 -171193772 + MER34C LTR ERV1 37 579 -6 903 226 131 1 chr1 110999896 111000167 -171193497 - L1ME3A LINE L1 -405 5765 5450 2420 65 0 16 chr1 111001122 111001430 -171192234 + AluY SINE Alu 2 304 -7 240 281 0 0 chr1 111005196 111005260 -171188404 - MIR SINE MIR -2 260 197 229 287 79 54 chr1 111005947 111006212 -171187452 - L1ME4a LINE L1 -9 6112 5830 2253 107 3 0 chr1 111006212 111006520 -171187144 + AluSq SINE Alu 5 313 0 229 287 79 54 chr1 111006520 111006697 -171186967 - L1ME4a LINE L1 -291 5830 5659 398 294 29 0 chr1 111007585 111007687 -171185977 - L2 LINE L2 -2 3311 3207 819 172 0 22 chr1 111009735 111009869 -171183795 - FLAM_C SINE Alu 0 133 3 318 270 127 16 chr1 111010416 111010542 -171183122 - L3 LINE CR1 -1 1576 1437 633 277 72 40 chr1 111010891 111011140 -171182524 + MLT1J LTR MaLR 83 339 -172 279 54 0 0 chr1 111011197 111011234 -171182430 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 318 308 199 26 chr1 111011370 111011636 -171182028 + L1 LINE L1 2666 2977 -3169 1631 217 74 90 chr1 111011639 111012409 -171181255 + L1MC5 LINE L1 6685 7442 -519 229 253 0 25 chr1 111012419 111012498 -171181166 + L1MC5 LINE L1 7386 7462 -499 260 161 16 0 chr1 111012509 111012571 -171181093 + GA-rich Low_complexity Low_complexity 1 63 0 356 240 69 46 chr1 111012624 111012799 -171180865 + L1MC5 LINE L1 7738 7916 -45 195 377 35 0 chr1 111013880 111013994 -171179670 + MIR SINE MIR 81 198 -64 652 203 17 0 chr1 111014657 111014775 -171178889 + FLAM_A SINE Alu 1 120 -13 1813 296 77 10 chr1 111015499 111016198 -171177466 + L2 LINE L2 1086 1831 -1483 295 248 128 8 chr1 111016335 111016452 -171177212 - MIR SINE MIR -34 228 98 640 305 99 63 chr1 111017227 111017703 -171175961 + L2 LINE L2 2363 2855 -459 934 308 52 6 chr1 111017740 111018088 -171175576 + L2 LINE L2 2950 3313 0 671 326 70 0 chr1 111018953 111019180 -171174484 - MIR SINE MIR -18 244 2 235 284 15 0 chr1 111019319 111019386 -171174278 + MIR SINE MIR 183 250 -12 231 339 27 9 chr1 111019837 111019949 -171173715 - MIR SINE MIR -109 153 40 206 360 90 17 chr1 111020033 111020211 -171173453 - L2 LINE L2 -215 3057 2867 1006 330 26 50 chr1 111021519 111022144 -171171520 + L1PA13 LINE L1 788 1397 -6177 327 265 20 10 chr1 111022271 111022369 -171171295 + L1PA13 LINE L1 2084 2182 -5399 452 133 0 40 chr1 111022780 111022855 -171170809 - MSTA LTR MaLR -354 74 3 2955 139 15 29 chr1 111022857 111023376 -171170288 + L1PA16 LINE L1 5646 6157 -9 912 145 18 44 chr1 111023679 111023850 -171169814 + L1PA16 LINE L1 5815 6002 -152 347 239 130 36 chr1 111024619 111024757 -171168907 + L2 LINE L2 3163 3313 0 265 349 0 0 chr1 111024967 111025050 -171168614 + L2 LINE L2 3190 3272 0 1968 139 0 14 chr1 111025742 111026037 -171167627 + AluSx SINE Alu 1 291 -21 250 176 0 135 chr1 111026859 111026883 -171166781 + L2 LINE L2 3250 3276 -37 1734 187 33 0 chr1 111026883 111027215 -171166449 - MER2 DNA MER2_type 0 344 2 250 176 0 135 chr1 111027215 111027247 -171166417 + L2 LINE L2 3276 3296 -17 2018 118 50 0 chr1 111027247 111027526 -171166138 + AluSg SINE Alu 1 293 -17 250 176 0 135 chr1 111027526 111027542 -171166122 + L2 LINE L2 3296 3313 0 221 241 0 0 chr1 111027678 111027736 -171165928 + (TTCA)n Simple_repeat Simple_repeat 4 61 0 23 0 0 0 chr1 111028115 111028138 -171165526 + AT_rich Low_complexity Low_complexity 1 23 0 27280 120 24 40 chr1 111028138 111029188 -171164476 - L1PA8 LINE L1 -2 6444 5378 1956 134 41 0 chr1 111029188 111029480 -171164184 - AluSg1 SINE Alu -5 304 1 27280 120 24 40 chr1 111029480 111031026 -171162638 - L1PA8 LINE L1 -1068 5378 3808 765 170 14 7 chr1 111031026 111031173 -171162491 - LTR5 LTR ERVK 0 969 822 27280 120 24 40 chr1 111031173 111034929 -171158735 - L1PA8 LINE L1 -2638 3808 3 550 305 35 27 chr1 111035299 111035555 -171158109 - MIR SINE MIR -2 260 3 199 412 70 0 chr1 111035804 111035918 -171157746 - MIR SINE MIR -67 141 20 4985 163 61 18 chr1 111036032 111036183 -171157481 - L1MA9 LINE L1 0 6200 6057 2207 135 28 25 chr1 111036183 111036546 -171157118 + THE1B LTR MaLR 1 364 0 11072 104 16 3 chr1 111036546 111038106 -171155558 + THE1B-int LTR MaLR 1 1580 0 2053 157 28 25 chr1 111038106 111038469 -171155195 + THE1B LTR MaLR 1 364 0 4985 163 61 18 chr1 111038469 111039857 -171153807 - L1MA9 LINE L1 -142 6058 4592 3164 176 18 5 chr1 111039870 111040474 -171153190 - L1MA9 LINE L1 -1785 4249 3638 1912 224 44 8 chr1 111040472 111041091 -171152573 - L1MA9 LINE L1 -4609 1356 712 * 549 294 130 28 chr1 111041151 111041512 -171152152 - L1MA9 LINE L1 -5210 745 348 625 271 7 7 chr1 111041621 111041761 -171151903 + MIR SINE MIR 12 151 -111 1299 164 86 71 chr1 111041779 111041865 -171151799 + L1MA8 LINE L1 5923 6006 -285 2385 94 120 8 chr1 111041865 111042248 -171151416 - MSTA LTR MaLR -2 426 1 1299 164 86 71 chr1 111042248 111042491 -171151173 + L1MA8 LINE L1 6006 6261 -30 1637 65 5 5 chr1 111042491 111042718 -171150946 - AluY SINE Alu 0 307 81 1299 164 86 71 chr1 111042718 111042746 -171150918 + L1MA8 LINE L1 6261 6287 -4 1602 213 73 23 chr1 111042830 111043271 -171150393 - MLT1C LTR MaLR -4 463 1 510 205 9 18 chr1 111043358 111043470 -171150194 - MLT1C LTR MaLR -356 111 1 603 345 73 4 chr1 111043827 111044059 -171149605 - MIR SINE MIR 0 262 15 345 65 0 0 chr1 111044062 111044108 -171149556 - U5 snRNA snRNA -70 46 1 633 359 40 28 chr1 111044450 111044921 -171148743 - L2 LINE L2 -576 2738 2262 * 1034 276 44 92 chr1 111044918 111045652 -171148012 + L2 LINE L2 2609 3313 0 489 274 224 0 chr1 111045666 111045845 -171147819 - L2 LINE L2 0 3313 3095 454 354 85 28 chr1 111045925 111046278 -171147386 - L2 LINE L2 -1192 2122 1750 186 103 0 0 chr1 111046386 111046415 -171147249 + (TC)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr1 111046415 111046444 -171147220 + (CA)n Simple_repeat Simple_repeat 1 29 0 439 301 52 7 chr1 111046765 111046901 -171146763 - MIR3 SINE MIR -64 144 3 241 232 61 12 chr1 111047138 111047220 -171146444 + L1MC5 LINE L1 5255 5340 -2468 763 249 124 0 chr1 111047234 111047427 -171146237 - MLT1F1 LTR MaLR 0 567 351 3008 39 13 0 chr1 111047586 111047974 -171145690 - L1PA4 LINE L1 -743 5403 5011 6036 35 4 9 chr1 111047974 111048715 -171144949 + L1PA4 LINE L1 5419 6155 0 357 156 13 0 chr1 111048733 111048810 -171144854 + Charlie2 DNA MER1_type 2079 2156 -706 857 236 42 85 chr1 111049091 111049535 -171144129 + L1MC5 LINE L1 6536 6939 -869 274 184 19 63 chr1 111049546 111049704 -171143960 + (TATAA)n Simple_repeat Simple_repeat 3 153 0 1323 237 79 86 chr1 111049708 111050182 -171143482 + L1MC5 LINE L1 6971 7436 -525 1591 162 0 60 chr1 111050182 111050484 -171143180 - AluJb SINE Alu -8 304 21 1323 237 79 86 chr1 111050484 111050959 -171142705 + L1MC5 LINE L1 7436 7913 -48 2225 204 14 7 chr1 111050991 111051408 -171142256 - MSTB LTR MaLR -1 425 6 933 192 0 30 chr1 111052458 111052625 -171141039 - AluJo SINE Alu -150 162 1 337 333 78 85 chr1 111053357 111053934 -171139730 - L2 LINE L2 0 3272 2685 411 281 132 21 chr1 111054724 111054966 -171138698 - L1ME LINE L1 -301 5820 5552 797 214 12 6 chr1 111055300 111055473 -171138191 - MER5B DNA MER1_type 0 178 5 1056 283 79 9 chr1 111057585 111057938 -171135726 - L1ME1 LINE L1 -50 6116 5742 319 306 186 11 chr1 111058010 111058193 -171135471 + MIR SINE MIR 37 251 -11 259 139 0 0 chr1 111059215 111059258 -171134406 + MER116 DNA Mariner 38 80 0 1262 230 49 41 chr1 111059359 111059746 -171133918 + MLT1B LTR MaLR 1 390 0 1790 167 6 13 chr1 111060339 111060651 -171133013 - AluJo SINE Alu -2 310 1 283 318 81 40 chr1 111060861 111061009 -171132655 + MIR3 SINE MIR 32 185 -23 33 29 0 29 chr1 111061351 111061380 -171132284 + AT_rich Low_complexity Low_complexity 1 29 -38 2032 106 3 36 chr1 111061380 111061682 -171131982 + AluSq SINE Alu 1 292 -21 33 29 0 29 chr1 111061682 111061702 -171131962 + AT_rich Low_complexity Low_complexity 29 50 -17 1621 193 7 3 chr1 111061702 111061987 -171131677 + AluJo SINE Alu 1 286 -26 33 29 0 29 chr1 111061987 111062005 -171131659 + AT_rich Low_complexity Low_complexity 50 67 0 236 313 87 27 chr1 111063405 111063555 -171130109 - MIR SINE MIR -96 166 8 322 168 31 0 chr1 111063919 111063990 -171129674 - MIR SINE MIR -54 154 81 21 0 0 0 chr1 111064106 111064127 -171129537 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 111064996 111065019 -171128645 + (TTG)n Simple_repeat Simple_repeat 2 24 0 289 312 136 7 chr1 111066463 111066617 -171127047 - MIR SINE MIR -10 252 79 685 253 103 5 chr1 111067055 111067249 -171126415 - MIR SINE MIR -31 231 19 359 245 29 49 chr1 111067385 111067487 -171126177 - L2 LINE L2 -1 3312 3213 326 305 91 101 chr1 111069076 111069478 -171124186 + L1M2 LINE L1 536 879 -5970 192 77 0 0 chr1 111069478 111069504 -171124160 + (CTCGG)n Simple_repeat Simple_repeat 1 26 0 326 305 91 101 chr1 111069504 111069826 -171123838 + L1M2 LINE L1 879 1203 -5646 24 32 0 0 chr1 111070584 111070615 -171123049 + AT_rich Low_complexity Low_complexity 1 31 0 372 43 0 0 chr1 111071085 111071131 -171122533 + (TA)n Simple_repeat Simple_repeat 1 46 0 344 342 35 10 chr1 111072140 111072342 -171121322 - MIR SINE MIR 0 262 56 306 0 0 0 chr1 111072479 111072513 -171121151 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr1 111072620 111072655 -171121009 + AT_rich Low_complexity Low_complexity 1 35 0 2365 86 0 3 chr1 111072750 111073051 -171120613 + AluY SINE Alu 1 300 -11 271 259 0 0 chr1 111073064 111073122 -171120542 + MIR SINE MIR 75 132 -130 188 365 26 77 chr1 111073239 111073395 -171120269 - L2 LINE L2 -8 3264 3117 202 250 0 0 chr1 111073415 111073459 -171120205 + (TA)n Simple_repeat Simple_repeat 1 44 0 310 272 0 25 chr1 111074587 111074668 -171118996 + MIR SINE MIR 20 98 -164 791 238 65 9 chr1 111074718 111074932 -171118732 + MIR SINE MIR 2 227 -35 205 314 12 93 chr1 111075205 111075377 -171118287 - MIR SINE MIR 0 262 105 191 309 95 0 chr1 111075364 111075448 -171118216 - MIR SINE MIR -14 248 157 * 282 326 11 0 chr1 111076026 111076118 -171117546 + CT-rich Low_complexity Low_complexity 2 94 0 195 253 72 0 chr1 111076269 111076352 -171117312 + MIR SINE MIR 108 196 -66 205 244 137 23 chr1 111076927 111077058 -171116606 + MIR SINE MIR 117 262 0 232 301 174 19 chr1 111077120 111077265 -171116399 - MIR SINE MIR -43 165 7 203 167 0 24 chr1 111077884 111077926 -171115738 + (TG)n Simple_repeat Simple_repeat 2 42 0 1503 117 9 5 chr1 111078709 111078932 -171114732 - L1PA15 LINE L1 -7 6158 5935 2765 102 8 0 chr1 111078933 111079324 -171114340 - L1PA15 LINE L1 -425 5740 5347 193 203 0 43 chr1 111079927 111079996 -171113668 + CT-rich Low_complexity Low_complexity 4 69 0 184 186 0 23 chr1 111080005 111080048 -171113616 - L2 LINE L2 -1 3312 3271 216 317 83 0 chr1 111080058 111080118 -171113546 - MIR SINE MIR -135 127 63 312 274 116 0 chr1 111080950 111081045 -171112619 - MIR3 SINE MIR -30 178 73 687 291 100 0 chr1 111081060 111081280 -171112384 - MIR SINE MIR -3 259 18 249 323 24 24 chr1 111082224 111082348 -171111316 + MIR3 SINE MIR 14 137 -71 429 334 134 31 chr1 111082361 111082711 -171110953 - L3 LINE CR1 -116 1461 1076 29 28 0 0 chr1 111083296 111083332 -171110332 + AT_rich Low_complexity Low_complexity 1 36 0 1991 128 33 10 chr1 111083784 111084089 -171109575 - AluSx SINE Alu 0 312 1 1385 135 50 4 chr1 111084208 111084638 -171109026 - LTR54 LTR ERV1 0 510 1 1924 246 26 13 chr1 111084675 111085127 -171108537 - LTR49-int LTR ERV1 -443 7094 6637 5201 224 72 57 chr1 111085215 111088210 -171105454 - LTR49-int LTR ERV1 -690 4181 1707 458 232 116 26 chr1 111088212 111088258 -171105406 + MER34 LTR ERV1 1 41 -737 3108 168 30 14 chr1 111088258 111088849 -171104815 - MER7C DNA MER2_type 0 602 2 458 232 116 26 chr1 111088849 111089064 -171104600 + MER34 LTR ERV1 41 367 -411 638 225 30 24 chr1 111089183 111089361 -171104303 - LTR49-int LTR ERV1 -3351 2912 851 1337 190 12 119 chr1 111089453 111089874 -171103790 - LTR49-int LTR ERV1 -6695 842 467 7345 15 6 5 chr1 111090236 111091096 -171102568 + L1PA2 LINE L1 5293 6153 -2 819 221 33 128 chr1 111091106 111091461 -171102203 - LTR49-int LTR ERV1 -3680 2266 1933 2578 106 140 39 chr1 111091477 111091940 -171101724 - LTR54 LTR ERV1 0 510 1 230 309 94 20 chr1 111092701 111092850 -171100814 - L2 LINE L2 -301 3012 2853 304 306 68 10 chr1 111094768 111094899 -171098765 - MIR SINE MIR -68 140 38 248 299 0 0 chr1 111095055 111095122 -171098542 + L2 LINE L2 3206 3272 0 295 313 62 10 chr1 111095304 111095400 -171098264 + MIR SINE MIR 32 132 -130 248 322 181 7 chr1 111095461 111095610 -171098054 - MIR SINE MIR -68 194 20 189 175 0 0 chr1 111095931 111095971 -171097693 + CT-rich Low_complexity Low_complexity 3 42 0 1204 166 64 61 chr1 111097309 111097622 -171096042 - MER33 DNA MER1_type -10 314 1 207 69 0 0 chr1 111098070 111098099 -171095565 + (T)n Simple_repeat Simple_repeat 1 29 0 263 313 161 0 chr1 111098200 111098312 -171095352 - L2 LINE L2 0 3272 3143 230 314 153 24 chr1 111099854 111100102 -171093562 + L2 LINE L2 1883 2162 -1152 189 373 0 20 chr1 111100394 111100496 -171093168 + L2 LINE L2 2854 2953 -319 482 230 24 16 chr1 111100513 111100639 -171093025 - MER94 DNA DNA -7 127 1 1033 279 97 45 chr1 111100972 111101548 -171092116 - MLT1L LTR MaLR 0 615 10 25 31 0 0 chr1 111103277 111103309 -171090355 + AT_rich Low_complexity Low_complexity 1 32 0 985 194 94 5 chr1 111103412 111103603 -171090061 + MIR SINE MIR 34 241 -21 32 43 0 0 chr1 111103635 111103681 -171089983 + AT_rich Low_complexity Low_complexity 1 46 0 183 80 0 0 chr1 111104433 111104458 -171089206 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 225 193 53 0 chr1 111105070 111105127 -171088537 + MER103 DNA DNA 3 62 -104 457 313 34 14 chr1 111105275 111105422 -171088242 + MIR SINE MIR 28 177 -85 526 92 0 35 chr1 111105456 111105543 -171088121 - L1MA3 LINE L1 0 6305 6222 21 0 0 0 chr1 111105943 111105964 -171087700 + AT_rich Low_complexity Low_complexity 1 21 0 399 267 48 92 chr1 111106379 111106559 -171087105 - MIR SINE MIR 0 262 91 180 0 0 0 chr1 111106559 111106579 -171087085 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 399 267 48 92 chr1 111106579 111106604 -171087060 - MIR SINE MIR -171 91 66 847 150 54 7 chr1 111107177 111107324 -171086340 - MER5A DNA MER1_type -35 154 1 454 271 8 8 chr1 111107656 111107778 -171085886 + MIR SINE MIR 111 232 -30 957 208 62 16 chr1 111107824 111108132 -171085532 + MER113 DNA MER1_type? 2 323 -198 1813 149 16 45 chr1 111109072 111109380 -171084284 + AluJb SINE Alu 1 299 -13 192 40 0 0 chr1 111110644 111110669 -171082995 + (TC)n Simple_repeat Simple_repeat 2 26 0 186 414 63 9 chr1 111110741 111110852 -171082812 - L2 LINE L2 -40 3232 3116 1454 158 62 76 chr1 111111236 111111540 -171082124 + AluJo SINE Alu 1 300 -12 234 271 96 121 chr1 111111584 111111756 -171081908 - L2 LINE L2 -642 2672 2497 1321 102 76 0 chr1 111111756 111111992 -171081672 + L1MA8 LINE L1 6033 6286 -5 234 271 96 121 chr1 111111992 111112331 -171081333 - L2 LINE L2 -817 2497 2174 1004 247 42 103 chr1 111112928 111113422 -171080242 - LTR16B LTR ERVL 0 464 1 24 53 0 0 chr1 111113634 111113672 -171079992 + AT_rich Low_complexity Low_complexity 1 38 0 2096 126 0 0 chr1 111113681 111113967 -171079697 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr1 111113967 111113992 -171079672 + AT_rich Low_complexity Low_complexity 1 25 0 302 263 11 53 chr1 111116163 111116258 -171077406 + MIR SINE MIR 93 183 -79 197 314 39 29 chr1 111116359 111116461 -171077203 + MIR SINE MIR 86 188 -74 25 65 0 0 chr1 111116551 111116597 -171077067 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr1 111116756 111116778 -171076886 + AT_rich Low_complexity Low_complexity 1 22 0 3660 14 0 0 chr1 111116835 111117254 -171076410 - L1PA3 LINE L1 0 6155 5737 24 32 0 0 chr1 111117368 111117399 -171076265 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 111117586 111117607 -171076057 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 27 chr1 111117706 111117718 -171075946 + AT_rich Low_complexity Low_complexity 1 12 -24 754 114 0 0 chr1 111117718 111117832 -171075832 + L1PB1 LINE L1 6037 6150 -1 26 0 0 27 chr1 111117832 111117856 -171075808 + AT_rich Low_complexity Low_complexity 12 36 0 360 0 0 0 chr1 111120789 111120829 -171072835 + (CA)n Simple_repeat Simple_repeat 1 40 0 2337 102 0 0 chr1 111121899 111122204 -171071460 - AluSx SINE Alu -7 305 1 1389 181 22 84 chr1 111123185 111123505 -171070159 + AluJo SINE Alu 5 304 -8 312 231 64 0 chr1 111123782 111123860 -171069804 - MIR SINE MIR 0 262 180 27 49 0 0 chr1 111123875 111123916 -171069748 + AT_rich Low_complexity Low_complexity 1 41 0 299 282 91 0 chr1 111123923 111124033 -171069631 - MIR SINE MIR -62 200 81 584 222 42 44 chr1 111125514 111125738 -171067926 - MLT1H LTR MaLR -330 219 25 1175 165 53 23 chr1 111127169 111127435 -171066229 + ORSL DNA AcHobo 2 275 0 394 338 73 15 chr1 111128456 111128688 -171064976 - MIR SINE MIR -16 246 3 183 200 127 36 chr1 111128734 111128789 -171064875 + L2 LINE L2 3203 3262 -10 653 281 17 21 chr1 111129223 111129511 -171064153 - HERV16 LTR ERVL -1900 3096 3036 1061 198 37 16 chr1 111129511 111129832 -171063832 - MLT1A1 LTR MaLR 0 365 1 1379 315 26 2 chr1 111129835 111130337 -171063327 - HERV16 LTR ERVL -1959 3037 2524 1527 292 34 18 chr1 111130571 111131581 -171062083 - HERV16 LTR ERVL -2854 2176 1035 1645 112 132 16 chr1 111131844 111132095 -171061569 + AluSx SINE Alu 3 282 -30 246 105 0 0 chr1 111132095 111132133 -171061531 + (TC)n Simple_repeat Simple_repeat 1 38 0 429 167 0 0 chr1 111132133 111132211 -171061453 + (TA)n Simple_repeat Simple_repeat 2 79 0 584 367 92 36 chr1 111132848 111133674 -171059990 + L2 LINE L2 1935 2806 -508 1500 199 25 35 chr1 111133706 111134072 -171059592 + MLT1A2 LTR MaLR 2 363 -11 578 174 58 0 chr1 111134836 111134974 -171058690 - MER97a DNA MER1_type? 0 894 749 30 0 0 0 chr1 111135017 111135047 -171058617 + AT_rich Low_complexity Low_complexity 1 30 0 2729 94 24 14 chr1 111135047 111135461 -171058203 - L1PA13 LINE L1 -5 6158 5741 251 189 19 0 chr1 111135462 111135515 -171058149 - MLT1G LTR MaLR -380 210 157 483 148 59 0 chr1 111135522 111135623 -171058041 - L1P4 LINE L1 -423 5740 5634 38 0 0 0 chr1 111135623 111135661 -171058003 + AT_rich Low_complexity Low_complexity 1 38 0 301 202 36 0 chr1 111135663 111135747 -171057917 - MER97a DNA MER1_type? -172 722 636 521 202 57 16 chr1 111135747 111135871 -171057793 - FRAM SINE Alu -13 163 35 1584 201 41 63 chr1 111135871 111136334 -171057330 - MER97c DNA MER1_type? -444 646 194 1300 261 106 21 chr1 111136334 111136852 -171056812 - MLT1G LTR MaLR 0 590 29 667 216 158 0 chr1 111136904 111137075 -171056589 - MER97c DNA MER1_type? -892 198 1 869 237 51 9 chr1 111137964 111138179 -171055485 - MIR SINE MIR -26 236 13 203 348 33 11 chr1 111138772 111138864 -171054800 + L2 LINE L2 2552 2645 -669 618 198 111 31 chr1 111138936 111139098 -171054566 + MER45A DNA AcHobo 3 177 -1 264 385 34 14 chr1 111139551 111139699 -171053965 + L2 LINE L2 3122 3272 0 2439 59 7 0 chr1 111140684 111140972 -171052692 - AluY SINE Alu -12 299 10 635 257 90 5 chr1 111141056 111141278 -171052386 + MER46C DNA MER2_type 98 338 0 197 375 70 23 chr1 111141301 111141429 -171052235 - MIR SINE MIR -116 146 13 218 264 264 0 chr1 111141740 111141827 -171051837 - L2 LINE L2 -1 3312 3203 339 283 88 62 chr1 111142311 111142583 -171051081 + L2 LINE L2 2686 2964 -350 843 266 84 0 chr1 111142656 111142893 -171050771 + MIR SINE MIR 6 262 0 29 47 0 0 chr1 111142991 111143034 -171050630 + AT_rich Low_complexity Low_complexity 1 43 0 408 356 34 0 chr1 111144974 111145123 -171048541 - MIR SINE MIR -89 173 20 23 33 0 0 chr1 111145348 111145378 -171048286 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 111145464 111145488 -171048176 + AT_rich Low_complexity Low_complexity 1 24 0 1210 196 85 8 chr1 111145580 111145612 -171048052 - Charlie5 DNA MER1_type 0 2624 2596 216 0 0 0 chr1 111145612 111145636 -171048028 + (TA)n Simple_repeat Simple_repeat 2 25 0 1210 196 85 8 chr1 111145636 111145966 -171047698 - Charlie5 DNA MER1_type -28 2596 2234 351 237 31 0 chr1 111145980 111146077 -171047587 - Charlie5 DNA MER1_type -2503 109 10 34 55 0 0 chr1 111146239 111146294 -171047370 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr1 111147328 111147351 -171046313 + AT_rich Low_complexity Low_complexity 1 23 0 629 306 209 35 chr1 111147356 111147687 -171045977 + L3 LINE CR1 567 971 -606 450 0 0 0 chr1 111147687 111147737 -171045927 + (CA)n Simple_repeat Simple_repeat 2 51 0 629 306 209 35 chr1 111147737 111147778 -171045886 + L3 LINE CR1 971 1004 -573 291 285 81 107 chr1 111147801 111148099 -171045565 + L3 LINE CR1 969 1258 -319 244 307 24 71 chr1 111148338 111148465 -171045199 + L2 LINE L2 2955 3075 -197 * 289 196 0 0 chr1 111148434 111148480 -171045184 + L2 LINE L2 3255 3300 -13 180 232 14 72 chr1 111148803 111148872 -171044792 + L3 LINE CR1 1388 1452 -125 443 262 35 21 chr1 111149916 111150061 -171043603 + MIR SINE MIR 116 262 0 2431 78 0 0 chr1 111151173 111151481 -171042183 - AluY SINE Alu -3 308 1 529 244 26 130 chr1 111155018 111155326 -171038338 + L2 LINE L2 3038 3313 0 211 333 83 0 chr1 111155353 111155437 -171038227 + MIR SINE MIR 156 246 -16 669 286 29 15 chr1 111155825 111156031 -171037633 - MIR SINE MIR -52 210 2 388 312 116 68 chr1 111156300 111157000 -171036664 - L2 LINE L2 -47 3266 2440 232 279 49 0 chr1 111157180 111157241 -171036423 - MIR3 SINE MIR -38 170 107 975 258 9 0 chr1 111157506 111157719 -171035945 + MER58A DNA MER1_type 6 220 -4 413 303 63 17 chr1 111158331 111158506 -171035158 + MER5A DNA MER1_type 7 189 0 28 0 0 0 chr1 111158591 111158619 -171035045 + AT_rich Low_complexity Low_complexity 1 28 0 528 65 52 0 chr1 111158619 111158696 -171034968 - L1PA3 LINE L1 -3 6152 6072 1787 148 3 36 chr1 111159589 111159892 -171033772 + AluSx SINE Alu 1 293 -19 288 236 0 0 chr1 111160089 111160144 -171033520 + L2 LINE L2 3251 3305 -8 1231 347 82 31 chr1 111160313 111161263 -171032401 + L3 LINE CR1 467 1512 -65 195 279 33 0 chr1 111161307 111161368 -171032296 - MIR SINE MIR 0 262 200 809 287 97 26 chr1 111161445 111161847 -171031817 + MLT1J LTR MaLR 3 394 -52 280 289 0 62 chr1 111161888 111161985 -171031679 - MIR SINE MIR -107 155 65 1723 144 0 67 chr1 111162115 111162428 -171031236 + AluJo SINE Alu 3 294 -18 3236 175 17 17 chr1 111163217 111163810 -171029854 + MER6A DNA MER2_type 1 593 -12 286 281 235 32 chr1 111164447 111164664 -171029000 + MIR SINE MIR 2 262 0 2571 84 3 0 chr1 111164765 111165110 -171028554 + L1PA6 LINE L1 5801 6146 -8 985 92 12 67 chr1 111165584 111165748 -171027916 + L1MC3 LINE L1 6670 6824 -961 318 50 0 0 chr1 111165758 111165798 -171027866 + (CA)n Simple_repeat Simple_repeat 1 40 0 1051 222 102 63 chr1 111165798 111166307 -171027357 - MER39 LTR ERV1 -2 705 5 713 181 15 54 chr1 111166315 111166519 -171027145 + L1MC3 LINE L1 6870 7065 -720 234 319 0 0 chr1 111166543 111166612 -171027052 + MLT1F1 LTR MaLR 35 103 -464 3197 127 5 69 chr1 111166641 111167294 -171026370 - MER4B LTR ERV1 0 779 1 2725 188 30 14 chr1 111167294 111167868 -171025796 + L1MC3 LINE L1 7203 7785 0 24 0 0 0 chr1 111167874 111167898 -171025766 + AT_rich Low_complexity Low_complexity 1 24 0 2244 68 7 0 chr1 111168086 111168388 -171025276 + AluY SINE Alu 1 304 0 231 200 0 55 chr1 111168907 111168962 -171024702 - MER117 DNA MER1_type -52 145 94 402 218 10 20 chr1 111169174 111169275 -171024389 + LTR43 LTR ERV1 197 296 -306 229 243 254 66 chr1 111170278 111170459 -171023205 + L2 LINE L2 3099 3313 0 347 293 9 17 chr1 111171070 111171186 -171022478 - Charlie8 DNA MER1_type -2195 222 108 28 29 0 0 chr1 111172419 111172454 -171021210 + AT_rich Low_complexity Low_complexity 1 35 0 288 368 8 8 chr1 111172468 111172593 -171021071 + MIR SINE MIR 3 127 -135 291 225 0 0 chr1 111172594 111172665 -171020999 + L1ME1 LINE L1 5170 5240 -906 1378 128 53 4 chr1 111172666 111172893 -171020771 - Tigger5 DNA MER2_type 0 2323 2086 2183 123 39 31 chr1 111172965 111173324 -171020340 + THE1B LTR MaLR 1 362 -2 10819 121 6 3 chr1 111173325 111174887 -171018777 + THE1B-int LTR MaLR 14 1580 0 2121 122 47 36 chr1 111174887 111175247 -171018417 + THE1B LTR MaLR 1 364 0 6680 179 21 7 chr1 111175250 111175746 -171017918 + L1PB4 LINE L1 3891 4378 -1778 234 0 0 0 chr1 111175746 111175772 -171017892 + (CA)n Simple_repeat Simple_repeat 2 27 0 6680 179 21 7 chr1 111175772 111177503 -171016161 + L1PB4 LINE L1 4378 6155 -1 682 208 0 0 chr1 111177544 111177664 -171016000 + FRAM SINE Alu 36 155 -21 2620 260 12 34 chr1 111177664 111178479 -171015185 + L1ME1 LINE L1 5320 6116 -50 413 318 0 7 chr1 111178372 111178520 -171015144 + L1MA10 LINE L1 6169 6315 -19 * 941 54 77 8 chr1 111178521 111178651 -171015013 - MER85 DNA T2_type 0 139 1 25 51 0 0 chr1 111178738 111178777 -171014887 + AT_rich Low_complexity Low_complexity 1 39 0 191 36 36 0 chr1 111179192 111179220 -171014444 + (GA)n Simple_repeat Simple_repeat 2 30 0 268 273 23 47 chr1 111179839 111179967 -171013697 + L1MEc LINE L1 60 184 -6212 310 386 22 48 chr1 111180090 111180362 -171013302 + L1MEc LINE L1 289 553 -5843 4103 31 4 0 chr1 111180374 111180859 -171012805 - L1PA5 LINE L1 0 6154 5668 3411 31 0 0 chr1 111180859 111181411 -171012253 + L1PA5 LINE L1 5113 5664 -491 931 300 44 57 chr1 111181577 111182668 -171010996 + L1MEc LINE L1 573 1819 -4577 2053 228 45 85 chr1 111182699 111183591 -171010073 + L1MEc LINE L1 2163 3003 -3212 3443 268 95 116 chr1 111183591 111183961 -171009703 - L2 LINE L2 -620 2694 2317 2017 117 0 3 chr1 111183961 111184244 -171009420 + AluSq SINE Alu 2 283 -30 3443 268 95 116 chr1 111184244 111184299 -171009365 - L2 LINE L2 -997 2317 2262 234 0 0 0 chr1 111184299 111184325 -171009339 + (CA)n Simple_repeat Simple_repeat 1 26 0 3443 268 95 116 chr1 111184325 111184738 -171008926 - L2 LINE L2 -1052 2262 1842 427 74 0 0 chr1 111184738 111184792 -171008872 + AluSq/x SINE Alu 70 123 -190 3443 268 95 116 chr1 111184792 111186288 -171007376 - L2 LINE L2 -1472 1842 357 238 342 0 0 chr1 111186529 111186605 -171007059 + CT-rich Low_complexity Low_complexity 1 76 0 208 232 72 29 chr1 111187263 111187332 -171006332 + L2 LINE L2 3148 3219 -94 2752 182 42 4 chr1 111187570 111188076 -171005588 - MER44D DNA MER2_type -13 592 13 184 194 0 0 chr1 111188522 111188558 -171005106 - L2 LINE L2 -6 3307 3272 244 375 36 47 chr1 111188659 111188934 -171004730 - L2 LINE L2 -184 3088 2817 25 0 0 0 chr1 111189500 111189525 -171004139 + AT_rich Low_complexity Low_complexity 1 25 0 601 133 148 15 chr1 111189606 111189741 -171003923 + L1MA4 LINE L1 6147 6299 -1 302 190 58 80 chr1 111189758 111189895 -171003769 + L1MA7 LINE L1 6034 6167 -124 * 10812 219 17 19 chr1 111189882 111190856 -171002808 + L1P LINE L1 2351 3326 -2820 263 48 0 24 chr1 111190856 111190898 -171002766 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 10812 219 17 19 chr1 111190898 111191247 -171002417 + L1P LINE L1 3326 3674 -2472 1857 134 14 0 chr1 111191247 111191522 -171002142 + AluSg SINE Alu 1 279 -31 209 33 33 0 chr1 111191526 111191556 -171002108 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 10812 219 17 19 chr1 111191556 111192618 -171001046 + L1P LINE L1 3677 4738 -1408 2484 66 0 3 chr1 111192618 111192922 -171000742 + AluY SINE Alu 1 303 -8 10812 219 17 19 chr1 111192922 111193128 -171000536 + L1P LINE L1 4738 4943 -1203 6442 189 11 10 chr1 111193229 111193961 -170999703 + L1PA15 LINE L1 4018 4748 -1417 2484 66 0 3 chr1 111193961 111194265 -170999399 + AluY SINE Alu 1 303 -8 6442 189 11 10 chr1 111194265 111194971 -170998693 + L1PA15 LINE L1 4748 5445 -720 2035 127 0 0 chr1 111194971 111195276 -170998388 + AluSx SINE Alu 1 305 0 6442 189 11 10 chr1 111195276 111195984 -170997680 + L1PA15 LINE L1 5445 6151 -14 437 205 0 8 chr1 111196001 111196118 -170997546 + L1MA7 LINE L1 6170 6285 -6 2221 214 44 39 chr1 111196293 111196826 -170996838 + MLT1F LTR MaLR 7 549 0 1565 206 130 41 chr1 111196943 111197403 -170996261 + MLT1D LTR MaLR 5 505 0 247 284 134 24 chr1 111197885 111198012 -170995652 - MIR SINE MIR -58 204 64 214 341 33 116 chr1 111198175 111198477 -170995187 - L2 LINE L2 -50 3222 2946 1856 120 84 0 chr1 111198493 111198768 -170994896 + AluSq SINE Alu 1 298 -15 385 244 0 13 chr1 111199660 111199738 -170993926 + L2 LINE L2 3210 3286 -27 282 56 0 0 chr1 111199842 111199878 -170993786 + (CA)n Simple_repeat Simple_repeat 1 36 0 2171 179 38 16 chr1 111199880 111200304 -170993360 + MLT1C LTR MaLR 32 464 -3 561 274 130 13 chr1 111201002 111201232 -170992432 - MLT1J2 LTR MaLR -5 445 189 189 74 0 0 chr1 111201881 111201908 -170991756 + (TTG)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr1 111202329 111202358 -170991306 + AT_rich Low_complexity Low_complexity 1 29 0 1477 182 0 11 chr1 111202417 111202681 -170990983 + AluJo SINE Alu 2 262 -50 444 51 0 0 chr1 111205003 111205062 -170988602 + (TG)n Simple_repeat Simple_repeat 2 60 0 1280 141 0 0 chr1 111205081 111205266 -170988398 - AluSq SINE Alu 0 313 129 727 158 0 0 chr1 111205557 111205671 -170987993 + MER47A DNA MER2_type 25 138 -228 27 62 0 0 chr1 111205832 111205880 -170987784 + AT_rich Low_complexity Low_complexity 1 48 0 618 226 127 23 chr1 111205888 111206109 -170987555 - L1ME2 LINE L1 -7 6157 5914 593 225 35 21 chr1 111206163 111206305 -170987359 + MER106B DNA MER1_type 6 149 -910 887 208 29 25 chr1 111206403 111206648 -170987016 - L1MDb LINE L1 -3446 2960 2715 716 291 50 9 chr1 111206655 111206875 -170986789 + L2 LINE L2 2428 2656 -658 11159 142 38 2 chr1 111206875 111208744 -170984920 + Tigger1 DNA MER2_type 482 2418 0 263 88 0 0 chr1 111209949 111209983 -170983681 - MER3 DNA MER1_type -158 51 18 356 224 17 52 chr1 111209995 111210111 -170983553 - L1ME2 LINE L1 -151 6013 5902 1431 157 5 0 chr1 111210209 111210426 -170983238 + AluSx SINE Alu 4 221 -91 221 164 0 18 chr1 111210441 111210496 -170983168 + GA-rich Low_complexity Low_complexity 2 55 0 193 226 94 0 chr1 111210498 111210551 -170983113 + L3 LINE CR1 1518 1575 -2 1203 236 70 76 chr1 111210742 111211519 -170982145 - L1M4 LINE L1 -1109 5037 4266 1234 288 66 15 chr1 111211649 111212431 -170981233 - L1MDb LINE L1 -4594 1993 1136 676 258 128 110 chr1 111212832 111213277 -170980387 - MLT1F LTR MaLR -89 453 1 2394 167 26 12 chr1 111213325 111213745 -170979919 - MSTB LTR MaLR 0 426 1 7694 189 50 16 chr1 111213745 111215341 -170978323 - MSTB-int LTR MaLR 0 1651 1 2227 193 26 9 chr1 111215341 111215760 -170977904 - MSTB LTR MaLR 0 426 1 1252 173 7 72 chr1 111215964 111216241 -170977423 - AluJo SINE Alu -14 298 40 2383 85 0 0 chr1 111217837 111218142 -170975522 + AluY SINE Alu 4 308 -3 350 319 60 0 chr1 111218988 111219104 -170974560 + MIR SINE MIR 78 200 -62 27 49 0 0 chr1 111219111 111219152 -170974512 + AT_rich Low_complexity Low_complexity 1 41 0 317 231 64 0 chr1 111219167 111219245 -170974419 + MIR SINE MIR 180 262 0 1354 181 22 84 chr1 111219522 111219842 -170973822 - AluJo SINE Alu -8 304 5 2247 102 7 0 chr1 111220824 111221127 -170972537 + AluSx SINE Alu 1 305 -7 1057 96 0 39 chr1 111221127 111221307 -170972357 + AluSc SINE Alu 132 305 0 22 0 0 0 chr1 111222046 111222068 -170971596 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr1 111223980 111224009 -170969655 + AT_rich Low_complexity Low_complexity 1 29 0 400 348 54 62 chr1 111224413 111224859 -170968805 + L2 LINE L2 2601 3040 -232 189 0 0 0 chr1 111225179 111225200 -170968464 + (A)n Simple_repeat Simple_repeat 1 21 0 252 218 210 16 chr1 111225261 111225385 -170968279 + MLT1J2 LTR MaLR 67 214 -236 263 207 0 17 chr1 111225454 111225512 -170968152 + MLT1I LTR MaLR 316 372 -37 281 321 255 16 chr1 111225546 111225789 -170967875 + L3 LINE CR1 1239 1539 -38 413 265 118 15 chr1 111226423 111226559 -170967105 - L2 LINE L2 0 3313 3164 364 381 72 7 chr1 111228019 111228326 -170965338 + LTR16C LTR ERVL 150 476 -15 185 205 26 0 chr1 111228390 111228429 -170965235 - MIR SINE MIR -12 250 211 807 226 39 28 chr1 111228885 111229346 -170964318 + MLT1G1 LTR MaLR 1 567 0 224 77 26 0 chr1 111229545 111229584 -170964080 + (CAAAAA)n Simple_repeat Simple_repeat 4 43 0 293 257 44 35 chr1 111229705 111229818 -170963846 + MLT1G1-int LTR MaLR 430 543 -828 260 279 63 18 chr1 111230689 111230800 -170962864 + MLT1G1-int LTR MaLR 1249 1364 -7 682 281 30 5 chr1 111230807 111231010 -170962654 + MLT1G1 LTR MaLR 1 208 -387 25 31 0 0 chr1 111231973 111232005 -170961659 + AT_rich Low_complexity Low_complexity 1 32 0 219 157 0 96 chr1 111232379 111232462 -170961202 + T-rich Low_complexity Low_complexity 2 76 0 324 305 32 11 chr1 111233164 111233259 -170960405 - L2 LINE L2 -2 3311 3215 4519 182 22 33 chr1 111233473 111234493 -170959171 - L1 LINE L1 -1839 5010 4003 2424 117 42 0 chr1 111234493 111234851 -170958813 + THE1C LTR MaLR 3 375 0 10175 110 40 13 chr1 111234885 111236414 -170957250 + THE1C-int LTR MaLR 10 1579 -1 2300 136 5 8 chr1 111236417 111236786 -170956878 + THE1C LTR MaLR 3 370 -5 3703 219 17 46 chr1 111236790 111238119 -170955545 - L1PA15-16 LINE L1 -2840 4009 2723 439 238 66 0 chr1 111238115 111238237 -170955427 + L1 LINE L1 4324 4453 -1693 * 3144 75 27 16 chr1 111238239 111238682 -170954982 + LTR7 LTR ERV1 1 448 -2 15070 103 35 26 chr1 111238684 111241531 -170952133 + HERVH LTR ERV1 1 2995 -4718 5605 112 12 2 chr1 111241510 111242356 -170951308 + HERVH LTR ERV1 3140 3993 -3720 * 3075 124 2 2 chr1 111242358 111242969 -170950695 + HERVH LTR ERV1 4488 5146 -2567 368 167 0 13 chr1 111243137 111243215 -170950449 + CT-rich Low_complexity Low_complexity 2 78 0 2047 128 28 0 chr1 111244773 111245063 -170948601 + AluSx SINE Alu 1 298 -14 358 339 58 40 chr1 111245297 111245574 -170948090 + HAL1b LINE L1 77 358 -990 303 250 31 10 chr1 111245857 111245953 -170947711 + MLT1I LTR MaLR 273 370 -39 324 172 7 55 chr1 111245959 111246104 -170947560 + (TA)n Simple_repeat Simple_repeat 1 138 0 225 273 73 18 chr1 111246320 111246430 -170947234 + HAL1 LINE L1 1537 1652 -855 24 0 0 0 chr1 111247734 111247758 -170945906 + AT_rich Low_complexity Low_complexity 1 24 0 297 319 241 5 chr1 111248393 111248584 -170945080 + MIR SINE MIR 21 256 -6 21 0 0 0 chr1 111249681 111249702 -170943962 + AT_rich Low_complexity Low_complexity 1 21 0 242 280 124 0 chr1 111250140 111250242 -170943422 - MIR SINE MIR -97 111 34 379 282 42 7 chr1 111250394 111250536 -170943128 - L1ME LINE L1 -386 5735 5589 1808 259 97 0 chr1 111250803 111251362 -170942302 - L1ME1 LINE L1 -5 6161 5549 204 376 169 9 chr1 111251984 111252327 -170941337 - L2 LINE L2 -2200 1114 717 1235 126 0 6 chr1 111252430 111252605 -170941059 + AluSg/x SINE Alu 127 300 -12 327 293 25 45 chr1 111252858 111253015 -170940649 - MER5A DNA MER1_type 0 189 36 722 225 59 6 chr1 111253065 111253234 -170940430 + MER5B DNA MER1_type 1 178 0 438 234 106 20 chr1 111253945 111254211 -170939453 - MER46C DNA MER2_type -2 336 18 21 57 0 0 chr1 111254274 111254309 -170939355 + AT_rich Low_complexity Low_complexity 1 35 0 333 323 16 8 chr1 111254388 111254512 -170939152 - MIR SINE MIR -55 207 83 21 0 0 0 chr1 111255523 111255544 -170938120 + AT_rich Low_complexity Low_complexity 1 21 0 1889 171 91 6 chr1 111256825 111257188 -170936476 - MSTD LTR MaLR -2 394 1 421 232 72 0 chr1 111257188 111257313 -170936351 - MER94 DNA DNA 0 134 1 207 0 0 0 chr1 111258623 111258646 -170935018 + (A)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr1 111259296 111259322 -170934342 + AT_rich Low_complexity Low_complexity 1 26 0 589 256 58 0 chr1 111259325 111259462 -170934202 + L2 LINE L2 3127 3271 -1 21 0 0 0 chr1 111259873 111259894 -170933770 + AT_rich Low_complexity Low_complexity 1 21 0 450 311 53 37 chr1 111260194 111260384 -170933280 - MIR SINE MIR -50 212 20 21 36 0 0 chr1 111260551 111260579 -170933085 + AT_rich Low_complexity Low_complexity 1 28 0 213 324 88 20 chr1 111263103 111263205 -170930459 - L2 LINE L2 -1 3271 3163 992 204 182 80 chr1 111263460 111263861 -170929803 - MLT1H LTR MaLR -107 442 1 208 175 0 25 chr1 111264264 111264304 -170929360 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3470 202 29 26 chr1 111264304 111265096 -170928568 + Tigger6a DNA MER2_type 7 800 -283 1694 180 28 67 chr1 111265096 111265149 -170928515 - MLT1A2 LTR MaLR 0 374 320 1887 164 17 20 chr1 111265149 111265497 -170928167 - MER7A DNA MER2_type 0 346 2 1694 180 28 67 chr1 111265497 111265832 -170927832 - MLT1A2 LTR MaLR -54 320 1 1225 169 62 4 chr1 111265832 111266104 -170927560 + Tigger6a DNA MER2_type 796 1083 0 318 301 4 4 chr1 111266106 111266364 -170927300 + (TA)n Simple_repeat Simple_repeat 1 258 0 2255 100 3 3 chr1 111266642 111266941 -170926723 - AluSx SINE Alu -13 299 1 1622 197 79 14 chr1 111267258 111267624 -170926040 - MLT1B LTR MaLR 0 390 1 249 33 0 0 chr1 111268689 111268719 -170924945 + (TG)n Simple_repeat Simple_repeat 2 31 0 737 255 134 14 chr1 111268792 111269213 -170924451 + L1ME4a LINE L1 5488 5952 -169 1529 176 56 39 chr1 111269587 111269945 -170923719 - THE1B LTR MaLR 0 364 1 1304 130 4 57 chr1 111270074 111270304 -170923360 + MER20 DNA MER1_type 2 219 0 316 269 19 29 chr1 111270379 111270483 -170923181 + MIR SINE MIR 90 192 -70 32103 86 12 9 chr1 111270536 111275050 -170918614 + L1P LINE L1 11 4536 -1610 198 0 0 0 chr1 111275189 111275211 -170918453 + (A)n Simple_repeat Simple_repeat 1 22 0 1364 226 88 42 chr1 111275219 111275868 -170917796 + L1MEc LINE L1 1729 2407 -3989 729 147 0 0 chr1 111275873 111275982 -170917682 + FLAM_C SINE Alu 4 112 -31 25 51 0 0 chr1 111275984 111276023 -170917641 + AT_rich Low_complexity Low_complexity 1 39 0 4318 246 92 10 chr1 111276034 111277625 -170916039 + L1MEc LINE L1 2383 4104 -2111 327 279 143 7 chr1 111278438 111278578 -170915086 - MIR SINE MIR -2 260 102 500 255 149 29 chr1 111278689 111278897 -170914767 - Charlie2 DNA MER1_type -2629 233 1 273 302 42 21 chr1 111280536 111280632 -170913032 + MIR3 SINE MIR 84 181 -27 216 67 0 0 chr1 111280928 111280958 -170912706 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 271 294 167 0 chr1 111281213 111281339 -170912325 - MIR SINE MIR -112 150 4 26 50 0 0 chr1 111281421 111281461 -170912203 + AT_rich Low_complexity Low_complexity 1 40 0 277 322 0 11 chr1 111282350 111282437 -170911227 - MIR3 SINE MIR -15 193 108 324 0 0 0 chr1 111282960 111282996 -170910668 + (TG)n Simple_repeat Simple_repeat 2 37 0 2204 105 0 29 chr1 111283348 111283662 -170910002 + AluSx SINE Alu 1 305 -7 275 179 0 0 chr1 111284032 111284088 -170909576 - MER5C DNA MER1_type 0 324 269 207 200 0 0 chr1 111284242 111284287 -170909377 - MER5C DNA MER1_type -200 124 80 247 206 0 68 chr1 111284446 111284519 -170909145 - MER103 DNA DNA -55 111 44 263 293 9 35 chr1 111285116 111285232 -170908432 + MER103 DNA DNA 3 115 -51 29 47 0 0 chr1 111288303 111288346 -170905318 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1 111288583 111288607 -170905057 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr1 111288843 111288893 -170904771 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr1 111289040 111289068 -170904596 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 111291539 111291564 -170902100 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 561 330 117 20 chr1 111291620 111292201 -170901463 + L2 LINE L2 2597 3267 -5 2151 131 18 12 chr1 111292288 111292623 -170901041 + MER1B DNA MER1_type 1 337 0 2326 87 6 13 chr1 111293933 111294245 -170899419 + AluSq SINE Alu 4 313 0 8165 129 13 16 chr1 111294793 111296192 -170897472 + L1P LINE L1 1879 3273 -2873 1564 202 8 0 chr1 111296305 111296661 -170897003 - SVA Other Other -1027 359 1 807 199 60 5 chr1 111296671 111296872 -170896792 - L1 LINE L1 -1780 4366 4155 * 1719 271 11 9 chr1 111296861 111297385 -170896279 + L1MD1 LINE L1 4322 4846 -1300 1852 194 57 0 chr1 111297395 111297762 -170895902 - MSTD LTR MaLR -8 388 1 4741 210 26 52 chr1 111297768 111299222 -170894442 + L1MD1 LINE L1 4850 6242 0 242 315 127 53 chr1 111299588 111299867 -170893797 - L2 LINE L2 -239 3033 2742 417 153 0 0 chr1 111299920 111299992 -170893672 + CT-rich Low_complexity Low_complexity 1 72 0 198 301 14 0 chr1 111300205 111300278 -170893386 - MIR SINE MIR -13 249 176 23 54 0 0 chr1 111300300 111300337 -170893327 + AT_rich Low_complexity Low_complexity 1 37 0 233 378 0 0 chr1 111301220 111301302 -170892362 + MIR3 SINE MIR 91 172 -36 305 100 20 0 chr1 111301592 111301642 -170892022 + (GAA)n Simple_repeat Simple_repeat 3 53 0 623 216 16 22 chr1 111301958 111302143 -170891521 + L1MC1 LINE L1 6023 6206 -127 752 160 77 0 chr1 111302250 111302406 -170891258 + L1MC2 LINE L1 6177 6344 0 226 284 108 0 chr1 111302496 111302570 -170891094 + L2 LINE L2 3197 3278 -35 218 296 0 42 chr1 111302634 111302705 -170890959 - L2 LINE L2 -44 3228 3161 183 42 0 0 chr1 111302759 111302783 -170890881 + (TG)n Simple_repeat Simple_repeat 1 24 0 225 213 0 0 chr1 111303462 111303509 -170890155 - MIR SINE MIR -104 158 112 25 0 0 0 chr1 111304016 111304041 -170889623 + AT_rich Low_complexity Low_complexity 1 25 0 1094 303 69 23 chr1 111304282 111304715 -170888949 - L2 LINE L2 -33 3280 2828 2220 136 105 5 chr1 111304723 111305112 -170888552 + MSTA LTR MaLR 1 428 0 669 159 0 9 chr1 111305112 111305219 -170888445 + FLAM_C SINE Alu 3 108 -35 974 84 0 7 chr1 111305230 111305373 -170888291 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 210 375 23 23 chr1 111305379 111305507 -170888157 - L2 LINE L2 -449 2865 2738 2122 134 73 15 chr1 111305554 111305896 -170887768 + THE1B LTR MaLR 1 362 -2 10989 112 9 12 chr1 111305896 111307478 -170886186 + THE1B-int LTR MaLR 2 1580 0 1968 139 60 28 chr1 111307478 111307831 -170885833 + THE1B LTR MaLR 1 364 0 185 232 158 0 chr1 111307849 111307931 -170885733 - L2 LINE L2 -689 2625 2531 6216 178 4 16 chr1 111308210 111310257 -170883407 - L1PA13 LINE L1 -3 6160 4130 389 275 16 123 chr1 111310298 111310549 -170883115 - LTR67 LTR ERVL -2 555 332 2049 171 40 3 chr1 111311147 111311521 -170882143 + MLT1B LTR MaLR 1 388 -2 308 306 62 42 chr1 111311575 111311768 -170881896 - MER117 DNA MER1_type 0 197 1 315 115 179 0 chr1 111311893 111311964 -170881700 - L1MC/D LINE L1 -318 5848 5778 1745 154 22 4 chr1 111311992 111312265 -170881399 + AluSx SINE Alu 1 278 -34 239 259 0 0 chr1 111312278 111312336 -170881328 - L1 LINE L1 -1294 4852 4795 311 260 36 6 chr1 111312359 111312498 -170881166 - L1M1 LINE L1 -871 3055 2782 307 309 80 37 chr1 111312522 111312710 -170880954 - L1MDa LINE L1 -4812 1403 1208 1404 249 31 37 chr1 111312724 111313366 -170880298 - L1MDa LINE L1 -5200 1196 559 213 39 0 0 chr1 111313366 111313392 -170880272 + (T)n Simple_repeat Simple_repeat 1 26 0 10343 122 5 27 chr1 111313420 111315117 -170878547 - L1P LINE L1 -3110 3036 1377 3964 68 2 0 chr1 111315123 111315641 -170878023 + L1PA8 LINE L1 5653 6171 -1 555 303 0 0 chr1 111315655 111315797 -170877867 - L1MDa LINE L1 -5861 535 394 210 37 0 0 chr1 111315797 111315824 -170877840 + (TC)n Simple_repeat Simple_repeat 2 28 0 627 286 95 11 chr1 111315838 111316100 -170877564 - L1MDa LINE L1 -6074 322 39 23 33 0 0 chr1 111316142 111316172 -170877492 + AT_rich Low_complexity Low_complexity 1 30 0 2858 62 3 0 chr1 111316173 111316529 -170877135 - L1PA7 LINE L1 -17 6137 5781 2135 65 4 0 chr1 111316531 111316807 -170876857 + L1PA7 LINE L1 5515 5791 -363 28 0 0 0 chr1 111317134 111317162 -170876502 + AT_rich Low_complexity Low_complexity 1 28 0 644 264 60 19 chr1 111318353 111318569 -170875095 - MIR SINE MIR -3 259 35 675 36 0 0 chr1 111319095 111319179 -170874485 - L1PA3 LINE L1 -895 5251 5168 7490 32 0 0 chr1 111319179 111320133 -170873531 + L1PA3 LINE L1 5224 6177 0 22 35 0 0 chr1 111321091 111321120 -170872544 + AT_rich Low_complexity Low_complexity 1 29 0 11291 180 31 33 chr1 111321825 111321937 -170871727 + L1M1 LINE L1 17 128 -7437 2206 116 0 7 chr1 111321937 111322238 -170871426 + AluSx SINE Alu 1 299 -13 11291 180 31 33 chr1 111322238 111324283 -170869381 + L1M1 LINE L1 128 2168 -5397 564 111 0 0 chr1 111324283 111324364 -170869300 + AluY SINE Alu 215 295 -16 426 311 86 39 chr1 111324366 111324646 -170869018 + HAL1 LINE L1 902 1194 -1313 1720 131 189 19 chr1 111324751 111325117 -170868547 + MSTA LTR MaLR 1 428 0 897 306 151 35 chr1 111325127 111325526 -170868138 + HAL1 LINE L1 1208 1559 -948 1593 206 112 42 chr1 111325526 111325998 -170867666 + MLT1D LTR MaLR 1 505 0 897 306 151 35 chr1 111325998 111326216 -170867448 + HAL1 LINE L1 1559 1750 -757 2025 87 55 6 chr1 111326216 111326527 -170867137 + L1PA10 LINE L1 5841 6166 -2 897 306 151 35 chr1 111326527 111326927 -170866737 + HAL1 LINE L1 1750 2344 -163 560 294 43 38 chr1 111327164 111327399 -170866265 + L2 LINE L2 3077 3312 -1 21 0 0 0 chr1 111328863 111328884 -170864780 + AT_rich Low_complexity Low_complexity 1 21 0 330 83 60 30 chr1 111329129 111329262 -170864402 + (TA)n Simple_repeat Simple_repeat 1 137 0 21 0 0 0 chr1 111329285 111329306 -170864358 + AT_rich Low_complexity Low_complexity 1 21 0 298 105 35 49 chr1 111329306 111329449 -170864215 + (TTATA)n Simple_repeat Simple_repeat 1 141 0 265 111 83 0 chr1 111329452 111329524 -170864140 + (TA)n Simple_repeat Simple_repeat 1 78 0 14344 90 6 8 chr1 111329524 111332349 -170861315 - L1PA7 LINE L1 -12 6142 3324 2552 78 22 11 chr1 111333906 111334265 -170859399 - THE1B LTR MaLR 0 364 2 40 49 0 0 chr1 111334737 111334798 -170858866 + AT_rich Low_complexity Low_complexity 1 61 0 21 82 0 0 chr1 111335035 111335084 -170858580 + AT_rich Low_complexity Low_complexity 1 49 0 2343 239 48 4 chr1 111336423 111336959 -170856705 + MLT1F1 LTR MaLR 2 561 -6 193 191 0 32 chr1 111337507 111337570 -170856094 + GA-rich Low_complexity Low_complexity 3 63 0 428 297 80 0 chr1 111337610 111337748 -170855916 + MIR SINE MIR 42 190 -72 2074 177 48 0 chr1 111337932 111338304 -170855360 + MLT1B LTR MaLR 1 390 0 2230 148 60 2 chr1 111339516 111339929 -170853735 + LTR23 LTR ERV1 1 437 0 384 322 137 18 chr1 111340218 111340445 -170853219 - MLT1J LTR MaLR -149 362 109 291 246 142 8 chr1 111340973 111341107 -170852557 - L1ME4a LINE L1 -1 6120 5969 1958 127 74 6 chr1 111341682 111342020 -170851644 - THE1B LTR MaLR 0 364 4 816 147 7 15 chr1 111342109 111342245 -170851419 - AluSc SINE Alu -31 278 144 361 204 18 5 chr1 111342245 111342336 -170851328 - AluJ/monomer SINE Alu -249 53 1 21171 180 11 11 chr1 111342438 111347760 -170845904 - L1PA12 LINE L1 -2 7604 1501 1090 204 4 21 chr1 111347758 111347993 -170845671 - L1PA12 LINE L1 -7350 231 1 * 304 275 76 57 chr1 111348025 111348236 -170845428 - HAL1 LINE L1 -1059 1448 1234 182 36 0 36 chr1 111348236 111348264 -170845400 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 325 328 17 9 chr1 111348283 111348399 -170845265 - L1MEd LINE L1 -4981 1138 1022 291 201 133 0 chr1 111350274 111350354 -170843310 - MIR SINE MIR -68 140 63 1934 108 3 54 chr1 111350620 111350944 -170842720 + AluSg SINE Alu 1 309 0 485 295 51 62 chr1 111352494 111352864 -170840800 + L1MCc LINE L1 24 389 -6034 610 335 8 27 chr1 111353733 111353993 -170839671 + MIR SINE MIR 8 262 0 2645 201 36 85 chr1 111354026 111354754 -170838910 + LTR8A LTR ERV1 34 725 -2 2707 127 19 7 chr1 111354895 111355318 -170838346 + MER34C LTR ERV1 30 457 -128 5338 125 50 55 chr1 111355318 111355453 -170838211 + Tigger3b DNA MER2_type 1 135 -2893 4999 124 22 7 chr1 111355453 111356220 -170837444 + MER4E LTR ERV1 1 779 0 5338 125 50 55 chr1 111356220 111356690 -170836974 + Tigger3b DNA MER2_type 135 606 -2422 2086 138 3 0 chr1 111356690 111356979 -170836685 + AluSq SINE Alu 1 290 -23 5338 125 50 55 chr1 111356979 111357344 -170836320 + Tigger3b DNA MER2_type 606 969 -2059 2059 133 3 3 chr1 111357344 111357652 -170836012 - AluSx SINE Alu -4 308 1 5338 125 50 55 chr1 111357652 111357728 -170835936 + Tigger3b DNA MER2_type 969 1044 -187 2509 41 0 7 chr1 111358875 111359168 -170834496 - AluY SINE Alu -20 291 1 225 0 0 0 chr1 111359594 111359619 -170834045 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr1 111360251 111360280 -170833384 + AT_rich Low_complexity Low_complexity 1 29 0 2077 265 49 35 chr1 111360287 111360329 -170833335 - L1ME3A LINE L1 -52 6118 6078 2140 102 58 22 chr1 111360329 111360691 -170832973 - THE1C LTR MaLR 0 375 1 2077 265 49 35 chr1 111360691 111361421 -170832243 - L1ME3A LINE L1 -92 6078 5335 1302 206 54 54 chr1 111361559 111362005 -170831659 - L1 LINE L1 -3041 3105 2668 354 45 0 0 chr1 111362013 111362057 -170831607 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 2003 120 7 10 chr1 111362059 111362351 -170831313 + AluSg SINE Alu 3 293 -17 527 224 0 8 chr1 111362396 111362521 -170831143 - AluSp/q SINE Alu -12 301 178 2273 150 11 5 chr1 111363442 111363809 -170829855 - Tigger2a DNA MER2_type -40 394 26 377 319 141 25 chr1 111363919 111364239 -170829425 - L1ME3A LINE L1 -1555 4591 4235 3582 81 0 0 chr1 111366120 111366603 -170827061 - L1P LINE L1 -2058 4088 3606 20031 34 5 0 chr1 111366684 111369809 -170823855 - L1PA4 LINE L1 -5 6150 2933 3614 84 10 2 chr1 111369809 111370323 -170823341 - L1P LINE L1 -2524 3622 3105 8812 88 13 14 chr1 111370326 111372352 -170821312 + L1PA7 LINE L1 4125 6154 0 247 343 67 15 chr1 111374415 111374549 -170819115 - MIR3 SINE MIR -67 141 1 190 436 0 0 chr1 111375132 111375233 -170818431 + MIR3 SINE MIR 82 182 -26 429 270 117 0 chr1 111375257 111375368 -170818296 + L2 LINE L2 3189 3312 -1 1313 213 12 4 chr1 111375655 111375908 -170817756 - MLT1A1 LTR MaLR -2 363 109 3319 168 21 80 chr1 111375920 111376645 -170817019 - L1MCa LINE L1 -5740 686 5 21 36 0 0 chr1 111376919 111376947 -170816717 + AT_rich Low_complexity Low_complexity 1 28 0 731 338 57 15 chr1 111378511 111378988 -170814676 + L1MC4a LINE L1 5475 5971 -1837 2661 107 18 60 chr1 111379094 111379541 -170814123 - MSTC LTR MaLR 0 428 1 33 0 0 0 chr1 111379564 111379597 -170814067 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr1 111379745 111379782 -170813882 + AT_rich Low_complexity Low_complexity 1 37 0 565 232 7 133 chr1 111380572 111380865 -170812799 + L2 LINE L2 3058 3313 0 1386 168 42 42 chr1 111380937 111381247 -170812417 - AluJb SINE Alu -2 310 1 5025 41 0 0 chr1 111381820 111382430 -170811234 - L1PA4 LINE L1 -3 6152 5543 253 272 141 0 chr1 111383478 111383570 -170810094 + MIR SINE MIR 156 260 -2 359 349 73 16 chr1 111383658 111383850 -170809814 - MIR SINE MIR -23 239 37 366 245 173 14 chr1 111384032 111384171 -170809493 + L2 LINE L2 3147 3307 -6 1943 79 0 117 chr1 111385736 111386077 -170807587 + AluY SINE Alu 1 301 0 456 319 17 71 chr1 111386348 111386548 -170807116 + MIR SINE MIR 2 195 -63 442 222 20 0 chr1 111386609 111386708 -170806956 + MLT1K LTR MaLR 487 587 -1 2867 281 91 17 chr1 111387503 111388662 -170805002 + L2 LINE L2 1879 3125 -188 2706 129 64 5 chr1 111388898 111389338 -170804326 - MLT1C LTR MaLR -1 466 1 225 326 222 9 chr1 111389372 111389593 -170804071 + L3 LINE CR1 1300 1567 -10 414 237 58 92 chr1 111390558 111390731 -170802933 + L2 LINE L2 3143 3309 -4 1561 136 52 3 chr1 111391101 111391388 -170802276 - L1MA9 LINE L1 0 6312 6012 22 35 0 0 chr1 111391949 111391978 -170801686 + AT_rich Low_complexity Low_complexity 1 29 0 2206 203 96 36 chr1 111392449 111392972 -170800692 + MLT2B3 LTR ERVL 1 554 0 1821 196 98 23 chr1 111392997 111393474 -170800190 + MLT-int LTR MaLR 923 1492 -243 442 194 11 11 chr1 111393482 111393575 -170800089 - L1MC3 LINE L1 -508 7695 7603 239 254 0 0 chr1 111393598 111393661 -170800003 - MLT1F1 LTR MaLR -453 114 52 4846 170 24 93 chr1 111393661 111394882 -170798782 - L1MC3 LINE L1 -671 7532 6397 1140 187 0 10 chr1 111394976 111395185 -170798479 - L1MC3 LINE L1 -2137 6066 5860 * 2153 187 42 38 chr1 111395184 111395761 -170797903 - L1MC3 LINE L1 -4866 1698 1120 230 0 30 0 chr1 111395775 111395808 -170797856 - L1MB1 LINE L1 -46 6122 6089 248 119 24 0 chr1 111395813 111395855 -170797809 - L1MB1 LINE L1 -50 6118 6076 * 2631 212 40 8 chr1 111395854 111396454 -170797210 - L1MC3 LINE L1 -4912 1133 515 329 252 107 29 chr1 111396868 111396971 -170796693 + MER81 DNA DNA 3 113 -1 2135 102 0 7 chr1 111399206 111399528 -170794136 + AluSg SINE Alu 1 320 0 26 50 0 0 chr1 111399811 111399851 -170793813 + AT_rich Low_complexity Low_complexity 1 40 0 620 306 77 5 chr1 111399977 111400186 -170793478 - MIR SINE MIR -11 251 28 640 269 6 12 chr1 111401157 111401317 -170792347 - MIR SINE MIR -102 160 2 1827 320 51 12 chr1 111401384 111402115 -170791549 - HERV16 LTR ERVL -1950 3046 2288 374 306 107 0 chr1 111402490 111402663 -170791001 - MIR SINE MIR 0 262 71 280 241 111 19 chr1 111403461 111403623 -170790041 - L1ME4a LINE L1 -218 5903 5727 7367 117 17 11 chr1 111403631 111404754 -170788910 - L1MA3 LINE L1 0 6305 5164 2439 53 0 31 chr1 111404754 111405075 -170788589 - AluY SINE Alu 0 311 1 7367 117 17 11 chr1 111405075 111406027 -170787637 - L1MA3 LINE L1 -1141 5164 4219 224 378 0 12 chr1 111406070 111406152 -170787512 + MIR SINE MIR 26 106 -156 299 247 47 0 chr1 111406302 111406387 -170787277 + MIR SINE MIR 146 234 -28 208 220 34 0 chr1 111406392 111406451 -170787213 + (TTA)n Simple_repeat Simple_repeat 2 62 0 263 197 0 49 chr1 111406619 111406680 -170786984 - L2 LINE L2 -19 3294 3237 2011 221 36 62 chr1 111407392 111408004 -170785660 - L1ME1 LINE L1 -44 6122 5527 293 318 0 0 chr1 111408617 111408702 -170784962 + L2 LINE L2 3184 3268 -4 4653 62 42 0 chr1 111409901 111410700 -170782964 + L1PA7 LINE L1 5071 5895 -259 1452 159 0 0 chr1 111410700 111410920 -170782744 + AluJb SINE Alu 27 246 -66 228 174 0 0 chr1 111411067 111411165 -170782499 + Alu SINE Alu 257 354 0 2176 108 0 22 chr1 111411669 111411983 -170781681 + AluSx SINE Alu 6 312 0 327 289 48 0 chr1 111412588 111412692 -170780972 + MIR SINE MIR 129 237 -25 693 240 115 10 chr1 111413190 111413382 -170780282 + MIR SINE MIR 51 262 0 23 33 0 0 chr1 111413780 111413810 -170779854 + AT_rich Low_complexity Low_complexity 1 30 0 2316 95 0 0 chr1 111414139 111414445 -170779219 + AluSg SINE Alu 1 306 -4 27 0 0 0 chr1 111414726 111414753 -170778911 + AT_rich Low_complexity Low_complexity 1 27 0 529 206 68 8 chr1 111414790 111414948 -170778716 - L1ME3A LINE L1 -2 6160 5985 915 197 271 27 chr1 111414948 111415384 -170778280 + MLT1E2 LTR MaLR 1 553 -73 1384 211 33 60 chr1 111415399 111415763 -170777901 + MLT1H-int LTR MaLR 298 651 -720 616 300 26 0 chr1 111415869 111416059 -170777605 + MLT1H-int LTR MaLR 696 890 -481 422 288 36 68 chr1 111416110 111416332 -170777332 + MLT1H-int LTR MaLR 875 1089 -282 * 1580 233 42 17 chr1 111416303 111416823 -170776841 - L1MEd LINE L1 -1322 4807 4275 483 245 17 80 chr1 111417002 111417239 -170776425 - L1MEd LINE L1 -2146 3983 3762 * 558 283 90 6 chr1 111417228 111417574 -170776090 - L1MEd LINE L1 -2727 3402 3028 1170 142 0 6 chr1 111417578 111417754 -170775910 - AluSg/x SINE Alu -18 294 120 396 238 91 0 chr1 111417774 111417917 -170775747 - L1MEd LINE L1 -3136 2993 2838 276 285 54 69 chr1 111418075 111418205 -170775459 - L2 LINE L2 0 3272 3145 229 252 27 81 chr1 111418978 111419089 -170774575 - L2 LINE L2 -50 3263 3159 685 265 61 42 chr1 111419379 111419636 -170774028 - L1MEd LINE L1 -3314 2815 2546 2265 121 0 0 chr1 111419636 111419941 -170773723 - AluSx SINE Alu -7 305 1 685 265 61 42 chr1 111419941 111420090 -170773574 - L1MEd LINE L1 -3583 2546 2401 306 0 0 0 chr1 111420241 111420275 -170773389 + (CA)n Simple_repeat Simple_repeat 2 35 0 2390 82 0 0 chr1 111420344 111420638 -170773026 - AluY SINE Alu -17 294 1 352 290 45 34 chr1 111420825 111421094 -170772570 - L1MEd LINE L1 -4934 1185 914 243 256 154 0 chr1 111421826 111421904 -170771760 + MLT1K LTR MaLR 495 584 -4 320 299 36 15 chr1 111422059 111422196 -170771468 + MIR SINE MIR 68 207 -55 787 246 60 24 chr1 111422433 111422681 -170770983 + LTR16C LTR ERVL 235 491 0 1591 251 82 45 chr1 111425374 111425865 -170767799 + MLT1H LTR MaLR 41 549 0 685 244 0 77 chr1 111426051 111426272 -170767392 - MLT1A1 LTR MaLR 0 365 162 321 135 0 0 chr1 111426272 111426324 -170767340 + (GA)n Simple_repeat Simple_repeat 2 53 0 592 247 65 54 chr1 111426324 111426510 -170767154 - MLT1A1 LTR MaLR -186 188 1 875 320 45 24 chr1 111427223 111427604 -170766060 - L2 LINE L2 -2 3311 2923 217 305 47 62 chr1 111427889 111428017 -170765647 - L2 LINE L2 -2 3311 3186 269 352 104 8 chr1 111428027 111428152 -170765512 + MIR SINE MIR 11 147 -115 * 356 148 9 183 chr1 111428150 111428265 -170765399 - L2 LINE L2 0 3313 3219 386 253 86 110 chr1 111428747 111429130 -170764534 + MLT1J LTR MaLR 156 605 -10 238 294 33 72 chr1 111430451 111430604 -170763060 + MIR SINE MIR 56 202 -60 480 350 48 5 chr1 111430792 111430998 -170762666 + MIR SINE MIR 48 262 0 952 170 5 53 chr1 111431197 111431403 -170762261 - AluSx SINE Alu -114 198 3 25 0 0 0 chr1 111431405 111431430 -170762234 + AT_rich Low_complexity Low_complexity 1 25 0 2938 99 2 0 chr1 111431430 111431843 -170761821 - L1PA10 LINE L1 -4 6164 5751 507 246 166 0 chr1 111431843 111432030 -170761634 - L1M4 LINE L1 -3506 2640 2423 305 288 253 6 chr1 111432205 111432375 -170761289 - HAL1 LINE L1 -2030 477 266 22 0 0 0 chr1 111432612 111432634 -170761030 + AT_rich Low_complexity Low_complexity 1 22 0 277 311 44 0 chr1 111434107 111434197 -170759467 + MIR SINE MIR 98 191 -71 28 61 0 0 chr1 111434652 111434701 -170758963 + AT_rich Low_complexity Low_complexity 1 49 0 326 300 39 54 chr1 111435073 111435203 -170758461 - MIR SINE MIR -64 144 17 416 272 168 12 chr1 111435614 111435864 -170757800 + LTR40c LTR ERVL 148 436 -29 207 0 0 0 chr1 111436083 111436106 -170757558 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1575 191 32 0 chr1 111437489 111437771 -170755893 - AluJo SINE Alu -19 293 3 457 298 21 7 chr1 111437914 111438055 -170755609 + L2 LINE L2 1773 1915 -1399 476 275 128 50 chr1 111438058 111438513 -170755151 - HAL1 LINE L1 -333 2174 1685 5483 156 28 32 chr1 111438610 111439565 -170754099 - L1MA7 LINE L1 -1 6290 5330 2028 115 26 26 chr1 111439565 111439877 -170753787 - AluSx SINE Alu 0 312 1 5483 156 28 32 chr1 111439877 111440419 -170753245 - L1MA7 LINE L1 -961 5330 4787 2736 139 45 21 chr1 111440415 111440975 -170752689 + L1MA7 LINE L1 4225 4797 -1349 * 629 279 133 51 chr1 111441022 111441466 -170752198 - HAL1 LINE L1 -823 1684 1278 393 22 0 0 chr1 111441466 111441512 -170752152 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 629 279 133 51 chr1 111441512 111441907 -170751757 - HAL1 LINE L1 -1229 1278 776 479 324 106 67 chr1 111442027 111442657 -170751007 - HAL1 LINE L1 -1837 670 16 261 0 0 0 chr1 111446046 111446075 -170747589 + (CA)n Simple_repeat Simple_repeat 1 29 0 798 278 163 37 chr1 111446515 111446969 -170746695 - L2 LINE L2 -561 2753 2243 523 217 91 14 chr1 111447002 111447145 -170746519 - MIR SINE MIR -2 260 107 180 135 0 0 chr1 111447353 111447390 -170746274 + (T)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr1 111447697 111447718 -170745946 + AT_rich Low_complexity Low_complexity 1 21 0 426 253 98 61 chr1 111448114 111448261 -170745403 + MLT1J LTR MaLR 1 162 -349 453 134 0 24 chr1 111448261 111448343 -170745321 + MADE1 DNA Mariner 1 80 0 426 253 98 61 chr1 111448343 111448440 -170745224 + MLT1J LTR MaLR 162 254 -257 2941 191 7 38 chr1 111448545 111449238 -170744426 - L1MD2 LINE L1 -429 5930 5259 2206 116 7 0 chr1 111449344 111449654 -170744010 - AluSx SINE Alu 0 312 1 192 286 61 0 chr1 111450798 111450847 -170742817 - MIR SINE MIR -114 148 97 1407 231 158 37 chr1 111450862 111451478 -170742186 + HsTC2a DNA Tc2 1 686 -56 27 73 0 0 chr1 111451752 111451807 -170741857 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr1 111453343 111453366 -170740298 + AT_rich Low_complexity Low_complexity 1 23 0 1919 172 29 15 chr1 111456724 111457067 -170736597 - MER7A DNA MER2_type 0 346 1 207 323 75 11 chr1 111457072 111457165 -170736499 - MIR SINE MIR -74 188 90 316 389 49 66 chr1 111457959 111458227 -170735437 + L2 LINE L2 2914 3177 -95 3590 38 0 0 chr1 111458227 111458673 -170734991 + L1PA3 LINE L1 5714 6159 0 316 389 49 66 chr1 111458673 111458768 -170734896 + L2 LINE L2 3177 3272 0 264 236 43 107 chr1 111458980 111459120 -170734544 + MIR SINE MIR 120 250 -12 219 174 0 43 chr1 111459085 111459131 -170734533 + L2 LINE L2 3261 3304 -9 * 207 213 21 0 chr1 111459858 111459905 -170733759 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr1 111460675 111460703 -170732961 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr1 111464235 111464279 -170729385 + AT_rich Low_complexity Low_complexity 1 44 0 826 155 22 115 chr1 111464784 111465010 -170728654 + MER3 DNA MER1_type 5 209 0 274 326 47 93 chr1 111465190 111465405 -170728259 + L2 LINE L2 3029 3233 -39 2198 117 0 0 chr1 111466466 111466766 -170726898 - AluSx SINE Alu -12 300 1 30 0 0 0 chr1 111469205 111469235 -170724429 + AT_rich Low_complexity Low_complexity 1 30 0 8387 154 12 6 chr1 111469252 111471513 -170722151 - L1PA12 LINE L1 -7 6161 3861 21 0 0 0 chr1 111471808 111471829 -170721835 + AT_rich Low_complexity Low_complexity 1 21 0 209 122 0 24 chr1 111472221 111472262 -170721402 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 815 191 0 0 chr1 111472266 111472439 -170721225 - L1MA4 LINE L1 -5 6295 6123 217 128 51 0 chr1 111472500 111472539 -170721125 + (TATG)n Simple_repeat Simple_repeat 1 41 0 5504 82 1 8 chr1 111473525 111474270 -170719394 + L1PA8A LINE L1 5392 6131 0 344 335 100 45 chr1 111474306 111474776 -170718888 + L2 LINE L2 2743 3237 -76 662 201 34 22 chr1 111474902 111475081 -170718583 + MER53 DNA DNA 1 181 -8 180 290 170 30 chr1 111475158 111475258 -170718406 - L2 LINE L2 -37 3235 3122 341 221 188 113 chr1 111475830 111476043 -170717621 - MIR SINE MIR -5 257 29 21 82 0 0 chr1 111476484 111476533 -170717131 + AT_rich Low_complexity Low_complexity 1 49 0 838 87 52 0 chr1 111476601 111476716 -170716948 + AluSg SINE Alu 3 123 -187 2220 97 0 7 chr1 111477201 111477511 -170716153 - AluY SINE Alu -3 308 1 625 279 35 86 chr1 111478025 111478663 -170715001 - L2 LINE L2 0 3313 2619 541 275 0 8 chr1 111478667 111478787 -170714877 - L2 LINE L2 -8 3305 3187 490 353 147 5 chr1 111478792 111479160 -170714504 - L2 LINE L2 -689 2625 2206 357 310 41 14 chr1 111479878 111480023 -170713641 + MIR3 SINE MIR 3 151 -57 451 303 85 13 chr1 111480777 111481007 -170712657 - MIR SINE MIR -9 253 14 646 281 4 100 chr1 111482732 111483002 -170710662 - MIR SINE MIR -10 252 9 8182 131 19 2 chr1 111483308 111484587 -170709077 + HSMAR2 DNA Mariner 2 1302 0 22 35 0 0 chr1 111485722 111485751 -170707913 + AT_rich Low_complexity Low_complexity 1 29 0 300 289 13 0 chr1 111486896 111486972 -170706692 - MIR SINE MIR -61 147 71 242 287 90 16 chr1 111488242 111488364 -170705300 + MIR SINE MIR 76 206 -56 341 208 52 13 chr1 111488784 111488861 -170704803 + MIR SINE MIR 20 99 -109 405 0 0 0 chr1 111489235 111489280 -170704384 + (CA)n Simple_repeat Simple_repeat 1 45 0 366 275 122 26 chr1 111489779 111489968 -170703696 + MIR SINE MIR 1 207 -55 180 152 0 0 chr1 111490006 111490039 -170703625 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1917 143 0 4 chr1 111490854 111491133 -170702531 + AluJb SINE Alu 1 278 -34 432 0 0 0 chr1 111491134 111491182 -170702482 + (CA)n Simple_repeat Simple_repeat 1 48 0 4008 66 4 0 chr1 111491736 111492252 -170701412 + L1PA7 LINE L1 5636 6153 -1 570 332 27 9 chr1 111493102 111493325 -170700339 + MIR SINE MIR 36 262 0 358 298 44 0 chr1 111493697 111493811 -170699853 - MIR SINE MIR -124 138 20 1138 257 189 14 chr1 111497659 111498172 -170695492 + L2 LINE L2 830 1432 -1882 815 261 115 63 chr1 111498197 111498908 -170694756 + L2 LINE L2 2570 3313 0 185 286 41 0 chr1 111498940 111498989 -170694675 + L2 LINE L2 3212 3262 -10 341 404 16 5 chr1 111499739 111499932 -170693732 + MIR SINE MIR 20 214 -48 322 325 60 53 chr1 111499967 111500118 -170693546 - L2 LINE L2 0 3272 3121 476 306 57 22 chr1 111500153 111500382 -170693282 - MIR SINE MIR -24 238 2 3196 68 31 5 chr1 111500484 111500938 -170692726 + L1PA7 LINE L1 5702 6166 0 241 374 40 10 chr1 111501665 111501764 -170691900 + MIR3 SINE MIR 53 154 -54 2325 107 0 0 chr1 111502342 111502641 -170691023 - AluSx SINE Alu -13 299 1 32 43 0 0 chr1 111502651 111502697 -170690967 + AT_rich Low_complexity Low_complexity 1 46 0 238 367 104 24 chr1 111504590 111504966 -170688698 + L2 LINE L2 2550 2955 -359 241 330 0 44 chr1 111505143 111505234 -170688430 + L2 LINE L2 3186 3272 0 2797 3 0 0 chr1 111505789 111506091 -170687573 - AluYa5 SINE Alu -9 302 1 2069 131 7 0 chr1 111506446 111506743 -170686921 + AluSx SINE Alu 1 299 -13 1626 201 23 3 chr1 111506900 111507204 -170686460 - AluJo SINE Alu -2 310 1 338 318 47 64 chr1 111507533 111507829 -170685835 + MLT1K LTR MaLR 143 433 -155 444 145 66 0 chr1 111508831 111508907 -170684757 + LOR1a LTR ERV1 1 81 -416 50 68 0 8 chr1 111508909 111508922 -170684742 + AT_rich Low_complexity Low_complexity 1 13 -103 4612 109 9 6 chr1 111508922 111509618 -170684046 - L1PA14 LINE L1 -3 6158 5461 50 68 0 8 chr1 111509618 111509721 -170683943 + AT_rich Low_complexity Low_complexity 13 116 0 280 105 0 0 chr1 111509721 111509759 -170683905 - L1PA14 LINE L1 -689 5472 5435 256 152 43 0 chr1 111509759 111509805 -170683859 + LOR1a LTR ERV1 64 111 -386 402 39 0 0 chr1 111509805 111509857 -170683807 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1654 184 0 3 chr1 111509886 111510174 -170683490 + LOR1a LTR ERV1 109 395 -102 976 215 45 5 chr1 111510478 111510678 -170682986 + MER58A DNA MER1_type 1 208 -16 24 0 0 0 chr1 111511007 111511031 -170682633 + AT_rich Low_complexity Low_complexity 1 24 0 201 226 0 0 chr1 111511477 111511530 -170682134 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 227 164 55 14 chr1 111512085 111512158 -170681506 + (TA)n Simple_repeat Simple_repeat 2 77 0 302 295 63 37 chr1 111512315 111512586 -170681078 + L1M4 LINE L1 4383 4660 -1486 782 271 92 45 chr1 111512620 111513089 -170680575 - Charlie2b DNA MER1_type -972 1810 1320 336 305 71 7 chr1 111513098 111513239 -170680425 - Charlie2b DNA MER1_type -2618 244 95 252 363 62 39 chr1 111513658 111513837 -170679827 + L2 LINE L2 2589 2771 -543 28 0 0 0 chr1 111513975 111514003 -170679661 + AT_rich Low_complexity Low_complexity 1 28 0 1357 77 6 0 chr1 111514521 111514689 -170678975 - AluSp SINE Alu -116 197 29 990 291 85 46 chr1 111514738 111515050 -170678614 - L1ME LINE L1 -413 5749 5450 2416 84 3 0 chr1 111515050 111515347 -170678317 - AluSp SINE Alu -13 300 3 990 291 85 46 chr1 111515347 111516474 -170677190 - L1ME LINE L1 -712 5450 4243 298 87 0 0 chr1 111516530 111516576 -170677088 - AluSp/q SINE Alu -2 301 256 24 0 0 0 chr1 111517194 111517218 -170676446 + AT_rich Low_complexity Low_complexity 1 24 0 435 266 70 42 chr1 111517232 111517446 -170676218 - MLT1J LTR MaLR -6 505 286 280 351 9 9 chr1 111517691 111517802 -170675862 - L3 LINE CR1 -11 1566 1456 21 36 0 0 chr1 111517887 111517915 -170675749 + AT_rich Low_complexity Low_complexity 1 28 0 614 226 58 32 chr1 111518493 111518683 -170674981 - L2 LINE L2 0 3313 3119 5008 100 22 30 chr1 111518685 111519464 -170674200 + L1PB2 LINE L1 5376 6148 -3 251 162 0 0 chr1 111519479 111519516 -170674148 - MLT1A1 LTR MaLR -92 273 237 622 191 0 0 chr1 111519524 111519634 -170674030 + MLT1A1 LTR MaLR 256 365 0 265 178 0 0 chr1 111520760 111520805 -170672859 - L1ME LINE L1 -446 5675 5631 1538 239 29 29 chr1 111521218 111521599 -170672065 - L1M4b LINE L1 -6468 391 11 183 42 0 0 chr1 111521675 111521699 -170671965 + (TTA)n Simple_repeat Simple_repeat 1 24 0 290 321 141 23 chr1 111521870 111522087 -170671577 - MIR SINE MIR -5 257 17 23 54 0 0 chr1 111522139 111522176 -170671488 + AT_rich Low_complexity Low_complexity 1 37 0 391 315 210 13 chr1 111523537 111523775 -170669889 - L3 LINE CR1 -120 1457 1173 308 269 112 30 chr1 111523937 111524071 -170669593 + MIR SINE MIR 62 206 -56 333 309 83 29 chr1 111524116 111524320 -170669344 - L3 LINE CR1 -624 953 739 194 276 132 0 chr1 111524386 111524462 -170669202 - L2 LINE L2 -1 3312 3227 471 241 22 15 chr1 111524501 111524638 -170669026 - MIR SINE MIR -6 256 119 366 332 143 24 chr1 111524920 111525248 -170668416 - L3 LINE CR1 -939 638 272 216 0 0 0 chr1 111525387 111525411 -170668253 + (A)n Simple_repeat Simple_repeat 1 24 0 464 313 14 7 chr1 111525598 111525745 -170667919 + MIR3 SINE MIR 36 183 -25 303 332 81 40 chr1 111527993 111528216 -170665448 - L1ME4a LINE L1 -57 6064 5833 1735 186 61 6 chr1 111528697 111529041 -170664623 + MLT1A1 LTR MaLR 3 365 0 213 273 30 15 chr1 111529359 111529425 -170664239 + L2 LINE L2 3244 3310 -3 189 301 82 14 chr1 111530070 111530143 -170663521 + L2 LINE L2 3212 3289 -24 198 0 0 0 chr1 111530693 111530715 -170662949 + (CAACT)n Simple_repeat Simple_repeat 5 26 0 23 0 0 0 chr1 111532181 111532204 -170661460 + AT_rich Low_complexity Low_complexity 1 23 0 635 372 18 7 chr1 111532437 111532714 -170660950 + L3 LINE CR1 1297 1576 -1 255 286 11 51 chr1 111532888 111533066 -170660598 + CT-rich Low_complexity Low_complexity 4 174 0 205 184 13 13 chr1 111534060 111534136 -170659528 + (TG)n Simple_repeat Simple_repeat 2 77 0 300 127 0 0 chr1 111534439 111534494 -170659170 + (TG)n Simple_repeat Simple_repeat 2 56 0 1971 196 123 116 chr1 111535760 111535946 -170657718 + LTR1B LTR ERV1 1 184 -642 216 0 0 0 chr1 111535946 111535970 -170657694 + (CA)n Simple_repeat Simple_repeat 1 24 0 1971 196 123 116 chr1 111535970 111536603 -170657061 + LTR1B LTR ERV1 184 826 0 235 232 37 37 chr1 111537308 111537390 -170656274 + MIR SINE MIR 131 212 -50 668 114 0 3 chr1 111537727 111537955 -170655709 + AluSq SINE Alu 1 301 -12 30 27 0 0 chr1 111538815 111538852 -170654812 + AT_rich Low_complexity Low_complexity 1 37 0 4177 180 22 29 chr1 111539452 111539503 -170654161 - L1 LINE L1 -1629 4517 4467 899 179 11 0 chr1 111539503 111539687 -170653977 - L1MA4 LINE L1 -6 6294 6109 4177 180 22 29 chr1 111539687 111540573 -170653091 - L1 LINE L1 -1679 4467 3586 4658 195 30 2 chr1 111540573 111542119 -170651545 + L1MB1 LINE L1 4562 6146 -22 3647 163 21 18 chr1 111542573 111543279 -170650385 - MER67C LTR ERV1 0 710 3 278 262 61 85 chr1 111544718 111544882 -170648782 + L2 LINE L2 3153 3312 -1 22 35 0 0 chr1 111545155 111545184 -170648480 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr1 111545311 111545347 -170648317 + AT_rich Low_complexity Low_complexity 1 36 0 238 282 146 41 chr1 111545823 111546007 -170647657 - MIR SINE MIR -20 242 34 423 310 172 9 chr1 111546026 111546374 -170647290 + L3b LINE CR1 1136 1540 -43 973 142 25 3 chr1 111546557 111546731 -170646933 + MER67D LTR ERV1 1 183 -357 1180 108 39 15 chr1 111546771 111546974 -170646690 + L1MA6 LINE L1 6093 6300 0 6864 4 0 0 chr1 111546979 111547742 -170645922 + L1HS LINE L1 5390 6152 -3 1389 214 22 37 chr1 111547754 111548149 -170645515 + MER67C LTR ERV1 154 507 -7 1331 191 112 16 chr1 111549397 111549701 -170643963 + MLT1F LTR MaLR 210 542 0 320 0 25 0 chr1 111549711 111549751 -170643913 + (TG)n Simple_repeat Simple_repeat 2 42 0 314 329 116 56 chr1 111549952 111550430 -170643234 + L2 LINE L2 2654 3214 -58 1384 210 108 18 chr1 111551020 111551363 -170642301 - MLT1A2 LTR MaLR 0 374 1 262 336 67 0 chr1 111551437 111551571 -170642093 + MIR SINE MIR 59 201 -61 6656 139 33 30 chr1 111551618 111552416 -170641248 + Tigger3b DNA MER2_type 2 807 -2221 2301 92 10 3 chr1 111552416 111552721 -170640943 + AluSc SINE Alu 1 307 -2 6656 139 33 30 chr1 111552721 111553132 -170640532 + Tigger3b DNA MER2_type 807 1215 -16 2252 97 3 3 chr1 111553134 111553443 -170640221 - AluSx SINE Alu -3 309 1 364 230 0 0 chr1 111553604 111553678 -170639986 - MIR SINE MIR -47 215 142 395 163 151 23 chr1 111553678 111553764 -170639900 + MSTD LTR MaLR 1 97 -331 2184 171 20 13 chr1 111553764 111554327 -170639337 - L1PA16 LINE L1 -684 5482 4917 * 2965 138 79 5 chr1 111554324 111554904 -170638760 + L1PA16 LINE L1 5493 6150 -16 560 200 132 38 chr1 111554926 111555150 -170638514 + MSTD LTR MaLR 88 390 -6 323 265 254 15 chr1 111555316 111555592 -170638072 - MLT1K LTR MaLR -13 575 189 1767 247 60 21 chr1 111555923 111556586 -170637078 - L1M4 LINE L1 -999 5147 4459 365 184 10 19 chr1 111556602 111556705 -170636959 + L1MC3 LINE L1 7575 7676 -109 388 262 94 26 chr1 111557019 111557173 -170636491 + MIR SINE MIR 31 192 -66 247 283 0 0 chr1 111557389 111557449 -170636215 - L2 LINE L2 -24 3289 3230 1397 185 42 28 chr1 111557483 111557770 -170635894 - AluJb SINE Alu -20 292 2 1055 249 8 8 chr1 111557952 111558197 -170635467 + MER74A LTR ERVL 232 476 -82 2130 171 31 28 chr1 111558214 111558636 -170635028 - MER74A LTR ERVL -135 423 1 595 316 160 3 chr1 111558648 111558942 -170634722 - LTR16B LTR ERVL -123 341 2 280 381 2 2 chr1 111558947 111559073 -170634591 - MIR SINE MIR -62 146 26 219 36 0 0 chr1 111559578 111559606 -170634058 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1122 227 63 112 chr1 111559936 111560061 -170633603 + MLT1F1 LTR MaLR 1 131 -436 6775 66 8 5 chr1 111560061 111561249 -170632415 + L1PA6 LINE L1 4964 6154 0 1122 227 63 112 chr1 111561249 111561727 -170631937 + MLT1F1 LTR MaLR 131 567 0 415 330 85 10 chr1 111562383 111562583 -170631081 + MIR SINE MIR 34 248 -14 21 0 0 0 chr1 111563076 111563097 -170630567 + AT_rich Low_complexity Low_complexity 1 21 0 266 286 11 55 chr1 111563365 111563456 -170630208 + L2 LINE L2 3146 3232 -40 299 298 48 0 chr1 111563889 111563973 -170629691 + L2 LINE L2 3216 3303 -10 6715 126 58 24 chr1 111564056 111564590 -170629074 - Tigger3b DNA MER2_type -1797 1231 716 2286 86 3 0 chr1 111564590 111564880 -170628784 - AluSc SINE Alu -18 291 1 6715 126 58 24 chr1 111564880 111565536 -170628128 - Tigger3b DNA MER2_type -2312 716 1 1354 138 16 77 chr1 111566261 111566572 -170627092 - L1 LINE L1 -1749 4397 4106 275 295 133 19 chr1 111567320 111567425 -170626239 - L2 LINE L2 -5 3267 3151 271 158 53 35 chr1 111567532 111567589 -170626075 - L2 LINE L2 -6 3307 3250 628 310 128 0 chr1 111567674 111567900 -170625764 + MIR SINE MIR 3 257 -5 180 77 0 0 chr1 111568270 111568296 -170625368 + (CA)n Simple_repeat Simple_repeat 1 26 0 2960 106 2 14 chr1 111568296 111568741 -170624923 - L1PA14 LINE L1 -3 6158 5719 716 226 16 26 chr1 111568915 111569105 -170624559 + MER53 DNA DNA 1 188 -1 474 18 0 0 chr1 111569403 111569458 -170624206 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 2065 116 7 0 chr1 111569458 111569743 -170623921 - AluSg SINE Alu 0 310 24 198 354 57 23 chr1 111570698 111570873 -170622791 + L2 LINE L2 1877 2057 -1257 570 281 75 20 chr1 111570914 111571113 -170622551 - MLT1C LTR MaLR 0 467 258 796 142 0 7 chr1 111571116 111571257 -170622407 + MLT2C1 LTR ERVL 4 143 -254 286 271 12 0 chr1 111571469 111571554 -170622110 + L1ME3 LINE L1 4440 4525 -1621 2569 258 65 27 chr1 111571575 111572954 -170620710 + L1ME3 LINE L1 4590 6161 -1 5556 56 6 0 chr1 111573139 111573833 -170619831 - L1PA7 LINE L1 -3 6151 5454 281 75 0 0 chr1 111574138 111574178 -170619486 + L1MA2 LINE L1 6265 6304 0 1502 282 26 12 chr1 111575073 111575495 -170618169 - LTR16A LTR ERVL -5 445 18 297 373 8 8 chr1 111575722 111575848 -170617816 - MER5A DNA MER1_type -5 184 59 2383 102 13 0 chr1 111576747 111577062 -170616602 + THE1B LTR MaLR 1 319 -45 1950 128 7 7 chr1 111577084 111577365 -170616299 + AluSq SINE Alu 1 281 -32 183 42 0 0 chr1 111577366 111577390 -170616274 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2801 237 65 13 chr1 111577396 111578215 -170615449 + L1MD2 LINE L1 5272 6132 -227 2162 91 9 67 chr1 111578557 111578922 -170614742 + AluSx SINE Alu 1 346 0 239 344 43 31 chr1 111578922 111579085 -170614579 - MLT1K LTR MaLR -290 298 134 231 315 27 0 chr1 111579181 111579254 -170614410 + MIR SINE MIR 92 166 -96 23 33 0 0 chr1 111579656 111579686 -170613978 + AT_rich Low_complexity Low_complexity 1 30 0 220 209 58 147 chr1 111579694 111579885 -170613779 - L3b LINE CR1 -287 1296 1123 24 0 0 0 chr1 111580880 111580904 -170612760 + AT_rich Low_complexity Low_complexity 1 24 0 342 265 97 50 chr1 111581029 111581485 -170612179 - L1M4 LINE L1 -2884 3262 2786 192 319 92 35 chr1 111581765 111581906 -170611758 + L2 LINE L2 3165 3313 0 370 302 51 51 chr1 111581928 111582143 -170611521 + L2 LINE L2 2853 3067 -205 220 357 162 13 chr1 111582464 111582618 -170611046 + MIR SINE MIR 10 186 -76 276 309 108 7 chr1 111582902 111583041 -170610623 + MIR SINE MIR 9 161 -101 * 723 219 125 54 chr1 111583030 111583254 -170610410 - MIR SINE MIR 0 262 23 27 29 0 0 chr1 111583379 111583413 -170610251 + AT_rich Low_complexity Low_complexity 1 34 0 214 288 99 27 chr1 111584580 111584691 -170608973 - MIR SINE MIR -107 155 37 296 234 138 0 chr1 111585246 111585340 -170608324 + MIR SINE MIR 99 205 -57 333 47 0 0 chr1 111585390 111585433 -170608231 + (TG)n Simple_repeat Simple_repeat 2 44 0 1103 140 12 6 chr1 111585435 111585606 -170608058 - AluJo SINE Alu -29 283 112 26 30 0 0 chr1 111585614 111585647 -170608017 + AT_rich Low_complexity Low_complexity 1 33 0 235 158 18 18 chr1 111586503 111586560 -170607104 + GA-rich Low_complexity Low_complexity 4 60 0 407 237 110 98 chr1 111586667 111586746 -170606918 - MIR SINE MIR -16 246 169 2198 93 4 0 chr1 111586746 111587055 -170606609 - AluSp SINE Alu 0 315 6 407 237 110 98 chr1 111587055 111587147 -170606517 - MIR SINE MIR -93 169 72 1053 173 7 0 chr1 111588631 111588878 -170604786 + L1PA12 LINE L1 5851 6142 -19 350 259 175 37 chr1 111589424 111589613 -170604051 - MIR SINE MIR -47 215 1 678 292 86 18 chr1 111589709 111590092 -170603572 - MLT1I LTR MaLR 0 409 1 202 256 0 26 chr1 111590914 111590992 -170602672 + A-rich Low_complexity Low_complexity 5 80 0 2133 109 3 3 chr1 111591680 111591974 -170601690 + AluSx SINE Alu 3 296 -16 672 318 113 62 chr1 111592098 111592976 -170600688 + L1M4 LINE L1 4033 4955 -1191 190 256 89 11 chr1 111593020 111593110 -170600554 + L2 LINE L2 2545 2641 -673 387 327 147 0 chr1 111593568 111593724 -170599940 + MER5A DNA MER1_type 11 189 0 23 33 0 0 chr1 111594080 111594110 -170599554 + AT_rich Low_complexity Low_complexity 1 30 0 492 250 119 45 chr1 111594966 111595210 -170598454 - L2 LINE L2 -1 3312 3051 680 245 145 41 chr1 111595382 111595781 -170597883 + L2 LINE L2 2698 3119 -194 804 163 149 0 chr1 111595866 111596007 -170597657 + MSTA LTR MaLR 1 162 -266 2459 96 8 11 chr1 111596008 111596363 -170597301 - THE1A LTR MaLR -1 354 1 9638 108 7 1 chr1 111596364 111597693 -170595971 - THE1A-int LTR MaLR -1 1579 244 1357 144 104 16 chr1 111597720 111597970 -170595694 + MSTA LTR MaLR 157 428 0 443 405 34 5 chr1 111597985 111598256 -170595408 - L2 LINE L2 -312 3001 2724 197 322 26 43 chr1 111598294 111598409 -170595255 - L2 LINE L2 -889 2425 2313 16170 131 18 103 chr1 111598490 111601980 -170591684 + L1PA7 LINE L1 12 3204 -2942 685 44 0 0 chr1 111601980 111602070 -170591594 - AluSg/x SINE Alu -2 307 218 15681 88 10 1 chr1 111602070 111605018 -170588646 + L1PA7 LINE L1 3195 6154 0 191 338 70 21 chr1 111605038 111605180 -170588484 - L2 LINE L2 -16 3297 3149 322 321 133 48 chr1 111605337 111606078 -170587586 - L2 LINE L2 -64 3249 2444 25 0 0 0 chr1 111606254 111606279 -170587385 + AT_rich Low_complexity Low_complexity 1 25 0 447 75 45 0 chr1 111606539 111606606 -170587058 - L1PA11 LINE L1 -1 6173 6104 1165 166 33 0 chr1 111607146 111607357 -170586307 - L1MB5 LINE L1 0 6174 5957 1154 192 25 0 chr1 111607641 111607844 -170585820 + AluJo SINE Alu 3 210 -102 414 0 0 0 chr1 111607871 111607917 -170585747 + (CATA)n Simple_repeat Simple_repeat 1 46 0 532 27 27 0 chr1 111608337 111608411 -170585253 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 2227 134 112 25 chr1 111609235 111609629 -170584035 + MSTA LTR MaLR 1 428 0 186 371 86 9 chr1 111610089 111610205 -170583459 + MIR SINE MIR 16 140 -68 1088 323 57 24 chr1 111610242 111610849 -170582815 - L2 LINE L2 -97 3216 2591 21 0 0 0 chr1 111613410 111613431 -170580233 + AT_rich Low_complexity Low_complexity 1 21 0 3192 168 293 110 chr1 111613864 111614932 -170578732 - MER52C LTR ERV1 0 1278 1 23 0 0 0 chr1 111616202 111616225 -170577439 + AT_rich Low_complexity Low_complexity 1 23 0 1159 179 50 54 chr1 111616237 111616477 -170577187 - AluJo SINE Alu -68 244 6 839 220 121 11 chr1 111618516 111618822 -170574842 + MER93b LTR ERV1 1 373 0 401 322 102 0 chr1 111618823 111618941 -170574723 + L2 LINE L2 3139 3268 -4 21 71 0 0 chr1 111619080 111619122 -170574542 + AT_rich Low_complexity Low_complexity 1 42 0 1003 128 6 6 chr1 111619161 111619325 -170574339 + Tigger3(Golem) DNA MER2_type 2617 2780 -249 671 128 0 0 chr1 111619329 111619438 -170574226 - AluSg/x SINE Alu -1 309 201 497 125 0 0 chr1 111619596 111619668 -170573996 + AluY SINE Alu 108 179 -132 2050 86 0 4 chr1 111619668 111619936 -170573728 - AluSg SINE Alu -43 267 1 4123 19 2 3 chr1 111620551 111621191 -170572473 - L1P2 LINE L1 -609 5546 4907 * 13934 38 0 1 chr1 111621190 111622904 -170570760 + L1P LINE L1 892 2603 -3543 221 167 0 0 chr1 111623124 111623166 -170570498 + T-rich Low_complexity Low_complexity 4 45 0 1607 177 11 25 chr1 111623166 111623443 -170570221 - AluJo SINE Alu -39 273 1 700 275 30 5 chr1 111623870 111624070 -170569594 + MIR SINE MIR 2 206 -56 21 57 0 0 chr1 111624370 111624405 -170569259 + AT_rich Low_complexity Low_complexity 1 35 0 1429 177 42 12 chr1 111624405 111624739 -170568925 - Cheshire DNA MER1_type -15 2405 2062 435 291 40 14 chr1 111626225 111626373 -170567291 - MIR SINE MIR -71 191 40 442 224 282 12 chr1 111626511 111626681 -170566983 - MIR SINE MIR 0 262 47 404 294 118 55 chr1 111626755 111627292 -170566372 + L2 LINE L2 2660 3233 -80 1351 300 54 13 chr1 111627296 111627754 -170565910 - LTR16C LTR ERVL -2 461 1 2161 126 13 0 chr1 111628913 111629215 -170564449 + AluSx SINE Alu 1 306 -6 4362 148 39 5 chr1 111629453 111630248 -170563416 - L1MA6 LINE L1 -10 6290 5469 1745 143 49 18 chr1 111630935 111631264 -170562400 - MER44D DNA MER2_type 0 609 1 307 252 114 46 chr1 111631264 111631384 -170562280 - MIR SINE MIR -66 196 65 267 181 83 56 chr1 111634378 111634450 -170559214 - L2 LINE L2 -1 3271 3198 * 1987 290 129 24 chr1 111634446 111635378 -170558286 - L2 LINE L2 -588 2726 1697 199 350 130 16 chr1 111635379 111635502 -170558162 - L2 LINE L2 -2768 546 410 1437 199 20 13 chr1 111635574 111635875 -170557789 - MER88 LTR ERVL -83 381 79 606 308 88 30 chr1 111635914 111636219 -170557445 - L2 LINE L2 -2890 424 102 477 145 0 0 chr1 111636841 111636924 -170556740 - L1MA3 LINE L1 0 6305 6223 24 0 0 0 chr1 111637864 111637888 -170555776 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 111637993 111638021 -170555643 + AT_rich Low_complexity Low_complexity 1 28 0 671 281 131 21 chr1 111638859 111639471 -170554193 + L1M4 LINE L1 2400 3078 -3068 1232 178 16 40 chr1 111639473 111639720 -170553944 + MSTD LTR MaLR 1 241 -155 1058 219 10 0 chr1 111639727 111639928 -170553736 + MSTD LTR MaLR 194 396 0 238 127 0 36 chr1 111640053 111640108 -170553556 + (GA)n Simple_repeat Simple_repeat 2 54 0 225 258 15 0 chr1 111640365 111640431 -170553233 + (TTG)n Simple_repeat Simple_repeat 2 68 0 249 339 0 0 chr1 111640557 111640622 -170553042 + LTR67 LTR ERVL 99 163 -394 955 105 0 184 chr1 111640706 111640945 -170552719 + MLT2D LTR ERVL 1 195 -219 629 167 94 58 chr1 111641404 111641542 -170552122 + MLT2C1 LTR ERVL 193 335 -62 962 8 31 0 chr1 111641542 111641669 -170551995 + (TAGA)n Simple_repeat Simple_repeat 4 134 0 465 19 0 0 chr1 111641786 111641840 -170551824 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 297 358 125 0 chr1 111642224 111642400 -170551264 + L2 LINE L2 2686 2883 -431 448 306 95 30 chr1 111643090 111643322 -170550342 + MIR SINE MIR 12 258 -4 1606 129 137 0 chr1 111643796 111644059 -170549605 - AluSx SINE Alu -3 299 1 407 337 63 0 chr1 111644790 111644965 -170548699 - MIR SINE MIR -14 248 63 2500 27 40 0 chr1 111644965 111645263 -170548401 + AluY SINE Alu 1 310 -1 284 48 24 0 chr1 111645445 111645487 -170548177 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2052 111 0 11 chr1 111645488 111645768 -170547896 - AluY SINE Alu -32 279 3 963 324 115 24 chr1 111645954 111646852 -170546812 - L2 LINE L2 -21 3251 2275 1682 111 4 0 chr1 111646897 111647141 -170546523 + L1PA7 LINE L1 5907 6151 -3 2206 67 11 0 chr1 111647796 111648080 -170545584 - AluY SINE Alu -1 310 24 4612 13 0 0 chr1 111648248 111648773 -170544891 + L1PA2 LINE L1 5630 6154 -1 24 67 0 0 chr1 111649261 111649306 -170544358 + AT_rich Low_complexity Low_complexity 1 45 0 3945 56 0 0 chr1 111649361 111649846 -170543818 - L1PA7 LINE L1 -1 6153 5669 1480 171 61 39 chr1 111649961 111650324 -170543340 + MER93b LTR ERV1 3 373 0 193 304 59 10 chr1 111650422 111650524 -170543140 - L2 LINE L2 -575 2739 2633 257 333 67 8 chr1 111651127 111651247 -170542417 + L2 LINE L2 3137 3263 -9 22 0 0 0 chr1 111651361 111651383 -170542281 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 111651621 111651657 -170542007 + AT_rich Low_complexity Low_complexity 1 36 0 2523 134 7 35 chr1 111651846 111652278 -170541386 + L1M2 LINE L1 3 422 -6427 5122 118 32 16 chr1 111652278 111653109 -170540555 + L1MA4A LINE L1 5448 6292 -11 321 304 28 50 chr1 111653160 111653186 -170540478 - L1ME LINE L1 -345 5817 5792 251 54 27 0 chr1 111653186 111653223 -170540441 + (CATA)n Simple_repeat Simple_repeat 2 39 0 321 304 28 50 chr1 111653223 111653377 -170540287 - L1ME LINE L1 -370 5792 5641 34 84 0 0 chr1 111653714 111653797 -170539867 + AT_rich Low_complexity Low_complexity 1 83 0 6315 129 26 89 chr1 111654058 111655302 -170538362 + Tigger1 DNA MER2_type 1 1165 -1253 7955 9 0 0 chr1 111655307 111656290 -170537374 - L1HS LINE L1 0 6155 5173 * 11723 20 9 0 chr1 111656289 111657661 -170536003 + L1HS LINE L1 3790 5174 -972 7689 132 16 24 chr1 111657661 111658941 -170534723 + Tigger1 DNA MER2_type 1150 2418 0 3471 75 0 0 chr1 111659777 111660215 -170533449 + MLT2A1 LTR ERVL 1 438 -6 2008 161 50 65 chr1 111660429 111660894 -170532770 + MER31B LTR ERV1 1 458 -8 734 297 138 27 chr1 111661593 111662184 -170531480 + L2 LINE L2 2425 3078 -194 262 305 147 16 chr1 111663614 111663804 -170529860 + L3 LINE CR1 649 863 -714 329 223 209 29 chr1 111663977 111664116 -170529548 - MIR SINE MIR -10 252 89 188 75 0 50 chr1 111665330 111665370 -170528294 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 571 240 93 39 chr1 111665416 111665674 -170527990 - HAL1 LINE L1 -192 2315 2044 476 223 16 125 chr1 111665704 111665888 -170527776 - L2 LINE L2 -42 3271 3108 410 272 0 40 chr1 111665909 111666034 -170527630 + L1MC4 LINE L1 6669 6788 -1254 1442 205 128 3 chr1 111666224 111666575 -170527089 + L1MC4 LINE L1 6788 7182 -860 43949 40 2 1 chr1 111666593 111672741 -170520923 - L1PA3 LINE L1 -3 6152 1 2352 227 43 52 chr1 111672739 111673489 -170520175 + L1MC4 LINE L1 7169 7911 -131 * 303 233 22 22 chr1 111674720 111674810 -170518854 - L1MC4 LINE L1 -1339 6703 6614 221 250 11 33 chr1 111674812 111674904 -170518760 + (TA)n Simple_repeat Simple_repeat 1 90 0 901 168 19 0 chr1 111674910 111675071 -170518593 + MER2 DNA MER2_type 40 203 -142 627 173 87 8 chr1 111675137 111675264 -170518400 + MER2 DNA MER2_type 208 344 -1 432 37 0 0 chr1 111675280 111675334 -170518330 + (TG)n Simple_repeat Simple_repeat 2 55 0 707 239 54 0 chr1 111676521 111676688 -170516976 + MER45A DNA AcHobo 1 176 -2 649 58 0 0 chr1 111677204 111677290 -170516374 - L1PA5 LINE L1 -5 6149 6064 9711 115 3 1 chr1 111677329 111679539 -170514125 - L1PA8A LINE L1 -2 6129 3923 2945 197 18 11 chr1 111681892 111682450 -170511214 + MER68 LTR ERV1 1 562 0 271 358 88 34 chr1 111682556 111683088 -170510576 - L2 LINE L2 -874 2440 1803 27 29 0 0 chr1 111683898 111683932 -170509732 + AT_rich Low_complexity Low_complexity 1 34 0 255 61 0 0 chr1 111684124 111684157 -170509507 + (CA)n Simple_repeat Simple_repeat 2 34 0 1001 179 15 0 chr1 111684326 111684521 -170509143 + L1P5 LINE L1 1 198 -6665 * 14557 194 33 11 chr1 111684515 111690008 -170503656 + L1P5 LINE L1 625 6383 -484 444 37 0 0 chr1 111791384 111791438 -170402226 + (TG)n Simple_repeat Simple_repeat 2 55 0 915 174 52 59 chr1 111791443 111791713 -170401951 - ORSL DNA AcHobo -7 268 1 348 272 32 13 chr1 111791760 111791918 -170401746 + (CAGAGA)n Simple_repeat Simple_repeat 4 164 0 441 286 29 82 chr1 111793595 111793801 -170399863 + MIR SINE MIR 8 202 -60 885 272 28 79 chr1 111793960 111794467 -170399197 + L1ME3A LINE L1 5374 5854 -316 341 340 105 0 chr1 111794606 111794768 -170398896 + L1ME3A LINE L1 5974 6152 -18 25 0 0 0 chr1 111796774 111796799 -170396865 + AT_rich Low_complexity Low_complexity 1 25 0 196 114 68 0 chr1 111798776 111798820 -170394844 + (CATG)n Simple_repeat Simple_repeat 2 48 0 207 0 0 0 chr1 111798939 111798962 -170394702 + (CA)n Simple_repeat Simple_repeat 2 24 0 329 281 104 91 chr1 111799107 111799492 -170394172 + MLT1K LTR MaLR 199 588 0 219 167 167 50 chr1 111800286 111800346 -170393318 - L2 LINE L2 -14 3299 3233 1186 133 11 0 chr1 111800815 111800995 -170392669 - AluSg/x SINE Alu -9 303 122 275 289 23 55 chr1 111801024 111801152 -170392512 + MER46C DNA MER2_type 215 338 0 227 274 151 0 chr1 111801539 111801612 -170392052 - L2 LINE L2 -18 3254 3171 344 257 136 29 chr1 111801703 111801843 -170391821 + L1ME4a LINE L1 5961 6115 -6 1903 142 10 3 chr1 111801843 111802131 -170391533 - AluSg SINE Alu -18 292 3 2873 171 66 2 chr1 111802260 111802869 -170390795 + L1MC3 LINE L1 7132 7779 -6 635 14 0 0 chr1 111802918 111802991 -170390673 - L1PA5 LINE L1 -8 6146 6074 523 32 0 0 chr1 111802991 111803054 -170390610 + L1PA5 LINE L1 5903 5965 -189 417 171 0 0 chr1 111803076 111803146 -170390518 - L2 LINE L2 -862 2452 2383 221 98 24 0 chr1 111803703 111803744 -170389920 + (TTA)n Simple_repeat Simple_repeat 2 43 0 336 235 61 31 chr1 111804001 111804099 -170389565 - MLT1H LTR MaLR -16 533 433 337 273 128 47 chr1 111805057 111805196 -170388468 - L1M4 LINE L1 -2203 3943 3817 1686 185 84 33 chr1 111805196 111805237 -170388427 - MLT2D LTR ERVL 0 414 377 459 92 0 0 chr1 111805237 111805302 -170388362 + (TG)n Simple_repeat Simple_repeat 2 66 0 1686 185 84 33 chr1 111805302 111805582 -170388082 - MLT2D LTR ERVL -37 377 67 2031 140 0 0 chr1 111805582 111805868 -170387796 - AluSx SINE Alu -26 286 1 1686 185 84 33 chr1 111805868 111805939 -170387725 - MLT2D LTR ERVL -347 67 1 337 273 128 47 chr1 111805939 111805971 -170387693 - L1M4 LINE L1 -2329 3817 3758 382 315 68 6 chr1 111805974 111806136 -170387528 - MIR SINE MIR -76 186 15 21 0 0 0 chr1 111806909 111806930 -170386734 + AT_rich Low_complexity Low_complexity 1 21 0 2085 139 20 0 chr1 111807754 111808081 -170385583 - AluSx SINE Alu 0 312 1 2198 101 7 17 chr1 111808136 111808432 -170385232 - AluSg SINE Alu -17 293 1 553 209 9 152 chr1 111808531 111808741 -170384923 - MIR SINE MIR -5 257 78 22 70 0 0 chr1 111811085 111811128 -170382536 + AT_rich Low_complexity Low_complexity 1 43 0 597 318 102 4 chr1 111811241 111811477 -170382187 + L3 LINE CR1 1318 1576 -1 694 293 91 9 chr1 111811771 111812003 -170381661 - MIR SINE MIR -10 252 2 567 294 0 0 chr1 111812724 111812850 -170380814 - MER5A DNA MER1_type -1 188 63 3710 172 48 4 chr1 111812921 111813409 -170380255 - MER6 DNA MER2_type -129 736 206 291 28 0 0 chr1 111813409 111813445 -170380219 + (CA)n Simple_repeat Simple_repeat 2 37 0 3710 172 48 4 chr1 111813445 111813661 -170380003 - MER6 DNA MER2_type -659 206 1 234 283 0 0 chr1 111813716 111813769 -170379895 + L2 LINE L2 3220 3272 0 395 335 2 20 chr1 111814508 111814700 -170378964 - MIR SINE MIR -62 146 5 244 276 112 0 chr1 111815553 111815651 -170378013 + MER5A DNA MER1_type 4 112 -77 706 212 35 71 chr1 111816521 111816747 -170376917 + MER20 DNA MER1_type 1 218 -1 1576 228 140 5 chr1 111817103 111817547 -170376117 + MLT1D LTR MaLR 2 505 0 990 296 111 18 chr1 111817635 111818031 -170375633 - L2 LINE L2 -1 3312 2880 206 244 0 0 chr1 111818032 111818073 -170375591 + MIR SINE MIR 145 185 -77 4607 160 45 15 chr1 111819027 111819584 -170374080 - L1PA16 LINE L1 -10 6156 5617 957 18 0 0 chr1 111819584 111819695 -170373969 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 6900 56 34 5 chr1 111819697 111820639 -170373025 - L1PA7 LINE L1 -13 6141 5194 4607 160 45 15 chr1 111820639 111821178 -170372486 - L1PA16 LINE L1 -549 5617 5024 295 320 122 48 chr1 111821895 111822207 -170371457 - L2 LINE L2 0 3313 2979 620 263 18 44 chr1 111822356 111822584 -170371080 + L2 LINE L2 3075 3296 -17 183 123 0 70 chr1 111823366 111823423 -170370241 + (GAGAA)n Simple_repeat Simple_repeat 4 56 0 846 281 58 40 chr1 111823615 111824175 -170369489 + L2 LINE L2 2692 3258 -55 363 352 25 6 chr1 111824176 111824338 -170369326 - MIR SINE MIR -91 171 7 639 271 29 45 chr1 111824603 111824847 -170368817 + MIR SINE MIR 9 248 -14 23 33 0 0 chr1 111824850 111824880 -170368784 + AT_rich Low_complexity Low_complexity 1 30 0 411 274 30 45 chr1 111824952 111825153 -170368511 + LTR37B LTR ERV1 1 198 -270 600 223 54 40 chr1 111825222 111825317 -170368347 + LTR37B LTR ERV1 207 299 -169 180 111 0 0 chr1 111825317 111825344 -170368320 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 600 223 54 40 chr1 111825344 111825472 -170368192 + LTR37B LTR ERV1 299 433 -35 796 247 109 29 chr1 111825668 111825907 -170367757 + MIR SINE MIR 4 261 -1 216 146 83 21 chr1 111826761 111826809 -170366855 - L2 LINE L2 0 3313 3263 219 303 0 0 chr1 111826847 111826913 -170366751 + MIR SINE MIR 182 247 -15 253 230 105 79 chr1 111826946 111827098 -170366566 - HAL1 LINE L1 -6 2501 2346 353 226 24 33 chr1 111827632 111827762 -170365902 - HAL1b LINE L1 -184 2323 799 721 183 0 29 chr1 111828166 111828303 -170365361 - FLAM_A SINE Alu 0 133 1 292 297 82 34 chr1 111829056 111829436 -170364228 - L1M4 LINE L1 -2387 3759 3362 21 36 0 0 chr1 111829616 111829644 -170364020 + AT_rich Low_complexity Low_complexity 1 28 0 495 261 31 0 chr1 111829660 111829790 -170363874 - MER94 DNA DNA 0 134 1 707 176 11 59 chr1 111829914 111830101 -170363563 + MER106A DNA MER1_type 54 231 -5 208 200 22 0 chr1 111830376 111830421 -170363243 + MIR SINE MIR 180 225 -37 1402 304 132 24 chr1 111830422 111831413 -170362251 + L2 LINE L2 2034 3133 -180 228 143 0 0 chr1 111832103 111832145 -170361519 + (CTG)n Simple_repeat Simple_repeat 2 43 0 221 283 33 128 chr1 111832259 111832439 -170361225 + L2 LINE L2 3083 3245 -27 299 215 127 0 chr1 111833273 111833352 -170360312 - L1ME4a LINE L1 -69 6052 5964 310 256 58 112 chr1 111834328 111834551 -170359113 - L2 LINE L2 -4 3309 3099 2070 120 0 20 chr1 111835203 111835503 -170358161 + AluSq SINE Alu 1 294 -19 2116 93 3 3 chr1 111835729 111836019 -170357645 - AluY SINE Alu -21 290 1 1535 262 42 5 chr1 111836969 111837516 -170356148 + L1ME3A LINE L1 5319 5890 -280 249 33 0 0 chr1 111837992 111838022 -170355642 + (A)n Simple_repeat Simple_repeat 1 30 0 311 290 126 100 chr1 111838342 111838842 -170354822 + L1ME LINE L1 152 664 -5541 248 128 43 0 chr1 111839128 111839175 -170354489 + L1ME LINE L1 687 735 -4962 328 356 27 0 chr1 111839254 111839400 -170354264 + L1ME LINE L1 1027 1176 -5029 180 172 0 0 chr1 111839414 111839443 -170354221 + MER5A DNA MER1_type 3 31 -158 862 286 37 65 chr1 111839601 111840076 -170353588 + L1ME LINE L1 1228 1715 -4681 180 77 0 0 chr1 111840076 111840102 -170353562 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1514 193 18 28 chr1 111840112 111840397 -170353267 - AluJo SINE Alu -30 282 1 862 286 37 65 chr1 111840397 111840507 -170353157 + L1ME LINE L1 1724 1807 -4589 1577 302 43 8 chr1 111840793 111841569 -170352095 + L1ME LINE L1 2156 2914 -3301 751 241 150 41 chr1 111841564 111841904 -170351760 + L1ME3 LINE L1 5602 5978 -184 * 821 248 122 4 chr1 111842405 111842635 -170351029 + MIR SINE MIR 3 259 -3 180 200 0 0 chr1 111843171 111843216 -170350448 + (AATTG)n Simple_repeat Simple_repeat 3 47 0 467 272 139 13 chr1 111843277 111843435 -170350229 + MIR SINE MIR 72 249 -13 254 301 33 48 chr1 111843564 111843708 -170349956 - MIR SINE MIR -74 188 49 550 208 35 28 chr1 111844247 111844391 -170349273 + L2 LINE L2 3169 3313 0 30 59 0 0 chr1 111844658 111844709 -170348955 + AT_rich Low_complexity Low_complexity 1 51 0 429 20 0 0 chr1 111845436 111845486 -170348178 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 232 107 0 71 chr1 111845487 111845543 -170348121 + (TTCCC)n Simple_repeat Simple_repeat 5 56 0 1142 165 33 24 chr1 111845908 111846120 -170347544 - MER20 DNA MER1_type -4 215 2 215 368 44 22 chr1 111848050 111848186 -170345478 - MIR3 SINE MIR -69 139 1 1076 186 45 21 chr1 111849059 111849236 -170344428 + LTR54B LTR ERV1 9 180 -318 4346 126 44 4 chr1 111849236 111849492 -170344172 + L1MA4A LINE L1 5522 5766 -537 330 67 0 0 chr1 111849492 111849537 -170344127 + (CA)n Simple_repeat Simple_repeat 2 46 0 4346 126 44 4 chr1 111849537 111850026 -170343638 + L1MA4A LINE L1 5766 6297 -6 1076 186 45 21 chr1 111850026 111850096 -170343568 + LTR54B LTR ERV1 180 247 -251 1947 162 0 0 chr1 111850096 111850398 -170343266 + AluJb SINE Alu 1 302 -10 1076 186 45 21 chr1 111850398 111850591 -170343073 + LTR54B LTR ERV1 247 494 -4 24 32 0 0 chr1 111851069 111851100 -170342564 + AT_rich Low_complexity Low_complexity 1 31 0 2168 108 7 16 chr1 111851283 111851589 -170342075 - AluSq SINE Alu -10 303 1 228 35 0 0 chr1 111851698 111851727 -170341937 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 292 289 58 48 chr1 111851791 111851999 -170341665 - L1M4 LINE L1 -1871 4275 4066 341 258 45 23 chr1 111852112 111852244 -170341420 + MER103 DNA DNA 31 165 -1 1287 267 87 48 chr1 111852776 111853611 -170340053 - L1M4 LINE L1 -1440 4706 3839 721 139 8 16 chr1 111853660 111853782 -170339882 + Charlie1 DNA MER1_type 1781 1901 -860 2231 109 0 26 chr1 111853860 111854172 -170339492 + AluSq SINE Alu 2 305 -8 563 278 124 53 chr1 111854302 111854924 -170338740 - L1MEd LINE L1 -4862 1257 592 514 238 35 23 chr1 111856751 111856923 -170336741 - MER5B DNA MER1_type -1 177 4 311 44 22 0 chr1 111858845 111858890 -170334774 + (TG)n Simple_repeat Simple_repeat 1 46 0 225 108 0 0 chr1 111859018 111859055 -170334609 + (TC)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 111859324 111859347 -170334317 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 111859897 111859925 -170333739 + AT_rich Low_complexity Low_complexity 1 28 0 194 352 47 31 chr1 111860101 111860229 -170333435 + MIR SINE MIR 116 245 -17 195 189 0 0 chr1 111860537 111860574 -170333090 + L2 LINE L2 3261 3297 -16 192 167 0 83 chr1 111860574 111860585 -170333079 + MIR SINE MIR 216 259 -3 316 327 105 33 chr1 111862538 111862691 -170330973 + L2 LINE L2 3095 3258 -14 225 94 0 0 chr1 111862700 111862732 -170330932 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 184 225 0 0 chr1 111863010 111863050 -170330614 - L2 LINE L2 -330 2983 2944 4084 83 8 22 chr1 111863245 111863847 -170329817 - L1PA7 LINE L1 -771 5375 4782 5787 83 0 1 chr1 111863852 111864624 -170329040 + L1PA7 LINE L1 5371 6141 -13 222 118 0 0 chr1 111865012 111865046 -170328618 + (T)n Simple_repeat Simple_repeat 1 34 0 436 277 36 22 chr1 111865520 111865657 -170328007 - MIR SINE MIR -113 149 11 506 238 40 8 chr1 111866922 111867048 -170326616 + MIR SINE MIR 3 132 -130 313 328 26 16 chr1 111867803 111867995 -170325669 - L1MC4a LINE L1 -1884 5924 5731 264 234 327 0 chr1 111868069 111868165 -170325499 - MIR SINE MIR -68 140 42 506 213 155 35 chr1 111870366 111870540 -170323124 - L3 LINE CR1 -195 1382 1188 213 325 113 33 chr1 111870543 111870817 -170322847 - L3 LINE CR1 -600 977 682 319 289 107 57 chr1 111870941 111871098 -170322566 - MIR3 SINE MIR -28 180 20 22 0 0 0 chr1 111871863 111871885 -170321779 + AT_rich Low_complexity Low_complexity 1 22 0 246 128 26 0 chr1 111873019 111873058 -170320606 - MIR SINE MIR 0 262 223 1987 166 123 27 chr1 111873070 111873558 -170320106 - MER34 LTR ERV1 0 542 8 371 389 40 0 chr1 111874160 111874286 -170319378 - L2 LINE L2 -8 3264 3134 21 0 0 0 chr1 111874290 111874311 -170319353 + AT_rich Low_complexity Low_complexity 1 21 0 199 269 128 0 chr1 111874616 111874694 -170318970 - MIR SINE MIR -87 175 88 480 339 51 0 chr1 111875079 111875274 -170318390 + MIR SINE MIR 46 250 -12 243 413 14 7 chr1 111875519 111875675 -170317989 - L2 LINE L2 -353 2919 2765 297 229 16 16 chr1 111876887 111876948 -170316716 - L2 LINE L2 -62 3210 3150 318 159 16 16 chr1 111877982 111878045 -170315619 - MIR SINE MIR -125 137 75 405 207 91 8 chr1 111878142 111878263 -170315401 + MER117 DNA MER1_type 59 189 -8 330 323 6 70 chr1 111878332 111878490 -170315174 - L2 LINE L2 -188 3084 2937 382 262 213 22 chr1 111878528 111878711 -170314953 - MIR SINE MIR -15 247 30 274 282 113 8 chr1 111878750 111878874 -170314790 - L2 LINE L2 -925 2389 2253 348 317 17 17 chr1 111879719 111879899 -170313765 - L1MEd LINE L1 -5492 627 448 530 243 14 14 chr1 111880101 111880241 -170313423 - MIR SINE MIR 0 262 123 3527 109 76 56 chr1 111880282 111880904 -170312760 - MER51A LTR ERV1 0 634 1 196 311 33 0 chr1 111881610 111881671 -170311993 - L2 LINE L2 -1 3271 3209 182 232 0 18 chr1 111881746 111881802 -170311862 + CT-rich Low_complexity Low_complexity 2 56 0 192 386 85 0 chr1 111882817 111883006 -170310658 - L2 LINE L2 -459 2855 2651 458 289 20 27 chr1 111883212 111883361 -170310303 - MIR SINE MIR -94 168 21 185 346 0 0 chr1 111885710 111885788 -170307876 - MIR SINE MIR -2 260 183 405 278 67 90 chr1 111886422 111886767 -170306897 + L2 LINE L2 2931 3267 -5 1824 136 0 18 chr1 111887850 111888122 -170305542 - AluSx SINE Alu -15 297 31 269 248 120 32 chr1 111888536 111888661 -170305003 + L3 LINE CR1 1104 1239 -338 788 346 140 21 chr1 111888823 111889669 -170303995 + L2 LINE L2 2071 3061 -252 357 319 71 16 chr1 111889755 111889937 -170303727 - L2 LINE L2 -429 2885 2694 1606 186 91 71 chr1 111889940 111890391 -170303273 + MLT1C LTR MaLR 8 467 0 259 293 104 9 chr1 111890393 111890499 -170303165 - L2 LINE L2 -615 2699 2584 411 270 27 0 chr1 111890596 111890707 -170302957 + L2 LINE L2 2202 2315 -999 274 264 57 71 chr1 111890826 111890966 -170302698 + L3 LINE CR1 1340 1477 -100 2165 176 20 17 chr1 111891771 111892230 -170301434 - L1MB2 LINE L1 0 6171 5712 2355 153 20 46 chr1 111892365 111892409 -170301255 - MSTA LTR MaLR 0 428 384 2232 124 3 0 chr1 111892409 111892716 -170300948 + AluSx SINE Alu 3 310 -2 2355 153 20 46 chr1 111892716 111893110 -170300554 - MSTA LTR MaLR -44 384 1 4052 142 9 10 chr1 111893110 111893799 -170299865 - MSTA-int LTR MaLR 0 1580 893 2880 178 13 2 chr1 111893774 111894320 -170299344 - MSTA-int LTR MaLR -1098 553 2 * 2393 156 17 5 chr1 111894321 111894739 -170298925 - MSTA LTR MaLR 0 428 6 2057 112 0 14 chr1 111894981 111895293 -170298371 + AluSx SINE Alu 1 308 0 4132 147 32 1 chr1 111895330 111896072 -170297592 + L1PB4 LINE L1 5263 6027 -129 761 223 63 48 chr1 111896395 111896601 -170297063 - MER58A DNA MER1_type -15 209 1 526 385 62 19 chr1 111896628 111896953 -170296711 + L2 LINE L2 2927 3265 -7 762 236 78 33 chr1 111897656 111897898 -170295766 - MIR SINE MIR -2 260 8 399 202 0 0 chr1 111899088 111899177 -170294487 + (TCCA)n Simple_repeat Simple_repeat 1 89 0 494 256 52 52 chr1 111899196 111899407 -170294257 + L2 LINE L2 3086 3296 -17 180 409 55 27 chr1 111899426 111899536 -170294128 - L2 LINE L2 -9 3263 3151 310 92 15 0 chr1 111900574 111900639 -170293025 - L1MA7 LINE L1 0 6291 6226 189 147 0 0 chr1 111900639 111900673 -170292991 + (CA)n Simple_repeat Simple_repeat 1 34 0 33 25 0 0 chr1 111900895 111900935 -170292729 + AT_rich Low_complexity Low_complexity 1 40 0 34 0 0 0 chr1 111901215 111901249 -170292415 + AT_rich Low_complexity Low_complexity 1 34 0 912 142 0 0 chr1 111901249 111901383 -170292281 - AluJo SINE Alu -178 134 1 446 268 82 36 chr1 111901472 111901692 -170291972 + MIR SINE MIR 7 236 -26 266 245 86 0 chr1 111904045 111904202 -170289462 + L1MC4a LINE L1 5754 5818 -303 2742 166 27 16 chr1 111904411 111904924 -170288740 - L1MD2 LINE L1 -12 6347 5829 1201 174 25 35 chr1 111904924 111905240 -170288424 - L1MDa LINE L1 -3907 2633 2321 22 0 0 0 chr1 111905306 111905328 -170288336 + AT_rich Low_complexity Low_complexity 1 22 0 1451 173 210 14 chr1 111905574 111905748 -170287916 - MSTA LTR MaLR -6 422 283 189 0 0 0 chr1 111905748 111905769 -170287895 + (GA)n Simple_repeat Simple_repeat 2 22 0 1451 173 210 14 chr1 111905769 111905947 -170287717 - MSTA LTR MaLR -145 283 1 407 301 98 7 chr1 111905977 111906130 -170287534 + MIR SINE MIR 67 233 -29 189 256 174 12 chr1 111907148 111907234 -170286430 + MIR SINE MIR 80 179 -83 547 110 55 0 chr1 111907272 111907363 -170286301 - AluSg/x SINE Alu 0 312 217 291 309 27 72 chr1 111907376 111907599 -170286065 - L2 LINE L2 -183 3089 2877 275 231 152 74 chr1 111909227 111909590 -170284074 + L1ME4a LINE L1 5689 6079 -42 1030 266 93 57 chr1 111909639 111910396 -170283268 + L2 LINE L2 2509 3292 -21 205 337 148 0 chr1 111910534 111910635 -170283029 - L2 LINE L2 -23 3249 3134 2631 231 81 56 chr1 111914310 111915753 -170277911 - L1MC5 LINE L1 -47 7914 6442 333 0 0 0 chr1 111915757 111915794 -170277870 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 109 0 0 chr1 111916341 111916644 -170277020 - AluSg SINE Alu -7 303 1 225 94 0 0 chr1 111916925 111916957 -170276707 + (T)n Simple_repeat Simple_repeat 1 32 0 2134 25 0 0 chr1 112017365 112017643 -170176021 - L1PA3 LINE L1 0 6155 5894 2219 151 3 24 chr1 112018569 112018941 -170174723 + THE1B LTR MaLR 1 364 0 468 172 23 11 chr1 112018973 112019060 -170174604 + AluS SINE Alu 1 88 -225 1251 144 15 0 chr1 112019189 112019384 -170174280 + AluJb SINE Alu 115 312 0 462 296 159 32 chr1 112019449 112019669 -170173995 + MIR SINE MIR 14 261 -1 377 207 233 0 chr1 112019853 112019969 -170173695 + MLT2F LTR ERVL 102 244 -419 278 285 46 46 chr1 112021118 112021269 -170172395 - MIR SINE MIR -9 253 103 1975 173 0 0 chr1 112022044 112022345 -170171319 - AluJb SINE Alu -11 301 1 323 299 123 5 chr1 112022389 112022794 -170170870 - L1M4 LINE L1 -3584 2562 2110 205 235 12 12 chr1 112022823 112022904 -170170760 + CT-rich Low_complexity Low_complexity 4 84 0 192 152 0 0 chr1 112022975 112023008 -170170656 + (CA)n Simple_repeat Simple_repeat 2 34 0 232 319 11 0 chr1 112023013 112023107 -170170557 + (TA)n Simple_repeat Simple_repeat 1 95 0 422 314 7 0 chr1 112023167 112023320 -170170344 - HAL1 LINE L1 -860 1647 1494 943 227 4 31 chr1 112023945 112024170 -170169494 - MER20 DNA MER1_type 0 219 1 1085 170 4 52 chr1 112024868 112025097 -170168567 - MER20 DNA MER1_type -1 218 1 1022 101 7 0 chr1 112026624 112026773 -170166891 + MER41A LTR ERV1 405 554 0 392 156 33 56 chr1 112026773 112026863 -170166801 + MER41A-int LTR ERV1 1 88 -5858 * 9183 79 33 15 chr1 112026858 112028143 -170165521 + MER41B-int LTR ERV1 4639 5946 0 3324 117 54 8 chr1 112028145 112028667 -170164997 + MER41B LTR ERV1 3 548 -87 1835 114 28 0 chr1 112028733 112028988 -170164676 - AluSg SINE Alu -10 300 39 2536 255 38 13 chr1 112029466 112030069 -170163595 - MLT2E LTR ERVL -7 621 4 1013 212 84 64 chr1 112030231 112030684 -170162980 + MLT1G1 LTR MaLR 1 555 -35 337 127 18 0 chr1 112031000 112031055 -170162609 + L2 LINE L2 3258 3313 0 311 315 84 46 chr1 112031652 112031890 -170161774 + MIR SINE MIR 16 262 0 4773 145 23 15 chr1 112031998 112032889 -170160775 - L1PA14 LINE L1 0 6168 5295 1477 80 156 11 chr1 112032889 112033152 -170160512 - AluY SINE Alu 0 301 1 4773 145 23 15 chr1 112033152 112033966 -170159698 - L1PA14 LINE L1 -873 5295 4489 392 306 50 6 chr1 112036555 112036735 -170156929 + L1ME4a LINE L1 4975 5162 -984 312 296 114 32 chr1 112036726 112036946 -170156718 + L1ME4a LINE L1 5661 5898 -223 * 312 255 102 0 chr1 112037044 112037142 -170156522 - L1MC4 LINE L1 -26 8016 7909 273 353 83 13 chr1 112037172 112037328 -170156336 - L3 LINE CR1 -59 1518 1352 270 75 0 0 chr1 112037468 112037508 -170156156 + L1PA8 LINE L1 6129 6168 -4 267 31 0 0 chr1 112038077 112038109 -170155555 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr1 112038108 112038137 -170155527 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 34 0 0 0 chr1 112039792 112039826 -170153838 + AT_rich Low_complexity Low_complexity 1 34 0 201 313 16 0 chr1 112040748 112040812 -170152852 + MIR SINE MIR 87 151 -111 21 0 0 0 chr1 112042389 112042410 -170151254 + AT_rich Low_complexity Low_complexity 1 21 0 248 278 42 0 chr1 112043260 112043332 -170150332 - L2 LINE L2 -8 3264 3190 201 308 31 0 chr1 112043731 112043796 -170149868 - MIR SINE MIR -11 251 185 291 167 0 33 chr1 112043943 112044003 -170149661 - L2 LINE L2 0 3313 3256 374 252 93 43 chr1 112044082 112044221 -170149443 - MIR SINE MIR -110 152 7 2674 167 24 9 chr1 112044341 112044886 -170148778 - L1MC/D LINE L1 -499 5743 5198 1943 105 24 20 chr1 112044965 112045260 -170148404 - AluSx SINE Alu -14 298 3 1129 103 0 11 chr1 112045365 112045549 -170148115 - L1MA4 LINE L1 -12 6288 6107 3970 236 81 24 chr1 112045550 112048176 -170145488 - L1MDa LINE L1 -2417 4123 1339 21 0 0 0 chr1 112049395 112049416 -170144248 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 112049687 112049710 -170143954 + AT_rich Low_complexity Low_complexity 1 23 0 483 251 86 55 chr1 112050021 112050348 -170143316 - L1MEd LINE L1 -4973 1232 953 180 111 0 0 chr1 112050770 112050797 -170142867 + (T)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr1 112050819 112050845 -170142819 + AT_rich Low_complexity Low_complexity 1 26 0 6251 140 0 0 chr1 112050845 112051817 -170141847 - L1PA4 LINE L1 -3 6152 5184 26 0 0 0 chr1 112051939 112051965 -170141699 + AT_rich Low_complexity Low_complexity 1 26 0 1703 130 25 14 chr1 112052519 112052796 -170140868 + AluSx SINE Alu 1 280 -32 3074 110 15 4 chr1 112052801 112053257 -170140407 - L1PA11 LINE L1 -4 6170 5710 257 0 30 0 chr1 112053904 112053937 -170139727 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 33 66 0 0 chr1 112055300 112055361 -170138303 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 112056280 112056303 -170137361 + AT_rich Low_complexity Low_complexity 1 23 0 347 130 13 0 chr1 112056331 112056408 -170137256 + GA-rich Low_complexity Low_complexity 1 78 0 556 125 0 0 chr1 112056608 112056696 -170136968 + L1PA5 LINE L1 6067 6154 0 189 74 0 0 chr1 112056726 112056753 -170136911 + (A)n Simple_repeat Simple_repeat 1 27 0 1914 155 0 3 chr1 112056756 112057053 -170136611 + AluJb SINE Alu 1 296 -16 186 71 0 0 chr1 112057062 112057090 -170136574 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 284 309 0 15 chr1 112058358 112058426 -170135238 + L2 LINE L2 3194 3260 -12 220 329 12 0 chr1 112058724 112058809 -170134855 - L2 LINE L2 -2 3270 3185 484 286 69 23 chr1 112058838 112059013 -170134651 - MIR SINE MIR -30 232 50 198 103 0 0 chr1 112059225 112059254 -170134410 + (TG)n Simple_repeat Simple_repeat 2 30 0 1308 150 17 77 chr1 112059274 112059574 -170134090 - L1MA7 LINE L1 -23 6268 5987 473 298 46 0 chr1 112059588 112059739 -170133925 + MIR SINE MIR 105 262 0 5886 158 4 14 chr1 112059752 112061505 -170132159 - L1PB4 LINE L1 -215 5941 4124 540 152 67 73 chr1 112062345 112062510 -170131154 + MER106B DNA MER1_type 896 1059 0 859 249 17 21 chr1 112063192 112063425 -170130239 - MIR SINE MIR -2 260 29 342 337 71 33 chr1 112063397 112063581 -170130083 + MIR3 SINE MIR 14 204 -4 * 414 234 72 0 chr1 112063635 112063746 -170129918 + MIR SINE MIR 82 200 -62 207 0 0 0 chr1 112064335 112064358 -170129306 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 2089 123 0 0 chr1 112064366 112064651 -170129013 - AluSx SINE Alu -27 285 1 219 250 0 0 chr1 112065433 112065493 -170128171 + (TA)n Simple_repeat Simple_repeat 2 61 0 770 265 126 25 chr1 112065533 112065771 -170127893 + MIR SINE MIR 1 262 0 310 291 21 71 chr1 112067444 112067585 -170126079 + L1ME4a LINE L1 5891 6024 -97 323 310 31 68 chr1 112067668 112067859 -170125805 - MIR SINE MIR -60 148 10 2176 122 3 22 chr1 112068986 112069298 -170124366 - AluSx SINE Alu -6 306 1 535 326 127 5 chr1 112070020 112070241 -170123423 + MIR SINE MIR 1 248 -14 754 239 17 6 chr1 112071375 112071551 -170122113 - MER5B DNA MER1_type 0 178 1 2185 123 3 0 chr1 112071904 112072213 -170121451 + AluSg SINE Alu 1 310 0 1974 157 3 0 chr1 112073010 112073315 -170120349 + AluJo SINE Alu 7 312 0 549 378 47 22 chr1 112073337 112073702 -170119962 + L1MEc LINE L1 46 419 -5977 236 295 62 42 chr1 112073952 112074352 -170119312 + L1MEc LINE L1 656 1063 -5333 322 161 0 0 chr1 112074609 112074665 -170118999 - MLT1C LTR MaLR 0 467 412 3452 135 8 0 chr1 112074665 112075184 -170118480 + MER1A DNA MER1_type 1 523 -6 930 133 94 15 chr1 112075183 112075406 -170118258 - MLT1C LTR MaLR -36 421 187 * 2742 126 14 21 chr1 112075505 112075941 -170117723 + Tigger2a DNA MER2_type 1 433 -1 1528 199 41 21 chr1 112075990 112076281 -170117383 - AluJo SINE Alu -15 297 1 189 0 0 0 chr1 112076689 112076710 -170116954 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 580 263 66 13 chr1 112076755 112076905 -170116759 + MER77 LTR ERV1 52 209 -396 2383 135 71 9 chr1 112076905 112077326 -170116338 - LTR44 LTR ERV1 0 519 73 356 270 0 11 chr1 112077356 112077445 -170116219 + MER77 LTR ERV1 510 597 -8 251 156 0 22 chr1 112077682 112077727 -170115937 - L2 LINE L2 0 3272 3229 518 191 145 0 chr1 112077972 112078103 -170115561 + MIR SINE MIR 103 252 -10 2209 70 46 0 chr1 112078951 112079235 -170114429 + AluY SINE Alu 1 297 -14 256 169 0 0 chr1 112079275 112079324 -170114340 - MIR SINE MIR -102 106 60 3830 138 21 2 chr1 112079340 112079963 -170113701 + MER41B LTR ERV1 1 635 0 413 382 0 11 chr1 112079984 112080170 -170113494 - MER5A DNA MER1_type -3 186 3 236 175 0 0 chr1 112081117 112081157 -170112507 + MIR3 SINE MIR 121 160 -48 625 258 33 0 chr1 112081193 112081344 -170112320 - MER58A DNA MER1_type 0 159 4 387 277 71 38 chr1 112081505 112081655 -170112009 - MIR SINE MIR -31 231 72 2048 182 20 0 chr1 112081655 112082013 -170111651 - MLT1A1 LTR MaLR 0 365 1 387 277 71 38 chr1 112082013 112082046 -170111618 - MIR SINE MIR -190 72 42 2150 115 0 10 chr1 112082082 112082378 -170111286 - AluSg SINE Alu -17 293 1 2263 154 13 13 chr1 112085450 112085840 -170107824 + MLT1B LTR MaLR 1 390 0 835 220 117 5 chr1 112086161 112086375 -170107289 + MIR SINE MIR 3 240 -22 280 328 17 35 chr1 112086385 112086501 -170107163 + MIR SINE MIR 149 262 0 2120 136 39 121 chr1 112086690 112087154 -170106510 + MSTB LTR MaLR 1 426 0 505 308 58 36 chr1 112087949 112088173 -170105491 + MIR SINE MIR 15 243 -19 297 0 0 0 chr1 112088174 112088207 -170105457 + (GA)n Simple_repeat Simple_repeat 2 34 0 585 206 13 32 chr1 112088293 112088448 -170105216 + MER97a DNA MER1_type? 26 177 -717 189 366 25 47 chr1 112088512 112088747 -170104917 + L2 LINE L2 2820 3049 -223 416 326 177 7 chr1 112089856 112090150 -170103514 + L3 LINE CR1 1230 1573 -4 838 186 87 135 chr1 112090846 112091239 -170102425 - LTR41 LTR ERVL -6 767 394 380 230 29 11 chr1 112091300 112091474 -170102190 - L1MCc LINE L1 -2945 3996 3820 2801 116 23 0 chr1 112091485 112091926 -170101738 + L1PA13 LINE L1 5711 6161 -2 1295 268 83 29 chr1 112091987 112092355 -170101309 - L1MCc LINE L1 -3757 3203 2856 2300 172 18 15 chr1 112092355 112092750 -170100914 + MSTD LTR MaLR 1 396 0 1295 268 83 29 chr1 112092750 112093251 -170100413 - L1MCc LINE L1 -4104 2856 2384 7546 28 6 5 chr1 112093251 112094672 -170098992 - L1PA4 LINE L1 0 6155 4737 1295 268 83 29 chr1 112094672 112095613 -170098051 - L1MCc LINE L1 -4576 2384 1165 1929 155 42 33 chr1 112096478 112096839 -170096825 - THE1B LTR MaLR 0 364 1 506 249 90 11 chr1 112097536 112097725 -170095939 - MLT1J LTR MaLR -244 267 64 458 38 0 255 chr1 112097737 112097789 -170095875 - MADE1 DNA Mariner -1 79 66 2319 107 0 7 chr1 112097789 112098099 -170095565 + AluSq SINE Alu 1 308 -5 458 38 0 255 chr1 112098099 112098152 -170095512 - MADE1 DNA Mariner -14 66 1 28 48 0 0 chr1 112099001 112099043 -170094621 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 112099123 112099144 -170094520 + AT_rich Low_complexity Low_complexity 1 21 0 1749 119 29 7 chr1 112099453 112099763 -170093901 - L1MA5A LINE L1 -3 6294 5978 3302 65 11 5 chr1 112099767 112100212 -170093452 - LTR7 LTR ERV1 -2 448 1 2397 71 45 13 chr1 112100212 112100590 -170093074 - HERVH LTR ERV1 0 7713 7324 1271 133 18 9 chr1 112100590 112100808 -170092856 - HERVH LTR ERV1 -1894 5819 5600 4102 140 3 1 chr1 112100812 112101470 -170092194 - HERVH LTR ERV1 -2567 5146 4488 3105 119 4 6 chr1 112101472 112101975 -170091689 - HERVH LTR ERV1 -3720 3993 3492 * 19088 89 64 37 chr1 112101965 112105169 -170088495 - HERVH LTR ERV1 -4423 3290 1 3441 60 0 11 chr1 112105171 112105624 -170088040 - LTR7 LTR ERV1 -2 448 1 5980 69 15 298 chr1 112105665 112107561 -170086103 - SVA Other Other 0 1386 27 288 167 0 33 chr1 112107591 112107651 -170086013 + L2 LINE L2 3256 3313 0 6342 191 19 63 chr1 112107813 112108714 -170084950 - L1 LINE L1 -2186 3960 3172 766 168 0 30 chr1 112108714 112108845 -170084819 - FLAM_A SINE Alu -5 128 2 6342 191 19 63 chr1 112108845 112109710 -170083954 - L1 LINE L1 -2974 3172 2271 1245 216 24 68 chr1 112109726 112110081 -170083583 + L1ME3A LINE L1 5761 6097 -73 1814 155 7 29 chr1 112110081 112110390 -170083274 + AluJb SINE Alu 1 302 -10 1245 216 24 68 chr1 112110390 112110447 -170083217 + L1ME3A LINE L1 6097 6155 -15 395 329 61 43 chr1 112110460 112110714 -170082950 + L2 LINE L2 2777 3047 -266 1110 281 97 48 chr1 112110718 112111293 -170082371 + L2 LINE L2 2719 3313 0 21 0 0 0 chr1 112111603 112111624 -170082040 + AT_rich Low_complexity Low_complexity 1 21 0 293 239 195 9 chr1 112112187 112112300 -170081364 + MIR3 SINE MIR 50 183 -25 371 300 33 8 chr1 112112407 112112527 -170081137 - L2 LINE L2 0 3313 3191 54 40 0 0 chr1 112112742 112112817 -170080847 + AT_rich Low_complexity Low_complexity 1 75 0 333 0 0 0 chr1 112113002 112113039 -170080625 + (TG)n Simple_repeat Simple_repeat 2 38 0 875 300 8 16 chr1 112113478 112113728 -170079936 + MIR SINE MIR 15 262 0 1895 74 0 0 chr1 112114937 112114995 -170078669 + AluSq SINE Alu 74 131 -182 558 108 0 0 chr1 112114995 112115078 -170078586 + (CA)n Simple_repeat Simple_repeat 2 84 0 1895 74 0 0 chr1 112115078 112115250 -170078414 + AluSq SINE Alu 130 304 -9 39 22 0 0 chr1 112115774 112115820 -170077844 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr1 112116624 112116653 -170077011 + AT_rich Low_complexity Low_complexity 1 29 0 406 274 113 16 chr1 112117853 112117977 -170075687 - MER5A DNA MER1_type -19 170 35 380 258 137 16 chr1 112117867 112117991 -170075673 + MER5A DNA MER1_type 45 183 -6 * 300 281 132 24 chr1 112118148 112118315 -170075349 - MIR SINE MIR -4 258 74 290 387 43 33 chr1 112118321 112118623 -170075041 + L2 LINE L2 2145 2449 -865 677 229 29 123 chr1 112118725 112119074 -170074590 - MLT1H LTR MaLR -3 546 231 355 314 118 39 chr1 112119239 112119443 -170074221 + L2 LINE L2 2616 2835 -479 469 387 135 4 chr1 112119594 112119860 -170073804 + L2 LINE L2 2967 3267 -5 205 220 18 59 chr1 112120644 112120715 -170072949 + MIR SINE MIR 103 151 -57 401 346 136 31 chr1 112120806 112121092 -170072572 - L2 LINE L2 -4 3268 2953 436 212 0 10 chr1 112121844 112121943 -170071721 + MER94 DNA DNA 37 134 0 590 231 202 49 chr1 112122087 112122290 -170071374 + MIR SINE MIR 2 235 -27 745 196 25 13 chr1 112122757 112122915 -170070749 - MIR SINE MIR 0 262 103 202 100 0 0 chr1 112124033 112124063 -170069601 - L2 LINE L2 0 3272 3243 236 282 103 34 chr1 112127258 112127492 -170066172 - L1ME4a LINE L1 -3 6118 5869 371 315 14 7 chr1 112128012 112128155 -170065509 + MIR SINE MIR 49 192 -70 778 129 17 0 chr1 112128180 112128296 -170065368 + FLAM_C SINE Alu 1 118 -25 35 24 0 0 chr1 112128298 112128340 -170065324 + AT_rich Low_complexity Low_complexity 1 42 0 260 234 0 0 chr1 112128347 112128394 -170065270 + L2 LINE L2 3213 3259 -13 187 77 26 26 chr1 112129243 112129282 -170064382 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2047 120 3 39 chr1 112129297 112129606 -170064058 - AluSx SINE Alu -14 298 1 434 292 26 58 chr1 112129718 112129944 -170063720 - L2 LINE L2 -501 2813 2595 2468 57 0 7 chr1 112130980 112131280 -170062384 - AluY SINE Alu -13 298 1 2336 114 46 8 chr1 112131350 112131701 -170061963 - THE1B LTR MaLR 0 364 1 269 328 90 8 chr1 112131974 112132096 -170061568 + L2 LINE L2 3137 3268 -4 2980 238 49 55 chr1 112132140 112133496 -170060168 - L1MD3 LINE L1 -5 7990 6643 225 172 35 0 chr1 112133630 112133688 -170059976 - L1PA16 LINE L1 -10 6156 6097 5060 170 28 4 chr1 112133691 112135574 -170058090 - L1PA16 LINE L1 -108 6058 4125 2654 221 45 9 chr1 112135573 112136428 -170057236 - L1MC3 LINE L1 -1199 6586 5566 * 379 131 135 8 chr1 112137589 112137692 -170055972 + MER45 DNA AcHobo 1 123 -55 466 239 9 0 chr1 112137699 112137812 -170055852 - L1ME4a LINE L1 -1969 5816 5703 270 159 0 0 chr1 112137858 112137902 -170055762 + MER45 DNA AcHobo 1535 1578 -3 222 379 0 0 chr1 112138275 112138362 -170055302 + MIR SINE MIR 26 112 -150 2594 128 39 29 chr1 112138379 112138895 -170054769 - L1MA7 LINE L1 -25 6266 5746 2160 115 0 14 chr1 112138923 112139219 -170054445 + AluSg1 SINE Alu 1 292 -17 22 80 0 0 chr1 112140277 112140327 -170053337 + AT_rich Low_complexity Low_complexity 1 50 0 511 294 35 24 chr1 112140405 112140575 -170053089 - MIR3 SINE MIR -16 192 21 902 216 0 0 chr1 112141139 112141301 -170052363 + FRAM SINE Alu 2 163 -3 462 320 0 0 chr1 112141388 112141513 -170052151 + MLT2F LTR ERVL 480 604 -59 225 0 0 0 chr1 112141562 112141587 -170052077 + (CA)n Simple_repeat Simple_repeat 2 26 0 3379 145 9 5 chr1 112141706 112142266 -170051398 + L1MC1 LINE L1 5772 6333 0 710 238 38 26 chr1 112142275 112142540 -170051124 + MLT1F-int LTR MaLR 311 578 -793 2310 109 3 0 chr1 112143070 112143381 -170050283 + AluSx SINE Alu 1 312 0 401 288 89 68 chr1 112143481 112143818 -170049846 + MLT1F-int LTR MaLR 1028 1371 0 1422 249 119 28 chr1 112143821 112144315 -170049349 + MLT1F LTR MaLR 4 542 0 1907 121 51 0 chr1 112144578 112144851 -170048813 - AluSc SINE Alu -7 302 16 376 268 221 0 chr1 112144925 112145052 -170048612 - MIR SINE MIR -72 190 36 378 288 27 18 chr1 112146005 112146116 -170047548 + MIR SINE MIR 151 262 0 189 0 0 0 chr1 112147056 112147077 -170046587 + (T)n Simple_repeat Simple_repeat 1 21 0 284 355 11 0 chr1 112148599 112148692 -170044972 - MIR3 SINE MIR 0 208 115 2524 85 0 0 chr1 112148729 112149036 -170044628 + AluSc SINE Alu 1 307 -2 2003 158 0 13 chr1 112149250 112149566 -170044098 + AluSx SINE Alu 1 312 0 315 71 0 0 chr1 112149576 112149618 -170044046 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 458 278 119 13 chr1 112150442 112150593 -170043071 - L2 LINE L2 0 3272 3106 1736 198 0 10 chr1 112151203 112151491 -170042173 - AluJb SINE Alu -27 285 1 22 0 0 0 chr1 112151656 112151678 -170041986 + AT_rich Low_complexity Low_complexity 1 22 0 1061 278 117 34 chr1 112151678 112152268 -170041396 - L2 LINE L2 -133 3180 2412 2040 132 10 7 chr1 112152268 112152564 -170041100 + AluSq SINE Alu 1 297 -16 1061 278 117 34 chr1 112152564 112152687 -170040977 - L2 LINE L2 -901 2412 2301 2006 268 102 74 chr1 112152688 112153147 -170040517 - L2 LINE L2 -1498 1816 1372 1732 148 48 17 chr1 112153147 112153437 -170040227 + AluJo SINE Alu 1 299 -13 2006 268 102 74 chr1 112153437 112153963 -170039701 - L2 LINE L2 -1942 1372 803 2466 157 26 4 chr1 112154408 112154872 -170038792 + L1MB8 LINE L1 5696 6169 -9 513 351 48 17 chr1 112155136 112155367 -170038297 + MIR SINE MIR 8 245 -17 1220 94 120 90 chr1 112156144 112156378 -170037286 + AluSg/x SINE Alu 68 308 -4 369 244 76 17 chr1 112156422 112156541 -170037123 + MLT1J LTR MaLR 1 126 -385 1227 287 149 21 chr1 112156629 112157375 -170036289 + L2 LINE L2 1527 2367 -947 782 284 47 8 chr1 112157554 112157790 -170035874 + LTR16B LTR ERVL 107 351 -113 626 271 64 61 chr1 112158723 112159018 -170034646 + L2 LINE L2 3017 3312 -1 2667 141 31 4 chr1 112159318 112159773 -170033891 - MER41B LTR ERV1 -88 547 81 344 245 0 10 chr1 112162704 112162806 -170030858 + G-rich Low_complexity Low_complexity 2 102 0 233 250 17 17 chr1 112163396 112163456 -170030208 + MIR SINE MIR 89 148 -114 230 366 66 26 chr1 112163662 112163889 -170029775 - MIR SINE MIR -12 250 15 212 220 20 0 chr1 112163943 112163993 -170029671 + (TA)n Simple_repeat Simple_repeat 1 51 0 365 313 21 35 chr1 112166274 112166418 -170027246 + MIR SINE MIR 3 144 -118 886 302 49 29 chr1 112166470 112166818 -170026846 - L2 LINE L2 -7 3306 2952 * 1013 234 80 29 chr1 112166812 112167124 -170026540 - L2 LINE L2 -1046 2268 1941 234 174 0 0 chr1 112167573 112167619 -170026045 + GA-rich Low_complexity Low_complexity 2 47 0 187 373 45 27 chr1 112168564 112168674 -170024990 + L2 LINE L2 3116 3227 -45 1540 265 163 30 chr1 112168924 112169732 -170023932 + L2 LINE L2 2236 3141 -172 640 254 48 16 chr1 112169732 112169921 -170023743 + LTR16B LTR ERVL 6 200 -264 482 220 193 20 chr1 112170007 112170157 -170023507 - L2 LINE L2 -2 3311 3136 240 247 101 25 chr1 112170157 112170315 -170023349 - LTR16B LTR ERVL -2 462 293 374 289 53 48 chr1 112170891 112171078 -170022586 - HAL1 LINE L1 -1744 763 576 472 209 148 0 chr1 112171167 112171282 -170022382 + MIR SINE MIR 34 165 -97 235 280 0 0 chr1 112176248 112176298 -170017366 - L2 LINE L2 -5 3308 3259 194 307 22 22 chr1 112176301 112176438 -170017226 - L2 LINE L2 -178 3135 2999 306 0 0 0 chr1 112176584 112176618 -170017046 + (A)n Simple_repeat Simple_repeat 1 34 0 776 258 0 0 chr1 112176918 112177096 -170016568 - MER45A DNA AcHobo 0 178 1 22 56 0 0 chr1 112177892 112177928 -170015736 + AT_rich Low_complexity Low_complexity 1 36 0 207 318 30 0 chr1 112178438 112178504 -170015160 - MIR SINE MIR -108 154 87 2117 125 0 0 chr1 112178619 112178899 -170014765 + AluSx SINE Alu 1 280 -32 912 88 7 14 chr1 112178899 112179046 -170014618 + (GAAAA)n Simple_repeat Simple_repeat 5 150 0 197 0 71 0 chr1 112179451 112179479 -170014185 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 457 267 62 10 chr1 112179965 112180160 -170013504 - L3 LINE CR1 -75 1502 1298 221 360 137 12 chr1 112180170 112180331 -170013333 - L3 LINE CR1 -407 1170 990 332 281 47 0 chr1 112180501 112180629 -170013035 + L1 LINE L1 4266 4399 -1747 330 80 0 0 chr1 112181081 112181131 -170012533 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 28 61 0 0 chr1 112181587 112181636 -170012028 + AT_rich Low_complexity Low_complexity 1 49 0 426 343 69 42 chr1 112181679 112182014 -170011650 - L3 LINE CR1 -1199 378 35 324 120 0 0 chr1 112182223 112182273 -170011391 + (CA)n Simple_repeat Simple_repeat 2 51 0 490 315 45 25 chr1 112183008 112183208 -170010456 + MIR3 SINE MIR 4 207 -1 1969 159 0 10 chr1 112184321 112184629 -170009035 + AluSx SINE Alu 6 310 -2 1532 162 0 42 chr1 112184690 112184787 -170008877 + AluJo SINE Alu 46 145 -167 2472 52 3 16 chr1 112184787 112185097 -170008567 + AluY SINE Alu 1 306 -5 1532 162 0 42 chr1 112185097 112185264 -170008400 + AluJo SINE Alu 145 299 -13 452 358 75 0 chr1 112186585 112186786 -170006878 + MIR SINE MIR 15 230 -32 1205 182 0 33 chr1 112186991 112187205 -170006459 + AluJb SINE Alu 87 293 -19 695 289 130 34 chr1 112187284 112187692 -170005972 - MARNA DNA Mariner -42 544 98 25 31 0 0 chr1 112187697 112187729 -170005935 + AT_rich Low_complexity Low_complexity 1 32 0 835 237 27 5 chr1 112187741 112187927 -170005737 - MIR SINE MIR -32 230 41 21 0 0 0 chr1 112188579 112188600 -170005064 + AT_rich Low_complexity Low_complexity 1 21 0 187 161 36 0 chr1 112189869 112189925 -170003739 + (CA)n Simple_repeat Simple_repeat 1 58 0 609 273 99 19 chr1 112190266 112190427 -170003237 + MER91A DNA MER1_type 3 176 -20 234 343 0 0 chr1 112190683 112190750 -170002914 - L2 LINE L2 -5 3308 3242 1583 175 34 7 chr1 112194180 112194472 -169999192 - AluJb SINE Alu -12 300 1 360 211 276 8 chr1 112196176 112196299 -169997365 - MIR SINE MIR -50 212 57 407 298 28 24 chr1 112196657 112196834 -169996830 - MIR SINE MIR -50 212 33 206 118 0 0 chr1 112197189 112197223 -169996441 + (A)n Simple_repeat Simple_repeat 1 34 0 320 291 63 16 chr1 112197623 112197750 -169995914 + MIR SINE MIR 48 180 -82 623 275 99 6 chr1 112198019 112198201 -169995463 - MIR SINE MIR -14 248 50 232 203 0 87 chr1 112200101 112200170 -169993494 + L2 LINE L2 3251 3313 0 241 281 207 16 chr1 112200671 112200792 -169992872 - MIR SINE MIR -87 175 32 1425 126 29 4 chr1 112202383 112202621 -169991043 - Tigger2 DNA MER2_type -2474 244 1 392 300 89 98 chr1 112202936 112203263 -169990401 - L2 LINE L2 0 3272 2949 881 136 8 0 chr1 112203783 112203915 -169989749 + AluJb SINE Alu 1 133 -179 386 261 0 33 chr1 112204045 112204137 -169989527 + L2 LINE L2 3224 3312 -1 909 128 0 8 chr1 112205155 112205288 -169988376 - AluJb SINE Alu -180 132 1 546 308 67 0 chr1 112206094 112206289 -169987375 + MIR SINE MIR 49 256 -6 326 389 21 16 chr1 112206685 112206878 -169986786 - MIR3 SINE MIR 0 208 15 24 32 0 0 chr1 112207440 112207471 -169986193 + AT_rich Low_complexity Low_complexity 1 31 0 2185 106 0 22 chr1 112207896 112208208 -169985456 + AluSg SINE Alu 1 305 -5 262 222 0 0 chr1 112209087 112209150 -169984514 + T-rich Low_complexity Low_complexity 1 63 0 2384 34 0 10 chr1 112209151 112209445 -169984219 - L1PA4 LINE L1 0 6155 5865 411 258 46 33 chr1 112209598 112209749 -169983915 - MARNA DNA Mariner -76 510 358 1077 212 0 9 chr1 112210673 112210885 -169982779 + MER6B DNA MER2_type 1 210 0 257 280 83 24 chr1 112211025 112211193 -169982471 + L2 LINE L2 2242 2419 -895 2988 263 93 12 chr1 112211374 112212572 -169981092 - L1MC4 LINE L1 0 8042 6748 1886 155 0 16 chr1 112212788 112213092 -169980572 + AluJo SINE Alu 1 299 -13 741 167 0 51 chr1 112213971 112214109 -169979555 + FLAM_C SINE Alu 1 131 -2 1150 252 100 0 chr1 112214114 112214424 -169979240 - MER58B DNA MER1_type 0 341 1 1650 182 3 46 chr1 112214871 112215048 -169978616 - AluJb SINE Alu -2 310 152 2544 53 0 0 chr1 112215048 112215349 -169978315 - AluY SINE Alu -10 301 1 1650 182 3 46 chr1 112215349 112215495 -169978169 - AluJb SINE Alu -160 152 1 22 0 0 0 chr1 112215751 112215773 -169977891 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 112218464 112218486 -169975178 + AT_rich Low_complexity Low_complexity 1 22 0 543 245 87 25 chr1 112218680 112218876 -169974788 - MIR SINE MIR 0 262 55 1664 151 27 54 chr1 112218922 112219220 -169974444 + AluJo SINE Alu 3 292 -20 538 313 78 11 chr1 112219344 112219523 -169974141 - MIR SINE MIR -52 210 20 2178 130 122 8 chr1 112219554 112219938 -169973726 - MSTA LTR MaLR 0 428 1 442 274 86 17 chr1 112220326 112220501 -169973163 + MER5A DNA MER1_type 3 189 0 26 30 0 0 chr1 112220602 112220635 -169973029 + AT_rich Low_complexity Low_complexity 1 33 0 2113 133 43 0 chr1 112220643 112220966 -169972698 + MER1B DNA MER1_type 1 337 0 1015 276 114 39 chr1 112222109 112222405 -169971259 - L1M4 LINE L1 -1209 4937 4665 1516 134 4 8 chr1 112222405 112222643 -169971021 - AluJb SINE Alu -16 296 60 1015 276 114 39 chr1 112222643 112223498 -169970166 - L1M4 LINE L1 -1481 4665 3700 2023 156 7 0 chr1 112223627 112223934 -169969730 + AluJb SINE Alu 1 309 -3 2103 120 0 0 chr1 112224038 112224330 -169969334 + AluSg SINE Alu 1 292 -18 2127 115 0 26 chr1 112224569 112224881 -169968783 - AluSg SINE Alu -6 304 1 441 0 0 0 chr1 112225096 112225145 -169968519 + (TG)n Simple_repeat Simple_repeat 2 50 0 303 287 36 44 chr1 112225177 112225428 -169968236 - L1M4 LINE L1 -3149 2997 2749 387 250 7 40 chr1 112225504 112225656 -169968008 - L1ME LINE L1 -299 5822 5676 21 0 0 0 chr1 112226025 112226046 -169967618 + AT_rich Low_complexity Low_complexity 1 21 0 337 163 98 0 chr1 112226059 112226151 -169967513 - HAL1b LINE L1 -651 697 597 21 0 0 0 chr1 112226208 112226229 -169967435 + AT_rich Low_complexity Low_complexity 1 21 0 2293 91 10 0 chr1 112226552 112226850 -169966814 - AluY SINE Alu -10 301 1 326 135 19 0 chr1 112226983 112227035 -169966629 + MER5B DNA MER1_type 1 53 -125 216 282 13 64 chr1 112227020 112227098 -169966566 - MER5B DNA MER1_type -104 74 1 * 2103 133 0 0 chr1 112227351 112227653 -169966011 + AluSx SINE Alu 1 302 -10 731 265 107 26 chr1 112228048 112228282 -169965382 + MIR SINE MIR 7 259 -3 366 61 0 0 chr1 112229671 112229720 -169963944 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 1737 136 21 0 chr1 112230192 112230471 -169963193 - L1PB4 LINE L1 -7 6149 5865 204 216 0 0 chr1 112230499 112230536 -169963128 + L2 LINE L2 3265 3301 -12 739 304 46 34 chr1 112231146 112231583 -169962081 - MLT1J LTR MaLR -46 465 24 2115 107 27 7 chr1 112231898 112232197 -169961467 - AluSx SINE Alu -7 305 1 333 313 88 25 chr1 112232198 112232358 -169961306 - MIR SINE MIR -3 259 90 767 153 0 36 chr1 112232637 112232774 -169960890 + FLAM_C SINE Alu 2 133 0 442 276 59 58 chr1 112233531 112233726 -169959938 + MIR SINE MIR 8 202 -60 244 255 21 11 chr1 112234532 112234626 -169959038 + L1MC4 LINE L1 6609 6703 -1339 183 80 0 0 chr1 112234633 112234658 -169959006 + (TA)n Simple_repeat Simple_repeat 2 26 0 357 82 0 0 chr1 112234868 112234884 -169958780 + (TG)n Simple_repeat Simple_repeat 1 65 0 357 82 0 0 chr1 112234884 112234933 -169958731 + (TG)n Simple_repeat Simple_repeat 2 50 0 1236 170 5 22 chr1 112235432 112235655 -169958009 - MER20 DNA MER1_type 0 219 1 2112 108 0 0 chr1 112236529 112236798 -169956866 + AluSx SINE Alu 14 282 -30 1205 56 12 0 chr1 112236801 112236962 -169956702 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 1674 237 122 71 chr1 112236991 112237955 -169955709 + L2 LINE L2 2104 3191 -122 917 213 39 0 chr1 112237955 112238162 -169955502 + MER58C DNA MER1_type 1 215 0 1674 237 122 71 chr1 112238162 112238292 -169955372 + L2 LINE L2 3191 3313 0 189 0 0 0 chr1 112238313 112238334 -169955330 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 1518 183 34 8 chr1 112238340 112238608 -169955056 - AluJb SINE Alu -37 275 1 371 263 0 21 chr1 112238612 112238707 -169954957 - MIR SINE MIR -83 125 33 273 282 66 9 chr1 112238987 112239118 -169954546 - MIR SINE MIR -63 145 20 274 269 42 17 chr1 112241503 112241687 -169951977 - L2 LINE L2 0 3313 3043 1474 88 70 0 chr1 112248622 112248837 -169944827 + MER30 DNA MER1_type 1 230 0 643 211 75 0 chr1 112249867 112250028 -169943636 - L1MC3 LINE L1 -805 6980 6808 230 209 75 15 chr1 112250167 112250234 -169943430 - LTR16C LTR ERVL -12 479 409 359 237 97 9 chr1 112250623 112250737 -169942927 + MIR SINE MIR 66 189 -73 536 259 38 49 chr1 112250955 112251218 -169942446 - L1M4 LINE L1 -1197 4949 4690 1673 178 9 6 chr1 112251223 112251572 -169942092 - L1MC3 LINE L1 -21 7764 7415 1320 189 51 0 chr1 112251587 112251862 -169941802 - L1MC3 LINE L1 -805 6980 6692 516 253 81 0 chr1 112251859 112252033 -169941631 - L1M4 LINE L1 -1437 4709 4522 * 1918 117 55 33 chr1 112252443 112252810 -169940854 - THE1C LTR MaLR 0 375 1 244 279 0 0 chr1 112252910 112252978 -169940686 + GA-rich Low_complexity Low_complexity 2 69 0 2602 231 34 29 chr1 112253001 112253844 -169939820 - L1M4 LINE L1 -1827 4319 3472 4760 184 20 5 chr1 112253849 112255256 -169938408 - L1MB2 LINE L1 -2 6169 4740 542 231 15 15 chr1 112255485 112255619 -169938045 - L1MB2 LINE L1 -2018 4128 3995 584 318 65 18 chr1 112255624 112255901 -169937763 - L1ME LINE L1 -5643 427 138 677 220 12 59 chr1 112255912 112256167 -169937497 - L1M4 LINE L1 -857 5289 5047 271 260 115 0 chr1 112256163 112256259 -169937405 - L1ME LINE L1 -5947 123 17 * 2303 158 46 13 chr1 112256637 112257093 -169936571 - L1MB5 LINE L1 -10 6164 5694 583 190 101 0 chr1 112257106 112257264 -169936400 - L1MB3 LINE L1 -1 6182 6009 1669 120 4 0 chr1 112257267 112257500 -169936164 + AluSx SINE Alu 1 234 -78 541 66 0 0 chr1 112257562 112257638 -169936026 + AluSx SINE Alu 233 308 -1 731 173 19 43 chr1 112257641 112257803 -169935861 - L1MB3 LINE L1 -169 6011 5854 369 321 119 18 chr1 112257909 112258077 -169935587 - MIR SINE MIR -50 212 28 2908 140 78 64 chr1 112258249 112259063 -169934601 + LTR1 LTR ERV1 7 785 0 1836 138 0 69 chr1 112259895 112260215 -169933449 + AluJo SINE Alu 1 298 -14 1957 151 10 3 chr1 112260402 112260701 -169932963 + AluSx SINE Alu 1 301 -11 34 65 0 0 chr1 112261017 112261079 -169932585 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr1 112261196 112261217 -169932447 + AT_rich Low_complexity Low_complexity 1 21 0 2355 85 10 7 chr1 112262108 112262413 -169931251 + AluY SINE Alu 1 306 -5 333 0 0 0 chr1 112262414 112262451 -169931213 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr1 112263093 112263115 -169930549 + AT_rich Low_complexity Low_complexity 1 22 0 574 132 28 0 chr1 112263318 112263424 -169930240 - L1MA8 LINE L1 0 6291 6183 1744 177 3 3 chr1 112263473 112263785 -169929879 + AluJo SINE Alu 1 312 0 1740 168 0 9 chr1 112264960 112265276 -169928388 - L1PA16 LINE L1 -59 6107 5795 521 281 88 10 chr1 112266435 112266627 -169927037 - MIR SINE MIR 0 262 56 346 173 12 37 chr1 112266663 112266744 -169926920 + MADE1 DNA Mariner 2 80 0 903 246 40 9 chr1 112266889 112267117 -169926547 - MIR SINE MIR -22 240 6 2110 275 63 37 chr1 112267646 112267974 -169925690 - L2 LINE L2 -248 3065 2747 2348 75 0 33 chr1 112267974 112268281 -169925383 - AluY SINE Alu -14 297 1 2110 275 63 37 chr1 112268281 112268761 -169924903 - L2 LINE L2 -566 2747 2224 220 217 0 0 chr1 112268754 112268800 -169924864 + MIR SINE MIR 117 162 -100 * 866 150 0 0 chr1 112268836 112268956 -169924708 - FLAM_C SINE Alu -23 120 1 212 325 26 0 chr1 112268956 112269033 -169924631 + MIR SINE MIR 178 256 -6 196 329 43 31 chr1 112269775 112269936 -169923728 - L2 LINE L2 -1 3312 3150 699 120 56 0 chr1 112270116 112270258 -169923406 + Tigger2 DNA MER2_type 225 374 -2344 1193 144 0 6 chr1 112270258 112270432 -169923232 - AluJo SINE Alu -139 173 1 7356 116 21 45 chr1 112270432 112271035 -169922629 + Tigger2 DNA MER2_type 561 1177 -1541 1885 48 4 0 chr1 112271035 112271087 -169922577 + AluY SINE Alu 79 129 -182 2271 75 7 7 chr1 112271087 112271403 -169922261 + AluSp SINE Alu 1 313 0 1885 48 4 0 chr1 112271403 112271580 -169922084 + AluY SINE Alu 129 309 -2 7356 116 21 45 chr1 112271580 112271985 -169921679 + Tigger2 DNA MER2_type 1177 1590 -1128 2155 111 3 0 chr1 112271985 112272274 -169921390 + AluSx SINE Alu 1 290 -22 7356 116 21 45 chr1 112272274 112272293 -169921371 + Tigger2 DNA MER2_type 1590 1608 -1110 1963 146 85 46 chr1 112272293 112272705 -169920959 + MSTA LTR MaLR 1 428 0 7356 116 21 45 chr1 112272705 112273865 -169919799 + Tigger2 DNA MER2_type 1608 2717 -1 932 83 8 0 chr1 112274308 112274441 -169919223 + L1PA15 LINE L1 6030 6163 -2 269 254 18 0 chr1 112274494 112274549 -169919115 + L2 LINE L2 3250 3305 -8 269 299 39 0 chr1 112274559 112274686 -169918978 + MER103 DNA DNA 23 154 -12 21 0 0 0 chr1 112275384 112275405 -169918259 + AT_rich Low_complexity Low_complexity 1 21 0 308 276 149 0 chr1 112275511 112275598 -169918066 + MIR SINE MIR 47 146 -62 2055 105 35 3 chr1 112275623 112275909 -169917755 - AluSx SINE Alu -17 295 1 5449 142 91 17 chr1 112276628 112277481 -169916183 + L1MCa LINE L1 512 1301 -5125 2012 258 20 30 chr1 112277481 112278039 -169915625 + MLT2B3 LTR ERVL 1 552 -2 5449 142 91 17 chr1 112278039 112278575 -169915089 + L1MCa LINE L1 1301 2099 -4327 4321 107 27 57 chr1 112278609 112279212 -169914452 - Tigger1 DNA MER2_type -1631 787 210 820 134 0 8 chr1 112279212 112279331 -169914333 + FLAM_C SINE Alu 1 118 -15 4321 107 27 57 chr1 112279331 112279478 -169914186 - Tigger1 DNA MER2_type -2208 210 60 1716 181 0 14 chr1 112279529 112279822 -169913842 + AluJo SINE Alu 16 304 -8 852 137 0 0 chr1 112279822 112279939 -169913725 + FLAM_C SINE Alu 1 117 -26 43 20 0 0 chr1 112279942 112279992 -169913672 + AT_rich Low_complexity Low_complexity 1 50 0 394 171 0 0 chr1 112279993 112280069 -169913595 - Tigger1 DNA MER2_type -2341 77 2 2103 96 17 17 chr1 112280069 112280360 -169913304 + AluY SINE Alu 1 291 -20 1690 254 69 0 chr1 112280367 112280767 -169912897 + L1MCa LINE L1 2404 2775 -3651 1363 181 7 72 chr1 112280767 112281071 -169912593 + AluJo SINE Alu 1 284 -28 330 26 0 0 chr1 112281071 112281110 -169912554 + (GA)n Simple_repeat Simple_repeat 2 40 0 1690 254 69 0 chr1 112281110 112281371 -169912293 + L1MCa LINE L1 2774 3306 -3120 22 0 0 0 chr1 112281656 112281678 -169911986 + AT_rich Low_complexity Low_complexity 1 22 0 1426 176 15 41 chr1 112281721 112281988 -169911676 + AluJo SINE Alu 1 260 -52 215 200 0 17 chr1 112281991 112282051 -169911613 + GA-rich Low_complexity Low_complexity 2 60 0 278 379 90 0 chr1 112282199 112282344 -169911320 + MIR3 SINE MIR 45 202 -6 423 246 76 6 chr1 112283733 112283904 -169909760 + MER112 DNA MER1_type 77 259 -1 21 0 0 0 chr1 112284370 112284391 -169909273 + AT_rich Low_complexity Low_complexity 1 21 0 2546 117 63 20 chr1 112284454 112284900 -169908764 - MER4C LTR ERV1 0 465 1 4462 58 13 16 chr1 112284958 112285996 -169907668 + MER11A LTR ERVK 1 1266 0 251 258 243 15 chr1 112286390 112286516 -169907148 - MIR SINE MIR -62 146 3 2250 95 3 3 chr1 112287239 112287533 -169906131 - AluSx SINE Alu -18 294 1 1520 187 7 7 chr1 112287737 112288010 -169905654 - AluJb SINE Alu -39 273 1 374 254 72 66 chr1 112288222 112288403 -169905261 - MIR SINE MIR 0 262 81 214 228 262 48 chr1 112288467 112288612 -169905052 - MIR SINE MIR -3 259 84 207 162 0 0 chr1 112289038 112289075 -169904589 + T-rich Low_complexity Low_complexity 1 37 0 276 256 173 58 chr1 112289498 112289689 -169903975 + L2 LINE L2 2569 2781 -533 428 245 116 13 chr1 112290013 112290168 -169903496 + L1ME LINE L1 5483 5653 -468 2352 91 3 0 chr1 112290173 112290481 -169903183 + AluSp SINE Alu 4 312 -1 332 253 69 0 chr1 112290650 112290737 -169902927 - MIR SINE MIR -6 256 164 405 318 65 65 chr1 112291182 112291399 -169902265 + MIR SINE MIR 5 221 -41 2155 104 3 0 chr1 112291902 112292200 -169901464 + AluSp SINE Alu 1 299 -14 2233 63 0 14 chr1 112292202 112292529 -169901135 + AluY SINE Alu 1 323 0 25 31 0 0 chr1 112292854 112292886 -169900778 + AT_rich Low_complexity Low_complexity 1 32 0 242 232 0 0 chr1 112293715 112293771 -169899893 + T-rich Low_complexity Low_complexity 1 56 0 2955 158 18 87 chr1 112293819 112293940 -169899724 - LTR8 LTR ERV1 0 691 563 2052 96 4 4 chr1 112293940 112294263 -169899401 - AluSx SINE Alu 0 323 1 2955 158 18 87 chr1 112294263 112294872 -169898792 - LTR8 LTR ERV1 -128 563 11 1996 142 3 0 chr1 112295403 112295699 -169897965 + AluSg SINE Alu 6 302 -8 1325 164 42 98 chr1 112295906 112296357 -169897307 - Charlie1b DNA MER1_type 0 523 98 272 271 59 25 chr1 112296419 112296537 -169897127 - MIR SINE MIR -107 155 34 289 294 43 90 chr1 112296749 112296902 -169896762 + L2 LINE L2 2539 2681 -633 2264 102 7 0 chr1 112296902 112297195 -169896469 - AluSx SINE Alu -17 295 1 289 294 43 90 chr1 112297195 112297252 -169896412 + L2 LINE L2 2681 2739 -575 703 203 26 7 chr1 112297317 112297470 -169896194 - LTR32 LTR ERVL 0 471 316 273 143 0 0 chr1 112297466 112297508 -169896156 - LTR32 LTR ERVL -411 60 19 * 209 246 108 15 chr1 112297515 112297580 -169896084 + MIR SINE MIR 179 249 -13 249 245 50 65 chr1 112298346 112298485 -169895179 - MER65A LTR ERV1 -308 137 1 2265 106 3 0 chr1 112298630 112298931 -169894733 + AluSx SINE Alu 1 302 -10 339 292 35 0 chr1 112298943 112299056 -169894608 - MER20 DNA MER1_type -40 179 63 188 294 28 73 chr1 112299338 112299447 -169894217 + MIR3 SINE MIR 89 192 -16 569 200 192 8 chr1 112299496 112299626 -169894038 + FRAM SINE Alu 3 156 -10 292 211 0 18 chr1 112299641 112299698 -169893966 - L2 LINE L2 -7 3306 3251 928 174 26 20 chr1 112300102 112300297 -169893367 + MLT1D LTR MaLR 1 196 -309 2251 99 3 0 chr1 112300344 112300648 -169893016 + AluSp SINE Alu 1 305 -8 585 247 16 37 chr1 112300649 112300839 -169892825 + MLT1D LTR MaLR 313 498 -7 2238 176 105 4 chr1 112300998 112301493 -169892171 + L1MB3 LINE L1 5639 6183 0 327 187 137 65 chr1 112301493 112301632 -169892032 - MER112 DNA MER1_type -50 210 62 524 245 138 8 chr1 112301762 112301955 -169891709 + MIR SINE MIR 13 225 -37 424 311 80 13 chr1 112302481 112302632 -169891032 + MIR SINE MIR 20 180 -82 334 322 55 0 chr1 112302748 112302894 -169890770 - MER117 DNA MER1_type -10 187 34 2279 103 0 3 chr1 112303725 112304058 -169889606 - AluSq SINE Alu 0 332 1 180 316 105 0 chr1 112304216 112304273 -169889391 - L2 LINE L2 -74 3198 3136 34 55 0 0 chr1 112304943 112304998 -169888666 + AT_rich Low_complexity Low_complexity 1 55 0 2084 141 6 10 chr1 112305068 112305381 -169888283 - AluJb SINE Alu 0 312 1 1561 213 33 22 chr1 112306147 112306514 -169887150 + MLT1A2 LTR MaLR 4 374 0 546 393 51 11 chr1 112306575 112306947 -169886717 + L2 LINE L2 2579 2965 -349 238 28 0 0 chr1 112307516 112307552 -169886112 - L1PA3 LINE L1 -3 6152 6117 940 144 7 14 chr1 112308066 112308212 -169885452 - AluJo SINE Alu -16 296 152 676 196 23 146 chr1 112308225 112308567 -169885097 - MER51C LTR ERV1 0 640 341 919 148 7 20 chr1 112308846 112308995 -169884669 - AluJo SINE Alu -165 147 1 293 379 38 25 chr1 112309276 112309516 -169884148 + L2 LINE L2 2870 3112 -160 25 31 0 0 chr1 112309578 112309610 -169884054 + AT_rich Low_complexity Low_complexity 1 32 0 797 154 8 0 chr1 112309610 112309727 -169883937 - FLAM_C SINE Alu -15 118 1 266 184 61 0 chr1 112309788 112309837 -169883827 + L2 LINE L2 3221 3272 0 1459 163 62 29 chr1 112309991 112310267 -169883397 + AluJo SINE Alu 5 289 -23 2033 134 7 19 chr1 112310565 112310872 -169882792 - AluJo SINE Alu -9 303 1 831 127 0 89 chr1 112311423 112311581 -169882083 - U4 snRNA snRNA -1 144 1 222 118 0 0 chr1 112311601 112311635 -169882029 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1832 178 3 0 chr1 112311820 112312113 -169881551 - AluJb SINE Alu -18 294 1 1897 125 31 7 chr1 112312901 112313189 -169880475 + AluSx SINE Alu 1 295 -17 653 263 50 0 chr1 112313329 112313508 -169880156 + MER5A DNA MER1_type 1 188 -1 496 252 36 7 chr1 112313629 112313768 -169879896 - MER5A DNA MER1_type -43 146 4 990 267 111 56 chr1 112313802 112314014 -169879650 + L2 LINE L2 1966 2165 -1149 1952 154 3 10 chr1 112314014 112314326 -169879338 - AluJb SINE Alu -2 310 1 990 267 111 56 chr1 112314326 112314664 -169879000 + L2 LINE L2 2165 2546 -768 1136 181 0 37 chr1 112314665 112314880 -169878784 + AluJb SINE Alu 1 207 -105 1059 160 20 40 chr1 112314880 112315080 -169878584 + AluJb SINE Alu 87 282 -30 773 275 107 43 chr1 112315230 112315629 -169878035 + L2 LINE L2 2622 3084 -229 1372 208 42 50 chr1 112315629 112316029 -169877635 - MLT2C1 LTR ERVL 0 397 1 773 275 107 43 chr1 112316029 112316186 -169877478 + L2 LINE L2 3084 3230 -83 2219 210 66 12 chr1 112316390 112316576 -169877088 - L1ME1 LINE L1 -6 6160 5986 1766 169 2 102 chr1 112316576 112317009 -169876655 - MLT1B LTR MaLR 0 390 1 2219 210 66 12 chr1 112317009 112317426 -169876238 - L1ME1 LINE L1 -180 5986 5524 424 300 36 63 chr1 112317642 112317865 -169875799 - HAL1 LINE L1 -25 2482 2266 249 33 0 0 chr1 112317963 112317993 -169875671 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 1734 168 42 0 chr1 112318038 112318323 -169875341 - AluJb SINE Alu -15 297 1 640 66 110 0 chr1 112318403 112318494 -169875170 + HY3 scRNA scRNA 1 101 0 248 164 0 45 chr1 112318494 112318555 -169875109 + A-rich Low_complexity Low_complexity 11 68 0 271 130 0 0 chr1 112318616 112318662 -169875002 - HAL1b LINE L1 -555 793 748 249 306 139 0 chr1 112319289 112319361 -169874303 + L2 LINE L2 3185 3266 -47 324 221 143 78 chr1 112319383 112319537 -169874127 + L2 LINE L2 1637 1800 -1514 2373 105 0 6 chr1 112319539 112319853 -169873811 + AluSx SINE Alu 1 312 0 1434 206 29 55 chr1 112319876 112320260 -169873404 - MLT1A2 LTR MaLR 0 374 1 280 158 73 85 chr1 112320260 112320296 -169873368 - MLT1E-int LTR MaLR 0 1735 1700 4403 186 20 52 chr1 112320296 112321297 -169872367 - LTR5 LTR ERVK 0 969 1 280 158 73 85 chr1 112321297 112321342 -169872322 - MLT1E-int LTR MaLR -35 1700 1655 * 32650 96 15 10 chr1 112321340 112322688 -169870976 - L1PA7 LINE L1 0 6154 4815 306 0 0 0 chr1 112322688 112322722 -169870942 + (TA)n Simple_repeat Simple_repeat 2 35 0 32650 96 15 10 chr1 112322722 112325488 -169868176 - L1PA7 LINE L1 -1339 4815 2014 2051 82 110 4 chr1 112325488 112325769 -169867895 - AluY SINE Alu 0 311 1 32650 96 15 10 chr1 112325769 112327785 -169865879 - L1PA7 LINE L1 -4140 2014 11 2901 213 65 71 chr1 112327796 112327878 -169865786 - MLT1E-int LTR MaLR -67 1668 1587 381 60 0 0 chr1 112327878 112327928 -169865736 - L1PA13 LINE L1 -3 6160 6111 2901 213 65 71 chr1 112327928 112329047 -169864617 - MLT1E-int LTR MaLR -148 1587 1 633 231 48 108 chr1 112329047 112329128 -169864536 - MLT2D LTR ERVL 0 414 330 2055 119 45 0 chr1 112329128 112329414 -169864250 + AluSx SINE Alu 1 299 -13 633 231 48 108 chr1 112329414 112329665 -169863999 - MLT2D LTR ERVL -84 330 102 1421 161 36 25 chr1 112329667 112329941 -169863723 + AluJb SINE Alu 1 277 -35 270 0 0 0 chr1 112329949 112329979 -169863685 + (CAA)n Simple_repeat Simple_repeat 2 31 0 301 149 0 0 chr1 112329984 112330031 -169863633 - MLT2D LTR ERVL -367 47 1 1172 303 93 43 chr1 112330035 112330636 -169863028 + L2 LINE L2 1802 2432 -882 248 371 20 41 chr1 112330636 112330833 -169862831 + L2 LINE L2 1945 2137 -1177 503 355 71 40 chr1 112330850 112331449 -169862215 + L2 LINE L2 2420 3036 -236 2021 143 21 47 chr1 112332363 112332748 -169860916 - THE1C LTR MaLR 0 375 1 2038 196 104 73 chr1 112333652 112333716 -169859948 - MLT1E LTR MaLR 0 593 532 2770 152 17 7 chr1 112333716 112334130 -169859534 - MER47B DNA MER2_type 0 418 1 2038 196 104 73 chr1 112334130 112334431 -169859233 - MLT1E LTR MaLR -61 532 201 5328 82 14 46 chr1 112334431 112335212 -169858452 + L1MA1 LINE L1 5547 6302 0 2038 196 104 73 chr1 112335212 112335420 -169858244 - MLT1E LTR MaLR -392 201 1 884 163 0 0 chr1 112336511 112336640 -169857024 - FLAM_C SINE Alu -3 130 2 1179 166 6 134 chr1 112336794 112337137 -169856527 - AluY SINE Alu -2 309 11 444 314 141 6 chr1 112337220 112337376 -169856288 - L2 LINE L2 -274 3039 2863 507 277 15 0 chr1 112337435 112337572 -169856092 - L2 LINE L2 -445 2869 2731 483 161 35 0 chr1 112337622 112337709 -169855955 - MER84 LTR ERVI -80 427 338 258 282 250 11 chr1 112337784 112337892 -169855772 - L2 LINE L2 -758 2556 2475 1997 138 34 86 chr1 112337892 112338277 -169855387 + MLT1A1 LTR MaLR 1 365 0 258 282 250 11 chr1 112338277 112338356 -169855308 - L2 LINE L2 -839 2475 2324 2362 62 10 7 chr1 112339309 112339601 -169854063 + AluY SINE Alu 1 293 -18 901 227 24 28 chr1 112339602 112339849 -169853815 + L2 LINE L2 1367 1612 -1702 908 230 181 71 chr1 112339849 112340270 -169853394 + LTR33 LTR ERVL 1 467 -54 2410 87 0 0 chr1 112340270 112340570 -169853094 + AluSc SINE Alu 2 301 -8 981 99 0 8 chr1 112340593 112340724 -169852940 + AluJb SINE Alu 1 130 -182 581 203 8 25 chr1 112340727 112340845 -169852819 + AluSg/x SINE Alu 185 300 -12 287 222 0 16 chr1 112340845 112340908 -169852756 + LTR33 LTR ERVL 460 521 0 737 218 30 15 chr1 112340908 112341105 -169852559 + L2 LINE L2 1608 1807 -1507 1972 272 81 3 chr1 112341138 112341716 -169851948 + L2 LINE L2 2353 2975 -339 326 244 23 0 chr1 112341720 112341806 -169851858 - MIR SINE MIR -78 184 97 392 265 73 75 chr1 112341880 112342012 -169851652 + HAL1 LINE L1 903 1034 -1473 2278 99 0 7 chr1 112342012 112342316 -169851348 - AluSc SINE Alu -7 302 1 392 265 73 75 chr1 112342316 112342620 -169851044 + HAL1 LINE L1 1034 1338 -1169 314 234 0 13 chr1 112342620 112342697 -169850967 + HAL1 LINE L1 1295 1370 -1137 344 250 25 25 chr1 112343709 112343829 -169849835 + HAL1 LINE L1 1800 1919 -588 307 220 68 25 chr1 112345442 112345560 -169848104 - Charlie2 DNA MER1_type -1 2861 2739 * 1842 201 42 53 chr1 112345558 112346037 -169847627 - Charlie2b DNA MER1_type -729 2133 1659 1876 172 0 0 chr1 112346037 112346339 -169847325 + AluJb SINE Alu 1 302 -10 1842 201 42 53 chr1 112346339 112346407 -169847257 - Charlie2b DNA MER1_type -1203 1659 1592 527 243 7 21 chr1 112346419 112346559 -169847105 - Charlie2b DNA MER1_type -1359 1423 1286 1573 201 13 16 chr1 112346593 112346906 -169846758 + AluJo SINE Alu 1 312 0 560 53 13 0 chr1 112346912 112346988 -169846676 + (GAAAA)n Simple_repeat Simple_repeat 4 80 0 1098 193 73 102 chr1 112347029 112347479 -169846185 - MER69 DNA AcHobo 0 2526 2090 911 264 94 44 chr1 112347652 112347974 -169845690 - Charlie2 DNA MER1_type -2268 594 246 2397 103 0 0 chr1 112347974 112348286 -169845378 + AluSx SINE Alu 1 312 0 911 264 94 44 chr1 112348286 112348369 -169845295 - Charlie2 DNA MER1_type -2616 246 169 399 261 121 25 chr1 112348467 112348666 -169844998 - L1M4 LINE L1 -3525 2621 2404 217 344 125 27 chr1 112348758 112348982 -169844682 + L2 LINE L2 2545 2790 -524 291 239 0 0 chr1 112349694 112349761 -169843903 + CT-rich Low_complexity Low_complexity 2 68 0 7642 52 5 8 chr1 112349761 112351267 -169842397 + SVA Other Other 1 1385 -1 1474 214 87 36 chr1 112351906 112352262 -169841402 + MLT1A2 LTR MaLR 1 374 0 1762 176 3 3 chr1 112352354 112352649 -169841015 + AluJb SINE Alu 1 295 -17 290 276 35 76 chr1 112353296 112353441 -169840223 - L2 LINE L2 -1192 2122 1984 1896 132 0 0 chr1 112353446 112353703 -169839961 + AluSc SINE Alu 1 257 -52 398 299 110 53 chr1 112353825 112354009 -169839655 - L2 LINE L2 -1242 2072 1900 1272 184 0 18 chr1 112354009 112354232 -169839432 + MER20 DNA MER1_type 1 219 0 398 299 110 53 chr1 112354232 112354402 -169839262 - L2 LINE L2 -1414 1900 1698 705 205 124 0 chr1 112356245 112356407 -169837257 - MER5A DNA MER1_type -1 188 4 1485 19 0 0 chr1 112357048 112357240 -169836424 + L1PA3 LINE L1 5986 6155 0 5920 152 33 25 chr1 112358028 112358157 -169835507 + L1PB1 LINE L1 4130 4256 -1895 2004 151 0 19 chr1 112358157 112358475 -169835189 + AluSx SINE Alu 1 312 0 5920 152 33 25 chr1 112358475 112358614 -169835050 + L1PB1 LINE L1 4256 4392 -1759 234 0 0 0 chr1 112358614 112358640 -169835024 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 5920 152 33 25 chr1 112358640 112359973 -169833691 + L1PB1 LINE L1 4392 5712 -439 2363 98 0 13 chr1 112359973 112360109 -169833555 + AluSx SINE Alu 1 137 -175 2580 55 0 0 chr1 112360109 112360418 -169833246 + AluY SINE Alu 1 309 -2 2363 98 0 13 chr1 112360418 112360597 -169833067 + AluSx SINE Alu 137 312 0 5920 152 33 25 chr1 112360597 112360616 -169833048 + L1PB1 LINE L1 5712 5729 -422 2398 90 3 0 chr1 112360616 112360917 -169832747 + AluSp SINE Alu 1 302 -11 5920 152 33 25 chr1 112360917 112360938 -169832726 + L1PB1 LINE L1 5729 5748 -403 312 91 0 0 chr1 112360938 112360982 -169832682 + (CA)n Simple_repeat Simple_repeat 2 45 0 5920 152 33 25 chr1 112360982 112361328 -169832336 + L1PB1 LINE L1 5748 6140 -11 219 36 0 0 chr1 112361328 112361356 -169832308 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 23 68 0 0 chr1 112361991 112362035 -169831629 + AT_rich Low_complexity Low_complexity 1 44 0 1735 128 0 4 chr1 112362090 112362340 -169831324 + AluSx SINE Alu 51 299 -13 5629 131 55 18 chr1 112362655 112363590 -169830074 - LTR5 LTR ERVK 0 969 1 2569 46 13 0 chr1 112364077 112364379 -169829285 + AluSp SINE Alu 1 306 -7 323 308 87 0 chr1 112364681 112364785 -169828879 - L2 LINE L2 -21 3292 3180 2394 95 0 9 chr1 112365107 112365422 -169828242 + AluSx SINE Alu 1 312 0 6161 182 70 16 chr1 112365428 112365767 -169827897 + L1MB3 LINE L1 3895 4214 -1969 342 0 0 0 chr1 112365767 112365805 -169827859 + (CA)n Simple_repeat Simple_repeat 1 38 0 6161 182 70 16 chr1 112365805 112367181 -169826483 + L1MB3 LINE L1 4214 5514 -669 2528 96 51 23 chr1 112367181 112367535 -169826129 + THE1B LTR MaLR 1 364 0 6161 182 70 16 chr1 112367535 112367655 -169826009 + L1MB3 LINE L1 5514 5626 -557 1671 168 6 52 chr1 112367655 112367982 -169825682 + AluJb SINE Alu 1 312 0 6161 182 70 16 chr1 112367982 112368158 -169825506 + L1MB3 LINE L1 5626 6018 -165 551 232 54 9 chr1 112368517 112368629 -169825035 + L2 LINE L2 3190 3306 -7 544 205 211 7 chr1 112370215 112370384 -169823280 + MIR SINE MIR 58 260 -2 244 227 41 113 chr1 112370833 112370930 -169822734 - HAL1 LINE L1 -551 1956 1867 22 0 0 0 chr1 112370945 112370967 -169822697 + AT_rich Low_complexity Low_complexity 1 22 0 1212 277 74 56 chr1 112370977 112371362 -169822302 + MLT1J LTR MaLR 1 399 -112 1957 126 0 30 chr1 112371362 112371663 -169822001 - AluSx SINE Alu -19 293 2 1212 277 74 56 chr1 112371663 112371779 -169821885 + MLT1J LTR MaLR 399 511 0 3661 129 2 4 chr1 112371884 112372396 -169821268 - MER9 LTR ERVK 0 511 1 202 373 38 25 chr1 112372961 112373119 -169820545 - MIR SINE MIR -15 247 88 614 200 173 38 chr1 112374287 112374472 -169819192 - MIR SINE MIR -8 254 45 344 206 135 32 chr1 112374520 112374646 -169819018 + MER112 DNA MER1_type 1 139 -121 662 150 83 8 chr1 112374648 112374781 -169818883 + AluJb SINE Alu 160 302 -10 304 161 99 0 chr1 112374786 112374867 -169818797 + Charlie5 DNA MER1_type 2416 2504 -108 1300 122 11 0 chr1 112374872 112375060 -169818604 - AluSg/x SINE Alu 0 312 123 403 113 28 0 chr1 112375067 112375138 -169818526 + Charlie5 DNA MER1_type 2551 2623 0 1391 209 114 80 chr1 112375138 112375976 -169817688 + L2 LINE L2 2428 3294 -19 254 235 141 12 chr1 112379083 112379168 -169814496 + MIR SINE MIR 34 129 -133 1791 177 3 19 chr1 112379172 112379489 -169814175 - AluJo SINE Alu 0 312 1 321 277 138 47 chr1 112379611 112379864 -169813800 + L2 LINE L2 2207 2482 -832 205 291 0 18 chr1 112380237 112380292 -169813372 + L2 LINE L2 3007 3060 -212 1769 172 3 7 chr1 112380424 112380720 -169812944 + AluJo SINE Alu 5 299 -13 2252 112 0 13 chr1 112380721 112381034 -169812630 + AluSq SINE Alu 1 309 -4 2481 50 0 7 chr1 112381294 112381591 -169812073 + AluY SINE Alu 1 295 -16 2294 105 0 0 chr1 112381731 112382035 -169811629 + AluSx SINE Alu 1 304 -8 2260 111 0 0 chr1 112382331 112382628 -169811036 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr1 112382689 112382728 -169810936 + AT_rich Low_complexity Low_complexity 1 39 0 666 118 0 0 chr1 112383105 112383207 -169810457 + (TCCC)n Simple_repeat Simple_repeat 3 104 0 11173 55 4 26 chr1 112383212 112384650 -169809014 - SVA Other Other 0 1386 2 209 56 0 56 chr1 112384654 112384690 -169808974 + (AGGGGG)n Simple_repeat Simple_repeat 3 36 0 479 281 146 16 chr1 112384758 112384950 -169808714 + Charlie7 DNA MER1_type 140 356 -2256 * 600 171 277 50 chr1 112384946 112385203 -169808461 + Charlie7 DNA MER1_type 1471 1817 -795 773 240 82 5 chr1 112385203 112385411 -169808253 - MER58A DNA MER1_type 0 224 1 600 171 277 50 chr1 112385411 112385474 -169808190 + Charlie7 DNA MER1_type 1817 1864 -748 721 173 81 32 chr1 112385477 112385760 -169807904 + Charlie7 DNA MER1_type 2240 2536 -76 1938 127 28 0 chr1 112386383 112386666 -169806998 - AluSx SINE Alu -21 291 1 695 238 75 23 chr1 112386666 112386931 -169806733 - L1ME4a LINE L1 -281 5840 5562 31 0 0 0 chr1 112387079 112387110 -169806554 + AT_rich Low_complexity Low_complexity 1 31 0 766 257 45 5 chr1 112387538 112387740 -169805924 - MER63A DNA MER1_type 0 210 1 2216 112 147 5 chr1 112389328 112389702 -169803962 - MSTA LTR MaLR 0 428 2 2137 115 17 0 chr1 112389775 112390062 -169803602 - AluSg SINE Alu -18 292 1 290 221 15 0 chr1 112390062 112390130 -169803534 + MER116 DNA Mariner 12 80 0 183 268 18 36 chr1 112390238 112390294 -169803370 - L2 LINE L2 -2 3270 3216 1889 71 17 4 chr1 112390334 112390573 -169803091 - AluY SINE Alu -69 242 1 409 92 62 0 chr1 112390573 112390638 -169803026 - Alu SINE Alu -10 302 234 843 160 0 8 chr1 112390638 112390763 -169802901 - AluJo/FLAM SINE Alu -185 127 4 251 292 99 61 chr1 112390965 112391109 -169802555 - MIR SINE MIR -67 141 16 1439 212 15 0 chr1 112391711 112391970 -169801694 + Tigger7 DNA MER2_type 1 263 -287 502 200 11 11 chr1 112391988 112392083 -169801581 + Tigger7 DNA MER2_type 2392 2486 -1 734 175 0 29 chr1 112392811 112392948 -169800716 + FLAM_A SINE Alu 1 133 0 803 307 129 9 chr1 112393051 112393507 -169800157 - MLT1J LTR MaLR 0 511 1 2473 90 0 0 chr1 112393645 112393956 -169799708 - AluSp SINE Alu -2 311 1 1415 284 38 59 chr1 112393986 112394379 -169799285 + L1M4b LINE L1 4 385 -6474 1734 117 110 11 chr1 112394379 112394661 -169799003 - AluSg SINE Alu 0 310 1 1415 284 38 59 chr1 112394661 112394792 -169798872 + L1M4b LINE L1 385 517 -6342 813 191 138 0 chr1 112394792 112394980 -169798684 - L1M4b LINE L1 -6635 224 11 2229 109 0 0 chr1 112395170 112395464 -169798200 + AluSx SINE Alu 4 297 -15 900 183 6 24 chr1 112395467 112395631 -169798033 + AluJo/FRAM SINE Alu 131 291 -21 1769 180 3 3 chr1 112395663 112395963 -169797701 - AluJb SINE Alu -12 300 1 566 263 103 22 chr1 112396299 112396531 -169797133 + MIR SINE MIR 2 252 -10 436 191 143 9 chr1 112396679 112396784 -169796880 - FLAM_C SINE Alu -24 119 1 41 72 0 0 chr1 112398764 112398847 -169794817 + AT_rich Low_complexity Low_complexity 1 83 0 365 252 131 9 chr1 112399016 112399123 -169794541 - L2 LINE L2 0 3272 3153 232 259 130 19 chr1 112399193 112399301 -169794363 - L1ME LINE L1 -469 5652 5533 393 284 80 13 chr1 112399306 112399365 -169794299 - L1ME LINE L1 -693 5428 5374 2435 81 0 0 chr1 112399365 112399660 -169794004 - AluSc SINE Alu -14 295 1 393 284 80 13 chr1 112399660 112399786 -169793878 - L1ME LINE L1 -747 5374 5293 2251 119 3 0 chr1 112400264 112400566 -169793098 - AluSp SINE Alu -9 304 2 241 83 0 28 chr1 112400645 112400681 -169792983 - tRNA-Val-GTG tRNA tRNA -39 37 3 30 0 0 24 chr1 112401088 112401104 -169792560 + AT_rich Low_complexity Low_complexity 1 16 -24 546 70 0 0 chr1 112401104 112401175 -169792489 + L1PA5 LINE L1 6075 6145 -9 30 0 0 24 chr1 112401175 112401199 -169792465 + AT_rich Low_complexity Low_complexity 16 40 0 2192 117 0 0 chr1 112402708 112403006 -169790658 - AluSx SINE Alu -14 298 1 21 57 0 0 chr1 112403015 112403050 -169790614 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 112403262 112403284 -169790380 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 112404297 112404324 -169789340 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 112404873 112404894 -169788770 + AT_rich Low_complexity Low_complexity 1 21 0 1128 110 0 0 chr1 112405038 112405184 -169788480 + AluSc SINE Alu 143 288 -21 29 0 0 0 chr1 112405184 112405213 -169788451 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr1 112405254 112405285 -169788379 + AT_rich Low_complexity Low_complexity 1 31 0 2040 112 11 0 chr1 112406138 112406450 -169787214 + AluSp SINE Alu 3 317 0 249 135 95 14 chr1 112408552 112408626 -169785038 + (TTATA)n Simple_repeat Simple_repeat 1 80 0 1673 185 6 19 chr1 112408682 112408996 -169784668 + AluJb SINE Alu 1 310 -2 254 279 25 0 chr1 112409147 112409226 -169784438 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 650 328 75 9 chr1 112410149 112410481 -169783183 + L1ME3A LINE L1 5619 5972 -198 278 130 94 5 chr1 112411628 112411684 -169781980 + MER5A DNA MER1_type 4 61 -128 225 216 20 0 chr1 112411736 112411787 -169781877 + (CATA)n Simple_repeat Simple_repeat 3 54 0 238 239 28 0 chr1 112411787 112411858 -169781806 - L1MC4 LINE L1 -120 7922 7850 374 248 99 25 chr1 112411858 112412019 -169781645 - L1ME4a LINE L1 -296 5825 5653 422 303 222 11 chr1 112412043 112412228 -169781436 + MIR SINE MIR 20 243 -19 3757 103 19 8 chr1 112412289 112412803 -169780861 + MER1A DNA MER1_type 2 521 -8 294 250 125 0 chr1 112412816 112412936 -169780728 - L1ME4a LINE L1 -513 5608 5474 368 292 257 5 chr1 112412937 112413026 -169780638 + MIR SINE MIR 10 75 -187 1811 154 0 30 chr1 112413026 112413331 -169780333 + AluJo SINE Alu 1 296 -16 368 292 257 5 chr1 112413331 112413443 -169780221 + MIR SINE MIR 75 262 0 189 363 133 7 chr1 112413711 112413846 -169779818 - MER5A DNA MER1_type -37 152 1 693 312 27 0 chr1 112415017 112415238 -169778426 + MIR SINE MIR 26 252 -10 461 287 201 14 chr1 112415827 112416036 -169777628 + MIR SINE MIR 7 254 -8 869 161 25 25 chr1 112416263 112416424 -169777240 + FRAM SINE Alu 1 160 -16 26 0 0 0 chr1 112416424 112416450 -169777214 + AT_rich Low_complexity Low_complexity 1 26 0 193 255 0 39 chr1 112417234 112417285 -169776379 + L2 LINE L2 3138 3186 -86 24 0 0 0 chr1 112417474 112417498 -169776166 + AT_rich Low_complexity Low_complexity 1 24 0 258 246 15 0 chr1 112420560 112420625 -169773039 - Charlie7 DNA MER1_type -2512 100 35 1967 125 7 21 chr1 112420745 112421034 -169772630 + AluJo SINE Alu 13 297 -15 279 322 62 40 chr1 112421616 112421793 -169771871 - L2 LINE L2 -5 3308 3128 1809 91 0 4 chr1 112421883 112422114 -169771550 - AluSq SINE Alu -18 295 66 25 0 0 0 chr1 112422431 112422456 -169771208 + AT_rich Low_complexity Low_complexity 1 25 0 1768 182 0 3 chr1 112422522 112422818 -169770846 + AluJb SINE Alu 1 295 -17 218 347 13 0 chr1 112423369 112423444 -169770220 - MIR3 SINE MIR -5 203 128 2233 95 0 19 chr1 112423628 112423944 -169769720 - AluSg SINE Alu 0 310 1 565 214 19 102 chr1 112424017 112424223 -169769441 + MER5A DNA MER1_type 1 189 0 306 301 249 5 chr1 112424517 112424726 -169768938 + MIR SINE MIR 2 261 -1 579 179 87 138 chr1 112424821 112424879 -169768785 + MER58C DNA MER1_type 28 87 -2333 2467 62 0 0 chr1 112424879 112425171 -169768493 - AluY SINE Alu -15 296 5 579 179 87 138 chr1 112425171 112425308 -169768356 + MER58C DNA MER1_type 87 213 -2 492 296 126 14 chr1 112425351 112425574 -169768090 - MLT1J2 LTR MaLR -1 449 202 628 145 103 0 chr1 112425794 112425911 -169767753 + FLAM_C SINE Alu 1 129 -4 270 362 60 17 chr1 112426096 112426212 -169767452 - MIR3 SINE MIR -85 123 3 513 115 0 0 chr1 112426336 112426414 -169767250 + (TC)n Simple_repeat Simple_repeat 1 78 0 2376 87 0 0 chr1 112426440 112426749 -169766915 - AluY SINE Alu -2 309 1 2154 132 7 0 chr1 112426749 112427059 -169766605 - AluSx SINE Alu 0 312 1 378 281 206 0 chr1 112427166 112427312 -169766352 - MIR3 SINE MIR -14 194 19 757 172 8 15 chr1 112428095 112428229 -169765435 + FLAM_A SINE Alu 1 133 0 27 49 0 0 chr1 112428828 112428869 -169764795 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr1 112428959 112428988 -169764676 + AT_rich Low_complexity Low_complexity 1 29 0 207 368 15 0 chr1 112429706 112429774 -169763890 - L2 LINE L2 -50 3222 3154 285 217 22 54 chr1 112429850 112429942 -169763722 - MIR SINE MIR -1 261 173 7115 36 33 0 chr1 112429967 112430834 -169762830 - L1PA5 LINE L1 -1 6153 5258 313 282 45 0 chr1 112430837 112430926 -169762738 - MIR SINE MIR -96 112 19 3509 180 50 28 chr1 112431159 112432001 -169761663 - L1MD2 LINE L1 -10 6349 5456 1244 131 15 15 chr1 112432044 112432202 -169761462 - AluSg/x SINE Alu -29 283 123 342 0 0 0 chr1 112432202 112432240 -169761424 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1244 131 15 15 chr1 112432240 112432280 -169761384 - AluSg/x SINE Alu -188 124 85 696 164 0 4 chr1 112432281 112432405 -169761259 - L1MD2 LINE L1 -730 5439 5314 1543 183 7 23 chr1 112432405 112432706 -169760958 - AluJo SINE Alu -12 300 5 696 164 0 4 chr1 112432706 112432732 -169760932 - L1MD2 LINE L1 -855 5314 5289 216 0 0 0 chr1 112432750 112432774 -169760890 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1613 114 60 60 chr1 112432785 112433101 -169760563 - L1MB4 LINE L1 0 6180 5865 328 194 0 0 chr1 112433132 112433199 -169760465 - L1MB4 LINE L1 -307 5877 5811 4595 170 35 7 chr1 112433205 112434089 -169759575 - L1MB2 LINE L1 -9 6162 5254 3019 193 28 67 chr1 112434103 112435374 -169758290 - L1MB4 LINE L1 -349 5835 4618 1460 260 40 124 chr1 112435386 112436687 -169756977 - L1MDb LINE L1 -5333 1207 39 596 318 67 12 chr1 112436820 112436925 -169756739 - L1ME3A LINE L1 -214 5956 5858 1295 145 56 0 chr1 112436925 112437139 -169756525 - L1PB4 LINE L1 -1 6155 5930 596 318 67 12 chr1 112437139 112437376 -169756288 - L1ME3A LINE L1 -312 5858 5595 45 62 0 0 chr1 112437444 112437524 -169756140 + AT_rich Low_complexity Low_complexity 1 80 0 276 218 0 0 chr1 112438168 112438223 -169755441 - L1PB4 LINE L1 -78 6078 6024 1854 163 3 10 chr1 112438277 112438572 -169755092 - AluSx SINE Alu -19 293 1 812 143 0 60 chr1 112438624 112438757 -169754907 + FLAM_C SINE Alu 3 127 -16 1140 142 36 71 chr1 112439657 112439770 -169753894 - MER33 DNA MER1_type -2262 323 208 1676 188 10 3 chr1 112439770 112440063 -169753601 + AluJb SINE Alu 1 295 -17 1140 142 36 71 chr1 112440063 112440230 -169753434 - MER33 DNA MER1_type -2377 208 53 462 186 144 0 chr1 112440845 112440942 -169752722 + AluJ SINE Alu 1 111 -201 180 0 0 0 chr1 112440954 112440974 -169752690 + (GAAAA)n Simple_repeat Simple_repeat 1 20 0 1843 154 3 11 chr1 112441626 112441912 -169751752 + AluJo SINE Alu 3 286 -26 1062 179 0 43 chr1 112442396 112442603 -169751061 + AluJo SINE Alu 88 285 -27 231 36 0 0 chr1 112442603 112442631 -169751033 + (CA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr1 112442781 112442806 -169750858 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr1 112442856 112442903 -169750761 + AT_rich Low_complexity Low_complexity 1 47 0 2225 240 85 18 chr1 112444190 112445028 -169748636 - L1MEc LINE L1 -3938 2458 1565 591 186 190 21 chr1 112445069 112445311 -169748353 - L1MEc LINE L1 -5298 1098 816 840 137 0 22 chr1 112445312 112445451 -169748213 - FLAM_C SINE Alu -7 136 1 2872 240 58 11 chr1 112445454 112446207 -169747457 - L1MEc LINE L1 -5572 824 36 1247 235 125 5 chr1 112446203 112446578 -169747086 - L1MC4 LINE L1 -1130 6912 6493 * 831 192 92 79 chr1 112446969 112447198 -169746466 - MLT1C LTR MaLR -2 465 234 748 177 8 0 chr1 112447196 112447326 -169746338 - MLT1C LTR MaLR -336 131 1 * 479 267 87 12 chr1 112447725 112447886 -169745778 + MIR SINE MIR 90 262 0 22 0 0 0 chr1 112448934 112448956 -169744708 + AT_rich Low_complexity Low_complexity 1 22 0 505 159 8 136 chr1 112450869 112451001 -169742663 - AluJb SINE Alu -161 151 37 38 0 0 0 chr1 112451212 112451250 -169742414 + AT_rich Low_complexity Low_complexity 1 38 0 1189 216 48 34 chr1 112451742 112452034 -169741630 - AluJb SINE Alu -2 300 5 630 116 16 78 chr1 112452036 112452165 -169741499 - AluJo SINE Alu -175 137 17 194 213 115 33 chr1 112452812 112452873 -169740791 - L2 LINE L2 -4 3309 3244 1795 164 7 3 chr1 112454177 112454464 -169739200 - AluJo SINE Alu -24 288 1 674 177 7 71 chr1 112454885 112455026 -169738638 - FLAM_A SINE Alu -1 132 1 1922 154 0 7 chr1 112455271 112455569 -169738095 + AluJo SINE Alu 3 298 -14 1477 180 19 4 chr1 112455602 112455858 -169737806 + AluJb SINE Alu 43 302 -10 1943 168 3 0 chr1 112455860 112456158 -169737506 + AluSx SINE Alu 3 301 -11 1561 213 58 28 chr1 112456619 112457018 -169736646 + MER110 LTR ERV1 65 475 -16 2237 123 3 0 chr1 112458039 112458341 -169735323 - AluSp SINE Alu -9 304 2 241 83 0 28 chr1 112458420 112458456 -169735208 - tRNA-Val-GTG tRNA tRNA -39 37 3 29 0 0 25 chr1 112458863 112458878 -169734786 + AT_rich Low_complexity Low_complexity 1 15 -24 546 70 0 0 chr1 112458878 112458949 -169734715 + L1PA5 LINE L1 6075 6145 -9 29 0 0 25 chr1 112458949 112458973 -169734691 + AT_rich Low_complexity Low_complexity 15 39 0 2246 111 0 0 chr1 112460485 112460783 -169732881 - AluSx SINE Alu -14 298 1 21 57 0 0 chr1 112460792 112460827 -169732837 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 112461039 112461061 -169732603 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 112462074 112462101 -169731563 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 112462650 112462671 -169730993 + AT_rich Low_complexity Low_complexity 1 21 0 1141 103 0 0 chr1 112462815 112462961 -169730703 + AluSc SINE Alu 143 288 -21 29 0 0 0 chr1 112462961 112462990 -169730674 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr1 112463031 112463062 -169730602 + AT_rich Low_complexity Low_complexity 1 31 0 2144 107 0 10 chr1 112463922 112464221 -169729443 + AluSx SINE Alu 10 305 -7 474 243 83 90 chr1 112464221 112464666 -169728998 - MER31-int LTR ERV1 -2395 2541 2100 1214 188 5 9 chr1 112464676 112464889 -169728775 - AluJb SINE Alu -10 302 91 785 209 77 70 chr1 112464889 112465282 -169728382 - MER31-int LTR ERV1 -2889 2047 1591 392 157 72 124 chr1 112465298 112465451 -169728213 - LTR57-int LTR ERVL -3832 1511 1367 304 81 0 97 chr1 112465420 112465482 -169728182 - MER31-int LTR ERV1 -3276 1660 1605 * 1295 174 9 0 chr1 112465491 112465715 -169727949 + AluJo SINE Alu 82 307 -5 423 151 40 79 chr1 112465715 112465841 -169727823 - MER31-int LTR ERV1 -3344 1592 1472 383 180 16 11 chr1 112465841 112465924 -169727740 + AluJ/FLAM SINE Alu 1 60 -242 2766 130 99 21 chr1 112465994 112466089 -169727575 + LTR45 LTR ERV1 3 89 -436 4282 70 48 3 chr1 112466089 112466671 -169726993 + LTR14B LTR ERVK 1 608 0 2766 130 99 21 chr1 112466671 112467060 -169726604 + LTR45 LTR ERV1 89 525 0 939 286 25 48 chr1 112467179 112467535 -169726129 - MLT1E3 LTR MaLR -124 500 153 664 200 0 0 chr1 112467538 112467694 -169725970 - FLAM_A SINE Alu 0 156 1 258 167 19 0 chr1 112467728 112467782 -169725882 - MLT1E3 LTR MaLR -465 159 105 2042 229 30 39 chr1 112467791 112468350 -169725314 - MER92C LTR ERV1 0 554 1 2277 96 6 3 chr1 112468801 112469113 -169724551 + AluSp SINE Alu 1 313 0 438 243 0 0 chr1 112469259 112469366 -169724298 - MER31-int LTR ERV1 -466 4470 4364 319 202 218 24 chr1 112469462 112469586 -169724078 - LTR37A LTR ERV1 -218 208 61 3112 231 50 77 chr1 112469598 112470242 -169723422 - MER31-int LTR ERV1 -616 4320 3721 2033 141 3 0 chr1 112470242 112470532 -169723132 + AluSx SINE Alu 4 294 -18 3112 231 50 77 chr1 112470532 112471050 -169722614 - MER31-int LTR ERV1 -1215 3721 3190 186 133 0 0 chr1 112471061 112471091 -169722573 + (TTCCC)n Simple_repeat Simple_repeat 4 33 0 1891 139 0 4 chr1 112471097 112471377 -169722287 - AluJb SINE Alu -33 279 1 195 329 61 0 chr1 112471740 112471822 -169721842 + MER5B DNA MER1_type 92 178 0 1424 202 57 109 chr1 112471957 112472380 -169721284 - MER31-int LTR ERV1 -1867 3069 2626 1700 179 7 7 chr1 112472380 112472676 -169720988 + AluJo SINE Alu 5 300 -12 2061 107 0 31 chr1 112472678 112473005 -169720659 + AluSc SINE Alu 1 318 0 1424 202 57 109 chr1 112473005 112473210 -169720454 - MER31-int LTR ERV1 -2311 2625 2470 3789 127 11 35 chr1 112473211 112473705 -169719959 + LTR39 LTR ERV1 1 478 -305 2057 135 29 52 chr1 112473705 112473934 -169719730 - THE1C LTR MaLR 0 375 157 1967 143 0 13 chr1 112473934 112474235 -169719429 + AluSp SINE Alu 1 297 -16 2057 135 29 52 chr1 112474235 112474389 -169719275 - THE1C LTR MaLR -218 157 1 3789 127 11 35 chr1 112474389 112474523 -169719141 + LTR39 LTR ERV1 478 614 -169 352 239 18 26 chr1 112475061 112475174 -169718490 - L1ME3A LINE L1 -298 5872 5761 868 101 7 65 chr1 112475247 112475386 -169718278 - FLAM_C SINE Alu -2 131 1 818 136 0 0 chr1 112475590 112475700 -169717964 + FLAM_C SINE Alu 11 120 -23 467 309 39 18 chr1 112475706 112475991 -169717673 + L1ME LINE L1 795 1085 -4985 645 223 80 66 chr1 112476078 112476379 -169717285 - L1MC4 LINE L1 -232 7810 7506 * 1002 215 16 20 chr1 112476370 112476621 -169717043 + L1MB8 LINE L1 5920 6169 -9 2383 72 0 0 chr1 112476623 112476916 -169716748 - AluY SINE Alu -18 293 1 2205 68 50 0 chr1 112476918 112477199 -169716465 - AluY SINE Alu -16 295 1 688 194 77 31 chr1 112477223 112477419 -169716245 + HAL1 LINE L1 937 1141 -1366 1463 245 73 60 chr1 112477424 112478122 -169715542 + HAL1 LINE L1 1801 2507 0 1912 148 0 3 chr1 112478128 112478439 -169715225 + AluSx SINE Alu 1 310 0 303 326 22 0 chr1 112478958 112479050 -169714614 + MER5B DNA MER1_type 85 178 0 1643 186 11 0 chr1 112479515 112479794 -169713870 + AluJo SINE Alu 1 282 -30 832 207 121 6 chr1 112479818 112479992 -169713672 + MER20 DNA MER1_type 26 219 0 2848 182 43 56 chr1 112480368 112481012 -169712652 + LTR27 LTR ERV1 1 636 0 687 71 12 0 chr1 112481304 112481388 -169712276 + AluSp/q SINE Alu 204 288 -25 1923 168 0 31 chr1 112481459 112481781 -169711883 - AluJo SINE Alu 0 312 1 871 225 168 63 chr1 112482015 112482551 -169711113 - LTR48B LTR ERV1 -10 634 1 389 145 0 0 chr1 112482864 112482926 -169710738 + MER34C LTR ERV1 35 96 -489 4366 188 82 84 chr1 112482930 112483243 -169710421 - MER31-int LTR ERV1 -782 4154 3842 2115 118 21 0 chr1 112483243 112483532 -169710132 - AluSg SINE Alu -15 295 1 4366 188 82 84 chr1 112483532 112483842 -169709822 - MER31-int LTR ERV1 -1094 3842 3533 1695 173 27 3 chr1 112483842 112484137 -169709527 + AluJb SINE Alu 1 302 -10 4366 188 82 84 chr1 112484137 112484255 -169709409 - MER31-int LTR ERV1 -1403 3533 3416 1902 138 7 3 chr1 112484255 112484537 -169709127 - AluSx SINE Alu -29 283 1 4366 188 82 84 chr1 112484537 112485087 -169708577 - MER31-int LTR ERV1 -1520 3416 2864 1236 186 0 5 chr1 112485087 112485297 -169708367 + AluJo SINE Alu 84 292 -20 848 167 0 0 chr1 112485298 112485424 -169708240 + FLAM_C SINE Alu 1 126 -17 570 148 87 54 chr1 112485465 112485614 -169708050 - MER31-int LTR ERV1 -2068 2868 2715 2030 122 3 7 chr1 112485781 112486076 -169707588 - AluSx SINE Alu -18 294 1 1575 221 99 103 chr1 112486076 112486672 -169706992 - MER31-int LTR ERV1 -2477 2459 1862 2052 130 34 34 chr1 112486672 112486838 -169706826 + L1PA16 LINE L1 5805 5970 -196 2353 99 3 0 chr1 112486838 112487142 -169706522 + AluSg SINE Alu 1 305 -5 2052 130 34 34 chr1 112487142 112487328 -169706336 + L1PA16 LINE L1 5969 6157 -9 288 0 0 0 chr1 112487329 112487361 -169706303 + (TA)n Simple_repeat Simple_repeat 1 32 0 1575 221 99 103 chr1 112487361 112487418 -169706246 - MER31-int LTR ERV1 -3074 1862 1806 2332 100 3 3 chr1 112487418 112487729 -169705935 + AluSq SINE Alu 1 311 -2 1575 221 99 103 chr1 112487729 112488352 -169705312 - MER31-int LTR ERV1 -3130 1806 1183 2096 177 5 45 chr1 112488352 112488775 -169704889 + LTR27 LTR ERV1 3 408 -228 1755 130 27 0 chr1 112488776 112489038 -169704626 - AluSx SINE Alu -43 269 1 2171 212 38 14 chr1 112489038 112489563 -169704101 - L1ME1 LINE L1 -197 6229 5583 1574 191 3 7 chr1 112489563 112489882 -169703782 - AluJo SINE Alu 0 318 1 2171 212 38 14 chr1 112489882 112489906 -169703758 - L1ME1 LINE L1 -843 5583 5561 488 171 0 0 chr1 112489907 112489983 -169703681 - AluS SINE Alu -236 77 2 267 216 0 0 chr1 112489984 112490035 -169703629 - L1ME1 LINE L1 -1399 5007 4957 2212 95 0 0 chr1 112490040 112490346 -169703318 - AluSg SINE Alu 0 306 1 588 226 96 10 chr1 112490402 112490610 -169703054 - L1ME1 LINE L1 -4962 1444 1219 324 204 76 162 chr1 112490615 112490929 -169702735 - L1ME1 LINE L1 -5350 1059 773 932 241 139 49 chr1 112491009 112491307 -169702357 + LTR48B LTR ERV1 1 271 -373 1875 162 10 3 chr1 112491307 112491610 -169702054 - AluJb SINE Alu -7 305 1 932 241 139 49 chr1 112491610 112491864 -169701800 + LTR48B LTR ERV1 271 644 0 1884 169 44 49 chr1 112492063 112492380 -169701284 + MLT1A1 LTR MaLR 1 317 -48 2211 129 0 3 chr1 112492380 112492690 -169700974 + AluSq SINE Alu 1 309 -4 1884 169 44 49 chr1 112492690 112492739 -169700925 + MLT1A1 LTR MaLR 317 365 0 3978 60 87 10 chr1 112493087 112493605 -169700059 + LTR6B LTR ERV1 1 558 0 1749 176 17 0 chr1 112493677 112493973 -169699691 - AluJb SINE Alu -11 301 1 1062 137 5 63 chr1 112493980 112494069 -169699595 - LTR39 LTR ERV1 -184 599 525 4210 46 6 31 chr1 112494069 112494462 -169699202 + L1PA4 LINE L1 5645 6023 -132 2875 10 0 0 chr1 112494462 112494772 -169698892 - AluYa5 SINE Alu -1 310 1 4210 46 6 31 chr1 112494772 112494901 -169698763 + L1PA4 LINE L1 6023 6154 -1 1062 137 5 63 chr1 112494901 112495001 -169698663 - LTR39 LTR ERV1 -258 525 421 726 212 0 0 chr1 112495001 112495119 -169698545 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr1 112495119 112495140 -169698524 + AT_rich Low_complexity Low_complexity 1 21 0 365 143 18 0 chr1 112495141 112495197 -169698467 + L1MB4 LINE L1 5551 5607 -571 1758 187 0 0 chr1 112495224 112495518 -169698146 + AluJb SINE Alu 3 296 -16 829 179 0 0 chr1 112495563 112495680 -169697984 + FLAM_C SINE Alu 1 117 -16 1323 157 118 16 chr1 112495703 112495958 -169697706 - AluJb SINE Alu -19 293 13 33 0 0 0 chr1 112495972 112496005 -169697659 + AT_rich Low_complexity Low_complexity 1 33 0 1095 198 0 18 chr1 112496005 112496222 -169697442 + AluJo SINE Alu 82 294 -18 1867 168 10 39 chr1 112496223 112496298 -169697366 + L1MB4 LINE L1 5599 5675 -505 2103 133 0 0 chr1 112496298 112496618 -169697046 + AluSx SINE Alu 1 320 0 1867 168 10 39 chr1 112496618 112496928 -169696736 + L1MB4 LINE L1 5675 5974 -206 21 0 0 0 chr1 112497573 112497594 -169696070 + AT_rich Low_complexity Low_complexity 1 21 0 2088 119 63 92 chr1 112498297 112498535 -169695129 - LTR23 LTR ERV1 -5 432 211 396 0 0 0 chr1 112498535 112498579 -169695085 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2088 119 63 92 chr1 112498579 112498785 -169694879 - LTR23 LTR ERV1 -226 211 1 526 308 149 36 chr1 112498785 112499088 -169694576 - MLT1I LTR MaLR -57 352 15 278 321 38 8 chr1 112499219 112499350 -169694314 + ERVL LTR ERVL 1882 2016 -3748 525 133 71 0 chr1 112500298 112500396 -169693268 + MER53 DNA DNA 1 105 -84 432 145 250 8 chr1 112500314 112500438 -169693226 - MER53 DNA DNA -7 182 29 * 2484 70 0 10 chr1 112500438 112500752 -169692912 - AluSp SINE Alu -1 312 2 3197 101 77 70 chr1 112500950 112501021 -169692643 - LTR49 LTR ERV1 -19 576 507 1509 175 25 71 chr1 112501021 112501346 -169692318 + AluJb SINE Alu 1 310 -2 3197 101 77 70 chr1 112501346 112501750 -169691914 - LTR49 LTR ERV1 -88 507 94 1776 166 3 35 chr1 112501750 112502063 -169691601 - AluJo SINE Alu -9 303 1 3197 101 77 70 chr1 112502063 112502158 -169691506 - LTR49 LTR ERV1 -501 94 1 2528 142 9 61 chr1 112502158 112502330 -169691334 - Tigger1 DNA MER2_type -1987 431 251 3006 70 0 3 chr1 112502330 112502686 -169690978 - THE1A LTR MaLR 0 355 1 2528 142 9 61 chr1 112502686 112502965 -169690699 - Tigger1 DNA MER2_type -2167 251 4 381 290 83 83 chr1 112503892 112504240 -169689424 - L1M2 LINE L1 -5744 1105 758 183 333 0 0 chr1 112504507 112504567 -169689097 - L2 LINE L2 -2 3270 3211 189 313 78 75 chr1 112504931 112505212 -169688452 + L2 LINE L2 2513 2794 -520 24 0 0 0 chr1 112505212 112505236 -169688428 + AT_rich Low_complexity Low_complexity 1 24 0 2563 47 0 3 chr1 112505300 112505599 -169688065 - AluY SINE Alu -13 298 1 2351 86 6 10 chr1 112505880 112506193 -169687471 - AluSq SINE Alu -1 312 1 2227 105 3 13 chr1 112506324 112506628 -169687036 - AluSx SINE Alu -11 301 1 335 302 0 39 chr1 112506811 112506940 -169686724 - MIR SINE MIR -57 205 82 21 0 0 0 chr1 112507301 112507322 -169686342 + AT_rich Low_complexity Low_complexity 1 21 0 2396 90 0 0 chr1 112507727 112508026 -169685638 + AluSg SINE Alu 1 299 -11 514 250 120 11 chr1 112508265 112508449 -169685215 - MIR SINE MIR -49 213 10 711 182 0 0 chr1 112508496 112508606 -169685058 - FLAM_C SINE Alu -17 126 17 437 268 146 34 chr1 112508659 112508850 -169684814 + MIR SINE MIR 31 244 -18 1845 149 17 0 chr1 112508937 112509233 -169684431 - AluJb SINE Alu -11 301 1 22 0 0 0 chr1 112509304 112509326 -169684338 + AT_rich Low_complexity Low_complexity 1 22 0 217 332 88 34 chr1 112509633 112509770 -169683894 - L2 LINE L2 -444 2870 2717 1741 172 0 25 chr1 112509770 112510084 -169683580 + AluJb SINE Alu 1 306 -6 217 332 88 34 chr1 112510084 112510151 -169683513 - L2 LINE L2 -597 2717 2655 22 0 0 0 chr1 112510218 112510240 -169683424 + AT_rich Low_complexity Low_complexity 1 22 0 3098 156 19 16 chr1 112510467 112510980 -169682684 + L1PA15 LINE L1 5651 6165 0 284 196 0 0 chr1 112511176 112511227 -169682437 - AluJo SINE Alu -9 293 243 2086 88 0 62 chr1 112511228 112511534 -169682130 + AluSq SINE Alu 1 287 -26 279 133 0 0 chr1 112511534 112511579 -169682085 + (GGGA)n Simple_repeat Simple_repeat 2 46 0 1310 151 47 30 chr1 112511593 112511825 -169681839 - AluJo SINE Alu -76 236 1 1631 159 29 29 chr1 112512230 112512538 -169681126 + AluJo SINE Alu 1 308 -4 242 241 0 0 chr1 112512761 112512815 -169680849 - L2 LINE L2 -9 3304 3251 24 0 0 0 chr1 112512835 112512859 -169680805 + AT_rich Low_complexity Low_complexity 1 24 0 670 152 0 0 chr1 112512925 112513024 -169680640 + U6 snRNA snRNA 1 99 -8 663 207 7 14 chr1 112513091 112513231 -169680433 - MLT1D LTR MaLR -2 503 365 244 241 0 0 chr1 112513384 112513438 -169680226 + MIR SINE MIR 204 257 -5 1828 111 4 4 chr1 112513582 112513834 -169679830 + AluSx SINE Alu 31 282 -30 23 33 0 0 chr1 112513879 112513909 -169679755 + AT_rich Low_complexity Low_complexity 1 30 0 2180 131 0 3 chr1 112515258 112515571 -169678093 - AluSx SINE Alu 0 312 1 2234 97 17 3 chr1 112515791 112516091 -169677573 - AluSx SINE Alu -8 304 1 23 33 0 0 chr1 112516259 112516289 -169677375 + AT_rich Low_complexity Low_complexity 1 30 0 210 37 0 0 chr1 112516959 112516986 -169676678 + (TG)n Simple_repeat Simple_repeat 2 28 0 258 113 0 38 chr1 112516995 112517048 -169676616 + L1MA4 LINE L1 6001 6051 -249 2235 67 3 3 chr1 112517049 112517334 -169676330 + AluSg SINE Alu 1 285 -25 270 0 0 0 chr1 112517458 112517488 -169676176 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 919 146 52 109 chr1 112517490 112517553 -169676111 + L1MA4 LINE L1 6044 6109 -191 2243 80 10 3 chr1 112517553 112517842 -169675822 - AluSg SINE Alu -19 291 1 919 146 52 109 chr1 112517842 112518045 -169675619 + L1MA4 LINE L1 6109 6295 -5 22 0 0 0 chr1 112518086 112518108 -169675556 + AT_rich Low_complexity Low_complexity 1 22 0 5798 153 17 4 chr1 112518211 112519993 -169673671 - L1PB1 LINE L1 -195 5956 4150 1684 149 0 4 chr1 112520086 112520341 -169673323 - AluJb SINE Alu -13 299 46 210 37 0 0 chr1 112520491 112520518 -169673146 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1658 177 7 7 chr1 112520520 112520808 -169672856 - AluJb SINE Alu -24 288 1 381 320 28 39 chr1 112521026 112521207 -169672457 + MIR3 SINE MIR 25 203 -5 1614 242 45 80 chr1 112521897 112522501 -169671163 - L1ME1 LINE L1 0 6578 5993 408 176 0 59 chr1 112522538 112522691 -169670973 + C-rich Low_complexity Low_complexity 5 148 0 1596 150 32 4 chr1 112522697 112522950 -169670714 - AluJo SINE Alu -21 291 32 1290 211 61 65 chr1 112522961 112523191 -169670473 - L1ME1 LINE L1 -576 5984 5755 2115 127 0 0 chr1 112523191 112523504 -169670160 - AluSq SINE Alu 0 313 1 1290 211 61 65 chr1 112523504 112523682 -169669982 - L1ME1 LINE L1 -805 5755 5578 1783 173 30 0 chr1 112523682 112523977 -169669687 - AluJb SINE Alu -8 304 1 1290 211 61 65 chr1 112523977 112524214 -169669450 - L1ME1 LINE L1 -982 5578 5328 2211 110 7 0 chr1 112524214 112524515 -169669149 + AluSc SINE Alu 1 303 -6 1290 211 61 65 chr1 112524515 112524616 -169669048 - L1ME1 LINE L1 -1232 5328 5228 1908 158 23 19 chr1 112524647 112524999 -169668665 + MLT1A1 LTR MaLR 15 365 0 954 209 15 62 chr1 112524999 112525067 -169668597 - L1ME1 LINE L1 -1308 5232 5162 2319 81 3 3 chr1 112525067 112525364 -169668300 - AluSg SINE Alu -13 297 1 954 209 15 62 chr1 112525364 112525568 -169668096 - L1ME1 LINE L1 -1378 5162 4973 2212 108 0 0 chr1 112525680 112525967 -169667697 - AluSc SINE Alu -22 287 1 1250 239 25 18 chr1 112526001 112526395 -169667269 - L1ME1 LINE L1 -3516 3024 2628 422 139 51 0 chr1 112526446 112526525 -169667139 + L1MD2 LINE L1 6253 6335 -24 * 789 230 88 42 chr1 112526516 112526799 -169666865 - L1ME1 LINE L1 -5300 1243 940 870 275 16 49 chr1 112526993 112527298 -169666366 - L1ME1 LINE L1 -6212 328 34 325 205 26 0 chr1 112528047 112528125 -169665539 - L1MB8 LINE L1 -6 6172 6093 3687 146 35 99 chr1 112528146 112529002 -169664662 - L1MB4 LINE L1 -8 6172 5372 2177 123 0 0 chr1 112529002 112529373 -169664291 - AluSx SINE Alu 0 312 1 3687 146 35 99 chr1 112529373 112529395 -169664269 - L1MB4 LINE L1 -808 5372 5350 565 284 160 59 chr1 112529406 112529863 -169663801 - L2 LINE L2 -799 2515 2013 631 284 51 13 chr1 112530052 112530481 -169663183 + L1ME LINE L1 5055 5502 -664 22 0 0 0 chr1 112530495 112530517 -169663147 + AT_rich Low_complexity Low_complexity 1 22 0 712 164 0 9 chr1 112530523 112530639 -169663025 + FLAM_A SINE Alu 12 126 -16 238 264 83 0 chr1 112531092 112531164 -169662500 + MLT1J LTR MaLR 100 177 -334 432 51 0 0 chr1 112531319 112531378 -169662286 + (TA)n Simple_repeat Simple_repeat 1 59 0 201 39 0 0 chr1 112531479 112531505 -169662159 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1484 199 20 33 chr1 112532072 112532378 -169661286 - AluJo SINE Alu -10 302 1 540 202 0 10 chr1 112532506 112532605 -169661059 - Tigger1 DNA MER2_type -2319 99 2 302 221 103 22 chr1 112532607 112532747 -169660917 + MLT1L LTR MaLR 343 611 -3 246 260 14 0 chr1 112532901 112532974 -169660690 + (TA)n Simple_repeat Simple_repeat 2 75 0 192 372 0 26 chr1 112533070 112533148 -169660516 - MIR3 SINE MIR -47 161 86 10487 196 74 39 chr1 112533372 112534558 -169659106 - L1MA4A LINE L1 -5 7000 5857 751 123 0 0 chr1 112534558 112534664 -169659000 - U6 snRNA snRNA -1 106 1 10487 196 74 39 chr1 112534664 112536532 -169657132 - L1MA4A LINE L1 -1148 5857 4057 1636 186 17 0 chr1 112536532 112536833 -169656831 - AluJo SINE Alu -6 306 1 10487 196 74 39 chr1 112536833 112537053 -169656611 - L1MA4A LINE L1 -2948 4057 3846 2387 106 0 0 chr1 112537053 112537364 -169656300 + AluSq SINE Alu 1 311 -2 10487 196 74 39 chr1 112537364 112538225 -169655439 - L1MA4A LINE L1 -3159 3846 3017 1525 172 26 4 chr1 112538225 112538498 -169655166 - AluJb SINE Alu -13 299 21 10487 196 74 39 chr1 112538498 112538635 -169655029 - L1MA4A LINE L1 -3988 3017 2886 1538 158 3 94 chr1 112538635 112538976 -169654688 - AluJb SINE Alu -2 310 1 10487 196 74 39 chr1 112538976 112540680 -169652984 - L1MA4A LINE L1 -4119 2886 785 195 42 0 0 chr1 112540901 112540925 -169652739 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 24 0 0 0 chr1 112541583 112541607 -169652057 + AT_rich Low_complexity Low_complexity 1 24 0 601 169 68 34 chr1 112541607 112541725 -169651939 - FLAM_C SINE Alu -21 122 1 24 32 0 0 chr1 112541725 112541756 -169651908 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 19 chr1 112541849 112541875 -169651789 + AT_rich Low_complexity Low_complexity 1 26 -26 2200 108 7 3 chr1 112541875 112542170 -169651494 - AluSg SINE Alu -14 296 1 21 57 0 19 chr1 112542170 112542196 -169651468 + AT_rich Low_complexity Low_complexity 26 52 0 286 272 12 0 chr1 112542304 112542385 -169651279 - MER113 DNA MER1_type? -437 84 3 455 271 93 110 chr1 112542517 112542871 -169650793 + L2 LINE L2 2913 3260 -12 420 271 99 9 chr1 112542995 112543180 -169650484 - MIR SINE MIR -16 246 42 288 204 0 0 chr1 112543904 112543915 -169649749 + MER3 DNA MER1_type 37 47 -162 938 174 43 0 chr1 112543915 112544099 -169649565 - MER3 DNA MER1_type 0 209 18 1799 158 18 3 chr1 112544334 112544618 -169649046 + AluJb SINE Alu 5 292 -20 29 78 0 0 chr1 112545472 112545536 -169648128 + AT_rich Low_complexity Low_complexity 1 64 0 486 0 0 0 chr1 112545603 112545657 -169648007 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 2171 83 7 0 chr1 112545659 112545936 -169647728 - AluY SINE Alu -32 279 1 1205 84 0 7 chr1 112546001 112546156 -169647508 + AluSg/x SINE Alu 82 235 -77 414 286 151 22 chr1 112546440 112546811 -169646853 + L1ME4a LINE L1 5411 5829 -292 661 230 138 0 chr1 112546811 112546963 -169646701 + MIR SINE MIR 59 231 -31 237 232 72 0 chr1 112546982 112547051 -169646613 + L1MC/D LINE L1 5774 5847 -1961 599 179 34 17 chr1 112547120 112547237 -169646427 + FLAM_A SINE Alu 4 122 -11 206 149 21 0 chr1 112547237 112547252 -169646412 + (TA)n Simple_repeat Simple_repeat 1 14 -34 1671 192 0 11 chr1 112547252 112547539 -169646125 + AluJo SINE Alu 3 286 -26 206 149 21 0 chr1 112547539 112547570 -169646094 + (TA)n Simple_repeat Simple_repeat 14 48 0 230 216 20 0 chr1 112547590 112547641 -169646023 + (TA)n Simple_repeat Simple_repeat 1 52 0 1616 195 7 4 chr1 112548136 112548437 -169645227 - AluJo SINE Alu 0 306 5 2302 99 3 0 chr1 112548797 112549101 -169644563 + AluY SINE Alu 1 305 -6 2411 83 0 3 chr1 112549983 112550283 -169643381 - AluSc SINE Alu -10 299 1 2551 50 0 0 chr1 112550295 112550592 -169643072 - AluY SINE Alu -14 297 1 22 0 0 0 chr1 112550640 112550662 -169643002 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 112551572 112551595 -169642069 + AT_rich Low_complexity Low_complexity 1 23 0 35 54 0 0 chr1 112551830 112551886 -169641778 + AT_rich Low_complexity Low_complexity 1 56 0 231 204 375 0 chr1 112552336 112552424 -169641240 + L2 LINE L2 2017 2137 -1177 24 32 0 0 chr1 112552424 112552455 -169641209 + AT_rich Low_complexity Low_complexity 1 31 0 950 124 0 0 chr1 112552462 112552591 -169641073 - AluJo SINE Alu -25 287 159 543 196 0 0 chr1 112552596 112552693 -169640971 - AluJo SINE Alu -209 103 7 23 54 0 0 chr1 112552747 112552784 -169640880 + AT_rich Low_complexity Low_complexity 1 37 0 333 0 0 0 chr1 112553301 112553338 -169640326 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr1 112553556 112553576 -169640088 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 230 286 173 0 chr1 112553630 112553763 -169639901 + L2 LINE L2 2157 2312 -1002 261 273 87 118 chr1 112553856 112554017 -169639647 - L2 LINE L2 -2 3270 3115 382 293 150 14 chr1 112554135 112554282 -169639382 + L3 LINE CR1 1377 1543 -34 212 203 219 0 chr1 112554514 112554578 -169639086 - L2 LINE L2 -6 3307 3230 188 293 193 14 chr1 112554741 112554881 -169638783 - L2 LINE L2 -354 2960 2796 2058 93 0 4 chr1 112555033 112555303 -169638361 + AluSx SINE Alu 34 302 -10 1707 163 24 7 chr1 112555314 112555608 -169638056 + AluJb SINE Alu 1 299 -13 788 257 80 8 chr1 112555949 112556186 -169637478 + MIR SINE MIR 1 254 -8 25 0 0 0 chr1 112557184 112557209 -169636455 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr1 112557262 112557295 -169636369 + AT_rich Low_complexity Low_complexity 1 33 0 2314 96 0 3 chr1 112557646 112557947 -169635717 + AluSc SINE Alu 1 300 -9 2321 98 0 0 chr1 112558192 112558488 -169635176 + AluSg SINE Alu 3 298 -12 210 37 0 0 chr1 112558488 112558515 -169635149 + (CA)n Simple_repeat Simple_repeat 2 28 0 402 86 0 0 chr1 112558539 112558597 -169635067 - AluSc SINE Alu -2 297 240 391 275 27 14 chr1 112558736 112559036 -169634628 + GA-rich Low_complexity Low_complexity 1 304 0 507 194 0 135 chr1 112559177 112559310 -169634354 + MER34 LTR ERV1 1 136 -449 430 156 11 22 chr1 112559504 112559594 -169634070 - AluYb8 SINE Alu -112 206 118 26 0 0 0 chr1 112560131 112560157 -169633507 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr1 112561503 112561534 -169632130 + AT_rich Low_complexity Low_complexity 1 31 0 1583 176 30 23 chr1 112561962 112562263 -169631401 + AluJo SINE Alu 1 303 -9 2285 74 37 0 chr1 112562734 112563031 -169630633 - AluSx SINE Alu -4 308 1 1750 170 3 19 chr1 112563103 112563420 -169630244 - AluJb SINE Alu 0 312 1 1322 245 57 69 chr1 112563586 112564093 -169629571 - MER77 LTR ERV1 -6 599 99 2369 95 0 0 chr1 112564219 112564523 -169629141 - AluSx SINE Alu -8 304 1 1531 101 46 0 chr1 112565168 112565385 -169628279 - MER30 DNA MER1_type -1 229 3 395 252 64 43 chr1 112566143 112566275 -169627389 - L1MC4 LINE L1 -186 7856 7715 1268 149 47 30 chr1 112566275 112566510 -169627154 + MER8 DNA MER2_type 1 239 0 395 252 64 43 chr1 112566510 112566611 -169627053 - L1MC4 LINE L1 -327 7715 7618 1061 258 82 97 chr1 112566738 112567348 -169626316 - L1MC5 LINE L1 -547 7495 6976 2278 87 0 3 chr1 112567348 112567637 -169626027 - AluSg SINE Alu -22 288 1 1061 258 82 97 chr1 112567637 112567909 -169625755 - L1MC5 LINE L1 -1066 6976 6701 896 143 0 0 chr1 112567965 112568098 -169625566 + FLAM_C SINE Alu 1 133 0 34 24 0 0 chr1 112568606 112568647 -169625017 + AT_rich Low_complexity Low_complexity 1 41 0 520 274 39 61 chr1 112568677 112568987 -169624677 - HAL1b LINE L1 -703 645 343 244 230 33 138 chr1 112569667 112569819 -169623845 + LTR67 LTR ERVL 418 553 -4 784 166 129 36 chr1 112569852 112570045 -169623619 + MER2 DNA MER2_type 1 211 -134 271 293 73 0 chr1 112570184 112570266 -169623398 + L2 LINE L2 3169 3256 -16 444 305 137 0 chr1 112570268 112570458 -169623206 + L2 LINE L2 3097 3312 -1 1433 172 62 7 chr1 112570661 112570934 -169622730 + AluJo SINE Alu 1 288 -24 1979 133 17 10 chr1 112570942 112571244 -169622420 + AluSq SINE Alu 1 304 -9 533 205 57 114 chr1 112571438 112571530 -169622134 - L1MC4 LINE L1 -1 8041 7945 1952 196 141 31 chr1 112571530 112572041 -169621623 - MLT1F1 LTR MaLR 0 567 1 533 205 57 114 chr1 112572041 112572246 -169621418 - L1MC4 LINE L1 -97 7945 7761 181 323 42 31 chr1 112572609 112572705 -169620959 + MIR SINE MIR 89 185 -77 28 29 0 0 chr1 112573416 112573451 -169620213 + GC_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr1 112573930 112573950 -169619714 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2170 113 0 13 chr1 112575247 112575548 -169618116 - AluSg SINE Alu -11 299 3 2025 142 7 0 chr1 112576432 112576728 -169616936 + AluSx SINE Alu 1 298 -14 2137 135 10 6 chr1 112577383 112577695 -169615969 - AluSq SINE Alu 0 313 1 21 0 0 0 chr1 112578224 112578245 -169615419 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr1 112578338 112578368 -169615296 + AT_rich Low_complexity Low_complexity 1 30 0 5585 94 39 1 chr1 112578368 112579296 -169614368 - L1PB2 LINE L1 -6 6145 5186 2152 114 0 7 chr1 112579296 112579586 -169614078 - AluSp SINE Alu -8 305 18 3062 195 13 0 chr1 112579596 112580310 -169613354 - L1PB2 LINE L1 -1300 4846 4124 630 154 24 95 chr1 112580313 112580482 -169613182 - L1MA3 LINE L1 0 6305 6149 272 175 35 18 chr1 112580486 112580576 -169613088 - AluYb8 SINE Alu 0 323 233 216 0 0 0 chr1 112580606 112580630 -169613034 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1845 175 0 3 chr1 112580834 112581126 -169612538 + AluJb SINE Alu 1 291 -21 883 155 9 61 chr1 112581455 112581668 -169611996 + L1M4 LINE L1 4760 4961 -1185 1663 166 51 10 chr1 112581668 112581982 -169611682 + MLT1A1 LTR MaLR 1 327 -38 1911 144 20 23 chr1 112581983 112582288 -169611376 + AluJb SINE Alu 1 304 -8 1526 148 14 3 chr1 112582302 112582585 -169611079 + L1MA8 LINE L1 3807 4092 -2054 1470 145 50 37 chr1 112582585 112582935 -169610729 - THE1C LTR MaLR 0 364 1 5894 140 47 43 chr1 112582935 112583606 -169610058 + L1MA8 LINE L1 4088 4755 -1536 1670 192 7 3 chr1 112583606 112583893 -169609771 + AluJo SINE Alu 1 288 -24 5894 140 47 43 chr1 112583893 112583916 -169609748 + L1MA8 LINE L1 4755 4776 -1515 817 149 0 0 chr1 112583916 112584037 -169609627 + FLAM_A SINE Alu 1 121 -12 5894 140 47 43 chr1 112584037 112584141 -169609523 + L1MA8 LINE L1 4776 4878 -1413 1623 183 7 27 chr1 112584141 112584442 -169609222 - AluJo SINE Alu -17 295 1 5894 140 47 43 chr1 112584442 112585562 -169608102 + L1MA8 LINE L1 4878 6010 -281 236 91 0 0 chr1 112585588 112585621 -169608043 + MLT1A1 LTR MaLR 333 365 0 1161 195 19 35 chr1 112585621 112585657 -169608007 + L1M4 LINE L1 4957 4992 -1154 2382 28 42 0 chr1 112585657 112585944 -169607720 + AluY SINE Alu 1 299 -12 1161 195 19 35 chr1 112585944 112586089 -169607575 + L1M4 LINE L1 4992 5133 -1013 798 197 7 20 chr1 112586089 112586241 -169607423 + FRAM SINE Alu 5 154 -12 1161 195 19 35 chr1 112586241 112586376 -169607288 + L1M4 LINE L1 5133 5269 -877 479 207 0 0 chr1 112586377 112586464 -169607200 - Tigger3(Golem) DNA MER2_type -3 3026 2940 273 128 0 0 chr1 112586467 112586514 -169607150 - L1MB2 LINE L1 -10 6161 6115 189 0 0 0 chr1 112586514 112586535 -169607129 + (T)n Simple_repeat Simple_repeat 1 21 0 5044 152 47 35 chr1 112586637 112586800 -169606864 - L1 LINE L1 -1281 4865 4705 2417 82 3 0 chr1 112586800 112587104 -169606560 - AluSx SINE Alu -7 305 1 5044 152 47 35 chr1 112587104 112587996 -169605668 - L1 LINE L1 -1441 4705 3792 2390 82 3 7 chr1 112587996 112588300 -169605364 - AluSp SINE Alu -10 303 1 5044 152 47 35 chr1 112588300 112588411 -169605253 - L1 LINE L1 -2354 3792 3684 203 236 0 36 chr1 112588679 112588734 -169604930 - L2 LINE L2 -38 3234 3182 2208 96 28 3 chr1 112588768 112589059 -169604605 - AluSx SINE Alu -14 298 1 249 314 58 73 chr1 112589059 112589377 -169604287 + L2 LINE L2 1918 2232 -1082 266 310 90 0 chr1 112589930 112590030 -169603634 + L2 LINE L2 2685 2793 -521 209 318 62 31 chr1 112590762 112590891 -169602773 + L3 LINE CR1 1408 1540 -37 1958 152 7 3 chr1 112591392 112591689 -169601975 + AluJb SINE Alu 9 306 -6 2308 93 0 0 chr1 112591690 112591980 -169601684 + AluSc SINE Alu 1 290 -19 556 262 73 39 chr1 112592430 112592636 -169601028 - MIR SINE MIR -28 234 22 2373 86 0 13 chr1 112593004 112593307 -169600357 - AluSc SINE Alu -10 299 1 2362 104 0 16 chr1 112593346 112593662 -169600002 - AluSx SINE Alu -1 311 1 21 0 0 0 chr1 112594050 112594071 -169599593 + AT_rich Low_complexity Low_complexity 1 21 0 1244 127 0 11 chr1 112594606 112594787 -169598877 - AluSg/x SINE Alu 0 312 134 2156 129 0 0 chr1 112594787 112595089 -169598575 - AluSg1 SINE Alu -7 302 1 25 0 0 0 chr1 112596136 112596161 -169597503 + AT_rich Low_complexity Low_complexity 1 25 0 3477 76 85 21 chr1 112596161 112596320 -169597344 - L1MA3 LINE L1 0 6305 6158 180 0 0 0 chr1 112596320 112596340 -169597324 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2289 98 0 0 chr1 112596343 112596629 -169597035 - AluSc SINE Alu -23 286 1 3477 76 85 21 chr1 112596629 112597032 -169596632 - L1MA3 LINE L1 -148 6157 5703 1266 105 6 0 chr1 112597032 112597204 -169596460 + AluSp SINE Alu 126 298 -15 2570 117 66 26 chr1 112597205 112597837 -169595827 - L1MA3 LINE L1 -590 5715 5062 384 194 0 0 chr1 112597845 112597917 -169595747 + MER58A DNA MER1_type 47 118 0 2087 142 6 0 chr1 112597921 112598232 -169595432 - AluSq SINE Alu 0 313 1 254 250 163 0 chr1 112598498 112598590 -169595074 + MIR SINE MIR 119 225 -37 563 243 173 26 chr1 112598875 112599101 -169594563 + MIR SINE MIR 2 260 -2 239 216 27 0 chr1 112599318 112599392 -169594272 + (CATA)n Simple_repeat Simple_repeat 1 76 0 2099 116 16 19 chr1 112599723 112600033 -169593631 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 112600093 112600115 -169593549 + AT_rich Low_complexity Low_complexity 1 22 0 246 174 0 0 chr1 112600126 112600172 -169593492 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 973 258 98 16 chr1 112600932 112601300 -169592364 - MLT1J LTR MaLR 0 511 114 266 237 237 9 chr1 112602895 112603009 -169590655 - MER58C DNA MER1_type 0 215 76 918 129 0 0 chr1 112603381 112603505 -169590159 + AluSq/x SINE Alu 10 133 -179 418 238 8 0 chr1 112603592 112603714 -169589950 - L1MB7 LINE L1 -2 6182 6060 234 62 0 0 chr1 112603716 112603748 -169589916 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 351 0 0 0 chr1 112603844 112603883 -169589781 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 857 182 26 13 chr1 112603936 112604090 -169589574 + FRAM SINE Alu 1 156 -20 1839 153 25 0 chr1 112604098 112604380 -169589284 + AluJb SINE Alu 1 289 -23 964 225 37 13 chr1 112604695 112604725 -169588939 - L1ME1 LINE L1 -96 6070 6042 1809 135 39 0 chr1 112604725 112605007 -169588657 - AluSg SINE Alu -17 293 1 964 225 37 13 chr1 112605007 112605284 -169588380 - L1ME1 LINE L1 -124 6042 5824 1160 162 0 0 chr1 112605290 112605469 -169588195 - AluJb SINE Alu 0 312 134 1708 131 81 39 chr1 112605469 112605752 -169587912 - AluJb SINE Alu -17 295 1 408 171 36 50 chr1 112606017 112606271 -169587393 + CT-rich Low_complexity Low_complexity 1 250 0 379 196 31 0 chr1 112606305 112606402 -169587262 + CT-rich Low_complexity Low_complexity 3 102 0 557 192 92 0 chr1 112606430 112606550 -169587114 - FLAM_A SINE Alu -2 131 1 997 87 255 11 chr1 112607003 112607187 -169586477 - MER30 DNA MER1_type 0 230 2 2678 33 0 0 chr1 112607286 112607592 -169586072 + AluY SINE Alu 1 306 -5 701 190 0 0 chr1 112607598 112607714 -169585950 - FLAM_C SINE Alu -25 118 3 1096 184 0 31 chr1 112607821 112608044 -169585620 - AluJb SINE Alu -11 301 86 1650 156 18 14 chr1 112608107 112608382 -169585282 + AluJb SINE Alu 1 276 -36 2087 106 4 0 chr1 112609290 112609590 -169584074 + AluSq SINE Alu 12 312 0 1209 287 107 24 chr1 112610548 112611094 -169582570 - L2 LINE L2 0 3313 2717 1545 178 3 62 chr1 112611749 112612058 -169581606 + AluJb SINE Alu 1 291 -21 319 252 107 38 chr1 112612076 112612207 -169581457 - L1M4 LINE L1 -2276 3870 3731 275 292 117 35 chr1 112613180 112613351 -169580313 + Charlie8 DNA MER1_type 77 261 -2156 791 317 184 8 chr1 112613470 112613959 -169579705 + L2 LINE L2 2213 2787 -527 520 327 154 18 chr1 112614011 112614341 -169579323 + L2 LINE L2 2929 3303 -10 311 387 32 0 chr1 112614357 112614481 -169579183 + MIR3 SINE MIR 52 179 -29 232 313 60 0 chr1 112614580 112614647 -169579017 - L2 LINE L2 -40 3232 3162 2158 116 0 13 chr1 112614871 112615173 -169578491 + AluSq SINE Alu 1 298 -15 2090 115 6 16 chr1 112615173 112615485 -169578179 + AluSg SINE Alu 1 309 -1 1783 157 4 0 chr1 112616289 112616556 -169577108 - AluJo SINE Alu -44 268 1 629 260 120 10 chr1 112617031 112617231 -169576433 - MIR SINE MIR -14 248 27 26 30 0 0 chr1 112617861 112617894 -169575770 + AT_rich Low_complexity Low_complexity 1 33 0 1663 155 14 37 chr1 112619366 112619662 -169574002 + AluSx SINE Alu 1 289 -23 685 174 0 9 chr1 112619762 112619877 -169573787 + FLAM_A SINE Alu 23 136 -6 2259 87 21 0 chr1 112620177 112620464 -169573200 + AluSq SINE Alu 1 293 -20 899 143 21 7 chr1 112620474 112620614 -169573050 + AluJ SINE Alu 1 142 -170 347 147 0 0 chr1 112620617 112620681 -169572983 + AluJb SINE Alu 200 256 -46 2077 133 7 13 chr1 112621945 112622254 -169571410 - AluSx SINE Alu -5 307 1 27 49 0 0 chr1 112623915 112623956 -169569708 + AT_rich Low_complexity Low_complexity 1 41 0 1163 187 21 121 chr1 112627092 112627424 -169566240 - AluJb SINE Alu -3 299 1 2030 137 9 16 chr1 112627546 112627861 -169565803 - AluSq SINE Alu 0 313 1 1745 171 4 0 chr1 112628884 112629158 -169564506 - AluJb SINE Alu -27 285 11 269 217 0 67 chr1 112629217 112629277 -169564387 + AluSg/x SINE Alu 120 170 -132 883 185 40 0 chr1 112629278 112629429 -169564235 + AluJo/FRAM SINE Alu 142 298 -14 1801 255 128 35 chr1 112629440 112630797 -169562867 + L1MEc LINE L1 745 2226 -4170 307 253 130 0 chr1 112630829 112630991 -169562673 + L1MEc LINE L1 2287 2469 -3927 909 241 130 62 chr1 112631553 112631601 -169562063 + L1ME1 LINE L1 762 805 -5604 1851 154 36 0 chr1 112631601 112631881 -169561783 + AluSx SINE Alu 1 290 -22 909 241 130 62 chr1 112631881 112632446 -169561218 + L1ME1 LINE L1 805 1417 -4992 871 163 0 0 chr1 112632473 112632614 -169561050 + AluJb SINE Alu 170 310 -2 1650 229 86 50 chr1 112632614 112633142 -169560522 + L1ME1 LINE L1 1433 2001 -4405 2190 122 0 0 chr1 112633142 112633453 -169560211 - AluY SINE Alu 0 311 1 1650 229 86 50 chr1 112633453 112633723 -169559941 + L1ME1 LINE L1 2001 2260 -4146 891 210 17 0 chr1 112633749 112633925 -169559739 - AluJb SINE Alu 0 312 134 240 152 0 0 chr1 112633945 112633991 -169559673 - L1M4 LINE L1 -3299 2847 2802 326 197 0 0 chr1 112633994 112634055 -169559609 - L1M4 LINE L1 -3401 2745 2685 1944 161 3 3 chr1 112634057 112634368 -169559296 + AluJb SINE Alu 1 311 -1 7398 223 71 22 chr1 112634368 112635149 -169558515 + L1ME1 LINE L1 3186 3927 -2499 1923 129 3 43 chr1 112635149 112635474 -169558190 + AluSx SINE Alu 1 312 0 7398 223 71 22 chr1 112635474 112635824 -169557840 + L1ME1 LINE L1 3927 4258 -2168 1696 175 7 16 chr1 112635824 112636133 -169557531 + AluJb SINE Alu 1 306 -6 7398 223 71 22 chr1 112636133 112637412 -169556252 + L1ME1 LINE L1 4258 5473 -953 2114 118 7 3 chr1 112637412 112637708 -169555956 + AluSx SINE Alu 1 297 -15 7398 223 71 22 chr1 112637708 112638121 -169555543 + L1ME1 LINE L1 5473 5864 -562 1923 161 0 16 chr1 112638121 112638438 -169555226 + AluJb SINE Alu 1 312 0 7398 223 71 22 chr1 112638438 112638691 -169554973 + L1ME1 LINE L1 5864 6420 -6 703 194 0 8 chr1 112638863 112638992 -169554672 + FLAM_A SINE Alu 1 128 -5 252 258 73 16 chr1 112639003 112639127 -169554537 + L1P5 LINE L1 5328 5458 -696 601 270 80 29 chr1 112639140 112639414 -169554250 + L1MC4a LINE L1 5612 5899 -1909 220 299 0 0 chr1 112639424 112639491 -169554173 + (TA)n Simple_repeat Simple_repeat 2 68 0 2140 113 3 0 chr1 112640563 112640847 -169552817 + AluSx SINE Alu 1 285 -27 207 100 0 0 chr1 112640847 112640877 -169552787 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 509 193 44 52 chr1 112640917 112641052 -169552612 + L2 LINE L2 3180 3313 0 232 304 0 0 chr1 112641463 112641532 -169552132 + Charlie7 DNA MER1_type 33 101 -2511 577 276 99 33 chr1 112641576 112641819 -169551845 - MIR SINE MIR 0 262 4 21 82 0 0 chr1 112642666 112642715 -169550949 + AT_rich Low_complexity Low_complexity 1 49 0 2092 113 10 7 chr1 112642973 112643273 -169550391 + AluSx SINE Alu 1 301 -11 2610 225 28 16 chr1 112644436 112645041 -169548623 - MER90 LTR ERV1 0 614 3 1983 140 0 20 chr1 112645044 112645344 -169548320 - AluSx SINE Alu -18 294 1 849 219 0 0 chr1 112645385 112645545 -169548119 + FRAM SINE Alu 1 160 -16 2348 68 4 0 chr1 112645825 112646134 -169547530 + AluY SINE Alu 1 310 0 27 29 0 0 chr1 112646548 112646582 -169547082 + AT_rich Low_complexity Low_complexity 1 34 0 1819 148 3 29 chr1 112647142 112647452 -169546212 + AluJb SINE Alu 1 302 -10 373 245 107 71 chr1 112649244 112649497 -169544167 + MIR SINE MIR 1 262 0 891 74 25 0 chr1 112650065 112650186 -169543478 + L1PA10 LINE L1 6045 6168 0 1121 225 0 0 chr1 112650252 112650465 -169543199 + MIR SINE MIR 49 261 -1 652 245 87 43 chr1 112651746 112652138 -169541526 - L1ME4a LINE L1 -70 6051 5643 827 275 0 0 chr1 112653329 112653507 -169540157 + MER5A DNA MER1_type 1 178 -11 807 234 11 0 chr1 112653680 112653855 -169539809 + L1PA16 LINE L1 5967 6143 -23 2355 60 0 63 chr1 112653905 112654237 -169539427 + AluY SINE Alu 1 311 0 663 204 0 15 chr1 112654464 112654596 -169539068 + FLAM_A SINE Alu 9 138 -4 315 304 130 62 chr1 112654612 112654980 -169538684 + L1ME3 LINE L1 3383 3724 -2422 1472 176 0 107 chr1 112654980 112655316 -169538348 + AluJb SINE Alu 1 300 -2 315 304 130 62 chr1 112655316 112655821 -169537843 + L1ME3 LINE L1 3724 4316 -1830 225 171 0 24 chr1 112655939 112655980 -169537684 + GA-rich Low_complexity Low_complexity 2 41 0 1783 159 30 3 chr1 112656126 112656421 -169537243 + AluJb SINE Alu 3 305 -7 298 271 105 24 chr1 112656430 112656677 -169536987 + L1ME3 LINE L1 4896 5162 -984 501 286 50 0 chr1 112656774 112656973 -169536691 + L1ME3 LINE L1 5189 5397 -749 1721 217 122 21 chr1 112657005 112657530 -169536134 + L1ME3 LINE L1 5542 6119 -43 2124 124 10 0 chr1 112657590 112657888 -169535776 + AluSq SINE Alu 1 301 -12 304 296 34 57 chr1 112657909 112657949 -169535715 + L1M4 LINE L1 5272 5311 -873 2180 115 3 10 chr1 112657949 112658254 -169535410 + AluSg SINE Alu 1 303 -7 304 296 34 57 chr1 112658254 112658389 -169535275 + L1M4 LINE L1 5311 5443 -741 244 301 79 61 chr1 112658435 112658616 -169535048 + L1ME4a LINE L1 5296 5487 -2321 2219 105 17 0 chr1 112658616 112658911 -169534753 + AluSp SINE Alu 1 300 -13 244 301 79 61 chr1 112658911 112659071 -169534593 + L1ME4a LINE L1 5487 5643 -2165 302 257 52 10 chr1 112659083 112659246 -169534418 + L1ME4a LINE L1 5701 5819 -302 365 202 104 49 chr1 112659360 112659543 -169534121 + L1ME4a LINE L1 5926 6118 -3 2150 170 81 2 chr1 112660115 112660509 -169533155 + MSTB LTR MaLR 2 426 0 406 147 44 15 chr1 112661104 112661172 -169532492 + MER5A DNA MER1_type 34 103 -86 2702 10 0 16 chr1 112661344 112661648 -169532016 + AluYa5 SINE Alu 1 299 -12 255 325 67 3 chr1 112661658 112661783 -169531881 - MIR SINE MIR -72 136 30 461 238 116 31 chr1 112662389 112662623 -169531041 + L1MC5 LINE L1 7000 7250 -728 24 0 0 0 chr1 112663078 112663102 -169530562 + AT_rich Low_complexity Low_complexity 1 24 0 2294 113 0 0 chr1 112663122 112663424 -169530240 - AluSg SINE Alu -8 302 1 1734 178 3 3 chr1 112664967 112665254 -169528410 - AluJb SINE Alu -24 288 2 1970 156 21 15 chr1 112665284 112665618 -169528046 - MER1B DNA MER1_type 0 337 2 294 29 0 0 chr1 112665797 112665832 -169527832 + (TG)n Simple_repeat Simple_repeat 1 35 0 38 22 0 0 chr1 112665841 112665886 -169527778 + AT_rich Low_complexity Low_complexity 1 45 0 2403 71 27 0 chr1 112665973 112666267 -169527397 + AluSc SINE Alu 1 302 -7 243 185 346 12 chr1 112666729 112666810 -169526854 + MIR SINE MIR 124 231 -31 1585 176 22 0 chr1 112667069 112667371 -169526293 + AluSx SINE Alu 1 308 0 575 198 0 0 chr1 112668278 112668384 -169525280 + FLAM_A SINE Alu 1 106 -36 282 297 14 0 chr1 112668414 112668488 -169525176 + MIR3 SINE MIR 116 190 -18 2088 122 0 0 chr1 112668598 112668904 -169524760 - AluSx SINE Alu 0 311 6 244 220 102 17 chr1 112669467 112669526 -169524138 - L2 LINE L2 -33 3280 3217 1662 194 10 3 chr1 112669529 112669823 -169523841 + AluJo SINE Alu 1 296 -16 227 293 253 0 chr1 112669991 112670134 -169523530 - MIR SINE MIR -48 214 38 945 238 104 0 chr1 112670519 112670750 -169522914 - MIR SINE MIR -2 260 6 226 297 16 16 chr1 112670874 112670938 -169522726 + L2 LINE L2 3204 3267 -5 1744 176 0 25 chr1 112670969 112671288 -169522376 + AluJo SINE Alu 1 311 -1 1168 165 52 0 chr1 112671320 112671532 -169522132 - MER58A DNA MER1_type 0 224 2 459 183 0 19 chr1 112671790 112671894 -169521770 - AluY SINE Alu -209 102 1 591 104 31 0 chr1 112671895 112672058 -169521606 - L1MB3 LINE L1 -48 6135 5824 336 237 85 85 chr1 112672284 112672402 -169521262 - LTR67 LTR ERVL -404 153 36 825 181 77 0 chr1 112672786 112672941 -169520723 - AluJb SINE Alu -11 301 135 195 69 0 0 chr1 112672942 112672971 -169520693 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 863 108 0 15 chr1 112673009 112673139 -169520525 - FLAM_C SINE Alu 0 143 16 529 292 19 0 chr1 112673379 112673533 -169520131 + L1MC4a LINE L1 5769 5925 -1883 317 250 34 61 chr1 112675191 112675339 -169518325 - HAL1 LINE L1 -30 2477 2334 290 60 3 0 chr1 112675499 112675542 -169518122 + AluYa5/8 SINE Alu 198 234 -67 2124 112 20 3 chr1 112675752 112676048 -169517616 - AluSq SINE Alu -12 301 1 1017 247 106 46 chr1 112676073 112676672 -169516992 - L1ME LINE L1 -423 5739 5177 1588 137 181 63 chr1 112676672 112676711 -169516953 - MSTA LTR MaLR 0 428 395 1363 217 37 0 chr1 112676711 112677011 -169516653 + AluJb SINE Alu 1 311 -1 1588 137 181 63 chr1 112677011 112677352 -169516312 - MSTA LTR MaLR -33 395 3 1017 247 106 46 chr1 112677352 112677571 -169516093 - L1ME LINE L1 -985 5177 4973 2141 121 0 3 chr1 112677571 112677868 -169515796 + AluJb SINE Alu 1 296 -16 1017 247 106 46 chr1 112677868 112678874 -169514790 - L1ME LINE L1 -1189 4973 3802 237 53 26 0 chr1 112678891 112678929 -169514735 + (TTTTG)n Simple_repeat Simple_repeat 2 155 0 1299 92 0 0 chr1 112678929 112679092 -169514572 - AluSg/x SINE Alu -1 318 119 588 133 0 0 chr1 112679094 112679192 -169514472 - AluSx SINE Alu 0 309 212 2479 71 0 0 chr1 112679195 112679491 -169514173 - AluY SINE Alu -15 296 1 367 68 17 34 chr1 112679493 112679552 -169514112 - AluJb SINE Alu -167 135 78 1308 150 5 9 chr1 112679552 112679765 -169513899 - AluSx SINE Alu -100 212 1 609 253 44 61 chr1 112679766 112680062 -169513602 - L1ME LINE L1 -2359 3787 3497 1473 262 61 46 chr1 112680099 112680369 -169513295 - L1ME LINE L1 -2988 3158 2894 1912 161 0 7 chr1 112680369 112680679 -169512985 + AluJo SINE Alu 5 312 0 1473 262 61 46 chr1 112680679 112681274 -169512390 - L1ME LINE L1 -3252 2894 2280 966 195 11 0 chr1 112681289 112681463 -169512201 + AluJb SINE Alu 133 308 -4 181 125 21 21 chr1 112681482 112681530 -169512134 + GA-rich Low_complexity Low_complexity 4 51 0 2664 146 57 2 chr1 112681533 112682040 -169511624 - L1MB7 LINE L1 -19 6165 5631 225 229 0 0 chr1 112682167 112682215 -169511449 + L1P5 LINE L1 5405 5452 -702 718 285 39 14 chr1 112682224 112682505 -169511159 + L1ME LINE L1 5506 5793 -369 415 250 125 12 chr1 112682500 112682660 -169511004 - L1MC4a LINE L1 -1941 5867 5690 * 263 347 74 0 chr1 112682693 112682788 -169510876 - L1MC4a LINE L1 -2199 5609 5508 273 253 13 0 chr1 112682987 112683062 -169510602 - L1ME LINE L1 -303 5818 5743 238 231 0 15 chr1 112683239 112683304 -169510360 - L1ME LINE L1 -347 5774 5711 398 337 16 26 chr1 112683321 112683514 -169510150 + MIR SINE MIR 71 261 -1 183 311 49 16 chr1 112684053 112684114 -169509550 + L2 LINE L2 3191 3253 -19 2229 105 0 3 chr1 112684338 112684673 -169508991 - AluSx SINE Alu 0 334 1 382 306 119 33 chr1 112684768 112685128 -169508536 - MLT1L LTR MaLR -100 515 125 469 248 50 8 chr1 112685255 112685376 -169508288 - MLT1L LTR MaLR -363 252 127 1304 113 5 47 chr1 112685376 112685589 -169508075 - THE1B LTR MaLR 0 364 161 4319 82 2 0 chr1 112685589 112686162 -169507502 - THE1B-int LTR MaLR -1006 574 1 1197 109 73 73 chr1 112686166 112686358 -169507306 - THE1B LTR MaLR -4 360 180 1217 129 0 0 chr1 112686363 112686533 -169507131 + AluSp SINE Alu 136 305 -8 1068 139 69 0 chr1 112686533 112686706 -169506958 - THE1B LTR MaLR -190 185 1 351 252 57 24 chr1 112686882 112687005 -169506659 - MER31B LTR ERV1 -339 127 1 1656 154 16 39 chr1 112687399 112687705 -169505959 + AluJo SINE Alu 3 301 -11 517 255 181 0 chr1 112687884 112688033 -169505631 - MER5A DNA MER1_type 0 189 14 970 114 0 0 chr1 112688312 112688444 -169505220 - AluSg/x SINE Alu -12 300 169 1038 141 0 0 chr1 112688544 112688686 -169504978 - AluSq/x SINE Alu -170 142 1 650 150 0 0 chr1 112688760 112688860 -169504804 + FLAM_C SINE Alu 17 116 -27 22 0 0 0 chr1 112688860 112688882 -169504782 + AT_rich Low_complexity Low_complexity 1 22 0 344 329 73 7 chr1 112688897 112689034 -169504630 - MIR3 SINE MIR -8 200 55 1852 137 51 3 chr1 112689812 112690105 -169503559 - AluSg SINE Alu -3 307 1 4015 163 21 16 chr1 112690330 112690531 -169503133 + L1MB7 LINE L1 5403 5601 -583 2018 150 0 0 chr1 112690531 112690825 -169502839 + AluJb SINE Alu 1 294 -18 4015 163 21 16 chr1 112690825 112691392 -169502272 + L1MB7 LINE L1 5601 6175 -9 24 0 0 0 chr1 112691528 112691552 -169502112 + AT_rich Low_complexity Low_complexity 1 24 0 2129 104 10 3 chr1 112691554 112691851 -169501813 + AluSq SINE Alu 1 299 -14 29 0 0 0 chr1 112692614 112692643 -169501021 + AT_rich Low_complexity Low_complexity 1 29 0 2532 31 3 0 chr1 112693563 112693854 -169499810 + AluY SINE Alu 1 292 -19 2168 115 45 22 chr1 112694796 112695152 -169498512 - THE1B LTR MaLR 0 364 1 1711 153 11 31 chr1 112695306 112695593 -169498071 - AluJb SINE Alu -21 291 11 426 162 0 0 chr1 112696325 112696393 -169497271 - AluS SINE Alu -235 68 1 579 194 82 30 chr1 112696472 112696606 -169497058 - MIR SINE MIR -120 142 2 745 156 8 8 chr1 112696901 112697023 -169496641 + FLAM_C SINE Alu 1 122 -11 195 289 19 0 chr1 112697354 112697406 -169496258 + MIR3 SINE MIR 153 205 -3 1018 150 40 0 chr1 112698378 112698551 -169495113 + FRAM SINE Alu 1 176 0 1516 186 83 0 chr1 112698610 112698997 -169494667 - L1P LINE L1 -767 5398 4989 191 324 203 0 chr1 112699091 112699165 -169494499 - L2 LINE L2 0 3272 3184 1801 157 0 0 chr1 112699272 112699540 -169494124 + AluSq SINE Alu 1 268 -45 243 0 0 0 chr1 112700317 112700344 -169493320 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 970 189 0 0 chr1 112700346 112700505 -169493159 - FAM SINE Alu -16 159 1 197 238 133 106 chr1 112700976 112701148 -169492516 - L2 LINE L2 -798 2516 2333 2071 102 30 23 chr1 112701148 112701453 -169492211 - AluSp SINE Alu -6 307 1 197 238 133 106 chr1 112701453 112701536 -169492128 - L2 LINE L2 -981 2333 2254 1066 198 22 40 chr1 112702088 112702315 -169491349 - MIR SINE MIR -2 260 38 23 0 0 0 chr1 112703101 112703124 -169490540 + AT_rich Low_complexity Low_complexity 1 23 0 39 38 0 0 chr1 112703390 112703443 -169490221 + AT_rich Low_complexity Low_complexity 1 53 0 230 116 23 0 chr1 112704774 112704817 -169488847 + GA-rich Low_complexity Low_complexity 3 46 0 324 173 0 0 chr1 112704963 112705015 -169488649 - L2 LINE L2 0 3272 3221 2002 83 75 4 chr1 112705516 112705794 -169487870 + AluSc SINE Alu 1 298 -11 326 297 189 96 chr1 112705922 112706276 -169487388 - L2 LINE L2 0 3272 2886 1426 203 48 0 chr1 112706426 112706697 -169486967 - AluJo SINE Alu -28 284 1 1869 121 90 16 chr1 112707011 112707334 -169486330 - MER7A DNA MER2_type 0 346 2 568 244 278 10 chr1 112707474 112707679 -169485985 - MIR SINE MIR 0 262 3 204 132 26 0 chr1 112708596 112708634 -169485030 + (TG)n Simple_repeat Simple_repeat 1 39 0 220 322 0 81 chr1 112709359 112709446 -169484218 - MIR SINE MIR -40 168 88 370 317 122 45 chr1 112709487 112709954 -169483710 + L2 LINE L2 2140 2642 -672 308 332 43 79 chr1 112710014 112710267 -169483397 + L2 LINE L2 2977 3220 -52 199 364 50 36 chr1 112710395 112710535 -169483129 + L2 LINE L2 2918 3059 -213 1553 186 0 8 chr1 112710667 112710931 -169482733 + AluJo SINE Alu 1 262 -50 243 267 0 50 chr1 112710975 112711035 -169482629 - MIR SINE MIR -133 75 19 23 33 0 0 chr1 112712543 112712573 -169481091 + AT_rich Low_complexity Low_complexity 1 30 0 283 331 13 53 chr1 112712768 112712919 -169480745 - L2 LINE L2 0 3313 3169 23 54 0 0 chr1 112713130 112713167 -169480497 + AT_rich Low_complexity Low_complexity 1 37 0 892 136 0 0 chr1 112713200 112713332 -169480332 + AluJo SINE Alu 2 133 -169 967 149 167 0 chr1 112713406 112713580 -169480084 + MER3 DNA MER1_type 4 206 -3 265 274 57 109 chr1 112714150 112714325 -169479339 + L2 LINE L2 200 365 -2949 840 255 32 65 chr1 112714550 112714801 -169478863 + LTR40a LTR ERVL 1 242 -277 1924 138 0 17 chr1 112714801 112715097 -169478567 + AluJo SINE Alu 1 291 -21 840 255 32 65 chr1 112715097 112715155 -169478509 + LTR40a LTR ERVL 242 300 -219 328 200 0 13 chr1 112715687 112715762 -169477902 - HsTC2 DNA Tc2 -13 1885 1812 645 107 22 51 chr1 112715827 112715968 -169477696 - L1MA8 LINE L1 -4 6296 6156 369 146 135 10 chr1 112715970 112716066 -169477598 - MER104 DNA Tc2 -72 108 1 2386 120 3 3 chr1 112716146 112716487 -169477177 - MER7A DNA MER2_type -6 340 2 491 243 128 66 chr1 112716571 112716814 -169476850 + MIR SINE MIR 5 262 0 1015 157 55 46 chr1 112717083 112717300 -169476364 - MER20 DNA MER1_type 0 219 1 1994 87 6 81 chr1 112718212 112718534 -169475130 - AluSx SINE Alu -14 298 1 493 286 33 44 chr1 112719801 112719983 -169473681 - MIR3 SINE MIR -28 180 1 462 317 144 14 chr1 112720099 112720307 -169473357 - L2 LINE L2 0 3272 3038 184 295 189 21 chr1 112720284 112720379 -169473285 + MIR SINE MIR 31 141 -67 * 1162 141 66 23 chr1 112720673 112720929 -169472735 + MER33 DNA MER1_type 5 271 -53 966 207 11 5 chr1 112720929 112721117 -169472547 + AluJo SINE Alu 122 310 -2 352 160 53 0 chr1 112721255 112721330 -169472334 - LTR16A LTR ERVL -237 213 135 268 327 180 34 chr1 112721503 112721919 -169471745 - L2 LINE L2 -354 2960 2484 862 204 51 0 chr1 112721919 112722095 -169471569 - MIR SINE MIR -43 219 35 1317 112 14 56 chr1 112723636 112723850 -169469814 - AluJb SINE Alu -17 295 91 277 283 196 30 chr1 112724721 112724951 -169468713 - L3b LINE CR1 -204 1379 1112 1828 139 4 18 chr1 112725162 112725442 -169468222 + AluSx SINE Alu 1 276 -36 842 153 35 122 chr1 112725983 112726212 -169467452 + MER3 DNA MER1_type 1 209 0 634 272 110 45 chr1 112726244 112726553 -169467111 - MLT1J2 LTR MaLR -37 413 85 180 0 0 0 chr1 112727569 112727589 -169466075 + (CA)n Simple_repeat Simple_repeat 1 20 0 1125 176 45 93 chr1 112727589 112727879 -169465785 - AluJb SINE Alu -36 276 1 283 353 20 0 chr1 112728082 112728184 -169465480 + L2 LINE L2 3205 3308 -5 316 282 31 80 chr1 112729332 112729379 -169464285 + L1ME4a LINE L1 5762 5810 -311 226 0 0 0 chr1 112729379 112729404 -169464260 + (TTTA)n Simple_repeat Simple_repeat 1 156 0 1951 123 11 0 chr1 112729404 112729681 -169463983 - AluSg SINE Alu -30 280 1 316 282 31 80 chr1 112729681 112729795 -169463869 + L1ME4a LINE L1 5808 5916 -205 1622 190 9 35 chr1 112729939 112730111 -169463553 - AluJo SINE Alu -4 308 146 2135 102 0 26 chr1 112730111 112730415 -169463249 - AluSx SINE Alu -6 306 11 1622 190 9 35 chr1 112730415 112730558 -169463106 - AluJo SINE Alu -166 146 1 2377 93 0 0 chr1 112731444 112731744 -169461920 - AluSx SINE Alu -12 300 1 216 67 0 0 chr1 112732211 112732241 -169461423 + (A)n Simple_repeat Simple_repeat 1 30 0 306 269 0 0 chr1 112732471 112732538 -169461126 - L2 LINE L2 -1 3312 3246 697 163 103 16 chr1 112732868 112733052 -169460612 - MER5C DNA MER1_type -124 200 1 305 200 17 0 chr1 112733052 112733112 -169460552 - L2 LINE L2 -505 2809 2749 1433 226 189 34 chr1 112733112 112733608 -169460056 - L2 LINE L2 -857 2457 1885 2312 133 83 35 chr1 112733804 112734286 -169459378 + L1MB3 LINE L1 5673 6177 -6 413 310 35 0 chr1 112734828 112734944 -169458720 - MER5B DNA MER1_type -58 120 1 4958 82 1 8 chr1 112735375 112736084 -169457580 + L1P3 LINE L1 8 711 -5750 524 328 31 5 chr1 112836084 112836276 -169357388 - ERVL LTR ERVL -522 5242 5046 217 268 106 41 chr1 112836279 112836402 -169357262 - L3 LINE CR1 -91 1486 1356 1034 277 77 21 chr1 112836402 112836781 -169356883 - ERVL LTR ERVL -868 4896 4497 1847 207 47 96 chr1 112836811 112836864 -169356800 - MLT1F1 LTR MaLR -12 555 501 2070 125 3 14 chr1 112836864 112837159 -169356505 + AluSq SINE Alu 1 292 -21 1847 207 47 96 chr1 112837159 112837495 -169356169 - MLT1F1 LTR MaLR -66 501 182 2302 88 3 3 chr1 112837495 112837790 -169355874 - AluSc SINE Alu -14 295 1 1847 207 47 96 chr1 112837790 112837964 -169355700 - MLT1F1 LTR MaLR -385 182 1 3648 259 91 23 chr1 112838004 112839150 -169354514 + ERVL LTR ERVL 3314 4537 -1227 305 217 113 19 chr1 112839192 112839298 -169354366 + L1ME4a LINE L1 5964 6079 -42 1919 136 48 14 chr1 112839399 112839693 -169353971 + AluSx SINE Alu 1 304 -8 1496 179 24 28 chr1 112839725 112840016 -169353648 - AluJo SINE Alu -22 290 1 330 273 62 88 chr1 112840113 112840307 -169353357 - MER5A DNA MER1_type 0 189 1 659 113 48 0 chr1 112841661 112841785 -169351879 + MSTA LTR MaLR 1 130 -298 2033 136 58 53 chr1 112841891 112842267 -169351397 - MER83B LTR ERV1 0 378 1 2876 150 107 57 chr1 112842267 112842921 -169350743 - L1MC1 LINE L1 -273 6060 5377 339 25 0 0 chr1 112842995 112843035 -169350629 + (CATAT)n Simple_repeat Simple_repeat 4 43 0 843 251 79 13 chr1 112843513 112843816 -169349848 + L1ME3A LINE L1 2677 2999 -3147 405 194 11 21 chr1 112843818 112843911 -169349753 + L1ME3A LINE L1 5381 5472 -698 1312 212 0 4 chr1 112843912 112844157 -169349507 - AluJo SINE Alu -17 295 52 1201 216 70 59 chr1 112844256 112844956 -169348708 - MER52A LTR ERV1 -300 1232 281 1060 144 104 6 chr1 112844958 112845131 -169348533 - AluJb SINE Alu -122 190 1 925 330 31 9 chr1 112845163 112845609 -169348055 + L1ME3A LINE L1 5495 5950 -220 1331 238 26 42 chr1 112845726 112846228 -169347436 + L1MEc LINE L1 2109 2562 -3653 214 247 11 32 chr1 112846315 112846348 -169347316 + (TATG)n Simple_repeat Simple_repeat 2 34 -58 1860 159 20 92 chr1 112846348 112846739 -169346925 + MLT1A1 LTR MaLR 1 363 -2 214 247 11 32 chr1 112846739 112846798 -169346866 + (TATG)n Simple_repeat Simple_repeat 34 92 0 * 219 155 35 17 chr1 112846751 112846809 -169346855 + (TA)n Simple_repeat Simple_repeat 2 60 0 2609 154 36 24 chr1 112847355 112847409 -169346255 + MSTB LTR MaLR 1 53 -373 2206 109 0 0 chr1 112847409 112847714 -169345950 + AluSg SINE Alu 1 310 0 2609 154 36 24 chr1 112847714 112848080 -169345584 + MSTB LTR MaLR 53 426 0 9824 169 32 6 chr1 112848080 112849689 -169343975 + MSTB-int LTR MaLR 1 1651 0 2036 182 127 3 chr1 112849689 112850068 -169343596 + MSTB LTR MaLR 1 426 0 240 35 0 0 chr1 112850435 112850464 -169343200 + (TG)n Simple_repeat Simple_repeat 2 30 0 2261 71 3 3 chr1 112850506 112850822 -169342842 + AluY SINE Alu 1 316 0 429 121 0 132 chr1 112850824 112850915 -169342749 - FLAM_A SINE Alu -26 116 38 265 355 36 0 chr1 112851916 112852026 -169341638 + L3 LINE CR1 633 746 -831 1386 187 127 4 chr1 112852485 112852632 -169341032 - AluJo SINE Alu -1 301 173 198 0 0 0 chr1 112852632 112852654 -169341010 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1386 187 127 4 chr1 112852654 112852774 -169340890 - AluJo SINE Alu -129 173 1 181 268 146 49 chr1 112852817 112852899 -169340765 - L2 LINE L2 -1 3312 3223 642 175 105 7 chr1 112853067 112853210 -169340454 + MER20 DNA MER1_type 1 157 -62 826 283 51 0 chr1 112853460 112853697 -169339967 - MIR SINE MIR -2 260 12 1886 166 0 10 chr1 112854631 112854927 -169338737 + AluJo SINE Alu 1 293 -19 1097 128 2 10 chr1 112855045 112855277 -169338387 + (TTCC)n Simple_repeat Simple_repeat 1 410 0 2304 107 0 0 chr1 112855806 112856104 -169337560 - AluSx SINE Alu -14 298 1 396 0 0 0 chr1 112856384 112856428 -169337236 + (TG)n Simple_repeat Simple_repeat 1 44 0 1707 160 7 47 chr1 112856429 112856729 -169336935 - AluJb SINE Alu -23 289 2 216 333 0 0 chr1 112856758 112856818 -169336846 + L2 LINE L2 2852 2911 -361 1114 283 55 31 chr1 112857345 112857766 -169335898 + L2 LINE L2 2883 3313 0 621 294 107 63 chr1 112857965 112858517 -169335147 - MLT1K LTR MaLR -8 580 5 202 341 65 7 chr1 112858663 112858801 -169334863 + L2 LINE L2 1337 1482 -1832 264 284 0 25 chr1 112858857 112858938 -169334726 + MER58A DNA MER1_type 37 115 0 25 51 0 0 chr1 112859106 112859145 -169334519 + AT_rich Low_complexity Low_complexity 1 39 0 2099 134 7 0 chr1 112861276 112861575 -169332089 - AluSx SINE Alu -11 301 1 1659 192 3 23 chr1 112861603 112861905 -169331759 + AluJo SINE Alu 3 298 -14 3808 237 100 52 chr1 112862043 112862480 -169331184 - L2 LINE L2 -15 3298 2883 2165 110 0 7 chr1 112862480 112862771 -169330893 + AluSx SINE Alu 1 289 -23 3808 237 100 52 chr1 112862771 112863550 -169330114 - L2 LINE L2 -430 2883 1968 1109 186 207 37 chr1 112863550 112863792 -169329872 + AluJo SINE Alu 2 284 -18 3808 237 100 52 chr1 112863792 112864022 -169329642 - L2 LINE L2 -1345 1968 1750 654 227 126 13 chr1 112864119 112864456 -169329208 + LTR16C LTR ERVL 71 477 -14 197 73 0 49 chr1 112864462 112864503 -169329161 + (TTAAA)n Simple_repeat Simple_repeat 1 39 0 490 222 0 11 chr1 112864715 112864805 -169328859 + MER21B LTR ERV1 1 89 -774 3903 151 47 21 chr1 112864819 112865500 -169328164 + MER50 LTR ERV1 13 711 -23 250 204 0 0 chr1 112865501 112865545 -169328119 + MER50-int LTR ERV1 1 44 -7161 1811 246 63 15 chr1 112865588 112866051 -169327613 + MER21B LTR ERV1 103 587 -276 4923 132 49 46 chr1 112866053 112866375 -169327289 - MER4D LTR ERV1 0 903 584 2265 97 13 0 chr1 112866375 112866674 -169326990 + AluSp SINE Alu 5 307 -6 4923 132 49 46 chr1 112866674 112867246 -169326418 - MER4D LTR ERV1 -319 584 6 577 180 20 10 chr1 112867246 112867346 -169326318 + MER21B LTR ERV1 604 704 -159 258 287 53 21 chr1 112867382 112867476 -169326188 + MER21B LTR ERV1 698 794 -69 1570 168 22 62 chr1 112867986 112868308 -169325356 + AluJo SINE Alu 1 309 -3 1914 27 0 0 chr1 112868476 112868696 -169324968 - L1PA4 LINE L1 -256 5899 5680 2302 31 0 0 chr1 112868696 112868953 -169324711 + L1PA4 LINE L1 5897 6153 -2 853 297 44 0 chr1 112869105 112869334 -169324330 - MIR SINE MIR -21 241 3 298 350 123 41 chr1 112869377 112869743 -169323921 + L2 LINE L2 2229 2624 -690 864 177 111 17 chr1 112869831 112870012 -169323652 - MSTD LTR MaLR 0 396 199 767 105 94 117 chr1 112870037 112870208 -169323456 - THE1C LTR MaLR 0 375 209 320 309 114 20 chr1 112870499 112870631 -169323033 - L2 LINE L2 -691 2623 2505 2057 136 7 0 chr1 112870631 112870925 -169322739 - AluSx SINE Alu -16 296 1 320 309 114 20 chr1 112870925 112871038 -169322626 - L2 LINE L2 -809 2505 2355 22 0 0 0 chr1 112871573 112871595 -169322069 + AT_rich Low_complexity Low_complexity 1 22 0 2381 97 0 0 chr1 112871601 112871909 -169321755 - AluSq SINE Alu -5 308 1 662 157 26 9 chr1 112872314 112872429 -169321235 + Tigger2 DNA MER2_type 1 117 -2601 * 728 183 183 16 chr1 112872425 112872611 -169321053 + Tigger2 DNA MER2_type 2492 2708 -10 421 333 87 52 chr1 112872745 112873147 -169320517 + L2 LINE L2 2857 3272 0 29 28 0 0 chr1 112873963 112873999 -169319665 + AT_rich Low_complexity Low_complexity 1 36 0 297 106 21 0 chr1 112874339 112874386 -169319278 + MIR SINE MIR 123 170 -92 2126 106 0 3 chr1 112874537 112874853 -169318811 + AluSg SINE Alu 1 315 0 1623 191 7 17 chr1 112874998 112875297 -169318367 + AluJo SINE Alu 5 300 -12 279 0 0 0 chr1 112876534 112876565 -169317099 + (TG)n Simple_repeat Simple_repeat 1 31 0 213 200 0 0 chr1 112876605 112876645 -169317019 + GA-rich Low_complexity Low_complexity 1 40 0 206 267 0 27 chr1 112876956 112877031 -169316633 + G-rich Low_complexity Low_complexity 5 77 0 218 346 116 49 chr1 112880392 112880721 -169312943 - L2 LINE L2 -106 3166 2816 865 255 72 5 chr1 112880834 112881042 -169312622 - MIR SINE MIR -10 252 31 2360 93 0 19 chr1 112881133 112881443 -169312221 + AluSg SINE Alu 1 304 -6 363 273 131 46 chr1 112881443 112881703 -169311961 - L2 LINE L2 -703 2611 2330 739 118 215 14 chr1 112882186 112882330 -169311334 + FAM SINE Alu 1 48 -1 883 191 53 45 chr1 112883898 112883912 -169309752 - MIR SINE MIR 0 262 250 207 100 0 0 chr1 112883912 112883942 -169309722 + (CAG)n Simple_repeat Simple_repeat 2 31 0 883 191 53 45 chr1 112883942 112884173 -169309491 - MIR SINE MIR -12 250 15 2195 110 3 19 chr1 112884694 112885011 -169308653 - AluSx SINE Alu 0 312 1 210 105 0 0 chr1 112885466 112885504 -169308160 + (A)n Simple_repeat Simple_repeat 1 38 0 482 244 26 9 chr1 112885836 112885951 -169307713 + L2 LINE L2 3156 3272 0 285 255 90 45 chr1 112886750 112886950 -169306714 - L1ME4a LINE L1 -199 5922 5714 3033 157 20 58 chr1 112887164 112887800 -169305864 - LTR9 LTR ERV1 0 612 1 28 0 0 0 chr1 112887980 112888008 -169305656 + AT_rich Low_complexity Low_complexity 1 28 0 1433 174 106 0 chr1 112888239 112888503 -169305161 + AluJb SINE Alu 1 292 -20 2353 71 3 26 chr1 112888566 112888876 -169304788 - AluSc SINE Alu -6 303 1 411 307 100 0 chr1 112889832 112889972 -169303692 - MIR3 SINE MIR -23 185 32 324 0 0 0 chr1 112890307 112890343 -169303321 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 233 23 0 chr1 112890408 112890451 -169303213 + L2 LINE L2 3138 3181 -91 217 185 74 0 chr1 112890637 112890691 -169302973 + L2 LINE L2 3256 3313 0 23 0 0 0 chr1 112891863 112891886 -169301778 + AT_rich Low_complexity Low_complexity 1 23 0 514 186 150 14 chr1 112892577 112892717 -169300947 + MER3 DNA MER1_type 51 209 0 6231 185 44 14 chr1 112892957 112893435 -169300229 - L1PA16 LINE L1 -9 6157 5695 2081 64 9 109 chr1 112893435 112893764 -169299900 - AluSx SINE Alu -8 304 9 6231 185 44 14 chr1 112893764 112894195 -169299469 - L1PA16 LINE L1 -471 5695 5278 1562 147 63 70 chr1 112894195 112894356 -169299308 - AluJo SINE Alu -15 297 137 1952 150 3 3 chr1 112894356 112894649 -169299015 - AluJo SINE Alu -19 293 1 1562 147 63 70 chr1 112894649 112894786 -169298878 - AluJo SINE Alu -175 137 1 6231 185 44 14 chr1 112894786 112896076 -169297588 - L1PA16 LINE L1 -888 5278 3729 4862 115 32 41 chr1 112896310 112897147 -169296517 - Tigger1 DNA MER2_type 0 2418 1589 * 5485 116 18 1 chr1 112897146 112897975 -169295689 - Tigger1 DNA MER2_type -1574 844 2 6472 23 0 1 chr1 112898169 112898917 -169294747 - L1PA3 LINE L1 0 6155 5409 246 352 82 27 chr1 112899455 112899674 -169293990 - L2 LINE L2 -210 3062 2832 6655 42 0 5 chr1 112899860 112900665 -169292999 + L1PA5 LINE L1 5339 6139 -15 2190 92 3 23 chr1 112901402 112901705 -169291959 - AluSp SINE Alu -16 297 1 497 125 0 0 chr1 112903049 112903129 -169290535 + MADE1 DNA Mariner 1 80 0 260 238 50 73 chr1 112903914 112904010 -169289654 + MIR SINE MIR 99 194 -68 2179 151 91 5 chr1 112904010 112904408 -169289256 - MSTB1 LTR MaLR 0 432 1 260 238 50 73 chr1 112904408 112904451 -169289213 + MIR SINE MIR 194 236 -26 426 345 102 50 chr1 112905171 112905513 -169288151 + L2 LINE L2 2889 3248 -24 197 322 140 42 chr1 112905509 112905795 -169287869 + L2 LINE L2 1703 2016 -1298 * 1573 188 0 67 chr1 112906574 112906903 -169286761 - AluJo SINE Alu -5 307 1 259 308 112 20 chr1 112909022 112909272 -169284392 + Charlie8 DNA MER1_type 1 266 -2151 937 159 73 0 chr1 112909628 112909779 -169283885 + MER5A DNA MER1_type 2 163 -26 2013 134 0 0 chr1 112910273 112910548 -169283116 + AluSx SINE Alu 24 298 -14 1104 151 0 0 chr1 112910902 112911061 -169282603 + AluSx SINE Alu 24 182 -130 22 56 0 0 chr1 112912046 112912082 -169281582 + AT_rich Low_complexity Low_complexity 1 36 0 616 193 7 15 chr1 112912958 112913093 -169280571 - AluJ SINE Alu 0 312 179 * 625 221 16 0 chr1 112913092 112913214 -169280450 - AluJ SINE Alu -188 124 1 2080 132 3 23 chr1 112913256 112913566 -169280098 + AluJb SINE Alu 1 304 -8 1641 88 28 0 chr1 112913611 112913826 -169279838 + AluSg/x SINE Alu 73 293 -19 210 71 0 0 chr1 112913826 112913854 -169279810 + (TA)n Simple_repeat Simple_repeat 2 29 0 269 250 50 0 chr1 112914436 112914496 -169279168 + L2 LINE L2 3210 3272 0 366 250 0 45 chr1 112916395 112916483 -169277181 + MIR3 SINE MIR 102 185 -23 187 257 0 0 chr1 112916880 112916915 -169276749 + MIR SINE MIR 204 238 -24 1949 78 43 0 chr1 112918045 112918302 -169275362 + AluSc SINE Alu 9 276 -33 23 0 0 0 chr1 112918318 112918341 -169275323 + AT_rich Low_complexity Low_complexity 1 23 0 630 194 7 21 chr1 112918471 112918640 -169275024 - FRAM SINE Alu 0 171 5 393 308 45 0 chr1 112918798 112918954 -169274710 + L2 LINE L2 2678 2840 -474 212 215 76 63 chr1 112919851 112919930 -169273734 - L3 LINE CR1 -20 1557 1478 * 289 294 92 8 chr1 112919920 112920039 -169273625 + L2 LINE L2 3185 3313 0 224 343 14 14 chr1 112920056 112920129 -169273535 - L3 LINE CR1 -88 1489 1417 1330 203 72 24 chr1 112920138 112920429 -169273235 + AluJo SINE Alu 3 307 -5 620 160 61 66 chr1 112920485 112920698 -169272966 - MER33 DNA MER1_type 0 324 113 472 141 293 0 chr1 112920698 112920797 -169272867 - FLAM_C SINE Alu -15 128 1 574 224 8 0 chr1 112920797 112920922 -169272742 - MER33 DNA MER1_type -198 126 1 779 196 86 18 chr1 112921444 112921607 -169272057 - FRAM SINE Alu -2 174 1 290 295 134 9 chr1 112921872 112921984 -169271680 + MIR SINE MIR 114 239 -23 291 376 72 8 chr1 112922020 112922145 -169271519 + L2 LINE L2 3137 3269 -3 2198 105 3 7 chr1 112922372 112922666 -169270998 + AluSg SINE Alu 1 293 -17 2004 143 0 7 chr1 112923783 112924084 -169269580 - AluSx SINE Alu -13 299 1 488 241 128 20 chr1 112926044 112926239 -169267425 - MIR SINE MIR -12 250 35 189 74 0 0 chr1 112926365 112926392 -169267272 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 855 161 0 0 chr1 112926666 112926796 -169266868 + FLAM_C SINE Alu 2 131 -2 368 317 60 52 chr1 112927389 112927588 -169266076 - L1MC4a LINE L1 -154 5967 5762 1657 161 25 44 chr1 112927588 112927905 -169265759 - AluJo SINE Alu -1 311 1 368 317 60 52 chr1 112927905 112927955 -169265709 - L1MC4a LINE L1 -359 5762 5714 523 310 88 13 chr1 112928188 112928414 -169265250 - MIR SINE MIR 0 262 20 348 24 0 0 chr1 112929229 112929270 -169264394 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 43 0 0 chr1 112929269 112929292 -169264372 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 446 336 37 28 chr1 112929376 112929590 -169264074 + MIR SINE MIR 46 261 -1 244 354 10 0 chr1 112929688 112929784 -169263880 + MIR3 SINE MIR 93 189 -19 491 258 253 16 chr1 112930150 112930344 -169263320 + MIR SINE MIR 23 262 0 277 253 145 0 chr1 112931022 112931105 -169262559 - LTR67 LTR ERVL -37 520 426 382 251 115 11 chr1 112931110 112931301 -169262363 - LTR33A LTR ERVL -9 514 304 256 263 163 31 chr1 112931340 112931500 -169262164 - LTR50 LTR ERVL -589 206 26 22 0 0 0 chr1 112931545 112931567 -169262097 + GC_rich Low_complexity Low_complexity 1 22 0 383 207 128 55 chr1 112931677 112931717 -169261947 - L1MC4a LINE L1 -614 5548 5512 2050 130 0 7 chr1 112931717 112932016 -169261648 - AluSx SINE Alu -15 297 1 383 207 128 55 chr1 112932016 112932139 -169261525 - L1MC4a LINE L1 -650 5512 5373 2022 141 3 0 chr1 112932142 112932446 -169261218 - AluSx SINE Alu -2 310 6 183 336 55 18 chr1 112932466 112932576 -169261088 - MIR SINE MIR 0 262 149 561 134 0 0 chr1 112933094 112933176 -169260488 - AluSc SINE Alu -226 83 2 210 204 20 0 chr1 112933718 112933767 -169259897 - MIR3 SINE MIR -7 201 152 529 270 89 37 chr1 112934462 112934732 -169258932 + L3 LINE CR1 1050 1333 -244 2039 124 3 10 chr1 112934866 112935165 -169258499 + AluSx SINE Alu 1 297 -15 856 134 5 108 chr1 112935598 112935784 -169257880 - AluSg/x SINE Alu -12 300 134 1586 99 145 34 chr1 112935784 112935905 -169257759 - AluSx SINE Alu -21 291 185 2118 115 0 10 chr1 112935905 112936209 -169257455 - AluSq SINE Alu -10 303 3 1586 99 145 34 chr1 112936209 112936349 -169257315 - AluSx SINE Alu -127 185 1 1823 148 3 10 chr1 112936868 112937179 -169256485 + AluSx SINE Alu 1 309 -3 1356 197 4 14 chr1 112937441 112937720 -169255944 - AluJo SINE Alu -36 276 1 309 198 0 125 chr1 112938461 112938557 -169255107 + MIR SINE MIR 106 189 -73 * 1352 310 127 22 chr1 112938551 112939426 -169254238 + L2 LINE L2 2279 3246 -67 245 263 0 0 chr1 112939671 112939728 -169253936 + L2 LINE L2 3257 3313 0 524 176 19 0 chr1 112939975 112940083 -169253581 - L1MB3 LINE L1 -2 6181 6072 187 316 11 32 chr1 112940144 112940239 -169253425 + MIR SINE MIR 96 188 -74 1305 68 182 0 chr1 112940258 112940450 -169253214 - MER30 DNA MER1_type 0 230 4 218 336 28 35 chr1 112940895 112941038 -169252626 + L3b LINE CR1 1150 1291 -292 479 267 102 47 chr1 112941284 112941520 -169252144 + MIR SINE MIR 7 255 -7 224 254 119 60 chr1 112941853 112941987 -169251677 - L2 LINE L2 0 3313 3172 216 303 112 11 chr1 112942027 112942116 -169251548 - L2 LINE L2 -4 3309 3212 35 0 0 0 chr1 112942288 112942323 -169251341 + AT_rich Low_complexity Low_complexity 1 35 0 341 302 163 28 chr1 112942712 112942964 -169250700 - L1ME LINE L1 -516 5605 5320 887 145 92 0 chr1 112943020 112943172 -169250492 + FRAM SINE Alu 1 160 -16 273 29 0 0 chr1 112944424 112944459 -169249205 - MADE1 DNA Mariner 0 80 46 493 265 152 0 chr1 112944513 112944645 -169249019 + L2 LINE L2 3160 3311 -2 2340 75 10 0 chr1 112945060 112945355 -169248309 + AluSp SINE Alu 1 298 -15 388 256 68 8 chr1 112945924 112946041 -169247623 - MIR3 SINE MIR -52 156 33 849 208 64 60 chr1 112946431 112946681 -169246983 + MER112 DNA MER1_type 1 251 -9 23 33 0 0 chr1 112947270 112947300 -169246364 + AT_rich Low_complexity Low_complexity 1 30 0 622 64 0 0 chr1 112947429 112947507 -169246157 + AluY SINE Alu 217 294 -17 2323 65 0 0 chr1 112947857 112948170 -169245494 + AluY SINE Alu 6 318 0 7655 138 2 11 chr1 112948681 112949945 -169243719 - L1PA11 LINE L1 0 6174 4907 2207 122 3 10 chr1 112949945 112950256 -169243408 + AluSq SINE Alu 1 309 -4 7655 138 2 11 chr1 112950256 112951058 -169242606 - L1PA11 LINE L1 -1267 4907 4100 180 241 0 0 chr1 112951071 112951100 -169242564 + L2 LINE L2 3201 3229 -43 23 0 0 0 chr1 112951107 112951130 -169242534 + AT_rich Low_complexity Low_complexity 1 23 0 254 103 35 17 chr1 112951130 112951188 -169242476 - L1MA5A LINE L1 0 6297 6239 5542 106 5 2 chr1 112951226 112952067 -169241597 - L1PA13 LINE L1 -13 6150 5308 1314 134 20 29 chr1 112952054 112952300 -169241364 - L1MA5A LINE L1 -45 6252 6009 * 2205 128 73 14 chr1 112952300 112952644 -169241020 - THE1B LTR MaLR 0 364 1 2655 79 0 0 chr1 112952644 112953000 -169240664 - THE1B-int LTR MaLR 0 1580 1225 1357 175 0 9 chr1 112953319 112953536 -169240128 + AluJo SINE Alu 89 303 -9 2023 91 25 7 chr1 112953633 112953918 -169239746 - AluSg SINE Alu -20 290 1 610 333 204 13 chr1 112954997 112955369 -169238295 - L2 LINE L2 0 3272 2830 535 42 42 10 chr1 112955998 112956094 -169237570 + (TA)n Simple_repeat Simple_repeat 1 99 0 974 102 29 0 chr1 112956242 112956379 -169237285 + AluSp/q SINE Alu 167 307 -6 21 0 0 0 chr1 112956768 112956789 -169236875 + AT_rich Low_complexity Low_complexity 1 21 0 830 127 8 0 chr1 112957485 112957603 -169236061 + FLAM_C SINE Alu 1 119 -24 191 59 0 29 chr1 112957606 112957640 -169236024 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 527 222 7 52 chr1 112960041 112960176 -169233488 - MIR SINE MIR -29 233 105 294 343 71 21 chr1 112960263 112960403 -169233261 - L2 LINE L2 -19 3294 3148 572 220 92 12 chr1 112961338 112961511 -169232153 + MIR SINE MIR 76 262 0 200 375 113 0 chr1 112961597 112961765 -169231899 - L2 LINE L2 -221 3051 2865 238 258 66 78 chr1 112962015 112962182 -169231482 + MER69A DNA AcHobo 11 175 -2 1916 153 0 3 chr1 112962204 112962505 -169231159 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr1 112963293 112963314 -169230350 + AT_rich Low_complexity Low_complexity 1 21 0 241 281 34 0 chr1 112963317 112963406 -169230258 - L1MC4 LINE L1 -1339 6703 6612 225 0 0 0 chr1 112963422 112963447 -169230217 + (T)n Simple_repeat Simple_repeat 1 25 0 273 216 150 26 chr1 112963918 112964071 -169229593 - MER113 DNA MER1_type? -349 172 1 478 272 210 30 chr1 112966411 112966857 -169226807 + L2 LINE L2 2763 3291 -22 2021 143 0 0 chr1 112968186 112968479 -169225185 + AluJb SINE Alu 1 293 -19 203 250 42 83 chr1 112968687 112968783 -169224881 + L2 LINE L2 3222 3313 0 509 221 0 87 chr1 112969153 112969302 -169224362 + MIR SINE MIR 8 143 -119 211 247 13 13 chr1 112969368 112969445 -169224219 + (TTA)n Simple_repeat Simple_repeat 2 78 0 1607 172 45 0 chr1 112969445 112969712 -169223952 - AluSx SINE Alu -33 279 1 235 218 30 59 chr1 112969855 112969956 -169223708 - L1MC4a LINE L1 -1634 6174 6077 27 0 0 0 chr1 112970566 112970593 -169223071 + AT_rich Low_complexity Low_complexity 1 27 0 193 367 18 0 chr1 112970988 112971097 -169222567 - L2 LINE L2 -13 3259 3149 2061 90 25 11 chr1 112972226 112972505 -169221159 + AluSx SINE Alu 1 283 -29 595 247 53 24 chr1 112972810 112972980 -169220684 - MER5B DNA MER1_type -3 175 1 394 101 20 30 chr1 112973004 112973103 -169220561 + (TA)n Simple_repeat Simple_repeat 2 99 0 358 242 0 20 chr1 112973122 112973221 -169220443 - MER103 DNA DNA -46 120 24 444 195 168 9 chr1 112973225 112973338 -169220326 - FLAM_A SINE Alu -2 131 1 1564 180 49 33 chr1 112974875 112975181 -169218483 + AluJo SINE Alu 1 311 -1 574 224 8 0 chr1 112975703 112975828 -169217836 + MER33 DNA MER1_type 1 126 -198 472 141 293 0 chr1 112975828 112975927 -169217737 + FLAM_C SINE Alu 1 128 -15 620 160 61 66 chr1 112975927 112976140 -169217524 + MER33 DNA MER1_type 113 324 0 1330 203 72 24 chr1 112976196 112976487 -169217177 - AluJo SINE Alu -5 307 3 224 343 14 14 chr1 112976496 112976569 -169217095 + L3 LINE CR1 1417 1489 -88 289 294 92 8 chr1 112976586 112976705 -169216959 - L2 LINE L2 0 3313 3185 212 215 76 63 chr1 112976695 112976774 -169216890 + L3 LINE CR1 1478 1557 -20 * 839 291 187 39 chr1 112977647 112978241 -169215423 - L2 LINE L2 -453 2861 2116 755 251 16 5 chr1 112978241 112978428 -169215236 + MER5A DNA MER1_type 1 189 0 839 291 187 39 chr1 112978428 112978634 -169215030 - L2 LINE L2 -1198 2116 1942 1031 173 30 5 chr1 112978655 112978852 -169214812 + L1MB7 LINE L1 5932 6133 -51 2087 98 30 0 chr1 112978859 112979154 -169214510 + AluSq SINE Alu 1 304 -9 331 286 36 60 chr1 112979159 112979327 -169214337 - L2 LINE L2 -1524 1790 1627 216 297 0 103 chr1 112979348 112979523 -169214141 - L3 LINE CR1 -11 1566 1410 895 196 111 73 chr1 112979585 112979722 -169213942 - HAL1 LINE L1 -2115 392 262 2189 119 7 3 chr1 112979722 112980025 -169213639 - AluSq SINE Alu -9 304 1 895 196 111 73 chr1 112980025 112980203 -169213461 - HAL1 LINE L1 -2245 262 59 1841 158 0 10 chr1 112980203 112980501 -169213163 + AluJb SINE Alu 1 295 -17 895 196 111 73 chr1 112980501 112980552 -169213112 - HAL1 LINE L1 -2448 59 11 188 175 254 0 chr1 112980712 112980775 -169212889 + MIR SINE MIR 170 248 -14 282 398 24 0 chr1 112980828 112980994 -169212670 - L3 LINE CR1 -763 814 645 29 47 0 0 chr1 112981164 112981207 -169212457 + AT_rich Low_complexity Low_complexity 1 43 0 1124 198 113 56 chr1 112981229 112981708 -169211956 + Charlie4a DNA MER1_type 1 506 -2 223 368 23 60 chr1 112982679 112982812 -169210852 - L3 LINE CR1 -79 1498 1371 * 804 281 12 28 chr1 112982779 112983028 -169210636 - MIR SINE MIR 0 262 18 649 149 19 0 chr1 112983662 112983769 -169209895 + MER5A DNA MER1_type 78 186 -3 508 294 10 36 chr1 112985022 112985216 -169208448 - MER5A DNA MER1_type 0 189 1 419 67 50 34 chr1 112985590 112985709 -169207955 + (TA)n Simple_repeat Simple_repeat 2 122 0 1910 157 3 3 chr1 112986635 112986935 -169206729 - AluJb SINE Alu -12 300 1 182 341 11 44 chr1 112987798 112987889 -169205775 + L2 LINE L2 2825 2912 -401 235 240 50 58 chr1 112988129 112988250 -169205414 + L1M4 LINE L1 4501 4620 -1526 714 180 51 67 chr1 112988560 112988738 -169204926 + MER69A DNA AcHobo 1 175 -2 720 144 51 98 chr1 112989874 112989986 -169203678 - MER33 DNA MER1_type -2375 210 111 1942 157 0 3 chr1 112989986 112990298 -169203366 - AluJb SINE Alu -1 311 1 720 144 51 98 chr1 112990298 112990400 -169203264 - MER33 DNA MER1_type -2474 111 6 236 323 110 58 chr1 112992560 112992870 -169200794 + L2 LINE L2 2652 2977 -337 238 307 93 43 chr1 112992951 112993091 -169200573 + L2 LINE L2 3125 3271 -1 211 315 173 25 chr1 112994163 112994487 -169199177 + L2 LINE L2 1868 2239 -1075 294 295 134 9 chr1 112995029 112995141 -169198523 + MIR SINE MIR 114 239 -23 294 376 72 8 chr1 112995177 112995302 -169198362 + L2 LINE L2 3137 3269 -3 2181 105 3 7 chr1 112995529 112995823 -169197841 + AluSg SINE Alu 1 293 -17 1995 143 0 7 chr1 112996942 112997243 -169196421 - AluSx SINE Alu -13 299 1 234 296 153 31 chr1 112997915 112998111 -169195553 + Charlie8 DNA MER1_type 2 221 -2196 486 241 128 20 chr1 112999204 112999399 -169194265 - MIR SINE MIR -12 250 35 189 74 0 0 chr1 112999525 112999552 -169194112 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 849 161 0 0 chr1 112999826 112999956 -169193708 + FLAM_C SINE Alu 2 131 -2 367 304 63 71 chr1 113000549 113000752 -169192912 - L1MC4a LINE L1 -154 5967 5763 1616 166 26 38 chr1 113000752 113001065 -169192599 - AluJo SINE Alu -3 309 1 367 304 63 71 chr1 113001065 113001115 -169192549 - L1MC4a LINE L1 -358 5763 5714 519 310 88 13 chr1 113001348 113001574 -169192090 - MIR SINE MIR 0 262 20 384 22 0 0 chr1 113002389 113002434 -169191230 + (CA)n Simple_repeat Simple_repeat 2 46 0 436 336 37 28 chr1 113002538 113002752 -169190912 + MIR SINE MIR 46 261 -1 245 354 10 0 chr1 113002850 113002946 -169190718 + MIR3 SINE MIR 93 189 -19 488 258 253 16 chr1 113003312 113003506 -169190158 + MIR SINE MIR 23 262 0 305 253 145 0 chr1 113004184 113004267 -169189397 - LTR67 LTR ERVL -37 520 426 439 245 159 39 chr1 113004272 113004666 -169188998 - LTR33A LTR ERVL -9 514 24 1256 133 96 7 chr1 113005121 113005391 -169188273 - L1MA8 LINE L1 -6 6285 5992 213 231 231 0 chr1 113005392 113005496 -169188168 + MIR SINE MIR 120 247 -15 604 141 0 58 chr1 113006839 113006960 -169186704 + MER53 DNA DNA 1 114 -75 24 32 0 0 chr1 113008175 113008206 -169185458 + AT_rich Low_complexity Low_complexity 1 31 0 1659 123 20 115 chr1 113008215 113008564 -169185100 - AluYb8 SINE Alu 0 318 3 2364 88 3 0 chr1 113009892 113010197 -169183467 + AluSp SINE Alu 1 306 -7 711 147 105 7 chr1 113010268 113010411 -169183253 + MER106B DNA MER1_type 903 1059 0 557 178 158 7 chr1 113010411 113010552 -169183112 + MER104 DNA Tc2 14 176 -4 186 189 0 0 chr1 113010700 113010737 -169182927 + (CA)n Simple_repeat Simple_repeat 2 38 0 286 184 20 0 chr1 113011881 113011930 -169181734 + MIR SINE MIR 42 91 -117 217 234 0 0 chr1 113011945 113011992 -169181672 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 956 118 7 7 chr1 113012225 113012361 -169181303 - AluJo SINE Alu -176 136 1 22 56 0 0 chr1 113012392 113012428 -169181236 + AT_rich Low_complexity Low_complexity 1 36 0 393 162 121 0 chr1 113013257 113013356 -169180308 + L1M LINE L1 5267 5377 -797 * 1273 223 75 3 chr1 113013348 113013767 -169179897 + L1M4 LINE L1 3701 4167 -1979 228 246 0 0 chr1 113013770 113013827 -169179837 + L1M4 LINE L1 4265 4321 -1825 2680 219 97 24 chr1 113013872 113014657 -169179007 + L1ME2 LINE L1 5237 6078 -86 323 279 117 28 chr1 113014662 113014841 -169178823 + L1M4 LINE L1 4319 4513 -1633 1384 276 65 12 chr1 113014853 113015534 -169178130 + L1M4 LINE L1 4696 5411 -753 375 235 280 10 chr1 113015556 113015756 -169177908 - L1ME LINE L1 -507 6051 5798 6214 235 64 22 chr1 113015762 113016677 -169176987 - L1ME LINE L1 -870 5670 4795 2294 102 0 3 chr1 113016677 113016990 -169176674 - AluSq SINE Alu -1 312 1 6214 235 64 22 chr1 113016990 113018143 -169175521 - L1ME LINE L1 -1745 4795 3515 5036 204 129 48 chr1 113018147 113019474 -169174190 - L1ME LINE L1 -4818 1722 248 2002 130 21 0 chr1 113019474 113019759 -169173905 + AluSx SINE Alu 1 291 -21 5036 204 129 48 chr1 113019759 113020001 -169173663 - L1ME LINE L1 -6292 248 27 2085 191 44 28 chr1 113020064 113020561 -169173103 + MLT1D LTR MaLR 1 505 0 566 225 166 0 chr1 113022156 113022307 -169171357 - MER5A DNA MER1_type 0 189 14 1101 131 33 33 chr1 113022583 113022797 -169170867 - L1PB3 LINE L1 -1 6153 5940 26 0 0 0 chr1 113022853 113022879 -169170785 + AT_rich Low_complexity Low_complexity 1 26 0 3788 150 19 13 chr1 113023281 113023956 -169169708 - L1MB4 LINE L1 -2 6178 5500 237 368 108 50 chr1 113025646 113025969 -169167695 + L2 LINE L2 2866 3207 -65 226 118 78 0 chr1 113026086 113026137 -169167527 + L1MC4 LINE L1 6615 6669 -1373 388 60 0 0 chr1 113026140 113026190 -169167474 - L1PA6 LINE L1 -9 6145 6096 3352 88 4 0 chr1 113026194 113026648 -169167016 - L1PA14 LINE L1 -304 5857 5402 180 0 0 0 chr1 113027566 113027586 -169166078 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 233 369 59 32 chr1 113028428 113028615 -169165049 - MIR3 SINE MIR 0 208 17 874 181 12 12 chr1 113028719 113028885 -169164779 + FRAM SINE Alu 1 166 0 1233 168 18 10 chr1 113029724 113030000 -169163664 - MLT1A1 LTR MaLR -1 364 1 1975 133 7 10 chr1 113030579 113030910 -169162754 + AluSx SINE Alu 1 312 0 660 301 52 5 chr1 113031518 113031731 -169161933 - MIR SINE MIR -26 236 14 303 269 85 23 chr1 113032179 113032309 -169161355 - L2 LINE L2 -540 2774 2637 209 264 99 0 chr1 113033870 113033961 -169159703 + L2 LINE L2 2577 2676 -638 572 270 141 41 chr1 113034083 113034715 -169158949 + L1ME4a LINE L1 5366 6056 -65 237 216 20 39 chr1 113034748 113034822 -169158842 + (TA)n Simple_repeat Simple_repeat 1 74 -26 234 0 0 0 chr1 113034822 113034848 -169158816 + (TC)n Simple_repeat Simple_repeat 1 26 0 237 216 20 39 chr1 113034848 113034875 -169158789 + (TA)n Simple_repeat Simple_repeat 74 100 0 2203 110 20 0 chr1 113034875 113035174 -169158490 - AluSx SINE Alu -7 305 1 882 269 159 35 chr1 113035539 113036143 -169157521 - HAL1 LINE L1 0 2507 1763 447 52 0 0 chr1 113036143 113036201 -169157463 + (TG)n Simple_repeat Simple_repeat 1 58 0 882 269 159 35 chr1 113036201 113036456 -169157208 - HAL1 LINE L1 -744 1763 1541 189 242 113 16 chr1 113037236 113037298 -169156366 - MIR3 SINE MIR -16 192 125 1276 54 0 22 chr1 113040223 113040407 -169153257 + (TTC)n Simple_repeat Simple_repeat 1 180 0 234 0 0 0 chr1 113042033 113042059 -169151605 + (CA)n Simple_repeat Simple_repeat 2 27 0 221 256 23 81 chr1 113042374 113042460 -169151204 - MER5A DNA MER1_type 0 189 109 287 289 56 11 chr1 113042639 113042729 -169150935 + MIR SINE MIR 52 145 -63 1894 175 14 8 chr1 113042738 113043093 -169150571 - MLT1A1 LTR MaLR 0 365 9 503 267 46 8 chr1 113043476 113043607 -169150057 - MIR SINE MIR -92 170 35 1100 194 9 22 chr1 113043612 113043834 -169149830 - MER20 DNA MER1_type 0 219 1 225 409 47 0 chr1 113045814 113045941 -169147723 - MIR3 SINE MIR -72 136 4 * 524 282 67 98 chr1 113045927 113046377 -169147287 - L2 LINE L2 -1 3271 2836 856 253 68 0 chr1 113046689 113046910 -169146754 + MIR SINE MIR 6 241 -21 1927 92 53 4 chr1 113049450 113049731 -169143933 + AluSx SINE Alu 1 295 -17 209 258 68 82 chr1 113050462 113050497 -169143167 - L2 LINE L2 -181 3091 3057 2730 119 9 35 chr1 113050497 113050932 -169142732 - MSTC LTR MaLR -4 424 1 209 258 68 82 chr1 113050932 113051175 -169142489 - L2 LINE L2 -215 3057 2817 458 325 14 14 chr1 113051535 113051744 -169141920 + MLT1J LTR MaLR 68 276 -235 827 162 136 0 chr1 113051776 113051930 -169141734 - MER5A DNA MER1_type -11 178 4 272 288 82 65 chr1 113051932 113052102 -169141562 + MLT1J2 LTR MaLR 256 428 -22 578 241 68 0 chr1 113052155 113052288 -169141376 + MIR SINE MIR 2 143 -119 1465 249 69 40 chr1 113052295 113052668 -169140996 + MER115 DNA AcHobo 125 521 -172 1369 173 63 32 chr1 113052668 113052952 -169140712 - AluJo SINE Alu -19 293 1 1465 249 69 40 chr1 113052952 113053127 -169140537 + MER115 DNA AcHobo 521 689 -4 226 247 54 32 chr1 113053244 113053337 -169140327 + MLT1J LTR MaLR 178 272 -239 431 274 0 26 chr1 113053443 113053596 -169140068 + L1M4 LINE L1 3724 3872 -2274 242 332 153 21 chr1 113053795 113054449 -169139215 - L2 LINE L2 -1011 2303 1564 336 264 143 0 chr1 113054516 113054607 -169139057 - L2 LINE L2 0 3313 3210 2926 144 47 6 chr1 113055908 113056442 -169137222 - L1MC1 LINE L1 0 6333 5778 252 0 0 0 chr1 113057457 113057485 -169136179 + (TC)n Simple_repeat Simple_repeat 1 28 0 472 252 113 18 chr1 113059636 113059858 -169133806 - MER115 DNA AcHobo -450 243 1 342 130 43 94 chr1 113060006 113060144 -169133520 + L1MC5 LINE L1 7787 7917 -44 219 342 111 0 chr1 113060187 113060304 -169133360 - MIR SINE MIR -128 134 5 212 337 56 0 chr1 113061356 113061445 -169132219 - L3b LINE CR1 -226 1357 1264 272 208 133 67 chr1 113061642 113061762 -169131902 - L1ME4a LINE L1 -37 6084 5957 267 79 0 0 chr1 113062044 113062082 -169131582 + (TG)n Simple_repeat Simple_repeat 1 38 0 7040 109 34 43 chr1 113062566 113063808 -169129856 + Tigger3b DNA MER2_type 1 1230 -1 439 329 67 53 chr1 113065139 113065364 -169128300 + L2 LINE L2 3044 3271 -1 396 115 0 0 chr1 113065658 113065719 -169127945 - MER58A DNA MER1_type -3 221 161 466 214 19 10 chr1 113065729 113065832 -169127832 - MER58A DNA MER1_type -3 104 1 2292 176 26 5 chr1 113066965 113067380 -169126284 - MSTB LTR MaLR -2 424 1 21 57 0 0 chr1 113067386 113067421 -169126243 + AT_rich Low_complexity Low_complexity 1 35 0 728 189 8 0 chr1 113068114 113068236 -169125428 + FLAM_C SINE Alu 1 123 -10 345 227 42 124 chr1 113068609 113068686 -169124978 - L1MEd LINE L1 -4862 1257 1175 896 129 0 0 chr1 113068686 113068818 -169124846 - FLAM_C SINE Alu 0 133 2 345 227 42 124 chr1 113068818 113068896 -169124768 - L1MEd LINE L1 -4944 1175 1092 1964 112 26 59 chr1 113068896 113069199 -169124465 - AluSx SINE Alu -19 293 1 345 227 42 124 chr1 113069199 113069492 -169124172 - L1MEd LINE L1 -5027 1092 845 216 135 0 0 chr1 113069493 113069530 -169124134 + (TA)n Simple_repeat Simple_repeat 2 38 0 7152 133 12 56 chr1 113069644 113069673 -169123991 + L1PA13 LINE L1 3903 3932 -2236 3464 114 5 22 chr1 113069673 113070225 -169123439 + L1PA14 LINE L1 5616 6158 -3 7152 133 12 56 chr1 113070225 113070562 -169123102 + L1PA13 LINE L1 3932 4282 -1886 2386 81 7 0 chr1 113070562 113070871 -169122793 + AluY SINE Alu 1 311 0 7152 133 12 56 chr1 113070871 113072513 -169121151 + L1PA13 LINE L1 4282 5811 -357 303 149 0 108 chr1 113072511 113072585 -169121079 + L1 LINE L1 4670 4735 -1411 * 2179 119 11 3 chr1 113072593 113072945 -169120719 + L1PA13 LINE L1 5809 6163 0 1532 147 28 34 chr1 113074253 113074580 -169119084 + L1MC2 LINE L1 6013 6337 -7 314 136 0 17 chr1 113075262 113075321 -169118343 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 182 267 0 67 chr1 113075342 113075402 -169118262 - MIR3 SINE MIR -45 163 108 3552 208 65 21 chr1 113076992 113078159 -169115505 + L1M4 LINE L1 4138 5354 -803 4486 177 38 63 chr1 113078356 113079422 -169114242 + L1MC2 LINE L1 5298 6335 -9 186 250 79 26 chr1 113081923 113081999 -169111665 + MIR SINE MIR 69 148 -114 183 129 0 0 chr1 113084178 113084209 -169109455 + (TC)n Simple_repeat Simple_repeat 2 32 0 197 310 17 0 chr1 113084427 113084485 -169109179 + L2 LINE L2 1942 2000 -1314 24 0 0 0 chr1 113084488 113084512 -169109152 + AT_rich Low_complexity Low_complexity 1 24 0 213 39 0 0 chr1 113084512 113084538 -169109126 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1138 138 29 11 chr1 113084539 113084713 -169108951 - AluJb SINE Alu -47 265 89 689 321 131 21 chr1 113085568 113086048 -169107616 + L2 LINE L2 1971 2503 -811 1410 192 9 44 chr1 113086051 113086390 -169107274 + THE1B LTR MaLR 1 327 -37 1184 126 6 6 chr1 113086516 113086691 -169106973 + THE1B LTR MaLR 190 364 0 436 325 16 0 chr1 113086691 113086817 -169106847 + L2 LINE L2 2502 2629 -685 735 268 32 41 chr1 113086854 113087100 -169106564 + MIR SINE MIR 8 251 -11 * 1032 322 68 2 chr1 113087086 113087656 -169106008 + L2 LINE L2 2695 3312 -1 456 306 38 16 chr1 113087808 113087994 -169105670 + MIR3 SINE MIR 2 191 -17 186 118 0 0 chr1 113088275 113088309 -169105355 + (CA)n Simple_repeat Simple_repeat 2 35 0 27 73 0 0 chr1 113088644 113088699 -169104965 + AT_rich Low_complexity Low_complexity 1 55 0 208 360 19 50 chr1 113088729 113088890 -169104774 + L2 LINE L2 2935 3090 -182 222 208 0 0 chr1 113088898 113088946 -169104718 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 404 282 69 83 chr1 113089002 113089279 -169104385 - L2 LINE L2 -90 3223 2951 1835 180 18 65 chr1 113089283 113089579 -169104085 - MLT1A1 LTR MaLR 0 365 89 2536 89 0 0 chr1 113089579 113089917 -169103747 - L1PA7 LINE L1 -6 6148 5811 1835 180 18 65 chr1 113089917 113090003 -169103661 - MLT1A1 LTR MaLR -276 89 1 2975 215 46 18 chr1 113090005 113090715 -169102949 - MLT1A1-int LTR MaLR -2 1733 952 * 7137 77 26 4 chr1 113090707 113091670 -169101994 + L1P3 LINE L1 740 1723 -4738 2083 133 0 3 chr1 113092015 113092317 -169101347 + AluSx SINE Alu 3 303 -9 342 262 37 19 chr1 113092653 113092760 -169100904 + L3 LINE CR1 1172 1280 -297 562 317 67 9 chr1 113092776 113093000 -169100664 - MIR SINE MIR -12 250 14 1788 166 7 14 chr1 113093056 113093340 -169100324 + AluJo SINE Alu 1 282 -30 23 0 0 0 chr1 113093340 113093363 -169100301 + AT_rich Low_complexity Low_complexity 1 23 0 514 307 117 0 chr1 113093386 113093591 -169100073 + L3 LINE CR1 1347 1575 -2 222 246 0 0 chr1 113094426 113094487 -169099177 + (CAT)n Simple_repeat Simple_repeat 2 62 0 622 250 69 23 chr1 113094514 113094729 -169098935 - MLT1H LTR MaLR 0 589 349 603 187 26 52 chr1 113094798 113094953 -169098711 - MLT1H LTR MaLR -379 170 20 644 237 106 20 chr1 113095159 113095427 -169098237 - MLT1D LTR MaLR 0 505 311 10518 187 28 54 chr1 113095436 113095652 -169098012 - L1 LINE L1 -1034 6531 6311 2117 113 7 7 chr1 113095652 113095945 -169097719 + AluSc SINE Alu 1 293 -16 10518 187 28 54 chr1 113095945 113096523 -169097141 - L1 LINE L1 -1254 6311 5720 1708 212 3 0 chr1 113096523 113096834 -169096830 - AluJb SINE Alu 0 312 1 10518 187 28 54 chr1 113096834 113096897 -169096767 - L1 LINE L1 -1845 5720 5657 3267 102 47 4 chr1 113096897 113097385 -169096279 - MER75 DNA T2_type -4 510 2 10518 187 28 54 chr1 113097385 113099649 -169094015 - L1 LINE L1 -1908 5657 3612 6061 95 32 0 chr1 113099646 113099997 -169093667 - L1PB1 LINE L1 -1 6150 5812 * 777 24 57 0 chr1 113099997 113100120 -169093544 + (TCTA)n Simple_repeat Simple_repeat 3 132 0 6061 95 32 0 chr1 113100120 113100676 -169092988 - L1PB1 LINE L1 -339 5812 5215 1044 244 0 0 chr1 113100675 113100925 -169092739 + L1PB1 LINE L1 4953 5202 -944 * 9448 219 43 23 chr1 113100923 113103789 -169089875 - L1 LINE L1 -3931 3634 16 475 179 32 32 chr1 113103882 113103977 -169089687 - MLT1D LTR MaLR -410 95 1 22 0 0 0 chr1 113104256 113104278 -169089386 + AT_rich Low_complexity Low_complexity 1 22 0 260 310 28 0 chr1 113105256 113105327 -169088337 - L2 LINE L2 -84 3188 3116 2212 149 86 8 chr1 113105532 113105914 -169087750 - MSTB LTR MaLR -2 424 13 267 377 9 14 chr1 113106232 113106455 -169087209 - MER89-int LTR ERV1 -3204 3597 3376 1807 173 42 0 chr1 113107083 113107413 -169086251 - MER2 DNA MER2_type 0 344 1 431 147 0 0 chr1 113107543 113107611 -169086053 + MSTC LTR MaLR 63 130 -298 300 292 8 33 chr1 113107767 113107887 -169085777 - MER89-int LTR ERV1 -4336 3420 3304 1544 192 85 44 chr1 113109066 113109477 -169084187 + MSTC LTR MaLR 1 428 0 360 308 44 19 chr1 113109621 113109780 -169083884 - MER89-int LTR ERV1 -5414 1387 1225 4902 130 3 62 chr1 113110505 113111357 -169082307 + THE1-int LTR MaLR 273 1074 -506 432 141 77 0 chr1 113111357 113111435 -169082229 + THE1B LTR MaLR 85 168 -207 758 178 50 66 chr1 113111590 113111831 -169081833 + THE1B LTR MaLR 139 364 0 979 314 59 9 chr1 113111831 113112169 -169081495 + L2 LINE L2 2550 2904 -410 1424 254 122 37 chr1 113112178 113112900 -169080764 - L1MC4a LINE L1 -1765 6043 5261 234 158 11 126 chr1 113113033 113113128 -169080536 - Charlie5 DNA MER1_type 0 2620 2537 183 186 0 0 chr1 113113128 113113171 -169080493 + A-rich Low_complexity Low_complexity 1 43 0 568 280 55 61 chr1 113113172 113113518 -169080146 - HAL1b LINE L1 -725 623 280 3270 56 5 2 chr1 113113530 113113938 -169079726 + MLT2A1 LTR ERVL 1 409 -35 277 195 69 0 chr1 113113949 113114036 -169079628 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 407 48 0 14 chr1 113114038 113114107 -169079557 + MLT2A1 LTR ERVL 399 444 0 4211 65 6 4 chr1 113114107 113114645 -169079019 + HERVL-A1 LTR ERVL 1 539 -5115 5002 68 19 0 chr1 113114645 113115295 -169078369 + L1PA7 LINE L1 5477 6138 -16 637 237 6 0 chr1 113115476 113115632 -169078032 - L1MA10 LINE L1 -8 6326 6170 247 158 24 181 chr1 113115632 113115759 -169077905 - L1MD1 LINE L1 -244 5998 5892 775 183 5 80 chr1 113115894 113116107 -169077557 - L1ME2 LINE L1 -274 5890 5694 3553 225 11 4 chr1 113116121 113116953 -169076711 + L1P LINE L1 2827 3664 -2482 264 313 53 33 chr1 113117899 113118142 -169075522 + L2 LINE L2 2817 3064 -208 365 266 252 0 chr1 113119106 113119245 -169074419 - MIR SINE MIR -8 254 81 887 96 0 0 chr1 113121817 113121942 -169071722 + L1PB3 LINE L1 6029 6153 -1 27 0 0 0 chr1 113123300 113123327 -169070337 + AT_rich Low_complexity Low_complexity 1 27 0 711 283 156 5 chr1 113123435 113123647 -169070017 + MIR SINE MIR 1 244 -18 21 71 0 0 chr1 113123784 113123826 -169069838 + AT_rich Low_complexity Low_complexity 1 42 0 2095 127 0 7 chr1 113124254 113124561 -169069103 - AluSx SINE Alu -3 309 5 180 214 0 0 chr1 113125110 113125166 -169068498 + (TA)n Simple_repeat Simple_repeat 2 57 0 24 67 0 0 chr1 113126855 113126900 -169066764 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr1 113127516 113127542 -169066122 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr1 113128679 113128721 -169064943 + AT_rich Low_complexity Low_complexity 1 42 0 210 186 0 23 chr1 113128898 113128941 -169064723 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 185 56 0 83 chr1 113129687 113129723 -169063941 + (T)n Simple_repeat Simple_repeat 1 33 0 1931 129 48 21 chr1 113130911 113131245 -169062419 + MER2 DNA MER2_type 2 344 0 2491 188 28 52 chr1 113132684 113133260 -169060404 - MER68 LTR ERV1 0 562 1 28 48 0 0 chr1 113134188 113134230 -169059434 + AT_rich Low_complexity Low_complexity 1 42 0 2691 17 0 0 chr1 113134548 113134844 -169058820 - AluY SINE Alu -14 297 2 1158 178 41 48 chr1 113135200 113135469 -169058195 + L1MA10 LINE L1 5994 6260 -74 1285 43 0 12 chr1 113235547 113235708 -168957956 - L1PA6 LINE L1 -4 6150 5992 367 336 8 25 chr1 113235955 113236077 -168957587 - L2 LINE L2 -4 3268 3149 * 897 345 146 22 chr1 113236061 113236676 -168956988 - L3 LINE CR1 -213 1364 648 1962 132 75 29 chr1 113236676 113237024 -168956640 - THE1B LTR MaLR 0 364 1 897 345 146 22 chr1 113237024 113237122 -168956542 - L3 LINE CR1 -929 648 563 238 264 69 28 chr1 113238084 113238156 -168955508 - L2 LINE L2 -66 3206 3132 22 56 0 0 chr1 113240213 113240249 -168953415 + AT_rich Low_complexity Low_complexity 1 36 0 405 241 125 0 chr1 113240323 113240435 -168953229 + MIR SINE MIR 19 144 -64 699 277 64 0 chr1 113241969 113242157 -168951507 + MIR SINE MIR 47 246 -16 421 281 146 17 chr1 113242897 113243075 -168950589 + MIR SINE MIR 1 201 -61 192 77 0 0 chr1 113243161 113243187 -168950477 + (TG)n Simple_repeat Simple_repeat 1 26 0 1029 331 69 20 chr1 113243306 113243799 -168949865 + L3 LINE CR1 1024 1540 -37 311 239 92 39 chr1 113244678 113244808 -168948856 + L2 LINE L2 2494 2630 -684 210 341 138 16 chr1 113244814 113244937 -168948727 - MIR SINE MIR -21 241 104 * 226 192 50 71 chr1 113244935 113245034 -168948630 - MIR SINE MIR 0 262 166 2553 142 37 23 chr1 113245188 113245675 -168947989 - L1MA7 LINE L1 -3 6288 5795 353 308 80 59 chr1 113245785 113246022 -168947642 + L2 LINE L2 2837 3078 -194 347 287 47 40 chr1 113246064 113246214 -168947450 - L2 LINE L2 0 3272 3122 736 153 0 17 chr1 113246291 113246409 -168947255 + FLAM_C SINE Alu 3 118 -25 324 0 0 0 chr1 113246453 113246489 -168947175 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 220 0 0 chr1 113246501 113246560 -168947104 + L2 LINE L2 3214 3272 0 694 223 0 8 chr1 113246586 113246716 -168946948 - FLAM_A SINE Alu -4 129 1 322 278 98 26 chr1 113247894 113248032 -168945632 + MIR SINE MIR 8 149 -59 202 208 62 0 chr1 113248032 113248080 -168945584 + GA-rich Low_complexity Low_complexity 3 53 0 247 238 155 0 chr1 113248080 113248125 -168945539 + MIR SINE MIR 148 185 -77 207 0 0 0 chr1 113248125 113248148 -168945516 + (TA)n Simple_repeat Simple_repeat 2 24 0 247 238 155 0 chr1 113248148 113248186 -168945478 + MIR SINE MIR 185 244 -18 347 352 82 16 chr1 113250044 113250226 -168943438 + MIR SINE MIR 21 214 -48 936 272 47 43 chr1 113251070 113251546 -168942118 - MLT1H LTR MaLR -22 527 1 276 242 95 11 chr1 113253017 113253112 -168940552 + MIR SINE MIR 137 239 -23 1504 149 109 37 chr1 113253299 113253649 -168940015 - THE1C LTR MaLR 0 375 1 220 301 82 68 chr1 113256608 113256900 -168936764 - L2 LINE L2 -9 3304 3009 313 307 21 43 chr1 113258561 113258701 -168934963 + MER5A DNA MER1_type 5 141 -48 2496 39 0 26 chr1 113258924 113259236 -168934428 - AluY SINE Alu -7 304 1 277 200 128 32 chr1 113259284 113259409 -168934255 - L1ME3A LINE L1 -219 5951 5815 2424 86 34 6 chr1 113259426 113259776 -168933888 - L1PA13 LINE L1 -3 6160 5801 223 178 0 0 chr1 113259850 113259895 -168933769 + (TA)n Simple_repeat Simple_repeat 1 45 0 533 253 71 14 chr1 113259895 113260192 -168933472 - L1ME3A LINE L1 -1446 4700 4387 1484 261 17 19 chr1 113260251 113260665 -168932999 - L1ME1 LINE L1 -91 6075 5663 288 0 0 0 chr1 113260666 113260698 -168932966 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 107 0 0 chr1 113260699 113260727 -168932937 + (GA)n Simple_repeat Simple_repeat 1 28 0 851 226 40 23 chr1 113260739 113261321 -168932343 - L1ME1 LINE L1 -644 5522 4833 1043 49 0 123 chr1 113261323 113261486 -168932178 - AluSc SINE Alu -13 296 154 4183 230 70 46 chr1 113261488 113262807 -168930857 - L1ME1 LINE L1 -1304 4842 3483 2340 84 24 0 chr1 113262807 113263104 -168930560 + AluY SINE Alu 1 304 -7 4183 230 70 46 chr1 113263104 113263264 -168930400 - L1ME1 LINE L1 -2663 3483 3328 1776 247 122 2 chr1 113263277 113263901 -168929763 + L1M4 LINE L1 2918 3616 -2530 245 180 0 40 chr1 113263901 113263951 -168929713 - MLT2D LTR ERVL -214 200 153 600 186 58 0 chr1 113264029 113264185 -168929479 + L1MA10 LINE L1 6169 6333 -1 2361 86 0 13 chr1 113264205 113264509 -168929155 + AluY SINE Alu 2 301 -10 977 208 55 8 chr1 113264785 113265021 -168928643 + L1ME3A LINE L1 5824 6070 -100 1818 169 0 13 chr1 113265594 113266005 -168927659 + AluJb SINE Alu 1 407 0 309 261 0 0 chr1 113266872 113266937 -168926727 + MIR3 SINE MIR 116 180 -28 204 40 0 0 chr1 113267215 113267240 -168926424 + (A)n Simple_repeat Simple_repeat 1 25 0 264 341 47 29 chr1 113268120 113268290 -168925374 - MER5A DNA MER1_type 0 189 17 * 390 303 46 13 chr1 113268140 113268292 -168925372 + MER5A DNA MER1_type 33 189 0 2257 123 0 0 chr1 113268375 113268684 -168924980 - AluSx SINE Alu -3 309 1 264 327 214 6 chr1 113269905 113270251 -168923413 + L2 LINE L2 1945 2362 -952 3769 247 64 20 chr1 113270257 113271771 -168921893 - L1MEc LINE L1 -2505 3710 2162 * 4721 198 45 17 chr1 113271764 113273585 -168920079 - L1MB1 LINE L1 -2 6235 1532 616 220 193 0 chr1 113274820 113274992 -168918672 - MIR SINE MIR -3 259 56 358 224 172 6 chr1 113275254 113275428 -168918236 - MER113 DNA MER1_type? -313 208 6 271 206 147 0 chr1 113275638 113275706 -168917958 - MER116 DNA Mariner 0 80 3 344 168 196 56 chr1 113275716 113275823 -168917841 - MLT1H1 LTR MaLR -7 539 322 207 325 11 90 chr1 113276152 113276429 -168917235 - L2 LINE L2 -189 3083 2829 243 264 28 62 chr1 113276700 113276815 -168916849 + L1ME LINE L1 5776 5887 -234 2253 99 0 7 chr1 113276815 113277118 -168916546 + AluSp SINE Alu 3 303 -10 243 264 28 62 chr1 113277118 113277146 -168916518 + L1ME LINE L1 5887 5914 -207 296 359 78 0 chr1 113278572 113278714 -168914950 - MIR SINE MIR -109 153 1 2133 206 73 0 chr1 113279361 113279827 -168913837 + MLT1D LTR MaLR 3 502 -3 524 324 165 25 chr1 113280512 113281111 -168912553 + L1ME LINE L1 2775 3457 -2689 269 312 87 69 chr1 113281207 113281250 -168912414 + MER5B DNA MER1_type 1 42 -136 2455 56 0 13 chr1 113281250 113281554 -168912110 - AluY SINE Alu -11 300 1 269 312 87 69 chr1 113281554 113281683 -168911981 + MER5B DNA MER1_type 42 176 -2 283 305 66 43 chr1 113281728 113282030 -168911634 + L1ME LINE L1 3626 3934 -2212 455 323 100 47 chr1 113282050 113282431 -168911233 + L1ME LINE L1 4081 4481 -1665 34 72 0 0 chr1 113282432 113282501 -168911163 + AT_rich Low_complexity Low_complexity 1 69 0 309 335 106 0 chr1 113282512 113282700 -168910964 + L1ME LINE L1 5185 5392 -754 233 360 27 13 chr1 113282737 113282887 -168910777 + L1ME LINE L1 5431 5582 -584 2138 119 0 3 chr1 113283060 113283354 -168910310 + AluSx SINE Alu 1 293 -19 526 268 117 30 chr1 113284365 113284596 -168909068 + L3 LINE CR1 1024 1274 -303 221 227 0 0 chr1 113285095 113285139 -168908525 + MIR SINE MIR 219 262 0 276 332 138 12 chr1 113285209 113285462 -168908202 - L2 LINE L2 -494 2820 2536 235 284 196 0 chr1 113285787 113285935 -168907729 - L2 LINE L2 -1223 2091 1915 6474 135 15 14 chr1 113286494 113287925 -168905739 + L1MA5A LINE L1 4867 6297 0 258 147 59 49 chr1 113288263 113288365 -168905299 + (TTAA)n Simple_repeat Simple_repeat 1 103 0 589 337 121 55 chr1 113288548 113288972 -168904692 - L2 LINE L2 -655 2659 2264 2270 141 3 3 chr1 113288972 113289320 -168904344 - MER7A DNA MER2_type 0 346 1 589 337 121 55 chr1 113289320 113289731 -168903933 - L2 LINE L2 -1050 2264 1769 1727 245 50 45 chr1 113289774 113290816 -168902848 - L1ME LINE L1 -495 5603 4567 2043 100 30 0 chr1 113290816 113291087 -168902577 + AluSx SINE Alu 1 279 -33 471 18 0 0 chr1 113291087 113291143 -168902521 + (CA)n Simple_repeat Simple_repeat 1 56 0 1727 245 50 45 chr1 113291143 113291240 -168902424 - L1ME LINE L1 -1530 4568 4457 1446 240 93 47 chr1 113291296 113292257 -168901407 - L1MEc LINE L1 -3627 2453 1492 3883 187 30 33 chr1 113292277 113293133 -168900531 - L1MB4 LINE L1 -2 6178 5325 1401 125 0 0 chr1 113293234 113293426 -168900238 - AluSx SINE Alu -120 192 1 1890 230 19 4 chr1 113293427 113293909 -168899755 - L1MB4 LINE L1 -815 5331 4843 4579 141 79 15 chr1 113293909 113294744 -168898920 + L1MA5 LINE L1 5372 6267 -33 2008 182 68 79 chr1 113294744 113295304 -168898360 + MLT2B3 LTR ERVL 1 554 0 4579 141 79 15 chr1 113295304 113295341 -168898323 + L1MA5 LINE L1 6267 6300 0 983 239 14 18 chr1 113295339 113295624 -168898040 - L1MB4 LINE L1 -1286 4860 4577 * 777 276 93 54 chr1 113295647 113296530 -168897134 - L1MEc LINE L1 -4772 1489 573 742 340 39 31 chr1 113296695 113297210 -168896454 - L1MEc LINE L1 -5549 521 3 209 348 82 51 chr1 113297339 113297497 -168896167 + MIR SINE MIR 15 177 -85 3700 54 2 0 chr1 113297563 113298024 -168895640 + L1PA5 LINE L1 5690 6151 -3 27 49 0 0 chr1 113298097 113298138 -168895526 + AT_rich Low_complexity Low_complexity 1 41 0 1854 292 167 28 chr1 113298176 113299076 -168894588 + L2 LINE L2 1635 2409 -904 2118 128 76 15 chr1 113299076 113299419 -168894245 - THE1B LTR MaLR 0 364 1 11540 94 10 1 chr1 113299419 113300985 -168892679 - THE1B-int LTR MaLR 0 1580 1 2256 111 73 14 chr1 113300985 113301329 -168892335 - THE1B LTR MaLR 0 364 1 1854 292 167 28 chr1 113301329 113301887 -168891777 + L2 LINE L2 2408 3306 -7 2265 144 87 7 chr1 113301983 113302442 -168891222 - LTR54B LTR ERV1 -2 496 1 3048 76 0 2 chr1 113303417 113303811 -168889853 + MLT2A1 LTR ERVL 1 393 -51 417 38 0 0 chr1 113303877 113303930 -168889734 + MLT2A1 LTR ERVL 392 444 0 288 308 57 26 chr1 113304086 113304313 -168889351 - L1ME4a LINE L1 -239 5882 5649 25 51 0 0 chr1 113304510 113304549 -168889115 + AT_rich Low_complexity Low_complexity 1 39 0 2221 213 115 49 chr1 113304930 113305598 -168888066 - MER72 LTR ERV1 -10 712 1 264 30 0 0 chr1 113305825 113305858 -168887806 + (TG)n Simple_repeat Simple_repeat 2 34 0 2154 117 0 0 chr1 113306616 113306914 -168886750 - AluSg SINE Alu -8 302 5 330 266 37 84 chr1 113306975 113307189 -168886475 - L1ME3A LINE L1 0 6170 5967 2160 155 17 6 chr1 113307693 113308054 -168885610 - MLT1A1 LTR MaLR 0 365 1 403 319 28 14 chr1 113308078 113308219 -168885445 + MLT1L LTR MaLR 118 260 -355 745 268 113 48 chr1 113308219 113308619 -168885045 - LTR33A LTR ERVL -91 432 7 448 292 50 6 chr1 113308630 113308791 -168884873 - L2 LINE L2 -816 2498 2331 192 188 43 0 chr1 113308838 113308907 -168884757 + GA-rich Low_complexity Low_complexity 2 73 0 22 0 0 0 chr1 113310035 113310057 -168883607 + AT_rich Low_complexity Low_complexity 1 22 0 2199 111 0 7 chr1 113310346 113310653 -168883011 + AluSx SINE Alu 1 305 -7 537 320 61 68 chr1 113311883 113312177 -168881487 - L2 LINE L2 -5 3267 2976 721 189 26 0 chr1 113312178 113312331 -168881333 + L1MA10 LINE L1 6178 6334 0 1696 123 0 8 chr1 113313303 113313577 -168880087 + AluSq SINE Alu 45 316 0 1150 199 82 33 chr1 113313735 113314108 -168879556 + MSTC LTR MaLR 1 428 0 382 284 78 9 chr1 113314149 113314265 -168879399 + MIR SINE MIR 10 133 -129 1007 255 25 60 chr1 113314901 113315269 -168878395 - MLT1I LTR MaLR -53 356 2 239 323 60 35 chr1 113316240 113316441 -168877223 + LTR16A1 LTR ERVL 30 235 -222 423 0 0 0 chr1 113316786 113316833 -168876831 + (CA)n Simple_repeat Simple_repeat 2 48 0 3253 94 54 13 chr1 113316835 113317464 -168876200 + MER11A LTR ERVK 2 722 -514 23 0 0 0 chr1 113317464 113317487 -168876177 + AT_rich Low_complexity Low_complexity 1 23 0 6569 28 4 0 chr1 113317489 113318267 -168875397 - L1PA4 LINE L1 -2 6153 5373 * 8178 37 3 0 chr1 113318266 113319275 -168874389 + L1PA4 LINE L1 4361 5372 -774 2847 70 0 32 chr1 113319275 113319677 -168873987 + MER11A LTR ERVK 878 1266 0 1898 130 22 0 chr1 113321042 113321345 -168872319 - AluSx SINE Alu 0 309 1 478 251 20 47 chr1 113322932 113323107 -168870557 + MIR SINE MIR 3 238 -24 2256 125 0 6 chr1 113323236 113323572 -168870092 - MER44D DNA MER2_type -5 604 1 487 330 128 48 chr1 113324052 113324165 -168869499 - L2 LINE L2 0 3272 3170 1464 124 27 4 chr1 113324165 113324390 -168869274 + MER30 DNA MER1_type 1 230 0 487 330 128 48 chr1 113324390 113324564 -168869100 - L2 LINE L2 -102 3170 3011 2114 113 7 10 chr1 113324564 113324857 -168868807 + AluSx SINE Alu 1 292 -20 487 330 128 48 chr1 113324857 113324989 -168868675 - L2 LINE L2 -261 3011 2818 556 306 160 7 chr1 113325143 113325418 -168868246 - L2 LINE L2 -477 2837 2521 24 32 0 0 chr1 113325506 113325537 -168868127 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 113325849 113325871 -168867793 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 75 chr1 113326028 113326068 -168867596 + AT_rich Low_complexity Low_complexity 1 37 0 472 327 91 0 chr1 113326207 113326406 -168867258 - MERVL LTR ERVL -1201 4284 4068 1140 346 36 24 chr1 113326440 113327163 -168866501 - MERVL LTR ERVL -1777 3987 3256 22 80 0 0 chr1 113328483 113328533 -168865131 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr1 113329316 113329339 -168864325 + AT_rich Low_complexity Low_complexity 1 23 0 14647 199 20 7 chr1 113329460 113332256 -168861408 + L1P5 LINE L1 1610 4429 -1722 204 40 0 0 chr1 113332256 113332281 -168861383 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 14647 199 20 7 chr1 113332281 113333550 -168860114 + L1P5 LINE L1 4429 5680 -471 713 103 26 8 chr1 113333693 113333810 -168859854 + L1PB1 LINE L1 5638 5756 -395 235 123 41 68 chr1 113333810 113333883 -168859781 - LTR66 LTR ERVL -146 464 394 521 193 0 28 chr1 113333883 113334028 -168859636 + (TA)n Simple_repeat Simple_repeat 1 141 0 2500 99 11 3 chr1 113334028 113334393 -168859271 + L1PB1 LINE L1 5782 6149 -2 25 31 0 0 chr1 113334393 113334425 -168859239 + AT_rich Low_complexity Low_complexity 1 32 0 513 343 56 15 chr1 113334425 113334693 -168858971 - L2 LINE L2 -1307 2007 1729 1380 264 91 4 chr1 113334728 113335232 -168858432 - L1MEc LINE L1 -1784 4431 3884 886 180 87 0 chr1 113335324 113335485 -168858179 - MER20 DNA MER1_type -44 175 1 1234 216 62 36 chr1 113335487 113335935 -168857729 - L1MEc LINE L1 -2905 3310 2851 34871 100 12 29 chr1 113335987 113342085 -168851579 + L1PA7 LINE L1 11 6002 -152 232 207 52 0 chr1 113342450 113342508 -168851156 - L1PA7 LINE L1 -125 6029 5969 * 367 138 0 17 chr1 113342475 113342533 -168851131 + L1PA7 LINE L1 5967 6023 -131 * 1613 274 94 7 chr1 113342532 113343487 -168850177 - L1MEc LINE L1 -3504 2711 1708 * 10856 155 72 50 chr1 113343477 113345982 -168847682 - L1MCa LINE L1 -3871 2555 1 3288 93 4 13 chr1 113346547 113347018 -168846646 - L1PA10 LINE L1 -16 6152 5686 470 315 123 8 chr1 113347458 113347693 -168845971 + MIR SINE MIR 1 262 0 348 236 6 143 chr1 113349303 113349485 -168844179 + MER5B DNA MER1_type 18 174 -4 316 271 186 7 chr1 113350431 113350571 -168843093 + MIR SINE MIR 34 198 -64 259 132 0 0 chr1 113350681 113350719 -168842945 + MIR SINE MIR 79 116 -146 2050 131 131 11 chr1 113351246 113351627 -168842037 + MSTA LTR MaLR 1 427 -1 22 0 0 0 chr1 113352915 113352937 -168840727 + AT_rich Low_complexity Low_complexity 1 22 0 2120 128 0 0 chr1 113352937 113353226 -168840438 - AluSx SINE Alu -23 289 1 27 0 0 0 chr1 113353271 113353298 -168840366 + AT_rich Low_complexity Low_complexity 1 27 0 312 27 0 0 chr1 113353313 113353350 -168840314 + (CA)n Simple_repeat Simple_repeat 2 38 0 1852 198 23 6 chr1 113353399 113353747 -168839917 - MLT1A1 LTR MaLR 0 365 12 2641 193 29 74 chr1 113354173 113354873 -168838791 + LTR8 LTR ERV1 16 683 -8 417 220 42 17 chr1 113355434 113355552 -168838112 - MLT2F LTR ERVL 0 663 543 301 98 0 0 chr1 113355635 113355676 -168837988 - L1PA7 LINE L1 -325 5847 5807 * 31051 116 9 58 chr1 113355674 113362058 -168831606 - L1PA7 LINE L1 -81 6073 12 679 200 8 8 chr1 113362477 113362607 -168831057 + L2 LINE L2 3184 3313 0 248 135 0 19 chr1 113363223 113363275 -168830389 + (TA)n Simple_repeat Simple_repeat 2 52 0 227 359 15 23 chr1 113363768 113363899 -168829765 - L2 LINE L2 -6 3307 3178 539 282 172 0 chr1 113365235 113365444 -168828220 + L3 LINE CR1 1297 1541 -36 376 329 108 45 chr1 113365525 113365747 -168827917 - L2 LINE L2 -2 3270 3035 469 272 224 0 chr1 113366487 113366634 -168827030 - MER5A DNA MER1_type 0 189 10 23 0 0 0 chr1 113367518 113367541 -168826123 + AT_rich Low_complexity Low_complexity 1 23 0 295 340 46 20 chr1 113367618 113367771 -168825893 - MIR SINE MIR -18 244 88 870 285 13 9 chr1 113368166 113368394 -168825270 - MIR SINE MIR -1 261 33 23 33 0 0 chr1 113368771 113368801 -168824863 + AT_rich Low_complexity Low_complexity 1 30 0 872 261 40 34 chr1 113369783 113370136 -168823528 - L1M4 LINE L1 -2302 3844 3490 192 125 0 0 chr1 113370179 113370211 -168823453 + (CA)n Simple_repeat Simple_repeat 2 33 0 239 195 0 0 chr1 113370222 113370263 -168823401 - AluJo SINE Alu -20 282 242 1031 214 0 20 chr1 113370267 113370468 -168823196 - AluJo SINE Alu -115 197 1 257 280 38 5 chr1 113370468 113370654 -168823010 - L1M4 LINE L1 -2746 3400 3209 * 8304 161 16 12 chr1 113370641 113371768 -168821896 - L1PA16 LINE L1 -2 6164 5043 2161 142 3 0 chr1 113371768 113372079 -168821585 - AluJb SINE Alu 0 312 1 8304 161 16 12 chr1 113372079 113373526 -168820138 - L1PA16 LINE L1 -1123 5043 3589 1744 170 3 3 chr1 113373549 113373854 -168819810 - AluJo SINE Alu 0 305 1 289 248 198 34 chr1 113373859 113373980 -168819684 - L1M4 LINE L1 -2914 3232 3132 2365 100 0 0 chr1 113373980 113374289 -168819375 - AluY SINE Alu -2 309 1 289 248 198 34 chr1 113374289 113374405 -168819259 - L1M4 LINE L1 -3014 3132 2956 817 279 60 15 chr1 113374410 113374679 -168818985 - L2 LINE L2 -337 2977 2697 266 281 56 11 chr1 113374759 113374848 -168818816 - MIR SINE MIR -14 248 156 880 232 152 0 chr1 113374880 113375104 -168818560 - MIR SINE MIR -3 259 2 333 268 36 18 chr1 113375124 113375236 -168818428 - MIR SINE MIR -121 141 28 319 257 54 0 chr1 113375470 113375544 -168818120 + L2 LINE L2 3188 3265 -7 183 80 0 0 chr1 113376019 113376044 -168817620 + (A)n Simple_repeat Simple_repeat 1 25 0 1530 146 213 14 chr1 113376162 113376519 -168817145 - MSTA LTR MaLR 0 428 1 505 298 86 13 chr1 113377161 113377312 -168816352 + MIR SINE MIR 12 173 -89 597 324 52 27 chr1 113377493 113377894 -168815770 + L2 LINE L2 1194 1604 -1710 332 347 33 0 chr1 113377894 113378044 -168815620 + L2 LINE L2 2078 2232 -1082 1073 303 145 32 chr1 113378050 113378247 -168815417 + L2 LINE L2 2392 2565 -748 1111 167 9 48 chr1 113378247 113378474 -168815190 - MER20 DNA MER1_type 0 219 2 1073 303 145 32 chr1 113378474 113379058 -168814606 + L2 LINE L2 2565 3272 -41 221 309 177 31 chr1 113379123 113379372 -168814292 - L2 LINE L2 -35 3237 2919 2152 122 5 106 chr1 113379372 113379806 -168813858 + MLT1B LTR MaLR 1 390 0 221 309 177 31 chr1 113379806 113379912 -168813752 - L2 LINE L2 -353 2919 2830 638 270 44 20 chr1 113380100 113380304 -168813360 + MIR SINE MIR 23 231 -31 818 320 126 27 chr1 113380338 113381053 -168812611 - L2 LINE L2 -731 2583 1798 913 143 0 0 chr1 113381073 113381206 -168812458 - FLAM_C SINE Alu 0 133 1 540 30 0 0 chr1 113381226 113381292 -168812372 + (GA)n Simple_repeat Simple_repeat 1 66 0 1334 187 224 8 chr1 113381426 113381828 -168811836 + Charlie4a DNA MER1_type 20 508 0 313 308 47 9 chr1 113382876 113382983 -168810681 - MIR SINE MIR -64 144 34 354 274 12 42 chr1 113383115 113383132 -168810532 - L1MA10 LINE L1 -2 6332 6316 2897 214 10 8 chr1 113383132 113383739 -168809925 - L1ME1 LINE L1 -5 6161 5554 401 305 150 28 chr1 113383896 113384109 -168809555 + MIR SINE MIR 3 241 -21 883 155 91 5 chr1 113385761 113385948 -168807716 + MER105 DNA DNA 1 203 -1 204 228 0 139 chr1 113386038 113386117 -168807547 - L2 LINE L2 -6 3266 3199 2382 94 0 0 chr1 113387005 113387304 -168806360 + AluSx SINE Alu 1 299 -13 2454 81 0 0 chr1 113387838 113388146 -168805518 - AluSc SINE Alu -1 308 1 1697 97 15 8 chr1 113388287 113388554 -168805110 - L1PA5 LINE L1 0 6154 5886 1327 126 38 53 chr1 113388654 113388850 -168804814 + HERVL-B3 LTR ERVL 5397 5590 -64 2788 165 86 50 chr1 113388850 113389552 -168804112 - LTR8A LTR ERV1 0 727 1 1327 126 38 53 chr1 113389552 113389617 -168804047 + HERVL-B3 LTR ERVL 5590 5654 0 1498 231 59 111 chr1 113389617 113390193 -168803471 + MLT2B3 LTR ERVL 1 546 -8 21 100 0 0 chr1 113392891 113392961 -168800703 + AT_rich Low_complexity Low_complexity 1 70 0 270 0 0 0 chr1 113393163 113393193 -168800471 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr1 113394222 113394247 -168799417 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 451 280 35 49 chr1 113396320 113396624 -168797040 - L2 LINE L2 0 3313 2736 269 356 61 15 chr1 113396642 113396774 -168796890 - MIR SINE MIR -105 157 20 2325 168 66 7 chr1 113398289 113398730 -168794934 - MLT1C LTR MaLR 0 467 1 709 254 71 38 chr1 113399785 113400025 -168793639 - MIR SINE MIR -2 260 13 860 239 80 24 chr1 113400049 113400464 -168793200 - L1MCc LINE L1 -4887 1536 1236 27 0 0 0 chr1 113400746 113400773 -168792891 + AT_rich Low_complexity Low_complexity 1 27 0 186 167 0 0 chr1 113402853 113402889 -168790775 + (TATG)n Simple_repeat Simple_repeat 2 37 0 261 0 0 0 chr1 113403236 113403265 -168790399 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr1 113403523 113403552 -168790112 + AT_rich Low_complexity Low_complexity 1 29 0 230 236 167 42 chr1 113404009 113404153 -168789511 - L1MCc LINE L1 -5446 977 816 453 200 295 0 chr1 113404747 113404947 -168788717 - L1ME3A LINE L1 -7 6163 5905 280 255 16 54 chr1 113405378 113405562 -168788102 + CT-rich Low_complexity Low_complexity 3 179 0 318 268 110 69 chr1 113405562 113405853 -168787811 - L1M4c LINE L1 -5081 1303 1001 360 293 8 0 chr1 113406640 113406763 -168786901 + (CCA)n Simple_repeat Simple_repeat 1 124 0 1335 263 56 5 chr1 113407448 113407825 -168785839 + L1MC4a LINE L1 5356 5751 -2057 4354 147 123 8 chr1 113407829 113407934 -168785730 - MER21B LTR ERV1 0 863 771 2820 112 203 0 chr1 113407934 113408462 -168785202 - LTR24C LTR ERV1 0 635 1 4354 147 123 8 chr1 113408462 113409130 -168784534 - MER21B LTR ERV1 -92 771 1 264 244 70 23 chr1 113409147 113409233 -168784431 + L1MC4a LINE L1 5800 5889 -1919 255 269 56 0 chr1 113409291 113409399 -168784265 + L1MC4a LINE L1 5910 6023 -1785 823 131 48 28 chr1 113409461 113409606 -168784058 - AluJb SINE Alu -23 289 142 33060 89 60 27 chr1 113409825 113415559 -168778105 - L1PA6 LINE L1 -2 6152 41 1373 230 56 41 chr1 113416229 113416642 -168777022 - LTR16C LTR ERVL 0 491 73 2111 154 111 19 chr1 113417231 113417646 -168776018 + MLT1D LTR MaLR 8 460 -45 917 170 35 30 chr1 113417674 113417874 -168775790 + MIR SINE MIR 30 230 -32 1673 170 184 8 chr1 113418372 113418736 -168774928 + MSTA LTR MaLR 1 428 0 193 284 119 0 chr1 113419539 113419606 -168774058 - L2 LINE L2 0 3272 3198 399 220 18 107 chr1 113419702 113419870 -168773794 + MIR SINE MIR 60 212 -50 32 26 0 0 chr1 113420358 113420397 -168773267 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr1 113421593 113421629 -168772035 + AT_rich Low_complexity Low_complexity 1 36 0 217 61 61 20 chr1 113421796 113421845 -168771819 + (CTTTA)n Simple_repeat Simple_repeat 2 52 0 299 347 118 68 chr1 113421966 113422520 -168771144 - L2 LINE L2 -36 3236 2641 1234 269 109 35 chr1 113422520 113423071 -168770593 - MLT1E LTR MaLR 0 593 2 299 347 118 68 chr1 113423071 113423281 -168770383 - L2 LINE L2 -631 2641 2443 339 343 49 0 chr1 113423620 113423722 -168769942 - L2 LINE L2 -2 3270 3164 227 239 239 0 chr1 113424002 113424069 -168769595 - MER5B DNA MER1_type -24 154 72 2475 51 0 29 chr1 113424169 113424482 -168769182 - AluY SINE Alu -7 304 1 2355 304 133 28 chr1 113425399 113426852 -168766812 - L2 LINE L2 -4 3309 1633 571 205 228 6 chr1 113426852 113427023 -168766641 + MER3 DNA MER1_type 1 209 0 2355 304 133 28 chr1 113427023 113427280 -168766384 - L2 LINE L2 -1680 1633 1404 2338 145 0 0 chr1 113428930 113429267 -168764397 + MER1B DNA MER1_type 1 337 0 1291 188 9 0 chr1 113429281 113429494 -168764170 + MER20 DNA MER1_type 5 219 0 1411 204 13 23 chr1 113429635 113429943 -168763721 + AluJo SINE Alu 1 305 -7 409 308 26 82 chr1 113430004 113430199 -168763465 - MIR3 SINE MIR -9 199 16 2930 137 23 55 chr1 113430323 113430929 -168762735 - L1MB7 LINE L1 -32 6152 5566 218 313 83 49 chr1 113431708 113431852 -168761812 + L2 LINE L2 2920 3068 -204 233 229 42 0 chr1 113433692 113433740 -168759924 - MER117 DNA MER1_type -114 83 34 219 69 0 0 chr1 113433955 113433984 -168759680 + (ATG)n Simple_repeat Simple_repeat 1 29 0 344 296 70 17 chr1 113434467 113434582 -168759082 - L2 LINE L2 -8 3305 3185 1291 83 42 5 chr1 113434794 113434986 -168758678 - AluY SINE Alu -7 304 106 1053 72 7 7 chr1 113435086 113435225 -168758439 - AluY SINE Alu -172 139 1 2550 164 8 22 chr1 113435468 113435957 -168757707 + L1MB2 LINE L1 5690 6171 0 2193 141 39 3 chr1 113436290 113436652 -168757012 - THE1C LTR MaLR 0 375 1 6270 121 22 8 chr1 113436652 113437625 -168756039 - THE1C-int LTR MaLR 0 1580 595 513 211 46 18 chr1 113437998 113438107 -168755557 + L2 LINE L2 3160 3271 -1 840 154 83 13 chr1 113439899 113440055 -168753609 + AluJb SINE Alu 137 303 -9 588 103 0 62 chr1 113441946 113442043 -168751621 + AluJb SINE Alu 208 298 -14 624 187 27 59 chr1 113442096 113442283 -168751381 - Charlie2a DNA MER1_type -1202 1660 1480 1213 271 30 73 chr1 113442804 113443394 -168750270 - Charlie2 DNA MER1_type -2192 590 26 1978 148 29 19 chr1 113443603 113443982 -168749682 - L1MB3 LINE L1 -6 6177 5795 2706 164 94 50 chr1 113444283 113445310 -168748354 - L1P3 LINE L1 -484 5670 4594 1161 217 75 10 chr1 113445498 113445863 -168747801 - MLT1E1 LTR MaLR 0 654 208 621 108 23 11 chr1 113445872 113446047 -168747617 - L1PA16 LINE L1 -9 6157 5946 365 322 67 15 chr1 113446062 113446404 -168747260 + L1 LINE L1 3987 4346 -1800 183 42 0 0 chr1 113447223 113447247 -168746417 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2182 139 6 117 chr1 113447461 113447930 -168745734 + MER47B DNA MER2_type 1 417 -1 382 232 98 9 chr1 113447993 113448105 -168745559 - FLAM_A SINE Alu -11 122 1 31 0 0 0 chr1 113448510 113448541 -168745123 + AT_rich Low_complexity Low_complexity 1 31 0 240 254 42 0 chr1 113449248 113449319 -168744345 + Charlie2 DNA MER1_type 2786 2859 -3 5080 157 32 47 chr1 113449377 113449584 -168744080 + L1MA10 LINE L1 5111 5320 -1014 2464 88 21 74 chr1 113449584 113449977 -168743687 + L1MA1 LINE L1 5892 6262 -40 2089 106 3 3 chr1 113449977 113450281 -168743383 + AluSg SINE Alu 1 304 0 2464 88 21 74 chr1 113450281 113450320 -168743344 + L1MA1 LINE L1 6262 6302 0 5080 157 32 47 chr1 113450320 113451187 -168742477 + L1MA10 LINE L1 5320 6168 -166 911 107 0 30 chr1 113451187 113451356 -168742308 + (GAAA)n Simple_repeat Simple_repeat 4 167 0 5080 157 32 47 chr1 113451356 113451513 -168742151 + L1MA10 LINE L1 6168 6326 -8 816 125 0 0 chr1 113451518 113451630 -168742034 - AluSg/x SINE Alu -18 292 181 198 280 27 27 chr1 113451647 113451722 -168741942 + MIR3 SINE MIR 134 208 0 21 36 0 0 chr1 113451828 113451856 -168741808 + AT_rich Low_complexity Low_complexity 1 28 0 245 206 0 14 chr1 113502303 113502376 -168691288 + (TA)n Simple_repeat Simple_repeat 2 73 0 7223 44 1 11 chr1 113502377 113503933 -168689731 + L1PA5 LINE L1 4604 6149 -5 410 316 150 31 chr1 113504188 113504640 -168689024 - L2 LINE L2 -353 2961 2456 2300 102 0 3 chr1 113505599 113505904 -168687760 - AluSq SINE Alu -9 304 1 1617 35 0 15 chr1 113505938 113506136 -168687528 - MER107 DNA MER1_type 0 197 3 192 275 275 11 chr1 113506142 113506233 -168687431 + MIR SINE MIR 20 134 -74 551 238 35 21 chr1 113506675 113506818 -168686846 + HsTC2 DNA Tc2 4 148 -1750 620 258 25 18 chr1 113506878 113507230 -168686434 + HsTC2 DNA Tc2 1300 1764 -134 14343 133 30 9 chr1 113507785 113509570 -168684094 - Tigger1 DNA MER2_type 0 2418 672 2374 82 0 0 chr1 113509570 113509862 -168683802 + AluY SINE Alu 1 292 -19 14343 133 30 9 chr1 113509862 113509932 -168683732 - Tigger1 DNA MER2_type -1746 672 605 2228 115 0 6 chr1 113509932 113510244 -168683420 - AluSx SINE Alu -2 310 1 14343 133 30 9 chr1 113510244 113510755 -168682909 - Tigger1 DNA MER2_type -1813 605 1 290 256 100 0 chr1 113511632 113511722 -168681942 - MARNA DNA Mariner -397 189 91 2102 110 7 7 chr1 113511736 113512036 -168681628 - AluSx SINE Alu -12 300 1 317 299 40 94 chr1 113512108 113512309 -168681355 + L1ME LINE L1 5492 5681 -440 696 80 35 26 chr1 113512847 113512960 -168680704 + L1MB3 LINE L1 6058 6171 -12 24 0 0 0 chr1 113513013 113513037 -168680627 + AT_rich Low_complexity Low_complexity 1 24 0 189 176 0 0 chr1 113513576 113513610 -168680054 - L2 LINE L2 -556 2758 2725 201 132 105 0 chr1 113513623 113513661 -168680003 + MIR SINE MIR 96 137 -125 629 301 181 16 chr1 113513709 113514283 -168679381 + L2 LINE L2 1829 2497 -817 302 324 101 0 chr1 113514342 113514490 -168679174 + L2 LINE L2 2652 2814 -500 378 0 0 0 chr1 113515315 113515357 -168678307 + (CA)n Simple_repeat Simple_repeat 2 43 0 2161 106 7 0 chr1 113516410 113516702 -168676962 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr1 113516703 113516727 -168676937 + AT_rich Low_complexity Low_complexity 1 24 0 434 274 207 39 chr1 113516727 113516935 -168676729 + MIR SINE MIR 20 262 0 237 267 114 22 chr1 113517088 113517225 -168676439 - MIR SINE MIR -6 256 102 203 311 56 11 chr1 113517347 113517437 -168676227 - MIR SINE MIR -95 113 20 1709 167 4 11 chr1 113517622 113517898 -168675766 + AluJb SINE Alu 1 274 -38 1390 170 125 31 chr1 113520071 113520566 -168673098 + L1ME LINE L1 4965 5490 -676 233 373 84 0 chr1 113520622 113520764 -168672900 + L2 LINE L2 2235 2388 -926 21 0 0 0 chr1 113521150 113521171 -168672493 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr1 113521206 113521250 -168672414 + AT_rich Low_complexity Low_complexity 1 44 0 530 346 75 63 chr1 113521634 113522132 -168671532 + L2 LINE L2 2766 3268 -4 360 261 17 0 chr1 113522856 113522971 -168670693 - L1MC4 LINE L1 -2 8040 7924 180 349 184 26 chr1 113523407 113523559 -168670105 - L3b LINE CR1 -50 1533 1358 2542 58 0 3 chr1 113524462 113524772 -168668892 + AluY SINE Alu 1 309 -2 647 279 116 44 chr1 113524981 113525300 -168668364 + L2 LINE L2 2972 3313 0 589 322 68 0 chr1 113525371 113525607 -168668057 + MIR SINE MIR 11 262 0 1914 153 0 27 chr1 113525960 113526260 -168667404 + AluJo SINE Alu 1 292 -20 454 230 0 4 chr1 113526364 113526489 -168667175 + L1ME3 LINE L1 5745 5867 -295 * 692 226 102 80 chr1 113526488 113526762 -168666902 - L1ME3 LINE L1 -9 6153 5874 876 174 74 5 chr1 113527614 113527804 -168665860 - L1MCa LINE L1 -4933 1493 1291 1792 224 3 8 chr1 113527808 113528174 -168665490 - MLT1A1 LTR MaLR -1 364 1 4279 235 109 40 chr1 113528174 113529462 -168664202 - MLT1A1-int LTR MaLR 0 1735 359 797 101 24 178 chr1 113529562 113529668 -168663996 - L1MCa LINE L1 -5389 1037 989 1337 77 0 6 chr1 113529668 113529849 -168663815 - L1PA7 LINE L1 0 6154 5975 797 101 24 178 chr1 113529849 113529989 -168663675 - L1MCa LINE L1 -5437 989 829 388 80 0 0 chr1 113529990 113530040 -168663624 + MSTD LTR MaLR 1 50 -346 2212 163 136 5 chr1 113530042 113530446 -168663218 + MSTB2 LTR MaLR 1 457 0 1334 242 80 9 chr1 113530446 113530772 -168662892 + MSTD LTR MaLR 48 396 0 4717 173 34 1 chr1 113530772 113531578 -168662086 - L1MCa LINE L1 -5594 832 1 710 220 96 24 chr1 113531896 113532105 -168661559 + MLT1J LTR MaLR 288 511 0 203 244 0 0 chr1 113532210 113532255 -168661409 - MIR SINE MIR -112 150 106 254 217 192 102 chr1 113532380 113532509 -168661155 - MIR SINE MIR -46 162 32 22 0 0 0 chr1 113534306 113534328 -168659336 + AT_rich Low_complexity Low_complexity 1 22 0 722 265 77 30 chr1 113534926 113535160 -168658504 + MIR SINE MIR 18 262 0 224 260 120 0 chr1 113535163 113535263 -168658401 + MIR SINE MIR 151 262 0 182 360 11 34 chr1 113536579 113536668 -168656996 - L2 LINE L2 -642 2672 2586 1990 111 55 7 chr1 113537898 113538187 -168655477 - AluSg SINE Alu -7 303 1 348 344 126 44 chr1 113538776 113539507 -168654157 + L2 LINE L2 2429 3225 -47 1223 124 115 22 chr1 113539771 113539997 -168653667 - MSTA LTR MaLR -11 417 171 544 296 49 29 chr1 113540141 113540349 -168653315 - MIR SINE MIR -30 232 20 1974 183 18 27 chr1 113540470 113540919 -168652745 + L1MB7 LINE L1 5740 6184 0 220 263 16 72 chr1 113540919 113541092 -168652572 - MER5A DNA MER1_type -31 147 24 21 0 0 0 chr1 113542162 113542183 -168651481 + AT_rich Low_complexity Low_complexity 1 21 0 2213 89 0 20 chr1 113543599 113543901 -168649763 + AluSc SINE Alu 1 296 -13 24 85 0 0 chr1 113544122 113544181 -168649483 + AT_rich Low_complexity Low_complexity 1 59 0 2038 106 0 0 chr1 113544424 113544688 -168648976 - AluSg SINE Alu -44 266 3 2576 82 6 19 chr1 113546394 113546760 -168646904 - L1PB1 LINE L1 0 6151 5791 352 632 6 0 chr1 113546760 113546923 -168646741 + (TG)n Simple_repeat Simple_repeat 2 165 0 514 151 32 0 chr1 113546925 113547018 -168646646 - L1PB1 LINE L1 -362 5792 5697 205 345 11 0 chr1 113547212 113547299 -168646365 + L2 LINE L2 2660 2747 -567 267 358 92 45 chr1 113547793 113548218 -168645446 + L2 LINE L2 2821 3265 -7 399 241 0 18 chr1 113549000 113549166 -168644498 + (TA)n Simple_repeat Simple_repeat 2 164 0 479 320 83 0 chr1 113549173 113549329 -168644335 - Charlie8 DNA MER1_type -2154 263 95 192 139 56 0 chr1 113549734 113549770 -168643894 + L2 LINE L2 3263 3300 -13 186 103 0 0 chr1 113549770 113549799 -168643865 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 754 237 56 19 chr1 113549893 113550108 -168643556 + L1MB3 LINE L1 5859 6081 -102 572 168 0 0 chr1 113550214 113550309 -168643355 - MSTA LTR MaLR -333 95 1 9173 137 25 35 chr1 113550314 113551901 -168641763 - MSTA-int LTR MaLR -6 1574 4 2154 139 82 17 chr1 113551904 113552306 -168641358 - MSTA LTR MaLR 0 428 1 378 323 191 26 chr1 113552711 113553219 -168640445 + L2 LINE L2 1619 2210 -1104 309 197 0 0 chr1 113553254 113553320 -168640344 + CT-rich Low_complexity Low_complexity 2 67 0 444 148 53 3 chr1 113553494 113553598 -168640066 - L1PA16 LINE L1 -243 5913 5806 1820 231 91 32 chr1 113553599 113553687 -168639977 - L1ME2 LINE L1 -33 6131 6050 1755 159 17 24 chr1 113553687 113553983 -168639681 + AluJb SINE Alu 1 294 -18 1820 231 91 32 chr1 113553983 113554807 -168638857 - L1ME2 LINE L1 -114 6050 5104 1222 203 95 16 chr1 113554810 113555179 -168638485 - MER97a DNA MER1_type? -100 794 397 1647 190 26 29 chr1 113555187 113555442 -168638222 - MER58B DNA MER1_type -2079 341 86 1990 56 8 4 chr1 113555442 113555694 -168637970 + AluY SINE Alu 1 253 -58 1647 190 26 29 chr1 113555694 113555780 -168637884 - MER58B DNA MER1_type -2334 86 1 423 287 178 49 chr1 113555806 113556172 -168637492 - L1MEd LINE L1 -5699 420 8 250 266 31 0 chr1 113556779 113556843 -168636821 + L2 LINE L2 2223 2288 -1026 245 305 0 95 chr1 113556848 113556953 -168636711 - L2 LINE L2 -2 3311 3217 248 303 0 56 chr1 113557679 113557768 -168635896 - L3 LINE CR1 -37 1540 1457 198 0 0 0 chr1 113559643 113559665 -168633999 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 417 285 89 0 chr1 113560083 113560206 -168633458 - MIR SINE MIR -29 233 100 274 237 8 114 chr1 113560495 113560626 -168633038 - MIR SINE MIR -12 250 134 735 168 0 15 chr1 113561509 113561640 -168632024 - FLAM_A SINE Alu -3 130 2 2216 36 0 0 chr1 113563113 113563409 -168630255 + AluY SINE Alu 33 328 0 837 221 72 5 chr1 113564161 113564369 -168629295 - MER58A DNA MER1_type 0 224 3 195 69 0 0 chr1 113564658 113564687 -168628977 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 602 356 42 21 chr1 113565090 113565379 -168628285 + MLT1K LTR MaLR 2 296 -292 369 0 0 0 chr1 113565613 113565654 -168628010 + (TG)n Simple_repeat Simple_repeat 1 41 0 330 316 103 16 chr1 113567053 113567306 -168626358 + L2 LINE L2 1803 2077 -1237 1982 152 67 0 chr1 113567307 113567650 -168626014 + MER47A DNA MER2_type 1 366 0 1693 139 43 101 chr1 113567701 113568069 -168625595 + MLT2C1 LTR ERVL 1 347 -50 1616 171 75 6 chr1 113568121 113568442 -168625222 + MER2 DNA MER2_type 1 343 -1 272 345 55 29 chr1 113568481 113568586 -168625078 + L2 LINE L2 2148 2249 -1065 2588 59 0 0 chr1 113568586 113568893 -168624771 - AluY SINE Alu -4 307 1 272 345 55 29 chr1 113568893 113569097 -168624567 + L2 LINE L2 2249 2465 -849 1872 187 75 27 chr1 113569142 113569581 -168624083 + MLT1C LTR MaLR 8 467 0 612 180 9 0 chr1 113569649 113569760 -168623904 - FLAM_C SINE Alu -8 135 24 195 369 47 7 chr1 113569857 113570006 -168623658 + L2 LINE L2 2132 2286 -1028 585 237 41 35 chr1 113570091 113570260 -168623404 - MIR SINE MIR -44 218 49 921 178 57 0 chr1 113570428 113570585 -168623079 + FRAM SINE Alu 1 162 -14 275 333 75 67 chr1 113570896 113571241 -168622423 - L2 LINE L2 -632 2682 2335 21 36 0 0 chr1 113571458 113571486 -168622178 + AT_rich Low_complexity Low_complexity 1 28 0 180 319 121 11 chr1 113572280 113572371 -168621293 - MIR3 SINE MIR -21 187 87 537 265 153 14 chr1 113572373 113572588 -168621076 - MIR SINE MIR -10 252 8 1968 148 27 27 chr1 113572638 113573004 -168620660 + THE1C LTR MaLR 1 366 -9 267 31 0 0 chr1 113573004 113573036 -168620628 + (CTA)n Simple_repeat Simple_repeat 3 34 0 316 323 97 58 chr1 113573075 113573230 -168620434 + L2 LINE L2 3112 3272 0 769 255 55 13 chr1 113573448 113573758 -168619906 - L1MEc LINE L1 -2896 3319 2997 866 199 6 6 chr1 113573762 113573923 -168619741 - AluJb SINE Alu -24 288 128 1111 203 35 13 chr1 113573923 113574234 -168619430 - L1MEc LINE L1 -3216 2999 2682 444 306 12 29 chr1 113574310 113574483 -168619181 + CT-rich Low_complexity Low_complexity 1 170 0 2013 224 89 66 chr1 113574667 113575965 -168617699 - L1MEc LINE L1 -3579 2636 1345 2028 190 8 3 chr1 113576039 113576402 -168617262 - MLT1A1 LTR MaLR 0 365 1 235 210 57 73 chr1 113576435 113576559 -168617105 - MER69 DNA AcHobo -375 2151 2030 * 1768 284 27 21 chr1 113576548 113576817 -168616847 - MER69 DNA AcHobo -2006 520 245 1648 208 3 10 chr1 113576817 113577129 -168616535 - AluJo SINE Alu -2 310 1 1768 284 27 21 chr1 113577129 113577376 -168616288 - MER69 DNA AcHobo -2281 245 1 957 222 9 18 chr1 113577657 113577882 -168615782 + AluY SINE Alu 3 225 -86 615 124 0 0 chr1 113577991 113578088 -168615576 + AluY SINE Alu 155 251 -60 243 88 0 0 chr1 113578090 113578124 -168615540 + (A)n Simple_repeat Simple_repeat 1 34 0 2314 113 0 0 chr1 113578544 113578846 -168614818 + AluSg SINE Alu 1 302 -8 261 262 39 78 chr1 113579500 113579603 -168614061 + MIR SINE MIR 22 120 -142 543 216 20 0 chr1 113579974 113580076 -168613588 + MER81 DNA DNA 11 114 0 693 209 0 0 chr1 113580189 113580304 -168613360 - FLAM_A SINE Alu -18 115 1 25 65 0 0 chr1 113580703 113580749 -168612915 + AT_rich Low_complexity Low_complexity 1 46 0 861 133 0 30 chr1 113580920 113581055 -168612609 + FLAM_C SINE Alu 1 131 -2 39 0 0 0 chr1 113581209 113581248 -168612416 + AT_rich Low_complexity Low_complexity 1 39 0 1510 221 42 90 chr1 113581806 113582395 -168611269 - L2 LINE L2 0 3313 2756 6210 97 26 0 chr1 113582421 113583381 -168610283 - L1PA10 LINE L1 0 6168 5205 362 23 0 0 chr1 113583564 113583607 -168610057 - MER85 DNA T2_type -96 43 1 238 319 14 0 chr1 113583907 113583976 -168609688 - L2 LINE L2 -2 3270 3201 257 216 0 0 chr1 113584041 113584092 -168609572 + L2 LINE L2 3263 3313 0 312 316 79 26 chr1 113584163 113584277 -168609387 + L2 LINE L2 3153 3272 0 21 0 0 0 chr1 113585564 113585585 -168608079 + AT_rich Low_complexity Low_complexity 1 21 0 194 103 0 26 chr1 113586538 113586577 -168607087 + (TA)n Simple_repeat Simple_repeat 1 38 0 840 109 0 0 chr1 113586580 113586699 -168606965 - FLAM_A SINE Alu -13 120 2 228 324 81 54 chr1 113587534 113587645 -168606019 - L2 LINE L2 -9 3263 3150 909 136 0 0 chr1 113588514 113588639 -168605025 - AluSq/x SINE Alu -188 125 1 1187 156 38 0 chr1 113588662 113588873 -168604791 - MER20 DNA MER1_type 0 219 1 287 259 37 65 chr1 113589475 113589583 -168604081 + MLT1K LTR MaLR 132 236 -352 21 0 0 0 chr1 113590325 113590346 -168603318 + AT_rich Low_complexity Low_complexity 1 21 0 553 218 141 21 chr1 113590667 113590809 -168602855 - MIR SINE MIR -103 159 1 427 271 47 31 chr1 113590968 113591097 -168602567 + MLT1K LTR MaLR 111 241 -347 239 185 19 19 chr1 113591743 113591797 -168601867 + GA-rich Low_complexity Low_complexity 3 56 0 394 148 0 0 chr1 113591912 113591973 -168601691 - AluS SINE Alu -247 61 1 270 233 67 0 chr1 113592002 113592062 -168601602 - L2 LINE L2 0 3272 3209 312 345 34 8 chr1 113592766 113592885 -168600779 - L2 LINE L2 0 3272 3151 248 333 39 0 chr1 113593678 113593756 -168599908 + L2 LINE L2 3188 3268 -4 2425 81 0 0 chr1 113594514 113594811 -168598853 - AluY SINE Alu -14 297 1 324 316 51 0 chr1 113596147 113596245 -168597419 + MIR SINE MIR 4 106 -156 506 347 42 76 chr1 113597394 113597803 -168595861 - L2 LINE L2 -1 3271 2877 23 0 0 0 chr1 113598178 113598201 -168595463 + AT_rich Low_complexity Low_complexity 1 23 0 284 130 0 0 chr1 113598445 113598491 -168595173 - Tigger1 DNA MER2_type -899 1519 1474 240 236 118 55 chr1 113598498 113598597 -168595067 - MLT1L LTR MaLR -365 250 145 1702 216 79 17 chr1 113598597 113599103 -168594561 - MER119 DNA MER1_type 0 583 1 2088 146 0 3 chr1 113599325 113599626 -168594038 + AluSx SINE Alu 1 300 -12 204 365 62 0 chr1 113599758 113599854 -168593810 + L2 LINE L2 3167 3268 -4 367 289 26 72 chr1 113600470 113600622 -168593042 + L2 LINE L2 3168 3312 -1 21 0 0 0 chr1 113600914 113600935 -168592729 + AT_rich Low_complexity Low_complexity 1 21 0 2076 112 3 35 chr1 113601469 113601783 -168591881 - AluSx SINE Alu -7 305 2 926 123 80 0 chr1 113602993 113603156 -168590508 - L1MB7 LINE L1 -6 6178 6003 878 227 74 93 chr1 113603156 113603952 -168589712 + L1M4 LINE L1 3198 4158 -1988 344 60 20 0 chr1 113603964 113604014 -168589650 - L1PA6 LINE L1 -3 6151 6101 1628 48 39 0 chr1 113604114 113604322 -168589342 - L1PA4 LINE L1 -34 6121 5906 25 51 0 0 chr1 113604404 113604443 -168589221 + AT_rich Low_complexity Low_complexity 1 39 0 311 353 36 29 chr1 113605520 113605795 -168587869 + L2 LINE L2 2331 2607 -707 617 263 95 22 chr1 113605850 113606192 -168587472 - LTR43 LTR ERV1 -52 478 187 467 327 23 99 chr1 113606708 113607060 -168586604 + L2 LINE L2 2948 3272 0 221 327 62 35 chr1 113607737 113607850 -168585814 - L2 LINE L2 -20 3252 3137 24 0 0 0 chr1 113609057 113609081 -168584583 + AT_rich Low_complexity Low_complexity 1 24 0 411 280 51 0 chr1 113609452 113609570 -168584094 + MER5C DNA MER1_type 1 124 -200 242 147 0 0 chr1 113609627 113609661 -168584003 + MER5C DNA MER1_type 291 324 0 204 280 200 10 chr1 113609667 113609767 -168583897 - MIR SINE MIR -87 175 57 472 273 79 0 chr1 113610079 113610218 -168583446 + MIR3 SINE MIR 42 191 -17 292 300 53 0 chr1 113611095 113611209 -168582455 - MIR SINE MIR -63 145 40 250 203 271 75 chr1 113611491 113611624 -168582040 + MIR SINE MIR 53 211 -51 235 289 52 89 chr1 113611775 113611910 -168581754 + MIR3 SINE MIR 30 159 -49 266 324 46 37 chr1 113612487 113612595 -168581069 - L2 LINE L2 -11 3261 3153 1386 102 13 162 chr1 113613163 113613477 -168580187 + THE1C LTR MaLR 109 375 0 404 184 92 18 chr1 113614408 113614517 -168579147 + L1ME4a LINE L1 5967 6083 -38 2407 59 0 23 chr1 113614661 113614964 -168578700 + AluY SINE Alu 1 296 -15 343 238 71 36 chr1 113616020 113616188 -168577476 - L1MB8 LINE L1 0 6178 6005 245 51 26 0 chr1 113617168 113617207 -168576457 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 1097 217 60 111 chr1 113618345 113619031 -168574633 + L1MDb LINE L1 772 1422 -4987 260 127 28 84 chr1 113619167 113619238 -168574426 - L1M4 LINE L1 -1115 5031 4965 274 335 58 35 chr1 113620339 113620512 -168573152 + L2 LINE L2 2463 2639 -675 685 72 0 52 chr1 113621243 113621340 -168572324 + THE1C LTR MaLR 1 92 -283 22 0 0 0 chr1 113621831 113621853 -168571811 + AT_rich Low_complexity Low_complexity 1 22 0 3548 189 23 7 chr1 113621854 113622589 -168571075 + L1MB3 LINE L1 5435 6181 -2 276 130 0 0 chr1 113623325 113623371 -168570293 + (TC)n Simple_repeat Simple_repeat 1 46 0 214 277 138 0 chr1 113623893 113623958 -168569706 - L2 LINE L2 -5 3267 3194 * 329 274 105 40 chr1 113623947 113624071 -168569593 - MIR SINE MIR -125 137 6 211 284 15 0 chr1 113624255 113624322 -168569342 + (CTA)n Simple_repeat Simple_repeat 1 68 0 260 146 83 0 chr1 113624372 113624420 -168569244 - U2 snRNA snRNA -136 52 1 472 296 130 22 chr1 113624462 113624685 -168568979 + MIR SINE MIR 12 258 -4 24 32 0 0 chr1 113624787 113624818 -168568846 + AT_rich Low_complexity Low_complexity 1 31 0 380 241 70 44 chr1 113626294 113626452 -168567212 + LTR16C LTR ERVL 328 489 -2 492 301 81 0 chr1 113626626 113626762 -168566902 - MIR SINE MIR -104 158 12 743 185 0 15 chr1 113626795 113626930 -168566734 + AluJb SINE Alu 1 133 -179 1641 180 87 26 chr1 113627973 113628317 -168565347 - MLT1A1 LTR MaLR 0 365 1 27 0 0 0 chr1 113628319 113628346 -168565318 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr1 113628706 113628731 -168564933 + AT_rich Low_complexity Low_complexity 1 25 0 1837 159 45 0 chr1 113628854 113629143 -168564521 + AluSx SINE Alu 1 302 -10 1491 177 89 7 chr1 113629149 113629431 -168564233 + AluJo SINE Alu 1 305 -7 1612 235 184 29 chr1 113629431 113629946 -168563718 - MLT1E2 LTR MaLR -31 595 1 206 264 0 0 chr1 113630510 113630563 -168563101 + L2 LINE L2 2607 2659 -655 593 153 161 16 chr1 113630820 113630944 -168562720 + FRAM SINE Alu 20 161 -15 201 211 35 35 chr1 113630958 113631015 -168562649 - L2 LINE L2 -6 3266 3210 * 620 244 204 25 chr1 113630983 113631184 -168562480 - MIR SINE MIR -25 237 1 644 178 129 66 chr1 113631363 113631666 -168561998 - Charlie2 DNA MER1_type -308 2554 2233 570 223 9 134 chr1 113631725 113632008 -168561656 - Charlie2 DNA MER1_type -628 2234 1996 2258 84 0 0 chr1 113632008 113632293 -168561371 + AluY SINE Alu 1 285 -26 570 223 9 134 chr1 113632293 113632337 -168561327 - Charlie2 DNA MER1_type -866 1996 1948 243 327 35 9 chr1 113632632 113632745 -168560919 + MIR SINE MIR 107 222 -40 25 0 0 0 chr1 113633311 113633336 -168560328 + AT_rich Low_complexity Low_complexity 1 25 0 570 116 11 0 chr1 113634228 113634323 -168559341 - L1MB4 LINE L1 0 6180 6085 255 362 181 0 chr1 113635535 113635662 -168558002 - L2 LINE L2 0 3272 3123 501 213 0 0 chr1 113635992 113636086 -168557578 - MER94 DNA DNA -36 98 5 * 547 256 73 0 chr1 113636084 113636221 -168557443 - MLT1J2 LTR MaLR -303 147 1 246 296 72 24 chr1 113636481 113636606 -168557058 + HAL1b LINE L1 1187 1317 -31 428 360 17 12 chr1 113636744 113636916 -168556748 - L2 LINE L2 -581 2733 2561 325 245 107 100 chr1 113637185 113637447 -168556217 + L1ME4a LINE L1 5679 5947 -174 198 0 0 0 chr1 113637447 113637469 -168556195 + (TG)n Simple_repeat Simple_repeat 1 22 0 325 245 107 100 chr1 113637469 113637635 -168556029 + L1ME4a LINE L1 5947 6110 -11 195 167 0 0 chr1 113638643 113638685 -168554979 + CT-rich Low_complexity Low_complexity 1 42 0 6029 79 11 7 chr1 113638688 113639848 -168553816 - L1PA7 LINE L1 -5 6149 4950 10387 97 4 9 chr1 113639848 113641365 -168552299 + L1PA7 LINE L1 3436 4944 -1202 26 30 0 0 chr1 113641519 113641552 -168552112 + AT_rich Low_complexity Low_complexity 1 33 0 856 119 8 0 chr1 113643935 113644053 -168549611 + AluSg/x SINE Alu 174 292 -20 495 285 31 0 chr1 113645346 113645476 -168548188 + MIR SINE MIR 7 140 -122 1417 243 207 18 chr1 113645615 113646126 -168547538 + L2 LINE L2 1781 2388 -926 244 177 0 32 chr1 113646164 113646226 -168547438 + MER50 LTR ERV1 401 460 -274 656 283 100 49 chr1 113646303 113646756 -168546908 + MLT1J2 LTR MaLR 1 446 -4 1474 276 98 13 chr1 113646936 113647718 -168545946 + L2 LINE L2 2449 3313 0 305 274 57 38 chr1 113647774 113647880 -168545784 + MIR SINE MIR 35 142 -66 2047 130 0 16 chr1 113648344 113648651 -168545013 - AluSx SINE Alu -10 302 1 507 182 41 33 chr1 113649839 113649960 -168543704 + MER46C DNA MER2_type 1 122 -216 1853 166 10 3 chr1 113650128 113650424 -168543240 - AluJb SINE Alu -14 298 1 975 138 0 20 chr1 113651456 113651608 -168542056 + Tigger2 DNA MER2_type 1 149 -2569 2176 89 0 0 chr1 113651617 113651942 -168541722 + AluSx SINE Alu 1 325 0 601 148 0 0 chr1 113651953 113652041 -168541623 + AluJ/FLAM SINE Alu 1 88 -224 233 77 0 0 chr1 113652152 113652191 -168541473 + Alu SINE Alu 264 302 0 463 90 0 120 chr1 113652212 113652312 -168541352 + Tigger2 DNA MER2_type 145 232 -2486 2127 136 27 27 chr1 113652312 113652680 -168540984 + Tigger2 DNA MER2_type 2351 2718 0 2147 163 33 3 chr1 113653458 113653850 -168539814 + L1MC1 LINE L1 5820 6223 -110 2133 90 7 0 chr1 113653855 113654180 -168539484 + AluSg1 SINE Alu 1 327 0 561 225 21 7 chr1 113654613 113654755 -168538909 + L1MC5 LINE L1 7744 7887 -74 1803 181 68 135 chr1 113656154 113657090 -168536574 - Charlie2 DNA MER1_type -1 2861 1988 2051 97 11 0 chr1 113657100 113657406 -168536258 + AluY SINE Alu 1 309 0 448 255 135 51 chr1 113657697 113657997 -168535667 - MLT1H1 LTR MaLR 0 555 251 469 271 43 32 chr1 113658145 113658425 -168535239 - L1ME LINE L1 -4832 1146 864 333 144 56 44 chr1 113658544 113658634 -168535030 - L1ME LINE L1 -5301 769 679 490 324 34 29 chr1 113659040 113659244 -168534420 - L1ME LINE L1 -5625 445 241 420 263 85 0 chr1 113659301 113659419 -168534245 - L1ME LINE L1 -5940 130 3 1999 123 0 20 chr1 113659534 113659862 -168533802 + AluSx SINE Alu 1 312 0 1753 111 119 32 chr1 113661146 113661490 -168532174 - THE1C LTR MaLR -1 374 1 2011 148 3 7 chr1 113662636 113662934 -168530730 + AluJb SINE Alu 1 297 -15 1722 137 43 47 chr1 113662945 113663245 -168530419 + AluJb SINE Alu 1 299 -13 1902 140 0 4 chr1 113664401 113664680 -168528984 + AluSg SINE Alu 1 278 -32 229 317 0 0 chr1 113664780 113664840 -168528824 + GA-rich Low_complexity Low_complexity 2 61 0 419 253 40 85 chr1 113665327 113665655 -168528009 - L1ME1 LINE L1 0 6178 5863 237 273 0 0 chr1 113666095 113666150 -168527514 + (CA)n Simple_repeat Simple_repeat 2 56 0 2367 74 0 0 chr1 113666378 113666661 -168527003 + AluSg SINE Alu 1 283 -27 197 225 0 0 chr1 113666696 113666736 -168526928 + L2 LINE L2 3232 3271 -1 21 36 0 0 chr1 113667383 113667411 -168526253 + AT_rich Low_complexity Low_complexity 1 28 0 1677 179 7 7 chr1 113667865 113667900 -168525764 - AluJo SINE Alu 0 841 807 1574 198 40 40 chr1 113667900 113668274 -168525390 + THE1C LTR MaLR 1 374 -1 1677 179 7 7 chr1 113668274 113668706 -168524958 - AluJo SINE Alu -33 808 1 31 26 0 0 chr1 113668902 113668940 -168524724 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 113669229 113669252 -168524412 + AT_rich Low_complexity Low_complexity 1 23 0 1536 123 0 0 chr1 113669305 113669517 -168524147 - AluSg/x SINE Alu -17 293 82 416 298 22 76 chr1 113670063 113670288 -168523376 - MIR SINE MIR -13 249 37 381 269 37 0 chr1 113670409 113670517 -168523147 - L2 LINE L2 -1 3312 3201 235 346 89 0 chr1 113670554 113670655 -168523009 - L2 LINE L2 -262 3051 2942 758 235 103 5 chr1 113670678 113671011 -168522653 + LTR16A LTR ERVL 24 447 -3 330 318 61 37 chr1 113671033 113671247 -168522417 - L2 LINE L2 -410 2904 2686 1170 173 30 5 chr1 113671247 113671449 -168522215 + AluJb SINE Alu 1 207 -105 415 197 0 0 chr1 113671596 113671662 -168522002 + AluJb SINE Alu 205 270 -42 457 194 28 19 chr1 113671662 113671770 -168521894 + THE1C LTR MaLR 263 371 -4 243 0 0 0 chr1 113671770 113671797 -168521867 + (TTTC)n Simple_repeat Simple_repeat 1 27 0 552 224 18 6 chr1 113671813 113671978 -168521686 + GA-rich Low_complexity Low_complexity 2 168 0 476 186 95 186 chr1 113673386 113673649 -168520015 - MER8 DNA MER2_type 0 239 1 928 157 11 38 chr1 113674167 113674352 -168519312 - MLT1D LTR MaLR -323 182 3 418 216 56 32 chr1 113674764 113674889 -168518775 + LTR67 LTR ERVL 428 555 -2 331 235 29 0 chr1 113675406 113675474 -168518190 - L2 LINE L2 -16 3256 3187 260 215 15 46 chr1 113675476 113675541 -168518123 + L2 LINE L2 3208 3270 -2 207 250 42 0 chr1 113675539 113675587 -168518077 - L2 LINE L2 -87 3185 3136 * 300 249 103 38 chr1 113676256 113676398 -168517266 + MIR SINE MIR 36 184 -61 490 264 132 10 chr1 113676449 113676646 -168517018 - MIR SINE MIR -28 234 14 22 0 0 0 chr1 113676870 113676892 -168516772 + AT_rich Low_complexity Low_complexity 1 22 0 271 339 26 17 chr1 113676940 113677055 -168516609 + MIR SINE MIR 5 120 -142 230 319 0 43 chr1 113677135 113677229 -168516435 + LTR33 LTR ERVL 47 136 -385 458 299 41 23 chr1 113677334 113677555 -168516109 + LTR33 LTR ERVL 297 521 0 1959 157 7 0 chr1 113677610 113677909 -168515755 + AluSx SINE Alu 1 301 -11 2024 141 0 0 chr1 113678422 113678739 -168514925 - AluSx SINE Alu 0 312 1 2096 116 7 7 chr1 113678982 113679284 -168514380 - AluSq SINE Alu -8 305 4 278 277 208 0 chr1 113680267 113680368 -168513296 + L2 LINE L2 3192 3313 0 1621 186 3 17 chr1 113680412 113680703 -168512961 + AluJo SINE Alu 10 296 -16 2028 125 7 0 chr1 113681168 113681472 -168512192 - AluSx SINE Alu 0 306 1 207 0 0 0 chr1 113681892 113681915 -168511749 + (A)n Simple_repeat Simple_repeat 1 23 0 528 311 115 52 chr1 113682091 113682535 -168511129 - L2 LINE L2 0 3313 2842 1707 138 16 72 chr1 113682605 113682924 -168510740 - AluJb SINE Alu -11 301 1 1236 158 140 54 chr1 113682989 113683324 -168510340 - LTR47A LTR ERVL -87 365 2 2563 152 93 47 chr1 113683326 113684212 -168509452 - LTR49-int LTR ERV1 -648 5683 5128 876 196 74 0 chr1 113684214 113684377 -168509287 + MER21B LTR ERV1 329 503 -360 321 307 0 11 chr1 113684390 113684478 -168509186 - MIR SINE MIR -152 110 24 528 173 0 0 chr1 113684583 113684664 -168509000 - FLAM_C SINE Alu -26 117 37 314 250 83 0 chr1 113684679 113684763 -168508901 + L1M4c LINE L1 777 867 -5517 644 111 20 0 chr1 113684784 113684883 -168508781 - LTR49-int LTR ERV1 -1192 5139 5039 27 0 0 0 chr1 113684938 113684965 -168508699 + AT_rich Low_complexity Low_complexity 1 27 0 2183 119 0 0 chr1 113684965 113685251 -168508413 - AluSx SINE Alu -26 286 1 6064 189 7 5 chr1 113685278 113686628 -168507036 + L1MC1 LINE L1 4708 6064 -269 2335 75 0 0 chr1 113686628 113686908 -168506756 - AluY SINE Alu -20 291 12 6064 189 7 5 chr1 113686908 113687173 -168506491 + L1MC1 LINE L1 6064 6327 -6 679 288 120 37 chr1 113687207 113687589 -168506075 - L2 LINE L2 -606 2708 2295 808 254 89 25 chr1 113688638 113688918 -168504746 - L2 LINE L2 -84 3229 2932 31 26 0 0 chr1 113689643 113689681 -168503983 + AT_rich Low_complexity Low_complexity 1 38 0 474 222 14 97 chr1 113690000 113690144 -168503520 - L2 LINE L2 -18 3295 3164 348 161 0 0 chr1 113690225 113690287 -168503377 + CT-rich Low_complexity Low_complexity 1 62 0 2156 136 3 0 chr1 113690566 113690868 -168502796 - AluSx SINE Alu -9 303 1 333 0 0 0 chr1 113691300 113691337 -168502327 + (TG)n Simple_repeat Simple_repeat 2 38 0 732 291 97 15 chr1 113691969 113692237 -168501427 + L2 LINE L2 3024 3313 0 295 346 60 60 chr1 113692544 113692998 -168500666 - L2 LINE L2 -675 2639 2186 621 196 59 39 chr1 113693078 113693231 -168500433 + MIR SINE MIR 79 234 -28 292 356 108 0 chr1 113693283 113693533 -168500131 - L2 LINE L2 -1217 2097 1821 795 280 120 63 chr1 113693535 113694103 -168499561 + HAL1 LINE L1 1 600 -1907 254 141 16 16 chr1 113694523 113694587 -168499077 + HAL1 LINE L1 1039 1102 -1405 217 195 0 0 chr1 113694612 113694653 -168499011 + L2 LINE L2 3267 3307 -6 333 287 24 83 chr1 113694723 113694977 -168498687 + HAL1 LINE L1 1208 1446 -1061 560 192 50 38 chr1 113695008 113695177 -168498487 - MLT1F LTR MaLR 0 595 371 827 20 10 0 chr1 113695258 113695359 -168498305 + (TC)n Simple_repeat Simple_repeat 1 102 0 216 0 0 0 chr1 113695359 113695383 -168498281 + (TCC)n Simple_repeat Simple_repeat 2 25 0 1347 153 21 176 chr1 113695403 113695835 -168497829 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr1 113695878 113695898 -168497766 + (GA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr1 113695911 113695933 -168497731 + (TTA)n Simple_repeat Simple_repeat 3 24 0 507 245 105 0 chr1 113695933 113696076 -168497588 - MLT1F LTR MaLR -398 197 40 1283 245 176 4 chr1 113696085 113696575 -168497089 + HAL1 LINE L1 1459 2032 -475 460 171 59 6 chr1 113696607 113696777 -168496887 + (TA)n Simple_repeat Simple_repeat 1 179 0 251 193 18 0 chr1 113696786 113696843 -168496821 + HAL1 LINE L1 2089 2146 -361 340 258 121 16 chr1 113696970 113697052 -168496612 + HAL1 LINE L1 2234 2306 -201 2437 64 0 0 chr1 113697052 113697347 -168496317 + AluY SINE Alu 1 295 -16 340 258 121 16 chr1 113697347 113697512 -168496152 + HAL1 LINE L1 2306 2507 0 2491 222 95 27 chr1 113697661 113697782 -168495882 - MER69 DNA AcHobo -29 2497 2386 2513 75 0 3 chr1 113697782 113698088 -168495576 + AluSg SINE Alu 1 305 -5 2491 222 95 27 chr1 113698088 113698927 -168494737 - MER69 DNA AcHobo -140 2386 1472 1021 140 0 14 chr1 113699001 113699144 -168494520 + AluSq/x SINE Alu 1 141 -172 2221 116 0 0 chr1 113699152 113699444 -168494220 + AluSx SINE Alu 21 312 0 580 242 25 13 chr1 113699447 113699604 -168494060 - MER69 DNA AcHobo -1833 693 535 718 239 74 49 chr1 113699675 113699918 -168493746 - MER69 DNA AcHobo -2276 250 2 345 268 98 31 chr1 113699919 113700113 -168493551 + HAL1 LINE L1 135 341 -2166 645 137 20 0 chr1 113700249 113700351 -168493313 - U13 snRNA snRNA 0 104 1 25 31 0 0 chr1 113700360 113700392 -168493272 + AT_rich Low_complexity Low_complexity 1 32 0 799 281 98 47 chr1 113700450 113701602 -168492062 + HAL1 LINE L1 425 1690 -817 261 291 76 38 chr1 113701608 113701845 -168491819 + HAL1 LINE L1 2251 2496 -11 11646 80 3 0 chr1 113701953 113704324 -168489340 + L1PA7 LINE L1 3793 6170 0 592 251 77 16 chr1 113704376 113704559 -168489105 - MIR SINE MIR -57 205 12 1716 146 0 45 chr1 113705040 113705348 -168488316 + AluJo SINE Alu 14 307 -5 2351 106 3 0 chr1 113705397 113705700 -168487964 + AluSx SINE Alu 1 304 -8 391 257 106 0 chr1 113706287 113706400 -168487264 + MIR SINE MIR 81 205 -57 337 315 62 14 chr1 113706712 113706858 -168486806 + MIR SINE MIR 50 202 -60 240 35 0 0 chr1 113708312 113708341 -168485323 + (T)n Simple_repeat Simple_repeat 1 29 0 1394 168 0 40 chr1 113714745 113714995 -168478669 - AluJo SINE Alu -19 293 54 1258 248 51 14 chr1 113715751 113716102 -168477562 + L1ME2 LINE L1 5762 6125 -39 1953 138 3 31 chr1 113716211 113716531 -168477133 + AluJb SINE Alu 1 311 -1 1417 127 0 53 chr1 113717043 113717240 -168476424 - L1PA16 LINE L1 -9 6157 5972 1632 190 17 0 chr1 113717240 113717529 -168476135 - AluJo SINE Alu -18 294 1 1417 127 0 53 chr1 113717529 113717559 -168476105 - L1PA16 LINE L1 -194 5972 5942 243 304 43 0 chr1 113717963 113718032 -168475632 - L2 LINE L2 -46 3226 3155 2206 128 0 0 chr1 113718109 113718414 -168475250 - AluSx SINE Alu -7 305 1 22 70 0 0 chr1 113718546 113718589 -168475075 + AT_rich Low_complexity Low_complexity 1 43 0 2327 109 0 0 chr1 113719790 113720094 -168473570 + AluSg SINE Alu 1 304 -6 1424 143 49 63 chr1 113720140 113720426 -168473238 - AluJo SINE Alu -30 282 1 819 142 7 40 chr1 113720696 113720844 -168472820 - FLAM_C SINE Alu 0 143 1 23 0 0 0 chr1 113721385 113721408 -168472256 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 113721523 113721544 -168472120 + AT_rich Low_complexity Low_complexity 1 21 0 599 304 91 19 chr1 113723242 113723505 -168470159 - MER102a DNA MER1_type -13 317 36 2160 47 0 4 chr1 113723851 113724108 -168469556 - AluY SINE Alu -17 294 39 1295 165 139 55 chr1 113724268 113724541 -168469123 + AluJo SINE Alu 5 300 -2 319 292 0 21 chr1 113724586 113724682 -168468982 + L1MC4 LINE L1 6610 6703 -1339 511 152 30 0 chr1 113724756 113724920 -168468744 + (TA)n Simple_repeat Simple_repeat 1 169 0 47 0 0 0 chr1 113724922 113724969 -168468695 + AT_rich Low_complexity Low_complexity 1 47 0 907 114 9 11 chr1 113724969 113725323 -168468341 + (TA)n Simple_repeat Simple_repeat 1 353 0 195 286 98 36 chr1 113725419 113725531 -168468133 - MIR SINE MIR -83 179 61 324 243 0 0 chr1 113725592 113725662 -168468002 - MIR3 SINE MIR -10 198 129 1395 186 32 7 chr1 113726398 113726718 -168466946 - AluJb SINE Alu 0 312 1 395 310 0 9 chr1 113726867 113726980 -168466684 + MIR SINE MIR 37 148 -114 2369 93 0 3 chr1 113726984 113727284 -168466380 + AluSx SINE Alu 6 304 -8 2008 62 0 92 chr1 113727387 113727691 -168465973 + AluY SINE Alu 34 309 -2 2136 99 0 11 chr1 113728135 113728439 -168465225 + AluY SINE Alu 1 301 0 380 233 133 0 chr1 113728496 113728586 -168465078 - L2 LINE L2 0 3313 3212 1828 174 0 3 chr1 113729022 113729321 -168464343 + AluJb SINE Alu 1 298 -14 760 28 19 9 chr1 113729982 113730089 -168463575 + (TTTC)n Simple_repeat Simple_repeat 3 110 0 357 270 25 58 chr1 113730960 113731102 -168462562 - MIR SINE MIR -46 162 26 721 169 34 0 chr1 113731514 113731632 -168462032 - FLAM_C SINE Alu -11 122 1 261 0 0 0 chr1 113732584 113732613 -168461051 + (T)n Simple_repeat Simple_repeat 1 29 0 187 243 0 0 chr1 113734781 113734818 -168458846 + MIR SINE MIR 223 259 -3 2174 92 4 7 chr1 113734854 113735158 -168458506 - AluSc SINE Alu 0 303 1 1947 162 0 7 chr1 113735161 113735463 -168458201 - AluJo SINE Alu -12 300 1 1362 194 45 52 chr1 113735544 113735854 -168457810 + AluJb SINE Alu 3 310 -2 1106 298 103 50 chr1 113736518 113737316 -168456348 + L2 LINE L2 1395 2234 -1080 758 271 73 65 chr1 113737330 113737482 -168456182 + LTR16A LTR ERVL 16 165 -292 1717 166 0 44 chr1 113737482 113737802 -168455862 - AluSx SINE Alu -6 306 1 758 271 73 65 chr1 113737802 113738040 -168455624 + LTR16A LTR ERVL 165 400 -57 489 266 18 0 chr1 113738131 113738244 -168455420 + LTR16A LTR ERVL 159 273 -177 3298 308 82 75 chr1 113738255 113740578 -168453086 + HERV16 LTR ERVL 1942 4281 -715 264 254 0 0 chr1 113740579 113740638 -168453026 + L1ME2 LINE L1 3522 3580 -2566 1738 142 3 83 chr1 113740638 113740843 -168452821 - AluJo SINE Alu 0 312 143 1822 138 7 37 chr1 113740843 113741139 -168452525 - AluSx SINE Alu -25 287 1 1738 142 3 83 chr1 113741139 113741272 -168452392 - AluJo SINE Alu -169 143 1 1788 166 10 3 chr1 113741297 113741592 -168452072 - AluJo SINE Alu -15 297 1 1221 232 21 47 chr1 113741594 113742072 -168451592 + L1ME2 LINE L1 3588 4038 -2108 1721 188 0 7 chr1 113742859 113743147 -168450517 + AluJo SINE Alu 3 288 -24 2080 231 91 105 chr1 113743153 113743469 -168450195 + L1ME2 LINE L1 4038 4357 -1789 10436 37 7 0 chr1 113743469 113745415 -168448249 - L1PA5 LINE L1 -8 6146 4193 2080 231 91 105 chr1 113745415 113746311 -168447353 + L1ME2 LINE L1 4357 5233 -913 204 143 0 0 chr1 113746332 113746374 -168447290 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 1927 212 65 17 chr1 113746385 113746999 -168446665 + L1ME2 LINE L1 5468 6145 -17 452 129 186 0 chr1 113747003 113747073 -168446591 - FRAM/FAM SINE Alu -93 83 1 1339 208 38 35 chr1 113747094 113747411 -168446253 + L1ME2 LINE L1 5828 6145 -19 433 297 40 86 chr1 113747480 113747783 -168445881 + L1MC/D LINE L1 5497 5785 -2023 396 171 0 14 chr1 113747858 113747928 -168445736 + Tigger2 DNA MER2_type 1 69 -2649 * 2009 103 169 26 chr1 113747918 113748308 -168445356 + Tigger2 DNA MER2_type 2273 2718 0 766 287 49 5 chr1 113748635 113748858 -168444806 - MIR SINE MIR -26 236 4 695 303 110 23 chr1 113748987 113749193 -168444471 + L2 LINE L2 2848 3035 -278 2019 155 3 0 chr1 113749193 113749502 -168444162 - AluSx SINE Alu -2 310 1 695 303 110 23 chr1 113749502 113749724 -168443940 + L2 LINE L2 3035 3313 0 421 132 0 0 chr1 113749845 113749913 -168443751 + MIR SINE MIR 129 196 -66 377 234 53 21 chr1 113750903 113750997 -168442667 + L2 LINE L2 3174 3270 -2 1629 179 11 11 chr1 113751072 113751357 -168442307 + AluJo SINE Alu 5 289 -23 324 269 156 21 chr1 113752262 113752315 -168441349 + MIR SINE MIR 38 82 -180 684 198 9 0 chr1 113752315 113752426 -168441238 - MER81 DNA DNA 0 114 3 324 269 156 21 chr1 113752426 113752513 -168441151 + MIR SINE MIR 82 197 -65 400 314 107 0 chr1 113753340 113753499 -168440165 - MIR SINE MIR -50 212 37 185 171 146 0 chr1 113753738 113753779 -168439885 + MER5C DNA MER1_type 30 76 -248 520 332 153 7 chr1 113754060 113754361 -168439303 + L2 LINE L2 2608 2952 -362 331 241 131 66 chr1 113755370 113755507 -168438157 - MIR SINE MIR -47 215 70 2052 152 27 62 chr1 113755944 113756345 -168437319 + MLT1B LTR MaLR 4 390 0 219 270 135 0 chr1 113756466 113756540 -168437124 - MIR SINE MIR -4 258 175 3519 193 95 9 chr1 113756549 113757305 -168436359 + L1MC4a LINE L1 7000 7995 0 816 122 128 12 chr1 113757312 113757482 -168436182 + L1MB1 LINE L1 6014 6168 0 274 320 30 10 chr1 113757501 113757601 -168436063 - MIR SINE MIR -156 106 5 312 120 0 0 chr1 113758026 113758076 -168435588 + (A)n Simple_repeat Simple_repeat 1 50 0 2561 173 50 14 chr1 113758143 113758593 -168435071 - LTR26E LTR ERV1 -17 605 193 1504 183 0 12 chr1 113758593 113758850 -168434814 + AluJo SINE Alu 40 293 -19 2561 173 50 14 chr1 113758850 113759051 -168434613 - LTR26E LTR ERV1 -429 193 1 2219 105 10 0 chr1 113759078 113759373 -168434291 + AluSx SINE Alu 1 298 -14 883 132 0 0 chr1 113759383 113759534 -168434130 + AluSg/x SINE Alu 152 302 0 212 250 0 0 chr1 113760406 113760454 -168433210 + MIR SINE MIR 78 125 -137 842 152 8 0 chr1 113760479 113760611 -168433053 + FLAM_C SINE Alu 1 133 -10 921 164 35 18 chr1 113761155 113761326 -168432338 - FRAM SINE Alu -2 174 1 692 190 17 0 chr1 113761582 113761698 -168431966 + FLAM_C SINE Alu 1 118 -15 414 0 0 0 chr1 113761703 113761749 -168431915 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 565 231 35 35 chr1 113761962 113762135 -168431529 - MER5B DNA MER1_type 0 178 6 436 216 17 86 chr1 113762451 113762567 -168431097 + MER5A DNA MER1_type 19 126 -63 524 290 19 31 chr1 113763080 113763242 -168430422 + MARNA DNA Mariner 15 174 -412 205 377 61 53 chr1 113763292 113763634 -168430030 + L2 LINE L2 2839 3183 -89 202 104 0 62 chr1 113763726 113763774 -168429890 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1412 168 21 80 chr1 113763774 113763911 -168429753 - AluJo SINE Alu -41 271 127 343 36 54 0 chr1 113763911 113763967 -168429697 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1938 124 0 41 chr1 113763970 113764261 -168429403 - AluSx SINE Alu -33 279 1 1412 168 21 80 chr1 113764261 113764405 -168429259 - AluJo SINE Alu -187 125 3 235 279 39 19 chr1 113764425 113764529 -168429135 + MARNA DNA Mariner 254 359 -227 896 174 58 12 chr1 113764551 113764723 -168428941 + AluSg/x SINE Alu 129 308 -4 2077 136 0 0 chr1 113765538 113765833 -168427831 + AluSx SINE Alu 1 295 -17 2260 104 0 10 chr1 113766059 113766357 -168427307 - AluSg SINE Alu -15 295 1 1568 254 39 64 chr1 113767340 113767571 -168426093 - L2 LINE L2 -297 3016 2781 1900 168 7 0 chr1 113767571 113767862 -168425802 - AluJb SINE Alu -19 293 1 1568 254 39 64 chr1 113767862 113768124 -168425540 - L2 LINE L2 -532 2781 2514 198 0 0 0 chr1 113768124 113768146 -168425518 + (TA)n Simple_repeat Simple_repeat 2 23 0 2267 113 0 0 chr1 113768146 113768437 -168425227 - AluSg SINE Alu -19 291 1 1568 254 39 64 chr1 113768437 113768603 -168425061 - L2 LINE L2 -797 2516 2375 194 316 132 0 chr1 113770001 113770077 -168423587 + L2 LINE L2 3169 3254 -18 1716 152 37 24 chr1 113770860 113771156 -168422508 - AluJo SINE Alu -12 300 1 597 193 7 57 chr1 113771284 113771424 -168422240 - L2 LINE L2 0 3313 3181 2081 143 0 0 chr1 113772121 113772421 -168421243 - AluSx SINE Alu -10 302 3 1832 160 0 7 chr1 113773236 113773518 -168420146 - AluJb SINE Alu -32 280 1 1735 151 42 18 chr1 113773521 113773806 -168419858 - AluJo SINE Alu -20 292 1 697 238 115 8 chr1 113773832 113774067 -168419597 - MIR SINE MIR 0 262 3 183 348 42 17 chr1 113774072 113774190 -168419474 - MIR SINE MIR -71 191 71 219 328 82 16 chr1 113774848 113774970 -168418694 + L3b LINE CR1 1445 1574 -9 743 107 49 0 chr1 113775112 113775234 -168418430 - L1MA5 LINE L1 -2 6298 6171 2987 151 16 12 chr1 113775334 113775818 -168417846 + MER66B LTR ERV1 1 486 0 1090 174 0 11 chr1 113776367 113776545 -168417119 - FRAM SINE Alu 0 176 1 423 299 95 15 chr1 113777127 113777506 -168416158 - LTR16B LTR ERVL 0 464 1 2050 155 0 3 chr1 113777577 113777880 -168415784 - AluSx SINE Alu -10 302 1 192 274 267 34 chr1 113777920 113778066 -168415598 + MIR3 SINE MIR 28 207 -1 200 348 116 0 chr1 113778275 113778387 -168415277 - L2 LINE L2 -27 3245 3121 1239 227 109 41 chr1 113778492 113778932 -168414732 + MER39 LTR ERV1 232 701 -6 1223 221 63 87 chr1 113779599 113780011 -168413653 + MER39 LTR ERV1 5 541 -118 1707 146 14 30 chr1 113780011 113780306 -168413358 - AluJo SINE Alu -22 290 1 1223 221 63 87 chr1 113780306 113780422 -168413242 + MER39 LTR ERV1 541 658 -1 630 187 8 96 chr1 113780543 113780733 -168412931 + MER5A DNA MER1_type 1 186 -3 267 222 125 0 chr1 113782502 113782574 -168411090 + L2 LINE L2 3232 3312 -1 373 147 13 27 chr1 113783040 113783115 -168410549 + MLT2B2 LTR ERVL 1 74 -441 652 229 63 76 chr1 113783210 113783433 -168410231 + MLT2B1 LTR ERVL 66 285 -235 354 80 0 20 chr1 113783412 113783462 -168410202 + MLT2B1 LTR ERVL 472 520 0 * 610 189 0 25 chr1 113783951 113784073 -168409591 - AluJo SINE Alu -75 237 119 1805 161 4 7 chr1 113784389 113784669 -168408995 - AluJo SINE Alu -28 284 6 282 294 0 24 chr1 113784820 113784905 -168408759 + MIR SINE MIR 1 83 -179 513 240 169 0 chr1 113785160 113785314 -168408350 + MIR SINE MIR 59 238 -24 965 279 76 20 chr1 113786067 113786462 -168407202 + MLT1J LTR MaLR 3 419 -92 2018 117 9 62 chr1 113788588 113788913 -168404751 - AluSx SINE Alu -4 308 1 236 232 0 18 chr1 113789342 113789398 -168404266 + MIR3 SINE MIR 139 193 -15 1501 212 148 14 chr1 113789469 113789953 -168403711 + MER39 LTR ERV1 1 707 0 2438 103 0 0 chr1 113791058 113791369 -168402295 - AluSx SINE Alu 0 312 2 31 0 0 0 chr1 113791507 113791538 -168402126 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 113791575 113791597 -168402067 + AT_rich Low_complexity Low_complexity 1 22 0 2131 117 10 7 chr1 113791684 113791982 -168401682 - AluSx SINE Alu -13 299 1 2233 108 0 13 chr1 113792381 113792695 -168400969 - AluY SINE Alu 0 311 2 2377 107 55 3 chr1 113792758 113793104 -168400560 + THE1B LTR MaLR 1 364 0 709 278 112 43 chr1 113793518 113793936 -168399728 - MLT1J2 LTR MaLR -1 449 3 210 357 13 96 chr1 113793991 113794148 -168399516 + L2 LINE L2 2560 2703 -611 236 268 122 0 chr1 113794327 113794409 -168399255 + MIR SINE MIR 1 92 -170 2131 136 55 35 chr1 113795532 113795953 -168397711 + MER51B LTR ERV1 1 377 0 1196 142 8 6 chr1 113797276 113797637 -168396027 - MER61C LTR ERV1 -30 404 2 2224 95 0 20 chr1 113797679 113797975 -168395689 + AluSx SINE Alu 7 296 -16 610 241 45 25 chr1 113798811 113799010 -168394654 - MER110A LTR ERV1 0 468 266 265 167 0 74 chr1 113799021 113799075 -168394589 - MER110A LTR ERV1 -339 129 80 228 292 0 0 chr1 113799155 113799203 -168394461 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 370 320 49 0 chr1 113799203 113799325 -168394339 - L2 LINE L2 0 3313 3186 860 147 0 0 chr1 113799375 113799504 -168394160 - FLAM_C SINE Alu -3 130 2 330 268 122 37 chr1 113799647 113799811 -168393853 + MER5B DNA MER1_type 1 178 0 321 243 0 0 chr1 113800851 113800925 -168392739 - MIR SINE MIR -71 191 118 1662 189 4 0 chr1 113800948 113801228 -168392436 - AluSx SINE Alu -31 281 1 1098 322 162 22 chr1 113801932 113802463 -168391201 - L2 LINE L2 -201 3071 2616 2242 119 138 5 chr1 113802463 113802841 -168390823 - MSTA LTR MaLR 0 428 1 1098 322 162 22 chr1 113802841 113803713 -168389951 - L2 LINE L2 -656 2616 1471 821 308 99 6 chr1 114004774 114005128 -168188536 + MLT1J2 LTR MaLR 30 416 -34 205 265 48 24 chr1 114005606 114005689 -168187975 - L2 LINE L2 0 3313 3229 403 318 38 79 chr1 114005756 114006124 -168187540 + L2 LINE L2 2008 2360 -954 404 208 14 14 chr1 114006250 114006394 -168187270 + (TA)n Simple_repeat Simple_repeat 1 144 0 2584 116 20 5 chr1 114006400 114006796 -168186868 - MLT2A1 LTR ERVL -40 404 3 2225 192 9 0 chr1 114006823 114007265 -168186399 + L1 LINE L1 4648 5093 -1053 5661 118 18 0 chr1 114007271 114008412 -168185252 - L1PA12 LINE L1 -7 6161 5008 686 200 0 7 chr1 114008519 114008669 -168184995 + MLT2B1 LTR ERVL 372 520 0 383 186 0 0 chr1 114008669 114008739 -168184925 + MLT1-int LTR MaLR 663 732 -639 436 209 0 0 chr1 114008863 114008954 -168184710 + MLT1-int LTR MaLR 677 767 -968 1732 197 7 3 chr1 114008985 114009275 -168184389 + AluJb SINE Alu 1 291 -21 1939 232 16 7 chr1 114009337 114009768 -168183896 + MLT1-int LTR MaLR 1301 1735 0 253 283 28 19 chr1 114010074 114010180 -168183484 - L3 LINE CR1 -194 1383 1277 1304 223 45 43 chr1 114010202 114010665 -168182999 + MLT2C2 LTR ERVL 1 464 0 872 326 61 58 chr1 114010670 114011259 -168182405 + L2 LINE L2 2716 3313 0 21 36 0 0 chr1 114011356 114011384 -168182280 + AT_rich Low_complexity Low_complexity 1 28 0 232 125 0 71 chr1 114012632 114012688 -168180976 - MLT2A2 LTR ERVL -2 451 400 220 194 0 0 chr1 114012689 114012725 -168180939 + (TATG)n Simple_repeat Simple_repeat 3 38 0 327 109 0 0 chr1 114012725 114012780 -168180884 + L1 LINE L1 5188 5242 -904 8979 161 7 45 chr1 114012946 114013216 -168180448 - L1P LINE L1 -1179 4967 4688 2087 53 4 0 chr1 114013216 114013480 -168180184 - L1PA4 LINE L1 -2 6153 5889 8979 161 7 45 chr1 114013480 114015127 -168178537 - L1P LINE L1 -1458 4688 3123 22 94 0 0 chr1 114015406 114015470 -168178194 + AT_rich Low_complexity Low_complexity 1 64 0 247 255 79 88 chr1 114015936 114016152 -168177512 - MLT1K LTR MaLR -180 408 195 1359 97 5 10 chr1 114016337 114016532 -168177132 + AluSg/x SINE Alu 115 308 -4 1400 234 49 75 chr1 114016653 114016841 -168176823 + LTR40a LTR ERVL 1 192 -327 2942 87 0 2 chr1 114016841 114017243 -168176421 + L1PB1 LINE L1 5748 6148 -3 1400 234 49 75 chr1 114017243 114017587 -168176077 + LTR40a LTR ERVL 192 519 0 320 317 106 0 chr1 114017590 114017713 -168175951 - MIR SINE MIR -48 214 79 797 186 0 0 chr1 114017837 114018009 -168175655 + L1 LINE L1 4497 4668 -1478 243 0 0 0 chr1 114018009 114018036 -168175628 + (A)n Simple_repeat Simple_repeat 1 27 0 1756 163 10 7 chr1 114019699 114019994 -168173670 + AluJo SINE Alu 1 296 -16 223 313 284 0 chr1 114021107 114021241 -168172423 + MER5B DNA MER1_type 4 175 -3 30 0 0 0 chr1 114021712 114021742 -168171922 + AT_rich Low_complexity Low_complexity 1 30 0 469 211 0 0 chr1 114021757 114021833 -168171831 + MER5A DNA MER1_type 1 76 -113 569 126 21 11 chr1 114021939 114022034 -168171630 - MER4A LTR ERV1 -568 96 1 2161 166 21 37 chr1 114022035 114022500 -168171164 - MER4A-int LTR ERV1 -263 3928 3471 760 178 0 16 chr1 114022522 114022651 -168171013 - FLAM_C SINE Alu -16 127 1 3516 162 6 14 chr1 114022659 114023282 -168170382 - MER4A-int LTR ERV1 -716 3475 2858 3077 161 9 26 chr1 114023290 114023828 -168169836 + MER50 LTR ERV1 12 541 -193 1982 135 28 0 chr1 114023828 114024116 -168169548 - AluSx SINE Alu -14 298 3 3077 161 9 26 chr1 114024116 114024160 -168169504 + MER50 LTR ERV1 541 584 -150 1556 91 16 40 chr1 114024162 114024415 -168169249 - L1PB1 LINE L1 -5 6146 5900 5927 183 16 5 chr1 114024516 114025701 -168167963 - L1P LINE L1 -3080 3066 1869 1584 195 28 11 chr1 114027015 114027302 -168166362 - AluJb SINE Alu -20 292 1 227 232 0 36 chr1 114027751 114027807 -168165857 - MER5B DNA MER1_type -123 55 2 1246 113 32 0 chr1 114027817 114028002 -168165662 - L1PA10 LINE L1 -5 6163 5973 183 292 111 0 chr1 114028216 114028288 -168165376 - MIR SINE MIR -94 168 89 432 0 0 0 chr1 114028455 114028503 -168165161 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 364 0 0 chr1 114029340 114029395 -168164269 - L2 LINE L2 -10 3262 3208 230 284 49 0 chr1 114029413 114029494 -168164170 + L2 LINE L2 3167 3251 -62 374 351 60 54 chr1 114029514 114030055 -168163609 - L2 LINE L2 -56 3216 2687 2141 203 47 14 chr1 114030303 114030792 -168162872 + MLT1D LTR MaLR 1 505 0 288 0 0 0 chr1 114030962 114030994 -168162670 + (TG)n Simple_repeat Simple_repeat 2 33 0 467 57 43 14 chr1 114031428 114031498 -168162166 + MER4D-int LTR ERV1 6687 6758 0 4942 136 26 14 chr1 114031498 114032332 -168161332 + MER4D LTR ERV1 1 844 -28 183 80 0 0 chr1 114032370 114032395 -168161269 + (A)n Simple_repeat Simple_repeat 1 25 0 446 269 39 10 chr1 114032472 114032576 -168161088 - MIR SINE MIR -109 153 47 2068 122 0 29 chr1 114034370 114034682 -168158982 - AluSx SINE Alu -9 303 1 195 69 0 0 chr1 114035700 114035729 -168157935 + (A)n Simple_repeat Simple_repeat 1 29 0 3999 147 20 10 chr1 114035729 114036832 -168156832 + L1PB1 LINE L1 4663 5779 -372 309 109 0 0 chr1 114036832 114036878 -168156786 + (TA)n Simple_repeat Simple_repeat 2 47 0 3999 147 20 10 chr1 114036878 114036974 -168156690 + L1PB1 LINE L1 5779 5873 -278 269 75 38 19 chr1 114036972 114037025 -168156639 + L1PB1 LINE L1 6096 6149 -2 * 180 0 0 0 chr1 114038067 114038087 -168155577 + (TA)n Simple_repeat Simple_repeat 2 21 0 265 357 77 65 chr1 114039214 114039283 -168154381 + L2 LINE L2 2733 2800 -472 375 225 36 65 chr1 114039283 114039385 -168154279 - MER94 DNA DNA 0 134 35 1998 107 0 55 chr1 114039385 114039694 -168153970 + AluSx SINE Alu 1 292 -20 375 225 36 65 chr1 114039694 114039729 -168153935 - MER94 DNA DNA -99 35 1 265 357 77 65 chr1 114039729 114040189 -168153475 + L2 LINE L2 2800 3271 -1 21 36 0 0 chr1 114041429 114041457 -168152207 + AT_rich Low_complexity Low_complexity 1 28 0 510 254 84 38 chr1 114042974 114043261 -168150403 - L1ME LINE L1 -399 5722 5423 262 242 32 24 chr1 114043465 114043589 -168150075 + (CA)n Simple_repeat Simple_repeat 2 126 0 311 159 14 14 chr1 114044418 114044487 -168149177 - AluJ/FRAM SINE Alu -2 300 232 196 239 141 14 chr1 114044488 114044559 -168149105 + MIR SINE MIR 114 193 -69 685 191 41 0 chr1 114044595 114044742 -168148922 - MER6B DNA MER2_type 0 210 58 387 320 27 97 chr1 114044782 114045041 -168148623 - L2 LINE L2 -15 3257 3017 416 262 38 50 chr1 114045236 114045434 -168148230 - MIR SINE MIR -1 261 1 2274 87 13 3 chr1 114045646 114045946 -168147718 - AluSc SINE Alu -6 303 1 315 213 0 0 chr1 114046515 114046590 -168147074 + (TA)n Simple_repeat Simple_repeat 2 76 0 477 50 0 0 chr1 114046718 114046778 -168146886 + (TA)n Simple_repeat Simple_repeat 1 60 0 1168 88 7 166 chr1 114047088 114047371 -168146293 + MER4A LTR ERV1 185 422 -242 1612 72 63 13 chr1 114047380 114047617 -168146047 - L1PA8 LINE L1 -2 6170 5922 901 79 171 18 chr1 114047641 114047805 -168145859 + MER4C LTR ERV1 277 465 0 1457 181 4 4 chr1 114047806 114048071 -168145593 + MER21A-int LTR ERV1 3927 4191 0 1490 170 49 18 chr1 114048071 114048530 -168145134 + MER21A LTR ERV1 1 494 -369 212 191 0 24 chr1 114048531 114048550 -168145114 + GA-rich Low_complexity Low_complexity 2 20 -22 2254 119 0 0 chr1 114048550 114048860 -168144804 + AluSg SINE Alu 1 310 0 212 191 0 24 chr1 114048860 114048882 -168144782 + GA-rich Low_complexity Low_complexity 20 42 0 1124 78 17 11 chr1 114048882 114049061 -168144603 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2137 130 0 7 chr1 114050750 114051049 -168142615 - AluSx SINE Alu -15 297 1 290 325 64 62 chr1 114051478 114051929 -168141735 + L2 LINE L2 2627 3074 -198 4583 81 0 20 chr1 114052995 114053475 -168140189 - L1PA13 LINE L1 -5 6158 5693 1667 168 58 0 chr1 114053475 114053749 -168139915 - AluSx SINE Alu -22 290 1 4583 81 0 20 chr1 114053749 114053926 -168139738 - L1PA13 LINE L1 -470 5693 5514 646 255 27 21 chr1 114053989 114054177 -168139487 + MER58A DNA MER1_type 18 206 -18 1702 178 93 3 chr1 114054201 114054556 -168139108 - MLT1D LTR MaLR -117 388 2 268 194 75 0 chr1 114056551 114056618 -168137046 + MIR SINE MIR 78 149 -113 374 259 19 37 chr1 114058232 114058340 -168135324 + MIR3 SINE MIR 81 186 -22 334 252 47 24 chr1 114058499 114058626 -168135038 - L1ME4a LINE L1 -28 6093 5964 266 153 0 56 chr1 114059064 114059136 -168134528 + A-rich Low_complexity Low_complexity 3 70 0 241 260 156 26 chr1 114059259 114059451 -168134213 - L1ME4a LINE L1 -197 5924 5708 1120 163 57 0 chr1 114059706 114059915 -168133749 + L1PB1 LINE L1 1 221 -6642 14677 185 38 16 chr1 114060047 114064588 -168129076 + L1PB1 LINE L1 203 5138 -1729 219 36 0 0 chr1 114064588 114064616 -168129048 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 14677 185 38 16 chr1 114064616 114066354 -168127310 + L1PB1 LINE L1 5138 6836 -31 1816 171 84 26 chr1 114066354 114066881 -168126783 - MLT2A2 LTR ERVL 0 554 1 184 75 25 25 chr1 114066911 114066951 -168126713 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1341 228 67 28 chr1 114067067 114067427 -168126237 + MLT1A2 LTR MaLR 1 374 0 2797 211 10 4 chr1 114067428 114068046 -168125618 + MLT1A2-int LTR MaLR 2 667 -704 1207 199 81 7 chr1 114068046 114068328 -168125336 + MLT2B1 LTR ERVL 1 315 -239 209 397 0 0 chr1 114068609 114068687 -168124977 + L2 LINE L2 2244 2321 -993 2505 59 3 3 chr1 114068714 114069019 -168124645 - AluY SINE Alu -6 305 1 279 373 0 25 chr1 114069324 114069442 -168124222 + L3 LINE CR1 1462 1576 -1 741 238 222 14 chr1 114069678 114070039 -168123625 + MLT1J LTR MaLR 36 471 -40 528 264 176 23 chr1 114070276 114070492 -168123172 - MIR SINE MIR -6 256 8 5040 163 34 30 chr1 114070606 114071755 -168121909 - L1MA7 LINE L1 -4 6287 5133 2116 124 0 10 chr1 114072395 114072702 -168120962 - AluSx SINE Alu -1 311 8 3451 87 21 5 chr1 114073675 114074112 -168119552 - MLT2A1 LTR ERVL 0 444 1 23665 70 12 5 chr1 114074112 114077092 -168116572 - HERVL-A1 LTR ERVL 0 5654 2656 5637 95 19 1 chr1 114077092 114077862 -168115802 + THE1A-int LTR MaLR 796 1579 -1 2880 90 3 0 chr1 114077863 114078217 -168115447 + THE1A LTR MaLR 1 355 0 354 339 43 48 chr1 114078383 114078569 -168115095 - MIR SINE MIR -71 191 7 360 229 57 38 chr1 114078588 114078693 -168114971 - MER5A DNA MER1_type -22 167 61 237 284 55 39 chr1 114078589 114078716 -168114948 + MER5A DNA MER1_type 35 163 -26 * 711 136 0 0 chr1 114080499 114080602 -168113062 - FRAM SINE Alu -6 170 68 371 261 71 38 chr1 114080893 114081077 -168112587 + L1MC5 LINE L1 7725 7914 -47 3186 239 51 19 chr1 114083159 114084082 -168109582 - L1ME1 LINE L1 -72 6094 5122 2350 167 123 11 chr1 114084082 114084536 -168109128 - MLT1D LTR MaLR 0 505 1 3186 239 51 19 chr1 114084536 114084861 -168108803 - L1ME1 LINE L1 -1044 5122 4809 285 326 112 30 chr1 114084937 114085170 -168108494 + L2 LINE L2 2806 3057 -215 201 305 228 36 chr1 114085694 114085861 -168107803 - MIR SINE MIR -40 222 24 1757 156 45 0 chr1 114086866 114087154 -168106510 - AluJb SINE Alu -11 301 1 424 274 51 56 chr1 114087678 114087912 -168105752 - MLT1L LTR MaLR -14 601 369 2153 163 19 32 chr1 114088189 114088558 -168105106 - THE1B LTR MaLR 0 364 1 12443 96 7 1 chr1 114088558 114090129 -168103535 - THE1B-int LTR MaLR 0 1580 1 2445 104 46 52 chr1 114090129 114090495 -168103169 - THE1B LTR MaLR 0 364 1 1077 152 67 6 chr1 114090938 114091116 -168102548 - MER5A DNA MER1_type 0 189 1 362 330 21 47 chr1 114091152 114091343 -168102321 + MER5A DNA MER1_type 3 188 -1 * 381 261 25 83 chr1 114091188 114091345 -168102319 - MER5A DNA MER1_type -28 161 14 301 298 46 40 chr1 114091440 114091591 -168102073 + MIR SINE MIR 1 152 -110 931 83 0 0 chr1 114091641 114091761 -168101903 - THE1B LTR MaLR -49 315 196 253 342 114 9 chr1 114092851 114092965 -168100699 - MIR3 SINE MIR -73 135 10 388 265 191 4 chr1 114093430 114093660 -168100004 - HAL1 LINE L1 -8 2499 2227 1013 152 0 0 chr1 114093662 114093813 -168099851 - FRAM SINE Alu -8 168 18 268 239 8 92 chr1 114094330 114094460 -168099204 - L1MC5 LINE L1 -10 7951 7833 309 320 20 27 chr1 114094483 114094630 -168099034 + CT-rich Low_complexity Low_complexity 4 149 0 732 234 112 79 chr1 114096008 114096552 -168097112 + MLT1G1 LTR MaLR 1 530 -25 310 238 75 12 chr1 114096564 114096644 -168097020 + MER21B LTR ERV1 12 96 -767 3574 211 54 16 chr1 114096726 114097502 -168096162 + MER21B LTR ERV1 43 848 -15 209 286 71 41 chr1 114097574 114097672 -168095992 + L2 LINE L2 2212 2312 -1002 1621 174 10 27 chr1 114097891 114098190 -168095474 + AluJb SINE Alu 11 304 -8 1647 139 24 4 chr1 114098737 114099074 -168094590 - L1P5 LINE L1 -625 5526 5185 777 149 8 8 chr1 114099076 114099210 -168094454 + MER50 LTR ERV1 550 683 -51 6695 191 50 10 chr1 114099218 114100468 -168093196 - MER21A-int LTR ERV1 -1331 2860 1560 1598 164 68 41 chr1 114100468 114100833 -168092831 - THE1C LTR MaLR 0 375 1 7597 196 47 18 chr1 114100841 114101178 -168092486 - MER21A-int LTR ERV1 -2293 4465 4139 2223 115 0 3 chr1 114101178 114101473 -168092191 - AluSg SINE Alu -16 294 1 7597 196 47 18 chr1 114101473 114102557 -168091107 - MER21A-int LTR ERV1 -2619 4139 3087 5353 53 13 0 chr1 114102557 114103194 -168090470 + L1PA6 LINE L1 5506 6150 -4 7597 196 47 18 chr1 114103194 114103290 -168090374 - MER21A-int LTR ERV1 -3671 3087 1 2325 137 21 88 chr1 114103290 114103333 -168090331 - MER21A LTR ERV1 0 931 887 4059 135 31 70 chr1 114103333 114104052 -168089612 - LTR8 LTR ERV1 0 691 1 2325 137 21 88 chr1 114104052 114104474 -168089190 - MER21A LTR ERV1 -44 887 497 4192 142 46 7 chr1 114104474 114105169 -168088495 + MER50 LTR ERV1 1 722 -12 274 111 0 0 chr1 114105169 114105205 -168088459 + MER50-int LTR ERV1 7 42 -7163 445 167 0 0 chr1 114105207 114105285 -168088379 - MER21B LTR ERV1 -459 404 327 291 270 56 79 chr1 114106396 114106522 -168087142 + MIR SINE MIR 30 152 -56 2061 124 17 0 chr1 114106554 114106852 -168086812 - AluSx SINE Alu -9 303 1 222 333 159 16 chr1 114107501 114107627 -168086037 - L2 LINE L2 0 3272 3129 2067 117 21 0 chr1 114107654 114107937 -168085727 + AluJo SINE Alu 11 299 -13 609 190 153 0 chr1 114107937 114108100 -168085564 + Tigger4(Zombi) DNA MER2_type 2544 2731 0 407 304 114 39 chr1 114108248 114108882 -168084782 + L1ME3A LINE L1 1060 1740 -4656 846 159 53 13 chr1 114109018 114109169 -168084495 + FRAM SINE Alu 1 157 -19 670 295 72 63 chr1 114110180 114110764 -168082900 + L1ME3A LINE L1 3326 3903 -2312 1757 151 14 7 chr1 114110764 114111077 -168082587 + AluJb SINE Alu 1 315 0 670 295 72 63 chr1 114111077 114111126 -168082538 + L1ME3A LINE L1 3903 3950 -2265 1658 196 3 13 chr1 114111126 114111427 -168082237 - AluJb SINE Alu -14 298 1 670 295 72 63 chr1 114111427 114111573 -168082091 + L1ME3A LINE L1 3950 4093 -2122 2230 112 7 0 chr1 114111573 114111876 -168081788 - AluSx SINE Alu -7 305 1 670 295 72 63 chr1 114111876 114112030 -168081634 + L1ME3A LINE L1 4093 4244 -1971 190 0 67 0 chr1 114112030 114112060 -168081604 + (CAA)n Simple_repeat Simple_repeat 2 33 0 670 295 72 63 chr1 114112060 114112454 -168081210 + L1ME3A LINE L1 4244 4671 -1544 797 287 69 45 chr1 114112563 114113274 -168080390 + L1ME3A LINE L1 5459 6186 -53 450 265 0 0 chr1 114114253 114114351 -168079313 - L2 LINE L2 0 3272 3175 5223 124 17 26 chr1 114114459 114115571 -168078093 + L1PA16 LINE L1 4550 5656 -510 2352 110 7 0 chr1 114115571 114115881 -168077783 + AluSx SINE Alu 1 312 0 5223 124 17 26 chr1 114115881 114116388 -168077276 + L1PA16 LINE L1 5656 6166 0 1572 246 50 47 chr1 114117809 114118345 -168075319 - MLT1F1 LTR MaLR 0 567 5 316 322 65 45 chr1 114119106 114119305 -168074359 - L2 LINE L2 -16 3256 3054 1304 228 90 28 chr1 114119813 114120248 -168073416 - MLT1C LTR MaLR 0 467 6 21 57 0 0 chr1 114120320 114120355 -168073309 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 114120727 114120762 -168072902 + AT_rich Low_complexity Low_complexity 1 35 0 3227 211 35 6 chr1 114121122 114121952 -168071712 + L1 LINE L1 4140 4993 -1153 851 118 0 78 chr1 114121953 114122106 -168071558 + L1PA16 LINE L1 6017 6157 -9 2304 94 3 3 chr1 114122184 114122493 -168071171 + AluSc SINE Alu 1 309 0 2511 215 18 55 chr1 114122528 114123244 -168070420 - L1MB3 LINE L1 -32 6151 5462 1735 283 131 9 chr1 114124450 114125107 -168068557 + LTR41 LTR ERVL 1 737 -36 220 195 0 0 chr1 114125410 114125451 -168068213 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 447 68 0 0 chr1 114125763 114125822 -168067842 + (TG)n Simple_repeat Simple_repeat 1 59 0 2108 295 46 58 chr1 114126938 114128185 -168065479 + MER110-int LTR ERV1 3416 4647 0 1017 268 13 20 chr1 114128253 114128552 -168065112 - MLT1E LTR MaLR 0 593 297 239 231 0 0 chr1 114128636 114128688 -168064976 - MLT1E LTR MaLR -454 139 88 279 238 12 25 chr1 114128751 114128831 -168064833 + MER110 LTR ERV1 1 79 -412 1775 211 108 68 chr1 114129027 114129572 -168064092 - MLT1F1 LTR MaLR 0 567 1 266 188 0 0 chr1 114130156 114130204 -168063460 - MLT2B1 LTR ERVL 0 397 350 321 211 53 8 chr1 114130214 114130347 -168063317 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 1112 224 99 31 chr1 114130458 114130780 -168062884 - MLT2B1 LTR ERVL -176 344 1 1684 195 47 25 chr1 114131712 114132066 -168061598 - MER21B LTR ERV1 -2 861 500 1994 194 44 30 chr1 114132066 114132561 -168061103 - MER4D LTR ERV1 -2 901 400 1083 138 14 46 chr1 114132561 114132779 -168060885 - MER30 DNA MER1_type 0 230 20 1963 220 110 30 chr1 114132807 114133462 -168060202 + MER50 LTR ERV1 28 734 0 1232 176 6 118 chr1 114133485 114133832 -168059832 - MER4E LTR ERV1 -471 308 1 * 1454 186 19 12 chr1 114133832 114134289 -168059375 - MER21B LTR ERV1 -361 502 7 1751 179 179 26 chr1 114134291 114134821 -168058843 + LTR36 LTR ERV1 1 611 0 1939 143 48 59 chr1 114135140 114135581 -168058083 - LTR23 LTR ERV1 -1 436 1 1954 122 37 0 chr1 114135755 114136045 -168057619 - AluSx SINE Alu 0 302 3 222 37 0 0 chr1 114136653 114136680 -168056984 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 22 35 0 0 chr1 114138463 114138492 -168055172 + AT_rich Low_complexity Low_complexity 1 29 0 1206 185 102 38 chr1 114138975 114139288 -168054376 + LTR54B LTR ERV1 1 333 -165 495 215 48 59 chr1 114139263 114139301 -168054363 + MER57A LTR ERV1 216 253 -150 * 1635 162 44 34 chr1 114139301 114139597 -168054067 - AluSg SINE Alu -11 299 1 495 215 48 59 chr1 114139597 114139744 -168053920 + MER57A LTR ERV1 253 399 -4 494 180 62 31 chr1 114139884 114140012 -168053652 + MER57A-int LTR ERV1 116 247 -7290 471 158 53 11 chr1 114140074 114140169 -168053495 + MER57A-int LTR ERV1 149 247 -7290 1031 196 10 16 chr1 114140709 114140903 -168052761 - AluJ SINE Alu 0 312 120 9567 202 31 13 chr1 114140903 114142607 -168051057 - L1PA16 LINE L1 -2 6164 4492 188 35 35 0 chr1 114142607 114142636 -168051028 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 9567 202 31 13 chr1 114142636 114144265 -168049399 - L1PA16 LINE L1 -1674 4492 2763 2156 123 35 41 chr1 114144265 114144631 -168049033 + THE1B LTR MaLR 1 364 0 9567 202 31 13 chr1 114144631 114144912 -168048752 - L1PA16 LINE L1 -3403 2763 2489 24 0 0 0 chr1 114144917 114144941 -168048723 + AT_rich Low_complexity Low_complexity 1 24 0 565 167 0 75 chr1 114144941 114145061 -168048603 - AluJ SINE Alu -188 124 14 927 213 46 53 chr1 114145070 114145484 -168048180 + MER57A-int LTR ERV1 1192 1602 -3334 529 201 51 117 chr1 114145571 114145845 -168047819 - LTR48 LTR ERV1 -10 777 522 334 246 156 38 chr1 114145812 114146023 -168047641 - LTR48B LTR ERV1 -281 363 128 * 360 264 38 28 chr1 114145996 114146102 -168047562 - MER34 LTR ERV1 -430 112 6 306 0 0 0 chr1 114146119 114146153 -168047511 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1975 152 0 0 chr1 114146153 114146430 -168047234 - AluSx SINE Alu -33 279 3 587 201 39 43 chr1 114146567 114146801 -168046863 + MER57A-int LTR ERV1 1702 1934 -3002 367 278 83 0 chr1 114147068 114147201 -168046463 + MER57A-int LTR ERV1 2417 2560 -2376 535 120 0 0 chr1 114147226 114147301 -168046363 - AluJ/FRAM SINE Alu -21 291 217 5381 217 115 33 chr1 114147301 114147699 -168045965 + MER57A-int LTR ERV1 2565 2929 -2007 1551 183 60 28 chr1 114147699 114147984 -168045680 - AluJb SINE Alu -18 294 1 5381 217 115 33 chr1 114147984 114148184 -168045480 + MER57A-int LTR ERV1 2929 3111 -1825 1465 180 41 44 chr1 114148184 114148478 -168045186 - AluJb SINE Alu -19 293 1 5381 217 115 33 chr1 114148478 114148545 -168045119 + MER57A-int LTR ERV1 3111 3171 -1765 2145 102 7 26 chr1 114148545 114148848 -168044816 - AluSq SINE Alu -16 297 1 5381 217 115 33 chr1 114148848 114150026 -168043638 + MER57A-int LTR ERV1 3171 4561 -375 2112 137 3 0 chr1 114150359 114150658 -168043006 + AluSq SINE Alu 1 300 -13 289 192 0 0 chr1 114150986 114151038 -168042626 + LTR30 LTR ERV1 1 52 -670 1124 152 114 5 chr1 114151038 114151248 -168042416 + LTR12 LTR ERV1 53 285 -429 264 250 0 0 chr1 114151249 114151317 -168042347 + LTR30 LTR ERV1 553 620 -102 732 140 4 0 chr1 114151317 114151444 -168042220 + LTR12 LTR ERV1 45 584 -130 25390 120 8 15 chr1 114151460 114156303 -168037361 + HERV9 LTR ERV1 54 4944 -3455 2011 146 77 41 chr1 114156304 114157102 -168036562 + HERV17 LTR ERV1 708 1740 -5156 * 5384 118 5 0 chr1 114157101 114157870 -168035794 + HERV17 LTR ERV1 7627 8399 0 241 231 0 0 chr1 114157870 114157922 -168035742 + LTR30 LTR ERV1 1 52 -670 910 146 152 0 chr1 114157935 114158099 -168035565 + LTR12 LTR ERV1 89 277 -437 329 222 40 30 chr1 114158099 114158198 -168035466 + LTR30 LTR ERV1 544 643 -79 708 144 0 0 chr1 114158199 114158303 -168035361 + LTR12 LTR ERV1 481 584 -130 264 59 0 0 chr1 114159146 114159180 -168034484 + (TG)n Simple_repeat Simple_repeat 2 35 0 1860 256 74 21 chr1 114159286 114159801 -168033863 - MLT1F LTR MaLR 0 542 1 646 313 153 20 chr1 114160931 114161324 -168032340 + MLT1J LTR MaLR 25 469 -42 274 332 123 5 chr1 114162715 114162921 -168030743 - MIR SINE MIR -21 241 16 27 0 0 0 chr1 114164350 114164377 -168029287 + AT_rich Low_complexity Low_complexity 1 27 0 261 255 123 9 chr1 114164496 114164602 -168029062 + MIR SINE MIR 145 262 0 275 328 112 46 chr1 114164625 114164866 -168028798 + L2 LINE L2 2592 2848 -466 31 68 0 0 chr1 114164955 114165014 -168028650 + AT_rich Low_complexity Low_complexity 1 59 0 396 179 63 0 chr1 114165136 114165231 -168028433 - L1MB4 LINE L1 0 6180 6080 237 65 0 0 chr1 114165433 114165464 -168028200 + (T)n Simple_repeat Simple_repeat 1 31 0 8078 12 0 0 chr1 114165623 114167337 -168026327 - L1HS LINE L1 0 6155 4442 * 9006 26 0 0 chr1 114167335 114168419 -168025245 + L1P LINE L1 2790 3873 -2273 251 231 60 97 chr1 114168741 114168875 -168024789 + LTR37A LTR ERV1 95 223 -203 617 75 0 11 chr1 114168954 114169047 -168024617 + (TAGA)n Simple_repeat Simple_repeat 4 95 0 1102 191 44 28 chr1 114169062 114169313 -168024351 - AluJo SINE Alu -15 297 43 4293 156 25 10 chr1 114169342 114170149 -168023515 - L1MA4 LINE L1 -11 6289 5471 3391 171 11 9 chr1 114170149 114170817 -168022847 - L1MA4 LINE L1 -1058 5088 4420 421 131 0 0 chr1 114170917 114170978 -168022686 - LTR12 LTR ERV1 -162 552 492 286 235 29 59 chr1 114170978 114171080 -168022584 - LTR30 LTR ERV1 -92 620 379 3229 248 32 17 chr1 114171093 114171882 -168021782 - L1P LINE L1 -2568 3578 2767 2143 123 35 41 chr1 114171882 114172248 -168021416 + THE1B LTR MaLR 1 364 0 3229 248 32 17 chr1 114172248 114172514 -168021150 - L1P LINE L1 -3379 2767 2507 29 47 0 0 chr1 114172515 114172558 -168021106 + AT_rich Low_complexity Low_complexity 1 43 0 611 150 0 75 chr1 114172558 114172678 -168020986 - FLAM_C SINE Alu -19 124 14 1013 213 46 53 chr1 114172687 114173101 -168020563 + Harlequin LTR ERV1 1192 1602 -3334 604 201 51 117 chr1 114173188 114173462 -168020202 - LTR48 LTR ERV1 -10 777 522 382 251 156 38 chr1 114173429 114173640 -168020024 - LTR48B LTR ERV1 -281 363 128 * 391 264 38 28 chr1 114173613 114173719 -168019945 - MER34 LTR ERV1 -430 112 6 306 0 0 0 chr1 114173736 114173770 -168019894 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1960 152 0 0 chr1 114173770 114174047 -168019617 - AluSx SINE Alu -33 279 3 636 201 39 43 chr1 114174184 114174418 -168019246 + Harlequin LTR ERV1 1702 1934 -3002 284 241 318 8 chr1 114174465 114174817 -168018847 + Harlequin LTR ERV1 2100 2560 -2376 522 122 0 0 chr1 114174842 114174916 -168018748 - AluJ/FRAM SINE Alu -22 290 217 5947 215 115 33 chr1 114174916 114175314 -168018350 + Harlequin LTR ERV1 2565 2929 -2007 1510 182 56 31 chr1 114175314 114175600 -168018064 - AluJb SINE Alu -19 293 1 5947 215 115 33 chr1 114175600 114175800 -168017864 + Harlequin LTR ERV1 2929 3111 -1825 1419 183 41 44 chr1 114175800 114176095 -168017569 - AluJb SINE Alu -18 294 1 5947 215 115 33 chr1 114176095 114176162 -168017502 + Harlequin LTR ERV1 3111 3171 -1765 2114 106 7 23 chr1 114176162 114176464 -168017200 - AluSq SINE Alu -16 297 1 5947 215 115 33 chr1 114176464 114177642 -168016022 + Harlequin LTR ERV1 3171 4561 -375 2070 138 3 0 chr1 114177975 114178273 -168015391 + AluSq SINE Alu 1 299 -14 306 192 0 0 chr1 114178601 114178653 -168015011 + LTR30 LTR ERV1 1 52 -670 1227 148 114 5 chr1 114178653 114178863 -168014801 + LTR12 LTR ERV1 53 285 -429 286 235 29 59 chr1 114178864 114178966 -168014698 + LTR30 LTR ERV1 379 620 -92 691 126 2 18 chr1 114178966 114179083 -168014581 + LTR12 LTR ERV1 313 584 -130 * 26667 122 8 16 chr1 114179075 114183953 -168009711 + HERV9 LTR ERV1 54 4980 -3419 2027 191 149 52 chr1 114183947 114184718 -168008946 + Harlequin LTR ERV1 895 1740 -5156 * 5384 118 5 0 chr1 114184717 114185486 -168008178 + Harlequin LTR ERV1 7627 8399 0 241 231 0 0 chr1 114185486 114185538 -168008126 + LTR30 LTR ERV1 1 52 -670 910 146 152 0 chr1 114185551 114185715 -168007949 + LTR12 LTR ERV1 89 277 -437 329 222 40 30 chr1 114185715 114185814 -168007850 + LTR30 LTR ERV1 544 643 -79 708 144 0 0 chr1 114185815 114185919 -168007745 + LTR12 LTR ERV1 481 584 -130 246 62 0 0 chr1 114186762 114186794 -168006870 + (TG)n Simple_repeat Simple_repeat 2 33 0 1852 256 72 21 chr1 114186900 114187416 -168006248 - MLT1F LTR MaLR 0 542 1 637 315 150 20 chr1 114188546 114188940 -168004724 + MLT1J LTR MaLR 25 469 -42 274 332 123 5 chr1 114190331 114190537 -168003127 - MIR SINE MIR -21 241 16 27 0 0 0 chr1 114191966 114191993 -168001671 + AT_rich Low_complexity Low_complexity 1 27 0 261 255 123 9 chr1 114192112 114192218 -168001446 + MIR SINE MIR 145 262 0 275 328 112 46 chr1 114192241 114192482 -168001182 + L2 LINE L2 2592 2848 -466 31 68 0 0 chr1 114192571 114192630 -168001034 + AT_rich Low_complexity Low_complexity 1 59 0 396 179 63 0 chr1 114192752 114192847 -168000817 - L1MB4 LINE L1 0 6180 6080 251 231 60 97 chr1 114193371 114193505 -168000159 + LTR37A LTR ERV1 95 223 -203 581 79 0 11 chr1 114193584 114193673 -167999991 + (TAGA)n Simple_repeat Simple_repeat 4 91 0 1102 191 44 28 chr1 114193688 114193939 -167999725 - AluJo SINE Alu -15 297 43 4290 154 25 10 chr1 114193968 114194775 -167998889 - L1MA4 LINE L1 -11 6471 5653 13857 198 21 18 chr1 114194775 114195768 -167997896 - L1MA4 LINE L1 -1058 5270 4282 1595 163 7 55 chr1 114195768 114196075 -167997589 + AluJo SINE Alu 1 292 -20 13857 198 21 18 chr1 114196075 114196316 -167997348 - L1MA4 LINE L1 -2046 4282 4043 2157 126 126 11 chr1 114196316 114196698 -167996966 - MSTA LTR MaLR 0 428 3 13857 198 21 18 chr1 114196698 114200721 -167992943 - L1MA4 LINE L1 -2285 4043 3 369 192 72 16 chr1 114200722 114200847 -167992817 + LTR37B LTR ERV1 332 463 -5 333 0 0 0 chr1 114201254 114201291 -167992373 + (TG)n Simple_repeat Simple_repeat 1 37 0 184 313 38 25 chr1 114201532 114201612 -167992052 + L2 LINE L2 2865 2945 -369 1225 127 14 72 chr1 114201896 114202117 -167991547 - AluJb SINE Alu -19 293 86 1015 240 49 57 chr1 114202173 114202686 -167990978 + MER39 LTR ERV1 5 648 0 2415 80 0 10 chr1 114202886 114203198 -167990466 + AluY SINE Alu 1 309 -2 1156 222 118 37 chr1 114204390 114204824 -167988840 - MLT1C LTR MaLR 0 467 6 741 223 111 23 chr1 114205546 114205804 -167987860 + MLT1H LTR MaLR 14 264 -302 645 271 128 18 chr1 114206390 114206663 -167987001 + MLT1H LTR MaLR 1 303 -246 287 201 109 98 chr1 114207577 114207751 -167985913 - L1ME LINE L1 -392 5729 5554 502 236 24 51 chr1 114208276 114208447 -167985217 + MIR SINE MIR 37 205 -57 311 160 0 0 chr1 114208680 114208730 -167984934 - Ricksha DNA DNA -2341 905 856 285 75 0 0 chr1 114208731 114208771 -167984893 + (CA)n Simple_repeat Simple_repeat 2 41 0 2088 245 26 11 chr1 114208794 114209247 -167984417 - MLT2B3 LTR ERVL -20 534 75 421 169 0 0 chr1 114209344 114209415 -167984249 - MLT2B3 LTR ERVL -483 71 1 302 298 38 30 chr1 114210629 114210760 -167982904 - L3 LINE CR1 -80 1497 1366 1979 134 7 17 chr1 114210825 114211123 -167982541 - AluSx SINE Alu -17 295 1 2603 164 31 7 chr1 114211205 114211651 -167982013 - MSTB2 LTR MaLR 0 457 1 387 321 83 88 chr1 114212365 114212751 -167980913 - L3 LINE CR1 -245 1332 949 213 380 31 2 chr1 114212947 114213144 -167980520 - L3 LINE CR1 -861 716 471 21 0 0 0 chr1 114213190 114213211 -167980453 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 114213746 114213775 -167979889 + AT_rich Low_complexity Low_complexity 1 29 0 313 303 69 14 chr1 114213871 114214016 -167979648 - LTR67 LTR ERVL 0 557 405 1027 76 0 0 chr1 114214777 114214908 -167978756 + AluSg/x SINE Alu 181 311 -1 187 294 0 0 chr1 114215550 114215601 -167978063 - MER5B DNA MER1_type 0 178 128 480 273 25 8 chr1 114215635 114215756 -167977908 + MER5B DNA MER1_type 49 171 -7 433 253 34 0 chr1 114216080 114216226 -167977438 - L1ME4a LINE L1 -203 5918 5768 1483 193 31 91 chr1 114216255 114216443 -167977221 + MSTB1 LTR MaLR 5 203 -229 978 138 0 6 chr1 114216443 114216603 -167977061 + L1PB1 LINE L1 5991 6149 -2 1483 193 31 91 chr1 114216603 114216865 -167976799 + MSTB1 LTR MaLR 203 428 -4 2014 164 17 98 chr1 114217101 114217582 -167976082 - L1ME4a LINE L1 -368 5798 5357 1455 254 8 17 chr1 114217585 114217936 -167975728 - MLT1A1 LTR MaLR -6 359 12 708 230 59 18 chr1 114217946 114218168 -167975496 - L1ME4a LINE L1 -774 5372 5142 1054 328 97 26 chr1 114218917 114219454 -167974210 + MLT1K LTR MaLR 3 577 -11 333 368 137 20 chr1 114219791 114220090 -167973574 + L2 LINE L2 2918 3251 -21 556 157 19 3 chr1 114220275 114220402 -167973262 - MLT1B LTR MaLR -2 388 246 228 330 64 11 chr1 114221879 114221973 -167971691 - MIR SINE MIR -140 122 24 233 232 0 18 chr1 114222350 114222406 -167971258 - MIR SINE MIR -16 246 192 730 234 204 50 chr1 114222866 114223529 -167970135 - LTR50 LTR ERVL 0 795 51 309 294 196 43 chr1 114223687 114223963 -167969701 + MLT1K LTR MaLR 158 475 -113 51 58 0 0 chr1 114224183 114224269 -167969395 + AT_rich Low_complexity Low_complexity 1 86 0 2013 115 3 14 chr1 114224281 114224568 -167969096 + AluSp SINE Alu 3 286 -27 180 0 0 0 chr1 114224568 114224588 -167969076 + (TA)n Simple_repeat Simple_repeat 2 21 0 757 209 78 47 chr1 114224596 114224892 -167968772 + L1MC5 LINE L1 7609 7913 -48 2445 218 23 17 chr1 114225282 114225806 -167967858 + MER77 LTR ERV1 54 580 -25 249 266 184 0 chr1 114226049 114226158 -167967506 + MER21B LTR ERV1 734 862 -1 289 273 37 93 chr1 114226307 114226523 -167967141 + ERVL LTR ERVL 1711 1914 -3850 1211 358 87 26 chr1 114226583 114227631 -167966033 + ERVL LTR ERVL 2356 3472 -2013 455 240 16 47 chr1 114227631 114227760 -167965904 + MER94 DNA DNA 1 125 -9 270 265 85 6 chr1 114228107 114228292 -167965372 + ERVL LTR ERVL 4056 4242 -1412 404 288 164 43 chr1 114228736 114229059 -167964605 + LTR67 LTR ERVL 92 453 -104 27 0 0 0 chr1 114229884 114229911 -167963753 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr1 114231078 114231104 -167962560 + AT_rich Low_complexity Low_complexity 1 26 0 2588 161 37 2 chr1 114231198 114231659 -167962005 - Tigger1 DNA MER2_type -26 2392 1916 598 61 0 92 chr1 114231659 114231757 -167961907 + L1PA7 LINE L1 6057 6145 -9 520 187 6 22 chr1 114231767 114231949 -167961715 + (TA)n Simple_repeat Simple_repeat 2 180 0 444 194 42 0 chr1 114232005 114232149 -167961515 + (TA)n Simple_repeat Simple_repeat 1 150 0 308 253 11 32 chr1 114232149 114232244 -167961420 + L1MC4 LINE L1 6612 6704 -1338 28 60 0 15 chr1 114232244 114232281 -167961383 + AT_rich Low_complexity Low_complexity 1 38 -28 881 10 0 118 chr1 114232281 114232485 -167961179 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 28 60 0 15 chr1 114232485 114232514 -167961150 + AT_rich Low_complexity Low_complexity 38 66 0 246 96 82 0 chr1 114232514 114232587 -167961077 + (TA)n Simple_repeat Simple_repeat 2 80 0 228 222 22 44 chr1 114232726 114232816 -167960848 + L1MC4 LINE L1 6614 6701 -1341 254 146 49 0 chr1 114232816 114232898 -167960766 + (TA)n Simple_repeat Simple_repeat 1 86 0 561 147 53 0 chr1 114232912 114233082 -167960582 + (TA)n Simple_repeat Simple_repeat 2 180 0 750 118 53 0 chr1 114233101 114233424 -167960240 + (TA)n Simple_repeat Simple_repeat 1 340 0 651 144 53 0 chr1 114233441 114233782 -167959882 + (TA)n Simple_repeat Simple_repeat 1 358 0 11614 134 21 15 chr1 114233796 114235079 -167958585 - Tigger1 DNA MER2_type -511 1907 609 6699 66 38 0 chr1 114235079 114235943 -167957721 + MER11D LTR ERVK 1 897 0 11614 134 21 15 chr1 114235943 114236556 -167957108 - Tigger1 DNA MER2_type -1809 609 1 1375 189 73 0 chr1 114236861 114237026 -167956638 - AluJb SINE Alu -16 296 102 483 63 0 0 chr1 114237026 114237089 -167956575 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1375 189 73 0 chr1 114237089 114237198 -167956466 - AluJb SINE Alu -210 102 2 258 346 89 43 chr1 114237234 114237562 -167956102 + L2 LINE L2 2712 3102 -170 395 270 137 65 chr1 114239002 114239324 -167954340 + L2 LINE L2 1487 1831 -1483 1071 296 147 13 chr1 114239382 114239452 -167954212 + MLT1H LTR MaLR 41 100 -449 1944 180 86 5 chr1 114239452 114239846 -167953818 + MSTB LTR MaLR 1 426 0 1071 296 147 13 chr1 114239846 114240224 -167953440 + MLT1H LTR MaLR 100 549 0 1674 329 70 39 chr1 114240229 114240522 -167953142 + L2 LINE L2 1844 2127 -1186 2165 111 3 0 chr1 114240522 114240819 -167952845 - AluSq SINE Alu -15 298 1 1674 329 70 39 chr1 114240819 114241940 -167951724 + L2 LINE L2 2127 3312 -1 417 287 120 48 chr1 114243025 114243192 -167950472 + MIR SINE MIR 84 262 0 268 200 92 0 chr1 114244904 114244969 -167948695 + L1ME3A LINE L1 4115 4185 -1961 1729 242 70 14 chr1 114244981 114245423 -167948241 - MLT1D LTR MaLR -36 469 3 892 294 130 12 chr1 114245638 114246573 -167947091 + L1ME3A LINE L1 4909 5955 -215 267 163 31 31 chr1 114246782 114246880 -167946784 + (CATA)n Simple_repeat Simple_repeat 3 100 0 579 267 34 9 chr1 114247863 114248029 -167945635 - MIR3 SINE MIR -64 144 9 31 0 0 0 chr1 114248214 114248245 -167945419 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 114248836 114248858 -167944806 + AT_rich Low_complexity Low_complexity 1 22 0 728 319 155 11 chr1 114250292 114250723 -167942941 + L2 LINE L2 2464 2831 -482 3088 145 24 43 chr1 114250723 114250825 -167942839 + LTR24B LTR ERV1 1 103 -473 2348 71 7 0 chr1 114250825 114251122 -167942542 - AluSp SINE Alu -14 299 1 3088 145 24 43 chr1 114251122 114251605 -167942059 + LTR24B LTR ERV1 103 575 -1 728 319 155 11 chr1 114251605 114251904 -167941760 + L2 LINE L2 2831 3310 -3 3233 123 75 14 chr1 114251978 114252538 -167941126 - LTR49 LTR ERV1 -1 594 1 2511 61 0 3 chr1 114254958 114255270 -167938394 - AluY SINE Alu 0 311 1 219 277 138 0 chr1 114255837 114255902 -167937762 + MIR SINE MIR 52 125 -83 252 86 0 0 chr1 114256114 114256149 -167937515 + (CA)n Simple_repeat Simple_repeat 2 36 0 1688 175 3 7 chr1 114258799 114259085 -167934579 + AluJo SINE Alu 3 287 -25 722 290 157 29 chr1 114259120 114259592 -167934072 - L2 LINE L2 -45 3268 2732 1383 289 50 20 chr1 114259595 114260100 -167933564 - L1ME3A LINE L1 -135 6035 5516 1231 236 181 74 chr1 114260100 114260587 -167933077 + MLT1E LTR MaLR 42 580 -13 855 281 119 40 chr1 114260592 114261086 -167932578 - L1ME3A LINE L1 -771 5375 4843 1414 308 57 20 chr1 114261086 114261576 -167932088 + MLT2E LTR ERVL 1 508 -120 710 228 40 71 chr1 114261646 114261728 -167931936 - L1ME3A LINE L1 -1301 4845 4762 2209 106 10 0 chr1 114261728 114262021 -167931643 - AluSx SINE Alu -14 298 3 710 228 40 71 chr1 114262021 114262262 -167931402 - L1ME3A LINE L1 -1384 4762 4532 230 336 37 9 chr1 114262282 114262389 -167931275 + L1 LINE L1 3566 3675 -2471 350 267 0 23 chr1 114263537 114263623 -167930041 + L2 LINE L2 2978 3061 -211 628 258 119 0 chr1 114263841 114264000 -167929664 - MER45A DNA AcHobo 0 178 1 9413 150 23 25 chr1 114264183 114264659 -167929005 - Tigger4(Zombi) DNA MER2_type 0 2731 2255 1740 185 0 13 chr1 114264659 114264967 -167928697 + AluJb SINE Alu 3 306 -6 9413 150 23 25 chr1 114264967 114266488 -167927176 - Tigger4(Zombi) DNA MER2_type -476 2255 2 576 352 60 36 chr1 114266687 114266968 -167926696 - L2 LINE L2 0 3272 2985 2239 179 64 27 chr1 114267338 114267823 -167925841 - MLT1D LTR MaLR 0 505 3 391 327 27 40 chr1 114267987 114268108 -167925556 + MIR SINE MIR 31 149 -113 2525 201 27 16 chr1 114268108 114268621 -167925043 + LTR53 LTR ERVL 1 519 0 391 327 27 40 chr1 114268621 114268722 -167924942 + MIR SINE MIR 149 250 -12 2481 119 18 5 chr1 114268730 114269118 -167924546 + MER39B LTR ERV1 1 393 -260 215 368 35 53 chr1 114270155 114270440 -167923224 + L2 LINE L2 2465 2744 -570 2560 186 5 0 chr1 114270458 114270882 -167922782 - MSTB LTR MaLR 0 426 1 239 279 15 15 chr1 114271028 114271096 -167922568 + L2 LINE L2 2945 3012 -260 198 342 0 94 chr1 114271244 114271361 -167922303 + L2 LINE L2 3163 3268 -4 413 309 113 6 chr1 114271367 114271535 -167922129 - MIR SINE MIR -29 233 48 634 209 29 12 chr1 114272880 114273052 -167920612 + MER104 DNA MER2_type 2 176 -4 503 263 43 70 chr1 114273494 114273680 -167919984 - MER5A DNA MER1_type -8 181 1 21 71 0 0 chr1 114273725 114273767 -167919897 + AT_rich Low_complexity Low_complexity 1 42 0 14540 132 20 15 chr1 114273907 114276313 -167917351 - Tigger1 DNA MER2_type 0 2418 1 2517 83 128 2 chr1 114276839 114277237 -167916427 - LTR7 LTR ERV1 -2 448 1 13982 84 10 3 chr1 114277237 114279168 -167914496 - HERVH LTR ERV1 0 7713 5769 1321 78 6 0 chr1 114279164 114279343 -167914321 - HERVH LTR ERV1 -3046 4667 4488 * 3251 133 0 6 chr1 114279347 114279850 -167913814 - HERVH LTR ERV1 -3722 3991 3492 891 120 63 0 chr1 114279840 114279982 -167913682 - HERVH LTR ERV1 -4423 3290 3140 * 14466 108 8 31 chr1 114279961 114282702 -167910962 - HERVH LTR ERV1 -4718 2995 1 2059 79 31 5 chr1 114282705 114283053 -167910611 - LTR7 LTR ERV1 -2 448 3 492 264 62 8 chr1 114285467 114285596 -167908068 - MIR3 SINE MIR -2 206 71 347 316 18 0 chr1 114285874 114285988 -167907676 - L2 LINE L2 -1 3312 3197 34 72 0 0 chr1 114287218 114287287 -167906377 + AT_rich Low_complexity Low_complexity 1 69 0 738 200 0 15 chr1 114287475 114287610 -167906054 + FLAM_C SINE Alu 1 133 0 269 303 7 52 chr1 114287721 114287817 -167905847 + L1 LINE L1 960 1048 -6050 1503 158 89 47 chr1 114287817 114288177 -167905487 + THE1C LTR MaLR 1 375 0 269 303 7 52 chr1 114288177 114288235 -167905429 + L1 LINE L1 1048 1107 -5991 1987 262 46 43 chr1 114288673 114289696 -167903968 + L1 LINE L1 1722 2759 -4409 * 2360 200 151 0 chr1 114289689 114290284 -167903380 + L1 LINE L1 5456 6140 -1027 1128 140 64 34 chr1 114290270 114290534 -167903130 + L1MA9 LINE L1 5953 6224 -88 * 3416 132 9 9 chr1 114290534 114291078 -167902586 - L1PA15 LINE L1 -8 6157 5614 948 108 7 0 chr1 114291078 114291217 -167902447 + L1PA15 LINE L1 5468 5607 -558 350 211 0 0 chr1 114291217 114291305 -167902359 + L1MA9 LINE L1 6221 6310 -2 317 314 87 13 chr1 114291348 114291577 -167902087 - L1ME LINE L1 -325 6239 5994 3053 238 47 41 chr1 114291692 114293060 -167900604 + L1MD1 LINE L1 4100 5479 -743 3088 200 34 5 chr1 114293065 114293734 -167899930 + L1MD1 LINE L1 5546 6234 -8 567 259 68 0 chr1 114294114 114294334 -167899330 - L1ME LINE L1 -1832 4708 4474 406 296 160 10 chr1 114294502 114294708 -167898956 - L1ME LINE L1 -3248 3292 3056 1913 286 77 82 chr1 114294708 114296349 -167897315 - HAL1 LINE L1 -639 1868 237 324 282 58 41 chr1 114296378 114296740 -167896924 - L1M4 LINE L1 -979 5167 4800 341 256 128 30 chr1 114296754 114296887 -167896777 - L1M4 LINE L1 -1538 4608 4463 27 29 0 0 chr1 114296908 114296942 -167896722 + AT_rich Low_complexity Low_complexity 1 34 0 421 234 21 0 chr1 114297052 114297146 -167896518 + L2 LINE L2 3218 3313 0 350 305 91 52 chr1 114297307 114297517 -167896147 - L1ME LINE L1 -3964 2576 2359 1929 131 6 51 chr1 114298502 114298852 -167894812 - MER1B DNA MER1_type 0 337 4 28 29 0 0 chr1 114299060 114299095 -167894569 + AT_rich Low_complexity Low_complexity 1 35 0 1917 262 87 45 chr1 114299227 114300211 -167893453 - L2 LINE L2 -142 3171 2148 1124 241 160 32 chr1 114300231 114300460 -167893204 - MER69B DNA AcHobo -1323 1203 1005 2195 109 0 0 chr1 114300460 114300753 -167892911 - AluSc SINE Alu -16 293 1 1124 241 160 32 chr1 114300753 114301026 -167892638 - MER69B DNA AcHobo -1521 1005 768 2154 121 3 0 chr1 114301026 114301323 -167892341 - AluSx SINE Alu -14 298 1 1124 241 160 32 chr1 114301323 114301830 -167891834 - MER69B DNA AcHobo -1758 768 1 2249 281 140 21 chr1 114301840 114302750 -167890914 - L2 LINE L2 -1170 2144 1127 1718 205 59 0 chr1 114302844 114303215 -167890449 + MSTD LTR MaLR 1 393 -3 342 0 0 0 chr1 114304422 114304460 -167889204 + (TG)n Simple_repeat Simple_repeat 2 39 0 1754 157 144 26 chr1 114304620 114304720 -167888944 + MSTA LTR MaLR 1 88 -340 3291 95 16 0 chr1 114304720 114305163 -167888501 + MLT2A2 LTR ERVL 1 450 -3 1754 157 144 26 chr1 114305163 114305445 -167888219 + MSTA LTR MaLR 88 428 0 8092 169 93 9 chr1 114305445 114306963 -167886701 + MSTA-int LTR MaLR 1 1645 -6 1782 194 95 0 chr1 114306968 114307359 -167886305 + MSTA LTR MaLR 1 428 0 5672 32 0 0 chr1 114307579 114308259 -167885405 - L1PA3 LINE L1 -1284 4862 4183 7534 30 0 1 chr1 114308258 114309556 -167884108 + L1PA3 LINE L1 4856 6152 -3 26 64 0 0 chr1 114309589 114309636 -167884028 + AT_rich Low_complexity Low_complexity 1 47 0 628 278 124 0 chr1 114310280 114310489 -167883175 + MIR SINE MIR 13 247 -15 1391 203 69 51 chr1 114310556 114310945 -167882719 - MSTD LTR MaLR 0 396 1 631 263 43 53 chr1 114312914 114313123 -167880541 - MIR SINE MIR 0 262 56 2292 96 3 10 chr1 114314207 114314521 -167879143 + AluSq SINE Alu 1 312 -1 295 278 80 106 chr1 114315207 114315595 -167878069 + L2 LINE L2 2152 2529 -785 207 0 0 0 chr1 114315744 114315767 -167877897 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 990 152 0 6 chr1 114315773 114315931 -167877733 - AluSg/x SINE Alu -36 274 118 6549 24 0 0 chr1 114315931 114316687 -167876977 - L1PA3 LINE L1 -14 6141 5386 771 171 20 20 chr1 114316687 114316833 -167876831 - AluSq/x SINE Alu -166 146 1 181 315 117 0 chr1 114316965 114317076 -167876588 + L2 LINE L2 2935 3058 -214 493 339 46 9 chr1 114317197 114317415 -167876249 - MIR SINE MIR -12 250 25 200 222 51 28 chr1 114317510 114317686 -167875978 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 263 225 22 60 chr1 114317563 114317745 -167875919 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 204 158 0 0 chr1 114318274 114318312 -167875352 + (TG)n Simple_repeat Simple_repeat 1 38 0 1931 159 0 3 chr1 114318594 114318902 -167874762 - AluSg SINE Alu -3 307 1 1389 193 10 100 chr1 114318993 114319392 -167874272 + MLT1A1 LTR MaLR 3 365 0 1636 226 24 39 chr1 114319883 114320374 -167873290 - MER31A LTR ERV1 -1 484 1 191 267 22 56 chr1 114320472 114320562 -167873102 + L3b LINE CR1 1293 1379 -204 2022 183 37 32 chr1 114323452 114324002 -167869662 + MLT2A2 LTR ERVL 1 554 0 180 0 0 0 chr1 114324143 114324163 -167869501 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 210 37 0 0 chr1 114324222 114324249 -167869415 + (CAG)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr1 114324816 114324840 -167868824 + AT_rich Low_complexity Low_complexity 1 24 0 183 227 76 30 chr1 114325462 114325528 -167868136 + L2 LINE L2 1748 1816 -1498 1093 201 163 7 chr1 114326116 114326410 -167867254 + MER2 DNA MER2_type 6 345 0 342 281 209 25 chr1 114326557 114326753 -167866911 + MIR SINE MIR 30 261 -1 246 366 105 12 chr1 114326998 114327170 -167866494 - MIR SINE MIR -42 220 33 225 196 0 0 chr1 114327188 114327239 -167866425 + CT-rich Low_complexity Low_complexity 2 52 0 9506 223 33 38 chr1 114327261 114333863 -167859801 - L1MA4 LINE L1 -3 6479 14 1586 224 61 60 chr1 114334319 114334480 -167859184 - MER34B LTR ERV1 -1 564 405 712 254 103 63 chr1 114334480 114334831 -167858833 + MLT1A1 LTR MaLR 1 365 0 1586 224 61 60 chr1 114334831 114335241 -167858423 - MER34B LTR ERV1 -160 405 11 1045 237 87 49 chr1 114335251 114335831 -167857833 - MER67B LTR ERV1 -68 563 3 410 169 24 12 chr1 114335831 114335911 -167857753 - MER67A LTR ERV1 -462 81 1 3145 172 44 61 chr1 114336228 114337069 -167856595 - LTR1 LTR ERV1 0 785 1 21 0 0 0 chr1 114337381 114337402 -167856262 + AT_rich Low_complexity Low_complexity 1 21 0 1849 101 16 92 chr1 114337463 114337960 -167855704 - AluSp SINE Alu 0 473 1 28 29 0 0 chr1 114338296 114338331 -167855333 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 114338792 114338813 -167854851 + AT_rich Low_complexity Low_complexity 1 21 0 4706 179 40 25 chr1 114338933 114340630 -167853034 - L1MA9 LINE L1 -271 7001 5276 1991 250 70 18 chr1 114340625 114341828 -167851836 - L1MA9 LINE L1 -4703 2334 5 * 534 352 16 11 chr1 114342356 114342538 -167851126 - MIR3 SINE MIR -7 201 19 181 354 62 0 chr1 114342658 114342723 -167850941 - L2 LINE L2 -7 3265 3197 2300 106 0 6 chr1 114343034 114343346 -167850318 + AluY SINE Alu 1 310 -1 332 238 98 57 chr1 114343555 114343677 -167849987 - LTR16A1 LTR ERVL -185 272 146 1023 239 133 17 chr1 114343845 114344146 -167849518 - MER58B DNA MER1_type 0 341 6 440 268 16 0 chr1 114344156 114344279 -167849385 - MIR SINE MIR -40 222 98 3108 121 65 23 chr1 114344325 114344848 -167848816 + LTR10A LTR ERV1 3 547 -62 365 256 73 0 chr1 114344872 114344954 -167848710 - MIR SINE MIR -174 88 1 1519 180 91 51 chr1 114345390 114345840 -167847824 + MER110A LTR ERV1 1 468 0 29 0 0 0 chr1 114347927 114347956 -167845708 + AT_rich Low_complexity Low_complexity 1 29 0 7555 26 0 0 chr1 114347956 114349103 -167844561 - L1PA3 LINE L1 -3 6152 5002 3481 121 65 0 chr1 114349908 114350428 -167843236 + MER41C LTR ERV1 1 554 0 626 331 57 14 chr1 114350648 114350944 -167842720 - L2 LINE L2 -20 3293 2985 * 635 288 21 56 chr1 114350931 114351164 -167842500 - MIR SINE MIR -33 229 5 25 0 0 0 chr1 114351429 114351454 -167842210 + AT_rich Low_complexity Low_complexity 1 25 0 1370 152 53 104 chr1 114351794 114352188 -167841476 + MLT1A2 LTR MaLR 1 374 0 1943 121 0 46 chr1 114352222 114352527 -167841137 + AluSc SINE Alu 3 293 -16 4435 166 26 7 chr1 114352536 114353369 -167840295 - L1MB1 LINE L1 -42 6126 5278 2111 119 47 39 chr1 114353376 114353736 -167839928 + THE1B LTR MaLR 2 364 0 301 286 34 50 chr1 114353740 114353859 -167839805 - L1ME3A LINE L1 -233 6006 5890 1986 110 82 0 chr1 114353891 114354172 -167839492 + AluSg SINE Alu 1 304 -6 454 272 6 41 chr1 114354203 114354372 -167839292 - L1ME3A LINE L1 -464 5775 5613 188 175 123 70 chr1 114355908 114355965 -167837699 + L2 LINE L2 2787 2846 -468 2692 30 0 0 chr1 114356768 114357068 -167836596 + AluY SINE Alu 1 300 -11 258 237 48 167 chr1 114357647 114357767 -167835897 + MIR SINE MIR 99 191 -71 2113 52 0 0 chr1 114357767 114358017 -167835647 + AluY SINE Alu 44 293 -18 258 237 48 167 chr1 114358017 114358082 -167835582 + MIR SINE MIR 191 262 0 565 342 88 62 chr1 114358351 114359112 -167834552 - L3 LINE CR1 -110 1467 687 21 82 0 0 chr1 114359135 114359184 -167834480 + AT_rich Low_complexity Low_complexity 1 49 0 367 238 49 43 chr1 114359194 114359358 -167834306 - L1ME4a LINE L1 -3 6118 5954 280 125 21 0 chr1 114359466 114359514 -167834150 - L1MA5 LINE L1 -11 6289 6241 2036 116 17 0 chr1 114359812 114360105 -167833559 - AluSq SINE Alu -15 298 1 1364 246 21 11 chr1 114360105 114360478 -167833186 - L1ME3A LINE L1 -1189 5026 4647 1699 241 64 49 chr1 114361078 114361811 -167831853 - L1ME3A LINE L1 -1593 4622 3879 324 0 0 0 chr1 114361883 114361919 -167831745 + (TG)n Simple_repeat Simple_repeat 2 37 0 540 321 96 17 chr1 114362406 114362529 -167831135 + MIR SINE MIR 4 116 -146 279 79 0 0 chr1 114362529 114362567 -167831097 + (ATG)n Simple_repeat Simple_repeat 3 40 0 540 321 96 17 chr1 114362567 114362683 -167830981 + MIR SINE MIR 116 262 0 540 228 16 8 chr1 114362696 114362819 -167830845 + L2 LINE L2 3190 3313 0 429 268 47 0 chr1 114363020 114363147 -167830517 + MER94 DNA DNA 2 134 0 1594 135 35 4 chr1 114364376 114364812 -167828852 + LTR54 LTR ERV1 1 510 0 22 0 0 0 chr1 114364883 114364905 -167828759 + AT_rich Low_complexity Low_complexity 1 22 0 901 133 0 12 chr1 114365463 114365628 -167828036 + (TTTC)n Simple_repeat Simple_repeat 3 165 0 242 179 0 0 chr1 114365628 114365667 -167827997 - Alu SINE Alu -28 138 100 1494 163 19 26 chr1 114365668 114365938 -167827726 - AluSx SINE Alu -44 268 1 29 47 0 0 chr1 114367724 114367767 -167825897 + AT_rich Low_complexity Low_complexity 1 43 0 1912 211 61 79 chr1 114367786 114368421 -167825243 + MLT1E3 LTR MaLR 1 624 0 23 33 0 0 chr1 114368657 114368687 -167824977 + AT_rich Low_complexity Low_complexity 1 30 0 183 308 0 0 chr1 114368720 114368759 -167824905 + MIR SINE MIR 111 149 -59 221 345 9 27 chr1 114369730 114369840 -167823824 - L2 LINE L2 -1178 2136 2029 186 371 19 9 chr1 114369913 114370018 -167823646 - L2 LINE L2 -1429 1885 1780 * 208 354 39 39 chr1 114369997 114370127 -167823537 + L2 LINE L2 3113 3242 -30 28 71 0 0 chr1 114370939 114370995 -167822669 + AT_rich Low_complexity Low_complexity 1 56 0 301 267 83 8 chr1 114371330 114371450 -167822214 - L1ME3A LINE L1 -2821 3394 3266 2270 64 32 6 chr1 114371450 114371763 -167821901 - L1PA7 LINE L1 0 6154 5834 5045 67 8 0 chr1 114371763 114372875 -167820789 + L1PA7 LINE L1 4701 5819 -335 607 235 80 125 chr1 114372871 114373334 -167820330 - L1ME3A LINE L1 -2937 3278 2837 * 684 216 7 14 chr1 114373336 114373475 -167820189 - AluJ SINE Alu -15 297 160 234 299 0 0 chr1 114373485 114373562 -167820102 - L1MEc LINE L1 -3026 3189 3113 1027 166 0 0 chr1 114373577 114373734 -167819930 - AluJ SINE Alu -155 157 1 1008 256 46 91 chr1 114373750 114373879 -167819785 - L1MEc LINE L1 -3379 2836 2703 1796 170 10 0 chr1 114373879 114374185 -167819479 + AluSx SINE Alu 1 309 -3 1008 256 46 91 chr1 114374185 114375006 -167818658 - L1MEc LINE L1 -3512 2703 1974 469 348 48 9 chr1 114375023 114375250 -167818414 - L1MEc LINE L1 -5706 499 264 224 214 0 0 chr1 114376212 114376254 -167817410 + (CA)n Simple_repeat Simple_repeat 1 42 0 361 281 12 0 chr1 114377576 114377658 -167816006 - MIR3 SINE MIR -34 174 92 22 0 0 0 chr1 114377873 114377895 -167815769 + AT_rich Low_complexity Low_complexity 1 22 0 749 314 104 32 chr1 114378846 114379385 -167814279 + L2 LINE L2 2476 3047 -266 386 220 173 27 chr1 114379719 114379869 -167813795 + L2 LINE L2 3142 3313 0 2204 19 0 0 chr1 114379989 114380245 -167813419 + L1PA5 LINE L1 5899 6154 0 687 109 0 31 chr1 114381243 114381371 -167812293 + (TCCCC)n Simple_repeat Simple_repeat 2 125 0 1953 118 30 14 chr1 114381371 114381667 -167811997 - AluSx SINE Alu -11 301 1 766 314 29 0 chr1 114381799 114382044 -167811620 + MIR SINE MIR 9 260 -2 393 276 71 63 chr1 114382623 114382862 -167810802 - MIR SINE MIR -9 253 13 214 276 0 0 chr1 114383539 114383597 -167810067 + MIR SINE MIR 180 237 -25 22 35 0 0 chr1 114383892 114383921 -167809743 + AT_rich Low_complexity Low_complexity 1 29 0 801 245 181 73 chr1 114385160 114385652 -167808012 + MLT1G LTR MaLR 1 584 -6 203 217 43 14 chr1 114386340 114386409 -167807255 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 184 351 147 35 chr1 114387276 114387983 -167805681 + L2 LINE L2 1525 2310 -1004 21 0 0 0 chr1 114389657 114389678 -167803986 + AT_rich Low_complexity Low_complexity 1 21 0 245 298 127 78 chr1 114389984 114390205 -167803459 + L2 LINE L2 1948 2194 -1120 623 48 0 12 chr1 114390205 114390289 -167803375 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 245 298 127 78 chr1 114390289 114390413 -167803251 + L2 LINE L2 2194 2310 -1004 1961 193 8 11 chr1 114390449 114390842 -167802822 + MLT1B LTR MaLR 1 505 0 376 355 207 21 chr1 114390842 114391363 -167802301 + L2 LINE L2 2344 2961 -353 622 283 33 67 chr1 114391404 114391644 -167802020 - MIR SINE MIR 0 262 31 284 315 14 103 chr1 114391763 114391909 -167801755 + L2 LINE L2 3136 3268 -4 1638 178 78 32 chr1 114392069 114392417 -167801247 - THE1B LTR MaLR 0 364 1 318 173 0 0 chr1 114392607 114392682 -167800982 + CT-rich Low_complexity Low_complexity 2 76 0 198 0 0 0 chr1 114394402 114394424 -167799240 + (CA)n Simple_repeat Simple_repeat 2 23 0 1005 199 171 57 chr1 114394550 114394902 -167798762 - MSTD LTR MaLR -2 394 3 201 176 0 0 chr1 114395207 114395241 -167798423 + T-rich Low_complexity Low_complexity 1 34 0 557 282 197 0 chr1 114395304 114395364 -167798300 - MIR SINE MIR 0 262 215 278 26 26 0 chr1 114395364 114395403 -167798261 + (CA)n Simple_repeat Simple_repeat 1 40 0 557 282 197 0 chr1 114395403 114395555 -167798109 - MIR SINE MIR -47 215 8 225 0 0 0 chr1 114395589 114395614 -167798050 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3139 273 58 58 chr1 114395614 114396017 -167797647 - L1MEc LINE L1 -4665 1731 1329 2037 136 0 3 chr1 114396017 114396311 -167797353 + AluSx SINE Alu 1 293 -19 3139 273 58 58 chr1 114396311 114397455 -167796209 - L1MEc LINE L1 -5066 1330 184 248 158 0 146 chr1 114397461 114397543 -167796121 - L1MEc LINE L1 -6282 114 45 29 0 0 0 chr1 114397552 114397581 -167796083 + AT_rich Low_complexity Low_complexity 1 29 0 201 232 196 0 chr1 114397795 114397851 -167795813 + MIR SINE MIR 120 186 -76 306 339 134 6 chr1 114398741 114398912 -167794752 + MER91A DNA MER1_type 4 196 0 423 349 114 29 chr1 114399138 114399823 -167793841 + L2 LINE L2 1988 2730 -584 222 302 158 35 chr1 114399855 114400057 -167793607 - MIR SINE MIR -7 255 29 * 253 312 128 46 chr1 114400043 114400261 -167793403 + MIR SINE MIR 27 262 0 182 400 67 28 chr1 114400299 114400479 -167793185 + L2 LINE L2 3046 3232 -40 1366 270 34 83 chr1 114401419 114402153 -167791511 - L1ME3A LINE L1 -37 6133 5436 604 260 67 18 chr1 114402676 114402914 -167790750 + MLT1J2 LTR MaLR 192 450 0 2295 36 4 4 chr1 114404339 114404616 -167789048 - AluY SINE Alu -1 310 34 373 268 96 48 chr1 114404662 114404912 -167788752 + MLT1J1 LTR MaLR 183 444 -2 849 350 125 31 chr1 114404990 114405883 -167787781 + L3 LINE CR1 569 1545 -32 534 278 65 39 chr1 114407205 114407355 -167786309 - L1MEc LINE L1 -3519 2696 2551 3197 220 12 6 chr1 114407355 114408004 -167785660 + MER82 DNA MER2_type 1 653 0 534 278 65 39 chr1 114408004 114408238 -167785426 - L1MEc LINE L1 -3664 2551 2302 370 215 139 0 chr1 114408271 114408350 -167785314 - U6 snRNA snRNA -17 90 1 488 288 34 6 chr1 114408432 114408609 -167785055 - L1MEc LINE L1 -4102 2294 2113 206 135 19 39 chr1 114409260 114409312 -167784352 + (TTA)n Simple_repeat Simple_repeat 1 51 0 315 221 88 7 chr1 114409312 114409448 -167784216 - L1ME4a LINE L1 -5 6116 5970 620 305 49 0 chr1 114409525 114409728 -167783936 + MIR SINE MIR 50 262 0 357 294 259 12 chr1 114410141 114410311 -167783353 - MIR SINE MIR -49 213 2 22 0 0 0 chr1 114410760 114410782 -167782882 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 114410840 114410869 -167782795 + AT_rich Low_complexity Low_complexity 1 29 0 2038 122 7 3 chr1 114410927 114411222 -167782442 - AluSx SINE Alu -16 296 1 2400 61 0 3 chr1 114412388 114412682 -167780982 + AluY SINE Alu 1 293 -18 373 338 105 52 chr1 114413073 114413596 -167780068 - L2 LINE L2 -459 2855 2305 236 336 101 8 chr1 114413598 114413717 -167779947 - MIR SINE MIR -6 256 127 494 293 22 60 chr1 114413866 114414078 -167779586 + MIR SINE MIR 3 204 -58 256 187 13 13 chr1 114414091 114414166 -167779498 + (TA)n Simple_repeat Simple_repeat 2 76 0 21 36 0 0 chr1 114414449 114414477 -167779187 + AT_rich Low_complexity Low_complexity 1 28 0 544 308 95 53 chr1 114414901 114415300 -167778364 - L2 LINE L2 0 3272 2857 29 70 0 0 chr1 114417138 114417195 -167776469 + AT_rich Low_complexity Low_complexity 1 57 0 1194 174 59 0 chr1 114417556 114417826 -167775838 - L1MA8 LINE L1 -3 6288 6003 30 0 0 0 chr1 114419453 114419483 -167774181 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr1 114420490 114420522 -167773142 + AT_rich Low_complexity Low_complexity 1 32 0 467 179 50 100 chr1 114420569 114420651 -167773013 + MIR SINE MIR 127 201 -61 2287 107 0 0 chr1 114420651 114420951 -167772713 + AluSg SINE Alu 3 302 -8 467 179 50 100 chr1 114420951 114421008 -167772656 + MIR SINE MIR 201 259 -3 189 107 0 0 chr1 114421300 114421328 -167772336 + (T)n Simple_repeat Simple_repeat 1 28 0 481 243 18 0 chr1 114421773 114421884 -167771780 + MER81 DNA DNA 1 113 -1 262 258 118 11 chr1 114422000 114422093 -167771571 + MIR SINE MIR 72 174 -88 339 102 0 0 chr1 114422970 114423019 -167770645 + MADE1 DNA Mariner 31 79 -1 237 303 0 0 chr1 114423097 114423163 -167770501 + L2 LINE L2 2903 2968 -304 188 295 13 39 chr1 114423328 114423406 -167770258 + L2 LINE L2 3234 3309 -4 269 373 9 9 chr1 114423430 114423491 -167770173 + MIR3 SINE MIR 54 117 -91 3886 136 22 6 chr1 114423491 114424132 -167769532 + MER39B LTR ERV1 3 653 0 269 373 9 9 chr1 114424132 114424180 -167769484 + MIR3 SINE MIR 116 163 -45 2329 75 0 3 chr1 114424543 114424836 -167768828 - AluY SINE Alu -19 292 1 1521 280 81 28 chr1 114425033 114425572 -167768092 + MLT1E LTR MaLR 1 593 0 530 355 38 65 chr1 114425594 114425966 -167767698 - L2 LINE L2 0 3272 2911 5437 157 10 41 chr1 114426096 114426197 -167767467 + L1PA16 LINE L1 4774 4877 -1289 191 61 30 0 chr1 114426197 114426230 -167767434 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 5437 157 10 41 chr1 114426230 114427554 -167766110 + L1PA16 LINE L1 4877 6166 0 229 313 12 12 chr1 114427570 114427653 -167766011 - L2 LINE L2 -564 2750 2668 727 244 52 16 chr1 114427677 114427958 -167765706 - MLT2E LTR ERVL -24 604 240 281 290 32 32 chr1 114427973 114428097 -167765567 + L2 LINE L2 3105 3228 -85 278 300 184 22 chr1 114429184 114429361 -167764303 + MIR SINE MIR 1 223 -39 333 0 0 0 chr1 114429361 114429398 -167764266 + (TG)n Simple_repeat Simple_repeat 2 38 0 278 300 184 22 chr1 114429398 114429443 -167764221 + MIR SINE MIR 223 259 -3 7203 182 40 16 chr1 114429627 114430713 -167762951 - L1MA9 LINE L1 0 6312 5254 1968 143 10 10 chr1 114430713 114431020 -167762644 - AluSx SINE Alu -5 307 1 7203 182 40 16 chr1 114431020 114431778 -167761886 - L1MA9 LINE L1 -1058 5254 4516 258 32 0 0 chr1 114431778 114431809 -167761855 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2108 121 0 0 chr1 114431808 114432112 -167761552 - AluSg SINE Alu 0 304 1 7203 182 40 16 chr1 114432112 114432743 -167760921 - L1MA9 LINE L1 -2099 4213 3770 222 37 0 0 chr1 114433637 114433664 -167760000 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 912 69 0 23 chr1 114433664 114433795 -167759869 - L1PA13 LINE L1 -11 6152 6025 445 352 56 41 chr1 114433986 114434324 -167759340 + L2 LINE L2 2551 2893 -421 256 208 50 142 chr1 114434598 114434718 -167758946 + L2 LINE L2 3202 3310 -3 180 341 165 0 chr1 114434884 114434975 -167758689 + MIR SINE MIR 52 157 -105 250 307 50 10 chr1 114435102 114435203 -167758461 - MIR SINE MIR 0 262 158 25 31 0 0 chr1 114435656 114435688 -167757976 + AT_rich Low_complexity Low_complexity 1 32 0 313 189 324 9 chr1 114436274 114436385 -167757279 - L2 LINE L2 0 3313 3168 37 23 0 0 chr1 114436868 114436912 -167756752 + AT_rich Low_complexity Low_complexity 1 44 0 2823 196 8 8 chr1 114437580 114438096 -167755568 + Tigger7 DNA MER2_type 1 516 -1971 645 141 0 0 chr1 114438100 114438192 -167755472 + Tigger7 DNA MER2_type 2399 2490 -1 317 284 73 68 chr1 114438947 114439507 -167754157 - L1MEc LINE L1 -4580 1816 1254 328 324 42 35 chr1 114439836 114440123 -167753541 - L1MEc LINE L1 -4794 1516 1228 950 281 27 7 chr1 114440138 114440430 -167753234 - L1ME3A LINE L1 -5 6165 5868 1198 308 97 50 chr1 114440503 114440601 -167753063 - L1MEc LINE L1 -4978 1141 1049 2222 93 0 7 chr1 114440601 114440901 -167752763 - AluY SINE Alu -13 298 1 1198 308 97 50 chr1 114440901 114441873 -167751791 - L1MEc LINE L1 -5070 1049 20 587 243 41 6 chr1 114441952 114442121 -167751543 + MIR SINE MIR 86 260 -2 22 70 0 0 chr1 114442180 114442223 -167751441 + AT_rich Low_complexity Low_complexity 1 43 0 212 331 126 8 chr1 114442284 114442411 -167751253 - L3 LINE CR1 -4 1573 1432 216 351 54 48 chr1 114444626 114444794 -167748870 + MIR SINE MIR 40 208 -54 7754 82 11 5 chr1 114444908 114445978 -167747686 - L1PA7 LINE L1 -1045 5101 4025 6752 67 1 10 chr1 114445978 114447046 -167746618 + L1PA7 LINE L1 5101 6159 0 336 265 143 20 chr1 114447128 114447275 -167746389 - MIR SINE MIR 0 262 98 23 0 0 0 chr1 114447493 114447516 -167746148 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 114447688 114447711 -167745953 + AT_rich Low_complexity Low_complexity 1 23 0 661 353 62 24 chr1 114447714 114448320 -167745344 + L2 LINE L2 2458 3078 -194 247 253 168 0 chr1 114448553 114448648 -167745016 + L2 LINE L2 3203 3313 0 22 0 0 0 chr1 114448771 114448793 -167744871 + AT_rich Low_complexity Low_complexity 1 22 0 1274 45 0 0 chr1 114450230 114450385 -167743279 - L1PA3 LINE L1 -162 5993 5839 1159 63 6 6 chr1 114450385 114450544 -167743120 + L1PA3 LINE L1 5997 6155 0 21 71 0 0 chr1 114450544 114450586 -167743078 + AT_rich Low_complexity Low_complexity 1 42 0 31 26 0 0 chr1 114450791 114450829 -167742835 + AT_rich Low_complexity Low_complexity 1 38 0 921 162 39 0 chr1 114451330 114451484 -167742180 - AluSg/x SINE Alu -17 295 136 27 0 0 0 chr1 114451723 114451750 -167741914 + AT_rich Low_complexity Low_complexity 1 27 0 1977 146 15 54 chr1 114452619 114453009 -167740655 - THE1C LTR MaLR 0 375 1 249 278 134 10 chr1 114453153 114453250 -167740414 - MIR SINE MIR -80 182 74 589 280 68 5 chr1 114454172 114454379 -167739285 - MER58A DNA MER1_type 0 224 5 301 300 87 27 chr1 114454425 114454575 -167739089 - MIR3 SINE MIR -7 201 43 266 241 0 13 chr1 114455301 114455380 -167738284 - MIR SINE MIR 0 262 185 216 305 126 42 chr1 114455566 114455661 -167738003 - L2 LINE L2 -32 3240 3138 223 290 109 36 chr1 114456039 114456177 -167737487 - L2 LINE L2 -1341 1973 1826 1056 303 143 21 chr1 114457232 114457756 -167735908 + MLT1K LTR MaLR 1 588 0 22 0 0 0 chr1 114457812 114457834 -167735830 + AT_rich Low_complexity Low_complexity 1 22 0 7110 132 11 5 chr1 114457839 114459978 -167733686 - L1MA1 LINE L1 -4 6298 4145 844 255 92 17 chr1 114461664 114461903 -167731761 + MIR SINE MIR 6 262 0 856 225 14 23 chr1 114462441 114462659 -167731005 - MER20 DNA MER1_type 0 219 4 321 376 10 36 chr1 114462665 114462859 -167730805 - MIR SINE MIR -70 192 4 578 252 75 7 chr1 114463986 114464133 -167729531 - MER5A DNA MER1_type -29 160 4 181 313 133 31 chr1 114464938 114465066 -167728598 - L2 LINE L2 -24 3289 3149 4178 79 0 0 chr1 114465263 114465806 -167727858 + L1PA8A LINE L1 5561 6103 -28 22 56 0 0 chr1 114465826 114465862 -167727802 + AT_rich Low_complexity Low_complexity 1 36 0 248 33 0 0 chr1 114466799 114466829 -167726835 + LTR6A LTR ERV1 73 102 -462 23 68 0 0 chr1 114467251 114467295 -167726369 + AT_rich Low_complexity Low_complexity 1 44 0 1319 225 54 47 chr1 114467650 114468037 -167725627 + MLT1B LTR MaLR 1 390 0 432 331 22 16 chr1 114468789 114468969 -167724695 + MIR SINE MIR 44 224 -38 233 0 62 0 chr1 114469356 114469388 -167724276 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 831 285 178 20 chr1 114469481 114469874 -167723790 - L2 LINE L2 -2510 804 350 261 272 8 96 chr1 114469880 114470005 -167723659 + MER5B DNA MER1_type 2 115 -63 6150 186 33 6 chr1 114470006 114471481 -167722183 + L1MC1 LINE L1 4806 6333 0 392 280 30 0 chr1 114471544 114471644 -167722020 - L2 LINE L2 -2947 367 265 410 286 8 0 chr1 114472551 114472670 -167720994 - L1ME LINE L1 -603 5561 5442 834 171 41 7 chr1 114472704 114472850 -167720814 - FRAM SINE Alu -22 154 4 1039 184 25 106 chr1 114472944 114473137 -167720527 - LTR36 LTR ERV1 0 611 453 1871 163 0 10 chr1 114473137 114473444 -167720220 + AluJb SINE Alu 1 304 -8 1039 184 25 106 chr1 114473444 114473571 -167720093 - LTR36 LTR ERV1 -158 453 317 213 315 0 0 chr1 114475580 114475634 -167718030 + G-rich Low_complexity Low_complexity 3 56 0 355 301 35 9 chr1 114477142 114477255 -167716409 - L2 LINE L2 0 3313 3198 191 273 0 0 chr1 114479748 114479803 -167713861 - MIR3 SINE MIR 0 208 154 180 0 0 0 chr1 114479852 114479872 -167713792 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 114481624 114481652 -167712012 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1 114482358 114482382 -167711282 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 313 294 51 78 chr1 114482517 114482772 -167710892 + L2 LINE L2 3032 3279 -34 27 0 0 0 chr1 114483248 114483275 -167710389 + AT_rich Low_complexity Low_complexity 1 27 0 800 150 0 0 chr1 114484146 114484273 -167709391 - MLT1A1 LTR MaLR -47 318 192 21 57 0 0 chr1 114484597 114484632 -167709032 + AT_rich Low_complexity Low_complexity 1 35 0 227 135 0 27 chr1 114485357 114485394 -167708270 + U6 snRNA snRNA 1 36 -71 22 80 0 0 chr1 114485999 114486049 -167707615 + AT_rich Low_complexity Low_complexity 1 50 0 365 64 71 34 chr1 114490344 114490456 -167703208 - L1PA16 LINE L1 -1 6162 6025 1187 261 209 27 chr1 114492191 114492937 -167700727 + HAL1 LINE L1 1047 1928 -579 228 250 26 0 chr1 114493076 114493152 -167700512 + HAL1 LINE L1 2075 2152 -355 352 188 113 53 chr1 114493485 114493700 -167699964 + HAL1b LINE L1 828 2448 -59 28 71 0 0 chr1 114494037 114494093 -167699571 + AT_rich Low_complexity Low_complexity 1 56 0 25 75 0 0 chr1 114494271 114494324 -167699340 + AT_rich Low_complexity Low_complexity 1 53 0 7285 35 5 0 chr1 114494561 114495575 -167698089 + L1PA5 LINE L1 5125 6141 -13 22 0 0 0 chr1 114495575 114495597 -167698067 + AT_rich Low_complexity Low_complexity 1 22 0 403 247 32 0 chr1 114496208 114496301 -167697363 - L2 LINE L2 0 3272 3177 445 282 77 73 chr1 114497528 114497801 -167695863 - L2 LINE L2 -44 3269 2996 671 272 109 17 chr1 114497876 114498115 -167695549 + MIR SINE MIR 2 262 0 1406 336 125 53 chr1 114498123 114498442 -167695222 - L2 LINE L2 -372 2942 2647 2116 78 0 4 chr1 114498442 114498710 -167694954 + AluY SINE Alu 38 304 -7 1406 336 125 53 chr1 114498710 114499626 -167694038 - L2 LINE L2 -667 2647 1618 329 345 28 0 chr1 114499801 114499924 -167693740 + MIR SINE MIR 22 144 -64 26 30 0 0 chr1 114501106 114501139 -167692525 + AT_rich Low_complexity Low_complexity 1 33 0 357 354 114 32 chr1 114502399 114502924 -167690740 - L2 LINE L2 -337 2977 2410 253 282 146 18 chr1 114503056 114503166 -167690498 + MIR SINE MIR 88 211 -51 377 322 33 38 chr1 114503170 114503353 -167690311 + L2 LINE L2 3127 3308 -5 219 158 35 18 chr1 114504559 114504616 -167689048 + (TA)n Simple_repeat Simple_repeat 1 58 0 608 328 65 78 chr1 114506324 114506968 -167686696 - L2 LINE L2 -4 3268 2638 198 0 0 0 chr1 114507345 114507367 -167686297 + (TG)n Simple_repeat Simple_repeat 1 22 0 369 0 0 0 chr1 114507884 114507925 -167685739 + (CAA)n Simple_repeat Simple_repeat 2 42 0 423 0 0 0 chr1 114509370 114509417 -167684247 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr1 114509552 114509581 -167684083 + AT_rich Low_complexity Low_complexity 1 29 0 1525 67 0 20 chr1 114510560 114510755 -167682909 - AluY SINE Alu -16 295 105 753 305 15 48 chr1 114510956 114511068 -167682596 + MIR SINE MIR 2 116 -146 1599 115 43 146 chr1 114511068 114511486 -167682178 + THE1C LTR MaLR 1 375 0 753 305 15 48 chr1 114511486 114511642 -167682022 + MIR SINE MIR 116 261 -1 183 302 0 0 chr1 114512373 114512416 -167681248 + MIR SINE MIR 215 257 -5 285 327 98 49 chr1 114512477 114512783 -167680881 + L2 LINE L2 880 1200 -2114 2450 52 3 16 chr1 114513070 114513378 -167680286 - AluY SINE Alu -7 304 1 24 0 0 0 chr1 114513635 114513659 -167680005 + AT_rich Low_complexity Low_complexity 1 24 0 408 293 167 20 chr1 114514915 114515065 -167678599 + MER5A DNA MER1_type 18 189 0 1844 145 51 0 chr1 114515153 114515429 -167678235 - AluSx SINE Alu -22 290 1 394 330 28 0 chr1 114515830 114515939 -167677725 + L2 LINE L2 3156 3267 -5 21 36 0 0 chr1 114516078 114516106 -167677558 + AT_rich Low_complexity Low_complexity 1 28 0 345 305 14 7 chr1 114516999 114517140 -167676524 + MER103 DNA DNA 11 152 -14 21 57 0 0 chr1 114517319 114517354 -167676310 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr1 114518510 114518547 -167675117 + AT_rich Low_complexity Low_complexity 1 37 0 1874 132 4 4 chr1 114518582 114518855 -167674809 - AluSx SINE Alu -39 273 1 25 31 0 0 chr1 114520646 114520678 -167672986 + AT_rich Low_complexity Low_complexity 1 32 0 610 154 64 0 chr1 114521250 114521360 -167672304 - AluJo/FRAM SINE Alu -16 296 180 1613 153 0 0 chr1 114521363 114521599 -167672065 - AluSx SINE Alu -76 236 1 704 163 8 0 chr1 114521897 114522020 -167671644 - AluSq/x SINE Alu -189 124 1 24 0 0 0 chr1 114522825 114522849 -167670815 + AT_rich Low_complexity Low_complexity 1 24 0 383 321 15 0 chr1 114523497 114523631 -167670033 - MIR SINE MIR -52 210 75 1477 201 0 0 chr1 114523714 114523973 -167669691 - AluSx SINE Alu -15 297 39 181 307 43 79 chr1 114524539 114524679 -167668985 - MIR3 SINE MIR -68 140 6 231 256 0 11 chr1 114525422 114525496 -167668168 + (TAA)n Simple_repeat Simple_repeat 2 76 -14 1469 150 27 65 chr1 114525496 114525789 -167667875 + AluJb SINE Alu 5 286 -26 231 256 0 11 chr1 114525789 114525804 -167667860 + (TAA)n Simple_repeat Simple_repeat 76 90 0 393 316 163 30 chr1 114525839 114526140 -167667524 - L3 LINE CR1 -5 1572 1232 273 364 45 8 chr1 114527706 114527838 -167665826 + MIR3 SINE MIR 24 160 -48 193 89 44 0 chr1 114528389 114528434 -167665230 + (TTA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr1 114529782 114529804 -167663860 + AT_rich Low_complexity Low_complexity 1 22 0 595 286 50 6 chr1 114531078 114531260 -167662404 + MIR3 SINE MIR 9 198 -10 202 325 82 89 chr1 114532659 114532951 -167660713 - L2 LINE L2 -463 2851 2562 27 29 0 0 chr1 114534035 114534069 -167659595 + AT_rich Low_complexity Low_complexity 1 34 0 315 330 64 17 chr1 114534463 114534636 -167659028 + MIR SINE MIR 59 239 -23 686 278 23 0 chr1 114534902 114535077 -167658587 + L2 LINE L2 1387 1565 -1749 211 306 116 41 chr1 114535077 114535224 -167658440 + MER5B DNA MER1_type 1 158 -20 * 593 258 66 0 chr1 114535094 114535245 -167658419 - MER5A DNA MER1_type -20 169 9 * 2711 273 131 50 chr1 114535204 114536869 -167656795 + L2 LINE L2 1510 3313 0 266 147 15 73 chr1 114537320 114537388 -167656276 + L1MA9 LINE L1 6205 6274 -23 195 333 21 32 chr1 114537866 114537959 -167655705 + MIR3 SINE MIR 89 180 -28 458 290 102 5 chr1 114538022 114538208 -167655456 + MIR SINE MIR 59 262 0 868 253 22 13 chr1 114538454 114538679 -167654985 - MIR SINE MIR -35 227 1 233 270 68 37 chr1 114539744 114539907 -167653757 + L1ME4a LINE L1 5951 6118 -3 183 262 0 0 chr1 114539963 114540005 -167653659 - L2 LINE L2 -15 3257 3216 416 331 0 7 chr1 114540829 114540965 -167652699 + CT-rich Low_complexity Low_complexity 1 135 0 217 345 55 0 chr1 114541007 114541062 -167652602 - MER5B DNA MER1_type -99 79 22 288 266 122 22 chr1 114541557 114541696 -167651968 - L2 LINE L2 0 3313 3161 2297 123 126 5 chr1 114541758 114542140 -167651524 + MSTA LTR MaLR 1 428 0 1249 161 83 0 chr1 114542757 114542974 -167650690 - MER46A DNA MER2_type 0 236 2 230 306 0 0 chr1 114543007 114543069 -167650595 - MER5A DNA MER1_type 0 189 128 436 178 0 0 chr1 114543092 114543165 -167650499 + U6 snRNA snRNA 1 73 -34 272 338 0 0 chr1 114543169 114543249 -167650415 - MER5A DNA MER1_type -101 88 9 2104 121 0 0 chr1 114544312 114544601 -167649063 - AluSx SINE Alu -21 291 3 490 262 43 7 chr1 114544930 114545071 -167648593 + MIR SINE MIR 9 154 -108 2196 215 35 5 chr1 114545083 114545566 -167648098 - LTR65 LTR ERV1 -7 644 165 204 333 43 0 chr1 114545609 114545678 -167647986 + MIR SINE MIR 161 232 -30 322 278 62 42 chr1 114545881 114546025 -167647639 - MER5B DNA MER1_type -30 148 2 442 339 136 28 chr1 114546116 114546235 -167647429 - L3 LINE CR1 -36 1541 1436 1371 150 118 57 chr1 114546235 114546515 -167647149 - AluSx SINE Alu -15 297 1 442 339 136 28 chr1 114546515 114546785 -167646879 - L3 LINE CR1 -141 1436 1110 22 0 0 0 chr1 114546921 114546943 -167646721 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 114549425 114549449 -167644215 + AT_rich Low_complexity Low_complexity 1 24 0 456 336 7 72 chr1 114550839 114551025 -167642639 + MIR SINE MIR 2 199 -63 2331 108 30 16 chr1 114551025 114551395 -167642269 + THE1C LTR MaLR 1 375 0 9030 138 72 5 chr1 114551396 114552876 -167640788 + THE1C-int LTR MaLR 2 1580 0 2245 137 42 0 chr1 114552877 114553236 -167640428 + THE1C LTR MaLR 2 375 0 456 336 7 72 chr1 114553236 114553322 -167640342 + MIR SINE MIR 198 260 -2 189 107 0 0 chr1 114554190 114554218 -167639446 + (A)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr1 114554970 114555001 -167638663 + AT_rich Low_complexity Low_complexity 1 31 0 186 295 128 58 chr1 114555298 114555438 -167638226 - L2 LINE L2 -327 2945 2791 429 291 137 26 chr1 114556902 114557136 -167636528 + MIR SINE MIR 3 262 0 27 29 0 0 chr1 114557146 114557180 -167636484 + AT_rich Low_complexity Low_complexity 1 34 0 218 95 24 0 chr1 114557712 114557754 -167635910 + (TAA)n Simple_repeat Simple_repeat 3 45 0 403 328 31 46 chr1 114557758 114557953 -167635711 - MIR SINE MIR -3 259 68 1320 140 40 113 chr1 114558474 114558802 -167634862 + L1MC2 LINE L1 6032 6335 -9 23 0 0 0 chr1 114559955 114559978 -167633686 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr1 114561042 114561087 -167632577 + AT_rich Low_complexity Low_complexity 1 45 0 280 73 98 0 chr1 114563438 114563479 -167630185 - AluSg/x SINE Alu -189 111 67 252 59 0 0 chr1 114565332 114565366 -167628298 + (CA)n Simple_repeat Simple_repeat 2 35 0 266 0 29 0 chr1 114565558 114565592 -167628072 + (TA)n Simple_repeat Simple_repeat 2 36 0 293 167 22 22 chr1 114566523 114566613 -167627051 + (TA)n Simple_repeat Simple_repeat 1 90 0 9704 129 66 52 chr1 114567445 114569205 -167624459 + Tigger2 DNA MER2_type 930 2713 -5 333 285 173 33 chr1 114569823 114570037 -167623627 + MLT1H1 LTR MaLR 312 555 0 23 33 0 0 chr1 114570321 114570351 -167623313 + AT_rich Low_complexity Low_complexity 1 30 0 378 278 64 60 chr1 114571123 114571309 -167622355 + L1ME4a LINE L1 5730 5919 -202 7162 55 0 1 chr1 114571309 114572901 -167620763 + L1PA5 LINE L1 4559 6149 -5 378 278 64 60 chr1 114572901 114572948 -167620716 + L1ME4a LINE L1 5919 5964 -157 21 0 0 0 chr1 114573065 114573086 -167620578 + AT_rich Low_complexity Low_complexity 1 21 0 361 307 37 8 chr1 114573108 114573349 -167620315 + L1ME4a LINE L1 5609 5856 -265 222 37 0 0 chr1 114573596 114573623 -167620041 + (CA)n Simple_repeat Simple_repeat 2 28 0 249 250 14 0 chr1 114575106 114575178 -167618486 - MER116 DNA Mariner -7 73 1 211 328 0 0 chr1 114575795 114575853 -167617811 + CT-rich Low_complexity Low_complexity 4 61 0 339 44 0 0 chr1 114578654 114578699 -167614965 + (CA)n Simple_repeat Simple_repeat 2 46 0 235 291 91 9 chr1 114578908 114579018 -167614646 - MER112 DNA MER1_type -6 254 136 324 0 0 0 chr1 114579212 114579248 -167614416 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1893 37 44 67 chr1 114579730 114580000 -167613664 - AluY SINE Alu -6 305 42 401 246 27 27 chr1 114581491 114581601 -167612063 - MIR SINE MIR -96 166 57 2094 149 0 0 chr1 114581808 114582116 -167611548 + AluSx SINE Alu 1 308 -4 1447 276 44 55 chr1 114582226 114582792 -167610872 - MLT1E LTR MaLR 0 593 34 36 70 0 0 chr1 114583011 114583082 -167610582 + AT_rich Low_complexity Low_complexity 1 71 0 490 297 41 41 chr1 114583304 114583499 -167610165 + L2 LINE L2 3103 3297 -16 185 359 0 0 chr1 114583586 114583639 -167610025 - L2 LINE L2 -205 3067 3015 273 349 138 39 chr1 114584796 114585766 -167607898 - L2 LINE L2 -640 2674 1609 727 289 62 8 chr1 114585935 114586177 -167607487 - MIR SINE MIR 0 262 8 297 304 27 11 chr1 114589666 114589769 -167603895 - MIR3 SINE MIR -36 172 65 191 176 39 0 chr1 114590097 114590148 -167603516 + (CATA)n Simple_repeat Simple_repeat 4 56 0 266 260 27 0 chr1 114591387 114591460 -167602204 - MIR SINE MIR -96 166 92 343 244 13 0 chr1 114591708 114591786 -167601878 + MER20B DNA MER1_type 3 81 -702 1135 225 181 39 chr1 114591816 114592247 -167601417 + MLT1D LTR MaLR 5 496 -9 1183 277 77 30 chr1 114592507 114593016 -167600648 + MER20B DNA MER1_type 162 694 -89 256 200 17 17 chr1 114593264 114593324 -167600340 + CT-rich Low_complexity Low_complexity 1 60 0 2515 48 0 10 chr1 114593428 114593740 -167599924 + AluY SINE Alu 3 311 0 383 323 39 8 chr1 114595671 114595801 -167597863 - MIR SINE MIR -77 185 52 21 0 0 0 chr1 114598518 114598539 -167595125 + AT_rich Low_complexity Low_complexity 1 21 0 386 239 36 58 chr1 114599156 114599294 -167594370 - MIR SINE MIR -46 216 82 26 0 0 0 chr1 114599643 114599669 -167593995 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr1 114599770 114599797 -167593867 + AT_rich Low_complexity Low_complexity 1 27 0 1906 157 0 0 chr1 114600672 114600958 -167592706 - AluSx SINE Alu -26 286 1 228 307 69 30 chr1 114601347 114601448 -167592216 - L2 LINE L2 -8 3264 3160 2247 188 31 43 chr1 114601498 114602009 -167591655 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr1 114602427 114602451 -167591213 + AT_rich Low_complexity Low_complexity 1 24 0 3031 305 51 24 chr1 114602458 114603582 -167590082 + L2 LINE L2 1692 2845 -469 315 272 110 59 chr1 114603589 114603725 -167589939 + L2 LINE L2 3129 3271 -1 297 0 0 0 chr1 114604442 114604475 -167589189 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 233 0 0 chr1 114604973 114605016 -167588648 - MIR SINE MIR -126 136 94 2141 109 0 3 chr1 114605017 114605310 -167588354 + AluSx SINE Alu 1 292 -20 623 286 106 0 chr1 114605347 114605564 -167588100 + MIR SINE MIR 21 260 -2 194 269 19 19 chr1 114605573 114605625 -167588039 - MIR SINE MIR -134 74 23 396 311 131 14 chr1 114606102 114606324 -167587340 - MIR SINE MIR 0 262 15 210 91 0 0 chr1 114608707 114608740 -167584924 + (TG)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr1 114608744 114608774 -167584890 + AT_rich Low_complexity Low_complexity 1 30 0 1555 178 0 38 chr1 114608779 114609071 -167584593 - AluJo SINE Alu -31 281 1 308 395 37 0 chr1 114609072 114609206 -167584458 + L2 LINE L2 3134 3272 0 196 410 10 0 chr1 114609688 114609788 -167583876 + MIR3 SINE MIR 3 103 -105 63 62 0 0 chr1 114610932 114611044 -167582620 + AT_rich Low_complexity Low_complexity 1 112 0 429 264 104 0 chr1 114611239 114611345 -167582319 + L2 LINE L2 3156 3272 0 319 332 127 24 chr1 114611942 114612147 -167581517 - MIR SINE MIR -6 256 31 28 48 0 0 chr1 114612944 114612986 -167580678 + AT_rich Low_complexity Low_complexity 1 42 0 27 73 0 0 chr1 114613131 114613186 -167580478 + AT_rich Low_complexity Low_complexity 1 55 0 297 284 34 19 chr1 114613972 114614089 -167579575 - MIR SINE MIR -68 140 43 394 318 30 0 chr1 114615411 114615543 -167578121 - MER5A DNA MER1_type 0 189 54 1146 239 0 0 chr1 114615570 114615792 -167577872 + L1PA13 LINE L1 2 223 -6564 * 14911 238 21 17 chr1 114615790 114615859 -167577805 + L1PA13 LINE L1 1534 1601 -5196 243 88 0 0 chr1 114615859 114615893 -167577771 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14911 238 21 17 chr1 114615893 114616163 -167577501 + L1PA13 LINE L1 1601 1868 -4929 2490 71 3 0 chr1 114616163 114616471 -167577193 + AluY SINE Alu 1 309 -2 14911 238 21 17 chr1 114616471 114620419 -167573245 + L1PA13 LINE L1 1868 5848 -949 885 315 54 33 chr1 114620422 114620629 -167573035 + L2 LINE L2 2776 2977 -336 1962 127 78 26 chr1 114620629 114620975 -167572689 + THE1B LTR MaLR 1 364 0 885 315 54 33 chr1 114620975 114621284 -167572380 + L2 LINE L2 2977 3307 -6 190 267 208 10 chr1 114622608 114622709 -167570955 - L2 LINE L2 -5 3267 3147 432 241 132 42 chr1 114622787 114622999 -167570665 + L3 LINE CR1 1198 1428 -149 507 69 54 23 chr1 114623680 114623810 -167569854 + (TCTA)n Simple_repeat Simple_repeat 1 134 0 372 220 0 0 chr1 114623922 114624040 -167569624 + (TA)n Simple_repeat Simple_repeat 1 118 0 253 286 57 19 chr1 114625183 114625288 -167568376 - MIR SINE MIR -65 197 89 1090 269 23 47 chr1 114626293 114626701 -167566963 + MLT2C1 LTR ERVL 2 663 0 267 183 21 11 chr1 114627254 114627347 -167566317 + (TA)n Simple_repeat Simple_repeat 1 94 0 2160 102 3 3 chr1 114627840 114628135 -167565529 + AluSx SINE Alu 2 296 -16 1975 206 57 50 chr1 114628177 114628874 -167564790 + L1ME1 LINE L1 5385 6118 -48 22 35 0 0 chr1 114628877 114628906 -167564758 + AT_rich Low_complexity Low_complexity 1 29 0 743 197 0 0 chr1 114628908 114629035 -167564629 + FLAM_C SINE Alu 2 128 -5 22 88 0 0 chr1 114629101 114629158 -167564506 + AT_rich Low_complexity Low_complexity 1 57 0 519 219 9 0 chr1 114630730 114630835 -167562829 + FLAM_A SINE Alu 2 107 -35 451 330 53 16 chr1 114630975 114631163 -167562501 + MIR SINE MIR 51 245 -17 189 0 0 0 chr1 114631694 114631715 -167561949 + (GA)n Simple_repeat Simple_repeat 1 21 0 233 181 60 0 chr1 114632071 114632154 -167561510 + (TA)n Simple_repeat Simple_repeat 1 88 0 706 298 30 38 chr1 114632394 114632659 -167561005 + L2 LINE L2 1984 2246 -1068 293 276 212 20 chr1 114632681 114632884 -167560780 + L2 LINE L2 2503 2744 -570 2436 50 0 7 chr1 114632890 114633190 -167560474 + AluY SINE Alu 1 298 -13 809 60 0 0 chr1 114633196 114633296 -167560368 + AluY SINE Alu 209 308 -3 666 312 135 43 chr1 114633297 114633677 -167559987 + L2 LINE L2 2741 3179 -134 2508 39 0 19 chr1 114633677 114633985 -167559679 - AluY SINE Alu -9 302 1 666 312 135 43 chr1 114633985 114634134 -167559530 + L2 LINE L2 3179 3313 0 342 320 107 11 chr1 114634138 114634316 -167559348 + MIR SINE MIR 56 250 -12 23 68 0 0 chr1 114635180 114635224 -167558440 + AT_rich Low_complexity Low_complexity 1 44 0 192 158 0 0 chr1 114635961 114635999 -167557665 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 409 230 0 0 chr1 114636128 114636227 -167557437 + MER33 DNA MER1_type 1 88 -97 833 181 74 9 chr1 114636277 114636493 -167557171 + MER33 DNA MER1_type 91 320 -4 1160 212 14 0 chr1 114636512 114636724 -167556940 + MER58A DNA MER1_type 9 223 -1 439 311 139 68 chr1 114638710 114639280 -167554384 + L2 LINE L2 1919 2528 -786 25 0 0 0 chr1 114639328 114639353 -167554311 + AT_rich Low_complexity Low_complexity 1 25 0 1257 123 170 36 chr1 114641885 114641941 -167551723 - L1MA7 LINE L1 -1 6290 6243 207 0 0 0 chr1 114641941 114641964 -167551700 + (TA)n Simple_repeat Simple_repeat 2 24 0 1257 123 170 36 chr1 114641964 114642183 -167551481 - L1MA7 LINE L1 -48 6243 5978 201 268 159 36 chr1 114642560 114642698 -167550966 - MIR SINE MIR -1 261 107 291 344 153 0 chr1 114643872 114644003 -167549661 - L3 LINE CR1 -17 1560 1410 28 29 0 0 chr1 114644567 114644602 -167549062 + AT_rich Low_complexity Low_complexity 1 35 0 250 242 121 57 chr1 114647011 114647135 -167546529 + L2 LINE L2 3181 3312 -1 461 281 169 11 chr1 114648897 114649075 -167544589 + LTR33 LTR ERVL 9 214 -307 26 30 0 0 chr1 114649250 114649283 -167544381 + AT_rich Low_complexity Low_complexity 1 33 0 1143 198 134 0 chr1 114649292 114649423 -167544241 - AluJb SINE Alu -15 287 175 306 0 0 0 chr1 114649423 114649457 -167544207 + (TG)n Simple_repeat Simple_repeat 1 34 0 1143 198 134 0 chr1 114649457 114649578 -167544086 - AluJb SINE Alu -127 175 1 236 306 118 0 chr1 114649578 114649663 -167544001 + LTR33 LTR ERVL 425 519 -2 183 323 108 42 chr1 114650102 114650362 -167543302 + L2 LINE L2 2045 2321 -993 391 295 208 14 chr1 114650515 114650722 -167542942 - MLT1J LTR MaLR -39 472 226 1785 139 3 66 chr1 114652254 114652571 -167541093 - AluJb SINE Alu -13 299 3 2171 110 0 3 chr1 114653125 114653417 -167540247 - AluSx SINE Alu -16 296 6 384 225 80 58 chr1 114653641 114653779 -167539885 - L2 LINE L2 -4 3309 3169 242 230 35 11 chr1 114655003 114655090 -167538574 + (TA)n Simple_repeat Simple_repeat 2 90 0 259 359 70 19 chr1 114655606 114655762 -167537902 - MIR3 SINE MIR -14 194 31 2251 216 32 12 chr1 114656178 114656683 -167536981 - MLT2B2 LTR ERVL 0 515 1 214 167 0 77 chr1 114658977 114659055 -167534609 + GA-rich Low_complexity Low_complexity 1 72 0 339 330 88 11 chr1 114659675 114659857 -167533807 - MIR SINE MIR -64 198 3 190 254 0 85 chr1 114660620 114660679 -167532985 - MIR3 SINE MIR -18 190 137 268 301 90 19 chr1 114661182 114661338 -167532326 - MIR SINE MIR -14 248 82 27 62 0 0 chr1 114661486 114661534 -167532130 + AT_rich Low_complexity Low_complexity 1 48 0 1536 133 27 44 chr1 114662416 114662710 -167530954 + THE1C LTR MaLR 2 290 -85 4840 105 11 7 chr1 114662711 114663414 -167530250 + THE1C-int LTR MaLR 875 1580 0 1866 175 16 21 chr1 114663414 114663791 -167529873 + THE1C LTR MaLR 1 375 0 708 281 68 25 chr1 114664049 114664284 -167529380 + L2 LINE L2 274 518 -2796 572 248 40 43 chr1 114664294 114664618 -167529046 + L2 LINE L2 1364 1785 -1529 920 203 122 20 chr1 114664621 114664867 -167528797 + L2 LINE L2 2191 2461 -853 231 170 0 0 chr1 114664996 114665043 -167528621 + GA-rich Low_complexity Low_complexity 2 48 0 23 68 0 0 chr1 114665246 114665290 -167528374 + AT_rich Low_complexity Low_complexity 1 44 0 1296 243 120 25 chr1 114665572 114666005 -167527659 + MLT2B1 LTR ERVL 1 474 -46 181 338 73 52 chr1 114666433 114666705 -167526959 + L2 LINE L2 3033 3310 -3 1636 141 38 31 chr1 114667084 114667374 -167526290 + AluSx SINE Alu 12 303 -9 22 0 0 0 chr1 114667429 114667451 -167526213 + AT_rich Low_complexity Low_complexity 1 22 0 1894 100 4 11 chr1 114667534 114667805 -167525859 - AluSx SINE Alu -43 269 1 2221 208 39 10 chr1 114667989 114668480 -167525184 - MLT1D LTR MaLR 0 505 1 289 423 7 0 chr1 114668553 114668690 -167524974 + L3 LINE CR1 1360 1497 -80 2574 24 3 0 chr1 114669071 114669369 -167524295 - AluY SINE Alu -12 299 1 381 362 7 7 chr1 114669439 114669580 -167524084 - MIR3 SINE MIR -51 157 17 24 32 0 0 chr1 114671075 114671106 -167522558 + AT_rich Low_complexity Low_complexity 1 31 0 254 324 49 54 chr1 114671757 114671961 -167521703 - L2 LINE L2 0 3313 3111 313 339 8 23 chr1 114672177 114672307 -167521357 - L2 LINE L2 -213 3059 2932 2423 61 3 10 chr1 114673809 114674122 -167519542 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 114674122 114674147 -167519517 + (TA)n Simple_repeat Simple_repeat 1 25 0 27 92 0 0 chr1 114677298 114677374 -167516290 + AT_rich Low_complexity Low_complexity 1 76 0 44 0 0 0 chr1 114677689 114677733 -167515931 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 114678450 114678471 -167515193 + AT_rich Low_complexity Low_complexity 1 21 0 270 193 0 0 chr1 114680035 114680092 -167513572 + (CAG)n Simple_repeat Simple_repeat 2 58 0 14339 162 42 13 chr1 114683231 114685874 -167507790 - Tigger2 DNA MER2_type 0 2718 1 433 277 95 0 chr1 114686267 114686415 -167507249 + L2 LINE L2 3152 3313 0 297 349 57 87 chr1 114686493 114687000 -167506664 + L2 LINE L2 2365 2856 -458 507 299 166 53 chr1 114687290 114687664 -167506000 - MLT1G1 LTR MaLR 0 595 180 1772 146 9 50 chr1 114687688 114688009 -167505655 + AluJb SINE Alu 1 308 -4 243 161 0 0 chr1 114688341 114688397 -167505267 + (TA)n Simple_repeat Simple_repeat 2 57 0 295 324 18 9 chr1 114688424 114688535 -167505129 + L1ME LINE L1 864 975 -5956 501 279 7 7 chr1 114688951 114689087 -167504577 + MER106B DNA MER1_type 10 145 -914 3437 129 25 7 chr1 114689531 114690120 -167503544 - L1MA2 LINE L1 0 6304 5705 833 170 17 8 chr1 114690120 114690296 -167503368 + L1MA2 LINE L1 5502 5683 -491 905 235 63 60 chr1 114690594 114690943 -167502721 - LTR37A LTR ERV1 -27 399 50 22 35 0 0 chr1 114690991 114691020 -167502644 + AT_rich Low_complexity Low_complexity 1 29 0 4291 192 52 5 chr1 114691375 114692389 -167501275 + L1MB4 LINE L1 5107 6174 -6 2623 191 105 15 chr1 114693424 114694033 -167499631 - MER39 LTR ERV1 -2 705 1 272 333 83 7 chr1 114694266 114694410 -167499254 + L3 LINE CR1 234 388 -1189 232 384 99 19 chr1 114694954 114695217 -167498447 + L2 LINE L2 2693 2976 -338 2421 74 0 0 chr1 114695413 114695712 -167497952 - AluY SINE Alu -12 299 1 286 333 22 52 chr1 114695716 114695851 -167497813 - MIR SINE MIR -100 162 32 1960 121 33 36 chr1 114696452 114696759 -167496905 + THE1B LTR MaLR 59 364 0 10671 116 5 14 chr1 114696759 114698352 -167495312 + THE1B-int LTR MaLR 1 1578 -2 2390 116 28 19 chr1 114698354 114698715 -167494949 + THE1B LTR MaLR 1 364 0 1601 171 48 17 chr1 114698854 114699146 -167494518 + AluJb SINE Alu 3 303 -9 228 330 51 0 chr1 114699719 114699837 -167493827 + L1ME LINE L1 1226 1349 -5074 411 270 56 76 chr1 114700127 114700744 -167492920 + L1ME LINE L1 1539 2146 -4795 317 163 0 0 chr1 114700861 114700914 -167492750 + Alu SINE Alu 2 44 -258 1013 132 11 39 chr1 114700924 114701106 -167492558 + AluSg/x SINE Alu 136 312 0 804 285 106 49 chr1 114701110 114701804 -167491860 + L1ME LINE L1 3053 3706 -3235 720 78 0 0 chr1 114701804 114701907 -167491757 + L1PB1 LINE L1 6048 6150 -1 5149 34 3 2 chr1 114701909 114702527 -167491137 + L1PA4 LINE L1 5534 6152 -3 804 285 106 49 chr1 114702527 114702689 -167490975 + L1ME LINE L1 3706 3961 -2980 1182 332 170 36 chr1 114752836 114754175 -167439489 - L2 LINE L2 -5 3308 1778 27 29 0 0 chr1 114755316 114755350 -167438314 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr1 114755374 114755402 -167438262 + AT_rich Low_complexity Low_complexity 1 28 0 1454 179 18 4 chr1 114755633 114755912 -167437752 + L1PA3 LINE L1 2770 3052 -3094 1081 136 0 0 chr1 114755916 114756071 -167437593 + AluSq SINE Alu 6 160 -153 11548 116 10 62 chr1 114756179 114759339 -167434325 + L1PA3 LINE L1 3020 6004 -151 1032 47 0 0 chr1 114759439 114759566 -167434098 + L1PA3 LINE L1 6013 6139 -16 5759 116 30 8 chr1 114759583 114760926 -167432738 + L1PA10 LINE L1 4799 6176 0 291 321 12 12 chr1 114760929 114761010 -167432654 - MIR SINE MIR -162 100 20 38 75 0 0 chr1 114761026 114761106 -167432558 + AT_rich Low_complexity Low_complexity 1 80 0 268 376 52 46 chr1 114761149 114761343 -167432321 + L3 LINE CR1 29 223 -1354 240 35 0 0 chr1 114761422 114761451 -167432213 + (TG)n Simple_repeat Simple_repeat 2 30 0 278 263 13 13 chr1 114762218 114762294 -167431370 + MLT1D LTR MaLR 370 445 -60 322 339 50 8 chr1 114762451 114762572 -167431092 + MIR SINE MIR 23 148 -114 240 146 0 0 chr1 114763767 114763822 -167429842 + LTR66 LTR ERVL 385 439 -171 3766 102 8 24 chr1 114764015 114764601 -167429063 + L1PA7 LINE L1 1976 2552 -3594 12304 107 2 4 chr1 114764599 114767204 -167426460 + L1PA7 LINE L1 3560 6153 -1 761 100 109 29 chr1 114769218 114769235 -167424429 - L1P1 LINE L1 -676 5479 5465 3847 125 32 0 chr1 114769235 114769850 -167423814 - L1PA16 LINE L1 -4 6162 5528 761 100 109 29 chr1 114769850 114770028 -167423636 - L1P1 LINE L1 -690 5465 5269 4856 229 35 8 chr1 114770134 114771405 -167422259 - L1PA16 LINE L1 -825 5321 4017 801 227 115 77 chr1 114772014 114772632 -167421032 - MER34C LTR ERV1 0 595 4 2672 100 11 0 chr1 114772682 114773053 -167420611 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr1 114773073 114773099 -167420565 + AT_rich Low_complexity Low_complexity 1 26 0 285 341 0 0 chr1 114773168 114773253 -167420411 + MIR SINE MIR 50 134 -128 33 25 0 0 chr1 114773468 114773508 -167420156 + AT_rich Low_complexity Low_complexity 1 40 0 45 0 0 0 chr1 114774038 114774083 -167419581 + AT_rich Low_complexity Low_complexity 1 45 0 188 438 0 0 chr1 114775500 114775589 -167418075 - MIR SINE MIR -86 122 34 26 64 0 0 chr1 114775651 114775698 -167417966 + AT_rich Low_complexity Low_complexity 1 47 0 4194 197 46 52 chr1 114775741 114776830 -167416834 + Tigger6a DNA MER2_type 2 1083 0 230 267 23 46 chr1 114776911 114777042 -167416622 - L1MC4 LINE L1 -1 8041 7914 958 267 82 8 chr1 114777085 114777441 -167416223 - L1MC4 LINE L1 -451 7591 7210 235 279 98 33 chr1 114777486 114777608 -167416056 + L1ME4a LINE L1 5536 5665 -456 271 299 8 8 chr1 114777678 114777805 -167415859 + L1ME4a LINE L1 5777 5903 -218 26 64 0 0 chr1 114777927 114777974 -167415690 + AT_rich Low_complexity Low_complexity 1 47 0 2090 142 11 22 chr1 114778299 114778665 -167414999 - MER47A DNA MER2_type 0 366 5 39 60 0 0 chr1 114779372 114779439 -167414225 + AT_rich Low_complexity Low_complexity 1 67 0 26 64 0 0 chr1 114780045 114780092 -167413572 + AT_rich Low_complexity Low_complexity 1 47 0 1048 126 7 0 chr1 114780138 114780289 -167413375 + AluSq/x SINE Alu 1 152 -160 902 147 0 0 chr1 114780291 114780420 -167413244 + AluSg/x SINE Alu 113 241 -71 24 32 0 0 chr1 114780686 114780717 -167412947 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 114781076 114781115 -167412549 + AT_rich Low_complexity Low_complexity 1 39 0 229 313 81 10 chr1 114781561 114781660 -167412004 + MIR SINE MIR 42 147 -115 1741 108 68 0 chr1 114782326 114782575 -167411089 + AluSp SINE Alu 1 266 -47 1220 86 6 0 chr1 114782675 114782837 -167410827 - AluY SINE Alu -148 163 1 612 263 55 35 chr1 114783102 114783414 -167410250 + L1ME2 LINE L1 2046 2363 -4033 1141 208 15 27 chr1 114783489 114783749 -167409915 + AluJo SINE Alu 11 267 -45 387 244 34 44 chr1 114783769 114783974 -167409690 + L1ME2 LINE L1 5230 5432 -783 2426 242 65 6 chr1 114783999 114784692 -167408972 + L1ME2 LINE L1 5499 6232 -1 242 253 0 76 chr1 114785166 114785245 -167408419 - L1MC4 LINE L1 -40 8002 7930 812 225 32 11 chr1 114785504 114785691 -167407973 + MER2 DNA MER2_type 155 345 0 1008 262 128 18 chr1 114787011 114787602 -167406062 - LTR41 LTR ERVL -77 696 1 21 57 0 0 chr1 114789548 114789583 -167404081 + AT_rich Low_complexity Low_complexity 1 35 0 834 185 20 0 chr1 114789907 114790058 -167403606 + L1PB4 LINE L1 6000 6153 -3 318 315 0 0 chr1 114790172 114790261 -167403403 - MIR3 SINE MIR -6 202 114 554 289 34 31 chr1 114790271 114790609 -167403055 - LTR16A LTR ERVL -13 437 15 725 235 91 89 chr1 114790646 114791041 -167402623 + MSTD LTR MaLR 1 396 0 1323 206 33 95 chr1 114791041 114791464 -167402200 + MLT1A1-int LTR MaLR 1 397 -1338 1284 173 87 11 chr1 114791445 114791711 -167401953 + MLT1A1-int LTR MaLR 1450 1735 0 * 786 197 194 39 chr1 114791711 114792027 -167401637 + MLT1A1 LTR MaLR 1 423 -5 237 176 59 29 chr1 114794330 114794432 -167399232 + (TTATA)n Simple_repeat Simple_repeat 2 106 0 506 88 100 0 chr1 114794432 114794592 -167399072 + (TA)n Simple_repeat Simple_repeat 1 176 0 251 145 60 36 chr1 114794595 114794678 -167398986 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 182 255 20 0 chr1 114794681 114794732 -167398932 + L2 LINE L2 3262 3313 0 22 0 0 0 chr1 114794817 114794839 -167398825 + AT_rich Low_complexity Low_complexity 1 22 0 358 75 30 0 chr1 114795104 114795171 -167398493 + (TA)n Simple_repeat Simple_repeat 1 69 0 373 250 96 32 chr1 114795753 114795909 -167397755 - L2 LINE L2 0 3313 3148 329 187 21 59 chr1 114795909 114796096 -167397568 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 252 167 0 0 chr1 114797022 114797070 -167396594 + CT-rich Low_complexity Low_complexity 3 50 0 464 300 100 6 chr1 114797472 114797652 -167396012 - LTR16A LTR ERVL -96 354 158 339 210 49 25 chr1 114799148 114799229 -167394435 + MLT1D LTR MaLR 5 87 -418 844 227 175 59 chr1 114799279 114799667 -167393997 + MLT1D LTR MaLR 64 496 -9 474 301 87 55 chr1 114799677 114799989 -167393675 - HERV16 LTR ERVL -2295 2701 2380 27 29 0 0 chr1 114800045 114800079 -167393585 + AT_rich Low_complexity Low_complexity 1 34 0 1419 167 32 35 chr1 114800080 114800389 -167393275 - AluJo SINE Alu 0 310 3 457 211 92 0 chr1 114800430 114800576 -167393088 - L1MD3 LINE L1 -241 6103 5953 * 2845 232 63 12 chr1 114800572 114802395 -167391269 - L1MC3 LINE L1 -73 7712 5730 1438 199 27 0 chr1 114802397 114802693 -167390971 - L1MC1 LINE L1 0 6333 6030 326 50 0 0 chr1 114802693 114802733 -167390931 - Alu SINE Alu -251 48 9 1002 222 82 47 chr1 114802741 114803161 -167390503 - L1MC3 LINE L1 -1891 4255 3786 1649 213 65 50 chr1 114803167 114803534 -167390130 - L1MC1 LINE L1 -745 5401 5041 207 0 0 0 chr1 114803534 114803557 -167390107 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2005 140 0 0 chr1 114803561 114803853 -167389811 - AluSq SINE Alu -21 292 1 1649 213 65 50 chr1 114803853 114804118 -167389546 - L1MC1 LINE L1 -806 5340 5080 745 315 28 0 chr1 114804265 114804478 -167389186 + MIR SINE MIR 43 261 -1 206 269 26 0 chr1 114804480 114804558 -167389106 + (TTA)n Simple_repeat Simple_repeat 2 81 0 200 300 108 83 chr1 114805128 114805405 -167388259 - L2 LINE L2 -8 3305 3022 347 98 16 0 chr1 114805846 114805907 -167387757 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 2110 195 37 51 chr1 114806246 114806760 -167386904 - MER67D LTR ERV1 -7 507 1 196 402 41 0 chr1 114807459 114807556 -167386108 + L2 LINE L2 3139 3239 -33 24 53 0 0 chr1 114809615 114809653 -167384011 + AT_rich Low_complexity Low_complexity 1 38 0 186 361 48 0 chr1 114811373 114811456 -167382208 + L2 LINE L2 3186 3272 0 24 53 0 0 chr1 114811459 114811497 -167382167 + AT_rich Low_complexity Low_complexity 1 38 0 205 186 0 0 chr1 114812276 114812319 -167381345 + A-rich Low_complexity Low_complexity 1 43 0 1907 158 3 3 chr1 114813582 114813880 -167379784 - AluJb SINE Alu -14 298 1 1252 169 24 68 chr1 114814974 114815269 -167378395 + MER61C LTR ERV1 1 282 -152 565 103 13 0 chr1 114815271 114815349 -167378315 + MER61D LTR ERV1 423 501 0 1757 194 61 3 chr1 114815484 114815829 -167377835 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr1 114818629 114818650 -167375014 + AT_rich Low_complexity Low_complexity 1 21 0 1977 143 110 18 chr1 114820296 114820688 -167372976 - MSTA LTR MaLR 0 428 1 4202 166 21 3 chr1 114820693 114821421 -167372243 - MSTA-int LTR MaLR -5 1646 906 287 292 0 0 chr1 114821440 114821512 -167372152 + L1ME3A LINE L1 5601 5672 -498 212 163 0 0 chr1 114821528 114821571 -167372093 + (TG)n Simple_repeat Simple_repeat 1 43 0 4582 212 12 5 chr1 114821571 114822461 -167371203 + MER54A LTR ERVL 4 900 -1 1044 267 110 9 chr1 114822463 114822882 -167370782 + L1ME3A LINE L1 5660 6120 -50 25 51 0 0 chr1 114822883 114822922 -167370742 + AT_rich Low_complexity Low_complexity 1 39 0 284 314 91 33 chr1 114822932 114823174 -167370490 + L1MEd LINE L1 997 1252 -4867 244 296 151 27 chr1 114823375 114823746 -167369918 + L1MEd LINE L1 2105 2521 -3608 343 284 73 25 chr1 114823856 114824060 -167369604 + L1MEd LINE L1 2653 2866 -3263 410 152 8 45 chr1 114824331 114824463 -167369201 + (TA)n Simple_repeat Simple_repeat 1 127 0 186 71 0 0 chr1 114824520 114824548 -167369116 + (TA)n Simple_repeat Simple_repeat 1 28 0 480 306 27 30 chr1 114824647 114824948 -167368716 + L1MEd LINE L1 3897 4196 -1933 1254 141 19 10 chr1 114825008 114825214 -167368450 - AluJo SINE Alu -21 291 84 13248 179 31 27 chr1 114825502 114827950 -167365714 - L1PB1 LINE L1 0 6867 4431 192 97 0 0 chr1 114827950 114827981 -167365683 + (TTG)n Simple_repeat Simple_repeat 2 32 0 13248 179 31 27 chr1 114827981 114831595 -167362069 - L1PB1 LINE L1 -2436 4431 636 813 125 49 0 chr1 114831597 114831741 -167361923 - L1PB1 LINE L1 -6663 200 50 9809 224 50 34 chr1 114833917 114834561 -167359103 + L1MC1 LINE L1 1254 1886 -4516 300 70 0 0 chr1 114834561 114834604 -167359060 + (TA)n Simple_repeat Simple_repeat 2 44 0 9809 224 50 34 chr1 114834604 114834623 -167359041 + L1MC1 LINE L1 1886 1903 -4499 2378 162 9 21 chr1 114834623 114835055 -167358609 + MSTA LTR MaLR 1 427 -1 9809 224 50 34 chr1 114835055 114839552 -167354112 + L1MC1 LINE L1 1903 6394 -8 523 267 0 0 chr1 114841508 114841624 -167352040 + AluJb SINE Alu 182 297 -15 387 0 0 0 chr1 114841665 114841708 -167351956 + (TTA)n Simple_repeat Simple_repeat 3 45 0 2138 31 4 0 chr1 114841708 114841966 -167351698 - L1PA4 LINE L1 -18 6137 5879 396 306 38 6 chr1 114842408 114842568 -167351096 + LTR33A LTR ERVL 61 225 -298 245 330 23 11 chr1 114842773 114842861 -167350803 - L2 LINE L2 0 3313 3225 1940 193 36 36 chr1 114842971 114843524 -167350140 + MLT2A2 LTR ERVL 1 554 0 440 312 135 41 chr1 114843535 114843962 -167349702 - L2 LINE L2 -157 3156 2674 2084 319 118 26 chr1 114843967 114844050 -167349614 - L2 LINE L2 -1521 1793 1719 2731 13 0 0 chr1 114844050 114844353 -167349311 - AluY SINE Alu -8 303 1 2084 319 118 26 chr1 114844353 114845521 -167348143 - L2 LINE L2 -1595 1719 426 21 36 0 0 chr1 114845718 114845746 -167347918 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 114845870 114845894 -167347770 + AT_rich Low_complexity Low_complexity 1 24 0 347 301 86 21 chr1 114847428 114847614 -167346050 + L1MC4a LINE L1 5762 5959 -1849 24 0 0 0 chr1 114847770 114847794 -167345870 + AT_rich Low_complexity Low_complexity 1 24 0 191 213 188 25 chr1 114848599 114848679 -167344985 + MIR SINE MIR 38 130 -132 248 253 147 0 chr1 114848679 114848774 -167344890 + MIR SINE MIR 79 187 -75 2317 45 7 7 chr1 114848815 114849107 -167344557 + AluY SINE Alu 1 292 -19 34 42 0 0 chr1 114849917 114849965 -167343699 + AT_rich Low_complexity Low_complexity 1 48 0 2769 10 0 0 chr1 114850276 114850582 -167343082 + AluYb8 SINE Alu 1 306 -12 2134 0 0 0 chr1 114850972 114851207 -167342457 - L1P1 LINE L1 -464 5691 5457 * 3921 9 0 0 chr1 114851204 114851648 -167342016 + L1HS LINE L1 5709 6152 -3 32 43 0 0 chr1 114851648 114851694 -167341970 + AT_rich Low_complexity Low_complexity 1 46 0 334 213 25 0 chr1 114852210 114852290 -167341374 + MER53 DNA DNA 2 83 -106 458 309 55 31 chr1 114852439 114852695 -167340969 - LTR16C LTR ERVL -2 489 228 1008 233 138 54 chr1 114853398 114853862 -167339802 - MLT1D LTR MaLR -2 503 1 3790 156 80 39 chr1 114854130 114855505 -167338159 - LTR12 LTR ERV1 -23 1683 22 324 231 66 102 chr1 114857119 114857452 -167336212 + L1ME3A LINE L1 4259 4579 -1567 251 184 44 18 chr1 114857600 114857714 -167335950 + (TA)n Simple_repeat Simple_repeat 1 117 0 789 299 60 45 chr1 114857786 114857983 -167335681 + L1ME3A LINE L1 4752 4944 -1226 369 0 0 0 chr1 114857983 114858024 -167335640 + (CA)n Simple_repeat Simple_repeat 2 42 0 789 299 60 45 chr1 114858024 114858759 -167334905 + L1ME3A LINE L1 4944 5702 -468 849 253 100 20 chr1 114858764 114859065 -167334599 + L1ME3A LINE L1 5823 6147 -23 236 344 0 22 chr1 114859957 114860047 -167333617 - L2 LINE L2 0 3272 3185 631 253 19 61 chr1 114860171 114860397 -167333267 - MER20 DNA MER1_type -1 218 1 317 331 16 0 chr1 114860698 114860819 -167332845 + MIR SINE MIR 85 207 -55 689 163 74 21 chr1 114861424 114861614 -167332050 - Charlie5 DNA MER1_type 0 2624 2425 183 293 24 12 chr1 114862040 114862122 -167331542 - L2 LINE L2 -311 3002 2920 1329 292 150 21 chr1 114862148 114862641 -167331023 - MLT1G1 LTR MaLR 0 595 28 2064 74 0 0 chr1 114862641 114862911 -167330753 - L1PA8 LINE L1 -18 6154 5885 1329 292 150 21 chr1 114862911 114862944 -167330720 - MLT1G1 LTR MaLR -567 28 1 337 337 0 20 chr1 114862981 114863082 -167330582 - L2 LINE L2 -8 3305 3207 805 301 96 38 chr1 114863102 114863500 -167330164 - L2 LINE L2 -443 2871 2451 766 322 65 27 chr1 114863578 114864085 -167329579 - L2 LINE L2 -239 3074 2550 806 317 23 60 chr1 114864311 114864658 -167329006 + LTR16A LTR ERVL 105 438 -12 1845 320 132 7 chr1 114864782 114865610 -167328054 - L2 LINE L2 -1621 1693 763 861 163 26 99 chr1 114865610 114866637 -167327027 - L1MA5 LINE L1 -141 6159 5200 850 364 42 12 chr1 114866651 114867082 -167326582 - L2 LINE L2 -2768 546 103 682 324 60 37 chr1 114867379 114867453 -167326211 - L1M4 LINE L1 -800 5346 5275 1565 197 0 33 chr1 114867453 114867753 -167325911 - AluJo SINE Alu -22 290 1 682 324 60 37 chr1 114867753 114868563 -167325101 - L1M4 LINE L1 -871 5275 4442 320 326 47 17 chr1 114868848 114869020 -167324644 + MIR SINE MIR 66 242 -20 1075 131 0 46 chr1 114869318 114869493 -167324171 + AluSg/x SINE Alu 125 291 -21 1314 278 84 24 chr1 114870639 114871221 -167322443 + MER20B DNA MER1_type 19 635 -148 303 273 45 18 chr1 114871412 114871522 -167322142 + MER5B DNA MER1_type 51 163 -15 1466 97 17 51 chr1 114871703 114871940 -167321724 + MER30 DNA MER1_type 1 229 -1 640 284 31 27 chr1 114871966 114872188 -167321476 - MER58A DNA MER1_type 0 224 2 1967 140 3 0 chr1 114872555 114872847 -167320817 + AluSx SINE Alu 1 293 -19 6792 178 41 60 chr1 114872860 114874399 -167319265 + L1MC1 LINE L1 10 1518 -4908 8233 238 70 9 chr1 114874421 114877253 -167316411 + L1MC1 LINE L1 2105 5236 -1377 378 0 0 0 chr1 114877253 114877295 -167316369 + (TA)n Simple_repeat Simple_repeat 2 43 0 8233 238 70 9 chr1 114877295 114878249 -167315415 + L1MC1 LINE L1 5236 6130 -483 748 34 0 102 chr1 114878250 114878406 -167315258 + L1PA4 LINE L1 6026 6169 0 2624 171 8 2 chr1 114878406 114878875 -167314789 + L1MC1 LINE L1 6119 6590 -23 1752 181 68 0 chr1 114879380 114879706 -167313958 + MER7A DNA MER2_type 1 346 0 609 325 50 75 chr1 114880100 114880751 -167312913 - L2 LINE L2 0 3313 2682 200 274 0 0 chr1 114881244 114881295 -167312369 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 389 307 126 52 chr1 114881317 114881802 -167311862 + LTR33 LTR ERVL 1 521 0 517 306 185 22 chr1 114882052 114882366 -167311298 + L2 LINE L2 2580 2944 -370 426 347 52 55 chr1 114882408 114882699 -167310965 + L2 LINE L2 3023 3312 -1 1957 123 41 44 chr1 114883093 114883647 -167310017 + MER51A LTR ERV1 1 634 0 21 0 0 0 chr1 114883746 114883767 -167309897 + AT_rich Low_complexity Low_complexity 1 21 0 350 208 31 39 chr1 114884122 114884252 -167309412 - L1MC4 LINE L1 0 8042 7914 194 125 0 25 chr1 114884281 114884321 -167309343 + (CA)n Simple_repeat Simple_repeat 2 40 0 7103 51 2 4 chr1 114884361 114885403 -167308261 + L1PA6 LINE L1 5115 6154 0 25 31 0 0 chr1 114885472 114885504 -167308160 + AT_rich Low_complexity Low_complexity 1 32 0 1437 12 0 0 chr1 114886268 114886433 -167307231 + L1PA4 LINE L1 5989 6153 -2 25 0 0 0 chr1 114887697 114887722 -167305942 + AT_rich Low_complexity Low_complexity 1 25 0 444 305 114 2 chr1 114887893 114888211 -167305453 - L1MEc LINE L1 -2286 3929 3561 319 252 63 21 chr1 114888216 114888359 -167305305 - L1MEc LINE L1 -3295 2920 2772 900 298 83 32 chr1 114888509 114889404 -167304260 - L1MEc LINE L1 -4329 2067 1128 7899 241 67 20 chr1 114889860 114892369 -167301295 - L1MB7 LINE L1 -19 6401 4012 857 225 82 95 chr1 114892369 114892832 -167300832 + MSTB2 LTR MaLR 1 457 0 7899 241 67 20 chr1 114892832 114892859 -167300805 - L1MB7 LINE L1 -2408 4012 3988 1453 199 7 31 chr1 114892859 114893192 -167300472 - AluJo SINE Alu 0 326 1 7899 241 67 20 chr1 114893192 114894435 -167299229 - L1MB7 LINE L1 -2432 3988 2440 2164 270 58 32 chr1 114894514 114894755 -167298909 - L1MB7 LINE L1 -4200 2184 1951 417 113 0 28 chr1 114894755 114894826 -167298838 - L1MC1 LINE L1 0 6333 6265 2164 270 58 32 chr1 114894826 114895633 -167298031 - L1MB7 LINE L1 -4433 1951 1109 314 339 90 20 chr1 114895946 114896300 -167297364 - L1MEc LINE L1 -5994 402 24 2259 88 0 3 chr1 114896453 114896749 -167296915 + AluSc SINE Alu 1 295 -14 213 353 66 38 chr1 114897021 114897330 -167296334 - L2 LINE L2 -223 3049 2703 1459 199 19 61 chr1 114899021 114899710 -167293954 + L1M2 LINE L1 4936 5614 -698 28 61 0 0 chr1 114899710 114899759 -167293905 + AT_rich Low_complexity Low_complexity 1 49 0 470 170 32 0 chr1 114899779 114899873 -167293791 + L1M2 LINE L1 5605 5701 -590 22 0 0 0 chr1 114900696 114900718 -167292946 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 114902877 114902905 -167290759 + AT_rich Low_complexity Low_complexity 1 28 0 2027 107 4 29 chr1 114903332 114903854 -167289810 + L1PA12 LINE L1 5481 6167 -1 22 35 0 0 chr1 114903890 114903919 -167289745 + AT_rich Low_complexity Low_complexity 1 29 0 2423 143 52 0 chr1 114904350 114904755 -167288909 - MSTA LTR MaLR 0 428 3 12348 190 26 14 chr1 114904867 114906697 -167286967 + L1MA1 LINE L1 1130 2936 -4629 1783 123 6 103 chr1 114906697 114907038 -167286626 + AluSq SINE Alu 1 308 -5 12348 190 26 14 chr1 114907038 114909654 -167284010 + L1MA1 LINE L1 2936 5802 -1763 4550 87 8 69 chr1 114909649 114910109 -167283555 - L1P3 LINE L1 -438 5734 5248 * 2964 72 3 0 chr1 114910109 114910496 -167283168 - L1PA7 LINE L1 -14 6140 5753 4550 87 8 69 chr1 114910496 114911246 -167282418 - L1P3 LINE L1 -924 5248 4607 2849 95 3 0 chr1 114911247 114911637 -167282027 + L1PA7 LINE L1 5753 6143 -11 627 202 36 24 chr1 114912513 114912681 -167280983 + L1MA1 LINE L1 5788 5957 -1608 399 79 53 0 chr1 114912681 114912757 -167280907 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 7628 174 15 10 chr1 114912760 114915072 -167278592 - L1PA13 LINE L1 -8 6155 3835 1433 127 166 36 chr1 114915072 114915404 -167278260 + THE1C LTR MaLR 1 375 0 8829 144 40 12 chr1 114915404 114916950 -167276714 + THE1C-int LTR MaLR 1 1579 -1 1532 179 66 36 chr1 114916950 114917314 -167276350 + THE1C LTR MaLR 1 375 0 5181 213 23 13 chr1 114917317 114918480 -167275184 - L1PA13 LINE L1 -2310 3836 2659 1667 172 175 8 chr1 114918480 114918846 -167274818 + MSTA LTR MaLR 1 427 -1 5181 213 23 13 chr1 114918846 114918877 -167274787 - L1PA13 LINE L1 -3487 2659 2630 * 6050 175 14 3 chr1 114918856 114920628 -167273036 + L1MA1 LINE L1 5928 7721 0 1224 199 37 51 chr1 114920653 114920974 -167272690 + MSTC LTR MaLR 59 428 0 361 148 0 0 chr1 114920974 114921035 -167272629 + L1MC3 LINE L1 7453 7513 -272 333 269 10 0 chr1 114921036 114921140 -167272524 + L1MC3 LINE L1 7681 7785 0 317 327 54 12 chr1 114922526 114922694 -167270970 + HAL1 LINE L1 1510 1684 -823 1731 209 71 31 chr1 114923073 114923687 -167269977 + L1MC1 LINE L1 22 772 -5654 5353 167 102 39 chr1 114923696 114924794 -167268870 + L1MC1 LINE L1 851 1878 -4548 2116 181 7 40 chr1 114924794 114925242 -167268422 + Tigger2a DNA MER2_type 2 434 0 300 27 0 0 chr1 114925250 114925287 -167268377 + (TG)n Simple_repeat Simple_repeat 2 38 0 5353 167 102 39 chr1 114925287 114925505 -167268159 + L1MC1 LINE L1 1884 2260 -4166 1341 235 28 36 chr1 114925505 114925863 -167267801 - MLT1A1 LTR MaLR -10 355 1 3060 257 48 20 chr1 114925863 114927219 -167266445 + L1MC1 LINE L1 2256 3692 -2734 829 218 28 28 chr1 114927222 114927433 -167266231 - MLT1A2 LTR MaLR 0 374 164 1485 77 0 10 chr1 114927436 114927644 -167266020 - L1PA4 LINE L1 -2 6153 5948 1661 225 26 0 chr1 114927744 114928161 -167265503 + L1 LINE L1 3225 3652 -2494 11733 31 1 1 chr1 114928177 114930165 -167263499 - L1PA4 LINE L1 -180 5975 3988 198 0 0 0 chr1 114930178 114930200 -167263464 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 579 241 35 21 chr1 114930200 114930345 -167263319 - MLT1A2 LTR MaLR -227 147 1 3183 246 32 24 chr1 114930358 114931265 -167262399 + L1MC1 LINE L1 3707 4624 -1802 985 246 90 42 chr1 114931265 114931296 -167262368 + MLT1A2 LTR MaLR 1 29 -345 1473 224 20 0 chr1 114931296 114931590 -167262074 + AluJb SINE Alu 1 300 -12 985 246 90 42 chr1 114931590 114931915 -167261749 + MLT1A2 LTR MaLR 29 374 0 3183 246 32 24 chr1 114931915 114932043 -167261621 + L1MC1 LINE L1 4624 4750 -1676 681 244 78 33 chr1 114932063 114932370 -167261294 + L1MC1 LINE L1 4834 5154 -1272 10578 61 6 12 chr1 114932370 114933766 -167259898 - L1P LINE L1 -4739 1407 20 4374 34 6 4 chr1 114933766 114934304 -167259360 + L1PA4 LINE L1 5614 6152 -3 551 222 23 34 chr1 114934313 114934354 -167259310 + L1MC1 LINE L1 5144 5184 -1242 3357 134 73 0 chr1 114934354 114934915 -167258749 + LTR43 LTR ERV1 1 602 0 551 222 23 34 chr1 114934915 114935049 -167258615 + L1MC1 LINE L1 5184 5317 -1109 * 3604 7 0 0 chr1 114935047 114935452 -167258212 - L1PA2 LINE L1 -170 5985 5581 4920 166 54 41 chr1 114935482 114936081 -167257583 + L1MC1 LINE L1 5289 5879 -734 233 179 0 0 chr1 114936081 114936120 -167257544 + tRNA-Glu-GAA tRNA tRNA 3 41 -34 4920 166 54 41 chr1 114936120 114936782 -167256882 + L1MC1 LINE L1 5879 6607 -6 244 253 30 20 chr1 114937064 114937163 -167256501 + HAL1 LINE L1 2244 2343 -164 240 163 0 23 chr1 114937904 114937947 -167255717 + MER94 DNA DNA 6 47 -87 261 0 0 0 chr1 114938969 114938998 -167254666 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 297 79 36 chr1 114939248 114939413 -167254251 + L2 LINE L2 2694 2865 -449 1452 254 91 106 chr1 114940128 114940908 -167252756 + L2 LINE L2 1985 2752 -562 475 218 15 68 chr1 114942053 114942186 -167251478 - MER58B DNA MER1_type -16 325 200 1707 285 39 74 chr1 114942227 114943278 -167250386 + L1MEc LINE L1 113 1126 -5270 10952 68 17 5 chr1 114943386 114943559 -167250105 - L1PA8 LINE L1 -165 6007 5838 1969 107 4 0 chr1 114943559 114943864 -167249800 - AluSp SINE Alu 0 325 20 10952 68 17 5 chr1 114943864 114945748 -167247916 - L1PA8 LINE L1 -334 5838 3920 6448 40 5 7 chr1 114945748 114946542 -167247122 + L1PA4 LINE L1 5344 6148 -7 1417 117 22 13 chr1 114946576 114946806 -167246858 + L1P5 LINE L1 5483 5714 -437 762 303 80 88 chr1 114946907 114947631 -167246033 - L2 LINE L2 -1 3312 2591 225 290 0 0 chr1 114947639 114947701 -167245963 - MIR SINE MIR 0 262 201 22 56 0 0 chr1 114947774 114947810 -167245854 + AT_rich Low_complexity Low_complexity 1 36 0 43820 42 4 1 chr1 114947810 114953939 -167239725 - L1PA4 LINE L1 -3 6152 3 240 346 48 53 chr1 114954568 114954756 -167238908 - LTR33A LTR ERVL -335 188 2 9311 58 5 0 chr1 114954914 114956964 -167236700 + L1PA6 LINE L1 4132 6153 -1 304 281 178 22 chr1 114957209 114957394 -167236270 + L1MB1 LINE L1 4479 4692 -1454 727 191 7 7 chr1 114957397 114957549 -167236115 + L1MB1 LINE L1 4908 5059 -1087 393 273 118 50 chr1 114957715 114957876 -167235788 + MER5B DNA MER1_type 1 172 -6 218 237 13 13 chr1 114958837 114958913 -167234751 + (TAA)n Simple_repeat Simple_repeat 1 76 0 1655 232 20 23 chr1 114959809 114960206 -167233458 + L1M3e LINE L1 9 404 -6626 25 31 0 0 chr1 114960233 114960265 -167233399 + AT_rich Low_complexity Low_complexity 1 32 0 2745 178 17 11 chr1 114960274 114960814 -167232850 + L1MB1 LINE L1 5568 6110 -58 213 39 0 0 chr1 114960983 114961009 -167232655 + (CA)n Simple_repeat Simple_repeat 2 27 0 2330 263 20 46 chr1 114961013 114962100 -167231564 + L1MEc LINE L1 2141 3157 -3058 1199 122 11 0 chr1 114962100 114962289 -167231375 + AluSg/x SINE Alu 121 311 -1 471 266 55 27 chr1 114962359 114962652 -167231012 + L1MEc LINE L1 3195 3495 -2720 567 260 35 23 chr1 114962665 114962838 -167230826 - MLT1E LTR MaLR -3 590 416 446 313 73 46 chr1 114962910 114963281 -167230383 + L1MEc LINE L1 4137 4517 -1698 33 0 0 0 chr1 114964398 114964431 -167229233 + AT_rich Low_complexity Low_complexity 1 33 0 544 309 15 45 chr1 114964594 114964859 -167228805 - L1ME1 LINE L1 -5 6161 5905 613 348 42 17 chr1 114964936 114965172 -167228492 - L2 LINE L2 -253 3060 2819 2470 176 4 29 chr1 114965180 114965658 -167228006 - MLT1C LTR MaLR -1 466 1 1110 323 38 6 chr1 114965687 114966315 -167227349 + L1ME2 LINE L1 3551 4198 -1948 * 1347 267 39 19 chr1 114966310 114966793 -167226871 + L1ME2 LINE L1 5662 6154 -10 297 51 0 0 chr1 114967633 114967672 -167225992 + (CA)n Simple_repeat Simple_repeat 2 40 0 882 161 6 77 chr1 114969827 114969995 -167223669 + FAM SINE Alu 10 165 -20 1657 151 37 4 chr1 114970204 114970527 -167223137 + AluSx SINE Alu 2 333 0 934 258 90 29 chr1 114971159 114971496 -167222168 - Charlie2 DNA MER1_type -282 2580 2198 192 77 0 0 chr1 114971496 114971522 -167222142 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 934 258 90 29 chr1 114971522 114971708 -167221956 - Charlie2 DNA MER1_type -664 2198 2025 333 263 69 25 chr1 114971754 114971914 -167221750 - Charlie2 DNA MER1_type -928 1934 1768 372 121 0 0 chr1 114971950 114972008 -167221656 - HY3 scRNA scRNA -5 96 39 256 313 72 36 chr1 114972331 114972497 -167221167 - Charlie2b DNA MER1_type -2103 679 508 * 569 219 0 48 chr1 114972494 114972640 -167221024 - Charlie2b DNA MER1_type -2468 314 176 2422 156 22 39 chr1 114972823 114973360 -167220304 - L1MB4 LINE L1 0 6180 5653 843 273 82 37 chr1 114974528 114974906 -167218758 + L1MEc LINE L1 34 428 -5968 1822 181 106 0 chr1 114974973 114975377 -167218287 + L1 LINE L1 3712 4158 -1988 7200 35 0 2 chr1 114975378 114976248 -167217416 - L1PA3 LINE L1 -1692 4454 3587 7992 26 0 0 chr1 114976248 114977965 -167215699 + L1PA3 LINE L1 4440 6155 0 3684 181 56 53 chr1 114977971 114978141 -167215523 + L1 LINE L1 4151 4319 -1827 4199 205 45 15 chr1 114978141 114979016 -167214648 - MER54A LTR ERVL 0 901 1 3684 181 56 53 chr1 114979016 114979817 -167213847 + L1 LINE L1 4319 5124 -1022 1744 170 28 54 chr1 114979818 114980207 -167213457 + MER44D DNA MER2_type 172 605 0 479 205 74 0 chr1 114981751 114981873 -167211791 - MER110A LTR ERV1 -337 131 1 387 0 0 0 chr1 114982089 114982132 -167211532 + (TG)n Simple_repeat Simple_repeat 2 44 0 237 302 180 6 chr1 114982325 114982438 -167211226 + MIR SINE MIR 60 152 -110 970 186 19 0 chr1 114982438 114982599 -167211065 + FAM SINE Alu 2 165 -10 237 302 180 6 chr1 114982599 114982657 -167211007 + MIR SINE MIR 152 261 -1 24 32 0 0 chr1 114982657 114982688 -167210976 + AT_rich Low_complexity Low_complexity 1 31 0 240 288 0 0 chr1 114983158 114983231 -167210433 + (TAA)n Simple_repeat Simple_repeat 1 73 0 1096 225 52 16 chr1 114983487 114983852 -167209812 - LTR37A LTR ERV1 -3 423 46 962 266 57 95 chr1 114984004 114984811 -167208853 - MER31-int LTR ERV1 -836 4100 3325 236 306 0 16 chr1 114984917 114984979 -167208685 - MER5B DNA MER1_type -97 81 21 25 51 0 0 chr1 114985020 114985059 -167208605 + AT_rich Low_complexity Low_complexity 1 39 0 2122 124 33 36 chr1 114985059 114985421 -167208243 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr1 114985949 114985978 -167207686 + AT_rich Low_complexity Low_complexity 1 29 0 1157 235 78 59 chr1 114986293 114986731 -167206933 - MER50 LTR ERV1 0 734 289 464 236 107 21 chr1 114986829 114986969 -167206695 - MER50 LTR ERV1 -566 168 17 498 259 18 18 chr1 114986984 114987154 -167206510 + Charlie1 DNA MER1_type 2564 2733 -28 577 214 104 6 chr1 114987161 114987343 -167206321 - LTR37A LTR ERV1 -177 249 50 25 31 0 0 chr1 114988120 114988152 -167205512 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 114988787 114988810 -167204854 + AT_rich Low_complexity Low_complexity 1 23 0 866 111 49 0 chr1 114989469 114989613 -167204051 + L1PA8 LINE L1 2059 2209 -3937 3383 108 0 0 chr1 114989617 114990115 -167203549 + L1PA8 LINE L1 2344 2841 -3305 264 143 0 0 chr1 114990115 114990183 -167203481 + AluSc SINE Alu 237 304 0 16514 107 5 20 chr1 114990186 114992655 -167201009 + L1PA8 LINE L1 2827 5291 -881 2264 78 3 0 chr1 114992655 114992965 -167200699 + AluY SINE Alu 5 315 0 16514 107 5 20 chr1 114992965 114993828 -167199836 + L1PA8 LINE L1 5291 6166 -6 1276 233 99 31 chr1 114994001 114994176 -167199488 - MLT1F1 LTR MaLR -2 540 378 1744 178 141 24 chr1 114994176 114994587 -167199077 - MLT1C LTR MaLR -4 463 5 1276 233 99 31 chr1 114994587 114994918 -167198746 - MLT1F1 LTR MaLR -164 378 1 233 346 98 13 chr1 114996080 114996233 -167197431 + L1MEd LINE L1 543 708 -5411 180 0 0 0 chr1 114997058 114997078 -167196586 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 114997172 114997200 -167196464 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr1 114998325 114998368 -167195296 + AT_rich Low_complexity Low_complexity 1 43 0 403 228 79 0 chr1 114999135 114999236 -167194428 - Tigger3(Golem) DNA MER2_type -2 3027 2919 276 275 0 14 chr1 114999359 114999428 -167194236 - Tigger3(Golem) DNA MER2_type -2949 80 13 1471 178 119 26 chr1 115000815 115001158 -167192506 + THE1C LTR MaLR 1 375 0 9000 148 17 45 chr1 115001160 115002777 -167190887 + THE1C-int LTR MaLR 3 1574 -6 1818 141 54 38 chr1 115002782 115003151 -167190513 + THE1C LTR MaLR 1 375 0 236 77 26 0 chr1 115003338 115003377 -167190287 + (TTTTG)n Simple_repeat Simple_repeat 5 44 0 331 346 18 98 chr1 115003385 115003756 -167189908 - L2 LINE L2 -251 3062 2721 1329 300 148 75 chr1 115003801 115004946 -167188718 - L2 LINE L2 -1406 1908 657 3584 157 36 13 chr1 115004946 115005640 -167188024 + MER67C LTR ERV1 1 710 0 1329 300 148 75 chr1 115005640 115005779 -167187885 - L2 LINE L2 -2657 657 530 917 269 133 65 chr1 115006609 115007074 -167186590 - MLT1F1 LTR MaLR -8 559 63 34 0 0 0 chr1 115007389 115007423 -167186241 + AT_rich Low_complexity Low_complexity 1 34 0 224 261 43 43 chr1 115007947 115008039 -167185625 + MIR SINE MIR 148 239 -23 1163 201 52 34 chr1 115008240 115008508 -167185156 + AluJo SINE Alu 14 286 -26 593 119 10 0 chr1 115008515 115008616 -167185048 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 434 294 129 6 chr1 115008617 115008967 -167184697 - L1MCa LINE L1 -2563 3863 3471 256 24 49 0 chr1 115008975 115009016 -167184648 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 841 117 8 0 chr1 115009016 115009136 -167184528 - AluSq/x SINE Alu -192 121 1 2346 230 68 29 chr1 115009136 115009338 -167184326 - L1MCa LINE L1 -2950 3476 3283 2048 78 14 7 chr1 115009338 115009508 -167184156 - AluY SINE Alu -11 300 126 531 0 0 0 chr1 115009508 115009567 -167184097 + (TG)n Simple_repeat Simple_repeat 2 60 0 2048 78 14 7 chr1 115009567 115009677 -167183987 - AluY SINE Alu -185 126 18 2346 230 68 29 chr1 115009677 115010902 -167182762 - L1MCa LINE L1 -3143 3283 1994 3238 234 96 22 chr1 115010929 115012070 -167181594 + L1MD2 LINE L1 5098 6339 -20 436 348 147 14 chr1 115014680 115015048 -167178616 + L2 LINE L2 1859 2275 -1039 378 266 26 9 chr1 115015080 115015193 -167178471 + MIR SINE MIR 1 115 -147 234 324 19 19 chr1 115015221 115015329 -167178335 + MIR SINE MIR 97 204 -58 192 228 0 0 chr1 115015359 115015416 -167178248 + (TA)n Simple_repeat Simple_repeat 2 58 0 283 219 47 0 chr1 115015422 115015486 -167178178 + MIR SINE MIR 196 262 0 1368 201 28 90 chr1 115016133 115016532 -167177132 - MLT1A2 LTR MaLR 0 374 1 203 338 166 19 chr1 115017276 115017433 -167176231 + L2 LINE L2 3121 3300 -13 771 269 41 0 chr1 115018279 115018521 -167175143 + L1ME3A LINE L1 5851 6102 -68 2148 100 17 7 chr1 115018531 115018830 -167174834 + AluSx SINE Alu 2 303 -9 372 317 28 14 chr1 115018869 115019011 -167174653 - MIR SINE MIR -105 157 14 23 97 0 0 chr1 115019241 115019313 -167174351 + AT_rich Low_complexity Low_complexity 1 72 0 8728 36 0 0 chr1 115019327 115020391 -167173273 + L1P LINE L1 3124 4187 -1959 22 56 0 0 chr1 115020503 115020539 -167173125 + AT_rich Low_complexity Low_complexity 1 36 0 2542 101 17 12 chr1 115021217 115021625 -167172039 + L1MA4 LINE L1 5885 6294 -6 274 308 224 0 chr1 115021734 115021841 -167171823 + MER91A DNA MER1_type 12 142 -54 622 219 0 16 chr1 115022216 115022344 -167171320 + FLAM_A SINE Alu 1 126 -7 26 50 0 0 chr1 115022389 115022429 -167171235 + AT_rich Low_complexity Low_complexity 1 40 0 271 346 69 31 chr1 115022535 115022665 -167170999 - L2 LINE L2 -1 3271 3137 343 331 204 0 chr1 115022690 115022862 -167170802 - MIR SINE MIR -2 260 54 217 356 28 44 chr1 115022917 115023097 -167170567 - L2 LINE L2 -155 3158 2982 1564 230 148 41 chr1 115023589 115023775 -167169889 + L1MB8 LINE L1 3921 4086 -2060 1743 159 17 3 chr1 115023775 115024070 -167169594 - AluSx SINE Alu -13 299 1 1564 230 148 41 chr1 115024070 115024708 -167168956 + L1MB8 LINE L1 4086 4833 -1313 406 201 95 85 chr1 115024719 115024908 -167168756 + L1MB8 LINE L1 4977 5167 -979 2357 209 43 60 chr1 115024913 115025146 -167168518 + L1MB8 LINE L1 5449 5685 -493 899 126 7 0 chr1 115025146 115025288 -167168376 + L1PB1 LINE L1 6003 6146 -5 2357 209 43 60 chr1 115025288 115025574 -167168090 + L1MB8 LINE L1 5685 5956 -222 1745 201 3 0 chr1 115025574 115025878 -167167786 + AluJb SINE Alu 1 305 -7 2357 209 43 60 chr1 115025878 115026051 -167167613 + L1MB8 LINE L1 5956 6130 -48 233 191 32 0 chr1 115026074 115026137 -167167527 + (TA)n Simple_repeat Simple_repeat 1 65 0 22 0 0 0 chr1 115026149 115026171 -167167493 + AT_rich Low_complexity Low_complexity 1 22 0 268 296 10 0 chr1 115026333 115026431 -167167233 + L1ME LINE L1 58 156 -5914 198 0 0 0 chr1 115026636 115026658 -167167006 + (A)n Simple_repeat Simple_repeat 1 22 0 1508 282 71 47 chr1 115026784 115027129 -167166535 + L1ME LINE L1 178 513 -5567 2155 72 65 0 chr1 115027129 115027421 -167166243 + AluY SINE Alu 1 311 0 1508 282 71 47 chr1 115027421 115029270 -167164394 + L1ME LINE L1 513 2876 -3204 187 278 14 42 chr1 115030139 115030211 -167163453 + MIR SINE MIR 97 166 -96 254 367 58 16 chr1 115030353 115030541 -167163123 - L2 LINE L2 -13 3300 3105 1654 330 99 52 chr1 115030627 115031701 -167161963 - L2 LINE L2 -337 2977 1854 243 192 19 19 chr1 115032081 115032133 -167161531 + MLT1L LTR MaLR 439 490 -125 23 0 0 0 chr1 115032457 115032480 -167161184 + AT_rich Low_complexity Low_complexity 1 23 0 569 344 75 23 chr1 115033121 115033470 -167160194 + HERV16 LTR ERVL 1905 2271 -2725 450 373 26 19 chr1 115033740 115034011 -167159653 + HERV16 LTR ERVL 2655 2927 -2069 1854 161 11 0 chr1 115034016 115034295 -167159369 - AluSx SINE Alu -28 284 3 774 146 0 0 chr1 115034301 115034424 -167159240 - AluSq/x SINE Alu -180 133 11 574 271 53 16 chr1 115035157 115035345 -167158319 - L1ME2 LINE L1 -9 6155 5961 600 265 20 5 chr1 115035356 115035556 -167158108 - L1ME2 LINE L1 -256 5908 5706 507 246 143 84 chr1 115035543 115036010 -167157654 + L1M4 LINE L1 4356 4794 -1352 * 1293 0 0 0 chr1 115036010 115036154 -167157510 - L1PA2 LINE L1 -4 6151 6008 507 246 143 84 chr1 115036154 115036490 -167157174 + L1M4 LINE L1 4794 5220 -926 2175 156 55 26 chr1 115036490 115036906 -167156758 - MSTA LTR MaLR 0 428 1 507 246 143 84 chr1 115036906 115036998 -167156666 + L1M4 LINE L1 5220 5305 -841 325 278 74 28 chr1 115037006 115037256 -167156408 - L1ME2 LINE L1 -749 5397 5154 452 244 77 19 chr1 115037688 115037816 -167155848 + MLT1B LTR MaLR 1 137 -253 1631 155 28 160 chr1 115037816 115038273 -167155391 - MSTB1 LTR MaLR 0 432 36 310 244 0 0 chr1 115038369 115038451 -167155213 + MLT1B LTR MaLR 187 268 -122 288 130 0 0 chr1 115038493 115038539 -167155125 - MADE1 DNA Mariner -34 46 1 3097 112 41 0 chr1 115038588 115039186 -167154478 - L1PA8A LINE L1 -633 5498 4884 304 333 61 0 chr1 115039186 115039318 -167154346 + L1MEc LINE L1 1360 1499 -4897 468 314 102 39 chr1 115039547 115040056 -167153608 + L1MEc LINE L1 1858 2398 -3998 2047 119 0 0 chr1 115040276 115040585 -167153079 - AluSx SINE Alu 0 314 6 184 208 19 57 chr1 115040618 115040671 -167152993 - L2 LINE L2 -1890 1424 1374 273 344 94 17 chr1 115040671 115040851 -167152813 - L2 LINE L2 -2139 1175 982 21 0 0 0 chr1 115040972 115040993 -167152671 + AT_rich Low_complexity Low_complexity 1 21 0 319 328 59 32 chr1 115041706 115041892 -167151772 + MIR SINE MIR 51 241 -21 7392 146 21 30 chr1 115042235 115043547 -167150117 + Tigger1 DNA MER2_type 1 1301 -1117 704 43 0 11 chr1 115044889 115044982 -167148682 + (GAA)n Simple_repeat Simple_repeat 3 94 0 240 119 51 0 chr1 115044989 115045048 -167148616 + G-rich Low_complexity Low_complexity 2 63 0 182 190 120 70 chr1 115045167 115045267 -167148397 + MIR SINE MIR 92 196 -66 4958 138 10 1 chr1 115045458 115046243 -167147421 + Tigger1 DNA MER2_type 1295 2086 -332 711 195 0 0 chr1 115046244 115046372 -167147292 + AluSg/x SINE Alu 168 295 -15 1880 174 6 3 chr1 115046373 115046694 -167146970 + Tigger1 DNA MER2_type 2091 2412 -6 407 271 66 12 chr1 115046723 115046889 -167146775 - L1ME1 LINE L1 -23 6143 5969 370 269 31 8 chr1 115046915 115047045 -167146619 - L1MD3 LINE L1 -15 7980 7848 312 295 47 0 chr1 115047177 115047306 -167146358 - L1MD3 LINE L1 -745 7250 7116 921 279 85 77 chr1 115047823 115048473 -167145191 - MER21B LTR ERV1 -149 714 60 5732 187 38 77 chr1 115048693 115050231 -167143433 + L1MCa LINE L1 22 1500 -4926 21 0 0 0 chr1 115050326 115050347 -167143317 + AT_rich Low_complexity Low_complexity 1 21 0 230 284 43 35 chr1 115050650 115050791 -167142873 + L1MDa LINE L1 1782 1923 -5018 946 280 62 37 chr1 115050895 115051331 -167142333 + L1MDa LINE L1 23 469 -5954 193 260 123 52 chr1 115051685 115051839 -167141825 - MIR SINE MIR -1 261 97 519 56 0 0 chr1 115052319 115052390 -167141274 + (TA)n Simple_repeat Simple_repeat 2 72 0 29 78 0 0 chr1 115054311 115054375 -167139289 + AT_rich Low_complexity Low_complexity 1 64 0 357 287 55 93 chr1 115054429 115054718 -167138946 + L1 LINE L1 3739 4016 -2130 232 293 0 13 chr1 115054755 115054830 -167138834 + L1 LINE L1 4066 4139 -2007 418 192 58 70 chr1 115055482 115055537 -167138127 + L1MDa LINE L1 3042 3096 -3845 2183 122 3 0 chr1 115055537 115055841 -167137823 + AluSp SINE Alu 2 306 -7 418 192 58 70 chr1 115055841 115055941 -167137723 + L1MDa LINE L1 3096 3195 -3746 2948 277 67 45 chr1 115055941 115056614 -167137050 + L1MDa LINE L1 3900 4557 -2384 232 191 21 0 chr1 115056614 115056661 -167137003 - MADE1 DNA Mariner 0 80 33 2948 277 67 45 chr1 115056661 115056673 -167136991 + L1MDa LINE L1 4557 4567 -2374 216 0 0 0 chr1 115056673 115056697 -167136967 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2948 277 67 45 chr1 115056697 115057705 -167135959 + L1MDa LINE L1 4567 5741 -1200 198 297 78 39 chr1 115057889 115058017 -167135647 + MIR SINE MIR 57 189 -73 25 31 0 0 chr1 115058127 115058159 -167135505 + AT_rich Low_complexity Low_complexity 1 32 0 777 144 0 38 chr1 115058883 115059015 -167134649 + FLAM_C SINE Alu 2 128 -5 7250 42 3 0 chr1 115059314 115060943 -167132721 + L1PA5 LINE L1 4519 6150 -4 21 0 0 0 chr1 115062273 115062294 -167131370 + AT_rich Low_complexity Low_complexity 1 21 0 261 339 40 57 chr1 115062580 115062704 -167130960 + MIR SINE MIR 4 125 -137 201 121 0 0 chr1 115062705 115062738 -167130926 + (T)n Simple_repeat Simple_repeat 1 33 0 424 349 37 41 chr1 115062969 115063264 -167130400 + L1M4 LINE L1 8 301 -6241 566 229 43 125 chr1 115063474 115063787 -167129877 + L1M4 LINE L1 612 868 -5674 1957 34 4 0 chr1 115063807 115064045 -167129619 - L1PA3 LINE L1 -175 5980 5742 1343 46 0 23 chr1 115064045 115064216 -167129448 + L1PA3 LINE L1 5987 6155 0 2630 249 58 62 chr1 115064247 115064353 -167129311 + L1M4 LINE L1 892 997 -5647 2224 71 0 3 chr1 115064353 115064681 -167128983 + AluY SINE Alu 1 327 0 2630 249 58 62 chr1 115064681 115064948 -167128716 + L1M4 LINE L1 997 1263 -5381 1741 182 62 14 chr1 115064948 115065306 -167128358 + THE1C LTR MaLR 1 375 0 2630 249 58 62 chr1 115065306 115066861 -167126803 + L1M4 LINE L1 1263 2836 -3808 993 249 0 9 chr1 115066861 115067090 -167126574 - MER46A DNA MER2_type -1 235 9 1155 251 35 48 chr1 115067090 115067105 -167126559 + L1M4 LINE L1 2843 2857 -3787 189 0 0 0 chr1 115067105 115067126 -167126538 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1155 251 35 48 chr1 115067126 115067649 -167126015 + L1M4 LINE L1 2857 3374 -3270 504 186 10 20 chr1 115067650 115067740 -167125924 + THE1C LTR MaLR 1 89 -339 436 111 0 0 chr1 115067740 115067803 -167125861 + LTR9 LTR ERV1 1 63 -549 6898 146 35 57 chr1 115067803 115068589 -167125075 + HUERS-P3 LTR ERV1 255 1002 -7917 2399 53 0 10 chr1 115068589 115068891 -167124773 - AluY SINE Alu -12 299 1 6898 146 35 57 chr1 115068891 115069396 -167124268 + HUERS-P3 LTR ERV1 1002 1517 -7402 16011 135 17 1 chr1 115069398 115071782 -167121882 + HUERS-P3 LTR ERV1 4234 6655 -2264 12720 155 14 7 chr1 115071775 115073790 -167119874 + HUERS-P3 LTR ERV1 6888 8917 -2 * 3658 158 43 0 chr1 115073791 115074378 -167119286 + LTR9 LTR ERV1 1 612 0 1469 174 18 14 chr1 115074378 115074659 -167119005 + THE1C LTR MaLR 94 375 0 1725 266 52 30 chr1 115074670 115075263 -167118401 + L1M4 LINE L1 3392 4009 -2635 2074 102 0 14 chr1 115075263 115075546 -167118118 + AluSg SINE Alu 18 296 -14 1725 266 52 30 chr1 115075546 115075774 -167117890 + L1M4 LINE L1 4009 4231 -2413 43265 46 2 1 chr1 115075786 115081932 -167111732 + L1PA4 LINE L1 2 6154 -1 537 234 18 47 chr1 115082062 115082233 -167111431 + L1ME3A LINE L1 5995 6160 -10 3123 169 44 62 chr1 115083731 115084520 -167109144 + L1MA7 LINE L1 5517 6291 0 1957 101 3 89 chr1 115084563 115084889 -167108775 - AluSp SINE Alu -13 300 3 32 43 0 0 chr1 115084943 115084989 -167108675 + AT_rich Low_complexity Low_complexity 1 46 0 561 333 4 22 chr1 115085076 115085307 -167108357 + L1MEc LINE L1 36 262 -6134 616 257 7 14 chr1 115085322 115085462 -167108202 - MLT1E LTR MaLR -454 139 1 722 177 48 24 chr1 115085676 115085885 -167107779 + L1ME1 LINE L1 5676 5889 -277 22 56 0 0 chr1 115086001 115086037 -167107627 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr1 115087649 115087679 -167105985 + AT_rich Low_complexity Low_complexity 1 30 0 339 240 0 13 chr1 115087700 115087775 -167105889 + MER119 DNA MER1_type 500 573 -10 823 236 14 39 chr1 115089110 115089318 -167104346 + MER58A DNA MER1_type 19 221 -3 644 273 140 36 chr1 115089769 115090275 -167103389 + MLT1F1 LTR MaLR 9 555 0 5859 38 0 1 chr1 115090992 115091696 -167101968 + L1PA5 LINE L1 5450 6152 -2 27 29 0 0 chr1 115091875 115091909 -167101755 + AT_rich Low_complexity Low_complexity 1 34 0 226 250 30 23 chr1 115091912 115092044 -167101620 + L1MC5 LINE L1 7615 7747 -214 1504 182 90 9 chr1 115092232 115092567 -167101097 - L1MA9 LINE L1 0 6312 5951 * 2008 271 72 31 chr1 115092562 115094199 -167099465 - L1 LINE L1 -3606 2776 1031 1598 267 195 14 chr1 115094182 115094771 -167098893 - L1M3c LINE L1 -4983 1158 463 * 562 277 84 13 chr1 115094775 115094930 -167098734 - L1M3c LINE L1 -5780 361 196 1800 157 17 3 chr1 115094930 115095094 -167098570 - AluSq SINE Alu -16 297 126 7284 27 7 0 chr1 115095094 115096447 -167097217 - L1PA4 LINE L1 -5 6150 4784 1800 157 17 3 chr1 115096447 115096575 -167097089 - AluSq SINE Alu -187 126 1 436 265 167 12 chr1 115096575 115096737 -167096927 - L1M3c LINE L1 -5954 187 1 257 352 139 0 chr1 115096985 115097093 -167096571 + L2 LINE L2 3143 3265 -7 548 282 96 19 chr1 115098192 115098401 -167095263 - MIR SINE MIR -31 231 7 789 272 140 17 chr1 115098551 115098959 -167094705 - MLT1C LTR MaLR 0 467 10 21 36 0 0 chr1 115099037 115099065 -167094599 + AT_rich Low_complexity Low_complexity 1 28 0 2129 193 33 5 chr1 115099402 115099832 -167093832 + L1MA4 LINE L1 5681 6122 -178 295 99 86 19 chr1 115099859 115100021 -167093643 + (TA)n Simple_repeat Simple_repeat 1 173 0 420 73 85 24 chr1 115100072 115100236 -167093428 + (TA)n Simple_repeat Simple_repeat 2 175 0 1284 222 17 38 chr1 115100319 115100612 -167093052 - L1PA15-16 LINE L1 -6116 733 447 236 172 0 16 chr1 115101132 115101196 -167092468 + (TA)n Simple_repeat Simple_repeat 1 63 0 290 295 23 69 chr1 115101556 115101773 -167091891 - L1ME LINE L1 -4981 1089 883 226 213 0 0 chr1 115101987 115102034 -167091630 - L1ME LINE L1 -5930 140 94 1208 273 135 38 chr1 115102113 115102870 -167090794 - L1ME3A LINE L1 -26 6213 5385 1308 258 74 57 chr1 115102899 115103534 -167090130 + MLT1E2 LTR MaLR 1 626 0 306 329 68 6 chr1 115103534 115103695 -167089969 - L1ME3A LINE L1 -4860 1536 1366 2361 263 54 22 chr1 115103754 115104378 -167089286 + L1ME1 LINE L1 5188 5896 -270 1678 161 89 20 chr1 115104378 115104727 -167088937 - THE1C LTR MaLR -2 373 1 2361 263 54 22 chr1 115104727 115105003 -167088661 + L1ME1 LINE L1 5896 6162 -4 22 103 0 0 chr1 115105289 115105367 -167088297 + AT_rich Low_complexity Low_complexity 1 78 0 1617 164 7 34 chr1 115105385 115105677 -167087987 + AluJb SINE Alu 1 284 -28 216 111 0 0 chr1 115105677 115105713 -167087951 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 115106272 115106295 -167087369 + AT_rich Low_complexity Low_complexity 1 23 0 590 288 98 21 chr1 115106302 115106589 -167087075 - MLT1H LTR MaLR -105 444 190 267 265 32 54 chr1 115106754 115106894 -167086770 - MLT1H LTR MaLR -271 162 42 416 327 78 14 chr1 115107048 115107265 -167086399 + MIR SINE MIR 32 262 0 647 364 107 20 chr1 115107386 115108426 -167085238 + L2 LINE L2 2144 3278 -35 602 256 90 23 chr1 115109319 115109477 -167084187 + L1M4 LINE L1 4812 4958 -1188 390 42 0 0 chr1 115109477 115109525 -167084139 + (CA)n Simple_repeat Simple_repeat 2 49 0 602 256 90 23 chr1 115109525 115109667 -167083997 + L1M4 LINE L1 4958 5132 -1014 587 226 50 39 chr1 115110059 115110240 -167083424 + L2 LINE L2 2687 2869 -445 227 333 0 0 chr1 115110289 115110343 -167083321 + L2 LINE L2 3009 3062 -251 25 0 0 0 chr1 115111725 115111750 -167081914 + AT_rich Low_complexity Low_complexity 1 25 0 2259 106 7 0 chr1 115111751 115112078 -167081586 - AluSp SINE Alu 0 329 1 231 149 30 30 chr1 115113174 115113241 -167080423 + (TA)n Simple_repeat Simple_repeat 1 67 0 252 260 10 29 chr1 115113334 115113438 -167080226 + HAL1b LINE L1 635 736 -612 2597 23 7 3 chr1 115113672 115113979 -167079685 + AluY SINE Alu 1 308 -3 27 0 0 0 chr1 115114190 115114217 -167079447 + AT_rich Low_complexity Low_complexity 1 27 0 1053 199 39 13 chr1 115114326 115114557 -167079107 - THE1C LTR MaLR 0 375 139 7004 40 0 0 chr1 115114557 115115425 -167078239 - L1PA5 LINE L1 -955 5191 4324 7255 44 6 0 chr1 115115425 115116355 -167077309 + L1PA5 LINE L1 5213 6148 -2 441 0 0 0 chr1 115116355 115116404 -167077260 + (TA)n Simple_repeat Simple_repeat 2 50 0 795 189 31 19 chr1 115116408 115116567 -167077097 - THE1C LTR MaLR -214 161 1 510 320 75 35 chr1 115116975 115117466 -167076198 + HAL1 LINE L1 94 604 -1903 218 229 16 0 chr1 115117645 115117706 -167075958 + (TA)n Simple_repeat Simple_repeat 2 63 0 27 73 0 0 chr1 115117893 115117948 -167075716 + AT_rich Low_complexity Low_complexity 1 55 0 228 303 45 0 chr1 115118022 115118088 -167075576 - MER21A LTR ERV1 -190 741 673 * 1695 257 47 24 chr1 115118076 115118610 -167075054 - MER77 LTR ERV1 -6 599 54 287 342 58 25 chr1 115118713 115118956 -167074708 + HAL1 LINE L1 1535 1785 -722 7095 217 110 39 chr1 115118973 115121355 -167072309 + L1M1 LINE L1 14 2947 -4618 218 32 32 0 chr1 115121355 115121386 -167072278 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 7095 217 110 39 chr1 115121386 115121503 -167072161 + L1M1 LINE L1 2947 3054 -4511 503 113 0 0 chr1 115121503 115121583 -167072081 + L1MA3 LINE L1 6226 6305 0 395 285 73 67 chr1 115122953 115123118 -167070546 - MLT1E LTR MaLR -221 372 207 741 181 0 0 chr1 115123118 115123273 -167070391 - L1P LINE L1 -2942 3204 3050 1823 174 112 13 chr1 115123308 115123755 -167069909 - LTR54B LTR ERV1 0 498 8 460 254 127 23 chr1 115123777 115123950 -167069714 - MLT1E LTR MaLR -402 191 1 183 80 0 0 chr1 115124025 115124050 -167069614 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr1 115125205 115125229 -167068435 + AT_rich Low_complexity Low_complexity 1 24 0 429 317 8 0 chr1 115125674 115125794 -167067870 + L1MDb LINE L1 11 131 -6278 5012 148 22 0 chr1 115125980 115126939 -167066725 + L1PA16 LINE L1 5187 6165 -1 269 89 22 0 chr1 115126941 115126986 -167066678 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 558 258 123 39 chr1 115127002 115127312 -167066352 + L1MDb LINE L1 811 1146 -5441 1116 280 29 37 chr1 115127320 115127517 -167066147 - MLT1B LTR MaLR -10 380 186 333 47 0 0 chr1 115127517 115127560 -167066104 + (TG)n Simple_repeat Simple_repeat 2 44 0 1116 280 29 37 chr1 115127560 115127744 -167065920 - MLT1B LTR MaLR -204 186 2 567 279 35 16 chr1 115127758 115128012 -167065652 + L1MDb LINE L1 1146 1404 -5183 338 149 35 26 chr1 115128050 115128164 -167065500 + (TA)n Simple_repeat Simple_repeat 1 115 0 255 238 38 0 chr1 115128172 115128252 -167065412 + L1MC4 LINE L1 6624 6706 -1336 * 257 258 22 11 chr1 115128206 115128295 -167065369 - L1MC4 LINE L1 -1339 6703 6614 324 291 26 8 chr1 115128354 115128761 -167064903 + L1MDb LINE L1 1431 1942 -4645 434 202 12 0 chr1 115128766 115128850 -167064814 + MER61E LTR ERV1 1 85 -484 228 143 179 18 chr1 115129048 115129104 -167064560 + MER51A LTR ERV1 216 280 -354 * 1115 226 80 23 chr1 115129075 115129425 -167064239 + LTR25 LTR ERV1 415 784 -10 449 216 65 20 chr1 115129534 115129687 -167063977 + L1MA10 LINE L1 6172 6331 -3 2122 120 0 0 chr1 115130178 115130485 -167063179 + AluSq SINE Alu 1 307 0 73 73 0 11 chr1 115130963 115131087 -167062577 + AT_rich Low_complexity Low_complexity 1 124 -53 5295 156 26 33 chr1 115131087 115132166 -167061498 + MER11C LTR ERVK 1 1071 0 73 73 0 11 chr1 115132166 115132220 -167061444 + AT_rich Low_complexity Low_complexity 124 177 0 750 229 33 33 chr1 115132389 115132571 -167061093 - MLT1C LTR MaLR 0 467 286 1514 261 29 90 chr1 115132571 115133170 -167060494 + LTR26 LTR ERV1 1 603 0 2177 83 0 48 chr1 115133179 115133491 -167060173 + AluY SINE Alu 1 297 -14 1027 216 80 4 chr1 115133502 115133752 -167059912 - MLT1C LTR MaLR -198 269 1 553 297 7 0 chr1 115133904 115134052 -167059612 - MIR SINE MIR -73 189 41 21 0 0 0 chr1 115135717 115135738 -167057926 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 115135831 115135854 -167057810 + (TATTG)n Simple_repeat Simple_repeat 5 27 0 21 36 0 0 chr1 115136460 115136488 -167057176 + AT_rich Low_complexity Low_complexity 1 28 0 287 359 100 6 chr1 115136658 115136828 -167056836 + MIR SINE MIR 53 238 -24 22 35 0 0 chr1 115137718 115137747 -167055917 + AT_rich Low_complexity Low_complexity 1 29 0 18021 57 4 3 chr1 115137879 115141024 -167052640 - L1PA5 LINE L1 -6 6148 3014 6304 55 2 1 chr1 115141024 115141831 -167051833 + L1PA5 LINE L1 2203 3010 -3136 1096 251 68 50 chr1 115142135 115142518 -167051146 - MLT1B LTR MaLR 0 390 1 1795 220 45 5 chr1 115142523 115142923 -167050741 - MLT1B-int LTR MaLR -6 1729 1314 263 253 24 24 chr1 115143066 115143149 -167050515 - MLT1B-int LTR MaLR -970 765 683 304 209 28 71 chr1 115143162 115143335 -167050329 - MLT1-int LTR MaLR -484 887 631 4244 219 41 52 chr1 115143356 115144703 -167048961 + L1MA6 LINE L1 2224 3555 -2591 252 0 0 0 chr1 115144705 115144733 -167048931 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 7651 19 0 0 chr1 115144736 115145753 -167047911 - L1PA2 LINE L1 -5 6150 5132 4663 30 0 0 chr1 115145753 115146317 -167047347 + L1PA2 LINE L1 4569 5132 -1014 * 8061 185 43 18 chr1 115146316 115146442 -167047222 + L1MA6 LINE L1 3548 3669 -2631 357 24 0 0 chr1 115146442 115146484 -167047180 + (CA)n Simple_repeat Simple_repeat 2 43 0 8061 185 43 18 chr1 115146484 115147146 -167046518 + L1MA6 LINE L1 3669 4313 -1987 2106 129 0 0 chr1 115147146 115147440 -167046224 + AluSx SINE Alu 6 299 -13 8061 185 43 18 chr1 115147440 115148722 -167044942 + L1MA6 LINE L1 4313 5674 -626 1104 37 0 0 chr1 115148720 115148855 -167044809 - L1PA8 LINE L1 -186 5968 5834 * 1315 83 0 16 chr1 115148855 115149046 -167044618 + L1PA8 LINE L1 5981 6169 -3 2892 185 63 0 chr1 115149046 115149643 -167044021 + L1MA6 LINE L1 5657 6299 -1 265 304 61 0 chr1 115150728 115150843 -167042821 + L1M4 LINE L1 5240 5361 -785 2876 158 49 15 chr1 115150847 115151436 -167042228 + L1MA8 LINE L1 5657 6265 -26 1911 134 4 0 chr1 115151465 115151776 -167041888 - AluSq SINE Alu 0 318 7 774 339 55 23 chr1 115151959 115152446 -167041218 - ERVL LTR ERVL -2980 2784 2282 306 380 33 16 chr1 115152647 115152892 -167040772 - ERVL LTR ERVL -3728 2036 1788 21 0 0 0 chr1 115152959 115152980 -167040684 + AT_rich Low_complexity Low_complexity 1 21 0 614 295 44 18 chr1 115154302 115154529 -167039135 - MIR SINE MIR -1 261 29 1878 194 3 11 chr1 115156893 115157243 -167036421 + LTR32 LTR ERVL 15 361 -110 784 170 20 33 chr1 115157234 115157387 -167036277 + LTR32 LTR ERVL 321 471 0 * 1812 175 7 0 chr1 115158440 115158743 -167034921 + AluSp SINE Alu 1 305 -8 2054 329 110 24 chr1 115159002 115159504 -167034160 - L2 LINE L2 -61 3211 2754 1491 112 27 0 chr1 115159504 115159728 -167033936 + MER30 DNA MER1_type 1 230 0 2054 329 110 24 chr1 115159728 115160680 -167032984 - L2 LINE L2 -518 2754 1567 400 349 228 2 chr1 115160714 115161152 -167032512 + L2 LINE L2 2010 2546 -768 2148 242 87 11 chr1 115161173 115161780 -167031884 + MER82 DNA MER2_type 1 653 0 355 330 88 10 chr1 115161798 115161992 -167031672 + L2 LINE L2 3100 3308 -5 531 271 14 0 chr1 115162397 115162537 -167031127 - MER63 DNA MER1_type 0 1060 919 518 228 25 95 chr1 115162751 115162909 -167030755 + MER77 LTR ERV1 10 156 -449 1694 184 14 32 chr1 115163167 115163216 -167030448 + MLT2D LTR ERVL 1 49 -365 1877 199 11 6 chr1 115163216 115163577 -167030087 - MLT1A1 LTR MaLR -2 363 1 1694 184 14 32 chr1 115163577 115163897 -167029767 + MLT2D LTR ERVL 49 363 -51 211 244 0 0 chr1 115163910 115163955 -167029709 + (TA)n Simple_repeat Simple_repeat 1 45 0 271 169 0 51 chr1 115163956 115163972 -167029692 + MLT2D LTR ERVL 465 480 -40 342 0 0 0 chr1 115163972 115164010 -167029654 + (TG)n Simple_repeat Simple_repeat 2 39 0 271 169 0 51 chr1 115164010 115164052 -167029612 + MLT2D LTR ERVL 480 520 0 1990 272 28 46 chr1 115164105 115164775 -167028889 + MER21-int LTR ERV1 3479 4136 -55 817 251 15 20 chr1 115166265 115166468 -167027196 + MER77 LTR ERV1 404 605 0 226 233 38 15 chr1 115166639 115166772 -167026892 + (TCTCTG)n Simple_repeat Simple_repeat 2 137 0 3620 55 2 0 chr1 115167280 115167736 -167025928 - L1P LINE L1 -1158 4988 4532 7287 42 1 1 chr1 115167736 115168955 -167024709 + L1PA4 LINE L1 4930 6145 -10 3329 57 2 0 chr1 115168535 115168955 -167024709 + L1PA4 LINE L1 5725 6171 0 235 0 0 0 chr1 115168955 115168981 -167024683 + (TAAA)n Simple_repeat Simple_repeat 3 172 0 1719 150 84 39 chr1 115169059 115169131 -167024533 - THE1C LTR MaLR 0 375 308 1969 97 0 4 chr1 115169131 115169390 -167024274 + AluSc SINE Alu 39 296 -13 1719 150 84 39 chr1 115169390 115169676 -167023988 - THE1C LTR MaLR -67 308 1 1677 169 161 13 chr1 115169846 115170219 -167023445 - MSTA LTR MaLR 0 428 1 1665 186 21 3 chr1 115170220 115170547 -167023117 - MSTA-int LTR MaLR -1 1650 1318 194 152 0 22 chr1 115170711 115170757 -167022907 + (TA)n Simple_repeat Simple_repeat 2 46 0 286 326 11 0 chr1 115170759 115170854 -167022810 + Tigger7 DNA MER2_type 2379 2474 -17 393 22 0 0 chr1 115170854 115170900 -167022764 + (TA)n Simple_repeat Simple_repeat 2 47 0 369 43 0 0 chr1 115170918 115170965 -167022699 + (TG)n Simple_repeat Simple_repeat 2 48 0 1344 210 24 7 chr1 115171380 115171675 -167021989 - AluJo SINE Alu -12 300 1 2020 114 14 0 chr1 115171716 115172006 -167021658 - AluSg1 SINE Alu -10 299 6 21 36 0 0 chr1 115172013 115172041 -167021623 + AT_rich Low_complexity Low_complexity 1 28 0 324 247 0 0 chr1 115172158 115172231 -167021433 + L1MB3 LINE L1 4843 4915 -1231 2198 190 52 2 chr1 115172249 115172695 -167020969 + L1MB3 LINE L1 5672 6145 -38 2147 58 0 0 chr1 115172695 115172955 -167020709 - AluY SINE Alu -15 296 37 2198 190 52 2 chr1 115172955 115172993 -167020671 + L1MB3 LINE L1 6145 6180 -3 24 32 0 0 chr1 115174283 115174314 -167019350 + AT_rich Low_complexity Low_complexity 1 31 0 1684 147 59 25 chr1 115174626 115174946 -167018718 - MER44D DNA MER2_type 0 609 9 24 0 0 0 chr1 115175228 115175252 -167018412 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 115175741 115175762 -167017902 + AT_rich Low_complexity Low_complexity 1 21 0 1059 219 7 68 chr1 115175763 115176073 -167017591 - MLT1B LTR MaLR 0 390 100 * 6201 164 30 70 chr1 115176068 115177349 -167016315 - Tigger1 DNA MER2_type -6 2412 1182 2039 90 13 43 chr1 115177374 115177675 -167015989 - AluY SINE Alu -17 294 3 2127 174 17 36 chr1 115177675 115178095 -167015569 - Tigger1 DNA MER2_type -2005 413 2 536 173 19 29 chr1 115178097 115178201 -167015463 - MLT1B LTR MaLR -287 103 1 198 128 58 12 chr1 115178222 115178308 -167015356 + (TA)n Simple_repeat Simple_repeat 1 90 0 28 71 0 0 chr1 115178311 115178367 -167015297 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr1 115178434 115178465 -167015199 + AT_rich Low_complexity Low_complexity 1 31 0 596 363 44 0 chr1 115179530 115179825 -167013839 + L2 LINE L2 2145 2452 -862 1121 232 94 56 chr1 115180087 115180535 -167013129 + MLT1C LTR MaLR 3 467 0 2221 285 78 17 chr1 115180537 115181246 -167012418 + MLT1C-int LTR MaLR 353 1104 -267 1789 167 85 18 chr1 115181246 115181588 -167012076 + MLT1A1 LTR MaLR 1 365 0 594 253 20 40 chr1 115181588 115181786 -167011878 + MLT1C-int LTR MaLR 1100 1293 -78 377 252 19 10 chr1 115181760 115181863 -167011801 + MLT1C-int LTR MaLR 1239 1342 -29 * 1872 227 24 9 chr1 115181940 115182399 -167011265 + MLT1C LTR MaLR 2 467 0 1229 239 91 24 chr1 115182400 115182773 -167010891 + MLT1C LTR MaLR 70 467 0 697 339 65 25 chr1 115182773 115183174 -167010490 + L2 LINE L2 2819 3235 -78 203 271 224 0 chr1 115183316 115183401 -167010263 + MIR SINE MIR 156 259 -3 265 310 86 26 chr1 115183401 115183517 -167010147 + L2 LINE L2 3187 3309 -4 446 378 99 16 chr1 115183584 115184018 -167009646 - L2 LINE L2 -561 2753 2284 1966 142 0 0 chr1 115184031 115184305 -167009359 + AluSx SINE Alu 16 289 -23 351 203 0 0 chr1 115184306 115184380 -167009284 + GA-rich Low_complexity Low_complexity 1 74 0 249 313 10 20 chr1 115184382 115184481 -167009183 - L2 LINE L2 -1026 2288 2191 22 0 0 0 chr1 115185706 115185728 -167007936 + AT_rich Low_complexity Low_complexity 1 22 0 300 53 0 0 chr1 115186423 115186461 -167007203 + (A)n Simple_repeat Simple_repeat 1 38 0 227 161 0 36 chr1 115186778 115186834 -167006830 + T-rich Low_complexity Low_complexity 1 54 0 1056 295 89 33 chr1 115186935 115187633 -167006031 + HAL1 LINE L1 1210 1946 -561 4199 190 97 18 chr1 115187790 115188486 -167005178 - L1MC3 LINE L1 -1 7784 6984 255 79 0 0 chr1 115188486 115188524 -167005140 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 4199 190 97 18 chr1 115188524 115188826 -167004838 - L1MC3 LINE L1 -801 6984 6707 255 348 79 0 chr1 115189767 115189856 -167003808 - L2 LINE L2 -26 3246 3151 22 56 0 0 chr1 115190929 115190965 -167002699 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr1 115191107 115191140 -167002524 + AT_rich Low_complexity Low_complexity 1 33 0 1041 271 88 45 chr1 115191259 115191702 -167001962 + MLT1C LTR MaLR 6 467 0 22 0 0 0 chr1 115191840 115191862 -167001802 + AT_rich Low_complexity Low_complexity 1 22 0 469 153 71 0 chr1 115192044 115192129 -167001535 - L1PA8A LINE L1 -9 6122 6032 296 53 0 0 chr1 115192129 115192167 -167001497 + L1PA6 LINE L1 5947 5984 -170 2187 88 3 3 chr1 115192484 115192811 -167000853 + AluSp SINE Alu 1 327 0 186 308 15 0 chr1 115192823 115192888 -167000776 + MIR SINE MIR 88 153 -109 21 0 0 0 chr1 115192905 115192926 -167000738 + AT_rich Low_complexity Low_complexity 1 21 0 239 244 142 31 chr1 115193606 115193733 -166999931 + MLT1D LTR MaLR 90 230 -275 754 291 75 8 chr1 115194922 115195163 -166998501 - MIR SINE MIR 0 262 6 189 211 0 0 chr1 115196655 115196712 -166996952 + GA-rich Low_complexity Low_complexity 3 59 0 328 261 92 92 chr1 115197074 115197269 -166996395 + HAL1 LINE L1 3 197 -2310 225 0 0 0 chr1 115197817 115197842 -166995822 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3483 235 22 10 chr1 115197867 115197925 -166995739 + L1P LINE L1 1038 1094 -5052 4620 106 3 34 chr1 115197925 115198635 -166995029 + LTR12 LTR ERV1 1 688 0 3483 235 22 10 chr1 115198635 115200861 -166992803 + L1P LINE L1 1094 3383 -2763 269 174 0 0 chr1 115200855 115200901 -166992763 + L1MC3 LINE L1 7056 7101 -684 * 217 307 57 0 chr1 115200956 115201044 -166992620 + L2 LINE L2 3117 3209 -104 1875 350 8 7 chr1 115201469 115202083 -166991581 + L1PA13 LINE L1 53 667 -6172 5071 242 29 19 chr1 115202363 115203714 -166989950 + L1PA13 LINE L1 1668 3031 -3818 2293 89 0 19 chr1 115203714 115204028 -166989636 + AluY SINE Alu 2 309 -2 5071 242 29 19 chr1 115204028 115204697 -166988967 + L1PA13 LINE L1 3031 3692 -3157 19585 200 28 19 chr1 115204718 115205099 -166988565 - L1PA12 LINE L1 -15 7591 7215 2259 84 10 3 chr1 115205099 115205398 -166988266 - AluY SINE Alu -10 301 1 19585 200 28 19 chr1 115205398 115210524 -166983140 - L1PA12 LINE L1 -391 7215 1221 22 0 0 0 chr1 115210791 115210813 -166982851 + AT_rich Low_complexity Low_complexity 1 22 0 2007 144 20 44 chr1 115211383 115211773 -166981891 + Tigger2a DNA MER2_type 1 381 -53 3808 14 0 0 chr1 115211783 115212217 -166981447 - L1PA3 LINE L1 -4 6151 5718 198 0 0 0 chr1 115212222 115212244 -166981420 + (T)n Simple_repeat Simple_repeat 1 22 0 315 279 0 15 chr1 115212330 115212398 -166981266 + Tigger2a DNA MER2_type 378 444 0 3861 176 6 53 chr1 115213219 115213476 -166980188 - L1MA7 LINE L1 0 6291 6023 1464 182 64 14 chr1 115213476 115213756 -166979908 - AluJb SINE Alu -16 296 3 3861 176 6 53 chr1 115213756 115214344 -166979320 - L1MA7 LINE L1 -268 6023 5486 295 330 67 19 chr1 115214346 115214555 -166979109 + L2 LINE L2 2148 2366 -948 336 85 0 0 chr1 115214804 115214851 -166978813 + MADE1 DNA Mariner 1 47 -33 1904 197 34 7 chr1 115215390 115215806 -166977858 - MER95 LTR ERV 0 431 5 330 273 39 0 chr1 115216335 115216412 -166977252 + L2 LINE L2 3230 3309 -4 689 280 47 14 chr1 115216494 115216705 -166976959 - MIR SINE MIR -38 224 7 2506 221 29 57 chr1 115217096 115217711 -166975953 - ERVL LTR ERVL -2949 607 10 848 244 13 7 chr1 115217934 115218233 -166975431 - AluYa5 SINE Alu 0 301 1 966 148 0 0 chr1 115218641 115218817 -166974847 + (TA)n Simple_repeat Simple_repeat 1 176 0 1002 157 95 19 chr1 115218817 115219027 -166974637 - MER44D DNA MER2_type -112 497 2 327 191 37 4 chr1 115219089 115219258 -166974406 + (TA)n Simple_repeat Simple_repeat 1 174 0 2805 10 0 0 chr1 115219752 115220063 -166973601 - AluYa5 SINE Alu 0 311 1 277 348 9 0 chr1 115220582 115220694 -166972970 + MIR SINE MIR 38 150 -58 607 299 94 38 chr1 115221322 115221610 -166972054 + L2 LINE L2 3008 3311 -2 23 68 0 0 chr1 115222430 115222474 -166971190 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr1 115222639 115222679 -166970985 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr1 115223072 115223098 -166970566 + (TG)n Simple_repeat Simple_repeat 1 26 0 194 182 36 0 chr1 115223118 115223173 -166970491 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 21 0 0 0 chr1 115223174 115223195 -166970469 + AT_rich Low_complexity Low_complexity 1 21 0 222 118 0 0 chr1 115223499 115223533 -166970131 + (TG)n Simple_repeat Simple_repeat 2 35 0 258 339 71 29 chr1 115224381 115224620 -166969044 - ERVL LTR ERVL -853 4911 4663 535 316 107 17 chr1 115224856 115225090 -166968574 - ERVL LTR ERVL -1329 4325 4071 227 270 132 35 chr1 115226373 115226662 -166967002 - L1M4 LINE L1 -1453 4693 4377 265 250 112 26 chr1 115226735 115226851 -166966813 - L1M4 LINE L1 -1921 4225 4100 403 308 122 19 chr1 115227000 115227214 -166966450 - MIR SINE MIR -24 238 3 2231 60 0 7 chr1 115227229 115227549 -166966115 + AluY SINE Alu 1 318 0 484 214 29 0 chr1 115227636 115227776 -166965888 + CT-rich Low_complexity Low_complexity 3 146 0 267 290 19 56 chr1 115228695 115228802 -166964862 + MIR SINE MIR 48 150 -112 420 212 25 76 chr1 115229145 115229263 -166964401 + MIR SINE MIR 78 189 -73 318 26 0 0 chr1 115229453 115229492 -166964172 + (TG)n Simple_repeat Simple_repeat 2 40 0 5764 211 50 17 chr1 115229499 115230772 -166962892 - L1MA4 LINE L1 -1 6299 4928 2545 45 3 6 chr1 115230772 115231083 -166962581 - AluY SINE Alu -1 310 1 5764 211 50 17 chr1 115231083 115231768 -166961896 - L1MA4 LINE L1 -1372 4928 4267 8456 31 1 1 chr1 115231896 115233694 -166959970 + L1PA3 LINE L1 4352 6153 -2 1756 199 98 63 chr1 115235366 115235889 -166957775 + LTR55 LTR ERV 1 541 -7 1554 274 30 36 chr1 115235895 115236639 -166957025 + L1M4 LINE L1 2293 3031 -3115 568 314 137 11 chr1 115236669 115237055 -166956609 + L2 LINE L2 2656 3085 -228 400 326 57 78 chr1 115237091 115237422 -166956242 - MLT1J1 LTR MaLR -47 399 76 194 225 0 70 chr1 115237564 115237635 -166956029 + L2 LINE L2 3167 3232 -81 2319 60 7 7 chr1 115238644 115238945 -166954719 + AluY SINE Alu 1 301 -10 58 47 0 0 chr1 115239022 115239108 -166954556 + AT_rich Low_complexity Low_complexity 1 86 0 6067 155 41 45 chr1 115239251 115240402 -166953262 - MSTA-int LTR MaLR -432 1148 3 1550 169 177 16 chr1 115240404 115240771 -166952893 - MSTA LTR MaLR 0 428 3 503 248 0 9 chr1 115241409 115241514 -166952150 - LTR16A LTR ERVL -6 444 341 249 220 34 0 chr1 115241632 115241691 -166951973 - LTR16A1 LTR ERVL -225 232 172 1078 176 0 0 chr1 115241720 115241885 -166951779 + AluSg/x SINE Alu 126 290 -22 2019 270 26 19 chr1 115241930 115242507 -166951157 + MER92B LTR ERV1 2 582 -54 27 73 0 0 chr1 115242935 115242990 -166950674 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr1 115243044 115243073 -166950591 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr1 115243263 115243304 -166950360 + AT_rich Low_complexity Low_complexity 1 41 0 1860 207 33 20 chr1 115243364 115243394 -166950270 - MSTD LTR MaLR 0 396 368 1860 143 113 38 chr1 115243394 115243792 -166949872 - MSTA LTR MaLR 0 428 1 1860 207 33 20 chr1 115243792 115244152 -166949512 - MSTD LTR MaLR -28 368 1 21 57 0 0 chr1 115244252 115244287 -166949377 + AT_rich Low_complexity Low_complexity 1 35 0 2828 6 0 0 chr1 115244469 115244780 -166948884 - AluYa5 SINE Alu 0 311 1 37 0 0 0 chr1 115244799 115244836 -166948828 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 115246385 115246420 -166947244 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 115246430 115246468 -166947196 + AT_rich Low_complexity Low_complexity 1 38 0 1233 205 175 0 chr1 115247139 115247476 -166946188 - MSTD LTR MaLR 0 396 1 5008 253 114 37 chr1 115247476 115249087 -166944577 - MSTD-int LTR MaLR 0 1735 2 1228 245 130 14 chr1 115249089 115249444 -166944220 - MSTD LTR MaLR 0 396 1 24 67 0 0 chr1 115250487 115250532 -166943132 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 115251627 115251662 -166942002 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr1 115251701 115251734 -166941930 + AT_rich Low_complexity Low_complexity 1 33 0 668 330 60 21 chr1 115251930 115252263 -166941401 - L2 LINE L2 0 3313 2968 1939 183 8 19 chr1 115252355 115252722 -166940942 - THE1B LTR MaLR 0 364 2 4475 233 46 74 chr1 115252723 115253605 -166940059 - THE1B-int LTR MaLR 0 1651 839 6576 78 24 0 chr1 115253605 115254687 -166938977 - L1PA7 LINE L1 -1 6153 5064 4475 233 46 74 chr1 115254687 115255498 -166938166 - THE1B-int LTR MaLR -812 839 6 2143 147 11 19 chr1 115255503 115255870 -166937794 - THE1B LTR MaLR 0 364 1 233 302 0 0 chr1 115255870 115255933 -166937731 - L2 LINE L2 -657 2657 2595 640 218 20 2 chr1 115255933 115256093 -166937571 + LTR1B LTR ERV1 1 159 -626 1491 84 37 9 chr1 115256093 115256308 -166937356 + MER11A LTR ERVK 1 221 -1045 4278 96 42 3 chr1 115256308 115256921 -166936743 + MER11A LTR ERVK 630 1266 0 1176 225 105 98 chr1 115256921 115257520 -166936144 + LTR1B LTR ERV1 144 746 -80 1967 336 72 32 chr1 115257642 115258525 -166935139 - L2 LINE L2 -715 2599 1658 1966 139 13 0 chr1 115258525 115258828 -166934836 - AluY SINE Alu -4 307 1 1967 336 72 32 chr1 115258828 115259083 -166934581 - L2 LINE L2 -1656 1658 1415 378 211 74 0 chr1 115259091 115259186 -166934478 - L1MB5 LINE L1 -9 6165 6064 2306 112 30 6 chr1 115259247 115259586 -166934078 - MLT2A2 LTR ERVL -106 347 1 5269 72 34 0 chr1 115259586 115260291 -166933373 - HERVL-A2 LTR ERVL 0 5654 4926 2977 264 57 3 chr1 115260310 115261286 -166932378 - L1M4 LINE L1 -1144 5500 4472 325 283 10 0 chr1 115261295 115261394 -166932270 + (CATATA)n Simple_repeat Simple_repeat 3 102 0 306 273 0 0 chr1 115261395 115261483 -166932181 + L1MC4 LINE L1 6613 6700 -1342 2619 267 85 31 chr1 115261558 115263172 -166930492 - L1M4 LINE L1 -4747 1899 174 905 294 58 78 chr1 115263298 115263865 -166929799 - L2 LINE L2 -1942 1372 817 186 405 150 20 chr1 115263920 115264167 -166929497 + L2 LINE L2 2829 3107 -206 11885 173 47 17 chr1 115264219 115265390 -166928274 + Tigger1 DNA MER2_type 1 1135 -1283 1987 33 4 0 chr1 115265390 115265630 -166928034 + L1PA4 LINE L1 5911 6151 -4 11885 173 47 17 chr1 115265630 115265975 -166927689 + Tigger1 DNA MER2_type 1135 1468 -950 1828 138 45 7 chr1 115265975 115266265 -166927399 + AluSx SINE Alu 1 301 -11 11885 173 47 17 chr1 115266265 115267090 -166926574 + Tigger1 DNA MER2_type 1468 2414 -4 21 0 0 0 chr1 115267462 115267483 -166926181 + AT_rich Low_complexity Low_complexity 1 21 0 245 309 0 31 chr1 115268665 115268762 -166924902 + HAL1 LINE L1 1 94 -2413 290 241 0 74 chr1 115269281 115269389 -166924275 + L1MC4 LINE L1 6610 6709 -1333 547 283 123 58 chr1 115269405 115270021 -166923643 + HAL1 LINE L1 1110 1765 -742 1131 283 61 23 chr1 115270937 115271498 -166922166 + L1ME3A LINE L1 5474 6053 -117 28 61 0 0 chr1 115271858 115271907 -166921757 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr1 115273671 115273700 -166919964 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 115273711 115273734 -166919930 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 115274523 115274545 -166919119 + AT_rich Low_complexity Low_complexity 1 22 0 225 359 0 26 chr1 115274639 115274717 -166918947 - MER5A DNA MER1_type -35 154 79 649 272 163 26 chr1 115274771 115275224 -166918440 + MLT1H LTR MaLR 1 541 -14 29 28 0 0 chr1 115277655 115277691 -166915973 + AT_rich Low_complexity Low_complexity 1 36 0 1309 175 45 22 chr1 115278720 115279030 -166914634 - AluJb SINE Alu 0 326 11 330 317 49 49 chr1 115279404 115279568 -166914096 + MIR3 SINE MIR 42 205 -3 2110 146 28 0 chr1 115279912 115280484 -166913180 - LTR25 LTR ERV1 0 794 141 1442 143 0 0 chr1 115280872 115281089 -166912575 - AluSg/x SINE Alu -3 309 93 286 368 43 31 chr1 115281130 115281456 -166912208 - MLT1J LTR MaLR -34 477 148 30 0 0 0 chr1 115281730 115281760 -166911904 + AT_rich Low_complexity Low_complexity 1 30 0 1858 143 32 27 chr1 115283739 115284111 -166909553 - THE1C LTR MaLR 0 375 2 2837 6 0 0 chr1 115284437 115284748 -166908916 + AluY SINE Alu 1 311 0 8756 85 11 3 chr1 115285560 115287528 -166906136 - L1PA7 LINE L1 -20 6134 4150 1636 204 28 84 chr1 115287546 115288081 -166905583 - MLT1D LTR MaLR 0 505 1 266 269 0 87 chr1 115289580 115289684 -166903980 - L2 LINE L2 0 3313 3219 1803 324 67 51 chr1 115290045 115290683 -166902981 - L2 LINE L2 -2175 1139 474 3869 134 16 2 chr1 115290683 115291309 -166902355 + MER41B LTR ERV1 1 635 0 1803 324 67 51 chr1 115291309 115291791 -166901873 - L2 LINE L2 -2840 474 1 27 49 0 0 chr1 115292032 115292073 -166901591 + AT_rich Low_complexity Low_complexity 1 41 0 293 321 0 0 chr1 115292132 115292216 -166901448 + MER34 LTR ERV1 1 84 -458 563 244 81 53 chr1 115292227 115292649 -166901015 + LTR48 LTR ERV1 164 755 -32 1541 239 80 48 chr1 115292685 115293672 -166899992 + L1ME2 LINE L1 5092 6150 -14 313 316 39 32 chr1 115293953 115294034 -166899630 + L1MC/D LINE L1 5637 5721 -2087 2073 142 0 0 chr1 115294034 115294345 -166899319 + AluSx SINE Alu 1 311 -1 313 316 39 32 chr1 115294345 115294418 -166899246 + L1MC/D LINE L1 5721 5792 -2016 5228 114 82 109 chr1 115294504 115296084 -166897580 - pTR5 LTR ERV1 0 2438 744 540 233 15 91 chr1 115296084 115296446 -166897218 + LTR28 LTR ERV1 3 427 -209 2046 96 3 72 chr1 115296447 115296782 -166896882 + AluSx SINE Alu 1 312 0 604 275 0 0 chr1 115297175 115297335 -166896329 + MER52A LTR ERV1 1593 1752 -3 36 0 0 0 chr1 115297480 115297516 -166896148 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr1 115298248 115298279 -166895385 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 115299469 115299490 -166894174 + AT_rich Low_complexity Low_complexity 1 21 0 251 355 100 25 chr1 115299626 115299826 -166893838 - MIR SINE MIR -17 245 31 659 253 119 60 chr1 115300178 115300458 -166893206 - MER93b LTR ERV1 0 373 66 2324 53 0 7 chr1 115300458 115300757 -166892907 - AluY SINE Alu -13 298 2 659 253 119 60 chr1 115300757 115300828 -166892836 - MER93b LTR ERV1 -307 66 1 702 283 42 11 chr1 115300836 115301027 -166892637 + MLT1H1 LTR MaLR 289 485 -70 23 54 0 0 chr1 115301777 115301814 -166891850 + AT_rich Low_complexity Low_complexity 1 37 0 481 260 25 51 chr1 115303061 115303257 -166890407 + L2 LINE L2 2217 2407 -907 425 336 82 18 chr1 115303652 115303872 -166889792 + MIR SINE MIR 11 244 -18 21 36 0 0 chr1 115303890 115303918 -166889746 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr1 115305057 115305092 -166888572 + (CAT)n Simple_repeat Simple_repeat 2 36 0 771 208 82 36 chr1 115305454 115305671 -166887993 + MER33 DNA MER1_type 4 240 -2345 1985 68 0 0 chr1 115305671 115305922 -166887742 + AluY SINE Alu 44 294 -17 771 208 82 36 chr1 115305922 115306007 -166887657 + MER33 DNA MER1_type 240 320 -4 1547 251 76 5 chr1 115306431 115307025 -166886639 + L1M4 LINE L1 2241 2876 -3270 1105 247 82 80 chr1 115307042 115307898 -166885766 + L1M4 LINE L1 4558 5419 -784 25 51 0 0 chr1 115308068 115308107 -166885557 + AT_rich Low_complexity Low_complexity 1 39 0 1814 174 0 0 chr1 115308370 115308664 -166885000 - AluJb SINE Alu -12 300 7 405 293 22 66 chr1 115308873 115309054 -166884610 + MER5B DNA MER1_type 5 177 -1 23 0 0 0 chr1 115309687 115309710 -166883954 + AT_rich Low_complexity Low_complexity 1 23 0 361 300 115 78 chr1 115310558 115310641 -166883023 + MIR SINE MIR 11 89 -173 1822 130 56 3 chr1 115310641 115310925 -166882739 - AluSg SINE Alu -11 299 1 361 300 115 78 chr1 115310925 115311084 -166882580 + MIR SINE MIR 89 262 0 239 282 86 68 chr1 115311458 115311621 -166882043 - MIR SINE MIR -76 186 21 1278 118 28 24 chr1 115311702 115311913 -166881751 - THE1B LTR MaLR -152 212 1 8603 128 116 0 chr1 115311913 115313329 -166880335 - THE1B-int LTR MaLR 0 1580 1 1714 176 30 46 chr1 115313329 115313699 -166879965 - THE1B LTR MaLR 0 364 1 31 44 0 0 chr1 115314250 115314295 -166879369 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 115315172 115315205 -166878459 + AT_rich Low_complexity Low_complexity 1 33 0 190 273 0 61 chr1 115315384 115315450 -166878214 + L3 LINE CR1 356 417 -1160 315 256 12 0 chr1 115315983 115316065 -166877599 - LTR33 LTR ERVL -2 519 437 1771 168 12 30 chr1 115316126 115316454 -166877210 + MLT1B LTR MaLR 38 359 -31 723 317 29 52 chr1 115316484 115316790 -166876874 - LTR33 LTR ERVL -220 301 3 239 218 90 105 chr1 115317026 115317159 -166876505 + MLT1J LTR MaLR 237 367 -144 946 283 112 34 chr1 115317244 115317480 -166876184 + MER34 LTR ERV1 1 217 -325 433 72 0 196 chr1 115317480 115317577 -166876087 - MADE1 DNA Mariner -2 78 1 946 283 112 34 chr1 115317577 115317841 -166875823 + MER34 LTR ERV1 217 540 -2 1400 187 66 0 chr1 115317932 115318189 -166875475 - AluJo SINE Alu -2 310 37 216 290 113 48 chr1 115318282 115318406 -166875258 + MIR SINE MIR 81 212 -50 393 157 8 37 chr1 115318507 115318607 -166875057 - L1MC5 LINE L1 0 8042 7831 242 150 0 0 chr1 115318868 115318908 -166874756 - L1MC4 LINE L1 -1656 6386 6347 * 387 185 13 0 chr1 115318899 115318993 -166874671 - L1ME2 LINE L1 0 6166 6072 1959 147 0 3 chr1 115319215 115319515 -166874149 - AluSx SINE Alu -13 299 1 31 0 0 0 chr1 115319562 115319593 -166874071 + AT_rich Low_complexity Low_complexity 1 31 0 1253 162 31 4 chr1 115320833 115321061 -166872603 + L1M3 LINE L1 5572 5805 -363 520 200 0 0 chr1 115321351 115321446 -166872218 - L1MC1 LINE L1 -14 6319 6225 1105 209 37 12 chr1 115321455 115321740 -166871924 + MLT1A1 LTR MaLR 10 365 0 1693 208 3 6 chr1 115321740 115322072 -166871592 - L1MC1 LINE L1 -104 6229 5899 1240 246 63 26 chr1 115322072 115322454 -166871210 + MSTD LTR MaLR 1 396 0 3799 246 34 28 chr1 115322456 115323441 -166870223 + MSTD-int LTR MaLR 2 991 -744 1743 268 112 52 chr1 115323441 115324147 -166869517 + MER21B LTR ERV1 54 801 -62 891 205 147 61 chr1 115324181 115324508 -166869156 + MER31B LTR ERV1 104 458 -8 598 236 5 130 chr1 115324512 115324850 -166868814 - L1MC2 LINE L1 -209 5957 5677 450 265 138 31 chr1 115324857 115324946 -166868718 + LTR8 LTR ERV1 1 79 -612 288 0 0 0 chr1 115324946 115324978 -166868686 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 450 265 138 31 chr1 115324978 115325084 -166868580 + LTR8 LTR ERV1 79 217 -474 869 264 97 58 chr1 115325162 115325636 -166868028 + LTR8A LTR ERV1 107 727 0 1334 251 43 57 chr1 115325638 115326285 -166867379 - L1MC2 LINE L1 -514 5652 5008 1925 121 26 0 chr1 115326285 115326586 -166867078 - AluSx SINE Alu 0 312 5 1334 251 43 57 chr1 115326586 115326651 -166867013 - L1MC2 LINE L1 -1158 5008 4944 819 236 91 84 chr1 115326660 115327198 -166866466 - MER34 LTR ERV1 0 542 1 231 61 0 0 chr1 115328117 115328150 -166865514 + (CA)n Simple_repeat Simple_repeat 2 34 0 258 261 100 0 chr1 115329150 115329259 -166864405 + MIR3 SINE MIR 68 187 -21 21 57 0 0 chr1 115329270 115329305 -166864359 + AT_rich Low_complexity Low_complexity 1 35 0 957 251 16 24 chr1 115330139 115330198 -166863466 + MER92B LTR ERV1 5 63 -573 1985 131 64 17 chr1 115330198 115330556 -166863108 + THE1C LTR MaLR 1 375 0 957 251 16 24 chr1 115330556 115330743 -166862921 + MER92B LTR ERV1 63 249 -387 1077 208 4 8 chr1 115330861 115331101 -166862563 + L1 LINE L1 4715 4953 -1193 343 305 79 35 chr1 115331177 115331380 -166862284 + MER92B LTR ERV1 418 629 -7 924 139 14 112 chr1 115331562 115331785 -166861879 + MER67D LTR ERV1 1 201 -313 1463 98 0 5 chr1 115331858 115332063 -166861601 - AluY SINE Alu -2 309 106 242 262 143 0 chr1 115332775 115332859 -166860805 + MIR SINE MIR 48 143 -119 656 281 162 15 chr1 115333150 115333484 -166860180 - MLT1J1 LTR MaLR 0 446 64 244 274 79 84 chr1 115334517 115334732 -166858932 + L2 LINE L2 2217 2430 -884 1509 233 112 14 chr1 115334757 115335250 -166858414 + MER34 LTR ERV1 2 542 0 21 0 0 0 chr1 115337911 115337932 -166855732 + AT_rich Low_complexity Low_complexity 1 21 0 7389 39 1 1 chr1 115338164 115339074 -166854590 - L1PA3 LINE L1 -1100 5046 4137 7290 36 0 2 chr1 115339073 115340203 -166853461 + L1PA3 LINE L1 5054 6182 0 * 2059 123 10 0 chr1 115340914 115341222 -166852442 - AluSq SINE Alu -2 311 1 1467 155 28 8 chr1 115341282 115341534 -166852130 - MER7C DNA MER2_type -3 600 344 2197 190 22 78 chr1 115341536 115342114 -166851550 - MLT2B3 LTR ERVL -8 546 1 1107 184 37 9 chr1 115342114 115342331 -166851333 - MER7C DNA MER2_type -353 249 27 37 23 0 0 chr1 115342999 115343043 -166850621 + AT_rich Low_complexity Low_complexity 1 44 0 4918 179 40 8 chr1 115343661 115344644 -166849020 - L1PA13 LINE L1 -973 5173 4160 6033 104 12 5 chr1 115344646 115345610 -166848054 + L1PA13 LINE L1 5189 6163 0 228 280 230 30 chr1 115345890 115345990 -166847674 + MIR SINE MIR 3 122 -140 22 70 0 0 chr1 115346005 115346048 -166847616 + AT_rich Low_complexity Low_complexity 1 43 0 211 188 16 16 chr1 115346907 115346971 -166846693 + CT-rich Low_complexity Low_complexity 2 65 0 26 30 0 0 chr1 115347665 115347698 -166845966 + AT_rich Low_complexity Low_complexity 1 33 0 2726 25 0 0 chr1 115347698 115348016 -166845648 - L1PA3 LINE L1 -3 6152 5835 1842 173 10 0 chr1 115348390 115348685 -166844979 + AluSx SINE Alu 1 298 -14 1635 197 7 0 chr1 115349031 115349326 -166844338 + AluJb SINE Alu 1 297 -15 334 333 39 26 chr1 115349330 115349561 -166844103 + L1MEc LINE L1 687 920 -5476 1760 274 84 34 chr1 115349679 115350606 -166843058 + L1MEc LINE L1 1109 1988 -4227 261 0 0 0 chr1 115350606 115350635 -166843029 + (CA)n Simple_repeat Simple_repeat 2 30 0 1760 274 84 34 chr1 115350635 115351496 -166842168 + L1MEc LINE L1 1988 2945 -3270 924 263 76 80 chr1 115351516 115352053 -166841611 + L1M4 LINE L1 4561 5095 -1051 398 313 18 0 chr1 115352481 115352593 -166841071 + MER81 DNA DNA 1 114 0 312 283 34 76 chr1 115353506 115353743 -166839921 - MIR SINE MIR -13 249 23 225 145 0 116 chr1 115354018 115354087 -166839577 - L1MC4 LINE L1 -1334 6708 6648 265 277 0 0 chr1 115354121 115354204 -166839460 - L1MC4 LINE L1 -1346 6696 6614 226 194 0 0 chr1 115354205 115354241 -166839423 + (TG)n Simple_repeat Simple_repeat 1 36 0 304 340 94 13 chr1 115354459 115354618 -166839046 + MIR SINE MIR 18 189 -73 213 121 0 0 chr1 115354622 115354655 -166839009 + (CA)n Simple_repeat Simple_repeat 2 34 0 246 32 0 0 chr1 115354678 115354709 -166838955 + (TG)n Simple_repeat Simple_repeat 1 31 0 363 324 29 10 chr1 115355152 115355254 -166838410 - MIR SINE MIR -136 126 23 29 28 0 0 chr1 115355305 115355341 -166838323 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 115355663 115355693 -166837971 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr1 115355751 115355797 -166837867 + AT_rich Low_complexity Low_complexity 1 46 0 2193 96 3 3 chr1 115356241 115356533 -166837131 + AluSx SINE Alu 1 292 -20 450 0 0 0 chr1 115357538 115357588 -166836076 + (GA)n Simple_repeat Simple_repeat 1 50 0 1337 217 71 25 chr1 115358045 115358451 -166835213 - L1ME1 LINE L1 -4 6162 5738 1146 251 33 116 chr1 115358454 115359219 -166834445 - L1ME1 LINE L1 -1777 4369 3677 485 217 117 17 chr1 115359219 115359339 -166834325 - FLAM_A SINE Alu -1 132 1 1146 251 33 116 chr1 115359339 115359401 -166834263 - L1ME1 LINE L1 -2469 3677 3611 561 181 0 14 chr1 115359425 115359647 -166834017 + (TA)n Simple_repeat Simple_repeat 1 218 0 22 35 0 0 chr1 115359960 115359989 -166833675 + AT_rich Low_complexity Low_complexity 1 29 0 1624 192 0 3 chr1 115361793 115362084 -166831580 + AluJo SINE Alu 1 290 -22 419 293 164 21 chr1 115362494 115362781 -166830883 + L2 LINE L2 2027 2354 -960 21 0 0 0 chr1 115363684 115363705 -166829959 + AT_rich Low_complexity Low_complexity 1 21 0 227 324 0 0 chr1 115363760 115363828 -166829836 - L2 LINE L2 -1 3312 3245 1303 180 25 123 chr1 115364237 115364642 -166829022 + MLT1A1 LTR MaLR 1 365 0 473 375 87 22 chr1 115365544 115366051 -166827613 - L2 LINE L2 -410 2904 2365 192 320 0 0 chr1 115366343 115366393 -166827271 + L2 LINE L2 1944 1993 -1321 183 216 39 39 chr1 115366596 115366647 -166827017 - L2 LINE L2 -1524 1790 1740 386 255 20 10 chr1 115367338 115367440 -166826224 - MIR SINE MIR -71 191 89 225 0 0 0 chr1 115368460 115368485 -166825179 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 22 88 0 0 chr1 115368749 115368806 -166824858 + AT_rich Low_complexity Low_complexity 1 57 0 1822 249 52 45 chr1 115369666 115370219 -166823445 + MER21B LTR ERV1 271 827 -36 1704 165 3 22 chr1 115371320 115371636 -166822028 - AluJo SINE Alu -2 310 1 23 33 0 0 chr1 115372472 115372502 -166821162 + AT_rich Low_complexity Low_complexity 1 30 0 1090 199 10 5 chr1 115372577 115372783 -166820881 - AluJb SINE Alu -24 288 82 24 0 0 0 chr1 115373436 115373460 -166820204 + AT_rich Low_complexity Low_complexity 1 24 0 1981 140 9 12 chr1 115373565 115373901 -166819763 + LTR60 LTR ERV1 14 348 -238 2382 200 12 0 chr1 115373932 115374423 -166819241 - L1PB1 LINE L1 -1187 4959 4463 * 3672 141 3 27 chr1 115374422 115375285 -166818379 + L1PB1 LINE L1 4949 5791 -360 397 74 14 81 chr1 115375285 115375433 -166818231 + (TA)n Simple_repeat Simple_repeat 1 138 0 2159 121 35 0 chr1 115375442 115375788 -166817876 + L1PB1 LINE L1 5791 6148 -3 1320 156 19 23 chr1 115375788 115376044 -166817620 + LTR60 LTR ERV1 332 586 0 476 233 4 131 chr1 115375870 115376115 -166817549 + TAR1 Satellite telomeric 28 241 -1870 * 263 87 109 0 chr1 115376109 115376155 -166817509 + LTR60 LTR ERV1 536 586 0 * 4097 193 20 72 chr1 115376242 115377115 -166816549 - L1MCa LINE L1 -5479 947 31 2011 104 0 7 chr1 115377115 115377461 -166816203 - AluSp SINE Alu 0 344 1 2284 84 7 3 chr1 115377465 115377775 -166815889 - AluSq SINE Alu -2 311 1 4097 193 20 72 chr1 115377775 115377870 -166815794 - L1MCa LINE L1 -6398 28 22 1020 156 0 0 chr1 115378190 115378370 -166815294 + (TA)n Simple_repeat Simple_repeat 1 180 0 4106 84 0 4 chr1 115378704 115379260 -166814404 - MER41A LTR ERV1 0 554 1 29 28 0 0 chr1 115379475 115379511 -166814153 + AT_rich Low_complexity Low_complexity 1 36 0 265 277 0 0 chr1 115380550 115380633 -166813031 + L1MC4 LINE L1 6614 6696 -1346 225 145 0 116 chr1 115380667 115380736 -166812928 + L1MC4 LINE L1 6648 6708 -1334 316 285 33 74 chr1 115381007 115381249 -166812415 + MIR SINE MIR 18 249 -13 284 329 107 27 chr1 115383642 115383791 -166809873 - MIR SINE MIR -4 258 98 26 30 0 0 chr1 115384300 115384333 -166809331 + AT_rich Low_complexity Low_complexity 1 33 0 282 73 0 0 chr1 115384984 115385025 -166808639 + (CA)n Simple_repeat Simple_repeat 1 41 0 1757 166 3 0 chr1 115385307 115385635 -166808029 + AluSx SINE Alu 1 329 0 24 53 0 0 chr1 115385972 115386010 -166807654 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr1 115388411 115388441 -166805223 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr1 115389237 115389287 -166804377 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr1 115390698 115390718 -166802946 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 962 263 130 20 chr1 115390720 115390916 -166802748 - L2 LINE L2 -13 3300 3127 1977 175 103 0 chr1 115390916 115391304 -166802360 - MSTA LTR MaLR 0 428 1 962 263 130 20 chr1 115391304 115391498 -166802166 - L2 LINE L2 -186 3127 2867 239 174 159 29 chr1 115391511 115391580 -166802084 + MER53 DNA DNA 85 162 -27 2149 109 3 0 chr1 115391671 115391973 -166801691 + AluSc SINE Alu 1 303 -6 22 35 0 0 chr1 115392011 115392040 -166801624 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr1 115392542 115392595 -166801069 + AT_rich Low_complexity Low_complexity 1 53 0 1931 244 110 36 chr1 115393131 115393857 -166799807 + L1ME1 LINE L1 5223 5999 -167 4580 88 141 41 chr1 115393861 115394612 -166799052 - LTR12 LTR ERV1 0 826 1 4169 119 8 0 chr1 115394612 115395218 -166798446 - HERV9 LTR ERV1 0 8399 7789 377 131 0 0 chr1 115395214 115395275 -166798389 - HERV9 LTR ERV1 -835 7564 7504 * 6265 144 24 14 chr1 115395276 115396515 -166797149 - HERV9 LTR ERV1 -3445 4954 703 21319 107 14 9 chr1 115396522 115399643 -166794021 - HERV9 LTR ERV1 -5260 3139 1 1572 82 16 13 chr1 115399651 115399876 -166793788 - LTR12 LTR ERV1 -28 686 361 547 302 62 71 chr1 115399928 115400476 -166793188 + L1ME LINE L1 4548 5090 -1056 459 0 0 0 chr1 115400476 115400527 -166793137 + (TA)n Simple_repeat Simple_repeat 1 51 0 547 302 62 71 chr1 115400527 115400650 -166793014 + L1ME LINE L1 5090 5213 -933 439 250 70 29 chr1 115400748 115400920 -166792744 + L1ME LINE L1 5392 5570 -594 306 358 58 40 chr1 115402739 115402861 -166790803 + L1MC4 LINE L1 5420 5547 -2261 2185 172 47 2 chr1 115402861 115403269 -166790395 + MSTB LTR MaLR 1 426 0 306 358 58 40 chr1 115403269 115403319 -166790345 + L1MC4 LINE L1 5547 5595 -2213 427 267 63 36 chr1 115403674 115403895 -166789769 + L1ME3A LINE L1 3933 4159 -1987 383 257 49 7 chr1 115403903 115404047 -166789617 + L1ME3A LINE L1 4471 4620 -1526 306 307 23 0 chr1 115404061 115404149 -166789515 - L1MC4 LINE L1 -1339 6703 6614 * 355 289 0 0 chr1 115404097 115404187 -166789477 + L1MC4 LINE L1 6614 6703 -1339 475 331 171 9 chr1 115404296 115404822 -166788842 + L1ME3A LINE L1 4752 5362 -784 1686 253 56 34 chr1 115405273 115405533 -166788131 + L1ME3A LINE L1 5409 5662 -508 2185 108 57 23 chr1 115405533 115405884 -166787780 + THE1B LTR MaLR 1 363 -1 1686 253 56 34 chr1 115405884 115406361 -166787303 + L1ME3A LINE L1 5662 6162 -8 1844 198 21 5 chr1 115406879 115407263 -166786401 - L1MA9 LINE L1 -368 5944 5555 310 136 45 0 chr1 115407267 115407333 -166786331 + (CATATA)n Simple_repeat Simple_repeat 1 69 0 29 28 0 0 chr1 115407857 115407893 -166785771 + AT_rich Low_complexity Low_complexity 1 36 0 338 235 121 20 chr1 115411490 115411639 -166782025 - MER103 DNA DNA -2 164 1 195 182 109 0 chr1 115411729 115411784 -166781880 + L3 LINE CR1 324 384 -1193 181 256 0 0 chr1 115411984 115412023 -166781641 + MIR SINE MIR 93 131 -131 343 318 168 6 chr1 115412162 115412335 -166781329 + MIR SINE MIR 3 203 -59 709 242 93 34 chr1 115412884 115413176 -166780488 + MLT1H LTR MaLR 229 624 -2 533 68 27 0 chr1 115413701 115413774 -166779890 + MADE1 DNA Mariner 2 76 -4 366 240 13 0 chr1 115415387 115415462 -166778202 + MER21B LTR ERV1 13 88 -775 2442 254 89 35 chr1 115415466 115416211 -166777453 + MER21B LTR ERV1 43 827 -36 1704 165 3 22 chr1 115417312 115417628 -166776036 - AluJo SINE Alu -2 310 1 23 33 0 0 chr1 115418464 115418494 -166775170 + AT_rich Low_complexity Low_complexity 1 30 0 1090 199 10 5 chr1 115418569 115418775 -166774889 - AluJb SINE Alu -24 288 82 24 0 0 0 chr1 115419428 115419452 -166774212 + AT_rich Low_complexity Low_complexity 1 24 0 2004 137 9 12 chr1 115419557 115419893 -166773771 + LTR60 LTR ERV1 14 348 -238 2362 202 12 0 chr1 115419924 115420415 -166773249 - L1PB1 LINE L1 -1187 4959 4463 * 3672 141 3 27 chr1 115420414 115421277 -166772387 + L1PB1 LINE L1 4949 5791 -360 397 74 14 81 chr1 115421277 115421425 -166772239 + (TA)n Simple_repeat Simple_repeat 1 138 0 2159 121 35 0 chr1 115421434 115421780 -166771884 + L1PB1 LINE L1 5791 6148 -3 1327 156 19 23 chr1 115421779 115422036 -166771628 + LTR60 LTR ERV1 331 586 0 476 233 4 131 chr1 115421862 115422107 -166771557 + TAR1 Satellite telomeric 28 241 -1870 * 263 87 109 0 chr1 115422101 115422147 -166771517 + LTR60 LTR ERV1 536 586 0 * 4100 193 20 72 chr1 115422234 115423107 -166770557 - L1MCa LINE L1 -5479 947 31 1998 108 0 7 chr1 115423107 115423453 -166770211 - AluSp SINE Alu 0 344 1 2061 92 58 3 chr1 115423457 115423752 -166769912 - AluSq SINE Alu -2 311 1 4100 193 20 72 chr1 115423752 115423847 -166769817 - L1MCa LINE L1 -6398 28 22 1053 140 0 0 chr1 115424167 115424409 -166769255 + (TA)n Simple_repeat Simple_repeat 1 242 0 4058 86 0 5 chr1 115424735 115425292 -166768372 - MER41A LTR ERV1 0 554 1 29 28 0 0 chr1 115425507 115425543 -166768121 + AT_rich Low_complexity Low_complexity 1 36 0 1808 139 0 0 chr1 115426548 115426814 -166766850 + AluSc SINE Alu 1 266 -43 213 39 0 0 chr1 115426815 115426841 -166766823 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 2201 116 0 0 chr1 115427467 115427778 -166765886 - AluSq SINE Alu -2 311 1 23 33 0 0 chr1 115428486 115428516 -166765148 + AT_rich Low_complexity Low_complexity 1 30 0 226 219 0 0 chr1 115428724 115428765 -166764899 + (TG)n Simple_repeat Simple_repeat 2 42 0 1204 156 151 2 chr1 115429118 115429376 -166764288 + L1PA16 LINE L1 5581 5877 -289 3990 15 53 0 chr1 115429417 115429890 -166763774 - L1PA3 LINE L1 -1660 4486 3989 7360 38 2 0 chr1 115429890 115431549 -166762115 + L1PA3 LINE L1 4492 6152 -3 2163 146 32 22 chr1 115432831 115433202 -166760462 - THE1C LTR MaLR 0 375 1 9013 131 42 48 chr1 115433202 115434791 -166758873 - THE1C-int LTR MaLR -1 1579 1 2467 116 8 26 chr1 115434792 115435173 -166758491 - THE1C LTR MaLR -1 374 1 412 320 113 4 chr1 115435547 115435915 -166757749 + MLT1J LTR MaLR 10 460 -51 1923 141 0 17 chr1 115436272 115436570 -166757094 - AluSx SINE Alu -19 293 1 228 388 158 6 chr1 115436874 115437387 -166756277 - L2 LINE L2 -921 2393 1803 1032 316 33 30 chr1 115437612 115438042 -166755622 + LTR16A LTR ERVL 18 448 -2 342 0 0 0 chr1 115438475 115438513 -166755151 + (CA)n Simple_repeat Simple_repeat 2 39 0 385 245 31 0 chr1 115438607 115438705 -166754959 - LTR16A1 LTR ERVL 0 457 357 22 35 0 0 chr1 115439755 115439784 -166753880 + AT_rich Low_complexity Low_complexity 1 29 0 7047 55 26 0 chr1 115439855 115440723 -166752941 - MER11D LTR ERVK -6 891 1 27 73 0 0 chr1 115441724 115441779 -166751885 + AT_rich Low_complexity Low_complexity 1 55 0 31 44 0 0 chr1 115442175 115442220 -166751444 + AT_rich Low_complexity Low_complexity 1 45 0 651 242 26 26 chr1 115445516 115445706 -166747958 + L1MC4a LINE L1 6403 6592 -1216 1802 221 146 65 chr1 115445755 115446583 -166747081 + L1MC4 LINE L1 6866 7760 -282 251 156 94 0 chr1 115446585 115446681 -166746983 + (TTATA)n Simple_repeat Simple_repeat 3 107 0 452 180 148 74 chr1 115446705 115446961 -166746703 + L1MC4 LINE L1 7766 8040 -2 445 319 76 58 chr1 115447155 115447600 -166746064 + L3 LINE CR1 415 867 -710 880 28 0 0 chr1 115448387 115448494 -166745170 + L1PA5 LINE L1 6048 6154 0 183 42 0 0 chr1 115448862 115448886 -166744778 + (CA)n Simple_repeat Simple_repeat 1 24 0 373 204 9 19 chr1 115449166 115449274 -166744390 + (TATATG)n Simple_repeat Simple_repeat 2 108 0 312 27 0 0 chr1 115449276 115449313 -166744351 + (CA)n Simple_repeat Simple_repeat 2 38 0 479 321 69 58 chr1 115451329 115451809 -166741855 - L1M4 LINE L1 -753 5393 4909 1105 286 145 21 chr1 115451982 115452638 -166741026 - L1ME3A LINE L1 -83 6087 5284 2177 98 0 26 chr1 115452638 115452945 -166740719 + AluSq SINE Alu 1 299 -14 1105 286 145 21 chr1 115452945 115453231 -166740433 - L1ME3A LINE L1 -886 5284 5035 1191 205 66 75 chr1 115453289 115453636 -166740028 + MER2 DNA MER2_type 1 344 -1 294 327 18 0 chr1 115453665 115453778 -166739886 - L1ME3A LINE L1 -1240 4906 4792 979 316 148 17 chr1 115453778 115454243 -166739421 + MER45C DNA AcHobo 428 953 0 8291 39 11 1 chr1 115454393 115456188 -166737476 - L1PA4 LINE L1 -3 6152 4347 391 321 90 19 chr1 115456433 115456645 -166737019 + MIR SINE MIR 36 262 0 25 0 0 0 chr1 115456698 115456723 -166736941 + AT_rich Low_complexity Low_complexity 1 25 0 283 152 15 15 chr1 115457269 115457335 -166736329 + CT-rich Low_complexity Low_complexity 3 68 0 21915 41 4 1 chr1 115457350 115460861 -166732803 - L1PA4 LINE L1 -3 6152 2635 3359 60 0 0 chr1 115460861 115461295 -166732369 + L1PA4 LINE L1 2210 2643 -3503 247 269 75 88 chr1 115462366 115462593 -166731071 - L1ME3A LINE L1 -3 6167 5944 23 0 0 0 chr1 115462795 115462818 -166730846 + AT_rich Low_complexity Low_complexity 1 23 0 313 212 122 14 chr1 115462845 115462927 -166730737 - L1ME3A LINE L1 -597 5569 5483 22 0 0 0 chr1 115462938 115462960 -166730704 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr1 115463128 115463152 -166730512 + (A)n Simple_repeat Simple_repeat 1 24 0 329 312 73 17 chr1 115463152 115463332 -166730332 - MLT1J2 LTR MaLR -201 208 24 357 171 13 13 chr1 115463933 115464009 -166729655 - THE1B LTR MaLR -2 362 287 283 93 0 0 chr1 115464003 115464046 -166729618 - THE1B LTR MaLR -321 43 1 * 2891 149 20 69 chr1 115464046 115464308 -166729356 - LTR26 LTR ERV1 -57 546 327 2079 127 3 0 chr1 115464308 115464607 -166729057 - AluSx SINE Alu -6 306 7 2891 149 20 69 chr1 115464607 115464919 -166728745 - LTR26 LTR ERV1 -276 327 1 906 248 116 41 chr1 115465241 115465906 -166727758 - L1MCc LINE L1 -2435 4506 3792 399 289 42 0 chr1 115465914 115466056 -166727608 - L1M4 LINE L1 -2325 3821 3674 259 324 35 12 chr1 115466089 115466262 -166727402 + L1M4 LINE L1 3341 3517 -2629 5897 171 16 5 chr1 115466450 115468425 -166725239 - L1PB1 LINE L1 -6 6145 4151 1411 193 134 0 chr1 115469144 115469450 -166724214 + MER7A DNA MER2_type 1 345 -1 1808 167 7 94 chr1 115469578 115470003 -166723661 + MLT1B LTR MaLR 3 390 0 310 258 93 40 chr1 115470161 115470312 -166723352 - L2 LINE L2 0 3313 3155 361 286 67 34 chr1 115470415 115470653 -166723011 - L1MCc LINE L1 -4267 2855 2610 1909 167 0 0 chr1 115470654 115470942 -166722722 + AluSx SINE Alu 1 288 -24 21 57 0 0 chr1 115470942 115470977 -166722687 + AT_rich Low_complexity Low_complexity 1 35 0 557 212 152 0 chr1 115471041 115471173 -166722491 + FRAM SINE Alu 16 167 -9 518 316 44 35 chr1 115471179 115471632 -166722032 - L1MCc LINE L1 -4543 2579 2123 1098 259 96 82 chr1 115471634 115472645 -166721019 - L1MCc LINE L1 -4892 1531 824 24 67 0 0 chr1 115473682 115473727 -166719937 + AT_rich Low_complexity Low_complexity 1 45 0 1131 187 21 11 chr1 115474275 115474558 -166719106 - L1MA4 LINE L1 0 6300 6015 931 278 216 14 chr1 115474798 115475169 -166718495 - MLT1E LTR MaLR -29 564 119 336 274 62 7 chr1 115475178 115475324 -166718340 - MLT1E LTR MaLR -439 154 1 2211 95 0 0 chr1 115476062 115476381 -166717283 - AluY SINE Alu 0 319 1 360 292 49 0 chr1 115476981 115477125 -166716539 + L1ME2 LINE L1 6001 6151 -13 3520 233 46 6 chr1 115477359 115478437 -166715227 - L1MD1 LINE L1 -1 6241 5121 665 171 65 65 chr1 115478450 115478535 -166715129 - L1MA4 LINE L1 -9 6291 6207 1704 193 7 10 chr1 115478535 115478836 -166714828 + AluJb SINE Alu 1 300 -12 665 171 65 65 chr1 115478836 115478967 -166714697 - L1MA4 LINE L1 -92 6208 6075 2127 117 125 71 chr1 115478994 115479457 -166714207 + LTR10A LTR ERV1 1 488 -121 39164 67 1 3 chr1 115479463 115485623 -166708041 + L1PA5 LINE L1 3 6149 -5 32 43 0 0 chr1 115485623 115485669 -166707995 + AT_rich Low_complexity Low_complexity 1 46 0 453 150 50 0 chr1 115485670 115485750 -166707914 + LTR10E LTR ERV1 527 610 -23 1950 172 30 18 chr1 115485807 115486242 -166707422 - L1MA4 LINE L1 -183 6117 5678 2910 121 2 0 chr1 115486242 115486672 -166706992 + LTR3 LTR ERVK 1 431 -1 13747 120 17 17 chr1 115486679 115488910 -166704754 + HERVK3 LTR ERVK 40 2269 -4974 5300 49 0 0 chr1 115488912 115489560 -166704104 + L1PA4 LINE L1 5503 6150 -5 524 172 139 7 chr1 115489560 115489711 -166703953 + L1MD3 LINE L1 7812 7982 -13 2493 79 76 3 chr1 115489719 115490100 -166703564 + HERVK3 LTR ERVK 2268 2676 -4567 * 23754 114 12 3 chr1 115490084 115493758 -166699906 + HERVK3 LTR ERVK 3536 7241 -2 2581 165 2 0 chr1 115493760 115494190 -166699474 + LTR3 LTR ERVK 1 431 -1 1915 157 29 0 chr1 115494196 115494539 -166699125 - L1MA4 LINE L1 -621 5684 5332 2088 213 44 19 chr1 115494540 115494673 -166698991 + L1 LINE L1 4730 4858 -1288 1980 142 14 7 chr1 115494673 115494968 -166698696 + AluSg SINE Alu 1 297 -13 2088 213 44 19 chr1 115494968 115495420 -166698244 + L1 LINE L1 4858 5330 -816 11472 162 44 44 chr1 115495512 115498140 -166695524 + L1MA2 LINE L1 1188 3815 -3750 2671 144 7 14 chr1 115498140 115498571 -166695093 + MSTA LTR MaLR 1 428 0 11472 162 44 44 chr1 115498571 115498748 -166694916 + L1MA2 LINE L1 3815 3991 -3574 11498 183 26 12 chr1 115498752 115502540 -166691124 + L1MA2 LINE L1 3885 7723 0 2025 251 49 21 chr1 115502576 115503430 -166690234 - L1M4 LINE L1 -1091 5055 4178 542 187 15 24 chr1 115503430 115503578 -166690086 - MLT1C LTR MaLR -193 197 59 1770 283 78 9 chr1 115503624 115504165 -166689499 + L1MDa LINE L1 196 773 -5767 261 289 154 45 chr1 115505371 115505527 -166688137 - Charlie8 DNA MER1_type -2243 174 2 1656 204 30 50 chr1 115506572 115507174 -166686490 + pTR5 LTR ERV1 743 1332 -1106 4553 114 55 65 chr1 115507191 115508021 -166685643 + LTR12 LTR ERV1 5 826 0 7064 167 14 10 chr1 115508021 115509479 -166684185 - L1P LINE L1 -2597 3549 2087 923 239 8 21 chr1 115509488 115509731 -166683933 - L1PA12 LINE L1 -7332 249 10 201 296 0 0 chr1 115509760 115509804 -166683860 + L2 LINE L2 3167 3210 -62 1532 189 14 82 chr1 115510248 115510661 -166683003 - MLT1B LTR MaLR -5 385 1 454 247 34 39 chr1 115511184 115511362 -166682302 + MLT1H LTR MaLR 27 203 -346 3699 165 16 46 chr1 115511688 115512421 -166681243 + MER50 LTR ERV1 1 711 -23 2953 58 0 5 chr1 115512641 115513035 -166680629 + L1PA5 LINE L1 5654 6045 -109 958 41 8 8 chr1 115513135 115513298 -166680366 + L1PA5 LINE L1 6018 6180 0 2696 39 0 0 chr1 115513500 115513810 -166679854 - AluY SINE Alu -1 310 1 2379 148 28 126 chr1 115515019 115515703 -166677961 - L1MA4A LINE L1 -5 6298 5682 2277 100 3 3 chr1 115516403 115516704 -166676960 + AluSc SINE Alu 1 301 -8 422 293 52 33 chr1 115517367 115517579 -166676085 - L1ME4a LINE L1 -237 5884 5669 2799 185 60 40 chr1 115518133 115518837 -166674827 - LTR8A LTR ERV1 0 727 10 311 304 0 24 chr1 115518907 115519032 -166674632 - L2 LINE L2 -817 2497 2376 741 193 0 15 chr1 115519177 115519312 -166674352 + AluSq/x SINE Alu 1 133 -180 27 49 0 0 chr1 115519805 115519846 -166673818 + AT_rich Low_complexity Low_complexity 1 41 0 2095 125 3 0 chr1 115519853 115520148 -166673516 + AluSp SINE Alu 1 296 -17 23 33 0 0 chr1 115521106 115521136 -166672528 + AT_rich Low_complexity Low_complexity 1 30 0 2177 170 6 8 chr1 115521142 115521507 -166672157 - THE1B LTR MaLR 0 364 1 9736 136 11 30 chr1 115521507 115523118 -166670546 - THE1C-int LTR MaLR 0 1580 1 2221 148 27 0 chr1 115523118 115523483 -166670181 - THE1C LTR MaLR 0 375 1 186 43 0 0 chr1 115523702 115523725 -166669939 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1758 164 62 34 chr1 115524167 115524521 -166669143 - THE1B LTR MaLR 0 364 1 10979 94 25 16 chr1 115524521 115524757 -166668907 - THE1B-int LTR MaLR 0 1580 1348 1919 135 47 0 chr1 115524757 115525053 -166668611 + AluSg SINE Alu 1 310 0 10979 94 25 16 chr1 115525053 115526377 -166667287 - THE1B-int LTR MaLR -232 1348 6 1787 135 51 73 chr1 115526383 115526753 -166666911 - THE1B LTR MaLR -1 363 2 1345 280 99 34 chr1 115527616 115527988 -166665676 + MER69 DNA AcHobo 10 427 -799 2336 168 34 2 chr1 115527988 115528400 -166665264 + MSTA LTR MaLR 1 425 -3 1345 280 99 34 chr1 115528400 115528552 -166665112 + MER69 DNA AcHobo 427 568 -658 734 215 207 26 chr1 115528550 115528941 -166664723 + MER69 DNA AcHobo 2010 2471 -55 * 252 0 0 0 chr1 115531569 115531597 -166662067 + (TA)n Simple_repeat Simple_repeat 2 29 0 1885 148 23 0 chr1 115531599 115531902 -166661762 - AluSx SINE Alu -2 310 1 227 338 14 113 chr1 115533139 115533281 -166660383 + MIR3 SINE MIR 13 140 -68 209 310 99 0 chr1 115533575 115533646 -166660018 + L2 LINE L2 3191 3268 -4 238 319 97 18 chr1 115536578 115536691 -166656973 + L2 LINE L2 2915 3036 -236 217 418 14 14 chr1 115536728 115536869 -166656795 + MIR SINE MIR 24 164 -98 21 0 0 0 chr1 115536893 115536914 -166656750 + AT_rich Low_complexity Low_complexity 1 21 0 1236 118 94 5 chr1 115537192 115537394 -166656270 + MER39B LTR ERV1 1 220 -433 3202 161 36 9 chr1 115537394 115537973 -166655691 + MER50 LTR ERV1 1 595 -139 1761 198 88 29 chr1 115538013 115538433 -166655231 + MER39 LTR ERV1 263 707 0 246 213 88 73 chr1 115538659 115538795 -166654869 - L1ME4a LINE L1 -2 6119 5982 24 53 0 0 chr1 115540564 115540602 -166653062 + AT_rich Low_complexity Low_complexity 1 38 0 1881 177 5 72 chr1 115540724 115541142 -166652522 + MLT1B LTR MaLR 1 390 0 23 0 0 0 chr1 115542356 115542379 -166651285 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr1 115542475 115542502 -166651162 + (TG)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr1 115544463 115544499 -166649165 + AT_rich Low_complexity Low_complexity 1 36 0 1405 216 3 28 chr1 115544684 115545004 -166648660 + AluJo SINE Alu 1 312 0 255 183 42 84 chr1 115545627 115545698 -166647966 + MIR SINE MIR 117 184 -78 183 100 0 0 chr1 115547169 115547199 -166646465 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1566 195 3 3 chr1 115547343 115547635 -166646029 + AluJb SINE Alu 1 292 -20 1145 124 0 0 chr1 115547867 115548028 -166645636 - AluSg/x SINE Alu -12 300 140 225 308 47 19 chr1 115549119 115549226 -166644438 - MIR SINE MIR -14 248 139 500 333 16 16 chr1 115549227 115549410 -166644254 - MIR SINE MIR -68 194 12 25 0 0 0 chr1 115550527 115550552 -166643112 + AT_rich Low_complexity Low_complexity 1 25 0 47 44 0 0 chr1 115551276 115551344 -166642320 + AT_rich Low_complexity Low_complexity 1 68 0 242 254 15 0 chr1 115551435 115551502 -166642162 + (TA)n Simple_repeat Simple_repeat 2 69 0 23 33 0 0 chr1 115551695 115551725 -166641939 + AT_rich Low_complexity Low_complexity 1 30 0 40 21 0 0 chr1 115551984 115552031 -166641633 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr1 115552412 115552440 -166641224 + AT_rich Low_complexity Low_complexity 1 28 0 547 259 14 21 chr1 115553014 115553157 -166640507 + L1PB4 LINE L1 6013 6154 -2 286 148 130 0 chr1 115554052 115554106 -166639558 + MSTD LTR MaLR 63 123 -309 2077 123 3 3 chr1 115554129 115554429 -166639235 + AluSq SINE Alu 1 300 -13 621 263 63 0 chr1 115554442 115554617 -166639047 + MSTD LTR MaLR 200 385 -11 26 82 0 0 chr1 115555571 115555632 -166638032 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr1 115555777 115555800 -166637864 + AT_rich Low_complexity Low_complexity 1 23 0 212 214 22 22 chr1 115555906 115555995 -166637669 + (TA)n Simple_repeat Simple_repeat 1 89 0 1639 157 4 4 chr1 115556960 115557227 -166636437 - AluJb SINE Alu -18 294 28 595 28 0 0 chr1 115557227 115557298 -166636366 - L1PA4 LINE L1 -1152 4994 4924 7426 34 3 0 chr1 115557298 115558474 -166635190 + L1PA4 LINE L1 4974 6152 -3 307 141 31 0 chr1 115558489 115558553 -166635111 + GA-rich Low_complexity Low_complexity 3 68 0 25 0 0 0 chr1 115559099 115559124 -166634540 + AT_rich Low_complexity Low_complexity 1 25 0 391 321 90 19 chr1 115559177 115559389 -166634275 - MIR SINE MIR 0 262 36 1524 195 35 7 chr1 115559504 115559791 -166633873 - AluJb SINE Alu -17 295 1 198 103 0 0 chr1 115559801 115559830 -166633834 + (T)n Simple_repeat Simple_repeat 1 29 0 21 57 0 0 chr1 115560706 115560741 -166632923 + AT_rich Low_complexity Low_complexity 1 35 0 185 178 22 0 chr1 115560754 115560799 -166632865 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 513 321 91 25 chr1 115560813 115561831 -166631833 - L1ME3A LINE L1 -293 5877 4787 2625 150 9 2 chr1 115562126 115562553 -166631111 + MSTB1 LTR MaLR 1 430 -2 28 48 0 0 chr1 115562978 115563020 -166630644 + AT_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 115563438 115563472 -166630192 + AT_rich Low_complexity Low_complexity 1 34 0 297 311 68 0 chr1 115563834 115563937 -166629727 - MIR SINE MIR -139 123 14 26 0 0 0 chr1 115564313 115564339 -166629325 + AT_rich Low_complexity Low_complexity 1 26 0 2486 122 14 0 chr1 115565735 115566105 -166627559 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr1 115567525 115567558 -166626106 + AT_rich Low_complexity Low_complexity 1 33 0 639 194 118 65 chr1 115567974 115568008 -166625656 - MER20 DNA MER1_type -4 215 184 1528 94 0 10 chr1 115568008 115568211 -166625453 - AluSc SINE Alu -21 288 88 639 194 118 65 chr1 115568211 115568362 -166625302 - MER20 DNA MER1_type -35 184 20 23 0 0 0 chr1 115568871 115568894 -166624770 + AT_rich Low_complexity Low_complexity 1 23 0 1742 218 147 8 chr1 115570122 115570631 -166623033 + L1P LINE L1 4609 5188 -958 21 0 0 0 chr1 115570898 115570919 -166622745 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr1 115572472 115572511 -166621153 + AT_rich Low_complexity Low_complexity 1 39 0 210 337 30 20 chr1 115573052 115573153 -166620511 + MIR SINE MIR 58 159 -103 277 248 40 172 chr1 115575151 115575349 -166618315 - MER5B DNA MER1_type 0 178 7 2463 34 0 10 chr1 115575495 115575788 -166617876 - AluY SINE Alu -21 290 1 33 73 0 0 chr1 115576673 115576741 -166616923 + AT_rich Low_complexity Low_complexity 1 68 0 2229 65 0 42 chr1 115577016 115577325 -166616339 + AluY SINE Alu 1 296 -15 22 0 0 0 chr1 115578065 115578087 -166615577 + AT_rich Low_complexity Low_complexity 1 22 0 455 226 50 88 chr1 115578249 115578488 -166615176 + MER112 DNA MER1_type 19 248 -12 24 0 0 0 chr1 115579159 115579183 -166614481 + AT_rich Low_complexity Low_complexity 1 24 0 32 57 0 0 chr1 115580206 115580259 -166613405 + AT_rich Low_complexity Low_complexity 1 53 0 711 78 0 3 chr1 115580524 115580757 -166612907 + AluY SINE Alu 1 306 -5 42003 38 24 1 chr1 115581192 115587203 -166606461 - L1PA2 LINE L1 -3 6152 4 3640 216 85 83 chr1 115588908 115590356 -166603308 + Charlie1a DNA MER1_type 5 1455 0 1810 179 80 32 chr1 115590513 115590949 -166602715 + MSTB2 LTR MaLR 1 457 0 1423 179 26 33 chr1 115592521 115592823 -166600841 + AluJo SINE Alu 13 312 0 38 0 0 0 chr1 115592891 115592929 -166600735 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 115593097 115593121 -166600543 + AT_rich Low_complexity Low_complexity 1 24 0 30 27 0 0 chr1 115594083 115594120 -166599544 + AT_rich Low_complexity Low_complexity 1 37 0 371 328 84 65 chr1 115594184 115595005 -166598659 + L2 LINE L2 2421 3264 -49 214 341 42 55 chr1 115595895 115596112 -166597552 - MIR SINE MIR 0 262 49 354 61 0 0 chr1 115596526 115596575 -166597089 + (CA)n Simple_repeat Simple_repeat 2 50 0 209 299 52 37 chr1 115596658 115596792 -166596872 + L2 LINE L2 2151 2286 -1028 1372 205 129 17 chr1 115598153 115598333 -166595331 + MSTD LTR MaLR 1 159 -237 342 0 0 0 chr1 115598333 115598371 -166595293 + (TC)n Simple_repeat Simple_repeat 2 39 0 1372 205 129 17 chr1 115598371 115598546 -166595118 + MSTD LTR MaLR 159 396 0 4347 28 0 0 chr1 115598905 115599413 -166594251 + L1PA3 LINE L1 5637 6144 -11 25 99 0 0 chr1 115600979 115601060 -166592604 + AT_rich Low_complexity Low_complexity 1 81 0 291 342 6 41 chr1 115601321 115601482 -166592182 - MIR SINE MIR -67 141 39 37 23 0 0 chr1 115601828 115601872 -166591792 + AT_rich Low_complexity Low_complexity 1 44 0 1959 143 23 47 chr1 115603643 115604027 -166589637 + THE1C LTR MaLR 1 375 0 1825 58 0 137 chr1 115604309 115604666 -166588998 + AluY SINE Alu 2 313 0 37 23 0 0 chr1 115604884 115604928 -166588736 + AT_rich Low_complexity Low_complexity 1 44 0 2253 101 0 0 chr1 115605001 115605289 -166588375 - AluSc SINE Alu -21 288 1 21 36 0 0 chr1 115605609 115605637 -166588027 + AT_rich Low_complexity Low_complexity 1 28 0 207 287 0 93 chr1 115606107 115606236 -166587428 + L2 LINE L2 3195 3311 -2 223 282 141 39 chr1 115606239 115606395 -166587269 + MIR SINE MIR 59 230 -32 196 306 0 0 chr1 115606435 115606497 -166587167 + MIR SINE MIR 193 254 -8 2181 112 3 0 chr1 115607454 115607757 -166585907 + AluSq SINE Alu 1 304 -9 399 289 15 22 chr1 115609496 115609631 -166584033 - MER112 DNA MER1_type -2 258 125 29 28 0 0 chr1 115609787 115609823 -166583841 + AT_rich Low_complexity Low_complexity 1 36 0 185 295 77 77 chr1 115610670 115610826 -166582838 + MIR SINE MIR 91 246 -16 22 103 0 0 chr1 115614315 115614393 -166579271 + AT_rich Low_complexity Low_complexity 1 78 0 209 279 0 0 chr1 115614903 115614971 -166578693 + (TA)n Simple_repeat Simple_repeat 2 69 0 329 301 210 55 chr1 115616368 115616587 -166577077 + L3b LINE CR1 1272 1524 -59 441 148 0 0 chr1 115617477 115617558 -166576106 + (TG)n Simple_repeat Simple_repeat 1 81 0 229 235 0 29 chr1 115619584 115619652 -166574012 - L1MC4 LINE L1 -1343 6699 6634 218 274 93 80 chr1 115619652 115619889 -166573775 + L2 LINE L2 2178 2417 -897 2703 32 0 0 chr1 115620131 115620442 -166573222 - AluY SINE Alu 0 311 1 201 162 0 0 chr1 115622943 115622980 -166570684 + (TA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr1 115623208 115623230 -166570434 + AT_rich Low_complexity Low_complexity 1 22 0 1831 85 55 4 chr1 115623638 115623909 -166569755 + AluSc SINE Alu 1 285 -24 184 30 61 0 chr1 115623912 115623945 -166569719 + A-rich Low_complexity Low_complexity 2 36 0 27 0 0 0 chr1 115624391 115624418 -166569246 + AT_rich Low_complexity Low_complexity 1 27 0 221 204 0 19 chr1 115625858 115625912 -166567752 + (TA)n Simple_repeat Simple_repeat 1 53 0 558 200 135 24 chr1 115626861 115627031 -166566633 - MER5A DNA MER1_type 0 189 1 2466 84 0 0 chr1 115629199 115629509 -166564155 - AluSx SINE Alu -2 310 1 440 181 94 31 chr1 115629617 115629744 -166563920 + MER53 DNA DNA 37 171 -18 22 35 0 0 chr1 115631331 115631360 -166562304 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 115632101 115632123 -166561541 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 572 216 26 0 chr1 115632130 115632246 -166561418 - FLAM_A SINE Alu -14 119 1 38 51 0 0 chr1 115633124 115633183 -166560481 + AT_rich Low_complexity Low_complexity 1 59 0 432 310 33 43 chr1 115633608 115633792 -166559872 + MER5A DNA MER1_type 2 183 -6 23 0 0 0 chr1 115634872 115634895 -166558769 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 115635213 115635241 -166558423 + AT_rich Low_complexity Low_complexity 1 28 0 1079 241 158 37 chr1 115636199 115636609 -166557055 + MLT1D LTR MaLR 12 471 -34 22 103 0 0 chr1 115637207 115637285 -166556379 + AT_rich Low_complexity Low_complexity 1 78 0 3554 25 39 0 chr1 115639129 115639567 -166554097 + L1PA4 LINE L1 5699 6153 -2 328 332 64 10 chr1 115639833 115639987 -166553677 + MER5B DNA MER1_type 3 176 -13 185 156 0 22 chr1 115640241 115640286 -166553378 + (TA)n Simple_repeat Simple_repeat 2 45 0 3046 168 48 57 chr1 115640780 115641514 -166552150 + LTR8A LTR ERV1 1 727 0 219 69 0 0 chr1 115642250 115642279 -166551385 + (TG)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr1 115642468 115642495 -166551169 + AT_rich Low_complexity Low_complexity 1 27 0 1607 193 7 0 chr1 115642912 115643224 -166550440 + AluJb SINE Alu 1 314 0 25 31 0 0 chr1 115643325 115643357 -166550307 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 115643420 115643441 -166550223 + AT_rich Low_complexity Low_complexity 1 21 0 2014 127 0 0 chr1 115643759 115644065 -166549599 + AluSx SINE Alu 1 306 0 26 0 0 0 chr1 115645090 115645116 -166548548 + AT_rich Low_complexity Low_complexity 1 26 0 1028 199 63 72 chr1 115646313 115646559 -166547105 + MER2 DNA MER2_type 1 245 -99 1536 196 14 11 chr1 115646559 115646845 -166546819 - AluJo SINE Alu -23 289 3 1028 199 63 72 chr1 115646845 115646945 -166546719 + MER2 DNA MER2_type 245 344 0 2051 139 0 0 chr1 115647472 115647773 -166545891 - AluSq SINE Alu -10 303 3 320 210 208 15 chr1 115648457 115648577 -166545087 - L1MD2 LINE L1 -269 5905 5769 2325 151 55 0 chr1 115649020 115649424 -166544240 + MSTA LTR MaLR 1 426 -2 1803 172 13 34 chr1 115649572 115649955 -166543709 - THE1C LTR MaLR 0 375 1 32 26 0 0 chr1 115653177 115653216 -166540448 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 115653289 115653317 -166540347 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr1 115654388 115654447 -166539217 + AT_rich Low_complexity Low_complexity 1 59 0 2801 227 50 46 chr1 115655199 115656097 -166537567 + L1MB7 LINE L1 5278 6179 -5 21 36 0 0 chr1 115659359 115659387 -166534277 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 115659658 115659686 -166533978 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr1 115660701 115660730 -166532934 + (CAT)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr1 115660976 115660999 -166532665 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2336 64 30 0 chr1 115661316 115661611 -166532053 - AluY SINE Alu -7 304 1 325 322 76 17 chr1 115661837 115661955 -166531709 + L2 LINE L2 3112 3236 -36 23 0 0 0 chr1 115662289 115662312 -166531352 + AT_rich Low_complexity Low_complexity 1 23 0 1264 159 0 10 chr1 115662361 115662568 -166531096 + AluJb SINE Alu 3 207 -105 2257 88 3 0 chr1 115663601 115663896 -166529768 - AluSx SINE Alu -16 296 1 197 324 89 39 chr1 115663924 115664103 -166529561 + MER5A DNA MER1_type 1 188 -1 21 0 0 0 chr1 115664261 115664282 -166529382 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 115664347 115664368 -166529296 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr1 115664595 115664642 -166529022 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr1 115665085 115665121 -166528543 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr1 115666353 115666411 -166527253 + AT_rich Low_complexity Low_complexity 1 58 0 853 183 129 3 chr1 115718368 115718592 -166475072 + L1MB5 LINE L1 5673 5888 -286 4295 169 60 6 chr1 115718719 115719203 -166474461 - MER6 DNA MER2_type 0 865 318 201 74 0 0 chr1 115719203 115719230 -166474434 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4295 169 60 6 chr1 115719230 115719565 -166474099 - MER6 DNA MER2_type -547 318 2 245 179 164 0 chr1 115719813 115719880 -166473784 - MIR SINE MIR -20 242 165 2363 43 0 0 chr1 115720378 115720683 -166472981 - AluY SINE Alu 0 306 2 211 352 107 47 chr1 115721513 115721746 -166471918 + L2 LINE L2 2837 3083 -189 552 266 32 25 chr1 115722185 115722343 -166471321 + MIR SINE MIR 36 194 -68 1186 201 81 4 chr1 115722412 115722671 -166470993 + MER58B DNA MER1_type 39 317 -24 574 261 85 7 chr1 115723065 115723218 -166470446 + MER5B DNA MER1_type 7 171 -7 194 396 43 43 chr1 115723516 115723655 -166470009 + L2 LINE L2 3134 3272 0 2053 103 7 0 chr1 115723818 115724126 -166469538 + AluSg SINE Alu 7 316 0 268 341 212 0 chr1 115724515 115724685 -166468979 + MIR SINE MIR 43 248 -14 14879 141 29 33 chr1 115726155 115728883 -166464781 + Tigger2 DNA MER2_type 2 2717 -1 395 360 30 34 chr1 115729318 115729582 -166464082 - L2 LINE L2 -175 3138 2876 1561 284 55 27 chr1 115729903 115730050 -166463614 - L2 LINE L2 -459 2855 2714 418 141 0 0 chr1 115730050 115730121 -166463543 - L1MC2 LINE L1 -13 6331 6261 1561 284 55 27 chr1 115730121 115730610 -166463054 - L2 LINE L2 -600 2714 2201 216 286 117 0 chr1 115731775 115731852 -166461812 + L2 LINE L2 3203 3288 -25 243 349 38 38 chr1 115732535 115732641 -166461023 - L2 LINE L2 -1 3312 3207 256 293 0 0 chr1 115733027 115733085 -166460579 - L2 LINE L2 -5 3308 3251 212 59 29 0 chr1 115733424 115733458 -166460206 + (TA)n Simple_repeat Simple_repeat 1 35 0 216 296 113 35 chr1 115733968 115734083 -166459581 - L2 LINE L2 -15 3257 3134 695 320 9 4 chr1 115734714 115734939 -166458725 + MIR SINE MIR 13 238 -24 23 33 0 0 chr1 115737278 115737308 -166456356 + AT_rich Low_complexity Low_complexity 1 30 0 208 277 96 48 chr1 115738001 115738084 -166455580 + MIR3 SINE MIR 107 193 -15 23 92 0 0 chr1 115739240 115739305 -166454359 + AT_rich Low_complexity Low_complexity 1 65 0 212 250 0 0 chr1 115741073 115741117 -166452547 + GA-rich Low_complexity Low_complexity 1 44 0 212 174 0 22 chr1 115742515 115742561 -166451103 + C-rich Low_complexity Low_complexity 4 48 0 21 0 0 0 chr1 115743051 115743072 -166450592 + AT_rich Low_complexity Low_complexity 1 21 0 221 274 16 0 chr1 115743663 115743725 -166449939 + L2 LINE L2 3250 3312 -1 315 0 0 0 chr1 115745776 115745811 -166447853 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 24 77 0 0 chr1 115746986 115747038 -166446626 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr1 115747971 115748002 -166445662 + AT_rich Low_complexity Low_complexity 1 31 0 2341 81 0 3 chr1 115749482 115749779 -166443885 + AluY SINE Alu 1 296 -15 180 0 0 0 chr1 115750621 115750641 -166443023 + (TG)n Simple_repeat Simple_repeat 2 21 0 487 307 115 59 chr1 115750722 115751113 -166442551 - MLT1H1 LTR MaLR -75 480 68 274 243 257 33 chr1 115751187 115751401 -166442263 - MLT1H1-int LTR MaLR -38 1697 1436 183 315 37 0 chr1 115752121 115752175 -166441489 - L3 LINE CR1 -450 1127 1072 2745 229 25 58 chr1 115752226 115752911 -166440753 + MER21B LTR ERV1 3 664 -199 26 0 0 0 chr1 115752935 115752961 -166440703 + AT_rich Low_complexity Low_complexity 1 26 0 2280 84 3 0 chr1 115754080 115754376 -166439288 - AluSx SINE Alu -15 297 1 255 292 81 62 chr1 115754404 115754565 -166439099 - MER5A DNA MER1_type 0 189 26 21 0 0 0 chr1 115754741 115754762 -166438902 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 115754827 115754848 -166438816 + AT_rich Low_complexity Low_complexity 1 21 0 32 43 0 0 chr1 115755075 115755121 -166438543 + AT_rich Low_complexity Low_complexity 1 46 0 29 28 0 0 chr1 115755564 115755600 -166438064 + AT_rich Low_complexity Low_complexity 1 36 0 30 69 0 0 chr1 115756831 115756889 -166436775 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr1 115759139 115759168 -166434496 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 115760094 115760123 -166433541 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr1 115760601 115760650 -166433014 + AT_rich Low_complexity Low_complexity 1 49 0 261 361 21 0 chr1 115762537 115762634 -166431030 + L2 LINE L2 3214 3312 -1 7599 29 0 4 chr1 115762962 115764266 -166429398 - L1PA3 LINE L1 -2 6153 4852 657 159 29 29 chr1 115764366 115764504 -166429160 + L1PA3 LINE L1 5781 5918 -237 1942 113 3 34 chr1 115764794 115765114 -166428550 - AluY SINE Alu -1 310 1 23 0 0 0 chr1 115765168 115765191 -166428473 + AT_rich Low_complexity Low_complexity 1 23 0 1921 114 44 17 chr1 115766317 115766615 -166427049 - AluSp SINE Alu -6 307 2 1116 186 5 27 chr1 115767091 115767311 -166426353 - AluJo SINE Alu -18 294 80 2143 113 3 0 chr1 115768445 115768738 -166424926 - AluSx SINE Alu -18 294 1 764 281 109 99 chr1 115769090 115770033 -166423631 + L1MB5 LINE L1 5 957 -5585 * 2435 229 55 21 chr1 115770032 115770924 -166422740 + L1MB5 LINE L1 5089 5971 -701 1389 167 49 4 chr1 115770924 115771187 -166422477 - AluJo SINE Alu -3 309 35 2990 230 29 1 chr1 115771214 115771880 -166421784 + L1MB5 LINE L1 5983 6666 -6 1434 245 74 96 chr1 115771883 115773078 -166420586 + Charlie7 DNA MER1_type 879 2046 -566 255 231 127 88 chr1 115773156 115773464 -166420200 + Charlie7 DNA MER1_type 2203 2522 -90 285 360 34 28 chr1 115773586 115773764 -166419900 - HERV16 LTR ERVL -876 4609 4431 527 349 70 19 chr1 115773825 115774195 -166419469 - HERV16 LTR ERVL -1369 4395 4007 1932 320 19 27 chr1 115774270 115774998 -166418666 - HERV16 LTR ERVL -1905 3091 2454 705 280 85 44 chr1 115775062 115775380 -166418284 - HERV16 LTR ERVL -2705 2291 1961 573 320 48 51 chr1 115775413 115775864 -166417800 - HERV16 LTR ERVL -3172 1824 1310 4355 103 28 28 chr1 115775868 115776103 -166417561 + L1PA13 LINE L1 5058 5291 -872 2787 10 0 0 chr1 115776103 115776412 -166417252 + AluYa5 SINE Alu 1 309 -2 4355 103 28 28 chr1 115776412 115777081 -166416583 + L1PA13 LINE L1 5291 5967 -196 1313 77 28 0 chr1 115777166 115777348 -166416316 + L1PA13 LINE L1 5977 6163 0 951 286 53 26 chr1 115777362 115777666 -166415998 - HERV16 LTR ERVL -3671 1325 1014 1362 214 142 10 chr1 115779231 115779619 -166414045 - L1MB7 LINE L1 -28 6156 5718 * 2922 261 71 42 chr1 115779595 115780148 -166413516 - L1M4c LINE L1 -4163 2662 2127 582 237 8 8 chr1 115780148 115780279 -166413385 - FLAM_A SINE Alu -2 131 1 2922 261 71 42 chr1 115780279 115781621 -166412043 - L1M4c LINE L1 -4698 2127 549 269 305 142 58 chr1 115782416 115782606 -166411058 + MIR3 SINE MIR 2 207 -1 453 71 24 12 chr1 115782670 115782754 -166410910 + (TA)n Simple_repeat Simple_repeat 2 86 0 28 0 0 0 chr1 115782776 115782804 -166410860 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr1 115783477 115783508 -166410156 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr1 115783600 115783635 -166410029 + (TG)n Simple_repeat Simple_repeat 2 36 0 1780 150 0 24 chr1 115784528 115784822 -166408842 + AluSx SINE Alu 1 287 -25 210 37 0 0 chr1 115784822 115784849 -166408815 + (GA)n Simple_repeat Simple_repeat 2 28 0 224 370 20 79 chr1 115784997 115785402 -166408262 - L2 LINE L2 -563 2751 2371 2080 173 16 10 chr1 115785686 115786074 -166407590 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr1 115786606 115786641 -166407023 + AT_rich Low_complexity Low_complexity 1 35 0 442 226 122 0 chr1 115787150 115787331 -166406333 - Charlie5 DNA MER1_type -82 2530 2328 25 0 0 0 chr1 115787343 115787368 -166406296 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 115787807 115787837 -166405827 + AT_rich Low_complexity Low_complexity 1 30 0 319 334 108 31 chr1 115788787 115789110 -166404554 + LTR33 LTR ERVL 16 363 -158 301 112 16 75 chr1 115789264 115789452 -166404212 + (TA)n Simple_repeat Simple_repeat 1 177 0 260 97 26 61 chr1 115789512 115789626 -166404038 + (TA)n Simple_repeat Simple_repeat 2 111 0 402 275 58 0 chr1 115789776 115789896 -166403768 + L2 LINE L2 3187 3313 0 22 0 0 0 chr1 115790952 115790974 -166402690 + AT_rich Low_complexity Low_complexity 1 22 0 767 298 84 88 chr1 115791068 115791790 -166401874 - L2 LINE L2 0 3313 2591 225 290 0 0 chr1 115791798 115791860 -166401804 - MIR SINE MIR 0 262 201 22 56 0 0 chr1 115791933 115791969 -166401695 + AT_rich Low_complexity Low_complexity 1 36 0 43820 42 4 1 chr1 115791969 115798098 -166395566 - L1PA4 LINE L1 -3 6152 3 180 0 0 0 chr1 115800920 115800940 -166392724 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2061 134 3 7 chr1 115800968 115801273 -166392391 + AluSq SINE Alu 1 304 -9 621 343 47 4 chr1 115801276 115801509 -166392155 - MIR SINE MIR -10 252 10 997 113 238 0 chr1 115801985 115802170 -166391494 - MER30 DNA MER1_type -1 229 1 331 291 87 8 chr1 115802244 115802371 -166391293 + L1ME1 LINE L1 488 624 -5906 185 0 40 0 chr1 115802403 115802428 -166391236 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 296 331 55 12 chr1 115802554 115802717 -166390947 + L1ME1 LINE L1 781 950 -5580 1113 217 91 4 chr1 115802793 115803046 -166390618 + L1MC1 LINE L1 314 588 -5838 11043 135 42 80 chr1 115803046 115805280 -166388384 - Tigger1 DNA MER2_type 0 2418 270 817 189 20 0 chr1 115805301 115805454 -166388210 + Tigger1 DNA MER2_type 123 278 -2140 * 991 173 31 11 chr1 115805450 115805641 -166388023 - Tigger1 DNA MER2_type -2219 199 5 4598 161 89 22 chr1 115805723 115807165 -166386499 + L1MC1 LINE L1 573 2204 -4222 825 170 0 20 chr1 115807174 115807327 -166386337 + AluJo SINE Alu 1 150 -162 8281 230 70 25 chr1 115807350 115810903 -166382761 + L1MC1 LINE L1 2361 6128 -485 2303 78 7 7 chr1 115810903 115811210 -166382454 + AluY SINE Alu 1 307 -4 8281 230 70 25 chr1 115811210 115811715 -166381949 + L1MC1 LINE L1 6128 6609 -4 2320 71 0 10 chr1 115811733 115812041 -166381623 + AluY SINE Alu 1 305 -6 261 289 70 16 chr1 115812061 115812248 -166381416 + L1ME1 LINE L1 1109 1305 -5225 * 960 280 86 50 chr1 115812233 115813164 -166380500 + L1ME1 LINE L1 1571 2534 -4006 6513 268 71 20 chr1 115813326 115816785 -166376879 + L1ME1 LINE L1 2587 6232 -328 282 29 0 0 chr1 115816785 115816820 -166376844 + (TAA)n Simple_repeat Simple_repeat 2 36 0 6513 268 71 20 chr1 115816820 115816867 -166376797 + L1ME1 LINE L1 6232 6275 -285 258 277 88 10 chr1 115817033 115817137 -166376527 + L1MB8 LINE L1 5891 6004 -168 643 207 24 0 chr1 115817141 115817305 -166376359 + L1MA10 LINE L1 6167 6334 0 243 0 0 0 chr1 115818043 115818070 -166375594 + (T)n Simple_repeat Simple_repeat 1 27 0 233 128 21 0 chr1 115818426 115818473 -166375191 + (TA)n Simple_repeat Simple_repeat 1 48 0 258 359 123 10 chr1 115818477 115818672 -166374992 - MIR SINE MIR -44 218 2 26 30 0 0 chr1 115821387 115821420 -166372244 + AT_rich Low_complexity Low_complexity 1 33 0 21 104 0 0 chr1 115821635 115821712 -166371952 + AT_rich Low_complexity Low_complexity 1 77 0 432 0 0 0 chr1 115821772 115821820 -166371844 + (TA)n Simple_repeat Simple_repeat 2 49 0 2103 91 0 14 chr1 115822383 115822709 -166370955 - AluSx SINE Alu 0 322 1 21 0 0 0 chr1 115826154 115826175 -166367489 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 115826241 115826262 -166367402 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 115826498 115826526 -166367138 + AT_rich Low_complexity Low_complexity 1 28 0 220 231 19 0 chr1 115826597 115826668 -166366996 + (TATG)n Simple_repeat Simple_repeat 1 72 0 334 289 173 106 chr1 115828487 115828885 -166364779 + L2 LINE L2 2886 3310 -3 226 244 0 0 chr1 115829028 115829073 -166364591 + L2 LINE L2 3265 3309 -4 21 0 0 0 chr1 115829210 115829231 -166364433 + AT_rich Low_complexity Low_complexity 1 21 0 701 272 60 9 chr1 115829786 115830003 -166363661 + MIR SINE MIR 20 247 -15 759 288 119 27 chr1 115830037 115830602 -166363062 + L2 LINE L2 2701 3313 0 279 301 103 24 chr1 115831935 115832148 -166361516 + L1ME LINE L1 5624 5853 -268 190 357 43 0 chr1 115832238 115832308 -166361356 + MIR SINE MIR 1 73 -189 2270 159 28 4 chr1 115832311 115832862 -166360802 + L1M2 LINE L1 5136 5703 -597 783 156 0 0 chr1 115832857 115832985 -166360679 + L1M2 LINE L1 5616 5743 -557 * 220 321 98 0 chr1 115832985 115833097 -166360567 + MIR SINE MIR 70 192 -70 27 62 0 0 chr1 115833150 115833198 -166360466 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr1 115833415 115833445 -166360219 + AT_rich Low_complexity Low_complexity 1 30 0 245 277 0 0 chr1 115833882 115833947 -166359717 + MIR SINE MIR 90 154 -108 201 74 0 0 chr1 115834762 115834789 -166358875 + (TAA)n Simple_repeat Simple_repeat 1 27 0 402 69 0 0 chr1 115835215 115835273 -166358391 + (TG)n Simple_repeat Simple_repeat 2 59 0 29 0 0 0 chr1 115835342 115835371 -166358293 + AT_rich Low_complexity Low_complexity 1 29 0 4145 110 9 26 chr1 115835876 115836537 -166357127 - L1PB1 LINE L1 -10 6141 5492 190 50 50 25 chr1 115836541 115836581 -166357083 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 6356 40 5 8 chr1 115836583 115837377 -166356287 - L1PA4 LINE L1 -7 6148 5357 10866 67 30 6 chr1 115837377 115839261 -166354403 + L1PA8 LINE L1 3920 5844 -328 1970 107 4 0 chr1 115839261 115839566 -166354098 + AluSp SINE Alu 20 325 0 10866 67 30 6 chr1 115839566 115839904 -166353760 + L1PA8 LINE L1 5844 6172 0 37 55 0 33 chr1 115840942 115841033 -166352631 + AT_rich Low_complexity Low_complexity 1 88 0 2202 100 3 28 chr1 115841038 115841357 -166352307 - AluSp SINE Alu -2 311 1 278 370 10 0 chr1 115841678 115841778 -166351886 + LTR33 LTR ERVL 40 140 -381 783 175 10 88 chr1 115841787 115841981 -166351683 - MER20 DNA MER1_type -5 214 36 871 235 33 16 chr1 115842089 115842336 -166351328 + LTR33 LTR ERVL 259 519 -2 217 357 82 31 chr1 115842764 115842862 -166350802 + L2 LINE L2 3160 3262 -10 590 261 17 6 chr1 115843142 115843318 -166350346 + L1MA4 LINE L1 6121 6298 -2 577 240 61 25 chr1 115844435 115844631 -166349033 - MER93a LTR ERV1 0 402 200 251 287 35 11 chr1 115844645 115844732 -166348932 - MER57B LTR ERV1 -212 222 134 218 85 64 0 chr1 115844732 115844779 -166348885 + (TA)n Simple_repeat Simple_repeat 2 51 0 26 30 0 0 chr1 115844908 115844941 -166348723 + AT_rich Low_complexity Low_complexity 1 33 0 264 333 49 10 chr1 115846037 115846139 -166347525 + MIR SINE MIR 34 139 -123 635 188 7 54 chr1 115846149 115846298 -166347366 - LTR40a LTR ERVL -2 517 376 383 303 49 56 chr1 115846590 115846857 -166346807 - HAL1 LINE L1 -2198 309 45 2156 92 3 0 chr1 115846864 115847159 -166346505 + AluSp SINE Alu 1 296 -17 255 152 0 0 chr1 115847451 115847497 -166346167 + (CA)n Simple_repeat Simple_repeat 1 46 0 2557 170 20 59 chr1 115847497 115848082 -166345582 - L1M2 LINE L1 -521 5791 5226 1571 164 10 30 chr1 115848082 115848381 -166345283 - THE1C LTR MaLR 0 375 83 282 137 20 0 chr1 115848395 115848446 -166345218 + MSTA LTR MaLR 1 52 -376 266 128 0 0 chr1 115848592 115848631 -166345033 - THE1C LTR MaLR -336 39 1 32 26 0 0 chr1 115851852 115851891 -166341773 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 115851964 115851992 -166341672 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr1 115853063 115853122 -166340542 + AT_rich Low_complexity Low_complexity 1 59 0 2787 228 50 46 chr1 115853874 115854772 -166338892 + L1MB7 LINE L1 5278 6179 -5 21 36 0 0 chr1 115857999 115858027 -166335637 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 115858299 115858327 -166335337 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr1 115859345 115859377 -166334287 + (CAT)n Simple_repeat Simple_repeat 1 32 0 279 0 0 0 chr1 115859623 115859654 -166334010 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2388 63 30 0 chr1 115859971 115860272 -166333392 - AluY SINE Alu -1 310 1 325 322 76 17 chr1 115860498 115860616 -166333048 + L2 LINE L2 3112 3236 -36 23 0 0 0 chr1 115860950 115860973 -166332691 + AT_rich Low_complexity Low_complexity 1 23 0 1856 142 0 29 chr1 115861022 115861331 -166332333 + AluJb SINE Alu 3 302 -10 320 210 208 15 chr1 115861774 115861894 -166331770 + L1MD2 LINE L1 5769 5905 -269 2051 139 0 0 chr1 115862578 115862879 -166330785 + AluSq SINE Alu 3 303 -10 739 196 12 12 chr1 115863636 115863804 -166329860 - L1M2 LINE L1 -1071 5075 4908 304 281 178 22 chr1 115863807 115863992 -166329672 - L1M4 LINE L1 -1454 4692 4479 9311 58 5 26 chr1 115864237 115866287 -166327377 - L1PA6 LINE L1 -1 6153 4132 240 346 48 53 chr1 115866445 115866633 -166327031 + LTR33A LTR ERVL 2 188 -335 10464 185 27 20 chr1 115867381 115869822 -166323842 + L1PA13 LINE L1 3107 5561 -604 2108 173 8 18 chr1 115869831 115870229 -166323435 + L1PA13 LINE L1 5752 6145 -18 740 185 0 8 chr1 115871228 115871358 -166322306 + FLAM_A SINE Alu 1 129 -4 1004 58 7 0 chr1 115871362 115871499 -166322165 - L1P LINE L1 -727 5427 5290 229 91 0 0 chr1 115871489 115871522 -166322142 + L1PA6 LINE L1 6111 6143 -11 * 327 65 0 0 chr1 115871524 115871570 -166322094 + (GA)n Simple_repeat Simple_repeat 1 46 0 30 0 0 0 chr1 115871991 115872021 -166321643 + AT_rich Low_complexity Low_complexity 1 30 0 42 48 0 0 chr1 115872839 115872902 -166320762 + AT_rich Low_complexity Low_complexity 1 63 0 241 336 10 29 chr1 115872925 115873029 -166320635 - L2 LINE L2 0 3313 3212 23 0 0 0 chr1 115873910 115873933 -166319731 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 115874192 115874213 -166319451 + AT_rich Low_complexity Low_complexity 1 21 0 252 364 67 59 chr1 115876143 115876517 -166317147 + L2 LINE L2 374 750 -2564 1374 198 14 24 chr1 115876618 115876906 -166316758 + AluJo SINE Alu 6 290 -22 218 380 66 30 chr1 115877039 115877402 -166316262 + L2 LINE L2 783 1158 -2156 2808 177 79 67 chr1 115877413 115878614 -166315050 - L1MCa LINE L1 -3939 2668 1302 261 284 27 0 chr1 115878872 115878946 -166314718 - MER81 DNA DNA -4 110 35 884 338 16 5 chr1 115879046 115879413 -166314251 - L1MCa LINE L1 -6006 601 231 416 258 0 11 chr1 115879577 115879670 -166313994 - MER96 DNA MER1_type? 0 175 84 190 350 40 20 chr1 115880440 115880540 -166313124 - L2 LINE L2 -32 3281 3180 480 363 85 22 chr1 115880767 115881131 -166312533 - L2 LINE L2 -415 2899 2513 3231 230 16 12 chr1 115881555 115882355 -166311309 + L1M2 LINE L1 4399 5201 -945 1581 147 16 147 chr1 115882402 115882831 -166310833 + THE1C LTR MaLR 3 375 0 2557 170 20 59 chr1 115882831 115883416 -166310248 + L1M2 LINE L1 5226 5791 -521 255 152 0 0 chr1 115883416 115883462 -166310202 + (TG)n Simple_repeat Simple_repeat 1 46 0 2156 92 3 0 chr1 115883754 115884049 -166309615 - AluSp SINE Alu -17 296 1 426 302 45 56 chr1 115884056 115884324 -166309340 + HAL1 LINE L1 45 309 -2198 635 188 7 54 chr1 115884616 115884765 -166308899 + LTR40a LTR ERVL 376 517 -2 264 333 49 10 chr1 115884775 115884877 -166308787 - MIR SINE MIR -123 139 34 26 30 0 0 chr1 115885972 115886005 -166307659 + AT_rich Low_complexity Low_complexity 1 33 0 218 85 64 0 chr1 115886133 115886180 -166307484 + (TA)n Simple_repeat Simple_repeat 2 51 0 251 287 35 11 chr1 115886180 115886267 -166307397 + MER57B LTR ERV1 134 222 -212 577 240 61 25 chr1 115886281 115886477 -166307187 + MER93a LTR ERV1 200 402 0 590 261 17 6 chr1 115887594 115887770 -166305894 - L1MA4 LINE L1 -2 6298 6121 217 357 82 31 chr1 115888050 115888148 -166305516 - L2 LINE L2 -10 3262 3160 871 235 33 16 chr1 115888576 115888823 -166304841 - LTR33 LTR ERVL -2 519 259 783 175 10 88 chr1 115888931 115889125 -166304539 + MER20 DNA MER1_type 36 214 -5 278 370 10 0 chr1 115889134 115889234 -166304430 - LTR33 LTR ERVL -381 140 40 2202 100 3 28 chr1 115889555 115889874 -166303790 + AluSp SINE Alu 1 311 -2 37 55 0 33 chr1 115889879 115889970 -166303694 + AT_rich Low_complexity Low_complexity 1 88 0 19537 114 22 5 chr1 115891007 115891345 -166302319 - L1PA8 LINE L1 0 6172 5842 378 0 0 0 chr1 115891345 115891387 -166302277 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1947 110 4 0 chr1 115891387 115891650 -166302014 - AluSp SINE Alu -30 283 20 19537 114 22 5 chr1 115891650 115895174 -166298490 - L1PA8 LINE L1 -329 5843 2231 330 257 66 79 chr1 115895707 115895859 -166297805 - L2 LINE L2 -4 3309 3160 236 340 105 16 chr1 115895916 115896137 -166297527 - L2 LINE L2 -219 3053 2820 903 209 0 0 chr1 115896292 115896445 -166297219 + AluJb SINE Alu 142 294 -18 240 275 50 0 chr1 115896774 115896854 -166296810 + L1MC4 LINE L1 6617 6700 -1342 835 314 61 19 chr1 115896996 115897592 -166296072 - L1ME3A LINE L1 -215 5955 5338 1535 170 7 38 chr1 115897965 115898254 -166295410 - AluJo SINE Alu -32 280 1 2723 6 0 19 chr1 115898867 115899182 -166294482 - AluYa5 SINE Alu -2 309 1 816 310 70 21 chr1 115899673 115900047 -166293617 - MLT1I LTR MaLR -15 394 3 510 127 13 0 chr1 115900709 115900788 -166292876 + MADE1 DNA Mariner 1 80 0 569 67 49 48 chr1 115901451 115901698 -166291966 + (TA)n Simple_repeat Simple_repeat 1 247 0 2245 261 22 43 chr1 115902011 115902857 -166290807 + L1MD2 LINE L1 4016 4844 -1302 812 197 81 100 chr1 115902865 115903047 -166290617 + L1MD2 LINE L1 5084 5268 -898 261 0 0 0 chr1 115903047 115903076 -166290588 + (CA)n Simple_repeat Simple_repeat 1 29 0 812 197 81 100 chr1 115903076 115903210 -166290454 + L1MD2 LINE L1 5268 5403 -763 1254 50 0 6 chr1 115903210 115903371 -166290293 + L1PA4 LINE L1 5995 6154 -1 812 197 81 100 chr1 115903371 115903555 -166290109 + L1MD2 LINE L1 5403 5586 -580 380 294 63 8 chr1 115903572 115903698 -166289966 - FLAM_A SINE Alu 0 133 1 2028 279 85 19 chr1 115903698 115904416 -166289248 + L1MD2 LINE L1 5579 6343 -16 270 349 99 30 chr1 115906355 115906525 -166287139 + MIR SINE MIR 12 204 -58 453 81 0 0 chr1 115906525 115906587 -166287077 + (TA)n Simple_repeat Simple_repeat 1 62 0 270 349 99 30 chr1 115906587 115906648 -166287016 + MIR SINE MIR 204 259 -3 279 171 9 95 chr1 115907062 115907167 -166286497 - L1ME4a LINE L1 -225 5896 5801 494 274 70 19 chr1 115907194 115907351 -166286313 + MIR SINE MIR 96 260 -2 2734 10 3 0 chr1 115907606 115907915 -166285749 + AluYa5 SINE Alu 1 310 -1 21 82 0 0 chr1 115907956 115908005 -166285659 + AT_rich Low_complexity Low_complexity 1 49 0 265 300 22 33 chr1 115908437 115908527 -166285137 + MIR SINE MIR 42 130 -78 28 48 0 0 chr1 115908866 115908908 -166284756 + AT_rich Low_complexity Low_complexity 1 42 0 288 192 39 0 chr1 115909377 115909429 -166284235 - tRNA-Gly-GGA tRNA tRNA 0 75 22 32 0 0 0 chr1 115909699 115909731 -166283933 + AT_rich Low_complexity Low_complexity 1 32 0 324 0 0 0 chr1 115909848 115909884 -166283780 + (CA)n Simple_repeat Simple_repeat 1 36 0 519 176 32 26 chr1 115910584 115911526 -166282138 + (TA)n Simple_repeat Simple_repeat 1 947 0 26 74 0 0 chr1 115911574 115911628 -166282036 + AT_rich Low_complexity Low_complexity 1 54 0 1723 106 4 24 chr1 115913112 115913358 -166280306 + AluSq SINE Alu 20 260 -53 405 0 0 0 chr1 115913360 115913405 -166280259 + (CA)n Simple_repeat Simple_repeat 2 46 0 4499 220 28 25 chr1 115913615 115915536 -166278128 + L1PA12 LINE L1 2289 4222 -3362 1024 211 124 0 chr1 115915610 115915692 -166277972 + AluJb SINE Alu 39 109 -204 186 43 0 0 chr1 115915692 115915715 -166277949 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1024 211 124 0 chr1 115915715 115915880 -166277784 + AluJb SINE Alu 109 313 0 382 217 12 0 chr1 115916005 115916088 -166277576 - MER103 DNA DNA -77 89 6 213 180 40 0 chr1 115916391 115916441 -166277223 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 1839 168 0 0 chr1 115916524 115916822 -166276842 - AluSq SINE Alu -8 305 8 2119 117 0 0 chr1 115918210 115918509 -166275155 - AluSc SINE Alu -8 301 3 271 304 52 17 chr1 115920711 115920826 -166272838 - MIR SINE MIR -84 124 6 21 0 0 0 chr1 115921572 115921593 -166272071 + AT_rich Low_complexity Low_complexity 1 21 0 1697 156 0 61 chr1 115924400 115924908 -166268756 - AluSx SINE Alu 0 312 1 1829 248 74 51 chr1 115925602 115926154 -166267510 + MLT1E LTR MaLR 26 590 -3 232 230 200 30 chr1 115926231 115926331 -166267333 - L2 LINE L2 -8 3305 3189 555 269 18 85 chr1 115926451 115926674 -166266990 + MER63A DNA MER1_type 1 208 -2 237 413 29 0 chr1 115926675 115926847 -166266817 - L2 LINE L2 -226 3046 2870 260 296 14 0 chr1 115926902 115926973 -166266691 - L2 LINE L2 -41 3272 3201 398 302 56 0 chr1 115927150 115927276 -166266388 + MIR SINE MIR 120 252 -10 342 67 0 0 chr1 115927462 115927507 -166266157 + (A)n Simple_repeat Simple_repeat 1 45 0 291 360 37 19 chr1 115927632 115927793 -166265871 + L3 LINE CR1 1045 1208 -369 304 343 29 0 chr1 115928047 115928149 -166265515 + L2 LINE L2 3192 3296 -17 2067 93 0 31 chr1 115928350 115928639 -166265025 - AluSc SINE Alu -7 302 23 25 0 0 0 chr1 115928690 115928715 -166264949 + AT_rich Low_complexity Low_complexity 1 25 0 403 277 33 55 chr1 115929811 115930063 -166263601 + L1MEc LINE L1 556 766 -5304 * 869 288 38 32 chr1 115930057 115930457 -166263207 + L1ME2 LINE L1 5667 6068 -96 368 270 66 22 chr1 115930469 115930625 -166263039 - MER63 DNA MER1_type 0 1060 677 507 375 16 0 chr1 115930941 115931133 -166262531 + MIR SINE MIR 25 219 -43 28 61 0 0 chr1 115931268 115931317 -166262347 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr1 115931355 115931386 -166262278 + AT_rich Low_complexity Low_complexity 1 31 0 964 305 128 17 chr1 115932013 115932482 -166261182 + LTR33 LTR ERVL 1 521 0 2297 85 3 0 chr1 115932685 115932980 -166260684 + AluY SINE Alu 1 296 -15 22 56 0 0 chr1 115933009 115933045 -166260619 + AT_rich Low_complexity Low_complexity 1 36 0 952 319 52 22 chr1 115933169 115933772 -166259892 + L2 LINE L2 2669 3276 -37 777 272 74 42 chr1 115934320 115934629 -166259035 + LTR33A LTR ERVL 203 521 -2 2356 36 0 0 chr1 115934779 115935060 -166258604 + L1PA4 LINE L1 5874 6154 -1 411 138 0 15 chr1 115935245 115935310 -166258354 - MLT1C LTR MaLR 0 467 404 354 264 21 28 chr1 115935431 115935575 -166258089 + C-rich Low_complexity Low_complexity 6 148 0 575 167 0 0 chr1 115935597 115935705 -166257959 - L1P LINE L1 -2319 3827 3720 * 7378 64 41 1 chr1 115935704 115937131 -166256533 + L1P1 LINE L1 4357 5815 -340 832 326 91 26 chr1 115937912 115938342 -166255322 + L2 LINE L2 2856 3313 0 393 22 0 0 chr1 115938365 115938411 -166255253 + (CA)n Simple_repeat Simple_repeat 2 47 0 3284 76 18 0 chr1 115938704 115938743 -166254921 - MLT2A1 LTR ERVL 0 444 407 243 0 0 0 chr1 115938743 115938770 -166254894 + (CA)n Simple_repeat Simple_repeat 2 28 0 3284 76 18 0 chr1 115938770 115939166 -166254498 - MLT2A1 LTR ERVL -37 407 1 3308 110 16 2 chr1 115939173 115939662 -166254002 - HERVL-A1 LTR ERVL -8 5646 5151 2691 34 12 0 chr1 115939781 115940105 -166253559 + L1PA4 LINE L1 5827 6154 -1 2878 97 37 14 chr1 115941757 115942150 -166251514 + MLT2A1 LTR ERVL 1 406 -38 219 36 0 0 chr1 115942150 115942178 -166251486 + (TA)n Simple_repeat Simple_repeat 2 29 0 2878 97 37 14 chr1 115942178 115942218 -166251446 + MLT2A1 LTR ERVL 406 444 0 37498 76 8 4 chr1 115942221 115947059 -166246605 + HERVL-A1 LTR ERVL 2 4862 -792 32 43 0 0 chr1 115947338 115947384 -166246280 + AT_rich Low_complexity Low_complexity 1 46 0 194 250 66 53 chr1 115947995 115948071 -166245593 + L2 LINE L2 3231 3307 -6 37 90 0 0 chr1 115948645 115948745 -166244919 + AT_rich Low_complexity Low_complexity 1 100 0 37 23 0 0 chr1 115949196 115949240 -166244424 + AT_rich Low_complexity Low_complexity 1 44 0 255 331 55 55 chr1 115949287 115949414 -166244250 - MIR SINE MIR -63 145 19 30 0 0 0 chr1 115949513 115949543 -166244121 + AT_rich Low_complexity Low_complexity 1 30 0 2178 61 41 27 chr1 115949908 115950080 -166243584 - AluY SINE Alu -14 297 118 216 0 0 0 chr1 115950080 115950104 -166243560 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2178 61 41 27 chr1 115950104 115950224 -166243440 - AluY SINE Alu -193 118 1 195 42 0 0 chr1 115950340 115950364 -166243300 + (TG)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr1 115951525 115951554 -166242110 + AT_rich Low_complexity Low_complexity 1 29 0 2627 203 105 3 chr1 115951881 115952507 -166241157 - L1MB7 LINE L1 -31 6153 5464 690 261 61 37 chr1 115952766 115953011 -166240653 + MIR SINE MIR 12 262 0 3370 177 33 9 chr1 115953662 115954361 -166239303 + L1MB3 LINE L1 5461 6176 -7 291 114 0 0 chr1 115954679 115954723 -166238941 + (TA)n Simple_repeat Simple_repeat 1 44 0 1554 189 33 7 chr1 115956848 115957150 -166236514 - AluJb SINE Alu -1 311 2 696 204 102 78 chr1 115957342 115957407 -166236257 - MLT1B LTR MaLR -139 251 189 180 0 0 0 chr1 115957407 115957427 -166236237 + (GA)n Simple_repeat Simple_repeat 2 21 0 696 204 102 78 chr1 115957427 115957606 -166236058 - MLT1B LTR MaLR -201 189 1 224 124 56 22 chr1 115958083 115958172 -166235492 + (TA)n Simple_repeat Simple_repeat 2 93 0 23 33 0 0 chr1 115958214 115958244 -166235420 + AT_rich Low_complexity Low_complexity 1 30 0 375 311 41 0 chr1 115958760 115958882 -166234782 - MIR SINE MIR -65 197 71 26 0 0 0 chr1 115959170 115959196 -166234468 + AT_rich Low_complexity Low_complexity 1 26 0 2900 3 0 0 chr1 115959196 115959507 -166234157 + AluYa5 SINE Alu 1 311 0 29 84 0 0 chr1 115959632 115959703 -166233961 + AT_rich Low_complexity Low_complexity 1 71 0 1370 103 149 89 chr1 115959814 115960096 -166233568 - AluSg SINE Alu -11 299 1 22 35 0 0 chr1 115960679 115960708 -166232956 + AT_rich Low_complexity Low_complexity 1 29 0 6678 76 16 0 chr1 115960967 115962417 -166231247 - L1PA7 LINE L1 -4 6150 4687 1110 100 0 0 chr1 115962681 115962821 -166230843 + AluSq/x SINE Alu 1 140 -173 21 0 0 0 chr1 115963334 115963355 -166230309 + AT_rich Low_complexity Low_complexity 1 21 0 2573 11 0 11 chr1 115963375 115963661 -166230003 - AluYa5 SINE Alu -7 304 22 282 304 80 9 chr1 115964128 115964240 -166229424 + L2 LINE L2 3141 3260 -12 195 162 0 0 chr1 115964382 115964419 -166229245 + (TA)n Simple_repeat Simple_repeat 1 37 0 28 0 0 0 chr1 115964447 115964475 -166229189 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 115964738 115964761 -166228903 + AT_rich Low_complexity Low_complexity 1 23 0 207 341 110 46 chr1 115966447 115966775 -166226889 + L2 LINE L2 1455 1803 -1511 21 57 0 0 chr1 115967270 115967305 -166226359 + AT_rich Low_complexity Low_complexity 1 35 0 502 194 52 93 chr1 115967329 115967577 -166226087 - L1MC5 LINE L1 -105 7856 7619 23 54 0 0 chr1 115967728 115967765 -166225899 + AT_rich Low_complexity Low_complexity 1 37 0 7938 48 3 0 chr1 115967848 115969596 -166224068 - L1PA5 LINE L1 -11 6143 4390 494 317 141 16 chr1 115969621 115969996 -166223668 - MLT1L LTR MaLR -7 608 187 529 354 111 53 chr1 115970035 115970384 -166223280 + L2 LINE L2 2278 2605 -709 522 0 0 0 chr1 115970384 115970442 -166223222 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 2006 124 0 7 chr1 115970445 115970728 -166222936 - AluSx SINE Alu -31 281 1 529 354 111 53 chr1 115970728 115971032 -166222632 + L2 LINE L2 2606 2973 -341 2312 137 56 8 chr1 115971217 115971367 -166222297 + MSTA LTR MaLR 53 194 -234 372 22 0 0 chr1 115971367 115971412 -166222252 + (TC)n Simple_repeat Simple_repeat 1 45 0 2312 137 56 8 chr1 115971412 115971620 -166222044 + MSTA LTR MaLR 194 428 0 196 352 0 11 chr1 115971762 115971850 -166221814 - MIR SINE MIR -28 234 148 1797 155 90 12 chr1 115973153 115973488 -166220176 - MLT1A1 LTR MaLR -4 361 1 21 57 0 0 chr1 115973743 115973778 -166219886 + AT_rich Low_complexity Low_complexity 1 35 0 329 306 12 0 chr1 115975260 115975345 -166218319 - L2 LINE L2 -1 3312 3227 217 245 20 0 chr1 115975964 115976013 -166217651 + MIR SINE MIR 99 148 -60 368 312 80 0 chr1 115976561 115976686 -166216978 - L2 LINE L2 0 3272 3138 685 65 19 0 chr1 115977921 115978029 -166215635 + (TCTA)n Simple_repeat Simple_repeat 1 110 0 393 303 123 24 chr1 115978030 115978241 -166215423 - LTR16C LTR ERVL -99 392 161 224 294 103 48 chr1 115979938 115980084 -166213580 + L2 LINE L2 2554 2707 -607 271 391 85 19 chr1 115980437 115980695 -166212969 - L2 LINE L2 -665 2649 2375 364 299 179 30 chr1 115980775 115981009 -166212655 + MLT1K LTR MaLR 34 302 -286 275 302 123 6 chr1 115981039 115981218 -166212446 + MLT1K LTR MaLR 377 576 -12 1417 178 22 67 chr1 115981747 115982061 -166211603 - MER7A DNA MER2_type -48 298 1 254 314 14 0 chr1 115984988 115985058 -166208606 - MIR SINE MIR -21 241 171 217 224 0 0 chr1 115985267 115985316 -166208348 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 233 197 16 0 chr1 115987646 115987707 -166205957 + GA-rich Low_complexity Low_complexity 3 64 0 302 284 74 102 chr1 115987883 115988059 -166205605 + LTR67 LTR ERVL 20 190 -367 192 97 0 0 chr1 115988079 115988110 -166205554 + (TC)n Simple_repeat Simple_repeat 2 32 0 268 264 77 0 chr1 115988162 115988253 -166205411 - L1MEd LINE L1 -5404 715 618 754 239 140 28 chr1 115988699 115989099 -166204565 - L1ME LINE L1 -464 5698 5238 1177 305 109 18 chr1 115989264 115990534 -166203130 - L1ME LINE L1 -1156 4990 3606 339 85 0 0 chr1 115990534 115990581 -166203083 + (TTC)n Simple_repeat Simple_repeat 1 47 0 300 317 67 38 chr1 115990581 115990600 -166203064 - L1ME LINE L1 -2528 3618 3601 225 0 0 0 chr1 115990600 115990625 -166203039 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 300 317 67 38 chr1 115990625 115990946 -166202718 - L1ME LINE L1 -2545 3601 3268 2285 157 28 28 chr1 115990978 115991410 -166202254 + MSTB1 LTR MaLR 1 432 0 5989 249 59 10 chr1 115991410 115992979 -166200685 + MSTB1-int LTR MaLR 5 1651 0 2128 166 35 44 chr1 115992979 115993413 -166200251 + MSTB1 LTR MaLR 1 430 -2 578 319 100 20 chr1 115993433 115993922 -166199742 - L1ME LINE L1 -3350 2796 2269 233 276 61 0 chr1 115994456 115994554 -166199110 + L1MC4a LINE L1 6267 6370 -1438 369 166 23 29 chr1 115994970 115995145 -166198519 + (TA)n Simple_repeat Simple_repeat 1 174 0 201 334 90 69 chr1 115995147 115995524 -166198140 - L2 LINE L2 -1697 1617 1233 435 264 196 7 chr1 115995853 115996001 -166197663 - MER5A DNA MER1_type 0 189 14 249 192 0 0 chr1 115997848 115997900 -166195764 - L1MC4 LINE L1 -1339 6703 6652 * 276 164 0 135 chr1 115997886 115997990 -166195674 + L1MC4 LINE L1 6614 6703 -1339 * 294 250 0 22 chr1 115997900 115997992 -166195672 - L1MC4 LINE L1 -1339 6703 6614 41 66 0 0 chr1 115998249 115998325 -166195339 + AT_rich Low_complexity Low_complexity 1 76 0 212 276 35 0 chr1 115998901 115998988 -166194676 + A-rich Low_complexity Low_complexity 1 90 0 328 279 36 27 chr1 115999641 115999752 -166193912 - L2 LINE L2 -9 3304 3193 1417 190 44 39 chr1 115999803 115999951 -166193713 - L1MB8 LINE L1 0 6178 6032 2136 102 0 10 chr1 115999951 116000270 -166193394 + AluSx SINE Alu 1 312 0 1417 190 44 39 chr1 116000270 116000484 -166193180 - L1MB8 LINE L1 -146 6032 5814 21 0 0 0 chr1 116000712 116000733 -166192931 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 116001240 116001263 -166192401 + AT_rich Low_complexity Low_complexity 1 23 0 40 21 0 0 chr1 116001723 116001770 -166191894 + AT_rich Low_complexity Low_complexity 1 47 0 2047 150 16 22 chr1 116002678 116003044 -166190620 + THE1B LTR MaLR 1 364 0 9730 95 98 6 chr1 116003044 116004489 -166189175 + THE1A-int LTR MaLR 1 1579 -1 2516 89 23 6 chr1 116004490 116004839 -166188825 + THE1A LTR MaLR 1 355 0 258 245 51 61 chr1 116004866 116004915 -166188749 - MER94 DNA DNA -35 99 51 2010 151 99 30 chr1 116004915 116005319 -166188345 - MSTB1 LTR MaLR 0 432 1 258 245 51 61 chr1 116005319 116005367 -166188297 - MER94 DNA DNA -83 51 3 984 159 8 95 chr1 116005601 116005853 -166187811 - L1MA9 LINE L1 -6 6306 6077 225 277 106 71 chr1 116006060 116006201 -166187463 + MLT1K LTR MaLR 202 347 -241 852 206 0 92 chr1 116006323 116006561 -166187103 + MER20 DNA MER1_type 2 217 -2 703 278 142 42 chr1 116006688 116006787 -166186877 + L2 LINE L2 2702 2790 -523 1026 250 103 10 chr1 116006787 116007099 -166186565 - MER58B DNA MER1_type 0 341 1 703 278 142 42 chr1 116007099 116007551 -166186113 + L2 LINE L2 2790 3313 0 640 311 45 53 chr1 116007868 116008248 -166185416 + LTR16A1 LTR ERVL 66 442 -15 4602 203 84 19 chr1 116008538 116009688 -166183976 + L1MC3 LINE L1 6554 7778 -7 340 320 8 31 chr1 116010266 116010394 -166183270 + L2 LINE L2 3186 3310 -3 235 254 0 16 chr1 116010429 116010492 -166183172 + L2 LINE L2 2760 2821 -493 27 49 0 0 chr1 116011462 116011503 -166182161 + AT_rich Low_complexity Low_complexity 1 41 0 271 277 179 27 chr1 116012187 116012299 -166181365 - L2 LINE L2 -3 3269 3141 195 356 52 26 chr1 116012469 116012584 -166181080 - MIR SINE MIR -125 137 20 803 270 70 4 chr1 116012726 116012967 -166180697 + MIR SINE MIR 6 262 0 22 56 0 0 chr1 116013190 116013226 -166180438 + AT_rich Low_complexity Low_complexity 1 36 0 201 327 73 47 chr1 116014427 116014577 -166179087 + MER5A DNA MER1_type 13 166 -23 * 374 280 11 0 chr1 116014509 116014602 -166179062 - MER5A DNA MER1_type -86 103 10 23 0 0 0 chr1 116014966 116014989 -166178675 + AT_rich Low_complexity Low_complexity 1 23 0 515 355 6 33 chr1 116015315 116015498 -166178166 - MIR3 SINE MIR -21 187 10 26 0 0 0 chr1 116017167 116017193 -166176471 + AT_rich Low_complexity Low_complexity 1 26 0 671 173 115 13 chr1 116017325 116017481 -166176183 - MLT1C LTR MaLR -292 175 4 2069 140 90 18 chr1 116017598 116017997 -166175667 + MSTA LTR MaLR 1 428 0 23 33 0 0 chr1 116018212 116018242 -166175422 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr1 116018480 116018528 -166175136 + AT_rich Low_complexity Low_complexity 1 48 0 995 188 140 41 chr1 116018903 116019174 -166174490 + MLT1C LTR MaLR 170 467 0 2090 209 13 39 chr1 116019174 116019720 -166173944 + L1ME1 LINE L1 5630 6161 -5 21 36 0 0 chr1 116020818 116020846 -166172818 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr1 116022001 116022028 -166171636 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 181 308 0 0 chr1 116023176 116023228 -166170436 + L2 LINE L2 3219 3270 -2 506 286 39 22 chr1 116023911 116024089 -166169575 + MER5A DNA MER1_type 1 181 -8 789 350 115 44 chr1 116025083 116026013 -166167651 - L2 LINE L2 -447 2867 1872 22 0 0 0 chr1 116027311 116027333 -166166331 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr1 116027423 116027466 -166166198 + AT_rich Low_complexity Low_complexity 1 43 0 459 254 8 8 chr1 116027686 116027812 -166165852 + L2 LINE L2 3188 3313 0 273 267 23 76 chr1 116027963 116028094 -166165570 - MIR SINE MIR -19 243 120 5106 43 2 0 chr1 116028170 116028801 -166164863 - L1P LINE L1 -1795 4351 3720 348 306 113 0 chr1 116229587 116229711 -165963953 - MIR SINE MIR -122 140 3 924 239 60 3 chr1 116229727 116230037 -165963627 + MER33 DNA MER1_type 1 324 0 523 182 0 40 chr1 116230874 116230895 -165962769 + Tigger7 DNA MER2_type 2391 2411 -80 1863 139 54 18 chr1 116230895 116231226 -165962438 - MER2 DNA MER2_type -1 343 1 523 182 0 40 chr1 116231226 116231303 -165962361 + Tigger7 DNA MER2_type 2411 2485 -6 432 268 137 11 chr1 116232117 116232300 -165961364 + MIR SINE MIR 57 262 0 295 331 98 25 chr1 116234695 116234858 -165958806 + MIR3 SINE MIR 32 206 -2 2057 129 3 7 chr1 116234874 116235184 -165958480 + AluSq SINE Alu 1 309 -4 21 0 0 0 chr1 116235312 116235333 -165958331 + AT_rich Low_complexity Low_complexity 1 21 0 418 291 114 43 chr1 116235350 116235560 -165958104 - MIR SINE MIR -26 236 12 24 32 0 0 chr1 116235601 116235632 -165958032 + AT_rich Low_complexity Low_complexity 1 31 0 243 232 88 53 chr1 116235975 116236260 -165957404 + L1M4 LINE L1 2260 2554 -3592 450 304 208 15 chr1 116236442 116236837 -165956827 - L1MC/D LINE L1 -2074 5734 5264 1247 207 127 4 chr1 116236983 116237258 -165956406 - MER7A DNA MER2_type 0 346 40 1151 189 109 0 chr1 116237328 116237576 -165956088 + MER2 DNA MER2_type 4 278 -67 886 174 0 0 chr1 116237663 116237807 -165955857 - FRAM SINE Alu -13 163 20 341 210 0 25 chr1 116238075 116238156 -165955508 - MLT1I LTR MaLR 0 409 331 292 235 59 0 chr1 116238252 116238337 -165955327 - MLT1I LTR MaLR -250 159 70 291 198 125 17 chr1 116239526 116239679 -165953985 + MER34C LTR ERV1 11 165 -377 2249 109 0 6 chr1 116240422 116240733 -165952931 + AluY SINE Alu 3 311 0 353 271 68 15 chr1 116241223 116241356 -165952308 - L1M3c LINE L1 -4756 1385 1246 1562 274 12 25 chr1 116241477 116242035 -165951629 - LTR25-int LTR ERV1 -5819 1177 627 254 193 18 18 chr1 116242082 116242139 -165951525 - MER4A LTR ERV1 -351 313 257 * 330 198 88 11 chr1 116242135 116242226 -165951438 - MER4A LTR ERV1 -566 98 1 1660 144 10 10 chr1 116242240 116242539 -165951125 + L1M1 LINE L1 5254 5552 -753 1278 300 141 51 chr1 116242648 116243667 -165949997 - L2 LINE L2 -1520 1794 684 5823 139 22 2 chr1 116244078 116245057 -165948607 - L1MA3 LINE L1 -53 6252 5254 344 176 88 11 chr1 116245071 116245162 -165948502 + MER4A LTR ERV1 1 98 -566 292 158 18 18 chr1 116245158 116245215 -165948449 + MER4A LTR ERV1 257 313 -351 * 881 230 15 23 chr1 116245286 116245547 -165948117 + Harlequin LTR ERV1 649 907 -6089 1242 223 3 35 chr1 116246030 116246312 -165947352 - AluJo SINE Alu -39 273 1 468 282 171 19 chr1 116246348 116246564 -165947100 + MIR SINE MIR 6 254 -8 28 29 0 0 chr1 116247638 116247673 -165945991 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 116247715 116247751 -165945913 + AT_rich Low_complexity Low_complexity 1 36 0 1590 280 14 7 chr1 116248688 116249468 -165944196 + Harlequin LTR ERV1 890 1712 -5284 3140 214 32 3 chr1 116249520 116250147 -165943517 + Harlequin LTR ERV1 2147 2791 -6128 5679 202 67 58 chr1 116250150 116251927 -165941737 + Harlequin LTR ERV1 609 2332 -2885 21 36 0 0 chr1 116252786 116252814 -165940850 + AT_rich Low_complexity Low_complexity 1 28 0 1358 204 4 32 chr1 116254165 116254444 -165939220 - AluJo SINE Alu -41 271 1 468 282 171 19 chr1 116254479 116254695 -165938969 + MIR SINE MIR 6 254 -8 400 338 153 39 chr1 116254763 116255174 -165938490 + L3 LINE CR1 1057 1514 -63 191 287 64 32 chr1 116255475 116255569 -165938095 - MIR SINE MIR -11 251 155 25 0 0 0 chr1 116255615 116255640 -165938024 + AT_rich Low_complexity Low_complexity 1 25 0 264 130 0 0 chr1 116256348 116256394 -165937270 + (CA)n Simple_repeat Simple_repeat 2 47 0 708 191 8 0 chr1 116257272 116257398 -165936266 - FLAM_C SINE Alu -6 127 1 210 71 0 0 chr1 116260439 116260467 -165933197 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3021 100 91 0 chr1 116261033 116261482 -165932182 + LTR2B LTR ERV1 1 490 0 2043 114 26 49 chr1 116261482 116261832 -165931832 + Harlequin LTR ERV1 1 342 -6554 * 8740 263 22 5 chr1 116261829 116263889 -165929775 + Harlequin LTR ERV1 766 2859 -4954 3533 200 8 3 chr1 116263882 116264506 -165929158 + Harlequin LTR ERV1 2961 3587 -4226 * 15523 250 12 11 chr1 116264516 116268034 -165925630 + Harlequin LTR ERV1 3841 7359 -454 1979 174 21 21 chr1 116268025 116268405 -165925259 + Harlequin LTR ERV1 6517 6896 0 * 3210 115 45 0 chr1 116268405 116268874 -165924790 + LTR2B LTR ERV1 1 490 0 244 284 145 12 chr1 116269110 116269367 -165924297 - L1ME LINE L1 -390 5731 5406 2103 117 0 10 chr1 116269367 116269674 -165923990 + AluY SINE Alu 1 304 -7 244 284 145 12 chr1 116269674 116269774 -165923890 - L1ME LINE L1 -715 5406 5321 997 241 129 4 chr1 116269981 116270259 -165923405 - MER7A DNA MER2_type 0 346 36 827 187 137 0 chr1 116270325 116270507 -165923157 + MER2 DNA MER2_type 4 210 -135 22 56 0 0 chr1 116270738 116270774 -165922890 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 116271033 116271068 -165922596 + AT_rich Low_complexity Low_complexity 1 35 0 1596 167 4 11 chr1 116271098 116271368 -165922296 - AluSx SINE Alu -44 268 1 327 25 0 0 chr1 116271539 116271579 -165922085 + (TG)n Simple_repeat Simple_repeat 1 40 0 1991 288 157 44 chr1 116271925 116273275 -165920389 + L2 LINE L2 677 2178 -1136 24 0 0 0 chr1 116273742 116273766 -165919898 + AT_rich Low_complexity Low_complexity 1 24 0 220 380 29 29 chr1 116274464 116274596 -165919068 - MER5B DNA MER1_type -10 179 37 436 297 47 16 chr1 116274596 116274724 -165918940 + MER5B DNA MER1_type 3 134 -44 835 178 0 34 chr1 116274725 116274871 -165918793 - AluJb SINE Alu -24 288 148 3237 162 33 26 chr1 116274874 116275535 -165918129 + L1MA4A LINE L1 5634 6299 -4 230 269 39 19 chr1 116275950 116276054 -165917610 - HAL1 LINE L1 -1004 1503 1398 338 178 0 0 chr1 116276156 116276229 -165917435 - L1MA9 LINE L1 -2 6310 6238 1257 261 50 14 chr1 116276418 116276839 -165916825 - L1ME3 LINE L1 0 6162 5727 1024 156 6 6 chr1 116277026 116277206 -165916458 - L1PA16 LINE L1 0 6166 5987 672 217 65 0 chr1 116277211 116277395 -165916269 - L1MA9 LINE L1 -90 6222 6027 1331 139 54 131 chr1 116277407 116277526 -165916138 - L1MA9 LINE L1 -401 5911 5784 437 0 19 0 chr1 116277526 116277579 -165916085 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 1331 139 54 131 chr1 116277579 116277741 -165915923 - L1MA9 LINE L1 -528 5784 5663 1552 142 0 9 chr1 116277741 116277974 -165915690 - AluSq SINE Alu -78 235 5 1331 139 54 131 chr1 116277974 116278064 -165915600 - L1MA9 LINE L1 -649 5663 5568 286 126 126 92 chr1 116278654 116278741 -165914923 - L1MA9 LINE L1 -730 5570 5481 724 171 0 0 chr1 116279067 116279184 -165914480 + FLAM_C SINE Alu 3 143 0 196 42 0 0 chr1 116279184 116279208 -165914456 + (CAAAA)n Simple_repeat Simple_repeat 2 175 0 34 24 0 0 chr1 116279831 116279872 -165913792 + AT_rich Low_complexity Low_complexity 1 41 0 287 111 0 19 chr1 116280081 116280135 -165913529 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 57 0 0 chr1 116280681 116280716 -165912948 + AT_rich Low_complexity Low_complexity 1 35 0 293 307 30 0 chr1 116280925 116281026 -165912638 + MIR SINE MIR 154 257 -5 383 353 152 23 chr1 116281319 116281628 -165912036 - L3 LINE CR1 -63 1514 1166 393 288 181 6 chr1 116281792 116281969 -165911695 - MIR SINE MIR -8 254 47 1468 194 4 11 chr1 116282042 116282315 -165911349 + AluJo SINE Alu 1 271 -41 1726 115 8 15 chr1 116283426 116283687 -165909977 - AluSx SINE Alu -53 259 1 309 109 0 0 chr1 116283859 116283905 -165909759 + (TG)n Simple_repeat Simple_repeat 1 46 0 1710 265 141 79 chr1 116284260 116285366 -165908298 + L2 LINE L2 671 1845 -1469 39 22 0 0 chr1 116285723 116285769 -165907895 + AT_rich Low_complexity Low_complexity 1 46 0 301 344 44 31 chr1 116286423 116286562 -165907102 - MER5A DNA MER1_type 0 189 49 495 255 31 115 chr1 116286562 116286691 -165906973 + MER5B DNA MER1_type 3 112 -66 1835 163 0 14 chr1 116286691 116286980 -165906684 - AluJb SINE Alu -23 289 5 495 255 31 115 chr1 116286980 116287042 -165906622 + MER5B DNA MER1_type 112 178 0 2016 114 0 20 chr1 116288440 116288739 -165904925 - AluSc SINE Alu -16 293 1 281 345 0 0 chr1 116288844 116288928 -165904736 + MER5A DNA MER1_type 1 84 -105 385 319 0 0 chr1 116288931 116289044 -165904620 - MER81 DNA DNA -1 113 1 361 252 43 61 chr1 116289044 116289159 -165904505 + MER5A DNA MER1_type 77 189 0 1422 145 33 33 chr1 116290552 116290855 -165902809 - AluY SINE Alu -7 304 2 306 185 22 11 chr1 116291054 116291146 -165902518 + (TA)n Simple_repeat Simple_repeat 1 93 0 2271 134 8 27 chr1 116291146 116291518 -165902146 - THE1C LTR MaLR -7 368 4 224 194 0 0 chr1 116291518 116291554 -165902110 + (CA)n Simple_repeat Simple_repeat 1 36 0 278 230 40 0 chr1 116291559 116291633 -165902031 + L1MC4 LINE L1 6617 6693 -1349 339 44 0 0 chr1 116291674 116291719 -165901945 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr1 116294632 116294654 -165899010 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr1 116296388 116296411 -165897253 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 36 23 0 0 chr1 116297033 116297076 -165896588 + AT_rich Low_complexity Low_complexity 1 43 0 272 229 12 0 chr1 116297286 116297369 -165896295 + (TATATG)n Simple_repeat Simple_repeat 2 85 0 302 297 30 0 chr1 116298126 116298227 -165895437 + MIR SINE MIR 154 257 -5 334 370 159 19 chr1 116298518 116298826 -165894838 - L3 LINE CR1 -61 1516 1166 441 296 168 10 chr1 116298990 116299186 -165894478 - MIR SINE MIR -8 254 28 1455 198 4 11 chr1 116299239 116299512 -165894152 + AluJo SINE Alu 1 271 -41 186 71 0 0 chr1 116300867 116300895 -165892769 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr1 116301102 116301127 -165892537 + AT_rich Low_complexity Low_complexity 1 25 0 862 46 0 0 chr1 116301134 116301243 -165892421 + L1PA3 LINE L1 5989 6097 -58 25 0 0 0 chr1 116301776 116301801 -165891863 + AT_rich Low_complexity Low_complexity 1 25 0 2065 224 60 7 chr1 116302645 116303097 -165890567 - MER70B LTR ERVL -102 476 1 934 347 113 41 chr1 116303114 116304498 -165889166 + L2 LINE L2 1489 2972 -342 288 346 57 52 chr1 116305403 116305614 -165888050 + L2 LINE L2 2831 3042 -230 190 348 11 34 chr1 116305698 116305787 -165887877 + L2 LINE L2 3182 3268 -4 280 171 158 13 chr1 116307267 116307343 -165886321 + MIR SINE MIR 106 192 -70 1943 119 19 32 chr1 116307421 116307731 -165885933 + AluSx SINE Alu 1 306 -6 302 208 121 17 chr1 116309152 116309305 -165884359 + MER34 LTR ERV1 11 165 -377 7732 134 15 2 chr1 116310284 116311480 -165882184 - THE1B-int LTR MaLR -369 1211 1 1754 162 78 29 chr1 116311481 116311827 -165881837 - THE1B LTR MaLR -1 363 1 1192 154 0 59 chr1 116311829 116312049 -165881615 - MER61E LTR ERV1 -362 207 1 13165 176 47 39 chr1 116312055 116312617 -165881047 - MER61E-int LTR ERV1 -5 6991 6435 1754 153 68 40 chr1 116312617 116312969 -165880695 + THE1B LTR MaLR 1 362 -2 13165 176 47 39 chr1 116312969 116316219 -165877445 - MER61E-int LTR ERV1 -561 6435 604 3140 218 32 3 chr1 116316215 116316845 -165876819 - HUERS-P3 LTR ERV1 -6127 2792 2145 * 1593 286 13 6 chr1 116316895 116317675 -165875989 - HUERS-P3 LTR ERV1 -5284 1712 890 22 56 0 0 chr1 116318756 116318792 -165874872 + AT_rich Low_complexity Low_complexity 1 36 0 3262 91 58 0 chr1 116320326 116320789 -165872875 + LTR2B LTR ERV1 1 490 0 278 302 153 26 chr1 116321014 116321290 -165872374 - L1MC/D LINE L1 -2058 5750 5400 1986 116 3 10 chr1 116321290 116321592 -165872072 + AluY SINE Alu 1 300 -11 278 302 153 26 chr1 116321592 116321739 -165871925 - L1MC/D LINE L1 -2408 5400 5273 1035 189 70 4 chr1 116321894 116322172 -165871492 - Tigger3(Golem) DNA MER2_type 0 3029 36 1160 176 111 0 chr1 116322238 116322482 -165871182 + MER2 DNA MER2_type 4 274 -71 669 226 0 8 chr1 116322607 116322740 -165870924 - FRAM SINE Alu -44 132 1 330 222 0 25 chr1 116322980 116323061 -165870603 - MLT1I LTR MaLR 0 409 331 233 263 40 0 chr1 116323157 116323233 -165870431 - MLT1I LTR MaLR -250 159 81 31 68 0 0 chr1 116323683 116323742 -165869922 + AT_rich Low_complexity Low_complexity 1 59 0 1659 159 7 14 chr1 116323742 116324019 -165869645 - AluSx SINE Alu -37 275 1 423 0 0 0 chr1 116324188 116324235 -165869429 + (TG)n Simple_repeat Simple_repeat 2 48 0 1846 278 169 56 chr1 116324584 116325924 -165867740 + L2 LINE L2 676 2166 -1148 22 56 0 0 chr1 116326316 116326352 -165867312 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr1 116326394 116326429 -165867235 + AT_rich Low_complexity Low_complexity 1 35 0 305 336 16 24 chr1 116327141 116327258 -165866406 - MER5B DNA MER1_type -26 152 37 435 289 47 16 chr1 116327258 116327386 -165866278 + MER5B DNA MER1_type 3 134 -44 750 206 0 27 chr1 116327387 116327533 -165866131 - AluJb SINE Alu -23 289 148 3263 177 34 11 chr1 116327536 116328187 -165865477 + L1MA4A LINE L1 5634 6299 -4 296 80 68 11 chr1 116328690 116328778 -165864886 + (TA)n Simple_repeat Simple_repeat 1 93 0 372 164 0 0 chr1 116328879 116328952 -165864712 - L1MA9 LINE L1 -2 7729 7657 1186 264 38 9 chr1 116329142 116329566 -165864098 - L1ME3 LINE L1 0 6162 5727 1002 161 6 6 chr1 116329754 116329934 -165863730 - L1PA16 LINE L1 0 6166 5987 610 196 75 17 chr1 116329935 116330108 -165863556 - L1MA9 LINE L1 -86 7645 7463 2415 215 60 43 chr1 116330135 116330254 -165863410 - L1MA9 LINE L1 -401 7330 7214 287 49 24 0 chr1 116330254 116330295 -165863369 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 2415 215 60 43 chr1 116330295 116330458 -165863206 - L1MA9 LINE L1 -517 7214 7055 1767 161 3 7 chr1 116330458 116330744 -165862920 - AluSx SINE Alu -23 289 5 2415 215 60 43 chr1 116330744 116331193 -165862471 - L1MA9 LINE L1 -676 7055 6615 288 0 0 0 chr1 116331193 116331225 -165862439 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2415 215 60 43 chr1 116331225 116331879 -165861785 - L1MA9 LINE L1 -1116 6615 5920 2574 241 31 46 chr1 116331880 116333168 -165860496 - L1MA9 LINE L1 -2970 4595 3325 351 306 20 4 chr1 116333183 116333428 -165860236 - L1MA9 LINE L1 -4292 3273 3025 273 203 0 0 chr1 116333454 116333518 -165860146 - L1M3c LINE L1 -4958 2528 2465 475 232 49 27 chr1 116333534 116333758 -165859906 + L1M3c LINE L1 2513 2741 -4755 2247 105 0 13 chr1 116334246 116334559 -165859105 - AluY SINE Alu 0 311 3 22 70 0 0 chr1 116335130 116335173 -165858491 + AT_rich Low_complexity Low_complexity 1 43 0 1227 24 12 0 chr1 116335365 116335532 -165858132 - L1P LINE L1 -727 5428 5260 5569 28 1 1 chr1 116335532 116336181 -165857483 + L1PA3 LINE L1 5498 6152 -3 854 206 58 0 chr1 116337088 116337277 -165856387 - MLT1A1 LTR MaLR 0 365 166 257 228 51 13 chr1 116337313 116337392 -165856272 - MLT1A1 LTR MaLR -283 82 1 201 74 0 0 chr1 116337499 116337526 -165856138 + (TA)n Simple_repeat Simple_repeat 1 27 0 183 42 0 0 chr1 116337897 116337921 -165855743 + (TTG)n Simple_repeat Simple_repeat 1 24 0 653 154 0 3 chr1 116338727 116338948 -165854716 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr1 116339342 116339365 -165854299 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr1 116339391 116339438 -165854226 + AT_rich Low_complexity Low_complexity 1 47 0 6083 125 21 2 chr1 116340107 116341139 -165852525 - L1MA3 LINE L1 0 6305 5254 372 167 89 0 chr1 116341153 116341243 -165852421 + MER4A LTR ERV1 1 98 -566 274 158 18 18 chr1 116341239 116341296 -165852368 + MER4A LTR ERV1 257 313 -351 * 2320 261 11 13 chr1 116341367 116342081 -165851583 + MER61E-int LTR ERV1 649 1361 -5635 845 268 24 10 chr1 116342085 116342390 -165851274 + MER61E-int LTR ERV1 1170 1712 -5284 2934 217 32 3 chr1 116342442 116343070 -165850594 + MER61E-int LTR ERV1 2147 2792 -6127 * 12020 187 52 42 chr1 116343068 116346315 -165847349 + MER61E-int LTR ERV1 604 6436 -560 1762 153 68 40 chr1 116346315 116346667 -165846997 - THE1B LTR MaLR -2 362 1 12020 187 52 42 chr1 116346667 116347229 -165846435 + MER61E-int LTR ERV1 6436 6991 -5 1097 159 0 59 chr1 116347235 116347455 -165846209 + MER61E LTR ERV1 1 207 -362 1777 162 78 29 chr1 116347457 116347803 -165845861 + THE1B LTR MaLR 1 363 -1 7342 135 15 2 chr1 116347804 116349000 -165844664 + THE1B-int LTR MaLR 1 1211 -369 275 211 126 4 chr1 116349979 116350125 -165843539 - MER34C LTR ERV1 -377 165 11 1998 119 19 32 chr1 116351553 116351863 -165841801 - AluSx SINE Alu -6 306 1 276 171 158 13 chr1 116351941 116352017 -165841647 - MIR SINE MIR -70 192 106 280 346 57 52 chr1 116353670 116353881 -165839783 - L2 LINE L2 -230 3042 2831 180 374 20 0 chr1 116354650 116354749 -165838915 - L2 LINE L2 -821 2493 2393 260 360 121 46 chr1 116354786 116355416 -165838248 - L2 LINE L2 -342 2972 2296 2084 145 0 7 chr1 116355594 116355891 -165837773 + AluSx SINE Alu 1 295 -17 318 50 0 0 chr1 116356461 116356501 -165837163 + (A)n Simple_repeat Simple_repeat 1 40 0 624 212 39 108 chr1 116356989 116357220 -165836444 - MER58C DNA MER1_type 0 215 1 222 217 22 0 chr1 116357620 116357666 -165835998 + CT-rich Low_complexity Low_complexity 2 48 0 3228 149 27 27 chr1 116358072 116358728 -165834936 - L1MA4A LINE L1 -325 5978 5323 342 262 156 38 chr1 116358728 116358965 -165834699 + HAL1 LINE L1 1564 1828 -679 8337 105 5 2 chr1 116359207 116360401 -165833263 + THE1-int LTR MaLR 1 1197 -383 2290 104 7 0 chr1 116360535 116360842 -165832822 + AluSx SINE Alu 3 311 -1 282 177 32 0 chr1 116360912 116360974 -165832690 + MIR SINE MIR 79 142 -120 2008 148 0 16 chr1 116361277 116361587 -165832077 + AluSx SINE Alu 1 305 -7 255 281 83 0 chr1 116362112 116362208 -165831456 - LTR16A1 LTR ERVL -141 316 213 301 214 82 82 chr1 116362571 116362730 -165830934 + L1M4 LINE L1 4905 5063 -1083 318 318 26 19 chr1 116365003 116365157 -165828507 - L3b LINE CR1 -314 1269 1115 245 111 22 0 chr1 116365673 116365718 -165827946 - MADE1 DNA Mariner -34 46 1 200 35 35 0 chr1 116366666 116366695 -165826969 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1596 190 38 6 chr1 116367297 116367639 -165826025 + MLT1A1 LTR MaLR 1 353 -12 440 246 210 9 chr1 116369037 116369261 -165824403 + HAL1 LINE L1 2134 2402 -105 3815 128 50 5 chr1 116369981 116370627 -165823037 + L1PA13 LINE L1 5486 6160 -3 435 110 33 55 chr1 116370629 116370720 -165822944 + L1MB4 LINE L1 6091 6179 -1 972 163 117 60 chr1 116371080 116371363 -165822301 + LTR2B LTR ERV1 34 332 -158 462 332 78 26 chr1 116371469 116371740 -165821924 + L1MCa LINE L1 1297 1581 -4845 26 30 0 0 chr1 116372340 116372373 -165821291 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr1 116372535 116372571 -165821093 + AT_rich Low_complexity Low_complexity 1 36 0 434 307 188 0 chr1 116372581 116372757 -165820907 + MIR SINE MIR 54 262 0 634 309 117 22 chr1 116373200 116373611 -165820053 - L2 LINE L2 -8 3305 2856 21 36 0 0 chr1 116374906 116374934 -165818730 + AT_rich Low_complexity Low_complexity 1 28 0 1965 144 16 19 chr1 116374980 116375293 -165818371 + AluJb SINE Alu 1 312 0 1925 175 24 9 chr1 116377432 116377770 -165815894 - MER2 DNA MER2_type 0 344 2 1256 243 110 72 chr1 116378570 116378793 -165814871 + MLT1E LTR MaLR 1 214 -379 1715 208 25 14 chr1 116378793 116379154 -165814510 + MLT1A1 LTR MaLR 1 365 0 1256 243 110 72 chr1 116379154 116379493 -165814171 + MLT1E LTR MaLR 214 593 0 983 299 145 34 chr1 116380165 116380953 -165812711 + L2 LINE L2 2013 2887 -427 3646 157 15 21 chr1 116380979 116381641 -165812023 - L1MC1 LINE L1 -17 6316 5659 1630 128 0 0 chr1 116381742 116381984 -165811680 - AluSq SINE Alu -71 242 1 180 239 0 0 chr1 116383677 116383723 -165809941 + MIR SINE MIR 107 152 -110 313 284 78 0 chr1 116383806 116383908 -165809756 - MLT1J2 LTR MaLR 0 450 341 786 199 0 0 chr1 116386057 116386218 -165807446 + L1MB2 LINE L1 6008 6168 -3 185 277 90 66 chr1 116387973 116388229 -165805435 - L2 LINE L2 -1533 1781 1520 287 294 37 59 chr1 116388623 116388759 -165804905 + L3 LINE CR1 768 900 -677 3973 210 2 18 chr1 116390149 116390628 -165803036 + L1PA15-16 LINE L1 2067 2527 -4322 2351 70 0 13 chr1 116390628 116390930 -165802734 - AluSg SINE Alu -12 298 1 3973 210 2 18 chr1 116390930 116391371 -165802293 + L1PA15-16 LINE L1 2527 2973 -3876 180 0 0 0 chr1 116391732 116391752 -165801912 + (TTG)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr1 116392722 116392748 -165800916 + AT_rich Low_complexity Low_complexity 1 26 0 503 141 13 0 chr1 116393106 116393184 -165800480 + MADE1 DNA Mariner 1 79 -1 186 103 0 0 chr1 116393397 116393426 -165800238 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 309 228 0 chr1 116396287 116396423 -165797241 + L2 LINE L2 3028 3194 -78 566 108 0 0 chr1 116396528 116396744 -165796920 + AluSp/q SINE Alu 209 424 0 578 258 48 30 chr1 116397747 116397914 -165795750 - MIR SINE MIR -57 205 36 656 269 43 55 chr1 116398862 116399118 -165794546 - HAL1 LINE L1 -756 1751 1499 412 281 55 7 chr1 116399816 116399962 -165793702 - HAL1 LINE L1 -1260 1247 1095 557 288 40 36 chr1 116400262 116400536 -165793128 - ERVL LTR ERVL -2049 3715 3441 337 331 67 47 chr1 116400520 116400774 -165792890 - ERVL LTR ERVL -3369 2395 2137 * 3720 111 16 52 chr1 116401292 116401791 -165791873 - MER4A LTR ERV1 0 600 126 2125 85 10 26 chr1 116401791 116402096 -165791568 + AluSp SINE Alu 1 300 -13 3720 111 16 52 chr1 116402096 116402216 -165791448 - MER4A LTR ERV1 -474 126 3 2253 200 39 2 chr1 116402827 116403312 -165790352 - L1MB5 LINE L1 -8 6166 5664 369 283 158 53 chr1 116405203 116405563 -165788101 + L2 LINE L2 1755 2152 -1162 23 0 0 0 chr1 116406368 116406391 -165787273 + AT_rich Low_complexity Low_complexity 1 23 0 1787 151 0 3 chr1 116406415 116406707 -165786957 - AluJb SINE Alu -20 292 2 1812 223 53 7 chr1 116406721 116407157 -165786507 - MER90 LTR ERV1 -5 609 154 639 325 36 72 chr1 116407258 116407390 -165786274 + L2 LINE L2 2871 3006 -266 1798 122 26 36 chr1 116407390 116407694 -165785970 - AluSg SINE Alu -3 307 7 639 325 36 72 chr1 116407694 116407976 -165785688 + L2 LINE L2 3006 3270 -2 358 323 0 8 chr1 116407991 116408121 -165785543 - LTR67 LTR ERVL 0 557 429 2054 161 44 37 chr1 116408672 116409205 -165784459 + MLT2A2 LTR ERVL 16 554 0 458 286 48 29 chr1 116409275 116409481 -165784183 + LTR16C LTR ERVL 281 490 -1 1046 213 127 65 chr1 116409697 116409973 -165783691 - MLT1C LTR MaLR -53 414 106 2062 108 3 3 chr1 116409973 116410269 -165783395 - AluSx SINE Alu -16 296 1 1046 213 127 65 chr1 116410269 116410377 -165783287 - MLT1C LTR MaLR -361 106 6 332 305 69 73 chr1 116412023 116412256 -165781408 + L2 LINE L2 2839 3070 -202 246 32 0 0 chr1 116412546 116412577 -165781087 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1010 53 0 15 chr1 116412676 116412808 -165780856 + L1PA4 LINE L1 6023 6152 -3 241 200 141 59 chr1 116412949 116413034 -165780630 - MIR3 SINE MIR -54 154 63 1923 160 0 6 chr1 116414895 116415208 -165778456 + AluJo SINE Alu 1 311 -1 210 216 0 0 chr1 116415452 116415489 -165778175 + polypurine Low_complexity Low_complexity 2 38 0 221 116 0 23 chr1 116418028 116418071 -165775593 + (AATAG)n Simple_repeat Simple_repeat 2 43 0 570 179 168 47 chr1 116418752 116418942 -165774722 - MIR SINE MIR -29 233 21 267 200 20 0 chr1 116418987 116419037 -165774627 - MIR SINE MIR -112 150 100 472 259 29 14 chr1 116419693 116419832 -165773832 - MLT1I LTR MaLR -16 393 253 355 270 6 28 chr1 116420252 116420415 -165773249 - MIR SINE MIR -46 216 3 353 317 22 58 chr1 116421462 116421686 -165771978 + L2 LINE L2 2967 3182 -131 594 281 125 27 chr1 116421705 116422035 -165771629 - MLT1J2 LTR MaLR -24 422 51 838 235 22 71 chr1 116422145 116422469 -165771195 - MLT1D LTR MaLR -193 312 5 217 277 0 0 chr1 116422472 116422519 -165771145 - MIR SINE MIR -167 95 49 533 340 165 47 chr1 116422861 116423608 -165770056 - L3 LINE CR1 -282 1295 461 414 336 8 0 chr1 116424770 116424901 -165768763 - MIR SINE MIR -118 144 13 197 315 45 34 chr1 116425581 116425670 -165767994 - L2 LINE L2 -1 3312 3223 737 164 74 17 chr1 116425717 116425892 -165767772 - MER96B DNA MER1_type? -1 410 116 1140 71 13 0 chr1 116426542 116426696 -165766968 + THE1A-int LTR MaLR 1425 1580 0 2588 88 3 22 chr1 116426696 116427058 -165766606 + THE1A LTR MaLR 1 355 0 1423 310 63 44 chr1 116427085 116427904 -165765760 - ERVL LTR ERVL -292 5472 4638 507 317 77 6 chr1 116428986 116429400 -165764264 - LTR16A LTR ERVL 0 450 1 556 148 0 74 chr1 116429508 116429630 -165764034 - L1MB3 LINE L1 -57 6126 6014 6243 166 14 2 chr1 116429733 116430957 -165762707 + L1P LINE L1 2879 4117 -2029 5911 172 11 2 chr1 116430958 116432150 -165761514 + L1P LINE L1 4201 5403 -743 1387 148 0 0 chr1 116432155 116432372 -165761292 - MSTA LTR MaLR 0 428 212 1645 147 15 87 chr1 116432502 116432836 -165760828 + AluJb SINE Alu 1 310 -2 200 321 52 52 chr1 116433029 116433163 -165760501 + MIR3 SINE MIR 74 207 -1 193 318 0 0 chr1 116434347 116434410 -165759254 - MIR3 SINE MIR -1 207 145 332 331 75 31 chr1 116439532 116439692 -165753972 + MIR SINE MIR 25 191 -71 751 197 7 0 chr1 116440557 116440694 -165752970 - AluSg/x SINE Alu -38 272 135 2088 146 0 7 chr1 116442783 116443091 -165750573 - AluSc SINE Alu -3 306 1 1900 153 0 17 chr1 116444152 116444447 -165749217 - AluSx SINE Alu -22 290 1 1841 206 91 7 chr1 116444447 116444898 -165748766 - MLT1H LTR MaLR -57 492 4 21 0 0 0 chr1 116447310 116447331 -165746333 + AT_rich Low_complexity Low_complexity 1 21 0 595 264 55 33 chr1 116448413 116448686 -165744978 - LTR16C LTR ERVL -8 483 205 608 176 66 0 chr1 116449819 116449955 -165743709 + L1MA4A LINE L1 6156 6300 -3 278 176 29 0 chr1 116450564 116450632 -165743032 - L1MA9 LINE L1 -2 6374 6305 1163 272 35 14 chr1 116450825 116451252 -165742412 - L1ME3 LINE L1 0 6162 5727 975 169 6 0 chr1 116451440 116451612 -165742052 - L1PA16 LINE L1 0 6166 5994 894 179 36 0 chr1 116451619 116451814 -165741850 - L1MA9 LINE L1 -84 6292 6091 2503 204 42 50 chr1 116451826 116451949 -165741715 - L1MA9 LINE L1 -401 5975 5852 294 73 0 0 chr1 116451949 116451990 -165741674 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 2503 204 42 50 chr1 116451990 116452161 -165741503 - L1MA9 LINE L1 -524 5852 5681 1912 130 24 7 chr1 116452161 116452453 -165741211 - AluSx SINE Alu -12 300 4 2503 204 42 50 chr1 116452453 116453211 -165740453 - L1MA9 LINE L1 -695 5681 4935 976 198 20 16 chr1 116453220 116453467 -165740197 - L1MA9 LINE L1 -1422 4788 4541 * 2527 248 51 37 chr1 116453440 116455018 -165738646 - L1MA9 LINE L1 -2970 3240 1637 519 220 14 0 chr1 116454996 116455139 -165738525 - L1M3c LINE L1 -4944 1190 1053 * 575 229 55 5 chr1 116455140 116455358 -165738306 + L1M3c LINE L1 1158 1386 -4755 1126 199 177 3 chr1 116457521 116457832 -165735832 - MLT1A1 LTR MaLR 0 365 1 180 0 0 0 chr1 116458321 116458341 -165735323 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1797 118 14 11 chr1 116459138 116459417 -165734247 + AluSp SINE Alu 1 280 -33 24 53 0 0 chr1 116460247 116460285 -165733379 + AT_rich Low_complexity Low_complexity 1 38 0 6312 121 14 1 chr1 116460607 116461646 -165732018 - L1MA3 LINE L1 0 6305 5254 428 156 89 0 chr1 116461660 116461750 -165731914 + MER4A LTR ERV1 1 98 -566 282 140 18 18 chr1 116461746 116461803 -165731861 + MER4A LTR ERV1 257 313 -351 * 2726 263 45 36 chr1 116461874 116462929 -165730735 + Harlequin LTR ERV1 649 1713 -5283 2772 220 34 3 chr1 116462989 116463615 -165730049 + Harlequin LTR ERV1 2147 2791 -6128 5129 203 66 58 chr1 116463618 116465396 -165728268 + Harlequin LTR ERV1 609 2332 -2885 21 36 0 0 chr1 116466255 116466283 -165727381 + AT_rich Low_complexity Low_complexity 1 28 0 1368 204 4 36 chr1 116467634 116467914 -165725750 - AluJo SINE Alu -41 271 1 455 282 171 19 chr1 116467949 116468165 -165725499 + MIR SINE MIR 6 254 -8 385 338 153 39 chr1 116468232 116468643 -165725021 + L3 LINE CR1 1057 1514 -63 192 287 64 32 chr1 116468944 116469038 -165724626 - MIR SINE MIR -11 251 155 25 0 0 0 chr1 116469084 116469109 -165724555 + AT_rich Low_complexity Low_complexity 1 25 0 264 130 0 0 chr1 116469816 116469862 -165723802 + (CA)n Simple_repeat Simple_repeat 2 47 0 715 191 8 0 chr1 116470740 116470866 -165722798 - FLAM_C SINE Alu -6 127 1 210 71 0 0 chr1 116473908 116473936 -165719728 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 3026 100 91 0 chr1 116474502 116474951 -165718713 + LTR2B LTR ERV1 1 490 0 1914 114 26 49 chr1 116474951 116475301 -165718363 + Harlequin LTR ERV1 1 342 -6554 * 8072 263 22 5 chr1 116475298 116477358 -165716306 + Harlequin LTR ERV1 766 2859 -4954 3313 200 8 3 chr1 116477351 116477975 -165715689 + Harlequin LTR ERV1 2961 3587 -4226 * 15577 250 11 12 chr1 116477985 116481506 -165712158 + Harlequin LTR ERV1 3841 7359 -454 1992 189 16 16 chr1 116481497 116481877 -165711787 + Harlequin LTR ERV1 6517 6896 0 * 3183 115 45 0 chr1 116481877 116482346 -165711318 + LTR2B LTR ERV1 1 490 0 260 297 129 15 chr1 116482582 116482839 -165710825 - L1ME LINE L1 -390 5731 5505 2083 114 0 10 chr1 116482839 116483146 -165710518 + AluY SINE Alu 1 304 -7 260 297 129 15 chr1 116483146 116483298 -165710366 - L1ME LINE L1 -616 5505 5273 1012 241 129 4 chr1 116483453 116483731 -165709933 - MER7A DNA MER2_type 0 346 36 836 187 137 0 chr1 116483797 116483979 -165709685 + MER2 DNA MER2_type 4 210 -135 22 56 0 0 chr1 116484210 116484246 -165709418 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr1 116484505 116484540 -165709124 + AT_rich Low_complexity Low_complexity 1 35 0 1563 167 4 11 chr1 116484570 116484840 -165708824 - AluSx SINE Alu -44 268 1 309 26 0 0 chr1 116485011 116485049 -165708615 + (TG)n Simple_repeat Simple_repeat 1 38 0 2000 288 154 46 chr1 116485395 116486752 -165706912 + L2 LINE L2 677 2179 -1135 24 0 0 0 chr1 116487212 116487236 -165706428 + AT_rich Low_complexity Low_complexity 1 24 0 221 380 29 29 chr1 116487934 116488066 -165705598 - MER5B DNA MER1_type -10 179 37 436 297 47 16 chr1 116488066 116488194 -165705470 + MER5B DNA MER1_type 3 134 -44 819 178 0 34 chr1 116488195 116488341 -165705323 - AluJb SINE Alu -24 288 148 3251 162 33 26 chr1 116488344 116489005 -165704659 + L1MA4A LINE L1 5634 6299 -4 238 269 39 19 chr1 116489420 116489524 -165704140 - HAL1 LINE L1 -1004 1503 1398 344 178 0 0 chr1 116489626 116489699 -165703965 - L1MA9 LINE L1 -2 7729 7657 1285 261 50 14 chr1 116489888 116490309 -165703355 - L1ME3 LINE L1 0 6162 5727 1012 156 6 6 chr1 116490496 116490676 -165702988 - L1PA16 LINE L1 0 6166 5987 687 220 65 0 chr1 116490681 116490867 -165702797 - L1MA9 LINE L1 -90 7641 7444 2573 222 51 40 chr1 116490877 116490996 -165702668 - L1MA9 LINE L1 -401 7330 7214 401 0 20 0 chr1 116490996 116491045 -165702619 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2573 222 51 40 chr1 116491045 116491207 -165702457 - L1MA9 LINE L1 -517 7214 7055 1529 142 0 9 chr1 116491207 116491440 -165702224 - AluSq SINE Alu -78 235 5 2573 222 51 40 chr1 116491440 116491886 -165701778 - L1MA9 LINE L1 -676 7055 6615 243 0 0 0 chr1 116491886 116491913 -165701751 + (TTAA)n Simple_repeat Simple_repeat 2 28 0 2573 222 51 40 chr1 116491913 116492610 -165701054 - L1MA9 LINE L1 -1116 6615 5896 * 2931 250 53 38 chr1 116492583 116494153 -165699511 - L1MA9 LINE L1 -2970 4595 2992 255 203 0 0 chr1 116494151 116494210 -165699454 - L1M3c LINE L1 -4963 2523 2465 * 654 213 50 18 chr1 116494226 116494447 -165699217 + L1M3c LINE L1 2513 2740 -4756 2042 118 3 16 chr1 116494933 116495237 -165698427 - AluY SINE Alu -11 300 1 31 44 0 0 chr1 116495803 116495848 -165697816 + AT_rich Low_complexity Low_complexity 1 45 0 899 214 59 0 chr1 116496938 116497125 -165696539 - MLT1A1 LTR MaLR -2 363 166 225 241 139 0 chr1 116497161 116497240 -165696424 - MLT1A1 LTR MaLR -300 90 1 230 136 23 0 chr1 116497346 116497390 -165696274 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 210 37 0 0 chr1 116497762 116497789 -165695875 + (TTG)n Simple_repeat Simple_repeat 1 27 0 667 145 0 3 chr1 116498597 116498818 -165694846 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr1 116499212 116499235 -165694429 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr1 116499261 116499308 -165694356 + AT_rich Low_complexity Low_complexity 1 47 0 881 133 48 6 chr1 116499977 116500142 -165693522 - L1MA3 LINE L1 0 6305 6134 231 263 12 12 chr1 116500249 116500329 -165693335 - L1M4 LINE L1 -1692 4454 4375 633 228 74 0 chr1 116500485 116500634 -165693030 - L1MA9 LINE L1 -2 6310 6151 516 262 27 22 chr1 116501109 116501292 -165692372 - L1M4 LINE L1 -1977 4169 3986 29 28 0 0 chr1 116501307 116501343 -165692321 + AT_rich Low_complexity Low_complexity 1 36 0 6218 263 89 43 chr1 116502310 116505348 -165688316 + L1MD1 LINE L1 1 3473 -3067 2137 101 0 11 chr1 116505348 116505657 -165688007 + AluSq SINE Alu 3 313 0 6218 263 89 43 chr1 116505657 116507034 -165686630 + L1MD1 LINE L1 3473 4785 -1755 23 54 0 0 chr1 116507034 116507071 -165686593 + AT_rich Low_complexity Low_complexity 1 37 0 2490 228 66 34 chr1 116507080 116507243 -165686421 + L1MD1 LINE L1 4929 5085 -1551 507 30 0 0 chr1 116507243 116507309 -165686355 + L1PA6 LINE L1 6089 6154 0 2490 228 66 34 chr1 116507309 116507970 -165685694 + L1MD1 LINE L1 5085 5723 -913 2616 113 8 0 chr1 116507970 116508342 -165685322 + THE1C LTR MaLR 1 375 0 2490 228 66 34 chr1 116508342 116509141 -165684523 + L1MD1 LINE L1 5723 6634 -2 22 35 0 0 chr1 116509880 116509909 -165683755 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 116509969 116509990 -165683674 + AT_rich Low_complexity Low_complexity 1 21 0 819 216 77 85 chr1 116510795 116511160 -165682504 - L1MC4 LINE L1 -1 8041 7680 1384 219 42 39 chr1 116511172 116511528 -165682136 - MLT1A1 LTR MaLR -8 357 1 1823 226 96 16 chr1 116511537 116512089 -165681575 - L1MC4 LINE L1 -371 7671 7076 1505 179 32 0 chr1 116512432 116512740 -165680924 - MER33 DNA MER1_type -6 318 1 368 261 103 43 chr1 116513352 116513536 -165680128 - MIR SINE MIR -29 233 39 209 330 167 50 chr1 116513721 116513942 -165679722 - L2 LINE L2 -35 3237 2991 33 56 0 0 chr1 116514810 116514864 -165678800 + AT_rich Low_complexity Low_complexity 1 54 0 8402 239 52 55 chr1 116515772 116516545 -165677119 + L1MA4A LINE L1 1 775 -6433 567 78 0 0 chr1 116516545 116516622 -165677042 + (TA)n Simple_repeat Simple_repeat 1 77 0 360 0 0 0 chr1 116516621 116516661 -165677003 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 8402 239 52 55 chr1 116516622 116518356 -165675308 + L1MA4A LINE L1 775 2512 -4696 1688 200 7 3 chr1 116518356 116518666 -165674998 - AluJb SINE Alu -1 311 1 8402 239 52 55 chr1 116518666 116518764 -165674900 + L1MA4A LINE L1 2512 2609 -4599 2233 105 7 3 chr1 116518764 116519069 -165674595 + AluSp SINE Alu 3 308 -5 8402 239 52 55 chr1 116519069 116519857 -165673807 + L1MA4A LINE L1 2609 3389 -3819 288 247 0 14 chr1 116519853 116519926 -165673738 + L1MA2 LINE L1 3599 3670 -3538 * 9686 189 31 4 chr1 116519928 116521986 -165671678 + L1MA2 LINE L1 4282 6395 -813 3740 150 43 1 chr1 116521988 116522680 -165670984 + L1MA2 LINE L1 6646 7366 0 6865 231 79 26 chr1 116522701 116526484 -165667180 + L1MA4A LINE L1 3384 7359 -6 335 283 106 50 chr1 116526490 116526688 -165666976 - MLT1H1 LTR MaLR 0 555 347 618 314 70 45 chr1 116526818 116527347 -165666317 + MLT1F LTR MaLR 1 542 0 1140 229 23 7 chr1 116527426 116527732 -165665932 - L1M4c LINE L1 -2424 5141 4831 405 200 64 80 chr1 116527859 116527984 -165665680 - L1MB3 LINE L1 -180 6003 5881 10031 205 49 21 chr1 116528022 116530472 -165663192 - L1M4c LINE L1 -3884 3683 1198 1542 265 86 50 chr1 116530498 116531316 -165662348 - L1 LINE L1 -3023 4542 3755 1980 151 10 0 chr1 116531316 116531621 -165662043 + AluSx SINE Alu 1 308 -4 2225 108 0 0 chr1 116531631 116531936 -165661728 + AluY SINE Alu 1 305 -6 1542 265 86 50 chr1 116531936 116532671 -165660993 - L1 LINE L1 -3818 3747 2811 258 237 54 0 chr1 116533218 116533311 -165660353 + L1ME LINE L1 5787 5884 -237 24 53 0 0 chr1 116533347 116533385 -165660279 + AT_rich Low_complexity Low_complexity 1 38 0 431 26 13 53 chr1 116533385 116533461 -165660203 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 1835 171 17 6 chr1 116533468 116533824 -165659840 + THE1B LTR MaLR 5 364 0 2895 168 18 9 chr1 116533826 116534431 -165659233 + MLT1F-int LTR MaLR 2 573 -1007 2012 88 0 25 chr1 116534547 116534831 -165658833 + THE1B-int LTR MaLR 1304 1580 0 2566 113 6 3 chr1 116534831 116535194 -165658470 + THE1B LTR MaLR 1 364 0 11541 86 22 8 chr1 116535280 116537666 -165655998 + L1PA6 LINE L1 3726 6143 -11 299 316 17 40 chr1 116537775 116537949 -165655715 - MLT1L LTR MaLR -8 607 438 21 71 0 0 chr1 116538279 116538321 -165655343 + AT_rich Low_complexity Low_complexity 1 42 0 271 192 14 68 chr1 116538550 116538623 -165655041 - MER46A DNA MER2_type -81 155 87 * 366 137 41 14 chr1 116538570 116538643 -165655021 + MER46A DNA MER2_type 161 235 -1 185 381 0 0 chr1 116540132 116540216 -165653448 + L2 LINE L2 3000 3083 -189 2211 114 0 0 chr1 116540675 116540983 -165652681 + AluSx SINE Alu 1 308 -4 210 246 35 0 chr1 116541251 116541308 -165652356 + GA-rich Low_complexity Low_complexity 2 60 0 1118 167 146 80 chr1 116541375 116541662 -165652002 + AluJb SINE Alu 7 312 0 246 250 46 28 chr1 116541810 116541918 -165651746 + HAL1 LINE L1 2398 2507 0 2253 325 69 37 chr1 116541921 116543394 -165650270 + L2 LINE L2 1701 3206 -107 867 308 70 40 chr1 116544664 116545119 -165648545 - MLT1J LTR MaLR -38 473 5 358 202 105 8 chr1 116545147 116545271 -165648393 + L1MC/D LINE L1 5306 5441 -2367 556 264 41 35 chr1 116545286 116545483 -165648181 + L1M4 LINE L1 14 211 -6331 3578 264 75 56 chr1 116545579 116546690 -165646974 + L1M4 LINE L1 971 2059 -4587 447 35 0 0 chr1 116546690 116546747 -165646917 + (TC)n Simple_repeat Simple_repeat 2 58 0 * 573 115 0 0 chr1 116546746 116546833 -165646831 + (TA)n Simple_repeat Simple_repeat 1 87 0 3578 264 75 56 chr1 116546747 116546850 -165646814 + L1M4 LINE L1 2059 2159 -4487 2071 134 0 0 chr1 116546850 116547141 -165646523 - AluSq SINE Alu -22 291 1 3578 264 75 56 chr1 116547141 116547748 -165645916 + L1M4 LINE L1 2159 2741 -3905 404 266 121 40 chr1 116547761 116548140 -165645524 + L1MC5 LINE L1 7508 7917 -44 726 326 91 52 chr1 116548148 116548908 -165644756 + L2 LINE L2 2527 3311 -2 209 33 33 0 chr1 116549859 116549889 -165643775 + (TA)n Simple_repeat Simple_repeat 1 31 0 6381 66 5 0 chr1 116549907 116550723 -165642941 - L1PA5 LINE L1 -25 6129 5310 10770 62 10 0 chr1 116550823 116552251 -165641413 - L1P LINE L1 -778 5368 3927 771 216 0 0 chr1 116552345 116552493 -165641171 + FRAM SINE Alu 1 145 -31 218 217 0 0 chr1 116552494 116552540 -165641124 + (TA)n Simple_repeat Simple_repeat 1 46 0 216 366 45 15 chr1 116552607 116552741 -165640923 + L3 LINE CR1 1249 1386 -191 226 65 0 0 chr1 116552830 116552861 -165640803 + L1MA2 LINE L1 2828 2858 -4707 * 8114 210 20 21 chr1 116552858 116554570 -165639094 + L1MA2 LINE L1 3223 4933 -2632 180 0 0 0 chr1 116554570 116554590 -165639074 + (TAA)n Simple_repeat Simple_repeat 2 21 0 8114 210 20 21 chr1 116554590 116555290 -165638374 + L1MA2 LINE L1 4933 5632 -1933 6013 153 35 15 chr1 116555289 116557111 -165636553 + L1MA2 LINE L1 5857 7716 -7 * 23 0 0 0 chr1 116557113 116557136 -165636528 + AT_rich Low_complexity Low_complexity 1 23 0 3181 192 29 16 chr1 116557325 116557519 -165636145 - Tigger1 DNA MER2_type 0 2418 2228 2042 145 0 0 chr1 116557519 116557815 -165635849 + AluSx SINE Alu 1 296 -16 3181 192 29 16 chr1 116557815 116558250 -165635414 - Tigger1 DNA MER2_type -190 2228 1781 4704 145 99 2 chr1 116558720 116559566 -165634098 - Tigger1 DNA MER2_type -625 1793 866 1011 215 16 6 chr1 116559566 116565444 -165628220 + ALR/Alpha Satellite centromeric 1 5935 0 327 49 0 0 chr1 116565446 116565487 -165628177 + (T)n Simple_repeat Simple_repeat 1 41 0 873 222 9 2 chr1 116565487 116569232 -165624432 + ALR/Alpha Satellite centromeric 1 3768 0 889 220 6 4 chr1 116569348 116571982 -165621682 + ALR/Alpha Satellite centromeric 1 2639 -51 981 199 4 2 chr1 116572130 116573818 -165619846 + ALR/Alpha Satellite centromeric 1 1691 -44 4287 181 29 19 chr1 116573839 116573955 -165619709 - Tigger1 DNA MER2_type -1591 827 714 2134 87 45 0 chr1 116573955 116574241 -165619423 - AluY SINE Alu -12 299 1 4287 181 29 19 chr1 116574241 116574943 -165618721 - Tigger1 DNA MER2_type -1704 714 1 31 26 0 0 chr1 116575101 116575139 -165618525 + AT_rich Low_complexity Low_complexity 1 38 0 800 229 33 6 chr1 116576274 116576457 -165617207 + MLT1E1 LTR MaLR 467 654 0 21 36 0 0 chr1 116576724 116576752 -165616912 + AT_rich Low_complexity Low_complexity 1 28 0 5192 214 38 7 chr1 116576848 116577776 -165615888 + L1MB1 LINE L1 3995 4973 -1173 1765 151 42 7 chr1 116577776 116577789 -165615875 - AluSx SINE Alu 0 312 301 297 0 0 49 chr1 116577789 116577830 -165615834 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 1765 151 42 7 chr1 116577830 116578100 -165615564 - AluSx SINE Alu -11 301 1 5192 214 38 7 chr1 116578100 116578406 -165615258 + L1MB1 LINE L1 4973 5268 -878 2602 186 13 105 chr1 116578531 116579584 -165614080 + L1MB1 LINE L1 5298 6183 0 28 29 0 0 chr1 116579598 116579633 -165614031 + AT_rich Low_complexity Low_complexity 1 35 0 183 162 0 0 chr1 116580272 116580309 -165613355 + (TG)n Simple_repeat Simple_repeat 1 37 0 371 298 110 11 chr1 116580506 116580697 -165612967 - MIR SINE MIR 0 262 53 4926 212 6 6 chr1 116580782 116581878 -165611786 + L1 LINE L1 3917 5011 -1135 2167 238 28 18 chr1 116581877 116582391 -165611273 + L1PA14 LINE L1 2333 2896 -4019 * 19414 34 4 9 chr1 116582391 116585581 -165608083 - L1PA4 LINE L1 0 6155 2977 2167 238 28 18 chr1 116585581 116585712 -165607952 + L1PA14 LINE L1 2896 3024 -3891 210 171 0 0 chr1 116585764 116585799 -165607865 + A-rich Low_complexity Low_complexity 2 36 0 13817 192 35 2 chr1 116585806 116589722 -165603942 + L1PA14 LINE L1 2974 6864 0 4476 178 28 49 chr1 116589793 116590123 -165603541 - L1MB8 LINE L1 -2 6176 5840 320 0 0 24 chr1 116590123 116590164 -165603500 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2099 103 3 3 chr1 116590164 116590446 -165603218 - AluSp SINE Alu -31 282 1 4476 178 28 49 chr1 116590446 116590992 -165602672 - L1MB8 LINE L1 -337 5841 5318 2129 129 0 0 chr1 116590992 116591302 -165602362 + AluSg SINE Alu 1 310 0 4476 178 28 49 chr1 116591302 116591683 -165601981 - L1MB8 LINE L1 -860 5318 4930 4465 142 40 80 chr1 116591741 116592799 -165600865 + L1PA16 LINE L1 5144 6157 -9 211 420 45 8 chr1 116593014 116593366 -165600298 + L2 LINE L2 1822 2186 -1128 2141 111 7 7 chr1 116593776 116594082 -165599582 - AluSp SINE Alu -7 306 1 298 299 0 0 chr1 116594888 116594965 -165598699 + Charlie8 DNA MER1_type 143 219 -2198 338 250 0 12 chr1 116595114 116595194 -165598470 + Charlie8 DNA MER1_type 368 446 -1971 1297 42 0 18 chr1 116595221 116595388 -165598276 - L1PA5 LINE L1 -3 6151 5988 2447 136 21 40 chr1 116596066 116596494 -165597170 + Tigger2a DNA MER2_type 15 434 0 1030 173 12 0 chr1 116596663 116596836 -165596828 + FAM SINE Alu 1 175 0 22 35 0 0 chr1 116597032 116597061 -165596603 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr1 116597109 116597145 -165596519 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr1 116597254 116597296 -165596368 + AT_rich Low_complexity Low_complexity 1 42 0 803 257 118 74 chr1 116599289 116599706 -165593958 - LTR16A LTR ERVL 0 450 16 260 343 159 50 chr1 116601596 116602054 -165591610 - L2 LINE L2 -583 2731 2224 200 167 48 0 chr1 116602510 116602552 -165591112 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2170 50 0 63 chr1 116602874 116603196 -165590468 - AluY SINE Alu 0 303 1 326 276 129 9 chr1 116603449 116603565 -165590099 + MLT1K LTR MaLR 459 588 0 216 355 121 39 chr1 116603631 116603963 -165589701 + L2 LINE L2 2507 2865 -449 274 323 100 23 chr1 116604226 116604356 -165589308 + L2 LINE L2 3121 3260 -12 232 143 0 41 chr1 116604780 116604829 -165588835 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 33 66 0 0 chr1 116604972 116605033 -165588631 + AT_rich Low_complexity Low_complexity 1 61 0 1611 232 89 9 chr1 116605034 116605482 -165588182 - MLT2B1 LTR ERVL -36 484 1 771 174 67 62 chr1 116607352 116607547 -165586117 - AluJo SINE Alu -30 282 87 1548 177 49 44 chr1 116607575 116607960 -165585704 + MLT1B LTR MaLR 4 390 0 524 264 17 11 chr1 116608478 116608652 -165585012 + MER5B DNA MER1_type 2 176 -2 299 329 193 8 chr1 116608674 116608917 -165584747 - L2 LINE L2 -396 2918 2631 1920 187 5 50 chr1 116609075 116609471 -165584193 - MLT1B LTR MaLR 0 390 13 24 32 0 0 chr1 116609558 116609589 -165584075 + AT_rich Low_complexity Low_complexity 1 31 0 272 286 79 34 chr1 116609610 116609788 -165583876 - L1MEd LINE L1 -4974 1145 960 26 0 0 0 chr1 116610192 116610218 -165583446 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr1 116610687 116610715 -165582949 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr1 116611152 116611175 -165582489 + (TC)n Simple_repeat Simple_repeat 2 24 0 208 64 64 21 chr1 116611594 116611641 -165582023 + (TA)n Simple_repeat Simple_repeat 2 50 0 1753 195 98 0 chr1 116611646 116612005 -165581659 - MSTD LTR MaLR -2 394 1 369 127 0 0 chr1 116612005 116612060 -165581604 + L1MB2 LINE L1 5927 5981 -187 508 247 6 84 chr1 116612191 116612357 -165581307 + MLT1D LTR MaLR 20 172 -333 615 155 52 0 chr1 116612357 116612473 -165581191 + L1MB2 LINE L1 5985 6106 -65 273 29 0 0 chr1 116612881 116612915 -165580749 + (TG)n Simple_repeat Simple_repeat 1 34 0 308 220 22 44 chr1 116613515 116613606 -165580058 - MLT1K LTR MaLR -13 575 487 22 0 0 0 chr1 116613683 116613705 -165579959 + AT_rich Low_complexity Low_complexity 1 22 0 1765 157 19 28 chr1 116613877 116614195 -165579469 + MLT1A1 LTR MaLR 1 315 -50 1539 210 114 48 chr1 116614274 116614712 -165578952 - MLT1D LTR MaLR -19 486 20 341 232 89 95 chr1 116615012 116615180 -165578484 - L2 LINE L2 -3147 167 1 217 348 55 55 chr1 116615299 116615463 -165578201 - L2 LINE L2 -552 2762 2599 189 303 162 30 chr1 116615692 116615890 -165577774 - L2 LINE L2 -89 3224 3001 229 235 62 25 chr1 116615962 116616043 -165577621 - MLT1K LTR MaLR -160 428 345 25 31 0 0 chr1 116617958 116617990 -165575674 + AT_rich Low_complexity Low_complexity 1 32 0 303 179 244 0 chr1 116618244 116618322 -165575342 - L1ME1 LINE L1 -13 6153 6057 7018 212 32 14 chr1 116618535 116619216 -165574448 - L1PA16 LINE L1 0 6166 5499 1622 172 8 0 chr1 116619216 116619484 -165574180 + AluSx SINE Alu 36 305 -7 7018 212 32 14 chr1 116619484 116621417 -165572247 - L1PA16 LINE L1 -667 5499 3503 22 35 0 0 chr1 116621421 116621450 -165572214 + AT_rich Low_complexity Low_complexity 1 29 0 794 41 0 0 chr1 116621464 116621562 -165572102 + L1P LINE L1 1 98 -6048 * 26067 40 43 2 chr1 116621529 116624862 -165568802 + L1P LINE L1 578 4045 -2101 3836 237 35 15 chr1 116624860 116626029 -165567635 - L1 LINE L1 -2088 4058 2867 * 3313 32 0 8 chr1 116627510 116627912 -165565752 - L1PA5 LINE L1 0 6154 5756 856 220 55 0 chr1 116628260 116628460 -165565204 - L1 LINE L1 -3267 2879 2669 615 241 111 32 chr1 116628603 116628919 -165564745 - LTR37B LTR ERV1 -2 466 126 23 68 0 0 chr1 116629351 116629395 -165564269 + AT_rich Low_complexity Low_complexity 1 44 0 283 322 35 17 chr1 116630717 116630832 -165562832 - MIR3 SINE MIR -10 198 82 2230 43 40 10 chr1 116630903 116631202 -165562462 - AluY SINE Alu -3 308 1 384 361 36 40 chr1 116631431 116631680 -165561984 - L2 LINE L2 -239 3074 2827 630 300 11 11 chr1 116631691 116631871 -165561793 - MLT1C LTR MaLR 0 467 288 357 198 45 36 chr1 116631845 116631956 -165561708 - MLT1C LTR MaLR -286 181 70 * 2002 282 89 12 chr1 116632011 116632696 -165560968 - L2 LINE L2 -517 2797 2060 2136 110 3 7 chr1 116632702 116633002 -165560662 + AluSq SINE Alu 3 301 -12 189 333 31 31 chr1 116633022 116633118 -165560546 + MIR SINE MIR 164 259 -3 242 286 0 0 chr1 116633192 116633248 -165560416 + L2 LINE L2 3258 3313 0 361 379 43 12 chr1 116633467 116633723 -165559941 + L2 LINE L2 2525 2788 -526 291 354 0 0 chr1 116633825 116633924 -165559740 - L2 LINE L2 -18 3295 3197 285 254 212 0 chr1 116634251 116634369 -165559295 + L2 LINE L2 3171 3313 0 21 0 0 0 chr1 116635671 116635692 -165557972 + AT_rich Low_complexity Low_complexity 1 21 0 232 379 21 0 chr1 116636484 116636579 -165557085 + L2 LINE L2 2565 2661 -653 3497 181 20 27 chr1 116636582 116637030 -165556634 - MER67C LTR ERV1 -5 705 262 357 82 0 0 chr1 116637030 116637079 -165556585 + (TG)n Simple_repeat Simple_repeat 2 50 0 3497 181 20 27 chr1 116637079 116637337 -165556327 - MER67C LTR ERV1 -448 262 4 344 259 121 46 chr1 116637340 116637514 -165556150 + L2 LINE L2 2658 2844 -470 842 141 135 25 chr1 116637534 116637697 -165555967 + MSTA LTR MaLR 1 181 -247 569 333 57 16 chr1 116637708 116638096 -165555568 + L1MC4a LINE L1 5519 5922 -1886 274 399 26 10 chr1 116638709 116638902 -165554762 - L3 LINE CR1 -981 596 401 1454 87 0 99 chr1 116639226 116639478 -165554186 + MER30 DNA MER1_type 4 230 0 217 333 136 25 chr1 116639696 116639757 -165553907 - L3 LINE CR1 -1213 364 311 426 53 0 0 chr1 116639757 116639814 -165553850 + (CA)n Simple_repeat Simple_repeat 1 57 0 217 333 136 25 chr1 116639814 116639914 -165553750 - L3 LINE CR1 -1266 311 185 524 333 43 24 chr1 116640310 116640565 -165553099 - MIR SINE MIR -1 261 2 189 107 0 0 chr1 116641495 116641523 -165552141 + (T)n Simple_repeat Simple_repeat 1 28 0 224 328 84 8 chr1 116642246 116642365 -165551299 - L3 LINE CR1 -16 1561 1434 188 265 20 0 chr1 116643108 116643157 -165550507 + L2 LINE L2 3262 3311 -2 503 345 133 41 chr1 116643489 116644148 -165549516 + HAL1 LINE L1 5 724 -1783 252 278 242 22 chr1 116644279 116644405 -165549259 + HAL1 LINE L1 755 852 -1655 321 47 0 0 chr1 116644405 116644448 -165549216 + (CA)n Simple_repeat Simple_repeat 1 43 0 252 278 242 22 chr1 116644448 116644598 -165549066 + HAL1 LINE L1 852 1092 -1415 322 249 308 12 chr1 116644603 116644772 -165548892 + HAL1 LINE L1 1200 1418 -1089 34 0 0 0 chr1 116645121 116645155 -165548509 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr1 116646930 116646963 -165546701 + AT_rich Low_complexity Low_complexity 1 33 0 201 240 13 27 chr1 116647098 116647173 -165546491 + (TA)n Simple_repeat Simple_repeat 1 74 0 388 326 64 7 chr1 116647799 116647940 -165545724 + L2 LINE L2 3161 3309 -4 192 97 0 0 chr1 116650339 116650370 -165543294 + (CA)n Simple_repeat Simple_repeat 1 31 0 198 364 64 21 chr1 116650451 116650591 -165543073 + L2 LINE L2 3162 3307 -6 290 253 158 0 chr1 116651014 116651109 -165542555 - MLT1K LTR MaLR -25 563 454 2198 79 4 4 chr1 116651698 116651976 -165541688 - AluSp SINE Alu -24 289 12 203 250 180 30 chr1 116652646 116652746 -165540918 - MIR SINE MIR -127 135 21 9618 240 37 9 chr1 116652864 116656836 -165536828 - L1MC1 LINE L1 -16 6317 2237 307 337 11 0 chr1 116656839 116656931 -165536733 + LTR8A LTR ERV1 635 727 0 436 331 40 31 chr1 116657753 116658079 -165535585 - L1ME LINE L1 -473 5648 5320 2092 208 80 72 chr1 116659081 116659619 -165534045 - MER52A LTR ERV1 -5 1750 1209 * 3251 231 167 35 chr1 116659595 116660832 -165532832 - MER52A LTR ERV1 -304 1349 2 22 56 0 0 chr1 116660907 116660943 -165532721 + AT_rich Low_complexity Low_complexity 1 36 0 505 297 40 29 chr1 116661166 116661341 -165532323 - MIR SINE MIR -12 250 74 237 273 98 8 chr1 116662886 116662903 -165530761 - L1MA10 LINE L1 -4 6330 6314 1641 237 57 92 chr1 116662903 116663201 -165530463 - L1ME1 LINE L1 -13 6087 5780 2102 97 40 3 chr1 116663201 116663501 -165530163 + AluY SINE Alu 1 311 0 1641 237 57 92 chr1 116663501 116663939 -165529725 - L1ME1 LINE L1 -320 5780 5377 2606 293 60 37 chr1 116664101 116665028 -165528636 - L1ME1 LINE L1 -931 5149 4245 1160 182 105 80 chr1 116665028 116665467 -165528197 - LTR7 LTR ERV1 0 450 1 2606 293 60 37 chr1 116665467 116666493 -165527171 - L1ME1 LINE L1 -1835 4245 3242 * 8380 233 37 41 chr1 116666478 116669815 -165523849 - L1MB3 LINE L1 -3 6416 3071 2437 73 0 6 chr1 116669815 116670128 -165523536 - AluY SINE Alu 0 311 1 8380 233 37 41 chr1 116670128 116670690 -165522974 - L1MB3 LINE L1 -3348 3071 2508 761 165 24 59 chr1 116670684 116670854 -165522810 - L1MB3 LINE L1 -6206 178 15 * 2200 91 3 0 chr1 116670864 116671160 -165522504 - AluY SINE Alu -13 298 2 1600 250 117 27 chr1 116671160 116672015 -165521649 - L1ME1 LINE L1 -2797 3283 2352 180 0 0 0 chr1 116672020 116672040 -165521624 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1273 250 0 0 chr1 116672040 116672308 -165521356 - AluJo SINE Alu -32 280 13 27 29 0 0 chr1 116672380 116672414 -165521250 + AT_rich Low_complexity Low_complexity 1 34 0 1254 292 102 32 chr1 116672502 116674275 -165519389 - L1ME1 LINE L1 -4339 1922 20 207 69 0 0 chr1 116674350 116674379 -165519285 + (TAA)n Simple_repeat Simple_repeat 1 29 0 33 0 0 0 chr1 116674684 116674717 -165518947 + AT_rich Low_complexity Low_complexity 1 33 0 992 166 12 6 chr1 116676000 116676169 -165517495 + MER70A LTR ERVL 303 472 0 342 345 53 6 chr1 116676234 116676405 -165517259 - L1ME4a LINE L1 -218 5903 5725 752 164 0 0 chr1 116676437 116676559 -165517105 + FLAM_C SINE Alu 1 122 -21 279 206 129 24 chr1 116676781 116676951 -165516713 - L1ME4a LINE L1 -2359 5449 5262 2285 194 12 24 chr1 116677137 116677646 -165516018 - L1MB1 LINE L1 -2 6166 5664 717 307 57 48 chr1 116677719 116678051 -165515613 + L2 LINE L2 2600 2934 -380 402 370 56 36 chr1 116678049 116678441 -165515223 - L2 LINE L2 -741 2573 2174 * 207 200 0 0 chr1 116678957 116679002 -165514662 + T-rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr1 116679087 116679123 -165514541 + AT_rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr1 116679391 116679436 -165514228 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr1 116680351 116680376 -165513288 + AT_rich Low_complexity Low_complexity 1 25 0 1122 131 11 0 chr1 116680903 116681079 -165512585 + L1PA10 LINE L1 5991 6168 0 999 304 30 3 chr1 116681837 116682169 -165511495 + MER58B DNA MER1_type 1 341 0 35 0 0 0 chr1 116683126 116683161 -165510503 + AT_rich Low_complexity Low_complexity 1 35 0 351 268 191 22 chr1 116683823 116684004 -165509660 - LTR16B LTR ERVL 0 464 253 662 101 0 0 chr1 116684004 116684093 -165509571 - MLT1B LTR MaLR 0 390 302 349 228 76 0 chr1 116685123 116685215 -165508449 - L2 LINE L2 -471 2843 2745 216 97 0 0 chr1 116685429 116685460 -165508204 + (TG)n Simple_repeat Simple_repeat 2 32 0 999 137 21 68 chr1 116685695 116685929 -165507735 - MER31A LTR ERV1 0 485 263 1585 219 23 9 chr1 116685951 116686293 -165507371 + MLT1A1 LTR MaLR 19 365 0 1052 193 14 72 chr1 116686293 116686578 -165507086 - MER31A LTR ERV1 -215 270 3 4518 247 64 28 chr1 116686872 116688134 -165505530 + L1M4 LINE L1 3636 4851 -1295 180 0 0 0 chr1 116688134 116688154 -165505510 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4518 247 64 28 chr1 116688154 116688357 -165505307 + L1M4 LINE L1 4851 5045 -1101 1658 188 7 0 chr1 116688357 116688661 -165505003 + AluJb SINE Alu 1 306 -6 4518 247 64 28 chr1 116688661 116688759 -165504905 + L1M4 LINE L1 5045 5256 -890 202 179 0 149 chr1 116688947 116689014 -165504650 + MIR SINE MIR 120 176 -86 26 30 0 0 chr1 116689179 116689212 -165504452 + AT_rich Low_complexity Low_complexity 1 33 0 197 277 109 50 chr1 116689615 116689734 -165503930 + MIR SINE MIR 35 160 -102 1549 214 3 3 chr1 116690059 116690358 -165503306 - AluJo SINE Alu -9 303 5 346 215 182 50 chr1 116690377 116690498 -165503166 + L2 LINE L2 3177 3313 0 214 319 69 0 chr1 116691634 116691706 -165501958 - L2 LINE L2 -36 3236 3160 2156 181 105 23 chr1 116692333 116692847 -165500817 + L1MA8 LINE L1 5733 6288 -3 261 304 26 61 chr1 116693217 116693332 -165500332 - L2 LINE L2 -217 3055 2945 2754 167 69 0 chr1 116694663 116694788 -165498876 - L1M2 LINE L1 -679 5621 5506 264 59 0 0 chr1 116694788 116694822 -165498842 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2754 167 69 0 chr1 116694822 116695473 -165498191 - L1M2 LINE L1 -794 5506 4792 3334 175 8 14 chr1 116695473 116696106 -165497558 + L1MA6 LINE L1 5660 6290 -10 23 0 0 0 chr1 116696110 116696133 -165497531 + AT_rich Low_complexity Low_complexity 1 23 0 588 347 40 0 chr1 116696720 116696968 -165496696 - MIR SINE MIR 0 262 5 216 316 119 23 chr1 116698036 116698213 -165495451 - MIR SINE MIR -13 249 56 244 348 8 0 chr1 116699198 116699316 -165494348 - L1MC4 LINE L1 -143 7899 7781 394 255 105 5 chr1 116699525 116699721 -165493943 - L1MC5 LINE L1 -393 7415 7246 600 349 20 0 chr1 116699870 116700122 -165493542 - L1MC4 LINE L1 -966 7076 6820 329 240 159 56 chr1 116700130 116700451 -165493213 + L1MC4a LINE L1 5901 6254 -1554 589 262 53 30 chr1 116700453 116700678 -165492986 + MLT1F1 LTR MaLR 8 244 -346 21 57 0 0 chr1 116701532 116701567 -165492097 + AT_rich Low_complexity Low_complexity 1 35 0 367 285 131 30 chr1 116703068 116703527 -165490137 + L1ME3A LINE L1 4802 5306 -840 691 277 88 19 chr1 116703633 116703940 -165489724 + L1ME3A LINE L1 5397 5724 -438 1891 208 18 65 chr1 116703943 116704433 -165489231 + MER66B LTR ERV1 20 486 0 395 288 47 0 chr1 116704461 116704652 -165489012 + L1ME3A LINE L1 5751 5950 -220 355 323 84 22 chr1 116704687 116704913 -165488751 + L1ME3A LINE L1 5931 6170 0 522 339 44 30 chr1 116704952 116705315 -165488349 + MLT1J1 LTR MaLR 18 385 -61 29014 121 8 18 chr1 116705564 116711200 -165482464 - L1PA8 LINE L1 0 6487 939 1293 151 0 0 chr1 116711196 116711388 -165482276 - L1PA8 LINE L1 -6260 201 10 * 17841 187 27 11 chr1 116711945 116715972 -165477692 - L1MA2 LINE L1 0 7723 3509 1806 164 148 0 chr1 116715972 116716345 -165477319 + MSTA LTR MaLR 1 428 0 17841 187 27 11 chr1 116716345 116719689 -165473975 - L1MA2 LINE L1 -4214 3509 221 491 183 0 0 chr1 116719689 116719771 -165473893 - MSTA LTR MaLR 0 428 347 451 180 192 11 chr1 116719760 116719889 -165473775 - MSTA LTR MaLR -288 169 2 * 2968 168 24 27 chr1 116719889 116720436 -165473228 - MSTA-int LTR MaLR 0 1580 1036 813 307 47 34 chr1 116720449 116720976 -165472688 - L1MEc LINE L1 -4423 1973 1440 2755 285 102 7 chr1 116721115 116722205 -165471459 - L1MEc LINE L1 -5166 1230 38 27 29 0 0 chr1 116722657 116722691 -165470973 + AT_rich Low_complexity Low_complexity 1 34 0 830 123 26 22 chr1 116723959 116724187 -165469477 + CT-rich Low_complexity Low_complexity 1 229 0 521 250 0 0 chr1 116724190 116724302 -165469362 - AluJ SINE Alu 0 312 201 572 193 9 0 chr1 116724312 116724421 -165469243 - AluJ SINE Alu -202 110 1 5319 263 38 12 chr1 116724541 116725151 -165468513 + L1M4c LINE L1 1971 2564 -3818 572 91 0 0 chr1 116725151 116725228 -165468436 - MADE1 DNA Mariner -3 77 1 5319 263 38 12 chr1 116725228 116725899 -165467765 + L1M4c LINE L1 2564 3216 -3166 189 0 0 0 chr1 116725899 116725920 -165467744 + (CAA)n Simple_repeat Simple_repeat 2 22 0 5319 263 38 12 chr1 116725920 116726857 -165466807 + L1M4c LINE L1 3216 4293 -2089 583 137 29 0 chr1 116726850 116726952 -165466712 + L1MB4 LINE L1 5723 5827 -353 * 363 194 71 20 chr1 116726974 116727072 -165466592 + MIR SINE MIR 148 250 -12 187 175 25 25 chr1 116727038 116727078 -165466586 + L2 LINE L2 3261 3300 -13 * 28 29 0 0 chr1 116727452 116727487 -165466177 + AT_rich Low_complexity Low_complexity 1 35 0 199 256 122 0 chr1 116727587 116727669 -165465995 - MIR SINE MIR -97 165 74 230 290 57 52 chr1 116729795 116729988 -165463676 - L2 LINE L2 -15 3298 3105 28 29 0 0 chr1 116731035 116731070 -165462594 + AT_rich Low_complexity Low_complexity 1 35 0 32 43 0 0 chr1 116731509 116731555 -165462109 + AT_rich Low_complexity Low_complexity 1 46 0 200 216 0 0 chr1 116731857 116731894 -165461770 + T-rich Low_complexity Low_complexity 2 38 0 21 57 0 0 chr1 116732095 116732130 -165461534 + AT_rich Low_complexity Low_complexity 1 35 0 27 81 0 0 chr1 116732470 116732532 -165461132 + AT_rich Low_complexity Low_complexity 1 62 0 363 316 12 36 chr1 116733074 116733242 -165460422 - MIR SINE MIR -50 212 49 24 53 0 0 chr1 116733543 116733581 -165460083 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr1 116733636 116733672 -165459992 + AT_rich Low_complexity Low_complexity 1 36 0 5471 19 0 0 chr1 116734732 116735438 -165458226 - L1P1 LINE L1 -705 5450 4745 * 6163 10 0 0 chr1 116735436 116736133 -165457531 + L1HS LINE L1 5458 6154 -1 273 140 0 0 chr1 116736135 116736192 -165457472 + (A)n Simple_repeat Simple_repeat 1 57 0 198 103 0 0 chr1 116736205 116736234 -165457430 + (A)n Simple_repeat Simple_repeat 1 29 0 1019 235 0 0 chr1 116737912 116738112 -165455552 - MLT1C LTR MaLR 0 467 268 181 320 20 20 chr1 116738119 116738219 -165455445 - MIR SINE MIR -63 199 100 1288 157 35 0 chr1 116738249 116738478 -165455186 - MLT1C LTR MaLR -202 265 29 504 276 0 26 chr1 116738516 116738668 -165454996 + MIR SINE MIR 100 247 -15 1704 271 35 40 chr1 116739592 116740242 -165453422 - L1ME1 LINE L1 -5 6161 5515 229 214 54 18 chr1 116740549 116740605 -165453059 - MLT1I LTR MaLR -254 155 98 801 254 5 19 chr1 116740612 116740817 -165452847 + L1MDa LINE L1 81 282 -6258 25 0 0 0 chr1 116740817 116740842 -165452822 + AT_rich Low_complexity Low_complexity 1 25 0 935 98 8 0 chr1 116740871 116740993 -165452671 - AluY SINE Alu -188 123 1 247 292 21 10 chr1 116741080 116741176 -165452488 - L1ME1 LINE L1 -2427 3719 3623 * 5881 192 15 137 chr1 116741173 116743983 -165449681 - L1P4 LINE L1 -495 6373 3926 7220 106 11 16 chr1 116744003 116745065 -165448599 - MER11C LTR ERVK -14 1057 1 11193 208 49 19 chr1 116745074 116748102 -165445562 - L1P4 LINE L1 -2930 3919 798 1138 287 20 20 chr1 116748107 116748553 -165445111 + L1M4 LINE L1 3732 4177 -1969 297 0 0 0 chr1 116748657 116748690 -165444974 + (CA)n Simple_repeat Simple_repeat 1 33 0 931 293 17 14 chr1 116748690 116748984 -165444680 - LTR52 LTR ERVL -92 329 35 1013 116 7 7 chr1 116748984 116749131 -165444533 + AluSc SINE Alu 1 147 -162 1861 275 42 46 chr1 116749131 116750085 -165443579 + L1M4 LINE L1 4442 5391 -755 1454 227 47 87 chr1 116750084 116750599 -165443065 + L1ME LINE L1 5326 5819 -347 * 995 156 17 28 chr1 116750628 116750808 -165442856 - THE1B LTR MaLR -186 178 1 1079 151 44 20 chr1 116750808 116751060 -165442604 - L1M4c LINE L1 -4256 2128 1871 1896 169 16 27 chr1 116751070 116751438 -165442226 - THE1B LTR MaLR 0 364 1 2167 96 10 0 chr1 116751438 116751741 -165441923 - THE1B-int LTR MaLR 0 1580 1275 5607 128 90 1 chr1 116751745 116752204 -165441460 - THE1B-int LTR MaLR -595 985 568 480 35 0 0 chr1 116752204 116752262 -165441402 + (TA)n Simple_repeat Simple_repeat 2 59 0 5607 128 90 1 chr1 116752262 116752706 -165440958 - THE1B-int LTR MaLR -1012 568 2 1538 137 16 37 chr1 116752709 116753020 -165440644 - THE1B LTR MaLR -2 362 3 3809 195 44 55 chr1 116753020 116754044 -165439620 - L1M4c LINE L1 -4254 2130 1118 3528 199 50 10 chr1 116754042 116754766 -165438898 - L1M4c LINE L1 -5616 768 16 * 189 0 0 0 chr1 116754895 116754916 -165438748 + (TA)n Simple_repeat Simple_repeat 2 22 0 255 31 0 0 chr1 116755293 116755325 -165438339 + (GA)n Simple_repeat Simple_repeat 1 32 0 11209 119 27 32 chr1 116756238 116758202 -165435462 + L1P3 LINE L1 11 1999 -4462 543 283 65 7 chr1 116758742 116758880 -165434784 - MER5B DNA MER1_type -1 177 32 464 301 5 87 chr1 116759175 116759371 -165434293 + MER5A DNA MER1_type 1 180 -9 28 0 0 0 chr1 116759942 116759970 -165433694 + AT_rich Low_complexity Low_complexity 1 28 0 277 344 103 10 chr1 116759981 116760176 -165433488 + L2 LINE L2 2574 2786 -528 534 298 60 65 chr1 116760271 116760640 -165433024 + MER20B DNA MER1_type 48 414 -369 1950 140 0 0 chr1 116760988 116761319 -165432345 + AluSx SINE Alu 1 331 0 21 0 0 0 chr1 116762193 116762214 -165431450 + AT_rich Low_complexity Low_complexity 1 21 0 298 356 67 17 chr1 116762629 116762809 -165430855 + MIR SINE MIR 74 262 0 33 25 0 0 chr1 116763333 116763373 -165430291 + AT_rich Low_complexity Low_complexity 1 40 0 29 0 0 0 chr1 116763627 116763656 -165430008 + AT_rich Low_complexity Low_complexity 1 29 0 877 177 7 0 chr1 116763915 116764056 -165429608 - FRAM SINE Alu -28 148 7 905 175 6 0 chr1 116764489 116764655 -165429009 + MER2 DNA MER2_type 44 210 -135 27 0 0 0 chr1 116764688 116764715 -165428949 + AT_rich Low_complexity Low_complexity 1 27 0 10336 152 19 8 chr1 116764715 116767712 -165425952 - L1MA2 LINE L1 -1 7722 4687 7088 203 17 53 chr1 116767721 116769314 -165424350 - L1MA2 LINE L1 -6017 1548 13 507 299 92 22 chr1 116769459 116769643 -165424021 + MLT1H1 LTR MaLR 318 514 -41 2048 133 0 3 chr1 116771268 116771589 -165422075 - AluSx SINE Alu 0 320 1 952 378 82 14 chr1 116773661 116774564 -165419100 + L2 LINE L2 2329 3309 -4 23 0 0 0 chr1 116774673 116774696 -165418968 + AT_rich Low_complexity Low_complexity 1 23 0 504 239 17 8 chr1 116775091 116775208 -165418456 + MER20 DNA MER1_type 7 124 -95 1864 158 46 27 chr1 116775208 116775575 -165418089 - THE1C LTR MaLR -1 374 1 1796 105 4 11 chr1 116775575 116775841 -165417823 - THE1C-int LTR MaLR 0 1580 1317 1167 197 17 13 chr1 116775841 116776080 -165417584 - MER82 DNA MER2_type -389 264 25 1924 122 22 29 chr1 116776240 116776551 -165417113 + AluSc SINE Alu 1 309 0 438 20 0 0 chr1 116776554 116776605 -165417059 + (TA)n Simple_repeat Simple_repeat 1 51 0 1486 102 0 0 chr1 116776699 116776895 -165416769 + AluY SINE Alu 100 295 -16 1464 222 4 0 chr1 116776926 116777201 -165416463 - MLT2B2 LTR ERVL -237 278 3 2129 113 0 3 chr1 116777202 116777502 -165416162 + AluSc SINE Alu 1 299 -10 21 89 0 0 chr1 116777827 116777883 -165415781 + AT_rich Low_complexity Low_complexity 1 56 0 258 218 0 0 chr1 116778296 116778351 -165415313 + L2 LINE L2 3255 3309 -4 244 351 88 44 chr1 116779869 116780165 -165413499 - L2 LINE L2 0 3313 3005 244 226 156 91 chr1 116781715 116781958 -165411706 + LTR16A1 LTR ERVL 3 261 -196 * 312 256 26 0 chr1 116781943 116782021 -165411643 + LTR16A1 LTR ERVL 376 455 -2 320 378 59 21 chr1 116782155 116782629 -165411035 + HERV16 LTR ERVL 165 656 -4340 858 344 33 6 chr1 116782888 116783249 -165410415 + HERV16 LTR ERVL 798 1168 -3828 666 109 0 0 chr1 116783249 116783350 -165410314 + (CTATA)n Simple_repeat Simple_repeat 2 102 0 303 333 30 10 chr1 116783558 116783657 -165410007 + HERV16 LTR ERVL 1474 1574 -3422 958 263 96 45 chr1 116783824 116784242 -165409422 + LTR16A1 LTR ERVL 9 447 -10 579 331 45 20 chr1 116784635 116784880 -165408784 - MIR SINE MIR -10 252 2 379 320 39 28 chr1 116785532 116785713 -165407951 - MIR SINE MIR -76 186 4 1621 230 60 23 chr1 116786380 116786815 -165406849 - MLT1C LTR MaLR -4 463 13 1046 219 64 25 chr1 116788571 116788963 -165404701 - LTR37A LTR ERV1 0 426 20 373 324 47 27 chr1 116789103 116789251 -165404413 + MIR SINE MIR 4 154 -108 181 274 0 0 chr1 116791066 116791117 -165402547 + L2 LINE L2 3263 3313 0 3036 152 35 61 chr1 116792877 116793503 -165400161 - MER4B LTR ERV1 0 610 1 1880 136 3 23 chr1 116793755 116794057 -165399607 - MER4E LTR ERV1 0 779 484 1279 139 2 27 chr1 116794054 116794292 -165399372 - MER4B LTR ERV1 -404 206 2 * 586 352 102 14 chr1 116794528 116795040 -165398624 + L2 LINE L2 2231 2787 -527 301 289 26 26 chr1 116795055 116795169 -165398495 - MLT1K LTR MaLR -15 573 460 1265 196 90 42 chr1 116795928 116796285 -165397379 - MLT1A2 LTR MaLR 0 374 1 380 328 21 43 chr1 116797075 116797310 -165396354 + MLT1I LTR MaLR 70 299 -110 341 277 102 24 chr1 116797451 116797617 -165396047 + L1ME4a LINE L1 5838 6016 -105 357 289 65 76 chr1 116797623 116797877 -165395787 + MIR SINE MIR 11 261 -1 198 0 0 0 chr1 116798526 116798548 -165395116 + (A)n Simple_repeat Simple_repeat 1 22 0 2132 96 3 0 chr1 116798548 116798850 -165394814 + L1PA13 LINE L1 5861 6163 0 1144 197 46 49 chr1 116799175 116799480 -165394184 - L1ME3A LINE L1 -13 6157 5854 429 285 124 0 chr1 116799622 116799808 -165393856 - MLT1F1 LTR MaLR -326 241 33 360 291 23 0 chr1 116799818 116799904 -165393760 - MER58 DNA MER1_type 0 2420 128 2160 76 0 47 chr1 116800300 116800617 -165393047 - AluY SINE Alu -9 302 1 218 369 24 0 chr1 116800756 116800840 -165392824 - L2 LINE L2 -222 3050 2965 182 354 197 29 chr1 116801252 116801845 -165391819 - L2 LINE L2 -552 2762 2070 46 86 0 0 chr1 116802188 116802304 -165391360 + AT_rich Low_complexity Low_complexity 1 116 0 601 319 61 16 chr1 116802319 116802629 -165391035 + HAL1b LINE L1 256 579 -769 24 85 0 0 chr1 116803120 116803179 -165390485 + AT_rich Low_complexity Low_complexity 1 59 0 44 0 0 0 chr1 116803534 116803578 -165390086 + AT_rich Low_complexity Low_complexity 1 44 0 261 231 139 9 chr1 116803919 116804027 -165389637 - L1M4 LINE L1 -1293 4853 4732 287 269 120 30 chr1 116804416 116804932 -165388732 - L1MEd LINE L1 -4878 1241 808 1300 211 125 25 chr1 116804932 116805292 -165388372 + MSTD LTR MaLR 1 396 0 287 269 120 30 chr1 116805292 116805342 -165388322 - L1MEd LINE L1 -5311 808 764 292 250 0 17 chr1 116805371 116805431 -165388233 - L1MEd LINE L1 -5470 649 591 365 337 29 58 chr1 116805706 116805949 -165387715 - L1MEd LINE L1 -5880 239 4 26 64 0 0 chr1 116806317 116806364 -165387300 + AT_rich Low_complexity Low_complexity 1 47 0 1948 145 7 3 chr1 116806445 116806780 -165386884 + AluSx SINE Alu 1 312 0 2943 145 34 19 chr1 116807120 116807657 -165386007 - L1MC1 LINE L1 -43 6290 5746 1034 154 58 50 chr1 116807658 116807917 -165385747 + THE1C LTR MaLR 1 261 -114 1790 105 70 18 chr1 116807917 116808202 -165385462 + THE1B LTR MaLR 1 300 -64 606 292 82 30 chr1 116808335 116808739 -165384925 + L1ME3A LINE L1 4497 4921 -1225 507 283 66 59 chr1 116808738 116809228 -165384436 + L1ME3A LINE L1 5644 6162 -8 * 1568 181 47 36 chr1 116809326 116809685 -165383979 - MLT1A2 LTR MaLR -11 363 1 354 194 23 70 chr1 116809705 116809834 -165383830 + L1MC5 LINE L1 7609 7731 -230 2182 117 3 0 chr1 116810136 116810436 -165383228 - AluSx SINE Alu -11 301 1 23 33 0 0 chr1 116810474 116810504 -165383160 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 116810761 116810784 -165382880 + AT_rich Low_complexity Low_complexity 1 23 0 209 291 0 0 chr1 116810853 116810908 -165382756 - MIR3 SINE MIR -24 184 130 356 266 57 28 chr1 116811646 116811823 -165381841 + L1MC5 LINE L1 7744 7925 -36 6169 87 32 0 chr1 116812364 116813855 -165379809 + L1PA7 LINE L1 4639 6151 -3 250 255 69 29 chr1 116813951 116814053 -165379611 + L1ME4a LINE L1 6013 6118 -3 2440 56 0 28 chr1 116814478 116814798 -165378866 - AluY SINE Alu 0 311 1 694 328 113 14 chr1 116814803 116815157 -165378507 + L2 LINE L2 2423 2811 -503 227 272 12 12 chr1 116815366 116815447 -165378217 + GA-rich Low_complexity Low_complexity 4 84 0 283 339 64 34 chr1 116815691 116815927 -165377737 + MIR SINE MIR 20 262 0 2186 198 46 27 chr1 116816047 116816583 -165377081 - MLT1E3 LTR MaLR 0 624 89 207 100 0 0 chr1 116817471 116817501 -165376163 + (A)n Simple_repeat Simple_repeat 1 30 0 2321 79 3 0 chr1 116817752 116818057 -165375607 - AluY SINE Alu -5 306 1 225 309 48 12 chr1 116818157 116818241 -165375423 + L2 LINE L2 3186 3272 0 374 333 58 0 chr1 116819042 116819216 -165374448 - L2 LINE L2 0 3313 3130 37 23 0 0 chr1 116821193 116821237 -165372427 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 116821766 116821795 -165371869 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 116822757 116822781 -165370883 + AT_rich Low_complexity Low_complexity 1 24 0 200 106 15 45 chr1 116822956 116823022 -165370642 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr1 116823267 116823297 -165370367 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr1 116823317 116823352 -165370312 + AT_rich Low_complexity Low_complexity 1 35 0 36 53 0 0 chr1 116823864 116823921 -165369743 + AT_rich Low_complexity Low_complexity 1 57 0 2206 102 3 16 chr1 116824055 116824368 -165369296 - AluSg SINE Alu -1 309 1 2452 125 62 0 chr1 116824848 116825249 -165368415 + MSTA LTR MaLR 3 428 0 483 210 196 44 chr1 116826087 116826358 -165367306 + LTR50 LTR ERVL 484 795 0 225 93 56 0 chr1 116826500 116826519 -165367145 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 202 29 57 0 chr1 116826519 116826554 -165367110 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 327 314 39 33 chr1 116826570 116826723 -165366941 - L1ME4a LINE L1 -251 5870 5717 182 327 115 0 chr1 116828074 116828126 -165365538 + L2 LINE L2 1850 1907 -1407 234 392 75 4 chr1 116828207 116828462 -165365202 + L2 LINE L2 2044 2316 -998 332 309 146 24 chr1 116829914 116830079 -165363585 - MIR3 SINE MIR -20 188 4 33 43 0 0 chr1 116830160 116830207 -165363457 + AT_rich Low_complexity Low_complexity 1 47 0 341 316 98 46 chr1 116830559 116830733 -165362931 - MIR SINE MIR -70 192 10 185 338 15 0 chr1 116830867 116830935 -165362729 - L2 LINE L2 0 3313 3245 330 98 0 0 chr1 116832920 116832971 -165360693 + (TC)n Simple_repeat Simple_repeat 2 52 0 838 177 7 0 chr1 116833157 116833298 -165360366 - Tigger3(Golem) DNA MER2_type 0 3029 2888 1187 248 15 4 chr1 116833717 116833983 -165359681 + MSTA-int LTR MaLR 582 850 -801 2117 127 8 30 chr1 116833984 116834346 -165359318 - THE1A LTR MaLR -1 354 1 9817 103 20 22 chr1 116834346 116835779 -165357885 - THE1A-int LTR MaLR 0 1580 150 2189 147 17 11 chr1 116835777 116836137 -165357527 + MSTA-int LTR MaLR 1290 1651 0 * 1781 184 96 6 chr1 116836149 116836502 -165357162 + MSTA LTR MaLR 42 426 -2 581 293 67 39 chr1 116836521 116836804 -165356860 + L2 LINE L2 2881 3171 -142 371 298 0 40 chr1 116836816 116836967 -165356697 - MLT1F LTR MaLR -8 534 390 252 224 0 0 chr1 116837322 116837371 -165356293 + MER112 DNA MER1_type 8 56 -204 241 232 9 18 chr1 116837516 116837628 -165356036 + T-rich Low_complexity Low_complexity 3 113 0 205 286 16 16 chr1 116837861 116837924 -165355740 + L2 LINE L2 2800 2862 -452 650 327 98 17 chr1 116838054 116838596 -165355068 + L1MC4a LINE L1 5337 5922 -1886 274 399 26 10 chr1 116839209 116839402 -165354262 - L3 LINE CR1 -981 596 401 1454 87 0 99 chr1 116839726 116839978 -165353686 + MER30 DNA MER1_type 4 230 0 217 333 136 25 chr1 116840196 116840257 -165353407 - L3 LINE CR1 -1213 364 311 300 70 0 0 chr1 116840257 116840300 -165353364 + (CA)n Simple_repeat Simple_repeat 1 43 0 217 333 136 25 chr1 116840300 116840400 -165353264 - L3 LINE CR1 -1266 311 185 524 333 43 24 chr1 116840796 116841051 -165352613 - MIR SINE MIR -1 261 2 198 103 0 0 chr1 116841981 116842010 -165351654 + (T)n Simple_repeat Simple_repeat 1 29 0 223 328 84 8 chr1 116842733 116842852 -165350812 - L3 LINE CR1 -16 1561 1434 188 265 20 0 chr1 116843595 116843644 -165350020 + L2 LINE L2 3262 3311 -2 495 368 45 19 chr1 116843976 116844351 -165349313 + HAL1 LINE L1 5 389 -2118 225 314 93 0 chr1 116844549 116844635 -165349029 + HAL1 LINE L1 631 724 -1783 329 331 57 0 chr1 116844766 116844890 -165348774 + HAL1 LINE L1 755 885 -1622 249 57 0 0 chr1 116844892 116844927 -165348737 + (CA)n Simple_repeat Simple_repeat 1 35 0 366 256 261 20 chr1 116845048 116845251 -165348413 + HAL1 LINE L1 1167 1418 -1089 27 29 0 0 chr1 116845600 116845634 -165348030 + AT_rich Low_complexity Low_complexity 1 34 0 5198 252 30 24 chr1 116845810 116847580 -165346084 - L1M4 LINE L1 -805 5341 3562 1570 124 0 0 chr1 116847609 116847826 -165345838 - AluSq SINE Alu -96 217 1 3092 262 71 12 chr1 116847877 116848895 -165344769 - L1MC4a LINE L1 -57 7751 6674 222 116 0 0 chr1 116849068 116849111 -165344553 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2018 143 3 6 chr1 116849111 116849439 -165344225 - L1PB3 LINE L1 -11 6143 5817 10732 31 1 0 chr1 116850123 116852185 -165341479 + L1PA4 LINE L1 4089 6155 0 282 29 0 0 chr1 116852211 116852246 -165341418 + (TG)n Simple_repeat Simple_repeat 1 35 0 339 348 43 11 chr1 116854775 116854959 -165338705 - MER117 DNA MER1_type 0 197 8 958 162 21 42 chr1 116855218 116855409 -165338255 + MLT1B LTR MaLR 3 189 -201 332 337 86 18 chr1 116855737 116855900 -165337764 + L2 LINE L2 3140 3313 0 32 95 0 0 chr1 116856545 116856640 -165337024 + AT_rich Low_complexity Low_complexity 1 95 0 653 245 212 0 chr1 116856716 116856961 -165336703 - L1MD3 LINE L1 -8 7987 7691 207 0 0 0 chr1 116857224 116857247 -165336417 + (T)n Simple_repeat Simple_repeat 1 23 0 205 255 78 0 chr1 116857388 116857439 -165336225 + L2 LINE L2 3107 3161 -111 319 308 0 0 chr1 116857525 116857616 -165336048 - L1MC4 LINE L1 -1340 6702 6612 * 357 372 8 0 chr1 116857536 116857657 -165336007 + L1MC4 LINE L1 6614 6735 -1307 318 303 0 78 chr1 116858210 116858352 -165335312 + L2 LINE L2 3183 3313 0 1839 148 3 20 chr1 116859012 116859316 -165334348 + AluJo SINE Alu 11 309 -3 24 0 0 0 chr1 116859398 116859422 -165334242 + AT_rich Low_complexity Low_complexity 1 24 0 5783 175 18 4 chr1 116859869 116860996 -165332668 - L1MC2 LINE L1 -8 6336 5195 26 30 0 0 chr1 116861136 116861169 -165332495 + AT_rich Low_complexity Low_complexity 1 33 0 236 200 83 33 chr1 116861572 116861632 -165332032 - LTR67 LTR ERVL -11 546 484 242 213 62 38 chr1 116861968 116862048 -165331616 + MLT1J1 LTR MaLR 363 444 -2 1509 262 77 14 chr1 116862420 116862847 -165330817 - MLT1F LTR MaLR 0 542 89 203 254 0 18 chr1 116865049 116865104 -165328560 + CT-rich Low_complexity Low_complexity 3 56 0 426 85 0 0 chr1 116865104 116865163 -165328501 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 390 291 52 29 chr1 116865248 116865420 -165328244 - MER5B DNA MER1_type -1 177 2 393 257 47 61 chr1 116865574 116865722 -165327942 - L2 LINE L2 -1 3312 3167 21 36 0 0 chr1 116866776 116866804 -165326860 + AT_rich Low_complexity Low_complexity 1 28 0 335 338 48 24 chr1 116867307 116867517 -165326147 - L2 LINE L2 -567 2747 2533 21 0 0 0 chr1 116867703 116867724 -165325940 + AT_rich Low_complexity Low_complexity 1 21 0 277 303 46 28 chr1 116868320 116868429 -165325235 + L1ME LINE L1 24 134 -5936 28 0 0 0 chr1 116869576 116869604 -165324060 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 116869855 116869881 -165323783 + AT_rich Low_complexity Low_complexity 1 26 0 693 184 0 0 chr1 116869887 116870001 -165323663 + FLAM_C SINE Alu 10 123 -20 382 289 126 43 chr1 116870553 116870927 -165322737 - L1M4 LINE L1 -2663 3483 3079 3693 160 22 35 chr1 116871220 116871465 -165322199 + MER50 LTR ERV1 3 250 -484 6196 120 13 19 chr1 116871465 116872439 -165321225 - LTR5 LTR ERVK 0 969 1 3693 160 22 35 chr1 116872439 116872911 -165320753 + MER50 LTR ERV1 250 711 -23 6842 142 17 18 chr1 116872994 116874462 -165319202 + MER50-int LTR ERV1 1 1546 -5659 1698 134 138 7 chr1 116874462 116874760 -165318904 + MER57-int LTR ERV1 1145 1481 -3399 3166 152 2 6 chr1 116874760 116875274 -165318390 + MER57-int LTR ERV1 3547 4058 -822 6272 194 36 33 chr1 116875286 116876334 -165317330 + MER57-int LTR ERV1 1051 2105 -5432 1587 175 0 55 chr1 116876334 116876659 -165317005 - AluSq SINE Alu -6 307 1 6272 194 36 33 chr1 116876659 116876938 -165316726 + MER57-int LTR ERV1 2105 2382 -5155 759 120 0 0 chr1 116876940 116877048 -165316616 + MER50 LTR ERV1 604 711 -23 231 358 20 7 chr1 116877146 116877297 -165316367 - L1MEd LINE L1 -4991 1128 976 21 0 0 0 chr1 116877792 116877813 -165315851 + AT_rich Low_complexity Low_complexity 1 21 0 1553 275 48 17 chr1 116878262 116878865 -165314799 - L1MC4 LINE L1 -142 7900 7279 1901 206 14 62 chr1 116878907 116879407 -165314257 - L1MC4 LINE L1 -953 7089 6614 248 254 0 0 chr1 116880357 116880428 -165313236 + L1MC4 LINE L1 6625 6695 -1347 294 143 0 0 chr1 116880435 116880484 -165313180 + (TG)n Simple_repeat Simple_repeat 2 50 0 1554 187 7 17 chr1 116880485 116880774 -165312890 - AluJo SINE Alu -26 286 1 350 227 92 42 chr1 116881335 116881454 -165312210 - L2 LINE L2 0 3313 3189 746 226 155 45 chr1 116882293 116882629 -165311035 - L1MB7 LINE L1 -3 6175 5803 1085 212 136 9 chr1 116882752 116883085 -165310579 - L1MB8 LINE L1 -177 6001 5651 2468 68 0 3 chr1 116884043 116884353 -165309311 + AluY SINE Alu 1 309 -2 3015 208 73 0 chr1 116884373 116884965 -165308699 - L1PA15-16 LINE L1 -5242 1607 973 * 4958 148 24 52 chr1 116884964 116886047 -165307617 + L1PA16 LINE L1 5111 6166 0 572 298 19 61 chr1 116886468 116886730 -165306934 + LTR16C LTR ERVL 241 491 0 23 54 0 0 chr1 116886816 116886853 -165306811 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr1 116888244 116888275 -165305389 + AT_rich Low_complexity Low_complexity 1 31 0 33 25 0 0 chr1 116888745 116888785 -165304879 + AT_rich Low_complexity Low_complexity 1 40 0 344 234 90 43 chr1 116888822 116889078 -165304586 - L1M4 LINE L1 -3748 2398 2131 234 233 100 40 chr1 116889797 116889895 -165303769 - HAL1 LINE L1 -922 1585 1473 279 79 0 0 chr1 116889895 116889933 -165303731 + (TA)n Simple_repeat Simple_repeat 2 39 0 234 233 100 40 chr1 116889933 116889984 -165303680 - HAL1 LINE L1 -1033 1474 1427 252 0 0 0 chr1 116890118 116890146 -165303518 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3188 29 0 0 chr1 116890146 116890521 -165303143 - L1PA4 LINE L1 -18 6137 5763 1860 89 92 7 chr1 116891584 116891855 -165301809 - AluSx SINE Alu -16 296 3 1655 142 160 98 chr1 116892817 116892917 -165300747 + L1MA9 LINE L1 5727 5819 -493 1553 176 6 46 chr1 116892917 116893240 -165300424 + AluJb SINE Alu 1 310 -2 1655 142 160 98 chr1 116893240 116893522 -165300142 + L1MA9 LINE L1 5819 6154 -158 2182 120 0 3 chr1 116893522 116893831 -165299833 + AluSx SINE Alu 5 312 0 1655 142 160 98 chr1 116893831 116893977 -165299687 + L1MA9 LINE L1 6154 6289 -23 21 36 0 0 chr1 116893977 116894005 -165299659 + AT_rich Low_complexity Low_complexity 1 28 0 221 332 133 47 chr1 116895024 116895701 -165297963 + L2 LINE L2 1748 2482 -832 817 183 34 53 chr1 116895997 116896205 -165297459 + L1MA2 LINE L1 12 215 -7350 9713 151 44 12 chr1 116896215 116897846 -165295818 + L1MA2 LINE L1 1802 3510 -4055 609 72 0 0 chr1 116897846 116897929 -165295735 + (GAAA)n Simple_repeat Simple_repeat 1 83 0 9713 151 44 12 chr1 116897929 116898251 -165295413 + L1MA2 LINE L1 3510 3820 -3745 1336 208 8 0 chr1 116898260 116898524 -165295140 - L1 LINE L1 -1908 4238 3973 674 258 210 0 chr1 116898531 116898760 -165294904 + L1MA2 LINE L1 3822 4098 -3467 * 2577 200 12 90 chr1 116898755 116899214 -165294450 + L1MA2 LINE L1 4742 5160 -2405 1356 0 0 0 chr1 116899214 116899362 -165294302 + AluY SINE Alu 154 301 -10 2577 200 12 90 chr1 116899362 116899843 -165293821 + L1MA2 LINE L1 5160 5677 -1888 * 6558 123 21 3 chr1 116899835 116901062 -165292602 + L1MA2 LINE L1 6438 7684 -39 336 229 0 0 chr1 116901066 116901149 -165292515 + (CA)n Simple_repeat Simple_repeat 1 83 0 1524 257 20 12 chr1 116901490 116901895 -165291769 - MLT1E2 LTR MaLR -2 624 217 21 0 0 0 chr1 116902395 116902416 -165291248 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 116902840 116902877 -165290787 + AT_rich Low_complexity Low_complexity 1 37 0 503 234 161 0 chr1 116903403 116903595 -165290069 - LTR50 LTR ERVL -9 786 564 204 235 59 0 chr1 116903609 116903660 -165290004 + MIR3 SINE MIR 121 174 -34 691 294 101 31 chr1 116903812 116904197 -165289467 - MLT1J2 LTR MaLR -37 413 2 273 284 59 10 chr1 116904438 116904540 -165289124 + L2 LINE L2 3136 3242 -71 376 233 12 12 chr1 116905358 116905444 -165288220 + MIR3 SINE MIR 118 203 -5 301 330 23 0 chr1 116905487 116905575 -165288089 + MIR SINE MIR 81 170 -92 21 0 0 0 chr1 116905894 116905915 -165287749 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 116907248 116907279 -165286385 + AT_rich Low_complexity Low_complexity 1 31 0 224 218 36 0 chr1 116907312 116907367 -165286297 + L2 LINE L2 2465 2521 -793 311 258 129 65 chr1 116907498 116907653 -165286011 - L2 LINE L2 0 3313 3149 3189 147 117 101 chr1 116907850 116909265 -165284399 + pTR5 LTR ERV1 31 691 -23 237 286 31 0 chr1 116909462 116909560 -165284104 - L1M4 LINE L1 -4160 2799 2699 1907 155 41 36 chr1 116909613 116909975 -165283689 - THE1B LTR MaLR 0 364 1 * 2901 211 6 2 chr1 116909975 116910501 -165283163 + Tigger7 DNA MER2_type 20 547 -1940 566 172 66 16 chr1 116910494 116910616 -165283048 + Tigger7 DNA MER2_type 2459 2586 -1 * 317 263 0 21 chr1 116910621 116910716 -165282948 - L1M4 LINE L1 -4436 2702 2610 22 56 0 0 chr1 116910920 116910956 -165282708 + AT_rich Low_complexity Low_complexity 1 36 0 2448 236 108 20 chr1 116910988 116912096 -165281568 - L1M4 LINE L1 -4550 2409 1213 1751 304 50 46 chr1 116912290 116912562 -165281102 - L1M4 LINE L1 -6029 830 561 3925 77 20 27 chr1 116912562 116912936 -165280728 + MER41A LTR ERV1 2 372 -182 2733 10 0 0 chr1 116912936 116913239 -165280425 + AluY SINE Alu 4 306 -5 3925 77 20 27 chr1 116913239 116913421 -165280243 + MER41A LTR ERV1 372 554 0 1751 304 50 46 chr1 116913421 116913960 -165279704 - L1M4 LINE L1 -6298 561 15 235 294 106 12 chr1 116914151 116914236 -165279428 - L2 LINE L2 0 3272 3180 1083 68 0 0 chr1 116914245 116914377 -165279287 + AluY SINE Alu 1 132 -179 1385 158 32 35 chr1 116915028 116915339 -165278325 + L1MA7 LINE L1 5979 6288 -3 2022 143 0 0 chr1 116915681 116915982 -165277682 + AluSg SINE Alu 1 301 -9 248 205 20 73 chr1 116916193 116916344 -165277320 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 621 112 10 10 chr1 116917165 116917263 -165276401 + MER4A LTR ERV1 1 98 -566 1823 136 6 24 chr1 116917263 116917615 -165276049 + MER4A LTR ERV1 261 664 0 2344 144 3 5 chr1 116917989 116918363 -165275301 + THE1C LTR MaLR 1 373 -2 21 36 0 0 chr1 116918580 116918608 -165275056 + AT_rich Low_complexity Low_complexity 1 28 0 1868 132 0 0 chr1 116919223 116919514 -165274150 + AluSg SINE Alu 17 307 0 21 0 0 0 chr1 116919736 116919757 -165273907 + AT_rich Low_complexity Low_complexity 1 21 0 2916 241 77 28 chr1 116920249 116921026 -165272638 + MER21B LTR ERV1 19 833 -30 1153 258 156 47 chr1 116921518 116922034 -165271630 + MLT1G LTR MaLR 53 590 0 260 327 53 9 chr1 116922105 116922218 -165271446 + MIR3 SINE MIR 50 167 -41 22 35 0 0 chr1 116923786 116923815 -165269849 + AT_rich Low_complexity Low_complexity 1 29 0 215 318 12 47 chr1 116924078 116924163 -165269501 - L2 LINE L2 0 3313 3232 709 265 42 14 chr1 116924226 116924441 -165269223 - MER58A DNA MER1_type 0 224 4 396 389 40 6 chr1 116925048 116925223 -165268441 + MIR3 SINE MIR 10 190 -18 12722 91 5 0 chr1 116926161 116927874 -165265790 - L1P LINE L1 -4423 1723 3 27 62 0 0 chr1 116927922 116927970 -165265694 + AT_rich Low_complexity Low_complexity 1 48 0 207 0 0 0 chr1 116928642 116928665 -165264999 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 294 156 38 54 chr1 116929409 116929512 -165264152 - MLT1G1 LTR MaLR 0 578 365 207 389 52 16 chr1 116932135 116932328 -165261336 - L2 LINE L2 -505 2809 2610 270 235 82 41 chr1 116932338 116932436 -165261228 + MLT1I LTR MaLR 17 118 -291 341 189 49 43 chr1 116932542 116932647 -165261017 + MLT1I LTR MaLR 311 405 -4 1676 173 132 26 chr1 116932668 116933055 -165260609 + MSTA LTR MaLR 1 428 0 314 355 0 53 chr1 116933449 116933618 -165260046 + MER5A DNA MER1_type 28 187 -2 199 390 0 9 chr1 116934167 116934272 -165259392 + MIR3 SINE MIR 97 200 -8 21 0 0 0 chr1 116934902 116934923 -165258741 + AT_rich Low_complexity Low_complexity 1 21 0 1593 172 13 10 chr1 116935461 116935763 -165257901 - Tigger1 DNA MER2_type 0 2418 2116 195 94 31 0 chr1 116936227 116936259 -165257405 + L2 LINE L2 3277 3309 -4 391 274 132 38 chr1 116936487 116936699 -165256965 + LTR40a LTR ERVL 5 236 -283 1237 251 39 41 chr1 116936796 116937183 -165256481 - MLT1B LTR MaLR -2 388 3 845 267 12 56 chr1 116937188 116937439 -165256225 + LTR40a LTR ERVL 244 483 -36 1405 139 214 14 chr1 116937441 116937736 -165255928 - Tigger2 DNA MER2_type 0 2718 2365 1443 158 27 46 chr1 116938248 116938342 -165255322 + L1ME1 LINE L1 5691 5785 -381 2442 75 0 3 chr1 116938342 116938649 -165255015 + AluY SINE Alu 2 307 -4 1443 158 27 46 chr1 116938649 116938918 -165254746 + L1ME1 LINE L1 5785 6089 -77 482 182 0 64 chr1 116938953 116939063 -165254601 + L1MB8 LINE L1 5878 5980 -198 977 205 46 35 chr1 116939222 116939505 -165254159 - L1ME1 LINE L1 -6 6160 5875 7530 35 0 0 chr1 116939550 116940526 -165253138 - L1PA4 LINE L1 0 6155 5180 2255 105 6 0 chr1 116940526 116940851 -165252813 - pTR5 LTR ERV1 -2046 392 66 282 255 32 21 chr1 116940851 116940945 -165252719 - LTR30 LTR ERV1 -80 642 548 5560 161 43 37 chr1 116941048 116942165 -165251499 - pTR5 LTR ERV1 -571 1867 744 21217 54 0 8 chr1 116942165 116944926 -165248738 - L1P LINE L1 -962 5184 2446 24 0 0 0 chr1 116945883 116945907 -165247757 + AT_rich Low_complexity Low_complexity 1 24 0 2062 137 0 3 chr1 116945945 116946238 -165247426 + AluSq SINE Alu 1 292 -21 2149 136 36 28 chr1 116946315 116946675 -165246989 + THE1B LTR MaLR 2 364 0 248 302 16 0 chr1 116947154 116947217 -165246447 - L2 LINE L2 -42 3271 3208 3215 303 65 25 chr1 116947794 116949081 -165244583 + L2 LINE L2 1724 3062 -251 279 298 84 37 chr1 116949093 116949284 -165244380 - L2 LINE L2 -1238 2076 1877 186 103 0 0 chr1 116949428 116949457 -165244207 + (T)n Simple_repeat Simple_repeat 1 29 0 1606 169 0 72 chr1 116949818 116949995 -165243669 - AluJo SINE Alu -5 307 164 180 0 0 0 chr1 116949995 116950015 -165243649 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1606 169 0 72 chr1 116950015 116950168 -165243496 - AluJo SINE Alu -148 164 1 304 257 0 14 chr1 116950903 116950977 -165242687 + 7SK RNA RNA 8 80 -113 2118 182 13 27 chr1 116952047 116952498 -165241166 - MER65A LTR ERV1 0 445 1 2241 123 0 0 chr1 116952999 116953307 -165240357 - AluSg SINE Alu -2 308 1 1005 59 0 0 chr1 116953393 116953511 -165240153 + AluY SINE Alu 1 118 -193 2737 217 54 53 chr1 116953511 116954303 -165239361 + L1MB7 LINE L1 395 1187 -5355 1669 161 9 59 chr1 116954303 116954625 -165239039 - AluSx SINE Alu -6 306 1 617 276 33 36 chr1 116954625 116954929 -165238735 + L1MB7 LINE L1 1717 2019 -4627 437 304 51 9 chr1 116955027 116955363 -165238301 + L1MB7 LINE L1 2265 2614 -4032 1084 269 93 50 chr1 116955386 116955828 -165237836 + MLT1C LTR MaLR 7 467 0 3239 274 37 42 chr1 116955828 116957472 -165236192 + L1MB7 LINE L1 2623 4258 -2386 2141 207 45 105 chr1 116957474 116958214 -165235450 - LTR8A LTR ERV1 0 727 33 597 245 0 13 chr1 116958225 116958380 -165235284 + L1MB7 LINE L1 4271 4423 -2221 3793 119 0 2 chr1 116958521 116959074 -165234590 - MER41A LTR ERV1 0 554 3 774 275 34 21 chr1 116959749 116959985 -165233679 - MER57A-int LTR ERV1 -7283 254 16 573 298 98 8 chr1 116960012 116960247 -165233417 - MER57A LTR ERV1 -12 391 136 447 194 14 7 chr1 116960303 116960447 -165233217 + (TA)n Simple_repeat Simple_repeat 2 146 0 3351 215 53 32 chr1 116960571 116961409 -165232255 + L1MB7 LINE L1 5610 6467 -215 2052 164 6 8 chr1 116961409 116961775 -165231889 - MER47A DNA MER2_type 0 366 2 3351 215 53 32 chr1 116961775 116961977 -165231687 + L1MB7 LINE L1 6467 6663 -19 31 0 0 0 chr1 116962321 116962352 -165231312 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr1 116962483 116962508 -165231156 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr1 116962570 116962598 -165231066 + AT_rich Low_complexity Low_complexity 1 28 0 613 317 28 36 chr1 116962739 116962988 -165230676 - MIR SINE MIR -2 260 14 441 143 9 54 chr1 116962997 116963108 -165230556 - MER96B DNA MER1_type? -240 177 72 1287 149 5 14 chr1 116963108 116963330 -165230334 - THE1C LTR MaLR 0 375 156 1248 95 11 48 chr1 116963330 116963519 -165230145 + AluSq SINE Alu 71 252 -61 847 110 0 0 chr1 116963521 116963639 -165230025 - THE1C LTR MaLR -257 118 1 924 122 40 131 chr1 116964144 116964336 -165229328 - AluJb SINE Alu -8 304 133 2129 114 3 16 chr1 116964336 116964643 -165229021 - AluSc SINE Alu -5 304 2 924 122 40 131 chr1 116964643 116964672 -165228992 - AluJb SINE Alu -179 133 103 2203 105 3 0 chr1 116965569 116965874 -165227790 + AluSc SINE Alu 1 306 -3 285 333 0 0 chr1 116966044 116966155 -165227509 - MER94 DNA DNA 0 134 24 11674 148 32 6 chr1 116966387 116968368 -165225296 - Tigger1 DNA MER2_type -385 2033 1 1871 172 3 0 chr1 116968878 116969186 -165224478 - AluSx SINE Alu -3 309 1 266 323 0 0 chr1 116969356 116969421 -165224243 - L2 LINE L2 -8 3305 3241 1359 260 92 55 chr1 116970355 116970917 -165222747 - MLT1E LTR MaLR -3 590 8 660 232 120 78 chr1 116970923 116971207 -165222457 - MLT1E-int LTR MaLR 0 1371 1076 775 356 36 14 chr1 116971380 116971740 -165221924 - HERV16 LTR ERVL -3456 1540 1173 367 311 71 50 chr1 116971764 116972144 -165221520 - HERV16 LTR ERVL -4464 532 145 2417 87 0 6 chr1 116972482 116972793 -165220871 + AluY SINE Alu 1 309 -2 306 73 0 0 chr1 116972930 116972971 -165220693 + (CA)n Simple_repeat Simple_repeat 2 42 0 1355 280 59 35 chr1 116973147 116973722 -165219942 - MLT1E LTR MaLR -4 589 1 240 249 70 35 chr1 116973812 116973916 -165219748 + MIR SINE MIR 49 154 -66 191 302 113 38 chr1 116974408 116974514 -165219150 + MIR3 SINE MIR 72 185 -23 23 0 0 0 chr1 116974833 116974856 -165218808 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 116974975 116974997 -165218667 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 116975948 116975970 -165217694 + AT_rich Low_complexity Low_complexity 1 22 0 208 321 9 89 chr1 116976131 116976243 -165217421 - L2 LINE L2 -492 2822 2720 291 357 55 20 chr1 116976402 116976601 -165217063 - L2 LINE L2 -892 2422 2217 358 337 155 47 chr1 116976927 116977334 -165216330 - L2 LINE L2 -1 3312 2862 245 282 69 8 chr1 116977557 116977688 -165215976 - LTR43 LTR ERV1 -290 312 174 190 331 53 80 chr1 116978045 116978347 -165215317 - L2 LINE L2 -1426 1888 1595 821 198 12 6 chr1 116978347 116978514 -165215150 + FRAM SINE Alu 1 168 -8 380 276 71 29 chr1 116978594 116978804 -165214860 - L2 LINE L2 -82 3231 3013 2689 143 9 2 chr1 116979108 116979555 -165214109 + L1PB3 LINE L1 5703 6152 -2 231 149 21 0 chr1 116979721 116979768 -165213896 + A-rich Low_complexity Low_complexity 2 49 0 200 139 0 23 chr1 116980620 116980663 -165213001 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr1 116980861 116980884 -165212780 + AT_rich Low_complexity Low_complexity 1 23 0 2512 62 0 0 chr1 116981096 116981401 -165212263 - AluY SINE Alu -6 305 1 849 328 115 22 chr1 116981703 116982081 -165211583 + L2 LINE L2 2449 2869 -445 480 31 0 16 chr1 116982081 116982145 -165211519 - L1PA5 LINE L1 -6 6148 6086 849 328 115 22 chr1 116982145 116982174 -165211490 + L2 LINE L2 2869 2894 -420 477 175 246 9 chr1 116982176 116982290 -165211374 - MER20 DNA MER1_type -63 156 16 21 0 0 0 chr1 116982617 116982638 -165211026 + AT_rich Low_complexity Low_complexity 1 21 0 741 306 76 49 chr1 116982748 116983196 -165210468 - MLT1H LTR MaLR -48 501 42 565 274 70 16 chr1 116984598 116984784 -165208880 - MIR SINE MIR -2 260 65 1499 223 73 41 chr1 116985234 116985767 -165207897 - MLT1F1 LTR MaLR -1 566 1 286 269 36 94 chr1 116986017 116986325 -165207339 + HERV16 LTR ERVL 3346 3635 -1361 21 0 0 0 chr1 116986964 116986985 -165206679 + AT_rich Low_complexity Low_complexity 1 21 0 1776 144 4 0 chr1 116987743 116988014 -165205650 - AluSx SINE Alu -12 300 29 236 333 0 0 chr1 116988151 116988220 -165205444 + (CA)n Simple_repeat Simple_repeat 2 70 0 23 0 0 0 chr1 116989012 116989035 -165204629 + AT_rich Low_complexity Low_complexity 1 23 0 2276 70 14 0 chr1 116989589 116989875 -165203789 - AluY SINE Alu -9 302 13 564 270 49 75 chr1 116990104 116990371 -165203293 + MIR SINE MIR 3 262 0 1335 175 88 37 chr1 116990481 116990778 -165202886 - AluJb SINE Alu 0 312 1 1101 253 70 25 chr1 116990877 116991277 -165202387 - LTR52 LTR ERVL -3 418 1 210 227 21 28 chr1 116991454 116991595 -165202069 + CT-rich Low_complexity Low_complexity 2 141 0 21 36 0 0 chr1 116991828 116991856 -165201808 + AT_rich Low_complexity Low_complexity 1 28 0 189 121 0 0 chr1 116992224 116992257 -165201407 + (CAGAGA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr1 116992293 116992315 -165201349 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 116992371 116992396 -165201268 + AT_rich Low_complexity Low_complexity 1 25 0 618 314 0 29 chr1 116993131 116993370 -165200294 - LTR16A LTR ERVL -201 249 18 819 196 0 115 chr1 116993803 116994038 -165199626 - MLT1A1 LTR MaLR -2 363 156 662 161 0 8 chr1 116994044 116994168 -165199496 - AluSg/x SINE Alu -1 311 189 392 250 0 12 chr1 116994168 116994252 -165199412 - MLT1A1 LTR MaLR -259 106 24 251 189 0 19 chr1 116994254 116994307 -165199357 - MLT1A1 LTR MaLR -313 52 1 * 1239 199 62 146 chr1 116994307 116994819 -165198845 + MER67D LTR ERV1 19 487 -27 1860 301 74 68 chr1 116994819 116994995 -165198669 - L2 LINE L2 -1377 1937 1763 324 0 0 0 chr1 116994995 116995031 -165198633 + (TG)n Simple_repeat Simple_repeat 2 37 0 1860 301 74 68 chr1 116995031 116995714 -165197950 - L2 LINE L2 -1551 1763 1085 1233 141 15 10 chr1 116995714 116995913 -165197751 + L1PA16 LINE L1 5951 6150 -16 1860 301 74 68 chr1 116995913 116996056 -165197608 - L2 LINE L2 -2229 1085 944 2652 180 25 67 chr1 116996056 116996695 -165196969 + LTR9 LTR ERV1 1 612 0 1860 301 74 68 chr1 116996695 116996939 -165196725 - L2 LINE L2 -2370 944 679 1821 184 0 0 chr1 116996939 116997244 -165196420 + AluSx SINE Alu 3 307 -5 1860 301 74 68 chr1 116997244 116997285 -165196379 - L2 LINE L2 -2635 679 640 7724 68 4 4 chr1 116997826 116998833 -165194831 - LTR13 LTR ERVK 0 1007 1 2220 99 0 0 chr1 116999115 116999417 -165194247 + AluY SINE Alu 10 311 0 721 353 91 6 chr1 117000270 117000763 -165192901 + HERVL LTR ERVL 3966 4500 -1154 28 0 0 0 chr1 117001568 117001596 -165192068 + AT_rich Low_complexity Low_complexity 1 28 0 973 284 86 78 chr1 117002569 117003094 -165190570 - MLT1H LTR MaLR -18 531 3 289 291 91 30 chr1 117003137 117003336 -165190328 - L2 LINE L2 -49 3264 3054 263 343 59 35 chr1 117003372 117003626 -165190038 - L2 LINE L2 -401 2913 2654 276 408 11 27 chr1 117003714 117003898 -165189766 - L2 LINE L2 -149 3123 2943 21 0 0 0 chr1 117004211 117004232 -165189432 + AT_rich Low_complexity Low_complexity 1 21 0 223 198 21 28 chr1 117004431 117004574 -165189090 + CT-rich Low_complexity Low_complexity 1 142 0 1247 284 57 42 chr1 117004815 117005154 -165188510 - L1ME3 LINE L1 -225 6006 5674 1540 123 27 114 chr1 117005154 117005488 -165188176 - AluYb8 SINE Alu -13 305 1 1247 284 57 42 chr1 117005488 117005875 -165187789 - L1ME3 LINE L1 -557 5674 5267 688 289 59 62 chr1 117005924 117006270 -165187394 - L1ME3 LINE L1 -5922 474 128 3453 121 24 13 chr1 117006270 117006459 -165187205 + L1PB1 LINE L1 5594 5779 -372 288 0 0 0 chr1 117006459 117006491 -165187173 + (CA)n Simple_repeat Simple_repeat 2 33 0 3453 121 24 13 chr1 117006491 117006847 -165186817 + L1PB1 LINE L1 5779 6145 -6 5980 98 7 25 chr1 117006865 117008071 -165185593 - L1PA8 LINE L1 -6 6166 4967 335 237 40 0 chr1 117008082 117008158 -165185506 - L1MD3 LINE L1 -705 7290 7212 2186 97 0 0 chr1 117008174 117008464 -165185200 - AluY SINE Alu -21 290 1 466 196 52 10 chr1 117008549 117008646 -165185018 - L1ME3 LINE L1 -6262 134 34 273 29 0 0 chr1 117008672 117008706 -165184958 + (CA)n Simple_repeat Simple_repeat 1 34 0 26 30 0 0 chr1 117009785 117009818 -165183846 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr1 117010117 117010147 -165183517 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 117010834 117010855 -165182809 + AT_rich Low_complexity Low_complexity 1 21 0 501 47 0 0 chr1 117012593 117012657 -165181007 + (CA)n Simple_repeat Simple_repeat 2 65 0 22 80 0 0 chr1 117012851 117012901 -165180763 + AT_rich Low_complexity Low_complexity 1 50 0 3349 297 125 54 chr1 117016499 117018999 -165174665 + L2 LINE L2 522 3313 0 243 281 16 0 chr1 117020971 117021035 -165172629 - Zaphod DNA AcHobo -17 4014 3950 524 322 26 64 chr1 117021040 117021307 -165172357 - MER115 DNA AcHobo -123 570 314 391 344 43 12 chr1 117021337 117021500 -165172164 - MER115 DNA AcHobo -468 225 58 209 143 0 41 chr1 117021672 117021721 -165171943 + (TTA)n Simple_repeat Simple_repeat 3 49 0 3374 150 46 0 chr1 117021763 117022369 -165171295 - L1MA4 LINE L1 -11 6289 5656 464 155 0 0 chr1 117022389 117022460 -165171204 + AluSq SINE Alu 133 203 -110 1017 227 23 106 chr1 117022462 117022977 -165170687 + L1M3 LINE L1 5167 5625 -709 1942 121 10 0 chr1 117023061 117023351 -165170313 + AluSx SINE Alu 18 310 -2 2145 122 0 13 chr1 117023699 117024046 -165169618 - AluSx SINE Alu 0 312 3 414 305 29 0 chr1 117024952 117025057 -165168607 + MER5B DNA MER1_type 2 109 -69 381 208 62 39 chr1 117026224 117026354 -165167310 - LTR43 LTR ERV1 -291 311 179 1340 275 120 25 chr1 117026948 117027465 -165166199 - L2 LINE L2 -826 2488 1923 305 284 47 114 chr1 117027859 117028070 -165165594 - MIR SINE MIR -46 216 20 417 338 61 10 chr1 117028256 117028454 -165165210 + MIR SINE MIR 20 227 -35 2609 198 39 97 chr1 117030060 117030822 -165162842 + MER50 LTR ERV1 1 718 -16 320 235 24 12 chr1 117030916 117031001 -165162663 + L1ME LINE L1 929 1014 -5917 207 0 0 0 chr1 117031008 117031031 -165162633 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 377 277 21 50 chr1 117031567 117031899 -165161765 + L1ME LINE L1 1343 1827 -4939 580 268 92 87 chr1 117032045 117032121 -165161543 + L1ME LINE L1 1939 2013 -5109 465 19 0 0 chr1 117032121 117032175 -165161489 + (TA)n Simple_repeat Simple_repeat 1 54 0 580 268 92 87 chr1 117032175 117032211 -165161453 + L1ME LINE L1 2013 2047 -5075 1567 132 0 0 chr1 117032211 117032438 -165161226 + AluSg/x SINE Alu 86 312 0 580 268 92 87 chr1 117032438 117032827 -165160837 + L1ME LINE L1 2047 2433 -4689 180 97 0 0 chr1 117032827 117032858 -165160806 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1728 154 11 4 chr1 117032865 117033145 -165160519 - AluSx SINE Alu -30 282 1 580 268 92 87 chr1 117033145 117033297 -165160367 + L1ME LINE L1 2438 2605 -4517 1115 197 0 18 chr1 117033300 117033523 -165160141 + AluJb SINE Alu 1 219 -93 242 246 0 0 chr1 117033623 117033680 -165159984 + AluSp/q SINE Alu 237 293 -10 21 57 0 0 chr1 117033776 117033811 -165159853 + AT_rich Low_complexity Low_complexity 1 35 0 272 229 26 111 chr1 117033937 117034090 -165159574 + L1ME2 LINE L1 5164 5303 -843 * 1484 270 65 6 chr1 117034082 117034622 -165159042 + L1ME2 LINE L1 5573 6144 -20 23 68 0 0 chr1 117034769 117034813 -165158851 + AT_rich Low_complexity Low_complexity 1 44 0 302 287 0 10 chr1 117035236 117035337 -165158327 + (TA)n Simple_repeat Simple_repeat 1 100 0 364 191 32 0 chr1 117035345 117035408 -165158256 - MER2 DNA MER2_type -11 334 270 17546 195 64 12 chr1 117035409 117036998 -165156666 + L1MA2 LINE L1 19 1524 -6041 375 78 0 0 chr1 117036998 117037049 -165156615 + (CA)n Simple_repeat Simple_repeat 1 51 0 17546 195 64 12 chr1 117037049 117038897 -165154767 + L1MA2 LINE L1 1524 3274 -4291 1530 187 173 14 chr1 117038897 117039266 -165154398 - MSTA LTR MaLR 0 428 1 17546 195 64 12 chr1 117039266 117040813 -165152851 + L1MA2 LINE L1 3274 5267 -2298 5772 170 33 12 chr1 117040814 117042960 -165150704 + L1MA2 LINE L1 5534 7723 0 23 33 0 0 chr1 117042960 117042990 -165150674 + AT_rich Low_complexity Low_complexity 1 30 0 1685 143 19 0 chr1 117042990 117043256 -165150408 - MER2 DNA MER2_type -73 272 2 263 329 114 14 chr1 117044277 117044417 -165149247 - L2 LINE L2 -13 3300 3147 2111 330 85 17 chr1 117045300 117046413 -165147251 - L2 LINE L2 -224 3089 1907 1932 141 0 7 chr1 117046553 117046864 -165146800 + AluSx SINE Alu 1 309 0 25 75 0 0 chr1 117047346 117047399 -165146265 + AT_rich Low_complexity Low_complexity 1 53 0 678 241 9 96 chr1 117049945 117050160 -165143504 - MER20 DNA MER1_type 0 219 24 434 221 77 50 chr1 117050160 117050341 -165143323 - MER53 DNA DNA -3 186 1 22 0 0 0 chr1 117051375 117051397 -165142267 + AT_rich Low_complexity Low_complexity 1 22 0 1348 156 0 9 chr1 117052348 117052572 -165141092 + AluJo SINE Alu 76 297 -15 356 308 91 0 chr1 117053265 117053408 -165140256 - MLT1L LTR MaLR -88 527 372 24 32 0 0 chr1 117053443 117053474 -165140190 + AT_rich Low_complexity Low_complexity 1 31 0 1785 171 0 7 chr1 117053857 117054156 -165139508 + AluJb SINE Alu 1 297 -15 21 36 0 0 chr1 117054253 117054281 -165139383 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr1 117054403 117054432 -165139232 + AT_rich Low_complexity Low_complexity 1 29 0 3420 173 42 4 chr1 117054706 117055982 -165137682 - L1P5 LINE L1 -400 5751 4427 2371 111 3 0 chr1 117055989 117056330 -165137334 + L1PB1 LINE L1 5810 6151 0 446 213 11 0 chr1 117056399 117056493 -165137171 + FRAM SINE Alu 6 100 -76 465 214 0 0 chr1 117056493 117056596 -165137068 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 223 309 118 18 chr1 117056747 117056857 -165136807 - L2 LINE L2 -15 3257 3137 712 226 8 0 chr1 117057134 117057267 -165136397 - MER8 DNA MER2_type -1 238 105 28 0 0 0 chr1 117057860 117057888 -165135776 + AT_rich Low_complexity Low_complexity 1 28 0 2648 147 7 7 chr1 117061041 117061457 -165132207 - MSTA LTR MaLR 0 428 13 274 248 81 34 chr1 117061866 117062015 -165131649 + MER103 DNA DNA 11 166 0 238 265 12 12 chr1 117062498 117062581 -165131083 - L1ME LINE L1 -298 5866 5784 27 49 0 0 chr1 117063112 117063153 -165130511 + AT_rich Low_complexity Low_complexity 1 41 0 502 244 22 109 chr1 117063162 117063392 -165130272 - MER20 DNA MER1_type -4 215 6 433 154 0 39 chr1 117063470 117063548 -165130116 - MSTA LTR MaLR -341 87 13 311 247 73 33 chr1 117063957 117064107 -165129557 + MER103 DNA DNA 11 166 0 731 322 68 21 chr1 117064185 117064511 -165129153 - L2 LINE L2 -444 2870 2530 423 307 124 30 chr1 117064525 117064789 -165128875 - L1MEc LINE L1 -4263 1998 1760 1896 154 7 0 chr1 117064789 117065088 -165128576 - AluSx SINE Alu -9 303 3 423 307 124 30 chr1 117065088 117065622 -165128042 - L1MEc LINE L1 -4501 1760 1125 440 281 152 51 chr1 117065627 117066022 -165127642 - L1MEc LINE L1 -4987 1083 649 843 201 7 8 chr1 117066513 117066717 -165126947 - L1MA4 LINE L1 -215 6085 5888 342 0 0 0 chr1 117066717 117066755 -165126909 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 38406 87 4 11 chr1 117066755 117071384 -165122280 - L1PA6 LINE L1 -13 6141 1562 2333 80 0 6 chr1 117071384 117071696 -165121968 - AluY SINE Alu -1 310 1 38406 87 4 11 chr1 117071696 117073247 -165120417 - L1PA6 LINE L1 -4592 1562 2 3112 186 40 19 chr1 117073248 117073832 -165119832 - L1MA4 LINE L1 -409 5891 5288 215 61 30 0 chr1 117073832 117073865 -165119799 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 3112 186 40 19 chr1 117073865 117074205 -165119459 - L1MA4 LINE L1 -1012 5288 4957 866 215 29 16 chr1 117074191 117074433 -165119231 + L1MA4 LINE L1 6056 6300 0 * 581 294 30 5 chr1 117074816 117075013 -165118651 - L2 LINE L2 -749 2565 2364 3269 113 2 2 chr1 117075103 117075606 -165118058 - L1PA7 LINE L1 -1278 4868 4366 6516 83 9 0 chr1 117075602 117076865 -165116799 + L1PA7 LINE L1 4869 6138 -16 3921 81 11 0 chr1 117075988 117076907 -165116757 + L1PA7 LINE L1 5254 6178 0 928 260 113 97 chr1 117076911 117077512 -165116152 - L2 LINE L2 -1117 2197 1587 24 53 0 0 chr1 117077572 117077610 -165116054 + AT_rich Low_complexity Low_complexity 1 38 0 203 307 109 44 chr1 117077610 117077747 -165115917 - MIR SINE MIR -105 157 12 2767 330 65 24 chr1 117077759 117079167 -165114497 + L2 LINE L2 638 2103 -1211 307 290 30 0 chr1 117080772 117080872 -165112792 + MIR SINE MIR 96 198 -64 180 0 0 0 chr1 117080953 117080973 -165112691 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1457 88 98 0 chr1 117080973 117081188 -165112476 - AluSc SINE Alu -33 276 41 808 231 44 20 chr1 117081929 117082132 -165111532 - MER63A DNA MER1_type -1 209 2 216 67 0 0 chr1 117082284 117082314 -165111350 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 301 286 18 45 chr1 117083521 117083633 -165110031 - L2 LINE L2 -2 3270 3162 312 230 75 98 chr1 117083700 117083874 -165109790 - MER69A DNA AcHobo -7 170 1 1918 135 44 127 chr1 117083930 117084403 -165109261 + Tigger2a DNA MER2_type 1 434 0 23 68 0 0 chr1 117084419 117084463 -165109201 + AT_rich Low_complexity Low_complexity 1 44 0 972 168 23 61 chr1 117084463 117084677 -165108987 - MER2 DNA MER2_type -139 206 1 225 333 56 93 chr1 117084733 117084949 -165108715 - L2 LINE L2 -219 3053 2846 1610 172 0 4 chr1 117085073 117085334 -165108330 + AluJo SINE Alu 4 263 -49 723 145 0 16 chr1 117085419 117085543 -165108121 - AluSg/x SINE Alu -15 297 176 317 190 57 22 chr1 117085546 117085637 -165108027 - AluSq SINE Alu -116 187 121 213 39 0 0 chr1 117085677 117085703 -165107961 + (TG)n Simple_repeat Simple_repeat 1 26 0 223 182 0 0 chr1 117086071 117086115 -165107549 + T-rich Low_complexity Low_complexity 1 44 0 1575 181 0 0 chr1 117086119 117086379 -165107285 - AluJb SINE Alu -52 260 1 242 222 34 24 chr1 117086556 117086660 -165107004 - HsTC2 DNA Tc2 -73 1825 4 313 298 149 46 chr1 117087865 117088194 -165105470 + HAL1b LINE L1 41 403 -945 753 278 71 0 chr1 117088502 117088700 -165104964 + MER58A DNA MER1_type 5 216 -8 2468 138 6 3 chr1 117089444 117089807 -165103857 - THE1B LTR MaLR 0 364 1 22 70 0 0 chr1 117090224 117090267 -165103397 + AT_rich Low_complexity Low_complexity 1 43 0 30 45 0 0 chr1 117090342 117090386 -165103278 + AT_rich Low_complexity Low_complexity 1 44 0 1113 254 85 0 chr1 117091527 117091846 -165101818 + LTR65 LTR ERV1 179 524 -145 21 57 0 0 chr1 117092554 117092589 -165101075 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 117092622 117092644 -165101020 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr1 117094145 117094193 -165099471 + AT_rich Low_complexity Low_complexity 1 48 0 710 304 75 38 chr1 117094325 117094752 -165098912 + L1MA10 LINE L1 2 444 -5697 236 275 92 96 chr1 117094886 117095104 -165098560 + L1MA10 LINE L1 685 901 -5240 8527 226 74 34 chr1 117095299 117095444 -165098220 + L1MA10 LINE L1 822 960 -5438 1682 179 35 0 chr1 117095444 117095729 -165097935 - AluJb SINE Alu -17 295 1 8527 226 74 34 chr1 117095729 117097288 -165096376 + L1MA10 LINE L1 960 2455 -3943 2065 114 10 0 chr1 117097288 117097578 -165096086 + AluSx SINE Alu 1 293 -19 8527 226 74 34 chr1 117097578 117100073 -165093591 + L1MA10 LINE L1 2455 5685 -713 2051 126 3 0 chr1 117100073 117100359 -165093305 + AluY SINE Alu 1 287 -24 8527 226 74 34 chr1 117100359 117101085 -165092579 + L1MA10 LINE L1 5685 6381 -17 245 313 69 7 chr1 117101343 117101487 -165092177 - MIR SINE MIR -22 240 88 180 0 0 0 chr1 117103323 117103343 -165090321 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 199 261 270 18 chr1 117103343 117103446 -165090218 - L2 LINE L2 -31 3241 3107 240 35 0 0 chr1 117104048 117104077 -165089587 + (CA)n Simple_repeat Simple_repeat 2 30 0 231 36 0 0 chr1 117104793 117104821 -165088843 + (TA)n Simple_repeat Simple_repeat 1 28 0 234 125 16 47 chr1 117105856 117105920 -165087744 + CT-rich Low_complexity Low_complexity 3 64 0 190 256 0 0 chr1 117106129 117106172 -165087492 + MIR SINE MIR 3 45 -217 1763 238 53 22 chr1 117106172 117106770 -165086894 + L1MA6 LINE L1 2542 3158 -2988 1259 229 15 15 chr1 117106804 117107141 -165086523 + L1PB2 LINE L1 4073 4409 -1737 27571 45 3 0 chr1 117107146 117111395 -165082269 + L1PA4 LINE L1 1912 6155 0 5357 182 15 16 chr1 117111391 117113134 -165080530 + L1PB2 LINE L1 4409 6151 0 * 581 152 0 10 chr1 117113173 117113272 -165080392 + MER4A LTR ERV1 1 98 -566 1392 184 20 25 chr1 117113272 117113619 -165080045 + MER4A LTR ERV1 261 664 0 564 115 0 0 chr1 117113619 117113706 -165079958 + L1MA5 LINE L1 6206 6292 -8 4532 212 53 4 chr1 117113718 117114813 -165078851 + L1MA6 LINE L1 3179 4327 -1819 1129 192 116 50 chr1 117114813 117115235 -165078429 + LTR7 LTR ERV1 1 450 0 34688 170 48 41 chr1 117115235 117122896 -165070768 + HERVH LTR ERV1 1 7713 0 1109 239 26 54 chr1 117122903 117123330 -165070334 + LTR7 LTR ERV1 36 450 0 3548 200 56 45 chr1 117123330 117124368 -165069296 + L1MA6 LINE L1 4323 5371 -775 1377 235 81 3 chr1 117124376 117124721 -165068943 + L1MA3 LINE L1 19 390 -7175 * 10154 165 29 1 chr1 117124709 117126831 -165066833 + L1MA3 LINE L1 1207 3420 -4145 198 0 0 0 chr1 117126831 117126853 -165066811 + (TAA)n Simple_repeat Simple_repeat 2 23 0 10154 165 29 1 chr1 117126853 117127615 -165066049 + L1MA3 LINE L1 3420 4159 -3406 1823 221 30 40 chr1 117127649 117128218 -165065446 + L1MA3 LINE L1 4434 4996 -2569 985 186 21 0 chr1 117128203 117128397 -165065267 + L1MA3 LINE L1 6181 6378 -1187 * 3010 153 11 7 chr1 117128397 117128932 -165064732 + L1MA3 LINE L1 7172 7724 0 1970 176 24 0 chr1 117128945 117129319 -165064345 + L1MA6 LINE L1 5595 5977 -323 5303 23 0 0 chr1 117129328 117129944 -165063720 - L1PA4 LINE L1 -3 6152 5537 1060 43 129 0 chr1 117129945 117130084 -165063580 + L1P LINE L1 1473 1629 -4517 1836 141 53 0 chr1 117130084 117130403 -165063261 + L1MA6 LINE L1 5965 6300 0 412 256 123 0 chr1 117130425 117130628 -165063036 + MER69 DNA AcHobo 2269 2496 -30 23 0 0 0 chr1 117131436 117131459 -165062205 + AT_rich Low_complexity Low_complexity 1 23 0 604 170 19 0 chr1 117131525 117131631 -165062033 + MLT1C LTR MaLR 1 108 -359 * 11181 181 70 17 chr1 117131627 117132655 -165061009 - Tigger1 DNA MER2_type -18 2400 1428 1719 151 62 49 chr1 117132655 117133025 -165060639 + THE1C LTR MaLR 1 375 0 11181 181 70 17 chr1 117133025 117134216 -165059448 - Tigger1 DNA MER2_type -990 1428 54 2235 77 0 3 chr1 117134216 117134503 -165059161 + AluSc SINE Alu 1 286 -23 11181 181 70 17 chr1 117134503 117134561 -165059103 - Tigger1 DNA MER2_type -2364 54 1 1104 260 77 12 chr1 117134561 117134900 -165058764 + MLT1C LTR MaLR 107 467 0 217 289 13 40 chr1 117134931 117135007 -165058657 - MIR SINE MIR -141 121 48 22 0 0 0 chr1 117135809 117135831 -165057833 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr1 117137290 117137325 -165056339 + AT_rich Low_complexity Low_complexity 1 35 0 342 341 59 15 chr1 117137818 117137953 -165055711 + MIR SINE MIR 14 154 -108 986 228 0 67 chr1 117137963 117138248 -165055416 - AluJo SINE Alu 0 312 47 36 101 0 16 chr1 117138390 117138578 -165055086 + AT_rich Low_complexity Low_complexity 1 185 0 610 295 144 52 chr1 117138602 117139256 -165054408 - HAL1 LINE L1 -210 2297 1584 278 285 69 64 chr1 117139442 117139849 -165053815 - HAL1 LINE L1 -1193 1314 906 29 47 0 0 chr1 117140150 117140193 -165053471 + AT_rich Low_complexity Low_complexity 1 43 0 2556 225 62 57 chr1 117140300 117140910 -165052754 - L1MC3 LINE L1 -933 7270 6654 2014 131 10 0 chr1 117140910 117141208 -165052456 - AluSq SINE Alu -12 301 1 2556 225 62 57 chr1 117141208 117141374 -165052290 - L1MC3 LINE L1 -1549 6654 6490 1757 206 59 29 chr1 117141374 117141782 -165051882 + MSTB1 LTR MaLR 1 420 -12 1069 253 65 6 chr1 117141782 117142122 -165051542 - L1MC3 LINE L1 -1755 6448 6089 3212 120 75 167 chr1 117142124 117143034 -165050630 - LTR12 LTR ERV1 0 826 1 1413 250 33 3 chr1 117143339 117143952 -165049712 - L1MC3 LINE L1 -751 5813 5457 2437 30 0 10 chr1 117143957 117144260 -165049404 - L1PA3 LINE L1 0 6155 5856 3323 264 49 38 chr1 117144261 117145975 -165047689 - L1MC3 LINE L1 -4835 1729 1 352 305 133 42 chr1 117146004 117146365 -165047299 - L1MEc LINE L1 -5218 1178 785 22 56 0 0 chr1 117146883 117146919 -165046745 + AT_rich Low_complexity Low_complexity 1 36 0 2424 131 6 0 chr1 117150367 117150727 -165042937 - THE1B LTR MaLR -2 362 1 2563 73 3 9 chr1 117150727 117151068 -165042596 - THE1B-int LTR MaLR 0 1580 1242 23 33 0 0 chr1 117151089 117151119 -165042545 + AT_rich Low_complexity Low_complexity 1 30 0 191 146 24 0 chr1 117152273 117152314 -165041350 + CT-rich Low_complexity Low_complexity 1 42 0 212 0 0 35 chr1 117152325 117152354 -165041310 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 875 108 0 0 chr1 117152354 117152474 -165041190 - AluSq/x SINE Alu -192 120 1 29 47 0 0 chr1 117152963 117153006 -165040658 + AT_rich Low_complexity Low_complexity 1 43 0 6919 162 21 15 chr1 117153146 117154358 -165039306 - Tigger1 DNA MER2_type -1178 1240 22 231 172 50 30 chr1 117154785 117154884 -165038780 + (TA)n Simple_repeat Simple_repeat 2 102 0 22 35 0 0 chr1 117154944 117154973 -165038691 + AT_rich Low_complexity Low_complexity 1 29 0 227 237 17 0 chr1 117155353 117155412 -165038252 + (TA)n Simple_repeat Simple_repeat 1 60 0 756 217 48 4 chr1 117155412 117155750 -165037914 - MSTD LTR MaLR 0 396 8 21 57 0 0 chr1 117156105 117156140 -165037524 + AT_rich Low_complexity Low_complexity 1 35 0 2269 50 4 0 chr1 117156218 117156497 -165037167 + AluY SINE Alu 30 309 -2 21 36 0 0 chr1 117157536 117157564 -165036100 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 117157589 117157611 -165036053 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 117158015 117158044 -165035620 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr1 117158210 117158257 -165035407 + AT_rich Low_complexity Low_complexity 1 47 0 643 303 122 38 chr1 117158590 117159009 -165034655 - LTR16A1 LTR ERVL 0 457 4 27 73 0 0 chr1 117159299 117159354 -165034310 + AT_rich Low_complexity Low_complexity 1 55 0 1161 254 17 6 chr1 117159966 117160321 -165033343 + L1M4 LINE L1 4441 4799 -1347 435 242 17 0 chr1 117160324 117160444 -165033220 + L1MEc LINE L1 2308 2429 -3967 2003 164 71 28 chr1 117160449 117160966 -165032698 + MLT2A2 LTR ERVL 1 554 0 1925 243 36 23 chr1 117160977 117161871 -165031793 + L1MEc LINE L1 2405 3356 -2859 2197 259 27 26 chr1 117161930 117162736 -165030928 + L1MEc LINE L1 4215 5021 -1194 1990 84 91 3 chr1 117162811 117163096 -165030568 - AluSg SINE Alu 0 310 1 930 186 38 0 chr1 117163096 117163279 -165030385 + L1MC1 LINE L1 5703 5892 -441 * 4471 96 3 3 chr1 117163276 117163930 -165029734 - L1PA8A LINE L1 -789 5357 4704 * 5400 88 21 7 chr1 117163926 117164684 -165028980 + L1PA8A LINE L1 5363 6131 0 1776 196 110 19 chr1 117164690 117165090 -165028574 + L1MC1 LINE L1 5878 6319 -14 2757 7 0 0 chr1 117165090 117165393 -165028271 + AluYa5 SINE Alu 1 303 -8 1776 196 110 19 chr1 117165393 117165410 -165028254 + L1MC1 LINE L1 6319 6333 0 557 177 32 0 chr1 117165404 117165525 -165028139 + L1MB7 LINE L1 5813 5937 -225 * 4119 192 40 10 chr1 117165513 117166728 -165026936 + L1MEc LINE L1 5053 6349 -23 21 0 0 0 chr1 117167131 117167152 -165026512 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 117167561 117167586 -165026078 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr1 117168722 117168766 -165024898 + AT_rich Low_complexity Low_complexity 1 44 0 267 325 36 0 chr1 117169312 117169395 -165024269 - L2 LINE L2 0 3272 3187 24 53 0 0 chr1 117169440 117169478 -165024186 + AT_rich Low_complexity Low_complexity 1 38 0 228 35 0 0 chr1 117169534 117169563 -165024101 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1 117171048 117171069 -165022595 + AT_rich Low_complexity Low_complexity 1 21 0 2526 53 0 0 chr1 117171227 117171528 -165022136 + AluY SINE Alu 2 302 -9 220 106 64 0 chr1 117171646 117171693 -165021971 + (TA)n Simple_repeat Simple_repeat 1 50 0 837 174 38 11 chr1 117172310 117172494 -165021170 + MER33 DNA MER1_type 20 208 -116 642 113 0 0 chr1 117172659 117172774 -165020890 + (TATG)n Simple_repeat Simple_repeat 2 116 0 183 360 70 0 chr1 117172951 117173037 -165020627 - L2 LINE L2 -12 3260 3169 22 80 0 0 chr1 117173642 117173692 -165019972 + AT_rich Low_complexity Low_complexity 1 50 0 1620 188 0 7 chr1 117173695 117173977 -165019687 - AluJb SINE Alu -32 280 1 993 368 55 40 chr1 117174372 117175963 -165017701 - HERVL LTR ERVL -853 4801 3195 1358 234 28 34 chr1 117175973 117176210 -165017454 + L1ME3A LINE L1 5809 6045 -125 2412 90 0 0 chr1 117176210 117176520 -165017144 - AluSp SINE Alu -2 311 2 1358 234 28 34 chr1 117176520 117176637 -165017027 + L1ME3A LINE L1 6045 6161 -9 324 0 0 0 chr1 117176740 117176776 -165016888 + (CA)n Simple_repeat Simple_repeat 1 36 0 2677 291 111 25 chr1 117177029 117177219 -165016445 - L1MEc LINE L1 -4376 2020 1848 2036 64 0 93 chr1 117177219 117177531 -165016133 + AluY SINE Alu 27 309 -2 2677 291 111 25 chr1 117177531 117179077 -165014587 - L1MEc LINE L1 -4548 1848 136 22 35 0 0 chr1 117179316 117179345 -165014319 + AT_rich Low_complexity Low_complexity 1 29 0 1204 247 55 55 chr1 117180614 117181068 -165012596 + MLT2B1 LTR ERVL 1 454 -66 303 28 0 0 chr1 117181069 117181105 -165012559 + (TC)n Simple_repeat Simple_repeat 1 36 0 303 93 0 0 chr1 117181169 117181212 -165012452 + (CA)n Simple_repeat Simple_repeat 2 44 0 4382 24 0 0 chr1 117181397 117181907 -165011757 - L1PA3 LINE L1 -2 6153 5644 236 211 14 0 chr1 117183196 117183267 -165010397 + CT-rich Low_complexity Low_complexity 2 73 0 341 328 31 8 chr1 117183564 117183692 -165009972 + MER5A DNA MER1_type 34 164 -25 227 352 119 48 chr1 117184077 117184429 -165009235 - L2 LINE L2 -33 3280 2904 5275 118 18 20 chr1 117184612 117186092 -165007572 - L1PA14 LINE L1 -3 6158 4668 2017 126 67 17 chr1 117186093 117186450 -165007214 + THE1C LTR MaLR 1 375 0 8853 146 71 15 chr1 117186451 117187946 -165005718 + THE1C-int LTR MaLR 2 1580 0 1791 176 65 6 chr1 117187947 117188300 -165005364 + THE1C LTR MaLR 2 375 0 1380 218 33 0 chr1 117188300 117188635 -165005029 - L1PA14 LINE L1 -1475 4671 4326 2262 109 93 24 chr1 117188645 117189021 -165004643 + MER52C LTR ERV1 877 1278 0 402 117 17 0 chr1 117189021 117189081 -165004583 - L1PA12 LINE L1 -5814 1767 1707 7526 215 18 4 chr1 117189087 117190481 -165003183 - L1PA12 LINE L1 -6164 1417 5 182 203 0 27 chr1 117192189 117192263 -165001401 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 2129 137 30 33 chr1 117192413 117192778 -165000886 + THE1B LTR MaLR 1 364 0 2027 142 0 0 chr1 117192886 117193181 -165000483 + AluSx SINE Alu 1 295 -17 2042 157 0 0 chr1 117193198 117193503 -165000161 + AluSx SINE Alu 1 305 -7 3245 94 9 2 chr1 117194643 117195089 -164998575 - LTR2 LTR ERV1 0 449 1 39483 181 5 9 chr1 117195089 117201899 -164991765 - HERVE LTR ERV1 -1 7812 1035 595 128 39 0 chr1 117201900 117202002 -164991662 - LTR2 LTR ERV1 -183 266 161 2949 190 34 11 chr1 117202002 117202570 -164991094 - HERVE LTR ERV1 -6808 1005 425 2399 180 22 15 chr1 117202600 117203061 -164990603 - HERVE LTR ERV1 -6432 464 1 3215 92 7 5 chr1 117203061 117203509 -164990155 - LTR2 LTR ERV1 0 449 1 189 303 57 41 chr1 117203511 117203633 -164990031 + MIR SINE MIR 128 251 -11 852 218 88 0 chr1 117205465 117205681 -164987983 + MLT2B1 LTR ERVL 1 235 -285 14829 203 27 15 chr1 117205724 117208720 -164984944 + ERVL-B2 LTR ERVL 2479 5567 -197 1071 223 27 5 chr1 117208721 117209022 -164984642 + MLT1A1 LTR MaLR 2 365 0 991 169 37 5 chr1 117209022 117209211 -164984453 + ERVL-B2 LTR ERVL 5563 5757 -7 1503 251 121 9 chr1 117209211 117209665 -164983999 + MLT2B2 LTR ERVL 1 505 -10 387 360 49 55 chr1 117211039 117211573 -164982091 - L2 LINE L2 0 3272 2757 3469 59 0 9 chr1 117212111 117212552 -164981112 - L1PA7 LINE L1 -4 6150 5714 546 356 43 31 chr1 117212764 117213273 -164980391 - HERVL LTR ERVL -1909 3745 3231 1528 193 0 30 chr1 117213536 117213832 -164979832 + AluJo SINE Alu 1 287 -25 1571 218 77 17 chr1 117214568 117214985 -164978679 + L1MD3 LINE L1 7501 7942 -53 547 249 90 5 chr1 117214985 117215186 -164978478 - L1MD2 LINE L1 -8 6351 6134 25 0 0 0 chr1 117215616 117215641 -164978023 + AT_rich Low_complexity Low_complexity 1 25 0 224 338 140 13 chr1 117216201 117216358 -164977306 + MIR SINE MIR 2 178 -84 445 371 65 16 chr1 117217520 117217843 -164975821 + L2 LINE L2 2627 2965 -349 254 426 0 0 chr1 117218008 117218130 -164975534 + L2 LINE L2 3143 3264 -8 227 96 0 77 chr1 117218662 117218714 -164974950 - LTR66 LTR ERVL -169 441 394 * 231 119 0 0 chr1 117218674 117218716 -164974948 + LTR66 LTR ERVL 394 435 -175 21 71 0 0 chr1 117219076 117219118 -164974546 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr1 117219328 117219358 -164974306 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 117221056 117221079 -164972585 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr1 117221162 117221192 -164972472 + AT_rich Low_complexity Low_complexity 1 30 0 2533 55 0 9 chr1 117222142 117222467 -164971197 - L1PA5 LINE L1 -76 6078 5757 573 77 0 0 chr1 117222467 117222544 -164971120 + L1PA5 LINE L1 6077 6154 0 200 183 0 113 chr1 117222550 117222621 -164971043 + A-rich Low_complexity Low_complexity 1 63 0 2369 220 22 2 chr1 117223016 117223479 -164970185 + L1MA4 LINE L1 372 843 -6722 1980 203 34 86 chr1 117223479 117224129 -164969535 + LTR6A LTR ERV1 1 564 0 12576 210 36 16 chr1 117224129 117227620 -164966044 + L1MA4 LINE L1 840 4262 -3457 1464 188 7 46 chr1 117227620 117227924 -164965740 + AluJb SINE Alu 1 292 -20 12576 210 36 16 chr1 117227924 117228307 -164965357 + L1MA4 LINE L1 4262 4636 -3083 2200 121 0 0 chr1 117228307 117228604 -164965060 - AluSq SINE Alu -14 299 3 12576 210 36 16 chr1 117228604 117231332 -164962332 + L1MA4 LINE L1 4636 7699 -20 31 0 0 0 chr1 117231343 117231374 -164962290 + AT_rich Low_complexity Low_complexity 1 31 0 511 330 127 14 chr1 117231486 117231847 -164961817 + L2 LINE L2 2140 2541 -773 371 325 70 58 chr1 117232643 117232972 -164960692 + L1MB2 LINE L1 438 770 -5533 2078 250 157 51 chr1 117233208 117234583 -164959081 + L1MB2 LINE L1 819 2046 -4336 1982 136 0 0 chr1 117234583 117234884 -164958780 + AluSg SINE Alu 1 301 0 2078 250 157 51 chr1 117234884 117236933 -164956731 + L1MB2 LINE L1 2046 4890 -1492 2131 212 36 75 chr1 117236933 117237486 -164956178 - LTR9 LTR ERV1 0 612 86 3364 100 10 0 chr1 117237486 117237967 -164955697 - LTR19A LTR ERV1 0 486 1 2131 212 36 75 chr1 117237967 117238050 -164955614 - LTR9 LTR ERV1 -526 86 1 3334 207 58 21 chr1 117238051 117239446 -164954218 + L1MB2 LINE L1 4888 6374 -33 27 0 0 0 chr1 117239473 117239500 -164954164 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr1 117239717 117239740 -164953924 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 117240095 117240130 -164953534 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 117240203 117240240 -164953424 + AT_rich Low_complexity Low_complexity 1 37 0 1069 206 41 95 chr1 117240445 117240857 -164952807 + MLT1B LTR MaLR 1 390 0 2195 243 27 16 chr1 117241009 117241725 -164951939 + Tigger5 DNA MER2_type 1 782 -1541 725 191 15 0 chr1 117241733 117241864 -164951800 + Tigger5 DNA MER2_type 2187 2319 -4 228 255 32 32 chr1 117241898 117241992 -164951672 - L1MEd LINE L1 -5035 1084 991 2275 97 0 3 chr1 117242287 117242596 -164951068 - AluSc SINE Alu 0 309 2 269 26 26 0 chr1 117242693 117242731 -164950933 + (GA)n Simple_repeat Simple_repeat 2 40 0 270 0 0 0 chr1 117242845 117242875 -164950789 + (GA)n Simple_repeat Simple_repeat 2 31 0 297 0 0 0 chr1 117243117 117243150 -164950514 + (GA)n Simple_repeat Simple_repeat 2 34 0 2059 111 4 0 chr1 117243154 117243464 -164950200 + AluSx SINE Alu 3 313 0 478 225 59 91 chr1 117243651 117244024 -164949640 + L1MEc LINE L1 810 1170 -5226 737 278 82 14 chr1 117244074 117244427 -164949237 + L1MEc LINE L1 1446 1822 -4574 1486 272 134 32 chr1 117244484 117244695 -164948969 + L1MEc LINE L1 1966 2154 -4061 2789 6 0 6 chr1 117244695 117245008 -164948656 + AluYa5 SINE Alu 1 311 0 1486 272 134 32 chr1 117245008 117245026 -164948638 + L1MEc LINE L1 2154 2169 -4046 1521 189 0 27 chr1 117245026 117245322 -164948342 + AluSx SINE Alu 2 289 -23 1486 272 134 32 chr1 117245322 117246526 -164947138 + L1MEc LINE L1 2169 3497 -2718 434 327 47 0 chr1 117246560 117246710 -164946954 + MIR SINE MIR 79 235 -27 2237 158 39 7 chr1 117247038 117247469 -164946195 + L1MA4 LINE L1 5847 6291 -9 1608 172 6 45 chr1 117247794 117248108 -164945556 + AluJb SINE Alu 1 302 -10 30 0 0 0 chr1 117249610 117249640 -164944024 + AT_rich Low_complexity Low_complexity 1 30 0 3769 238 30 63 chr1 117249721 117250745 -164942919 + L1MC3 LINE L1 5843 6900 -885 2489 64 0 10 chr1 117250745 117251059 -164942605 + AluY SINE Alu 1 311 0 3769 238 30 63 chr1 117251059 117251087 -164942577 + L1MC3 LINE L1 6900 6927 -858 3006 141 14 4 chr1 117251087 117251591 -164942073 - MER9 LTR ERVK 0 511 3 3769 238 30 63 chr1 117251591 117251846 -164941818 + L1MC3 LINE L1 6927 7107 -678 242 306 0 0 chr1 117251853 117251925 -164941739 + MLT1F1 LTR MaLR 54 125 -442 342 244 11 0 chr1 117251925 117252015 -164941649 + L1MC3 LINE L1 7189 7279 -506 252 189 0 19 chr1 117252030 117252083 -164941581 + L1MA6 LINE L1 15 66 -5262 * 6965 181 39 42 chr1 117252077 117252750 -164940914 + L1MA6 LINE L1 3872 4546 -1936 423 0 0 0 chr1 117252750 117252797 -164940867 + (TG)n Simple_repeat Simple_repeat 2 48 0 6965 181 39 42 chr1 117252797 117254385 -164939279 + L1MA6 LINE L1 4546 6124 -358 505 117 86 16 chr1 117254386 117254514 -164939150 + L1MA6 LINE L1 6344 6480 -2 22 35 0 0 chr1 117254544 117254573 -164939091 + AT_rich Low_complexity Low_complexity 1 29 0 1522 207 45 93 chr1 117254594 117255137 -164938527 + L1MC3 LINE L1 6143 6326 -18 252 240 229 0 chr1 117255464 117255560 -164938104 - MER5C DNA MER1_type -200 124 7 23 0 0 0 chr1 117257016 117257039 -164936625 + AT_rich Low_complexity Low_complexity 1 23 0 2230 68 0 4 chr1 117257041 117257347 -164936317 + AluY SINE Alu 1 305 0 1226 303 169 25 chr1 117257486 117258249 -164935415 - L2 LINE L2 -844 2470 1598 26 30 0 0 chr1 117258259 117258292 -164935372 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr1 117258503 117258546 -164935118 + AT_rich Low_complexity Low_complexity 1 43 0 300 216 14 14 chr1 117258893 117258967 -164934697 - MIR SINE MIR -5 257 184 339 331 39 8 chr1 117259492 117259622 -164934042 - L2 LINE L2 0 3313 3180 347 297 61 48 chr1 117259941 117260310 -164933354 + L1ME3A LINE L1 5352 5732 -389 27 29 0 0 chr1 117262492 117262526 -164931138 + AT_rich Low_complexity Low_complexity 1 34 0 226 299 81 62 chr1 117263318 117263736 -164929928 + L1MDa LINE L1 1299 1724 -4816 704 89 0 104 chr1 117264088 117264223 -164929441 - L1PB1 LINE L1 -1 6150 6030 244 296 23 23 chr1 117264262 117264350 -164929314 + L1ME3A LINE L1 5989 6076 -94 1590 177 58 13 chr1 117264489 117264867 -164928797 + L1MA4 LINE L1 5900 6294 -6 1266 255 17 73 chr1 117264882 117265345 -164928319 - MLT1D LTR MaLR -67 438 2 24 53 0 0 chr1 117265719 117265757 -164927907 + AT_rich Low_complexity Low_complexity 1 38 0 39 92 0 0 chr1 117265858 117265967 -164927697 + AT_rich Low_complexity Low_complexity 1 109 0 22 70 0 0 chr1 117266876 117266919 -164926745 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr1 117267139 117267163 -164926501 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 117267196 117267222 -164926442 + AT_rich Low_complexity Low_complexity 1 26 0 234 81 0 0 chr1 117268233 117268270 -164925394 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 573 222 118 0 chr1 117268618 117268762 -164924902 + FRAM SINE Alu 6 166 -10 1936 168 6 12 chr1 117269024 117269363 -164924301 - MER1B DNA MER1_type 0 337 1 1894 179 37 38 chr1 117269475 117270025 -164923639 + MLT2A2 LTR ERVL 1 554 0 39 0 0 0 chr1 117270839 117270878 -164922786 + AT_rich Low_complexity Low_complexity 1 39 0 334 152 0 0 chr1 117272176 117272222 -164921442 + Tigger5 DNA MER2_type 2273 2318 -5 336 196 0 0 chr1 117272244 117272300 -164921364 - Tigger5 DNA MER2_type -2235 88 33 382 169 52 13 chr1 117272324 117272401 -164921263 + Tigger5 DNA MER2_type 2243 2322 -1 2048 84 11 18 chr1 117273242 117273579 -164920085 + AluSq SINE Alu 1 335 0 1546 237 175 9 chr1 117275308 117275710 -164917954 + MLT2B2 LTR ERVL 1 483 -32 614 44 44 18 chr1 117275710 117275823 -164917841 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 1546 237 175 9 chr1 117275823 117275859 -164917805 + MLT2B2 LTR ERVL 483 512 -3 543 43 0 0 chr1 117275990 117276060 -164917604 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 323 375 49 25 chr1 117276292 117276537 -164917127 + L2 LINE L2 988 1238 -2076 392 36 0 18 chr1 117276537 117276592 -164917072 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1473 51 0 0 chr1 117276592 117276768 -164916896 - L1PA3 LINE L1 -24 6131 5956 1089 194 68 40 chr1 117277647 117277919 -164915745 + AluJo SINE Alu 28 306 0 579 382 41 12 chr1 117278338 117278664 -164915000 + L2 LINE L2 1996 2346 -968 7265 37 0 1 chr1 117278664 117280164 -164913500 - L1PA3 LINE L1 0 6155 4681 579 382 41 12 chr1 117280164 117280397 -164913267 + L2 LINE L2 2346 2571 -743 211 289 165 25 chr1 117280751 117280872 -164912792 + L2 LINE L2 3160 3297 -16 683 182 82 13 chr1 117280882 117281041 -164912623 + MLT1B LTR MaLR 4 173 -217 644 261 82 39 chr1 117281096 117281353 -164912311 + THE1B LTR MaLR 2 269 -95 401 292 80 15 chr1 117281771 117281908 -164911756 + MIR SINE MIR 74 219 -43 354 23 0 0 chr1 117282467 117282510 -164911154 + (TG)n Simple_repeat Simple_repeat 2 44 0 1008 310 66 26 chr1 117283369 117283791 -164909873 - MER77 LTR ERV1 -13 592 154 256 297 95 27 chr1 117283793 117283941 -164909723 - MER77 LTR ERV1 -407 198 41 6735 118 41 6 chr1 117284308 117284933 -164908731 + L1PA8A LINE L1 4125 4727 -1404 267 54 0 0 chr1 117284933 117284970 -164908694 + (TA)n Simple_repeat Simple_repeat 1 37 0 6735 118 41 6 chr1 117284970 117285897 -164907767 + L1PA8A LINE L1 4727 5738 -393 2437 120 3 28 chr1 117285997 117286389 -164907275 + L1PA8A LINE L1 5748 6129 -2 15208 214 29 38 chr1 117286396 117287441 -164906223 + L1PA14 LINE L1 1189 2242 -3904 1440 238 0 0 chr1 117287441 117287739 -164905925 + AluJb SINE Alu 1 298 -14 15208 214 29 38 chr1 117287739 117290777 -164902887 + L1PA14 LINE L1 2242 5236 -910 2734 122 25 0 chr1 117290780 117291174 -164902490 + MLT2A1 LTR ERVL 1 404 -40 310 118 39 56 chr1 117291183 117291361 -164902303 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 351 64 81 40 chr1 117291355 117291528 -164902136 + (TA)n Simple_repeat Simple_repeat 1 180 0 302 61 82 0 chr1 117291544 117291593 -164902071 + MLT2A1 LTR ERVL 390 442 -2 12094 99 10 5 chr1 117291595 117293857 -164899807 + HERVL-A1-A1 LTR ERVL 2 2350 -3304 23123 87 14 12 chr1 117293857 117296973 -164896691 + HERVL-A1-A1 LTR ERVL 2530 5654 0 2208 148 3 3 chr1 117296974 117297325 -164896339 + MLT2A1 LTR ERVL 2 352 -92 339 177 35 97 chr1 117297489 117297602 -164896062 + L1MC4 LINE L1 6604 6709 -1333 5979 127 2 2 chr1 117297606 117298534 -164895130 + L1PA14 LINE L1 5234 6161 0 28 0 0 0 chr1 117298691 117298719 -164894945 + AT_rich Low_complexity Low_complexity 1 28 0 11645 183 67 3 chr1 117298829 117301087 -164892577 - Tigger1 DNA MER2_type -2 2416 15 27 81 0 0 chr1 117301281 117301343 -164892321 + AT_rich Low_complexity Low_complexity 1 62 0 2085 181 61 20 chr1 117301434 117301843 -164891821 - MSTC LTR MaLR 0 428 3 273 283 120 0 chr1 117301846 117301938 -164891726 + MIR SINE MIR 116 218 -44 38 51 0 0 chr1 117302272 117302331 -164891333 + AT_rich Low_complexity Low_complexity 1 59 0 745 243 27 9 chr1 117302665 117302929 -164890735 + MER57A LTR ERV1 99 401 -2 24 32 0 0 chr1 117303029 117303060 -164890604 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 117303384 117303406 -164890258 + AT_rich Low_complexity Low_complexity 1 22 0 518 207 43 0 chr1 117303656 117303772 -164889892 + L1MA3 LINE L1 16 136 -7429 * 5011 190 11 2 chr1 117303767 117304625 -164889039 + L1MA3 LINE L1 1100 1964 -5601 * 5408 175 42 23 chr1 117304615 117306178 -164887486 + L1MA3 LINE L1 3628 7724 0 22 0 0 0 chr1 117306261 117306283 -164887381 + AT_rich Low_complexity Low_complexity 1 22 0 1430 182 119 68 chr1 117306313 117306802 -164886862 - MER67D LTR ERV1 0 514 1 30 59 0 0 chr1 117307844 117307895 -164885769 + AT_rich Low_complexity Low_complexity 1 51 0 25 31 0 0 chr1 117308335 117308367 -164885297 + AT_rich Low_complexity Low_complexity 1 32 0 459 224 80 67 chr1 117308507 117308670 -164884994 + MER5A DNA MER1_type 2 155 -23 37 39 0 0 chr1 117308670 117308721 -164884943 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr1 117309168 117309201 -164884463 + AT_rich Low_complexity Low_complexity 1 33 0 208 219 0 0 chr1 117311394 117311435 -164882229 + GA-rich Low_complexity Low_complexity 1 41 0 1357 315 29 6 chr1 117311866 117312358 -164881306 + L1MEc LINE L1 260 762 -5845 297 0 0 0 chr1 117312358 117312391 -164881273 + (GA)n Simple_repeat Simple_repeat 2 34 0 494 291 62 27 chr1 117312401 117312889 -164880775 + L1MEc LINE L1 1062 1566 -5041 302 261 0 43 chr1 117312901 117313016 -164880648 + L1MEc LINE L1 1413 1522 -4904 440 268 6 51 chr1 117313066 117313223 -164880441 + L1MEc LINE L1 1878 2027 -4580 26 30 0 0 chr1 117313240 117313273 -164880391 + AT_rich Low_complexity Low_complexity 1 33 0 19588 102 9 9 chr1 117313280 117313487 -164880177 - HERVL LTR ERVL -1479 4175 3969 2325 104 0 3 chr1 117313487 117313794 -164879870 - AluY SINE Alu -5 306 1 19588 102 9 9 chr1 117313794 117316343 -164877321 - HERVL LTR ERVL -1685 3969 1420 1928 216 17 6 chr1 117316444 117316922 -164876742 - L1 LINE L1 -758 5388 4906 23 68 0 0 chr1 117316946 117316990 -164876674 + AT_rich Low_complexity Low_complexity 1 44 0 12188 117 14 7 chr1 117316997 117318843 -164874821 + L1P3 LINE L1 1 1839 -4612 1061 82 0 0 chr1 117318844 117318991 -164874673 + L1P3 LINE L1 3241 3387 -3074 628 164 59 40 chr1 117319118 117319303 -164874361 + AluJb SINE Alu 158 312 0 193 373 60 22 chr1 117319472 117319606 -164874058 + L2 LINE L2 2924 3062 -210 569 226 14 122 chr1 117319870 117320091 -164873573 + L1MDb LINE L1 91 287 -6122 1409 224 0 0 chr1 117320217 117320489 -164873175 + AluJb SINE Alu 9 280 -32 261 0 0 0 chr1 117320489 117320518 -164873146 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 1932 268 59 15 chr1 117320534 117321123 -164872541 + L1MDb LINE L1 506 1120 -5289 1506 165 22 77 chr1 117321124 117321494 -164872170 - MER4A LTR ERV1 0 664 257 495 133 22 22 chr1 117321498 117321588 -164872076 - MER4A LTR ERV1 -574 90 1 985 219 50 95 chr1 117321777 117322238 -164871426 + L1MDb LINE L1 1296 1735 -4671 3264 144 2 13 chr1 117322424 117322979 -164870685 + HERVH LTR ERV1 2437 2985 -4728 * 12265 129 10 25 chr1 117322975 117325017 -164868647 + HERVH LTR ERV1 3140 5149 -2564 578 163 23 23 chr1 117325008 117325137 -164868527 + HERVH LTR ERV1 5590 5718 -1995 * 408 40 0 0 chr1 117325245 117325295 -164868369 + (A)n Simple_repeat Simple_repeat 1 50 0 839 189 144 5 chr1 117325406 117325627 -164868037 - Tigger2 DNA MER2_type -12 2706 2455 1476 185 159 26 chr1 117325627 117325820 -164867844 - MSTA LTR MaLR 0 428 262 2110 130 48 20 chr1 117325820 117326174 -164867490 - THE1B LTR MaLR 0 364 1 10983 110 13 1 chr1 117326174 117327734 -164865930 - THE1B-int LTR MaLR 0 1580 2 1905 152 60 20 chr1 117327735 117328084 -164865580 - THE1B LTR MaLR 0 364 2 1476 185 159 26 chr1 117328084 117328265 -164865399 - MSTA LTR MaLR -165 263 1 347 221 26 0 chr1 117328336 117328413 -164865251 - Tigger2 DNA MER2_type -1974 744 666 24 32 0 0 chr1 117328769 117328800 -164864864 + AT_rich Low_complexity Low_complexity 1 31 0 30 59 0 0 chr1 117329230 117329281 -164864383 + AT_rich Low_complexity Low_complexity 1 51 0 703 204 62 25 chr1 117329699 117329861 -164863803 + AluJb SINE Alu 6 173 -139 10585 93 6 37 chr1 117329964 117331021 -164862643 - HERVL LTR ERVL -4171 1483 487 2194 98 20 0 chr1 117331021 117331318 -164862346 + AluSg SINE Alu 1 303 -7 10585 93 6 37 chr1 117331318 117331786 -164861878 - HERVL LTR ERVL -5167 487 6 299 170 0 0 chr1 117331793 117331846 -164861818 - MSTA LTR MaLR -373 55 3 8699 166 6 43 chr1 117331846 117333470 -164860194 - THE1C-int LTR MaLR -1 1579 13 1330 213 53 53 chr1 117333479 117333678 -164859986 - THE1C LTR MaLR 0 375 174 1214 194 155 0 chr1 117333678 117333936 -164859728 - AluSq SINE Alu -3 300 3 1330 213 53 53 chr1 117333936 117334111 -164859553 - THE1C LTR MaLR -200 175 1 969 152 0 0 chr1 117334111 117334269 -164859395 - L1M1 LINE L1 -612 5688 5531 10137 116 9 6 chr1 117334374 117337356 -164856308 + L1PA7 LINE L1 3101 6150 -4 231 146 0 0 chr1 117337384 117337425 -164856239 + (CA)n Simple_repeat Simple_repeat 2 42 0 253 326 12 0 chr1 117338030 117338116 -164855548 - L2 LINE L2 0 3272 3186 188 267 22 0 chr1 117338305 117338350 -164855314 + L2 LINE L2 3254 3299 -14 191 86 0 29 chr1 117338351 117338386 -164855278 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 387 255 123 0 chr1 117338528 117338634 -164855030 - L1M3c LINE L1 -5840 301 183 883 304 57 10 chr1 117338772 117339250 -164854414 + L1M3c LINE L1 308 901 -5240 1704 180 150 8 chr1 117339265 117339638 -164854026 + MSTA LTR MaLR 1 426 -2 1446 177 14 7 chr1 117339704 117339987 -164853677 + MSTA-int LTR MaLR 1 285 -1366 * 6005 187 42 13 chr1 117339978 117341132 -164852532 + MSTA-int LTR MaLR 429 1580 0 1313 179 95 15 chr1 117341132 117341406 -164852258 + MSTA LTR MaLR 1 296 -132 662 264 72 40 chr1 117341452 117341820 -164851844 + MER39 LTR ERV1 331 565 0 321 235 43 63 chr1 117341937 117342158 -164851506 - L1M4 LINE L1 -4873 1669 1522 20152 100 13 2 chr1 117342874 117346480 -164847184 - L1PA7 LINE L1 -212 6257 2615 933 198 0 6 chr1 117346468 117346625 -164847039 - L1PA7 LINE L1 -6301 160 5 * 6751 236 125 28 chr1 117346612 117349862 -164843802 - L1MA9 LINE L1 -262 7469 3887 235 107 0 133 chr1 117349925 117350000 -164843664 + L1MC4 LINE L1 6638 6702 -1340 230 181 0 14 chr1 117350015 117350087 -164843577 + (TA)n Simple_repeat Simple_repeat 1 71 0 387 60 0 0 chr1 117350115 117350165 -164843499 + (TC)n Simple_repeat Simple_repeat 1 50 0 192 40 0 0 chr1 117350165 117350190 -164843474 + (TA)n Simple_repeat Simple_repeat 1 25 0 362 199 61 23 chr1 117350194 117350325 -164843339 - L1 LINE L1 -2848 3298 3163 344 236 36 0 chr1 117350329 117350439 -164843225 + (TA)n Simple_repeat Simple_repeat 1 114 0 218 213 21 0 chr1 117350438 117350485 -164843179 + GA-rich Low_complexity Low_complexity 2 49 0 * 1958 245 88 48 chr1 117350485 117352322 -164841342 - L1MA9 LINE L1 -3702 3863 2259 490 224 0 0 chr1 117352333 117352431 -164841233 - MSTA LTR MaLR 0 428 331 1778 120 90 37 chr1 117352431 117352810 -164840854 - LTR7 LTR ERV1 0 450 1 3733 101 5 18 chr1 117352810 117353374 -164840290 - HERVH LTR ERV1 0 7713 7157 40016 54 30 3 chr1 117353500 117358731 -164834933 - L1P LINE L1 -772 5374 1 491 329 71 53 chr1 117358733 117359854 -164833810 - L1MEc LINE L1 -5216 1180 39 224 159 0 58 chr1 117360888 117360957 -164832707 + (TA)n Simple_repeat Simple_repeat 1 65 0 1112 129 169 15 chr1 117361084 117361318 -164832346 - AluSg1 SINE Alu 0 311 47 23 78 0 0 chr1 117361318 117361369 -164832295 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 117361568 117361590 -164832074 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr1 117362199 117362243 -164831421 + AT_rich Low_complexity Low_complexity 1 44 0 554 288 82 24 chr1 117362813 117363143 -164830521 - L1MC4 LINE L1 -166 7876 7528 1484 207 3 43 chr1 117363407 117363706 -164829958 - AluJo SINE Alu -23 289 3 248 367 133 23 chr1 117364153 117364789 -164828875 - L2 LINE L2 -36 3277 2567 2014 126 18 0 chr1 117364836 117365122 -164828542 + AluSg SINE Alu 1 291 -19 197 289 237 10 chr1 117365175 117365272 -164828392 - L2 LINE L2 -4 3268 3150 249 200 80 13 chr1 117365856 117365931 -164827733 - LTR67 LTR ERVL -17 540 461 269 292 22 11 chr1 117366360 117366449 -164827215 + MIR SINE MIR 23 112 -150 380 257 33 109 chr1 117366967 117367130 -164826534 + MIR SINE MIR 7 152 -110 1522 195 86 9 chr1 117367130 117367468 -164826196 + MLT1A1 LTR MaLR 1 364 -1 380 257 33 109 chr1 117367468 117367514 -164826150 + MIR SINE MIR 152 200 -62 288 244 52 48 chr1 117367621 117367753 -164825911 - MER5B DNA MER1_type 0 178 60 308 293 86 17 chr1 117368054 117368170 -164825494 + MIR SINE MIR 21 144 -64 11947 167 46 21 chr1 117368468 117370387 -164823277 + Tigger1 DNA MER2_type 60 1930 -488 306 73 0 0 chr1 117370387 117370428 -164823236 + (TG)n Simple_repeat Simple_repeat 2 42 0 11947 167 46 21 chr1 117370428 117370443 -164823221 + Tigger1 DNA MER2_type 1930 1943 -475 2220 112 0 0 chr1 117370443 117370737 -164822927 + AluSg SINE Alu 3 296 -14 11947 167 46 21 chr1 117370737 117371103 -164822561 + Tigger1 DNA MER2_type 1943 2418 0 249 307 143 14 chr1 117371531 117371671 -164821993 - MIR SINE MIR -7 255 98 21 0 0 0 chr1 117373759 117373780 -164819884 + AT_rich Low_complexity Low_complexity 1 21 0 241 314 64 70 chr1 117373840 117374012 -164819652 + MIR SINE MIR 47 217 -45 307 321 134 63 chr1 117374139 117374438 -164819226 - L3 LINE CR1 -21 1556 1237 221 273 45 27 chr1 117374488 117374598 -164819066 + MIR SINE MIR 150 261 -1 357 24 0 0 chr1 117375146 117375188 -164818476 + (TG)n Simple_repeat Simple_repeat 1 42 0 496 244 117 74 chr1 117375238 117375632 -164818032 - HAL1 LINE L1 -992 1515 1105 183 80 0 0 chr1 117375716 117375741 -164817923 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 666 341 26 0 chr1 117375959 117376229 -164817435 - ERVL LTR ERVL -1300 4464 4188 372 289 61 0 chr1 117376269 117376383 -164817281 + LTR33A LTR ERVL 175 295 -228 421 296 25 73 chr1 117377412 117377686 -164815978 - L1ME2 LINE L1 -12 6152 5892 1672 283 104 22 chr1 117377699 117378711 -164814953 - L1ME2 LINE L1 -1103 5043 3949 326 74 0 0 chr1 117378731 117378785 -164814879 - L1MA2 LINE L1 -8 6296 6243 2784 201 124 0 chr1 117378789 117379522 -164814142 - L1MEc LINE L1 -2670 4895 4072 * 9667 194 47 54 chr1 117379517 117381691 -164811973 - L1 LINE L1 -3833 3732 908 383 93 0 0 chr1 117381691 117381745 -164811919 - L1PA6 LINE L1 0 6154 6101 9667 194 47 54 chr1 117381745 117382640 -164811024 - L1 LINE L1 -6657 908 8 240 305 67 37 chr1 117382827 117383003 -164810661 - L1MEc LINE L1 -4216 3350 2878 405 342 97 20 chr1 117383020 117383440 -164810224 - L1MEc LINE L1 -900 3026 2518 7606 24 0 0 chr1 117383441 117384647 -164809017 - L1PA3 LINE L1 0 6155 4948 708 252 85 25 chr1 117384926 117385327 -164808337 + L1MDa LINE L1 2208 2632 -3908 353 292 61 71 chr1 117385460 117386322 -164807342 + L1MEc LINE L1 1578 2392 -3823 211 175 0 25 chr1 117386802 117386842 -164806822 + L2 LINE L2 3261 3299 -14 1444 226 7 11 chr1 117387140 117387427 -164806237 + MER44D DNA MER2_type 2 287 -418 857 152 113 0 chr1 117387453 117387604 -164806060 + MER44D DNA MER2_type 561 600 -5 1978 259 75 15 chr1 117388331 117389015 -164804649 - L1MB8 LINE L1 -2 6176 5452 208 267 100 0 chr1 117389901 117389961 -164803703 - L2 LINE L2 -1 3312 3247 219 333 24 0 chr1 117390019 117390103 -164803561 - L2 LINE L2 -697 2617 2532 351 157 0 0 chr1 117390821 117390891 -164802773 + (TA)n Simple_repeat Simple_repeat 2 71 0 2007 129 0 3 chr1 117391057 117391351 -164802313 - AluSc SINE Alu -16 293 1 27 29 0 0 chr1 117393112 117393146 -164800518 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr1 117393305 117393328 -164800336 + AT_rich Low_complexity Low_complexity 1 23 0 1839 188 65 22 chr1 117394303 117394717 -164798947 - MSTB1 LTR MaLR 0 432 1 1607 281 94 19 chr1 117395258 117396094 -164797570 - L1ME1 LINE L1 -32 6134 5186 297 51 0 0 chr1 117396094 117396133 -164797531 + (CA)n Simple_repeat Simple_repeat 2 40 0 1607 281 94 19 chr1 117396133 117396378 -164797286 - L1ME1 LINE L1 -980 5186 4961 3512 275 68 25 chr1 117396394 117396446 -164797218 - L1ME1 LINE L1 -1251 4895 4847 2102 71 4 0 chr1 117396446 117396715 -164796949 + AluSg SINE Alu 1 270 -40 3512 275 68 25 chr1 117396715 117398307 -164795357 - L1ME1 LINE L1 -1299 4847 3181 1297 201 32 97 chr1 117398703 117399146 -164794518 - MLT2D LTR ERVL 0 414 1 443 354 92 8 chr1 117399515 117399946 -164793718 + L2 LINE L2 2604 3062 -251 2072 94 3 14 chr1 117399975 117400293 -164793371 + AluY SINE Alu 1 315 0 2228 30 51 17 chr1 117401894 117402189 -164791475 - AluY SINE Alu -6 305 1 229 226 0 0 chr1 117402864 117402917 -164790747 - MLT1J2 LTR MaLR -44 406 354 474 280 88 101 chr1 117403138 117403592 -164790072 + LTR67 LTR ERVL 108 555 -2 2242 82 0 58 chr1 117403950 117404280 -164789384 + AluY SINE Alu 1 311 0 35 54 0 0 chr1 117405038 117405094 -164788570 + AT_rich Low_complexity Low_complexity 1 56 0 7768 125 18 35 chr1 117405702 117407020 -164786644 + HERVH LTR ERV1 1061 2356 -5357 309 169 60 12 chr1 117407124 117407207 -164786457 + L1MA9 LINE L1 6225 6311 -1 210 91 0 0 chr1 117407283 117407316 -164786348 + (CA)n Simple_repeat Simple_repeat 2 34 0 249 278 30 8 chr1 117407639 117407772 -164785892 - Zaphod DNA AcHobo -61 3970 3835 980 304 127 16 chr1 117407773 117408223 -164785441 - Zaphod DNA AcHobo -3531 500 1 571 279 39 20 chr1 117408566 117408770 -164784894 + MER63A DNA MER1_type 2 209 -1 2759 13 0 6 chr1 117409305 117409618 -164784046 + AluYa5 SINE Alu 1 311 0 2123 119 0 0 chr1 117410233 117410518 -164783146 + AluSx SINE Alu 1 285 -27 2118 61 0 18 chr1 117410634 117410938 -164782726 + AluY SINE Alu 7 305 0 31 26 0 0 chr1 117411469 117411507 -164782157 + AT_rich Low_complexity Low_complexity 1 38 0 294 330 96 35 chr1 117412693 117412923 -164780741 + MIR SINE MIR 18 261 -1 336 286 20 0 chr1 117413327 117413425 -164780239 - MER97c DNA MER1_type? -920 170 71 31 26 0 0 chr1 117414294 117414332 -164779332 + AT_rich Low_complexity Low_complexity 1 38 0 30 0 0 0 chr1 117414547 117414577 -164779087 + AT_rich Low_complexity Low_complexity 1 30 0 3455 195 16 8 chr1 117414835 117416283 -164777381 + L1MA8 LINE L1 4640 6285 -6 745 106 0 0 chr1 117417313 117417435 -164776229 - L1PA8 LINE L1 -3 6171 6050 22 0 0 0 chr1 117417818 117417840 -164775824 + AT_rich Low_complexity Low_complexity 1 22 0 375 228 12 6 chr1 117418042 117418213 -164775451 + (TA)n Simple_repeat Simple_repeat 2 173 0 21 0 0 0 chr1 117418544 117418565 -164775099 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr1 117418870 117418912 -164774752 + AT_rich Low_complexity Low_complexity 1 42 0 2197 102 3 0 chr1 117420465 117420773 -164772891 - AluSp SINE Alu 0 311 3 21 0 0 0 chr1 117421084 117421105 -164772559 + AT_rich Low_complexity Low_complexity 1 21 0 326 299 82 46 chr1 117421176 117421370 -164772294 - L1M4 LINE L1 -1450 4696 4496 31 48 0 16 chr1 117421607 117421629 -164772035 + AT_rich Low_complexity Low_complexity 1 22 -40 2512 146 32 68 chr1 117421629 117422010 -164771654 - L1PA15 LINE L1 0 6165 5807 2397 48 0 0 chr1 117422010 117422301 -164771363 - AluY SINE Alu -20 291 1 2512 146 32 68 chr1 117422301 117422447 -164771217 - L1PA15 LINE L1 -358 5807 5657 31 48 0 16 chr1 117422447 117422487 -164771177 + AT_rich Low_complexity Low_complexity 22 62 0 310 292 13 127 chr1 117423435 117423671 -164769993 - MIR SINE MIR -6 256 48 282 292 0 56 chr1 117423673 117423762 -164769902 - MIR SINE MIR -176 86 3 2136 143 40 8 chr1 117424027 117424378 -164769286 - THE1B LTR MaLR 0 364 3 1149 216 92 26 chr1 117424559 117424906 -164768758 + MLT1A2 LTR MaLR 1 370 -4 21 0 0 0 chr1 117425286 117425307 -164768357 + AT_rich Low_complexity Low_complexity 1 21 0 252 179 45 0 chr1 117426101 117426168 -164767496 + (TA)n Simple_repeat Simple_repeat 2 71 0 9594 186 20 18 chr1 117426293 117427217 -164766447 + Tigger2 DNA MER2_type 26 946 -1772 2384 50 13 3 chr1 117427217 117427518 -164766146 + AluY SINE Alu 1 304 -7 9594 186 20 18 chr1 117427518 117428516 -164765148 + Tigger2 DNA MER2_type 946 1953 -765 605 94 12 0 chr1 117428526 117428611 -164765053 + L1PA6 LINE L1 12 97 -6049 * 31997 91 18 10 chr1 117428579 117431088 -164762576 + L1PA6 LINE L1 578 3066 -3088 2559 59 0 0 chr1 117431088 117431391 -164762273 + AluY SINE Alu 3 305 -6 31997 91 18 10 chr1 117431391 117434402 -164759262 + L1PA6 LINE L1 3066 6143 -11 4140 148 11 67 chr1 117434432 117435256 -164758408 + Tigger2 DNA MER2_type 1939 2716 -2 28 0 0 0 chr1 117435516 117435544 -164758120 + AT_rich Low_complexity Low_complexity 1 28 0 23 71 0 36 chr1 117435679 117435763 -164757901 + AT_rich Low_complexity Low_complexity 1 81 0 32 43 0 0 chr1 117435803 117435849 -164757815 + AT_rich Low_complexity Low_complexity 1 46 0 186 43 0 0 chr1 117436197 117436220 -164757444 + (TA)n Simple_repeat Simple_repeat 1 23 0 250 245 0 0 chr1 117437244 117437293 -164756371 + L1MB8 LINE L1 12 60 -7505 9611 189 21 36 chr1 117437298 117439619 -164754045 + L1MB8 LINE L1 4539 6823 -799 2156 155 25 0 chr1 117439619 117439974 -164753690 - THE1B LTR MaLR 0 364 1 9611 189 21 36 chr1 117439974 117440031 -164753633 + L1MB8 LINE L1 6823 6879 -743 425 156 89 0 chr1 117440679 117440769 -164752895 + MER4A LTR ERV1 1 98 -566 1503 176 0 42 chr1 117440827 117441133 -164752531 + MER4A LTR ERV1 372 664 0 508 207 40 130 chr1 117441604 117442021 -164751643 - LTR12 LTR ERV1 -262 452 80 21 0 0 0 chr1 117442526 117442547 -164751117 + AT_rich Low_complexity Low_complexity 1 21 0 3329 216 58 8 chr1 117442594 117442843 -164750821 - L1MB1 LINE L1 -101 5891 5656 1021 213 99 28 chr1 117442843 117443125 -164750539 - AluJo SINE Alu 0 302 1 3329 216 58 8 chr1 117443125 117444249 -164749415 - L1MB1 LINE L1 -336 5656 4455 519 218 145 5 chr1 117444249 117444442 -164749222 + L1MB8 LINE L1 7181 7400 -197 * 1959 273 170 23 chr1 117444441 117445347 -164748317 - L1MB1 LINE L1 -4840 1051 13 21 0 0 0 chr1 117445629 117445650 -164748014 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 117445882 117445919 -164747745 + AT_rich Low_complexity Low_complexity 1 37 0 519 297 37 92 chr1 117446552 117446829 -164746835 + L2 LINE L2 1482 1732 -1582 1596 138 0 12 chr1 117446829 117447082 -164746582 - AluSq SINE Alu -9 304 55 519 297 37 92 chr1 117447082 117447208 -164746456 + L2 LINE L2 1732 1863 -1451 212 238 0 0 chr1 117447260 117447302 -164746362 + CT-rich Low_complexity Low_complexity 1 42 0 328 235 49 0 chr1 117447505 117447586 -164746078 - L1MC4 LINE L1 -1341 6701 6617 308 192 39 0 chr1 117447616 117447720 -164745944 + (TA)n Simple_repeat Simple_repeat 1 108 0 251 261 34 68 chr1 117447730 117447818 -164745846 + L2 LINE L2 3229 3313 0 29 60 0 0 chr1 117448214 117448264 -164745400 + AT_rich Low_complexity Low_complexity 1 50 0 2782 148 10 37 chr1 117449156 117449407 -164744257 - HSMAR1 DNA Mariner -713 574 341 2503 62 3 0 chr1 117449407 117449716 -164743948 - AluY SINE Alu 0 311 2 2782 148 10 37 chr1 117449716 117449950 -164743714 - HSMAR1 DNA Mariner -946 341 102 1347 263 145 40 chr1 117450276 117450888 -164742776 - MER52A LTR ERV1 0 1755 553 1066 226 2 157 chr1 117450857 117451517 -164742147 - MER52A LTR ERV1 -406 1349 660 * 26 0 0 0 chr1 117453072 117453098 -164740566 + AT_rich Low_complexity Low_complexity 1 26 0 1033 184 47 47 chr1 117454756 117454990 -164738674 + AluJo SINE Alu 3 236 -76 26 30 0 0 chr1 117455106 117455139 -164738525 + AT_rich Low_complexity Low_complexity 1 33 0 238 194 0 45 chr1 117455305 117455372 -164738292 - L1MC4 LINE L1 -1339 6703 6640 221 164 0 18 chr1 117455406 117455461 -164738203 + (TA)n Simple_repeat Simple_repeat 2 55 0 310 36 36 36 chr1 117455755 117455811 -164737853 + (TTTTTA)n Simple_repeat Simple_repeat 4 59 0 42836 31 21 1 chr1 117455813 117461845 -164731819 - L1HS LINE L1 0 6155 1 476 127 0 0 chr1 117461902 117461973 -164731691 + AluS SINE Alu 4 74 -236 7587 132 19 15 chr1 117462215 117462449 -164731215 + HSMAR1 DNA Mariner 102 334 -953 2190 107 3 0 chr1 117462449 117462758 -164730906 + AluY SINE Alu 2 311 0 7587 132 19 15 chr1 117462758 117463705 -164729959 + HSMAR1 DNA Mariner 334 1287 0 2042 151 46 0 chr1 117464396 117464741 -164728923 - MER46B DNA MER2_type 0 236 1 303 28 0 0 chr1 117467722 117467758 -164725906 + (CA)n Simple_repeat Simple_repeat 2 37 0 185 351 137 0 chr1 117468219 117468350 -164725314 - L2 LINE L2 -891 2423 2275 181 253 177 13 chr1 117470723 117470802 -164722862 - L2 LINE L2 -3035 279 188 234 221 39 71 chr1 117471418 117471545 -164722119 - L1MC4 LINE L1 -741 5421 5296 2440 102 14 32 chr1 117471557 117471928 -164721736 + THE1B LTR MaLR 1 364 0 501 280 64 30 chr1 117471943 117472207 -164721457 - HAL1 LINE L1 -664 1843 1571 329 308 60 27 chr1 117472481 117472666 -164720998 + MLT1L LTR MaLR 425 615 0 1481 95 0 0 chr1 117473049 117473239 -164720425 - AluSc SINE Alu -17 292 103 235 308 122 47 chr1 117474081 117474253 -164719411 - MIR SINE MIR -73 189 5 23 42 0 21 chr1 117475401 117475420 -164718244 + AT_rich Low_complexity Low_complexity 1 19 -28 1896 135 0 34 chr1 117475420 117475717 -164717947 + AluSx SINE Alu 2 288 -24 23 42 0 21 chr1 117475717 117475745 -164717919 + AT_rich Low_complexity Low_complexity 19 47 0 25 75 0 0 chr1 117475974 117476027 -164717637 + AT_rich Low_complexity Low_complexity 1 53 0 1297 278 156 14 chr1 117476326 117476768 -164716896 + MLT1D LTR MaLR 1 505 0 596 324 78 27 chr1 117476918 117477251 -164716413 + HERVL LTR ERVL 38 387 -4609 512 205 17 17 chr1 117477294 117477411 -164716253 - L1 LINE L1 -2529 3617 3501 1642 172 13 83 chr1 117477411 117477764 -164715900 + MLT1A1 LTR MaLR 1 326 -39 2048 123 3 29 chr1 117477764 117478080 -164715584 - AluSq SINE Alu -5 308 1 1642 172 13 83 chr1 117478080 117478110 -164715554 + MLT1A1 LTR MaLR 326 357 -8 2242 225 68 17 chr1 117478124 117478887 -164714777 - L1 LINE L1 -2647 3499 2698 1365 355 21 18 chr1 117479306 117479920 -164713744 + HERVL LTR ERVL 961 1576 -3420 657 317 46 8 chr1 117480052 117480314 -164713350 + HERVL LTR ERVL 1800 2071 -2925 1695 194 5 64 chr1 117480676 117481052 -164712612 + MLT1B LTR MaLR 37 390 0 280 356 101 5 chr1 117481583 117481771 -164711893 + HERVL LTR ERVL 4745 4950 -704 418 90 0 15 chr1 117481798 117481865 -164711799 - MLT2B3 LTR ERVL 0 520 455 367 51 77 13 chr1 117481865 117481943 -164711721 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 2150 234 59 25 chr1 117481943 117482464 -164711200 - MLT2B3 LTR ERVL -19 515 1 673 339 41 32 chr1 117482564 117482909 -164710755 + LTR16A LTR ERVL 103 450 0 2056 114 0 0 chr1 117482958 117483264 -164710400 - AluSg SINE Alu 0 307 2 27 73 0 0 chr1 117484461 117484516 -164709148 + AT_rich Low_complexity Low_complexity 1 55 0 564 71 59 0 chr1 117484622 117484707 -164708957 + L1MA5A LINE L1 6203 6292 -5 212 382 0 0 chr1 117485006 117485074 -164708590 - L2 LINE L2 -12 3260 3193 352 312 48 35 chr1 117485688 117485919 -164707745 - L1M4 LINE L1 -1540 4606 4373 549 260 116 62 chr1 117486169 117486586 -164707078 + MER57B LTR ERV1 4 434 0 25 51 0 0 chr1 117487538 117487577 -164706087 + AT_rich Low_complexity Low_complexity 1 39 0 314 300 27 27 chr1 117487718 117487868 -164705796 - L1MDa LINE L1 -4768 1772 1623 474 215 74 0 chr1 117488117 117488238 -164705426 - L1MC2 LINE L1 -12 6332 6203 433 309 7 50 chr1 117488742 117488813 -164704851 + MLT1G1 LTR MaLR 72 136 -459 1709 164 3 7 chr1 117488813 117489112 -164704552 - AluJb SINE Alu -12 300 3 433 309 7 50 chr1 117489112 117489179 -164704485 + MLT1G1 LTR MaLR 136 204 -391 260 286 9 48 chr1 117489218 117489323 -164704341 + MLT1G1 LTR MaLR 171 271 -284 415 355 65 39 chr1 117489488 117489826 -164703838 + L1M4 LINE L1 529 875 -5667 855 257 17 24 chr1 117489914 117490206 -164703458 + L1MC1 LINE L1 5027 5316 -830 2050 167 6 3 chr1 117490233 117490598 -164703066 - L1PB3 LINE L1 -4 6866 6501 216 172 0 0 chr1 117490607 117490665 -164702999 + (TA)n Simple_repeat Simple_repeat 1 58 0 303 241 35 11 chr1 117490682 117490769 -164702895 + L1MC4 LINE L1 6614 6702 -1340 353 211 14 0 chr1 117490785 117490856 -164702808 - L1PB3 LINE L1 -358 6509 6438 8374 206 26 32 chr1 117490956 117493202 -164700462 - L1PB3 LINE L1 -619 6251 4018 1057 186 119 15 chr1 117493205 117494098 -164699566 - L1PB3 LINE L1 -3996 2866 1674 1095 306 36 29 chr1 117494101 117494689 -164698975 - L1PB3 LINE L1 -6269 594 3 2029 191 37 5 chr1 117494701 117495105 -164698559 + L1MC1 LINE L1 5314 5730 -603 4256 165 32 48 chr1 117495153 117496145 -164697519 - L1PB4 LINE L1 -12 6144 5162 2857 164 18 30 chr1 117496232 117496798 -164696866 + L1MC1 LINE L1 5757 6315 -18 2377 284 114 16 chr1 117496927 117498677 -164694987 + L1ME LINE L1 2575 4545 -1601 868 39 0 0 chr1 117498704 117498808 -164694856 + L1PA7 LINE L1 6046 6149 -5 1303 246 54 33 chr1 117498808 117499340 -164694324 + L1ME LINE L1 4996 5553 -613 1486 270 8 3 chr1 117499340 117499703 -164693961 + MLT1A1 LTR MaLR 1 365 0 1303 246 54 33 chr1 117499703 117499959 -164693705 + L1ME LINE L1 5553 5802 -364 8500 27 1 0 chr1 117500016 117501792 -164691872 - L1PA3 LINE L1 -3 6152 4377 2233 48 0 0 chr1 117501909 117502181 -164691483 - L1PA3 LINE L1 -1803 4343 4072 * 13182 30 0 1 chr1 117502177 117503783 -164689881 + L1PA3 LINE L1 2460 4064 -2082 3937 208 34 18 chr1 117503782 117504854 -164688810 - L1MB1 LINE L1 -25 6143 5057 * 939 282 30 23 chr1 117505268 117505704 -164687960 + MER20B DNA MER1_type 339 777 -6 24 77 0 0 chr1 117506041 117506093 -164687571 + AT_rich Low_complexity Low_complexity 1 52 0 2208 92 10 0 chr1 117506234 117506528 -164687136 + AluSg SINE Alu 1 297 -13 21 57 0 0 chr1 117506862 117506897 -164686767 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 117507536 117507564 -164686100 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr1 117508477 117508520 -164685144 + AT_rich Low_complexity Low_complexity 1 43 0 215 263 13 40 chr1 117508820 117508896 -164684768 + CT-rich Low_complexity Low_complexity 3 76 0 25 65 0 0 chr1 117509269 117509315 -164684349 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr1 117509440 117509466 -164684198 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr1 117509991 117510014 -164683650 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr1 117510413 117510435 -164683229 + AT_rich Low_complexity Low_complexity 1 22 0 6335 196 27 12 chr1 117510826 117513051 -164680613 + L1PB4 LINE L1 3884 6140 -16 25 31 0 0 chr1 117513051 117513083 -164680581 + AT_rich Low_complexity Low_complexity 1 32 0 288 312 78 28 chr1 117513177 117513318 -164680346 + MIR3 SINE MIR 20 167 -41 1939 138 7 3 chr1 117513417 117513722 -164679942 + AluSx SINE Alu 1 306 -6 41 36 0 0 chr1 117513726 117513781 -164679883 + AT_rich Low_complexity Low_complexity 1 55 0 2047 176 42 7 chr1 117513898 117514308 -164679356 - MSTA LTR MaLR 0 428 5 477 179 48 0 chr1 117514383 117514467 -164679197 - MER41A LTR ERV1 -16 538 451 21966 83 5 2 chr1 117514467 117517532 -164676132 + L1P LINE L1 1350 4423 -1723 180 193 53 105 chr1 117518251 117518308 -164675356 - L2 LINE L2 0 3272 3219 1571 171 74 21 chr1 117519485 117519865 -164673799 + L1MA4A LINE L1 5724 6123 -180 348 196 134 0 chr1 117519853 117519950 -164673714 + L1PB4 LINE L1 6044 6153 -3 * 23 54 0 0 chr1 117520326 117520363 -164673301 + AT_rich Low_complexity Low_complexity 1 37 0 408 276 81 67 chr1 117521148 117521507 -164672157 + L1M4 LINE L1 45 408 -6134 5436 225 68 49 chr1 117521562 117523554 -164670110 + L1MB7 LINE L1 3267 5220 -964 2311 77 0 0 chr1 117523554 117523841 -164669823 + AluY SINE Alu 1 287 -24 22 0 0 0 chr1 117523841 117523863 -164669801 + AT_rich Low_complexity Low_complexity 1 22 0 5436 225 68 49 chr1 117523863 117524719 -164668945 + L1MB7 LINE L1 5219 6183 -1 418 345 99 5 chr1 117524766 117524989 -164668675 - MIR SINE MIR 0 262 19 697 137 1 15 chr1 117525401 117525522 -164668142 - LTR12 LTR ERV1 -133 581 302 329 253 10 0 chr1 117525523 117525622 -164668042 - LTR30 LTR ERV1 -79 643 544 1160 127 215 13 chr1 117525626 117525854 -164667810 - LTR12 LTR ERV1 -440 274 1 252 86 0 0 chr1 117525887 117525922 -164667742 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 9886 189 49 65 chr1 117526217 117528320 -164665344 + L1MA8 LINE L1 2380 4516 -1775 1835 160 3 3 chr1 117528320 117528607 -164665057 + AluSx SINE Alu 1 287 -25 216 0 0 0 chr1 117528608 117528632 -164665032 + (CA)n Simple_repeat Simple_repeat 2 25 0 9886 189 49 65 chr1 117528632 117529020 -164664644 + L1MA8 LINE L1 4516 4909 -1382 667 193 0 7 chr1 117529020 117529155 -164664509 + AluJo SINE Alu 1 134 -178 9886 189 49 65 chr1 117529155 117529657 -164664007 + L1MA8 LINE L1 4909 5418 -873 2213 117 0 3 chr1 117529657 117529966 -164663698 - AluSq SINE Alu -5 308 1 9886 189 49 65 chr1 117529966 117530812 -164662852 + L1MA8 LINE L1 5418 6287 -4 235 0 0 54 chr1 117530834 117530871 -164662793 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 306 269 46 62 chr1 117530897 117531027 -164662637 + L1M4 LINE L1 505 632 -5914 1279 271 51 15 chr1 117531214 117531734 -164661930 + L1M4 LINE L1 3148 3733 -2911 1081 251 48 6 chr1 117531721 117532056 -164661608 + L1M4 LINE L1 4116 4464 -2180 * 476 222 0 0 chr1 117532107 117532206 -164661458 - MER2 DNA MER2_type -162 183 85 4117 209 67 13 chr1 117532206 117533850 -164659814 - L1MA4A LINE L1 -23 6982 5253 1051 221 12 36 chr1 117533862 117534115 -164659549 - AluJo SINE Alu -30 282 36 6036 229 35 7 chr1 117534125 117535744 -164657920 - L1MA4A LINE L1 -1593 5255 3593 1809 166 55 6 chr1 117535798 117536124 -164657540 + LTR3b LTR ERVK 159 500 0 629 236 136 16 chr1 117536124 117536366 -164657298 + HERVK3 LTR ERVK 2 272 -6971 1455 204 86 18 chr1 117536511 117536849 -164656815 + HERVK3 LTR ERVK 1321 1681 -5562 * 1580 197 48 0 chr1 117536848 117537143 -164656521 + HERVK3 LTR ERVK 1843 2151 -5092 718 134 76 0 chr1 117537147 117537266 -164656398 - LTR3b LTR ERVK -214 286 159 6900 267 70 43 chr1 117537279 117540390 -164653274 - L1MA4A LINE L1 -3645 3203 9 474 198 0 75 chr1 117540405 117540511 -164653153 - MER2 DNA MER2_type -245 100 3 1609 195 0 13 chr1 117540669 117540972 -164652692 + AluJb SINE Alu 3 301 -11 235 241 0 108 chr1 117541081 117541164 -164652500 - MER2 DNA MER2_type -267 78 5 1350 229 0 13 chr1 117541324 117541638 -164652026 + AluJb SINE Alu 3 312 0 590 228 166 23 chr1 117541655 117541914 -164651750 + L1MB8 LINE L1 5882 6177 -1 604 320 128 57 chr1 117541940 117542748 -164650916 - L2 LINE L2 -1156 2158 1294 245 288 51 51 chr1 117544087 117544205 -164649459 - MER20 DNA MER1_type -101 118 1 241 224 0 15 chr1 117544397 117544464 -164649200 + LTR33A LTR ERVL 441 506 -17 31 0 0 0 chr1 117545137 117545168 -164648496 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 117547104 117547130 -164646534 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 117548487 117548508 -164645156 + AT_rich Low_complexity Low_complexity 1 21 0 1220 251 74 0 chr1 117550205 117550543 -164643121 + MLT1A1 LTR MaLR 1 363 -2 21 0 0 0 chr1 117552144 117552165 -164641499 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 117553451 117553477 -164640187 + AT_rich Low_complexity Low_complexity 1 26 0 852 268 118 50 chr1 117553607 117553852 -164639812 + MLT1F LTR MaLR 68 350 -192 2606 98 3 11 chr1 117553852 117554230 -164639434 - THE1C LTR MaLR 0 375 1 852 268 118 50 chr1 117554230 117554364 -164639300 + MLT1F LTR MaLR 350 473 -69 3124 220 21 28 chr1 117554368 117555117 -164638547 + Tigger6a DNA MER2_type 2 745 -338 243 363 35 29 chr1 117555796 117555967 -164637697 + L2 LINE L2 2224 2395 -919 960 300 73 41 chr1 117556570 117557318 -164636346 - L1MEc LINE L1 -2039 4343 3537 1642 192 0 7 chr1 117557318 117557604 -164636060 - AluJb SINE Alu -26 286 3 960 300 73 41 chr1 117557604 117558110 -164635554 - L1MEc LINE L1 -2845 3537 3049 444 300 164 11 chr1 117558162 117558686 -164634978 - L1MEc LINE L1 -3433 2949 2346 362 367 50 38 chr1 117558693 117559110 -164634554 - L1MEc LINE L1 -4115 2448 2027 313 319 50 34 chr1 117560342 117560580 -164633084 + ERVL LTR ERVL 3805 4046 -1718 1032 197 131 27 chr1 117560614 117560873 -164632791 + AluJb SINE Alu 1 286 -16 21 57 0 0 chr1 117560873 117560908 -164632756 + AT_rich Low_complexity Low_complexity 1 35 0 1565 209 16 73 chr1 117561868 117562360 -164631304 - L1MA9 LINE L1 -39 6273 5810 21 36 0 0 chr1 117562400 117562428 -164631236 + AT_rich Low_complexity Low_complexity 1 28 0 1904 119 0 54 chr1 117562428 117562723 -164630941 - AluSx SINE Alu -33 279 1 3706 220 50 49 chr1 117562925 117563734 -164629930 + MER45B DNA AcHobo 1 813 -768 1620 183 11 14 chr1 117563734 117564019 -164629645 + AluJb SINE Alu 1 284 -28 3706 220 50 49 chr1 117564019 117564232 -164629432 + MER45B DNA AcHobo 813 1024 -16 316 291 18 14 chr1 117567171 117567348 -164626316 - L1MEc LINE L1 -4676 1841 1618 212 171 0 0 chr1 117567994 117568035 -164625629 + T-rich Low_complexity Low_complexity 1 41 0 327 279 50 68 chr1 117568763 117568982 -164624682 - L1MEc LINE L1 -5902 470 256 249 123 247 0 chr1 117570268 117570341 -164623323 + AluSc SINE Alu 203 293 -6 2357 71 13 7 chr1 117571257 117571566 -164622098 + AluY SINE Alu 1 311 0 2102 135 33 61 chr1 117623704 117623933 -164569731 - L1MB2 LINE L1 0 6171 5956 1321 167 106 7 chr1 117623933 117624208 -164569456 - AluJo SINE Alu -10 302 1 2102 135 33 61 chr1 117624208 117624370 -164569294 - L1MB2 LINE L1 -215 5956 5791 1779 149 3 23 chr1 117624556 117624728 -164568936 - AluJb SINE Alu -9 303 129 1449 181 3 24 chr1 117624728 117625026 -164568638 - AluSc SINE Alu -17 292 1 2141 89 0 10 chr1 117625027 117625320 -164568344 - AluY SINE Alu -21 290 1 1779 149 3 23 chr1 117625320 117625453 -164568211 - AluJb SINE Alu -182 130 2 336 309 42 60 chr1 117625556 117625580 -164568084 + L1MD3 LINE L1 7817 7840 -155 779 197 0 0 chr1 117625580 117625707 -164567957 - FLAM_C SINE Alu -2 131 5 336 309 42 60 chr1 117625707 117625850 -164567814 + L1MD3 LINE L1 7840 7981 -14 1967 117 3 3 chr1 117625864 117626170 -164567494 + AluSx SINE Alu 1 306 0 2068 105 0 20 chr1 117626222 117626526 -164567138 + AluSx SINE Alu 1 298 -14 2656 82 57 138 chr1 117626975 117627466 -164566198 + MLT2A2 LTR ERVL 3 453 0 767 111 85 136 chr1 117627968 117628081 -164565583 - Tigger1 DNA MER2_type 0 2418 2318 1765 127 7 33 chr1 117628081 117628380 -164565284 + AluJb SINE Alu 3 293 -19 767 111 85 136 chr1 117628380 117628465 -164565199 - Tigger1 DNA MER2_type -100 2318 2230 536 86 0 0 chr1 117628670 117628740 -164564924 - AluJ/FRAM SINE Alu -25 287 218 2137 101 0 16 chr1 117628851 117629167 -164564497 + AluSx SINE Alu 1 311 -1 2018 110 3 19 chr1 117629898 117630215 -164563449 - AluSx SINE Alu 0 312 1 1711 138 3 72 chr1 117630231 117630418 -164563246 - AluJo SINE Alu -1 311 155 2248 80 0 10 chr1 117630418 117630719 -164562945 - AluSg SINE Alu -12 298 1 1711 138 3 72 chr1 117630719 117630865 -164562799 - AluJo SINE Alu -157 155 1 1954 142 7 3 chr1 117631251 117631561 -164562103 - AluSx SINE Alu -1 311 1 1960 113 23 19 chr1 117632351 117632660 -164561004 - AluSq SINE Alu -3 310 1 279 0 0 0 chr1 117633116 117633147 -164560517 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 1656 139 0 0 chr1 117633148 117633393 -164560271 - AluSx SINE Alu -25 287 43 2444 55 3 7 chr1 117634063 117634373 -164559291 + AluY SINE Alu 1 309 -2 350 135 0 0 chr1 117635019 117635071 -164558593 + Alu SINE Alu 1 52 -248 1530 143 3 98 chr1 117635071 117635399 -164558265 + AluJb SINE Alu 4 300 -12 420 265 199 6 chr1 117635402 117635583 -164558081 + MIR SINE MIR 25 240 -22 1608 182 7 7 chr1 117636259 117636556 -164557108 - AluJo SINE Alu -15 297 1 302 237 40 0 chr1 117636580 117636656 -164557008 + L2 LINE L2 3226 3304 -9 414 249 169 68 chr1 117637112 117637349 -164556315 + MIR SINE MIR 2 262 0 1569 172 28 11 chr1 117637529 117637814 -164555850 - AluJb SINE Alu -22 290 1 754 192 0 8 chr1 117637819 117637949 -164555715 - FLAM_A SINE Alu -4 129 1 1741 168 32 45 chr1 117637963 117637993 -164555671 - L1MB7 LINE L1 -41 6143 6114 2001 123 7 3 chr1 117637993 117638285 -164555379 + AluSc SINE Alu 1 293 -16 1741 168 32 45 chr1 117638285 117638629 -164555035 - L1MB7 LINE L1 -70 6114 5774 4972 82 36 10 chr1 117639931 117640605 -164553059 + LTR8 LTR ERV1 1 691 0 2039 95 20 10 chr1 117641054 117641349 -164552315 + AluSx SINE Alu 1 298 -14 251 309 72 10 chr1 117641980 117642077 -164551587 - L3 LINE CR1 -185 1392 1290 563 106 0 0 chr1 117642098 117642183 -164551481 - AluJ/FRAM SINE Alu 0 312 228 2135 99 0 7 chr1 117642289 117642583 -164551081 + AluSx SINE Alu 1 292 -20 279 300 20 21 chr1 117643052 117643159 -164550505 - MIR SINE MIR -88 120 35 309 241 135 68 chr1 117643586 117643782 -164549882 - MIR SINE MIR -43 219 4 216 67 0 0 chr1 117643828 117643858 -164549806 + (TCCCC)n Simple_repeat Simple_repeat 2 31 0 1386 111 5 0 chr1 117644293 117644482 -164549182 - AluSp SINE Alu -15 298 109 804 113 17 9 chr1 117644559 117644674 -164548990 - AluSq/x SINE Alu -196 117 2 1189 116 11 11 chr1 117646277 117646467 -164547197 - AluSg/x SINE Alu -14 296 107 2043 75 14 17 chr1 117646881 117647174 -164546490 + AluSc SINE Alu 1 292 -17 428 290 124 6 chr1 117650405 117650574 -164543090 - MIR3 SINE MIR 0 208 20 2088 136 0 3 chr1 117650938 117651247 -164542417 - AluSx SINE Alu -2 310 3 1635 167 0 17 chr1 117651284 117651572 -164542092 + AluSx SINE Alu 11 293 -19 1505 143 24 125 chr1 117651578 117651914 -164541750 + AluJb SINE Alu 1 302 0 354 237 0 105 chr1 117651914 117652028 -164541636 - MER45 DNA AcHobo -938 102 1 633 282 6 18 chr1 117652738 117652908 -164540756 + MER5B DNA MER1_type 5 172 -6 295 309 63 17 chr1 117653067 117653242 -164540422 + MLT1L LTR MaLR 91 273 -342 1800 128 0 92 chr1 117653292 117653620 -164540044 - AluSx SINE Alu -9 303 6 1339 157 63 42 chr1 117653625 117653911 -164539753 - AluJb SINE Alu -20 292 1 572 216 99 6 chr1 117654087 117654184 -164539480 - MER5B DNA MER1_type 0 178 91 2140 107 0 3 chr1 117654184 117654482 -164539182 - AluSx SINE Alu -15 297 1 572 216 99 6 chr1 117654482 117654546 -164539118 - MER5B DNA MER1_type -87 91 2 210 278 111 0 chr1 117654611 117654683 -164538981 - L2 LINE L2 -217 3055 2976 2212 102 0 6 chr1 117654867 117655181 -164538483 - AluSq SINE Alu -1 312 1 1947 122 0 48 chr1 117655184 117655496 -164538168 - AluSx SINE Alu -15 297 1 1459 199 0 44 chr1 117655499 117655815 -164537849 - AluJb SINE Alu -10 302 1 290 65 0 22 chr1 117656384 117656430 -164537234 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 217 254 75 15 chr1 117656598 117656665 -164536999 - L2 LINE L2 -2 3270 3200 1053 141 5 26 chr1 117656667 117656859 -164536805 - AluJb SINE Alu -11 301 114 210 347 82 14 chr1 117656972 117657119 -164536545 - L2 LINE L2 -173 3099 2943 3971 88 41 6 chr1 117657159 117657694 -164535970 + MER41A LTR ERV1 1 554 0 211 217 83 0 chr1 117657806 117657866 -164535798 + MIR SINE MIR 198 262 0 2396 52 3 7 chr1 117658593 117658900 -164534764 - AluY SINE Alu -5 306 1 550 147 116 11 chr1 117659258 117659353 -164534311 - AluJb SINE Alu -206 106 2 539 335 117 26 chr1 117659441 117659793 -164533871 - L1ME4a LINE L1 -217 5904 5519 198 360 78 45 chr1 117659932 117660174 -164533490 + L3 LINE CR1 920 1169 -408 290 253 247 25 chr1 117660870 117661028 -164532636 - MIR SINE MIR -50 212 20 199 293 141 10 chr1 117661400 117661499 -164532165 + MIR SINE MIR 34 145 -117 221 225 0 0 chr1 117664527 117664567 -164529097 + polypyrimidine Low_complexity Low_complexity 3 42 0 489 239 267 17 chr1 117669305 117669481 -164524183 + MIR SINE MIR 43 262 0 234 0 0 0 chr1 117669514 117669540 -164524124 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1846 119 0 37 chr1 117669542 117669836 -164523828 - AluSx SINE Alu -29 283 1 2121 92 0 26 chr1 117670367 117670672 -164522992 + AluY SINE Alu 1 297 -14 612 306 160 5 chr1 117671307 117671812 -164521852 + L2 LINE L2 2714 3295 -18 831 181 0 0 chr1 117672440 117672573 -164521091 - FLAM_C SINE Alu 0 133 1 562 218 53 8 chr1 117672671 117672804 -164520860 - FLAM_C SINE Alu -1 142 4 1029 166 23 0 chr1 117673181 117673356 -164520308 - AluSg/x SINE Alu 0 312 134 2195 99 3 10 chr1 117673356 117673670 -164519994 - AluSx SINE Alu 0 312 1 1673 153 56 3 chr1 117673973 117674261 -164519403 + AluJo SINE Alu 1 303 -9 193 326 0 0 chr1 117674678 117674727 -164518937 - MER5A DNA MER1_type -113 76 28 2111 171 24 11 chr1 117675232 117675613 -164518051 - MLT1B LTR MaLR -4 386 1 183 221 279 19 chr1 117676078 117676182 -164517482 - MIR3 SINE MIR -67 141 11 2152 105 0 13 chr1 117678104 117678410 -164515254 + AluSx SINE Alu 1 302 -10 183 277 0 0 chr1 117678750 117678797 -164514867 - MIR SINE MIR -86 122 76 6837 118 13 56 chr1 117680514 117680563 -164513101 + Tigger1 DNA MER2_type 27 77 -2341 2065 127 0 10 chr1 117680563 117680870 -164512794 + AluSx SINE Alu 1 304 -8 6837 118 13 56 chr1 117680870 117681092 -164512572 + Tigger1 DNA MER2_type 77 307 -2111 2017 110 7 13 chr1 117681092 117681392 -164512272 + AluSx SINE Alu 1 298 -14 6837 118 13 56 chr1 117681392 117681574 -164512090 + Tigger1 DNA MER2_type 307 495 -1923 1720 165 9 22 chr1 117681574 117681890 -164511774 + AluJb SINE Alu 1 312 0 6837 118 13 56 chr1 117681890 117682052 -164511612 + Tigger1 DNA MER2_type 495 662 -1756 2132 93 10 3 chr1 117682052 117682341 -164511323 + AluSq SINE Alu 1 291 -22 1530 138 0 4 chr1 117682350 117682581 -164511083 + AluSg/x SINE Alu 71 300 -10 6837 118 13 56 chr1 117682581 117683272 -164510392 + Tigger1 DNA MER2_type 670 1289 -1129 748 172 26 33 chr1 117683278 117683429 -164510235 - AluSg/x SINE Alu -43 269 120 1160 176 69 4 chr1 117683432 117683694 -164509970 + Tigger1 DNA MER2_type 1314 1592 -826 1988 126 20 0 chr1 117683696 117683818 -164509846 + AluSx SINE Alu 1 119 -193 266 71 0 24 chr1 117683818 117683860 -164509804 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1988 126 20 0 chr1 117683860 117684030 -164509634 + AluSx SINE Alu 119 299 -13 678 203 0 8 chr1 117684042 117684170 -164509494 + FLAM_C SINE Alu 1 127 -6 915 220 4 13 chr1 117684181 117684413 -164509251 + AluSx SINE Alu 1 230 -82 443 134 61 0 chr1 117684526 117684608 -164509056 - L1M3 LINE L1 -408 5775 5689 2137 102 0 0 chr1 117684665 117684976 -164508688 - AluSx SINE Alu 0 311 1 266 322 11 0 chr1 117687934 117688021 -164505643 + MIR SINE MIR 58 145 -117 2016 109 0 17 chr1 117688145 117688477 -164505187 - AluSx SINE Alu 0 312 1 1838 123 21 7 chr1 117688479 117688764 -164504900 - AluJo SINE Alu -23 289 1 375 60 0 0 chr1 117690070 117690120 -164503544 + (TG)n Simple_repeat Simple_repeat 2 51 0 546 286 26 39 chr1 117691103 117691337 -164502327 + L2 LINE L2 3042 3272 0 358 217 279 0 chr1 117694841 117694970 -164498694 - MIR3 SINE MIR -7 201 37 2436 57 0 3 chr1 117694981 117695280 -164498384 - AluY SINE Alu -13 298 1 2053 118 3 13 chr1 117695622 117695926 -164497738 - AluSx SINE Alu -11 301 1 2091 82 3 57 chr1 117696029 117696345 -164497319 - AluSp SINE Alu -14 299 1 1263 161 0 40 chr1 117696392 117696616 -164497048 - AluJb SINE Alu -30 282 68 7082 128 123 43 chr1 117696619 117697245 -164496419 - pTR5 LTR ERV1 0 2438 1864 3640 47 2 7 chr1 117697245 117697695 -164495969 + LTR7 LTR ERV1 1 448 -2 7082 128 123 43 chr1 117697695 117698632 -164495032 - pTR5 LTR ERV1 -574 1864 749 455 136 0 0 chr1 117698632 117698698 -164494966 - AluJb SINE Alu -235 77 12 328 304 26 43 chr1 117698751 117698866 -164494798 - MIR3 SINE MIR -90 118 6 350 259 67 44 chr1 117699175 117699310 -164494354 + L1ME LINE L1 5502 5639 -482 2098 115 0 3 chr1 117699388 117699674 -164493990 - AluSx SINE Alu -15 297 13 648 230 148 5 chr1 117699697 117699906 -164493758 + MER58B DNA MER1_type 79 317 -24 242 246 43 72 chr1 117699928 117699961 -164493703 + L1ME LINE L1 5663 5695 -475 1746 161 6 25 chr1 117699961 117700140 -164493524 - AluJb SINE Alu -1 311 139 2276 111 0 0 chr1 117700140 117700446 -164493218 - AluSx SINE Alu -6 306 1 1746 161 6 25 chr1 117700446 117700583 -164493081 - AluJb SINE Alu -173 139 1 242 246 43 72 chr1 117700583 117700687 -164492977 + L1ME LINE L1 5695 5796 -374 205 188 0 0 chr1 117700772 117700804 -164492860 + L2 LINE L2 3242 3273 -40 1607 172 0 18 chr1 117700905 117701190 -164492474 + AluJo SINE Alu 1 280 -32 216 0 0 0 chr1 117701196 117701220 -164492444 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 620 154 56 62 chr1 117701227 117701527 -164492137 + MSTA LTR MaLR 3 403 -25 2064 102 7 7 chr1 117701727 117702021 -164491643 + AluSg SINE Alu 1 294 -16 261 0 0 0 chr1 117702707 117702736 -164490928 + (CA)n Simple_repeat Simple_repeat 1 29 0 2337 94 0 0 chr1 117703611 117703910 -164489754 + AluSq SINE Alu 1 299 -14 476 348 102 12 chr1 117703991 117704324 -164489340 - L2 LINE L2 0 3272 2910 2103 127 0 3 chr1 117704329 117704629 -164489035 + AluSx SINE Alu 1 299 -13 1815 158 30 7 chr1 117704891 117705189 -164488475 + AluJb SINE Alu 1 305 -7 251 53 0 26 chr1 117705206 117705244 -164488420 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 357 368 58 27 chr1 117705253 117705476 -164488188 + L1 LINE L1 3073 3302 -2844 241 226 198 9 chr1 117705484 117705590 -164488074 + MIR3 SINE MIR 65 190 -18 885 137 0 0 chr1 117706152 117706276 -164487388 - FLAM_C SINE Alu -19 124 1 549 203 59 0 chr1 117706747 117706865 -164486799 + MIR3 SINE MIR 72 196 -12 266 333 19 45 chr1 117707348 117707504 -164486160 - L2 LINE L2 -208 3064 2913 1222 111 0 0 chr1 117707728 117707900 -164485764 - AluSq SINE Alu -11 302 131 1900 129 0 7 chr1 117707909 117708195 -164485469 - AluSg SINE Alu -5 305 22 1104 103 0 7 chr1 117708244 117708399 -164485265 - AluSx SINE Alu -156 156 3 2287 98 0 3 chr1 117708400 117708707 -164484957 - AluSx SINE Alu -2 310 5 399 325 115 61 chr1 117708820 117709140 -164484524 - L2 LINE L2 -788 2526 2225 1649 158 30 7 chr1 117709140 117709437 -164484227 + AluJo SINE Alu 1 304 -8 399 325 115 61 chr1 117709437 117709775 -164483889 - L2 LINE L2 -1089 2225 1832 1164 98 0 25 chr1 117709779 117709942 -164483722 + AluSg/x SINE Alu 136 294 -16 330 282 195 0 chr1 117710299 117710448 -164483216 - MIR SINE MIR -65 197 20 190 102 0 41 chr1 117710745 117710794 -164482870 + (CA)n Simple_repeat Simple_repeat 2 48 0 184 338 32 84 chr1 117710955 117711109 -164482555 - L2 LINE L2 -49 3223 3078 206 333 53 61 chr1 117711891 117712005 -164481659 - L2 LINE L2 -24 3248 3136 678 168 0 30 chr1 117712962 117713093 -164480571 + AluJo/FLAM SINE Alu 5 131 -171 2058 87 3 20 chr1 117713093 117713391 -164480273 - AluSq SINE Alu -20 293 1 1914 124 28 7 chr1 117713391 117713682 -164479982 - AluSx SINE Alu -15 297 1 183 80 0 0 chr1 117715210 117715235 -164478429 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2127 108 7 0 chr1 117715290 117715585 -164478079 + AluSx SINE Alu 1 297 -15 228 289 22 33 chr1 117715836 117715926 -164477738 + L2 LINE L2 3003 3091 -181 184 178 44 22 chr1 117716103 117716148 -164477516 + L2 LINE L2 1158 1203 -2111 2433 66 3 0 chr1 117716408 117716709 -164476955 - AluSq SINE Alu -11 302 1 292 288 8 80 chr1 117716711 117716836 -164476828 + MIR SINE MIR 92 207 -55 2398 86 0 3 chr1 117717404 117717717 -164475947 - AluSx SINE Alu 0 312 1 1894 148 0 23 chr1 117718532 117718842 -164474822 + AluJb SINE Alu 1 303 -9 1673 128 0 61 chr1 117718862 117719158 -164474506 + AluSx SINE Alu 18 295 -17 296 128 234 32 chr1 117722763 117722857 -164470807 + MIR SINE MIR 120 232 -30 6364 33 0 0 chr1 117922906 117923663 -164270001 - L1PA2 LINE L1 -100 6055 5299 5691 31 3 0 chr1 117923661 117924345 -164269319 + L1P LINE L1 4427 5112 -1034 * 1663 62 5 0 chr1 117924492 117924716 -164268948 + L1P LINE L1 5028 5252 -894 945 167 4 0 chr1 117924716 117925147 -164268517 - ALR/Alpha Satellite centromeric 0 432 1 306 303 84 8 chr1 117925259 117925378 -164268286 - MIR3 SINE MIR -15 193 66 1166 238 74 40 chr1 117925877 117926297 -164267367 - L1MD2 LINE L1 -18 6341 5908 22 35 0 0 chr1 117926847 117926876 -164266788 + AT_rich Low_complexity Low_complexity 1 29 0 36560 63 30 2 chr1 117927441 117932260 -164261404 - L1P LINE L1 -1193 4953 1 1259 132 2 1 chr1 117932273 117934512 -164259152 + ALR/Alpha Satellite centromeric 1 2241 -5 1100 125 2 0 chr1 117934568 117934921 -164258743 + ALR/Alpha Satellite centromeric 1 353 -69 27991 59 39 2 chr1 117935023 117938736 -164254928 - L1P LINE L1 -2298 3848 1 1316 154 5 1 chr1 117938742 117947612 -164246052 - ALR/Alpha Satellite centromeric 0 8906 1 8525 57 1 0 chr1 117947612 117948688 -164244976 - L1P LINE L1 -1142 5004 3928 192 40 0 0 chr1 117948699 117948724 -164244940 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 9228 38 0 0 chr1 117948724 117950595 -164243069 - L1PA3 LINE L1 -24 6131 4261 2616 137 24 7 chr1 117950695 117951111 -164242553 - THE1B-int LTR MaLR -1157 423 1 2393 138 6 3 chr1 117951111 117951474 -164242190 - THE1B LTR MaLR 0 364 1 238 229 48 0 chr1 117951998 117952081 -164241583 - L1MC4 LINE L1 -1341 6701 6615 439 171 91 0 chr1 117952121 117952209 -164241455 - MER34 LTR ERV1 -2 540 445 359 285 17 64 chr1 117952214 117952386 -164241278 - L1ME3 LINE L1 -324 5838 5675 651 266 106 5 chr1 117952457 117952645 -164241019 - MER58A DNA MER1_type -17 207 1 290 284 11 0 chr1 117952671 117952766 -164240898 - L1ME3 LINE L1 -566 5604 5509 939 194 143 11 chr1 117952768 117953088 -164240576 + MSTD LTR MaLR 1 396 0 385 285 99 33 chr1 117953088 117953330 -164240334 - L1ME3 LINE L1 -651 5511 5254 380 71 143 0 chr1 117953661 117953731 -164239933 - MADE1 DNA Mariner 0 80 1 367 260 27 20 chr1 117953960 117954106 -164239558 - L1ME3 LINE L1 -1538 4608 4462 1643 175 23 9 chr1 117954107 117954455 -164239209 - L1MB2 LINE L1 -5 6166 5814 435 71 0 0 chr1 117954455 117954511 -164239153 - Alu SINE Alu -22 288 233 21 0 0 0 chr1 117954876 117954897 -164238767 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 117955627 117955657 -164238007 + AT_rich Low_complexity Low_complexity 1 30 0 43 76 0 0 chr1 117956605 117956697 -164236967 + AT_rich Low_complexity Low_complexity 1 92 0 2672 159 22 22 chr1 117957370 117957880 -164235784 - LTR10A LTR ERV1 -99 510 1 2314 236 12 32 chr1 117957966 117958563 -164235101 - LTR10A-int LTR ERV1 0 6649 6065 508 304 108 35 chr1 117958781 117959206 -164234458 + L1ME4a LINE L1 5509 5964 -157 24 0 0 0 chr1 117959288 117959312 -164234352 + AT_rich Low_complexity Low_complexity 1 24 0 370 213 49 89 chr1 117960349 117960406 -164233258 + L1M4b LINE L1 1444 1502 -5357 1538 196 33 7 chr1 117960406 117960707 -164232957 + AluSx SINE Alu 1 309 -3 370 213 49 89 chr1 117960707 117960874 -164232790 + L1M4b LINE L1 1502 1659 -5200 975 232 91 19 chr1 117960883 117961266 -164232398 - L1M4 LINE L1 -4832 1710 1324 359 156 33 0 chr1 117961285 117961407 -164232257 + (TA)n Simple_repeat Simple_repeat 1 126 0 1109 112 39 0 chr1 117961423 117961601 -164232063 - L1PA13 LINE L1 0 6163 5979 21 0 0 0 chr1 117961761 117961782 -164231882 + AT_rich Low_complexity Low_complexity 1 21 0 5202 88 16 0 chr1 117962491 117962561 -164231103 - L1P3 LINE L1 -4751 1710 1643 219 36 0 0 chr1 117962561 117962589 -164231075 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 5202 88 16 0 chr1 117962589 117963249 -164230415 - L1P3 LINE L1 -4818 1643 968 14585 105 7 2 chr1 117963259 117965419 -164228245 + L1PA7 LINE L1 1402 3572 -2574 9653 75 27 8 chr1 117965403 117967526 -164226138 + L1PA7 LINE L1 3990 6148 -6 * 25 0 0 0 chr1 117967527 117967552 -164226112 + AT_rich Low_complexity Low_complexity 1 25 0 212 143 26 52 chr1 117968055 117968132 -164225532 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr1 117968654 117968675 -164224989 + AT_rich Low_complexity Low_complexity 1 21 0 2233 227 73 46 chr1 117968913 117969583 -164224081 - MER76 LTR ERV 0 688 1 659 180 15 126 chr1 117969614 117969657 -164224007 - L1MA7 LINE L1 -195 6096 6050 1573 168 7 28 chr1 117969657 117969942 -164223722 + AluJo SINE Alu 1 279 -33 207 0 0 0 chr1 117969951 117969974 -164223690 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 659 180 15 126 chr1 117969974 117970126 -164223538 - L1MA7 LINE L1 -249 6042 5914 895 129 58 0 chr1 117970128 117970299 -164223365 + L1MA7 LINE L1 6110 6290 -1 24 53 0 0 chr1 117970708 117970746 -164222918 + AT_rich Low_complexity Low_complexity 1 38 0 198 311 0 0 chr1 117971363 117971424 -164222240 + MIR SINE MIR 111 171 -91 2261 75 0 33 chr1 117971824 117972131 -164221533 - AluY SINE Alu -14 297 1 2540 82 3 28 chr1 117972962 117973326 -164220338 - L1P4 LINE L1 -369 5792 5438 2304 234 96 11 chr1 117973369 117973985 -164219679 + MER76 LTR ERV 21 688 0 237 208 0 111 chr1 117974645 117974717 -164218947 - MER101B LTR ERV1 -353 217 154 751 186 134 6 chr1 117974789 117974961 -164218703 - LTR49-int LTR ERV1 -4767 1564 1371 2106 211 64 16 chr1 117975084 117975600 -164218064 - LTR49-int LTR ERV1 -4949 1382 842 1231 165 55 0 chr1 117975680 117975898 -164217766 - MSTB LTR MaLR 0 426 197 1819 204 24 33 chr1 117975921 117976773 -164216891 - LTR49-int LTR ERV1 -4447 1499 1 600 205 16 8 chr1 117976775 117976902 -164216762 - LTR49 LTR ERV1 0 595 468 2252 109 0 0 chr1 117977278 117977589 -164216075 + AluY SINE Alu 1 311 0 722 233 62 6 chr1 117978409 117978585 -164215079 - MER101B LTR ERV1 -316 254 69 4186 196 95 126 chr1 117978598 117980407 -164213257 + MER52A LTR ERV1 2 1755 0 295 195 39 52 chr1 117980407 117980472 -164213192 - MER101B LTR ERV1 -504 66 3 1141 235 77 37 chr1 117980518 117980897 -164212767 + MSTD LTR MaLR 3 396 0 27 29 0 0 chr1 117980963 117980997 -164212667 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr1 117981039 117981078 -164212586 + AT_rich Low_complexity Low_complexity 1 39 0 41640 41 23 3 chr1 117981351 117987383 -164206281 - L1PA3 LINE L1 0 6155 1 22 0 0 0 chr1 117987801 117987823 -164205841 + AT_rich Low_complexity Low_complexity 1 22 0 656 232 55 12 chr1 117987843 117988007 -164205657 + L1MB7 LINE L1 5865 6035 -149 22 0 0 0 chr1 117988053 117988075 -164205589 + AT_rich Low_complexity Low_complexity 1 22 0 188 88 59 0 chr1 117990097 117990131 -164203533 + (CATA)n Simple_repeat Simple_repeat 3 38 0 1388 198 74 0 chr1 117990131 117990455 -164203209 - MER7A DNA MER2_type 0 346 1 321 26 0 0 chr1 117990795 117990833 -164202831 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 57 0 0 chr1 117991194 117991229 -164202435 + AT_rich Low_complexity Low_complexity 1 35 0 2385 259 129 49 chr1 117991512 117992602 -164201062 + L1M4c LINE L1 3 1239 -5145 2115 121 3 13 chr1 117992602 117992909 -164200755 + AluSg SINE Alu 1 304 -6 2385 259 129 49 chr1 117992909 117993259 -164200405 + L1M4c LINE L1 1239 1559 -4825 * 3565 174 48 26 chr1 117993229 117993868 -164199796 + THE1-int LTR MaLR 496 1154 -426 8280 66 6 2 chr1 117993868 117994935 -164198729 + MER11C LTR ERVK 1 1071 0 3565 174 48 26 chr1 117994935 117994997 -164198667 + THE1-int LTR MaLR 1154 1213 -367 31 0 0 0 chr1 117995802 117995833 -164197831 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr1 117996040 117996070 -164197594 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 117996384 117996412 -164197252 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 117996570 117996593 -164197071 + AT_rich Low_complexity Low_complexity 1 23 0 1583 120 117 4 chr1 117996894 117997168 -164196496 + AluSg SINE Alu 1 305 -5 237 233 0 17 chr1 117997788 117997848 -164195816 + GA-rich Low_complexity Low_complexity 3 61 0 208 156 0 78 chr1 117997860 117997924 -164195740 + (TTAAA)n Simple_repeat Simple_repeat 5 63 0 22 56 0 0 chr1 117998378 117998414 -164195250 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr1 117999277 117999312 -164194352 + AT_rich Low_complexity Low_complexity 1 35 0 2165 114 7 3 chr1 118000797 118001096 -164192568 + AluSx SINE Alu 1 300 -12 23 68 0 0 chr1 118001157 118001201 -164192463 + AT_rich Low_complexity Low_complexity 1 44 0 24 91 0 0 chr1 118001299 118001365 -164192299 + AT_rich Low_complexity Low_complexity 1 66 0 21 71 0 0 chr1 118001709 118001751 -164191913 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr1 118001920 118001955 -164191709 + AT_rich Low_complexity Low_complexity 1 35 0 1893 215 104 8 chr1 118002187 118002288 -164191376 - MER44D DNA MER2_type -1882 605 515 180 111 0 0 chr1 118002288 118002315 -164191349 + (CATA)n Simple_repeat Simple_repeat 3 29 0 1893 215 104 8 chr1 118002315 118002715 -164190949 - MER44D DNA MER2_type -1972 515 1 229 286 10 0 chr1 118002836 118002934 -164190730 - L1MEc LINE L1 -4885 1511 1413 23 0 0 0 chr1 118003114 118003137 -164190527 + AT_rich Low_complexity Low_complexity 1 23 0 720 246 18 12 chr1 118003382 118003553 -164190111 - MLT1E LTR MaLR 0 654 483 1836 90 67 0 chr1 118003571 118003839 -164189825 + AluSp SINE Alu 1 286 -27 187 30 30 30 chr1 118003847 118003880 -164189784 + (TTA)n Simple_repeat Simple_repeat 2 34 0 513 111 0 44 chr1 118003884 118003974 -164189690 - L1MA3 LINE L1 0 6305 6220 1087 308 48 32 chr1 118003996 118004370 -164189294 - MLT1E LTR MaLR -163 430 51 349 244 24 0 chr1 118004763 118004845 -164188819 - ORSL DNA AcHobo -1 274 191 509 340 74 37 chr1 118005011 118005337 -164188327 + LTR33 LTR ERVL 2 339 -182 3743 228 56 8 chr1 118005337 118006634 -164187030 + L1MB1 LINE L1 4450 5842 -326 4978 163 11 7 chr1 118006634 118007518 -164186146 + L1MC1 LINE L1 5433 6320 -13 3743 228 56 8 chr1 118007518 118007860 -164185804 + L1MB1 LINE L1 5842 6166 -2 183 129 0 0 chr1 118008542 118008573 -164185091 + (TG)n Simple_repeat Simple_repeat 2 32 0 1816 158 0 3 chr1 118009983 118010287 -164183377 + AluSx SINE Alu 1 303 0 671 284 41 98 chr1 118011194 118012007 -164181657 - L2 LINE L2 0 3313 1429 21 57 0 0 chr1 118012097 118012132 -164181532 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 118012166 118012190 -164181474 + AT_rich Low_complexity Low_complexity 1 24 0 796 272 60 0 chr1 118012207 118012443 -164181221 - MLT1E1 LTR MaLR -7 617 390 1237 71 0 22 chr1 118012444 118012573 -164181091 + (TTTC)n Simple_repeat Simple_repeat 1 306 0 1237 71 0 22 chr1 118012573 118012757 -164180907 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chr1 118012857 118012881 -164180783 + (TTCCC)n Simple_repeat Simple_repeat 2 25 0 287 123 68 68 chr1 118012884 118012957 -164180707 + MLT1E3 LTR MaLR 370 442 -182 289 323 43 18 chr1 118012970 118013196 -164180468 - MLT1E1 LTR MaLR -254 400 33 806 123 8 0 chr1 118013196 118013318 -164180346 - L1P LINE L1 -2059 4367 4245 280 35 104 61 chr1 118013323 118013438 -164180226 + (CAATT)n Simple_repeat Simple_repeat 5 124 0 1563 256 127 41 chr1 118013446 118014411 -164179253 - L1MCa LINE L1 -2169 4257 3377 1505 203 7 7 chr1 118014411 118014697 -164178967 - AluJo SINE Alu -20 292 7 1563 256 127 41 chr1 118014697 118015245 -164178419 - L1MCa LINE L1 -3049 3377 1942 216 0 0 0 chr1 118015268 118015292 -164178372 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1515 123 21 4 chr1 118015292 118015527 -164178137 - L1PA10 LINE L1 -21 6147 5909 216 0 0 0 chr1 118015535 118015559 -164178105 + (T)n Simple_repeat Simple_repeat 1 24 0 885 227 75 53 chr1 118015559 118015975 -164177689 - L1MCa LINE L1 -4653 1775 1310 329 281 30 35 chr1 118016429 118016632 -164177032 - L1MCa LINE L1 -5102 1324 1123 1084 260 19 29 chr1 118016672 118016987 -164176677 + MER74A LTR ERVL 1 312 -246 181 419 12 6 chr1 118017207 118017367 -164176297 + L2 LINE L2 3121 3281 -32 184 299 91 0 chr1 118017405 118017482 -164176182 - MIR SINE MIR -1 261 178 28 79 0 0 chr1 118017805 118017868 -164175796 + AT_rich Low_complexity Low_complexity 1 63 0 29 28 0 0 chr1 118018208 118018244 -164175420 + AT_rich Low_complexity Low_complexity 1 36 0 33 25 0 0 chr1 118018366 118018406 -164175258 + AT_rich Low_complexity Low_complexity 1 40 0 246 259 0 0 chr1 118019193 118019252 -164174412 + (TA)n Simple_repeat Simple_repeat 1 59 0 1057 287 163 24 chr1 118019766 118020275 -164173389 - MLT1E LTR MaLR -13 580 1 21 57 0 0 chr1 118020456 118020491 -164173173 + AT_rich Low_complexity Low_complexity 1 35 0 222 352 0 23 chr1 118020509 118020597 -164173067 - L2 LINE L2 -10 3303 3218 453 202 109 22 chr1 118021030 118021199 -164172465 - L1 LINE L1 -2193 3953 3773 180 0 0 0 chr1 118022604 118022624 -164171040 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 236 129 48 16 chr1 118022721 118022783 -164170881 + (TA)n Simple_repeat Simple_repeat 1 64 0 1981 122 24 0 chr1 118022993 118023287 -164170377 + AluSq SINE Alu 1 301 -12 24 77 0 0 chr1 118023589 118023641 -164170023 + AT_rich Low_complexity Low_complexity 1 52 0 2235 116 0 3 chr1 118023960 118024305 -164169359 + AluSg SINE Alu 1 344 0 1767 136 7 3 chr1 118024768 118025089 -164168575 + AluSg SINE Alu 23 344 0 22 80 0 0 chr1 118025366 118025416 -164168248 + AT_rich Low_complexity Low_complexity 1 50 0 2039 121 16 0 chr1 118026242 118026549 -164167115 - AluSp SINE Alu -1 312 1 425 253 165 6 chr1 118026861 118027019 -164166645 - MERVL LTR ERVL -2550 2446 2264 * 923 298 67 62 chr1 118026994 118027693 -164165971 - MERVL LTR ERVL -2582 2414 1712 396 366 94 0 chr1 118027813 118028026 -164165638 - LTR16A LTR ERVL -142 308 76 1982 117 0 7 chr1 118029098 118029424 -164164240 + AluSg SINE Alu 1 324 0 27 49 0 0 chr1 118030359 118030400 -164163264 + AT_rich Low_complexity Low_complexity 1 41 0 1940 138 54 34 chr1 118030751 118031105 -164162559 + THE1B LTR MaLR 4 364 0 501 210 8 0 chr1 118031317 118031436 -164162228 - L1MA4 LINE L1 -5 6295 6176 4017 193 20 45 chr1 118031436 118032378 -164161286 - L1MA4 LINE L1 -743 5403 4570 2044 135 0 3 chr1 118032378 118032675 -164160989 - AluSq SINE Alu -17 296 1 4017 193 20 45 chr1 118032675 118032931 -164160733 - L1MA4 LINE L1 -1576 4570 4309 23 0 0 0 chr1 118033138 118033161 -164160503 + AT_rich Low_complexity Low_complexity 1 23 0 734 261 89 0 chr1 118034225 118034428 -164159236 + MLT1D LTR MaLR 261 481 -24 23 0 0 0 chr1 118035451 118035474 -164158190 + AT_rich Low_complexity Low_complexity 1 23 0 1017 244 62 12 chr1 118035581 118035823 -164157841 - MLT1E LTR MaLR -6 587 334 187 91 23 23 chr1 118035912 118035956 -164157708 + (TATAA)n Simple_repeat Simple_repeat 4 47 0 562 278 24 0 chr1 118035961 118036087 -164157577 - MLT1E LTR MaLR -439 154 26 51 51 0 0 chr1 118036242 118036321 -164157343 + AT_rich Low_complexity Low_complexity 1 79 0 367 363 111 20 chr1 118036323 118036766 -164156898 + HAL1b LINE L1 335 817 -531 1139 303 59 53 chr1 118036969 118038042 -164155622 + L1M4c LINE L1 699 1777 -4607 203 320 0 0 chr1 118038044 118038094 -164155570 + (CA)n Simple_repeat Simple_repeat 2 51 0 1117 139 26 5 chr1 118038301 118038495 -164155169 + Tigger2 DNA MER2_type 1729 1926 -792 7286 168 30 10 chr1 118038514 118039866 -164153798 + Tigger2 DNA MER2_type 38 1416 -1302 1979 207 58 12 chr1 118039866 118040714 -164152950 + L1M4 LINE L1 4880 5770 -408 183 341 56 16 chr1 118042456 118042582 -164151082 - L2 LINE L2 0 3313 3183 739 293 46 18 chr1 118042982 118043262 -164150402 + LTR68 LTR ERV1 1 288 -452 551 260 293 3 chr1 118043292 118043547 -164150117 + LTR68 LTR ERV1 333 513 -227 372 77 0 0 chr1 118043547 118043599 -164150065 + (TA)n Simple_repeat Simple_repeat 1 52 0 551 260 293 3 chr1 118043599 118043643 -164150021 + LTR68 LTR ERV1 513 719 -21 282 206 0 0 chr1 118044407 118044475 -164149189 + (TA)n Simple_repeat Simple_repeat 2 69 0 254 241 35 0 chr1 118044893 118044980 -164148684 + A-rich Low_complexity Low_complexity 3 92 0 490 289 82 64 chr1 118045220 118045313 -164148351 + L1M4 LINE L1 4386 4476 -1670 1764 57 0 35 chr1 118045313 118045543 -164148121 + AluY SINE Alu 80 301 -10 490 289 82 64 chr1 118045543 118045903 -164147761 + L1M4 LINE L1 4476 4847 -1299 21 36 0 0 chr1 118045994 118046022 -164147642 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr1 118046836 118046863 -164146801 + AT_rich Low_complexity Low_complexity 1 27 0 1438 247 51 67 chr1 118047685 118048211 -164145453 + LTR40a LTR ERVL 2 519 0 943 309 56 26 chr1 118048944 118049516 -164144148 - L1ME3A LINE L1 -286 5884 5296 431 128 77 0 chr1 118049624 118049702 -164143962 - L1MA3 LINE L1 -9 6296 6213 357 24 0 0 chr1 118050268 118050310 -164143354 + (TG)n Simple_repeat Simple_repeat 2 43 0 30 0 0 0 chr1 118051171 118051201 -164142463 + AT_rich Low_complexity Low_complexity 1 30 0 1695 220 0 12 chr1 118051562 118051899 -164141765 - MER52A LTR ERV1 0 1755 1423 * 5233 196 69 87 chr1 118051893 118053306 -164140358 - MER52A LTR ERV1 -285 1470 1 26 0 0 0 chr1 118053717 118053743 -164139921 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 118054150 118054171 -164139493 + AT_rich Low_complexity Low_complexity 1 21 0 1302 235 136 27 chr1 118054929 118055342 -164138322 + MER31B LTR ERV1 1 458 -8 21 36 0 0 chr1 118055806 118055834 -164137830 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr1 118056246 118056278 -164137386 + (TA)n Simple_repeat Simple_repeat 1 32 0 258 289 12 0 chr1 118056579 118056662 -164137002 - L1MC/D LINE L1 -776 5466 5383 768 286 64 15 chr1 118056890 118057233 -164136431 - L1MC/D LINE L1 -1052 5094 4735 235 331 23 6 chr1 118057437 118057609 -164136055 + L1ME3A LINE L1 5760 5934 -236 1200 221 20 4 chr1 118057680 118057933 -164135731 + AluJo SINE Alu 43 299 -13 880 296 162 65 chr1 118059214 118059919 -164133745 + L2 LINE L2 2158 2930 -384 446 0 19 0 chr1 118060022 118060078 -164133586 + (TCTA)n Simple_repeat Simple_repeat 1 112 0 446 0 19 0 chr1 118060078 118060132 -164133532 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1870 157 23 0 chr1 118060335 118060641 -164133023 + AluSq SINE Alu 1 313 0 349 182 0 26 chr1 118060643 118060720 -164132944 + L1MC3 LINE L1 6877 6951 -834 276 303 0 0 chr1 118060719 118060785 -164132879 - L1MC/D LINE L1 -650 5592 5527 * 1957 115 23 10 chr1 118060887 118061191 -164132473 - AluSx SINE Alu -1 311 4 21 0 0 0 chr1 118061303 118061324 -164132340 + AT_rich Low_complexity Low_complexity 1 21 0 2760 227 87 58 chr1 118061346 118063731 -164129933 - L1MCb LINE L1 -3997 2567 16 643 240 0 0 chr1 118063884 118064009 -164129655 + FLAM_C SINE Alu 6 130 -13 27 0 0 0 chr1 118064009 118064036 -164129628 + AT_rich Low_complexity Low_complexity 1 27 0 2276 161 54 12 chr1 118064138 118064547 -164129117 - MSTB LTR MaLR 0 426 1 1984 118 10 56 chr1 118064587 118065209 -164128455 - LTR8 LTR ERV1 0 691 1 940 236 16 99 chr1 118065458 118065822 -164127842 + MER72 LTR ERV1 7 340 -382 5190 150 35 6 chr1 118065832 118066909 -164126755 - L1P4 LINE L1 -684 5490 4382 234 245 0 0 chr1 118066906 118066959 -164126705 - HAL1 LINE L1 -1676 831 779 * 343 236 12 18 chr1 118067025 118067190 -164126474 + (TA)n Simple_repeat Simple_repeat 2 165 0 318 169 0 15 chr1 118067190 118067255 -164126409 - L1MC4 LINE L1 -1339 6703 6640 330 354 76 46 chr1 118067263 118067591 -164126073 - HAL1 LINE L1 -1814 693 356 671 313 116 8 chr1 118070159 118070427 -164123237 - LTR33 LTR ERVL -179 342 46 200 314 65 78 chr1 118070730 118071039 -164122625 - L2 LINE L2 -809 2505 2201 248 344 23 55 chr1 118071185 118071313 -164122351 - L2 LINE L2 -33 3239 3116 57 28 0 0 chr1 118071709 118071780 -164121884 + AT_rich Low_complexity Low_complexity 1 71 0 2167 270 93 55 chr1 118071802 118073461 -164120203 + L1ME1 LINE L1 60 1777 -4619 20651 159 24 14 chr1 118073495 118077051 -164116613 + L1M1 LINE L1 12 3603 -3962 966 107 7 0 chr1 118077052 118077202 -164116462 + L1MA3 LINE L1 5787 5937 -368 249 57 0 0 chr1 118077219 118077254 -164116410 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 496 120 0 0 chr1 118077273 118077348 -164116316 + L1MA3 LINE L1 6231 6305 0 1159 231 116 40 chr1 118077349 118077636 -164116028 + L1ME1 LINE L1 1852 2116 -4099 1150 262 41 51 chr1 118077636 118078144 -164115520 + MLT1D LTR MaLR 1 503 -2 1159 231 116 40 chr1 118078144 118078805 -164114859 + L1ME1 LINE L1 2116 2828 -3387 734 268 49 14 chr1 118078973 118079257 -164114407 + L1ME1 LINE L1 5048 5341 -874 998 241 41 38 chr1 118079272 118079563 -164114101 - MLT1D LTR MaLR 0 505 214 1598 272 23 35 chr1 118079567 118080348 -164113316 - MLT1D-int LTR MaLR -714 657 1 1975 236 20 18 chr1 118080348 118080852 -164112812 - MLT1D LTR MaLR 0 505 1 1943 278 45 37 chr1 118080912 118081714 -164111950 + L1ME1 LINE L1 5433 6400 -3 740 230 34 0 chr1 118081724 118081872 -164111792 + FRAM SINE Alu 1 153 -23 317 293 71 7 chr1 118081887 118082027 -164111637 + L1ME LINE L1 5157 5305 -841 2016 111 3 40 chr1 118082145 118082469 -164111195 - AluSx SINE Alu 0 312 1 226 213 64 0 chr1 118082513 118082560 -164111104 + AluJ/monomer SINE Alu 1 50 -250 1660 89 5 0 chr1 118082661 118082885 -164110779 + AluSq SINE Alu 86 310 -3 970 178 0 6 chr1 118082897 118083060 -164110604 + AluJb SINE Alu 134 295 -17 230 233 75 33 chr1 118083145 118083265 -164110399 + L1ME LINE L1 5698 5822 -299 23 0 0 0 chr1 118083856 118083879 -164109785 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 118085145 118085169 -164108495 + AT_rich Low_complexity Low_complexity 1 24 0 665 346 72 26 chr1 118086224 118086721 -164106943 - LTR33 LTR ERVL 0 521 2 279 306 16 16 chr1 118086873 118086994 -164106670 - ERVL LTR ERVL -399 5365 5245 333 62 0 0 chr1 118087008 118087056 -164106608 + (TG)n Simple_repeat Simple_repeat 2 49 0 10274 220 69 24 chr1 118087313 118089051 -164104613 + L1M3f LINE L1 3 1661 -4667 189 0 0 0 chr1 118089051 118089072 -164104592 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 10274 220 69 24 chr1 118089072 118089655 -164104009 + L1M3f LINE L1 1661 2216 -4112 1535 197 0 20 chr1 118089655 118089955 -164103709 + AluJb SINE Alu 1 294 -18 10274 220 69 24 chr1 118089955 118090867 -164102797 + L1M3f LINE L1 2216 3085 -3243 180 77 0 0 chr1 118090867 118090893 -164102771 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 10274 220 69 24 chr1 118090893 118092815 -164100849 + L1M3f LINE L1 3085 5387 -941 338 309 43 62 chr1 118092832 118093204 -164100460 - L1M4 LINE L1 -1808 4338 3974 2237 133 41 0 chr1 118093233 118093623 -164100041 - L1MA5A LINE L1 -1 6296 5891 747 85 9 0 chr1 118093623 118093729 -164099935 - L1MA5A LINE L1 -822 5475 5369 2466 150 18 2 chr1 118093779 118094179 -164099485 - MER57B LTR ERV1 -28 406 1 1432 73 126 53 chr1 118094180 118094427 -164099237 - MER57B-int LTR ERV1 -1 7536 7272 590 174 25 8 chr1 118094427 118094548 -164099116 - LTR54B LTR ERV1 -371 127 5 3342 120 14 0 chr1 118094548 118095031 -164098633 - MER57-int LTR ERV1 -387 7150 6661 389 155 14 0 chr1 118095015 118095086 -164098578 + MER51-int LTR ERV1 6774 6845 -971 * 24 24 0 24 chr1 118095145 118095164 -164098500 + AT_rich Low_complexity Low_complexity 1 19 -22 2138 116 0 0 chr1 118095164 118095449 -164098215 + AluSc SINE Alu 1 285 -24 24 24 0 24 chr1 118095449 118095471 -164098193 + AT_rich Low_complexity Low_complexity 19 41 0 643 291 167 30 chr1 118095471 118096464 -164097200 - L1M4 LINE L1 -2299 3847 2710 195 42 0 0 chr1 118096464 118096488 -164097176 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 643 291 167 30 chr1 118096488 118096513 -164097151 - L1M4 LINE L1 -3436 2710 2690 21 36 0 0 chr1 118096883 118096911 -164096753 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 118096983 118097005 -164096659 + AT_rich Low_complexity Low_complexity 1 22 0 2498 187 12 2 chr1 118097015 118097508 -164096156 - L1MA6 LINE L1 0 6300 5803 3154 135 16 26 chr1 118097511 118098280 -164095384 + L1MA6 LINE L1 5061 5826 -474 23 0 0 0 chr1 118098533 118098556 -164095108 + AT_rich Low_complexity Low_complexity 1 23 0 487 341 56 20 chr1 118098863 118099112 -164094552 + MIR SINE MIR 5 262 0 24 0 0 0 chr1 118099545 118099569 -164094095 + AT_rich Low_complexity Low_complexity 1 24 0 374 293 133 16 chr1 118100204 118100392 -164093272 - MIR SINE MIR -50 212 3 279 366 173 0 chr1 118100557 118100748 -164092916 + MIR SINE MIR 28 251 -11 23 33 0 0 chr1 118100901 118100931 -164092733 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 118101697 118101726 -164091938 + AT_rich Low_complexity Low_complexity 1 29 0 269 325 16 8 chr1 118101899 118102022 -164091642 - LTR67 LTR ERVL 0 557 434 247 331 13 33 chr1 118102181 118102332 -164091332 + L1MEc LINE L1 115 262 -6134 22 88 0 0 chr1 118105173 118105230 -164088434 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr1 118105397 118105421 -164088243 + AT_rich Low_complexity Low_complexity 1 24 0 2102 201 29 7 chr1 118106896 118107315 -164086349 - MSTA LTR MaLR 0 428 1 7882 188 34 33 chr1 118107315 118108965 -164084699 - MSTA-int LTR MaLR 0 1651 1 1933 193 51 36 chr1 118108972 118109387 -164084277 - MSTA LTR MaLR -7 421 1 330 381 9 0 chr1 118110546 118110651 -164083013 + L2 LINE L2 3127 3232 -40 399 153 15 30 chr1 118111181 118111312 -164082352 + (TA)n Simple_repeat Simple_repeat 2 130 0 13279 178 30 25 chr1 118112811 118117968 -164075696 - L1MA2 LINE L1 0 7723 2521 1782 168 0 7 chr1 118117968 118118274 -164075390 + AluSx SINE Alu 1 304 0 13279 178 30 25 chr1 118118274 118118967 -164074697 - L1MA2 LINE L1 -5202 2521 1833 246 329 12 24 chr1 118169022 118169107 -164024557 - LTR16A LTR ERVL -256 194 111 257 357 21 14 chr1 118169742 118169882 -164023782 - HERV16 LTR ERVL -847 4917 4777 570 401 47 2 chr1 118170067 118170496 -164023168 - HERV16 LTR ERVL -1174 4590 4143 620 336 48 43 chr1 118171012 118171387 -164022277 - HERV16 LTR ERVL -2517 2479 2103 290 352 14 14 chr1 118171662 118171804 -164021860 - HERV16 LTR ERVL -4348 648 507 641 164 0 35 chr1 118171923 118172039 -164021625 + AluJb SINE Alu 172 310 0 244 0 0 0 chr1 118172039 118172066 -164021598 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 250 314 26 52 chr1 118172173 118172326 -164021338 - L2 LINE L2 -1544 1770 1622 211 269 19 0 chr1 118172428 118172480 -164021184 - L2 LINE L2 -1679 1635 1583 388 357 36 40 chr1 118172530 118172779 -164020885 - L2 LINE L2 -1847 1467 1220 189 0 0 0 chr1 118172885 118172906 -164020758 + (TA)n Simple_repeat Simple_repeat 2 22 0 2446 56 0 7 chr1 118172906 118173210 -164020454 - AluY SINE Alu -9 302 1 385 336 137 18 chr1 118173647 118173989 -164019675 - L2 LINE L2 -2211 1103 721 180 319 128 44 chr1 118174536 118174809 -164018855 - L3 LINE CR1 -289 1288 993 26 50 0 0 chr1 118175162 118175202 -164018462 + AT_rich Low_complexity Low_complexity 1 40 0 2525 76 0 0 chr1 118176006 118176334 -164017330 - L1PA7 LINE L1 -45 6109 5782 1845 258 37 32 chr1 118176335 118177099 -164016565 - L1M4c LINE L1 -3249 3133 2363 30 59 0 0 chr1 118177102 118177153 -164016511 + AT_rich Low_complexity Low_complexity 1 51 0 399 21 0 0 chr1 118177184 118177232 -164016432 + (TA)n Simple_repeat Simple_repeat 1 48 0 372 303 61 0 chr1 118177232 118177364 -164016300 - L1M4c LINE L1 -4076 2308 2169 2904 107 18 5 chr1 118177378 118177818 -164015846 + L1MA3 LINE L1 5582 6027 -278 395 275 72 30 chr1 118177912 118178255 -164015409 - L1M4c LINE L1 -4221 2163 1719 1217 173 16 0 chr1 118178653 118178907 -164014757 - L1MA2 LINE L1 0 6304 6047 12773 180 35 26 chr1 118178907 118179864 -164013800 - L1MA1 LINE L1 -4 7717 6771 1998 148 7 0 chr1 118179864 118180168 -164013496 - AluSx SINE Alu -2 310 5 12773 180 35 26 chr1 118180168 118184935 -164008729 - L1MA1 LINE L1 -950 6771 1916 23 68 0 0 chr1 118185280 118185324 -164008340 + AT_rich Low_complexity Low_complexity 1 44 0 27 0 0 0 chr1 118185371 118185398 -164008266 + AT_rich Low_complexity Low_complexity 1 27 0 2297 99 0 3 chr1 118186346 118186660 -164007004 - AluSq SINE Alu 0 313 1 483 18 0 0 chr1 118186816 118186872 -164006792 + (TG)n Simple_repeat Simple_repeat 1 56 0 213 284 0 0 chr1 118186872 118186939 -164006725 + GA-rich Low_complexity Low_complexity 4 70 0 35 41 0 0 chr1 118187847 118187896 -164005768 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr1 118188006 118188036 -164005628 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr1 118188164 118188211 -164005453 + AT_rich Low_complexity Low_complexity 1 47 0 227 288 0 0 chr1 118188919 118188985 -164004679 + (TA)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chr1 118189249 118189279 -164004385 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr1 118189630 118189666 -164003998 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 118190091 118190115 -164003549 + AT_rich Low_complexity Low_complexity 1 24 0 1283 195 16 12 chr1 118190118 118190375 -164003289 - Tigger2 DNA MER2_type 0 2718 2461 4209 157 23 11 chr1 118190445 118191180 -164002484 - Tigger2 DNA MER2_type -1974 744 1 252 173 0 0 chr1 118191195 118191247 -164002417 - L1MC4 LINE L1 -1339 6703 6652 308 188 14 0 chr1 118191278 118191347 -164002317 + (TA)n Simple_repeat Simple_repeat 1 70 0 9746 129 22 7 chr1 118191360 118191616 -164002048 - L1MA8 LINE L1 -14 6277 6026 11967 113 11 20 chr1 118191616 118194372 -163999292 - L1PA7 LINE L1 0 6469 3783 9746 129 22 7 chr1 118194372 118195882 -163997782 - L1MA8 LINE L1 -265 6026 1591 3009 130 22 24 chr1 118195866 118195946 -163997718 - L1PA7 LINE L1 -5962 499 420 * 297 68 0 0 chr1 118195946 118195990 -163997674 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 3009 130 22 24 chr1 118195990 118196402 -163997262 - L1PA7 LINE L1 -6041 420 8 1236 199 27 117 chr1 118196417 118196819 -163996845 - L1MA6 LINE L1 -257 6043 5678 180 111 0 0 chr1 118196840 118196867 -163996797 + (TG)n Simple_repeat Simple_repeat 2 28 0 5132 190 19 14 chr1 118197521 118198627 -163995037 + L1PA16 LINE L1 4060 5192 -974 191 88 29 0 chr1 118198627 118198661 -163995003 + (CAA)n Simple_repeat Simple_repeat 2 36 0 5132 190 19 14 chr1 118198661 118199633 -163994031 + L1PA16 LINE L1 5192 6157 -9 11961 168 39 28 chr1 118200495 118202376 -163991288 + Tigger1 DNA MER2_type 1 1860 -558 1846 148 14 0 chr1 118202376 118202667 -163990997 - AluSx SINE Alu -17 295 1 11961 168 39 28 chr1 118202667 118203104 -163990560 + Tigger1 DNA MER2_type 1860 2291 -127 539 41 27 0 chr1 118203104 118203177 -163990487 + (TTTTA)n Simple_repeat Simple_repeat 5 79 0 2098 97 3 21 chr1 118203184 118203474 -163990190 - AluSx SINE Alu -22 290 6 11961 168 39 28 chr1 118203474 118203538 -163990126 + Tigger1 DNA MER2_type 2296 2418 0 745 142 28 14 chr1 118203606 118203747 -163989917 + MER2 DNA MER2_type 64 206 -139 2206 133 11 3 chr1 118203785 118204139 -163989525 - L1PB1 LINE L1 -1 6150 5794 2821 224 6 17 chr1 118204140 118204829 -163988835 - L1MA6 LINE L1 -944 5202 4522 2567 142 318 20 chr1 118204828 118205467 -163988197 - L1PBa LINE L1 -5401 1462 634 * 894 205 20 5 chr1 118205467 118205662 -163988002 - L1PBa LINE L1 -6663 200 3 309 185 0 0 chr1 118205882 118205947 -163987717 + (TA)n Simple_repeat Simple_repeat 1 65 0 2152 154 60 34 chr1 118206987 118207402 -163986262 - MSTB LTR MaLR 0 426 1 1076 142 9 14 chr1 118207436 118207647 -163986017 + L1PB1 LINE L1 5942 6151 0 389 325 83 40 chr1 118208136 118208514 -163985150 - L1MCa LINE L1 -4419 2007 1475 614 304 68 16 chr1 118208840 118209225 -163984439 + L1MC4a LINE L1 5283 5687 -2121 23 0 0 0 chr1 118209365 118209388 -163984276 + AT_rich Low_complexity Low_complexity 1 23 0 287 291 19 0 chr1 118209741 118209844 -163983820 + L1MC4a LINE L1 6611 6715 -1093 365 282 59 18 chr1 118210634 118210804 -163982860 - L2 LINE L2 -79 3234 3058 * 654 325 138 0 chr1 118210801 118211106 -163982558 - L2 LINE L2 -423 2891 2545 219 94 38 19 chr1 118211706 118211759 -163981905 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 21 0 0 0 chr1 118212113 118212134 -163981530 + AT_rich Low_complexity Low_complexity 1 21 0 994 176 165 89 chr1 118212219 118212577 -163981087 - MLT1B LTR MaLR -5 385 1 1494 128 0 9 chr1 118212688 118212907 -163980757 + AluSx SINE Alu 1 217 -95 284 172 0 16 chr1 118213598 118213662 -163980002 + (TA)n Simple_repeat Simple_repeat 1 63 0 279 167 15 45 chr1 118213835 118213901 -163979763 - MADE1 DNA Mariner 0 80 17 231 229 110 37 chr1 118214002 118214111 -163979553 + FAM SINE Alu 58 174 -1 227 305 85 51 chr1 118214716 118214774 -163978890 + MIR SINE MIR 97 152 -110 1375 193 94 37 chr1 118214774 118215126 -163978538 + MLT1A2 LTR MaLR 1 372 -2 227 305 85 51 chr1 118215126 118215185 -163978479 + MIR SINE MIR 152 218 -44 2367 69 0 10 chr1 118215650 118215954 -163977710 + AluY SINE Alu 1 301 -10 21 0 0 0 chr1 118216216 118216237 -163977427 + AT_rich Low_complexity Low_complexity 1 21 0 390 322 89 35 chr1 118216279 118216593 -163977071 + L1ME LINE L1 5471 5801 -365 22 35 0 0 chr1 118216842 118216871 -163976793 + AT_rich Low_complexity Low_complexity 1 29 0 249 231 39 87 chr1 118217533 118217616 -163976048 + LTR33A LTR ERVL 60 139 -384 1687 209 34 6 chr1 118217616 118217971 -163975693 + MLT1A1 LTR MaLR 1 365 0 249 231 39 87 chr1 118217971 118217991 -163975673 + LTR33A LTR ERVL 139 158 -365 227 320 82 25 chr1 118218517 118218639 -163975025 - MIR SINE MIR -10 252 124 21 36 0 0 chr1 118219263 118219291 -163974373 + AT_rich Low_complexity Low_complexity 1 28 0 683 345 79 38 chr1 118220597 118221157 -163972507 + L2 LINE L2 2252 2834 -480 692 133 30 78 chr1 118221202 118221368 -163972296 - L1PA3 LINE L1 -4 6151 5994 6958 74 12 6 chr1 118221476 118223146 -163970518 - L1PA6 LINE L1 -96 6058 4388 675 307 70 63 chr1 118223150 118223577 -163970087 + L2 LINE L2 2880 3309 -4 2086 119 0 3 chr1 118224792 118225086 -163968578 - AluSc SINE Alu -16 293 1 23 33 0 0 chr1 118225342 118225372 -163968292 + AT_rich Low_complexity Low_complexity 1 30 0 2623 69 3 0 chr1 118225869 118226218 -163967446 + L1PA7 LINE L1 5803 6152 -2 24 0 0 0 chr1 118226589 118226613 -163967051 + AT_rich Low_complexity Low_complexity 1 24 0 376 340 125 10 chr1 118226775 118226975 -163966689 + L2 LINE L2 1960 2182 -1132 558 305 117 54 chr1 118226998 118227427 -163966237 + L2 LINE L2 2325 2780 -534 3051 220 171 24 chr1 118228167 118229161 -163964503 + L1 LINE L1 2673 3812 -2334 850 220 31 9 chr1 118229157 118229380 -163964284 - L1 LINE L1 -2099 5466 5239 * 2514 201 30 18 chr1 118229385 118230336 -163963328 - L1 LINE L1 -3472 4093 3136 1128 199 49 13 chr1 118230315 118230501 -163963163 - L1 LINE L1 -4814 2751 2573 * 1825 168 7 3 chr1 118230501 118230804 -163962860 - AluSx SINE Alu -8 304 1 1128 199 49 13 chr1 118230804 118233070 -163960594 - L1 LINE L1 -4992 2573 99 297 0 0 0 chr1 118233070 118233103 -163960561 + (TG)n Simple_repeat Simple_repeat 2 34 0 1128 199 49 13 chr1 118233103 118233191 -163960473 - L1 LINE L1 -7466 99 16 651 230 42 31 chr1 118233172 118233363 -163960301 - L1 LINE L1 -7360 205 13 * 1096 252 42 37 chr1 118233436 118233837 -163959827 - LTR52 LTR ERVL -18 403 1 201 287 42 60 chr1 118234194 118234361 -163959303 - L2 LINE L2 -4 3309 3146 253 130 0 0 chr1 118234418 118234464 -163959200 + L1MC4 LINE L1 6658 6703 -1339 1221 310 163 28 chr1 118234502 118235441 -163958223 - L2 LINE L2 -148 3165 2097 518 306 50 50 chr1 118235599 118235880 -163957784 + MLT1J LTR MaLR 229 509 -2 197 151 19 0 chr1 118235946 118235999 -163957665 + (TA)n Simple_repeat Simple_repeat 1 54 0 23909 38 3 0 chr1 118235999 118239705 -163953959 - L1PA5 LINE L1 -9 6145 2422 27 81 0 0 chr1 118241290 118241352 -163952312 + AT_rich Low_complexity Low_complexity 1 62 0 1705 159 3 7 chr1 118241363 118241646 -163952018 - AluSq SINE Alu -21 292 11 21 36 0 0 chr1 118241880 118241908 -163951756 + AT_rich Low_complexity Low_complexity 1 28 0 356 291 80 26 chr1 118242103 118242254 -163951410 + MIR SINE MIR 102 260 -2 25 31 0 0 chr1 118243295 118243327 -163950337 + AT_rich Low_complexity Low_complexity 1 32 0 691 194 0 8 chr1 118243851 118243985 -163949679 + FLAM_C SINE Alu 1 133 0 183 371 34 0 chr1 118244252 118244341 -163949323 + L2 LINE L2 1021 1112 -2202 470 326 53 33 chr1 118244375 118244620 -163949044 + L2 LINE L2 1110 1359 -1955 31 0 0 0 chr1 118245628 118245659 -163948005 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr1 118246355 118246384 -163947280 + AT_rich Low_complexity Low_complexity 1 29 0 270 263 26 103 chr1 118246984 118247140 -163946524 - MIR SINE MIR 0 262 119 275 281 56 0 chr1 118248024 118248113 -163945551 + L1MD3 LINE L1 7869 7962 -33 2052 129 3 24 chr1 118248272 118248643 -163945021 - L1MA1 LINE L1 0 7721 7359 14809 183 28 44 chr1 118248735 118249834 -163943830 - L1MA1 LINE L1 -354 7369 6254 1869 151 17 0 chr1 118249834 118250126 -163943538 + AluSq SINE Alu 1 297 -16 14809 183 28 44 chr1 118250126 118254888 -163938776 - L1MA1 LINE L1 -1469 6254 1420 2360 19 0 0 chr1 118254888 118255152 -163938512 - AluYb8 SINE Alu -20 298 35 14809 183 28 44 chr1 118255152 118255776 -163937888 - L1MA1 LINE L1 -6303 1420 847 1006 43 0 28 chr1 118255776 118255917 -163937747 + AluY SINE Alu 175 311 0 14809 183 28 44 chr1 118255917 118256217 -163937447 - L1MA1 LINE L1 -6876 847 544 715 332 55 29 chr1 118257004 118257384 -163936280 - L2 LINE L2 -99 3214 2825 761 285 179 6 chr1 118257451 118257770 -163935894 - L2 LINE L2 -686 2628 2255 1602 168 1 5 chr1 118259032 118259313 -163934351 + L1P LINE L1 4005 4284 -1862 187 322 85 34 chr1 118259676 118259794 -163933870 - MIR SINE MIR -62 146 23 221 81 0 27 chr1 118259822 118259859 -163933805 + (TATAA)n Simple_repeat Simple_repeat 2 37 0 756 243 59 5 chr1 118259919 118260121 -163933543 + MER58A DNA MER1_type 4 216 -8 272 208 14 0 chr1 118260149 118260221 -163933443 - MER5C DNA MER1_type -40 284 212 580 246 68 81 chr1 118260381 118260617 -163933047 + MIR SINE MIR 30 262 0 341 321 78 37 chr1 118261503 118261774 -163931890 + L1ME LINE L1 5308 5589 -573 200 226 161 43 chr1 118261811 118261904 -163931760 + MER91C DNA MER1_type 26 129 -11 39 60 0 0 chr1 118262068 118262135 -163931529 + AT_rich Low_complexity Low_complexity 1 67 0 1867 142 4 0 chr1 118262328 118262645 -163931019 + AluSx SINE Alu 9 326 0 24 67 0 0 chr1 118262707 118262752 -163930912 + AT_rich Low_complexity Low_complexity 1 45 0 289 273 136 65 chr1 118263492 118263646 -163930018 - MLT1H LTR MaLR -265 284 120 499 323 123 52 chr1 118263760 118264704 -163928960 - L2 LINE L2 0 3313 2316 262 250 0 0 chr1 118264705 118264765 -163928899 - MLT1C LTR MaLR 0 505 446 691 263 106 48 chr1 118264766 118265056 -163928608 - MLT1C LTR MaLR -132 335 6 1013 188 0 0 chr1 118265089 118265259 -163928405 - AluSg/x SINE Alu -9 301 132 2178 136 0 0 chr1 118265259 118265569 -163928095 - AluSx SINE Alu -2 310 1 263 327 144 13 chr1 118265578 118265731 -163927933 - L2 LINE L2 -1019 2295 2123 511 290 104 13 chr1 118265781 118266012 -163927652 - L2 LINE L2 -1401 1913 1662 195 42 0 0 chr1 118266091 118266115 -163927549 + (A)n Simple_repeat Simple_repeat 1 24 0 240 177 32 0 chr1 118266776 118266838 -163926826 + (TA)n Simple_repeat Simple_repeat 2 65 0 217 131 0 49 chr1 118266848 118266909 -163926755 + (TTAAA)n Simple_repeat Simple_repeat 3 60 0 280 129 50 0 chr1 118266909 118267010 -163926654 + (TA)n Simple_repeat Simple_repeat 2 107 0 30 27 0 0 chr1 118267533 118267570 -163926094 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 118268861 118268890 -163924774 + AT_rich Low_complexity Low_complexity 1 29 0 1642 150 27 0 chr1 118270399 118270699 -163922965 + L1MA5 LINE L1 5981 6288 -12 420 282 56 18 chr1 118270927 118271381 -163922283 + L1MDa LINE L1 1315 1778 -4816 795 229 85 33 chr1 118271390 118271786 -163921878 + MLT1A1 LTR MaLR 1 365 0 253 335 57 16 chr1 118271791 118271985 -163921679 + L1MDa LINE L1 1845 2046 -4675 180 0 0 0 chr1 118272066 118272086 -163921578 + (CAA)n Simple_repeat Simple_repeat 2 21 0 265 301 82 20 chr1 118272278 118272727 -163920937 - L1M4 LINE L1 -2696 3450 2974 408 236 8 8 chr1 118272853 118272980 -163920684 + L1MC/D LINE L1 5122 5248 -898 222 37 0 0 chr1 118272987 118273014 -163920650 + (TG)n Simple_repeat Simple_repeat 2 28 0 2480 243 53 8 chr1 118273056 118273678 -163919986 + MER82 DNA MER2_type 4 653 0 5319 183 51 37 chr1 118273696 118274430 -163919234 + Tigger3b DNA MER2_type 1 760 -2268 5564 40 1 0 chr1 118274430 118275104 -163918560 + L1PA4 LINE L1 5480 6155 0 5319 183 51 37 chr1 118275104 118275583 -163918081 + Tigger3b DNA MER2_type 760 1231 0 337 230 22 56 chr1 118275603 118275781 -163917883 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 * 361 264 29 17 chr1 118275651 118275825 -163917839 + (TA)n Simple_repeat Simple_repeat 1 176 0 325 317 53 9 chr1 118275844 118276032 -163917632 + L1MC/D LINE L1 5360 5555 -654 242 29 29 0 chr1 118276602 118276637 -163917027 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1602 197 4 0 chr1 118276637 118276911 -163916753 - AluSx SINE Alu -37 275 1 5293 226 27 14 chr1 118276916 118278299 -163915365 - L1PA14 LINE L1 -2766 3380 1980 * 8899 167 26 31 chr1 118278297 118278614 -163915050 + L1PA14 LINE L1 3362 3679 -2482 383 0 21 0 chr1 118278614 118278661 -163915003 + (CA)n Simple_repeat Simple_repeat 1 48 0 8899 167 26 31 chr1 118278661 118279761 -163913903 + L1PA14 LINE L1 3679 4783 -1378 1594 165 73 31 chr1 118279761 118279929 -163913735 - THE1C LTR MaLR 0 375 215 231 36 0 0 chr1 118279929 118279957 -163913707 + (GA)n Simple_repeat Simple_repeat 1 28 0 1594 165 73 31 chr1 118279957 118280146 -163913518 - THE1C LTR MaLR -160 215 3 8899 167 26 31 chr1 118280146 118281545 -163912119 + L1PA14 LINE L1 4783 6156 -5 6106 64 144 66 chr1 118281783 118282870 -163910794 + MER11A LTR ERVK 1 1266 0 21 0 0 0 chr1 118284248 118284269 -163909395 + AT_rich Low_complexity Low_complexity 1 21 0 1846 146 42 0 chr1 118286004 118286292 -163907372 + AluSx SINE Alu 1 300 -12 242 322 51 6 chr1 118286627 118286804 -163906860 - L1ME3A LINE L1 -219 5951 5767 2151 91 0 7 chr1 118286909 118287207 -163906457 + AluY SINE Alu 1 296 -15 366 266 103 74 chr1 118287213 118287382 -163906282 - L1ME3A LINE L1 -551 5611 5427 1085 214 22 5 chr1 118287382 118287606 -163906058 - MER46A DNA MER2_type -4 232 5 366 266 103 74 chr1 118287606 118287748 -163905916 - L1ME3A LINE L1 -735 5427 5291 931 307 97 66 chr1 118288027 118288494 -163905170 - L1ME3A LINE L1 -842 5304 4853 2314 45 0 7 chr1 118288494 118288784 -163904880 - L1PA4 LINE L1 0 6155 5868 931 307 97 66 chr1 118288784 118289559 -163904105 - L1ME3A LINE L1 -1293 4853 4023 204 227 0 0 chr1 118289607 118289651 -163904013 + L2 LINE L2 3270 3313 0 21 0 0 0 chr1 118290776 118290797 -163902867 + AT_rich Low_complexity Low_complexity 1 21 0 189 154 0 0 chr1 118290856 118290895 -163902769 + A-rich Low_complexity Low_complexity 2 40 0 26 0 0 0 chr1 118292270 118292296 -163901368 + AT_rich Low_complexity Low_complexity 1 26 0 288 200 0 0 chr1 118292457 118292527 -163901137 + (TA)n Simple_repeat Simple_repeat 1 70 0 2813 7 0 0 chr1 118292579 118292887 -163900777 - AluYa5 SINE Alu -3 308 1 437 223 8 0 chr1 118292971 118293101 -163900563 + (TA)n Simple_repeat Simple_repeat 2 132 0 2201 186 55 5 chr1 118293236 118293640 -163900024 + MSTB LTR MaLR 3 426 0 203 384 47 12 chr1 118294219 118294305 -163899359 - L2 LINE L2 -23 3249 3161 25 90 0 0 chr1 118294932 118294999 -163898665 + AT_rich Low_complexity Low_complexity 1 67 0 21 82 0 0 chr1 118295178 118295227 -163898437 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr1 118295422 118295457 -163898207 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr1 118295672 118295714 -163897950 + AT_rich Low_complexity Low_complexity 1 42 0 386 343 98 13 chr1 118295853 118296089 -163897575 + HAL1 LINE L1 228 483 -2024 588 313 26 40 chr1 118296449 118296797 -163896867 + HAL1 LINE L1 872 1214 -1293 402 292 66 9 chr1 118296820 118297046 -163896618 + HAL1 LINE L1 1371 1609 -898 3202 137 28 3 chr1 118298164 118298742 -163894922 + L1MA5A LINE L1 5703 6294 -3 198 0 0 0 chr1 118299444 118299466 -163894198 + (A)n Simple_repeat Simple_repeat 1 22 0 8369 132 8 2 chr1 118349828 118351110 -163842554 - HERVL LTR ERVL -3596 2058 769 204 231 0 0 chr1 118351673 118351725 -163841939 + CT-rich Low_complexity Low_complexity 2 53 0 269 256 44 33 chr1 118351883 118351973 -163841691 - MER5A DNA MER1_type -87 102 12 721 191 35 6 chr1 118351988 118352161 -163841503 - L1MA7 LINE L1 -2 6289 6112 3395 179 11 12 chr1 118352164 118352812 -163840852 - L1MA9 LINE L1 -286 6026 5380 1358 141 31 0 chr1 118352811 118353066 -163840598 + L1MA9 LINE L1 5118 5380 -766 * 350 95 16 16 chr1 118353184 118353247 -163840417 - LTR5 LTR ERVK 0 969 907 22 0 0 0 chr1 118353350 118353372 -163840292 + AT_rich Low_complexity Low_complexity 1 22 0 288 312 65 14 chr1 118353459 118353597 -163840067 - MER110 LTR ERV1 -113 378 234 1374 291 89 88 chr1 118353952 118355618 -163838046 - MER110-int LTR ERV1 -39 4608 2941 996 209 108 18 chr1 118355618 118355895 -163837769 + LTR41 LTR ERVL 1 302 -471 437 331 26 0 chr1 118356206 118356360 -163837304 - MIR SINE MIR 0 262 105 24 0 0 0 chr1 118356680 118356704 -163836960 + AT_rich Low_complexity Low_complexity 1 24 0 2549 177 15 134 chr1 118357570 118358393 -163835271 - L1MA9 LINE L1 -33 6279 5555 419 298 58 0 chr1 118358494 118358598 -163835066 - L1M3d LINE L1 -5352 539 430 469 293 7 29 chr1 118358902 118359042 -163834622 - L1M3de LINE L1 -5867 786 650 313 358 106 4 chr1 118359040 118359294 -163834370 - L1M3d LINE L1 -5607 284 5 * 202 256 0 0 chr1 118359881 118359924 -163833740 + A-rich Low_complexity Low_complexity 1 43 0 24391 103 6 3 chr1 118360395 118363742 -163829922 - HERVL LTR ERVL -378 5276 1920 38 39 0 0 chr1 118364009 118364061 -163829603 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr1 118364587 118364617 -163829047 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 118364633 118364662 -163829002 + AT_rich Low_complexity Low_complexity 1 29 0 187 403 19 25 chr1 118365112 118365271 -163828393 + L2 LINE L2 2601 2758 -556 184 383 84 9 chr1 118365522 118365629 -163828035 + L2 LINE L2 3122 3236 -36 2029 93 7 7 chr1 118365945 118366235 -163827429 - AluSc SINE Alu -10 299 10 296 289 52 10 chr1 118366365 118366462 -163827202 + L2 LINE L2 2916 3016 -297 26 50 0 0 chr1 118366668 118366708 -163826956 + AT_rich Low_complexity Low_complexity 1 40 0 856 209 86 116 chr1 118367184 118367485 -163826179 - MER66A LTR ERV1 0 478 187 493 312 123 24 chr1 118367746 118368843 -163824821 + L1MEc LINE L1 2183 3339 -2876 268 136 0 0 chr1 118370636 118370680 -163822984 + 5S rRNA rRNA 2 45 -76 26 0 0 0 chr1 118370684 118370710 -163822954 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr1 118371866 118371888 -163821776 + AT_rich Low_complexity Low_complexity 1 22 0 290 389 40 0 chr1 118373935 118374084 -163819580 - MIR3 SINE MIR -7 201 47 21 57 0 0 chr1 118374121 118374156 -163819508 + AT_rich Low_complexity Low_complexity 1 35 0 6890 176 148 45 chr1 118374719 118376309 -163817355 + MER52A LTR ERV1 1 1755 0 2151 129 0 3 chr1 118376547 118376858 -163816806 + AluSx SINE Alu 3 312 0 1352 246 89 43 chr1 118377909 118378349 -163815315 + MLT2B1 LTR ERVL 61 520 0 5440 242 76 10 chr1 118378350 118380067 -163813597 + ERVL-B1 LTR ERVL 2 1876 -3888 5607 194 2 11 chr1 118380209 118381344 -163812320 - L1P LINE L1 -3690 2456 1332 765 329 46 31 chr1 118381344 118382021 -163811643 + L1MEc LINE L1 1311 1997 -4399 27 81 0 0 chr1 118382068 118382130 -163811534 + AT_rich Low_complexity Low_complexity 1 62 0 262 197 0 40 chr1 118382151 118382227 -163811437 + L1MEc LINE L1 2922 2994 -3221 9002 216 40 24 chr1 118382533 118384517 -163809147 + ERVL LTR ERVL 3249 5263 -501 13672 149 5 5 chr1 118384517 118386832 -163806832 - L1P LINE L1 -1366 4780 2466 812 155 1 19 chr1 118386939 118387095 -163806569 - THE1B LTR MaLR -225 150 1 10733 124 6 6 chr1 118387105 118388678 -163804986 - THE1B-int LTR MaLR -6 1574 1 2105 151 14 19 chr1 118388678 118389042 -163804622 - THE1B LTR MaLR 0 364 3 27 0 0 0 chr1 118389619 118389646 -163804018 + AT_rich Low_complexity Low_complexity 1 27 0 864 353 98 39 chr1 118390199 118391458 -163802206 + L2 LINE L2 679 2012 -1302 366 354 34 62 chr1 118391491 118391782 -163801882 + L2 LINE L2 2550 2832 -482 28 29 0 0 chr1 118391808 118391843 -163801821 + AT_rich Low_complexity Low_complexity 1 35 0 1585 175 49 25 chr1 118391878 118392203 -163801461 - THE1B LTR MaLR 0 364 32 5604 112 15 9 chr1 118392303 118393118 -163800546 - THE1B-int LTR MaLR -760 820 1 1889 177 28 19 chr1 118393118 118393479 -163800185 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr1 118393683 118393703 -163799961 + (AGATG)n Simple_repeat Simple_repeat 3 22 0 1140 325 58 40 chr1 118393722 118393966 -163799698 + L2 LINE L2 1124 1362 -1952 1656 199 3 0 chr1 118393966 118394268 -163799396 - AluJb SINE Alu -9 303 1 1140 325 58 40 chr1 118394268 118394645 -163799019 + L2 LINE L2 1362 1756 -1558 528 313 46 90 chr1 118394660 118395005 -163798659 + L2 LINE L2 2558 2887 -427 1281 203 18 124 chr1 118395133 118395533 -163798131 - MLT1C LTR MaLR -71 396 46 2091 119 7 0 chr1 118395533 118395826 -163797838 - AluSx SINE Alu -17 295 1 1281 203 18 124 chr1 118395826 118395868 -163797796 - MLT1C LTR MaLR -421 46 1 254 311 151 46 chr1 118395868 118396106 -163797558 + L2 LINE L2 3051 3313 0 23 33 0 0 chr1 118396903 118396933 -163796731 + AT_rich Low_complexity Low_complexity 1 30 0 189 282 26 51 chr1 118397169 118397247 -163796417 + MIR SINE MIR 81 156 -106 * 219 298 57 48 chr1 118397234 118397358 -163796306 - MIR SINE MIR -6 256 132 500 291 50 64 chr1 118397874 118398438 -163795226 - HAL1 LINE L1 -96 2411 1856 195 129 0 0 chr1 118398717 118398748 -163794916 + (T)n Simple_repeat Simple_repeat 1 31 0 218 222 0 16 chr1 118399034 118399097 -163794567 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 226 347 11 0 chr1 118399794 118399889 -163793775 + MLT1J LTR MaLR 103 198 -313 21 0 0 0 chr1 118402386 118402407 -163791257 + AT_rich Low_complexity Low_complexity 1 21 0 1641 184 0 43 chr1 118402440 118402766 -163790898 + AluJo SINE Alu 1 312 0 22 35 0 0 chr1 118403463 118403492 -163790172 + AT_rich Low_complexity Low_complexity 1 29 0 1025 293 16 0 chr1 118403964 118404217 -163789447 + L1M1 LINE L1 1283 1539 -6026 1473 260 75 73 chr1 118404924 118405205 -163788459 + L1ME1 LINE L1 4769 5048 -1118 573 314 77 0 chr1 118405205 118405412 -163788252 + MER58A DNA MER1_type 1 223 -1 1473 260 75 73 chr1 118405412 118405697 -163787967 + L1ME1 LINE L1 5048 5331 -835 1517 211 25 0 chr1 118405697 118405981 -163787683 - AluSx SINE Alu -21 291 1 1473 260 75 73 chr1 118405981 118406797 -163786867 + L1ME1 LINE L1 5331 6161 -5 26 30 0 0 chr1 118406888 118406921 -163786743 + AT_rich Low_complexity Low_complexity 1 33 0 352 286 22 0 chr1 118406972 118407063 -163786601 + L2 LINE L2 3180 3272 0 603 286 59 70 chr1 118407070 118407357 -163786307 - L2 LINE L2 -2330 984 701 567 293 116 63 chr1 118407646 118408205 -163785459 + L1MCc LINE L1 11 599 -5824 670 265 84 54 chr1 118408293 118408625 -163785039 + L1MCc LINE L1 880 1221 -5202 21 36 0 0 chr1 118409284 118409312 -163784352 + AT_rich Low_complexity Low_complexity 1 28 0 952 227 5 0 chr1 118409597 118409795 -163783869 - MER3 DNA MER1_type -6 203 5 27 0 0 0 chr1 118409977 118410004 -163783660 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr1 118410846 118410889 -163782775 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr1 118411555 118411576 -163782088 + AT_rich Low_complexity Low_complexity 1 21 0 312 193 0 60 chr1 118411736 118411819 -163781845 + LTR41 LTR ERVL 684 761 -12 1108 347 46 37 chr1 118411836 118412750 -163780914 - MER89-int LTR ERV1 -1705 2942 2021 265 331 67 28 chr1 118413249 118413427 -163780237 - MER89-int LTR ERV1 -3071 3730 3546 282 308 0 0 chr1 118413772 118413850 -163779814 - MER89-int LTR ERV1 -3610 3191 3114 366 259 68 0 chr1 118414009 118414041 -163779623 - L1MA10 LINE L1 -2 6332 6301 609 262 32 106 chr1 118414041 118414476 -163779188 - L1ME1 LINE L1 -26 6140 5738 2263 70 23 7 chr1 118414936 118415236 -163778428 - AluSp SINE Alu -7 306 2 884 193 97 55 chr1 118415427 118415870 -163777794 - L1MA9 LINE L1 -25 6287 5695 960 238 116 64 chr1 118416075 118416558 -163777106 + L1MCa LINE L1 158 665 -5899 26 0 0 0 chr1 118416732 118416758 -163776906 + AT_rich Low_complexity Low_complexity 1 26 0 1444 146 19 184 chr1 118416994 118417461 -163776203 + MLT1B LTR MaLR 1 390 0 2188 70 33 7 chr1 118418126 118418428 -163775236 - AluY SINE Alu -1 310 1 868 83 8 23 chr1 118418606 118418739 -163774925 - AluSc SINE Alu -5 304 174 794 237 28 42 chr1 118418739 118419022 -163774642 - LTR4 LTR ERV1 0 596 318 2133 229 59 78 chr1 118419306 118419619 -163774045 + L1MCa LINE L1 623 940 -5624 1986 121 3 3 chr1 118419619 118419916 -163773748 + AluSg SINE Alu 1 297 -13 2133 229 59 78 chr1 118419916 118420288 -163773376 + L1MCa LINE L1 940 1318 -5246 2009 123 4 0 chr1 118420288 118420565 -163773099 + AluSx SINE Alu 5 282 -30 253 0 0 0 chr1 118420565 118420593 -163773071 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 2133 229 59 78 chr1 118420593 118421023 -163772641 + L1MCa LINE L1 1318 1829 -4735 306 67 0 0 chr1 118421023 118421068 -163772596 + (CA)n Simple_repeat Simple_repeat 2 46 0 2133 229 59 78 chr1 118421068 118421202 -163772462 + L1MCa LINE L1 1829 1964 -4600 24 0 0 0 chr1 118421202 118421226 -163772438 + AT_rich Low_complexity Low_complexity 1 24 0 1510 51 10 5 chr1 118421647 118421842 -163771822 - LTR5 LTR ERVK -773 196 1 1376 157 63 52 chr1 118421972 118422261 -163771403 - AluSx SINE Alu 0 302 11 1207 189 20 86 chr1 118423050 118423352 -163770312 - MLT1B LTR MaLR -8 382 101 2075 108 24 0 chr1 118423409 118423727 -163769937 - AluSx SINE Alu 0 325 1 21 57 0 0 chr1 118424058 118424093 -163769571 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 118424279 118424308 -163769356 + AT_rich Low_complexity Low_complexity 1 29 0 1807 145 3 11 chr1 118424425 118424707 -163768957 + AluSq SINE Alu 1 280 -33 324 0 0 0 chr1 118424707 118424743 -163768921 + (CA)n Simple_repeat Simple_repeat 1 36 0 1398 109 0 5 chr1 118424841 118425033 -163768631 - AluSp SINE Alu -4 309 119 333 300 14 0 chr1 118425065 118425205 -163768459 - L1ME1 LINE L1 -222 5944 5803 736 294 17 4 chr1 118425224 118425485 -163768179 + L1ME3A LINE L1 5401 5668 -496 229 247 26 0 chr1 118425490 118425567 -163768097 + (TA)n Simple_repeat Simple_repeat 1 79 0 22 0 0 0 chr1 118425639 118425661 -163768003 + AT_rich Low_complexity Low_complexity 1 22 0 301 259 141 32 chr1 118425664 118425849 -163767815 - L1MEd LINE L1 -5218 901 697 189 0 0 0 chr1 118425995 118426016 -163767648 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 360 0 0 0 chr1 118426015 118426055 -163767609 + (GA)n Simple_repeat Simple_repeat 2 41 0 371 296 85 40 chr1 118426067 118426107 -163767557 - L1MEd LINE L1 -5626 493 456 242 29 29 0 chr1 118426107 118426142 -163767522 + (TTA)n Simple_repeat Simple_repeat 1 36 0 371 296 85 40 chr1 118426142 118426300 -163767364 - L1MEd LINE L1 -5663 456 286 269 346 0 0 chr1 118426484 118426562 -163767102 + MLT1I LTR MaLR 98 175 -234 301 222 12 49 chr1 118427547 118427628 -163766036 + MER5A DNA MER1_type 35 112 -77 316 256 96 97 chr1 118428610 118428911 -163764753 + L1MEd LINE L1 938 1238 -4891 3701 154 24 3 chr1 118428911 118429542 -163764122 + LTR9B LTR ERV1 1 644 0 316 256 96 97 chr1 118429542 118429628 -163764036 + L1MEd LINE L1 1238 1323 -4806 2100 112 10 13 chr1 118429628 118429931 -163763733 + AluSc SINE Alu 1 302 -7 316 256 96 97 chr1 118429931 118430244 -163763420 + L1MEd LINE L1 1323 1569 -4560 300 282 45 18 chr1 118430253 118430363 -163763301 + L1MEd LINE L1 2255 2367 -3762 489 272 126 38 chr1 118430367 118430628 -163763036 - Charlie7 DNA MER1_type -2162 450 167 713 266 99 21 chr1 118430696 118430978 -163762686 + L1ME3A LINE L1 5857 6160 -10 27 29 0 0 chr1 118431257 118431291 -163762373 + AT_rich Low_complexity Low_complexity 1 34 0 649 213 21 7 chr1 118431432 118431573 -163762091 + LTR48B LTR ERV1 502 644 0 3370 214 46 80 chr1 118431575 118432510 -163761154 + LTR48B-int LTR ERV1 1 903 -5428 225 198 12 37 chr1 118432639 118432720 -163760944 + T-rich Low_complexity Low_complexity 3 81 0 1772 132 8 0 chr1 118433144 118433410 -163760254 - MLT2A2 LTR ERVL -185 268 1 1033 255 18 27 chr1 118433434 118433767 -163759897 - MLT1A1-int LTR MaLR -1405 330 1 1554 230 23 11 chr1 118433771 118434119 -163759545 - MLT1A1 LTR MaLR -4 361 10 225 0 0 0 chr1 118434454 118434479 -163759185 + (TA)n Simple_repeat Simple_repeat 2 26 0 2305 193 90 0 chr1 118434480 118434989 -163758675 - L1MB3 LINE L1 -27 6392 5838 567 187 0 9 chr1 118435023 118435130 -163758534 - AluSq/x SINE Alu -207 106 1 4277 272 58 14 chr1 118435130 118436185 -163757479 - L1MB3 LINE L1 -779 5603 4450 354 45 0 0 chr1 118436185 118436229 -163757435 + (TG)n Simple_repeat Simple_repeat 1 44 0 4277 272 58 14 chr1 118436229 118436787 -163756877 - L1MB3 LINE L1 -1932 4450 3918 25 31 0 0 chr1 118436788 118436820 -163756844 + AT_rich Low_complexity Low_complexity 1 32 0 4755 173 39 32 chr1 118436820 118437112 -163756552 - L1PB2 LINE L1 -3 6148 5860 1872 192 87 12 chr1 118437112 118437539 -163756125 - LOR1b LTR ERV1 -2 459 1 4755 173 39 32 chr1 118437539 118438258 -163755406 - L1PB2 LINE L1 -291 5860 5115 279 54 0 0 chr1 118438258 118438295 -163755369 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 4755 173 39 32 chr1 118438295 118438872 -163754792 - L1PB2 LINE L1 -1036 5115 4544 5965 225 70 13 chr1 118438883 118439811 -163753853 - L1MB3 LINE L1 -4548 1836 778 215 59 0 29 chr1 118439811 118439845 -163753819 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5965 225 70 13 chr1 118439845 118440507 -163753157 - L1MB3 LINE L1 -5606 778 155 282 335 52 90 chr1 118440519 118440757 -163752907 + L2 LINE L2 2956 3179 -134 2358 68 0 3 chr1 118440757 118441049 -163752615 - AluY SINE Alu -20 291 1 282 335 52 90 chr1 118441049 118441153 -163752511 + L2 LINE L2 3179 3285 -28 202 405 27 0 chr1 118441673 118441784 -163751880 + L2 LINE L2 2925 3038 -234 306 231 28 9 chr1 118441819 118441927 -163751737 + (TA)n Simple_repeat Simple_repeat 2 111 0 192 344 208 0 chr1 118442197 118442293 -163751371 - MIR SINE MIR -87 175 60 870 254 62 32 chr1 118442297 118442667 -163750997 + LTR52 LTR ERVL 1 381 -40 32 43 0 0 chr1 118442832 118442878 -163750786 + AT_rich Low_complexity Low_complexity 1 46 0 25 83 0 0 chr1 118443164 118443224 -163750440 + AT_rich Low_complexity Low_complexity 1 60 0 2030 127 20 0 chr1 118444052 118444344 -163749320 + AluSg SINE Alu 1 298 -12 3005 182 81 12 chr1 118444701 118445365 -163748299 - MER67C LTR ERV1 0 710 1 2471 86 39 14 chr1 118445567 118445929 -163747735 - THE1C LTR MaLR 0 375 5 10118 130 27 3 chr1 118445933 118447475 -163746189 - THE1C-int LTR MaLR 0 1580 2 1688 170 44 13 chr1 118447506 118447824 -163745840 - THE1C LTR MaLR -46 329 2 2291 193 17 15 chr1 118448786 118449252 -163744412 - MLT1C LTR MaLR 0 467 1 1550 225 10 0 chr1 118449314 118449621 -163744043 - AluJb SINE Alu 0 312 3 3932 183 54 47 chr1 118451882 118452831 -163740833 + L1MA9 LINE L1 5358 6312 0 1584 81 0 0 chr1 118453574 118453785 -163739879 - L1PA7 LINE L1 -6 6148 5938 3078 40 11 0 chr1 118453786 118454160 -163739504 - L1PA4 LINE L1 -1 6154 5777 26 50 0 0 chr1 118456708 118456748 -163736916 + AT_rich Low_complexity Low_complexity 1 40 0 2391 77 0 0 chr1 118457944 118458254 -163735410 - AluY SINE Alu -1 310 1 423 0 0 0 chr1 118458453 118458500 -163735164 + (TA)n Simple_repeat Simple_repeat 1 47 0 23 33 0 0 chr1 118459334 118459364 -163734300 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr1 118459425 118459471 -163734193 + AT_rich Low_complexity Low_complexity 1 46 0 532 175 39 10 chr1 118459919 118460022 -163733642 + LTR49-int LTR ERV1 734 839 -5492 270 202 110 46 chr1 118460217 118460326 -163733338 + LTR49-int LTR ERV1 1084 1199 -5132 261 333 0 0 chr1 118460342 118460408 -163733256 + tRNA-Glu-GAG tRNA tRNA 10 75 0 383 154 11 11 chr1 118460463 118460554 -163733110 + LTR48-int LTR ERV1 1290 1380 -4951 17038 195 52 67 chr1 118460763 118465625 -163728039 + LTR48-int LTR ERV1 1377 6167 -164 1665 203 130 37 chr1 118465728 118466220 -163727444 - MER101B LTR ERV1 -32 538 1 404 249 230 28 chr1 118466255 118466472 -163727192 + LTR48 LTR ERV1 1 261 -526 3204 183 20 7 chr1 118466529 118467136 -163726528 - MER41B LTR ERV1 0 635 21 1494 168 7 54 chr1 118467136 118467434 -163726230 + AluJb SINE Alu 13 296 -16 898 209 92 22 chr1 118467444 118467716 -163725948 + LTR48B LTR ERV1 235 563 -74 22 35 0 0 chr1 118469016 118469045 -163724619 + AT_rich Low_complexity Low_complexity 1 29 0 1735 172 13 19 chr1 118469148 118469462 -163724202 + AluSx SINE Alu 1 312 0 43 68 0 10 chr1 118469729 118469808 -163723856 + AT_rich Low_complexity Low_complexity 1 80 -22 1537 107 0 0 chr1 118469808 118470014 -163723650 - AluY SINE Alu -24 287 82 43 68 0 10 chr1 118470014 118470037 -163723627 + AT_rich Low_complexity Low_complexity 80 102 0 216 351 53 0 chr1 118470078 118470172 -163723492 - L2 LINE L2 -7 3306 3208 28 0 0 0 chr1 118471284 118471312 -163722352 + AT_rich Low_complexity Low_complexity 1 28 0 491 246 85 23 chr1 118471366 118471496 -163722168 + AluJb SINE Alu 85 222 -90 251 28 28 0 chr1 118471532 118471568 -163722096 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 443 133 44 35 chr1 118472174 118472287 -163721377 - L1MA9 LINE L1 0 6312 6199 1461 301 38 43 chr1 118472355 118473141 -163720523 - L1MC4a LINE L1 -1546 6262 5481 23 78 0 0 chr1 118473143 118473194 -163720470 + AT_rich Low_complexity Low_complexity 1 51 0 1168 302 146 37 chr1 118473696 118474236 -163719428 - MLT2E LTR ERVL 0 628 30 487 298 138 21 chr1 118474269 118475117 -163718547 + L1ME3A LINE L1 4039 4985 -1161 1161 229 89 50 chr1 118475129 118475574 -163718090 + MER31A LTR ERV1 2 543 0 383 287 60 67 chr1 118475758 118476040 -163717624 + L1ME3A LINE L1 5106 5385 -761 2305 81 3 3 chr1 118476300 118476598 -163717066 + AluY SINE Alu 3 300 -11 447 276 131 5 chr1 118476992 118477206 -163716458 + L1ME3A LINE L1 5625 5865 -305 417 288 29 75 chr1 118477725 118478003 -163715661 - L1ME1 LINE L1 -4 6162 5898 873 223 3 93 chr1 118478005 118478296 -163715368 - AluJb SINE Alu -47 265 1 1582 228 42 25 chr1 118478335 118478769 -163714895 - L1ME1 LINE L1 -306 5860 5420 28 71 0 0 chr1 118478838 118478894 -163714770 + AT_rich Low_complexity Low_complexity 1 56 0 785 240 57 6 chr1 118480032 118480365 -163713299 + L1 LINE L1 3150 3499 -2647 2336 66 3 3 chr1 118480369 118480670 -163712994 + AluY SINE Alu 1 301 -10 36 0 0 0 chr1 118480670 118480706 -163712958 + AT_rich Low_complexity Low_complexity 1 36 0 6113 204 46 33 chr1 118480725 118482535 -163711129 + L1PA8A LINE L1 3869 5753 -378 481 169 53 57 chr1 118482553 118482727 -163710937 + L1MA9 LINE L1 6119 6276 -36 24 77 0 0 chr1 118483491 118483543 -163710121 + AT_rich Low_complexity Low_complexity 1 52 0 264 313 117 42 chr1 118486291 118486531 -163707133 - MIR SINE MIR -1 261 4 427 259 23 33 chr1 118486645 118486775 -163706889 + L1ME2 LINE L1 6038 6328 -6 24 0 0 0 chr1 118488299 118488323 -163705341 + AT_rich Low_complexity Low_complexity 1 24 0 1369 236 43 23 chr1 118489939 118490376 -163703288 + LTR37B LTR ERV1 23 468 0 212 246 0 62 chr1 118491408 118491473 -163702191 - MIR SINE MIR -44 218 158 21 0 0 0 chr1 118492206 118492227 -163701437 + AT_rich Low_complexity Low_complexity 1 21 0 282 294 171 18 chr1 118493130 118493300 -163700364 + MIR SINE MIR 66 261 -1 2406 59 0 16 chr1 118494463 118494767 -163698897 - AluY SINE Alu -12 299 1 603 246 104 15 chr1 118494812 118495094 -163698570 - L1M2 LINE L1 -562 5592 5357 4731 242 15 31 chr1 118495114 118496285 -163697379 - ERVL LTR ERVL -2534 3230 2078 324 257 10 0 chr1 118496444 118496545 -163697119 - MLT2C2 LTR ERVL -360 104 3 1361 308 90 74 chr1 118496970 118498238 -163695426 - MLT-int LTR MaLR -107 1628 341 335 127 0 0 chr1 118498240 118498295 -163695369 - MLT2A2 LTR ERVL 0 444 390 207 0 0 0 chr1 118498295 118498318 -163695346 + (TTATA)n Simple_repeat Simple_repeat 5 27 0 2805 112 12 35 chr1 118498338 118498766 -163694898 - MLT2A2 LTR ERVL -35 418 1 11220 98 5 12 chr1 118498766 118500313 -163693351 - HERVL-A2 LTR ERVL 0 5654 4119 261 0 0 0 chr1 118500669 118500698 -163692966 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr1 118501532 118501562 -163692102 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr1 118501623 118501669 -163691995 + AT_rich Low_complexity Low_complexity 1 46 0 227 329 79 14 chr1 118502603 118502743 -163690921 - L3 LINE CR1 -196 1381 1233 39 50 0 0 chr1 118504770 118504830 -163688834 + AT_rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr1 118504853 118504885 -163688779 + (TG)n Simple_repeat Simple_repeat 1 32 0 198 209 0 0 chr1 118505534 118505577 -163688087 + (TA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr1 118505931 118505962 -163687702 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr1 118506456 118506479 -163687185 + (TG)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr1 118507269 118507292 -163686372 + (TG)n Simple_repeat Simple_repeat 1 23 0 212 307 50 50 chr1 118507448 118507588 -163686076 + L2 LINE L2 2110 2249 -1065 313 316 120 0 chr1 118507615 118507748 -163685916 - MIR SINE MIR 0 262 114 457 269 162 57 chr1 118508277 118508574 -163685090 - MLT1H LTR MaLR 0 549 222 25 0 0 0 chr1 118508867 118508892 -163684772 + AT_rich Low_complexity Low_complexity 1 25 0 1844 177 76 9 chr1 118508895 118509314 -163684350 - L1MA8 LINE L1 -21 6270 5824 2061 216 29 6 chr1 118509316 118510098 -163683566 - L1MA8 LINE L1 -644 5647 4848 1470 148 105 15 chr1 118510100 118510425 -163683239 + L1MA8 LINE L1 5879 6232 -59 685 203 95 0 chr1 118510478 118510626 -163683038 + AluJo SINE Alu 118 279 -33 180 0 0 0 chr1 118510629 118510649 -163683015 + (TA)n Simple_repeat Simple_repeat 2 21 0 205 186 29 0 chr1 118510717 118510787 -163682877 + (TA)n Simple_repeat Simple_repeat 2 73 0 3236 204 35 8 chr1 118510865 118511601 -163682063 - L1MA8 LINE L1 -1287 4859 4104 1799 253 89 6 chr1 118511601 118512233 -163681431 + L1MA8 LINE L1 3398 4081 -2065 21 0 0 0 chr1 118512233 118512254 -163681410 + AT_rich Low_complexity Low_complexity 1 21 0 59 53 0 0 chr1 118513867 118513961 -163679703 + AT_rich Low_complexity Low_complexity 1 94 0 1472 255 60 21 chr1 118514815 118515250 -163678414 - MLT1D LTR MaLR 0 505 54 2061 143 0 0 chr1 118515262 118515570 -163678094 - AluSx SINE Alu -4 308 1 247 176 0 39 chr1 118515739 118515790 -163677874 - MLT2C2 LTR ERVL 0 464 416 6119 144 19 10 chr1 118515809 118516810 -163676854 - HSMAR2 DNA Mariner -3 1299 290 346 210 35 42 chr1 118517032 118517175 -163676489 + AluY SINE Alu 140 281 -20 362 161 5 104 chr1 118518398 118518591 -163675073 + A-rich Low_complexity Low_complexity 4 177 0 294 171 59 47 chr1 118518523 118518693 -163674971 + (CACAA)n Simple_repeat Simple_repeat 4 175 0 * 1463 221 26 73 chr1 118518833 118519173 -163674491 + L1MA9 LINE L1 5428 5742 -570 1968 114 19 13 chr1 118519173 118519306 -163674358 + AluSg SINE Alu 1 132 -178 2188 92 0 13 chr1 118519306 118519611 -163674053 + AluY SINE Alu 1 301 -10 1968 114 19 13 chr1 118519611 118519785 -163673879 + AluSg SINE Alu 132 310 0 1463 221 26 73 chr1 118519785 118519909 -163673755 + L1MA9 LINE L1 5742 5870 -442 1326 324 69 43 chr1 118520010 118521180 -163672484 - L1M3a LINE L1 -4914 1041 11 22 0 0 0 chr1 118521350 118521372 -163672292 + AT_rich Low_complexity Low_complexity 1 22 0 403 59 0 0 chr1 118521634 118521685 -163671979 - Alu SINE Alu -234 76 26 5028 142 20 21 chr1 118522283 118523362 -163670302 + L1PA15 LINE L1 5083 6159 -6 317 316 25 0 chr1 118523367 118523446 -163670218 + MER5A DNA MER1_type 61 141 -48 964 236 33 32 chr1 118523456 118523840 -163669824 - L1MDa LINE L1 -3893 2647 2307 21 0 0 0 chr1 118524023 118524044 -163669620 + AT_rich Low_complexity Low_complexity 1 21 0 336 273 36 9 chr1 118524044 118524154 -163669510 - L1MC/D LINE L1 -616 5743 5631 * 2162 149 45 108 chr1 118524147 118524202 -163669462 + L1PA16 LINE L1 5683 5740 -426 1888 128 0 43 chr1 118524202 118524507 -163669157 + AluSx SINE Alu 1 292 -20 2162 149 45 108 chr1 118524507 118524962 -163668702 + L1PA16 LINE L1 5740 6161 -5 3063 221 65 55 chr1 118525003 118525435 -163668229 - L1MD1 LINE L1 -5 6237 5811 2269 68 3 3 chr1 118525435 118525730 -163667934 - AluY SINE Alu -16 295 1 3063 221 65 55 chr1 118525730 118526446 -163667218 - L1MD1 LINE L1 -431 5811 5076 26 0 0 0 chr1 118526496 118526522 -163667142 + AT_rich Low_complexity Low_complexity 1 26 0 2101 195 52 20 chr1 118526799 118527297 -163666367 + L1MA9 LINE L1 5799 6312 0 23 0 0 0 chr1 118527820 118527843 -163665821 + AT_rich Low_complexity Low_complexity 1 23 0 2114 107 10 3 chr1 118528012 118528310 -163665354 - AluSq SINE Alu -13 300 1 240 349 20 14 chr1 118529696 118529842 -163663822 + L1MCa LINE L1 36 182 -6244 322 289 24 0 chr1 118529977 118530060 -163663604 + L1MCa LINE L1 352 436 -5990 1354 228 8 0 chr1 118530205 118530473 -163663191 - MSTC LTR MaLR -27 401 132 412 191 0 11 chr1 118530867 118530956 -163662708 + L1M4 LINE L1 4958 5045 -1101 30592 32 0 2 chr1 118530965 118535463 -163658201 + L1PA3 LINE L1 1662 6152 -3 3396 223 84 11 chr1 118535612 118536937 -163656727 - L1P2 LINE L1 -473 5681 4253 1267 240 28 64 chr1 118536938 118537438 -163656226 - L1M4 LINE L1 -1714 4432 3951 1036 278 76 27 chr1 118537488 118538118 -163655546 - L1M4 LINE L1 -1719 4427 3767 713 319 66 7 chr1 118538117 118538418 -163655246 - L1MEc LINE L1 -6036 360 42 * 301 289 48 21 chr1 118538509 118538696 -163654968 - HAL1 LINE L1 -886 1621 1430 1545 268 80 15 chr1 118539224 118539701 -163653963 + MLT2B1 LTR ERVL 1 508 -12 41 58 0 0 chr1 118539826 118539895 -163653769 + AT_rich Low_complexity Low_complexity 1 69 0 24 0 0 0 chr1 118539927 118539951 -163653713 + AT_rich Low_complexity Low_complexity 1 24 0 180 77 0 0 chr1 118540035 118540061 -163653603 + (TG)n Simple_repeat Simple_repeat 1 26 0 2386 86 0 0 chr1 118541804 118542106 -163651558 - AluY SINE Alu -9 302 1 22 0 0 0 chr1 118542156 118542178 -163651486 + AT_rich Low_complexity Low_complexity 1 22 0 1542 221 33 18 chr1 118544134 118544465 -163649199 - MER7A DNA MER2_type -12 334 1 28 61 0 0 chr1 118544469 118544518 -163649146 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr1 118544872 118544893 -163648771 + AT_rich Low_complexity Low_complexity 1 21 0 1226 115 0 0 chr1 118546055 118546220 -163647444 + AluSp SINE Alu 55 219 -94 1401 344 128 14 chr1 118546357 118547307 -163646357 + L2 LINE L2 2245 3313 0 186 239 65 43 chr1 118547346 118547438 -163646226 + L2 LINE L2 1919 2012 -1302 260 350 19 0 chr1 118547842 118547945 -163645719 + L2 LINE L2 2800 2904 -410 2343 97 0 0 chr1 118548213 118548521 -163645143 + AluSp SINE Alu 1 308 -5 1111 205 31 66 chr1 118548522 118548839 -163644825 + L1PA15 LINE L1 5858 6163 -2 308 193 30 12 chr1 118548840 118549006 -163644658 + (TA)n Simple_repeat Simple_repeat 1 169 0 517 184 30 0 chr1 118549046 118549214 -163644450 + (TA)n Simple_repeat Simple_repeat 2 174 0 249 139 28 14 chr1 118549225 118549297 -163644367 + (TA)n Simple_repeat Simple_repeat 1 73 0 1131 241 37 56 chr1 118549365 118549443 -163644221 - MER77 LTR ERV1 -4 601 523 2824 10 0 0 chr1 118549443 118549754 -163643910 - AluYa5 SINE Alu 0 311 1 1131 241 37 56 chr1 118549754 118549991 -163643673 - MER77 LTR ERV1 -82 523 292 1012 115 0 20 chr1 118549991 118550139 -163643525 + THE1C LTR MaLR 1 145 -230 8766 153 44 20 chr1 118550139 118551653 -163642011 + THE1C-int LTR MaLR 25 1574 -6 2321 136 8 13 chr1 118551659 118552034 -163641630 + THE1C LTR MaLR 1 373 -2 2705 206 68 98 chr1 118552320 118552625 -163641039 + Tigger6a DNA MER2_type 126 439 -1158 3856 100 5 69 chr1 118552625 118553266 -163640398 - MER4A LTR ERV1 0 600 1 2705 206 68 98 chr1 118553266 118553948 -163639716 + Tigger6a DNA MER2_type 439 1083 0 846 357 74 24 chr1 118554378 118554930 -163638734 - MLT1E LTR MaLR 0 593 14 1946 113 38 0 chr1 118556905 118557197 -163636467 + AluSq SINE Alu 1 303 -10 35 0 0 0 chr1 118557461 118557496 -163636168 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr1 118558130 118558166 -163635498 + AT_rich Low_complexity Low_complexity 1 36 0 2620 102 6 0 chr1 118558514 118558876 -163634788 + THE1B LTR MaLR 1 364 0 235 295 0 0 chr1 118558877 118558955 -163634709 + (TA)n Simple_repeat Simple_repeat 1 78 0 2148 128 0 0 chr1 118558967 118559263 -163634401 + AluSg SINE Alu 1 296 -14 369 200 0 0 chr1 118559365 118559430 -163634234 - MER92C LTR ERV1 -6 548 484 344 296 24 65 chr1 118559512 118559681 -163633983 - MER92C LTR ERV1 -392 162 1 1820 146 20 0 chr1 118560641 118560935 -163632729 - AluSx SINE Alu -12 300 1 220 330 75 38 chr1 118561569 118561675 -163631989 - L2 LINE L2 0 3272 3163 463 370 120 34 chr1 118561947 118562991 -163630673 - L2 LINE L2 -412 2902 1769 21 100 0 0 chr1 118563879 118563949 -163629715 + AT_rich Low_complexity Low_complexity 1 70 0 372 328 64 24 chr1 118564045 118564420 -163629244 - L1ME LINE L1 -399 5763 5374 1757 105 0 0 chr1 118564871 118565099 -163628565 + AluSg/x SINE Alu 66 293 -19 218 398 28 9 chr1 118565600 118565708 -163627956 + L2 LINE L2 3162 3271 -1 49 43 0 0 chr1 118565728 118565798 -163627866 + AT_rich Low_complexity Low_complexity 1 70 0 35 98 0 0 chr1 118567072 118567184 -163626480 + AT_rich Low_complexity Low_complexity 1 112 0 1907 90 4 0 chr1 118568059 118568315 -163625349 - AluY SINE Alu -18 293 37 334 331 116 51 chr1 118568532 118568885 -163624779 - L1M2 LINE L1 -5577 1272 897 1133 217 52 132 chr1 118568942 118569600 -163624064 - L1MDa LINE L1 -4439 2101 1497 1887 190 0 8 chr1 118569625 118569993 -163623671 + MER47A DNA MER2_type 2 366 0 22 88 0 0 chr1 118570079 118570136 -163623528 + AT_rich Low_complexity Low_complexity 1 57 0 26 50 0 0 chr1 118570181 118570221 -163623443 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr1 118570280 118570304 -163623360 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr1 118570382 118570416 -163623248 + AT_rich Low_complexity Low_complexity 1 34 0 240 376 98 11 chr1 118570626 118570964 -163622700 + L2 LINE L2 2688 3106 -207 1159 158 70 4 chr1 118571837 118572096 -163621568 - L1MA9 LINE L1 -2 6310 6035 273 148 0 19 chr1 118572361 118572415 -163621249 - L1MA9 LINE L1 0 6312 6260 685 267 17 33 chr1 118572433 118572769 -163620895 - L1 LINE L1 -3684 2644 2315 1214 269 136 31 chr1 118572812 118573933 -163619731 - L1 LINE L1 -3981 2347 1095 29 87 0 10 chr1 118574033 118574075 -163619589 + AT_rich Low_complexity Low_complexity 1 42 -60 1994 17 0 0 chr1 118574075 118574310 -163619354 - L1PA3 LINE L1 0 6155 5921 29 87 0 10 chr1 118574310 118574370 -163619294 + AT_rich Low_complexity Low_complexity 42 102 0 435 303 63 25 chr1 118574619 118574828 -163618836 - MLT1J2 LTR MaLR -165 281 59 402 269 150 6 chr1 118575084 118575244 -163618420 - MIR SINE MIR -17 245 63 240 287 85 11 chr1 118575319 118575413 -163618251 + MIR SINE MIR 89 189 -73 1170 61 0 0 chr1 118575434 118575581 -163618083 + AluSg/x SINE Alu 165 311 -1 209 385 46 0 chr1 118576551 118576660 -163617004 + L2 LINE L2 3200 3313 0 477 0 0 0 chr1 118576793 118576846 -163616818 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 1761 138 3 7 chr1 118576848 118577130 -163616534 - AluSx SINE Alu -31 281 1 256 308 58 0 chr1 118578587 118578691 -163614973 + MIR SINE MIR 97 206 -56 28 29 0 0 chr1 118578858 118578893 -163614771 + AT_rich Low_complexity Low_complexity 1 35 0 219 204 0 0 chr1 118579463 118579512 -163614152 + (CA)n Simple_repeat Simple_repeat 2 50 0 355 209 11 88 chr1 118579515 118579606 -163614058 + MER5A DNA MER1_type 99 182 -7 340 316 31 22 chr1 118579627 118579852 -163613812 - L1MCc LINE L1 -4550 2393 2167 234 191 0 0 chr1 118579957 118580004 -163613660 + (TA)n Simple_repeat Simple_repeat 1 47 0 26 0 0 0 chr1 118580033 118580059 -163613605 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr1 118580428 118580456 -163613208 + AT_rich Low_complexity Low_complexity 1 28 0 4049 124 21 127 chr1 118580475 118582014 -163611650 - pTR5 LTR ERV1 0 2606 1524 858 211 64 25 chr1 118582181 118582385 -163611279 - LTR38B-int LTR ERV1 -2725 1560 1349 361 270 78 122 chr1 118582606 118582976 -163610688 - LTR38B-int LTR ERV1 -1309 477 124 2941 153 54 23 chr1 118583059 118583633 -163610031 - LTR38B LTR ERV1 -18 592 1 650 336 54 18 chr1 118583700 118583977 -163609687 + LTR16A LTR ERVL 164 450 0 219 301 72 65 chr1 118584161 118584314 -163609350 + L2 LINE L2 3128 3281 -32 492 310 40 50 chr1 118584489 118584889 -163608775 + L1ME3A LINE L1 5521 5916 -248 2031 102 7 3 chr1 118584905 118585190 -163608474 + AluY SINE Alu 1 286 -25 183 80 0 0 chr1 118585190 118585215 -163608449 + (TA)n Simple_repeat Simple_repeat 2 26 0 881 250 76 17 chr1 118585251 118585487 -163608177 - MER76 LTR ERV -438 250 1 777 262 25 94 chr1 118585501 118586168 -163607496 - L1MCc LINE L1 -4903 1520 1210 227 180 37 50 chr1 118586718 118586879 -163606785 + (CACAC)n Simple_repeat Simple_repeat 3 161 0 2512 121 8 8 chr1 118586979 118587367 -163606297 - HERVL LTR ERVL -4866 788 401 10047 172 24 15 chr1 118637599 118640740 -163552924 + L1MA1 LINE L1 3133 6302 0 272 200 88 0 chr1 118640760 118640840 -163552824 + L1ME LINE L1 5346 5432 -730 1514 246 22 80 chr1 118640885 118641449 -163552215 + MLT1F LTR MaLR 1 577 -13 343 309 24 8 chr1 118641449 118641575 -163552089 + L1ME LINE L1 5509 5636 -534 328 301 23 38 chr1 118641596 118641729 -163551935 + L1ME LINE L1 5684 5814 -348 299 259 54 54 chr1 118642166 118642313 -163551351 - MIR SINE MIR -2 260 114 193 256 0 0 chr1 118642457 118642500 -163551164 - MIR SINE MIR -214 48 6 21 36 0 0 chr1 118643355 118643383 -163550281 + AT_rich Low_complexity Low_complexity 1 28 0 340 91 30 0 chr1 118643570 118643636 -163550028 + (TA)n Simple_repeat Simple_repeat 2 69 0 1587 93 0 5 chr1 118643688 118643902 -163549762 - AluSg/x SINE Alu -14 296 84 24 32 0 0 chr1 118643964 118643995 -163549669 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr1 118644800 118644828 -163548836 + AT_rich Low_complexity Low_complexity 1 28 0 2473 193 43 24 chr1 118646267 118646410 -163547254 + L1MC3 LINE L1 5709 5848 -1937 1878 121 52 7 chr1 118646410 118646699 -163546965 + AluSx SINE Alu 1 302 -10 2473 193 43 24 chr1 118646699 118647140 -163546524 + L1MC3 LINE L1 5848 7772 -13 24 32 0 0 chr1 118648526 118648557 -163545107 + AT_rich Low_complexity Low_complexity 1 31 0 535 338 26 13 chr1 118649689 118649920 -163543744 - MIR SINE MIR -26 236 3 30 93 0 0 chr1 118650502 118650588 -163543076 + AT_rich Low_complexity Low_complexity 1 86 0 919 45 0 0 chr1 118650777 118650887 -163542777 + L1P LINE L1 3778 3887 -2259 228 215 15 15 chr1 118650929 118650994 -163542670 + T-rich Low_complexity Low_complexity 1 65 0 21 82 0 0 chr1 118651002 118651051 -163542613 + AT_rich Low_complexity Low_complexity 1 49 0 298 350 28 44 chr1 118651426 118651606 -163542058 + L3 LINE CR1 659 835 -742 1213 42 12 0 chr1 118651824 118651991 -163541673 - L1P LINE L1 -727 5428 5260 5718 12 0 0 chr1 118651991 118652663 -163541001 + L1PA2 LINE L1 5498 6175 0 187 342 95 58 chr1 118653963 118654459 -163539205 - L2 LINE L2 -831 2483 1948 3051 22 3 0 chr1 118654459 118654817 -163538847 + L1PA4 LINE L1 5794 6152 -3 187 342 95 58 chr1 118654817 118655075 -163538589 - L2 LINE L2 -1366 1948 1701 23 78 0 0 chr1 118655177 118655228 -163538436 + AT_rich Low_complexity Low_complexity 1 51 0 6553 206 31 11 chr1 118655332 118656651 -163537013 + ERVL LTR ERVL 3823 5168 -596 1348 208 125 6 chr1 118656840 118657167 -163536497 - MER47A DNA MER2_type 0 366 1 29 60 0 0 chr1 118658388 118658438 -163535226 + AT_rich Low_complexity Low_complexity 1 50 0 291 93 0 0 chr1 118659216 118659259 -163534405 + (CATA)n Simple_repeat Simple_repeat 2 44 0 390 115 0 0 chr1 118660416 118660477 -163533187 + (TG)n Simple_repeat Simple_repeat 2 62 0 219 389 66 25 chr1 118661207 118661405 -163532259 - L2 LINE L2 -431 2883 2678 2480 181 52 52 chr1 118661410 118662011 -163531653 + MER7C DNA MER2_type 2 602 0 397 350 104 45 chr1 118662201 118662759 -163530905 - L2 LINE L2 -1515 1799 1209 598 224 11 34 chr1 118665256 118665435 -163528229 + L1ME3A LINE L1 5744 5918 -252 22 35 0 0 chr1 118665443 118665472 -163528192 + AT_rich Low_complexity Low_complexity 1 29 0 4555 177 48 26 chr1 118665514 118666267 -163527397 - L1PA16 LINE L1 -9 6157 5422 793 450 132 4 chr1 118666267 118666525 -163527139 - AluSc SINE Alu -8 291 1 4555 177 48 26 chr1 118666525 118666677 -163526987 - L1PA16 LINE L1 -744 5422 5275 1523 208 19 24 chr1 118666677 118667052 -163526612 - THE1C LTR MaLR 0 375 3 4555 177 48 26 chr1 118667052 118667634 -163526030 - L1PA16 LINE L1 -891 5275 4645 23 33 0 0 chr1 118667805 118667835 -163525829 + AT_rich Low_complexity Low_complexity 1 30 0 454 43 29 0 chr1 118667966 118668035 -163525629 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 24 53 0 0 chr1 118668326 118668364 -163525300 + AT_rich Low_complexity Low_complexity 1 38 0 274 328 57 33 chr1 118669070 118669192 -163524472 - MER5B DNA MER1_type -51 127 3 325 312 83 0 chr1 118670031 118670140 -163523524 - MER5B DNA MER1_type -2 176 59 24 0 0 0 chr1 118671398 118671422 -163522242 + AT_rich Low_complexity Low_complexity 1 24 0 2821 192 8 5 chr1 118671425 118672024 -163521640 + L1MA1 LINE L1 4710 5310 -847 487 158 0 0 chr1 118672025 118672107 -163521557 - L1P LINE L1 -1123 5023 4942 * 6268 119 27 5 chr1 118672104 118673076 -163520588 + L1MA1 LINE L1 5310 6302 0 23 33 0 0 chr1 118673076 118673106 -163520558 + AT_rich Low_complexity Low_complexity 1 30 0 688 324 78 17 chr1 118673380 118673726 -163519938 - L2 LINE L2 -488 2826 2460 332 328 88 21 chr1 118674183 118674375 -163519289 + L1ME1 LINE L1 1399 1603 -4823 1552 257 65 30 chr1 118674379 118675087 -163518577 + L1ME1 LINE L1 1775 2507 -4100 479 196 57 57 chr1 118675094 118675252 -163518412 + L1ME1 LINE L1 5205 5362 -1064 780 233 90 29 chr1 118675324 118675629 -163518035 + L1ME1 LINE L1 5509 5832 -614 528 283 43 62 chr1 118675632 118675936 -163517728 + L1ME1 LINE L1 6143 6440 -6 21 0 0 0 chr1 118676269 118676290 -163517374 + AT_rich Low_complexity Low_complexity 1 21 0 274 213 13 40 chr1 118677758 118677833 -163515831 - MER52C LTR ERV1 0 1278 1206 * 5683 182 127 60 chr1 118677826 118679317 -163514347 - MER52A LTR ERV1 -164 1591 1 2507 56 0 3 chr1 118679822 118680128 -163513536 - AluY SINE Alu -6 305 1 25 65 0 0 chr1 118680413 118680459 -163513205 + AT_rich Low_complexity Low_complexity 1 46 0 1041 258 72 33 chr1 118680465 118680856 -163512808 - L1MC4a LINE L1 -14 7794 7389 439 129 54 0 chr1 118681036 118681129 -163512535 - L1PA16 LINE L1 -6 6160 6063 876 235 5 33 chr1 118681129 118681342 -163512322 - AluJo SINE Alu -101 211 5 24 32 0 0 chr1 118681572 118681603 -163512061 + AT_rich Low_complexity Low_complexity 1 31 0 1807 180 73 0 chr1 118682478 118682794 -163510870 + MER1B DNA MER1_type 1 339 0 25 31 0 0 chr1 118682996 118683028 -163510636 + AT_rich Low_complexity Low_complexity 1 32 0 235 346 16 16 chr1 118683184 118683311 -163510353 + MLT1G1 LTR MaLR 230 356 -239 34 42 0 0 chr1 118683775 118683823 -163509841 + AT_rich Low_complexity Low_complexity 1 48 0 306 324 16 49 chr1 118685221 118685406 -163508258 + L1MEc LINE L1 299 477 -5919 249 202 45 22 chr1 118685813 118685902 -163507762 + (TA)n Simple_repeat Simple_repeat 2 92 0 426 282 178 0 chr1 118685904 118686106 -163507558 - L1M4 LINE L1 -2032 4114 3877 313 213 88 37 chr1 118686108 118686244 -163507420 - L1MEc LINE L1 -5235 1161 1019 236 257 30 10 chr1 118686247 118686348 -163507316 + (TA)n Simple_repeat Simple_repeat 1 103 0 1770 288 106 16 chr1 118686405 118687239 -163506425 - L1MEc LINE L1 -5453 943 35 3305 107 18 47 chr1 118687870 118688421 -163505243 - L1PA14 LINE L1 -2 6159 5625 600 260 47 5 chr1 118690212 118690404 -163503260 + MER3 DNA MER1_type 10 209 0 22 0 0 0 chr1 118690609 118690631 -163503033 + AT_rich Low_complexity Low_complexity 1 22 0 241 170 21 0 chr1 118690679 118690726 -163502938 - LTR67 LTR ERVL -18 539 492 1679 250 118 93 chr1 118690739 118691775 -163501889 + MER69B DNA AcHobo 2 1070 -1456 1794 112 15 0 chr1 118691775 118692035 -163501629 - AluSq SINE Alu -9 304 41 1679 250 118 93 chr1 118692035 118692129 -163501535 + MER69B DNA AcHobo 1070 1160 -66 537 345 84 26 chr1 118692703 118693132 -163500532 + L2 LINE L2 1640 2093 -1221 246 105 0 0 chr1 118693151 118693189 -163500475 + (CA)n Simple_repeat Simple_repeat 2 39 0 267 125 0 0 chr1 118693349 118693389 -163500275 - MLT1B LTR MaLR -39 351 312 206 191 0 24 chr1 118695326 118695368 -163498296 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 65 0 0 chr1 118695394 118695440 -163498224 + AT_rich Low_complexity Low_complexity 1 46 0 187 423 16 8 chr1 118695698 118695821 -163497843 + L2 LINE L2 2650 2773 -541 26 0 0 0 chr1 118697453 118697479 -163496185 + AT_rich Low_complexity Low_complexity 1 26 0 342 183 0 0 chr1 118697594 118697665 -163495999 + GA-rich Low_complexity Low_complexity 2 72 0 2208 85 0 0 chr1 118697721 118698004 -163495660 + AluSg SINE Alu 4 286 -24 349 306 52 17 chr1 118698099 118698272 -163495392 + L1M4c LINE L1 1283 1461 -4923 1201 178 59 56 chr1 118698785 118699072 -163494592 - AluJo SINE Alu -24 288 1 355 218 55 163 chr1 118699117 118699406 -163494258 + L1MC5 LINE L1 7604 7861 -100 1868 113 0 8 chr1 118699435 118699701 -163493963 - AluSg SINE Alu -1 309 46 23 68 0 0 chr1 118700089 118700133 -163493531 + AT_rich Low_complexity Low_complexity 1 44 0 226 271 12 24 chr1 118700627 118700712 -163492952 + CT-rich Low_complexity Low_complexity 2 85 0 639 254 59 6 chr1 118701483 118701652 -163492012 - MIR SINE MIR 0 262 85 3323 241 34 86 chr1 118703707 118703880 -163489784 - L1MB8 LINE L1 -6 6172 5991 1543 167 35 50 chr1 118703880 118704222 -163489442 + MER1B DNA MER1_type 1 337 0 3323 241 34 86 chr1 118704222 118704453 -163489211 - L1MB8 LINE L1 -187 5991 5749 1854 119 4 18 chr1 118704453 118704731 -163488933 - AluSq SINE Alu -39 274 1 3323 241 34 86 chr1 118704731 118706907 -163486757 - L1MB8 LINE L1 -429 5749 3740 207 0 0 0 chr1 118707805 118707828 -163485836 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 215 267 12 43 chr1 118707932 118708093 -163485571 + A-rich Low_complexity Low_complexity 3 158 0 371 273 50 56 chr1 118708689 118708960 -163484704 + MER34C LTR ERV1 1 263 -279 230 253 101 0 chr1 118708974 118709053 -163484611 + MIR SINE MIR 105 191 -71 26 74 0 0 chr1 118709086 118709140 -163484524 + AT_rich Low_complexity Low_complexity 1 54 0 29 70 0 0 chr1 118709285 118709342 -163484322 + AT_rich Low_complexity Low_complexity 1 57 0 235 211 164 46 chr1 118709693 118709845 -163483819 + MLT1L LTR MaLR 412 581 -34 29 28 0 0 chr1 118709859 118709895 -163483769 + AT_rich Low_complexity Low_complexity 1 36 0 4418 36 2 0 chr1 118710006 118710538 -163483126 - L1PA4 LINE L1 0 6155 5623 13850 44 1 1 chr1 118710538 118712273 -163481391 + L1P LINE L1 3589 5324 -822 1018 107 0 34 chr1 118713152 118713301 -163480363 - AluSq/x SINE Alu -167 146 3 185 365 35 26 chr1 118713308 118713382 -163480282 + L2 LINE L2 3162 3239 -74 180 0 0 0 chr1 118713382 118713402 -163480262 + (TAA)n Simple_repeat Simple_repeat 1 20 0 185 365 35 26 chr1 118713402 118713442 -163480222 + L2 LINE L2 3239 3277 -36 900 256 123 8 chr1 118713532 118713915 -163479749 - MER20B DNA MER1_type -144 639 213 463 327 23 31 chr1 118713969 118714229 -163479435 - L1ME1 LINE L1 -4 6162 5905 877 214 0 11 chr1 118714247 118714425 -163479239 + AluSp SINE Alu 137 312 -1 277 288 21 125 chr1 118716218 118716473 -163477191 - MIR SINE MIR -10 252 25 503 358 61 52 chr1 118716789 118717284 -163476380 - LTR67 LTR ERVL -19 538 40 1597 167 55 0 chr1 118717686 118717979 -163475685 + AluSx SINE Alu 4 312 0 21 36 0 0 chr1 118720166 118720194 -163473470 + AT_rich Low_complexity Low_complexity 1 28 0 2717 25 3 0 chr1 118721503 118721827 -163471837 + L1PA2 LINE L1 5830 6154 -1 26 30 0 0 chr1 118722165 118722198 -163471466 + AT_rich Low_complexity Low_complexity 1 33 0 228 111 0 0 chr1 118724215 118724251 -163469413 + (CA)n Simple_repeat Simple_repeat 1 36 0 395 206 80 75 chr1 118724336 118724535 -163469129 + L2 LINE L2 2153 2352 -962 263 182 18 0 chr1 118724548 118724603 -163469061 - HERVL LTR ERVL -5598 56 1 324 250 108 14 chr1 118724683 118724831 -163468833 + L1MA10 LINE L1 6166 6327 -7 21 36 0 0 chr1 118725677 118725705 -163467959 + AT_rich Low_complexity Low_complexity 1 28 0 2688 20 0 3 chr1 118725705 118726011 -163467653 + AluYa5 SINE Alu 1 305 -6 224 278 14 0 chr1 118726307 118726379 -163467285 + (TATG)n Simple_repeat Simple_repeat 4 76 0 374 238 25 0 chr1 118726389 118726469 -163467195 + MER7A DNA MER2_type 1 80 -266 21 0 0 0 chr1 118726666 118726687 -163466977 + AT_rich Low_complexity Low_complexity 1 21 0 247 231 130 56 chr1 118726868 118727084 -163466580 + L1MC/D LINE L1 5255 5486 -2322 21 0 0 0 chr1 118727155 118727176 -163466488 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr1 118727602 118727636 -163466028 + AT_rich Low_complexity Low_complexity 1 34 0 609 206 6 18 chr1 118727994 118728159 -163465505 + GA-rich Low_complexity Low_complexity 3 165 0 284 241 0 0 chr1 118728294 118728352 -163465312 - L1MC3 LINE L1 -518 7685 7628 250 271 24 12 chr1 118728372 118728457 -163465207 - MLT1F1 LTR MaLR -442 125 40 6104 237 54 31 chr1 118728459 118730572 -163463092 - L1MC3 LINE L1 -686 7517 5232 509 0 16 0 chr1 118730572 118730633 -163463031 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 6104 237 54 31 chr1 118730633 118730825 -163462839 - L1MC3 LINE L1 -2971 5232 5046 2237 285 65 20 chr1 118730834 118732020 -163461644 - L1MC3 LINE L1 -2446 4118 2880 611 237 15 0 chr1 118732072 118732203 -163461461 + MLT1A1 LTR MaLR 231 363 -2 2811 206 23 2 chr1 118732206 118732763 -163460901 + MLT1A1-int LTR MaLR 2 570 -1165 * 3198 228 7 18 chr1 118732762 118733309 -163460355 + L1P LINE L1 4471 5007 -1139 1630 191 3 10 chr1 118733309 118733613 -163460051 + AluJb SINE Alu 1 302 -10 3198 228 7 18 chr1 118733613 118733890 -163459774 + L1P LINE L1 5007 5286 -860 2023 229 103 25 chr1 118733892 118734791 -163458873 + L1MCa LINE L1 867 1954 -4472 1431 238 50 6 chr1 118734794 118735135 -163458529 - MLT1A1 LTR MaLR -2 363 8 1111 289 105 82 chr1 118735140 118735604 -163458060 - L1MC3 LINE L1 -5437 819 241 1114 30 0 0 chr1 118735604 118735738 -163457926 - L1PA2 LINE L1 -1 6154 6021 1111 289 105 82 chr1 118735738 118735923 -163457741 - L1MC3 LINE L1 -6015 241 62 32 26 0 0 chr1 118735923 118735962 -163457702 + AT_rich Low_complexity Low_complexity 1 39 0 434 356 47 22 chr1 118736214 118736534 -163457130 - L1M4 LINE L1 -3320 2826 2499 4562 165 16 39 chr1 118736803 118737380 -163456284 + L1PB4 LINE L1 5226 5777 -379 273 57 0 0 chr1 118737380 118737415 -163456249 + (CA)n Simple_repeat Simple_repeat 2 36 0 4562 165 16 39 chr1 118737415 118737784 -163455880 + L1PB4 LINE L1 5777 6153 -3 2256 235 10 14 chr1 118737882 118737921 -163455743 - MLT2B2 LTR ERVL -1 553 515 306 0 0 0 chr1 118737921 118737955 -163455709 + (CA)n Simple_repeat Simple_repeat 2 35 0 2256 235 10 14 chr1 118737955 118738410 -163455254 - MLT2B2 LTR ERVL -39 515 6 22 0 0 0 chr1 118738438 118738460 -163455204 + AT_rich Low_complexity Low_complexity 1 22 0 6171 107 11 0 chr1 118738526 118739898 -163453766 - L1PA8 LINE L1 -14 6158 4779 5461 113 10 1 chr1 118739899 118740704 -163452960 + L1PA8 LINE L1 3950 4761 -1385 2817 38 3 0 chr1 118740735 118741077 -163452587 + L1PA4 LINE L1 5810 6152 -3 51 31 0 0 chr1 118741102 118741167 -163452497 + AT_rich Low_complexity Low_complexity 1 65 0 313 289 21 21 chr1 118741482 118741579 -163452085 + L1MC4 LINE L1 6617 6713 -1329 23 33 0 0 chr1 118741865 118741895 -163451769 + AT_rich Low_complexity Low_complexity 1 30 0 363 121 0 0 chr1 118742660 118742718 -163450946 + (T)n Simple_repeat Simple_repeat 1 58 0 34 55 0 0 chr1 118743177 118743232 -163450432 + AT_rich Low_complexity Low_complexity 1 55 0 27 29 0 0 chr1 118743565 118743599 -163450065 + AT_rich Low_complexity Low_complexity 1 34 0 2323 122 57 10 chr1 118744474 118744860 -163448804 + MLT2A1 LTR ERVL 1 404 -40 311 176 0 15 chr1 118744861 118744929 -163448735 + (TA)n Simple_repeat Simple_repeat 1 67 0 357 59 0 20 chr1 118744943 118744994 -163448670 + MLT2A1 LTR ERVL 404 453 0 8725 102 13 0 chr1 118744994 118746207 -163447457 + HERVL-A1-A1 LTR ERVL 1 1229 -4425 320 0 0 0 chr1 118746472 118746510 -163447154 + MLT2A2 LTR ERVL 1 38 -415 32275 98 11 4 chr1 118746554 118750961 -163442703 + HERVL-A1-A1 LTR ERVL 1215 5654 0 2576 97 27 30 chr1 118750961 118751362 -163442302 + MLT2A1 LTR ERVL 1 400 -44 234 113 32 32 chr1 118751370 118751432 -163442232 + (TA)n Simple_repeat Simple_repeat 2 63 0 567 91 46 23 chr1 118751441 118751616 -163442048 + (TTATA)n Simple_repeat Simple_repeat 2 180 0 632 72 70 14 chr1 118751616 118751912 -163441752 + (TA)n Simple_repeat Simple_repeat 1 312 0 402 154 0 0 chr1 118753554 118753632 -163440032 + CT-rich Low_complexity Low_complexity 1 78 0 226 254 84 0 chr1 118753736 118753807 -163439857 + LTR13 LTR ERVK 661 737 -270 27 49 0 0 chr1 118753907 118753948 -163439716 + AT_rich Low_complexity Low_complexity 1 41 0 1131 298 92 51 chr1 118754341 118755008 -163438656 + MER21B LTR ERV1 18 711 -152 327 271 47 0 chr1 118755025 118755110 -163438554 + MER21B LTR ERV1 667 755 -108 439 339 94 77 chr1 118755330 118756749 -163436915 + L2 LINE L2 772 2228 -1086 564 89 0 0 chr1 118756749 118756828 -163436836 + (TG)n Simple_repeat Simple_repeat 2 80 0 439 339 94 77 chr1 118756828 118757176 -163436488 + L2 LINE L2 2228 2569 -745 472 248 0 23 chr1 118757755 118757884 -163435780 + FLAM_A SINE Alu 16 141 -1 563 265 82 12 chr1 118758232 118758402 -163435262 + MER74B LTR ERVL 373 554 -68 337 388 93 15 chr1 118758524 118758921 -163434743 + L2 LINE L2 2550 2977 -337 6531 165 48 16 chr1 118759237 118760494 -163433170 + HSMAR2 DNA Mariner 3 1300 -2 256 203 25 51 chr1 118760763 118760921 -163432743 + (TA)n Simple_repeat Simple_repeat 1 154 0 * 316 267 0 43 chr1 118760873 118761115 -163432549 + (TTATA)n Simple_repeat Simple_repeat 1 231 0 1402 193 27 84 chr1 118762432 118762837 -163430827 + MLT1B LTR MaLR 1 382 -8 30 69 0 0 chr1 118763358 118763416 -163430248 + AT_rich Low_complexity Low_complexity 1 58 0 2858 199 7 6 chr1 118764094 118764642 -163429022 - L1PB4 LINE L1 -23 6133 5585 358 214 0 0 chr1 118764643 118764699 -163428965 + tRNA-Leu-CTG tRNA tRNA 28 83 -3 657 210 11 6 chr1 118764715 118764870 -163428794 + L1ME LINE L1 5455 5613 -508 8164 206 106 29 chr1 118765173 118766233 -163427431 + L1M4c LINE L1 48 1026 -5356 751 150 0 8 chr1 118766233 118766366 -163427298 + L1PA16 LINE L1 6035 6166 0 8164 206 106 29 chr1 118766366 118767672 -163425992 + L1M4c LINE L1 1026 2609 -3773 270 331 21 14 chr1 118767717 118767859 -163425805 + MIR SINE MIR 120 262 0 242 355 28 9 chr1 118768049 118768156 -163425508 + L2 LINE L2 3193 3301 -12 334 244 47 0 chr1 118768742 118768828 -163424836 - MLT1E LTR MaLR -2 591 502 2158 73 15 0 chr1 118768828 118769100 -163424564 - AluY SINE Alu -35 276 1 451 261 141 7 chr1 118769120 118769262 -163424402 - MLT1E LTR MaLR -432 161 1 2024 289 109 65 chr1 118769611 118770050 -163423614 - HAL1 LINE L1 -325 2182 1764 2379 141 3 5 chr1 118770050 118770426 -163423238 + THE1C LTR MaLR 1 375 0 8820 134 38 41 chr1 118770426 118772011 -163421653 + THE1C-int LTR MaLR 1 1580 0 2216 130 36 3 chr1 118772011 118772373 -163421291 + THE1C LTR MaLR 1 374 -1 2024 289 109 65 chr1 118772373 118773892 -163419772 - HAL1 LINE L1 -743 1764 125 2458 151 25 34 chr1 118773892 118774184 -163419480 - L1MA3 LINE L1 -10 6295 6007 183 80 0 0 chr1 118774184 118774209 -163419455 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 2458 151 25 34 chr1 118774209 118774387 -163419277 - L1MA3 LINE L1 -298 6007 5829 2024 289 109 65 chr1 118774387 118774456 -163419208 - HAL1 LINE L1 -2382 125 61 849 297 11 11 chr1 118774649 118774912 -163418752 - MLT1C LTR MaLR -3 464 202 191 30 0 61 chr1 118774919 118774952 -163418712 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 27 49 0 0 chr1 118776284 118776325 -163417339 + AT_rich Low_complexity Low_complexity 1 41 0 1416 223 46 69 chr1 118776592 118777027 -163416637 + MLT1D LTR MaLR 1 425 -80 197 417 79 0 chr1 118777573 118777801 -163415863 + L2 LINE L2 2072 2317 -997 7534 31 0 0 chr1 118778019 118779075 -163414589 - L1PA3 LINE L1 -5 6150 5095 1801 28 0 0 chr1 118779075 118779288 -163414376 + L1PA3 LINE L1 4897 5109 -1037 2022 144 3 7 chr1 118779754 118780060 -163413604 - AluSx SINE Alu -7 305 1 284 301 116 25 chr1 118780349 118780668 -163412996 + L1ME2 LINE L1 5593 5940 -224 387 0 0 0 chr1 118780860 118780903 -163412761 + (TA)n Simple_repeat Simple_repeat 2 44 0 220 146 24 0 chr1 118781016 118781057 -163412607 + (TAA)n Simple_repeat Simple_repeat 1 42 0 214 317 155 7 chr1 118781504 118781646 -163412018 - L2 LINE L2 -9 3304 3142 25 99 0 0 chr1 118782014 118782095 -163411569 + AT_rich Low_complexity Low_complexity 1 81 0 2580 176 36 52 chr1 118782167 118782231 -163411433 - MLT2B2 LTR ERVL 0 515 452 554 75 0 0 chr1 118782231 118782311 -163411353 - L1MA2 LINE L1 0 6304 6225 2580 176 36 52 chr1 118782311 118782769 -163410895 - MLT2B2 LTR ERVL -63 452 1 648 256 67 42 chr1 118782900 118783259 -163410405 - LTR37A LTR ERV1 -1 425 58 21 57 0 0 chr1 118783712 118783747 -163409917 + AT_rich Low_complexity Low_complexity 1 35 0 252 209 0 47 chr1 118783962 118784048 -163409616 + (TA)n Simple_repeat Simple_repeat 1 82 0 237 261 5 20 chr1 118784390 118784599 -163409065 + CT-rich Low_complexity Low_complexity 1 205 0 260 277 11 0 chr1 118785019 118785113 -163408551 + (TA)n Simple_repeat Simple_repeat 1 95 0 511 348 40 12 chr1 118785631 118785922 -163407742 - MLT1J2 LTR MaLR -132 318 15 23 33 0 0 chr1 118786003 118786033 -163407631 + AT_rich Low_complexity Low_complexity 1 30 0 517 202 4 44 chr1 118787396 118787648 -163406016 + pTR5 LTR ERV1 781 1022 -1416 4310 124 42 5 chr1 118787734 118788397 -163405267 + LTR12 LTR ERV1 1 688 0 341 296 71 26 chr1 118789161 118789433 -163404231 + MLT1J1 LTR MaLR 48 333 -117 292 373 15 15 chr1 118789673 118789807 -163403857 + L2 LINE L2 3180 3313 0 319 294 19 69 chr1 118790036 118790196 -163403468 + MER5B DNA MER1_type 4 155 -23 227 389 16 16 chr1 118790104 118790230 -163403434 - MER5A DNA MER1_type -63 126 1 * 25 31 0 0 chr1 118790595 118790627 -163403037 + AT_rich Low_complexity Low_complexity 1 32 0 399 328 103 70 chr1 118790889 118791344 -163402320 - L2 LINE L2 -15 3298 2829 489 345 12 0 chr1 118791398 118791566 -163402098 - L2 LINE L2 -623 2691 2522 1510 177 69 30 chr1 118791579 118791940 -163401724 - THE1C LTR MaLR 0 375 1 7593 201 26 11 chr1 118791940 118793565 -163400099 - THE1C-int LTR MaLR 0 1651 2 1559 199 49 25 chr1 118793568 118793934 -163399730 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr1 118794219 118794245 -163399419 + AT_rich Low_complexity Low_complexity 1 26 0 6387 73 36 0 chr1 118795489 118796737 -163396927 + L1PA8 LINE L1 4889 6169 -3 16016 196 57 26 chr1 118797455 118799128 -163394536 + L1MA1 LINE L1 15 1635 -5930 333 0 0 0 chr1 118799128 118799165 -163394499 + (GA)n Simple_repeat Simple_repeat 2 38 0 16016 196 57 26 chr1 118799165 118801395 -163392269 + L1MA1 LINE L1 1635 4031 -3534 1107 114 36 0 chr1 118801395 118801562 -163392102 - HERVL LTR ERVL -4754 900 728 182 300 122 0 chr1 118801562 118801652 -163392012 - L2 LINE L2 -2865 449 349 4557 101 6 0 chr1 118801652 118802277 -163391387 - HERVL-A2 LTR ERVL -5017 637 9 2701 108 78 26 chr1 118802305 118802339 -163391325 - MLT2A2 LTR ERVL -5 448 417 288 0 0 0 chr1 118802339 118802371 -163391293 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 654 47 0 0 chr1 118802370 118802456 -163391208 + (GA)n Simple_repeat Simple_repeat 2 87 0 2701 108 78 26 chr1 118802371 118802847 -163390817 - MLT2A2 LTR ERVL -36 417 1 8574 164 25 14 chr1 118802847 118803088 -163390576 + L1MA1 LINE L1 4993 5230 -2491 1456 214 58 17 chr1 118803088 118803448 -163390216 + THE1C LTR MaLR 1 375 0 8574 164 25 14 chr1 118803448 118804336 -163389328 + L1MA1 LINE L1 5230 6107 -1614 1038 113 6 0 chr1 118804336 118804489 -163389175 + L1PA11 LINE L1 6015 6174 0 8574 164 25 14 chr1 118804489 118805898 -163387766 + L1MA1 LINE L1 6107 7557 -164 291 372 58 29 chr1 118807008 118807299 -163386365 + L2 LINE L2 2256 2560 -754 7701 49 2 0 chr1 118807299 118809036 -163384628 - L1PA5 LINE L1 0 6154 4419 291 372 58 29 chr1 118809036 118809091 -163384573 + L2 LINE L2 2560 2612 -702 193 350 31 21 chr1 118809157 118809254 -163384410 + L2 LINE L2 2788 2885 -429 334 330 32 32 chr1 118809426 118809611 -163384053 - LTR16C LTR ERVL -13 478 294 276 100 0 0 chr1 118809783 118809823 -163383841 + (A)n Simple_repeat Simple_repeat 1 40 0 533 347 49 44 chr1 118810183 118810731 -163382933 - ERVL LTR ERVL -471 5293 4743 1141 162 5 5 chr1 118810771 118810969 -163382695 + Tigger1 DNA MER2_type 2221 2418 0 598 218 69 23 chr1 118811100 118811274 -163382390 - MER39 LTR ERV1 0 707 526 11419 33 2 0 chr1 118811308 118812688 -163380976 - L1P LINE L1 -3135 3011 1629 13856 33 2 0 chr1 118812688 118815128 -163378536 + L1PA3 LINE L1 3718 6155 0 968 117 0 14 chr1 118815144 118815289 -163378375 + FLAM_C SINE Alu 1 143 0 511 201 113 63 chr1 118815305 118815464 -163378200 - MER39 LTR ERV1 -236 471 305 420 197 90 33 chr1 118815433 118815555 -163378109 - MER39 LTR ERV1 -573 134 6 * 526 252 62 82 chr1 118815610 118815916 -163377748 + L1ME1 LINE L1 5867 6166 0 21 71 0 0 chr1 118815955 118815997 -163377667 + AT_rich Low_complexity Low_complexity 1 42 0 359 297 45 10 chr1 118816404 118816606 -163377058 + L1ME LINE L1 5561 5769 -352 213 240 30 20 chr1 118817073 118817173 -163376491 + (TATAA)n Simple_repeat Simple_repeat 4 104 0 695 211 25 25 chr1 118817290 118817489 -163376175 + L1MA7 LINE L1 5108 5306 -840 * 4703 151 45 2 chr1 118817484 118818385 -163375279 + L1PB4 LINE L1 5209 6148 -8 2178 188 48 23 chr1 118818367 118818882 -163374782 + L1MA7 LINE L1 5260 5787 -504 * 1240 209 46 74 chr1 118818882 118819232 -163374432 + MER2 DNA MER2_type 1 340 -5 2056 160 50 77 chr1 118819236 118819756 -163373908 + L1MA7 LINE L1 5786 6291 0 246 364 74 12 chr1 118820628 118820790 -163372874 - L2 LINE L2 -588 2726 2555 728 297 52 17 chr1 118820844 118821076 -163372588 - MIR SINE MIR -21 241 2 21 57 0 0 chr1 118822693 118822728 -163370936 + AT_rich Low_complexity Low_complexity 1 35 0 1312 225 28 92 chr1 118823029 118823069 -163370595 - MLT2D LTR ERVL 0 414 373 225 0 0 0 chr1 118823069 118823094 -163370570 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr1 118823093 118823113 -163370551 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 1312 225 28 92 chr1 118823094 118823507 -163370157 - MLT2D LTR ERVL -41 373 8 201 310 35 23 chr1 118824068 118824155 -163369509 + MIR3 SINE MIR 113 200 -8 225 203 85 17 chr1 118824906 118824965 -163368699 + L2 LINE L2 359 421 -2893 5355 167 12 29 chr1 118824985 118826439 -163367225 + L1MA4A LINE L1 4876 6303 0 186 133 0 0 chr1 118826441 118826471 -163367193 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 24 53 0 0 chr1 118826532 118826570 -163367094 + AT_rich Low_complexity Low_complexity 1 38 0 203 250 0 0 chr1 118827119 118827171 -163366493 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 300 315 97 53 chr1 118827385 118827725 -163365939 + L1 LINE L1 4398 4752 -1394 29 60 0 0 chr1 118828713 118828763 -163364901 + AT_rich Low_complexity Low_complexity 1 50 0 1003 331 40 8 chr1 118829138 118829509 -163364155 - LTR16B LTR ERVL -47 417 35 298 158 53 40 chr1 118829622 118829698 -163363966 + L1MA7 LINE L1 6210 6286 -5 1724 156 37 61 chr1 118829756 118830135 -163363529 + THE1C LTR MaLR 4 373 -2 8731 133 20 77 chr1 118830137 118831813 -163361851 + THE1C-int LTR MaLR 1 1580 0 1587 191 42 33 chr1 118831824 118832185 -163361479 + THE1C LTR MaLR 12 375 0 1068 300 121 35 chr1 118832240 118832416 -163361248 + MLT2F LTR ERVL 12 172 -491 180 77 0 0 chr1 118832416 118832442 -163361222 + (CA)n Simple_repeat Simple_repeat 1 26 0 1068 300 121 35 chr1 118832442 118832861 -163360803 + MLT2F LTR ERVL 172 658 -5 676 309 93 7 chr1 118833521 118833799 -163359865 + LTR41 LTR ERVL 9 310 -463 280 250 45 11 chr1 118833824 118833912 -163359752 + LTR41 LTR ERVL 234 324 -449 2211 93 0 0 chr1 118834112 118834424 -163359240 - L1PA5 LINE L1 0 6154 5843 513 303 16 74 chr1 118834498 118834808 -163358856 + LTR41 LTR ERVL 481 772 -1 540 307 7 0 chr1 118835408 118835558 -163358106 + MER63A DNA MER1_type 57 207 -3 30 59 0 0 chr1 118835728 118835779 -163357885 + AT_rich Low_complexity Low_complexity 1 51 0 190 393 43 21 chr1 118837763 118837997 -163355667 - L2 LINE L2 -540 2774 2536 22 0 0 0 chr1 118838153 118838175 -163355489 + AT_rich Low_complexity Low_complexity 1 22 0 1128 325 229 20 chr1 118838352 118839732 -163353932 + L2 LINE L2 228 1896 -1418 182 321 36 12 chr1 118839865 118839949 -163353715 + L2 LINE L2 2376 2461 -853 1822 143 13 30 chr1 118840323 118840623 -163353041 - AluSx SINE Alu -3 309 15 1665 180 141 5 chr1 118840777 118841154 -163352510 + MSTA LTR MaLR 1 428 0 8393 208 11 12 chr1 118841154 118842598 -163351066 + MSTA-int LTR MaLR 1 1444 -207 3934 123 5 3 chr1 118842598 118843197 -163350467 + MER4A LTR ERV1 1 600 0 8393 208 11 12 chr1 118843197 118843405 -163350259 + MSTA-int LTR MaLR 1444 1651 0 1780 182 91 8 chr1 118843405 118843800 -163349864 + MSTA LTR MaLR 1 428 0 379 301 131 0 chr1 118843974 118844127 -163349537 + MLT1F LTR MaLR 366 538 -4 248 0 31 0 chr1 118844285 118844317 -163349347 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 706 311 31 0 chr1 118844398 118844623 -163349041 - L2 LINE L2 -964 2350 2119 368 180 0 11 chr1 118844764 118844853 -163348811 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1342 263 12 69 chr1 118844853 118845363 -163348301 - MLT2B1 LTR ERVL -39 481 1 1368 264 73 107 chr1 118845492 118846366 -163347298 - L1MC4 LINE L1 -1 8041 7230 2094 142 0 9 chr1 118846366 118846682 -163346982 + AluSq SINE Alu 1 313 0 1368 264 73 107 chr1 118846682 118847225 -163346439 - L1MC4 LINE L1 -812 7230 6671 471 119 18 119 chr1 118847264 118847373 -163346291 + MER4A LTR ERV1 1 98 -566 1625 146 164 75 chr1 118847373 118847744 -163345920 + MER4A LTR ERV1 261 664 0 305 280 121 22 chr1 118847745 118847927 -163345737 - L1MC3 LINE L1 -1150 6635 6436 504 199 6 33 chr1 118848123 118848304 -163345360 + CT-rich Low_complexity Low_complexity 1 176 0 318 241 108 49 chr1 118848327 118848747 -163344917 - L1MC4a LINE L1 -1523 6285 5802 24 77 0 0 chr1 118849533 118849585 -163344079 + AT_rich Low_complexity Low_complexity 1 52 0 218 212 0 47 chr1 118849585 118849670 -163343994 + T-rich Low_complexity Low_complexity 2 82 0 260 136 25 25 chr1 118850275 118850356 -163343308 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 2122 169 62 12 chr1 118852253 118852656 -163341008 - MSTB LTR MaLR 0 426 4 390 421 13 0 chr1 118853465 118853617 -163340047 + MER91A DNA MER1_type 18 171 -25 223 326 11 32 chr1 118854175 118854270 -163339394 - MIR SINE MIR -124 138 46 2366 80 0 7 chr1 118854661 118854960 -163338704 + AluY SINE Alu 1 297 -14 405 0 0 0 chr1 118855226 118855271 -163338393 + (TG)n Simple_repeat Simple_repeat 2 46 0 1306 159 59 103 chr1 118855439 118855829 -163337835 + THE1C LTR MaLR 3 375 0 217 250 0 16 chr1 118856670 118856734 -163336930 + A-rich Low_complexity Low_complexity 3 65 0 201 266 0 16 chr1 118857053 118857117 -163336547 + A-rich Low_complexity Low_complexity 3 65 0 249 280 30 30 chr1 118858149 118858249 -163335415 + LTR48B LTR ERV1 1 100 -544 * 1329 232 35 62 chr1 118858223 118858658 -163335006 + MER39 LTR ERV1 260 682 -25 292 287 29 22 chr1 118858807 118858943 -163334721 + GA-rich Low_complexity Low_complexity 3 139 0 237 271 47 0 chr1 118859024 118859109 -163334555 - MLT1J1 LTR MaLR -287 159 71 28 0 0 0 chr1 118859333 118859361 -163334303 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr1 118859527 118859557 -163334107 + AT_rich Low_complexity Low_complexity 1 30 0 1823 179 43 7 chr1 118859580 118860222 -163333442 - L1P5 LINE L1 -613 5543 4881 1780 219 30 0 chr1 118860223 118860278 -163333386 + L1PB4 LINE L1 5731 5783 -373 249 83 0 0 chr1 118860278 118860314 -163333350 + (CA)n Simple_repeat Simple_repeat 2 37 0 1780 219 30 0 chr1 118860314 118860660 -163333004 + L1PB4 LINE L1 5783 6144 -12 23 0 0 0 chr1 118860660 118860683 -163332981 + AT_rich Low_complexity Low_complexity 1 23 0 1659 168 0 20 chr1 118860801 118861117 -163332547 - AluSx SINE Alu 0 310 1 757 198 6 0 chr1 118861128 118861285 -163332379 - L1MA10 LINE L1 -3 6331 6174 21 57 0 0 chr1 118861611 118861646 -163332018 + AT_rich Low_complexity Low_complexity 1 35 0 4826 204 19 25 chr1 118862323 118864363 -163329301 - L1PA16 LINE L1 -3 6866 4847 * 5184 196 128 69 chr1 118864336 118866043 -163327621 - L1PA16 LINE L1 -4757 2092 46 30 59 0 0 chr1 118866215 118866266 -163327398 + AT_rich Low_complexity Low_complexity 1 51 0 207 0 0 0 chr1 118866504 118866527 -163327137 + (TA)n Simple_repeat Simple_repeat 1 23 0 1575 187 3 14 chr1 118867370 118867653 -163326011 + AluJo SINE Alu 5 284 -28 320 324 68 17 chr1 118867673 118867849 -163325815 + L2 LINE L2 3117 3301 -12 269 290 0 0 chr1 118868663 118868725 -163324939 - L2 LINE L2 -1096 2218 2157 592 341 67 3 chr1 118868781 118869095 -163324569 - L2 LINE L2 -1807 1507 1174 245 111 0 0 chr1 118869129 118869165 -163324499 - L1M4 LINE L1 -2313 3833 3798 356 328 22 35 chr1 118869197 118869429 -163324235 + MLT1J LTR MaLR 30 258 -253 373 100 29 29 chr1 118870699 118870769 -163322895 + L1MA3 LINE L1 6236 6305 0 2297 85 0 3 chr1 118870818 118871113 -163322551 + AluY SINE Alu 1 294 -17 351 0 0 0 chr1 118871140 118871179 -163322485 + (TTA)n Simple_repeat Simple_repeat 2 40 0 19591 97 5 7 chr1 118871180 118874851 -163318813 - L1PA7 LINE L1 -16 6453 2788 11604 129 15 49 chr1 118874870 118877075 -163316589 - L1PA7 LINE L1 -3836 2625 420 195 42 0 0 chr1 118877075 118877099 -163316565 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 11604 129 15 49 chr1 118877099 118877492 -163316172 - L1PA7 LINE L1 -6041 420 15 25 51 0 0 chr1 118877759 118877798 -163315866 + AT_rich Low_complexity Low_complexity 1 39 0 1047 208 14 10 chr1 118877816 118878023 -163315641 + MLT1A1 LTR MaLR 158 365 0 789 285 109 19 chr1 118878103 118878606 -163315058 + MLT1E LTR MaLR 14 593 0 665 254 65 29 chr1 118879291 118879566 -163314098 + AluJo SINE Alu 5 289 -13 1992 264 42 57 chr1 118880050 118880501 -163313163 - L1ME1 LINE L1 -5 6161 5728 1772 229 68 55 chr1 118880501 118881047 -163312617 + MLT2B3 LTR ERVL 2 554 0 1992 264 42 57 chr1 118881047 118881448 -163312216 - L1ME1 LINE L1 -438 5728 5322 2383 65 0 0 chr1 118881450 118881784 -163311880 - AluY SINE Alu 0 334 1 24 32 0 0 chr1 118884032 118884063 -163309601 + AT_rich Low_complexity Low_complexity 1 31 0 935 254 119 14 chr1 118885868 118886356 -163307308 - L1M4 LINE L1 -5079 1463 925 396 286 78 99 chr1 118886371 118886804 -163306860 - L1M4 LINE L1 -5587 955 532 249 148 37 0 chr1 118887172 118887253 -163306411 + (TA)n Simple_repeat Simple_repeat 2 85 0 529 199 162 7 chr1 118889245 118889381 -163304283 - MER58B DNA MER1_type -17 324 168 24 32 0 0 chr1 118889381 118889412 -163304252 + AT_rich Low_complexity Low_complexity 1 31 0 30 69 0 0 chr1 118889512 118889570 -163304094 + AT_rich Low_complexity Low_complexity 1 58 0 22 80 0 0 chr1 118890051 118890101 -163303563 + AT_rich Low_complexity Low_complexity 1 50 0 1307 170 5 9 chr1 118890115 118890333 -163303331 + AluSq SINE Alu 21 237 -76 29 60 0 0 chr1 118890484 118890534 -163303130 + AT_rich Low_complexity Low_complexity 1 50 0 1632 165 4 11 chr1 118890548 118890848 -163302816 + AluSx SINE Alu 21 312 0 2555 148 2 0 chr1 118890889 118891300 -163302364 - L1PA11 LINE L1 -3 6171 5760 244 138 172 0 chr1 118891325 118891383 -163302281 - LOR1a LTR ERV1 -429 68 1 633 141 0 0 chr1 118891383 118891475 -163302189 - LOR1a-int LTR ERV1 0 8120 8029 1645 116 16 0 chr1 118891475 118891725 -163301939 - LOR1-int LTR ERV1 -2058 6062 5809 * 21764 138 41 24 chr1 118891724 118894466 -163299198 - LOR1-int LTR ERV1 -2596 5524 2691 1781 173 3 0 chr1 118894466 118894787 -163298877 + AluSx SINE Alu 3 324 0 21764 138 41 24 chr1 118894787 118896107 -163297557 - LOR1-int LTR ERV1 -5429 2691 1394 2342 125 2 23 chr1 118896139 118896532 -163297132 - LOR1-int LTR ERV1 -6824 1296 912 380 333 48 6 chr1 118896556 118896724 -163296940 + L1M4 LINE L1 3692 3866 -2280 563 255 101 84 chr1 118896738 118897106 -163296558 - LTR41 LTR ERVL -14 759 386 1318 332 37 33 chr1 118897151 118897375 -163296289 - ERVL LTR ERVL -329 5435 5213 210 37 0 0 chr1 118897375 118897402 -163296262 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1318 332 37 33 chr1 118897402 118898089 -163295575 - ERVL LTR ERVL -551 5213 4520 1475 348 42 25 chr1 118898141 118898903 -163294761 - ERVL LTR ERVL -2374 3390 2616 1704 243 30 26 chr1 118898966 118899465 -163294199 + MLT1D LTR MaLR 1 501 -4 736 311 161 29 chr1 118899722 118900304 -163293360 - LTR41 LTR ERVL -114 659 1 1413 164 101 71 chr1 118901328 118901664 -163292000 - MSTB LTR MaLR -2 424 79 1671 219 104 130 chr1 118901668 118902632 -163291032 + LTR1B LTR ERV1 1 1020 0 258 180 0 20 chr1 118902635 118902685 -163290979 + HUERS-P2 LTR ERV1 6 54 -7037 1480 259 69 21 chr1 118902752 118903340 -163290324 + HUERS-P2 LTR ERV1 169 587 -2501 11213 198 16 11 chr1 118903368 118905455 -163288209 + HUERS-P2 LTR ERV1 575 2671 -417 972 139 33 0 chr1 118905505 118905656 -163288008 + LTR1B-int LTR ERV1 4610 4765 -2326 * 3951 163 8 2 chr1 118905640 118906279 -163287385 + LTR1B-int LTR ERV1 5948 6590 -501 2069 171 12 0 chr1 118906286 118906626 -163287038 + LTR1B-int LTR ERV1 6747 7090 -1 1477 209 73 129 chr1 118906628 118907417 -163286247 + LTR1B LTR ERV1 1 745 -81 381 244 30 104 chr1 118907446 118907610 -163286054 + LTR28 LTR ERV1 869 1020 0 464 169 0 0 chr1 118907612 118907689 -163285975 - MSTB LTR MaLR -351 77 1 22 35 0 0 chr1 118907765 118907794 -163285870 + AT_rich Low_complexity Low_complexity 1 29 0 2146 111 14 0 chr1 118908862 118909150 -163284514 - AluSx SINE Alu -18 294 3 28 61 0 0 chr1 118909766 118909815 -163283849 + AT_rich Low_complexity Low_complexity 1 49 0 1000 358 104 17 chr1 118909902 118910620 -163283044 - L2 LINE L2 -239 3074 2295 296 213 0 0 chr1 118910649 118910710 -163282954 + LTR33 LTR ERVL 8 68 -453 456 180 22 0 chr1 118910741 118910830 -163282834 - L1MA4A LINE L1 -23 6280 6190 1580 163 36 24 chr1 118910835 118911172 -163282492 - L1MA4A LINE L1 -181 6122 5782 608 148 0 0 chr1 118911343 118911483 -163282181 - AluSg/x SINE Alu 0 341 202 433 229 0 19 chr1 118913277 118913382 -163280282 + MIR SINE MIR 129 231 -31 1482 207 65 41 chr1 118913743 118914159 -163279505 - MER31A LTR ERV1 -43 442 17 813 11 0 0 chr1 118914232 118914327 -163279337 - L1PA4 LINE L1 -3 6152 6058 603 241 0 15 chr1 118915803 118915936 -163277728 - MLT1A1 LTR MaLR 0 365 235 658 322 62 42 chr1 118916039 118916696 -163276968 - L2 LINE L2 0 3313 2644 452 273 16 0 chr1 118916699 118916827 -163276837 + MIR SINE MIR 128 257 -5 21 0 0 0 chr1 118917360 118917381 -163276283 + AT_rich Low_complexity Low_complexity 1 21 0 710 291 121 43 chr1 118917999 118918524 -163275140 + L2 LINE L2 2616 3198 -115 252 0 0 0 chr1 118918524 118918552 -163275112 + (TG)n Simple_repeat Simple_repeat 2 29 0 710 291 121 43 chr1 118918552 118918674 -163274990 + L2 LINE L2 3198 3309 -4 1428 171 18 18 chr1 118918929 118919243 -163274421 - AluSx SINE Alu 0 316 3 2185 78 0 0 chr1 118919316 118919624 -163274040 - AluY SINE Alu 0 308 1 328 83 0 0 chr1 118919892 118919940 -163273724 + L1MD2 LINE L1 6295 6342 -17 24 53 0 0 chr1 118919950 118919988 -163273676 + AT_rich Low_complexity Low_complexity 1 38 0 272 296 196 31 chr1 118920080 118920340 -163273324 - L2 LINE L2 -82 3231 2929 322 327 0 0 chr1 118921202 118921306 -163272358 - MIR SINE MIR -64 198 95 374 293 94 28 chr1 118921429 118921610 -163272054 - MLT1K LTR MaLR -89 499 307 576 334 85 24 chr1 118921775 118922116 -163271548 + L2 LINE L2 2508 2869 -445 192 277 138 11 chr1 118922223 118922317 -163271347 + MIR SINE MIR 112 217 -45 2987 150 78 0 chr1 118922372 118922886 -163270778 - MER41C LTR ERV1 0 554 1 309 325 53 20 chr1 118922906 118923057 -163270607 + L2 LINE L2 3156 3311 -2 2012 120 52 60 chr1 118923580 118923947 -163269717 + THE1B LTR MaLR 1 364 0 11144 108 4 2 chr1 118923947 118925523 -163268141 + THE1B-int LTR MaLR 1 1580 0 1951 141 51 25 chr1 118925523 118925878 -163267786 + THE1B LTR MaLR 1 364 0 452 301 92 68 chr1 118926007 118926389 -163267275 + MLT1L LTR MaLR 222 612 -3 1846 158 46 3 chr1 118926682 118927011 -163266653 + MER61A LTR ERV1 1 343 0 21 57 0 0 chr1 118927400 118927435 -163266229 + AT_rich Low_complexity Low_complexity 1 35 0 1995 122 11 0 chr1 118928339 118928626 -163265038 + AluSx SINE Alu 1 290 -22 499 259 45 15 chr1 118928721 118928922 -163264742 - L1ME3 LINE L1 -22 6140 5934 378 325 126 43 chr1 118928933 118929370 -163264294 - L1ME LINE L1 -5069 1001 529 4648 218 46 27 chr1 118929631 118931792 -163261872 - L1MB1 LINE L1 0 6168 3961 2220 136 3 3 chr1 118931801 118932162 -163261502 - L1PB1 LINE L1 0 6151 5791 216 200 0 0 chr1 118932162 118932212 -163261452 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 226 127 18 18 chr1 118932214 118932269 -163261395 + LTR66 LTR ERVL 382 436 -174 288 253 0 0 chr1 118932288 118932371 -163261293 + L1MC4 LINE L1 6614 6696 -1346 * 882 218 38 0 chr1 118932368 118932579 -163261085 - L1 LINE L1 -2023 4123 3905 241 172 16 31 chr1 118932580 118932644 -163261020 + (TA)n Simple_repeat Simple_repeat 1 63 0 12631 211 16 10 chr1 118932652 118936053 -163257611 - L1P5 LINE L1 -360 6507 3083 25020 56 9 1 chr1 118936071 118940136 -163253528 - L1PA5 LINE L1 -7 6147 2048 3654 82 2 2 chr1 118940123 118940621 -163253043 + L1P LINE L1 1345 1842 -4304 * 6515 26 1 0 chr1 118940646 118941410 -163252254 - L1PA3 LINE L1 0 6155 5391 * 8673 31 1 1 chr1 118941409 118942476 -163251188 + L1PA3 LINE L1 4334 5400 -746 1351 109 0 10 chr1 118942473 118942675 -163250989 + L1P LINE L1 1832 2031 -4115 * 9186 156 81 23 chr1 118942683 118945449 -163248215 - L1P5 LINE L1 -3776 3086 4 225 253 25 38 chr1 118946115 118946194 -163247470 + L2 LINE L2 2285 2362 -952 2394 119 30 0 chr1 118946696 118947065 -163246599 - L1PA11 LINE L1 -5 6169 5790 264 281 140 18 chr1 118947256 118947370 -163246294 + L2 LINE L2 3177 3304 -9 31 82 0 0 chr1 118948788 118948861 -163244803 + AT_rich Low_complexity Low_complexity 1 73 0 271 266 43 86 chr1 118949176 118949235 -163244429 - L1ME2 LINE L1 -27 6137 6077 1869 250 33 11 chr1 118949235 118949695 -163243969 + MER70A LTR ERVL 1 470 -2 271 266 43 86 chr1 118949695 118949774 -163243890 - L1ME2 LINE L1 -87 6077 6005 920 145 6 0 chr1 118949849 118950008 -163243656 - L1MA6 LINE L1 -1 6299 6140 11985 208 48 12 chr1 118950023 118950720 -163242944 - L1MA6 LINE L1 -751 5395 4724 4375 101 57 1 chr1 118950720 118951372 -163242292 - LTR12 LTR ERV1 0 688 1 11985 208 48 12 chr1 118951372 118951470 -163242194 - L1MA6 LINE L1 -1422 4724 4631 254 29 29 0 chr1 118951470 118951505 -163242159 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1780 146 0 4 chr1 118951509 118951783 -163241881 - AluSx SINE Alu -37 275 3 11985 208 48 12 chr1 118951783 118954006 -163239658 - L1MA6 LINE L1 -1517 4629 2322 254 0 87 0 chr1 118954122 118954168 -163239496 + (TA)n Simple_repeat Simple_repeat 1 50 0 1223 276 35 36 chr1 118954276 118954882 -163238782 - HUERS-P2 LTR ERV1 -2462 626 75 337 314 8 25 chr1 118955023 118955141 -163238523 - LTR28 LTR ERV1 -5 1015 900 909 268 75 101 chr1 118955220 118955985 -163237679 - LTR1B LTR ERV1 -81 745 1 1018 177 12 91 chr1 118955989 118956232 -163237432 + MSTB LTR MaLR 79 302 -124 236 244 0 0 chr1 118956355 118956433 -163237231 + L1MC4 LINE L1 6615 6692 -1350 252 0 0 0 chr1 118956436 118956464 -163237200 + (GA)n Simple_repeat Simple_repeat 2 29 0 21 57 0 0 chr1 118956584 118956619 -163237045 + AT_rich Low_complexity Low_complexity 1 35 0 538 104 83 0 chr1 118956813 118956909 -163236755 + L1MB3 LINE L1 6078 6181 -2 273 264 44 22 chr1 118957160 118957251 -163236413 + MLT1H LTR MaLR 454 546 -3 38 22 0 0 chr1 118957639 118957684 -163235980 + AT_rich Low_complexity Low_complexity 1 45 0 324 0 0 0 chr1 118958572 118958608 -163235056 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 985 195 26 0 chr1 118959435 118959630 -163234034 - MLT1C LTR MaLR 0 467 268 34 42 0 0 chr1 118960016 118960064 -163233600 + AT_rich Low_complexity Low_complexity 1 48 0 1350 148 43 12 chr1 118960839 118961095 -163232569 - L1MA8 LINE L1 -17 6274 6011 3117 42 3 0 chr1 118961149 118961530 -163232134 + L1PA3 LINE L1 5769 6150 -5 1390 238 34 3 chr1 118961536 118961914 -163231750 - L1M4 LINE L1 -1503 4643 4254 195 293 0 17 chr1 118964328 118964386 -163229278 + L2 LINE L2 3255 3311 -2 6339 51 2 0 chr1 118964903 118965692 -163227972 + L1PA4 LINE L1 5320 6110 -45 21 36 0 0 chr1 118966883 118966911 -163226753 + AT_rich Low_complexity Low_complexity 1 28 0 2363 93 0 0 chr1 118967748 118968059 -163225605 + AluY SINE Alu 1 311 0 319 263 13 0 chr1 118968064 118968140 -163225524 + MLT1I LTR MaLR 323 399 -10 21 0 0 0 chr1 118968589 118968610 -163225054 + AT_rich Low_complexity Low_complexity 1 21 0 322 336 55 42 chr1 118969131 118969533 -163224131 + MLT1I LTR MaLR 3 409 0 2135 154 30 8 chr1 118969831 118970195 -163223469 + THE1C LTR MaLR 4 375 0 8793 152 42 14 chr1 118970195 118971732 -163221932 + THE1C-int LTR MaLR 1 1580 0 2219 138 27 14 chr1 118971732 118972102 -163221562 + THE1C LTR MaLR 1 375 0 32 26 0 0 chr1 118972258 118972297 -163221367 + AT_rich Low_complexity Low_complexity 1 39 0 184 215 11 11 chr1 118973910 118974003 -163219661 + (TA)n Simple_repeat Simple_repeat 2 94 0 21 36 0 0 chr1 118974290 118974318 -163219346 + AT_rich Low_complexity Low_complexity 1 28 0 2572 109 22 3 chr1 118974707 118975075 -163218589 + THE1C LTR MaLR 1 375 0 821 126 0 0 chr1 118975092 118975219 -163218445 + THE1C-int LTR MaLR 30 156 -1424 310 100 60 0 chr1 118975219 118975269 -163218395 + THE1C-int LTR MaLR 100 152 -1428 333 55 91 0 chr1 118975270 118975325 -163218339 + THE1C-int LTR MaLR 96 155 -1496 257 85 136 0 chr1 118975325 118975384 -163218280 + THE1C-int LTR MaLR 100 166 -1414 280 98 82 16 chr1 118975423 118975484 -163218180 + THE1C-int LTR MaLR 91 155 -1496 * 8030 160 49 10 chr1 118975479 118976895 -163216769 + THE1C-int LTR MaLR 95 1565 -15 4309 249 26 40 chr1 118976890 118978477 -163215187 - L1 LINE L1 -1894 4252 2688 * 4462 190 44 34 chr1 118978549 118980103 -163213561 + L1PA16 LINE L1 4604 6166 0 1570 105 0 4 chr1 118980962 118981200 -163212464 - L1PA13 LINE L1 -4 6159 5923 26 30 0 0 chr1 118981452 118981485 -163212179 + AT_rich Low_complexity Low_complexity 1 33 0 418 309 131 0 chr1 118981967 118982142 -163211522 - MIR SINE MIR 0 262 65 182 273 0 0 chr1 118982261 118982305 -163211359 + L2 LINE L2 3209 3252 -20 28 61 0 0 chr1 118982319 118982368 -163211296 + AT_rich Low_complexity Low_complexity 1 49 0 640 303 20 5 chr1 118982519 118982714 -163210950 + MIR SINE MIR 61 258 -4 203 233 146 48 chr1 118982953 118983056 -163210608 + L2 LINE L2 3180 3292 -21 198 71 0 0 chr1 118984527 118984555 -163209109 + (CA)n Simple_repeat Simple_repeat 2 29 0 379 242 57 6 chr1 118985230 118985387 -163208277 - L1 LINE L1 -3779 2367 2203 2365 243 57 20 chr1 118985391 118986092 -163207572 - L1ME1 LINE L1 -123 6043 5317 24 32 0 0 chr1 118986258 118986289 -163207375 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr1 118986321 118986352 -163207312 + AT_rich Low_complexity Low_complexity 1 31 0 1971 202 97 36 chr1 118986392 118986972 -163206692 - L1MA7 LINE L1 0 6291 5677 494 246 86 4 chr1 118986994 118987238 -163206426 - L1ME1 LINE L1 -3142 3004 2741 2072 191 34 24 chr1 118987294 118987758 -163205906 - L1MB2 LINE L1 -21 6150 5679 207 0 0 0 chr1 118987779 118987802 -163205862 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 118987877 118987900 -163205764 + AT_rich Low_complexity Low_complexity 1 23 0 470 338 38 26 chr1 118988581 118988752 -163204912 + L2 LINE L2 2087 2255 -1059 2156 212 20 67 chr1 118988752 118989290 -163204374 - MLT2B2 LTR ERVL 0 515 3 470 338 38 26 chr1 118989290 118989458 -163204206 + L2 LINE L2 2255 2430 -884 363 272 61 18 chr1 118989455 118989569 -163204095 - L2 LINE L2 -1 3312 3194 * 25 51 0 0 chr1 118989971 118990010 -163203654 + AT_rich Low_complexity Low_complexity 1 39 0 322 314 157 22 chr1 118990123 118990346 -163203318 - MLT1J LTR MaLR -174 337 85 447 63 0 0 chr1 118990499 118990562 -163203102 + (TATG)n Simple_repeat Simple_repeat 2 64 0 1992 129 0 3 chr1 118990562 118990851 -163202813 - AluSq SINE Alu -25 288 1 2277 143 57 7 chr1 118991377 118991783 -163201881 - MSTA LTR MaLR -2 426 1 1340 135 5 14 chr1 118992162 118992370 -163201294 + AluSg/x SINE Alu 99 304 -6 1914 70 0 0 chr1 118992610 118992852 -163200812 + AluY SINE Alu 47 288 -23 410 323 143 20 chr1 118993016 118993310 -163200354 + HAL1b LINE L1 115 444 -904 21 0 0 0 chr1 118993947 118993968 -163199696 + AT_rich Low_complexity Low_complexity 1 21 0 1078 253 111 11 chr1 118994407 118994767 -163198897 + MSTD LTR MaLR 1 396 0 345 24 0 0 chr1 118995452 118995494 -163198170 + (TC)n Simple_repeat Simple_repeat 1 42 0 288 0 0 0 chr1 118995493 118995525 -163198139 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 258 136 0 0 chr1 118995805 118995849 -163197815 + (CA)n Simple_repeat Simple_repeat 2 45 0 492 334 38 34 chr1 118996584 118996904 -163196760 + L1MC1 LINE L1 317 637 -5759 539 210 32 146 chr1 118996968 118997116 -163196548 - MER20 DNA MER1_type -24 195 78 2331 77 0 3 chr1 118997116 118997413 -163196251 + AluY SINE Alu 1 296 -15 539 210 32 146 chr1 118997413 118997483 -163196181 - MER20 DNA MER1_type -141 78 2 885 312 62 45 chr1 118997487 118998366 -163195298 + L1MC1 LINE L1 635 1495 -4720 318 75 0 0 chr1 118998390 118998469 -163195195 - AluSg SINE Alu 0 321 243 1170 125 62 0 chr1 118998469 118998645 -163195019 - AluSg SINE Alu -123 187 1 337 265 39 28 chr1 118998675 118998856 -163194808 + L1MC1 LINE L1 1598 1780 -4616 38 39 0 0 chr1 118998888 118998940 -163194724 + AT_rich Low_complexity Low_complexity 1 52 0 581 257 34 6 chr1 118999251 118999426 -163194238 + L1MC1 LINE L1 3584 3763 -2452 533 261 23 69 chr1 118999460 118999720 -163193944 + L1MC1 LINE L1 3976 4223 -1992 297 231 0 13 chr1 118999755 118999833 -163193831 + GA-rich Low_complexity Low_complexity 1 77 0 4667 206 35 23 chr1 118999944 119001268 -163192396 + L1MC1 LINE L1 5011 6350 -52 23 0 0 0 chr1 119001400 119001423 -163192241 + AT_rich Low_complexity Low_complexity 1 23 0 367 143 0 0 chr1 119001428 119001498 -163192166 - L1MA3 LINE L1 0 6305 6236 1518 260 52 21 chr1 119001517 119002097 -163191567 + L1MEc LINE L1 4687 5284 -931 427 306 51 6 chr1 119002159 119002316 -163191348 - MIR SINE MIR -13 249 86 2468 68 0 0 chr1 119002973 119003280 -163190384 + AluY SINE Alu 1 307 -4 1717 158 7 18 chr1 119004281 119004565 -163189099 + AluSx SINE Alu 1 281 -31 180 0 0 0 chr1 119004568 119004588 -163189076 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 300 315 108 0 chr1 119004656 119004786 -163188878 - L2 LINE L2 -1 3312 3169 221 290 130 38 chr1 119005352 119005483 -163188181 + MIR SINE MIR 15 157 -105 * 341 279 36 9 chr1 119005482 119005593 -163188071 + L2 LINE L2 3195 3308 -5 2277 157 31 14 chr1 119006181 119006602 -163187062 - MSTA LTR MaLR 0 428 1 8144 207 17 16 chr1 119006614 119008245 -163185419 - MSTA-int LTR MaLR -18 1633 1 2665 147 12 0 chr1 119008245 119008668 -163184996 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr1 119008770 119008792 -163184872 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 119008812 119008846 -163184818 + AT_rich Low_complexity Low_complexity 1 34 0 35 92 0 0 chr1 119008874 119008972 -163184692 + AT_rich Low_complexity Low_complexity 1 98 0 1397 231 82 14 chr1 119009434 119009973 -163183691 + L1M2 LINE L1 1775 2346 -4503 576 224 131 13 chr1 119009974 119010372 -163183292 - L1 LINE L1 -3728 3837 3387 242 71 98 18 chr1 119010372 119010484 -163183180 + (TA)n Simple_repeat Simple_repeat 1 121 0 8053 235 63 15 chr1 119010495 119010781 -163182883 + L1M2 LINE L1 2772 3043 -4522 2470 36 0 3 chr1 119010781 119011086 -163182578 + L1PA2 LINE L1 5851 6154 -1 8053 235 63 15 chr1 119011086 119013784 -163179880 + L1M2 LINE L1 3043 5901 -1664 1037 172 15 33 chr1 119013785 119014082 -163179582 + L1M2 LINE L1 6576 6870 -764 470 295 2 0 chr1 119014137 119014271 -163179393 - MER5A DNA MER1_type -12 166 31 623 225 165 34 chr1 119014284 119014511 -163179153 - MLT1D LTR MaLR -57 448 188 324 102 0 0 chr1 119014511 119014560 -163179104 + (CA)n Simple_repeat Simple_repeat 1 49 0 629 168 0 0 chr1 119014582 119014689 -163178975 - MLT1D LTR MaLR -260 245 139 21 0 0 0 chr1 119015719 119015740 -163177924 + AT_rich Low_complexity Low_complexity 1 21 0 274 217 14 14 chr1 119015976 119016045 -163177619 + AluY SINE Alu 68 136 -165 42 65 0 0 chr1 119016077 119016154 -163177510 + AT_rich Low_complexity Low_complexity 1 77 0 191 261 92 67 chr1 119016345 119016464 -163177200 + L2 LINE L2 3138 3259 -13 2142 127 3 0 chr1 119016596 119016896 -163176768 + AluSx SINE Alu 1 301 -11 252 360 118 7 chr1 119016945 119017081 -163176583 - L2 LINE L2 -8 3264 3114 472 165 24 33 chr1 119017119 119017248 -163176416 + L1M2 LINE L1 5459 5586 -571 368 361 39 70 chr1 119217323 119217653 -162976011 - L2 LINE L2 -50 3222 2903 373 190 0 0 chr1 119217806 119217885 -162975779 + MER116 DNA Mariner 1 79 -1 767 189 37 24 chr1 119218809 119218973 -162974691 - AluJo SINE Alu -23 289 124 464 296 61 0 chr1 119219164 119219296 -162974368 + MIR3 SINE MIR 32 171 -37 199 222 19 74 chr1 119219400 119219454 -162974210 + MER5A DNA MER1_type 138 188 -1 443 297 0 41 chr1 119220124 119220277 -162973387 + MIR SINE MIR 45 190 -51 186 103 0 0 chr1 119220377 119220406 -162973258 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 325 330 92 56 chr1 119220692 119221140 -162972524 - L2 LINE L2 -352 2962 2499 861 273 101 45 chr1 119221258 119221676 -162971988 - L2 LINE L2 -1 3312 2872 2017 139 0 10 chr1 119221685 119222024 -162971640 - AluSx SINE Alu 0 312 1 36 40 0 0 chr1 119222251 119222301 -162971363 + AT_rich Low_complexity Low_complexity 1 50 0 2020 126 21 0 chr1 119223008 119223293 -162970371 + AluSg SINE Alu 3 293 -17 21 36 0 0 chr1 119223432 119223460 -162970204 + AT_rich Low_complexity Low_complexity 1 28 0 694 104 0 0 chr1 119224197 119224336 -162969328 - AluSg/x SINE Alu 0 325 187 587 200 9 0 chr1 119225010 119225120 -162968544 - FLAM_C SINE Alu -32 111 1 285 314 34 8 chr1 119225211 119225329 -162968335 + MIR SINE MIR 31 151 -111 25 0 0 0 chr1 119225591 119225616 -162968048 + AT_rich Low_complexity Low_complexity 1 25 0 646 318 72 8 chr1 119226013 119226249 -162967415 + MLT1J LTR MaLR 177 427 -84 22 0 0 0 chr1 119226396 119226418 -162967246 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 119226479 119226503 -162967161 + AT_rich Low_complexity Low_complexity 1 24 0 315 331 57 32 chr1 119226933 119227090 -162966574 + MIR SINE MIR 23 183 -79 303 364 39 0 chr1 119227593 119227747 -162965917 - MIR SINE MIR -10 252 93 250 275 88 0 chr1 119227834 119227925 -162965739 + MIR3 SINE MIR 105 203 -5 221 276 138 23 chr1 119230328 119230415 -162963249 + MIR SINE MIR 41 137 -125 457 322 38 56 chr1 119230536 119230856 -162962808 + L2 LINE L2 2553 2866 -448 532 268 80 0 chr1 119231319 119231457 -162962207 - MIR SINE MIR 0 262 114 22 70 0 0 chr1 119231636 119231679 -162961985 + AT_rich Low_complexity Low_complexity 1 43 0 2849 155 47 21 chr1 119232628 119233163 -162960501 - MER44D DNA MER2_type -1 604 1 395 345 116 13 chr1 119233532 119233764 -162959900 - HERV16 LTR ERVL -3573 1423 1168 452 263 66 15 chr1 119233992 119234129 -162959535 - HERV16 LTR ERVL -4096 900 757 276 239 45 15 chr1 119234206 119234273 -162959391 - HERV16 LTR ERVL -5168 596 528 744 267 101 0 chr1 119234511 119234728 -162958936 - HERV16 LTR ERVL -4757 239 1 278 214 0 0 chr1 119234730 119234786 -162958878 - LTR16A LTR ERVL -2 448 393 389 248 35 18 chr1 119234796 119234909 -162958755 + LTR16A LTR ERVL 248 362 -88 290 261 80 87 chr1 119234956 119234991 -162958673 - LTR16A LTR ERVL -298 152 118 949 188 32 21 chr1 119234991 119235177 -162958487 - MER5A DNA MER1_type -1 188 1 290 261 80 87 chr1 119235177 119235279 -162958385 - LTR16A LTR ERVL -332 118 16 355 316 105 16 chr1 119235294 119235484 -162958180 + MIR SINE MIR 23 229 -33 * 370 355 125 32 chr1 119235461 119236095 -162957569 + L2 LINE L2 2397 3094 -178 190 279 0 0 chr1 119236283 119236326 -162957338 + MIR SINE MIR 220 262 0 23 54 0 0 chr1 119236519 119236556 -162957108 + AT_rich Low_complexity Low_complexity 1 37 0 660 243 0 14 chr1 119237165 119237313 -162956351 + MLT2F LTR ERVL 1 146 -517 906 52 15 15 chr1 119237341 119237475 -162956189 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 5560 246 61 23 chr1 119237476 119238016 -162955648 + ERVL LTR ERVL 3332 3850 -1914 1826 181 3 0 chr1 119238016 119238314 -162955350 - AluJb SINE Alu -13 299 1 5560 246 61 23 chr1 119238314 119239428 -162954236 + ERVL LTR ERVL 3850 5092 -672 477 209 79 43 chr1 119239428 119239523 -162954141 + MLT2F LTR ERVL 518 621 -42 606 12 36 0 chr1 119239523 119239606 -162954058 + (TCTA)n Simple_repeat Simple_repeat 3 88 0 477 209 79 43 chr1 119239606 119239649 -162954015 + MLT2F LTR ERVL 621 661 -2 1936 143 0 27 chr1 119239664 119239989 -162953675 + AluSx SINE Alu 1 317 0 674 355 24 8 chr1 119242507 119242758 -162950906 + MIR SINE MIR 8 262 0 2276 105 0 7 chr1 119242962 119243267 -162950397 + AluSx SINE Alu 1 303 -9 878 280 114 19 chr1 119243727 119244052 -162949612 - L2 LINE L2 0 3313 2958 31 68 0 0 chr1 119244556 119244615 -162949049 + AT_rich Low_complexity Low_complexity 1 59 0 709 315 0 11 chr1 119245045 119245280 -162948384 - MIR SINE MIR 0 262 32 227 122 73 0 chr1 119245632 119245673 -162947991 + MLT1K LTR MaLR 537 580 -8 184 167 100 50 chr1 119245873 119245933 -162947731 - L3 LINE CR1 -12 1565 1503 485 290 18 47 chr1 119246213 119246382 -162947282 - MIR3 SINE MIR 0 208 45 26 0 0 0 chr1 119247694 119247720 -162945944 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 119248045 119248070 -162945594 + AT_rich Low_complexity Low_complexity 1 25 0 293 319 6 30 chr1 119248844 119249010 -162944654 - L1ME LINE L1 -308 5858 5697 342 0 0 0 chr1 119249836 119249874 -162943790 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 415 296 143 47 chr1 119250002 119250721 -162942943 + L2 LINE L2 1858 2717 -597 201 260 31 94 chr1 119250863 119250990 -162942674 + L2 LINE L2 2922 3040 -232 209 232 54 0 chr1 119251136 119251192 -162942472 + L2 LINE L2 3255 3313 0 276 283 328 0 chr1 119251387 119251564 -162942100 + MIR SINE MIR 28 262 0 204 125 0 0 chr1 119251963 119251995 -162941669 + (A)n Simple_repeat Simple_repeat 1 32 0 244 329 76 0 chr1 119252150 119252229 -162941435 + L2 LINE L2 3100 3184 -88 252 307 168 0 chr1 119252254 119252355 -162941309 + MIR SINE MIR 47 164 -98 983 308 108 18 chr1 119252422 119252774 -162940890 - MLT1H1 LTR MaLR 0 555 165 2021 155 64 45 chr1 119252774 119252999 -162940665 - MSTC LTR MaLR 0 428 190 2237 107 0 10 chr1 119252999 119253307 -162940357 - AluSx SINE Alu -7 305 1 2021 155 64 45 chr1 119253307 119253501 -162940163 - MSTC LTR MaLR -238 190 1 983 308 108 18 chr1 119253501 119253528 -162940136 - MLT1H1 LTR MaLR -390 165 142 1790 169 23 22 chr1 119253536 119254030 -162939634 - L1PA16 LINE L1 -678 5488 4999 3593 124 20 5 chr1 119254030 119254636 -162939028 + L1PA16 LINE L1 5495 6166 0 262 302 107 19 chr1 119254645 119254804 -162938860 - MLT1H1 LTR MaLR -421 174 2 1965 82 67 8 chr1 119256085 119256353 -162937311 - AluSq SINE Alu -18 295 12 2396 129 22 64 chr1 119257220 119257670 -162935994 - Tigger2a DNA MER2_type -1 433 3 2326 109 48 28 chr1 119257897 119258254 -162935410 - THE1B LTR MaLR 0 364 1 250 276 0 66 chr1 119258562 119258638 -162935026 - L2 LINE L2 -2 3311 3241 235 234 0 0 chr1 119258688 119258735 -162934929 + MER63 DNA MER1_type 703 749 -312 276 247 191 11 chr1 119258788 119258877 -162934787 + L2 LINE L2 3207 3311 -2 2523 37 3 0 chr1 119258922 119259217 -162934447 + AluY SINE Alu 1 296 -15 1528 213 73 49 chr1 119259378 119259871 -162933793 - MLT1D LTR MaLR 0 505 1 194 264 19 0 chr1 119260004 119260057 -162933607 + MIR SINE MIR 46 99 -109 2166 103 0 13 chr1 119260529 119260830 -162932834 + AluSg1 SINE Alu 1 297 -12 748 215 31 70 chr1 119262233 119262461 -162931203 + MER20 DNA MER1_type 1 219 0 181 159 14 14 chr1 119262488 119262557 -162931107 + (TA)n Simple_repeat Simple_repeat 1 69 0 180 135 0 0 chr1 119262597 119262634 -162931030 + (TA)n Simple_repeat Simple_repeat 2 38 0 216 227 0 0 chr1 119262865 119262984 -162930680 + (TA)n Simple_repeat Simple_repeat 1 119 0 218 185 12 0 chr1 119263040 119263121 -162930543 + (TA)n Simple_repeat Simple_repeat 1 82 0 2833 69 5 5 chr1 119263223 119263599 -162930065 + L1PA7 LINE L1 5772 6147 -7 244 373 42 48 chr1 119264001 119264256 -162929408 - L2 LINE L2 -634 2680 2428 1180 201 22 114 chr1 119264256 119264658 -162929006 + MLT1A1 LTR MaLR 1 365 0 244 373 42 48 chr1 119264658 119264836 -162928828 - L2 LINE L2 -886 2428 2250 589 227 30 56 chr1 119264837 119265035 -162928629 + LTR40a LTR ERVL 1 193 -326 6270 157 23 12 chr1 119265035 119266147 -162927517 + L1MB3 LINE L1 16 1140 -5244 9703 218 26 20 chr1 119266152 119269672 -162923992 + L1MB3 LINE L1 2865 6408 -11 1095 248 31 31 chr1 119269688 119270006 -162923658 + LTR40a LTR ERVL 184 501 -18 394 134 12 12 chr1 119270159 119270241 -162923423 + CT-rich Low_complexity Low_complexity 1 82 0 1801 173 29 10 chr1 119271884 119272190 -162921474 + AluJb SINE Alu 1 312 0 1806 158 17 3 chr1 119272638 119272930 -162920734 - AluJo SINE Alu -16 296 1 240 306 0 27 chr1 119273659 119273770 -162919894 + HAL1b LINE L1 343 450 -898 240 271 29 0 chr1 119273787 119273857 -162919807 - L2 LINE L2 -1005 2309 2238 449 269 48 0 chr1 119273859 119274004 -162919660 - Charlie8 DNA MER1_type -2203 214 63 316 248 89 82 chr1 119274123 119274393 -162919271 + L1ME LINE L1 4714 4985 -1161 21 0 0 0 chr1 119274407 119274428 -162919236 + AT_rich Low_complexity Low_complexity 1 21 0 495 281 101 26 chr1 119274636 119274910 -162918754 - MLT1H LTR MaLR -218 331 1 2588 146 2 11 chr1 119275082 119275520 -162918144 - L1PB4 LINE L1 -3 6153 5720 247 296 83 59 chr1 119275667 119275920 -162917744 + L1ME LINE L1 5402 5660 -461 21 0 0 0 chr1 119276029 119276050 -162917614 + AT_rich Low_complexity Low_complexity 1 21 0 230 234 16 47 chr1 119276131 119276195 -162917469 - L2 LINE L2 -227 3086 3025 209 70 0 70 chr1 119276769 119276791 -162916873 + (TTTC)n Simple_repeat Simple_repeat 1 20 -20 4924 91 6 4 chr1 119276791 119277487 -162916177 - L1PB1 LINE L1 0 6151 5455 209 70 0 70 chr1 119277487 119277507 -162916157 + (TTTC)n Simple_repeat Simple_repeat 20 40 0 335 252 26 61 chr1 119279315 119279430 -162914234 + MIR SINE MIR 152 262 0 382 298 168 62 chr1 119279496 119279928 -162913736 - L2 LINE L2 -68 3245 2762 504 375 17 17 chr1 119279933 119280221 -162913443 - L2 LINE L2 -662 2652 2365 1126 174 23 41 chr1 119280980 119281199 -162912465 - AluJo SINE Alu -12 300 86 234 338 44 39 chr1 119281517 119281721 -162911943 - L2 LINE L2 -176 3096 2892 291 28 0 0 chr1 119281798 119281834 -162911830 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 119281833 119281855 -162911809 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 2060 93 0 4 chr1 119281873 119282153 -162911511 - AluY SINE Alu -32 279 1 258 114 23 57 chr1 119282225 119282313 -162911351 + CT-rich Low_complexity Low_complexity 3 87 0 1781 140 25 14 chr1 119282313 119282495 -162911169 - AluSx SINE Alu 0 321 142 447 68 0 0 chr1 119282495 119282554 -162911110 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2238 85 0 0 chr1 119282554 119282836 -162910828 - AluSc SINE Alu -27 282 1 1781 140 25 14 chr1 119282836 119282968 -162910696 - AluSx SINE Alu -178 143 3 49 32 0 0 chr1 119282977 119283040 -162910624 + AT_rich Low_complexity Low_complexity 1 63 0 541 175 29 10 chr1 119283167 119283270 -162910394 + AluJo SINE Alu 30 134 -178 370 319 84 18 chr1 119283999 119284331 -162909333 + L1MC/D LINE L1 5258 5611 -2197 21 0 0 0 chr1 119284530 119284551 -162909113 + AT_rich Low_complexity Low_complexity 1 21 0 430 349 87 13 chr1 119284859 119285237 -162908427 + LTR16C LTR ERVL 86 491 0 557 310 98 0 chr1 119285286 119285470 -162908194 + MIR SINE MIR 46 247 -15 21 0 0 0 chr1 119286194 119286215 -162907449 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 119286408 119286436 -162907228 + AT_rich Low_complexity Low_complexity 1 28 0 44 63 0 0 chr1 119286626 119286705 -162906959 + AT_rich Low_complexity Low_complexity 1 79 0 21 71 0 0 chr1 119287655 119287697 -162905967 + AT_rich Low_complexity Low_complexity 1 42 0 1680 170 0 14 chr1 119287716 119288004 -162905660 - AluJo SINE Alu -24 288 5 3995 132 36 0 chr1 119289297 119289927 -162903737 + MER39B LTR ERV1 1 653 0 2502 60 0 0 chr1 119290577 119290876 -162902788 - AluY SINE Alu -8 303 5 200 286 13 26 chr1 119290952 119291029 -162902635 + MIR SINE MIR 70 145 -63 248 262 78 48 chr1 119291123 119291226 -162902438 + L2 LINE L2 3208 3313 0 811 235 70 58 chr1 119291625 119291868 -162901796 - MIR SINE MIR -14 248 3 225 0 0 0 chr1 119292835 119292860 -162900804 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2340 65 10 0 chr1 119295365 119295672 -162897992 - AluSp SINE Alu -3 310 1 312 341 0 0 chr1 119295863 119295948 -162897716 + MIR SINE MIR 45 129 -79 797 198 29 17 chr1 119296597 119296769 -162896895 + MER5B DNA MER1_type 5 178 0 651 300 178 16 chr1 119297140 119297815 -162895849 + L2 LINE L2 2517 3308 -5 255 250 114 15 chr1 119298274 119298390 -162895274 - MER112 DNA MER1_type -43 217 85 2219 84 0 0 chr1 119298390 119298664 -162895000 + AluSc SINE Alu 12 285 -24 255 250 114 15 chr1 119298664 119298679 -162894985 - MER112 DNA MER1_type -175 85 73 26 0 0 0 chr1 119299383 119299409 -162894255 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr1 119299610 119299635 -162894029 + AT_rich Low_complexity Low_complexity 1 25 0 278 164 0 0 chr1 119300278 119300333 -162893331 - L1MA3 LINE L1 0 6305 6251 2734 89 18 0 chr1 119300348 119300728 -162892936 - L1PA10 LINE L1 -5 6163 5777 6787 114 9 28 chr1 119300728 119301884 -162891780 + L1P4 LINE L1 4213 5342 -826 2439 81 0 0 chr1 119301884 119302192 -162891472 + AluY SINE Alu 1 308 -3 6787 114 9 28 chr1 119302192 119302614 -162891050 + L1P4 LINE L1 5342 5770 -398 754 258 11 6 chr1 119302718 119302900 -162890764 + MER5A DNA MER1_type 3 185 -4 1001 196 75 114 chr1 119302987 119303506 -162890158 - MLT1E3 LTR MaLR -2 622 156 1797 123 37 113 chr1 119303642 119304049 -162889615 + MER51B LTR ERV1 2 377 0 2227 137 50 48 chr1 119304416 119304876 -162888788 + LOR1b LTR ERV1 1 461 0 264 279 70 29 chr1 119304884 119305056 -162888608 - L1ME3A LINE L1 -94 6076 5898 308 306 63 0 chr1 119305057 119305168 -162888496 - L1ME3A LINE L1 -310 5860 5743 219 329 26 0 chr1 119305312 119305388 -162888276 - MIR SINE MIR 0 262 185 323 307 120 7 chr1 119305391 119305541 -162888123 - L2 LINE L2 0 3313 3147 3655 162 81 114 chr1 119305557 119307497 -162886167 - pTR5 LTR ERV1 0 2438 375 290 79 0 0 chr1 119307497 119307535 -162886129 - Alu SINE Alu -23 279 242 194 254 85 17 chr1 119307540 119307599 -162886065 - MIR SINE MIR -95 167 105 206 306 61 10 chr1 119307758 119307856 -162885808 - MIR SINE MIR -73 189 87 331 171 0 11 chr1 119307860 119307936 -162885728 - L1ME1 LINE L1 -308 5858 5794 268 313 71 0 chr1 119308210 119308309 -162885355 - L2 LINE L2 -21 3251 3146 380 82 16 0 chr1 119308712 119308773 -162884891 + (TG)n Simple_repeat Simple_repeat 2 63 0 329 315 30 42 chr1 119309744 119309909 -162883755 - MER5B DNA MER1_type -11 167 5 39 0 0 0 chr1 119309973 119310012 -162883652 + AT_rich Low_complexity Low_complexity 1 39 0 356 302 144 32 chr1 119310419 119310697 -162882967 - L2 LINE L2 0 3313 3005 359 267 49 31 chr1 119310788 119311102 -162882562 - HAL1 LINE L1 -1444 1063 549 1566 133 27 55 chr1 119311123 119311453 -162882211 - THE1B LTR MaLR -43 321 1 11030 145 7 1 chr1 119311453 119313022 -162880642 - THE1B-int LTR MaLR -1 1579 1 1963 123 24 54 chr1 119313024 119313397 -162880267 - THE1B LTR MaLR -2 362 1 436 256 148 31 chr1 119313425 119313648 -162880016 - HAL1 LINE L1 -2134 373 125 297 75 0 0 chr1 119313648 119313688 -162879976 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 209 188 42 0 chr1 119313716 119313764 -162879900 + A-rich Low_complexity Low_complexity 4 53 0 411 261 109 0 chr1 119313869 119313988 -162879676 - MIR SINE MIR -73 189 58 22 0 0 0 chr1 119314402 119314424 -162879240 + AT_rich Low_complexity Low_complexity 1 22 0 1305 235 8 32 chr1 119314934 119315313 -162878351 + MLT1A2 LTR MaLR 1 370 -4 2308 192 13 7 chr1 119315748 119316206 -162877458 + LOR1b LTR ERV1 1 461 0 1913 197 6 6 chr1 119317181 119317546 -162876118 + MLT1A1 LTR MaLR 1 365 0 1497 302 32 13 chr1 119317606 119318231 -162875433 - L1MC4a LINE L1 -1908 5900 5264 187 176 0 0 chr1 119318463 119318497 -162875167 - L2 LINE L2 0 3313 3280 2181 198 30 0 chr1 119318506 119318901 -162874763 + MER47B DNA MER2_type 2 408 -10 5044 299 125 47 chr1 119318918 119320682 -162872982 - L2 LINE L2 -48 3265 1639 1820 193 11 30 chr1 119320682 119321050 -162872614 - MLT1A1 LTR MaLR -2 363 3 5044 299 125 47 chr1 119321050 119321698 -162871966 - L2 LINE L2 -1674 1639 1043 2012 169 5 56 chr1 119321698 119322107 -162871557 + MLT1B LTR MaLR 1 388 -2 5044 299 125 47 chr1 119322107 119322651 -162871013 - L2 LINE L2 -2270 1043 79 3316 110 30 0 chr1 119323603 119324101 -162869563 - LTR10D LTR ERV1 0 513 1 288 223 27 9 chr1 119324565 119324677 -162868987 + (TA)n Simple_repeat Simple_repeat 1 114 0 366 366 139 38 chr1 119324985 119325026 -162868638 - L2 LINE L2 -669 2645 2610 872 230 5 0 chr1 119325026 119325213 -162868451 + MER5A DNA MER1_type 1 188 -1 366 366 139 38 chr1 119325213 119325876 -162867788 - L2 LINE L2 -704 2610 1870 877 264 29 26 chr1 119325925 119326235 -162867429 + L1MC3 LINE L1 3 313 -5732 2019 218 27 0 chr1 119326299 119326712 -162866952 - LTR53 LTR ERVL 0 519 96 1806 198 77 60 chr1 119326712 119326835 -162866829 + MER74A LTR ERVL 1 120 -438 2198 115 7 0 chr1 119326835 119327140 -162866524 - AluSc SINE Alu -2 307 1 1806 198 77 60 chr1 119327140 119327536 -162866128 + MER74A LTR ERVL 120 529 -29 400 185 0 0 chr1 119327573 119327638 -162866026 - LTR53 LTR ERVL -426 93 29 5722 224 65 9 chr1 119327640 119329400 -162864264 + L1MC3 LINE L1 4011 5860 -743 202 167 15 15 chr1 119329412 119329478 -162864186 + A-rich Low_complexity Low_complexity 5 70 0 10062 172 20 18 chr1 119329509 119332273 -162861391 + L1PB2 LINE L1 2995 5758 -393 2248 39 95 3 chr1 119332273 119332557 -162861107 + AluY SINE Alu 1 310 -1 10062 172 20 18 chr1 119332557 119332945 -162860719 + L1PB2 LINE L1 5758 6144 -7 1312 198 58 17 chr1 119332994 119333014 -162860650 + L1MC3 LINE L1 6262 6280 -1923 1818 174 25 16 chr1 119333014 119333377 -162860287 + MER47A DNA MER2_type 1 366 0 1312 198 58 17 chr1 119333377 119333700 -162859964 + L1MC3 LINE L1 6280 6619 -1584 1444 66 5 50 chr1 119333723 119333921 -162859743 + AluY SINE Alu 1 189 -122 216 97 0 0 chr1 119334030 119334061 -162859603 + (GGGGA)n Simple_repeat Simple_repeat 5 35 0 1709 254 118 31 chr1 119334271 119334330 -162859334 - HAL1 LINE L1 -995 1512 1460 207 0 0 0 chr1 119334330 119334353 -162859311 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1709 254 118 31 chr1 119334353 119335129 -162858535 - HAL1 LINE L1 -1047 1460 604 545 354 95 0 chr1 119335139 119335382 -162858282 - HAL1 LINE L1 -2222 285 20 273 271 10 21 chr1 119335565 119335661 -162858003 + L1MC5 LINE L1 7816 7910 -51 2351 84 3 0 chr1 119336201 119336497 -162857167 - AluSp SINE Alu -16 297 1 2353 60 47 3 chr1 119336755 119337053 -162856611 - AluY SINE Alu 0 311 1 2049 114 7 0 chr1 119337055 119337353 -162856311 - AluSp SINE Alu -13 300 1 409 315 33 33 chr1 119337626 119337810 -162855854 + MER20B DNA MER1_type 2 185 -598 23 54 0 0 chr1 119338065 119338102 -162855562 + AT_rich Low_complexity Low_complexity 1 37 0 925 222 37 23 chr1 119338255 119338471 -162855193 - MER20 DNA MER1_type 0 219 1 2788 167 49 16 chr1 119341002 119341494 -162852170 + MLT2B2 LTR ERVL 3 510 -5 438 237 0 11 chr1 119341494 119341587 -162852077 - MER44D DNA MER2_type 0 609 518 210 197 0 66 chr1 119341587 119341648 -162852016 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 1597 186 14 0 chr1 119341724 119342020 -162851644 + MER47A DNA MER2_type 65 364 -2 236 108 0 0 chr1 119342024 119342061 -162851603 - MER44D DNA MER2_type -90 519 483 * 2565 159 15 34 chr1 119342058 119342523 -162851141 - MER44D DNA MER2_type -94 511 1 659 121 0 0 chr1 119342614 119342713 -162850951 + AluS SINE Alu 1 99 -214 463 250 92 74 chr1 119344081 119344517 -162849147 + L1ME LINE L1 2230 2679 -3747 23 78 0 0 chr1 119344833 119344884 -162848780 + AT_rich Low_complexity Low_complexity 1 51 0 391 312 69 15 chr1 119344994 119345196 -162848468 + L1ME LINE L1 5545 5757 -2331 315 214 42 24 chr1 119345229 119345312 -162848352 + L1ME LINE L1 5760 5845 -597 270 315 45 9 chr1 119345855 119345966 -162847698 + LTR67 LTR ERVL 435 549 -8 255 293 66 9 chr1 119345970 119346076 -162847588 + L1ME LINE L1 5895 6006 -436 815 344 118 31 chr1 119346279 119347072 -162846592 + L2 LINE L2 2150 3019 -253 696 243 99 45 chr1 119347151 119347595 -162846069 - L1MC5 LINE L1 -232 7729 7262 337 218 14 82 chr1 119347686 119347833 -162845831 - L1MC4 LINE L1 -699 7262 7126 333 301 19 0 chr1 119347809 119347912 -162845752 - L1MC5 LINE L1 -861 7100 6996 * 1382 233 44 34 chr1 119347913 119348320 -162845344 - LTR52 LTR ERVL -5 416 6 418 318 8 0 chr1 119348371 119348497 -162845167 - LTR52-int LTR ERVL -2427 3258 3132 583 250 20 14 chr1 119348505 119348653 -162845011 - LTR52-int LTR ERVL -1993 1563 1415 1427 248 86 50 chr1 119348715 119349158 -162844506 - MLT1E LTR MaLR -125 468 10 1047 294 31 28 chr1 119349215 119349575 -162844089 - L1MEc LINE L1 -6001 395 35 28 29 0 0 chr1 119349705 119349740 -162843924 + AT_rich Low_complexity Low_complexity 1 35 0 615 261 70 4 chr1 119349879 119350109 -162843555 - L1ME4a LINE L1 -240 5881 5637 569 306 65 0 chr1 119350538 119350724 -162842940 + MIR SINE MIR 41 238 -24 1530 250 46 23 chr1 119351101 119351533 -162842131 + MER70A LTR ERVL 4 445 -27 6941 51 0 0 chr1 119351709 119352575 -162841089 - L1PA5 LINE L1 -896 5250 4385 7135 36 1 49 chr1 119352578 119353519 -162840145 + L1PA5 LINE L1 5254 6149 -5 6190 184 41 28 chr1 119353523 119353610 -162840054 - L1MC3 LINE L1 -16 7769 7685 3171 161 33 56 chr1 119353610 119354269 -162839395 + MER73 LTR ERVL 1 644 0 6190 184 41 28 chr1 119354269 119355509 -162838155 - L1MC3 LINE L1 -100 7685 6425 21 57 0 0 chr1 119355774 119355809 -162837855 + AT_rich Low_complexity Low_complexity 1 35 0 829 329 111 0 chr1 119356150 119356545 -162837119 + L2 LINE L2 2863 3301 -12 22 0 0 0 chr1 119357053 119357075 -162836589 + AT_rich Low_complexity Low_complexity 1 22 0 1967 118 10 28 chr1 119358012 119358331 -162835333 - AluSx SINE Alu 0 314 1 197 373 34 25 chr1 119358416 119358534 -162835130 - MIR SINE MIR -61 147 29 958 171 39 25 chr1 119359069 119359371 -162834293 + THE1C LTR MaLR 1 375 0 2825 45 3 8 chr1 119359683 119360038 -162833626 - L1PA4 LINE L1 -8 6147 5795 4121 56 4 0 chr1 119360228 119360748 -162832916 - L1PA7 LINE L1 -2 6152 5631 581 119 0 0 chr1 119360748 119360832 -162832832 - AluS SINE Alu -229 84 1 345 100 0 100 chr1 119361340 119361410 -162832254 - Charlie5 DNA MER1_type 0 2623 2561 1152 259 102 30 chr1 119361595 119361989 -162831675 + MER77 LTR ERV1 177 598 -7 652 113 27 13 chr1 119362139 119362289 -162831375 - Charlie5 DNA MER1_type -88 2524 2373 194 234 0 39 chr1 119362662 119362739 -162830925 + CT-rich Low_complexity Low_complexity 1 74 0 839 219 30 50 chr1 119362811 119363012 -162830652 + MER20 DNA MER1_type 23 219 0 295 370 59 0 chr1 119363133 119363268 -162830396 - MIR SINE MIR -1 261 119 234 0 0 0 chr1 119363372 119363398 -162830266 + (TA)n Simple_repeat Simple_repeat 1 26 0 2213 139 65 3 chr1 119363399 119363751 -162829913 - LTR57 LTR ERVL -37 374 1 722 298 165 11 chr1 119364044 119364407 -162829257 + LTR16C LTR ERVL 72 490 -1 245 314 58 12 chr1 119365041 119365127 -162828537 + L3 LINE CR1 249 338 -1239 2168 83 14 0 chr1 119365356 119365646 -162828018 + AluY SINE Alu 1 294 -17 29 60 0 0 chr1 119365790 119365840 -162827824 + AT_rich Low_complexity Low_complexity 1 50 0 569 261 190 0 chr1 119367305 119367500 -162826164 - MIR SINE MIR -10 252 21 1600 182 37 10 chr1 119367501 119367797 -162825867 - AluJo SINE Alu -8 304 1 2778 180 22 38 chr1 119367888 119368210 -162825454 - MLT2B3 LTR ERVL -14 540 214 351 0 0 0 chr1 119368210 119368249 -162825415 + (CA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr1 119368248 119368270 -162825394 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 2778 180 22 38 chr1 119368249 119368496 -162825168 - MLT2B3 LTR ERVL -340 214 1 311 287 153 13 chr1 119368584 119368734 -162824930 + MIR SINE MIR 11 181 -81 670 237 43 63 chr1 119368930 119369137 -162824527 - MIR SINE MIR -58 204 2 23 0 0 0 chr1 119370402 119370425 -162823239 + AT_rich Low_complexity Low_complexity 1 23 0 1834 188 5 47 chr1 119370924 119371308 -162822356 - MER99 DNA DNA -251 577 210 25 31 0 0 chr1 119371617 119371649 -162822015 + AT_rich Low_complexity Low_complexity 1 32 0 31 58 0 0 chr1 119371753 119371805 -162821859 + AT_rich Low_complexity Low_complexity 1 52 0 451 265 0 0 chr1 119371982 119372084 -162821580 - MER99 DNA DNA -725 103 2 233 236 14 14 chr1 119372211 119372283 -162821381 + (CATA)n Simple_repeat Simple_repeat 3 74 0 227 234 0 0 chr1 119472755 119472802 -162720862 - MIR SINE MIR 0 262 216 534 250 8 16 chr1 119473102 119473226 -162720438 - MLT1J LTR MaLR -318 193 71 355 231 123 15 chr1 119473257 119473387 -162720277 - MIR SINE MIR -28 234 91 1264 111 31 40 chr1 119473493 119473718 -162719946 - L1MB7 LINE L1 -54 6130 5908 250 256 0 0 chr1 119473723 119473813 -162719851 - L1MC4 LINE L1 -1339 6703 6614 2170 118 0 13 chr1 119473814 119474120 -162719544 - AluSq SINE Alu -10 303 2 3436 156 22 35 chr1 119474120 119474795 -162718869 - L1MB7 LINE L1 -264 5920 5255 436 255 208 0 chr1 119475053 119475202 -162718462 - MER5A DNA MER1_type 0 189 10 532 283 88 25 chr1 119475291 119475516 -162718148 + MIR SINE MIR 18 254 -8 369 326 38 0 chr1 119475880 119476012 -162717652 - MIR SINE MIR -6 256 120 302 328 134 15 chr1 119476054 119476255 -162717409 + MIR SINE MIR 19 243 -19 345 220 33 22 chr1 119476296 119476387 -162717277 - MIR SINE MIR -154 108 17 568 197 150 0 chr1 119476743 119476870 -162716794 - MER69 DNA AcHobo -1080 146 1 23 33 0 0 chr1 119477054 119477084 -162716580 + AT_rich Low_complexity Low_complexity 1 30 0 377 335 62 19 chr1 119478391 119478552 -162715112 - L2 LINE L2 -21 3292 3125 579 332 109 44 chr1 119478792 119479135 -162714529 - L2 LINE L2 -435 2879 2560 2302 181 14 12 chr1 119479135 119479560 -162714104 - MSTB LTR MaLR 0 426 1 579 332 109 44 chr1 119479560 119479846 -162713818 - L2 LINE L2 -754 2560 2209 232 291 213 0 chr1 119480146 119480390 -162713274 - L2 LINE L2 -1289 2025 1730 189 0 0 0 chr1 119481564 119481585 -162712079 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 279 54 0 0 chr1 119481665 119481702 -162711962 + (CA)n Simple_repeat Simple_repeat 1 37 0 694 268 87 17 chr1 119485064 119485295 -162708369 + MIR SINE MIR 3 249 -13 223 283 0 17 chr1 119485314 119485374 -162708290 - L3 LINE CR1 -151 1426 1368 216 336 115 0 chr1 119485432 119485536 -162708128 - L3 LINE CR1 -354 1223 1108 213 205 0 0 chr1 119485603 119485642 -162708022 + (CA)n Simple_repeat Simple_repeat 2 40 0 964 9 0 0 chr1 119485834 119485943 -162707721 + L1PA2 LINE L1 6043 6151 -4 196 327 91 0 chr1 119486458 119486568 -162707096 - L3 LINE CR1 -821 756 637 366 234 149 14 chr1 119486726 119486867 -162706797 - MER103 DNA DNA -3 163 4 285 326 70 57 chr1 119486973 119487200 -162706464 - L3 LINE CR1 -1138 439 210 452 337 32 26 chr1 119487223 119487413 -162706251 - MIR SINE MIR -36 226 36 758 219 73 36 chr1 119488000 119488219 -162705445 - MIR SINE MIR 0 262 36 2319 100 0 3 chr1 119488299 119488598 -162705066 - AluSq SINE Alu -15 298 1 815 241 36 18 chr1 119489057 119489281 -162704383 - MER46C DNA MER2_type -32 306 79 27 49 0 0 chr1 119489315 119489356 -162704308 + AT_rich Low_complexity Low_complexity 1 41 0 784 251 62 13 chr1 119489399 119489626 -162704038 + MIR SINE MIR 1 238 -24 2068 127 24 0 chr1 119490975 119491266 -162702398 + AluSx SINE Alu 1 298 -14 362 252 87 10 chr1 119491367 119491470 -162702194 + MIR3 SINE MIR 91 201 -7 483 249 68 68 chr1 119491565 119491742 -162701922 + MER69A DNA AcHobo 1 177 0 207 323 21 54 chr1 119492130 119492223 -162701441 - L2 LINE L2 -16 3297 3208 559 263 124 18 chr1 119493919 119494136 -162699528 - MIR SINE MIR -2 260 21 502 312 142 41 chr1 119494253 119494471 -162699193 - MIR SINE MIR -21 241 2 207 0 0 0 chr1 119495031 119495054 -162698610 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 119496157 119496180 -162697484 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr1 119497065 119497095 -162696569 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 257 314 0 0 chr1 119499927 119499997 -162693667 - MIR SINE MIR -119 143 74 239 71 24 0 chr1 119500652 119500694 -162692970 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1626 109 0 18 chr1 119500699 119500928 -162692736 - AluY SINE Alu -6 305 81 22 35 0 0 chr1 119500986 119501015 -162692649 + AT_rich Low_complexity Low_complexity 1 29 0 494 214 243 35 chr1 119502258 119502431 -162691233 - MIR SINE MIR -6 256 48 397 325 92 12 chr1 119502970 119503133 -162690531 - MIR3 SINE MIR -1 207 32 29 47 0 0 chr1 119504154 119504197 -162689467 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr1 119504221 119504249 -162689415 + AT_rich Low_complexity Low_complexity 1 28 0 230 176 33 11 chr1 119506718 119506809 -162686855 + CT-rich Low_complexity Low_complexity 1 93 0 201 176 0 0 chr1 119506946 119506980 -162686684 + A-rich Low_complexity Low_complexity 1 34 0 1116 121 31 67 chr1 119510790 119511014 -162682650 + MER20 DNA MER1_type 2 217 -2 1472 259 224 31 chr1 119511483 119512578 -162681086 - L2 LINE L2 0 3313 2016 375 333 28 14 chr1 119512592 119512733 -162680931 - L2 LINE L2 -2047 1267 1125 5395 188 18 12 chr1 119512742 119514751 -162678913 - L1PB4 LINE L1 -14 6142 4125 280 239 94 69 chr1 119514752 119514911 -162678753 - L2 LINE L2 -2174 1140 978 22 35 0 0 chr1 119516973 119517002 -162676662 + AT_rich Low_complexity Low_complexity 1 29 0 203 190 0 86 chr1 119517016 119517074 -162676590 + L2 LINE L2 3248 3300 -13 237 33 0 0 chr1 119517074 119517104 -162676560 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 271 297 30 20 chr1 119519636 119519737 -162673927 + MIR SINE MIR 16 117 -91 206 289 0 84 chr1 119519813 119519896 -162673768 - MIR SINE MIR -71 191 116 23 54 0 0 chr1 119520264 119520301 -162673363 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 119520656 119520677 -162672987 + AT_rich Low_complexity Low_complexity 1 21 0 2067 123 3 19 chr1 119520805 119521114 -162672550 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr1 119522799 119522827 -162670837 + AT_rich Low_complexity Low_complexity 1 28 0 1136 188 62 10 chr1 119525140 119525448 -162668216 - MER33 DNA MER1_type 0 324 1 245 301 143 82 chr1 119526494 119526773 -162666891 - L2 LINE L2 0 3272 2977 267 31 0 0 chr1 119526818 119526850 -162666814 + (TG)n Simple_repeat Simple_repeat 1 32 0 289 330 9 9 chr1 119526973 119527085 -162666579 - L2 LINE L2 -546 2768 2657 545 280 97 14 chr1 119527896 119528103 -162665561 + MIR SINE MIR 22 245 -17 815 224 44 10 chr1 119529082 119529289 -162664375 - MLT1D LTR MaLR -315 190 1 424 314 245 29 chr1 119530057 119530653 -162663011 + L3 LINE CR1 832 1556 -21 256 270 158 33 chr1 119532749 119532901 -162660763 + MIR3 SINE MIR 31 201 -7 281 269 256 6 chr1 119532974 119533130 -162660534 - MIR SINE MIR 0 262 68 1677 173 44 3 chr1 119533231 119533549 -162660115 - MER58B DNA MER1_type 0 341 11 202 226 19 0 chr1 119535430 119535483 -162658181 + (TTCA)n Simple_repeat Simple_repeat 1 54 0 330 313 134 0 chr1 119535487 119535599 -162658065 - L2 LINE L2 -2 3270 3144 180 281 16 16 chr1 119535699 119535763 -162657901 - MIR3 SINE MIR -6 202 139 453 245 135 25 chr1 119535805 119535968 -162657696 - MIR SINE MIR -1 261 81 582 214 214 7 chr1 119535982 119536127 -162657537 + MER5A DNA MER1_type 12 186 -3 23 0 0 0 chr1 119536431 119536454 -162657210 + AT_rich Low_complexity Low_complexity 1 23 0 379 257 29 37 chr1 119536820 119536956 -162656708 - MER5B DNA MER1_type -41 137 3 284 314 65 8 chr1 119537859 119537983 -162655681 + MIR SINE MIR 117 247 -15 231 114 0 0 chr1 119538632 119538667 -162654997 + (T)n Simple_repeat Simple_repeat 1 35 0 588 258 76 5 chr1 119539533 119539731 -162653933 + MIR SINE MIR 51 262 0 2749 148 11 9 chr1 119539970 119540424 -162653240 + MSTB2 LTR MaLR 3 457 0 24 32 0 0 chr1 119541267 119541298 -162652366 + AT_rich Low_complexity Low_complexity 1 31 0 516 263 69 13 chr1 119541311 119541509 -162652155 - MIR SINE MIR -28 234 30 310 331 62 14 chr1 119542308 119542453 -162651211 - MIR SINE MIR -63 199 48 2336 100 0 0 chr1 119542605 119542906 -162650758 - AluSq SINE Alu -12 301 1 31 26 0 0 chr1 119545168 119545206 -162648458 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr1 119546566 119546590 -162647074 + AT_rich Low_complexity Low_complexity 1 24 0 185 262 24 48 chr1 119548313 119548397 -162645267 - MER5A DNA MER1_type -21 168 87 944 312 66 28 chr1 119548604 119549070 -162644594 - L2 LINE L2 -1 3271 2762 2299 89 20 3 chr1 119549070 119549374 -162644290 - AluSc SINE Alu 0 309 1 944 312 66 28 chr1 119549374 119549609 -162644055 - L2 LINE L2 -510 2762 2537 597 303 124 5 chr1 119549839 119550057 -162643607 + MIR SINE MIR 6 249 -13 372 353 30 12 chr1 119550352 119550519 -162643145 - MIR SINE MIR -69 193 24 236 241 17 0 chr1 119552935 119552993 -162640671 - L2 LINE L2 -86 3227 3169 465 230 24 48 chr1 119553899 119554025 -162639639 - L2 LINE L2 0 3313 3191 210 214 0 0 chr1 119554967 119555009 -162638655 + MIR SINE MIR 206 247 -15 * 285 260 189 59 chr1 119554980 119555149 -162638515 - MIR SINE MIR -33 229 39 2356 87 0 7 chr1 119556358 119556658 -162637006 + AluSg SINE Alu 1 298 -12 1557 126 122 8 chr1 119556997 119557296 -162636368 - AluSx SINE Alu 0 328 1 224 339 0 15 chr1 119557307 119557372 -162636292 - L2 LINE L2 -18 3295 3232 240 270 33 65 chr1 119557894 119558109 -162635555 - L1ME4a LINE L1 -33 6088 5881 383 239 57 75 chr1 119559506 119559665 -162633999 - MIR SINE MIR -67 195 40 192 40 0 0 chr1 119560265 119560290 -162633374 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 355 251 82 49 chr1 119561966 119562091 -162631573 + MER117 DNA MER1_type 4 138 -59 1436 208 84 42 chr1 119562091 119562471 -162631193 - MSTD LTR MaLR 0 396 1 355 251 82 49 chr1 119562471 119562528 -162631136 + MER117 DNA MER1_type 138 192 -5 271 243 321 21 chr1 119562838 119562978 -162630686 + MIR3 SINE MIR 23 204 -4 858 154 16 50 chr1 119563304 119563486 -162630178 - MER20 DNA MER1_type -42 177 2 185 314 98 68 chr1 119563754 119564092 -162629572 + L2 LINE L2 2067 2414 -900 769 259 278 22 chr1 119564445 119565075 -162628589 - LTR50 LTR ERVL -4 791 1 243 0 0 0 chr1 119569598 119569625 -162624039 + (A)n Simple_repeat Simple_repeat 1 27 0 1068 302 49 57 chr1 119571541 119572068 -162621596 + MER115 DNA AcHobo 171 693 0 1338 213 37 3 chr1 119575314 119575610 -162618054 + MER33 DNA MER1_type 19 324 0 216 97 0 0 chr1 119576723 119576754 -162616910 + (CATA)n Simple_repeat Simple_repeat 4 34 0 243 270 16 16 chr1 119576787 119576850 -162616814 - L2 LINE L2 -7 3306 3244 2163 121 0 3 chr1 119577212 119577510 -162616154 + AluSx SINE Alu 1 297 -15 745 211 39 22 chr1 119577532 119577712 -162615952 - MER5A DNA MER1_type -6 183 1 228 222 42 14 chr1 119577800 119577872 -162615792 + MIR SINE MIR 136 209 -53 201 264 0 0 chr1 119578034 119578087 -162615577 - MIR3 SINE MIR -1 207 155 250 352 113 30 chr1 119579432 119579652 -162614012 + L2 LINE L2 2779 3014 -258 352 64 21 0 chr1 119579681 119579728 -162613936 - MLT1G LTR MaLR 0 590 543 361 259 238 0 chr1 119579911 119580038 -162613626 - MLT1G LTR MaLR -396 171 16 1347 168 50 53 chr1 119580755 119581058 -162612606 + MLT1B LTR MaLR 4 305 -85 475 302 183 14 chr1 119581139 119581560 -162612104 - L2 LINE L2 -1 3312 2821 200 214 0 0 chr1 119581720 119581762 -162611902 + L2 LINE L2 3230 3271 -1 979 262 228 18 chr1 119582021 119582892 -162610772 + L2 LINE L2 2258 3313 0 269 328 16 16 chr1 119582911 119583036 -162610628 - MER117 DNA MER1_type -72 125 1 191 340 0 0 chr1 119584214 119584261 -162609403 - L2 LINE L2 -15 3257 3211 505 323 108 0 chr1 119584628 119584860 -162608804 + MIR SINE MIR 4 260 -2 219 383 85 15 chr1 119585302 119585503 -162608161 + L2 LINE L2 2437 2651 -663 321 261 53 22 chr1 119586235 119586372 -162607292 + MIR SINE MIR 48 190 -68 795 161 0 0 chr1 119587783 119587895 -162605769 + FRAM SINE Alu 40 151 -25 902 237 188 37 chr1 119587906 119588311 -162605353 - LTR33 LTR ERVL -45 476 11 1111 234 19 0 chr1 119588746 119588960 -162604704 - MER58A DNA MER1_type -6 218 1 2328 114 0 9 chr1 119589175 119589490 -162604174 + AluSx SINE Alu 1 312 0 186 289 0 0 chr1 119590518 119590563 -162603101 - L2 LINE L2 -4 3309 3265 5565 96 16 3 chr1 119590841 119591572 -162602092 - L1PA10 LINE L1 0 6168 5428 3639 139 12 8 chr1 119591573 119592191 -162601473 + L1M LINE L1 4800 5419 -743 183 139 0 0 chr1 119593173 119593209 -162600455 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 273 96 55 96 chr1 119594086 119594126 -162599538 + MADE1 DNA Mariner 1 37 -43 435 38 0 0 chr1 119594126 119594179 -162599485 + MADE1 DNA Mariner 1 53 -27 240 343 27 0 chr1 119594343 119594416 -162599248 - MIR3 SINE MIR -49 159 85 575 186 211 29 chr1 119594492 119594696 -162598968 - MER69 DNA AcHobo 0 2526 2286 13236 134 20 11 chr1 119594698 119596463 -162597201 + Tigger1 DNA MER2_type 3 1792 -626 2000 118 3 0 chr1 119596463 119596751 -162596913 + L1MA4A LINE L1 6009 6297 -6 13236 134 20 11 chr1 119596751 119597036 -162596628 + Tigger1 DNA MER2_type 1792 2073 -345 2858 86 19 16 chr1 119597036 119597410 -162596254 + THE1C LTR MaLR 1 375 0 9958 116 32 44 chr1 119597410 119598993 -162594671 + THE1C-int LTR MaLR 1 1563 -17 2388 135 10 44 chr1 119599043 119599429 -162594235 + THE1C LTR MaLR 1 373 -2 2293 155 0 0 chr1 119599432 119599780 -162593884 + Tigger1 DNA MER2_type 2070 2417 -1 906 242 33 0 chr1 119599780 119600022 -162593642 - MER69 DNA AcHobo -238 2288 2039 2095 283 25 27 chr1 119600023 119600662 -162593002 - MER69 DNA AcHobo -586 640 3 1903 145 20 26 chr1 119600867 119601171 -162592493 + AluSx SINE Alu 2 303 -9 333 270 59 80 chr1 119601500 119601737 -162591927 - MIR SINE MIR -5 257 26 243 306 56 0 chr1 119601743 119601815 -162591849 - L2 LINE L2 -35 3237 3162 951 309 90 34 chr1 119601893 119602339 -162591325 + L2 LINE L2 2843 3313 0 325 283 75 8 chr1 119603822 119603942 -162589722 - L2 LINE L2 -424 2890 2763 241 314 0 26 chr1 119603947 119604041 -162589623 - MIR SINE MIR -108 100 9 269 342 30 80 chr1 119604553 119604816 -162588848 + L2 LINE L2 2365 2614 -700 309 51 0 0 chr1 119604915 119604954 -162588710 + (CA)n Simple_repeat Simple_repeat 2 40 0 305 207 128 0 chr1 119605010 119605110 -162588554 - MLT1I LTR MaLR 0 419 315 2389 170 49 11 chr1 119605116 119605563 -162588101 - LTR32 LTR ERVL 0 471 8 312 231 83 28 chr1 119605720 119605828 -162587836 - MLT1I LTR MaLR -293 116 3 2278 104 0 3 chr1 119605938 119606237 -162587427 - AluSx SINE Alu -14 298 1 8083 16 0 0 chr1 119607754 119609027 -162584637 - L1PA4 LINE L1 -3 6152 4890 2495 40 0 61 chr1 119609041 119609370 -162584294 + AluY SINE Alu 1 309 -2 214 300 113 25 chr1 119610321 119610401 -162583263 - MIR3 SINE MIR -110 98 12 635 237 123 34 chr1 119610664 119610999 -162582665 + L2 LINE L2 2751 3124 -189 231 36 0 0 chr1 119611147 119611175 -162582489 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 406 287 94 50 chr1 119612749 119612951 -162580713 - MIR SINE MIR -21 241 31 235 288 12 25 chr1 119612969 119613049 -162580615 + MIR SINE MIR 167 245 -17 223 288 0 0 chr1 119613167 119613226 -162580438 - L2 LINE L2 -2 3311 3253 180 318 59 35 chr1 119613883 119613968 -162579696 + MIR3 SINE MIR 10 96 -112 1005 232 68 0 chr1 119614295 119614502 -162579162 + MER58A DNA MER1_type 2 222 -2 544 240 80 64 chr1 119615672 119616094 -162577570 + MLT1J LTR MaLR 1 461 -21 181 213 120 67 chr1 119616343 119616418 -162577246 + L2 LINE L2 3193 3271 -1 471 329 26 0 chr1 119618004 119618159 -162575505 + MIR SINE MIR 34 192 -70 1299 40 0 0 chr1 119618571 119618720 -162574944 - L1PA6 LINE L1 -2 6152 6004 340 281 34 0 chr1 119618750 119618839 -162574825 - MIR SINE MIR -83 125 34 243 88 0 0 chr1 119619736 119619770 -162573894 + (T)n Simple_repeat Simple_repeat 1 34 0 258 167 0 0 chr1 119621075 119621117 -162572547 + MLT1K LTR MaLR 545 586 -2 435 282 38 30 chr1 119622014 119622145 -162571519 + L2 LINE L2 3115 3246 -26 235 65 43 0 chr1 119623397 119623443 -162570221 + A-rich Low_complexity Low_complexity 1 48 0 460 187 67 2 chr1 119623633 119623776 -162569888 + MER53 DNA DNA 2 185 -4 807 208 31 0 chr1 119625041 119625200 -162568464 + MER5A DNA MER1_type 2 165 -24 566 122 0 0 chr1 119625650 119625724 -162567940 - AluSq SINE Alu -20 293 220 1185 115 0 0 chr1 119625724 119625880 -162567784 - AluSq SINE Alu -157 156 1 792 147 15 0 chr1 119625880 119626016 -162567648 + L1MD3 LINE L1 7845 7982 -13 322 314 55 41 chr1 119627586 119627857 -162565807 - L1ME4a LINE L1 -246 5875 5601 1017 342 93 25 chr1 119627942 119628940 -162564724 + L2 LINE L2 2241 3313 0 941 225 9 28 chr1 119630695 119630908 -162562756 + MER3 DNA MER1_type 1 209 0 1934 128 3 54 chr1 119630916 119631229 -162562435 + AluSx SINE Alu 1 297 -15 2427 100 0 0 chr1 119631229 119631539 -162562125 + AluSg SINE Alu 1 310 0 1243 151 19 15 chr1 119631775 119631980 -162561684 + MER6B DNA MER2_type 5 210 0 928 315 19 22 chr1 119632015 119632377 -162561287 - L2 LINE L2 -1 3312 2952 300 286 95 27 chr1 119632789 119632936 -162560728 - L3 LINE CR1 -12 1565 1409 219 301 60 0 chr1 119633201 119633284 -162560380 - MIR3 SINE MIR -2 206 119 480 346 97 15 chr1 119633409 119633935 -162559729 + L2 LINE L2 1932 2500 -814 260 354 130 27 chr1 119634106 119634669 -162558995 + L2 LINE L2 945 1565 -1749 234 234 0 0 chr1 119634654 119634701 -162558963 - L2 LINE L2 0 3313 3267 * 891 278 171 13 chr1 119634770 119635245 -162558419 - L2 LINE L2 -47 3266 2704 1553 132 132 15 chr1 119635577 119635843 -162557821 + L1PB3 LINE L1 5857 6153 -1 233 308 199 41 chr1 119635843 119636039 -162557625 + L2 LINE L2 2770 2992 -321 787 277 142 92 chr1 119636132 119636677 -162556987 + L2 LINE L2 1716 2232 -1082 324 118 0 20 chr1 119636677 119636728 -162556936 + L1PB4 LINE L1 6040 6089 -67 787 277 142 92 chr1 119636728 119637125 -162556539 + L2 LINE L2 2232 2758 -556 408 245 10 20 chr1 119637284 119637386 -162556278 + L2 LINE L2 3177 3277 -36 501 169 40 90 chr1 119637401 119637578 -162556086 - L2 LINE L2 0 3313 3146 287 136 12 37 chr1 119637581 119637662 -162556002 + (TA)n Simple_repeat Simple_repeat 2 80 0 1797 247 77 75 chr1 119637687 119637935 -162555729 - L2 LINE L2 -155 3158 2912 2363 142 11 3 chr1 119637935 119638287 -162555377 - THE1A LTR MaLR 0 355 1 1797 247 77 75 chr1 119638287 119638808 -162554856 - L2 LINE L2 -401 2912 2377 204 40 0 0 chr1 119639944 119639969 -162553695 + (A)n Simple_repeat Simple_repeat 1 25 0 278 244 13 13 chr1 119641234 119641312 -162552352 - MER116 DNA Mariner -1 79 2 256 333 88 13 chr1 119641499 119641658 -162552006 - MIR3 SINE MIR -17 191 21 303 227 51 119 chr1 119642297 119642473 -162551191 - MLT1L LTR MaLR -417 198 35 375 289 161 14 chr1 119642474 119642692 -162550972 - L1ME LINE L1 -316 5805 5556 1076 275 125 25 chr1 119644044 119644516 -162549148 + LTR33 LTR ERVL 3 521 0 1524 284 82 22 chr1 119644635 119645217 -162548447 - MLT2E LTR ERVL -9 619 3 238 271 164 45 chr1 119645246 119645515 -162548149 - L2 LINE L2 0 3313 3013 539 297 95 27 chr1 119645608 119645904 -162547760 + L2 LINE L2 1738 2053 -1261 * 565 185 62 31 chr1 119645891 119646021 -162547643 + L2 LINE L2 3179 3312 -1 * 1327 303 111 24 chr1 119646019 119646633 -162547031 - L2 LINE L2 -1230 2084 1418 1481 301 67 25 chr1 119646636 119647267 -162546397 + L2 LINE L2 2078 2734 -580 983 184 47 117 chr1 119647267 119647656 -162546008 - MSTB1 LTR MaLR 0 396 1 584 266 119 36 chr1 119647802 119648054 -162545610 + L2 LINE L2 3038 3310 -3 395 274 26 0 chr1 119648099 119648216 -162545448 - L2 LINE L2 -642 2672 2553 489 303 90 22 chr1 119648342 119648520 -162545144 - MIR3 SINE MIR -3 205 16 2451 173 81 2 chr1 119649566 119649999 -162543665 + MLT1C LTR MaLR 1 467 0 436 296 183 17 chr1 119650046 119650542 -162543122 + L2 LINE L2 2667 3300 -13 207 88 0 0 chr1 119650543 119650577 -162543087 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 978 209 59 60 chr1 119651014 119651503 -162542161 + MLT1F1 LTR MaLR 1 565 -2 1710 100 131 4 chr1 119651586 119651705 -162541959 + AluSq SINE Alu 1 104 -209 285 51 0 0 chr1 119651705 119651744 -162541920 + (TAA)n Simple_repeat Simple_repeat 1 39 0 1710 100 131 4 chr1 119651744 119651884 -162541780 + AluSq SINE Alu 104 293 -20 809 199 85 81 chr1 119652023 119652076 -162541588 - MIR SINE MIR -14 248 197 2309 78 7 0 chr1 119652076 119652369 -162541295 + AluSp SINE Alu 1 295 -18 809 199 85 81 chr1 119652369 119652561 -162541103 - MIR SINE MIR -65 197 2 465 146 127 24 chr1 119653349 119653462 -162540202 + L1PA8 LINE L1 6040 6158 0 234 305 48 76 chr1 119653684 119653789 -162539875 + MIR3 SINE MIR 2 103 -105 440 251 219 16 chr1 119654532 119654715 -162538949 - MIR SINE MIR -6 256 37 265 289 48 0 chr1 119654921 119655004 -162538660 - MIR SINE MIR -24 238 152 2188 117 0 7 chr1 119655152 119655459 -162538205 + AluSq SINE Alu 1 305 -8 966 217 81 13 chr1 119656141 119656376 -162537288 + MIR SINE MIR 2 252 -10 10653 194 31 4 chr1 119656507 119658453 -162535211 + MERVL LTR ERVL 2880 4879 -606 182 65 65 0 chr1 119662459 119662490 -162531174 + A-rich Low_complexity Low_complexity 2 34 0 300 53 0 0 chr1 119662955 119662993 -162530671 + (TG)n Simple_repeat Simple_repeat 1 38 0 192 77 0 0 chr1 119662993 119663019 -162530645 + (CG)n Simple_repeat Simple_repeat 1 26 0 440 271 15 30 chr1 119663641 119663774 -162529890 + MIR3 SINE MIR 71 201 -7 360 259 72 48 chr1 119665107 119665273 -162528391 - MIR SINE MIR -5 257 88 1165 257 73 59 chr1 119665408 119665886 -162527778 + MLT1J LTR MaLR 22 506 -5 1130 70 0 0 chr1 119666597 119666739 -162526925 - AluY SINE Alu -9 302 161 222 340 34 34 chr1 119667281 119667428 -162526236 + L2 LINE L2 2256 2402 -912 245 315 97 88 chr1 119667758 119668180 -162525484 + L2 LINE L2 2807 3232 -40 7490 20 0 1 chr1 119670407 119671257 -162522407 - L1PA3 LINE L1 -4 6151 5303 11118 28 4 1 chr1 119671257 119672562 -162521102 + L1PA3 LINE L1 3996 5303 -843 248 309 125 44 chr1 119672898 119673034 -162520630 - L2 LINE L2 -8 3264 3118 1402 279 53 32 chr1 119673123 119673675 -162519989 + L2 LINE L2 2421 3063 -250 402 300 42 77 chr1 119674064 119674324 -162519340 + L2 LINE L2 3050 3300 -13 227 54 27 0 chr1 119674324 119674361 -162519303 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 222 293 12 37 chr1 119674575 119674657 -162519007 + L3 LINE CR1 1112 1191 -386 359 288 195 10 chr1 119674801 119675006 -162518658 + L3 LINE CR1 1256 1498 -79 363 60 0 0 chr1 119675542 119675592 -162518072 + (TATG)n Simple_repeat Simple_repeat 3 52 0 1907 129 0 7 chr1 119675607 119675885 -162517779 - AluSx SINE Alu -36 276 1 220 333 0 0 chr1 119676504 119676573 -162517091 - MIR SINE MIR -21 241 173 227 412 20 40 chr1 119676847 119677046 -162516618 - L3 LINE CR1 -56 1521 1327 1566 220 74 38 chr1 119677173 119677619 -162516045 + MLT1C LTR MaLR 6 467 0 662 306 141 33 chr1 119678501 119678985 -162514679 + L2 LINE L2 2222 2757 -557 497 367 68 48 chr1 119679004 119679402 -162514262 + L2 LINE L2 2862 3267 -5 384 22 0 0 chr1 119679405 119679450 -162514214 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 2679 173 86 100 chr1 119679647 119680049 -162513615 - L1MC4 LINE L1 -1 8041 7654 213 39 0 0 chr1 119680049 119680075 -162513589 + (TG)n Simple_repeat Simple_repeat 2 27 0 2679 173 86 100 chr1 119680075 119680465 -162513199 - L1MC4 LINE L1 -388 7654 7260 425 252 36 9 chr1 119680672 119680783 -162512881 - MIR3 SINE MIR -31 177 64 201 191 0 24 chr1 119681001 119681043 -162512621 + CT-rich Low_complexity Low_complexity 3 43 0 21 36 0 0 chr1 119681363 119681391 -162512273 + AT_rich Low_complexity Low_complexity 1 28 0 282 235 74 12 chr1 119681911 119681992 -162511672 - MIR SINE MIR -10 252 167 189 188 0 0 chr1 119682171 119682203 -162511461 + L2 LINE L2 3038 3069 -244 588 222 56 0 chr1 119682235 119682361 -162511303 + L2 LINE L2 3181 3313 0 213 108 0 0 chr1 119684529 119684566 -162509098 + (A)n Simple_repeat Simple_repeat 1 37 0 260 234 186 40 chr1 119685181 119685305 -162508359 - MIR SINE MIR -44 218 77 2137 106 0 14 chr1 119685386 119685700 -162507964 + AluSq SINE Alu 1 313 0 198 0 0 0 chr1 119686116 119686138 -162507526 + (CA)n Simple_repeat Simple_repeat 2 23 0 192 282 34 120 chr1 119686351 119686468 -162507196 - MIR3 SINE MIR -9 199 93 706 146 8 8 chr1 119691123 119691253 -162502411 - AluSg/x SINE Alu -15 294 165 201 182 0 0 chr1 119691602 119691635 -162502029 + L2 LINE L2 3230 3262 -10 281 319 106 40 chr1 119691708 119692053 -162501611 + L2 LINE L2 2770 3142 -171 344 303 160 0 chr1 119692070 119692258 -162501406 - HAL1 LINE L1 -4 2503 2286 1491 239 20 42 chr1 119692505 119692883 -162500781 + MSTD LTR MaLR 1 371 -25 1853 151 84 0 chr1 119692883 119693215 -162500449 + MER46B DNA MER2_type 1 235 -1 1491 239 20 42 chr1 119693215 119693241 -162500423 + MSTD LTR MaLR 371 396 0 1311 270 141 66 chr1 119693241 119694273 -162499391 - HAL1 LINE L1 -568 1939 739 2053 119 7 3 chr1 119694273 119694566 -162499098 - AluSg SINE Alu -16 294 1 1311 270 141 66 chr1 119694566 119695018 -162498646 - HAL1 LINE L1 -1768 739 323 384 283 225 37 chr1 119696335 119696522 -162497142 + MIR SINE MIR 40 261 -1 752 168 90 26 chr1 119696718 119696873 -162496791 + FRAM SINE Alu 2 166 0 34 0 0 0 chr1 119697688 119697722 -162495942 + AT_rich Low_complexity Low_complexity 1 34 0 1120 191 49 0 chr1 119698347 119698572 -162495092 - MER46A DNA MER2_type 0 236 1 180 97 0 0 chr1 119698912 119698943 -162494721 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 294 205 0 0 chr1 119699443 119699526 -162494138 + (TA)n Simple_repeat Simple_repeat 1 83 0 732 252 41 35 chr1 119699709 119700026 -162493638 - L1ME LINE L1 -5183 887 569 1041 235 117 36 chr1 119700048 119700406 -162493258 - L1ME LINE L1 -5678 392 6 789 306 107 21 chr1 119700554 119701135 -162492529 - L1MEd LINE L1 -4881 1238 608 478 194 0 20 chr1 119701164 119701262 -162492402 - AluY SINE Alu -7 304 209 255 191 0 0 chr1 119702060 119702107 -162491557 - L2 LINE L2 -1 3312 3266 652 168 17 0 chr1 119702438 119702557 -162491107 + L1PA15 LINE L1 4794 4914 -1232 5504 122 22 7 chr1 119702561 119702678 -162490986 + L1PA15 LINE L1 4902 5016 -1149 5504 121 22 7 chr1 119702678 119703917 -162489747 + L1PA15 LINE L1 4902 6159 -6 5504 122 22 7 chr1 119703917 119703947 -162489717 + L1PA15 LINE L1 5016 6159 -6 22 0 0 0 chr1 119704764 119704786 -162488878 + AT_rich Low_complexity Low_complexity 1 22 0 1323 171 115 10 chr1 119705237 119705541 -162488123 - MER1B DNA MER1_type 0 337 2 2319 115 33 0 chr1 119756301 119756665 -162436999 + Tigger1 DNA MER2_type 494 869 -1549 414 202 32 0 chr1 119757728 119757822 -162435842 + L1M4 LINE L1 2658 2754 -3392 1271 356 8 14 chr1 119757836 119758423 -162435241 + L1PA13 LINE L1 788 1371 -6203 242 309 75 10 chr1 119758465 119758675 -162434989 + L1PA13 LINE L1 2085 2298 -5276 4344 233 106 5 chr1 119759212 119760323 -162433341 + L1 LINE L1 2442 3726 -2420 180 77 0 0 chr1 119760323 119760349 -162433315 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4344 233 106 5 chr1 119760349 119760639 -162433025 + L1 LINE L1 3726 3985 -2161 3359 208 19 3 chr1 119760628 119761412 -162432252 + L1P LINE L1 4504 5300 -846 * 4898 139 32 13 chr1 119761413 119762336 -162431328 + L1PA16 LINE L1 5224 6162 -4 22 0 0 0 chr1 119762488 119762510 -162431154 + AT_rich Low_complexity Low_complexity 1 22 0 2217 251 43 6 chr1 119762514 119763336 -162430328 + L1M4 LINE L1 2738 3589 -2557 232 295 81 91 chr1 119764083 119764293 -162429371 - L2 LINE L2 -561 2753 2546 633 272 35 104 chr1 119764380 119764726 -162428938 - L2 LINE L2 0 3313 2992 1029 117 105 39 chr1 119764971 119765228 -162428436 + MER33 DNA MER1_type 47 320 -4 247 160 0 0 chr1 119765632 119765682 -162427982 - L1M4 LINE L1 -3882 2264 2215 550 266 153 15 chr1 119766407 119766587 -162427077 + MIR SINE MIR 31 243 -19 225 0 0 0 chr1 119766587 119766612 -162427052 + (TA)n Simple_repeat Simple_repeat 1 25 0 550 266 153 15 chr1 119766612 119766634 -162427030 + MIR SINE MIR 243 261 -1 183 80 0 0 chr1 119766735 119766760 -162426904 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 228 35 0 0 chr1 119766759 119766788 -162426876 + (TA)n Simple_repeat Simple_repeat 1 29 0 28517 111 18 60 chr1 119767249 119771254 -162422410 + L1PA7 LINE L1 12 3666 -2506 2310 107 0 0 chr1 119771254 119771554 -162422110 + AluY SINE Alu 1 300 -11 28517 111 18 60 chr1 119771554 119773961 -162419703 + L1PA7 LINE L1 3666 6171 -1 634 88 0 0 chr1 119774325 119774416 -162419248 + AluY SINE Alu 213 303 -8 412 271 148 40 chr1 119775596 119776043 -162417621 - L1ME4a LINE L1 -52 6069 5575 457 240 152 8 chr1 119776394 119776519 -162417145 + MIR SINE MIR 13 155 -107 301 264 36 79 chr1 119777173 119777249 -162416415 + MER94 DNA DNA 1 71 -63 1841 165 0 3 chr1 119777249 119777554 -162416110 + AluSx SINE Alu 1 304 0 301 264 36 79 chr1 119777554 119777616 -162416048 + MER94 DNA DNA 71 134 0 207 349 87 13 chr1 119777749 119777898 -162415766 + L2 LINE L2 1797 1956 -1358 1007 271 91 35 chr1 119778052 119778458 -162415206 - MLT1J2 LTR MaLR -21 429 1 1920 164 0 3 chr1 119778496 119778800 -162414864 - AluJb SINE Alu -9 303 1 1675 172 0 8 chr1 119779977 119780244 -162413420 + AluJo SINE Alu 1 265 -47 2679 124 17 0 chr1 119780247 119780659 -162413005 + MLT2A2 LTR ERVL 1 419 -34 1731 163 83 0 chr1 119781674 119781987 -162411677 + MER1B DNA MER1_type 1 339 0 1591 184 53 13 chr1 119782296 119782595 -162411069 - AluJb SINE Alu -1 311 1 395 264 26 80 chr1 119782997 119783349 -162410315 + L1MC4 LINE L1 7618 7950 -92 1037 200 0 5 chr1 119783350 119783535 -162410129 - AluJb SINE Alu -19 293 110 722 209 0 0 chr1 119783972 119784101 -162409563 + FLAM_A SINE Alu 1 129 -4 340 257 154 40 chr1 119784109 119784284 -162409380 + L3 LINE CR1 1216 1410 -167 1844 169 0 7 chr1 119787562 119787863 -162405801 + AluJb SINE Alu 1 299 -13 198 261 140 45 chr1 119787904 119788061 -162405603 + L2 LINE L2 3026 3197 -116 341 325 60 19 chr1 119788198 119788409 -162405255 - MIR SINE MIR -19 243 31 240 329 117 65 chr1 119788687 119788918 -162404746 - L2 LINE L2 -340 2974 2732 2031 209 130 32 chr1 119788925 119789585 -162404079 + MER50 LTR ERV1 10 734 0 202 350 111 17 chr1 119789592 119789709 -162403955 - L2 LINE L2 -587 2727 2600 2073 131 0 19 chr1 119789757 119790071 -162403593 + AluSx SINE Alu 1 308 -4 342 188 211 8 chr1 119790237 119790365 -162403299 + MER103 DNA DNA 6 159 -7 446 296 165 15 chr1 119792652 119792858 -162400806 - MIR SINE MIR -1 261 25 6225 83 16 12 chr1 119792876 119793865 -162399799 - L1PB1 LINE L1 -1 6150 5148 226 233 189 33 chr1 119794587 119794677 -162398987 - L3b LINE CR1 -136 1447 1344 258 279 142 58 chr1 119795323 119795513 -162398151 + MIR SINE MIR 11 216 -46 194 304 58 0 chr1 119795843 119795912 -162397752 + MIR SINE MIR 138 210 -52 186 248 128 9 chr1 119796018 119796127 -162397537 + MIR SINE MIR 134 255 -7 221 169 14 56 chr1 119797916 119797987 -162395677 + T-rich Low_complexity Low_complexity 5 72 0 1838 252 264 31 chr1 119798411 119799868 -162393796 - L2 LINE L2 -56 3257 1476 1585 256 110 79 chr1 119801276 119802486 -162391178 - L1MC4 LINE L1 -15 8027 6781 182 300 80 0 chr1 119802592 119802642 -162391022 + L3 LINE CR1 1521 1574 -3 301 280 8 34 chr1 119802864 119802982 -162390682 + MARNA DNA Mariner 178 292 -294 221 256 0 0 chr1 119803122 119803165 -162390499 - L2 LINE L2 -6 3307 3265 262 338 83 64 chr1 119803243 119803509 -162390155 - L2 LINE L2 -52 3220 2950 2154 149 0 0 chr1 119803738 119804047 -162389617 + AluSx SINE Alu 1 309 -3 588 265 149 42 chr1 119804112 119804327 -162389337 - MIR SINE MIR -22 240 3 219 288 113 80 chr1 119804391 119804693 -162388971 - L2 LINE L2 -652 2662 2351 33 43 0 0 chr1 119806818 119806865 -162386799 + AT_rich Low_complexity Low_complexity 1 47 0 1563 100 36 0 chr1 119807372 119807623 -162386041 + L1MA2 LINE L1 6045 6304 0 1633 162 3 44 chr1 119807632 119807975 -162385689 - AluJo SINE Alu 0 331 1 41 21 0 0 chr1 119807976 119808024 -162385640 + AT_rich Low_complexity Low_complexity 1 48 0 276 330 18 0 chr1 119808145 119808254 -162385410 + (TAG)n Simple_repeat Simple_repeat 1 111 0 25 0 0 0 chr1 119808478 119808503 -162385161 + AT_rich Low_complexity Low_complexity 1 25 0 594 263 25 0 chr1 119808901 119809061 -162384603 - MIR SINE MIR -98 164 1 303 308 122 23 chr1 119809428 119809600 -162384064 - MIR SINE MIR -30 232 44 406 118 0 0 chr1 119811546 119811614 -162382050 - MLT2A2 LTR ERVL -385 68 1 12374 98 15 3 chr1 119811614 119814355 -162379309 - HERVL-A2 LTR ERVL 0 5654 2806 9175 65 9 0 chr1 119814342 119815564 -162378100 - HERVL-A2 LTR ERVL -4421 1233 1 * 321 61 0 136 chr1 119815564 119815630 -162378034 - MLT2A2 LTR ERVL 0 453 397 639 55 90 11 chr1 119815630 119816087 -162377577 + (TA)n Simple_repeat Simple_repeat 1 493 0 21 0 0 0 chr1 119816091 119816112 -162377552 + AT_rich Low_complexity Low_complexity 1 21 0 650 48 83 18 chr1 119816112 119816280 -162377384 + (TA)n Simple_repeat Simple_repeat 1 179 0 1242 81 29 0 chr1 119816282 119816454 -162377210 - MLT2A2 LTR ERVL -73 380 204 648 152 0 27 chr1 119816699 119816811 -162376853 + FLAM_A SINE Alu 12 120 -22 305 351 84 51 chr1 119817758 119818208 -162375456 - L2 LINE L2 -4 3268 2804 326 250 0 14 chr1 119818374 119818446 -162375218 + L2 LINE L2 3241 3311 -2 393 318 148 8 chr1 119818592 119818951 -162374713 - L2 LINE L2 -1219 2095 1687 241 321 96 43 chr1 119819118 119819305 -162374359 + MIR3 SINE MIR 4 200 -8 227 343 10 0 chr1 119820155 119820254 -162373410 + L2 LINE L2 2430 2529 -785 243 372 53 9 chr1 119820672 119820785 -162372879 + L2 LINE L2 3137 3254 -18 511 336 23 23 chr1 119820916 119821133 -162372531 - MIR SINE MIR 0 262 46 6051 53 0 0 chr1 119821258 119822000 -162371664 + L1PA8 LINE L1 5427 6168 -4 2347 229 31 30 chr1 119822080 119822718 -162370946 - MER21B LTR ERV1 -11 852 214 940 182 18 53 chr1 119823396 119823621 -162370043 - MER20 DNA MER1_type -2 217 1 342 115 0 0 chr1 119824473 119824525 -162369139 + (A)n Simple_repeat Simple_repeat 1 52 0 737 218 0 17 chr1 119824543 119824722 -162368942 + MER96B DNA MER1_type? 3 178 -239 237 62 0 0 chr1 119824746 119824778 -162368886 + MER96B DNA MER1_type? 144 175 0 386 280 60 50 chr1 119824780 119824998 -162368666 - MLT1L LTR MaLR -49 566 347 276 309 82 73 chr1 119825131 119825264 -162368400 - MIR SINE MIR -40 222 85 2382 101 0 0 chr1 119825264 119825572 -162368092 + AluSc SINE Alu 1 308 -1 276 309 82 73 chr1 119825572 119825658 -162368006 - MIR SINE MIR -177 85 1 2151 119 0 0 chr1 119827344 119827646 -162366018 - AluSg SINE Alu -8 302 1 1071 90 0 0 chr1 119827650 119827783 -162365881 - AluSq/x SINE Alu -179 133 1 2050 134 142 31 chr1 119827804 119828185 -162365479 + MSTA LTR MaLR 6 428 0 183 42 0 0 chr1 119828533 119828557 -162365107 + (TG)n Simple_repeat Simple_repeat 1 24 0 276 308 4 16 chr1 119829308 119829402 -162364262 - MIR SINE MIR -93 115 21 2489 158 92 55 chr1 119829569 119830114 -162363550 - MER34B LTR ERV1 0 565 1 366 283 58 0 chr1 119830122 119830242 -162363422 - MIR SINE MIR -57 205 79 894 75 0 0 chr1 119830852 119830972 -162362692 - L1M LINE L1 -923 5379 5260 300 130 0 0 chr1 119830974 119831028 -162362636 + L1MA1 LINE L1 6246 6299 -3 27 0 0 0 chr1 119831028 119831055 -162362609 + AT_rich Low_complexity Low_complexity 1 27 0 216 336 49 16 chr1 119831687 119831809 -162361855 - L2 LINE L2 0 3272 3147 27 29 0 0 chr1 119831861 119831895 -162361769 + AT_rich Low_complexity Low_complexity 1 34 0 1617 279 82 46 chr1 119832175 119833375 -162360289 - L1M4 LINE L1 -1561 4585 3343 1087 293 125 25 chr1 119833363 119834140 -162359524 - L1MC4a LINE L1 -1005 6803 5949 * 284 264 0 14 chr1 119834776 119834848 -162358816 - MLT1I LTR MaLR -7 402 332 301 279 36 57 chr1 119834944 119835084 -162358580 + LTR33A LTR ERVL 1 137 -386 942 159 0 37 chr1 119835350 119835513 -162358151 - FAM SINE Alu -3 46 1 285 314 102 65 chr1 119835559 119836110 -162357554 - L1MEd LINE L1 -5544 575 5 245 203 98 84 chr1 119836455 119836598 -162357066 + MER53 DNA DNA 45 189 0 248 176 0 0 chr1 119837320 119837371 -162356293 - L1MA8 LINE L1 0 6291 6241 2108 122 7 3 chr1 119837954 119838250 -162355414 - L1PA16 LINE L1 -9 6157 5861 807 252 65 66 chr1 119838495 119838896 -162354768 + MLT1H LTR MaLR 1 572 -23 378 282 58 39 chr1 119838993 119839149 -162354515 + MER117 DNA MER1_type 35 193 -4 351 292 155 6 chr1 119839802 119839963 -162353701 + MIR SINE MIR 8 192 -70 609 66 0 0 chr1 119839976 119840052 -162353612 - Alu SINE Alu -5 304 229 249 250 54 0 chr1 119840689 119840745 -162352919 - L3 LINE CR1 -20 1557 1499 459 274 46 20 chr1 119840898 119841051 -162352613 - MER103 DNA DNA -8 158 2 1949 207 66 7 chr1 119841923 119842363 -162351301 - MLT1C LTR MaLR 0 467 2 251 314 105 9 chr1 119842669 119842774 -162350890 - L2 LINE L2 -2 3311 3197 352 296 5 103 chr1 119842804 119843007 -162350657 - L2 LINE L2 -100 3172 2990 552 312 161 22 chr1 119843211 119843750 -162349914 - L1ME4a LINE L1 0 6121 5508 413 293 145 58 chr1 119843834 119844068 -162349596 - L1ME4a LINE L1 -749 5397 5185 297 0 0 0 chr1 119844068 119844101 -162349563 + (TC)n Simple_repeat Simple_repeat 2 34 0 243 0 0 0 chr1 119844100 119844127 -162349537 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 413 293 145 58 chr1 119844101 119844435 -162349229 - L1ME4a LINE L1 -961 5185 4783 291 356 44 20 chr1 119844447 119844899 -162348765 - L1ME4a LINE L1 -1534 4612 4150 470 310 47 31 chr1 119844929 119845184 -162348480 - L2 LINE L2 -580 2734 2476 217 164 27 27 chr1 119845843 119845916 -162347748 + (CTATA)n Simple_repeat Simple_repeat 1 73 0 391 184 10 10 chr1 119846361 119846459 -162347205 + GA-rich Low_complexity Low_complexity 2 99 0 302 235 148 0 chr1 119847407 119847488 -162346176 - L1MC4 LINE L1 -1335 6707 6615 1058 148 0 12 chr1 119847488 119847650 -162346014 - AluSg/x SINE Alu -16 294 135 460 243 132 21 chr1 119847705 119847849 -162345815 + MIR SINE MIR 30 189 -73 475 302 44 92 chr1 119847884 119848179 -162345485 + L2 LINE L2 2992 3272 0 24 32 0 0 chr1 119848331 119848362 -162345302 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr1 119848840 119848860 -162344804 + (A)n Simple_repeat Simple_repeat 1 20 0 970 95 8 0 chr1 119849593 119849719 -162343945 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr1 119849719 119849747 -162343917 + AT_rich Low_complexity Low_complexity 1 28 0 634 283 165 10 chr1 119850952 119851443 -162342221 + L1M4 LINE L1 3232 3798 -2348 597 339 54 9 chr1 119851489 119851932 -162341732 + L1M4 LINE L1 4532 4994 -1152 1717 274 91 4 chr1 119852391 119852888 -162340776 - MLT1F LTR MaLR -1 541 2 317 186 17 0 chr1 119853024 119853083 -162340581 + MER58 DNA MER1_type 39 98 -117 2901 131 8 4 chr1 119853089 119853570 -162340094 + L1P LINE L1 3022 3504 -2642 238 329 12 87 chr1 119853781 119853942 -162339722 - LTR16B LTR ERVL -315 149 1 * 580 126 0 11 chr1 119853942 119854023 -162339641 + Charlie1 DNA MER1_type 2682 2761 0 479 293 87 45 chr1 119854029 119854364 -162339300 - L1ME LINE L1 -297 5824 5476 1937 183 23 31 chr1 119854403 119854791 -162338873 - MSTB2 LTR MaLR 0 457 73 257 216 0 0 chr1 119854980 119855031 -162338633 + MER92A LTR ERV1 62 112 -300 308 306 53 24 chr1 119855074 119855244 -162338420 + L2 LINE L2 2197 2371 -943 288 279 73 15 chr1 119855416 119855552 -162338112 + L2 LINE L2 2397 2540 -774 385 227 62 0 chr1 119855552 119855649 -162338015 - L2 LINE L2 -3 3310 3208 1096 228 112 10 chr1 119855665 119855977 -162337687 - MLT2F LTR ERVL -2 661 318 507 343 111 21 chr1 119856278 119856747 -162336917 - L3 LINE CR1 -11 1566 1056 606 280 23 6 chr1 119857060 119857235 -162336429 - MER5B DNA MER1_type 0 178 1 187 255 106 0 chr1 119860127 119860174 -162333490 + L2 LINE L2 3004 3055 -217 316 289 264 26 chr1 119860219 119860775 -162332889 + L2 LINE L2 2551 3259 -13 252 342 125 48 chr1 119860923 119861338 -162332326 - L3 LINE CR1 -267 1310 864 180 257 37 59 chr1 119861350 119861486 -162332178 - L2 LINE L2 -560 2754 2622 30 45 0 0 chr1 119862589 119862633 -162331031 + AT_rich Low_complexity Low_complexity 1 44 0 522 234 40 8 chr1 119862741 119862865 -162330799 + MIR SINE MIR 56 183 -79 2117 146 53 3 chr1 119863154 119863496 -162330168 - MLT1A1 LTR MaLR -2 363 5 437 280 104 22 chr1 119864674 119864856 -162328808 - MIR SINE MIR -44 218 22 411 272 46 38 chr1 119864991 119865149 -162328515 + MIR SINE MIR 20 190 -63 2065 142 0 0 chr1 119865164 119865460 -162328204 + AluSx SINE Alu 1 296 -16 208 239 30 30 chr1 119866512 119866579 -162327085 - MIR SINE MIR -84 124 58 381 258 0 67 chr1 119866745 119866865 -162326799 + MIR SINE MIR 147 258 -4 450 355 30 22 chr1 119867382 119867613 -162326051 - L2 LINE L2 -212 3060 2828 1425 197 7 41 chr1 119867613 119867908 -162325756 + AluJo SINE Alu 1 285 -27 180 77 0 0 chr1 119867908 119867934 -162325730 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 351 226 66 28 chr1 119868276 119868382 -162325282 + MLT1L LTR MaLR 102 211 -404 232 306 0 0 chr1 119868481 119868543 -162325121 + MER112 DNA MER1_type 3 64 -196 2356 75 36 3 chr1 119868652 119868960 -162324704 - L1P4 LINE L1 -408 5760 5443 354 261 117 9 chr1 119869973 119870084 -162323580 - MIR SINE MIR -120 142 20 606 278 63 40 chr1 119870399 119870622 -162323042 + MIR SINE MIR 2 229 -33 254 348 116 0 chr1 119871685 119871797 -162321867 + L2 LINE L2 3148 3272 0 354 265 31 10 chr1 119871941 119872039 -162321625 + MLT1J LTR MaLR 88 187 -324 546 279 63 5 chr1 119872115 119872305 -162321359 + MLT1J2 LTR MaLR 247 447 -3 21 0 0 0 chr1 119872527 119872548 -162321116 + AT_rich Low_complexity Low_complexity 1 21 0 932 176 41 0 chr1 119873248 119873418 -162320246 + FAM SINE Alu 1 41 -8 180 0 0 0 chr1 119874092 119874112 -162319552 + (TA)n Simple_repeat Simple_repeat 2 21 0 342 0 0 0 chr1 119875517 119875555 -162318109 + (TG)n Simple_repeat Simple_repeat 2 39 0 851 242 45 33 chr1 119876714 119876958 -162316706 + MIR SINE MIR 14 260 -2 335 312 42 60 chr1 119877048 119877263 -162316401 + MIR SINE MIR 45 255 -7 665 290 108 13 chr1 119877273 119877504 -162316160 - MIR SINE MIR -3 259 7 24 0 0 0 chr1 119877559 119877583 -162316081 + AT_rich Low_complexity Low_complexity 1 24 0 450 326 119 62 chr1 119879043 119879445 -162314219 - L2 LINE L2 -19 3253 2829 400 331 22 22 chr1 119880172 119880353 -162313311 + MIR SINE MIR 34 214 -48 290 338 32 58 chr1 119880374 119880528 -162313136 + L2 LINE L2 2871 3020 -252 754 229 66 6 chr1 119880695 119880861 -162312803 - MER5A DNA MER1_type -13 176 1 365 295 151 6 chr1 119880948 119881114 -162312550 - L2 LINE L2 0 3313 3124 193 318 0 48 chr1 119881284 119881347 -162312317 - L2 LINE L2 -10 3303 3244 * 603 262 127 18 chr1 119881342 119881571 -162312093 + MIR SINE MIR 9 262 0 1455 209 47 44 chr1 119881828 119882015 -162311649 - L1M4 LINE L1 -388 5796 5611 2495 47 0 44 chr1 119882015 119882336 -162311328 - AluY SINE Alu -4 307 1 1455 209 47 44 chr1 119882336 119882598 -162311066 - L1M4 LINE L1 -573 5611 5346 24 67 0 0 chr1 119882765 119882810 -162310854 + AT_rich Low_complexity Low_complexity 1 45 0 212 196 0 18 chr1 119882936 119882992 -162310672 + (TA)n Simple_repeat Simple_repeat 2 56 0 4944 134 16 12 chr1 119883111 119885166 -162308498 - L1PA15 LINE L1 -3 6162 4124 970 191 10 0 chr1 119885198 119885397 -162308267 + L1PA15-16 LINE L1 2566 2766 -4083 802 106 0 0 chr1 119885397 119885501 -162308163 - AluY SINE Alu -206 105 2 1755 274 52 3 chr1 119885502 119886191 -162307473 - L1PA15 LINE L1 -2636 3510 2788 563 237 31 0 chr1 119886229 119886423 -162307241 - L1M4 LINE L1 -984 5162 4963 971 201 102 40 chr1 119886423 119886647 -162307017 + MSTD LTR MaLR 106 352 -44 2121 113 0 0 chr1 119886647 119886963 -162306701 + AluSg SINE Alu 1 316 0 971 201 102 40 chr1 119886963 119887011 -162306653 + MSTD LTR MaLR 352 396 0 422 267 68 7 chr1 119888148 119888294 -162305370 + MIR SINE MIR 102 256 -6 1602 185 17 20 chr1 119888459 119888756 -162304908 - AluJo SINE Alu -16 296 1 21 0 0 0 chr1 119889606 119889627 -162304037 + AT_rich Low_complexity Low_complexity 1 21 0 36 82 0 0 chr1 119890183 119890268 -162303396 + AT_rich Low_complexity Low_complexity 1 85 0 24 32 0 0 chr1 119890573 119890604 -162303060 + AT_rich Low_complexity Low_complexity 1 31 0 977 204 35 5 chr1 119890684 119890885 -162302779 - MER3 DNA MER1_type -1 208 2 24 77 0 0 chr1 119891573 119891625 -162302039 + AT_rich Low_complexity Low_complexity 1 52 0 2241 72 38 3 chr1 119891903 119892222 -162301442 - AluY SINE Alu 0 311 1 216 98 59 39 chr1 119892309 119892360 -162301304 + T-rich Low_complexity Low_complexity 2 53 0 218 338 39 0 chr1 119893311 119893388 -162300276 + MER5B DNA MER1_type 7 86 -92 25 31 0 0 chr1 119893388 119893420 -162300244 + AT_rich Low_complexity Low_complexity 1 32 0 873 168 0 0 chr1 119893437 119893574 -162300090 - AluJb SINE Alu -171 141 5 444 222 9 37 chr1 119893579 119893687 -162299977 + MER5B DNA MER1_type 74 178 0 1694 168 11 15 chr1 119895518 119895792 -162297872 - AluJb SINE Alu -39 273 1 355 329 56 31 chr1 119895892 119896053 -162297611 + L2 LINE L2 3108 3272 0 189 0 0 0 chr1 119896063 119896084 -162297580 + (CAAT)n Simple_repeat Simple_repeat 3 23 0 1081 167 6 0 chr1 119896176 119896338 -162297326 - AluSx SINE Alu -149 163 1 21 57 0 0 chr1 119896654 119896689 -162296975 + AT_rich Low_complexity Low_complexity 1 35 0 261 301 9 35 chr1 119897277 119897390 -162296274 + MLT1J LTR MaLR 104 213 -298 313 167 0 0 chr1 119898058 119898118 -162295546 - Tigger1 DNA MER2_type -2171 247 188 2336 189 37 13 chr1 119898125 119898586 -162295078 + MER70A LTR ERVL 1 472 0 1281 313 8 5 chr1 119898604 119898991 -162294673 - LTR16C LTR ERVL -67 424 37 765 334 129 8 chr1 119899235 119899615 -162294049 - L2 LINE L2 -354 2960 2535 524 299 115 45 chr1 119899615 119900016 -162293648 + L1M2a LINE L1 10 438 -6730 870 285 35 21 chr1 119900176 119900756 -162292908 + L1M2a LINE L1 1545 2153 -4945 * 11746 196 44 41 chr1 119900738 119901583 -162292081 + L1MA9 LINE L1 1113 1954 -4594 6222 76 13 26 chr1 119901583 119902567 -162291097 + L1PA13 LINE L1 5191 6162 -1 11746 196 44 41 chr1 119902567 119903029 -162290635 + L1MA9 LINE L1 1954 2413 -4135 1675 152 59 21 chr1 119903029 119903319 -162290345 - AluJo SINE Alu -11 301 1 11746 196 44 41 chr1 119903319 119903978 -162289686 + L1MA9 LINE L1 2413 3069 -3479 2399 85 3 3 chr1 119903978 119904285 -162289379 - AluSq SINE Alu -6 307 1 11746 196 44 41 chr1 119904285 119904710 -162288954 + L1MA9 LINE L1 3069 3491 -3057 2268 94 0 3 chr1 119904710 119905008 -162288656 + AluSx SINE Alu 1 297 -15 2173 108 3 3 chr1 119905012 119905319 -162288345 + AluY SINE Alu 1 307 -4 11746 196 44 41 chr1 119905319 119908340 -162285324 + L1MA9 LINE L1 3493 6541 -7 29 47 0 0 chr1 119908359 119908402 -162285262 + AT_rich Low_complexity Low_complexity 1 43 0 2766 199 51 0 chr1 119908514 119909047 -162284617 + MER68 LTR ERV1 1 560 -2 836 248 53 53 chr1 119909278 119909504 -162284160 - MIR SINE MIR -32 230 5 360 328 67 0 chr1 119909673 119909792 -162283872 + MIR3 SINE MIR 30 156 -52 1255 315 41 4 chr1 119909927 119910410 -162283254 + MLT1J LTR MaLR 2 502 -9 21 0 0 0 chr1 119910923 119910944 -162282720 + AT_rich Low_complexity Low_complexity 1 21 0 2023 159 0 19 chr1 119911408 119911723 -162281941 - AluJo SINE Alu -3 309 1 344 305 19 0 chr1 119911778 119911883 -162281781 + L2 LINE L2 3192 3298 -15 1658 232 158 16 chr1 119911940 119912497 -162281167 + L2 LINE L2 1197 1832 -1482 259 302 31 49 chr1 119912490 119912717 -162280947 + L2 LINE L2 3118 3312 -1 * 325 238 81 50 chr1 119914001 119914071 -162279593 + L1ME4a LINE L1 5956 6022 -99 1718 139 68 81 chr1 119914071 119914466 -162279198 + MLT1B LTR MaLR 1 390 0 325 238 81 50 chr1 119914466 119914555 -162279109 + L1ME4a LINE L1 6022 6120 -1 261 366 8 8 chr1 119915203 119915326 -162278338 + CT-rich Low_complexity Low_complexity 4 126 0 236 369 71 0 chr1 119915523 119915607 -162278057 + L2 LINE L2 3155 3244 -28 354 285 105 17 chr1 119916079 119916251 -162277413 + L2 LINE L2 3126 3312 -1 13678 148 127 74 chr1 119918064 119918491 -162275173 + L1M1 LINE L1 11 414 -7151 1954 137 11 3 chr1 119918491 119918776 -162274888 - AluJb SINE Alu -25 287 1 13678 148 127 74 chr1 119918776 119920832 -162272832 + L1M1 LINE L1 414 2915 -4650 1180 84 0 0 chr1 119920832 119920986 -162272678 - AluY SINE Alu -8 303 150 13678 148 127 74 chr1 119920986 119922161 -162271503 + L1M1 LINE L1 2915 4026 -3539 12324 196 35 28 chr1 119922160 119926756 -162266908 + L1PA15 LINE L1 44 4606 -2997 * 1705 174 0 56 chr1 119926756 119927060 -162266604 + AluJb SINE Alu 1 287 -25 12324 196 35 28 chr1 119927060 119928780 -162264884 + L1PA15 LINE L1 4606 6312 -1291 2747 82 3 0 chr1 119928780 119929134 -162264530 + THE1A LTR MaLR 1 355 0 11690 103 2 0 chr1 119929135 119930710 -162262954 + THE1A-int LTR MaLR 2 1580 0 2679 85 8 0 chr1 119930710 119931062 -162262602 + THE1A LTR MaLR 1 355 0 12324 196 35 28 chr1 119931062 119931800 -162261864 + L1PA15 LINE L1 6311 7602 -1 238 193 108 0 chr1 119931966 119932049 -162261615 + L1MDa LINE L1 1289 1380 -5160 415 277 64 40 chr1 119932072 119932274 -162261390 + L1MDa LINE L1 1432 1638 -4892 403 127 68 0 chr1 119932320 119932438 -162261226 + (TA)n Simple_repeat Simple_repeat 1 126 0 1313 211 48 10 chr1 119932453 119932747 -162260917 - AluJb SINE Alu -7 305 1 801 154 13 214 chr1 119932832 119933131 -162260533 - MER8 DNA MER2_type 0 239 1 357 353 49 40 chr1 119933166 119933242 -162260422 + HAL1 LINE L1 1529 1603 -904 2417 81 0 0 chr1 119933242 119933550 -162260114 + AluY SINE Alu 1 308 -3 357 353 49 40 chr1 119933550 119933697 -162259967 + HAL1 LINE L1 1603 1754 -753 25 0 0 0 chr1 119933719 119933744 -162259920 + AT_rich Low_complexity Low_complexity 1 25 0 348 285 71 70 chr1 119933927 119934488 -162259176 + L1MDa LINE L1 2799 3360 -3180 423 188 52 10 chr1 119934610 119934649 -162259015 - MLT2B3 LTR ERVL 0 554 518 521 55 14 0 chr1 119934649 119934722 -162258942 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 423 188 52 10 chr1 119934722 119934778 -162258886 - MLT2B3 LTR ERVL -36 518 455 * 487 178 11 0 chr1 119934750 119934840 -162258824 - MSTC LTR MaLR -74 354 264 347 153 0 0 chr1 119934831 119934890 -162258774 - MER116 DNA Mariner -17 63 5 * 738 224 32 6 chr1 119934893 119935049 -162258615 - MIR SINE MIR -101 161 2 535 231 43 34 chr1 119935136 119935344 -162258320 + L1MB8 LINE L1 5956 6165 -13 692 344 58 31 chr1 119935402 119935957 -162257707 + L1MDa LINE L1 4414 4983 -1557 799 225 149 40 chr1 119935957 119936286 -162257378 + MLT1A1 LTR MaLR 1 365 0 2931 206 17 15 chr1 119936286 119936941 -162256723 + MLT1A1-int LTR MaLR 1 656 -1079 322 283 0 0 chr1 119937132 119937231 -162256433 + MLT1A1-int LTR MaLR 687 785 -950 2012 192 58 5 chr1 119937340 119937752 -162255912 + MLT1A1-int LTR MaLR 1302 1735 0 1340 209 28 18 chr1 119937752 119938101 -162255563 + MLT1A1 LTR MaLR 1 354 -11 12159 99 1 0 chr1 119938249 119940063 -162253601 - L1PA8 LINE L1 -1250 4896 3081 6458 63 45 0 chr1 119940063 119941276 -162252388 + L1PA8 LINE L1 4892 6153 -19 218 31 0 31 chr1 119941279 119941311 -162252353 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 521 319 44 10 chr1 119941339 119941749 -162251915 + L1MDa LINE L1 5088 5511 -1029 764 264 14 27 chr1 119941992 119942238 -162251426 + L1MEc LINE L1 1615 1858 -4538 1717 177 33 0 chr1 119942238 119942538 -162251126 + AluSx SINE Alu 1 310 -2 764 264 14 27 chr1 119942538 119942583 -162251081 + L1MEc LINE L1 1858 1902 -4494 22 0 0 0 chr1 119942583 119942605 -162251059 + AT_rich Low_complexity Low_complexity 1 22 0 5336 109 29 2 chr1 119942605 119942963 -162250701 - L1PB1 LINE L1 0 6151 5804 198 0 0 0 chr1 119942963 119942985 -162250679 + (TG)n Simple_repeat Simple_repeat 2 23 0 5336 109 29 2 chr1 119942985 119943491 -162250173 - L1PB1 LINE L1 -347 5804 5264 2651 201 22 15 chr1 119943489 119944176 -162249488 + L1 LINE L1 4640 5331 -815 * 14605 111 9 8 chr1 119944176 119946531 -162247133 + L1PA8 LINE L1 1608 3964 -2182 3831 24 7 0 chr1 119946531 119946979 -162246685 + L1PA3 LINE L1 6094 6546 -3 2830 120 4 11 chr1 119946979 119946998 -162246666 + L1PA3 LINE L1 5680 5698 -847 8719 119 3 15 chr1 119946998 119948486 -162245178 + L1PA8 LINE L1 3950 5408 -764 2505 64 0 10 chr1 119948486 119948798 -162244866 + AluY SINE Alu 1 309 -2 8719 119 3 15 chr1 119948798 119949542 -162244122 + L1PA8 LINE L1 5408 6159 -13 2830 120 4 11 chr1 119949542 119949999 -162243665 + L1PA3 LINE L1 5698 6159 -386 286 131 49 0 chr1 119950132 119950193 -162243471 + GA-rich Low_complexity Low_complexity 3 66 0 9596 183 42 13 chr1 119950195 119952281 -162241383 + L1M2 LINE L1 3020 5193 -1119 2205 106 7 7 chr1 119952281 119952584 -162241080 + AluSq SINE Alu 1 303 -10 9596 183 42 13 chr1 119952584 119953171 -162240493 + L1M2 LINE L1 5193 5761 -551 358 211 0 0 chr1 119953173 119953244 -162240420 - L1PA16 LINE L1 -232 5934 5864 * 1059 228 5 67 chr1 119953231 119953743 -162239921 - L1PA16 LINE L1 -1618 4528 4083 380 257 13 0 chr1 119953811 119953963 -162239701 + L1P LINE L1 3046 3199 -2947 2962 204 28 7 chr1 119953966 119954658 -162239006 + L1P LINE L1 3378 4083 -2063 1666 270 76 20 chr1 119954652 119955535 -162238129 + L1ME1 LINE L1 5121 6064 -102 * 1944 152 3 0 chr1 119955535 119955837 -162237827 - AluJo SINE Alu -9 303 1 1666 270 76 20 chr1 119955837 119955939 -162237725 + L1ME1 LINE L1 6064 6159 -7 2116 249 43 46 chr1 119956006 119957031 -162236633 + L1ME1 LINE L1 3836 4857 -1289 2491 254 73 16 chr1 119957098 119958033 -162235631 + L1ME1 LINE L1 5170 6161 -5 884 283 87 18 chr1 119958051 119958606 -162235058 + L1M4 LINE L1 4329 4921 -1225 1107 172 84 23 chr1 119958611 119958826 -162234838 + AluJo SINE Alu 73 300 -12 262 40 0 60 chr1 119958921 119958971 -162234693 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 298 263 48 5 chr1 119959048 119959157 -162234507 + MIR SINE MIR 30 143 -67 292 301 116 35 chr1 119959182 119959355 -162234309 + MER5A DNA MER1_type 3 189 0 188 313 97 35 chr1 119960909 119961053 -162232611 + MIR SINE MIR 110 262 0 263 299 39 13 chr1 119961133 119961210 -162232454 + MIR3 SINE MIR 82 160 -48 447 68 0 0 chr1 119961697 119961756 -162231908 + (TA)n Simple_repeat Simple_repeat 2 60 0 547 252 7 14 chr1 119963757 119963904 -162229760 + MIR SINE MIR 96 241 -21 251 333 17 25 chr1 119964187 119964307 -162229357 + MIR SINE MIR 28 146 -116 361 217 11 0 chr1 119964813 119964905 -162228759 - L1MB5 LINE L1 -9 6165 6073 420 147 0 0 chr1 119965243 119965318 -162228346 + (TG)n Simple_repeat Simple_repeat 2 76 0 220 324 63 78 chr1 119965983 119966125 -162227539 + MIR3 SINE MIR 2 141 -67 21 0 0 0 chr1 119967269 119967290 -162226374 + AT_rich Low_complexity Low_complexity 1 21 0 1707 173 30 3 chr1 119968018 119968431 -162225233 + AluJb SINE Alu 1 421 0 21 36 0 0 chr1 119969715 119969743 -162223921 + AT_rich Low_complexity Low_complexity 1 28 0 215 59 0 29 chr1 119972038 119972072 -162221592 + (TC)n Simple_repeat Simple_repeat 2 34 0 2737 139 94 14 chr1 119974898 119975386 -162218278 + MER1A DNA MER1_type 1 527 -2 1590 201 27 0 chr1 119975866 119976160 -162217504 + AluJb SINE Alu 2 303 -9 273 264 54 88 chr1 119977877 119978025 -162215639 + MIR SINE MIR 22 164 -98 504 296 12 17 chr1 119981100 119981272 -162212392 - MER5B DNA MER1_type -1 177 7 32 0 0 0 chr1 119982126 119982158 -162211506 + AT_rich Low_complexity Low_complexity 1 32 0 256 345 40 14 chr1 119982313 119982461 -162211203 + MIR3 SINE MIR 50 201 -7 278 306 17 40 chr1 119983306 119983479 -162210185 + L1MC4 LINE L1 7460 7628 -414 595 289 66 56 chr1 119983489 119984021 -162209643 - L1MC4 LINE L1 -408 7634 7098 21 0 0 0 chr1 119984143 119984164 -162209500 + AT_rich Low_complexity Low_complexity 1 21 0 251 225 0 14 chr1 119985473 119985544 -162208120 - L1MC5 LINE L1 -59 7902 7833 238 197 40 0 chr1 119985594 119985670 -162207994 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 448 301 41 5 chr1 119985756 119985952 -162207712 - MLT2B1 LTR ERVL -317 203 1 928 254 40 3 chr1 119985952 119986255 -162207409 - L1M4 LINE L1 -889 5257 4944 3141 89 19 23 chr1 119986270 119986699 -162206965 - L1PA11 LINE L1 -2 6172 5746 448 286 18 26 chr1 119986699 119986949 -162206715 + L1M4 LINE L1 1346 1598 -4786 3432 242 51 2 chr1 119986970 119987806 -162205858 + L1M4 LINE L1 3688 4564 -1818 238 125 0 0 chr1 119987807 119987839 -162205825 - Tigger4(Zombi) DNA MER2_type -2698 33 2 25 51 0 0 chr1 119988104 119988143 -162205521 + AT_rich Low_complexity Low_complexity 1 39 0 1948 147 3 0 chr1 119988468 119988753 -162204911 + AluSx SINE Alu 5 290 -22 864 175 0 7 chr1 119988892 119989035 -162204629 - FRAM SINE Alu -25 151 10 301 311 128 12 chr1 119989445 119989609 -162204055 + MIR SINE MIR 34 216 -46 2214 143 76 0 chr1 119990580 119990987 -162202677 + L1MB3 LINE L1 5745 6182 -1 1720 181 33 3 chr1 119990990 119991293 -162202371 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 119991467 119991489 -162202175 + AT_rich Low_complexity Low_complexity 1 22 0 464 286 0 41 chr1 119993225 119993372 -162200292 + L2 LINE L2 3172 3312 -1 4224 218 94 15 chr1 119994958 119996080 -162197584 - L1MC4 LINE L1 -385 7657 6447 290 87 22 0 chr1 119996194 119996240 -162197424 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 31256 116 12 61 chr1 119996762 120003230 -162190434 + L1PA7 LINE L1 12 6150 -4 554 139 247 0 chr1 120003868 120004034 -162189630 - MER5C DNA MER1_type -66 258 52 428 246 66 11 chr1 120004078 120004215 -162189449 - MER5A DNA MER1_type -42 136 6 854 225 160 19 chr1 120004345 120004761 -162188903 - L1ME1 LINE L1 -10 6168 5661 1136 82 14 0 chr1 120004820 120004967 -162188697 + AluSg/x SINE Alu 154 302 -8 187 254 73 55 chr1 120005452 120005562 -162188102 - MIR SINE MIR -52 210 99 354 286 154 22 chr1 120007491 120007764 -162185900 - L1M4 LINE L1 -2660 3486 3178 317 284 18 89 chr1 120007785 120007954 -162185710 - LTR16B LTR ERVL -307 157 1 * 580 126 0 11 chr1 120007954 120008035 -162185629 + Charlie1 DNA MER1_type 2682 2761 0 479 293 87 45 chr1 120008041 120008376 -162185288 - L1ME LINE L1 -297 5824 5476 2636 154 13 27 chr1 120008415 120008864 -162184800 - MSTB2 LTR MaLR 0 457 15 1325 154 5 5 chr1 120008864 120009078 -162184586 - MLT2B1 LTR ERVL -306 214 1 1206 206 36 20 chr1 120009853 120010105 -162183559 + MLT1A1 LTR MaLR 110 365 0 235 274 27 41 chr1 120010396 120010469 -162183195 + L3b LINE CR1 1509 1580 -3 1958 166 0 3 chr1 120010641 120010942 -162182722 - AluSx SINE Alu -12 300 1 304 323 130 0 chr1 120011695 120011887 -162181777 + MIR SINE MIR 12 228 -34 2477 161 12 2 chr1 120013057 120013467 -162180197 + L1PA16 LINE L1 5737 6150 -16 2065 132 28 0 chr1 120015232 120015520 -162178144 + AluSx SINE Alu 4 299 -13 2991 191 29 9 chr1 120016071 120016617 -162177047 + MER89 LTR ERV1 1 557 -2 575 182 0 0 chr1 120016672 120016760 -162176904 - Tigger7 DNA MER2_type -1 2486 2399 186 43 0 0 chr1 120016765 120016788 -162176876 + (TA)n Simple_repeat Simple_repeat 2 24 0 2025 124 3 10 chr1 120016830 120017128 -162176536 - AluSx SINE Alu -16 296 1 1618 193 8 0 chr1 120017143 120017408 -162176256 - Tigger7 DNA MER2_type -2220 267 1 612 218 57 38 chr1 120017702 120018069 -162175595 + LTR45 LTR ERV1 241 524 -1 739 184 133 6 chr1 120018174 120018269 -162175395 - MER7A DNA MER2_type -2859 179 97 2419 131 21 13 chr1 120018269 120018651 -162175013 - L1PA16 LINE L1 -5 6161 5777 739 184 133 6 chr1 120018651 120018713 -162174951 - MER7A DNA MER2_type -2941 97 4 1446 256 136 33 chr1 120018733 120019492 -162174172 - L1M4 LINE L1 -2354 3792 2956 2369 95 3 7 chr1 120019557 120019863 -162173801 - AluSp SINE Alu -8 305 1 1507 173 15 7 chr1 120020082 120020353 -162173311 - AluJo SINE Alu -8 304 32 22 0 0 0 chr1 120021139 120021161 -162172503 + AT_rich Low_complexity Low_complexity 1 22 0 1079 160 140 9 chr1 120021397 120021656 -162172008 - MSTC LTR MaLR 0 428 97 1102 234 9 9 chr1 120021843 120022065 -162171599 - MER58A DNA MER1_type -2 222 1 3228 203 52 28 chr1 120022647 120023283 -162170381 - MER82 DNA MER2_type 0 653 3 2108 137 0 0 chr1 120023801 120024108 -162169556 - AluSx SINE Alu -5 307 1 1348 220 120 9 chr1 120025810 120025991 -162167673 - MLT1B LTR MaLR -1 389 230 459 0 0 0 chr1 120025991 120026042 -162167622 + (GA)n Simple_repeat Simple_repeat 2 52 0 1348 220 120 9 chr1 120026042 120026210 -162167454 - MLT1B LTR MaLR -160 230 1 23 0 0 0 chr1 120026251 120026274 -162167390 + AT_rich Low_complexity Low_complexity 1 23 0 2227 108 0 3 chr1 120026280 120026577 -162167087 - AluSx SINE Alu -16 296 1 443 134 15 0 chr1 120026579 120026646 -162167018 - L1MB7 LINE L1 -12 6172 6105 4448 193 49 62 chr1 120026656 120027834 -162165830 - L1MA8 LINE L1 0 7710 6518 2284 69 3 0 chr1 120027834 120028125 -162165539 - AluY SINE Alu -19 292 1 4448 193 49 62 chr1 120028125 120028451 -162165213 - L1MA8 LINE L1 -1192 6518 6189 2252 92 3 0 chr1 120028451 120028775 -162164889 - AluSc SINE Alu 0 309 1 4448 193 49 62 chr1 120028775 120030798 -162162866 - L1MA8 LINE L1 -1521 6189 2008 619 198 8 0 chr1 120030814 120030940 -162162724 - L1M4 LINE L1 -577 5607 5481 1215 167 28 5 chr1 120030940 120031155 -162162509 - AluJb SINE Alu 0 312 93 2536 109 11 11 chr1 120031158 120031533 -162162131 - THE1C LTR MaLR 0 375 1 9445 117 36 33 chr1 120031539 120033108 -162160556 - THE1C-int LTR MaLR -6 1574 1 2521 107 16 11 chr1 120033108 120033481 -162160183 - THE1C LTR MaLR 0 375 1 573 121 0 0 chr1 120033482 120033565 -162160099 - AluJb SINE Alu -219 93 11 225 122 24 0 chr1 120033603 120033644 -162160020 + MLT2B1 LTR ERVL 479 520 0 289 172 52 0 chr1 120033644 120033702 -162159962 - L1P1 LINE L1 -694 5461 5401 219 69 0 0 chr1 120033722 120033751 -162159913 + (TTA)n Simple_repeat Simple_repeat 1 29 0 1982 178 112 0 chr1 120033967 120034350 -162159314 + MSTB LTR MaLR 1 426 0 728 211 141 13 chr1 120034706 120034933 -162158731 + MIR SINE MIR 4 259 -3 181 302 233 62 chr1 120034941 120035070 -162158594 + L2 LINE L2 3122 3272 0 32 67 0 0 chr1 120035937 120035997 -162157667 + AT_rich Low_complexity Low_complexity 1 60 0 537 306 100 16 chr1 120036063 120036642 -162157022 + L1MC/D LINE L1 2509 3136 -3010 454 285 164 10 chr1 120036696 120037190 -162156474 + L1MC/D LINE L1 3229 3798 -2348 628 248 101 53 chr1 120037236 120038106 -162155558 + L1MC/D LINE L1 4532 5446 -746 257 292 167 10 chr1 120038170 120038266 -162155398 - L2 LINE L2 0 3313 3203 299 237 122 30 chr1 120038602 120038733 -162154931 - L2 LINE L2 0 3313 3171 40762 34 23 1 chr1 120038850 120044863 -162148801 + L1PA3 LINE L1 10 6155 0 233 192 19 0 chr1 120045199 120045251 -162148413 + Charlie3 DNA MER1_type 2336 2388 -322 11116 29 4 101 chr1 120045660 120047195 -162146469 + SVA Other Other 1 1386 0 2382 74 3 6 chr1 120047611 120047939 -162145725 - AluY SINE Alu 0 327 1 23 0 0 0 chr1 120048488 120048511 -162145153 + AT_rich Low_complexity Low_complexity 1 23 0 195 306 0 0 chr1 120049612 120049661 -162144003 + MIR SINE MIR 48 96 -166 329 205 96 0 chr1 120049712 120049795 -162143869 - MIR SINE MIR -62 200 110 190 302 60 74 chr1 120049875 120050024 -162143640 + MIR SINE MIR 106 252 -10 21 0 0 0 chr1 120050285 120050306 -162143358 + AT_rich Low_complexity Low_complexity 1 21 0 954 233 125 22 chr1 120050340 120050653 -162143011 - MER77 LTR ERV1 -6 599 255 318 26 0 0 chr1 120050670 120050709 -162142955 + (TG)n Simple_repeat Simple_repeat 2 40 0 33 66 0 0 chr1 120051087 120051148 -162142516 + AT_rich Low_complexity Low_complexity 1 61 0 305 289 70 0 chr1 120052081 120052195 -162141469 + L2 LINE L2 3151 3272 0 21 0 0 0 chr1 120052571 120052592 -162141072 + AT_rich Low_complexity Low_complexity 1 21 0 1750 163 69 0 chr1 120054014 120054302 -162139362 + AluJb SINE Alu 1 308 -4 1002 316 145 55 chr1 120054302 120055408 -162138256 - L2 LINE L2 -338 2976 1679 2011 155 0 0 chr1 120055408 120055742 -162137922 - AluSx SINE Alu 0 334 1 1002 316 145 55 chr1 120055742 120056231 -162137433 - L2 LINE L2 -1635 1679 1236 320 186 49 0 chr1 120056249 120056327 -162137337 + MIR SINE MIR 79 162 -46 552 308 122 14 chr1 120057108 120057329 -162136335 - MIR SINE MIR 0 262 18 1298 209 34 57 chr1 120057856 120058239 -162135425 - MLT1A2 LTR MaLR 0 374 1 1624 249 90 6 chr1 120058421 120058919 -162134745 - MLT1F LTR MaLR -1 541 2 485 214 21 88 chr1 120059053 120059120 -162134544 + MER58C DNA MER1_type 37 107 -2313 15791 94 22 0 chr1 120059120 120062217 -162131447 + L1PA7 LINE L1 3022 6141 -13 485 214 21 88 chr1 120062217 120062341 -162131323 + MER58C DNA MER1_type 107 215 0 191 319 0 127 chr1 120062524 120062690 -162130974 + L2 LINE L2 2373 2517 -797 292 349 62 0 chr1 120063522 120063651 -162130013 - L2 LINE L2 0 3272 3136 369 175 0 0 chr1 120063776 120063856 -162129808 - L1MB8 LINE L1 0 6178 6099 3277 185 29 24 chr1 120063882 120064597 -162129067 - L1MB4 LINE L1 -20 6160 5442 3137 197 19 14 chr1 120064635 120065300 -162128364 - L1MB2 LINE L1 -7 6400 5732 1483 231 41 18 chr1 120065305 120066107 -162127557 - L1MB2 LINE L1 -3588 2794 1975 871 258 60 10 chr1 120066144 120066458 -162127206 - L1MB2 LINE L1 -4522 1862 1533 2020 113 56 0 chr1 120066749 120067033 -162126631 + AluSq SINE Alu 1 300 -13 212 247 117 0 chr1 120067049 120067126 -162126538 + MIR SINE MIR 124 209 -53 21 0 0 0 chr1 120067148 120067169 -162126495 + AT_rich Low_complexity Low_complexity 1 21 0 597 229 65 7 chr1 120067703 120067856 -162125808 - MER106B DNA MER1_type 0 1059 898 463 330 114 57 chr1 120068384 120068751 -162124913 - L2 LINE L2 -14 3258 2871 645 304 18 11 chr1 120068772 120068981 -162124683 - MIR SINE MIR -48 214 1 298 346 198 5 chr1 120069423 120069625 -162124039 + MIR SINE MIR 20 260 -2 22 0 0 0 chr1 120071900 120071922 -162121742 + AT_rich Low_complexity Low_complexity 1 22 0 1761 144 126 33 chr1 120073083 120073416 -162120248 + THE1B LTR MaLR 1 364 0 11616 90 11 2 chr1 120073416 120074982 -162118682 + THE1A-int LTR MaLR 1 1580 0 2775 71 3 0 chr1 120074982 120075336 -162118328 + THE1A LTR MaLR 1 355 0 398 230 241 32 chr1 120075349 120075718 -162117946 - L2 LINE L2 -60 3253 2808 354 195 13 0 chr1 120078144 120078221 -162115443 - L1MA10 LINE L1 -24 6310 6233 2401 90 0 0 chr1 120078274 120078574 -162115090 - AluSg SINE Alu -10 300 1 457 221 203 0 chr1 120078585 120078748 -162114916 - L1ME2 LINE L1 -197 5967 5772 2181 107 3 7 chr1 120078794 120079093 -162114571 + AluSg SINE Alu 1 298 -12 252 197 77 60 chr1 120079198 120079263 -162114401 + HAL1 LINE L1 2020 2089 -418 1902 149 3 26 chr1 120079263 120079572 -162114092 + AluJb SINE Alu 1 302 -10 252 197 77 60 chr1 120079572 120079623 -162114041 + HAL1 LINE L1 2089 2138 -369 264 246 0 18 chr1 120080088 120080145 -162113519 + LTR16C LTR ERVL 436 491 0 359 277 7 36 chr1 120080167 120080304 -162113360 + HAL1 LINE L1 2306 2438 -69 1563 179 3 42 chr1 120082206 120082518 -162111146 + AluJo SINE Alu 1 300 -12 488 193 18 44 chr1 120082722 120082836 -162110828 - Tigger5 DNA MER2_type -1 2322 2212 279 189 19 19 chr1 120082825 120082878 -162110786 - Tigger5 DNA MER2_type -2270 53 1 * 876 126 50 71 chr1 120082994 120083176 -162110488 + MER5B DNA MER1_type 1 178 0 846 283 94 40 chr1 120083290 120083348 -162110316 - L2 LINE L2 -785 2529 2476 1876 126 0 4 chr1 120083348 120083618 -162110046 + AluSx SINE Alu 44 312 0 846 283 94 40 chr1 120083618 120084058 -162109606 - L2 LINE L2 -838 2476 2004 696 148 0 49 chr1 120084847 120084969 -162108695 + FLAM_A SINE Alu 12 127 -15 256 320 128 48 chr1 120085887 120086492 -162107172 - L2 LINE L2 -4 3268 2617 313 264 0 14 chr1 120086503 120086575 -162107089 + L2 LINE L2 3241 3311 -2 423 312 150 11 chr1 120086721 120087080 -162106584 - L2 LINE L2 -1219 2095 1687 246 321 96 43 chr1 120087247 120087434 -162106230 + MIR3 SINE MIR 4 200 -8 242 333 10 0 chr1 120088284 120088383 -162105281 + L2 LINE L2 2430 2529 -785 236 348 148 9 chr1 120088801 120088916 -162104748 + L2 LINE L2 3137 3267 -5 479 341 23 23 chr1 120089045 120089262 -162104402 - MIR SINE MIR 0 262 46 6394 64 5 9 chr1 120089345 120090128 -162103536 + L1PA8 LINE L1 5388 6167 -5 2552 234 31 30 chr1 120090208 120090846 -162102818 - MER21B LTR ERV1 -11 852 214 241 219 68 0 chr1 120090950 120091023 -162102641 - MLT1J LTR MaLR -35 476 399 358 272 109 60 chr1 120091453 120091523 -162102141 - L1M4 LINE L1 -893 5253 5188 1058 173 18 53 chr1 120091523 120091748 -162101916 - MER20 DNA MER1_type -2 217 1 358 272 109 60 chr1 120091748 120091960 -162101704 - L1M4 LINE L1 -958 5188 4957 309 109 0 0 chr1 120092602 120092648 -162101016 + (A)n Simple_repeat Simple_repeat 1 46 0 737 218 0 17 chr1 120092666 120092845 -162100819 + MER96B DNA MER1_type? 3 178 -239 237 62 0 0 chr1 120092869 120092901 -162100763 + MER96B DNA MER1_type? 144 175 0 470 261 60 50 chr1 120092903 120093121 -162100543 - MLT1L LTR MaLR -49 566 347 289 304 82 73 chr1 120093254 120093387 -162100277 - MIR SINE MIR -40 222 85 2365 99 0 0 chr1 120093387 120093691 -162099973 + AluSc SINE Alu 1 304 -5 289 304 82 73 chr1 120093691 120093777 -162099887 - MIR SINE MIR -177 85 1 2134 120 0 0 chr1 120095463 120095763 -162097901 - AluSg SINE Alu -10 300 1 1082 90 0 0 chr1 120095765 120095899 -162097765 - AluSq/x SINE Alu -178 134 1 2044 134 142 31 chr1 120095920 120096301 -162097363 + MSTA LTR MaLR 6 428 0 276 308 0 13 chr1 120097436 120097514 -162096150 - MIR SINE MIR -165 97 21 2507 156 92 55 chr1 120097681 120098226 -162095438 - MER34B LTR ERV1 0 565 1 366 283 58 0 chr1 120098234 120098354 -162095310 - MIR SINE MIR -57 205 79 908 67 0 0 chr1 120098967 120099087 -162094577 - L1M LINE L1 -923 5379 5260 288 97 0 33 chr1 120099089 120099149 -162094515 + L1MA1 LINE L1 6246 6305 0 21 0 0 0 chr1 120099149 120099170 -162094494 + AT_rich Low_complexity Low_complexity 1 21 0 204 274 48 36 chr1 120099802 120099886 -162093778 - L2 LINE L2 0 3272 3188 27 29 0 0 chr1 120099976 120100010 -162093654 + AT_rich Low_complexity Low_complexity 1 34 0 1568 282 81 46 chr1 120100290 120101491 -162092173 - L1M4 LINE L1 -1561 4585 3343 1129 291 125 25 chr1 120101479 120102256 -162091408 - L1MC4a LINE L1 -1005 6803 5949 * 283 264 0 14 chr1 120102892 120102964 -162090700 - MLT1I LTR MaLR -7 402 332 301 279 36 57 chr1 120103060 120103200 -162090464 + LTR33A LTR ERVL 1 137 -386 957 158 0 36 chr1 120103466 120103631 -162090033 - FAM SINE Alu -1 48 1 318 315 102 62 chr1 120103677 120104226 -162089438 - L1MEd LINE L1 -5544 575 5 245 203 98 84 chr1 120104571 120104714 -162088950 + MER53 DNA DNA 45 189 0 248 176 0 0 chr1 120105436 120105487 -162088177 - L1MA8 LINE L1 0 6291 6241 2128 118 7 3 chr1 120106070 120106366 -162087298 - L1PA16 LINE L1 -9 6157 5861 807 255 65 66 chr1 120106611 120107012 -162086652 + MLT1H LTR MaLR 1 572 -23 378 282 58 39 chr1 120107109 120107265 -162086399 + MER117 DNA MER1_type 35 193 -4 339 298 155 6 chr1 120107918 120108079 -162085585 + MIR SINE MIR 8 192 -70 609 66 0 0 chr1 120108092 120108168 -162085496 - Alu SINE Alu -5 307 232 249 250 54 0 chr1 120108805 120108861 -162084803 - L3 LINE CR1 -20 1557 1499 459 274 46 20 chr1 120109014 120109167 -162084497 - MER103 DNA DNA -8 158 2 1949 207 66 7 chr1 120110039 120110479 -162083185 - MLT1C LTR MaLR 0 467 2 251 314 105 9 chr1 120110785 120110890 -162082774 - L2 LINE L2 -2 3311 3197 352 296 5 103 chr1 120110920 120111123 -162082541 - L2 LINE L2 -100 3172 2990 552 312 161 22 chr1 120111327 120111866 -162081798 - L1ME4a LINE L1 0 6121 5508 433 293 144 58 chr1 120111950 120112185 -162081479 - L1ME4a LINE L1 -749 5397 5184 297 0 0 0 chr1 120112185 120112218 -162081446 + (TC)n Simple_repeat Simple_repeat 2 34 0 297 0 0 0 chr1 120112217 120112250 -162081414 + (TA)n Simple_repeat Simple_repeat 1 33 0 433 293 144 58 chr1 120112218 120112558 -162081106 - L1ME4a LINE L1 -962 5184 4783 291 356 44 20 chr1 120112570 120113022 -162080642 - L1ME4a LINE L1 -1534 4612 4150 470 310 47 31 chr1 120113052 120113307 -162080357 - L2 LINE L2 -580 2734 2476 217 164 27 27 chr1 120113966 120114039 -162079625 + (CTATA)n Simple_repeat Simple_repeat 1 73 0 391 184 10 10 chr1 120114484 120114582 -162079082 + GA-rich Low_complexity Low_complexity 2 99 0 239 212 94 0 chr1 120115530 120115615 -162078049 - L1MC4 LINE L1 -1335 6707 6615 1038 149 0 12 chr1 120115615 120115776 -162077888 - AluSg/x SINE Alu -17 293 135 460 243 132 21 chr1 120115831 120115975 -162077689 + MIR SINE MIR 30 189 -73 512 300 33 97 chr1 120116010 120116310 -162077354 + L2 LINE L2 2992 3272 0 24 32 0 0 chr1 120116458 120116489 -162077175 + AT_rich Low_complexity Low_complexity 1 31 0 970 95 8 0 chr1 120117719 120117845 -162075819 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr1 120117845 120117873 -162075791 + AT_rich Low_complexity Low_complexity 1 28 0 524 250 8 38 chr1 120119803 120119935 -162073729 - MER94 DNA DNA -3 131 4 466 236 123 32 chr1 120121941 120122223 -162071441 - L1ME4a LINE L1 -187 5934 5609 22 35 0 0 chr1 120122443 120122472 -162071192 + AT_rich Low_complexity Low_complexity 1 29 0 192 359 16 0 chr1 120123063 120123127 -162070537 + L3 LINE CR1 984 1048 -529 411 352 89 28 chr1 120123132 120123574 -162070090 - L2 LINE L2 -5 3267 2791 1016 268 119 30 chr1 120123576 120124038 -162069626 + MLT1J LTR MaLR 1 503 -8 2512 215 118 22 chr1 120124231 120124830 -162068834 + MLT2F LTR ERVL 5 661 -2 385 227 62 0 chr1 120124846 120124943 -162068721 + L2 LINE L2 3208 3310 -3 288 279 73 15 chr1 120124943 120125079 -162068585 - L2 LINE L2 -774 2540 2397 308 306 53 24 chr1 120125251 120125421 -162068243 - L2 LINE L2 -943 2371 2197 257 216 0 0 chr1 120125464 120125515 -162068149 - MER92A LTR ERV1 -300 112 62 206 278 165 44 chr1 120125515 120125763 -162067901 - L2 LINE L2 -1229 2085 1808 333 327 103 15 chr1 120125830 120126160 -162067504 - L2 LINE L2 -2373 941 583 606 280 23 6 chr1 120126361 120126536 -162067128 + MER5B DNA MER1_type 1 178 0 750 319 111 24 chr1 120126814 120127318 -162066346 + L3 LINE CR1 1019 1566 -11 9113 170 84 83 chr1 120129163 120130075 -162063589 + L1MC3 LINE L1 5318 6228 -1557 1877 122 4 0 chr1 120130075 120130338 -162063326 + AluSx SINE Alu 29 292 -20 9113 170 84 83 chr1 120130338 120130989 -162062675 + L1MC3 LINE L1 6228 6877 -908 336 24 0 0 chr1 120130989 120131030 -162062634 + (CA)n Simple_repeat Simple_repeat 2 42 0 9113 170 84 83 chr1 120131030 120131267 -162062397 + L1MC3 LINE L1 6877 7112 -673 353 218 0 46 chr1 120131267 120131354 -162062310 + MLT1F1 LTR MaLR 52 134 -433 9113 170 84 83 chr1 120131354 120131739 -162061925 + L1MC3 LINE L1 7112 7596 -189 926 158 87 0 chr1 120131739 120131922 -162061742 + L1MC2 LINE L1 6136 6334 -10 9113 170 84 83 chr1 120131922 120131938 -162061726 + L1MC3 LINE L1 7596 7610 -175 185 0 40 0 chr1 120132595 120132620 -162061044 + (CAA)n Simple_repeat Simple_repeat 2 27 0 854 191 62 11 chr1 120132818 120132996 -162060668 + MER5A DNA MER1_type 1 187 -2 296 260 0 0 chr1 120133448 120133521 -162060143 + HsTC2 DNA Tc2 2 74 -1824 1582 261 52 33 chr1 120133635 120134149 -162059515 - LTR45 LTR ERV1 -1 524 1 756 247 32 14 chr1 120134286 120134505 -162059159 + L1MEc LINE L1 31 253 -6143 283 191 15 168 chr1 120135154 120135285 -162058379 + MIR3 SINE MIR 15 125 -83 * 344 336 0 9 chr1 120135265 120135372 -162058292 + MER5B DNA MER1_type 56 161 -17 2230 99 3 3 chr1 120135975 120136269 -162057395 + AluSq SINE Alu 1 294 -19 249 248 179 26 chr1 120136367 120136484 -162057180 - L3 LINE CR1 -1 1576 1442 516 299 147 6 chr1 120136930 120137087 -162056577 + MER5A DNA MER1_type 9 187 -2 1459 259 112 60 chr1 120137147 120137591 -162056073 - HAL1 LINE L1 -3 2504 2084 210 37 0 0 chr1 120137591 120137618 -162056046 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1917 141 0 23 chr1 120137625 120137924 -162055740 - AluSx SINE Alu -15 297 6 1459 259 112 60 chr1 120137924 120138269 -162055395 - HAL1 LINE L1 -428 2079 1666 282 333 10 10 chr1 120138333 120138429 -162055235 + MLT2F LTR ERVL 38 133 -530 1237 218 102 64 chr1 120139105 120139555 -162054109 + MLT1C LTR MaLR 1 467 0 572 334 84 48 chr1 120139559 120140113 -162053551 + HERVL LTR ERVL 1284 1895 -3815 1200 283 64 6 chr1 120140292 120140638 -162053026 + MLT1I LTR MaLR 44 409 0 1089 284 55 6 chr1 120140647 120141148 -162052516 + HERVL LTR ERVL 2046 2649 -3115 192 40 0 0 chr1 120141737 120141762 -162051902 + (CA)n Simple_repeat Simple_repeat 2 26 0 6333 103 26 0 chr1 120142907 120144109 -162049555 - L1PA15 LINE L1 0 6165 4936 2203 196 143 0 chr1 120144512 120144946 -162048718 - MLT1D LTR MaLR -7 498 3 23 0 0 0 chr1 120145014 120145037 -162048627 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr1 120145574 120145610 -162048054 + AT_rich Low_complexity Low_complexity 1 36 0 2487 58 3 26 chr1 120145771 120146082 -162047582 - AluY SINE Alu -7 304 1 2070 237 65 35 chr1 120146942 120147587 -162046077 - MER21B LTR ERV1 -124 739 76 2166 127 36 14 chr1 120147587 120147949 -162045715 - MLT1B LTR MaLR 0 390 21 244 313 0 0 chr1 120147962 120148029 -162045635 - MER21B LTR ERV1 -778 85 19 259 291 13 0 chr1 120149556 120149635 -162044029 + MIR3 SINE MIR 127 206 -2 471 157 24 0 chr1 120150040 120150123 -162043541 - MLT1L LTR MaLR -4 611 527 396 261 126 48 chr1 120150178 120150275 -162043389 - MLT1L LTR MaLR -221 394 306 5439 88 7 3 chr1 120150275 120150982 -162042682 - L1PA13 LINE L1 -3 6160 5451 396 261 126 48 chr1 120150982 120151091 -162042573 - MLT1L LTR MaLR -309 306 172 218 256 37 24 chr1 120151898 120151980 -162041684 + MIR SINE MIR 174 256 -6 195 270 80 140 chr1 120152187 120152387 -162041277 - L2 LINE L2 -58 3214 3027 567 197 2 1 chr1 120152476 120152592 -162041072 + L1P LINE L1 5010 5126 -1020 402 372 87 31 chr1 120152921 120153311 -162040353 + L2 LINE L2 79 490 -2824 326 246 33 3 chr1 120153552 120153673 -162039991 + MIR SINE MIR 85 250 -12 1002 281 86 51 chr1 120153695 120154384 -162039280 + L2 LINE L2 2595 3313 0 188 276 69 23 chr1 120156082 120156169 -162037495 + L2 LINE L2 3174 3264 -8 413 175 75 33 chr1 120156496 120156616 -162037048 - L1MC5 LINE L1 -36 7925 7801 244 292 150 9 chr1 120157453 120157566 -162036098 + LTR33A LTR ERVL 35 163 -360 1371 177 34 5 chr1 120157575 120158029 -162035635 - MLT1D LTR MaLR -8 497 1 803 219 65 5 chr1 120158058 120158273 -162035391 + LTR33A LTR ERVL 288 515 -8 307 339 69 8 chr1 120158646 120158776 -162034888 + MIR SINE MIR 54 191 -71 248 250 0 18 chr1 120158850 120158906 -162034758 - L2 LINE L2 -8 3305 3251 547 211 42 14 chr1 120159119 120159261 -162034403 - LTR33A LTR ERVL -3 520 375 279 268 86 134 chr1 120159268 120159701 -162033963 - L2 LINE L2 -350 2964 2553 288 278 24 32 chr1 120159722 120159848 -162033816 - L2 LINE L2 -896 2418 2294 663 239 174 5 chr1 120159952 120160170 -162033494 - MIR SINE MIR -19 243 13 209 229 202 9 chr1 120161233 120161342 -162032322 - L2 LINE L2 -2 3311 3182 285 298 79 79 chr1 120161438 120161616 -162032048 + L3 LINE CR1 1310 1487 -90 238 302 43 0 chr1 120163032 120163148 -162030516 - L1ME LINE L1 -316 5805 5685 1997 162 10 0 chr1 120164002 120164346 -162029318 + AluJo SINE Alu 1 347 0 344 261 68 57 chr1 120165799 120165962 -162027702 - MIR SINE MIR -65 143 16 198 307 126 31 chr1 120166310 120166437 -162027227 - L2 LINE L2 -197 3075 2937 1227 156 16 0 chr1 120166701 120166887 -162026777 - MER5A DNA MER1_type 0 189 1 1886 42 0 0 chr1 120166942 120167159 -162026505 + L1PA5 LINE L1 5938 6154 0 190 304 107 27 chr1 120168186 120168298 -162025366 + L2 LINE L2 2565 2685 -629 701 273 50 21 chr1 120168433 120168671 -162024993 - MIR SINE MIR 0 262 18 190 236 111 14 chr1 120168700 120168772 -162024892 + L2 LINE L2 2980 3058 -214 459 352 115 15 chr1 120169102 120169372 -162024292 - L2 LINE L2 -6 3266 2970 425 293 18 43 chr1 120169593 120169757 -162023907 - MIR SINE MIR -66 196 37 474 285 82 13 chr1 120169759 120169917 -162023747 - MIR SINE MIR -73 189 21 444 248 149 50 chr1 120170036 120170197 -162023467 + MER5A DNA MER1_type 9 185 -4 264 177 48 32 chr1 120170779 120170841 -162022823 - L2 LINE L2 0 3272 3210 1151 151 44 39 chr1 120171052 120171258 -162022406 + AluJo SINE Alu 76 282 -30 207 0 0 0 chr1 120171498 120171521 -162022143 + (TG)n Simple_repeat Simple_repeat 1 23 0 414 57 0 0 chr1 120171548 120171601 -162022063 + (TG)n Simple_repeat Simple_repeat 1 53 0 474 274 94 33 chr1 120172308 120172553 -162021111 + MIR SINE MIR 3 262 0 21 36 0 0 chr1 120173130 120173158 -162020506 + AT_rich Low_complexity Low_complexity 1 28 0 406 339 86 64 chr1 120173182 120173787 -162019877 - L2 LINE L2 -94 3178 2550 1728 180 7 14 chr1 120174087 120174382 -162019282 - AluJo SINE Alu -19 293 1 353 258 44 23 chr1 120174711 120174862 -162018802 + MLT2E LTR ERVL 18 180 -343 1707 173 0 24 chr1 120175092 120175387 -162018277 + AluJo SINE Alu 1 288 -24 1174 272 92 88 chr1 120175439 120175508 -162018156 + L2 LINE L2 2053 2120 -1194 2147 92 34 10 chr1 120175508 120175800 -162017864 + AluSg SINE Alu 1 299 -11 1174 272 92 88 chr1 120175800 120176141 -162017523 + L2 LINE L2 2120 2458 -856 183 42 0 0 chr1 120176141 120176165 -162017499 + (TTC)n Simple_repeat Simple_repeat 2 25 0 1174 272 92 88 chr1 120176165 120176178 -162017486 + L2 LINE L2 2458 2469 -845 2184 114 0 22 chr1 120176178 120176494 -162017170 - AluSx SINE Alu -3 309 1 1174 272 92 88 chr1 120176494 120176913 -162016751 + L2 LINE L2 2469 2901 -413 410 278 142 11 chr1 120177040 120177216 -162016448 + L2 LINE L2 3115 3313 0 216 375 39 19 chr1 120178010 120178114 -162015550 - L2 LINE L2 -4 3268 3163 252 279 0 63 chr1 120179877 120179988 -162013676 + MLT1H LTR MaLR 433 536 -13 1022 282 48 12 chr1 120180022 120180355 -162013309 + L2 LINE L2 714 1058 -2256 321 231 0 0 chr1 120180360 120180425 -162013239 - MIR SINE MIR 0 262 198 459 281 28 22 chr1 120180426 120180604 -162013060 - LTR16C LTR ERVL -1 490 312 821 273 5 0 chr1 120180968 120181166 -162012498 - MIR SINE MIR -59 203 5 317 260 13 0 chr1 120181609 120181686 -162011978 + L2 LINE L2 1425 1502 -1812 2115 116 33 3 chr1 120181687 120181988 -162011676 - AluSg SINE Alu 0 310 1 632 305 102 0 chr1 120182034 120182290 -162011374 + L2 LINE L2 2812 3093 -220 2900 83 12 0 chr1 120182479 120182878 -162010786 + MLT2A2 LTR ERVL 1 404 -49 210 37 0 0 chr1 120182878 120182905 -162010759 + (TG)n Simple_repeat Simple_repeat 2 28 0 366 80 0 0 chr1 120182921 120182971 -162010693 + (TA)n Simple_repeat Simple_repeat 2 51 0 373 91 0 0 chr1 120183004 120183059 -162010605 + MLT2A2 LTR ERVL 399 453 0 334 205 134 27 chr1 120183373 120183485 -162010179 - MIR SINE MIR -66 196 73 849 191 14 24 chr1 120184206 120184416 -162009248 - L1MB7 LINE L1 -11 6173 5966 802 80 0 0 chr1 120184416 120184516 -162009148 + AluS SINE Alu 1 100 -212 2309 118 0 6 chr1 120185220 120185535 -162008129 - AluSq SINE Alu 0 313 1 411 73 0 0 chr1 120185845 120185900 -162007764 + (TG)n Simple_repeat Simple_repeat 2 56 0 275 299 31 0 chr1 120186474 120186571 -162007093 + LTR67 LTR ERVL 458 557 0 702 310 69 30 chr1 120186863 120186982 -162006682 - L2 LINE L2 -2 3270 3157 842 226 14 10 chr1 120186982 120187190 -162006474 - MER3 DNA MER1_type 0 209 1 702 310 69 30 chr1 120187190 120187402 -162006262 - L2 LINE L2 -115 3157 2926 2536 216 23 25 chr1 120188350 120188905 -162004759 + MLT2B3 LTR ERVL 1 554 0 464 311 119 17 chr1 120189118 120189295 -162004369 - MIR3 SINE MIR -8 200 6 1606 91 5 0 chr1 120189304 120189525 -162004139 - L1PB1 LINE L1 -2 6149 5928 25 0 0 0 chr1 120189533 120189558 -162004106 + AT_rich Low_complexity Low_complexity 1 25 0 254 328 112 0 chr1 120189796 120189921 -162003743 + MIR SINE MIR 13 151 -111 403 229 43 36 chr1 120191379 120191519 -162002145 + MLT1K LTR MaLR 412 552 -36 278 291 60 0 chr1 120191907 120192024 -162001640 + L1ME LINE L1 5509 5632 -489 395 250 147 9 chr1 120192314 120192430 -162001234 + L2 LINE L2 3182 3313 0 25 51 0 0 chr1 120194702 120194741 -161998923 + AT_rich Low_complexity Low_complexity 1 39 0 546 278 120 37 chr1 120194841 120195349 -161998315 - L1ME4a LINE L1 -253 5868 5319 2837 88 3 0 chr1 120196138 120196512 -161997152 - THE1C LTR MaLR 0 375 1 189 121 0 0 chr1 120196513 120196546 -161997118 + (TG)n Simple_repeat Simple_repeat 2 34 0 1979 137 3 0 chr1 120198239 120198546 -161995118 - AluSq SINE Alu -5 308 1 810 216 12 12 chr1 120199114 120199285 -161994379 + FRAM SINE Alu 1 164 -12 37 81 0 0 chr1 120199658 120199744 -161993920 + AT_rich Low_complexity Low_complexity 1 86 0 210 310 186 16 chr1 120200038 120200167 -161993497 - MIR3 SINE MIR -27 181 31 207 0 0 0 chr1 120200733 120200756 -161992908 + (A)n Simple_repeat Simple_repeat 1 23 0 236 258 76 0 chr1 120202038 120202104 -161991560 + MIR SINE MIR 5 75 -187 644 265 76 20 chr1 120202105 120202354 -161991310 + L1MC4 LINE L1 6774 7036 -1006 2315 99 0 13 chr1 120202355 120202668 -161990996 - AluSc SINE Alu 0 309 1 520 174 0 0 chr1 120202793 120202879 -161990785 - L1PB4 LINE L1 -13 6143 6058 339 136 0 0 chr1 120202908 120202967 -161990697 + (GA)n Simple_repeat Simple_repeat 2 60 0 449 192 141 10 chr1 120204173 120204272 -161989392 - MIR SINE MIR -146 116 5 2266 104 3 19 chr1 120204304 120204622 -161989042 - AluSp SINE Alu 0 313 1 228 358 33 92 chr1 120204809 120205049 -161988615 + L2 LINE L2 2997 3222 -50 340 369 27 0 chr1 120205596 120205745 -161987919 - MIR3 SINE MIR -29 179 27 1837 145 0 25 chr1 120206294 120206576 -161987088 - AluSx SINE Alu -37 275 1 229 375 47 16 chr1 120206660 120206788 -161986876 + MIR3 SINE MIR 15 146 -62 520 234 37 7 chr1 120207742 120207887 -161985777 + MIR SINE MIR 30 182 -37 2898 3 0 0 chr1 120208180 120208491 -161985173 + AluYa5 SINE Alu 1 311 0 180 237 0 0 chr1 120208816 120208854 -161984810 + MIR SINE MIR 51 88 -174 362 283 20 0 chr1 120210033 120210132 -161983532 - MIR SINE MIR -8 254 154 602 136 122 27 chr1 120210351 120210498 -161983166 + MER65A LTR ERV1 285 445 0 242 276 0 0 chr1 120211186 120211244 -161982420 + GA-rich Low_complexity Low_complexity 1 58 0 5518 113 3 2 chr1 120211661 120212518 -161981146 - L1PA13 LINE L1 0 6163 5306 1869 158 3 3 chr1 120213021 120213313 -161980351 + AluJo SINE Alu 12 303 -9 1974 184 31 29 chr1 120213692 120214250 -161979414 + MLT2A2 LTR ERVL 1 554 0 183 143 0 0 chr1 120214380 120214408 -161979256 + L2 LINE L2 3226 3253 -19 468 229 18 0 chr1 120215229 120215338 -161978326 + MER115 DNA AcHobo 583 693 0 361 249 171 33 chr1 120216969 120217150 -161976514 + MIR SINE MIR 29 234 -28 279 320 40 7 chr1 120217297 120217447 -161976217 - L3b LINE CR1 -316 1267 1113 2204 72 27 10 chr1 120217600 120217892 -161975772 + AluSx SINE Alu 1 297 -15 740 241 48 92 chr1 120217970 120218219 -161975445 - MIR SINE MIR -22 240 3 268 334 29 9 chr1 120218794 120218926 -161974738 - MIR SINE MIR -71 137 2 358 117 0 0 chr1 120219206 120219266 -161974398 - Alu SINE Alu 0 302 243 2001 151 0 19 chr1 120219322 120219640 -161974024 - AluJb SINE Alu 0 312 1 25 31 0 0 chr1 120220705 120220737 -161972927 + AT_rich Low_complexity Low_complexity 1 32 0 186 367 0 17 chr1 120221785 120221845 -161971819 + L2 LINE L2 3154 3212 -60 2210 122 0 3 chr1 120222812 120223123 -161970541 - AluSg SINE Alu 0 310 1 783 219 6 30 chr1 120223465 120223634 -161970030 - FRAM SINE Alu -1 165 1 252 389 15 15 chr1 120223779 120223910 -161969754 + MIR3 SINE MIR 10 140 -68 347 143 110 22 chr1 120223967 120224058 -161969606 + L1MC5 LINE L1 7832 7930 -31 183 241 17 155 chr1 120224067 120224183 -161969481 - MER5A DNA MER1_type -30 159 60 291 313 113 0 chr1 120224209 120224324 -161969340 + MIR SINE MIR 107 234 -28 192 77 0 0 chr1 120225187 120225213 -161968451 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr1 120225935 120225968 -161967696 + AT_rich Low_complexity Low_complexity 1 33 0 4570 135 73 10 chr1 120226595 120227496 -161966168 - L1MA9 LINE L1 -95 6217 5260 234 128 0 0 chr1 120228706 120228745 -161964919 + (CAAAA)n Simple_repeat Simple_repeat 3 41 0 22 35 0 0 chr1 120228808 120228837 -161964827 + AT_rich Low_complexity Low_complexity 1 29 0 674 345 30 0 chr1 120229037 120229272 -161964392 + MIR SINE MIR 2 243 -19 238 250 0 0 chr1 120229634 120229682 -161963982 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 1845 108 8 4 chr1 120230429 120230687 -161962977 - AluSq SINE Alu -20 293 35 2050 98 29 4 chr1 120231238 120231532 -161962132 + AluSx SINE Alu 1 301 0 2373 109 0 0 chr1 120231908 120232221 -161961443 + AluSq SINE Alu 1 313 0 302 358 68 27 chr1 120232362 120232510 -161961154 - L2 LINE L2 0 3272 3119 310 250 213 22 chr1 120232612 120232748 -161960916 + MIR SINE MIR 93 254 -8 2036 98 0 4 chr1 120232969 120233233 -161960431 + AluSx SINE Alu 7 269 -43 1168 112 24 6 chr1 120233388 120233557 -161960107 + AluSc SINE Alu 127 298 -11 263 287 75 11 chr1 120233999 120234093 -161959571 - MER5A DNA MER1_type -80 109 10 400 288 65 36 chr1 120234110 120234156 -161959508 - MIR SINE MIR -72 190 147 2332 72 0 26 chr1 120234156 120234462 -161959202 + AluY SINE Alu 1 298 -13 400 288 65 36 chr1 120234462 120234554 -161959110 - MIR SINE MIR -115 147 48 2289 67 0 0 chr1 120235079 120235386 -161958278 - AluY SINE Alu 0 307 1 245 191 11 45 chr1 120236284 120236373 -161957291 + C-rich Low_complexity Low_complexity 6 91 0 180 0 0 0 chr1 120236666 120236686 -161956978 + (CGG)n Simple_repeat Simple_repeat 3 22 0 206 286 114 0 chr1 120239080 120239150 -161954514 + MIR SINE MIR 183 260 -2 3517 235 106 41 chr1 120240495 120241115 -161952549 - L2 LINE L2 -4 3309 2731 1723 149 11 3 chr1 120241115 120241420 -161952244 - AluSx SINE Alu 0 307 1 3517 235 106 41 chr1 120241420 120242304 -161951360 - L2 LINE L2 -582 2731 1717 204 67 0 0 chr1 120242312 120242342 -161951322 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 1959 133 3 3 chr1 120242342 120242627 -161951037 - AluSx SINE Alu -27 285 1 897 211 108 53 chr1 120242640 120242758 -161950906 - HsTC2 DNA Tc2 -102 1796 1686 1781 68 0 0 chr1 120242758 120242977 -161950687 + L1PA7 LINE L1 5935 6153 -1 897 211 108 53 chr1 120242977 120243181 -161950483 - HsTC2 DNA Tc2 -212 1686 1280 286 260 42 21 chr1 120243684 120243780 -161949884 - L2 LINE L2 -1575 1739 1642 * 330 339 92 36 chr1 120243766 120244123 -161949541 + L2 LINE L2 1880 2256 -1058 1080 264 179 2 chr1 120244509 120244911 -161948753 + L2 LINE L2 813 1285 -2029 572 269 27 68 chr1 120244911 120245130 -161948534 + Charlie1 DNA MER1_type 6 215 -2546 551 209 22 29 chr1 120245132 120245271 -161948393 + Charlie1 DNA MER1_type 2622 2759 -2 778 291 210 11 chr1 120245271 120245618 -161948046 + L2 LINE L2 1280 1695 -1619 191 262 146 10 chr1 120245625 120245728 -161947936 - L2 LINE L2 -775 2539 2423 243 291 219 41 chr1 120245819 120246015 -161947649 + L2 LINE L2 2832 3062 -210 517 249 113 43 chr1 120246361 120246546 -161947118 + MIR SINE MIR 65 262 0 426 215 123 43 chr1 120246580 120246743 -161946921 - MIR SINE MIR -34 228 53 866 105 0 0 chr1 120246955 120247069 -161946595 + AluSg/x SINE Alu 186 299 -13 404 246 77 31 chr1 120247880 120248010 -161945654 + MIR3 SINE MIR 3 138 -70 345 265 205 18 chr1 120248099 120248293 -161945371 + MIR SINE MIR 31 259 -3 335 354 31 31 chr1 120248319 120248480 -161945184 - MIR SINE MIR -77 185 25 267 31 0 0 chr1 120249109 120249141 -161944523 + (TA)n Simple_repeat Simple_repeat 1 32 0 6680 94 14 0 chr1 120249141 120250159 -161943505 - L1PA13 LINE L1 -11 6152 5119 1509 211 14 0 chr1 120252018 120252312 -161941352 + AluJb SINE Alu 15 312 0 2149 120 16 10 chr1 120252741 120253049 -161940615 - AluSx SINE Alu -2 310 1 212 342 54 27 chr1 120253072 120253221 -161940443 - MIR3 SINE MIR -13 195 43 236 308 8 50 chr1 120253678 120253798 -161939866 + L2 LINE L2 3191 3305 -8 456 335 102 19 chr1 120253901 120254116 -161939548 + MIR SINE MIR 2 234 -28 291 369 80 16 chr1 120254532 120254719 -161938945 + MIR SINE MIR 50 248 -14 255 329 24 12 chr1 120254954 120255124 -161938540 - L1ME LINE L1 -375 5746 5575 423 296 78 0 chr1 120255176 120255318 -161938346 + MIR SINE MIR 15 167 -95 386 252 60 40 chr1 120255741 120255757 -161937907 + L2 LINE L2 3160 3174 -139 2397 97 7 0 chr1 120255757 120256066 -161937598 - AluSq SINE Alu 0 313 3 386 252 60 40 chr1 120256066 120256200 -161937464 + L2 LINE L2 3174 3313 0 2090 134 0 3 chr1 120256704 120257010 -161936654 + AluSx SINE Alu 1 305 -7 186 297 68 0 chr1 120257045 120257119 -161936545 - L2 LINE L2 -1 3312 3234 1995 71 4 16 chr1 120257844 120258123 -161935541 - AluSc SINE Alu 0 304 29 365 176 0 0 chr1 120258353 120258427 -161935237 + L1MA6 LINE L1 6227 6300 0 264 339 120 55 chr1 120259222 120259405 -161934259 + MER91A DNA MER1_type 2 196 0 2691 134 42 0 chr1 120260608 120261032 -161932632 - L1MB3 LINE L1 0 6183 5742 393 167 56 0 chr1 120261941 120262013 -161931651 - Tigger5 DNA MER2_type -1 2322 2247 1462 205 54 4 chr1 120262020 120262298 -161931366 - Tigger5 DNA MER2_type -2031 292 1 1943 138 30 70 chr1 120262448 120262818 -161930846 - MER57A LTR ERV1 -5 398 44 28 29 0 0 chr1 120263861 120263896 -161929768 + AT_rich Low_complexity Low_complexity 1 35 0 195 307 79 86 chr1 120264045 120264185 -161929479 - L2 LINE L2 -2 3270 3132 21 36 0 0 chr1 120265271 120265299 -161928365 + AT_rich Low_complexity Low_complexity 1 28 0 1602 164 4 11 chr1 120267776 120268050 -161925614 - AluJo SINE Alu -11 301 30 2292 214 36 30 chr1 120268582 120269082 -161924582 - MLT1D LTR MaLR 0 505 3 304 278 10 41 chr1 120269854 120269951 -161923713 + MIR3 SINE MIR 64 157 -51 861 285 70 45 chr1 120270058 120270182 -161923482 - L1MC5 LINE L1 -48 7913 7794 546 125 0 0 chr1 120270182 120270270 -161923394 - L1MA5 LINE L1 0 6300 6213 861 285 70 45 chr1 120270270 120270890 -161922774 - L1MC5 LINE L1 -167 7794 7261 478 285 36 25 chr1 120270887 120271130 -161922534 - L1MC4 LINE L1 -742 7219 7010 * 2874 124 59 15 chr1 120271218 120271282 -161922382 - L1M1 LINE L1 -4155 3410 3350 3910 88 45 9 chr1 120271282 120271841 -161921823 - L1MA3 LINE L1 -1 6304 5726 2874 124 59 15 chr1 120271841 120272302 -161921362 - L1M1 LINE L1 -4215 3350 2862 1382 82 0 0 chr1 120272302 120272472 -161921192 - AluY SINE Alu -10 301 132 17107 147 36 3 chr1 120272472 120275235 -161918429 - L1M1 LINE L1 -4696 2869 16 313 167 0 0 chr1 120275239 120275293 -161918371 - L1MC4 LINE L1 -1031 7011 6958 2138 109 13 10 chr1 120275298 120275609 -161918055 - AluSx SINE Alu 0 312 1 220 157 36 24 chr1 120275675 120275758 -161917906 + (TA)n Simple_repeat Simple_repeat 1 84 0 2569 167 35 23 chr1 120275758 120276243 -161917421 - L1MB3 LINE L1 -10 6173 5683 971 223 187 45 chr1 120276288 120276715 -161916949 - L1ME3A LINE L1 -51 6119 5632 2017 168 16 40 chr1 120277563 120277774 -161915890 - MLT1A1 LTR MaLR 0 365 165 2177 129 46 38 chr1 120277774 120278146 -161915518 + THE1C LTR MaLR 1 375 0 2017 168 16 40 chr1 120278146 120278308 -161915356 - MLT1A1 LTR MaLR -200 165 1 782 244 23 94 chr1 120278382 120278631 -161915033 + L1ME1 LINE L1 5878 6104 -62 2788 19 0 0 chr1 120278631 120278939 -161914725 - AluY SINE Alu -3 308 1 782 244 23 94 chr1 120278939 120278988 -161914676 + L1ME1 LINE L1 6104 6155 -11 23 0 0 0 chr1 120279876 120279899 -161913765 + AT_rich Low_complexity Low_complexity 1 23 0 274 328 107 15 chr1 120280481 120280612 -161913052 - L2 LINE L2 -559 2755 2613 21 57 0 0 chr1 120280626 120280661 -161913003 + AT_rich Low_complexity Low_complexity 1 35 0 281 319 11 0 chr1 120282038 120282132 -161911532 + MIR3 SINE MIR 83 177 -31 22 0 0 0 chr1 120282502 120282524 -161911140 + AT_rich Low_complexity Low_complexity 1 22 0 2331 100 0 3 chr1 120282603 120282904 -161910760 + AluSq SINE Alu 1 300 -13 197 119 24 0 chr1 120282904 120282946 -161910718 + (TA)n Simple_repeat Simple_repeat 2 44 0 1051 193 67 14 chr1 120283682 120283905 -161909759 + MER46A DNA MER2_type 1 235 -1 314 282 134 20 chr1 120284175 120284324 -161909340 + MIR SINE MIR 94 259 -3 189 233 75 117 chr1 120284814 120284934 -161908730 - L2 LINE L2 0 3272 3158 454 319 8 113 chr1 120285575 120285832 -161907832 + L2 LINE L2 3039 3268 -4 413 254 45 0 chr1 120285837 120285947 -161907717 - L2 LINE L2 0 3272 3158 379 219 125 0 chr1 120286020 120286116 -161907548 - MIR SINE MIR -74 188 81 260 332 134 27 chr1 120287040 120287227 -161906437 - MIR SINE MIR -32 230 24 1953 95 4 0 chr1 120287548 120287800 -161905864 + AluSx SINE Alu 34 286 -26 24 53 0 0 chr1 120288416 120288454 -161905210 + AT_rich Low_complexity Low_complexity 1 38 0 211 120 20 40 chr1 120289519 120289569 -161904095 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 1935 162 0 19 chr1 120290598 120290912 -161902752 - AluSx SINE Alu -4 308 1 743 262 39 13 chr1 120291372 120291605 -161902059 + MIR SINE MIR 8 246 -16 441 0 0 0 chr1 120292735 120292784 -161900880 + (TG)n Simple_repeat Simple_repeat 2 50 0 1026 160 24 34 chr1 120293712 120293918 -161899746 - MSTD LTR MaLR 0 396 193 1015 216 20 0 chr1 120293956 120294160 -161899504 - MSTD LTR MaLR -188 208 1 293 266 109 31 chr1 120294246 120294438 -161899226 - L1ME LINE L1 -295 5826 5620 217 320 13 0 chr1 120294755 120294833 -161898831 + CT-rich Low_complexity Low_complexity 4 82 0 2392 62 0 7 chr1 120294883 120295222 -161898442 - AluY SINE Alu 0 337 1 288 0 0 0 chr1 120295327 120295359 -161898305 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 198 339 0 0 chr1 120296098 120296157 -161897507 - L2 LINE L2 -9 3263 3205 796 263 104 88 chr1 120296521 120296955 -161896709 + L2 LINE L2 2872 3312 -1 249 316 208 6 chr1 120297578 120297891 -161895773 - L2 LINE L2 -644 2670 2295 22 0 0 0 chr1 120298425 120298447 -161895217 + AT_rich Low_complexity Low_complexity 1 22 0 2160 214 36 51 chr1 120299436 120299531 -161894133 - MER119 DNA MER1_type 0 583 488 2326 109 0 0 chr1 120299531 120299844 -161893820 - AluSq SINE Alu 0 313 1 2160 214 36 51 chr1 120299844 120300338 -161893326 - MER119 DNA MER1_type -95 488 3 378 332 23 59 chr1 120301756 120301976 -161891688 + MIR SINE MIR 20 231 -31 180 397 64 0 chr1 120302572 120302650 -161891014 + L2 LINE L2 3136 3218 -54 239 234 13 13 chr1 120303333 120303410 -161890254 - HAL1b LINE L1 -81 1267 1191 21 0 0 0 chr1 120303491 120303512 -161890152 + AT_rich Low_complexity Low_complexity 1 21 0 663 237 220 0 chr1 120306013 120306199 -161887465 + MIR SINE MIR 30 256 -6 2281 113 48 17 chr1 120307842 120308195 -161885469 + THE1B LTR MaLR 1 364 0 22 56 0 0 chr1 120308358 120308394 -161885270 + AT_rich Low_complexity Low_complexity 1 36 0 285 299 15 95 chr1 120309170 120309307 -161884357 + L2 LINE L2 3142 3267 -5 238 340 153 10 chr1 120309537 120309740 -161883924 - MIR SINE MIR -3 259 28 2430 83 0 0 chr1 120309741 120310043 -161883621 - AluSx SINE Alu -6 306 5 232 329 47 0 chr1 120310076 120310161 -161883503 - MIR SINE MIR -102 106 18 280 276 39 47 chr1 120310408 120310535 -161883129 + MER94 DNA DNA 3 128 -6 237 91 0 0 chr1 120311382 120311415 -161882249 + tRNA-Gln-CAG tRNA tRNA 5 37 -38 27 0 0 0 chr1 120311503 120311530 -161882134 + AT_rich Low_complexity Low_complexity 1 27 0 394 271 39 8 chr1 120312071 120312200 -161881464 - MER94 DNA DNA 0 134 2 342 0 0 0 chr1 120312433 120312471 -161881193 + (CA)n Simple_repeat Simple_repeat 2 39 0 204 307 53 0 chr1 120312482 120312557 -161881107 + MIR SINE MIR 28 106 -156 193 250 111 28 chr1 120312595 120312667 -161880997 + MIR SINE MIR 70 147 -115 2145 121 0 0 chr1 120312845 120313150 -161880514 + AluSq SINE Alu 1 305 -8 20290 93 16 12 chr1 120314862 120318192 -161875472 - L1P3 LINE L1 -352 5820 2475 7877 73 4 2 chr1 120318192 120319159 -161874505 + LTR5 LTR ERVK 1 969 0 20290 93 16 12 chr1 120319159 120319510 -161874154 - L1P3 LINE L1 -3697 2475 2127 11209 66 1 5 chr1 120319610 120321122 -161872542 - L1P3 LINE L1 -4638 1508 3 3584 134 66 16 chr1 120321142 120321914 -161871750 - MER11B LTR ERVK -326 910 5 182 451 52 7 chr1 120322039 120322192 -161871472 - L2 LINE L2 -40 3232 3073 239 287 40 30 chr1 120322594 120322695 -161870969 - HAL1 LINE L1 -1878 629 528 264 107 36 36 chr1 120322834 120322890 -161870774 - HAL1 LINE L1 -2310 197 142 274 171 34 114 chr1 120322928 120322980 -161870684 + MER94 DNA DNA 3 47 -87 2267 89 0 7 chr1 120322980 120323284 -161870380 + AluSx SINE Alu 1 302 -10 274 171 34 114 chr1 120323284 120323319 -161870345 + MER94 DNA DNA 47 83 -51 683 282 69 19 chr1 120323455 120323831 -161869833 - HAL1 LINE L1 -855 1652 1258 271 30 0 0 chr1 120323881 120323914 -161869750 - MLT2B1 LTR ERVL 0 520 488 1124 188 0 47 chr1 120323925 120324138 -161869526 - AluJo SINE Alu -109 203 1 326 233 81 41 chr1 120324143 120324315 -161869349 - HAL1 LINE L1 -1317 1190 1012 2335 214 4 33 chr1 120324545 120324839 -161868825 - MLT2B3 LTR ERVL -54 500 226 267 31 0 0 chr1 120324839 120324871 -161868793 + (CAGAGA)n Simple_repeat Simple_repeat 4 35 0 2335 214 4 33 chr1 120324871 120325091 -161868573 - MLT2B3 LTR ERVL -328 226 1 1748 176 0 33 chr1 120325115 120325416 -161868248 - AluJb SINE Alu -21 291 1 326 233 81 41 chr1 120325421 120325593 -161868071 - HAL1 LINE L1 -1317 1190 1012 1504 170 11 22 chr1 120326290 120326561 -161867103 + AluSx SINE Alu 21 288 -24 288 0 0 0 chr1 120326813 120326845 -161866819 + (TG)n Simple_repeat Simple_repeat 2 33 0 2440 155 31 19 chr1 120326877 120327142 -161866522 + L1MA9 LINE L1 5787 6062 -250 1116 213 125 94 chr1 120327142 120327191 -161866473 + LTR36 LTR ERV1 1 47 -564 186 43 0 0 chr1 120327191 120327214 -161866450 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1116 213 125 94 chr1 120327214 120327757 -161865907 + LTR36 LTR ERV1 47 611 0 2440 155 31 19 chr1 120327757 120327976 -161865688 + L1MA9 LINE L1 6062 6277 -35 1242 234 56 38 chr1 120328123 120328556 -161865108 - L1 LINE L1 -1439 4707 4262 360 0 0 0 chr1 120328556 120328596 -161865068 + (TG)n Simple_repeat Simple_repeat 1 40 0 1242 234 56 38 chr1 120328596 120328683 -161864981 - L1 LINE L1 -1884 4262 4178 557 263 26 30 chr1 120328685 120328951 -161864713 - L1MCa LINE L1 -4755 1671 1407 378 0 0 0 chr1 120328952 120328994 -161864670 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2204 85 112 6 chr1 120328997 120329362 -161864302 - LTR7 LTR ERV1 -46 404 1 2200 103 48 13 chr1 120329362 120329739 -161863925 - HERVH LTR ERV1 0 7713 7324 1356 116 19 0 chr1 120329739 120329955 -161863709 - HERVH LTR ERV1 -1894 5819 5600 2761 179 42 38 chr1 120329956 120330615 -161863049 - HERVH LTR ERV1 -2564 5149 4488 3263 105 2 6 chr1 120330617 120331121 -161862543 - HERVH LTR ERV1 -3720 3993 3492 765 169 20 0 chr1 120331111 120331259 -161862405 - HERVH LTR ERV1 -4423 3290 3140 * 18863 103 21 7 chr1 120331253 120334198 -161859466 - HERVH LTR ERV1 -4726 2987 1 724 67 0 19 chr1 120334200 120334305 -161859359 - LTR7 LTR ERV1 -2 448 346 246 282 189 34 chr1 120334320 120334824 -161858840 - L1MEc LINE L1 -5023 1373 792 21 0 0 0 chr1 120335437 120335458 -161858206 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr1 120335567 120335597 -161858067 + (CA)n Simple_repeat Simple_repeat 1 30 0 439 296 64 56 chr1 120335887 120336420 -161857244 + L1MC4 LINE L1 7098 7634 -408 356 318 17 40 chr1 120336430 120336603 -161857061 - L1MC4 LINE L1 -414 7628 7460 261 345 40 14 chr1 120337448 120337596 -161856068 - MIR3 SINE MIR -7 201 50 31 0 0 0 chr1 120337751 120337782 -161855882 + AT_rich Low_complexity Low_complexity 1 31 0 528 291 12 17 chr1 120338636 120338808 -161854856 + MER5B DNA MER1_type 7 177 -1 255 297 34 68 chr1 120341883 120342031 -161851633 - MIR SINE MIR -98 164 22 633 305 14 26 chr1 120343199 120343552 -161850112 + L1ME LINE L1 5254 5603 -561 624 213 217 41 chr1 120343945 120344166 -161849498 - MIR SINE MIR -2 260 1 1832 167 41 8 chr1 120345013 120345402 -161848262 - L1MC3 LINE L1 -13 7772 7371 196 156 0 0 chr1 120345482 120345514 -161848150 + L2 LINE L2 3282 3313 0 265 330 47 26 chr1 120345859 120346092 -161847572 + L1MEc LINE L1 204 441 -6122 2351 93 0 17 chr1 120346411 120346713 -161846951 - AluSq SINE Alu -16 297 1 417 164 10 10 chr1 120346732 120346842 -161846822 + L1MEc LINE L1 1574 1788 -4594 262 342 79 0 chr1 120346929 120347043 -161846621 + L2 LINE L2 3187 3309 -4 332 321 16 16 chr1 120347270 120347454 -161846210 - L1M4 LINE L1 -3327 2819 2636 2833 277 47 33 chr1 120347516 120348606 -161845058 + L1M3b LINE L1 566 1374 -4976 2436 85 3 3 chr1 120348606 120348912 -161844752 + AluY SINE Alu 1 306 -5 2833 277 47 33 chr1 120348912 120349959 -161843705 + L1M3b LINE L1 1374 2405 -3945 2841 3 0 0 chr1 120350027 120350334 -161843330 - AluYa5 SINE Alu -4 307 1 2690 237 32 8 chr1 120350376 120351207 -161842457 + L1M3b LINE L1 2511 3361 -2989 1776 119 4 0 chr1 120351207 120351451 -161842213 + AluSx SINE Alu 1 245 -67 10145 225 33 25 chr1 120351474 120354719 -161838945 + L1M4 LINE L1 2133 5403 -743 23 0 0 0 chr1 120354860 120354883 -161838781 + AT_rich Low_complexity Low_complexity 1 23 0 2462 65 0 10 chr1 120355280 120355590 -161838074 - AluSx SINE Alu -5 307 1 26 30 0 0 chr1 120356728 120356761 -161836903 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr1 120357602 120357642 -161836022 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr1 120358265 120358289 -161835375 + AT_rich Low_complexity Low_complexity 1 24 0 2379 82 3 0 chr1 120358704 120358997 -161834667 - AluSp SINE Alu -19 294 1 26 0 0 0 chr1 120359275 120359301 -161834363 + AT_rich Low_complexity Low_complexity 1 26 0 634 323 101 58 chr1 120359548 120360350 -161833314 + L2 LINE L2 2376 3231 -41 460 236 50 75 chr1 120360807 120361048 -161832616 - L1MC4 LINE L1 -40 8002 7768 515 195 0 0 chr1 120361065 120361147 -161832517 + FLAM_A SINE Alu 35 116 -26 279 79 0 0 chr1 120361151 120361189 -161832475 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 331 272 105 0 chr1 120361391 120361505 -161832159 - L1MC5 LINE L1 -520 7441 7316 655 255 90 15 chr1 120361788 120362055 -161831609 + L1M4 LINE L1 2373 2659 -3487 855 257 46 15 chr1 120362079 120362376 -161831288 + L1M4 LINE L1 2757 3070 -3076 1123 185 62 0 chr1 120362376 120362587 -161831077 - MER58A DNA MER1_type 0 224 1 855 257 46 15 chr1 120362587 120362678 -161830986 + L1M4 LINE L1 3070 3157 -2989 936 174 145 0 chr1 120362680 120362852 -161830812 + AluSx SINE Alu 1 197 -115 11304 182 18 46 chr1 120362852 120363045 -161830619 - L1P3 LINE L1 -2843 3618 3421 7523 31 0 0 chr1 120363045 120364060 -161829604 - L1PA3 LINE L1 0 6155 5142 11304 182 18 46 chr1 120364060 120367555 -161826109 - L1P3 LINE L1 -3040 3421 10 183 376 68 8 chr1 120367709 120367842 -161825822 - MIR3 SINE MIR -34 174 34 648 165 24 0 chr1 120368215 120368342 -161825322 - FLAM_C SINE Alu -3 130 1 650 217 0 0 chr1 120369396 120369511 -161824153 - FLAM_C SINE Alu -18 115 1 1335 239 71 58 chr1 120370620 120371067 -161822597 + L1M4 LINE L1 4295 4735 -1411 1857 134 69 4 chr1 120371067 120371344 -161822320 + AluSx SINE Alu 16 310 -2 1335 239 71 58 chr1 120371344 120371574 -161822090 + L1M4 LINE L1 4735 4984 -1162 1643 149 41 9 chr1 120371574 120371889 -161821775 + L1MA4 LINE L1 5970 6294 -6 1335 239 71 58 chr1 120371889 120371914 -161821750 + L1M4 LINE L1 4984 5007 -1139 902 209 24 8 chr1 120371911 120372165 -161821499 + L1 LINE L1 2752 3009 -3137 * 1890 143 0 7 chr1 120372184 120372464 -161821200 + AluSx SINE Alu 1 278 -34 239 77 0 26 chr1 120372464 120372503 -161821161 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 11582 127 8 13 chr1 120372627 120372650 -161821014 - L1P3 LINE L1 -3651 2810 2788 7977 70 3 2 chr1 120372650 120373618 -161820046 + LTR5 LTR ERVK 1 969 0 11582 127 8 13 chr1 120373618 120376401 -161817263 - L1P3 LINE L1 -3673 2788 8 855 161 86 0 chr1 120376412 120376586 -161817078 - MLT1C LTR MaLR -273 194 6 32 43 0 0 chr1 120376725 120376771 -161816893 + AT_rich Low_complexity Low_complexity 1 46 0 478 89 0 70 chr1 120377823 120377829 -161815835 + (TA)n Simple_repeat Simple_repeat 1 6 -140 1752 165 50 3 chr1 120377829 120378193 -161815471 - L1PB4 LINE L1 0 6156 5776 478 89 0 70 chr1 120378193 120378343 -161815321 + (TA)n Simple_repeat Simple_repeat 6 146 0 480 119 2 90 chr1 120378408 120378926 -161814738 + (TA)n Simple_repeat Simple_repeat 1 472 0 2778 165 40 29 chr1 120378926 120379497 -161814167 - L1PB4 LINE L1 -355 5801 5238 2410 128 5 8 chr1 120379497 120379873 -161813791 - THE1C LTR MaLR 0 375 1 2778 165 40 29 chr1 120379873 120380469 -161813195 - L1PB4 LINE L1 -918 5238 4634 228 204 0 0 chr1 120380506 120380550 -161813114 + Alu SINE Alu 86 129 -4 342 0 0 0 chr1 120381080 120381118 -161812546 + (A)n Simple_repeat Simple_repeat 1 38 0 398 254 102 5 chr1 120381393 120381552 -161812112 + MLT1J1 LTR MaLR 63 235 -215 361 269 82 90 chr1 120381858 120382312 -161811352 + HAL1 LINE L1 817 1266 -1241 1073 138 71 0 chr1 120382547 120382743 -161810921 - L1MB1 LINE L1 -2 6166 5957 1190 127 15 0 chr1 120382757 120382954 -161810710 - L1MB1 LINE L1 -278 5890 5691 1214 160 0 5 chr1 120383062 120383250 -161810414 - AluJo SINE Alu -125 187 1 672 328 92 3 chr1 120383254 120383614 -161810050 + HAL1 LINE L1 1507 1898 -609 2003 157 0 0 chr1 120384134 120384428 -161809236 + AluJb SINE Alu 1 294 -18 1546 249 69 39 chr1 120384510 120385269 -161808395 + L2 LINE L2 2528 3295 -18 1850 171 3 0 chr1 120385571 120385857 -161807807 + AluJb SINE Alu 1 287 -25 1819 157 13 17 chr1 120387529 120387829 -161805835 + AluJo SINE Alu 1 299 -13 312 324 84 24 chr1 120387891 120388104 -161805560 + L2 LINE L2 2396 2621 -693 811 219 57 5 chr1 120388122 120388314 -161805350 - MIR SINE MIR 0 262 61 266 272 37 0 chr1 120388320 120388401 -161805263 + L2 LINE L2 2624 2707 -607 1992 33 12 8 chr1 120388903 120389145 -161804519 - AluY SINE Alu -2 309 67 488 321 167 12 chr1 120389925 120390252 -161803412 + L2 LINE L2 2767 3139 -174 10110 32 9 131 chr1 120390286 120391802 -161801862 - SVA Other Other 0 1386 57 525 16 0 0 chr1 120391802 120391864 -161801800 + (GGGAGA)n Simple_repeat Simple_repeat 1 62 0 28360 27 1 0 chr1 120391864 120395667 -161797997 + L1P1 LINE L1 1832 5635 -520 13879 27 2 2 chr1 120395768 120398192 -161795472 + L1PA3 LINE L1 3724 6152 -3 207 20 0 118 chr1 120398195 120398246 -161795418 + (TAAAAA)n Simple_repeat Simple_repeat 2 46 0 1199 96 0 16 chr1 120398252 120398439 -161795225 + MER11A LTR ERVK 1083 1266 0 23 0 0 0 chr1 120398639 120398662 -161795002 + AT_rich Low_complexity Low_complexity 1 23 0 6250 92 8 19 chr1 120398831 120400381 -161793283 + L1PA10 LINE L1 4631 6164 -4 2107 150 3 0 chr1 120400392 120400698 -161792966 + AluSx SINE Alu 1 307 -5 300 51 0 0 chr1 120400698 120400737 -161792927 - MADE1 DNA Mariner -41 39 1 564 296 126 9 chr1 120400945 120401168 -161792496 + MIR SINE MIR 11 259 -3 832 223 121 0 chr1 120401280 120401495 -161792169 - MIR SINE MIR 0 262 22 386 284 28 0 chr1 120402396 120402505 -161791159 - MIR SINE MIR 0 262 151 * 639 306 73 5 chr1 120402497 120402716 -161790948 - MIR SINE MIR -26 236 3 1991 120 34 14 chr1 120402745 120403036 -161790628 + AluSx SINE Alu 4 300 -12 410 156 65 0 chr1 120403038 120403115 -161790549 + MIR SINE MIR 94 175 -87 2164 104 3 19 chr1 120403219 120403528 -161790136 - AluSq SINE Alu -9 304 1 202 341 141 18 chr1 120404209 120404379 -161789285 + MIR SINE MIR 26 216 -46 652 223 8 0 chr1 120404663 120404784 -161788880 - FLAM_A SINE Alu -11 122 1 2855 66 0 0 chr1 120404816 120405181 -161788483 + L1PA8 LINE L1 5800 6164 -8 2207 80 4 0 chr1 120406739 120407046 -161786618 - AluY SINE Alu 0 316 9 3579 246 99 28 chr1 120407046 120408321 -161785343 + L2 LINE L2 1712 3116 -197 360 0 0 0 chr1 120408321 120408361 -161785303 + (CA)n Simple_repeat Simple_repeat 2 41 0 3579 246 99 28 chr1 120408361 120408575 -161785089 + L2 LINE L2 3116 3313 0 23 0 0 0 chr1 120408764 120408787 -161784877 + AT_rich Low_complexity Low_complexity 1 23 0 1139 258 85 49 chr1 120409032 120410408 -161783256 + L1ME3 LINE L1 4492 5923 -239 279 0 0 0 chr1 120410907 120410938 -161782726 + (CA)n Simple_repeat Simple_repeat 2 32 0 220 273 78 13 chr1 120410939 120411016 -161782648 + L2 LINE L2 3151 3232 -40 569 200 93 7 chr1 120411120 120411270 -161782394 + MIR SINE MIR 85 247 -15 33 25 0 0 chr1 120411342 120411382 -161782282 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr1 120413955 120413976 -161779688 + AT_rich Low_complexity Low_complexity 1 21 0 301 242 79 6 chr1 120414037 120414215 -161779449 + L1M4 LINE L1 5152 5342 -804 558 309 94 9 chr1 120414216 120414449 -161779215 + L2 LINE L2 931 1183 -2131 265 267 116 20 chr1 120414959 120415105 -161778559 + MLT1J LTR MaLR 332 491 -20 212 309 211 0 chr1 120415397 120415520 -161778144 - L2 LINE L2 -5 3308 3160 299 347 78 60 chr1 120416703 120416971 -161776693 + L2 LINE L2 3000 3272 0 2215 110 0 0 chr1 120417076 120417367 -161776297 - AluSg SINE Alu -18 292 2 2308 84 3 17 chr1 120417394 120417693 -161775971 - AluSq SINE Alu -18 295 1 440 312 87 42 chr1 120417806 120417952 -161775712 + L1ME LINE L1 5265 5403 -718 2505 75 0 7 chr1 120417952 120418260 -161775404 + AluY SINE Alu 1 306 -5 440 312 87 42 chr1 120418260 120418424 -161775240 + L1ME LINE L1 5403 5589 -532 657 221 86 0 chr1 120418523 120418686 -161774978 - MER58A DNA MER1_type 0 224 48 17338 101 12 8 chr1 120419061 120419738 -161773926 + L1P LINE L1 1802 2475 -3671 7977 70 3 2 chr1 120419738 120420706 -161772958 - LTR5 LTR ERVK 0 969 1 17338 101 12 8 chr1 120420706 120422771 -161770893 + L1P LINE L1 2475 4556 -1590 203 189 19 0 chr1 120423393 120423446 -161770218 + GA-rich Low_complexity Low_complexity 2 55 0 997 278 88 34 chr1 120423475 120423860 -161769804 + MLT1J2 LTR MaLR 1 406 -44 547 125 18 27 chr1 120423863 120423975 -161769689 + L1MC5 LINE L1 7117 7227 -734 5277 149 47 7 chr1 120424056 120425571 -161768093 - L1PA16 LINE L1 -2 6164 4589 766 279 28 4 chr1 120425576 120425827 -161767837 + L2 LINE L2 2153 2409 -905 1210 293 129 14 chr1 120425887 120426460 -161767204 + L2 LINE L2 2671 3313 0 8504 58 5 4 chr1 120426475 120427545 -161766119 + MER11C LTR ERVK 1 1071 0 662 236 35 64 chr1 120427632 120427835 -161765829 + MIR SINE MIR 66 262 0 25525 69 1 5 chr1 120428856 120434536 -161759128 + L1PA6 LINE L1 505 6151 -3 260 375 29 49 chr1 120435446 120435753 -161757911 + L2 LINE L2 2448 2748 -566 225 274 13 92 chr1 120435892 120436045 -161757619 + L2 LINE L2 2942 3082 -190 196 139 0 28 chr1 120436840 120436876 -161756788 + L2 LINE L2 3271 3305 -8 746 167 0 8 chr1 120436899 120437019 -161756645 + FLAM_C SINE Alu 1 119 -14 207 0 0 0 chr1 120437027 120437050 -161756614 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 326 189 9 0 chr1 120437092 120437203 -161756461 + (TA)n Simple_repeat Simple_repeat 2 113 0 24 53 0 0 chr1 120437225 120437263 -161756401 + AT_rich Low_complexity Low_complexity 1 38 0 318 262 58 19 chr1 120437263 120437366 -161756298 + L1MC4 LINE L1 6613 6719 -1323 316 237 11 43 chr1 120437365 120437458 -161756206 - L1MC4 LINE L1 -1337 6705 6616 * 28 0 0 0 chr1 120437458 120437486 -161756178 + AT_rich Low_complexity Low_complexity 1 28 0 278 208 0 25 chr1 120437505 120437625 -161756039 + (TA)n Simple_repeat Simple_repeat 1 117 0 195 255 0 0 chr1 120437626 120437673 -161755991 - MIR3 SINE MIR -6 202 156 247 226 151 57 chr1 120437769 120437875 -161755789 + L2 LINE L2 3157 3272 0 1088 151 68 0 chr1 120437895 120438087 -161755577 - MER3 DNA MER1_type -4 205 1 257 330 92 0 chr1 120438087 120438196 -161755468 - MIR3 SINE MIR -48 160 42 36 62 0 0 chr1 120439936 120440000 -161753664 + AT_rich Low_complexity Low_complexity 1 64 0 238 204 0 20 chr1 120440047 120440096 -161753568 - L2 LINE L2 -1 3271 3224 303 191 0 0 chr1 120440104 120440167 -161753497 - MLT1J2 LTR MaLR -13 437 375 1306 112 174 4 chr1 120440167 120440425 -161753239 + L1MB3 LINE L1 5875 6176 -7 1011 221 116 0 chr1 120440521 120440788 -161752876 - MLT1J1 LTR MaLR -148 298 1 1036 189 10 10 chr1 120440980 120441176 -161752488 + MER20 DNA MER1_type 1 196 -23 1278 138 54 0 chr1 120442058 120442297 -161751367 - LTR48 LTR ERV1 -13 774 523 253 287 85 47 chr1 120442397 120442526 -161751138 - L2 LINE L2 0 3313 3180 768 268 116 29 chr1 120442831 120443245 -161750419 - MLT1J2 LTR MaLR 0 450 1 695 260 17 6 chr1 120443436 120443609 -161750055 + LTR33 LTR ERVL 25 199 -322 320 206 52 10 chr1 120443641 120443738 -161749926 + LTR33 LTR ERVL 415 515 -6 365 319 94 87 chr1 120443877 120444303 -161749361 + L2 LINE L2 2828 3256 -16 226 205 0 0 chr1 120444269 120444308 -161749356 + MIR SINE MIR 219 257 -5 * 23 0 0 0 chr1 120444403 120444426 -161749238 + AT_rich Low_complexity Low_complexity 1 23 0 234 309 40 32 chr1 120444519 120444645 -161749019 + L2 LINE L2 1878 2004 -1310 233 57 29 0 chr1 120444651 120444686 -161748978 + (TC)n Simple_repeat Simple_repeat 2 37 0 191 88 29 0 chr1 120444686 120444720 -161748944 + (CA)n Simple_repeat Simple_repeat 1 35 0 300 282 35 24 chr1 120444775 120444860 -161748804 + L2 LINE L2 3186 3271 -1 22 0 0 0 chr1 120445311 120445333 -161748331 + AT_rich Low_complexity Low_complexity 1 22 0 203 270 0 0 chr1 120445476 120445513 -161748151 + L2 LINE L2 3139 3175 -97 843 164 0 0 chr1 120445799 120445939 -161747725 - AluY SINE Alu -15 296 157 369 285 121 80 chr1 120446478 120446843 -161746821 + L1M2 LINE L1 527 906 -5943 595 260 146 5 chr1 120448534 120448726 -161744938 - MIR SINE MIR -12 250 32 273 338 149 15 chr1 120449033 120449234 -161744430 + MIR SINE MIR 17 244 -18 1305 128 118 48 chr1 120449558 120449847 -161743817 + MER68 LTR ERV1 6 314 -248 702 169 25 0 chr1 120449873 120449991 -161743673 + MER68 LTR ERV1 436 556 -6 203 214 0 29 chr1 120450062 120450132 -161743532 + (TA)n Simple_repeat Simple_repeat 2 69 0 296 328 46 23 chr1 120450742 120450873 -161742791 - L2 LINE L2 -632 2682 2549 1982 138 0 19 chr1 120451160 120451471 -161742193 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr1 120451558 120451587 -161742077 + AT_rich Low_complexity Low_complexity 1 29 0 918 172 0 0 chr1 120451702 120451853 -161741811 - Tigger3(Golem) DNA MER2_type -1 3028 2878 299 220 17 0 chr1 120451854 120451913 -161741751 - Tigger3(Golem) DNA MER2_type -2969 60 1 803 266 60 53 chr1 120452343 120452892 -161740772 - L1ME4a LINE L1 -4 6117 5565 3198 136 81 12 chr1 120453006 120453648 -161740016 + L1MA9 LINE L1 5620 6305 -7 34 0 0 0 chr1 120453651 120453685 -161739979 + AT_rich Low_complexity Low_complexity 1 34 0 562 187 128 172 chr1 120453742 120454015 -161739649 - MIR SINE MIR 0 262 2 1810 187 0 3 chr1 120454229 120454528 -161739136 + AluJo SINE Alu 14 311 -1 528 217 165 18 chr1 120455095 120455334 -161738330 - MLT1J LTR MaLR -16 467 227 262 214 56 22 chr1 120455334 120455423 -161738241 - MLT1J2 LTR MaLR -306 144 53 195 311 108 0 chr1 120455498 120455572 -161738092 - MIR SINE MIR -60 148 67 * 484 231 138 115 chr1 120455569 120455831 -161737833 + L3 LINE CR1 1254 1526 -51 1596 158 31 34 chr1 120455831 120456123 -161737541 - AluJo SINE Alu -21 291 1 484 231 138 115 chr1 120456123 120456172 -161737492 + L3 LINE CR1 1526 1572 -5 287 341 181 42 chr1 120456855 120458106 -161735558 - L2 LINE L2 -1783 1531 108 271 355 90 10 chr1 120458412 120458711 -161734953 + L2 LINE L2 1715 2037 -1277 3313 162 77 8 chr1 120458766 120459100 -161734564 - L1MC1 LINE L1 -17 6316 6007 1458 79 0 16 chr1 120459100 120459322 -161734342 - AluSg/x SINE Alu 0 316 98 3313 162 77 8 chr1 120459322 120459651 -161734013 - L1MC1 LINE L1 -326 6007 5605 218 333 83 0 chr1 120459693 120459789 -161733875 - MIR SINE MIR -95 167 64 4266 125 75 34 chr1 120460074 120460969 -161732695 + L1MB2 LINE L1 5187 6124 -47 2228 100 3 0 chr1 120460969 120461259 -161732405 + AluSq SINE Alu 1 291 -22 4266 125 75 34 chr1 120461259 120461302 -161732362 + L1MB2 LINE L1 6124 6164 -7 278 180 82 0 chr1 120461577 120461638 -161732026 - L1M4 LINE L1 -556 5622 5557 324 301 29 39 chr1 120461772 120461875 -161731789 + L2 LINE L2 2985 3086 -186 2730 150 27 46 chr1 120461905 120462491 -161731173 + L1MB8 LINE L1 5594 6168 -10 629 178 9 0 chr1 120462539 120462646 -161731018 - FLAM_A SINE Alu -34 108 1 226 191 21 0 chr1 120462753 120462800 -161730864 + Tigger1 DNA MER2_type 6 53 -2365 13352 25 0 1 chr1 120462801 120465141 -161728523 - L1PA2 LINE L1 -5 6150 3812 8120 29 0 0 chr1 120465141 120466159 -161727505 + L1P LINE L1 1689 2706 -3440 14375 118 31 7 chr1 120466159 120466221 -161727443 + Tigger1 DNA MER2_type 49 108 -2310 1365 209 60 3 chr1 120466221 120466239 -161727425 - AluJo SINE Alu -13 299 283 315 0 0 0 chr1 120466239 120466274 -161727390 + (TG)n Simple_repeat Simple_repeat 1 35 0 231 36 0 0 chr1 120466273 120466301 -161727363 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1365 209 60 3 chr1 120466274 120466565 -161727099 - AluJo SINE Alu -29 283 1 14375 118 31 7 chr1 120466565 120468818 -161724846 + Tigger1 DNA MER2_type 108 2418 0 501 280 157 55 chr1 120469494 120469654 -161724010 - L1ME4a LINE L1 -28 6093 5951 1689 170 59 7 chr1 120469654 120469942 -161723722 - AluJb SINE Alu -9 303 1 501 280 157 55 chr1 120469942 120470145 -161723519 - L1ME4a LINE L1 -170 5951 5693 322 349 79 26 chr1 120470393 120470771 -161722893 - L2 LINE L2 -1281 2033 1636 252 0 0 0 chr1 120472815 120472843 -161720821 + (TG)n Simple_repeat Simple_repeat 2 29 0 2272 144 25 10 chr1 120473733 120474136 -161719528 - L1MC1 LINE L1 -1 6332 5924 3579 123 12 5 chr1 120474395 120474996 -161718668 - L1MA9 LINE L1 -356 5956 5352 528 179 90 6 chr1 120474995 120475151 -161718513 - L1MA7 LINE L1 0 6291 6123 * 725 117 6 106 chr1 120475151 120475330 -161718334 - L1MA9 LINE L1 -780 5366 5206 224 167 42 21 chr1 120475441 120475489 -161718175 - L2 LINE L2 -8 3305 3257 888 321 112 31 chr1 120475556 120476260 -161717404 + L2 LINE L2 1467 2227 -1087 1070 176 0 36 chr1 120476272 120476465 -161717199 - AluJb SINE Alu -5 307 122 328 316 59 0 chr1 120476465 120476601 -161717063 + L2 LINE L2 2249 2392 -922 720 216 42 53 chr1 120476935 120477199 -161716465 - MIR SINE MIR -1 261 1 407 355 126 10 chr1 120478375 120478676 -161714988 - L2 LINE L2 -410 2904 2569 769 224 81 114 chr1 120479266 120479364 -161714300 - MLT1J LTR MaLR 0 511 411 2045 153 3 0 chr1 120479364 120479664 -161714000 + AluSx SINE Alu 1 301 -11 769 224 81 114 chr1 120479664 120480093 -161713571 - MLT1J LTR MaLR -100 411 1 189 367 181 0 chr1 120480238 120480273 -161713391 - L2 LINE L2 -1027 2287 2260 1888 153 0 11 chr1 120480273 120480597 -161713067 - AluJb SINE Alu 0 321 1 189 367 181 0 chr1 120480597 120480737 -161712927 - L2 LINE L2 -1054 2260 2079 399 274 92 37 chr1 120480787 120480951 -161712713 - L2 LINE L2 -1358 1956 1784 * 672 244 38 52 chr1 120480949 120481162 -161712502 + MIR SINE MIR 53 262 0 312 223 0 9 chr1 120481666 120481736 -161711928 + AluJ/monomer SINE Alu 236 290 -12 317 222 0 11 chr1 120481743 120481833 -161711831 + GA-rich Low_complexity Low_complexity 4 92 0 412 149 9 61 chr1 120481852 120481966 -161711698 + GA-rich Low_complexity Low_complexity 3 110 0 260 89 0 22 chr1 120482038 120482083 -161711581 + (GGGA)n Simple_repeat Simple_repeat 2 45 0 218 301 24 12 chr1 120482360 120482443 -161711221 + (CGG)n Simple_repeat Simple_repeat 1 84 0 6310 56 19 1 chr1 120482565 120483318 -161710346 + L1PA8 LINE L1 5401 6166 -6 1354 201 61 0 chr1 120483320 120483583 -161710081 + MLT1C LTR MaLR 189 467 0 272 173 62 37 chr1 120483976 120484057 -161709607 - HAL1 LINE L1 0 2507 2425 587 281 133 5 chr1 120484080 120484276 -161709388 - LTR33 LTR ERVL -300 221 1 1381 248 155 46 chr1 120484277 120484429 -161709235 - HAL1 LINE L1 -1427 1080 946 1726 165 40 0 chr1 120484429 120484726 -161708938 - AluJo SINE Alu -3 309 1 1381 248 155 46 chr1 120484726 120485271 -161708393 - HAL1 LINE L1 -1561 946 307 541 286 148 0 chr1 120485293 120485496 -161708168 - HAL1 LINE L1 -2266 241 9 2063 133 3 10 chr1 120485749 120486058 -161707606 + AluSx SINE Alu 1 307 -5 402 183 0 0 chr1 120486547 120486607 -161707057 + AluJ/FLAM SINE Alu 3 62 -250 1674 191 3 0 chr1 120486607 120486889 -161706775 + AluJb SINE Alu 25 307 -5 239 182 0 0 chr1 120487218 120487262 -161706402 - L2 LINE L2 -315 2957 2914 339 291 150 47 chr1 120487302 120487422 -161706242 + MIR SINE MIR 28 134 -128 1965 101 7 22 chr1 120487422 120487699 -161705965 + AluSx SINE Alu 14 286 -26 339 291 150 47 chr1 120487699 120487791 -161705873 + MIR SINE MIR 134 262 0 261 271 104 49 chr1 120487864 120488008 -161705656 + L2 LINE L2 3162 3313 0 21 0 0 0 chr1 120488561 120488582 -161705082 + AT_rich Low_complexity Low_complexity 1 21 0 618 265 137 5 chr1 120488659 120488870 -161704794 - MIR SINE MIR -4 258 20 288 137 0 0 chr1 120488958 120489009 -161704655 + (TG)n Simple_repeat Simple_repeat 2 52 0 589 262 112 26 chr1 120489187 120489565 -161704099 + L1MC/D LINE L1 5083 5514 -748 411 249 113 122 chr1 120489579 120489924 -161703740 - L2 LINE L2 -41 3272 2931 1434 178 112 109 chr1 120489925 120490297 -161703367 - MLT1C LTR MaLR 0 467 92 1766 176 21 0 chr1 120490297 120490587 -161703077 + AluJb SINE Alu 1 296 -16 1434 178 112 109 chr1 120490587 120490680 -161702984 - MLT1C LTR MaLR -375 92 1 325 288 9 27 chr1 120490719 120490830 -161702834 + L1ME LINE L1 61 169 -5950 492 259 138 62 chr1 120491301 120491814 -161701850 + L1ME LINE L1 702 1253 -4866 296 320 262 4 chr1 120491821 120492096 -161701568 - L2 LINE L2 -392 2922 2577 318 250 48 10 chr1 120492108 120492212 -161701452 - MLT1J LTR MaLR -403 108 1 1083 253 65 50 chr1 120492224 120492446 -161701218 - L2 LINE L2 -1217 2097 1865 1626 184 3 46 chr1 120492446 120492772 -161700892 + AluJo SINE Alu 1 312 0 1083 253 65 50 chr1 120492772 120492952 -161700712 - L2 LINE L2 -1449 1865 1689 257 225 150 38 chr1 120493252 120493332 -161700332 - MIR SINE MIR 0 262 174 973 137 0 0 chr1 120494531 120494662 -161699002 - FLAM_C SINE Alu -2 131 1 880 308 99 35 chr1 120494725 120495241 -161698423 - MLT1L LTR MaLR -10 605 57 843 151 0 14 chr1 120495241 120495380 -161698284 + FLAM_C SINE Alu 1 137 -6 321 375 76 19 chr1 120495456 120495720 -161697944 + L2 LINE L2 2509 2787 -527 379 296 56 0 chr1 120496255 120496363 -161697301 + L2 LINE L2 3184 3297 -16 1725 186 31 31 chr1 120496442 120496802 -161696862 - MLT1A1 LTR MaLR 0 365 6 1316 221 112 63 chr1 120496933 120497461 -161696203 - L2 LINE L2 -5 3308 2807 2400 100 29 20 chr1 120497461 120497811 -161695853 + L1PA10 LINE L1 5815 6167 -1 1316 221 112 63 chr1 120497811 120498251 -161695413 - L2 LINE L2 -506 2807 1318 2258 64 0 68 chr1 120498384 120498695 -161694969 + AluY SINE Alu 1 290 -21 182 241 69 35 chr1 120500511 120500598 -161693066 + MIR SINE MIR 160 249 -13 273 210 265 8 chr1 120501037 120501159 -161692505 - MIR SINE MIR -65 143 23 1076 274 119 115 chr1 120501278 120501894 -161691770 + L2 LINE L2 455 1067 -2247 505 57 0 14 chr1 120501894 120501964 -161691700 + FLAM_C SINE Alu 72 140 -3 1076 274 119 115 chr1 120501964 120502638 -161691026 + L2 LINE L2 1067 1819 -1495 431 307 132 0 chr1 120502904 120503093 -161690571 + MIR SINE MIR 47 260 -2 1743 154 19 42 chr1 120503228 120503540 -161690124 + AluJo SINE Alu 1 305 -7 260 223 123 54 chr1 120503639 120503769 -161689895 - LTR57-int LTR ERVL -580 4763 4625 915 124 0 29 chr1 120503854 120503991 -161689673 - FRAM SINE Alu -5 171 39 3379 242 198 24 chr1 120504445 120506214 -161687450 - L2 LINE L2 0 3313 1237 1226 108 25 2 chr1 120506347 120506587 -161687077 + AluJb SINE Alu 2 297 -15 183 365 0 0 chr1 120507236 120507288 -161686376 - L3 LINE CR1 -2 1575 1524 1850 134 14 17 chr1 120507341 120507633 -161686031 + AluJb SINE Alu 1 291 -21 226 242 3 0 chr1 120507787 120507846 -161685818 - MIR SINE MIR -51 157 97 209 217 43 58 chr1 120508429 120508498 -161685166 - MIR SINE MIR -111 151 84 483 342 161 15 chr1 120508506 120508848 -161684816 - L2 LINE L2 -2 3270 2879 208 216 0 0 chr1 120509006 120509043 -161684621 + L2 LINE L2 3227 3263 -9 2312 101 7 0 chr1 120509612 120509920 -161683744 + AluSq SINE Alu 3 312 -1 496 354 132 10 chr1 120509969 120510455 -161683209 - L2 LINE L2 -527 2787 2243 940 143 0 0 chr1 120510688 120510814 -161682850 + FLAM_C SINE Alu 1 126 -7 1409 97 37 28 chr1 120510872 120510929 -161682735 + L1MA3 LINE L1 6088 6143 -162 1560 175 0 65 chr1 120510929 120511254 -161682410 + AluJo SINE Alu 3 306 -6 1409 97 37 28 chr1 120511254 120511412 -161682252 + L1MA3 LINE L1 6143 6305 0 2351 79 3 0 chr1 120511415 120511706 -161681958 - AluSx SINE Alu -20 292 1 893 215 16 11 chr1 120512839 120513025 -161680639 - MER5A DNA MER1_type 0 189 3 282 239 37 64 chr1 120513303 120513412 -161680252 + L2 LINE L2 1640 1745 -1569 486 0 0 0 chr1 120513508 120513562 -161680102 + (TG)n Simple_repeat Simple_repeat 1 54 0 188 309 191 30 chr1 120513790 120513958 -161679706 + L2 LINE L2 2035 2229 -1085 195 250 167 0 chr1 120514084 120514144 -161679520 + L2 LINE L2 3187 3256 -16 237 282 118 12 chr1 120514320 120514405 -161679259 + L2 LINE L2 2648 2741 -573 193 290 122 47 chr1 120514739 120514846 -161678818 + L2 LINE L2 3199 3313 0 368 172 116 20 chr1 120515595 120515697 -161677967 + MER50-int LTR ERV1 3644 3725 -1861 23 0 0 0 chr1 120516337 120516360 -161677304 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 120517578 120517607 -161676057 + AT_rich Low_complexity Low_complexity 1 29 0 927 146 46 13 chr1 120517715 120517866 -161675798 - FRAM SINE Alu -10 166 11 2480 41 3 3 chr1 120518027 120518322 -161675342 + L1PA4 LINE L1 5861 6155 0 939 245 36 0 chr1 120518970 120519166 -161674498 + MER58A DNA MER1_type 3 205 -19 369 301 11 94 chr1 120519416 120519565 -161674099 - MIR SINE MIR -17 245 126 2362 101 7 0 chr1 120519565 120519873 -161673791 + AluSx SINE Alu 1 310 -2 369 301 11 94 chr1 120519873 120519989 -161673675 - MIR SINE MIR -136 126 2 227 343 126 39 chr1 120520051 120520258 -161673406 - L2 LINE L2 -466 2848 2624 382 345 71 6 chr1 120520311 120520479 -161673185 + MIR SINE MIR 22 200 -62 1462 170 80 18 chr1 120520547 120520823 -161672841 - AluJo SINE Alu -19 293 1 479 268 134 17 chr1 120520843 120521022 -161672642 + MIR SINE MIR 6 205 -57 1177 167 5 19 chr1 120521024 120521240 -161672424 - AluJo SINE Alu -11 301 89 647 277 28 12 chr1 120521320 120521573 -161672091 - L1MEc LINE L1 -4868 1528 1272 * 1102 247 24 48 chr1 120521557 120521893 -161671771 - L1MEc LINE L1 -6030 366 39 832 221 13 0 chr1 120522282 120522436 -161671228 + FRAM SINE Alu 1 151 -25 21 57 0 0 chr1 120524434 120524469 -161669195 + AT_rich Low_complexity Low_complexity 1 35 0 33 25 0 0 chr1 120525291 120525331 -161668333 + AT_rich Low_complexity Low_complexity 1 40 0 888 206 0 29 chr1 120525809 120525979 -161667685 - FRAM SINE Alu -1 165 1 617 149 0 0 chr1 120527307 120527394 -161666270 - AluJo SINE Alu -224 88 2 4166 154 19 122 chr1 120527629 120529160 -161664504 - pTR5 LTR ERV1 0 2606 1524 3830 91 54 75 chr1 120529160 120529628 -161664036 + L1MA3 LINE L1 5664 6116 -189 2344 88 3 0 chr1 120529628 120529924 -161663740 + AluSx SINE Alu 1 297 -15 3830 91 54 75 chr1 120529924 120530106 -161663558 + L1MA3 LINE L1 6116 6300 -5 2385 92 0 3 chr1 120530806 120531109 -161662555 + AluSx SINE Alu 1 302 -10 554 135 31 10 chr1 120532228 120532324 -161661340 + MER4A LTR ERV1 1 98 -566 1940 130 3 24 chr1 120532324 120532677 -161660987 + MER4A LTR ERV1 261 664 0 443 226 137 8 chr1 120533403 120533527 -161660137 + MER58B DNA MER1_type 202 341 0 746 277 147 34 chr1 120534188 120534288 -161659376 + MLT1J LTR MaLR 1 88 -423 1994 162 87 20 chr1 120534288 120534689 -161658975 + MSTA LTR MaLR 1 428 0 746 277 147 34 chr1 120534689 120535003 -161658661 + MLT1J LTR MaLR 88 462 -49 1518 165 23 23 chr1 120535117 120535398 -161658266 + AluJb SINE Alu 27 307 0 2011 130 163 5 chr1 120535614 120535982 -161657682 + MSTA LTR MaLR 1 426 -2 1560 182 0 52 chr1 120537059 120537350 -161656314 + AluJo SINE Alu 7 282 -30 21 0 0 0 chr1 120537350 120537371 -161656293 + AT_rich Low_complexity Low_complexity 1 21 0 778 173 0 16 chr1 120537561 120537688 -161655976 - FLAM_C SINE Alu -18 125 1 2032 151 10 0 chr1 120539097 120539471 -161654193 + AluSx SINE Alu 1 377 0 195 42 0 0 chr1 120539480 120539504 -161654160 + (GGGGA)n Simple_repeat Simple_repeat 1 24 0 1827 244 57 34 chr1 120539651 120540262 -161653402 + L1MC4 LINE L1 7417 8041 -1 2039 102 0 4 chr1 120540397 120540662 -161653002 + AluSg SINE Alu 1 264 -46 3465 122 87 14 chr1 120540664 120540767 -161652897 - L1MA5 LINE L1 -402 5898 5804 2160 81 50 7 chr1 120540767 120541050 -161652614 - AluSq SINE Alu -18 295 1 3465 122 87 14 chr1 120541050 120542067 -161651597 - L1MA5 LINE L1 -496 5804 4705 396 0 0 0 chr1 120543583 120543627 -161650037 + (CA)n Simple_repeat Simple_repeat 2 45 0 1621 148 82 0 chr1 120544228 120544498 -161649166 - AluJo SINE Alu -20 292 1 924 213 163 8 chr1 120544643 120545118 -161648546 + MER92B LTR ERV1 1 399 -13 789 166 0 0 chr1 120545709 120545854 -161647810 + (CA)n Simple_repeat Simple_repeat 2 146 0 2149 77 10 40 chr1 120545868 120546167 -161647497 - AluSg SINE Alu -20 290 1 567 171 0 0 chr1 120546184 120546272 -161647392 - FLAM_A SINE Alu -26 116 29 913 164 7 50 chr1 120546302 120546494 -161647170 + MER31B LTR ERV1 5 164 -302 852 143 139 28 chr1 120546735 120546986 -161646678 - Charlie5 DNA MER1_type -102 2510 2232 570 177 0 0 chr1 120547015 120547111 -161646553 + AluJb SINE Alu 201 296 -16 385 194 0 0 chr1 120547111 120547178 -161646486 - Charlie5 DNA MER1_type -2524 88 22 375 270 184 0 chr1 120547199 120547351 -161646313 + MER5A DNA MER1_type 5 184 -5 438 91 56 2 chr1 120547865 120547945 -161645719 + L1M3 LINE L1 5652 5734 -446 2882 13 0 0 chr1 120548376 120548686 -161644978 + AluYa5 SINE Alu 1 310 -1 195 242 61 61 chr1 120549754 120549820 -161643844 - L2 LINE L2 -14 3258 3193 1463 139 143 8 chr1 120549913 120550171 -161643493 + AluJo SINE Alu 1 293 -19 2274 124 163 64 chr1 120550276 120550810 -161642854 + L1MB3 LINE L1 5597 6183 0 6422 194 13 31 chr1 120551522 120552533 -161641131 + HERVFH21 LTR ERV1 578 1496 -5013 2481 62 0 19 chr1 120552533 120552842 -161640822 - AluY SINE Alu -8 303 1 6422 194 13 31 chr1 120552842 120553221 -161640443 + HERVFH21 LTR ERV1 1496 1880 -4629 287 277 0 45 chr1 120553311 120553423 -161640241 + HERVFH21 LTR ERV1 1944 2050 -4479 2676 43 0 0 chr1 120553432 120553731 -161639933 - AluY SINE Alu -12 299 1 2332 99 0 0 chr1 120553902 120554196 -161639468 - AluSx SINE Alu -17 295 2 630 225 67 67 chr1 120554365 120554708 -161638956 + MLT1G1 LTR MaLR 86 372 -170 277 302 38 19 chr1 120554714 120554820 -161638844 + LTR16C LTR ERVL 133 240 -251 * 700 170 0 0 chr1 120554812 120554924 -161638740 + MLT1B LTR MaLR 277 388 -2 689 153 57 16 chr1 120555180 120555304 -161638360 + FLAM_C SINE Alu 2 130 -3 787 227 164 14 chr1 120555373 120555593 -161638071 + MER69 DNA AcHobo 339 591 -1935 538 144 11 0 chr1 120555590 120555680 -161637984 + MER69 DNA AcHobo 2433 2523 -3 * 1936 135 33 119 chr1 120555745 120556198 -161637466 - MLT2D LTR ERVL 0 414 1 391 197 0 0 chr1 120556476 120556542 -161637122 + MSTB1 LTR MaLR 4 69 -363 * 1324 145 53 4 chr1 120556541 120556768 -161636896 + MSTB1 LTR MaLR 195 432 0 264 214 58 78 chr1 120556836 120556939 -161636725 + MIR SINE MIR 107 207 -55 579 179 0 0 chr1 120557075 120557170 -161636494 + AluJo SINE Alu 2 96 -216 4731 110 110 125 chr1 120557171 120558599 -161635065 + pTR5 LTR ERV1 741 2438 0 963 190 62 20 chr1 120558600 120558795 -161634869 + AluJo SINE Alu 95 297 -15 406 196 0 13 chr1 120558796 120558939 -161634725 + GA-rich Low_complexity Low_complexity 1 141 0 371 187 73 89 chr1 120558951 120559019 -161634645 - LTR67 LTR ERVL 0 557 490 2066 137 7 0 chr1 120559019 120559311 -161634353 - AluSq SINE Alu -19 294 1 371 187 73 89 chr1 120559311 120559365 -161634299 - LTR67 LTR ERVL -67 490 437 728 191 0 30 chr1 120559375 120559506 -161634158 - FLAM_A SINE Alu -6 127 1 271 308 52 87 chr1 120559506 120559678 -161633986 - LTR67 LTR ERVL -357 200 35 964 126 102 6 chr1 120559711 120559878 -161633786 + MER46B DNA MER2_type 1 58 -178 21709 149 48 10 chr1 120559882 120564064 -161629600 + L1M1 LINE L1 22 4401 -3164 2373 96 0 10 chr1 120564064 120564378 -161629286 + AluY SINE Alu 1 311 0 21709 149 48 10 chr1 120564378 120564925 -161628739 + L1M1 LINE L1 4401 4925 -2640 321 47 0 0 chr1 120564926 120564969 -161628695 + (TCTCCC)n Simple_repeat Simple_repeat 1 43 0 9838 29 10 180 chr1 120564974 120566601 -161627063 + SVA Other Other 38 1391 0 845 11 0 0 chr1 120566601 120566692 -161626972 + LTR2B LTR ERV1 358 448 -42 496 134 37 0 chr1 120566699 120566781 -161626883 + L1M1 LINE L1 4914 4998 -2567 1202 100 11 6 chr1 120566781 120566816 -161626848 + L1MA2 LINE L1 6124 6157 -147 2042 145 0 0 chr1 120566816 120567138 -161626526 + AluSx SINE Alu 1 322 0 1202 100 11 6 chr1 120567138 120567281 -161626383 + L1MA2 LINE L1 6157 6304 0 1208 127 51 15 chr1 120567286 120567483 -161626181 + MER46B DNA MER2_type 33 236 0 714 143 24 32 chr1 120567590 120567716 -161625948 - FLAM_A SINE Alu -8 125 1 195 308 47 28 chr1 120567722 120567829 -161625835 - MIR SINE MIR -4 258 150 348 221 0 0 chr1 120567830 120567898 -161625766 - FAM SINE Alu -6 173 106 1772 161 0 34 chr1 120567898 120568214 -161625450 - AluJb SINE Alu 0 306 1 1199 184 159 62 chr1 120568237 120568653 -161625011 - LTR56 LTR ERV1 0 444 9 593 146 0 0 chr1 120568669 120568758 -161624906 - FRAM/FAM SINE Alu -96 89 1 240 287 157 19 chr1 120568768 120568876 -161624788 - MIR SINE MIR -119 143 21 1317 162 116 61 chr1 120569084 120569264 -161624400 - MER2 DNA MER2_type 0 345 176 782 154 23 0 chr1 120569264 120569394 -161624270 + FLAM_C SINE Alu 1 133 0 1317 162 116 61 chr1 120569394 120569540 -161624124 - MER2 DNA MER2_type -169 176 1 319 115 19 19 chr1 120569866 120569918 -161623746 - MER75 DNA T2_type 0 514 463 239 179 0 154 chr1 120569942 120569956 -161623708 + LTR37B LTR ERV1 6 20 -448 1886 167 0 16 chr1 120569956 120570261 -161623403 + AluJb SINE Alu 1 300 -12 239 179 0 154 chr1 120570261 120570289 -161623375 + LTR37B LTR ERV1 20 35 -433 2318 78 0 0 chr1 120570289 120570612 -161623052 + AluY SINE Alu 1 323 0 239 179 0 154 chr1 120570612 120570645 -161623019 + LTR37B LTR ERV1 35 71 -397 352 115 0 0 chr1 120570927 120570979 -161622685 - FRAM/FAM SINE Alu -115 51 1 784 86 33 79 chr1 120570980 120571104 -161622560 - L1M LINE L1 -2387 5398 5281 2279 83 14 0 chr1 120571104 120571392 -161622272 + AluSc SINE Alu 1 292 -17 784 86 33 79 chr1 120571392 120571419 -161622245 - L1M LINE L1 -2504 5281 5254 3695 68 56 0 chr1 120571576 120572062 -161621602 + LTR10D LTR ERV1 1 513 0 186 223 117 48 chr1 120572315 120572418 -161621246 - MIR3 SINE MIR -50 158 49 852 268 121 20 chr1 120573210 120573328 -161620336 - HAL1 LINE L1 -1989 518 413 2492 78 0 10 chr1 120573328 120573635 -161620029 - AluSg SINE Alu -6 304 1 852 268 121 20 chr1 120573635 120573863 -161619801 - HAL1 LINE L1 -2094 413 137 358 221 87 10 chr1 120573872 120573976 -161619688 + L1MC/D LINE L1 5348 5459 -2349 1658 206 95 53 chr1 120574148 120574648 -161619016 - Charlie2 DNA MER1_type -339 2523 1990 1411 169 115 15 chr1 120574648 120574909 -161618755 + AluJb SINE Alu 1 287 -25 1658 206 95 53 chr1 120574909 120575030 -161618634 - Charlie2 DNA MER1_type -872 1990 1876 635 242 141 44 chr1 120575023 120575271 -161618393 - Charlie2 DNA MER1_type -2450 332 61 * 2447 82 0 7 chr1 120575937 120576242 -161617422 + AluSq SINE Alu 1 303 -10 1934 154 0 3 chr1 120576243 120576535 -161617129 + AluSq SINE Alu 1 291 -22 240 280 50 20 chr1 120577101 120577201 -161616463 - L2 LINE L2 -6 3266 3164 2106 113 0 56 chr1 120577266 120577586 -161616078 - AluSx SINE Alu -10 302 1 265 324 37 22 chr1 120577649 120577785 -161615879 + L2 LINE L2 2902 3039 -233 2269 217 40 44 chr1 120578057 120578603 -161615061 + L1ME1 LINE L1 4653 5199 -967 1903 155 3 3 chr1 120578603 120578893 -161614771 + AluJo SINE Alu 7 296 -16 2269 217 40 44 chr1 120578893 120579182 -161614482 + L1ME1 LINE L1 5199 5477 -689 1437 198 24 3 chr1 120579182 120579470 -161614194 - AluJo SINE Alu -18 294 1 2269 217 40 44 chr1 120579470 120579584 -161614080 + L1ME1 LINE L1 5477 5590 -576 3421 108 29 2 chr1 120579586 120580075 -161613589 - MER84 LTR ERVI 0 507 6 1103 125 0 0 chr1 120580080 120580232 -161613432 - MER84-int LTR ERV1 -1 4953 4802 369 109 0 0 chr1 120580232 120580287 -161613377 + Alu SINE Alu 246 300 -2 678 226 164 37 chr1 120580379 120580702 -161612962 + L1ME1 LINE L1 5746 6109 -57 433 226 61 61 chr1 120580608 120580772 -161612892 + L1MA10 LINE L1 6170 6333 -1 * 189 234 143 13 chr1 120580772 120580849 -161612815 + MIR SINE MIR 141 227 -35 264 296 87 17 chr1 120581615 120581730 -161611934 - MIR SINE MIR -22 240 118 186 133 0 0 chr1 120582430 120582460 -161611204 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 213 203 31 16 chr1 120582503 120582567 -161611097 + (CAG)n Simple_repeat Simple_repeat 3 67 0 198 103 0 0 chr1 120584708 120584737 -161608927 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1235 184 128 15 chr1 120586869 120587135 -161606529 + AluJo SINE Alu 1 296 -16 278 324 23 17 chr1 120589292 120589468 -161604196 + GA-rich Low_complexity Low_complexity 2 178 0 230 308 9 9 chr1 120589502 120589609 -161604055 + GA-rich Low_complexity Low_complexity 2 108 0 2015 146 3 13 chr1 120591225 120591540 -161602124 - AluSx SINE Alu 0 312 1 299 336 72 24 chr1 120591845 120591970 -161601694 - L2 LINE L2 -1 3271 3141 223 308 60 60 chr1 120592067 120592184 -161601480 - MIR SINE MIR -118 144 28 386 259 13 1 chr1 120593625 120593728 -161599936 - MIR SINE MIR -46 162 58 24 32 0 0 chr1 120593771 120593802 -161599862 + AT_rich Low_complexity Low_complexity 1 31 0 2096 152 0 0 chr1 120593802 120594111 -161599553 - AluSx SINE Alu -3 309 1 198 0 0 0 chr1 120594123 120594145 -161599519 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1971 152 0 0 chr1 120594145 120594432 -161599232 - AluJb SINE Alu -15 297 8 701 280 29 11 chr1 120595000 120595175 -161598489 - MER5B DNA MER1_type 0 178 1 718 260 76 3 chr1 120595560 120595770 -161597894 + MIR SINE MIR 36 256 -6 181 174 65 0 chr1 120596853 120596899 -161596765 + L2 LINE L2 3265 3313 0 2457 70 0 0 chr1 120597198 120597496 -161596168 - AluY SINE Alu -13 298 1 2246 150 160 10 chr1 120597747 120598153 -161595511 + MLT1C LTR MaLR 1 467 0 246 319 14 0 chr1 120598396 120598465 -161595199 + L2 LINE L2 3227 3296 -17 191 176 39 0 chr1 120598486 120598537 -161595127 + GA-rich Low_complexity Low_complexity 4 56 0 297 51 0 0 chr1 120598899 120598938 -161594726 + (TC)n Simple_repeat Simple_repeat 1 39 0 287 275 100 42 chr1 120599146 120599266 -161594398 + L2 LINE L2 3187 3313 0 22 35 0 0 chr1 120599489 120599518 -161594146 + AT_rich Low_complexity Low_complexity 1 29 0 285 29 0 0 chr1 120602307 120602341 -161591323 + (CA)n Simple_repeat Simple_repeat 2 35 0 352 327 65 18 chr1 120602732 120602900 -161590764 + MIR SINE MIR 13 188 -74 217 274 0 16 chr1 120602901 120602963 -161590701 + MIR SINE MIR 156 216 -46 207 0 0 0 chr1 120602964 120602987 -161590677 + (TG)n Simple_repeat Simple_repeat 1 23 0 2290 59 55 3 chr1 120603763 120604053 -161589611 + AluY SINE Alu 1 305 -6 804 164 0 0 chr1 120604148 120604264 -161589400 - FLAM_C SINE Alu -26 117 2 24 32 0 0 chr1 120604391 120604422 -161589242 + AT_rich Low_complexity Low_complexity 1 31 0 246 351 0 26 chr1 120604943 120605020 -161588644 + L2 LINE L2 3182 3256 -16 885 128 15 15 chr1 120606325 120606458 -161587206 - FLAM_A SINE Alu 0 133 1 2729 205 80 33 chr1 120606709 120607382 -161586282 + L1ME1 LINE L1 4726 5365 -801 2050 153 0 0 chr1 120607382 120607682 -161585982 - AluJb SINE Alu -12 300 1 2729 205 80 33 chr1 120607682 120607741 -161585923 + L1ME1 LINE L1 5365 5420 -746 1694 178 3 11 chr1 120607741 120608054 -161585610 + AluJb SINE Alu 1 311 0 2729 205 80 33 chr1 120608054 120608687 -161584977 + L1ME1 LINE L1 5420 6161 -5 820 295 150 17 chr1 120608790 120609143 -161584521 - L2 LINE L2 -3 3310 2911 534 286 53 5 chr1 120609160 120609349 -161584315 + LTR16A LTR ERVL 52 249 -201 260 250 15 0 chr1 120609382 120609450 -161584214 + MER96 DNA MER1_type? 21 89 -86 2071 246 36 58 chr1 120609509 120610228 -161583436 - L2 LINE L2 -2133 1181 479 764 278 74 26 chr1 120610815 120611085 -161582579 - MLT1J LTR MaLR -3 508 226 1373 148 9 17 chr1 120611232 120611462 -161582202 + AluJb SINE Alu 1 228 -84 1819 168 28 0 chr1 120611743 120612028 -161581636 + AluJb SINE Alu 1 293 -19 879 233 102 95 chr1 120612560 120612770 -161580894 - LTR41 LTR ERVL 0 766 559 1575 186 9 25 chr1 120612770 120613087 -161580577 + AluJo SINE Alu 1 312 0 879 233 102 95 chr1 120613087 120613645 -161580019 - LTR41 LTR ERVL -207 559 1 1817 128 0 21 chr1 120614964 120615119 -161578545 - AluSx SINE Alu -25 287 139 2288 114 0 0 chr1 120615119 120615425 -161578239 - AluSg SINE Alu -4 306 1 1817 128 0 21 chr1 120615425 120615557 -161578107 - AluSx SINE Alu -173 139 6 1433 106 53 0 chr1 120615870 120616077 -161577587 - L1PA7 LINE L1 -3 6151 5934 1789 156 10 0 chr1 120616245 120616540 -161577124 + AluJb SINE Alu 6 303 -9 1000 149 46 23 chr1 120617113 120617288 -161576376 - AluJo SINE Alu -5 307 129 461 175 105 9 chr1 120617289 120617403 -161576261 - L1MB3 LINE L1 -58 6125 6001 836 147 0 16 chr1 120617414 120617543 -161576121 - AluJo SINE Alu -185 127 1 1619 151 30 8 chr1 120617559 120617824 -161575840 - AluJo SINE Alu -41 271 1 1012 135 0 0 chr1 120617831 120617979 -161575685 - AluSp/q SINE Alu -9 304 157 289 399 0 0 chr1 120618786 120618964 -161574700 + C-rich Low_complexity Low_complexity 1 178 0 263 297 6 55 chr1 120618924 120619089 -161574575 + CT-rich Low_complexity Low_complexity 5 161 0 * 204 318 16 0 chr1 120619100 120619163 -161574501 + C-rich Low_complexity Low_complexity 5 68 0 2593 65 0 0 chr1 120619276 120619586 -161574078 + AluY SINE Alu 1 310 -1 221 347 10 10 chr1 120621105 120621203 -161572461 + MIR SINE MIR 35 132 -76 180 253 21 74 chr1 120621560 120621655 -161572009 + L2 LINE L2 3180 3269 -44 206 283 57 75 chr1 120622649 120622755 -161570909 - L2 LINE L2 -28 3285 3182 518 272 78 23 chr1 120622797 120623014 -161570650 - MIR SINE MIR -1 261 33 1883 164 7 0 chr1 120623210 120623508 -161570156 - AluJb SINE Alu -12 300 1 28 29 0 0 chr1 120623511 120623546 -161570118 + AT_rich Low_complexity Low_complexity 1 35 0 765 284 223 42 chr1 120624724 120625234 -161568430 - L2 LINE L2 -2 3270 2853 2197 133 0 3 chr1 120625234 120625542 -161568122 - AluSx SINE Alu -5 307 1 765 284 223 42 chr1 120625542 120626252 -161567412 - L2 LINE L2 -419 2853 1826 959 253 107 15 chr1 120627054 120627494 -161566170 - LTR33 LTR ERVL -1 520 6 2234 109 7 13 chr1 120627588 120627892 -161565772 + AluSx SINE Alu 1 302 -10 516 262 92 0 chr1 120627930 120628071 -161565593 - MIR SINE MIR -61 201 48 189 0 0 0 chr1 120628308 120628329 -161565335 + (TA)n Simple_repeat Simple_repeat 1 21 0 2139 124 0 0 chr1 120628344 120628626 -161565038 - AluSx SINE Alu -30 282 1 216 353 74 8 chr1 120628650 120628772 -161564892 + L2 LINE L2 3136 3265 -7 252 285 69 54 chr1 120628981 120629111 -161564553 + MIR SINE MIR 81 212 -50 207 257 18 53 chr1 120629945 120630058 -161563606 + CT-rich Low_complexity Low_complexity 1 109 0 2235 105 0 7 chr1 120631484 120631816 -161561848 - AluSx SINE Alu 0 312 3 488 293 145 16 chr1 120631915 120632294 -161561370 - L1M4 LINE L1 -1192 4954 4527 562 252 135 99 chr1 120632296 120632672 -161560992 - L1M4 LINE L1 -1685 4461 4053 1664 140 25 35 chr1 120632672 120632958 -161560706 - AluJo SINE Alu -17 295 13 562 252 135 99 chr1 120632958 120633195 -161560469 - L1M4 LINE L1 -2093 4053 3826 2146 89 55 0 chr1 120633212 120633503 -161560161 - AluY SINE Alu -4 307 1 394 298 128 33 chr1 120633740 120634549 -161559115 - L1M4 LINE L1 -2574 3572 2656 348 293 17 132 chr1 120634657 120634840 -161558824 - MIR SINE MIR -4 204 42 1846 108 4 8 chr1 120635497 120635747 -161557917 - AluSx SINE Alu -53 259 11 462 249 81 27 chr1 120636647 120636783 -161556881 - L2 LINE L2 -1 3312 3162 2511 57 0 3 chr1 120636783 120637079 -161556585 + AluSg SINE Alu 1 295 -15 462 249 81 27 chr1 120637079 120637127 -161556537 - L2 LINE L2 -151 3162 3118 1153 206 14 0 chr1 120637145 120637354 -161556310 + MIR SINE MIR 29 240 -22 220 295 39 0 chr1 120637441 120637519 -161556145 - L2 LINE L2 -262 3051 2971 526 194 161 39 chr1 120638479 120638634 -161555030 - MER5A DNA MER1_type -6 183 10 25 0 0 0 chr1 120638710 120638735 -161554929 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr1 120638955 120638983 -161554681 + AT_rich Low_complexity Low_complexity 1 28 0 1045 258 125 37 chr1 120639010 120639114 -161554550 - L1ME4a LINE L1 0 6121 6028 2229 106 7 0 chr1 120639114 120639406 -161554258 - AluSx SINE Alu -18 294 1 1045 258 125 37 chr1 120639406 120639977 -161553687 - L1ME4a LINE L1 -93 6028 5374 2146 117 0 29 chr1 120640182 120640498 -161553166 + AluSx SINE Alu 1 307 -5 328 306 95 1 chr1 120640509 120640648 -161553016 + MIR SINE MIR 38 187 -65 569 266 105 79 chr1 120640663 120640768 -161552896 + L1ME LINE L1 5256 5357 -764 1823 96 65 55 chr1 120640768 120641061 -161552603 + AluSg SINE Alu 1 296 -14 569 266 105 79 chr1 120641061 120641407 -161552257 + L1ME LINE L1 5357 5699 -422 497 251 41 18 chr1 120642319 120642490 -161551174 + MER5B DNA MER1_type 1 175 -3 297 0 0 0 chr1 120644586 120644619 -161549045 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 768 172 0 0 chr1 120644621 120644737 -161548927 - FLAM_C SINE Alu -17 116 1 2555 50 0 0 chr1 120644874 120645174 -161548490 - AluY SINE Alu -11 300 1 2160 137 0 6 chr1 120645665 120645979 -161547685 + AluJb SINE Alu 1 312 0 292 271 0 0 chr1 120646607 120646677 -161546987 + Charlie1 DNA MER1_type 2 71 -2690 914 143 65 28 chr1 120646727 120646944 -161546720 + Charlie1 DNA MER1_type 2427 2651 -110 478 174 54 0 chr1 120647143 120647235 -161546429 + Charlie1 DNA MER1_type 2665 2761 0 407 230 71 0 chr1 120647245 120647358 -161546306 - MIR SINE MIR -71 191 71 2994 155 67 4 chr1 120647366 120647857 -161545807 - MLT1F1 LTR MaLR 0 567 46 725 167 44 0 chr1 120647864 120647978 -161545686 + FLAM_C SINE Alu 2 120 -13 185 0 40 0 chr1 120647982 120648007 -161545657 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 426 169 108 24 chr1 120648007 120648090 -161545574 + FRAM SINE Alu 71 160 -16 227 280 0 0 chr1 120648128 120648178 -161545486 - MIR SINE MIR -177 85 36 481 285 117 9 chr1 120650372 120650586 -161543078 + L3 LINE CR1 1329 1565 -12 191 213 0 33 chr1 120650823 120650884 -161542780 + GA-rich Low_complexity Low_complexity 5 63 0 267 267 14 137 chr1 120651046 120651192 -161542472 - MIR3 SINE MIR -3 205 78 2332 109 0 0 chr1 120651237 120651540 -161542124 - AluSx SINE Alu -9 303 1 1437 147 13 93 chr1 120651616 120651928 -161541736 - AluJo SINE Alu -24 288 2 210 323 0 0 chr1 120652237 120652299 -161541365 - MIR SINE MIR -155 107 46 312 224 82 24 chr1 120652339 120652424 -161541240 - L2 LINE L2 -42 3271 3182 1448 166 59 42 chr1 120652771 120653060 -161540604 - AluJo SINE Alu 0 312 19 1596 173 32 7 chr1 120653087 120653370 -161540294 - AluJo SINE Alu -22 290 1 414 295 62 49 chr1 120653384 120653608 -161540056 - L2 LINE L2 -575 2739 2513 788 237 136 30 chr1 120653678 120653725 -161539939 + MIR SINE MIR 1 42 -220 2258 100 3 3 chr1 120653725 120654026 -161539638 - AluSq SINE Alu -12 301 1 788 237 136 30 chr1 120654026 120654214 -161539450 + MIR SINE MIR 42 261 -1 2652 31 0 19 chr1 120654902 120655219 -161538445 + AluY SINE Alu 1 311 0 853 267 170 32 chr1 120656731 120657219 -161536445 + L1MC4a LINE L1 5366 5647 -509 666 155 68 0 chr1 120657234 120657337 -161536327 - FLAM_A SINE Alu -32 110 1 1397 161 107 6 chr1 120658082 120658494 -161535170 + LTR54B LTR ERV1 1 510 0 264 141 78 62 chr1 120658637 120658701 -161534963 - Charlie4 DNA MER1_type -5 1956 1892 2350 87 20 0 chr1 120659372 120659672 -161533992 - AluSx SINE Alu -6 306 1 1022 164 20 36 chr1 120660288 120660483 -161533181 - AluJb SINE Alu -19 293 102 539 149 0 0 chr1 120660517 120660591 -161533073 - AluJ SINE Alu -195 117 44 402 221 25 49 chr1 120661054 120661176 -161532488 + MIR SINE MIR 96 214 -48 1591 158 9 81 chr1 120661245 120661567 -161532097 + AluJo SINE Alu 1 299 -13 353 297 93 39 chr1 120661692 120662133 -161531531 + L1MC/D LINE L1 4500 4964 -1182 351 211 23 70 chr1 120662148 120662276 -161531388 - LTR33A LTR ERVL -6 517 396 291 265 152 15 chr1 120662775 120662907 -161530757 + L1MC/D LINE L1 5583 5732 -2076 22 35 0 0 chr1 120663178 120663207 -161530457 + AT_rich Low_complexity Low_complexity 1 29 0 917 149 0 0 chr1 120664343 120664477 -161529187 - AluJo SINE Alu -178 134 1 299 346 10 0 chr1 120664912 120665013 -161528651 + MIR SINE MIR 161 262 0 333 281 47 53 chr1 120665034 120665205 -161528459 + MER3 DNA MER1_type 38 207 -2 * 1217 173 0 5 chr1 120665205 120665254 -161528410 - MER3 DNA MER1_type -161 48 1 900 219 12 0 chr1 120665529 120665698 -161527966 - FAM SINE Alu -4 171 1 2451 86 0 3 chr1 120665726 120666029 -161527635 + AluSc SINE Alu 1 302 -7 21 36 0 0 chr1 120666101 120666129 -161527535 + AT_rich Low_complexity Low_complexity 1 28 0 561 236 98 25 chr1 120666385 120666588 -161527076 + L1MEd LINE L1 30 247 -5872 505 276 130 29 chr1 120666682 120667383 -161526281 + L1MEd LINE L1 457 1255 -4864 2006 149 3 0 chr1 120667663 120667965 -161525699 + AluSg SINE Alu 1 303 -7 474 303 84 17 chr1 120668396 120668634 -161525030 + L1ME3A LINE L1 5687 5940 -230 476 273 31 62 chr1 120668646 120668906 -161524758 + L1M4b LINE L1 10 261 -6598 186 71 0 0 chr1 120669023 120669051 -161524613 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2352 85 0 0 chr1 120669051 120669334 -161524330 - AluSx SINE Alu -29 283 1 1712 178 0 47 chr1 120669480 120669800 -161523864 + AluJo SINE Alu 1 305 -7 25 0 0 0 chr1 120669959 120669984 -161523680 + AT_rich Low_complexity Low_complexity 1 25 0 869 198 164 20 chr1 120670064 120670357 -161523307 + L1M4b LINE L1 1331 1665 -5194 959 256 32 11 chr1 120670360 120670641 -161523023 + L1M4b LINE L1 1764 2050 -4909 203 136 23 23 chr1 120671687 120671731 -161521933 + (TA)n Simple_repeat Simple_repeat 2 45 0 2446 100 0 0 chr1 120672735 120673045 -161520619 + AluSg SINE Alu 1 310 0 1122 71 0 0 chr1 120673570 120673704 -161519960 + AluY SINE Alu 157 293 -18 186 43 0 0 chr1 120673704 120673727 -161519937 + (CA)n Simple_repeat Simple_repeat 2 24 0 2086 113 17 0 chr1 120673741 120674034 -161519630 + AluSx SINE Alu 1 298 -14 1752 152 52 7 chr1 120674087 120674377 -161519287 - AluJo SINE Alu -8 304 2 2261 91 13 3 chr1 120675286 120675584 -161518080 + AluSq SINE Alu 1 301 -12 1107 187 75 34 chr1 120675737 120675940 -161517724 + MER33 DNA MER1_type 1 221 -2364 803 150 63 16 chr1 120675940 120676067 -161517597 - FLAM_A SINE Alu 0 133 1 1107 187 75 34 chr1 120676067 120676157 -161517507 + MER33 DNA MER1_type 221 306 -18 2158 137 34 50 chr1 120676795 120677176 -161516488 + THE1C LTR MaLR 1 375 0 278 327 52 24 chr1 120678052 120678263 -161515401 + L1ME3 LINE L1 803 1019 -6103 234 0 0 0 chr1 120678265 120678291 -161515373 + (A)n Simple_repeat Simple_repeat 1 26 0 387 294 72 6 chr1 120678657 120678837 -161514827 + L1ME3 LINE L1 1423 1614 -5508 1353 136 47 4 chr1 120678837 120679073 -161514591 + L1MA4 LINE L1 6050 6295 -5 231 235 84 25 chr1 120679131 120679250 -161514414 + L1ME3 LINE L1 1411 1536 -4887 2225 191 62 27 chr1 120679303 120679791 -161513873 + L1ME1 LINE L1 5654 6158 -8 1907 260 116 32 chr1 120679797 120681438 -161512226 + L1ME3 LINE L1 1788 3541 -3400 229 57 0 0 chr1 120681438 120681473 -161512191 - AluSx SINE Alu 0 302 268 1254 161 5 0 chr1 120681473 120681666 -161511998 - AluSx SINE Alu -118 194 1 5568 252 66 39 chr1 120681666 120682016 -161511648 + L1ME3 LINE L1 3531 3870 -3071 1622 93 65 0 chr1 120682016 120682231 -161511433 + MER30 DNA MER1_type 1 229 -1 5568 252 66 39 chr1 120682231 120682367 -161511297 + L1ME3 LINE L1 3870 4001 -2940 2147 113 3 10 chr1 120682367 120682667 -161510997 - AluSx SINE Alu -12 300 3 5568 252 66 39 chr1 120682667 120683357 -161510307 + L1ME3 LINE L1 4001 4671 -2270 2001 165 0 13 chr1 120683357 120683673 -161509991 + AluJb SINE Alu 1 312 0 5568 252 66 39 chr1 120683673 120683914 -161509750 + L1ME3 LINE L1 4671 4904 -2037 1574 62 31 5 chr1 120683914 120684106 -161509558 - MER107 DNA MER1_type 0 197 1 5568 252 66 39 chr1 120684106 120684180 -161509484 + L1ME3 LINE L1 4904 4975 -1966 549 229 93 0 chr1 120684180 120684298 -161509366 + FLAM_A SINE Alu 1 129 -4 5568 252 66 39 chr1 120684298 120684998 -161508666 + L1ME3 LINE L1 4975 5785 -1156 2136 136 80 14 chr1 120685006 120685358 -161508306 + THE1C LTR MaLR 1 375 0 9567 119 48 5 chr1 120685361 120686871 -161506793 + THE1C-int LTR MaLR 6 1580 0 1870 128 102 9 chr1 120686871 120687214 -161506450 + THE1C LTR MaLR 1 375 0 874 212 109 14 chr1 120687215 120688221 -161505443 + L1ME3 LINE L1 5791 6955 -2 1719 156 81 0 chr1 120688273 120688556 -161505108 + AluSx SINE Alu 1 306 -6 2029 135 0 7 chr1 120689442 120689739 -161503925 + AluSx SINE Alu 1 295 -17 1807 147 4 0 chr1 120690423 120690688 -161502976 + AluSx SINE Alu 39 304 -8 988 98 0 0 chr1 120690784 120690917 -161502747 + AluSq/x SINE Alu 1 133 -179 1197 193 4 21 chr1 120692442 120692675 -161500989 - MER8 DNA MER2_type -10 229 1 759 268 80 4 chr1 120692776 120693015 -161500649 - MIR SINE MIR 0 262 6 26 64 0 0 chr1 120693277 120693324 -161500340 + AT_rich Low_complexity Low_complexity 1 47 0 483 335 87 21 chr1 120693327 120693569 -161500095 + MIR SINE MIR 1 258 -4 228 259 52 0 chr1 120693645 120693703 -161499961 - L2 LINE L2 -190 3082 3022 192 200 0 44 chr1 120693869 120693914 -161499750 - L2 LINE L2 -5 3308 3266 248 250 203 23 chr1 120694463 120694591 -161499073 - MIR SINE MIR 0 262 112 741 236 58 40 chr1 120694610 120694835 -161498829 - MIR SINE MIR -8 254 26 21 71 0 0 chr1 120695214 120695256 -161498408 + AT_rich Low_complexity Low_complexity 1 42 0 312 27 0 0 chr1 120695502 120695539 -161498125 + (TG)n Simple_repeat Simple_repeat 2 38 0 310 360 52 0 chr1 120695552 120695688 -161497976 - L1ME LINE L1 -309 5853 5711 2886 87 72 17 chr1 120695701 120696172 -161497492 + L1MA3 LINE L1 5805 6301 -4 756 109 0 8 chr1 120696705 120696824 -161496840 + FLAM_C SINE Alu 26 143 0 574 234 169 0 chr1 120697125 120697279 -161496385 - MIR SINE MIR -45 217 38 816 191 47 39 chr1 120697279 120697535 -161496129 + L1ME3A LINE L1 5835 6092 -78 3009 135 86 25 chr1 120697558 120698127 -161495537 + MER6A DNA MER2_type 2 605 0 516 123 37 18 chr1 120698845 120699008 -161494656 + (TA)n Simple_repeat Simple_repeat 2 167 0 597 133 0 53 chr1 120699052 120699430 -161494234 + (TA)n Simple_repeat Simple_repeat 1 357 0 578 93 0 67 chr1 120699479 120699672 -161493992 + (TA)n Simple_repeat Simple_repeat 1 180 0 912 67 8 46 chr1 120699689 120700307 -161493357 + (TA)n Simple_repeat Simple_repeat 1 594 0 1795 168 3 19 chr1 120701372 120701681 -161491983 - AluJo SINE Alu -8 304 1 713 271 104 8 chr1 120701681 120701932 -161491732 + MLT1I LTR MaLR 123 397 -12 2160 135 32 115 chr1 120702280 120702748 -161490916 + Tigger2 DNA MER2_type 5 2717 -1 180 286 136 36 chr1 120702911 120703051 -161490613 + L2 LINE L2 530 683 -2631 802 112 86 0 chr1 120703294 120703410 -161490254 + FLAM_C SINE Alu 6 131 -12 423 207 81 0 chr1 120703434 120703545 -161490119 + L1MA6 LINE L1 6174 6293 -7 303 276 75 40 chr1 120703576 120703750 -161489914 + MLT1J LTR MaLR 1 180 -331 1243 156 15 15 chr1 120703805 120704010 -161489654 + AluJo SINE Alu 1 205 -107 2098 140 3 3 chr1 120705535 120705842 -161487822 + AluSx SINE Alu 1 307 -5 1851 127 94 0 chr1 120705843 120706119 -161487545 + AluSg SINE Alu 2 303 -7 5473 105 37 18 chr1 120706427 120707803 -161485861 + L1PA13 LINE L1 4766 6162 -1 2231 97 3 23 chr1 120707808 120708107 -161485557 + AluSp SINE Alu 1 293 -20 23 97 0 0 chr1 120709153 120709225 -161484439 + AT_rich Low_complexity Low_complexity 1 72 0 512 108 12 12 chr1 120709706 120709789 -161483875 - AluSg/x SINE Alu -19 293 211 877 151 180 0 chr1 120709889 120710061 -161483603 + Tigger3(Golem) DNA MER2_type 2826 3028 -1 2113 163 93 25 chr1 120710318 120710758 -161482906 + MLT1D LTR MaLR 1 477 -28 1715 165 174 23 chr1 120710758 120711189 -161482475 + LTR54B LTR ERV1 1 496 -2 2113 163 93 25 chr1 120711189 120711221 -161482443 + MLT1D LTR MaLR 477 505 0 2039 123 0 50 chr1 120711371 120711688 -161481976 - AluSx SINE Alu -7 305 5 180 270 260 0 chr1 120711688 120711788 -161481876 + MIR SINE MIR 120 245 -17 185 298 96 29 chr1 120711810 120711914 -161481750 + MIR SINE MIR 50 160 -102 243 262 49 0 chr1 120712492 120712553 -161481111 - MIR SINE MIR -6 256 193 1734 160 3 14 chr1 120712569 120712878 -161480786 + AluJo SINE Alu 1 306 0 1505 108 10 0 chr1 120712878 120713081 -161480583 - AluSq SINE Alu -108 205 1 485 340 50 30 chr1 120713365 120713665 -161479999 + L2 LINE L2 2859 3164 -149 781 234 43 0 chr1 120713754 120713938 -161479726 - MIR SINE MIR -68 194 3 219 292 15 31 chr1 120713949 120714014 -161479650 + L2 LINE L2 3208 3271 -1 23 0 0 0 chr1 120714193 120714216 -161479448 + AT_rich Low_complexity Low_complexity 1 23 0 1715 148 9 74 chr1 120714417 120714741 -161478923 + AluJo SINE Alu 1 303 -9 2277 109 3 0 chr1 120714761 120715064 -161478600 + AluSc SINE Alu 1 304 -5 258 95 0 0 chr1 120717442 120717484 -161476180 + (TG)n Simple_repeat Simple_repeat 1 42 0 1690 164 3 25 chr1 120717497 120717783 -161475881 - AluJo SINE Alu -30 282 3 23 0 0 0 chr1 120717832 120717855 -161475809 + AT_rich Low_complexity Low_complexity 1 23 0 338 278 0 0 chr1 120718050 120718158 -161475506 + FLAM_C SINE Alu 1 108 -25 1607 163 95 0 chr1 120718281 120718545 -161475119 + AluJb SINE Alu 10 298 -14 2131 140 10 0 chr1 120718611 120718919 -161474745 - AluSx SINE Alu -1 311 1 2312 76 0 3 chr1 120719001 120719290 -161474374 - AluSc SINE Alu -19 290 3 405 278 210 15 chr1 120719427 120719632 -161474032 - MIR SINE MIR -9 253 9 2284 95 0 7 chr1 120720467 120720773 -161472891 - AluSx SINE Alu -8 304 1 608 178 0 0 chr1 120721032 120721139 -161472525 - MER7A DNA MER2_type -241 105 1 393 249 120 67 chr1 120721146 120721168 -161472496 + L1ME2 LINE L1 5868 5887 -447 297 0 0 0 chr1 120721168 120721201 -161472463 + (CA)n Simple_repeat Simple_repeat 2 34 0 393 249 120 67 chr1 120721201 120721463 -161472201 + L1ME2 LINE L1 5887 6331 -3 1736 138 4 0 chr1 120721482 120721729 -161471935 + AluSx SINE Alu 39 286 -26 1506 159 46 32 chr1 120721750 120721869 -161471795 + AluJo SINE Alu 1 117 -195 315 0 0 0 chr1 120721869 120721904 -161471760 + (CA)n Simple_repeat Simple_repeat 2 36 0 1506 159 46 32 chr1 120721904 120722067 -161471597 + AluJo SINE Alu 117 287 -25 200 350 81 31 chr1 120722332 120722492 -161471172 + L2 LINE L2 2825 2992 -280 2268 67 18 3 chr1 120723035 120723319 -161470345 + AluSg SINE Alu 1 288 -22 242 258 30 0 chr1 120723708 120723774 -161469890 + GA-rich Low_complexity Low_complexity 2 69 0 2356 96 3 0 chr1 120723832 120724144 -161469520 + AluSp SINE Alu 1 313 0 603 283 109 5 chr1 120724146 120724330 -161469334 + MIR SINE MIR 49 251 -11 918 71 79 0 chr1 120724738 120724864 -161468800 - MER85 DNA T2_type -3 136 1 233 210 161 0 chr1 120725569 120725631 -161468033 - MER81 DNA DNA -40 74 3 2047 158 0 0 chr1 120725818 120726121 -161467543 - AluSx SINE Alu -9 303 1 22 35 0 0 chr1 120726123 120726152 -161467512 + AT_rich Low_complexity Low_complexity 1 29 0 386 264 123 42 chr1 120726275 120726410 -161467254 - L1ME4a LINE L1 -254 5867 5744 1734 152 91 4 chr1 120726410 120726686 -161466978 - AluJb SINE Alu -12 300 1 386 264 123 42 chr1 120726686 120726811 -161466853 - L1ME4a LINE L1 -377 5744 5586 316 267 60 0 chr1 120726918 120727034 -161466630 - L1ME4a LINE L1 -672 5449 5327 950 272 72 17 chr1 120727222 120727627 -161466037 - L1ME LINE L1 -304 5817 5391 881 226 112 56 chr1 120727900 120728329 -161465335 + LTR16A1 LTR ERVL 5 457 0 338 148 49 0 chr1 120728329 120728390 -161465274 + MIR SINE MIR 133 196 -66 404 178 56 22 chr1 120728393 120728483 -161465181 - MIR SINE MIR 0 262 170 280 234 16 0 chr1 120728505 120728569 -161465095 + MIR SINE MIR 198 262 0 360 200 0 0 chr1 120728739 120728819 -161464845 + (TA)n Simple_repeat Simple_repeat 1 80 0 1989 138 3 0 chr1 120728824 120729113 -161464551 - AluJo SINE Alu -17 295 6 331 224 0 45 chr1 120729503 120729570 -161464094 + L2 LINE L2 3234 3297 -16 252 59 0 0 chr1 120729609 120729643 -161464021 + (TC)n Simple_repeat Simple_repeat 2 35 0 283 216 68 0 chr1 120729674 120729748 -161463916 - L1MC4 LINE L1 -454 7588 7510 1001 275 96 65 chr1 120729749 120729779 -161463885 + L2 LINE L2 2686 2714 -599 2159 116 10 0 chr1 120729779 120730072 -161463592 + AluSq SINE Alu 1 296 -17 704 61 10 0 chr1 120730073 120730171 -161463493 + (TA)n Simple_repeat Simple_repeat 2 100 0 1001 275 96 65 chr1 120730171 120730588 -161463076 + L2 LINE L2 2714 3167 -146 1615 131 58 38 chr1 120730588 120730879 -161462785 - AluJo SINE Alu -5 307 11 1001 275 96 65 chr1 120730879 120731031 -161462633 + L2 LINE L2 3167 3313 0 564 285 111 39 chr1 120731030 120731339 -161462325 - L2 LINE L2 -290 3023 2697 * 189 315 90 27 chr1 120731343 120731454 -161462210 - L2 LINE L2 -865 2449 2332 1364 170 54 33 chr1 120731466 120731742 -161461922 + AluJb SINE Alu 1 282 -30 689 300 53 12 chr1 120731900 120732147 -161461517 - MIR SINE MIR -1 261 5 2194 69 28 3 chr1 120732354 120732644 -161461020 - AluSx SINE Alu -15 297 1 2407 77 3 0 chr1 120733081 120733393 -161460271 - AluSp SINE Alu 0 313 1 26 30 0 0 chr1 120733575 120733608 -161460056 + GC_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr1 120735372 120735416 -161458248 + AT_rich Low_complexity Low_complexity 1 44 0 305 282 188 45 chr1 120735434 120735636 -161458028 - MIR SINE MIR -9 253 23 2034 81 66 0 chr1 120736244 120736515 -161457149 + AluSg SINE Alu 1 289 -21 191 306 110 63 chr1 120736545 120736800 -161456864 + L2 LINE L2 2804 3070 -202 1926 114 53 0 chr1 120737004 120737285 -161456379 + AluSx SINE Alu 1 296 -16 185 216 0 59 chr1 120737997 120738048 -161455616 + L3 LINE CR1 1508 1555 -22 1827 167 3 0 chr1 120738643 120738937 -161454727 - AluJo SINE Alu -12 300 6 2235 130 9 0 chr1 120738965 120739296 -161454368 + MER2 DNA MER2_type 11 344 -1 976 167 48 0 chr1 120739618 120739786 -161453878 + FAM SINE Alu 1 45 -4 453 275 114 6 chr1 120740021 120740188 -161453476 + L3 LINE CR1 1242 1426 -151 234 283 0 0 chr1 120740216 120740269 -161453395 + L3 LINE CR1 1524 1576 -1 242 288 14 7 chr1 120740414 120740560 -161453104 - L1MEd LINE L1 -4927 1192 1046 207 0 0 0 chr1 120740588 120740611 -161453053 + (TTG)n Simple_repeat Simple_repeat 2 24 0 528 148 0 0 chr1 120740622 120740703 -161452961 - AluSg/x SINE Alu -31 278 198 1702 117 4 0 chr1 120740703 120740933 -161452731 - AluSx SINE Alu -81 231 1 370 164 0 0 chr1 120740976 120741043 -161452621 - Alu SINE Alu 0 302 236 381 198 185 32 chr1 120741043 120741200 -161452464 + L1ME3A LINE L1 5701 5881 -289 24 0 0 0 chr1 120742171 120742195 -161451469 + AT_rich Low_complexity Low_complexity 1 24 0 316 211 56 11 chr1 120742655 120742745 -161450919 - L1M4c LINE L1 -4095 2289 2196 799 167 0 8 chr1 120742753 120742885 -161450779 - FLAM_A SINE Alu -2 131 1 22 35 0 0 chr1 120742957 120742986 -161450678 + AT_rich Low_complexity Low_complexity 1 29 0 2118 126 7 3 chr1 120743570 120743879 -161449785 - AluSx SINE Alu -2 310 1 286 244 35 12 chr1 120743880 120743966 -161449698 - Charlie8 DNA MER1_type -2276 141 54 2249 111 0 7 chr1 120744737 120745043 -161448621 - AluSx SINE Alu -8 304 1 1674 170 36 7 chr1 120745055 120745331 -161448333 - AluJb SINE Alu -28 284 1 399 349 159 20 chr1 120745625 120745768 -161447896 + L2 LINE L2 2422 2544 -728 4658 64 3 2 chr1 120745768 120746358 -161447306 - LTR10C LTR ERV1 0 591 1 399 349 159 20 chr1 120746358 120746798 -161446866 + L2 LINE L2 2544 3080 -192 571 245 27 50 chr1 120747596 120747857 -161445807 + L1MC5 LINE L1 7643 7897 -64 295 278 96 56 chr1 120748036 120748185 -161445479 + MIR SINE MIR 7 167 -95 1782 138 3 35 chr1 120748185 120748496 -161445168 - AluJo SINE Alu -11 301 1 295 278 96 56 chr1 120748496 120748544 -161445120 + MIR SINE MIR 167 212 -50 339 267 121 24 chr1 120750095 120750260 -161443404 - L1MC/D LINE L1 -2006 5802 5622 21 82 0 0 chr1 120750320 120750369 -161443295 + AT_rich Low_complexity Low_complexity 1 49 0 2173 96 39 0 chr1 120750466 120750748 -161442916 + AluSx SINE Alu 3 295 -17 1984 155 0 0 chr1 120751107 120751398 -161442266 + AluSx SINE Alu 1 291 -21 420 239 164 44 chr1 120751773 120751932 -161441732 - MER5B DNA MER1_type 0 178 1 249 291 0 0 chr1 120752015 120752070 -161441594 - MER113 DNA MER1_type? 0 521 467 2522 139 177 0 chr1 120752120 120752566 -161441098 + MER1A DNA MER1_type 3 527 0 25 65 0 0 chr1 120754373 120754419 -161439245 + AT_rich Low_complexity Low_complexity 1 46 0 405 226 145 8 chr1 120755786 120755910 -161437754 + MIR SINE MIR 112 252 -10 23 33 0 0 chr1 120756665 120756695 -161436969 + AT_rich Low_complexity Low_complexity 1 30 0 2311 102 3 0 chr1 120756925 120757230 -161436434 - AluSq SINE Alu -7 306 1 519 259 120 23 chr1 120757360 120757576 -161436088 + MARNA DNA Mariner 329 565 -21 918 232 112 13 chr1 120757688 120757921 -161435743 - MIR SINE MIR 0 262 7 1663 70 0 0 chr1 120758889 120759089 -161434575 + AluSc SINE Alu 98 297 -12 762 246 21 5 chr1 120759109 120759296 -161434368 - Charlie8 DNA MER1_type -2153 264 75 488 281 65 7 chr1 120759376 120759515 -161434149 + L3 LINE CR1 1356 1502 -75 661 243 128 43 chr1 120760210 120760445 -161433219 + MIR SINE MIR 7 261 -1 205 149 75 0 chr1 120761091 120761158 -161432506 + (TA)n Simple_repeat Simple_repeat 1 72 0 1490 234 83 174 chr1 120761925 120762435 -161431229 + L2 LINE L2 1687 2242 -1072 974 180 50 5 chr1 120762435 120762635 -161431029 + MER3 DNA MER1_type 1 209 0 1490 234 83 174 chr1 120762635 120762919 -161430745 + L2 LINE L2 2242 2550 -764 529 193 0 0 chr1 120762919 120763039 -161430625 - FLAM_A SINE Alu 0 149 30 1490 234 83 174 chr1 120763039 120763286 -161430378 + L2 LINE L2 2550 2818 -496 1567 115 0 5 chr1 120763286 120763503 -161430161 + AluSx SINE Alu 1 216 -96 711 207 71 0 chr1 120763504 120763644 -161430020 - FRAM SINE Alu -16 150 1 1490 234 83 174 chr1 120763644 120763815 -161429849 + L2 LINE L2 2817 2872 -442 213 232 0 54 chr1 120763815 120763871 -161429793 + L2 LINE L2 3202 3254 -59 661 310 150 25 chr1 120763901 120764308 -161429356 + L1MEd LINE L1 420 877 -5242 1076 225 26 0 chr1 120764333 120764564 -161429100 - MIR SINE MIR 0 262 26 2496 66 0 0 chr1 120764781 120765086 -161428578 + AluY SINE Alu 1 305 -6 2179 55 48 0 chr1 120765093 120765365 -161428299 + AluY SINE Alu 1 285 -26 519 120 157 9 chr1 120765430 120765538 -161428126 + FLAM_C SINE Alu 2 125 -8 1347 191 26 26 chr1 120765550 120765823 -161427841 + AluJo SINE Alu 3 275 -37 243 270 131 35 chr1 120766033 120766314 -161427350 + L1MEd LINE L1 2717 3048 -3081 2394 92 0 0 chr1 120766314 120766619 -161427045 + AluSc SINE Alu 1 305 -4 243 270 131 35 chr1 120766619 120766733 -161426931 + L1MEd LINE L1 3048 3150 -2979 725 266 102 42 chr1 120766819 120767274 -161426390 + L1MEd LINE L1 3317 3808 -2321 2403 71 0 0 chr1 120767274 120767568 -161426096 + AluSg SINE Alu 1 294 -16 725 266 102 42 chr1 120767568 120767634 -161426030 + L1MEd LINE L1 3808 3869 -2260 623 256 66 4 chr1 120767708 120767935 -161425729 + L1ME2 LINE L1 2136 2376 -3753 2044 122 7 0 chr1 120767937 120768231 -161425433 + AluSq SINE Alu 1 296 -17 349 251 78 66 chr1 120768294 120768461 -161425203 + L1ME2 LINE L1 2388 2556 -3573 * 384 225 172 30 chr1 120768457 120768491 -161425173 + L1ME2 LINE L1 4486 4514 -1615 1843 168 3 7 chr1 120768491 120768800 -161424864 - AluJb SINE Alu -4 308 1 384 225 172 30 chr1 120768800 120769067 -161424597 + L1ME2 LINE L1 4514 4830 -1299 1663 148 18 18 chr1 120769159 120769443 -161424221 + AluJo SINE Alu 6 289 -23 900 113 8 15 chr1 120769456 120769589 -161424075 + AluSq/x SINE Alu 1 132 -180 568 259 83 104 chr1 120769631 120770240 -161423424 + L1ME2 LINE L1 5344 5922 -225 29 60 0 0 chr1 120771137 120771187 -161422477 + AT_rich Low_complexity Low_complexity 1 50 0 2106 67 4 0 chr1 120771783 120772037 -161421627 + AluSc SINE Alu 1 255 -54 1852 136 0 65 chr1 120772315 120772638 -161421026 + AluJb SINE Alu 1 302 -10 704 169 55 80 chr1 120773239 120773440 -161420224 - HAL1 LINE L1 -813 1694 1499 2474 50 0 14 chr1 120773645 120773942 -161419722 + AluSc SINE Alu 1 293 -16 208 175 0 25 chr1 120773952 120773984 -161419680 + (CATATA)n Simple_repeat Simple_repeat 3 35 -6 604 211 0 49 chr1 120773984 120774107 -161419557 - FLAM_A SINE Alu -16 117 1 208 175 0 25 chr1 120774107 120774114 -161419550 + (CATATA)n Simple_repeat Simple_repeat 35 41 0 331 223 232 0 chr1 120774149 120774261 -161419403 + L1ME2 LINE L1 5997 6134 -13 33 56 0 0 chr1 120774508 120774562 -161419102 + AT_rich Low_complexity Low_complexity 1 54 0 2292 112 0 0 chr1 120775322 120775627 -161418037 - AluSx SINE Alu -7 305 1 514 158 12 12 chr1 120775861 120775943 -161417721 + AluJb SINE Alu 87 168 -134 653 144 0 0 chr1 120775943 120776040 -161417624 + AluSg/x SINE Alu 199 295 -14 22 35 0 0 chr1 120776056 120776085 -161417579 + AT_rich Low_complexity Low_complexity 1 29 0 1967 163 0 3 chr1 120776204 120776504 -161417160 + AluSx SINE Alu 2 300 -12 2284 115 0 0 chr1 120776506 120776810 -161416854 + AluSx SINE Alu 1 304 -8 212 277 194 40 chr1 120777288 120777486 -161416178 + L2 LINE L2 2329 2584 -730 1888 125 11 0 chr1 120777486 120777750 -161415914 + AluSx SINE Alu 30 296 -16 212 277 194 40 chr1 120777750 120777829 -161415835 + L2 LINE L2 2584 2649 -665 24 53 0 0 chr1 120778156 120778194 -161415470 + AT_rich Low_complexity Low_complexity 1 38 0 1100 167 0 0 chr1 120779167 120779341 -161414323 + FAM SINE Alu 1 174 -1 1645 171 10 20 chr1 120779360 120779652 -161414012 - AluJo SINE Alu -23 289 1 180 97 0 0 chr1 120780258 120780289 -161413375 + (T)n Simple_repeat Simple_repeat 1 31 0 2660 277 187 44 chr1 120780651 120781841 -161411823 - L2 LINE L2 -6 3307 2290 192 111 0 0 chr1 120781841 120781877 -161411787 + (GGGTG)n Simple_repeat Simple_repeat 5 40 0 2660 277 187 44 chr1 120781877 120782690 -161410974 - L2 LINE L2 -1023 2290 1001 5301 222 104 15 chr1 120782690 120784014 -161409650 + L1 LINE L1 3609 5103 -1043 1800 153 35 11 chr1 120784014 120784301 -161409363 + AluJo SINE Alu 9 302 -10 5301 222 104 15 chr1 120784301 120784587 -161409077 + L1 LINE L1 5103 5362 -784 299 263 129 85 chr1 120784589 120784813 -161408851 - L2 LINE L2 -2503 811 578 2138 111 3 3 chr1 120785038 120785326 -161408338 + AluSx SINE Alu 14 301 -11 787 209 27 32 chr1 120785367 120785554 -161408110 - MER58A DNA MER1_type 0 224 39 1796 140 25 14 chr1 120786794 120786925 -161406739 + AluJo SINE Alu 1 129 -183 2324 97 0 7 chr1 120786925 120787223 -161406441 + AluSx SINE Alu 1 296 -16 1796 140 25 14 chr1 120787223 120787377 -161406287 + AluJo SINE Alu 129 289 -23 21 0 0 0 chr1 120787404 120787425 -161406239 + AT_rich Low_complexity Low_complexity 1 21 0 181 208 94 19 chr1 120787815 120787868 -161405796 + MER5A DNA MER1_type 109 165 -24 2095 112 18 3 chr1 120788309 120788595 -161405069 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr1 120788841 120788867 -161404797 + AT_rich Low_complexity Low_complexity 1 26 0 1308 175 192 0 chr1 120789226 120789466 -161404198 - AluJo SINE Alu -16 286 1 435 233 0 0 chr1 120789538 120789611 -161404053 - AluJ/FLAM SINE Alu -238 74 2 666 250 206 42 chr1 120791410 120791654 -161402010 - L2 LINE L2 -4 3309 3106 1670 178 24 7 chr1 120791654 120791946 -161401718 + AluJo SINE Alu 1 297 -15 666 250 206 42 chr1 120791946 120792213 -161401451 - L2 LINE L2 -207 3106 2720 2159 110 7 13 chr1 120792257 120792565 -161401099 - AluSx SINE Alu -6 306 1 744 204 96 48 chr1 120794072 120794302 -161399362 + Charlie1 DNA MER1_type 1 241 -2520 534 211 75 0 chr1 120794282 120794415 -161399249 + Charlie1 DNA MER1_type 2619 2761 0 * 555 119 24 0 chr1 120795353 120795479 -161398185 + (TA)n Simple_repeat Simple_repeat 1 129 0 2579 37 0 10 chr1 120795480 120795779 -161397885 - AluY SINE Alu -15 296 1 1183 118 57 24 chr1 120796595 120796806 -161396858 + L1MD2 LINE L1 6140 6357 -2 198 261 261 36 chr1 120797241 120797352 -161396312 - L2 LINE L2 0 3272 3137 31 26 0 0 chr1 120797782 120797820 -161395844 + AT_rich Low_complexity Low_complexity 1 38 0 2212 89 0 0 chr1 120797823 120798103 -161395561 - AluSx SINE Alu -11 301 22 1007 106 24 71 chr1 120798231 120798401 -161395263 + AluSg/x SINE Alu 114 275 -37 189 74 0 0 chr1 120798405 120798432 -161395232 + (CAA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr1 120798974 120798997 -161394667 + AT_rich Low_complexity Low_complexity 1 23 0 2067 132 30 0 chr1 120799075 120799378 -161394286 - AluSx SINE Alu 0 312 1 1596 188 7 3 chr1 120800360 120800652 -161393012 + AluJo SINE Alu 3 295 -17 2417 72 0 0 chr1 120800806 120801099 -161392565 - AluY SINE Alu -18 293 1 1779 173 14 52 chr1 120801100 120801469 -161392195 + MER82 DNA MER2_type 19 373 -280 972 259 57 19 chr1 120801528 120801791 -161391873 + MER82 DNA MER2_type 381 653 0 1081 105 0 14 chr1 120802055 120802198 -161391466 + AluSq/x SINE Alu 5 145 -167 2513 61 0 3 chr1 120802198 120802495 -161391169 + AluY SINE Alu 1 296 -15 2152 118 3 3 chr1 120803052 120803349 -161390315 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 120803713 120803744 -161389920 + AT_rich Low_complexity Low_complexity 1 31 0 232 339 83 8 chr1 120805632 120805753 -161387911 - L2 LINE L2 0 3313 3184 28 29 0 0 chr1 120805950 120805985 -161387679 + AT_rich Low_complexity Low_complexity 1 35 0 33 43 0 0 chr1 120806626 120806673 -161386991 + AT_rich Low_complexity Low_complexity 1 47 0 1687 149 47 22 chr1 120806683 120806985 -161386679 - AluJo SINE Alu 0 309 1 2961 159 21 43 chr1 120807147 120807295 -161386369 + L1MB8 LINE L1 5611 5761 -417 1354 166 99 14 chr1 120807295 120807578 -161386086 + AluSx SINE Alu 1 307 -5 2961 159 21 43 chr1 120807578 120807937 -161385727 + L1MB8 LINE L1 5761 6106 -72 1895 123 13 48 chr1 120807937 120808246 -161385418 - AluJb SINE Alu -12 300 3 2961 159 21 43 chr1 120808246 120808317 -161385347 + L1MB8 LINE L1 6106 6177 -1 2032 111 31 3 chr1 120808352 120808641 -161385023 - AluSp SINE Alu -16 297 1 2190 121 0 3 chr1 120808688 120808994 -161384670 + AluSx SINE Alu 2 306 -6 990 125 0 50 chr1 120809124 120809284 -161384380 - MER3 DNA MER1_type -53 156 5 184 370 22 87 chr1 120809394 120809497 -161384167 + L2 LINE L2 3058 3151 -121 1041 191 11 11 chr1 120809497 120809675 -161383989 + MER5B DNA MER1_type 1 178 0 184 370 22 87 chr1 120809675 120809709 -161383955 + L2 LINE L2 3151 3186 -86 303 277 0 48 chr1 120809743 120809826 -161383838 + L2 LINE L2 3184 3262 -10 2334 97 3 0 chr1 120809899 120810199 -161383465 + AluSp SINE Alu 1 301 -12 1707 116 3 49 chr1 120810391 120810675 -161382989 + AluSg SINE Alu 15 285 -25 439 224 41 110 chr1 120810933 120810985 -161382679 - L2 LINE L2 0 3313 3259 357 24 0 0 chr1 120810985 120811027 -161382637 + (TG)n Simple_repeat Simple_repeat 1 42 0 2017 103 3 45 chr1 120811027 120811318 -161382346 - AluSp SINE Alu -33 280 2 439 224 41 110 chr1 120811318 120811510 -161382154 - L2 LINE L2 -52 3261 3085 508 281 49 22 chr1 120811530 120811715 -161381949 + MLT1H1 LTR MaLR 7 196 -359 2759 181 39 19 chr1 120811715 120812250 -161381414 + MLT2B3 LTR ERVL 1 546 -8 543 235 139 61 chr1 120812262 120812554 -161381110 + MLT1H1 LTR MaLR 184 508 -47 2375 81 0 0 chr1 120812554 120812849 -161380815 + AluY SINE Alu 1 295 -16 543 235 139 61 chr1 120812849 120812901 -161380763 + MLT1H1 LTR MaLR 508 555 0 936 280 62 42 chr1 120812937 120813387 -161380277 - L2 LINE L2 -341 2973 2515 639 258 42 37 chr1 120813393 120813583 -161380081 + MLT1J1 LTR MaLR 3 193 -253 1150 276 167 10 chr1 120813800 120814322 -161379342 - L2 LINE L2 -798 2516 1913 2208 183 84 0 chr1 120814410 120814804 -161378860 + Tigger7 DNA MER2_type 1 427 -306 2106 116 3 3 chr1 120814804 120815096 -161378568 + AluSx SINE Alu 1 292 -20 2214 88 3 3 chr1 120815098 120815403 -161378261 + AluSp SINE Alu 1 305 0 1028 180 0 11 chr1 120815407 120815590 -161378074 + AluSg/x SINE Alu 130 310 -2 831 158 8 0 chr1 120815592 120815725 -161377939 + Tigger7 DNA MER2_type 439 572 -161 * 1212 146 23 14 chr1 120815712 120815932 -161377732 + Tigger7 DNA MER2_type 2262 2483 -4 557 135 10 10 chr1 120815956 120816052 -161377612 + L1MEc LINE L1 37 132 -6264 1856 152 0 19 chr1 120816054 120816369 -161377295 + AluJb SINE Alu 1 309 -3 835 111 15 52 chr1 120817059 120817194 -161376470 - FLAM_C SINE Alu -8 135 6 352 232 246 7 chr1 120817453 120817591 -161376073 - MER5A DNA MER1_type -10 179 9 24 32 0 0 chr1 120817744 120817775 -161375889 + AT_rich Low_complexity Low_complexity 1 31 0 2266 85 3 0 chr1 120817784 120818077 -161375587 + AluSp SINE Alu 1 294 -19 454 176 266 58 chr1 120818078 120818266 -161375398 - MIR SINE MIR -5 257 31 293 257 54 0 chr1 120818627 120818701 -161374963 - MER5A DNA MER1_type -110 79 2 1842 147 0 7 chr1 120818793 120819093 -161374571 + AluSx SINE Alu 1 298 -14 2218 91 7 17 chr1 120819953 120820251 -161373413 - AluSx SINE Alu -17 295 1 4246 123 58 68 chr1 120820408 120820984 -161372680 - L1MB3 LINE L1 -31 6152 5585 2308 92 7 0 chr1 120820984 120821277 -161372387 - AluSq SINE Alu -17 296 2 4246 123 58 68 chr1 120821277 120821538 -161372126 - L1MB3 LINE L1 -598 5585 5323 209 33 33 0 chr1 120821538 120821568 -161372096 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 598 117 0 0 chr1 120821570 120821647 -161372017 - FRAM SINE Alu -30 146 70 496 70 180 10 chr1 120821647 120821747 -161371917 - L1MB3 LINE L1 -815 5331 5215 998 129 0 0 chr1 120821748 120821887 -161371777 - FLAM_C SINE Alu -4 139 1 565 118 0 0 chr1 120821946 120822031 -161371633 + MER4B LTR ERV1 1 85 -525 1978 135 17 10 chr1 120822031 120822328 -161371336 + AluSx SINE Alu 1 299 -13 256 91 159 0 chr1 120822328 120822372 -161371292 + MER4D LTR ERV1 187 237 -635 1545 110 22 13 chr1 120822396 120822624 -161371040 + MER4E LTR ERV1 550 779 0 1229 174 26 26 chr1 120822666 120822896 -161370768 + AluJo SINE Alu 1 230 -82 369 0 0 0 chr1 120822974 120823015 -161370649 + (CA)n Simple_repeat Simple_repeat 2 42 0 1967 108 3 34 chr1 120823279 120823472 -161370192 - AluSx SINE Alu -26 286 104 5870 71 30 3 chr1 120823472 120824218 -161369446 - MER4E LTR ERV1 0 766 1 1967 108 3 34 chr1 120824218 120824319 -161369345 - AluSx SINE Alu -208 104 1 2279 90 3 7 chr1 120824560 120824860 -161368804 + AluSq SINE Alu 1 299 -14 4066 109 33 71 chr1 120824979 120825133 -161368531 + LTR8 LTR ERV1 12 170 -521 2233 89 27 7 chr1 120825133 120825425 -161368239 + AluSx SINE Alu 1 298 -14 4066 109 33 71 chr1 120825425 120825976 -161367688 + LTR8 LTR ERV1 170 690 -1 702 215 25 0 chr1 120826117 120826238 -161367426 + FLAM_C SINE Alu 1 124 -9 2076 285 138 15 chr1 120827963 120828697 -161364967 + L2 LINE L2 1954 2597 -716 828 149 52 26 chr1 120828697 120828851 -161364813 + L1MC1 LINE L1 6176 6333 0 2076 285 138 15 chr1 120828851 120828862 -161364802 + L2 LINE L2 2597 2605 -708 2387 69 3 20 chr1 120828862 120829167 -161364497 + AluY SINE Alu 1 300 -11 2076 285 138 15 chr1 120829167 120829420 -161364244 + L2 LINE L2 2605 3085 -228 532 117 13 0 chr1 120829420 120829497 -161364167 + AluS SINE Alu 221 298 -14 277 269 212 0 chr1 120829505 120829698 -161363966 + L2 LINE L2 3077 3310 -3 1433 178 4 8 chr1 120829845 120830103 -161363561 + AluJo SINE Alu 44 300 -12 1795 174 0 3 chr1 120830113 120830407 -161363257 + AluJo SINE Alu 1 293 -19 991 113 0 0 chr1 120830409 120830542 -161363122 + FLAM_C SINE Alu 1 133 0 241 125 0 25 chr1 120831438 120831478 -161362186 + LTR23 LTR ERV1 320 358 -79 202 159 48 16 chr1 120831479 120831542 -161362122 + (TTAA)n Simple_repeat Simple_repeat 2 66 0 2282 92 3 0 chr1 120831546 120831841 -161361823 + AluSg SINE Alu 1 296 -14 241 47 0 47 chr1 120831850 120831893 -161361771 + Alu SINE Alu 262 302 0 189 351 81 59 chr1 120832144 120832415 -161361249 - L2 LINE L2 -415 2899 2623 671 316 152 32 chr1 120832679 120833338 -161360326 - L2 LINE L2 0 3313 2565 2364 90 0 7 chr1 120833358 120833658 -161360006 - AluSx SINE Alu -14 298 1 1770 113 106 0 chr1 120833774 120834039 -161359625 + AluSx SINE Alu 1 293 -19 1086 134 6 17 chr1 120834041 120834213 -161359451 + AluSq SINE Alu 136 305 -8 22 0 0 0 chr1 120834380 120834402 -161359262 + AT_rich Low_complexity Low_complexity 1 22 0 2471 47 0 41 chr1 120834402 120834720 -161358944 + AluY SINE Alu 1 305 -6 721 309 151 43 chr1 120834723 120835332 -161358332 - L2 LINE L2 -1031 2283 1609 287 232 316 7 chr1 120835393 120835434 -161358230 + HAL1 LINE L1 1980 2007 -500 186 43 0 0 chr1 120835434 120835457 -161358207 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 287 232 316 7 chr1 120835457 120835570 -161358094 + HAL1 LINE L1 2007 2182 -325 821 201 7 0 chr1 120835588 120835770 -161357894 + AluJb SINE Alu 137 319 0 242 179 54 80 chr1 120835794 120835906 -161357758 + HAL1 LINE L1 2212 2320 -187 * 374 223 19 29 chr1 120835905 120836008 -161357656 - HAL1 LINE L1 -275 2232 2131 2182 149 15 32 chr1 120836061 120836404 -161357260 + MER1B DNA MER1_type 1 337 0 2161 135 0 0 chr1 120836655 120836959 -161356705 + AluSx SINE Alu 1 304 -8 2274 98 0 3 chr1 120837054 120837350 -161356314 + AluY SINE Alu 1 295 -16 258 81 0 0 chr1 120837445 120837482 -161356182 + (TG)n Simple_repeat Simple_repeat 2 38 0 1109 141 0 0 chr1 120838149 120838312 -161355352 + FRAM SINE Alu 1 162 -14 21 0 0 0 chr1 120838405 120838426 -161355238 + AT_rich Low_complexity Low_complexity 1 21 0 1720 172 19 19 chr1 120838459 120838767 -161354897 + AluJo SINE Alu 1 308 -4 307 281 156 7 chr1 120840541 120840676 -161352988 + L1MC4 LINE L1 7799 7953 -89 2257 104 0 10 chr1 120840804 120841111 -161352553 + AluSc SINE Alu 1 304 -5 538 317 172 26 chr1 120841142 120841858 -161351806 + L2 LINE L2 2476 3313 0 648 165 9 0 chr1 120842312 120842427 -161351237 + Tigger7 DNA MER2_type 2375 2490 -1 31 26 0 0 chr1 120843506 120843544 -161350120 + AT_rich Low_complexity Low_complexity 1 38 0 841 124 0 0 chr1 120843544 120843657 -161350007 - FLAM_C SINE Alu -25 118 6 2132 125 0 0 chr1 120843666 120843974 -161349690 - AluSx SINE Alu 0 310 3 1355 171 0 38 chr1 120844162 120844402 -161349262 + AluJb SINE Alu 1 231 -81 1348 133 0 60 chr1 120844681 120844914 -161348750 + AluJb SINE Alu 86 304 -8 2223 116 3 0 chr1 120844973 120845265 -161348399 - AluSx SINE Alu -19 293 1 387 123 26 88 chr1 120845881 120845912 -161347752 + Charlie8 DNA MER1_type 40 71 -2346 2198 113 3 3 chr1 120845912 120846203 -161347461 - AluSq SINE Alu -22 291 1 387 123 26 88 chr1 120846203 120846285 -161347379 + Charlie8 DNA MER1_type 71 146 -2271 688 195 0 0 chr1 120846288 120846406 -161347258 + FLAM_C SINE Alu 1 118 -25 2127 128 0 0 chr1 120846428 120846717 -161346947 - AluSx SINE Alu -23 289 1 740 198 80 19 chr1 120847210 120847372 -161346292 - FAM SINE Alu -3 172 1 439 313 41 57 chr1 120847656 120848023 -161345641 + HAL1 LINE L1 450 810 -1697 30 0 0 0 chr1 120848023 120848053 -161345611 + AT_rich Low_complexity Low_complexity 1 30 0 875 110 0 0 chr1 120848053 120848171 -161345493 - FLAM_C SINE Alu -25 118 1 446 252 80 40 chr1 120848179 120848453 -161345211 + HAL1 LINE L1 808 1092 -1415 479 228 74 69 chr1 120849136 120849325 -161344339 + HAL1 LINE L1 1301 1490 -1017 1380 156 0 5 chr1 120849335 120849547 -161344117 + AluSg/x SINE Alu 83 293 -17 1524 230 137 85 chr1 120849551 120850324 -161343340 + HAL1 LINE L1 1480 2211 -296 2238 107 7 3 chr1 120850324 120850623 -161343041 + AluSq SINE Alu 1 300 -13 1524 230 137 85 chr1 120850623 120850670 -161342994 + HAL1 LINE L1 2211 2254 -253 879 136 8 0 chr1 120850670 120850795 -161342869 + FLAM_C SINE Alu 1 126 -7 1524 230 137 85 chr1 120850795 120850950 -161342714 + HAL1 LINE L1 2254 2507 0 1571 174 50 4 chr1 120852281 120852562 -161341102 - AluJo SINE Alu -18 294 1 235 279 27 72 chr1 120852830 120852941 -161340723 - L2 LINE L2 0 3313 3208 2289 104 7 0 chr1 120853044 120853341 -161340323 + AluSx SINE Alu 1 299 -13 1521 168 51 60 chr1 120853352 120853667 -161339997 + AluJo SINE Alu 1 312 0 198 172 0 47 chr1 120853667 120853683 -161339981 + GA-rich Low_complexity Low_complexity 1 16 -45 2580 51 0 13 chr1 120853683 120853994 -161339670 + AluY SINE Alu 1 307 -4 198 172 0 47 chr1 120853994 120854041 -161339623 + GA-rich Low_complexity Low_complexity 16 61 0 2023 148 3 0 chr1 120854431 120854729 -161338935 + AluSx SINE Alu 1 299 -13 2158 86 4 7 chr1 120855174 120855453 -161338211 + AluSq SINE Alu 21 298 -15 1240 175 135 40 chr1 120855632 120855906 -161337758 + AluSg SINE Alu 1 300 -10 1190 183 15 123 chr1 120856275 120856439 -161337225 + AluJb SINE Alu 2 113 -189 2287 103 0 0 chr1 120856439 120856740 -161336924 + AluSg SINE Alu 1 301 -9 1190 183 15 123 chr1 120856740 120856909 -161336755 + AluJb SINE Alu 113 299 -3 447 187 22 11 chr1 120857079 120857170 -161336494 - MIR SINE MIR -1 261 170 25 0 0 0 chr1 120857175 120857200 -161336464 + AT_rich Low_complexity Low_complexity 1 25 0 231 153 17 17 chr1 120857215 120857223 -161336441 + (TAAA)n Simple_repeat Simple_repeat 4 11 -51 1890 146 25 4 chr1 120857223 120857504 -161336160 + AluSx SINE Alu 1 287 -25 231 153 17 17 chr1 120857504 120857554 -161336110 + (TAAA)n Simple_repeat Simple_repeat 10 62 0 23 0 0 0 chr1 120857621 120857644 -161336020 + AT_rich Low_complexity Low_complexity 1 23 0 393 245 49 10 chr1 120857693 120857795 -161335869 - MIR SINE MIR 0 262 157 1837 153 7 10 chr1 120857819 120858114 -161335550 + AluJb SINE Alu 1 294 -18 1768 103 38 14 chr1 120858984 120859275 -161334389 + L1P5 LINE L1 5426 5723 -431 1197 202 23 0 chr1 120859296 120859558 -161334106 - L1M4 LINE L1 -3435 2711 2444 22 0 0 0 chr1 120859587 120859609 -161334055 + AT_rich Low_complexity Low_complexity 1 22 0 2059 125 0 10 chr1 120859719 120860015 -161333649 - AluSx SINE Alu -19 293 1 1559 163 45 17 chr1 120860193 120860313 -161333351 + AluSc SINE Alu 1 116 -193 216 0 0 0 chr1 120860313 120860337 -161333327 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1559 163 45 17 chr1 120860337 120860504 -161333160 + AluSc SINE Alu 116 296 -13 2192 108 13 0 chr1 120860667 120860972 -161332692 + AluSc SINE Alu 1 309 0 226 208 0 0 chr1 120860979 120861027 -161332637 + MIR SINE MIR 79 126 -136 2181 90 10 0 chr1 120861187 120861477 -161332187 + AluSp SINE Alu 1 293 -20 463 283 90 6 chr1 120861648 120861814 -161331850 - MIR SINE MIR -59 203 24 1524 155 4 16 chr1 120862017 120862269 -161331395 - AluJb SINE Alu -20 292 44 782 150 0 0 chr1 120862414 120862527 -161331137 - FLAM_C SINE Alu -25 118 6 25 51 0 0 chr1 120862533 120862572 -161331092 + AT_rich Low_complexity Low_complexity 1 39 0 561 261 23 23 chr1 120862771 120862893 -161330771 - MIR SINE MIR -117 145 21 2416 83 0 0 chr1 120862893 120863193 -161330471 + AluSg SINE Alu 1 300 -10 2017 110 34 20 chr1 120863342 120863634 -161330030 - AluSx SINE Alu -16 296 1 2241 105 0 0 chr1 120863691 120863977 -161329687 - AluSx SINE Alu -24 288 3 1378 96 5 15 chr1 120863985 120864182 -161329482 + AluSc SINE Alu 112 306 -3 393 245 113 38 chr1 120864547 120864787 -161328877 + L1ME4a LINE L1 5693 5956 -165 2430 85 3 0 chr1 120864787 120865094 -161328570 + AluSq SINE Alu 1 308 -5 393 245 113 38 chr1 120865094 120865118 -161328546 + L1ME4a LINE L1 5956 5977 -144 253 183 0 0 chr1 120865168 120865228 -161328436 + L1ME4a LINE L1 6062 6121 0 22 35 0 0 chr1 120865249 120865278 -161328386 + AT_rich Low_complexity Low_complexity 1 29 0 1336 146 158 20 chr1 120865347 120865600 -161328064 + AluJb SINE Alu 3 290 -12 2508 76 0 0 chr1 120865649 120865952 -161327712 - AluY SINE Alu -8 303 1 753 221 47 0 chr1 120867033 120867182 -161326482 - FAM SINE Alu -19 156 1 2204 103 23 3 chr1 120867369 120867669 -161325995 + AluSg SINE Alu 1 306 -4 459 324 75 6 chr1 120867773 120867946 -161325718 - MIR3 SINE MIR -8 200 16 1910 181 6 8 chr1 120868020 120868379 -161325285 + MLT1A1 LTR MaLR 8 365 0 308 145 79 0 chr1 120869315 120869391 -161324273 - L1MA7 LINE L1 -12 6279 6198 1853 174 7 13 chr1 120869497 120869807 -161323857 - AluJo SINE Alu -4 308 1 2196 94 0 14 chr1 120870413 120870701 -161322963 - AluSx SINE Alu -28 284 1 598 273 68 6 chr1 120871050 120871226 -161322438 + MIR SINE MIR 72 258 -4 29 60 0 0 chr1 120871300 120871350 -161322314 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr1 120873299 120873325 -161320339 + AT_rich Low_complexity Low_complexity 1 26 0 623 332 92 0 chr1 120873528 120873778 -161319886 - L2 LINE L2 -2472 842 570 290 263 11 0 chr1 120873780 120873875 -161319789 - L1ME4a LINE L1 -216 5905 5810 405 209 38 19 chr1 120874036 120874141 -161319523 - L1ME4a LINE L1 -512 5609 5503 180 200 0 0 chr1 120874592 120874637 -161319027 + (CATA)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr1 120875123 120875158 -161318506 + AT_rich Low_complexity Low_complexity 1 35 0 572 205 187 18 chr1 120875360 120875531 -161318133 - MIR SINE MIR -57 205 6 1913 192 0 3 chr1 120876310 120876618 -161317046 - AluJb SINE Alu -5 307 1 364 224 109 7 chr1 120876976 120877123 -161316541 - MER103 DNA DNA -2 164 3 180 194 28 0 chr1 120877250 120877286 -161316378 + MER5B DNA MER1_type 2 38 -140 2059 146 0 10 chr1 120877446 120877748 -161315916 + AluJb SINE Alu 1 299 -13 231 216 91 57 chr1 120877905 120877993 -161315671 + MIR SINE MIR 117 207 -55 808 284 45 5 chr1 120878993 120879215 -161314449 - MIR SINE MIR 0 262 32 1142 117 49 29 chr1 120879223 120879428 -161314236 + MER2 DNA MER2_type 2 210 -135 28 0 0 0 chr1 120880222 120880250 -161313414 + AT_rich Low_complexity Low_complexity 1 28 0 2407 200 65 76 chr1 120880430 120881245 -161312419 + MER21B LTR ERV1 1 806 -57 683 167 270 18 chr1 120881709 120881966 -161311698 + MER33 DNA MER1_type 1 363 0 341 281 57 72 chr1 120882650 120882913 -161310751 + L2 LINE L2 2596 2854 -460 2016 148 3 0 chr1 120882931 120883228 -161310436 - AluJb SINE Alu -12 300 3 1558 178 45 11 chr1 120883242 120883528 -161310136 - AluJb SINE Alu -16 296 1 233 277 0 0 chr1 120883980 120884027 -161309637 - L2 LINE L2 -17 3255 3209 197 350 29 10 chr1 120885511 120885614 -161308050 - L2 LINE L2 -31 3282 3178 403 225 286 28 chr1 120886039 120886221 -161307443 - MIR SINE MIR 0 262 34 1554 162 0 81 chr1 120886296 120886617 -161307047 + AluJo SINE Alu 1 295 -17 228 248 26 89 chr1 120887065 120887190 -161306474 + MIR SINE MIR 4 116 -92 437 262 191 1 chr1 120887200 120887371 -161306293 - MIR SINE MIR -61 201 3 2240 84 3 3 chr1 120887708 120888017 -161305647 + AluSc SINE Alu 1 309 0 912 120 0 0 chr1 120888042 120888184 -161305480 + L1MA3 LINE L1 6163 6304 -1 560 277 28 0 chr1 120888266 120888407 -161305257 + MIR SINE MIR 72 216 -46 180 111 0 0 chr1 120888902 120888929 -161304735 + (TG)n Simple_repeat Simple_repeat 2 28 0 990 220 0 0 chr1 120890585 120890771 -161302893 - MER5A DNA MER1_type -3 186 1 477 272 132 28 chr1 120890890 120891103 -161302561 - MIR SINE MIR -2 260 26 2133 123 3 0 chr1 120891107 120891416 -161302248 + AluSx SINE Alu 1 310 -2 686 154 7 114 chr1 120891688 120891837 -161301827 - FLAM_A SINE Alu 0 133 1 290 264 213 32 chr1 120891964 120892119 -161301545 + MER5A DNA MER1_type 2 184 -5 363 205 27 3 chr1 120892129 120892235 -161301429 - MER5A DNA MER1_type 0 178 37 1525 154 11 39 chr1 120892235 120892514 -161301150 - AluJo SINE Alu -38 274 4 210 36 55 109 chr1 120892577 120892632 -161301032 + (TTTTTA)n Simple_repeat Simple_repeat 4 55 0 422 172 196 68 chr1 120893570 120893733 -161299931 + MER5A DNA MER1_type 4 187 -2 892 196 29 12 chr1 120893744 120893917 -161299747 + MER5B DNA MER1_type 2 177 -1 719 171 99 61 chr1 120894383 120894464 -161299200 + MIR SINE MIR 75 151 -111 2091 100 7 16 chr1 120894464 120894774 -161298890 + AluSx SINE Alu 1 307 -5 719 171 99 61 chr1 120894774 120894873 -161298791 + MIR SINE MIR 151 262 0 1898 144 0 25 chr1 120895627 120895947 -161297717 + AluJo SINE Alu 1 312 0 1458 127 92 7 chr1 120895955 120896247 -161297417 + MER33 DNA MER1_type 6 322 -2 697 305 155 30 chr1 120896253 120896788 -161296876 - L2 LINE L2 -484 2830 2229 279 218 11 69 chr1 120896787 120896874 -161296790 + MIR SINE MIR 111 192 -70 * 2098 120 10 0 chr1 120897785 120898093 -161295571 + AluSx SINE Alu 1 311 -1 1749 145 16 29 chr1 120898661 120898972 -161294692 + AluJo SINE Alu 1 307 -5 309 219 0 0 chr1 120898975 120899048 -161294616 + GA-rich Low_complexity Low_complexity 4 76 0 2266 39 60 0 chr1 120899373 120899657 -161294007 - AluY SINE Alu -10 301 1 273 261 82 37 chr1 120899915 120900049 -161293615 - MIR SINE MIR -24 238 99 300 326 43 7 chr1 120900132 120900270 -161293394 - MER117 DNA MER1_type -33 164 22 2034 71 71 21 chr1 120901496 120901776 -161291888 - AluSc SINE Alu -15 294 1 520 285 69 0 chr1 120902163 120902307 -161291357 - MIR SINE MIR 0 262 109 2134 103 0 0 chr1 120902309 120902599 -161291065 - AluY SINE Alu -15 296 7 1032 91 0 7 chr1 120902956 120903099 -161290565 - AluSq/x SINE Alu -171 142 1 439 379 29 0 chr1 120903675 120903815 -161289849 - L2 LINE L2 0 3272 3129 379 103 0 0 chr1 120903967 120904025 -161289639 - L1MD2 LINE L1 -15 6344 6287 685 177 0 39 chr1 120904025 120904155 -161289509 + FLAM_C SINE Alu 3 127 -16 2138 65 0 11 chr1 120904788 120905063 -161288601 + AluY SINE Alu 1 272 -39 23 0 0 0 chr1 120905126 120905149 -161288515 + AT_rich Low_complexity Low_complexity 1 23 0 302 152 91 0 chr1 120905213 120905279 -161288385 + L1M2 LINE L1 5432 5503 -794 306 232 20 71 chr1 120905476 120905575 -161288089 + MIR3 SINE MIR 109 202 -6 986 86 0 0 chr1 120906108 120906236 -161287428 + FLAM_C SINE Alu 1 128 -5 1716 141 58 10 chr1 120906263 120906554 -161287110 + AluJb SINE Alu 1 305 -7 228 263 0 18 chr1 120906781 120906838 -161286826 - L2 LINE L2 0 3272 3217 283 246 46 0 chr1 120906920 120906985 -161286679 - L2 LINE L2 -13 3300 3233 1250 91 12 0 chr1 120907088 120907253 -161286411 - AluSq SINE Alu -146 167 1 923 234 0 0 chr1 120907272 120907447 -161286217 - FAM SINE Alu 0 175 1 368 302 80 61 chr1 120907652 120907749 -161285915 - L3 LINE CR1 -388 1189 1095 1593 100 151 0 chr1 120907749 120908008 -161285656 + AluSx SINE Alu 1 298 -14 2116 71 4 4 chr1 120908014 120908316 -161285348 + AluY SINE Alu 3 304 0 368 302 80 61 chr1 120908316 120908422 -161285242 - L3 LINE CR1 -486 1091 974 1874 133 3 0 chr1 120908506 120908814 -161284850 + AluSp SINE Alu 2 310 -3 2155 118 0 7 chr1 120908814 120909120 -161284544 + AluSx SINE Alu 1 304 -8 711 120 0 0 chr1 120909385 120909485 -161284179 - AluJ/FLAM SINE Alu -210 102 3 2374 52 0 10 chr1 120909491 120909798 -161283866 - AluY SINE Alu -7 304 1 2463 40 0 3 chr1 120910465 120910765 -161282899 - AluY SINE Alu -12 299 1 232 158 0 35 chr1 120910938 120910995 -161282669 - L2 LINE L2 0 3313 3259 519 222 95 128 chr1 120911022 120911041 -161282623 - L1ME LINE L1 -353 5809 5791 1609 185 77 37 chr1 120911041 120911365 -161282299 - MER1B DNA MER1_type 0 337 1 519 222 95 128 chr1 120911365 120911539 -161282125 - L1ME LINE L1 -371 5791 5613 1929 136 3 0 chr1 120911539 120911826 -161281838 - AluSq SINE Alu -19 294 7 519 222 95 128 chr1 120911826 120911896 -161281768 - L1ME LINE L1 -549 5613 5542 2097 122 0 3 chr1 120911896 120912200 -161281464 - AluSc SINE Alu -6 303 1 519 222 95 128 chr1 120912200 120912505 -161281159 - L1ME LINE L1 -620 5542 5258 2134 111 0 3 chr1 120912518 120912825 -161280839 - AluSg SINE Alu -4 306 1 2087 113 7 0 chr1 120912932 120913223 -161280441 - AluSx SINE Alu -19 293 1 2307 55 17 0 chr1 120913317 120913609 -161280055 - AluY SINE Alu -14 297 1 1750 183 0 0 chr1 120913739 120914051 -161279613 + AluJb SINE Alu 1 312 0 24 53 0 0 chr1 120914182 120914220 -161279444 + AT_rich Low_complexity Low_complexity 1 38 0 487 102 0 57 chr1 120914284 120914372 -161279292 - L1PA13 LINE L1 -15 6148 6066 377 255 29 20 chr1 120914860 120914962 -161278702 - MIR3 SINE MIR -23 185 83 189 107 0 0 chr1 120915053 120915081 -161278583 + (T)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr1 120915433 120915457 -161278207 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 852 161 0 7 chr1 120915933 120916082 -161277582 - AluSx SINE Alu 0 309 162 2115 106 0 0 chr1 120916227 120916520 -161277144 + AluSx SINE Alu 7 299 -13 390 228 22 73 chr1 120916654 120916696 -161276968 + L1ME3 LINE L1 6034 6077 -85 210 37 0 0 chr1 120916696 120916723 -161276941 + (TG)n Simple_repeat Simple_repeat 1 27 0 390 228 22 73 chr1 120916723 120916735 -161276929 + L1ME3 LINE L1 6077 6088 -74 2234 131 24 0 chr1 120916735 120917071 -161276593 + MER2 DNA MER2_type 1 344 0 390 228 22 73 chr1 120917071 120917151 -161276513 + L1ME3 LINE L1 6088 6162 0 1293 186 125 0 chr1 120917434 120917713 -161275951 - L1MD3 LINE L1 -24 7971 7658 2166 102 0 0 chr1 120917715 120918018 -161275646 - AluSc SINE Alu -6 303 1 1264 109 6 0 chr1 120918021 120918195 -161275469 - AluSx SINE Alu -137 175 1 1631 162 3 51 chr1 120918526 120918660 -161275004 + AluJo SINE Alu 11 150 -162 2271 86 3 3 chr1 120918660 120918962 -161274702 + AluSx SINE Alu 1 302 -10 1631 162 3 51 chr1 120918962 120919141 -161274523 + AluJo SINE Alu 150 309 -3 1955 126 11 0 chr1 120919174 120919459 -161274205 + AluSc SINE Alu 1 288 -21 993 107 0 0 chr1 120919459 120919608 -161274056 + (TA)n Simple_repeat Simple_repeat 2 150 0 1285 98 6 0 chr1 120919801 120919975 -161273689 - AluSp SINE Alu -138 175 1 614 214 0 0 chr1 120919975 120920087 -161273577 - AluJo/FLAM SINE Alu -179 133 22 965 175 0 44 chr1 120920097 120920303 -161273361 - AluJo SINE Alu -8 304 108 790 165 0 15 chr1 120920539 120920672 -161272992 + AluJo/FLAM SINE Alu 1 131 -171 2095 99 0 0 chr1 120920675 120920997 -161272667 + AluSg SINE Alu 1 322 0 1079 60 0 46 chr1 120921020 120921171 -161272493 + Charlie3 DNA MER1_type 2563 2706 -4 2132 99 0 10 chr1 120921612 120921906 -161271758 + AluSx SINE Alu 1 291 -21 1560 163 45 7 chr1 120921931 120922220 -161271444 + AluJo SINE Alu 1 300 -12 331 178 41 14 chr1 120922243 120922316 -161271348 + L1MC5 LINE L1 7498 7572 -389 255 209 0 0 chr1 120922321 120922364 -161271300 + MLT1D LTR MaLR 1 43 -462 931 122 83 6 chr1 120922364 120922520 -161271144 + FRAM SINE Alu 1 165 -11 812 207 43 29 chr1 120922520 120922841 -161270823 + MLT1D LTR MaLR 33 399 -106 723 92 0 0 chr1 120922852 120922950 -161270714 - AluY SINE Alu -13 298 201 1328 126 0 5 chr1 120923051 120923250 -161270414 - AluSq SINE Alu -115 198 1 2062 108 0 0 chr1 120923257 120923579 -161270085 - AluSg SINE Alu 0 323 2 1457 164 42 42 chr1 120924577 120924887 -161268777 + AluJo SINE Alu 1 310 -2 2184 110 7 0 chr1 120924959 120925269 -161268395 + AluSx SINE Alu 1 312 0 1918 92 19 79 chr1 120925727 120926042 -161267622 + AluSx SINE Alu 1 296 -16 1868 112 33 16 chr1 120926042 120926344 -161267320 + AluSg SINE Alu 1 308 -2 458 135 189 18 chr1 120926450 120926561 -161267103 - L1MA4 LINE L1 -1 6299 6170 1349 191 22 18 chr1 120926569 120926846 -161266818 - AluJo SINE Alu -30 282 5 216 0 0 0 chr1 120927065 120927089 -161266575 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2057 112 0 7 chr1 120927102 120927389 -161266275 - AluSx SINE Alu -27 285 1 2005 142 0 0 chr1 120927391 120927687 -161265977 - AluJo SINE Alu -16 296 1 211 261 0 0 chr1 120927849 120927895 -161265769 - L2 LINE L2 -17 3255 3210 1241 171 96 31 chr1 120927945 120928238 -161265426 + AluJo SINE Alu 1 312 0 23 33 0 0 chr1 120928395 120928425 -161265239 + AT_rich Low_complexity Low_complexity 1 30 0 2152 67 42 3 chr1 120928438 120928723 -161264941 - AluY SINE Alu -11 300 5 2287 84 3 0 chr1 120928728 120929036 -161264628 - AluSp SINE Alu -3 310 2 277 301 39 10 chr1 120929120 120929223 -161264441 + L3 LINE CR1 974 1079 -498 2071 72 7 4 chr1 120929226 120929527 -161264137 - AluY SINE Alu 0 304 3 675 78 0 0 chr1 120929533 120929623 -161264041 - AluSg/x SINE Alu -14 298 209 688 50 0 0 chr1 120929625 120929705 -161263959 - AluSc SINE Alu -142 167 88 1114 88 0 19 chr1 120929805 120929965 -161263699 + AluY SINE Alu 139 295 -16 1389 150 24 28 chr1 120929970 120930223 -161263441 + AluJb SINE Alu 1 252 -60 309 178 0 0 chr1 120930223 120930268 -161263396 - Alu SINE Alu -258 45 1 276 267 0 53 chr1 120930745 120930820 -161262844 - L2 LINE L2 -2 3270 3200 1284 110 181 13 chr1 120931205 120931432 -161262232 + AluSg1 SINE Alu 1 265 -44 254 91 0 182 chr1 120931538 120931584 -161262080 + L1MC5 LINE L1 7726 7758 -203 1972 141 7 0 chr1 120931584 120931890 -161261774 - AluSq SINE Alu -5 308 1 254 91 0 182 chr1 120931890 120931909 -161261755 + L1MC5 LINE L1 7758 7779 -182 21 36 0 0 chr1 120931956 120931984 -161261680 + AT_rich Low_complexity Low_complexity 1 28 0 945 163 14 68 chr1 120932135 120932291 -161261373 + MER3 DNA MER1_type 1 143 -66 2116 116 0 0 chr1 120932291 120932584 -161261080 - AluSx SINE Alu -19 293 1 945 163 14 68 chr1 120932584 120932648 -161261016 + MER3 DNA MER1_type 143 209 0 495 269 167 46 chr1 120932799 120933189 -161260475 + MLT1K LTR MaLR 140 576 -12 361 101 75 57 chr1 120933205 120933320 -161260344 + FLAM_A SINE Alu 16 79 -53 1389 87 0 0 chr1 120933504 120933687 -161259977 - AluSg SINE Alu -10 300 118 776 145 8 0 chr1 120933687 120933818 -161259846 - AluSg/q SINE Alu -1 312 181 678 59 0 12 chr1 120933812 120933897 -161259767 - AluSg SINE Alu -170 140 57 * 1213 120 5 26 chr1 120933897 120934089 -161259575 - AluSg SINE Alu -121 189 2 1604 165 11 7 chr1 120934090 120934251 -161259413 - AluSx SINE Alu -16 296 131 6357 71 14 12 chr1 120934251 120935808 -161257856 - SVA Other Other -760 1386 21 1604 165 11 7 chr1 120935808 120935924 -161257740 - AluSx SINE Alu -181 131 17 1675 152 33 0 chr1 120935957 120936233 -161257431 + AluJb SINE Alu 1 285 -27 2212 71 0 24 chr1 120936851 120937146 -161256518 + AluY SINE Alu 1 288 -23 269 228 18 0 chr1 120937177 120937234 -161256430 - L2 LINE L2 -7 3265 3208 2204 88 0 7 chr1 120937992 120938298 -161255366 + AluSc SINE Alu 1 304 -5 429 237 78 38 chr1 120938850 120939003 -161254661 - L1MC/D LINE L1 -795 5447 5291 27 0 0 0 chr1 120939100 120939127 -161254537 + AT_rich Low_complexity Low_complexity 1 27 0 1698 159 7 0 chr1 120939325 120939602 -161254062 + AluJo SINE Alu 1 279 -33 183 42 0 0 chr1 120939602 120939626 -161254038 + (CA)n Simple_repeat Simple_repeat 1 24 0 2261 94 7 0 chr1 120939757 120940065 -161253599 + AluSp SINE Alu 1 310 -3 2200 82 0 13 chr1 120940832 120941137 -161252527 - AluY SINE Alu -10 301 1 9028 86 2 1 chr1 120941291 120942508 -161251156 + L1P LINE L1 1496 2714 -3432 1626 167 38 3 chr1 120942777 120943070 -161250594 - AluJb SINE Alu -9 303 1 217 75 0 25 chr1 120943143 120943183 -161250481 - L2 LINE L2 0 3313 3275 519 222 95 128 chr1 120943229 120943248 -161250416 - L1ME LINE L1 -353 5809 5791 1690 167 77 37 chr1 120943248 120943572 -161250092 - MER1B DNA MER1_type 0 337 1 519 222 95 128 chr1 120943572 120943746 -161249918 - L1ME LINE L1 -371 5791 5613 1913 139 3 0 chr1 120943746 120944033 -161249631 - AluSq SINE Alu -19 294 7 519 222 95 128 chr1 120944033 120944103 -161249561 - L1ME LINE L1 -549 5613 5542 2097 122 0 3 chr1 120944103 120944407 -161249257 - AluSc SINE Alu -6 303 1 519 222 95 128 chr1 120944407 120944712 -161248952 - L1ME LINE L1 -620 5542 5258 2124 114 0 3 chr1 120944725 120945032 -161248632 - AluSg SINE Alu -4 306 1 2087 113 7 0 chr1 120945140 120945431 -161248233 - AluSx SINE Alu -19 293 1 216 0 0 0 chr1 120945692 120945716 -161247948 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1132 148 0 0 chr1 120946192 120946375 -161247289 - AluSg/x SINE Alu 0 309 127 1346 111 0 58 chr1 120946384 120946634 -161247030 - AluSg/x SINE Alu 0 324 87 431 196 143 58 chr1 120947222 120947346 -161246318 - L2 LINE L2 0 3313 3166 713 206 0 22 chr1 120947346 120947482 -161246182 + FLAM_A SINE Alu 1 133 0 431 196 143 58 chr1 120947482 120947546 -161246118 - L2 LINE L2 -147 3166 3109 2386 60 0 0 chr1 120947557 120947855 -161245809 - AluY SINE Alu -10 301 4 2187 89 0 7 chr1 120947990 120948292 -161245372 - AluY SINE Alu -11 300 1 2122 111 0 13 chr1 120948783 120949089 -161244575 - AluSx SINE Alu -10 302 1 510 270 27 0 chr1 120949187 120949298 -161244366 - L2 LINE L2 -16 3297 3184 968 176 46 80 chr1 120949402 120949640 -161244024 - MER21B LTR ERV1 -629 234 5 254 318 0 0 chr1 120952190 120952256 -161241408 + L2 LINE L2 3207 3272 0 1879 124 10 3 chr1 120952352 120952665 -161240999 - AluSx SINE Alu 0 312 1 1663 160 48 7 chr1 120953289 120953582 -161240082 - AluJb SINE Alu -5 307 3 213 362 168 7 chr1 120953597 120953746 -161239918 + L2 LINE L2 2554 2726 -588 1534 114 4 0 chr1 120953822 120954049 -161239615 - Tigger5 DNA MER2_type 0 2323 2096 376 133 8 92 chr1 120954092 120954199 -161239465 - Charlie5 DNA MER1_type -37 2587 2489 183 42 0 0 chr1 120954199 120954223 -161239441 + (TA)n Simple_repeat Simple_repeat 1 24 0 376 133 8 92 chr1 120954223 120954235 -161239429 - Charlie5 DNA MER1_type -135 2489 2478 1826 154 3 0 chr1 120954236 120954521 -161239143 - AluJb SINE Alu -26 286 1 2379 65 0 7 chr1 120954571 120954879 -161238785 + AluY SINE Alu 1 306 -5 1203 98 0 0 chr1 120954879 120955042 -161238622 + AluSg/x SINE Alu 134 296 -16 474 239 13 64 chr1 120955050 120955222 -161238442 - MER33 DNA MER1_type -265 59 1 822 159 49 66 chr1 120955549 120955646 -161238018 - L1ME3 LINE L1 -21 6141 6044 2259 55 0 0 chr1 120955646 120955921 -161237743 + AluY SINE Alu 1 275 -36 473 76 0 43 chr1 120955924 120956016 -161237648 + (TA)n Simple_repeat Simple_repeat 2 89 0 822 159 49 66 chr1 120956016 120956140 -161237524 - L1ME3 LINE L1 -120 6042 5920 5738 77 22 7 chr1 120956366 120957475 -161236189 + SVA Other Other 145 1385 -1 1374 49 0 22 chr1 120957490 120957673 -161235991 + AluY SINE Alu 118 296 -15 463 296 118 41 chr1 120958067 120958287 -161235377 - L3 LINE CR1 -3 1574 1338 207 299 138 0 chr1 120958359 120958467 -161235197 - MIR SINE MIR -62 146 20 1293 74 0 11 chr1 120959332 120959508 -161234156 - AluSg/x SINE Alu -2 310 137 1669 149 10 3 chr1 120959512 120959801 -161233863 - AluJb SINE Alu -17 295 5 1163 207 87 105 chr1 120959935 120960019 -161233645 + MER20B DNA MER1_type 190 274 -509 2342 81 0 7 chr1 120960019 120960329 -161233335 + AluSc SINE Alu 1 308 -1 1163 207 87 105 chr1 120960329 120960494 -161233170 + MER20B DNA MER1_type 274 440 -343 2557 115 37 21 chr1 120960494 120960929 -161232735 + LTR56 LTR ERV1 4 445 0 1163 207 87 105 chr1 120960929 120961182 -161232482 + MER20B DNA MER1_type 440 684 -99 1772 198 76 80 chr1 120961182 120961660 -161232004 - MLT1F1 LTR MaLR 0 567 92 2360 77 0 0 chr1 120961660 120961957 -161231707 + AluSg SINE Alu 1 297 -13 1772 198 76 80 chr1 120961957 120962049 -161231615 - MLT1F1 LTR MaLR -475 92 1 283 202 77 77 chr1 120962049 120962153 -161231511 + MER20B DNA MER1_type 679 782 -1 259 304 104 0 chr1 120962190 120962369 -161231295 + L1ME2 LINE L1 5734 5932 -232 2357 57 0 10 chr1 120962609 120962906 -161230758 + AluY SINE Alu 3 296 -15 218 267 17 103 chr1 120963097 120963213 -161230451 - L2 LINE L2 -569 2745 2640 894 105 0 0 chr1 120963454 120963578 -161230086 + AluSq/x SINE Alu 1 124 -188 207 0 0 0 chr1 120963591 120963614 -161230050 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 241 298 24 0 chr1 120963733 120963817 -161229847 + GA-rich Low_complexity Low_complexity 5 90 0 1556 107 4 74 chr1 120963859 120964130 -161229534 + AluSq SINE Alu 54 305 -8 882 306 0 21 chr1 120964667 120964909 -161228755 + MIR SINE MIR 15 251 -11 2250 83 7 0 chr1 120964915 120965216 -161228448 - AluSp SINE Alu -9 304 2 327 329 225 12 chr1 120965311 120965560 -161228104 - L2 LINE L2 -4 3268 2967 376 342 73 44 chr1 120965560 120965972 -161227692 + L2 LINE L2 2890 3313 0 205 330 107 10 chr1 120966610 120966713 -161226951 + L2 LINE L2 3169 3281 -32 1681 182 3 0 chr1 120966730 120967021 -161226643 - AluJb SINE Alu -15 297 6 2541 144 80 24 chr1 120967046 120967510 -161226154 - LTR2B LTR ERV1 0 490 1 315 198 250 17 chr1 120967521 120967637 -161226027 - MIR SINE MIR 0 262 120 2273 73 10 0 chr1 120967639 120967928 -161225736 - AluSc SINE Alu -17 292 1 2241 60 3 0 chr1 120968222 120968527 -161225137 + AluY SINE Alu 1 306 0 2066 114 3 0 chr1 120968541 120968830 -161224834 + AluSg SINE Alu 3 292 -18 1969 134 3 0 chr1 120968887 120969186 -161224478 - AluSx SINE Alu -12 300 1 1988 110 0 41 chr1 120969192 120969509 -161224155 - AluSx SINE Alu -6 306 3 2205 102 0 6 chr1 120969517 120969831 -161223833 - AluSx SINE Alu 0 312 1 2281 75 13 0 chr1 120970427 120970732 -161222932 - AluSp SINE Alu -4 309 1 1863 68 13 91 chr1 120970744 120971074 -161222590 - AluSx SINE Alu 0 306 1 2153 49 7 21 chr1 120971865 120972188 -161221476 - AluSp SINE Alu 0 319 1 1054 38 8 0 chr1 120972190 120972321 -161221343 - AluSp SINE Alu -181 132 1 691 157 0 0 chr1 120974604 120974712 -161218952 - FRAM SINE Alu -21 155 48 1927 153 0 0 chr1 120975234 120975529 -161218135 + AluJo SINE Alu 2 296 -16 1148 70 0 0 chr1 120975878 120976020 -161217644 + AluSq/x SINE Alu 1 142 -170 2216 88 7 0 chr1 120976021 120976318 -161217346 + AluSx SINE Alu 1 299 -13 331 269 7 14 chr1 120979158 120979299 -161214365 + (TA)n Simple_repeat Simple_repeat 2 141 0 723 118 10 0 chr1 120979457 120979559 -161214105 + AluSq/x SINE Alu 31 133 -180 477 118 0 0 chr1 120979560 120979636 -161214028 + AluS SINE Alu 230 305 -4 1494 171 3 31 chr1 120980096 120980245 -161213419 + AluJo SINE Alu 1 140 -172 2054 108 14 0 chr1 120980245 120980542 -161213122 + AluY SINE Alu 1 301 -10 1494 171 3 31 chr1 120980542 120980685 -161212979 + AluJo SINE Alu 140 285 -27 258 32 0 0 chr1 120980689 120980720 -161212944 + (CATA)n Simple_repeat Simple_repeat 3 33 0 2240 76 3 0 chr1 120980887 120981176 -161212488 + AluSp SINE Alu 1 290 -23 2217 90 0 0 chr1 120981181 120981480 -161212184 + AluSx SINE Alu 1 299 -13 2124 104 0 0 chr1 120981483 120981780 -161211884 + AluSg SINE Alu 1 297 -13 791 169 74 0 chr1 120981858 120982006 -161211658 + FRAM SINE Alu 1 159 -7 2060 112 3 6 chr1 120982829 120983142 -161210522 - AluJb SINE Alu 0 312 1 997 157 12 0 chr1 120983152 120983318 -161210346 - AluJb SINE Alu -4 308 141 2460 37 10 3 chr1 120983354 120983654 -161210010 - AluY SINE Alu -9 302 1 188 308 90 0 chr1 120983788 120983866 -161209798 + MER5A DNA MER1_type 62 146 -43 2018 102 3 54 chr1 120984035 120984349 -161209315 - AluSx SINE Alu -14 298 1 1992 131 0 6 chr1 120984494 120984806 -161208858 - AluSq SINE Alu -3 310 1 2090 86 3 48 chr1 120984821 120985134 -161208530 - AluSg SINE Alu -11 299 1 2166 49 29 49 chr1 120985708 120986016 -161207648 - AluY SINE Alu -9 302 1 2042 111 10 0 chr1 120986020 120986309 -161207355 - AluSx SINE Alu -16 296 5 792 185 20 0 chr1 120986829 120986975 -161206689 - AluJb SINE Alu -23 289 141 245 208 117 52 chr1 120987363 120987440 -161206224 + L2 LINE L2 3188 3269 -3 2338 80 3 0 chr1 120987625 120987926 -161205738 + AluSg SINE Alu 1 302 -8 1491 178 93 0 chr1 120989629 120989898 -161203766 + AluJo SINE Alu 1 294 -18 2122 164 0 0 chr1 120990153 120990465 -161203199 - AluSx SINE Alu 0 312 1 296 221 73 0 chr1 120991061 120991129 -161202535 + L2 LINE L2 3186 3258 -14 1812 96 4 0 chr1 120991190 120991419 -161202245 + AluSq SINE Alu 2 231 -82 960 105 0 0 chr1 120991615 120991739 -161201925 + AluSq/x SINE Alu 1 124 -188 243 0 0 0 chr1 120991752 120991779 -161201885 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 255 294 11 25 chr1 120991898 120992020 -161201644 + GA-rich Low_complexity Low_complexity 1 120 0 1510 126 0 81 chr1 120992024 120992305 -161201359 + AluSx SINE Alu 54 312 0 2394 114 0 0 chr1 120992351 120992659 -161201005 - AluSx SINE Alu -4 308 1 1066 331 89 44 chr1 120993064 120994007 -161199657 + L2 LINE L2 1734 2767 -505 1925 137 7 23 chr1 120994007 120994306 -161199358 + AluJo SINE Alu 1 294 -18 1066 331 89 44 chr1 120994306 120994835 -161198829 + L2 LINE L2 2767 3271 -1 2017 116 0 11 chr1 120995930 120996215 -161197449 + AluJb SINE Alu 1 282 -30 864 77 0 0 chr1 120996215 120996332 -161197332 + (GA)n Simple_repeat Simple_repeat 2 118 0 710 162 8 0 chr1 120998325 120998442 -161195222 - FLAM_C SINE Alu -15 118 1 249 289 0 22 chr1 120999152 120999242 -161194422 + MIR SINE MIR 123 210 -52 2372 108 0 13 chr1 120999549 120999864 -161193800 - AluSx SINE Alu -1 311 1 655 245 27 27 chr1 121000410 121000598 -161193066 + MIR SINE MIR 68 255 -7 2358 113 10 0 chr1 121000722 121001032 -161192632 + AluSp SINE Alu 1 313 0 216 363 75 31 chr1 121001247 121001636 -161192028 - L2 LINE L2 -544 2770 2365 2383 104 3 0 chr1 121001769 121002077 -161191587 - AluSx SINE Alu -3 309 1 1671 173 46 0 chr1 121002080 121002364 -161191300 - AluJb SINE Alu -15 297 1 952 305 28 5 chr1 121002411 121002801 -161190863 - L1ME3A LINE L1 -219 5951 5553 792 104 148 0 chr1 121002860 121002995 -161190669 + MLT1A1 LTR MaLR 3 157 -208 1035 122 0 0 chr1 121002996 121003135 -161190529 + AluSq/x SINE Alu 1 139 -174 2244 108 0 3 chr1 121003296 121003593 -161190071 - AluY SINE Alu -14 297 2 2328 229 38 49 chr1 121003594 121003808 -161189856 - L1ME3 LINE L1 -274 5888 5673 678 152 63 0 chr1 121003808 121003966 -161189698 - L1MA7 LINE L1 0 6291 6124 2328 229 38 49 chr1 121003966 121004745 -161188919 - L1ME3 LINE L1 -489 5673 4920 1257 236 190 21 chr1 121004743 121004833 -161188831 + L1M4 LINE L1 3944 4017 -2129 * 2518 94 0 0 chr1 121004833 121005140 -161188524 - AluSc SINE Alu -2 307 1 1257 236 190 21 chr1 121005140 121005571 -161188093 + L1M4 LINE L1 4017 4553 -1593 1506 147 104 88 chr1 121005589 121005754 -161187910 - AluJo SINE Alu 0 312 138 279 0 0 0 chr1 121005754 121005785 -161187879 + (TA)n Simple_repeat Simple_repeat 1 31 0 1506 147 104 88 chr1 121005785 121005926 -161187738 - AluJo SINE Alu -174 138 1 1537 183 140 0 chr1 121005980 121006330 -161187334 - L1MD2 LINE L1 -21 6338 5940 1965 161 0 17 chr1 121006490 121006789 -161186875 + AluJo SINE Alu 1 294 -18 2073 109 64 0 chr1 121007302 121007585 -161186079 + AluSq SINE Alu 1 301 -12 295 239 67 28 chr1 121008172 121008282 -161185382 + MIR SINE MIR 58 176 -64 181 241 19 19 chr1 121008358 121008412 -161185252 + L2 LINE L2 3216 3269 -3 240 333 58 0 chr1 121008443 121008563 -161185101 - L3b LINE CR1 -311 1272 1146 1592 186 7 42 chr1 121008577 121008883 -161184781 + AluJo SINE Alu 1 295 -17 196 414 30 0 chr1 121009481 121009580 -161184084 - MIR SINE MIR -62 146 45 1085 157 76 30 chr1 121009756 121009953 -161183711 - AluJo SINE Alu -13 299 94 1321 198 45 67 chr1 121010107 121010421 -161183243 - AluJo SINE Alu -5 307 1 32 0 0 0 chr1 121010421 121010453 -161183211 + AT_rich Low_complexity Low_complexity 1 32 0 366 236 12 20 chr1 121010453 121010525 -161183139 - L1MCa LINE L1 -1339 6983 6912 694 203 0 0 chr1 121010525 121010658 -161183006 - FLAM_A SINE Alu 0 133 1 366 236 12 20 chr1 121010658 121010684 -161182980 - L1MCa LINE L1 -1410 6912 1994 2300 110 3 10 chr1 121010758 121011067 -161182597 - AluSg SINE Alu -3 307 1 2025 113 9 60 chr1 121011394 121011713 -161181951 + AluSx SINE Alu 1 303 -9 194 327 40 51 chr1 121011749 121011968 -161181696 - MIR SINE MIR -19 243 32 1980 137 19 23 chr1 121014304 121014611 -161179053 + AluJb SINE Alu 6 311 -1 33 0 0 0 chr1 121014840 121014873 -161178791 + AT_rich Low_complexity Low_complexity 1 33 0 607 164 302 0 chr1 121015631 121015790 -161177874 + MER3 DNA MER1_type 3 209 0 753 200 21 0 chr1 121016800 121016940 -161176724 + MER3 DNA MER1_type 4 146 -63 865 179 0 14 chr1 121016940 121017085 -161176579 - FLAM_C SINE Alu 0 143 1 22 0 0 0 chr1 121017259 121017281 -161176383 + AT_rich Low_complexity Low_complexity 1 22 0 358 345 102 22 chr1 121017316 121017459 -161176205 - L1ME4a LINE L1 -84 6037 5868 2322 93 3 40 chr1 121017459 121017637 -161176027 - AluSx SINE Alu 0 312 150 2121 136 0 29 chr1 121017637 121017953 -161175711 - AluSx SINE Alu -5 307 1 2322 93 3 40 chr1 121017953 121018098 -161175566 - AluSx SINE Alu -162 150 1 358 345 102 22 chr1 121018098 121018180 -161175484 - L1ME4a LINE L1 -253 5868 5794 2375 110 0 0 chr1 121018458 121018759 -161174905 + AluSx SINE Alu 1 301 -11 634 259 61 76 chr1 121019346 121019608 -161174056 + MIR SINE MIR 4 261 -1 264 265 84 0 chr1 121023772 121023855 -161169809 - L2 LINE L2 -13 3259 3170 2195 99 0 3 chr1 121024817 121025100 -161168564 + AluSx SINE Alu 22 303 -9 238 268 35 70 chr1 121026577 121026680 -161166984 + L2 LINE L2 2923 3021 -251 2473 89 3 0 chr1 121026680 121026983 -161166681 - AluSp SINE Alu -9 304 1 238 268 35 70 chr1 121026983 121027021 -161166643 + L2 LINE L2 3021 3059 -213 191 36 36 0 chr1 121027623 121027651 -161166013 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 2158 140 7 0 chr1 121027658 121027965 -161165699 - AluSx SINE Alu -3 309 1 342 267 59 30 chr1 121027970 121028105 -161165559 - L2 LINE L2 0 3272 3134 406 312 134 16 chr1 121028168 121028354 -161165310 - L2 LINE L2 -399 2915 2708 307 317 153 15 chr1 121028401 121028669 -161164995 + L1MC4 LINE L1 7505 7809 -233 405 81 0 0 chr1 121028725 121028787 -161164877 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2385 100 3 0 chr1 121028910 121029211 -161164453 + AluSg SINE Alu 1 302 -8 1247 154 108 66 chr1 121029338 121029624 -161164040 + AluJo SINE Alu 3 300 -12 463 248 10 0 chr1 121030404 121030505 -161163159 + MIR SINE MIR 6 107 -155 194 320 115 0 chr1 121030800 121030878 -161162786 + MIR3 SINE MIR 96 182 -26 259 241 46 35 chr1 121031783 121031870 -161161794 - L3b LINE CR1 -217 1366 1279 347 269 120 9 chr1 121032201 121032309 -161161355 - MIR3 SINE MIR -46 162 43 251 234 0 47 chr1 121033339 121033467 -161160197 + G-rich Low_complexity Low_complexity 4 125 0 25 0 0 0 chr1 121033552 121033577 -161160087 + GC_rich Low_complexity Low_complexity 1 25 0 282 160 0 0 chr1 121033895 121033945 -161159719 + (CTG)n Simple_repeat Simple_repeat 3 52 0 180 0 0 0 chr1 121040428 121040448 -161153216 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2076 78 0 61 chr1 121040449 121040745 -161152919 - AluSg SINE Alu -32 278 1 1774 162 21 0 chr1 121040869 121041159 -161152505 + AluJo SINE Alu 10 305 -7 21 0 0 0 chr1 121042484 121042505 -161151159 + GC_rich Low_complexity Low_complexity 1 21 0 715 215 48 0 chr1 121043094 121043267 -161150397 + MIR SINE MIR 17 197 -65 210 241 51 51 chr1 121043326 121043405 -161150259 - MIR SINE MIR -96 112 34 212 244 0 0 chr1 121045945 121045990 -161147674 + (TG)n Simple_repeat Simple_repeat 1 45 0 251 248 106 53 chr1 121048423 121048536 -161145128 + MIR3 SINE MIR 12 130 -78 1638 83 76 76 chr1 121050189 121050498 -161143166 - AluSg SINE Alu 0 313 5 2210 94 0 10 chr1 121050513 121050810 -161142854 - AluSc SINE Alu -15 294 1 216 97 0 0 chr1 121056705 121056736 -161136928 + (GGA)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chr1 121057336 121057372 -161136292 + GC_rich Low_complexity Low_complexity 1 36 0 797 172 23 0 chr1 121060140 121060268 -161133396 - FLAM_C SINE Alu -12 131 1 2169 117 0 7 chr1 121060319 121060619 -161133045 + AluSx SINE Alu 1 298 -14 1896 131 10 3 chr1 121060682 121060980 -161132684 + AluJb SINE Alu 9 308 -4 651 270 0 25 chr1 121060996 121061159 -161132505 + MIR SINE MIR 98 256 -6 2270 103 3 3 chr1 121062701 121063013 -161130651 + AluSp SINE Alu 1 312 -1 2186 103 0 7 chr1 121063023 121063323 -161130341 + AluSx SINE Alu 1 298 -14 210 224 75 119 chr1 121065212 121065346 -161128318 - MIR SINE MIR -12 250 123 205 245 0 20 chr1 121066431 121066480 -161127184 + CT-rich Low_complexity Low_complexity 2 49 0 4368 114 18 2 chr1 121067855 121068480 -161125184 + MER41B LTR ERV1 1 635 0 2756 133 39 17 chr1 121068480 121068594 -161125070 + MER41B LTR ERV1 108 218 -417 2471 53 0 0 chr1 121068594 121068894 -161124770 + AluY SINE Alu 1 300 -11 2756 133 39 17 chr1 121068894 121069296 -161124368 + MER41B LTR ERV1 218 635 0 1212 110 5 0 chr1 121069529 121069720 -161123944 + MER4B LTR ERV1 1 192 -418 2075 109 13 10 chr1 121069725 121070036 -161123628 + AluSx SINE Alu 1 312 0 1087 120 96 0 chr1 121070158 121070325 -161123339 - AluSx SINE Alu -129 183 1 733 105 0 40 chr1 121070327 121070350 -161123314 + MER4D LTR ERV1 206 228 -675 3989 69 45 8 chr1 121070350 121070884 -161122780 - MER41A LTR ERV1 0 554 1 733 105 0 40 chr1 121070884 121070984 -161122680 + MER4D LTR ERV1 228 324 -579 2255 74 26 23 chr1 121071029 121071339 -161122325 - AluY SINE Alu 0 311 1 1628 70 14 0 chr1 121071456 121071670 -161121994 - L1PB1 LINE L1 -8 6143 5927 2664 143 78 40 chr1 121071670 121071971 -161121693 + MER4D LTR ERV1 309 597 -306 2333 84 0 0 chr1 121071971 121072270 -161121394 - AluY SINE Alu -11 300 2 2664 143 78 40 chr1 121072270 121072541 -161121123 + MER4D LTR ERV1 597 903 0 2281 95 3 3 chr1 121072897 121073201 -161120463 - AluSx SINE Alu -8 304 1 2190 113 3 0 chr1 121073446 121073755 -161119909 + AluY SINE Alu 1 310 -1 563 199 35 0 chr1 121074171 121074312 -161119352 - MER105 DNA DNA -48 156 11 464 254 87 16 chr1 121074522 121074648 -161119016 + MIR SINE MIR 21 155 -107 1118 216 128 48 chr1 121074685 121075121 -161118543 - MLT1H LTR MaLR 0 549 79 2150 125 0 6 chr1 121075283 121075596 -161118068 - AluSx SINE Alu -1 311 1 972 104 7 0 chr1 121075596 121075731 -161117933 - AluSq/x SINE Alu -176 136 1 2211 66 11 7 chr1 121077210 121077520 -161116144 + AluY SINE Alu 1 311 0 2072 127 0 0 chr1 121077530 121077822 -161115842 + AluSx SINE Alu 1 292 -20 516 310 44 0 chr1 121078167 121078325 -161115339 - L2 LINE L2 -1 3271 3107 363 304 10 51 chr1 121078502 121078706 -161114958 + MIR SINE MIR 19 212 -50 2303 98 0 0 chr1 121080190 121080487 -161113177 - AluSx SINE Alu -15 297 1 2396 100 0 0 chr1 121085207 121085518 -161108146 + AluSq SINE Alu 1 311 -2 614 182 7 0 chr1 121085765 121085919 -161107745 + (TG)n Simple_repeat Simple_repeat 1 155 0 678 228 93 63 chr1 121086259 121086527 -161107137 + L2 LINE L2 606 881 -2433 375 244 13 0 chr1 121086750 121086828 -161106836 + MLT1J2 LTR MaLR 255 333 -117 1607 277 51 14 chr1 121086921 121087412 -161106252 + L2 LINE L2 883 1391 -1923 1487 268 115 16 chr1 121087422 121088038 -161105626 + L2 LINE L2 2655 3311 -2 225 132 0 0 chr1 121088038 121088076 -161105588 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 203 171 49 0 chr1 121088753 121088794 -161104870 - L3 LINE CR1 -28 1549 1507 296 259 204 9 chr1 121088931 121089039 -161104625 - MIR3 SINE MIR -48 160 32 508 261 94 11 chr1 121089594 121089828 -161103836 - MIR SINE MIR -12 250 3 772 229 83 5 chr1 121091306 121091511 -161102153 + MIR SINE MIR 42 262 0 274 293 105 58 chr1 121091611 121091802 -161101862 + MIR SINE MIR 36 235 -27 364 202 60 0 chr1 121091923 121092007 -161101657 - L1MC1 LINE L1 -1 6332 6244 301 339 21 26 chr1 121092448 121092579 -161101085 - MER5A DNA MER1_type -42 141 4 180 176 0 0 chr1 121093900 121093934 -161099730 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr1 121098984 121099012 -161094652 + AT_rich Low_complexity Low_complexity 1 28 0 1897 141 0 22 chr1 121099495 121099807 -161093857 - AluJb SINE Alu -6 306 2 1883 124 3 49 chr1 121099972 121100278 -161093386 - AluSx SINE Alu -20 292 1 600 218 92 7 chr1 121101073 121101215 -161092449 - MER3 DNA MER1_type -54 155 2 2088 99 7 0 chr1 121101902 121102196 -161091468 - AluSg SINE Alu -14 296 1 1434 192 55 0 chr1 121102415 121102686 -161090978 - AluJb SINE Alu -21 291 6 750 199 15 0 chr1 121102693 121102824 -161090840 - FLAM_C SINE Alu 0 133 1 215 314 148 67 chr1 121103208 121103331 -161090333 + L2 LINE L2 1758 1870 -1444 2271 100 3 3 chr1 121103331 121103642 -161090022 + AluSx SINE Alu 1 311 -1 215 314 148 67 chr1 121103642 121104173 -161089491 + L2 LINE L2 1870 2465 -849 246 284 15 0 chr1 121104318 121104385 -161089279 + L2 LINE L2 2987 3054 -218 211 234 21 0 chr1 121104727 121104774 -161088890 + MIR SINE MIR 28 75 -187 327 209 45 0 chr1 121104811 121104878 -161088786 + MIR SINE MIR 192 261 -1 310 343 113 55 chr1 121104909 121105183 -161088481 - L2 LINE L2 -98 3174 2885 946 130 0 0 chr1 121105853 121105984 -161087680 - FLAM_C SINE Alu -2 131 1 1858 119 0 40 chr1 121106284 121106586 -161087078 - AluSx SINE Alu -22 290 1 200 267 33 17 chr1 121107115 121107175 -161086489 + L3 LINE CR1 1507 1567 -10 1929 135 0 31 chr1 121107863 121108182 -161085482 - AluSg SINE Alu -1 309 1 556 116 151 7 chr1 121108311 121108457 -161085207 + Charlie5 DNA MER1_type 2418 2584 -28 2161 94 10 13 chr1 121108978 121109285 -161084379 - AluSx SINE Alu -6 306 1 1270 144 0 104 chr1 121109562 121109833 -161083831 + AluSp SINE Alu 60 304 0 1699 157 20 17 chr1 121109862 121110162 -161083502 - AluJb SINE Alu -11 301 1 313 233 17 0 chr1 121110229 121110289 -161083375 + L1MC4 LINE L1 6642 6702 -1340 * 378 273 23 0 chr1 121110262 121110350 -161083314 - L1MC4 LINE L1 -1339 6703 6614 349 200 43 0 chr1 121110327 121110397 -161083267 - L1MCa LINE L1 -4358 2068 1996 * 332 173 0 0 chr1 121110366 121110418 -161083246 - L1MC4 LINE L1 -1339 6983 6932 * 859 120 0 0 chr1 121110452 121110569 -161083095 - FLAM_C SINE Alu -16 117 1 4377 144 33 63 chr1 121111523 121112410 -161081254 - L1MB2 LINE L1 -31 6140 5281 686 227 239 18 chr1 121112644 121112975 -161080689 + L1M3e LINE L1 1484 1887 -5143 4462 191 48 24 chr1 121112991 121113068 -161080596 + L1M3e LINE L1 3220 3294 -3812 2196 101 0 0 chr1 121113068 121113366 -161080298 - AluY SINE Alu -13 298 1 4462 191 48 24 chr1 121113366 121113819 -161079845 + L1M3e LINE L1 3294 3735 -3371 1875 108 38 14 chr1 121113819 121114106 -161079558 - AluSg SINE Alu -16 294 1 4462 191 48 24 chr1 121114106 121114687 -161078977 + L1M3e LINE L1 3735 4358 -2748 408 300 30 60 chr1 121114851 121114899 -161078765 - HAL1 LINE L1 -879 1628 1580 2098 105 0 3 chr1 121114899 121115195 -161078469 + AluSq SINE Alu 5 299 -14 408 300 30 60 chr1 121115195 121115346 -161078318 - HAL1 LINE L1 -927 1580 1435 1000 180 109 88 chr1 121115508 121115792 -161077872 + MLT1A1 LTR MaLR 76 365 0 236 194 116 78 chr1 121115792 121115810 -161077854 + L1MEd LINE L1 932 948 -5171 2138 116 0 7 chr1 121115810 121116113 -161077551 + AluSx SINE Alu 1 301 -11 236 194 116 78 chr1 121116113 121116223 -161077441 + L1MEd LINE L1 948 1065 -5054 435 143 0 0 chr1 121116233 121116296 -161077368 - AluJb SINE Alu -138 174 112 195 0 0 79 chr1 121116303 121116341 -161077323 + (AATAG)n Simple_repeat Simple_repeat 3 37 0 317 228 24 71 chr1 121116341 121116468 -161077196 + L1MEd LINE L1 1104 1224 -4895 1627 153 3 33 chr1 121116472 121116772 -161076892 + AluJb SINE Alu 7 297 -15 608 181 29 101 chr1 121116848 121116986 -161076678 - MLT1G LTR MaLR -382 178 21 229 222 0 0 chr1 121117017 121117062 -161076602 - MLT1G LTR MaLR -526 64 20 929 169 0 7 chr1 121117188 121117342 -161076322 - FRAM SINE Alu -25 151 1 2048 112 0 33 chr1 121117347 121117652 -161076012 - AluSx SINE Alu -17 295 1 2811 152 18 27 chr1 121117706 121118219 -161075445 + L1MC1 LINE L1 5820 6327 -6 2275 68 0 26 chr1 121118219 121118573 -161075091 - AluY SINE Alu 0 346 1 2224 94 3 0 chr1 121118575 121118874 -161074790 - AluSx SINE Alu -12 300 1 575 200 27 109 chr1 121120021 121120241 -161073423 - L2 LINE L2 0 3313 3112 213 276 24 79 chr1 121120321 121120448 -161073216 + MIR SINE MIR 143 262 0 273 237 13 13 chr1 121121609 121121685 -161071979 + MER5A DNA MER1_type 89 164 -25 1976 133 3 3 chr1 121122309 121122609 -161071055 - AluJb SINE Alu -12 300 1 301 197 61 15 chr1 121123023 121123089 -161070575 + L1ME2 LINE L1 6096 6164 0 1860 138 6 28 chr1 121123098 121123417 -161070247 + AluJb SINE Alu 1 312 0 317 269 59 34 chr1 121123466 121123585 -161070079 + L1MC5 LINE L1 7787 7908 -53 1038 212 237 13 chr1 121123677 121124049 -161069615 + L1ME4a LINE L1 5577 6031 -90 1390 83 76 6 chr1 121124053 121124319 -161069345 - AluSg SINE Alu 0 316 1 357 160 53 0 chr1 121124321 121124396 -161069268 + L1ME4a LINE L1 6034 6112 -9 2459 65 3 3 chr1 121124431 121124741 -161068923 + AluSp SINE Alu 1 310 -3 375 236 32 89 chr1 121124787 121124910 -161068754 - MIR3 SINE MIR -5 203 88 269 228 18 0 chr1 121125532 121125589 -161068075 + L2 LINE L2 3208 3265 -7 2258 55 3 10 chr1 121125620 121125910 -161067754 - AluY SINE Alu -23 288 1 41 21 0 0 chr1 121125989 121126037 -161067627 + AT_rich Low_complexity Low_complexity 1 48 0 37 18 0 18 chr1 121126279 121126293 -161067371 + AT_rich Low_complexity Low_complexity 1 14 -40 1561 181 17 24 chr1 121126293 121126581 -161067083 + AluJo SINE Alu 1 286 -26 37 18 0 18 chr1 121126581 121126621 -161067043 + AT_rich Low_complexity Low_complexity 14 54 0 1634 123 56 26 chr1 121126749 121127051 -161066613 - L1MB3 LINE L1 -7 6176 5866 444 251 51 63 chr1 121127256 121127431 -161066233 - MLT1K LTR MaLR -411 177 5 646 263 67 0 chr1 121127651 121127830 -161065834 + MIR SINE MIR 22 212 -50 518 343 47 0 chr1 121127851 121128023 -161065641 - MER91A DNA MER1_type -14 182 3 235 275 29 0 chr1 121128028 121128097 -161065567 - MIR SINE MIR -91 171 101 1785 174 0 0 chr1 121128327 121128620 -161065044 - AluJb SINE Alu -19 293 1 186 43 0 0 chr1 121128737 121128760 -161064904 + (T)n Simple_repeat Simple_repeat 1 23 0 2123 86 17 17 chr1 121129325 121129626 -161064038 - AluSq SINE Alu -12 301 1 422 261 65 39 chr1 121130080 121130233 -161063431 + MIR SINE MIR 46 202 -60 971 161 0 44 chr1 121130582 121130762 -161062902 + AluJb SINE Alu 133 304 -8 537 196 26 98 chr1 121130773 121130967 -161062697 - MER104 DNA MER2_type 0 180 1 2407 78 0 0 chr1 121131563 121131870 -161061794 + AluSg SINE Alu 1 307 -3 229 175 53 35 chr1 121133146 121133203 -161060461 + L2 LINE L2 3254 3311 -2 234 274 94 77 chr1 121133283 121133400 -161060264 - L2 LINE L2 -20 3252 3134 203 215 0 108 chr1 121133402 121133467 -161060197 - L2 LINE L2 0 3272 3215 1605 181 7 23 chr1 121133825 121134129 -161059535 - AluJo SINE Alu -10 302 4 284 347 157 0 chr1 121134137 121134258 -161059406 - L2 LINE L2 -607 2707 2568 1110 179 82 4 chr1 121134470 121134727 -161058937 - L1MB7 LINE L1 0 6184 5908 22 35 0 0 chr1 121134748 121134777 -161058887 + AT_rich Low_complexity Low_complexity 1 29 0 1695 157 14 14 chr1 121135440 121135734 -161057930 + AluJo SINE Alu 1 294 -18 2018 94 16 13 chr1 121135736 121136045 -161057619 + AluSq SINE Alu 2 311 -2 1950 110 3 29 chr1 121136166 121136345 -161057319 - AluSx SINE Alu -1 311 142 2384 60 3 0 chr1 121136345 121136646 -161057018 - AluY SINE Alu -9 302 1 1950 110 3 29 chr1 121136646 121136775 -161056889 - AluSx SINE Alu -170 142 11 634 333 28 0 chr1 121136936 121137113 -161056551 - MIR SINE MIR -35 227 46 719 269 149 53 chr1 121137934 121138038 -161055626 + L2 LINE L2 2588 2681 -632 1812 148 7 7 chr1 121138038 121138341 -161055323 - AluJb SINE Alu -9 303 1 719 269 149 53 chr1 121138341 121138884 -161054780 + L2 LINE L2 2681 3299 -14 448 260 57 17 chr1 121139160 121139337 -161054327 + MIR SINE MIR 79 262 0 2029 96 0 31 chr1 121139686 121139977 -161053687 - AluSx SINE Alu -26 286 5 275 297 27 0 chr1 121140095 121140169 -161053495 - L2 LINE L2 -31 3241 3166 258 148 22 0 chr1 121140176 121140236 -161053428 + L1ME3 LINE L1 5465 5525 -639 411 253 58 71 chr1 121140343 121140568 -161053096 + L1ME3 LINE L1 5727 5948 -214 340 304 112 51 chr1 121140892 121141246 -161052418 - L2 LINE L2 -217 3055 2622 394 280 148 11 chr1 121141445 121141640 -161052024 + MIR SINE MIR 28 252 -10 2085 99 0 14 chr1 121141655 121141947 -161051717 + AluSx SINE Alu 6 293 -19 2410 72 0 7 chr1 121143198 121143505 -161050159 + AluSp SINE Alu 2 306 -7 1658 118 8 23 chr1 121144400 121144663 -161049001 - AluJo SINE Alu -15 297 39 851 191 0 0 chr1 121144670 121144827 -161048837 + AluJb SINE Alu 156 312 0 804 152 20 123 chr1 121144833 121145037 -161048627 - L2 LINE L2 -6 3307 3125 2339 69 0 0 chr1 121145108 121145399 -161048265 - AluY SINE Alu -20 291 1 826 159 0 8 chr1 121145411 121145543 -161048121 - FLAM_C SINE Alu -10 133 3 2134 101 6 25 chr1 121145569 121145885 -161047779 - AluSq SINE Alu -3 310 1 1921 148 3 0 chr1 121146206 121146504 -161047160 + AluSx SINE Alu 1 299 -13 2037 90 4 7 chr1 121146949 121147228 -161046436 + AluSq SINE Alu 21 298 -15 1519 135 135 33 chr1 121147407 121147681 -161045983 + AluJb SINE Alu 1 302 0 859 207 0 24 chr1 121148049 121148213 -161045451 + FRAM SINE Alu 1 159 -17 2127 109 10 0 chr1 121148213 121148507 -161045157 + AluSg SINE Alu 1 297 -13 837 247 74 102 chr1 121148539 121148638 -161045026 + L1ME LINE L1 194 294 -5776 1735 158 4 0 chr1 121148638 121148917 -161044747 + AluJb SINE Alu 12 291 -21 837 247 74 102 chr1 121148917 121149546 -161044118 + L1ME LINE L1 294 902 -5168 283 289 40 0 chr1 121149548 121149624 -161044040 + FRAM SINE Alu 74 152 -14 1111 159 11 11 chr1 121149713 121149902 -161043762 + AluJb SINE Alu 87 275 -37 21 0 0 0 chr1 121150109 121150130 -161043534 + AT_rich Low_complexity Low_complexity 1 21 0 1986 121 0 7 chr1 121150257 121150554 -161043110 - AluSx SINE Alu -17 295 1 2050 88 46 0 chr1 121150673 121150957 -161042707 + AluSq SINE Alu 2 298 -15 1900 159 3 0 chr1 121151037 121151345 -161042319 + AluJb SINE Alu 1 309 -3 1375 157 8 32 chr1 121151350 121151599 -161042065 + AluJb SINE Alu 59 301 -11 1846 107 48 7 chr1 121151617 121151906 -161041758 + AluSx SINE Alu 1 301 -11 341 173 0 0 chr1 121151906 121151958 -161041706 + Alu SINE Alu 2 53 -255 1066 139 60 74 chr1 121151975 121152190 -161041474 + MER20 DNA MER1_type 8 219 0 769 165 0 16 chr1 121152471 121152598 -161041066 + FLAM_C SINE Alu 5 129 -4 21 0 0 0 chr1 121152609 121152630 -161041034 + AT_rich Low_complexity Low_complexity 1 21 0 2237 64 0 79 chr1 121152737 121153066 -161040598 - AluY SINE Alu -8 303 1 207 100 0 0 chr1 121153327 121153357 -161040307 + (TTG)n Simple_repeat Simple_repeat 1 30 0 627 165 0 0 chr1 121153390 121153487 -161040177 - AluSp/q SINE Alu -12 301 205 339 221 93 58 chr1 121153666 121153750 -161039914 + L1ME LINE L1 5601 5681 -440 2123 130 0 0 chr1 121153750 121154050 -161039614 + AluSx SINE Alu 1 300 -12 339 221 93 58 chr1 121154050 121154137 -161039527 + L1ME LINE L1 5681 5778 -343 1256 121 0 0 chr1 121154159 121154332 -161039332 - AluSx SINE Alu -139 173 1 1333 205 0 11 chr1 121154378 121154656 -161039008 - AluSx SINE Alu -37 275 1 23 0 0 53 chr1 121154846 121154867 -161038797 + AT_rich Low_complexity Low_complexity 1 22 -14 2256 60 3 0 chr1 121154867 121155170 -161038494 + AluY SINE Alu 1 304 0 23 0 0 53 chr1 121155170 121155185 -161038479 + AT_rich Low_complexity Low_complexity 22 36 0 729 247 68 4 chr1 121155627 121155862 -161037802 + L1MC5 LINE L1 7668 7917 -44 180 324 59 0 chr1 121155940 121156008 -161037656 - L2 LINE L2 0 3313 3242 1627 181 3 7 chr1 121156114 121156418 -161037246 + AluJo SINE Alu 1 303 -9 201 268 42 14 chr1 121156529 121156600 -161037064 - MIR3 SINE MIR -8 200 128 822 179 12 24 chr1 121156791 121156959 -161036705 + FRAM SINE Alu 2 167 -9 1709 161 24 3 chr1 121157099 121157397 -161036267 + AluJb SINE Alu 1 304 -8 2242 106 0 6 chr1 121157397 121157709 -161035955 + AluSg SINE Alu 1 310 0 1792 157 0 13 chr1 121157991 121158290 -161035374 - AluJo SINE Alu -13 299 5 411 121 45 0 chr1 121158436 121158502 -161035162 - MER66B LTR ERV1 -140 346 278 2094 99 7 3 chr1 121159005 121159298 -161034366 - AluSx SINE Alu -18 294 1 2083 116 0 0 chr1 121159471 121159764 -161033900 - AluSg SINE Alu -17 293 1 252 108 0 27 chr1 121159789 121159826 -161033838 + Alu SINE Alu 22 57 -246 1122 163 14 9 chr1 121160125 121160340 -161033324 - AluJb SINE Alu -10 302 87 296 276 40 0 chr1 121160429 121160505 -161033159 - FRAM SINE Alu -14 152 74 818 250 74 102 chr1 121160507 121161136 -161032528 - L1ME LINE L1 -5168 902 294 1735 158 4 0 chr1 121161136 121161415 -161032249 - AluJb SINE Alu -21 291 12 818 250 74 102 chr1 121161415 121161514 -161032150 - L1ME LINE L1 -5776 294 194 2119 104 10 0 chr1 121161546 121161835 -161031829 - AluSg SINE Alu -12 298 7 194 158 0 26 chr1 121162041 121162079 -161031585 + MIR SINE MIR 25 61 -147 2223 93 7 0 chr1 121162102 121162404 -161031260 + AluSx SINE Alu 1 304 -8 204 227 13 40 chr1 121164335 121164410 -161029254 + (TCCG)n Simple_repeat Simple_repeat 2 74 0 322 111 0 28 chr1 121164575 121164647 -161029017 + (CGGGG)n Simple_repeat Simple_repeat 3 72 0 2202 77 0 10 chr1 121165204 121165502 -161028162 + AluSx SINE Alu 1 295 -17 2311 194 76 45 chr1 121165733 121166368 -161027296 + MER21B LTR ERV1 126 819 -44 193 28 0 56 chr1 121166370 121166406 -161027258 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 2051 131 3 0 chr1 121166950 121167247 -161026417 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr1 121167421 121167442 -161026222 + AT_rich Low_complexity Low_complexity 1 21 0 246 254 34 0 chr1 121167703 121167762 -161025902 - MIR3 SINE MIR -47 161 101 198 343 40 20 chr1 121167892 121167991 -161025673 + L2 LINE L2 3169 3269 -3 275 231 160 106 chr1 121168285 121168422 -161025242 + L2 LINE L2 2707 2835 -479 222 37 0 0 chr1 121168422 121168449 -161025215 + (TG)n Simple_repeat Simple_repeat 1 27 0 1400 174 3 44 chr1 121168449 121168742 -161024922 - AluJb SINE Alu -31 281 1 275 231 160 106 chr1 121168742 121168859 -161024805 + L2 LINE L2 2834 2976 -338 402 136 0 0 chr1 121169231 121169290 -161024374 - Tigger7 DNA MER2_type -40 2451 2393 * 1468 208 4 0 chr1 121169288 121169553 -161024111 - Tigger7 DNA MER2_type -2220 267 2 185 308 75 28 chr1 121170020 121170127 -161023537 - L2 LINE L2 -354 2959 2848 350 262 20 54 chr1 121170144 121170293 -161023371 + MIR SINE MIR 87 230 -32 836 174 0 42 chr1 121170570 121170737 -161022927 - AluJo SINE Alu -13 299 140 283 130 22 0 chr1 121170737 121170783 -161022881 + U7 snRNA snRNA 13 59 -4 1657 152 65 0 chr1 121171035 121171325 -161022339 + AluJb SINE Alu 2 310 -2 186 43 0 0 chr1 121172029 121172052 -161021612 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2097 122 3 0 chr1 121172267 121172570 -161021094 + AluSx SINE Alu 1 304 -8 580 128 21 0 chr1 121172600 121172694 -161020970 + L1MB8 LINE L1 6082 6177 -1 651 175 143 0 chr1 121173666 121173792 -161019872 - AluJo SINE Alu -167 145 2 1850 154 3 0 chr1 121174358 121174650 -161019014 + AluJb SINE Alu 1 293 -19 2521 45 0 13 chr1 121174675 121174985 -161018679 - AluY SINE Alu -5 306 1 2143 99 7 0 chr1 121175840 121176134 -161017530 + AluSq SINE Alu 1 296 -17 1980 107 0 24 chr1 121176160 121176469 -161017195 + AluSx SINE Alu 1 302 0 1791 141 0 0 chr1 121176473 121176750 -161016914 - AluJo SINE Alu -23 289 13 521 238 99 17 chr1 121179500 121179672 -161013992 - MIR SINE MIR -70 192 7 267 31 0 0 chr1 121180859 121180891 -161012773 + (CA)n Simple_repeat Simple_repeat 2 33 0 1626 158 65 14 chr1 121181268 121181560 -161012104 - AluJo SINE Alu -5 307 1 2179 103 0 0 chr1 121181599 121181891 -161011773 + AluSc SINE Alu 1 292 -17 2115 107 3 0 chr1 121182414 121182704 -161010960 - AluSx SINE Alu -21 291 1 2216 82 0 3 chr1 121183073 121183366 -161010298 - AluY SINE Alu -19 292 1 185 83 28 0 chr1 121183429 121183465 -161010199 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 2203 70 3 7 chr1 121183467 121183751 -161009913 - AluSp SINE Alu -29 284 2 888 215 0 0 chr1 121185035 121185207 -161008457 - FRAM SINE Alu -4 172 1 391 223 54 20 chr1 121186262 121186410 -161007254 + L1ME4a LINE L1 5952 6104 -17 280 277 170 0 chr1 121187339 121187433 -161006231 + MIR SINE MIR 57 166 -96 507 276 164 0 chr1 121187514 121187666 -161005998 + MER5A DNA MER1_type 11 187 -2 456 289 67 44 chr1 121188237 121188417 -161005247 - MIR3 SINE MIR -24 184 1 186 118 0 0 chr1 121188420 121188454 -161005210 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr1 121188582 121188607 -161005057 + AT_rich Low_complexity Low_complexity 1 25 0 374 255 47 9 chr1 121190513 121190619 -161003045 + L2 LINE L2 3201 3310 -3 1107 192 113 56 chr1 121192306 121192696 -161000968 + L2 LINE L2 2895 3306 -7 470 248 62 93 chr1 121192701 121192959 -161000705 + L2 LINE L2 3021 3270 -2 2102 102 3 0 chr1 121194203 121194487 -160999177 - AluSp SINE Alu -28 285 1 759 150 0 0 chr1 121194499 121194619 -160999045 - FRAM SINE Alu -9 167 48 1650 127 73 0 chr1 121194678 121194937 -160998727 + AluJo SINE Alu 2 279 -33 872 97 0 8 chr1 121194938 121195072 -160998592 + (GGAA)n Simple_repeat Simple_repeat 4 136 0 22 35 0 0 chr1 121195182 121195211 -160998453 + AT_rich Low_complexity Low_complexity 1 29 0 845 138 0 43 chr1 121195246 121195384 -160998280 - FLAM_C SINE Alu 0 133 2 691 238 6 37 chr1 121195680 121195703 -160997961 + MIR SINE MIR 2 24 -238 2543 43 0 0 chr1 121195703 121196003 -160997661 - AluY SINE Alu -11 300 1 691 238 6 37 chr1 121196003 121196143 -160997521 + MIR SINE MIR 24 160 -102 2067 120 0 0 chr1 121196225 121196530 -160997134 - AluSg SINE Alu 0 305 1 1631 149 11 4 chr1 121197593 121197885 -160995779 - AluJo SINE Alu 0 306 13 1071 198 41 62 chr1 121197964 121198060 -160995604 - MIR SINE MIR -24 238 142 879 177 6 19 chr1 121198060 121198218 -160995446 - FRAM SINE Alu -10 156 1 1071 198 41 62 chr1 121198218 121198364 -160995300 - MIR SINE MIR -120 142 1 298 320 94 62 chr1 121198495 121198660 -160995004 + L2 LINE L2 2557 2715 -599 2072 110 14 0 chr1 121198660 121198951 -160994713 - AluSq SINE Alu -18 295 1 298 320 94 62 chr1 121198951 121199126 -160994538 + L2 LINE L2 2715 2908 -406 2148 96 0 25 chr1 121199146 121199460 -160994204 - AluSx SINE Alu -6 306 1 2158 112 7 0 chr1 121199600 121199896 -160993768 - AluSx SINE Alu -14 298 1 265 250 26 13 chr1 121200007 121200083 -160993581 + L2 LINE L2 3195 3271 -1 2228 105 0 3 chr1 121200268 121200582 -160993082 + AluSq SINE Alu 1 313 0 8086 42 13 9 chr1 121200947 121201972 -160991692 + SVA Other Other 356 1384 -2 2240 98 3 0 chr1 121202727 121203032 -160990632 - AluSx SINE Alu -6 306 1 1505 176 46 0 chr1 121203035 121203319 -160990345 - AluJb SINE Alu -15 297 1 968 300 31 8 chr1 121203366 121203756 -160989908 - L1ME3A LINE L1 -219 5951 5553 1909 130 78 35 chr1 121203815 121203951 -160989713 + MLT1A1 LTR MaLR 3 132 -233 1868 139 4 0 chr1 121203951 121204265 -160989399 + AluSx SINE Alu 1 315 0 1909 130 78 35 chr1 121204265 121204472 -160989192 + MLT1A1 LTR MaLR 132 362 -3 1958 97 45 10 chr1 121204980 121205269 -160988395 - AluSq SINE Alu -14 299 1 268 163 0 0 chr1 121205364 121205407 -160988257 - FRAM/FAM SINE Alu -80 86 44 2205 104 0 0 chr1 121205609 121205907 -160987757 - AluSg SINE Alu -12 298 1 1418 143 132 23 chr1 121205908 121206174 -160987490 - AluSg SINE Alu -15 295 1 180 0 0 0 chr1 121206192 121206212 -160987452 + (A)n Simple_repeat Simple_repeat 1 20 0 1416 213 0 7 chr1 121206212 121206508 -160987156 + AluJo SINE Alu 1 294 -18 1681 142 82 0 chr1 121206510 121206778 -160986886 + AluJb SINE Alu 1 290 -22 505 226 113 6 chr1 121206790 121206949 -160986715 - MLT1H LTR MaLR 0 549 374 229 235 71 12 chr1 121207002 121207087 -160986577 - MLT1H LTR MaLR -458 91 2 275 269 59 110 chr1 121207488 121207644 -160986020 - L1ME4a LINE L1 -51 6070 5908 1971 119 3 14 chr1 121207644 121207937 -160985727 - AluSx SINE Alu -22 290 1 275 269 59 110 chr1 121207937 121208061 -160985603 - L1ME4a LINE L1 -213 5908 5779 968 201 6 0 chr1 121208061 121208230 -160985434 - FAM SINE Alu -5 170 1 275 269 59 110 chr1 121208230 121208558 -160985106 - L1ME4a LINE L1 -342 5779 5492 1991 128 0 14 chr1 121208768 121209064 -160984600 - AluSx SINE Alu -20 292 1 859 113 0 35 chr1 121209066 121209207 -160984457 - AluSq/x SINE Alu -177 136 1 1988 78 37 0 chr1 121209215 121209519 -160984145 - AluSc SINE Alu 0 314 1 183 301 131 20 chr1 121209940 121210093 -160983571 - L2 LINE L2 -178 3135 2966 233 147 0 0 chr1 121210175 121210209 -160983455 + Alu SINE Alu 1 34 -267 360 247 0 22 chr1 121210210 121210299 -160983365 - HAL1b LINE L1 -16 1332 1246 1989 133 0 0 chr1 121210313 121210606 -160983058 - AluSx SINE Alu -19 293 1 2188 119 0 3 chr1 121211039 121211349 -160982315 - AluSc SINE Alu 0 309 1 1701 166 16 3 chr1 121211391 121211699 -160981965 - AluJb SINE Alu 0 312 1 1837 147 7 10 chr1 121211702 121212008 -160981656 - AluSx SINE Alu -7 305 1 328 314 45 106 chr1 121212359 121212623 -160981041 - L3 LINE CR1 -22 1555 1308 2202 85 0 16 chr1 121213062 121213379 -160980285 + AluSx SINE Alu 1 312 0 1759 226 82 5 chr1 121213666 121214095 -160979569 - MLT1C LTR MaLR 0 467 6 34 0 0 0 chr1 121214313 121214347 -160979317 + AT_rich Low_complexity Low_complexity 1 34 0 739 165 8 30 chr1 121214347 121214480 -160979184 - FLAM_C SINE Alu -12 131 2 459 88 0 0 chr1 121214618 121214686 -160978978 - MLT1F1 LTR MaLR -4 563 496 790 184 0 0 chr1 121214692 121214817 -160978847 + FLAM_A SINE Alu 1 125 -17 1903 220 53 7 chr1 121214821 121215258 -160978406 - MLT1F LTR MaLR -60 482 34 369 314 65 0 chr1 121215349 121215473 -160978191 - L2 LINE L2 0 3272 3141 1995 131 0 0 chr1 121215991 121216281 -160977383 - AluSg SINE Alu -20 290 1 302 300 174 34 chr1 121216301 121216651 -160977013 - L2 LINE L2 -108 3205 2807 21 0 0 0 chr1 121216740 121216761 -160976903 + AT_rich Low_complexity Low_complexity 1 21 0 1836 165 0 0 chr1 121216786 121217077 -160976587 + AluJb SINE Alu 4 294 -18 698 191 9 129 chr1 121218958 121219077 -160974587 - MER5A DNA MER1_type -4 185 100 1998 107 10 13 chr1 121219077 121219377 -160974287 - AluSg SINE Alu -11 299 1 698 191 9 129 chr1 121219377 121219467 -160974197 - MER5A DNA MER1_type -89 100 1 430 299 32 32 chr1 121219483 121219637 -160974027 + MIR SINE MIR 20 173 -89 2082 190 50 28 chr1 121219939 121220396 -160973268 + MLT1C LTR MaLR 1 467 0 30 16 0 48 chr1 121221016 121221040 -160972624 + AT_rich Low_complexity Low_complexity 1 25 -35 2079 128 0 0 chr1 121221040 121221338 -160972326 - AluSx SINE Alu -14 298 1 30 16 0 48 chr1 121221338 121221354 -160972310 + AT_rich Low_complexity Low_complexity 25 40 -20 2256 60 3 3 chr1 121221354 121221662 -160972002 - AluSp SINE Alu 0 308 1 30 16 0 48 chr1 121221662 121221682 -160971982 + AT_rich Low_complexity Low_complexity 40 60 0 216 0 0 0 chr1 121222404 121222428 -160971236 + (CAG)n Simple_repeat Simple_repeat 1 24 0 703 58 0 0 chr1 121222602 121222689 -160970975 + AluSp/q SINE Alu 218 304 -9 23 68 0 0 chr1 121222709 121222753 -160970911 + AT_rich Low_complexity Low_complexity 1 44 0 1763 157 33 0 chr1 121222903 121223202 -160970462 + AluJb SINE Alu 1 309 -3 1770 148 31 0 chr1 121223606 121223897 -160969767 - AluJb SINE Alu -12 300 1 180 0 0 0 chr1 121223933 121223953 -160969711 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 322 293 13 0 chr1 121224000 121224075 -160969589 - MER91C DNA MER1_type -63 77 2 526 336 139 17 chr1 121224164 121224524 -160969140 - L2 LINE L2 -424 2890 2487 2141 120 0 0 chr1 121224677 121224986 -160968678 - AluSx SINE Alu -3 309 1 2199 76 7 3 chr1 121225104 121225393 -160968271 - AluY SINE Alu -21 290 1 1870 146 7 0 chr1 121225504 121225799 -160967865 - AluJb SINE Alu -15 297 1 271 314 183 7 chr1 121225847 121225984 -160967680 - L2 LINE L2 -962 2352 2192 220 216 0 0 chr1 121226021 121226072 -160967592 + A-rich Low_complexity Low_complexity 1 51 0 993 183 29 6 chr1 121226190 121226365 -160967299 + MER63A DNA MER1_type 1 179 -31 3732 154 11 29 chr1 121226471 121226790 -160966874 + L1MB7 LINE L1 5478 5801 -383 1954 139 7 0 chr1 121226790 121227084 -160966580 - AluSx SINE Alu -16 296 1 3732 154 11 29 chr1 121227084 121227464 -160966200 + L1MB7 LINE L1 5801 6165 -19 1719 150 39 0 chr1 121227513 121227793 -160965871 - AluJb SINE Alu -21 291 1 243 0 0 0 chr1 121227868 121227895 -160965769 + (TA)n Simple_repeat Simple_repeat 1 27 0 301 43 0 0 chr1 121227895 121227941 -160965723 - AluSp/q SINE Alu -3 300 255 3260 158 42 79 chr1 121228041 121229126 -160964538 + L1MA9 LINE L1 3583 4600 -1546 387 276 11 0 chr1 121229201 121229288 -160964376 - L2 LINE L2 -3 3310 3223 1228 186 65 11 chr1 121229295 121229558 -160964106 + AluJo SINE Alu 14 290 -22 5726 140 44 12 chr1 121229560 121229910 -160963754 + L1MA9 LINE L1 4606 4943 -1369 2037 126 0 0 chr1 121229910 121230204 -160963460 - AluSc SINE Alu -15 294 1 5726 140 44 12 chr1 121230204 121230843 -160962821 + L1MA9 LINE L1 4943 5560 -752 2087 122 0 3 chr1 121230843 121231147 -160962517 + AluSg SINE Alu 1 303 -7 5726 140 44 12 chr1 121231147 121231808 -160961856 + L1MA9 LINE L1 5560 6312 0 26 64 0 0 chr1 121231893 121231940 -160961724 + AT_rich Low_complexity Low_complexity 1 47 0 194 322 25 51 chr1 121232986 121233104 -160960560 - L3b LINE CR1 -345 1238 1124 2131 109 0 7 chr1 121233504 121233807 -160959857 + AluSq SINE Alu 1 301 -12 1991 110 17 3 chr1 121234210 121234521 -160959143 - AluSq SINE Alu 0 313 3 843 281 96 73 chr1 121234572 121234618 -160959046 - L2 LINE L2 0 3313 3270 1939 129 7 0 chr1 121234618 121234904 -160958760 - AluSx SINE Alu -22 290 3 843 281 96 73 chr1 121234904 121235381 -160958283 - L2 LINE L2 -43 3270 2778 23 0 0 0 chr1 121235412 121235435 -160958229 + AT_rich Low_complexity Low_complexity 1 23 0 2333 75 0 0 chr1 121235976 121236269 -160957395 - AluY SINE Alu -17 294 2 213 264 132 11 chr1 121236271 121236362 -160957302 + L2 LINE L2 2926 3027 -245 294 320 21 0 chr1 121236424 121236521 -160957143 - L2 LINE L2 -6 3307 3209 3528 197 33 27 chr1 121236521 121236960 -160956704 + L1MB4 LINE L1 5327 5775 -405 2218 104 7 0 chr1 121236960 121237268 -160956396 + AluSx SINE Alu 1 310 -2 3528 197 33 27 chr1 121237268 121237677 -160955987 + L1MB4 LINE L1 5775 6180 0 261 269 90 0 chr1 121238152 121238219 -160955445 + L2 LINE L2 3200 3272 0 1248 187 114 30 chr1 121238310 121238446 -160955218 - MER5C DNA MER1_type 0 324 201 2270 78 0 10 chr1 121238446 121238742 -160954922 - AluY SINE Alu -18 293 1 1248 187 114 30 chr1 121238742 121238904 -160954760 - MER5C DNA MER1_type -123 201 1 377 222 278 7 chr1 121240159 121240303 -160953361 + MIR SINE MIR 2 184 -78 2249 283 181 10 chr1 121240307 121240741 -160952923 + L2 LINE L2 1771 2130 -1183 1918 133 3 7 chr1 121240741 121241043 -160952621 - AluSx SINE Alu -11 301 1 2249 283 181 10 chr1 121241043 121241781 -160951883 + L2 LINE L2 2130 3151 -162 1828 150 0 4 chr1 121241792 121242059 -160951605 - AluJb SINE Alu -15 297 32 338 251 23 69 chr1 121242203 121242377 -160951287 - MIR SINE MIR -56 206 43 531 310 44 0 chr1 121242579 121242737 -160950927 + L2 LINE L2 3107 3271 -1 2185 123 0 0 chr1 121243080 121243372 -160950292 - AluSx SINE Alu -20 292 1 2295 66 11 7 chr1 121243382 121243696 -160949968 - AluY SINE Alu 0 311 1 1025 104 7 0 chr1 121245175 121245310 -160948354 + AluSq/x SINE Alu 1 136 -177 2273 121 0 6 chr1 121245310 121245623 -160948041 + AluSx SINE Alu 1 311 -1 1257 211 131 50 chr1 121245785 121246221 -160947443 + MLT1H LTR MaLR 79 549 0 456 254 87 16 chr1 121246258 121246384 -160947280 - MIR SINE MIR -107 155 21 615 199 35 0 chr1 121246594 121246735 -160946929 + MER105 DNA DNA 11 156 -48 2163 117 37 0 chr1 121247151 121247451 -160946213 - AluSx SINE Alu -1 311 1 2419 98 0 0 chr1 121252171 121252468 -160941196 + AluSx SINE Alu 1 297 -15 1824 157 3 21 chr1 121305611 121305897 -160887767 - AluJo SINE Alu -31 281 1 211 232 14 14 chr1 121306639 121306708 -160886956 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 4347 122 56 32 chr1 121306960 121307497 -160886167 - L1PA16 LINE L1 -7 6159 5598 2411 35 42 3 chr1 121307497 121307786 -160885878 - AluY SINE Alu -11 300 1 4347 122 56 32 chr1 121307786 121307975 -160885689 - L1PA16 LINE L1 -568 5598 5415 684 287 52 34 chr1 121307975 121308289 -160885375 - L1MEc LINE L1 -4770 1626 1302 2060 52 78 4 chr1 121308289 121308559 -160885105 - AluY SINE Alu -14 297 8 684 287 52 34 chr1 121308559 121308652 -160885012 - L1MEc LINE L1 -5094 1302 1212 3676 214 45 63 chr1 121308742 121308862 -160884802 - L1MEc LINE L1 -5207 1189 1068 2011 133 4 0 chr1 121308862 121309166 -160884498 - AluSx SINE Alu 0 309 5 3676 214 45 63 chr1 121309166 121309228 -160884436 - L1MEc LINE L1 -5328 1068 1006 2029 116 9 56 chr1 121309228 121309547 -160884117 - AluSq SINE Alu 0 313 10 3676 214 45 63 chr1 121309547 121309748 -160883916 - L1MEc LINE L1 -5390 1006 803 1842 151 0 24 chr1 121309748 121310040 -160883624 - AluJo SINE Alu -22 290 6 3676 214 45 63 chr1 121310040 121310765 -160882899 - L1MEc LINE L1 -5593 803 98 899 95 0 0 chr1 121310766 121310906 -160882758 - AluSg/x SINE Alu 0 305 166 2261 55 66 0 chr1 121310921 121311210 -160882454 - AluY SINE Alu -3 308 1 216 0 0 0 chr1 121311220 121311244 -160882420 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 436 152 0 0 chr1 121311247 121311313 -160882351 - L1MEc LINE L1 -6295 101 36 191 355 131 0 chr1 121311439 121311546 -160882118 - L2 LINE L2 -16 3256 3136 200 276 142 55 chr1 121313011 121313138 -160880526 - L2 LINE L2 -2 3270 3133 305 244 71 0 chr1 121313425 121313552 -160880112 + L1ME4a LINE L1 5983 6118 -3 207 100 0 0 chr1 121313696 121313726 -160879938 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2145 99 0 7 chr1 121314525 121314808 -160878856 - AluSq SINE Alu -32 281 1 2399 98 0 0 chr1 121315529 121315834 -160877830 - AluSx SINE Alu -7 305 1 1838 128 21 7 chr1 121316586 121316896 -160876768 - AluJb SINE Alu 0 314 1 1774 147 10 23 chr1 121316922 121317221 -160876443 - AluJb SINE Alu -17 295 1 402 281 88 0 chr1 121318083 121318197 -160875467 + L2 LINE L2 3190 3313 0 23 0 0 0 chr1 121318230 121318253 -160875411 + AT_rich Low_complexity Low_complexity 1 23 0 1039 165 6 0 chr1 121318456 121318620 -160875044 + AluJb SINE Alu 130 294 -18 482 250 70 0 chr1 121318862 121318990 -160874674 + MIR SINE MIR 46 182 -80 230 227 113 21 chr1 121319299 121319396 -160874268 - L1ME LINE L1 -341 5780 5675 180 219 0 0 chr1 121320324 121320365 -160873299 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 244 209 0 0 chr1 121320370 121320413 -160873251 + L1MC4 LINE L1 6659 6701 -1341 3222 219 6 30 chr1 121321480 121322145 -160871519 + MER82 DNA MER2_type 1 649 -4 2977 201 21 10 chr1 121322267 121322850 -160870814 + MLT-int LTR MaLR 74 662 -1073 291 290 0 70 chr1 121323113 121323213 -160870451 + MLT-int LTR MaLR 1288 1380 -355 1730 166 3 18 chr1 121323213 121323497 -160870167 + AluJo SINE Alu 1 280 -32 1253 167 0 5 chr1 121323501 121323705 -160869959 - AluJb SINE Alu -17 295 93 2001 138 33 24 chr1 121323783 121324050 -160869614 + MLT1A1-int LTR MaLR 1386 1658 -77 2288 121 0 0 chr1 121324050 121324356 -160869308 + AluSp SINE Alu 1 306 -7 2001 138 33 24 chr1 121324356 121324421 -160869243 + MLT1A1-int LTR MaLR 1658 1721 -14 2083 178 3 8 chr1 121324464 121324819 -160868845 + MLT1A1 LTR MaLR 10 362 -3 2433 80 0 0 chr1 121324976 121325276 -160868388 - AluSg1 SINE Alu -9 300 1 496 162 0 0 chr1 121325449 121325523 -160868141 + AluJ/FLAM SINE Alu 14 87 -225 452 317 67 18 chr1 121326304 121326468 -160867196 + MIR3 SINE MIR 30 201 -7 1913 189 42 3 chr1 121326518 121326852 -160866812 - MER7A DNA MER2_type 0 346 2 1208 170 13 45 chr1 121327515 121327678 -160865986 - MER20 DNA MER1_type -2 217 61 1890 146 17 3 chr1 121327678 121327972 -160865692 + AluJb SINE Alu 1 298 -14 1208 170 13 45 chr1 121327972 121328032 -160865632 - MER20 DNA MER1_type -158 61 1 23 0 0 0 chr1 121328598 121328621 -160865043 + AT_rich Low_complexity Low_complexity 1 23 0 1719 144 19 4 chr1 121328633 121328903 -160864761 - AluJb SINE Alu -35 277 4 335 295 58 14 chr1 121330165 121330304 -160863360 + MER5A DNA MER1_type 45 189 0 2356 93 0 6 chr1 121330492 121330805 -160862859 - AluSq SINE Alu -2 311 1 192 320 49 16 chr1 121331373 121331495 -160862169 + L2 LINE L2 1932 2057 -1257 419 335 72 69 chr1 121331523 121331843 -160861821 + L2 LINE L2 2170 2488 -826 396 0 0 0 chr1 121331843 121331887 -160861777 + (CA)n Simple_repeat Simple_repeat 2 45 0 419 335 72 69 chr1 121331887 121332234 -160861430 + L2 LINE L2 2488 2839 -475 397 335 64 55 chr1 121332298 121332659 -160861005 + L2 LINE L2 2897 3260 -12 265 333 26 26 chr1 121333000 121333117 -160860547 - L2 LINE L2 -22 3250 3134 228 271 172 16 chr1 121333434 121333556 -160860108 + MIR3 SINE MIR 6 146 -62 1805 174 0 20 chr1 121334069 121334368 -160859296 - AluJo SINE Alu -19 293 1 2183 106 0 7 chr1 121334494 121334787 -160858877 - AluSg SINE Alu -17 293 3 875 194 48 0 chr1 121334867 121335032 -160858632 - AluJb SINE Alu -13 299 127 1682 178 7 26 chr1 121335060 121335364 -160858300 + AluJo SINE Alu 1 298 -14 1000 161 39 39 chr1 121335880 121336060 -160857604 - MER20 DNA MER1_type 0 219 40 403 196 143 58 chr1 121336753 121336877 -160856787 - L2 LINE L2 0 3313 3166 746 206 0 22 chr1 121336877 121337013 -160856651 + FLAM_A SINE Alu 1 133 0 403 196 143 58 chr1 121337013 121337077 -160856587 - L2 LINE L2 -147 3166 3109 2494 60 0 0 chr1 121337088 121337386 -160856278 - AluY SINE Alu -10 301 4 2297 89 0 7 chr1 121337521 121337823 -160855841 - AluY SINE Alu -11 300 1 2233 111 0 13 chr1 121338314 121338620 -160855044 - AluSx SINE Alu -10 302 1 2148 278 169 17 chr1 121338718 121338856 -160854808 - L2 LINE L2 -16 3297 3181 1978 151 0 3 chr1 121338856 121339148 -160854516 + AluJb SINE Alu 1 291 -21 2148 278 169 17 chr1 121339148 121339903 -160853761 - L2 LINE L2 -132 3181 2542 2026 133 3 7 chr1 121339903 121340205 -160853459 + AluSx SINE Alu 1 301 -11 2148 278 169 17 chr1 121340205 121340639 -160853025 - L2 LINE L2 -771 2542 1771 362 222 278 7 chr1 121340643 121340787 -160852877 - MIR SINE MIR -78 184 2 1190 187 117 33 chr1 121342042 121342204 -160851460 + MER5C DNA MER1_type 1 148 -176 2378 78 0 10 chr1 121342204 121342500 -160851164 + AluY SINE Alu 1 293 -18 1190 187 117 33 chr1 121342500 121342636 -160851028 + MER5C DNA MER1_type 148 324 0 266 254 84 14 chr1 121342727 121342798 -160850866 - L2 LINE L2 0 3272 3197 1590 179 37 25 chr1 121343269 121343677 -160849987 - L1MB4 LINE L1 0 6180 5768 2030 145 23 0 chr1 121343678 121343981 -160849683 - AluSx SINE Alu -2 310 1 2344 89 26 0 chr1 121344127 121344430 -160849234 - AluY SINE Alu 0 311 1 1540 70 14 0 chr1 121344547 121344761 -160848903 - L1PB1 LINE L1 -8 6143 5927 2936 143 75 40 chr1 121344761 121345064 -160848600 + MER4D LTR ERV1 309 600 -303 2446 84 0 0 chr1 121345064 121345363 -160848301 - AluY SINE Alu -11 300 2 2936 143 75 40 chr1 121345363 121345634 -160848030 + MER4D LTR ERV1 600 903 0 2402 95 3 3 chr1 121345990 121346294 -160847370 - AluSx SINE Alu -8 304 1 1858 157 21 0 chr1 121348251 121348537 -160845127 - AluJo SINE Alu -11 301 10 181 243 0 0 chr1 121348560 121348597 -160845067 + L2 LINE L2 3261 3297 -16 2271 86 0 57 chr1 121348661 121348975 -160844689 + AluSg SINE Alu 1 296 -14 3112 116 11 2 chr1 121352944 121353418 -160840246 - MER41B LTR ERV1 -157 478 1 205 245 0 20 chr1 121354793 121354842 -160838822 + GA-rich Low_complexity Low_complexity 2 49 0 212 244 0 0 chr1 121355580 121355625 -160838039 + (CA)n Simple_repeat Simple_repeat 1 45 0 1711 127 4 0 chr1 121357661 121357905 -160835759 + AluY SINE Alu 66 310 -1 615 199 35 0 chr1 121358321 121358462 -160835202 - MER105 DNA DNA -48 156 11 420 244 109 3 chr1 121358655 121358785 -160834879 + MIR SINE MIR 3 143 -65 1258 210 131 46 chr1 121358838 121359272 -160834392 - MLT1H LTR MaLR 0 549 79 2255 125 0 6 chr1 121359434 121359747 -160833917 - AluSx SINE Alu -1 311 1 1025 104 7 0 chr1 121359747 121359882 -160833782 - AluSq/x SINE Alu -176 136 1 2325 63 11 7 chr1 121361361 121361671 -160831993 + AluY SINE Alu 1 311 0 2501 70 0 0 chr1 121361681 121361981 -160831683 + AluY SINE Alu 1 300 -11 2428 123 43 10 chr1 121361981 121362380 -160831284 + MER41B LTR ERV1 221 632 -3 554 255 7 33 chr1 121362547 121362700 -160830964 + MIR SINE MIR 108 256 -6 2381 103 3 3 chr1 121364241 121364553 -160829111 + AluSp SINE Alu 1 312 -1 2294 103 0 7 chr1 121364563 121364863 -160828801 + AluSx SINE Alu 1 298 -14 877 138 0 0 chr1 121370671 121370801 -160822863 - FLAM_C SINE Alu -3 130 1 2008 119 0 40 chr1 121371101 121371403 -160822261 - AluSx SINE Alu -22 290 1 185 246 15 46 chr1 121371932 121371997 -160821667 + L3 LINE CR1 1507 1569 -8 2059 116 0 36 chr1 121372697 121372998 -160820666 - AluSg SINE Alu -20 290 1 22 56 0 0 chr1 121373151 121373187 -160820477 + AT_rich Low_complexity Low_complexity 1 36 0 2326 94 10 13 chr1 121373797 121374105 -160819559 - AluSx SINE Alu -5 307 1 1693 162 0 84 chr1 121374258 121374588 -160819076 + AluSp SINE Alu 1 304 0 1899 156 17 17 chr1 121374617 121374918 -160818746 - AluJb SINE Alu -11 301 1 308 333 12 0 chr1 121374972 121375056 -160818608 + L1MC4 LINE L1 6619 6703 -1339 305 185 0 19 chr1 121375008 121375062 -160818602 - L1MC4 LINE L1 -1339 6703 6651 * 615 224 93 63 chr1 121375383 121375651 -160818013 + L2 LINE L2 606 881 -2433 482 239 124 0 chr1 121375840 121375953 -160817711 + MLT1J2 LTR MaLR 207 333 -117 1541 278 53 14 chr1 121376046 121376536 -160817128 + L2 LINE L2 883 1391 -1923 1447 261 119 20 chr1 121376546 121377162 -160816502 + L2 LINE L2 2655 3311 -2 225 132 0 0 chr1 121377162 121377200 -160816464 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 193 171 49 0 chr1 121377877 121377918 -160815746 - L3 LINE CR1 -28 1549 1507 298 259 204 9 chr1 121378055 121378163 -160815501 - MIR3 SINE MIR -48 160 32 477 258 61 6 chr1 121378758 121378921 -160814743 - MIR SINE MIR -62 200 29 723 234 78 0 chr1 121380430 121380635 -160813029 + MIR SINE MIR 42 262 0 252 304 102 53 chr1 121380735 121380926 -160812738 + MIR SINE MIR 37 235 -27 351 202 60 0 chr1 121381047 121381131 -160812533 - L1MC1 LINE L1 -1 6332 6244 285 339 21 26 chr1 121381572 121381703 -160811961 - MER5A DNA MER1_type -42 141 4 180 176 0 0 chr1 121383024 121383058 -160810606 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr1 121388108 121388136 -160805528 + AT_rich Low_complexity Low_complexity 1 28 0 2054 141 0 22 chr1 121388619 121388931 -160804733 - AluJb SINE Alu -6 306 2 2035 124 3 49 chr1 121389096 121389402 -160804262 - AluSx SINE Alu -20 292 1 577 218 92 7 chr1 121390197 121390339 -160803325 - MER3 DNA MER1_type -54 155 2 2241 99 7 0 chr1 121391026 121391320 -160802344 - AluSg SINE Alu -14 296 1 1576 192 55 0 chr1 121391539 121391810 -160801854 - AluJb SINE Alu -21 291 6 910 162 15 0 chr1 121391812 121391948 -160801716 - AluJb SINE Alu -174 138 1 2434 100 3 3 chr1 121392455 121392766 -160800898 + AluSx SINE Alu 1 311 -1 196 309 167 43 chr1 121393015 121393297 -160800367 + L2 LINE L2 2149 2465 -849 243 284 15 0 chr1 121393442 121393509 -160800155 + L2 LINE L2 2987 3054 -218 212 234 21 0 chr1 121393851 121393898 -160799766 + MIR SINE MIR 28 75 -187 320 209 45 0 chr1 121393935 121394002 -160799662 + MIR SINE MIR 192 261 -1 305 348 115 52 chr1 121394033 121394320 -160799344 - L2 LINE L2 -98 3174 2870 993 130 0 0 chr1 121394977 121395108 -160798556 - FLAM_C SINE Alu -2 131 1 1956 116 0 40 chr1 121395408 121395710 -160797954 - AluSx SINE Alu -22 290 1 195 246 15 46 chr1 121396239 121396304 -160797360 + L3 LINE CR1 1507 1569 -8 2054 119 0 33 chr1 121397003 121397306 -160796358 - AluSg SINE Alu -17 293 1 587 116 151 7 chr1 121397435 121397581 -160796083 + Charlie5 DNA MER1_type 2457 2623 0 2193 104 10 16 chr1 121398102 121398411 -160795253 - AluSx SINE Alu -5 307 1 1664 139 41 0 chr1 121398412 121398678 -160794986 - MLT-int LTR MaLR -73 1662 1386 1253 167 0 5 chr1 121398756 121398960 -160794704 + AluJb SINE Alu 93 295 -17 1730 166 3 18 chr1 121398964 121399248 -160794416 - AluJo SINE Alu -32 280 1 291 290 0 70 chr1 121399248 121399348 -160794316 - MLT-int LTR MaLR -355 1380 1288 2977 201 21 10 chr1 121399611 121400194 -160793470 - MLT-int LTR MaLR -1073 662 74 3222 219 6 30 chr1 121400316 121400981 -160792683 - MER82 DNA MER2_type -4 649 1 244 209 0 0 chr1 121402048 121402091 -160791573 - L1MC4 LINE L1 -1341 6701 6659 180 219 0 0 chr1 121402096 121402137 -160791527 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 230 227 113 21 chr1 121403065 121403162 -160790502 + L1ME LINE L1 5675 5780 -341 482 250 70 0 chr1 121403471 121403599 -160790065 - MIR SINE MIR -80 182 46 1039 165 6 0 chr1 121403841 121404005 -160789659 - AluJb SINE Alu -18 294 130 23 0 0 0 chr1 121404208 121404231 -160789433 + AT_rich Low_complexity Low_complexity 1 23 0 402 281 88 0 chr1 121404264 121404378 -160789286 - L2 LINE L2 0 3313 3190 1774 147 10 23 chr1 121405236 121405535 -160788129 + AluJb SINE Alu 1 295 -17 1839 128 21 7 chr1 121405561 121405871 -160787793 + AluJb SINE Alu 1 314 0 2399 98 0 0 chr1 121406623 121406928 -160786736 + AluSx SINE Alu 1 305 -7 2145 99 0 7 chr1 121407649 121407932 -160785732 + AluSq SINE Alu 1 281 -32 207 100 0 0 chr1 121408731 121408761 -160784903 + (TAA)n Simple_repeat Simple_repeat 1 30 0 305 244 71 0 chr1 121408905 121409032 -160784632 - L1ME4a LINE L1 -3 6118 5983 200 276 142 55 chr1 121409319 121409446 -160784218 + L2 LINE L2 3133 3270 -2 191 355 131 0 chr1 121410912 121411019 -160782645 + L2 LINE L2 3136 3256 -16 436 152 0 0 chr1 121411145 121411211 -160782453 + L1MEc LINE L1 36 101 -6295 216 0 0 0 chr1 121411214 121411238 -160782426 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2261 55 66 0 chr1 121411248 121411537 -160782127 + AluY SINE Alu 1 308 -3 900 95 0 0 chr1 121411552 121411692 -160781972 + AluSg/x SINE Alu 166 305 0 3676 214 45 63 chr1 121411693 121412418 -160781246 + L1MEc LINE L1 98 834 -5562 1842 151 0 24 chr1 121412418 121412710 -160780954 + AluJo SINE Alu 6 290 -22 3676 214 45 63 chr1 121412710 121412911 -160780753 + L1MEc LINE L1 834 1037 -5359 2029 116 9 56 chr1 121412911 121413230 -160780434 + AluSq SINE Alu 10 313 0 3676 214 45 63 chr1 121413230 121413292 -160780372 + L1MEc LINE L1 1037 1099 -5297 2012 133 4 0 chr1 121413292 121413596 -160780068 + AluSx SINE Alu 5 309 0 3676 214 45 63 chr1 121413596 121413716 -160779948 + L1MEc LINE L1 1099 1189 -5207 684 287 52 34 chr1 121413806 121413899 -160779765 + L1MEc LINE L1 1212 1302 -5094 2060 52 78 4 chr1 121413899 121414169 -160779495 + AluY SINE Alu 8 297 -14 684 287 52 34 chr1 121414169 121414483 -160779181 + L1MEc LINE L1 1302 1626 -4770 4395 120 56 32 chr1 121414483 121414672 -160778992 + L1PA16 LINE L1 5415 5598 -568 2411 35 42 3 chr1 121414672 121414961 -160778703 + AluY SINE Alu 1 300 -11 4395 120 56 32 chr1 121414961 121415498 -160778166 + L1PA16 LINE L1 5598 6159 -7 211 232 14 14 chr1 121415750 121415819 -160777845 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1824 157 3 21 chr1 121416561 121416847 -160776817 + AluJo SINE Alu 1 281 -31 567 0 0 0 chr1 121417311 121417374 -160776290 + (TA)n Simple_repeat Simple_repeat 1 63 0 2195 118 0 16 chr1 121417467 121417772 -160775892 + AluSx SINE Alu 1 300 -12 1731 85 27 9 chr1 121417816 121418039 -160775625 + MER30 DNA MER1_type 3 229 -1 366 267 132 81 chr1 121418468 121418605 -160775059 + L1ME LINE L1 4917 5046 -1100 1746 132 0 53 chr1 121418605 121418909 -160774755 + AluJo SINE Alu 1 288 -24 366 267 132 81 chr1 121418909 121419104 -160774560 + L1ME LINE L1 5046 5266 -880 306 284 27 54 chr1 121419143 121419291 -160774373 + L1ME LINE L1 5256 5399 -2409 1375 135 8 62 chr1 121419307 121419551 -160774113 + AluJb SINE Alu 1 231 -81 533 286 44 48 chr1 121419574 121419839 -160773825 + L1ME LINE L1 5443 5665 -456 292 312 115 13 chr1 121419840 121419997 -160773667 - MIR SINE MIR -10 252 80 233 203 94 0 chr1 121420094 121420158 -160773506 + L1ME LINE L1 5836 5905 -216 1381 188 72 51 chr1 121420198 121420491 -160773173 + AluJo SINE Alu 1 299 -13 1857 166 0 7 chr1 121420751 121421046 -160772618 - AluSx SINE Alu -17 295 3 238 278 0 0 chr1 121421355 121421409 -160772255 + Tigger8 DNA MER2_type 609 662 -4 188 348 11 11 chr1 121422109 121422198 -160771466 + MIR SINE MIR 57 145 -63 347 290 142 12 chr1 121422502 121422664 -160771000 + MIR3 SINE MIR 18 200 -8 1612 195 95 22 chr1 121423220 121423410 -160770254 - MSTD LTR MaLR 0 396 221 2109 126 3 0 chr1 121423410 121423723 -160769941 + AluSx SINE Alu 1 312 0 1612 195 95 22 chr1 121423723 121423901 -160769763 - MSTD LTR MaLR -175 221 1 717 332 103 35 chr1 121424239 121424637 -160769027 + L2 LINE L2 2847 3271 -1 467 244 23 78 chr1 121424647 121424845 -160768819 - MIR SINE MIR -68 140 12 827 161 0 0 chr1 121425184 121425302 -160768362 + FLAM_C SINE Alu 1 118 -15 2155 123 7 13 chr1 121425622 121425930 -160767734 + AluSx SINE Alu 1 306 -6 853 228 0 7 chr1 121425958 121426107 -160767557 + FRAM SINE Alu 1 146 -30 31 44 0 0 chr1 121426107 121426152 -160767512 + AT_rich Low_complexity Low_complexity 1 45 0 2325 90 7 0 chr1 121426286 121426587 -160767077 + AluSg1 SINE Alu 1 303 -6 957 203 0 0 chr1 121426672 121426835 -160766829 - FAM SINE Alu -12 173 11 1537 192 17 33 chr1 121426852 121427154 -160766510 - AluJo SINE Alu -15 297 1 459 221 71 18 chr1 121427327 121427440 -160766224 - MIR SINE MIR -59 203 85 197 169 43 26 chr1 121427875 121427925 -160765739 - MIR SINE MIR -57 151 105 180 171 0 49 chr1 121428078 121428119 -160765545 + MIR SINE MIR 39 77 -131 198 128 77 26 chr1 121428930 121428969 -160764695 + L2 LINE L2 3230 3270 -2 329 284 127 22 chr1 121429015 121429149 -160764515 - MIR SINE MIR -70 192 45 420 20 0 0 chr1 121429366 121429415 -160764249 + (TG)n Simple_repeat Simple_repeat 1 49 0 265 224 129 24 chr1 121430021 121430106 -160763558 - MIR3 SINE MIR -4 204 111 235 227 45 30 chr1 121432325 121432391 -160761273 - MIR SINE MIR 0 262 196 217 156 65 0 chr1 121432455 121432532 -160761132 + (TA)n Simple_repeat Simple_repeat 1 82 0 683 234 99 0 chr1 121432543 121432714 -160760950 - MIR SINE MIR -69 193 6 23 0 0 0 chr1 121432998 121433021 -160760643 + AT_rich Low_complexity Low_complexity 1 23 0 2255 135 0 0 chr1 121433827 121434139 -160759525 - AluSx SINE Alu 0 312 1 1687 158 50 4 chr1 121434411 121434529 -160759135 + AluJb SINE Alu 1 112 -200 186 43 0 0 chr1 121434529 121434552 -160759112 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1687 158 50 4 chr1 121434552 121434712 -160758952 + AluJb SINE Alu 112 292 -20 502 152 0 0 chr1 121434722 121434788 -160758876 + AluSc SINE Alu 125 190 -119 31 44 0 0 chr1 121436022 121436067 -160757597 + GC_rich Low_complexity Low_complexity 1 45 0 32 26 0 0 chr1 121436542 121436581 -160757083 + GC_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 121437980 121438008 -160755656 + AT_rich Low_complexity Low_complexity 1 28 0 180 197 155 28 chr1 121438296 121438367 -160755297 + L2 LINE L2 3189 3268 -4 346 278 62 49 chr1 121438941 121439085 -160754579 + L2 LINE L2 3168 3313 0 981 143 0 0 chr1 121440300 121440433 -160753231 + FLAM_C SINE Alu 1 133 0 709 226 49 0 chr1 121441100 121441264 -160752400 + MIR SINE MIR 82 253 -9 2417 93 3 0 chr1 121441313 121441624 -160752040 - AluSp SINE Alu -1 312 1 1492 191 7 27 chr1 121441961 121442259 -160751405 + AluJb SINE Alu 1 292 -20 33 0 0 0 chr1 121442259 121442292 -160751372 + AT_rich Low_complexity Low_complexity 1 33 0 1525 151 70 33 chr1 121442658 121442957 -160750707 + AluSx SINE Alu 1 309 0 182 346 37 12 chr1 121443362 121443443 -160750221 - L2 LINE L2 0 3272 3190 364 354 101 13 chr1 121443527 121443764 -160749900 - L2 LINE L2 -208 3064 2807 639 256 106 45 chr1 121443768 121444014 -160749650 + MIR SINE MIR 1 261 -1 1977 124 45 7 chr1 121444067 121444358 -160749306 - AluSx SINE Alu -10 302 1 275 214 135 11 chr1 121444959 121445048 -160748616 + L1MD2 LINE L1 5794 5893 -466 239 207 4 6 chr1 121445054 121445305 -160748359 + AluJo SINE Alu 20 317 -3 855 215 108 0 chr1 121445305 121445519 -160748145 + L1ME2 LINE L1 5918 6154 -10 2257 52 14 24 chr1 121445618 121445906 -160747758 - AluY SINE Alu -26 285 1 1918 122 0 21 chr1 121446257 121446544 -160747120 - AluSx SINE Alu -11 301 21 233 318 93 23 chr1 121447089 121447218 -160746446 + L2 LINE L2 3172 3309 -4 2241 93 20 13 chr1 121447299 121447600 -160746064 - AluSx SINE Alu -5 307 5 225 326 7 50 chr1 121447719 121447775 -160745889 + L2 LINE L2 1773 1830 -1484 2056 146 0 0 chr1 121447775 121448076 -160745588 - AluSx SINE Alu -11 301 1 225 326 7 50 chr1 121448076 121448160 -160745504 + L2 LINE L2 1830 1907 -1407 1173 200 9 9 chr1 121448251 121448471 -160745193 + AluJo SINE Alu 1 220 -92 269 189 0 0 chr1 121448471 121448524 -160745140 + FAM SINE Alu 127 179 0 991 177 132 42 chr1 121449236 121449600 -160744064 + L1ME2 LINE L1 5759 6164 0 904 144 17 58 chr1 121450237 121450410 -160743254 - FRAM SINE Alu -13 163 1 302 314 25 17 chr1 121452255 121452373 -160741291 + L2 LINE L2 2198 2316 -998 426 374 17 11 chr1 121452478 121452652 -160741012 + L2 LINE L2 2571 2745 -569 340 317 92 0 chr1 121453047 121453167 -160740497 + L2 LINE L2 3133 3263 -9 27 49 0 0 chr1 121454216 121454257 -160739407 + AT_rich Low_complexity Low_complexity 1 41 0 193 250 266 8 chr1 121454636 121454764 -160738900 + MIR SINE MIR 98 258 -4 2005 162 0 0 chr1 121455444 121455746 -160737918 + AluJb SINE Alu 1 302 -10 2199 253 76 26 chr1 121455757 121456379 -160737285 + HAL1 LINE L1 2 660 -1847 605 222 71 68 chr1 121456379 121456562 -160737102 + MER112 DNA MER1_type 1 187 -69 1738 161 50 4 chr1 121456562 121456842 -160736822 + AluJb SINE Alu 1 293 -19 605 222 71 68 chr1 121456842 121456910 -160736754 + MER112 DNA MER1_type 187 253 -3 2199 253 76 26 chr1 121456910 121456946 -160736718 + HAL1 LINE L1 660 693 -1814 502 170 21 0 chr1 121456952 121457046 -160736618 - AluJb SINE Alu -27 285 190 1519 205 4 4 chr1 121457166 121457434 -160736230 - AluJb SINE Alu -31 281 14 731 148 47 16 chr1 121457436 121457564 -160736100 - AluJo SINE Alu -169 143 12 237 206 127 16 chr1 121457570 121457696 -160735968 + HAL1 LINE L1 940 1079 -1428 2195 92 7 0 chr1 121457703 121458006 -160735658 + AluSp SINE Alu 1 305 0 1707 230 95 67 chr1 121458018 121458220 -160735444 + HAL1 LINE L1 1694 1889 -618 1975 137 3 17 chr1 121458220 121458353 -160735311 + AluJb SINE Alu 5 138 -174 2379 89 13 0 chr1 121458353 121458655 -160735009 + AluSg SINE Alu 1 306 -4 1975 137 3 17 chr1 121458655 121458820 -160734844 + AluJb SINE Alu 138 299 -13 1707 230 95 67 chr1 121458820 121459409 -160734255 + HAL1 LINE L1 1889 2507 0 993 181 45 0 chr1 121459551 121459728 -160733936 + MER20 DNA MER1_type 2 186 -33 1762 149 7 30 chr1 121459729 121460024 -160733640 + AluJo SINE Alu 2 289 -23 966 108 4 3 chr1 121460087 121460322 -160733342 + AluSx SINE Alu 2 309 -1 29 0 0 0 chr1 121460758 121460787 -160732877 + AT_rich Low_complexity Low_complexity 1 29 0 2162 94 42 0 chr1 121461313 121461599 -160732065 - AluSg SINE Alu -12 298 1 31 44 0 0 chr1 121461733 121461778 -160731886 + AT_rich Low_complexity Low_complexity 1 45 0 796 232 0 7 chr1 121461778 121461929 -160731735 - FRAM SINE Alu -30 146 1 2170 123 7 13 chr1 121461955 121462263 -160731401 - AluSx SINE Alu -6 306 1 780 161 0 0 chr1 121462583 121462701 -160730963 - FLAM_C SINE Alu -15 118 1 416 239 24 78 chr1 121463071 121463238 -160730426 + MIR SINE MIR 32 189 -73 592 332 103 35 chr1 121463248 121463646 -160730018 - L2 LINE L2 -1 3271 2847 1482 195 95 22 chr1 121463984 121464162 -160729502 + MSTD LTR MaLR 1 165 -231 2125 126 3 0 chr1 121464162 121464475 -160729189 - AluSx SINE Alu 0 312 1 1482 195 95 22 chr1 121464475 121464665 -160728999 + MSTD LTR MaLR 165 396 0 294 290 142 12 chr1 121465221 121465383 -160728281 - MIR3 SINE MIR -8 200 18 236 278 0 0 chr1 121466475 121466529 -160727135 - Tigger8 DNA MER2_type -4 662 609 2175 137 0 0 chr1 121466838 121467131 -160726533 + AluSx SINE Alu 3 295 -17 1093 222 0 5 chr1 121467347 121467545 -160726119 - AluJo SINE Alu -102 210 14 731 148 47 16 chr1 121467547 121467675 -160725989 - AluJb SINE Alu -169 143 12 253 203 125 16 chr1 121467681 121467809 -160725855 + HAL1 LINE L1 940 1081 -1426 2195 92 7 0 chr1 121467813 121468116 -160725548 + AluSp SINE Alu 1 305 0 1724 229 95 67 chr1 121468128 121468330 -160725334 + HAL1 LINE L1 1694 1889 -618 1951 135 3 30 chr1 121468330 121468463 -160725201 + AluJb SINE Alu 5 140 -172 2337 91 14 0 chr1 121468463 121468760 -160724904 + AluSg SINE Alu 1 301 -9 1951 135 3 30 chr1 121468760 121468929 -160724735 + AluJb SINE Alu 140 299 -13 1724 229 95 67 chr1 121468929 121469518 -160724146 + HAL1 LINE L1 1889 2507 0 966 176 51 0 chr1 121469659 121469835 -160723829 + MER20 DNA MER1_type 2 186 -33 1762 149 7 30 chr1 121469836 121470131 -160723533 + AluJo SINE Alu 2 289 -23 940 107 4 3 chr1 121470194 121470422 -160723242 + AluSx SINE Alu 2 302 -8 29 0 0 0 chr1 121470855 121470884 -160722780 + AT_rich Low_complexity Low_complexity 1 29 0 2132 108 35 3 chr1 121471414 121471702 -160721962 - AluSg SINE Alu -11 299 3 2049 88 0 0 chr1 121472090 121472350 -160721314 + AluSq SINE Alu 1 260 -53 199 346 39 29 chr1 121473057 121473161 -160720503 + L2 LINE L2 2992 3096 -176 968 128 20 13 chr1 121473257 121473406 -160720258 - AluJo SINE Alu -159 153 4 1543 103 5 5 chr1 121473429 121473642 -160720022 + AluSg1 SINE Alu 1 213 -96 2548 51 0 0 chr1 121473642 121473934 -160719730 + AluSc SINE Alu 1 293 -16 574 85 24 0 chr1 121473934 121474016 -160719648 + AluSg1 SINE Alu 203 286 -24 359 250 36 0 chr1 121474021 121474105 -160719559 + L2 LINE L2 3203 3289 -24 443 118 40 0 chr1 121476103 121476179 -160717485 + AluSp/q SINE Alu 226 304 -9 1167 143 164 49 chr1 121476304 121476591 -160717073 + L1MA9 LINE L1 5989 6308 -4 2315 104 0 0 chr1 121477099 121477397 -160716267 + AluSg1 SINE Alu 1 298 -11 2393 138 12 7 chr1 121477711 121478117 -160715547 + L1MB4 LINE L1 5772 6179 -1 2263 100 7 0 chr1 121478248 121478558 -160715106 - L1PA12 LINE L1 0 6168 5857 189 0 0 0 chr1 121478563 121478584 -160715080 + (ATTG)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 121478700 121478722 -160714942 + AT_rich Low_complexity Low_complexity 1 22 0 1502 238 15 29 chr1 121479404 121479691 -160713973 + LTR16B LTR ERVL 130 413 -51 2133 148 20 45 chr1 121479691 121480089 -160713575 + MLT1B LTR MaLR 3 390 0 1502 238 15 29 chr1 121480089 121480141 -160713523 + LTR16B LTR ERVL 413 464 0 775 338 56 19 chr1 121480169 121480542 -160713122 + HERV16 LTR ERVL 38 424 -4572 1924 304 85 51 chr1 121480616 121481601 -160712063 + HERV16 LTR ERVL 517 1640 -3555 1177 185 80 99 chr1 121481679 121481981 -160711683 + MLT2B1 LTR ERVL 1 296 -118 318 336 21 0 chr1 121481993 121482136 -160711528 + HERV16 LTR ERVL 3843 3988 -1666 1422 174 19 108 chr1 121482240 121482256 -160711408 + MLT1B LTR MaLR 3 19 -371 2427 105 19 11 chr1 121482256 121482617 -160711047 - THE1B LTR MaLR 0 364 1 10760 102 43 1 chr1 121482617 121484134 -160709530 - THE1B-int LTR MaLR 0 1580 1 2553 90 30 41 chr1 121484134 121484176 -160709488 - THE1B LTR MaLR 0 364 323 2327 106 0 0 chr1 121484176 121484479 -160709185 + AluSg1 SINE Alu 1 303 -6 2553 90 30 41 chr1 121484479 121484804 -160708860 - THE1B LTR MaLR -41 323 1 1422 174 19 108 chr1 121484804 121485210 -160708454 + MLT1B LTR MaLR 16 389 -1 689 289 71 85 chr1 121485215 121485720 -160707944 + HERV16 LTR ERVL 4113 4610 -1044 1699 166 9 58 chr1 121485724 121485922 -160707742 - AluJb SINE Alu -3 309 132 2039 89 3 46 chr1 121485922 121486225 -160707439 + AluY SINE Alu 1 290 -21 1699 166 9 58 chr1 121486225 121486351 -160707313 - AluJb SINE Alu -180 132 1 282 299 0 21 chr1 121486361 121486458 -160707206 + HERV16 LTR ERVL 4290 4384 -612 992 214 86 53 chr1 121486467 121486797 -160706867 - MSTC LTR MaLR 0 428 50 2453 71 0 0 chr1 121486797 121487092 -160706572 - AluY SINE Alu -16 295 1 992 214 86 53 chr1 121487092 121487144 -160706520 - MSTC LTR MaLR -378 50 1 667 291 114 37 chr1 121487370 121487827 -160705837 + HERV16 LTR ERVL 4505 4996 0 946 221 77 14 chr1 121487827 121488035 -160705629 + LTR16B LTR ERVL 1 221 -243 1003 252 78 16 chr1 121488043 121488491 -160705173 + L1M4 LINE L1 3075 3550 -2596 224 304 0 29 chr1 121488602 121488671 -160704993 - L2 LINE L2 -18 3254 3188 297 326 88 14 chr1 121488880 121489095 -160704569 + L2 LINE L2 2068 2298 -1016 3091 262 114 19 chr1 121489154 121490555 -160703109 + L2 LINE L2 1688 3237 -76 744 78 58 0 chr1 121490609 121490712 -160702952 + AluJb SINE Alu 24 132 -180 190 373 61 24 chr1 121490715 121490927 -160702737 + L2 LINE L2 2524 2743 -571 1594 292 100 14 chr1 121491322 121492079 -160701585 - L2 LINE L2 -345 2969 2148 1221 258 58 60 chr1 121492675 121493156 -160700508 + MER21B LTR ERV1 235 714 -149 977 291 88 48 chr1 121493180 121493721 -160699943 - MLT1K LTR MaLR -27 588 1 837 270 118 104 chr1 121494277 121494619 -160699045 + MLT1K LTR MaLR 41 376 -212 1834 133 34 17 chr1 121494619 121494912 -160698752 + AluJb SINE Alu 1 298 -14 2008 145 0 0 chr1 121494916 121495220 -160698444 + AluSg SINE Alu 6 309 -1 837 270 118 104 chr1 121495220 121495412 -160698252 + MLT1K LTR MaLR 378 588 0 733 164 16 0 chr1 121495499 121495627 -160698037 - AluJb SINE Alu -13 299 170 2158 118 0 0 chr1 121495881 121496178 -160697486 - AluSx SINE Alu -15 297 1 708 145 30 38 chr1 121496329 121496460 -160697204 - AluSq/x SINE Alu -181 131 2 744 305 41 12 chr1 121496980 121497226 -160696438 - MIR SINE MIR -2 260 8 2210 91 0 16 chr1 121497318 121497625 -160696039 - AluSg SINE Alu -8 302 1 713 238 19 33 chr1 121498222 121498432 -160695232 + L1M4 LINE L1 3582 3788 -2358 230 150 25 25 chr1 121498433 121498513 -160695151 + (TA)n Simple_repeat Simple_repeat 2 81 0 238 175 270 0 chr1 121498518 121498581 -160695083 + L1M4 LINE L1 3767 3846 -2300 561 155 155 35 chr1 121498581 121498697 -160694967 + FLAM_A SINE Alu 1 130 -3 5691 161 32 31 chr1 121498699 121498973 -160694691 + L1MC1 LINE L1 4827 5099 -1234 1472 174 33 16 chr1 121498973 121499278 -160694386 - AluJo SINE Alu -2 310 1 5691 161 32 31 chr1 121499278 121500310 -160693354 + L1MC1 LINE L1 5099 6125 -208 1716 168 20 3 chr1 121500310 121500602 -160693062 + AluJo SINE Alu 1 297 -15 5691 161 32 31 chr1 121500602 121500806 -160692858 + L1MC1 LINE L1 6125 6327 -6 1979 130 7 0 chr1 121500851 121501150 -160692514 + AluSq SINE Alu 1 301 -12 2602 164 42 6 chr1 121501195 121501701 -160691963 - LTR27 LTR ERV1 -11 490 3 12214 144 41 46 chr1 121501702 121501763 -160691901 - LTR27-int LTR ERV1 0 6940 6880 2278 63 10 3 chr1 121501763 121502064 -160691600 + AluY SINE Alu 1 303 -8 12214 144 41 46 chr1 121502064 121502847 -160690817 - LTR27-int LTR ERV1 -60 6880 6095 2236 86 3 0 chr1 121502847 121503138 -160690526 - AluSx SINE Alu -20 292 1 12214 144 41 46 chr1 121503138 121505027 -160688637 - LTR27-int LTR ERV1 -845 6095 3261 1916 176 7 34 chr1 121505027 121505443 -160688221 + L1M4 LINE L1 3902 4306 -1840 329 102 0 0 chr1 121505444 121505493 -160688171 - AluSp/q SINE Alu -10 293 245 766 160 0 0 chr1 121505599 121505718 -160687946 + AluSg/x SINE Alu 172 290 -20 582 304 44 0 chr1 121506063 121506221 -160687443 - L2 LINE L2 -1 3271 3107 384 251 22 75 chr1 121506423 121506602 -160687062 + MIR SINE MIR 43 212 -50 1726 114 4 4 chr1 121507932 121508187 -160685477 - AluSx SINE Alu -57 255 1 2210 178 57 4 chr1 121511772 121512250 -160681414 + L1MA9 LINE L1 5810 6312 0 26 64 0 0 chr1 121512335 121512382 -160681282 + AT_rich Low_complexity Low_complexity 1 47 0 194 322 25 51 chr1 121513428 121513546 -160680118 - L3b LINE CR1 -345 1238 1124 2131 109 0 7 chr1 121513946 121514249 -160679415 + AluSq SINE Alu 1 301 -12 1991 110 17 3 chr1 121514651 121514962 -160678702 - AluSq SINE Alu 0 313 3 843 281 96 73 chr1 121515013 121515059 -160678605 - L2 LINE L2 0 3313 3270 1939 129 7 0 chr1 121515059 121515345 -160678319 - AluSx SINE Alu -22 290 3 843 281 96 73 chr1 121515345 121515822 -160677842 - L2 LINE L2 -43 3270 2778 23 0 0 0 chr1 121515853 121515876 -160677788 + AT_rich Low_complexity Low_complexity 1 23 0 2333 75 0 0 chr1 121516304 121516597 -160677067 - AluY SINE Alu -17 294 2 213 264 132 11 chr1 121516599 121516690 -160676974 + L2 LINE L2 2926 3027 -245 294 320 21 0 chr1 121516752 121516849 -160676815 - L2 LINE L2 -6 3307 3209 2195 199 27 34 chr1 121516849 121517289 -160676375 + L1MB4 LINE L1 5327 5764 -416 2226 104 7 0 chr1 121517289 121517597 -160676067 + AluSx SINE Alu 1 310 -2 2195 199 27 34 chr1 121517597 121517719 -160675945 + L1MB4 LINE L1 5764 5885 -295 2071 137 0 0 chr1 121517901 121518208 -160675456 + AluSx SINE Alu 1 307 -5 8337 111 12 13 chr1 121518250 121518689 -160674975 - HSMAR2 DNA Mariner -23 1279 841 1560 158 4 19 chr1 121518689 121518954 -160674710 + AluJb SINE Alu 48 308 -4 8337 111 12 13 chr1 121518954 121519735 -160673929 - HSMAR2 DNA Mariner -461 841 60 890 173 0 0 chr1 121519736 121519886 -160673778 + AluJb SINE Alu 137 286 -26 24 0 0 0 chr1 121519887 121519911 -160673753 + AT_rich Low_complexity Low_complexity 1 24 0 409 155 0 0 chr1 121519911 121519982 -160673682 - HSMAR2 DNA Mariner -1229 73 3 811 228 16 0 chr1 121519983 121520176 -160673488 + L1ME1 LINE L1 4411 4606 -1540 1575 169 16 54 chr1 121520184 121520523 -160673141 - L1MA4 LINE L1 0 6300 5975 1810 150 14 0 chr1 121520523 121520816 -160672848 - AluSx SINE Alu -15 297 1 1575 169 16 54 chr1 121520816 121520848 -160672816 - L1MA4 LINE L1 -325 5975 5943 260 33 0 0 chr1 121520900 121520930 -160672734 - L1MA4 LINE L1 -362 5941 5912 1185 203 67 13 chr1 121520940 121521255 -160672409 + L1ME1 LINE L1 4614 4945 -1201 1815 152 10 0 chr1 121521257 121521559 -160672105 - AluSx SINE Alu -7 305 1 1537 176 27 3 chr1 121521589 121521884 -160671780 + AluSx SINE Alu 1 302 -10 451 204 139 15 chr1 121521894 121522031 -160671633 + FAM SINE Alu 1 42 -7 338 164 0 0 chr1 121522118 121522179 -160671485 - AluSc SINE Alu -3 296 236 3561 121 146 3 chr1 121522179 121522781 -160670883 - LTR12 LTR ERV1 0 688 1 1587 74 0 0 chr1 121522781 121522984 -160670680 - AluSc SINE Alu -70 239 37 1018 208 102 8 chr1 121522984 121523249 -160670415 + L1ME1 LINE L1 5081 5370 -776 1008 169 0 0 chr1 121523251 121523423 -160670241 + AluSg/x SINE Alu 130 301 -9 216 0 0 0 chr1 121523424 121523448 -160670216 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 255 31 0 0 chr1 121523447 121523479 -160670185 + (GA)n Simple_repeat Simple_repeat 1 32 0 3022 192 49 56 chr1 121523479 121524238 -160669426 + L1ME1 LINE L1 5369 6277 -57 305 186 240 78 chr1 121524268 121524344 -160669320 - MER112 DNA MER1_type -1 259 197 674 168 26 111 chr1 121524344 121524456 -160669208 + MER69A DNA AcHobo 2 93 -2433 1687 142 66 0 chr1 121524456 121524745 -160668919 - AluSx SINE Alu -2 310 3 674 168 26 111 chr1 121524745 121524822 -160668842 + MER69A DNA AcHobo 93 175 -2 305 186 240 78 chr1 121524822 121524949 -160668715 - MER112 DNA MER1_type -63 197 23 692 277 55 25 chr1 121525008 121525282 -160668382 + L1ME3A LINE L1 5655 5936 -234 279 255 10 78 chr1 121525673 121525775 -160667889 - MIR SINE MIR -56 206 112 233 0 62 0 chr1 121526252 121526284 -160667380 + (TTCCC)n Simple_repeat Simple_repeat 1 34 0 2190 104 7 0 chr1 121526337 121526646 -160667018 - AluSx SINE Alu -1 311 1 2166 89 0 3 chr1 121526778 121527069 -160666595 - AluSg SINE Alu -20 290 1 180 0 0 0 chr1 121527686 121527706 -160665958 + (CAGC)n Simple_repeat Simple_repeat 4 23 0 352 307 85 13 chr1 121528811 121528964 -160664700 + MIR3 SINE MIR 24 187 -21 227 196 78 0 chr1 121528999 121529050 -160664614 + MIR SINE MIR 77 131 -77 1471 141 61 4 chr1 121530609 121530872 -160662792 + AluJo SINE Alu 35 312 0 1288 204 10 44 chr1 121530996 121531290 -160662374 - AluJo SINE Alu -15 297 14 269 303 138 35 chr1 121531922 121532067 -160661597 + L2 LINE L2 3154 3313 0 721 289 16 5 chr1 121532073 121532260 -160661404 + MIR3 SINE MIR 20 208 0 530 234 0 9 chr1 121532478 121532589 -160661075 + MER3 DNA MER1_type 11 120 -89 980 111 0 0 chr1 121532593 121532728 -160660936 - AluSq/x SINE Alu -178 135 1 1595 148 53 3 chr1 121532733 121533017 -160660647 - AluJo SINE Alu -14 298 1 408 202 0 11 chr1 121533017 121533101 -160660563 + MER3 DNA MER1_type 127 209 0 368 236 90 11 chr1 121533103 121533132 -160660532 + L2 LINE L2 3191 3216 -97 1440 169 104 7 chr1 121533132 121533411 -160660253 - AluJb SINE Alu -6 306 1 368 236 90 11 chr1 121533411 121533470 -160660194 + L2 LINE L2 3216 3286 -27 1716 133 9 38 chr1 121533619 121533934 -160659730 - AluJo SINE Alu -6 306 1 205 339 247 16 chr1 121534064 121534380 -160659284 + L3b LINE CR1 1102 1490 -93 642 249 15 83 chr1 121534552 121534638 -160659026 - MIR3 SINE MIR -3 205 115 2108 88 0 11 chr1 121534638 121534923 -160658741 + AluY SINE Alu 14 295 -16 642 249 15 83 chr1 121534923 121535041 -160658623 - MIR3 SINE MIR -93 115 15 2108 88 3 55 chr1 121535323 121535651 -160658013 - AluSx SINE Alu -1 311 1 190 243 19 103 chr1 121537019 121537126 -160656538 + MIR SINE MIR 87 184 -78 933 201 110 32 chr1 121538168 121538387 -160655277 + MIR SINE MIR 27 262 0 294 230 57 81 chr1 121539709 121539918 -160653746 - L1MC4 LINE L1 -1 8041 7838 29 0 0 0 chr1 121543866 121543895 -160649769 + GC_rich Low_complexity Low_complexity 1 29 0 214 254 42 17 chr1 121544904 121545022 -160648642 + (CGG)n Simple_repeat Simple_repeat 3 123 0 233 135 19 0 chr1 121545591 121545643 -160648021 + (TCCA)n Simple_repeat Simple_repeat 4 56 0 226 276 0 0 chr1 121546247 121546305 -160647359 + G-rich Low_complexity Low_complexity 4 61 0 264 309 45 27 chr1 121546641 121546751 -160646913 - MIR3 SINE MIR -32 176 65 23 54 0 0 chr1 121553695 121553732 -160639932 + AT_rich Low_complexity Low_complexity 1 37 0 2508 77 0 0 chr1 121555571 121555883 -160637781 + AluSx SINE Alu 1 312 0 292 265 122 0 chr1 121557706 121557804 -160635860 + MIR3 SINE MIR 81 190 -18 2341 82 31 0 chr1 121560375 121560668 -160632996 - AluSc SINE Alu -7 302 1 237 200 0 0 chr1 121561353 121561403 -160632261 + MIR SINE MIR 157 206 -56 345 47 0 0 chr1 121562064 121562107 -160631557 + (CA)n Simple_repeat Simple_repeat 1 43 0 261 256 74 25 chr1 121563717 121563838 -160629826 + 7SK RNA RNA 2 128 -65 1260 194 93 49 chr1 121564421 121564500 -160629164 + MER58B DNA MER1_type 2 76 -2344 270 0 0 0 chr1 121564500 121564530 -160629134 + (TA)n Simple_repeat Simple_repeat 1 30 0 2552 55 0 0 chr1 121564533 121564826 -160628838 - AluY SINE Alu -18 293 1 1260 194 93 49 chr1 121564826 121565066 -160628598 + MER58B DNA MER1_type 77 339 -2 189 0 0 0 chr1 121565462 121565483 -160628181 + (TAA)n Simple_repeat Simple_repeat 2 22 0 205 238 0 0 chr1 121570078 121570120 -160623544 + C-rich Low_complexity Low_complexity 2 43 0 37 62 0 0 chr1 121570756 121570821 -160622843 + GC_rich Low_complexity Low_complexity 1 65 0 306 0 0 0 chr1 121571397 121571431 -160622233 + (CA)n Simple_repeat Simple_repeat 2 35 0 2014 144 27 0 chr1 121571990 121572289 -160621375 + AluJb SINE Alu 6 312 0 1747 227 106 18 chr1 121572402 121572900 -160620764 - MLT1F LTR MaLR 0 542 1 307 200 42 11 chr1 121572921 121573016 -160620648 - L1MC5 LINE L1 -32 7929 7832 2219 116 7 0 chr1 121573145 121573448 -160620216 - AluSq SINE Alu -8 305 1 359 24 0 0 chr1 121573448 121573490 -160620174 + THE1B LTR MaLR 323 364 0 10914 102 43 1 chr1 121573490 121575007 -160618657 + THE1B-int LTR MaLR 1 1580 0 2080 131 28 17 chr1 121575007 121575367 -160618297 + THE1B LTR MaLR 1 364 0 304 336 21 0 chr1 121575488 121575631 -160618033 - HERVL LTR ERVL -1666 3988 3843 1089 185 80 99 chr1 121575643 121575945 -160617719 - MLT2B1 LTR ERVL -118 296 1 1723 305 86 50 chr1 121576115 121577008 -160616656 - HERVL LTR ERVL -3555 1441 517 713 349 54 16 chr1 121577082 121577455 -160616209 - HERVL LTR ERVL -4572 424 38 1412 243 14 29 chr1 121577483 121577535 -160616129 - LTR16B LTR ERVL 0 464 413 2160 148 20 45 chr1 121577535 121577933 -160615731 - MLT1B LTR MaLR 0 390 3 1412 243 14 29 chr1 121577933 121578226 -160615438 - LTR16B LTR ERVL -51 413 124 1511 153 7 11 chr1 121579030 121579311 -160614353 - L1P4 LINE L1 -531 5630 5351 6689 41 6 3 chr1 121579335 121580191 -160613473 - L1PA4 LINE L1 -1 6154 5297 7515 53 1 1 chr1 121580291 121581297 -160612367 - L1PA4 LINE L1 -2260 3886 2881 9693 203 36 72 chr1 121581400 121581572 -160612092 - L1M2 LINE L1 -534 6738 6561 2233 121 0 3 chr1 121581572 121581877 -160611787 - AluSg SINE Alu -6 304 1 9693 203 36 72 chr1 121581877 121582516 -160611148 - L1M2 LINE L1 -711 6561 5901 2419 92 0 0 chr1 121582516 121582810 -160610854 + AluSc SINE Alu 1 294 -15 9693 203 36 72 chr1 121582810 121583162 -160610502 - L1M2 LINE L1 -1371 5901 5538 1452 187 66 11 chr1 121583162 121583435 -160610229 - AluJb SINE Alu -12 290 3 9693 203 36 72 chr1 121583435 121585449 -160608215 - L1M2 LINE L1 -1734 5538 3453 2008 108 38 17 chr1 121585449 121585737 -160607927 + AluSg SINE Alu 1 294 -16 9693 203 36 72 chr1 121585737 121586190 -160607474 - L1M2 LINE L1 -3819 3453 3298 2343 101 0 0 chr1 121586190 121586488 -160607176 + AluY SINE Alu 1 298 -13 9693 203 36 72 chr1 121586488 121586565 -160607099 - L1M2 LINE L1 -3974 3298 3220 583 236 239 18 chr1 121586581 121586912 -160606752 - L1M2 LINE L1 -5143 1887 1484 4127 144 33 63 chr1 121587146 121588033 -160605631 + L1MB2 LINE L1 5281 6140 -31 878 120 0 0 chr1 121588987 121589104 -160604560 + FLAM_C SINE Alu 1 117 -16 332 173 0 0 chr1 121589138 121589190 -160604474 + L1MC4 LINE L1 6652 6703 -1339 * 353 200 43 0 chr1 121589159 121589229 -160604435 + L1MCa LINE L1 1996 2068 -4358 * 379 273 23 0 chr1 121589206 121589294 -160604370 + L1MC4 LINE L1 6894 6983 -1339 496 158 0 30 chr1 121589424 121589525 -160604139 + MER46A DNA MER2_type 139 236 0 263 307 79 31 chr1 121589539 121589666 -160603998 + MER5A DNA MER1_type 1 133 -56 222 283 65 72 chr1 121589570 121589708 -160603956 - MER5A DNA MER1_type -22 167 31 * 2223 134 7 0 chr1 121589799 121590105 -160603559 + AluSx SINE Alu 5 312 0 193 191 170 0 chr1 121591454 121591501 -160602163 + MER5B DNA MER1_type 1 55 -123 1676 85 76 13 chr1 121591512 121591748 -160601916 + AluY SINE Alu 1 251 -60 1014 122 0 20 chr1 121591851 121591998 -160601666 + AluSg/x SINE Alu 153 296 -16 2071 96 46 3 chr1 121592202 121592484 -160601180 - AluSc SINE Alu -15 294 1 2061 153 3 7 chr1 121593420 121593721 -160599943 - AluJb SINE Alu -12 300 1 189 200 44 22 chr1 121594082 121594127 -160599537 - MIR SINE MIR -114 94 49 765 204 190 9 chr1 121594133 121594344 -160599320 + MIR SINE MIR 3 251 -11 385 305 122 0 chr1 121594717 121594848 -160598816 + L3 LINE CR1 1033 1179 -398 202 250 65 65 chr1 121594845 121594937 -160598727 - L2 LINE L2 0 3272 3181 * 1554 164 207 0 chr1 121595119 121595472 -160598192 - MSTA LTR MaLR 0 428 3 280 275 100 0 chr1 121595477 121595557 -160598107 + MIR SINE MIR 67 154 -108 234 299 104 0 chr1 121595564 121595641 -160598023 + MER5A DNA MER1_type 57 141 -48 419 314 70 6 chr1 121595680 121595813 -160597851 + MER5A DNA MER1_type 6 154 -35 2300 70 20 17 chr1 121595813 121596115 -160597549 - AluY SINE Alu -8 303 1 419 314 70 6 chr1 121596115 121596153 -160597511 + MER5A DNA MER1_type 154 188 -1 187 220 68 17 chr1 121596153 121596203 -160597461 + MIR SINE MIR 163 215 -47 516 305 37 5 chr1 121596997 121597187 -160596477 + L3 LINE CR1 1296 1491 -86 333 137 0 0 chr1 121597211 121597262 -160596402 - Alu SINE Alu -9 292 242 2136 94 7 14 chr1 121597285 121597582 -160596082 - AluSg1 SINE Alu -14 295 1 183 308 75 37 chr1 121597660 121597767 -160595897 + L3b LINE CR1 1455 1565 -18 1923 141 0 39 chr1 121598035 121598341 -160595323 + AluSx SINE Alu 1 294 -18 182 196 214 0 chr1 121598491 121598547 -160595117 + L3 LINE CR1 1491 1558 -19 578 181 14 58 chr1 121598786 121598924 -160594740 - FLAM_A SINE Alu 0 133 2 333 289 102 18 chr1 121600056 121600222 -160593442 + MIR3 SINE MIR 6 185 -23 1428 241 42 40 chr1 121601060 121601509 -160592155 - MLT1J2 LTR MaLR 0 450 1 228 182 0 0 chr1 121601633 121601677 -160591987 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 4279 229 88 59 chr1 121602039 121602350 -160591314 + L1MC4 LINE L1 6459 6760 -1282 206 31 0 31 chr1 121602350 121602382 -160591282 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4279 229 88 59 chr1 121602382 121602596 -160591068 + L1MC4 LINE L1 6760 6966 -1076 201 74 0 0 chr1 121602596 121602623 -160591041 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 4279 229 88 59 chr1 121602623 121602740 -160590924 + L1MC4 LINE L1 6966 7078 -964 2198 107 7 0 chr1 121602740 121603056 -160590608 + AluSq SINE Alu 1 318 0 4279 229 88 59 chr1 121603056 121603248 -160590416 + L1MC4 LINE L1 7078 7263 -779 2162 125 0 0 chr1 121603248 121603527 -160590137 + AluSx SINE Alu 1 279 -33 4279 229 88 59 chr1 121603527 121603883 -160589781 + L1MC4 LINE L1 7263 7607 -435 1813 181 7 7 chr1 121603883 121604175 -160589489 + AluJb SINE Alu 7 298 -14 4279 229 88 59 chr1 121604175 121604424 -160589240 + L1MC4 LINE L1 7607 7952 -90 2183 134 0 6 chr1 121604424 121604737 -160588927 + AluJb SINE Alu 1 311 -1 4279 229 88 59 chr1 121604737 121604831 -160588833 + L1MC4 LINE L1 7952 8042 0 264 333 167 27 chr1 121604927 121605113 -160588551 + MIR SINE MIR 2 213 -49 361 254 30 81 chr1 121606698 121606883 -160586781 + MIR3 SINE MIR 33 208 0 1914 120 68 0 chr1 121607288 121607589 -160586075 + AluSx SINE Alu 1 319 0 258 32 0 0 chr1 121607590 121607621 -160586043 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 333 12 12 chr1 121607751 121607832 -160585832 + MIR3 SINE MIR 125 205 -3 271 224 11 51 chr1 121612582 121612672 -160580992 - MIR SINE MIR -86 122 49 985 194 166 16 chr1 121612885 121613271 -160580393 + L1MC5 LINE L1 7501 7944 -17 2359 81 0 3 chr1 121613285 121613580 -160580084 + AluY SINE Alu 1 294 -17 275 232 248 0 chr1 121613643 121613768 -160579896 - MIR SINE MIR -21 241 86 474 274 34 73 chr1 121613802 121614006 -160579658 + MIR SINE MIR 31 226 -36 1620 196 14 7 chr1 121615467 121615758 -160577906 + AluJb SINE Alu 1 293 -19 963 153 13 0 chr1 121616796 121616953 -160576711 - MER20 DNA MER1_type -59 160 2 1162 191 21 34 chr1 121617090 121617253 -160576411 - AluJb SINE Alu -18 294 133 2238 100 7 13 chr1 121617253 121617554 -160576110 - AluSx SINE Alu -13 299 1 1162 191 21 34 chr1 121617554 121617626 -160576038 - AluJb SINE Alu -179 133 62 479 269 163 0 chr1 121620168 121620328 -160573336 + MER5A DNA MER1_type 4 189 0 573 171 212 27 chr1 121620571 121620717 -160572947 - MER5B DNA MER1_type -5 173 1 187 305 139 43 chr1 121621147 121621297 -160572367 - MIR SINE MIR -2 260 87 1879 110 57 57 chr1 121621297 121621424 -160572240 + AluSx SINE Alu 1 127 -185 2065 88 102 14 chr1 121621424 121621709 -160571955 + AluSx SINE Alu 1 310 -2 1879 110 57 57 chr1 121621709 121621880 -160571784 + AluSx SINE Alu 126 299 -13 187 305 139 43 chr1 121621880 121621916 -160571748 - MIR SINE MIR -175 87 56 268 316 92 9 chr1 121622310 121622452 -160571212 - MIR SINE MIR -65 143 11 327 213 94 16 chr1 121624161 121624288 -160569376 - L1ME4a LINE L1 -9 6112 5976 798 280 82 13 chr1 121624298 121624676 -160568988 - L1ME4a LINE L1 -191 5930 5527 878 227 68 0 chr1 121625291 121625511 -160568153 - MIR SINE MIR -16 246 12 521 216 93 14 chr1 121625643 121625782 -160567882 - MIR SINE MIR -1 261 112 220 173 39 19 chr1 121625870 121625922 -160567742 + G-rich Low_complexity Low_complexity 3 55 0 246 342 0 0 chr1 121628606 121628682 -160564982 - MIR SINE MIR -29 233 158 287 337 70 35 chr1 121629835 121630007 -160563657 + MIR SINE MIR 6 183 -79 2332 94 24 0 chr1 121630052 121630349 -160563315 + AluSg SINE Alu 1 304 -6 2076 108 18 4 chr1 121631339 121631641 -160562023 + AluSx SINE Alu 1 306 0 521 258 8 0 chr1 121631738 121631862 -160561802 - Charlie4 DNA MER1_type 0 1961 1837 416 305 24 24 chr1 121632952 121633119 -160560545 - MIR3 SINE MIR -15 193 27 1651 107 57 11 chr1 121633517 121633797 -160559867 + L1MB3 LINE L1 5891 6183 0 287 308 177 0 chr1 121634569 121634699 -160558965 - MIR3 SINE MIR -7 201 49 204 222 0 0 chr1 121639232 121639277 -160554387 + (TG)n Simple_repeat Simple_repeat 1 45 0 262 321 86 21 chr1 121640234 121640421 -160553243 + MIR SINE MIR 28 226 -36 248 295 0 0 chr1 121644881 121644959 -160548705 + G-rich Low_complexity Low_complexity 1 78 0 276 317 104 6 chr1 121646705 121646852 -160546812 - MER5A DNA MER1_type -10 179 6 977 136 413 0 chr1 121647806 121648012 -160545652 - AluJb SINE Alu -21 291 1 463 295 64 83 chr1 121648115 121648351 -160545313 - L1ME4a LINE L1 -3 6118 5890 2229 116 13 3 chr1 121648351 121648654 -160545010 - AluSx SINE Alu -6 306 1 463 295 64 83 chr1 121648654 121648790 -160544874 - L1ME4a LINE L1 -231 5890 5753 632 247 113 5 chr1 121648828 121649022 -160544642 + MIR SINE MIR 48 262 0 475 343 19 14 chr1 121650731 121650944 -160542720 - MIR SINE MIR -29 233 20 281 308 51 22 chr1 121651328 121651503 -160542161 + MIR SINE MIR 21 198 -55 2403 88 7 0 chr1 121652043 121652348 -160541316 - AluSp SINE Alu -6 307 1 2450 66 0 3 chr1 121652376 121652702 -160540962 - AluSq SINE Alu 0 325 1 520 291 12 12 chr1 121652941 121653106 -160540558 - MIR SINE MIR -70 192 28 538 278 69 17 chr1 121653905 121654078 -160539586 - MER91A DNA MER1_type 0 196 15 218 237 85 0 chr1 121654508 121654567 -160539097 - MER91A DNA MER1_type -15 181 118 325 347 41 8 chr1 121654598 121654719 -160538945 - MER91A DNA MER1_type -45 151 27 1859 160 38 0 chr1 121655202 121655490 -160538174 - AluJo SINE Alu -13 299 1 3560 158 20 26 chr1 121656349 121656593 -160537071 + L1MB5 LINE L1 5447 5691 -483 2280 88 27 7 chr1 121656593 121656887 -160536777 + AluSx SINE Alu 3 302 -10 270 0 0 0 chr1 121656891 121656921 -160536743 + (CA)n Simple_repeat Simple_repeat 2 31 0 3560 158 20 26 chr1 121656921 121657403 -160536261 + L1MB5 LINE L1 5694 6174 0 234 314 47 0 chr1 121657417 121657503 -160536161 + MIR SINE MIR 118 207 -55 2684 36 10 0 chr1 121658614 121658919 -160534745 - AluY SINE Alu -3 308 1 537 227 62 9 chr1 121659401 121659585 -160534079 + MIR SINE MIR 63 262 0 189 0 0 0 chr1 121660053 121660074 -160533590 + (T)n Simple_repeat Simple_repeat 1 21 0 3347 179 19 9 chr1 121660296 121660984 -160532680 - L1 LINE L1 -846 5300 4606 2400 81 0 0 chr1 121660985 121661292 -160532372 + AluSx SINE Alu 1 307 0 405 133 0 0 chr1 121662090 121662150 -160531514 - L2 LINE L2 0 3272 3213 301 378 22 0 chr1 121662735 121662915 -160530749 - MIR SINE MIR -52 210 27 548 263 6 53 chr1 121663363 121663534 -160530130 - L2 LINE L2 0 3313 3151 412 209 215 45 chr1 121664335 121664512 -160529152 - MIR SINE MIR -31 231 25 648 184 121 44 chr1 121665870 121666076 -160527588 - MIR SINE MIR -13 249 28 213 362 64 0 chr1 121666710 121666804 -160526860 + MIR SINE MIR 38 137 -71 962 199 21 0 chr1 121667034 121667225 -160526439 - MIR SINE MIR -29 233 39 310 238 0 0 chr1 121667297 121667360 -160526304 + L2 LINE L2 3225 3287 -26 383 256 44 38 chr1 121668492 121668652 -160525012 - MIR SINE MIR -36 226 66 388 293 83 15 chr1 121668873 121669006 -160524658 + MIR SINE MIR 13 154 -108 321 287 50 0 chr1 121670568 121670669 -160522995 - MIR SINE MIR -73 189 84 2611 55 0 7 chr1 121670678 121670988 -160522676 - AluY SINE Alu -3 308 1 492 182 121 0 chr1 121671094 121671193 -160522471 + MER69 DNA AcHobo 37 147 -1079 230 241 0 72 chr1 121671187 121671270 -160522394 + MER69 DNA AcHobo 2447 2523 -3 * 2254 110 30 0 chr1 121671404 121671703 -160521961 - AluSx SINE Alu -4 308 1 321 289 19 95 chr1 121672246 121672457 -160521207 + L2 LINE L2 2877 3071 -201 1897 132 66 0 chr1 121672681 121672954 -160520710 + AluSx SINE Alu 2 292 -20 258 333 26 18 chr1 121673122 121673138 -160520526 - MLT1J1 LTR MaLR -231 178 164 1808 201 143 36 chr1 121673138 121673669 -160519995 - MLT1G LTR MaLR -2 588 1 258 333 26 18 chr1 121673669 121673766 -160519898 - MLT1J1 LTR MaLR -245 164 63 210 67 0 0 chr1 121673799 121673807 -160519857 + (GAA)n Simple_repeat Simple_repeat 1 8 -22 1828 171 47 0 chr1 121673807 121674105 -160519559 + AluJo SINE Alu 1 312 0 210 67 0 0 chr1 121674105 121674126 -160519538 + (GAA)n Simple_repeat Simple_repeat 7 30 0 2289 129 0 0 chr1 121674362 121674699 -160518965 - AluSx SINE Alu 0 312 1 798 270 78 77 chr1 121675013 121675225 -160518439 + L1MC4a LINE L1 5478 5688 -433 2527 91 0 0 chr1 121675225 121675534 -160518130 + AluSx SINE Alu 1 309 -3 798 270 78 77 chr1 121675534 121675949 -160517715 + L1MC4a LINE L1 5688 6108 -13 277 100 20 0 chr1 121676062 121676112 -160517552 + L1MB4 LINE L1 6128 6178 -2 1692 139 92 7 chr1 121676168 121676441 -160517223 + AluJo SINE Alu 6 301 -11 423 0 0 0 chr1 121676665 121676712 -160516952 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1728 113 97 0 chr1 121676712 121676960 -160516704 - AluSx SINE Alu -40 272 1 309 249 145 2 chr1 121677611 121677741 -160515923 + MIR SINE MIR 19 163 -62 1111 206 160 24 chr1 121677741 121678083 -160515581 - MLT1E2 LTR MaLR -4 622 206 2552 75 0 3 chr1 121678120 121678428 -160515236 - AluSq SINE Alu -6 307 1 286 81 0 0 chr1 121678442 121678479 -160515185 - U6 snRNA snRNA -5 102 66 518 263 8 0 chr1 121678493 121678611 -160515053 - MLT1E2 LTR MaLR -427 166 48 200 265 277 0 chr1 121678652 121678735 -160514929 + MIR SINE MIR 146 251 -11 2140 66 4 0 chr1 121679327 121679583 -160514081 - AluY SINE Alu -54 257 1 214 355 13 0 chr1 121679801 121679877 -160513787 - MIR SINE MIR -92 116 40 2310 85 48 0 chr1 121684251 121684544 -160509120 + AluSg SINE Alu 2 308 -2 2139 131 13 0 chr1 121684704 121685002 -160508662 + AluSq SINE Alu 1 302 -11 1975 101 72 4 chr1 121685426 121685703 -160507961 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 121685781 121685802 -160507862 + AT_rich Low_complexity Low_complexity 1 21 0 598 295 32 52 chr1 121685916 121686272 -160507392 + L1MC4a LINE L1 5124 5472 -649 2013 137 0 11 chr1 121686272 121686682 -160506982 - AluSx SINE Alu 0 407 1 598 295 32 52 chr1 121686682 121686861 -160506803 + L1MC4a LINE L1 5472 5653 -468 2080 122 11 0 chr1 121687056 121687358 -160506306 + AluSp SINE Alu 1 305 0 666 321 74 37 chr1 121687446 121687823 -160505841 + MLT1K LTR MaLR 132 522 -66 319 312 56 56 chr1 121688109 121688343 -160505321 + L1MC4a LINE L1 5690 5923 -1885 1491 229 88 38 chr1 121688850 121689330 -160504334 + MLT1D LTR MaLR 2 505 0 796 285 8 8 chr1 121689982 121690242 -160503422 - MIR SINE MIR -1 261 2 285 265 137 8 chr1 121690789 121690906 -160502758 + MIR3 SINE MIR 23 154 -54 189 297 76 59 chr1 121691022 121691140 -160502524 + MIR SINE MIR 88 207 -55 223 291 131 32 chr1 121692860 121693027 -160500637 - MIR SINE MIR -14 248 17 181 286 206 16 chr1 121693623 121693749 -160499915 - L2 LINE L2 -191 3081 2932 1746 161 59 3 chr1 121693792 121694114 -160499550 - MER2 DNA MER2_type -5 340 1 293 324 0 0 chr1 121694231 121694305 -160499359 - L2 LINE L2 -559 2755 2682 223 280 134 32 chr1 121695885 121696042 -160497622 - L2 LINE L2 -182 3090 2918 414 291 60 8 chr1 121696193 121696327 -160497337 + MIR SINE MIR 7 147 -115 228 225 84 14 chr1 121697743 121697814 -160495850 - MER94 DNA DNA -3 131 56 710 220 16 50 chr1 121698162 121698198 -160495466 - MIR SINE MIR -86 176 140 2381 102 3 0 chr1 121698198 121698493 -160495171 - AluSq SINE Alu -17 296 1 710 220 16 50 chr1 121698493 121698638 -160495026 - MIR SINE MIR -122 140 1 465 278 298 0 chr1 121699336 121699534 -160494130 - MIR SINE MIR 0 262 6 322 278 60 102 chr1 121700315 121700434 -160493230 - MIR SINE MIR -3 259 159 2026 164 0 0 chr1 121700434 121700732 -160492932 - AluSx SINE Alu -9 303 6 322 278 60 102 chr1 121700732 121700859 -160492805 - MIR SINE MIR -103 159 28 376 338 15 0 chr1 121701584 121701717 -160491947 - MIR SINE MIR -9 253 119 210 174 43 22 chr1 121702142 121702188 -160491476 + L2 LINE L2 3254 3300 -13 2223 130 0 0 chr1 121702957 121703258 -160490406 - AluSx SINE Alu -11 301 1 2150 167 61 47 chr1 121703329 121703545 -160490119 - L1MB2 LINE L1 -2 6169 5958 1956 144 3 16 chr1 121703545 121703850 -160489814 - AluJb SINE Alu -9 303 3 2150 167 61 47 chr1 121703850 121704124 -160489540 - L1MB2 LINE L1 -213 5958 5672 5079 71 16 9 chr1 121704339 121704785 -160488879 + LTR8 LTR ERV1 1 455 -236 2288 116 3 3 chr1 121704785 121705095 -160488569 - AluSg SINE Alu 0 310 1 5079 71 16 9 chr1 121705095 121705334 -160488330 + LTR8 LTR ERV1 455 691 0 43816 68 34 5 chr1 121705334 121706890 -160486774 + HUERS-P1 LTR ERV1 1 1512 -4751 1760 119 112 14 chr1 121706890 121707167 -160486497 - AluSq SINE Alu -9 304 1 43816 68 34 5 chr1 121707167 121709912 -160483752 + HUERS-P1 LTR ERV1 1512 4527 -1736 1329 178 104 62 chr1 121709912 121710344 -160483320 - LTR7 LTR ERV1 0 450 1 43816 68 34 5 chr1 121710344 121712132 -160481532 + HUERS-P1 LTR ERV1 4527 6263 0 4889 75 39 0 chr1 121712132 121712797 -160480867 + LTR8 LTR ERV1 1 691 0 365 228 16 71 chr1 121713077 121713204 -160480460 + MER112 DNA MER1_type 33 152 -108 268 225 175 0 chr1 121713207 121713287 -160480377 + MER5C DNA MER1_type 1 94 -230 3811 135 57 15 chr1 121713299 121713965 -160479699 + L1MB8 LINE L1 5379 6072 -106 187 250 73 15 chr1 121714219 121714287 -160479377 + L2 LINE L2 2687 2758 -556 203 253 131 20 chr1 121714641 121714740 -160478924 + L2 LINE L2 3175 3284 -29 257 326 47 29 chr1 121716310 121716482 -160477182 - L2 LINE L2 -177 3095 2921 296 273 93 0 chr1 121716533 121716662 -160477002 - MIR SINE MIR -19 243 101 1899 164 3 7 chr1 121717103 121717413 -160476251 + AluJo SINE Alu 1 309 -3 1922 148 39 31 chr1 121717610 121717910 -160475754 - MLT1A1 LTR MaLR -4 361 56 1644 50 80 0 chr1 121717910 121718111 -160475553 - AluY SINE Alu -12 299 83 1922 148 39 31 chr1 121718111 121718167 -160475497 - MLT1A1 LTR MaLR -309 56 2 8056 192 72 13 chr1 121718173 121719805 -160473859 - MLT1A1-int LTR MaLR -6 1729 2 1498 177 114 21 chr1 121719807 121720140 -160473524 - MLT1A1 LTR MaLR 0 365 2 29 28 0 0 chr1 121720207 121720243 -160473421 + AT_rich Low_complexity Low_complexity 1 36 0 516 314 118 59 chr1 121720293 121721057 -160472607 - L1MC4a LINE L1 -1743 6065 5257 186 43 0 0 chr1 121722585 121722608 -160471056 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 378 290 41 35 chr1 121722977 121723122 -160470542 - MER91B DNA MER1_type -13 177 32 294 29 0 0 chr1 121723762 121723797 -160469867 + (TG)n Simple_repeat Simple_repeat 1 35 0 228 35 0 0 chr1 121723894 121723923 -160469741 + (TG)n Simple_repeat Simple_repeat 1 29 0 41246 34 0 3 chr1 121724757 121729888 -160463776 - L1P LINE L1 -1027 5119 6 220 244 97 117 chr1 121729889 121730040 -160463624 - MIR SINE MIR -63 145 5 287 309 12 0 chr1 121730582 121730666 -160462998 - MIR3 SINE MIR -52 156 72 214 269 0 0 chr1 121734921 121734973 -160458691 + L2 LINE L2 3214 3265 -7 2132 133 33 46 chr1 121735924 121736382 -160457282 + L1MB4 LINE L1 5729 6180 0 1796 112 13 62 chr1 121736469 121736774 -160456890 + AluJb SINE Alu 1 290 -22 318 197 14 0 chr1 121737433 121737504 -160456160 + MIR3 SINE MIR 109 180 -28 264 234 54 27 chr1 121737703 121737777 -160455887 - MIR SINE MIR -62 146 90 343 303 0 0 chr1 121737872 121737981 -160455683 + L3 LINE CR1 1336 1444 -133 335 327 38 31 chr1 121738715 121738874 -160454790 + MER5B DNA MER1_type 18 177 -1 208 167 103 51 chr1 121738965 121739043 -160454621 + L3 LINE CR1 1280 1361 -216 269 312 98 2 chr1 121739097 121739237 -160454427 - MIR SINE MIR -40 168 18 267 191 0 0 chr1 121739425 121739488 -160454176 + (CA)n Simple_repeat Simple_repeat 1 63 0 298 266 91 68 chr1 121739814 121740077 -160453587 - L1ME4a LINE L1 -8 6113 5845 946 269 111 84 chr1 121741595 121742708 -160450956 + L2 LINE L2 1947 3172 -141 2236 104 7 0 chr1 121743029 121743327 -160450337 - AluSq SINE Alu -7 306 7 333 0 0 0 chr1 121745940 121745977 -160447687 + (TG)n Simple_repeat Simple_repeat 1 37 0 195 364 0 0 chr1 121749206 121749261 -160444403 + L2 LINE L2 3006 3060 -253 558 237 72 12 chr1 121749430 121749629 -160444035 - MIR SINE MIR -29 233 23 223 243 0 71 chr1 121752558 121752628 -160441036 - L2 LINE L2 -1 3312 3248 243 347 81 42 chr1 121752837 121753243 -160440421 + L2 LINE L2 2550 2971 -343 1692 199 6 6 chr1 121753408 121753735 -160439929 + LTR5 LTR ERVK 1 327 -642 827 84 0 0 chr1 121754790 121754897 -160438767 + U6 snRNA snRNA 1 107 0 339 131 0 0 chr1 121755227 121755288 -160438376 + L1MB7 LINE L1 6119 6179 -5 1695 162 50 14 chr1 121755566 121755863 -160437801 + AluSx SINE Alu 1 308 -4 1362 170 124 19 chr1 121756450 121756814 -160436850 - L1MB5 LINE L1 -8 6166 5765 270 0 0 0 chr1 121757515 121757545 -160436119 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 711 45 0 0 chr1 121757545 121757634 -160436030 - AluSc SINE Alu -35 274 186 356 34 102 0 chr1 121757736 121757795 -160435869 + L1MB8 LINE L1 6113 6177 -1 2414 83 0 10 chr1 121757805 121758118 -160435546 + AluY SINE Alu 1 310 -1 413 232 0 64 chr1 121758181 121758274 -160435390 + MER5C DNA MER1_type 208 293 -31 1677 124 0 0 chr1 121758274 121758500 -160435164 + AluSg/x SINE Alu 76 301 -9 413 232 0 64 chr1 121758500 121758531 -160435133 + MER5C DNA MER1_type 293 324 0 15049 21 1 0 chr1 121758565 121761019 -160432645 + L1PA3 LINE L1 3560 6015 -140 475 343 19 14 chr1 121762602 121762815 -160430849 - MIR SINE MIR -29 233 20 281 308 51 22 chr1 121763199 121763374 -160430290 + MIR SINE MIR 21 198 -55 2384 85 7 3 chr1 121763914 121764220 -160429444 - AluSp SINE Alu -6 307 1 2450 66 0 3 chr1 121764248 121764570 -160429094 - AluSq SINE Alu 0 321 1 520 291 12 12 chr1 121764809 121764974 -160428690 - MIR SINE MIR -70 192 28 538 278 69 17 chr1 121765773 121765946 -160427718 - MER91A DNA MER1_type 0 196 15 218 237 85 0 chr1 121766376 121766435 -160427229 - MER91A DNA MER1_type -15 181 118 325 347 41 8 chr1 121766466 121766587 -160427077 - MER91A DNA MER1_type -45 151 27 1859 160 38 0 chr1 121767070 121767358 -160426306 - AluJo SINE Alu -13 299 1 3560 158 20 26 chr1 121768217 121768461 -160425203 + L1MB5 LINE L1 5447 5691 -483 2280 88 27 7 chr1 121768461 121768755 -160424909 + AluSx SINE Alu 3 302 -10 324 0 0 0 chr1 121768759 121768795 -160424869 + (CA)n Simple_repeat Simple_repeat 2 37 0 3560 158 20 26 chr1 121768795 121769277 -160424387 + L1MB5 LINE L1 5694 6174 0 234 314 47 0 chr1 121769291 121769377 -160424287 + MIR SINE MIR 118 207 -55 2669 33 10 0 chr1 121770488 121770791 -160422873 - AluY SINE Alu -3 308 3 2020 166 9 3 chr1 121770841 121771178 -160422486 + LOR1b LTR ERV1 123 461 0 793 138 0 22 chr1 121771178 121771316 -160422348 + L1MB1 LINE L1 6000 6134 -34 1835 121 103 2 chr1 121771316 121771818 -160421846 + MER51A LTR ERV1 1 634 0 2599 251 46 74 chr1 121772109 121773321 -160420343 + MER110-int LTR ERV1 1295 2472 -2175 1211 273 38 71 chr1 121774143 121774231 -160419433 + MER110-int LTR ERV1 2458 2547 -2100 1088 161 6 0 chr1 121774231 121774405 -160419259 + FAM SINE Alu 1 175 0 1211 273 38 71 chr1 121774405 121774848 -160418816 + MER110-int LTR ERV1 2547 2971 -1676 350 0 44 0 chr1 121774943 121774988 -160418676 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 856 214 0 0 chr1 121774990 121775135 -160418529 - FRAM SINE Alu -31 145 1 2196 83 7 0 chr1 121775761 121776037 -160417627 + AluSp SINE Alu 3 280 -33 1285 33 0 27 chr1 121776038 121776222 -160417442 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 387 0 0 0 chr1 121776231 121776274 -160417390 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 666 263 55 5 chr1 121776382 121776599 -160417065 + L1M4 LINE L1 2474 2701 -3445 210 250 0 0 chr1 121776983 121777035 -160416629 + L2 LINE L2 3262 3313 0 2255 109 0 7 chr1 121777186 121777490 -160416174 + AluSx SINE Alu 1 302 -10 375 23 0 0 chr1 121778513 121778557 -160415107 + (TG)n Simple_repeat Simple_repeat 1 44 0 394 340 25 10 chr1 121781157 121781357 -160412307 - MIR SINE MIR 0 262 60 293 318 78 31 chr1 121782733 121782925 -160410739 + MIR SINE MIR 62 262 0 1522 190 28 3 chr1 121783800 121784089 -160409575 - AluJo SINE Alu -16 296 1 2198 251 89 30 chr1 121784540 121785340 -160408324 + L1ME3 LINE L1 5314 6160 -2 2435 77 3 7 chr1 121785348 121785646 -160408018 + AluSg SINE Alu 1 297 -13 222 276 31 92 chr1 121785715 121785878 -160407786 + L2 LINE L2 3116 3268 -4 518 339 67 37 chr1 121785923 121786298 -160407366 - L1ME4a LINE L1 -175 5946 5561 2436 103 0 0 chr1 121786310 121786622 -160407042 - AluSx SINE Alu 0 312 1 1857 175 71 35 chr1 121786989 121787424 -160406240 + MLT2B2 LTR ERVL 1 451 -64 186 43 0 0 chr1 121787522 121787545 -160406119 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1328 156 10 5 chr1 121788063 121788268 -160405396 - AluJb SINE Alu -22 290 85 1549 120 0 9 chr1 121788688 121788904 -160404760 - AluSg/x SINE Alu -12 298 85 836 222 42 14 chr1 121788911 121789123 -160404541 - MER20 DNA MER1_type -1 218 1 253 215 25 58 chr1 121789140 121789261 -160404403 - MER112 DNA MER1_type -82 178 62 433 250 0 0 chr1 121789737 121789833 -160403831 - FRAM SINE Alu -27 149 54 4612 103 0 42 chr1 121791602 121792320 -160401344 - LTR12 LTR ERV1 0 688 1 2229 119 3 13 chr1 121793648 121793958 -160399706 + AluSx SINE Alu 1 307 -5 2420 91 3 3 chr1 121793960 121794269 -160399395 + AluSp SINE Alu 1 309 -4 545 296 21 11 chr1 121794273 121794462 -160399202 - MIR SINE MIR -12 250 60 2475 93 0 0 chr1 121794831 121795132 -160398532 - AluSx SINE Alu -11 301 1 2016 91 4 0 chr1 121795596 121795848 -160397816 - AluSx SINE Alu -46 266 14 213 337 86 27 chr1 121796320 121796507 -160397157 + MIR SINE MIR 65 262 0 438 256 96 50 chr1 121797748 121797830 -160395834 - HAL1 LINE L1 -826 1681 1604 2296 133 20 0 chr1 121797830 121798183 -160395481 - THE1B LTR MaLR -4 360 1 438 256 96 50 chr1 121798183 121798299 -160395365 - HAL1 LINE L1 -903 1604 1474 21 0 0 0 chr1 121798300 121798321 -160395343 + AT_rich Low_complexity Low_complexity 1 21 0 1907 152 3 7 chr1 121798310 121798613 -160395051 - AluSg SINE Alu -8 302 1 2149 253 98 21 chr1 121798964 121799766 -160393898 + L1ME3 LINE L1 5297 6160 -2 433 239 19 75 chr1 121799824 121799983 -160393681 + L2 LINE L2 3160 3309 -4 1882 143 26 13 chr1 121800092 121800399 -160393265 - AluSx SINE Alu -1 311 1 1729 130 3 54 chr1 121800427 121800742 -160392922 + AluSc SINE Alu 1 299 -10 395 344 69 22 chr1 121800783 121801059 -160392605 - L1ME LINE L1 -305 5816 5528 2171 104 0 23 chr1 121801151 121801458 -160392206 + AluSx SINE Alu 1 300 -12 1900 182 47 79 chr1 121801704 121802236 -160391428 + MLT2B2 LTR ERVL 1 515 0 720 254 45 5 chr1 121803164 121803365 -160390299 - MER20 DNA MER1_type -1 218 10 26 0 0 0 chr1 121803399 121803425 -160390239 + AT_rich Low_complexity Low_complexity 1 26 0 2015 83 0 0 chr1 121804190 121804485 -160389179 - AluY SINE Alu 0 312 18 197 296 0 0 chr1 121805537 121805591 -160388073 + L2 LINE L2 3219 3272 0 4310 60 4 7 chr1 121805609 121806132 -160387532 + LTR10C LTR ERV1 1 521 -70 4955 48 11 10 chr1 121806132 121807150 -160386514 + MER11A LTR ERVK 1 1261 -5 633 65 0 0 chr1 121807150 121807227 -160386437 + LTR10C LTR ERV1 515 591 0 351 0 0 0 chr1 121807786 121807825 -160385839 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5164 68 3 3 chr1 121808270 121808928 -160384736 + PABL_A LTR ERV1 1 658 -2 182 283 22 0 chr1 121812034 121812080 -160381584 + MIR SINE MIR 209 255 -7 504 278 50 40 chr1 121812614 121812812 -160380852 - MIR SINE MIR -3 259 60 2038 120 0 0 chr1 121813185 121813484 -160380180 - AluSx SINE Alu -2 310 12 1984 105 14 0 chr1 121814021 121814307 -160379357 - AluSq SINE Alu -10 303 14 234 313 130 39 chr1 121814758 121814966 -160378698 + MIR SINE MIR 36 262 0 359 271 90 58 chr1 121816207 121816289 -160377375 - HAL1 LINE L1 -826 1681 1603 2261 139 20 0 chr1 121816289 121816642 -160377022 - THE1B LTR MaLR -4 360 1 359 271 90 58 chr1 121816642 121816747 -160376917 - HAL1 LINE L1 -904 1603 1488 22 0 0 0 chr1 121816760 121816782 -160376882 + AT_rich Low_complexity Low_complexity 1 22 0 1787 150 0 7 chr1 121816782 121817068 -160376596 - AluSg SINE Alu -26 284 1 260 216 54 27 chr1 121817267 121817341 -160376323 + HERV9 LTR ERV1 2658 2733 -5666 235 208 0 0 chr1 121817346 121817394 -160376270 - MLT1G LTR MaLR -81 509 462 2247 247 93 31 chr1 121817436 121818249 -160375415 + L1ME3 LINE L1 5297 6160 -2 384 251 24 78 chr1 121818265 121818432 -160375232 + L2 LINE L2 3152 3309 -4 1925 158 0 0 chr1 121818557 121818861 -160374803 - AluSx SINE Alu -8 304 1 1955 125 0 3 chr1 121818890 121819186 -160374478 + AluSc SINE Alu 1 295 -14 246 269 108 48 chr1 121819337 121819523 -160374141 - L1ME LINE L1 -418 5703 5507 1909 129 0 24 chr1 121819596 121819914 -160373750 + AluSx SINE Alu 1 312 0 1814 198 59 34 chr1 121820164 121820604 -160373060 + MLT2B2 LTR ERVL 1 451 -64 720 254 45 5 chr1 121821609 121821810 -160371854 - MER20 DNA MER1_type -1 218 10 26 0 0 0 chr1 121821844 121821870 -160371794 + AT_rich Low_complexity Low_complexity 1 26 0 2015 83 0 0 chr1 121822635 121822930 -160370734 - AluY SINE Alu 0 312 18 197 296 0 0 chr1 121823982 121824036 -160369628 + L2 LINE L2 3219 3272 0 4320 60 4 7 chr1 121824054 121824577 -160369087 + LTR10C LTR ERV1 1 521 -70 5152 49 5 10 chr1 121824577 121825608 -160368056 + MER11A LTR ERVK 1 1266 0 24214 69 6 11 chr1 121825608 121828656 -160365008 + HERVK11 LTR ERVK 1 3033 -4920 15112 50 30 0 chr1 121828666 121830485 -160363179 + HERVK11 LTR ERVK 5331 7203 -750 787 53 0 0 chr1 121830488 121830583 -160363081 + HERVK11 LTR ERVK 7859 7953 0 5006 54 10 4 chr1 121830583 121831606 -160362058 + MER11A LTR ERVK 1 1266 0 595 79 0 0 chr1 121831606 121831679 -160361985 + LTR10C LTR ERV1 519 591 0 221 0 0 33 chr1 121832235 121832265 -160361399 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 5093 72 6 3 chr1 121832712 121833368 -160360296 + PABL_A LTR ERV1 1 658 -2 189 333 0 0 chr1 121836707 121836755 -160356909 + MIR SINE MIR 208 255 -7 464 343 20 10 chr1 121837286 121837487 -160356177 - MIR SINE MIR 0 262 60 315 310 83 50 chr1 121838868 121839100 -160354564 + MIR SINE MIR 23 262 0 1772 123 48 14 chr1 121840883 121841176 -160352488 + AluJb SINE Alu 2 304 -8 859 225 28 22 chr1 121841371 121841553 -160352111 - MER58A DNA MER1_type 0 224 42 4350 175 42 10 chr1 121841555 121842423 -160351241 + L1MB3 LINE L1 5289 6183 0 470 269 153 60 chr1 121842998 121843299 -160350365 - MLT1J2 LTR MaLR -38 412 84 766 286 112 51 chr1 121843526 121843894 -160349770 - LTR67 LTR ERVL -54 503 113 1373 218 139 47 chr1 121843894 121844362 -160349302 - MLT1J LTR MaLR 0 511 1 362 241 84 0 chr1 121844362 121844413 -160349251 - LTR67 LTR ERVL -460 97 40 901 201 37 0 chr1 121844694 121844858 -160348806 + FAM SINE Alu 1 170 -5 1764 131 6 54 chr1 121845527 121845840 -160347824 - AluJb SINE Alu -14 298 1 1083 198 21 25 chr1 121846294 121846531 -160347133 - MER4B LTR ERV1 0 610 375 * 1296 143 0 15 chr1 121846523 121846726 -160346938 + MER4A LTR ERV1 442 641 -23 1944 134 0 13 chr1 121846726 121847025 -160346639 + AluSx SINE Alu 1 295 -17 276 30 0 0 chr1 121847025 121847058 -160346606 + (GGGAA)n Simple_repeat Simple_repeat 2 34 0 245 93 0 124 chr1 121847279 121847376 -160346288 + (CAAGG)n Simple_repeat Simple_repeat 1 85 0 252 59 0 0 chr1 121847384 121847418 -160346246 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 2233 93 87 0 chr1 121847459 121847780 -160345884 - MER4-int LTR ERV1 -742 5856 5508 3238 109 5 2 chr1 121847780 121848211 -160345453 + LTR3 LTR ERVK 1 432 0 5077 212 16 14 chr1 121848211 121849433 -160344231 + HERVK3 LTR ERVK 40 1300 -5943 483 78 0 0 chr1 121849437 121849501 -160344163 - HERVH LTR ERV1 -7649 64 1 2062 109 79 5 chr1 121849501 121849868 -160343796 - LTR7 LTR ERV1 0 450 1 3322 239 49 64 chr1 121849870 121850917 -160342747 - MER4A-int LTR ERV1 -4732 1866 836 266 75 0 0 chr1 121850994 121851034 -160342630 - MER4A-int LTR ERV1 -5872 726 687 2127 122 0 0 chr1 121851038 121851334 -160342330 - AluSc SINE Alu -13 296 1 378 122 14 14 chr1 121851343 121851417 -160342247 - MER4A-int LTR ERV1 -5774 824 751 2759 125 55 19 chr1 121851777 121852387 -160341277 - MER4A-int LTR ERV1 -5925 673 1 1764 152 3 49 chr1 121852390 121852752 -160340912 - MER4A LTR ERV1 0 664 261 539 124 31 21 chr1 121852752 121852849 -160340815 - MER4A LTR ERV1 -566 98 1 402 306 41 8 chr1 121853117 121853238 -160340426 - L2 LINE L2 -25 3288 3164 685 293 108 28 chr1 121853356 121853680 -160339984 - MLT1I LTR MaLR -47 362 13 446 254 207 42 chr1 121853822 121853859 -160339805 - MIR SINE MIR -13 249 219 1995 146 0 0 chr1 121853859 121854153 -160339511 - AluSx SINE Alu -18 294 1 446 254 207 42 chr1 121854153 121854186 -160339478 - MIR SINE MIR -43 219 193 1879 200 89 32 chr1 121854186 121854647 -160339017 - LTR2B LTR ERV1 0 490 4 446 254 207 42 chr1 121854647 121854788 -160338876 - MIR SINE MIR -69 193 2 293 305 70 31 chr1 121854869 121854997 -160338667 - L2 LINE L2 -493 2821 2689 1282 230 53 29 chr1 121855885 121856388 -160337276 + MLT1E LTR MaLR 1 564 -29 792 191 54 36 chr1 121856401 121856604 -160337060 - MER61D LTR ERV1 -10 492 297 1429 175 30 27 chr1 121857720 121858017 -160335647 - AluJo SINE Alu -14 298 1 442 273 211 37 chr1 121858090 121858176 -160335488 - L1MC/D LINE L1 -414 5752 5682 2494 68 0 0 chr1 121858176 121858483 -160335181 - AluSc SINE Alu -2 307 1 442 273 211 37 chr1 121858483 121858691 -160334973 - L1MC/D LINE L1 -484 5682 5409 312 71 18 71 chr1 121858913 121858969 -160334695 - MER41B LTR ERV1 -102 533 481 789 209 138 91 chr1 121861081 121861381 -160332283 - Charlie4a DNA MER1_type -1453 508 175 2022 141 3 3 chr1 121861381 121861693 -160331971 + AluJb SINE Alu 1 312 0 789 209 138 91 chr1 121861693 121861876 -160331788 - Charlie4a DNA MER1_type -1786 175 2 1096 233 23 81 chr1 121863784 121864131 -160329533 - L2 LINE L2 0 3313 2987 1161 192 108 19 chr1 121864419 121864726 -160328938 - L2 LINE L2 -1101 2213 1880 461 183 71 79 chr1 121865141 121865267 -160328397 - MIR SINE MIR -1 261 137 222 231 0 0 chr1 121865268 121865320 -160328344 + T-rich Low_complexity Low_complexity 1 52 0 7121 30 4 0 chr1 121865323 121866154 -160327510 - L1PA4 LINE L1 -3 6152 5319 1701 52 97 78 chr1 121866268 121866537 -160327127 - LTR12 LTR ERV1 -440 274 1 2063 120 3 13 chr1 121867865 121868174 -160325490 + AluSx SINE Alu 1 306 -6 2285 85 3 3 chr1 121868176 121868482 -160325182 + AluSp SINE Alu 1 306 -7 580 301 20 10 chr1 121868482 121868678 -160324986 - MIR SINE MIR -5 257 60 2309 93 0 0 chr1 121869047 121869347 -160324317 - AluSx SINE Alu -12 300 1 1885 92 4 0 chr1 121869812 121870063 -160323601 - AluSq SINE Alu -48 265 14 233 313 130 39 chr1 121870514 121870722 -160322942 + MIR SINE MIR 36 262 0 459 246 102 15 chr1 121871898 121872045 -160321619 - HAL1 LINE L1 -650 1857 1724 2303 128 23 3 chr1 121872045 121872398 -160321266 - THE1B LTR MaLR -4 360 1 459 246 102 15 chr1 121872398 121872514 -160321150 - HAL1 LINE L1 -783 1724 1474 21 0 0 0 chr1 121872515 121872536 -160321128 + AT_rich Low_complexity Low_complexity 1 21 0 1744 144 3 7 chr1 121872543 121872828 -160320836 - AluSg SINE Alu -26 284 1 2149 253 98 21 chr1 121873179 121873981 -160319683 + L1ME3 LINE L1 5297 6160 -2 433 239 19 75 chr1 121874039 121874198 -160319466 + L2 LINE L2 3160 3309 -4 1882 143 26 13 chr1 121874307 121874614 -160319050 - AluSx SINE Alu -1 311 1 1795 128 3 48 chr1 121874642 121874955 -160318709 + AluSc SINE Alu 1 299 -10 395 344 69 22 chr1 121874996 121875272 -160318392 - L1ME LINE L1 -305 5816 5528 2171 104 0 23 chr1 121875364 121875671 -160317993 + AluSx SINE Alu 1 300 -12 1900 182 47 79 chr1 121875918 121876450 -160317214 + MLT2B2 LTR ERVL 1 515 0 720 254 45 5 chr1 121877377 121877578 -160316086 - MER20 DNA MER1_type -1 218 10 26 0 0 0 chr1 121877612 121877638 -160316026 + AT_rich Low_complexity Low_complexity 1 26 0 2051 75 0 0 chr1 121878403 121878698 -160314966 - AluY SINE Alu 0 312 18 197 296 0 0 chr1 121879750 121879804 -160313860 + L2 LINE L2 3219 3272 0 4280 60 6 7 chr1 121879822 121880344 -160313320 + LTR10C LTR ERV1 1 521 -70 5152 49 5 10 chr1 121880344 121881375 -160312289 + MER11A LTR ERVK 1 1266 0 24205 69 6 11 chr1 121881375 121884423 -160309241 + HERVK11 LTR ERVK 1 3033 -4920 15074 50 30 0 chr1 121884433 121886251 -160307413 + HERVK11 LTR ERVK 5331 7203 -750 787 53 0 0 chr1 121886254 121886349 -160307315 + HERVK11 LTR ERVK 7859 7953 0 1521 51 10 14 chr1 121886349 121886616 -160307048 + MER11A LTR ERVK 1 363 -903 285 311 104 6 chr1 121888504 121888651 -160305013 - MER5A DNA MER1_type -10 179 6 867 136 413 0 chr1 121889605 121889811 -160303853 - AluJb SINE Alu -21 291 1 350 213 85 11 chr1 121889914 121890008 -160303656 - L1ME4a LINE L1 -3 6118 6018 2290 92 0 0 chr1 121890150 121890453 -160303211 - AluSc SINE Alu -6 303 1 2201 53 46 7 chr1 121890683 121890967 -160302697 - AluY SINE Alu -16 295 1 616 209 54 23 chr1 121891793 121891922 -160301742 - FLAM_A SINE Alu 0 133 1 874 252 51 17 chr1 121893208 121893442 -160300222 - MIR SINE MIR 0 262 21 24 77 0 0 chr1 121893525 121893577 -160300087 + AT_rich Low_complexity Low_complexity 1 52 0 274 220 68 0 chr1 121894375 121894434 -160299230 + L2 LINE L2 3210 3272 0 2003 102 0 40 chr1 121895176 121895479 -160298185 + AluSc SINE Alu 2 292 -17 1805 152 0 31 chr1 121895551 121895873 -160297791 + AluJo SINE Alu 1 312 0 1452 159 52 48 chr1 121896775 121897084 -160296580 + AluJo SINE Alu 1 310 -2 2157 88 0 3 chr1 121897145 121897458 -160296206 - AluSx SINE Alu 0 314 3 1844 152 3 92 chr1 121898205 121898586 -160295078 + MER7A DNA MER2_type 1 345 -1 2291 62 10 0 chr1 121898768 121899059 -160294605 + AluY SINE Alu 1 294 -17 2415 93 3 0 chr1 121900565 121900875 -160292789 - AluSq SINE Alu 0 313 3 24 32 0 0 chr1 121901077 121901108 -160292556 + AT_rich Low_complexity Low_complexity 1 31 0 2101 96 4 4 chr1 121901488 121901758 -160291906 + AluSg SINE Alu 1 270 -40 1678 107 0 5 chr1 121902026 121902250 -160291414 + AluSc SINE Alu 82 304 -5 2334 104 0 9 chr1 121902698 121903014 -160290650 + AluSp SINE Alu 1 313 0 2206 129 0 0 chr1 121903151 121903454 -160290210 + AluSq SINE Alu 1 303 -10 2310 77 37 0 chr1 121903690 121903989 -160289675 + AluSg SINE Alu 1 310 0 2113 264 69 50 chr1 121906319 121907188 -160286476 + L2 LINE L2 1205 2056 -1258 2116 116 0 7 chr1 121907188 121907494 -160286170 - AluSx SINE Alu 0 304 1 2113 264 69 50 chr1 121907494 121907591 -160286073 + L2 LINE L2 2056 2194 -1120 2242 109 0 0 chr1 121907591 121907884 -160285780 - AluSx SINE Alu -19 293 1 2113 264 69 50 chr1 121907884 121907920 -160285744 + L2 LINE L2 2194 2228 -1086 1002 204 49 0 chr1 121907922 121908147 -160285517 - MIR SINE MIR -2 260 25 708 224 34 98 chr1 121908148 121908412 -160285252 + L2 LINE L2 2210 2456 -858 471 178 104 59 chr1 121908412 121908547 -160285117 - Charlie7 DNA MER1_type -2412 200 60 547 318 153 18 chr1 121908561 121909170 -160284494 + L2 LINE L2 2605 3313 0 1421 149 47 81 chr1 121910540 121910836 -160282828 + AluJo SINE Alu 13 298 -14 1925 140 3 38 chr1 121910950 121911265 -160282399 - AluJo SINE Alu -6 306 3 332 167 0 0 chr1 121911689 121911743 -160281921 + MIR SINE MIR 204 257 -5 2349 90 3 3 chr1 121912657 121912957 -160280707 + AluSq SINE Alu 1 300 -13 215 310 0 28 chr1 121913829 121913900 -160279764 + L2 LINE L2 3242 3310 -3 222 270 0 54 chr1 121914171 121914245 -160279419 + L2 LINE L2 3244 3313 0 2077 101 42 11 chr1 121914253 121914539 -160279125 - AluSg1 SINE Alu -14 295 1 220 325 0 33 chr1 121915158 121915309 -160278355 + A-rich Low_complexity Low_complexity 5 150 0 1782 146 58 14 chr1 121916110 121916404 -160277260 - AluJb SINE Alu -5 307 1 1332 121 0 19 chr1 121917094 121917300 -160276364 + MER2 DNA MER2_type 9 210 -135 202 109 65 0 chr1 121917396 121917442 -160276222 + (CATA)n Simple_repeat Simple_repeat 2 50 0 185 279 16 16 chr1 121917562 121917623 -160276041 + L2 LINE L2 2915 2975 -338 247 293 0 0 chr1 121917715 121917773 -160275891 + L2 LINE L2 2997 3054 -218 1259 179 39 16 chr1 121917964 121918253 -160275411 + L1MD3 LINE L1 7489 7993 -2 1165 193 10 0 chr1 121918671 121918868 -160274796 + AluJo SINE Alu 1 199 -113 418 136 296 0 chr1 121918943 121919024 -160274640 - FLAM_C SINE Alu -17 126 22 2275 111 0 16 chr1 121920308 121920623 -160273041 - AluSg SINE Alu 0 310 1 2278 115 0 0 chr1 121921074 121921379 -160272285 - AluSx SINE Alu -7 305 1 254 136 0 0 chr1 121921524 121921568 -160272096 - L2 LINE L2 -9 3304 3261 1946 140 11 0 chr1 121922285 121922564 -160271100 + AluSx SINE Alu 1 282 -30 21 71 0 0 chr1 121922611 121922653 -160271011 + AT_rich Low_complexity Low_complexity 1 42 0 216 325 38 0 chr1 121922734 121922814 -160270850 - L2 LINE L2 -792 2522 2440 1449 155 55 52 chr1 121923193 121923483 -160270181 + AluJb SINE Alu 16 306 -6 426 69 0 0 chr1 121923510 121923568 -160270096 + (CA)n Simple_repeat Simple_repeat 2 59 0 2847 197 31 3 chr1 121924025 121924568 -160269096 - L1 LINE L1 -1194 4952 4388 194 0 39 0 chr1 121924568 121924594 -160269070 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 2847 197 31 3 chr1 121924594 121924668 -160268996 - L1 LINE L1 -1758 4388 4318 * 6337 106 32 8 chr1 121924663 121925418 -160268246 + L1PB1 LINE L1 5005 5791 -360 198 0 0 0 chr1 121925418 121925440 -160268224 + (CA)n Simple_repeat Simple_repeat 2 23 0 6337 106 32 8 chr1 121925440 121925809 -160267855 + L1PB1 LINE L1 5791 6150 -1 368 302 129 10 chr1 121926472 121926674 -160266990 - MIR SINE MIR -30 232 7 424 156 0 0 chr1 121926950 121927014 -160266650 + AluJ/FLAM SINE Alu 6 69 -243 2376 86 0 7 chr1 121927385 121927687 -160265977 - AluSx SINE Alu -12 300 1 891 215 97 0 chr1 121927842 121928079 -160265585 - MIR SINE MIR 0 262 3 2534 54 0 3 chr1 121928733 121929030 -160264634 + AluY SINE Alu 1 296 -15 197 250 0 0 chr1 121929118 121929162 -160264502 - L2 LINE L2 -11 3302 3259 705 195 69 6 chr1 121932317 121932491 -160261173 - MIR SINE MIR -6 256 72 231 206 191 92 chr1 121937032 121937163 -160256501 + MIR3 SINE MIR 5 148 -60 1102 217 8 8 chr1 121937236 121937485 -160256179 - MIR SINE MIR -10 252 4 343 256 78 0 chr1 121939965 121940083 -160253581 + MIR SINE MIR 34 161 -47 235 221 35 67 chr1 121940710 121940817 -160252847 - MIR SINE MIR -84 124 27 522 257 128 1 chr1 121941031 121941253 -160252411 - MIR SINE MIR -6 256 15 199 308 13 26 chr1 121941630 121941708 -160251956 + MIR SINE MIR 19 95 -113 23 0 0 0 chr1 121941995 121942018 -160251646 + AT_rich Low_complexity Low_complexity 1 23 0 2281 108 0 0 chr1 121942024 121942342 -160251322 + AluSq SINE Alu 1 318 0 315 219 110 12 chr1 121944028 121944110 -160249554 - MIR SINE MIR -123 139 50 394 261 100 28 chr1 121944446 121944626 -160249038 - MIR3 SINE MIR -4 204 12 371 328 95 42 chr1 121944881 121945143 -160248521 - L2 LINE L2 -5 3267 2992 1689 126 52 19 chr1 121945435 121945602 -160248062 - AluJb SINE Alu -14 298 138 262 23 47 23 chr1 121945602 121945645 -160248019 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1727 96 0 29 chr1 121945645 121945885 -160247779 - AluY SINE Alu -29 282 50 1689 126 52 19 chr1 121945885 121945985 -160247679 - AluJb SINE Alu -173 139 21 228 182 0 0 chr1 121946685 121946729 -160246935 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1465 245 42 40 chr1 121946853 121947302 -160246362 + MLT1J2 LTR MaLR 1 450 0 294 295 102 18 chr1 121948138 121948304 -160245360 - MIR3 SINE MIR -23 185 6 592 321 74 37 chr1 121999631 122000008 -160193656 - MLT1K LTR MaLR -66 522 132 2061 122 11 0 chr1 122000096 122000398 -160193266 - AluSp SINE Alu 0 305 1 349 225 38 0 chr1 122000597 122000677 -160192987 - L1ME LINE L1 -472 5649 5567 212 271 143 48 chr1 122000918 122001128 -160192536 - L2 LINE L2 -173 3099 2870 436 296 59 12 chr1 122001231 122001403 -160192261 + MIR SINE MIR 7 191 -17 2228 111 30 0 chr1 122002392 122002689 -160190975 + AluSx SINE Alu 1 306 -6 486 182 121 0 chr1 122002902 122003001 -160190663 - MER69 DNA AcHobo -1079 147 37 2597 55 0 7 chr1 122003107 122003417 -160190247 + AluY SINE Alu 1 308 -3 337 287 50 0 chr1 122003426 122003527 -160190137 + MIR SINE MIR 84 189 -73 266 257 51 64 chr1 122003876 122004057 -160189607 + MIR3 SINE MIR 15 192 -70 400 284 82 22 chr1 122005321 122005455 -160188209 - MIR SINE MIR -108 154 13 410 256 44 38 chr1 122005676 122005836 -160187828 + MIR SINE MIR 66 226 -36 372 245 10 10 chr1 122006204 122006302 -160187362 + MLT2F LTR ERVL 37 134 -529 240 271 93 37 chr1 122006343 122006450 -160187214 + MLT2F LTR ERVL 231 343 -320 837 338 24 6 chr1 122006604 122006932 -160186732 - L3 LINE CR1 -578 999 666 6308 154 16 31 chr1 122006944 122008108 -160185556 + L1P LINE L1 11 1156 -4990 5598 87 50 3 chr1 122008108 122008853 -160184811 - LTR17 LTR ERV1 0 780 1 2302 52 14 0 chr1 122008853 122009141 -160184523 - HERV17 LTR ERV1 0 8626 8335 267 75 0 0 chr1 122009131 122009171 -160184493 - HERV17 LTR ERV1 -1078 7548 7509 * 7869 54 6 3 chr1 122009163 122010178 -160183486 - HERV17 LTR ERV1 -2607 6019 5002 284 95 0 0 chr1 122010278 122010320 -160183344 + MER69 DNA AcHobo 106 147 -1079 2221 114 30 0 chr1 122010532 122010829 -160182835 - AluSx SINE Alu -6 306 1 363 284 19 95 chr1 122011372 122011583 -160182081 + L2 LINE L2 2877 3071 -201 1891 132 66 0 chr1 122011807 122012080 -160181584 + AluSx SINE Alu 2 292 -20 1991 198 143 36 chr1 122012264 122012795 -160180869 - MLT1G LTR MaLR -2 588 1 235 350 21 0 chr1 122012795 122012892 -160180772 - MLT1J1 LTR MaLR -285 161 63 210 67 0 0 chr1 122012925 122012933 -160180731 + (GAA)n Simple_repeat Simple_repeat 1 8 -22 1824 171 47 0 chr1 122012933 122013231 -160180433 + AluJo SINE Alu 1 312 0 210 67 0 0 chr1 122013231 122013252 -160180412 + (GAA)n Simple_repeat Simple_repeat 7 30 0 2286 129 0 0 chr1 122013488 122013825 -160179839 - AluSx SINE Alu 0 312 1 679 266 95 49 chr1 122014139 122014351 -160179313 + L1MC4a LINE L1 5478 5679 -2129 2542 90 0 0 chr1 122014351 122014662 -160179002 + AluSx SINE Alu 1 311 -1 679 266 95 49 chr1 122014662 122014859 -160178805 + L1MC4a LINE L1 5679 5906 -1902 1289 144 52 4 chr1 122014963 122015192 -160178472 - MER41B LTR ERV1 -265 370 131 187 345 36 24 chr1 122015978 122016062 -160177602 - L3 LINE CR1 -1412 165 81 348 343 73 11 chr1 122016531 122016709 -160176955 - L2 LINE L2 -18 3295 3107 661 158 38 0 chr1 122016807 122016940 -160176724 + L1MC1 LINE L1 5292 5429 -915 * 1372 169 48 58 chr1 122016937 122017250 -160176414 + L1MC1 LINE L1 6018 6327 -6 548 325 81 74 chr1 122017285 122017814 -160175850 - L2 LINE L2 -338 2976 2444 832 210 174 5 chr1 122018137 122018356 -160175308 - MIR SINE MIR 0 262 7 2292 103 27 0 chr1 122018466 122018767 -160174897 + AluSc SINE Alu 1 309 0 183 204 0 0 chr1 122018865 122018909 -160174755 + GA-rich Low_complexity Low_complexity 1 44 0 1875 134 3 41 chr1 122018924 122019215 -160174449 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr1 122019215 122019238 -160174426 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 305 221 26 97 chr1 122019498 122019611 -160174053 + MER5B DNA MER1_type 66 170 -8 210 37 0 0 chr1 122020082 122020109 -160173555 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2333 81 0 3 chr1 122020110 122020393 -160173271 - AluSc SINE Alu -27 282 1 1322 137 19 38 chr1 122020825 122021037 -160172627 + AluJo SINE Alu 86 293 -19 2412 98 7 0 chr1 122021114 122021420 -160172244 - AluSx SINE Alu -4 308 1 304 169 70 28 chr1 122021478 122021549 -160172115 - L1MC2 LINE L1 0 6344 6271 677 279 55 38 chr1 122021549 122021914 -160171750 - L1ME4a LINE L1 -229 5892 5522 701 209 31 0 chr1 122021961 122022124 -160171540 + MLT1D LTR MaLR 21 188 -317 1632 227 88 38 chr1 122022856 122023336 -160170328 + MLT1D LTR MaLR 2 505 0 854 285 8 8 chr1 122023988 122024248 -160169416 - MIR SINE MIR -1 261 2 315 265 137 8 chr1 122024795 122024912 -160168752 + MIR3 SINE MIR 23 154 -54 199 301 108 0 chr1 122025063 122025146 -160168518 + MIR SINE MIR 116 207 -55 240 294 129 32 chr1 122026862 122027031 -160166633 - MIR SINE MIR -12 250 17 214 286 206 16 chr1 122027628 122027754 -160165910 - L2 LINE L2 -191 3081 2932 1719 165 59 3 chr1 122027797 122028119 -160165545 - MER2 DNA MER2_type -5 340 1 268 280 237 17 chr1 122028236 122028354 -160165310 - L2 LINE L2 -559 2755 2612 2061 124 3 10 chr1 122029539 122029830 -160163834 + AluSg SINE Alu 1 289 -21 946 96 29 0 chr1 122029832 122029968 -160163696 + LTR23 LTR ERV1 298 437 0 1214 182 50 86 chr1 122029982 122030378 -160163286 + MLT1B LTR MaLR 6 387 -3 300 331 159 6 chr1 122030533 122030696 -160162968 + L3 LINE CR1 462 649 -928 8319 62 4 0 chr1 122030703 122032536 -160161128 - L1PA6 LINE L1 -1 6153 4299 15083 76 12 6 chr1 122032536 122034700 -160158964 - L1PA6 LINE L1 -2815 3331 1154 2301 70 0 10 chr1 122034701 122035015 -160158649 + LTR17 LTR ERV1 1 311 -469 7498 60 4 6 chr1 122035017 122035992 -160157672 + HERV17 LTR ERV1 1044 2016 -6610 * 11663 57 3 1 chr1 122035975 122037444 -160156220 + HERV17 LTR ERV1 2430 3902 -4724 283 100 20 0 chr1 122037766 122037816 -160155848 + L1MB4 LINE L1 6128 6178 -2 1684 139 92 7 chr1 122037872 122038145 -160155519 + AluJo SINE Alu 6 301 -11 351 0 0 0 chr1 122038369 122038408 -160155256 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1750 117 92 0 chr1 122038408 122038657 -160155007 - AluSx SINE Alu -40 272 1 248 219 143 0 chr1 122040371 122040476 -160153188 + LTR33 LTR ERVL 235 354 -167 293 259 0 12 chr1 122040528 122040609 -160153055 + LTR33 LTR ERVL 433 512 -9 339 234 0 0 chr1 122041282 122041346 -160152318 + L2 LINE L2 3204 3267 -5 354 251 147 2 chr1 122041448 122041577 -160152087 + MIR SINE MIR 19 163 -62 1075 203 161 25 chr1 122041577 122041919 -160151745 - MLT1E2 LTR MaLR -4 622 206 2546 75 0 3 chr1 122041956 122042264 -160151400 - AluSq SINE Alu -6 307 1 285 81 0 0 chr1 122042278 122042315 -160151349 - U6 snRNA snRNA -5 102 66 503 263 8 0 chr1 122042329 122042447 -160151217 - MLT1E2 LTR MaLR -427 166 48 217 265 277 0 chr1 122042488 122042571 -160151093 + MIR SINE MIR 146 251 -11 2137 70 0 0 chr1 122043163 122043420 -160150244 - AluY SINE Alu -54 257 1 325 303 218 10 chr1 122043542 122043744 -160149920 - MIR3 SINE MIR -14 248 7 2307 85 48 0 chr1 122048083 122048378 -160145286 + AluSg SINE Alu 2 310 0 2132 131 13 0 chr1 122048534 122048832 -160144832 + AluSq SINE Alu 1 302 -11 1921 108 72 4 chr1 122049256 122049533 -160144131 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 122049611 122049632 -160144032 + AT_rich Low_complexity Low_complexity 1 21 0 375 298 14 23 chr1 122049746 122050053 -160143611 + L1MC/D LINE L1 5124 5431 -744 2006 137 0 11 chr1 122050102 122050515 -160143149 - AluSx SINE Alu 0 410 1 758 214 16 50 chr1 122051482 122051518 -160142146 - MIR SINE MIR -86 176 140 2372 102 3 0 chr1 122051518 122051813 -160141851 - AluSq SINE Alu -17 296 1 758 214 16 50 chr1 122051813 122051958 -160141706 - MIR SINE MIR -122 140 1 497 278 298 0 chr1 122052657 122052855 -160140809 - MIR SINE MIR 0 262 6 359 278 60 102 chr1 122053636 122053755 -160139909 - MIR SINE MIR -3 259 159 2011 165 0 0 chr1 122053755 122054052 -160139612 - AluSx SINE Alu -10 302 6 359 278 60 102 chr1 122054052 122054179 -160139485 - MIR SINE MIR -103 159 28 386 338 15 0 chr1 122054904 122055037 -160138627 - MIR SINE MIR -9 253 119 209 130 65 43 chr1 122055462 122055508 -160138156 + L2 LINE L2 3254 3300 -13 2231 126 0 0 chr1 122056277 122056578 -160137086 - AluSx SINE Alu -11 301 1 2141 162 63 44 chr1 122056649 122056865 -160136799 - L1MB2 LINE L1 -2 6169 5959 1917 148 3 16 chr1 122056865 122057170 -160136494 - AluJb SINE Alu -9 303 3 2141 162 63 44 chr1 122057170 122057428 -160136236 - L1MB2 LINE L1 -212 5959 5686 5345 72 18 4 chr1 122057659 122058101 -160135563 + LTR8 LTR ERV1 1 457 -234 2286 106 3 3 chr1 122058101 122058404 -160135260 - AluSg SINE Alu -7 303 1 5345 72 18 4 chr1 122058404 122058643 -160135021 + LTR8 LTR ERV1 457 691 0 44017 65 37 8 chr1 122058643 122060199 -160133465 + HUERS-P1 LTR ERV1 1 1512 -4751 1747 120 112 14 chr1 122060199 122060475 -160133189 - AluSq SINE Alu -10 303 1 44017 65 37 8 chr1 122060475 122063221 -160130443 + HUERS-P1 LTR ERV1 1512 4527 -1736 1474 171 107 65 chr1 122063221 122063653 -160130011 - LTR7 LTR ERV1 0 450 1 44017 65 37 8 chr1 122063653 122065441 -160128223 + HUERS-P1 LTR ERV1 4527 6263 0 5156 77 39 0 chr1 122065441 122066106 -160127558 + LTR8 LTR ERV1 1 691 0 362 228 16 71 chr1 122066386 122066513 -160127151 + MER112 DNA MER1_type 33 152 -108 281 225 175 0 chr1 122066516 122066596 -160127068 + MER5C DNA MER1_type 1 94 -230 4303 127 73 13 chr1 122066608 122067362 -160126302 + L1MB8 LINE L1 5379 6177 -1 2391 83 0 10 chr1 122067372 122067685 -160125979 + AluY SINE Alu 1 310 -1 430 232 0 64 chr1 122067748 122067841 -160125823 + MER5C DNA MER1_type 208 293 -31 1676 124 0 0 chr1 122067841 122068067 -160125597 + AluSg/x SINE Alu 78 303 -9 430 232 0 64 chr1 122068067 122068098 -160125566 + MER5C DNA MER1_type 293 324 0 31 20 0 20 chr1 122068114 122068132 -160125532 + AT_rich Low_complexity Low_complexity 1 18 -30 15872 21 2 0 chr1 122068132 122070722 -160122942 + L1PA3 LINE L1 3560 6151 -4 31 20 0 20 chr1 122070722 122070752 -160122912 + AT_rich Low_complexity Low_complexity 18 48 0 281 243 40 0 chr1 122070752 122070826 -160122838 + MER112 DNA MER1_type 178 254 -6 223 352 104 49 chr1 122070993 122071340 -160122324 + L2 LINE L2 2890 3255 -17 997 259 15 8 chr1 122072106 122072365 -160121299 + MIR SINE MIR 2 262 0 273 273 116 33 chr1 122072455 122072576 -160121088 - MIR SINE MIR -32 230 100 1032 159 4 21 chr1 122072766 122072994 -160120670 + MER84 LTR ERVI 1 159 -348 1675 122 0 25 chr1 122072994 122073268 -160120396 - AluSg SINE Alu 0 319 52 1911 130 68 12 chr1 122073430 122073768 -160119896 + MER84 LTR ERVI 147 503 -4 2054 163 3 0 chr1 122074440 122074747 -160118917 + AluJo SINE Alu 1 308 -4 2229 111 3 3 chr1 122074876 122075173 -160118491 - AluSx SINE Alu -14 298 2 231 337 20 0 chr1 122075204 122075305 -160118359 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 551 249 55 55 chr1 122076199 122076400 -160117264 - L3 LINE CR1 -247 1330 1130 946 177 35 10 chr1 122076426 122076624 -160117040 + L1MC4a LINE L1 7508 7710 -98 2296 107 3 19 chr1 122076745 122077053 -160116611 - AluSx SINE Alu -9 303 1 264 263 9 61 chr1 122077434 122077548 -160116116 + MLT1K LTR MaLR 471 578 -10 196 287 96 51 chr1 122078465 122078622 -160115042 + MER5B DNA MER1_type 7 170 -8 950 286 28 4 chr1 122079181 122079436 -160114228 - MIR SINE MIR 0 262 2 341 349 84 23 chr1 122079574 122079666 -160113998 + HAL1 LINE L1 1240 1325 -1182 2113 124 10 0 chr1 122079666 122079956 -160113708 + AluSx SINE Alu 20 312 0 341 349 84 23 chr1 122079956 122080078 -160113586 + HAL1 LINE L1 1325 1467 -1040 326 292 52 42 chr1 122080791 122081017 -160112647 + L1MC/D LINE L1 5493 5724 -397 476 355 5 0 chr1 122081518 122081704 -160111960 - L1ME4a LINE L1 -262 5859 5673 537 248 29 113 chr1 122082845 122083155 -160110509 + L2 LINE L2 3011 3294 -19 733 197 8 0 chr1 122083240 122083367 -160110297 - FLAM_A SINE Alu -4 129 2 225 257 75 17 chr1 122083756 122083863 -160109801 - MIR SINE MIR -55 153 39 194 206 79 16 chr1 122084331 122084394 -160109270 + MIR SINE MIR 123 189 -73 2389 82 3 7 chr1 122084526 122084829 -160108835 + AluSq SINE Alu 1 302 -11 1084 236 190 10 chr1 122084981 122085397 -160108267 - L2 LINE L2 -421 2893 2403 307 270 191 11 chr1 122085418 122085596 -160108068 - MIR SINE MIR -19 243 34 240 268 412 0 chr1 122086378 122086531 -160107133 - MIR SINE MIR -19 243 28 360 222 14 0 chr1 122088103 122088175 -160105489 - MIR SINE MIR -129 133 61 282 222 0 0 chr1 122090004 122090067 -160103597 + L1MC/D LINE L1 5696 5758 -2027 248 282 94 0 chr1 122090509 122090594 -160103070 - MIR SINE MIR -76 132 40 357 355 67 24 chr1 122091791 122092208 -160101456 + L2 LINE L2 1877 2311 -1003 1137 314 196 30 chr1 122092625 122093440 -160100224 - L2 LINE L2 -2 3270 2592 1056 131 38 6 chr1 122093440 122093623 -160100041 - MER53 DNA DNA 0 189 1 1137 314 196 30 chr1 122093623 122094332 -160099332 - L2 LINE L2 -680 2592 2002 2195 117 0 19 chr1 122094332 122094641 -160099023 - AluSx SINE Alu -9 303 1 1137 314 196 30 chr1 122094641 122095331 -160098333 - L2 LINE L2 -1270 2002 664 194 367 116 12 chr1 122095906 122096165 -160097499 + L2 LINE L2 2678 2963 -351 379 308 127 55 chr1 122096339 122096592 -160097072 - L2 LINE L2 -2 3270 3000 238 370 52 13 chr1 122096614 122096768 -160096896 + L2 LINE L2 3106 3265 -7 245 294 8 24 chr1 122097991 122098107 -160095557 + MIR SINE MIR 37 147 -62 1242 251 100 49 chr1 122098192 122098852 -160094812 - L2 LINE L2 -3 3310 2608 595 261 197 31 chr1 122099320 122099676 -160093988 - L2 LINE L2 -27 3286 2872 408 329 124 38 chr1 122099695 122100326 -160093338 + L2 LINE L2 2586 3271 -1 195 311 162 30 chr1 122100402 122100698 -160092966 - L2 LINE L2 -359 2955 2621 1081 251 72 14 chr1 122102247 122102610 -160091054 + L2 LINE L2 2930 3313 0 731 216 39 0 chr1 122102671 122102824 -160090840 + MER58A DNA MER1_type 1 159 0 278 311 108 70 chr1 122102887 122103228 -160090436 + L2 LINE L2 2906 3259 -13 2245 109 0 26 chr1 122103229 122103531 -160090133 + AluSx SINE Alu 1 294 -18 341 138 0 17 chr1 122103584 122103642 -160090022 + MER58 DNA MER1_type 2364 2420 0 760 216 44 17 chr1 122103642 122103823 -160089841 - MIR SINE MIR -64 198 13 1533 161 89 47 chr1 122104183 122104563 -160089101 - MSTD LTR MaLR 0 396 1 1984 110 70 0 chr1 122104643 122104916 -160088748 + AluSq SINE Alu 4 295 -18 270 0 0 0 chr1 122105039 122105069 -160088595 + (CA)n Simple_repeat Simple_repeat 2 31 0 210 284 284 0 chr1 122105409 122105518 -160088146 - MIR SINE MIR -55 207 68 224 309 128 59 chr1 122105945 122106350 -160087314 + L2 LINE L2 2827 3259 -13 242 273 207 54 chr1 122106921 122107163 -160086501 - L2 LINE L2 0 3272 2994 234 309 200 9 chr1 122108037 122108147 -160085517 + L2 LINE L2 3183 3313 0 388 331 66 18 chr1 122108862 122109028 -160084636 - MIR SINE MIR -61 201 28 363 344 20 7 chr1 122109073 122109224 -160084440 - MIR SINE MIR -51 211 59 857 276 0 53 chr1 122109996 122110074 -160083590 - MIR SINE MIR -30 232 151 2484 53 0 0 chr1 122110074 122110383 -160083281 - AluY SINE Alu 0 309 1 857 276 0 53 chr1 122110383 122110546 -160083118 - MIR SINE MIR -111 151 3 451 194 19 19 chr1 122112146 122112301 -160081363 + GA-rich Low_complexity Low_complexity 3 157 0 224 114 45 0 chr1 122112334 122112378 -160081286 + GA-rich Low_complexity Low_complexity 4 49 0 514 311 57 22 chr1 122113383 122113611 -160080053 - MIR SINE MIR -17 245 10 496 254 124 6 chr1 122113645 122113822 -160079842 - MIR SINE MIR -1 261 64 187 286 20 0 chr1 122113824 122113873 -160079791 - MIR SINE MIR -168 94 45 297 243 114 0 chr1 122114149 122114219 -160079445 + L2 LINE L2 3235 3312 -1 180 289 0 19 chr1 122114235 122114287 -160079377 - L2 LINE L2 -2 3270 3220 351 269 38 38 chr1 122114457 122114617 -160079047 - L2 LINE L2 -181 3091 2932 312 83 0 0 chr1 122115589 122115637 -160078027 + (TG)n Simple_repeat Simple_repeat 2 49 0 201 39 0 0 chr1 122115831 122115857 -160077807 + (CGAG)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr1 122115898 122115921 -160077743 + GC_rich Low_complexity Low_complexity 1 23 0 27 87 0 0 chr1 122115941 122116010 -160077654 + GC_rich Low_complexity Low_complexity 1 69 0 215 175 0 0 chr1 122118972 122119012 -160074652 - L2 LINE L2 -217 3055 3016 307 217 141 82 chr1 122120147 122120331 -160073333 - L3 LINE CR1 -2 1575 1381 208 273 0 0 chr1 122120951 122121006 -160072658 - MIR SINE MIR -177 85 31 233 288 179 27 chr1 122121117 122121374 -160072290 + L2 LINE L2 2487 2782 -532 215 372 58 19 chr1 122122539 122122695 -160070969 - L2 LINE L2 0 3272 3111 616 266 4 71 chr1 122122723 122122949 -160070715 - L2 LINE L2 -1 3312 3102 1328 276 177 31 chr1 122123124 122124054 -160069610 - L2 LINE L2 -341 2973 1908 1800 189 33 0 chr1 122124179 122124481 -160069183 - AluJb SINE Alu 0 312 1 344 315 8 16 chr1 122124516 122124630 -160069034 - MER5A DNA MER1_type -2 187 73 1734 110 4 0 chr1 122124630 122124867 -160068797 + AluSx SINE Alu 1 238 -74 344 315 8 16 chr1 122124867 122124879 -160068785 - MER5A DNA MER1_type -116 73 62 279 0 0 0 chr1 122124880 122124911 -160068753 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1043 138 13 0 chr1 122125226 122125378 -160068286 - AluJb SINE Alu -36 276 123 1397 94 0 0 chr1 122125379 122125549 -160068115 - AluSg SINE Alu -140 170 1 271 372 20 0 chr1 122125743 122125891 -160067773 - L2 LINE L2 -1153 2161 2011 591 326 44 39 chr1 122126013 122126607 -160067057 + L2 LINE L2 2671 3270 -2 2680 239 104 18 chr1 122130635 122131481 -160062183 - L3 LINE CR1 -8 1569 651 206 182 36 0 chr1 122131945 122132000 -160061664 + (ACTG)n Simple_repeat Simple_repeat 3 59 0 255 344 11 0 chr1 122132016 122132109 -160061555 + (ACTG)n Simple_repeat Simple_repeat 1 94 0 580 217 29 51 chr1 122136573 122136748 -160056916 + MER5B DNA MER1_type 2 172 -6 888 163 48 0 chr1 122136775 122136941 -160056723 - MER3 DNA MER1_type -81 128 2 252 250 36 0 chr1 122137355 122137411 -160056253 + L2 LINE L2 3247 3304 -9 405 220 48 35 chr1 122137816 122137836 -160055828 + MIR SINE MIR 30 48 -173 1680 195 19 13 chr1 122137836 122138144 -160055520 + AluJb SINE Alu 1 310 -2 405 220 48 35 chr1 122138144 122138255 -160055409 + MIR SINE MIR 48 154 -67 2448 89 0 0 chr1 122138265 122138558 -160055106 + AluSx SINE Alu 1 293 -19 501 259 109 21 chr1 122139970 122140163 -160053501 - MIR SINE MIR -16 246 37 180 0 0 0 chr1 122141063 122141083 -160052581 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3842 231 26 50 chr1 122141083 122141404 -160052260 + L1M4c LINE L1 727 1054 -5509 2167 103 0 4 chr1 122141404 122141676 -160051988 + AluSc SINE Alu 19 289 -20 3842 231 26 50 chr1 122141676 122141946 -160051718 + L1M4c LINE L1 1054 1329 -5234 2354 109 3 0 chr1 122141946 122142248 -160051416 + AluSq SINE Alu 1 303 -10 3842 231 26 50 chr1 122142248 122142408 -160051256 + L1M4c LINE L1 1329 1491 -5072 2120 95 9 3 chr1 122142408 122142734 -160050930 - L1MA3 LINE L1 0 6305 5978 3842 231 26 50 chr1 122142734 122143408 -160050256 + L1M4c LINE L1 1491 2293 -4270 523 257 19 2 chr1 122143593 122143768 -160049896 - MIR SINE MIR -67 141 12 1757 138 3 82 chr1 122143850 122144169 -160049495 + AluJb SINE Alu 1 294 -18 665 215 80 29 chr1 122144170 122144444 -160049220 - L1MC5 LINE L1 -63 7898 7611 1088 223 43 16 chr1 122144445 122144768 -160048896 - L1MC5 LINE L1 -379 7582 7251 653 231 118 47 chr1 122144789 122144965 -160048699 + L1ME4a LINE L1 5730 5892 -229 2040 168 0 0 chr1 122144965 122145268 -160048396 + AluSx SINE Alu 1 303 -9 653 231 118 47 chr1 122145268 122145455 -160048209 + L1ME4a LINE L1 5892 6119 -2 3775 96 4 0 chr1 122145516 122146025 -160047639 + MER1A DNA MER1_type 19 529 0 313 231 13 13 chr1 122146561 122146639 -160047025 + MIR3 SINE MIR 117 194 -14 640 201 124 39 chr1 122146907 122146997 -160046667 - L1ME4a LINE L1 -1 6120 6039 2445 94 0 0 chr1 122146997 122147295 -160046369 + AluSx SINE Alu 1 298 -14 640 201 124 39 chr1 122147295 122147487 -160046177 - L1ME4a LINE L1 -82 6039 5814 461 149 0 0 chr1 122147641 122147715 -160045949 + MIR SINE MIR 85 158 -104 1852 111 58 0 chr1 122148274 122148535 -160045129 - AluY SINE Alu 0 311 36 2411 98 0 0 chr1 122148756 122149063 -160044601 - AluSq SINE Alu 0 313 7 264 296 120 0 chr1 122149819 122149927 -160043737 - MIR SINE MIR -56 206 86 374 288 45 18 chr1 122149953 122150064 -160043600 + L2 LINE L2 3141 3254 -18 1609 183 33 76 chr1 122150277 122150345 -160043319 - MLT1D LTR MaLR 0 505 436 2146 138 0 0 chr1 122150345 122150643 -160043021 + AluSx SINE Alu 1 298 -14 1609 183 33 76 chr1 122150643 122151029 -160042635 - MLT1D LTR MaLR -69 436 1 347 325 32 25 chr1 122151044 122151201 -160042463 + L2 LINE L2 3155 3312 -1 518 230 158 0 chr1 122152061 122152200 -160041464 - MIR SINE MIR -54 208 48 2312 119 0 3 chr1 122152200 122152511 -160041153 + AluSx SINE Alu 1 310 -2 351 308 76 42 chr1 122153417 122153706 -160039958 - L1ME4a LINE L1 -2191 5617 5319 1771 163 0 3 chr1 122153855 122154163 -160039501 + AluJb SINE Alu 1 307 0 2157 103 0 0 chr1 122154284 122154593 -160039071 + AluSx SINE Alu 1 309 0 24 0 0 0 chr1 122154623 122154647 -160039017 + AT_rich Low_complexity Low_complexity 1 24 0 1825 163 0 14 chr1 122154647 122154942 -160038722 - AluJb SINE Alu -21 291 1 207 0 0 0 chr1 122155117 122155140 -160038524 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 1102 271 72 45 chr1 122155140 122155752 -160037912 - L2 LINE L2 -13 3300 2671 481 333 93 51 chr1 122155933 122156291 -160037373 - L1ME4a LINE L1 -1602 4544 4146 2337 93 0 16 chr1 122156291 122156601 -160037063 - AluSg1 SINE Alu -4 305 1 481 333 93 51 chr1 122156601 122156875 -160036789 - L1ME4a LINE L1 -2000 4146 3885 1551 87 0 46 chr1 122157325 122157544 -160036120 - AluSg SINE Alu -101 209 1 286 283 87 0 chr1 122157905 122157997 -160035667 - MIR SINE MIR -111 151 52 577 242 17 51 chr1 122158298 122158476 -160035188 + MER5A DNA MER1_type 16 187 -2 1465 219 112 30 chr1 122158801 122159202 -160034462 + MLT1E LTR MaLR 152 585 -8 22 35 0 0 chr1 122159293 122159322 -160034342 + AT_rich Low_complexity Low_complexity 1 29 0 2486 201 71 59 chr1 122159325 122159591 -160034073 + L1ME1 LINE L1 5423 5684 -482 2168 97 42 0 chr1 122159591 122159879 -160033785 + AluSx SINE Alu 2 301 -11 2486 201 71 59 chr1 122159879 122160254 -160033410 + L1ME1 LINE L1 5684 6078 -88 2103 107 0 0 chr1 122160254 122160573 -160033091 - AluSc SINE Alu 0 319 1 2486 201 71 59 chr1 122160573 122160659 -160033005 + L1ME1 LINE L1 6078 6161 -5 363 237 128 19 chr1 122160784 122160940 -160032724 - L1MC4a LINE L1 -1928 5880 5708 826 256 58 61 chr1 122160953 122161316 -160032348 - L1MC4a LINE L1 -2181 5627 5266 266 274 14 14 chr1 122161317 122161390 -160032274 - LTR16A1 LTR ERVL -1 456 384 27 49 0 0 chr1 122161916 122161957 -160031707 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr1 122162252 122162280 -160031384 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr1 122162732 122162759 -160030905 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 230 297 0 0 chr1 122162996 122163060 -160030604 + L2 LINE L2 3249 3312 -1 220 343 95 51 chr1 122163143 122163280 -160030384 + L2 LINE L2 3080 3222 -50 520 235 99 37 chr1 122163428 122163590 -160030074 + MIR3 SINE MIR 9 180 -28 1989 101 52 11 chr1 122163710 122163997 -160029667 + AluSx SINE Alu 1 299 -13 468 254 88 73 chr1 122164095 122164300 -160029364 - MIR SINE MIR -53 209 2 289 284 0 0 chr1 122165585 122165659 -160028005 - MIR SINE MIR -6 256 183 188 259 74 19 chr1 122165712 122165766 -160027898 - MIR SINE MIR -77 185 129 1049 172 256 0 chr1 122165774 122166024 -160027640 - MSTC LTR MaLR -4 424 111 198 71 0 0 chr1 122166048 122166076 -160027588 + (T)n Simple_repeat Simple_repeat 1 28 0 2165 109 3 0 chr1 122166467 122166760 -160026904 + AluSx SINE Alu 1 294 -18 778 120 0 0 chr1 122166832 122166940 -160026724 - MSTC LTR MaLR -320 108 1 373 226 38 38 chr1 122166944 122167050 -160026614 - MIR SINE MIR -139 123 18 12520 178 42 30 chr1 122167428 122170472 -160023192 + L1MC1 LINE L1 84 3089 -3517 1980 176 41 27 chr1 122170472 122170841 -160022823 + MLT1A2 LTR MaLR 1 374 0 12520 178 42 30 chr1 122170841 122170934 -160022730 + L1MC1 LINE L1 3089 3179 -3427 2233 39 73 14 chr1 122170934 122171220 -160022444 + AluY SINE Alu 1 303 -8 12520 178 42 30 chr1 122171220 122171901 -160021763 + L1MC1 LINE L1 3179 3850 -2756 1908 121 11 7 chr1 122171901 122172173 -160021491 + AluJo SINE Alu 24 296 -16 12520 178 42 30 chr1 122172173 122173372 -160020292 + L1MC1 LINE L1 3850 5033 -1573 2223 114 7 0 chr1 122173372 122173680 -160019984 + AluSg SINE Alu 1 310 0 12520 178 42 30 chr1 122173680 122173916 -160019748 + L1MC1 LINE L1 5033 5265 -1341 3826 134 25 36 chr1 122173916 122174129 -160019535 + L1MB3 LINE L1 5544 5758 -425 1400 214 144 31 chr1 122174129 122174512 -160019152 + MSTB LTR MaLR 1 426 0 3826 134 25 36 chr1 122174512 122174941 -160018723 + L1MB3 LINE L1 5758 6179 -4 12520 178 42 30 chr1 122174941 122175324 -160018340 + L1MC1 LINE L1 5265 5863 -743 800 175 15 7 chr1 122175324 122175461 -160018203 + MSTB1 LTR MaLR 180 317 -115 4738 145 18 4 chr1 122175461 122176190 -160017474 + L1MC1 LINE L1 5874 6612 -1 4483 203 84 22 chr1 122176234 122177442 -160016222 - L1MD2 LINE L1 -237 6122 4991 2546 57 0 0 chr1 122177442 122177739 -160015925 - AluY SINE Alu -14 297 1 4483 203 84 22 chr1 122177739 122178301 -160015363 - L1MD2 LINE L1 -1368 4991 4243 261 0 0 0 chr1 122178301 122178330 -160015334 + (TG)n Simple_repeat Simple_repeat 1 29 0 4483 203 84 22 chr1 122178330 122178427 -160015237 - L1MD2 LINE L1 -2116 4243 4154 525 189 131 49 chr1 122178422 122178669 -160014995 - L1 LINE L1 -2191 3955 3651 * 565 247 94 6 chr1 122179449 122179619 -160014045 - MIR SINE MIR -3 259 75 1925 144 14 0 chr1 122179809 122180101 -160013563 + AluJo SINE Alu 1 296 -16 732 218 89 19 chr1 122180137 122180394 -160013270 - L1ME4a LINE L1 -17 6104 5830 267 339 37 0 chr1 122181363 122181472 -160012192 + MIR3 SINE MIR 13 125 -83 284 347 138 37 chr1 122181595 122181973 -160011691 + L2 LINE L2 2848 3263 -9 525 261 9 0 chr1 122183494 122183605 -160010059 + L2 LINE L2 3142 3253 -19 230 274 134 30 chr1 122184195 122184388 -160009276 - MIR SINE MIR -44 218 9 246 246 70 0 chr1 122185197 122185254 -160008410 + MER91C DNA MER1_type 50 110 -30 308 344 70 4 chr1 122185670 122185895 -160007769 + L2 LINE L2 2788 3037 -235 184 264 23 69 chr1 122185966 122186053 -160007611 + L2 LINE L2 3189 3271 -1 21 0 0 0 chr1 122187048 122187069 -160006595 + AT_rich Low_complexity Low_complexity 1 21 0 2176 66 38 14 chr1 122187686 122187973 -160005691 + AluSg SINE Alu 1 294 -16 215 252 135 45 chr1 122188560 122188671 -160004993 + L2 LINE L2 3132 3252 -20 309 257 119 20 chr1 122191302 122191403 -160002261 + L2 LINE L2 3192 3302 -11 247 271 34 0 chr1 122192381 122192440 -160001224 + MIR SINE MIR 84 144 -118 883 136 0 8 chr1 122193943 122194075 -159999589 - FLAM_C SINE Alu -2 131 1 330 218 205 26 chr1 122194712 122194868 -159998796 + MIR SINE MIR 3 186 -76 448 246 107 8 chr1 122194907 122195029 -159998635 - MER94 DNA DNA 0 134 1 2349 86 0 10 chr1 122196683 122196987 -159996677 + AluSc SINE Alu 1 301 -8 220 196 43 0 chr1 122197978 122198024 -159995640 + L2 LINE L2 3261 3308 -5 1911 111 0 85 chr1 122198812 122199148 -159994516 - AluSq SINE Alu 0 311 2 1987 106 46 11 chr1 122200500 122200784 -159992880 + AluSx SINE Alu 3 296 -16 339 259 47 0 chr1 122200954 122201039 -159992625 - L2 LINE L2 -39 3274 3186 488 205 0 0 chr1 122201136 122201219 -159992445 - Tigger3(Golem) DNA MER2_type -1 3028 2946 1070 151 106 0 chr1 122201221 122201400 -159992264 - Tigger3(Golem) DNA MER2_type -2829 200 3 26 30 0 0 chr1 122202855 122202888 -159990776 + AT_rich Low_complexity Low_complexity 1 33 0 885 165 0 0 chr1 122202898 122203031 -159990633 + FLAM_C SINE Alu 1 133 0 2145 118 3 0 chr1 122203048 122203337 -159990327 - AluSq SINE Alu -23 290 1 1860 142 37 56 chr1 122203391 122203443 -159990221 - L1MA9 LINE L1 0 6312 6261 1341 192 59 28 chr1 122203443 122203729 -159989935 + AluJo SINE Alu 1 295 -17 1860 142 37 56 chr1 122203729 122204086 -159989578 - L1MA9 LINE L1 -51 6261 5911 21 0 0 0 chr1 122204259 122204280 -159989384 + AT_rich Low_complexity Low_complexity 1 21 0 621 135 39 0 chr1 122204307 122204411 -159989253 - AluJb SINE Alu -2 310 203 189 50 50 25 chr1 122205291 122205331 -159988333 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 2386 81 3 0 chr1 122205750 122206045 -159987619 - AluSx SINE Alu -16 296 1 1957 269 123 47 chr1 122206091 122208010 -159985654 + L1MC4 LINE L1 5831 8025 -17 603 208 48 16 chr1 122209197 122209322 -159984342 + FLAM_A SINE Alu 2 130 -3 2185 84 44 10 chr1 122212569 122212865 -159980799 - AluSg1 SINE Alu -3 306 1 868 239 11 0 chr1 122215203 122215387 -159978277 + MER5A DNA MER1_type 4 189 0 314 290 59 12 chr1 122217684 122217853 -159975811 + L1ME4a LINE L1 5750 5926 -195 28 38 0 19 chr1 122217960 122217982 -159975682 + AT_rich Low_complexity Low_complexity 1 22 -30 2153 115 0 0 chr1 122217982 122218269 -159975395 + AluSx SINE Alu 1 287 -25 28 38 0 19 chr1 122218269 122218299 -159975365 + AT_rich Low_complexity Low_complexity 22 52 0 2436 96 0 0 chr1 122218876 122219188 -159974476 - AluSx SINE Alu 0 312 1 297 301 118 0 chr1 122219369 122219572 -159974092 - L1ME4a LINE L1 -204 5917 5691 535 279 101 11 chr1 122224759 122224963 -159968701 + MIR SINE MIR 2 221 -41 1867 120 64 0 chr1 122226064 122226355 -159967309 + AluSx SINE Alu 1 308 0 487 239 0 52 chr1 122226418 122226552 -159967112 - MER5B DNA MER1_type -51 127 1 192 77 0 0 chr1 122227463 122227489 -159966175 + (A)n Simple_repeat Simple_repeat 1 26 0 238 205 348 36 chr1 122229069 122229181 -159964483 + MER69A DNA AcHobo 31 177 0 1738 134 58 4 chr1 122229197 122229474 -159964190 - AluJb SINE Alu 0 312 21 780 218 30 5 chr1 122229501 122229698 -159963966 - MLT1A1 LTR MaLR 0 365 164 270 313 48 0 chr1 122229718 122229801 -159963863 - L2 LINE L2 -31 3282 3196 1646 233 296 29 chr1 122230044 122230604 -159963060 + L1MC4 LINE L1 6471 6881 -1161 2279 110 0 7 chr1 122230604 122230914 -159962750 - AluSx SINE Alu -4 308 1 1646 233 296 29 chr1 122230914 122231119 -159962545 + L1MC4 LINE L1 6881 7030 -1012 2866 6 0 0 chr1 122231119 122231430 -159962234 - AluY SINE Alu 0 311 1 1646 233 296 29 chr1 122231430 122231800 -159961864 + L1MC4 LINE L1 7030 7910 -132 1371 181 67 7 chr1 122232095 122232377 -159961287 + AluJo SINE Alu 1 299 -13 1481 184 69 22 chr1 122232571 122232891 -159960773 + MER58B DNA MER1_type 5 339 -2 2287 114 0 9 chr1 122233300 122233615 -159960049 + AluSq SINE Alu 1 312 -1 2194 120 0 3 chr1 122233828 122234128 -159959536 - AluSx SINE Alu -13 299 1 21 36 0 0 chr1 122234170 122234198 -159959466 + AT_rich Low_complexity Low_complexity 1 28 0 2065 83 10 56 chr1 122234263 122234565 -159959099 - AluY SINE Alu -23 288 1 921 92 0 0 chr1 122234588 122234708 -159958956 - AluY SINE Alu -191 120 1 1682 170 24 7 chr1 122235023 122235312 -159958352 - AluJo SINE Alu -18 294 1 1222 124 0 0 chr1 122235981 122236150 -159957514 - AluSg/x SINE Alu -1 311 143 3917 105 2 0 chr1 122236158 122236711 -159956953 - MER41A LTR ERV1 0 554 1 182 115 0 0 chr1 122236725 122236751 -159956913 - MIR SINE MIR -112 150 125 996 113 0 0 chr1 122236980 122237113 -159956551 - FLAM_C SINE Alu 0 133 1 342 288 24 0 chr1 122237152 122237277 -159956387 - L1ME LINE L1 -377 5744 5617 1238 287 164 19 chr1 122237592 122238324 -159955340 + L2 LINE L2 2296 3113 -200 341 151 37 47 chr1 122238357 122238479 -159955185 + MER67A LTR ERV1 1 119 -347 824 146 6 38 chr1 122238490 122238648 -159955016 - MSTC LTR MaLR -1 427 275 2276 110 3 0 chr1 122238806 122239105 -159954559 + AluSx SINE Alu 1 300 -12 248 282 0 14 chr1 122239332 122239403 -159954261 - MIR SINE MIR -8 254 185 309 224 134 45 chr1 122239415 122239549 -159954115 - L2 LINE L2 0 3313 3168 342 291 0 0 chr1 122239815 122239901 -159953763 + MIR3 SINE MIR 111 196 -12 223 323 10 62 chr1 122239931 122240027 -159953637 - MIR SINE MIR -15 247 157 299 246 29 0 chr1 122240873 122240942 -159952722 - MIR SINE MIR -106 102 32 586 158 115 6 chr1 122240980 122241133 -159952531 - L1MB4 LINE L1 0 6178 6009 963 301 253 47 chr1 122242164 122242752 -159950912 + L3 LINE CR1 307 773 -804 658 63 32 0 chr1 122242752 122242847 -159950817 + L1PB1 LINE L1 6053 6150 -1 963 301 253 47 chr1 122242847 122243209 -159950455 + L3 LINE CR1 773 1453 -124 22 70 0 0 chr1 122243917 122243960 -159949704 + AT_rich Low_complexity Low_complexity 1 43 0 194 242 76 30 chr1 122244125 122244191 -159949473 + L2 LINE L2 3197 3265 -7 260 294 7 44 chr1 122245203 122245339 -159948325 + CT-rich Low_complexity Low_complexity 5 135 0 254 390 0 0 chr1 122245905 122245987 -159947677 - L2 LINE L2 -38 3234 3153 258 319 44 77 chr1 122246100 122246282 -159947382 - L2 LINE L2 0 3272 3097 356 297 102 57 chr1 122246371 122246588 -159947076 + MIR SINE MIR 4 225 -37 303 338 62 31 chr1 122246738 122246898 -159946766 - MIR3 SINE MIR -2 206 42 516 338 62 27 chr1 122247420 122247790 -159945874 + L2 LINE L2 2516 2898 -416 295 278 37 46 chr1 122247893 122248001 -159945663 - MIR SINE MIR -64 144 38 26 64 0 0 chr1 122248279 122248326 -159945338 + AT_rich Low_complexity Low_complexity 1 47 0 345 282 59 88 chr1 122248561 122248901 -159944763 - L1MC5 LINE L1 -28 7933 7604 250 271 177 0 chr1 122248962 122249058 -159944606 + LTR16C LTR ERVL 1 113 -378 908 226 53 12 chr1 122249081 122249324 -159944340 + MER97b DNA MER1_type? 5 257 -796 2170 209 12 23 chr1 122249395 122249911 -159943753 - L1ME1 LINE L1 -20 6146 5637 2695 136 109 14 chr1 122249939 122250115 -159943549 - L1MB8 LINE L1 -208 5970 5812 198 71 0 0 chr1 122250115 122250143 -159943521 + (TA)n Simple_repeat Simple_repeat 1 28 0 2695 136 109 14 chr1 122250143 122250388 -159943276 - L1MB8 LINE L1 -366 5812 5592 1868 167 3 16 chr1 122250388 122250700 -159942964 - AluJo SINE Alu -2 310 3 2695 136 109 14 chr1 122250700 122250827 -159942837 - L1MB8 LINE L1 -586 5592 5369 1347 226 6 80 chr1 122250938 122251360 -159942304 - L1MB8 LINE L1 -838 5308 4927 860 107 15 0 chr1 122251360 122251491 -159942173 + L1MA2 LINE L1 6172 6304 0 1347 226 6 80 chr1 122251491 122251568 -159942096 - L1MB8 LINE L1 -1219 4927 4846 5549 206 25 16 chr1 122251625 122252615 -159941049 - L1MB8 LINE L1 -1293 4853 3873 279 0 0 0 chr1 122252615 122252646 -159941018 + (TA)n Simple_repeat Simple_repeat 1 31 0 2194 126 3 0 chr1 122252646 122252948 -159940716 - AluSx SINE Alu -9 303 1 5549 206 25 16 chr1 122252948 122253358 -159940306 - L1MB8 LINE L1 -2272 3874 3450 224 197 0 26 chr1 122253872 122253948 -159939716 + (CCG)n Simple_repeat Simple_repeat 3 76 0 21 36 0 0 chr1 122255997 122256025 -159937639 + GC_rich Low_complexity Low_complexity 1 28 0 3370 192 68 42 chr1 122259208 122260739 -159932925 - L1ME1 LINE L1 -8 6158 4590 1499 238 115 17 chr1 122260739 122261218 -159932446 - L2 LINE L2 -523 2791 2266 201 211 0 0 chr1 122261434 122261486 -159932178 + GA-rich Low_complexity Low_complexity 3 54 0 25 0 0 0 chr1 122261668 122261693 -159931971 + AT_rich Low_complexity Low_complexity 1 25 0 919 265 126 10 chr1 122261897 122262191 -159931473 + LTR16C LTR ERVL 152 479 -12 2442 85 0 0 chr1 122262221 122262526 -159931138 - AluY SINE Alu -6 305 1 396 332 45 7 chr1 122262585 122262931 -159930733 - L1MC5 LINE L1 -414 7394 7168 1076 185 73 90 chr1 122262931 122263278 -159930386 + MLT1D LTR MaLR 1 341 -164 1274 160 70 50 chr1 122263278 122263625 -159930039 + MSTD LTR MaLR 3 396 0 757 172 13 45 chr1 122263626 122263783 -159929881 + MLT1D LTR MaLR 347 498 -7 384 220 91 42 chr1 122263793 122263999 -159929665 - L1MC4 LINE L1 -749 7212 7044 350 268 24 0 chr1 122264137 122264219 -159929445 - MER69 DNA AcHobo -93 84 1 202 294 35 0 chr1 122265219 122265304 -159928360 - MIR SINE MIR -37 225 138 289 288 0 0 chr1 122265354 122265434 -159928230 + L2 LINE L2 3229 3308 -5 221 192 0 67 chr1 122266454 122266547 -159927117 + MIR SINE MIR 115 198 -64 218 312 14 23 chr1 122266852 122266992 -159926672 + CT-rich Low_complexity Low_complexity 3 213 0 480 256 38 19 chr1 122267563 122267723 -159925941 + L2 LINE L2 2891 3053 -219 263 295 115 36 chr1 122268118 122268257 -159925407 + L2 LINE L2 3121 3270 -2 406 343 35 0 chr1 122268912 122269081 -159924583 - MIR3 SINE MIR -1 207 33 1742 114 24 8 chr1 122269140 122269394 -159924270 + AluSx SINE Alu 38 295 -17 954 146 12 36 chr1 122269394 122269559 -159924105 - FAM SINE Alu -15 170 10 331 307 44 29 chr1 122269929 122270066 -159923598 - L2 LINE L2 0 3313 3175 287 214 0 0 chr1 122270307 122270363 -159923301 + MIR SINE MIR 89 144 -118 1469 142 139 64 chr1 122270912 122271193 -159922471 + AluJb SINE Alu 1 302 -10 578 279 63 9 chr1 122271335 122271557 -159922107 - MIR SINE MIR -6 256 23 819 141 15 30 chr1 122271631 122271766 -159921898 - FLAM_C SINE Alu 0 133 1 227 334 89 39 chr1 122272001 122272103 -159921561 + L2 LINE L2 2524 2619 -695 2419 92 3 0 chr1 122272103 122272406 -159921258 + AluSp SINE Alu 1 304 -9 227 334 89 39 chr1 122272406 122272719 -159920945 + L2 LINE L2 2619 2960 -354 25 31 0 0 chr1 122273024 122273056 -159920608 + AT_rich Low_complexity Low_complexity 1 32 0 251 330 48 0 chr1 122273107 122273210 -159920454 + L2 LINE L2 3156 3263 -9 501 279 52 0 chr1 122273345 122273499 -159920165 - MIR SINE MIR -78 184 23 222 364 49 0 chr1 122273609 122273752 -159919912 + L2 LINE L2 2013 2162 -1152 742 248 92 0 chr1 122273928 122274146 -159919518 - MIR SINE MIR -24 238 1 390 321 24 18 chr1 122274342 122274510 -159919154 - MIR SINE MIR -85 177 9 296 157 49 0 chr1 122275132 122275201 -159918463 - MIR SINE MIR -62 146 94 461 242 40 0 chr1 122275919 122276043 -159917621 - MIR SINE MIR 0 262 134 188 261 43 0 chr1 122276380 122276449 -159917215 + MIR SINE MIR 59 130 -132 204 328 128 0 chr1 122277026 122277151 -159916513 - L3 LINE CR1 -355 1222 1082 571 295 83 12 chr1 122277593 122277834 -159915830 - MIR SINE MIR 0 262 5 186 323 32 0 chr1 122277838 122277900 -159915764 + MIR SINE MIR 71 134 -128 198 189 0 0 chr1 122277933 122277970 -159915694 + MIR SINE MIR 220 256 -6 233 297 55 11 chr1 122278881 122278972 -159914692 - MIR SINE MIR -15 247 153 28 29 0 0 chr1 122279262 122279297 -159914367 + AT_rich Low_complexity Low_complexity 1 35 0 306 300 44 0 chr1 122279634 122279724 -159913940 + MIR SINE MIR 102 195 -67 292 203 68 14 chr1 122283029 122283103 -159910561 + MIR SINE MIR 54 131 -131 225 274 48 0 chr1 122283208 122283270 -159910394 - MIR SINE MIR -86 122 58 2530 87 0 0 chr1 122283319 122283628 -159910036 - AluSx SINE Alu -3 309 1 1372 167 0 75 chr1 122283697 122283990 -159909674 + AluJo SINE Alu 32 302 -10 506 276 50 33 chr1 122284413 122284594 -159909070 + MIR SINE MIR 14 197 -65 276 268 152 9 chr1 122285919 122286031 -159907633 + MIR3 SINE MIR 62 189 -19 805 231 124 4 chr1 122286195 122286429 -159907235 + MIR SINE MIR 1 262 0 207 242 30 0 chr1 122286491 122286557 -159907107 + CT-rich Low_complexity Low_complexity 1 68 0 25 0 0 0 chr1 122286913 122286938 -159906726 + AT_rich Low_complexity Low_complexity 1 25 0 437 307 27 5 chr1 122287312 122287509 -159906155 + MIR SINE MIR 28 227 -35 449 206 11 11 chr1 122287533 122287625 -159906039 - AluSg/x SINE Alu -13 297 206 337 185 0 0 chr1 122287729 122287794 -159905870 + MER97b DNA MER1_type? 590 654 -399 1145 132 0 21 chr1 122288732 122288922 -159904742 - AluSq SINE Alu -7 306 121 1837 155 7 14 chr1 122289082 122289379 -159904285 + AluSx SINE Alu 1 295 -17 701 191 78 119 chr1 122289383 122289551 -159904113 + L1MA7 LINE L1 6010 6162 -129 2249 104 7 0 chr1 122289551 122289848 -159903816 + AluSp SINE Alu 9 307 -6 701 191 78 119 chr1 122289848 122289973 -159903691 + L1MA7 LINE L1 6162 6291 0 12106 159 31 18 chr1 122290122 122292576 -159901088 - L1PA13 LINE L1 0 6163 3661 183 42 0 0 chr1 122292576 122292600 -159901064 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 12106 159 31 18 chr1 122292600 122293234 -159900430 - L1PA13 LINE L1 -2502 3661 3037 2037 158 9 3 chr1 122293251 122293580 -159900084 - Tigger1 DNA MER2_type -26 2392 2062 21 36 0 0 chr1 122293982 122294010 -159899654 + AT_rich Low_complexity Low_complexity 1 28 0 2441 97 0 0 chr1 122294198 122294507 -159899157 - AluSx SINE Alu -3 309 1 7927 168 18 9 chr1 122294560 122295315 -159898349 - L1PA13 LINE L1 -3 6160 5413 2228 117 3 0 chr1 122295315 122295615 -159898049 - AluSx SINE Alu -11 301 1 7927 168 18 9 chr1 122295615 122297127 -159896537 - L1PA13 LINE L1 -750 5413 3905 28 48 0 0 chr1 122297338 122297380 -159896284 + AT_rich Low_complexity Low_complexity 1 42 0 1241 263 56 40 chr1 122297410 122298173 -159895491 - L1ME LINE L1 -4515 1565 784 1132 249 50 28 chr1 122298307 122298668 -159894996 - L1MC4a LINE L1 -881 6927 6559 674 219 214 0 chr1 122298714 122298752 -159894912 - L1ME1 LINE L1 -5 6161 6132 2237 94 7 10 chr1 122298752 122299049 -159894615 - AluSc SINE Alu -13 296 1 674 219 214 0 chr1 122299049 122299220 -159894444 - L1ME1 LINE L1 -34 6132 5907 1646 179 11 21 chr1 122299259 122299544 -159894120 - AluJo SINE Alu -30 282 1 2141 168 52 66 chr1 122299544 122300044 -159893620 + LTR54 LTR ERV1 18 510 0 2171 210 55 8 chr1 122300044 122300554 -159893110 - L1ME1 LINE L1 -252 5912 5379 23 0 0 0 chr1 122300582 122300605 -159893059 + AT_rich Low_complexity Low_complexity 1 23 0 240 246 43 0 chr1 122300784 122300853 -159892811 + MIR SINE MIR 81 152 -56 219 191 0 0 chr1 122300959 122301001 -159892663 + MIR SINE MIR 200 241 -21 2152 141 22 3 chr1 122301023 122301393 -159892271 - L1MB3 LINE L1 0 6183 5807 567 235 31 6 chr1 122301393 122301555 -159892109 - L1M4 LINE L1 -3547 2599 2434 2204 97 7 0 chr1 122301586 122301874 -159891790 - AluSx SINE Alu -22 290 1 780 171 0 8 chr1 122301988 122302111 -159891553 + FLAM_A SINE Alu 1 122 -11 234 326 11 11 chr1 122302129 122302224 -159891440 - MIR SINE MIR -92 116 22 653 247 24 18 chr1 122303272 122303442 -159890222 + L1MC/D LINE L1 5582 5752 -2056 2757 259 77 29 chr1 122303445 122304780 -159888884 - L2 LINE L2 0 3313 1927 257 397 0 0 chr1 122305423 122305564 -159888100 - MIR SINE MIR -4 258 118 281 233 0 0 chr1 122305606 122305666 -159887998 - HsTC2 DNA Tc2 -608 1290 1231 345 284 10 10 chr1 122305683 122305785 -159887879 - HsTC2 DNA Tc2 -1796 102 1 456 280 54 18 chr1 122305857 122306025 -159887639 + MIR SINE MIR 25 198 -64 1080 275 77 48 chr1 122306379 122306985 -159886679 - L2 LINE L2 -5 3308 2669 2250 103 0 0 chr1 122306985 122307295 -159886369 - AluSg SINE Alu 0 310 1 1080 275 77 48 chr1 122307295 122307396 -159886268 - L2 LINE L2 -644 2669 2572 180 274 41 41 chr1 122307633 122307706 -159885958 - L2 LINE L2 -594 2720 2648 211 268 252 0 chr1 122307914 122308037 -159885627 - MIR SINE MIR -57 205 52 1248 123 0 17 chr1 122308342 122309528 -159884136 + (TGG)n Simple_repeat Simple_repeat 1 1165 0 419 173 10 77 chr1 122309668 122309772 -159883892 - MSTD LTR MaLR -299 97 1 1355 194 30 13 chr1 122309783 122310082 -159883582 + MER31A LTR ERV1 182 485 0 297 252 214 23 chr1 122310102 122310233 -159883431 + L2 LINE L2 3117 3272 0 21 36 0 0 chr1 122310726 122310754 -159882910 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 122310845 122310877 -159882787 + GC_rich Low_complexity Low_complexity 1 32 0 2189 84 0 17 chr1 122312566 122312865 -159880799 + AluSq SINE Alu 1 294 -19 1810 127 0 38 chr1 122313213 122313530 -159880134 - AluSx SINE Alu 0 306 1 365 309 55 75 chr1 122313928 122314129 -159879535 - L2 LINE L2 0 3313 3117 402 21 0 0 chr1 122314467 122314514 -159879150 + (TA)n Simple_repeat Simple_repeat 1 47 0 479 194 125 56 chr1 122316366 122316510 -159877154 - MIR SINE MIR 0 262 109 2157 120 0 0 chr1 122316569 122316877 -159876787 - AluSx SINE Alu -4 308 1 213 236 14 83 chr1 122317806 122317878 -159875786 - L2 LINE L2 0 3272 3206 956 151 0 13 chr1 122321738 122321897 -159871767 + FRAM SINE Alu 13 169 -7 2128 133 0 0 chr1 122322613 122322915 -159870749 + AluSx SINE Alu 1 302 -10 2283 52 11 0 chr1 122323167 122323453 -159870211 + AluY SINE Alu 3 291 -20 206 221 176 0 chr1 122323493 122323561 -159870103 - L2 LINE L2 -42 3230 3151 647 265 66 14 chr1 122323586 122323797 -159869867 + MIR SINE MIR 4 225 -37 256 239 169 77 chr1 122324453 122324583 -159869081 + MIR3 SINE MIR 46 187 -21 230 326 98 0 chr1 122326033 122326125 -159867539 - L2 LINE L2 -18 3254 3154 191 302 60 43 chr1 122326568 122326684 -159866980 - MIR SINE MIR -111 151 34 637 205 9 0 chr1 122327870 122327982 -159865682 - MER81 DNA DNA 0 114 2 227 357 32 60 chr1 122328577 122328662 -159865002 + L2 LINE L2 2604 2690 -624 1590 159 29 42 chr1 122328662 122328873 -159864791 - AluJb SINE Alu -8 304 97 1904 147 14 0 chr1 122328873 122329166 -159864498 - AluSx SINE Alu -15 297 1 1590 159 29 42 chr1 122329166 122329262 -159864402 - AluJb SINE Alu -215 97 1 227 357 32 60 chr1 122329262 122329361 -159864303 + L2 LINE L2 2690 2783 -531 266 362 40 7 chr1 122332172 122332324 -159861340 - MIR3 SINE MIR -7 201 45 753 295 44 0 chr1 122332630 122332857 -159860807 - MIR SINE MIR -6 256 20 407 247 84 37 chr1 122333308 122333498 -159860166 + MIR SINE MIR 5 203 -59 224 319 85 14 chr1 122333738 122333879 -159859785 - L2 LINE L2 -25 3247 3097 240 309 52 21 chr1 122335053 122335150 -159858514 + L2 LINE L2 3168 3267 -5 184 300 127 0 chr1 122338315 122338425 -159855239 + L2 LINE L2 2632 2755 -559 378 0 0 0 chr1 122339000 122339042 -159854622 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 330 65 28 chr1 122340552 122340767 -159852897 - MIR SINE MIR -21 241 19 26 0 0 0 chr1 122346866 122346892 -159846772 + GC_rich Low_complexity Low_complexity 1 26 0 52 50 0 0 chr1 122347094 122347174 -159846490 + GC_rich Low_complexity Low_complexity 1 80 0 212 179 0 0 chr1 122348958 122348997 -159844667 + MIR SINE MIR 106 144 -118 1091 164 0 5 chr1 122349646 122349835 -159843829 - AluSg/x SINE Alu -7 303 116 338 307 104 0 chr1 122349839 122349993 -159843671 - MIR SINE MIR -62 146 6 281 310 124 0 chr1 122350505 122350618 -159843046 - L2 LINE L2 0 3313 3187 243 103 0 0 chr1 122351137 122351176 -159842488 + (GA)n Simple_repeat Simple_repeat 2 40 0 266 267 76 8 chr1 122351301 122351432 -159842232 + MIR SINE MIR 65 204 -58 2096 104 17 0 chr1 122351660 122351949 -159841715 - AluSx SINE Alu -13 299 6 304 346 46 78 chr1 122352055 122352425 -159841239 - L2 LINE L2 0 3272 2915 459 263 134 54 chr1 122353270 122353402 -159840262 - MIR SINE MIR 0 262 142 2246 208 67 31 chr1 122353402 122353922 -159839742 - MLT1F LTR MaLR -1 541 3 459 263 134 54 chr1 122353922 122354013 -159839651 - MIR SINE MIR -120 142 21 411 305 84 11 chr1 122354429 122354619 -159839045 - MIR SINE MIR -15 247 44 184 220 85 34 chr1 122355357 122355416 -159838248 + MIR SINE MIR 201 262 0 734 147 115 0 chr1 122355502 122355658 -159838006 - MIR SINE MIR -1 261 88 797 73 0 68 chr1 122356445 122356637 -159837027 + (CATTC)n Simple_repeat Simple_repeat 2 180 0 1955 115 7 0 chr1 122356639 122356918 -159836746 - AluSx SINE Alu -31 281 1 201 250 0 0 chr1 122357467 122357527 -159836137 + (TG)n Simple_repeat Simple_repeat 2 61 0 398 196 54 84 chr1 122357929 122357981 -159835683 - MIR3 SINE MIR -5 203 151 1008 172 0 66 chr1 122357981 122358052 -159835612 + MER5A DNA MER1_type 5 79 -110 2107 117 0 3 chr1 122358052 122358351 -159835313 + AluSx SINE Alu 1 298 -14 1008 172 0 66 chr1 122358351 122358477 -159835187 + MER5A DNA MER1_type 79 189 0 398 196 54 84 chr1 122358477 122358568 -159835096 - MIR3 SINE MIR -57 151 63 211 307 13 33 chr1 122362048 122362201 -159831463 + GA-rich Low_complexity Low_complexity 1 150 0 219 316 0 31 chr1 122363250 122363348 -159830316 - L2 LINE L2 -202 3070 2976 471 236 18 9 chr1 122365649 122365759 -159827905 + L2 LINE L2 3160 3270 -2 294 280 54 11 chr1 122365866 122365959 -159827705 - MER81 DNA DNA -16 98 2 276 253 0 0 chr1 122367245 122367320 -159826344 + (TA)n Simple_repeat Simple_repeat 1 75 0 1708 133 8 4 chr1 122367320 122367584 -159826080 - AluJb SINE Alu -27 285 21 729 210 189 31 chr1 122367620 122367713 -159825951 + MER113 DNA MER1_type? 3 80 -441 183 42 0 0 chr1 122367713 122367737 -159825927 + (CA)n Simple_repeat Simple_repeat 1 24 0 729 210 189 31 chr1 122367737 122367934 -159825730 + MER113 DNA MER1_type? 80 339 -182 1694 251 96 22 chr1 122368466 122369161 -159824503 + L2 LINE L2 2261 3005 -308 1017 265 4 4 chr1 122369182 122369427 -159824237 - MIR SINE MIR 0 262 18 468 323 55 10 chr1 122369451 122369652 -159824012 - L1ME3 LINE L1 -1 6161 5952 1423 197 31 10 chr1 122369786 122370075 -159823589 + AluJb SINE Alu 1 295 -17 213 274 0 0 chr1 122370734 122370807 -159822857 + (CA)n Simple_repeat Simple_repeat 1 73 0 195 42 0 0 chr1 122371922 122371946 -159821718 + (TCCCC)n Simple_repeat Simple_repeat 1 24 0 201 346 0 0 chr1 122372246 122372298 -159821366 - L2 LINE L2 -85 3187 3136 350 323 31 43 chr1 122372966 122373127 -159820537 - MIR3 SINE MIR -14 194 36 544 151 58 0 chr1 122373295 122373381 -159820283 + AluJb SINE Alu 190 280 -32 1658 107 0 0 chr1 122373381 122373615 -159820049 + AluSg/x SINE Alu 77 310 0 271 217 48 24 chr1 122374039 122374122 -159819542 + MIR SINE MIR 46 130 -78 267 306 49 49 chr1 122374223 122374367 -159819297 - MIR3 SINE MIR -43 165 22 724 268 34 19 chr1 122375559 122375768 -159817896 + MIR SINE MIR 24 235 -27 207 323 5 15 chr1 122375909 122376054 -159817610 + GA-rich Low_complexity Low_complexity 1 143 0 269 100 20 0 chr1 122376059 122376109 -159817555 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 797 169 0 29 chr1 122377542 122377678 -159815986 + FLAM_C SINE Alu 2 133 0 292 328 69 8 chr1 122378055 122378186 -159815478 - MIR SINE MIR -40 222 84 195 294 118 0 chr1 122378987 122379072 -159814592 + MIR3 SINE MIR 106 200 -8 250 208 0 19 chr1 122381524 122381577 -159812087 + AluJ/FLAM SINE Alu 10 61 -241 1209 152 15 0 chr1 122381585 122381782 -159811882 - AluJo SINE Alu -112 200 1 189 195 0 0 chr1 122382122 122382163 -159811501 + (TG)n Simple_repeat Simple_repeat 2 42 0 248 291 35 23 chr1 122383148 122383234 -159810430 - L2 LINE L2 -17 3255 3169 193 310 50 50 chr1 122384281 122384381 -159809283 - MIR SINE MIR -74 188 89 253 363 89 21 chr1 122385682 122385919 -159807745 - L2 LINE L2 -5 3267 3015 705 198 0 0 chr1 122385920 122386099 -159807565 - FLAM_A SINE Alu 0 194 16 231 307 130 43 chr1 122386235 122386535 -159807129 - L2 LINE L2 -528 2786 2461 2342 91 0 0 chr1 122386675 122386984 -159806680 - AluSg SINE Alu -1 309 1 286 250 56 0 chr1 122387597 122387669 -159805995 + MIR SINE MIR 117 192 -70 1015 263 188 19 chr1 122387682 122387862 -159805802 + LTR16C LTR ERVL 5 153 -338 1997 150 3 0 chr1 122387862 122388169 -159805495 + AluSx SINE Alu 1 308 -4 1015 263 188 19 chr1 122388169 122388403 -159805261 + LTR16C LTR ERVL 153 489 -2 293 310 78 0 chr1 122388456 122388572 -159805092 + L2 LINE L2 3189 3313 0 297 246 17 68 chr1 122390708 122390826 -159802838 + MIR SINE MIR 77 188 -74 188 197 118 79 chr1 122392259 122392286 -159801378 - L2 LINE L2 -5 3267 3243 1891 191 28 17 chr1 122392286 122392492 -159801172 - MLT1A1 LTR MaLR 0 365 152 2063 116 7 0 chr1 122392492 122392785 -159800879 - AluJb SINE Alu -17 295 1 1891 191 28 17 chr1 122392785 122392939 -159800725 - MLT1A1 LTR MaLR -213 152 1 188 197 118 79 chr1 122392939 122392987 -159800677 - L2 LINE L2 -29 3243 3189 1745 142 13 35 chr1 122393571 122393888 -159799776 - AluJo SINE Alu 0 312 3 406 267 70 58 chr1 122394198 122394370 -159799294 + MIR3 SINE MIR 32 205 -3 2023 253 83 14 chr1 122394723 122394755 -159798909 - MLT1E LTR MaLR -1 592 564 1277 181 33 49 chr1 122394755 122394998 -159798666 + MER8 DNA MER2_type 1 239 0 2023 253 83 14 chr1 122394998 122395519 -159798145 - MLT1E LTR MaLR -29 564 1 1431 71 0 0 chr1 122396881 122397361 -159796303 + (CCA)n Simple_repeat Simple_repeat 1 480 0 1227 94 0 0 chr1 122397367 122397500 -159796164 + (CCA)n Simple_repeat Simple_repeat 1 313 0 1227 94 0 0 chr1 122397500 122397680 -159795984 + (CCA)n Simple_repeat Simple_repeat 1 180 0 403 317 39 7 chr1 122399190 122399392 -159794272 + MIR SINE MIR 3 212 -50 198 103 0 0 chr1 122399905 122399934 -159793730 + (GA)n Simple_repeat Simple_repeat 2 30 0 788 264 95 22 chr1 122399935 122400344 -159793320 + L1MC5 LINE L1 7474 7912 -49 565 251 65 40 chr1 122400591 122400790 -159792874 - LTR67 LTR ERVL -1 556 353 519 273 58 6 chr1 122401208 122401386 -159792278 - MIR SINE MIR -50 212 22 193 287 181 21 chr1 122401525 122401619 -159792045 + MIR SINE MIR 1 109 -153 234 158 0 0 chr1 122401638 122401676 -159791988 + MSTB1 LTR MaLR 1 38 -394 2345 139 41 15 chr1 122401676 122402087 -159791577 + MSTB1 LTR MaLR 11 432 0 251 288 68 51 chr1 122402120 122402238 -159791426 + MIR SINE MIR 143 262 0 242 224 45 30 chr1 122403017 122403084 -159790580 + MIR SINE MIR 37 104 -104 580 262 14 7 chr1 122403216 122403361 -159790303 + MLT2F LTR ERVL 1 146 -517 949 177 28 11 chr1 122403365 122403546 -159790118 + MLT1E3 LTR MaLR 51 234 -390 861 248 150 13 chr1 122403384 122403691 -159789973 + MLT2C1 LTR ERVL 49 397 0 * 300 326 63 0 chr1 122403924 122404019 -159789645 - MIR SINE MIR -96 166 66 867 238 185 14 chr1 122404862 122405148 -159788516 + ERVL LTR ERVL 5246 5580 -184 457 292 122 32 chr1 122405166 122405672 -159787992 - L2 LINE L2 -74 3239 2702 2299 109 10 0 chr1 122406339 122406643 -159787021 - AluSx SINE Alu -5 307 1 210 266 78 0 chr1 122407864 122407928 -159785736 - MIR SINE MIR -70 192 124 289 278 56 0 chr1 122408135 122408225 -159785439 + MIR SINE MIR 39 133 -75 2291 112 0 10 chr1 122408766 122409080 -159784584 + AluSx SINE Alu 1 311 -1 985 202 70 9 chr1 122409254 122409467 -159784197 + MIR SINE MIR 3 228 -34 276 289 11 22 chr1 122409535 122409625 -159784039 + L2 LINE L2 2603 2691 -623 284 146 0 0 chr1 122409684 122409732 -159783932 - MER53 DNA DNA -138 51 4 345 238 25 33 chr1 122409917 122410039 -159783625 - MIR3 SINE MIR -11 197 77 442 262 16 25 chr1 122410976 122411098 -159782566 + MIR SINE MIR 23 143 -65 467 301 140 11 chr1 122411179 122411365 -159782299 + MIR SINE MIR 6 215 -47 336 299 34 41 chr1 122411481 122411628 -159782036 - MIR SINE MIR -45 163 18 305 331 8 16 chr1 122411701 122411822 -159781842 + MIR3 SINE MIR 4 123 -85 432 266 96 27 chr1 122412207 122412395 -159781269 - MIR SINE MIR -41 221 21 182 323 72 77 chr1 122413232 122413427 -159780237 + L2 LINE L2 3027 3220 -52 556 269 13 6 chr1 122413808 122413964 -159779700 + MIR3 SINE MIR 52 208 0 322 241 43 52 chr1 122414828 122414944 -159778720 - MIR SINE MIR -37 225 111 1007 270 77 54 chr1 122415378 122416103 -159777561 - L1MC4a LINE L1 -139 6023 5297 452 250 227 0 chr1 122416135 122416311 -159777353 - L2 LINE L2 -3 3310 3095 1607 108 129 3 chr1 122416450 122416737 -159776927 - L1MA5A LINE L1 -6 6291 5969 539 249 91 5 chr1 122416738 122416959 -159776705 - L1MC4a LINE L1 -2935 3211 2972 323 339 101 23 chr1 122416959 122417177 -159776487 - L1M4 LINE L1 -1115 5031 4797 365 115 0 0 chr1 122417194 122417281 -159776383 - AluS SINE Alu 0 317 231 820 347 27 46 chr1 122417286 122417810 -159775854 - L1M4 LINE L1 -1373 4773 4260 2262 111 13 0 chr1 122417813 122418119 -159775545 - AluSx SINE Alu -2 310 1 287 213 16 0 chr1 122418199 122418260 -159775404 + MIR SINE MIR 170 231 -31 244 250 0 60 chr1 122418304 122418404 -159775260 - MIR SINE MIR -55 207 114 1835 165 14 14 chr1 122418442 122418739 -159774925 + AluJb SINE Alu 1 297 -15 184 312 32 43 chr1 122419505 122419598 -159774066 + L2 LINE L2 2719 2810 -504 314 301 15 29 chr1 122419798 122419934 -159773730 - L3 LINE CR1 -553 1024 891 500 255 116 14 chr1 122420676 122420892 -159772772 - MIR SINE MIR -11 251 14 1386 277 90 24 chr1 122421588 122422079 -159771585 - MLT1G1 LTR MaLR 0 595 73 285 273 47 55 chr1 122422513 122422641 -159771023 - L2 LINE L2 -20 3293 3167 289 333 10 0 chr1 122422708 122422804 -159770860 + MIR SINE MIR 77 173 -89 818 331 188 33 chr1 122423739 122425356 -159768308 - L2 LINE L2 -375 2939 1072 272 314 0 25 chr1 122425370 122425491 -159768173 + L2 LINE L2 2309 2426 -888 505 249 70 70 chr1 122425506 122425563 -159768101 - MIR SINE MIR -2 260 204 638 147 121 0 chr1 122425563 122425679 -159767985 - FLAM_C SINE Alu -3 130 1 505 249 70 70 chr1 122425679 122425862 -159767802 - MIR SINE MIR -57 205 20 496 273 16 8 chr1 122426029 122426157 -159767507 + L2 LINE L2 3181 3309 -4 1653 221 117 15 chr1 122426162 122426633 -159767031 + LTR40a LTR ERVL 1 519 0 184 217 50 50 chr1 122427106 122427166 -159766498 + L2 LINE L2 3235 3294 -19 355 246 49 22 chr1 122429787 122429921 -159763743 + MIR SINE MIR 45 181 -62 270 0 0 0 chr1 122430644 122430674 -159762990 + (TG)n Simple_repeat Simple_repeat 1 30 0 654 238 104 25 chr1 122431236 122431476 -159762188 - MIR SINE MIR -1 261 3 450 344 7 0 chr1 122433775 122433926 -159759738 + MIR SINE MIR 107 258 -4 354 333 35 0 chr1 122437140 122437254 -159756410 - MIR3 SINE MIR -18 190 73 566 284 83 5 chr1 122437554 122437758 -159755906 - MIR SINE MIR -12 250 31 216 0 0 0 chr1 122437781 122437805 -159755859 + (A)n Simple_repeat Simple_repeat 1 24 0 468 314 0 43 chr1 122438219 122438407 -159755257 - MIR SINE MIR -18 244 65 869 280 91 59 chr1 122438408 122438955 -159754709 + L2 LINE L2 2742 3313 0 397 293 35 0 chr1 122439114 122439230 -159754434 + MIR3 SINE MIR 82 201 -7 202 206 79 0 chr1 122441088 122441151 -159752513 - MER5A DNA MER1_type -77 112 45 834 262 89 4 chr1 122442164 122442389 -159751275 + MIR SINE MIR 19 262 0 228 278 0 0 chr1 122442387 122442441 -159751223 - MIR SINE MIR -15 247 194 * 567 295 24 48 chr1 122442498 122442708 -159750956 - MIR SINE MIR -56 206 2 209 230 0 81 chr1 122444034 122444108 -159749556 - MIR SINE MIR -38 224 157 404 159 0 0 chr1 122444109 122444178 -159749486 - MER116 DNA Mariner 0 80 12 455 241 105 8 chr1 122444178 122444311 -159749353 - MIR SINE MIR -105 157 12 2616 47 0 0 chr1 122444961 122445259 -159748405 + AluY SINE Alu 1 298 -13 213 121 0 0 chr1 122445605 122445638 -159748026 + (TG)n Simple_repeat Simple_repeat 1 33 0 185 303 74 41 chr1 122445660 122445782 -159747882 + L2 LINE L2 3136 3261 -11 248 326 62 28 chr1 122448945 122449089 -159744575 + MIR SINE MIR 76 224 -38 * 389 240 73 60 chr1 122449074 122449224 -159744440 - MIR3 SINE MIR -27 181 30 598 259 28 13 chr1 122450293 122450469 -159743195 - MIR3 SINE MIR -11 197 20 782 263 32 9 chr1 122450573 122450790 -159742874 - MIR SINE MIR -39 223 2 366 296 80 36 chr1 122451588 122451891 -159741773 - L2 LINE L2 -24 3248 2855 189 0 0 0 chr1 122451892 122451913 -159741751 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 1837 169 34 8 chr1 122453305 122453661 -159740003 - MLT1A1 LTR MaLR 0 365 1 1162 284 50 18 chr1 122453751 122454187 -159739477 - L1ME3A LINE L1 -223 5947 5498 362 73 0 18 chr1 122454268 122454323 -159739341 + (TCCCC)n Simple_repeat Simple_repeat 2 55 0 2348 89 3 0 chr1 122454323 122454615 -159739049 - AluSp SINE Alu -20 293 1 753 175 0 8 chr1 122454729 122454855 -159738809 + FLAM_A SINE Alu 1 125 -8 250 326 11 11 chr1 122454870 122454965 -159738699 - MIR SINE MIR -92 116 22 1260 155 11 32 chr1 122455520 122455797 -159737867 + L1MB8 LINE L1 5857 6127 -51 874 274 120 6 chr1 122455839 122456189 -159737475 - L2 LINE L2 -1729 1585 1196 285 280 0 0 chr1 122456198 122456275 -159737389 + HsTC2 DNA Tc2 3 79 -1819 2144 90 23 7 chr1 122456294 122456595 -159737069 - AluSc SINE Alu -3 306 1 688 234 0 7 chr1 122456620 122456765 -159736899 - MIR SINE MIR -21 241 98 215 125 25 0 chr1 122456968 122457008 -159736656 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 571 303 164 0 chr1 122457281 122457489 -159736175 + MIR SINE MIR 21 262 0 234 156 0 109 chr1 122458214 122458278 -159735386 + L1MC5 LINE L1 7847 7903 -58 236 284 0 0 chr1 122458616 122458683 -159734981 + A-rich Low_complexity Low_complexity 1 67 0 215 146 0 24 chr1 122458859 122458900 -159734764 + (TC)n Simple_repeat Simple_repeat 1 40 0 251 385 7 0 chr1 122459036 122459171 -159734493 - L2 LINE L2 -214 3058 2923 2174 130 19 0 chr1 122459336 122459770 -159733894 - MER57A LTR ERV1 -5 429 1 1596 198 14 46 chr1 122460117 122460466 -159733198 + MER46C DNA MER2_type 1 338 0 780 328 188 26 chr1 122460534 122462301 -159731363 + L2 LINE L2 1241 3310 -3 299 302 9 28 chr1 122463049 122463155 -159730509 + MIR SINE MIR 41 144 -64 348 281 114 52 chr1 122463232 122463442 -159730222 - MIR SINE MIR -17 245 23 428 270 40 0 chr1 122463740 122463840 -159729824 - MER91C DNA MER1_type -11 129 26 445 269 54 15 chr1 122463915 122464045 -159729619 - MIR SINE MIR -49 213 79 201 273 15 30 chr1 122465197 122465263 -159728401 + MIR SINE MIR 198 262 0 499 272 61 50 chr1 122465277 122465457 -159728207 - MIR SINE MIR -67 195 14 649 205 38 76 chr1 122466191 122466376 -159727288 + MER5B DNA MER1_type 1 178 0 238 227 61 30 chr1 122466559 122466625 -159727039 + MER5A DNA MER1_type 122 189 0 257 274 57 40 chr1 122467479 122467603 -159726061 - L2 LINE L2 -2 3270 3145 291 318 196 0 chr1 122468011 122468159 -159725505 - MIR3 SINE MIR -2 206 30 1328 217 79 32 chr1 122468754 122469224 -159724440 - Charlie4a DNA MER1_type -16 492 1 360 329 74 0 chr1 122469869 122470018 -159723646 - MIR SINE MIR -11 251 92 718 124 29 0 chr1 122472034 122472171 -159721493 + (TGGA)n Simple_repeat Simple_repeat 3 143 0 183 156 0 0 chr1 122472177 122472209 -159721455 + GA-rich Low_complexity Low_complexity 1 32 0 181 179 18 18 chr1 122472969 122473025 -159720639 + (TG)n Simple_repeat Simple_repeat 2 57 0 216 290 130 10 chr1 122475438 122475538 -159718126 - L2 LINE L2 -1 3271 3160 396 319 19 57 chr1 122475718 122475875 -159717789 + MIR SINE MIR 2 152 -110 1583 233 84 36 chr1 122475900 122476398 -159717266 - MLT1H1 LTR MaLR 0 555 34 395 345 36 0 chr1 122476675 122476814 -159716850 + MIR SINE MIR 51 194 -68 1268 302 26 33 chr1 122477225 122477768 -159715896 + MLT1H1 LTR MaLR 17 555 0 486 327 39 7 chr1 122477769 122477922 -159715742 - MIR3 SINE MIR -34 174 17 249 330 61 26 chr1 122477980 122478095 -159715569 - L2 LINE L2 -1 3271 3153 377 297 0 0 chr1 122480658 122480749 -159712915 + L2 LINE L2 3223 3313 0 27 49 0 0 chr1 122482423 122482464 -159711200 + GC_rich Low_complexity Low_complexity 1 41 0 220 240 53 0 chr1 122482993 122483068 -159710596 + (CCCCG)n Simple_repeat Simple_repeat 3 81 0 238 240 0 0 chr1 122483921 122483971 -159709693 + (CGG)n Simple_repeat Simple_repeat 1 50 0 243 0 0 0 chr1 122485365 122485392 -159708272 + (A)n Simple_repeat Simple_repeat 1 27 0 228 405 61 0 chr1 122486406 122486537 -159707127 - MIR3 SINE MIR -52 156 18 512 276 124 18 chr1 122486676 122486893 -159706771 - MIR SINE MIR -3 259 20 381 274 141 23 chr1 122487870 122488079 -159705585 - MIR SINE MIR -14 248 19 304 284 23 0 chr1 122490406 122490494 -159703170 - MIR SINE MIR -31 231 142 * 1004 274 112 13 chr1 122490492 122490868 -159702796 + L2 LINE L2 2900 3312 -1 361 318 40 8 chr1 122490835 122490961 -159702703 - MIR SINE MIR -99 163 34 * 342 214 34 86 chr1 122491293 122491410 -159702254 + MIR3 SINE MIR 96 206 -2 537 253 158 20 chr1 122491486 122491688 -159701976 - MIR SINE MIR -14 248 19 199 264 0 19 chr1 122492268 122492321 -159701343 + MIR3 SINE MIR 5 56 -152 264 223 93 101 chr1 122492322 122492461 -159701203 + MIR SINE MIR 83 220 -42 189 0 0 0 chr1 122492663 122492684 -159700980 + (TCCC)n Simple_repeat Simple_repeat 3 23 0 651 332 40 16 chr1 122493403 122493653 -159700011 + MIR SINE MIR 1 256 -6 180 167 0 0 chr1 122493654 122493690 -159699974 + L2 LINE L2 2360 2395 -919 659 257 62 6 chr1 122494519 122494698 -159698966 - MER5A DNA MER1_type 0 189 1 306 233 105 0 chr1 122494718 122494804 -159698860 + MER5A DNA MER1_type 13 107 -82 392 286 121 11 chr1 122496322 122496522 -159697142 + MIR SINE MIR 3 220 -42 218 374 146 10 chr1 122496735 122497029 -159696635 + L3b LINE CR1 1120 1453 -130 189 0 0 0 chr1 122501343 122501364 -159692300 + (TCTG)n Simple_repeat Simple_repeat 3 23 0 330 244 158 32 chr1 122506347 122506488 -159687176 - MIR3 SINE MIR -41 167 23 708 166 129 0 chr1 122506817 122506956 -159686708 + MER45A DNA AcHobo 1 157 -21 248 318 127 0 chr1 122507039 122507149 -159686515 + MIR SINE MIR 46 169 -93 679 286 16 52 chr1 122507973 122508221 -159685443 + MIR SINE MIR 3 241 -21 551 290 55 22 chr1 122508405 122508588 -159685076 - MIR SINE MIR -72 190 2 250 218 205 13 chr1 122508647 122508725 -159684939 - MIR SINE MIR -66 196 104 348 302 163 25 chr1 122508927 122509129 -159684535 + L3 LINE CR1 1160 1389 -188 229 56 0 0 chr1 122509138 122509174 -159684490 - L1MA3 LINE L1 0 6305 6270 1784 141 46 32 chr1 122509221 122509505 -159684159 + AluJo SINE Alu 2 289 -23 466 266 109 47 chr1 122509647 122509839 -159683825 + L3 LINE CR1 1370 1573 -4 230 245 0 0 chr1 122509847 122509896 -159683768 - MIR SINE MIR -120 88 40 333 295 94 58 chr1 122510537 122510692 -159682972 + L2 LINE L2 2106 2273 -1041 192 77 0 0 chr1 122510692 122510718 -159682946 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 333 295 94 58 chr1 122510718 122510786 -159682878 + L2 LINE L2 2273 2337 -977 228 257 43 0 chr1 122510735 122510805 -159682859 - L2 LINE L2 -35 3278 3206 * 440 287 98 7 chr1 122510990 122511133 -159682531 - L2 LINE L2 -5 3308 3153 * 483 289 84 42 chr1 122511132 122511537 -159682127 + L2 LINE L2 2555 2976 -338 199 281 47 16 chr1 122512120 122512184 -159681480 + L2 LINE L2 3206 3271 -1 298 287 26 26 chr1 122512216 122512331 -159681333 + GA-rich Low_complexity Low_complexity 6 120 0 183 100 0 0 chr1 122512933 122512963 -159680701 + (CCA)n Simple_repeat Simple_repeat 1 30 0 359 227 45 11 chr1 122513888 122513976 -159679688 + L2 LINE L2 2979 3069 -203 181 225 50 50 chr1 122514669 122514749 -159678915 + MIR SINE MIR 113 192 -70 405 244 205 19 chr1 122514879 122515035 -159678629 - MIR SINE MIR -1 261 77 427 263 121 40 chr1 122515128 122515326 -159678338 + MIR SINE MIR 38 251 -11 403 284 8 8 chr1 122515802 122515929 -159677735 + GA-rich Low_complexity Low_complexity 2 128 0 1032 149 24 6 chr1 122516414 122516582 -159677082 + FAM SINE Alu 3 173 -2 414 309 31 18 chr1 122516977 122517139 -159676525 + MIR SINE MIR 24 192 -61 185 0 0 39 chr1 122517920 122517946 -159675718 + (TTCTC)n Simple_repeat Simple_repeat 4 28 0 277 347 101 25 chr1 122518621 122518898 -159674766 + L2 LINE L2 2679 2976 -338 2299 173 45 26 chr1 122518962 122519426 -159674238 - L1PB4 LINE L1 0 6156 5681 1635 176 65 0 chr1 122519426 122519704 -159673960 - AluJb SINE Alu -16 296 1 2299 173 45 26 chr1 122519704 122519730 -159673934 - L1PB4 LINE L1 -475 5681 5657 2393 98 13 0 chr1 122519739 122520045 -159673619 - AluSg SINE Alu 0 310 1 288 116 0 0 chr1 122520355 122520398 -159673266 + Charlie5 DNA MER1_type 25 67 -2545 644 154 84 0 chr1 122520400 122520543 -159673121 + Charlie5 DNA MER1_type 2431 2585 -27 227 140 35 53 chr1 122520563 122520620 -159673044 + LTR37B LTR ERV1 134 189 -279 255 31 0 0 chr1 122520625 122520657 -159673007 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 929 181 108 16 chr1 122520677 122520926 -159672738 + LTR37B LTR ERV1 197 468 0 281 200 0 67 chr1 122521604 122521664 -159672000 + L2 LINE L2 3201 3256 -16 1355 130 89 4 chr1 122521930 122522177 -159671487 - L1MB3 LINE L1 -7 6176 5909 2724 105 3 0 chr1 122523419 122523782 -159669882 + THE1B LTR MaLR 1 364 0 402 281 54 54 chr1 122523905 122524108 -159669556 - MIR SINE MIR -45 217 15 572 262 151 15 chr1 122524839 122525045 -159668619 - MIR SINE MIR -1 261 28 243 267 17 117 chr1 122525028 122525148 -159668516 - MIR SINE MIR -76 186 79 * 258 198 12 86 chr1 122525775 122525856 -159667808 - MIR3 SINE MIR -125 83 9 222 62 0 0 chr1 122527089 122527121 -159666543 + (CATTC)n Simple_repeat Simple_repeat 5 36 0 487 275 0 33 chr1 122527280 122527400 -159666264 + L2 LINE L2 3157 3272 0 181 231 0 0 chr1 122528376 122528415 -159665249 - L2 LINE L2 -2 3270 3232 211 266 106 21 chr1 122528425 122528519 -159665145 - MIR SINE MIR -128 134 33 283 312 130 13 chr1 122528523 122528677 -159664987 - MIR3 SINE MIR -6 202 31 2598 52 0 19 chr1 122529628 122529937 -159663727 + AluY SINE Alu 1 303 -8 593 312 80 45 chr1 122529937 122530338 -159663326 - MLT1J LTR MaLR -96 415 1 2392 99 0 0 chr1 122530426 122530730 -159662934 - AluSc SINE Alu -5 304 1 309 279 0 13 chr1 122530731 122530810 -159662854 + L1ME4a LINE L1 6043 6120 -1 442 299 73 23 chr1 122531799 122532060 -159661604 + MLT1J LTR MaLR 237 510 -1 2779 236 68 19 chr1 122532649 122532879 -159660785 + Charlie7 DNA MER1_type 371 588 -2024 2165 81 0 0 chr1 122532879 122533152 -159660512 + AluY SINE Alu 37 309 -2 2779 236 68 19 chr1 122533152 122534109 -159659555 + Charlie7 DNA MER1_type 588 1646 -966 580 229 71 24 chr1 122534149 122534359 -159659305 + Charlie7 DNA MER1_type 1801 2020 -592 275 191 235 0 chr1 122534485 122534553 -159659111 - AluJ/FLAM SINE Alu -218 84 1 186 366 12 12 chr1 122534765 122534847 -159658817 - L3 LINE CR1 -234 1343 1262 4059 145 73 11 chr1 122536231 122536960 -159656704 - LTR39 LTR ERV1 -8 775 2 2261 116 3 3 chr1 122536994 122537295 -159656369 + AluSx SINE Alu 1 301 -11 659 12 0 12 chr1 122537537 122537618 -159656046 + (TAAAA)n Simple_repeat Simple_repeat 3 82 0 896 240 97 0 chr1 122538662 122538879 -159654785 - MIR SINE MIR -10 252 15 788 190 85 190 chr1 122539899 122540520 -159653144 + LTR8A LTR ERV1 1 685 -42 2510 68 3 0 chr1 122540520 122540830 -159652834 + AluY SINE Alu 1 311 0 788 190 85 190 chr1 122540830 122540920 -159652744 + LTR8A LTR ERV1 685 620 -107 2495 28 41 3 chr1 122540920 122541210 -159652454 - AluY SINE Alu -10 301 1 788 190 85 190 chr1 122541210 122541309 -159652355 + LTR8A LTR ERV1 619 727 0 2209 186 102 91 chr1 122541380 122542058 -159651606 - L1ME1 LINE L1 -5 6161 5477 626 282 12 6 chr1 122543459 122543622 -159650042 - MIR3 SINE MIR -8 200 37 227 200 0 55 chr1 122544884 122544939 -159648725 + GA-rich Low_complexity Low_complexity 2 53 0 6131 144 15 24 chr1 122546168 122547892 -159645772 + L1PB4 LINE L1 4124 5828 -328 2144 105 11 0 chr1 122547892 122548178 -159645486 + AluY SINE Alu 22 310 -1 6131 144 15 24 chr1 122548178 122548505 -159645159 + L1PB4 LINE L1 5828 6156 0 1802 170 17 0 chr1 122550064 122550352 -159643312 + AluJo SINE Alu 1 293 -19 240 143 0 0 chr1 122550352 122550394 -159643270 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 361 216 63 48 chr1 122550433 122550509 -159643155 + MIR3 SINE MIR 72 154 -54 765 221 69 60 chr1 122550509 122550726 -159642938 + MER20 DNA MER1_type 1 219 0 361 216 63 48 chr1 122550726 122550754 -159642910 + MIR3 SINE MIR 154 180 -28 419 244 122 0 chr1 122551332 122551463 -159642201 - MER117 DNA MER1_type -21 176 30 374 277 152 0 chr1 122551551 122551663 -159642001 + L2 LINE L2 3184 3312 -1 2101 90 62 7 chr1 122551987 122552275 -159641389 - AluSg SINE Alu -6 304 1 425 296 172 5 chr1 122552287 122552490 -159641174 - MIR SINE MIR -8 254 18 784 145 99 0 chr1 122552825 122552997 -159640667 + MER53 DNA DNA 1 189 0 189 0 0 0 chr1 122553253 122553274 -159640390 + (TGG)n Simple_repeat Simple_repeat 3 23 0 321 26 0 0 chr1 122553750 122553788 -159639876 + (CA)n Simple_repeat Simple_repeat 2 39 0 310 303 114 0 chr1 122553795 122553927 -159639737 + MIR3 SINE MIR 28 174 -34 180 312 13 39 chr1 122553955 122554032 -159639632 + L2 LINE L2 3145 3219 -53 2172 150 117 29 chr1 122555104 122555524 -159638140 - MSTB2 LTR MaLR 0 457 1 377 295 101 0 chr1 122556135 122556264 -159637400 + MIR SINE MIR 70 211 -51 257 268 0 0 chr1 122556375 122556431 -159637233 - L2 LINE L2 0 3313 3258 551 308 118 5 chr1 122556501 122556722 -159636942 - MIR SINE MIR -2 260 15 363 212 257 9 chr1 122557731 122557844 -159635820 + MER5A DNA MER1_type 42 182 -7 225 77 0 0 chr1 122557923 122557962 -159635702 - Alu SINE Alu 0 301 263 257 268 0 0 chr1 122557983 122558039 -159635625 + L2 LINE L2 3258 3313 0 1987 100 0 0 chr1 122558229 122558479 -159635185 - AluSc SINE Alu -59 250 1 1360 234 73 5 chr1 122558479 122558889 -159634775 + Charlie4a DNA MER1_type 71 508 0 2301 93 10 16 chr1 122559392 122559704 -159633960 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr1 122559730 122559756 -159633908 + AT_rich Low_complexity Low_complexity 1 26 0 286 241 19 74 chr1 122560278 122560386 -159633278 + MIR SINE MIR 89 190 -72 2290 184 64 2 chr1 122560460 122560900 -159632764 - MLT1C LTR MaLR 0 467 1 378 328 100 42 chr1 122561137 122561448 -159632216 - L2 LINE L2 -126 3146 2818 225 65 0 0 chr1 122561614 122561645 -159632019 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 186 261 31 15 chr1 122561692 122561757 -159631907 - L2 LINE L2 -665 2649 2584 2064 118 3 54 chr1 122561856 122562171 -159631493 - AluJb SINE Alu -13 299 1 1723 194 102 12 chr1 122562423 122562846 -159630818 + MLT1C LTR MaLR 7 467 0 214 286 105 38 chr1 122564849 122564954 -159628710 + MIR SINE MIR 16 127 -81 2612 61 0 0 chr1 122566919 122567229 -159626435 - AluY SINE Alu -1 310 1 23 33 0 0 chr1 122567542 122567572 -159626092 + AT_rich Low_complexity Low_complexity 1 30 0 804 85 76 0 chr1 122567909 122568027 -159625637 - AluY SINE Alu -10 301 175 967 268 123 22 chr1 122569503 122569958 -159623706 - LTR33 LTR ERVL -7 514 14 506 229 81 2 chr1 122569999 122570163 -159623501 + MIR SINE MIR 16 192 -70 458 275 96 70 chr1 122570267 122570496 -159623168 + MIR SINE MIR 3 237 -25 669 278 94 0 chr1 122570500 122570712 -159622952 + MIR SINE MIR 31 262 0 484 328 48 26 chr1 122571126 122571355 -159622309 - MIR SINE MIR -6 256 23 203 164 55 73 chr1 122571507 122571562 -159622102 + MIR3 SINE MIR 144 197 -11 2323 90 3 0 chr1 122572211 122572557 -159621107 + AluSp SINE Alu 2 348 0 831 189 195 0 chr1 122572652 122572842 -159620822 - MIR SINE MIR -21 241 15 367 329 21 21 chr1 122573027 122573170 -159620494 - MIR SINE MIR -11 251 109 24 0 0 0 chr1 122573362 122573386 -159620278 + AT_rich Low_complexity Low_complexity 1 24 0 435 320 60 56 chr1 122573405 122573655 -159620009 + MIR SINE MIR 12 262 0 215 307 0 27 chr1 122573790 122573865 -159619799 - MIR SINE MIR -119 89 17 188 268 107 0 chr1 122573853 122573909 -159619755 + MIR SINE MIR 105 166 -96 * 269 86 0 0 chr1 122574467 122574502 -159619162 - U2 snRNA snRNA -153 35 1 227 264 0 0 chr1 122575556 122575609 -159618055 - L2 LINE L2 -5 3308 3256 2140 156 0 9 chr1 122576355 122576670 -159616994 + AluJo SINE Alu 1 312 0 1257 167 0 0 chr1 122577968 122578172 -159615492 - MER3 DNA MER1_type 0 209 6 893 247 104 19 chr1 122578855 122579163 -159614501 + MLT1J1 LTR MaLR 1 334 -112 655 245 72 35 chr1 122580427 122580662 -159613002 - MIR SINE MIR -3 259 20 228 331 24 47 chr1 122580676 122580803 -159612861 - L2 LINE L2 -10 3303 3180 453 293 52 35 chr1 122581067 122581241 -159612423 + MIR SINE MIR 86 262 0 435 251 40 78 chr1 122581327 122581539 -159612125 - MIR SINE MIR -54 208 9 286 291 39 87 chr1 122581860 122582066 -159611598 + MIR SINE MIR 7 202 -60 379 301 68 12 chr1 122582818 122582981 -159610683 - MIR3 SINE MIR -7 201 30 628 259 7 0 chr1 122583153 122583288 -159610376 - MIR SINE MIR -93 169 34 204 217 150 0 chr1 122583863 122583923 -159609741 + L3 LINE CR1 1379 1447 -130 265 299 128 8 chr1 122584301 122584418 -159609246 - MIR SINE MIR -119 143 13 782 286 69 3 chr1 122585302 122585606 -159608058 - L3 LINE CR1 -39 1538 1215 247 86 0 0 chr1 122585730 122585765 -159607899 - U2 snRNA snRNA -152 36 2 249 366 30 11 chr1 122585900 122586052 -159607612 - MIR3 SINE MIR -66 142 4 390 215 33 66 chr1 122586094 122586215 -159607449 - MIR SINE MIR -10 252 136 661 217 30 30 chr1 122586462 122586628 -159607036 + MIR SINE MIR 56 221 -41 212 304 0 0 chr1 122586831 122586887 -159606777 - L3 LINE CR1 -1 1576 1521 655 306 58 16 chr1 122587167 122587409 -159606255 - MIR SINE MIR 0 262 11 1950 79 8 16 chr1 122587424 122587677 -159605987 + AluSx SINE Alu 55 305 -7 351 330 44 44 chr1 122587852 122588055 -159605609 - L2 LINE L2 -26 3287 3085 1697 134 0 8 chr1 122588149 122588388 -159605276 + AluJo SINE Alu 1 237 -75 3396 123 24 142 chr1 122638638 122639418 -159554246 - LTR8 LTR ERV1 -3 688 1 2256 65 0 14 chr1 122640062 122640391 -159553273 + AluY SINE Alu 1 311 0 675 267 43 30 chr1 122640482 122640714 -159552950 - L2 LINE L2 0 3313 3079 2750 142 40 7 chr1 122640725 122641218 -159552446 + MER44D DNA MER2_type 1 605 0 215 227 409 11 chr1 122641220 122641308 -159552356 - L2 LINE L2 -244 3069 2947 333 298 79 9 chr1 122641987 122642101 -159551563 - L1M4 LINE L1 -1029 5117 4996 812 194 11 80 chr1 122642102 122642212 -159551452 + FAM SINE Alu 1 96 -215 1607 163 6 31 chr1 122642212 122642531 -159551133 + AluJo SINE Alu 1 311 -1 812 194 11 80 chr1 122642531 122642595 -159551069 + FAM SINE Alu 96 163 -12 2276 75 10 0 chr1 122642608 122642903 -159550761 + AluSx SINE Alu 7 304 -8 2364 75 7 0 chr1 122642903 122643210 -159550454 + AluSq SINE Alu 1 309 -4 2177 77 21 0 chr1 122643212 122643498 -159550166 + AluSg SINE Alu 3 294 -16 532 266 8 8 chr1 122644078 122644202 -159549462 - MIR3 SINE MIR -48 160 37 227 200 0 55 chr1 122645464 122645519 -159548145 + GA-rich Low_complexity Low_complexity 2 53 0 6417 144 15 26 chr1 122646748 122648472 -159545192 + L1PB4 LINE L1 4124 5822 -334 2007 100 11 0 chr1 122648472 122648753 -159544911 + AluY SINE Alu 22 305 -6 6417 144 15 26 chr1 122648753 122649085 -159544579 + L1PB4 LINE L1 5822 6156 0 1656 170 17 0 chr1 122650644 122650932 -159542732 + AluJo SINE Alu 1 293 -19 240 143 0 0 chr1 122650932 122650974 -159542690 + (GGGA)n Simple_repeat Simple_repeat 1 42 0 361 215 65 48 chr1 122651013 122651089 -159542575 + MIR3 SINE MIR 72 154 -54 739 203 74 65 chr1 122651089 122651306 -159542358 + MER20 DNA MER1_type 1 219 0 361 215 65 48 chr1 122651306 122651334 -159542330 + MIR3 SINE MIR 154 180 -28 444 236 108 6 chr1 122651912 122652069 -159541595 - MER117 DNA MER1_type -21 176 4 373 277 152 0 chr1 122652131 122652243 -159541421 + L2 LINE L2 3184 3312 -1 1960 90 62 7 chr1 122652567 122652855 -159540809 - AluSg SINE Alu -6 304 1 418 296 172 5 chr1 122652867 122653070 -159540594 - MIR SINE MIR -8 254 18 790 136 101 0 chr1 122653405 122653574 -159540090 + MER53 DNA DNA 1 186 -3 189 0 0 0 chr1 122653833 122653854 -159539810 + (TGG)n Simple_repeat Simple_repeat 3 23 0 321 26 0 0 chr1 122654330 122654368 -159539296 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 303 114 0 chr1 122654375 122654507 -159539157 + MIR3 SINE MIR 28 174 -34 2175 148 117 29 chr1 122655684 122656104 -159537560 - MSTB2 LTR MaLR 0 457 1 376 295 101 0 chr1 122656715 122656844 -159536820 + MIR SINE MIR 70 211 -51 262 268 0 0 chr1 122656955 122657011 -159536653 - L2 LINE L2 0 3313 3258 552 308 118 5 chr1 122657081 122657302 -159536362 - MIR SINE MIR -2 260 15 362 212 257 9 chr1 122658311 122658424 -159535240 + MER5A DNA MER1_type 42 182 -7 235 77 0 0 chr1 122658503 122658542 -159535122 - Alu SINE Alu 0 299 261 262 268 0 0 chr1 122658563 122658619 -159535045 + L2 LINE L2 3258 3313 0 1867 100 0 0 chr1 122658809 122659059 -159534605 - AluSc SINE Alu -59 250 1 1437 234 73 5 chr1 122659059 122659469 -159534195 + Charlie4a DNA MER1_type 71 508 0 2151 93 10 16 chr1 122659972 122660284 -159533380 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr1 122660310 122660336 -159533328 + AT_rich Low_complexity Low_complexity 1 26 0 282 241 19 74 chr1 122660858 122660966 -159532698 + MIR SINE MIR 89 190 -72 2251 184 64 2 chr1 122661040 122661480 -159532184 - MLT1C LTR MaLR 0 467 1 368 328 100 42 chr1 122661717 122662028 -159531636 - L2 LINE L2 -126 3146 2818 225 65 0 0 chr1 122662194 122662225 -159531439 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 182 261 31 15 chr1 122662272 122662337 -159531327 - L2 LINE L2 -665 2649 2584 1902 118 3 54 chr1 122662436 122662749 -159530915 - AluJb SINE Alu -15 297 1 1855 191 102 12 chr1 122663001 122663424 -159530240 + MLT1C LTR MaLR 7 467 0 213 286 105 38 chr1 122665426 122665531 -159528133 + MIR SINE MIR 16 127 -81 2466 61 0 0 chr1 122667496 122667806 -159525858 - AluY SINE Alu -1 310 1 23 33 0 0 chr1 122668119 122668149 -159525515 + AT_rich Low_complexity Low_complexity 1 30 0 780 70 96 0 chr1 122668489 122668604 -159525060 - AluY SINE Alu -11 300 175 1120 266 123 22 chr1 122670084 122670539 -159523125 - LTR33 LTR ERVL -7 514 14 503 229 81 2 chr1 122670580 122670744 -159522920 + MIR SINE MIR 16 192 -70 455 275 96 70 chr1 122670848 122671077 -159522587 + MIR SINE MIR 3 237 -25 673 278 94 0 chr1 122671081 122671293 -159522371 + MIR SINE MIR 31 262 0 494 266 92 70 chr1 122671707 122671936 -159521728 - MIR SINE MIR -6 256 23 203 164 55 73 chr1 122672088 122672143 -159521521 + MIR3 SINE MIR 144 197 -11 2180 90 3 0 chr1 122672792 122673138 -159520526 + AluSp SINE Alu 2 348 0 829 189 195 0 chr1 122673233 122673423 -159520241 - MIR SINE MIR -21 241 15 364 329 21 21 chr1 122673608 122673751 -159519913 - MIR SINE MIR -11 251 109 24 0 0 0 chr1 122673943 122673967 -159519697 + AT_rich Low_complexity Low_complexity 1 24 0 444 320 60 56 chr1 122673986 122674236 -159519428 + MIR SINE MIR 12 262 0 211 307 0 27 chr1 122674371 122674446 -159519218 - MIR SINE MIR -119 89 17 185 208 125 0 chr1 122674434 122674482 -159519182 + MIR SINE MIR 105 158 -104 * 297 103 0 0 chr1 122675043 122675082 -159518582 - U2 snRNA snRNA -149 39 1 228 264 0 0 chr1 122676136 122676189 -159517475 - L2 LINE L2 -5 3308 3256 1987 153 0 10 chr1 122676935 122677249 -159516415 + AluJo SINE Alu 1 311 -1 1312 167 0 0 chr1 122678552 122678756 -159514908 - MER3 DNA MER1_type 0 209 6 975 247 104 19 chr1 122679439 122679747 -159513917 + MLT1J1 LTR MaLR 1 334 -112 652 237 99 35 chr1 122681011 122681260 -159512404 - MIR SINE MIR -3 259 1 229 331 24 47 chr1 122681260 122681387 -159512277 - L2 LINE L2 -10 3303 3180 447 299 52 35 chr1 122681651 122681825 -159511839 + MIR SINE MIR 86 262 0 426 251 40 78 chr1 122681911 122682123 -159511541 - MIR SINE MIR -54 208 9 284 291 39 87 chr1 122682444 122682650 -159511014 + MIR SINE MIR 7 202 -60 189 290 16 0 chr1 122682938 122683000 -159510664 + L2 LINE L2 3206 3268 -4 365 301 68 12 chr1 122683482 122683645 -159510019 - MIR3 SINE MIR -7 201 30 626 259 7 0 chr1 122683817 122683952 -159509712 - MIR SINE MIR -93 169 34 203 217 150 0 chr1 122684527 122684587 -159509077 + L3 LINE CR1 1379 1447 -130 263 299 128 8 chr1 122684965 122685082 -159508582 - MIR SINE MIR -119 143 13 767 286 69 3 chr1 122685966 122686270 -159507394 - L3 LINE CR1 -39 1538 1215 242 114 0 0 chr1 122686394 122686429 -159507235 - U2 snRNA snRNA -152 36 2 249 366 30 11 chr1 122686564 122686716 -159506948 - MIR3 SINE MIR -66 142 4 403 215 33 66 chr1 122686758 122686879 -159506785 - MIR SINE MIR -10 252 136 657 217 30 30 chr1 122687126 122687292 -159506372 + MIR SINE MIR 56 221 -41 210 304 0 0 chr1 122687495 122687551 -159506113 - L3 LINE CR1 -1 1576 1521 642 306 58 16 chr1 122687831 122688073 -159505591 - MIR SINE MIR 0 262 11 1821 85 8 16 chr1 122688088 122688346 -159505318 + AluSx SINE Alu 55 310 -2 347 330 44 44 chr1 122688521 122688724 -159504940 - L2 LINE L2 -26 3287 3085 1875 131 3 14 chr1 122688818 122689108 -159504556 + AluJo SINE Alu 1 287 -25 503 291 132 3 chr1 122689401 122689605 -159504059 + MIR SINE MIR 39 261 -1 201 312 55 55 chr1 122690804 122690913 -159502751 - L2 LINE L2 -14 3258 3150 1705 263 13 0 chr1 122691009 122691404 -159502260 + LTR16A LTR ERVL 42 441 -9 1291 165 0 0 chr1 122691556 122691774 -159501890 + AluJb SINE Alu 86 303 -9 270 0 0 0 chr1 122691811 122691841 -159501823 + (TAA)n Simple_repeat Simple_repeat 2 31 0 185 333 0 0 chr1 122691872 122691935 -159501729 - L2 LINE L2 -973 2341 2279 999 246 121 29 chr1 122691960 122692462 -159501202 + MLT1H1 LTR MaLR 8 543 -12 246 232 90 102 chr1 122692561 122692738 -159500926 + L2 LINE L2 2639 2813 -501 1545 202 113 74 chr1 122692764 122692876 -159500788 + MLT2B1 LTR ERVL 1 107 -413 1815 147 0 13 chr1 122692876 122693175 -159500489 + AluSx SINE Alu 2 296 -16 1545 202 113 74 chr1 122693175 122693408 -159500256 + MLT2B1 LTR ERVL 107 371 -149 2263 89 0 3 chr1 122693408 122693710 -159499954 + AluSp SINE Alu 1 301 -12 1545 202 113 74 chr1 122693710 122693824 -159499840 + MLT2B1 LTR ERVL 371 479 -41 2015 156 18 9 chr1 122693833 122694172 -159499492 + MER7A DNA MER2_type 2 341 -5 234 196 18 0 chr1 122694208 122694264 -159499400 + A-rich Low_complexity Low_complexity 3 59 0 22 70 0 0 chr1 122694520 122694563 -159499101 + AT_rich Low_complexity Low_complexity 1 43 0 254 313 0 0 chr1 122694795 122694859 -159498805 - L2 LINE L2 0 3313 3250 417 235 55 27 chr1 122694961 122695161 -159498503 + L2 LINE L2 3138 3313 0 2005 145 0 19 chr1 122695783 122696101 -159497563 - AluSx SINE Alu 0 312 1 504 261 162 72 chr1 122696425 122697057 -159496607 - L2 LINE L2 0 3313 2542 252 229 62 83 chr1 122697396 122697492 -159496172 - L3 LINE CR1 -12 1565 1472 194 200 0 0 chr1 122697666 122697701 -159495963 - MIR SINE MIR -146 116 82 26 0 0 0 chr1 122697935 122697961 -159495703 + AT_rich Low_complexity Low_complexity 1 26 0 1907 148 0 0 chr1 122698117 122698414 -159495250 - AluSx SINE Alu -15 297 1 1953 136 7 0 chr1 122698494 122698795 -159494869 - AluSx SINE Alu -9 303 1 402 127 0 0 chr1 122699004 122699059 -159494605 + Alu SINE Alu 1 55 -244 604 255 7 7 chr1 122699753 122699906 -159493758 + MIR SINE MIR 110 262 0 2308 77 0 10 chr1 122700224 122700535 -159493129 + AluY SINE Alu 1 308 -3 2176 95 0 7 chr1 122700535 122700839 -159492825 + AluSq SINE Alu 1 303 -10 199 316 32 32 chr1 122700884 122700979 -159492685 + MIR SINE MIR 112 206 -56 1177 246 90 30 chr1 122701066 122701399 -159492265 + MLT1J LTR MaLR 1 353 -158 2084 106 2 15 chr1 122701469 122702014 -159491650 - MER4A LTR ERV1 0 664 1 630 234 80 38 chr1 122702014 122702161 -159491503 - L1MC4 LINE L1 -192 7850 7688 1550 125 157 3 chr1 122702161 122702300 -159491364 + MER46B DNA MER2_type 1 117 -2614 2240 85 3 0 chr1 122702300 122702594 -159491070 - AluSx SINE Alu -17 295 1 1550 125 157 3 chr1 122702594 122702767 -159490897 + MER46B DNA MER2_type 117 236 0 630 234 80 38 chr1 122702767 122702858 -159490806 - L1MC4 LINE L1 -354 7688 7602 1630 130 68 24 chr1 122703011 122703134 -159490530 + AluSq SINE Alu 1 117 -196 1346 217 86 51 chr1 122703134 122703441 -159490223 - LTR2 LTR ERV1 -1 448 120 2351 63 3 7 chr1 122703441 122703740 -159489924 - AluY SINE Alu -13 298 1 1346 217 86 51 chr1 122703740 122703865 -159489799 - LTR2 LTR ERV1 -329 120 1 1630 130 68 24 chr1 122703865 122704033 -159489631 + AluSq SINE Alu 117 305 -8 360 376 31 25 chr1 122704039 122704201 -159489463 + L1ME3A LINE L1 4083 4245 -1901 835 128 0 6 chr1 122704205 122704455 -159489209 + AluJb SINE Alu 1 297 -15 347 285 163 6 chr1 122704468 122704640 -159489024 + L1ME3A LINE L1 4326 4524 -1622 831 118 15 15 chr1 122704689 122704825 -159488839 - BC200 scRNA scRNA -53 147 12 788 268 84 23 chr1 122704903 122705396 -159488268 + L1ME3A LINE L1 5086 5609 -555 815 120 0 32 chr1 122705404 122705529 -159488135 - FLAM_A SINE Alu -2 140 20 718 239 22 102 chr1 122705542 122705656 -159488008 + L1ME3A LINE L1 5613 5734 -436 2327 152 67 5 chr1 122705656 122706057 -159487607 - MSTB LTR MaLR 0 426 1 718 239 22 102 chr1 122706057 122706306 -159487358 + L1ME3A LINE L1 5734 5947 -223 702 198 256 10 chr1 122706671 122706878 -159486786 - MIR SINE MIR 0 262 5 523 167 0 10 chr1 122706977 122707073 -159486591 + L1MB7 LINE L1 6081 6175 -9 939 151 0 42 chr1 122707540 122707706 -159485958 + AluSg/x SINE Alu 122 280 -32 279 0 0 0 chr1 122707706 122707737 -159485927 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1887 131 6 26 chr1 122707825 122708137 -159485527 - AluSx SINE Alu -6 306 1 1734 189 0 3 chr1 122708371 122708684 -159484980 + AluJo SINE Alu 1 312 0 1510 151 14 1 chr1 122708741 122709027 -159484637 + MER1B DNA MER1_type 1 329 0 312 27 0 0 chr1 122709171 122709208 -159484456 + (CA)n Simple_repeat Simple_repeat 2 38 0 739 165 0 8 chr1 122709745 122709866 -159483798 + L1MC5 LINE L1 6682 6801 -1160 423 189 88 34 chr1 122709867 122710015 -159483649 + L1MC5 LINE L1 7772 7927 -34 26 64 0 0 chr1 122711357 122711404 -159482260 + GC_rich Low_complexity Low_complexity 1 47 0 210 176 0 0 chr1 122717243 122717294 -159476370 + T-rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 122719111 122719133 -159474531 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr1 122720922 122720965 -159472699 + AT_rich Low_complexity Low_complexity 1 43 0 1844 132 4 4 chr1 122722769 122723035 -159470629 - AluSx SINE Alu -46 266 1 253 306 0 12 chr1 122723361 122723446 -159470218 - MIR SINE MIR -12 250 167 253 335 53 48 chr1 122723569 122723757 -159469907 - MER5A DNA MER1_type 0 189 1 184 283 100 58 chr1 122724039 122724159 -159469505 - MIR SINE MIR -73 189 65 327 317 25 42 chr1 122724424 122724544 -159469120 - L2 LINE L2 -14 3299 3182 309 207 18 72 chr1 122724564 122724675 -159468989 - L2 LINE L2 -507 2807 2703 2204 101 20 0 chr1 122725751 122726048 -159467616 - AluSx SINE Alu -9 303 1 2002 130 11 7 chr1 122726610 122726895 -159466769 + AluJb SINE Alu 1 286 -26 200 167 0 0 chr1 122726895 122726925 -159466739 + (TG)n Simple_repeat Simple_repeat 1 30 0 1941 141 7 13 chr1 122728157 122728456 -159465208 - AluJb SINE Alu -15 297 1 21 36 0 0 chr1 122728545 122728573 -159465091 + AT_rich Low_complexity Low_complexity 1 28 0 978 237 56 4 chr1 122729727 122729976 -159463688 + MIR SINE MIR 1 262 0 2369 94 0 0 chr1 122730102 122730410 -159463254 + AluY SINE Alu 1 308 -3 2068 108 17 7 chr1 122732054 122732341 -159461323 + AluJb SINE Alu 1 290 -22 759 175 17 0 chr1 122733100 122733220 -159460444 + FLAM_C SINE Alu 2 123 -20 239 0 32 0 chr1 122733223 122733254 -159460410 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2135 105 0 20 chr1 122733890 122734185 -159459479 + AluSx SINE Alu 1 289 -23 1940 143 13 7 chr1 122734254 122734554 -159459110 + AluJo SINE Alu 1 302 -10 333 93 0 0 chr1 122738638 122738681 -159454983 - Alu SINE Alu -16 284 242 261 145 101 43 chr1 122738789 122738858 -159454806 - AluJ/FLAM SINE Alu -228 74 2 1742 139 7 14 chr1 122739072 122739352 -159454312 + AluJo SINE Alu 5 282 -30 288 300 71 59 chr1 122739844 122740014 -159453650 - MIR SINE MIR -42 220 49 1628 156 20 37 chr1 122740336 122740631 -159453033 - AluJb SINE Alu -22 290 1 2220 109 0 10 chr1 122740926 122741237 -159452427 + AluSx SINE Alu 1 308 -4 26 0 0 0 chr1 122741647 122741673 -159451991 + AT_rich Low_complexity Low_complexity 1 26 0 1943 138 32 0 chr1 122743491 122743773 -159449891 + AluSg SINE Alu 14 304 -6 1795 181 13 3 chr1 122743782 122744091 -159449573 + AluJb SINE Alu 1 312 0 517 227 0 10 chr1 122744871 122744968 -159448696 - MER5A DNA MER1_type -88 101 6 638 156 57 130 chr1 122745103 122745295 -159448369 + MER5B DNA MER1_type 1 178 0 2077 123 0 3 chr1 122745394 122745694 -159447970 + AluSg SINE Alu 1 299 -11 2711 99 20 172 chr1 122745795 122746430 -159447234 - LTR8 LTR ERV1 -152 539 1 271 264 101 62 chr1 122746430 122746559 -159447105 - MIR SINE MIR -73 135 2 323 175 63 0 chr1 122746696 122746759 -159446905 + MER94 DNA DNA 1 67 -67 1849 147 7 7 chr1 122747139 122747425 -159446239 + AluJb SINE Alu 1 286 -26 190 338 27 0 chr1 122747507 122747581 -159446083 + L2 LINE L2 2154 2229 -1085 * 438 269 63 80 chr1 122747578 122747816 -159445848 + MIR SINE MIR 11 244 -18 548 292 62 23 chr1 122749120 122749380 -159444284 + L2 LINE L2 1702 1971 -1343 186 103 0 0 chr1 122749530 122749559 -159444105 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 189 105 0 105 chr1 122749559 122749597 -159444067 - MIR SINE MIR -8 254 221 * 437 213 6 109 chr1 122749569 122749743 -159443921 - L2 LINE L2 -20 3293 3138 1851 158 10 0 chr1 122751129 122751420 -159442244 - AluSx SINE Alu -18 294 1 4523 107 27 5 chr1 122751835 122752462 -159441202 + L1PA16 LINE L1 5517 6157 -9 420 256 45 13 chr1 122752789 122752945 -159440719 + L1MC4 LINE L1 7616 7776 -266 386 235 144 7 chr1 122752958 122753111 -159440553 + L1MC4 LINE L1 7804 7977 -65 2116 119 3 3 chr1 122754428 122754722 -159438942 - AluSx SINE Alu -18 294 1 1688 166 7 14 chr1 122754808 122755097 -159438567 - AluJb SINE Alu -16 296 10 220 305 0 0 chr1 122755166 122755225 -159438439 + (CA)n Simple_repeat Simple_repeat 2 60 0 483 146 49 0 chr1 122755226 122755308 -159438356 + MER68 LTR ERV1 84 169 -393 262 293 147 17 chr1 122755523 122755639 -159438025 + MIR SINE MIR 57 187 -75 2931 173 36 13 chr1 122756059 122756586 -159437078 + MER68 LTR ERV1 1 539 -23 2100 191 46 68 chr1 122756623 122757140 -159436524 - MLT2B1 LTR ERVL -14 506 1 206 174 101 14 chr1 122757247 122757316 -159436348 + MIR SINE MIR 129 203 -59 263 280 53 50 chr1 122757318 122757471 -159436193 - L2 LINE L2 0 3272 3121 1877 142 14 17 chr1 122757471 122757766 -159435898 - AluSx SINE Alu -18 294 1 263 280 53 50 chr1 122757766 122757798 -159435866 - L2 LINE L2 -151 3121 2750 6056 98 47 88 chr1 122757841 122759313 -159434351 - pTR5 LTR ERV1 -143 2295 743 1369 176 29 8 chr1 122759316 122759560 -159434104 + AluSx SINE Alu 34 282 -30 193 77 0 0 chr1 122759560 122759586 -159434078 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 252 250 0 0 chr1 122759617 122759669 -159433995 + MIR SINE MIR 209 260 -2 2161 96 20 0 chr1 122759834 122760136 -159433528 - AluSp SINE Alu -5 308 1 288 276 269 6 chr1 122760149 122760305 -159433359 + MIR SINE MIR 66 262 0 2120 111 0 3 chr1 122760386 122760683 -159432981 - AluSx SINE Alu -16 296 1 1939 148 0 3 chr1 122760993 122761298 -159432366 + AluSx SINE Alu 1 304 -8 452 272 127 12 chr1 122761317 122761404 -159432260 - L2 LINE L2 0 3313 3237 2115 112 10 0 chr1 122761404 122761708 -159431956 + AluSx SINE Alu 1 307 -5 452 272 127 12 chr1 122761708 122761793 -159431871 - L2 LINE L2 -76 3237 3121 1504 147 79 21 chr1 122762050 122762329 -159431335 - AluJo SINE Alu -17 295 1 2439 68 3 0 chr1 122762408 122762715 -159430949 + AluY SINE Alu 1 308 -3 250 207 12 61 chr1 122762766 122762848 -159430816 + MIR SINE MIR 117 194 -68 1289 177 169 32 chr1 122762865 122763103 -159430561 + Tigger2a DNA MER2_type 4 208 -2500 2100 82 0 4 chr1 122763103 122763382 -159430282 + AluSc SINE Alu 1 278 -31 216 0 0 0 chr1 122763389 122763413 -159430251 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1289 177 169 32 chr1 122763413 122763510 -159430154 + Tigger2a DNA MER2_type 213 394 -40 273 262 40 24 chr1 122764098 122764224 -159429440 - L1ME4a LINE L1 -2 6119 5992 576 167 46 0 chr1 122764230 122764338 -159429326 - FLAM_A SINE Alu -7 135 23 3588 119 129 2 chr1 122764384 122764663 -159429001 + Tigger3b DNA MER2_type 1 243 -2786 2131 96 17 0 chr1 122764663 122764956 -159428708 - AluSx SINE Alu -14 298 1 3588 119 129 2 chr1 122764956 122765297 -159428367 + Tigger3b DNA MER2_type 243 697 -535 1497 150 169 19 chr1 122765297 122765611 -159428053 + Tigger3b DNA MER2_type 871 1231 0 1820 148 3 16 chr1 122765737 122766042 -159427622 + AluJb SINE Alu 1 301 -11 194 280 183 21 chr1 122767002 122767095 -159426569 + MIR SINE MIR 32 139 -69 2207 100 3 0 chr1 122767177 122767476 -159426188 + AluSx SINE Alu 1 300 -12 2016 94 0 14 chr1 122767580 122767857 -159425807 - AluSq SINE Alu -40 273 1 23 33 0 0 chr1 122767859 122767889 -159425775 + AT_rich Low_complexity Low_complexity 1 30 0 803 133 0 17 chr1 122767903 122768023 -159425641 - FLAM_C SINE Alu -15 118 1 462 147 69 69 chr1 122768038 122768140 -159425524 + MIR SINE MIR 159 260 -2 242 340 98 41 chr1 122768072 122768266 -159425398 - MIR SINE MIR -30 232 28 * 299 221 77 67 chr1 122768323 122768427 -159425237 + MIR SINE MIR 157 261 -1 2323 60 10 0 chr1 122768935 122769234 -159424430 + AluSp SINE Alu 1 302 -11 404 241 93 9 chr1 122770625 122770733 -159422931 - L2 LINE L2 -2 3311 3195 212 171 0 0 chr1 122771252 122771287 -159422377 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 710 168 29 29 chr1 122771450 122771587 -159422077 - FLAM_C SINE Alu -1 142 6 306 0 0 0 chr1 122771605 122771639 -159422025 + (CA)n Simple_repeat Simple_repeat 2 35 0 1817 117 4 7 chr1 122771665 122771939 -159421725 - AluSx SINE Alu -13 299 27 1116 128 174 58 chr1 122772014 122772272 -159421392 + MER7A DNA MER2_type 60 345 -1 1041 201 0 60 chr1 122772717 122772951 -159420713 + AluJo SINE Alu 1 220 -92 23 33 0 0 chr1 122772991 122773021 -159420643 + AT_rich Low_complexity Low_complexity 1 30 0 996 153 12 0 chr1 122773043 122773206 -159420458 + AluJb SINE Alu 123 287 -25 2274 75 3 0 chr1 122773339 122773633 -159420031 - AluY SINE Alu -16 295 1 195 286 0 18 chr1 122773939 122773995 -159419669 + MER5A DNA MER1_type 20 74 -115 23 33 0 0 chr1 122774055 122774085 -159419579 + AT_rich Low_complexity Low_complexity 1 30 0 1384 91 11 0 chr1 122774462 122774649 -159419015 - AluSg/x SINE Alu -14 296 108 369 320 0 10 chr1 122775198 122775301 -159418363 - MIR SINE MIR -149 113 12 2590 36 0 0 chr1 122776602 122776911 -159416753 - AluYa5 SINE Alu -2 309 1 207 0 0 0 chr1 122776975 122776998 -159416666 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 1628 152 19 7 chr1 122777683 122777953 -159415711 - AluJo SINE Alu -39 273 1 870 165 0 80 chr1 122778024 122778186 -159415478 - AluJo SINE Alu -17 295 150 1997 136 7 0 chr1 122778186 122778481 -159415183 - AluSx SINE Alu -15 297 1 870 165 0 80 chr1 122778481 122778518 -159415146 - AluJo SINE Alu -162 150 112 1456 166 113 52 chr1 122779893 122780237 -159413427 - MLT1A1 LTR MaLR 0 365 1 682 140 0 0 chr1 122780312 122780412 -159413252 - AluJ/FLAM SINE Alu -211 101 2 1983 188 35 21 chr1 122780623 122781054 -159412610 + L1MB7 LINE L1 5748 6184 0 616 167 125 42 chr1 122782514 122782658 -159411006 + MIR SINE MIR 7 162 -100 277 324 0 20 chr1 122784678 122784780 -159408884 + MER5A DNA MER1_type 44 143 -46 410 261 65 36 chr1 122784834 122784972 -159408692 + MIR SINE MIR 48 189 -73 191 184 61 41 chr1 122785954 122786003 -159407661 + MIR SINE MIR 27 76 -132 2276 83 3 0 chr1 122786374 122786674 -159406990 + AluSc SINE Alu 1 301 -8 753 113 0 0 chr1 122786685 122786791 -159406873 + FLAM_C SINE Alu 3 108 -35 330 315 31 50 chr1 122786863 122787085 -159406579 + Charlie8 DNA MER1_type 2200 2417 0 191 194 0 0 chr1 122787091 122787127 -159406537 + MIR SINE MIR 111 146 -62 447 288 54 53 chr1 122787130 122787315 -159406349 + MIR SINE MIR 7 192 -66 243 272 248 0 chr1 122787323 122787448 -159406216 - MIR SINE MIR 0 262 107 3761 162 19 16 chr1 122787761 122788155 -159405509 - L1MB3 LINE L1 -1 6182 5784 297 51 0 0 chr1 122788155 122788194 -159405470 + (CA)n Simple_repeat Simple_repeat 2 40 0 3761 162 19 16 chr1 122788194 122788496 -159405168 - L1MB3 LINE L1 -399 5784 5484 385 110 27 14 chr1 122788497 122788570 -159405094 + CT-rich Low_complexity Low_complexity 1 74 0 1300 155 46 62 chr1 122788573 122788758 -159404906 - L1MB3 LINE L1 -684 5487 5300 2272 97 7 0 chr1 122788758 122789066 -159404598 + AluSg SINE Alu 1 310 0 1300 155 46 62 chr1 122789066 122789315 -159404349 - L1MB3 LINE L1 -871 5300 5057 1850 136 0 13 chr1 122789371 122789672 -159403992 - AluJb SINE Alu -14 298 2 333 222 213 0 chr1 122790168 122790276 -159403388 - L1MC4 LINE L1 0 8042 7912 211 200 0 22 chr1 122790281 122790326 -159403338 + CT-rich Low_complexity Low_complexity 4 47 0 289 194 72 0 chr1 122790336 122790475 -159403189 + (TA)n Simple_repeat Simple_repeat 2 150 0 665 188 68 94 chr1 122790478 122790539 -159403125 - L1MC4 LINE L1 -130 7912 7851 2302 78 3 0 chr1 122790539 122790832 -159402832 - AluSq SINE Alu -19 294 1 665 188 68 94 chr1 122790832 122791004 -159402660 - L1MC4 LINE L1 -191 7851 7685 755 237 43 48 chr1 122791323 122791530 -159402134 + MIR SINE MIR 21 226 -36 1835 210 65 72 chr1 122791879 122792450 -159401214 - MER74B LTR ERVL 0 622 56 371 336 37 0 chr1 122792558 122792665 -159400999 + L2 LINE L2 3112 3222 -50 406 259 78 9 chr1 122792860 122792976 -159400688 - L2 LINE L2 -16 3256 3133 239 280 43 21 chr1 122793210 122793303 -159400361 + MLT1J LTR MaLR 228 322 -189 368 191 75 21 chr1 122793340 122793434 -159400230 + MLT1L LTR MaLR 513 611 -4 773 158 0 38 chr1 122793490 122793623 -159400041 - FLAM_C SINE Alu -1 132 5 209 295 101 29 chr1 122793636 122793775 -159399889 - L2 LINE L2 -237 3035 2887 1699 139 11 18 chr1 122794784 122795065 -159398599 - MER50 LTR ERV1 -23 711 433 1554 116 18 0 chr1 122795059 122795284 -159398380 - MER50 LTR ERV1 -505 229 1 * 345 266 165 19 chr1 122795542 122795700 -159397964 + MIR SINE MIR 47 227 -35 240 279 44 0 chr1 122795731 122795799 -159397865 + MIR SINE MIR 81 151 -57 214 154 0 58 chr1 122795984 122796036 -159397628 + CT-rich Low_complexity Low_complexity 4 52 0 368 308 18 13 chr1 122796588 122796716 -159396948 - MIR SINE MIR -47 161 36 186 242 264 33 chr1 122797224 122797315 -159396349 + MIR SINE MIR 31 142 -66 225 241 121 17 chr1 122797381 122797439 -159396225 - L2 LINE L2 0 3272 3209 183 156 0 0 chr1 122798963 122798995 -159394669 + A-rich Low_complexity Low_complexity 1 32 0 1891 130 11 7 chr1 122799288 122799572 -159394092 + AluJb SINE Alu 1 285 -27 200 167 0 0 chr1 122799572 122799602 -159394062 + (TG)n Simple_repeat Simple_repeat 1 30 0 1834 141 7 13 chr1 122800834 122801133 -159392531 - AluJb SINE Alu -15 297 1 21 36 0 0 chr1 122801222 122801250 -159392414 + AT_rich Low_complexity Low_complexity 1 28 0 909 237 56 4 chr1 122802404 122802653 -159391011 + MIR SINE MIR 1 262 0 1152 127 46 66 chr1 122802763 122802779 -159390885 - MER33 DNA MER1_type -2331 254 239 2504 62 0 0 chr1 122802779 122803087 -159390577 + AluY SINE Alu 1 308 -3 2025 116 7 0 chr1 122803096 122803390 -159390274 + AluSx SINE Alu 1 296 -16 1152 127 46 66 chr1 122803390 122803622 -159390042 - MER33 DNA MER1_type -2354 231 1 1699 162 14 0 chr1 122803697 122803987 -159389677 + AluJb SINE Alu 1 294 -18 1467 184 61 7 chr1 122804431 122804725 -159388939 - AluSg SINE Alu 0 310 1 182 233 183 0 chr1 122804759 122804819 -159388845 + L2 LINE L2 3234 3304 -9 324 300 180 0 chr1 122805388 122805538 -159388126 + MIR SINE MIR 29 205 -57 3409 87 23 16 chr1 122805733 122806217 -159387447 + LTR15 LTR ERV1 1 487 -6 399 233 42 33 chr1 122806679 122806733 -159386931 - MIR SINE MIR -79 183 131 192 40 0 0 chr1 122806733 122806758 -159386906 + (CAA)n Simple_repeat Simple_repeat 2 26 0 399 233 42 33 chr1 122806758 122806823 -159386841 - MIR SINE MIR -131 131 63 313 282 24 0 chr1 122806885 122806970 -159386694 - MIR3 SINE MIR -23 185 99 2110 158 28 53 chr1 122807081 122807474 -159386190 + MLT1B LTR MaLR 1 383 -7 475 236 11 93 chr1 122808764 122808946 -159384718 + MIR SINE MIR 84 250 -12 463 207 100 40 chr1 122809005 122809155 -159384509 - LTR67 LTR ERVL -5 552 394 262 224 17 52 chr1 122809247 122809305 -159384359 - LTR67 LTR ERVL -391 166 111 886 130 0 22 chr1 122810043 122810181 -159383483 - AluJo SINE Alu -177 135 1 2510 77 10 6 chr1 122810338 122810649 -159383015 - AluSp SINE Alu -1 312 1 224 238 100 25 chr1 122810676 122810756 -159382908 + L2 LINE L2 3186 3271 -1 2837 118 18 9 chr1 122811030 122811469 -159382195 - MER65A LTR ERV1 0 445 3 397 250 125 0 chr1 122811474 122811586 -159382078 - MIR SINE MIR -65 197 72 590 267 57 0 chr1 122812199 122812375 -159381289 - MIR SINE MIR -3 259 74 301 225 0 62 chr1 122813489 122813522 -159380142 + MER34 LTR ERV1 1 35 -507 2449 164 71 112 chr1 122813522 122814280 -159379384 + LTR8A LTR ERV1 1 727 0 301 225 0 62 chr1 122814280 122814326 -159379338 + MER34 LTR ERV1 34 75 -467 1209 209 87 145 chr1 122814328 122814879 -159378785 + LTR48B LTR ERV1 115 644 0 2451 85 0 0 chr1 122815038 122815333 -159378331 - AluSx SINE Alu -15 297 3 532 227 67 5 chr1 122815406 122815600 -159378064 - LTR37B LTR ERV1 0 468 263 1236 206 4 0 chr1 122815608 122815856 -159377808 + L1M4 LINE L1 4839 5087 -1059 1913 141 20 17 chr1 122815857 122816154 -159377510 - AluJb SINE Alu -14 298 1 1851 189 3 37 chr1 122816154 122816536 -159377128 + LTR39 LTR ERV1 415 783 0 1636 141 22 29 chr1 122816552 122816864 -159376800 + L1MB3 LINE L1 5834 6143 -40 2173 133 0 0 chr1 122816865 122817159 -159376505 + AluSx SINE Alu 3 296 -16 1025 203 3 105 chr1 122817179 122817494 -159376170 - LTR37B LTR ERV1 -185 283 1 278 268 165 21 chr1 122818929 122819026 -159374638 - MIR SINE MIR -132 130 20 25 31 0 0 chr1 122819037 122819069 -159374595 + AT_rich Low_complexity Low_complexity 1 32 0 366 271 90 43 chr1 122819069 122819346 -159374318 - L1ME4a LINE L1 -4 6117 5828 718 257 22 0 chr1 122820344 122820527 -159373137 - MER117 DNA MER1_type -10 187 1 971 132 0 0 chr1 122820639 122820768 -159372896 + FLAM_C SINE Alu 1 129 -14 1734 165 4 0 chr1 122820889 122821149 -159372515 - AluSx SINE Alu -41 271 11 1571 124 0 0 chr1 122821323 122821532 -159372132 - AluSx SINE Alu -103 209 1 2501 90 3 0 chr1 122821948 122822258 -159371406 - AluSp SINE Alu -2 311 1 257 242 16 0 chr1 122823576 122823638 -159370026 - MIR SINE MIR -139 123 61 337 250 139 33 chr1 122823670 122823850 -159369814 + LTR33 LTR ERVL 11 209 -312 404 211 137 0 chr1 122824827 122824922 -159368742 + MIR SINE MIR 151 258 -4 198 0 0 0 chr1 122825120 122825142 -159368522 + (GGGAA)n Simple_repeat Simple_repeat 2 23 0 454 135 34 0 chr1 122825142 122825231 -159368433 + GA-rich Low_complexity Low_complexity 1 92 0 270 0 0 0 chr1 122825231 122825261 -159368403 + (TA)n Simple_repeat Simple_repeat 2 31 0 2338 105 0 10 chr1 122825261 122825565 -159368099 - AluSx SINE Alu -11 301 1 472 148 0 0 chr1 122826832 122826913 -159366751 - L1MB4 LINE L1 -6 6174 6094 1968 127 67 0 chr1 122827145 122827429 -159366235 + AluSx SINE Alu 1 303 -9 406 158 37 12 chr1 122827776 122827858 -159365806 - MLT1L LTR MaLR -149 466 383 376 161 0 0 chr1 122828205 122828267 -159365397 - MER112 DNA MER1_type 0 260 199 915 223 9 24 chr1 122828270 122828481 -159365183 + MER58A DNA MER1_type 17 224 0 557 215 55 75 chr1 122828482 122828682 -159364982 - MER112 DNA MER1_type -57 203 8 439 304 14 0 chr1 122830120 122830268 -159363396 - LTR16C LTR ERVL -2 489 340 2892 86 11 9 chr1 122830505 122830938 -159362726 + LTR7 LTR ERV1 1 434 -16 342 0 0 0 chr1 122831179 122831217 -159362447 + (CA)n Simple_repeat Simple_repeat 2 39 0 687 271 131 37 chr1 122831227 122831249 -159362415 - L3 LINE CR1 -12 1565 1546 2934 154 27 29 chr1 122831249 122831809 -159361855 - MER89 LTR ERV1 0 559 1 687 271 131 37 chr1 122831809 122832030 -159361634 - L3 LINE CR1 -31 1546 1299 332 317 99 28 chr1 122832050 122832192 -159361472 + MIR SINE MIR 2 153 -109 2199 101 67 25 chr1 122832439 122832796 -159360868 + THE1C LTR MaLR 4 375 0 1999 142 0 7 chr1 122833337 122833632 -159360032 + AluSx SINE Alu 1 293 -19 244 227 30 5 chr1 122834051 122834118 -159359546 - MIR SINE MIR -131 77 18 189 255 117 0 chr1 122834112 122834206 -159359458 + MIR SINE MIR 31 135 -127 * 951 258 114 40 chr1 122834910 122835332 -159358332 - MLT1C LTR MaLR -9 458 6 427 301 66 0 chr1 122835362 122835498 -159358166 - MIR SINE MIR -71 191 47 242 343 111 32 chr1 122835508 122835823 -159357841 - L2 LINE L2 -351 2963 2624 521 276 29 6 chr1 122836285 122836455 -159357209 + LTR67 LTR ERVL 384 557 0 308 287 117 75 chr1 122836497 122836897 -159356767 - L2 LINE L2 -966 2348 1919 1962 165 30 0 chr1 122836897 122837200 -159356464 + AluJb SINE Alu 1 312 0 308 287 117 75 chr1 122837200 122837321 -159356343 - L2 LINE L2 -1395 1919 1805 752 178 0 0 chr1 122837651 122837769 -159355895 - FLAM_C SINE Alu -15 118 1 2005 185 25 3 chr1 122837959 122838316 -159355348 + MLT1A1 LTR MaLR 1 365 0 1918 65 0 4 chr1 122838359 122838588 -159355076 - AluY SINE Alu -2 309 82 199 211 13 13 chr1 122838590 122838666 -159354998 + CT-rich Low_complexity Low_complexity 2 77 0 2005 191 63 41 chr1 122838772 122839265 -159354399 - Charlie4a DNA MER1_type -2 506 3 2189 111 28 0 chr1 122839381 122839669 -159353995 - AluSx SINE Alu -16 296 1 292 246 0 0 chr1 122841180 122841237 -159352427 - MIR SINE MIR -27 235 179 183 344 16 0 chr1 122841215 122841276 -159352388 + L2 LINE L2 2654 2715 -599 * 953 157 54 0 chr1 122841276 122841423 -159352241 + FRAM SINE Alu 1 155 -21 982 274 129 33 chr1 122841436 122841786 -159351878 + L2 LINE L2 2713 3136 -177 2365 95 3 0 chr1 122841786 122842082 -159351582 - AluSx SINE Alu -15 297 1 982 274 129 33 chr1 122842082 122842279 -159351385 + L2 LINE L2 3136 3313 0 445 306 119 0 chr1 122842284 122842444 -159351220 - MIR SINE MIR -77 185 7 401 218 161 0 chr1 122842547 122842671 -159350993 - MER103 DNA DNA -20 146 3 23 0 0 0 chr1 122844249 122844272 -159349392 + AT_rich Low_complexity Low_complexity 1 23 0 398 217 43 43 chr1 122847049 122847164 -159346500 - MIR SINE MIR -76 132 18 343 264 129 29 chr1 122847234 122847374 -159346290 + MIR3 SINE MIR 39 192 -16 227 229 171 0 chr1 122847465 122847535 -159346129 + MER96 DNA MER1_type? 4 85 -90 869 267 65 0 chr1 122848126 122848358 -159345306 - MIR SINE MIR -3 259 13 313 364 42 0 chr1 122848385 122848503 -159345161 + L2 LINE L2 3186 3308 -5 213 39 0 0 chr1 122848505 122848531 -159345133 + (TG)n Simple_repeat Simple_repeat 1 26 0 497 243 9 0 chr1 122848551 122848658 -159345006 + MIR SINE MIR 31 138 -124 2804 7 0 0 chr1 122850612 122850911 -159342753 - AluYa5 SINE Alu -12 299 1 207 0 0 0 chr1 122850975 122850998 -159342666 + (TTTTTG)n Simple_repeat Simple_repeat 6 28 0 557 53 40 0 chr1 122851357 122851433 -159342231 - MADE1 DNA Mariner 0 80 2 2758 36 0 0 chr1 122851485 122851790 -159341874 + AluY SINE Alu 1 305 -6 1617 174 25 4 chr1 122851796 122852072 -159341592 - AluJo SINE Alu -30 282 1 2286 103 0 26 chr1 122852431 122852743 -159340921 + AluSx SINE Alu 1 304 -8 567 229 159 12 chr1 122852835 122853005 -159340659 + L2 LINE L2 3118 3312 -1 203 275 14 43 chr1 122853568 122853598 -159340066 + MIR3 SINE MIR 127 156 -52 2408 74 3 0 chr1 122853598 122853897 -159339767 - AluY SINE Alu -11 300 1 203 275 14 43 chr1 122853897 122853935 -159339729 + MIR3 SINE MIR 156 193 -15 2203 123 0 3 chr1 122854609 122854910 -159338754 - AluSx SINE Alu -12 300 1 191 368 74 11 chr1 122855187 122855282 -159338382 + L2 LINE L2 3133 3233 -39 185 353 0 20 chr1 122855265 122855316 -159338348 + MIR SINE MIR 23 72 -190 * 423 267 22 44 chr1 122855532 122855667 -159337997 + MIR SINE MIR 57 188 -74 2294 105 20 3 chr1 122855686 122855992 -159337672 + AluSx SINE Alu 2 312 0 1952 142 10 0 chr1 122856733 122857021 -159336643 - AluJb SINE Alu -21 291 1 276 273 0 81 chr1 122857027 122857126 -159336538 - MIR SINE MIR -67 195 105 1411 123 0 0 chr1 122857147 122857334 -159336330 - AluSq SINE Alu -22 291 105 737 202 174 32 chr1 122857871 122858096 -159335568 + MIR SINE MIR 7 257 -5 345 247 165 93 chr1 122858160 122858354 -159335310 - MIR SINE MIR 0 262 55 275 275 141 0 chr1 122858689 122858800 -159334864 - MIR3 SINE MIR -21 187 59 244 358 83 0 chr1 122858827 122858947 -159334717 - MIR3 SINE MIR -76 132 3 327 282 111 17 chr1 122859126 122859243 -159334421 + L2 LINE L2 3143 3270 -2 518 194 269 20 chr1 122859253 122859454 -159334210 - MER112 DNA MER1_type -1 255 5 204 271 128 53 chr1 122861108 122861241 -159332423 + MIR SINE MIR 94 236 -26 * 516 293 20 0 chr1 122861220 122861367 -159332297 - MIR SINE MIR -49 213 64 486 297 48 43 chr1 122862074 122862283 -159331381 - MIR SINE MIR -33 229 20 247 278 0 0 chr1 122862388 122862442 -159331222 + L2 LINE L2 3205 3258 -14 365 335 98 10 chr1 122863047 122863241 -159330423 - MIR SINE MIR -5 257 47 343 289 89 44 chr1 122864199 122864379 -159329285 - MIR3 SINE MIR -17 191 4 335 311 122 12 chr1 122864518 122864682 -159328982 - L2 LINE L2 0 3313 3132 454 281 11 76 chr1 122865733 122865987 -159327677 - MIR SINE MIR -12 250 15 1813 138 0 0 chr1 122870356 122870624 -159323040 - AluSx SINE Alu -5 307 40 343 278 26 0 chr1 122871275 122871390 -159322274 + L2 LINE L2 2923 3040 -232 379 271 49 0 chr1 122872190 122872312 -159321352 + L2 LINE L2 2921 3048 -224 595 296 140 16 chr1 122872421 122872728 -159320936 - L2 LINE L2 -2 3311 2967 206 293 0 35 chr1 122872868 122872926 -159320738 + L2 LINE L2 3216 3271 -1 205 292 73 52 chr1 122873105 122873201 -159320463 - L2 LINE L2 -7 3265 3168 213 291 209 0 chr1 122874924 122875010 -159318654 - L2 LINE L2 -10 3303 3200 1579 236 82 11 chr1 122875591 122875955 -159317709 + MLT1B LTR MaLR 1 390 0 1755 160 114 2 chr1 122876557 122876951 -159316713 - MLT1D LTR MaLR 0 505 7 277 114 8 5 chr1 122877705 122877969 -159315695 + AluSq SINE Alu 1 305 0 379 242 158 24 chr1 122877983 122878148 -159315516 + MIR SINE MIR 32 218 -44 1620 246 78 78 chr1 122878448 122879041 -159314623 + MLT1E LTR MaLR 1 593 0 701 277 19 21 chr1 122879646 122879886 -159313778 + MIR SINE MIR 1 236 -26 350 316 22 15 chr1 122880222 122880358 -159313306 - MIR SINE MIR -60 202 66 278 244 58 12 chr1 122881289 122881375 -159312289 + MIR SINE MIR 63 152 -110 2013 161 43 60 chr1 122881375 122881564 -159312100 + MLT1B LTR MaLR 1 192 -198 1930 81 0 37 chr1 122881564 122881916 -159311748 + AluSc SINE Alu 18 359 0 2013 161 43 60 chr1 122881916 122882122 -159311542 + MLT1B LTR MaLR 192 390 0 290 277 28 85 chr1 122882275 122882452 -159311212 + MIR SINE MIR 46 212 -50 1939 125 31 0 chr1 122882786 122883074 -159310590 - AluSx SINE Alu -15 297 1 223 336 58 10 chr1 122883692 122883796 -159309868 + L2 LINE L2 3162 3270 -2 245 303 131 30 chr1 122884080 122884179 -159309485 - L2 LINE L2 -18 3254 3146 245 176 39 0 chr1 122885656 122885707 -159307957 - Charlie8 DNA MER1_type -2248 169 117 410 259 1 25 chr1 122885713 122885838 -159307826 - L1MC5 LINE L1 0 8042 7806 324 308 89 0 chr1 122886208 122886354 -159307310 - L2 LINE L2 0 3313 3155 294 29 0 0 chr1 122886356 122886391 -159307273 + (TG)n Simple_repeat Simple_repeat 2 36 0 2044 165 107 2 chr1 122886404 122886805 -159306859 + Tigger4(Zombi) DNA MER2_type 1 443 -2288 462 111 37 0 chr1 122886802 122886825 -159306839 + Tigger4(Zombi) DNA MER2_type 2646 2667 -64 * 207 0 0 0 chr1 122886825 122886848 -159306816 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 462 111 37 0 chr1 122886848 122886905 -159306759 + Tigger4(Zombi) DNA MER2_type 2667 2729 -2 354 45 0 0 chr1 122886912 122886956 -159306708 + (TG)n Simple_repeat Simple_repeat 2 45 0 417 212 40 10 chr1 122887116 122887215 -159306449 + MLT1K LTR MaLR 487 588 0 2869 88 3 0 chr1 122887760 122888123 -159305541 + THE1B LTR MaLR 1 364 0 275 274 113 0 chr1 122888146 122888252 -159305412 + MIR SINE MIR 99 216 -46 1816 172 3 0 chr1 122888329 122888632 -159305032 - AluSq SINE Alu -9 304 1 369 0 0 0 chr1 122888671 122888712 -159304952 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 2221 75 10 0 chr1 122888713 122889007 -159304657 - AluY SINE Alu -14 297 1 204 275 138 0 chr1 122889203 122889283 -159304381 - MIR SINE MIR -71 191 101 2436 70 0 3 chr1 122889645 122889957 -159303707 + AluY SINE Alu 1 311 0 248 279 35 12 chr1 122890153 122890239 -159303425 + L2 LINE L2 3184 3271 -1 400 260 130 14 chr1 122891050 122891196 -159302468 + MIR SINE MIR 20 182 -80 1793 163 76 137 chr1 122891977 122892531 -159301133 + MLT2B1 LTR ERVL 1 520 0 241 301 101 44 chr1 122893240 122893430 -159300234 + MIR SINE MIR 16 212 -50 414 248 213 0 chr1 122893562 122893703 -159299961 - MER5A DNA MER1_type 0 189 19 295 195 27 0 chr1 122893853 122893979 -159299685 + GA-rich Low_complexity Low_complexity 1 129 0 391 258 65 0 chr1 122895980 122896104 -159297560 + L2 LINE L2 2458 2589 -725 552 267 57 0 chr1 122896839 122897015 -159296649 + MIR SINE MIR 74 259 -3 371 250 125 0 chr1 122897628 122897740 -159295924 + MIR SINE MIR 72 197 -65 970 178 46 10 chr1 122897745 122897942 -159295722 + MER65A LTR ERV1 3 206 -239 351 237 21 0 chr1 122898085 122898178 -159295486 + L2 LINE L2 2475 2569 -745 447 52 0 0 chr1 122898538 122898596 -159295068 + (TG)n Simple_repeat Simple_repeat 1 58 0 430 315 85 15 chr1 122898848 122899048 -159294616 - MIR SINE MIR -43 219 6 200 333 59 10 chr1 122899205 122899307 -159294357 + MIR SINE MIR 56 162 -100 393 321 42 26 chr1 122900039 122900229 -159293435 + MIR SINE MIR 20 212 -50 237 200 22 0 chr1 122900928 122900973 -159292691 + L2 LINE L2 3156 3201 -71 203 88 29 0 chr1 122901008 122901042 -159292622 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 822 269 52 28 chr1 122901163 122901453 -159292211 + L1ME1 LINE L1 5865 6161 -5 208 234 31 31 chr1 122901616 122901680 -159291984 + L2 LINE L2 3209 3272 0 487 287 103 5 chr1 122902681 122902876 -159290788 + MIR SINE MIR 37 250 -12 504 310 87 18 chr1 122904055 122904284 -159289380 + MIR SINE MIR 10 254 -8 397 311 31 4 chr1 122904636 122904793 -159288871 - MIR SINE MIR -61 147 30 313 225 22 0 chr1 122904851 122904940 -159288724 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 328 17 8 chr1 122906347 122906466 -159287198 + MIR SINE MIR 22 141 -67 750 263 105 4 chr1 122906779 122907007 -159286657 + MIR SINE MIR 7 257 -5 255 300 160 38 chr1 122907182 122907445 -159286219 + L2 LINE L2 2473 2767 -547 399 296 26 16 chr1 122907802 122907984 -159285680 + MIR SINE MIR 73 255 -7 239 276 79 0 chr1 122909540 122909616 -159284048 + MIR SINE MIR 36 117 -145 1122 223 24 12 chr1 122909617 122909864 -159283800 + MIR SINE MIR 2 251 -11 300 161 62 62 chr1 122911162 122911243 -159282421 - L2 LINE L2 0 3272 3192 1998 237 32 15 chr1 122911317 122911848 -159281816 - L1ME1 LINE L1 -5 6161 5622 182 300 94 81 chr1 122912664 122912824 -159280840 - L2 LINE L2 -52 3220 3059 724 272 38 9 chr1 122913168 122913381 -159280283 - MIR SINE MIR -1 261 43 258 105 0 0 chr1 122913855 122913893 -159279771 + (CAT)n Simple_repeat Simple_repeat 2 39 0 245 339 45 9 chr1 122914806 122914918 -159278746 + MIR SINE MIR 133 248 -14 272 242 75 58 chr1 122915291 122915411 -159278253 + MIR SINE MIR 79 200 -62 206 312 18 92 chr1 122915460 122915569 -159278095 - L3 LINE CR1 -9 1568 1468 232 192 58 19 chr1 122915780 122915832 -159277832 - MIR SINE MIR -87 121 68 381 237 66 72 chr1 122916641 122916793 -159276871 + MIR SINE MIR 1 147 -61 377 328 15 0 chr1 122918956 122919090 -159274574 + L2 LINE L2 2662 2797 -517 1398 160 76 30 chr1 122919149 122919412 -159274252 + AluJo SINE Alu 21 295 -17 399 206 43 0 chr1 122919565 122919657 -159274007 + MLT1H LTR MaLR 454 549 0 391 336 0 0 chr1 122920558 122920677 -159272987 - MIR3 SINE MIR -9 199 81 430 313 141 6 chr1 122921193 122921356 -159272308 + MIR3 SINE MIR 19 203 -5 2336 116 0 0 chr1 122921381 122921691 -159271973 + AluSx SINE Alu 1 310 -2 374 320 0 10 chr1 122922992 122923095 -159270569 + MIR SINE MIR 12 113 -149 223 385 47 24 chr1 122923501 122923670 -159269994 - L3 LINE CR1 -1403 174 2 1048 265 78 12 chr1 122924170 122924502 -159269162 + L2 LINE L2 2053 2406 -908 2085 257 162 11 chr1 122924714 122924733 -159268931 + L2 LINE L2 2328 2343 -970 1833 137 0 8 chr1 122924733 122924996 -159268668 - AluSx SINE Alu -51 261 1 2085 257 162 11 chr1 122924996 122925837 -159267827 + L2 LINE L2 2343 3308 -5 860 257 106 0 chr1 122925811 122926037 -159267627 - MIR SINE MIR -12 250 1 * 188 250 25 0 chr1 122926299 122926339 -159267325 - L2 LINE L2 -21 3251 3211 * 498 260 17 85 chr1 122926307 122926484 -159267180 - MIR SINE MIR -24 238 74 590 201 208 0 chr1 122927505 122927659 -159266005 - MER53 DNA DNA -1 188 3 265 328 112 24 chr1 122927957 122928082 -159265582 + MIR SINE MIR 126 261 -1 923 226 71 50 chr1 122928931 122929214 -159264450 - MER115 DNA AcHobo -14 679 391 2395 197 60 17 chr1 122929215 122929698 -159263966 - MLT1D LTR MaLR 0 505 2 223 186 24 31 chr1 122930249 122930378 -159263286 + GA-rich Low_complexity Low_complexity 1 128 0 217 279 89 0 chr1 122931353 122931432 -159262232 + L2 LINE L2 3147 3232 -40 408 327 140 33 chr1 122931660 122932408 -159261256 - L2 LINE L2 -1 3312 2485 637 286 144 61 chr1 122932515 122932730 -159260934 - MLT1L LTR MaLR -98 517 321 1733 139 0 96 chr1 122932730 122933053 -159260611 - AluJb SINE Alu -8 294 3 637 286 144 61 chr1 122933053 122933309 -159260355 - MLT1L LTR MaLR -294 321 7 354 311 33 67 chr1 122933503 122933683 -159259981 - MER5A DNA MER1_type 0 189 16 318 297 34 25 chr1 122933670 122933788 -159259876 - MIR3 SINE MIR -38 170 52 * 408 276 48 66 chr1 122934743 122934971 -159258693 + MIR SINE MIR 39 262 0 327 227 15 0 chr1 122935651 122935717 -159257947 + MIR SINE MIR 90 156 -106 1141 258 115 12 chr1 122936429 122936828 -159256836 - LTR16A LTR ERVL -1 449 10 222 246 0 18 chr1 122936949 122937006 -159256658 - MIR3 SINE MIR -11 197 142 364 240 0 0 chr1 122937395 122937470 -159256194 + MIR SINE MIR 182 256 -6 487 246 72 7 chr1 122937544 122937682 -159255982 + L2 LINE L2 3164 3310 -3 326 320 0 0 chr1 122937813 122937913 -159255751 + (TGGA)n Simple_repeat Simple_repeat 1 100 0 2244 113 0 13 chr1 122938486 122938787 -159254877 + AluSx SINE Alu 5 301 -11 269 249 39 77 chr1 122938947 122939128 -159254536 + MER20B DNA MER1_type 6 179 -604 221 217 43 29 chr1 122940009 122940078 -159253586 - MIR3 SINE MIR -127 81 12 287 307 243 24 chr1 122940980 122941404 -159252260 + L2 LINE L2 2448 2964 -350 484 310 75 5 chr1 122941502 122941702 -159251962 + MIR SINE MIR 29 242 -20 313 315 82 31 chr1 122941886 122942143 -159251521 - LTR16C LTR ERVL -100 391 122 237 125 0 0 chr1 122942359 122942390 -159251274 + (TCCC)n Simple_repeat Simple_repeat 4 37 -6 2182 103 3 3 chr1 122942390 122942682 -159250982 - AluSg SINE Alu -18 292 1 237 125 0 0 chr1 122942682 122942690 -159250974 + (TCCC)n Simple_repeat Simple_repeat 36 43 0 2163 80 3 16 chr1 122942941 122943291 -159250373 - MER4A LTR ERV1 0 664 261 613 130 0 20 chr1 122943291 122943391 -159250273 - MER4A LTR ERV1 -566 98 1 208 317 77 39 chr1 122943804 122943908 -159249756 + MIR SINE MIR 40 147 -61 281 247 27 14 chr1 122945481 122945554 -159248110 + MIR SINE MIR 2 75 -187 282 314 36 57 chr1 122945886 122946026 -159247638 + MIR SINE MIR 107 243 -19 1781 195 0 0 chr1 122946798 122947095 -159246569 - AluJb SINE Alu -15 297 1 712 283 55 62 chr1 122947293 122947696 -159245968 - L1M4 LINE L1 -743 5403 5004 2018 129 31 7 chr1 122948038 122948325 -159245339 - AluSg SINE Alu -16 294 1 386 306 123 6 chr1 122948702 122948878 -159244786 + MIR3 SINE MIR 4 201 -7 378 219 8 84 chr1 122949130 122949249 -159244415 + MIR3 SINE MIR 89 198 -10 524 285 191 0 chr1 122949471 122949759 -159243905 - L1ME4a LINE L1 -1 6120 5778 428 259 65 53 chr1 122949948 122950118 -159243546 - MIR SINE MIR -69 193 22 425 293 50 29 chr1 122950838 122950978 -159242686 + MIR3 SINE MIR 17 159 -49 830 239 38 64 chr1 122951059 122951323 -159242341 + MIR SINE MIR 1 257 -5 595 325 39 21 chr1 122952008 122952294 -159241370 + L1ME LINE L1 5532 5822 -299 642 236 28 0 chr1 122952524 122952668 -159240996 - MER45A DNA AcHobo 0 178 31 218 262 60 24 chr1 122952920 122953004 -159240660 - L2 LINE L2 -1 3312 3226 205 292 46 0 chr1 122953270 122953335 -159240329 - L3 LINE CR1 -607 970 903 334 336 16 16 chr1 122953378 122953506 -159240158 - L3 LINE CR1 -869 708 581 732 202 0 0 chr1 122954076 122954200 -159239464 - FLAM_A SINE Alu -9 124 1 1342 266 117 40 chr1 122954223 122955032 -159238632 - HAL1b LINE L1 -65 1283 412 1178 266 143 47 chr1 122955032 122955365 -159238299 + L2 LINE L2 2304 2604 -709 1098 135 0 0 chr1 122955365 122955543 -159238121 + (CCTAT)n Simple_repeat Simple_repeat 3 180 0 1178 266 143 47 chr1 122955543 122955737 -159237927 + L2 LINE L2 2604 2778 -535 360 0 0 0 chr1 122955737 122955777 -159237887 + (CTCA)n Simple_repeat Simple_repeat 3 42 0 1178 266 143 47 chr1 122955777 122956177 -159237487 + L2 LINE L2 2778 3313 0 621 327 63 62 chr1 122956189 122956681 -159236983 - HAL1b LINE L1 -942 1476 3 2904 207 46 77 chr1 122956695 122957631 -159236033 - L1ME1 LINE L1 -1 6165 5225 329 157 0 0 chr1 122957631 122957682 -159235982 + MADE1 DNA Mariner 30 80 0 2904 207 46 77 chr1 122957682 122957936 -159235728 - L1ME1 LINE L1 -941 5225 4965 451 279 102 0 chr1 122958319 122958466 -159235198 - MIR SINE MIR -55 207 46 451 231 238 9 chr1 122959731 122959915 -159233749 + MIR SINE MIR 34 251 -11 198 0 0 0 chr1 122959926 122959948 -159233716 + (CAT)n Simple_repeat Simple_repeat 3 24 0 413 325 90 10 chr1 122959974 122960174 -159233490 + MIR SINE MIR 35 250 -12 857 266 153 31 chr1 122960302 122960817 -159232847 - MLT1K LTR MaLR -9 579 2 563 270 75 11 chr1 122961176 122961350 -159232314 + MIR3 SINE MIR 21 205 -3 508 290 114 52 chr1 122961641 122961869 -159231795 - MIR SINE MIR -31 231 1 785 257 138 25 chr1 122961919 122962195 -159231469 - L2 LINE L2 -1 3312 3006 593 272 66 24 chr1 122962217 122962425 -159231239 + MIR SINE MIR 41 261 -1 240 213 64 75 chr1 122962524 122962618 -159231046 + MIR3 SINE MIR 11 103 -105 340 296 69 8 chr1 122962720 122962850 -159230814 + MIR SINE MIR 57 192 -41 521 256 100 17 chr1 122963415 122963595 -159230069 + MIR3 SINE MIR 7 201 -7 1420 272 100 22 chr1 122964557 122965306 -159228358 + L2 LINE L2 2436 3251 -62 566 298 75 0 chr1 122965468 122965629 -159228035 + MIR3 SINE MIR 31 203 -5 367 272 105 9 chr1 122965682 122965796 -159227868 + MIR SINE MIR 21 145 -63 594 249 100 26 chr1 122965894 122966123 -159227541 + MIR SINE MIR 17 262 0 2095 161 20 164 chr1 122966648 122967295 -159226369 - MLT2B3 LTR ERVL 0 554 1 666 274 38 11 chr1 122967307 122967493 -159226171 + MIR SINE MIR 44 234 -28 1890 81 0 4 chr1 122968293 122968529 -159225135 + AluSq SINE Alu 77 311 -2 465 228 148 53 chr1 122968616 122968734 -159224930 + MIR SINE MIR 49 193 -69 2249 166 52 5 chr1 122968734 122969138 -159224526 - MSTB LTR MaLR 0 426 4 465 228 148 53 chr1 122969138 122969208 -159224456 + MIR SINE MIR 193 255 -7 401 314 71 43 chr1 122969185 122969395 -159224269 - MIR SINE MIR -19 243 28 * 569 191 127 25 chr1 122970644 122970801 -159222863 - MIR SINE MIR -70 192 20 327 25 0 0 chr1 122971801 122971841 -159221823 + (TG)n Simple_repeat Simple_repeat 2 41 0 327 104 0 0 chr1 122973079 122973127 -159220537 + (TA)n Simple_repeat Simple_repeat 1 48 0 314 121 0 17 chr1 122975102 122975160 -159218504 + (TA)n Simple_repeat Simple_repeat 1 57 0 200 242 16 16 chr1 122976240 122976302 -159217362 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 315 0 0 0 chr1 122980563 122980580 -159213084 + (TG)n Simple_repeat Simple_repeat 1 52 0 315 0 0 0 chr1 122980580 122980615 -159213049 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr1 122986093 122986128 -159207536 + GC_rich Low_complexity Low_complexity 1 35 0 205 103 26 26 chr1 122986180 122986219 -159207445 + (CCGCG)n Simple_repeat Simple_repeat 4 42 0 34 0 0 0 chr1 122986245 122986279 -159207385 + GC_rich Low_complexity Low_complexity 1 34 0 278 238 167 0 chr1 122987559 122987643 -159206021 + MIR SINE MIR 92 146 -62 581 332 66 13 chr1 122988120 122988346 -159205318 - MIR SINE MIR -24 238 1 438 212 58 58 chr1 122988626 122988763 -159204901 + MIR SINE MIR 59 195 -67 459 328 97 15 chr1 122989242 122989437 -159204227 - MIR SINE MIR -39 223 13 203 273 121 0 chr1 122989690 122989756 -159203908 + MIR3 SINE MIR 82 155 -53 477 0 0 0 chr1 122989803 122989856 -159203808 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 1700 155 46 35 chr1 122990241 122990525 -159203139 + AluJo SINE Alu 11 297 -15 1716 199 3 6 chr1 122990525 122990836 -159202828 + AluJb SINE Alu 1 310 -2 1282 154 19 0 chr1 122990978 122991192 -159202472 - Tigger3(Golem) DNA MER2_type -1 3028 2811 512 338 99 36 chr1 122991195 122991588 -159202076 + L2 LINE L2 2423 2840 -474 526 303 52 11 chr1 122991640 122991853 -159201811 + MIR SINE MIR 10 224 -38 316 331 77 40 chr1 122991920 122992219 -159201445 + L2 LINE L2 2950 3259 -13 493 267 9 9 chr1 122992526 122992642 -159201022 - MIR SINE MIR -146 116 1 536 317 105 41 chr1 122992717 122993136 -159200528 - L3 LINE CR1 -94 1483 1038 410 250 89 24 chr1 122993350 122993474 -159200190 + MIR3 SINE MIR 54 185 -23 452 259 43 25 chr1 122993508 122993670 -159199994 - MIR SINE MIR -61 201 34 216 318 116 31 chr1 122993799 122993928 -159199736 + L3b LINE CR1 1238 1377 -206 309 342 40 27 chr1 122995419 122995568 -159198096 - MIR SINE MIR -97 165 15 193 219 0 0 chr1 122995597 122995638 -159198026 + L2 LINE L2 3261 3301 -12 300 239 159 0 chr1 122995937 122996025 -159197639 + L2 LINE L2 3208 3309 -4 294 297 94 65 chr1 122996033 122996837 -159196827 - L2 LINE L2 -338 2976 2149 1743 138 25 32 chr1 122996844 122997126 -159196538 + AluJo SINE Alu 1 280 -32 941 277 184 42 chr1 122997417 122998081 -159195583 + L2 LINE L2 2302 3047 -266 552 53 0 0 chr1 122998819 122998895 -159194769 + (GA)n Simple_repeat Simple_repeat 1 76 0 180 77 0 0 chr1 122999322 122999348 -159194316 + (CAGGG)n Simple_repeat Simple_repeat 2 27 0 6947 236 46 22 chr1 123000169 123002347 -159191317 + L1ME1 LINE L1 3013 5241 -905 866 165 0 0 chr1 123002353 123002480 -159191184 - FLAM_C SINE Alu -16 127 1 2849 200 70 56 chr1 123002513 123003408 -159190256 + L1ME1 LINE L1 5254 6161 -5 256 295 155 30 chr1 123003761 123003961 -159189703 + L2 LINE L2 2445 2669 -645 2471 275 67 26 chr1 123004023 123005393 -159188271 + L1MC4a LINE L1 4741 5394 -752 183 80 0 0 chr1 123005725 123005750 -159187914 + (ATG)n Simple_repeat Simple_repeat 2 26 0 418 256 73 15 chr1 123005757 123005894 -159187770 - MIR SINE MIR -14 248 104 656 311 36 5 chr1 123005932 123006151 -159187513 + MIR SINE MIR 32 257 -5 220 216 0 0 chr1 123006384 123006421 -159187243 + L2 LINE L2 3226 3262 -10 641 142 9 0 chr1 123006531 123006637 -159187027 + FRAM SINE Alu 63 169 -7 321 236 21 129 chr1 123007300 123007440 -159186224 + L2 LINE L2 3142 3266 -6 528 279 14 14 chr1 123007859 123007999 -159185665 + MER5B DNA MER1_type 2 141 -37 251 340 178 11 chr1 123008323 123008508 -159185156 + L2 LINE L2 3054 3269 -3 2599 64 0 16 chr1 123008795 123009106 -159184558 - AluSp SINE Alu -7 306 1 327 210 32 0 chr1 123009235 123009297 -159184367 + L2 LINE L2 3194 3257 -15 215 361 105 8 chr1 123009321 123009454 -159184210 + MIR SINE MIR 117 262 0 856 268 315 40 chr1 123010517 123011597 -159182067 - L2 LINE L2 -419 2895 1519 2300 121 0 0 chr1 123011598 123011905 -159181759 - AluSq SINE Alu -6 307 1 248 268 49 37 chr1 123012913 123012995 -159180669 + MIR3 SINE MIR 77 159 -49 315 308 267 0 chr1 123014598 123014793 -159178871 + L3 LINE CR1 1119 1365 -212 196 211 0 0 chr1 123014822 123014860 -159178804 + MIR SINE MIR 1 38 -224 489 330 33 41 chr1 123014945 123015215 -159178449 + MER102b DNA MER1_type 73 340 -1 452 274 8 8 chr1 123015229 123015346 -159178318 + MIR SINE MIR 47 163 -99 1497 162 29 71 chr1 123015651 123015768 -159177896 + AluJb SINE Alu 1 121 -191 195 69 0 0 chr1 123015768 123015797 -159177867 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 1497 162 29 71 chr1 123015797 123015988 -159177676 + AluJb SINE Alu 121 296 -16 205 29 29 29 chr1 123016002 123016037 -159177627 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 982 233 48 12 chr1 123017930 123018179 -159175485 + MIR SINE MIR 5 262 0 186 280 30 70 chr1 123018589 123018689 -159174975 - L2 LINE L2 -321 2951 2856 378 327 91 30 chr1 123018881 123019312 -159174352 - L2 LINE L2 -867 2447 1991 2284 114 0 0 chr1 123019577 123019885 -159173779 + AluSg SINE Alu 3 310 0 342 256 62 109 chr1 123020144 123020355 -159173309 + MIR SINE MIR 61 261 -1 303 49 0 0 chr1 123020549 123020590 -159173074 + (TG)n Simple_repeat Simple_repeat 2 42 0 2173 114 14 0 chr1 123021048 123021338 -159172326 - AluSx SINE Alu -18 294 1 223 229 0 0 chr1 123022061 123022109 -159171555 + C-rich Low_complexity Low_complexity 1 48 0 1788 113 0 79 chr1 123023293 123023585 -159170079 + AluSx SINE Alu 29 297 -15 257 288 14 0 chr1 123023586 123023659 -159170005 + MIR SINE MIR 152 225 -37 604 219 174 13 chr1 123024042 123024197 -159169467 - MER5A DNA MER1_type -1 188 9 180 0 0 0 chr1 123024430 123024450 -159169214 + (TTTTTA)n Simple_repeat Simple_repeat 5 24 0 461 318 81 71 chr1 123026844 123027442 -159166222 - L2 LINE L2 -2 3270 2670 391 311 232 14 chr1 123028295 123028735 -159164929 - L2 LINE L2 -1035 2279 1744 344 295 68 18 chr1 123029198 123029352 -159164312 + MIR3 SINE MIR 2 160 -67 2121 121 3 0 chr1 123030762 123031081 -159162583 + AluSx SINE Alu 1 320 0 351 0 0 0 chr1 123031731 123031770 -159161894 + (TG)n Simple_repeat Simple_repeat 2 40 0 204 217 0 0 chr1 123031780 123031826 -159161838 + (TA)n Simple_repeat Simple_repeat 2 47 0 195 310 17 0 chr1 123031884 123031942 -159161722 + L2 LINE L2 3250 3308 -5 266 89 44 0 chr1 123032260 123032305 -159161359 + GA-rich Low_complexity Low_complexity 3 49 0 261 374 32 0 chr1 123033604 123033727 -159159937 + MIR SINE MIR 69 195 -67 237 229 0 0 chr1 123033915 123033963 -159159701 + (TATG)n Simple_repeat Simple_repeat 3 50 0 318 293 80 27 chr1 123035257 123035407 -159158257 - MIR3 SINE MIR -10 198 41 2213 121 0 7 chr1 123035821 123036127 -159157537 - AluSg SINE Alu -6 304 1 358 309 8 40 chr1 123036164 123036290 -159157374 - MIR3 SINE MIR -15 193 72 3220 63 24 31 chr1 123038457 123038882 -159154782 + L1PA6 LINE L1 5733 6154 0 210 71 0 0 chr1 123039282 123039310 -159154354 + (GA)n Simple_repeat Simple_repeat 1 28 0 284 263 92 0 chr1 123039608 123039684 -159153980 + L2 LINE L2 3231 3313 0 308 290 0 0 chr1 123039686 123039755 -159153909 + L2 LINE L2 3204 3272 0 2466 55 0 19 chr1 123040606 123040917 -159152747 + AluY SINE Alu 1 305 -6 24 0 0 0 chr1 123042686 123042710 -159150954 + AT_rich Low_complexity Low_complexity 1 24 0 3732 245 106 18 chr1 123043404 123044761 -159148903 - L2 LINE L2 -9 3304 1816 189 235 161 25 chr1 123044757 123044838 -159148826 - L2 LINE L2 -64 3249 3158 * 470 241 82 41 chr1 123044868 123045038 -159148626 + MER104 DNA MER2_type 1 177 -3 654 335 55 30 chr1 123045204 123045604 -159148060 - L2 LINE L2 -414 2900 2491 395 318 47 20 chr1 123048414 123048562 -159145102 + MIR SINE MIR 23 174 -88 875 222 88 5 chr1 123048757 123048951 -159144713 - MIR SINE MIR -46 216 7 184 213 43 21 chr1 123048986 123049033 -159144631 - L2 LINE L2 -3 3310 3263 26 0 0 0 chr1 123054105 123054131 -159139533 + GC_rich Low_complexity Low_complexity 1 26 0 226 358 41 24 chr1 123055027 123055150 -159138514 + L2 LINE L2 3144 3268 -4 441 299 26 8 chr1 123055898 123056015 -159137649 - MIR3 SINE MIR -85 123 5 205 186 86 57 chr1 123056286 123056356 -159137308 - MIR SINE MIR -45 217 146 6227 67 23 3 chr1 123056687 123057704 -159135960 - L1PA7 LINE L1 -609 5545 4512 5153 58 8 0 chr1 123057704 123058304 -159135360 + L1PA7 LINE L1 5544 6154 0 336 252 81 27 chr1 123058305 123058416 -159135248 - L2 LINE L2 -26 3287 3171 1053 239 43 80 chr1 123058493 123058932 -159134732 + L2 LINE L2 2868 3290 -23 306 0 0 0 chr1 123058985 123059019 -159134645 + (TG)n Simple_repeat Simple_repeat 1 34 0 490 337 165 14 chr1 123059163 123059576 -159134088 + L2 LINE L2 2260 2734 -580 267 302 85 58 chr1 123059624 123059813 -159133851 + L2 LINE L2 2877 3070 -202 610 235 63 99 chr1 123059982 123060203 -159133461 - MIR SINE MIR -2 260 48 2113 139 0 3 chr1 123060634 123060944 -159132720 + AluSx SINE Alu 1 309 -3 4514 153 32 29 chr1 123062986 123063714 -159129950 - MER44D DNA MER2_type -3 602 1 376 325 50 6 chr1 123063729 123063889 -159129775 + MIR SINE MIR 86 252 -10 1952 143 20 7 chr1 123064154 123064455 -159129209 - AluSq SINE Alu -8 305 1 188 267 0 0 chr1 123064490 123064535 -159129129 + L2 LINE L2 3264 3308 -5 * 335 359 13 39 chr1 123064525 123064681 -159128983 - MIR3 SINE MIR -26 182 31 240 319 55 11 chr1 123066552 123066643 -159127021 + L2 LINE L2 3168 3262 -10 21 95 0 0 chr1 123068338 123068401 -159125263 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr1 123068628 123068650 -159125014 + AT_rich Low_complexity Low_complexity 1 22 0 9328 107 18 3 chr1 123069187 123070465 -159123199 + HSMAR2 DNA Mariner 5 1301 -1 23 33 0 0 chr1 123070481 123070511 -159123153 + AT_rich Low_complexity Low_complexity 1 30 0 449 277 39 8 chr1 123070859 123070989 -159122675 + MIR SINE MIR 99 232 -30 219 95 16 0 chr1 123073613 123073652 -159120012 - MIR SINE MIR -110 152 114 454 301 8 8 chr1 123073842 123073965 -159119699 + MER5B DNA MER1_type 4 126 -52 415 255 80 21 chr1 123074646 123074834 -159118830 + L1ME4a LINE L1 5707 5905 -216 314 236 57 29 chr1 123074837 123074977 -159118687 + L1ME4a LINE L1 5975 6118 -3 603 336 88 24 chr1 123075236 123075913 -159117751 - L2 LINE L2 -3 3269 2554 418 293 177 0 chr1 123076372 123076553 -159117111 + MIR SINE MIR 20 232 -30 1866 152 10 13 chr1 123076565 123076874 -159116790 + AluSx SINE Alu 1 308 -4 367 344 8 0 chr1 123076900 123077025 -159116639 + L3 LINE CR1 1046 1171 -406 403 337 59 11 chr1 123077246 123077516 -159116148 + L3 LINE CR1 1170 1452 -125 3773 164 42 9 chr1 123077534 123078777 -159114887 + L1MA9 LINE L1 4614 5904 -408 1378 144 128 34 chr1 123078781 123079079 -159114585 + L1MA9 LINE L1 5980 6305 -7 295 202 90 11 chr1 123079669 123079758 -159113906 - MLT1J2 LTR MaLR 0 450 355 388 248 52 60 chr1 123079763 123079972 -159113692 - MLT1I LTR MaLR -140 310 71 301 312 21 0 chr1 123080016 123080109 -159113555 - MIR3 SINE MIR -110 98 4 2201 131 21 51 chr1 123082276 123082651 -159111013 - THE1B LTR MaLR 0 364 1 12782 86 7 0 chr1 123082651 123084220 -159109444 - THE1B-int LTR MaLR 0 1580 1 1979 144 18 85 chr1 123084220 123084262 -159109402 - THE1B LTR MaLR 0 364 321 207 0 0 0 chr1 123084262 123084285 -159109379 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1979 144 18 85 chr1 123084285 123084632 -159109032 - THE1B LTR MaLR -43 321 1 243 266 242 8 chr1 123085047 123085175 -159108489 - MIR3 SINE MIR -34 174 17 400 263 20 0 chr1 123086489 123086588 -159107076 - L2 LINE L2 -4 3309 3209 1649 257 43 36 chr1 123087016 123087083 -159106581 - L2 LINE L2 -2 3311 3246 2156 143 0 0 chr1 123087083 123087391 -159106273 - AluSx SINE Alu -4 308 1 1649 257 43 36 chr1 123087391 123088079 -159105585 - L2 LINE L2 -67 3246 2553 197 261 0 0 chr1 123088813 123088859 -159104805 + MIR SINE MIR 161 206 -56 319 244 71 39 chr1 123088981 123089108 -159104556 - L2 LINE L2 -4 3309 3179 182 291 0 0 chr1 123089278 123089333 -159104331 - L2 LINE L2 0 3272 3218 2308 64 0 3 chr1 123089520 123089838 -159103826 - AluY SINE Alu 0 317 1 1888 174 82 22 chr1 123089862 123090230 -159103434 - MLT1B LTR MaLR 0 390 1 286 328 69 23 chr1 123090295 123090426 -159103238 + L2 LINE L2 2956 3092 -180 579 254 151 5 chr1 123091251 123091436 -159102228 + MIR SINE MIR 8 219 -43 506 332 87 13 chr1 123091680 123092056 -159101608 + L2 LINE L2 2550 3025 -288 575 291 113 22 chr1 123092062 123092292 -159101372 + MIR SINE MIR 2 252 -10 291 360 70 25 chr1 123092431 123092631 -159101033 + L2 LINE L2 3104 3312 -1 305 336 82 0 chr1 123092631 123092753 -159100911 + MIR SINE MIR 47 178 -84 340 194 89 40 chr1 123092758 123092882 -159100782 + L1ME4a LINE L1 5984 6113 -8 185 349 0 0 chr1 123092892 123092955 -159100709 + MIR SINE MIR 186 248 -14 261 146 0 0 chr1 123094203 123094251 -159099413 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 511 278 85 6 chr1 123094363 123094539 -159099125 + MIR SINE MIR 73 262 0 833 244 20 15 chr1 123095223 123095424 -159098240 - MIR SINE MIR 0 262 61 244 356 67 22 chr1 123095468 123095603 -159098061 - L2 LINE L2 -7 3265 3125 180 270 0 0 chr1 123095605 123095642 -159098022 - MIR SINE MIR -195 67 31 207 313 65 65 chr1 123096735 123097013 -159096651 + L2 LINE L2 2544 2821 -493 793 269 173 35 chr1 123097916 123098344 -159095320 + LTR33A LTR ERVL 27 513 -10 198 258 165 41 chr1 123099234 123099331 -159094333 - MIR SINE MIR -108 154 46 274 210 48 0 chr1 123100527 123100589 -159093075 - MIR3 SINE MIR -42 166 102 186 312 226 30 chr1 123100628 123100965 -159092699 - L2 LINE L2 -1059 2255 1853 288 174 36 24 chr1 123100984 123101162 -159092502 + (TG)n Simple_repeat Simple_repeat 1 180 0 241 216 39 52 chr1 123101174 123101327 -159092337 + (TG)n Simple_repeat Simple_repeat 2 152 0 4823 162 24 8 chr1 123101538 123102361 -159091303 + MER45B DNA AcHobo 205 1040 0 593 299 80 10 chr1 123103170 123103371 -159090293 + MIR SINE MIR 34 248 -14 2400 61 0 35 chr1 123103574 123103884 -159089780 + AluY SINE Alu 1 299 -12 308 230 96 80 chr1 123103959 123104146 -159089518 - L1ME4a LINE L1 -2 6119 5930 263 343 152 0 chr1 123104417 123104516 -159089148 - L2 LINE L2 -20 3252 3139 261 301 113 52 chr1 123104860 123105215 -159088449 - L2 LINE L2 -173 3099 2713 1111 293 122 30 chr1 123105219 123105857 -159087807 - L2 LINE L2 -1011 2303 1607 224 297 14 14 chr1 123107119 123107193 -159086471 + L2 LINE L2 3240 3313 0 282 208 42 14 chr1 123107238 123107310 -159086354 - L2 LINE L2 -4 3309 3236 1533 266 92 26 chr1 123107320 123107344 -159086320 + LTR16C LTR ERVL 1 22 -469 4906 100 15 46 chr1 123107344 123107873 -159085791 - LTR8 LTR ERV1 0 691 188 1579 144 126 11 chr1 123107873 123108150 -159085514 + AluSg1 SINE Alu 1 309 0 4906 100 15 46 chr1 123108150 123108333 -159085331 - LTR8 LTR ERV1 -503 188 1 1533 266 92 26 chr1 123108333 123108390 -159085274 + LTR16C LTR ERVL 22 74 -417 2808 213 73 67 chr1 123108390 123109211 -159084453 + LTR1B LTR ERV1 1 826 0 1533 266 92 26 chr1 123109211 123109587 -159084077 + LTR16C LTR ERVL 74 489 -2 2075 215 47 11 chr1 123109769 123110220 -159083444 + MLT1C LTR MaLR 1 467 0 1667 181 51 27 chr1 123110605 123110941 -159082723 - MER2 DNA MER2_type 0 344 1 458 281 202 0 chr1 123111942 123112120 -159081544 - MIR SINE MIR 0 262 49 183 80 0 0 chr1 123113899 123113924 -159079740 + (ATG)n Simple_repeat Simple_repeat 2 26 0 195 303 225 0 chr1 123113985 123114074 -159079590 + L2 LINE L2 3145 3253 -19 328 336 62 34 chr1 123114083 123114375 -159079289 - L2 LINE L2 -17 3255 2956 184 294 20 0 chr1 123115040 123115091 -159078573 + MIR SINE MIR 81 132 -76 2296 80 0 3 chr1 123117577 123117877 -159075787 - AluY SINE Alu -12 299 1 211 236 18 36 chr1 123117912 123117967 -159075697 - MER5A DNA MER1_type -88 101 48 1002 194 0 47 chr1 123117992 123118183 -159075481 - MER58A DNA MER1_type -17 207 26 258 298 58 48 chr1 123118819 123118923 -159074741 + MIR SINE MIR 2 106 -156 1606 175 30 21 chr1 123118942 123119274 -159074390 + L1MA6 LINE L1 5960 6294 -6 23 0 0 0 chr1 123119283 123119306 -159074358 + AT_rich Low_complexity Low_complexity 1 23 0 335 261 104 101 chr1 123119310 123119655 -159074009 - L1ME4a LINE L1 -4 6117 5772 415 266 11 0 chr1 123119675 123119769 -159073895 + MIR SINE MIR 100 194 -68 2161 105 3 6 chr1 123119784 123120097 -159073567 - AluSp SINE Alu -1 312 1 1820 48 18 0 chr1 123120424 123120652 -159073012 - L1PA5 LINE L1 -1 6153 5922 403 315 159 11 chr1 123120760 123121002 -159072662 + MIR SINE MIR 2 261 -1 3242 158 32 80 chr1 123121133 123121859 -159071805 - LTR8 LTR ERV1 0 691 1 267 337 137 20 chr1 123121981 123122230 -159071434 + L3 LINE CR1 1296 1573 -4 1655 188 80 71 chr1 123122391 123122854 -159070810 + MLT1C LTR MaLR 1 467 0 291 54 0 0 chr1 123123138 123123175 -159070489 + (GA)n Simple_repeat Simple_repeat 1 37 0 271 268 155 10 chr1 123123548 123123645 -159070019 - L2 LINE L2 -4 3309 3199 707 253 48 12 chr1 123123701 123123867 -159069797 - MER5B DNA MER1_type -5 173 2 291 278 10 72 chr1 123124119 123124216 -159069448 - MIR SINE MIR -92 116 26 1521 95 0 43 chr1 123124734 123124965 -159068699 + AluSg/x SINE Alu 77 297 -13 197 333 188 0 chr1 123124998 123125094 -159068570 - L2 LINE L2 0 3272 3159 21 36 0 0 chr1 123125476 123125504 -159068160 + AT_rich Low_complexity Low_complexity 1 28 0 1357 181 21 14 chr1 123125640 123125927 -159067737 - AluJo SINE Alu -22 290 2 372 281 59 13 chr1 123125949 123126102 -159067562 - L1ME4a LINE L1 -188 5933 5774 729 198 0 0 chr1 123126110 123126236 -159067428 - AluJb SINE Alu -55 257 132 1721 139 0 0 chr1 123176260 123176497 -159017167 - AluSx SINE Alu -75 237 1 1518 268 45 12 chr1 123176499 123177185 -159016479 - L2 LINE L2 -44 3269 2553 186 261 0 0 chr1 123177921 123177967 -159015697 + MIR SINE MIR 161 206 -56 282 244 71 39 chr1 123178089 123178216 -159015448 - L2 LINE L2 -4 3309 3179 2342 64 0 3 chr1 123178628 123178951 -159014713 - AluY SINE Alu 0 322 1 1766 174 82 22 chr1 123178975 123179343 -159014321 - MLT1B LTR MaLR 0 390 1 244 328 69 23 chr1 123179408 123179539 -159014125 + L2 LINE L2 2956 3092 -180 526 254 151 5 chr1 123180363 123180548 -159013116 + MIR SINE MIR 8 219 -43 439 332 87 13 chr1 123180792 123181168 -159012496 + L2 LINE L2 2550 3025 -288 511 296 113 22 chr1 123181174 123181404 -159012260 + MIR SINE MIR 2 252 -10 246 360 70 25 chr1 123181543 123181743 -159011921 + L2 LINE L2 3104 3312 -1 272 336 82 0 chr1 123181743 123181865 -159011799 + MIR SINE MIR 47 178 -84 313 202 89 40 chr1 123181870 123181994 -159011670 + L1ME4a LINE L1 5984 6113 -8 261 146 0 0 chr1 123183315 123183363 -159010301 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 459 278 85 6 chr1 123183475 123183651 -159010013 + MIR SINE MIR 73 262 0 772 244 20 15 chr1 123184335 123184536 -159009128 - MIR SINE MIR 0 262 61 205 370 59 15 chr1 123184580 123184715 -159008949 - L2 LINE L2 -7 3265 3125 810 257 180 42 chr1 123187028 123187456 -159006208 + LTR33A LTR ERVL 27 513 -10 253 210 48 0 chr1 123189639 123189701 -159003963 - MIR3 SINE MIR -42 166 102 288 182 40 39 chr1 123190096 123190440 -159003224 + (TG)n Simple_repeat Simple_repeat 1 344 0 4791 162 24 8 chr1 123190651 123191474 -159002190 + MER45B DNA AcHobo 205 1040 0 539 289 90 2 chr1 123192284 123192484 -159001180 + MIR SINE MIR 36 248 -14 2424 61 0 35 chr1 123192687 123192997 -159000667 + AluY SINE Alu 1 299 -12 228 291 51 13 chr1 123193550 123193629 -159000035 - L2 LINE L2 -52 3220 3139 218 290 63 59 chr1 123194018 123194239 -158999425 - L2 LINE L2 -224 3048 2827 945 295 124 27 chr1 123194339 123194970 -158998694 - L2 LINE L2 -1016 2298 1607 202 314 14 0 chr1 123196236 123196306 -158997358 + L2 LINE L2 3243 3313 0 255 203 16 16 chr1 123196351 123196415 -158997249 - L2 LINE L2 -4 3309 3246 1544 266 92 26 chr1 123196433 123196457 -158997207 + LTR16C LTR ERVL 1 22 -469 4634 100 17 44 chr1 123196457 123196985 -158996679 - LTR8 LTR ERV1 0 691 185 1535 148 130 11 chr1 123196985 123197255 -158996409 + AluSg1 SINE Alu 1 302 -7 4634 100 17 44 chr1 123197255 123197436 -158996228 - LTR8 LTR ERV1 -506 185 1 1544 266 92 26 chr1 123197436 123197493 -158996171 + LTR16C LTR ERVL 22 74 -417 2608 212 73 67 chr1 123197493 123198314 -158995350 + LTR1B LTR ERV1 1 826 0 1544 266 92 26 chr1 123198314 123198690 -158994974 + LTR16C LTR ERVL 74 489 -2 2023 206 24 12 chr1 123198910 123199323 -158994341 + MLT1C LTR MaLR 50 467 0 1517 182 54 27 chr1 123199708 123200043 -158993621 - MER2 DNA MER2_type 0 344 1 407 281 202 0 chr1 123201044 123201222 -158992442 - MIR SINE MIR 0 262 49 183 80 0 0 chr1 123203001 123203026 -158990638 + (ATG)n Simple_repeat Simple_repeat 2 26 0 235 336 62 34 chr1 123203185 123203477 -158990187 - L2 LINE L2 -17 3255 2956 2427 80 0 3 chr1 123206678 123206978 -158986686 - AluY SINE Alu -12 299 1 188 236 18 36 chr1 123207013 123207068 -158986596 - MER5A DNA MER1_type -88 101 48 1001 194 0 47 chr1 123207093 123207284 -158986380 - MER58A DNA MER1_type -17 207 26 222 298 58 48 chr1 123207920 123208024 -158985640 + MIR SINE MIR 2 106 -156 1628 175 30 21 chr1 123208043 123208375 -158985289 + L1MA6 LINE L1 5960 6294 -6 23 0 0 0 chr1 123208384 123208407 -158985257 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr1 123208445 123208490 -158985174 + AT_rich Low_complexity Low_complexity 1 45 0 375 266 11 0 chr1 123208776 123208870 -158984794 + MIR SINE MIR 100 194 -68 2265 112 3 6 chr1 123208885 123209199 -158984465 - AluSp SINE Alu 0 313 1 1822 48 18 0 chr1 123209526 123209754 -158983910 - L1PA5 LINE L1 -1 6153 5922 315 326 106 9 chr1 123209878 123210091 -158983573 + MIR SINE MIR 21 250 -12 3213 161 32 80 chr1 123210235 123210961 -158982703 - LTR8 LTR ERV1 0 691 1 1660 188 80 71 chr1 123211493 123211956 -158981708 + MLT1C LTR MaLR 1 467 0 309 51 0 0 chr1 123212240 123212279 -158981385 + (GA)n Simple_repeat Simple_repeat 1 39 0 243 200 0 18 chr1 123212652 123212707 -158980957 - L2 LINE L2 -4 3309 3256 639 253 48 12 chr1 123212805 123212971 -158980693 - MER5B DNA MER1_type -5 173 2 259 278 10 72 chr1 123213223 123213320 -158980344 - MIR SINE MIR -92 116 26 1599 99 0 43 chr1 123213837 123214070 -158979594 + AluSg/x SINE Alu 79 301 -11 223 317 173 0 chr1 123214103 123214207 -158979457 - L2 LINE L2 0 3272 3151 259 234 57 65 chr1 123215529 123215739 -158977925 - MIR3 SINE MIR -42 220 15 25 31 0 0 chr1 123216023 123216055 -158977609 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr1 123216677 123216703 -158976961 + AT_rich Low_complexity Low_complexity 1 26 0 798 349 62 33 chr1 123216816 123217459 -158976205 - L2 LINE L2 -181 3091 2440 238 373 40 40 chr1 123219206 123219332 -158974332 + MER5A DNA MER1_type 64 189 0 244 348 51 14 chr1 123219973 123220111 -158973553 + L2 LINE L2 2936 3078 -194 215 121 0 0 chr1 123220312 123220345 -158973319 + L2 LINE L2 3235 3267 -5 22 0 0 0 chr1 123220501 123220523 -158973141 + AT_rich Low_complexity Low_complexity 1 22 0 2389 78 0 0 chr1 123220523 123220829 -158972835 - L1PA5 LINE L1 0 6154 5849 284 155 86 0 chr1 123221342 123221400 -158972264 - AluSp/q SINE Alu -60 243 181 2029 69 19 0 chr1 123221400 123221660 -158972004 - AluSc SINE Alu -44 265 1 413 228 202 0 chr1 123221661 123221775 -158971889 + MER5A DNA MER1_type 51 187 -2 753 202 48 77 chr1 123222373 123222581 -158971083 - L1ME2 LINE L1 -10 6154 5953 * 2674 222 94 34 chr1 123222553 123223744 -158969920 - L1ME2 LINE L1 -592 5570 4307 1823 256 46 19 chr1 123223746 123224336 -158969328 - L1ME2 LINE L1 -2295 3851 3246 1290 278 96 12 chr1 123224348 123224858 -158968806 - MLT1F1 LTR MaLR -14 553 1 760 232 37 20 chr1 123224859 123225105 -158968559 - L1ME2 LINE L1 -2897 3249 3000 598 170 19 226 chr1 123225232 123225502 -158968162 + MIR SINE MIR 5 218 -44 182 315 14 0 chr1 123225732 123225805 -158967859 - MIR SINE MIR -16 246 173 458 294 0 9 chr1 123226028 123226137 -158967527 + MIR SINE MIR 1 108 -154 448 266 16 8 chr1 123226154 123226278 -158967386 - L2 LINE L2 -1 3312 3188 234 253 13 27 chr1 123226286 123226361 -158967303 + MIR SINE MIR 159 232 -30 327 384 34 23 chr1 123226942 123227119 -158966545 + L2 LINE L2 3086 3264 -8 365 257 174 0 chr1 123227746 123227855 -158965809 - L2 LINE L2 -6 3307 3180 181 330 53 11 chr1 123228220 123228314 -158965350 + MIR SINE MIR 149 246 -16 268 203 0 62 chr1 123228768 123228832 -158964832 + L2 LINE L2 3213 3272 0 401 248 74 110 chr1 123228911 123229210 -158964454 + L2 LINE L2 2970 3257 -15 245 347 145 8 chr1 123229272 123229396 -158964268 - L2 LINE L2 -9 3263 3123 224 381 76 9 chr1 123229654 123229759 -158963905 + L2 LINE L2 3152 3263 -9 2435 74 0 0 chr1 123230089 123230386 -158963278 + AluY SINE Alu 1 297 -14 2255 267 117 88 chr1 123230502 123230648 -158963016 + HAL1 LINE L1 179 319 -2188 1898 186 11 27 chr1 123230648 123231019 -158962645 - MLT1A1 LTR MaLR 0 365 1 2255 267 117 88 chr1 123231019 123232298 -158961366 + HAL1 LINE L1 319 1665 -842 787 62 31 0 chr1 123232298 123232394 -158961270 - HY3 scRNA scRNA -2 99 1 2255 267 117 88 chr1 123232394 123232702 -158960962 + HAL1 LINE L1 1665 1963 -544 2016 190 47 3 chr1 123232738 123233122 -158960542 - MER57A LTR ERV1 0 403 3 562 120 11 0 chr1 123233209 123233301 -158960363 + L1PB4 LINE L1 6064 6156 0 885 246 63 68 chr1 123233341 123233633 -158960031 + HAL1 LINE L1 2092 2383 -124 417 283 29 36 chr1 123233633 123233771 -158959893 + MER91C DNA MER1_type 4 140 0 885 246 63 68 chr1 123233771 123233892 -158959772 + HAL1 LINE L1 2383 2503 -4 330 174 421 33 chr1 123234928 123235049 -158958615 - MIR SINE MIR 0 262 95 198 292 10 52 chr1 123235145 123235241 -158958423 + L2 LINE L2 2721 2812 -502 364 356 21 16 chr1 123235793 123235984 -158957680 + L2 LINE L2 2857 3048 -224 4385 153 29 30 chr1 123236578 123237110 -158956554 - L1MB3 LINE L1 -2 6181 5649 360 0 0 0 chr1 123237110 123237150 -158956514 + (TA)n Simple_repeat Simple_repeat 1 40 0 4385 153 29 30 chr1 123237150 123237416 -158956248 - L1MB3 LINE L1 -534 5649 5384 685 273 35 39 chr1 123238955 123239215 -158954449 + MIR SINE MIR 4 262 0 550 167 83 61 chr1 123239514 123239646 -158954018 + MER69A DNA AcHobo 42 176 -1 932 216 64 17 chr1 123240227 123240463 -158953201 + LTR16A LTR ERVL 204 450 0 1073 66 0 0 chr1 123240763 123240899 -158952765 - L1PA13 LINE L1 -1 6162 6027 3614 147 36 3 chr1 123241060 123241640 -158952024 + L1MB3 LINE L1 5583 6181 -2 800 36 0 82 chr1 123241685 123241880 -158951784 + (GA)n Simple_repeat Simple_repeat 2 180 0 316 100 0 20 chr1 123242665 123242715 -158950949 - L2 LINE L2 -3 3310 3262 246 267 9 95 chr1 123242726 123242792 -158950872 - MIR3 SINE MIR -32 176 121 900 201 77 5 chr1 123242792 123242863 -158950801 - MER3 DNA MER1_type -1 208 144 2264 106 0 3 chr1 123242863 123243164 -158950500 + AluSx SINE Alu 1 300 -12 900 201 77 5 chr1 123243164 123243286 -158950378 - MER3 DNA MER1_type -65 144 1 246 267 9 95 chr1 123243286 123243324 -158950340 - MIR3 SINE MIR -87 121 81 949 264 110 34 chr1 123243741 123244241 -158949423 + L2 LINE L2 2130 2667 -647 610 168 22 3 chr1 123244392 123244515 -158949149 + L1ME3 LINE L1 5988 6280 -54 667 230 128 5 chr1 123245257 123245461 -158948203 + MIR SINE MIR 6 234 -28 538 221 60 7 chr1 123245709 123245858 -158947806 + MIR3 SINE MIR 46 202 -6 313 318 64 9 chr1 123246239 123246349 -158947315 + MIR SINE MIR 35 150 -112 418 292 125 67 chr1 123246664 123247055 -158946609 - L2 LINE L2 -42 3230 2817 2270 102 0 0 chr1 123247152 123247446 -158946218 + AluSg SINE Alu 1 294 -16 275 315 42 14 chr1 123247957 123248100 -158945564 - MIR3 SINE MIR -61 147 1 1414 176 37 0 chr1 123249418 123249691 -158943973 + L1MA8 LINE L1 6006 6288 -3 585 241 37 6 chr1 123249698 123249860 -158943804 - MIR SINE MIR -1 261 95 830 244 35 39 chr1 123250315 123250573 -158943091 - MIR SINE MIR 0 262 6 839 235 22 0 chr1 123250773 123250956 -158942708 - MIR SINE MIR -74 188 2 1948 108 44 10 chr1 123251910 123252205 -158941459 + AluSx SINE Alu 1 305 -7 1036 197 0 6 chr1 123252610 123252812 -158940852 + AluJb SINE Alu 107 307 0 207 0 0 0 chr1 123252818 123252841 -158940823 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 320 107 8 chr1 123252907 123253029 -158940635 + MIR SINE MIR 68 201 -61 * 576 336 157 33 chr1 123253028 123253424 -158940240 - L2 LINE L2 -6 3266 2822 1029 166 143 5 chr1 123253536 123253753 -158939911 + LTR52 LTR ERVL 171 417 -4 512 313 60 6 chr1 123253758 123253940 -158939724 - MIR SINE MIR -70 192 1 321 255 71 49 chr1 123254755 123254956 -158938708 + L1MDa LINE L1 1234 1513 -1388 7555 191 39 42 chr1 123254977 123256519 -158937145 + L1M2a LINE L1 1 1537 -5631 4150 191 29 21 chr1 123256554 123256756 -158936908 + L1M2a LINE L1 2639 2838 -4329 752 223 8 0 chr1 123256756 123256886 -158936778 + FLAM_A SINE Alu 1 131 -2 4150 191 29 21 chr1 123256886 123258173 -158935491 + L1M2a LINE L1 2838 4143 -3024 476 279 60 79 chr1 123258480 123258585 -158935079 + L1MC/D LINE L1 5295 5400 -2408 619 241 183 18 chr1 123258585 123258809 -158934855 - MIR SINE MIR -1 261 1 476 279 60 79 chr1 123258809 123259019 -158934645 + L1MC/D LINE L1 5400 5604 -2204 195 208 0 42 chr1 123259529 123259577 -158934087 + L2 LINE L2 3268 3313 0 11064 203 24 56 chr1 123259658 123260598 -158933066 + L1PA16 LINE L1 2287 3256 -2910 1874 180 3 0 chr1 123260598 123260909 -158932755 + AluSx SINE Alu 1 312 0 11064 203 24 56 chr1 123260909 123261975 -158931689 + L1PA16 LINE L1 3256 4355 -1811 745 168 0 8 chr1 123261975 123262094 -158931570 + FLAM_C SINE Alu 2 119 -24 11064 203 24 56 chr1 123262094 123263270 -158930394 + L1PA16 LINE L1 4355 5467 -699 2022 78 0 57 chr1 123263270 123263551 -158930113 + AluSg SINE Alu 1 265 -45 11064 203 24 56 chr1 123263551 123263758 -158929906 + L1PA16 LINE L1 5467 5679 -487 6128 117 47 4 chr1 123263782 123264796 -158928868 - L1PA13 LINE L1 0 6163 5136 3128 147 20 8 chr1 123264796 123265291 -158928373 + L1PA16 LINE L1 5656 6157 -9 27 0 0 0 chr1 123267282 123267309 -158926355 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 123267917 123267938 -158925726 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 123268517 123268539 -158925125 + AT_rich Low_complexity Low_complexity 1 22 0 1228 264 79 28 chr1 123269048 123269696 -158923968 + L1M2a LINE L1 4705 5385 -1782 6585 189 29 21 chr1 123269715 123270721 -158922943 + L1MA9 LINE L1 3 1020 -4726 2069 128 0 0 chr1 123270721 123271017 -158922647 + AluSg1 SINE Alu 1 296 -13 6585 189 29 21 chr1 123271017 123271684 -158921980 + L1MA9 LINE L1 1020 1681 -4065 5578 137 29 3 chr1 123271687 123272800 -158920864 - L1PA15 LINE L1 -3 6162 5045 2381 179 74 8 chr1 123272800 123273275 -158920389 + L1PA15 LINE L1 4530 5035 -1111 4706 200 22 23 chr1 123273282 123274977 -158918687 + L1MA9 LINE L1 1676 3367 -2961 * 6180 22 1 0 chr1 123274973 123275703 -158917961 - L1P LINE L1 -1197 4949 4219 7736 20 0 0 chr1 123275703 123276903 -158916761 + L1PA3 LINE L1 4954 6154 -1 2223 138 20 136 chr1 123276903 123277504 -158916160 + L1MA9 LINE L1 3360 3891 -2437 1002 122 103 17 chr1 123277529 123277754 -158915910 + MLT2A2 LTR ERVL 293 453 0 4633 194 36 30 chr1 123277759 123278556 -158915108 + L1MA9 LINE L1 4533 5324 -1170 704 178 0 23 chr1 123278556 123278685 -158914979 + FLAM_A SINE Alu 2 127 -6 4633 194 36 30 chr1 123278685 123279298 -158914366 + L1MA9 LINE L1 5324 5959 -535 225 0 0 0 chr1 123279298 123279323 -158914341 + (CA)n Simple_repeat Simple_repeat 2 26 0 4633 194 36 30 chr1 123279323 123279824 -158913840 + L1MA9 LINE L1 5959 6456 -38 305 239 106 18 chr1 123279843 123279956 -158913708 + L1ME4a LINE L1 5828 5950 -214 1529 99 5 0 chr1 123280097 123280310 -158913354 - AluSg/x SINE Alu -12 298 85 307 386 171 7 chr1 123280418 123280827 -158912837 - L2 LINE L2 -337 2977 2502 1697 149 25 4 chr1 123281247 123281522 -158912142 - AluJo SINE Alu -31 281 1 261 211 0 0 chr1 123282188 123282240 -158911424 + L1ME4a LINE L1 5975 6026 -95 496 351 17 0 chr1 123282793 123282967 -158910697 - L2 LINE L2 -5 3267 3091 214 167 0 48 chr1 123282999 123283041 -158910623 + L2 LINE L2 3226 3265 -7 482 264 105 77 chr1 123283431 123283909 -158909755 + MLT1J LTR MaLR 21 511 0 271 246 15 0 chr1 123284076 123284141 -158909523 + MLT1J LTR MaLR 99 164 -347 1608 51 0 0 chr1 123284381 123284577 -158909087 + AluY SINE Alu 110 305 -6 379 266 47 135 chr1 123284820 123285139 -158908525 - MLT1H LTR MaLR -146 403 113 278 87 22 0 chr1 123285185 123285231 -158908433 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 15108 219 24 25 chr1 123285244 123287261 -158906403 - L1PA15 LINE L1 0 6816 4797 2172 116 7 0 chr1 123287261 123287553 -158906111 - AluSq SINE Alu -17 296 3 15108 219 24 25 chr1 123287553 123288792 -158904872 - L1PA15 LINE L1 -2019 4797 3557 7835 16 0 0 chr1 123288792 123289849 -158903815 - L1PA3 LINE L1 -1 6154 5098 15108 219 24 25 chr1 123289849 123292077 -158901587 - L1PA15 LINE L1 -3259 3557 1333 2007 301 64 30 chr1 123292063 123293027 -158900637 - L1PA15 LINE L1 -5790 997 1 * 440 334 85 42 chr1 123293327 123293680 -158899984 + L1MEd LINE L1 16 383 -5736 2421 147 15 17 chr1 123293759 123294465 -158899199 + L1MA7 LINE L1 4964 5669 -622 2973 173 24 25 chr1 123294512 123295142 -158898522 + L1MA7 LINE L1 5660 6288 -3 1192 214 57 36 chr1 123295184 123295520 -158898144 - MLT1C LTR MaLR -124 343 1 275 77 0 0 chr1 123295550 123295589 -158898075 + L1MB5 LINE L1 6128 6166 -8 662 270 73 80 chr1 123295616 123296657 -158897007 + L1MEd LINE L1 2113 3146 -2983 432 301 5 24 chr1 123296792 123297001 -158896663 + L1MEd LINE L1 4426 4630 -1499 1456 232 62 53 chr1 123297397 123298012 -158895652 - MER21B LTR ERV1 -88 775 98 432 245 10 10 chr1 123298048 123298146 -158895518 - MER21B LTR ERV1 -765 98 1 311 265 96 44 chr1 123298147 123298283 -158895381 + L1MEd LINE L1 1128 1270 -4935 2494 149 17 12 chr1 123298399 123298821 -158894843 - MSTB LTR MaLR 0 426 3 3191 186 51 24 chr1 123298872 123299614 -158894050 + L1MB8 LINE L1 5416 6177 -1 438 295 79 47 chr1 123299625 123299903 -158893761 + L1MEd LINE L1 2166 2452 -3944 347 250 42 0 chr1 123299904 123299976 -158893688 + Tigger3(Golem) DNA MER2_type 2 76 -2953 23 0 0 0 chr1 123300090 123300113 -158893551 + AT_rich Low_complexity Low_complexity 1 23 0 322 217 48 0 chr1 123300203 123300286 -158893378 - L1MA8 LINE L1 -18 6273 6187 1406 175 20 8 chr1 123300286 123300532 -158893132 + Tigger3(Golem) DNA MER2_type 2790 3038 0 234 261 59 64 chr1 123300547 123300750 -158892914 + L1MEd LINE L1 2436 2637 -3578 1661 167 6 27 chr1 123300759 123301094 -158892570 - L1MD1 LINE L1 0 6242 5915 7264 49 2 0 chr1 123301459 123302745 -158890919 - L1PA5 LINE L1 -3 6151 4865 7641 56 0 0 chr1 123302745 123303731 -158889933 + L1P LINE L1 2839 3824 -2322 3447 160 38 12 chr1 123304563 123305256 -158888408 - L1MD1 LINE L1 -307 5935 5226 1064 189 20 29 chr1 123305268 123305512 -158888152 - L1PA14 LINE L1 -2 6159 5918 2699 131 51 0 chr1 123305623 123306096 -158887568 - L1MA8 LINE L1 -18 6273 5777 1784 135 30 0 chr1 123306097 123306430 -158887234 + L1 LINE L1 4119 4461 -1685 5809 199 57 24 chr1 123306475 123308808 -158884856 + L1MB5 LINE L1 3761 6174 0 3407 176 35 46 chr1 123308812 123309588 -158884076 + L1MD1 LINE L1 5476 6242 0 22 35 0 0 chr1 123309656 123309685 -158883979 + AT_rich Low_complexity Low_complexity 1 29 0 273 80 66 75 chr1 123309719 123309802 -158883862 - L1MA7 LINE L1 -15 6276 6213 6029 136 33 10 chr1 123309826 123311479 -158882185 - L1MA6 LINE L1 -61 6239 4548 229 321 89 36 chr1 123311855 123311967 -158881697 + MIR SINE MIR 26 143 -119 509 312 48 0 chr1 123313037 123313223 -158880441 - L2 LINE L2 -14 3299 3105 6026 13 0 0 chr1 123313449 123314132 -158879532 - L1PA3 LINE L1 -2 6153 5471 1133 22 0 0 chr1 123314132 123314268 -158879396 + L1PA3 LINE L1 5339 5474 -681 304 317 25 33 chr1 123314826 123314946 -158878718 - L2 LINE L2 0 3272 3154 2197 113 3 10 chr1 123316874 123317176 -158876488 - AluSg SINE Alu -10 300 1 182 284 90 0 chr1 123318928 123318995 -158874669 - MIR SINE MIR -189 73 1 545 223 132 10 chr1 123319370 123319538 -158874126 + MIR SINE MIR 41 222 -40 315 0 0 0 chr1 123319918 123319953 -158873711 + (CA)n Simple_repeat Simple_repeat 1 35 0 2256 121 0 0 chr1 123320733 123321038 -158872626 + AluSx SINE Alu 1 305 -7 184 281 70 99 chr1 123321798 123322040 -158871624 - L3 LINE CR1 -294 1283 1049 475 309 14 22 chr1 123322949 123323088 -158870576 - L2 LINE L2 -1 3271 3134 4737 154 56 8 chr1 123323145 123324014 -158869650 + L1MC1 LINE L1 5423 6333 0 347 269 46 19 chr1 123324786 123324923 -158868741 + MIR SINE MIR 7 150 -68 2135 119 0 35 chr1 123324931 123325242 -158868422 - AluSx SINE Alu -12 300 1 2331 98 3 0 chr1 123325423 123325719 -158867945 - AluSp SINE Alu -16 297 1 2801 193 5 14 chr1 123325957 123326511 -158867153 + MER44D DNA MER2_type 2 605 0 2350 75 7 0 chr1 123327460 123327755 -158865909 + AluSc SINE Alu 2 298 -11 2240 56 3 0 chr1 123328290 123328576 -158865088 - L1PA5 LINE L1 -6 6148 5862 250 283 22 11 chr1 123328659 123328751 -158864913 + MIR3 SINE MIR 79 171 -37 264 331 136 0 chr1 123328762 123328916 -158864748 - MIR SINE MIR 0 262 88 207 100 0 0 chr1 123329005 123329035 -158864629 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1114 131 0 21 chr1 123329037 123329228 -158864436 + L1PA13 LINE L1 1616 1802 -4985 254 195 12 0 chr1 123329228 123329310 -158864354 + (TA)n Simple_repeat Simple_repeat 2 84 0 6446 178 26 12 chr1 123329570 123331686 -158861978 - L1PA14 LINE L1 -3 6158 4027 16549 206 14 9 chr1 123332039 123337519 -158856145 + L1PA15 LINE L1 1285 6808 -8 380 300 139 70 chr1 123338521 123338808 -158854856 - L2 LINE L2 -14 3258 2952 715 314 118 24 chr1 123338913 123339455 -158854209 - L2 LINE L2 -562 2752 2160 320 0 25 0 chr1 123339604 123339644 -158854020 + (CA)n Simple_repeat Simple_repeat 2 42 0 375 165 207 16 chr1 123339644 123339765 -158853899 - MER103 DNA DNA -1 165 22 200 271 177 10 chr1 123339864 123339960 -158853704 - MIR3 SINE MIR -36 172 61 415 315 46 0 chr1 123340080 123340210 -158853454 + MIR SINE MIR 47 182 -80 372 260 64 45 chr1 123340193 123340350 -158853314 - MIR3 SINE MIR -81 127 1 * 356 255 41 55 chr1 123340517 123340662 -158853002 + MER5A DNA MER1_type 47 189 0 194 276 138 35 chr1 123343991 123344078 -158849586 - MIR SINE MIR -97 111 16 1777 201 126 12 chr1 123344579 123345096 -158848568 - L1MC4 LINE L1 -18 8024 7449 205 269 19 0 chr1 123345391 123345443 -158848221 + CT-rich Low_complexity Low_complexity 2 54 0 331 297 143 29 chr1 123345807 123345982 -158847682 + MIR SINE MIR 20 214 -48 451 204 0 66 chr1 123346211 123346348 -158847316 + HAL1b LINE L1 1188 1315 -33 205 186 0 0 chr1 123346793 123346836 -158846828 + T-rich Low_complexity Low_complexity 1 43 0 584 257 78 11 chr1 123347039 123347218 -158846446 - MIR SINE MIR -64 198 8 236 171 0 0 chr1 123347301 123347342 -158846322 - MER103 DNA DNA -49 117 77 23 33 0 0 chr1 123347510 123347540 -158846124 + AT_rich Low_complexity Low_complexity 1 30 0 730 178 0 0 chr1 123347540 123347658 -158846006 - FLAM_C SINE Alu -15 118 1 291 337 109 23 chr1 123348308 123348483 -158845181 - MIR3 SINE MIR -3 205 16 269 279 88 0 chr1 123348507 123348575 -158845089 - L2 LINE L2 -56 3257 3184 8268 234 68 27 chr1 123349004 123353059 -158840605 - L1ME1 LINE L1 -121 6114 2226 2308 53 40 13 chr1 123353059 123353362 -158840302 + AluY SINE Alu 1 311 0 8268 234 68 27 chr1 123353362 123353376 -158840288 - L1ME1 LINE L1 -4009 2226 2214 2278 101 0 3 chr1 123353376 123353673 -158839991 + AluSx SINE Alu 6 301 -11 8268 234 68 27 chr1 123353673 123354357 -158839307 - L1ME1 LINE L1 -4021 2214 1559 2005 119 14 0 chr1 123354357 123354635 -158839029 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr1 123354637 123354661 -158839003 + (TA)n Simple_repeat Simple_repeat 2 25 0 8268 234 68 27 chr1 123354661 123354729 -158838935 - L1ME1 LINE L1 -4676 1559 1107 5452 118 13 3 chr1 123354829 123355726 -158837938 + L1PA13 LINE L1 5258 6163 0 872 237 39 59 chr1 123356354 123356691 -158836973 + L1MEc LINE L1 54 383 -6013 2045 250 36 17 chr1 123356734 123357258 -158836406 - MLT2B3 LTR ERVL -20 534 1 1061 245 208 9 chr1 123357265 123357817 -158835847 + L1MEc LINE L1 411 1072 -5324 2211 118 0 3 chr1 123357890 123358194 -158835470 - AluSq SINE Alu -10 303 1 2610 40 7 0 chr1 123358589 123358891 -158834773 + AluY SINE Alu 1 304 -7 234 276 48 14 chr1 123358992 123359137 -158834527 - L1ME1 LINE L1 -5028 1189 1040 400 263 147 55 chr1 123359141 123359483 -158834181 - L1ME1 LINE L1 -4877 819 580 366 343 59 79 chr1 123359677 123360129 -158833535 - L1ME1 LINE L1 -5542 663 103 183 42 0 0 chr1 123360130 123360154 -158833510 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 196 30 61 0 chr1 123360153 123360186 -158833478 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 345 305 43 24 chr1 123360621 123360713 -158832951 - L1ME3 LINE L1 -6 6156 6067 2187 138 0 0 chr1 123360713 123361017 -158832647 - AluSx SINE Alu -8 304 1 345 305 43 24 chr1 123361017 123361134 -158832530 - L1ME3 LINE L1 -95 6067 5943 244 167 0 0 chr1 123361134 123361176 -158832488 - MLT1B LTR MaLR -218 172 131 632 235 30 0 chr1 123361221 123361387 -158832277 - L1ME3 LINE L1 -274 5888 5718 311 146 0 0 chr1 123361680 123361728 -158831936 + MLT1B LTR MaLR 4 51 -339 2754 174 23 24 chr1 123361730 123362350 -158831314 - L1 LINE L1 -1277 4869 4251 791 140 0 29 chr1 123362350 123362486 -158831178 - Tigger1 DNA MER2_type -2286 132 1 1072 148 37 23 chr1 123362489 123362705 -158830959 + L1MC1 LINE L1 5925 6143 -190 642 221 195 7 chr1 123362705 123362859 -158830805 - AluSc SINE Alu -121 188 6 3350 180 74 11 chr1 123362879 123362901 -158830763 - L1MB5 LINE L1 -76 6098 6079 2156 113 0 3 chr1 123362901 123363194 -158830470 - AluSx SINE Alu -20 292 1 3350 180 74 11 chr1 123363194 123364022 -158829642 - L1MB5 LINE L1 -95 6079 5189 1767 205 29 5 chr1 123364078 123364454 -158829210 + MER88 LTR ERVL 79 463 -1 2135 70 3 0 chr1 123366477 123366761 -158826903 - L1PA5 LINE L1 -8 6146 5862 250 283 22 11 chr1 123366844 123366936 -158826728 + MIR3 SINE MIR 79 171 -37 249 338 136 0 chr1 123366947 123367101 -158826563 - MIR SINE MIR 0 262 88 207 100 0 0 chr1 123367190 123367220 -158826444 + (CATA)n Simple_repeat Simple_repeat 2 31 0 1114 131 0 21 chr1 123367222 123367413 -158826251 + L1PA13 LINE L1 1616 1802 -4985 254 195 12 0 chr1 123367413 123367495 -158826169 + (TA)n Simple_repeat Simple_repeat 1 83 0 6311 183 26 12 chr1 123367755 123369871 -158823793 - L1PA14 LINE L1 -3 6158 4027 4972 233 21 16 chr1 123370497 123372507 -158821157 + L1PA13 LINE L1 1427 3461 -3336 740 96 0 16 chr1 123372700 123372825 -158820839 - AluY SINE Alu -188 123 1 1302 228 134 2 chr1 123372876 123373293 -158820371 - L1MEc LINE L1 -5507 889 418 1416 206 194 5 chr1 123373309 123373732 -158819932 + MLT1D LTR MaLR 3 505 0 961 246 132 12 chr1 123373735 123374060 -158819604 - L1MEc LINE L1 -5991 405 42 693 160 164 9 chr1 123374066 123374285 -158819379 - MER33 DNA MER1_type -30 294 42 22 0 0 0 chr1 123374566 123374588 -158819076 + AT_rich Low_complexity Low_complexity 1 22 0 2078 82 14 14 chr1 123374736 123375017 -158818647 + AluSq SINE Alu 1 281 -32 315 0 0 0 chr1 123375017 123375052 -158818612 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 382 305 119 26 chr1 123375073 123375299 -158818365 - MIR SINE MIR -13 249 3 25 31 0 0 chr1 123375319 123375351 -158818313 + AT_rich Low_complexity Low_complexity 1 32 0 1986 164 13 0 chr1 123375746 123376050 -158817614 + AluSx SINE Alu 1 308 -4 2278 115 3 0 chr1 123378771 123379083 -158814581 - AluSp SINE Alu 0 313 1 191 340 0 0 chr1 123381118 123381171 -158812493 + MIR SINE MIR 83 135 -73 391 249 144 17 chr1 123381192 123381365 -158812299 - L1MC5 LINE L1 -36 7925 7731 289 266 84 23 chr1 123381379 123381642 -158812022 - L1MC5 LINE L1 -286 7675 7397 311 310 76 13 chr1 123381699 123381857 -158811807 - L1MC4a LINE L1 -396 7412 7245 220 276 19 86 chr1 123381863 123381968 -158811696 + MIR SINE MIR 115 212 -50 402 258 10 0 chr1 123383368 123383465 -158810199 + MIR SINE MIR 165 262 0 2500 82 0 0 chr1 123383558 123383862 -158809802 + AluY SINE Alu 1 304 -7 1482 204 120 52 chr1 123385458 123385820 -158807844 - MLT1F1 LTR MaLR 0 567 166 2020 125 14 14 chr1 123385820 123386117 -158807547 - AluSx SINE Alu -4 308 12 1482 204 120 52 chr1 123386117 123386214 -158807450 - MLT1F1 LTR MaLR -401 166 77 2245 112 6 6 chr1 123386625 123386938 -158806726 - AluSq SINE Alu 0 313 1 2143 115 7 0 chr1 123386938 123387234 -158806430 - AluSx SINE Alu -12 300 3 916 354 71 13 chr1 123387259 123387782 -158805882 + L2 LINE L2 2318 2870 -444 284 148 16 0 chr1 123387958 123388019 -158805645 + GA-rich Low_complexity Low_complexity 2 63 0 19053 158 29 6 chr1 123388177 123391595 -158802069 + L1M1 LINE L1 16 3514 -4051 791 248 45 58 chr1 123391607 123391727 -158801937 + L1ME3A LINE L1 4248 4368 -1778 1699 174 18 11 chr1 123391727 123392008 -158801656 + AluJo SINE Alu 4 286 -26 791 248 45 58 chr1 123392008 123392371 -158801293 + L1ME3A LINE L1 4368 4725 -1421 1174 212 76 40 chr1 123392494 123392928 -158800736 + MER67B LTR ERV1 1 355 -306 1955 103 57 11 chr1 123392928 123393209 -158800455 + AluSg1 SINE Alu 1 294 -15 1174 212 76 40 chr1 123393209 123393266 -158800398 + MER67B LTR ERV1 355 409 -252 456 250 52 19 chr1 123393237 123393463 -158800201 + MER67D LTR ERV1 275 539 -4 * 354 275 19 31 chr1 123393510 123393670 -158799994 + L1ME3A LINE L1 4884 5041 -1105 14468 204 27 19 chr1 123393690 123395034 -158798630 + L1PA15 LINE L1 1669 3000 -3868 2517 78 0 0 chr1 123395034 123395341 -158798323 - AluSp SINE Alu -6 307 1 14468 204 27 19 chr1 123395341 123395777 -158797887 + L1PA15 LINE L1 3000 3431 -3437 2280 109 0 6 chr1 123395777 123396088 -158797576 + AluSx SINE Alu 1 309 -3 14468 204 27 19 chr1 123396088 123397653 -158796011 + L1PA15 LINE L1 3431 4981 -1887 2112 142 0 16 chr1 123397653 123397970 -158795694 - AluSx SINE Alu 0 312 1 14468 204 27 19 chr1 123397970 123399786 -158793878 + L1PA15 LINE L1 4981 6868 0 946 307 40 27 chr1 123399792 123399968 -158793696 + L1ME3A LINE L1 5276 5448 -722 1804 123 4 0 chr1 123399968 123400219 -158793445 + AluSx SINE Alu 39 290 -22 946 307 40 27 chr1 123400219 123400644 -158793020 + L1ME3A LINE L1 5448 5885 -285 2357 38 0 11 chr1 123400662 123400977 -158792687 + AluY SINE Alu 1 312 0 257 280 42 68 chr1 123401074 123401192 -158792472 + L1ME3A LINE L1 5965 6079 -91 24 0 0 0 chr1 123401271 123401295 -158792369 + AT_rich Low_complexity Low_complexity 1 24 0 474 280 44 80 chr1 123401421 123401671 -158791993 + L1MEc LINE L1 1570 1810 -4586 449 279 60 24 chr1 123401970 123402332 -158791332 + L1MEc LINE L1 2171 2506 -3709 388 179 0 24 chr1 123402387 123402471 -158791193 + MLT2F LTR ERVL 67 148 -515 1653 228 37 3 chr1 123402501 123402878 -158790786 + MLT2F LTR ERVL 213 602 -61 385 228 66 151 chr1 123402978 123403237 -158790427 - L2 LINE L2 0 3313 3077 364 314 104 14 chr1 123403268 123403488 -158790176 + L1MEc LINE L1 3742 3981 -2234 22 70 0 0 chr1 123403495 123403538 -158790126 + AT_rich Low_complexity Low_complexity 1 43 0 391 305 80 10 chr1 123403634 123403834 -158789830 + L1MEc LINE L1 4084 4297 -1918 3029 83 30 11 chr1 123404608 123405044 -158788620 + MLT2A1 LTR ERVL 1 444 0 277 282 36 0 chr1 123405101 123405211 -158788453 + L1ME LINE L1 1535 1648 -4748 * 5376 161 34 13 chr1 123405207 123406322 -158787342 + L1MC1 LINE L1 5188 6327 -6 348 292 87 31 chr1 123406324 123406485 -158787179 + L1ME LINE L1 1623 1792 -4604 289 247 10 10 chr1 123407071 123407168 -158786496 + L1ME LINE L1 2514 2610 -3605 1610 191 47 39 chr1 123407198 123407278 -158786386 + MSTD LTR MaLR 1 79 -317 2273 120 13 26 chr1 123407278 123407660 -158786004 - L1PA14 LINE L1 -3 6158 5782 1610 191 47 39 chr1 123407660 123407961 -158785703 + MSTD LTR MaLR 79 385 -11 2342 270 70 57 chr1 123407973 123408116 -158785548 + L1ME LINE L1 2639 2779 -3436 1808 190 96 44 chr1 123408116 123408481 -158785183 - MLT1D LTR MaLR 0 505 108 2092 118 17 0 chr1 123408481 123408777 -158784887 + AluSx SINE Alu 1 301 -11 1808 190 96 44 chr1 123408777 123408889 -158784775 - MLT1D LTR MaLR -397 108 3 2342 270 70 57 chr1 123408889 123409815 -158783849 + L1ME LINE L1 2779 3691 -2524 1795 123 95 74 chr1 123409815 123410182 -158783482 - THE1C LTR MaLR 0 375 1 2342 270 70 57 chr1 123410182 123410511 -158783153 + L1ME LINE L1 3691 4014 -2201 2067 134 25 101 chr1 123410511 123410957 -158782707 + MLT2D LTR ERVL 3 414 0 2342 270 70 57 chr1 123410957 123411781 -158781883 + L1ME LINE L1 4014 4892 -1323 322 214 71 0 chr1 123411772 123411856 -158781808 + L1ME LINE L1 5803 5892 -339 * 21 0 0 0 chr1 123411894 123411915 -158781749 + AT_rich Low_complexity Low_complexity 1 21 0 981 301 47 19 chr1 123412068 123412646 -158781018 + L1M4 LINE L1 4476 5069 -1077 1974 236 118 52 chr1 123412657 123413277 -158780387 - MLT2F LTR ERVL 0 663 3 25 0 0 0 chr1 123413329 123413354 -158780310 + AT_rich Low_complexity Low_complexity 1 25 0 704 280 126 38 chr1 123413931 123414428 -158779236 - L2 LINE L2 -62 3251 2699 311 239 18 9 chr1 123414438 123414547 -158779117 - L1MD3 LINE L1 -8 7987 7878 3794 96 16 0 chr1 123414559 123415146 -158778518 - L1PA13 LINE L1 -342 5819 5225 2055 129 15 0 chr1 123415146 123415475 -158778189 + L1PA13 LINE L1 5814 6152 -11 842 215 29 36 chr1 123415488 123415762 -158777902 - L1MD3 LINE L1 -144 7851 7580 1123 206 25 118 chr1 123415770 123416177 -158777487 - MLT1A2 LTR MaLR -5 369 1 228 253 33 33 chr1 123416179 123416270 -158777394 - L1MC4a LINE L1 -404 7404 7314 6837 61 3 0 chr1 123416447 123418087 -158775577 - L1PA6 LINE L1 -2 6152 4508 1876 209 66 80 chr1 123418081 123418719 -158774945 - L1MC4a LINE L1 -490 7318 6690 * 20919 159 25 8 chr1 123418720 123424567 -158769097 + L1MA2 LINE L1 17 6023 -1700 2538 45 0 0 chr1 123424567 123424857 -158768807 + AluY SINE Alu 13 302 -9 20919 159 25 8 chr1 123424857 123426589 -158767075 + L1MA2 LINE L1 6023 7723 0 3410 213 46 62 chr1 123426617 123427923 -158765741 - L1MC4a LINE L1 -1104 6704 5281 2787 260 92 18 chr1 123427924 123428796 -158764868 - L2 LINE L2 -616 2698 1763 253 186 100 14 chr1 123428959 123429029 -158764635 - MIR SINE MIR -5 257 182 349 364 0 19 chr1 123429152 123429306 -158764358 + L2 LINE L2 2882 3032 -240 2348 249 138 6 chr1 123429430 123430132 -158763532 - L2 LINE L2 -536 2778 1984 1422 202 71 7 chr1 123430355 123430637 -158763027 - AluJb SINE Alu -2 300 1 254 191 0 16 chr1 123430836 123430899 -158762765 + CT-rich Low_complexity Low_complexity 2 63 0 2099 115 0 3 chr1 123430899 123431185 -158762479 - AluSx SINE Alu -27 285 1 542 241 90 7 chr1 123431238 123431383 -158762281 - L2 LINE L2 -1313 2001 1845 2798 154 40 32 chr1 123431383 123431981 -158761683 + L1MB7 LINE L1 5573 6175 -9 2338 82 10 10 chr1 123432110 123432415 -158761249 - AluSx SINE Alu -7 305 1 687 169 17 0 chr1 123432452 123432570 -158761094 - FLAM_A SINE Alu -13 120 1 22 35 0 0 chr1 123433161 123433190 -158760474 + AT_rich Low_complexity Low_complexity 1 29 0 264 306 10 0 chr1 123434362 123434460 -158759204 - L1ME LINE L1 -421 5700 5602 2333 79 0 7 chr1 123434585 123434876 -158758788 - AluSc SINE Alu -20 289 1 2072 104 0 0 chr1 123434879 123435149 -158758515 - AluSx SINE Alu -13 299 30 198 191 0 0 chr1 123436374 123436416 -158757248 + (TA)n Simple_repeat Simple_repeat 1 42 0 41 48 0 0 chr1 123438323 123438385 -158755279 + AT_rich Low_complexity Low_complexity 1 62 0 266 360 120 12 chr1 123439211 123439461 -158754203 + L2 LINE L2 2940 3216 -97 1234 198 0 0 chr1 123439755 123439957 -158753707 - AluJb SINE Alu -28 284 83 184 339 0 0 chr1 123440119 123440175 -158753489 - L2 LINE L2 0 3272 3217 239 254 36 0 chr1 123440186 123440241 -158753423 + MER58 DNA MER1_type 2 58 -157 830 330 123 32 chr1 123440288 123440945 -158752719 + L2 LINE L2 2054 2770 -544 1435 350 133 21 chr1 123440946 123442279 -158751385 - L2 LINE L2 -1260 2054 573 2294 67 6 51 chr1 123442635 123442951 -158750713 + AluY SINE Alu 2 303 -8 193 412 33 20 chr1 123444442 123444595 -158749069 - MIR3 SINE MIR -48 160 6 241 258 90 11 chr1 123444711 123444800 -158748864 + MIR SINE MIR 57 152 -110 2224 82 41 0 chr1 123444928 123445220 -158748444 + AluSc SINE Alu 1 304 -5 236 348 54 9 chr1 123445532 123445644 -158748020 - MIR SINE MIR -64 198 82 228 316 169 30 chr1 123446075 123446312 -158747352 + L2 LINE L2 2360 2629 -685 237 302 63 48 chr1 123446674 123446800 -158746864 + L2 LINE L2 3142 3269 -3 196 238 111 16 chr1 123446815 123446878 -158746786 - MIR SINE MIR -183 79 11 315 0 0 0 chr1 123447520 123447555 -158746109 + (CA)n Simple_repeat Simple_repeat 2 36 0 201 264 303 34 chr1 123448018 123448196 -158745468 - MIR SINE MIR 0 262 37 309 352 75 5 chr1 123450171 123450370 -158743294 + L2 LINE L2 2006 2218 -1096 577 289 132 0 chr1 123450399 123450603 -158743061 - MIR SINE MIR -30 232 2 537 329 92 74 chr1 123450603 123451014 -158742650 + L2 LINE L2 2227 2652 -662 2246 80 3 0 chr1 123451014 123451302 -158742362 - AluY SINE Alu -9 302 14 537 329 92 74 chr1 123451302 123451440 -158742224 + L2 LINE L2 2652 2786 -528 2086 143 0 6 chr1 123451466 123451780 -158741884 - AluSx SINE Alu 0 312 1 378 0 0 0 chr1 123451891 123451933 -158741731 + (CA)n Simple_repeat Simple_repeat 1 42 0 1128 121 0 0 chr1 123452451 123452608 -158741056 - AluSg/x SINE Alu -10 300 144 2631 183 65 10 chr1 123452748 123453256 -158740408 + MER44D DNA MER2_type 1 591 -14 465 311 96 27 chr1 123453327 123453620 -158740044 + L1MEd LINE L1 938 1250 -4869 1927 250 75 38 chr1 123453726 123454041 -158739623 - MLT1E LTR MaLR -15 578 231 3336 195 39 2 chr1 123454041 123454678 -158738986 - MER67B LTR ERV1 0 661 1 1927 250 75 38 chr1 123454678 123454919 -158738745 - MLT1E LTR MaLR -362 231 1 9008 168 13 2 chr1 123455099 123457561 -158736103 + L1PA13 LINE L1 3669 6163 0 965 240 38 58 chr1 123458184 123458526 -158735138 + L1MEc LINE L1 49 383 -6013 2221 246 36 19 chr1 123458569 123459094 -158734570 - MLT2B3 LTR ERVL -20 534 1 1215 245 208 9 chr1 123459101 123459653 -158734011 + L1MEc LINE L1 411 1072 -5324 2182 118 0 3 chr1 123459726 123460030 -158733634 - AluSq SINE Alu -10 303 1 2598 40 7 0 chr1 123460425 123460726 -158732938 + AluY SINE Alu 1 303 -8 233 265 92 48 chr1 123460827 123461163 -158732501 - L1MEc LINE L1 -4928 1287 937 366 343 59 79 chr1 123461512 123461964 -158731700 - L1MEc LINE L1 -5542 663 103 196 30 61 0 chr1 123461986 123462019 -158731645 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 778 266 47 105 chr1 123462454 123462546 -158731118 - L1ME3 LINE L1 -6 6156 6060 2161 136 0 0 chr1 123462546 123462847 -158730817 - AluSx SINE Alu -8 304 4 778 266 47 105 chr1 123462847 123462967 -158730697 - L1ME3 LINE L1 -102 6060 5935 259 167 0 0 chr1 123462967 123463009 -158730655 - MLT1B LTR MaLR -218 172 131 778 266 47 105 chr1 123463009 123463220 -158730444 - L1ME3 LINE L1 -227 5935 5718 329 146 0 0 chr1 123463513 123463561 -158730103 + MLT1B LTR MaLR 4 51 -339 2952 174 23 23 chr1 123463563 123464182 -158729482 - L1 LINE L1 -1277 4869 4251 838 140 0 29 chr1 123464182 123464318 -158729346 - Tigger1 DNA MER2_type -2286 132 1 1806 156 69 15 chr1 123464321 123464711 -158728953 + L1MC2 LINE L1 5925 6335 -9 308 257 9 29 chr1 123464712 123464817 -158728847 + L1M4 LINE L1 2963 3065 -3081 306 98 0 0 chr1 123464820 123464861 -158728803 - MLT2B1 LTR ERVL 0 520 480 1496 209 0 31 chr1 123464864 123465151 -158728513 - AluJb SINE Alu -29 283 6 3586 180 74 11 chr1 123465171 123465193 -158728471 - L1MB5 LINE L1 -76 6098 6079 2141 115 0 3 chr1 123465193 123465488 -158728176 - AluSx SINE Alu -18 294 1 3586 180 74 11 chr1 123465488 123466316 -158727348 - L1MB5 LINE L1 -95 6079 5189 1898 205 29 5 chr1 123466372 123466748 -158726916 + MER88 LTR ERVL 79 463 -1 3731 50 2 2 chr1 123468771 123469234 -158724430 - L1PA5 LINE L1 -8 6146 5684 359 390 4 0 chr1 123470470 123470737 -158722927 - HERVL74 LTR ERVL -2343 3342 3075 481 341 61 41 chr1 123471453 123472162 -158721502 - HERVL74 LTR ERVL -584 2972 2250 368 291 69 34 chr1 123472468 123472643 -158721021 + L1M3a LINE L1 272 452 -5503 451 266 99 92 chr1 123472660 123473093 -158720571 + L1M3a LINE L1 535 970 -5333 1906 259 22 28 chr1 123473144 123474016 -158719648 + L1M3a LINE L1 1160 2092 -4290 3351 165 29 62 chr1 123474051 123475016 -158718648 + L1M2 LINE L1 4529 5452 -743 831 187 7 7 chr1 123475016 123475166 -158718498 - MSTB LTR MaLR -2 424 275 546 225 31 12 chr1 123475177 123475337 -158718327 - L1 LINE L1 -815 5331 5169 1322 212 14 11 chr1 123475337 123475620 -158718044 - MSTB LTR MaLR -142 284 1 984 197 0 0 chr1 123475620 123475808 -158717856 + L1M2 LINE L1 5446 5633 -679 2578 125 52 4 chr1 123476364 123476821 -158716843 - L1MA2 LINE L1 0 6304 5826 201 39 0 0 chr1 123476821 123476847 -158716817 + (TTG)n Simple_repeat Simple_repeat 2 27 0 353 125 0 0 chr1 123476853 123476917 -158716747 - L1PB1 LINE L1 -17 6134 6071 3480 164 54 2 chr1 123476917 123477949 -158715715 - L1P5 LINE L1 -566 5585 4488 485 196 18 62 chr1 123479356 123479524 -158714140 + L1 LINE L1 4095 4272 -1874 441 36 0 0 chr1 123480262 123480317 -158713347 + (CA)n Simple_repeat Simple_repeat 2 56 0 234 62 0 0 chr1 123480317 123480349 -158713315 + (GA)n Simple_repeat Simple_repeat 1 32 0 260 315 79 24 chr1 123480533 123480698 -158712966 + L2 LINE L2 2673 2846 -468 10139 172 36 56 chr1 123480721 123483598 -158710066 - L1MA2 LINE L1 0 7723 4791 1063 159 0 0 chr1 123483598 123483768 -158709896 - AluSc SINE Alu -1 308 139 10139 172 36 56 chr1 123483768 123484238 -158709426 - L1MA2 LINE L1 -2932 4791 4313 1171 64 0 13 chr1 123484238 123484395 -158709269 - L1PA11 LINE L1 0 6174 6020 10139 172 36 56 chr1 123484395 123485783 -158707881 - L1MA2 LINE L1 -3410 4313 2899 2176 85 7 36 chr1 123485783 123486090 -158707574 - AluY SINE Alu -13 298 1 10139 172 36 56 chr1 123486090 123486482 -158707182 - L1MA2 LINE L1 -4824 2899 2501 2319 113 24 46 chr1 123486482 123486854 -158706810 + THE1B LTR MaLR 1 364 0 10139 172 36 56 chr1 123486854 123487178 -158706486 - L1MA2 LINE L1 -5222 2501 2172 2119 114 14 7 chr1 123487178 123487467 -158706197 - AluSx SINE Alu -21 291 1 10139 172 36 56 chr1 123487467 123487479 -158706185 - L1MA2 LINE L1 -5551 2172 2161 2095 113 10 0 chr1 123487479 123487772 -158705892 - AluSx SINE Alu -16 296 1 10139 172 36 56 chr1 123487772 123488385 -158705279 - L1MA2 LINE L1 -5562 2161 1673 1777 120 4 0 chr1 123488385 123488644 -158705020 + THE1B LTR MaLR 1 260 -104 4026 71 9 2 chr1 123488644 123489177 -158704487 + L1PA8 LINE L1 5632 6168 -4 279 250 56 0 chr1 123489188 123489260 -158704404 - L1MA2 LINE L1 -7480 85 10 343 200 39 84 chr1 123489288 123489443 -158704221 + MER65A LTR ERV1 298 445 0 592 277 23 59 chr1 123489450 123489753 -158703911 + MER65A-int LTR ERV1 11 302 -4569 256 160 0 170 chr1 123489772 123489878 -158703786 + MER65A-int LTR ERV1 501 588 -4283 330 222 34 77 chr1 123489937 123490054 -158703610 + LTR57-int LTR ERVL 304 415 -4928 759 129 10 119 chr1 123490411 123490460 -158703204 + MER34 LTR ERV1 27 80 -462 817 150 8 15 chr1 123490460 123490593 -158703071 + FLAM_C SINE Alu 1 132 -1 759 129 10 119 chr1 123490593 123490736 -158702928 + MER34 LTR ERV1 80 198 -344 740 224 77 6 chr1 123490796 123490979 -158702685 + MER34 LTR ERV1 315 510 -32 677 161 0 0 chr1 123491072 123491184 -158702480 + FLAM_A SINE Alu 28 139 -3 402 222 28 8 chr1 123491442 123491565 -158702099 + MER65A-int LTR ERV1 3622 5678 -653 1463 273 41 16 chr1 123491576 123492060 -158701604 + MER65A-int LTR ERV1 4376 4871 0 319 250 58 0 chr1 123492078 123492182 -158701482 + MER65A LTR ERV1 19 128 -317 2036 196 80 9 chr1 123492532 123493094 -158700570 + L1 LINE L1 4266 4867 -1279 23585 144 17 23 chr1 123493598 123496072 -158697592 + L1PA8A LINE L1 756 3245 -3201 1917 52 0 0 chr1 123496072 123496301 -158697363 + AluY SINE Alu 82 310 -1 23585 144 17 23 chr1 123496301 123499541 -158694123 + L1PA8A LINE L1 3245 6433 -13 2607 89 0 22 chr1 123499567 123499937 -158693727 + L1PA8A LINE L1 5769 6130 -1 7182 166 21 31 chr1 123501018 123501904 -158691760 - L1MA5A LINE L1 0 6939 6046 2006 145 0 10 chr1 123501904 123502208 -158691456 - AluSx SINE Alu -11 301 1 7182 166 21 31 chr1 123502208 123503973 -158689691 - L1MA5A LINE L1 -893 6046 4313 3732 221 13 5 chr1 123503966 123504727 -158688937 - L1MA5A LINE L1 -5014 1775 1009 * 12168 225 31 18 chr1 123504905 123506749 -158686915 + L1P4 LINE L1 2184 4003 -3600 1718 194 0 0 chr1 123506749 123507072 -158686592 + AluJb SINE Alu 1 323 0 12168 225 31 18 chr1 123507072 123508941 -158684723 + L1P4 LINE L1 4003 5973 -1630 2169 69 0 4 chr1 123508941 123509244 -158684420 + AluY SINE Alu 10 311 0 12168 225 31 18 chr1 123509244 123510510 -158683154 + L1P4 LINE L1 5973 7221 -382 2930 207 27 15 chr1 123510520 123511177 -158682487 + L1M1 LINE L1 19 683 -6882 * 9584 157 14 7 chr1 123511176 123512976 -158680688 + L1P LINE L1 2410 4222 -1924 1706 93 24 38 chr1 123512989 123513280 -158680384 + THE1B LTR MaLR 8 294 -70 3031 169 57 11 chr1 123513283 123513893 -158679771 + LTR9B LTR ERV1 7 644 0 603 188 87 7 chr1 123513991 123514129 -158679535 + HUERS-P3 LTR ERV1 411 559 -6859 3838 199 20 23 chr1 123514200 123515037 -158678627 + HUERS-P3 LTR ERV1 1044 1878 -5540 * 6081 155 5 3 chr1 123515036 123516041 -158677623 + HUERS-P3 LTR ERV1 2278 3284 -5635 740 227 0 0 chr1 123516034 123516175 -158677489 + HUERS-P3 LTR ERV1 4539 4679 -4240 * 3841 141 5 3 chr1 123516207 123516823 -158676841 + HUERS-P3 LTR ERV1 4961 5577 -3342 3660 162 5 3 chr1 123516808 123517414 -158676250 + HUERS-P3 LTR ERV1 6162 6768 -2151 * 360 228 0 11 chr1 123517463 123517555 -158676109 + HUERS-P3 LTR ERV1 6856 6934 -484 745 184 12 11 chr1 123517557 123517752 -158675912 + HUERS-P3 LTR ERV1 2383 4320 -560 1270 192 5 5 chr1 123518087 123518306 -158675358 + HUERS-P3 LTR ERV1 8701 8919 0 2024 175 52 14 chr1 123518312 123518893 -158674771 + LTR9B LTR ERV1 7 644 0 421 287 9 0 chr1 123518893 123518968 -158674696 + THE1C LTR MaLR 298 373 -2 11816 93 11 1 chr1 123518969 123520527 -158673137 + THE1B-int LTR MaLR 1 1573 -7 2276 122 19 30 chr1 123520532 123520900 -158672764 + THE1B LTR MaLR 1 364 0 6662 150 14 0 chr1 123520901 123522834 -158670830 + L1PA11 LINE L1 4226 6174 0 2867 119 27 47 chr1 123522835 123523178 -158670486 + L1MA3 LINE L1 5769 6098 -207 2162 81 0 20 chr1 123523178 123523473 -158670191 + AluY SINE Alu 1 289 -22 2867 119 27 47 chr1 123523473 123523677 -158669987 + L1MA3 LINE L1 6098 6305 0 1328 100 5 0 chr1 123523708 123523898 -158669766 + L1PA16 LINE L1 5767 5957 -209 468 179 21 0 chr1 123523906 123524001 -158669663 + L1MA6 LINE L1 3876 3972 -2174 4793 158 37 27 chr1 123524001 123525730 -158667934 + L1MA6 LINE L1 4242 5952 -348 2393 67 0 0 chr1 123525730 123526029 -158667635 + AluY SINE Alu 1 299 -12 4793 158 37 27 chr1 123526029 123526128 -158667536 + L1MA6 LINE L1 5952 6049 -251 2288 81 7 3 chr1 123526128 123526424 -158667240 - AluSp SINE Alu -16 297 1 4793 158 37 27 chr1 123526424 123526585 -158667079 + L1MA6 LINE L1 6049 6300 0 1333 271 108 13 chr1 123526658 123527260 -158666404 - L1ME3A LINE L1 -238 6001 5343 605 167 0 0 chr1 123527292 123527382 -158666282 + 5S rRNA rRNA 1 90 -31 883 315 60 19 chr1 123527382 123528100 -158665564 - L1ME3A LINE L1 -907 5308 4562 411 167 12 0 chr1 123528167 123528251 -158665413 - L1MA6 LINE L1 -167 6133 6049 485 99 0 0 chr1 123528255 123528326 -158665338 - Alu SINE Alu -15 295 225 1891 126 108 59 chr1 123528326 123528511 -158665153 - MSTA LTR MaLR -38 390 215 2211 97 0 0 chr1 123528511 123528800 -158664864 - AluSx SINE Alu -23 289 1 1891 126 108 59 chr1 123528800 123528986 -158664678 - MSTA LTR MaLR -213 215 1 319 303 264 11 chr1 123529058 123529335 -158664329 - L1ME3A LINE L1 -1842 4373 4027 198 0 0 0 chr1 123529865 123529887 -158663777 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 714 212 162 26 chr1 123531273 123531692 -158661972 - L1ME3A LINE L1 -2830 3385 2910 199 256 0 0 chr1 123531788 123531827 -158661837 + L2 LINE L2 3137 3175 -97 14955 203 26 57 chr1 123532001 123532773 -158660891 - L1PA15 LINE L1 -24 6792 5998 7054 59 14 0 chr1 123532773 123533868 -158659796 - L1PA7 LINE L1 -1 6153 5054 14955 203 26 57 chr1 123533868 123534604 -158659060 - L1PA15 LINE L1 -818 5998 5241 207 0 0 0 chr1 123534604 123534627 -158659037 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14955 203 26 57 chr1 123534627 123538135 -158655529 - L1PA15 LINE L1 -1575 5241 1926 322 155 0 28 chr1 123538257 123538328 -158655336 + MADE1 DNA Mariner 12 80 0 803 202 110 0 chr1 123538431 123538604 -158655060 - L1PA15 LINE L1 -4889 1898 1707 2349 91 16 0 chr1 123538624 123538943 -158654721 - L1PA10 LINE L1 -11 6157 5834 486 156 0 0 chr1 123538943 123539033 -158654631 + AluSg/x SINE Alu 217 306 -3 292 300 56 6 chr1 123539051 123539231 -158654433 - L1ME3A LINE L1 -3756 2459 2271 13324 204 11 8 chr1 123539688 123543065 -158650599 - L1P5 LINE L1 -461 5690 2310 7732 21 0 0 chr1 123543074 123544663 -158649001 - L1PA3 LINE L1 -3 6152 4563 8259 22 5 1 chr1 123544663 123545640 -158648024 + L1PA3 LINE L1 3568 4548 -1598 * 19197 104 46 5 chr1 123545635 123545887 -158647777 - L1PBa LINE L1 -3818 3044 2804 243 0 0 0 chr1 123545887 123545914 -158647750 + (TC)n Simple_repeat Simple_repeat 2 28 0 19197 104 46 5 chr1 123545914 123548583 -158645081 - L1PBa LINE L1 -4058 2804 3 319 256 94 17 chr1 123548598 123548715 -158644949 + MLT1F1 LTR MaLR 112 237 -312 397 217 25 76 chr1 123548742 123548899 -158644765 + MLT1F1 LTR MaLR 413 561 -6 264 282 36 0 chr1 123548905 123549012 -158644652 + MLT1F1-int LTR MaLR 1 91 -1280 368 254 44 26 chr1 123549070 123549184 -158644480 + MLT1H LTR MaLR 433 548 -1 509 222 60 23 chr1 123549185 123549401 -158644263 - L1ME3A LINE L1 -4089 2307 2084 768 248 101 67 chr1 123550628 123550686 -158642978 + MLT1H LTR MaLR 72 127 -378 1543 190 14 24 chr1 123550686 123550981 -158642683 - AluJb SINE Alu -19 293 2 768 248 101 67 chr1 123550981 123551379 -158642285 + MLT1H LTR MaLR 127 504 -1 373 222 40 0 chr1 123551380 123551479 -158642185 - L1MEc LINE L1 -4089 2307 2205 24 0 0 0 chr1 123551527 123551551 -158642113 + AT_rich Low_complexity Low_complexity 1 24 0 4105 158 90 12 chr1 123551587 123552353 -158641311 + LTR1B LTR ERV1 1 826 0 4201 156 11 0 chr1 123552371 123553089 -158640575 - L1MA4A LINE L1 -8 6295 5570 582 15 0 0 chr1 123553101 123553168 -158640496 + (TTCC)n Simple_repeat Simple_repeat 1 67 0 2133 122 7 3 chr1 123553168 123553472 -158640192 - AluSq SINE Alu -8 305 1 1434 110 75 43 chr1 123553472 123553753 -158639911 - L1MA4A LINE L1 -718 5585 5296 * 1578 199 41 37 chr1 123553746 123554033 -158639631 - L1PB4 LINE L1 0 6156 5872 2515 11 0 0 chr1 123554033 123554307 -158639357 + AluYa5 SINE Alu 35 308 -3 1578 199 41 37 chr1 123554307 123554425 -158639239 - L1PB4 LINE L1 -284 5872 5752 1102 103 0 13 chr1 123554425 123554581 -158639083 - L1PA15 LINE L1 -13 6152 5999 1578 199 41 37 chr1 123554581 123554606 -158639058 - L1PB4 LINE L1 -404 5752 5729 * 8874 194 24 9 chr1 123554595 123556088 -158637576 - L1PA15 LINE L1 -320 5845 4305 1953 153 0 10 chr1 123556088 123556382 -158637282 - AluSx SINE Alu -19 293 3 8874 194 24 9 chr1 123556382 123557341 -158636323 - L1PA15 LINE L1 -1860 4305 3362 363 225 100 8 chr1 123557344 123557464 -158636200 - MER106B DNA MER1_type -11 1048 918 232 286 0 0 chr1 123557467 123557523 -158636141 - MER106B DNA MER1_type -1002 57 2 1171 281 105 8 chr1 123557853 123558245 -158635419 + MER70B LTR ERVL 1 430 -148 556 263 87 53 chr1 123558471 123558940 -158634724 - L1MC4 LINE L1 -786 7022 6563 41900 58 5 1 chr1 123558993 123565118 -158628546 - L1PA5 LINE L1 -5 6149 1 1565 118 35 82 chr1 123565212 123565552 -158628112 - L1MA7 LINE L1 -2 6289 5966 4012 179 43 15 chr1 123565559 123566414 -158627250 - L1 LINE L1 -1293 4853 3975 * 8785 200 22 17 chr1 123566413 123569406 -158624258 - L1PA15 LINE L1 -1 7602 4602 1656 150 56 22 chr1 123569407 123569769 -158623895 + THE1C LTR MaLR 1 380 -48 4590 273 39 31 chr1 123569782 123571565 -158622099 - L1PA15 LINE L1 -4510 3071 1275 1806 104 0 17 chr1 123571599 123571839 -158621825 + AluSp SINE Alu 1 236 -77 15899 71 2 4 chr1 123572165 123575109 -158618555 + L1PA6 LINE L1 3210 6154 0 243 159 0 48 chr1 123575116 123575179 -158618485 - MSTB LTR MaLR -165 261 202 2334 37 0 0 chr1 123575189 123575462 -158618202 - AluY SINE Alu -4 307 35 1016 238 39 3 chr1 123575463 123575749 -158617915 + L1PB4 LINE L1 5861 6156 0 * 1352 110 75 43 chr1 123575742 123576023 -158617641 + L1MA4A LINE L1 5296 5585 -718 2155 122 7 3 chr1 123576023 123576327 -158617337 + AluSq SINE Alu 1 305 -8 582 15 0 0 chr1 123576327 123576394 -158617270 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 4139 156 11 0 chr1 123576406 123577124 -158616540 + L1MA4A LINE L1 5570 6295 -8 4141 158 90 12 chr1 123577142 123577908 -158615756 - LTR1B LTR ERV1 0 826 1 24 0 0 0 chr1 123577944 123577968 -158615696 + AT_rich Low_complexity Low_complexity 1 24 0 349 222 40 0 chr1 123578016 123578115 -158615549 + L1MEc LINE L1 2205 2307 -4089 628 248 101 67 chr1 123578116 123578514 -158615150 - MLT1H LTR MaLR -1 537 127 1565 190 14 24 chr1 123578514 123578809 -158614855 + AluJb SINE Alu 2 293 -19 628 248 101 67 chr1 123578809 123578867 -158614797 - MLT1H LTR MaLR -411 127 72 466 222 60 23 chr1 123580094 123580310 -158613354 + L1ME3A LINE L1 2731 2954 -4089 335 254 44 26 chr1 123580311 123580425 -158613239 - MLT1H LTR MaLR -1 548 433 238 256 39 0 chr1 123580507 123580585 -158613079 - MLT1F1-int LTR MaLR -1285 86 6 350 217 25 76 chr1 123580596 123580753 -158612911 - MLT1F1 LTR MaLR -6 561 413 280 256 94 17 chr1 123580780 123580897 -158612767 - MLT1F1 LTR MaLR -312 237 112 18215 104 46 5 chr1 123580912 123583580 -158610084 + L1P5 LINE L1 3 2804 -4058 243 0 0 0 chr1 123583580 123583607 -158610057 + (GA)n Simple_repeat Simple_repeat 2 28 0 18215 104 46 5 chr1 123583607 123583859 -158609805 + L1P5 LINE L1 2804 3044 -3818 7904 22 5 1 chr1 123583854 123584831 -158608833 - L1PA3 LINE L1 -1598 4548 3568 * 7738 21 1 0 chr1 123584831 123586420 -158607244 + L1PA3 LINE L1 4563 6152 -3 12490 205 10 7 chr1 123586429 123589800 -158603864 + L1P5 LINE L1 3026 6398 -469 256 300 56 6 chr1 123590263 123590443 -158603221 + L1ME3A LINE L1 2918 3106 -3756 484 156 0 0 chr1 123590461 123590551 -158603113 - AluSg/x SINE Alu -3 307 218 2359 91 16 0 chr1 123590551 123590870 -158602794 + L1PA10 LINE L1 5834 6157 -11 748 202 110 0 chr1 123590890 123591063 -158602601 + L1PA15 LINE L1 1707 1898 -4889 303 155 0 28 chr1 123591166 123591237 -158602427 - MADE1 DNA Mariner 0 80 12 13824 203 26 56 chr1 123591359 123594866 -158598798 + L1PA15 LINE L1 1926 5536 -1280 207 0 0 0 chr1 123594866 123594889 -158598775 + (CAA)n Simple_repeat Simple_repeat 2 24 0 13824 203 26 56 chr1 123594889 123595625 -158598039 + L1PA15 LINE L1 5536 5998 -818 7050 59 6 0 chr1 123595625 123596720 -158596944 + L1PA7 LINE L1 5054 6153 -1 13824 203 26 56 chr1 123596720 123597492 -158596172 + L1PA15 LINE L1 5998 6792 -24 202 256 0 0 chr1 123597666 123597705 -158595959 - L2 LINE L2 -97 3175 3137 623 212 162 26 chr1 123597801 123598220 -158595444 + L1ME3A LINE L1 3557 4032 -2830 198 0 0 0 chr1 123599605 123599627 -158594037 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 318 303 264 11 chr1 123600157 123600434 -158593230 + L1ME3A LINE L1 4674 5020 -1842 1758 126 108 59 chr1 123600506 123600692 -158592972 + MSTA LTR MaLR 1 177 -251 2211 97 0 0 chr1 123600692 123600981 -158592683 + AluSx SINE Alu 1 289 -23 1758 126 108 59 chr1 123600981 123601166 -158592498 + MSTA LTR MaLR 177 390 -38 492 99 0 0 chr1 123601166 123601237 -158592427 + Alu SINE Alu 224 294 -15 385 167 12 0 chr1 123601241 123601325 -158592339 + L1MA6 LINE L1 6049 6133 -167 706 313 64 24 chr1 123601392 123602110 -158591554 + L1ME3A LINE L1 5209 5955 -907 571 167 0 0 chr1 123602110 123602200 -158591464 - 5S rRNA rRNA -31 90 1 1169 278 105 10 chr1 123602232 123602832 -158590832 + L1ME3A LINE L1 5990 6646 -240 813 136 13 7 chr1 123602907 123603062 -158590602 - L1MA6 LINE L1 0 6300 6145 1316 119 5 5 chr1 123603068 123603253 -158590411 + AluSp SINE Alu 1 185 -128 401 86 2 0 chr1 123603970 123604032 -158589632 - L1MA2 LINE L1 -30 6270 6208 5101 193 20 31 chr1 123604032 123604289 -158589375 - L1 LINE L1 -926 5220 4962 548 219 49 8 chr1 123604289 123604412 -158589252 - FLAM_C SINE Alu -5 128 1 5101 193 20 31 chr1 123604412 123605391 -158588273 - L1 LINE L1 -1184 4962 3997 5088 203 48 11 chr1 123605386 123606711 -158586953 - L1 LINE L1 -2421 3725 2352 * 4268 196 39 19 chr1 123606719 123607483 -158586181 + L1MC1 LINE L1 5264 6056 -277 2193 161 3 0 chr1 123607483 123607819 -158585845 + MER1B DNA MER1_type 1 337 0 4268 196 39 19 chr1 123607819 123608097 -158585567 + L1MC1 LINE L1 6056 6327 -6 2067 237 17 17 chr1 123608114 123608688 -158584976 + L1MB8 LINE L1 5490 6063 -115 2284 111 0 3 chr1 123608737 123609043 -158584621 + AluSg SINE Alu 1 305 -5 1199 132 10 0 chr1 123609211 123609408 -158584256 + MER4A LTR ERV1 466 664 0 1323 164 47 64 chr1 123609410 123609484 -158584180 - MSTB LTR MaLR -25 403 329 23321 67 3 4 chr1 123609484 123613414 -158580250 + L1PA6 LINE L1 2237 6154 0 1323 164 47 64 chr1 123613414 123613494 -158580170 - MSTB LTR MaLR -99 329 249 2125 121 0 13 chr1 123613494 123613801 -158579863 - AluY SINE Alu -4 307 5 1323 164 47 64 chr1 123613801 123614004 -158579660 - MSTB LTR MaLR -179 249 1 7844 187 20 30 chr1 123614004 123615671 -158577993 - MSTB-int LTR MaLR 0 1651 1 1037 231 146 0 chr1 123615677 123616006 -158577658 - MSTB1 LTR MaLR -6 426 50 277 145 81 0 chr1 123616010 123616072 -158577592 + L1MD2 LINE L1 5910 5976 -383 28 48 0 0 chr1 123616396 123616438 -158577226 + AT_rich Low_complexity Low_complexity 1 42 0 2637 107 33 0 chr1 123616642 123617034 -158576630 + LTR22A LTR ERVK 16 420 -38 7683 176 85 11 chr1 123617036 123620361 -158573303 - L1PBa LINE L1 -3113 3749 6 514 323 70 40 chr1 123620432 123620760 -158572904 - L1ME LINE L1 -4774 1610 1273 21 89 0 0 chr1 123620775 123620831 -158572833 + AT_rich Low_complexity Low_complexity 1 56 0 387 282 193 15 chr1 123620875 123621134 -158572530 - L1ME LINE L1 -5065 1307 1003 473 211 183 29 chr1 123621764 123621972 -158571692 - L1ME1 LINE L1 -89 6872 6633 2210 175 28 0 chr1 123622014 123622437 -158571227 - L1MA4 LINE L1 -55 7664 7230 1436 238 3 3 chr1 123622439 123622733 -158570931 - AluJb SINE Alu -13 299 6 4892 178 99 35 chr1 123622742 123624589 -158569075 - L1MA4 LINE L1 -478 7241 5263 1868 104 32 0 chr1 123624592 123624842 -158568822 + AluSx SINE Alu 1 258 -54 6899 235 80 24 chr1 123624842 123628445 -158565219 - L1MA4 LINE L1 -3053 4512 17 747 219 91 61 chr1 123628446 123628775 -158564889 - L1ME1 LINE L1 -316 6645 6307 1414 229 82 22 chr1 123628798 123629299 -158564365 - L1ME1 LINE L1 -1290 5651 5121 569 277 175 24 chr1 123629308 123629528 -158564136 - L1ME1 LINE L1 -2217 4724 4539 2418 139 49 7 chr1 123629528 123629939 -158563725 + MSTA LTR MaLR 1 428 0 569 277 175 24 chr1 123629939 123630300 -158563364 - L1ME1 LINE L1 -2402 4539 4055 1312 209 178 5 chr1 123630314 123630702 -158562962 - MLT1C LTR MaLR -7 460 6 303 280 98 14 chr1 123630774 123630988 -158562676 - L1ME1 LINE L1 -5063 2059 1828 600 322 71 3 chr1 123631030 123631384 -158562280 - L1ME1 LINE L1 -4890 1533 1156 234 250 29 0 chr1 123631410 123631478 -158562186 + (TA)n Simple_repeat Simple_repeat 1 70 0 1466 156 71 19 chr1 123631478 123631747 -158561917 - AluJo SINE Alu -29 283 1 2360 95 0 7 chr1 123632425 123632729 -158560935 - AluSx SINE Alu -10 302 1 453 226 20 20 chr1 123632843 123632945 -158560719 - MLT1J1 LTR MaLR -316 130 29 2476 179 47 59 chr1 123633191 123633748 -158559916 - MER44D DNA MER2_type 0 605 1 21 0 0 0 chr1 123633830 123633851 -158559813 + AT_rich Low_complexity Low_complexity 1 21 0 225 65 0 0 chr1 123637803 123637834 -158555830 + (A)n Simple_repeat Simple_repeat 1 31 0 542 252 68 63 chr1 123638353 123638575 -158555089 - L2 LINE L2 -1 3312 3090 979 175 95 10 chr1 123638702 123638902 -158554762 + MLT1C LTR MaLR 251 467 0 287 295 13 0 chr1 123639172 123639250 -158554414 - L2 LINE L2 -2 3270 3192 24 0 0 0 chr1 123639295 123639319 -158554345 + AT_rich Low_complexity Low_complexity 1 24 0 429 298 58 120 chr1 123639323 123639856 -158553808 - L2 LINE L2 -326 2987 2512 1623 196 23 39 chr1 123640771 123641016 -158552648 + MER31B LTR ERV1 1 239 -227 2308 156 40 17 chr1 123641016 123641438 -158552226 + MSTB1 LTR MaLR 1 432 0 1623 196 23 39 chr1 123641438 123641579 -158552085 + MER31B LTR ERV1 239 381 -85 632 241 0 0 chr1 123642451 123642584 -158551080 - FLAM_A SINE Alu 0 133 1 191 292 15 0 chr1 123644036 123644101 -158549563 + L2 LINE L2 2895 2960 -312 496 261 27 0 chr1 123644136 123644247 -158549417 - L2 LINE L2 -9 3304 3191 396 338 20 35 chr1 123644420 123644618 -158549046 + MIR SINE MIR 65 259 -3 22 0 0 0 chr1 123644934 123644956 -158548708 + AT_rich Low_complexity Low_complexity 1 22 0 294 80 0 0 chr1 123645546 123645596 -158548068 - Alu SINE Alu 0 302 253 262 341 11 11 chr1 123645614 123645705 -158547959 - MIR3 SINE MIR -13 195 105 1172 214 99 28 chr1 123645907 123646229 -158547435 + MER2 DNA MER2_type 1 345 0 350 295 82 49 chr1 123646968 123647151 -158546513 + L1MC/D LINE L1 5539 5727 -2081 282 57 0 0 chr1 123647466 123647501 -158546163 + U2 snRNA snRNA 1 35 -153 699 305 35 0 chr1 123647618 123647818 -158545846 + MIR SINE MIR 8 214 -48 2297 93 14 0 chr1 123647835 123648125 -158545539 + AluSg SINE Alu 1 294 -16 2101 97 0 55 chr1 123648129 123648439 -158545225 + AluSg SINE Alu 5 297 -13 331 289 74 0 chr1 123649217 123649338 -158544326 + L2 LINE L2 2507 2636 -678 3443 171 177 22 chr1 123649341 123650076 -158543588 + MER21B LTR ERV1 1 849 -14 1942 156 10 3 chr1 123650081 123650383 -158543281 - AluJb SINE Alu -3 309 6 2254 111 0 0 chr1 123650587 123650885 -158542779 - AluSx SINE Alu -12 300 3 369 252 87 10 chr1 123651061 123651164 -158542500 - MIR SINE MIR -150 112 2 356 255 52 59 chr1 123651304 123651457 -158542207 + L2 LINE L2 3107 3258 -55 29 0 0 0 chr1 123651610 123651639 -158542025 + AT_rich Low_complexity Low_complexity 1 29 0 1019 299 28 28 chr1 123652161 123652556 -158541108 - L1MEd LINE L1 -5402 717 323 367 279 144 57 chr1 123652710 123653008 -158540656 - L1MEd LINE L1 -5790 329 6 274 353 129 22 chr1 123653011 123653283 -158540381 + L2 LINE L2 2967 3267 -5 259 221 59 0 chr1 123653622 123653690 -158539974 + MIR SINE MIR 79 150 -112 2192 82 3 64 chr1 123653694 123654024 -158539640 + AluSg SINE Alu 1 310 0 557 168 46 46 chr1 123654051 123654182 -158539482 - MER3 DNA MER1_type -1 208 78 1348 87 0 6 chr1 123654183 123654355 -158539309 + AluSc SINE Alu 82 252 -57 2515 46 7 3 chr1 123654381 123654684 -158538980 + AluY SINE Alu 1 304 -7 205 227 30 15 chr1 123654806 123654872 -158538792 + MIR SINE MIR 129 195 -67 229 396 10 10 chr1 123655359 123655455 -158538209 + MIR SINE MIR 17 112 -150 2250 88 7 0 chr1 123655914 123656211 -158537453 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr1 123657539 123657560 -158536104 + GC_rich Low_complexity Low_complexity 1 21 0 218 177 32 48 chr1 123659214 123659276 -158534388 + T-rich Low_complexity Low_complexity 5 65 0 703 206 20 0 chr1 123659918 123660064 -158533600 + AluSg/x SINE Alu 135 283 -29 297 316 52 35 chr1 123660082 123660256 -158533408 - L2 LINE L2 -15 3298 3122 362 316 165 30 chr1 123660554 123660924 -158532740 + L2 LINE L2 2822 3241 -72 1710 171 27 3 chr1 123661145 123661437 -158532227 - AluJb SINE Alu -9 303 5 2212 81 42 0 chr1 123662430 123662713 -158530951 - AluSx SINE Alu -16 296 2 21 0 0 0 chr1 123662714 123662735 -158530929 + AT_rich Low_complexity Low_complexity 1 21 0 804 210 34 20 chr1 123664407 123664621 -158529043 + MIR SINE MIR 41 260 -2 33 0 0 0 chr1 123665018 123665051 -158528613 + AT_rich Low_complexity Low_complexity 1 33 0 2182 118 10 0 chr1 123666678 123666984 -158526680 - AluSx SINE Alu -3 309 1 4697 111 62 16 chr1 123668408 123668539 -158525125 - MER4E LTR ERV1 -5 774 650 2222 108 7 3 chr1 123668539 123668846 -158524818 - AluSc SINE Alu -1 308 1 4697 111 62 16 chr1 123668846 123669454 -158524210 - MER4E LTR ERV1 -129 650 1 2554 145 37 5 chr1 123670267 123670702 -158522962 - L1MA5 LINE L1 0 6300 5852 1210 142 122 0 chr1 123670702 123670907 -158522757 - AluSx SINE Alu -82 230 1 11974 166 32 53 chr1 123670910 123671611 -158522053 - L1MA5 LINE L1 -1011 5135 4421 405 0 0 0 chr1 123671611 123671656 -158522008 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 11974 166 32 53 chr1 123671656 123672902 -158520762 - L1MA5 LINE L1 -1725 4421 3151 224 57 0 29 chr1 123672902 123672937 -158520727 + (TA)n Simple_repeat Simple_repeat 2 35 0 11974 166 32 53 chr1 123672937 123672952 -158520712 - L1MA5 LINE L1 -2995 3151 3137 2073 114 14 7 chr1 123672952 123673241 -158520423 - AluSq SINE Alu -22 291 1 11974 166 32 53 chr1 123673241 123673880 -158519784 - L1MA5 LINE L1 -3009 3137 2585 1278 125 125 24 chr1 123673880 123674088 -158519576 + MER30 DNA MER1_type 1 229 -1 11974 166 32 53 chr1 123674088 123674124 -158519540 - L1MA5 LINE L1 -3561 2585 2550 1063 217 30 0 chr1 123674738 123674941 -158518723 + MER3 DNA MER1_type 1 209 0 1908 115 3 44 chr1 123675463 123675758 -158517906 + AluSx SINE Alu 1 283 -29 186 71 0 0 chr1 123675758 123675786 -158517878 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 588 189 7 63 chr1 123675947 123676090 -158517574 - MER103 DNA DNA -10 156 22 430 305 125 25 chr1 123676183 123676303 -158517361 - L3 LINE CR1 -27 1550 1443 2833 10 0 6 chr1 123676303 123676615 -158517049 - AluYa5 SINE Alu 0 311 2 430 305 125 25 chr1 123676615 123676694 -158516970 - L3 LINE CR1 -134 1443 1331 724 195 122 5 chr1 123677347 123677534 -158516130 + L1MA9 LINE L1 6075 6279 -33 22 0 0 0 chr1 123678801 123678823 -158514841 + AT_rich Low_complexity Low_complexity 1 22 0 583 356 59 25 chr1 123679413 123679888 -158513776 - L2 LINE L2 -404 2910 2420 213 312 133 54 chr1 123679974 123680509 -158513155 - L2 LINE L2 -1211 2103 1527 1341 164 117 29 chr1 123680750 123681024 -158512640 + AluJb SINE Alu 1 298 -14 2047 86 17 27 chr1 123682003 123682321 -158511343 - AluY SINE Alu 0 311 1 2579 53 3 0 chr1 123682445 123682748 -158510916 - AluY SINE Alu -7 304 1 357 246 76 8 chr1 123682919 123683037 -158510627 + MIR3 SINE MIR 83 208 0 22 0 0 0 chr1 123684770 123684792 -158508872 + AT_rich Low_complexity Low_complexity 1 22 0 1349 193 82 21 chr1 123685286 123685566 -158508098 - AluJo SINE Alu -7 305 9 2032 73 0 0 chr1 123685891 123686139 -158507525 - AluY SINE Alu -14 297 50 2010 154 62 0 chr1 123686278 123686602 -158507062 + MER2 DNA MER2_type 1 344 0 478 281 81 0 chr1 123687291 123687451 -158506213 + MIR SINE MIR 74 246 -16 2237 97 7 3 chr1 123689139 123689438 -158504226 - AluSp SINE Alu -13 300 1 21 36 0 0 chr1 123689769 123689797 -158503867 + AT_rich Low_complexity Low_complexity 1 28 0 996 238 127 20 chr1 123690968 123691455 -158502209 - L1MC4a LINE L1 -1637 6171 5633 225 95 24 24 chr1 123692593 123692635 -158501029 - MIR SINE MIR -105 157 116 1019 243 28 12 chr1 123692909 123693156 -158500508 + MIR SINE MIR 3 253 -9 2684 137 51 9 chr1 123693971 123694423 -158499241 - Tigger4(Zombi) DNA MER2_type 0 2731 2261 2829 146 13 13 chr1 123694424 123694876 -158498788 - Tigger4(Zombi) DNA MER2_type -2279 452 1 276 245 142 9 chr1 123697200 123697306 -158496358 - L2 LINE L2 -5 3308 3189 2146 125 0 7 chr1 123698282 123698578 -158495086 + AluSx SINE Alu 1 294 -18 207 304 0 13 chr1 123699869 123699948 -158493716 + (CATA)n Simple_repeat Simple_repeat 2 79 0 1016 227 54 0 chr1 123701242 123701445 -158492219 + MER58A DNA MER1_type 1 214 -10 198 0 0 0 chr1 123702249 123702271 -158491393 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr1 123702353 123702378 -158491286 + AT_rich Low_complexity Low_complexity 1 25 0 337 266 80 9 chr1 123703222 123703338 -158490326 - MIR SINE MIR -79 129 2 280 316 60 26 chr1 123703527 123703644 -158490020 - MER5B DNA MER1_type -32 146 26 184 268 36 0 chr1 123704003 123704059 -158489605 + L3 LINE CR1 1517 1574 -3 337 168 234 73 chr1 123706994 123707131 -158486533 - MIR SINE MIR -41 221 63 2580 41 0 0 chr1 123707293 123707588 -158486076 + AluY SINE Alu 8 302 -9 196 293 0 35 chr1 123707706 123707764 -158485900 + MIR SINE MIR 20 75 -133 1129 271 55 6 chr1 123707788 123708113 -158485551 + MER102b DNA MER1_type 1 341 0 691 289 67 13 chr1 123709304 123709529 -158484135 - MIR SINE MIR -6 256 20 265 339 29 69 chr1 123710035 123710209 -158483455 - L2 LINE L2 -5 3267 3101 480 282 121 39 chr1 123711323 123711529 -158482135 - MIR SINE MIR -30 232 10 267 245 160 21 chr1 123711540 123711634 -158482030 + L2 LINE L2 3203 3309 -4 493 312 104 52 chr1 123712324 123712747 -158480917 + L2 LINE L2 2827 3271 -1 369 222 9 65 chr1 123714207 123714315 -158479349 - MIR SINE MIR -55 207 106 643 265 128 23 chr1 123715515 123715734 -158477930 - MIR SINE MIR -19 243 2 189 220 240 60 chr1 123719391 123719491 -158474173 - MIR SINE MIR -125 137 20 342 0 0 0 chr1 123720106 123720144 -158473520 + (CA)n Simple_repeat Simple_repeat 2 39 0 1870 239 46 20 chr1 123723209 123723708 -158469956 + L1ME3A LINE L1 5652 6163 -7 2297 87 3 20 chr1 123724081 123724381 -158469283 - AluSq SINE Alu -18 295 1 282 274 162 22 chr1 123724658 123724837 -158468827 + MIR SINE MIR 2 205 -57 629 307 59 40 chr1 123725915 123726286 -158467378 + L2 LINE L2 2936 3313 0 259 238 16 0 chr1 123726769 123726832 -158466832 + MLT1L LTR MaLR 496 559 -56 584 216 22 91 chr1 123726832 123727064 -158466600 + MER112 DNA MER1_type 32 247 -13 863 204 37 11 chr1 123727092 123727283 -158466381 + MIR SINE MIR 24 219 -43 186 255 21 0 chr1 123727275 123727322 -158466342 - L2 LINE L2 -552 2762 2715 * 404 131 0 0 chr1 123727530 123727591 -158466073 - L1MC2 LINE L1 -30 6314 6254 2349 62 3 7 chr1 123727691 123727982 -158465682 - AluY SINE Alu -21 290 1 24 53 0 0 chr1 123728558 123728596 -158465068 + AT_rich Low_complexity Low_complexity 1 38 0 187 238 48 0 chr1 123728926 123728968 -158464696 - MIR SINE MIR -117 91 48 4962 118 11 4 chr1 123729560 123730266 -158463398 - MER50 LTR ERV1 -23 711 1 3895 103 34 26 chr1 123730468 123731033 -158462631 - MER61E LTR ERV1 0 569 1 180 0 0 0 chr1 123731068 123731088 -158462576 + (A)n Simple_repeat Simple_repeat 1 20 0 2812 126 61 73 chr1 123731242 123731859 -158461805 + MER4B LTR ERV1 1 779 0 363 23 0 0 chr1 123732207 123732251 -158461413 + (TC)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr1 123733014 123733036 -158460628 + (CA)n Simple_repeat Simple_repeat 2 23 0 846 264 124 47 chr1 123733452 123733986 -158459678 + MLT1L LTR MaLR 41 615 0 1208 252 15 29 chr1 123734045 123734386 -158459278 + L2 LINE L2 2486 2821 -493 1392 283 93 69 chr1 123734387 123734633 -158459031 - L1MEc LINE L1 -5197 1199 960 2293 113 0 0 chr1 123734633 123734926 -158458738 - AluSx SINE Alu -17 295 3 1392 283 93 69 chr1 123734926 123735160 -158458504 - L1MEc LINE L1 -5436 960 733 1748 174 7 13 chr1 123735160 123735459 -158458205 - AluJo SINE Alu -15 297 1 1392 283 93 69 chr1 123735459 123736055 -158457609 - L1MEc LINE L1 -5663 733 96 2416 104 0 0 chr1 123737760 123738068 -158455596 + AluSx SINE Alu 1 308 -4 237 214 83 48 chr1 123738494 123738578 -158455086 + MIR SINE MIR 20 106 -102 1460 222 69 48 chr1 123738593 123739157 -158454507 + L1M4 LINE L1 2131 2706 -3440 273 329 164 7 chr1 123739505 123739645 -158454019 - L2 LINE L2 0 3272 3111 1445 250 82 12 chr1 123740119 123740519 -158453145 + MLT1H LTR MaLR 72 499 -50 508 197 47 84 chr1 123740521 123740923 -158452741 - L1MB2 LINE L1 -1 6170 5825 230 189 19 19 chr1 123741396 123741449 -158452215 + MER103 DNA DNA 113 165 -1 1441 196 32 3 chr1 123741509 123741820 -158451844 - MER33 DNA MER1_type 0 324 5 6282 90 6 37 chr1 123741910 123742242 -158451422 - L1PA12 LINE L1 -15 6153 5812 2477 90 0 0 chr1 123742242 123742552 -158451112 - AluY SINE Alu -1 310 1 6282 90 6 37 chr1 123742552 123743303 -158450361 - L1PA12 LINE L1 -356 5812 5089 439 264 120 42 chr1 123744932 123745148 -158448516 + MIR SINE MIR 3 235 -27 265 197 66 0 chr1 123745567 123745628 -158448036 + MER94 DNA DNA 10 74 -60 30 0 0 0 chr1 123745917 123745947 -158447717 + AT_rich Low_complexity Low_complexity 1 30 0 2163 161 38 3 chr1 123746013 123746386 -158447278 - MLT1B LTR MaLR -4 386 1 1430 210 111 35 chr1 123746434 123746857 -158446807 + MER114 LTR ERV 49 503 -145 18211 145 25 15 chr1 123746991 123749897 -158443767 + L1MA3 LINE L1 12 2946 -4619 8649 173 40 12 chr1 123750506 123752416 -158441248 + L1MA3 LINE L1 2996 5001 -2564 1968 145 148 0 chr1 123752416 123752789 -158440875 - MSTA LTR MaLR 0 428 1 8649 173 40 12 chr1 123752789 123753328 -158440336 + L1MA3 LINE L1 5001 5523 -2042 2310 96 0 13 chr1 123753673 123753975 -158439689 - AluSp SINE Alu -15 298 1 348 113 0 0 chr1 123755008 123755061 -158438603 - Alu SINE Alu 0 301 249 1273 235 34 12 chr1 123755270 123755598 -158438066 - MLT1A1 LTR MaLR -11 354 20 830 220 16 22 chr1 123755767 123755949 -158437715 - AluJb SINE Alu -3 309 129 1476 169 33 76 chr1 123756135 123756437 -158437227 + AluJb SINE Alu 2 290 -22 558 228 55 0 chr1 123758129 123758256 -158435408 - MER94 DNA DNA 0 134 1 366 298 33 8 chr1 123758273 123758394 -158435270 + L2 LINE L2 3149 3272 0 2916 6 0 0 chr1 123758495 123758806 -158434858 + AluYa5 SINE Alu 1 311 0 1955 162 0 10 chr1 123759354 123759656 -158434008 - AluJb SINE Alu -13 299 1 341 208 100 83 chr1 123761316 123761436 -158432228 + LTR16A LTR ERVL 195 360 -90 2008 158 10 0 chr1 123761665 123761969 -158431695 - AluSx SINE Alu -5 307 1 350 248 17 17 chr1 123762042 123762159 -158431505 - MIR SINE MIR -14 248 132 6476 139 29 14 chr1 123763927 123766119 -158427545 + L1MA3 LINE L1 5503 7724 0 21 36 0 0 chr1 123766121 123766149 -158427515 + AT_rich Low_complexity Low_complexity 1 28 0 486 120 65 33 chr1 123766420 123766512 -158427152 - MLT1A1 LTR MaLR -270 95 1 25 31 0 0 chr1 123767376 123767408 -158426256 + AT_rich Low_complexity Low_complexity 1 32 0 232 271 51 0 chr1 123767433 123767492 -158426172 + MER94 DNA DNA 72 133 -1 411 282 58 6 chr1 123768820 123768976 -158424688 + MIR SINE MIR 13 176 -86 922 244 62 0 chr1 123771228 123771470 -158422194 + MIR SINE MIR 1 257 -5 180 323 108 0 chr1 123774343 123774436 -158419228 - L2 LINE L2 -64 3208 3106 1331 107 24 10 chr1 123774436 123774641 -158419023 + L1MA5A LINE L1 6086 6293 -4 501 281 130 5 chr1 123775337 123775522 -158418142 - MIR SINE MIR -8 254 47 319 284 116 7 chr1 123775627 123775782 -158417882 + MIR SINE MIR 80 251 -11 217 345 195 17 chr1 123776436 123776610 -158417054 - L2 LINE L2 -52 3220 3016 374 266 196 0 chr1 123776667 123776810 -158416854 + L2 LINE L2 3101 3271 -1 383 77 0 15 chr1 123778170 123778235 -158415429 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 529 279 62 26 chr1 123778256 123778482 -158415182 + MIR SINE MIR 12 245 -17 6258 12 0 3 chr1 123779397 123780055 -158413609 + SVA Other Other 731 1386 0 1690 233 39 23 chr1 123780055 123780507 -158413157 - MER31B LTR ERV1 -7 536 1 231 228 0 76 chr1 123782355 123782434 -158411230 - MIR SINE MIR -73 189 117 3345 168 29 71 chr1 123782545 123783264 -158410400 - LTR8 LTR ERV1 -2 689 1 3262 105 56 83 chr1 123783550 123784140 -158409524 + MER4B LTR ERV1 1 574 -36 595 301 61 22 chr1 123784885 123785306 -158408358 - L2 LINE L2 -165 3107 2201 300 180 0 140 chr1 123785944 123786044 -158407620 - MIR SINE MIR -56 206 121 1221 291 135 72 chr1 123788526 123789125 -158404539 - MER115 DNA AcHobo -5 688 52 1387 146 9 9 chr1 123789127 123789347 -158404317 + MER58A DNA MER1_type 4 223 -1 202 262 172 35 chr1 123789513 123789658 -158404006 - MIR SINE MIR -73 189 25 859 273 15 26 chr1 123789958 123790222 -158403442 + MIR SINE MIR 2 262 0 947 242 113 4 chr1 123790226 123790482 -158403182 - MER57A LTR ERV1 -2 401 118 225 204 23 0 chr1 123840576 123840620 -158353044 - MER5A DNA MER1_type -83 106 62 6086 148 20 13 chr1 123840623 123841921 -158351743 - L1MA8 LINE L1 0 6291 4981 314 304 46 77 chr1 123842049 123842243 -158351421 + MER5A DNA MER1_type 1 188 -1 183 158 0 197 chr1 123843684 123843760 -158349904 - L2 LINE L2 -3 3269 3209 * 842 226 38 51 chr1 123843731 123843966 -158349698 - MIR SINE MIR -29 233 2 316 336 68 86 chr1 123843973 123844265 -158349399 - L2 LINE L2 -21 3251 2965 650 328 144 23 chr1 123844294 123844816 -158348848 - L2 LINE L2 -465 2849 2265 564 307 129 47 chr1 123844890 123845317 -158348347 - L3 LINE CR1 -93 1484 1023 208 303 41 34 chr1 123845497 123845686 -158347978 + MIR SINE MIR 24 212 -50 235 260 13 13 chr1 123848004 123848081 -158345583 + L2 LINE L2 3190 3266 -6 2317 113 3 0 chr1 123849444 123849753 -158343911 - AluSx SINE Alu -2 310 1 254 250 0 58 chr1 123849819 123849923 -158343741 + LTR67 LTR ERVL 457 554 -3 854 263 83 0 chr1 123849964 123850181 -158343483 - MIR SINE MIR -25 237 3 792 291 169 38 chr1 123850269 123850768 -158342896 - L2 LINE L2 -2 3311 2739 1309 270 93 17 chr1 123851425 123851896 -158341768 + L2 LINE L2 2807 3313 0 706 182 130 22 chr1 123852195 123852391 -158341273 + MER34B LTR ERV1 1 196 -369 347 270 88 36 chr1 123852554 123852691 -158340973 - MIR SINE MIR -111 151 8 248 450 0 0 chr1 123853128 123853239 -158340425 + MER91A DNA MER1_type 86 196 0 442 317 38 16 chr1 123853269 123853452 -158340212 - MIR SINE MIR -10 252 66 873 174 68 32 chr1 123853654 123853873 -158339791 - MER20B DNA MER1_type -47 736 510 2102 231 68 6 chr1 123854240 123855210 -158338454 - L1MB3 LINE L1 -220 6605 5562 * 10765 163 13 10 chr1 123855203 123857406 -158336258 - L1PA12 LINE L1 -2454 5130 2934 387 0 0 0 chr1 123857406 123857449 -158336215 + (TA)n Simple_repeat Simple_repeat 1 43 0 2258 109 3 0 chr1 123857450 123857743 -158335921 - AluSq SINE Alu -19 294 1 10765 163 13 10 chr1 123857743 123858814 -158334850 - L1PA12 LINE L1 -4649 2935 1832 6852 213 37 35 chr1 123858813 123861759 -158331905 - L1MB3 LINE L1 -4325 2464 9 * 286 264 0 0 chr1 123861818 123861871 -158331793 - Tigger3(Golem) DNA MER2_type -2975 54 2 3163 128 73 39 chr1 123862188 123862744 -158330920 + L1M3f LINE L1 608 1189 -4139 2185 120 0 3 chr1 123862744 123863043 -158330621 + AluSx SINE Alu 11 308 -4 3163 128 73 39 chr1 123863043 123863103 -158330561 + L1M3f LINE L1 1189 1245 -4083 * 44157 39 3 3 chr1 123863101 123869252 -158324412 + L1PA3 LINE L1 3 6155 0 485 206 53 94 chr1 123869358 123869528 -158324136 + MIR SINE MIR 46 208 -54 1747 225 28 2 chr1 123869772 123870195 -158323469 + L1M3f LINE L1 1216 1649 -4679 247 197 164 0 chr1 123870195 123870256 -158323408 + MLT1J2 LTR MaLR 98 168 -282 3459 164 29 2 chr1 123870363 123870923 -158322741 - L1M3f LINE L1 -4751 577 3 280 250 36 18 chr1 123870919 123871031 -158322633 - L1MEd LINE L1 -5111 1008 895 * 22 35 0 0 chr1 123871102 123871131 -158322533 + AT_rich Low_complexity Low_complexity 1 29 0 1868 155 18 24 chr1 123872683 123873066 -158320598 + Tigger3(Golem) DNA MER2_type 1 3029 0 598 264 83 21 chr1 123873287 123873480 -158320184 - MER20B DNA MER1_type -572 211 7 323 223 80 36 chr1 123873764 123873876 -158319788 - MIR SINE MIR -36 226 110 207 152 0 0 chr1 123875491 123875537 -158318127 + T-rich Low_complexity Low_complexity 1 46 0 266 324 74 34 chr1 123876708 123876856 -158316808 - L2 LINE L2 -2 3311 3158 559 227 8 8 chr1 123876867 123876986 -158316678 + MER94 DNA DNA 1 119 -15 589 279 137 28 chr1 123877000 123877300 -158316364 - L2 LINE L2 -183 3130 2791 202 308 128 15 chr1 123877334 123877467 -158316197 - MIR3 SINE MIR -15 193 46 198 0 0 0 chr1 123877569 123877591 -158316073 + (CTTTG)n Simple_repeat Simple_repeat 5 26 0 200 273 182 17 chr1 123878327 123878469 -158315195 - MIR SINE MIR -70 192 18 723 281 83 9 chr1 123878515 123878743 -158314921 + MIR SINE MIR 17 261 -1 200 287 52 52 chr1 123878780 123878895 -158314769 - L2 LINE L2 -1 3312 3198 180 0 0 0 chr1 123879045 123879065 -158314599 + (T)n Simple_repeat Simple_repeat 1 20 0 290 282 26 0 chr1 123879772 123879850 -158313814 - L2 LINE L2 -10 3303 3224 2217 106 0 7 chr1 123881962 123882265 -158311399 - AluSg SINE Alu -9 301 1 16465 122 18 19 chr1 123882632 123885054 -158308610 - Tigger1 DNA MER2_type 0 2418 1 25 31 0 0 chr1 123885695 123885727 -158307937 + AT_rich Low_complexity Low_complexity 1 32 0 183 364 0 15 chr1 123885854 123885920 -158307744 - MIR SINE MIR -193 69 5 371 330 62 0 chr1 123885981 123886175 -158307489 + MIR SINE MIR 1 206 -56 243 244 33 0 chr1 123886338 123886428 -158307236 + (TTATA)n Simple_repeat Simple_repeat 4 96 0 6263 126 17 12 chr1 123887599 123888558 -158305106 - LTR5 LTR ERVK -1 968 6 2207 116 3 3 chr1 123888882 123889176 -158304488 - AluSq SINE Alu -19 294 1 4615 56 36 25 chr1 123889218 123889293 -158304371 - L1PA6 LINE L1 -1 6153 6080 3554 198 33 54 chr1 123889293 123890262 -158303402 - LTR5 LTR ERVK 0 969 21 4615 56 36 25 chr1 123890262 123890790 -158302874 - L1PA6 LINE L1 -74 6080 5543 780 278 202 6 chr1 123891859 123892186 -158301478 + L2 LINE L2 2921 3311 -2 243 208 31 62 chr1 123892238 123892334 -158301330 + LTR67 LTR ERVL 459 551 -6 3553 124 26 0 chr1 123892448 123892948 -158300716 - LTR10D LTR ERV1 0 513 1 264 341 92 12 chr1 123895344 123895517 -158298147 - MER117 DNA MER1_type -6 191 5 256 227 50 151 chr1 123895652 123895890 -158297774 - MIR SINE MIR -47 215 2 466 223 19 10 chr1 123896068 123896171 -158297493 + MIR3 SINE MIR 86 189 -19 252 281 0 0 chr1 123896228 123896292 -158297372 + GA-rich Low_complexity Low_complexity 4 67 0 243 0 0 0 chr1 123897508 123897535 -158296129 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2000 153 107 18 chr1 123897853 123898245 -158295419 + MSTA LTR MaLR 2 428 0 190 222 0 0 chr1 123898268 123898313 -158295351 + L2 LINE L2 3269 3313 0 1759 184 81 28 chr1 123898372 123898731 -158294933 - MLT1F LTR MaLR -2 540 163 241 208 0 0 chr1 123898780 123898828 -158294836 - L2 LINE L2 -87 3185 3138 225 167 130 19 chr1 123898963 123899017 -158294647 + L2 LINE L2 3197 3256 -16 25 31 0 0 chr1 123899835 123899867 -158293797 + AT_rich Low_complexity Low_complexity 1 32 0 13232 136 168 31 chr1 123899882 123901549 -158292115 + L1MA3 LINE L1 16 2133 -5432 2038 133 0 31 chr1 123901549 123901871 -158291793 - AluSx SINE Alu 0 312 1 13232 136 168 31 chr1 123901871 123902667 -158290997 + L1MA3 LINE L1 2133 2818 -4747 12578 154 59 6 chr1 123902662 123906214 -158287450 + L1MA3 LINE L1 3978 7724 0 * 2379 181 46 123 chr1 123906724 123907447 -158286217 - L1PB2 LINE L1 -2 6149 5483 2471 68 10 0 chr1 123907649 123907957 -158285707 - AluY SINE Alu 0 311 1 220 206 56 112 chr1 123912756 123912863 -158280801 + L2 LINE L2 3153 3253 -19 254 256 83 77 chr1 123912872 123913028 -158280636 - L2 LINE L2 -24 3289 3133 421 261 161 84 chr1 123913112 123913373 -158280291 - L2 LINE L2 -5 3267 2987 489 279 70 65 chr1 123913872 123914028 -158279636 + MIR SINE MIR 46 205 -57 2142 124 0 3 chr1 123914028 123914326 -158279338 + AluSx SINE Alu 1 297 -15 489 279 70 65 chr1 123914326 123914370 -158279294 + MIR SINE MIR 205 247 -15 313 303 50 25 chr1 123915335 123915479 -158278185 + MIR SINE MIR 4 151 -62 2406 76 0 3 chr1 123915709 123916010 -158277654 - AluY SINE Alu -11 300 1 548 276 74 42 chr1 123916700 123916917 -158276747 + L3 LINE CR1 1175 1398 -179 288 0 0 0 chr1 123918177 123918209 -158275455 + (CA)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr1 123918209 123918233 -158275431 + (CCA)n Simple_repeat Simple_repeat 3 26 0 435 206 21 10 chr1 123918391 123918488 -158275176 + MIR3 SINE MIR 93 190 -18 205 237 0 0 chr1 123920163 123920201 -158273463 + polypyrimidine Low_complexity Low_complexity 2 39 0 189 298 43 32 chr1 123920425 123920519 -158273145 - L2 LINE L2 -224 3089 2995 258 288 0 38 chr1 123921435 123921515 -158272149 - MIR SINE MIR -151 111 35 31643 83 6 4 chr1 123921642 123927770 -158265894 + L1PA6 LINE L1 11 6148 -6 188 309 18 0 chr1 123928371 123928426 -158265238 + L2 LINE L2 3252 3307 -6 248 148 19 19 chr1 123928508 123928562 -158265102 - HSMAR1 DNA Mariner 0 1287 1234 2341 85 14 0 chr1 123929652 123929947 -158263717 - AluSq SINE Alu -14 299 1 2086 126 3 3 chr1 123931407 123931708 -158261956 - AluSq SINE Alu -12 301 1 224 200 0 0 chr1 123931853 123931893 -158261771 + (TG)n Simple_repeat Simple_repeat 2 41 0 260 143 130 78 chr1 123931967 123932044 -158261620 + MLT1K LTR MaLR 506 586 -2 478 290 20 46 chr1 123932051 123932205 -158261459 - MIR SINE MIR -75 133 2 813 265 29 34 chr1 123932604 123932703 -158260961 + MIR SINE MIR 3 101 -161 2041 171 55 0 chr1 123932703 123933031 -158260633 - MER7A DNA MER2_type -2 344 1 813 265 29 34 chr1 123933031 123933169 -158260495 + MIR SINE MIR 101 239 -23 349 244 84 17 chr1 123933230 123933349 -158260315 - LTR16C LTR ERVL 0 491 365 731 256 128 33 chr1 123933730 123934132 -158259532 + L1M4 LINE L1 4786 5233 -913 1025 191 102 30 chr1 123934143 123934379 -158259285 + LTR41 LTR ERVL 9 261 -512 1285 184 58 11 chr1 123934882 123935159 -158258505 + L1M4 LINE L1 5313 5602 -572 846 288 172 12 chr1 123935175 123935698 -158257966 - L2 LINE L2 -186 3127 2525 4504 197 27 32 chr1 123935703 123936716 -158256948 - L1MC4a LINE L1 -206 7602 6595 42 20 0 0 chr1 123936747 123936796 -158256868 + AT_rich Low_complexity Low_complexity 1 49 0 946 196 46 51 chr1 123936796 123937133 -158256531 - L1MC4a LINE L1 -1189 6619 6410 * 6531 147 13 17 chr1 123937128 123938696 -158254968 + L1PA14 LINE L1 4130 5687 -474 1423 164 0 4 chr1 123938726 123938957 -158254707 + AluJb SINE Alu 70 299 -13 3225 109 2 40 chr1 123938959 123939113 -158254551 + L1PA14 LINE L1 5675 5833 -328 2562 55 0 3 chr1 123939113 123939422 -158254242 + AluY SINE Alu 1 308 -3 3225 109 2 40 chr1 123939422 123939764 -158253900 + L1PA14 LINE L1 5833 6152 -9 1013 191 30 26 chr1 123939779 123940010 -158253654 - L1MC4a LINE L1 -1390 6418 6187 189 0 0 0 chr1 123940115 123940136 -158253528 + (TATG)n Simple_repeat Simple_repeat 4 24 0 856 241 140 54 chr1 123940476 123940883 -158252781 + LTR40b LTR ERVL 13 454 -8 1174 171 38 14 chr1 123941264 123941475 -158252189 - AluJb SINE Alu -10 302 87 185 319 75 0 chr1 123943704 123943798 -158249866 + MIR3 SINE MIR 103 203 -5 255 252 185 0 chr1 123943894 123944029 -158249635 - MIR SINE MIR -3 259 100 371 278 118 56 chr1 123944423 123944567 -158249097 + MIR SINE MIR 2 154 -108 2043 136 3 18 chr1 123944603 123944935 -158248729 + L1MB3 LINE L1 5834 6160 -23 250 333 13 0 chr1 123944962 123945037 -158248627 + MIR SINE MIR 185 260 -2 206 284 45 30 chr1 123945222 123945289 -158248375 - MIR SINE MIR -120 88 21 266 244 12 58 chr1 123945314 123945400 -158248264 + MIR SINE MIR 67 148 -60 717 217 79 83 chr1 123945427 123945497 -158248167 - LTR40a LTR ERVL -7 512 443 279 114 0 0 chr1 123945497 123945541 -158248123 + (CA)n Simple_repeat Simple_repeat 2 45 0 717 217 79 83 chr1 123945541 123945791 -158247873 - LTR40a LTR ERVL -76 443 136 238 241 58 73 chr1 123945846 123945983 -158247681 + LTR68 LTR ERV1 606 740 0 239 184 0 0 chr1 123945983 123946021 -158247643 + MIR3 SINE MIR 159 196 -12 201 244 0 110 chr1 123946495 123946577 -158247087 + L2 LINE L2 2539 2611 -703 206 362 85 11 chr1 123946675 123946769 -158246895 + MER5A DNA MER1_type 89 189 0 220 322 34 40 chr1 123948372 123948549 -158245115 + L2 LINE L2 2921 3096 -176 624 167 18 71 chr1 123948657 123948825 -158244839 + L1MC5 LINE L1 7751 7909 -52 418 308 62 10 chr1 123949925 123950120 -158243544 - MIR SINE MIR -21 241 37 234 254 64 18 chr1 123951857 123951967 -158241697 + MIR SINE MIR 25 139 -69 249 343 9 9 chr1 123953398 123953506 -158240158 + GA-rich Low_complexity Low_complexity 1 108 0 490 254 35 0 chr1 123953627 123953741 -158239923 - L2 LINE L2 -8 3305 3188 430 304 148 52 chr1 123953841 123954246 -158239418 - L2 LINE L2 -12 3260 2817 365 210 319 29 chr1 123955251 123955389 -158238275 - MER5B DNA MER1_type 0 178 1 501 17 0 0 chr1 123955678 123955736 -158237928 + (CA)n Simple_repeat Simple_repeat 2 59 0 592 314 24 5 chr1 123956014 123956221 -158237443 + MIR SINE MIR 52 262 0 379 270 26 9 chr1 123956414 123956529 -158237135 - Charlie8 DNA MER1_type -2177 240 124 405 0 0 0 chr1 123956664 123956709 -158236955 + (TA)n Simple_repeat Simple_repeat 1 45 0 202 261 348 0 chr1 123957112 123957204 -158236460 - L2 LINE L2 -1 3271 3148 353 376 63 24 chr1 123958385 123958590 -158235074 + L3 LINE CR1 401 613 -964 397 246 117 84 chr1 123958861 123959040 -158234624 + L1ME LINE L1 5613 5797 -324 864 203 66 6 chr1 123959057 123959230 -158234434 + MER20 DNA MER1_type 1 184 -35 451 129 0 0 chr1 123959230 123959292 -158234372 - Tigger5 DNA MER2_type 0 2323 2262 1882 67 0 0 chr1 123959300 123959525 -158234139 + L1PA8 LINE L1 5941 6165 -7 293 224 0 0 chr1 123959530 123959588 -158234076 + Tigger5 DNA MER2_type 2262 2319 -4 380 227 0 0 chr1 123959632 123959698 -158233966 - Tigger5 DNA MER2_type -2257 66 1 235 245 0 0 chr1 123960219 123960268 -158233396 + MIR3 SINE MIR 148 196 -12 1732 159 17 17 chr1 123961350 123961639 -158232025 + AluJo SINE Alu 1 289 -23 2545 321 55 30 chr1 123961671 123962339 -158231325 + ERVL LTR ERVL 1599 2249 -3515 188 67 33 0 chr1 123962339 123962369 -158231295 + (TG)n Simple_repeat Simple_repeat 2 32 0 2545 321 55 30 chr1 123962369 123962399 -158231265 + ERVL LTR ERVL 2249 2277 -3487 243 0 0 0 chr1 123962399 123962426 -158231238 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2545 321 55 30 chr1 123962426 123962881 -158230783 + ERVL LTR ERVL 2277 2781 -2983 1195 334 40 32 chr1 123962876 123963558 -158230106 + ERVL LTR ERVL 4722 5408 -356 * 250 248 132 23 chr1 123964035 123964164 -158229500 + LTR33 LTR ERVL 359 501 -20 322 136 68 0 chr1 123964175 123964234 -158229430 + L1MA9 LINE L1 6228 6290 -22 1796 144 20 17 chr1 123964235 123964527 -158229137 - AluJb SINE Alu -19 293 1 432 269 248 0 chr1 123964814 123964963 -158228701 - MER5A DNA MER1_type 0 189 4 1268 158 73 4 chr1 123965002 123965249 -158228415 + L1MB3 LINE L1 5894 6157 -26 2074 99 67 0 chr1 123967162 123967444 -158226220 + AluSq SINE Alu 1 301 -12 199 286 67 59 chr1 123969439 123969558 -158224106 - MIR3 SINE MIR -46 162 43 419 230 267 0 chr1 123970658 123970819 -158222845 + MIR SINE MIR 10 213 -49 705 260 224 4 chr1 123972312 123972562 -158221102 + Charlie2 DNA MER1_type 2 306 -2556 741 206 20 49 chr1 123972738 123972942 -158220722 + Charlie2a DNA MER1_type 1470 1667 -1195 601 211 75 0 chr1 123972945 123973078 -158220586 + Charlie2a DNA MER1_type 2720 2862 0 929 119 8 8 chr1 123973352 123973486 -158220178 + AluJo SINE Alu 1 134 -178 1953 131 7 10 chr1 123973648 123973946 -158219718 - AluSx SINE Alu -15 297 1 881 65 19 0 chr1 123974672 123974779 -158218885 + HY1 scRNA scRNA 1 109 -3 201 255 0 0 chr1 123974784 123974831 -158218833 + GA-rich Low_complexity Low_complexity 4 50 0 251 241 214 18 chr1 123978184 123978296 -158215368 - L2 LINE L2 0 3313 3180 440 241 278 5 chr1 123978305 123978492 -158215172 + MIR SINE MIR 12 249 -13 998 291 263 15 chr1 123978776 123979448 -158214216 + L2 LINE L2 2454 3301 -12 1465 137 60 70 chr1 123979709 123980009 -158213655 + AluJb SINE Alu 1 297 -15 1798 139 23 40 chr1 123980160 123980461 -158213203 + AluSg SINE Alu 1 296 -14 222 239 104 30 chr1 123980462 123980529 -158213135 - L2 LINE L2 -668 2646 2575 1020 204 18 44 chr1 123980583 123980808 -158212856 + MER20 DNA MER1_type 1 219 0 311 299 119 79 chr1 123980811 123981189 -158212475 + L3 LINE CR1 661 1053 -524 247 185 37 0 chr1 123981176 123981230 -158212434 + L2 LINE L2 3258 3313 0 * 209 306 74 74 chr1 123981230 123981338 -158212326 + L3 LINE CR1 1051 1158 -419 266 328 69 35 chr1 123981392 123981566 -158212098 + L3 LINE CR1 1317 1496 -81 * 707 248 77 39 chr1 123981559 123981793 -158211871 - MIR SINE MIR -1 261 19 192 286 43 29 chr1 123981816 123981886 -158211778 + L3 LINE CR1 1457 1527 -50 1549 128 60 14 chr1 123982297 123982613 -158211051 - AluJb SINE Alu 0 312 4 487 266 82 11 chr1 123982745 123982929 -158210735 - L2 LINE L2 -19 3294 3098 201 298 170 0 chr1 123983679 123983820 -158209844 - MIR SINE MIR -96 166 2 241 338 120 39 chr1 123984699 123984933 -158208731 + L3 LINE CR1 1176 1428 -149 788 205 19 12 chr1 123985026 123985187 -158208477 + AluJb SINE Alu 123 284 -28 264 30 0 0 chr1 123985187 123985220 -158208444 + (CA)n Simple_repeat Simple_repeat 2 34 0 243 293 104 55 chr1 123985527 123985691 -158207973 + MER5A DNA MER1_type 14 185 -4 438 271 64 83 chr1 123985876 123986094 -158207570 - L2 LINE L2 -3 3310 3097 896 101 34 0 chr1 123986098 123986217 -158207447 + AluJb SINE Alu 1 123 -189 719 302 48 9 chr1 123986222 123986554 -158207110 - L2 LINE L2 -226 3087 2739 720 278 79 4 chr1 123986638 123986865 -158206799 + MIR SINE MIR 19 262 0 1896 159 3 0 chr1 123987757 123988053 -158205611 + AluJo SINE Alu 1 297 -15 2170 116 0 3 chr1 123989492 123989793 -158203871 + AluSx SINE Alu 1 300 -12 2183 169 61 8 chr1 123989806 123990314 -158203350 + L1MB3 LINE L1 5472 6169 -14 181 233 181 26 chr1 123990621 123990737 -158202927 - L2 LINE L2 -4 3309 3176 798 210 230 8 chr1 123990843 123991091 -158202573 - MLT2F LTR ERVL -7 656 354 672 170 104 0 chr1 123991214 123991349 -158202315 - MLT2F LTR ERVL -514 149 1 30 0 0 0 chr1 123991587 123991617 -158202047 + AT_rich Low_complexity Low_complexity 1 30 0 2084 92 0 0 chr1 123991620 123991892 -158201772 - AluY SINE Alu -3 308 37 189 177 25 89 chr1 123991933 123992012 -158201652 + L3b LINE CR1 1313 1386 -197 309 291 100 71 chr1 123992431 123992758 -158200906 - L2 LINE L2 -171 3101 2748 415 206 28 92 chr1 123992815 123992956 -158200708 - MER58C DNA MER1_type -5 210 79 301 335 158 21 chr1 123992959 123993479 -158200185 - L2 LINE L2 -658 2656 2066 373 244 79 24 chr1 123993479 123993643 -158200021 - L1MEc LINE L1 -3225 2990 2818 1202 152 76 31 chr1 123993662 123993970 -158199694 + MER58B DNA MER1_type 1 341 0 690 302 58 49 chr1 123993992 123994667 -158198997 - L1MEc LINE L1 -3435 2780 2144 476 272 49 88 chr1 123994740 123994857 -158198807 - L1MEc LINE L1 -5053 1152 1032 1255 201 28 113 chr1 123994857 123995256 -158198408 - MLT1A1 LTR MaLR 0 365 1 476 272 49 88 chr1 123995256 123995627 -158198037 - L1MEc LINE L1 -5173 1032 683 2542 235 52 28 chr1 123995803 123996382 -158197282 + MLT1E LTR MaLR 1 593 0 227 244 84 59 chr1 123996434 123996553 -158197111 - L1MEc LINE L1 -5768 437 316 653 277 58 52 chr1 123996809 123997156 -158196508 + L2 LINE L2 1900 2248 -1066 724 142 18 0 chr1 123997248 123997361 -158196303 + FLAM_A SINE Alu 28 142 0 391 286 47 57 chr1 123997367 123997657 -158196007 - MLT1J2 LTR MaLR -40 410 80 329 321 159 45 chr1 123997719 123998440 -158195224 + L2 LINE L2 2250 3054 -218 312 323 102 8 chr1 123998588 123998715 -158194949 + L2 LINE L2 3134 3272 0 439 335 50 79 chr1 123998825 123999604 -158194060 + L2 LINE L2 2516 3272 0 184 365 0 0 chr1 123999614 123999688 -158193976 + L2 LINE L2 2424 2497 -817 198 0 0 0 chr1 123999998 124000020 -158193644 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 763 213 7 0 chr1 124000022 124000158 -158193506 - FRAM SINE Alu -42 134 1 435 269 77 49 chr1 124000342 124000628 -158193036 + L2 LINE L2 2943 3236 -77 2233 122 6 0 chr1 124000676 124000987 -158192677 + AluSp SINE Alu 1 313 0 33 25 0 0 chr1 124001043 124001083 -158192581 + AT_rich Low_complexity Low_complexity 1 40 0 2490 50 0 7 chr1 124001410 124001708 -158191956 + AluY SINE Alu 1 296 -15 21 36 0 0 chr1 124002419 124002447 -158191217 + AT_rich Low_complexity Low_complexity 1 28 0 436 278 60 43 chr1 124002888 124003169 -158190495 + L1ME4a LINE L1 5649 5934 -187 313 311 40 33 chr1 124006526 124006677 -158186987 + MIR SINE MIR 50 201 -61 906 296 78 40 chr1 124006911 124007921 -158185743 + L1MC4a LINE L1 4599 5650 -743 903 229 75 9 chr1 124007982 124008209 -158185455 - MIR SINE MIR -13 249 8 316 281 173 0 chr1 124008211 124008350 -158185314 + L1MC4a LINE L1 5707 5869 -1939 1697 199 0 0 chr1 124008969 124009251 -158184413 + AluJo SINE Alu 3 284 -28 308 330 7 65 chr1 124009264 124009425 -158184239 - MIR SINE MIR -73 135 4 270 0 0 0 chr1 124009562 124009592 -158184072 + (A)n Simple_repeat Simple_repeat 1 30 0 218 328 43 43 chr1 124012063 124012179 -158181485 + L2 LINE L2 3104 3219 -53 286 179 67 3 chr1 124012238 124012314 -158181350 - MIR SINE MIR -61 147 68 552 68 0 14 chr1 124012960 124013033 -158180631 + AluSc SINE Alu 177 248 -61 979 181 5 25 chr1 124013033 124013232 -158180432 + AluJo SINE Alu 85 279 -33 268 203 27 54 chr1 124014197 124014271 -158179393 + LTR67 LTR ERVL 478 549 -8 738 313 10 0 chr1 124014655 124014847 -158178817 + MER91A DNA MER1_type 1 194 -2 2031 132 0 3 chr1 124015690 124015979 -158177685 - AluJb SINE Alu -24 288 1 800 77 10 0 chr1 124016102 124016206 -158177458 - AluSg/x SINE Alu -17 292 188 240 111 0 0 chr1 124016907 124016943 -158176721 + (CA)n Simple_repeat Simple_repeat 2 37 0 2025 175 12 45 chr1 124017037 124017438 -158176226 + MLT1B LTR MaLR 1 388 -2 338 299 73 37 chr1 124017886 124018037 -158175627 - MIR SINE MIR -62 146 34 788 125 0 0 chr1 124018191 124018295 -158175369 - U6 snRNA snRNA 0 107 4 249 308 0 39 chr1 124019420 124019498 -158174166 + MER91A DNA MER1_type 115 195 -1 477 160 175 60 chr1 124019563 124019763 -158173901 + L1MC5 LINE L1 7460 7682 -279 951 214 71 13 chr1 124019783 124020233 -158173431 + MLT1F LTR MaLR 39 567 0 2453 80 0 0 chr1 124020408 124020708 -158172956 + AluSg SINE Alu 1 300 -10 514 273 37 50 chr1 124020864 124021050 -158172614 + L1MC5 LINE L1 7697 7881 -80 2562 154 30 23 chr1 124021050 124021479 -158172185 + MSTB1 LTR MaLR 1 432 0 514 273 37 50 chr1 124021479 124021534 -158172130 + L1MC5 LINE L1 7881 7935 -26 380 188 12 12 chr1 124021559 124021639 -158172025 - MIR SINE MIR -108 154 75 1100 177 79 0 chr1 124021871 124022086 -158171578 + MER89 LTR ERV1 3 234 -325 6021 140 62 31 chr1 124022086 124024038 -158169626 + L1PA14 LINE L1 4137 6157 -4 24 0 0 0 chr1 124024039 124024063 -158169601 + AT_rich Low_complexity Low_complexity 1 24 0 1867 167 3 42 chr1 124024074 124024277 -158169387 + MER89 LTR ERV1 221 406 -153 1870 160 98 15 chr1 124024277 124024614 -158169050 + MER93b LTR ERV1 5 369 -4 1867 167 3 42 chr1 124024614 124024763 -158168901 + MER89 LTR ERV1 406 559 0 2547 44 0 0 chr1 124024991 124025284 -158168380 - AluY SINE Alu -18 293 1 212 222 0 16 chr1 124025522 124025585 -158168079 + GA-rich Low_complexity Low_complexity 2 63 0 741 259 81 30 chr1 124026476 124026678 -158166986 + MIR SINE MIR 33 246 -16 1887 162 6 22 chr1 124026678 124026993 -158166671 + AluJb SINE Alu 1 310 -2 587 252 171 9 chr1 124029367 124029589 -158164075 - MIR SINE MIR 0 262 5 272 313 131 0 chr1 124029585 124029684 -158163980 - MIR SINE MIR -125 137 26 * 412 120 55 34 chr1 124029866 124030384 -158163280 + (TA)n Simple_repeat Simple_repeat 1 529 0 222 37 0 0 chr1 124032999 124033026 -158160638 + (A)n Simple_repeat Simple_repeat 1 27 0 394 338 182 9 chr1 124033815 124034155 -158159509 + L2 LINE L2 2870 3268 -4 551 294 108 15 chr1 124034232 124034436 -158159228 - MIR SINE MIR -18 244 22 299 164 16 0 chr1 124034772 124034833 -158158831 + (TA)n Simple_repeat Simple_repeat 2 63 0 330 289 0 0 chr1 124034833 124034923 -158158741 + L1MC4 LINE L1 6614 6703 -1339 265 267 47 0 chr1 124034847 124034933 -158158731 - L1MC4 LINE L1 -1339 6703 6614 * 751 172 9 0 chr1 124035016 124035132 -158158532 + FLAM_C SINE Alu 2 118 -25 33 0 0 0 chr1 124035132 124035165 -158158499 + AT_rich Low_complexity Low_complexity 1 33 0 2281 61 0 0 chr1 124036690 124036988 -158156676 + AluSg SINE Alu 2 299 0 623 274 65 10 chr1 124037652 124037853 -158155811 - MIR SINE MIR -31 231 20 185 442 87 0 chr1 124039048 124039152 -158154512 + L2 LINE L2 3097 3209 -63 216 0 0 0 chr1 124039549 124039573 -158154091 + (CA)n Simple_repeat Simple_repeat 2 25 0 272 300 200 0 chr1 124040322 124040456 -158153208 + MIR SINE MIR 64 226 -36 185 320 39 0 chr1 124042030 124042108 -158151556 - MIR3 SINE MIR -19 189 109 1364 174 30 70 chr1 124042143 124042441 -158151223 + AluJo SINE Alu 7 292 -20 225 0 0 0 chr1 124042518 124042543 -158151121 + (CA)n Simple_repeat Simple_repeat 2 26 0 428 248 34 64 chr1 124042740 124042900 -158150764 - MIR SINE MIR -58 150 31 205 245 0 0 chr1 124044906 124044955 -158148709 + CT-rich Low_complexity Low_complexity 1 49 0 492 280 40 51 chr1 124045415 124045590 -158148074 + MIR SINE MIR 20 192 -70 631 272 71 0 chr1 124045839 124046008 -158147656 - MIR SINE MIR -78 184 4 1286 170 4 48 chr1 124046208 124046437 -158147227 - MER20 DNA MER1_type 0 219 1 310 333 9 19 chr1 124046441 124046549 -158147115 - MIR SINE MIR -128 134 28 266 0 29 0 chr1 124046794 124046828 -158146836 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2272 88 0 0 chr1 124046830 124047113 -158146551 - AluSx SINE Alu -29 283 1 2298 109 7 0 chr1 124047563 124047867 -158145797 - AluSx SINE Alu -6 306 1 598 213 160 27 chr1 124048507 124048695 -158144969 - MER112 DNA MER1_type -6 254 42 4945 231 89 73 chr1 124048714 124050393 -158143271 - L1ME2 LINE L1 -9 6224 4573 2383 81 0 3 chr1 124050393 124050690 -158142974 - AluSg SINE Alu -14 296 1 4945 231 89 73 chr1 124050690 124051894 -158141770 - L1ME2 LINE L1 -1660 4573 3389 2562 74 0 0 chr1 124051894 124052203 -158141461 - AluY SINE Alu -2 309 1 4945 231 89 73 chr1 124052203 124052502 -158141162 - L1ME2 LINE L1 -2844 3389 3096 2028 144 0 0 chr1 124052502 124052794 -158140870 - AluSx SINE Alu -20 292 1 4945 231 89 73 chr1 124052794 124053456 -158140208 - L1ME2 LINE L1 -3137 3096 2337 2062 124 3 3 chr1 124053456 124053762 -158139902 + AluSx SINE Alu 1 306 0 4945 231 89 73 chr1 124053762 124053972 -158139692 - L1ME2 LINE L1 -3896 2337 2132 * 6144 173 21 42 chr1 124053966 124054080 -158139584 - L1MC1 LINE L1 0 6333 6218 2859 95 8 16 chr1 124054080 124054458 -158139206 + THE1C LTR MaLR 1 375 0 6144 173 21 42 chr1 124054458 124054881 -158138783 - L1MC1 LINE L1 -115 6218 5788 2385 102 0 3 chr1 124054881 124055186 -158138478 - AluSx SINE Alu -8 304 1 6144 173 21 42 chr1 124055186 124056952 -158136712 - L1MC1 LINE L1 -545 5788 4078 42 65 0 0 chr1 124056957 124057034 -158136630 + AT_rich Low_complexity Low_complexity 1 77 0 6415 25 12 4 chr1 124057243 124057966 -158135698 - SVA Other Other -1 1385 657 4799 218 84 72 chr1 124057968 124058919 -158134745 - L1ME2 LINE L1 -4248 2148 1210 1576 170 4 0 chr1 124058919 124059172 -158134492 + AluJb SINE Alu 50 303 -9 4799 218 84 72 chr1 124059172 124059598 -158134066 - L1ME2 LINE L1 -5186 1210 791 730 197 31 0 chr1 124059598 124059725 -158133939 - FLAM_A SINE Alu -2 131 1 4799 218 84 72 chr1 124059725 124060188 -158133476 - L1ME2 LINE L1 -5605 791 284 883 127 0 0 chr1 124060382 124060500 -158133164 + FLAM_C SINE Alu 1 118 -15 1900 157 3 3 chr1 124061429 124061728 -158131936 - AluJb SINE Alu -13 299 1 1047 226 44 12 chr1 124061728 124061980 -158131684 + MIR SINE MIR 3 262 0 212 211 14 0 chr1 124062607 124062678 -158130986 + (TG)n Simple_repeat Simple_repeat 1 72 0 563 293 101 5 chr1 124062894 124063092 -158130572 + MIR SINE MIR 45 261 -1 264 244 56 22 chr1 124064152 124064242 -158129422 - MIR3 SINE MIR -7 201 109 208 245 0 0 chr1 124064612 124064665 -158128999 - L2 LINE L2 0 3272 3220 297 300 128 62 chr1 124064969 124065242 -158128422 + L2 LINE L2 2974 3264 -8 1309 133 10 5 chr1 124066973 124067169 -158126495 - L1PA16 LINE L1 -9 6157 5961 2282 110 0 0 chr1 124067170 124067470 -158126194 - AluSc SINE Alu -9 300 1 208 408 39 0 chr1 124067624 124067754 -158125910 - L2 LINE L2 -600 2714 2580 33 56 0 0 chr1 124067913 124067967 -158125697 + AT_rich Low_complexity Low_complexity 1 54 0 2728 214 67 22 chr1 124067998 124068625 -158125039 + MLT2F LTR ERVL 1 655 -8 1116 167 8 132 chr1 124068831 124069082 -158124582 - MER58A DNA MER1_type -4 220 1 433 299 19 13 chr1 124069126 124069283 -158124381 + ERVL-F LTR ERVL 282 439 -5325 310 319 72 61 chr1 124069367 124069743 -158123921 - L2 LINE L2 -953 2361 1982 2141 127 0 13 chr1 124070559 124070875 -158122789 - AluSx SINE Alu 0 312 1 198 128 0 0 chr1 124070980 124071019 -158122645 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 124071147 124071168 -158122496 + AT_rich Low_complexity Low_complexity 1 21 0 430 217 22 0 chr1 124071279 124071371 -158122293 + L2 LINE L2 2657 2750 -564 699 184 0 0 chr1 124071475 124071616 -158122048 + GA-rich Low_complexity Low_complexity 3 143 0 198 320 20 82 chr1 124071942 124072089 -158121575 + L2 LINE L2 2340 2477 -837 2272 159 93 30 chr1 124072099 124072572 -158121092 - L1MB7 LINE L1 -20 6662 6160 3886 198 10 5 chr1 124072995 124074100 -158119564 - L1MB7 LINE L1 -519 6159 5049 4485 127 4 37 chr1 124074142 124074869 -158118795 - L1MB3 LINE L1 -36 6147 5445 4421 232 16 59 chr1 124074873 124075324 -158118340 - L1MB7 LINE L1 -1725 4919 4450 8532 104 27 12 chr1 124075324 124075879 -158117785 - HSMAR2 DNA Mariner 0 1302 757 2056 130 0 0 chr1 124075879 124076194 -158117470 - AluSx SINE Alu 0 316 2 8532 104 27 12 chr1 124076194 124076917 -158116747 - HSMAR2 DNA Mariner -545 757 2 4421 232 16 59 chr1 124076917 124077241 -158116423 - L1MB7 LINE L1 -2194 4450 4114 2266 110 0 3 chr1 124077241 124077541 -158116123 + AluSx SINE Alu 1 299 -13 1443 203 3 21 chr1 124077540 124077826 -158115838 - AluJo SINE Alu -31 281 1 * 4421 232 16 59 chr1 124077826 124078548 -158115116 - L1MB7 LINE L1 -2815 3829 3317 732 183 8 0 chr1 124078548 124078668 -158114996 - FLAM_A SINE Alu -12 121 1 4421 232 16 59 chr1 124078668 124078784 -158114880 - L1MB7 LINE L1 -3327 3317 3198 1717 224 32 28 chr1 124078781 124079556 -158114108 - L1MB7 LINE L1 -3679 2965 2185 * 276 102 0 0 chr1 124079596 124079645 -158114019 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2625 247 74 20 chr1 124079655 124080416 -158113248 - L1MB7 LINE L1 -5733 809 8 872 257 72 4 chr1 124080543 124080780 -158112884 + MIR SINE MIR 2 254 -8 181 361 17 59 chr1 124080787 124080906 -158112758 - L2 LINE L2 -4 3309 3196 1503 261 60 15 chr1 124080956 124081406 -158112258 + LTR40a LTR ERVL 1 519 0 784 253 50 30 chr1 124081906 124082108 -158111556 + MIR SINE MIR 13 218 -44 1091 288 118 59 chr1 124082301 124082958 -158110706 + L1MEd LINE L1 189 919 -5200 2011 156 10 0 chr1 124082958 124083266 -158110398 + AluSx SINE Alu 1 311 -1 1091 288 118 59 chr1 124083266 124083551 -158110113 + L1MEd LINE L1 919 1186 -4933 * 4805 171 36 16 chr1 124083536 124084785 -158108879 + L1MB3 LINE L1 4890 6164 -19 395 287 85 49 chr1 124084824 124085141 -158108523 + L1MEd LINE L1 1208 1543 -4767 2092 106 7 7 chr1 124085141 124085433 -158108231 + AluY SINE Alu 1 292 -19 395 287 85 49 chr1 124085433 124085502 -158108162 + L1MEd LINE L1 1543 1608 -4702 1788 166 0 29 chr1 124086052 124086359 -158107305 - AluJb SINE Alu -12 300 3 584 289 161 22 chr1 124086388 124087193 -158106471 + L1MEd LINE L1 2193 3109 -3020 264 242 221 11 chr1 124087196 124087291 -158106373 - L2 LINE L2 0 3313 3199 384 315 25 2 chr1 124087318 124087446 -158106218 + MIR SINE MIR 25 153 -68 32 0 0 0 chr1 124087525 124087557 -158106107 + AT_rich Low_complexity Low_complexity 1 32 0 238 317 24 12 chr1 124087917 124087999 -158105665 - L2 LINE L2 -5 3267 3185 295 286 40 63 chr1 124088170 124088296 -158105368 + L2 LINE L2 3191 3313 0 1610 177 11 11 chr1 124088384 124088666 -158104998 - AluJo SINE Alu -30 282 1 2014 131 7 0 chr1 124088988 124089296 -158104368 - AluJb SINE Alu 0 310 1 186 103 0 0 chr1 124089608 124089637 -158104027 + (TG)n Simple_repeat Simple_repeat 2 30 0 682 286 20 20 chr1 124090793 124090996 -158102668 - MIR SINE MIR -11 251 49 854 195 0 7 chr1 124091004 124091180 -158102484 + AluJb SINE Alu 137 311 0 294 295 88 66 chr1 124091497 124091724 -158101940 - MIR SINE MIR -30 232 1 295 262 33 0 chr1 124092182 124092243 -158101421 - L2 LINE L2 -10 3303 3241 667 209 29 22 chr1 124092243 124092382 -158101282 + AluJb SINE Alu 137 276 -36 2537 63 0 0 chr1 124092388 124092687 -158100977 - AluY SINE Alu -12 299 1 965 258 98 44 chr1 124092727 124093180 -158100484 - L2 LINE L2 -65 3248 2771 301 282 54 116 chr1 124093178 124093419 -158100245 - L2 LINE L2 -1 3271 3046 * 776 213 61 5 chr1 124093447 124093644 -158100020 + Charlie5 DNA MER1_type 33 240 -2372 410 88 0 121 chr1 124093645 124093736 -158099928 + Charlie5 DNA MER1_type 2543 2622 0 565 346 97 21 chr1 124093799 124094282 -158099382 - L2 LINE L2 -341 2973 2454 201 260 19 39 chr1 124094330 124094434 -158099230 + GA-rich Low_complexity Low_complexity 1 102 0 304 301 33 20 chr1 124094464 124094617 -158099047 + G-rich Low_complexity Low_complexity 4 158 0 1691 139 114 3 chr1 124095002 124095326 -158098338 + MER46B DNA MER2_type 2 236 0 1579 155 30 18 chr1 124095327 124095662 -158098002 - L1M4 LINE L1 -1000 5426 5088 1474 187 22 9 chr1 124095655 124095970 -158097694 - L1MCa LINE L1 -3170 3256 2938 * 317 196 54 0 chr1 124095971 124096027 -158097637 - Tigger3(Golem) DNA MER2_type 0 3038 2980 261 196 113 10 chr1 124096027 124096124 -158097540 - L1M4 LINE L1 -1716 4710 4604 428 117 0 0 chr1 124096151 124096211 -158097453 + AluJ/FRAM SINE Alu 228 287 -25 1284 89 109 16 chr1 124096242 124096490 -158097174 - Tigger3(Golem) DNA MER2_type -481 2548 2278 549 169 0 12 chr1 124096472 124096593 -158097071 - Tigger3(Golem) DNA MER2_type -2912 117 1 * 1666 200 73 24 chr1 124096593 124096985 -158096679 - L1MCa LINE L1 -3488 2938 2567 1582 163 89 6 chr1 124096985 124097298 -158096366 - MER44D DNA MER2_type 0 609 1 1666 200 73 24 chr1 124097298 124097382 -158096282 - L1MCa LINE L1 -3859 2567 2489 642 69 0 0 chr1 124097382 124097469 -158096195 - L1PA2 LINE L1 0 6155 6069 1666 200 73 24 chr1 124097469 124097893 -158095771 - L1MCa LINE L1 -3937 2489 1928 1550 157 65 7 chr1 124097894 124098306 -158095358 - L1MCa LINE L1 -4557 1869 1345 1007 289 122 8 chr1 124098359 124098760 -158094904 + L2 LINE L2 2516 2962 -352 941 305 11 45 chr1 124098905 124099259 -158094405 - L2 LINE L2 -386 2928 2587 2463 70 0 0 chr1 124099381 124099680 -158093984 + AluSg SINE Alu 1 299 -11 2460 79 0 0 chr1 124099976 124100280 -158093384 + AluY SINE Alu 1 304 -7 214 342 94 17 chr1 124100638 124100755 -158092909 - MIR3 SINE MIR -42 166 41 2127 100 11 0 chr1 124100792 124101073 -158092591 - AluSc SINE Alu -25 284 1 269 241 0 0 chr1 124101368 124101426 -158092238 - MIR SINE MIR -34 228 171 338 250 0 0 chr1 124101590 124101658 -158092006 - L2 LINE L2 -1 3312 3245 2149 119 6 6 chr1 124101953 124102265 -158091399 + AluSx SINE Alu 1 312 0 280 333 31 23 chr1 124102695 124102824 -158090840 + L2 LINE L2 1173 1302 -2012 195 230 0 103 chr1 124102847 124102934 -158090730 + L2 LINE L2 1478 1555 -1759 269 341 40 64 chr1 124103547 124103720 -158089944 + MLT1K LTR MaLR 2 170 -418 1785 177 41 9 chr1 124104018 124104363 -158089301 + MLT2C1 LTR ERVL 1 356 -41 772 202 208 0 chr1 124104872 124105126 -158088538 + MER58B DNA MER1_type 1 332 -9 1967 95 57 7 chr1 124105127 124105410 -158088254 + AluSg SINE Alu 1 297 -13 1946 106 0 0 chr1 124105410 124105666 -158087998 + AluY SINE Alu 1 256 -55 2355 101 0 0 chr1 124106235 124106542 -158087122 + AluSc SINE Alu 1 307 -2 204 97 0 0 chr1 124106545 124106576 -158087088 + (CATA)n Simple_repeat Simple_repeat 2 32 0 315 250 130 22 chr1 124106632 124106816 -158086848 - L1ME4a LINE L1 -51 6070 5867 21 36 0 0 chr1 124106884 124106912 -158086752 + AT_rich Low_complexity Low_complexity 1 28 0 2292 89 0 25 chr1 124108230 124108545 -158085119 - AluSp SINE Alu -6 307 1 353 298 105 16 chr1 124109622 124109746 -158083918 + MIR SINE MIR 79 213 -49 818 312 92 43 chr1 124110344 124110812 -158082852 + L2 LINE L2 2821 3311 -2 22 0 0 0 chr1 124111089 124111111 -158082553 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 124111493 124111514 -158082150 + AT_rich Low_complexity Low_complexity 1 21 0 589 260 106 72 chr1 124112983 124113218 -158080446 - MIR SINE MIR -3 259 17 421 231 12 75 chr1 124113666 124113826 -158079838 + L1ME4a LINE L1 5613 5762 -359 404 249 77 34 chr1 124113845 124114078 -158079586 + L1ME4a LINE L1 5879 6121 0 297 167 0 0 chr1 124114753 124114807 -158078857 + (TG)n Simple_repeat Simple_repeat 2 55 0 659 169 32 0 chr1 124115240 124115364 -158078300 + FLAM_A SINE Alu 8 135 -7 192 132 19 38 chr1 124115371 124115424 -158078240 + GA-rich Low_complexity Low_complexity 3 54 0 22 35 0 0 chr1 124116382 124116411 -158077253 + AT_rich Low_complexity Low_complexity 1 29 0 189 333 0 0 chr1 124117217 124117271 -158076393 - L2 LINE L2 -9 3263 3210 1998 102 0 15 chr1 124117495 124117760 -158075904 + AluSg SINE Alu 31 291 -19 1989 128 0 24 chr1 124117849 124118145 -158075519 + AluSx SINE Alu 2 290 -22 256 206 95 16 chr1 124118321 124118384 -158075280 + L2 LINE L2 3153 3220 -52 1104 268 87 10 chr1 124118642 124119043 -158074621 - L2 LINE L2 -252 3061 2621 278 276 0 13 chr1 124119439 124119515 -158074149 + Charlie4 DNA MER1_type 1881 1955 -6 21 0 0 0 chr1 124120725 124120746 -158072918 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 124121062 124121103 -158072561 + GC_rich Low_complexity Low_complexity 1 41 0 324 0 0 0 chr1 124121392 124121428 -158072236 + (CA)n Simple_repeat Simple_repeat 2 37 0 280 271 174 21 chr1 124121647 124121791 -158071873 - MIR SINE MIR -1 261 96 1021 266 51 0 chr1 124122378 124122615 -158071049 - MIR SINE MIR 0 262 14 562 148 239 19 chr1 124122620 124122775 -158070889 - MER53 DNA DNA 0 189 1 557 332 55 8 chr1 124123690 124123928 -158069736 - MIR SINE MIR -1 261 13 2571 58 0 0 chr1 124124031 124124339 -158069325 - AluY SINE Alu -3 308 1 528 208 50 25 chr1 124124577 124124697 -158068967 - MER5C DNA MER1_type -200 124 2 476 289 0 8 chr1 124124807 124124928 -158068736 - L2 LINE L2 -4 3309 3190 253 320 33 33 chr1 124124947 124125069 -158068595 + MIR SINE MIR 39 160 -102 355 325 68 68 chr1 124126049 124126310 -158067354 - L2 LINE L2 -541 2773 2510 868 199 60 30 chr1 124126310 124126391 -158067273 - MER3 DNA MER1_type 0 209 132 2491 80 0 0 chr1 124126391 124126693 -158066971 + AluSc SINE Alu 1 302 -7 868 199 60 30 chr1 124126693 124126812 -158066852 - MER3 DNA MER1_type -77 132 3 355 325 68 68 chr1 124126812 124126974 -158066690 - L2 LINE L2 -803 2511 2350 1082 216 186 18 chr1 124127365 124127764 -158065900 + L2 LINE L2 894 1359 -1955 234 174 0 0 chr1 124127853 124127899 -158065765 + (TG)n Simple_repeat Simple_repeat 2 47 0 3122 145 39 89 chr1 124128009 124128673 -158064991 - L1MB5 LINE L1 -133 6041 5411 729 184 92 46 chr1 124128718 124128892 -158064772 - MER58C DNA MER1_type -5 210 29 2045 135 0 0 chr1 124129044 124129333 -158064331 + AluSx SINE Alu 13 301 -11 1019 92 0 0 chr1 124129394 124129525 -158064139 + AluSc SINE Alu 1 131 -178 2176 131 0 0 chr1 124129529 124129834 -158063830 + AluSx SINE Alu 1 305 -7 1736 145 38 54 chr1 124130151 124130209 -158063455 + L1MC1 LINE L1 6012 6069 -264 2409 56 0 23 chr1 124130209 124130512 -158063152 + AluY SINE Alu 4 299 -12 1736 145 38 54 chr1 124130512 124130770 -158062894 + L1MC1 LINE L1 6069 6323 -10 817 132 0 0 chr1 124130771 124130877 -158062787 + U6 snRNA snRNA 2 107 0 312 273 33 66 chr1 124131051 124131172 -158062492 + MIR SINE MIR 76 192 -70 198 0 0 0 chr1 124131190 124131212 -158062452 + (A)n Simple_repeat Simple_repeat 1 22 0 306 0 0 0 chr1 124133100 124133134 -158060530 + (CA)n Simple_repeat Simple_repeat 2 35 0 632 143 36 27 chr1 124133135 124133247 -158060417 + AluSg/x SINE Alu 196 308 -2 534 187 171 24 chr1 124133475 124133598 -158060066 + FLAM_C SINE Alu 2 142 -1 2965 134 99 32 chr1 124133782 124134276 -158059388 - MER1A DNA MER1_type 0 527 1 2429 61 7 0 chr1 124134476 124134773 -158058891 + AluY SINE Alu 7 305 -6 516 168 51 193 chr1 124135378 124135575 -158058089 - MER69A DNA AcHobo 0 177 9 340 315 71 8 chr1 124135599 124135726 -158057938 - L2 LINE L2 -1 3271 3137 1099 227 55 43 chr1 124136063 124136518 -158057146 + MLT1B LTR MaLR 1 388 -2 2792 133 21 12 chr1 124136724 124137146 -158056518 - MSTB LTR MaLR 0 426 1 398 176 15 0 chr1 124137221 124137289 -158056375 + Tigger2 DNA MER2_type 1 69 -2649 * 2697 110 8 83 chr1 124137279 124137685 -158055979 + Tigger2 DNA MER2_type 2273 2639 -79 2110 107 35 0 chr1 124137685 124137975 -158055689 + AluSg SINE Alu 1 300 -10 2697 110 8 83 chr1 124137975 124138050 -158055614 + Tigger2 DNA MER2_type 2639 2718 0 2379 136 92 7 chr1 124139113 124139524 -158054140 - MSTB2 LTR MaLR -2 455 10 1406 233 87 66 chr1 124139517 124140181 -158053483 - MER21B LTR ERV1 -137 726 1 * 404 214 8 143 chr1 124141244 124141307 -158052357 + MER81 DNA DNA 2 41 -73 6248 101 8 0 chr1 124141307 124141984 -158051680 - L1PA13 LINE L1 -4 6159 5489 1663 103 0 0 chr1 124141984 124142198 -158051466 - AluSx SINE Alu -98 214 1 6248 101 8 0 chr1 124142198 124143243 -158050421 - L1PA13 LINE L1 -674 5489 4430 404 214 8 143 chr1 124143243 124143305 -158050359 + MER81 DNA DNA 41 110 -4 268 313 113 9 chr1 124143519 124143634 -158050030 + L2 LINE L2 3187 3313 0 407 189 8 133 chr1 124143637 124143700 -158049964 + MIR SINE MIR 50 85 -146 1993 142 13 25 chr1 124143700 124144016 -158049648 - AluSx SINE Alu 0 312 1 407 189 8 133 chr1 124144016 124144092 -158049572 + MIR SINE MIR 85 169 -62 1369 127 14 81 chr1 124144093 124144415 -158049249 + MLT1B LTR MaLR 1 390 0 546 189 273 0 chr1 124144667 124144799 -158048865 - MER5A DNA MER1_type -7 182 15 2383 95 3 0 chr1 124145692 124145998 -158047666 + AluSx SINE Alu 6 312 0 292 209 198 25 chr1 124146181 124146323 -158047341 + MIR SINE MIR 40 214 -48 190 306 135 72 chr1 124146815 124147037 -158046627 - L2 LINE L2 -397 2917 2682 2541 247 79 44 chr1 124147154 124147988 -158045676 - MER21B LTR ERV1 0 863 1 1956 139 77 37 chr1 124148149 124148356 -158045308 - MER47A DNA MER2_type -1957 366 169 360 0 0 0 chr1 124148356 124148396 -158045268 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1799 96 77 23 chr1 124148401 124148662 -158045002 - AluSx SINE Alu -37 275 1 1956 139 77 37 chr1 124148662 124148800 -158044864 - MER47A DNA MER2_type -2157 166 1 347 314 209 24 chr1 124148903 124149134 -158044530 - L2 LINE L2 -913 2401 2214 2422 81 7 0 chr1 124149134 124149441 -158044223 + AluSg SINE Alu 2 310 0 347 314 209 24 chr1 124149441 124149875 -158043789 - L2 LINE L2 -1100 2214 1613 969 216 31 5 chr1 124149901 124150095 -158043569 + MER20 DNA MER1_type 20 218 -1 564 296 49 57 chr1 124150386 124150650 -158043014 - MIR SINE MIR 0 262 1 292 258 134 78 chr1 124150670 124150887 -158042777 - L2 LINE L2 -240 3032 2804 29 0 0 0 chr1 124151283 124151312 -158042352 + AT_rich Low_complexity Low_complexity 1 29 0 955 174 6 17 chr1 124151871 124152049 -158041615 + AluJo SINE Alu 120 295 -17 281 276 74 18 chr1 124152250 124152413 -158041251 + L1ME4a LINE L1 5718 5889 -232 2361 100 0 3 chr1 124152579 124152889 -158040775 - AluSx SINE Alu -3 309 1 1913 202 31 0 chr1 124152995 124153347 -158040317 - MLT1A1 LTR MaLR 0 365 3 338 228 171 32 chr1 124154324 124154447 -158039217 + MIR3 SINE MIR 66 205 -3 2198 224 113 14 chr1 124154480 124155057 -158038607 - HsTC2c DNA Tc2 -1 728 95 1360 152 0 14 chr1 124155088 124155305 -158038359 + AluJb SINE Alu 84 297 -15 197 154 0 135 chr1 124155388 124155440 -158038224 + L2 LINE L2 3228 3272 0 641 330 211 29 chr1 124155931 124157293 -158036371 + L2 LINE L2 1281 2890 -424 222 200 211 11 chr1 124157464 124157554 -158036110 + L2 LINE L2 3125 3232 -81 811 208 0 0 chr1 124158006 124158136 -158035528 + FLAM_A SINE Alu 1 130 -3 647 144 0 19 chr1 124158410 124158514 -158035150 - AluJ SINE Alu -5 307 206 1374 157 0 44 chr1 124158548 124158777 -158034887 - AluJb SINE Alu -93 219 1 2041 276 105 38 chr1 124158783 124159302 -158034362 - L1M4 LINE L1 -1784 4362 3879 954 103 32 0 chr1 124159302 124159428 -158034236 - FLAM_C SINE Alu -3 130 1 2041 276 105 38 chr1 124159428 124160189 -158033475 - L1M4 LINE L1 -2267 3879 2997 285 279 58 0 chr1 124160396 124160482 -158033182 - MLT1J LTR MaLR -116 395 305 243 0 0 0 chr1 124162360 124162387 -158031277 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 163 0 36 chr1 124162983 124163179 -158030485 + AluJb SINE Alu 86 274 -38 700 129 23 0 chr1 124163186 124163318 -158030346 + GA-rich Low_complexity Low_complexity 1 135 0 437 231 201 44 chr1 124163578 124163872 -158029792 - L1ME4a LINE L1 -58 6063 5724 431 287 64 10 chr1 124164587 124164789 -158028875 - MIR SINE MIR -48 214 2 527 241 28 57 chr1 124165166 124165272 -158028392 + L2 LINE L2 3136 3239 -33 2100 187 0 32 chr1 124165272 124165647 -158028017 - MLT1A1 LTR MaLR -2 363 1 527 241 28 57 chr1 124165647 124165681 -158027983 + L2 LINE L2 3239 3272 0 439 234 145 7 chr1 124166688 124166833 -158026831 - MIR SINE MIR -19 243 79 721 242 141 4 chr1 124166926 124167153 -158026511 - MIR SINE MIR -3 259 2 3941 160 51 76 chr1 124167296 124167904 -158025760 - MER21B LTR ERV1 0 913 292 2300 110 0 0 chr1 124167904 124168212 -158025452 - AluY SINE Alu -3 308 1 3941 160 51 76 chr1 124168212 124168462 -158025202 - MER21B LTR ERV1 -621 292 30 2578 128 33 42 chr1 124168462 124168892 -158024772 + MSTB LTR MaLR 1 426 0 3941 160 51 76 chr1 124168892 124168922 -158024742 - MER21B LTR ERV1 -883 30 1 864 226 82 0 chr1 124170393 124170588 -158023076 + MIR SINE MIR 52 262 0 251 231 137 43 chr1 124171062 124171179 -158022485 + MIR SINE MIR 129 256 -6 5534 22 17 2 chr1 124175705 124176342 -158017322 - SVA Other Other 0 1386 764 883 127 0 0 chr1 124177410 124177528 -158016136 - FLAM_C SINE Alu -15 118 1 4550 221 84 74 chr1 124177722 124178185 -158015479 + L1MEc LINE L1 284 741 -5655 730 197 31 0 chr1 124178185 124178312 -158015352 + FLAM_A SINE Alu 1 131 -2 4550 221 84 74 chr1 124178312 124178738 -158014926 + L1MEc LINE L1 741 1161 -5235 1576 170 4 0 chr1 124178738 124178991 -158014673 - AluJb SINE Alu -9 303 50 4550 221 84 74 chr1 124178991 124179930 -158013734 + L1MEc LINE L1 1161 2132 -4264 264 244 56 22 chr1 124180889 124180979 -158012685 - MIR3 SINE MIR -7 201 109 208 245 0 0 chr1 124181349 124181402 -158012262 - L2 LINE L2 0 3272 3220 297 300 128 62 chr1 124181706 124181979 -158011685 + L2 LINE L2 2974 3264 -8 1327 128 10 5 chr1 124183710 124183906 -158009758 - L1PA16 LINE L1 -9 6157 5961 2256 113 0 0 chr1 124183907 124184207 -158009457 - AluSc SINE Alu -9 300 1 208 408 39 0 chr1 124184361 124184491 -158009173 - L2 LINE L2 -600 2714 2580 40 37 0 0 chr1 124184650 124184704 -158008960 + AT_rich Low_complexity Low_complexity 1 54 0 2684 219 18 25 chr1 124184735 124185334 -158008330 + MLT2F LTR ERVL 1 595 -68 478 289 107 22 chr1 124235340 124235664 -157958000 + L2 LINE L2 2618 3131 -182 193 256 233 11 chr1 124236095 124236185 -157957479 - L3b LINE CR1 -198 1385 1276 308 241 0 0 chr1 124236256 124236335 -157957329 - MIR SINE MIR -31 231 153 1574 141 116 3 chr1 124237651 124237970 -157955694 + MER46B DNA MER2_type 7 236 0 1488 155 30 18 chr1 124237971 124238306 -157955358 - L1M4 LINE L1 -1000 5426 5088 1388 187 22 9 chr1 124238299 124238614 -157955050 - L1MCa LINE L1 -3170 3256 2938 * 298 196 54 0 chr1 124238615 124238671 -157954993 - Tigger3(Golem) DNA MER2_type -1 3028 2970 238 189 116 11 chr1 124238671 124238766 -157954898 - L1M4 LINE L1 -1716 4710 4606 433 117 0 0 chr1 124238795 124238855 -157954809 + AluJ/FRAM SINE Alu 228 287 -25 1220 85 109 16 chr1 124238886 124239134 -157954530 - Tigger3(Golem) DNA MER2_type -482 2547 2277 522 139 0 0 chr1 124239116 124239195 -157954469 - Tigger3(Golem) DNA MER2_type -2912 117 39 * 1557 203 73 24 chr1 124239236 124239629 -157954035 - L1MCa LINE L1 -3487 2939 2567 1565 163 89 6 chr1 124239629 124239942 -157953722 - MER44D DNA MER2_type 0 609 1 1557 203 73 24 chr1 124239942 124240026 -157953638 - L1MCa LINE L1 -3859 2567 2489 637 69 0 0 chr1 124240026 124240113 -157953551 - L1PA2 LINE L1 0 6155 6069 1557 203 73 24 chr1 124240113 124240537 -157953127 - L1MCa LINE L1 -3937 2489 1928 1457 160 65 7 chr1 124240538 124240950 -157952714 - L1MCa LINE L1 -4557 1869 1345 1020 289 122 8 chr1 124241003 124241404 -157952260 + L2 LINE L2 2516 2962 -352 925 304 11 48 chr1 124241549 124241904 -157951760 - L2 LINE L2 -386 2928 2587 2471 70 0 0 chr1 124242026 124242325 -157951339 + AluSg SINE Alu 1 299 -11 2328 57 0 24 chr1 124242621 124242918 -157950746 + AluY SINE Alu 1 290 -21 495 261 88 14 chr1 124242932 124243216 -157950448 + L1MEc LINE L1 859 1163 -5233 252 283 0 62 chr1 124243228 124243341 -157950323 + GA-rich Low_complexity Low_complexity 2 107 0 328 175 55 155 chr1 124243413 124243462 -157950202 + L1MEc LINE L1 1142 1194 -5023 2072 152 0 9 chr1 124243462 124243777 -157949887 + AluJb SINE Alu 1 312 0 328 175 55 155 chr1 124243777 124243927 -157949737 + L1MEc LINE L1 1194 1321 -4896 2073 135 3 3 chr1 124243966 124244278 -157949386 + AluSx SINE Alu 1 312 0 294 29 0 0 chr1 124244288 124244323 -157949341 + (CA)n Simple_repeat Simple_repeat 2 36 0 1839 150 0 42 chr1 124244540 124244853 -157948811 - AluJo SINE Alu -12 300 1 724 228 154 16 chr1 124244921 124245077 -157948587 + L1MEc LINE L1 1934 2067 -4329 2226 121 0 0 chr1 124245077 124245375 -157948289 + AluSx SINE Alu 1 298 -14 724 228 154 16 chr1 124245375 124245595 -157948069 + L1MEc LINE L1 2067 2362 -4034 528 148 37 28 chr1 124245612 124245720 -157947944 - Charlie4 DNA MER1_type -1779 182 74 1589 137 0 70 chr1 124245870 124246141 -157947523 - AluJb SINE Alu -5 307 56 360 199 0 7 chr1 124246215 124246287 -157947377 - AluJb SINE Alu -249 54 1 6825 49 11 3 chr1 124246313 124247402 -157946262 - L1PA7 LINE L1 -11 6143 5028 191 333 0 0 chr1 124247671 124247725 -157945939 + L2 LINE L2 3210 3263 -9 22 35 0 0 chr1 124248531 124248560 -157945104 + AT_rich Low_complexity Low_complexity 1 29 0 297 167 0 0 chr1 124249911 124249965 -157943699 + (CA)n Simple_repeat Simple_repeat 2 55 0 347 249 77 34 chr1 124250640 124250873 -157942791 - L1ME4a LINE L1 0 6121 5879 391 222 1 70 chr1 124250903 124251056 -157942608 - L1P5 LINE L1 -396 5725 5609 22 56 0 0 chr1 124251400 124251436 -157942228 + AT_rich Low_complexity Low_complexity 1 36 0 589 260 106 72 chr1 124251501 124251736 -157941928 + MIR SINE MIR 17 259 -3 21 0 0 0 chr1 124253058 124253079 -157940585 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 124253461 124253483 -157940181 + AT_rich Low_complexity Low_complexity 1 22 0 808 314 92 43 chr1 124253760 124254228 -157939436 - L2 LINE L2 -2 3311 2821 345 298 105 16 chr1 124254826 124254950 -157938714 - MIR SINE MIR -49 213 79 654 174 0 0 chr1 124256037 124256152 -157937512 + AluSp/q SINE Alu 195 309 -4 21 36 0 0 chr1 124257471 124257499 -157936165 + AT_rich Low_complexity Low_complexity 1 28 0 315 250 130 22 chr1 124257567 124257751 -157935913 + L1ME4a LINE L1 5867 6070 -51 204 97 0 0 chr1 124257807 124257838 -157935826 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2361 104 0 0 chr1 124257841 124258148 -157935516 - AluSc SINE Alu -2 307 1 267 170 117 75 chr1 124258622 124258716 -157934948 + MIR SINE MIR 119 216 -46 744 104 0 61 chr1 124258890 124259005 -157934659 - AluSq/x SINE Alu -205 108 1 2222 88 24 3 chr1 124259616 124259910 -157933754 - AluSp SINE Alu -13 300 1 188 253 38 63 chr1 124260139 124260218 -157933446 - MER5B DNA MER1_type -77 101 25 687 230 37 11 chr1 124260485 124260676 -157932988 - MER106A DNA MER1_type -40 196 1 27 73 0 0 chr1 124261183 124261238 -157932426 + AT_rich Low_complexity Low_complexity 1 55 0 1418 209 58 3 chr1 124261562 124261854 -157931810 - AluJo SINE Alu 0 312 5 1997 144 7 13 chr1 124263810 124264109 -157929555 + AluJb SINE Alu 1 297 -15 265 218 8 137 chr1 124264501 124264625 -157929039 + MER5B DNA MER1_type 3 110 -68 186 43 0 0 chr1 124264759 124264782 -157928882 + (TG)n Simple_repeat Simple_repeat 1 23 0 752 269 72 44 chr1 124264956 124265095 -157928569 + MIR SINE MIR 2 136 -126 2227 105 0 0 chr1 124265095 124265381 -157928283 + AluSp SINE Alu 1 286 -27 219 36 0 0 chr1 124265381 124265409 -157928255 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 752 269 72 44 chr1 124265409 124265517 -157928147 + MIR SINE MIR 135 257 -5 2226 95 7 0 chr1 124265625 124265919 -157927745 - AluY SINE Alu -15 296 1 2020 95 57 7 chr1 124265919 124266202 -157927462 - AluSg SINE Alu -13 297 1 719 208 61 3 chr1 124266203 124266457 -157927207 - MER58B DNA MER1_type -9 332 1 1671 177 41 9 chr1 124266966 124267311 -157926353 - MLT2C1 LTR ERVL -41 356 1 182 240 29 87 chr1 124268374 124268478 -157925186 - L2 LINE L2 -1739 1575 1478 281 333 31 23 chr1 124268501 124268630 -157925034 - L2 LINE L2 -2012 1302 1173 867 250 86 13 chr1 124268750 124268982 -157924682 - MIR SINE MIR -13 249 1 2412 61 7 0 chr1 124269668 124269965 -157923699 - AluY SINE Alu -6 305 7 2845 124 103 35 chr1 124270165 124270658 -157923006 + MER1A DNA MER1_type 1 527 0 406 188 31 10 chr1 124270918 124271014 -157922650 + AluSg/x SINE Alu 196 293 -19 1990 128 0 27 chr1 124271103 124271400 -157922264 + AluSx SINE Alu 2 290 -22 259 206 95 16 chr1 124271576 124271639 -157922025 + L2 LINE L2 3153 3220 -52 1170 262 87 10 chr1 124271897 124272298 -157921366 - L2 LINE L2 -252 3061 2621 257 276 0 13 chr1 124272694 124272770 -157920894 + Charlie4 DNA MER1_type 1881 1955 -6 21 0 0 0 chr1 124273980 124274001 -157919663 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 124274317 124274358 -157919306 + GC_rich Low_complexity Low_complexity 1 41 0 308 75 0 19 chr1 124274508 124274561 -157919103 + (TCC)n Simple_repeat Simple_repeat 2 53 0 195 204 0 0 chr1 124274589 124274643 -157919021 + (CGG)n Simple_repeat Simple_repeat 3 56 0 2310 271 179 23 chr1 124274917 124275582 -157918082 - L2 LINE L2 0 3313 2753 225 0 0 0 chr1 124275582 124275607 -157918057 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2310 271 179 23 chr1 124275607 124276373 -157917291 - L2 LINE L2 -560 2753 1653 245 98 0 0 chr1 124276373 124276414 -157917250 - Alu SINE Alu -7 292 252 586 267 9 43 chr1 124276549 124276759 -157916905 - L2 LINE L2 -1668 1646 1444 488 213 85 35 chr1 124276743 124276884 -157916780 + MER91A DNA MER1_type 13 160 -36 * 300 188 0 0 chr1 124276926 124276990 -157916674 + (CA)n Simple_repeat Simple_repeat 2 65 0 1082 216 186 18 chr1 124277079 124277478 -157916186 - L2 LINE L2 -1955 1359 894 355 325 68 68 chr1 124277869 124278031 -157915633 + L2 LINE L2 2350 2511 -803 841 204 60 30 chr1 124278031 124278150 -157915514 + MER3 DNA MER1_type 3 132 -77 2482 80 0 0 chr1 124278150 124278451 -157915213 - AluSc SINE Alu -8 301 1 841 204 60 30 chr1 124278451 124278532 -157915132 + MER3 DNA MER1_type 132 209 0 355 325 68 68 chr1 124278532 124278793 -157914871 + L2 LINE L2 2510 2773 -541 235 320 33 33 chr1 124279773 124279895 -157913769 - MIR SINE MIR -102 160 39 453 289 0 8 chr1 124279914 124280035 -157913629 + L2 LINE L2 3190 3309 -4 525 208 50 25 chr1 124280145 124280265 -157913399 + MER5C DNA MER1_type 2 124 -200 2598 55 0 0 chr1 124280503 124280811 -157912853 + AluY SINE Alu 1 308 -3 538 346 23 9 chr1 124280914 124281131 -157912533 + MIR SINE MIR 13 232 -30 624 143 247 19 chr1 124282068 124282222 -157911442 + MER53 DNA DNA 1 189 0 498 239 148 34 chr1 124282223 124282432 -157911232 + MIR SINE MIR 12 244 -18 418 266 95 13 chr1 124282632 124282790 -157910874 + MIR SINE MIR 92 262 0 259 271 174 21 chr1 124283379 124283523 -157910141 + MIR SINE MIR 96 261 -1 432 0 0 0 chr1 124283742 124283790 -157909874 + (TG)n Simple_repeat Simple_repeat 2 49 0 2012 88 42 75 chr1 124284378 124284685 -157908979 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr1 124284965 124284986 -157908678 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 124285424 124285447 -157908217 + (TCTCCC)n Simple_repeat Simple_repeat 1 23 0 5339 69 22 53 chr1 124285447 124286269 -157907395 + SVA Other Other 71 866 -520 6749 60 17 34 chr1 124286331 124287325 -157906339 + SVA Other Other 433 1386 0 353 211 84 0 chr1 124288263 124288334 -157905330 - AluS SINE Alu -223 77 1 632 143 36 27 chr1 124288561 124288673 -157904991 - AluSg/x SINE Alu -2 307 195 270 0 0 0 chr1 124288674 124288704 -157904960 + (TG)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr1 124290593 124290615 -157903049 + (T)n Simple_repeat Simple_repeat 1 22 0 328 248 28 99 chr1 124290615 124290756 -157902908 - MIR SINE MIR -56 206 76 817 132 0 0 chr1 124290930 124291036 -157902628 - U6 snRNA snRNA 0 107 2 1736 145 38 54 chr1 124291037 124291295 -157902369 - L1MC1 LINE L1 -10 6323 6069 2422 53 0 23 chr1 124291295 124291598 -157902066 - AluY SINE Alu -12 299 4 1736 145 38 54 chr1 124291598 124291656 -157902008 - L1MC1 LINE L1 -264 6069 6012 2143 135 0 0 chr1 124291973 124292276 -157901388 - AluSx SINE Alu -9 303 1 1019 92 0 0 chr1 124292280 124292411 -157901253 - AluSc SINE Alu -178 131 1 2045 135 0 0 chr1 124292472 124292761 -157900903 - AluSx SINE Alu -11 301 13 729 184 92 46 chr1 124292913 124293087 -157900577 + MER58C DNA MER1_type 29 210 -5 3571 151 34 91 chr1 124293132 124293899 -157899765 + L1MB5 LINE L1 5411 6132 -42 2557 55 3 7 chr1 124293899 124294209 -157899455 + AluSp SINE Alu 1 309 -4 3571 151 34 91 chr1 124294209 124294242 -157899422 + L1MB5 LINE L1 6132 6165 -9 234 169 91 39 chr1 124294834 124294911 -157898753 - MIR SINE MIR -53 209 129 718 253 57 45 chr1 124294920 124295165 -157898499 + MIR SINE MIR 5 252 -10 198 287 119 20 chr1 124295181 124295282 -157898382 - MIR SINE MIR -124 138 28 913 162 26 13 chr1 124295388 124295542 -157898122 + FRAM SINE Alu 1 156 -10 180 163 0 0 chr1 124295734 124295777 -157897887 + A-rich Low_complexity Low_complexity 1 43 0 403 321 132 43 chr1 124295906 124296158 -157897506 + L1MC4a LINE L1 5317 5545 -2263 2311 48 12 79 chr1 124296158 124296488 -157897176 - AluY SINE Alu -3 308 1 403 321 132 43 chr1 124296488 124296767 -157896897 + L1MC4a LINE L1 5545 5895 -1913 894 248 87 58 chr1 124296896 124297275 -157896389 + L2 LINE L2 1706 2095 -1219 1383 139 54 16 chr1 124297326 124297584 -157896080 - L1MB3 LINE L1 0 6183 5916 1840 139 114 3 chr1 124297639 124297963 -157895701 + MER46B DNA MER2_type 2 236 0 1642 161 40 20 chr1 124297964 124298313 -157895351 - L1MB3 LINE L1 -1000 5146 4791 1523 194 19 6 chr1 124298292 124298607 -157895057 - L1MB3 LINE L1 -3170 2976 2658 * 322 196 54 0 chr1 124298608 124298664 -157895000 - Tigger3(Golem) DNA MER2_type 0 3038 2980 284 196 113 10 chr1 124298664 124298761 -157894903 - L1M4 LINE L1 -1716 4430 4324 458 117 0 0 chr1 124298788 124298848 -157894816 + AluJ/FRAM SINE Alu 228 287 -25 1340 89 109 16 chr1 124298879 124299127 -157894537 - Tigger3(Golem) DNA MER2_type -482 2547 2277 561 169 0 12 chr1 124299109 124299230 -157894434 - Tigger3(Golem) DNA MER2_type -2912 117 1 * 1764 249 19 6 chr1 124299230 124299622 -157894042 - L1MB3 LINE L1 -3488 2658 2257 1720 163 89 6 chr1 124299622 124299935 -157893729 - MER44D DNA MER2_type 0 609 1 1764 249 19 6 chr1 124299935 124300019 -157893645 - L1MB3 LINE L1 -3889 2257 2176 680 69 0 0 chr1 124300019 124300106 -157893558 - L1PA3 LINE L1 0 6155 6069 1591 146 203 12 chr1 124300125 124300530 -157893134 - L1MCa LINE L1 -4017 2409 1928 1607 182 68 23 chr1 124300547 124300943 -157892721 - L1MCa LINE L1 -4668 1758 1345 1004 289 122 8 chr1 124300996 124301397 -157892267 + L2 LINE L2 2516 2962 -352 934 305 11 45 chr1 124301542 124301896 -157891768 - L2 LINE L2 -386 2928 2587 2485 70 0 0 chr1 124302018 124302317 -157891347 + AluSg SINE Alu 1 299 -11 2488 79 0 0 chr1 124302613 124302918 -157890746 + AluY SINE Alu 1 305 -6 205 342 94 17 chr1 124303276 124303393 -157890271 - MIR3 SINE MIR -42 166 41 2138 116 10 0 chr1 124303408 124303711 -157889953 - AluSc SINE Alu -3 306 1 270 241 0 0 chr1 124304006 124304064 -157889600 - MIR SINE MIR -34 228 171 327 250 0 0 chr1 124304228 124304296 -157889368 - L2 LINE L2 -1 3312 3245 2209 112 6 6 chr1 124304591 124304903 -157888761 + AluSx SINE Alu 1 312 0 377 239 449 0 chr1 124305234 124305401 -157888263 + MIR SINE MIR 21 262 0 734 297 174 13 chr1 124307236 124307682 -157885982 - L2 LINE L2 -218 3054 2541 2258 85 10 3 chr1 124307902 124308197 -157885467 + AluSx SINE Alu 1 297 -15 284 204 105 131 chr1 124308747 124308921 -157884743 + L1MCc LINE L1 1316 1493 -5375 986 184 100 13 chr1 124308921 124309160 -157884504 - MIR SINE MIR -1 261 2 284 204 105 131 chr1 124309160 124309245 -157884419 + L1MCc LINE L1 1493 1579 -5289 2095 134 19 7 chr1 124309245 124309552 -157884112 + AluJb SINE Alu 1 311 -1 284 204 105 131 chr1 124309552 124309697 -157883967 + L1MCc LINE L1 1579 1900 -4968 653 304 129 27 chr1 124309805 124310170 -157883494 + MLT1J LTR MaLR 110 511 0 318 288 153 38 chr1 124310170 124310656 -157883008 + L1MCc LINE L1 1906 2480 -4642 1907 155 0 10 chr1 124310691 124311000 -157882664 + AluJb SINE Alu 3 308 -4 599 184 120 20 chr1 124311003 124311253 -157882411 + L1MCc LINE L1 3839 4113 -2828 405 196 216 10 chr1 124311662 124311764 -157881900 - FRAM SINE Alu -56 120 1 2055 137 10 0 chr1 124311966 124312273 -157881391 - AluSx SINE Alu -2 310 1 1296 233 109 19 chr1 124312273 124312738 -157880926 - L1M4 LINE L1 -3163 2983 2473 22 0 0 0 chr1 124312738 124312760 -157880904 + AT_rich Low_complexity Low_complexity 1 22 0 342 279 132 27 chr1 124312896 124313262 -157880402 - MLT1F1 LTR MaLR -74 493 65 233 299 89 48 chr1 124313263 124313577 -157880087 - HAL1 LINE L1 -1043 1464 1138 838 343 101 20 chr1 124314911 124315457 -157878207 + L2 LINE L2 2135 2724 -590 2409 65 31 0 chr1 124315699 124315992 -157877672 + AluY SINE Alu 1 302 -9 188 320 155 29 chr1 124316002 124316208 -157877456 + L2 LINE L2 3080 3311 -2 1696 175 46 52 chr1 124316251 124316574 -157877090 - THE1B LTR MaLR 0 364 42 2106 113 17 3 chr1 124316574 124316866 -157876798 + AluSg SINE Alu 1 296 -14 1696 175 46 52 chr1 124316866 124316908 -157876756 - THE1B LTR MaLR -322 42 1 360 83 0 0 chr1 124316944 124316992 -157876672 - MSTA LTR MaLR -380 48 1 1521 234 42 57 chr1 124317053 124317296 -157876368 - L1ME1 LINE L1 -6 6160 5915 2232 111 0 7 chr1 124317296 124317593 -157876071 - AluSx SINE Alu -17 295 1 1521 234 42 57 chr1 124317593 124317864 -157875800 - L1ME1 LINE L1 -251 5915 5650 1780 216 63 76 chr1 124317880 124318421 -157875243 - MLT1F LTR MaLR 0 542 9 2072 214 136 20 chr1 124318434 124318925 -157874739 - L1ME1 LINE L1 -1277 4869 4272 1803 159 83 18 chr1 124318925 124319252 -157874412 - MER7A DNA MER2_type 0 346 1 2072 214 136 20 chr1 124319252 124319460 -157874204 - L1ME1 LINE L1 -1874 4272 4089 230 176 47 59 chr1 124319457 124319542 -157874122 + L1M4 LINE L1 3862 3945 -2201 * 6860 104 33 2 chr1 124319594 124319997 -157873667 + L1P3 LINE L1 8 397 -6064 240 35 0 0 chr1 124319997 124320026 -157873638 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 6860 104 33 2 chr1 124320026 124320609 -157873055 + L1P3 LINE L1 397 1025 -5436 741 99 0 10 chr1 124320609 124320710 -157872954 - LTR12 LTR ERV1 0 714 615 306 263 10 0 chr1 124320712 124320811 -157872853 - LTR30 LTR ERV1 -79 643 544 1336 100 48 74 chr1 124320811 124321042 -157872622 - LTR12 LTR ERV1 -437 277 53 284 196 0 0 chr1 124321043 124321094 -157872570 - LTR30 LTR ERV1 -671 51 1 29879 97 22 17 chr1 124321094 124321465 -157872199 + L1PA7 LINE L1 736 1104 -5050 1996 119 17 27 chr1 124321465 124321758 -157871906 + AluSg SINE Alu 2 291 -19 29879 97 22 17 chr1 124321758 124326772 -157866892 + L1PA7 LINE L1 1104 6143 -11 378 199 0 7 chr1 124326798 124326870 -157866794 + AluJb SINE Alu 1 54 -246 1553 138 0 71 chr1 124326944 124327213 -157866451 + AluJb SINE Alu 56 305 -7 579 140 35 44 chr1 124327357 124327471 -157866193 + Charlie4 DNA MER1_type 70 182 -1779 884 229 151 14 chr1 124327488 124327708 -157865956 - L1MEc LINE L1 -4034 2362 2173 2265 117 0 0 chr1 124327708 124328007 -157865657 - AluSx SINE Alu -13 299 1 884 229 151 14 chr1 124328007 124328229 -157865435 - L1MEc LINE L1 -4223 2173 1850 1913 145 0 41 chr1 124328231 124328549 -157865115 + AluJo SINE Alu 1 305 -7 231 216 119 106 chr1 124328730 124328765 -157864899 - L1MEc LINE L1 -4853 1362 1329 315 0 0 0 chr1 124328765 124328800 -157864864 + (TG)n Simple_repeat Simple_repeat 2 36 0 2106 131 3 3 chr1 124328807 124329119 -157864545 - AluSx SINE Alu 0 312 1 231 216 119 106 chr1 124329119 124329302 -157864362 - L1MEc LINE L1 -4891 1324 1133 2077 157 0 3 chr1 124329322 124329635 -157864029 - AluJb SINE Alu 0 312 1 252 283 0 62 chr1 124329756 124329869 -157863795 + CT-rich Low_complexity Low_complexity 2 107 0 1463 292 148 28 chr1 124329881 124330178 -157863486 - L1MEc LINE L1 -5233 1163 903 2420 54 0 24 chr1 124330178 124330475 -157863189 - AluY SINE Alu -21 290 1 1463 292 148 28 chr1 124330475 124331173 -157862491 - L1MEc LINE L1 -5493 903 49 196 336 123 33 chr1 124332101 124332223 -157861441 - L2 LINE L2 0 3313 3181 343 220 144 23 chr1 124332314 124332446 -157861218 - L2 LINE L2 -5 3308 3161 382 296 196 30 chr1 124332499 124332901 -157860763 - L2 LINE L2 -650 2664 2196 716 311 79 16 chr1 124332903 124333282 -157860382 + L1MC4a LINE L1 5528 5930 -1878 235 238 71 32 chr1 124333493 124333619 -157860045 - L2 LINE L2 -1107 2207 2077 511 250 96 39 chr1 124333643 124333975 -157859689 - L2 LINE L2 -1357 1957 1607 891 211 44 40 chr1 124334103 124334330 -157859334 - Charlie1b DNA MER1_type -242 281 54 1605 174 52 14 chr1 124334397 124334685 -157858979 - AluJo SINE Alu -12 300 2 197 348 61 0 chr1 124335160 124335275 -157858389 + MIR SINE MIR 128 249 -13 642 151 9 9 chr1 124335338 124335444 -157858220 + FLAM_A SINE Alu 20 125 -17 1771 129 29 4 chr1 124336325 124336605 -157857059 + L1MC1 LINE L1 6046 6332 -1 26 0 0 0 chr1 124338251 124338277 -157855387 + AT_rich Low_complexity Low_complexity 1 26 0 300 295 16 0 chr1 124338455 124338577 -157855087 + MIR SINE MIR 112 235 -27 1478 181 44 31 chr1 124338775 124339068 -157854596 - AluJo SINE Alu -15 297 1 637 303 81 31 chr1 124339663 124339963 -157853701 + L2 LINE L2 595 926 -2388 1721 157 10 33 chr1 124339963 124340268 -157853396 - AluJb SINE Alu -14 298 1 637 303 81 31 chr1 124340268 124340413 -157853251 + L2 LINE L2 926 1062 -2252 2863 277 65 23 chr1 124340413 124340713 -157852951 + L2 LINE L2 1939 2225 -1088 2248 142 101 3 chr1 124340713 124341100 -157852564 - MSTB LTR MaLR 0 426 2 2863 277 65 23 chr1 124341100 124342103 -157851561 + L2 LINE L2 2225 3312 -1 254 284 29 10 chr1 124342934 124343036 -157850628 + L1MC4 LINE L1 7923 8026 -16 1896 148 28 0 chr1 124343068 124343359 -157850305 - AluSq SINE Alu -14 299 1 21 57 0 0 chr1 124343795 124343830 -157849834 + AT_rich Low_complexity Low_complexity 1 35 0 1170 180 42 18 chr1 124344378 124344595 -157849069 - AluJb SINE Alu -90 222 1 452 252 65 0 chr1 124346103 124346226 -157847438 - L2 LINE L2 -4 3309 3179 23 0 0 0 chr1 124346955 124346978 -157846686 + AT_rich Low_complexity Low_complexity 1 23 0 250 192 41 14 chr1 124347876 124347949 -157845715 - L1MC4 LINE L1 -31 8011 7937 583 259 69 6 chr1 124347953 124348127 -157845537 - L1MC4 LINE L1 -169 7873 7689 1749 177 10 7 chr1 124348392 124348697 -157844967 + AluJb SINE Alu 1 306 -6 1807 240 78 33 chr1 124348755 124349393 -157844271 + L1MC4 LINE L1 7367 8033 -9 326 254 98 25 chr1 124349922 124350044 -157843620 + L2 LINE L2 3179 3309 -4 1665 246 101 8 chr1 124350200 124350716 -157842948 - L1ME3A LINE L1 -194 5976 5413 2213 96 7 20 chr1 124351334 124351636 -157842028 - AluSx SINE Alu -14 298 1 21 0 0 0 chr1 124353380 124353401 -157840263 + AT_rich Low_complexity Low_complexity 1 21 0 2233 89 10 7 chr1 124355585 124355877 -157837787 - AluSg SINE Alu -17 293 1 1087 277 195 19 chr1 124357320 124358362 -157835302 - L2 LINE L2 -11 3302 2072 239 284 89 11 chr1 124358364 124358533 -157835131 - L2 LINE L2 -1412 1902 1635 2229 100 3 10 chr1 124358747 124359046 -157834618 + AluSg SINE Alu 1 297 -13 190 167 0 24 chr1 124361409 124361451 -157832213 - L2 LINE L2 -319 2953 2913 513 0 0 0 chr1 124362265 124362322 -157831342 + (TG)n Simple_repeat Simple_repeat 1 57 0 388 280 180 9 chr1 124363378 124363589 -157830075 - MIR SINE MIR -8 254 8 315 209 121 33 chr1 124364458 124364549 -157829115 + MIR SINE MIR 23 121 -87 315 0 0 0 chr1 124365065 124365100 -157828564 + (CA)n Simple_repeat Simple_repeat 1 35 0 282 106 0 0 chr1 124365100 124365147 -157828517 + (CCA)n Simple_repeat Simple_repeat 1 47 0 2280 81 0 23 chr1 124366229 124366536 -157827128 - AluSx SINE Alu -12 300 1 255 103 0 0 chr1 124367196 124367235 -157826429 + (CA)n Simple_repeat Simple_repeat 2 40 0 324 48 0 0 chr1 124368535 124368577 -157825087 + (CA)n Simple_repeat Simple_repeat 1 42 0 275 217 0 0 chr1 124368577 124368637 -157825027 - MIR SINE MIR -74 188 129 545 299 93 9 chr1 124368790 124369004 -157824660 - MIR SINE MIR -19 243 12 2092 133 56 0 chr1 124369008 124369346 -157824318 + MER46B DNA MER2_type 1 232 -4 806 196 29 23 chr1 124369404 124369577 -157824087 - FAM SINE Alu 0 175 2 541 224 46 82 chr1 124371736 124371856 -157821808 + MIR SINE MIR 9 121 -141 1907 153 3 7 chr1 124371856 124372151 -157821513 - AluJb SINE Alu -18 294 1 541 224 46 82 chr1 124372151 124372226 -157821438 + MIR SINE MIR 121 197 -65 297 0 0 0 chr1 124373068 124373101 -157820563 + (CA)n Simple_repeat Simple_repeat 2 34 0 233 219 62 0 chr1 124373605 124373669 -157819995 + MER113 DNA MER1_type? 1 68 -453 227 302 12 12 chr1 124374911 124374997 -157818667 + L2 LINE L2 2580 2665 -649 315 293 67 63 chr1 124375121 124375360 -157818304 + L2 LINE L2 2848 3087 -185 718 274 6 0 chr1 124375424 124375603 -157818061 + MIR SINE MIR 12 191 -71 332 344 15 8 chr1 124375657 124375788 -157817876 + L2 LINE L2 3139 3270 -2 561 221 165 6 chr1 124375907 124376065 -157817599 - MIR SINE MIR -71 191 9 358 273 61 76 chr1 124380464 124380662 -157813002 - L2 LINE L2 -26 3287 3093 2229 81 3 3 chr1 124381195 124381502 -157812162 + AluSp SINE Alu 7 313 0 373 267 23 8 chr1 124381503 124381634 -157812030 + GA-rich Low_complexity Low_complexity 2 134 0 2218 81 27 0 chr1 124382218 124382515 -157811149 - AluSx SINE Alu -7 305 1 187 229 21 21 chr1 124382694 124382742 -157810922 + MIR SINE MIR 84 131 -77 2077 98 3 0 chr1 124382804 124383090 -157810574 + AluSg SINE Alu 1 287 -23 22 0 0 0 chr1 124384758 124384780 -157808884 + AT_rich Low_complexity Low_complexity 1 22 0 1856 71 4 68 chr1 124385070 124385351 -157808313 - AluSg SINE Alu -15 295 33 243 0 0 0 chr1 124385731 124385758 -157807906 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chr1 124385765 124385794 -157807870 + (TA)n Simple_repeat Simple_repeat 1 29 0 1742 156 3 19 chr1 124385794 124386101 -157807563 - AluJb SINE Alu -10 302 1 219 143 0 0 chr1 124387064 124387099 -157806565 - MIR3 SINE MIR -6 202 168 341 267 107 59 chr1 124387201 124387388 -157806276 - MIR SINE MIR -54 208 13 268 306 23 0 chr1 124387349 124387457 -157806207 + MIR SINE MIR 26 139 -69 * 371 250 10 10 chr1 124387509 124387605 -157806059 - MIR SINE MIR -121 141 46 219 36 0 0 chr1 124388320 124388348 -157805316 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 256 115 26 chr1 124388837 124388915 -157804749 + MIR SINE MIR 105 189 -73 243 79 0 0 chr1 124389908 124389946 -157803718 + (TG)n Simple_repeat Simple_repeat 1 38 0 219 320 61 34 chr1 124391362 124391509 -157802155 + L2 LINE L2 2821 2971 -301 271 282 106 12 chr1 124391977 124392062 -157801602 + MIR SINE MIR 20 112 -150 934 236 137 95 chr1 124392321 124392804 -157800860 + MLT1J LTR MaLR 1 503 -8 351 281 209 56 chr1 124392809 124393005 -157800659 + L2 LINE L2 3041 3266 -6 236 216 59 0 chr1 124393026 124393077 -157800587 + MIR SINE MIR 139 192 -70 2423 67 0 16 chr1 124393183 124393497 -157800167 - AluY SINE Alu -2 309 1 241 229 0 0 chr1 124393637 124393685 -157799979 - L2 LINE L2 -340 2974 2927 209 318 127 55 chr1 124394196 124394416 -157799248 - L2 LINE L2 -2 3311 3076 204 330 136 39 chr1 124394465 124394723 -157798941 - L2 LINE L2 -611 2703 2421 645 159 32 40 chr1 124395026 124395152 -157798512 - AluJb SINE Alu -177 135 11 599 250 151 48 chr1 124395240 124395512 -157798152 - L2 LINE L2 -2 3311 3012 201 277 72 0 chr1 124395562 124395645 -157798019 - L2 LINE L2 -941 2373 2285 290 292 14 0 chr1 124395687 124395759 -157797905 - L2 LINE L2 -1018 2296 2224 189 224 41 0 chr1 124395776 124395825 -157797839 - L2 LINE L2 -8 3264 3214 21 36 0 0 chr1 124396780 124396808 -157796856 + GC_rich Low_complexity Low_complexity 1 28 0 1716 155 17 0 chr1 124397557 124397848 -157795816 - AluJo SINE Alu -14 298 3 292 329 12 0 chr1 124397967 124398049 -157795615 - L2 LINE L2 -2 3270 3188 192 229 42 21 chr1 124398143 124398191 -157795473 + MER5B DNA MER1_type 1 49 -129 2040 96 7 14 chr1 124398364 124398656 -157795008 - AluSx SINE Alu -21 291 2 432 243 35 28 chr1 124398717 124398861 -157794803 - L1ME4a LINE L1 -13 6108 5964 21 36 0 0 chr1 124398861 124398889 -157794775 + AT_rich Low_complexity Low_complexity 1 28 0 1061 274 136 22 chr1 124398942 124399415 -157794249 + L2 LINE L2 2777 3301 -8 198 0 0 0 chr1 124399415 124399437 -157794227 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1158 214 87 22 chr1 124399442 124399765 -157793899 - MER2 DNA MER2_type 0 344 1 2722 16 0 0 chr1 124400192 124400499 -157793165 + AluY SINE Alu 1 307 -4 23 33 0 0 chr1 124400942 124400972 -157792692 + AT_rich Low_complexity Low_complexity 1 30 0 28 61 0 0 chr1 124402094 124402143 -157791521 + AT_rich Low_complexity Low_complexity 1 49 0 712 233 134 0 chr1 124403571 124403743 -157789921 - MIR SINE MIR 0 262 68 2282 104 0 0 chr1 124403789 124404096 -157789568 + AluSq SINE Alu 1 307 -6 206 213 0 62 chr1 124404454 124404513 -157789151 + (TA)n Simple_repeat Simple_repeat 1 55 -20 2087 80 3 14 chr1 124404513 124404799 -157788865 + AluY SINE Alu 17 299 -12 206 213 0 62 chr1 124404799 124404819 -157788845 + (TA)n Simple_repeat Simple_repeat 55 75 0 224 323 84 48 chr1 124404900 124405067 -157788597 + MIR3 SINE MIR 15 187 -21 22 70 0 0 chr1 124407946 124407989 -157785675 + AT_rich Low_complexity Low_complexity 1 43 0 533 219 82 27 chr1 124409390 124409536 -157784128 + MIR3 SINE MIR 52 205 -3 255 273 97 114 chr1 124410445 124410499 -157783165 - MIR3 SINE MIR -15 193 140 763 191 0 8 chr1 124410499 124410630 -157783034 - FLAM_A SINE Alu 0 133 4 255 273 97 114 chr1 124410630 124410751 -157782913 - MIR3 SINE MIR -68 140 21 259 307 79 57 chr1 124410828 124411056 -157782608 + L3 LINE CR1 1342 1574 -3 292 325 32 29 chr1 124412543 124412712 -157780952 + MIR SINE MIR 30 193 -62 681 254 68 17 chr1 124413018 124413195 -157780469 + MIR3 SINE MIR 8 193 -15 2154 122 3 0 chr1 124413909 124414220 -157779444 - AluSx SINE Alu 0 312 1 33 43 0 0 chr1 124417255 124417302 -157776362 + AT_rich Low_complexity Low_complexity 1 47 0 239 268 61 37 chr1 124417394 124417476 -157776188 + L3 LINE CR1 1493 1576 -1 745 171 0 8 chr1 124419678 124419795 -157773869 + FLAM_A SINE Alu 1 116 -17 397 217 46 46 chr1 124421784 124421936 -157771728 + L2 LINE L2 3101 3252 -61 1453 86 15 0 chr1 124422024 124422222 -157771442 - AluSg/x SINE Alu -15 295 95 214 349 47 9 chr1 124423417 124423523 -157770141 + L2 LINE L2 3150 3259 -13 193 238 0 0 chr1 124423648 124423690 -157769974 - L3 LINE CR1 -13 1564 1523 189 0 0 0 chr1 124423699 124423720 -157769944 + (A)n Simple_repeat Simple_repeat 1 21 0 2074 201 64 4 chr1 124424150 124424602 -157769062 + L1MD2 LINE L1 5628 6106 -253 369 0 0 0 chr1 124424603 124424644 -157769020 + (CA)n Simple_repeat Simple_repeat 1 41 0 987 168 14 24 chr1 124424645 124424853 -157768811 + L1MD2 LINE L1 6154 6359 0 213 111 0 67 chr1 124425306 124425351 -157768313 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 702 177 0 0 chr1 124425445 124425569 -157768095 + FLAM_A SINE Alu 13 136 -6 287 185 19 0 chr1 124426371 124426425 -157767239 + L2 LINE L2 3218 3272 0 1117 273 126 16 chr1 124427494 124428030 -157765634 - L2 LINE L2 0 3313 2706 348 267 128 5 chr1 124428082 124428248 -157765416 - MIR SINE MIR -50 212 24 551 287 43 18 chr1 124429014 124429178 -157764486 + MIR SINE MIR 13 180 -82 959 328 85 53 chr1 124429733 124430239 -157763425 + L3 LINE CR1 32 553 -1024 513 271 128 25 chr1 124430429 124430632 -157763032 + MIR SINE MIR 2 225 -37 3867 152 73 4 chr1 124430850 124431598 -157762066 - L1MB7 LINE L1 0 6184 5385 1426 271 70 18 chr1 124432014 124432471 -157761193 + L3 LINE CR1 745 1225 -352 382 276 94 37 chr1 124432496 124432710 -157760954 - MIR SINE MIR -28 234 4 939 204 78 33 chr1 124432838 124433083 -157760581 + MIR SINE MIR 2 257 -5 247 306 0 47 chr1 124433094 124433179 -157760485 + L2 LINE L2 2582 2662 -652 247 161 32 0 chr1 124433179 124433241 -157760423 + (TA)n Simple_repeat Simple_repeat 1 64 0 1163 193 25 0 chr1 124433258 124433460 -157760204 - AluJb SINE Alu -105 207 1 2496 73 0 7 chr1 124433469 124433772 -157759892 - AluY SINE Alu -10 301 1 216 268 0 18 chr1 124433778 124433834 -157759830 + L2 LINE L2 2694 2748 -566 183 143 0 29 chr1 124433822 124433857 -157759807 + L2 LINE L2 3239 3272 0 * 685 229 14 0 chr1 124435107 124435247 -157758417 - MIR SINE MIR -92 170 29 496 251 113 9 chr1 124435739 124435897 -157757767 - MIR SINE MIR -62 146 20 3020 107 7 4 chr1 124435956 124436599 -157757065 - L1PA13 LINE L1 -482 5681 5039 2983 81 110 7 chr1 124436599 124437046 -157756618 + L1PA13 LINE L1 5671 6163 0 982 188 28 6 chr1 124437333 124437509 -157756155 - MER5A DNA MER1_type 0 189 10 186 250 92 13 chr1 124437539 124437615 -157756049 - MIR3 SINE MIR -6 202 121 559 279 90 100 chr1 124437755 124438328 -157755336 - L2 LINE L2 -37 3235 2544 623 335 66 39 chr1 124438438 124438877 -157754787 + L2 LINE L2 2820 3270 -2 381 236 28 0 chr1 124438972 124439044 -157754620 + L2 LINE L2 3240 3313 0 361 285 138 37 chr1 124439379 124439733 -157753931 + L1MEd LINE L1 561 950 -5169 5704 34 0 12 chr1 124440224 124440863 -157752801 + SVA Other Other 756 1386 0 579 262 41 6 chr1 124442248 124442420 -157751244 + MIR SINE MIR 24 201 -61 279 300 27 27 chr1 124442499 124442609 -157751055 - L3 LINE CR1 -221 1356 1247 393 322 48 7 chr1 124442713 124442859 -157750805 + MIR SINE MIR 20 171 -91 226 154 0 58 chr1 124442906 124442958 -157750706 + L2 LINE L2 3169 3217 -96 248 370 16 0 chr1 124443509 124443636 -157750028 + L2 LINE L2 3144 3272 0 374 274 111 21 chr1 124443920 124444110 -157749554 + L1MC5 LINE L1 7719 7925 -36 835 301 8 30 chr1 124444951 124445187 -157748477 - MIR SINE MIR -19 243 13 322 268 183 24 chr1 124446700 124446864 -157746800 + MIR SINE MIR 3 192 -70 279 282 53 53 chr1 124446869 124447039 -157746625 + L1MEd LINE L1 2 171 -5948 412 285 60 58 chr1 124447289 124447514 -157746150 + L1MEd LINE L1 561 784 -5335 2137 158 3 25 chr1 124447514 124447693 -157745971 + MER7A DNA MER2_type 2 169 -2869 2207 120 0 0 chr1 124447693 124447993 -157745671 + AluSg SINE Alu 1 300 -10 2137 158 3 25 chr1 124447993 124448168 -157745496 + MER7A DNA MER2_type 169 346 0 412 285 60 58 chr1 124448168 124448440 -157745224 + L1MEd LINE L1 784 1059 -5060 2556 70 0 0 chr1 124449599 124449901 -157743763 - AluY SINE Alu -9 302 1 291 54 0 0 chr1 124449944 124449981 -157743683 + (TG)n Simple_repeat Simple_repeat 1 37 0 314 274 26 44 chr1 124450040 124450153 -157743511 - L2 LINE L2 -16 3256 3146 281 273 13 0 chr1 124451425 124451502 -157742162 + MIR SINE MIR 59 136 -72 240 381 38 0 chr1 124452268 124452428 -157741236 + MIR SINE MIR 74 239 -23 662 284 28 33 chr1 124452815 124453026 -157740638 - MIR SINE MIR -19 243 34 419 257 30 0 chr1 124454062 124454163 -157739501 - MIR SINE MIR -75 187 84 231 229 33 16 chr1 124454159 124454220 -157739444 - MIR SINE MIR 0 262 201 * 243 314 51 29 chr1 124454442 124454579 -157739085 - L2 LINE L2 -12 3301 3162 281 316 41 20 chr1 124455356 124455454 -157738210 - MIR SINE MIR -59 149 50 182 167 0 24 chr1 124455575 124455617 -157738047 + CT-rich Low_complexity Low_complexity 1 41 0 1743 195 69 38 chr1 124455637 124456089 -157737575 + MER31B LTR ERV1 1 466 0 595 296 43 0 chr1 124456299 124456485 -157737179 - MIR SINE MIR -19 243 50 182 268 42 28 chr1 124456715 124456786 -157736878 - L2 LINE L2 -1 3271 3200 359 307 18 54 chr1 124456904 124457070 -157736594 - MIR SINE MIR -52 210 51 708 93 78 47 chr1 124457300 124457429 -157736235 - L1PB2 LINE L1 -9 6142 6010 448 290 65 76 chr1 124457448 124457710 -157735954 + L1ME LINE L1 5379 5637 -484 225 286 0 0 chr1 124457729 124457792 -157735872 + L1P3 LINE L1 5685 5747 -407 345 100 0 0 chr1 124458321 124458371 -157735293 + (CA)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr1 124459272 124459297 -157734367 + AT_rich Low_complexity Low_complexity 1 25 0 369 167 15 0 chr1 124459297 124459363 -157734301 - AluJ/FRAM SINE Alu -12 290 224 235 264 46 35 chr1 124460075 124460162 -157733502 - MIR SINE MIR -117 145 58 339 306 111 56 chr1 124460174 124460598 -157733066 + L2 LINE L2 2590 3033 -239 1863 167 58 31 chr1 124460956 124461404 -157732260 + MLT1C LTR MaLR 6 465 -2 188 388 29 10 chr1 124461405 124461508 -157732156 + L2 LINE L2 3161 3265 -7 207 309 160 0 chr1 124461566 124461660 -157732004 - MIR SINE MIR -66 142 34 3063 133 59 35 chr1 124462527 124463105 -157730559 - L1MB3 LINE L1 -1 6182 5591 303 301 173 13 chr1 124463198 124463354 -157730310 - MIR SINE MIR -38 224 44 307 213 158 114 chr1 124463926 124464128 -157729536 - MIR SINE MIR -3 259 49 946 192 66 84 chr1 124464765 124464867 -157728797 + MER113 DNA MER1_type? 235 337 -184 2880 144 52 13 chr1 124464867 124465345 -157728319 + LOR1a LTR ERV1 1 497 0 946 192 66 84 chr1 124465345 124465528 -157728136 + MER113 DNA MER1_type? 337 515 -6 409 190 92 49 chr1 124465884 124466068 -157727596 - L1ME4a LINE L1 -2 6119 5928 417 285 37 58 chr1 124466239 124466534 -157727130 - L1ME4a LINE L1 -2265 5543 5255 736 247 22 16 chr1 124467097 124467205 -157726459 - MIR SINE MIR 0 262 151 1376 142 49 0 chr1 124467205 124467430 -157726234 - MER46A DNA MER2_type 0 236 1 736 247 22 16 chr1 124467430 124467503 -157726161 - MIR SINE MIR -111 151 80 566 232 70 0 chr1 124467871 124468013 -157725651 - MIR SINE MIR -6 256 105 271 379 59 0 chr1 124469740 124469893 -157723771 - L2 LINE L2 -822 2492 2331 260 266 64 98 chr1 124469973 124470146 -157723518 + L2 LINE L2 2223 2389 -925 419 223 169 54 chr1 124470410 124470540 -157723124 + L2 LINE L2 3169 3313 0 240 352 52 43 chr1 124470543 124470753 -157722911 + L2 LINE L2 2702 2913 -401 509 224 88 0 chr1 124470782 124470907 -157722757 - MER96 DNA MER1_type? -3 172 37 1150 140 171 46 chr1 124470921 124471272 -157722392 + Charlie1 DNA MER1_type 2366 2760 -1 2053 104 215 8 chr1 124471564 124471918 -157721746 + MSTA LTR MaLR 1 427 -1 294 270 132 66 chr1 124472043 124472195 -157721469 - MER5B DNA MER1_type -16 162 1 225 354 15 0 chr1 124473749 124473814 -157719850 - MIR SINE MIR -74 134 69 986 298 153 14 chr1 124474814 124475244 -157718420 - L3 LINE CR1 -1 1576 1087 4065 136 28 2 chr1 124475671 124476290 -157717374 + MER41B LTR ERV1 1 635 0 187 259 52 0 chr1 124477060 124477118 -157716546 - MIR SINE MIR -119 143 83 294 313 78 54 chr1 124477325 124477555 -157716109 - MIR SINE MIR -2 260 21 579 214 29 14 chr1 124477759 124477899 -157715765 - MIR SINE MIR -91 171 30 391 322 106 24 chr1 124477890 124478098 -157715566 - L3 LINE CR1 -487 1090 866 * 2031 170 43 28 chr1 124478122 124478545 -157715119 - L1MC3 LINE L1 -284 7501 7073 809 326 106 68 chr1 124478574 124478722 -157714942 - L3 LINE CR1 -794 783 642 2148 58 0 4 chr1 124478722 124479031 -157714633 + AluSg SINE Alu 28 335 0 809 326 106 68 chr1 124479031 124479617 -157714047 - L3 LINE CR1 -935 642 20 794 234 133 5 chr1 124479943 124480161 -157713503 - MIR SINE MIR 0 262 17 1636 191 23 29 chr1 124480235 124480585 -157713079 - MLT1A1 LTR MaLR 0 365 18 380 222 61 0 chr1 124481188 124481287 -157712377 - L2 LINE L2 -6 3307 3203 300 250 83 95 chr1 124481849 124482017 -157711647 + MIR SINE MIR 72 237 -25 180 331 103 65 chr1 124484599 124484889 -157708775 + L2 LINE L2 447 747 -2567 1025 296 171 39 chr1 124484894 124485936 -157707728 + L2 LINE L2 1291 2469 -845 876 262 22 22 chr1 124485938 124486163 -157707501 - MIR SINE MIR -26 236 12 296 326 33 31 chr1 124486296 124486422 -157707242 + L2 LINE L2 2744 2867 -405 650 202 16 0 chr1 124486422 124486551 -157707113 + MER94 DNA DNA 4 134 0 296 326 33 31 chr1 124486551 124486668 -157706996 + L2 LINE L2 2867 2982 -290 324 0 0 0 chr1 124486740 124486776 -157706888 + (CTG)n Simple_repeat Simple_repeat 1 36 0 395 303 109 0 chr1 124486819 124486938 -157706726 + MIR SINE MIR 1 132 -130 270 167 42 0 chr1 124487009 124487057 -157706607 - L2 LINE L2 -3 3269 3220 * 520 275 71 49 chr1 124487024 124487262 -157706402 - MIR SINE MIR -14 248 8 355 204 80 0 chr1 124487264 124487352 -157706312 + L2 LINE L2 3140 3234 -38 204 67 0 0 chr1 124487659 124487689 -157705975 + (TG)n Simple_repeat Simple_repeat 2 31 0 359 331 69 12 chr1 124488972 124489132 -157704532 + MIR SINE MIR 24 192 -70 250 232 26 80 chr1 124489225 124489376 -157704288 + CT-rich Low_complexity Low_complexity 5 147 0 273 288 0 15 chr1 124489990 124490056 -157703608 + MER91A DNA MER1_type 116 180 -16 243 306 48 16 chr1 124490842 124490966 -157702698 + MER5A DNA MER1_type 36 163 -26 303 308 121 95 chr1 124491360 124491675 -157701989 + L2 LINE L2 2948 3270 -2 183 271 252 19 chr1 124491686 124491793 -157701871 + L2 LINE L2 3181 3312 -1 412 339 36 36 chr1 124491931 124492099 -157701565 + L2 LINE L2 3101 3268 -4 207 292 0 0 chr1 124492457 124492505 -157701159 - L2 LINE L2 -16 3297 3250 447 307 24 0 chr1 124493350 124493477 -157700187 - MIR SINE MIR -52 210 81 240 240 47 101 chr1 124493546 124493675 -157699989 + MIR SINE MIR 88 209 -53 195 270 63 16 chr1 124493720 124493783 -157699881 + MIR SINE MIR 9 74 -188 1024 242 25 52 chr1 124493792 124494118 -157699546 + L2 LINE L2 2997 3313 0 348 268 146 0 chr1 124494124 124494247 -157699417 + MIR SINE MIR 118 258 -4 268 388 0 0 chr1 124494245 124494348 -157699316 + L2 LINE L2 3207 3309 -4 * 300 106 0 0 chr1 124494554 124494601 -157699063 - MER53 DNA DNA -4 185 139 837 254 84 15 chr1 124496039 124496402 -157697262 - LTR33 LTR ERVL -27 494 76 204 342 62 31 chr1 124496620 124496781 -157696883 + MIR SINE MIR 82 247 -15 235 375 0 16 chr1 124497438 124497566 -157696098 - MIR SINE MIR -7 255 130 344 280 121 45 chr1 124498223 124498380 -157695284 - MIR SINE MIR -6 256 88 264 350 18 44 chr1 124498393 124498619 -157695045 + L2 LINE L2 2397 2616 -698 942 179 134 24 chr1 124498737 124498983 -157694681 + ORSL DNA AcHobo 3 275 0 427 189 0 0 chr1 124498995 124499069 -157694595 - MER81 DNA DNA -39 75 2 647 288 89 26 chr1 124499083 124499513 -157694151 + L2 LINE L2 2618 3131 -182 270 255 214 10 chr1 124499939 124500037 -157693627 - L3b LINE CR1 -193 1390 1273 457 277 0 0 chr1 124500074 124500186 -157693478 - MIR SINE MIR 0 262 151 709 260 43 24 chr1 124500473 124500681 -157692983 - MIR SINE MIR -14 248 37 886 188 35 0 chr1 124502521 124502691 -157690973 - MER58A DNA MER1_type -1 223 48 800 274 85 5 chr1 124502923 124503135 -157690529 + MIR SINE MIR 9 237 -25 609 291 36 0 chr1 124503395 124503560 -157690104 - MIR SINE MIR -11 251 81 715 317 81 44 chr1 124503734 124504433 -157689231 - L2 LINE L2 -212 3060 2337 214 294 33 33 chr1 124505480 124505572 -157688092 - MIR SINE MIR -4 258 167 2005 160 0 3 chr1 124506016 124506323 -157687341 - AluJb SINE Alu -6 306 1 28 48 0 0 chr1 124506374 124506416 -157687248 + AT_rich Low_complexity Low_complexity 1 42 0 231 140 35 18 chr1 124506424 124506481 -157687183 - L1MC1 LINE L1 0 6333 6276 1859 180 0 13 chr1 124506515 124506883 -157686781 - AluJb SINE Alu 0 364 1 450 0 0 0 chr1 124506898 124506948 -157686716 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 175 0 0 chr1 124506955 124506995 -157686669 - MARNA DNA Mariner -313 273 234 728 160 0 8 chr1 124506995 124507114 -157686550 + FLAM_A SINE Alu 21 138 -4 407 338 20 0 chr1 124507114 124507265 -157686399 - MARNA DNA Mariner -347 239 86 279 323 32 8 chr1 124507162 124507286 -157686378 + MARNA DNA Mariner 394 520 -66 * 679 229 149 17 chr1 124507332 124507507 -157686157 + MIR SINE MIR 53 250 -12 597 296 71 15 chr1 124508159 124508406 -157685258 + MIR SINE MIR 3 260 -2 2018 155 169 39 chr1 124508406 124508891 -157684773 + MER44D DNA MER2_type 1 603 -2 388 279 95 14 chr1 124508916 124509063 -157684601 - MIR SINE MIR 0 262 104 1327 144 9 42 chr1 124509066 124509281 -157684383 - AluJo SINE Alu -18 294 87 339 290 21 21 chr1 124509298 124509391 -157684273 - MIR SINE MIR -167 95 3 297 309 122 8 chr1 124509959 124510082 -157683582 - MIR SINE MIR -34 228 92 224 279 98 0 chr1 124510137 124510198 -157683466 - MIR SINE MIR -175 87 21 186 103 0 0 chr1 124510229 124510258 -157683406 + (CA)n Simple_repeat Simple_repeat 2 30 0 684 240 41 0 chr1 124510398 124510544 -157683120 - MIR SINE MIR -50 212 61 262 281 52 10 chr1 124510605 124510701 -157682963 + LTR50 LTR ERVL 102 201 -594 236 285 89 49 chr1 124511099 124511222 -157682442 - L2 LINE L2 0 3272 3145 587 339 142 27 chr1 124511362 124512397 -157681267 - L2 LINE L2 -358 2956 1803 * 673 189 28 14 chr1 124512390 124512533 -157681131 - MIR SINE MIR 0 262 118 405 203 180 8 chr1 124512633 124512761 -157680903 - MER103 DNA DNA -8 158 9 225 339 0 0 chr1 124513200 124513262 -157680402 - L2 LINE L2 -2 3311 3250 448 258 97 71 chr1 124514627 124514894 -157678770 - MARNA DNA Mariner -32 554 281 336 146 145 48 chr1 124516480 124516584 -157677080 + MIR SINE MIR 30 144 -64 261 240 13 53 chr1 124517331 124517406 -157676258 - L2 LINE L2 0 3272 3201 251 246 0 43 chr1 124517502 124517571 -157676093 - L2 LINE L2 -2 3270 3205 815 209 81 37 chr1 124518233 124518472 -157675192 - MIR SINE MIR 0 262 18 1975 183 92 56 chr1 124519096 124519598 -157674066 + MLT2B1 LTR ERVL 1 520 0 834 220 33 23 chr1 124520212 124520426 -157673238 + MIR SINE MIR 45 260 -2 398 289 58 0 chr1 124522022 124522143 -157671521 + MIR3 SINE MIR 81 208 0 219 346 62 10 chr1 124523280 124523488 -157670176 + L2 LINE L2 2628 2846 -468 357 272 152 0 chr1 124523513 124523638 -157670026 - MIR SINE MIR -19 243 100 290 296 70 9 chr1 124523707 124523822 -157669842 + L2 LINE L2 2934 3055 -217 443 287 39 55 chr1 124523847 124524028 -157669636 - MIR SINE MIR -72 190 13 257 212 250 23 chr1 124524143 124524275 -157669389 - MIR SINE MIR 0 262 101 660 340 86 46 chr1 124525093 124525173 -157668491 + L3 LINE CR1 324 399 -1178 1283 112 17 77 chr1 124525173 124525406 -157668258 - MER20 DNA MER1_type 0 219 1 660 340 86 46 chr1 124525406 124525781 -157667883 + L3 LINE CR1 399 797 -780 2397 85 7 0 chr1 124526004 124526298 -157667366 - AluSq SINE Alu -17 296 1 1444 273 94 17 chr1 124526377 124526919 -157666745 + L3 LINE CR1 782 1365 -212 558 275 30 45 chr1 124526947 124527147 -157666517 - MIR SINE MIR 0 262 66 203 227 27 45 chr1 124528677 124528731 -157664933 + (CAGAGA)n Simple_repeat Simple_repeat 2 55 -54 2351 94 13 0 chr1 124528731 124529038 -157664626 + AluSx SINE Alu 1 311 -1 203 227 27 45 chr1 124529038 124529093 -157664571 + (CAGAGA)n Simple_repeat Simple_repeat 55 109 0 231 218 18 0 chr1 124529641 124529696 -157663968 + L2 LINE L2 2931 2986 -327 * 237 298 77 99 chr1 124529692 124529873 -157663791 - L2 LINE L2 -6 3307 3131 301 190 320 0 chr1 124529885 124529985 -157663679 - MER4C LTR ERV1 -31 434 303 3239 267 93 25 chr1 124530096 124531326 -157662338 - L2 LINE L2 -159 3154 1823 719 250 109 18 chr1 124531338 124531558 -157662106 + MIR SINE MIR 4 243 -19 495 285 122 19 chr1 124531561 124531824 -157661840 - L2 LINE L2 -1475 1839 1550 431 283 219 15 chr1 124531841 124532106 -157661558 + L2 LINE L2 2995 3313 0 496 320 121 42 chr1 124532159 124532267 -157661397 - L2 LINE L2 -1 3271 3173 413 50 17 0 chr1 124532267 124532327 -157661337 + (TG)n Simple_repeat Simple_repeat 2 62 0 496 320 121 42 chr1 124532327 124532549 -157661115 - L2 LINE L2 -99 3173 2915 489 256 120 66 chr1 124532803 124533061 -157660603 - L2 LINE L2 -2 3311 3040 421 230 39 165 chr1 124533366 124533753 -157659911 - L2 LINE L2 -10 3262 2925 286 267 86 35 chr1 124534029 124534218 -157659446 - L2 LINE L2 -731 2583 2325 864 290 94 28 chr1 124534254 124534906 -157658758 + L2 LINE L2 2582 3280 -33 388 217 0 38 chr1 124535205 124535554 -157658110 + GA-rich Low_complexity Low_complexity 1 335 0 25 31 0 0 chr1 124535733 124535765 -157657899 + AT_rich Low_complexity Low_complexity 1 32 0 235 357 76 6 chr1 124536385 124536556 -157657108 - MIR SINE MIR -54 208 26 194 268 0 0 chr1 124536758 124536808 -157656856 - MIR SINE MIR -113 149 101 203 282 64 51 chr1 124536870 124536948 -157656716 + MIR SINE MIR 69 147 -115 805 223 139 5 chr1 124537082 124537297 -157656367 + MIR SINE MIR 15 258 -4 340 234 27 63 chr1 124537308 124537419 -157656245 + L2 LINE L2 3142 3248 -24 532 290 109 6 chr1 124538346 124538529 -157655135 + MIR SINE MIR 20 221 -41 223 410 67 0 chr1 124538781 124538886 -157654778 + L2 LINE L2 3111 3222 -50 224 347 61 20 chr1 124539566 124539664 -157654000 + MIR SINE MIR 147 248 -14 336 260 30 20 chr1 124540844 124540944 -157652720 + MIR SINE MIR 68 168 -94 2547 77 3 0 chr1 124541005 124541316 -157652348 + AluSq SINE Alu 1 312 -1 199 275 72 58 chr1 124541590 124541728 -157651936 - L2 LINE L2 -1 3312 3173 256 268 0 42 chr1 124541801 124541872 -157651792 - L2 LINE L2 0 3272 3205 333 266 58 58 chr1 124542191 124542345 -157651319 - MIR3 SINE MIR -8 200 47 763 236 69 57 chr1 124542940 124543186 -157650478 + MIR SINE MIR 12 260 -2 240 170 21 0 chr1 124543227 124543274 -157650390 + L2 LINE L2 3257 3304 -9 223 303 13 0 chr1 124543275 124543351 -157650313 + (CATA)n Simple_repeat Simple_repeat 2 78 0 194 374 88 0 chr1 124545837 124545984 -157647680 + MER5A DNA MER1_type 3 162 -27 486 275 38 38 chr1 124546057 124546217 -157647447 - MER5B DNA MER1_type 0 178 19 305 279 36 79 chr1 124546249 124546389 -157647275 - MIR SINE MIR -59 149 16 246 141 127 58 chr1 124547639 124547731 -157645933 + MLT1E LTR MaLR 40 140 -427 998 218 0 10 chr1 124547843 124548036 -157645628 + MLT1F1 LTR MaLR 374 564 -3 231 291 0 0 chr1 124548306 124548361 -157645303 - L2 LINE L2 0 3313 3259 517 270 65 32 chr1 124548503 124548688 -157644976 - MIR SINE MIR -5 257 67 486 223 26 56 chr1 124548717 124548860 -157644804 - MIR SINE MIR -46 162 12 513 265 105 17 chr1 124550078 124550259 -157643405 + MIR SINE MIR 66 262 0 183 80 0 0 chr1 124550426 124550451 -157643213 + (TC)n Simple_repeat Simple_repeat 1 25 0 185 250 66 40 chr1 124551021 124551097 -157642567 + L3 LINE CR1 1473 1550 -27 303 191 95 24 chr1 124551832 124551916 -157641748 - L2 LINE L2 0 3313 3224 558 275 30 45 chr1 124552547 124552747 -157640917 + MIR SINE MIR 66 262 0 1432 275 94 17 chr1 124552775 124553317 -157640347 - L3 LINE CR1 -212 1365 782 2552 84 0 0 chr1 124553396 124553706 -157639958 + AluSg SINE Alu 1 310 0 231 218 18 0 chr1 124554309 124554364 -157639300 + L2 LINE L2 2931 2986 -327 * 251 299 75 96 chr1 124554360 124554547 -157639117 - L2 LINE L2 -6 3307 3125 301 190 320 0 chr1 124554554 124554654 -157639010 - MER4C LTR ERV1 -31 434 303 3250 269 92 25 chr1 124554765 124555996 -157637668 - L2 LINE L2 -159 3154 1823 719 250 109 18 chr1 124556008 124556228 -157637436 + MIR SINE MIR 4 243 -19 497 285 122 19 chr1 124556231 124556494 -157637170 - L2 LINE L2 -1475 1839 1550 416 287 219 15 chr1 124556511 124556776 -157636888 + L2 LINE L2 2995 3313 0 482 323 121 42 chr1 124556829 124556937 -157636727 - L2 LINE L2 -1 3271 3173 413 50 17 0 chr1 124556937 124556997 -157636667 + (TG)n Simple_repeat Simple_repeat 2 62 0 482 323 121 42 chr1 124556997 124557219 -157636445 - L2 LINE L2 -99 3173 2915 271 270 22 45 chr1 124557475 124557564 -157636100 - L2 LINE L2 -3 3310 3224 831 162 21 0 chr1 124557709 124557851 -157635813 + Tigger3(Golem) DNA MER2_type 2894 3038 0 4472 248 52 26 chr1 124557854 124558114 -157635550 + L1MEc LINE L1 574 826 -5389 1574 199 57 0 chr1 124558114 124558396 -157635268 + AluJb SINE Alu 13 310 -2 4472 248 52 26 chr1 124558396 124559943 -157633721 + L1MEc LINE L1 826 2470 -3745 2630 55 0 3 chr1 124559943 124560250 -157633414 + AluY SINE Alu 1 306 -5 4472 248 52 26 chr1 124560250 124561480 -157632184 + L1MEc LINE L1 2470 3666 -2549 733 224 207 49 chr1 124561479 124561783 -157631881 + L1MEc LINE L1 3918 4269 -1946 * 306 240 0 96 chr1 124561804 124561929 -157631735 + MIR SINE MIR 150 262 0 197 244 47 93 chr1 124562136 124562222 -157631442 - MIR SINE MIR -70 192 111 217 182 0 0 chr1 124562558 124562591 -157631073 + L2 LINE L2 3228 3260 -12 241 280 108 11 chr1 124562913 124563006 -157630658 - L2 LINE L2 -46 3226 3125 1179 257 96 52 chr1 124563559 124564084 -157629580 - L2 LINE L2 0 3313 2762 412 280 33 89 chr1 124565537 124565751 -157627913 - MIR SINE MIR -6 256 55 578 239 75 10 chr1 124565884 124566165 -157627499 - LTR33 LTR ERVL -58 463 86 204 156 0 0 chr1 124566907 124566937 -157626727 - L2 LINE L2 0 3272 3243 957 199 71 18 chr1 124566937 124567163 -157626501 + MIR SINE MIR 1 238 -24 560 289 64 11 chr1 124567190 124567377 -157626287 + MIR SINE MIR 29 225 -37 596 223 74 20 chr1 124567489 124567637 -157626027 + MIR3 SINE MIR 38 193 -15 366 295 58 47 chr1 124568597 124568787 -157624877 - L2 LINE L2 0 3313 3122 484 274 201 6 chr1 124569728 124569892 -157623772 - MIR SINE MIR -54 208 13 530 246 138 24 chr1 124569951 124570118 -157623546 + MIR SINE MIR 6 191 -71 499 268 202 10 chr1 124570767 124570965 -157622699 - MIR SINE MIR 0 262 27 358 274 92 12 chr1 124571025 124571189 -157622475 - MIR3 SINE MIR -26 182 6 702 306 10 10 chr1 124571457 124571663 -157622001 - MIR SINE MIR -8 254 49 215 208 0 38 chr1 124572080 124572133 -157621531 + CT-rich Low_complexity Low_complexity 2 52 0 376 223 160 0 chr1 124572133 124572227 -157621437 - L2 LINE L2 -1 3271 3163 1075 236 111 43 chr1 124572306 124572729 -157620935 + L2 LINE L2 2862 3313 0 250 299 34 48 chr1 124575152 124575296 -157618368 + MIR SINE MIR 55 196 -62 860 225 33 70 chr1 124575525 124575854 -157617810 + L1MC4a LINE L1 5869 6185 -1623 737 302 48 32 chr1 124575966 124576218 -157617446 + MIR SINE MIR 7 262 0 784 192 67 56 chr1 124576384 124576792 -157616872 - MLT1D LTR MaLR 0 505 1 1754 133 20 3 chr1 124576865 124577166 -157616498 - L1MB3 LINE L1 -43 6140 5835 203 324 42 35 chr1 124577388 124577427 -157616237 + MIR SINE MIR 116 153 -109 1665 275 15 87 chr1 124577427 124577831 -157615833 + THE1C LTR MaLR 1 375 0 203 324 42 35 chr1 124577831 124577933 -157615731 + MIR SINE MIR 153 258 -4 249 338 0 0 chr1 124578625 124578702 -157614962 + MIR3 SINE MIR 78 154 -54 202 229 21 0 chr1 124579145 124579193 -157614471 + (TG)n Simple_repeat Simple_repeat 2 50 0 903 292 34 9 chr1 124579251 124579484 -157614180 + MIR SINE MIR 24 262 0 23 33 0 0 chr1 124580072 124580102 -157613562 + AT_rich Low_complexity Low_complexity 1 30 0 222 311 27 0 chr1 124580146 124580220 -157613444 - MIR SINE MIR -14 248 173 229 253 126 56 chr1 124580924 124581201 -157612463 - L2 LINE L2 -227 3045 2741 364 188 106 0 chr1 124581343 124581428 -157612236 + L2 LINE L2 3174 3267 -5 187 358 67 39 chr1 124582438 124582617 -157611047 + L2 LINE L2 2715 2898 -416 440 269 9 0 chr1 124582635 124582743 -157610921 - MIR3 SINE MIR -5 203 95 1072 260 128 0 chr1 124582883 124583395 -157610269 - L2 LINE L2 -2 3311 2722 424 198 59 10 chr1 124583509 124583610 -157610054 + MER5A DNA MER1_type 4 109 -80 6575 55 12 5 chr1 124583744 124585149 -157608515 - L1PA7 LINE L1 0 6154 4748 456 254 23 8 chr1 124585218 124585348 -157608316 + MER5B DNA MER1_type 1 132 -46 184 194 0 0 chr1 124585382 124585418 -157608246 + MER5B DNA MER1_type 138 173 -5 519 264 39 0 chr1 124585437 124585566 -157608098 + L2 LINE L2 3175 3308 -5 242 321 0 24 chr1 124586637 124586721 -157606943 - MIR SINE MIR -3 259 178 * 384 250 80 85 chr1 124586720 124586896 -157606768 - L2 LINE L2 0 3313 3139 311 268 65 46 chr1 124587300 124587453 -157606211 - MIR SINE MIR -98 164 9 590 295 0 0 chr1 124587924 124588073 -157605591 - MIR3 SINE MIR -20 188 40 319 257 153 42 chr1 124588288 124588432 -157605232 - MIR SINE MIR -91 171 12 250 231 0 46 chr1 124589215 124589280 -157604384 + L2 LINE L2 3211 3272 0 267 250 16 0 chr1 124589503 124589567 -157604097 + L2 LINE L2 3247 3311 -2 409 267 30 30 chr1 124589930 124590065 -157603599 - MIR SINE MIR -20 242 108 741 216 106 47 chr1 124590393 124590629 -157603035 + MIR SINE MIR 13 262 0 194 300 89 0 chr1 124591112 124591202 -157602462 - L3b LINE CR1 -249 1334 1237 853 210 14 14 chr1 124591451 124591670 -157601994 - L1 LINE L1 -3818 2328 2110 539 226 95 7 chr1 124591776 124591913 -157601751 - L2 LINE L2 0 3313 3165 448 314 70 17 chr1 124591896 124592148 -157601516 - MIR SINE MIR 0 262 1 * 221 348 43 43 chr1 124594199 124594314 -157599350 + L2 LINE L2 2948 3062 -210 699 209 43 71 chr1 124594318 124594420 -157599244 + MER112 DNA MER1_type 3 106 -154 2186 117 0 0 chr1 124594420 124594727 -157598937 - AluSx SINE Alu 0 307 1 699 209 43 71 chr1 124594727 124594876 -157598788 + MER112 DNA MER1_type 106 248 -12 231 274 88 0 chr1 124594955 124595057 -157598607 + L2 LINE L2 3162 3272 0 183 267 99 10 chr1 124595253 124595354 -157598310 - L2 LINE L2 -782 2532 2423 2009 111 37 0 chr1 124595416 124595687 -157597977 + AluSq SINE Alu 12 292 -21 243 0 0 0 chr1 124595803 124595830 -157597834 + (A)n Simple_repeat Simple_repeat 1 27 0 235 280 27 13 chr1 124595840 124595915 -157597749 - MIR SINE MIR 0 262 187 222 306 0 0 chr1 124595915 124595977 -157597687 - MIR SINE MIR -181 81 20 860 233 165 24 chr1 124596205 124596544 -157597120 - L2 LINE L2 0 3313 2927 644 262 56 14 chr1 124597575 124597789 -157595875 - MIR SINE MIR 0 262 32 467 247 153 9 chr1 124598541 124598935 -157594729 + LTR33 LTR ERVL 26 521 0 330 307 31 126 chr1 124599673 124599791 -157593873 + L2 LINE L2 2918 3046 -226 1692 164 0 19 chr1 124599791 124600086 -157593578 + AluJo SINE Alu 21 310 0 330 307 31 126 chr1 124600086 124600354 -157593310 + L2 LINE L2 3046 3268 -4 238 323 48 40 chr1 124600411 124600535 -157593129 - L2 LINE L2 -11 3261 3137 660 267 0 28 chr1 124600567 124600743 -157592921 - MIR SINE MIR 0 262 92 263 238 16 16 chr1 124601488 124601551 -157592113 - MIR SINE MIR -58 150 88 402 277 38 28 chr1 124602041 124602200 -157591464 + MIR3 SINE MIR 45 205 -3 996 211 59 0 chr1 124602357 124602561 -157591103 + MER58A DNA MER1_type 9 224 0 2356 93 40 48 chr1 124604454 124604832 -157588832 + THE1C LTR MaLR 1 375 0 194 272 132 22 chr1 124606368 124606504 -157587160 + MIR3 SINE MIR 10 160 -48 401 302 102 19 chr1 124606738 124606952 -157586712 - MIR SINE MIR -17 245 1 965 240 85 106 chr1 124607356 124607911 -157585753 + MLT1H LTR MaLR 7 549 0 862 203 71 19 chr1 124607994 124608206 -157585458 + MIR SINE MIR 13 235 -27 405 293 14 34 chr1 124608265 124608412 -157585252 + L3b LINE CR1 1263 1406 -177 459 0 0 0 chr1 124610083 124610134 -157583530 + (CA)n Simple_repeat Simple_repeat 1 51 0 211 188 21 0 chr1 124610526 124610574 -157583090 - L2 LINE L2 -17 3255 3207 210 390 10 10 chr1 124611404 124611504 -157582160 + L3 LINE CR1 1339 1438 -139 2273 97 13 13 chr1 124611507 124611815 -157581849 + AluSx SINE Alu 5 312 0 570 201 50 7 chr1 124612427 124612566 -157581098 - MIR3 SINE MIR -41 167 23 261 311 245 14 chr1 124614082 124614294 -157579370 + MIR SINE MIR 2 262 0 324 320 25 8 chr1 124614331 124614453 -157579211 - L3b LINE CR1 -227 1356 1233 319 300 90 40 chr1 124614604 124614648 -157579016 + L2 LINE L2 3102 3142 -171 1948 138 0 0 chr1 124614648 124614923 -157578741 - AluSq SINE Alu 0 313 39 319 300 90 40 chr1 124614923 124615078 -157578586 + L2 LINE L2 3142 3311 -2 287 180 0 0 chr1 124615117 124615167 -157578497 + L2 LINE L2 3004 3053 -219 259 307 95 29 chr1 124615302 124615439 -157578225 + MIR SINE MIR 28 173 -89 21 0 0 0 chr1 124615855 124615876 -157577788 + AT_rich Low_complexity Low_complexity 1 21 0 205 178 0 0 chr1 124615940 124615985 -157577679 + A-rich Low_complexity Low_complexity 1 45 0 276 345 145 28 chr1 124616177 124616675 -157576989 + L2 LINE L2 2148 2703 -611 2839 7 0 3 chr1 124616813 124617117 -157576547 - AluYa5 SINE Alu -8 303 1 182 195 24 0 chr1 124617276 124617317 -157576347 - L2 LINE L2 -1 3312 3271 226 290 38 53 chr1 124617377 124617508 -157576156 + L2 LINE L2 3184 3312 -1 180 263 53 53 chr1 124619716 124619792 -157573872 + L2 LINE L2 3181 3256 -16 1239 205 134 78 chr1 124620093 124620823 -157572841 + L2 LINE L2 2511 3311 -2 245 284 60 0 chr1 124621529 124621596 -157572068 + L2 LINE L2 3242 3312 -1 586 300 36 18 chr1 124624232 124624452 -157569212 + MIR SINE MIR 20 243 -19 315 0 0 0 chr1 124624849 124624884 -157568780 + (TG)n Simple_repeat Simple_repeat 1 35 0 634 262 97 15 chr1 124629640 124629846 -157563818 - MIR SINE MIR 0 262 40 391 343 52 14 chr1 124629842 124630055 -157563609 - MIR SINE MIR -14 248 28 * 311 326 29 7 chr1 124630831 124630969 -157562695 - MIR SINE MIR -10 252 112 349 301 70 26 chr1 124631156 124631312 -157562352 + MIR3 SINE MIR 40 202 -6 34 0 0 0 chr1 124634164 124634198 -157559466 + GC_rich Low_complexity Low_complexity 1 34 0 390 134 0 0 chr1 124634369 124634436 -157559228 + (CCG)n Simple_repeat Simple_repeat 3 69 0 23 68 0 0 chr1 124634518 124634562 -157559102 + GC_rich Low_complexity Low_complexity 1 44 0 246 116 0 0 chr1 124634834 124634877 -157558787 + (TG)n Simple_repeat Simple_repeat 1 43 0 219 303 8 25 chr1 124634992 124635114 -157558550 + G-rich Low_complexity Low_complexity 4 123 0 1092 255 16 4 chr1 124637681 124637936 -157555728 + MIR SINE MIR 5 262 0 1984 163 34 3 chr1 124638897 124639247 -157554417 + MSTB LTR MaLR 1 361 -65 303 325 26 0 chr1 124640022 124640136 -157553528 + L2 LINE L2 2118 2234 -1080 350 316 85 102 chr1 124640273 124640745 -157552919 + L2 LINE L2 2807 3270 -2 661 216 112 29 chr1 124641298 124641539 -157552125 + MIR SINE MIR 1 261 -1 585 258 39 0 chr1 124642509 124642691 -157550973 - L1MC5 LINE L1 -48 7913 7725 234 0 0 0 chr1 124642922 124642948 -157550716 + (T)n Simple_repeat Simple_repeat 1 26 0 333 250 229 64 chr1 124643021 124643137 -157550527 - MIR SINE MIR -42 220 124 1150 258 170 10 chr1 124643137 124643453 -157550211 + MLT1J2 LTR MaLR 1 392 -58 180 0 0 0 chr1 124643453 124643473 -157550191 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1150 258 170 10 chr1 124643473 124643544 -157550120 + MLT1J2 LTR MaLR 392 450 0 333 250 229 64 chr1 124643544 124643615 -157550049 - MIR SINE MIR -138 124 2 955 180 35 35 chr1 124643714 124643914 -157549750 - MER3 DNA MER1_type -9 200 1 330 360 62 27 chr1 124644311 124644662 -157549002 + L2 LINE L2 2669 3037 -235 327 238 151 63 chr1 124645939 124646065 -157547599 - L2 LINE L2 0 3272 3136 292 180 300 20 chr1 124646157 124646257 -157547407 - MIR SINE MIR -77 185 58 731 316 76 29 chr1 124646281 124646843 -157546821 - L2 LINE L2 -177 3095 2475 408 319 93 50 chr1 124647346 124647710 -157545954 + L2 LINE L2 2887 3266 -6 828 243 83 18 chr1 124648393 124648611 -157545053 - MIR SINE MIR -23 239 8 211 283 0 0 chr1 124649265 124649311 -157544353 - L2 LINE L2 -2 3270 3225 347 384 55 12 chr1 124649894 124650149 -157543515 - L2 LINE L2 -953 2361 2096 578 224 17 0 chr1 124650274 124650390 -157543274 - MER5A DNA MER1_type -1 188 71 1176 66 11 22 chr1 124650395 124650576 -157543088 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 690 226 37 26 chr1 124650579 124650769 -157542895 - AluJb SINE Alu 0 312 121 271 214 18 18 chr1 124650769 124650825 -157542839 - MER5A DNA MER1_type -129 60 5 828 256 35 0 chr1 124652716 124652919 -157540745 + MIR SINE MIR 52 261 -1 195 204 0 0 chr1 124652920 124652969 -157540695 + (TTA)n Simple_repeat Simple_repeat 1 49 0 745 56 9 9 chr1 124653844 124653952 -157539712 + (TTTC)n Simple_repeat Simple_repeat 2 109 0 845 278 87 21 chr1 124653984 124654409 -157539255 - L1MC4a LINE L1 -1793 6015 5563 189 429 0 0 chr1 124654411 124654523 -157539141 - MIR SINE MIR -57 151 40 2479 72 7 0 chr1 124654571 124654876 -157538788 + AluY SINE Alu 1 307 -4 218 342 59 55 chr1 124654947 124655149 -157538515 - L2 LINE L2 -55 3217 3015 305 283 48 55 chr1 124655350 124655495 -157538169 + MIR3 SINE MIR 60 203 -5 236 342 54 12 chr1 124655695 124655856 -157537808 - MIR SINE MIR -46 216 42 272 248 57 38 chr1 124657581 124657686 -157535978 - MLT1H LTR MaLR -8 541 435 467 196 239 0 chr1 124657779 124657942 -157535722 - MLT1H LTR MaLR -324 225 24 250 341 0 0 chr1 124659490 124659581 -157534083 + L3b LINE CR1 1311 1401 -182 1206 153 15 0 chr1 124660043 124660239 -157533425 - LTR26 LTR ERV1 0 603 405 2534 227 155 29 chr1 124660375 124661478 -157532186 + L2 LINE L2 2065 3313 0 232 318 157 70 chr1 124661566 124661852 -157531812 + L2 LINE L2 2925 3235 -37 510 312 77 12 chr1 124662207 124662377 -157531287 - MIR3 SINE MIR -12 196 16 381 149 0 0 chr1 124662737 124662804 -157530860 + (TC)n Simple_repeat Simple_repeat 2 68 0 939 261 79 76 chr1 124663116 124663494 -157530170 + L2 LINE L2 2549 2925 -388 1919 174 30 19 chr1 124663494 124663855 -157529809 + MLT1A1 LTR MaLR 1 365 0 939 261 79 76 chr1 124663855 124664205 -157529459 + L2 LINE L2 2925 3307 -6 355 253 0 0 chr1 124664227 124664306 -157529358 - MIR SINE MIR 0 262 184 765 214 148 16 chr1 124665031 124665274 -157528390 + MER33 DNA MER1_type 28 302 -22 573 214 21 28 chr1 124665803 124665948 -157527716 - L1ME2 LINE L1 -9 6155 6012 351 44 0 0 chr1 124666373 124666418 -157527246 + (TG)n Simple_repeat Simple_repeat 1 45 0 678 296 88 45 chr1 124666491 124666795 -157526869 + L2 LINE L2 2804 3130 -183 2179 120 30 0 chr1 124666795 124667094 -157526570 + AluSg SINE Alu 1 308 -2 678 296 88 45 chr1 124667094 124667188 -157526476 + L2 LINE L2 3130 3219 -94 233 325 65 0 chr1 124668023 124668100 -157525564 - MER91C DNA MER1_type -30 110 29 1618 172 28 17 chr1 124670005 124670296 -157523368 + AluJo SINE Alu 1 294 -18 592 244 116 18 chr1 124670448 124670612 -157523052 - MIR SINE MIR -50 212 33 626 280 29 7 chr1 124672251 124672436 -157521228 + MIR SINE MIR 4 191 -62 337 279 57 25 chr1 124672437 124672595 -157521069 - L1ME3A LINE L1 0 6170 6008 2301 176 114 15 chr1 124672723 124673195 -157520469 - MLT2B1 LTR ERVL 0 520 2 215 329 29 0 chr1 124673395 124673465 -157520199 - L3 LINE CR1 -4 1573 1502 294 326 50 21 chr1 124673961 124674102 -157519562 + L3 LINE CR1 1330 1474 -103 242 315 171 14 chr1 124674432 124674578 -157519086 + MIR SINE MIR 75 243 -19 243 204 0 0 chr1 124675433 124675487 -157518177 + (CA)n Simple_repeat Simple_repeat 2 55 0 182 133 0 0 chr1 124675689 124675719 -157517945 - L2 LINE L2 -216 3056 3027 416 274 52 37 chr1 124676311 124676446 -157517218 - L2 LINE L2 0 3272 3136 208 274 53 21 chr1 124677335 124677430 -157516234 + L2 LINE L2 1169 1266 -2048 510 313 94 21 chr1 124678232 124678465 -157515199 + MIR SINE MIR 2 251 -11 223 250 0 19 chr1 124678776 124678828 -157514836 + L2 LINE L2 3213 3263 -9 253 293 93 21 chr1 124679294 124679434 -157514230 - MIR SINE MIR -2 260 111 708 132 132 0 chr1 124679849 124679955 -157513709 - FAM SINE Alu -60 125 6 312 70 0 0 chr1 124680096 124680139 -157513525 + (TC)n Simple_repeat Simple_repeat 2 44 0 22 56 0 0 chr1 124681079 124681115 -157512549 + AT_rich Low_complexity Low_complexity 1 36 0 606 283 49 25 chr1 124681500 124681683 -157511981 + MIR SINE MIR 3 195 -67 1916 151 18 30 chr1 124681683 124682020 -157511644 - MER1B DNA MER1_type -4 333 1 606 283 49 25 chr1 124682020 124682080 -157511584 + MIR SINE MIR 195 252 -10 2011 124 30 0 chr1 124682611 124682910 -157510754 + AluSg SINE Alu 1 308 -2 287 300 44 4 chr1 124683092 124683215 -157510449 + MLT1I LTR MaLR 63 171 -238 360 252 16 8 chr1 124683235 124683362 -157510302 - AluSp/q SINE Alu 0 303 176 326 312 25 4 chr1 124683466 124683593 -157510071 + MLT1I LTR MaLR 63 224 -238 2800 6 0 0 chr1 124683596 124683907 -157509757 - AluYa5 SINE Alu 0 311 1 292 154 103 132 chr1 124684029 124684114 -157509550 + MLT1I LTR MaLR 278 359 -50 2307 92 0 0 chr1 124684114 124684419 -157509245 - AluY SINE Alu -6 305 1 292 154 103 132 chr1 124684419 124684469 -157509195 + MLT1I LTR MaLR 359 409 0 268 191 0 0 chr1 124684472 124684519 -157509145 + L2 LINE L2 3225 3271 -1 216 0 0 0 chr1 124684903 124684927 -157508737 + (T)n Simple_repeat Simple_repeat 1 24 0 587 300 102 17 chr1 124687976 124688212 -157505452 + MIR SINE MIR 13 262 0 231 325 65 0 chr1 124689873 124689950 -157503714 - MER91C DNA MER1_type -30 110 29 1476 172 28 17 chr1 124691856 124692147 -157501517 + AluJo SINE Alu 1 294 -18 588 244 116 18 chr1 124692299 124692463 -157501201 - MIR SINE MIR -50 212 33 626 280 29 7 chr1 124694102 124694287 -157499377 + MIR SINE MIR 4 191 -62 367 279 57 25 chr1 124694288 124694446 -157499218 - L1ME3A LINE L1 0 6170 6008 2262 176 114 15 chr1 124694574 124695046 -157498618 - MLT2B1 LTR ERVL 0 520 2 211 329 29 0 chr1 124695246 124695316 -157498348 - L3 LINE CR1 -4 1573 1502 279 326 50 21 chr1 124695812 124695953 -157497711 + L3 LINE CR1 1330 1474 -103 242 315 171 14 chr1 124696283 124696429 -157497235 + MIR SINE MIR 75 243 -19 204 97 0 0 chr1 124697310 124697341 -157496323 + (CA)n Simple_repeat Simple_repeat 1 31 0 410 274 52 37 chr1 124698165 124698300 -157495364 - L2 LINE L2 0 3272 3136 201 274 53 21 chr1 124699189 124699284 -157494380 + L2 LINE L2 1169 1266 -2048 527 319 91 21 chr1 124700086 124700327 -157493337 + MIR SINE MIR 2 259 -3 201 303 145 66 chr1 124701156 124701384 -157492280 + L2 LINE L2 2808 3053 -219 241 301 84 56 chr1 124701428 124701571 -157492093 + L2 LINE L2 2909 3055 -217 355 293 38 0 chr1 124701852 124701958 -157491706 - LTR16A LTR ERVL -214 236 127 220 306 28 14 chr1 124704712 124704784 -157488880 + MIR3 SINE MIR 3 75 -133 646 234 109 10 chr1 124705188 124705416 -157488248 + L1ME3 LINE L1 5907 6170 0 830 243 122 22 chr1 124706383 124706605 -157487059 + MIR SINE MIR 16 259 -3 1043 234 94 10 chr1 124707463 124707770 -157485894 + L2 LINE L2 2227 2559 -755 503 149 0 0 chr1 124707839 124707913 -157485751 - MER63 DNA MER1_type -93 743 44 1493 249 92 31 chr1 124707945 124708692 -157484972 + L2 LINE L2 2539 3311 -2 300 314 26 0 chr1 124709077 124709233 -157484431 + (TA)n Simple_repeat Simple_repeat 2 161 0 2063 203 32 78 chr1 124709233 124709769 -157483895 + MLT2B1 LTR ERVL 9 519 -1 2087 190 63 5 chr1 124710309 124710704 -157482960 - MSTB LTR MaLR 0 426 9 23 0 0 0 chr1 124710795 124710818 -157482846 + AT_rich Low_complexity Low_complexity 1 23 0 262 287 11 11 chr1 124711555 124711642 -157482022 - L2 LINE L2 0 3272 3186 803 257 219 18 chr1 124711683 124712351 -157481313 - L2 LINE L2 -257 3056 2247 323 250 28 111 chr1 124712404 124712448 -157481216 - L2 LINE L2 -2 3270 3224 397 190 0 13 chr1 124712448 124712527 -157481137 - MER116 DNA Mariner -2 78 1 323 250 28 111 chr1 124712527 124712626 -157481038 - L2 LINE L2 -48 3224 3139 520 214 61 0 chr1 124712647 124712778 -157480886 - MIR SINE MIR 0 262 124 686 268 41 43 chr1 124712801 124713261 -157480403 + MLT1H1 LTR MaLR 10 555 0 376 222 14 0 chr1 124713269 124713341 -157480323 - MIR SINE MIR -187 75 3 1574 239 98 38 chr1 124713584 124714053 -157479611 - MLT1E LTR MaLR 0 593 97 974 145 81 0 chr1 124714199 124714371 -157479293 + L1PA16 LINE L1 5971 6156 -10 262 296 9 37 chr1 124714389 124714497 -157479167 + MIR SINE MIR 41 145 -117 4414 237 126 26 chr1 124714820 124716258 -157477406 + L1MC4 LINE L1 6459 8040 -2 254 273 23 34 chr1 124717017 124717105 -157476559 - L3 LINE CR1 -3 1574 1488 259 293 130 0 chr1 124717194 124717317 -157476347 - L3 LINE CR1 -18 1559 1421 321 300 35 44 chr1 124717889 124718038 -157475626 + MIR SINE MIR 1 153 -55 1201 108 124 0 chr1 124719280 124719474 -157474190 + MER20 DNA MER1_type 1 218 -1 690 269 114 53 chr1 124719611 124719971 -157473693 + Charlie8 DNA MER1_type 33 414 -2003 1102 223 18 0 chr1 124720242 124720462 -157473202 + MER58A DNA MER1_type 1 224 0 439 270 149 14 chr1 124720578 124720726 -157472938 - MIR SINE MIR -10 252 85 222 250 0 19 chr1 124721568 124721620 -157472044 + L2 LINE L2 3213 3263 -9 249 293 93 21 chr1 124722086 124722226 -157471438 - MIR SINE MIR -2 260 111 719 118 136 0 chr1 124722641 124722751 -157470913 - FAM SINE Alu -60 125 1 402 57 0 0 chr1 124722888 124722941 -157470723 + (TC)n Simple_repeat Simple_repeat 2 54 0 22 56 0 0 chr1 124723885 124723921 -157469743 + AT_rich Low_complexity Low_complexity 1 36 0 651 287 45 20 chr1 124724306 124724489 -157469175 + MIR SINE MIR 3 195 -67 1874 151 18 30 chr1 124724489 124724826 -157468838 - MER1B DNA MER1_type -4 333 1 651 287 45 20 chr1 124724826 124724886 -157468778 + MIR SINE MIR 195 252 -10 282 277 0 75 chr1 124726157 124726251 -157467413 + L2 LINE L2 3186 3272 0 910 263 74 57 chr1 124728078 124728497 -157465167 - LTR16B LTR ERVL -38 426 1 432 288 163 6 chr1 124729192 124729352 -157464312 - MIR SINE MIR -55 207 23 351 328 152 12 chr1 124729582 124729753 -157463911 + L2 LINE L2 3077 3271 -1 182 346 37 0 chr1 124730529 124730610 -157463054 - L2 LINE L2 -382 2931 2848 979 307 111 35 chr1 124730879 124731508 -157462156 + L2 LINE L2 2238 2914 -400 326 292 93 63 chr1 124731714 124732080 -157461584 + L1MEd LINE L1 12 388 -5731 2192 158 37 5 chr1 124732108 124732512 -157461152 + L1MC3 LINE L1 7361 7777 -8 938 292 113 44 chr1 124732564 124733242 -157460422 + L1MEd LINE L1 425 1165 -4954 2502 91 0 0 chr1 124733242 124733549 -157460115 + AluSc SINE Alu 1 307 -2 938 292 113 44 chr1 124733549 124733623 -157460041 + L1MEd LINE L1 1165 1232 -4887 481 264 70 50 chr1 124733729 124733930 -157459734 + L1ME3A LINE L1 5929 6133 -37 385 311 68 16 chr1 124733952 124734142 -157459522 + L1MEd LINE L1 1377 1576 -4734 313 298 75 25 chr1 124734246 124734910 -157458754 + L1MEd LINE L1 1763 2424 -3705 * 512 223 40 15 chr1 124734892 124735094 -157458570 + L1MEd LINE L1 2877 3083 -3046 324 0 0 0 chr1 124735126 124735162 -157458502 + (CA)n Simple_repeat Simple_repeat 1 36 0 255 179 0 0 chr1 124736586 124736642 -157457022 - L1MB5 LINE L1 -1 6173 6118 863 213 0 7 chr1 124736647 124737060 -157456604 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 186 258 0 0 chr1 124737078 124737140 -157456524 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 425 333 47 7 chr1 124737169 124737319 -157456345 + MIR3 SINE MIR 12 167 -41 199 253 270 28 chr1 124738487 124738665 -157454999 + MIR SINE MIR 31 251 -11 424 247 32 0 chr1 124739380 124739473 -157454191 + MIR3 SINE MIR 82 177 -31 585 222 85 179 chr1 124739633 124740057 -157453607 - L2 LINE L2 0 3313 2930 560 264 74 12 chr1 124740209 124740372 -157453292 + MIR SINE MIR 29 201 -61 309 367 25 0 chr1 124741370 124741490 -157452174 + MIR3 SINE MIR 44 166 -42 346 292 29 72 chr1 124741524 124741733 -157451931 + MIR SINE MIR 49 248 -14 518 257 64 23 chr1 124742041 124742212 -157451452 - MIR SINE MIR -70 192 15 469 300 35 6 chr1 124742541 124742711 -157450953 - MIR SINE MIR -14 248 74 1920 80 0 34 chr1 124742776 124743040 -157450624 - AluY SINE Alu -21 290 36 600 318 55 20 chr1 124743081 124743427 -157450237 + MLT1J LTR MaLR 154 511 0 1493 172 3 48 chr1 124743438 124743752 -157449912 + MER73 LTR ERVL 1 300 -344 227 209 0 0 chr1 124743752 124743795 -157449869 + GA-rich Low_complexity Low_complexity 2 44 0 1768 185 13 42 chr1 124743797 124744176 -157449488 + MER73 LTR ERVL 277 644 0 199 306 69 0 chr1 124744240 124744312 -157449352 - L2 LINE L2 -1885 1429 1353 260 229 33 0 chr1 124744936 124744997 -157448667 + L2 LINE L2 3251 3313 0 286 203 301 0 chr1 124745113 124745256 -157448408 + L1ME4a LINE L1 5648 5833 -288 2183 116 0 0 chr1 124745740 124746123 -157447541 - AluSp SINE Alu 0 383 1 412 227 135 7 chr1 124746849 124746990 -157446674 + L1ME4a LINE L1 5962 6120 -1 729 324 90 53 chr1 124748718 124749574 -157444090 + L2 LINE L2 1487 2374 -940 305 313 42 84 chr1 124749592 124749854 -157443810 + L2 LINE L2 2721 2971 -343 2310 80 0 10 chr1 124750055 124750357 -157443307 - AluY SINE Alu -12 299 1 2762 169 76 12 chr1 124751093 124751674 -157441990 - MER39 LTR ERV1 0 707 90 735 231 75 11 chr1 124753334 124753520 -157440144 + MIR SINE MIR 41 238 -24 27 29 0 0 chr1 124753531 124753565 -157440099 + AT_rich Low_complexity Low_complexity 1 34 0 573 36 36 0 chr1 124754800 124754884 -157438780 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 235 274 0 0 chr1 124754999 124755050 -157438614 + L2 LINE L2 3210 3260 -12 603 312 83 0 chr1 124755103 124755308 -157438356 + MIR SINE MIR 27 248 -14 314 274 74 26 chr1 124756463 124756590 -157437074 + MIR SINE MIR 25 156 -64 1911 180 122 61 chr1 124756590 124757197 -157436467 - LTR48B LTR ERV1 0 644 1 302 324 105 19 chr1 124757215 124757320 -157436344 - L2 LINE L2 -10 3262 3149 259 370 35 17 chr1 124758215 124758504 -157435160 + HERV16 LTR ERVL 311 604 -4392 574 225 118 30 chr1 124759084 124759253 -157434411 + MER63A DNA MER1_type 25 208 -2 2911 325 39 27 chr1 124759315 124760775 -157432889 + HERV16 LTR ERVL 1752 3229 -2535 1557 267 27 35 chr1 124760815 124761365 -157432299 + HERV16 LTR ERVL 3318 3863 -1901 662 332 72 11 chr1 124761624 124762282 -157431382 + HERV16 LTR ERVL 4072 4802 -852 1769 203 65 61 chr1 124764311 124764785 -157428879 + MLT2B1 LTR ERVL 1 476 -44 339 206 15 7 chr1 124764826 124764962 -157428702 + (TA)n Simple_repeat Simple_repeat 2 138 0 386 120 16 71 chr1 124765016 124765199 -157428465 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 342 195 23 39 chr1 124765201 124765329 -157428335 + (TATAA)n Simple_repeat Simple_repeat 4 129 0 253 159 37 9 chr1 124765366 124765473 -157428191 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 359 122 79 6 chr1 124765485 124765649 -157428015 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 37 0 0 0 chr1 124765661 124765698 -157427966 + AT_rich Low_complexity Low_complexity 1 37 0 303 144 48 20 chr1 124765712 124765858 -157427806 + (TTATA)n Simple_repeat Simple_repeat 5 154 0 204 108 81 27 chr1 124765875 124765986 -157427678 + (TA)n Simple_repeat Simple_repeat 1 117 0 398 94 71 24 chr1 124766027 124766197 -157427467 + (TA)n Simple_repeat Simple_repeat 2 179 0 6028 122 40 2 chr1 124766203 124767193 -157426471 - Tigger1 DNA MER2_type 0 2418 1391 3545 199 80 19 chr1 124767216 124768015 -157425649 - MER21B LTR ERV1 -15 848 1 1747 103 4 0 chr1 124768016 124768268 -157425396 - Tigger1 DNA MER2_type -1021 1397 1145 6276 193 49 12 chr1 124768277 124769258 -157424406 - L1M1 LINE L1 -4123 1205 1079 1116 56 0 0 chr1 124769258 124769402 -157424262 - L1PA4 LINE L1 -2 6153 6010 6276 193 49 12 chr1 124769402 124770523 -157423141 - L1M1 LINE L1 -4249 1079 1 6903 148 11 0 chr1 124770525 124771676 -157421988 - Tigger1 DNA MER2_type -1254 1164 1 327 130 0 0 chr1 124771682 124771736 -157421928 + MLT2B1 LTR ERVL 467 520 0 452 265 95 8 chr1 124772135 124772305 -157421359 - MIR SINE MIR -59 149 14 216 0 0 0 chr1 124772502 124772526 -157421138 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1711 227 43 36 chr1 124772634 124773162 -157420502 + MER51C LTR ERV1 1 640 0 625 248 58 35 chr1 124774250 124774461 -157419203 - MIR SINE MIR -14 248 34 343 309 195 0 chr1 124774680 124774829 -157418835 + MIR SINE MIR 73 250 -12 2275 126 7 60 chr1 124774999 124775395 -157418269 - MLT2D LTR ERVL 0 414 42 2406 145 31 19 chr1 124775395 124775816 -157417848 - MSTB LTR MaLR 0 426 1 2275 126 7 60 chr1 124775816 124775855 -157417809 - MLT2D LTR ERVL -372 42 2 383 248 37 9 chr1 124776331 124776440 -157417224 + L3 LINE CR1 734 845 -732 530 215 32 32 chr1 124776726 124776884 -157416780 + MLT1J2 LTR MaLR 1 158 -292 611 253 41 0 chr1 124777294 124777440 -157416224 - L2 LINE L2 0 3313 3162 731 223 91 0 chr1 124778119 124778294 -157415370 + L2 LINE L2 3123 3313 0 420 299 94 12 chr1 124779695 124779939 -157413725 + L1M4 LINE L1 2140 2403 -3743 574 313 69 28 chr1 124780231 124780595 -157413069 + LTR16B LTR ERVL 60 438 -26 288 311 33 0 chr1 124780604 124780694 -157412970 + HERV16 LTR ERVL 1 93 -4903 318 344 74 27 chr1 124780746 124780877 -157412787 + L1M4 LINE L1 2692 2815 -3331 423 0 0 0 chr1 124780877 124780924 -157412740 + (CA)n Simple_repeat Simple_repeat 2 48 0 318 344 74 27 chr1 124780924 124781048 -157412616 + L1M4 LINE L1 2815 2959 -3187 9315 167 8 13 chr1 124781048 124783758 -157409906 + L1PA14 LINE L1 3488 6160 -1 685 311 107 38 chr1 124783777 124784932 -157408732 + L1M4 LINE L1 2932 4169 -1977 2051 123 0 0 chr1 124784941 124785254 -157408410 - AluSx SINE Alu 0 313 1 584 201 74 0 chr1 124785267 124785416 -157408248 - MIR SINE MIR -14 248 89 2815 110 47 14 chr1 124786968 124787009 -157406655 - MLT2A1 LTR ERVL -1 443 405 195 114 0 0 chr1 124787009 124787044 -157406620 + (TA)n Simple_repeat Simple_repeat 1 35 0 2815 110 47 14 chr1 124787044 124787431 -157406233 - MLT2A1 LTR ERVL -39 405 1 45763 68 6 2 chr1 124787431 124793061 -157400603 - HERVL-A1-A1 LTR ERVL 0 5654 1 255 170 0 0 chr1 124793362 124793409 -157400255 + (TA)n Simple_repeat Simple_repeat 2 48 0 3033 84 19 17 chr1 124793409 124793827 -157399837 - MLT2A1 LTR ERVL -25 419 1 2357 95 0 3 chr1 124794353 124794648 -157399016 + AluY SINE Alu 1 294 -17 210 281 214 0 chr1 124796340 124796429 -157397235 + MIR SINE MIR 22 129 -79 234 91 0 0 chr1 124796500 124796533 -157397131 + (TC)n Simple_repeat Simple_repeat 1 33 0 660 295 98 7 chr1 124797330 124797615 -157396049 + L3 LINE CR1 580 890 -687 231 200 0 0 chr1 124797620 124797665 -157395999 - L2 LINE L2 0 3313 3269 3261 63 16 5 chr1 124797870 124798297 -157395367 - L1PA8 LINE L1 -3 6169 5738 237 365 0 0 chr1 124798308 124798412 -157395252 - MIR SINE MIR -111 151 48 939 320 15 3 chr1 124798584 124798918 -157394746 + L3 LINE CR1 928 1265 -312 213 324 224 6 chr1 124799053 124799232 -157394432 - MIR SINE MIR -36 226 9 385 317 30 30 chr1 124799930 124800097 -157393567 + MIR SINE MIR 22 188 -74 477 280 42 55 chr1 124801173 124801409 -157392255 + LTR16C LTR ERVL 209 441 -50 23 33 0 0 chr1 124801886 124801916 -157391748 + AT_rich Low_complexity Low_complexity 1 30 0 1076 256 205 23 chr1 124802113 124802645 -157391019 + L3 LINE CR1 946 1574 -3 208 133 0 50 chr1 124803673 124803733 -157389931 + (CTTAA)n Simple_repeat Simple_repeat 2 58 0 207 69 0 0 chr1 124804625 124804654 -157389010 + (TATAA)n Simple_repeat Simple_repeat 4 32 0 321 273 45 0 chr1 124805485 124805573 -157388091 + MIR SINE MIR 22 113 -149 365 276 6 39 chr1 124805736 124805917 -157387747 + (TCTCTG)n Simple_repeat Simple_repeat 4 178 0 505 269 38 6 chr1 124806762 124806922 -157386742 - MIR SINE MIR -77 185 21 949 213 19 32 chr1 124806933 124807149 -157386515 + MER20 DNA MER1_type 1 213 -6 390 252 47 0 chr1 124807189 124807296 -157386368 - MER5A DNA MER1_type -1 188 77 1055 134 6 0 chr1 124808168 124808215 -157385449 + (TTCC)n Simple_repeat Simple_repeat 1 227 0 1055 134 6 0 chr1 124808215 124808394 -157385270 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 229 174 22 0 chr1 124808826 124808872 -157384792 + L2 LINE L2 3265 3311 -2 1876 140 50 39 chr1 124809531 124809889 -157383775 + THE1C LTR MaLR 14 375 0 9625 138 11 34 chr1 124809891 124811506 -157382158 + MSTA-int LTR MaLR 3 1580 0 1917 126 171 27 chr1 124811506 124811880 -157381784 + MSTA LTR MaLR 1 428 0 603 286 70 109 chr1 124812061 124812849 -157380815 - L2 LINE L2 -417 2897 2141 1395 7 0 0 chr1 124813435 124813584 -157380080 + AluYa5 SINE Alu 152 300 -11 233 252 176 50 chr1 124815101 124815220 -157378444 + MIR SINE MIR 42 175 -87 224 352 46 0 chr1 124815507 124815615 -157378049 - L2 LINE L2 -4 3309 3197 1040 109 11 6 chr1 124815858 124816032 -157377632 - L1MA3 LINE L1 -100 6205 6031 * 43038 37 24 1 chr1 124816013 124822024 -157371640 - L1PA2 LINE L1 -5 6150 2 340 281 76 88 chr1 124822674 124822912 -157370752 + HAL1 LINE L1 16 250 -2257 493 260 47 30 chr1 124823552 124823721 -157369943 + HAL1 LINE L1 294 465 -2042 1701 156 0 4 chr1 124823733 124823990 -157369674 - AluJo SINE Alu -18 294 39 286 236 0 42 chr1 124824051 124824123 -157369541 + HAL1 LINE L1 480 548 -1959 * 2085 254 103 50 chr1 124824121 124824824 -157368840 + HAL1 LINE L1 868 1532 -975 2199 124 0 3 chr1 124824824 124825123 -157368541 + AluSx SINE Alu 1 298 -14 2085 254 103 50 chr1 124825123 124825893 -157367771 + HAL1 LINE L1 1532 2502 -5 579 242 112 28 chr1 124827132 124827300 -157366364 - MIR SINE MIR -6 256 65 2093 112 7 10 chr1 124827300 124827594 -157366070 + AluSg SINE Alu 1 293 -17 579 242 112 28 chr1 124827594 124827640 -157366024 - MIR SINE MIR -197 65 24 478 289 26 0 chr1 124827732 124827884 -157365780 + MIR SINE MIR 93 248 -14 243 311 48 47 chr1 124829719 124829847 -157363817 + MIR SINE MIR 4 132 -76 210 333 132 42 chr1 124830610 124830799 -157362865 + MIR SINE MIR 3 208 -54 272 388 40 22 chr1 124831219 124831530 -157362134 + L2 LINE L2 2769 3083 -189 932 155 0 6 chr1 124831975 124832156 -157361508 + GA-rich Low_complexity Low_complexity 1 180 0 469 243 45 57 chr1 124832994 124833171 -157360493 - MER5B DNA MER1_type 0 178 4 824 269 5 0 chr1 124833183 124833369 -157360295 - MER5A DNA MER1_type 0 189 3 208 154 26 0 chr1 124833543 124833582 -157360082 + CT-rich Low_complexity Low_complexity 4 43 0 231 254 28 56 chr1 124834113 124834129 -157359535 + L2 LINE L2 3240 3255 -58 207 162 0 0 chr1 124834129 124834166 -157359498 + MIR SINE MIR 213 249 -13 231 254 28 56 chr1 124834166 124834184 -157359480 + L2 LINE L2 3255 3308 -5 376 161 35 81 chr1 124834275 124834362 -157359302 - MER5A DNA MER1_type -28 161 79 1512 117 17 22 chr1 124834387 124834617 -157359047 + AluSq SINE Alu 73 301 -12 363 44 0 0 chr1 124834847 124834892 -157358772 + (TC)n Simple_repeat Simple_repeat 2 46 0 426 214 200 21 chr1 124837075 124837220 -157356444 + MIR SINE MIR 65 235 -27 752 243 119 19 chr1 124837250 124837460 -157356204 - MIR SINE MIR -19 243 13 1049 213 27 18 chr1 124837575 124837655 -157356009 - MER58A DNA MER1_type -2197 223 145 1546 149 81 45 chr1 124837655 124837990 -157355674 + MER7A DNA MER2_type 1 345 -1 1049 213 27 18 chr1 124837990 124838130 -157355534 - MER58A DNA MER1_type -2275 145 1 340 316 29 37 chr1 124839680 124839816 -157353848 + L2 LINE L2 2918 3052 -261 195 152 0 0 chr1 124839843 124839876 -157353788 + L2 LINE L2 3281 3313 0 * 253 311 107 25 chr1 124839874 124839996 -157353668 - MIR SINE MIR -112 150 19 242 336 64 32 chr1 124840016 124840141 -157353523 + L2 LINE L2 3107 3235 -37 602 258 129 46 chr1 124840911 124841151 -157352513 + MIR SINE MIR 3 262 0 1024 322 129 6 chr1 124841766 124842483 -157351181 + L2 LINE L2 2453 3272 0 358 291 180 36 chr1 124842697 124842975 -157350689 - L2 LINE L2 0 3313 2996 272 267 12 137 chr1 124843733 124843894 -157349770 + MIR3 SINE MIR 20 160 -48 1088 209 55 78 chr1 124844118 124844501 -157349163 + MLT1B LTR MaLR 1 374 -16 428 325 85 59 chr1 124844942 124845330 -157348334 + L2 LINE L2 2916 3313 0 512 303 169 52 chr1 124845494 124846183 -157347481 - L2 LINE L2 -7 3306 2529 589 221 48 35 chr1 124846229 124846374 -157347290 + L2 LINE L2 3162 3308 -5 367 279 16 25 chr1 124846442 124846564 -157347100 - L2 LINE L2 -886 2428 2308 1696 248 8 11 chr1 124846685 124847157 -157346507 + Charlie4a DNA MER1_type 37 507 -1 224 297 54 97 chr1 124847556 124847741 -157345923 + MIR3 SINE MIR 23 199 -9 234 272 12 0 chr1 124848772 124848853 -157344811 - LTR67 LTR ERVL -17 540 459 185 225 25 0 chr1 124849088 124849128 -157344536 + L2 LINE L2 3269 3309 -4 21 36 0 0 chr1 124849671 124849699 -157343965 + AT_rich Low_complexity Low_complexity 1 28 0 213 292 120 84 chr1 124850525 124850799 -157342865 + L2 LINE L2 2988 3271 -1 481 329 101 0 chr1 124850933 124851161 -157342503 + L3 LINE CR1 1199 1449 -128 1923 158 23 18 chr1 124851342 124851684 -157341980 + MER2 DNA MER2_type 1 344 0 2473 24 41 0 chr1 124851865 124852155 -157341509 - AluY SINE Alu -9 302 1 302 317 158 0 chr1 124852279 124852399 -157341265 + MIR3 SINE MIR 39 177 -31 1089 296 64 17 chr1 124852667 124853076 -157340588 + LTR16A LTR ERVL 17 444 -6 2291 265 18 41 chr1 124853125 124854126 -157339538 + L1MEc LINE L1 1341 2318 -4078 4233 214 46 105 chr1 124854173 124854880 -157338784 + L1MEc LINE L1 1659 2407 -3808 987 144 77 0 chr1 124854880 124855074 -157338590 + L1MB2 LINE L1 5960 6168 -3 4233 214 46 105 chr1 124855074 124856738 -157336926 + L1MEc LINE L1 2407 3875 -2340 408 171 37 0 chr1 124856738 124856820 -157336844 + U13 snRNA snRNA 20 104 0 4233 214 46 105 chr1 124856820 124857194 -157336470 + L1MEc LINE L1 3875 4270 -1945 3287 135 21 67 chr1 124857526 124858155 -157335509 + MER7C DNA MER2_type 3 602 0 1579 188 48 41 chr1 124858155 124858570 -157335094 - LTR52 LTR ERVL -3 418 1 500 300 62 41 chr1 124859076 124859319 -157334345 + MIR SINE MIR 8 255 -7 309 302 105 17 chr1 124859398 124859570 -157334094 - L3 LINE CR1 -42 1535 1349 282 21 42 21 chr1 124859757 124859805 -157333859 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 693 169 115 14 chr1 124859809 124859957 -157333707 - AluJo SINE Alu -30 282 120 971 218 19 37 chr1 124859979 124860270 -157333394 - L1PB4 LINE L1 -4 6152 5869 19145 33 0 0 chr1 124860354 124863446 -157330218 - L1PA3 LINE L1 0 6155 3065 349 339 69 58 chr1 124863606 124863883 -157329781 - L2 LINE L2 -1 3271 2992 252 210 0 0 chr1 124864582 124864644 -157329020 - L1MB4 LINE L1 -33 6147 6086 4104 146 28 36 chr1 124864647 124865075 -157328589 - L1MA4 LINE L1 -279 6021 5591 623 184 7 29 chr1 124865075 124865211 -157328453 - AluJo SINE Alu -169 133 1 4104 146 28 36 chr1 124865211 124865819 -157327845 - L1MA4 LINE L1 -709 5591 4991 39837 40 23 2 chr1 124865824 124871851 -157321813 - L1PA2 LINE L1 0 6155 1 4508 145 10 47 chr1 124871850 124872808 -157320856 - L1MA4 LINE L1 -1141 5005 4083 * 475 148 0 0 chr1 124873941 124874022 -157319642 - LTR33A LTR ERVL -2 521 441 225 0 0 0 chr1 124874024 124874049 -157319615 + (T)n Simple_repeat Simple_repeat 1 25 0 272 218 61 88 chr1 124874394 124874541 -157319123 - LTR50 LTR ERVL -652 143 1 692 205 47 93 chr1 124874619 124875145 -157318519 - L1MC5 LINE L1 -50 7911 7308 369 299 109 14 chr1 124875150 124875444 -157318220 - L1MEc LINE L1 -3292 2923 2602 38324 70 7 6 chr1 124875495 124881614 -157312050 - L1PA5 LINE L1 -29 6125 3 381 312 22 14 chr1 124881773 124881911 -157311753 - L1MEc LINE L1 -3630 2585 2447 2364 123 22 12 chr1 124881979 124882379 -157311285 - L1MA3 LINE L1 -5 6300 5897 717 264 40 38 chr1 124882510 124882739 -157310925 - L1MDa LINE L1 -2144 4396 4164 4868 185 65 3 chr1 124882739 124883757 -157309907 - Tigger6a DNA MER2_type 0 1083 3 717 264 40 38 chr1 124883757 124883948 -157309716 - L1MDa LINE L1 -2376 4164 3975 339 268 84 0 chr1 124884103 124884229 -157309435 - L1MDa LINE L1 -3621 2919 2741 21 57 0 0 chr1 124884229 124884264 -157309400 + AT_rich Low_complexity Low_complexity 1 35 0 339 268 84 0 chr1 124884264 124884282 -157309382 - L1MDa LINE L1 -3799 2741 2726 625 164 0 25 chr1 124884290 124884412 -157309252 - L1MA10 LINE L1 0 6334 6216 2088 126 17 0 chr1 124884434 124884727 -157308937 - AluSq SINE Alu -15 298 1 4077 245 43 9 chr1 124884727 124885838 -157307826 - L1MEc LINE L1 -5213 1183 35 589 58 23 0 chr1 124885886 124885972 -157307692 + (TTTC)n Simple_repeat Simple_repeat 1 88 0 2275 116 3 0 chr1 124885978 124886279 -157307385 - AluSp SINE Alu -11 302 1 481 301 65 48 chr1 124886307 124886616 -157307048 - L1MDa LINE L1 -3920 2620 2307 354 208 0 0 chr1 124886635 124886701 -157306963 - AluS SINE Alu -249 59 1 311 292 78 82 chr1 124886701 124886982 -157306682 - L1MDa LINE L1 -5751 779 500 549 186 101 0 chr1 124886984 124887113 -157306551 + FLAM_C SINE Alu 2 143 0 45313 38 1 1 chr1 124887128 124893287 -157300377 + L1PA2 LINE L1 1 6155 0 4437 146 28 36 chr1 124893292 124893900 -157299764 + L1MA4 LINE L1 4991 5591 -709 619 184 7 29 chr1 124893900 124894036 -157299628 + FLAM_C SINE Alu 1 133 0 4437 146 28 36 chr1 124894036 124894464 -157299200 + L1MA4 LINE L1 5591 6021 -279 249 277 32 32 chr1 124894855 124894949 -157298715 + LTR67 LTR ERVL 425 518 -39 1035 256 79 73 chr1 124895102 124895747 -157297917 + L1ME3A LINE L1 5410 6058 -112 21 57 0 0 chr1 124895799 124895834 -157297830 + AT_rich Low_complexity Low_complexity 1 35 0 279 253 35 0 chr1 124895981 124896068 -157297596 + MER103 DNA DNA 75 164 -2 325 255 20 20 chr1 124897153 124897251 -157296413 - LTR67 LTR ERVL -35 522 425 328 248 71 9 chr1 124898111 124898224 -157295440 + L1ME4a LINE L1 6002 6121 0 267 203 0 0 chr1 124899278 124899342 -157294322 + A-rich Low_complexity Low_complexity 1 64 0 228 158 18 70 chr1 124899354 124899411 -157294253 + MER113 DNA MER1_type? 360 413 -108 804 213 37 0 chr1 124899470 124899634 -157294030 - MER97c DNA MER1_type? -913 177 8 433 252 130 0 chr1 124899753 124899884 -157293780 - MIR3 SINE MIR -26 182 35 263 296 95 48 chr1 124900898 124901087 -157292577 + L2 LINE L2 2967 3164 -108 424 263 160 0 chr1 124901110 124901266 -157292398 + MIR SINE MIR 82 262 0 225 352 0 0 chr1 124901307 124901378 -157292286 + L2 LINE L2 3243 3313 0 229 342 51 79 chr1 124901388 124901780 -157291884 + L2 LINE L2 2869 3249 -23 258 288 152 0 chr1 124902013 124902197 -157291467 - L1ME4a LINE L1 -117 6004 5793 2432 90 0 7 chr1 124902347 124902657 -157291007 - AluSq SINE Alu -5 308 1 363 266 81 14 chr1 124902735 124902869 -157290795 + MER5B DNA MER1_type 2 133 -45 1825 146 28 3 chr1 124903105 124903393 -157290271 - AluJb SINE Alu -17 295 1 1846 238 18 10 chr1 124903441 124903942 -157289722 + L2 LINE L2 2267 2771 -543 1482 262 87 21 chr1 124903944 124904417 -157289247 + MLT2B1 LTR ERVL 17 520 0 569 258 85 84 chr1 124904422 124904845 -157288819 + L2 LINE L2 2776 3198 -115 246 271 129 84 chr1 124905074 124905229 -157288435 + LTR16C LTR ERVL 71 232 -259 706 272 107 12 chr1 124905236 124905479 -157288185 + LTR16C LTR ERVL 197 462 -29 727 239 139 4 chr1 124906177 124906407 -157287257 - MIR SINE MIR 0 262 2 445 271 45 26 chr1 124906411 124906566 -157287098 - MIR3 SINE MIR -12 196 39 1219 271 96 43 chr1 124907212 124907824 -157285840 - L2 LINE L2 0 3313 2638 2268 69 0 0 chr1 124907824 124908132 -157285532 + AluY SINE Alu 6 313 0 1219 271 96 43 chr1 124908132 124908417 -157285247 - L2 LINE L2 -675 2638 2370 291 254 14 0 chr1 124908870 124908941 -157284723 + L2 LINE L2 3241 3312 -1 666 278 113 46 chr1 124909658 124910090 -157283574 + LTR33 LTR ERVL 34 494 -27 191 200 40 40 chr1 124910182 124910232 -157283432 - L2 LINE L2 0 3272 3223 876 198 11 103 chr1 124910890 124911163 -157282501 + MIR SINE MIR 15 262 0 402 301 41 0 chr1 124911557 124911680 -157281984 + MIR SINE MIR 10 137 -125 855 262 80 0 chr1 124912671 124912896 -157280768 + MIR SINE MIR 18 260 -2 214 262 16 0 chr1 124913527 124913588 -157280076 + MIR SINE MIR 18 79 -129 183 156 0 0 chr1 124913588 124913620 -157280044 + (TAG)n Simple_repeat Simple_repeat 1 32 0 771 260 24 40 chr1 124913630 124913866 -157279798 - MIR SINE MIR -25 237 7 512 272 52 6 chr1 124914817 124914990 -157278674 - MIR3 SINE MIR -15 193 13 227 130 0 22 chr1 124915341 124915387 -157278277 + (CCCCCA)n Simple_repeat Simple_repeat 1 45 0 411 296 97 11 chr1 124915979 124916155 -157277509 - MIR SINE MIR -2 260 70 472 237 0 0 chr1 124916563 124916677 -157276987 + L1MC4 LINE L1 7923 8036 -6 2307 84 0 0 chr1 124918324 124918611 -157275053 + AluY SINE Alu 17 303 -8 287 211 203 8 chr1 124919443 124919571 -157274093 - MIR SINE MIR -26 236 84 22 0 0 0 chr1 124920551 124920573 -157273091 + AT_rich Low_complexity Low_complexity 1 22 0 2938 172 99 7 chr1 124920978 124921168 -157272496 + L1MCa LINE L1 1737 1908 -4518 1802 158 0 0 chr1 124921168 124921441 -157272223 - AluSx SINE Alu -3 309 37 2938 172 99 7 chr1 124921441 124921940 -157271724 + L1MCa LINE L1 1908 2488 -3938 1075 116 5 58 chr1 124921938 124922127 -157271537 - L1 LINE L1 -1779 4367 4189 * 271 263 25 0 chr1 124922136 124922216 -157271448 + L1 LINE L1 4416 4497 -1649 328 323 110 0 chr1 124923498 124923662 -157270002 + MIR SINE MIR 55 236 -26 423 52 0 0 chr1 124923871 124923929 -157269735 + (TG)n Simple_repeat Simple_repeat 2 59 0 1032 180 24 15 chr1 124923930 124924136 -157269528 - MER31A LTR ERV1 -2 483 276 384 68 51 0 chr1 124974502 124974561 -157219103 - Alu SINE Alu -5 297 236 225 355 28 0 chr1 124974684 124974791 -157218873 + MLT1J2 LTR MaLR 341 450 0 349 150 0 33 chr1 124975505 124975565 -157218099 - AluS SINE Alu -239 64 7 316 186 86 0 chr1 124975709 124975779 -157217885 - L2 LINE L2 -6 3266 3191 2489 93 3 0 chr1 124976309 124976651 -157217013 + AluSx SINE Alu 1 343 0 263 263 113 0 chr1 124977342 124977422 -157216242 + MIR SINE MIR 65 153 -109 23 33 0 0 chr1 124977733 124977763 -157215901 + AT_rich Low_complexity Low_complexity 1 30 0 203 333 81 24 chr1 124980875 124980998 -157212666 + L2 LINE L2 3134 3263 -9 1093 128 0 39 chr1 124981188 124981368 -157212296 + FRAM SINE Alu 1 173 -3 2226 130 0 3 chr1 124981559 124981867 -157211797 + AluSg SINE Alu 1 307 -3 2262 108 0 0 chr1 124982311 124982607 -157211057 + AluSq SINE Alu 1 296 -17 368 306 22 96 chr1 124982725 124982903 -157210761 + MIR SINE MIR 12 165 -97 2126 135 0 13 chr1 124982903 124983038 -157210626 + AluSx SINE Alu 1 136 -176 2370 86 10 0 chr1 124983038 124983340 -157210324 + AluSp SINE Alu 2 306 -7 2126 135 0 13 chr1 124983340 124983515 -157210149 + AluSx SINE Alu 136 307 -5 368 306 22 96 chr1 124983515 124983607 -157210057 + MIR SINE MIR 165 262 0 182 94 62 0 chr1 124984393 124984425 -157209239 - L3 LINE CR1 -250 1327 1294 2294 105 3 0 chr1 124984661 124984956 -157208708 + AluSp SINE Alu 1 296 -17 278 278 90 62 chr1 124985899 124986043 -157207621 - L2 LINE L2 -3 3269 3122 485 266 124 11 chr1 124986541 124986718 -157206946 - MIR SINE MIR -65 197 1 2068 88 3 50 chr1 124987298 124987617 -157206047 + AluSp SINE Alu 1 304 -9 277 333 0 9 chr1 124989265 124989370 -157204294 + GA-rich Low_complexity Low_complexity 1 104 0 252 143 0 0 chr1 124989720 124989762 -157203902 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 488 351 66 0 chr1 124989810 124989961 -157203703 + MIR SINE MIR 38 198 -64 237 205 48 12 chr1 124990041 124990124 -157203540 + (TAGA)n Simple_repeat Simple_repeat 4 89 0 1165 271 68 7 chr1 124990896 124991416 -157202248 - MER115 DNA AcHobo -75 618 15 387 148 16 0 chr1 124992201 124992262 -157201402 + MER5A DNA MER1_type 128 189 0 335 261 34 23 chr1 124992454 124992542 -157201122 + MIR SINE MIR 156 244 -18 1684 149 27 30 chr1 124992798 124993127 -157200537 - AluJb SINE Alu 0 312 1 6243 135 60 6 chr1 124993134 124994226 -157199438 - L1MC1 LINE L1 0 6333 5186 313 308 0 0 chr1 124995004 124995082 -157198582 - MER96 DNA MER1_type? -3 172 95 265 250 0 0 chr1 124996492 124996548 -157197116 - L2 LINE L2 -13 3300 3245 997 192 91 0 chr1 124996599 124996797 -157196867 - MIR SINE MIR -44 218 3 229 191 24 0 chr1 124996809 124996851 -157196813 - L2 LINE L2 -81 3191 3149 1209 200 5 5 chr1 124996851 124997066 -157196598 + MER58A DNA MER1_type 10 224 0 205 232 29 0 chr1 124997805 124997874 -157195790 + (TA)n Simple_repeat Simple_repeat 2 72 0 199 279 51 38 chr1 124998820 124998899 -157194765 + MER5A DNA MER1_type 72 151 -38 201 288 25 12 chr1 124999502 124999582 -157194082 + CT-rich Low_complexity Low_complexity 4 84 0 809 257 96 5 chr1 124999793 125000011 -157193653 + MIR SINE MIR 11 248 -14 1734 159 10 24 chr1 125000680 125000811 -157192853 + AluJo SINE Alu 6 137 -175 1481 185 63 0 chr1 125000811 125001097 -157192567 + AluJb SINE Alu 1 304 -8 1734 159 10 24 chr1 125001097 125001260 -157192404 + AluJo SINE Alu 137 296 -16 1147 244 61 36 chr1 125001336 125001696 -157191968 - MLT1J2 LTR MaLR -7 443 75 189 337 137 32 chr1 125001776 125001871 -157191793 - MIR SINE MIR -67 141 37 188 275 0 0 chr1 125002161 125002201 -157191463 - L2 LINE L2 -96 3176 3137 475 130 10 30 chr1 125002305 125002405 -157191259 - L1M LINE L1 -909 5391 5294 * 8152 125 12 33 chr1 125002383 125002437 -157191227 - L1 LINE L1 -1185 4961 4907 1495 171 39 32 chr1 125002437 125002747 -157190917 - AluJb SINE Alu 0 312 1 8152 125 12 33 chr1 125002747 125003892 -157189772 - L1 LINE L1 -1239 4907 3794 2071 67 3 20 chr1 125003892 125004190 -157189474 - AluY SINE Alu -18 293 1 8152 125 12 33 chr1 125004190 125004412 -157189252 - L1 LINE L1 -2352 3794 3569 370 182 68 23 chr1 125004414 125004502 -157189162 + L1ME1 LINE L1 6020 6111 -55 245 143 71 57 chr1 125004549 125004619 -157189045 + L1MB8 LINE L1 6111 6183 -1 21 0 0 0 chr1 125004627 125004648 -157189016 + AT_rich Low_complexity Low_complexity 1 21 0 638 311 109 7 chr1 125004652 125004945 -157188719 + L2 LINE L2 2034 2356 -958 216 0 0 0 chr1 125005140 125005164 -157188500 + (A)n Simple_repeat Simple_repeat 1 24 0 1176 146 0 0 chr1 125005172 125005350 -157188314 + FRAM SINE Alu 1 173 -3 1877 133 0 57 chr1 125005398 125005729 -157187935 - AluSx SINE Alu 0 312 1 261 160 0 20 chr1 125005762 125005812 -157187852 + L2 LINE L2 3264 3312 -1 497 222 26 0 chr1 125006851 125006968 -157186696 - MER94 DNA DNA -1 133 14 660 275 131 9 chr1 125006982 125007204 -157186460 - MIR SINE MIR -13 249 1 735 316 85 50 chr1 125007228 125008061 -157185603 - L2 LINE L2 -1 3271 2420 281 250 39 19 chr1 125008064 125008168 -157185496 - L2 LINE L2 -1059 2255 2150 1555 143 45 70 chr1 125008176 125008316 -157185348 + AluJo SINE Alu 1 143 -169 2091 112 3 20 chr1 125008316 125008621 -157185043 + AluSp SINE Alu 1 300 -13 1555 143 45 70 chr1 125008621 125008794 -157184870 + AluJo SINE Alu 143 306 -6 2226 91 6 28 chr1 125008881 125009201 -157184463 + AluSp SINE Alu 1 313 0 557 382 73 18 chr1 125009558 125009835 -157183829 - L1MB1 LINE L1 -18 6171 5874 323 71 0 0 chr1 125009835 125009877 -157183787 - MER31B LTR ERV1 -424 42 1 436 331 126 16 chr1 125009877 125010249 -157183415 - L2 LINE L2 -427 2887 2475 487 281 25 0 chr1 125010268 125010389 -157183275 - MIR SINE MIR -67 195 72 2522 188 12 0 chr1 125010793 125011214 -157182450 + MSTB LTR MaLR 1 426 0 261 206 235 0 chr1 125011215 125011283 -157182381 + L2 LINE L2 3185 3268 -4 2084 94 16 19 chr1 125011374 125011683 -157181981 + AluSg SINE Alu 1 308 -2 248 270 16 0 chr1 125011917 125011980 -157181684 + MER52A LTR ERV1 1 64 -1691 22 56 0 0 chr1 125012455 125012491 -157181173 + AT_rich Low_complexity Low_complexity 1 36 0 551 270 143 24 chr1 125012491 125012743 -157180921 - L2 LINE L2 -79 3234 2953 585 147 6 21 chr1 125012750 125012905 -157180759 - MER53 DNA DNA -1 188 2 652 273 112 0 chr1 125012912 125013117 -157180547 - L2 LINE L2 -357 2957 2730 281 336 123 20 chr1 125014071 125014217 -157179447 + L3 LINE CR1 556 716 -861 400 240 39 10 chr1 125014251 125014355 -157179309 + MIR SINE MIR 81 187 -75 200 286 0 0 chr1 125014408 125014457 -157179207 + MIR SINE MIR 110 158 -104 359 325 146 19 chr1 125014523 125014735 -157178929 + L3 LINE CR1 766 1004 -573 * 728 259 72 5 chr1 125014726 125014919 -157178745 - MIR SINE MIR 0 262 57 25 0 0 0 chr1 125015403 125015428 -157178236 + AT_rich Low_complexity Low_complexity 1 25 0 442 228 237 36 chr1 125015549 125015773 -157177891 + L1ME4a LINE L1 5835 6103 -18 741 267 36 45 chr1 125016457 125016628 -157177036 - MIR SINE MIR 0 262 92 1773 240 112 22 chr1 125016628 125017174 -157176490 - MLT1G1 LTR MaLR 0 595 1 741 267 36 45 chr1 125017174 125017249 -157176415 - MIR SINE MIR -170 92 18 588 266 123 28 chr1 125017314 125017566 -157176098 + L3 LINE CR1 1089 1364 -213 347 300 32 16 chr1 125018622 125018780 -157174884 + MIR SINE MIR 16 176 -63 366 290 76 25 chr1 125018846 125019007 -157174657 + L1MC/D LINE L1 5482 5649 -558 2005 81 23 52 chr1 125019150 125019457 -157174207 + AluSg SINE Alu 1 298 -12 817 209 6 0 chr1 125019469 125019627 -157174037 + AluSq SINE Alu 2 160 -153 216 130 0 0 chr1 125019683 125019729 -157173935 + (G)n Simple_repeat Simple_repeat 1 46 0 24 53 0 0 chr1 125019795 125019833 -157173831 + GC_rich Low_complexity Low_complexity 1 38 0 214 239 15 45 chr1 125020725 125020792 -157172872 + GA-rich Low_complexity Low_complexity 1 65 0 47 33 0 0 chr1 125020958 125021019 -157172645 + AT_rich Low_complexity Low_complexity 1 61 0 793 183 0 0 chr1 125021168 125021294 -157172370 - FLAM_A SINE Alu -7 126 1 366 185 54 115 chr1 125021797 125021927 -157171737 + MIR SINE MIR 77 198 -64 373 250 48 10 chr1 125021989 125022093 -157171571 + MIR SINE MIR 82 189 -73 2100 74 19 45 chr1 125022217 125022528 -157171136 + AluSx SINE Alu 1 303 -9 198 198 58 93 chr1 125023270 125023356 -157170308 - MIR SINE MIR -57 205 123 1861 118 14 4 chr1 125023458 125023775 -157169889 + AluSx SINE Alu 1 320 0 580 317 101 13 chr1 125023902 125024129 -157169535 + MIR SINE MIR 5 251 -11 1686 189 70 51 chr1 125024267 125024606 -157169058 + MLT1C LTR MaLR 7 357 -110 2355 78 0 3 chr1 125024606 125024914 -157168750 - AluSq SINE Alu -6 307 1 1686 189 70 51 chr1 125024914 125024986 -157168678 + MLT1C LTR MaLR 357 426 -41 209 400 40 13 chr1 125025000 125025075 -157168589 - MIR3 SINE MIR -129 79 3 185 156 62 0 chr1 125025163 125025195 -157168469 + L2 LINE L2 3265 3298 -15 548 218 197 0 chr1 125025880 125026027 -157167637 + MIR SINE MIR 84 259 -3 742 268 38 16 chr1 125028068 125028311 -157165353 - MIR SINE MIR -4 258 14 496 324 17 11 chr1 125028678 125028854 -157164810 - MIR SINE MIR -51 211 35 203 296 0 0 chr1 125029385 125029456 -157164208 + GA-rich Low_complexity Low_complexity 2 72 0 196 231 19 39 chr1 125029632 125029684 -157163980 - L3 LINE CR1 -3 1574 1524 470 48 16 0 chr1 125032111 125032173 -157161491 + AluY SINE Alu 2 64 -246 2587 249 120 11 chr1 125032276 125033086 -157160578 - L1MEc LINE L1 -5476 920 23 2370 117 34 26 chr1 125033088 125033222 -157160442 - L1PB4 LINE L1 -1 6155 6024 1984 142 57 35 chr1 125033222 125033589 -157160075 + THE1C LTR MaLR 1 375 0 2370 117 34 26 chr1 125033589 125033839 -157159825 - L1PB4 LINE L1 -132 6024 5768 295 182 49 70 chr1 125033839 125033973 -157159691 - L1M4 LINE L1 -1748 4398 4266 1631 175 3 22 chr1 125033987 125034302 -157159362 - AluJb SINE Alu 0 312 4 27 0 0 0 chr1 125034311 125034338 -157159326 + AT_rich Low_complexity Low_complexity 1 27 0 1918 142 10 0 chr1 125034338 125034627 -157159037 - AluJb SINE Alu -19 293 2 441 54 0 0 chr1 125034633 125034689 -157158975 + (TA)n Simple_repeat Simple_repeat 2 57 0 216 0 0 0 chr1 125034689 125034713 -157158951 + (T)n Simple_repeat Simple_repeat 1 24 0 866 224 42 25 chr1 125034713 125034954 -157158710 - L1M4 LINE L1 -1886 4260 4016 1085 185 34 0 chr1 125034956 125035161 -157158503 - AluJo SINE Alu -13 299 88 592 142 170 0 chr1 125035191 125035297 -157158367 - AluJb SINE Alu -188 124 1 374 314 128 77 chr1 125035465 125035854 -157157810 - L2 LINE L2 -2087 1227 859 550 186 0 0 chr1 125035854 125035956 -157157708 - U13 snRNA snRNA -2 102 1 374 314 128 77 chr1 125035956 125036528 -157157136 - L2 LINE L2 -2455 859 221 218 214 274 36 chr1 125036563 125036647 -157157017 + L2 LINE L2 3169 3272 0 346 280 123 55 chr1 125037761 125037997 -157155667 - MIR SINE MIR 0 262 11 213 292 0 46 chr1 125038050 125038115 -157155549 - MER5A DNA MER1_type -14 175 114 * 244 214 18 18 chr1 125038062 125038118 -157155546 + MER5A DNA MER1_type 35 90 -99 2516 53 0 0 chr1 125038395 125038695 -157154969 - AluY SINE Alu -11 300 1 1629 97 0 9 chr1 125038732 125038948 -157154716 - AluSq SINE Alu -99 214 1 180 179 0 0 chr1 125038978 125039017 -157154647 + CT-rich Low_complexity Low_complexity 2 40 0 2661 204 55 77 chr1 125039020 125040381 -157153283 - L1ME1 LINE L1 -5 6161 4831 4730 153 24 2 chr1 125041519 125042370 -157151294 - L1MB7 LINE L1 -16 6168 5300 663 172 8 0 chr1 125042372 125042494 -157151170 - FLAM_A SINE Alu -2 140 18 1236 125 177 14 chr1 125042635 125042934 -157150730 - Tigger2 DNA MER2_type -92 2626 1 1462 196 87 0 chr1 125042936 125043258 -157150406 + MLT1F LTR MaLR 193 542 0 308 276 57 0 chr1 125043664 125043769 -157149895 - HAL1b LINE L1 -1 1347 1237 21 0 0 0 chr1 125043820 125043841 -157149823 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr1 125043959 125043992 -157149672 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 279 0 0 0 chr1 125044045 125044076 -157149588 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1176 202 72 54 chr1 125044078 125044355 -157149309 - AluJo SINE Alu -30 282 1 1006 293 81 32 chr1 125044720 125045419 -157148245 + L1MEd LINE L1 569 1347 -4963 4009 48 6 0 chr1 125045419 125045914 -157147750 + L1PA7 LINE L1 5655 6152 -2 1006 293 81 32 chr1 125045914 125046144 -157147520 + L1MEd LINE L1 1347 1564 -4746 32 67 0 0 chr1 125046300 125046360 -157147304 + AT_rich Low_complexity Low_complexity 1 60 0 2289 100 3 3 chr1 125046544 125046844 -157146820 + AluSc SINE Alu 1 300 -9 209 179 0 0 chr1 125047212 125047251 -157146413 + (CA)n Simple_repeat Simple_repeat 2 40 0 2472 65 0 0 chr1 125047363 125047655 -157146009 + AluSg SINE Alu 1 292 -18 373 202 36 12 chr1 125047687 125047771 -157145893 + MIR3 SINE MIR 101 186 -22 867 178 8 147 chr1 125047869 125048127 -157145537 + MIR SINE MIR 31 252 -10 2234 122 43 5 chr1 125048741 125049110 -157144554 - MLT1B LTR MaLR 0 390 8 2071 136 0 7 chr1 125049300 125049602 -157144062 - AluJb SINE Alu -1 311 12 614 158 108 0 chr1 125049690 125049810 -157143854 - FLAM_C SINE Alu 0 133 1 2299 114 0 3 chr1 125050312 125050618 -157143046 + AluSx SINE Alu 1 305 -7 219 69 0 0 chr1 125051075 125051104 -157142560 + (CCCTG)n Simple_repeat Simple_repeat 2 30 0 2232 105 7 0 chr1 125051581 125051876 -157141788 + AluSp SINE Alu 1 297 -16 32 67 0 0 chr1 125051916 125051976 -157141688 + AT_rich Low_complexity Low_complexity 1 60 0 1355 73 0 0 chr1 125053154 125053318 -157140346 - AluY SINE Alu -15 296 133 2195 121 0 22 chr1 125054077 125054392 -157139272 - AluSx SINE Alu -4 308 1 547 241 123 12 chr1 125054882 125055052 -157138612 - MIR SINE MIR -28 234 46 213 139 0 0 chr1 125055109 125055152 -157138512 + (TTTTTA)n Simple_repeat Simple_repeat 1 43 0 2404 94 0 16 chr1 125055234 125055552 -157138112 + AluSq SINE Alu 1 313 0 2140 116 7 0 chr1 125055552 125055844 -157137820 + AluSx SINE Alu 1 294 -18 1983 152 3 10 chr1 125056375 125056677 -157136987 + AluJb SINE Alu 1 300 -12 2224 99 3 7 chr1 125057020 125057323 -157136341 - AluSc SINE Alu -7 302 1 2221 90 17 3 chr1 125057969 125058259 -157135405 - AluSc SINE Alu -14 295 2 509 182 45 0 chr1 125058681 125058769 -157134895 + L2 LINE L2 3180 3271 -1 463 162 14 0 chr1 125060943 125061017 -157132647 + tRNA-His-CAC tRNA tRNA 1 75 0 2115 116 10 7 chr1 125061615 125061909 -157131755 - AluSg SINE Alu -15 295 1 1785 163 14 14 chr1 125061939 125062228 -157131436 - AluJb SINE Alu -18 294 6 336 259 284 15 chr1 125062345 125062546 -157131118 + MIR SINE MIR 8 262 0 373 129 6 28 chr1 125062606 125062718 -157130946 + AluJ/FLAM SINE Alu 1 59 -243 240 158 0 158 chr1 125062725 125062768 -157130896 + FLAM_A SINE Alu 70 98 -204 2352 74 33 7 chr1 125062768 125063067 -157130597 - AluSg SINE Alu -2 308 2 240 158 0 158 chr1 125063067 125063099 -157130565 + FLAM_A SINE Alu 98 133 -169 2782 204 33 61 chr1 125063439 125064245 -157129419 - L1ME1 LINE L1 -5 6161 5370 1831 178 6 13 chr1 125064245 125064559 -157129105 - AluJb SINE Alu 0 312 1 2782 204 33 61 chr1 125064559 125064750 -157128914 - L1ME1 LINE L1 -796 5370 5175 1132 119 25 5 chr1 125064773 125064975 -157128689 + L1MA8 LINE L1 6086 6291 0 3905 189 52 86 chr1 125065112 125065189 -157128475 - L1ME1 LINE L1 -940 5206 5128 2182 120 3 0 chr1 125065189 125065490 -157128174 - AluSx SINE Alu -10 302 1 3905 189 52 86 chr1 125065490 125066292 -157127372 - L1ME1 LINE L1 -1018 5128 4300 1848 128 7 43 chr1 125066292 125066596 -157127068 - AluJb SINE Alu -19 293 1 3905 189 52 86 chr1 125066596 125066656 -157127008 - L1ME1 LINE L1 -1846 4300 4239 2252 106 0 13 chr1 125066656 125066958 -157126706 + AluSx SINE Alu 1 298 -14 3905 189 52 86 chr1 125066958 125067058 -157126606 - L1ME1 LINE L1 -1907 4239 4137 1583 204 4 0 chr1 125067058 125067332 -157126332 + AluJb SINE Alu 10 284 -28 3905 189 52 86 chr1 125067332 125067424 -157126240 - L1ME1 LINE L1 -2009 4137 4043 438 36 0 0 chr1 125067424 125067480 -157126184 + (TG)n Simple_repeat Simple_repeat 2 57 0 3905 189 52 86 chr1 125067480 125067699 -157125965 - L1ME1 LINE L1 -2103 4043 3899 21 0 0 0 chr1 125067852 125067873 -157125791 + AT_rich Low_complexity Low_complexity 1 21 0 893 145 0 0 chr1 125067878 125068009 -157125655 + FLAM_C SINE Alu 2 132 -1 2100 137 10 0 chr1 125068073 125068373 -157125291 - AluSq SINE Alu -10 303 1 2301 91 0 3 chr1 125069082 125069378 -157124286 + AluY SINE Alu 2 296 -15 282 223 0 53 chr1 125069394 125069488 -157124176 + L1ME LINE L1 5762 5850 -271 234 62 0 0 chr1 125069557 125069589 -157124075 + (CA)n Simple_repeat Simple_repeat 1 32 0 381 267 58 8 chr1 125070216 125070336 -157123328 + MER112 DNA MER1_type 134 259 -1 472 260 80 106 chr1 125070734 125070827 -157122837 + L1MC4a LINE L1 5499 5593 -2215 958 194 0 24 chr1 125070827 125070997 -157122667 + FAM SINE Alu 1 166 -9 472 260 80 106 chr1 125070997 125071253 -157122411 + L1MC4a LINE L1 5593 5839 -1969 581 27 13 0 chr1 125071622 125071697 -157121967 + (TTTTC)n Simple_repeat Simple_repeat 2 77 0 1918 117 0 40 chr1 125071700 125071999 -157121665 - AluJb SINE Alu -25 287 1 2002 89 0 98 chr1 125072008 125072344 -157121320 - AluSc SINE Alu -6 303 1 379 255 118 34 chr1 125073032 125073236 -157120428 + L1MC4a LINE L1 5679 5899 -1909 524 147 11 11 chr1 125073320 125073415 -157120249 + AluJo SINE Alu 42 136 -176 2390 68 41 0 chr1 125073526 125073820 -157119844 - AluY SINE Alu -5 306 1 225 274 231 51 chr1 125074041 125074530 -157119134 + L2 LINE L2 1529 2105 -1209 213 178 0 0 chr1 125074706 125074751 -157118913 + (TG)n Simple_repeat Simple_repeat 2 46 0 2072 124 7 0 chr1 125074771 125075061 -157118603 + AluSx SINE Alu 1 292 -20 648 104 0 21 chr1 125075365 125075461 -157118203 - FLAM_C SINE Alu -13 130 37 267 332 237 22 chr1 125075600 125076272 -157117392 + L2 LINE L2 2161 2976 -338 2341 118 0 0 chr1 125076320 125076626 -157117038 + AluSx SINE Alu 1 306 -6 312 226 122 73 chr1 125076728 125076892 -157116772 + L2 LINE L2 3129 3300 -13 222 37 0 0 chr1 125077555 125077582 -157116082 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 673 176 40 0 chr1 125077977 125078102 -157115562 - FLAM_A SINE Alu -3 130 1 5546 105 4 33 chr1 125078117 125078973 -157114691 - L1PA13 LINE L1 0 6163 5292 2302 110 0 0 chr1 125078973 125079282 -157114382 - AluY SINE Alu -2 309 1 5546 105 4 33 chr1 125079282 125079602 -157114062 - L1PA13 LINE L1 -871 5292 4964 2715 143 23 48 chr1 125079602 125080162 -157113502 - L1PA13 LINE L1 -1592 4554 4009 382 297 67 10 chr1 125081904 125082099 -157111565 + MER112 DNA MER1_type 2 207 -53 464 282 117 12 chr1 125082190 125082353 -157111311 + MIR SINE MIR 65 244 -18 2886 221 35 27 chr1 125082511 125083281 -157110383 - L1ME2 LINE L1 -12 6152 5377 823 153 14 0 chr1 125083429 125083573 -157110091 + L1MC1 LINE L1 6174 6319 -14 1793 115 12 0 chr1 125083575 125083838 -157109826 - AluSx SINE Alu 0 312 45 34 42 0 0 chr1 125083838 125083886 -157109778 + AT_rich Low_complexity Low_complexity 1 48 0 2309 91 10 0 chr1 125084151 125084449 -157109215 - AluSx SINE Alu -11 301 1 2171 118 0 0 chr1 125084686 125084973 -157108691 - AluSx SINE Alu -25 287 1 977 133 0 0 chr1 125084973 125085108 -157108556 - AluSq/x SINE Alu -178 135 1 26 50 0 0 chr1 125086099 125086139 -157107525 + AT_rich Low_complexity Low_complexity 1 40 0 1901 209 103 12 chr1 125086306 125086799 -157106865 + MLT1F LTR MaLR 5 542 0 1174 159 11 0 chr1 125087665 125087854 -157105810 + AluJb SINE Alu 120 310 -2 1704 189 10 0 chr1 125088008 125088310 -157105354 - AluJo SINE Alu -7 305 1 2521 62 3 3 chr1 125088453 125088758 -157104906 + AluY SINE Alu 1 305 -6 671 252 173 18 chr1 125090001 125090227 -157103437 + MIR SINE MIR 2 262 0 234 0 0 0 chr1 125091189 125091215 -157102449 + (TG)n Simple_repeat Simple_repeat 2 27 0 793 125 0 0 chr1 125092225 125092329 -157101335 - AluSg/x SINE Alu -10 299 196 446 286 0 0 chr1 125092407 125092505 -157101159 - MER94 DNA DNA -31 103 6 496 217 69 46 chr1 125092509 125092726 -157100938 - HAL1 LINE L1 -59 2448 2227 2174 121 13 0 chr1 125092950 125093256 -157100408 + AluSx SINE Alu 1 310 -2 368 269 214 33 chr1 125093265 125093540 -157100124 - HAL1 LINE L1 -2146 361 37 1047 150 23 35 chr1 125093614 125093787 -157099877 - FAM SINE Alu 0 175 5 2489 90 3 0 chr1 125093793 125094104 -157099560 - AluSp SINE Alu -1 312 1 1246 155 0 10 chr1 125094106 125094299 -157099365 - AluJb SINE Alu -17 295 105 1585 188 37 0 chr1 125094301 125094573 -157099091 + AluJb SINE Alu 1 282 -30 204 97 0 0 chr1 125094587 125094618 -157099046 + (GGGAGA)n Simple_repeat Simple_repeat 6 36 0 599 78 0 13 chr1 125094625 125094702 -157098962 - AluJ/FLAM SINE Alu -222 90 15 2036 133 0 7 chr1 125094930 125095224 -157098440 + AluJb SINE Alu 1 292 -20 542 228 73 7 chr1 125096120 125096256 -157097408 + MER103 DNA DNA 8 152 -14 785 216 106 30 chr1 125096349 125096585 -157097079 + MER112 DNA MER1_type 3 256 0 2165 104 10 0 chr1 125096684 125096973 -157096691 + AluSp SINE Alu 1 292 -21 874 153 0 15 chr1 125100150 125100281 -157093383 + FLAM_C SINE Alu 1 129 -4 852 295 79 0 chr1 125100381 125100635 -157093029 - Charlie8 DNA MER1_type -2142 275 2 285 29 0 0 chr1 125102348 125102382 -157091282 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr1 125102512 125102540 -157091124 + AT_rich Low_complexity Low_complexity 1 28 0 380 282 0 19 chr1 125102632 125102735 -157090929 - MER5A DNA MER1_type -1 188 88 426 275 140 18 chr1 125102864 125103035 -157090629 - MIR SINE MIR -20 242 51 235 246 16 16 chr1 125103092 125103153 -157090511 - MER5A DNA MER1_type -56 133 73 228 245 0 0 chr1 125103398 125103451 -157090213 - L2 LINE L2 -94 3219 3167 2432 58 0 3 chr1 125103523 125103816 -157089848 + AluY SINE Alu 1 292 -19 1499 260 23 44 chr1 125104592 125104782 -157088882 + LTR16A LTR ERVL 1 193 -257 2021 135 10 7 chr1 125104782 125105078 -157088586 + AluSx SINE Alu 1 297 -15 1499 260 23 44 chr1 125105078 125105322 -157088342 + LTR16A LTR ERVL 193 426 -24 372 303 61 56 chr1 125105365 125105596 -157088068 - MIR SINE MIR -11 251 20 215 366 104 0 chr1 125105791 125105974 -157087690 - MIR3 SINE MIR -4 204 3 198 0 0 0 chr1 125106906 125106928 -157086736 + (CA)n Simple_repeat Simple_repeat 2 23 0 240 279 0 59 chr1 125107118 125107186 -157086478 - L2 LINE L2 -1 3312 3249 337 276 138 7 chr1 125107448 125107593 -157086071 + MIR SINE MIR 82 245 -17 242 260 110 10 chr1 125108008 125108108 -157085556 + MIR SINE MIR 151 260 -2 246 196 22 0 chr1 125108117 125108163 -157085501 + L2 LINE L2 3251 3297 -16 490 318 122 50 chr1 125108352 125108730 -157084934 - L2 LINE L2 -27 3245 2841 1198 181 102 24 chr1 125108809 125109063 -157084601 + MER69 DNA AcHobo 1 274 -2252 6195 142 25 33 chr1 125109103 125110102 -157083562 - L1MA4A LINE L1 -4 6299 5294 189 0 0 0 chr1 125110102 125110123 -157083541 + (TTA)n Simple_repeat Simple_repeat 2 22 0 6195 142 25 33 chr1 125110123 125111078 -157082586 - L1MA4A LINE L1 -1004 5299 4378 2197 115 20 0 chr1 125111078 125111374 -157082290 - AluSx SINE Alu -10 302 1 2868 71 20 0 chr1 125111374 125111767 -157081897 - L1M1 LINE L1 -4344 3221 2821 1912 158 7 0 chr1 125111767 125112070 -157081594 + AluSx SINE Alu 1 305 -7 1937 271 121 9 chr1 125112338 125112992 -157080672 - L1M2b LINE L1 -6482 727 1 1441 254 43 8 chr1 125113030 125113404 -157080260 + MER69 DNA AcHobo 309 695 -1831 421 236 166 13 chr1 125113462 125113619 -157080045 + L1MEc LINE L1 34 214 -6182 1920 220 53 31 chr1 125113663 125114212 -157079452 + L1MEc LINE L1 312 872 -5524 1250 175 33 0 chr1 125114231 125114442 -157079222 + AluJb SINE Alu 91 308 -4 582 147 25 24 chr1 125114444 125114730 -157078934 + GA-rich Low_complexity Low_complexity 1 286 0 1180 269 79 6 chr1 125114741 125115235 -157078429 + L1MEc LINE L1 890 1419 -4977 2375 88 0 28 chr1 125115235 125115553 -157078111 + AluY SINE Alu 1 309 -2 1047 76 8 0 chr1 125115664 125115795 -157077869 - AluY SINE Alu -179 132 1 469 247 54 32 chr1 125115795 125116009 -157077655 + L1MEc LINE L1 1442 1561 -4654 3012 122 11 28 chr1 125116040 125116475 -157077189 + MSTA LTR MaLR 1 428 0 2111 214 82 40 chr1 125116584 125117304 -157076360 + L1MEc LINE L1 1633 2382 -4014 1635 219 28 5 chr1 125117307 125117704 -157075960 + L1MEc LINE L1 2718 3123 -3092 995 280 52 58 chr1 125117722 125118169 -157075495 + L1M4c LINE L1 4 447 -6721 237 265 24 36 chr1 125118376 125118459 -157075205 + L1M4c LINE L1 1621 1702 -5466 3295 234 22 50 chr1 125118550 125119299 -157074365 + L1M4c LINE L1 1751 2520 -4648 1956 176 0 0 chr1 125119299 125119611 -157074053 + AluJb SINE Alu 1 312 0 3295 234 22 50 chr1 125119611 125119986 -157073678 + L1M4c LINE L1 2520 2845 -4323 1773 183 0 7 chr1 125119986 125120281 -157073383 + AluJo SINE Alu 1 293 -19 2148 136 3 0 chr1 125120287 125120596 -157073068 + AluSq SINE Alu 1 310 -3 2275 103 0 0 chr1 125120639 125120929 -157072735 + AluSx SINE Alu 1 290 -22 228 226 137 32 chr1 125120993 125121050 -157072614 + L1M4c LINE L1 2858 2908 -4261 2285 94 3 7 chr1 125121050 125121359 -157072305 - AluY SINE Alu -3 308 1 228 226 137 32 chr1 125121359 125121425 -157072239 + L1M4c LINE L1 2908 2994 -4175 2099 132 3 23 chr1 125121425 125121735 -157071929 + AluSx SINE Alu 1 304 -8 8426 153 36 118 chr1 125121735 125122233 -157071431 + L1M2 LINE L1 3373 3910 -2404 2419 87 0 0 chr1 125122233 125122531 -157071133 + AluSp SINE Alu 1 298 -15 8426 153 36 118 chr1 125122531 125123075 -157070589 + L1M2 LINE L1 3910 4497 -1817 1465 197 3 43 chr1 125123075 125123211 -157070453 + AluJb SINE Alu 1 141 -171 2166 108 10 7 chr1 125123211 125123508 -157070156 + AluSq SINE Alu 1 298 -15 1465 197 3 43 chr1 125123508 125123671 -157069993 + AluJb SINE Alu 141 288 -24 8426 153 36 118 chr1 125123671 125123696 -157069968 + L1M2 LINE L1 4497 4522 -1792 1810 156 14 3 chr1 125123696 125123979 -157069685 - AluJo SINE Alu -26 286 1 8426 153 36 118 chr1 125123979 125124402 -157069262 + L1M2 LINE L1 4522 4978 -1336 818 105 8 40 chr1 125124402 125124526 -157069138 + FAM SINE Alu 24 143 -42 489 34 0 0 chr1 125124528 125124587 -157069077 + (CA)n Simple_repeat Simple_repeat 2 60 0 8426 153 36 118 chr1 125124587 125125326 -157068338 + L1M2 LINE L1 4979 5556 -758 783 215 0 0 chr1 125125326 125125447 -157068217 + FLAM_A SINE Alu 1 121 -12 77 22 0 0 chr1 125125447 125125538 -157068126 + AT_rich Low_complexity Low_complexity 1 91 0 339 300 0 0 chr1 125125557 125125647 -157068017 - L1MC4 LINE L1 -1339 6703 6614 1346 143 136 32 chr1 125125672 125125923 -157067741 - AluJb SINE Alu -35 277 1 35 0 0 0 chr1 125125926 125125961 -157067703 + AT_rich Low_complexity Low_complexity 1 35 0 809 120 192 0 chr1 125125977 125126102 -157067562 + FRAM SINE Alu 12 160 -16 3017 195 32 50 chr1 125126106 125126529 -157067135 + L1ME1 LINE L1 4328 4732 -1414 2181 119 0 0 chr1 125126529 125126823 -157066841 + AluSx SINE Alu 5 298 -14 3017 195 32 50 chr1 125126823 125127173 -157066491 + L1ME1 LINE L1 4732 5087 -1059 268 229 16 0 chr1 125127173 125127234 -157066430 + AluSg/x SINE Alu 113 174 -128 561 213 49 18 chr1 125127234 125127398 -157066266 - L1M4 LINE L1 -2229 3917 3749 491 86 86 0 chr1 125127403 125127473 -157066191 + FLAM_A SINE Alu 30 105 -37 234 0 0 0 chr1 125127479 125127505 -157066159 + (CA)n Simple_repeat Simple_repeat 2 27 0 1685 161 23 23 chr1 125127507 125127812 -157065852 + AluJo SINE Alu 1 305 -7 2573 213 83 13 chr1 125127813 125128676 -157064988 + L1ME1 LINE L1 5101 6014 -152 1556 112 86 19 chr1 125128699 125128966 -157064698 - MER47A DNA MER2_type 0 366 82 255 32 0 0 chr1 125128966 125128997 -157064667 + LTR24C LTR ERV1 1 31 -604 2247 123 0 3 chr1 125128997 125129306 -157064358 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr1 125129329 125129350 -157064314 + AT_rich Low_complexity Low_complexity 1 21 0 1865 164 0 13 chr1 125129358 125129668 -157063996 + AluSx SINE Alu 1 306 -6 189 0 0 0 chr1 125129668 125129689 -157063975 + (CA)n Simple_repeat Simple_repeat 2 22 0 740 121 96 131 chr1 125129689 125129888 -157063776 + LTR24C LTR ERV1 36 227 -408 2351 87 0 10 chr1 125129897 125130197 -157063467 - AluY SINE Alu -14 297 1 630 141 43 0 chr1 125130209 125130301 -157063363 - FLAM_C SINE Alu -19 124 29 2180 108 0 16 chr1 125130620 125130927 -157062737 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 125131324 125131345 -157062319 + AT_rich Low_complexity Low_complexity 1 21 0 2492 57 0 0 chr1 125131833 125132132 -157061532 - AluY SINE Alu -12 299 1 231 310 0 14 chr1 125132182 125132253 -157061411 + L2 LINE L2 2991 3060 -212 2232 94 3 0 chr1 125132477 125132764 -157060900 + AluSg SINE Alu 7 294 -16 194 318 204 0 chr1 125132818 125132906 -157060758 - L2 LINE L2 -219 3053 2948 1703 174 14 31 chr1 125132947 125133240 -157060424 + AluJb SINE Alu 1 288 -24 264 202 44 18 chr1 125133389 125133503 -157060161 + L1M4 LINE L1 5188 5304 -842 * 7708 146 36 75 chr1 125133493 125134684 -157058980 + L1MCa LINE L1 5 1241 -5185 1728 175 17 14 chr1 125134684 125134975 -157058689 + AluJo SINE Alu 1 292 -20 7708 146 36 75 chr1 125134975 125135371 -157058293 + L1MCa LINE L1 1241 1528 -4898 2286 89 7 7 chr1 125135371 125135664 -157058000 + AluSx SINE Alu 1 293 -19 7708 146 36 75 chr1 125135664 125135724 -157057940 + L1MCa LINE L1 1528 1589 -4837 1057 174 5 56 chr1 125135726 125135939 -157057725 - AluJo SINE Alu -26 286 85 4029 132 69 24 chr1 125135939 125136638 -157057026 + L1MCa LINE L1 1577 2415 -4011 2333 71 0 42 chr1 125136638 125136949 -157056715 + AluY SINE Alu 1 298 -13 4029 132 69 24 chr1 125136949 125137077 -157056587 + L1MCa LINE L1 2415 2536 -3890 1416 188 22 78 chr1 125137086 125137447 -157056217 - MLT1A1 LTR MaLR 0 365 25 980 181 0 6 chr1 125137458 125137629 -157056035 - FRAM SINE Alu -13 163 1 7302 198 61 50 chr1 125137676 125137932 -157055732 - MLT1A1-int LTR MaLR 0 1735 1483 2283 90 7 0 chr1 125137932 125138242 -157055422 - AluSp SINE Alu -1 312 1 7302 198 61 50 chr1 125138242 125139257 -157054407 - MLT1A1-int LTR MaLR -252 1483 480 2309 75 72 12 chr1 125139257 125139588 -157054076 - L1PA8 LINE L1 -2 6170 5820 2053 93 66 0 chr1 125139589 125139878 -157053786 - AluSx SINE Alu -4 308 1 7302 198 61 50 chr1 125139878 125140269 -157053395 - MLT1A1-int LTR MaLR -1254 481 52 2321 71 7 0 chr1 125140269 125140565 -157053099 + AluSg SINE Alu 1 298 -12 1941 201 52 2 chr1 125140593 125141035 -157052629 + L1M4 LINE L1 3579 4042 -2104 1268 164 71 34 chr1 125141496 125141819 -157051845 + Charlie1b DNA MER1_type 81 415 -108 1650 150 37 24 chr1 125141831 125142125 -157051539 + AluJo SINE Alu 1 298 -14 4799 151 39 19 chr1 125142128 125142994 -157050670 - L1MC3 LINE L1 -11 7774 6891 709 100 100 0 chr1 125142999 125143109 -157050555 + Charlie1b DNA MER1_type 403 523 0 400 292 78 52 chr1 125144609 125144763 -157048901 - MIR3 SINE MIR -30 178 21 220 291 47 23 chr1 125144797 125144969 -157048695 + (CAGAGA)n Simple_repeat Simple_repeat 3 178 0 263 268 5 58 chr1 125144983 125145173 -157048491 + (CAGA)n Simple_repeat Simple_repeat 1 180 0 * 301 216 5 84 chr1 125145043 125145291 -157048373 + (CAGAGA)n Simple_repeat Simple_repeat 1 228 0 222 272 19 19 chr1 125145587 125145683 -157047981 + CT-rich Low_complexity Low_complexity 1 96 0 221 191 24 0 chr1 125146734 125146776 -157046888 + L2 LINE L2 3214 3256 -16 1569 171 34 3 chr1 125147342 125147640 -157046024 - AluJb SINE Alu -3 309 3 1285 249 115 26 chr1 125148319 125148745 -157044919 + L2 LINE L2 2850 3313 0 207 0 0 0 chr1 125152583 125152606 -157041058 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 376 299 39 8 chr1 125153177 125153304 -157040360 - MIR SINE MIR -14 248 118 604 196 0 9 chr1 125153587 125153694 -157039970 - L2 LINE L2 -5 3308 3203 563 187 20 0 chr1 125153731 125153838 -157039826 - MER5A DNA MER1_type -77 112 4 239 367 0 13 chr1 125154016 125154095 -157039569 + L2 LINE L2 3186 3263 -9 221 273 71 61 chr1 125154268 125154367 -157039297 + L3b LINE CR1 1281 1380 -203 1100 191 20 5 chr1 125160194 125160393 -157033271 + MER3 DNA MER1_type 8 209 0 440 209 163 20 chr1 125160500 125160653 -157033011 - Charlie7 DNA MER1_type 0 2612 2438 209 270 117 36 chr1 125160739 125160850 -157032814 + MIR3 SINE MIR 87 206 -2 384 281 91 0 chr1 125161092 125161213 -157032451 - MIR SINE MIR -107 155 24 1517 180 16 16 chr1 125161213 125161519 -157032145 - AluJb SINE Alu -6 306 1 192 158 0 0 chr1 125162654 125162692 -157030972 + T-rich Low_complexity Low_complexity 4 41 0 384 269 75 22 chr1 125163218 125163352 -157030312 + MIR SINE MIR 8 148 -114 1713 184 3 0 chr1 125163363 125163672 -157029992 - AluJo SINE Alu -2 310 1 184 29 0 57 chr1 125165341 125165376 -157028288 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 598 265 139 6 chr1 125167233 125167399 -157026265 - MIR SINE MIR -50 212 25 2328 53 3 7 chr1 125167800 125168100 -157025564 + AluY SINE Alu 1 299 -12 258 328 17 73 chr1 125169457 125169634 -157024030 - L2 LINE L2 -220 3052 2886 240 59 0 0 chr1 125170498 125170532 -157023132 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr1 125171094 125171115 -157022549 + (A)n Simple_repeat Simple_repeat 1 21 0 2207 104 0 0 chr1 125171759 125172057 -157021607 - AluSx SINE Alu -14 298 1 22 70 0 0 chr1 125172670 125172713 -157020951 + AT_rich Low_complexity Low_complexity 1 43 0 2199 84 10 0 chr1 125174551 125174848 -157018816 - AluSc SINE Alu -9 300 1 1358 160 13 89 chr1 125174901 125175214 -157018450 - AluJo SINE Alu -23 289 1 184 313 47 16 chr1 125175580 125175644 -157018020 + MIR SINE MIR 73 138 -124 1782 154 3 0 chr1 125176325 125176610 -157017054 + AluSx SINE Alu 1 286 -26 345 24 0 0 chr1 125176629 125176671 -157016993 + (GAA)n Simple_repeat Simple_repeat 2 43 0 1688 152 31 7 chr1 125176682 125176971 -157016693 + AluJb SINE Alu 1 296 -16 21 36 0 0 chr1 125177475 125177503 -157016161 + AT_rich Low_complexity Low_complexity 1 28 0 2192 97 0 10 chr1 125178349 125178647 -157015017 - AluSx SINE Alu -17 295 1 1872 139 0 14 chr1 125179701 125179995 -157013669 - AluJb SINE Alu -22 290 1 569 263 96 8 chr1 125180158 125180398 -157013266 - MIR SINE MIR 0 262 2 475 263 147 32 chr1 125180474 125180630 -157013034 - MER5A DNA MER1_type -6 183 10 2272 115 0 0 chr1 125180722 125181034 -157012630 + AluSx SINE Alu 1 312 0 1989 122 10 0 chr1 125182352 125182646 -157011018 + AluJb SINE Alu 2 298 -14 27 29 0 0 chr1 125183519 125183553 -157010111 + AT_rich Low_complexity Low_complexity 1 34 0 1205 197 53 15 chr1 125183832 125184138 -157009526 + AluJo SINE Alu 9 324 0 1891 133 3 10 chr1 125184153 125184447 -157009217 - AluSx SINE Alu -19 293 2 2105 88 3 3 chr1 125184619 125184904 -157008760 + AluSc SINE Alu 4 288 -21 2102 138 0 0 chr1 125184935 125185240 -157008424 + AluSx SINE Alu 1 305 -7 225 173 0 39 chr1 125185696 125185741 -157007923 + (TA)n Simple_repeat Simple_repeat 1 45 -5 2195 94 7 0 chr1 125185741 125186038 -157007626 - AluSp SINE Alu -14 299 1 225 173 0 39 chr1 125186038 125186044 -157007620 + (TA)n Simple_repeat Simple_repeat 45 50 0 687 161 0 0 chr1 125186094 125186206 -157007458 - Tigger1 DNA MER2_type -1 2417 2306 * 4145 97 12 0 chr1 125186200 125186768 -157006896 - Tigger1 DNA MER2_type -882 1536 962 758 129 9 0 chr1 125186908 125187024 -157006640 + FLAM_C SINE Alu 2 118 -25 993 272 80 54 chr1 125187035 125187379 -157006285 + L1M4 LINE L1 2920 3253 -2893 2215 105 3 6 chr1 125187379 125187693 -157005971 + AluSp SINE Alu 1 313 0 993 272 80 54 chr1 125187693 125188057 -157005607 + L1M4 LINE L1 3253 3647 -2499 798 184 0 14 chr1 125188058 125188205 -157005459 + AluJb SINE Alu 137 281 -31 213 132 0 0 chr1 125188208 125188246 -157005418 + (T)n Simple_repeat Simple_repeat 1 38 0 427 251 117 12 chr1 125188300 125188471 -157005193 + Charlie1 DNA MER1_type 2572 2760 -1 242 175 75 25 chr1 125188751 125188831 -157004833 + Charlie1a DNA MER1_type 52 135 -1320 367 179 26 51 chr1 125188831 125188909 -157004755 + MER96 DNA MER1_type? 93 168 -7 705 236 0 0 chr1 125188915 125189059 -157004605 + Charlie1a DNA MER1_type 129 272 -1183 2917 177 97 28 chr1 125189071 125189198 -157004466 + Charlie1a DNA MER1_type 400 517 -2244 2334 71 10 10 chr1 125189198 125189507 -157004157 - AluY SINE Alu -2 309 1 2917 177 97 28 chr1 125189507 125190091 -157003573 + Charlie1a DNA MER1_type 517 1160 -295 956 194 148 31 chr1 125190140 125190465 -157003199 - MLT1A2 LTR MaLR -11 363 1 2946 214 55 118 chr1 125190466 125190518 -157003146 - MLT1B-int LTR MaLR -1 1370 1316 2037 156 0 3 chr1 125190518 125190819 -157002845 + AluSx SINE Alu 1 300 -12 2946 214 55 118 chr1 125190819 125191139 -157002525 - MLT1B-int LTR MaLR -55 1316 977 827 110 0 89 chr1 125191139 125191285 -157002379 + FLAM_A SINE Alu 1 133 0 2946 214 55 118 chr1 125191285 125191298 -157002366 - MLT1B-int LTR MaLR -394 977 965 2254 106 0 3 chr1 125191298 125191601 -157002063 + AluSq SINE Alu 3 304 -9 1969 131 0 10 chr1 125191602 125191899 -157001765 + AluSg SINE Alu 1 294 -16 2307 100 3 0 chr1 125191901 125192202 -157001462 + AluSx SINE Alu 1 302 -10 2946 214 55 118 chr1 125192202 125193109 -157000555 - MLT1B-int LTR MaLR -407 964 19 812 137 112 35 chr1 125193109 125193130 -157000534 + Charlie1a DNA MER1_type 1243 1261 -1500 1072 254 103 3 chr1 125193130 125193481 -157000183 - MLT1B LTR MaLR -4 386 1 812 137 112 35 chr1 125193481 125193656 -157000008 + Charlie1a DNA MER1_type 1261 1454 -1 204 308 60 17 chr1 125193679 125193796 -156999868 - L2 LINE L2 -639 2675 2554 2230 128 0 0 chr1 125193810 125194114 -156999550 + AluSx SINE Alu 1 304 -8 240 314 0 0 chr1 125194301 125194352 -156999312 + L2 LINE L2 3213 3263 -9 21 0 0 0 chr1 125194545 125194566 -156999098 + AT_rich Low_complexity Low_complexity 1 21 0 260 264 81 23 chr1 125194899 125194986 -156998678 - MIR SINE MIR -50 212 121 304 356 108 16 chr1 125195792 125196107 -156997557 + L2 LINE L2 1894 2237 -1077 1784 178 26 0 chr1 125196265 125196568 -156997096 + AluJb SINE Alu 1 311 -1 206 248 44 9 chr1 125197022 125197135 -156996529 + (TA)n Simple_repeat Simple_repeat 2 118 0 240 184 0 0 chr1 125197176 125197225 -156996439 + (TA)n Simple_repeat Simple_repeat 1 49 0 2386 100 3 0 chr1 125197403 125197713 -156995951 - AluSx SINE Alu -1 311 1 2212 99 26 3 chr1 125197783 125198085 -156995579 - AluSx SINE Alu -3 309 1 246 342 145 26 chr1 125198223 125198294 -156995370 - L2 LINE L2 -1 3271 3210 2126 126 0 13 chr1 125198294 125198603 -156995061 + AluSq SINE Alu 1 305 -8 246 342 145 26 chr1 125198603 125198683 -156994981 - L2 LINE L2 -62 3210 3102 181 305 0 49 chr1 125198989 125199071 -156994593 - L2 LINE L2 -1480 1834 1757 4539 199 66 17 chr1 125199144 125199221 -156994443 - L1M4 LINE L1 -1433 4713 4641 252 0 0 0 chr1 125199221 125199249 -156994415 + (TG)n Simple_repeat Simple_repeat 1 28 0 4539 199 66 17 chr1 125199249 125199332 -156994332 - L1M4 LINE L1 -1505 4641 4564 1844 154 7 0 chr1 125199332 125199635 -156994029 + AluSx SINE Alu 1 305 0 4539 199 66 17 chr1 125199635 125200578 -156993086 - L1M4 LINE L1 -1582 4564 3554 2648 55 0 0 chr1 125201360 125201669 -156991995 - AluY SINE Alu -2 309 1 1047 229 37 0 chr1 125201692 125201906 -156991758 + MER58A DNA MER1_type 1 222 -2 3352 138 72 9 chr1 125201989 125202545 -156991119 - MER6A DNA MER2_type -14 591 1 2332 78 3 0 chr1 125202621 125202925 -156990739 - AluSp SINE Alu 0 305 1 804 164 0 20 chr1 125203042 125203188 -156990476 + FLAM_C SINE Alu 1 143 0 243 0 0 0 chr1 125203455 125203482 -156990182 + (CA)n Simple_repeat Simple_repeat 2 28 0 682 190 17 0 chr1 125203484 125203600 -156990064 - FLAM_A SINE Alu -15 118 1 1956 185 15 25 chr1 125203689 125204089 -156989575 - MER119 DNA MER1_type -87 496 101 678 238 85 12 chr1 125204091 125204255 -156989409 - AluJb SINE Alu -13 299 124 379 278 44 0 chr1 125204255 125204345 -156989319 - MER119 DNA MER1_type -489 94 1 4830 136 18 32 chr1 125204537 125205377 -156988287 + L1MB3 LINE L1 5347 6174 -9 2348 84 0 0 chr1 125205505 125205803 -156987861 + AluY SINE Alu 1 298 -13 29 47 0 0 chr1 125206573 125206616 -156987048 + AT_rich Low_complexity Low_complexity 1 43 0 227 319 133 26 chr1 125206760 125206873 -156986791 - L2 LINE L2 -33 3239 3115 2294 93 27 0 chr1 125206917 125207218 -156986446 + AluSc SINE Alu 1 309 0 2770 168 36 28 chr1 125207290 125207869 -156985795 - L1MB7 LINE L1 -1 6183 5600 2046 112 39 0 chr1 125209466 125209752 -156983912 - AluSg SINE Alu -12 298 2 28 48 0 0 chr1 125209871 125209913 -156983751 + AT_rich Low_complexity Low_complexity 1 42 0 2205 109 0 0 chr1 125209920 125210214 -156983450 + AluSg1 SINE Alu 1 294 -15 26 0 0 0 chr1 125210230 125210256 -156983408 + AT_rich Low_complexity Low_complexity 1 26 0 1270 116 0 11 chr1 125210372 125210553 -156983111 - AluSx SINE Alu -131 181 3 948 112 0 15 chr1 125210555 125210689 -156982975 - AluSg/x SINE Alu -14 296 165 2496 67 0 0 chr1 125210716 125211016 -156982648 + AluY SINE Alu 1 300 -11 449 245 51 51 chr1 125211094 125211290 -156982374 + L1ME3A LINE L1 5970 6165 -5 2164 99 7 10 chr1 125211295 125211588 -156982076 + AluSc SINE Alu 1 292 -17 3118 175 21 4 chr1 125211602 125212134 -156981530 - MER44D DNA MER2_type -9 596 1 1768 180 3 10 chr1 125212436 125212730 -156980934 - AluJb SINE Alu -20 292 1 21 0 0 0 chr1 125213561 125213582 -156980082 + AT_rich Low_complexity Low_complexity 1 21 0 2195 120 3 7 chr1 125213585 125213894 -156979770 + AluSp SINE Alu 1 308 -5 459 296 172 0 chr1 125214349 125214535 -156979129 - MIR SINE MIR -36 226 9 2212 92 7 0 chr1 125214832 125215146 -156978518 + AluSp SINE Alu 1 316 0 271 391 43 0 chr1 125215215 125215353 -156978311 + MIR SINE MIR 5 148 -114 2324 84 10 16 chr1 125215444 125215753 -156977911 + AluSg SINE Alu 4 310 0 22 35 0 0 chr1 125215833 125215862 -156977802 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr1 125215916 125215959 -156977705 + AT_rich Low_complexity Low_complexity 1 43 0 1888 167 0 13 chr1 125216485 125216791 -156976873 - AluJb SINE Alu -10 302 1 2235 93 0 13 chr1 125216982 125217283 -156976381 + AluY SINE Alu 2 298 -13 303 331 0 65 chr1 125217341 125217480 -156976184 + MIR SINE MIR 60 189 -73 2043 129 0 32 chr1 125217737 125218047 -156975617 - AluJb SINE Alu -12 300 1 24 32 0 0 chr1 125220688 125220719 -156972945 + AT_rich Low_complexity Low_complexity 1 31 0 2226 110 0 0 chr1 125220833 125221124 -156972540 - AluSq SINE Alu -20 293 3 1434 150 37 52 chr1 125221608 125221798 -156971866 + MER33 DNA MER1_type 3 187 -2398 2300 56 42 11 chr1 125221798 125222085 -156971579 + AluYa5 SINE Alu 1 296 -15 1434 150 37 52 chr1 125222085 125222220 -156971444 + MER33 DNA MER1_type 187 323 -1 1806 155 0 44 chr1 125222485 125222802 -156970862 + AluJo SINE Alu 3 305 -7 971 172 14 50 chr1 125223096 125223317 -156970347 - L1MB7 LINE L1 -19 6663 6451 5031 220 45 14 chr1 125223317 125223657 -156970007 - L1MB7 LINE L1 -958 5686 5358 2255 102 3 7 chr1 125223657 125223960 -156969704 + AluSq SINE Alu 1 302 -11 5031 220 45 14 chr1 125223960 125224926 -156968738 - L1MB7 LINE L1 -1286 5358 4339 934 195 36 0 chr1 125224935 125225130 -156968534 - L1MB7 LINE L1 -2195 4449 4248 5588 220 61 48 chr1 125225136 125225594 -156968070 - L1MB7 LINE L1 -4948 1594 1143 850 174 0 0 chr1 125225594 125225726 -156967938 - FLAM_C SINE Alu -1 132 1 5588 220 61 48 chr1 125225726 125226832 -156966832 - L1MB7 LINE L1 -5399 1143 10 2490 66 0 3 chr1 125227267 125227568 -156966096 - AluY SINE Alu -11 300 1 333 256 131 34 chr1 125229081 125229257 -156964407 - L1ME LINE L1 -338 5783 5591 694 223 150 34 chr1 125229825 125230058 -156963606 - MER102a DNA MER1_type 0 330 71 1456 230 114 73 chr1 125230328 125230959 -156962705 + Charlie2b DNA MER1_type 15 671 -2111 885 198 15 5 chr1 125231025 125231222 -156962442 + Charlie2a DNA MER1_type 1469 1667 -1195 841 195 120 107 chr1 125231219 125231420 -156962244 + Charlie2a DNA MER1_type 2379 2576 -286 * 2355 93 6 3 chr1 125231420 125231732 -156961932 + AluSp SINE Alu 1 313 0 841 195 120 107 chr1 125231732 125231771 -156961893 + Charlie2a DNA MER1_type 2576 2613 -249 1478 194 35 14 chr1 125231771 125232055 -156961609 - AluJo SINE Alu -22 290 1 841 195 120 107 chr1 125232055 125232289 -156961375 + Charlie2a DNA MER1_type 2613 2860 -2 740 247 115 4 chr1 125232694 125232929 -156960735 + MIR SINE MIR 2 262 0 2210 106 3 0 chr1 125232980 125233273 -156960391 - AluSx SINE Alu -18 294 1 254 337 14 149 chr1 125233314 125233670 -156959994 - L2 LINE L2 -38 3234 2927 237 216 0 0 chr1 125233673 125233710 -156959954 + AluJ/monomer SINE Alu 5 41 -262 403 197 0 0 chr1 125233714 125233780 -156959884 + FRAM SINE Alu 74 139 -37 1209 162 0 60 chr1 125234655 125234890 -156958774 + AluJo SINE Alu 1 221 -91 1906 142 0 20 chr1 125235108 125235410 -156958254 + AluSx SINE Alu 1 296 -16 342 0 0 0 chr1 125235410 125235448 -156958216 + (TA)n Simple_repeat Simple_repeat 2 39 0 306 0 0 0 chr1 125235464 125235498 -156958166 + (CA)n Simple_repeat Simple_repeat 2 35 0 191 286 20 0 chr1 125235705 125235754 -156957910 + L2 LINE L2 3231 3280 -33 746 168 0 84 chr1 125236265 125236383 -156957281 + AluJo SINE Alu 7 111 -201 2195 107 10 0 chr1 125236383 125236674 -156956990 - AluSq SINE Alu -19 294 1 746 168 0 84 chr1 125236674 125236710 -156956954 + AluJo SINE Alu 111 148 -164 431 65 0 0 chr1 125236710 125236772 -156956892 + MER41A LTR ERV1 405 466 -88 1162 129 16 43 chr1 125236772 125236958 -156956706 + AluJo SINE Alu 120 300 -12 275 341 0 0 chr1 125237232 125237314 -156956350 - L2 LINE L2 -5 3308 3227 1403 216 103 3 chr1 125237728 125238079 -156955585 - MLT1B LTR MaLR -4 386 1 817 149 91 17 chr1 125238079 125238254 -156955410 + Charlie1 DNA MER1_type 2573 2760 -1 259 339 69 55 chr1 125238277 125238408 -156955256 - L2 LINE L2 -639 2675 2547 2193 117 3 0 chr1 125238408 125238707 -156954957 + AluSq SINE Alu 1 300 -13 259 339 69 55 chr1 125238707 125239070 -156954594 - L2 LINE L2 -767 2547 2174 1877 168 10 3 chr1 125239111 125239408 -156954256 - AluJo SINE Alu -13 299 1 197 226 170 0 chr1 125239906 125239959 -156953705 + L2 LINE L2 3008 3069 -244 890 139 0 0 chr1 125240136 125240258 -156953406 + FLAM_C SINE Alu 3 124 -19 2158 116 17 0 chr1 125240339 125240631 -156953033 + AluSx SINE Alu 1 297 -15 2141 118 7 3 chr1 125240632 125240929 -156952735 + AluSc SINE Alu 2 299 -10 1152 246 115 70 chr1 125241065 125241498 -156952166 + MLT1J LTR MaLR 3 462 -49 2094 167 55 3 chr1 125241498 125241845 -156951819 - MLT1A1 LTR MaLR 0 365 1 1152 246 115 70 chr1 125241845 125241898 -156951766 + MLT1J LTR MaLR 462 511 0 430 267 67 27 chr1 125242434 125242584 -156951080 + MIR SINE MIR 1 156 -106 1813 133 0 89 chr1 125242747 125243084 -156950580 + AluJo SINE Alu 1 307 -5 365 223 0 78 chr1 125243179 125243282 -156950382 - AluSc SINE Alu -2 297 203 385 277 39 31 chr1 125243396 125243526 -156950138 + MIR SINE MIR 26 156 -106 1830 131 0 89 chr1 125243688 125244025 -156949639 + AluJo SINE Alu 1 307 -5 1752 175 10 16 chr1 125244120 125244428 -156949236 - AluJb SINE Alu -6 306 1 1866 180 0 3 chr1 125244866 125245166 -156948498 + AluJb SINE Alu 1 299 -13 500 273 204 18 chr1 125245304 125245524 -156948140 - MIR SINE MIR 0 262 2 1496 201 7 10 chr1 125245752 125246060 -156947604 - AluJo SINE Alu -5 307 1 513 287 30 60 chr1 125246082 125246249 -156947415 - MIR SINE MIR -39 169 8 759 174 17 0 chr1 125246296 125246411 -156947253 - FLAM_C SINE Alu -15 118 2 799 206 0 15 chr1 125246696 125246832 -156946832 + AluJo SINE Alu 2 135 -177 40 0 0 0 chr1 125246953 125246993 -156946671 + AT_rich Low_complexity Low_complexity 1 40 0 1565 178 59 3 chr1 125247028 125247314 -156946350 - AluJb SINE Alu -10 302 1 393 298 70 13 chr1 125247345 125247503 -156946161 - MIR SINE MIR 0 262 96 976 192 6 0 chr1 125247559 125247715 -156945949 + FAM SINE Alu 1 157 -18 1898 151 11 0 chr1 125247783 125248067 -156945597 - AluSx SINE Alu -25 287 1 360 264 88 124 chr1 125248090 125248283 -156945381 + Charlie8 DNA MER1_type 140 1423 -994 270 318 0 0 chr1 125248318 125248406 -156945258 + MER103 DNA DNA 79 166 0 25 0 0 0 chr1 125248449 125248474 -156945190 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 3 0 chr1 125248492 125248792 -156944872 + AluSx SINE Alu 1 301 -11 2389 95 0 3 chr1 125249478 125249783 -156943881 + AluSq SINE Alu 1 304 -9 557 171 0 67 chr1 125250061 125250166 -156943498 + AluJo SINE Alu 121 218 -94 180 0 0 0 chr1 125250177 125250197 -156943467 + (A)n Simple_repeat Simple_repeat 1 20 0 2119 115 21 0 chr1 125250286 125250574 -156943090 - AluSq SINE Alu -19 294 1 1994 146 3 7 chr1 125250768 125251063 -156942601 - AluJb SINE Alu -14 298 5 364 346 150 29 chr1 125251138 125251703 -156941961 - L2 LINE L2 -20 3252 2595 216 0 0 0 chr1 125251897 125251921 -156941743 + (TAA)n Simple_repeat Simple_repeat 3 26 0 2219 89 48 0 chr1 125253348 125253639 -156940025 + AluSq SINE Alu 1 305 -8 27 62 0 0 chr1 125253810 125253858 -156939806 + AT_rich Low_complexity Low_complexity 1 48 0 2078 87 0 83 chr1 125253858 125254170 -156939494 - AluSq SINE Alu -27 286 1 1937 148 21 0 chr1 125254534 125254825 -156938839 + AluJb SINE Alu 1 297 -15 203 227 0 0 chr1 125254877 125254921 -156938743 - MIR SINE MIR -37 225 182 2836 185 114 70 chr1 125254977 125255085 -156938579 - L1ME2 LINE L1 -9 6155 6053 2357 103 0 3 chr1 125255085 125255396 -156938268 - AluSg SINE Alu 0 310 1 2836 185 114 70 chr1 125255396 125256570 -156937094 - L1ME2 LINE L1 -111 6053 4832 31 44 0 0 chr1 125256620 125256665 -156936999 + AT_rich Low_complexity Low_complexity 1 45 0 2575 62 3 0 chr1 125257131 125257435 -156936229 - AluY SINE Alu -6 305 1 834 156 7 22 chr1 125257529 125257645 -156936019 + AluJo SINE Alu 2 117 -195 297 68 0 0 chr1 125257645 125257689 -156935975 + (TA)n Simple_repeat Simple_repeat 1 44 0 834 156 7 22 chr1 125257689 125257707 -156935957 + AluJo SINE Alu 117 134 -178 4030 150 110 4 chr1 125257712 125258467 -156935197 + L1MB7 LINE L1 5333 6167 -17 2225 105 0 7 chr1 125258480 125258786 -156934878 + AluSc SINE Alu 1 304 -5 661 286 33 15 chr1 125259755 125260028 -156933636 + AluJo SINE Alu 2 279 -33 279 0 0 0 chr1 125260044 125260075 -156933589 + (CA)n Simple_repeat Simple_repeat 1 31 0 2400 99 0 10 chr1 125260467 125260779 -156932885 - AluSx SINE Alu -3 309 1 1444 182 32 95 chr1 125260780 125261159 -156932505 - MLT1A1 LTR MaLR -10 355 1 609 147 10 20 chr1 125261305 125261407 -156932257 - FLAM_A SINE Alu -11 131 31 967 325 80 12 chr1 125261723 125262283 -156931381 + L1MC4a LINE L1 5314 5911 -1897 2515 52 0 10 chr1 125262454 125262761 -156930903 + AluY SINE Alu 1 304 -7 2283 86 27 3 chr1 125262782 125263083 -156930581 - AluSx SINE Alu -4 308 1 2187 113 0 3 chr1 125263366 125263668 -156929996 + AluSc SINE Alu 1 301 -8 2453 85 0 0 chr1 125263929 125264236 -156929428 + AluY SINE Alu 1 307 -4 934 217 5 24 chr1 125264300 125264512 -156929152 + AluJo SINE Alu 85 292 -20 622 308 78 1 chr1 125265070 125265401 -156928263 - LTR16C LTR ERVL 0 491 117 1843 102 0 45 chr1 125265524 125265788 -156927876 + AluSx SINE Alu 56 307 -5 2137 68 3 62 chr1 125266062 125266369 -156927295 + AluY SINE Alu 21 309 -2 2365 98 10 0 chr1 125266663 125266969 -156926695 + AluSx SINE Alu 1 309 -3 214 224 60 60 chr1 125267053 125267120 -156926544 + MIR SINE MIR 87 153 -55 220 365 148 17 chr1 125267229 125267344 -156926320 + L2 LINE L2 3119 3248 -24 808 144 0 8 chr1 125268664 125268789 -156924875 + FLAM_C SINE Alu 13 136 -7 957 139 6 36 chr1 125269413 125269579 -156924085 + AluJb SINE Alu 138 298 -14 502 256 87 123 chr1 125269695 125270031 -156923633 + L1ME LINE L1 5265 5612 -562 2386 76 3 3 chr1 125270031 125270334 -156923330 + AluSp SINE Alu 3 305 -8 1781 159 0 21 chr1 125270341 125270651 -156923013 + AluJo SINE Alu 1 304 0 502 256 87 123 chr1 125270651 125270883 -156922781 + L1ME LINE L1 5618 5821 -353 305 232 0 0 chr1 125270888 125270957 -156922707 + L1ME2 LINE L1 5451 5519 -643 536 180 4 16 chr1 125270959 125271189 -156922475 + AluJo SINE Alu 1 296 -16 2677 196 56 34 chr1 125271192 125271379 -156922285 + L1ME2 LINE L1 5514 5695 -469 2225 110 0 0 chr1 125271379 125271678 -156921986 + AluSx SINE Alu 1 299 -13 2677 196 56 34 chr1 125271678 125272117 -156921547 + L1ME2 LINE L1 5695 6154 -10 1308 195 4 0 chr1 125272146 125272372 -156921292 + AluJb SINE Alu 70 296 -16 2370 78 7 3 chr1 125272405 125272701 -156920963 + AluSq SINE Alu 1 297 -16 1465 190 29 4 chr1 125273244 125273518 -156920146 + AluJo SINE Alu 1 281 -31 297 0 0 0 chr1 125273530 125273563 -156920101 + (CA)n Simple_repeat Simple_repeat 1 33 0 1509 154 0 0 chr1 125277123 125277357 -156916307 - AluSq SINE Alu -79 234 1 338 159 0 0 chr1 125277567 125277630 -156916034 - Alu SINE Alu -1 299 237 2387 73 0 3 chr1 125277768 125278068 -156915596 - AluSg SINE Alu -11 299 1 2204 107 0 13 chr1 125278891 125279189 -156914475 - AluSg SINE Alu -13 297 4 2174 99 0 0 chr1 125279406 125279688 -156913976 + AluSp SINE Alu 1 282 -31 2214 129 0 6 chr1 125279788 125280099 -156913565 - AluSx SINE Alu -3 309 1 1816 167 0 30 chr1 125280951 125281250 -156912414 + AluJo SINE Alu 3 292 -20 921 149 6 31 chr1 125281421 125281582 -156912082 + FRAM SINE Alu 1 157 -19 516 265 152 72 chr1 125281831 125281902 -156911762 - L1 LINE L1 -2017 4129 4065 1717 155 28 14 chr1 125281902 125282192 -156911472 + AluJb SINE Alu 1 294 -18 516 265 152 72 chr1 125282192 125282535 -156911129 - L1 LINE L1 -2081 4065 3682 364 286 0 11 chr1 125282970 125283061 -156910603 - MIR SINE MIR -126 136 47 466 247 13 60 chr1 125283285 125283435 -156910229 - MER5A DNA MER1_type -34 155 13 683 115 19 0 chr1 125283946 125284050 -156909614 - AluSc SINE Alu -2 307 202 444 149 15 0 chr1 125284050 125284117 -156909547 - AluY SINE Alu -131 170 103 2011 142 0 0 chr1 125284217 125284506 -156909158 + AluSq SINE Alu 8 296 -17 298 320 70 70 chr1 125286005 125286177 -156907487 - L3 LINE CR1 -2 1575 1404 252 88 0 0 chr1 125286346 125286380 -156907284 + U2 snRNA snRNA 4 37 -151 1373 254 68 3 chr1 125286760 125287142 -156906522 - L2 LINE L2 -507 2807 2401 1996 123 0 18 chr1 125287364 125287649 -156906015 + AluSx SINE Alu 1 280 -32 2363 91 10 0 chr1 125287730 125288027 -156905637 + AluSp SINE Alu 1 300 -13 710 109 30 0 chr1 125288118 125288219 -156905445 + U13 snRNA snRNA 1 104 0 752 183 25 0 chr1 125288716 125288836 -156904828 + FLAM_A SINE Alu 1 123 -10 30 27 0 0 chr1 125289088 125289125 -156904539 + AT_rich Low_complexity Low_complexity 1 37 0 310 191 101 22 chr1 125289679 125289768 -156903896 + L1ME4a LINE L1 5873 5968 -153 23 54 0 0 chr1 125290503 125290540 -156903124 + AT_rich Low_complexity Low_complexity 1 37 0 979 85 39 16 chr1 125290728 125290857 -156902807 + AluSq/x SINE Alu 1 132 -181 1515 117 0 0 chr1 125290957 125291154 -156902510 - AluSq SINE Alu -116 197 1 346 247 181 36 chr1 125291246 125291412 -156902252 + MIR SINE MIR 16 205 -57 201 182 0 0 chr1 125292835 125292868 -156900796 + T-rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr1 125293323 125293347 -156900317 + AT_rich Low_complexity Low_complexity 1 24 0 579 180 0 0 chr1 125293347 125293436 -156900228 - AluSg/x SINE Alu -18 291 203 339 25 0 0 chr1 125293516 125293556 -156900108 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 2161 105 3 3 chr1 125293556 125293842 -156899822 - AluSp SINE Alu -27 286 1 677 181 65 117 chr1 125293983 125294148 -156899516 - Charlie1b DNA MER1_type -2388 373 232 2072 110 58 0 chr1 125294148 125294440 -156899224 - AluSq SINE Alu -4 309 1 677 181 65 117 chr1 125294440 125294599 -156899065 - Charlie1b DNA MER1_type -2529 232 66 447 260 103 58 chr1 125294885 125295127 -156898537 + MIR SINE MIR 5 257 -5 216 67 0 0 chr1 125296018 125296048 -156897616 + (T)n Simple_repeat Simple_repeat 1 30 0 1617 106 4 0 chr1 125298613 125298848 -156894816 - MER41B LTR ERV1 -399 236 1 786 303 120 26 chr1 125301438 125301821 -156891843 + L3 LINE CR1 739 1157 -420 1356 179 77 55 chr1 125302106 125302469 -156891195 - MER31B LTR ERV1 0 466 96 364 194 28 0 chr1 125302569 125302641 -156891023 - MER31B LTR ERV1 -392 74 1 302 329 58 15 chr1 125302927 125303064 -156890600 + L3 LINE CR1 1178 1320 -257 189 370 76 25 chr1 125303132 125303251 -156890413 + L2 LINE L2 2992 3116 -156 271 321 15 61 chr1 125303338 125303469 -156890195 + L2 LINE L2 3147 3271 -1 202 178 0 44 chr1 125303646 125303691 -156889973 - L2 LINE L2 -1 3312 3270 324 318 104 13 chr1 125303801 125303955 -156889709 + MIR SINE MIR 64 231 -31 394 286 66 37 chr1 125304288 125304608 -156889056 - L2 LINE L2 -199 3073 2660 479 216 94 18 chr1 125304608 125304779 -156888885 + MER112 DNA MER1_type 19 202 -58 181 156 0 89 chr1 125304803 125304848 -156888816 + L3 LINE CR1 1520 1560 -17 836 294 101 46 chr1 125305027 125305572 -156888092 + L2 LINE L2 2172 2746 -568 261 128 0 0 chr1 125305629 125305676 -156887988 + (CTA)n Simple_repeat Simple_repeat 1 47 0 235 286 83 0 chr1 125306107 125306191 -156887473 + L2 LINE L2 2796 2886 -428 574 249 18 41 chr1 125306208 125306377 -156887287 - MIR SINE MIR 0 262 98 549 267 69 94 chr1 125306410 125306770 -156886894 + L2 LINE L2 2921 3271 -1 2445 94 0 0 chr1 125308865 125309174 -156884490 - AluSx SINE Alu -3 309 1 982 208 60 11 chr1 125309186 125309451 -156884213 - L1MB8 LINE L1 0 6178 5901 331 264 46 23 chr1 125309654 125309741 -156883923 + L1MC4 LINE L1 6614 6702 -1340 53 0 0 0 chr1 125309748 125309801 -156883863 + AT_rich Low_complexity Low_complexity 1 53 0 6606 71 23 32 chr1 125310533 125311564 -156882100 + SVA Other Other 433 1385 -1 22 35 0 0 chr1 125311564 125311593 -156882071 + AT_rich Low_complexity Low_complexity 1 29 0 605 213 149 50 chr1 125311881 125312102 -156881562 - MIR SINE MIR -10 252 10 1996 130 43 17 chr1 125312261 125312560 -156881104 + AluJb SINE Alu 1 307 -5 2126 116 3 26 chr1 125312564 125312866 -156880798 + AluSp SINE Alu 1 295 -18 227 333 103 26 chr1 125313063 125313180 -156880484 + MER5A DNA MER1_type 63 188 -1 1529 276 167 15 chr1 125313625 125314425 -156879239 + L2 LINE L2 2382 3313 0 1235 153 60 34 chr1 125314926 125315161 -156878503 - AluJo SINE Alu -2 310 70 25 0 0 0 chr1 125315202 125315227 -156878437 + AT_rich Low_complexity Low_complexity 1 25 0 2170 117 7 3 chr1 125315227 125315536 -156878128 - AluSg SINE Alu 0 310 1 755 156 16 8 chr1 125315539 125315667 -156877997 - AluJo/FLAM SINE Alu -173 129 1 920 186 35 6 chr1 125315850 125316022 -156877642 + MER5B DNA MER1_type 2 178 0 1007 174 267 19 chr1 125316853 125316916 -156876748 - MER31B LTR ERV1 -1 465 419 2039 114 48 10 chr1 125316916 125317206 -156876458 + AluSq SINE Alu 1 301 -12 1007 174 267 19 chr1 125317206 125317453 -156876211 - MER31B LTR ERV1 -47 419 78 4464 133 22 37 chr1 125318011 125318988 -156874676 - L1MA7 LINE L1 -186 6105 5145 270 313 0 40 chr1 125319496 125319595 -156874069 - MIR SINE MIR 0 262 168 374 57 19 0 chr1 125319621 125319674 -156873990 - U7 snRNA snRNA -6 57 4 181 208 143 52 chr1 125319675 125319752 -156873912 - MIR SINE MIR -81 181 98 181 321 0 48 chr1 125319869 125319953 -156873711 - L2 LINE L2 -8 3264 3185 952 101 176 0 chr1 125320468 125320616 -156873048 - AluSg SINE Alu -136 174 1 2307 100 3 0 chr1 125320644 125320943 -156872721 + AluSg SINE Alu 1 300 -10 23 78 0 0 chr1 125321323 125321374 -156872290 + AT_rich Low_complexity Low_complexity 1 51 0 308 326 145 0 chr1 125321754 125321996 -156871668 - L3 LINE CR1 -759 818 542 * 336 303 26 66 chr1 125321995 125322147 -156871517 + MIR SINE MIR 42 187 -75 201 218 269 0 chr1 125322192 125322270 -156871394 - L2 LINE L2 0 3313 3215 797 158 84 64 chr1 125322281 125322331 -156871333 + MER58 DNA MER1_type 1 49 -292 1808 167 0 17 chr1 125322331 125322647 -156871017 - AluJo SINE Alu 0 311 1 797 158 84 64 chr1 125322647 125322796 -156870868 + MER58 DNA MER1_type 49 206 -135 328 295 97 58 chr1 125322863 125323070 -156870594 - L2 LINE L2 -96 3217 3003 389 274 158 94 chr1 125323671 125323833 -156869831 - L2 LINE L2 0 3313 3163 1733 151 11 32 chr1 125323833 125324117 -156869547 + AluJb SINE Alu 12 289 -23 389 274 158 94 chr1 125324117 125324359 -156869305 - L2 LINE L2 -150 3163 2883 524 268 121 19 chr1 125324868 125325025 -156868639 + MIR3 SINE MIR 24 196 -12 1773 169 44 3 chr1 125325143 125325439 -156868225 - AluJb SINE Alu -4 308 1 180 0 0 0 chr1 125325441 125325461 -156868203 + (T)n Simple_repeat Simple_repeat 1 20 0 512 142 117 9 chr1 125326803 125327002 -156866662 + AluJo SINE Alu 2 290 -22 347 275 0 0 chr1 125327040 125327120 -156866544 + MER91B DNA MER1_type 4 83 -107 358 202 212 0 chr1 125327420 125327519 -156866145 + MIR3 SINE MIR 35 154 -54 2053 136 10 7 chr1 125327533 125327835 -156865829 + AluSx SINE Alu 1 303 -9 294 299 104 19 chr1 125328719 125328873 -156864791 + MIR3 SINE MIR 5 171 -37 2202 109 0 45 chr1 125328948 125329261 -156864403 + AluSx SINE Alu 1 299 -13 268 195 52 52 chr1 125329325 125329402 -156864262 + MIR SINE MIR 185 261 -1 276 327 9 27 chr1 125330700 125330810 -156862854 - MER5B DNA MER1_type -62 116 9 699 216 47 23 chr1 125330898 125331069 -156862595 + MER5B DNA MER1_type 4 178 0 213 340 160 0 chr1 125331083 125331189 -156862475 - MER5A DNA MER1_type -66 123 1 192 139 83 28 chr1 125334149 125334185 -156859479 + MIR SINE MIR 86 123 -85 225 244 0 22 chr1 125334991 125335036 -156858628 - L2 LINE L2 -20 3252 3209 577 301 12 12 chr1 125335113 125335279 -156858385 - MIR SINE MIR -65 197 32 401 335 68 14 chr1 125336138 125336359 -156857305 - MIR SINE MIR -10 252 20 185 235 15 73 chr1 125338170 125338185 -156855479 + L2 LINE L2 2070 2084 -1230 189 0 0 0 chr1 125338185 125338206 -156855458 + (TC)n Simple_repeat Simple_repeat 2 22 0 554 0 15 0 chr1 125338206 125338272 -156855392 + (CA)n Simple_repeat Simple_repeat 2 68 0 185 235 15 73 chr1 125338272 125338323 -156855341 + L2 LINE L2 2082 2133 -1181 36 97 0 0 chr1 125338868 125338981 -156854683 + GC_rich Low_complexity Low_complexity 1 113 0 4462 64 11 0 chr1 125539535 125540098 -156653566 + L1PA6 LINE L1 5586 6154 0 22 0 0 0 chr1 125540098 125540120 -156653544 + AT_rich Low_complexity Low_complexity 1 22 0 285 236 0 94 chr1 125540246 125540352 -156653312 - MER31-int LTR ERV1 -1949 2987 2892 1377 116 0 16 chr1 125540354 125540543 -156653121 + AluSc SINE Alu 1 186 -123 21 0 0 0 chr1 125542069 125542090 -156651574 + AT_rich Low_complexity Low_complexity 1 21 0 827 247 7 0 chr1 125542090 125542240 -156651424 - FRAM SINE Alu -14 152 2 2052 135 138 26 chr1 125542423 125542808 -156650856 + MSTA LTR MaLR 1 428 0 2194 144 42 31 chr1 125543493 125543853 -156649811 - THE1B LTR MaLR 0 364 1 11586 110 11 5 chr1 125543853 125545423 -156648241 - THE1B-int LTR MaLR 0 1580 1 2370 111 44 33 chr1 125545423 125545783 -156647881 - THE1B LTR MaLR 0 364 1 1789 182 7 0 chr1 125545996 125546287 -156647377 - AluJb SINE Alu -19 293 1 283 287 87 67 chr1 125546336 125546486 -156647178 - MER31-int LTR ERV1 -1870 3066 2914 2254 125 0 3 chr1 125546502 125546815 -156646849 - AluSx SINE Alu 0 312 1 1964 122 44 10 chr1 125546815 125547109 -156646555 - AluSx SINE Alu -8 304 1 28 0 0 0 chr1 125547422 125547450 -156646214 + AT_rich Low_complexity Low_complexity 1 28 0 385 266 122 26 chr1 125547835 125548139 -156645525 - MER31-int LTR ERV1 -2782 2154 1822 464 231 25 0 chr1 125548449 125548570 -156645094 - LTR37A LTR ERV1 -6 420 297 245 263 18 0 chr1 125548599 125548656 -156645008 - LTR37A LTR ERV1 -241 185 128 5049 144 31 26 chr1 125548728 125548880 -156644784 - L1MA4 LINE L1 -2 7000 6850 201 39 0 0 chr1 125548880 125548906 -156644758 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1564 144 78 4 chr1 125548910 125549166 -156644498 - AluSx SINE Alu -37 275 1 5049 144 31 26 chr1 125549166 125549929 -156643735 - L1MA4 LINE L1 -154 6848 6075 807 197 0 28 chr1 125549933 125550075 -156643589 - FRAM SINE Alu -3 173 36 4434 170 20 24 chr1 125550085 125550144 -156643520 - L1MA4 LINE L1 -2103 4745 4687 1843 162 170 19 chr1 125550144 125550515 -156643149 - MSTA LTR MaLR -1 427 1 4434 170 20 24 chr1 125550515 125551350 -156642314 - L1MA4 LINE L1 -2161 4687 3854 206 160 20 0 chr1 125551750 125551800 -156641864 + (TA)n Simple_repeat Simple_repeat 1 51 0 273 146 0 0 chr1 125553838 125553886 -156639778 + (CGG)n Simple_repeat Simple_repeat 3 50 0 4039 210 18 115 chr1 125553967 125555701 -156637963 - L1MA4 LINE L1 -2965 3883 2287 1833 150 29 4 chr1 125555703 125555983 -156637681 - MSTB LTR MaLR -1 425 139 2057 154 114 35 chr1 125555983 125556024 -156637640 - MSTB LTR MaLR 0 426 390 1754 152 55 0 chr1 125556024 125556313 -156637351 + AluSx SINE Alu 1 305 -7 2057 154 114 35 chr1 125556313 125556666 -156636998 - MSTB LTR MaLR -36 390 1 4206 211 21 55 chr1 125556668 125557733 -156635931 - L1MA4 LINE L1 -4649 2200 1173 23 0 0 0 chr1 125557736 125557759 -156635905 + AT_rich Low_complexity Low_complexity 1 23 0 589 152 174 61 chr1 125557761 125557893 -156635771 + MSTA LTR MaLR 96 244 -184 247 286 11 22 chr1 125557898 125557989 -156635675 + (CATATA)n Simple_repeat Simple_repeat 4 93 0 226 282 56 35 chr1 125557998 125558140 -156635524 - MLT1L LTR MaLR -87 528 384 350 235 0 0 chr1 125558177 125558245 -156635419 + LTR33 LTR ERVL 100 167 -354 1091 224 9 9 chr1 125558245 125558464 -156635200 - MLT2B1 LTR ERVL -88 432 214 333 342 98 5 chr1 125558756 125558949 -156634715 - L2 LINE L2 -495 2819 2609 262 322 243 3 chr1 125559225 125559526 -156634138 - L2 LINE L2 -894 2420 2048 845 257 41 115 chr1 125559603 125559969 -156633695 - MER70B LTR ERVL -148 430 92 27 0 0 0 chr1 125560871 125560898 -156632766 + AT_rich Low_complexity Low_complexity 1 27 0 1725 159 3 14 chr1 125561020 125561303 -156632361 - AluJo SINE Alu -24 288 9 2129 112 3 13 chr1 125562140 125562444 -156631220 - AluSx SINE Alu -8 304 4 471 224 160 37 chr1 125562629 125562880 -156630784 + MLT1H LTR MaLR 209 555 0 2385 93 3 0 chr1 125563129 125563441 -156630223 - AluSp SINE Alu 0 313 1 291 168 202 17 chr1 125563470 125563589 -156630075 + L1MC2 LINE L1 6097 6237 -107 623 154 43 68 chr1 125563600 125563762 -156629902 + L1MC2 LINE L1 6161 6318 -26 207 0 0 0 chr1 125563767 125563790 -156629874 + (CAA)n Simple_repeat Simple_repeat 2 24 0 368 339 73 17 chr1 125565318 125565551 -156628113 - MIR SINE MIR -2 260 15 227 241 17 17 chr1 125565650 125565708 -156627956 - L2 LINE L2 -92 3221 3164 1974 158 0 0 chr1 125566053 125566350 -156627314 + AluJb SINE Alu 1 297 -15 1541 184 129 14 chr1 125566685 125567033 -156626631 - MSTD LTR MaLR 0 396 9 286 179 0 107 chr1 125567045 125567129 -156626535 + MIR SINE MIR 179 253 -9 268 229 97 120 chr1 125567123 125567390 -156626274 - L2 LINE L2 -1001 2313 2053 * 368 379 23 9 chr1 125567433 125567652 -156626012 - L2 LINE L2 -1228 2086 1865 244 230 138 49 chr1 125569040 125569270 -156624394 + L1MC5 LINE L1 7516 7873 -169 284 137 0 20 chr1 125569281 125569332 -156624332 + L1MC4 LINE L1 6654 6703 -1339 34 0 0 0 chr1 125569422 125569456 -156624208 + AT_rich Low_complexity Low_complexity 1 34 0 489 304 36 36 chr1 125569683 125569877 -156623787 - MIR SINE MIR -40 222 29 239 79 26 0 chr1 125570957 125570995 -156622669 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 445 325 61 6 chr1 125571002 125571165 -156622499 + MIR SINE MIR 17 188 -74 200 195 171 0 chr1 125571502 125571543 -156622121 + L2 LINE L2 3264 3311 -2 555 192 0 0 chr1 125571707 125571806 -156621858 + Charlie8 DNA MER1_type 103 201 -2216 882 227 62 5 chr1 125572981 125573175 -156620489 - MLT1A2 LTR MaLR -169 205 1 1931 93 11 30 chr1 125573482 125573750 -156619914 - AluSq SINE Alu -50 263 1 3389 150 40 0 chr1 125573751 125574324 -156619340 - L1MB7 LINE L1 -44 6140 5545 1626 303 47 4 chr1 125574495 125574981 -156618683 + MLT1J LTR MaLR 1 507 -4 186 269 0 39 chr1 125574997 125575049 -156618615 + MIR SINE MIR 12 61 -201 803 196 0 8 chr1 125575059 125575192 -156618472 + FLAM_A SINE Alu 2 133 0 752 321 104 17 chr1 125575197 125575668 -156617996 + L2 LINE L2 2461 2972 -342 317 227 133 0 chr1 125575788 125575863 -156617801 + L2 LINE L2 3229 3313 0 491 248 57 14 chr1 125575872 125576013 -156617651 + MIR SINE MIR 67 213 -49 402 270 145 23 chr1 125576371 125576552 -156617112 + MIR SINE MIR 39 248 -14 635 208 25 8 chr1 125577229 125577349 -156616315 - MER45 DNA AcHobo -56 122 1 2922 71 6 0 chr1 125577852 125578205 -156615459 + THE1A LTR MaLR 1 355 0 261 0 0 0 chr1 125578268 125578297 -156615367 + (CA)n Simple_repeat Simple_repeat 1 29 0 197 200 0 22 chr1 125579182 125579227 -156614437 + L2 LINE L2 3270 3313 0 362 340 26 33 chr1 125579296 125579449 -156614215 + MER5A DNA MER1_type 7 158 -31 2792 121 27 76 chr1 125580003 125580042 -156613622 - LTR24 LTR ERV1 0 467 428 1679 210 0 3 chr1 125580042 125580333 -156613331 + AluJb SINE Alu 1 290 -22 2792 121 27 76 chr1 125580333 125580781 -156612883 - LTR24 LTR ERV1 -39 428 4 291 220 8 0 chr1 125580898 125580975 -156612689 + LTR49 LTR ERV1 1 365 -507 1951 227 63 13 chr1 125580992 125581639 -156612025 - MER50 LTR ERV1 -9 725 10 1728 168 78 18 chr1 125581644 125582105 -156611559 + LTR49 LTR ERV1 61 622 0 322 277 99 21 chr1 125582118 125582259 -156611405 + L2 LINE L2 3162 3313 0 909 167 0 0 chr1 125582580 125582712 -156610952 + FLAM_C SINE Alu 1 132 -1 2668 217 100 45 chr1 125582876 125583659 -156610005 - LTR1B LTR ERV1 0 826 1 4814 94 37 9 chr1 125583815 125584464 -156609200 + PABL_B LTR ERV1 1 667 0 320 339 84 32 chr1 125585156 125585407 -156608257 + L3 LINE CR1 961 1224 -353 1243 212 27 23 chr1 125585524 125585983 -156607681 + LTR29 LTR ERV1 137 644 0 183 367 17 0 chr1 125586015 125586075 -156607589 + L3 LINE CR1 1469 1529 -48 4112 140 34 3 chr1 125586109 125586725 -156606939 - MER41B LTR ERV1 0 635 1 704 192 137 0 chr1 125586726 125586872 -156606792 - MER34C LTR ERV1 -419 166 1 218 364 10 10 chr1 125586874 125586973 -156606691 + MIR SINE MIR 59 157 -105 962 213 45 24 chr1 125587066 125587368 -156606296 - LTR37B LTR ERV1 0 468 131 483 251 61 18 chr1 125587417 125587580 -156606084 - LTR37B LTR ERV1 -294 174 5 1773 190 11 35 chr1 125587706 125588080 -156605584 + MLT2C1 LTR ERVL 1 475 -40 2068 166 35 9 chr1 125588109 125588447 -156605217 + MER7A DNA MER2_type 1 345 -1 237 33 0 0 chr1 125588449 125588479 -156605185 + (TG)n Simple_repeat Simple_repeat 2 31 0 269 118 98 0 chr1 125588480 125588531 -156605133 + MLT2C1 LTR ERVL 460 515 0 1763 151 0 30 chr1 125588957 125589262 -156604402 + AluJb SINE Alu 11 306 -6 428 217 43 22 chr1 125589292 125589384 -156604280 + L2 LINE L2 3193 3286 -27 3630 167 0 42 chr1 125589384 125589505 -156604159 + MER44D DNA MER2_type 28 153 -2334 5697 81 14 3 chr1 125589505 125590219 -156603445 + LTR30 LTR ERV1 1 722 0 3630 167 0 42 chr1 125590219 125590833 -156602831 + MER44D DNA MER2_type 153 605 0 1387 241 22 44 chr1 125590995 125591401 -156602263 + MLT2C1 LTR ERVL 1 397 0 293 136 0 0 chr1 125591457 125591501 -156602163 - MLT2B2 LTR ERVL 0 520 477 633 71 26 0 chr1 125591502 125591615 -156602049 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 2389 166 53 0 chr1 125591622 125592002 -156601662 - MLT2B2 LTR ERVL -115 400 1 359 298 26 0 chr1 125592668 125592782 -156600882 + LTR67 LTR ERVL 441 557 0 25 51 0 0 chr1 125592824 125592863 -156600801 + AT_rich Low_complexity Low_complexity 1 39 0 526 139 0 0 chr1 125592986 125593065 -156600599 + L1PA13 LINE L1 6085 6163 0 836 242 45 104 chr1 125593074 125593496 -156600168 - L1MC4a LINE L1 -1854 5954 5558 1257 214 90 65 chr1 125594328 125594764 -156598900 + MLT1H LTR MaLR 98 540 -2 2611 53 0 0 chr1 125595031 125595335 -156598329 - AluY SINE Alu -7 304 1 24 53 0 0 chr1 125595716 125595754 -156597910 + AT_rich Low_complexity Low_complexity 1 38 0 388 187 72 167 chr1 125595810 125596026 -156597638 - L2 LINE L2 0 3313 3133 2537 80 0 6 chr1 125596026 125596340 -156597324 - AluSp SINE Alu -1 312 1 388 187 72 167 chr1 125596340 125596428 -156597236 - L2 LINE L2 -180 3133 3038 189 317 122 0 chr1 125596789 125596871 -156596793 + L3 LINE CR1 1483 1574 -3 12619 149 15 23 chr1 125597211 125600648 -156593016 + L1MA3 LINE L1 2901 6305 0 1497 221 40 21 chr1 125600959 125601335 -156592329 - Charlie6 DNA MER1_type -81 3419 3037 35 0 0 0 chr1 125601335 125601370 -156592294 + AT_rich Low_complexity Low_complexity 1 35 0 816 165 0 15 chr1 125601370 125601503 -156592161 - FLAM_C SINE Alu -12 131 1 1328 208 58 41 chr1 125601505 125601918 -156591746 - Charlie6 DNA MER1_type -453 3047 2628 1972 252 104 23 chr1 125601922 125602565 -156591099 - Charlie6 DNA MER1_type -2805 695 1 212 242 0 48 chr1 125602570 125602632 -156591032 + MIR SINE MIR 168 226 -36 672 186 0 0 chr1 125602632 125602734 -156590930 + AluJo SINE Alu 2 103 -209 2200 146 96 21 chr1 125602734 125603153 -156590511 + LTR7 LTR ERV1 1 450 0 713 163 66 12 chr1 125603153 125603319 -156590345 + HERVH LTR ERV1 1 175 -7538 14983 160 20 31 chr1 125603330 125607178 -156586486 + HERVH LTR ERV1 982 4812 -2287 5894 142 2 0 chr1 125607177 125608084 -156585580 + HERVH LTR ERV1 5108 6016 -1697 * 3602 124 7 4 chr1 125608077 125608632 -156585032 + HERVH LTR ERV1 7157 7713 0 * 1977 150 125 20 chr1 125608632 125609039 -156584625 + LTR7 LTR ERV1 1 450 0 1157 165 31 16 chr1 125609039 125609233 -156584431 + AluJo SINE Alu 99 295 -17 197 339 18 45 chr1 125609393 125609505 -156584159 - L2 LINE L2 -255 3058 2950 225 336 18 18 chr1 125610620 125610733 -156582931 + GA-rich Low_complexity Low_complexity 2 114 0 264 365 29 34 chr1 125610992 125611200 -156582464 - MIR SINE MIR -31 231 25 969 204 25 10 chr1 125613361 125613557 -156580107 + MER58A DNA MER1_type 26 224 0 2222 133 71 8 chr1 125613743 125614096 -156579568 - THE1C LTR MaLR 0 375 1 11219 117 35 3 chr1 125614096 125615627 -156578037 - THE1C-int LTR MaLR 0 1580 1 2372 136 47 8 chr1 125615627 125615988 -156577676 - THE1C LTR MaLR 0 375 1 1336 180 66 8 chr1 125616008 125616264 -156577400 + MLT1C LTR MaLR 195 465 -2 218 326 87 11 chr1 125616962 125617054 -156576610 - L2 LINE L2 -37 3235 3137 3746 168 10 69 chr1 125617363 125617785 -156575879 - L1MB3 LINE L1 -2 6181 5827 3751 117 29 15 chr1 125617785 125618305 -156575359 + MER1A DNA MER1_type 1 527 0 3746 168 10 69 chr1 125618305 125618680 -156574984 - L1MB3 LINE L1 -356 5827 5431 370 277 113 21 chr1 125618680 125618821 -156574843 - MIR SINE MIR -97 165 12 586 248 80 71 chr1 125619900 125620138 -156573526 + MER21B LTR ERV1 384 623 -240 1990 158 45 35 chr1 125620138 125620538 -156573126 + MER77-int LTR ERV1 3739 4142 -49 287 206 48 0 chr1 125620782 125620845 -156572819 + MER77 LTR ERV1 69 134 -471 190 337 31 10 chr1 125621496 125621594 -156572070 + MIR3 SINE MIR 103 202 -6 253 308 128 47 chr1 125621830 125622064 -156571600 + L3b LINE CR1 1129 1381 -202 404 200 16 128 chr1 125622235 125622360 -156571304 - L2 LINE L2 -25 3247 3137 416 300 69 0 chr1 125622475 125622605 -156571059 - MIR SINE MIR -110 152 14 584 258 10 73 chr1 125623507 125623701 -156569963 - MIR SINE MIR -67 141 7 201 313 89 9 chr1 125623699 125623811 -156569853 - MIR3 SINE MIR -54 154 34 * 1413 180 15 80 chr1 125624453 125624561 -156569103 - MER33 DNA MER1_type -2268 317 204 1962 129 0 17 chr1 125624561 125624873 -156568791 - AluSx SINE Alu 0 307 1 1413 180 15 80 chr1 125624873 125625102 -156568562 - MER33 DNA MER1_type -2381 204 1 478 245 116 0 chr1 125626197 125626344 -156567320 - MER5A DNA MER1_type 0 189 26 623 280 28 11 chr1 125626386 125626568 -156567096 - MIR SINE MIR -22 240 56 447 221 0 21 chr1 125627162 125627257 -156566407 - MER82 DNA MER2_type -559 94 2 2456 67 0 3 chr1 125627404 125627703 -156565961 - AluY SINE Alu -13 298 1 3040 162 71 17 chr1 125627746 125628326 -156565338 - L1MC2 LINE L1 0 6624 6014 * 9019 225 53 55 chr1 125628322 125629032 -156564632 - L1MC2 LINE L1 -859 5567 4857 2471 82 3 0 chr1 125629032 125629338 -156564326 - AluY SINE Alu -4 307 1 9019 225 53 55 chr1 125629338 125631507 -156562157 - L1MC2 LINE L1 -1569 4857 2693 1116 198 51 109 chr1 125631515 125631909 -156561755 + MLT1B LTR MaLR 18 388 -2 9052 172 145 40 chr1 125631911 125632451 -156561213 - L1MC2 LINE L1 -3873 2734 2252 439 68 68 14 chr1 125632451 125632524 -156561140 + MADE1 DNA Mariner 4 80 0 9052 172 145 40 chr1 125632524 125632853 -156560811 - L1MC2 LINE L1 -4355 2252 1959 1399 171 25 82 chr1 125632853 125633169 -156560495 - AluSx SINE Alu -4 298 1 9052 172 145 40 chr1 125633169 125633734 -156559930 - L1MC2 LINE L1 -4648 1959 1455 2090 107 4 0 chr1 125633734 125634005 -156559659 - AluSp SINE Alu -13 300 29 9052 172 145 40 chr1 125634005 125634787 -156558877 - L1MC2 LINE L1 -5152 1455 756 2039 141 7 3 chr1 125634787 125635091 -156558573 - AluSx SINE Alu -7 305 1 9052 172 145 40 chr1 125635091 125635302 -156558362 - L1MC2 LINE L1 -5851 756 7 256 223 189 61 chr1 125637471 125637619 -156556045 - MIR3 SINE MIR 0 208 42 1722 148 98 50 chr1 125637928 125638286 -156555378 + THE1C LTR MaLR 1 375 0 293 284 0 0 chr1 125638990 125639057 -156554607 + C-rich Low_complexity Low_complexity 1 67 0 849 60 0 0 chr1 125639159 125639259 -156554405 + L1PA6 LINE L1 6048 6147 -7 308 233 93 54 chr1 125639262 125639391 -156554273 + L1MEc LINE L1 1883 2016 -4380 4421 227 49 85 chr1 125639441 125640736 -156552928 + L1MEc LINE L1 1987 3327 -2888 465 333 0 0 chr1 125640736 125640850 -156552814 - MER81 DNA DNA 0 114 1 4421 227 49 85 chr1 125640850 125641238 -156552426 + L1MEc LINE L1 3327 3727 -2488 1997 116 0 0 chr1 125641238 125641506 -156552158 + AluSq SINE Alu 1 268 -45 4421 227 49 85 chr1 125641506 125642024 -156551640 + L1MEc LINE L1 3727 4193 -2022 637 350 31 7 chr1 125642226 125642515 -156551149 - LTR16A LTR ERVL -76 374 79 4860 116 58 1 chr1 125642759 125643272 -156550392 + L1PB1 LINE L1 5254 5829 -322 375 23 0 0 chr1 125643272 125643316 -156550348 + (CA)n Simple_repeat Simple_repeat 1 44 0 4860 116 58 1 chr1 125643316 125643596 -156550068 + L1PB1 LINE L1 5829 6092 -59 941 315 235 12 chr1 125644615 125645586 -156548078 - L3 LINE CR1 -19 1558 372 293 364 76 0 chr1 125645687 125645805 -156547859 + L2 LINE L2 3146 3272 0 186 298 181 11 chr1 125646038 125646132 -156547532 + MIR SINE MIR 2 111 -151 217 330 52 41 chr1 125646177 125646468 -156547196 - L2 LINE L2 -1459 1855 1562 791 232 62 65 chr1 125646818 125647124 -156546540 - L2 LINE L2 -6 3307 3003 556 232 92 30 chr1 125647126 125647290 -156546374 + MER63A DNA MER1_type 1 174 -36 1476 295 126 13 chr1 125647424 125648210 -156545454 - L2 LINE L2 -567 2747 1873 287 296 46 19 chr1 125648327 125648435 -156545229 + MIR SINE MIR 35 145 -63 181 289 0 0 chr1 125648458 125648510 -156545154 - L2 LINE L2 0 3313 3262 193 267 53 40 chr1 125648628 125648703 -156544961 + L2 LINE L2 3175 3250 -22 26 30 0 0 chr1 125648729 125648762 -156544902 + AT_rich Low_complexity Low_complexity 1 33 0 450 225 117 0 chr1 125648762 125648882 -156544782 + MIR SINE MIR 55 188 -74 372 263 38 15 chr1 125648916 125649049 -156544615 - L1ME4a LINE L1 -19 6102 5967 709 295 50 25 chr1 125649375 125649734 -156543930 + MLT1I LTR MaLR 39 406 -3 241 293 24 12 chr1 125649743 125649825 -156543839 - MIR SINE MIR -155 107 25 21 36 0 0 chr1 125650119 125650147 -156543517 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr1 125651056 125651092 -156542572 + AT_rich Low_complexity Low_complexity 1 36 0 2104 113 14 0 chr1 125651354 125651646 -156542018 + AluY SINE Alu 1 296 -15 279 270 16 0 chr1 125651892 125651955 -156541709 - L2 LINE L2 -3 3269 3206 494 295 58 33 chr1 125651987 125652228 -156541436 + MIR SINE MIR 13 259 -3 222 195 266 44 chr1 125652231 125652328 -156541336 - MIR SINE MIR -63 145 40 203 167 0 0 chr1 125652677 125652713 -156540951 + (CTTA)n Simple_repeat Simple_repeat 2 37 0 1217 219 48 7 chr1 125653370 125653662 -156540002 + L1MC4a LINE L1 7196 7499 -309 1003 179 16 5 chr1 125653659 125653849 -156539815 + L1MD2 LINE L1 5742 5933 -426 * 1219 163 99 0 chr1 125653962 125653996 -156539668 + L1MD2 LINE L1 6102 6131 -228 285 89 0 0 chr1 125653996 125654041 -156539623 + (CA)n Simple_repeat Simple_repeat 2 46 0 1219 163 99 0 chr1 125654041 125654239 -156539425 + L1MD2 LINE L1 6131 6357 -2 1349 204 69 3 chr1 125654255 125654544 -156539120 + L1MD3 LINE L1 7675 7982 -13 214 250 0 0 chr1 125655597 125655653 -156538011 + (TG)n Simple_repeat Simple_repeat 1 56 0 944 141 147 11 chr1 125656389 125656573 -156537091 + MER3 DNA MER1_type 1 209 0 271 157 24 96 chr1 125656587 125656670 -156536994 - MER31B LTR ERV1 0 466 390 276 302 95 0 chr1 125656929 125657055 -156536609 + MIR3 SINE MIR 24 161 -47 975 203 0 0 chr1 125658218 125658395 -156535269 - MER5B DNA MER1_type 0 178 2 453 200 64 71 chr1 125661278 125661418 -156532246 + L2 LINE L2 3174 3312 -1 180 77 0 0 chr1 125661428 125661454 -156532210 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1904 193 34 0 chr1 125662578 125662931 -156530733 - MLT1A1 LTR MaLR 0 365 1 2547 146 25 18 chr1 125663490 125663575 -156530089 + L1PB4 LINE L1 5701 5784 -372 297 0 0 0 chr1 125663575 125663608 -156530056 + (TG)n Simple_repeat Simple_repeat 2 34 0 2547 146 25 18 chr1 125663608 125663962 -156529702 + L1PB4 LINE L1 5784 6143 -13 221 370 82 0 chr1 125664435 125664581 -156529083 - L2 LINE L2 -2 3270 3113 217 214 0 2 chr1 125664994 125665047 -156528617 - MIR SINE MIR -62 146 99 2082 147 0 0 chr1 125665413 125665719 -156527945 + AluJo SINE Alu 1 306 -6 408 223 50 36 chr1 125666150 125666289 -156527375 + MIR SINE MIR 56 196 -66 227 329 71 0 chr1 125666616 125666749 -156526915 + MIR SINE MIR 15 156 -52 521 343 12 25 chr1 125667099 125667344 -156526320 - MIR SINE MIR -20 242 1 216 67 0 0 chr1 125667382 125667412 -156526252 + (T)n Simple_repeat Simple_repeat 1 30 0 511 204 18 44 chr1 125667412 125667525 -156526139 - MLT2C1 LTR ERVL -57 340 231 600 232 18 30 chr1 125669125 125669289 -156524375 + MIR3 SINE MIR 33 194 -14 619 236 60 65 chr1 125669501 125669559 -156524105 - MIR SINE MIR -16 246 189 3888 102 9 0 chr1 125669559 125670101 -156523563 - L1PA11 LINE L1 -2 6172 5626 619 236 60 65 chr1 125670101 125670258 -156523406 - MIR SINE MIR -73 189 32 355 303 209 29 chr1 125670327 125671238 -156522426 - L2 LINE L2 -541 2773 1699 831 142 6 12 chr1 125671251 125671420 -156522244 + CT-rich Low_complexity Low_complexity 2 169 0 792 316 83 48 chr1 125671522 125672491 -156521173 - L2 LINE L2 -1735 1579 578 262 268 71 16 chr1 125672906 125673033 -156520631 - HAL1 LINE L1 -2045 462 329 503 268 52 0 chr1 125673890 125674043 -156519621 + MIR SINE MIR 32 192 -70 310 255 99 6 chr1 125675519 125675689 -156517975 + MIR SINE MIR 40 219 -43 421 286 176 0 chr1 125675920 125676175 -156517489 + MER5C DNA MER1_type 1 300 -24 1832 150 13 29 chr1 125676512 125676819 -156516845 - AluJo SINE Alu -10 302 1 363 280 48 32 chr1 125677096 125677221 -156516443 + L2 LINE L2 3145 3271 -1 295 163 0 20 chr1 125678737 125678786 -156514878 - MER3 DNA MER1_type 0 209 162 283 182 0 0 chr1 125678784 125678828 -156514836 - MER3 DNA MER1_type -164 45 2 * 525 252 16 8 chr1 125679078 125679205 -156514459 - L2 LINE L2 0 3272 3145 294 29 0 0 chr1 125679762 125679797 -156513867 + (TG)n Simple_repeat Simple_repeat 2 36 0 318 304 89 33 chr1 125680578 125680792 -156512872 + MIR SINE MIR 31 256 -6 206 247 26 39 chr1 125682172 125682249 -156511415 + MIR SINE MIR 158 233 -29 364 248 50 25 chr1 125682326 125682447 -156511217 - LTR67 LTR ERVL -5 552 429 711 205 30 12 chr1 125682584 125682886 -156510778 + MLT1A1 LTR MaLR 2 365 0 203 301 14 14 chr1 125683099 125683172 -156510492 + MER5B DNA MER1_type 106 178 0 2113 108 44 0 chr1 125684484 125684781 -156508883 + AluSx SINE Alu 1 310 -2 866 294 70 13 chr1 125684808 125685124 -156508540 - MLT1J LTR MaLR -43 468 135 183 379 0 9 chr1 125685456 125685572 -156508092 + L2 LINE L2 2488 2602 -712 245 365 9 0 chr1 125686084 125686191 -156507473 + L2 LINE L2 2870 2977 -295 183 129 0 0 chr1 125686205 125686236 -156507428 + (TCC)n Simple_repeat Simple_repeat 3 33 0 622 246 40 17 chr1 125686277 125686452 -156507212 - MIR SINE MIR -5 257 79 183 339 0 0 chr1 125686445 125686510 -156507154 + L2 LINE L2 3014 3078 -194 * 247 333 0 0 chr1 125686616 125686688 -156506976 + L2 LINE L2 3194 3265 -7 209 217 0 0 chr1 125686784 125686830 -156506834 + T-rich Low_complexity Low_complexity 1 46 0 938 185 0 0 chr1 125687765 125687927 -156505737 - AluJb SINE Alu -7 305 144 446 309 83 64 chr1 125688177 125689014 -156504650 - L1MC5 LINE L1 -140 7902 7074 2580 217 41 25 chr1 125689074 125689675 -156503989 - MLT1G LTR MaLR -13 577 1 1023 224 30 102 chr1 125689838 125690199 -156503465 - L1MC4 LINE L1 -1002 7009 6625 207 162 0 0 chr1 125690226 125690263 -156503401 + (TG)n Simple_repeat Simple_repeat 2 38 0 24 32 0 0 chr1 125690285 125690316 -156503348 + AT_rich Low_complexity Low_complexity 1 31 0 848 252 49 36 chr1 125690610 125691329 -156502335 - L1MC4a LINE L1 -1764 6044 5288 449 201 19 58 chr1 125691512 125691666 -156501998 - L1ME LINE L1 -399 5722 5575 216 267 17 0 chr1 125692482 125692542 -156501122 - L3 LINE CR1 -205 1372 1312 703 276 162 52 chr1 125692582 125692984 -156500680 - MLT1K LTR MaLR 0 588 143 871 229 84 26 chr1 125693087 125693314 -156500350 + MIR SINE MIR 23 262 0 1433 110 0 0 chr1 125694059 125694250 -156499414 - AluSc SINE Alu -14 295 105 1237 167 5 33 chr1 125694250 125694465 -156499199 - THE1B LTR MaLR -3 361 153 1585 33 0 0 chr1 125694465 125694647 -156499017 - L1PA5 LINE L1 -536 5619 5438 4508 30 0 0 chr1 125694647 125695138 -156498526 + L1PA5 LINE L1 5649 6143 -11 966 132 36 18 chr1 125695147 125695314 -156498350 - THE1B LTR MaLR -193 171 2 925 88 0 0 chr1 125695314 125695427 -156498237 - AluSq/x SINE Alu -198 115 3 361 255 122 3 chr1 125695795 125695934 -156497730 + MLT1G1 LTR MaLR 319 492 -103 27 49 0 0 chr1 125696153 125696194 -156497470 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 125696219 125696241 -156497423 + AT_rich Low_complexity Low_complexity 1 22 0 350 82 0 49 chr1 125696763 125696824 -156496840 + L1PA2 LINE L1 6095 6152 -3 368 313 21 42 chr1 125696966 125697110 -156496554 - MIR SINE MIR -96 166 26 510 282 123 12 chr1 125697708 125697871 -156495793 - MER5A DNA MER1_type 0 189 9 258 234 31 0 chr1 125697897 125697961 -156495703 + MIR SINE MIR 107 172 -90 230 200 133 0 chr1 125698085 125698145 -156495519 - MER91C DNA MER1_type -37 103 36 313 328 16 25 chr1 125698760 125698882 -156494782 + MIR SINE MIR 34 154 -108 501 280 32 0 chr1 125698935 125699060 -156494604 - L2 LINE L2 -5 3267 3139 224 271 71 0 chr1 125700390 125700475 -156493189 - MIR SINE MIR 0 262 172 480 246 251 6 chr1 125700498 125700681 -156492983 - MIR SINE MIR -24 238 11 661 277 129 53 chr1 125700740 125701085 -156492579 + L2 LINE L2 2906 3284 -29 2515 118 8 8 chr1 125701085 125701440 -156492224 - THE1A LTR MaLR 0 355 1 661 277 129 53 chr1 125701440 125701473 -156492191 + L2 LINE L2 3284 3313 0 279 210 16 16 chr1 125701596 125701658 -156492006 - MIR SINE MIR -94 168 107 594 350 31 0 chr1 125703280 125703474 -156490190 + MIR SINE MIR 13 212 -50 205 326 31 62 chr1 125703789 125703918 -156489746 - L2 LINE L2 -17 3296 3172 260 111 22 0 chr1 125704110 125704155 -156489509 + GA-rich Low_complexity Low_complexity 2 47 0 1599 164 133 27 chr1 125704601 125704931 -156488733 + MLT1A1 LTR MaLR 1 365 0 233 279 74 82 chr1 125705022 125705144 -156488520 + MLT1L LTR MaLR 120 240 -375 427 249 103 18 chr1 125705214 125705379 -156488285 + MLT1L LTR MaLR 365 543 -72 680 191 148 65 chr1 125705528 125705805 -156487859 - MLT1J1 LTR MaLR -146 300 1 209 271 59 0 chr1 125705950 125706035 -156487629 - L2 LINE L2 -1094 2220 2131 657 305 28 0 chr1 125706951 125707164 -156486500 - MIR SINE MIR 0 262 44 210 331 41 25 chr1 125708500 125708621 -156485043 + MIR3 SINE MIR 10 132 -76 2477 209 11 24 chr1 125710641 125711177 -156482487 + L1MD1 LINE L1 17 545 -5995 7603 224 25 21 chr1 125711179 125714363 -156479301 + L1MD1 LINE L1 3415 6611 -25 350 319 6 57 chr1 125714576 125714733 -156478931 + L2 LINE L2 3117 3265 -7 2496 35 0 3 chr1 125715311 125715597 -156478067 - L1PA4 LINE L1 -3 6152 5868 35 41 0 0 chr1 125715860 125715909 -156477755 + AT_rich Low_complexity Low_complexity 1 49 0 194 262 0 0 chr1 125716089 125716131 -156477533 + MIR SINE MIR 221 262 0 2559 167 43 49 chr1 125716171 125716210 -156477454 - L1MB7 LINE L1 -20 6164 6126 4034 223 77 25 chr1 125716210 125717820 -156475844 - L1MC4 LINE L1 -743 5403 4428 198 0 0 0 chr1 125718564 125718586 -156475078 + (TA)n Simple_repeat Simple_repeat 2 23 0 207 186 0 0 chr1 125718588 125718631 -156475033 + (CA)n Simple_repeat Simple_repeat 1 43 0 187 298 64 0 chr1 125718998 125719068 -156474596 - MIR SINE MIR -42 166 95 2341 85 0 0 chr1 125719192 125719497 -156474167 + AluY SINE Alu 1 305 -6 258 365 44 36 chr1 125719498 125719635 -156474029 + L2 LINE L2 2707 2844 -470 24 32 0 0 chr1 125719716 125719747 -156473917 + AT_rich Low_complexity Low_complexity 1 31 0 1811 178 0 3 chr1 125719794 125720115 -156473549 + L1P LINE L1 4899 5218 -928 1995 116 3 7 chr1 125720131 125720415 -156473249 - AluSx SINE Alu -29 283 1 216 344 184 0 chr1 125720425 125720550 -156473114 - MIR3 SINE MIR -25 183 36 399 347 9 68 chr1 125720722 125720944 -156472720 - MIR SINE MIR -25 237 29 352 245 0 69 chr1 125721041 125721143 -156472521 + MIR SINE MIR 162 256 -6 499 152 0 19 chr1 125721326 125721431 -156472233 + CT-rich Low_complexity Low_complexity 1 103 0 197 107 0 0 chr1 125721692 125721720 -156471944 + MIR SINE MIR 120 147 -61 502 311 55 16 chr1 125722371 125722554 -156471110 - MIR SINE MIR -53 209 20 2064 217 43 27 chr1 125722566 125723089 -156470575 - MLT1F1 LTR MaLR -2 565 34 215 204 74 9 chr1 125723340 125723448 -156470216 + (TA)n Simple_repeat Simple_repeat 2 116 0 1139 191 68 13 chr1 125723965 125724200 -156469464 + MIR SINE MIR 1 248 -14 252 263 229 0 chr1 125724281 125724340 -156469324 + MIR SINE MIR 118 162 -100 192 97 0 0 chr1 125724340 125724371 -156469293 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 252 263 229 0 chr1 125724371 125724429 -156469235 + MIR SINE MIR 162 262 0 991 219 15 0 chr1 125726424 125726625 -156467039 + MER63A DNA MER1_type 1 204 -6 14902 129 67 1 chr1 125727001 125729269 -156464395 + Tigger1 DNA MER2_type 2 2418 0 367 326 49 0 chr1 125731039 125731183 -156462481 + MIR SINE MIR 69 219 -43 205 298 105 32 chr1 125732184 125732308 -156461356 - L2 LINE L2 0 3272 3140 1674 175 3 21 chr1 125733489 125733780 -156459884 - AluJb SINE Alu -24 288 3 242 269 0 0 chr1 125734253 125734305 -156459359 + L2 LINE L2 3262 3313 0 2451 136 5 14 chr1 125734417 125734785 -156458879 - MLT1A1 LTR MaLR 0 365 1 485 211 95 0 chr1 125735418 125735513 -156458151 + L2 LINE L2 3208 3311 -2 186 356 55 0 chr1 125735818 125735891 -156457773 + L2 LINE L2 2974 3050 -222 297 306 102 19 chr1 125735984 125736092 -156457572 + L2 LINE L2 3141 3257 -15 189 107 0 0 chr1 125736096 125736124 -156457540 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 2961 223 59 70 chr1 125736657 125737791 -156455873 - L1MC5 LINE L1 -215 7746 6625 2647 114 8 0 chr1 125737815 125738167 -156455497 + THE1A LTR MaLR 1 355 0 12089 101 10 3 chr1 125738167 125739736 -156453928 + THE1A-int LTR MaLR 1 1580 0 2822 90 3 3 chr1 125739736 125740091 -156453573 + THE1A LTR MaLR 1 355 0 1273 90 0 28 chr1 125740290 125740468 -156453196 - AluY SINE Alu 0 311 139 23 54 0 0 chr1 125740591 125740628 -156453036 + AT_rich Low_complexity Low_complexity 1 37 0 535 184 21 64 chr1 125740804 125740945 -156452719 - L1MC5 LINE L1 -1889 5919 5785 737 239 130 1 chr1 125740946 125741224 -156452440 - L1MC5 LINE L1 -2237 5571 5264 26 0 0 0 chr1 125741291 125741317 -156452347 + AT_rich Low_complexity Low_complexity 1 26 0 663 298 69 17 chr1 125741464 125742059 -156451605 - L1MC5 LINE L1 -1187 4959 4309 279 0 0 0 chr1 125742059 125742090 -156451574 + (TA)n Simple_repeat Simple_repeat 1 31 0 663 298 69 17 chr1 125742090 125742303 -156451361 - L1MC5 LINE L1 -1837 4309 4108 254 241 35 23 chr1 125742575 125742662 -156451002 + MLT2F LTR ERVL 576 663 0 2623 214 9 30 chr1 125742707 125743271 -156450393 - MLT2B3 LTR ERVL -2 552 1 8330 148 11 4 chr1 125743278 125744678 -156448986 - ERVL-B3 LTR ERVL -14 5750 4340 466 284 27 9 chr1 125744686 125744911 -156448753 + L1MEc LINE L1 715 943 -5453 34924 91 14 13 chr1 125745052 125751077 -156442587 + L1PA6 LINE L1 11 6045 -109 853 222 32 11 chr1 125801354 125801539 -156392125 - MER5A DNA MER1_type 0 189 1 301 316 27 108 chr1 125802453 125802788 -156390876 + L2 LINE L2 2965 3272 0 255 296 92 0 chr1 125802860 125802958 -156390706 - MIR3 SINE MIR -1 207 101 833 244 207 26 chr1 125803685 125804179 -156389485 + L2 LINE L2 2719 3311 -2 303 286 73 28 chr1 125805364 125805542 -156388122 + MIR SINE MIR 2 187 -75 294 280 32 72 chr1 125806004 125806101 -156387563 + MIR3 SINE MIR 62 154 -54 1058 182 11 11 chr1 125806101 125806288 -156387376 + MER5A DNA MER1_type 3 189 0 294 280 32 72 chr1 125806288 125806315 -156387349 + MIR3 SINE MIR 154 181 -27 24 0 0 0 chr1 125807225 125807249 -156386415 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr1 125807416 125807441 -156386223 + AT_rich Low_complexity Low_complexity 1 25 0 2298 92 7 3 chr1 125807924 125808229 -156385435 + AluSc SINE Alu 1 306 -3 228 296 25 0 chr1 125809814 125809895 -156383769 - L2 LINE L2 -1 3312 3230 203 374 99 8 chr1 125810192 125810323 -156383341 - MIR SINE MIR -68 194 52 180 200 0 0 chr1 125810387 125810432 -156383232 + (CA)n Simple_repeat Simple_repeat 2 46 0 220 200 0 0 chr1 125810887 125810927 -156382737 + GA-rich Low_complexity Low_complexity 4 43 0 490 230 18 9 chr1 125811588 125811701 -156381963 - MER94 DNA DNA 0 134 21 304 256 49 18 chr1 125815667 125815808 -156377856 + MIR SINE MIR 30 175 -64 680 23 12 0 chr1 125816035 125816121 -156377543 + (TAGA)n Simple_repeat Simple_repeat 3 89 0 482 225 21 94 chr1 125816272 125816463 -156377201 + MIR SINE MIR 80 256 -6 279 267 0 23 chr1 125816591 125816677 -156376987 - MIR SINE MIR 0 262 179 377 261 42 35 chr1 125817296 125817438 -156376226 + MIR SINE MIR 40 182 -80 227 259 25 25 chr1 125817482 125817563 -156376101 + (CATA)n Simple_repeat Simple_repeat 4 84 0 180 152 0 0 chr1 125817569 125817602 -156376062 + (TG)n Simple_repeat Simple_repeat 1 33 0 198 205 26 0 chr1 125817759 125817798 -156375866 - L2 LINE L2 -216 3056 3017 227 315 79 24 chr1 125818947 125819074 -156374590 - L2 LINE L2 -2 3270 3137 369 268 0 10 chr1 125819359 125819456 -156374208 - MER5A DNA MER1_type -84 105 10 201 139 0 0 chr1 125820769 125820812 -156372852 + (T)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr1 125821635 125821658 -156372006 + AT_rich Low_complexity Low_complexity 1 23 0 436 241 88 15 chr1 125821762 125821899 -156371765 + MIR SINE MIR 3 149 -113 1695 259 32 20 chr1 125822131 125822632 -156371032 - L3 LINE CR1 -169 1408 902 256 211 88 0 chr1 125822766 125822823 -156370841 + L2 LINE L2 3170 3231 -41 219 333 38 33 chr1 125823736 125823946 -156369718 - L2 LINE L2 -235 3037 2827 * 400 333 77 27 chr1 125823930 125824034 -156369630 - L3 LINE CR1 -942 635 538 2179 126 3 0 chr1 125824034 125824328 -156369336 - AluSx SINE Alu -17 295 1 400 333 77 27 chr1 125824328 125824445 -156369219 - L3 LINE CR1 -1039 538 403 366 316 111 62 chr1 125824875 125825261 -156368403 - L2 LINE L2 -3 3269 2865 250 348 78 9 chr1 125826444 125826559 -156367105 + L2 LINE L2 3147 3269 -3 1947 197 11 6 chr1 125826796 125827151 -156366513 + MLT1A1 LTR MaLR 7 363 -2 414 103 10 124 chr1 125827770 125827867 -156365797 + L1MB3 LINE L1 6090 6175 -8 234 298 51 67 chr1 125828836 125828884 -156364780 + L2 LINE L2 341 388 -2926 1917 204 11 3 chr1 125828884 125829246 -156364418 - MLT1A1 LTR MaLR 0 365 1 234 298 51 67 chr1 125829246 125829375 -156364289 + L2 LINE L2 388 515 -2799 233 361 52 0 chr1 125829502 125829657 -156364007 + L2 LINE L2 2500 2662 -652 211 286 75 22 chr1 125829734 125829933 -156363731 - MIR SINE MIR -7 255 6 597 259 22 49 chr1 125829939 125830124 -156363540 + MLT1I LTR MaLR 39 218 -191 253 322 11 22 chr1 125830430 125830520 -156363144 + MIR3 SINE MIR 72 160 -48 399 213 98 46 chr1 125830654 125830828 -156362836 + MIR SINE MIR 21 203 -59 416 252 13 24 chr1 125830871 125831017 -156362647 + MIR SINE MIR 45 186 -60 292 288 137 59 chr1 125832597 125832750 -156360914 - MLT1I LTR MaLR 0 409 245 210 37 0 0 chr1 125832854 125832881 -156360783 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 243 309 32 41 chr1 125833083 125833206 -156360458 - MIR SINE MIR -110 152 31 369 244 12 0 chr1 125833989 125834075 -156359589 - MIR SINE MIR -128 134 48 223 250 135 77 chr1 125834446 125834602 -156359062 - L2 LINE L2 -707 2607 2443 2155 117 0 3 chr1 125834675 125834973 -156358691 - AluSg SINE Alu -13 297 1 1490 294 96 64 chr1 125837279 125838197 -156355467 - L3 LINE CR1 -1 1576 606 1130 225 11 15 chr1 125838197 125838459 -156355205 - MIR SINE MIR 0 262 2 1490 294 96 64 chr1 125838459 125838778 -156354886 - L3 LINE CR1 -971 606 299 804 117 124 7 chr1 125838948 125839109 -156354555 - L1PA10 LINE L1 0 6168 6007 416 167 133 25 chr1 125839187 125839307 -156354357 + MER103 DNA DNA 32 164 -2 216 143 0 0 chr1 125839316 125839358 -156354306 + (TC)n Simple_repeat Simple_repeat 1 42 0 279 0 0 0 chr1 125839367 125839398 -156354266 + (CA)n Simple_repeat Simple_repeat 1 31 0 241 387 44 7 chr1 125839456 125839593 -156354071 - L3 LINE CR1 -1269 308 167 1979 153 60 156 chr1 125839856 125840478 -156353186 - LTR8A LTR ERV1 -5 722 161 260 161 81 48 chr1 125840446 125840508 -156353156 - MER87 LTR ERV1 -357 184 121 * 2563 133 10 10 chr1 125840902 125841292 -156352372 + MLT1B LTR MaLR 1 390 0 451 243 153 0 chr1 125841311 125841422 -156352242 + MER5B DNA MER1_type 2 129 -49 726 316 34 40 chr1 125841610 125842166 -156351498 - HAL1b LINE L1 -659 689 137 389 250 145 88 chr1 125842220 125842516 -156351148 + MLT1L LTR MaLR 10 322 -293 483 327 26 5 chr1 125842523 125842692 -156350972 + MLT1L LTR MaLR 293 563 -52 615 202 48 0 chr1 125842710 125842829 -156350835 - MER58B DNA MER1_type -38 303 179 2148 143 25 25 chr1 125842829 125843185 -156350479 - MLT1A1 LTR MaLR 0 365 10 241 294 0 0 chr1 125843208 125843259 -156350405 - MER58B DNA MER1_type -290 51 1 2480 4 0 4 chr1 125844066 125844337 -156349327 - AluYa5 SINE Alu 0 311 42 1935 194 55 0 chr1 125844365 125844711 -156348953 - MLT1A1 LTR MaLR 0 365 1 1505 285 86 13 chr1 125844845 125846271 -156347393 - L1ME3A LINE L1 -224 5929 4396 181 283 0 0 chr1 125846432 125846478 -156347186 - L2 LINE L2 -585 2729 2684 5526 142 55 15 chr1 125846775 125846923 -156346741 - L1MA9 LINE L1 0 6312 6171 201 94 0 0 chr1 125846923 125846955 -156346709 + (TG)n Simple_repeat Simple_repeat 1 32 0 5526 142 55 15 chr1 125846955 125847286 -156346378 - L1MA9 LINE L1 -141 6171 5855 2432 77 0 32 chr1 125847286 125847598 -156346066 - AluSc SINE Alu -7 302 1 5526 142 55 15 chr1 125847598 125847624 -156346040 - L1MA9 LINE L1 -457 5855 5831 279 0 0 0 chr1 125847624 125847655 -156346009 + (TG)n Simple_repeat Simple_repeat 1 31 0 5526 142 55 15 chr1 125847655 125848130 -156345534 - L1MA9 LINE L1 -481 5831 5291 316 241 43 97 chr1 125848220 125848498 -156345166 - L1ME3A LINE L1 -1801 4328 4066 560 276 141 32 chr1 125848512 125849066 -156344598 - L1ME3A LINE L1 -2610 3519 2906 261 277 64 74 chr1 125849071 125849273 -156344391 - L1ME3A LINE L1 -9 6161 5962 2496 221 71 53 chr1 125849369 125850254 -156343410 - L1MC5 LINE L1 -425 7536 6636 669 324 113 3 chr1 125850638 125850931 -156342733 + LTR16A LTR ERVL 126 450 0 3264 283 75 51 chr1 125850931 125852326 -156341338 + HERV16 LTR ERVL 1 1429 -3567 571 290 60 58 chr1 125852373 125852911 -156340753 - HAL1b LINE L1 -744 604 66 396 246 97 9 chr1 125852973 125853087 -156340577 - L1MC4 LINE L1 -143 7899 7776 274 80 20 20 chr1 125853087 125853137 -156340527 + LTR54 LTR ERV1 461 510 0 501 282 100 61 chr1 125853138 125854493 -156339171 - L1MEd LINE L1 -4052 2258 802 429 20 0 0 chr1 125854532 125854582 -156339082 + (TG)n Simple_repeat Simple_repeat 2 51 0 364 330 44 61 chr1 125854593 125854935 -156338729 - L1MEd LINE L1 -5493 626 291 302 276 112 9 chr1 125855006 125855122 -156338542 - L1MEd LINE L1 -5955 164 37 1169 318 75 47 chr1 125857134 125857977 -156335687 + L3 LINE CR1 678 1543 -34 330 226 90 38 chr1 125858315 125858448 -156335216 - MIR SINE MIR -52 210 71 231 281 24 24 chr1 125858511 125858593 -156335071 - L3 LINE CR1 -1 1576 1495 209 234 21 0 chr1 125859246 125859293 -156334371 + GA-rich Low_complexity Low_complexity 3 50 0 268 396 58 14 chr1 125859554 125859693 -156333971 + L2 LINE L2 3125 3269 -3 374 220 35 121 chr1 125859803 125859944 -156333720 + MIR3 SINE MIR 52 180 -28 1748 170 110 43 chr1 125860721 125861190 -156332474 + LTR10A LTR ERV1 1 548 -61 267 143 0 41 chr1 125861276 125861325 -156332339 - FLAM_A SINE Alu -75 58 12 339 25 0 0 chr1 125862000 125862040 -156331624 + (CA)n Simple_repeat Simple_repeat 1 40 0 1010 196 45 40 chr1 125863094 125863293 -156330371 + AluJo SINE Alu 1 200 -112 208 244 61 49 chr1 125864236 125864318 -156329346 - MIR SINE MIR -56 206 124 696 275 44 35 chr1 125865016 125865245 -156328419 + MIR SINE MIR 11 241 -21 848 191 0 0 chr1 125865264 125865395 -156328269 - FLAM_A SINE Alu -2 131 1 448 296 43 21 chr1 125865759 125865945 -156327719 + MIR3 SINE MIR 19 208 0 365 237 153 51 chr1 125866739 125866966 -156326698 + MIR SINE MIR 12 262 0 21 57 0 0 chr1 125867124 125867159 -156326505 + AT_rich Low_complexity Low_complexity 1 35 0 188 221 147 29 chr1 125868361 125868429 -156325235 + L2 LINE L2 2426 2501 -813 2481 161 74 81 chr1 125868619 125869161 -156324503 - MLT2B3 LTR ERVL 0 554 17 203 333 98 0 chr1 125869198 125869300 -156324364 + L2 LINE L2 2957 3068 -204 638 291 38 33 chr1 125869637 125869850 -156323814 + L3 LINE CR1 348 561 -1016 208 256 23 116 chr1 125869946 125870075 -156323589 + L3 LINE CR1 840 956 -621 204 289 0 0 chr1 125870077 125870122 -156323542 + polypurine Low_complexity Low_complexity 4 48 0 511 204 134 14 chr1 125870224 125870366 -156323298 + MER103 DNA DNA 8 166 0 585 322 14 76 chr1 125870462 125870816 -156322848 + L3 LINE CR1 1040 1371 -206 418 223 32 83 chr1 125871440 125871597 -156322067 - MIR3 SINE MIR -46 162 14 252 0 0 0 chr1 125872806 125872834 -156320830 + (T)n Simple_repeat Simple_repeat 1 28 0 312 120 0 0 chr1 125873136 125873186 -156320478 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 381 43 0 0 chr1 125874124 125874171 -156319493 + (TG)n Simple_repeat Simple_repeat 2 48 0 261 308 62 53 chr1 125875738 125875870 -156317794 + MIR SINE MIR 20 168 -56 2151 135 3 3 chr1 125876316 125876627 -156317037 - AluSx SINE Alu -1 311 1 204 182 0 0 chr1 125877637 125877681 -156315983 + (CA)n Simple_repeat Simple_repeat 1 44 0 273 283 20 96 chr1 125879316 125879530 -156314134 - MIR SINE MIR -43 219 25 542 245 7 40 chr1 125879628 125879779 -156313885 + MER5A DNA MER1_type 40 185 -4 651 287 29 6 chr1 125881958 125882132 -156311532 + MIR3 SINE MIR 17 194 -14 1156 207 21 24 chr1 125882781 125883071 -156310593 - MER33 DNA MER1_type -1 323 35 254 200 0 0 chr1 125883271 125883316 -156310348 - MLT1I LTR MaLR -267 142 98 1019 259 101 11 chr1 125883444 125883880 -156309784 - L1ME4a LINE L1 -30 6091 5617 666 261 52 65 chr1 125883914 125884205 -156309459 - L2 LINE L2 -5 3308 3022 232 254 42 28 chr1 125884885 125884956 -156308708 + MIR SINE MIR 42 113 -95 635 285 175 56 chr1 125885079 125885995 -156307669 - L2 LINE L2 -15 3298 2249 230 304 122 20 chr1 125886152 125886300 -156307364 + MIR SINE MIR 92 254 -8 2093 143 3 0 chr1 125886308 125886616 -156307048 - AluSg SINE Alu -1 309 1 204 149 0 0 chr1 125886935 125886982 -156306682 + (T)n Simple_repeat Simple_repeat 1 47 0 206 67 0 0 chr1 125887914 125887944 -156305720 + L2 LINE L2 3284 3313 0 3149 241 68 37 chr1 125888621 125889667 -156303997 - HAL1 LINE L1 -5 2502 1425 423 241 105 56 chr1 125889718 125889924 -156303740 + MLT1J2 LTR MaLR 73 353 -97 1713 121 0 4 chr1 125889924 125890155 -156303509 - MER30 DNA MER1_type 0 230 1 423 241 105 56 chr1 125890155 125890259 -156303405 + MLT1J2 LTR MaLR 353 450 0 1189 218 100 9 chr1 125890259 125890598 -156303066 - HAL1 LINE L1 -1085 1422 1053 255 300 58 8 chr1 125890763 125890883 -156302781 - L1ME LINE L1 -314 5925 5800 188 250 0 0 chr1 125890897 125890937 -156302727 - MIR SINE MIR -61 147 108 202 301 186 0 chr1 125890944 125891057 -156302607 + L2 LINE L2 3180 3313 0 539 209 36 98 chr1 125891221 125891300 -156302364 - L1MEc LINE L1 -3596 2619 2537 2383 77 0 6 chr1 125891300 125891612 -156302052 + AluY SINE Alu 1 310 -1 539 209 36 98 chr1 125891612 125891757 -156301907 - L1MEc LINE L1 -3678 2537 2409 * 3466 236 42 31 chr1 125891744 125892428 -156301236 - L1ME LINE L1 -775 5440 4738 2566 28 0 53 chr1 125892428 125892751 -156300913 + AluY SINE Alu 1 306 -5 3466 236 42 31 chr1 125892751 125893191 -156300473 - L1ME LINE L1 -1477 4738 4304 24 32 0 0 chr1 125893220 125893251 -156300413 + AT_rich Low_complexity Low_complexity 1 31 0 583 131 0 0 chr1 125893421 125893505 -156300159 - L1MC/D LINE L1 -754 5605 5522 647 242 71 0 chr1 125893506 125893704 -156299960 - L1ME LINE L1 -3986 2410 2199 1668 279 50 61 chr1 125893713 125894907 -156298757 - L1MEc LINE L1 -5033 1185 42 372 251 108 37 chr1 125894908 125895147 -156298517 - L1MDa LINE L1 -4459 1967 1746 225 0 0 0 chr1 125895147 125895172 -156298492 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 372 251 108 37 chr1 125895172 125895200 -156298464 - L1MDa LINE L1 -4680 1746 1734 423 79 191 0 chr1 125895200 125895263 -156298401 + MADE1 DNA Mariner 5 79 -1 372 251 108 37 chr1 125895263 125895296 -156298368 - L1MDa LINE L1 -4692 1734 1705 31 44 0 0 chr1 125895319 125895364 -156298300 + AT_rich Low_complexity Low_complexity 1 45 0 9692 174 18 12 chr1 125895558 125898231 -156295433 - L1PB3 LINE L1 -101 6053 3371 340 281 12 0 chr1 125898332 125898414 -156295250 + L1ME LINE L1 10 92 -5978 202 182 0 0 chr1 125899169 125899202 -156294462 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 254 99 0 chr1 125899207 125899278 -156294386 - MIR SINE MIR -70 192 115 250 286 162 0 chr1 125899278 125899383 -156294281 - L2 LINE L2 -9 3263 3142 355 258 21 0 chr1 125899401 125899494 -156294170 - MIR3 SINE MIR -105 103 9 553 242 109 6 chr1 125899939 125900104 -156293560 + MIR SINE MIR 37 218 -44 522 337 120 75 chr1 125900366 125900824 -156292840 - L2 LINE L2 -8 3264 2786 266 298 90 11 chr1 125901145 125901323 -156292341 - L2 LINE L2 -217 3055 2864 1099 224 144 3 chr1 125901797 125902096 -156291568 - MER58B DNA MER1_type 0 341 1 21 36 0 0 chr1 125902343 125902371 -156291293 + AT_rich Low_complexity Low_complexity 1 28 0 2021 130 0 20 chr1 125902446 125902765 -156290899 + AluSx SINE Alu 1 312 0 209 254 0 18 chr1 125904101 125904156 -156289508 - L2 LINE L2 -1 3271 3218 363 269 173 35 chr1 125904181 125904514 -156289150 + L2 LINE L2 2730 3140 -173 351 308 33 8 chr1 125905143 125905263 -156288401 + L2 LINE L2 3182 3304 -9 189 311 33 33 chr1 125905398 125905459 -156288205 - MIR SINE MIR -187 75 15 297 226 107 0 chr1 125905470 125905554 -156288110 + MIR3 SINE MIR 102 194 -14 2074 105 117 20 chr1 125905633 125905975 -156287689 - THE1C LTR MaLR 0 375 1 1727 150 65 7 chr1 125906313 125906619 -156287045 - MER33 DNA MER1_type 0 324 1 194 279 12 0 chr1 125906650 125906736 -156286928 + (CA)n Simple_repeat Simple_repeat 2 88 0 207 369 78 0 chr1 125908441 125908582 -156285082 - MIR SINE MIR -56 206 55 28 29 0 0 chr1 125908759 125908794 -156284870 + AT_rich Low_complexity Low_complexity 1 35 0 236 30 30 0 chr1 125908800 125908833 -156284831 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 984 117 29 0 chr1 125908851 125908988 -156284676 - AluJb SINE Alu -171 141 1 194 91 0 30 chr1 125909096 125909129 -156284535 - L2 LINE L2 -9 3304 3273 1169 229 40 0 chr1 125910087 125910336 -156283328 - MIR SINE MIR 0 262 4 531 272 141 60 chr1 125910625 125911263 -156282401 - L2 LINE L2 0 3313 2502 493 221 176 0 chr1 125912001 125912132 -156281532 - MER5A DNA MER1_type 0 189 36 365 366 58 11 chr1 125912441 125912632 -156281032 - MIR SINE MIR -61 201 2 251 142 71 62 chr1 125912769 125912882 -156280782 + (TATAG)n Simple_repeat Simple_repeat 2 115 0 406 299 83 97 chr1 125915002 125915437 -156278227 - L2 LINE L2 -25 3247 2819 284 243 70 0 chr1 125915545 125915627 -156278037 - L2 LINE L2 -260 3012 2925 340 263 120 40 chr1 125915992 125916177 -156277487 - MIR SINE MIR -21 241 44 228 172 69 46 chr1 125916287 125916461 -156277203 + (TTAA)n Simple_repeat Simple_repeat 3 180 0 62 52 0 0 chr1 125916462 125916559 -156277105 + AT_rich Low_complexity Low_complexity 1 97 0 353 304 35 26 chr1 125916752 125916867 -156276797 - MIR SINE MIR -114 148 33 428 300 113 7 chr1 125917433 125917583 -156276081 + MIR3 SINE MIR 19 184 -24 281 257 179 50 chr1 125917994 125918134 -156275530 + MIR SINE MIR 1 158 -104 254 298 58 10 chr1 125918592 125918696 -156274968 + L2 LINE L2 3201 3309 -4 243 88 0 0 chr1 125920379 125920413 -156273251 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 1460 152 156 8 chr1 125920469 125920732 -156272932 - AluJo SINE Alu 0 302 1 424 238 119 24 chr1 125921077 125921245 -156272419 - MIR SINE MIR -72 190 7 327 49 0 0 chr1 125921845 125921886 -156271778 + (TC)n Simple_repeat Simple_repeat 2 42 0 461 241 118 22 chr1 125921988 125922195 -156271469 - MIR SINE MIR 0 262 32 1648 187 149 44 chr1 125923514 125923969 -156269695 + MLT1D LTR MaLR 1 503 -2 287 274 36 12 chr1 125924754 125924838 -156268826 - L2 LINE L2 -25 3288 3203 190 79 26 26 chr1 125925409 125925447 -156268217 + (GGA)n Simple_repeat Simple_repeat 3 40 0 222 236 0 28 chr1 125925923 125925995 -156267669 + GA-rich Low_complexity Low_complexity 2 71 0 201 74 0 0 chr1 125926163 125926190 -156267474 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1401 164 33 4 chr1 125926354 125926628 -156267036 - L1MC3 LINE L1 0 7785 7504 1759 262 51 49 chr1 125927174 125927766 -156265898 + MLT1E LTR MaLR 1 593 0 194 344 32 11 chr1 125928209 125928302 -156265362 - L2 LINE L2 -1897 1417 1323 237 373 93 21 chr1 125928399 125928635 -156265029 - L2 LINE L2 -2838 476 224 497 310 76 13 chr1 125929079 125929237 -156264427 + MIR3 SINE MIR 27 194 -14 333 0 0 0 chr1 125929309 125929346 -156264318 + (A)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr1 125930124 125930153 -156263511 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr1 125930205 125930247 -156263417 + AT_rich Low_complexity Low_complexity 1 42 0 269 328 81 53 chr1 125930255 125930729 -156262935 - L2 LINE L2 -189 3083 2597 259 197 13 66 chr1 125930819 125930895 -156262769 + L2 LINE L2 3181 3252 -20 240 301 49 41 chr1 125931159 125931282 -156262382 - L2 LINE L2 -928 2386 2263 537 256 24 16 chr1 125931758 125931883 -156261781 + MIR SINE MIR 20 145 -63 297 51 0 0 chr1 125931914 125931953 -156261711 + (TG)n Simple_repeat Simple_repeat 2 40 0 818 287 67 25 chr1 125932203 125932670 -156260994 + MLT1E-int LTR MaLR 2 601 -770 365 335 27 16 chr1 125932911 125933096 -156260568 + MLT1E-int LTR MaLR 692 878 -493 809 274 48 83 chr1 125933304 125933655 -156260009 + MLT1E-int LTR MaLR 1033 1371 0 1687 235 121 50 chr1 125933655 125934158 -156259506 + MLT1F LTR MaLR 1 539 -3 3942 213 47 28 chr1 125934164 125935983 -156257681 + L1ME2 LINE L1 4301 6161 -3 1589 293 43 25 chr1 125935990 125936222 -156257442 + L1ME3A LINE L1 4381 4607 -1539 2126 98 49 0 chr1 125936222 125936507 -156257157 - AluSq SINE Alu -14 299 1 1589 293 43 25 chr1 125936507 125937045 -156256619 + L1ME3A LINE L1 4607 5165 -981 2335 243 79 38 chr1 125937104 125937161 -156256503 + L1ME3A LINE L1 5301 5354 -816 1724 203 13 58 chr1 125937161 125937541 -156256123 + MLT1A1 LTR MaLR 3 365 0 2335 243 79 38 chr1 125937541 125938319 -156255345 + L1ME3A LINE L1 5354 6170 0 492 120 30 0 chr1 125938485 125938585 -156255079 + CT-rich Low_complexity Low_complexity 5 107 0 287 313 151 26 chr1 125938687 125938879 -156254785 + MIR SINE MIR 33 248 -14 388 211 56 0 chr1 125939844 125939934 -156253730 + MER69 DNA AcHobo 2431 2525 -1 559 271 115 53 chr1 125940450 125940790 -156252874 + L1MC4a LINE L1 5545 5905 -1903 270 270 26 26 chr1 125940983 125941098 -156252566 + L1MC5 LINE L1 7811 7925 -36 1421 283 49 7 chr1 125941295 125941748 -156251916 + LTR33 LTR ERVL 43 514 -7 456 113 12 25 chr1 125941948 125942028 -156251636 + MER116 DNA Mariner 2 80 0 209 275 110 9 chr1 125942305 125942414 -156251250 - MIR3 SINE MIR -8 200 81 2162 125 0 16 chr1 125943653 125943964 -156249700 + AluSg SINE Alu 3 308 -2 2326 138 0 6 chr1 125943968 125944331 -156249333 - L1P LINE L1 -1822 4324 3964 6316 101 9 2 chr1 125944335 125945268 -156248396 + L1PA13 LINE L1 5205 6143 -20 308 245 32 32 chr1 125945893 125945987 -156247677 - MIR3 SINE MIR -27 181 88 215 347 16 16 chr1 125946496 125946620 -156247044 - L2 LINE L2 -939 2375 2252 36407 34 2 0 chr1 125947023 125952228 -156241436 - L1PA2 LINE L1 -4 6151 1063 43681 33 23 2 chr1 125952328 125957921 -156235743 - L1P1 LINE L1 -429 5726 13 5541 173 22 16 chr1 125957924 125958163 -156235501 - L1PB4 LINE L1 -121 6035 5799 453 36 0 0 chr1 125958163 125958218 -156235446 + (TA)n Simple_repeat Simple_repeat 1 55 0 5541 173 22 16 chr1 125958218 125959786 -156233878 - L1PB4 LINE L1 -357 5799 4215 355 259 84 36 chr1 125962214 125962380 -156231284 + MIR SINE MIR 89 262 0 445 326 0 0 chr1 125963179 125963323 -156230341 - L2 LINE L2 0 3313 3170 403 314 78 13 chr1 125963629 125963782 -156229882 + MIR3 SINE MIR 5 167 -41 202 363 63 63 chr1 125964114 125964461 -156229203 + L2 LINE L2 2872 3218 -54 361 248 95 9 chr1 125964778 125964883 -156228781 - L3 LINE CR1 -1 1576 1463 306 198 22 22 chr1 125965430 125965521 -156228143 - L3 LINE CR1 -330 1247 1157 180 0 0 0 chr1 125966158 125966178 -156227486 + (AGGTG)n Simple_repeat Simple_repeat 3 22 0 246 361 74 16 chr1 125966462 125966584 -156227080 - L2 LINE L2 -2 3270 3142 223 296 117 69 chr1 125967022 125967560 -156226104 - L2 LINE L2 -785 2529 1966 273 322 22 0 chr1 125967752 125967842 -156225822 + MIR SINE MIR 153 244 -18 319 252 35 17 chr1 125968072 125968187 -156225477 - MIR SINE MIR -64 198 82 345 24 0 0 chr1 125968288 125968330 -156225334 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 333 45 9 chr1 125968348 125968459 -156225205 + MIR SINE MIR 30 145 -63 205 260 91 0 chr1 125969606 125969683 -156223981 - L2 LINE L2 -7 3265 3182 344 269 76 0 chr1 125969835 125969954 -156223710 - MIR SINE MIR -108 154 27 270 260 0 0 chr1 125972661 125972734 -156220930 - L3 LINE CR1 -126 1451 1379 2864 140 17 0 chr1 125973224 125973645 -156220019 + MSTA LTR MaLR 1 428 0 418 229 0 57 chr1 125975148 125975253 -156218411 - MIR3 SINE MIR -24 184 86 253 114 0 0 chr1 125976641 125976676 -156216988 - U2 snRNA snRNA -153 35 1 345 220 160 20 chr1 125976676 125976826 -156216838 + MIR SINE MIR 63 233 -29 313 172 129 78 chr1 125977341 125977457 -156216207 + L1ME4a LINE L1 5996 6117 -4 427 309 47 11 chr1 125977483 125977674 -156215990 + L2 LINE L2 2696 2893 -421 596 204 21 42 chr1 125977674 125977816 -156215848 + MIR SINE MIR 47 185 -77 541 285 83 35 chr1 125977869 125978244 -156215420 + L2 LINE L2 2921 3313 0 27 0 0 0 chr1 125979060 125979087 -156214577 + AT_rich Low_complexity Low_complexity 1 27 0 1069 258 38 2 chr1 125979349 125979624 -156214040 + MLT1G1 LTR MaLR 1 248 -347 753 227 33 57 chr1 125979626 125979650 -156214014 - L1M4c LINE L1 -2659 3985 3962 1496 219 44 30 chr1 125979650 125980015 -156213649 - MLT1A2 LTR MaLR -4 370 1 753 227 33 57 chr1 125980015 125980270 -156213394 - L1M4c LINE L1 -2682 3962 3712 * 6318 208 56 49 chr1 125980251 125980439 -156213225 - L1M4c LINE L1 -4559 2087 1902 2286 113 0 6 chr1 125980439 125980750 -156212914 - AluSc SINE Alu 0 309 1 6318 208 56 49 chr1 125980750 125982616 -156211048 - L1M4c LINE L1 -4744 1902 18 2255 120 0 0 chr1 125982693 125982984 -156210680 + AluSx SINE Alu 1 291 -21 474 277 93 90 chr1 125983395 125983738 -156209926 + MLT1G1-int LTR MaLR 1028 1371 0 2194 246 11 59 chr1 125983738 125983815 -156209849 + MLT1G1 LTR MaLR 1 80 -515 2393 132 46 58 chr1 125983815 125984248 -156209416 + MSTA LTR MaLR 1 428 0 9331 162 31 21 chr1 125984248 125985883 -156207781 + MSTA-int LTR MaLR 1 1651 0 2442 155 52 0 chr1 125985883 125986290 -156207374 + MSTA LTR MaLR 1 428 0 2194 246 11 59 chr1 125986290 125986835 -156206829 + MLT1G1 LTR MaLR 77 595 0 590 271 76 3 chr1 125986870 125987116 -156206548 - L1M4 LINE L1 -407 5714 5486 490 343 42 26 chr1 125987117 125987426 -156206238 + L2 LINE L2 2951 3264 -49 2610 177 76 19 chr1 125987435 125988287 -156205377 - MER4B LTR ERV1 0 779 1 531 274 27 11 chr1 125988373 125988641 -156205023 - L1M4 LINE L1 -743 5403 5198 2655 27 0 7 chr1 125989221 125989520 -156204144 - AluY SINE Alu -14 297 1 269 276 35 11 chr1 125990091 125990178 -156203486 + MIR SINE MIR 24 112 -96 314 173 0 0 chr1 125990760 125990812 -156202852 + MER53 DNA DNA 1 52 -137 897 167 22 17 chr1 125990814 125990994 -156202670 + MER53 DNA DNA 9 189 0 286 293 57 8 chr1 125992200 125992323 -156201341 - MIR SINE MIR -21 241 113 220 219 254 44 chr1 125993319 125993433 -156200231 + MIR SINE MIR 111 248 -14 491 356 31 0 chr1 125993492 125993714 -156199950 + MIR SINE MIR 15 243 -19 1997 173 26 3 chr1 125993842 125994188 -156199476 - MLT1A1 LTR MaLR -2 363 10 1588 203 49 3 chr1 125994267 125994572 -156199092 - MER2 DNA MER2_type -25 320 2 333 255 0 11 chr1 125994589 125994683 -156198981 - MIR SINE MIR -111 151 59 1209 157 14 9 chr1 125995044 125995254 -156198410 + L1PA16 LINE L1 5939 6149 -17 2229 113 0 0 chr1 125995262 125995563 -156198101 + AluSc SINE Alu 1 301 -8 223 272 88 68 chr1 125995612 125995759 -156197905 - L2 LINE L2 -65 3248 3099 1853 176 28 11 chr1 125996045 125996402 -156197262 + MLT1A1 LTR MaLR 3 365 0 305 233 58 29 chr1 125998262 125998365 -156195299 + MER113 DNA MER1_type? 9 114 -407 1687 160 0 43 chr1 125998973 125999273 -156194391 + AluJb SINE Alu 1 287 -25 318 294 168 0 chr1 125999706 125999825 -156193839 + L2 LINE L2 3167 3305 -8 266 267 0 0 chr1 125999960 126000035 -156193629 - L1MEc LINE L1 -4145 2251 2177 467 129 0 0 chr1 126000045 126000115 -156193549 + MLT2B1 LTR ERVL 1 70 -450 524 240 190 0 chr1 126000117 126000296 -156193368 + MIR SINE MIR 37 249 -13 253 331 192 0 chr1 126000963 126001114 -156192550 + MIR3 SINE MIR 14 193 -15 659 213 142 58 chr1 126001386 126001611 -156192053 - MLT1K LTR MaLR -23 565 322 287 305 32 0 chr1 126001681 126001776 -156191888 - MLT1L LTR MaLR -432 183 86 285 269 28 35 chr1 126002096 126002237 -156191427 - L1P5 LINE L1 -697 5457 5318 393 298 66 19 chr1 126002292 126002550 -156191114 - L1M4 LINE L1 -839 5307 5038 900 239 73 56 chr1 126002551 126002994 -156190670 - MLT1H LTR MaLR -7 583 23 1414 281 80 40 chr1 126003030 126003955 -156189709 - L1M4 LINE L1 -1113 5033 4072 1437 244 74 55 chr1 126003975 126004183 -156189481 - L1M4 LINE L1 -2161 3985 3783 2721 88 16 5 chr1 126004183 126004567 -156189097 - L1MA1 LINE L1 0 6302 5915 1437 244 74 55 chr1 126004567 126005074 -156188590 - L1M4 LINE L1 -2363 3783 3256 1370 228 162 38 chr1 126005175 126005601 -156188063 + MLT2B1 LTR ERVL 1 479 -41 590 293 93 44 chr1 126006333 126007064 -156186600 + L1MEd LINE L1 1 822 -5297 201 229 0 0 chr1 126007245 126007280 -156186384 + polypurine Low_complexity Low_complexity 3 37 0 6179 161 9 18 chr1 126007336 126008087 -156185577 - L1P5 LINE L1 -1075 5071 4332 2150 125 0 22 chr1 126008087 126008400 -156185264 + AluSg SINE Alu 3 308 -2 6179 161 9 18 chr1 126008400 126008766 -156184898 - L1P5 LINE L1 -1814 4332 3964 6452 92 11 1 chr1 126008770 126009718 -156183946 + L1PA13 LINE L1 5205 6161 -2 464 306 91 31 chr1 126009757 126010143 -156183521 + L2 LINE L2 1812 2220 -1094 570 281 14 0 chr1 126010145 126010284 -156183380 + Charlie2 DNA MER1_type 15 155 -2627 544 167 14 83 chr1 126010393 126010483 -156183181 + Charlie2 DNA MER1_type 1857 1935 -927 1734 137 67 33 chr1 126010483 126010782 -156182882 + AluJb SINE Alu 1 309 -3 544 167 14 83 chr1 126010782 126010835 -156182829 + Charlie2 DNA MER1_type 1935 1990 -872 1084 162 58 11 chr1 126010836 126011027 -156182637 - MSTB LTR MaLR -192 234 35 2488 212 37 53 chr1 126011028 126011402 -156182262 + Charlie2 DNA MER1_type 2001 2379 -483 1134 104 186 0 chr1 126011402 126011595 -156182069 - MER30 DNA MER1_type -1 229 1 2488 212 37 53 chr1 126011595 126011834 -156181830 + Charlie2 DNA MER1_type 2379 2601 -261 1690 168 7 11 chr1 126011834 126012146 -156181518 - AluJb SINE Alu 0 311 1 2488 212 37 53 chr1 126012146 126012343 -156181321 + Charlie2 DNA MER1_type 2601 2800 -62 834 230 8 69 chr1 126012345 126012606 -156181058 + L1ME2 LINE L1 5904 6148 -16 288 281 62 48 chr1 126012645 126012855 -156180809 + L1MC4 LINE L1 7829 8041 -1 2078 172 45 11 chr1 126013444 126013822 -156179842 + MSTB LTR MaLR 36 426 0 367 279 115 19 chr1 126013874 126014169 -156179495 - MLT1L LTR MaLR -111 504 130 209 182 45 0 chr1 126014414 126014458 -156179206 - L2 LINE L2 -5 3308 3263 869 234 117 14 chr1 126014460 126014742 -156178922 - Tigger8 DNA MER2_type -199 467 157 545 209 58 7 chr1 126014752 126014891 -156178773 - MIR SINE MIR 0 262 117 221 303 161 56 chr1 126014946 126015319 -156178345 + L2 LINE L2 2853 3264 -8 753 232 30 10 chr1 126017190 126017388 -156176276 - MIR SINE MIR -13 249 48 2271 108 0 3 chr1 126017394 126017700 -156175964 - AluY SINE Alu -6 305 1 1023 167 21 42 chr1 126017739 126017815 -156175849 + MER5A DNA MER1_type 1 77 -112 2325 77 3 7 chr1 126017815 126018124 -156175540 + AluSq SINE Alu 1 308 0 1023 167 21 42 chr1 126018124 126018238 -156175426 + MER5A DNA MER1_type 77 188 -1 23 0 0 0 chr1 126018258 126018281 -156175383 + AT_rich Low_complexity Low_complexity 1 23 0 195 375 8 33 chr1 126018494 126018614 -156175050 - L2 LINE L2 -182 3090 2974 226 228 165 70 chr1 126018736 126018894 -156174770 + MIR SINE MIR 90 262 0 196 156 0 0 chr1 126018903 126018935 -156174729 + MIR SINE MIR 225 256 -6 477 228 18 70 chr1 126018995 126019166 -156174498 + L2 LINE L2 3130 3291 -22 591 298 19 0 chr1 126020632 126020837 -156172827 + MIR SINE MIR 28 236 -26 192 305 68 0 chr1 126021037 126021096 -156172568 - L2 LINE L2 -52 3220 3158 463 175 329 7 chr1 126021349 126021492 -156172172 - MER5A DNA MER1_type 0 189 1 302 307 31 39 chr1 126022036 126022163 -156171501 - MIR SINE MIR -50 212 87 658 258 131 0 chr1 126022493 126022714 -156170950 - MIR SINE MIR 0 262 13 958 184 34 24 chr1 126022775 126022981 -156170683 - MER3 DNA MER1_type 0 209 2 616 235 133 20 chr1 126023296 126023492 -156170172 - MIR SINE MIR -33 229 12 1735 163 37 7 chr1 126024459 126024754 -156168910 + AluJb SINE Alu 1 304 -8 408 40 0 0 chr1 126025860 126025910 -156167754 + (TG)n Simple_repeat Simple_repeat 1 50 0 1474 168 41 89 chr1 126026250 126026643 -156167021 - MLT1A2 LTR MaLR 0 374 1 282 255 104 19 chr1 126026661 126026767 -156166897 - L2 LINE L2 0 3313 3199 2024 141 14 0 chr1 126027829 126028120 -156165544 + AluJb SINE Alu 1 295 -17 206 261 0 0 chr1 126029048 126029094 -156164570 + L2 LINE L2 3186 3231 -41 355 281 11 0 chr1 126031857 126031946 -156161718 + MIR3 SINE MIR 82 171 -37 257 266 16 0 chr1 126032687 126032751 -156160913 + G-rich Low_complexity Low_complexity 4 68 0 1472 237 129 44 chr1 126033267 126033338 -156160326 - MLT1L LTR MaLR 0 615 551 488 232 28 50 chr1 126033338 126033519 -156160145 - MER104 DNA MER2_type 0 180 4 1472 237 129 44 chr1 126033519 126033975 -156159689 - MLT1L LTR MaLR -64 551 43 1394 243 152 23 chr1 126035320 126035834 -156157830 - MLT1K LTR MaLR -8 580 1 182 228 0 18 chr1 126036091 126036148 -156157516 - MIR SINE MIR -135 73 18 429 298 13 44 chr1 126037860 126038018 -156155646 + MIR SINE MIR 8 160 -102 587 198 49 56 chr1 126038040 126038202 -156155462 - MER46A DNA MER2_type -73 163 3 * 1190 149 21 0 chr1 126038060 126038254 -156155410 + MER46A DNA MER2_type 1 198 -38 5258 130 20 1 chr1 126038600 126039431 -156154233 + L1MA4 LINE L1 5447 6293 -7 35 24 0 0 chr1 126039431 126039473 -156154191 + AT_rich Low_complexity Low_complexity 1 42 0 189 347 0 20 chr1 126040869 126040967 -156152697 + MIR SINE MIR 127 222 -40 5801 117 39 1 chr1 126040986 126041866 -156151798 - L1PA16 LINE L1 0 6166 5254 352 295 9 0 chr1 126042609 126042714 -156150950 + MIR SINE MIR 59 164 -98 201 288 36 110 chr1 126042976 126043097 -156150567 + MIR SINE MIR 35 134 -128 1851 139 66 3 chr1 126043097 126043384 -156150280 + AluJo SINE Alu 1 305 -7 201 288 36 110 chr1 126043384 126043481 -156150183 + MIR SINE MIR 134 237 -25 654 216 174 12 chr1 126043733 126043992 -156149672 - MLT1K LTR MaLR -22 566 266 323 270 26 17 chr1 126044025 126044140 -156149524 - MLT1K LTR MaLR -463 125 10 228 106 15 61 chr1 126047230 126047296 -156146368 + (ATATG)n Simple_repeat Simple_repeat 4 66 0 25 31 0 0 chr1 126047549 126047581 -156146083 + AT_rich Low_complexity Low_complexity 1 32 0 254 313 179 0 chr1 126047847 126047981 -156145683 - L2 LINE L2 -8 3264 3107 192 300 62 12 chr1 126048556 126048636 -156145028 + MIR SINE MIR 81 164 -98 303 245 31 51 chr1 126048879 126048977 -156144687 + MIR3 SINE MIR 108 203 -5 40 21 0 0 chr1 126050424 126050471 -156143193 + AT_rich Low_complexity Low_complexity 1 47 0 276 226 131 24 chr1 126050735 126050819 -156142845 + MIR SINE MIR 35 127 -135 1416 150 9 114 chr1 126050835 126051381 -156142283 - L1P LINE L1 -744 5421 4957 786 131 0 0 chr1 126051481 126051611 -156142053 - L1P LINE L1 -1147 4999 4870 937 255 106 22 chr1 126051611 126051968 -156141696 - MER57B LTR ERV1 -38 396 10 192 152 0 0 chr1 126052226 126052259 -156141405 + (TATG)n Simple_repeat Simple_repeat 3 35 0 630 286 87 17 chr1 126052409 126052696 -156140968 + L1ME1 LINE L1 71 377 -6019 * 1600 237 38 53 chr1 126052666 126053253 -156140411 + L1ME1 LINE L1 3742 4319 -1896 2351 231 68 47 chr1 126053254 126053581 -156140083 + L1ME1 LINE L1 4796 5115 -1120 2692 20 0 0 chr1 126053581 126053879 -156139785 + AluYa5 SINE Alu 1 298 -13 2351 231 68 47 chr1 126053879 126054923 -156138741 + L1ME1 LINE L1 5115 6197 -38 2005 180 82 20 chr1 126054923 126055362 -156138302 + MLT1C LTR MaLR 2 467 0 2351 231 68 47 chr1 126055362 126055398 -156138266 + L1ME1 LINE L1 6197 6231 -4 347 362 70 11 chr1 126055486 126055671 -156137993 + L2 LINE L2 2896 3091 -222 699 294 54 40 chr1 126055863 126056159 -156137505 + L2 LINE L2 3014 3313 0 181 338 40 14 chr1 126056196 126056270 -156137394 - MIR SINE MIR -94 114 39 322 244 22 0 chr1 126057432 126057522 -156136142 + L2 LINE L2 2249 2340 -974 200 269 0 19 chr1 126058012 126058064 -156135600 + G-rich Low_complexity Low_complexity 4 54 0 1553 51 0 5 chr1 126058848 126059045 -156134619 - L1PB1 LINE L1 0 6151 5956 549 309 43 27 chr1 126059565 126059753 -156133911 + MIR3 SINE MIR 2 192 -16 624 304 124 19 chr1 126060843 126061221 -156132443 - L2 LINE L2 -838 2476 2059 295 293 32 114 chr1 126061317 126061686 -156131978 - L2 LINE L2 -50 3222 2884 724 289 61 50 chr1 126061837 126062332 -156131332 + L1ME4a LINE L1 5329 5828 -293 2021 110 7 0 chr1 126062332 126062605 -156131059 + AluSx SINE Alu 20 294 -18 2133 99 3 0 chr1 126063125 126063429 -156130235 - AluSx SINE Alu 0 305 1 405 331 58 19 chr1 126063660 126063814 -156129850 + L2 LINE L2 3112 3271 -1 721 262 68 65 chr1 126065124 126065372 -156128292 + MIR SINE MIR 2 250 -12 1919 130 31 0 chr1 126066815 126067107 -156126557 - AluJb SINE Alu -11 301 1 217 271 16 101 chr1 126069413 126069542 -156124122 + MIR3 SINE MIR 85 202 -6 25 31 0 0 chr1 126069616 126069648 -156124016 + AT_rich Low_complexity Low_complexity 1 32 0 440 210 24 0 chr1 126069810 126069977 -156123687 + (TA)n Simple_repeat Simple_repeat 1 171 0 834 184 0 0 chr1 126070306 126070442 -156123222 + MER2 DNA MER2_type 1 136 -209 4285 117 37 30 chr1 126070453 126071190 -156122474 - L1MA4 LINE L1 0 7719 6978 5785 152 19 10 chr1 126071190 126072301 -156121363 - L1MA4 LINE L1 -958 6607 5487 984 147 6 6 chr1 126072310 126072466 -156121198 + AluSg SINE Alu 1 156 -154 7242 230 26 22 chr1 126072588 126075079 -156118585 - L1MA4 LINE L1 -4357 3208 16 1066 195 13 18 chr1 126075083 126075309 -156118355 + MER2 DNA MER2_type 120 344 -1 2210 104 0 7 chr1 126076338 126076636 -156117028 - AluSx SINE Alu -4 308 13 196 378 96 40 chr1 126076950 126077252 -156116412 - L2 LINE L2 -74 3198 2880 335 308 241 4 chr1 126077467 126077704 -156115960 - L2 LINE L2 -810 2504 2212 363 236 86 81 chr1 126078223 126078470 -156115194 + LTR19C LTR ERV1 1 345 -434 * 825 199 99 52 chr1 126078442 126078653 -156115011 + MER61E LTR ERV1 93 313 -256 2332 181 13 0 chr1 126078753 126079218 -156114446 - MSTA-int LTR MaLR -1180 471 1 1155 148 100 9 chr1 126079218 126079447 -156114217 - MSTA LTR MaLR 0 428 179 2266 296 28 35 chr1 126079614 126080710 -156112954 + L1MEc LINE L1 74 1160 -5236 1979 240 18 35 chr1 126080710 126081259 -156112405 + MLT1F LTR MaLR 3 542 0 2266 296 28 35 chr1 126081259 126081496 -156112168 + L1MEc LINE L1 1160 1397 -4999 341 273 102 16 chr1 126081502 126081630 -156112034 + L1PA15-16 LINE L1 1 139 -6710 * 1485 31 5 0 chr1 126081625 126081816 -156111848 - L1P LINE L1 -884 5262 5071 890 87 0 0 chr1 126081812 126081938 -156111726 + L1P1 LINE L1 5658 5783 -372 * 41269 46 4 3 chr1 126081938 126088076 -156105588 + L1PA4 LINE L1 4 6152 -3 389 229 143 45 chr1 126088077 126088273 -156105391 + L1MEc LINE L1 1623 1798 -4598 1642 171 7 0 chr1 126088273 126088566 -156105098 + L1MB5 LINE L1 5874 6168 -6 389 229 143 45 chr1 126088566 126088705 -156104959 + L1MEc LINE L1 1798 1991 -4405 1285 144 125 86 chr1 126088706 126089067 -156104597 - THE1C LTR MaLR 0 375 1 7902 123 95 47 chr1 126089067 126090360 -156103304 - THE1C-int LTR MaLR 0 1580 203 2211 157 41 18 chr1 126090360 126090800 -156102864 + LTR7 LTR ERV1 1 450 0 7902 123 95 47 chr1 126090800 126091012 -156102652 - THE1C-int LTR MaLR -1377 203 3 522 113 0 0 chr1 126091014 126091094 -156102570 - THE1C LTR MaLR 0 428 349 6406 104 41 17 chr1 126091094 126091264 -156102400 - HERVL LTR ERVL -3608 2046 1882 2319 104 0 19 chr1 126091264 126091580 -156102084 + AluSg SINE Alu 1 310 0 6406 104 41 17 chr1 126091580 126092490 -156101174 - HERVL LTR ERVL -3772 1882 946 * 28550 74 4 2 chr1 126092482 126096094 -156097570 + HERVL-A2 LTR ERVL 2035 5654 0 3285 98 4 15 chr1 126096094 126096118 -156097546 + MLT2A2 LTR ERVL 1 24 -429 2143 113 21 0 chr1 126096118 126096409 -156097255 + AluSx SINE Alu 1 297 -15 3285 98 4 15 chr1 126096409 126096842 -156096822 + MLT2A2 LTR ERVL 24 453 0 656 151 73 189 chr1 126097191 126097284 -156096380 - MER8 DNA MER2_type 0 239 137 2238 121 0 3 chr1 126097284 126097597 -156096067 + AluSx SINE Alu 1 312 0 656 151 73 189 chr1 126097597 126097762 -156095902 - MER8 DNA MER2_type -102 137 11 607 171 0 9 chr1 126097768 126097873 -156095791 - FLAM_A SINE Alu -12 130 27 259 403 0 25 chr1 126098155 126098274 -156095390 - MLT1I LTR MaLR -92 317 202 21 0 0 0 chr1 126099168 126099189 -156094475 + AT_rich Low_complexity Low_complexity 1 21 0 1293 181 163 85 chr1 126099369 126099887 -156093777 + LTR36 LTR ERV1 1 611 0 21 0 0 0 chr1 126100032 126100053 -156093611 + AT_rich Low_complexity Low_complexity 1 21 0 512 156 0 0 chr1 126100058 126100154 -156093510 - L1PB1 LINE L1 -1481 4665 4570 * 2582 134 13 5 chr1 126100153 126101578 -156092086 + L1PB1 LINE L1 4660 6149 -2 828 294 121 26 chr1 126101980 126102443 -156091221 + L2 LINE L2 1908 2414 -900 608 225 90 45 chr1 126103587 126103809 -156089855 - L2 LINE L2 -1 3312 3081 852 265 122 20 chr1 126103943 126104286 -156089378 + MLT1J2 LTR MaLR 1 378 -72 59 65 0 0 chr1 126104360 126104468 -156089196 + AT_rich Low_complexity Low_complexity 1 108 0 3433 261 181 23 chr1 126104791 126106538 -156087126 + L2 LINE L2 1283 3310 -3 241 319 11 11 chr1 126107514 126107608 -156086056 + GA-rich Low_complexity Low_complexity 6 99 0 3071 155 36 3 chr1 126107841 126108416 -156085248 + L1MB3 LINE L1 5588 6181 -2 1092 263 12 4 chr1 126108465 126108716 -156084948 - MIR SINE MIR 0 262 10 7556 214 25 8 chr1 126109096 126110897 -156082767 - L1M4 LINE L1 -753 5629 3799 250 218 39 13 chr1 126110891 126110969 -156082695 - L1ME LINE L1 -515 5606 5527 * 284 271 33 66 chr1 126110988 126111110 -156082554 - MIR SINE MIR 0 262 145 629 237 0 0 chr1 126111125 126111239 -156082425 - MER21B LTR ERV1 -422 441 328 8636 195 95 40 chr1 126111240 126112918 -156080746 - L1M4 LINE L1 -2569 3813 2228 1497 192 52 21 chr1 126112918 126113228 -156080436 - AluJb SINE Alu 0 312 1 8636 195 95 40 chr1 126113228 126114457 -156079207 - L1M4 LINE L1 -4154 2228 665 1653 196 11 3 chr1 126114457 126114743 -156078921 - AluJo SINE Alu -24 288 1 8636 195 95 40 chr1 126114743 126115416 -156078248 - L1M4 LINE L1 -5717 665 30 475 258 113 0 chr1 126115845 126115969 -156077695 + MIR SINE MIR 25 162 -100 1155 231 115 16 chr1 126115970 126116282 -156077382 + MER2 DNA MER2_type 3 345 0 26 50 0 0 chr1 126117218 126117258 -156076406 + AT_rich Low_complexity Low_complexity 1 40 0 1392 188 18 32 chr1 126117923 126118200 -156075464 + AluJo SINE Alu 1 273 -39 21 36 0 0 chr1 126118202 126118230 -156075434 + AT_rich Low_complexity Low_complexity 1 28 0 6065 206 51 35 chr1 126118246 126118543 -156075121 + L1M4 LINE L1 8 299 -6243 201 39 0 0 chr1 126118543 126118569 -156075095 + (CAGAA)n Simple_repeat Simple_repeat 5 30 0 6065 206 51 35 chr1 126118569 126119788 -156073876 + L1M4 LINE L1 299 1549 -4993 721 200 0 0 chr1 126120352 126120472 -156073192 + FLAM_C SINE Alu 1 120 -23 24 0 0 0 chr1 126120562 126120586 -156073078 + AT_rich Low_complexity Low_complexity 1 24 0 2126 90 3 10 chr1 126121045 126121346 -156072318 + L1PA13 LINE L1 5857 6155 -8 187 277 268 1 chr1 126121931 126122033 -156071631 - MIR SINE MIR -76 132 8 867 226 18 0 chr1 126122752 126122920 -156070744 - MIR SINE MIR -6 256 86 251 239 0 0 chr1 126123318 126123364 -156070300 + L2 LINE L2 3205 3250 -22 24 0 0 0 chr1 126124021 126124045 -156069619 + AT_rich Low_complexity Low_complexity 1 24 0 235 267 31 15 chr1 126124791 126124863 -156068801 + MIR SINE MIR 78 146 -62 366 286 30 23 chr1 126125284 126125417 -156068247 + ERVL LTR ERVL 4470 4603 -1161 307 233 50 8 chr1 126126531 126126651 -156067013 + HAL1b LINE L1 695 819 -529 234 0 0 0 chr1 126126768 126126794 -156066870 + (CA)n Simple_repeat Simple_repeat 2 27 0 4472 171 30 19 chr1 126126854 126127785 -156065879 + L1MB2 LINE L1 5221 6163 -8 6499 189 36 5 chr1 126129177 126130600 -156063064 + L1 LINE L1 2593 4059 -2087 9514 112 12 7 chr1 126130601 126132010 -156061654 + L1PBa LINE L1 666 2081 -4782 31381 109 12 54 chr1 126132013 126135143 -156058521 + L1PA7 LINE L1 2 2717 -3437 2176 129 0 0 chr1 126135143 126135453 -156058211 + AluSx SINE Alu 1 310 -2 31381 109 12 54 chr1 126135453 126138753 -156054911 + L1PA7 LINE L1 2717 6154 0 7685 213 18 20 chr1 126138739 126139846 -156053818 + L1PBa LINE L1 2147 3255 -3607 * 2093 108 3 26 chr1 126139846 126140151 -156053513 + AluSq SINE Alu 5 302 -11 7685 213 18 20 chr1 126140151 126141410 -156052254 + L1PBa LINE L1 3255 4504 -2358 5472 88 28 51 chr1 126141397 126141660 -156052004 + L1MA3 LINE L1 5328 5596 -709 * 2399 89 0 0 chr1 126141660 126141964 -156051700 + AluSx SINE Alu 1 304 -8 5472 88 28 51 chr1 126141964 126142690 -156050974 + L1MA3 LINE L1 5596 6305 0 1236 211 8 63 chr1 126142689 126143040 -156050624 + L1M4 LINE L1 3679 4010 -2136 * 637 197 5 62 chr1 126143040 126143182 -156050482 + L1M4 LINE L1 5134 5264 -882 2332 68 0 33 chr1 126143182 126143489 -156050175 - AluY SINE Alu -14 297 1 637 197 5 62 chr1 126143489 126143539 -156050125 + L1M4 LINE L1 5264 5315 -831 6036 150 24 12 chr1 126143541 126144822 -156048842 - L1MA4 LINE L1 -6 6294 5006 1170 198 23 0 chr1 126144840 126145079 -156048585 + AluJo SINE Alu 73 316 0 915 285 62 29 chr1 126145085 126145499 -156048165 - L1M3f LINE L1 -4368 666 246 394 317 21 7 chr1 126146373 126146515 -156047149 - L1M3f LINE L1 -5775 180 37 4819 208 63 81 chr1 126146526 126147249 -156046415 + L1MD1 LINE L1 3453 4188 -1958 2113 96 0 0 chr1 126147249 126147580 -156046084 + AluSc SINE Alu 1 331 0 4819 208 63 81 chr1 126147580 126147832 -156045832 + L1MD1 LINE L1 4188 4443 -1703 1052 171 27 18 chr1 126147832 126148054 -156045610 + L1MA7 LINE L1 6064 6287 -4 4819 208 63 81 chr1 126148054 126148900 -156044764 + L1MD1 LINE L1 4443 5242 -904 1087 223 55 60 chr1 126148900 126149264 -156044400 + MLT1A1 LTR MaLR 1 362 -3 4819 208 63 81 chr1 126149264 126149345 -156044319 + L1MD1 LINE L1 5242 5323 -823 2481 83 20 20 chr1 126149369 126149718 -156043946 + THE1C LTR MaLR 27 375 0 3928 153 71 52 chr1 126149719 126150554 -156043110 + L1MD1 LINE L1 5392 6242 0 359 223 81 47 chr1 126150582 126150793 -156042871 + HAL1b LINE L1 942 1159 -189 2356 66 0 23 chr1 126151004 126151305 -156042359 + AluY SINE Alu 1 294 -17 29 70 0 0 chr1 126151663 126151720 -156041944 + AT_rich Low_complexity Low_complexity 1 57 0 806 326 96 9 chr1 126151737 126152059 -156041605 - MLT1I LTR MaLR 0 409 60 3631 146 15 73 chr1 126152463 126153184 -156040480 + LTR58 LTR ERV1 1 679 0 289 372 115 30 chr1 126153675 126153909 -156039755 + MIR SINE MIR 9 262 0 1210 34 0 0 chr1 126154068 126154216 -156039448 + L1PA4 LINE L1 6004 6151 -4 2601 30 3 0 chr1 126154286 126154585 -156039079 - AluY SINE Alu 0 311 12 25 31 0 0 chr1 126154703 126154735 -156038929 + AT_rich Low_complexity Low_complexity 1 32 0 1884 123 0 31 chr1 126155079 126155402 -156038262 + AluSx SINE Alu 1 314 0 223 245 38 0 chr1 126155601 126155654 -156038010 + MIR3 SINE MIR 154 208 0 37 39 0 0 chr1 126155907 126155958 -156037706 + AT_rich Low_complexity Low_complexity 1 51 0 466 181 30 193 chr1 126156147 126156208 -156037456 + L1MC5 LINE L1 6734 6803 -1158 1132 30 0 0 chr1 126156208 126156341 -156037323 + L1PA5 LINE L1 6016 6148 -6 466 181 30 193 chr1 126156341 126156549 -156037115 + L1MC5 LINE L1 6803 6959 -1002 22 0 0 0 chr1 126156550 126156572 -156037092 + AT_rich Low_complexity Low_complexity 1 22 0 1256 237 77 19 chr1 126158603 126159034 -156034630 - L1ME3A LINE L1 -232 6332 5877 419 306 123 32 chr1 126158704 126159112 -156034552 - L1MA3 LINE L1 -480 6219 5775 * 471 288 55 5 chr1 126159302 126159521 -156034143 - L1ME3A LINE L1 -1005 5535 5306 331 310 70 0 chr1 126159552 126159723 -156033941 - L1ME3A LINE L1 -1292 5248 5066 285 347 88 6 chr1 126159784 126160124 -156033540 - L1ME3A LINE L1 -4591 1949 1582 1284 175 212 0 chr1 126160127 126160419 -156033245 - MER46B DNA MER2_type -1 235 7 855 255 92 89 chr1 126160579 126160866 -156032798 + L1M4 LINE L1 2163 2448 -3698 1252 188 17 21 chr1 126160866 126161105 -156032559 - MER8 DNA MER2_type 0 239 2 855 255 92 89 chr1 126161105 126161728 -156031936 + L1M4 LINE L1 2448 3076 -3070 1986 138 3 3 chr1 126161733 126162030 -156031634 + AluSx SINE Alu 3 299 -13 244 239 23 11 chr1 126162038 126162126 -156031538 + L1M4 LINE L1 3224 3312 -2834 2339 220 39 9 chr1 126162336 126162904 -156030760 - L1ME2 LINE L1 -11 6153 5569 2601 163 30 13 chr1 126162917 126163389 -156030275 - L1M3 LINE L1 -388 5795 5316 380 280 8 0 chr1 126163397 126163515 -156030149 + L1M4 LINE L1 3519 3637 -2509 * 40398 67 7 3 chr1 126163514 126169687 -156023977 - L1PA5 LINE L1 0 6154 12 8188 248 84 39 chr1 126169723 126172916 -156020748 - L1M4b LINE L1 -811 6146 3100 1980 185 14 8 chr1 126172916 126173279 -156020385 + MLT1A1 LTR MaLR 1 365 0 8188 248 84 39 chr1 126173279 126174007 -156019657 - L1M4b LINE L1 -3857 3100 2407 1888 159 0 7 chr1 126174007 126174302 -156019362 + AluJb SINE Alu 1 293 -19 8188 248 84 39 chr1 126174302 126174775 -156018889 - L1M4b LINE L1 -4550 2407 1397 334 277 199 0 chr1 126174744 126174885 -156018779 - L1ME LINE L1 -407 6574 6406 * 31 58 0 0 chr1 126174920 126174972 -156018692 + AT_rich Low_complexity Low_complexity 1 52 0 227 271 140 0 chr1 126175038 126175145 -156018519 - L2 LINE L2 0 3313 3192 205 281 56 6 chr1 126175171 126175260 -156018404 + MER5B DNA MER1_type 2 101 -88 25 0 0 0 chr1 126175630 126175655 -156018009 + AT_rich Low_complexity Low_complexity 1 25 0 567 223 0 0 chr1 126176032 126176135 -156017529 - FRAM SINE Alu -73 103 1 21 0 0 0 chr1 126176146 126176167 -156017497 + AT_rich Low_complexity Low_complexity 1 21 0 670 122 35 0 chr1 126176171 126176286 -156017378 + L1MA7 LINE L1 6168 6286 -5 394 223 29 29 chr1 126176426 126176529 -156017135 - MIR SINE MIR -59 203 101 352 324 147 0 chr1 126177016 126177186 -156016478 + MIR SINE MIR 56 250 -12 254 354 35 90 chr1 126177371 126177659 -156016005 + L2 LINE L2 2818 3089 -183 408 313 114 11 chr1 126177718 126177894 -156015770 + MLT1K LTR MaLR 87 280 -308 382 103 69 0 chr1 126178035 126178093 -156015571 + L2 LINE L2 3251 3312 -1 351 324 60 50 chr1 126178719 126179037 -156014627 + L1M4 LINE L1 2732 3052 -3094 2286 137 68 0 chr1 126179037 126179418 -156014246 + MSTA-int LTR MaLR 1229 1635 -16 1935 177 106 0 chr1 126179433 126179811 -156013853 + MSTA LTR MaLR 1 418 -10 15701 149 26 13 chr1 126179820 126180461 -156013203 + L1MA3 LINE L1 2470 3101 -4623 1794 89 115 11 chr1 126180461 126180731 -156012933 - AluSg SINE Alu -12 298 1 15701 149 26 13 chr1 126180731 126185270 -156008394 + L1MA3 LINE L1 3101 7724 0 328 346 83 38 chr1 126185446 126185735 -156007929 + L1ME4a LINE L1 5274 5575 -546 257 277 70 16 chr1 126185770 126186012 -156007652 + L1ME4a LINE L1 5661 5915 -206 252 189 0 0 chr1 126186996 126187070 -156006594 + T-rich Low_complexity Low_complexity 1 74 0 27 49 0 0 chr1 126187685 126187726 -156005938 + AT_rich Low_complexity Low_complexity 1 41 0 29 78 0 0 chr1 126187774 126187838 -156005826 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr1 126187912 126187934 -156005730 + AT_rich Low_complexity Low_complexity 1 22 0 234 246 87 14 chr1 126188888 126188957 -156004707 - MIR3 SINE MIR -21 187 114 585 217 47 57 chr1 126189094 126189306 -156004358 + L1MC5 LINE L1 7705 7914 -47 379 39 19 0 chr1 126189519 126189571 -156004093 + L1PA6 LINE L1 6099 6151 -3 35 24 0 0 chr1 126190448 126190490 -156003174 + AT_rich Low_complexity Low_complexity 1 42 0 710 226 75 6 chr1 126191201 126191360 -156002304 + FAM SINE Alu 1 170 -5 219 413 8 0 chr1 126192176 126192302 -156001362 - L2 LINE L2 -592 2722 2596 181 297 99 11 chr1 126192397 126192488 -156001176 - MIR SINE MIR -48 214 116 273 184 22 54 chr1 126192514 126192592 -156001072 + L1ME LINE L1 29 105 -5965 360 0 0 0 chr1 126192592 126192632 -156001032 + (TG)n Simple_repeat Simple_repeat 2 41 0 273 184 22 54 chr1 126192632 126192678 -156000986 + L1ME LINE L1 105 151 -5919 1640 252 113 40 chr1 126192816 126193838 -155999826 + L1ME LINE L1 229 1288 -4792 4217 248 71 17 chr1 126193855 126194287 -155999377 + L1ME LINE L1 1400 1807 -4273 2119 58 0 0 chr1 126194287 126194545 -155999119 + AluY SINE Alu 41 298 -13 4217 248 71 17 chr1 126194545 126195861 -155997803 + L1ME LINE L1 1807 3230 -2850 2149 132 0 3 chr1 126195861 126196171 -155997493 + AluSx SINE Alu 1 309 -3 4217 248 71 17 chr1 126196171 126196520 -155997144 + L1ME LINE L1 3230 3559 -2521 1483 163 24 4 chr1 126196520 126196914 -155996750 + LTR47A LTR ERVL 1 452 0 1968 228 63 8 chr1 126196915 126197438 -155996226 + L1ME LINE L1 3556 4107 -1973 1849 221 11 36 chr1 126197448 126197712 -155995952 + L1ME LINE L1 4317 4561 -1519 2459 75 0 0 chr1 126197712 126198020 -155995644 + AluY SINE Alu 1 308 -3 1849 221 11 36 chr1 126198020 126198306 -155995358 + L1ME LINE L1 4561 4853 -1227 527 304 102 38 chr1 126198308 126198621 -155995043 + L2 LINE L2 2544 2876 -438 367 327 20 112 chr1 126198667 126198934 -155994730 + L2 LINE L2 2998 3235 -37 1946 138 7 3 chr1 126198934 126199230 -155994434 - AluSx SINE Alu -15 297 1 367 327 20 112 chr1 126199230 126199265 -155994399 + L2 LINE L2 3235 3272 0 * 645 291 12 6 chr1 126199264 126199436 -155994228 - MIR SINE MIR -62 200 28 1307 209 42 16 chr1 126199461 126199768 -155993896 + MER61A LTR ERV1 1 315 -28 4136 137 17 86 chr1 126199796 126200677 -155992987 + MER61A-int LTR ERV1 21 840 -4377 2102 113 13 0 chr1 126200677 126200988 -155992676 + MER61A-int LTR ERV1 958 1272 -3945 26116 87 38 11 chr1 126200997 126201547 -155992117 + MER61A-int LTR ERV1 1396 1929 -3288 2155 119 0 0 chr1 126201547 126201840 -155991824 + AluSx SINE Alu 1 293 -19 26116 87 38 11 chr1 126201840 126205009 -155988655 + MER61A-int LTR ERV1 1929 5217 0 1516 179 51 14 chr1 126205022 126205318 -155988346 + MER61A LTR ERV1 9 315 -28 387 257 44 18 chr1 126205398 126205511 -155988153 - L2 LINE L2 -4 3309 3194 335 364 107 22 chr1 126205503 126205775 -155987889 - L2 LINE L2 0 3272 2978 * 731 254 13 54 chr1 126205961 126206185 -155987479 + MER58C DNA MER1_type 1 215 0 308 233 33 0 chr1 126208727 126208877 -155984787 + (CAGAGA)n Simple_repeat Simple_repeat 2 156 0 2141 235 245 30 chr1 126208949 126210169 -155983495 + L1M2a LINE L1 1 1470 -5739 363 225 36 51 chr1 126210171 126210309 -155983355 + L2 LINE L2 3113 3248 -65 234 385 10 0 chr1 126210713 126210817 -155982847 - L2 LINE L2 -594 2720 2616 242 278 19 0 chr1 126211670 126211778 -155981886 + (TA)n Simple_repeat Simple_repeat 2 111 0 247 235 15 0 chr1 126211812 126211880 -155981784 - Charlie7 DNA MER1_type -2511 101 33 7082 50 5 1 chr1 126212246 126213412 -155980252 + L1PA6 LINE L1 4975 6143 -11 33 88 0 22 chr1 126213695 126213831 -155979833 + AT_rich Low_complexity Low_complexity 1 133 0 196 334 2 15 chr1 126214859 126214954 -155978710 + MIR SINE MIR 78 172 -36 236 129 0 86 chr1 126215318 126215388 -155978276 + (TTAA)n Simple_repeat Simple_repeat 1 64 0 23 0 0 0 chr1 126215794 126215817 -155977847 + AT_rich Low_complexity Low_complexity 1 23 0 359 194 117 29 chr1 126216817 126216920 -155976744 + L1ME LINE L1 5709 5820 -301 198 307 0 27 chr1 126217182 126217257 -155976407 - MIR SINE MIR -27 235 163 408 314 55 55 chr1 126217275 126217495 -155976169 + MIR SINE MIR 43 262 0 192 330 65 75 chr1 126217776 126218070 -155975594 - L2 LINE L2 -337 2977 2687 2052 85 0 0 chr1 126218137 126218397 -155975267 + AluSc SINE Alu 1 260 -49 764 316 70 8 chr1 126218456 126218813 -155974851 + L1MEd LINE L1 450 828 -5291 380 291 80 76 chr1 126218949 126219224 -155974440 + L1MEd LINE L1 66 341 -5778 236 346 53 41 chr1 126219259 126219865 -155973799 + L1MEd LINE L1 490 1102 -5017 311 0 0 25 chr1 126219902 126219942 -155973722 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 826 126 0 0 chr1 126219942 126220053 -155973611 - FRAM SINE Alu -29 147 37 603 328 121 25 chr1 126220088 126220326 -155973338 + L1MEd LINE L1 1167 1381 -4929 1536 149 98 0 chr1 126220326 126220581 -155973083 + AluJo SINE Alu 1 280 -32 384 22 0 0 chr1 126220581 126220626 -155973038 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 603 328 121 25 chr1 126220626 126220913 -155972751 + L1MEd LINE L1 1380 1744 -4566 704 97 104 16 chr1 126220948 126221032 -155972632 + L1MA4A LINE L1 5689 5788 -381 351 0 0 0 chr1 126221032 126221071 -155972593 + (TG)n Simple_repeat Simple_repeat 2 40 0 704 97 104 16 chr1 126221071 126221122 -155972542 + L1MA4A LINE L1 5788 5833 -336 1044 159 0 87 chr1 126221783 126222035 -155971629 + L1MB3 LINE L1 5953 6182 -1 296 264 80 12 chr1 126222181 126222344 -155971320 + L1MEd LINE L1 896 1069 -5050 235 322 116 8 chr1 126222473 126222594 -155971070 - L2 LINE L2 -1 3271 3138 2065 120 3 0 chr1 126223286 126223578 -155970086 + AluSx SINE Alu 2 294 -18 425 183 0 106 chr1 126223592 126223696 -155969968 - L2 LINE L2 -24 3289 3197 23 68 0 0 chr1 126224035 126224079 -155969585 + AT_rich Low_complexity Low_complexity 1 44 0 371 233 60 67 chr1 126224418 126224568 -155969096 + HAL1 LINE L1 676 824 -1683 22 0 0 0 chr1 126224603 126224625 -155969039 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 126225175 126225206 -155968458 + AT_rich Low_complexity Low_complexity 1 31 0 241 179 63 84 chr1 126226319 126226414 -155967250 + L2 LINE L2 3118 3210 -103 505 324 176 25 chr1 126226490 126226569 -155967095 - L2 LINE L2 -5 3308 3242 2279 65 10 0 chr1 126226569 126226875 -155966789 + AluY SINE Alu 1 309 -2 505 324 176 25 chr1 126226875 126226924 -155966740 - L2 LINE L2 -71 3242 3202 261 0 0 0 chr1 126226924 126226953 -155966711 + (CA)n Simple_repeat Simple_repeat 2 30 0 505 324 176 25 chr1 126226953 126227255 -155966409 - L2 LINE L2 -111 3202 2812 22 56 0 0 chr1 126227628 126227664 -155966000 + AT_rich Low_complexity Low_complexity 1 36 0 9979 145 106 69 chr1 126227781 126228096 -155965568 + L1MC1 LINE L1 17 319 -6107 1617 167 94 0 chr1 126228096 126228372 -155965292 + AluSx SINE Alu 1 302 -10 9979 145 106 69 chr1 126228372 126229177 -155964487 + L1MC1 LINE L1 319 1092 -5334 639 222 0 0 chr1 126229177 126229303 -155964361 + FLAM_A SINE Alu 4 129 -4 9979 145 106 69 chr1 126229303 126229987 -155963677 + L1MC1 LINE L1 1092 1749 -4677 838 149 0 22 chr1 126229987 126230121 -155963543 + FLAM_C SINE Alu 2 132 -1 9979 145 106 69 chr1 126230121 126230242 -155963422 + L1MC1 LINE L1 1749 1864 -4562 2008 129 0 40 chr1 126230242 126230567 -155963097 + AluSx SINE Alu 1 312 0 9979 145 106 69 chr1 126230567 126230660 -155963004 + L1MC1 LINE L1 1864 1952 -4474 1992 148 3 0 chr1 126230660 126230965 -155962699 + AluSq SINE Alu 1 306 -7 9979 145 106 69 chr1 126230965 126231439 -155962225 + L1MC1 LINE L1 1952 2604 -3822 654 222 7 118 chr1 126231460 126231730 -155961934 + L1 LINE L1 5152 5391 -755 * 11094 190 32 31 chr1 126231728 126231815 -155961849 + L1MC1 LINE L1 2607 2692 -3921 1905 168 3 0 chr1 126231815 126232125 -155961539 + AluJo SINE Alu 1 311 -1 11094 190 32 31 chr1 126232125 126232324 -155961340 + L1MC1 LINE L1 2692 2889 -3724 1404 132 25 34 chr1 126232324 126232559 -155961105 - MER46A DNA MER2_type -3 233 1 11094 190 32 31 chr1 126232559 126233681 -155959983 + L1MC1 LINE L1 2889 4009 -2604 1671 171 0 58 chr1 126233681 126234008 -155959656 + AluJo SINE Alu 1 308 -4 11094 190 32 31 chr1 126234008 126236515 -155957149 + L1MC1 LINE L1 4009 6525 -88 488 226 76 107 chr1 126236534 126236816 -155956848 + L1ME LINE L1 375 661 -5422 1026 6 0 0 chr1 126237123 126237292 -155956372 + L1PA3 LINE L1 6013 6168 0 1693 171 6 25 chr1 126237341 126237656 -155956008 + AluJb SINE Alu 1 309 -3 559 267 226 19 chr1 126237715 126237985 -155955679 + L2 LINE L2 2880 3205 -108 2774 40 20 0 chr1 126237985 126238332 -155955332 - L1PA8 LINE L1 -3 6169 5816 3876 56 2 16 chr1 126238334 126238565 -155955099 + L1P3 LINE L1 5294 5527 -645 2166 90 3 3 chr1 126238565 126238855 -155954809 - AluSc SINE Alu -19 290 1 3876 56 2 16 chr1 126238855 126239138 -155954526 + L1P3 LINE L1 5527 5801 -371 347 194 161 21 chr1 126239148 126239241 -155954423 + L2 LINE L2 3208 3313 0 2071 97 33 7 chr1 126239490 126239789 -155953875 + AluSc SINE Alu 2 308 -1 2160 122 0 3 chr1 126240027 126240339 -155953325 + AluSq SINE Alu 1 311 -2 400 272 188 49 chr1 126240381 126240605 -155953059 - MIR SINE MIR -3 259 5 25 83 0 0 chr1 126241447 126241507 -155952157 + AT_rich Low_complexity Low_complexity 1 60 0 2185 112 0 3 chr1 126242741 126243046 -155950618 + AluSg SINE Alu 1 304 -6 25 51 0 0 chr1 126244124 126244163 -155949501 + AT_rich Low_complexity Low_complexity 1 39 0 1366 143 3 159 chr1 126244937 126245329 -155948335 - AluJo SINE Alu 0 336 1 26 0 0 0 chr1 126246016 126246042 -155947622 + AT_rich Low_complexity Low_complexity 1 26 0 1589 134 47 22 chr1 126247694 126247969 -155945695 + AluJo SINE Alu 4 285 -27 237 130 52 43 chr1 126247971 126248086 -155945578 + GA-rich Low_complexity Low_complexity 3 118 0 360 324 128 47 chr1 126248088 126248239 -155945425 - L2 LINE L2 -337 2977 2840 2033 128 6 10 chr1 126248239 126248552 -155945112 + AluSx SINE Alu 1 312 0 360 324 128 47 chr1 126248552 126248907 -155944757 - L2 LINE L2 -474 2840 2430 221 257 135 14 chr1 126249100 126249174 -155944490 - MIR3 SINE MIR -13 195 113 22 70 0 0 chr1 126249639 126249682 -155943982 + AT_rich Low_complexity Low_complexity 1 43 0 1943 119 0 41 chr1 126249885 126250208 -155943456 - AluSp SINE Alu 0 311 1 631 282 10 20 chr1 126250965 126251160 -155942504 - MIR SINE MIR -3 259 67 2352 97 0 3 chr1 126251190 126251500 -155942164 + AluSq SINE Alu 1 309 -4 200 301 55 27 chr1 126251524 126251597 -155942067 - MIR SINE MIR -140 122 48 3457 261 104 57 chr1 126251658 126253231 -155940433 - L2 LINE L2 -42 3271 1620 1980 89 31 57 chr1 126254705 126254876 -155938788 - L1MA3 LINE L1 0 6305 6146 1669 164 20 10 chr1 126254876 126255168 -155938496 - AluJo SINE Alu -11 301 7 1980 89 31 57 chr1 126255168 126255345 -155938319 - L1MA3 LINE L1 -159 6146 5966 1633 142 4 0 chr1 126255431 126255677 -155937987 + AluJb SINE Alu 66 312 0 23 54 0 0 chr1 126255750 126255787 -155937877 + AT_rich Low_complexity Low_complexity 1 37 0 1359 148 30 22 chr1 126257491 126257721 -155935943 + AluJb SINE Alu 67 298 -14 186 133 0 0 chr1 126257731 126257761 -155935903 + (A)n Simple_repeat Simple_repeat 1 30 0 844 366 82 19 chr1 126258123 126258659 -155935005 + L3 LINE CR1 263 832 -745 497 240 170 35 chr1 126258812 126258983 -155934681 + MIR SINE MIR 10 203 -59 231 264 176 11 chr1 126259638 126259729 -155933935 + L3 LINE CR1 1215 1320 -257 2466 226 53 7 chr1 126259919 126260481 -155933183 + MER92B LTR ERV1 1 588 -48 367 289 81 34 chr1 126261074 126261153 -155932511 + L3 LINE CR1 1411 1485 -92 1547 216 27 19 chr1 126261153 126261523 -155932141 + MLT1A2 LTR MaLR 2 374 0 367 289 81 34 chr1 126261523 126261592 -155932072 + L3 LINE CR1 1485 1566 -11 1410 180 83 18 chr1 126261879 126262157 -155931507 + AluJo SINE Alu 1 296 -16 22 0 0 0 chr1 126262902 126262924 -155930740 + AT_rich Low_complexity Low_complexity 1 22 0 6941 125 49 18 chr1 126265422 126266614 -155927050 + Tigger3b DNA MER2_type 2 1230 -1 3130 148 25 13 chr1 126267947 126268469 -155925195 + MER50 LTR ERV1 182 709 -25 4543 141 19 1 chr1 126268513 126269213 -155924451 + MER50-int LTR ERV1 4 715 -6490 2117 119 33 12 chr1 126269213 126269549 -155924115 + MER61A LTR ERV1 1 343 0 4017 124 90 35 chr1 126269549 126270285 -155923379 + MER61A-int LTR ERV1 1 776 -4441 * 13273 86 16 12 chr1 126270279 126272254 -155921410 + MER61A-int LTR ERV1 1320 3347 -1870 1551 181 7 17 chr1 126272701 126272988 -155920676 + AluSx SINE Alu 12 295 -17 1708 148 7 39 chr1 126273007 126273312 -155920352 + AluJo SINE Alu 18 312 0 581 135 0 0 chr1 126273678 126273767 -155919897 - AluSg SINE Alu -221 89 1 29 47 0 0 chr1 126274275 126274318 -155919346 + AT_rich Low_complexity Low_complexity 1 43 0 2177 108 0 0 chr1 126274354 126274683 -155918981 - AluSc SINE Alu 0 329 1 23 0 0 0 chr1 126274855 126274878 -155918786 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr1 126274930 126274965 -155918699 + AT_rich Low_complexity Low_complexity 1 35 0 609 335 74 6 chr1 126274980 126275317 -155918347 - L2 LINE L2 -255 3058 2702 4823 202 42 34 chr1 126275336 126277117 -155916547 - L1MD2 LINE L1 0 6359 4580 1220 133 0 11 chr1 126277117 126277297 -155916367 - MER4A LTR ERV1 0 664 487 6507 101 4 21 chr1 126277333 126278286 -155915378 - MER11C LTR ERVK -14 1057 121 257 271 14 0 chr1 126278344 126278414 -155915250 + MIR SINE MIR 85 155 -107 994 66 0 0 chr1 126278537 126278659 -155915005 - MER11B LTR ERVK -1114 122 1 594 144 5 142 chr1 126278659 126278849 -155914815 - MER4A LTR ERV1 -169 495 274 261 139 23 0 chr1 126278950 126278993 -155914671 - MER4A LTR ERV1 -365 299 256 * 639 131 0 10 chr1 126278988 126279087 -155914577 - MER4A LTR ERV1 -566 98 1 2356 232 36 7 chr1 126279087 126279695 -155913969 - L1MD2 LINE L1 -1563 4583 3958 427 289 80 25 chr1 126279715 126279916 -155913748 - L2 LINE L2 -623 2691 2480 589 297 71 53 chr1 126280001 126280338 -155913326 - MLT1J LTR MaLR -69 442 100 462 324 89 23 chr1 126280551 126280810 -155912854 - L2 LINE L2 -1145 2169 1894 337 203 28 65 chr1 126281578 126281696 -155911968 - MLT1J LTR MaLR -303 208 110 262 310 18 26 chr1 126281786 126281899 -155911765 - L2 LINE L2 -1411 1903 1792 222 286 0 0 chr1 126281938 126282008 -155911656 + L2 LINE L2 1700 1769 -1545 188 222 42 56 chr1 126282023 126282095 -155911569 - L2 LINE L2 -1639 1675 1605 387 209 98 20 chr1 126282135 126282273 -155911391 + MLT2F LTR ERVL 255 661 -2 765 213 92 0 chr1 126282453 126282627 -155911037 + MER63A DNA MER1_type 1 190 -20 585 137 11 0 chr1 126283144 126283263 -155910401 + FLAM_C SINE Alu 23 142 0 4226 165 55 35 chr1 126283305 126284221 -155909443 + L1MB5 LINE L1 4832 5777 -397 2065 146 0 0 chr1 126284221 126284523 -155909141 + AluSx SINE Alu 11 312 0 4226 165 55 35 chr1 126284523 126284924 -155908740 + L1MB5 LINE L1 5777 6168 -6 2036 130 0 0 chr1 126285743 126286049 -155907615 + AluSx SINE Alu 1 306 0 544 214 8 8 chr1 126286072 126286189 -155907475 + FLAM_A SINE Alu 11 127 -15 427 250 10 0 chr1 126286663 126286759 -155906905 + L2 LINE L2 3217 3313 0 257 385 83 19 chr1 126286938 126287094 -155906570 + L2 LINE L2 3099 3264 -8 1055 188 0 6 chr1 126288402 126288583 -155905081 + AluJb SINE Alu 129 308 -4 442 259 76 32 chr1 126288927 126289085 -155904579 + LTR67 LTR ERVL 373 537 -20 234 226 0 19 chr1 126289205 126289258 -155904406 + MER5B DNA MER1_type 1 52 -126 343 281 91 16 chr1 126289299 126289420 -155904244 - L2 LINE L2 0 3272 3143 31 68 0 0 chr1 126289456 126289515 -155904149 + AT_rich Low_complexity Low_complexity 1 59 0 700 280 152 0 chr1 126289627 126289877 -155903787 + Charlie2a DNA MER1_type 187 474 -2388 * 845 148 172 19 chr1 126289875 126290131 -155903533 + Charlie2a DNA MER1_type 733 1027 -1835 1648 201 0 7 chr1 126290169 126290458 -155903206 + AluJo SINE Alu 2 288 -24 249 33 0 0 chr1 126290464 126290494 -155903170 + (CA)n Simple_repeat Simple_repeat 2 31 0 323 287 23 0 chr1 126290495 126290582 -155903082 + L1MC4 LINE L1 6615 6703 -1339 * 369 278 0 0 chr1 126290504 126290594 -155903070 - L1MC4 LINE L1 -1339 6703 6614 8073 42 2 130 chr1 126340777 126342058 -155851606 + SVA Other Other 269 1385 -1 180 0 0 0 chr1 126342433 126342453 -155851211 + (TAA)n Simple_repeat Simple_repeat 2 21 0 771 255 127 55 chr1 126342454 126342870 -155850794 + MLT1H LTR MaLR 104 549 0 802 242 90 16 chr1 126343011 126343255 -155850409 + MIR SINE MIR 1 262 0 243 113 48 0 chr1 126343339 126343401 -155850263 + (TA)n Simple_repeat Simple_repeat 1 65 0 1974 129 7 4 chr1 126343442 126343714 -155849950 + AluSx SINE Alu 1 273 -39 532 153 23 4 chr1 126343736 126343847 -155849817 - L1MB7 LINE L1 -25 6149 6037 1388 158 0 5 chr1 126344340 126344561 -155849103 - AluJo SINE Alu -6 306 87 1982 142 23 13 chr1 126345479 126345782 -155847882 - AluSx SINE Alu -6 306 1 2572 115 120 5 chr1 126346051 126346435 -155847229 + MSTA LTR MaLR 1 428 0 287 233 156 0 chr1 126346602 126346692 -155846972 + MER46C DNA MER2_type 1 104 -234 492 123 0 0 chr1 126346692 126346773 -155846891 + L1M4 LINE L1 4963 5043 -1103 870 259 28 5 chr1 126346788 126347000 -155846664 + MER20 DNA MER1_type 2 218 -1 467 133 48 12 chr1 126348060 126348143 -155845521 - L1MC1 LINE L1 -3 6330 6245 1996 206 45 35 chr1 126348174 126348636 -155845028 - MLT1C LTR MaLR 0 467 1 434 182 13 0 chr1 126349834 126349911 -155843753 + L1M3 LINE L1 5627 5704 -479 558 192 0 42 chr1 126349911 126350031 -155843633 - LTR38 LTR ERV1 0 556 442 1708 151 4 0 chr1 126350049 126350300 -155843364 + MER4B-int LTR ERV1 1 252 -1534 9623 114 49 38 chr1 126350311 126350731 -155842933 + MER4B-int LTR ERV1 388 802 -3269 6409 151 56 34 chr1 126350731 126351451 -155842213 + LTR57-int LTR ERVL 318 1080 -4263 1727 179 10 3 chr1 126351451 126351741 -155841923 + AluJo SINE Alu 1 292 -20 6409 151 56 34 chr1 126351741 126352301 -155841363 + LTR57-int LTR ERVL 1080 1626 -3717 9623 114 49 38 chr1 126352301 126352734 -155840930 + MER4B-int LTR ERV1 802 1229 -2842 2484 80 0 0 chr1 126352734 126353033 -155840631 - AluY SINE Alu -12 299 1 9623 114 49 38 chr1 126353033 126353088 -155840576 + MER4B-int LTR ERV1 1229 4071 0 29721 105 13 44 chr1 126353094 126354369 -155839295 + L1PA8 LINE L1 4 1317 -5170 7639 49 5 14 chr1 126354369 126355925 -155837739 + SVA Other Other 1 1386 0 29721 105 13 44 chr1 126355925 126356490 -155837174 + L1PA8 LINE L1 1317 1898 -4589 186 43 0 0 chr1 126356490 126356513 -155837151 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2298 99 0 0 chr1 126356523 126356872 -155836792 + AluSp SINE Alu 1 349 0 29721 105 13 44 chr1 126356872 126360770 -155832894 + L1PA8 LINE L1 1907 5925 -562 2207 92 0 30 chr1 126360770 126361074 -155832590 + AluY SINE Alu 3 297 -14 29721 105 13 44 chr1 126361074 126361547 -155832117 + L1PA8 LINE L1 5925 6128 -359 2285 114 3 0 chr1 126361547 126361854 -155831810 + AluSp SINE Alu 1 308 -5 29721 105 13 44 chr1 126361854 126362202 -155831462 + L1PA8 LINE L1 6128 6485 -2 1044 161 85 59 chr1 126362219 126362576 -155831088 + MER4B-int LTR ERV1 2348 3730 -2868 1161 178 38 24 chr1 126362613 126362900 -155830764 + MER4B-int LTR ERV1 3731 4021 -2577 453 176 72 52 chr1 126362883 126363036 -155830628 + MER4B-int LTR ERV1 4578 4733 -1865 * 654 195 47 59 chr1 126363164 126363333 -155830331 + MER4B-int LTR ERV1 3787 3953 -4167 379 187 159 0 chr1 126363533 126363666 -155829998 + MER4B-int LTR ERV1 3951 6143 -615 * 1574 185 103 3 chr1 126363659 126363999 -155829665 + MER4B-int LTR ERV1 6376 6749 -9 754 151 79 7 chr1 126364006 126364145 -155829519 + LTR38 LTR ERV1 408 556 0 2866 146 50 0 chr1 126364145 126364605 -155829059 + L1MB3 LINE L1 5701 6183 0 2348 81 13 0 chr1 126364620 126364927 -155828737 + AluSx SINE Alu 1 311 -1 224 349 23 53 chr1 126366295 126366427 -155827237 - MIR3 SINE MIR -78 130 3 1657 177 0 10 chr1 126366814 126366989 -155826675 - AluJb SINE Alu -16 296 124 270 0 0 0 chr1 126366989 126367019 -155826645 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1657 177 0 10 chr1 126367019 126367142 -155826522 - AluJb SINE Alu -188 124 1 241 236 0 18 chr1 126367462 126367517 -155826147 + L2 LINE L2 3214 3267 -5 573 276 161 18 chr1 126367788 126368074 -155825590 + L3 LINE CR1 1232 1558 -19 23 54 0 0 chr1 126368517 126368554 -155825110 + AT_rich Low_complexity Low_complexity 1 37 0 4993 48 8 2 chr1 126368624 126369210 -155824454 - L1PA6 LINE L1 0 6154 5565 862 210 109 22 chr1 126369771 126370047 -155823617 + HAL1 LINE L1 2205 2504 -3 1641 149 8 19 chr1 126370114 126370382 -155823282 + AluJb SINE Alu 36 300 -12 201 282 173 27 chr1 126370391 126370501 -155823163 - L2 LINE L2 -9 3304 3179 369 304 120 31 chr1 126370876 126371067 -155822597 + MIR SINE MIR 42 249 -13 25 0 0 0 chr1 126371399 126371424 -155822240 + AT_rich Low_complexity Low_complexity 1 25 0 180 125 0 0 chr1 126372574 126372606 -155821058 + (T)n Simple_repeat Simple_repeat 1 32 0 251 254 18 0 chr1 126373921 126373976 -155819688 + MER5A DNA MER1_type 86 141 -48 278 217 446 11 chr1 126374301 126374476 -155819188 - MIR SINE MIR 0 262 12 277 287 81 62 chr1 126374719 126374928 -155818736 - MLT1L LTR MaLR -167 448 236 251 195 247 0 chr1 126374982 126375059 -155818605 - MLT1L LTR MaLR -518 97 2 334 219 41 116 chr1 126375173 126375319 -155818345 + LTR67 LTR ERVL 5 139 -418 2146 114 13 0 chr1 126375471 126375769 -155817895 - AluSx SINE Alu -10 302 1 329 256 94 6 chr1 126376195 126376355 -155817309 - L1ME3A LINE L1 -220 5950 5777 26 30 0 0 chr1 126376375 126376408 -155817256 + AT_rich Low_complexity Low_complexity 1 33 0 377 281 78 7 chr1 126376721 126376998 -155816666 + HsTC2 DNA Tc2 3 1306 -419 976 261 27 1 chr1 126377000 126377254 -155816410 - MLT1E1 LTR MaLR 0 654 325 1328 73 0 45 chr1 126377309 126377486 -155816178 - AluSp SINE Alu -12 301 133 821 191 156 26 chr1 126377486 126377717 -155815947 - MLT1E1 LTR MaLR -389 265 5 446 325 0 0 chr1 126377720 126377846 -155815818 + HsTC2 DNA Tc2 1298 1599 -299 240 207 155 0 chr1 126377860 126377918 -155815746 + L1MD3 LINE L1 7175 7241 -754 1383 191 84 30 chr1 126377922 126378314 -155815350 - MLT1C LTR MaLR 0 390 6 1651 189 34 159 chr1 126378323 126378445 -155815219 + L1MC4a LINE L1 7195 7331 -477 2046 127 3 0 chr1 126378445 126378728 -155814936 + AluSx SINE Alu 1 284 -28 1651 189 34 159 chr1 126378728 126378985 -155814679 + L1MC4a LINE L1 7331 7448 -360 1681 120 0 0 chr1 126378985 126379219 -155814445 - AluSq SINE Alu -79 234 1 1651 189 34 159 chr1 126379219 126379540 -155814124 + L1MC4a LINE L1 7448 7808 0 732 167 83 36 chr1 126379807 126379936 -155813728 + HsTC2 DNA Tc2 1606 1748 -150 1961 136 10 7 chr1 126379936 126380231 -155813433 + AluJb SINE Alu 1 296 -16 732 167 83 36 chr1 126380231 126380293 -155813371 + HsTC2 DNA Tc2 1748 1806 -92 2677 86 18 44 chr1 126380293 126380510 -155813154 - THE1C LTR MaLR 0 375 171 1390 152 21 113 chr1 126380510 126380858 -155812806 + AluYb8 SINE Alu 1 318 0 2677 86 18 44 chr1 126380858 126381025 -155812639 - THE1C LTR MaLR -204 171 1 10718 117 6 59 chr1 126381026 126382691 -155810973 - THE1C-int LTR MaLR -1 1579 3 2670 120 13 16 chr1 126382693 126383069 -155810595 - THE1C LTR MaLR 0 375 1 4134 53 0 4 chr1 126383122 126383608 -155810056 - L1PA5 LINE L1 0 6154 5671 329 299 0 23 chr1 126383694 126383781 -155809883 - L2 LINE L2 0 3272 3188 440 291 58 11 chr1 126383859 126384090 -155809574 - L2 LINE L2 -259 3054 2772 1630 190 14 0 chr1 126384573 126384857 -155808807 - AluJb SINE Alu -24 288 1 21 0 0 0 chr1 126384955 126384976 -155808688 + AT_rich Low_complexity Low_complexity 1 21 0 1069 83 0 0 chr1 126386004 126386136 -155807528 + AluSp SINE Alu 1 132 -181 2316 85 3 3 chr1 126386139 126386432 -155807232 + AluSg SINE Alu 1 293 -17 208 280 27 53 chr1 126386890 126386965 -155806699 + L2 LINE L2 3150 3222 -50 349 261 11 0 chr1 126389904 126389996 -155803668 - L1MB3 LINE L1 -7 6176 6084 957 180 160 4 chr1 126390655 126390929 -155802735 + MER33 DNA MER1_type 1 363 0 1732 95 0 17 chr1 126391593 126391825 -155801839 + AluSx SINE Alu 1 228 -84 1610 134 53 46 chr1 126391966 126392250 -155801414 - AluJo SINE Alu -26 286 1 240 325 17 50 chr1 126393361 126393481 -155800183 + MER5B DNA MER1_type 2 117 -61 1380 176 97 4 chr1 126393625 126393903 -155799761 - AluJb SINE Alu -8 304 1 271 285 13 25 chr1 126394311 126394422 -155799242 - MIR SINE MIR -7 201 88 211 302 31 31 chr1 126394827 126394956 -155798708 + L2 LINE L2 2804 2932 -381 255 168 75 103 chr1 126397380 126397487 -155796177 + L1ME4a LINE L1 5977 6080 -41 2219 117 0 0 chr1 126398008 126398307 -155795357 - AluSg SINE Alu -10 300 2 190 318 0 0 chr1 126399091 126399154 -155794510 + L3 LINE CR1 449 511 -1066 347 237 32 54 chr1 126399248 126399341 -155794323 - MIR SINE MIR -19 243 153 293 297 42 25 chr1 126400182 126400300 -155793364 + L2 LINE L2 3192 3311 -2 235 338 7 58 chr1 126400284 126400423 -155793241 + MIR3 SINE MIR 9 140 -68 * 366 303 113 7 chr1 126400554 126400828 -155792836 - L1ME LINE L1 -367 5754 5452 350 234 126 27 chr1 126400957 126401068 -155792596 - L2 LINE L2 -2 3311 3190 1580 171 54 7 chr1 126401288 126401586 -155792078 - AluJb SINE Alu 0 312 1 1963 117 7 37 chr1 126402383 126402683 -155790981 + AluSx SINE Alu 1 291 -21 283 143 0 0 chr1 126402687 126402729 -155790935 + Alu SINE Alu 248 289 -11 958 254 184 39 chr1 126402990 126403290 -155790374 - Charlie7 DNA MER1_type -1873 739 484 1821 139 24 0 chr1 126403290 126403577 -155790087 - AluSg SINE Alu -16 294 1 958 254 184 39 chr1 126403577 126403897 -155789767 - Charlie7 DNA MER1_type -2128 484 29 284 315 54 0 chr1 126404530 126404622 -155789042 + MER5A DNA MER1_type 9 105 -84 647 222 138 0 chr1 126404662 126404829 -155788835 + MIR SINE MIR 37 226 -36 2505 54 0 0 chr1 126406555 126406849 -155786815 + AluY SINE Alu 1 294 -17 1937 152 6 22 chr1 126406908 126407224 -155786440 + AluJb SINE Alu 1 311 -1 341 216 103 52 chr1 126407356 126407453 -155786211 - MIR SINE MIR -75 187 86 882 207 45 0 chr1 126407535 126407714 -155785950 - MER5A DNA MER1_type -2 187 1 427 297 77 44 chr1 126409710 126409983 -155783681 - L2 LINE L2 -767 2547 2266 203 363 97 0 chr1 126410866 126410979 -155782685 + L2 LINE L2 3147 3270 -2 2422 86 0 0 chr1 126412336 126412640 -155781024 - AluSc SINE Alu -5 304 1 402 109 0 0 chr1 126413646 126413701 -155779963 - MER30B DNA MER1_type -135 55 1 757 133 108 66 chr1 126413711 126413777 -155779887 + MER30B DNA MER1_type 58 120 -110 1990 128 11 0 chr1 126413777 126414058 -155779606 + AluSx SINE Alu 6 289 -23 757 133 108 66 chr1 126414058 126414157 -155779507 + MER30B DNA MER1_type 120 230 0 1010 172 72 43 chr1 126415771 126415980 -155777684 - MER20 DNA MER1_type -1 218 4 21 0 0 0 chr1 126416350 126416371 -155777293 + AT_rich Low_complexity Low_complexity 1 21 0 2295 89 0 3 chr1 126416488 126416780 -155776884 + AluY SINE Alu 2 292 -19 214 257 107 4 chr1 126417033 126417141 -155776523 + MIR SINE MIR 37 144 -64 236 185 233 68 chr1 126417666 126417812 -155775852 + MIR SINE MIR 80 249 -13 221 303 66 0 chr1 126417897 126417973 -155775691 - L2 LINE L2 -1038 2276 2196 727 30 59 10 chr1 126418065 126418166 -155775498 - HY1 scRNA scRNA -6 106 1 650 276 50 67 chr1 126419922 126419953 -155773711 + MIR SINE MIR 4 34 -228 1862 169 3 0 chr1 126419953 126420249 -155773415 + AluJb SINE Alu 3 299 -13 650 276 50 67 chr1 126420249 126420456 -155773208 + MIR SINE MIR 34 238 -24 660 221 129 6 chr1 126420758 126420921 -155772743 + MER5A DNA MER1_type 1 183 -6 840 180 19 19 chr1 126420997 126421158 -155772506 + AluJb SINE Alu 135 295 -17 429 295 129 36 chr1 126421339 126421617 -155772047 - L2 LINE L2 -25 3288 2985 989 50 0 0 chr1 126422729 126422848 -155770816 + AluSg SINE Alu 1 119 -191 26 30 0 0 chr1 126422848 126422881 -155770783 + AT_rich Low_complexity Low_complexity 1 33 0 326 266 119 18 chr1 126423416 126423525 -155770139 + MIR SINE MIR 29 148 -114 2081 128 3 3 chr1 126423703 126424001 -155769663 + AluSx SINE Alu 1 298 -14 1864 129 21 4 chr1 126424001 126424279 -155769385 + AluJb SINE Alu 1 284 -28 561 204 95 7 chr1 126424513 126424660 -155769004 + MER58B DNA MER1_type 182 341 0 1354 195 13 0 chr1 126426617 126426853 -155766811 - AluJb SINE Alu -70 242 4 23 0 0 0 chr1 126427871 126427894 -155765770 + AT_rich Low_complexity Low_complexity 1 23 0 366 296 55 34 chr1 126430242 126430456 -155763208 + MIR SINE MIR 5 220 -42 2207 86 7 0 chr1 126430562 126430869 -155762795 + AluSg SINE Alu 2 310 0 29 0 0 0 chr1 126431068 126431097 -155762567 + AT_rich Low_complexity Low_complexity 1 29 0 532 242 38 0 chr1 126431106 126431238 -155762426 - L1ME3 LINE L1 -7 6155 6019 1395 145 93 48 chr1 126432422 126432712 -155760952 + AluJo SINE Alu 1 303 -9 420 298 61 55 chr1 126432784 126432965 -155760699 - MIR3 SINE MIR -4 204 23 703 220 187 9 chr1 126432968 126433182 -155760482 + MIR SINE MIR 1 252 -10 201 327 18 0 chr1 126433325 126433380 -155760284 + L2 LINE L2 3209 3264 -8 678 178 164 0 chr1 126433921 126434073 -155759591 - MER3 DNA MER1_type -79 130 1 2241 97 0 22 chr1 126434250 126434570 -155759094 - AluSq SINE Alu 0 313 1 1569 179 25 11 chr1 126434578 126434863 -155758801 - AluJb SINE Alu -23 289 1 294 189 0 32 chr1 126435289 126435384 -155758280 + CT-rich Low_complexity Low_complexity 3 94 0 855 165 0 8 chr1 126435385 126435518 -155758146 - AluJ SINE Alu -46 266 135 526 115 51 0 chr1 126435520 126435676 -155757988 + (TA)n Simple_repeat Simple_repeat 2 165 0 2168 111 0 0 chr1 126435695 126435975 -155757689 - AluSg SINE Alu -30 280 1 871 161 0 7 chr1 126435975 126436112 -155757552 - AluJ SINE Alu -176 136 1 2089 142 7 0 chr1 126436422 126436731 -155756933 - AluSx SINE Alu -1 311 1 226 278 19 0 chr1 126439024 126439078 -155754586 + tRNA-Ile-ATT tRNA tRNA 5 59 -18 1132 107 13 0 chr1 126440097 126440256 -155753408 + AluSg/x SINE Alu 132 292 -20 208 354 76 0 chr1 126441715 126441794 -155751870 + MIR3 SINE MIR 103 187 -21 21 0 0 0 chr1 126442020 126442041 -155751623 + AT_rich Low_complexity Low_complexity 1 21 0 247 209 93 58 chr1 126443527 126443613 -155750051 - L2 LINE L2 -36 3277 3189 263 255 223 0 chr1 126443900 126444058 -155749606 - MIR SINE MIR -47 215 18 1816 139 36 10 chr1 126444079 126444382 -155749282 - AluJb SINE Alu -1 311 1 1585 153 47 22 chr1 126444618 126444893 -155748771 + AluJo SINE Alu 1 282 -30 761 256 68 0 chr1 126445091 126445282 -155748382 + MIR SINE MIR 4 207 -55 21 36 0 0 chr1 126445286 126445314 -155748350 + AT_rich Low_complexity Low_complexity 1 28 0 1226 71 19 0 chr1 126446294 126446448 -155747216 + L1PA7 LINE L1 5995 6151 -3 623 276 106 22 chr1 126446670 126447123 -155746541 - L1ME4a LINE L1 0 6121 5631 2285 98 0 0 chr1 126447123 126447409 -155746255 + AluSx SINE Alu 6 291 -21 181 315 150 8 chr1 126447410 126447537 -155746127 - L2 LINE L2 -562 2752 2608 575 264 37 116 chr1 126447558 126447628 -155746036 - MLT1J LTR MaLR -2 509 435 2527 88 0 0 chr1 126447628 126447935 -155745729 - AluSc SINE Alu -2 307 1 575 264 37 116 chr1 126447935 126447961 -155745703 - MLT1J LTR MaLR -76 435 409 1972 163 10 7 chr1 126447961 126448267 -155745397 + 7SLRNA srpRNA srpRNA 1 307 -13 575 264 37 116 chr1 126448267 126448706 -155744958 - MLT1J LTR MaLR -102 409 15 240 281 52 65 chr1 126448716 126448869 -155744795 - L2 LINE L2 -878 2436 2286 2402 62 0 7 chr1 126449177 126449468 -155744196 + AluY SINE Alu 1 289 -22 315 161 0 0 chr1 126449468 126449524 -155744140 + (TA)n Simple_repeat Simple_repeat 1 56 0 432 316 107 17 chr1 126449556 126449733 -155743931 + MIR SINE MIR 20 212 -50 28 29 0 0 chr1 126450875 126450910 -155742754 + AT_rich Low_complexity Low_complexity 1 35 0 373 271 71 79 chr1 126450958 126451012 -155742652 - L1ME4a LINE L1 -14 6107 6054 2058 154 0 0 chr1 126451012 126451324 -155742340 - AluJo SINE Alu 0 312 1 373 271 71 79 chr1 126451324 126451644 -155742020 - L1ME4a LINE L1 -67 6054 5735 2182 84 12 59 chr1 126451644 126451966 -155741698 - AluY SINE Alu -4 307 1 373 271 71 79 chr1 126451966 126452081 -155741583 - L1ME4a LINE L1 -386 5735 5621 203 184 0 0 chr1 126452645 126452683 -155740981 + (TA)n Simple_repeat Simple_repeat 1 38 0 474 18 0 0 chr1 126452713 126452768 -155740896 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1747 141 31 0 chr1 126452779 126453035 -155740629 - AluSx SINE Alu -48 264 1 2088 104 21 0 chr1 126453172 126453482 -155740182 - AluSx SINE Alu 0 316 1 314 246 36 58 chr1 126453778 126453916 -155739748 - MIR SINE MIR -54 208 74 2272 102 3 13 chr1 126453929 126454242 -155739422 - AluSx SINE Alu -2 310 1 1616 153 0 50 chr1 126454332 126454614 -155739050 - AluJo SINE Alu -44 268 1 321 261 8 67 chr1 126455576 126455695 -155737969 - MIR SINE MIR -44 218 107 1994 159 0 0 chr1 126456053 126456349 -155737315 - AluSx SINE Alu -14 298 3 2132 130 0 0 chr1 126457458 126457751 -155735913 + AluSx SINE Alu 1 293 -19 205 279 0 33 chr1 126458485 126458546 -155735118 - MIR SINE MIR -16 246 188 230 274 0 16 chr1 126459595 126459657 -155734007 + GA-rich Low_complexity Low_complexity 2 62 0 323 323 94 0 chr1 126460520 126460616 -155733048 - L2 LINE L2 -21 3251 3147 25 51 0 0 chr1 126461717 126461756 -155731908 + AT_rich Low_complexity Low_complexity 1 39 0 244 376 50 58 chr1 126461838 126462134 -155731530 + L2 LINE L2 2516 2808 -506 1868 154 0 3 chr1 126462134 126462432 -155731232 - AluSx SINE Alu -15 297 1 244 376 50 58 chr1 126462432 126462600 -155731064 + L2 LINE L2 2808 2976 -338 397 305 94 30 chr1 126462775 126463008 -155730656 - L1ME4a LINE L1 -284 5837 5590 2668 27 0 0 chr1 126463008 126463304 -155730360 + AluY SINE Alu 1 296 -15 1435 162 52 58 chr1 126464006 126464262 -155729402 + L1MC1 LINE L1 6008 6263 -70 2188 148 3 0 chr1 126464262 126464573 -155729091 - AluSx SINE Alu 0 312 1 1435 162 52 58 chr1 126464573 126464644 -155729020 + L1MC1 LINE L1 6263 6333 0 2161 123 0 3 chr1 126464899 126465201 -155728463 - AluSx SINE Alu -11 301 1 535 326 74 9 chr1 126465711 126465926 -155727738 - MIR SINE MIR -7 255 27 207 363 14 34 chr1 126466609 126466755 -155726909 + MIR SINE MIR 53 195 -67 243 304 157 0 chr1 126466863 126466965 -155726699 + MIR SINE MIR 51 168 -94 699 120 0 0 chr1 126468020 126468128 -155725536 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 762 258 4 69 chr1 126469243 126469503 -155724161 + MIR SINE MIR 15 257 -5 308 288 38 0 chr1 126471288 126471368 -155722296 - MIR SINE MIR -93 115 33 468 323 35 20 chr1 126472826 126473027 -155720637 - MIR SINE MIR 0 262 59 1878 155 0 20 chr1 126473682 126473985 -155719679 - AluJb SINE Alu -15 297 1 1707 170 0 27 chr1 126474428 126474728 -155718936 + AluJo SINE Alu 1 292 -20 330 87 0 0 chr1 126475091 126475137 -155718527 + (GGGTG)n Simple_repeat Simple_repeat 5 50 0 227 285 126 3 chr1 126476481 126476627 -155717037 + MIR SINE MIR 31 192 -67 199 225 6 0 chr1 126476693 126476740 -155716924 + L2 LINE L2 3210 3298 -15 306 0 0 0 chr1 126477331 126477365 -155716299 + (TG)n Simple_repeat Simple_repeat 2 35 0 838 238 108 4 chr1 126477906 126478137 -155715527 - MIR SINE MIR -6 256 2 1999 125 11 0 chr1 126479133 126479420 -155714244 + AluSc SINE Alu 1 290 -19 745 293 165 45 chr1 126479459 126480064 -155713600 - L2 LINE L2 -497 2817 2140 249 313 43 0 chr1 126480121 126480236 -155713428 - MARNA DNA Mariner -11 575 456 477 184 58 0 chr1 126480242 126480329 -155713335 - Tigger5 DNA MER2_type 0 2323 2232 332 180 82 0 chr1 126480310 126480371 -155713293 + Tigger5 DNA MER2_type 2252 2317 -6 * 432 198 0 25 chr1 126480373 126480454 -155713210 - Tigger5 DNA MER2_type -2244 79 1 1542 156 0 118 chr1 126480597 126480766 -155712898 - AluJo SINE Alu -13 299 112 2346 107 0 3 chr1 126480766 126481075 -155712589 - AluSx SINE Alu -4 308 1 1542 156 0 118 chr1 126481075 126481110 -155712554 - AluJo SINE Alu -200 112 74 1990 132 7 7 chr1 126481110 126481425 -155712239 + AluSq SINE Alu 3 317 0 1542 156 0 118 chr1 126481425 126481555 -155712109 - AluJo SINE Alu -238 74 1 1543 158 59 7 chr1 126481665 126481937 -155711727 + AluJb SINE Alu 18 303 -9 1899 149 42 36 chr1 126481958 126482293 -155711371 - MER58B DNA MER1_type 0 341 5 1370 205 47 14 chr1 126482908 126483205 -155710459 - AluJo SINE Alu -5 307 1 2412 85 13 0 chr1 126484749 126485054 -155708610 - AluSg SINE Alu 0 310 2 1516 210 7 0 chr1 126485796 126486072 -155707592 + AluJb SINE Alu 1 278 -34 403 143 12 12 chr1 126486072 126486156 -155707508 + GA-rich Low_complexity Low_complexity 1 84 0 2056 113 0 3 chr1 126486361 126486667 -155706997 - AluSx SINE Alu 0 305 1 283 86 0 0 chr1 126486847 126486882 -155706782 - U2 snRNA snRNA -153 35 1 538 110 0 27 chr1 126487011 126487084 -155706580 - FLAM_A SINE Alu -26 116 46 927 336 103 28 chr1 126487693 126488402 -155705262 + L2 LINE L2 1294 2055 -1259 22 35 0 0 chr1 126488540 126488569 -155705095 + AT_rich Low_complexity Low_complexity 1 29 0 1589 185 55 97 chr1 126488620 126488835 -155704829 + L1ME3 LINE L1 5374 5596 -566 1950 102 4 0 chr1 126488835 126489090 -155704574 + AluSx SINE Alu 1 256 -56 1589 185 55 97 chr1 126489090 126489190 -155704474 + L1ME3 LINE L1 5596 5699 -463 2370 94 0 3 chr1 126489190 126489498 -155704166 + AluSc SINE Alu 1 307 -2 1589 185 55 97 chr1 126489498 126489512 -155704152 + L1ME3 LINE L1 5699 5712 -450 1702 186 0 23 chr1 126489512 126489819 -155703845 + AluJb SINE Alu 1 300 -12 1589 185 55 97 chr1 126489819 126489976 -155703688 + L1ME3 LINE L1 5712 5854 -308 263 71 24 0 chr1 126489977 126490019 -155703645 + (TA)n Simple_repeat Simple_repeat 1 43 0 2317 104 0 0 chr1 126490102 126490401 -155703263 + AluSx SINE Alu 1 299 -13 186 171 49 0 chr1 126490692 126490733 -155702931 + MIR SINE MIR 112 154 -108 978 243 133 56 chr1 126490739 126491205 -155702459 + MLT1J LTR MaLR 1 502 -9 365 242 40 0 chr1 126491409 126491430 -155702234 - L1ME4a LINE L1 -13 6108 6089 2287 92 0 10 chr1 126491430 126491735 -155701929 - AluY SINE Alu -9 302 1 365 242 40 0 chr1 126491735 126491837 -155701827 - L1ME4a LINE L1 -32 6089 5980 317 271 155 10 chr1 126491920 126492129 -155701535 - L1ME4a LINE L1 -312 5809 5599 1996 130 7 7 chr1 126492477 126492769 -155700895 + AluSx SINE Alu 1 292 -20 1429 152 9 9 chr1 126492818 126493042 -155700622 - MER2 DNA MER2_type 0 345 122 1110 146 12 0 chr1 126493059 126493223 -155700441 + FAM SINE Alu 1 49 0 636 175 8 25 chr1 126493244 126493364 -155700300 - MER2 DNA MER2_type -226 119 2 228 193 91 34 chr1 126493632 126493720 -155699944 - L1MC/D LINE L1 -1921 5887 5795 323 300 120 10 chr1 126493723 126493823 -155699841 + MER91A DNA MER1_type 1 111 -85 2107 113 7 0 chr1 126494127 126494409 -155699255 - AluSx SINE Alu -8 304 21 1560 176 81 0 chr1 126494411 126494579 -155699085 - AluJo SINE Alu -5 307 154 303 28 0 0 chr1 126494579 126494615 -155699049 + (TG)n Simple_repeat Simple_repeat 2 37 0 1560 176 81 0 chr1 126494615 126494730 -155698934 - AluJo SINE Alu -158 154 1 208 0 0 59 chr1 126494737 126494771 -155698893 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1093 104 0 0 chr1 126494783 126494927 -155698737 - AluSg/x SINE Alu -36 276 133 2476 67 0 32 chr1 126495187 126495503 -155698161 - AluY SINE Alu -5 306 1 2268 108 0 3 chr1 126495550 126495846 -155697818 - AluSq SINE Alu -18 295 1 311 267 127 55 chr1 126495889 126496054 -155697610 + L1ME4a LINE L1 5928 6104 -17 1458 174 48 20 chr1 126496213 126496506 -155697158 + AluJo SINE Alu 3 303 -9 2345 105 0 0 chr1 126496632 126496926 -155696738 + AluSq SINE Alu 2 295 -18 377 228 134 122 chr1 126497602 126497778 -155695886 + MIR SINE MIR 3 184 -78 2170 110 7 0 chr1 126497778 126498070 -155695594 + AluSq SINE Alu 1 294 -19 377 228 134 122 chr1 126498070 126498147 -155695517 + MIR SINE MIR 184 259 -3 1075 170 0 0 chr1 126498165 126498324 -155695340 + AluSx SINE Alu 1 159 -153 536 112 79 0 chr1 126498437 126498526 -155695138 + AluSg/x SINE Alu 198 293 -17 260 167 0 0 chr1 126498526 126498580 -155695084 + L1MA7 LINE L1 6238 6291 0 189 0 0 0 chr1 126498693 126498714 -155694950 + (TC)n Simple_repeat Simple_repeat 2 22 0 2051 133 0 7 chr1 126498714 126499008 -155694656 - AluSx SINE Alu -20 292 1 801 233 127 27 chr1 126499098 126499390 -155694274 + Charlie7 DNA MER1_type 31 351 -2261 1158 225 123 36 chr1 126499395 126499659 -155694005 + Charlie7 DNA MER1_type 1482 1722 -890 2499 54 0 3 chr1 126499659 126499956 -155693708 + AluY SINE Alu 1 296 -15 1158 225 123 36 chr1 126499956 126500318 -155693346 + Charlie7 DNA MER1_type 1722 2051 -561 2292 151 10 10 chr1 126500318 126500708 -155692956 - MLT1B LTR MaLR 0 390 1 1158 225 123 36 chr1 126500708 126501001 -155692663 + Charlie7 DNA MER1_type 2051 2543 -69 463 271 161 0 chr1 126501123 126501278 -155692386 + MIR SINE MIR 82 261 -1 679 255 164 9 chr1 126501455 126501686 -155691978 - L2 LINE L2 -2 3311 3045 359 274 35 0 chr1 126501720 126501833 -155691831 - L2 LINE L2 -711 2603 2487 336 276 29 19 chr1 126503029 126503134 -155690530 - MIR SINE MIR -1 261 156 764 222 7 0 chr1 126503174 126503327 -155690337 + MIR SINE MIR 99 252 -10 200 293 57 121 chr1 126503318 126503458 -155690206 - MIR SINE MIR -100 162 32 * 2080 115 7 0 chr1 126503635 126503921 -155689743 + AluSx SINE Alu 1 288 -24 245 95 0 24 chr1 126503921 126503963 -155689701 + (TA)n Simple_repeat Simple_repeat 2 42 0 2425 177 17 0 chr1 126504110 126504529 -155689135 - MSTB LTR MaLR 0 426 1 830 124 47 16 chr1 126504608 126504737 -155688927 - FLAM_C SINE Alu 0 133 1 324 208 125 0 chr1 126505336 126505432 -155688232 + MER112 DNA MER1_type 67 174 -86 778 127 134 0 chr1 126506039 126506173 -155687491 + AluSp SINE Alu 146 297 -16 374 187 29 59 chr1 126506175 126506284 -155687380 + L1M4c LINE L1 980 1193 -5189 2083 122 10 13 chr1 126506284 126506587 -155687077 - AluSq SINE Alu -11 302 1 1759 180 84 127 chr1 126506588 126507093 -155686571 - L1ME LINE L1 -533 5700 5175 2107 149 0 13 chr1 126507093 126507409 -155686255 - AluJb SINE Alu 0 312 1 1759 180 84 127 chr1 126507409 126508071 -155685593 - L1ME LINE L1 -1058 5175 4613 1857 139 27 20 chr1 126508071 126508365 -155685299 + AluSx SINE Alu 1 296 -16 1759 180 84 127 chr1 126508365 126508465 -155685199 - L1ME LINE L1 -1620 4613 4510 1067 129 0 7 chr1 126508487 126508642 -155685022 - AluSx SINE Alu -1 309 156 561 161 0 0 chr1 126508646 126508733 -155684931 + AluJb SINE Alu 29 115 -197 996 118 0 118 chr1 126508745 126508923 -155684741 - AluSx SINE Alu -155 157 1 1756 231 75 42 chr1 126508934 126509198 -155684466 - L1ME LINE L1 -1745 4470 4216 1625 171 26 30 chr1 126509198 126509502 -155684162 - AluJb SINE Alu -9 303 1 1756 231 75 42 chr1 126509502 126509858 -155683806 - L1ME LINE L1 -1999 4216 3816 1956 159 3 0 chr1 126509858 126510159 -155683505 - AluSx SINE Alu -8 304 3 1756 231 75 42 chr1 126510159 126510341 -155683323 - L1ME LINE L1 -2399 3816 3641 546 196 0 0 chr1 126510341 126510443 -155683221 - FRAM SINE Alu -3 173 72 242 218 173 11 chr1 126510443 126510622 -155683042 - L1ME LINE L1 -2890 3325 3118 2354 109 0 0 chr1 126510828 126511140 -155682524 - AluSx SINE Alu 0 312 1 888 168 11 6 chr1 126511214 126511393 -155682271 - L1ME LINE L1 -3284 2931 2752 1221 110 0 0 chr1 126511396 126511559 -155682105 + AluSg/x SINE Alu 145 307 -5 1536 228 72 84 chr1 126511559 126512378 -155681286 - L1MEc LINE L1 -3458 2757 1930 324 48 0 0 chr1 126512378 126512420 -155681244 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 1996 138 17 0 chr1 126512420 126512716 -155680948 - AluSg SINE Alu -4 306 6 1536 228 72 84 chr1 126512716 126513010 -155680654 - L1MEc LINE L1 -4283 1932 1704 1087 205 65 0 chr1 126513012 126513290 -155680374 + MER45B DNA AcHobo 745 1040 0 2401 258 82 61 chr1 126513293 126514086 -155679578 - L1MEc LINE L1 -4699 1697 922 2406 70 3 0 chr1 126514086 126514384 -155679280 - AluY SINE Alu -12 299 1 2401 258 82 61 chr1 126514384 126514477 -155679187 - L1MEc LINE L1 -5474 922 832 1783 150 29 0 chr1 126514477 126514790 -155678874 - AluSx SINE Alu 0 323 3 2401 258 82 61 chr1 126514790 126515531 -155678133 - L1MEc LINE L1 -5564 832 35 240 35 0 0 chr1 126515550 126515579 -155678085 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2007 90 30 11 chr1 126515585 126515853 -155677811 - AluSc SINE Alu -36 273 1 2311 104 0 3 chr1 126516307 126516604 -155677060 + AluSq SINE Alu 1 296 -17 1654 183 41 10 chr1 126517549 126517719 -155675945 - AluJo SINE Alu -13 299 115 216 0 0 0 chr1 126517719 126517743 -155675921 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1654 183 41 10 chr1 126517743 126517862 -155675802 - AluJo SINE Alu -197 115 1 180 0 0 0 chr1 126518283 126518303 -155675361 + (T)n Simple_repeat Simple_repeat 1 20 0 1929 142 7 10 chr1 126519076 126519378 -155674286 + AluSx SINE Alu 3 303 -9 2271 114 3 0 chr1 126520966 126521274 -155672390 + AluSx SINE Alu 2 310 -2 1347 166 73 66 chr1 126521286 126521587 -155672077 + AluJo SINE Alu 1 303 -9 1563 160 21 21 chr1 126521872 126522153 -155671511 + AluSx SINE Alu 23 303 -9 31 0 0 0 chr1 126522162 126522193 -155671471 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 126522763 126522785 -155670879 + AT_rich Low_complexity Low_complexity 1 22 0 238 236 9 127 chr1 126523123 126523233 -155670431 + MER102b DNA MER1_type 232 328 -13 1986 149 0 7 chr1 126523470 126523765 -155669899 + AluJb SINE Alu 1 293 -19 780 163 7 34 chr1 126524597 126524744 -155668920 - FLAM_C SINE Alu 0 143 1 2521 64 0 0 chr1 126527598 126527895 -155665769 + AluY SINE Alu 1 297 -14 2262 96 7 0 chr1 126528279 126528572 -155665092 + AluSg SINE Alu 1 295 -15 2609 74 6 33 chr1 126528700 126529021 -155664643 + THE1A LTR MaLR 2 313 -42 2135 123 3 3 chr1 126529021 126529313 -155664351 - AluSq SINE Alu -21 292 1 2609 74 6 33 chr1 126529313 126529355 -155664309 + THE1A LTR MaLR 313 355 0 2101 143 0 7 chr1 126529471 126529778 -155663886 - AluSx SINE Alu -7 305 1 2529 68 7 0 chr1 126529783 126530092 -155663572 - AluY SINE Alu 0 311 1 226 328 185 11 chr1 126530100 126530289 -155663375 - L3b LINE CR1 -143 1440 1219 318 247 75 0 chr1 126530356 126530449 -155663215 - MIR SINE MIR -55 207 108 279 263 81 10 chr1 126530643 126530742 -155662922 - MIR SINE MIR -33 229 124 2270 88 0 14 chr1 126530859 126531153 -155662511 - AluSc SINE Alu -17 292 3 1933 164 7 3 chr1 126531637 126531935 -155661729 - AluJb SINE Alu -13 299 1 526 261 98 85 chr1 126532580 126532925 -155660739 - L1MC4a LINE L1 -748 5398 5569 2039 118 0 42 chr1 126532925 126533068 -155660596 + AluJb SINE Alu 1 148 -164 2373 101 0 0 chr1 126533068 126533365 -155660299 + AluSg SINE Alu 1 297 -13 2039 118 0 42 chr1 126533365 126533534 -155660130 + AluJb SINE Alu 148 300 -12 526 261 98 85 chr1 126533534 126533938 -155659726 - L1MC4a LINE L1 -576 5570 5172 351 0 0 0 chr1 126534068 126534107 -155659557 + (TG)n Simple_repeat Simple_repeat 2 40 0 2421 80 0 3 chr1 126535168 126535467 -155658197 - AluSg SINE Alu -12 298 1 21 0 0 0 chr1 126536522 126536543 -155657121 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr1 126537371 126537394 -155656270 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 214 238 214 24 chr1 126537415 126537499 -155656165 + MIR SINE MIR 53 152 -110 891 213 113 21 chr1 126537504 126537591 -155656073 + MIR SINE MIR 1 79 -183 1956 113 58 31 chr1 126537591 126537884 -155655780 - AluSx SINE Alu -4 308 8 891 213 113 21 chr1 126537884 126538035 -155655629 + MIR SINE MIR 79 261 -1 313 247 37 0 chr1 126538037 126538118 -155655546 + MIR SINE MIR 177 260 -2 241 330 85 9 chr1 126538181 126538287 -155655377 - L2 LINE L2 -1 3271 3158 502 208 57 99 chr1 126538308 126538500 -155655164 + Charlie8 DNA MER1_type 38 221 -2196 1661 253 78 12 chr1 126538508 126539313 -155654351 + MER45C DNA AcHobo 8 944 -9 582 239 0 8 chr1 126539674 126539808 -155653856 + FLAM_A SINE Alu 1 133 0 1891 121 7 7 chr1 126540075 126540356 -155653308 - AluJb SINE Alu -11 301 21 445 265 18 18 chr1 126541865 126542031 -155651633 - L1ME4a LINE L1 -18 6103 5938 1787 120 51 11 chr1 126542049 126542343 -155651321 + AluJo SINE Alu 1 305 0 240 111 0 0 chr1 126542343 126542379 -155651285 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 2180 77 46 0 chr1 126542458 126542743 -155650921 + AluSx SINE Alu 1 298 -14 305 241 168 36 chr1 126542747 126542884 -155650780 - L1ME4a LINE L1 -2397 5411 5257 1793 181 7 3 chr1 126543022 126543320 -155650344 + AluJo SINE Alu 1 299 -13 2088 45 0 4 chr1 126545755 126545999 -155647665 - L1PA5 LINE L1 0 6154 5912 29 78 0 0 chr1 126546687 126546751 -155646913 + AT_rich Low_complexity Low_complexity 1 64 0 2212 113 0 13 chr1 126546903 126547205 -155646459 + AluSx SINE Alu 1 298 -14 317 285 131 42 chr1 126547211 126547425 -155646239 - L1ME3A LINE L1 -14 6156 5924 2314 256 63 30 chr1 126547448 126548088 -155645576 - L1ME3A LINE L1 -206 5964 5347 2221 114 0 3 chr1 126548088 126548386 -155645278 - AluSx SINE Alu -15 297 1 2314 256 63 30 chr1 126548386 126548412 -155645252 - L1ME3A LINE L1 -823 5347 5323 2405 97 0 0 chr1 126548412 126548723 -155644941 - AluSq SINE Alu -1 312 2 2314 256 63 30 chr1 126548723 126549118 -155644546 - L1ME3A LINE L1 -847 5323 4853 1244 206 101 40 chr1 126549136 126549491 -155644173 - L1MC5 LINE L1 -30 7931 7541 1732 141 44 0 chr1 126549491 126549795 -155643869 - AluJb SINE Alu 0 316 1 1244 206 101 40 chr1 126549795 126549885 -155643779 - L1MC5 LINE L1 -420 7541 7458 216 324 79 72 chr1 126550351 126550382 -155643282 - L2 LINE L2 -7 3265 3236 2633 39 0 10 chr1 126550382 126550687 -155642977 - AluY SINE Alu -9 302 1 216 324 79 72 chr1 126550687 126550794 -155642870 - L2 LINE L2 -36 3236 3126 23 33 0 0 chr1 126551106 126551136 -155642528 + AT_rich Low_complexity Low_complexity 1 30 0 990 282 165 14 chr1 126551545 126551914 -155641750 + L2 LINE L2 2886 3310 -3 402 233 125 17 chr1 126551917 126552037 -155641627 - MIR SINE MIR -6 256 124 1763 158 74 0 chr1 126552098 126552383 -155641281 - AluJo SINE Alu -6 306 1 762 251 116 82 chr1 126552383 126552737 -155640927 - L2 LINE L2 -923 2391 2026 895 153 0 21 chr1 126552753 126552897 -155640767 + FLAM_C SINE Alu 1 141 -2 643 307 54 0 chr1 126552904 126553109 -155640555 - L2 LINE L2 -1278 2036 1821 1887 162 0 7 chr1 126553142 126553450 -155640214 - AluJo SINE Alu -6 306 1 1253 267 74 66 chr1 126553451 126553701 -155639963 + L1ME LINE L1 4643 4889 -1273 2185 107 0 0 chr1 126553701 126554025 -155639639 + AluSx SINE Alu 1 324 0 1253 267 74 66 chr1 126554025 126554620 -155639044 + L1ME LINE L1 4889 5478 -684 1818 168 3 7 chr1 126554620 126554912 -155638752 + AluJo SINE Alu 3 293 -19 1253 267 74 66 chr1 126554912 126555088 -155638576 + L1ME LINE L1 5478 5687 -475 2546 50 0 3 chr1 126555088 126555389 -155638275 - AluY SINE Alu -11 300 1 1253 267 74 66 chr1 126555389 126555471 -155638193 + L1ME LINE L1 5687 5767 -395 1472 203 14 24 chr1 126555485 126555780 -155637884 - AluJb SINE Alu -20 292 1 690 135 120 53 chr1 126556229 126556362 -155637302 + FLAM_C SINE Alu 2 143 0 362 329 55 7 chr1 126556473 126556619 -155637045 - MIR3 SINE MIR -29 179 27 341 296 35 17 chr1 126556772 126556887 -155636777 + MIR SINE MIR 41 157 -105 812 150 0 17 chr1 126556991 126557111 -155636553 + FLAM_C SINE Alu 1 118 -25 1395 164 47 66 chr1 126558539 126558684 -155634980 + AluJo SINE Alu 1 147 -207 2208 122 0 13 chr1 126558684 126558987 -155634677 + AluSq SINE Alu 1 299 -14 1395 164 47 66 chr1 126558987 126559201 -155634463 + AluJo SINE Alu 147 354 0 255 275 150 25 chr1 126559811 126559897 -155633767 + MIR3 SINE MIR 65 165 -43 290 254 369 0 chr1 126559897 126560027 -155633637 - MER5B DNA MER1_type 0 178 1 766 160 42 8 chr1 126560985 126561104 -155632560 + FLAM_C SINE Alu 2 124 -19 21 36 0 0 chr1 126561105 126561133 -155632531 + AT_rich Low_complexity Low_complexity 1 28 0 420 282 53 53 chr1 126561191 126561310 -155632354 - MIR SINE MIR -13 249 128 2220 112 3 16 chr1 126561310 126561624 -155632040 + AluSx SINE Alu 1 310 -2 420 282 53 53 chr1 126561624 126561674 -155631990 - MIR SINE MIR -133 129 80 222 37 0 0 chr1 126562023 126562050 -155631614 + (TG)n Simple_repeat Simple_repeat 2 28 0 2445 73 3 3 chr1 126562060 126562361 -155631303 - AluSq SINE Alu -12 301 1 279 0 0 0 chr1 126562361 126562392 -155631272 + (TG)n Simple_repeat Simple_repeat 2 32 0 1523 159 87 7 chr1 126563563 126563839 -155629825 + AluJo SINE Alu 5 302 -10 1771 146 51 24 chr1 126565662 126565957 -155627707 + AluJo SINE Alu 1 303 -9 2131 127 3 0 chr1 126566001 126566301 -155627363 - AluSx SINE Alu -11 301 1 2079 115 21 0 chr1 126566605 126566891 -155626773 - AluSx SINE Alu -19 293 2 316 283 0 40 chr1 126566935 126567034 -155626630 - MIR SINE MIR -70 192 98 264 253 278 53 chr1 126567078 126567323 -155626341 - L2 LINE L2 0 3313 3014 2381 94 3 0 chr1 126567668 126567975 -155625689 - AluSc SINE Alu -1 308 1 1455 195 143 0 chr1 126568240 126568253 -155625411 - MSTC LTR MaLR -53 375 365 1890 93 24 0 chr1 126568253 126568525 -155625139 + AluSq SINE Alu 35 312 0 1455 195 143 0 chr1 126568525 126568838 -155624826 - MSTC LTR MaLR -63 365 1 1627 159 28 17 chr1 126569298 126569421 -155624243 + AluJb SINE Alu 1 121 -191 248 0 0 30 chr1 126569421 126569454 -155624210 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1627 159 28 17 chr1 126569454 126569619 -155624045 + AluJb SINE Alu 121 292 -20 234 0 0 0 chr1 126569637 126569663 -155624001 + (GA)n Simple_repeat Simple_repeat 2 27 0 257 242 67 40 chr1 126569801 126569950 -155623714 - L1ME LINE L1 -224 5897 5745 207 274 0 0 chr1 126570307 126570358 -155623306 + T-rich Low_complexity Low_complexity 1 51 0 2145 129 0 22 chr1 126570395 126570713 -155622951 + AluSx SINE Alu 2 312 0 2064 123 7 13 chr1 126570717 126571019 -155622645 + AluSx SINE Alu 1 300 -12 490 174 43 0 chr1 126571264 126571356 -155622308 + MER82 DNA MER2_type 1 96 -557 203 415 11 0 chr1 126571438 126571532 -155622132 - MIR SINE MIR -116 146 52 878 244 12 0 chr1 126571544 126571716 -155621948 + MER82 DNA MER2_type 435 608 -45 948 170 18 24 chr1 126572360 126572525 -155621139 + AluJb SINE Alu 2 165 -147 1899 116 31 56 chr1 126572737 126573057 -155620607 - AluSx SINE Alu 0 312 1 1551 161 30 22 chr1 126574242 126574509 -155619155 + AluJb SINE Alu 12 280 -32 2050 118 10 20 chr1 126574528 126574825 -155618839 + AluSx SINE Alu 1 294 -18 288 77 0 0 chr1 126574859 126574898 -155618766 + AluJ/FLAM SINE Alu 25 63 -239 676 170 0 0 chr1 126574898 126574998 -155618666 + AluJb SINE Alu 167 266 -46 216 67 0 0 chr1 126575590 126575620 -155618044 + (TG)n Simple_repeat Simple_repeat 1 30 0 1076 161 33 0 chr1 126576210 126576390 -155617274 + AluJb SINE Alu 120 305 -7 611 89 27 71 chr1 126576759 126576825 -155616839 - L1MD1 LINE L1 0 6242 6181 1814 167 13 10 chr1 126576825 126577136 -155616528 + AluJo SINE Alu 1 312 0 611 89 27 71 chr1 126577136 126577181 -155616483 - L1MD1 LINE L1 -61 6181 6136 2243 97 3 3 chr1 126577222 126577520 -155616144 + AluSq SINE Alu 1 298 -15 219 69 0 0 chr1 126578198 126578227 -155615437 + (CAT)n Simple_repeat Simple_repeat 2 30 0 379 207 60 183 chr1 126578245 126578496 -155615168 - MIR SINE MIR -24 238 19 914 188 0 0 chr1 126578582 126578731 -155614933 + FRAM SINE Alu 1 149 -27 2313 85 0 0 chr1 126578783 126579065 -155614599 + AluSc SINE Alu 10 291 -18 27 73 0 0 chr1 126579094 126579149 -155614515 + AT_rich Low_complexity Low_complexity 1 55 0 2017 130 30 0 chr1 126579251 126579551 -155614113 - AluSp SINE Alu -3 310 2 2572 243 144 35 chr1 126579644 126579968 -155613696 + HAL1 LINE L1 634 921 -1586 1854 171 3 3 chr1 126579968 126580260 -155613404 + AluJo SINE Alu 1 292 -20 2572 243 144 35 chr1 126580260 126581057 -155612607 + HAL1 LINE L1 921 1878 -629 1096 145 0 0 chr1 126581180 126581339 -155612325 - L1PB1 LINE L1 -15 6136 5978 963 156 60 0 chr1 126581730 126581897 -155611767 + MLT1D LTR MaLR 1 177 -328 7577 36 6 1 chr1 126581995 126583381 -155610283 - L1PA5 LINE L1 -7 6147 4747 2465 59 56 0 chr1 126583381 126583702 -155609962 + L1P LINE L1 555 893 -5253 1029 199 182 17 chr1 126583702 126583993 -155609671 + MLT1D LTR MaLR 167 505 0 229 227 133 0 chr1 126584089 126584164 -155609500 - L1ME4a LINE L1 -23 6098 6014 434 216 0 29 chr1 126584409 126584511 -155609153 - MLT1K LTR MaLR -18 570 472 760 159 139 26 chr1 126584520 126584671 -155608993 + AluJo SINE Alu 123 290 -22 27 29 0 0 chr1 126584671 126584705 -155608959 + AT_rich Low_complexity Low_complexity 1 34 0 297 324 43 36 chr1 126584728 126584867 -155608797 - MLT1K LTR MaLR -166 422 283 807 180 0 0 chr1 126585157 126585279 -155608385 + FLAM_C SINE Alu 2 123 -20 858 145 8 15 chr1 126585555 126585710 -155607954 + FLAM_C SINE Alu 2 155 0 1977 148 10 0 chr1 126585722 126586013 -155607651 - AluSx SINE Alu -18 294 1 628 250 68 31 chr1 126586158 126586350 -155607314 + MLT1J LTR MaLR 1 199 -312 1897 166 0 0 chr1 126586388 126586684 -155606980 - AluJb SINE Alu -16 296 1 1066 159 0 0 chr1 126588197 126588354 -155605310 + FRAM SINE Alu 1 156 -20 23 0 0 0 chr1 126588354 126588377 -155605287 + AT_rich Low_complexity Low_complexity 1 23 0 2162 98 7 0 chr1 126588455 126588731 -155604933 + AluSq SINE Alu 4 281 -32 1330 234 79 38 chr1 126589558 126589976 -155603688 - LTR16A LTR ERVL 0 450 16 1137 161 0 0 chr1 126590512 126590674 -155602990 + FRAM SINE Alu 2 163 -3 210 346 161 0 chr1 126590686 126590767 -155602897 + L2 LINE L2 3160 3253 -19 * 310 256 58 0 chr1 126590761 126590847 -155602817 - MIR3 SINE MIR -5 203 113 273 311 141 24 chr1 126590927 126591133 -155602531 + L2 LINE L2 2037 2266 -1048 431 341 79 47 chr1 126591149 126591479 -155602185 + L2 LINE L2 2414 2759 -555 2166 125 3 0 chr1 126591479 126591783 -155601881 - AluSq SINE Alu -8 305 1 431 341 79 47 chr1 126591783 126591833 -155601831 + L2 LINE L2 2759 2806 -508 934 132 0 23 chr1 126591852 126591981 -155601683 + FLAM_C SINE Alu 1 126 -7 754 258 56 5 chr1 126592020 126592218 -155601446 + MIR SINE MIR 34 241 -21 1689 160 14 7 chr1 126592330 126592617 -155601047 + AluJo SINE Alu 18 306 -6 1701 175 55 0 chr1 126592851 126593142 -155600522 + AluJb SINE Alu 1 307 -5 1209 216 102 88 chr1 126593211 126593601 -155600063 + MLT1E LTR MaLR 1 505 -149 2108 104 9 38 chr1 126593601 126594246 -155599418 - AluSx SINE Alu 0 331 4 752 165 0 16 chr1 126593604 126593620 -155600044 - AluJo/FRAM SINE Alu -1 311 296 2397 104 0 0 chr1 126593804 126594113 -155599551 - AluSx SINE Alu -3 309 1 752 165 0 16 chr1 126594246 126594356 -155599308 - AluJo/FRAM SINE Alu -16 296 187 906 163 31 6 chr1 126594357 126594517 -155599147 + MLT1F LTR MaLR 377 540 -2 1354 154 22 22 chr1 126594680 126594947 -155598717 + L1MB3 LINE L1 5915 6181 -2 21 71 0 0 chr1 126594983 126595025 -155598639 + AT_rich Low_complexity Low_complexity 1 42 0 1886 141 10 7 chr1 126595516 126595815 -155597849 - AluJb SINE Alu -12 300 1 1152 111 0 78 chr1 126596211 126596391 -155597273 + AluSg/x SINE Alu 133 298 -14 234 276 9 69 chr1 126596755 126596871 -155596793 + L1MC4 LINE L1 7802 7910 -132 399 249 18 3 chr1 126596912 126597040 -155596624 + L1MC4 LINE L1 7908 7994 -1 225 0 0 0 chr1 126597181 126597206 -155596458 + (TA)n Simple_repeat Simple_repeat 1 25 0 1753 149 0 0 chr1 126597211 126597460 -155596204 + AluSx SINE Alu 1 249 -63 446 117 130 0 chr1 126597497 126597574 -155596090 + AluSg/x SINE Alu 215 301 -9 1011 261 20 74 chr1 126597583 126597935 -155595729 + HAL1 LINE L1 2 334 -2173 1723 116 45 75 chr1 126597944 126598283 -155595381 + AluSx SINE Alu 1 330 0 21 0 0 0 chr1 126598293 126598314 -155595350 + AT_rich Low_complexity Low_complexity 1 21 0 1068 272 111 17 chr1 126598455 126598815 -155594849 + HAL1 LINE L1 435 828 -1679 690 151 92 0 chr1 126598841 126598960 -155594704 + FLAM_C SINE Alu 1 130 -3 813 233 27 19 chr1 126599088 126599309 -155594355 - MER77 LTR ERV1 -6 599 380 192 40 0 0 chr1 126599415 126599440 -155594224 + (TA)n Simple_repeat Simple_repeat 2 26 0 517 254 130 40 chr1 126599511 126599688 -155593976 - MER77 LTR ERV1 -221 384 192 388 264 79 14 chr1 126599800 126599940 -155593724 - MER77 LTR ERV1 -396 209 61 525 254 36 75 chr1 126599973 126600225 -155593439 + L1MC4 LINE L1 7794 8035 -7 4711 158 18 11 chr1 126600552 126601379 -155592285 + L1MC1 LINE L1 5493 6325 -8 823 181 0 0 chr1 126601393 126601526 -155592138 + FLAM_C SINE Alu 1 133 0 306 106 0 0 chr1 126601526 126601573 -155592091 + (GA)n Simple_repeat Simple_repeat 2 48 0 2394 106 0 6 chr1 126601598 126601909 -155591755 + AluSx SINE Alu 1 309 -3 1312 157 23 96 chr1 126602092 126602341 -155591323 + MER33 DNA MER1_type 6 225 -2360 2152 118 3 7 chr1 126602341 126602638 -155591026 - AluSx SINE Alu -15 297 2 1312 157 23 96 chr1 126602638 126602732 -155590932 + MER33 DNA MER1_type 225 324 0 537 132 0 0 chr1 126603282 126603358 -155590306 + AluSg/x SINE Alu 216 291 -19 318 26 0 0 chr1 126603360 126603399 -155590265 + (TA)n Simple_repeat Simple_repeat 1 39 0 30 0 0 0 chr1 126603496 126603526 -155590138 + AT_rich Low_complexity Low_complexity 1 30 0 2012 145 7 0 chr1 126603651 126603947 -155589717 - AluSx SINE Alu -14 298 1 1339 99 0 108 chr1 126604038 126604261 -155589403 - AluSx SINE Alu -113 199 1 428 290 68 74 chr1 126604262 126604439 -155589225 + HAL1b LINE L1 376 553 -795 2073 103 3 14 chr1 126604439 126604762 -155588902 - AluSg SINE Alu 0 310 1 428 290 68 74 chr1 126604762 126605056 -155588608 + HAL1b LINE L1 553 844 -504 565 260 58 87 chr1 126605386 126605798 -155587866 - L1ME3A LINE L1 0 6170 5771 247 0 0 0 chr1 126605798 126605825 -155587839 + U3 snRNA snRNA 1 27 -190 2005 134 0 0 chr1 126605825 126606146 -155587518 - AluSx SINE Alu 0 326 6 322 75 0 0 chr1 126606146 126606186 -155587478 - Alu SINE Alu -262 40 1 422 293 38 9 chr1 126606189 126606401 -155587263 - L1ME3A LINE L1 -951 5195 4978 518 311 181 34 chr1 126606403 126606818 -155586846 + HAL1 LINE L1 288 763 -1744 1299 246 119 24 chr1 126606819 126607256 -155586408 - MLT1F LTR MaLR -19 523 57 305 229 22 9 chr1 126607292 126607381 -155586283 - MER68 LTR ERV1 -7 555 498 2533 68 0 3 chr1 126608122 126608432 -155585232 - AluY SINE Alu -2 309 1 1479 205 138 27 chr1 126609983 126610353 -155583311 - MER77 LTR ERV1 -154 451 41 308 219 31 0 chr1 126610364 126610428 -155583236 - MLT1F LTR MaLR -476 66 1 1029 165 37 0 chr1 126610501 126610665 -155582999 - FRAM SINE Alu -7 169 1 330 238 97 101 chr1 126610665 126610963 -155582701 + HAL1 LINE L1 810 1106 -1401 2261 109 0 0 chr1 126611140 126611434 -155582230 - AluY SINE Alu -17 294 1 384 135 0 0 chr1 126611450 126611502 -155582162 - AluJo SINE Alu -11 289 238 1137 142 15 46 chr1 126611505 126611702 -155581962 - AluJo SINE Alu -116 196 6 562 223 0 9 chr1 126611717 126611829 -155581835 - MER69A DNA AcHobo -65 112 2 457 271 18 68 chr1 126611831 126611994 -155581670 + HAL1 LINE L1 2274 2425 -82 2537 83 0 10 chr1 126611994 126612308 -155581356 - AluY SINE Alu 0 311 1 457 271 18 68 chr1 126612308 126612365 -155581299 + HAL1 LINE L1 2425 2483 -24 720 181 0 36 chr1 126612469 126612607 -155581057 - AluJo SINE Alu -177 135 3 1598 122 0 4 chr1 126612906 126613135 -155580529 - AluSg/x SINE Alu -12 298 71 2132 99 0 7 chr1 126613567 126613851 -155579813 + AluSx SINE Alu 1 282 -30 3354 167 13 33 chr1 126614003 126614601 -155579063 + L1M2a LINE L1 1 586 -6582 842 257 47 8 chr1 126614600 126614857 -155578807 - L1MC4 LINE L1 -683 7359 7093 * 470 285 39 48 chr1 126614879 126615086 -155578578 - LTR16C LTR ERVL -2 489 285 836 204 102 33 chr1 126615346 126615591 -155578073 - L1MC4 LINE L1 -970 7072 6811 2087 139 0 0 chr1 126615845 126616139 -155577525 - AluSx SINE Alu -18 294 1 2060 111 0 28 chr1 126616274 126616595 -155577069 - AluSg SINE Alu 0 313 1 812 266 135 36 chr1 126616792 126617267 -155576397 - L1MC4a LINE L1 -1061 6747 6218 2217 115 3 0 chr1 126617267 126617563 -155576101 - AluSx SINE Alu -15 297 1 812 266 135 36 chr1 126617563 126617590 -155576074 - L1MC4a LINE L1 -1590 6218 6195 763 238 176 37 chr1 126617605 126617929 -155575735 + L1MC4a LINE L1 5783 6151 -1657 2315 94 3 22 chr1 126617929 126618247 -155575417 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 126618254 126618278 -155575386 + AT_rich Low_complexity Low_complexity 1 24 0 1859 183 0 0 chr1 126618282 126618577 -155575087 + AluJo SINE Alu 1 295 -17 263 216 225 24 chr1 126618587 126618800 -155574864 + L1ME4a LINE L1 5814 6069 -52 1849 146 0 36 chr1 126618868 126619041 -155574623 - AluSx SINE Alu -14 298 139 2329 109 0 0 chr1 126619041 126619344 -155574320 - AluSx SINE Alu -9 303 1 1849 146 0 36 chr1 126619344 126619479 -155574185 - AluSx SINE Alu -173 139 1 2083 174 72 52 chr1 126619525 126620009 -155573655 + MLT1D LTR MaLR 10 503 -2 2053 153 3 0 chr1 126620099 126620406 -155573258 + AluJb SINE Alu 1 308 -4 528 233 25 0 chr1 126620657 126620777 -155572887 + MLT1J2 LTR MaLR 21 143 -307 330 244 0 33 chr1 126620901 126620991 -155572673 + MLT1J2 LTR MaLR 345 431 -19 21 36 0 0 chr1 126621029 126621057 -155572607 + AT_rich Low_complexity Low_complexity 1 28 0 306 282 73 40 chr1 126621134 126621258 -155572406 - MLT1J LTR MaLR -58 453 326 348 229 2 25 chr1 126621314 126621405 -155572259 - MLT1J LTR MaLR -292 180 73 320 260 26 0 chr1 126621834 126621911 -155571753 - MER94 DNA DNA -54 80 2 840 132 8 8 chr1 126621972 126622101 -155571563 + FLAM_C SINE Alu 1 129 -4 2352 107 0 0 chr1 126622371 126622670 -155570994 + AluSx SINE Alu 1 299 -13 1018 111 0 7 chr1 126622891 126623026 -155570638 - AluSq/x SINE Alu -179 134 1 246 337 64 21 chr1 126623076 126623358 -155570306 - L1MC/D LINE L1 -2252 5556 5263 1604 161 0 71 chr1 126623799 126624121 -155569543 + AluJo SINE Alu 1 299 -13 560 248 56 60 chr1 126624156 126624422 -155569242 - MER39 LTR ERV1 -173 534 68 2445 210 42 27 chr1 126624473 126624982 -155568682 - L1MC4 LINE L1 -947 7048 6548 2368 99 0 0 chr1 126624982 126625284 -155568380 - AluSx SINE Alu -10 302 1 2445 210 42 27 chr1 126625284 126625332 -155568332 - L1MC4 LINE L1 -1447 6548 6502 2364 102 0 3 chr1 126625332 126625645 -155568019 - AluSq SINE Alu -1 312 1 2445 210 42 27 chr1 126625645 126625694 -155567970 - L1MC4 LINE L1 -1493 6502 6444 1925 159 0 7 chr1 126626184 126626479 -155567185 + AluJo SINE Alu 1 293 -19 21 36 0 0 chr1 126626481 126626509 -155567155 + AT_rich Low_complexity Low_complexity 1 28 0 786 221 62 42 chr1 126626655 126626895 -155566769 - MIR SINE MIR -16 246 2 270 303 50 77 chr1 126626964 126627284 -155566380 - L2 LINE L2 -217 3055 2743 255 323 16 16 chr1 126627368 126627495 -155566169 - L2 LINE L2 -733 2581 2455 2067 106 53 0 chr1 126627539 126627821 -155565843 - AluSx SINE Alu -15 297 1 797 260 43 25 chr1 126627861 126628138 -155565526 - L2 LINE L2 -881 2433 2152 1976 203 160 55 chr1 126628178 126628498 -155565166 + MER77 LTR ERV1 5 290 -315 2339 80 3 17 chr1 126628498 126628800 -155564864 - AluY SINE Alu -13 298 1 1976 203 160 55 chr1 126628800 126629010 -155564654 + MER77 LTR ERV1 290 591 -14 641 277 25 54 chr1 126629031 126629179 -155564485 - L2 LINE L2 -1240 2074 1936 2074 120 0 3 chr1 126629179 126629471 -155564193 + AluSx SINE Alu 1 291 -21 641 277 25 54 chr1 126629471 126629600 -155564064 - L2 LINE L2 -1378 1936 1805 1696 185 7 16 chr1 126629600 126629908 -155563756 - AluJo SINE Alu -7 305 1 183 80 0 0 chr1 126629929 126629954 -155563710 + (A)n Simple_repeat Simple_repeat 1 25 0 514 255 102 0 chr1 126630036 126630232 -155563432 + L1ME LINE L1 5584 5799 -322 684 163 24 8 chr1 126630548 126630671 -155562993 - FLAM_C SINE Alu -6 127 3 432 273 125 23 chr1 126631318 126631534 -155562130 - MIR SINE MIR -24 238 1 352 266 120 10 chr1 126631921 126632113 -155561551 + L2 LINE L2 2552 2764 -550 327 186 10 118 chr1 126632113 126632215 -155561449 + Charlie2 DNA MER1_type 1 91 -2771 426 195 134 37 chr1 126632289 126632453 -155561211 + Charlie2 DNA MER1_type 2133 2312 -550 472 208 63 25 chr1 126632511 126632670 -155560994 + Charlie2 DNA MER1_type 2697 2861 -1 647 231 286 18 chr1 126632674 126633072 -155560592 + L2 LINE L2 2805 3309 -4 1200 192 59 31 chr1 126633090 126633377 -155560287 + AluJb SINE Alu 1 295 -7 2346 72 0 26 chr1 126633536 126633841 -155559823 - AluSx SINE Alu -15 297 1 255 310 53 3 chr1 126633941 126634105 -155559559 - MER5B DNA MER1_type -2 187 3 235 64 21 21 chr1 126634184 126634231 -155559433 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 187 125 0 36 chr1 126634724 126634780 -155558884 + (CGG)n Simple_repeat Simple_repeat 3 56 0 25 0 0 0 chr1 126634881 126634906 -155558758 + GC_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr1 126634979 126635022 -155558642 + GC_rich Low_complexity Low_complexity 1 43 0 618 226 199 35 chr1 126636348 126636635 -155557029 - MER46C DNA MER2_type -4 334 1 326 314 52 20 chr1 126636691 126636844 -155556820 - L2 LINE L2 -559 2755 2598 469 259 70 6 chr1 126636921 126637079 -155556585 + MIR SINE MIR 50 217 -45 2037 142 7 0 chr1 126637765 126638054 -155555610 - AluSx SINE Alu -21 291 1 879 165 152 0 chr1 126638523 126638687 -155554977 + MER5A DNA MER1_type 1 189 0 394 291 67 6 chr1 126638876 126639041 -155554623 - MER5A DNA MER1_type -12 177 3 637 132 0 0 chr1 126639254 126639345 -155554319 + FLAM_A SINE Alu 33 123 -19 2169 116 7 3 chr1 126639486 126639787 -155553877 - AluSq SINE Alu -11 302 1 2179 106 0 0 chr1 126640021 126640328 -155553336 + AluSx SINE Alu 1 307 0 516 255 142 39 chr1 126640706 126640910 -155552754 + MIR SINE MIR 38 262 0 3998 203 61 76 chr1 126641232 126641458 -155552206 + Charlie1a DNA MER1_type 1 229 -2532 1535 187 0 11 chr1 126641458 126641736 -155551928 + AluJb SINE Alu 38 312 0 3998 203 61 76 chr1 126641736 126642386 -155551278 + Charlie1a DNA MER1_type 229 887 -1874 2182 128 10 0 chr1 126642386 126642690 -155550974 - AluSx SINE Alu -5 307 1 3998 203 61 76 chr1 126642690 126643083 -155550581 + Charlie1a DNA MER1_type 887 1248 -1513 1830 168 14 0 chr1 126643083 126643375 -155550289 + AluJb SINE Alu 2 297 -15 3998 203 61 76 chr1 126643375 126643579 -155550085 + Charlie1a DNA MER1_type 1248 1454 -1 408 274 96 24 chr1 126644046 126644232 -155549432 - L1M4 LINE L1 -749 5397 5193 2113 223 33 33 chr1 126644232 126644673 -155548991 + MLT1F LTR MaLR 1 444 -98 2803 10 0 0 chr1 126644673 126644980 -155548684 - AluYa5 SINE Alu -4 307 1 2113 223 33 33 chr1 126644980 126645080 -155548584 + MLT1F LTR MaLR 443 542 0 408 274 96 24 chr1 126645080 126645101 -155548563 - L1M4 LINE L1 -953 5193 5175 26 0 0 0 chr1 126645267 126645293 -155548371 + AT_rich Low_complexity Low_complexity 1 26 0 1023 180 0 17 chr1 126645386 126645564 -155548100 + FAM SINE Alu 1 175 0 291 264 64 16 chr1 126645571 126645696 -155547968 - L1M4 LINE L1 -1524 4622 4492 2119 103 3 20 chr1 126645718 126646010 -155547654 - AluSq SINE Alu -26 287 1 565 249 81 9 chr1 126646031 126646252 -155547412 - L1MEd LINE L1 -5291 828 592 306 206 98 10 chr1 126646399 126646501 -155547163 - L1MEd LINE L1 -5648 471 361 548 248 127 74 chr1 126646598 126647243 -155546421 - HAL1 LINE L1 -750 1757 1065 1992 104 64 7 chr1 126647243 126647523 -155546141 - AluSx SINE Alu -16 296 1 548 248 127 74 chr1 126647523 126647634 -155546030 - HAL1 LINE L1 -1442 1065 961 1204 132 6 0 chr1 126647742 126647909 -155545755 - AluSg/x SINE Alu -10 302 135 301 292 56 26 chr1 126647955 126648150 -155545514 - HAL1 LINE L1 -1558 949 749 2636 196 110 29 chr1 126648152 126648288 -155545376 + Cheshire DNA MER1_type 1 125 -2295 2143 120 0 17 chr1 126648288 126648589 -155545075 + AluSq SINE Alu 1 296 -17 2636 196 110 29 chr1 126648589 126649181 -155544483 + Cheshire DNA MER1_type 125 788 -1632 581 158 127 0 chr1 126649198 126649363 -155544301 + Cheshire DNA MER1_type 2201 2386 -34 21 57 0 0 chr1 126649972 126650007 -155543657 + AT_rich Low_complexity Low_complexity 1 35 0 251 143 0 0 chr1 126650412 126650454 -155543210 + LTR54 LTR ERV1 402 443 -67 2002 117 0 4 chr1 126650677 126650950 -155542714 + AluSx SINE Alu 4 275 -37 195 42 0 0 chr1 126650954 126650978 -155542686 + (CAA)n Simple_repeat Simple_repeat 2 25 0 231 276 23 0 chr1 126651140 126651227 -155542437 - L1M1 LINE L1 -866 5439 5351 314 252 39 63 chr1 126651382 126651509 -155542155 - L1MC4a LINE L1 -1629 6179 6056 567 197 0 66 chr1 126651568 126651628 -155542036 + L1MB4 LINE L1 4861 4923 -1223 1447 173 30 34 chr1 126651628 126651766 -155541898 + AluJb SINE Alu 1 138 -174 2206 97 7 0 chr1 126651766 126652054 -155541610 + AluSc SINE Alu 1 290 -19 1447 173 30 34 chr1 126652054 126652210 -155541454 + AluJb SINE Alu 138 294 -18 567 197 0 66 chr1 126652210 126652301 -155541363 + L1MB4 LINE L1 4923 5002 -1144 812 181 0 0 chr1 126652304 126652437 -155541227 + FLAM_C SINE Alu 1 133 -10 3612 153 50 76 chr1 126652456 126653556 -155540108 + L1MB4 LINE L1 5107 6179 -1 2536 206 57 29 chr1 126653642 126654064 -155539600 - MER82 DNA MER2_type -6 647 200 1845 174 3 10 chr1 126654064 126654369 -155539295 - AluJb SINE Alu -9 303 1 2536 206 57 29 chr1 126654369 126654573 -155539091 - MER82 DNA MER2_type -453 200 3 229 178 0 0 chr1 126654660 126654705 -155538959 - L1MDa LINE L1 -3775 2765 2721 3762 166 45 52 chr1 126654705 126655057 -155538607 - L1MB8 LINE L1 -15 6163 5810 633 139 37 0 chr1 126655057 126655165 -155538499 - HY1 scRNA scRNA 0 112 1 3762 166 45 52 chr1 126655165 126655723 -155537941 - L1MB8 LINE L1 -368 5810 5259 918 128 0 0 chr1 126655733 126655920 -155537744 - FLAM_C SINE Alu 0 187 1 1463 191 37 57 chr1 126655956 126656013 -155537651 - L1MB8 LINE L1 -925 5221 5164 325 172 50 20 chr1 126656013 126656112 -155537552 - L1MB4 LINE L1 0 6180 6079 1907 164 7 10 chr1 126656117 126656427 -155537237 - AluJo SINE Alu -3 309 1 1463 191 37 57 chr1 126656427 126656823 -155536841 - L1MB8 LINE L1 -986 5160 4771 917 148 19 124 chr1 126656840 126657050 -155536614 - AluJo SINE Alu -31 281 94 1907 151 7 7 chr1 126657103 126657407 -155536257 - AluJo SINE Alu -8 304 1 1941 214 108 76 chr1 126657445 126657958 -155535706 - L1MDa LINE L1 -3903 2637 2142 2917 6 0 0 chr1 126657958 126658273 -155535391 - AluYb8 SINE Alu -3 315 1 1941 214 108 76 chr1 126658273 126658786 -155534878 - L1MDa LINE L1 -4398 2142 1561 2179 131 3 0 chr1 126658786 126659083 -155534581 - AluSx SINE Alu -14 298 1 1941 214 108 76 chr1 126659083 126659304 -155534360 - L1MDa LINE L1 -4979 1561 1349 421 83 0 60 chr1 126659307 126659391 -155534273 - AluSp SINE Alu 0 312 234 664 150 17 25 chr1 126659394 126659514 -155534150 - AluSp SINE Alu -160 153 35 735 234 69 63 chr1 126659514 126659609 -155534055 - L1MDa LINE L1 -5209 1334 1241 2065 132 0 3 chr1 126659609 126659896 -155533768 - AluSx SINE Alu -26 286 1 735 234 69 63 chr1 126659896 126660150 -155533514 - L1MDa LINE L1 -5302 1241 983 373 314 82 99 chr1 126660151 126660454 -155533210 - L1MDa LINE L1 -5547 993 499 260 209 20 0 chr1 126660503 126660573 -155533091 - L1MDa LINE L1 -5592 948 569 2234 87 0 55 chr1 126660822 126660997 -155532667 - AluSx SINE Alu -17 295 143 1969 158 0 6 chr1 126660997 126661308 -155532356 - AluSx SINE Alu -3 309 1 2234 87 0 55 chr1 126661308 126661444 -155532220 - AluSx SINE Alu -169 143 1 301 356 138 0 chr1 126661816 126662004 -155531660 + L2 LINE L2 2288 2501 -813 264 236 115 113 chr1 126662007 126662177 -155531487 - L1MEc LINE L1 -2443 4201 4033 2144 98 20 3 chr1 126662177 126662472 -155531192 + AluSx SINE Alu 1 300 -12 264 236 115 113 chr1 126662472 126662571 -155531093 - L1MEc LINE L1 -2611 4033 3936 1684 170 0 7 chr1 126662571 126662842 -155530822 - AluJo SINE Alu -19 293 25 264 236 115 113 chr1 126662842 126662922 -155530742 - L1MEc LINE L1 -2708 3936 3858 1962 134 150 11 chr1 126662922 126663296 -155530368 - MSTA LTR MaLR -2 426 1 264 236 115 113 chr1 126663296 126663655 -155530009 - L1MEc LINE L1 -2786 3858 3489 673 249 83 0 chr1 126663661 126663842 -155529822 - MER3 DNA MER1_type -6 203 8 1990 108 4 7 chr1 126663847 126664125 -155529539 + AluSx SINE Alu 21 297 -15 336 221 0 0 chr1 126664181 126664258 -155529406 + (TA)n Simple_repeat Simple_repeat 2 78 0 2069 129 3 0 chr1 126664389 126664676 -155528988 - AluSg SINE Alu -22 288 1 420 201 91 127 chr1 126664697 126664793 -155528871 - L1MEc LINE L1 -3687 2957 2859 1802 112 0 4 chr1 126664793 126665035 -155528629 - AluSx SINE Alu -8 304 64 420 201 91 127 chr1 126665035 126665355 -155528309 - L1MEc LINE L1 -3785 2859 2600 5579 54 17 10 chr1 126665492 126666195 -155527469 - SVA Other Other -1 1385 678 572 262 96 33 chr1 126666335 126666924 -155526740 - L1MEc LINE L1 -4646 2179 1349 2170 111 3 7 chr1 126666924 126667222 -155526442 - AluSq SINE Alu -16 297 1 572 262 96 33 chr1 126667222 126667420 -155526244 - L1MEc LINE L1 -5476 1349 1165 681 261 30 0 chr1 126668119 126668322 -155525342 - MER3 DNA MER1_type 0 209 1 539 250 186 0 chr1 126668354 126668574 -155525090 - MIR SINE MIR 0 262 2 493 279 74 13 chr1 126668741 126669039 -155524625 - L1MEc LINE L1 -2207 4437 4122 1077 191 15 0 chr1 126669984 126670183 -155523481 - AluJo SINE Alu -26 286 85 343 270 60 33 chr1 126670261 126670292 -155523372 - L1M4 LINE L1 -4831 1711 1682 2190 95 3 7 chr1 126670292 126670588 -155523076 - AluY SINE Alu -16 295 1 343 270 60 33 chr1 126670588 126670840 -155522824 - L1M4 LINE L1 -4860 1682 1475 676 226 38 94 chr1 126670891 126671081 -155522583 - L1MEc LINE L1 -3633 3011 2812 2196 102 0 30 chr1 126671081 126671386 -155522278 - AluSp SINE Alu -17 296 1 1805 153 10 36 chr1 126671386 126671694 -155521970 - AluJo SINE Alu -7 305 6 676 226 38 94 chr1 126671694 126671787 -155521877 - L1MEc LINE L1 -3831 2813 2716 1566 172 35 8 chr1 126671787 126672048 -155521616 + AluJo SINE Alu 1 268 -44 676 226 38 94 chr1 126672048 126672235 -155521429 - L1MEc LINE L1 -3928 2716 2608 247 193 88 0 chr1 126672254 126672311 -155521353 + LTR10A LTR ERV1 1 62 -547 1803 108 53 90 chr1 126672384 126672714 -155520950 + LTR10A LTR ERV1 185 501 -108 2072 88 0 4 chr1 126672714 126672976 -155520688 - AluY SINE Alu -13 298 38 1803 108 53 90 chr1 126672976 126673023 -155520641 + LTR10A LTR ERV1 501 548 -61 292 241 100 28 chr1 126673057 126673200 -155520464 - L1M2 LINE L1 -4436 1947 1394 1624 167 61 0 chr1 126673244 126673537 -155520127 - AluJb SINE Alu -1 311 1 568 209 76 23 chr1 126673926 126674098 -155519566 - MER46C DNA MER2_type -114 224 44 227 234 0 26 chr1 126674326 126674403 -155519261 + T-rich Low_complexity Low_complexity 2 76 0 2058 119 20 14 chr1 126674526 126674821 -155518843 - AluSc SINE Alu -12 297 1 3185 148 27 51 chr1 126674821 126674889 -155518775 - Tigger1 DNA MER2_type -1765 653 585 1813 177 7 0 chr1 126674889 126675189 -155518475 + AluJb SINE Alu 1 302 -10 3185 148 27 51 chr1 126675189 126675323 -155518341 - Tigger1 DNA MER2_type -1833 585 449 249 33 0 0 chr1 126675323 126675353 -155518311 + (TTG)n Simple_repeat Simple_repeat 1 30 0 3185 148 27 51 chr1 126675353 126675818 -155517846 - Tigger1 DNA MER2_type -1969 449 1 204 97 0 0 chr1 126677410 126677441 -155516223 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 298 213 32 64 chr1 126678315 126678409 -155515255 - MER112 DNA MER1_type -164 96 6 770 289 18 9 chr1 126678863 126679081 -155514583 + MIR SINE MIR 1 220 -42 723 97 0 35 chr1 126679091 126679205 -155514459 + AluSp SINE Alu 1 110 -203 722 224 17 34 chr1 126679211 126679636 -155514028 - MER77 LTR ERV1 -100 505 1 2275 78 7 10 chr1 126679922 126680228 -155513436 - AluSg SINE Alu -5 305 1 33 0 0 0 chr1 126680317 126680350 -155513314 + AT_rich Low_complexity Low_complexity 1 33 0 717 130 65 0 chr1 126680350 126680458 -155513206 - FLAM_C SINE Alu -14 119 5 228 370 92 0 chr1 126680501 126680620 -155513044 + MER91C DNA MER1_type 1 130 -10 1675 201 72 35 chr1 126680881 126681368 -155512296 - MLT1D LTR MaLR 0 505 1 2109 133 0 0 chr1 126681919 126682220 -155511444 + AluJb SINE Alu 1 301 -11 739 234 80 25 chr1 126683734 126683973 -155509691 - MIR SINE MIR -3 259 8 766 216 106 26 chr1 126684418 126684645 -155509019 - MER21B LTR ERV1 -11 852 608 378 73 82 0 chr1 126684661 126684771 -155508893 + (TA)n Simple_repeat Simple_repeat 2 120 0 895 191 0 0 chr1 126684771 126684923 -155508741 - FRAM SINE Alu -14 152 1 535 178 7 104 chr1 126684937 126685072 -155508592 - MER21B LTR ERV1 -271 592 471 1311 162 40 2 chr1 126685079 126685361 -155508303 - LTR54 LTR ERV1 -13 497 238 234 0 0 0 chr1 126685388 126685414 -155508250 + (A)n Simple_repeat Simple_repeat 1 26 0 552 178 123 7 chr1 126685427 126685573 -155508091 - LTR54 LTR ERV1 -276 234 72 501 98 0 24 chr1 126686125 126686207 -155507457 - LTR54 LTR ERV1 -429 81 2 831 251 142 34 chr1 126686232 126686499 -155507165 - AluJo SINE Alu -5 297 2 1730 251 46 18 chr1 126686505 126686960 -155506704 - MER21B LTR ERV1 -395 468 1 1493 167 71 166 chr1 126687206 126688019 -155505645 - LTR8A LTR ERV1 0 691 1 1475 247 38 57 chr1 126688160 126688690 -155504974 - MER21-int LTR ERV1 -1729 2462 1943 331 320 32 57 chr1 126689259 126689628 -155504036 - HERVL LTR ERVL -2968 2686 2327 598 280 34 11 chr1 126689714 126689889 -155503775 - MER21-int LTR ERV1 -2319 1872 1694 4302 234 25 56 chr1 126690113 126691297 -155502367 - MER21-int LTR ERV1 -2335 4423 3286 1507 188 52 7 chr1 126691297 126691584 -155502080 - AluJo SINE Alu -12 300 1 4302 234 25 56 chr1 126691584 126691772 -155501892 - MER21-int LTR ERV1 -3472 3286 3094 2233 219 32 33 chr1 126691878 126692449 -155501215 - MER77 LTR ERV1 -4 601 54 2158 123 7 0 chr1 126692608 126692901 -155500763 - AluSx SINE Alu -12 300 6 1604 172 13 43 chr1 126693072 126693374 -155500290 - AluJo SINE Alu -19 293 1 2169 73 44 0 chr1 126693523 126693796 -155499868 - AluSc SINE Alu -24 285 1 25 31 0 0 chr1 126694112 126694144 -155499520 + AT_rich Low_complexity Low_complexity 1 32 0 352 231 77 10 chr1 126694199 126694303 -155499361 + MIR SINE MIR 152 262 0 25 51 0 0 chr1 126694331 126694370 -155499294 + AT_rich Low_complexity Low_complexity 1 39 0 237 265 133 0 chr1 126694496 126694579 -155499085 + HAL1 LINE L1 47 140 -2367 21 0 0 0 chr1 126694595 126694616 -155499048 + AT_rich Low_complexity Low_complexity 1 21 0 414 306 62 6 chr1 126694779 126694939 -155498725 + HAL1 LINE L1 451 619 -1888 294 256 190 19 chr1 126695018 126695287 -155498377 + HAL1 LINE L1 1182 1496 -1011 997 120 0 0 chr1 126695295 126695428 -155498236 + AluSx SINE Alu 1 133 -179 1034 161 0 6 chr1 126695476 126695662 -155498002 + AluSx SINE Alu 120 304 0 1124 112 0 12 chr1 126695716 126695877 -155497787 - AluSp SINE Alu -18 295 137 622 257 35 6 chr1 126695881 126696052 -155497612 + HAL1 LINE L1 1579 1754 -753 6677 271 140 25 chr1 126696414 126699010 -155494654 + L2 LINE L2 16 2909 -405 1247 148 79 10 chr1 126699012 126699215 -155494449 - AluJb SINE Alu -95 217 1 430 260 59 20 chr1 126699219 126699473 -155494191 - L1MEc LINE L1 -4100 2296 2033 1449 284 101 36 chr1 126699491 126699832 -155493832 - L1MEc LINE L1 -4401 1995 1678 2093 120 10 3 chr1 126699832 126700132 -155493532 + AluSx SINE Alu 1 302 -10 1449 284 101 36 chr1 126700132 126700447 -155493217 - L1MEc LINE L1 -4718 1678 1385 1774 159 3 23 chr1 126700447 126700748 -155492916 + AluJb SINE Alu 1 295 -17 1449 284 101 36 chr1 126700748 126701351 -155492313 - L1MEc LINE L1 -5011 1385 653 226 286 25 17 chr1 126701960 126702079 -155491585 - L1MEc LINE L1 -6241 155 36 879 138 8 0 chr1 126702105 126702235 -155491429 - FLAM_C SINE Alu -1 132 2 727 113 0 106 chr1 126702455 126702565 -155491099 + FLAM_C SINE Alu 5 125 -177 333 0 0 0 chr1 126702565 126702602 -155491062 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 2127 120 0 7 chr1 126702602 126702886 -155490778 - AluSg SINE Alu -28 282 1 727 113 0 106 chr1 126702886 126702915 -155490749 + FLAM_C SINE Alu 123 130 -172 200 167 48 0 chr1 126702916 126702958 -155490706 + GA-rich Low_complexity Low_complexity 3 46 0 200 352 44 33 chr1 126703024 126703115 -155490549 + MER5B DNA MER1_type 7 98 -80 2411 93 7 0 chr1 126703270 126703580 -155490084 - AluSx SINE Alu 0 312 1 282 383 55 8 chr1 126703812 126703940 -155489724 - L2 LINE L2 -2 3270 3137 277 359 10 0 chr1 126704540 126704643 -155489021 + L2 LINE L2 3175 3278 -35 1265 204 49 18 chr1 126704677 126704962 -155488702 - AluJo SINE Alu -18 294 1 279 269 70 48 chr1 126705144 126705330 -155488334 - L1MEd LINE L1 -4975 1144 955 359 379 58 41 chr1 126705527 126705820 -155487844 - L1MEd LINE L1 -5361 758 461 525 265 105 45 chr1 126705987 126706440 -155487224 - L1ME1 LINE L1 -88 6358 1242 2433 82 10 0 chr1 126706491 126706796 -155486868 - AluSg SINE Alu -2 308 1 304 206 29 15 chr1 126706796 126706854 -155486810 + L1MEc LINE L1 1084 1145 -5251 278 320 127 13 chr1 126707189 126707339 -155486325 - MIR SINE MIR -17 245 79 327 280 0 20 chr1 126707346 126707446 -155486218 + MIR SINE MIR 140 237 -25 432 142 28 94 chr1 126707932 126708038 -155485626 - FLAM_A SINE Alu -43 99 1 22 56 0 0 chr1 126708115 126708151 -155485513 + AT_rich Low_complexity Low_complexity 1 36 0 2152 119 0 0 chr1 126708353 126708646 -155485018 + AluSc SINE Alu 3 295 -14 2287 101 3 0 chr1 126709224 126709521 -155484143 + AluSx SINE Alu 2 299 -13 2204 115 0 3 chr1 126709563 126709867 -155483797 - AluSc SINE Alu -6 303 1 234 47 31 172 chr1 126709940 126709959 -155483705 + L1MB4 LINE L1 6123 6143 -37 1432 212 14 20 chr1 126709959 126710251 -155483413 + AluJo SINE Alu 1 290 -22 234 47 31 172 chr1 126710251 126710295 -155483369 + L1MB4 LINE L1 6143 6177 -3 231 308 154 35 chr1 126710528 126710671 -155482993 + L2 LINE L2 679 838 -2476 219 393 87 14 chr1 126710738 126711013 -155482651 + L2 LINE L2 2592 2886 -428 750 161 32 8 chr1 126711682 126711806 -155481858 + FLAM_C SINE Alu 1 127 -16 221 287 191 9 chr1 126712723 126712838 -155480826 + MIR SINE MIR 124 259 -3 180 0 0 0 chr1 126713146 126713166 -155480498 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 2454 62 0 0 chr1 126713191 126713483 -155480181 - AluY SINE Alu -19 292 1 1049 224 54 59 chr1 126713835 126714224 -155479440 - Tigger8 DNA MER2_type -86 580 194 1778 167 13 0 chr1 126715448 126715754 -155477910 + AluJb SINE Alu 3 312 0 2371 73 0 17 chr1 126716497 126716797 -155476867 + AluSg SINE Alu 1 295 -15 615 153 20 0 chr1 126717027 126717125 -155476539 + AluSg/x SINE Alu 195 294 -18 328 233 165 0 chr1 126718263 126718280 -155475384 - L1MA10 LINE L1 0 6334 6318 674 175 315 0 chr1 126718280 126718480 -155475184 - L1ME2 LINE L1 -9 6155 5893 321 351 44 39 chr1 126719251 126719456 -155474208 + L3 LINE CR1 1271 1476 -101 31 76 0 0 chr1 126719456 126719522 -155474142 + AT_rich Low_complexity Low_complexity 1 66 0 581 252 63 0 chr1 126719551 126719710 -155473954 + MER58C DNA MER1_type 47 215 0 201 244 0 0 chr1 126720996 126721037 -155472627 + GA-rich Low_complexity Low_complexity 2 42 0 28 79 0 0 chr1 126721149 126721212 -155472452 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr1 126721817 126721841 -155471823 + AT_rich Low_complexity Low_complexity 1 24 0 379 242 74 95 chr1 126722024 126722214 -155471450 + MER5A DNA MER1_type 4 189 0 995 230 172 92 chr1 126722222 126722288 -155471376 - Charlie2 DNA MER1_type 0 2862 2803 966 82 0 22 chr1 126722288 126722422 -155471242 + FLAM_C SINE Alu 1 131 -2 995 230 172 92 chr1 126722422 126723276 -155470388 - Charlie2 DNA MER1_type -59 2803 1869 694 232 33 116 chr1 126723280 126723616 -155470048 - Charlie2 DNA MER1_type -2536 326 19 304 277 164 38 chr1 126723790 126723958 -155469706 - MIR SINE MIR -62 200 17 1941 158 37 60 chr1 126724680 126725111 -155468553 - L1MA7 LINE L1 -223 6068 5648 997 191 48 4 chr1 126725111 126725342 -155468322 + L1MA7 LINE L1 6051 6291 0 477 263 51 17 chr1 126726108 126726283 -155467381 - L1MA9 LINE L1 -37 6275 6095 21 0 0 0 chr1 126726423 126726444 -155467220 + AT_rich Low_complexity Low_complexity 1 21 0 3498 128 30 96 chr1 126726569 126726758 -155466906 - LTR8A LTR ERV1 0 727 527 1866 134 58 0 chr1 126726758 126727049 -155466615 - AluSg SINE Alu -1 309 2 3498 128 30 96 chr1 126727049 126727633 -155466031 - LTR8A LTR ERV1 -200 527 5 1585 154 116 29 chr1 126727633 126727977 -155465687 + THE1C LTR MaLR 1 375 0 2268 88 11 0 chr1 126728032 126728339 -155465325 + AluSp SINE Alu 1 310 0 202 283 117 17 chr1 126728510 126728570 -155465094 - L2 LINE L2 -20 3252 3187 1965 158 130 0 chr1 126728624 126729055 -155464609 - L1MB7 LINE L1 -16 6168 5682 352 89 18 0 chr1 126729100 126729156 -155464508 - MSTB LTR MaLR -51 375 319 259 311 101 0 chr1 126729872 126729991 -155463673 - L2 LINE L2 -5 3308 3178 2096 118 14 3 chr1 126730022 126730319 -155463345 - AluSx SINE Alu -12 300 1 218 318 85 69 chr1 126730383 126730572 -155463092 - L2 LINE L2 -164 3108 2917 1923 141 7 10 chr1 126730694 126730998 -155462666 + AluJo SINE Alu 3 305 -7 198 200 75 0 chr1 126731038 126731078 -155462586 + MIR SINE MIR 219 261 -1 201 297 132 22 chr1 126731203 126731294 -155462370 - L2 LINE L2 -38 3234 3134 351 308 83 50 chr1 126731483 126731723 -155461941 - L2 LINE L2 -353 2961 2714 387 0 0 0 chr1 126731917 126731960 -155461704 + (TG)n Simple_repeat Simple_repeat 1 43 0 1134 184 139 37 chr1 126731967 126732240 -155461424 - AluJo SINE Alu 0 310 13 216 0 0 0 chr1 126732335 126732359 -155461305 + (T)n Simple_repeat Simple_repeat 1 24 0 2305 119 3 0 chr1 126732399 126732711 -155460953 - AluSp SINE Alu 0 313 1 256 250 129 29 chr1 126732724 126732864 -155460800 - L1MC/D LINE L1 -1959 5849 5696 * 2545 224 48 40 chr1 126732860 126733632 -155460032 + L1ME1 LINE L1 5381 6158 -8 545 283 99 43 chr1 126733685 126734059 -155459605 - L1MC/D LINE L1 -460 5661 5267 1531 190 3 21 chr1 126734666 126734950 -155458714 + AluJb SINE Alu 24 302 -10 1384 151 82 127 chr1 126735862 126736278 -155457386 - MLT2D LTR ERVL 0 414 18 2301 224 104 82 chr1 126737348 126738612 -155455052 - L1MC5 LINE L1 -47 7914 6624 222 37 0 0 chr1 126738616 126738643 -155455021 + (TG)n Simple_repeat Simple_repeat 1 27 0 212 333 127 13 chr1 126740849 126740999 -155452665 + MIR3 SINE MIR 30 196 -12 2038 129 0 35 chr1 126741542 126741852 -155451812 + AluSx SINE Alu 1 299 -13 1923 132 7 20 chr1 126742024 126742162 -155451502 + AluSx SINE Alu 1 139 -173 1646 160 42 7 chr1 126742162 126742450 -155451214 + AluSx SINE Alu 1 298 -14 1923 132 7 20 chr1 126742450 126742606 -155451058 + AluSx SINE Alu 139 291 -21 257 247 80 63 chr1 126743357 126743584 -155450080 + L2 LINE L2 2220 2452 -862 570 328 39 6 chr1 126743630 126743810 -155449854 + L2 LINE L2 2591 2776 -538 186 43 0 0 chr1 126744202 126744225 -155449439 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 315 344 158 6 chr1 126744636 126744664 -155449000 + MIR SINE MIR 10 32 -230 2425 37 41 0 chr1 126744664 126744959 -155448705 + AluY SINE Alu 1 307 -4 315 344 158 6 chr1 126744959 126745113 -155448551 + MIR SINE MIR 32 220 -42 1850 122 28 31 chr1 126745485 126745773 -155447891 + AluSx SINE Alu 1 287 -25 25 51 0 0 chr1 126746011 126746050 -155447614 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr1 126746606 126746631 -155447033 + AT_rich Low_complexity Low_complexity 1 25 0 249 109 0 0 chr1 126747043 126747089 -155446575 + (T)n Simple_repeat Simple_repeat 1 46 0 240 100 0 0 chr1 126748367 126748407 -155445257 + (A)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr1 126750222 126750243 -155443421 + AT_rich Low_complexity Low_complexity 1 21 0 201 171 0 0 chr1 126752850 126752885 -155440779 + (TTA)n Simple_repeat Simple_repeat 2 36 0 330 291 25 0 chr1 126753280 126753359 -155440305 - L2 LINE L2 -50 3222 3142 296 312 162 64 chr1 126753646 126754586 -155439078 - L2 LINE L2 -508 2806 1775 309 335 76 30 chr1 126754696 126754893 -155438771 + MIR SINE MIR 57 262 0 293 217 23 93 chr1 126755253 126755382 -155438282 + L1MEd LINE L1 9 128 -5991 349 308 8 0 chr1 126755401 126755518 -155438146 + L1MC4 LINE L1 7446 7563 -479 350 367 119 19 chr1 126755577 126755956 -155437708 + L1MC4 LINE L1 7625 8041 -1 1389 163 14 78 chr1 126756327 126756610 -155437054 + AluJb SINE Alu 33 297 -15 429 307 172 29 chr1 126756611 126756849 -155436815 + L1MEd LINE L1 546 817 -5302 342 297 116 35 chr1 126757052 126757284 -155436380 + L1MEd LINE L1 959 1209 -4910 229 279 194 4 chr1 126757400 126757637 -155436027 + L1MEd LINE L1 1314 1595 -4534 2306 110 0 7 chr1 126757717 126758026 -155435638 + AluSq SINE Alu 1 307 -6 270 0 0 0 chr1 126758026 126758056 -155435608 + (TA)n Simple_repeat Simple_repeat 2 31 0 849 154 0 8 chr1 126758082 126758212 -155435452 + FLAM_C SINE Alu 1 129 -4 2189 104 7 7 chr1 126758256 126758553 -155435111 + AluSx SINE Alu 1 297 -15 2709 275 118 28 chr1 126758696 126759927 -155433737 + L1M4b LINE L1 101 1220 -5739 1933 135 38 0 chr1 126759927 126760216 -155433448 + AluSx SINE Alu 1 300 -12 2709 275 118 28 chr1 126760216 126761047 -155432617 + L1M4b LINE L1 1220 2353 -4606 1879 167 3 23 chr1 126761429 126761734 -155431930 + AluJo SINE Alu 7 305 -7 2164 114 10 13 chr1 126761783 126762090 -155431574 + AluSg SINE Alu 1 306 -4 303 228 132 18 chr1 126762099 126762213 -155431451 + L1M4b LINE L1 2870 2996 -3963 5091 84 13 4 chr1 126762242 126762991 -155430673 - L1PB1 LINE L1 -1 6150 5395 3240 217 95 15 chr1 126762990 126763527 -155430137 + L1M4b LINE L1 3016 3509 -3448 * 2480 47 0 7 chr1 126763527 126763828 -155429836 + AluY SINE Alu 1 299 -12 3240 217 95 15 chr1 126763828 126764477 -155429187 + L1M4b LINE L1 3509 4297 -2660 1967 140 14 3 chr1 126764480 126764772 -155428892 + AluSx SINE Alu 1 295 -17 1361 189 137 3 chr1 126764772 126765158 -155428506 + L1M4b LINE L1 5000 5437 -1520 1115 163 154 40 chr1 126765168 126765395 -155428269 - AluJo SINE Alu -35 277 25 38 51 0 0 chr1 126765430 126765489 -155428175 + AT_rich Low_complexity Low_complexity 1 59 0 1016 158 126 125 chr1 126765566 126766004 -155427660 - LTR36 LTR ERV1 0 611 175 2232 124 0 19 chr1 126766004 126766318 -155427346 - AluSq SINE Alu -5 308 1 1160 202 9 92 chr1 126766318 126766645 -155427019 - AluJb SINE Alu -1 301 2 1016 158 126 125 chr1 126766645 126766773 -155426891 - LTR36 LTR ERV1 -435 176 2 356 319 47 54 chr1 126766791 126767252 -155426412 - LTR36-int LTR ERV1 -18 8102 6621 307 215 76 0 chr1 126767271 126767350 -155426314 - MER49 LTR ERV1 -163 760 676 848 183 83 48 chr1 126767356 126767586 -155426078 - LTR36-int LTR ERV1 -181 6150 5913 7211 171 96 26 chr1 126767616 126769396 -155424268 - LTR36-int LTR ERV1 -578 5753 3851 741 180 0 0 chr1 126769397 126769525 -155424139 + AluSq/x SINE Alu 1 128 -185 1713 118 12 23 chr1 126769525 126769858 -155423806 - MER4A LTR ERV1 -16 648 261 633 82 10 20 chr1 126769866 126769964 -155423700 - MER4A LTR ERV1 -567 97 1 16047 116 51 53 chr1 126769966 126770629 -155423035 - MER4A-int LTR ERV1 -1 6597 5934 2027 125 7 0 chr1 126770629 126770916 -155422748 + AluY SINE Alu 1 289 -22 16047 116 51 53 chr1 126770916 126770930 -155422734 - MER4A-int LTR ERV1 -664 5934 5921 2104 132 0 10 chr1 126770930 126771219 -155422445 - AluSg SINE Alu -20 290 5 16047 116 51 53 chr1 126771219 126771770 -155421894 - MER4A-int LTR ERV1 -677 5921 5370 1934 146 28 0 chr1 126771770 126772058 -155421606 + AluSp SINE Alu 1 296 -17 16047 116 51 53 chr1 126772058 126773872 -155419792 - MER4A-int LTR ERV1 -1228 5370 3554 2178 120 3 0 chr1 126773872 126774164 -155419500 - AluSg SINE Alu -17 293 1 16047 116 51 53 chr1 126774164 126774693 -155418971 - MER4A-int LTR ERV1 -3044 3554 3025 2373 98 3 0 chr1 126774693 126774990 -155418674 + AluSp SINE Alu 1 298 -15 16047 116 51 53 chr1 126774990 126776395 -155417269 - MER4A-int LTR ERV1 -3573 3025 696 1834 182 67 16 chr1 126776395 126776838 -155416826 + LTR2B LTR ERV1 1 490 0 2873 144 43 59 chr1 126776838 126778483 -155415181 + Harlequin LTR ERV1 1 1422 -5474 * 16790 49 0 8 chr1 126778472 126780632 -155413032 + Harlequin LTR ERV1 1807 3949 -2947 2051 161 0 0 chr1 126780612 126780948 -155412716 + Harlequin LTR ERV1 4561 4896 -2917 * 573 178 0 10 chr1 126780943 126781044 -155412620 + Harlequin LTR ERV1 4997 5096 -2717 * 3441 162 0 2 chr1 126781033 126781608 -155412056 + Harlequin LTR ERV1 5469 6042 -1771 * 6430 116 5 2 chr1 126781602 126782558 -155411106 + Harlequin LTR ERV1 5937 6895 -1 1775 197 63 27 chr1 126782579 126783020 -155410644 + LTR2B LTR ERV1 34 490 0 3222 150 104 111 chr1 126783027 126783513 -155410151 - MER4A-int LTR ERV1 -5592 1006 518 2156 136 0 0 chr1 126783513 126783815 -155409849 - AluSg SINE Alu -8 302 1 3222 150 104 111 chr1 126783815 126784255 -155409409 - MER4A-int LTR ERV1 -6080 518 85 2304 108 0 0 chr1 126784255 126784561 -155409103 + AluSg SINE Alu 1 306 -4 3222 150 104 111 chr1 126784561 126784646 -155409018 - MER4A-int LTR ERV1 -6513 85 1 1806 113 12 22 chr1 126784651 126784998 -155408666 - MER4A LTR ERV1 -2 662 261 600 112 0 10 chr1 126785006 126785104 -155408560 - MER4A LTR ERV1 -567 97 1 1111 152 23 12 chr1 126785104 126785275 -155408389 + AluSg/x SINE Alu 107 279 -31 195 42 0 0 chr1 126785276 126785300 -155408364 + (GA)n Simple_repeat Simple_repeat 2 25 0 3412 143 17 2 chr1 126785300 126785889 -155407775 - MER83A-int LTR ERV1 -1572 3308 2711 1648 166 21 0 chr1 126785885 126786168 -155407496 - MER83A-int LTR ERV1 -2958 1922 1634 * 595 116 0 11 chr1 126786157 126786252 -155407412 - MER83A-int LTR ERV1 -2530 4068 3975 * 3405 140 96 71 chr1 126786243 126786471 -155407193 - MER83A-int LTR ERV1 -6310 1810 1589 1291 138 92 138 chr1 126786471 126786658 -155407006 - AluJb SINE Alu -22 290 121 548 14 14 0 chr1 126786658 126786727 -155406937 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 1291 138 92 138 chr1 126786727 126786843 -155406821 - AluJb SINE Alu -191 121 1 3405 140 96 71 chr1 126786843 126787519 -155406145 - MER83A-int LTR ERV1 -6531 1589 883 284 259 28 37 chr1 126787622 126787730 -155405934 - MER83A-int LTR ERV1 -2734 1551 1445 573 223 42 67 chr1 126788052 126788335 -155405329 + L1MC5 LINE L1 7251 7526 -435 2451 88 0 3 chr1 126788342 126788648 -155405016 + AluSx SINE Alu 1 305 -7 291 248 78 78 chr1 126788763 126788969 -155404695 + L1ME3A LINE L1 5965 6170 0 1993 152 7 3 chr1 126788973 126789276 -155404388 - AluSx SINE Alu -8 304 1 2492 71 0 0 chr1 126789285 126789581 -155404083 - AluY SINE Alu -15 296 1 2214 94 19 7 chr1 126789633 126789940 -155403724 - AluSx SINE Alu -1 311 1 289 275 147 35 chr1 126789952 126790118 -155403546 + L1M4 LINE L1 3351 3558 -2588 2117 137 0 13 chr1 126790118 126790433 -155403231 + AluSx SINE Alu 1 311 -1 289 275 147 35 chr1 126790433 126790524 -155403140 + L1M4 LINE L1 3558 3637 -2509 1822 165 7 3 chr1 126790921 126791218 -155402446 - AluJb SINE Alu -6 306 9 272 338 103 0 chr1 126793371 126793516 -155400148 - MIR3 SINE MIR -13 195 36 241 204 0 0 chr1 126793513 126793557 -155400107 - L2 LINE L2 -5 3267 3224 * 901 293 16 12 chr1 126794146 126794399 -155399265 - MIR SINE MIR 0 262 9 363 200 298 69 chr1 126795365 126795670 -155397994 + MLT1J LTR MaLR 81 455 -56 3255 177 42 5 chr1 126796015 126796658 -155397006 + LTR65 LTR ERV1 1 667 -2 369 0 0 0 chr1 126798741 126798782 -155394882 + (CA)n Simple_repeat Simple_repeat 2 42 0 2095 106 6 34 chr1 126800467 126800788 -155392876 - AluSx SINE Alu 0 312 1 304 278 74 0 chr1 126800790 126800898 -155392766 - MIR SINE MIR -68 194 79 445 337 87 26 chr1 126800903 126801250 -155392414 - MLT1I LTR MaLR -2 407 40 192 179 0 0 chr1 126801337 126801376 -155392288 + C-rich Low_complexity Low_complexity 2 40 0 2305 106 0 22 chr1 126801809 126802162 -155391502 + AluSx SINE Alu 1 312 0 905 171 13 0 chr1 126802190 126802342 -155391322 + FRAM SINE Alu 1 154 -22 1961 147 3 0 chr1 126802359 126802644 -155391020 + AluSx SINE Alu 4 289 -23 264 254 32 132 chr1 126803034 126803314 -155390350 - LTR67 LTR ERVL 0 557 306 269 163 61 0 chr1 126803514 126803563 -155390101 + MER58 DNA MER1_type 2345 2396 -24 222 118 0 0 chr1 126803685 126803719 -155389945 + (T)n Simple_repeat Simple_repeat 1 34 0 738 167 9 0 chr1 126804231 126804345 -155389319 - FLAM_A SINE Alu -18 115 1 805 263 130 45 chr1 126804591 126804873 -155388791 - MLT1J LTR MaLR -15 496 177 1531 186 8 88 chr1 126804873 126805270 -155388394 + MLT1A1 LTR MaLR 1 365 0 805 263 130 45 chr1 126805270 126805341 -155388323 - MLT1J LTR MaLR -334 177 113 1152 257 112 5 chr1 126805930 126806315 -155387349 + LTR16A LTR ERVL 2 427 -23 1609 193 30 0 chr1 126806662 126806932 -155386732 - AluJb SINE Alu -30 282 5 3402 136 80 12 chr1 126806997 126807570 -155386094 + LTR9 LTR ERV1 1 612 0 721 283 96 33 chr1 126808028 126808410 -155385254 - LTR67 LTR ERVL -2 555 97 316 284 76 92 chr1 126808572 126808776 -155384888 + L2 LINE L2 2303 2502 -812 1948 144 17 0 chr1 126808776 126809075 -155384589 - AluSg SINE Alu -2 308 5 316 284 76 92 chr1 126809075 126809173 -155384491 + L2 LINE L2 2502 2600 -714 2213 108 7 0 chr1 126809946 126810242 -155383422 + AluSc SINE Alu 1 298 -11 341 302 24 8 chr1 126810273 126810399 -155383265 + L2 LINE L2 2925 3052 -220 2410 187 93 8 chr1 126810750 126810785 -155382879 - MLT2B2 LTR ERVL -4 511 480 565 76 22 0 chr1 126810785 126810877 -155382787 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 2410 187 93 8 chr1 126810877 126811095 -155382569 - MLT2B2 LTR ERVL -35 480 282 189 0 0 0 chr1 126811095 126811116 -155382548 + (GA)n Simple_repeat Simple_repeat 2 22 0 2410 187 93 8 chr1 126811116 126811332 -155382332 - MLT2B2 LTR ERVL -233 282 1 2442 194 114 31 chr1 126812644 126813295 -155380369 + L1MC/D LINE L1 2345 3049 -3097 25 0 0 0 chr1 126813322 126813347 -155380317 + AT_rich Low_complexity Low_complexity 1 25 0 401 315 71 41 chr1 126813359 126813654 -155380010 - L2 LINE L2 -60 3253 2950 1021 226 103 56 chr1 126814217 126814512 -155379152 - Charlie1a DNA MER1_type -2427 334 21 1406 174 17 158 chr1 126814512 126814973 -155378691 + MSTD LTR MaLR 1 396 0 1021 226 103 56 chr1 126814973 126814996 -155378668 - Charlie1a DNA MER1_type -2740 21 1 399 230 0 11 chr1 126815087 126815174 -155378490 - LTR67 LTR ERVL -40 517 432 250 273 34 148 chr1 126815399 126815608 -155378056 - LTR67 LTR ERVL -368 189 5 589 346 36 9 chr1 126815621 126815953 -155377711 - L2 LINE L2 -1062 2252 1912 485 319 46 49 chr1 126816513 126816798 -155376866 + L2 LINE L2 2985 3268 -4 207 0 0 0 chr1 126817789 126817812 -155375852 + (A)n Simple_repeat Simple_repeat 1 23 0 3545 117 47 2 chr1 126818406 126818912 -155374752 - MER1A DNA MER1_type 0 529 1 180 274 161 0 chr1 126819372 126819434 -155374230 - L2 LINE L2 0 3272 3201 4712 206 75 17 chr1 126819449 126820688 -155372976 - L1M4 LINE L1 -1206 4940 3630 725 251 94 11 chr1 126820724 126820999 -155372665 - L1M4 LINE L1 -2572 3574 3277 645 212 7 0 chr1 126821090 126821227 -155372437 + L1MC/D LINE L1 4109 4246 -1900 768 275 220 13 chr1 126821227 126821910 -155371754 - L2 LINE L2 -2444 870 47 248 298 48 24 chr1 126823734 126823858 -155369806 + L1MC/D LINE L1 5508 5634 -487 1918 201 69 33 chr1 126824275 126824797 -155368867 + MER74A LTR ERVL 1 622 0 356 229 124 0 chr1 126825063 126825168 -155368496 + MER103 DNA DNA 30 147 -19 237 151 0 0 chr1 126827969 126828022 -155365642 - LTR66 LTR ERVL -164 446 394 2151 101 0 0 chr1 126828050 126828317 -155365347 - AluSg SINE Alu -43 267 1 231 178 22 0 chr1 126828320 126828365 -155365299 + L1MC/D LINE L1 5856 5901 -1907 361 290 38 38 chr1 126828386 126828517 -155365147 - MLT1J1 LTR MaLR -62 384 254 * 809 228 46 21 chr1 126828512 126828736 -155364928 - MLT1J2 LTR MaLR -206 240 7 2234 133 0 0 chr1 126828878 126829186 -155364478 - AluSx SINE Alu -4 308 1 1868 150 24 58 chr1 126829430 126829811 -155363853 - THE1C LTR MaLR -7 368 1 1158 202 14 5 chr1 126830065 126830278 -155363386 - MER20 DNA MER1_type -4 215 1 217 231 0 0 chr1 126830278 126830330 -155363334 + MIR SINE MIR 102 153 -109 395 131 0 0 chr1 126830485 126830546 -155363118 + AluJ/FLAM SINE Alu 1 61 -241 207 0 0 0 chr1 126830552 126830575 -155363089 + (TAA)n Simple_repeat Simple_repeat 1 23 0 706 250 86 27 chr1 126830588 126830808 -155362856 - MLT1J2 LTR MaLR -153 297 65 192 40 0 0 chr1 126830859 126830884 -155362780 + (TG)n Simple_repeat Simple_repeat 1 25 0 2327 102 57 25 chr1 126831771 126832124 -155361540 + THE1B LTR MaLR 1 364 0 2222 105 0 43 chr1 126832719 126833076 -155360588 - AluSx SINE Alu 0 343 1 1374 213 113 27 chr1 126833202 126833610 -155360054 - LTR47B LTR ERVL 0 443 1 454 337 0 0 chr1 126833638 126833807 -155359857 + (TG)n Simple_repeat Simple_repeat 2 170 0 5146 179 26 1 chr1 126833842 126834711 -155358953 + MER54A LTR ERVL 8 898 -3 3211 42 3 0 chr1 126835464 126835849 -155357815 - L1PA4 LINE L1 0 6155 5770 44188 47 5 1 chr1 126835867 126841996 -155351668 - L1PA3 LINE L1 0 6155 1 1478 188 18 72 chr1 126842002 126842402 -155351262 + MER113 DNA MER1_type? 90 467 -54 637 269 81 45 chr1 126842437 126842879 -155350785 + HAL1b LINE L1 52 509 -839 858 198 96 15 chr1 126842881 126843078 -155350586 + AluJb SINE Alu 86 298 -14 2510 52 7 10 chr1 126843129 126843439 -155350225 - AluY SINE Alu -2 309 1 700 291 101 17 chr1 126843439 126843855 -155349809 + HAL1b LINE L1 538 988 -360 1672 248 81 25 chr1 126843855 126844155 -155349509 - MLT1G1 LTR MaLR 0 595 313 2462 158 70 5 chr1 126844155 126844555 -155349109 - MSTB LTR MaLR 0 426 1 1672 248 81 25 chr1 126844555 126844764 -155348900 - MLT1G1 LTR MaLR -282 313 21 467 254 115 38 chr1 126844806 126845093 -155348571 + HAL1b LINE L1 1040 1348 0 304 236 113 28 chr1 126845181 126845287 -155348377 - MIR3 SINE MIR -17 191 77 235 242 30 30 chr1 126846654 126846720 -155346944 - L2 LINE L2 -7 3265 3200 222 318 55 68 chr1 126847013 126847233 -155346431 - L2 LINE L2 -214 3058 2842 308 260 140 0 chr1 126848219 126848319 -155345345 - MIR SINE MIR -118 144 31 2081 185 3 8 chr1 126848503 126848871 -155344793 - MLT2D LTR ERVL -48 366 1 4561 246 82 83 chr1 126848872 126851255 -155342409 - HAL1 LINE L1 -123 2384 3 187 270 126 45 chr1 126851937 126852048 -155341616 + L2 LINE L2 3151 3270 -2 1209 241 83 19 chr1 126852717 126853091 -155340573 + L1ME1 LINE L1 5764 6161 -5 182 271 328 8 chr1 126853819 126853941 -155339723 - MIR SINE MIR -65 197 37 262 308 0 26 chr1 126853964 126854081 -155339583 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 672 192 170 16 chr1 126854082 126854271 -155339393 - MIR SINE MIR -17 245 22 919 243 98 13 chr1 126855218 126855523 -155338141 + L2 LINE L2 2474 2804 -510 3158 88 25 7 chr1 126855535 126855966 -155337698 - MLT2A1 LTR ERVL -5 439 1 918 271 88 37 chr1 126856010 126856387 -155337277 + L2 LINE L2 2913 3308 -5 455 249 104 26 chr1 126856978 126857171 -155336493 - L2 LINE L2 -4 3309 3102 1590 189 10 17 chr1 126857243 126857540 -155336124 + AluJo SINE Alu 1 295 -17 1783 236 124 23 chr1 126857879 126858494 -155335170 + Charlie7 DNA MER1_type 11 687 -1925 2639 196 50 4 chr1 126858683 126859148 -155334516 + MER66B LTR ERV1 1 486 0 545 254 67 24 chr1 126859956 126860121 -155333543 + MIR SINE MIR 91 262 0 417 263 174 21 chr1 126860306 126860496 -155333168 + MIR SINE MIR 28 246 -16 273 310 69 29 chr1 126860543 126860717 -155332947 - MIR SINE MIR -3 259 79 383 182 104 71 chr1 126861450 126861604 -155332060 - L1ME4a LINE L1 -1 6120 5962 241 254 60 0 chr1 126861768 126861835 -155331829 - L1ME4a LINE L1 -417 5745 5675 279 247 0 0 chr1 126861959 126862032 -155331632 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 248 231 0 0 chr1 126862035 126862087 -155331577 + L1MC4 LINE L1 6653 6704 -1338 438 311 72 0 chr1 126862087 126862254 -155331410 - L2 LINE L2 -26 3287 3109 219 362 0 0 chr1 126862318 126862387 -155331277 - L2 LINE L2 0 3313 3245 191 382 29 7 chr1 126862468 126862604 -155331060 + L2 LINE L2 3163 3301 -12 294 29 0 0 chr1 126863122 126863157 -155330507 + (CAA)n Simple_repeat Simple_repeat 2 36 0 515 300 34 32 chr1 126863236 126863468 -155330196 - MIR SINE MIR -17 245 21 1578 127 25 123 chr1 126863593 126863860 -155329804 - AluJb SINE Alu -20 292 61 2279 101 78 32 chr1 126863860 126864207 -155329457 + THE1B LTR MaLR 2 364 0 1578 127 25 123 chr1 126864207 126864263 -155329401 - AluJb SINE Alu -251 61 1 6088 122 42 13 chr1 126864266 126865249 -155328415 - L1MC1 LINE L1 0 6333 5323 830 190 0 46 chr1 126865250 126865424 -155328240 - FRAM SINE Alu -3 173 8 5355 215 39 10 chr1 126865439 126866685 -155326979 - L1MCa LINE L1 -2002 4424 3144 2018 203 9 156 chr1 126867535 126867808 -155325856 - L1MCa LINE L1 -3267 3159 2847 186 43 0 0 chr1 126867808 126867831 -155325833 + (TTG)n Simple_repeat Simple_repeat 2 24 0 948 125 0 0 chr1 126867835 126867963 -155325701 - FRAM SINE Alu -30 146 19 2018 203 9 156 chr1 126867963 126868606 -155325058 - L1MCa LINE L1 -3582 2844 2309 1362 110 31 0 chr1 126868610 126868801 -155324863 + MER7A DNA MER2_type 1 195 -151 1054 95 101 11 chr1 126868801 126868980 -155324684 - L1MCa LINE L1 -4299 2127 1933 1331 184 0 0 chr1 126868995 126869213 -155324451 + AluJb SINE Alu 31 248 -64 9302 138 30 17 chr1 126869216 126871026 -155322638 - L1MCa LINE L1 -4478 1948 24 254 238 63 0 chr1 126871420 126871483 -155322181 + L2 LINE L2 3206 3272 0 1904 141 0 4 chr1 126871712 126871981 -155321683 + AluSx SINE Alu 1 268 -44 180 0 0 0 chr1 126871991 126872011 -155321653 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 938 237 137 26 chr1 126872126 126872543 -155321121 - L1ME4a LINE L1 -11 6110 5648 21 0 0 0 chr1 126872749 126872770 -155320894 + AT_rich Low_complexity Low_complexity 1 21 0 413 247 0 0 chr1 126872811 126872904 -155320760 - L2 LINE L2 0 3313 3221 252 284 69 20 chr1 126874968 126875070 -155318594 + L2 LINE L2 3134 3240 -32 234 275 0 29 chr1 126875989 126876058 -155317606 + MIR SINE MIR 82 148 -60 295 287 54 0 chr1 126876718 126876802 -155316862 + MIR SINE MIR 67 153 -63 2558 92 27 0 chr1 126876961 126877296 -155316368 - L1PA11 LINE L1 -14 6160 5817 2428 209 73 5 chr1 126877296 126877850 -155315814 + L1MB7 LINE L1 5593 6184 0 1448 244 88 70 chr1 126878207 126878826 -155314838 - MLT1G LTR MaLR 0 590 1 1454 270 145 45 chr1 126878827 126879017 -155314647 + L2 LINE L2 1314 1484 -1830 2215 126 53 31 chr1 126879017 126879373 -155314291 + THE1B LTR MaLR 1 364 0 1454 270 145 45 chr1 126879373 126879940 -155313724 + L2 LINE L2 1484 2147 -1167 1789 214 47 17 chr1 126879943 126880501 -155313163 + MLT2E LTR ERVL 1 628 0 541 271 34 24 chr1 126880765 126880972 -155312692 + ERVL-E LTR ERVL 319 527 -5237 321 219 0 52 chr1 126880984 126881080 -155312584 + L1MB8 LINE L1 6088 6178 0 608 252 38 6 chr1 126881081 126881240 -155312424 + ERVL-E LTR ERVL 534 697 -5067 1933 245 175 51 chr1 126881397 126882406 -155311258 + L2 LINE L2 2175 3313 0 483 321 40 90 chr1 126882579 126883295 -155310369 + L2 LINE L2 2575 3270 -2 451 254 44 0 chr1 126884643 126884757 -155308907 - MIR3 SINE MIR -6 202 84 610 327 90 0 chr1 126885474 126885697 -155307967 - MIR SINE MIR -6 256 14 207 287 0 43 chr1 126885716 126885810 -155307854 + MIR SINE MIR 166 255 -7 1845 204 70 61 chr1 126887558 126888069 -155305595 + MLT2B1 LTR ERVL 5 520 0 226 320 10 10 chr1 126888192 126888292 -155305372 + LTR67 LTR ERVL 125 224 -333 254 254 63 32 chr1 126888379 126888505 -155305159 + LTR67 LTR ERVL 428 557 0 345 323 159 5 chr1 126888681 126888870 -155304794 - MIR SINE MIR -20 242 25 370 265 51 8 chr1 126889042 126889159 -155304505 - LTR67 LTR ERVL -24 533 412 198 273 0 0 chr1 126889614 126889658 -155304006 - L3 LINE CR1 -6 1571 1528 523 271 40 20 chr1 126889837 126889988 -155303676 - MIR3 SINE MIR -50 158 5 444 320 113 17 chr1 126890062 126890293 -155303371 + L2 LINE L2 3000 3252 -61 226 269 39 0 chr1 126890437 126890515 -155303149 + MIR SINE MIR 112 192 -70 274 213 147 47 chr1 126890713 126890863 -155302801 - L1ME4a LINE L1 -16 6105 5941 563 222 26 26 chr1 126890965 126891159 -155302505 - L1M4 LINE L1 -3093 3053 2860 410 132 13 0 chr1 126891318 126891394 -155302270 + (TG)n Simple_repeat Simple_repeat 2 78 0 1494 271 133 30 chr1 126891465 126891963 -155301701 + MLT1H LTR MaLR 1 549 0 231 260 96 0 chr1 126891978 126892051 -155301613 + MIR SINE MIR 183 262 0 693 261 123 11 chr1 126892077 126892353 -155301311 - L1ME4a LINE L1 -318 5803 5497 1031 238 37 7 chr1 126892365 126892634 -155301030 - L1ME LINE L1 -303 5818 5542 564 206 55 27 chr1 126892666 126892812 -155300852 - L1MC5 LINE L1 -51 7910 7761 236 283 71 50 chr1 126893678 126893777 -155299887 + MIR SINE MIR 5 105 -103 569 259 0 65 chr1 126893794 126893889 -155299775 - L2 LINE L2 0 3272 3187 2203 110 3 0 chr1 126893889 126894190 -155299474 + AluSc SINE Alu 1 302 -7 569 259 0 65 chr1 126894190 126894233 -155299431 - L2 LINE L2 -85 3187 3143 184 388 75 0 chr1 126894847 126894994 -155298670 - L2 LINE L2 -1004 2310 2153 209 315 0 0 chr1 126895036 126895090 -155298574 + MIR SINE MIR 180 233 -29 913 184 0 46 chr1 126895625 126895799 -155297865 + MER41D LTR ERV1 392 557 0 33494 97 11 63 chr1 126897745 126897770 -155295894 - L1PA7 LINE L1 0 6154 6129 2117 71 7 4 chr1 126897770 126898050 -155295614 - AluY SINE Alu -17 294 14 33494 97 11 63 chr1 126898050 126902245 -155291419 - L1PA7 LINE L1 -25 6129 1716 6255 68 5 284 chr1 126902245 126904137 -155289527 - SVA Other Other -2 1384 22 33494 97 11 63 chr1 126904137 126904254 -155289410 - L1PA7 LINE L1 -4438 1716 1594 2380 76 0 0 chr1 126904254 126904558 -155289106 + AluY SINE Alu 1 304 -7 33494 97 11 63 chr1 126904558 126906717 -155286947 - L1PA7 LINE L1 -4560 1594 12 330 270 68 34 chr1 126906956 126907104 -155286560 - MER5A DNA MER1_type -2 187 35 * 414 290 24 8 chr1 126906997 126907121 -155286543 + MER5A DNA MER1_type 58 183 -6 987 171 57 5 chr1 126907135 126907328 -155286336 - MER3 DNA MER1_type 0 209 7 751 295 17 0 chr1 126907623 126907796 -155285868 - MER91A DNA MER1_type -20 176 1 255 323 80 65 chr1 126907869 126908284 -155285380 - L2 LINE L2 -27 3245 2825 22 0 0 0 chr1 126908403 126908425 -155285239 + AT_rich Low_complexity Low_complexity 1 22 0 258 281 50 33 chr1 126908425 126908546 -155285118 - MIR SINE MIR -56 206 84 887 186 0 0 chr1 126908597 126908753 -155284911 + FAM SINE Alu 10 165 -20 400 250 208 24 chr1 126908767 126908935 -155284729 - L1ME4a LINE L1 -1 6120 5922 752 248 101 62 chr1 126908941 126909009 -155284655 - L1ME4a LINE L1 -153 5968 5904 1714 151 0 53 chr1 126909009 126909327 -155284337 - AluJb SINE Alu -11 301 1 752 248 101 62 chr1 126909327 126909713 -155283951 - L1ME4a LINE L1 -217 5904 5496 209 280 0 0 chr1 126909812 126909862 -155283802 + (TG)n Simple_repeat Simple_repeat 2 51 0 390 259 62 15 chr1 126911193 126911377 -155282287 + MIR3 SINE MIR 14 209 -53 5745 199 69 15 chr1 126911484 126912417 -155281247 - Charlie1a DNA MER1_type -1319 1442 410 252 0 0 0 chr1 126912417 126912445 -155281219 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 5745 199 69 15 chr1 126912445 126912879 -155280785 - Charlie1a DNA MER1_type -2351 410 1 590 250 98 43 chr1 126913456 126913712 -155279952 + MER102b DNA MER1_type 72 341 0 1151 134 0 0 chr1 126914039 126914210 -155279454 + FRAM SINE Alu 1 166 -10 405 133 0 0 chr1 126915049 126915124 -155278540 + (TCCCC)n Simple_repeat Simple_repeat 2 76 0 280 293 244 6 chr1 126915132 126915296 -155278368 + L2 LINE L2 2554 2756 -558 585 228 82 44 chr1 126915309 126915515 -155278149 + L1ME3A LINE L1 5952 6165 -5 219 250 78 0 chr1 126916406 126916470 -155277194 + L2 LINE L2 3198 3266 -6 198 344 52 10 chr1 126916558 126916654 -155277010 - MIR SINE MIR -161 101 2 306 271 82 0 chr1 126916980 126917065 -155276599 - MLT1L LTR MaLR -8 607 516 2155 125 0 0 chr1 126917066 126917371 -155276293 + AluSx SINE Alu 1 305 -7 1168 77 0 0 chr1 126917438 126917581 -155276083 - AluSq/x SINE Alu -169 143 1 225 0 0 0 chr1 126918395 126918420 -155275244 + (CA)n Simple_repeat Simple_repeat 2 26 0 231 376 37 49 chr1 126918781 126919105 -155274559 + L2 LINE L2 2932 3251 -21 273 289 13 0 chr1 126919336 126919412 -155274252 + L2 LINE L2 3237 3313 0 1537 224 20 6 chr1 126919730 126920082 -155273582 - Zaphod DNA AcHobo -80 3951 3595 * 1963 228 70 86 chr1 126920080 126920404 -155273260 - Zaphod DNA AcHobo -3041 990 662 857 169 185 0 chr1 126920404 126920588 -155273076 + MER20 DNA MER1_type 2 219 0 360 0 0 0 chr1 126920591 126920631 -155273033 + (CA)n Simple_repeat Simple_repeat 2 41 0 1963 228 70 86 chr1 126920631 126920726 -155272938 - Zaphod DNA AcHobo -3371 660 565 324 0 0 0 chr1 126920726 126920762 -155272902 + (CA)n Simple_repeat Simple_repeat 2 37 0 1963 228 70 86 chr1 126920762 126921306 -155272358 - Zaphod DNA AcHobo -3466 565 37 458 258 66 34 chr1 126921954 126922135 -155271529 - MIR SINE MIR -44 218 33 288 0 0 0 chr1 126922881 126922913 -155270751 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 4253 256 142 12 chr1 126922914 126924269 -155269395 - L2 LINE L2 -14 3299 1652 2065 95 0 63 chr1 126924269 126924586 -155269078 - AluSg SINE Alu -13 297 1 4253 256 142 12 chr1 126924586 126924955 -155268709 - L2 LINE L2 -1661 1652 1332 1738 174 3 7 chr1 126925098 126925408 -155268256 - AluJo SINE Alu -3 309 1 966 251 83 52 chr1 126925438 126926092 -155267572 - L1ME4a LINE L1 -2 6119 5409 234 243 46 26 chr1 126926808 126926838 -155266826 + (CA)n Simple_repeat Simple_repeat 1 29 -126 189 107 0 0 chr1 126926838 126926866 -155266798 + (CCA)n Simple_repeat Simple_repeat 2 29 0 234 243 46 26 chr1 126926866 126926987 -155266677 + (CA)n Simple_repeat Simple_repeat 29 155 0 358 201 44 31 chr1 126927030 126927237 -155266427 + (CA)n Simple_repeat Simple_repeat 1 209 0 470 252 243 9 chr1 126928214 126928424 -155265240 + MIR SINE MIR 4 262 0 192 173 136 99 chr1 126929195 126929276 -155264388 - L2 LINE L2 -20 3293 3210 28 0 0 0 chr1 126929693 126929721 -155263943 + AT_rich Low_complexity Low_complexity 1 28 0 413 346 0 20 chr1 126930645 126930798 -155262866 + MER5A DNA MER1_type 1 150 -39 287 234 104 13 chr1 126930922 126930999 -155262665 - MER63 DNA MER1_type 0 1062 979 408 176 0 77 chr1 126930999 126931090 -155262574 - MER63 DNA MER1_type -84 752 43 189 107 0 0 chr1 126931518 126931546 -155262118 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 326 344 78 0 chr1 126931584 126931712 -155261952 - MIR3 SINE MIR -45 163 26 240 326 179 25 chr1 126932552 126932920 -155260744 + L2 LINE L2 2552 2976 -338 204 290 81 0 chr1 126932949 126933011 -155260653 + L3 LINE CR1 460 526 -1051 1242 244 166 19 chr1 126933167 126933642 -155260022 + LTR67 LTR ERVL 3 547 -10 255 290 112 9 chr1 126933647 126933754 -155259910 + L2 LINE L2 3155 3272 0 367 278 22 0 chr1 126934200 126934290 -155259374 + L3 LINE CR1 435 526 -1051 528 247 188 71 chr1 126934295 126934709 -155258955 + MLT1J1 LTR MaLR 3 404 -46 650 319 97 4 chr1 126934756 126934982 -155258682 + L3 LINE CR1 530 776 -801 * 675 291 161 6 chr1 126934981 126935202 -155258462 - MIR SINE MIR 0 262 13 448 241 15 66 chr1 126935202 126935339 -155258325 - MER94 DNA DNA 0 134 5 675 291 161 6 chr1 126935339 126935352 -155258312 - MIR SINE MIR -249 13 3 1791 279 44 16 chr1 126935465 126936084 -155257580 + L3 LINE CR1 940 1575 -2 335 191 59 0 chr1 126936538 126936606 -155257058 - L2 LINE L2 -17 3255 3184 628 209 11 71 chr1 126936617 126936799 -155256865 - MLT1K LTR MaLR -15 573 403 360 298 29 29 chr1 126936920 126937024 -155256640 + L3 LINE CR1 530 633 -944 260 279 112 62 chr1 126937124 126937303 -155256361 - MLT1K LTR MaLR -317 271 84 474 286 64 26 chr1 126937456 126937690 -155255974 - L2 LINE L2 -177 3095 2853 629 311 31 16 chr1 126938236 126938429 -155255235 + MIR SINE MIR 23 218 -44 761 265 215 13 chr1 126938552 126939048 -155254616 - L2 LINE L2 -51 3262 2659 1435 246 131 52 chr1 126939106 126939603 -155254061 + MLT1F1 LTR MaLR 7 567 0 339 218 0 105 chr1 126939776 126939900 -155253764 + L1ME LINE L1 5566 5676 -490 251 204 0 20 chr1 126939902 126939951 -155253713 - AluY SINE Alu -115 186 139 240 241 0 0 chr1 126939961 126940019 -155253645 + L2 LINE L2 3108 3165 -148 885 158 61 0 chr1 126940021 126940186 -155253478 - AluJb SINE Alu -18 294 120 324 196 120 105 chr1 126940211 126940229 -155253435 + L1MCa LINE L1 1928 1944 -4482 2607 79 0 0 chr1 126940229 126940569 -155253095 - L1PB1 LINE L1 0 6151 5812 324 196 120 105 chr1 126940569 126940683 -155252981 + L1MCa LINE L1 1944 2062 -4364 * 346 237 145 15 chr1 126940571 126940702 -155252962 - L1MCa LINE L1 -4331 2095 1948 295 137 27 0 chr1 126940711 126940784 -155252880 + (TA)n Simple_repeat Simple_repeat 2 76 0 273 162 27 14 chr1 126940775 126940849 -155252815 + (CA)n Simple_repeat Simple_repeat 2 76 0 * 2304 81 0 0 chr1 126940855 126941151 -155252513 - AluSg SINE Alu -14 296 1 3432 72 43 0 chr1 126941151 126941637 -155252027 - L1P5 LINE L1 -367 5784 5278 812 191 0 0 chr1 126941637 126941778 -155251886 - AluJb SINE Alu -171 141 1 461 219 80 29 chr1 126941779 126941916 -155251748 + L2 LINE L2 3158 3301 -12 1745 164 7 16 chr1 126942508 126942812 -155250852 - AluJb SINE Alu -11 301 1 1934 131 3 0 chr1 126942823 126943113 -155250551 - AluSx SINE Alu -21 291 1 363 248 81 157 chr1 126943255 126943465 -155250199 - MER91A DNA MER1_type -1 195 2 212 178 0 22 chr1 126945510 126945555 -155248109 + T-rich Low_complexity Low_complexity 2 45 0 2035 178 93 30 chr1 126945559 126946019 -155247645 - L1MB2 LINE L1 -1 6170 5682 432 267 23 23 chr1 126947061 126947192 -155246472 + MIR SINE MIR 14 144 -118 839 296 52 34 chr1 126947269 126947593 -155246071 + MLT1K LTR MaLR 97 426 -162 309 298 68 52 chr1 126948089 126948280 -155245384 - MIR3 SINE MIR -3 205 12 582 15 0 0 chr1 126948366 126948433 -155245231 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 417 266 13 46 chr1 126949024 126949247 -155244417 + CT-rich Low_complexity Low_complexity 1 215 0 512 283 56 20 chr1 126950431 126950592 -155243072 + MIR SINE MIR 97 257 -5 7359 116 13 6 chr1 126950838 126951724 -155241940 + L1MA2 LINE L1 4359 5238 -1066 1994 122 79 20 chr1 126951724 126952078 -155241586 + THE1C LTR MaLR 1 375 0 7359 116 13 6 chr1 126952078 126953125 -155240539 + L1MA2 LINE L1 5238 6304 0 205 244 0 0 chr1 126954627 126954672 -155238992 + C-rich Low_complexity Low_complexity 4 48 0 384 291 127 0 chr1 126954744 126954878 -155238786 - MIR3 SINE MIR -21 187 37 343 339 8 15 chr1 126954941 126955071 -155238593 + MER5A DNA MER1_type 1 129 -60 550 260 95 6 chr1 126955388 126955557 -155238107 + MIR SINE MIR 18 201 -61 181 262 0 0 chr1 126955719 126955761 -155237903 + MIR SINE MIR 207 248 -14 734 100 0 0 chr1 126957224 126957324 -155236340 - AluSg/x SINE Alu -18 292 193 765 52 0 0 chr1 126957736 126957832 -155235832 + L1PA5 LINE L1 1 96 -6050 38789 45 1 1 chr1 126957832 126963358 -155230306 + L1PA5 LINE L1 623 6150 -4 999 219 10 0 chr1 126963474 126963670 -155229994 - MIR SINE MIR -64 198 1 1908 171 7 68 chr1 126963884 126964299 -155229365 + MLT1B LTR MaLR 1 390 0 288 320 10 10 chr1 126964600 126964703 -155228961 + MIR SINE MIR 47 149 -113 224 268 99 14 chr1 126965609 126965680 -155227984 - L2 LINE L2 -38 3234 3158 418 266 188 0 chr1 126965693 126965821 -155227843 - MER5A DNA MER1_type -3 186 35 302 190 106 155 chr1 126965879 126966021 -155227643 + MER5B DNA MER1_type 44 178 0 1759 182 124 45 chr1 126966041 126966509 -155227155 - MLT1D LTR MaLR 0 505 1 775 163 0 23 chr1 126966699 126966828 -155226836 - MER63 DNA MER1_type -84 752 1 482 246 246 0 chr1 126966969 126967111 -155226553 - MER5A DNA MER1_type 0 189 13 1319 281 80 31 chr1 126967158 126967207 -155226457 + Charlie7 DNA MER1_type 44 89 -2523 465 208 83 36 chr1 126967207 126967375 -155226289 - MER104 DNA MER2_type 0 180 5 1319 281 80 31 chr1 126967375 126967941 -155225723 + Charlie7 DNA MER1_type 89 689 -1923 239 193 0 53 chr1 126967940 126967997 -155225667 + Charlie7 DNA MER1_type 2509 2562 -50 * 22 0 0 0 chr1 126969279 126969301 -155224363 + AT_rich Low_complexity Low_complexity 1 22 0 357 293 106 90 chr1 126969313 126969569 -155224095 + L2 LINE L2 3004 3263 -9 726 252 150 31 chr1 126970115 126970409 -155223255 + L3 LINE CR1 1161 1489 -88 270 279 12 12 chr1 126971398 126971484 -155222180 + L3 LINE CR1 1403 1488 -89 418 239 72 29 chr1 126972932 126973070 -155220594 - L2 LINE L2 -12 3301 3158 774 206 0 7 chr1 126973072 126973213 -155220451 + AluJb SINE Alu 2 141 -171 2266 133 43 0 chr1 126973213 126973604 -155220060 + L1P5 LINE L1 5278 5685 -466 663 239 0 19 chr1 126973732 126973891 -155219773 + FAM SINE Alu 10 165 -20 666 257 101 62 chr1 126974079 126974147 -155219517 - L1ME4a LINE L1 -153 5968 5904 1554 163 0 59 chr1 126974147 126974467 -155219197 - AluJb SINE Alu -11 301 1 666 257 101 62 chr1 126974467 126974853 -155218811 - L1ME4a LINE L1 -217 5904 5496 209 280 0 0 chr1 126974952 126975002 -155218662 + (TG)n Simple_repeat Simple_repeat 2 51 0 200 204 23 0 chr1 126975692 126975736 -155217928 + (CCCCAG)n Simple_repeat Simple_repeat 3 47 0 184 273 45 30 chr1 126977945 126978011 -155215653 - MIR SINE MIR -66 142 76 205 230 289 15 chr1 126978092 126978223 -155215441 + MIR3 SINE MIR 17 175 -40 294 212 263 0 chr1 126978341 126978459 -155215205 - MIR SINE MIR -61 201 53 362 261 126 8 chr1 126979414 126979533 -155214131 - MIR SINE MIR -56 206 74 344 292 0 0 chr1 126979945 126980034 -155213630 + MIR SINE MIR 104 192 -70 2269 80 0 0 chr1 126980049 126980348 -155213316 - AluY SINE Alu -12 299 1 633 268 147 22 chr1 126980477 126980701 -155212963 + MIR SINE MIR 7 258 -4 202 280 80 0 chr1 126980922 126980997 -155212667 + MIR3 SINE MIR 109 189 -19 480 303 8 0 chr1 126982268 126982390 -155211274 - MIR3 SINE MIR -42 166 44 289 244 56 14 chr1 126982953 126983053 -155210611 - MIR SINE MIR -87 121 20 357 283 119 60 chr1 126984235 126984421 -155209243 + MIR SINE MIR 3 204 -58 2134 92 14 0 chr1 126984421 126984713 -155208951 + AluSg SINE Alu 1 296 -14 357 283 119 60 chr1 126984713 126984769 -155208895 + MIR SINE MIR 204 255 -7 374 240 221 13 chr1 126984889 126985043 -155208621 - MER5A DNA MER1_type 0 189 4 322 345 51 9 chr1 126985420 126985560 -155208104 - MER5A DNA MER1_type -7 182 25 441 225 28 106 chr1 126985742 126985829 -155207835 - L2 LINE L2 -2 3270 3197 588 233 147 0 chr1 126985829 126985979 -155207685 + MER96 DNA MER1_type 4 175 0 441 225 28 106 chr1 126985979 126986033 -155207631 - L2 LINE L2 -75 3197 3140 1369 273 169 18 chr1 126986067 126986900 -155206764 - L2 LINE L2 -322 2991 2025 254 211 105 0 chr1 126988386 126988462 -155205202 - MIR SINE MIR -40 222 139 241 288 54 76 chr1 126988551 126988735 -155204929 - L2 LINE L2 -208 3064 2885 767 260 65 24 chr1 126988738 126988984 -155204680 + MIR SINE MIR 6 261 -1 216 276 236 15 chr1 126989254 126989453 -155204211 - L2 LINE L2 -551 2763 2521 284 222 67 22 chr1 126989851 126989941 -155203723 + L2 LINE L2 3164 3257 -56 285 310 78 71 chr1 126990142 126990410 -155203254 + L2 LINE L2 2813 3082 -190 561 260 6 64 chr1 126990544 126990717 -155202947 - MIR SINE MIR 0 262 100 476 360 7 7 chr1 126990807 126990946 -155202718 - L2 LINE L2 0 3272 3134 587 238 57 62 chr1 126991612 126991805 -155201859 - MIR3 SINE MIR -6 202 11 532 310 27 32 chr1 126993754 126993941 -155199723 + MIR SINE MIR 71 256 -6 205 195 0 0 chr1 126994937 126994978 -155198686 + L2 LINE L2 2441 2481 -833 * 579 256 41 119 chr1 126994957 126995157 -155198507 + L2 LINE L2 2997 3160 -153 1354 107 5 29 chr1 126995157 126995363 -155198301 + L1PA16 LINE L1 5956 6156 -10 579 256 41 119 chr1 126995363 126995506 -155198158 + L2 LINE L2 3160 3313 0 195 42 0 0 chr1 126995509 126995533 -155198131 + (TGGA)n Simple_repeat Simple_repeat 1 24 0 727 227 177 0 chr1 126996697 126996895 -155196769 + MIR SINE MIR 19 251 -11 348 294 11 0 chr1 126998301 126998393 -155195271 + L2 LINE L2 3221 3313 0 214 217 22 0 chr1 126998822 126998868 -155194796 - MIR3 SINE MIR -7 201 155 797 175 0 0 chr1 126999014 126999140 -155194524 + FLAM_A SINE Alu 1 126 -7 318 318 37 9 chr1 127003039 127003146 -155190518 + MIR3 SINE MIR 1 110 -98 210 286 16 32 chr1 127004113 127004176 -155189488 + L3b LINE CR1 1439 1500 -83 2427 73 0 0 chr1 127004239 127004542 -155189122 + AluY SINE Alu 1 303 -8 565 290 98 16 chr1 127006868 127007051 -155186613 + MIR3 SINE MIR 2 199 -9 270 0 0 0 chr1 127008149 127008179 -155185485 + (CA)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr1 127008178 127008206 -155185458 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 659 238 54 108 chr1 127011970 127012285 -155181379 - MLT1I LTR MaLR 0 409 112 199 383 31 31 chr1 127012553 127012746 -155180918 - L2 LINE L2 -160 3112 2920 423 244 211 0 chr1 127013253 127013409 -155180255 + MIR SINE MIR 67 255 -7 442 349 30 0 chr1 127014506 127014675 -155178989 + MIR3 SINE MIR 15 188 -20 32 0 0 23 chr1 127016489 127016508 -155177156 + AT_rich Low_complexity Low_complexity 1 19 -23 2033 113 0 23 chr1 127016508 127016808 -155176856 + AluSq SINE Alu 1 293 -20 32 0 0 23 chr1 127016808 127016831 -155176833 + AT_rich Low_complexity Low_complexity 19 42 0 538 237 104 7 chr1 127017618 127017753 -155175911 - MER5A DNA MER1_type -7 182 35 1706 168 3 16 chr1 127018722 127019038 -155174626 - AluJo SINE Alu 0 312 1 1293 233 10 0 chr1 127019454 127019746 -155173918 - L1M4 LINE L1 -1299 4847 4553 206 377 14 0 chr1 127020131 127020200 -155173464 - L2 LINE L2 0 3313 3244 537 198 0 0 chr1 127020215 127020316 -155173348 - MIR SINE MIR 0 262 162 200 352 0 0 chr1 127020345 127020399 -155173265 - MIR SINE MIR -207 55 2 443 325 35 39 chr1 127021735 127022018 -155171646 - L2 LINE L2 -750 2564 2283 3107 80 52 5 chr1 127022189 127022613 -155171051 - MLT2A1 LTR ERVL 0 444 1 44283 67 13 16 chr1 127022613 127023356 -155170308 - HERVL-A1-A1 LTR ERVL 0 5654 4911 2017 109 3 16 chr1 127023356 127023668 -155169996 - AluY SINE Alu -3 308 1 44283 67 13 16 chr1 127023668 127028592 -155165072 - HERVL-A1-A1 LTR ERVL -743 4911 1 3132 70 17 68 chr1 127028592 127028677 -155164987 - MLT2A1 LTR ERVL 0 444 356 184 56 0 56 chr1 127028677 127028713 -155164951 + (TA)n Simple_repeat Simple_repeat 2 35 0 3132 70 17 68 chr1 127028713 127029095 -155164569 - MLT2A1 LTR ERVL -88 356 1 21 36 0 0 chr1 127029460 127029488 -155164176 + AT_rich Low_complexity Low_complexity 1 28 0 347 285 57 0 chr1 127031313 127031436 -155162228 - L2 LINE L2 -1035 2279 2150 289 290 61 46 chr1 127031491 127031622 -155162042 - MIR SINE MIR -49 213 81 369 281 82 0 chr1 127032096 127032231 -155161433 + MER103 DNA DNA 20 165 -1 215 163 20 0 chr1 127032397 127032446 -155161218 + (TG)n Simple_repeat Simple_repeat 2 51 0 2237 101 3 0 chr1 127033485 127033792 -155159872 + AluSg SINE Alu 2 309 -1 739 243 62 22 chr1 127035190 127035416 -155158248 - MIR SINE MIR -26 236 2 953 119 12 12 chr1 127036122 127036282 -155157382 - AluSx SINE Alu -152 160 1 285 342 13 26 chr1 127036542 127036697 -155156967 + MER5A DNA MER1_type 37 189 0 745 278 68 39 chr1 127036983 127037164 -155156500 - LTR67 LTR ERVL -6 551 356 2076 126 0 10 chr1 127037164 127037474 -155156190 + AluJb SINE Alu 1 307 -5 745 278 68 39 chr1 127037474 127037601 -155156063 - LTR67 LTR ERVL -201 356 234 713 210 69 70 chr1 127038068 127038209 -155155455 + MLT1A2 LTR MaLR 10 150 -224 1755 179 3 0 chr1 127038209 127038505 -155155159 + AluJb SINE Alu 1 297 -15 713 210 69 70 chr1 127038505 127038755 -155154909 + MLT1A2 LTR MaLR 150 358 -16 2644 214 31 9 chr1 127038755 127039297 -155154367 + MLT2B3 LTR ERVL 1 554 0 713 210 69 70 chr1 127039297 127039314 -155154350 + MLT1A2 LTR MaLR 358 374 0 1406 261 9 3 chr1 127039837 127040170 -155153494 - MER46C DNA MER2_type -2 336 2 1887 124 31 7 chr1 127040237 127040528 -155153136 + AluSq SINE Alu 3 300 -13 1085 232 63 0 chr1 127040609 127040846 -155152818 + MIR SINE MIR 10 261 -1 611 221 62 7 chr1 127041012 127041157 -155152507 - MIR SINE MIR -109 153 1 934 233 11 57 chr1 127041296 127041408 -155152256 - MIR SINE MIR 0 262 146 788 178 30 6 chr1 127041408 127041577 -155152087 + MER104 DNA MER2_type 5 177 -3 934 233 11 57 chr1 127041577 127041677 -155151987 - MIR SINE MIR -116 146 62 1880 135 7 3 chr1 127041677 127041965 -155151699 + AluSx SINE Alu 7 295 -17 934 233 11 57 chr1 127041965 127042013 -155151651 - MIR SINE MIR -200 62 13 2234 103 0 3 chr1 127042575 127042887 -155150777 + AluSx SINE Alu 1 311 -1 2051 114 3 0 chr1 127043337 127043635 -155150029 + AluSq SINE Alu 1 299 -14 1726 167 18 3 chr1 127045307 127045589 -155148075 + AluJb SINE Alu 1 286 -26 485 41 0 27 chr1 127045590 127045663 -155148001 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 219 180 80 0 chr1 127045805 127045855 -155147809 + L2 LINE L2 2488 2541 -773 4535 181 175 7 chr1 127045885 127046767 -155146897 - MER52A LTR ERV1 -5 1750 721 767 160 8 0 chr1 127046763 127046888 -155146776 - MER52A LTR ERV1 -1627 128 3 * 395 149 116 50 chr1 127046890 127047011 -155146653 + L2 LINE L2 2572 2700 -614 23 78 0 0 chr1 127047017 127047068 -155146596 + AT_rich Low_complexity Low_complexity 1 51 0 402 251 27 45 chr1 127047248 127047471 -155146193 - L1MC5 LINE L1 -280 7681 7463 231 248 19 76 chr1 127047471 127047576 -155146088 + L2 LINE L2 2694 2792 -522 901 149 153 33 chr1 127047577 127047819 -155145845 + THE1C LTR MaLR 1 271 -104 * 1758 138 165 6 chr1 127047808 127048135 -155145529 - MSTA LTR MaLR -49 379 1 2459 87 0 3 chr1 127049065 127049375 -155144289 - AluSx SINE Alu -3 309 1 350 247 71 12 chr1 127049412 127049497 -155144167 + L2 LINE L2 3196 3285 -28 1700 167 9 28 chr1 127049502 127049819 -155143845 - AluJo SINE Alu -1 311 1 200 239 113 0 chr1 127051497 127051568 -155142096 - MIR SINE MIR -11 251 173 2566 70 0 13 chr1 127051624 127051936 -155141728 - AluSx SINE Alu -4 308 1 198 0 0 0 chr1 127054571 127054593 -155139071 + (A)n Simple_repeat Simple_repeat 1 22 0 349 263 187 40 chr1 127054752 127055052 -155138612 - L2 LINE L2 -357 2957 2614 480 122 12 24 chr1 127055053 127055135 -155138529 + MER4B LTR ERV1 3 83 -527 826 143 95 37 chr1 127055161 127055350 -155138314 - PABL_B LTR ERV1 -1 666 467 201 94 0 0 chr1 127055381 127055413 -155138251 + (T)n Simple_repeat Simple_repeat 1 32 0 575 168 40 139 chr1 127055423 127055464 -155138200 - LTR9 LTR ERV1 0 612 569 2647 23 3 3 chr1 127055464 127055765 -155137899 + AluYa5 SINE Alu 1 301 -10 575 168 40 139 chr1 127055765 127055896 -155137768 - LTR9 LTR ERV1 -43 569 457 3004 90 7 85 chr1 127055910 127056326 -155137338 + MER4B LTR ERV1 100 633 -146 1948 150 3 0 chr1 127056326 127056634 -155137030 + AluJb SINE Alu 1 309 0 3004 90 7 85 chr1 127056634 127056771 -155136893 + MER4B LTR ERV1 633 779 0 190 300 135 20 chr1 127056771 127056971 -155136693 - L2 LINE L2 -696 2618 2396 1109 168 44 20 chr1 127056975 127057178 -155136486 - AluJo SINE Alu -14 298 91 194 304 0 25 chr1 127057251 127057330 -155136334 - L2 LINE L2 -926 2388 2312 422 315 61 11 chr1 127057450 127057631 -155136033 + MIR SINE MIR 47 236 -26 1127 249 15 15 chr1 127057690 127057963 -155135701 - MLT1C LTR MaLR 0 467 195 2432 84 0 3 chr1 127057963 127058261 -155135403 - AluSp SINE Alu -16 297 1 819 193 84 0 chr1 127058284 127058450 -155135214 - MLT1C LTR MaLR -243 224 45 374 319 18 18 chr1 127058648 127058811 -155134853 - MIR3 SINE MIR -6 202 40 879 169 0 0 chr1 127059221 127059357 -155134307 + AluJb SINE Alu 1 136 -176 1863 146 58 0 chr1 127059450 127059745 -155133919 - AluSx SINE Alu 0 312 1 371 220 33 0 chr1 127059848 127059939 -155133725 - MLT1L LTR MaLR -2 613 520 1958 181 28 33 chr1 127059990 127060429 -155133235 + MER74A LTR ERVL 1 394 -164 1792 137 4 0 chr1 127060429 127060691 -155132973 + HERVH LTR ERV1 3472 3734 -3979 * 8019 122 11 5 chr1 127060687 127061864 -155131800 + HERVH LTR ERV1 3995 5149 -2564 2436 152 9 9 chr1 127061855 127062282 -155131382 + HERVH LTR ERV1 5590 6016 -1697 * 2427 118 10 31 chr1 127062275 127062658 -155131006 + HERVH LTR ERV1 7157 7531 -182 * 4740 70 2 10 chr1 127062758 127063345 -155130319 - LTR5 LTR ERVK -387 582 1 274 323 81 8 chr1 127063707 127063831 -155129833 + L2 LINE L2 3165 3297 -16 654 280 92 3 chr1 127063933 127064240 -155129424 - MLT1J2 LTR MaLR 0 450 101 267 262 65 28 chr1 127064755 127064862 -155128802 - MIR SINE MIR -59 149 39 227 246 15 15 chr1 127065131 127065196 -155128468 - MIR SINE MIR -68 140 76 840 220 12 0 chr1 127066467 127066640 -155127024 + MIR SINE MIR 34 208 -54 183 304 18 0 chr1 127066687 127066743 -155126921 + MIR SINE MIR 205 261 -1 369 170 52 33 chr1 127066930 127067399 -155126265 + (CA)n Simple_repeat Simple_repeat 1 478 0 311 195 253 11 chr1 127068003 127068090 -155125574 + FLAM_A SINE Alu 26 133 0 258 226 16 32 chr1 127068300 127068362 -155125302 + MLT1K LTR MaLR 202 262 -326 1506 76 5 0 chr1 127068648 127068846 -155124818 + L1PB1 LINE L1 5946 6144 -7 25 0 0 0 chr1 127069077 127069102 -155124562 + AT_rich Low_complexity Low_complexity 1 25 0 1423 194 216 64 chr1 127070156 127070326 -155123338 + L1MC4a LINE L1 6676 6819 -989 2068 146 0 19 chr1 127070326 127070642 -155123022 + AluSx SINE Alu 3 312 0 1423 194 216 64 chr1 127070642 127070681 -155122983 + L1MC4a LINE L1 6819 6851 -957 1574 223 21 29 chr1 127070681 127071058 -155122606 - MLT1A2 LTR MaLR 0 374 1 1423 194 216 64 chr1 127071058 127071745 -155121919 + L1MC4a LINE L1 6851 7664 -144 185 346 43 43 chr1 127071785 127072109 -155121555 + L2 LINE L2 1343 1666 -1648 277 248 220 8 chr1 127072350 127072600 -155121064 + L2 LINE L2 1700 2002 -1312 2008 214 47 92 chr1 127072601 127073180 -155120484 + MLT1E LTR MaLR 41 593 0 1463 254 42 21 chr1 127073382 127073863 -155119801 - L2 LINE L2 -658 2656 2166 358 274 25 57 chr1 127074320 127074477 -155119187 + MIR SINE MIR 69 220 -42 193 279 73 0 chr1 127074496 127074564 -155119100 + L2 LINE L2 3158 3230 -42 478 257 38 0 chr1 127076109 127076214 -155117450 - L2 LINE L2 -3 3310 3202 434 209 8 0 chr1 127076220 127076349 -155117315 + (TGGA)n Simple_repeat Simple_repeat 1 130 0 1389 235 109 11 chr1 127076447 127076903 -155116761 - MLT1F LTR MaLR 0 542 51 1132 145 11 6 chr1 127076903 127077082 -155116582 + LTR26E LTR ERV1 1 180 -442 379 253 6 80 chr1 127077266 127077428 -155116236 + L2 LINE L2 2908 3057 -215 2688 129 34 50 chr1 127077511 127078245 -155115419 - MER4E LTR ERV1 0 779 1 262 257 14 0 chr1 127078276 127078346 -155115318 + L2 LINE L2 3239 3309 -4 1076 121 10 71 chr1 127078346 127078544 -155115120 + LTR23 LTR ERV1 1 186 -251 1091 131 46 89 chr1 127078608 127078867 -155114797 + LTR23 LTR ERV1 185 432 -5 4713 137 19 3 chr1 127078872 127079143 -155114521 + MER50 LTR ERV1 1 266 -468 3561 55 0 7 chr1 127079143 127079594 -155114070 - LTR7 LTR ERV1 -2 448 1 4713 137 19 3 chr1 127079594 127080021 -155113643 + MER50 LTR ERV1 266 710 -24 581 268 13 61 chr1 127080646 127080760 -155112904 + MIR SINE MIR 3 102 -160 1579 119 18 0 chr1 127080760 127080986 -155112678 - MER30 DNA MER1_type 0 230 1 581 268 13 61 chr1 127080986 127081099 -155112565 + MIR SINE MIR 102 219 -43 2750 189 25 48 chr1 127082071 127082638 -155111026 - MER41C LTR ERV1 0 554 1 2579 102 127 5 chr1 127084184 127084585 -155109079 - LTR7 LTR ERV1 0 450 1 2872 140 18 74 chr1 127084718 127085275 -155108389 - LTR9 LTR ERV1 -86 526 1 442 285 41 8 chr1 127085276 127085399 -155108265 + L2 LINE L2 3186 3312 -1 865 261 72 76 chr1 127086044 127086596 -155107068 - PABL_A LTR ERV1 -2 658 109 251 220 0 0 chr1 127086709 127086759 -155106905 - PABL_B LTR ERV1 -617 50 1 1922 117 0 8 chr1 127086760 127087016 -155106648 + AluSx SINE Alu 29 282 -30 2553 96 8 3 chr1 127087067 127087420 -155106244 - THE1A LTR MaLR 0 355 1 11729 98 6 3 chr1 127087420 127088995 -155104669 - THE1A-int LTR MaLR 0 1580 1 2336 111 17 9 chr1 127088995 127089345 -155104319 - THE1A LTR MaLR 0 355 3 1915 161 0 13 chr1 127089860 127090158 -155103506 + AluJo SINE Alu 1 294 -18 198 0 0 0 chr1 127090850 127090872 -155102792 + (TAA)n Simple_repeat Simple_repeat 1 22 0 1627 160 0 45 chr1 127091409 127091722 -155101942 - AluJb SINE Alu -13 299 1 2453 113 85 10 chr1 127092058 127092456 -155101208 + MSTA LTR MaLR 1 428 0 573 252 38 13 chr1 127092458 127092617 -155101047 - MIR SINE MIR -60 202 40 240 212 0 0 chr1 127092867 127092933 -155100731 + CT-rich Low_complexity Low_complexity 3 68 0 465 261 91 11 chr1 127093347 127093523 -155100141 + MIR SINE MIR 9 198 -64 365 263 8 53 chr1 127094247 127094380 -155099284 + MIR SINE MIR 63 189 -73 2393 58 41 0 chr1 127094396 127094688 -155098976 + AluY SINE Alu 1 304 -7 483 104 0 0 chr1 127094617 127094694 -155098970 + Alu SINE Alu 235 311 -1 291 54 0 0 chr1 127094978 127095015 -155098649 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 2031 147 3 0 chr1 127095208 127095507 -155098157 + AluJo SINE Alu 3 302 -10 248 300 104 58 chr1 127095638 127096271 -155097393 - L2 LINE L2 -164 3108 2444 671 209 0 0 chr1 127096602 127096717 -155096947 + FLAM_C SINE Alu 7 121 -22 345 140 0 0 chr1 127096717 127096774 -155096890 + (TA)n Simple_repeat Simple_repeat 1 57 0 734 171 101 0 chr1 127096786 127096915 -155096749 + FRAM SINE Alu 1 137 -39 6395 127 80 10 chr1 127097838 127098938 -155094726 - Tigger3b DNA MER2_type -54 1177 1 351 79 0 59 chr1 127099001 127099083 -155094581 + MLT1F LTR MaLR 462 618 -8 320 204 68 11 chr1 127099083 127099171 -155094493 + HAL1 LINE L1 2268 2360 -147 1748 213 3 26 chr1 127099183 127099531 -155094133 - MLT1F LTR MaLR -193 349 10 643 287 92 0 chr1 127100600 127100851 -155092813 + Charlie8 DNA MER1_type 1 274 -2143 1816 141 67 30 chr1 127101233 127101594 -155092070 + THE1C LTR MaLR 1 374 -1 627 271 27 27 chr1 127101663 127101884 -155091780 + MIR SINE MIR 41 261 -1 1533 177 18 73 chr1 127102056 127102383 -155091281 - AluJo SINE Alu -3 309 1 740 239 182 12 chr1 127102621 127103049 -155090615 - L2 LINE L2 0 3313 2749 249 221 0 116 chr1 127103065 127103160 -155090504 + L2 LINE L2 2597 2680 -634 2788 123 39 12 chr1 127103386 127103801 -155089863 + MSTB LTR MaLR 1 426 0 195 258 0 61 chr1 127103950 127104016 -155089648 + L2 LINE L2 3209 3270 -2 1810 86 0 0 chr1 127106339 127106560 -155087104 - AluSg/x SINE Alu 0 312 92 183 139 0 0 chr1 127107040 127107076 -155086588 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 667 82 124 0 chr1 127107270 127107367 -155086297 + AluJb SINE Alu 190 298 -14 224 236 0 69 chr1 127107643 127107715 -155085949 + MIR3 SINE MIR 128 194 -14 4621 162 65 62 chr1 127109665 127110484 -155083180 + L1MB4 LINE L1 4524 5339 -841 1767 177 0 3 chr1 127110484 127110790 -155082874 + AluJb SINE Alu 1 305 0 4621 162 65 62 chr1 127110790 127110874 -155082790 + L1MB4 LINE L1 5339 5421 -759 2061 98 80 0 chr1 127110874 127111160 -155082504 + AluSc SINE Alu 1 309 0 1985 148 26 0 chr1 127111169 127111474 -155082190 + AluSq SINE Alu 1 313 0 4621 162 65 62 chr1 127111474 127111509 -155082155 + L1MB4 LINE L1 5428 5461 -719 1539 167 3 78 chr1 127111509 127111844 -155081820 + AluJo SINE Alu 1 310 -2 4621 162 65 62 chr1 127111844 127112554 -155081110 + L1MB4 LINE L1 5461 6174 -6 22 0 0 0 chr1 127112931 127112953 -155080711 + AT_rich Low_complexity Low_complexity 1 22 0 1810 140 31 14 chr1 127113283 127113576 -155080088 + AluSq SINE Alu 1 298 -15 2291 63 0 14 chr1 127113578 127113896 -155079768 + AluY SINE Alu 1 314 0 235 307 79 0 chr1 127115390 127115517 -155078147 + L3 LINE CR1 968 1104 -473 922 120 0 47 chr1 127115536 127115686 -155077978 + FLAM_C SINE Alu 1 143 0 420 297 75 28 chr1 127116028 127116240 -155077424 + L2 LINE L2 2236 2457 -857 1077 107 33 148 chr1 127116242 127116485 -155077179 + AluJb SINE Alu 85 299 -13 470 183 87 0 chr1 127116494 127116598 -155077066 + MIR SINE MIR 120 232 -30 396 0 0 0 chr1 127116677 127116721 -155076943 + (TG)n Simple_repeat Simple_repeat 2 45 0 2063 130 3 7 chr1 127116724 127117024 -155076640 - AluSx SINE Alu -13 299 1 645 169 81 8 chr1 127117246 127117370 -155076294 + FLAM_C SINE Alu 1 133 0 1701 192 0 17 chr1 127117381 127117678 -155075986 + AluJb SINE Alu 1 292 -20 189 316 114 9 chr1 127117967 127118081 -155075583 + L2 LINE L2 3143 3268 -4 2046 109 0 0 chr1 127118922 127119179 -155074485 + AluSg SINE Alu 35 291 -19 5299 101 20 12 chr1 127119831 127120632 -155073032 + L1PA15 LINE L1 5359 6165 0 1449 158 3 130 chr1 127120639 127120986 -155072678 - AluJo SINE Alu -8 304 2 1614 132 23 23 chr1 127121795 127122052 -155071612 - AluJb SINE Alu -44 268 12 218 296 125 62 chr1 127122904 127122971 -155070693 - MIR3 SINE MIR -21 187 126 1756 153 29 32 chr1 127122971 127123279 -155070385 + AluSx SINE Alu 1 307 -5 218 296 125 62 chr1 127123279 127123387 -155070277 - MIR3 SINE MIR -82 126 1 24 0 0 0 chr1 127125627 127125651 -155068013 + GC_rich Low_complexity Low_complexity 1 24 0 39 50 0 0 chr1 127125805 127125865 -155067799 + GC_rich Low_complexity Low_complexity 1 60 0 180 0 0 0 chr1 127125919 127125939 -155067725 + (CCG)n Simple_repeat Simple_repeat 2 21 0 408 311 27 55 chr1 127127717 127127900 -155065764 - L2 LINE L2 0 3272 3095 248 277 0 115 chr1 127127953 127128020 -155065644 - L2 LINE L2 0 3313 3271 2222 129 7 0 chr1 127128020 127128330 -155065334 + AluSx SINE Alu 1 312 0 248 277 0 115 chr1 127128330 127128410 -155065254 - L2 LINE L2 -42 3271 3183 2159 113 3 3 chr1 127128493 127128784 -155064880 + AluSx SINE Alu 1 291 -21 1136 189 117 102 chr1 127129362 127129504 -155064160 - L1MC4 LINE L1 0 8042 7904 2298 122 0 3 chr1 127129504 127129815 -155063849 - AluSx SINE Alu -2 310 1 1136 189 117 102 chr1 127129815 127130160 -155063504 - L1MC4 LINE L1 -138 7904 7548 2264 91 0 24 chr1 127130196 127130492 -155063172 + AluSg1 SINE Alu 1 289 -20 699 156 0 9 chr1 127130781 127130890 -155062774 + FLAM_A SINE Alu 10 117 -25 674 71 0 10 chr1 127130890 127130988 -155062676 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 339 25 0 0 chr1 127131024 127131064 -155062600 + (GA)n Simple_repeat Simple_repeat 1 40 0 425 211 64 0 chr1 127131546 127131655 -155062009 + L1MB5 LINE L1 6059 6174 0 1170 127 6 6 chr1 127131730 127131896 -155061768 + FRAM SINE Alu 1 161 -15 181 266 62 16 chr1 127132503 127132567 -155061097 + L2 LINE L2 3202 3268 -4 1533 184 51 24 chr1 127132643 127132936 -155060728 + AluJo SINE Alu 1 301 -11 192 216 0 0 chr1 127132936 127132987 -155060677 + GA-rich Low_complexity Low_complexity 3 53 0 646 151 0 71 chr1 127132997 127133123 -155060541 + FLAM_C SINE Alu 15 131 -12 21 0 0 0 chr1 127133155 127133176 -155060488 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 164 16 chr1 127133337 127133465 -155060199 + MIR SINE MIR 8 154 -108 380 72 12 18 chr1 127133520 127133586 -155060078 + Alu SINE Alu 1 52 -251 1023 88 0 0 chr1 127133588 127133713 -155059951 - AluSg/x SINE Alu -19 291 167 260 299 23 0 chr1 127134796 127134883 -155058781 - L2 LINE L2 0 3313 3225 216 0 0 0 chr1 127134891 127134915 -155058749 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 657 159 0 26 chr1 127135571 127135707 -155057957 - FLAM_A SINE Alu 0 142 25 23 0 0 0 chr1 127135707 127135730 -155057934 + AT_rich Low_complexity Low_complexity 1 23 0 2284 100 0 7 chr1 127137735 127138036 -155055628 - AluSx SINE Alu -13 299 1 513 182 52 58 chr1 127138639 127138793 -155054871 - L1MA10 LINE L1 0 6334 6182 180 316 10 71 chr1 127138983 127139081 -155054583 - L2 LINE L2 -618 2696 2605 450 320 34 24 chr1 127139446 127139652 -155054012 - MIR SINE MIR -21 241 34 2321 92 7 3 chr1 127140151 127140456 -155053208 - AluSq SINE Alu -5 308 3 1189 207 14 5 chr1 127140992 127141209 -155052455 - MER58A DNA MER1_type -1 223 5 376 286 47 17 chr1 127141224 127141377 -155052287 + MER5A DNA MER1_type 4 171 -18 2452 65 0 0 chr1 127141652 127141945 -155051719 + AluY SINE Alu 1 293 -18 226 187 114 106 chr1 127143538 127143661 -155050003 - MER113 DNA MER1_type? -396 125 2 2356 88 0 0 chr1 127143669 127143963 -155049701 + AluSx SINE Alu 1 294 -18 1644 196 7 3 chr1 127143963 127144249 -155049415 + AluJo SINE Alu 1 287 -25 32 43 0 0 chr1 127144255 127144301 -155049363 + AT_rich Low_complexity Low_complexity 1 46 0 2829 218 104 12 chr1 127144456 127144507 -155049157 + L1MC4 LINE L1 6711 6756 -1286 2224 102 0 3 chr1 127144507 127144801 -155048863 + AluSg SINE Alu 1 293 -17 2064 110 3 37 chr1 127144806 127145105 -155048559 + AluSx SINE Alu 9 297 -15 2829 218 104 12 chr1 127145105 127145990 -155047674 + L1MC4 LINE L1 6759 7910 -132 240 281 0 0 chr1 127145977 127146034 -155047630 + L1MD3 LINE L1 7922 7978 -17 * 1059 146 13 0 chr1 127146067 127146246 -155047418 - AluSx SINE Alu 0 314 134 2211 123 0 13 chr1 127146246 127146562 -155047102 - AluSx SINE Alu 0 312 1 1747 128 0 0 chr1 127146736 127146979 -155046685 - AluSx SINE Alu -20 292 50 653 36 0 12 chr1 127146979 127147062 -155046602 - AluSx SINE Alu -177 135 54 1171 94 0 19 chr1 127147068 127147227 -155046437 + AluSc SINE Alu 135 290 -19 1907 155 0 26 chr1 127147232 127147542 -155046122 + AluJb SINE Alu 1 302 -10 2105 120 14 0 chr1 127148213 127148504 -155045160 - AluSx SINE Alu -17 295 1 203 390 15 22 chr1 127149124 127149260 -155044404 - L2 LINE L2 -4 3268 3134 256 397 9 0 chr1 127149376 127149492 -155044172 - L2 LINE L2 -222 3050 2934 212 314 59 0 chr1 127149527 127149629 -155044035 + MIR SINE MIR 138 245 -17 2250 88 3 27 chr1 127149915 127150212 -155043452 + AluSg SINE Alu 1 290 -20 721 147 0 9 chr1 127150501 127150610 -155043054 + FLAM_A SINE Alu 10 117 -25 566 81 0 12 chr1 127150610 127150696 -155042968 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 321 26 0 0 chr1 127150732 127150770 -155042894 + (GA)n Simple_repeat Simple_repeat 1 38 0 425 211 64 0 chr1 127151251 127151360 -155042304 + L1MB5 LINE L1 6059 6174 0 1170 127 6 6 chr1 127151435 127151601 -155042063 + FRAM SINE Alu 1 161 -15 181 266 62 16 chr1 127152207 127152271 -155041393 + L2 LINE L2 3202 3268 -4 1542 184 51 24 chr1 127152347 127152641 -155041023 + AluJo SINE Alu 1 302 -10 192 216 0 0 chr1 127152641 127152692 -155040972 + GA-rich Low_complexity Low_complexity 3 53 0 646 151 0 71 chr1 127152702 127152828 -155040836 + FLAM_C SINE Alu 15 131 -12 21 0 0 0 chr1 127152860 127152881 -155040783 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 164 16 chr1 127153042 127153170 -155040494 + MIR SINE MIR 8 154 -108 380 72 12 18 chr1 127153225 127153291 -155040373 + Alu SINE Alu 1 52 -248 1827 134 3 27 chr1 127153293 127153591 -155040073 - AluSg SINE Alu -19 291 1 23 33 0 0 chr1 127153592 127153622 -155040042 + AT_rich Low_complexity Low_complexity 1 30 0 2362 92 7 0 chr1 127153628 127153934 -155039730 + AluSp SINE Alu 1 308 -5 2046 123 0 14 chr1 127153952 127154275 -155039389 + AluSx SINE Alu 5 323 0 853 107 15 23 chr1 127154665 127154796 -155038868 + FLAM_C SINE Alu 1 130 -3 306 300 131 30 chr1 127154821 127155088 -155038576 + L2 LINE L2 2578 2871 -443 2216 111 16 3 chr1 127155107 127155413 -155038251 - AluSx SINE Alu -2 310 1 369 0 0 0 chr1 127155414 127155455 -155038209 + (TG)n Simple_repeat Simple_repeat 1 41 0 4048 102 66 78 chr1 127155468 127156145 -155037519 - L1PA16 LINE L1 -9 6157 5488 2215 102 0 16 chr1 127156145 127156450 -155037214 - AluSg SINE Alu -10 300 1 4048 102 66 78 chr1 127156450 127156526 -155037138 - L1PA16 LINE L1 -678 5488 5413 247 114 0 0 chr1 127156618 127156653 -155037011 + Alu SINE Alu 90 124 -178 731 279 212 13 chr1 127156766 127157290 -155036374 - L2 LINE L2 -2457 857 230 2142 120 7 0 chr1 127158166 127158458 -155035206 - AluSx SINE Alu -18 294 1 198 103 0 0 chr1 127158470 127158499 -155035165 + (T)n Simple_repeat Simple_repeat 1 29 0 573 304 40 22 chr1 127158500 127158727 -155034937 - MIR SINE MIR -31 231 1 2236 97 27 0 chr1 127159725 127160024 -155033640 + AluSx SINE Alu 1 307 -5 1795 151 0 46 chr1 127160471 127160776 -155032888 + AluJb SINE Alu 1 291 -21 633 258 154 8 chr1 127161190 127161559 -155032105 + L1ME4a LINE L1 5558 5980 -141 279 239 232 13 chr1 127161693 127161848 -155031816 - MIR SINE MIR -32 230 42 471 187 0 0 chr1 127162847 127162938 -155030726 + MER103 DNA DNA 3 93 -73 1764 159 20 7 chr1 127164579 127164874 -155028790 + AluJb SINE Alu 1 299 -13 236 352 42 21 chr1 127165018 127165160 -155028504 - L2 LINE L2 -449 2865 2721 321 299 67 30 chr1 127165545 127165679 -155027985 + L2 LINE L2 3133 3271 -1 438 240 149 34 chr1 127165810 127165985 -155027679 - MARNA DNA Mariner -98 488 294 464 230 109 52 chr1 127166171 127166345 -155027319 - L2 LINE L2 -1 3312 3129 209 296 0 37 chr1 127166448 127166529 -155027135 + L2 LINE L2 2854 2931 -341 201 256 0 0 chr1 127166544 127166587 -155027077 + (TG)n Simple_repeat Simple_repeat 1 43 0 1811 179 0 10 chr1 127166758 127167049 -155026615 - AluJb SINE Alu -24 288 1 203 250 118 0 chr1 127167053 127167121 -155026543 - L2 LINE L2 -239 3074 2999 2397 87 0 13 chr1 127167600 127167909 -155025755 + AluSq SINE Alu 1 305 -8 750 158 0 43 chr1 127168017 127168156 -155025508 + FLAM_A SINE Alu 1 133 0 2640 24 0 10 chr1 127168581 127168878 -155024786 + AluY SINE Alu 1 294 -17 2557 64 0 3 chr1 127169016 127169327 -155024337 + AluSx SINE Alu 1 310 -2 310 294 108 48 chr1 127170923 127171154 -155022510 + L2 LINE L2 2149 2393 -921 259 263 119 44 chr1 127171415 127171575 -155022089 + MER5B DNA MER1_type 4 175 -3 193 273 182 40 chr1 127171709 127171808 -155021856 + L2 LINE L2 2981 3093 -179 2336 91 0 0 chr1 127172008 127172295 -155021369 + AluSx SINE Alu 1 287 -25 1607 171 73 0 chr1 127173043 127173330 -155020334 + AluJo SINE Alu 1 308 -4 2388 74 3 0 chr1 127174263 127174548 -155019116 - AluSp SINE Alu -27 286 1 307 246 82 18 chr1 127175817 127175927 -155017737 - MIR SINE MIR -62 146 30 202 255 0 0 chr1 127175931 127175982 -155017682 - L2 LINE L2 -5 3267 3217 211 184 20 0 chr1 127176696 127176745 -155016919 + L2 LINE L2 3264 3313 0 698 229 144 0 chr1 127176959 127177112 -155016552 - MER96 DNA MER1_type? 0 175 1 198 103 0 0 chr1 127177761 127177790 -155015874 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1712 147 11 19 chr1 127177798 127178064 -155015600 - AluSx SINE Alu -48 264 1 250 277 44 88 chr1 127178122 127178216 -155015448 + MER5B DNA MER1_type 26 112 -66 2395 95 3 0 chr1 127178216 127178520 -155015144 - AluSx SINE Alu -7 305 1 250 277 44 88 chr1 127178520 127178584 -155015080 + MER5B DNA MER1_type 112 177 -1 221 350 19 49 chr1 127180762 127181028 -155012636 + L2 LINE L2 2825 3082 -190 1715 153 41 7 chr1 127181530 127181824 -155011840 + AluJo SINE Alu 1 304 -8 1736 174 7 4 chr1 127181827 127182131 -155011533 + AluJo SINE Alu 1 305 0 1637 134 20 12 chr1 127182290 127182544 -155011120 - AluSx SINE Alu -8 304 49 2309 105 3 3 chr1 127182648 127182954 -155010710 - AluSq SINE Alu -7 306 1 257 180 20 0 chr1 127182995 127183045 -155010619 + L2 LINE L2 3219 3269 -3 1174 147 31 54 chr1 127183147 127183371 -155010293 - MER20 DNA MER1_type 0 219 1 2308 99 3 3 chr1 127183528 127183831 -155009833 + AluSg SINE Alu 1 303 -7 253 281 151 27 chr1 127184540 127184686 -155008978 + MLT1-int LTR MaLR 1142 1305 -66 1143 133 18 0 chr1 127184970 127185135 -155008529 - AluJb SINE Alu -7 305 138 263 209 60 0 chr1 127185228 127185295 -155008369 + MIR SINE MIR 37 107 -155 26 0 0 0 chr1 127185313 127185339 -155008325 + AT_rich Low_complexity Low_complexity 1 26 0 983 141 47 31 chr1 127185602 127185793 -155007871 - L1MC1 LINE L1 0 6333 6140 1107 156 0 0 chr1 127185834 127186007 -155007657 - AluSg/x SINE Alu -21 289 117 2608 92 22 0 chr1 127186009 127186367 -155007297 - L1MC1 LINE L1 -524 5809 5444 2222 108 3 7 chr1 127186470 127186776 -155006888 - AluSx SINE Alu -7 305 1 212 314 59 0 chr1 127187062 127187164 -155006500 - MIR SINE MIR -17 245 138 256 397 9 0 chr1 127187199 127187315 -155006349 + L2 LINE L2 2934 3050 -222 203 390 15 22 chr1 127187431 127187567 -155006097 + L2 LINE L2 3134 3268 -4 2105 120 14 0 chr1 127188187 127188478 -155005186 + AluSx SINE Alu 1 295 -17 1898 155 0 26 chr1 127189149 127189458 -155004206 - AluJb SINE Alu -11 301 1 1123 101 0 19 chr1 127189463 127189622 -155004042 - AluSc SINE Alu -19 290 135 25 0 0 0 chr1 127190330 127190355 -155003309 + AT_rich Low_complexity Low_complexity 1 25 0 277 235 0 0 chr1 127190867 127190935 -155002729 + T-rich Low_complexity Low_complexity 2 69 0 195 42 0 0 chr1 127192340 127192364 -155001300 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 7567 82 20 0 chr1 127193909 127194956 -154998708 - L1MA1 LINE L1 -1 6301 5233 1994 109 4 0 chr1 127196052 127196327 -154997337 + AluSx SINE Alu 5 280 -32 901 183 6 0 chr1 127196725 127196889 -154996775 + AluJb SINE Alu 136 300 -12 313 247 59 0 chr1 127197688 127197773 -154995891 - MLT1J2 LTR MaLR 0 450 361 289 149 0 0 chr1 127197896 127197943 -154995721 - MLT1J LTR MaLR -364 147 101 26 0 0 0 chr1 127198559 127198585 -154995079 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr1 127201171 127201193 -154992471 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr1 127201551 127201595 -154992069 + AT_rich Low_complexity Low_complexity 1 44 0 6441 233 34 74 chr1 127203281 127203931 -154989733 + L1M2 LINE L1 1406 2081 -4767 1941 151 3 3 chr1 127203931 127204243 -154989421 + AluSx SINE Alu 1 312 0 6441 233 34 74 chr1 127204243 127204873 -154988791 + L1M2 LINE L1 2081 2735 -4113 1785 132 3 98 chr1 127204873 127205199 -154988465 + AluJo SINE Alu 1 295 -7 6441 233 34 74 chr1 127205199 127206303 -154987361 + L1M2 LINE L1 2735 3882 -2966 2107 125 3 0 chr1 127206303 127206606 -154987058 + AluSx SINE Alu 1 304 -8 6441 233 34 74 chr1 127206606 127206682 -154986982 + L1M2 LINE L1 3882 3960 -2888 707 141 7 74 chr1 127206682 127206817 -154986847 + AluJb SINE Alu 1 126 -186 6441 233 34 74 chr1 127206817 127207307 -154986357 + L1M2 LINE L1 3960 4400 -2448 403 285 73 34 chr1 127207841 127208020 -154985644 + L3 LINE CR1 902 1087 -490 531 249 59 18 chr1 127208037 127208206 -154985458 - MIR SINE MIR 0 262 87 919 314 47 18 chr1 127208237 127208578 -154985086 + L3 LINE CR1 1218 1568 -9 942 192 29 0 chr1 127209682 127209854 -154983810 + MER45A DNA AcHobo 2 178 0 189 0 0 0 chr1 127216689 127216710 -154976954 + (TG)n Simple_repeat Simple_repeat 2 22 0 203 326 11 0 chr1 127216759 127216851 -154976813 + (TG)n Simple_repeat Simple_repeat 1 93 0 3780 100 2 4 chr1 127218574 127219086 -154974578 - MER9 LTR ERVK 0 511 1 1562 82 55 9 chr1 127219571 127219791 -154973873 + MER30 DNA MER1_type 1 230 0 408 196 335 32 chr1 127220027 127220185 -154973479 + MIR SINE MIR 20 225 -37 242 247 208 0 chr1 127220329 127220406 -154973258 + L2 LINE L2 3179 3271 -1 2230 122 58 0 chr1 127220551 127220895 -154972769 - THE1B LTR MaLR 0 364 1 943 239 33 16 chr1 127221094 127221337 -154972327 + MIR SINE MIR 16 262 0 2096 92 0 24 chr1 127221338 127221630 -154972034 - AluY SINE Alu -26 285 1 212 189 0 0 chr1 127221632 127221669 -154971995 + (TTA)n Simple_repeat Simple_repeat 2 38 0 353 311 163 22 chr1 127221691 127221826 -154971838 - MIR SINE MIR -50 212 59 331 278 43 9 chr1 127221839 127221933 -154971731 + MIR SINE MIR 11 99 -109 2165 119 140 8 chr1 127221975 127222353 -154971311 - MSTA LTR MaLR 0 428 1 683 164 132 53 chr1 127222438 127222590 -154971074 - AluJ SINE Alu -18 294 131 207 0 0 0 chr1 127222874 127222897 -154970767 + (TG)n Simple_repeat Simple_repeat 2 24 0 318 26 0 0 chr1 127222897 127222936 -154970728 + (GA)n Simple_repeat Simple_repeat 2 40 0 383 259 12 0 chr1 127223316 127223401 -154970263 + MIR SINE MIR 59 144 -118 267 272 11 65 chr1 127223455 127223547 -154970117 - MIR3 SINE MIR -12 196 110 332 289 62 10 chr1 127223552 127223649 -154970015 + L2 LINE L2 3208 3309 -4 211 237 34 34 chr1 127224016 127224075 -154969589 - MIR3 SINE MIR -6 202 144 389 247 11 11 chr1 127224771 127224864 -154968800 + MIR SINE MIR 114 206 -56 750 135 48 0 chr1 127225106 127225232 -154968432 - AluJ SINE Alu -170 132 1 356 333 116 26 chr1 127225416 127225719 -154967945 - L1MC/D LINE L1 -2044 5764 5435 5733 223 21 13 chr1 127225784 127226945 -154966719 + L1M2c LINE L1 2 1171 -5618 2486 276 72 25 chr1 127228707 127229593 -154964071 + L2 LINE L2 1838 2765 -549 1101 29 35 18 chr1 127229648 127229818 -154963846 + (TTTC)n Simple_repeat Simple_repeat 3 175 0 1358 176 3 54 chr1 127229818 127230113 -154963551 - AluJb SINE Alu -32 280 1 1138 256 94 45 chr1 127230113 127230516 -154963148 + L2 LINE L2 2889 3311 -2 215 326 0 0 chr1 127230793 127230839 -154962825 + L2 LINE L2 3144 3189 -83 297 302 155 0 chr1 127231275 127231391 -154962273 + L2 LINE L2 3138 3271 -1 191 279 0 0 chr1 127231839 127231882 -154961782 + L2 LINE L2 3262 3304 -9 380 281 176 21 chr1 127232120 127232314 -154961350 + MIR SINE MIR 33 253 -9 290 279 0 0 chr1 127232680 127232759 -154960905 - MIR SINE MIR -76 132 54 382 340 53 19 chr1 127232902 127233111 -154960553 - MIR SINE MIR -27 235 20 228 214 0 0 chr1 127233233 127233289 -154960375 + (CA)n Simple_repeat Simple_repeat 2 57 0 1232 246 66 33 chr1 127236907 127237301 -154956363 + MLT1I LTR MaLR 1 407 -2 423 237 21 0 chr1 127238345 127238438 -154955226 + MIR SINE MIR 168 262 0 180 278 0 0 chr1 127238596 127238632 -154955032 - MIR SINE MIR -7 255 220 * 810 208 140 9 chr1 127238631 127238852 -154954812 + MIR SINE MIR 8 257 -5 340 266 87 37 chr1 127238843 127239033 -154954631 - MIR SINE MIR -30 232 29 * 227 318 24 0 chr1 127239372 127239457 -154954207 + L2 LINE L2 2899 2985 -328 200 225 313 0 chr1 127240682 127240762 -154952902 + L2 LINE L2 3194 3298 -15 14598 121 40 15 chr1 127240809 127243050 -154950614 + Tigger1 DNA MER2_type 1 2296 -122 777 83 0 9 chr1 127243097 127243206 -154950458 + Tigger1 DNA MER2_type 1470 1577 -841 255 152 0 0 chr1 127243243 127243289 -154950375 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr1 127243313 127243345 -154950319 + AT_rich Low_complexity Low_complexity 1 32 0 222 204 23 23 chr1 127243427 127243559 -154950105 + (TA)n Simple_repeat Simple_repeat 1 132 0 313 269 87 29 chr1 127243566 127243670 -154949994 - L1MC4 LINE L1 -1321 6721 6612 222 37 0 0 chr1 127243681 127243708 -154949956 + (TG)n Simple_repeat Simple_repeat 2 28 0 776 132 0 0 chr1 127243709 127243823 -154949841 + Tigger1 DNA MER2_type 2300 2413 -5 261 300 92 8 chr1 127244499 127244619 -154949045 - MIR3 SINE MIR -68 140 11 268 220 0 0 chr1 127244779 127244829 -154948835 - L2 LINE L2 -10 3262 3213 24 67 0 0 chr1 127245282 127245327 -154948337 + AT_rich Low_complexity Low_complexity 1 45 0 973 191 78 0 chr1 127245367 127245571 -154948093 - MIR SINE MIR -13 249 30 673 279 57 9 chr1 127246873 127247102 -154946562 + MIR SINE MIR 23 262 0 450 329 53 0 chr1 127247819 127247989 -154945675 + MIR SINE MIR 73 251 -11 207 0 0 0 chr1 127248797 127248820 -154944844 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 446 243 90 37 chr1 127248836 127249025 -154944639 - MIR SINE MIR -49 213 15 198 0 0 0 chr1 127249311 127249333 -154944331 + (GA)n Simple_repeat Simple_repeat 1 22 0 378 61 0 0 chr1 127249334 127249383 -154944281 + (TG)n Simple_repeat Simple_repeat 2 50 0 236 295 124 9 chr1 127253581 127253686 -154939978 + MIR SINE MIR 50 166 -96 326 160 20 40 chr1 127255628 127255778 -154937886 + (CAGAGA)n Simple_repeat Simple_repeat 2 148 0 282 258 108 0 chr1 127256296 127256389 -154937275 + MIR3 SINE MIR 100 202 -6 24 67 0 0 chr1 127256774 127256819 -154936845 + AT_rich Low_complexity Low_complexity 1 45 0 574 276 66 26 chr1 127257927 127258155 -154935509 + MIR SINE MIR 20 256 -6 186 260 130 82 chr1 127258271 127258417 -154935247 - MIR SINE MIR -66 196 44 431 238 119 14 chr1 127259298 127259441 -154934223 - MIR SINE MIR -54 208 51 232 200 92 0 chr1 127259460 127259525 -154934139 - L2 LINE L2 -1 3312 3242 292 288 0 4 chr1 127259900 127260069 -154933595 - MIR SINE MIR 0 262 28 229 382 68 17 chr1 127260072 127260365 -154933299 + L2 LINE L2 2224 2531 -783 6540 200 24 2 chr1 127260902 127263019 -154930645 + L1PA15 LINE L1 4027 6165 0 736 200 5 100 chr1 127263025 127263235 -154930429 + MIR SINE MIR 29 218 -44 898 216 6 0 chr1 127264417 127264588 -154929076 + FRAM SINE Alu 1 172 -4 200 204 20 0 chr1 127264859 127264908 -154928756 + (CA)n Simple_repeat Simple_repeat 2 51 0 279 317 71 67 chr1 127265856 127266096 -154927568 + L2 LINE L2 3028 3268 -4 395 336 126 5 chr1 127267267 127267481 -154926183 + MIR SINE MIR 17 256 -6 425 229 68 91 chr1 127268245 127268630 -154925034 - L1MC5 LINE L1 -31 7930 7555 2268 102 0 3 chr1 127269430 127269745 -154923919 - AluSx SINE Alu 0 314 1 5156 267 123 32 chr1 127270317 127270433 -154923231 - L2 LINE L2 -54 3259 3155 1777 143 44 72 chr1 127270433 127270819 -154922845 - THE1C LTR MaLR 0 375 1 5156 267 123 32 chr1 127270819 127271192 -154922472 - L2 LINE L2 -158 3155 2817 993 197 56 0 chr1 127271192 127271390 -154922274 - MER3 DNA MER1_type 0 209 1 5156 267 123 32 chr1 127271390 127271989 -154921675 - L2 LINE L2 -496 2817 2274 1670 180 56 37 chr1 127271989 127272344 -154921320 + MLT1A1 LTR MaLR 1 362 -3 441 0 0 0 chr1 127272344 127272393 -154921271 + (CA)n Simple_repeat Simple_repeat 2 50 0 5156 267 123 32 chr1 127272393 127273900 -154919764 - L2 LINE L2 -1038 2275 443 366 328 50 20 chr1 127273927 127274125 -154919539 - L2 LINE L2 -57 3256 3053 243 204 0 0 chr1 127274243 127274287 -154919377 + Alu SINE Alu 111 154 -12 198 0 0 0 chr1 127274287 127274309 -154919355 + (TA)n Simple_repeat Simple_repeat 2 23 0 2042 143 0 0 chr1 127274823 127275110 -154918554 + AluSx SINE Alu 1 287 -25 1903 153 0 13 chr1 127275906 127276213 -154917451 - AluSg SINE Alu -3 307 5 409 164 0 0 chr1 127276625 127276686 -154916978 - AluJ/FLAM SINE Alu -241 61 1 1273 201 46 37 chr1 127276687 127277035 -154916629 - L1M4 LINE L1 -945 5201 4851 2073 94 45 3 chr1 127277057 127277343 -154916321 - AluSx SINE Alu -14 298 1 914 218 162 0 chr1 127277343 127277577 -154916087 + MER58B DNA MER1_type 70 341 0 217 360 29 50 chr1 127277732 127277871 -154915793 - MIR SINE MIR -57 151 16 1650 106 149 8 chr1 127278028 127278283 -154915381 + AluSg SINE Alu 1 291 -19 392 309 32 73 chr1 127279177 127279273 -154914391 - MIR SINE MIR -25 237 139 1598 154 32 83 chr1 127279273 127279585 -154914079 - AluJo SINE Alu -16 296 1 392 309 32 73 chr1 127279585 127279734 -154913930 - MIR SINE MIR -123 139 2 349 306 76 6 chr1 127279762 127279919 -154913745 - MIR SINE MIR 0 262 95 4367 137 55 18 chr1 127279933 127280700 -154912964 + L1MC1 LINE L1 5526 6320 -13 2099 129 14 3 chr1 127281150 127281445 -154912219 + AluSx SINE Alu 1 298 -14 2217 104 0 10 chr1 127282123 127282422 -154911242 + AluSx SINE Alu 1 296 -16 183 139 0 0 chr1 127282532 127282568 -154911096 + (T)n Simple_repeat Simple_repeat 1 36 0 382 245 101 0 chr1 127283654 127283793 -154909871 - L1ME4a LINE L1 -4 6117 5965 423 0 0 0 chr1 127283793 127283840 -154909824 + (TG)n Simple_repeat Simple_repeat 2 48 0 504 187 119 30 chr1 127284064 127284198 -154909466 + BC200 scRNA scRNA 2 147 -53 257 294 43 0 chr1 127284543 127284635 -154909029 - L1ME4a LINE L1 -286 5835 5740 22 35 0 0 chr1 127286104 127286133 -154907531 + AT_rich Low_complexity Low_complexity 1 29 0 1668 172 6 52 chr1 127286249 127286575 -154907089 - AluJo SINE Alu -1 311 1 327 153 82 71 chr1 127287031 127287129 -154906535 + MIR SINE MIR 91 189 -73 471 240 25 16 chr1 127287153 127287274 -154906390 - L2 LINE L2 -2 3311 3190 2271 114 0 0 chr1 127287618 127287915 -154905749 + AluSq SINE Alu 1 297 -16 404 273 12 61 chr1 127287954 127288085 -154905579 + L2 LINE L2 2587 2710 -604 1914 122 35 21 chr1 127288085 127288372 -154905292 - AluSq SINE Alu -22 291 1 404 273 12 61 chr1 127288372 127288405 -154905259 + L2 LINE L2 2710 2743 -571 326 245 77 87 chr1 127288435 127288631 -154905033 - L1ME3A LINE L1 -15 6155 5962 282 342 40 69 chr1 127288971 127289145 -154904519 - MER91A DNA MER1_type 0 196 27 1273 203 101 13 chr1 127289145 127289461 -154904203 - MER2 DNA MER2_type 0 344 1 282 342 40 69 chr1 127289461 127289488 -154904176 - MER91A DNA MER1_type -169 27 1 309 298 107 8 chr1 127289599 127289720 -154903944 - L2 LINE L2 -1 3312 3180 23 0 0 0 chr1 127289755 127289778 -154903886 + AT_rich Low_complexity Low_complexity 1 23 0 492 317 10 19 chr1 127289813 127290018 -154903646 - MIR SINE MIR -59 203 1 1740 165 4 0 chr1 127290267 127290546 -154903118 + AluJb SINE Alu 1 280 -32 2209 96 0 3 chr1 127290773 127291084 -154902580 - AluSc SINE Alu 0 310 1 714 221 106 19 chr1 127291109 127291317 -154902347 - MIR SINE MIR 0 262 37 211 307 0 27 chr1 127291338 127291413 -154902251 + MIR SINE MIR 30 102 -160 371 322 98 0 chr1 127291498 127291749 -154901915 - L1ME3A LINE L1 -342 5779 5497 343 255 66 28 chr1 127291783 127291970 -154901694 - MIR SINE MIR -10 252 1 2209 101 17 7 chr1 127292384 127292680 -154900984 - AluY SINE Alu -12 299 1 888 196 70 0 chr1 127292680 127292838 -154900826 - AluJb SINE Alu -11 301 133 1070 171 0 0 chr1 127292891 127293066 -154900598 - FRAM SINE Alu -1 175 1 681 119 184 0 chr1 127293170 127293306 -154900358 - AluSp/q SINE Alu 0 311 156 570 121 12 0 chr1 127293302 127293385 -154900279 + AluSg/x SINE Alu 209 292 -18 * 29 0 0 0 chr1 127293385 127293414 -154900250 + AT_rich Low_complexity Low_complexity 1 29 0 2015 146 0 0 chr1 127293914 127294201 -154899463 + AluSx SINE Alu 1 287 -25 2258 109 0 13 chr1 127294997 127295308 -154898356 - AluSg SINE Alu -3 307 1 1147 61 0 0 chr1 127295629 127295761 -154897903 + AluSq/x SINE Alu 2 133 -180 2271 106 0 3 chr1 127295767 127296078 -154897586 + AluSg SINE Alu 1 310 0 1117 184 0 14 chr1 127296845 127297063 -154896601 - Tigger7 DNA MER2_type 0 2587 2373 1439 156 7 81 chr1 127297063 127297346 -154896318 + AluJb SINE Alu 40 301 -11 273 119 0 0 chr1 127298096 127298138 -154895526 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 1933 156 10 0 chr1 127298367 127298662 -154895002 + AluJb SINE Alu 1 298 -14 1710 157 0 18 chr1 127298981 127299262 -154894402 + AluJo SINE Alu 34 309 -3 536 186 124 0 chr1 127299874 127299987 -154893677 + Charlie5 DNA MER1_type 1 127 -2485 * 1242 162 153 0 chr1 127299984 127300323 -154893341 + Charlie5 DNA MER1_type 2234 2624 0 255 214 0 43 chr1 127300947 127301017 -154892647 - Charlie8 DNA MER1_type -10 2407 2341 1311 164 0 18 chr1 127301075 127301295 -154892369 + AluSg/x SINE Alu 85 300 -10 2074 131 0 29 chr1 127301779 127302091 -154891573 - AluSx SINE Alu -9 303 1 562 123 219 0 chr1 127302121 127302235 -154891429 - L1PA16 LINE L1 -31 6135 5997 468 104 0 0 chr1 127302993 127303060 -154890604 + MER5A DNA MER1_type 3 69 -120 292 118 132 0 chr1 127303062 127303138 -154890526 + Charlie5 DNA MER1_type 2494 2579 -33 2495 76 0 10 chr1 127303138 127303452 -154890212 + AluY SINE Alu 1 311 0 1391 90 0 0 chr1 127303452 127303629 -154890035 + AluSg/x SINE Alu 130 306 -6 2283 101 16 0 chr1 127303656 127303962 -154889702 + AluSp SINE Alu 1 311 -2 320 113 19 0 chr1 127303962 127304015 -154889649 + Charlie5 DNA MER1_type 2571 2624 0 2302 107 3 0 chr1 127304067 127304377 -154889287 + AluSp SINE Alu 1 311 -2 435 164 173 27 chr1 127304616 127304726 -154888938 + MER5A DNA MER1_type 64 189 0 2205 114 0 3 chr1 127305851 127306149 -154887515 + AluSx SINE Alu 1 297 -15 779 30 0 10 chr1 127307017 127307116 -154886548 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 2031 130 0 10 chr1 127307116 127307400 -154886264 - AluSg SINE Alu -27 283 1 2061 151 0 3 chr1 127307425 127307737 -154885927 + AluJb SINE Alu 1 311 -1 196 211 53 35 chr1 127308179 127308236 -154885428 + MIR SINE MIR 132 189 -73 1896 137 11 0 chr1 127308975 127309260 -154884404 + AluSx SINE Alu 10 297 -15 747 174 33 0 chr1 127309277 127309398 -154884266 + FLAM_C SINE Alu 1 125 -18 2053 104 6 73 chr1 127309410 127309727 -154883937 + AluSx SINE Alu 1 296 -16 5202 171 104 69 chr1 127309730 127311809 -154881855 + L1MDa LINE L1 992 2995 -3545 2124 120 3 19 chr1 127311809 127312125 -154881539 + AluSq SINE Alu 3 313 0 5202 171 104 69 chr1 127312125 127312191 -154881473 + L1MDa LINE L1 2995 3057 -3483 1863 155 3 22 chr1 127312191 127312507 -154881157 + AluJb SINE Alu 1 310 -2 5202 171 104 69 chr1 127312507 127312832 -154880832 + L1MDa LINE L1 3057 3369 -3171 2098 131 20 0 chr1 127312832 127313130 -154880534 - AluSg SINE Alu -6 304 1 5202 171 104 69 chr1 127313130 127313258 -154880406 + L1MDa LINE L1 3369 3697 -2843 753 117 0 0 chr1 127313258 127313361 -154880303 - FLAM_C SINE Alu -40 103 1 718 268 18 0 chr1 127313374 127313602 -154880062 + L1MDa LINE L1 3797 4028 -2512 4410 160 43 57 chr1 127313603 127313989 -154879675 - L1MB3 LINE L1 -3 6180 5790 302 0 26 0 chr1 127313989 127314027 -154879637 + (CA)n Simple_repeat Simple_repeat 2 40 0 4410 160 43 57 chr1 127314027 127314196 -154879468 - L1MB3 LINE L1 -393 5790 5620 2874 3 0 0 chr1 127314196 127314506 -154879158 - AluYa8 SINE Alu 0 310 1 4410 160 43 57 chr1 127314506 127314629 -154879035 - L1MB3 LINE L1 -563 5620 5497 2378 86 3 0 chr1 127314629 127314932 -154878732 - AluSc SINE Alu -5 304 1 4410 160 43 57 chr1 127314932 127315108 -154878556 - L1MB3 LINE L1 -686 5497 5320 1557 201 3 20 chr1 127315108 127315401 -154878263 - AluJo SINE Alu -22 290 3 4410 160 43 57 chr1 127315401 127315423 -154878241 - L1MB3 LINE L1 -863 5320 5299 2204 104 0 26 chr1 127315423 127315730 -154877934 + AluSx SINE Alu 1 299 -13 4410 160 43 57 chr1 127315730 127316077 -154877587 - L1MB3 LINE L1 -884 5299 4949 2359 98 3 0 chr1 127316077 127316384 -154877280 - AluSp SINE Alu -5 308 1 4410 160 43 57 chr1 127316384 127316769 -154876895 - L1MB3 LINE L1 -1234 4949 4566 2304 179 57 41 chr1 127316773 127317078 -154876586 - L1MB3 LINE L1 -1639 4507 4208 2169 106 3 47 chr1 127317078 127317398 -154876266 - AluSx SINE Alu -6 306 1 2304 179 57 41 chr1 127317398 127317707 -154875957 - L1MB3 LINE L1 -1938 4208 3883 21 36 0 0 chr1 127317725 127317753 -154875911 + AT_rich Low_complexity Low_complexity 1 28 0 683 202 0 16 chr1 127317812 127317941 -154875723 + AluJb SINE Alu 174 300 -12 772 176 0 15 chr1 127317948 127318079 -154875585 + FLAM_A SINE Alu 1 129 -4 834 321 18 22 chr1 127318089 127318366 -154875298 - L2 LINE L2 -218 3095 2820 255 228 13 51 chr1 127319804 127319849 -154873815 + CT-rich Low_complexity Low_complexity 6 48 -33 2481 87 0 3 chr1 127319849 127320159 -154873505 - AluSc SINE Alu 0 309 1 255 228 13 51 chr1 127320159 127320192 -154873472 + CT-rich Low_complexity Low_complexity 48 81 0 1732 166 14 0 chr1 127320396 127320680 -154872984 - AluJo SINE Alu -24 288 1 230 0 0 0 chr1 127321356 127321386 -154872278 + Alu SINE Alu 262 291 -10 21 0 0 0 chr1 127321716 127321737 -154871927 + AT_rich Low_complexity Low_complexity 1 21 0 2277 103 0 0 chr1 127321779 127322090 -154871574 - AluY SINE Alu 0 311 1 27 62 0 0 chr1 127322225 127322273 -154871391 + AT_rich Low_complexity Low_complexity 1 48 0 1353 164 39 92 chr1 127322456 127322761 -154870903 + AluJo SINE Alu 5 293 -19 278 314 33 127 chr1 127323094 127323393 -154870271 - L2 LINE L2 -6 3266 2996 531 145 12 0 chr1 127324756 127324839 -154868825 + FRAM SINE Alu 70 153 -23 2242 70 28 3 chr1 127324849 127325136 -154868528 + AluSc SINE Alu 1 294 -15 470 309 68 38 chr1 127325145 127325381 -154868283 + MIR SINE MIR 20 262 0 208 305 32 64 chr1 127325566 127325753 -154867911 - L2 LINE L2 -209 3063 2883 1075 161 5 10 chr1 127325856 127326048 -154867616 + L1MB5 LINE L1 5925 6115 -59 254 291 0 0 chr1 127326295 127326350 -154867314 - L2 LINE L2 -15 3298 3244 393 191 43 67 chr1 127326640 127326849 -154866815 - L1MC5 LINE L1 -281 7680 7477 500 219 47 33 chr1 127326856 127327071 -154866593 - L1MC5 LINE L1 -447 7514 7297 996 115 0 6 chr1 127327928 127328084 -154865580 + L1PA15 LINE L1 6010 6164 -1 40 67 0 0 chr1 127328247 127328322 -154865342 + AT_rich Low_complexity Low_complexity 1 75 0 1775 140 32 4 chr1 127328394 127328673 -154864991 + AluJb SINE Alu 1 287 -25 509 322 51 46 chr1 127328704 127329157 -154864507 + L1MC4a LINE L1 4779 5233 -913 816 214 40 59 chr1 127329185 127329489 -154864175 + L1MC4a LINE L1 5263 5560 -2248 734 83 0 113 chr1 127329501 127329634 -154864030 - FLAM_C SINE Alu -14 129 12 650 191 32 82 chr1 127329641 127329861 -154863803 + L1MC4a LINE L1 5638 5846 -1962 24 77 0 0 chr1 127330072 127330124 -154863540 + AT_rich Low_complexity Low_complexity 1 52 0 2831 10 0 0 chr1 127330364 127330674 -154862990 + AluYa5 SINE Alu 1 310 -1 689 33 22 0 chr1 127330887 127330978 -154862686 + (TTCCC)n Simple_repeat Simple_repeat 2 94 0 1734 176 7 3 chr1 127330990 127331285 -154862379 - AluJb SINE Alu -11 301 6 21 0 0 0 chr1 127331320 127331341 -154862323 + AT_rich Low_complexity Low_complexity 1 21 0 2148 104 0 4 chr1 127331341 127331650 -154862014 + AluSg SINE Alu 1 308 0 1629 151 58 22 chr1 127331660 127331938 -154861726 - AluJo SINE Alu -24 288 1 189 0 0 0 chr1 127332365 127332386 -154861278 + (T)n Simple_repeat Simple_repeat 1 21 0 32 0 0 0 chr1 127332475 127332507 -154861157 + AT_rich Low_complexity Low_complexity 1 32 0 999 85 0 16 chr1 127332507 127332636 -154861028 - AluJb SINE Alu -185 127 1 2355 98 0 0 chr1 127332953 127333250 -154860414 + AluSg SINE Alu 1 297 -13 1003 280 54 93 chr1 127334095 127334388 -154859276 - L2 LINE L2 0 3313 3010 2190 101 3 0 chr1 127334388 127334674 -154858990 - AluSg SINE Alu -23 287 1 1003 280 54 93 chr1 127334674 127335095 -154858569 - L2 LINE L2 -303 3010 2643 384 188 42 21 chr1 127335120 127335216 -154858448 - MLT1K LTR MaLR -3 585 488 261 255 160 0 chr1 127335373 127335467 -154858197 - MLT1K LTR MaLR -327 261 153 360 323 24 8 chr1 127335589 127335713 -154857951 - MLT1K LTR MaLR -444 144 19 2157 94 7 7 chr1 127335732 127336020 -154857644 + AluSg SINE Alu 1 288 -22 217 0 61 0 chr1 127336023 127336056 -154857608 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 234 267 53 27 chr1 127336243 127336318 -154857346 + L2 LINE L2 3220 3296 -17 29 70 0 0 chr1 127336324 127336381 -154857283 + AT_rich Low_complexity Low_complexity 1 57 0 1818 138 0 30 chr1 127336884 127337180 -154856484 - AluSx SINE Alu -23 289 3 293 214 36 0 chr1 127338387 127338443 -154855221 - Charlie1 DNA MER1_type -2701 60 3 415 241 94 49 chr1 127338563 127338766 -154854898 - MLT1J LTR MaLR -298 213 2 1681 108 0 0 chr1 127338891 127339114 -154854550 + AluSc SINE Alu 1 223 -86 880 142 0 8 chr1 127339289 127339423 -154854241 + FLAM_C SINE Alu 11 143 0 1761 161 3 32 chr1 127339638 127339923 -154853741 + AluJb SINE Alu 17 293 -19 2328 90 0 10 chr1 127340439 127340739 -154852925 - AluSx SINE Alu -15 297 1 362 219 12 0 chr1 127340781 127340863 -154852801 - AluJ/FLAM SINE Alu -219 83 1 268 178 67 0 chr1 127340868 127340913 -154852751 - L2 LINE L2 -16 3256 3209 1380 138 4 35 chr1 127340947 127341179 -154852485 - AluJb SINE Alu -87 225 1 2300 98 0 0 chr1 127341388 127341694 -154851970 + AluSx SINE Alu 1 306 -6 30 27 0 0 chr1 127343362 127343399 -154850265 + AT_rich Low_complexity Low_complexity 1 37 0 415 172 215 0 chr1 127343719 127343812 -154849852 + FLAM_A SINE Alu 4 116 -17 1181 171 139 16 chr1 127343812 127344069 -154849595 - AluJo SINE Alu -12 290 1 180 0 0 0 chr1 127344859 127344879 -154848785 + (T)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr1 127346658 127346683 -154846981 + AT_rich Low_complexity Low_complexity 1 25 0 279 0 0 0 chr1 127347048 127347079 -154846585 + (TG)n Simple_repeat Simple_repeat 2 32 0 319 290 65 28 chr1 127347089 127347196 -154846468 - MIR3 SINE MIR -22 186 76 25 0 0 0 chr1 127347208 127347233 -154846431 + AT_rich Low_complexity Low_complexity 1 25 0 195 281 18 0 chr1 127347239 127347296 -154846368 - MIR SINE MIR -132 76 19 948 168 79 11 chr1 127347521 127347711 -154845953 + MER3 DNA MER1_type 5 207 -2 406 215 39 46 chr1 127347848 127347978 -154845686 - MER103 DNA DNA -7 159 31 630 295 43 19 chr1 127348070 127348280 -154845384 + MIR SINE MIR 48 262 0 3184 190 112 49 chr1 127348403 127348989 -154844675 - L1MD2 LINE L1 -14 6228 5680 1863 148 45 9 chr1 127348989 127349320 -154844344 - MER2 DNA MER2_type 0 344 2 3184 190 112 49 chr1 127349320 127349635 -154844029 - L1MD2 LINE L1 -562 5680 5386 243 0 0 0 chr1 127349635 127349662 -154844002 + (TG)n Simple_repeat Simple_repeat 2 28 0 210 71 0 0 chr1 127349661 127349689 -154843975 + (CATATA)n Simple_repeat Simple_repeat 3 30 0 * 3184 190 112 49 chr1 127349662 127349690 -154843974 - L1MD2 LINE L1 -856 5386 5361 2348 78 0 3 chr1 127349690 127349985 -154843679 - AluSq SINE Alu -19 294 1 3184 190 112 49 chr1 127349985 127350105 -154843559 - L1MD2 LINE L1 -881 5361 5188 2161 122 3 3 chr1 127350119 127350431 -154843233 - AluSx SINE Alu 0 312 1 614 243 17 33 chr1 127350557 127350747 -154842917 - L1ME LINE L1 -439 5682 5498 330 329 0 13 chr1 127350885 127351040 -154842624 - L1ME4a LINE L1 -271 5850 5698 181 259 17 35 chr1 127351730 127351788 -154841876 - L3b LINE CR1 -258 1325 1269 22 0 0 0 chr1 127352770 127352792 -154840872 + AT_rich Low_complexity Low_complexity 1 22 0 440 246 14 49 chr1 127353930 127354072 -154839592 - MIR SINE MIR -86 176 40 359 330 135 66 chr1 127354407 127355323 -154838341 - L2 LINE L2 -5 3267 2250 1682 145 76 3 chr1 127355323 127355612 -154838052 + AluSx SINE Alu 1 310 -2 359 330 135 66 chr1 127355612 127355843 -154837821 - L2 LINE L2 -1022 2250 2036 325 229 312 0 chr1 127356055 127356164 -154837500 + MER5A DNA MER1_type 41 183 -6 24 0 0 0 chr1 127356237 127356261 -154837403 + AT_rich Low_complexity Low_complexity 1 24 0 197 143 48 0 chr1 127356433 127356475 -154837189 + CT-rich Low_complexity Low_complexity 2 45 0 454 239 17 43 chr1 127356475 127356592 -154837072 - AluJo SINE Alu -12 300 187 765 258 0 17 chr1 127356679 127356857 -154836807 - AluJo SINE Alu -123 189 15 191 237 0 0 chr1 127356880 127356918 -154836746 - MER5A DNA MER1_type -135 54 17 304 324 45 34 chr1 127358318 127358494 -154835170 - MER5B DNA MER1_type 0 178 1 745 120 99 0 chr1 127358921 127359063 -154834601 - L1MB4 LINE L1 -8 6172 6017 3180 199 79 54 chr1 127359488 127360308 -154833356 - MER21B LTR ERV1 -22 841 1 246 269 43 0 chr1 127360313 127360406 -154833258 - L1ME LINE L1 -395 5769 5673 240 222 37 0 chr1 127360428 127360482 -154833182 - FLAM SINE Alu -23 110 55 1239 229 123 107 chr1 127360633 127361697 -154831967 - HAL1 LINE L1 -935 1572 492 323 251 66 78 chr1 127361902 127362069 -154831595 - HAL1 LINE L1 -2342 165 1 373 254 123 27 chr1 127362129 127362389 -154831275 + L1M4 LINE L1 4487 4771 -1375 1218 95 0 18 chr1 127362435 127362603 -154831061 - AluJb SINE Alu -147 165 1 1355 192 61 30 chr1 127362605 127362991 -154830673 - MLT1D LTR MaLR -37 468 1 260 339 95 68 chr1 127363534 127363755 -154829909 + L2 LINE L2 2999 3225 -47 601 206 0 0 chr1 127363770 127363867 -154829797 + Tigger3b DNA MER2_type 4 100 -1131 * 4651 113 131 20 chr1 127363862 127364528 -154829136 + Tigger3b DNA MER2_type 276 1061 -1967 1748 139 57 42 chr1 127364528 127364860 -154828804 + MER1B DNA MER1_type 1 337 0 4651 113 131 20 chr1 127364860 127365053 -154828611 + Tigger3b DNA MER2_type 1061 1231 0 302 365 95 25 chr1 127365099 127365340 -154828324 - L3 LINE CR1 -300 1277 1020 561 286 201 14 chr1 127365396 127365749 -154827915 - MLT1J LTR MaLR -51 460 42 183 186 0 0 chr1 127365793 127365836 -154827828 + T-rich Low_complexity Low_complexity 1 43 0 211 278 175 21 chr1 127366068 127366165 -154827499 - L2 LINE L2 -8 3305 3194 296 200 67 0 chr1 127366205 127366265 -154827399 - MER58B DNA MER1_type -2 339 276 2258 148 47 18 chr1 127366267 127366713 -154826951 + L1M2 LINE L1 5267 5725 -575 337 344 169 28 chr1 127367225 127367880 -154825784 - L2 LINE L2 -499 2815 2068 245 266 94 47 chr1 127367901 127368029 -154825635 - L2 LINE L2 -1390 1924 1791 261 295 0 32 chr1 127368081 127368176 -154825488 - MLT1K LTR MaLR -16 572 481 2191 115 0 0 chr1 127369254 127369550 -154824114 - AluSg1 SINE Alu -13 296 1 189 347 83 42 chr1 127370531 127370675 -154822989 - L2 LINE L2 -223 3049 2900 2163 119 3 13 chr1 127370691 127371002 -154822662 + AluSx SINE Alu 1 308 -4 266 297 109 36 chr1 127372205 127372370 -154821294 + L2 LINE L2 2656 2832 -482 1484 151 46 63 chr1 127372458 127372743 -154820921 - AluJo SINE Alu -8 304 25 426 213 0 0 chr1 127372785 127372860 -154820804 + FLAM_A SINE Alu 1 75 -57 195 354 250 28 chr1 127372902 127373114 -154820550 + L2 LINE L2 3009 3267 -5 1879 154 20 0 chr1 127373657 127373950 -154819714 + AluSx SINE Alu 4 302 -10 2334 94 0 0 chr1 127373966 127374264 -154819400 + AluSq SINE Alu 1 298 -15 1065 151 12 6 chr1 127374414 127374586 -154819078 - AluJb SINE Alu -8 304 132 2211 80 0 10 chr1 127374587 127374898 -154818766 - AluY SINE Alu 0 311 1 24 0 0 0 chr1 127374903 127374927 -154818737 + AT_rich Low_complexity Low_complexity 1 24 0 573 301 30 10 chr1 127375007 127375210 -154818454 - MER63A DNA MER1_type -3 207 1 2331 88 0 13 chr1 127375261 127375568 -154818096 - AluSc SINE Alu -6 303 1 23 0 0 0 chr1 127375741 127375764 -154817900 + AT_rich Low_complexity Low_complexity 1 23 0 1898 134 7 0 chr1 127375765 127376048 -154817616 - AluSx SINE Alu -27 285 1 302 310 110 0 chr1 127376356 127376501 -154817163 - L1P LINE L1 -1092 5054 4894 230 266 213 21 chr1 127376725 127376819 -154816845 - HAL1 LINE L1 -11 2496 2385 21 0 0 0 chr1 127376884 127376905 -154816759 + AT_rich Low_complexity Low_complexity 1 21 0 229 203 47 0 chr1 127376905 127376969 -154816695 - L1MA2 LINE L1 0 6304 6238 198 0 0 0 chr1 127377460 127377482 -154816182 + (T)n Simple_repeat Simple_repeat 1 22 0 990 261 112 38 chr1 127377870 127378495 -154815169 - HAL1 LINE L1 -744 1763 1093 232 338 60 23 chr1 127378506 127378639 -154815025 - HAL1 LINE L1 -1604 903 766 1225 300 71 18 chr1 127378790 127379350 -154814314 - MLT1L LTR MaLR -10 605 16 287 292 52 0 chr1 127379729 127379825 -154813839 - L1MC5 LINE L1 -62 7899 7799 2616 196 41 26 chr1 127379947 127380558 -154813106 - LTR26E LTR ERV1 -2 620 1 3441 161 18 2 chr1 127381152 127381769 -154811895 - L1MB2 LINE L1 0 6171 5545 25 0 0 0 chr1 127385332 127385357 -154808307 + AT_rich Low_complexity Low_complexity 1 25 0 399 256 174 6 chr1 127387953 127388125 -154805539 - MIR SINE MIR -11 251 51 1782 142 24 3 chr1 127388493 127388781 -154804883 - AluJo SINE Alu -16 296 3 307 288 206 39 chr1 127389380 127389613 -154804051 - L2 LINE L2 0 3272 3001 22 0 0 0 chr1 127390228 127390250 -154803414 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 127390633 127390654 -154803010 + AT_rich Low_complexity Low_complexity 1 21 0 1590 67 96 25 chr1 127391029 127391269 -154802395 - AluSq SINE Alu -6 307 51 647 279 11 31 chr1 127391791 127392059 -154801605 - Charlie8 DNA MER1_type -2149 268 11 2375 64 0 0 chr1 127392083 127392399 -154801265 - AluY SINE Alu 0 316 1 2346 61 0 42 chr1 127393201 127393512 -154800152 - AluY SINE Alu -13 298 1 344 261 78 35 chr1 127393850 127393965 -154799699 - L2 LINE L2 -12 3260 3141 234 182 6 63 chr1 127394021 127394142 -154799522 + A-rich Low_complexity Low_complexity 1 160 0 31 76 0 0 chr1 127394164 127394230 -154799434 + AT_rich Low_complexity Low_complexity 1 66 0 213 226 83 60 chr1 127394263 127394347 -154799317 - L2 LINE L2 -9 3304 3219 * 229 350 126 23 chr1 127394337 127394551 -154799113 - L2 LINE L2 -385 2929 2694 366 228 102 96 chr1 127394554 127394751 -154798913 + L1ME1 LINE L1 2944 3141 -3005 241 228 76 51 chr1 127394769 127394848 -154798816 - L2 LINE L2 -4 3309 3229 1827 186 0 0 chr1 127394859 127395155 -154798509 - AluJo SINE Alu -16 296 1 1254 184 24 0 chr1 127395314 127395526 -154798138 + AluJo SINE Alu 2 218 -94 2018 135 16 0 chr1 127395560 127395863 -154797801 + AluSq SINE Alu 1 308 -5 193 352 42 0 chr1 127395872 127395943 -154797721 - L2 LINE L2 -214 3058 2985 3718 227 63 14 chr1 127395945 127396600 -154797064 + L1ME1 LINE L1 3563 4297 -1849 2359 51 54 3 chr1 127396600 127396896 -154796768 + AluY SINE Alu 1 311 0 3718 227 63 14 chr1 127396896 127397349 -154796315 + L1ME1 LINE L1 4297 4726 -1420 1864 181 115 92 chr1 127397361 127398058 -154795606 + L1ME1 LINE L1 5449 6161 -5 856 169 15 0 chr1 127398174 127398304 -154795360 - FLAM_C SINE Alu -11 132 1 2114 88 46 3 chr1 127398423 127398707 -154794957 - AluSc SINE Alu -13 296 1 29 78 0 0 chr1 127398767 127398831 -154794833 + AT_rich Low_complexity Low_complexity 1 64 0 1594 153 61 14 chr1 127399003 127399297 -154794367 + AluJo SINE Alu 1 308 -4 680 304 205 31 chr1 127399330 127400130 -154793534 + HAL1 LINE L1 48 986 -1521 908 156 99 5 chr1 127400159 127400371 -154793293 + L1MA8 LINE L1 6056 6287 -4 2019 141 16 7 chr1 127400452 127400758 -154792906 + AluJb SINE Alu 1 309 -3 1750 238 110 70 chr1 127400765 127401009 -154792655 + HAL1 LINE L1 1096 1329 -1178 1803 181 3 3 chr1 127401009 127401308 -154792356 + AluJb SINE Alu 5 303 -9 1750 238 110 70 chr1 127401308 127402120 -154791544 + HAL1 LINE L1 1329 2194 -313 466 259 107 0 chr1 127402165 127402296 -154791368 - MIR SINE MIR -12 250 106 249 248 150 0 chr1 127402296 127402409 -154791255 + HAL1 LINE L1 2239 2368 -139 532 183 55 116 chr1 127403168 127403269 -154790395 + MER58B DNA MER1_type 188 277 -2143 3500 133 11 8 chr1 127403269 127403794 -154789870 - MER1A DNA MER1_type 0 527 1 532 183 55 116 chr1 127403794 127403856 -154789808 + MER58B DNA MER1_type 277 341 0 402 114 0 0 chr1 127404230 127404300 -154789364 + (CCCTG)n Simple_repeat Simple_repeat 3 72 0 1554 162 18 15 chr1 127404328 127404600 -154789064 - AluSx SINE Alu -23 289 17 229 361 62 49 chr1 127404643 127404787 -154788877 + L2 LINE L2 2982 3127 -145 463 213 7 4 chr1 127405326 127405467 -154788197 + MIR SINE MIR 2 196 -66 3590 106 41 9 chr1 127405480 127406168 -154787496 + Tigger3b DNA MER2_type 1 761 -471 1196 190 190 0 chr1 127406170 127406287 -154787377 + AluJo SINE Alu 1 94 -218 219 36 0 0 chr1 127406287 127406315 -154787349 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1196 190 190 0 chr1 127406315 127406444 -154787220 + AluJo SINE Alu 94 294 -18 2341 151 61 9 chr1 127406445 127406636 -154787028 + Tigger3b DNA MER2_type 751 931 -2098 2309 92 13 3 chr1 127406636 127406942 -154786722 - AluSq SINE Alu -4 309 1 2341 151 61 9 chr1 127406942 127407207 -154786457 + Tigger3b DNA MER2_type 931 1231 -1 182 194 0 28 chr1 127407207 127407243 -154786421 + MIR SINE MIR 198 232 -30 366 341 45 8 chr1 127407482 127407614 -154786050 + L2 LINE L2 3136 3272 0 1930 143 3 23 chr1 127408229 127408536 -154785128 - AluSx SINE Alu -11 301 1 5636 140 33 6 chr1 127408537 127409831 -154783833 + L1MA5 LINE L1 4962 6297 -3 2236 114 0 3 chr1 127410131 127410437 -154783227 + AluSq SINE Alu 1 305 -8 1703 310 77 43 chr1 127411373 127411467 -154782197 + L2 LINE L2 2034 2123 -1190 1634 174 91 4 chr1 127411467 127411743 -154781921 - AluJb SINE Alu -12 300 1 1703 310 77 43 chr1 127411743 127412521 -154781143 + L2 LINE L2 2123 2964 -349 2064 110 3 17 chr1 127412521 127412821 -154780843 - AluSq SINE Alu -17 296 1 1703 310 77 43 chr1 127412821 127412920 -154780744 + L2 LINE L2 2964 3058 -255 2520 57 0 0 chr1 127412925 127413223 -154780441 - AluY SINE Alu -13 298 1 182 314 0 0 chr1 127413323 127413374 -154780290 + L2 LINE L2 3208 3258 -55 644 209 0 8 chr1 127413600 127413729 -154779935 + MER3 DNA MER1_type 29 156 -53 251 210 16 0 chr1 127413730 127413792 -154779872 - L1ME LINE L1 -287 5834 5772 2229 144 0 0 chr1 127413888 127414200 -154779464 - AluSx SINE Alu 0 312 1 1254 171 33 8 chr1 127414255 127414500 -154779164 - MLT1A1 LTR MaLR 0 365 115 2963 178 13 44 chr1 127414545 127414994 -154778670 - MLT1A1-int LTR MaLR -1124 611 186 2333 122 0 0 chr1 127414994 127415306 -154778358 - AluSx SINE Alu 0 312 1 2963 178 13 44 chr1 127415306 127415487 -154778177 - MLT1A1-int LTR MaLR -1549 186 1 1478 170 101 9 chr1 127415487 127415805 -154777859 - MLT1A1 LTR MaLR 0 365 19 342 288 152 4 chr1 127415818 127416068 -154777596 - L1ME LINE L1 -359 5762 5476 1576 155 25 40 chr1 127416086 127416364 -154777300 + AluJo SINE Alu 5 278 -34 22 0 0 0 chr1 127416491 127416513 -154777151 + AT_rich Low_complexity Low_complexity 1 22 0 331 281 16 70 chr1 127416655 127416775 -154776889 - L1ME LINE L1 -1312 4834 4726 2276 106 0 0 chr1 127416775 127417068 -154776596 - AluSg SINE Alu -17 293 1 331 281 16 70 chr1 127417068 127417132 -154776532 - L1ME LINE L1 -1420 4726 4660 2238 87 0 22 chr1 127417360 127417672 -154775992 - AluSx SINE Alu -7 305 1 1559 166 25 65 chr1 127417717 127418042 -154775622 - AluJo SINE Alu 0 312 1 497 310 70 55 chr1 127418047 127418088 -154775576 - L1ME LINE L1 -1686 4460 4421 2209 172 36 2 chr1 127418088 127418529 -154775135 - L1MB3 LINE L1 0 6183 5728 497 310 70 55 chr1 127418529 127418871 -154774793 - L1ME LINE L1 -1725 4421 4071 887 286 84 62 chr1 127419051 127419708 -154773956 - MER21B LTR ERV1 -170 693 23 6522 95 36 12 chr1 127419731 127420342 -154773322 - L1MA2 LINE L1 0 6304 5652 2144 140 0 9 chr1 127420342 127420657 -154773007 - AluSx SINE Alu 0 312 1 6522 95 36 12 chr1 127420657 127421163 -154772501 - L1MA2 LINE L1 -652 5652 5160 403 138 0 0 chr1 127421194 127421252 -154772412 - AluS SINE Alu -29 280 223 1760 145 20 40 chr1 127421295 127421599 -154772065 - AluJb SINE Alu -14 298 1 186 242 76 76 chr1 127421687 127421753 -154771911 - L2 LINE L2 0 3313 3248 234 146 83 42 chr1 127421801 127421849 -154771815 - L2 LINE L2 -2 3311 3262 449 176 120 37 chr1 127421852 127421960 -154771704 - L2 LINE L2 -9 3304 3188 207 100 0 0 chr1 127422224 127422254 -154771410 + (TA)n Simple_repeat Simple_repeat 2 31 0 501 250 22 2 chr1 127422282 127422397 -154771267 + MIR SINE MIR 2 119 -89 2212 115 0 13 chr1 127423298 127423602 -154770062 - AluSq SINE Alu -13 300 1 1667 122 4 8 chr1 127424725 127424963 -154768701 - AluSx SINE Alu -12 300 64 7625 145 11 30 chr1 127424990 127425806 -154767858 - L1M1 LINE L1 -637 7087 6257 2190 127 0 0 chr1 127425806 127426106 -154767558 + AluSx SINE Alu 1 300 -12 7625 145 11 30 chr1 127426106 127426309 -154767355 - L1M1 LINE L1 -1467 6257 6052 2209 81 10 34 chr1 127426309 127426653 -154767011 - AluSx SINE Alu 0 312 1 7625 145 11 30 chr1 127426653 127426833 -154766831 - L1M1 LINE L1 -1672 6052 5870 2155 85 43 0 chr1 127426833 127427114 -154766550 - AluY SINE Alu -18 293 1 7625 145 11 30 chr1 127427114 127427290 -154766374 - L1M1 LINE L1 -1854 5870 5692 2399 70 0 17 chr1 127427290 127427588 -154766076 + AluY SINE Alu 1 293 -18 7625 145 11 30 chr1 127427588 127428146 -154765518 - L1M1 LINE L1 -2032 5692 5193 840 184 6 45 chr1 127428176 127428355 -154765309 - AluSg/x SINE Alu -27 283 112 2313 103 0 0 chr1 127428355 127428685 -154764979 + THE1-int LTR MaLR 833 1162 -418 17759 136 29 23 chr1 127428692 127429136 -154764528 - L1M1 LINE L1 -3360 4205 3765 2690 78 20 0 chr1 127429136 127429484 -154764180 + THE1A LTR MaLR 1 355 0 11454 91 16 6 chr1 127429484 127429981 -154763683 + THE1A-int LTR MaLR 1 491 -1089 2304 124 0 6 chr1 127429981 127430295 -154763369 + AluSx SINE Alu 1 312 0 11454 91 16 6 chr1 127430295 127431361 -154762303 + THE1A-int LTR MaLR 491 1580 0 2839 56 3 8 chr1 127431361 127431718 -154761946 + THE1A LTR MaLR 1 355 0 17759 136 29 23 chr1 127431718 127432634 -154761030 - L1M1 LINE L1 -3800 3765 2855 1696 175 16 22 chr1 127432634 127432948 -154760716 + AluJo SINE Alu 1 312 0 17759 136 29 23 chr1 127432948 127433605 -154760059 - L1M1 LINE L1 -4710 2855 2203 1950 154 29 10 chr1 127433605 127433911 -154759753 - AluJb SINE Alu 0 312 1 17759 136 29 23 chr1 127433911 127435505 -154758159 - L1M1 LINE L1 -5362 2203 569 2368 49 0 18 chr1 127436215 127436499 -154757165 + AluY SINE Alu 23 301 -10 855 308 20 8 chr1 127436721 127436971 -154756693 - MIR SINE MIR -8 254 2 1852 155 14 0 chr1 127438338 127438472 -154755192 + AluJo SINE Alu 1 132 -180 180 0 0 0 chr1 127438472 127438492 -154755172 + (TA)n Simple_repeat Simple_repeat 2 21 0 1852 155 14 0 chr1 127438492 127438648 -154755016 + AluJo SINE Alu 132 295 -17 556 185 154 0 chr1 127439047 127439177 -154754487 - MIR SINE MIR 0 262 113 198 313 75 0 chr1 127439457 127439524 -154754140 - L3 LINE CR1 -14 1563 1492 394 240 68 34 chr1 127439524 127439670 -154753994 + MIR SINE MIR 112 262 0 239 418 25 8 chr1 127439671 127439793 -154753871 - L3 LINE CR1 -86 1491 1368 1617 173 77 0 chr1 127440038 127440310 -154753354 - AluJb SINE Alu -19 293 1 531 331 171 34 chr1 127440605 127440641 -154753023 + L2 LINE L2 2437 2467 -805 2142 117 0 23 chr1 127440641 127440940 -154752724 - AluSx SINE Alu -20 292 1 531 331 171 34 chr1 127440940 127441614 -154752050 + L2 LINE L2 2467 3272 0 761 141 0 87 chr1 127442286 127442435 -154751229 + FLAM_A SINE Alu 7 142 0 23 78 0 0 chr1 127442800 127442851 -154750813 + AT_rich Low_complexity Low_complexity 1 51 0 1771 152 7 10 chr1 127443823 127444126 -154749538 - AluJb SINE Alu -10 302 1 691 206 112 85 chr1 127445406 127445540 -154748124 - L1MC4 LINE L1 -809 7233 7104 183 80 0 0 chr1 127445540 127445565 -154748099 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 691 206 112 85 chr1 127445565 127445622 -154748042 - L1MC4 LINE L1 -938 7104 7050 718 191 0 22 chr1 127445622 127445758 -154747906 + FLAM_C SINE Alu 1 133 0 691 206 112 85 chr1 127445758 127445930 -154747734 - L1MC4 LINE L1 -992 7050 6859 777 226 157 16 chr1 127445937 127446242 -154747422 - L1MEc LINE L1 -3321 2894 2547 588 148 48 21 chr1 127446304 127446430 -154747234 - L1MC5 LINE L1 -364 7678 7502 388 263 163 53 chr1 127446431 127446621 -154747043 - L1MEc LINE L1 -3743 2472 2262 1018 187 0 0 chr1 127446641 127446812 -154746852 - AluJo SINE Alu -139 173 3 227 232 72 0 chr1 127446824 127446893 -154746771 - L1MEc LINE L1 -4079 2317 2244 678 241 41 91 chr1 127447235 127447554 -154746110 - L1MEc LINE L1 -4582 1814 1512 203 182 0 0 chr1 127447855 127447888 -154745776 + MIR SINE MIR 224 256 -6 217 259 150 41 chr1 127448567 127448714 -154744950 + MIR SINE MIR 50 212 -50 402 21 0 0 chr1 127450616 127450663 -154743001 + (TG)n Simple_repeat Simple_repeat 2 48 0 324 0 0 0 chr1 127451095 127451131 -154742533 + (TG)n Simple_repeat Simple_repeat 2 37 0 1394 79 6 0 chr1 127452608 127452786 -154740878 - AluSq SINE Alu -4 309 131 453 211 148 122 chr1 127452974 127453211 -154740453 + MIR SINE MIR 20 262 0 528 338 63 34 chr1 127453707 127454056 -154739608 + L2 LINE L2 2432 2790 -524 831 222 127 102 chr1 127454096 127454780 -154738884 - L1MEc LINE L1 -4760 1636 936 2321 235 67 53 chr1 127454821 127455601 -154738063 - L1MEc LINE L1 -5530 866 76 188 245 143 0 chr1 127455606 127455655 -154738009 + L2 LINE L2 2395 2450 -864 882 275 163 29 chr1 127455683 127456337 -154737327 + L2 LINE L2 2550 3313 0 13947 126 112 21 chr1 127456397 127458147 -154735517 - Tigger2 DNA MER2_type 0 2718 671 408 40 0 0 chr1 127458147 127458197 -154735467 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 13947 126 112 21 chr1 127458197 127458936 -154734728 - Tigger2 DNA MER2_type -2047 671 1 3086 94 29 63 chr1 127459254 127459744 -154733920 + MER1A DNA MER1_type 57 529 0 2264 109 0 6 chr1 127460260 127460572 -154733092 - AluY SINE Alu -1 310 1 2116 108 10 3 chr1 127460772 127461067 -154732597 - AluSc SINE Alu -12 297 1 692 177 0 57 chr1 127461124 127461137 -154732527 - FLAM_A SINE Alu -169 133 121 2092 139 0 3 chr1 127461137 127461440 -154732224 + AluSx SINE Alu 1 302 -10 692 177 0 57 chr1 127461440 127461567 -154732097 - FLAM_A SINE Alu -181 121 1 2227 102 0 20 chr1 127462444 127462747 -154730917 - AluSx SINE Alu -15 297 1 23 33 0 0 chr1 127463362 127463392 -154730272 + AT_rich Low_complexity Low_complexity 1 30 0 2587 51 0 0 chr1 127468497 127468808 -154724856 - AluY SINE Alu 0 311 1 2237 98 10 0 chr1 127469279 127469574 -154724090 + AluSp SINE Alu 1 298 -15 2458 122 7 24 chr1 127469773 127470190 -154723474 + L1PA16 LINE L1 5751 6160 -6 354 219 49 0 chr1 127470517 127470599 -154723065 + MIR SINE MIR 117 202 -60 256 244 12 24 chr1 127471513 127471595 -154722069 + A-rich Low_complexity Low_complexity 5 85 0 338 245 137 54 chr1 127471822 127472026 -154721638 + MIR SINE MIR 26 246 -16 315 275 0 73 chr1 127472380 127472489 -154721175 - L2 LINE L2 -1 3312 3212 724 195 0 0 chr1 127472876 127472999 -154720665 - FLAM_A SINE Alu -10 123 1 310 21 21 21 chr1 127473204 127473252 -154720412 + (GA)n Simple_repeat Simple_repeat 1 48 0 183 138 0 0 chr1 127473385 127473414 -154720250 - MIR SINE MIR -116 146 118 2403 84 0 0 chr1 127474875 127475173 -154718491 - AluSp SINE Alu -14 299 2 730 271 59 5 chr1 127478369 127478590 -154715074 + MIR SINE MIR 3 235 -27 201 219 0 0 chr1 127478563 127478595 -154715069 + L2 LINE L2 3254 3285 -28 * 252 59 0 0 chr1 127478619 127478653 -154715011 + (CAT)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr1 127479258 127479280 -154714384 + (T)n Simple_repeat Simple_repeat 1 22 0 2346 100 0 0 chr1 127479454 127479753 -154713911 + AluSx SINE Alu 1 299 -13 205 365 90 21 chr1 127479794 127479983 -154713681 + L2 LINE L2 2985 3186 -86 2898 6 0 0 chr1 127480402 127480714 -154712950 + AluYb8 SINE Alu 1 312 -6 15261 104 31 33 chr1 127481005 127483427 -154710237 + Tigger1 DNA MER2_type 2 2417 -1 180 152 0 0 chr1 127483676 127483709 -154709955 + (TA)n Simple_repeat Simple_repeat 2 34 0 568 319 36 20 chr1 127483936 127484355 -154709309 + L1ME LINE L1 4791 5224 -922 494 258 82 9 chr1 127484460 127484705 -154708959 + L1ME LINE L1 5371 5563 -607 577 193 118 8 chr1 127484714 127484833 -154708831 - FLAM_A SINE Alu -1 132 1 4251 165 43 32 chr1 127485038 127486026 -154707638 + L1MB7 LINE L1 5097 6073 -111 198 0 0 0 chr1 127486026 127486048 -154707616 + (TA)n Simple_repeat Simple_repeat 2 23 0 2332 77 3 0 chr1 127486053 127486340 -154707324 - AluSp SINE Alu -25 288 1 4251 165 43 32 chr1 127486340 127486393 -154707271 + L1MB7 LINE L1 6076 6165 -19 256 230 34 0 chr1 127486383 127486477 -154707187 + L1MD3 LINE L1 7520 7790 -198 * 30 59 0 0 chr1 127486801 127486852 -154706812 + AT_rich Low_complexity Low_complexity 1 51 0 229 182 36 18 chr1 127487782 127487837 -154705827 + MER5C DNA MER1_type 60 115 -209 * 680 219 85 6 chr1 127487833 127487997 -154705667 + MIR SINE MIR 86 262 0 255 211 105 0 chr1 127487997 127488054 -154705610 - L2 LINE L2 -271 3042 2980 207 194 0 0 chr1 127488331 127488367 -154705297 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1618 132 77 38 chr1 127488380 127488667 -154704997 + AluJb SINE Alu 1 298 -14 2214 114 7 10 chr1 127492567 127492875 -154700789 + AluSx SINE Alu 1 307 -5 546 285 52 17 chr1 127493428 127493600 -154700064 - MIR SINE MIR -38 224 47 57 75 0 0 chr1 127493723 127493843 -154699821 + AT_rich Low_complexity Low_complexity 1 120 0 34 0 0 0 chr1 127494519 127494553 -154699111 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr1 127494803 127494832 -154698832 + AT_rich Low_complexity Low_complexity 1 29 0 1794 101 0 0 chr1 127495697 127495934 -154697730 - AluSg SINE Alu -15 295 59 21 36 0 0 chr1 127496079 127496107 -154697557 + AT_rich Low_complexity Low_complexity 1 28 0 437 258 16 39 chr1 127496904 127497032 -154696632 - L2 LINE L2 0 3313 3189 318 152 279 0 chr1 127497262 127497341 -154696323 + MIR SINE MIR 161 261 -1 2183 116 7 10 chr1 127497493 127497795 -154695869 + AluSx SINE Alu 1 301 -11 30 45 0 0 chr1 127499208 127499252 -154694412 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr1 127499432 127499455 -154694209 + AT_rich Low_complexity Low_complexity 1 23 0 445 262 119 28 chr1 127500543 127500724 -154692940 - MIR SINE MIR -7 201 3 874 112 0 0 chr1 127500756 127500872 -154692792 + AluSg/x SINE Alu 185 300 -12 200 310 56 0 chr1 127501064 127501097 -154692567 - MIR3 SINE MIR -6 202 172 1922 121 0 4 chr1 127501097 127501362 -154692302 + AluSg SINE Alu 35 298 -12 200 310 56 0 chr1 127501362 127501399 -154692265 - MIR3 SINE MIR -36 172 128 22 0 0 0 chr1 127501662 127501684 -154691980 + AT_rich Low_complexity Low_complexity 1 22 0 2198 130 3 0 chr1 127503960 127504261 -154689403 + AluSx SINE Alu 1 302 -10 2317 63 0 11 chr1 127504703 127505028 -154688636 + AluSc SINE Alu 1 322 0 348 248 248 7 chr1 127505666 127505807 -154687857 - MIR SINE MIR -29 233 59 31 26 0 0 chr1 127507767 127507805 -154685859 + AT_rich Low_complexity Low_complexity 1 38 0 1294 164 33 47 chr1 127507831 127508106 -154685558 + MER31B LTR ERV1 1 271 -195 680 32 12 75 chr1 127508129 127508387 -154685277 + (TA)n Simple_repeat Simple_repeat 1 241 0 6172 101 6 1 chr1 127508391 127509249 -154684415 - L1PA8 LINE L1 -13 6159 5298 1596 122 99 27 chr1 127509304 127509416 -154684248 + AluSx SINE Alu 1 103 -213 2283 97 3 3 chr1 127509416 127509715 -154683949 + AluSq SINE Alu 1 299 -14 1596 122 99 27 chr1 127509715 127509899 -154683765 + AluSx SINE Alu 103 316 0 44483 35 2 5 chr1 127509903 127515723 -154677941 + L1PA3 LINE L1 7 5808 -347 2825 16 0 0 chr1 127515723 127516034 -154677630 + AluYa5 SINE Alu 1 311 0 44483 35 2 5 chr1 127516034 127516381 -154677283 + L1PA3 LINE L1 5808 6155 0 29 28 0 0 chr1 127517751 127517787 -154675877 + AT_rich Low_complexity Low_complexity 1 36 0 18577 152 51 38 chr1 127517864 127523067 -154670597 + L1MA3 LINE L1 4 5339 -2385 1649 118 22 0 chr1 127523067 127523327 -154670337 + AluSx SINE Alu 49 313 0 18577 152 51 38 chr1 127523327 127525495 -154668169 + L1MA3 LINE L1 5339 7477 -247 2519 41 0 7 chr1 127525495 127525787 -154667877 + AluY SINE Alu 1 290 -21 434 132 13 0 chr1 127525795 127525871 -154667793 + (TG)n Simple_repeat Simple_repeat 2 78 0 1499 118 12 20 chr1 127525881 127526127 -154667537 + L1MA2 LINE L1 6051 6294 -10 2065 138 59 150 chr1 127527157 127527803 -154665861 - L1MB8 LINE L1 0 6178 5592 320 312 83 0 chr1 127527823 127527980 -154665684 + L2 LINE L2 1819 1988 -1326 266 338 31 102 chr1 127527991 127528284 -154665380 + L2 LINE L2 2825 3096 -176 630 275 39 16 chr1 127528305 127528487 -154665177 - MIR SINE MIR 0 262 77 405 344 16 0 chr1 127528562 127528687 -154664977 + L2 LINE L2 3137 3263 -9 21 0 0 0 chr1 127529864 127529885 -154663779 + AT_rich Low_complexity Low_complexity 1 21 0 2161 114 0 7 chr1 127530480 127530786 -154662878 + AluSc SINE Alu 1 304 -5 1315 166 0 34 chr1 127530918 127531153 -154662511 - AluJb SINE Alu -1 311 85 28 0 0 0 chr1 127531208 127531236 -154662428 + AT_rich Low_complexity Low_complexity 1 28 0 2112 106 13 23 chr1 127532095 127532398 -154661266 + AluSx SINE Alu 1 300 -12 440 177 31 21 chr1 127532460 127532556 -154661108 + L1MA5A LINE L1 6196 6292 -5 23 0 0 0 chr1 127532662 127532685 -154660979 + AT_rich Low_complexity Low_complexity 1 23 0 211 288 0 15 chr1 127534264 127534330 -154659334 - MIR3 SINE MIR -7 201 137 188 35 35 0 chr1 127536639 127536668 -154656996 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 284 352 87 30 chr1 127536875 127537054 -154656610 - L2 LINE L2 -88 3184 3017 2149 78 0 0 chr1 127537054 127537311 -154656353 + AluSc SINE Alu 13 269 -40 306 0 0 0 chr1 127537313 127537347 -154656317 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 284 352 87 30 chr1 127537347 127537394 -154656270 - L2 LINE L2 -255 3017 2942 199 373 125 35 chr1 127537524 127537843 -154655821 - L2 LINE L2 -527 2787 2440 2173 120 3 3 chr1 127537897 127538198 -154655466 + AluSx SINE Alu 1 301 -11 1711 117 12 4 chr1 127538329 127538576 -154655088 - AluSc SINE Alu -8 301 53 291 328 208 24 chr1 127538586 127538995 -154654669 - L2 LINE L2 -781 2533 2050 895 65 0 0 chr1 127539025 127539165 -154654499 + AluY SINE Alu 175 314 0 488 252 81 0 chr1 127540341 127540464 -154653200 + MER94 DNA DNA 1 133 -1 197 128 0 26 chr1 127541032 127541071 -154652593 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 200 329 24 78 chr1 127541200 127541367 -154652297 - L2 LINE L2 -183 3089 2932 1070 262 116 10 chr1 127541738 127542135 -154651529 - Charlie7 DNA MER1_type -2124 488 50 271 295 36 0 chr1 127542312 127542424 -154651240 + L1MC4 LINE L1 7924 8039 -3 26 0 0 0 chr1 127542987 127543013 -154650651 + AT_rich Low_complexity Low_complexity 1 26 0 2069 126 0 3 chr1 127543017 127543310 -154650354 + AluSx SINE Alu 1 292 -20 1788 216 110 73 chr1 127543314 127543386 -154650278 - L1ME2 LINE L1 -8 6156 6088 2204 112 0 0 chr1 127543386 127543680 -154649984 + AluSg SINE Alu 1 294 -16 1788 216 110 73 chr1 127543680 127544280 -154649384 - L1ME2 LINE L1 -76 6088 5459 5384 111 27 62 chr1 127544295 127544688 -154648976 - L1MA4A LINE L1 -10 7009 6604 2457 94 0 0 chr1 127544688 127544996 -154648668 - AluSc SINE Alu 0 309 2 5384 111 27 62 chr1 127544996 127545691 -154647973 - L1MA4A LINE L1 -415 6604 5816 3196 193 30 98 chr1 127545693 127545904 -154647760 - L1MA4A LINE L1 -2421 4441 4217 243 0 0 0 chr1 127545904 127545931 -154647733 + (TTG)n Simple_repeat Simple_repeat 1 27 0 3196 193 30 98 chr1 127545931 127546343 -154647321 - L1MA4A LINE L1 -2645 4217 3915 1529 199 28 7 chr1 127546343 127546634 -154647030 - AluJb SINE Alu -15 297 1 3196 193 30 98 chr1 127546634 127547045 -154646619 - L1MA4A LINE L1 -2947 3915 3477 19609 31 1 1 chr1 127547051 127550186 -154643478 - L1PA3 LINE L1 -3 6152 3017 1135 14 14 0 chr1 127550186 127550324 -154643340 + L1PA3 LINE L1 2891 3030 -3116 * 3152 192 29 8 chr1 127550322 127551073 -154642591 - L1PBa LINE L1 -3371 3491 2708 2163 112 0 0 chr1 127551073 127551351 -154642313 - AluSg SINE Alu -31 279 2 3152 192 29 8 chr1 127551351 127551623 -154642041 - L1PBa LINE L1 -4154 2708 2443 455 180 173 14 chr1 127551636 127551793 -154641871 - L1M3 LINE L1 -692 5470 5319 * 4235 213 71 5 chr1 127551789 127553196 -154640468 - L1MB7 LINE L1 -1 6183 4676 1821 146 44 0 chr1 127553249 127553523 -154640141 - AluJb SINE Alu -26 286 1 323 245 58 26 chr1 127553536 127553691 -154639973 - L1MB7 LINE L1 -1647 4499 4340 870 206 0 13 chr1 127553975 127554130 -154639534 - FRAM SINE Alu -24 152 1 25 31 0 0 chr1 127554409 127554441 -154639223 + AT_rich Low_complexity Low_complexity 1 32 0 285 298 18 61 chr1 127555186 127555300 -154638364 - L2 LINE L2 -1 3312 3204 219 69 0 0 chr1 127555305 127555334 -154638330 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 1339 153 30 34 chr1 127555713 127555975 -154637689 - AluJo SINE Alu 0 310 50 2367 92 0 0 chr1 127556248 127556553 -154637111 - AluY SINE Alu -6 305 1 1343 186 14 4 chr1 127557075 127557350 -154636314 - L1M3 LINE L1 -876 5270 4993 23 54 0 0 chr1 127557352 127557389 -154636275 + AT_rich Low_complexity Low_complexity 1 37 0 908 257 72 8 chr1 127559089 127559326 -154634338 - MIR SINE MIR -9 253 2 21 36 0 0 chr1 127559350 127559378 -154634286 + AT_rich Low_complexity Low_complexity 1 28 0 3580 227 113 10 chr1 127559617 127560638 -154633026 + L2 LINE L2 883 2008 -1306 1156 254 78 85 chr1 127560638 127561354 -154632310 + L2 LINE L2 2619 3313 0 1967 139 7 0 chr1 127561788 127562102 -154631562 + AluSx SINE Alu 1 316 0 368 303 20 0 chr1 127562921 127563020 -154630644 - L2 LINE L2 -24 3289 3189 2003 149 17 3 chr1 127564020 127564321 -154629343 + AluSx SINE Alu 5 309 -3 1257 27 0 0 chr1 127565988 127566136 -154627528 + L1PA5 LINE L1 6005 6152 -2 24 0 0 0 chr1 127566136 127566160 -154627504 + AT_rich Low_complexity Low_complexity 1 24 0 230 214 14 14 chr1 127566389 127566459 -154627205 + (TA)n Simple_repeat Simple_repeat 2 71 0 671 276 127 33 chr1 127566794 127567207 -154626457 - L1ME1 LINE L1 -305 5861 5410 373 274 0 0 chr1 127567371 127567455 -154626209 + L2 LINE L2 3188 3271 -1 214 357 141 28 chr1 127567530 127567813 -154625851 - L2 LINE L2 -554 2760 2446 370 159 45 23 chr1 127568859 127568947 -154624717 - L1MA9 LINE L1 -5 6307 6218 28 61 0 0 chr1 127569036 127569085 -154624579 + AT_rich Low_complexity Low_complexity 1 49 0 429 306 145 44 chr1 127569428 127570052 -154623612 + L2 LINE L2 2367 3057 -215 244 353 0 20 chr1 127570072 127570174 -154623490 + L2 LINE L2 3213 3312 -1 21 71 0 0 chr1 127570512 127570554 -154623110 + AT_rich Low_complexity Low_complexity 1 42 0 1084 173 0 66 chr1 127570647 127570873 -154622791 + AluJo SINE Alu 87 297 -15 626 218 300 24 chr1 127570948 127571336 -154622328 + MLT1H1 LTR MaLR 47 545 -4 665 278 61 32 chr1 127571787 127572064 -154621600 + L2 LINE L2 1712 1996 -1318 266 243 18 90 chr1 127572084 127572195 -154621469 - L1ME3A LINE L1 -105 6065 5963 303 266 6 8 chr1 127572242 127572362 -154621302 - L1ME2 LINE L1 -202 5968 5845 262 285 32 16 chr1 127572542 127572665 -154620999 - L1ME1 LINE L1 -758 5404 5280 * 30643 106 11 21 chr1 127572662 127576059 -154617605 + L1PA8 LINE L1 1 3397 -3090 2464 68 0 0 chr1 127576059 127576351 -154617313 + AluYa5 SINE Alu 1 292 -19 30643 106 11 21 chr1 127576351 127579408 -154614256 + L1PA8 LINE L1 3397 6485 -2 597 199 48 18 chr1 127579452 127579618 -154614046 - MER104 DNA Tc2 -7 173 3 689 291 142 33 chr1 127580267 127581080 -154612584 - L1ME1 LINE L1 -918 5228 4328 735 149 144 53 chr1 127581137 127581325 -154612339 - L1ME1 LINE L1 -124 6042 5838 5504 214 86 15 chr1 127581332 127582881 -154610783 - L1 LINE L1 -1909 4237 2579 1250 195 43 4 chr1 127582892 127583169 -154610495 - L1ME1 LINE L1 -365 5801 5514 2757 202 55 3 chr1 127583175 127583778 -154609886 - MER99 DNA DNA -3 825 192 2327 84 0 0 chr1 127584134 127584459 -154609205 + AluSx SINE Alu 1 325 0 782 168 0 0 chr1 127584571 127584696 -154608968 - FLAM_C SINE Alu -8 125 1 475 247 122 98 chr1 127585150 127585405 -154608259 - LTR41 LTR ERVL -3 770 510 494 274 116 0 chr1 127585832 127585996 -154607668 - LTR41 LTR ERVL -588 185 3 1470 243 66 7 chr1 127585998 127586422 -154607242 - L1ME1 LINE L1 -2176 3970 3522 1821 86 63 0 chr1 127586426 127586695 -154606969 - L1PA11 LINE L1 0 6174 5889 11074 136 5 14 chr1 127586697 127586870 -154606794 - L1PA12 LINE L1 -1494 6090 5917 2194 83 17 3 chr1 127586870 127587160 -154606504 - AluY SINE Alu -17 294 1 11074 136 5 14 chr1 127587160 127588828 -154604836 - L1PA12 LINE L1 -1667 5917 4265 1213 138 11 0 chr1 127588830 127589061 -154604603 - AluSg/x SINE Alu 0 360 128 8037 214 31 36 chr1 127589061 127589413 -154604251 - L1PA12 LINE L1 -3308 4276 3924 2043 139 0 10 chr1 127589413 127589716 -154603948 + AluSx SINE Alu 1 300 -12 8037 214 31 36 chr1 127589716 127592231 -154601433 - L1PA12 LINE L1 -3660 3924 633 717 245 8 70 chr1 127592233 127592417 -154601247 - L1ME1 LINE L1 -2623 3523 3358 1680 176 0 29 chr1 127592417 127592730 -154600934 + AluJo SINE Alu 1 304 -8 717 245 8 70 chr1 127592730 127592802 -154600862 - L1ME1 LINE L1 -2788 3358 3283 820 130 8 8 chr1 127592808 127592931 -154600733 - FLAM_C SINE Alu -20 123 1 316 230 35 0 chr1 127592950 127593037 -154600627 - L1ME1 LINE L1 -2878 3268 3179 2347 84 0 3 chr1 127593225 127593523 -154600141 + AluY SINE Alu 1 297 -14 25 65 0 0 chr1 127594160 127594206 -154599458 + AT_rich Low_complexity Low_complexity 1 46 0 1697 279 73 38 chr1 127594884 127595668 -154597996 - L2 LINE L2 -314 2999 2182 2283 92 10 0 chr1 127596259 127596551 -154597113 + AluSx SINE Alu 1 295 -17 2311 60 3 24 chr1 127596551 127596849 -154596815 + AluY SINE Alu 1 292 -19 2226 96 0 3 chr1 127596919 127597210 -154596454 + AluSq SINE Alu 24 313 0 1602 132 0 4 chr1 127597413 127597641 -154596023 + AluSx SINE Alu 61 287 -25 519 329 96 52 chr1 127598498 127598905 -154594759 - L3 LINE CR1 -1038 539 115 1958 145 0 13 chr1 127600105 127600409 -154593255 - AluSx SINE Alu -12 300 1 31 58 0 0 chr1 127600906 127600958 -154592706 + AT_rich Low_complexity Low_complexity 1 52 0 897 231 33 0 chr1 127600966 127601148 -154592516 - MIR SINE MIR -58 204 17 198 103 0 0 chr1 127601179 127601208 -154592456 + (TC)n Simple_repeat Simple_repeat 2 30 0 1289 196 0 98 chr1 127601492 127601788 -154591876 + Tigger7 DNA MER2_type 1 267 -2220 609 126 0 48 chr1 127601786 127601889 -154591775 + Tigger7 DNA MER2_type 2394 2491 0 * 375 282 59 67 chr1 127601928 127602193 -154591471 - L2 LINE L2 -211 3061 2796 29 0 0 0 chr1 127602447 127602476 -154591188 + AT_rich Low_complexity Low_complexity 1 29 0 280 340 40 40 chr1 127603627 127603727 -154589937 + L2 LINE L2 3127 3226 -46 230 198 32 95 chr1 127603865 127603890 -154589774 + L1ME4a LINE L1 5806 5831 -290 1558 184 0 39 chr1 127603890 127604200 -154589464 + AluJb SINE Alu 1 298 -14 230 198 32 95 chr1 127604200 127604300 -154589364 + L1ME4a LINE L1 5831 5923 -198 1089 8 0 0 chr1 127604322 127604444 -154589220 + L1PA3 LINE L1 6030 6151 -4 2506 78 0 0 chr1 127604570 127604878 -154588786 - AluSc SINE Alu -1 308 1 248 191 73 0 chr1 127604905 127604973 -154588691 + L1ME4a LINE L1 6048 6120 -1 1047 271 93 69 chr1 127606130 127606555 -154587109 + L1MEc LINE L1 330 638 -5579 2390 89 0 0 chr1 127606555 127606857 -154586807 + AluSc SINE Alu 3 304 -5 1047 271 93 69 chr1 127606857 127607274 -154586390 + L1MEc LINE L1 638 1044 -5173 297 234 43 85 chr1 127607315 127607456 -154586208 + L1MEc LINE L1 35 169 -6227 618 249 46 85 chr1 127607496 127607668 -154585996 + L1MEc LINE L1 1277 1454 -4942 685 195 8 8 chr1 127607668 127607791 -154585873 + FLAM_A SINE Alu 1 123 -10 618 249 46 85 chr1 127607791 127608076 -154585588 + L1MEc LINE L1 1454 1716 -4680 1140 257 6 21 chr1 127608152 127608487 -154585177 + L1MEc LINE L1 2566 2895 -3320 1246 145 100 37 chr1 127608490 127608731 -154584933 + AluJo SINE Alu 51 306 -6 852 239 69 36 chr1 127608735 127609070 -154584594 + L1MEc LINE L1 2892 3237 -2978 21 0 0 0 chr1 127609451 127609472 -154584192 + AT_rich Low_complexity Low_complexity 1 21 0 260 286 156 47 chr1 127610281 127610473 -154583191 - L2 LINE L2 -565 2749 2537 25 0 0 0 chr1 127611157 127611182 -154582482 + AT_rich Low_complexity Low_complexity 1 25 0 392 324 39 67 chr1 127611249 127611579 -154582085 - L2 LINE L2 -783 2531 2211 357 336 2 7 chr1 127611582 127611719 -154581945 + L1MC/D LINE L1 5482 5618 -528 196 333 35 35 chr1 127612601 127612715 -154580949 - L2 LINE L2 -40 3273 3160 217 292 180 28 chr1 127612834 127613084 -154580580 - L2 LINE L2 -353 2961 2674 192 77 0 0 chr1 127613526 127613552 -154580112 + (A)n Simple_repeat Simple_repeat 1 26 0 2278 165 5 2 chr1 127613722 127614115 -154579549 - L1PA15 LINE L1 -3 6162 5769 204 200 0 0 chr1 127615574 127615614 -154578050 + C-rich Low_complexity Low_complexity 2 41 0 555 219 167 5 chr1 127615667 127615859 -154577805 + L1MC4a LINE L1 5319 5541 -2267 2023 230 58 32 chr1 127615862 127616366 -154577298 + MER97a DNA MER1_type? 1 517 -377 1961 149 16 3 chr1 127616379 127616687 -154576977 - AluJb SINE Alu 0 312 1 1672 104 52 4 chr1 127616710 127616980 -154576684 - L1PA15 LINE L1 -1 6164 5882 556 279 0 25 chr1 127617466 127617667 -154575997 + MER97c DNA MER1_type? 894 1089 -1 1728 207 17 8 chr1 127617730 127618092 -154575572 + MLT1A1 LTR MaLR 1 365 0 595 278 103 49 chr1 127618117 127618584 -154575080 + L1MC4a LINE L1 5978 6469 -1339 263 226 235 0 chr1 127618598 127618700 -154574964 + L1MC4 LINE L1 7102 7227 -815 748 282 87 47 chr1 127618825 127619470 -154574194 + L1MC5 LINE L1 7261 7931 -30 352 310 125 28 chr1 127619864 127620183 -154573481 + L2 LINE L2 2151 2500 -814 1154 229 12 12 chr1 127620224 127620473 -154573191 - MIR SINE MIR -10 252 4 654 335 79 49 chr1 127620480 127621043 -154572621 + L2 LINE L2 2499 3095 -177 2013 115 4 0 chr1 127621298 127621590 -154572074 - AluSc SINE Alu 0 305 13 25 0 0 0 chr1 127621692 127621717 -154571947 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr1 127621726 127621778 -154571886 + AT_rich Low_complexity Low_complexity 1 52 0 579 239 111 103 chr1 127621886 127622128 -154571536 + L1MC4 LINE L1 7524 7763 -279 2375 125 28 19 chr1 127622128 127622489 -154571175 - THE1B LTR MaLR 0 364 1 11493 95 13 0 chr1 127622489 127624049 -154569615 - THE1B-int LTR MaLR 0 1580 1 2155 128 70 14 chr1 127624049 127624394 -154569270 - THE1B LTR MaLR 0 364 1 579 239 111 103 chr1 127624394 127624646 -154569018 + L1MC4 LINE L1 7762 8024 -18 669 227 98 12 chr1 127624670 127624833 -154568831 - MIR SINE MIR -10 252 76 1929 155 10 0 chr1 127624920 127625217 -154568447 + AluSx SINE Alu 1 300 -12 2331 91 7 3 chr1 127625619 127625928 -154567736 + AluY SINE Alu 1 310 -1 2344 91 3 0 chr1 127625939 127626236 -154567428 + AluSx SINE Alu 1 298 -14 2011 149 10 0 chr1 127626424 127626726 -154566938 + AluSx SINE Alu 2 306 -6 21 0 0 0 chr1 127626743 127626764 -154566900 + AT_rich Low_complexity Low_complexity 1 21 0 388 329 58 7 chr1 127626895 127627032 -154566632 + L2 LINE L2 3162 3305 -8 22 35 0 0 chr1 127627123 127627152 -154566512 + AT_rich Low_complexity Low_complexity 1 29 0 2470 185 127 0 chr1 127627332 127627829 -154565835 + MER68 LTR ERV1 3 562 0 26 0 0 0 chr1 127628512 127628538 -154565126 + AT_rich Low_complexity Low_complexity 1 26 0 212 369 100 17 chr1 127629541 127629782 -154563882 - L2 LINE L2 -974 2340 2080 290 217 17 0 chr1 127629923 127629983 -154563681 + MER20 DNA MER1_type 7 67 -152 5104 137 92 98 chr1 127629992 127630581 -154563083 - L1MC3 LINE L1 -7 7778 7187 234 321 0 0 chr1 127630581 127630662 -154563002 - MLT1F1 LTR MaLR -446 121 41 5104 137 92 98 chr1 127630662 127631226 -154562438 - L1MC3 LINE L1 -598 7187 6552 664 176 73 15 chr1 127631271 127631407 -154562257 + MER20 DNA MER1_type 59 202 -17 701 272 45 49 chr1 127631600 127631843 -154561821 + MIR SINE MIR 11 252 -10 11822 28 3 1 chr1 127632535 127634709 -154558955 - L1PA3 LINE L1 0 6155 3980 1303 188 27 23 chr1 127635670 127635931 -154557733 + LTR10B LTR ERV1 286 547 0 186 103 0 0 chr1 127637944 127637973 -154555691 + (A)n Simple_repeat Simple_repeat 1 29 0 380 269 13 0 chr1 127639567 127639645 -154554019 - L2 LINE L2 0 3272 3194 3469 130 49 30 chr1 127640112 127640703 -154552961 + LTR36 LTR ERV1 10 611 0 312 244 56 0 chr1 127640703 127640793 -154552871 + MIR SINE MIR 166 260 -2 984 272 90 47 chr1 127641147 127641762 -154551902 + L2 LINE L2 2520 3148 -165 408 20 0 0 chr1 127641762 127641811 -154551853 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 222 365 35 9 chr1 127642056 127642171 -154551493 + L2 LINE L2 2179 2296 -1018 1017 281 77 21 chr1 127642485 127643117 -154550547 - L1MC/D LINE L1 -749 5397 5122 394 364 30 12 chr1 127643330 127643495 -154550169 - L3 LINE CR1 -7 1570 1403 513 92 0 0 chr1 127643990 127644066 -154549598 - AluSx SINE Alu -3 309 234 234 0 0 0 chr1 127644066 127644092 -154549572 + (T)n Simple_repeat Simple_repeat 1 26 0 29574 28 16 1 chr1 127644092 127650103 -154543561 - L1HS LINE L1 0 6155 22 1501 148 8 4 chr1 127650103 127650340 -154543324 - AluSx SINE Alu -66 246 9 1353 77 16 0 chr1 127651775 127651957 -154541707 + L1PB1 LINE L1 5967 6151 0 20419 177 35 15 chr1 127652808 127659119 -154534545 - L1PA13 LINE L1 -11 6803 330 22 80 0 0 chr1 127659650 127659700 -154533964 + AT_rich Low_complexity Low_complexity 1 50 0 872 78 78 0 chr1 127659781 127659909 -154533755 - MER85 DNA T2_type -1 138 1 813 174 19 32 chr1 127660313 127660468 -154533196 + AluJo SINE Alu 1 153 -159 * 1069 188 14 10 chr1 127660467 127660674 -154532990 + AluJo SINE Alu 95 302 -10 2628 97 3 3 chr1 127660842 127661212 -154532452 + L1PB1 LINE L1 5782 6151 0 396 217 108 59 chr1 127661475 127661548 -154532116 + L1MC4 LINE L1 7829 7897 -145 207 0 0 0 chr1 127661548 127661571 -154532093 + (CA)n Simple_repeat Simple_repeat 2 24 0 396 217 108 59 chr1 127661571 127661700 -154531964 + L1MC4 LINE L1 7897 8041 -1 1397 195 78 29 chr1 127661844 127662192 -154531472 - MLT1A1 LTR MaLR 0 365 1 1778 175 0 10 chr1 127662360 127662652 -154531012 + AluJb SINE Alu 5 293 -19 198 0 0 0 chr1 127662797 127662819 -154530845 + (A)n Simple_repeat Simple_repeat 1 22 0 1434 194 95 11 chr1 127662828 127663101 -154530563 + AluJo SINE Alu 1 296 -16 36 62 0 0 chr1 127663359 127663423 -154530241 + AT_rich Low_complexity Low_complexity 1 64 0 207 213 0 21 chr1 127663485 127663532 -154530132 + GA-rich Low_complexity Low_complexity 1 46 0 873 224 11 6 chr1 127663549 127663732 -154529932 + MLT1D LTR MaLR 322 505 0 1398 198 25 14 chr1 127664621 127664904 -154528760 + L1MA4 LINE L1 3 288 -6742 2836 212 26 17 chr1 127664908 127666066 -154527598 + L1MA4 LINE L1 1568 2720 -4387 37512 84 12 8 chr1 127666072 127672202 -154521462 + L1PA6 LINE L1 3 6152 -2 1775 220 55 62 chr1 127672206 127672705 -154520959 + L1MA9 LINE L1 2840 3341 -4224 225 0 0 0 chr1 127672705 127672730 -154520934 + (CA)n Simple_repeat Simple_repeat 2 26 0 1775 220 55 62 chr1 127672730 127672771 -154520893 + L1MA9 LINE L1 3341 3381 -4184 267 31 0 0 chr1 127672771 127672803 -154520861 + (CA)n Simple_repeat Simple_repeat 2 33 0 1775 220 55 62 chr1 127672803 127673045 -154520619 + L1MA9 LINE L1 3381 3623 -3942 1938 33 0 0 chr1 127673045 127673260 -154520404 + AluY SINE Alu 83 297 -14 1775 220 55 62 chr1 127673260 127673585 -154520079 + L1MA9 LINE L1 3623 3951 -3614 2113 140 45 6 chr1 127673586 127673944 -154519720 + Tigger3b DNA MER2_type 2 373 -858 1781 200 37 7 chr1 127673950 127674355 -154519309 - L1 LINE L1 -3112 3034 2618 884 205 39 5 chr1 127674353 127674558 -154519106 + L1MA9 LINE L1 6372 6583 -982 * 1898 166 35 25 chr1 127674557 127674954 -154518710 + L1MA9 LINE L1 7205 7605 -126 518 196 90 130 chr1 127674954 127675255 -154518409 + MLT1J LTR MaLR 117 405 -106 534 269 88 18 chr1 127676154 127676325 -154517339 + MIR SINE MIR 7 189 -73 194 316 200 0 chr1 127676500 127676595 -154517069 - L2 LINE L2 -2 3311 3198 972 151 114 52 chr1 127676604 127676876 -154516788 - MER3 DNA MER1_type 0 2623 2335 403 176 59 0 chr1 127676925 127677010 -154516654 - MER3 DNA MER1_type 0 209 120 15337 172 34 7 chr1 127677022 127677630 -154516034 + L1MA4 LINE L1 2856 3446 -3814 1767 189 0 7 chr1 127677630 127677927 -154515737 + AluJo SINE Alu 1 295 -17 15337 172 34 7 chr1 127677927 127681601 -154512063 + L1MA4 LINE L1 3446 7260 0 1317 286 117 13 chr1 127681777 127682315 -154511349 + L2 LINE L2 1747 2340 -974 3341 176 79 25 chr1 127682316 127682746 -154510918 + Looper DNA T2_type 1 406 -1152 9925 171 14 9 chr1 127682746 127684635 -154509029 - L1PA14 LINE L1 -3 6158 4240 2507 76 0 0 chr1 127684635 127684937 -154508727 - AluY SINE Alu -9 302 1 9925 171 14 9 chr1 127684937 127685687 -154507977 - L1PA14 LINE L1 -1921 4240 3495 3341 176 79 25 chr1 127685687 127686615 -154507049 + Looper DNA T2_type 406 1486 -72 1423 163 0 131 chr1 127686615 127686959 -154506705 + AluJo SINE Alu 4 302 0 3341 176 79 25 chr1 127686959 127687037 -154506627 + Looper DNA T2_type 1486 1558 0 828 316 142 25 chr1 127687037 127687884 -154505780 + L2 LINE L2 2338 3289 -24 268 262 215 13 chr1 127688764 127689001 -154504663 - L1M4 LINE L1 -2192 3954 3670 2448 64 0 46 chr1 127689200 127689526 -154504138 + AluY SINE Alu 1 311 0 453 325 121 64 chr1 127689556 127690081 -154503583 - L2 LINE L2 -2 3270 2715 787 178 56 86 chr1 127690603 127690696 -154502968 - MIR SINE MIR -1 261 167 2143 52 4 7 chr1 127690696 127690967 -154502697 + L1PA7 LINE L1 5882 6151 -3 787 178 56 86 chr1 127690967 127691070 -154502594 - MIR SINE MIR -95 167 71 236 216 0 39 chr1 127691564 127691615 -154502049 + MIR SINE MIR 2 50 -212 25 0 0 0 chr1 127691946 127691971 -154501693 + AT_rich Low_complexity Low_complexity 1 25 0 321 26 0 0 chr1 127692975 127693013 -154500651 + (TG)n Simple_repeat Simple_repeat 2 39 0 263 239 14 0 chr1 127694982 127695053 -154498611 + (CCA)n Simple_repeat Simple_repeat 1 72 0 261 0 0 0 chr1 127695984 127696013 -154497651 + (CA)n Simple_repeat Simple_repeat 1 29 0 2197 107 13 0 chr1 127696238 127696536 -154497128 - AluSp SINE Alu -11 302 1 692 109 118 42 chr1 127696590 127696709 -154496955 + FLAM_C SINE Alu 1 128 -5 548 170 123 0 chr1 127697401 127697507 -154496157 + L1MB7 LINE L1 5969 6087 -97 2199 112 0 3 chr1 127697507 127697802 -154495862 - AluSx SINE Alu -18 294 1 1360 216 109 17 chr1 127697839 127698196 -154495468 + MSTD LTR MaLR 1 390 -6 1592 188 39 3 chr1 127698202 127698538 -154495126 - L1MB3 LINE L1 -11 6172 5825 14768 135 29 11 chr1 127698538 127699762 -154493902 - L1M4 LINE L1 -3704 2678 1477 1284 199 48 62 chr1 127699762 127700054 -154493610 - AluJo SINE Alu -24 288 1 14768 135 29 11 chr1 127700054 127701444 -154492220 - L1M4 LINE L1 -4905 1477 17 546 152 0 0 chr1 127701444 127701536 -154492128 + L1MB7 LINE L1 6074 6165 -19 25 31 0 0 chr1 127702203 127702235 -154491429 + AT_rich Low_complexity Low_complexity 1 32 0 427 102 0 0 chr1 127702619 127702678 -154490986 + FRAM/FAM SINE Alu 20 78 -98 193 56 28 28 chr1 127702679 127702715 -154490949 + (TA)n Simple_repeat Simple_repeat 1 36 0 237 179 64 26 chr1 127702751 127702829 -154490835 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 181 255 78 0 chr1 127704787 127704838 -154488826 - L2 LINE L2 -657 2657 2603 225 226 43 97 chr1 127705013 127705106 -154488558 + MLT1L LTR MaLR 508 595 -20 591 294 51 21 chr1 127705156 127705391 -154488273 - MIR SINE MIR -4 258 17 329 258 174 30 chr1 127705433 127705565 -154488099 + MIR SINE MIR 1 151 -111 246 277 161 96 chr1 127705773 127706022 -154487642 - L2 LINE L2 -98 3174 2910 3089 173 30 4 chr1 127706027 127706552 -154487112 + MER44D DNA MER2_type 1 539 -166 1736 165 201 6 chr1 127706552 127706910 -154486754 + MSTB1 LTR MaLR 1 428 -4 1412 131 0 0 chr1 127706914 127707113 -154486551 + MER44D DNA MER2_type 535 605 0 316 182 0 18 chr1 127707183 127707238 -154486426 + FLAM SINE Alu 61 114 -19 722 153 0 8 chr1 127707281 127707399 -154486265 + FLAM_A SINE Alu 1 117 -16 1188 119 7 20 chr1 127707407 127707698 -154485966 + (GAA)n Simple_repeat Simple_repeat 2 288 0 36 23 0 0 chr1 127708141 127708184 -154485480 + AT_rich Low_complexity Low_complexity 1 43 0 2374 80 0 3 chr1 127708260 127708562 -154485102 + AluY SINE Alu 1 301 -10 216 353 0 0 chr1 127710129 127710180 -154483484 - L2 LINE L2 -12 3260 3210 352 202 183 39 chr1 127710534 127710638 -154483026 + L2 LINE L2 3186 3304 -9 269 278 14 14 chr1 127710855 127710927 -154482737 - L2 LINE L2 -5 3308 3237 826 151 0 0 chr1 127710967 127711086 -154482578 - FLAM_C SINE Alu -24 119 1 496 231 129 20 chr1 127711086 127711233 -154482431 - MLT1H LTR MaLR -2 547 385 420 136 0 25 chr1 127711274 127711355 -154482309 - LTR41 LTR ERVL -694 79 1 352 242 40 16 chr1 127712192 127712316 -154481348 + L1ME LINE L1 5339 5465 -699 769 164 33 0 chr1 127712350 127712472 -154481192 - FLAM_C SINE Alu -16 127 2 293 243 126 19 chr1 127712738 127712841 -154480823 + FLAM_A SINE Alu 20 133 0 769 220 163 18 chr1 127712932 127713159 -154480505 + MIR SINE MIR 3 262 0 568 298 102 23 chr1 127713160 127713991 -154479673 - L1 LINE L1 -1135 5011 4124 943 213 0 16 chr1 127714071 127714254 -154479410 - AluJo SINE Alu -45 267 88 279 292 46 0 chr1 127715047 127715112 -154478552 - L2 LINE L2 -1 3271 3204 4280 106 19 5 chr1 127715468 127716093 -154477571 + MER51A LTR ERV1 1 634 0 431 247 129 17 chr1 127716178 127716356 -154477308 + L1M4 LINE L1 4621 4818 -1328 613 191 24 16 chr1 127716356 127716482 -154477182 + Charlie5 DNA MER1_type 1 127 -2485 * 1543 180 42 37 chr1 127716479 127716862 -154476802 + Charlie5 DNA MER1_type 2234 2618 0 889 257 70 33 chr1 127716902 127717299 -154476365 + L1M4 LINE L1 4813 5224 -922 28 0 0 0 chr1 127717586 127717614 -154476050 + AT_rich Low_complexity Low_complexity 1 28 0 1853 235 95 27 chr1 127717622 127718336 -154475328 + L1MDb LINE L1 7 884 -5525 228 236 0 56 chr1 127718345 127718434 -154475230 + (TA)n Simple_repeat Simple_repeat 2 85 0 2564 235 34 10 chr1 127718434 127719171 -154474493 + L1MDb LINE L1 2349 3105 -3301 472 195 35 95 chr1 127719283 127719369 -154474295 + L1MDb LINE L1 3756 3829 -2577 2246 78 0 78 chr1 127719369 127719690 -154473974 - AluSq SINE Alu -15 298 3 472 195 35 95 chr1 127719690 127719772 -154473892 + L1MDb LINE L1 3829 3914 -2492 1785 152 87 117 chr1 127719776 127720271 -154473393 + L1MD2 LINE L1 5664 6143 -216 2451 191 167 147 chr1 127720271 127720973 -154472691 + MER52A LTR ERV1 1 687 -1068 2308 91 0 0 chr1 127720973 127721271 -154472393 + AluY SINE Alu 1 298 -13 2451 191 167 147 chr1 127721271 127722226 -154471438 + MER52A LTR ERV1 687 1755 0 940 169 61 19 chr1 127722227 127722440 -154471224 + L1MD2 LINE L1 6137 6358 -1 781 241 70 27 chr1 127724270 127724527 -154469137 - L3 LINE CR1 -3 1574 1307 1794 151 104 0 chr1 127724529 127724846 -154468818 + MLT1D LTR MaLR 153 502 -3 323 264 200 13 chr1 127726682 127726837 -154466827 - L2 LINE L2 -7 3306 3123 642 128 0 0 chr1 127727030 127727124 -154466540 + FRAM SINE Alu 65 158 -18 586 228 31 18 chr1 127727280 127727450 -154466214 + L1ME1 LINE L1 6006 6184 0 27 62 0 0 chr1 127727476 127727524 -154466140 + AT_rich Low_complexity Low_complexity 1 48 0 393 214 0 36 chr1 127727739 127727907 -154465757 + (TTAA)n Simple_repeat Simple_repeat 4 165 0 32 57 0 0 chr1 127729108 127729161 -154464503 + AT_rich Low_complexity Low_complexity 1 53 0 15681 61 2 4 chr1 127729197 127732016 -154461648 + L1PA6 LINE L1 3331 6153 -1 23 0 0 0 chr1 127733013 127733036 -154460628 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chr1 127733174 127733221 -154460443 + AT_rich Low_complexity Low_complexity 1 47 0 1413 190 9 0 chr1 127734032 127734264 -154459400 - AluJb SINE Alu -78 234 1 22 0 0 0 chr1 127734671 127734693 -154458971 + AT_rich Low_complexity Low_complexity 1 22 0 373 299 62 0 chr1 127735883 127735980 -154457684 + MIR SINE MIR 43 145 -63 785 307 160 20 chr1 127736160 127736776 -154456888 + L2 LINE L2 2361 3068 -245 574 189 61 53 chr1 127736863 127736995 -154456669 - FLAM_A SINE Alu 0 133 1 2020 145 0 28 chr1 127737152 127737470 -154456194 - AluJo SINE Alu -3 309 1 1788 141 33 16 chr1 127738124 127738429 -154455235 - AluJb SINE Alu -2 310 1 22 56 0 0 chr1 127738628 127738664 -154455000 + AT_rich Low_complexity Low_complexity 1 36 0 1186 192 134 0 chr1 127739006 127739297 -154454367 + MER63 DNA MER1_type 718 1047 -13 634 200 139 0 chr1 127740032 127740197 -154453467 - MER63 DNA MER1_type 0 1060 873 183 274 39 39 chr1 127741518 127741569 -154452095 + MIR SINE MIR 35 85 -177 276 222 123 0 chr1 127742463 127742544 -154451120 + MIR SINE MIR 81 171 -91 30 27 0 0 chr1 127743911 127743948 -154449716 + AT_rich Low_complexity Low_complexity 1 37 0 25 75 0 0 chr1 127743992 127744045 -154449619 + AT_rich Low_complexity Low_complexity 1 53 0 527 283 179 47 chr1 127744288 127744691 -154448973 + MLT1K LTR MaLR 133 588 0 331 271 82 25 chr1 127746815 127746937 -154446727 + L2 LINE L2 3144 3272 0 288 0 0 0 chr1 127747307 127747339 -154446325 + (CA)n Simple_repeat Simple_repeat 1 32 0 299 213 13 0 chr1 127747937 127748012 -154445652 + (TA)n Simple_repeat Simple_repeat 1 76 0 261 0 0 0 chr1 127748510 127748539 -154445125 + (A)n Simple_repeat Simple_repeat 1 29 0 331 320 77 77 chr1 127752315 127752846 -154440818 + L1M2 LINE L1 551 1081 -5768 229 290 0 0 chr1 127753458 127753527 -154440137 + C-rich Low_complexity Low_complexity 4 72 0 21 0 0 0 chr1 127753527 127753548 -154440116 + GC_rich Low_complexity Low_complexity 1 21 0 184 194 28 0 chr1 127754051 127754087 -154439577 - L2 LINE L2 0 3313 3277 268 261 18 0 chr1 127754144 127754222 -154439442 + MIR SINE MIR 80 161 -47 395 274 47 0 chr1 127754312 127754418 -154439246 - L2 LINE L2 -38 3234 3124 269 215 63 13 chr1 127754460 127754539 -154439125 + MIR SINE MIR 18 100 -162 273 296 111 37 chr1 127754629 127754791 -154438873 + L2 LINE L2 2914 3087 -185 281 135 469 0 chr1 127754939 127755035 -154438629 - LTR33 LTR ERVL 0 521 381 631 251 65 10 chr1 127755091 127755290 -154438374 - LTR33 LTR ERVL -240 281 72 916 291 69 14 chr1 127755497 127756029 -154437635 - MLT1L LTR MaLR 0 615 1 200 241 222 0 chr1 127756076 127756130 -154437534 + MIR SINE MIR 13 78 -184 583 235 45 8 chr1 127756131 127756263 -154437401 + MIR SINE MIR 55 191 -71 199 289 0 0 chr1 127756672 127756717 -154436947 + MIR3 SINE MIR 139 183 -25 2597 122 54 15 chr1 127756762 127757172 -154436492 - MSTB LTR MaLR 0 426 1 751 267 65 43 chr1 127757208 127757579 -154436085 - MLT1L LTR MaLR -235 380 2 2107 125 0 0 chr1 127757695 127757983 -154435681 + AluSx SINE Alu 1 288 -24 2295 111 0 0 chr1 127758791 127759088 -154434576 + AluSx SINE Alu 1 297 -15 214 291 47 0 chr1 127759284 127759370 -154434294 + L2 LINE L2 3160 3249 -64 182 227 240 27 chr1 127759418 127759493 -154434171 - L2 LINE L2 -68 3245 3155 2836 3 0 0 chr1 127759500 127759805 -154433859 + AluY SINE Alu 1 305 -6 1786 126 0 4 chr1 127759849 127760103 -154433561 + AluJb SINE Alu 46 298 -14 807 291 125 25 chr1 127760196 127760675 -154432989 - L2 LINE L2 -246 3067 2545 2158 134 3 8 chr1 127761409 127761767 -154431897 + MER47A DNA MER2_type 11 366 0 3814 117 45 29 chr1 127761833 127761968 -154431696 + L1MA7 LINE L1 5351 5482 -809 2040 150 3 13 chr1 127761968 127762281 -154431383 + AluJb SINE Alu 1 310 -2 3814 117 45 29 chr1 127762281 127762571 -154431093 + L1MA7 LINE L1 5482 5794 -497 387 0 0 0 chr1 127762571 127762614 -154431050 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 3814 117 45 29 chr1 127762614 127762873 -154430791 + L1MA7 LINE L1 5794 6047 -244 475 84 0 219 chr1 127762876 127763031 -154430633 + L1MA7 LINE L1 6159 6279 -12 1294 209 115 12 chr1 127763381 127763720 -154429944 + MLT1A2 LTR MaLR 1 374 0 1276 247 61 68 chr1 127763722 127764360 -154429304 + L2 LINE L2 2681 3301 -12 2203 213 62 34 chr1 127764663 127765047 -154428617 + L1ME3 LINE L1 5457 5870 -292 1716 160 4 4 chr1 127765047 127765322 -154428342 + AluJb SINE Alu 28 302 -10 2203 213 62 34 chr1 127765322 127765610 -154428054 + L1ME3 LINE L1 5870 6148 -14 427 259 208 38 chr1 127766092 127766304 -154427360 + L1ME LINE L1 5256 5503 -2305 248 219 31 0 chr1 127766443 127766507 -154427157 + L1ME LINE L1 5744 5809 -312 311 283 90 7 chr1 127768579 127768724 -154424940 - L1MC5 LINE L1 -32 7929 7773 444 213 29 37 chr1 127768754 127768890 -154424774 - L1MC4 LINE L1 -1137 6905 6771 481 220 42 0 chr1 127769303 127769421 -154424243 + MLT1B LTR MaLR 268 390 0 639 297 23 27 chr1 127769466 127769702 -154423962 - MIR SINE MIR -21 241 15 188 0 74 0 chr1 127769796 127769823 -154423841 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 240 367 72 29 chr1 127769924 127770063 -154423601 + L2 LINE L2 3127 3271 -1 1796 177 17 3 chr1 127770425 127770719 -154422945 - AluJo SINE Alu -14 298 1 210 105 0 0 chr1 127771022 127771060 -154422604 + (A)n Simple_repeat Simple_repeat 1 38 0 385 309 92 49 chr1 127771769 127772073 -154421591 + L2 LINE L2 2328 2644 -670 2197 116 0 0 chr1 127772237 127772531 -154421133 - AluSq SINE Alu -19 294 1 579 243 16 54 chr1 127772873 127773058 -154420606 + MIR SINE MIR 84 261 -1 196 275 38 53 chr1 127773194 127773325 -154420339 - L2 LINE L2 -880 2434 2306 1216 281 81 15 chr1 127773339 127773819 -154419845 + LTR33 LTR ERVL 10 521 0 261 305 152 7 chr1 127773834 127773985 -154419679 - L2 LINE L2 -1021 2293 2121 22 56 0 0 chr1 127774240 127774276 -154419388 + AT_rich Low_complexity Low_complexity 1 36 0 186 43 0 0 chr1 127774298 127774321 -154419343 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 6547 110 28 2 chr1 127774421 127775460 -154418204 - Tigger1 DNA MER2_type 0 2418 1353 6339 129 50 18 chr1 127775470 127776597 -154417067 - Tigger1 DNA MER2_type -1255 1163 1 584 223 84 0 chr1 127776600 127776815 -154416849 - L1MC4a LINE L1 -1815 5993 5761 877 301 127 35 chr1 127776873 127777565 -154416099 + L2 LINE L2 1317 2072 -1242 807 193 80 9 chr1 127777611 127777823 -154415841 - MER96B DNA MER1_type? -1 416 190 21 0 0 0 chr1 127777985 127778006 -154415658 + AT_rich Low_complexity Low_complexity 1 21 0 1995 138 0 0 chr1 127778027 127778354 -154415310 - AluSx SINE Alu 0 327 1 887 313 173 26 chr1 127779052 127779770 -154413894 + L2 LINE L2 2075 2897 -417 306 308 175 21 chr1 127779791 127779934 -154413730 + L2 LINE L2 3095 3259 -13 728 277 36 28 chr1 127780028 127780277 -154413387 - MIR SINE MIR -10 252 2 265 146 125 0 chr1 127780277 127780303 -154413361 - L2 LINE L2 -27 3245 3214 476 331 51 20 chr1 127780368 127780585 -154413079 - MIR SINE MIR -38 224 3 180 273 0 36 chr1 127780632 127780687 -154412977 + MER5B DNA MER1_type 4 56 -122 * 296 164 18 18 chr1 127780644 127780699 -154412965 - MER5A DNA MER1_type -13 176 122 1464 109 9 9 chr1 127780705 127780935 -154412729 - MER9 LTR ERVK -10 501 272 261 75 0 0 chr1 127780958 127780998 -154412666 + (T)n Simple_repeat Simple_repeat 1 40 0 13741 19 0 0 chr1 127780999 127783285 -154410379 - L1PA2 LINE L1 -3 6152 3791 8726 30 0 0 chr1 127783285 127784401 -154409263 + L1PA2 LINE L1 2649 3764 -2382 1621 119 0 0 chr1 127784401 127784644 -154409020 - MER9 LTR ERVK -268 243 1 223 268 110 24 chr1 127784646 127784728 -154408936 - MER5A DNA MER1_type -57 132 44 561 238 146 12 chr1 127784756 127784920 -154408744 - MER5A DNA MER1_type -3 186 1 2307 115 0 3 chr1 127785140 127785454 -154408210 - AluSq SINE Alu 0 313 1 282 179 0 0 chr1 127785454 127785510 -154408154 - Alu SINE Alu -2 300 245 1570 210 7 3 chr1 127785510 127785668 -154407996 - AluJo SINE Alu -21 291 130 185 0 40 0 chr1 127785668 127785693 -154407971 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1570 210 7 3 chr1 127785693 127785824 -154407840 - AluJo SINE Alu -182 130 1 222 62 0 0 chr1 127786285 127786317 -154407347 + (TG)n Simple_repeat Simple_repeat 2 33 0 834 219 127 0 chr1 127787134 127787339 -154406325 + MIR SINE MIR 13 243 -19 209 346 39 65 chr1 127787954 127788263 -154405401 + L2 LINE L2 2458 2758 -556 1457 161 3 112 chr1 127788452 127788775 -154404889 + AluJo SINE Alu 1 288 -24 234 0 0 0 chr1 127788782 127788808 -154404856 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1960 147 10 3 chr1 127788843 127789149 -154404515 - AluJb SINE Alu -4 308 1 307 183 33 0 chr1 127790035 127790095 -154403569 + MLT1F1 LTR MaLR 73 134 -433 3143 141 19 2 chr1 127790100 127790669 -154402995 + L1MD3 LINE L1 7417 7995 0 1191 178 81 34 chr1 127791335 127791656 -154402008 - MER44D DNA MER2_type -3 606 1 294 344 11 0 chr1 127792849 127792939 -154400725 + L2 LINE L2 3146 3236 -36 2509 52 3 13 chr1 127794058 127794367 -154399297 + AluY SINE Alu 1 306 -5 216 350 59 59 chr1 127794367 127794621 -154399043 + L2 LINE L2 2606 2859 -455 383 251 129 12 chr1 127794695 127794858 -154398806 - MIR SINE MIR -31 231 50 834 69 0 0 chr1 127794859 127794961 -154398703 - AluSg/x SINE Alu -76 236 135 450 0 0 0 chr1 127795298 127795348 -154398316 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 296 291 0 13 chr1 127795678 127795757 -154397907 - MIR SINE MIR -184 78 1 1732 158 10 39 chr1 127796118 127796428 -154397236 + AluJo SINE Alu 1 301 -11 2014 105 62 0 chr1 127796480 127796756 -154396908 + AluSg SINE Alu 11 303 -7 233 319 92 14 chr1 127796904 127797045 -154396619 + L2 LINE L2 2804 2955 -317 7240 40 11 0 chr1 127797060 127798081 -154395583 - L1PA4 LINE L1 0 6155 5128 26539 32 1 2 chr1 127798083 127802266 -154391398 - L1HS LINE L1 0 6155 1979 373 375 52 48 chr1 127802270 127802539 -154391125 + L2 LINE L2 2977 3246 -26 4143 170 50 14 chr1 127803571 127804440 -154389224 - L1MB2 LINE L1 -36 6135 5236 298 146 0 0 chr1 127804441 127804496 -154389168 - AluSx SINE Alu -3 299 245 322 253 0 13 chr1 127804535 127804610 -154389054 - L2 LINE L2 -4 3268 3195 444 37 0 0 chr1 127804613 127804667 -154388997 + (CA)n Simple_repeat Simple_repeat 2 55 0 2282 99 3 13 chr1 127805626 127805928 -154387736 + AluSp SINE Alu 1 299 -14 15330 122 17 13 chr1 127806114 127807715 -154385949 + Tigger1 DNA MER2_type 1 1617 -801 2315 83 10 0 chr1 127807715 127808015 -154385649 + AluSp SINE Alu 2 304 -9 15330 122 17 13 chr1 127808015 127808821 -154384843 + Tigger1 DNA MER2_type 1617 2418 0 403 266 39 0 chr1 127808858 127808986 -154384678 - L1ME LINE L1 -298 5823 5691 276 311 66 93 chr1 127810588 127810922 -154382742 - L2 LINE L2 0 3272 2948 403 285 134 11 chr1 127811064 127811250 -154382414 - MIR SINE MIR -34 228 20 1923 122 4 4 chr1 127811436 127811706 -154381958 - AluSx SINE Alu -42 270 1 233 250 0 56 chr1 127811729 127811801 -154381863 + L2 LINE L2 3193 3260 -12 263 309 12 12 chr1 127811809 127811890 -154381774 + MIR SINE MIR 21 101 -107 436 228 171 6 chr1 127811898 127812056 -154381608 + MIR SINE MIR 79 262 0 1049 218 110 25 chr1 127812388 127812550 -154381114 - MER2 DNA MER2_type -1 344 197 1858 167 0 17 chr1 127812550 127812862 -154380802 - AluJb SINE Alu 0 307 1 1049 218 110 25 chr1 127812862 127813015 -154380649 - MER2 DNA MER2_type -148 197 1 600 254 35 23 chr1 127813974 127814147 -154379517 + MER45A DNA AcHobo 1 175 -3 554 178 59 8 chr1 127814607 127814725 -154378939 - MER89 LTR ERV1 -4 555 432 13869 143 25 4 chr1 127814725 127817020 -154376644 + L1M1 LINE L1 18 2359 -5206 405 302 47 41 chr1 127817157 127817329 -154376335 + MIR SINE MIR 45 217 -45 204 328 96 35 chr1 127817360 127817589 -154376075 - L2 LINE L2 -202 3070 2828 417 301 77 27 chr1 127818172 127818577 -154375087 - L1ME4a LINE L1 -193 5928 5504 733 118 29 191 chr1 127818661 127818865 -154374799 + AluJ SINE Alu 1 171 -141 509 162 40 10 chr1 127818938 127819037 -154374627 + AluJ SINE Alu 167 268 -44 408 252 0 0 chr1 127819318 127819437 -154374227 - L1ME LINE L1 -313 5808 5690 304 318 152 15 chr1 127819485 127819617 -154374047 - L1ME LINE L1 -2223 5585 5436 2225 113 0 0 chr1 127819618 127819918 -154373746 + AluSx SINE Alu 1 300 -12 641 216 29 41 chr1 127819933 127820104 -154373560 - L2 LINE L2 -3 3310 3142 803 277 21 68 chr1 127820109 127820448 -154373216 - LTR67 LTR ERVL -234 323 1 258 339 18 9 chr1 127820673 127820785 -154372879 + L3 LINE CR1 1211 1323 -254 1222 311 72 23 chr1 127820791 127821509 -154372155 - L2 LINE L2 -2 3311 2568 323 307 64 21 chr1 127821475 127821615 -154372049 + L3 LINE CR1 1307 1452 -125 * 1002 222 82 0 chr1 127821630 127821837 -154371827 + MER58A DNA MER1_type 1 224 0 249 98 0 0 chr1 127822891 127822932 -154370732 + (CA)n Simple_repeat Simple_repeat 2 42 0 233 303 0 30 chr1 127823533 127823599 -154370065 + MIR SINE MIR 85 148 -114 1512 103 17 0 chr1 127823611 127823844 -154369820 - L1MA3 LINE L1 -242 6063 5827 208 164 30 0 chr1 127823866 127823933 -154369731 + (TA)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr1 127824153 127824174 -154369490 + AT_rich Low_complexity Low_complexity 1 21 0 3279 108 23 2 chr1 127824174 127824702 -154368962 - L1MA3 LINE L1 0 6305 5767 * 7020 50 11 0 chr1 127824692 127826239 -154367425 - L1PA6 LINE L1 -5 6149 4603 2763 114 6 29 chr1 127826248 127826730 -154366934 - L1MA3 LINE L1 -531 5774 5304 1326 108 0 0 chr1 127826732 127826908 -154366756 + AluSc SINE Alu 126 301 -8 562 258 21 11 chr1 127826922 127827108 -154366556 - L1ME LINE L1 -368 5802 5615 1272 107 5 0 chr1 127827266 127827471 -154366193 - L1MA3 LINE L1 0 6305 6100 5309 148 23 8 chr1 127827485 127828536 -154365128 - L1 LINE L1 -830 6735 5669 21138 130 20 52 chr1 127828537 127829518 -154364146 - L1 LINE L1 -3441 4124 3113 2188 138 3 0 chr1 127829518 127829822 -154363842 - AluSq SINE Alu -8 305 1 21138 130 20 52 chr1 127829822 127829894 -154363770 - L1 LINE L1 -4452 3113 3040 2206 121 0 19 chr1 127829894 127830208 -154363456 - AluSg SINE Alu -2 308 1 21138 130 20 52 chr1 127830208 127832007 -154361657 - L1 LINE L1 -4525 3040 1426 2276 99 0 0 chr1 127832007 127832299 -154361365 - AluSx SINE Alu -2 310 19 21138 130 20 52 chr1 127832299 127833666 -154359998 - L1 LINE L1 -6139 1426 16 1963 132 27 0 chr1 127834269 127834564 -154359100 + AluSx SINE Alu 1 303 -9 56 55 0 0 chr1 127834867 127834958 -154358706 + AT_rich Low_complexity Low_complexity 1 91 0 228 35 0 0 chr1 127835184 127835213 -154358451 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 297 0 0 0 chr1 127835212 127835245 -154358419 + (CA)n Simple_repeat Simple_repeat 1 33 0 1543 178 46 9 chr1 127836438 127836764 -154356900 + MER44D DNA MER2_type 1 608 -1 3774 25 0 2 chr1 127838532 127839000 -154354664 + L1PA4 LINE L1 5704 6170 0 2800 151 104 15 chr1 127839784 127840379 -154353285 - L1MB7 LINE L1 -19 6165 5518 308 228 1 0 chr1 127840429 127840513 -154353151 - MLT1J LTR MaLR -308 142 62 453 260 77 18 chr1 127840569 127840738 -154352926 - L3 LINE CR1 -37 1540 1362 464 255 304 5 chr1 127841778 127841962 -154351702 + MIR SINE MIR 23 261 -1 665 258 43 0 chr1 127842169 127842332 -154351332 - MIR SINE MIR -55 207 38 391 313 126 6 chr1 127843219 127843401 -154350263 - MIR SINE MIR -3 259 56 2141 231 98 25 chr1 127843480 127844033 -154349631 - MLT1E LTR MaLR 0 593 1 21 36 0 0 chr1 127844129 127844157 -154349507 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr1 127844644 127844680 -154348984 + (TATG)n Simple_repeat Simple_repeat 1 36 0 552 286 66 11 chr1 127845285 127845467 -154348197 + MIR3 SINE MIR 17 208 0 731 257 31 5 chr1 127845742 127845999 -154347665 - L2 LINE L2 -260 3053 2796 310 325 50 67 chr1 127846020 127846260 -154347404 - HAL1 LINE L1 -1170 1337 1102 266 217 0 24 chr1 127846289 127846372 -154347292 - L1MDa LINE L1 -5173 1367 1287 793 163 192 0 chr1 127847524 127847696 -154345968 - L1MA9 LINE L1 -49 6263 6059 1979 122 40 0 chr1 127847737 127848015 -154345649 + AluSx SINE Alu 1 289 -23 1407 155 97 3 chr1 127848049 127848339 -154345325 - L1MA8 LINE L1 -2 6289 5973 284 315 11 0 chr1 127848339 127848428 -154345236 + L2 LINE L2 3182 3271 -1 2097 120 0 3 chr1 127849031 127849315 -154344349 - AluSx SINE Alu -29 283 1 2675 17 0 3 chr1 127849437 127849732 -154343932 - AluY SINE Alu -17 294 1 217 267 0 0 chr1 127850470 127850515 -154343149 + (TG)n Simple_repeat Simple_repeat 1 45 0 241 290 16 0 chr1 127851474 127851536 -154342128 + CT-rich Low_complexity Low_complexity 2 64 0 199 114 0 29 chr1 127851677 127851712 -154341952 - L2 LINE L2 -31 3282 3249 334 296 57 50 chr1 127852603 127852762 -154340902 - L2 LINE L2 -40 3232 3073 308 196 196 117 chr1 127853266 127853506 -154340158 + MER112 DNA MER1_type 1 259 -1 411 208 31 31 chr1 127853784 127853880 -154339784 - MLT1H LTR MaLR 0 549 454 394 259 193 7 chr1 127853937 127854072 -154339592 - MLT1H LTR MaLR -195 354 195 225 246 35 0 chr1 127854157 127854214 -154339450 - MLT1H LTR MaLR -490 59 1 386 319 62 0 chr1 127854218 127854362 -154339302 - L2 LINE L2 -584 2730 2578 1319 231 55 7 chr1 127854645 127854953 -154338711 - MER58B DNA MER1_type 0 341 19 302 269 131 34 chr1 127855158 127855333 -154338331 - MIR SINE MIR -10 252 61 1657 52 19 0 chr1 127855333 127855589 -154338075 - L1PA3 LINE L1 0 6155 5942 649 128 26 17 chr1 127855926 127856043 -154337621 - L1MB5 LINE L1 0 6174 6057 425 284 140 4 chr1 127857710 127857939 -154335725 + MIR SINE MIR 3 262 0 2275 101 0 10 chr1 127858114 127858442 -154335222 - AluSq SINE Alu 0 313 2 1683 135 77 0 chr1 127858466 127858726 -154334938 - AluJb SINE Alu -23 289 10 633 288 74 53 chr1 127858976 127859456 -154334208 + MLT1H LTR MaLR 21 549 0 25 31 0 0 chr1 127860450 127860482 -154333182 + AT_rich Low_complexity Low_complexity 1 32 0 498 238 27 60 chr1 127860901 127861086 -154332578 + MLT1K LTR MaLR 405 583 -5 198 289 0 0 chr1 127862374 127862426 -154331238 - L2 LINE L2 -10 3262 3211 384 323 128 47 chr1 127862619 127863400 -154330264 + L2 LINE L2 2427 3263 -9 673 245 127 21 chr1 127864200 127864437 -154329227 + MIR SINE MIR 1 262 0 351 304 89 15 chr1 127864481 127864616 -154329048 - MIR SINE MIR -71 191 47 186 233 189 0 chr1 127865607 127865697 -154327967 + MIR SINE MIR 110 216 -46 1525 151 0 0 chr1 127865991 127866209 -154327455 + AluJo SINE Alu 39 256 -56 365 267 85 10 chr1 127866426 127866614 -154327050 + MIR SINE MIR 2 207 -55 492 344 102 45 chr1 127868513 127868914 -154324750 + L2 LINE L2 2849 3272 0 1095 243 104 83 chr1 127869000 127869557 -154324107 + L1ME4a LINE L1 5258 5839 -282 2468 76 0 7 chr1 127869557 127869861 -154323803 + AluY SINE Alu 1 302 -9 1095 243 104 83 chr1 127869861 127870121 -154323543 + L1ME4a LINE L1 5839 6092 -29 4571 173 66 7 chr1 127870165 127871045 -154322619 + L1MD2 LINE L1 5428 6359 0 614 192 67 106 chr1 127871054 127871309 -154322355 + L1MC5 LINE L1 7535 7779 -182 1791 142 0 72 chr1 127871316 127871634 -154322030 + AluJb SINE Alu 1 295 -17 2576 149 23 2 chr1 127871645 127872075 -154321589 + L1PB1 LINE L1 5710 6148 -3 2429 93 0 0 chr1 127872210 127872511 -154321153 - AluSg SINE Alu -9 301 1 1419 149 160 11 chr1 127873227 127873489 -154320175 + AluJb SINE Alu 1 301 -1 2133 79 38 17 chr1 127873564 127873855 -154319809 + AluSp SINE Alu 1 297 -16 294 200 42 0 chr1 127873884 127873979 -154319685 + (TA)n Simple_repeat Simple_repeat 1 99 0 382 305 92 85 chr1 127875135 127875430 -154318234 - L2 LINE L2 -5 3267 2971 569 263 161 21 chr1 127875991 127876234 -154317430 - L2 LINE L2 0 3313 3037 805 212 153 32 chr1 127876234 127876423 -154317241 + MER45C DNA AcHobo 1 212 -741 1020 177 148 44 chr1 127876458 127876759 -154316905 + MER45C DNA AcHobo 313 953 0 768 271 70 0 chr1 127876759 127877081 -154316583 - L2 LINE L2 -269 3044 2697 222 335 43 30 chr1 127877343 127877507 -154316157 - L2 LINE L2 -1906 1408 1243 200 271 116 16 chr1 127878152 127878281 -154315383 + L2 LINE L2 2195 2336 -978 1114 310 56 29 chr1 127878576 127879151 -154314513 - L2 LINE L2 0 3313 2695 2361 106 0 0 chr1 127879151 127879462 -154314202 - AluSq SINE Alu -2 311 1 1114 310 56 29 chr1 127879462 127879806 -154313858 - L2 LINE L2 -618 2695 2362 335 311 118 28 chr1 127879802 127880056 -154313608 - L3 LINE CR1 -105 1472 1196 * 1938 154 3 3 chr1 127881186 127881484 -154312180 - AluSx SINE Alu -14 298 1 479 167 273 20 chr1 127881858 127882008 -154311656 - MIR SINE MIR -44 218 31 180 271 47 24 chr1 127882076 127882161 -154311503 + L2 LINE L2 2967 3053 -219 2725 48 0 0 chr1 127882161 127882472 -154311192 - AluY SINE Alu 0 311 1 6731 177 146 62 chr1 127882697 127884210 -154309454 + L1MC3 LINE L1 5330 7277 -531 291 215 0 15 chr1 127884210 127884275 -154309389 + MLT1F1 LTR MaLR 45 108 -459 6731 177 146 62 chr1 127884275 127884857 -154308807 + L1MC3 LINE L1 7277 7808 0 2522 216 53 98 chr1 127885054 127886438 -154307226 + L1MC5 LINE L1 6447 7777 -184 366 96 0 0 chr1 127886442 127886494 -154307170 + Alu SINE Alu 249 300 0 1814 163 3 3 chr1 127888524 127888806 -154304858 + AluJb SINE Alu 1 282 -30 396 0 0 0 chr1 127888819 127888863 -154304801 + (CA)n Simple_repeat Simple_repeat 1 44 0 250 293 24 32 chr1 127888863 127888986 -154304678 + MER5B DNA MER1_type 55 176 -2 1100 281 164 13 chr1 127890473 127891188 -154302476 + L2 LINE L2 1921 2743 -571 467 226 67 55 chr1 127891224 127891388 -154302276 + L1M4 LINE L1 3852 4017 -2129 450 0 0 0 chr1 127891653 127891703 -154301961 + (TA)n Simple_repeat Simple_repeat 2 51 0 1179 121 0 17 chr1 127891705 127891878 -154301786 - AluY SINE Alu -15 296 127 237 155 0 69 chr1 127892448 127892506 -154301158 - MIR3 SINE MIR -11 197 144 933 222 279 0 chr1 127892506 127892825 -154300839 - L1MC1 LINE L1 0 7977 6155 1984 164 27 3 chr1 127893213 127893549 -154300115 + MER2 DNA MER2_type 1 344 0 259 240 211 10 chr1 127893811 127894015 -154299649 + MIR SINE MIR 17 261 -1 365 197 0 14 chr1 127894308 127894379 -154299285 - MER112 DNA MER1_type -6 254 185 435 106 0 0 chr1 127894399 127894465 -154299199 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 502 234 80 0 chr1 127894476 127894613 -154299051 - MER112 DNA MER1_type -111 149 2 305 219 0 0 chr1 127896630 127896694 -154296970 - L2 LINE L2 0 3313 3250 2301 147 28 25 chr1 127897051 127897446 -154296218 - MSTD LTR MaLR 0 396 1 1385 211 67 42 chr1 127897841 127898197 -154295467 - MLT2D LTR ERVL -48 366 2 777 200 217 6 chr1 127900074 127900254 -154293410 + MER20 DNA MER1_type 1 218 -1 1352 235 127 74 chr1 127900590 127901082 -154292582 + MLT1G1 LTR MaLR 1 528 -67 1118 43 0 14 chr1 127901082 127901220 -154292444 + L1PA7 LINE L1 6016 6151 -3 1352 235 127 74 chr1 127901220 127901292 -154292372 + MLT1G1 LTR MaLR 528 595 0 288 152 48 9 chr1 127901307 127901412 -154292252 + (TA)n Simple_repeat Simple_repeat 1 109 0 1658 45 0 5 chr1 127901482 127901682 -154291982 - L1PA7 LINE L1 -5 6149 5951 477 269 43 21 chr1 127901764 127901950 -154291714 - MER117 DNA MER1_type -5 192 3 2072 94 18 7 chr1 127902414 127902724 -154290940 - AluSc SINE Alu 0 313 1 277 275 201 13 chr1 127903611 127903760 -154289904 - MIR SINE MIR -77 185 9 423 98 0 0 chr1 127905445 127905506 -154288158 + (TG)n Simple_repeat Simple_repeat 1 61 0 233 318 23 0 chr1 127906261 127906349 -154287315 + GA-rich Low_complexity Low_complexity 2 91 0 382 257 7 36 chr1 127906877 127907017 -154286647 + L2 LINE L2 1949 2084 -1230 1832 213 130 81 chr1 127907032 127907850 -154285814 - L1MC5 LINE L1 -48 7913 7056 401 346 43 0 chr1 127907852 127908014 -154285650 + MIR SINE MIR 44 212 -50 502 266 89 0 chr1 127909011 127909180 -154284484 + MIR SINE MIR 78 261 -1 1596 174 58 56 chr1 127909260 127909357 -154284307 + L1MD2 LINE L1 5795 5890 -352 2249 103 7 0 chr1 127909357 127909648 -154284016 + AluSp SINE Alu 1 293 -20 1596 174 58 56 chr1 127909648 127910028 -154283636 + L1MD2 LINE L1 5890 6234 -8 909 260 39 41 chr1 127909975 127910337 -154283327 - HAL1 LINE L1 -299 2208 1848 * 1858 125 48 3 chr1 127912357 127912646 -154281018 + AluJo SINE Alu 7 308 -4 254 250 26 0 chr1 127913162 127913238 -154280426 - L1ME4a LINE L1 -2 6119 6042 689 275 80 88 chr1 127913307 127913550 -154280114 - HAL1 LINE L1 -2045 462 223 743 157 0 37 chr1 127913550 127913684 -154279980 - FLAM_A SINE Alu 0 133 5 689 275 80 88 chr1 127913684 127913905 -154279759 - HAL1 LINE L1 -2284 223 2 195 129 0 0 chr1 127913971 127914002 -154279662 + (TCC)n Simple_repeat Simple_repeat 1 31 0 923 216 0 0 chr1 127914002 127914164 -154279500 - FRAM SINE Alu -4 162 1 273 283 0 22 chr1 127914235 127914327 -154279337 - L1ME LINE L1 -459 5662 5573 238 173 147 40 chr1 127915644 127915719 -154277945 - MIR SINE MIR -3 259 177 * 843 234 65 42 chr1 127915699 127916006 -154277658 + L2 LINE L2 3000 3313 0 800 222 23 0 chr1 127916010 127916186 -154277478 - MIR SINE MIR -71 191 12 22 0 0 0 chr1 127916235 127916257 -154277407 + AT_rich Low_complexity Low_complexity 1 22 0 1339 92 0 0 chr1 127916264 127916428 -154277236 + AluSp SINE Alu 132 295 -18 1641 157 14 55 chr1 127917491 127917615 -154276049 + AluJb SINE Alu 3 131 -188 2296 98 0 3 chr1 127917615 127917902 -154275762 - AluSq SINE Alu -25 288 3 1641 157 14 55 chr1 127917902 127918106 -154275558 + AluJb SINE Alu 131 319 0 2510 70 3 0 chr1 127918128 127918428 -154275236 + AluSg SINE Alu 3 303 -7 24 0 0 0 chr1 127918464 127918488 -154275176 + AT_rich Low_complexity Low_complexity 1 24 0 2100 100 40 3 chr1 127919097 127919396 -154274268 - AluSg SINE Alu 0 310 1 1668 196 0 13 chr1 127919422 127919738 -154273926 - AluJb SINE Alu 0 312 1 2286 103 3 10 chr1 127919861 127920162 -154273502 + AluSp SINE Alu 1 299 -14 1984 98 0 0 chr1 127920301 127920556 -154273108 + AluSx SINE Alu 40 294 -18 3939 41 0 0 chr1 127920585 127921069 -154272595 + L1PA5 LINE L1 5675 6158 0 206 209 0 76 chr1 127921205 127921310 -154272354 + (TAAA)n Simple_repeat Simple_repeat 4 100 0 2167 110 13 0 chr1 127921359 127921658 -154272006 + AluSq SINE Alu 1 303 -10 2106 117 0 0 chr1 127922495 127922800 -154270864 + AluSx SINE Alu 1 305 0 2371 94 3 0 chr1 127923027 127923336 -154270328 - AluSp SINE Alu -3 310 1 2330 94 3 0 chr1 127923464 127923763 -154269901 - AluSg SINE Alu -10 300 1 306 183 17 0 chr1 127923828 127923888 -154269776 - L1M4 LINE L1 -1537 4609 4549 743 223 0 0 chr1 127923906 127924036 -154269628 - FLAM_A SINE Alu -2 131 2 1829 185 0 0 chr1 127924057 127924355 -154269309 - AluSx SINE Alu -12 300 3 279 233 0 0 chr1 127924358 127924418 -154269246 - L1M4 LINE L1 -1599 4547 4488 292 37 37 37 chr1 127924418 127924472 -154269192 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 10598 44 8 80 chr1 127924472 127925936 -154267728 - SVA Other Other -23 1363 5 864 295 70 16 chr1 127925988 127926504 -154267160 - L1M4 LINE L1 -1649 4497 3954 2341 85 0 0 chr1 127926504 127926814 -154266850 - AluSx SINE Alu 0 310 1 240 196 31 55 chr1 127926825 127926988 -154266676 + (TA)n Simple_repeat Simple_repeat 1 159 0 272 314 32 57 chr1 127927107 127927355 -154266309 - L2 LINE L2 -630 2684 2443 2803 124 11 82 chr1 127927360 127927738 -154265926 - L1MB3 LINE L1 0 6183 5858 2377 84 0 3 chr1 127927738 127928034 -154265630 - AluSq SINE Alu -18 295 1 2803 124 11 82 chr1 127928034 127928228 -154265436 - L1MB3 LINE L1 -325 5858 5652 192 77 0 0 chr1 127928269 127928295 -154265369 + (TCCCC)n Simple_repeat Simple_repeat 2 27 0 24 77 0 0 chr1 127928759 127928811 -154264853 + AT_rich Low_complexity Low_complexity 1 52 0 1110 154 23 11 chr1 127928845 127929020 -154264644 + AluSg1 SINE Alu 1 177 -132 263 227 0 67 chr1 127929049 127929124 -154264540 - MIR SINE MIR -133 129 60 816 213 64 36 chr1 127929307 127929474 -154264190 - Charlie2 DNA MER1_type -3 2859 2681 1721 103 137 0 chr1 127929474 127929736 -154263928 - AluSx SINE Alu -4 298 1 816 213 64 36 chr1 127929736 127929817 -154263847 - Charlie2 DNA MER1_type -181 2681 2604 679 149 8 45 chr1 127929823 127929957 -154263707 - FRAM SINE Alu 0 40 1 2358 89 3 0 chr1 127930072 127930365 -154263299 + AluSp SINE Alu 1 294 -19 794 244 124 16 chr1 127930365 127930615 -154263049 - Charlie2 DNA MER1_type -2549 313 37 814 205 72 0 chr1 127931478 127931642 -154262022 + MER34C LTR ERV1 1 176 -409 442 91 0 0 chr1 127931642 127931697 -154261967 + Tigger2 DNA MER2_type 1 55 -2663 1210 123 6 0 chr1 127931697 127931860 -154261804 - AluSg/x SINE Alu -15 297 134 2241 105 3 3 chr1 127931860 127932154 -154261510 - AluSg SINE Alu -16 294 1 2291 103 13 7 chr1 127932197 127932507 -154261157 + AluSp SINE Alu 1 312 -1 211 203 203 14 chr1 127932507 127932581 -154261083 + L2 LINE L2 3189 3276 -37 295 284 254 5 chr1 127932597 127932794 -154260870 - L3 LINE CR1 -149 1428 1183 366 283 119 40 chr1 127932852 127933029 -154260635 + MIR SINE MIR 2 192 -70 207 0 0 0 chr1 127933036 127933059 -154260605 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2253 89 4 0 chr1 127933061 127933341 -154260323 - AluSc SINE Alu -28 281 1 3681 120 30 35 chr1 127933400 127933487 -154260177 - L1PB4 LINE L1 0 6156 6070 2427 82 7 0 chr1 127933487 127933790 -154259874 - AluSp SINE Alu -8 305 1 3681 120 30 35 chr1 127933790 127934334 -154259330 - L1PB4 LINE L1 -86 6070 5528 584 263 50 0 chr1 127934396 127934575 -154259089 + MIR SINE MIR 75 262 0 2166 111 0 46 chr1 127935629 127935954 -154257710 - AluSx SINE Alu -2 310 1 2261 107 3 0 chr1 127935957 127936256 -154257408 - AluY SINE Alu -11 300 1 2230 119 0 3 chr1 127936321 127936624 -154257040 - AluSx SINE Alu -10 302 1 892 199 30 18 chr1 127937047 127937213 -154256451 + MER45A DNA AcHobo 1 168 -10 2172 82 0 11 chr1 127937656 127937962 -154255702 - AluSx SINE Alu 0 309 7 216 222 0 56 chr1 127938014 127938086 -154255578 + C-rich Low_complexity Low_complexity 3 70 0 204 67 0 0 chr1 127938494 127938524 -154255140 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2301 107 0 7 chr1 127938603 127938913 -154254751 - AluSq SINE Alu -5 308 1 194 91 30 0 chr1 127939593 127939626 -154254038 + (TG)n Simple_repeat Simple_repeat 1 34 0 507 251 129 23 chr1 127939650 127939821 -154253843 - MER5A DNA MER1_type 0 189 1 915 216 122 16 chr1 127940369 127940526 -154253138 + MLT1A1 LTR MaLR 1 140 -225 2174 103 0 7 chr1 127940526 127940816 -154252848 + AluSx SINE Alu 1 288 -24 915 216 122 16 chr1 127940816 127940913 -154252751 + MLT1A1 LTR MaLR 140 282 -83 11545 100 18 30 chr1 127940913 127942618 -154251046 - Tigger2 DNA MER2_type -501 2217 534 758 108 0 9 chr1 127942618 127942729 -154250935 - AluSp/q SINE Alu -16 297 188 1632 91 0 52 chr1 127942729 127942960 -154250704 - AluSx SINE Alu -93 219 1 1240 116 18 44 chr1 127942960 127943076 -154250588 - Tigger2 DNA MER2_type -2338 380 271 2440 86 7 3 chr1 127943076 127943380 -154250284 - AluSx SINE Alu -7 305 1 1240 116 18 44 chr1 127943380 127943488 -154250176 - Tigger2 DNA MER2_type -2447 271 162 2315 100 0 0 chr1 127943488 127943789 -154249875 - AluSg SINE Alu -9 301 1 306 273 128 51 chr1 127943987 127944217 -154249447 + L3 LINE CR1 1261 1561 -16 2207 125 0 0 chr1 127944217 127944513 -154249151 - AluSx SINE Alu -16 296 1 306 273 128 51 chr1 127944513 127944532 -154249132 + L3 LINE CR1 1561 1577 0 676 324 21 8 chr1 127945912 127946150 -154247514 - L1M3d LINE L1 -5650 241 1 26 30 0 0 chr1 127946196 127946229 -154247435 + AT_rich Low_complexity Low_complexity 1 33 0 2463 68 0 3 chr1 127946304 127946599 -154247065 - AluY SINE Alu -17 294 1 28 0 0 0 chr1 127946599 127946627 -154247037 + AT_rich Low_complexity Low_complexity 1 28 0 355 234 47 0 chr1 127946912 127947019 -154246645 - L1MC4a LINE L1 -1879 5929 5818 2263 93 3 43 chr1 127947160 127947482 -154246182 + AluSx SINE Alu 1 309 -3 436 255 47 27 chr1 127947573 127947722 -154245942 - MIR SINE MIR -37 225 74 249 220 102 0 chr1 127949154 127949213 -154244451 - L2 LINE L2 -2 3270 3206 2323 101 0 0 chr1 127949507 127949805 -154243859 + AluSx SINE Alu 1 298 -14 270 286 0 102 chr1 127949944 127950091 -154243573 + L1ME LINE L1 5525 5656 -465 21 36 0 0 chr1 127950240 127950268 -154243396 + AT_rich Low_complexity Low_complexity 1 28 0 784 204 112 135 chr1 127950527 127951110 -154242554 + L1MC4 LINE L1 7460 8011 -31 2215 116 0 0 chr1 127951226 127951529 -154242135 + AluSx SINE Alu 1 303 -9 2420 69 0 3 chr1 127951790 127952080 -154241584 - AluSc SINE Alu -19 290 2 274 111 0 0 chr1 127952187 127952232 -154241432 + MER31A LTR ERV1 441 485 0 670 210 0 0 chr1 127952278 127952397 -154241267 - FLAM_A SINE Alu -14 119 1 2324 89 0 0 chr1 127952857 127953161 -154240503 - AluSg SINE Alu 0 306 3 218 333 125 8 chr1 127953162 127953282 -154240382 - MIR SINE MIR -96 166 33 1305 122 17 0 chr1 127953326 127953506 -154240158 + AluSg/x SINE Alu 111 293 -17 3107 204 85 65 chr1 127953510 127954377 -154239287 - MER31A-int LTR ERV1 -4042 894 10 1927 146 126 58 chr1 127954421 127954873 -154238791 - MER31A LTR ERV1 0 485 3 191 239 22 0 chr1 127955189 127955235 -154238429 - L2 LINE L2 -16 3256 3210 2187 94 7 13 chr1 127955460 127955767 -154237897 + AluY SINE Alu 1 305 -6 736 304 91 21 chr1 127955870 127956209 -154237455 + L2 LINE L2 2937 3299 -14 432 250 121 0 chr1 127956219 127956359 -154237305 - MIR SINE MIR -66 196 40 423 182 172 4 chr1 127956375 127956573 -154237091 - MER5C DNA MER1_type 0 324 5 205 204 56 19 chr1 127956606 127956660 -154237004 - MER5B DNA MER1_type -1 177 122 2078 100 18 0 chr1 127956664 127956944 -154236720 + AluSx SINE Alu 4 288 -24 29 0 0 0 chr1 127956944 127956973 -154236691 + AT_rich Low_complexity Low_complexity 1 29 0 508 73 0 0 chr1 127957930 127957998 -154235666 - L1MA10 LINE L1 -8 6326 6259 2035 147 6 13 chr1 127958489 127958802 -154234862 + AluJb SINE Alu 1 311 -1 2022 119 0 21 chr1 127958804 127959122 -154234542 + AluSg SINE Alu 1 312 0 21 0 0 0 chr1 127959981 127960002 -154233662 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr1 127960815 127960868 -154232796 + AT_rich Low_complexity Low_complexity 1 53 0 184 322 0 0 chr1 127960911 127960970 -154232694 - L3 LINE CR1 -1 1576 1518 351 324 7 28 chr1 127961052 127961194 -154232470 + MIR SINE MIR 22 160 -102 2327 101 0 0 chr1 127962331 127962629 -154231035 + AluSc SINE Alu 1 298 -11 2218 94 14 0 chr1 127962767 127963053 -154230611 + AluSg SINE Alu 1 290 -20 192 295 147 39 chr1 127963790 127963946 -154229718 + MIR SINE MIR 60 232 -30 1555 17 0 0 chr1 127964253 127964429 -154229235 - L1PA3 LINE L1 0 6155 5980 2292 119 6 0 chr1 127965020 127965331 -154228333 - AluSq SINE Alu 0 313 1 832 163 74 0 chr1 127966820 127966955 -154226709 + AluSq/x SINE Alu 1 145 -167 1756 100 38 0 chr1 127966955 127967195 -154226469 + AluSx SINE Alu 55 303 -9 1296 120 0 6 chr1 127967658 127967833 -154225831 - AluSp SINE Alu -139 174 1 2146 128 3 0 chr1 127967837 127968141 -154225523 - AluSg SINE Alu 0 310 6 442 244 110 7 chr1 127968275 127968428 -154225236 - MIR SINE MIR -57 205 38 2168 118 0 3 chr1 127968447 127968751 -154224913 + AluSq SINE Alu 1 303 -10 2212 90 21 0 chr1 127969220 127969508 -154224156 - AluSp SINE Alu -19 294 1 2447 43 0 7 chr1 127969537 127969817 -154223847 - AluSc SINE Alu -31 278 1 1751 108 0 0 chr1 127972709 127972940 -154220724 - AluSx SINE Alu -81 231 1 2467 90 3 0 chr1 127972960 127973270 -154220394 - AluSp SINE Alu -2 311 1 246 284 27 0 chr1 127973865 127973939 -154219725 + L2 LINE L2 3227 3302 -11 2037 128 24 0 chr1 127973961 127974251 -154219413 + AluSx SINE Alu 1 297 -15 3724 162 34 85 chr1 127974414 127974743 -154218921 + L1MB3 LINE L1 5124 5468 -715 236 30 30 0 chr1 127974743 127974776 -154218888 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 3724 162 34 85 chr1 127974776 127974863 -154218801 + L1MB3 LINE L1 5468 5558 -625 2047 122 18 0 chr1 127974863 127975149 -154218515 + AluSx SINE Alu 1 291 -21 3724 162 34 85 chr1 127975149 127975470 -154218194 + L1MB3 LINE L1 5558 5787 -396 2377 84 0 3 chr1 127975470 127975766 -154217898 + AluSq SINE Alu 1 295 -18 3724 162 34 85 chr1 127975766 127976144 -154217520 + L1MB3 LINE L1 5787 6183 0 272 314 32 57 chr1 127976149 127976397 -154217267 + L2 LINE L2 2443 2684 -630 240 196 31 55 chr1 127976516 127976679 -154216985 + (TA)n Simple_repeat Simple_repeat 2 160 0 2342 85 0 0 chr1 127976690 127977000 -154216664 + AluSx SINE Alu 1 310 0 864 295 70 16 chr1 127977000 127977516 -154216148 + L1M4 LINE L1 3954 4497 -1649 10599 44 8 80 chr1 127977568 127979086 -154214578 + SVA Other Other 5 1417 0 298 152 6 262 chr1 127979086 127979149 -154214515 + L1M4 LINE L1 4488 4565 -1581 1829 185 0 0 chr1 127979149 127979447 -154214217 + AluSx SINE Alu 3 300 -12 298 152 6 262 chr1 127979447 127979468 -154214196 + L1M4 LINE L1 4565 4514 -1632 743 223 0 0 chr1 127979468 127979598 -154214066 + FLAM_A SINE Alu 2 131 -2 298 152 6 262 chr1 127979598 127979676 -154213988 + L1M4 LINE L1 4513 4609 -1537 2330 94 3 0 chr1 127979741 127980040 -154213624 + AluSg SINE Alu 1 300 -10 2371 94 3 0 chr1 127980168 127980477 -154213187 + AluSp SINE Alu 1 310 -3 2291 71 0 11 chr1 127980704 127981009 -154212655 - AluSc SINE Alu 0 302 1 2134 129 7 10 chr1 127981052 127981362 -154212302 + AluSq SINE Alu 1 309 -4 276 170 0 0 chr1 127981427 127981474 -154212190 - MER5A DNA MER1_type -5 184 138 1837 147 4 4 chr1 127981494 127981790 -154211874 + AluSx SINE Alu 12 307 0 806 223 13 0 chr1 127981797 127981954 -154211710 - MER5A DNA MER1_type -28 161 3 205 302 0 0 chr1 127983064 127983117 -154210547 + GA-rich Low_complexity Low_complexity 6 58 0 596 237 133 47 chr1 127983285 127983440 -154210224 - MIR SINE MIR -12 250 71 2240 110 3 3 chr1 127983440 127983741 -154209923 + AluSg SINE Alu 1 301 -9 596 237 133 47 chr1 127983741 127983796 -154209868 - MIR SINE MIR -191 71 22 2185 72 69 7 chr1 127983796 127984087 -154209577 - AluY SINE Alu -2 309 1 601 200 2 10 chr1 127984181 127984322 -154209342 - MIR SINE MIR -62 146 36 1275 173 3 144 chr1 127985217 127985564 -154208100 - AluSx SINE Alu -14 298 1 184 239 97 62 chr1 127985961 127986074 -154207590 - MIR SINE MIR -70 192 76 306 314 103 21 chr1 127986438 127986571 -154207093 + MIR SINE MIR 1 122 -140 2245 98 3 0 chr1 127986571 127986858 -154206806 + AluSg SINE Alu 1 288 -22 306 314 103 21 chr1 127986858 127986966 -154206698 + MIR SINE MIR 122 262 0 345 242 105 0 chr1 127987072 127987167 -154206497 + MER5B DNA MER1_type 1 105 -73 272 300 146 27 chr1 127987369 127987749 -154205915 + MLT1K LTR MaLR 121 577 -11 295 318 96 62 chr1 127988104 127988358 -154205306 + L2 LINE L2 2815 3088 -184 1887 134 0 66 chr1 127988358 127988678 -154204986 - AluJb SINE Alu -13 299 1 295 318 96 62 chr1 127988678 127988807 -154204857 + L2 LINE L2 3088 3211 -61 471 250 47 76 chr1 127988812 127988962 -154204702 + MIR SINE MIR 2 144 -118 2315 81 3 0 chr1 127988962 127989246 -154204418 + AluSp SINE Alu 1 285 -28 471 250 47 76 chr1 127989246 127989331 -154204333 + MIR SINE MIR 144 230 -32 2718 33 3 0 chr1 127989458 127989765 -154203899 - AluY SINE Alu -3 308 1 2080 117 7 0 chr1 127989767 127990050 -154203614 - AluSx SINE Alu -17 295 11 2125 128 10 7 chr1 127990065 127990371 -154203293 - AluSg SINE Alu -3 307 1 2263 102 7 10 chr1 127990375 127990680 -154202984 - AluSx SINE Alu -8 304 1 643 170 7 43 chr1 127990809 127990825 -154202839 - L1MA10 LINE L1 0 6334 6319 1684 219 37 59 chr1 127990825 127990950 -154202714 - L1ME1 LINE L1 -5 6161 6035 2408 78 7 0 chr1 127990950 127991246 -154202418 + AluSq SINE Alu 3 300 -13 1684 219 37 59 chr1 127991246 127991628 -154202036 - L1ME1 LINE L1 -131 6035 5665 843 135 0 8 chr1 127991814 127991947 -154201717 + FLAM_C SINE Alu 2 133 0 2505 77 10 6 chr1 127992107 127992418 -154201246 + AluSp SINE Alu 1 312 -1 231 164 219 14 chr1 127992418 127992491 -154201173 + L2 LINE L2 3189 3276 -37 295 284 254 5 chr1 127992507 127992704 -154200960 - L3 LINE CR1 -149 1428 1183 366 283 119 40 chr1 127992762 127992939 -154200725 + MIR SINE MIR 2 192 -70 207 0 0 0 chr1 127992946 127992969 -154200695 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2253 89 4 0 chr1 127992971 127993251 -154200413 - AluSc SINE Alu -28 281 1 3681 120 30 35 chr1 127993310 127993397 -154200267 - L1PB4 LINE L1 0 6156 6070 2427 82 7 0 chr1 127993397 127993700 -154199964 - AluSp SINE Alu -8 305 1 3681 120 30 35 chr1 127993700 127994244 -154199420 - L1PB4 LINE L1 -86 6070 5528 584 263 50 0 chr1 127994306 127994485 -154199179 + MIR SINE MIR 75 262 0 2166 111 0 46 chr1 127995539 127995864 -154197800 - AluSx SINE Alu -2 310 1 2261 107 3 0 chr1 127995867 127996166 -154197498 - AluY SINE Alu -11 300 1 2230 119 0 3 chr1 127996231 127996534 -154197130 - AluSx SINE Alu -10 302 1 892 199 30 18 chr1 127996958 127997124 -154196540 + MER45A DNA AcHobo 1 168 -10 235 0 0 0 chr1 127997567 127997593 -154196071 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2172 82 0 11 chr1 127997593 127997873 -154195791 - AluSx SINE Alu -29 283 7 216 222 0 56 chr1 127997925 127997997 -154195667 + C-rich Low_complexity Low_complexity 3 70 0 204 67 0 0 chr1 127998405 127998435 -154195229 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 2186 113 0 0 chr1 127998514 127998824 -154194840 - AluSq SINE Alu -3 310 1 194 91 30 0 chr1 127999504 127999537 -154194127 + (TG)n Simple_repeat Simple_repeat 1 34 0 579 251 129 23 chr1 127999561 127999732 -154193932 - MER5A DNA MER1_type 0 189 1 924 216 122 16 chr1 128000280 128000437 -154193227 + MLT1A1 LTR MaLR 1 140 -225 2048 103 0 7 chr1 128000437 128000727 -154192937 + AluSx SINE Alu 1 288 -24 924 216 122 16 chr1 128000727 128000824 -154192840 + MLT1A1 LTR MaLR 140 282 -83 11490 100 18 30 chr1 128000824 128002529 -154191135 - Tigger2 DNA MER2_type -501 2217 534 761 108 0 9 chr1 128002529 128002640 -154191024 - AluSp/q SINE Alu -16 297 188 1533 91 0 52 chr1 128002640 128002871 -154190793 - AluSx SINE Alu -93 219 1 1246 107 16 62 chr1 128002871 128002987 -154190677 - Tigger2 DNA MER2_type -2338 380 260 2305 86 7 3 chr1 128002987 128003291 -154190373 - AluSx SINE Alu -7 305 1 1246 107 16 62 chr1 128003291 128003399 -154190265 - Tigger2 DNA MER2_type -2458 260 165 2277 68 3 23 chr1 128003399 128003707 -154189957 - AluY SINE Alu -9 302 1 1246 107 16 62 chr1 128003707 128003724 -154189940 - Tigger2 DNA MER2_type -2553 165 149 2204 88 3 3 chr1 128003738 128004032 -154189632 + AluSg SINE Alu 1 294 -16 1139 123 6 0 chr1 128004032 128004195 -154189469 + AluSg/x SINE Alu 132 295 -15 442 91 0 0 chr1 128004195 128004250 -154189414 + MER8 DNA MER2_type 185 239 0 * 810 205 72 0 chr1 128004250 128004414 -154189250 - MER34C LTR ERV1 -409 176 1 788 244 124 16 chr1 128005277 128005527 -154188137 + Charlie2 DNA MER1_type 37 313 -2549 2230 89 3 0 chr1 128005527 128005820 -154187844 - AluSp SINE Alu -19 294 1 678 149 8 45 chr1 128005935 128006069 -154187595 + FRAM SINE Alu 1 40 0 798 213 64 36 chr1 128006075 128006156 -154187508 + Charlie2 DNA MER1_type 2604 2681 -181 1739 103 137 0 chr1 128006156 128006418 -154187246 + AluSx SINE Alu 1 298 -4 798 213 64 36 chr1 128006418 128006585 -154187079 + Charlie2 DNA MER1_type 2681 2859 -3 294 227 0 67 chr1 128006768 128006843 -154186821 + MIR SINE MIR 60 129 -133 1048 154 23 11 chr1 128006872 128007047 -154186617 - AluSg SINE Alu -133 177 1 29 84 0 0 chr1 128007079 128007150 -154186514 + AT_rich Low_complexity Low_complexity 1 71 0 2277 64 4 0 chr1 128007174 128007493 -154186171 - AluSx SINE Alu 0 320 1 2339 91 0 0 chr1 128007572 128007879 -154185785 + AluSc SINE Alu 1 307 -2 1441 87 5 5 chr1 128007879 128008075 -154185589 + AluSg/x SINE Alu 108 303 -9 2099 118 0 0 chr1 128008415 128008711 -154184953 - AluSx SINE Alu -16 296 1 2025 128 3 0 chr1 128008715 128009019 -154184645 - AluSg SINE Alu 0 310 6 2293 88 0 3 chr1 128009114 128009419 -154184245 + AluSq SINE Alu 1 304 -9 2100 111 0 3 chr1 128009969 128010266 -154183398 - AluSx SINE Alu -16 296 1 586 259 107 0 chr1 128010285 128010479 -154183185 + MIR SINE MIR 38 251 -11 2000 108 3 17 chr1 128011386 128011683 -154181981 - AluSx SINE Alu -19 293 1 216 0 0 0 chr1 128011845 128011869 -154181795 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 182 31 0 62 chr1 128012084 128012096 -154181568 + (TAAAAA)n Simple_repeat Simple_repeat 5 16 -18 704 191 0 8 chr1 128012096 128012227 -154181437 + FLAM_C SINE Alu 1 130 -3 182 31 0 62 chr1 128012227 128012246 -154181418 + (TAAAAA)n Simple_repeat Simple_repeat 16 34 0 2326 73 3 0 chr1 128012482 128012782 -154180882 - AluSc SINE Alu -8 301 1 317 255 47 60 chr1 128013527 128013661 -154180003 - MIR3 SINE MIR -20 188 50 2132 98 0 23 chr1 128013677 128013982 -154179682 + AluSx SINE Alu 1 298 -14 390 301 137 0 chr1 128014623 128014769 -154178895 - MIR SINE MIR -44 218 53 323 248 7 118 chr1 128014743 128014896 -154178768 - MIR3 SINE MIR -13 195 60 * 2204 112 0 0 chr1 128015616 128015920 -154177744 - AluSx SINE Alu -8 304 1 1742 128 4 8 chr1 128016018 128016193 -154177471 - AluSq SINE Alu -3 310 135 2197 96 0 0 chr1 128016193 128016486 -154177178 - AluSp SINE Alu -20 293 1 1742 128 4 8 chr1 128016486 128016576 -154177088 - AluSq SINE Alu -178 135 46 1522 97 0 5 chr1 128016702 128016909 -154176755 - AluSg/x SINE Alu -20 290 85 2017 115 7 0 chr1 128016954 128017250 -154176414 + AluSp SINE Alu 1 298 -15 2247 95 7 0 chr1 128017879 128018183 -154175481 - AluSq SINE Alu -7 306 1 1372 157 157 0 chr1 128018298 128018565 -154175099 + AluJb SINE Alu 1 309 -3 32 47 0 16 chr1 128018607 128018628 -154175036 + AT_rich Low_complexity Low_complexity 1 21 -42 563 144 216 18 chr1 128018628 128018739 -154174925 + FLAM_C SINE Alu 1 133 0 32 47 0 16 chr1 128018739 128018781 -154174883 + AT_rich Low_complexity Low_complexity 21 63 0 2125 115 3 10 chr1 128019057 128019369 -154174295 + AluSq SINE Alu 1 310 -3 258 32 0 0 chr1 128019369 128019400 -154174264 + (TA)n Simple_repeat Simple_repeat 1 31 0 2033 90 0 4 chr1 128019439 128019717 -154173947 + AluSg SINE Alu 1 277 -33 243 0 0 0 chr1 128019765 128019792 -154173872 + (A)n Simple_repeat Simple_repeat 1 27 0 258 326 121 7 chr1 128019803 128019944 -154173720 + L3 LINE CR1 195 351 -1226 * 772 333 67 25 chr1 128019943 128020388 -154173276 - L2 LINE L2 -1 3312 2849 180 345 0 0 chr1 128020420 128020475 -154173189 + L3 LINE CR1 359 413 -1164 568 245 98 66 chr1 128020485 128020695 -154172969 - MER34B LTR ERV1 0 565 338 2122 106 10 0 chr1 128020695 128020998 -154172666 - AluSx SINE Alu -6 306 1 568 245 98 66 chr1 128020998 128021122 -154172542 - MER34B LTR ERV1 -227 338 220 2313 51 3 7 chr1 128021302 128021595 -154172069 - AluY SINE Alu -13 298 7 646 243 148 5 chr1 128021605 128021807 -154171857 + L2 LINE L2 2521 2751 -563 2206 83 3 29 chr1 128021807 128022119 -154171545 + AluSp SINE Alu 1 304 -9 623 335 106 15 chr1 128022200 128022540 -154171124 - LTR16A LTR ERVL -79 371 1 820 228 12 0 chr1 128022566 128022728 -154170936 + FAM SINE Alu 1 164 -11 424 296 341 8 chr1 128022760 128023132 -154170532 + L2 LINE L2 2805 3300 -13 2574 52 0 0 chr1 128023137 128023446 -154170218 - AluY SINE Alu -2 309 1 2096 115 0 16 chr1 128023446 128023750 -154169914 - AluSg SINE Alu -11 299 1 1473 193 0 4 chr1 128023752 128024017 -154169647 - AluJo SINE Alu -11 301 38 619 295 79 24 chr1 128024017 128024271 -154169393 + L3 LINE CR1 487 754 -823 1273 243 53 44 chr1 128024272 128024683 -154168981 + L1ME3A LINE L1 5735 6149 -21 2069 114 3 0 chr1 128024699 128024988 -154168676 - AluSq SINE Alu -23 290 1 2366 70 0 10 chr1 128025053 128025354 -154168310 - AluY SINE Alu -13 298 1 334 339 8 8 chr1 128025364 128025482 -154168182 - L1 LINE L1 -2056 4090 3973 608 264 47 118 chr1 128025501 128025647 -154168017 + L1ME3 LINE L1 5460 5615 -547 2193 88 0 0 chr1 128025647 128025996 -154167668 + AluSx SINE Alu 1 349 0 608 264 47 118 chr1 128025996 128026312 -154167352 + L1ME3 LINE L1 5615 5902 -260 584 279 41 20 chr1 128026501 128026698 -154166966 + L3 LINE CR1 898 1098 -479 1533 178 45 3 chr1 128026832 128027118 -154166546 + AluJo SINE Alu 1 298 -14 767 185 0 20 chr1 128027128 128027288 -154166376 + MIR SINE MIR 34 188 -62 323 236 31 71 chr1 128027344 128027356 -154166308 - L1ME4a LINE L1 -14 6107 6096 2078 127 0 0 chr1 128027356 128027664 -154166000 - AluSg SINE Alu -2 308 1 323 236 31 71 chr1 128027664 128027778 -154165886 - L1ME4a LINE L1 -25 6096 5986 385 273 296 41 chr1 128027845 128028092 -154165572 + L3 LINE CR1 1243 1564 -13 2083 125 0 0 chr1 128028092 128028388 -154165276 - AluSx SINE Alu -16 296 1 385 273 296 41 chr1 128028388 128028407 -154165257 + L3 LINE CR1 1564 1577 0 2942 161 78 43 chr1 128029682 128029783 -154163881 - L1MC4 LINE L1 -119 7923 7827 2229 94 7 0 chr1 128029783 128030091 -154163573 - AluSg SINE Alu 0 310 1 2942 161 78 43 chr1 128030091 128030565 -154163099 - L1MC4 LINE L1 -215 7827 7320 2158 104 3 13 chr1 128030565 128030873 -154162791 - AluSg SINE Alu -5 305 1 2942 161 78 43 chr1 128030873 128030947 -154162717 - L1MC4 LINE L1 -722 7320 7250 2106 72 7 33 chr1 128030948 128031252 -154162412 + AluSx SINE Alu 1 296 -16 2266 90 3 3 chr1 128031252 128031562 -154162102 + AluSq SINE Alu 1 310 -3 849 222 167 28 chr1 128031562 128031814 -154161850 - L1MC4 LINE L1 -1222 6820 6534 1985 104 0 41 chr1 128031814 128032130 -154161534 - AluSq SINE Alu -10 303 1 1729 132 89 0 chr1 128032184 128032464 -154161200 + AluSx SINE Alu 2 306 -6 2241 77 0 0 chr1 128032665 128032952 -154160712 - AluSq SINE Alu -11 302 16 2298 88 3 0 chr1 128033009 128033315 -154160349 + AluSp SINE Alu 1 307 -6 2138 89 0 0 chr1 128034727 128035007 -154158657 - AluSg SINE Alu -13 297 18 2241 60 7 0 chr1 128035088 128035394 -154158270 + AluY SINE Alu 1 308 0 2112 107 0 0 chr1 128035489 128035780 -154157884 - AluSx SINE Alu -21 291 1 2140 93 10 22 chr1 128036149 128036462 -154157202 - AluSg SINE Alu -1 309 1 2113 115 3 3 chr1 128036552 128036864 -154156800 - AluSp SINE Alu -1 312 1 2092 110 10 0 chr1 128036864 128037164 -154156500 - AluSg SINE Alu -7 303 1 2041 85 7 33 chr1 128037791 128038097 -154155567 + AluSp SINE Alu 3 300 -13 1812 146 7 0 chr1 128038296 128038606 -154155058 + AluSg SINE Alu 1 312 0 290 274 12 36 chr1 128038692 128038776 -154154888 - MER81 DNA DNA -3 111 30 2176 63 0 0 chr1 128038811 128039081 -154154583 + AluSg1 SINE Alu 26 295 -14 505 198 132 9 chr1 128039120 128039226 -154154438 - FLAM_C SINE Alu -23 120 2 753 324 204 12 chr1 128039285 128039884 -154153780 - L3 LINE CR1 -394 1183 470 374 299 51 35 chr1 128039968 128040015 -154153649 + MARNA DNA Mariner 223 268 -318 887 189 163 71 chr1 128040015 128040191 -154153473 + MSTC LTR MaLR 1 159 -269 1955 101 3 80 chr1 128040191 128040270 -154153394 + AluSg SINE Alu 1 85 -225 2382 59 16 7 chr1 128040270 128040576 -154153088 + AluY SINE Alu 1 309 -2 1955 101 3 80 chr1 128040576 128040655 -154153009 + AluSg SINE Alu 85 169 -141 2278 84 7 0 chr1 128040655 128040963 -154152701 + AluSx SINE Alu 1 310 -2 1955 101 3 80 chr1 128040963 128041139 -154152525 + AluSg SINE Alu 169 310 0 887 189 163 71 chr1 128041139 128041354 -154152310 + MSTC LTR MaLR 159 428 0 374 299 51 35 chr1 128041354 128041503 -154152161 + MARNA DNA Mariner 268 422 -164 329 278 122 0 chr1 128041613 128041703 -154151961 + MIR SINE MIR 1 101 -161 181 244 49 0 chr1 128041707 128041748 -154151916 + MIR SINE MIR 206 248 -14 4471 156 57 52 chr1 128041755 128042191 -154151473 + MER21B LTR ERV1 1 444 -419 1987 129 0 3 chr1 128042191 128042486 -154151178 - AluSx SINE Alu -16 296 3 4471 156 57 52 chr1 128042486 128042908 -154150756 + MER21B LTR ERV1 444 863 0 458 323 39 7 chr1 128042927 128043082 -154150582 - MIR SINE MIR -15 247 88 1911 140 3 23 chr1 128043569 128043869 -154149795 - AluSx SINE Alu -18 294 1 2030 109 3 0 chr1 128044025 128044310 -154149354 - AluSp SINE Alu -14 299 14 192 246 82 0 chr1 128046273 128046334 -154147330 - L2 LINE L2 -62 3251 3186 2444 55 0 7 chr1 128046391 128046698 -154146966 + AluY SINE Alu 1 305 -6 1957 117 3 17 chr1 128046831 128047131 -154146533 + AluSx SINE Alu 1 296 -16 2041 128 0 10 chr1 128047161 128047467 -154146197 + AluSx SINE Alu 1 303 -9 1476 97 14 37 chr1 128047852 128048069 -154145595 - AluSg/x SINE Alu -15 295 84 2313 116 3 0 chr1 128048337 128048640 -154145024 + AluSp SINE Alu 1 304 -9 1962 135 7 0 chr1 128048708 128049024 -154144640 + AluSx SINE Alu 1 318 0 2539 63 0 3 chr1 128049568 128049868 -154143796 + AluSg SINE Alu 1 299 -11 1845 132 89 0 chr1 128050069 128050349 -154143315 - AluSx SINE Alu -6 306 2 2256 99 7 0 chr1 128050491 128050785 -154142879 - AluSg1 SINE Alu -13 296 1 334 241 27 0 chr1 128051513 128051625 -154142039 + CT-rich Low_complexity Low_complexity 2 116 0 478 215 44 7 chr1 128051670 128051805 -154141859 - L1MB7 LINE L1 -12 6172 6033 663 81 9 72 chr1 128051807 128051918 -154141746 - L1P4 LINE L1 -584 5577 5474 255 277 11 11 chr1 128052140 128052234 -154141430 + L1P LINE L1 4902 4995 -1151 2005 166 0 0 chr1 128052358 128052665 -154140999 + AluSx SINE Alu 3 309 -3 246 143 0 0 chr1 128052756 128052805 -154140859 - LTR66 LTR ERVL -168 442 394 240 260 39 0 chr1 128052896 128052973 -154140691 + HAL1b LINE L1 1252 1331 -17 272 360 37 7 chr1 128053632 128053768 -154139896 - MIR SINE MIR -11 251 112 2016 142 20 0 chr1 128054181 128054477 -154139187 - AluJb SINE Alu -10 302 1 324 365 42 0 chr1 128054554 128054721 -154138943 + MIR SINE MIR 86 259 -3 225 0 0 0 chr1 128055012 128055037 -154138627 + (A)n Simple_repeat Simple_repeat 1 25 0 1890 127 175 37 chr1 128055423 128055778 -154137886 - MER4A LTR ERV1 0 664 261 668 121 0 10 chr1 128055778 128055877 -154137787 - MER4A LTR ERV1 -566 98 1 246 289 39 10 chr1 128055940 128056044 -154137620 + L2 LINE L2 2871 2977 -336 491 164 164 0 chr1 128056181 128056291 -154137373 + Charlie4 DNA MER1_type 1834 1961 0 2042 188 102 67 chr1 128056440 128057020 -154136644 - LTR36 LTR ERV1 -11 600 1 422 342 40 5 chr1 128057603 128057825 -154135839 - MIR SINE MIR -9 253 24 2481 114 94 10 chr1 128058471 128058866 -154134798 + MSTA LTR MaLR 1 428 0 9084 167 33 15 chr1 128058866 128060488 -154133176 + MSTA-int LTR MaLR 1 1651 0 2069 161 109 8 chr1 128060490 128060875 -154132789 + MSTA LTR MaLR 3 426 -2 367 169 15 0 chr1 128061290 128061355 -154132309 + MLT1-int LTR MaLR 7 72 -1299 31 26 0 0 chr1 128062087 128062125 -154131539 + AT_rich Low_complexity Low_complexity 1 38 0 224 211 28 42 chr1 128062163 128062234 -154131430 - L2 LINE L2 0 3313 3244 342 298 8 16 chr1 128062358 128062482 -154131182 - L2 LINE L2 -3 3310 3188 222 323 32 21 chr1 128062517 128062610 -154131054 + L2 LINE L2 2328 2421 -893 253 294 0 33 chr1 128062770 128062862 -154130802 + L2 LINE L2 3223 3311 -2 355 189 0 42 chr1 128062930 128063073 -154130591 + CT-rich Low_complexity Low_complexity 3 139 0 573 293 50 0 chr1 128063496 128063677 -154129987 + MER91A DNA MER1_type 1 190 -6 1987 114 0 88 chr1 128063702 128064044 -154129620 + AluSx SINE Alu 1 312 0 298 259 152 0 chr1 128065299 128065411 -154128253 + MIR SINE MIR 103 231 -31 2067 111 11 4 chr1 128066193 128066495 -154127169 + AluSg SINE Alu 1 304 0 1007 256 121 65 chr1 128067225 128067752 -154125912 - MLT1K LTR MaLR -28 560 4 207 259 19 0 chr1 128068204 128068258 -154125406 + L2 LINE L2 3208 3262 -10 545 42 56 0 chr1 128068750 128068821 -154124843 + MLT1B LTR MaLR 1 75 -315 2714 143 21 36 chr1 128068823 128069251 -154124413 - Tigger1 DNA MER2_type 0 2418 1985 450 0 0 0 chr1 128069251 128069301 -154124363 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 2053 136 0 0 chr1 128069304 128069584 -154124080 - AluSg SINE Alu -30 280 1 2714 143 21 36 chr1 128069584 128069628 -154124036 - Tigger1 DNA MER2_type -435 1983 1949 6288 118 11 18 chr1 128069628 128070926 -154122738 + L1MA1 LINE L1 4475 5780 -522 2066 110 0 7 chr1 128070926 128071234 -154122430 + AluSg1 SINE Alu 1 306 0 6288 118 11 18 chr1 128071234 128071582 -154122082 + L1MA1 LINE L1 5780 6116 -186 2459 94 3 0 chr1 128071582 128071890 -154121774 - AluSp SINE Alu -4 309 1 6288 118 11 18 chr1 128071890 128071969 -154121695 + L1MA1 LINE L1 6116 6194 -108 3803 77 12 4 chr1 128071969 128072478 -154121186 - LTR10D LTR ERV1 0 513 1 1143 108 31 108 chr1 128072488 128072710 -154120954 - Tigger1 DNA MER2_type -455 1963 1759 2010 118 10 3 chr1 128072717 128073022 -154120642 - LTR23 LTR ERV1 -18 419 113 3781 81 12 2 chr1 128073065 128073561 -154120103 - Tigger1 DNA MER2_type -659 1759 1259 427 150 0 0 chr1 128073561 128073621 -154120043 - MER8 DNA MER2_type 0 239 180 2120 165 22 11 chr1 128073621 128073985 -154119679 - Tigger1 DNA MER2_type -2050 368 1 * 2139 130 6 15 chr1 128073985 128074303 -154119361 + MLT1B LTR MaLR 76 390 0 359 275 113 0 chr1 128074333 128074493 -154119171 - MIR SINE MIR -65 197 20 203 319 56 0 chr1 128074601 128074673 -154118991 - MIR SINE MIR -93 115 40 354 178 0 0 chr1 128075402 128075492 -154118172 + (TA)n Simple_repeat Simple_repeat 1 90 0 414 202 10 10 chr1 128076003 128076102 -154117562 - L1ME LINE L1 -302 5819 5721 592 291 23 6 chr1 128077145 128077317 -154116347 - MIR SINE MIR -50 212 38 400 246 63 16 chr1 128077451 128077507 -154116157 - MIR SINE MIR -130 132 80 1518 225 121 24 chr1 128077507 128077969 -154115695 + MLT1J LTR MaLR 1 507 -4 400 246 63 16 chr1 128077969 128078038 -154115626 - MIR SINE MIR -182 80 1 847 202 34 65 chr1 128078080 128078342 -154115322 - MLT1B LTR MaLR -52 338 85 618 196 256 0 chr1 128078337 128078470 -154115194 - MER21B LTR ERV1 -368 495 329 * 196 276 42 124 chr1 128078529 128078746 -154114918 - L2 LINE L2 -33 3239 3041 279 294 63 79 chr1 128079496 128079579 -154114085 - L2 LINE L2 -6 3266 3184 5142 192 77 13 chr1 128079579 128080681 -154112983 + MER69B DNA AcHobo 1 1182 -1344 2119 106 7 13 chr1 128080681 128080983 -154112681 + AluSg SINE Alu 1 300 -10 5142 192 77 13 chr1 128080983 128081032 -154112632 + MER69B DNA AcHobo 1182 1226 0 279 294 63 79 chr1 128081032 128081074 -154112590 - L2 LINE L2 -88 3184 3143 443 314 184 10 chr1 128081089 128081398 -154112266 - L2 LINE L2 -6 3266 2904 217 255 0 0 chr1 128081383 128081430 -154112234 + L2 LINE L2 3222 3268 -4 * 193 247 200 0 chr1 128081565 128081650 -154112014 - L2 LINE L2 -309 2963 2862 2356 89 3 0 chr1 128081872 128082164 -154111500 + AluY SINE Alu 1 293 -18 401 258 154 60 chr1 128082465 128082849 -154110815 + LTR33 LTR ERVL 102 521 0 491 206 66 15 chr1 128083368 128083504 -154110160 + L2 LINE L2 3161 3303 -10 404 290 91 34 chr1 128084082 128084263 -154109401 - MER20B DNA MER1_type -4 215 4 207 315 19 0 chr1 128084539 128084593 -154109071 + L2 LINE L2 3132 3186 -86 29 28 0 0 chr1 128085183 128085219 -154108445 + AT_rich Low_complexity Low_complexity 1 36 0 868 200 89 67 chr1 128086223 128086371 -154107293 + L1ME2 LINE L1 5754 5912 -252 2471 181 44 11 chr1 128086371 128086824 -154106840 - MER70A LTR ERVL -4 468 1 868 200 89 67 chr1 128086824 128086945 -154106719 + L1ME2 LINE L1 5912 6029 -135 666 171 29 14 chr1 128087026 128087166 -154106498 + L1ME2 LINE L1 6013 6154 -10 333 247 25 106 chr1 128087200 128087435 -154106229 + L1MC4 LINE L1 7826 8041 -1 288 337 21 0 chr1 128087531 128087626 -154106038 - MIR SINE MIR -111 151 55 4054 116 15 31 chr1 128087631 128087704 -154105960 - L1MA4A LINE L1 -56 6247 6174 2164 121 0 16 chr1 128087704 128088019 -154105645 - AluSx SINE Alu -2 310 1 4054 116 15 31 chr1 128088019 128088594 -154105070 - L1MA4A LINE L1 -129 6174 5609 783 147 0 49 chr1 128088594 128088607 -154105057 - AluJo SINE Alu -175 137 125 186 43 0 0 chr1 128088607 128088630 -154105034 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 783 147 0 49 chr1 128088630 128088759 -154104905 - AluJo SINE Alu -187 125 2 4669 141 36 14 chr1 128088759 128089862 -154103802 - L1MA4A LINE L1 -695 5608 4477 2094 145 18 3 chr1 128089874 128090211 -154103453 - L1PA16 LINE L1 -4 7600 7259 180 0 0 0 chr1 128090213 128090233 -154103431 + (TTC)n Simple_repeat Simple_repeat 2 21 0 15380 214 28 18 chr1 128090246 128090261 -154103403 - L1PA16 LINE L1 -339 7265 7252 1501 94 64 4 chr1 128090261 128090495 -154103169 - L1MA2 LINE L1 0 6304 6057 15380 214 28 18 chr1 128090495 128091985 -154101679 - L1PA16 LINE L1 -352 7252 5777 2010 146 7 0 chr1 128091985 128092272 -154101392 + AluSx SINE Alu 1 289 -23 15380 214 28 18 chr1 128092272 128094829 -154098835 - L1PA16 LINE L1 -1827 5777 3195 2595 60 0 0 chr1 128094829 128095130 -154098534 - AluY SINE Alu -10 301 1 15380 214 28 18 chr1 128095130 128096153 -154097511 - L1PA16 LINE L1 -4409 3195 2183 322 316 5 54 chr1 128096784 128096989 -154096675 - L1PA16 LINE L1 -5268 2306 2085 1126 343 107 17 chr1 128097015 128097548 -154096116 - L1PA16 LINE L1 -6206 1368 788 15802 172 19 23 chr1 128097558 128098625 -154095039 - L1 LINE L1 -1653 5195 4126 3199 69 11 47 chr1 128098625 128098928 -154094736 + MER57B LTR ERV1 1 284 -150 2170 121 0 25 chr1 128098928 128099243 -154094421 - AluSx SINE Alu -2 310 4 3199 69 11 47 chr1 128099243 128099389 -154094275 + MER57B LTR ERV1 284 434 0 15802 172 19 23 chr1 128099389 128101160 -154092504 - L1 LINE L1 -2722 4126 2351 3739 98 0 23 chr1 128101160 128101498 -154092166 - MER9 LTR ERVK 0 511 188 2641 7 0 0 chr1 128101498 128101778 -154091886 + AluYa5 SINE Alu 26 305 -6 3739 98 0 23 chr1 128101778 128101962 -154091702 - MER9 LTR ERVK -323 188 1 15802 172 19 23 chr1 128101962 128104322 -154089342 - L1 LINE L1 -4497 2351 3 182 62 31 0 chr1 128105323 128105355 -154088309 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2467 70 3 0 chr1 128106045 128106345 -154087319 - AluY SINE Alu -10 301 1 2417 209 52 12 chr1 128106358 128106861 -154086803 - MLT1F LTR MaLR -19 523 1 240 224 0 0 chr1 128106952 128107001 -154086663 - L2 LINE L2 -86 3227 3179 381 284 102 6 chr1 128107065 128107241 -154086423 + L2 LINE L2 2841 3033 -280 345 295 7 36 chr1 128107243 128107382 -154086282 + L2 LINE L2 3161 3295 -18 1863 191 93 7 chr1 128108682 128109112 -154084552 + MLT1C LTR MaLR 1 467 0 1899 109 4 4 chr1 128109527 128109616 -154084048 + AluSx SINE Alu 44 132 -180 2181 96 7 0 chr1 128109616 128109896 -154083768 + AluSp SINE Alu 13 294 -19 1899 109 4 4 chr1 128109896 128110063 -154083601 + AluSx SINE Alu 131 300 -12 189 328 16 16 chr1 128110154 128110215 -154083449 + MIR3 SINE MIR 10 70 -138 7016 143 86 58 chr1 128110698 128111516 -154082148 + L1MCa LINE L1 702 1496 -4930 2042 132 3 7 chr1 128111516 128111811 -154081853 + AluSx SINE Alu 2 295 -17 7016 143 86 58 chr1 128111811 128112360 -154081304 + L1MCa LINE L1 1496 2121 -4305 660 62 0 31 chr1 128112360 128112456 -154081208 + L1PA8 LINE L1 6079 6171 -1 7016 143 86 58 chr1 128112456 128112662 -154081002 + L1MCa LINE L1 2121 2320 -4106 1343 145 0 26 chr1 128112662 128112889 -154080775 + AluJo SINE Alu 87 307 -5 262 0 47 0 chr1 128112891 128112934 -154080730 + L1MCa LINE L1 2322 2366 -4060 * 6077 215 41 58 chr1 128112932 128113628 -154080036 + L1MC1 LINE L1 2550 3257 -2889 2168 126 7 0 chr1 128113628 128113938 -154079726 - AluSx SINE Alu 0 312 1 6077 215 41 58 chr1 128113938 128114500 -154079164 + L1MC1 LINE L1 3257 3767 -2379 1934 189 28 3 chr1 128114500 128114854 -154078810 - MLT1A1 LTR MaLR -1 364 2 6077 215 41 58 chr1 128114854 128115473 -154078191 + L1MC1 LINE L1 3767 4395 -1751 7539 49 5 0 chr1 128115489 128116381 -154077283 - MER11C LTR ERVK 0 1071 176 1797 236 17 28 chr1 128116446 128116747 -154076917 + L1MC1 LINE L1 4411 4705 -1441 2231 125 3 0 chr1 128116747 128117058 -154076606 + AluSx SINE Alu 1 312 0 1797 236 17 28 chr1 128117058 128117299 -154076365 + L1MC1 LINE L1 4705 4947 -1199 1324 163 5 10 chr1 128117306 128117515 -154076149 - AluJb SINE Alu -18 294 87 1423 223 35 29 chr1 128117518 128117768 -154075896 + L1MC1 LINE L1 4942 5198 -948 2195 133 3 0 chr1 128117768 128118070 -154075594 + AluSx SINE Alu 1 303 -9 1423 223 35 29 chr1 128118070 128118273 -154075391 + L1MC1 LINE L1 5198 5398 -748 854 183 6 78 chr1 128118274 128118294 -154075370 + FAM SINE Alu 2 22 -299 2681 109 56 19 chr1 128118294 128118706 -154074958 + MSTA LTR MaLR 1 427 -1 854 183 6 78 chr1 128118706 128118865 -154074799 + FAM SINE Alu 22 168 -17 5239 128 57 38 chr1 128118872 128119035 -154074629 + L1MC1 LINE L1 5388 5546 -787 2004 109 0 0 chr1 128119035 128119291 -154074373 + AluSx SINE Alu 1 256 -56 5239 128 57 38 chr1 128119291 128120038 -154073626 + L1MC1 LINE L1 5546 6315 -18 334 242 61 0 chr1 128120432 128120531 -154073133 + MIR SINE MIR 88 192 -70 189 291 139 0 chr1 128120920 128121006 -154072658 - MIR SINE MIR -73 135 38 301 133 0 0 chr1 128121057 128121102 -154072562 - MLT1L LTR MaLR 0 615 571 343 287 8 33 chr1 128121596 128121718 -154071946 + LTR67 LTR ERVL 428 546 -11 1115 156 51 60 chr1 128121724 128121899 -154071765 + L1MB7 LINE L1 5612 5787 -397 2451 78 3 0 chr1 128121899 128122195 -154071469 + AluSp SINE Alu 9 305 -8 1115 156 51 60 chr1 128122195 128122262 -154071402 + L1MB7 LINE L1 5787 5853 -331 2204 61 4 0 chr1 128122262 128122523 -154071141 + AluY SINE Alu 1 262 -49 1115 156 51 60 chr1 128122523 128122741 -154070923 + L1MB7 LINE L1 5853 6183 -1 408 216 29 58 chr1 128122921 128123008 -154070656 + MER113 DNA MER1_type? 1 84 -437 2495 70 3 0 chr1 128123008 128123310 -154070354 - AluSp SINE Alu -10 303 1 408 216 29 58 chr1 128123310 128123361 -154070303 + MER113 DNA MER1_type? 84 135 -386 6342 84 18 22 chr1 128123362 128124251 -154069413 - L1PA13 LINE L1 -25 6138 5254 1397 153 51 4 chr1 128124252 128124526 -154069138 + L1PA13 LINE L1 4966 5252 -894 2300 105 7 0 chr1 128124532 128124838 -154068826 - AluSx SINE Alu -4 308 1 2027 104 29 0 chr1 128125201 128125480 -154068184 + AluSg SINE Alu 1 287 -23 427 94 16 16 chr1 128125653 128125717 -154067947 + MADE1 DNA Mariner 2 65 -15 355 111 63 0 chr1 128125719 128125782 -154067882 + MADE1 DNA Mariner 14 80 0 3870 128 47 27 chr1 128125922 128126046 -154067618 - MER39 LTR ERV1 -2 705 585 2459 46 23 26 chr1 128126046 128126352 -154067312 + AluY SINE Alu 1 305 -6 3870 128 47 27 chr1 128126352 128126899 -154066765 - MER39 LTR ERV1 -122 585 12 981 189 37 28 chr1 128128347 128128564 -154065100 - MER20 DNA MER1_type 0 219 1 578 192 58 138 chr1 128128569 128128809 -154064855 + MIR SINE MIR 40 260 -2 384 221 8 74 chr1 128128986 128129108 -154064556 + MIR3 SINE MIR 56 169 -39 2148 94 7 3 chr1 128129112 128129398 -154064266 + AluSq SINE Alu 1 287 -26 283 397 55 0 chr1 128129408 128129554 -154064110 + MER5B DNA MER1_type 2 155 -23 2248 88 7 10 chr1 128129555 128129851 -154063813 + AluSq SINE Alu 1 295 -18 318 333 30 12 chr1 128130049 128130214 -154063450 - L3b LINE CR1 -172 1411 1244 301 392 86 6 chr1 128130248 128130587 -154063077 + L2 LINE L2 2530 2895 -419 1974 112 52 0 chr1 128130870 128131199 -154062465 - AluSx SINE Alu 0 343 1 476 243 21 62 chr1 128131443 128131587 -154062077 - MER117 DNA MER1_type -30 167 30 808 230 46 9 chr1 128132604 128132821 -154060843 - MIR SINE MIR -10 252 28 364 309 29 7 chr1 128133547 128133683 -154059981 + G-rich Low_complexity Low_complexity 3 141 0 2266 112 0 10 chr1 128134685 128134998 -154058666 + AluSx SINE Alu 1 310 -2 399 312 128 0 chr1 128135632 128135773 -154057891 - MIR SINE MIR -72 190 32 223 190 71 65 chr1 128136210 128136305 -154057359 - MIR SINE MIR -97 111 37 2384 113 0 0 chr1 128136313 128136623 -154057041 - AluSx SINE Alu -2 310 1 667 317 37 8 chr1 128136834 128137077 -154056587 - MIR SINE MIR 0 262 13 2250 104 10 0 chr1 128138588 128138886 -154054778 + AluSp SINE Alu 1 301 -12 794 183 60 51 chr1 128139074 128139392 -154054272 - MLT1B LTR MaLR -2 388 1 371 244 131 24 chr1 128139487 128139568 -154054096 + MIR SINE MIR 53 124 -138 2208 142 108 3 chr1 128139568 128139955 -154053709 + MSTA LTR MaLR 1 428 0 371 244 131 24 chr1 128139955 128140041 -154053623 + MIR SINE MIR 124 238 -24 1292 111 0 0 chr1 128140256 128140428 -154053236 + AluSq SINE Alu 142 313 0 794 181 268 0 chr1 128140868 128141111 -154052553 + MER5C DNA MER1_type 17 324 0 210 269 35 99 chr1 128141602 128141752 -154051912 + MIR SINE MIR 86 225 -37 2403 77 10 10 chr1 128141752 128142051 -154051613 + AluSg SINE Alu 1 299 -11 210 269 35 99 chr1 128142051 128142071 -154051593 + MIR SINE MIR 225 245 -17 378 0 0 0 chr1 128142953 128142995 -154050669 + (CA)n Simple_repeat Simple_repeat 1 42 0 2205 104 7 14 chr1 128143563 128143860 -154049804 + AluSq SINE Alu 1 295 -18 258 326 188 14 chr1 128144141 128144417 -154049247 - L3 LINE CR1 -24 1553 1230 1689 154 49 31 chr1 128144613 128144899 -154048765 + AluJb SINE Alu 2 292 -20 180 0 0 0 chr1 128145246 128145266 -154048398 + (TG)n Simple_repeat Simple_repeat 2 21 0 2410 72 28 0 chr1 128145469 128145759 -154047905 - AluSc SINE Alu -11 298 1 463 294 20 0 chr1 128146275 128146421 -154047243 - MIR3 SINE MIR 0 208 60 2397 74 0 10 chr1 128146930 128147228 -154046436 + AluSx SINE Alu 1 295 -17 2023 120 9 44 chr1 128147267 128147583 -154046081 + AluSx SINE Alu 1 305 -7 189 107 0 0 chr1 128149327 128149355 -154044309 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 1677 167 7 20 chr1 128149613 128149912 -154043752 - AluJb SINE Alu -6 306 12 306 0 0 0 chr1 128151040 128151074 -154042590 + (CA)n Simple_repeat Simple_repeat 1 34 0 2272 97 7 3 chr1 128151200 128151509 -154042155 - AluSp SINE Alu -3 310 1 420 298 149 25 chr1 128151936 128152097 -154041567 - MER5A DNA MER1_type 0 189 9 2412 77 0 19 chr1 128152415 128152726 -154040938 + AluSx SINE Alu 1 305 -7 2186 112 0 3 chr1 128153046 128153340 -154040324 - AluSg SINE Alu -17 293 1 2197 98 7 3 chr1 128153686 128153982 -154039682 + AluSg SINE Alu 1 297 -13 2294 105 3 0 chr1 128153992 128154296 -154039368 + AluSp SINE Alu 1 305 -8 2056 136 7 0 chr1 128154347 128154634 -154039030 - AluSx SINE Alu -23 289 1 2024 139 3 0 chr1 128154695 128154989 -154038675 + AluSx SINE Alu 3 297 -15 1074 215 8 24 chr1 128155661 128155840 -154037824 - MIR SINE MIR -8 254 79 2482 57 0 0 chr1 128155840 128156137 -154037527 + AluY SINE Alu 3 299 -12 1074 215 8 24 chr1 128156137 128156208 -154037456 - MIR SINE MIR -183 79 8 2242 116 3 0 chr1 128156583 128156894 -154036770 + AluSq SINE Alu 1 312 -1 2278 102 3 0 chr1 128157021 128157314 -154036350 + AluSg SINE Alu 1 294 -16 245 344 108 6 chr1 128157487 128157644 -154036020 - MIR3 SINE MIR -29 179 7 956 178 31 12 chr1 128157805 128157968 -154035696 - FAM SINE Alu -9 166 1 2360 95 0 0 chr1 128158976 128159272 -154034392 + AluSc SINE Alu 1 296 -13 1463 217 17 3 chr1 128159291 128159581 -154034083 + AluJb SINE Alu 1 294 -18 751 180 0 39 chr1 128159711 128159839 -154033825 - FLAM_A SINE Alu -10 123 1 1821 109 0 0 chr1 128160984 128161274 -154032390 + AluSg SINE Alu 44 333 0 22 0 0 0 chr1 128161323 128161345 -154032319 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 128161574 128161606 -154032058 + AT_rich Low_complexity Low_complexity 1 32 0 874 207 0 0 chr1 128162505 128162655 -154031009 - FRAM SINE Alu -16 150 1 817 134 0 0 chr1 128162869 128162981 -154030683 + AluSg/x SINE Alu 176 287 -25 1578 145 24 0 chr1 128163211 128163466 -154030198 + L1PB3 LINE L1 5889 6149 -5 2001 141 10 19 chr1 128163466 128163779 -154029885 + AluSx SINE Alu 1 310 -2 189 0 0 0 chr1 128163790 128163811 -154029853 + (CA)n Simple_repeat Simple_repeat 2 22 0 684 246 49 16 chr1 128164665 128164848 -154028816 - MIR3 SINE MIR -18 190 2 185 149 0 21 chr1 128164953 128164983 -154028681 + (TATATG)n Simple_repeat Simple_repeat 3 33 -15 1982 121 3 3 chr1 128164983 128165272 -154028392 + AluSq SINE Alu 1 289 -24 185 149 0 21 chr1 128165272 128165288 -154028376 + (TATATG)n Simple_repeat Simple_repeat 33 48 0 2138 111 3 0 chr1 128165919 128166207 -154027457 - AluSx SINE Alu -23 289 1 2328 95 0 0 chr1 128166280 128166576 -154027088 + AluSx SINE Alu 3 298 -14 283 286 0 102 chr1 128166715 128166862 -154026802 + L1ME LINE L1 5525 5656 -465 21 36 0 0 chr1 128167011 128167039 -154026625 + AT_rich Low_complexity Low_complexity 1 28 0 848 202 112 135 chr1 128167298 128167881 -154025783 + L1MC4 LINE L1 7460 8011 -31 2194 116 0 0 chr1 128167997 128168300 -154025364 + AluSx SINE Alu 1 303 -9 2442 65 0 3 chr1 128168561 128168853 -154024811 - AluSc SINE Alu -17 292 2 280 111 0 0 chr1 128168960 128169005 -154024659 + MER31A LTR ERV1 441 485 0 722 210 0 0 chr1 128169051 128169170 -154024494 - FLAM_A SINE Alu -14 119 1 228 254 97 18 chr1 128169355 128169469 -154024195 - L1ME4a LINE L1 -14 6107 5985 2287 92 0 0 chr1 128169630 128169934 -154023730 - AluSg SINE Alu 0 306 3 254 333 125 8 chr1 128169935 128170055 -154023609 - MIR SINE MIR -96 166 33 1262 122 17 6 chr1 128170099 128170280 -154023384 + AluSg/x SINE Alu 113 295 -17 3085 204 85 65 chr1 128170284 128171151 -154022513 - MER31A-int LTR ERV1 -4042 894 10 2081 144 126 58 chr1 128171195 128171647 -154022017 - MER31A LTR ERV1 0 485 3 207 239 22 0 chr1 128171962 128172008 -154021656 - L2 LINE L2 -16 3256 3210 180 220 165 0 chr1 128172006 128172097 -154021567 + L2 LINE L2 2729 2834 -480 * 2193 91 7 13 chr1 128172233 128172541 -154021123 + AluY SINE Alu 1 306 -5 848 298 91 21 chr1 128172644 128172983 -154020681 + L2 LINE L2 2937 3299 -14 492 236 121 0 chr1 128172993 128173133 -154020531 - MIR SINE MIR -66 196 40 452 182 172 4 chr1 128173149 128173347 -154020317 - MER5C DNA MER1_type 0 324 5 223 204 56 19 chr1 128173380 128173434 -154020230 - MER5B DNA MER1_type -1 177 122 2068 96 18 0 chr1 128173438 128173718 -154019946 + AluSx SINE Alu 4 288 -24 29 0 0 0 chr1 128173718 128173747 -154019917 + AT_rich Low_complexity Low_complexity 1 29 0 526 73 0 0 chr1 128174704 128174772 -154018892 - L1MA10 LINE L1 -8 6326 6259 1941 152 7 13 chr1 128175263 128175566 -154018098 + AluJb SINE Alu 1 301 -11 1989 123 0 21 chr1 128175568 128175886 -154017778 + AluSg SINE Alu 1 312 0 21 0 0 0 chr1 128176745 128176766 -154016898 + AT_rich Low_complexity Low_complexity 1 21 0 197 294 44 15 chr1 128177035 128177103 -154016561 + MIR SINE MIR 20 89 -173 39 38 0 0 chr1 128177580 128177633 -154016031 + AT_rich Low_complexity Low_complexity 1 53 0 200 322 0 0 chr1 128177676 128177735 -154015929 - L3 LINE CR1 -1 1576 1518 395 324 7 28 chr1 128177817 128177959 -154015705 + MIR SINE MIR 22 160 -102 2301 101 0 0 chr1 128179096 128179394 -154014270 + AluSc SINE Alu 1 298 -11 2236 94 7 0 chr1 128179532 128179818 -154013846 + AluSg SINE Alu 1 288 -22 243 289 154 45 chr1 128180553 128180709 -154012955 + MIR SINE MIR 60 232 -30 1627 17 0 0 chr1 128181016 128181192 -154012472 - L1PA3 LINE L1 0 6155 5980 2299 116 6 0 chr1 128181783 128182094 -154011570 - AluSq SINE Alu 0 313 1 824 163 74 0 chr1 128183579 128183714 -154009950 + AluSq/x SINE Alu 1 145 -168 1652 116 39 0 chr1 128183714 128183947 -154009717 + AluSx SINE Alu 55 296 -16 2490 60 0 3 chr1 128183947 128184247 -154009417 - AluY SINE Alu -12 299 1 28 0 0 0 chr1 128184247 128184275 -154009389 + AT_rich Low_complexity Low_complexity 1 28 0 355 243 47 0 chr1 128184560 128184667 -154008997 - L1MC4a LINE L1 -1879 5929 5818 2242 91 3 44 chr1 128184808 128185126 -154008538 + AluSx SINE Alu 1 305 -7 485 255 42 57 chr1 128185174 128185366 -154008298 - MIR SINE MIR 0 262 74 269 220 102 0 chr1 128186798 128186857 -154006807 - L2 LINE L2 -2 3270 3206 2272 92 0 19 chr1 128187154 128187471 -154006193 + AluSx SINE Alu 1 311 -1 982 192 11 0 chr1 128187673 128187855 -154005809 - AluJb SINE Alu -43 269 86 2190 102 16 3 chr1 128188498 128188802 -154004862 + AluSq SINE Alu 1 308 -5 2284 99 3 3 chr1 128189219 128189531 -154004133 + AluSp SINE Alu 1 312 -1 2594 59 0 0 chr1 128190289 128190592 -154003072 + AluY SINE Alu 2 304 -7 544 266 40 40 chr1 128190650 128190760 -154002904 + MER5B DNA MER1_type 1 110 -68 405 0 0 0 chr1 128190760 128190805 -154002859 + (TTA)n Simple_repeat Simple_repeat 3 47 0 1683 56 0 0 chr1 128190805 128191000 -154002664 - L1PA5 LINE L1 -18 6136 5942 544 266 40 40 chr1 128191000 128191061 -154002603 + MER5B DNA MER1_type 108 173 -5 1402 138 10 125 chr1 128191117 128191157 -154002507 + MSTB LTR MaLR 159 202 -224 2381 90 0 0 chr1 128191157 128191457 -154002207 + AluSx SINE Alu 1 300 -12 689 161 119 0 chr1 128191464 128191582 -154002082 + FLAM_C SINE Alu 2 133 0 1402 138 10 125 chr1 128191582 128191593 -154002071 + MSTB LTR MaLR 208 219 -207 1357 213 31 7 chr1 128191593 128191849 -154001815 + AluJo SINE Alu 1 266 -46 2188 118 0 7 chr1 128191849 128192146 -154001518 + AluSx SINE Alu 3 297 -15 1357 213 31 7 chr1 128192146 128192176 -154001488 + AluJo SINE Alu 266 294 -18 1402 138 10 125 chr1 128192176 128192420 -154001244 + MSTB LTR MaLR 219 426 0 1934 106 4 0 chr1 128192983 128193238 -154000426 + AluSq SINE Alu 1 256 -57 1052 77 8 0 chr1 128193239 128193369 -154000295 + AluSc SINE Alu 60 190 -119 2293 99 10 0 chr1 128193662 128193966 -153999698 + AluSq SINE Alu 1 307 -6 2440 73 3 0 chr1 128194125 128194428 -153999236 + AluY SINE Alu 1 304 -7 2434 77 3 0 chr1 128194484 128194783 -153998881 + AluSg SINE Alu 1 300 -10 1934 102 87 0 chr1 128194787 128195062 -153998602 + AluSg SINE Alu 1 299 -11 2180 94 40 0 chr1 128195101 128195399 -153998265 - AluSg SINE Alu 0 310 1 1717 194 0 9 chr1 128195425 128195740 -153997924 - AluJb SINE Alu 0 312 1 2269 103 3 10 chr1 128195863 128196164 -153997500 + AluSp SINE Alu 1 299 -14 1968 98 0 0 chr1 128196303 128196558 -153997106 + AluSx SINE Alu 40 294 -18 4124 41 0 0 chr1 128196587 128197071 -153996593 + L1PA5 LINE L1 5675 6158 0 206 209 0 76 chr1 128197207 128197312 -153996352 + (TAAA)n Simple_repeat Simple_repeat 4 100 0 2149 110 13 0 chr1 128197361 128197660 -153996004 + AluSq SINE Alu 1 303 -10 2235 120 0 0 chr1 128198497 128198798 -153994866 + AluSx SINE Alu 1 301 -11 2298 109 0 3 chr1 128198806 128199110 -153994554 + AluSq SINE Alu 1 303 -10 2212 90 21 0 chr1 128199579 128199867 -153993797 - AluSp SINE Alu -19 294 1 2447 43 0 7 chr1 128199896 128200176 -153993488 - AluSc SINE Alu -31 278 1 1751 108 0 0 chr1 128203070 128203301 -153990363 - AluSx SINE Alu -81 231 1 2467 90 3 0 chr1 128203321 128203631 -153990033 - AluSp SINE Alu -2 311 1 6649 32 4 36 chr1 128203647 128204471 -153989193 - SVA Other Other 0 1386 590 2473 92 0 0 chr1 128205172 128205478 -153988186 + AluSc SINE Alu 1 306 -3 1533 86 5 5 chr1 128205478 128205675 -153987989 + AluSg/x SINE Alu 108 304 -8 2225 118 0 0 chr1 128206015 128206311 -153987353 - AluSx SINE Alu -16 296 1 1843 158 10 0 chr1 128206315 128206619 -153987045 - AluSx SINE Alu 0 312 6 990 192 11 0 chr1 128206929 128207111 -153986553 - AluJb SINE Alu -43 269 86 2206 99 16 3 chr1 128207754 128208057 -153985607 + AluSq SINE Alu 1 307 -6 2299 97 3 3 chr1 128208474 128208782 -153984882 + AluSp SINE Alu 1 308 -5 2708 40 0 0 chr1 128209544 128209845 -153983819 + AluY SINE Alu 2 302 -9 1240 116 18 44 chr1 128209845 128209953 -153983711 + Tigger2 DNA MER2_type 162 262 -2456 2448 85 7 3 chr1 128209953 128210258 -153983406 + AluSx SINE Alu 1 306 -6 1240 116 18 44 chr1 128210258 128210374 -153983290 + Tigger2 DNA MER2_type 262 380 -2338 1632 91 0 52 chr1 128210374 128210605 -153983059 + AluSx SINE Alu 1 219 -93 751 109 0 9 chr1 128210605 128210715 -153982949 + AluSp/q SINE Alu 188 296 -17 11069 100 11 32 chr1 128210715 128212350 -153981314 + Tigger2 DNA MER2_type 534 2134 -584 351 146 41 49 chr1 128212450 128212575 -153981089 + G-rich Low_complexity Low_complexity 1 123 0 739 50 20 0 chr1 128212784 128212906 -153980758 + AluYa5/8 SINE Alu 184 307 0 2128 113 3 7 chr1 128213004 128213296 -153980368 - AluSx SINE Alu -21 291 1 2270 93 10 22 chr1 128213665 128213978 -153979686 - AluSg SINE Alu -1 309 1 2238 115 3 3 chr1 128214068 128214380 -153979284 - AluSp SINE Alu -1 312 1 2214 108 10 0 chr1 128214380 128214677 -153978987 - AluSg SINE Alu -10 300 1 2166 85 7 33 chr1 128215304 128215610 -153978054 + AluSp SINE Alu 3 300 -13 1918 146 7 0 chr1 128215809 128216119 -153977545 + AluSg SINE Alu 1 312 0 288 274 12 36 chr1 128216205 128216289 -153977375 - MER81 DNA DNA -3 111 30 2294 63 0 0 chr1 128216324 128216594 -153977070 + AluSg1 SINE Alu 26 295 -14 501 198 132 9 chr1 128216633 128216739 -153976925 - FLAM_C SINE Alu -23 120 2 561 324 204 12 chr1 128216798 128217397 -153976267 - L3 LINE CR1 -394 1183 470 387 299 51 35 chr1 128217481 128217528 -153976136 + MARNA DNA Mariner 223 268 -318 884 189 163 71 chr1 128217528 128217704 -153975960 + MSTC LTR MaLR 1 159 -269 2073 92 3 86 chr1 128217704 128217783 -153975881 + AluSg SINE Alu 1 85 -225 2539 55 16 7 chr1 128217783 128218090 -153975574 + AluY SINE Alu 1 310 -1 2073 92 3 86 chr1 128218090 128218169 -153975495 + AluSg SINE Alu 85 169 -141 2408 84 7 0 chr1 128218169 128218477 -153975187 + AluSx SINE Alu 1 310 -2 2073 92 3 86 chr1 128218477 128218653 -153975011 + AluSg SINE Alu 169 308 -2 884 189 163 71 chr1 128218653 128218868 -153974796 + MSTC LTR MaLR 159 428 0 387 299 51 35 chr1 128218868 128219017 -153974647 + MARNA DNA Mariner 268 422 -164 295 278 122 0 chr1 128219127 128219217 -153974447 + MIR SINE MIR 1 101 -161 2585 171 83 5 chr1 128219269 128219703 -153973961 + MER21B LTR ERV1 1 468 -395 1989 131 3 3 chr1 128219705 128219988 -153973676 - AluSx SINE Alu -16 296 14 2581 55 0 7 chr1 128222068 128222375 -153971289 + AluY SINE Alu 1 305 -6 2024 120 3 20 chr1 128222508 128222809 -153970855 + AluSx SINE Alu 1 296 -16 2164 128 0 10 chr1 128222839 128223145 -153970519 + AluSx SINE Alu 1 303 -9 1484 96 14 37 chr1 128223530 128223748 -153969916 - AluSg/x SINE Alu -14 296 84 2297 116 3 0 chr1 128224016 128224317 -153969347 + AluSp SINE Alu 1 302 -11 1962 135 7 0 chr1 128224385 128224701 -153968963 + AluSx SINE Alu 1 318 0 2256 117 0 0 chr1 128225245 128225544 -153968120 + AluSg SINE Alu 1 299 -11 2308 108 0 3 chr1 128225590 128225886 -153967778 - AluSx SINE Alu -17 295 1 2367 88 0 0 chr1 128225893 128226188 -153967476 - AluY SINE Alu -16 295 1 692 173 8 15 chr1 128226661 128226769 -153966895 + AluJo SINE Alu 11 119 -193 180 0 0 0 chr1 128226769 128226789 -153966875 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 692 173 8 15 chr1 128226789 128226813 -153966851 + AluJo SINE Alu 119 142 -170 2376 97 0 3 chr1 128227068 128227368 -153966296 - AluSx SINE Alu -13 299 1 415 104 0 15 chr1 128227783 128227850 -153965814 - Alu SINE Alu -3 307 242 1549 202 30 132 chr1 128228208 128228273 -153965391 + HsTC2a DNA Tc2 1 71 -1829 2356 82 7 0 chr1 128228273 128228567 -153965097 - AluSg SINE Alu -14 296 1 1549 202 30 132 chr1 128228567 128228639 -153965025 + HsTC2a DNA Tc2 71 149 -1751 2351 95 13 0 chr1 128228639 128228944 -153964720 - AluSp SINE Alu -4 309 1 1549 202 30 132 chr1 128228944 128229187 -153964477 + HsTC2a DNA Tc2 149 415 -1485 2224 105 0 35 chr1 128229187 128229500 -153964164 + AluSx SINE Alu 1 302 -10 1549 202 30 132 chr1 128229500 128229591 -153964073 + HsTC2a DNA Tc2 415 394 -1506 2198 102 0 3 chr1 128229591 128229875 -153963789 + AluSq SINE Alu 1 283 -30 1549 202 30 132 chr1 128229875 128230044 -153963620 + HsTC2a DNA Tc2 393 578 -166 2286 117 3 0 chr1 128230340 128230648 -153963016 - AluSq SINE Alu -4 309 1 304 274 9 53 chr1 128230840 128230953 -153962711 - MLT1J2 LTR MaLR 0 450 343 1110 217 26 81 chr1 128231001 128231347 -153962317 + MLT1A1 LTR MaLR 1 327 -38 2013 125 37 3 chr1 128231352 128231648 -153962016 - AluSx SINE Alu -2 310 5 627 130 11 0 chr1 128231648 128231740 -153961924 + AluSq/x SINE Alu 38 130 -183 1669 129 89 0 chr1 128231746 128232017 -153961647 + MLT1A1-int LTR MaLR 278 572 -1163 438 295 139 12 chr1 128232019 128232270 -153961394 - MER93a LTR ERV1 0 402 120 1745 70 0 13 chr1 128232331 128232558 -153961106 - AluY SINE Alu -5 306 83 5026 225 36 24 chr1 128232650 128233778 -153959886 + MLT1A1-int LTR MaLR 594 1735 0 968 223 107 46 chr1 128233785 128234113 -153959551 + MLT1A1 LTR MaLR 16 363 -2 296 240 42 42 chr1 128234235 128234331 -153959333 - MLT1J1 LTR MaLR -285 161 66 315 232 111 0 chr1 128234388 128234487 -153959177 + L2 LINE L2 3204 3313 0 2344 91 0 0 chr1 128234787 128235083 -153958581 + AluSg SINE Alu 1 296 -14 1173 120 43 11 chr1 128236567 128236751 -153956913 - AluSx SINE Alu -2 308 119 1190 48 0 0 chr1 128237084 128237230 -153956434 - L1PA5 LINE L1 -1 6153 6008 916 129 0 36 chr1 128237230 128237370 -153956294 - AluSx SINE Alu -177 135 1 1095 107 82 0 chr1 128237476 128237635 -153956029 + AluSq SINE Alu 137 308 -5 2089 128 27 0 chr1 128237967 128238263 -153955401 - AluSx SINE Alu -8 304 1 2415 88 0 0 chr1 128238269 128238577 -153955087 - AluY SINE Alu -3 308 1 280 297 45 9 chr1 128239020 128239131 -153954533 + L2 LINE L2 3149 3263 -9 2109 108 3 10 chr1 128239133 128239428 -153954236 + AluSq SINE Alu 1 293 -20 2238 116 0 3 chr1 128239618 128239920 -153953744 - AluSg SINE Alu -7 303 3 198 71 0 0 chr1 128240097 128240125 -153953539 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 1610 212 0 3 chr1 128240159 128240461 -153953203 + AluJo SINE Alu 5 305 -7 233 308 183 10 chr1 128240655 128240759 -153952905 + MIR3 SINE MIR 82 203 -5 1826 145 35 3 chr1 128241062 128241351 -153952313 - AluJb SINE Alu -14 298 1 1038 91 0 0 chr1 128241352 128241484 -153952180 - AluSc SINE Alu -176 133 2 2312 90 3 13 chr1 128241484 128241785 -153951879 - AluSp SINE Alu -15 298 1 22 35 0 0 chr1 128241785 128241814 -153951850 + AT_rich Low_complexity Low_complexity 1 29 0 2061 116 10 20 chr1 128241911 128242204 -153951460 - AluSx SINE Alu -22 290 1 2300 108 3 0 chr1 128242621 128242917 -153950747 - AluSg SINE Alu -13 297 1 180 209 0 0 chr1 128243107 128243150 -153950514 + L2 LINE L2 3271 3313 0 502 147 0 0 chr1 128243260 128243335 -153950329 - AluS SINE Alu -15 297 223 933 80 0 0 chr1 128243336 128243449 -153950215 - AluSg SINE Alu -197 113 1 277 213 33 0 chr1 128243994 128244055 -153949609 + MIR SINE MIR 200 262 0 554 148 0 0 chr1 128245040 128245128 -153948536 - FLAM_A SINE Alu -6 136 49 2038 129 7 0 chr1 128245132 128245418 -153948246 - AluSx SINE Alu -24 288 1 1443 195 4 0 chr1 128245423 128245679 -153947985 - AluJo SINE Alu -8 304 48 28 29 0 0 chr1 128245713 128245748 -153947916 + AT_rich Low_complexity Low_complexity 1 35 0 1794 98 8 0 chr1 128245778 128246023 -153947641 - AluSg/x SINE Alu -1 311 65 1693 169 14 17 chr1 128246095 128246385 -153947279 - AluJo SINE Alu -21 291 3 2211 123 0 3 chr1 128246591 128246893 -153946771 - AluSx SINE Alu -11 301 1 2352 84 0 10 chr1 128247067 128247364 -153946300 - AluY SINE Alu -16 295 2 2201 109 6 13 chr1 128247520 128247832 -153945832 - AluSx SINE Alu -2 310 1 2157 109 3 26 chr1 128248787 128249091 -153944573 + AluSq SINE Alu 1 297 -16 1345 32 0 0 chr1 128249436 128249591 -153944073 - L1PA3 LINE L1 -3 6152 5998 1904 120 47 40 chr1 128249761 128250062 -153943602 - AluSx SINE Alu -9 303 1 2359 72 3 7 chr1 128250073 128250366 -153943298 - AluSp SINE Alu -21 292 1 2447 63 0 7 chr1 128250472 128250775 -153942889 - AluY SINE Alu -8 303 3 21 0 0 0 chr1 128250832 128250853 -153942811 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 128251438 128251458 -153942206 + (A)n Simple_repeat Simple_repeat 1 20 0 2028 132 0 14 chr1 128252002 128252317 -153941347 + AluSx SINE Alu 1 311 0 1994 124 10 7 chr1 128252622 128252921 -153940743 - AluSg SINE Alu -10 300 1 748 227 22 11 chr1 128252952 128253137 -153940527 + MIR SINE MIR 75 261 -1 210 191 0 0 chr1 128253197 128253239 -153940425 + GA-rich Low_complexity Low_complexity 1 42 0 1947 89 104 0 chr1 128253508 128253778 -153939886 + AluY SINE Alu 1 298 -13 526 238 90 84 chr1 128253956 128254089 -153939575 + MER34B LTR ERV1 220 351 -214 2072 98 14 3 chr1 128254089 128254375 -153939289 + AluSx SINE Alu 14 302 -10 526 238 90 84 chr1 128254375 128254585 -153939079 + MER34B LTR ERV1 351 565 0 625 339 67 25 chr1 128254682 128255127 -153938537 + L2 LINE L2 2849 3312 -1 205 340 113 0 chr1 128255126 128255267 -153938397 - L3 LINE CR1 -1226 351 195 * 279 0 0 0 chr1 128255278 128255309 -153938355 + (T)n Simple_repeat Simple_repeat 1 31 0 2143 93 0 4 chr1 128255357 128255635 -153938029 - AluSg SINE Alu -33 277 1 375 23 0 0 chr1 128255674 128255718 -153937946 + (TA)n Simple_repeat Simple_repeat 1 44 0 1811 127 8 0 chr1 128255789 128256048 -153937616 - AluSq SINE Alu -52 261 1 25 62 0 16 chr1 128256321 128256363 -153937301 + AT_rich Low_complexity Low_complexity 1 43 -20 522 146 227 18 chr1 128256363 128256473 -153937191 - FLAM_C SINE Alu 0 133 1 25 62 0 16 chr1 128256473 128256494 -153937170 + AT_rich Low_complexity Low_complexity 43 63 0 1464 160 157 0 chr1 128256536 128256804 -153936860 - AluJb SINE Alu -2 310 1 410 181 29 65 chr1 128256919 128257057 -153936607 + AluSc SINE Alu 1 133 -176 764 241 12 0 chr1 128257204 128257366 -153936298 + FAM SINE Alu 1 164 -11 389 262 163 12 chr1 128257398 128257570 -153936094 + L2 LINE L2 2805 3002 -311 308 266 73 24 chr1 128257646 128257770 -153935894 + L2 LINE L2 3171 3300 -13 2711 52 0 0 chr1 128257775 128258084 -153935580 - AluY SINE Alu -2 309 1 2225 115 0 16 chr1 128258084 128258388 -153935276 - AluSg SINE Alu -11 299 1 1573 193 0 4 chr1 128258390 128258655 -153935009 - AluJo SINE Alu -11 301 38 522 295 79 24 chr1 128258655 128258909 -153934755 + L3 LINE CR1 487 754 -823 1300 241 53 44 chr1 128258910 128259321 -153934343 + L1ME3A LINE L1 5735 6149 -21 2195 114 3 0 chr1 128259333 128259622 -153934042 - AluSq SINE Alu -23 290 1 2511 70 0 10 chr1 128259687 128259989 -153933675 - AluY SINE Alu -12 299 1 349 282 66 0 chr1 128260133 128260282 -153933382 + L1ME LINE L1 5457 5619 -502 2351 77 7 0 chr1 128260282 128260568 -153933096 + AluSx SINE Alu 1 288 -24 2136 85 88 0 chr1 128260799 128261082 -153932582 - AluY SINE Alu -3 308 1 210 191 0 0 chr1 128261351 128261393 -153932271 + CT-rich Low_complexity Low_complexity 1 42 0 775 227 22 11 chr1 128261455 128261640 -153932024 - MIR SINE MIR -1 261 75 2127 123 3 3 chr1 128261671 128261971 -153931693 + AluSg SINE Alu 1 300 -10 2054 128 0 14 chr1 128262276 128262591 -153931073 - AluSx SINE Alu 0 311 1 21 0 0 0 chr1 128263739 128263760 -153929904 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 7 chr1 128263817 128264120 -153929544 + AluY SINE Alu 3 303 -8 2359 72 3 7 chr1 128264226 128264519 -153929145 + AluSp SINE Alu 1 292 -21 1833 124 49 42 chr1 128264530 128264837 -153928827 + AluSx SINE Alu 1 309 -3 490 241 19 21 chr1 128264995 128265171 -153928493 + L1PA3 LINE L1 5982 6155 0 2432 81 0 3 chr1 128265531 128265828 -153927836 - AluSc SINE Alu -13 296 1 615 214 0 8 chr1 128265835 128265961 -153927703 - MIR SINE MIR -105 157 33 732 220 58 11 chr1 128266261 128266452 -153927212 - MER31-int LTR ERV1 -546 6991 6792 299 217 17 0 chr1 128266535 128266595 -153927069 - LTR47A LTR ERVL 0 452 392 835 126 0 0 chr1 128266596 128266707 -153926957 + FLAM_C SINE Alu 1 111 -32 1858 158 75 55 chr1 128266727 128267126 -153926538 - LTR47A LTR ERVL -45 407 1 916 200 6 11 chr1 128267161 128267336 -153926328 - MER31-int LTR ERV1 -392 5939 5766 1722 121 114 4 chr1 128267345 128267609 -153926055 - AluSg1 SINE Alu -16 293 1 1790 130 62 28 chr1 128267628 128267981 -153925683 - MER31-int LTR ERV1 -1053 3883 3519 25 0 0 0 chr1 128267981 128268006 -153925658 + AT_rich Low_complexity Low_complexity 1 25 0 1848 176 148 132 chr1 128268396 128268409 -153925255 - MER31-int LTR ERV1 -1484 4847 4836 2205 107 0 7 chr1 128268409 128268708 -153924956 - AluSx SINE Alu -15 297 1 1848 176 148 132 chr1 128268708 128269034 -153924630 - MER31-int LTR ERV1 -1495 4836 4517 2317 110 7 0 chr1 128269034 128269344 -153924320 + AluSp SINE Alu 1 312 -1 1848 176 148 132 chr1 128269344 128269639 -153924025 - MER31-int LTR ERV1 -1814 4517 4228 2025 143 0 3 chr1 128269639 128269940 -153923724 + AluSx SINE Alu 1 300 -12 1848 176 148 132 chr1 128269940 128270003 -153923661 - MER31-int LTR ERV1 -2103 4228 4168 1766 148 53 3 chr1 128270003 128270287 -153923377 + AluSx SINE Alu 1 298 -14 1848 176 148 132 chr1 128270287 128270440 -153923224 - MER31-int LTR ERV1 -2163 4168 4019 2222 116 3 7 chr1 128270440 128270750 -153922914 + AluSp SINE Alu 1 309 -4 1848 176 148 132 chr1 128270750 128270815 -153922849 - MER31-int LTR ERV1 -2312 4019 2510 694 196 36 0 chr1 128270908 128271046 -153922618 + AluSq/x SINE Alu 3 145 -167 4341 128 22 16 chr1 128271054 128271733 -153921931 - LTR8 LTR ERV1 -8 683 1 913 158 20 0 chr1 128271733 128271879 -153921785 + AluJb SINE Alu 142 290 -22 3942 164 104 32 chr1 128271941 128272929 -153920735 + pTR5 LTR ERV1 744 2021 -417 364 257 40 0 chr1 128272929 128273030 -153920634 + LTR30 LTR ERV1 539 643 -79 1731 64 45 0 chr1 128273035 128273255 -153920409 + LTR12 LTR ERV1 485 714 0 394 205 0 4 chr1 128273388 128273462 -153920202 + AluS SINE Alu 1 64 -239 2059 127 0 0 chr1 128273473 128273757 -153919907 - LTR17 LTR ERV1 -49 731 448 517 163 10 31 chr1 128273834 128273932 -153919732 - AluSx SINE Alu -17 293 198 1112 87 0 0 chr1 128273932 128274070 -153919594 - AluSx SINE Alu -174 138 1 1381 168 48 51 chr1 128274235 128274806 -153918858 - LTR49-int LTR ERV1 -2749 2122 884 258 180 0 0 chr1 128274852 128274913 -153918751 + T-rich Low_complexity Low_complexity 1 61 0 6386 73 6 33 chr1 128274916 128275923 -153917741 - SVA Other Other -629 1385 549 2763 90 38 90 chr1 128276076 128276578 -153917086 - SVA Other Other -518 868 393 21 36 0 0 chr1 128276629 128276657 -153917007 + GC_rich Low_complexity Low_complexity 1 28 0 447 242 21 13 chr1 128276749 128276872 -153916792 - LTR49-int LTR ERV1 -3223 2723 2551 647 218 27 99 chr1 128276982 128277276 -153916388 - LTR49-int LTR ERV1 -6700 837 565 1639 203 14 7 chr1 128277278 128277568 -153916096 + AluJo SINE Alu 1 292 -20 1013 82 0 0 chr1 128277632 128277754 -153915910 + AluSp SINE Alu 4 125 -188 572 214 21 14 chr1 128277888 128278028 -153915636 - LTR49-int LTR ERV1 -7068 469 329 * 668 315 88 13 chr1 128278001 128278306 -153915358 - LTR49-int LTR ERV1 -4092 2239 1912 2222 146 85 28 chr1 128278322 128278436 -153915228 - LTR54B LTR ERV1 -13 485 379 2446 90 0 10 chr1 128278436 128278748 -153914916 - AluSc SINE Alu 0 309 1 2222 146 85 28 chr1 128278748 128279092 -153914572 - LTR54B LTR ERV1 -119 379 1 1031 241 28 52 chr1 128279092 128279282 -153914382 + MER21B LTR ERV1 469 651 -212 2259 110 0 3 chr1 128279282 128279582 -153914082 - AluSx SINE Alu -13 299 1 1031 241 28 52 chr1 128279582 128279682 -153913982 + MER21B LTR ERV1 651 752 -111 416 204 32 11 chr1 128279826 128279919 -153913745 - LTR49-int LTR ERV1 -3686 2645 2551 647 218 27 99 chr1 128280057 128280351 -153913313 - LTR49-int LTR ERV1 -6700 837 565 1639 203 14 7 chr1 128280353 128280643 -153913021 + AluJo SINE Alu 1 292 -20 2232 105 10 0 chr1 128280707 128281011 -153912653 + AluSp SINE Alu 4 310 -3 2296 113 3 0 chr1 128281239 128281550 -153912114 - AluSp SINE Alu -1 312 1 572 214 21 14 chr1 128281649 128281789 -153911875 - LTR49-int LTR ERV1 -7068 469 329 362 355 40 7 chr1 128281762 128281914 -153911750 - LTR49-int LTR ERV1 -4092 2239 2083 * 2222 146 85 28 chr1 128282083 128282197 -153911467 - LTR54B LTR ERV1 -13 485 379 2446 90 0 10 chr1 128282197 128282509 -153911155 - AluSc SINE Alu 0 309 1 2222 146 85 28 chr1 128282509 128282853 -153910811 - LTR54B LTR ERV1 -119 379 1 1289 226 46 59 chr1 128282853 128283050 -153910614 + MER21B LTR ERV1 469 660 -203 2224 110 0 7 chr1 128283050 128283351 -153910313 - AluSx SINE Alu -13 299 1 1289 226 46 59 chr1 128283351 128283542 -153910122 + MER21B LTR ERV1 660 852 -11 5281 74 24 0 chr1 128284290 128284962 -153908702 - LTR8 LTR ERV1 -3 688 1 377 180 131 0 chr1 128284969 128285091 -153908573 + LTR37A LTR ERV1 289 426 0 695 251 86 0 chr1 128285116 128285303 -153908361 - MIR SINE MIR -6 256 54 258 259 44 59 chr1 128287136 128287271 -153906393 + L2 LINE L2 3180 3312 -1 470 278 46 0 chr1 128287319 128287470 -153906194 + L2 LINE L2 3155 3312 -1 2281 101 19 0 chr1 128287525 128287832 -153905832 - AluSp SINE Alu 0 313 1 2340 95 7 0 chr1 128288477 128288773 -153904891 - AluSp SINE Alu -15 298 1 1332 201 71 19 chr1 128288855 128288988 -153904676 + AluJb SINE Alu 1 126 -226 1491 126 40 5 chr1 128288988 128289211 -153904453 + AluSg/x SINE Alu 66 296 -16 1332 201 71 19 chr1 128289211 128289415 -153904249 + AluJb SINE Alu 126 352 0 249 177 32 32 chr1 128289529 128289591 -153904073 - L1ME LINE L1 -528 5593 5532 282 214 29 58 chr1 128290099 128290202 -153903462 - MIR SINE MIR -69 193 94 358 116 13 9 chr1 128290665 128290732 -153902932 + Alu SINE Alu 1 47 -255 449 197 162 26 chr1 128291608 128291725 -153901939 - Tigger1 DNA MER2_type -1 2417 2285 2378 98 3 0 chr1 128291725 128292030 -153901634 - AluSx SINE Alu -5 307 2 562 301 58 0 chr1 128294997 128295170 -153898494 - MIR SINE MIR -75 187 5 264 154 0 39 chr1 128295231 128295283 -153898381 - MER103 DNA DNA -80 86 37 748 276 143 16 chr1 128295436 128296137 -153897527 - L2 LINE L2 -2 3270 2480 385 261 108 23 chr1 128296333 128296509 -153897155 + MIR SINE MIR 72 262 0 2438 76 13 0 chr1 128296581 128296883 -153896781 + AluSq SINE Alu 4 309 -4 2191 118 7 0 chr1 128297009 128297305 -153896359 + AluSx SINE Alu 1 298 -14 405 0 0 0 chr1 128298415 128298460 -153895204 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 457 264 173 32 chr1 128298522 128298742 -153894922 + MIR SINE MIR 12 262 0 1637 196 3 20 chr1 128298875 128299181 -153894483 + AluJo SINE Alu 1 301 -11 239 274 76 85 chr1 128299314 128299362 -153894302 + L1ME4a LINE L1 4533 4580 -1566 321 0 0 24 chr1 128299362 128299403 -153894261 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2340 56 0 14 chr1 128299403 128299690 -153893974 - AluY SINE Alu -28 283 1 239 274 76 85 chr1 128299690 128300086 -153893578 + L1ME4a LINE L1 4578 4974 -1172 434 252 163 67 chr1 128300126 128300439 -153893225 + L2 LINE L2 2971 3313 0 1108 82 0 0 chr1 128300547 128300682 -153892982 + AluSq/x SINE Alu 1 135 -178 2047 109 11 0 chr1 128300682 128300999 -153892665 + AluSq SINE Alu 1 320 0 2357 81 7 13 chr1 128301214 128301523 -153892141 + AluY SINE Alu 1 307 -4 451 262 143 34 chr1 128301528 128301765 -153891899 + L1ME4a LINE L1 5422 5684 -437 304 259 129 14 chr1 128301780 128301927 -153891737 + L1ME4a LINE L1 5880 6043 -78 424 269 21 42 chr1 128302798 128302991 -153890673 - L1MEc LINE L1 -5069 1327 1139 444 177 73 0 chr1 128303074 128303170 -153890494 - Charlie2a DNA MER1_type -1295 1567 1465 1863 116 0 0 chr1 128303220 128303471 -153890193 + AluSx SINE Alu 1 251 -61 1774 154 0 39 chr1 128303511 128303848 -153889816 + AluJb SINE Alu 1 312 0 943 157 81 33 chr1 128303849 128304059 -153889605 + AluJb SINE Alu 83 302 -10 187 327 119 20 chr1 128305222 128305323 -153888341 + L2 LINE L2 3152 3262 -10 645 180 41 33 chr1 128306348 128306470 -153887194 + FLAM_A SINE Alu 1 123 -10 1564 197 3 7 chr1 128306483 128306767 -153886897 + AluJb SINE Alu 1 283 -29 2022 185 60 48 chr1 128306839 128307336 -153886328 + MER21B LTR ERV1 408 861 -2 2222 105 20 0 chr1 128307644 128307938 -153885726 - AluSx SINE Alu -12 300 1 2264 118 3 0 chr1 128308283 128308588 -153885076 + AluSx SINE Alu 1 306 -6 1065 214 118 55 chr1 128309055 128309172 -153884492 + L1ME1 LINE L1 4078 4186 -1960 1406 213 60 8 chr1 128309172 128309440 -153884224 + AluJo SINE Alu 1 282 -30 2133 96 31 7 chr1 128309440 128309731 -153883933 + AluSg SINE Alu 1 298 -12 1065 214 118 55 chr1 128309731 128310052 -153883612 + L1ME1 LINE L1 4185 4545 -1601 2192 66 56 14 chr1 128310106 128310392 -153883272 + AluSg SINE Alu 1 298 -12 2400 208 121 10 chr1 128310410 128311067 -153882597 + L1ME1 LINE L1 5221 5950 -216 1270 160 50 14 chr1 128311069 128311288 -153882376 + MER46A DNA MER2_type 1 227 -9 452 236 55 9 chr1 128311288 128311398 -153882266 + L1ME1 LINE L1 5956 6070 -96 301 127 70 28 chr1 128311399 128311470 -153882194 + L1MA10 LINE L1 6258 6331 -3 213 238 0 32 chr1 128311591 128311654 -153882010 + GA-rich Low_complexity Low_complexity 2 62 0 415 284 88 83 chr1 128311765 128312051 -153881613 + L1MEd LINE L1 652 935 -5184 2110 112 25 0 chr1 128312051 128312336 -153881328 + AluSx SINE Alu 1 292 -20 415 284 88 83 chr1 128312336 128312638 -153881026 + L1MEd LINE L1 935 1243 -4876 424 269 21 42 chr1 128312722 128312915 -153880749 - L1MEc LINE L1 -5069 1327 1139 444 177 73 0 chr1 128312998 128313094 -153880570 - Charlie2a DNA MER1_type -1295 1567 1465 1899 118 96 0 chr1 128313144 128313424 -153880240 + AluSx SINE Alu 1 307 -5 328 222 46 37 chr1 128313432 128313540 -153880124 - Charlie2b DNA MER1_type -2118 664 556 438 305 62 18 chr1 128313541 128313767 -153879897 - Charlie2b DNA MER1_type -2473 309 74 2272 89 3 19 chr1 128315797 128316110 -153877554 - AluSg SINE Alu -2 308 1 1891 143 0 33 chr1 128316125 128316454 -153877210 + L1M2 LINE L1 5478 5795 -517 1971 110 4 0 chr1 128316460 128316723 -153876941 - AluSx SINE Alu -47 265 2 256 177 48 0 chr1 128316723 128316785 -153876879 + MER69 DNA AcHobo 2358 2422 -104 691 129 57 29 chr1 128316866 128316959 -153876705 - Charlie1 DNA MER1_type -393 2368 2268 1723 149 40 17 chr1 128316959 128317261 -153876403 - AluJb SINE Alu -3 309 1 691 129 57 29 chr1 128317261 128317307 -153876357 - Charlie1 DNA MER1_type -493 2268 2225 233 263 0 35 chr1 128317309 128317366 -153876298 - Charlie1 DNA MER1_type -2706 55 1 24 0 0 0 chr1 128317626 128317650 -153876014 + AT_rich Low_complexity Low_complexity 1 24 0 2161 113 46 3 chr1 128317801 128318127 -153875537 + L1PA16 LINE L1 5825 6164 -2 2497 76 0 3 chr1 128318199 128318503 -153875161 - AluSp SINE Alu -10 303 1 2286 102 0 3 chr1 128318898 128319192 -153874472 - AluSq SINE Alu -20 293 1 598 165 113 9 chr1 128320166 128320281 -153873383 + AluSc SINE Alu 107 233 -76 2460 89 0 0 chr1 128320426 128320729 -153872935 + AluSx SINE Alu 1 303 -9 348 227 0 23 chr1 128320873 128320961 -153872703 - L2 LINE L2 -82 3231 3146 1755 141 35 3 chr1 128321089 128321379 -153872285 + AluJb SINE Alu 1 299 -13 370 272 191 81 chr1 128321410 128321625 -153872039 - L1ME4a LINE L1 -18 6103 5913 2008 132 7 0 chr1 128321625 128321913 -153871751 - AluSx SINE Alu -22 290 1 1950 149 13 0 chr1 128321915 128322216 -153871448 - AluSx SINE Alu -7 305 1 370 272 191 81 chr1 128322216 128322314 -153871350 - L1ME4a LINE L1 -208 5913 5827 2502 75 0 0 chr1 128322314 128322620 -153871044 + AluSx SINE Alu 1 306 -6 370 272 191 81 chr1 128322620 128322634 -153871030 - L1ME4a LINE L1 -294 5827 5816 2203 104 7 0 chr1 128322634 128322931 -153870733 + AluSp SINE Alu 3 301 -12 370 272 191 81 chr1 128322931 128323143 -153870521 - L1ME4a LINE L1 -305 5816 5499 512 116 0 14 chr1 128323212 128323281 -153870383 + AluS SINE Alu 2 69 -243 187 31 62 0 chr1 128323455 128323487 -153870177 + T-rich Low_complexity Low_complexity 2 35 0 1933 106 4 0 chr1 128323489 128323744 -153869920 - AluSx SINE Alu -28 284 29 287 103 0 0 chr1 128324818 128324857 -153868807 - U5 snRNA snRNA -50 66 28 2162 97 0 7 chr1 128324857 128325136 -153868528 + AluSq SINE Alu 2 278 -35 247 163 0 0 chr1 128325161 128325204 -153868460 - U5 snRNA snRNA -73 43 1 22 56 0 0 chr1 128325368 128325404 -153868260 + AT_rich Low_complexity Low_complexity 1 36 0 1983 117 17 0 chr1 128325430 128325720 -153867944 - AluSx SINE Alu -17 295 1 2088 65 0 84 chr1 128325743 128326051 -153867613 - AluY SINE Alu -5 306 25 1806 82 5 0 chr1 128326051 128326268 -153867396 - AluSp SINE Alu -93 220 1 1587 216 83 26 chr1 128326521 128326622 -153867042 - Charlie4a DNA MER1_type -1453 508 414 829 113 15 53 chr1 128326622 128326755 -153866909 - FLAM_C SINE Alu -3 130 3 1587 216 83 26 chr1 128326755 128327121 -153866543 - Charlie4a DNA MER1_type -1547 414 14 1530 160 19 19 chr1 128327637 128327905 -153865759 + AluJo SINE Alu 4 271 -41 51 17 0 0 chr1 128327905 128327963 -153865701 + AT_rich Low_complexity Low_complexity 1 58 0 1310 188 132 117 chr1 128328766 128329183 -153864481 + L1MC5 LINE L1 7049 7483 -478 586 72 0 60 chr1 128329183 128329266 -153864398 - MADE1 DNA Mariner 0 80 3 1310 188 132 117 chr1 128329266 128329592 -153864072 + L1MC5 LINE L1 7483 7803 -158 187 265 302 41 chr1 128329828 128330073 -153863591 + L2 LINE L2 2434 2742 -572 2067 126 0 26 chr1 128330073 128330382 -153863282 - AluSx SINE Alu -11 301 1 1313 200 79 15 chr1 128330464 128330594 -153863070 + AluJb SINE Alu 1 121 -221 1483 133 40 4 chr1 128330594 128330820 -153862844 + AluSg SINE Alu 61 294 -16 1313 200 79 15 chr1 128330820 128331014 -153862650 + AluJb SINE Alu 121 342 0 252 177 32 32 chr1 128331128 128331190 -153862474 - L1ME LINE L1 -528 5593 5532 313 214 29 58 chr1 128331698 128331801 -153861863 - MIR SINE MIR -69 193 94 351 116 13 9 chr1 128332264 128332331 -153861333 + Alu SINE Alu 1 47 -256 455 197 162 26 chr1 128333207 128333324 -153860340 - Tigger1 DNA MER2_type -1 2417 2285 2363 98 3 0 chr1 128333324 128333629 -153860035 - AluSx SINE Alu -5 307 2 181 327 30 40 chr1 128336373 128336474 -153857190 - MIR3 SINE MIR -24 184 85 614 301 58 0 chr1 128336596 128336769 -153856895 - MIR SINE MIR -75 187 5 268 154 0 39 chr1 128336830 128336882 -153856782 - MER103 DNA DNA -80 86 37 882 276 145 16 chr1 128337035 128337742 -153855922 - L2 LINE L2 -2 3270 2471 456 257 109 17 chr1 128337931 128338106 -153855558 + MIR SINE MIR 72 262 0 2422 76 13 0 chr1 128338178 128338480 -153855184 + AluSq SINE Alu 4 309 -4 2169 118 7 0 chr1 128338606 128338902 -153854762 + AluSx SINE Alu 1 298 -14 441 0 0 0 chr1 128340012 128340061 -153853603 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 526 264 173 32 chr1 128340123 128340343 -153853321 + MIR SINE MIR 12 262 0 1628 196 3 20 chr1 128340476 128340782 -153852882 + AluJo SINE Alu 1 301 -11 239 274 76 85 chr1 128340915 128340963 -153852701 + L1ME4a LINE L1 4533 4580 -1566 2340 56 0 14 chr1 128340963 128341291 -153852373 - AluY SINE Alu 0 324 1 239 274 76 85 chr1 128341291 128341687 -153851977 + L1ME4a LINE L1 4580 4974 -1172 434 252 163 67 chr1 128341727 128342040 -153851624 + L2 LINE L2 2971 3313 0 1108 82 0 0 chr1 128342148 128342283 -153851381 + AluSq/x SINE Alu 1 135 -177 2047 109 11 0 chr1 128342283 128342600 -153851064 + AluSq SINE Alu 1 320 0 2357 81 7 13 chr1 128342815 128343124 -153850540 + AluY SINE Alu 1 307 -4 451 262 143 34 chr1 128343129 128343366 -153850298 + L1ME4a LINE L1 5422 5684 -437 304 259 129 14 chr1 128343381 128343528 -153850136 + L1ME4a LINE L1 5880 6043 -78 2338 91 0 7 chr1 128344449 128344758 -153848906 + AluSx SINE Alu 1 307 -5 895 86 9 0 chr1 128344880 128344996 -153848668 - AluY SINE Alu -22 289 173 2062 88 66 0 chr1 128345006 128345280 -153848384 + AluSp SINE Alu 5 296 -17 421 113 32 0 chr1 128346470 128346532 -153847132 - MSTB LTR MaLR 0 426 363 216 119 71 0 chr1 128346537 128346579 -153847085 + A-rich Low_complexity Low_complexity 4 48 0 899 143 95 0 chr1 128346706 128346853 -153846811 + AluSg/x SINE Alu 142 302 -7 712 212 88 24 chr1 128347147 128347317 -153846347 - AluJb SINE Alu -24 288 108 1985 136 3 10 chr1 128347336 128347637 -153846027 - AluJb SINE Alu -13 299 1 193 259 0 35 chr1 128347976 128348034 -153845630 + MIR SINE MIR 159 214 -48 1678 124 41 8 chr1 128348268 128348510 -153845154 + AluSx SINE Alu 2 251 -61 1773 154 0 39 chr1 128348550 128348840 -153844824 + AluJb SINE Alu 1 280 -32 235 0 0 0 chr1 128348840 128348866 -153844798 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1773 154 0 39 chr1 128348866 128348887 -153844777 + AluJb SINE Alu 280 300 -12 923 182 77 29 chr1 128348888 128349097 -153844567 + AluJb SINE Alu 83 301 -11 2245 121 0 3 chr1 128349303 128349617 -153844047 + AluSq SINE Alu 1 313 0 454 19 0 0 chr1 128349665 128349996 -153843668 + AluSx SINE Alu 2 332 0 379 293 113 5 chr1 128351051 128351240 -153842424 + MIR SINE MIR 24 227 -35 435 284 119 26 chr1 128351411 128351605 -153842059 - MIR SINE MIR -32 230 19 192 298 0 0 chr1 128351713 128351760 -153841904 - L2 LINE L2 -86 3227 3181 218 196 0 22 chr1 128351776 128351822 -153841842 - MIR SINE MIR -5 257 213 2154 122 3 0 chr1 128351920 128352215 -153841449 + AluSx SINE Alu 1 296 -16 2074 116 36 10 chr1 128352217 128352518 -153841146 + AluSg SINE Alu 1 309 -1 291 148 0 0 chr1 128352519 128352573 -153841091 + L1 LINE L1 4906 4959 -1187 1866 132 3 56 chr1 128352865 128353168 -153840496 - AluSx SINE Alu -17 295 9 250 150 50 200 chr1 128353175 128353335 -153840329 - L1M4 LINE L1 -1432 4714 4579 1624 197 89 11 chr1 128353343 128353713 -153839951 - MER21B LTR ERV1 0 863 465 333 0 0 0 chr1 128353716 128353753 -153839911 + (TG)n Simple_repeat Simple_repeat 2 38 0 1995 137 10 0 chr1 128353763 128354055 -153839609 - AluSx SINE Alu -17 295 1 2126 65 0 84 chr1 128354078 128354386 -153839278 - AluY SINE Alu -5 306 25 1830 82 5 0 chr1 128354384 128354603 -153839061 - AluSp SINE Alu -93 220 1 * 1448 221 84 19 chr1 128354856 128354954 -153838710 - Charlie4a DNA MER1_type -1453 508 418 805 118 15 52 chr1 128354954 128355090 -153838574 - FLAM_C SINE Alu 0 133 3 1448 221 84 19 chr1 128355090 128355456 -153838208 - Charlie4a DNA MER1_type -1543 418 14 1564 160 19 19 chr1 128355972 128356240 -153837424 + AluJo SINE Alu 4 271 -41 51 17 0 0 chr1 128356240 128356298 -153837366 + AT_rich Low_complexity Low_complexity 1 58 0 1110 194 93 122 chr1 128357132 128357518 -153836146 + L1MC5 LINE L1 7112 7469 -492 556 72 0 60 chr1 128357518 128357601 -153836063 - MADE1 DNA Mariner 0 80 3 1110 194 93 122 chr1 128357601 128357927 -153835737 + L1MC5 LINE L1 7469 7803 -158 2164 104 0 27 chr1 128358408 128358707 -153834957 - AluSx SINE Alu -11 301 11 398 291 64 117 chr1 128358934 128359309 -153834355 + L2 LINE L2 2919 3273 -40 338 290 53 37 chr1 128359611 128359773 -153833891 + MIR3 SINE MIR 57 218 -18 24 32 0 0 chr1 128361612 128361643 -153832021 + GC_rich Low_complexity Low_complexity 1 31 0 397 272 115 11 chr1 128361960 128362136 -153831528 + MIR SINE MIR 17 205 -57 434 278 129 26 chr1 128362328 128362522 -153831142 - MIR SINE MIR -32 230 17 217 270 135 32 chr1 128362568 128362694 -153830970 - L2 LINE L2 -14 3299 3161 202 217 0 22 chr1 128362685 128362731 -153830933 - MIR SINE MIR -5 257 213 * 301 258 45 0 chr1 128362800 128362866 -153830798 - MIR SINE MIR -75 187 119 552 294 55 51 chr1 128363244 128363434 -153830230 + MIR SINE MIR 6 194 -68 1984 141 34 0 chr1 128363434 128363725 -153829939 + AluSx SINE Alu 1 301 -11 2274 99 0 30 chr1 128363728 128364031 -153829633 + AluSg SINE Alu 3 296 -14 552 294 55 51 chr1 128364031 128364071 -153829593 + MIR SINE MIR 195 241 -21 277 284 21 11 chr1 128364087 128364182 -153829482 + MER69 DNA AcHobo 27 122 -1104 * 324 218 11 46 chr1 128364181 128364268 -153829396 + MER69 DNA AcHobo 2438 2521 -5 955 122 0 34 chr1 128364319 128364467 -153829197 + FLAM_C SINE Alu 1 143 0 479 104 38 1 chr1 128364479 128364719 -153828945 + AluSp SINE Alu 1 281 -32 249 33 0 0 chr1 128364719 128364749 -153828915 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2301 79 38 0 chr1 128364749 128365040 -153828624 + AluSg SINE Alu 1 302 -8 350 271 61 48 chr1 128365042 128365196 -153828468 + MIR SINE MIR 55 214 -48 415 306 28 7 chr1 128365424 128365568 -153828096 - MIR3 SINE MIR -4 204 58 3008 147 94 56 chr1 128366097 128366582 -153827082 - L1MA6 LINE L1 -6 6294 5774 2436 103 0 0 chr1 128366582 128366892 -153826772 - AluSx SINE Alu -2 310 1 3008 147 94 56 chr1 128366892 128367088 -153826576 - L1MA6 LINE L1 -526 5774 5587 917 125 13 0 chr1 128367091 128367243 -153826421 + L1 LINE L1 4855 5008 -1138 * 1013 177 0 15 chr1 128367240 128367324 -153826340 - L1MA6 LINE L1 -721 5579 5495 194 0 39 0 chr1 128367324 128367350 -153826314 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2102 120 4 0 chr1 128367358 128367633 -153826031 - AluSx SINE Alu -30 282 7 1013 177 0 15 chr1 128367633 128367742 -153825922 - L1MA6 LINE L1 -812 5488 5380 746 97 0 0 chr1 128367744 128367837 -153825827 - AluS SINE Alu -214 99 7 4725 148 23 39 chr1 128367841 128368676 -153824988 - L1M2 LINE L1 -744 5402 4555 2449 78 7 0 chr1 128368676 128368984 -153824680 - AluSp SINE Alu -3 310 1 4725 148 23 39 chr1 128368984 128369219 -153824445 - L1M2 LINE L1 -1591 4555 4438 743 43 0 0 chr1 128369219 128369312 -153824352 + L1PA4 LINE L1 6060 6152 -3 4725 148 23 39 chr1 128369312 128369391 -153824273 - L1M2 LINE L1 -1708 4438 4359 21 0 0 0 chr1 128369446 128369467 -153824197 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr1 128370040 128370068 -153823596 + (CA)n Simple_repeat Simple_repeat 1 28 0 2016 86 11 8 chr1 128370122 128370390 -153823274 - AluSx SINE Alu -33 279 11 2380 92 0 0 chr1 128370568 128370860 -153822804 - AluSq SINE Alu -21 292 1 673 212 67 80 chr1 128371008 128371273 -153822391 + MER39 LTR ERV1 1 445 -262 * 1210 193 52 56 chr1 128371242 128371774 -153821890 + LTR48 LTR ERV1 53 775 -12 483 204 104 99 chr1 128371789 128372010 -153821654 + MER39 LTR ERV1 474 695 -12 1954 138 3 33 chr1 128372233 128372538 -153821126 + AluSx SINE Alu 1 296 -16 338 269 10 29 chr1 128372550 128372654 -153821010 - MIR SINE MIR -65 143 42 1030 148 60 145 chr1 128372943 128373008 -153820656 + MLT1F1 LTR MaLR 1 70 -497 2369 103 3 0 chr1 128373008 128373309 -153820355 + AluSp SINE Alu 1 302 -11 1030 148 60 145 chr1 128373309 128373338 -153820326 + MLT1F1 LTR MaLR 70 100 -467 2291 120 0 3 chr1 128373338 128373647 -153820017 + AluSx SINE Alu 1 308 -4 1030 148 60 145 chr1 128373647 128373735 -153819929 + MLT1F1 LTR MaLR 100 194 -373 234 0 0 0 chr1 128373735 128373761 -153819903 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr1 128373760 128373790 -153819874 + (GA)n Simple_repeat Simple_repeat 1 30 0 1030 148 60 145 chr1 128373761 128373937 -153819727 + MLT1F1 LTR MaLR 194 304 -263 2330 101 0 7 chr1 128373954 128374262 -153819402 + AluSg SINE Alu 5 310 0 5054 94 12 20 chr1 128374293 128374398 -153819266 + L1PA14 LINE L1 5386 5490 -671 2035 130 10 0 chr1 128374398 128374719 -153818945 + AluSg SINE Alu 1 310 0 5054 94 12 20 chr1 128374719 128375392 -153818272 + L1PA14 LINE L1 5490 6157 -4 1608 246 15 56 chr1 128375392 128375665 -153817999 - LTR55 LTR ERV -34 514 272 2477 83 0 0 chr1 128375665 128375965 -153817699 - AluY SINE Alu -10 301 2 1608 246 15 56 chr1 128375965 128376227 -153817437 - LTR55 LTR ERV -276 272 1 680 164 63 25 chr1 128376241 128376400 -153817264 + MLT1F1 LTR MaLR 360 524 -43 26 0 0 0 chr1 128376637 128376663 -153817001 + AT_rich Low_complexity Low_complexity 1 26 0 184 237 85 34 chr1 128377134 128377193 -153816471 + MIR3 SINE MIR 110 171 -37 211 256 167 0 chr1 128377671 128377749 -153815915 + MER5A DNA MER1_type 99 189 0 206 204 102 57 chr1 128378054 128378142 -153815522 + L2 LINE L2 3142 3233 -39 313 345 55 0 chr1 128378171 128378336 -153815328 + L3 LINE CR1 1350 1523 -54 1317 183 110 8 chr1 128378782 128379217 -153814447 - LTR54 LTR ERV1 0 498 1 194 179 0 154 chr1 128379417 128379495 -153814169 - L2 LINE L2 -17 3296 3231 688 105 58 6 chr1 128379770 128379941 -153813723 + CT-rich Low_complexity Low_complexity 1 180 0 2269 95 3 0 chr1 128379941 128380226 -153813438 - AluSp SINE Alu -23 290 5 2249 80 3 61 chr1 128381605 128381931 -153811733 + AluY SINE Alu 1 307 -4 420 224 127 67 chr1 128381944 128382109 -153811555 + MIR SINE MIR 46 220 -42 1541 102 0 0 chr1 128382227 128382423 -153811241 + AluSg/x SINE Alu 85 280 -32 2464 68 7 3 chr1 128382431 128382739 -153810925 + AluY SINE Alu 1 309 -2 2323 94 3 34 chr1 128382747 128383067 -153810597 + AluSg SINE Alu 1 310 0 2490 78 3 3 chr1 128383077 128383383 -153810281 + AluSc SINE Alu 1 306 -3 2354 91 3 14 chr1 128383729 128384026 -153809638 + AluSx SINE Alu 1 294 -18 216 335 165 11 chr1 128384391 128384651 -153809013 + L2 LINE L2 2447 2746 -568 1868 121 4 29 chr1 128384653 128384933 -153808731 + AluSx SINE Alu 1 273 -39 225 0 0 0 chr1 128386020 128386045 -153807619 + (GA)n Simple_repeat Simple_repeat 2 26 0 494 220 61 23 chr1 128386213 128386345 -153807319 + MLT1F LTR MaLR 1 137 -418 326 225 19 76 chr1 128386385 128386442 -153807222 + MER39 LTR ERV1 2 61 -646 2315 92 7 0 chr1 128386442 128386735 -153806929 + AluSp SINE Alu 1 295 -18 326 225 19 76 chr1 128386735 128386776 -153806888 + MER39 LTR ERV1 61 103 -604 1496 231 87 71 chr1 128386776 128387016 -153806648 - LTR26B LTR ERV1 -1 530 295 2311 96 3 0 chr1 128387016 128387308 -153806356 - AluSg SINE Alu -17 293 1 1496 231 87 71 chr1 128387308 128387587 -153806077 - LTR26B LTR ERV1 -236 295 3 326 225 19 76 chr1 128387587 128387686 -153805978 + MER39 LTR ERV1 103 347 -360 2578 72 0 0 chr1 128387824 128388129 -153805535 + AluY SINE Alu 1 305 -6 2646 55 0 0 chr1 128388142 128388453 -153805211 + AluY SINE Alu 1 311 0 2100 94 36 32 chr1 128388627 128388935 -153804729 + AluSx SINE Alu 1 309 -3 2246 105 0 0 chr1 128388945 128389254 -153804410 + AluSx SINE Alu 1 309 0 2407 69 6 41 chr1 128389688 128390008 -153803656 + AluSc SINE Alu 1 309 0 301 185 87 11 chr1 128390317 128390409 -153803255 + Charlie2a DNA MER1_type 1595 1693 -1169 * 308 162 256 17 chr1 128390389 128390506 -153803158 + Charlie2a DNA MER1_type 2716 2860 -2 2186 126 3 3 chr1 128390589 128390891 -153802773 + AluSx SINE Alu 1 302 -10 2079 88 0 7 chr1 128391029 128391302 -153802362 + AluSc SINE Alu 2 272 -37 261 274 24 12 chr1 128391410 128391494 -153802170 - LTR2 LTR ERV1 -324 125 41 762 157 46 42 chr1 128391570 128391786 -153801878 + MER39 LTR ERV1 450 666 -41 736 234 11 6 chr1 128391826 128392001 -153801663 + MLT1F LTR MaLR 132 307 -235 33 0 0 0 chr1 128392166 128392199 -153801465 + AT_rich Low_complexity Low_complexity 1 33 0 2216 99 0 14 chr1 128392202 128392495 -153801169 + AluSg SINE Alu 1 289 -21 423 0 0 0 chr1 128392504 128392551 -153801113 + (CA)n Simple_repeat Simple_repeat 2 48 0 2392 100 0 0 chr1 128392764 128393064 -153800600 + AluSg SINE Alu 1 300 -10 2091 133 27 0 chr1 128393316 128393617 -153800047 + AluSx SINE Alu 1 309 -3 1598 204 27 79 chr1 128393686 128394167 -153799497 - MER39 LTR ERV1 -2 705 250 2494 158 29 57 chr1 128394312 128394856 -153798808 - LTR9 LTR ERV1 -83 529 1 931 161 182 0 chr1 128394856 128395092 -153798572 + L1MB5 LINE L1 5635 5913 -261 3756 91 22 2 chr1 128395104 128395642 -153798022 + MER41A LTR ERV1 6 554 0 527 149 32 0 chr1 128395642 128395736 -153797928 + L1MB5 LINE L1 5914 6010 -164 2479 88 311 116 chr1 128395739 128396575 -153797089 - pTR5 LTR ERV1 0 2438 1287 2198 95 0 0 chr1 128396676 128396949 -153796715 - AluSp SINE Alu -40 273 1 2346 100 0 7 chr1 128396959 128397258 -153796406 - AluSg SINE Alu -13 297 1 267 28 0 0 chr1 128397258 128397294 -153796370 - L1MB8 LINE L1 -53 6125 6090 4201 181 24 13 chr1 128397310 128398098 -153795566 - MER21B LTR ERV1 -66 797 1 737 92 18 0 chr1 128398123 128398232 -153795432 + MER41B LTR ERV1 443 553 -82 444 143 0 0 chr1 128398267 128398344 -153795320 - L1MB5 LINE L1 -91 6083 6007 2275 155 21 41 chr1 128398344 128398878 -153794786 + pTR5 LTR ERV1 743 1265 -1173 759 264 39 0 chr1 128598969 128599147 -153594517 + MIR SINE MIR 78 262 0 660 236 127 73 chr1 128599994 128600269 -153593395 + L2 LINE L2 3024 3313 0 403 315 63 0 chr1 128601345 128601488 -153592176 + MIR3 SINE MIR 30 181 -27 812 62 23 8 chr1 128602440 128602569 -153591095 + (TTTC)n Simple_repeat Simple_repeat 1 131 0 2229 81 0 10 chr1 128602575 128602872 -153590792 - AluY SINE Alu 0 311 18 2473 217 38 45 chr1 128604795 128605399 -153588265 - MER77 LTR ERV1 0 605 6 195 329 72 39 chr1 128605623 128605830 -153587834 + L2 LINE L2 2455 2668 -646 1242 128 153 3 chr1 128606050 128606332 -153587332 - Ricksha DNA DNA -8 3246 2923 1623 131 7 62 chr1 128606442 128606665 -153586999 - Ricksha DNA DNA -287 2964 2761 2564 47 0 0 chr1 128606665 128606963 -153586701 - AluY SINE Alu -13 298 1 1623 131 7 62 chr1 128606963 128607045 -153586619 - Ricksha DNA DNA -490 2761 2676 * 2278 123 22 0 chr1 128607042 128607409 -153586255 - Ricksha DNA DNA -641 613 239 562 154 0 0 chr1 128607423 128607514 -153586150 - Ricksha DNA DNA -1163 91 1 687 274 127 72 chr1 128607525 128607832 -153585832 + L2 LINE L2 2949 3272 0 437 322 117 0 chr1 128608007 128608187 -153585477 + MIR SINE MIR 41 241 -21 368 292 42 0 chr1 128608640 128608736 -153584928 + MIR SINE MIR 162 261 -1 256 299 54 27 chr1 128608735 128608882 -153584782 + L2 LINE L2 2712 2862 -452 * 1845 159 10 0 chr1 128610467 128610756 -153582908 - AluJb SINE Alu -16 296 5 241 274 57 57 chr1 128611756 128611931 -153581733 - HAL1 LINE L1 -3 2504 2330 300 275 42 56 chr1 128612106 128612248 -153581416 - HAL1b LINE L1 -458 890 751 360 290 84 73 chr1 128612304 128612659 -153581005 + L1MC5 LINE L1 4488 4846 -1300 2382 85 7 0 chr1 128612674 128612980 -153580684 + AluSx SINE Alu 1 308 -4 1059 216 4 0 chr1 128613001 128613237 -153580427 - L1M4 LINE L1 -3673 2473 2237 832 225 5 0 chr1 128613425 128613616 -153580048 + L1MC5 LINE L1 5627 5818 -1990 1353 255 60 7 chr1 128613671 128614161 -153579503 + L1ME1 LINE L1 5654 6333 -1 364 242 53 8 chr1 128614179 128614311 -153579353 + L1MC5 LINE L1 5825 5962 -1846 246 266 0 0 chr1 128614322 128614401 -153579263 + (TA)n Simple_repeat Simple_repeat 2 80 0 2824 219 39 71 chr1 128614654 128614691 -153578973 + L1MC5 LINE L1 6277 6314 -1647 1721 174 0 7 chr1 128614691 128614973 -153578691 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr1 128614976 128614999 -153578665 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2824 219 39 71 chr1 128614999 128616264 -153577400 + L1MC5 LINE L1 6316 7536 -425 490 253 56 10 chr1 128616282 128616480 -153577184 + L1MC5 LINE L1 7707 7913 -48 629 284 182 33 chr1 128616919 128617714 -153575950 - HAL1 LINE L1 -598 1909 996 2167 107 0 10 chr1 128617716 128618005 -153575659 + AluSx SINE Alu 1 286 -26 969 156 28 11 chr1 128618135 128618315 -153575349 + L1M3e LINE L1 1 183 -6847 * 1365 207 19 12 chr1 128618314 128618638 -153575026 - L1ME LINE L1 -584 5582 5257 530 264 50 25 chr1 128618666 128618825 -153574839 - MIR SINE MIR -79 183 21 850 212 57 5 chr1 128618829 128619022 -153574642 - MER58B DNA MER1_type 0 341 139 185 65 32 0 chr1 128619233 128619264 -153574400 + (AATTG)n Simple_repeat Simple_repeat 2 33 0 358 309 56 74 chr1 128619503 128619665 -153573999 - L2 LINE L2 -22 3250 3092 195 42 0 0 chr1 128622734 128622758 -153570906 + (GGGAA)n Simple_repeat Simple_repeat 5 28 0 555 267 109 0 chr1 128625954 128626119 -153567545 + MIR SINE MIR 59 241 -21 795 245 53 0 chr1 128626639 128626847 -153566817 + MIR SINE MIR 28 246 -16 482 229 86 20 chr1 128627454 128627699 -153565965 - L1MC5 LINE L1 -65 7896 7636 2299 76 0 16 chr1 128627795 128628099 -153565565 + AluSx SINE Alu 1 299 -13 591 254 105 26 chr1 128628621 128628849 -153564815 - MIR SINE MIR -3 259 14 180 335 36 86 chr1 128628896 128629174 -153564490 - L2 LINE L2 -182 3090 2827 21 0 0 0 chr1 128629222 128629243 -153564421 + AT_rich Low_complexity Low_complexity 1 21 0 189 315 205 16 chr1 128630969 128631096 -153562568 + L2 LINE L2 3099 3249 -23 216 235 0 88 chr1 128631187 128631255 -153562409 + MIR SINE MIR 120 181 -81 24 0 0 0 chr1 128631327 128631351 -153562313 + AT_rich Low_complexity Low_complexity 1 24 0 683 243 34 63 chr1 128631395 128631601 -153562063 + MIR SINE MIR 63 262 0 372 22 0 0 chr1 128631686 128631731 -153561933 + (TG)n Simple_repeat Simple_repeat 2 46 0 808 346 4 4 chr1 128631757 128632000 -153561664 - MIR SINE MIR -19 243 1 1863 125 131 18 chr1 128632132 128632469 -153561195 + THE1C LTR MaLR 1 375 0 183 42 0 0 chr1 128632633 128632657 -153561007 + (TATATG)n Simple_repeat Simple_repeat 2 25 0 71 67 0 0 chr1 128632778 128632912 -153560752 + AT_rich Low_complexity Low_complexity 1 134 0 303 246 54 0 chr1 128632971 128633101 -153560563 - Charlie7 DNA MER1_type -286 2326 2190 824 106 7 0 chr1 128633110 128633251 -153560413 + L1MA7 LINE L1 6150 6291 0 2152 167 36 18 chr1 128633255 128633698 -153559966 + L1MB7 LINE L1 5725 6175 -9 4071 148 27 9 chr1 128633736 128634430 -153559234 - MER39 LTR ERV1 0 707 1 23 54 0 0 chr1 128634454 128634491 -153559173 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr1 128634744 128634788 -153558876 + AT_rich Low_complexity Low_complexity 1 44 0 2988 229 133 29 chr1 128635046 128636366 -153557298 - Charlie7 DNA MER1_type -440 2172 715 2156 230 14 33 chr1 128636371 128636946 -153556718 - L1ME1 LINE L1 -5 6161 5598 520 163 74 53 chr1 128636946 128637136 -153556528 - L1ME1 LINE L1 -179 5987 5794 1212 272 47 56 chr1 128637136 128637551 -153556113 - L1MCa LINE L1 -4596 2526 2109 183 42 0 0 chr1 128637551 128637575 -153556089 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1212 272 47 56 chr1 128637575 128637939 -153555725 - L1MCa LINE L1 -5013 2109 1561 2175 124 13 0 chr1 128637952 128638259 -153555405 - AluSq SINE Alu -2 311 1 983 187 0 6 chr1 128638403 128638569 -153555095 - AluJo SINE Alu -147 165 1 426 20 0 0 chr1 128638894 128638945 -153554719 + (TG)n Simple_repeat Simple_repeat 1 51 0 1824 259 85 50 chr1 128638946 128639784 -153553880 - L1MCa LINE L1 -5093 1330 464 6020 135 41 21 chr1 128639810 128640778 -153552886 - L1MA4 LINE L1 -7 6293 5346 198 0 0 0 chr1 128640778 128640800 -153552864 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 6020 135 41 21 chr1 128640800 128640995 -153552669 - L1MA4 LINE L1 -954 5346 5156 1606 181 3 25 chr1 128640995 128641277 -153552387 + AluJo SINE Alu 1 276 -36 6020 135 41 21 chr1 128641277 128642206 -153551458 - L1MA4 LINE L1 -1144 5156 4166 800 215 7 13 chr1 128642306 128642455 -153551209 - AluJo SINE Alu -162 150 3 376 302 69 0 chr1 128642594 128642710 -153550954 + L2 LINE L2 3186 3309 -4 412 285 64 0 chr1 128642867 128643039 -153550625 + L1PB1 LINE L1 12 194 -6669 13757 193 16 9 chr1 128643039 128646093 -153547571 + L1PB1 LINE L1 903 3935 -2932 1728 99 5 0 chr1 128646093 128646315 -153547349 + AluSp SINE Alu 77 299 -14 13757 193 16 9 chr1 128646315 128648185 -153545479 + L1PB1 LINE L1 3935 6103 -764 2221 62 0 31 chr1 128648185 128648476 -153545188 + AluY SINE Alu 30 311 0 13757 193 16 9 chr1 128648476 128649246 -153544418 + L1PB1 LINE L1 6103 6866 -1 26 0 0 0 chr1 128650537 128650563 -153543101 + AT_rich Low_complexity Low_complexity 1 26 0 433 317 199 20 chr1 128650921 128651262 -153542402 + L2 LINE L2 2358 2759 -555 28 0 0 0 chr1 128651500 128651528 -153542136 + AT_rich Low_complexity Low_complexity 1 28 0 1306 183 28 108 chr1 128651546 128651988 -153541676 - LTR37B LTR ERV1 0 468 67 2129 81 40 0 chr1 128651988 128652286 -153541378 + AluSx SINE Alu 1 309 0 1306 183 28 108 chr1 128652286 128652349 -153541315 - LTR37B LTR ERV1 -401 67 1 2189 103 0 0 chr1 128652803 128653161 -153540503 + AluSc SINE Alu 1 358 0 967 232 86 40 chr1 128653240 128653589 -153540075 - MLT1A1 LTR MaLR 0 365 1 2554 205 43 47 chr1 128653704 128655075 -153538589 - L1MCc LINE L1 -1984 5224 3986 2444 74 0 0 chr1 128655191 128655490 -153538174 - AluY SINE Alu -12 299 1 2513 66 0 0 chr1 128655830 128656131 -153537533 + AluY SINE Alu 1 301 -10 2943 219 51 4 chr1 128657375 128658387 -153535277 - L1MCc LINE L1 -3193 4015 2954 3282 243 21 11 chr1 128658401 128659381 -153534283 - L1MCc LINE L1 -4969 2240 1233 1059 270 52 13 chr1 128659412 128659797 -153533867 - L1MCc LINE L1 -6005 685 286 1487 229 84 67 chr1 128659801 128660507 -153533157 - Charlie7 DNA MER1_type -1882 730 13 232 358 75 17 chr1 128661253 128661373 -153532291 - L2 LINE L2 -12 3260 3134 210 304 36 0 chr1 128661721 128661777 -153531887 - L2 LINE L2 -682 2632 2575 390 342 71 10 chr1 128661893 128662089 -153531575 - L2 LINE L2 -926 2388 2181 937 175 25 0 chr1 128662343 128662503 -153531161 + FRAM SINE Alu 1 164 -2 289 314 145 51 chr1 128662820 128663192 -153530472 - L2 LINE L2 -2582 732 326 2021 152 3 3 chr1 128663792 128664170 -153529494 + AluSx SINE Alu 1 378 0 845 295 58 54 chr1 128664690 128665416 -153528248 - L2 LINE L2 0 3313 2590 6177 200 70 77 chr1 128665485 128666996 -153526668 - L1MC4a LINE L1 0 7808 6316 1367 197 53 58 chr1 128666996 128667392 -153526272 + MLT2C1 LTR ERVL 1 394 -3 6177 200 70 77 chr1 128667392 128667998 -153525666 - L1MC4a LINE L1 -1492 6316 5707 376 274 68 47 chr1 128668259 128668322 -153525342 + Charlie7 DNA MER1_type 17 77 -2535 1912 119 69 0 chr1 128668322 128668599 -153525065 + AluSq SINE Alu 1 296 -17 376 274 68 47 chr1 128668599 128668725 -153524939 + Charlie7 DNA MER1_type 77 210 -2402 2055 251 112 42 chr1 128668802 128669689 -153523975 + Charlie7 DNA MER1_type 1425 2406 -206 1818 161 13 10 chr1 128669689 128669987 -153523677 + AluSx SINE Alu 5 303 -9 2055 251 112 42 chr1 128669987 128670208 -153523456 + Charlie7 DNA MER1_type 2406 2610 -2 22 0 0 0 chr1 128670333 128670355 -153523309 + AT_rich Low_complexity Low_complexity 1 22 0 499 186 107 7 chr1 128670421 128670561 -153523103 - L1MC4 LINE L1 -130 7912 7759 2308 107 0 3 chr1 128670695 128671003 -153522661 + AluSg SINE Alu 1 307 -3 219 266 0 0 chr1 128671213 128671277 -153522387 + (TA)n Simple_repeat Simple_repeat 2 65 0 479 286 48 10 chr1 128672595 128672801 -153520863 + LTR33 LTR ERVL 308 521 0 940 187 32 36 chr1 128673208 128673283 -153520381 + MER20 DNA MER1_type 2 76 -143 4017 123 11 13 chr1 128673283 128673418 -153520246 - MER41B LTR ERV1 0 635 501 2302 102 0 0 chr1 128673418 128673712 -153519952 + AluSx SINE Alu 1 294 -18 4017 123 11 13 chr1 128673712 128674212 -153519452 - MER41B LTR ERV1 -134 501 1 940 187 32 36 chr1 128674212 128674355 -153519309 + MER20 DNA MER1_type 76 219 0 401 252 157 17 chr1 128674396 128674511 -153519153 + MIR SINE MIR 4 134 -128 32 0 0 0 chr1 128674852 128674884 -153518780 + AT_rich Low_complexity Low_complexity 1 32 0 1044 126 93 0 chr1 128674884 128675099 -153518565 - L1MA7 LINE L1 -6 6285 6051 508 203 98 8 chr1 128675138 128675261 -153518403 + MIR SINE MIR 117 250 -12 254 197 84 113 chr1 128675342 128675417 -153518247 + L1ME3A LINE L1 6026 6098 -72 1629 177 11 7 chr1 128675417 128675727 -153517937 + AluJb SINE Alu 2 312 0 254 197 84 113 chr1 128675727 128675792 -153517872 + L1ME3A LINE L1 6098 6163 -7 316 359 84 37 chr1 128676666 128676939 -153516725 + L3 LINE CR1 79 364 -1213 1902 175 26 17 chr1 128677037 128677317 -153516347 + MER61C LTR ERV1 14 301 -133 2417 84 0 3 chr1 128677317 128677626 -153516038 - AluSq SINE Alu -5 308 1 1902 175 26 17 chr1 128677626 128677762 -153515902 + MER61C LTR ERV1 301 434 0 629 226 45 0 chr1 128677762 128677895 -153515769 - MIR SINE MIR -104 158 20 264 250 12 12 chr1 128678082 128678162 -153515502 + MER116 DNA Mariner 1 80 0 617 285 66 16 chr1 128678232 128678488 -153515176 + L3 LINE CR1 692 960 -617 295 250 107 0 chr1 128678633 128678717 -153514947 + L3 LINE CR1 1182 1274 -303 239 325 24 40 chr1 128678715 128678841 -153514823 - L2 LINE L2 -4 3268 3145 * 932 106 8 0 chr1 128679229 128679361 -153514303 - FLAM_C SINE Alu 0 133 1 393 153 0 0 chr1 128679383 128679455 -153514209 + (CA)n Simple_repeat Simple_repeat 1 72 0 2152 113 3 3 chr1 128679921 128680231 -153513433 + AluSg SINE Alu 1 310 0 1338 238 146 16 chr1 128681507 128681952 -153511712 + MLT1D LTR MaLR 1 503 -2 1315 205 80 28 chr1 128682027 128682354 -153511310 + MER2 DNA MER2_type 1 344 0 2308 103 0 0 chr1 128683857 128684159 -153509505 + AluSx SINE Alu 1 302 -10 2210 108 7 0 chr1 128684603 128684898 -153508766 - AluSx SINE Alu -15 297 1 2584 230 72 26 chr1 128684904 128685845 -153507819 - L1ME1 LINE L1 -5 6555 5551 2060 63 48 0 chr1 128685845 128686143 -153507521 + AluY SINE Alu 1 311 0 2584 230 72 26 chr1 128686143 128686348 -153507316 - L1ME1 LINE L1 -1009 5551 5357 843 259 80 12 chr1 128686360 128686696 -153506968 - L1ME1 LINE L1 -5157 1386 1028 381 307 88 33 chr1 128686832 128687047 -153506617 - L1ME1 LINE L1 -5573 957 731 448 324 0 11 chr1 128687409 128687591 -153506073 - L1ME1 LINE L1 -6342 198 19 2401 102 0 6 chr1 128687613 128687926 -153505738 + AluSx SINE Alu 1 311 -1 26 0 0 0 chr1 128688084 128688110 -153505554 + AT_rich Low_complexity Low_complexity 1 26 0 383 298 71 12 chr1 128688154 128688322 -153505342 + MIR3 SINE MIR 17 194 -14 2300 95 7 0 chr1 128689480 128689774 -153503890 - AluSp SINE Alu -17 296 1 25 0 0 0 chr1 128689854 128689879 -153503785 + AT_rich Low_complexity Low_complexity 1 25 0 344 322 72 98 chr1 128689928 128690192 -153503472 + L2 LINE L2 2948 3204 -68 512 289 103 28 chr1 128690672 128690925 -153502739 + MLT1I LTR MaLR 19 290 -119 262 208 0 0 chr1 128691131 128691184 -153502480 + MLT1I LTR MaLR 357 409 0 618 329 41 14 chr1 128691185 128691301 -153502363 - MIR SINE MIR -30 232 121 1735 189 4 0 chr1 128691301 128691626 -153502038 + AluJb SINE Alu 1 326 0 618 329 41 14 chr1 128691626 128691727 -153501937 - MIR SINE MIR -141 121 8 621 288 62 42 chr1 128692534 128692982 -153500682 + LTR16B LTR ERVL 1 457 -7 292 217 33 98 chr1 128692990 128693100 -153500564 - L1M4 LINE L1 -321 5853 5737 6434 114 55 50 chr1 128693100 128693310 -153500354 + Tigger3b DNA MER2_type 2 209 -2819 1950 165 0 13 chr1 128693310 128693626 -153500038 + AluJb SINE Alu 1 312 0 6434 114 55 50 chr1 128693626 128694296 -153499368 + Tigger3b DNA MER2_type 209 892 -2136 215 61 30 0 chr1 128694296 128694329 -153499335 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 6434 114 55 50 chr1 128694329 128694671 -153498993 + Tigger3b DNA MER2_type 892 1231 0 292 217 33 98 chr1 128694671 128694744 -153498920 - L1M4 LINE L1 -437 5737 5682 371 183 53 8 chr1 128694757 128694888 -153498776 + (TA)n Simple_repeat Simple_repeat 2 138 0 237 169 22 11 chr1 128694904 128694993 -153498671 + (TA)n Simple_repeat Simple_repeat 1 90 0 2028 118 0 4 chr1 128695042 128695312 -153498352 - AluSg SINE Alu -41 269 1 638 291 88 22 chr1 128695325 128696210 -153497454 - L1M4 LINE L1 -596 5574 4644 393 332 84 26 chr1 128696336 128696562 -153497102 - MIR SINE MIR -6 256 18 396 196 98 86 chr1 128697164 128697306 -153496358 - MIR SINE MIR -63 145 56 1255 148 31 23 chr1 128697954 128698020 -153495644 - Tigger2 DNA MER2_type 0 2718 2654 2126 107 3 29 chr1 128698020 128698330 -153495334 - AluSx SINE Alu -10 302 1 1255 148 31 23 chr1 128698330 128698519 -153495145 - Tigger2 DNA MER2_type -64 2654 2461 3488 127 12 13 chr1 128698565 128699162 -153494502 - Tigger2 DNA MER2_type -1957 761 166 1632 117 5 0 chr1 128699162 128699384 -153494280 - AluY SINE Alu -6 305 83 2206 119 0 0 chr1 128699410 128699705 -153493959 + AluSx SINE Alu 14 308 -4 309 182 0 0 chr1 128699705 128699760 -153493904 + MER8 DNA MER2_type 185 239 0 698 271 131 22 chr1 128699787 128700277 -153493387 - L1ME4a LINE L1 -218 5903 5361 757 209 91 74 chr1 128701293 128701589 -153492075 - L1ME2 LINE L1 -69 6095 5795 * 5216 246 84 30 chr1 128701584 128701798 -153491866 - L1ME2 LINE L1 -1224 4922 4721 2201 107 3 7 chr1 128701798 128702096 -153491568 + AluSx SINE Alu 1 297 -15 5216 246 84 30 chr1 128702096 128703632 -153490032 - L1ME2 LINE L1 -1425 4721 3044 2274 87 3 32 chr1 128703632 128703944 -153489720 - AluSx SINE Alu -9 303 1 5216 246 84 30 chr1 128703944 128704234 -153489430 - L1ME2 LINE L1 -3102 3044 2771 489 279 179 6 chr1 128704892 128705071 -153488593 - MIR SINE MIR 0 262 53 291 214 92 69 chr1 128705403 128705534 -153488130 - MIR SINE MIR -1 261 128 1522 318 139 34 chr1 128706313 128707280 -153486384 + L3 LINE CR1 418 1485 -92 449 238 40 73 chr1 128709081 128709177 -153484487 - MIR SINE MIR 0 262 171 1455 190 20 40 chr1 128709177 128709311 -153484353 + AluJb SINE Alu 5 140 -172 2116 123 0 7 chr1 128709311 128709612 -153484052 + AluSq SINE Alu 1 299 -14 1455 190 20 40 chr1 128709612 128709777 -153483887 + AluJb SINE Alu 140 298 -14 449 238 40 73 chr1 128709777 128709831 -153483833 - MIR SINE MIR -91 171 117 25 0 0 0 chr1 128710013 128710038 -153483626 + AT_rich Low_complexity Low_complexity 1 25 0 258 262 24 60 chr1 128712890 128712974 -153480690 + MLT1L LTR MaLR 196 276 -339 289 250 83 30 chr1 128713117 128713249 -153480415 + MLT1K LTR MaLR 450 588 0 395 226 38 107 chr1 128713920 128714079 -153479585 + L2 LINE L2 3166 3313 0 1467 242 188 22 chr1 128714434 128715010 -153478654 + MER69 DNA AcHobo 1 706 -520 1265 191 35 63 chr1 128715020 128715077 -153478587 + MER69 DNA AcHobo 1650 1707 -819 1646 165 67 0 chr1 128715077 128715344 -153478320 + AluJo SINE Alu 5 289 -23 1265 191 35 63 chr1 128715344 128715370 -153478294 + MER69 DNA AcHobo 1707 1732 -794 2088 94 54 0 chr1 128715370 128715646 -153478018 + AluSg SINE Alu 1 291 -19 1265 191 35 63 chr1 128715646 128715928 -153477736 + MER69 DNA AcHobo 1732 2006 -520 2346 96 3 0 chr1 128716382 128716683 -153476981 - AluSp SINE Alu -9 304 3 2381 84 7 7 chr1 128716949 128717257 -153476407 + AluY SINE Alu 2 309 -2 2169 82 61 3 chr1 128717381 128717674 -153475990 - AluSg SINE Alu 0 310 1 1783 206 51 44 chr1 128717992 128718541 -153475123 + MER69 DNA AcHobo 1956 2508 -18 1939 197 11 16 chr1 128718858 128719223 -153474441 - MLT1A1 LTR MaLR 0 365 3 302 305 141 16 chr1 128719293 128719421 -153474243 + MIR SINE MIR 47 190 -72 1768 224 123 80 chr1 128719697 128720483 -153473181 + L1ME3 LINE L1 5342 6161 -1 740 231 133 71 chr1 128720495 128720975 -153472689 + L1ME4a LINE L1 5610 6119 -2 752 205 8 0 chr1 128721003 128721130 -153472534 + FLAM_A SINE Alu 1 128 -5 2162 131 0 0 chr1 128721159 128721450 -153472214 + AluSx SINE Alu 1 291 -21 644 264 34 0 chr1 128721541 128721719 -153471945 + MIR SINE MIR 77 260 -2 231 316 0 0 chr1 128722250 128722307 -153471357 + polypyrimidine Low_complexity Low_complexity 6 62 0 254 303 222 39 chr1 128725352 128725505 -153468159 - MIR SINE MIR -61 147 10 216 171 0 0 chr1 128725522 128725557 -153468107 - MIR SINE MIR -70 192 158 2442 83 0 3 chr1 128725598 128725898 -153467766 - AluSc SINE Alu -10 299 1 2522 63 0 3 chr1 128726571 128726874 -153466790 - AluY SINE Alu -9 302 1 957 166 85 35 chr1 128727167 128727366 -153466298 - MER3 DNA MER1_type 0 209 1 2890 3 0 0 chr1 128727925 128728231 -153465433 - AluYa5 SINE Alu -5 306 1 2745 186 26 77 chr1 128729980 128730260 -153463404 + LTR8 LTR ERV1 16 309 -382 2785 122 33 26 chr1 128730260 128730685 -153462979 + MSTA LTR MaLR 1 428 0 2745 186 26 77 chr1 128730685 128731093 -153462571 + LTR8 LTR ERV1 309 669 -22 2221 173 3 0 chr1 128731163 128731509 -153462155 - MER7A DNA MER2_type -1 345 1 2369 85 0 0 chr1 128731635 128731928 -153461736 + AluSp SINE Alu 1 293 -20 2353 103 0 0 chr1 128732204 128732504 -153461160 + AluSg SINE Alu 1 300 -10 215 204 0 23 chr1 128732818 128732862 -153460802 + L2 LINE L2 3178 3220 -52 254 132 19 0 chr1 128732912 128732965 -153460699 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 338 277 157 32 chr1 128732972 128733337 -153460327 - MLT1H LTR MaLR -1 548 105 1388 136 75 0 chr1 128733423 128733536 -153460128 + MER30 DNA MER1_type 1 104 -126 2230 109 0 13 chr1 128733536 128733839 -153459825 + AluSc SINE Alu 1 299 -10 1388 136 75 0 chr1 128733839 128733939 -153459725 + MER30 DNA MER1_type 104 230 0 294 346 45 16 chr1 128734014 128734205 -153459459 + MIR SINE MIR 12 198 -10 231 321 19 38 chr1 128734216 128734322 -153459342 + LTR67 LTR ERVL 97 200 -357 2340 76 3 0 chr1 128734556 128734846 -153458818 - AluSp SINE Alu -22 291 1 244 286 0 29 chr1 128734940 128735010 -153458654 + LTR33A LTR ERVL 454 521 -2 370 194 0 139 chr1 128735338 128735446 -153458218 + MIR3 SINE MIR 87 179 -29 294 277 0 60 chr1 128735882 128735965 -153457699 - MIR SINE MIR -75 133 56 339 322 89 64 chr1 128736061 128736195 -153457469 - MIR SINE MIR -19 243 99 1824 155 3 31 chr1 128736195 128736512 -153457152 - AluJb SINE Alu -4 308 1 339 322 89 64 chr1 128736512 128736613 -153457051 - MIR SINE MIR -163 99 2 2050 144 23 0 chr1 128736855 128737154 -153456510 + AluSx SINE Alu 1 306 -6 1616 194 18 69 chr1 128738001 128738326 -153455338 + MLT1A2 LTR MaLR 1 304 -70 1601 113 0 0 chr1 128738326 128738538 -153455126 + AluSq SINE Alu 86 297 -16 1616 194 18 69 chr1 128738538 128738604 -153455060 + MLT1A2 LTR MaLR 304 372 -2 238 298 73 105 chr1 128739336 128739527 -153454137 + MIR SINE MIR 8 192 -70 1181 203 179 27 chr1 128739580 128739876 -153453788 + MER58B DNA MER1_type 1 341 0 1211 187 176 107 chr1 128739887 128739936 -153453728 - MLT2B2 LTR ERVL 0 515 471 2547 147 57 2 chr1 128739936 128740338 -153453326 - MSTA LTR MaLR -4 424 1 1211 187 176 107 chr1 128740338 128740367 -153453297 - MLT2B2 LTR ERVL -44 471 445 325 70 35 0 chr1 128740367 128740424 -153453240 + (TA)n Simple_repeat Simple_repeat 2 60 0 1211 187 176 107 chr1 128740424 128740735 -153452929 - MLT2B2 LTR ERVL -70 445 98 367 281 96 88 chr1 128740740 128741237 -153452427 + ERVL LTR ERVL 4099 4643 -1103 694 301 46 0 chr1 128741247 128741463 -153452201 - MIR SINE MIR -30 232 7 253 134 85 110 chr1 128741989 128742045 -153451619 - MLT1L LTR MaLR -92 523 468 2219 119 0 3 chr1 128742045 128742340 -153451324 + AluSg SINE Alu 1 294 -16 253 134 85 110 chr1 128742340 128742365 -153451299 - MLT1L LTR MaLR -147 468 444 571 229 90 96 chr1 128742451 128742805 -153450859 + LTR67 LTR ERVL 204 555 -2 28 0 0 0 chr1 128742857 128742885 -153450779 + AT_rich Low_complexity Low_complexity 1 28 0 822 165 0 8 chr1 128742891 128743018 -153450646 - FLAM_C SINE Alu -7 126 1 485 258 187 25 chr1 128745007 128745205 -153448459 + MIR SINE MIR 28 257 -5 415 288 83 24 chr1 128745537 128745742 -153447922 + MIR SINE MIR 38 254 -8 2419 75 14 0 chr1 128746008 128746303 -153447361 + AluSp SINE Alu 1 299 -14 246 85 404 0 chr1 128746809 128746856 -153446808 + L1MCc LINE L1 1138 1203 -5220 486 265 148 9 chr1 128746906 128747129 -153446535 + MIR SINE MIR 8 261 -1 251 245 31 92 chr1 128747165 128747263 -153446401 - L1MC/D LINE L1 -2049 5759 5668 2263 115 0 0 chr1 128747263 128747558 -153446106 + AluSx SINE Alu 1 295 -17 226 229 0 115 chr1 128747704 128747766 -153445898 - L1MC/D LINE L1 -2289 5519 5470 1698 139 106 0 chr1 128747766 128748039 -153445625 + AluSx SINE Alu 1 302 -10 226 229 0 115 chr1 128748039 128748072 -153445592 - L1MC/D LINE L1 -2338 5470 5435 29 0 0 0 chr1 128748301 128748330 -153445334 + AT_rich Low_complexity Low_complexity 1 29 0 811 179 14 0 chr1 128748362 128748502 -153445162 - FLAM_C SINE Alu -1 142 1 1184 227 175 0 chr1 128748552 128748895 -153444769 + L1MCc LINE L1 1134 1536 -4887 2148 125 0 3 chr1 128748913 128749216 -153444448 + AluSq SINE Alu 1 302 -11 1847 149 7 0 chr1 128749957 128750245 -153443419 + AluJo SINE Alu 1 290 -22 218 297 144 34 chr1 128750752 128750870 -153442794 - MIR3 SINE MIR -48 160 30 1292 163 54 78 chr1 128751363 128751519 -153442145 + MER33 DNA MER1_type 1 159 -2426 2102 116 10 3 chr1 128751519 128751820 -153441844 - AluSq SINE Alu -10 303 1 1292 163 54 78 chr1 128751820 128751995 -153441669 + MER33 DNA MER1_type 159 324 0 1762 151 93 21 chr1 128752533 128752911 -153440753 + MSTA LTR MaLR 1 405 -23 1519 198 99 60 chr1 128753194 128753680 -153439984 + MLT1D LTR MaLR 1 505 0 261 267 0 13 chr1 128753835 128753910 -153439754 + CT-rich Low_complexity Low_complexity 1 74 0 477 317 160 30 chr1 128754077 128754507 -153439157 - L2 LINE L2 0 3272 2787 577 316 111 60 chr1 128754708 128755256 -153438408 - L2 LINE L2 -1 3271 2689 2418 88 0 0 chr1 128755256 128755561 -153438103 + AluY SINE Alu 1 305 -6 577 316 111 60 chr1 128755561 128755696 -153437968 - L2 LINE L2 -583 2689 2562 782 281 95 81 chr1 128756437 128757016 -153436648 - L2 LINE L2 -886 2428 1842 787 221 68 73 chr1 128757072 128757471 -153436193 + L1MEc LINE L1 619 1015 -5381 217 140 35 18 chr1 128760412 128760469 -153433195 + (TTA)n Simple_repeat Simple_repeat 3 60 0 1551 202 4 7 chr1 128760469 128760741 -153432923 - AluJb SINE Alu -39 273 3 376 302 69 0 chr1 128760880 128760996 -153432668 + L2 LINE L2 3186 3309 -4 412 285 64 0 chr1 128761153 128761325 -153432339 + L1PB1 LINE L1 12 194 -6669 380 119 0 0 chr1 128761325 128761392 -153432272 + L1PB1 LINE L1 903 969 -5894 13746 191 14 10 chr1 128761396 128763695 -153429969 + L1PB1 LINE L1 1864 4151 -2716 1728 99 5 0 chr1 128763695 128763917 -153429747 + AluSp SINE Alu 77 299 -14 13746 191 14 10 chr1 128763917 128765787 -153427877 + L1PB1 LINE L1 4151 6101 -766 2221 62 0 31 chr1 128765787 128766078 -153427586 + AluY SINE Alu 30 311 0 13746 191 14 10 chr1 128766078 128766848 -153426816 + L1PB1 LINE L1 6101 6866 -1 26 0 0 0 chr1 128768139 128768165 -153425499 + AT_rich Low_complexity Low_complexity 1 26 0 433 317 199 20 chr1 128768523 128768864 -153424800 + L2 LINE L2 2358 2759 -555 28 0 0 0 chr1 128769102 128769130 -153424534 + AT_rich Low_complexity Low_complexity 1 28 0 1306 183 28 108 chr1 128769148 128769590 -153424074 - LTR37B LTR ERV1 0 468 67 2129 81 40 0 chr1 128769590 128769888 -153423776 + AluSx SINE Alu 1 309 0 1306 183 28 108 chr1 128769888 128769951 -153423713 - LTR37B LTR ERV1 -401 67 1 2189 103 0 0 chr1 128770405 128770771 -153422893 + AluSc SINE Alu 1 366 0 1200 224 62 42 chr1 128770850 128771208 -153422456 - MLT1A1 LTR MaLR 0 365 1 1647 128 113 16 chr1 128771208 128771527 -153422137 - MLT1A1-int LTR MaLR 0 1735 1386 257 154 185 31 chr1 128771590 128771655 -153422009 - MSTD LTR MaLR -321 75 1 1730 204 24 0 chr1 128771655 128771993 -153421671 + MLT1A1 LTR MaLR 20 365 0 603 285 122 49 chr1 128771997 128772421 -153421243 + L1ME3A LINE L1 2244 2636 -3510 1735 193 20 0 chr1 128772421 128772727 -153420937 + AluJb SINE Alu 1 312 0 603 285 122 49 chr1 128772727 128773007 -153420657 + L1ME3A LINE L1 2636 2894 -3252 2252 122 0 0 chr1 128773007 128773311 -153420353 - AluSx SINE Alu -8 304 1 603 285 122 49 chr1 128773311 128774192 -153419472 + L1ME3A LINE L1 2894 4018 -2128 242 83 0 0 chr1 128774452 128774488 -153419176 + L1MC/D LINE L1 5784 5819 -1989 21 36 0 0 chr1 128775221 128775249 -153418415 + GC_rich Low_complexity Low_complexity 1 28 0 222 263 125 0 chr1 128776352 128776432 -153417232 - L2 LINE L2 -36 3236 3147 21 0 0 0 chr1 128777849 128777870 -153415794 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr1 128778708 128778751 -153414913 + AT_rich Low_complexity Low_complexity 1 43 0 355 264 39 8 chr1 128778858 128778987 -153414677 + L1ME3A LINE L1 5367 5499 -665 402 268 113 18 chr1 128779008 128779360 -153414304 + L1ME3A LINE L1 5555 5946 -224 318 231 119 15 chr1 128781013 128781147 -153412517 - L1ME4a LINE L1 -25 6096 5949 495 228 85 45 chr1 128781736 128781982 -153411682 - MER113 DNA MER1_type? -58 463 208 198 209 0 0 chr1 128782164 128782207 -153411457 + (TG)n Simple_repeat Simple_repeat 2 44 0 1192 214 80 22 chr1 128782241 128782706 -153410958 - MLT2F LTR ERVL -59 604 66 285 258 33 20 chr1 128782774 128782925 -153410739 - MER113 DNA MER1_type? -368 153 1 584 143 41 0 chr1 128783205 128783303 -153410361 + Tigger3b DNA MER2_type 1 102 -1129 * 4644 130 81 10 chr1 128783301 128784194 -153409470 + Tigger3b DNA MER2_type 274 1229 -2 2439 82 3 0 chr1 128784403 128784709 -153408955 + AluSg1 SINE Alu 1 307 -2 853 136 0 50 chr1 128784738 128784878 -153408786 - FLAM_C SINE Alu 0 133 1 253 222 16 32 chr1 128785408 128785471 -153408193 + MER5A DNA MER1_type 53 114 -75 183 277 266 21 chr1 128785610 128785704 -153407960 - MIR SINE MIR -132 130 14 2356 59 3 0 chr1 128785900 128786186 -153407478 - AluY SINE Alu -11 300 14 252 217 0 0 chr1 128786302 128786348 -153407316 - L2 LINE L2 -6 3307 3262 250 405 16 16 chr1 128786503 128786624 -153407040 + MIR SINE MIR 20 140 -122 2016 117 3 40 chr1 128787269 128787568 -153406096 - AluSx SINE Alu -24 288 1 270 95 0 0 chr1 128787847 128787889 -153405775 + (TG)n Simple_repeat Simple_repeat 1 42 0 2288 115 0 0 chr1 128788234 128788530 -153405134 + AluSq SINE Alu 1 296 -17 218 187 27 80 chr1 128788536 128788611 -153405053 + MIR SINE MIR 192 262 0 295 342 87 54 chr1 128788628 128788996 -153404668 - L2 LINE L2 0 3313 2934 2130 112 0 0 chr1 128789490 128789777 -153403887 - AluSx SINE Alu -9 303 17 216 300 0 29 chr1 128789977 128790047 -153403617 + L2 LINE L2 3243 3310 -3 2416 80 6 13 chr1 128791347 128791660 -153402004 - AluSq SINE Alu -2 311 1 384 139 0 0 chr1 128792143 128792222 -153401442 + (TG)n Simple_repeat Simple_repeat 2 80 0 251 326 144 56 chr1 128792558 128792898 -153400766 + L2 LINE L2 2848 3217 -55 306 132 0 0 chr1 128792903 128792956 -153400708 + (CCA)n Simple_repeat Simple_repeat 3 55 0 540 257 158 22 chr1 128792970 128793192 -153400472 - MIR SINE MIR -3 259 8 1864 226 119 63 chr1 128793268 128794059 -153399605 - L1MD3 LINE L1 0 8042 7189 1585 123 9 4 chr1 128794059 128794286 -153399378 - AluSq SINE Alu -85 228 1 1864 226 119 63 chr1 128794286 128794556 -153399108 - L1MD3 LINE L1 -853 7189 6935 2028 189 26 0 chr1 128794557 128794943 -153398721 - L1MD1 LINE L1 -1 6310 5915 1083 186 45 199 chr1 128794949 128795871 -153397793 - L1MD1 LINE L1 -1383 4832 4053 19272 167 26 13 chr1 128795890 128795971 -153397693 - L1 LINE L1 -1359 6206 6128 216 0 0 0 chr1 128795971 128795995 -153397669 + (TTG)n Simple_repeat Simple_repeat 1 24 0 19272 167 26 13 chr1 128795995 128798227 -153395437 - L1 LINE L1 -1437 6128 3926 1856 174 3 3 chr1 128798227 128798537 -153395127 - AluSx SINE Alu -2 310 1 19272 167 26 13 chr1 128798537 128799351 -153394313 - L1 LINE L1 -3639 3926 3124 2413 86 0 6 chr1 128799351 128799664 -153394000 - AluY SINE Alu 0 311 1 19272 167 26 13 chr1 128799664 128802559 -153391105 - L1 LINE L1 -4441 3124 102 3153 146 7 4 chr1 128802559 128803019 -153390645 + LOR1b LTR ERV1 1 461 0 19272 167 26 13 chr1 128803019 128803108 -153390556 - L1 LINE L1 -7463 102 16 2678 241 52 16 chr1 128803105 128803921 -153389743 - L1MD1 LINE L1 -2164 5401 4557 * 587 212 34 34 chr1 128803976 128804122 -153389542 - L1MC4 LINE L1 -1093 6949 6804 246 341 11 17 chr1 128805369 128805545 -153388119 + CT-rich Low_complexity Low_complexity 4 178 0 * 405 238 16 69 chr1 128805444 128805633 -153388031 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 210 380 26 0 chr1 128806407 128806520 -153387144 - MIR SINE MIR -93 169 54 469 269 41 67 chr1 128806681 128806949 -153386715 - L1MD1 LINE L1 -5517 2229 1969 758 283 95 81 chr1 128807005 128807584 -153386080 + L2 LINE L2 1842 2428 -886 628 319 87 56 chr1 128808325 128808457 -153385207 + L2 LINE L2 2562 2688 -584 2430 88 0 0 chr1 128808457 128808763 -153384901 - AluY SINE Alu -5 306 1 628 319 87 56 chr1 128808763 128809310 -153384354 + L2 LINE L2 2688 3271 -1 452 305 214 19 chr1 128809511 128809940 -153383724 + L2 LINE L2 2787 3313 0 261 267 0 13 chr1 128810107 128810182 -153383482 + GA-rich Low_complexity Low_complexity 1 74 0 1718 200 95 56 chr1 128810337 128810823 -153382841 - MLT1D LTR MaLR 0 505 1 1926 148 93 21 chr1 128811107 128811485 -153382179 - MSTA LTR MaLR -23 405 1 1292 163 54 78 chr1 128812023 128812198 -153381466 - MER33 DNA MER1_type -2261 324 159 2102 116 10 3 chr1 128812198 128812499 -153381165 + AluSq SINE Alu 1 303 -10 1292 163 54 78 chr1 128812499 128812655 -153381009 - MER33 DNA MER1_type -2426 159 1 218 297 144 34 chr1 128813148 128813266 -153380398 + MIR3 SINE MIR 30 160 -48 1847 149 7 0 chr1 128813774 128814062 -153379602 - AluJo SINE Alu -22 290 1 2148 125 0 3 chr1 128814804 128815107 -153378557 - AluSq SINE Alu -11 302 1 1184 227 175 0 chr1 128815125 128815468 -153378196 - L1MCc LINE L1 -4887 1536 1134 811 179 14 0 chr1 128815518 128815658 -153378006 + FLAM_C SINE Alu 1 142 -1 29 0 0 0 chr1 128815690 128815719 -153377945 + AT_rich Low_complexity Low_complexity 1 29 0 226 229 0 115 chr1 128815948 128815981 -153377683 + L1MC/D LINE L1 5435 5470 -2338 1820 114 107 0 chr1 128815981 128816253 -153377411 - AluSx SINE Alu -11 301 1 226 229 0 115 chr1 128816253 128816315 -153377349 + L1MC/D LINE L1 5470 5519 -2289 2263 112 0 0 chr1 128816461 128816756 -153376908 - AluSx SINE Alu -17 295 1 244 286 0 29 chr1 128816850 128816920 -153376744 + LTR33A LTR ERVL 454 521 -2 359 204 0 139 chr1 128817247 128817355 -153376309 + MIR3 SINE MIR 87 179 -29 294 277 0 60 chr1 128817791 128817874 -153375790 - MIR SINE MIR -75 133 56 339 322 89 64 chr1 128817970 128818104 -153375560 - MIR SINE MIR -19 243 99 1791 149 3 41 chr1 128818104 128818420 -153375244 - AluJb SINE Alu -8 304 1 339 322 89 64 chr1 128818420 128818521 -153375143 - MIR SINE MIR -163 99 2 1601 206 36 58 chr1 128819087 128819534 -153374130 - LTR56 LTR ERV1 0 445 9 21 0 0 0 chr1 128821555 128821576 -153372088 + AT_rich Low_complexity Low_complexity 1 21 0 275 207 0 17 chr1 128823290 128823348 -153370316 + FLAM SINE Alu 76 132 -1 1923 147 28 132 chr1 128823645 128824109 -153369555 + MER47B DNA MER2_type 2 417 -1 293 288 144 0 chr1 128824706 128824817 -153368847 + L2 LINE L2 2165 2291 -1023 227 355 21 0 chr1 128824844 128824937 -153368727 + L2 LINE L2 2597 2691 -623 21 57 0 0 chr1 128826904 128826939 -153366725 + AT_rich Low_complexity Low_complexity 1 35 0 368 202 22 0 chr1 128826979 128827068 -153366596 + CT-rich Low_complexity Low_complexity 3 93 0 261 119 0 0 chr1 128827089 128827131 -153366533 + (TCCCC)n Simple_repeat Simple_repeat 4 45 0 1555 130 7 97 chr1 128827137 128827445 -153366219 - AluJb SINE Alu -32 280 1 963 282 193 15 chr1 128827473 128828159 -153365505 + L2 LINE L2 2257 3068 -245 930 172 18 0 chr1 128828159 128828322 -153365342 + AluJb SINE Alu 147 312 0 1414 152 12 12 chr1 128828912 128828928 -153364736 - L1MB3 LINE L1 -353 5830 5815 1821 200 14 6 chr1 128828928 128829264 -153364400 - L1MB3 LINE L1 -17 6166 5825 2027 77 0 4 chr1 128829264 128829546 -153364118 - AluY SINE Alu 0 311 43 1821 200 14 6 chr1 128829546 128829559 -153364105 - L1MB3 LINE L1 -358 5825 5814 1764 106 67 7 chr1 128829559 128829839 -153363825 - L1MA5A LINE L1 0 6297 5998 1414 152 12 12 chr1 128829839 128830065 -153363599 - L1MB3 LINE L1 -366 5817 5587 2561 54 0 13 chr1 128831194 128831507 -153362157 + AluY SINE Alu 1 309 -2 429 318 42 12 chr1 128832614 128832821 -153360843 - MIR3 SINE MIR -30 232 15 208 309 62 0 chr1 128833874 128833955 -153359709 + L2 LINE L2 2127 2212 -1102 23 54 0 0 chr1 128834256 128834293 -153359371 + AT_rich Low_complexity Low_complexity 1 37 0 274 264 37 68 chr1 128834306 128834469 -153359195 - L1ME4a LINE L1 -22 6099 5942 607 333 152 22 chr1 128834479 128835225 -153358439 - L2 LINE L2 -32 3281 2447 24 0 0 0 chr1 128835455 128835479 -153358185 + AT_rich Low_complexity Low_complexity 1 24 0 468 295 60 5 chr1 128835997 128836154 -153357510 - MIR SINE MIR -67 141 11 481 230 52 69 chr1 128836559 128836778 -153356886 + MIR SINE MIR 21 239 -23 2100 107 0 55 chr1 128837055 128837382 -153356282 + AluSg1 SINE Alu 1 309 0 2504 61 3 0 chr1 128838553 128838847 -153354817 - AluSp SINE Alu -17 296 2 30 27 0 0 chr1 128839141 128839178 -153354486 + AT_rich Low_complexity Low_complexity 1 37 0 234 0 0 0 chr1 128839447 128839473 -153354191 + (T)n Simple_repeat Simple_repeat 1 26 0 313 286 113 0 chr1 128840521 128840654 -153353010 - L1ME4a LINE L1 -12 6109 5962 33 66 0 0 chr1 128841851 128841912 -153351752 + AT_rich Low_complexity Low_complexity 1 61 0 393 22 0 0 chr1 128844093 128844139 -153349525 + (TG)n Simple_repeat Simple_repeat 1 46 0 234 156 0 0 chr1 128844796 128844841 -153348823 + T-rich Low_complexity Low_complexity 1 45 0 2230 105 3 10 chr1 128847465 128847761 -153345903 + AluSq SINE Alu 1 294 -19 36 62 0 0 chr1 128847772 128847836 -153345828 + AT_rich Low_complexity Low_complexity 1 64 0 189 349 84 14 chr1 128847875 128848090 -153345574 - L3b LINE CR1 -250 1333 1104 517 268 56 7 chr1 128848651 128848793 -153344871 - MIR SINE MIR -94 168 20 1462 196 45 3 chr1 128848827 128849118 -153344546 - AluJo SINE Alu -9 303 1 1031 280 80 42 chr1 128849645 128850098 -153343566 + L1MEc LINE L1 84 553 -5843 252 0 0 0 chr1 128850153 128850181 -153343483 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1562 213 106 40 chr1 128850194 128850824 -153342840 + L1MEc LINE L1 670 1341 -5055 464 279 135 8 chr1 128850950 128851194 -153342470 + L1PB1 LINE L1 178 452 -6411 * 594 190 250 5 chr1 128851191 128851375 -153342289 + L1PB1 LINE L1 947 1175 -5688 2266 98 0 0 chr1 128851391 128851687 -153341977 + AluSg SINE Alu 1 296 -14 1802 165 7 0 chr1 128851697 128852006 -153341658 + L1PB1 LINE L1 1337 1647 -5216 14115 202 21 5 chr1 128852009 128855963 -153337701 + L1PB1 LINE L1 1795 5862 -1000 334 157 0 0 chr1 128856107 128856158 -153337506 + THE1A LTR MaLR 301 351 -4 7712 60 7 14 chr1 128856158 128857160 -153336504 + L1PA3 LINE L1 1 995 -5151 27324 27 0 0 chr1 128857260 128861299 -153332365 + L1PA3 LINE L1 2122 6161 0 5943 100 16 2 chr1 128861342 128862338 -153331326 + L1PB1 LINE L1 5857 6864 -3 1906 207 128 2 chr1 128862341 128862825 -153330839 + L1ME1 LINE L1 5414 5958 -208 389 318 40 15 chr1 128862980 128863178 -153330486 - MARNA DNA Mariner -294 292 90 361 309 79 20 chr1 128863413 128863565 -153330099 + L3 LINE CR1 1370 1530 -47 2151 126 0 0 chr1 128865152 128865454 -153328210 + AluSq SINE Alu 1 302 -11 189 107 0 0 chr1 128867052 128867080 -153326584 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 883 231 10 0 chr1 128867327 128867530 -153326134 - MER3 DNA MER1_type -3 206 2 485 273 33 13 chr1 128868033 128868183 -153325481 - MIR SINE MIR -27 235 83 185 128 0 26 chr1 128868867 128868906 -153324758 + (TTCTCC)n Simple_repeat Simple_repeat 1 38 0 267 246 131 8 chr1 128872138 128872260 -153321404 - L1ME4a LINE L1 -3 6118 5982 22 56 0 0 chr1 128872682 128872718 -153320946 + AT_rich Low_complexity Low_complexity 1 36 0 482 222 97 6 chr1 128873455 128873625 -153320039 + L1ME LINE L1 3817 4000 -2146 354 243 33 103 chr1 128873685 128873957 -153319707 + MER112 DNA MER1_type 4 256 0 327 284 111 10 chr1 128874211 128874419 -153319245 + L1ME LINE L1 4589 4817 -1329 433 263 133 29 chr1 128874477 128874713 -153318951 + L1ME LINE L1 4965 5175 -989 2128 126 0 17 chr1 128874713 128875014 -153318650 + AluSx SINE Alu 3 298 -14 433 263 133 29 chr1 128875014 128875390 -153318274 + L1ME LINE L1 5175 5650 -514 484 242 62 109 chr1 128875400 128875656 -153318008 + MER112 DNA MER1_type 6 249 -11 263 230 110 70 chr1 128876470 128876570 -153317094 - LTR33 LTR ERVL -412 109 6 662 203 33 13 chr1 128877330 128877483 -153316181 - MLT1D LTR MaLR 0 505 350 399 202 24 24 chr1 128877489 128877573 -153316091 - MLT1D LTR MaLR -421 84 1 1854 148 25 0 chr1 128877967 128878250 -153315414 - AluJb SINE Alu -22 290 1 235 388 122 0 chr1 128878289 128878387 -153315277 + L2 LINE L2 3139 3248 -24 251 310 126 0 chr1 128878440 128878527 -153315137 + L2 LINE L2 3213 3310 -3 762 99 0 14 chr1 128879922 128880166 -153313498 + AluSx SINE Alu 13 302 -8 579 279 90 14 chr1 128880229 128880467 -153313197 - MIR SINE MIR -4 258 3 265 226 0 0 chr1 128880911 128880964 -153312700 - L2 LINE L2 -7 3265 3213 261 262 90 16 chr1 128881585 128881707 -153311957 + MIR SINE MIR 119 249 -13 342 100 0 0 chr1 128882250 128882310 -153311354 + (TG)n Simple_repeat Simple_repeat 2 61 0 234 214 53 61 chr1 128882713 128882844 -153310820 - L1ME4a LINE L1 -1 6120 5991 434 300 135 37 chr1 128882861 128883431 -153310233 - L1ME4a LINE L1 -223 5898 5273 768 22 0 0 chr1 128883888 128883978 -153309686 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 941 153 6 0 chr1 128884015 128884191 -153309473 + CT-rich Low_complexity Low_complexity 4 180 0 1343 183 0 5 chr1 128884206 128884430 -153309234 - AluJo SINE Alu -79 233 11 21 57 0 0 chr1 128884847 128884882 -153308782 + AT_rich Low_complexity Low_complexity 1 35 0 4212 165 78 22 chr1 128885363 128885523 -153308141 - L1MB2 LINE L1 -2 6169 6019 2384 88 0 3 chr1 128885523 128885829 -153307835 - AluSc SINE Alu -4 305 1 4212 165 78 22 chr1 128885829 128886869 -153306795 - L1MB2 LINE L1 -152 6019 4915 364 262 52 73 chr1 128886969 128887297 -153306367 - HAL1b LINE L1 -862 486 166 1410 185 19 30 chr1 128888419 128888689 -153304975 - AluJo SINE Alu -45 267 1 13833 206 38 25 chr1 128888715 128889116 -153304548 - L1PB3 LINE L1 0 6857 6463 2139 119 3 6 chr1 128889116 128889428 -153304236 - AluY SINE Alu 0 311 1 13833 206 38 25 chr1 128889428 128890495 -153303169 - L1PB3 LINE L1 -394 6463 5412 231 43 43 22 chr1 128890495 128890541 -153303123 + (TTTTG)n Simple_repeat Simple_repeat 3 49 0 13833 206 38 25 chr1 128890541 128896801 -153296863 - L1PB3 LINE L1 -1445 5412 3 3667 255 95 35 chr1 128896852 128897877 -153295787 - L1MEc LINE L1 -2575 4069 3107 1869 166 10 0 chr1 128897877 128898167 -153295497 - AluSx SINE Alu -19 293 1 3667 255 95 35 chr1 128898167 128899121 -153294543 - L1MEc LINE L1 -3537 3107 2017 30 59 0 0 chr1 128899133 128899184 -153294480 + AT_rich Low_complexity Low_complexity 1 51 0 2105 193 66 44 chr1 128899278 128899826 -153293838 - L1MEc LINE L1 -5981 561 2 1744 166 14 10 chr1 128899837 128900132 -153293532 - AluJb SINE Alu -16 296 1 1997 197 24 0 chr1 128902361 128902742 -153290922 - MLT1B LTR MaLR 0 390 1 312 347 93 23 chr1 128903150 128903493 -153290171 - L2 LINE L2 -20 3293 2927 447 147 52 21 chr1 128903789 128904080 -153289584 + (TA)n Simple_repeat Simple_repeat 1 300 0 572 155 29 10 chr1 128904222 128904325 -153289339 - MER5B DNA MER1_type -72 106 2 362 242 72 46 chr1 128904354 128904507 -153289157 - L1MC/D LINE L1 -2289 5519 5363 270 73 0 0 chr1 128904513 128904554 -153289110 + (TG)n Simple_repeat Simple_repeat 1 41 0 207 0 0 0 chr1 128904829 128904852 -153288812 + (TA)n Simple_repeat Simple_repeat 1 23 0 2124 67 4 0 chr1 128904853 128905123 -153288541 - L1PA7 LINE L1 -11 6143 5873 310 333 108 13 chr1 128905145 128905532 -153288132 - L1MC/D LINE L1 -812 5334 4911 542 340 101 22 chr1 128905570 128906073 -153287591 - L2 LINE L2 -420 2894 2352 269 347 41 29 chr1 128906079 128906321 -153287343 + L1M4 LINE L1 3325 3569 -2577 2069 106 18 3 chr1 128906692 128906974 -153286690 - AluSx SINE Alu -15 297 12 437 324 68 18 chr1 128907029 128907310 -153286354 - L2 LINE L2 -961 2353 2059 356 326 30 0 chr1 128907866 128907998 -153285666 + MER91A DNA MER1_type 2 137 -59 23 33 0 0 chr1 128908815 128908845 -153284819 + AT_rich Low_complexity Low_complexity 1 30 0 707 271 4 58 chr1 128909202 128909479 -153284185 - L1M4 LINE L1 -1098 5048 4787 2093 133 3 3 chr1 128909719 128910019 -153283645 - AluSx SINE Alu -12 300 1 2344 100 3 0 chr1 128910441 128910741 -153282923 - AluSg SINE Alu -9 301 1 390 298 113 76 chr1 128911360 128911766 -153281898 - L2 LINE L2 0 3272 2852 2820 125 7 2 chr1 128912134 128912557 -153281107 + L1PB3 LINE L1 5728 6152 -2 239 204 0 0 chr1 128912629 128912673 -153280991 - L2 LINE L2 -13 3300 3257 22 0 0 0 chr1 128912738 128912760 -153280904 + AT_rich Low_complexity Low_complexity 1 22 0 200 242 179 32 chr1 128912874 128912969 -153280695 - L2 LINE L2 -7 3265 3157 1764 61 0 5 chr1 128913084 128913296 -153280368 + AluY SINE Alu 86 296 -15 366 204 0 0 chr1 128915095 128915183 -153278481 + (TG)n Simple_repeat Simple_repeat 1 88 0 408 251 67 14 chr1 128916095 128916253 -153277411 + MIR SINE MIR 12 172 -63 24 0 0 0 chr1 128916313 128916337 -153277327 + AT_rich Low_complexity Low_complexity 1 24 0 280 257 14 14 chr1 128916391 128916465 -153277199 - MIR3 SINE MIR -17 191 118 517 241 113 26 chr1 128916880 128917075 -153276589 + Charlie8 DNA MER1_type 38 249 -2168 415 272 56 17 chr1 128917601 128917783 -153275881 - MIR SINE MIR -61 147 6 240 268 0 0 chr1 128917792 128917848 -153275816 - L2 LINE L2 -14 3258 3203 595 291 109 0 chr1 128918232 128918462 -153275202 + MIR SINE MIR 2 256 -6 215 339 137 0 chr1 128919859 128919983 -153273681 + MIR3 SINE MIR 62 202 -6 209 116 0 47 chr1 128920267 128920310 -153273354 + (CATA)n Simple_repeat Simple_repeat 1 41 0 342 67 0 0 chr1 128920381 128920426 -153273238 + (TA)n Simple_repeat Simple_repeat 2 46 0 2205 103 7 0 chr1 128921330 128921622 -153272042 + AluSc SINE Alu 1 294 -15 224 341 17 40 chr1 128921948 128922121 -153271543 + L2 LINE L2 2915 3083 -189 314 307 126 0 chr1 128922405 128922532 -153271132 + L2 LINE L2 3125 3267 -5 396 266 227 24 chr1 128923310 128923631 -153270033 + L2 LINE L2 2778 3159 -154 393 102 0 0 chr1 128923631 128923690 -153269974 + (CA)n Simple_repeat Simple_repeat 2 60 0 279 193 52 30 chr1 128923693 128923828 -153269836 + (TA)n Simple_repeat Simple_repeat 2 139 0 327 265 48 0 chr1 128923865 128923948 -153269716 + L2 LINE L2 3227 3313 0 807 161 0 0 chr1 128924482 128924606 -153269058 + FLAM_C SINE Alu 11 134 -9 240 299 93 9 chr1 128924626 128924733 -153268931 - MIR SINE MIR -57 151 36 345 381 29 12 chr1 128925164 128925337 -153268327 + L2 LINE L2 3097 3272 0 1257 162 4 54 chr1 128925773 128926014 -153267650 - AluJb SINE Alu -1 311 83 386 349 40 0 chr1 128926792 128926941 -153266723 + MIR SINE MIR 47 201 -61 200 329 52 45 chr1 128927026 128927181 -153266483 - MIR3 SINE MIR -49 159 4 309 51 0 0 chr1 128928096 128928135 -153265529 + (CA)n Simple_repeat Simple_repeat 1 39 0 756 277 99 45 chr1 128928268 128928856 -153264808 + L1ME4a LINE L1 5347 5963 -158 486 255 28 0 chr1 128928941 128929082 -153264582 - MIR SINE MIR -57 205 61 2074 119 113 0 chr1 128930001 128930329 -153263335 + MER47A DNA MER2_type 1 365 -1 956 158 60 33 chr1 128930985 128931169 -153262495 + MER5A DNA MER1_type 1 189 0 211 248 17 179 chr1 128932193 128932495 -153261169 - L2 LINE L2 0 3272 3020 228 273 45 0 chr1 128932916 128932982 -153260682 + L2 LINE L2 3245 3313 0 278 128 0 0 chr1 128934173 128934220 -153259444 + L1MC1 LINE L1 6287 6333 0 403 295 13 32 chr1 128934262 128934418 -153259246 - L2 LINE L2 0 3313 3161 1096 313 129 27 chr1 128934519 128934731 -153258933 - L2 LINE L2 -337 2977 2788 1831 74 0 9 chr1 128934731 128934960 -153258704 - AluY SINE Alu -2 309 83 1096 313 129 27 chr1 128934960 128935897 -153257767 - L2 LINE L2 -526 2788 1711 185 186 17 85 chr1 128936999 128937058 -153256606 + MIR SINE MIR 121 175 -87 242 310 42 14 chr1 128937537 128937679 -153255985 - L2 LINE L2 -55 3258 3113 203 271 75 68 chr1 128937798 128937931 -153255733 - L2 LINE L2 -510 2804 2671 20111 25 6 0 chr1 128938250 128941363 -153252301 + L1PA3 LINE L1 3033 6155 0 1617 128 80 62 chr1 128941479 128941767 -153251897 + AluJo SINE Alu 1 293 -19 2119 106 0 17 chr1 128941912 128942214 -153251450 + AluSx SINE Alu 1 297 -15 548 271 9 50 chr1 128942874 128942977 -153250687 + MIR SINE MIR 44 135 -127 1554 158 113 36 chr1 128942977 128943339 -153250325 + MLT1B LTR MaLR 1 390 0 548 271 9 50 chr1 128943339 128943453 -153250211 + MIR SINE MIR 135 252 -10 1917 136 0 11 chr1 128943903 128944236 -153249428 + AluSx SINE Alu 1 330 0 347 219 79 73 chr1 128944404 128944582 -153249082 - MER104 DNA MER2_type 0 180 2 760 262 42 95 chr1 128944608 128945040 -153248624 - L1ME3 LINE L1 -219 5951 5543 1825 92 4 0 chr1 128945355 128945582 -153248082 - AluSg SINE Alu -33 277 50 786 142 0 16 chr1 128945593 128945720 -153247944 + FLAM_C SINE Alu 16 140 -3 732 281 114 37 chr1 128945761 128946626 -153247038 - L1MEc LINE L1 -3137 2992 2103 29 60 0 0 chr1 128946939 128946989 -153246675 + AT_rich Low_complexity Low_complexity 1 50 0 317 274 75 22 chr1 128947117 128947343 -153246321 - L1MEc LINE L1 -4725 1585 1348 955 273 75 92 chr1 128947360 128948618 -153245046 - L1MEc LINE L1 -4870 1249 14 6521 128 185 89 chr1 128948802 128950349 -153243315 - pTR5 LTR ERV1 0 2438 743 307 311 53 29 chr1 128950376 128950585 -153243079 + L2 LINE L2 2065 2278 -1036 1233 272 26 9 chr1 128951187 128951533 -153242131 + LTR16A LTR ERVL 93 444 -6 204 194 83 42 chr1 128951575 128951647 -153242017 + MIR SINE MIR 62 136 -72 237 216 0 20 chr1 128951682 128951733 -153241931 + MIR SINE MIR 32 81 -181 522 301 156 11 chr1 128952040 128952541 -153241123 + L2 LINE L2 2712 3308 -5 326 255 0 53 chr1 128953171 128953265 -153240399 - MIR3 SINE MIR -30 178 90 614 290 209 26 chr1 128953265 128954082 -153239582 + L2 LINE L2 2333 3311 -2 256 241 0 0 chr1 128954134 128954192 -153239472 - MIR SINE MIR -131 77 20 468 0 0 0 chr1 128954492 128954544 -153239120 + (CA)n Simple_repeat Simple_repeat 2 53 0 228 135 0 0 chr1 128955887 128955924 -153237740 + (GGGAA)n Simple_repeat Simple_repeat 1 37 0 445 249 48 26 chr1 128956022 128956211 -153237453 - MIR SINE MIR -7 255 63 269 336 73 0 chr1 128957304 128957414 -153236250 + MIR3 SINE MIR 76 193 -15 512 277 13 13 chr1 128958257 128958412 -153235252 - L2 LINE L2 0 3313 3159 301 145 0 29 chr1 128958612 128958681 -153234983 + (GGAA)n Simple_repeat Simple_repeat 1 67 0 518 228 59 0 chr1 128958892 128959028 -153234636 + MIR SINE MIR 48 191 -71 26 0 0 0 chr1 128959151 128959177 -153234487 + AT_rich Low_complexity Low_complexity 1 26 0 234 167 74 0 chr1 128960753 128960807 -153232857 + MIR SINE MIR 121 178 -84 299 304 56 0 chr1 128960919 128961044 -153232620 - L1ME1 LINE L1 -3 6163 6032 2403 256 62 17 chr1 128961046 128961142 -153232522 - L1M4 LINE L1 -2327 3819 3729 965 158 6 0 chr1 128961142 128961306 -153232358 - L1MB1 LINE L1 -7 6161 5997 2403 256 62 17 chr1 128961306 128962159 -153231505 - L1M4 LINE L1 -2417 3729 2827 227 318 33 73 chr1 128962203 128962354 -153231310 - L2 LINE L2 -6 3266 3122 289 198 30 129 chr1 128963532 128963633 -153230031 + MIR SINE MIR 90 180 -82 1528 194 0 4 chr1 128964122 128964380 -153229284 + AluJb SINE Alu 1 257 -55 1586 202 76 9 chr1 128964738 128965080 -153228584 + MLT1A1 LTR MaLR 1 365 0 414 207 75 194 chr1 128965876 128966103 -153227561 + MER58C DNA MER1_type 4 203 -12 234 264 0 111 chr1 128966275 128966419 -153227245 - L2 LINE L2 -177 3095 2968 619 292 41 0 chr1 128966588 128966783 -153226881 + MIR SINE MIR 53 255 -7 854 199 41 1 chr1 128968399 128968583 -153225081 - MIR SINE MIR -64 144 3 782 226 40 0 chr1 128970204 128970381 -153223283 + MIR SINE MIR 79 262 0 250 326 10 10 chr1 128971347 128971445 -153222219 + GA-rich Low_complexity Low_complexity 1 98 0 455 352 34 0 chr1 128972237 128972416 -153221248 - MIR SINE MIR -48 214 30 471 315 15 20 chr1 128972866 128973063 -153220601 - MIR SINE MIR -18 244 49 1364 198 17 40 chr1 128973116 128973414 -153220250 - AluJo SINE Alu -21 291 1 1299 208 51 55 chr1 128974625 128974686 -153218978 - MLT1H1 LTR MaLR 0 555 495 2307 109 0 0 chr1 128974686 128974979 -153218685 - AluSc SINE Alu -16 293 1 1299 208 51 55 chr1 128974979 128975397 -153218267 - MLT1H1 LTR MaLR -60 495 5 427 271 97 7 chr1 128975461 128975616 -153218048 - MIR3 SINE MIR -7 201 33 879 243 0 5 chr1 128976338 128976527 -153217137 - MER5A DNA MER1_type -1 188 1 368 171 63 0 chr1 128976629 128976716 -153216948 + MER5A DNA MER1_type 4 97 -92 378 0 0 0 chr1 128977756 128977798 -153215866 + (TG)n Simple_repeat Simple_repeat 2 43 0 3619 254 144 34 chr1 128978278 128979787 -153213877 - L2 LINE L2 -113 3200 1858 1899 146 17 0 chr1 128979787 128980081 -153213583 + AluJb SINE Alu 7 305 -7 3619 254 144 34 chr1 128980081 128980294 -153213370 - L2 LINE L2 -1455 1858 1670 1100 155 5 31 chr1 128980294 128980487 -153213177 + MER5A DNA MER1_type 1 188 -1 3619 254 144 34 chr1 128980487 128980581 -153213083 - L2 LINE L2 -1643 1670 1194 604 275 60 23 chr1 128980583 128980801 -153212863 + MLT1L LTR MaLR 149 374 -241 181 329 73 0 chr1 128980956 128981038 -153212626 + MIR SINE MIR 117 204 -58 843 200 13 13 chr1 128982618 128982773 -153210891 - FRAM SINE Alu -21 155 1 300 267 53 53 chr1 128982774 128982905 -153210759 + L2 LINE L2 3137 3267 -5 1214 224 93 10 chr1 128982915 128983228 -153210436 - MER58B DNA MER1_type 0 341 3 249 285 159 33 chr1 128983687 128983838 -153209826 - MIR SINE MIR -52 210 41 190 329 57 0 chr1 128984392 128984462 -153209202 + MIR SINE MIR 82 155 -107 854 263 6 0 chr1 128986205 128986380 -153207284 + MER45A DNA AcHobo 2 177 -1 283 264 64 43 chr1 128986409 128986549 -153207115 + MLT1L LTR MaLR 55 197 -418 429 298 43 32 chr1 128986659 128986847 -153206817 + MLT1J LTR MaLR 230 419 -92 429 324 4 37 chr1 128987981 128988222 -153205442 + L1MC4a LINE L1 3852 4084 -2062 1003 218 18 15 chr1 128988234 128988565 -153205099 + MER96B DNA MER1_type? 1 417 0 551 211 168 6 chr1 128988678 128988839 -153204825 + MIR SINE MIR 54 240 -22 309 297 84 57 chr1 128989023 128989653 -153204011 + L1MC4a LINE L1 4417 5063 -1083 306 219 99 0 chr1 128989922 128990058 -153203606 + L1M2 LINE L1 5272 5431 -720 1961 132 7 10 chr1 128990143 128990463 -153203201 - AluSx SINE Alu 0 312 1 2824 126 11 7 chr1 128990491 128990929 -153202735 - L1MA2 LINE L1 0 6304 5865 228 386 157 0 chr1 128991024 128991164 -153202500 - L2 LINE L2 -9 3263 3102 7274 122 29 3 chr1 128991169 128992872 -153200792 - L1MA3 LINE L1 -444 5861 4112 538 242 46 115 chr1 128992848 128993259 -153200405 + L1MC4a LINE L1 5517 5898 -223 * 339 241 23 0 chr1 128993260 128993347 -153200317 + L2 LINE L2 3221 3309 -4 440 287 28 21 chr1 128993465 128993608 -153200056 + MIR SINE MIR 48 191 -71 229 333 100 72 chr1 128993945 128994266 -153199398 - L2 LINE L2 -9 3263 2934 1822 184 7 0 chr1 128994348 128994770 -153198894 + AluJb SINE Alu 3 426 0 688 346 65 14 chr1 128994774 128995190 -153198474 - L2 LINE L2 -439 2875 2439 362 286 27 14 chr1 128995190 128995337 -153198327 - L1M4 LINE L1 -1817 4329 4181 351 218 13 0 chr1 128995352 128995430 -153198234 - LTR33A LTR ERVL -1 522 444 278 282 0 0 chr1 128996313 128996384 -153197280 + L2 LINE L2 3242 3312 -1 21 71 0 0 chr1 128997707 128997749 -153195915 + AT_rich Low_complexity Low_complexity 1 42 0 551 222 120 54 chr1 128998085 128998424 -153195240 + MLT1J LTR MaLR 60 460 -51 653 260 141 0 chr1 128998980 128999207 -153194457 + MIR SINE MIR 3 261 -1 1093 191 27 66 chr1 128999687 128999943 -153193721 + AluJo SINE Alu 49 294 -18 988 171 48 16 chr1 129000412 129000599 -153193065 + AluJo SINE Alu 120 312 0 1237 292 108 11 chr1 129000685 129001158 -153192506 - MLT1L LTR MaLR -8 607 89 2380 76 6 22 chr1 129001608 129001923 -153191741 - AluSp SINE Alu -3 310 1 797 301 44 16 chr1 129052140 129052765 -153140899 - L1ME3 LINE L1 -335 5827 5188 1074 176 75 30 chr1 129052788 129053055 -153140609 - MLT1D LTR MaLR 0 505 227 539 166 217 32 chr1 129053202 129053359 -153140305 + MER5A DNA MER1_type 4 189 0 537 305 80 32 chr1 129053455 129054107 -153139557 - L1ME3 LINE L1 -1563 4583 3901 2023 120 60 0 chr1 129054355 129054638 -153139026 + AluSp SINE Alu 1 300 -13 312 327 48 0 chr1 129054671 129054775 -153138889 - L2 LINE L2 -2 3311 3203 267 209 11 88 chr1 129054820 129054911 -153138753 + MIR SINE MIR 74 157 -105 268 316 88 6 chr1 129054960 129055131 -153138533 - MLT1L LTR MaLR -55 560 376 343 345 44 26 chr1 129055190 129055416 -153138248 - MLT1L LTR MaLR -364 251 22 754 159 18 77 chr1 129055416 129055586 -153138078 + MER21A LTR ERV1 1 160 -771 3476 164 36 136 chr1 129055710 129056683 -153136981 + MER21A LTR ERV1 27 902 -29 230 319 11 11 chr1 129056716 129056807 -153136857 + MIR SINE MIR 167 257 -5 207 292 15 15 chr1 129056983 129057048 -153136616 - L2 LINE L2 -219 3053 2989 1969 197 18 52 chr1 129057748 129058195 -153135469 + MER101 LTR ERV1 5 436 -38 252 290 61 30 chr1 129059429 129059560 -153134104 + L2 LINE L2 3137 3271 -1 471 118 59 0 chr1 129060367 129060520 -153133144 + (TA)n Simple_repeat Simple_repeat 1 162 0 2340 104 0 0 chr1 129060520 129060817 -153132847 - AluSg SINE Alu -13 297 1 309 26 0 0 chr1 129060896 129060934 -153132730 + (CA)n Simple_repeat Simple_repeat 1 38 0 215 297 31 0 chr1 129061126 129061190 -153132474 - L2 LINE L2 -23 3249 3184 1551 207 47 51 chr1 129061905 129062374 -153131290 + MLT1C LTR MaLR 1 467 0 200 298 75 100 chr1 129062405 129062663 -153131001 - L2 LINE L2 -1041 2273 2029 508 91 0 0 chr1 129062663 129062740 -153130924 - L1PA7 LINE L1 0 6154 6078 200 298 75 100 chr1 129062740 129062920 -153130744 - L2 LINE L2 -1285 2029 1846 21 57 0 0 chr1 129064272 129064307 -153129357 + AT_rich Low_complexity Low_complexity 1 35 0 2092 121 3 57 chr1 129064307 129064638 -153129026 - AluSq SINE Alu 0 313 1 396 239 88 0 chr1 129064938 129065051 -153128613 - MIR3 SINE MIR -84 124 2 1959 172 8 14 chr1 129065756 129066123 -153127541 + MLT1A1 LTR MaLR 1 365 0 206 259 49 25 chr1 129066123 129066204 -153127460 + L2 LINE L2 2624 2706 -608 256 303 45 84 chr1 129066466 129066644 -153127020 + L3 LINE CR1 319 489 -1088 493 190 44 143 chr1 129066696 129066956 -153126708 - MLT1J2 LTR MaLR 0 450 237 2091 124 0 34 chr1 129066956 129067095 -153126569 + AluSx SINE Alu 1 143 -169 2313 102 0 0 chr1 129067095 129067388 -153126276 + AluY SINE Alu 1 293 -18 2091 124 0 34 chr1 129067388 129067571 -153126093 + AluSx SINE Alu 143 312 0 493 190 44 143 chr1 129067571 129067787 -153125877 - MLT1J2 LTR MaLR -213 237 1 199 276 16 73 chr1 129067788 129067911 -153125753 + MIR SINE MIR 86 201 -61 2009 163 90 10 chr1 129067943 129068354 -153125310 + L1ME1 LINE L1 5533 5976 -190 299 278 68 42 chr1 129068563 129068754 -153124910 - MIR SINE MIR -61 201 6 449 333 26 5 chr1 129069307 129069496 -153124168 - MIR SINE MIR -50 212 20 180 0 0 0 chr1 129069541 129069561 -153124103 + (T)n Simple_repeat Simple_repeat 1 20 0 1258 131 58 0 chr1 129069804 129069995 -153123669 + MER1B DNA MER1_type 138 339 0 5069 131 34 38 chr1 129070038 129070913 -153122751 + MER4D LTR ERV1 1 872 0 440 317 79 6 chr1 129071918 129072082 -153121582 + MIR3 SINE MIR 20 195 -13 1022 156 0 40 chr1 129072204 129072377 -153121287 - AluJo SINE Alu -111 201 36 232 306 120 0 chr1 129073583 129073691 -153119973 + MIR SINE MIR 75 195 -67 1321 253 62 56 chr1 129073806 129074289 -153119375 + L1ME2 LINE L1 5426 5911 -253 * 3363 166 63 24 chr1 129073879 129074541 -153119123 + L1MB2 LINE L1 5476 6163 -8 218 324 69 0 chr1 129074684 129074786 -153118878 - MIR SINE MIR -54 208 100 902 240 21 13 chr1 129075235 129075468 -153118196 - MIR SINE MIR 0 262 28 324 117 67 50 chr1 129075828 129075888 -153117776 - MLT1K LTR MaLR -4 584 524 333 339 15 8 chr1 129076085 129076215 -153117449 + MER5A DNA MER1_type 59 189 0 558 268 0 43 chr1 129076343 129076481 -153117183 + L2 LINE L2 3141 3272 0 272 193 101 67 chr1 129076525 129076644 -153117020 - MIR SINE MIR -70 192 70 216 179 18 71 chr1 129077751 129077807 -153115857 - L2 LINE L2 -6 3266 3214 197 327 0 0 chr1 129078537 129078589 -153115075 - L2 LINE L2 -70 3202 3151 870 218 105 66 chr1 129079613 129079643 -153114021 - LTR56 LTR ERV1 0 445 418 1930 148 7 3 chr1 129079643 129079933 -153113731 + AluSx SINE Alu 1 291 -21 870 218 105 66 chr1 129079933 129080329 -153113335 - LTR56 LTR ERV1 -27 418 2 216 235 0 39 chr1 129080520 129080571 -153113093 - L2 LINE L2 -8 3264 3216 1244 145 36 52 chr1 129080930 129081179 -153112485 + AluJo SINE Alu 42 286 -26 29 0 0 0 chr1 129081183 129081212 -153112452 + AT_rich Low_complexity Low_complexity 1 29 0 216 264 286 0 chr1 129081473 129081564 -153112100 + MIR SINE MIR 88 204 -58 24 0 0 0 chr1 129081609 129081633 -153112031 + AT_rich Low_complexity Low_complexity 1 24 0 230 56 28 0 chr1 129081908 129081944 -153111720 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 1239 53 0 13 chr1 129081944 129082086 -153111578 - MER107 DNA MER1_type -52 145 4 213 319 33 11 chr1 129083226 129083317 -153110347 + MIR SINE MIR 94 186 -76 658 256 77 30 chr1 129085106 129085403 -153108261 - L1MC4a LINE L1 -1923 5885 5575 300 185 109 22 chr1 129085902 129085994 -153107670 - MLT1F LTR MaLR -55 487 388 1184 286 176 10 chr1 129086107 129086596 -153107068 - MLT1K LTR MaLR -17 571 2 327 313 106 34 chr1 129086745 129086924 -153106740 - L3 LINE CR1 -1 1576 1385 457 259 14 22 chr1 129086974 129087113 -153106551 - MIR SINE MIR -29 233 96 1029 313 189 17 chr1 129087162 129087403 -153106261 - L3 LINE CR1 -222 1355 1157 2053 122 7 10 chr1 129087403 129087697 -153105967 + AluSx SINE Alu 1 293 -19 1029 313 189 17 chr1 129087697 129088234 -153105430 - L3 LINE CR1 -420 1157 443 668 302 0 0 chr1 129088350 129088539 -153105125 + MIR SINE MIR 63 251 -11 1879 135 43 40 chr1 129088645 129088876 -153104788 - L1MA4 LINE L1 -6 6294 6060 2017 141 7 3 chr1 129088876 129089174 -153104490 - AluJb SINE Alu -13 299 1 1879 135 43 40 chr1 129089174 129089313 -153104351 - L1MA4 LINE L1 -240 6060 5923 221 169 0 46 chr1 129089687 129089752 -153103912 + CT-rich Low_complexity Low_complexity 2 63 0 1780 181 0 0 chr1 129089924 129090206 -153103458 + AluJb SINE Alu 1 282 -30 450 204 0 0 chr1 129090209 129090322 -153103342 + GA-rich Low_complexity Low_complexity 3 115 0 283 235 122 0 chr1 129090832 129090930 -153102734 - MIR SINE MIR -117 145 36 562 42 34 50 chr1 129091011 129091130 -153102534 + (TTTC)n Simple_repeat Simple_repeat 1 117 0 2097 123 16 19 chr1 129091156 129091466 -153102198 - AluSx SINE Alu -3 309 1 1728 192 99 19 chr1 129091500 129091932 -153101732 - MLT1C LTR MaLR 0 467 1 29 0 0 0 chr1 129092056 129092085 -153101579 + AT_rich Low_complexity Low_complexity 1 29 0 276 183 191 61 chr1 129093286 129093417 -153100247 + L2 LINE L2 3162 3309 -4 2778 131 7 37 chr1 129093495 129093954 -153099710 - MER65A LTR ERV1 0 445 1 435 264 121 6 chr1 129094216 129094390 -153099274 + MER117 DNA MER1_type 4 197 0 933 213 23 19 chr1 129094569 129094785 -153098879 + U3 snRNA snRNA 1 217 0 771 262 14 9 chr1 129095588 129095798 -153097866 + MIR SINE MIR 50 260 -2 804 296 61 31 chr1 129095856 129096351 -153097313 + L1MC/D LINE L1 5174 5670 -482 184 306 0 0 chr1 129096353 129096402 -153097262 + L2 LINE L2 3199 3247 -25 434 246 29 18 chr1 129096402 129096553 -153097111 + L1MC/D LINE L1 5660 5811 -353 10680 184 34 88 chr1 129096658 129097617 -153096047 - L1M2 LINE L1 -620 6379 5369 772 194 0 22 chr1 129097617 129097756 -153095908 - AluJo SINE Alu -175 137 2 10680 184 34 88 chr1 129097756 129098529 -153095135 - L1M2 LINE L1 -1630 5369 4556 1241 167 0 20 chr1 129098529 129098733 -153094931 + AluJb SINE Alu 107 306 -6 10680 184 34 88 chr1 129098733 129100516 -153093148 - L1M2 LINE L1 -2443 4556 2823 21 57 0 0 chr1 129100594 129100629 -153093035 + AT_rich Low_complexity Low_complexity 1 35 0 2148 133 0 0 chr1 129101398 129101692 -153091972 + AluSx SINE Alu 1 294 -18 217 266 64 73 chr1 129101912 129102021 -153091643 - L2 LINE L2 -5 3267 3160 187 267 0 0 chr1 129102755 129102800 -153090864 + MIR SINE MIR 56 100 -108 393 270 29 22 chr1 129103166 129103303 -153090361 - MIR SINE MIR -98 164 27 228 229 181 0 chr1 129104295 129104378 -153089286 - MIR3 SINE MIR -26 182 85 844 204 44 0 chr1 129104719 129104900 -153088764 + MER5A DNA MER1_type 1 189 0 186 214 0 204 chr1 129105152 129105255 -153088409 + L2 LINE L2 3183 3264 -49 948 224 10 39 chr1 129105268 129105473 -153088191 + MER58A DNA MER1_type 26 224 0 262 228 0 0 chr1 129105475 129105532 -153088132 + L2 LINE L2 3256 3312 -1 430 272 35 0 chr1 129105620 129105734 -153087930 + MIR SINE MIR 38 155 -107 635 219 0 8 chr1 129108785 129108940 -153084724 - FLAM_C SINE Alu 0 154 1 231 143 0 0 chr1 129110000 129110035 -153083629 + Charlie8 DNA MER1_type 1393 1427 -990 255 280 11 32 chr1 129110201 129110294 -153083370 + MIR SINE MIR 71 161 -101 4604 125 20 4 chr1 129110461 129111167 -153082497 + L1PA16 LINE L1 5383 6099 -67 410 277 0 0 chr1 129111172 129111273 -153082391 - L1ME LINE L1 -368 5802 5702 342 71 29 86 chr1 129111292 129111362 -153082302 + L1PA16 LINE L1 6101 6166 0 436 243 51 5 chr1 129111484 129111632 -153082032 + MIR SINE MIR 30 187 -21 1543 141 4 40 chr1 129111657 129111933 -153081731 + AluJb SINE Alu 3 268 -44 885 175 6 29 chr1 129112083 129112254 -153081410 - MER97a DNA MER1_type? -659 235 69 2195 104 0 7 chr1 129112254 129112552 -153081112 + AluSg SINE Alu 1 296 -14 853 169 74 0 chr1 129112552 129112700 -153080964 + AluSg/x SINE Alu 132 290 -20 427 209 97 17 chr1 129113031 129113188 -153080476 - L1ME3A LINE L1 -172 5990 5822 4316 155 54 48 chr1 129113188 129114504 -153079160 - LTR12 LTR ERV1 -21 2417 31 1159 259 32 0 chr1 129114504 129114786 -153078878 - L1ME3A LINE L1 -319 5851 5561 217 235 15 29 chr1 129115070 129115138 -153078526 + A-rich Low_complexity Low_complexity 2 68 0 30 27 0 0 chr1 129115232 129115269 -153078395 + AT_rich Low_complexity Low_complexity 1 37 0 341 361 33 33 chr1 129115600 129115968 -153077696 + L2 LINE L2 2563 2930 -384 24 0 0 0 chr1 129115978 129116002 -153077662 + AT_rich Low_complexity Low_complexity 1 24 0 251 88 62 25 chr1 129116100 129116180 -153077484 + (TA)n Simple_repeat Simple_repeat 1 83 0 229 65 0 0 chr1 129116222 129116268 -153077396 + LTR66 LTR ERVL 394 439 -171 1951 143 10 3 chr1 129116290 129116584 -153077080 - AluSx SINE Alu -16 296 1 35 71 0 0 chr1 129116649 129116719 -153076945 + AT_rich Low_complexity Low_complexity 1 70 0 2240 164 55 12 chr1 129116727 129117149 -153076515 - L1MB8 LINE L1 -16 6162 5723 907 208 0 0 chr1 129117197 129117365 -153076299 - FRAM SINE Alu 0 176 9 1609 158 3 79 chr1 129117475 129117803 -153075861 + AluJb SINE Alu 1 303 -9 498 296 136 10 chr1 129118184 129118390 -153075274 + MIR SINE MIR 20 251 -11 653 288 116 21 chr1 129118485 129118718 -153074946 - MIR SINE MIR 0 262 8 222 302 15 12 chr1 129119201 129119293 -153074371 - MIR SINE MIR -64 144 86 5369 177 49 38 chr1 129119515 129121524 -153072140 - L1MB7 LINE L1 -5 6415 4392 871 203 36 82 chr1 129121516 129121857 -153071807 - L1MB7 LINE L1 -3823 2559 2204 * 846 98 0 0 chr1 129121857 129121979 -153071685 + (TA)n Simple_repeat Simple_repeat 1 122 0 252 0 0 0 chr1 129121978 129122006 -153071658 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 871 203 36 82 chr1 129121979 129122082 -153071582 - L1MB7 LINE L1 -4178 2204 2161 2071 212 58 12 chr1 129122352 129122851 -153070813 + Charlie1b DNA MER1_type 1 522 -1 456 304 103 92 chr1 129123056 129123935 -153069729 + L2 LINE L2 1952 2840 -474 293 324 129 25 chr1 129123962 129124280 -153069384 + L2 LINE L2 2947 3297 -16 2333 119 0 0 chr1 129124893 129125203 -153068461 - AluSx SINE Alu -1 311 2 180 77 0 0 chr1 129126017 129126043 -153067621 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 193 244 98 12 chr1 129126971 129127053 -153066611 + MIR SINE MIR 60 148 -60 1866 98 0 0 chr1 129127556 129127790 -153065874 - AluSg SINE Alu -76 234 1 298 292 22 0 chr1 129128519 129128608 -153065056 - MIR3 SINE MIR -46 162 72 266 340 10 0 chr1 129128947 129129050 -153064614 + MER91A DNA MER1_type 5 108 -88 241 104 0 42 chr1 129129338 129129386 -153064278 + L2 LINE L2 3014 3059 -213 1237 193 50 62 chr1 129129518 129129703 -153063961 + MER33 DNA MER1_type 1 182 -2403 1488 156 37 65 chr1 129129703 129129985 -153063679 + AluJo SINE Alu 1 274 -38 186 103 0 0 chr1 129129985 129130014 -153063650 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1488 156 37 65 chr1 129130014 129130052 -153063612 + AluJo SINE Alu 274 312 0 1237 193 50 62 chr1 129130052 129130188 -153063476 + MER33 DNA MER1_type 182 318 -6 212 377 58 0 chr1 129130194 129130263 -153063401 + L2 LINE L2 3151 3223 -49 625 182 146 0 chr1 129130496 129130606 -153063058 - AluSq/x SINE Alu -186 127 2 424 286 113 81 chr1 129130978 129131436 -153062228 - L1ME4a LINE L1 0 6121 5649 269 255 177 43 chr1 129131966 129132107 -153061557 + MIR SINE MIR 59 218 -44 604 326 49 5 chr1 129132286 129132510 -153061154 - MIR SINE MIR -6 256 23 493 264 195 59 chr1 129132641 129133047 -153060617 - MLT1K LTR MaLR -30 558 98 580 233 119 11 chr1 129133410 129133586 -153060078 - MLT1L LTR MaLR -48 567 373 1856 138 66 0 chr1 129134033 129134322 -153059342 - AluSg SINE Alu -2 308 1 2641 265 35 16 chr1 129134830 129135570 -153058094 + MER69 DNA AcHobo 11 764 -462 1718 175 63 62 chr1 129135631 129135696 -153057968 + MER69 DNA AcHobo 2017 2080 -446 2636 27 0 3 chr1 129135696 129135996 -153057668 + AluY SINE Alu 1 299 -12 1718 175 63 62 chr1 129135996 129136313 -153057351 + MER69 DNA AcHobo 2080 2403 -123 1657 174 14 14 chr1 129136313 129136607 -153057057 + AluJo SINE Alu 1 294 -18 1718 175 63 62 chr1 129136607 129136727 -153056937 + MER69 DNA AcHobo 2403 2521 -5 274 316 32 0 chr1 129136932 129137027 -153056637 + MIR3 SINE MIR 88 185 -23 272 239 0 30 chr1 129138307 129138429 -153055235 + (CATATA)n Simple_repeat Simple_repeat 1 118 0 275 302 0 0 chr1 129138985 129139068 -153054596 - MIR SINE MIR -63 145 73 204 327 159 0 chr1 129139424 129139537 -153054127 + MIR SINE MIR 86 216 -46 814 290 35 27 chr1 129139617 129139876 -153053788 - MIR SINE MIR 0 262 2 696 164 0 0 chr1 129139893 129140003 -153053661 - Tigger3(Golem) DNA MER2_type 0 3038 2929 234 0 0 0 chr1 129140159 129140185 -153053479 + (TA)n Simple_repeat Simple_repeat 2 27 0 207 0 0 0 chr1 129140184 129140207 -153053457 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 229 130 0 0 chr1 129140207 129140253 -153053411 + LTR66 LTR ERVL 394 439 -171 * 237 152 0 0 chr1 129140217 129140263 -153053401 - LTR66 LTR ERVL -171 439 394 1684 130 15 11 chr1 129140314 129140576 -153053088 + AluSx SINE Alu 36 298 -14 1544 153 0 8 chr1 129141097 129141345 -153052319 + L1MD3 LINE L1 7742 7987 -8 25 75 0 0 chr1 129141531 129141584 -153052080 + AT_rich Low_complexity Low_complexity 1 53 0 978 302 37 19 chr1 129141679 129141800 -153051864 - L2 LINE L2 -37 3276 3159 1219 147 27 0 chr1 129141800 129141984 -153051680 + MER5A DNA MER1_type 1 189 0 978 302 37 19 chr1 129141984 129142239 -153051425 - L2 LINE L2 -154 3159 2893 977 220 4 90 chr1 129142985 129143294 -153050370 - Charlie4a DNA MER1_type -1 507 223 272 367 0 10 chr1 129143359 129143457 -153050207 + MIR SINE MIR 48 144 -64 585 206 73 15 chr1 129144188 129144324 -153049340 - MER5A DNA MER1_type 0 189 46 269 269 48 10 chr1 129144322 129144426 -153049238 + MIR SINE MIR 99 206 -56 * 202 371 11 0 chr1 129144735 129144824 -153048840 - L2 LINE L2 -508 2806 2717 462 331 58 36 chr1 129144833 129145198 -153048466 - L2 LINE L2 -832 2482 2110 219 341 37 30 chr1 129148292 129148427 -153045237 - MIR SINE MIR -115 147 12 432 314 35 23 chr1 129148739 129148911 -153044753 - MER5B DNA MER1_type -2 176 3 663 253 55 8 chr1 129151024 129151351 -153042313 + LTR16A LTR ERVL 57 450 0 406 307 179 7 chr1 129151515 129151655 -153042009 + MER5A DNA MER1_type 26 189 0 1870 217 156 36 chr1 129153377 129153567 -153040097 + L1MDb LINE L1 790 956 -5450 1886 180 27 124 chr1 129153567 129154117 -153039547 - MLT1D LTR MaLR -4 501 5 1870 217 156 36 chr1 129154117 129154765 -153038899 + L1MDb LINE L1 956 1682 -4724 644 268 84 61 chr1 129154853 129154913 -153038751 + L1ME4a LINE L1 5533 5590 -531 1863 128 0 0 chr1 129154913 129155171 -153038493 - AluSx SINE Alu -7 305 48 644 268 84 61 chr1 129155171 129155670 -153037994 + L1ME4a LINE L1 5590 6105 -16 2052 218 49 51 chr1 129155848 129156375 -153037289 - MLT1F LTR MaLR -15 527 2 938 334 160 16 chr1 129157036 129157587 -153036077 + L3 LINE CR1 422 1051 -526 1903 201 43 0 chr1 129157860 129158209 -153035455 + MLT1A1 LTR MaLR 2 365 0 2884 201 40 42 chr1 129158223 129158641 -153035023 + MLT1E3 LTR MaLR 1 419 -205 1604 157 48 41 chr1 129158641 129158935 -153034729 + AluJo SINE Alu 1 296 -16 2884 201 40 42 chr1 129158935 129159139 -153034525 + MLT1E3 LTR MaLR 419 622 -2 988 165 8 125 chr1 129159344 129159592 -153034072 - MER20 DNA MER1_type 0 219 1 542 311 117 19 chr1 129159599 129160011 -153033653 + MLT1L LTR MaLR 163 614 -1 216 333 200 0 chr1 129160129 129160264 -153033400 - MIR SINE MIR -67 195 34 438 272 47 30 chr1 129161100 129161269 -153032395 - MIR SINE MIR -6 256 85 731 198 28 33 chr1 129161454 129161636 -153032028 - MIR SINE MIR 0 262 82 475 293 77 29 chr1 129161657 129161865 -153031799 - MIR SINE MIR -15 247 30 1138 154 49 87 chr1 129162746 129163032 -153030632 + ORSL DNA AcHobo 1 275 0 241 312 175 0 chr1 129163397 129163551 -153030113 - L2 LINE L2 -809 2505 2325 260 380 0 0 chr1 129163562 129163662 -153030002 + L2 LINE L2 3169 3268 -4 588 316 107 5 chr1 129163789 129164004 -153029660 + LTR16C LTR ERVL 81 317 -174 1666 180 55 39 chr1 129164190 129164623 -153029041 - L1M4 LINE L1 -3322 2824 2385 359 221 125 0 chr1 129164622 129164726 -153028938 + L1MB3 LINE L1 2904 3020 -3126 * 822 240 5 36 chr1 129164727 129164919 -153028745 + AluJo SINE Alu 126 311 -1 847 120 11 43 chr1 129164923 129165107 -153028557 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 1227 206 57 11 chr1 129165107 129165475 -153028189 + L1MB3 LINE L1 3035 3419 -2727 1471 174 27 86 chr1 129165475 129165863 -153027801 - MLT1A1 LTR MaLR -3 454 1 259 108 0 0 chr1 129165867 129165904 -153027760 + U3 snRNA snRNA 1 37 -180 7600 186 37 60 chr1 129165916 129167547 -153026117 + L1MB3 LINE L1 3419 4948 -1235 207 0 0 0 chr1 129167547 129167570 -153026094 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 7600 186 37 60 chr1 129167570 129168728 -153024936 + L1MB3 LINE L1 4948 6131 -52 1059 203 14 23 chr1 129168733 129168950 -153024714 + AluJb SINE Alu 84 298 -14 2189 105 24 0 chr1 129168973 129169269 -153024395 - AluSq SINE Alu -10 303 1 268 299 79 16 chr1 129169272 129169399 -153024265 - L3 LINE CR1 -311 1266 1132 896 291 20 8 chr1 129169437 129169681 -153023983 - MIR SINE MIR -1 261 15 2088 130 0 19 chr1 129169846 129170161 -153023503 + AluSx SINE Alu 3 311 -1 225 213 5 202 chr1 129170163 129170351 -153023313 + HAL1b LINE L1 1191 1341 -7 3881 193 50 6 chr1 129170355 129171143 -153022521 - L1MB7 LINE L1 -9 6175 5354 1073 297 30 14 chr1 129171191 129171561 -153022103 - L3 LINE CR1 -483 1094 719 1928 158 0 0 chr1 129171632 129171944 -153021720 - AluJb SINE Alu 0 312 1 1525 210 7 4 chr1 129172027 129172308 -153021356 + AluJb SINE Alu 1 282 -30 812 114 8 0 chr1 129172310 129172441 -153021223 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 1479 167 28 4 chr1 129173390 129173642 -153020022 - AluSx SINE Alu -13 299 42 530 335 54 31 chr1 129173653 129174809 -153018855 - L1ME LINE L1 -505 5659 4475 26 30 0 0 chr1 129174895 129174928 -153018736 + AT_rich Low_complexity Low_complexity 1 33 0 183 326 158 0 chr1 129175217 129175312 -153018352 + MIR SINE MIR 30 139 -69 468 312 74 41 chr1 129176097 129176237 -153017427 + L2 LINE L2 3029 3163 -150 192 77 0 0 chr1 129176237 129176263 -153017401 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 468 312 74 41 chr1 129176263 129176391 -153017273 + L2 LINE L2 3163 3306 -7 21 0 0 0 chr1 129177266 129177287 -153016377 + AT_rich Low_complexity Low_complexity 1 21 0 262 263 30 0 chr1 129177495 129177594 -153016070 + L1ME4a LINE L1 6020 6121 0 397 346 0 8 chr1 129178516 129178646 -153015018 - MER5B DNA MER1_type -49 129 1 1494 101 0 0 chr1 129179975 129180164 -153013500 + AluSx SINE Alu 1 189 -123 464 131 0 0 chr1 129180166 129180262 -153013402 + AluSx SINE Alu 227 322 0 207 88 0 0 chr1 129180328 129180362 -153013302 + (TG)n Simple_repeat Simple_repeat 1 34 0 285 308 11 0 chr1 129182372 129182463 -153011201 - MIR SINE MIR -18 244 153 190 191 16 16 chr1 129182562 129182625 -153011039 + (CCA)n Simple_repeat Simple_repeat 1 63 0 486 208 10 0 chr1 129182761 129182857 -153010807 - FLAM_A SINE Alu 0 142 46 577 342 56 46 chr1 129183398 129183976 -153009688 + L2 LINE L2 2678 3260 -12 231 36 0 0 chr1 129184680 129184708 -153008956 + (T)n Simple_repeat Simple_repeat 1 28 0 2374 78 3 3 chr1 129185173 129185482 -153008182 + AluY SINE Alu 1 309 -2 432 163 0 12 chr1 129185482 129185562 -153008102 + AluS SINE Alu 230 308 -2 2120 141 0 0 chr1 129185567 129185871 -153007793 + AluSx SINE Alu 1 304 -8 298 200 29 14 chr1 129186717 129186787 -153006877 + MIR3 SINE MIR 110 180 -28 2176 113 0 13 chr1 129187337 129187647 -153006017 - AluSc SINE Alu -3 306 1 397 251 85 88 chr1 129189127 129189422 -153004242 - L1M2 LINE L1 -5878 971 678 317 329 65 74 chr1 129189511 129189985 -153003679 - L1M2 LINE L1 -5701 1148 679 328 253 99 0 chr1 129191248 129191339 -153002325 - MIR SINE MIR -87 121 22 242 233 22 67 chr1 129196207 129196297 -152997367 - MIR SINE MIR -111 151 66 2299 86 3 0 chr1 129197946 129198238 -152995426 + AluSg1 SINE Alu 1 293 -16 661 276 20 15 chr1 129199480 129199683 -152993981 - MIR SINE MIR -56 206 3 1237 92 46 15 chr1 129201581 129201776 -152991888 + MER21A LTR ERV1 1 201 -730 643 103 161 84 chr1 129201775 129201898 -152991766 + MER21A LTR ERV1 758 897 -34 * 2518 87 3 0 chr1 129201898 129202210 -152991454 + AluSp SINE Alu 1 313 0 643 103 161 84 chr1 129202210 129202241 -152991423 + MER21A LTR ERV1 897 924 -7 212 273 91 23 chr1 129202298 129202386 -152991278 - MIR SINE MIR -8 254 161 402 261 106 7 chr1 129202409 129202551 -152991113 + MIR SINE MIR 100 255 -7 22 0 0 0 chr1 129202590 129202612 -152991052 + AT_rich Low_complexity Low_complexity 1 22 0 204 97 0 0 chr1 129206572 129206603 -152987061 + (T)n Simple_repeat Simple_repeat 1 31 0 202 254 136 55 chr1 129210638 129210748 -152982916 + L2 LINE L2 3149 3267 -5 278 320 90 43 chr1 129211753 129211802 -152981862 - L1ME LINE L1 -354 5767 5722 2276 116 0 3 chr1 129211802 129212105 -152981559 - AluSx SINE Alu -10 302 1 278 320 90 43 chr1 129212105 129212333 -152981331 - L1ME LINE L1 -399 5722 5477 218 231 19 0 chr1 129213095 129213147 -152980517 - MIR SINE MIR -208 54 2 1881 117 57 0 chr1 129213377 129213658 -152980006 - AluSx SINE Alu -15 297 1 606 170 195 19 chr1 129220881 129221040 -152972624 + MER5A DNA MER1_type 3 189 0 200 270 14 54 chr1 129223183 129223257 -152970407 + L2 LINE L2 2244 2314 -1000 918 178 86 0 chr1 129223718 129223892 -152969772 + MER5A DNA MER1_type 1 189 0 403 300 53 7 chr1 129225254 129225404 -152968260 + MIR SINE MIR 92 248 -14 400 210 70 63 chr1 129225565 129225708 -152967956 - MIR SINE MIR -112 150 7 580 115 135 39 chr1 129226323 129226452 -152967212 - FLAM_C SINE Alu 0 143 5 297 197 219 44 chr1 129226726 129226863 -152966801 - MIR SINE MIR -6 256 96 611 258 28 17 chr1 129227107 129227285 -152966379 + MLT1J1 LTR MaLR 3 182 -264 811 211 17 0 chr1 129227349 129227524 -152966140 + MER5B DNA MER1_type 1 178 0 2099 94 0 21 chr1 129227535 129227821 -152965843 + AluSq SINE Alu 34 313 0 691 175 94 53 chr1 129227842 129228013 -152965651 + MER5A DNA MER1_type 1 178 -11 525 197 105 66 chr1 129228013 129228165 -152965499 + MLT1J2 LTR MaLR 244 401 -49 845 184 92 20 chr1 129228229 129228425 -152965239 - MER63A DNA MER1_type 0 210 1 998 173 9 53 chr1 129228667 129228893 -152964771 - MER20 DNA MER1_type -2 217 2 558 221 72 51 chr1 129229205 129229400 -152964264 + MIR SINE MIR 1 199 -63 212 341 73 16 chr1 129229423 129229546 -152964118 - L2 LINE L2 -5 3267 3138 592 183 29 0 chr1 129229818 129229922 -152963742 - U6 snRNA snRNA 0 107 1 564 225 52 64 chr1 129230060 129230309 -152963355 - L1MC5 LINE L1 -35 7926 7681 201 74 0 0 chr1 129230321 129230348 -152963316 + (T)n Simple_repeat Simple_repeat 1 27 0 587 234 88 80 chr1 129230492 129231000 -152962664 - L1ME LINE L1 -455 5711 5209 747 282 159 12 chr1 129231049 129231471 -152962193 + MLT1L LTR MaLR 119 602 -13 410 238 0 0 chr1 129231684 129231764 -152961900 + MER112 DNA MER1_type 181 260 0 180 77 0 0 chr1 129232524 129232550 -152961114 + (CA)n Simple_repeat Simple_repeat 1 26 0 432 254 125 36 chr1 129233001 129233225 -152960439 + MIR SINE MIR 8 251 -11 1868 149 10 7 chr1 129233244 129233532 -152960132 - AluJb SINE Alu -18 294 6 222 200 33 0 chr1 129234239 129234299 -152959365 - MIR SINE MIR -33 229 168 461 297 44 50 chr1 129235130 129235304 -152958360 - L1ME4a LINE L1 -238 5883 5710 2043 95 0 28 chr1 129235304 129235622 -152958042 - AluSq SINE Alu 0 313 23 461 297 44 50 chr1 129235622 129235767 -152957897 - L1ME4a LINE L1 -411 5710 5566 2639 33 7 0 chr1 129235857 129236163 -152957501 - AluY SINE Alu -3 308 1 1354 228 155 28 chr1 129236961 129237360 -152956304 + LTR16A LTR ERVL 1 450 0 1687 165 70 88 chr1 129237578 129238021 -152955643 + MLT1D LTR MaLR 71 505 0 429 233 119 13 chr1 129238859 129239018 -152954646 + MER104 DNA MER2_type 5 180 0 311 294 44 29 chr1 129240537 129240673 -152952991 - L2 LINE L2 -8 3264 3127 2302 162 40 34 chr1 129241341 129241816 -152951848 - L1MB7 LINE L1 -87 6097 5620 413 332 137 2 chr1 129243275 129243691 -152949973 - L1ME4a LINE L1 -51 6070 5599 761 152 0 43 chr1 129243694 129243832 -152949832 - FLAM_C SINE Alu -10 133 2 238 319 0 0 chr1 129243834 129243906 -152949758 - L1ME4a LINE L1 -512 5609 5538 231 225 38 12 chr1 129245114 129245194 -152948470 + L2 LINE L2 3159 3240 -73 210 118 0 0 chr1 129245986 129246020 -152947644 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 187 340 94 0 chr1 129246039 129246145 -152947519 - MIR SINE MIR -31 231 116 577 107 50 8 chr1 129246267 129246388 -152947276 + CT-rich Low_complexity Low_complexity 1 126 0 1798 166 10 20 chr1 129246388 129246690 -152946974 - AluJb SINE Alu -13 299 1 200 342 45 9 chr1 129246772 129246883 -152946781 + L3 LINE CR1 679 793 -784 260 300 44 0 chr1 129247218 129247308 -152946356 + MIR SINE MIR 155 248 -14 305 335 18 44 chr1 129247308 129247535 -152946129 - L1ME LINE L1 -367 5754 5534 2031 130 51 3 chr1 129247561 129247853 -152945811 - AluSx SINE Alu -6 306 1 23 33 0 0 chr1 129247861 129247891 -152945773 + AT_rich Low_complexity Low_complexity 1 30 0 393 167 89 0 chr1 129248351 129248441 -152945223 + MLT1C LTR MaLR 370 467 0 982 291 37 49 chr1 129248454 129248963 -152944701 + L2 LINE L2 2811 3313 0 206 32 32 0 chr1 129248979 129249010 -152944654 + (TG)n Simple_repeat Simple_repeat 1 32 0 339 279 68 27 chr1 129249012 129249159 -152944505 - MIR SINE MIR -18 244 92 564 144 0 10 chr1 129250564 129250661 -152943003 - L1MD2 LINE L1 -370 5989 5894 * 5966 228 35 89 chr1 129250659 129252040 -152941624 - L1MD1 LINE L1 0 6636 5183 1115 183 16 32 chr1 129252040 129252291 -152941373 + L1MB8 LINE L1 5925 6171 -7 5966 228 35 89 chr1 129252291 129252567 -152941097 - L1MD1 LINE L1 -1453 5183 4894 1254 192 109 13 chr1 129252567 129252879 -152940785 - MER2 DNA MER2_type -2 342 1 5966 228 35 89 chr1 129252879 129255006 -152938658 - L1MD1 LINE L1 -1742 4894 3022 * 2105 139 10 0 chr1 129255014 129255323 -152938341 - AluSx SINE Alu 0 312 1 7043 196 140 52 chr1 129255323 129257394 -152936270 - L1MD1 LINE L1 -4157 2383 108 3979 98 16 14 chr1 129257394 129257964 -152935700 - L1PA14 LINE L1 0 6161 5591 7043 196 140 52 chr1 129257964 129258060 -152935604 - L1MD1 LINE L1 -6432 108 22 2764 216 20 7 chr1 129258050 129258662 -152935002 - L1ME1 LINE L1 -250 5916 5297 * 2218 114 16 3 chr1 129258665 129258973 -152934691 - AluSx SINE Alu 0 312 1 418 235 0 12 chr1 129258976 129259061 -152934603 - AluS SINE Alu -218 84 1 180 0 0 0 chr1 129259711 129259731 -152933933 + (TTA)n Simple_repeat Simple_repeat 2 21 0 231 146 42 0 chr1 129260568 129260616 -152933048 + (CCCCAG)n Simple_repeat Simple_repeat 4 53 0 213 278 98 68 chr1 129261766 129261899 -152931765 + MIR3 SINE MIR 10 146 -62 1490 114 18 4 chr1 129261998 129262359 -152931305 - L1P5 LINE L1 -699 5452 5089 207 330 11 22 chr1 129262375 129262466 -152931198 + MER5B DNA MER1_type 87 176 -2 845 170 69 6 chr1 129262659 129262818 -152930846 + Tigger3b DNA MER2_type 1 169 -1062 5903 126 31 51 chr1 129262982 129264071 -152929593 + Tigger3b DNA MER2_type 164 1230 -1 525 158 69 18 chr1 129264149 129264363 -152929301 + L1ME3A LINE L1 5887 6139 -31 349 280 0 122 chr1 129264367 129264556 -152929108 + L2 LINE L2 3016 3181 -91 282 307 84 48 chr1 129265284 129265450 -152928214 + MIR SINE MIR 14 140 -68 195 204 78 87 chr1 129265511 129265614 -152928050 - L3 LINE CR1 -1 1576 1475 529 235 60 74 chr1 129266339 129266556 -152927108 + MIR SINE MIR 46 259 -3 232 313 172 8 chr1 129267321 129267455 -152926209 - L2 LINE L2 0 3272 3117 357 330 26 26 chr1 129268351 129268466 -152925198 + MIR SINE MIR 17 131 -77 624 62 0 62 chr1 129268466 129268562 -152925102 + HY3 scRNA scRNA 11 100 -1 2082 98 7 7 chr1 129268580 129268877 -152924787 + AluSx SINE Alu 1 297 -15 733 210 123 20 chr1 129269115 129269310 -152924354 - MIR SINE MIR 0 262 48 185 163 47 0 chr1 129270316 129270359 -152923305 + GA-rich Low_complexity Low_complexity 4 48 0 359 300 172 6 chr1 129271492 129271672 -152921992 - MIR SINE MIR 0 262 53 180 152 0 0 chr1 129271814 129271847 -152921817 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1761 153 10 32 chr1 129272008 129272321 -152921343 + AluJo SINE Alu 1 306 -6 201 229 224 71 chr1 129272321 129272504 -152921160 + L3 LINE CR1 1119 1329 -248 747 139 0 33 chr1 129272504 129272626 -152921038 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chr1 129272626 129272658 -152921006 + AT_rich Low_complexity Low_complexity 1 32 0 404 246 109 51 chr1 129272791 129272929 -152920735 - MER69 DNA AcHobo -30 2496 2 1199 248 88 8 chr1 129272987 129273374 -152920290 - L1MC4a LINE L1 -1836 5972 5555 1286 61 0 0 chr1 129274572 129274737 -152918927 - L1PA5 LINE L1 0 6154 5990 2754 116 77 2 chr1 129275112 129275577 -152918087 + L1MB3 LINE L1 5683 6182 -1 1902 142 0 3 chr1 129275580 129275876 -152917788 - AluSx SINE Alu -17 295 1 37 0 0 0 chr1 129275878 129275915 -152917749 + AT_rich Low_complexity Low_complexity 1 37 0 322 168 24 131 chr1 129277457 129277591 -152916073 + L1MC4 LINE L1 1974 6989 -1333 1006 241 0 0 chr1 129277594 129277789 -152915875 - MIR SINE MIR -21 241 47 658 97 253 26 chr1 129279534 129279688 -152913976 - MER53 DNA DNA 0 189 1 204 257 158 20 chr1 129279799 129279900 -152913764 + MIR SINE MIR 117 231 -31 188 302 0 16 chr1 129279934 129279997 -152913667 + MIR SINE MIR 200 261 -1 442 296 107 43 chr1 129280023 129280082 -152913582 - MIR SINE MIR 0 262 208 1862 152 3 7 chr1 129280082 129280378 -152913286 - AluJb SINE Alu -16 296 2 442 296 107 43 chr1 129280378 129280551 -152913113 - MIR SINE MIR -54 208 15 21 0 0 0 chr1 129280821 129280842 -152912822 + AT_rich Low_complexity Low_complexity 1 21 0 473 202 30 0 chr1 129281512 129281611 -152912053 - L1MB4 LINE L1 0 6180 6079 263 266 0 18 chr1 129282824 129282933 -152910731 + (ATGGTG)n Simple_repeat Simple_repeat 4 110 0 334 270 315 11 chr1 129283389 129283567 -152910097 + MIR SINE MIR 20 251 -11 366 230 20 30 chr1 129284235 129284335 -152909329 - MER5A DNA MER1_type -34 155 57 466 274 47 71 chr1 129284845 129285057 -152908607 - MIR SINE MIR -55 207 1 324 0 0 0 chr1 129285582 129285618 -152908046 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr1 129285617 129285639 -152908025 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 * 398 292 35 0 chr1 129285649 129285762 -152907902 - L2 LINE L2 -20 3252 3136 515 243 7 50 chr1 129286166 129286306 -152907358 + L2 LINE L2 3139 3272 0 2335 162 8 22 chr1 129286627 129287029 -152906635 + MSTD LTR MaLR 1 396 0 291 151 179 28 chr1 129287169 129287275 -152906389 - MER96B DNA MER1_type? -239 178 57 587 303 98 8 chr1 129288906 129289140 -152904524 - MIR SINE MIR -6 256 2 195 42 0 0 chr1 129289195 129289219 -152904445 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 422 303 42 0 chr1 129289220 129289339 -152904325 - L2 LINE L2 -7 3265 3142 447 281 88 9 chr1 129289379 129289493 -152904171 + MER91A DNA MER1_type 20 142 -54 1769 145 73 0 chr1 129289583 129289872 -152903792 - AluSx SINE Alu -2 310 1 394 281 0 0 chr1 129290494 129290583 -152903081 - MIR SINE MIR -115 147 59 319 312 53 18 chr1 129290815 129290985 -152902679 - MIR3 SINE MIR -3 205 30 309 296 12 0 chr1 129292948 129293029 -152900635 - L2 LINE L2 -5 3267 3186 185 227 23 114 chr1 129293186 129293274 -152900390 - L2 LINE L2 -215 3057 2978 253 261 9 54 chr1 129294099 129294210 -152899454 + GA-rich Low_complexity Low_complexity 5 110 0 1640 85 0 0 chr1 129294923 129295134 -152898530 + AluSc SINE Alu 85 295 -14 379 130 84 12 chr1 129295529 129295601 -152898063 + L1MB3 LINE L1 5711 5783 -371 4233 165 26 4 chr1 129295601 129296299 -152897365 - MER44D DNA MER2_type 0 605 21 2188 152 7 30 chr1 129296299 129296727 -152896937 + L1MB3 LINE L1 5764 6181 -2 1151 207 44 72 chr1 129296733 129296858 -152896806 - L1MD1 LINE L1 -65 6177 6050 330 87 0 0 chr1 129296858 129296904 -152896760 + (TG)n Simple_repeat Simple_repeat 2 47 0 1151 207 44 72 chr1 129296904 129297046 -152896618 - L1MD1 LINE L1 -192 6050 5865 543 278 17 23 chr1 129297046 129297222 -152896442 - L1MB8 LINE L1 -256 5922 5748 754 132 0 0 chr1 129298786 129298892 -152894772 - FLAM_A SINE Alu -15 127 22 373 367 27 0 chr1 129299553 129299741 -152893923 - L2 LINE L2 -351 2963 2771 1434 168 24 31 chr1 129300371 129300663 -152893001 + AluJo SINE Alu 1 290 -22 477 181 48 19 chr1 129300837 129300942 -152892722 + MER81 DNA DNA 4 111 -3 250 219 156 0 chr1 129301636 129301700 -152891964 - MER63 DNA MER1_type 0 1062 989 408 148 0 0 chr1 129301704 129301765 -152891899 - MER63 DNA MER1_type -102 734 674 676 250 85 25 chr1 129301990 129302226 -152891438 + MIR SINE MIR 12 261 -1 704 272 106 13 chr1 129303019 129303254 -152890410 - MLT1J LTR MaLR -8 503 247 391 239 39 69 chr1 129303317 129303447 -152890217 - MLT1J LTR MaLR -383 128 3 537 350 124 15 chr1 129303623 129304301 -152889363 + L2 LINE L2 2510 3268 -4 349 228 94 24 chr1 129304685 129304812 -152888852 - MIR3 SINE MIR -64 144 9 466 335 12 12 chr1 129305706 129305867 -152887797 - MIR SINE MIR -50 212 52 232 286 0 0 chr1 129307206 129307262 -152886402 + L2 LINE L2 3241 3296 -17 354 241 150 8 chr1 129307388 129307521 -152886143 - MIR3 SINE MIR -22 186 35 238 188 0 0 chr1 129307645 129307693 -152885971 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr1 129308316 129308336 -152885328 + (TG)n Simple_repeat Simple_repeat 1 20 0 240 35 0 0 chr1 129308563 129308592 -152885072 + (T)n Simple_repeat Simple_repeat 1 29 0 344 287 16 33 chr1 129311695 129311817 -152881847 + MER5B DNA MER1_type 59 178 0 857 125 0 0 chr1 129312027 129312139 -152881525 + AluJb SINE Alu 13 124 -188 27 0 0 0 chr1 129312147 129312174 -152881490 + AT_rich Low_complexity Low_complexity 1 27 0 209 207 17 0 chr1 129312283 129312341 -152881323 - MIR3 SINE MIR 0 208 150 559 244 248 38 chr1 129312442 129313045 -152880619 + L2 LINE L2 2553 3295 -18 246 188 12 71 chr1 129313085 129313170 -152880494 + L1ME4a LINE L1 6039 6118 -3 440 179 48 0 chr1 129314215 129314299 -152879365 - MER58 DNA MER1_type -87 128 41 931 238 5 18 chr1 129314300 129314523 -152879141 + MER58A DNA MER1_type 4 223 -1 543 240 29 47 chr1 129314525 129314696 -152878968 - MIR SINE MIR -47 215 48 276 284 35 43 chr1 129315267 129315383 -152878281 - MARNA DNA Mariner -58 528 414 2394 103 3 0 chr1 129315410 129315722 -152877942 - AluSp SINE Alu 0 313 1 439 274 67 22 chr1 129315945 129316080 -152877584 + Charlie8 DNA MER1_type 136 276 -2141 238 277 160 0 chr1 129316207 129316301 -152877363 - MIR SINE MIR -36 226 118 233 258 32 97 chr1 129317245 129317369 -152876295 + L2 LINE L2 3162 3277 -36 224 265 0 0 chr1 129317444 129317512 -152876152 - MIR SINE MIR -148 114 47 346 242 152 18 chr1 129317848 129318013 -152875651 - MIR SINE MIR -6 256 70 258 306 28 0 chr1 129318701 129318773 -152874891 + MIR3 SINE MIR 113 186 -22 216 331 37 22 chr1 129319053 129319189 -152874475 + MIR SINE MIR 90 227 -35 246 242 218 16 chr1 129319343 129319467 -152874197 - MIR SINE MIR -73 189 41 535 254 86 25 chr1 129320172 129320369 -152873295 + MIR SINE MIR 37 245 -17 550 263 68 29 chr1 129320773 129320978 -152872686 + MIR SINE MIR 33 245 -17 716 139 9 0 chr1 129320979 129321087 -152872577 + FLAM_C SINE Alu 25 133 -10 180 0 0 0 chr1 129321100 129321120 -152872544 + (TG)n Simple_repeat Simple_repeat 2 21 0 2366 93 0 0 chr1 129321272 129321573 -152872091 - AluY SINE Alu -10 301 1 602 289 60 80 chr1 129321719 129321968 -152871696 + L1ME LINE L1 5295 5548 -573 2006 157 85 18 chr1 129321968 129322369 -152871295 - MSTC LTR MaLR 0 428 1 602 289 60 80 chr1 129322369 129322411 -152871253 + L1ME LINE L1 5548 5589 -532 2472 142 28 37 chr1 129322411 129322840 -152870824 + MSTA LTR MaLR 3 427 -1 602 289 60 80 chr1 129322840 129322861 -152870803 + L1ME LINE L1 5589 5609 -512 951 174 6 17 chr1 129322861 129323033 -152870631 + FAM SINE Alu 2 171 -4 602 289 60 80 chr1 129323033 129323254 -152870410 + L1ME LINE L1 5609 5819 -302 849 158 0 63 chr1 129323264 129323422 -152870242 + AluJo SINE Alu 1 148 -164 43 20 0 0 chr1 129323446 129323496 -152870168 + AT_rich Low_complexity Low_complexity 1 50 0 25 51 0 0 chr1 129323580 129323619 -152870045 + AT_rich Low_complexity Low_complexity 1 39 0 259 321 64 20 chr1 129324435 129324631 -152869033 + MIR SINE MIR 15 221 -41 228 284 71 56 chr1 129324765 129324909 -152868755 + MIR SINE MIR 42 189 -73 233 258 15 61 chr1 129325375 129325441 -152868223 - Charlie8 DNA MER1_type -2336 81 19 655 184 41 14 chr1 129325752 129325899 -152867765 + MER96B DNA MER1_type? 24 174 -243 22 0 0 0 chr1 129325929 129325951 -152867713 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 129326091 129326111 -152867553 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 693 133 14 84 chr1 129326230 129326373 -152867291 + FLAM_C SINE Alu 1 133 0 296 290 159 7 chr1 129327029 129327167 -152866497 + MIR3 SINE MIR 36 194 -14 457 195 187 0 chr1 129327364 129327487 -152866177 + MIR SINE MIR 1 146 -116 662 219 22 7 chr1 129327489 129327626 -152866038 + MLT1A2 LTR MaLR 195 333 -41 2050 291 138 21 chr1 129327646 129328102 -152865562 - L2 LINE L2 -1758 1556 1155 2103 86 58 58 chr1 129328102 129328252 -152865412 + AluSq SINE Alu 1 150 -163 2473 76 0 3 chr1 129328252 129328553 -152865111 + AluY SINE Alu 1 300 -11 2103 86 58 58 chr1 129328553 129328715 -152864949 + AluSq SINE Alu 149 313 0 2050 291 138 21 chr1 129328715 129329397 -152864267 - L2 LINE L2 -2159 1155 285 190 204 185 0 chr1 129329448 129329502 -152864162 - L2 LINE L2 -3153 161 98 1948 86 0 0 chr1 129329658 129329902 -152863762 - AluY SINE Alu -22 289 46 321 82 0 20 chr1 129331989 129332038 -152861626 - AluJ/FLAM SINE Alu -203 99 52 495 179 0 0 chr1 129332039 129332117 -152861547 - FLAM_A SINE Alu -54 78 1 27 0 0 0 chr1 129332174 129332201 -152861463 + AT_rich Low_complexity Low_complexity 1 27 0 181 233 50 17 chr1 129332872 129332932 -152860732 + L2 LINE L2 3206 3267 -5 538 264 40 84 chr1 129333905 129334155 -152859509 - MIR SINE MIR -1 261 23 186 359 63 14 chr1 129334217 129334359 -152859305 + L2 LINE L2 2561 2709 -605 423 343 31 12 chr1 129334767 129335021 -152858643 + MIR SINE MIR 3 261 -1 1328 145 81 10 chr1 129335490 129335787 -152857877 - MER33 DNA MER1_type 0 324 7 1907 134 52 3 chr1 129336047 129336337 -152857327 - AluJb SINE Alu -8 304 1 1040 181 14 29 chr1 129336855 129337065 -152856599 + MER3 DNA MER1_type 3 209 0 2999 217 35 5 chr1 129337959 129338586 -152855078 - MER82 DNA MER2_type -6 647 2 279 214 45 34 chr1 129338686 129338775 -152854889 + L1MC/D LINE L1 5523 5612 -509 309 194 0 65 chr1 129338837 129338930 -152854734 + MIR SINE MIR 91 177 -85 320 242 67 117 chr1 129338991 129339217 -152854447 + L1MC/D LINE L1 5606 5817 -375 189 107 0 0 chr1 129339292 129339320 -152854344 + (GGAAA)n Simple_repeat Simple_repeat 1 28 0 1922 202 35 91 chr1 129339509 129340158 -152853506 - L1MC5 LINE L1 -657 7304 6692 421 287 28 0 chr1 129340159 129340267 -152853397 + MER81 DNA DNA 2 112 -2 243 217 17 33 chr1 129340299 129340359 -152853305 - L1MC4 LINE L1 -1285 6757 6699 335 228 13 0 chr1 129340402 129340481 -152853183 + MER116 DNA Mariner 1 80 0 5389 131 52 2 chr1 129340845 129341700 -152851964 - L1MC1 LINE L1 -28 6305 5409 1143 62 0 88 chr1 129341715 129341875 -152851789 - AluSq/x SINE Alu -167 146 1 8054 229 17 3 chr1 129341878 129343773 -152849891 - L1MC1 LINE L1 -750 5396 3474 1233 202 0 0 chr1 129343773 129343986 -152849678 - AluJo SINE Alu -98 214 2 236 337 0 23 chr1 129345011 129345097 -152848567 - MIR3 SINE MIR -112 96 13 570 283 86 17 chr1 129345435 129345668 -152847996 + MIR SINE MIR 8 256 -6 258 296 78 41 chr1 129346038 129346131 -152847533 + MIR SINE MIR 30 119 -143 2464 81 0 0 chr1 129346131 129346429 -152847235 - AluY SINE Alu -13 298 1 258 296 78 41 chr1 129346429 129346506 -152847158 + MIR SINE MIR 119 192 -70 23 54 0 0 chr1 129346977 129347014 -152846650 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr1 129348533 129348558 -152845106 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 227 275 0 0 chr1 129348911 129348980 -152844684 + CT-rich Low_complexity Low_complexity 1 69 0 735 240 54 45 chr1 129351200 129351442 -152842222 + MIR SINE MIR 13 256 -6 2939 7 0 0 chr1 129351484 129351794 -152841870 + AluY SINE Alu 1 310 -1 1944 117 84 36 chr1 129352353 129352711 -152840953 + THE1C LTR MaLR 1 375 0 535 223 58 43 chr1 129352711 129352899 -152840765 + MER46C DNA MER2_type 3 193 -145 1324 193 67 0 chr1 129352899 129353138 -152840526 + AluJo SINE Alu 1 255 -57 271 291 43 43 chr1 129353219 129353360 -152840304 + MER46C DNA MER2_type 187 327 -11 336 298 120 0 chr1 129353687 129353895 -152839769 + L1ME4a LINE L1 5612 5844 -277 384 180 0 45 chr1 129354448 129354548 -152839116 - MER5A DNA MER1_type -6 183 77 749 263 23 50 chr1 129354846 129355108 -152838556 + MIR SINE MIR 4 258 -4 276 30 0 0 chr1 129355434 129355467 -152838197 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr1 129356715 129356741 -152836923 + AT_rich Low_complexity Low_complexity 1 26 0 1888 154 3 0 chr1 129356749 129357034 -152836630 - AluJo SINE Alu -26 286 1 22 0 0 0 chr1 129357037 129357059 -152836605 + AT_rich Low_complexity Low_complexity 1 22 0 513 236 50 14 chr1 129357293 129357433 -152836231 - L2 LINE L2 -482 2832 2688 4285 272 135 14 chr1 129357433 129357922 -152835742 - L2 LINE L2 -788 2526 2097 2202 126 3 0 chr1 129357922 129358224 -152835440 + AluSq SINE Alu 1 303 -10 4285 272 135 14 chr1 129358224 129359483 -152834181 - L2 LINE L2 -1217 2097 567 2037 133 3 3 chr1 129359566 129359860 -152833804 + AluSx SINE Alu 1 294 -18 402 297 129 64 chr1 129361001 129361567 -152832097 - L2 LINE L2 -359 2955 2353 1485 184 27 7 chr1 129361820 129362113 -152831551 + AluJb SINE Alu 1 299 -13 1298 113 104 9 chr1 129362717 129362938 -152830726 + Tigger2a DNA MER2_type 1 242 -192 5531 108 51 33 chr1 129362942 129363241 -152830423 - L1PB1 LINE L1 -5 6146 5854 2355 73 3 13 chr1 129363241 129363554 -152830110 - AluY SINE Alu -1 310 1 5531 108 51 33 chr1 129363554 129364439 -152829225 - L1PB1 LINE L1 -297 5854 4939 1299 136 86 0 chr1 129364439 129364659 -152829005 + Tigger2a DNA MER2_type 205 443 -1 211 351 14 14 chr1 129364667 129364741 -152828923 - MIR3 SINE MIR -24 184 111 381 321 64 14 chr1 129364756 129364974 -152828690 - MIR SINE MIR -14 248 20 388 330 139 0 chr1 129365014 129365187 -152828477 - L2 LINE L2 0 3313 3117 14869 117 26 27 chr1 129365750 129367653 -152826011 - Tigger1 DNA MER2_type 0 2418 515 2219 118 0 0 chr1 129367653 129367966 -152825698 - AluSq SINE Alu 0 313 1 14869 117 26 27 chr1 129367966 129368481 -152825183 - Tigger1 DNA MER2_type -1903 515 1 689 313 74 32 chr1 129368513 129369135 -152824529 - L1MD1 LINE L1 -404 5838 5259 681 311 150 36 chr1 129369249 129369863 -152823801 - L2 LINE L2 -624 2690 2007 323 337 142 24 chr1 129370083 129370329 -152823335 + L1MC4a LINE L1 5661 5935 -1873 801 169 0 8 chr1 129370330 129370460 -152823204 + FLAM_C SINE Alu 1 129 -14 25 65 0 0 chr1 129370687 129370733 -152822931 + AT_rich Low_complexity Low_complexity 1 46 0 264 59 0 0 chr1 129370947 129370981 -152822683 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 214 327 100 0 chr1 129371163 129371273 -152822391 + MIR SINE MIR 124 244 -18 754 249 93 38 chr1 129371829 129371902 -152821762 - MIR SINE MIR -2 260 192 2337 78 7 0 chr1 129371902 129372208 -152821456 + AluSx SINE Alu 3 310 -2 754 249 93 38 chr1 129372208 129372371 -152821293 - MIR SINE MIR -70 192 11 216 196 0 78 chr1 129372548 129372599 -152821065 - MIR3 SINE MIR -9 199 153 589 226 83 59 chr1 129372740 129372944 -152820720 - Charlie8 DNA MER1_type -2136 281 73 316 184 194 51 chr1 129372974 129373072 -152820592 + L2 LINE L2 3201 3312 -1 233 170 38 0 chr1 129373569 129373622 -152820042 + CT-rich Low_complexity Low_complexity 1 55 0 1920 160 0 0 chr1 129373622 129373916 -152819748 - AluJb SINE Alu -18 294 1 234 91 0 0 chr1 129374096 129374129 -152819535 + (A)n Simple_repeat Simple_repeat 1 33 0 479 206 19 9 chr1 129374725 129374832 -152818832 - MIR SINE MIR -7 255 148 934 284 62 38 chr1 129374833 129375174 -152818490 - L2 LINE L2 0 3313 2965 365 237 88 9 chr1 129375276 129375390 -152818274 - MIR SINE MIR -125 137 15 1098 208 0 24 chr1 129375798 129375970 -152817694 + MER33 DNA MER1_type 1 167 -2418 524 74 0 25 chr1 129375970 129376051 -152817613 - MADE1 DNA Mariner -1 79 1 1098 208 0 24 chr1 129376051 129376133 -152817531 + MER33 DNA MER1_type 167 249 -75 181 308 159 9 chr1 129376542 129376649 -152817015 + L3 LINE CR1 196 318 -1259 232 234 120 49 chr1 129377168 129377352 -152816312 + L1MC5 LINE L1 7486 7682 -279 21 36 0 0 chr1 129377401 129377429 -152816235 + AT_rich Low_complexity Low_complexity 1 28 0 450 332 123 8 chr1 129377646 129377881 -152815783 + MIR SINE MIR 1 262 0 1362 151 86 48 chr1 129378272 129378450 -152815214 - AluJb SINE Alu -10 302 132 2417 123 25 6 chr1 129378450 129378807 -152814857 - THE1B LTR MaLR 0 364 1 10698 98 32 34 chr1 129378807 129380390 -152813274 - THE1B-int LTR MaLR 0 1580 1 2195 148 28 11 chr1 129380390 129380748 -152812916 - THE1B LTR MaLR 0 364 1 1362 151 86 48 chr1 129380748 129380858 -152812806 - AluJb SINE Alu -179 133 1 743 273 189 25 chr1 129380918 129381427 -152812237 + L2 LINE L2 2485 3067 -246 613 267 21 16 chr1 129381439 129381630 -152812034 + L1MC4 LINE L1 5757 5948 -1860 2038 124 13 0 chr1 129381652 129381959 -152811705 - AluY SINE Alu 0 311 1 260 186 17 17 chr1 129382017 129382076 -152811588 - Tigger5 DNA MER2_type -14 2309 2251 * 311 154 0 19 chr1 129382046 129382098 -152811566 - Tigger5 DNA MER2_type -2269 54 4 2018 225 140 140 chr1 129382102 129382809 -152810855 + L1MC4 LINE L1 6347 7053 -989 1717 173 3 7 chr1 129382809 129383098 -152810566 + AluJb SINE Alu 11 298 -14 2018 225 140 140 chr1 129383098 129383296 -152810368 + L1MC4 LINE L1 7053 7250 -792 1787 167 0 7 chr1 129383296 129383596 -152810068 + AluJb SINE Alu 1 298 -14 2018 225 140 140 chr1 129383596 129384385 -152809279 + L1MC4 LINE L1 7249 8042 0 550 267 76 58 chr1 129384410 129384635 -152809029 + L2 LINE L2 3083 3311 -2 441 264 26 124 chr1 129384632 129384825 -152808839 - MIR SINE MIR -76 186 13 * 1831 155 3 0 chr1 129385541 129385844 -152807820 - AluJb SINE Alu -8 304 1 187 269 97 21 chr1 129386131 129386224 -152807440 + MIR SINE MIR 135 234 -28 22 35 0 0 chr1 129386557 129386586 -152807078 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 129386803 129386826 -152806838 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 129387025 129387046 -152806618 + GC_rich Low_complexity Low_complexity 1 21 0 196 219 0 0 chr1 129388387 129388428 -152805236 - L2 LINE L2 -557 2757 2717 * 363 279 295 0 chr1 129388424 129388614 -152805050 - MIR SINE MIR -1 261 16 385 231 127 15 chr1 129390061 129390195 -152803469 + MER91B DNA MER1_type 27 175 -15 186 333 152 7 chr1 129394065 129394203 -152799461 + MIR3 SINE MIR 10 167 -41 340 136 17 0 chr1 129394416 129394475 -152799189 + MER116 DNA Mariner 14 73 -7 303 93 0 0 chr1 129395606 129395649 -152798015 + (TCC)n Simple_repeat Simple_repeat 3 45 0 387 281 179 34 chr1 129395876 129396139 -152797525 + L1MC4a LINE L1 5728 6028 -1780 1319 247 98 26 chr1 129396186 129396324 -152797340 + MLT1C LTR MaLR 8 135 -332 1478 207 47 34 chr1 129396324 129396705 -152796959 + MLT1B LTR MaLR 1 386 -4 1319 247 98 26 chr1 129396705 129396995 -152796669 + MLT1C LTR MaLR 135 467 0 225 0 0 0 chr1 129397269 129397294 -152796370 + (T)n Simple_repeat Simple_repeat 1 25 0 493 288 85 27 chr1 129398560 129398855 -152794809 + L1ME4a LINE L1 5781 6092 -29 2037 99 0 36 chr1 129399853 129400155 -152793509 + AluSg SINE Alu 1 291 -19 21 36 0 0 chr1 129400492 129400520 -152793144 + AT_rich Low_complexity Low_complexity 1 28 0 1720 97 122 14 chr1 129401588 129401867 -152791797 + AluSg SINE Alu 2 310 0 26 30 0 0 chr1 129402181 129402214 -152791450 + AT_rich Low_complexity Low_complexity 1 33 0 221 278 0 28 chr1 129402395 129402467 -152791197 + GA-rich Low_complexity Low_complexity 4 73 0 196 356 0 22 chr1 129402955 129403045 -152790619 + L3 LINE CR1 998 1085 -492 241 207 49 73 chr1 129403072 129403154 -152790510 - L2 LINE L2 -63 3250 3171 308 327 238 5 chr1 129403249 129403451 -152790213 - L2 LINE L2 -138 3175 2927 417 287 242 24 chr1 129403469 129403758 -152789906 - L2 LINE L2 0 3272 2921 590 252 246 31 chr1 129403793 129404114 -152789550 + L3 LINE CR1 1099 1488 -89 319 284 159 40 chr1 129405243 129405564 -152788100 + L2 LINE L2 2604 2962 -352 295 328 33 0 chr1 129405737 129405859 -152787805 - L2 LINE L2 -1 3312 3187 275 308 13 13 chr1 129405864 129405942 -152787722 + L2 LINE L2 3194 3271 -1 181 238 24 0 chr1 129407284 129407326 -152786338 + L3b LINE CR1 1186 1228 -355 382 326 30 15 chr1 129407804 129407939 -152785725 + MIR SINE MIR 123 259 -3 626 196 223 0 chr1 129408029 129408177 -152785487 + MER5A DNA MER1_type 9 189 0 521 250 179 0 chr1 129409074 129409230 -152784434 + MER5A DNA MER1_type 3 186 -3 694 243 138 22 chr1 129409849 129410371 -152783293 + MER20B DNA MER1_type 148 764 -19 202 228 88 18 chr1 129410411 129410468 -152783196 - L2 LINE L2 -2 3270 3210 * 786 180 219 6 chr1 129410440 129410623 -152783041 - MIR SINE MIR -29 233 12 668 236 127 38 chr1 129412644 129412881 -152780783 + MIR SINE MIR 5 262 0 657 299 43 10 chr1 129413035 129413242 -152780422 + MIR SINE MIR 30 243 -19 560 266 22 76 chr1 129413718 129413948 -152779716 + MIR SINE MIR 34 252 -10 326 232 7 76 chr1 129414969 129415092 -152778572 + MIR SINE MIR 1 118 -90 240 250 45 34 chr1 129415164 129415252 -152778412 + MIR SINE MIR 104 192 -70 723 288 162 23 chr1 129415270 129415322 -152778342 + L1MC4 LINE L1 7524 7567 -475 366 91 0 0 chr1 129415322 129415377 -152778287 + (CA)n Simple_repeat Simple_repeat 2 56 0 723 288 162 23 chr1 129415377 129415751 -152777913 + L1MC4 LINE L1 7567 8009 -33 693 315 13 25 chr1 129417026 129417264 -152776400 - MIR SINE MIR 0 262 28 616 227 238 0 chr1 129417289 129417474 -152776190 + MIR SINE MIR 3 231 -31 28 61 0 0 chr1 129417483 129417532 -152776132 + AT_rich Low_complexity Low_complexity 1 49 0 328 293 103 23 chr1 129418914 129419088 -152774576 + MIR SINE MIR 63 250 -12 313 312 65 40 chr1 129420739 129420938 -152772726 + MIR SINE MIR 58 261 -1 441 252 8 31 chr1 129421509 129421636 -152772028 + MIR SINE MIR 72 195 -67 216 313 0 0 chr1 129422738 129422786 -152770878 - L2 LINE L2 -16 3256 3209 27 29 0 0 chr1 129422964 129422998 -152770666 + AT_rich Low_complexity Low_complexity 1 34 0 841 148 112 12 chr1 129425181 129425350 -152768314 - AluJb SINE Alu 0 312 127 184 378 0 0 chr1 129427530 129427612 -152766052 + L2 LINE L2 2873 2954 -318 265 315 18 36 chr1 129428373 129428484 -152765180 + MER5A DNA MER1_type 34 142 -47 238 326 33 22 chr1 129429085 129429177 -152764487 + MIR SINE MIR 120 212 -50 21 36 0 0 chr1 129429204 129429232 -152764432 + AT_rich Low_complexity Low_complexity 1 28 0 340 325 26 0 chr1 129429407 129429521 -152764143 - Charlie8 DNA MER1_type -2295 122 6 2160 93 3 0 chr1 129430941 129431220 -152762444 + AluSp SINE Alu 1 283 -30 273 57 0 0 chr1 129431220 129431255 -152762409 + (CA)n Simple_repeat Simple_repeat 1 35 0 2160 93 3 0 chr1 129431255 129431266 -152762398 + AluSp SINE Alu 283 292 -21 21 0 0 0 chr1 129432551 129432572 -152761092 + AT_rich Low_complexity Low_complexity 1 21 0 311 307 0 59 chr1 129433387 129433488 -152760176 + MIR SINE MIR 50 144 -64 * 939 243 62 21 chr1 129433478 129433721 -152759943 + MIR SINE MIR 5 257 -5 384 234 39 0 chr1 129434339 129434416 -152759248 + Tigger3(Golem) DNA MER2_type 1 80 -2949 650 200 0 0 chr1 129434543 129434653 -152759011 + Tigger3(Golem) DNA MER2_type 2929 3038 0 496 208 134 54 chr1 129434862 129435011 -152758653 - MER5B DNA MER1_type -3 175 15 353 289 39 0 chr1 129435862 129435966 -152757698 + L1ME4a LINE L1 6013 6120 -1 1097 230 98 105 chr1 129436034 129436452 -152757212 + MER21B LTR ERV1 15 429 -434 670 159 99 45 chr1 129436450 129436688 -152756976 + MLT1F1 LTR MaLR 78 378 -164 * 1722 157 0 20 chr1 129436693 129436882 -152756782 - AluJo SINE Alu -16 296 114 2657 137 34 5 chr1 129436882 129437298 -152756366 + MSTA LTR MaLR 1 428 0 1722 157 0 20 chr1 129437298 129437401 -152756263 - AluJo SINE Alu -198 114 10 792 202 12 18 chr1 129437415 129437583 -152756081 + MLT1F1 LTR MaLR 398 564 -3 235 268 14 14 chr1 129437642 129437713 -152755951 + Charlie4 DNA MER1_type 1885 1955 -6 349 268 158 40 chr1 129438367 129438595 -152755069 + L1ME4a LINE L1 5867 6121 0 405 277 66 0 chr1 129438618 129438755 -152754909 - MIR SINE MIR -36 226 81 505 259 38 32 chr1 129439167 129439325 -152754339 - MIR SINE MIR -4 258 100 1691 103 58 0 chr1 129439352 129439594 -152754070 + AluSx SINE Alu 1 256 -56 2082 120 0 3 chr1 129439752 129440053 -152753611 + AluSx SINE Alu 1 300 -12 775 120 0 0 chr1 129440060 129440168 -152753496 + AluJb SINE Alu 191 298 -14 790 142 129 0 chr1 129440291 129440446 -152753218 + MIR SINE MIR 78 252 -10 1079 210 179 83 chr1 129440519 129441061 -152752603 + MLT1G LTR MaLR 2 590 0 260 229 139 41 chr1 129441524 129441646 -152752018 - L2 LINE L2 -596 2718 2585 21 36 0 0 chr1 129442064 129442092 -152751572 + AT_rich Low_complexity Low_complexity 1 28 0 296 226 96 35 chr1 129442355 129442470 -152751194 - L1MC/D LINE L1 -352 5822 5708 313 353 83 47 chr1 129445081 129445359 -152748305 + L1ME4a LINE L1 5774 6061 -60 329 157 60 60 chr1 129446386 129446469 -152747195 - MIR SINE MIR -74 188 106 264 304 194 38 chr1 129446526 129446789 -152746875 - L2 LINE L2 -1 3271 2968 2471 49 3 0 chr1 129446985 129447289 -152746375 + AluY SINE Alu 1 305 -6 23 0 0 0 chr1 129449358 129449381 -152744283 + AT_rich Low_complexity Low_complexity 1 23 0 219 283 0 19 chr1 129449393 129449446 -152744218 + MIR3 SINE MIR 155 206 -2 682 164 0 0 chr1 129449543 129449659 -152744005 + LTR9B LTR ERV1 445 560 -84 869 245 98 91 chr1 129450567 129451097 -152742567 + MLT1G LTR MaLR 1 555 0 275 360 0 0 chr1 129451731 129451831 -152741833 + L2 LINE L2 2950 3049 -223 208 219 0 0 chr1 129451924 129451965 -152741699 + L2 LINE L2 3272 3312 -1 344 197 26 13 chr1 129452437 129452513 -152741151 + L2 LINE L2 3236 3312 -1 248 241 105 62 chr1 129452538 129452700 -152740964 - MIR3 SINE MIR -38 170 2 212 233 0 0 chr1 129453189 129453232 -152740432 - L3 LINE CR1 -187 1390 1348 233 350 33 33 chr1 129453264 129453384 -152740280 - L2 LINE L2 -2 3311 3192 391 315 207 31 chr1 129453415 129453869 -152739795 - L3 LINE CR1 -448 1129 596 225 204 0 37 chr1 129454625 129454679 -152738985 + GA-rich Low_complexity Low_complexity 1 52 0 462 257 59 0 chr1 129454716 129454852 -152738812 - MIR SINE MIR -34 228 85 1774 119 11 22 chr1 129455735 129456013 -152737651 + AluSq SINE Alu 37 311 -2 363 279 96 48 chr1 129456450 129456701 -152736963 - L1ME3 LINE L1 -215 5947 5685 280 343 7 20 chr1 129456739 129456885 -152736779 - L1ME3 LINE L1 -586 5580 5437 556 217 40 13 chr1 129456990 129457142 -152736522 + L1MC5 LINE L1 7758 7913 -48 2054 124 7 0 chr1 129457167 129457521 -152736143 + AluSx SINE Alu 5 360 0 789 141 0 177 chr1 129457794 129457900 -152735764 - FRAM SINE Alu -136 166 109 189 0 0 0 chr1 129457900 129457921 -152735743 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 789 141 0 177 chr1 129457921 129458012 -152735652 - FRAM SINE Alu -193 109 4 309 248 168 32 chr1 129459119 129459244 -152734420 - MIR3 SINE MIR -64 144 3 319 373 44 0 chr1 129459699 129459857 -152733807 - MIR SINE MIR -78 184 20 2781 207 55 16 chr1 129460855 129461473 -152732191 + L1ME1 LINE L1 5525 6166 0 196 365 54 14 chr1 129461527 129461675 -152731989 + MIR SINE MIR 80 233 -29 580 195 124 24 chr1 129463425 129463594 -152730070 - MIR SINE MIR 0 262 77 2374 97 0 0 chr1 129463769 129464067 -152729597 + AluSx SINE Alu 1 298 -14 292 225 14 14 chr1 129465210 129465281 -152728383 - MLT1J2 LTR MaLR -309 141 71 385 193 60 0 chr1 129466348 129466431 -152727233 - MLT1L LTR MaLR -338 277 190 281 328 8 82 chr1 129467542 129467576 -152726088 - L2 LINE L2 0 3272 3237 339 227 67 0 chr1 129467576 129467651 -152726013 + MER116 DNA Mariner 1 80 0 281 328 8 82 chr1 129467651 129467750 -152725914 - L2 LINE L2 -35 3237 3149 208 355 167 7 chr1 129467801 129467939 -152725725 + L2 LINE L2 3150 3309 -4 187 132 211 0 chr1 129471139 129471177 -152722487 + L2 LINE L2 3222 3267 -5 227 304 43 0 chr1 129472057 129472172 -152721492 + L1ME4a LINE L1 5881 6000 -121 2206 67 46 3 chr1 129472238 129472520 -152721144 - AluY SINE Alu -1 310 17 2236 86 3 14 chr1 129472589 129472879 -152720785 + AluSx SINE Alu 1 287 -25 290 295 32 21 chr1 129473070 129473165 -152720499 + L3b LINE CR1 1420 1515 -68 2107 109 42 0 chr1 129473971 129474286 -152719378 - AluSq SINE Alu 0 313 1 1669 149 6 93 chr1 129475545 129475866 -152717798 - AluJo SINE Alu -19 293 1 757 162 8 0 chr1 129476295 129476412 -152717252 - FLAM_C SINE Alu -15 118 1 576 133 0 62 chr1 129476412 129476429 -152717235 + Charlie4 DNA MER1_type 1855 1871 -90 1711 108 166 0 chr1 129476429 129476688 -152716976 - AluSx SINE Alu 0 302 1 576 133 0 62 chr1 129476688 129476783 -152716881 + Charlie4 DNA MER1_type 1871 1960 -1 293 226 0 75 chr1 129476932 129476957 -152716707 - L2 LINE L2 -3 3269 3244 2237 114 0 7 chr1 129476957 129477255 -152716409 + AluSg SINE Alu 1 296 -14 293 226 0 75 chr1 129477255 129477322 -152716342 - L2 LINE L2 -28 3244 3184 267 130 65 0 chr1 129477356 129477402 -152716262 + MIR SINE MIR 200 248 -14 354 250 0 33 chr1 129477551 129477643 -152716021 + MIR SINE MIR 1 89 -173 1179 247 92 35 chr1 129477643 129477991 -152715673 + MLT1J LTR MaLR 1 368 -143 2347 95 3 0 chr1 129478023 129478317 -152715347 - AluSx SINE Alu -17 295 1 489 239 0 18 chr1 129478317 129478418 -152715246 + MIR SINE MIR 91 191 -71 209 241 161 23 chr1 129478560 129478647 -152715017 - L3 LINE CR1 -12 1565 1467 631 232 40 34 chr1 129480780 129480957 -152712707 - MER5B DNA MER1_type 0 178 1 228 322 0 2 chr1 129481090 129481151 -152712513 - MIR SINE MIR -135 73 14 194 241 46 65 chr1 129482962 129483070 -152710594 + MIR SINE MIR 24 129 -79 290 189 0 74 chr1 129483462 129483584 -152710080 + C-rich Low_complexity Low_complexity 3 115 0 28 0 0 0 chr1 129483774 129483802 -152709862 + GC_rich Low_complexity Low_complexity 1 28 0 959 227 61 4 chr1 129484104 129484333 -152709331 + MIR SINE MIR 21 262 0 236 273 89 111 chr1 129484405 129484900 -152708764 - L2 LINE L2 -60 3212 2726 2051 152 0 0 chr1 129484920 129485223 -152708441 - AluSg SINE Alu -7 303 1 934 271 169 31 chr1 129485306 129485457 -152708207 - L2 LINE L2 0 3313 3184 2036 138 7 0 chr1 129485457 129485781 -152707883 + AluSx SINE Alu 1 312 0 934 271 169 31 chr1 129485781 129486324 -152707340 - L2 LINE L2 -129 3184 2461 2047 123 0 61 chr1 129486783 129487109 -152706555 + AluSp SINE Alu 1 306 -7 733 130 8 8 chr1 129487109 129487240 -152706424 + (GGAA)n Simple_repeat Simple_repeat 1 131 0 211 40 0 0 chr1 129487240 129487265 -152706399 + (GA)n Simple_repeat Simple_repeat 1 25 0 300 241 23 11 chr1 129487555 129487642 -152706022 - Charlie8 DNA MER1_type -2200 217 130 192 77 0 0 chr1 129487757 129487783 -152705881 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2470 79 0 13 chr1 129488245 129488549 -152705115 - AluSx SINE Alu -12 300 1 189 0 0 0 chr1 129488571 129488592 -152705072 + (GA)n Simple_repeat Simple_repeat 2 22 0 767 270 33 29 chr1 129488833 129489074 -152704590 + MIR SINE MIR 11 252 -10 275 192 211 0 chr1 129489105 129489207 -152704457 + MIR SINE MIR 19 150 -62 2437 92 0 3 chr1 129489207 129489510 -152704154 + AluSq SINE Alu 1 302 -11 181 290 65 0 chr1 129489535 129489597 -152704067 + MER5B DNA MER1_type 8 73 -105 232 179 0 36 chr1 129490374 129490430 -152703234 + 7SK RNA RNA 19 72 -121 306 221 103 0 chr1 129490754 129490822 -152702842 - L2 LINE L2 -46 3267 3193 * 677 238 0 12 chr1 129490814 129490974 -152702690 + L2 LINE L2 3152 3309 -4 382 227 17 34 chr1 129490973 129491092 -152702572 - L2 LINE L2 -113 3200 3084 * 1039 173 17 0 chr1 129491092 129491265 -152702399 - FRAM SINE Alu -7 169 1 355 280 75 0 chr1 129491265 129491372 -152702292 - L2 LINE L2 -232 3081 2967 2370 95 0 7 chr1 129491385 129491690 -152701974 - AluSg SINE Alu -7 303 1 310 375 35 28 chr1 129492028 129492172 -152701492 + L1MEd LINE L1 479 623 -5496 1322 266 116 24 chr1 129492307 129492840 -152700824 - L2 LINE L2 -257 3056 2475 774 330 88 73 chr1 129492851 129493892 -152699772 + L2 LINE L2 2158 3245 -27 1821 148 3 50 chr1 129493892 129494209 -152699455 - AluJo SINE Alu -10 302 1 774 330 88 73 chr1 129494209 129494237 -152699427 + L2 LINE L2 3245 3271 -1 317 299 128 49 chr1 129494719 129495007 -152698657 + HAL1 LINE L1 988 1298 -1209 320 303 0 11 chr1 129495779 129495868 -152697796 + CT-rich Low_complexity Low_complexity 1 88 0 1254 193 115 0 chr1 129496032 129496276 -152697388 + AluJo SINE Alu 1 272 -40 240 229 62 0 chr1 129496276 129496324 -152697340 + MIR SINE MIR 118 168 -94 186 315 18 45 chr1 129496327 129496438 -152697226 + MIR SINE MIR 142 249 -13 * 3083 227 52 166 chr1 129496436 129497613 -152696051 - L2 LINE L2 -23 3290 2424 265 220 0 0 chr1 129497613 129497672 -152695992 + MLT1L LTR MaLR 398 456 -93 3083 227 52 166 chr1 129497672 129498679 -152694985 - L2 LINE L2 -889 2424 1304 647 275 141 16 chr1 129498810 129499263 -152694401 + MLT1L LTR MaLR 3 537 -78 2416 57 40 3 chr1 129499268 129499568 -152694096 + AluY SINE Alu 1 311 0 22 56 0 0 chr1 129499568 129499604 -152694060 + AT_rich Low_complexity Low_complexity 1 36 0 2321 125 0 0 chr1 129500009 129500320 -152693344 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr1 129500535 129500555 -152693109 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1783 153 10 33 chr1 129500947 129501254 -152692410 - AluJo SINE Alu -10 302 3 2222 104 0 0 chr1 129501420 129501700 -152691964 + AluSg SINE Alu 1 280 -30 454 292 127 30 chr1 129501991 129502227 -152691437 - L2 LINE L2 0 3272 3014 764 148 0 25 chr1 129502227 129502349 -152691315 - FRAM SINE Alu -20 156 38 545 159 204 25 chr1 129502908 129503065 -152690599 + ORSL DNA AcHobo 55 239 -36 330 26 0 0 chr1 129503561 129503600 -152690064 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 265 0 0 chr1 129503748 129503797 -152689867 + GA-rich Low_complexity Low_complexity 2 50 0 193 154 26 0 chr1 129503811 129503850 -152689814 + L2 LINE L2 3231 3270 -2 2184 120 0 10 chr1 129503934 129504233 -152689431 + AluSx SINE Alu 1 296 -16 2359 104 0 0 chr1 129504233 129504540 -152689124 + AluSx SINE Alu 1 307 -5 585 260 107 96 chr1 129504570 129504784 -152688880 - L1MC4a LINE L1 -270 7772 7562 1684 143 109 0 chr1 129504784 129505049 -152688615 - AluJo SINE Alu -14 298 5 585 260 107 96 chr1 129505049 129505303 -152688361 - L1MC4a LINE L1 -480 7562 7219 387 222 11 0 chr1 129505857 129505947 -152687717 + MLT1L LTR MaLR 524 614 -1 345 320 16 8 chr1 129505950 129506072 -152687592 - MIR SINE MIR -56 152 30 351 96 0 0 chr1 129506879 129506931 -152686733 + (TG)n Simple_repeat Simple_repeat 2 53 0 710 273 56 23 chr1 129507868 129508084 -152685580 + MIR SINE MIR 14 236 -26 430 300 51 94 chr1 129508091 129508464 -152685200 + L2 LINE L2 2916 3272 0 877 259 98 39 chr1 129508597 129509038 -152684626 - MLT1L LTR MaLR -7 608 142 396 234 106 0 chr1 129509158 129509252 -152684412 - L2 LINE L2 0 3313 3210 487 291 131 0 chr1 129509597 129509841 -152683823 - L2 LINE L2 -120 3193 2918 712 229 77 22 chr1 129511390 129511573 -152682091 - MIR3 SINE MIR -13 195 3 2266 107 7 0 chr1 129511790 129512088 -152681576 - AluSp SINE Alu -13 300 1 2469 72 0 20 chr1 129512249 129512554 -152681110 + AluY SINE Alu 1 299 -12 441 66 0 0 chr1 129513308 129513369 -152680295 + (TG)n Simple_repeat Simple_repeat 2 62 0 324 214 117 121 chr1 129513992 129514198 -152679466 - MLT1K LTR MaLR 0 588 384 252 301 0 62 chr1 129514273 129514386 -152679278 - MLT1K LTR MaLR -295 293 188 305 277 187 32 chr1 129514905 129515060 -152678604 - MER5A DNA MER1_type -2 187 9 715 197 33 0 chr1 129515689 129515811 -152677853 - MER58B DNA MER1_type 0 341 216 4401 234 34 39 chr1 129515812 129516351 -152677313 - L1MEc LINE L1 -1381 4834 4294 781 173 0 43 chr1 129516351 129516490 -152677174 + FLAM_C SINE Alu 1 133 0 4401 234 34 39 chr1 129516490 129517504 -152676160 - L1MEc LINE L1 -1921 4294 3289 1180 231 70 101 chr1 129517667 129517872 -152675792 - L1MEc LINE L1 -3568 2647 2437 2606 48 0 0 chr1 129517872 129518183 -152675481 - AluY SINE Alu 0 311 1 1180 231 70 101 chr1 129518183 129518652 -152675012 - L1MEc LINE L1 -3778 2437 2039 * 1859 291 49 47 chr1 129518634 129518760 -152674904 - L1MEc LINE L1 -5255 1141 1017 2142 116 3 3 chr1 129518760 129519071 -152674593 - AluSq SINE Alu -2 311 1 1859 291 49 47 chr1 129519071 129519971 -152673693 - L1MEc LINE L1 -5379 1017 113 4042 233 66 9 chr1 129520515 129521532 -152672132 + MER69B DNA AcHobo 2 1094 -1432 2120 87 21 0 chr1 129521532 129521820 -152671844 + AluSx SINE Alu 1 294 -18 4042 233 66 9 chr1 129521820 129521961 -152671703 + MER69B DNA AcHobo 1094 1226 0 1208 189 14 14 chr1 129522008 129522220 -152671444 + THE1C LTR MaLR 1 212 -163 2181 98 3 0 chr1 129523120 129523416 -152670248 - AluSp SINE Alu -16 297 1 1844 139 20 7 chr1 129525077 129525372 -152668292 + AluSx SINE Alu 1 299 -13 252 317 16 73 chr1 129525776 129525899 -152667765 + L2 LINE L2 3184 3299 -14 649 198 9 0 chr1 129525944 129526060 -152667604 + FLAM_C SINE Alu 2 118 -25 273 243 114 0 chr1 129526373 129526443 -152667221 - MER91A DNA MER1_type -22 174 97 1992 191 20 121 chr1 129527248 129527804 -152665860 + MLT2B3 LTR ERVL 1 500 -54 393 77 0 0 chr1 129527834 129527886 -152665778 - MLT2A2 LTR ERVL -3 450 399 318 132 0 0 chr1 129527915 129527968 -152665696 + MLT2A2 LTR ERVL 401 453 0 584 359 61 23 chr1 129528117 129528387 -152665277 + L3 LINE CR1 37 324 -1253 1273 211 112 95 chr1 129528387 129528988 -152664676 - LTR36 LTR ERV1 0 611 1 584 359 61 23 chr1 129528988 129529062 -152664602 + L3 LINE CR1 324 394 -1183 253 268 14 14 chr1 129529169 129529240 -152664424 + Charlie8 DNA MER1_type 47 117 -2300 563 283 85 25 chr1 129529277 129529560 -152664104 + MLT1I LTR MaLR 41 340 -69 2074 88 0 11 chr1 129530911 129531194 -152662470 - AluSg SINE Alu -30 280 1 5616 164 30 13 chr1 129531195 129532237 -152661427 - L1 LINE L1 -1774 4372 3314 5334 148 42 25 chr1 129532242 129533327 -152660337 + L1MA7 LINE L1 5151 6252 -39 211 378 58 6 chr1 129533432 129533588 -152660076 + L2 LINE L2 2779 2942 -372 9117 13 0 0 chr1 129533886 129535693 -152657971 + L1HS LINE L1 4349 6155 0 334 393 18 11 chr1 129536339 129536619 -152657045 + L2 LINE L2 2636 2917 -397 932 275 52 60 chr1 129537047 129537432 -152656232 - L2 LINE L2 -1 3312 2931 425 324 81 32 chr1 129537432 129537679 -152655985 - MLT1J2 LTR MaLR 0 450 192 785 247 47 8 chr1 129537905 129538160 -152655504 - L2 LINE L2 -471 2843 2579 947 202 73 46 chr1 129538242 129538460 -152655204 - MER58A DNA MER1_type 0 224 1 1063 206 5 28 chr1 129539283 129539497 -152654167 + MER3 DNA MER1_type 1 209 0 568 284 82 26 chr1 129539501 129539733 -152653931 + MIR SINE MIR 8 252 -10 618 237 65 76 chr1 129540157 129540372 -152653292 + MLT1J LTR MaLR 230 443 -68 1744 166 108 19 chr1 129540372 129540734 -152652930 - MSTD LTR MaLR 0 396 3 618 237 65 76 chr1 129540734 129540780 -152652884 + MLT1J LTR MaLR 443 488 -23 862 174 5 54 chr1 129541084 129541268 -152652396 + FRAM SINE Alu 2 176 0 419 274 61 92 chr1 129541294 129541448 -152652216 + LTR67 LTR ERVL 9 166 -391 2173 95 7 3 chr1 129541448 129541753 -152651911 + AluSq SINE Alu 2 307 -6 419 274 61 92 chr1 129541753 129542106 -152651558 + LTR67 LTR ERVL 166 557 0 276 234 0 3 chr1 129542305 129542378 -152651286 - MIR SINE MIR -62 146 88 407 285 31 0 chr1 129542903 129543033 -152650631 - MIR SINE MIR -66 196 63 290 149 0 0 chr1 129543731 129543778 -152649886 + L3 LINE CR1 1054 1100 -477 632 313 40 31 chr1 129543778 129544005 -152649659 + L3 LINE CR1 1279 1507 -70 201 343 166 15 chr1 129544383 129544774 -152648890 + L2 LINE L2 2384 2833 -481 255 305 94 67 chr1 129545047 129545277 -152648387 + L2 LINE L2 2911 3152 -120 294 29 0 0 chr1 129545277 129545312 -152648352 + (TG)n Simple_repeat Simple_repeat 2 36 0 255 305 94 67 chr1 129545312 129545379 -152648285 + L2 LINE L2 3152 3216 -56 283 174 43 14 chr1 129545394 129545463 -152648201 - MLT1K LTR MaLR 0 588 518 2170 103 0 3 chr1 129546378 129546678 -152646986 + AluSx SINE Alu 1 299 -13 837 292 56 56 chr1 129547498 129547875 -152645789 + MLT1K LTR MaLR 128 504 -84 1137 257 195 5 chr1 129547877 129548458 -152645206 + L2 LINE L2 2481 3156 -157 1635 231 64 18 chr1 129548460 129548911 -152644753 - MER49 LTR ERV1 0 923 452 1161 189 10 10 chr1 129548898 129549099 -152644565 - MER72 LTR ERV1 -521 201 1 * 341 266 65 71 chr1 129549104 129549258 -152644406 + L2 LINE L2 3161 3313 0 242 0 61 0 chr1 129550498 129550531 -152643133 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 663 187 0 0 chr1 129550531 129550638 -152643026 - FLAM_C SINE Alu -22 121 15 517 248 176 101 chr1 129550648 129550705 -152642959 + MLT1G LTR MaLR 2 53 -537 2333 67 3 0 chr1 129550705 129551004 -152642660 + AluY SINE Alu 1 300 -11 517 248 176 101 chr1 129551004 129551479 -152642185 + MLT1G LTR MaLR 53 574 -16 426 279 28 33 chr1 129551698 129551915 -152641749 + L2 LINE L2 2792 3006 -307 1354 147 18 15 chr1 129551930 129552200 -152641464 + MER1B DNA MER1_type 1 339 0 598 308 89 41 chr1 129552201 129552493 -152641171 + L2 LINE L2 3008 3313 0 223 265 162 56 chr1 129552650 129552990 -152640674 + L2 LINE L2 2840 3215 -57 879 125 8 0 chr1 129553796 129553924 -152639740 - FLAM_C SINE Alu -3 130 2 279 253 81 23 chr1 129553930 129554017 -152639647 - MIR SINE MIR -116 146 55 493 357 44 0 chr1 129554655 129554837 -152638827 - MIR SINE MIR -6 256 67 351 273 0 11 chr1 129557084 129557172 -152636492 + CT-rich Low_complexity Low_complexity 2 88 0 2116 112 0 3 chr1 129558640 129558935 -152634729 + AluSg SINE Alu 1 294 -16 1643 192 35 6 chr1 129559453 129559767 -152633897 + LTR10B LTR ERV1 246 547 0 6292 223 43 28 chr1 129559767 129562213 -152631451 + LTR10B-int LTR ERV1 5 2190 -4459 3824 236 18 28 chr1 129562210 129563155 -152630509 + MER34C-int LTR ERV1 4624 5559 -1090 * 4697 222 8 11 chr1 129563162 129564111 -152629553 + MER34C-int LTR ERV1 5703 6649 0 1730 179 21 3 chr1 129564271 129564556 -152629108 + LTR10B LTR ERV1 258 547 0 1538 200 47 92 chr1 129565116 129565142 -152628522 + MER34C LTR ERV1 33 59 -526 2891 152 43 4 chr1 129565142 129565610 -152628054 - MER66B LTR ERV1 0 486 1 1538 200 47 92 chr1 129565610 129566162 -152627502 + MER34C LTR ERV1 59 585 0 518 319 72 0 chr1 129566181 129566485 -152627179 - L1ME LINE L1 -319 5802 5477 21 36 0 0 chr1 129566529 129566557 -152627107 + AT_rich Low_complexity Low_complexity 1 28 0 2011 127 0 39 chr1 129566659 129566967 -152626697 + AluJb SINE Alu 1 296 -16 2814 131 38 2 chr1 129567492 129567941 -152625723 + MER4C LTR ERV1 1 465 0 661 294 123 35 chr1 129568134 129568682 -152624982 - L1ME4a LINE L1 -209 5912 5318 26 30 0 0 chr1 129568722 129568755 -152624909 + AT_rich Low_complexity Low_complexity 1 33 0 2082 134 3 3 chr1 129568948 129569255 -152624409 - AluSx SINE Alu -5 307 1 205 328 0 0 chr1 129569618 129569685 -152623979 + T-rich Low_complexity Low_complexity 3 69 0 196 327 40 20 chr1 129571499 129571600 -152622064 - L2 LINE L2 -632 2682 2580 * 378 280 0 0 chr1 129571585 129571685 -152621979 + MER5B DNA MER1_type 79 178 0 408 272 63 19 chr1 129572346 129572504 -152621160 - MIR SINE MIR -50 212 48 577 150 143 27 chr1 129572538 129572685 -152620979 - L1MB8 LINE L1 0 6178 6015 2376 94 3 7 chr1 129572948 129573257 -152620407 - AluSx SINE Alu -4 308 1 28 48 0 0 chr1 129573672 129573714 -152619950 + AT_rich Low_complexity Low_complexity 1 42 0 216 0 0 0 chr1 129573714 129573738 -152619926 + (GA)n Simple_repeat Simple_repeat 2 25 0 1813 157 7 0 chr1 129573749 129574029 -152619635 - AluSx SINE Alu -30 282 1 314 283 17 17 chr1 129574031 129574151 -152619513 + L1ME4a LINE L1 5930 6049 -72 408 272 63 19 chr1 129574725 129574883 -152618781 - MIR SINE MIR -50 212 48 461 144 117 27 chr1 129574916 129575027 -152618637 - L1MB8 LINE L1 0 6178 6058 189 383 0 0 chr1 129575422 129575482 -152618182 - MIR SINE MIR -170 92 33 203 324 113 14 chr1 129575961 129576103 -152617561 + MIR SINE MIR 57 212 -50 189 0 0 0 chr1 129576207 129576228 -152617436 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 271 193 193 46 chr1 129576850 129576959 -152616705 - MIR3 SINE MIR -15 193 69 229 302 42 21 chr1 129577257 129577353 -152616311 + MIR SINE MIR 33 130 -78 848 263 41 30 chr1 129577429 129577695 -152615969 - MLT1E LTR MaLR -323 270 2 1849 157 4 0 chr1 129577803 129578083 -152615581 - AluJo SINE Alu -23 289 9 678 189 21 7 chr1 129578104 129578247 -152615417 + MER53 DNA DNA 45 189 0 491 254 36 7 chr1 129579558 129579746 -152613918 - MIR SINE MIR -50 212 22 246 280 122 9 chr1 129580051 129580158 -152613506 + MIR3 SINE MIR 83 201 -7 245 368 112 0 chr1 129581843 129581968 -152611696 - MIR SINE MIR -52 210 72 315 232 225 35 chr1 129581973 129582115 -152611549 - MER96 DNA MER1_type? -6 169 1 1801 174 3 22 chr1 129582535 129582852 -152610812 + AluJo SINE Alu 1 311 -1 2306 94 10 0 chr1 129583273 129583570 -152610094 + AluSp SINE Alu 1 300 -13 300 340 86 19 chr1 129584208 129584370 -152609294 + L2 LINE L2 3078 3250 -22 1952 137 0 27 chr1 129586075 129586375 -152607289 + AluSx SINE Alu 1 292 -20 252 0 0 0 chr1 129586376 129586404 -152607260 + (GA)n Simple_repeat Simple_repeat 1 28 0 747 288 45 76 chr1 129586606 129586960 -152606704 - L2 LINE L2 -1 3271 2929 456 206 5 132 chr1 129587086 129587290 -152606374 - MER104 DNA MER2_type 0 180 3 210 250 0 53 chr1 129587667 129587743 -152605921 + MER5A DNA MER1_type 103 177 -4 255 277 89 18 chr1 129588158 129588270 -152605394 + L2 LINE L2 2936 3055 -217 392 314 71 7 chr1 129588376 129588516 -152605148 + MIR SINE MIR 57 205 -57 4568 221 39 43 chr1 129588987 129589931 -152603733 + L1MC1 LINE L1 3666 4612 -1534 2258 120 0 0 chr1 129589931 129590231 -152603433 + AluSx SINE Alu 1 300 -12 4568 221 39 43 chr1 129590231 129590476 -152603188 + L1MC1 LINE L1 4612 4852 -1294 1382 110 101 0 chr1 129590476 129590685 -152602979 - MER30 DNA MER1_type 0 230 1 4568 221 39 43 chr1 129590685 129590847 -152602817 + L1MC1 LINE L1 4852 5013 -1133 6377 159 13 29 chr1 129591598 129591772 -152601892 + L1MC1 LINE L1 5004 5179 -1154 1665 175 0 15 chr1 129591772 129592046 -152601618 + AluJb SINE Alu 12 281 -31 288 0 0 0 chr1 129592048 129592080 -152601584 + (TTAAA)n Simple_repeat Simple_repeat 3 34 0 6377 159 13 29 chr1 129592080 129592749 -152600915 + L1MC1 LINE L1 5180 5816 -517 2251 117 3 0 chr1 129592749 129593049 -152600615 + AluSx SINE Alu 1 301 -11 6377 159 13 29 chr1 129593049 129593554 -152600110 + L1MC1 LINE L1 5816 6328 -5 689 178 52 159 chr1 129593555 129593864 -152599800 + HAL1 LINE L1 1335 1610 -897 1506 185 16 29 chr1 129593864 129594172 -152599492 - MER82 DNA MER2_type -349 304 1 324 345 57 30 chr1 129594578 129594842 -152598822 + L1MEd LINE L1 1289 1559 -4971 382 275 67 8 chr1 129594946 129595066 -152598598 + HAL1 LINE L1 1431 1557 -950 1235 213 4 25 chr1 129595072 129595316 -152598348 + MER8 DNA MER2_type 1 239 0 1129 276 98 88 chr1 129595878 129597216 -152596448 + L1MEd LINE L1 2451 3797 -2743 2291 91 0 28 chr1 129597233 129597552 -152596112 + AluY SINE Alu 1 310 -1 578 210 95 48 chr1 129597571 129597823 -152595841 + L1MEd LINE L1 4109 4372 -2168 1582 171 40 24 chr1 129597917 129598215 -152595449 - AluJo SINE Alu -9 303 1 478 94 0 0 chr1 129598466 129598568 -152595096 - Alu SINE Alu 0 322 221 966 70 0 0 chr1 129598568 129598683 -152594981 - AluY SINE Alu -196 115 1 857 236 20 43 chr1 129598772 129598922 -152594742 + L1MD2 LINE L1 5974 6126 -1869 201 39 0 0 chr1 129598922 129598948 -152594716 + (GA)n Simple_repeat Simple_repeat 2 27 0 857 236 20 43 chr1 129598948 129599112 -152594552 + L1MD2 LINE L1 6126 7949 -46 25 31 0 0 chr1 129599482 129599514 -152594150 + AT_rich Low_complexity Low_complexity 1 32 0 195 347 193 0 chr1 129599643 129599793 -152593871 + L2 LINE L2 2851 3029 -243 357 238 12 0 chr1 129599966 129600046 -152593618 + L2 LINE L2 3224 3304 -9 2358 87 0 0 chr1 129600409 129600697 -152592967 + AluSg SINE Alu 1 288 -22 1053 186 5 0 chr1 129600871 129601070 -152592594 + L1PB1 LINE L1 1 200 -6663 15094 177 43 14 chr1 129601070 129603227 -152590437 + L1PB1 LINE L1 634 2728 -4139 189 0 0 0 chr1 129603227 129603248 -152590416 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 15094 177 43 14 chr1 129603248 129605409 -152588255 + L1PB1 LINE L1 2728 5325 -1542 2680 58 0 0 chr1 129605409 129605720 -152587944 + AluY SINE Alu 1 311 0 15094 177 43 14 chr1 129605720 129607309 -152586355 + L1PB1 LINE L1 5325 6867 0 1638 171 9 41 chr1 129607359 129607675 -152585989 + AluJb SINE Alu 6 311 -1 183 42 0 0 chr1 129608243 129608267 -152585397 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2067 122 0 0 chr1 129608267 129608545 -152585119 - AluSg SINE Alu -32 278 1 2355 57 23 36 chr1 129608558 129608859 -152584805 - AluY SINE Alu -14 297 1 1868 151 0 7 chr1 129608891 129609169 -152584495 + AluJb SINE Alu 5 280 -32 204 40 0 0 chr1 129609169 129609194 -152584470 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 3257 126 56 4 chr1 129609532 129610065 -152583599 - L1MC1 LINE L1 -11 6322 5762 2746 98 65 160 chr1 129610065 129610551 -152583113 + LTR38B LTR ERV1 1 407 -203 2129 112 17 0 chr1 129610551 129610845 -152582819 - AluSc SINE Alu -10 299 1 2746 98 65 160 chr1 129610845 129611032 -152582632 + LTR38B LTR ERV1 407 610 0 423 126 42 6 chr1 129611032 129611115 -152582549 - L1MC1 LINE L1 -568 5765 5672 711 148 246 0 chr1 129611762 129611904 -152581760 + LTR38B LTR ERV1 269 445 -165 192 77 0 0 chr1 129611904 129611930 -152581734 + (T)n Simple_repeat Simple_repeat 1 26 0 1073 221 97 68 chr1 129612161 129612690 -152580974 - MER39 LTR ERV1 0 707 1 1091 253 146 16 chr1 129613210 129613641 -152580023 - LTR33 LTR ERVL -2 519 33 249 275 12 12 chr1 129614305 129614385 -152579279 - L2 LINE L2 0 3272 3193 2205 131 0 0 chr1 129614393 129614705 -152578959 + AluSx SINE Alu 1 312 0 2250 85 41 0 chr1 129615523 129615816 -152577848 + AluY SINE Alu 1 305 -6 351 0 0 0 chr1 129617251 129617290 -152576374 + (CA)n Simple_repeat Simple_repeat 2 40 0 548 296 70 70 chr1 129617506 129618060 -152575604 - LTR67 LTR ERVL -2 555 2 1098 318 77 33 chr1 129618130 129618583 -152575081 + L1MEd LINE L1 3 500 -5619 2317 103 0 3 chr1 129618583 129618894 -152574770 + AluSq SINE Alu 1 310 -3 1098 318 77 33 chr1 129618894 129619158 -152574506 + L1MEd LINE L1 500 751 -5368 2253 112 0 0 chr1 129619171 129619465 -152574199 + AluSx SINE Alu 1 294 -18 2942 99 0 17 chr1 129619503 129619943 -152573721 + MER1A DNA MER1_type 59 528 -1 323 291 122 17 chr1 129620033 129620205 -152573459 + L1MEd LINE L1 958 1147 -4972 1665 169 0 67 chr1 129620299 129620612 -152573052 + AluJo SINE Alu 1 292 -20 1684 100 45 22 chr1 129621031 129621300 -152572364 + L1MA4A LINE L1 6022 6296 -7 504 261 83 50 chr1 129621405 129621742 -152571922 + L1MEd LINE L1 1213 1628 -862 737 253 69 75 chr1 129622694 129623070 -152570594 - MLT1I LTR MaLR -6 403 30 1671 183 0 0 chr1 129624903 129625187 -152568477 + AluJb SINE Alu 14 297 -15 195 114 0 0 chr1 129626188 129626223 -152567441 + (CAATT)n Simple_repeat Simple_repeat 1 35 0 2138 100 0 24 chr1 129626877 129627199 -152566465 + AluSg SINE Alu 2 316 0 2729 155 74 33 chr1 129627447 129627963 -152565701 + MER68 LTR ERV1 25 561 -1 808 265 74 52 chr1 129628042 129628502 -152565162 - HAL1 LINE L1 -17 2490 2021 2941 259 125 61 chr1 129628645 129630338 -152563326 - HAL1 LINE L1 -698 1809 8 489 302 28 22 chr1 129630491 129630670 -152562994 + MER5A DNA MER1_type 10 189 0 1317 254 170 16 chr1 129631243 129631802 -152561862 - L1ME4a LINE L1 -2 6119 5475 474 280 113 24 chr1 129631795 129632131 -152561533 - HAL1 LINE L1 -5 2502 2137 * 896 200 23 6 chr1 129632673 129632848 -152560816 + MER20 DNA MER1_type 1 178 -41 2164 64 14 37 chr1 129632910 129633207 -152560457 - AluSx SINE Alu -22 290 1 387 280 48 36 chr1 129634126 129634294 -152559370 - MIR SINE MIR -10 252 83 1909 131 8 105 chr1 129634836 129635225 -152558439 - MER54B LTR ERVL -2 791 441 1904 148 62 15 chr1 129635204 129635529 -152558135 - MER54B LTR ERVL -453 340 1 * 2273 102 16 0 chr1 129635680 129635984 -152557680 + AluSx SINE Alu 1 309 -3 435 251 194 31 chr1 129636308 129636499 -152557165 + MIR SINE MIR 7 228 -34 213 208 97 28 chr1 129636520 129636592 -152557072 + L2 LINE L2 3189 3265 -7 2292 120 52 12 chr1 129637255 129637579 -152556085 + MER1B DNA MER1_type 1 337 0 1872 164 68 37 chr1 129637875 129638143 -152555521 - MLT1A1 LTR MaLR 0 365 82 2168 110 13 10 chr1 129638143 129638452 -152555212 - AluSp SINE Alu -1 312 3 1872 164 68 37 chr1 129638452 129638537 -152555127 - MLT1A1 LTR MaLR -283 82 1 2252 90 3 10 chr1 129638701 129639002 -152554662 - AluY SINE Alu -12 299 1 1247 267 98 12 chr1 129639196 129639332 -152554332 + L3 LINE CR1 581 704 -873 551 213 128 30 chr1 129639332 129639496 -152554168 + MER104 DNA MER2_type 1 180 0 1247 267 98 12 chr1 129639496 129639861 -152553803 + L3 LINE CR1 704 1125 -452 206 237 68 68 chr1 129640145 129640263 -152553401 + MIR SINE MIR 17 134 -74 220 266 70 16 chr1 129640995 129641123 -152552541 + L2 LINE L2 3106 3240 -73 210 118 0 0 chr1 129641915 129641949 -152551715 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 211 340 94 0 chr1 129641968 129642074 -152551590 - MIR SINE MIR -31 231 116 577 107 50 8 chr1 129642196 129642317 -152551347 + CT-rich Low_complexity Low_complexity 1 126 0 1775 166 10 20 chr1 129642317 129642619 -152551045 - AluJb SINE Alu -13 299 1 226 342 45 9 chr1 129642701 129642812 -152550852 + L3 LINE CR1 679 793 -784 285 300 44 0 chr1 129643147 129643237 -152550427 + MIR SINE MIR 155 248 -14 328 335 18 44 chr1 129643237 129643464 -152550200 - L1ME LINE L1 -367 5754 5534 2016 130 51 3 chr1 129643490 129643782 -152549882 - AluSx SINE Alu -6 306 1 23 33 0 0 chr1 129643790 129643820 -152549844 + AT_rich Low_complexity Low_complexity 1 30 0 388 167 89 0 chr1 129644280 129644370 -152549294 + MLT1C LTR MaLR 370 467 0 1114 291 37 49 chr1 129644383 129644892 -152548772 + L2 LINE L2 2811 3313 0 206 32 32 0 chr1 129644908 129644939 -152548725 + (TG)n Simple_repeat Simple_repeat 1 32 0 397 292 57 43 chr1 129644941 129645150 -152548514 - MIR SINE MIR -18 244 33 571 144 0 10 chr1 129646493 129646590 -152547074 - L1MD2 LINE L1 -370 5989 5894 * 4918 182 21 41 chr1 129646588 129647969 -152545695 - L1MD1 LINE L1 0 6636 5228 1179 181 16 32 chr1 129647969 129648218 -152545446 + L1MB8 LINE L1 5925 6169 -9 4918 182 21 41 chr1 129648218 129648496 -152545168 - L1MD1 LINE L1 -1408 5228 4981 1363 192 109 13 chr1 129648496 129648808 -152544856 - MER2 DNA MER2_type -2 342 1 4918 182 21 41 chr1 129648808 129648872 -152544792 - L1MD1 LINE L1 -1655 4981 4917 631 107 25 25 chr1 129648911 129649159 -152544505 + (TA)n Simple_repeat Simple_repeat 1 248 0 6129 230 32 28 chr1 129649165 129651057 -152542607 - L1MD1 LINE L1 -1612 4928 3028 2091 139 10 0 chr1 129651069 129651378 -152542286 - AluSx SINE Alu 0 312 1 3947 166 69 58 chr1 129651378 129652486 -152541178 - L1MD1 LINE L1 -4157 2383 1261 432 343 12 0 chr1 129653011 129653177 -152540487 + L2 LINE L2 695 862 -2452 1719 147 60 0 chr1 129653184 129653484 -152540180 + L1MC1 LINE L1 5835 6152 -181 2008 156 80 11 chr1 129653489 129653862 -152539802 - MSTB1 LTR MaLR -33 399 1 1104 118 15 67 chr1 129653863 129654058 -152539606 + L1MC1 LINE L1 6149 6333 0 831 326 114 44 chr1 129654070 129654337 -152539327 + L2 LINE L2 877 1124 -2190 2098 84 53 7 chr1 129654337 129654622 -152539042 - AluSg SINE Alu -12 298 1 831 326 114 44 chr1 129654622 129655126 -152538538 + L2 LINE L2 1124 1702 -1612 282 71 3 46 chr1 129655127 129655177 -152538487 + L1ME4a LINE L1 5373 5421 -762 1942 98 0 4 chr1 129655180 129655426 -152538238 - AluSq SINE Alu -68 245 1 457 248 86 0 chr1 129655682 129655799 -152537865 + MIR SINE MIR 21 147 -115 262 73 24 0 chr1 129655811 129655852 -152537812 - L2 LINE L2 -7 3306 3265 738 186 8 0 chr1 129655853 129655977 -152537687 - MLT1A1 LTR MaLR -36 329 205 402 57 0 0 chr1 129656279 129656332 -152537332 + (TC)n Simple_repeat Simple_repeat 2 54 0 324 0 0 0 chr1 129656332 129656368 -152537296 + (CA)n Simple_repeat Simple_repeat 1 36 0 241 171 24 0 chr1 129656379 129656420 -152537244 + LTR33 LTR ERVL 479 520 -1 1075 248 106 43 chr1 129656448 129656675 -152536989 + L1ME4a LINE L1 5417 5628 -534 676 186 77 77 chr1 129656675 129656737 -152536927 - MER5A DNA MER1_type -2 187 126 2774 22 0 6 chr1 129656737 129657050 -152536614 + AluY SINE Alu 1 311 0 676 186 77 77 chr1 129657050 129657170 -152536494 - MER5A DNA MER1_type -62 127 5 1075 248 106 43 chr1 129657170 129657357 -152536307 + L1ME4a LINE L1 5628 5857 -305 629 290 116 29 chr1 129658217 129658562 -152535102 - L3 LINE CR1 -142 1435 1061 1985 183 80 54 chr1 129658562 129659099 -152534565 - MER34B LTR ERV1 -4 561 11 912 263 65 65 chr1 129659502 129659886 -152533778 - MLT1J2 LTR MaLR -28 422 39 413 286 29 0 chr1 129659933 129660038 -152533626 - Charlie1 DNA MER1_type -2652 109 2 2343 109 49 55 chr1 129662009 129662157 -152531507 + THE1B LTR MaLR 1 148 -216 2142 127 3 22 chr1 129662157 129662473 -152531191 - AluSp SINE Alu -1 312 3 2343 109 49 55 chr1 129662473 129662690 -152530974 + THE1B LTR MaLR 148 364 0 12565 93 6 6 chr1 129662690 129664271 -152529393 + THE1B-int LTR MaLR 1 1580 0 2553 97 57 17 chr1 129664271 129664621 -152529043 + THE1B LTR MaLR 1 364 0 728 200 0 8 chr1 129665120 129665245 -152528419 + FLAM_A SINE Alu 1 124 -9 294 225 50 25 chr1 129665264 129665344 -152528320 + U6 snRNA snRNA 24 105 -2 21 36 0 0 chr1 129665367 129665395 -152528269 + AT_rich Low_complexity Low_complexity 1 28 0 293 208 48 72 chr1 129665433 129665449 -152528215 + L1ME4a LINE L1 5966 5981 -140 1836 143 3 29 chr1 129665449 129665757 -152527907 + AluSg SINE Alu 3 302 -8 293 208 48 72 chr1 129665757 129665865 -152527799 + L1ME4a LINE L1 5981 6087 -34 590 290 59 0 chr1 129665920 129666106 -152527558 - MIR SINE MIR -46 216 20 2057 107 14 0 chr1 129666578 129666868 -152526796 - AluSp SINE Alu -17 296 3 596 131 0 0 chr1 129666869 129666953 -152526711 - MLT1A1 LTR MaLR -281 84 1 2151 90 3 10 chr1 129667117 129667418 -152526246 - AluY SINE Alu -12 299 1 1307 267 98 12 chr1 129667612 129667748 -152525916 + L3 LINE CR1 581 704 -873 502 213 128 30 chr1 129667748 129667912 -152525752 + MER104 DNA MER2_type 1 180 0 1307 267 98 12 chr1 129667912 129668277 -152525387 + L3 LINE CR1 704 1125 -452 874 288 66 26 chr1 129668769 129669147 -152524517 + L3 LINE CR1 1116 1508 -69 439 349 12 0 chr1 129671804 129671970 -152521694 + L2 LINE L2 695 862 -2452 1717 150 60 0 chr1 129671977 129672277 -152521387 + L1MC1 LINE L1 5835 6152 -181 2096 155 75 11 chr1 129672282 129672657 -152521007 - MSTB1 LTR MaLR -33 399 1 1042 118 15 67 chr1 129672658 129672853 -152520811 + L1MC1 LINE L1 6149 6333 0 886 317 118 48 chr1 129672865 129673132 -152520532 + L2 LINE L2 877 1124 -2190 1998 84 53 7 chr1 129673132 129673417 -152520247 - AluSg SINE Alu -12 298 1 886 317 118 48 chr1 129673417 129673921 -152519743 + L2 LINE L2 1124 1702 -1612 273 82 0 42 chr1 129673924 129673972 -152519692 + L1ME LINE L1 5374 5421 -750 1846 98 0 4 chr1 129673975 129674221 -152519443 - AluSq SINE Alu -68 245 1 468 248 86 0 chr1 129674477 129674594 -152519070 + MIR SINE MIR 21 147 -115 268 73 24 0 chr1 129674606 129674647 -152519017 - L2 LINE L2 -7 3306 3265 728 186 8 0 chr1 129674648 129674772 -152518892 - MLT1A1 LTR MaLR -36 329 205 384 59 0 0 chr1 129675074 129675125 -152518539 + (TC)n Simple_repeat Simple_repeat 2 52 0 360 0 0 0 chr1 129675125 129675165 -152518499 + (CA)n Simple_repeat Simple_repeat 1 40 0 248 167 24 0 chr1 129675176 129675218 -152518446 + LTR33 LTR ERVL 479 521 0 876 252 66 4 chr1 129675245 129675471 -152518193 + L1ME LINE L1 5417 5656 -506 339 148 16 16 chr1 129675472 129675533 -152518131 - MER5A DNA MER1_type -2 187 127 2585 26 0 7 chr1 129675534 129675841 -152517823 + AluY SINE Alu 1 305 -6 22 0 0 0 chr1 129676641 129676663 -152517001 + AT_rich Low_complexity Low_complexity 1 22 0 2087 88 3 42 chr1 129676837 129677143 -152516521 + AluSp SINE Alu 1 294 -19 726 296 38 62 chr1 129677822 129678291 -152515373 - L1MC/D LINE L1 -2017 5791 5334 649 272 132 14 chr1 129678517 129678730 -152514934 - MIR SINE MIR -5 257 20 398 300 128 73 chr1 129679325 129679455 -152514209 + L2 LINE L2 2866 2987 -285 3532 63 2 0 chr1 129679455 129679899 -152513765 - L1PA5 LINE L1 0 6154 5710 398 300 128 73 chr1 129679899 129680151 -152513513 + L2 LINE L2 2987 3269 -3 1372 268 107 0 chr1 129680624 129681009 -152512655 - LTR16A LTR ERVL -8 442 17 448 298 167 0 chr1 129681128 129681296 -152512368 - LTR16C LTR ERVL -94 397 202 441 293 75 7 chr1 129681655 129681802 -152511862 + MIR SINE MIR 66 222 -40 276 100 0 0 chr1 129682693 129682733 -152510931 + (CA)n Simple_repeat Simple_repeat 1 40 0 448 228 33 0 chr1 129683948 129684040 -152509624 - MER5A DNA MER1_type -86 103 9 2638 152 67 32 chr1 129684486 129684606 -152509058 - L1MB4 LINE L1 0 6180 6066 2404 57 0 3 chr1 129684606 129684906 -152508758 - AluY SINE Alu -12 299 1 2638 152 67 32 chr1 129684906 129685319 -152508345 - L1MB4 LINE L1 -114 6066 5628 311 174 58 0 chr1 129685347 129685416 -152508248 - L1MB4 LINE L1 -543 5640 5568 21 0 0 0 chr1 129685416 129685437 -152508227 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chr1 129686398 129686438 -152507226 + (CA)n Simple_repeat Simple_repeat 2 41 0 2172 84 11 0 chr1 129686833 129687117 -152506547 + AluSg SINE Alu 1 287 -23 243 75 0 0 chr1 129687129 129687169 -152506495 - Alu SINE Alu -1 302 263 991 77 0 0 chr1 129687751 129687881 -152505783 + AluSp/q SINE Alu 163 292 -21 3268 275 61 30 chr1 129687885 129689440 -152504224 + L1MEc LINE L1 38 1641 -4755 1850 162 0 0 chr1 129689955 129690252 -152503412 - AluSx SINE Alu -15 297 1 273 283 40 20 chr1 129691402 129691501 -152502163 + MIR SINE MIR 65 165 -97 2271 155 53 24 chr1 129691503 129691917 -152501747 - MSTB LTR MaLR 0 426 1 448 356 69 41 chr1 129693420 129693813 -152499851 - L2 LINE L2 -4 3268 2865 747 246 89 0 chr1 129694035 129694214 -152499450 - MIR SINE MIR 0 262 68 1365 172 0 5 chr1 129694260 129694481 -152499183 - MLT1G1 LTR MaLR -372 223 4 2186 118 0 0 chr1 129694844 129695148 -152498516 + AluSq SINE Alu 1 304 -9 1569 178 0 71 chr1 129695510 129695836 -152497828 - AluJb SINE Alu -9 303 1 1936 133 13 0 chr1 129695865 129696167 -152497497 - AluSx SINE Alu -6 306 1 22 35 0 0 chr1 129696316 129696345 -152497319 + AT_rich Low_complexity Low_complexity 1 29 0 186 215 67 121 chr1 129696683 129696832 -152496832 - L3 LINE CR1 -307 1270 1130 889 141 96 0 chr1 129697255 129697411 -152496253 + MER96 DNA MER1_type 1 171 -4 2246 105 0 0 chr1 129697627 129697933 -152495731 + AluSq SINE Alu 1 306 -7 370 224 94 59 chr1 129698475 129698645 -152495019 + L1ME4a LINE L1 5728 5903 -218 253 349 0 0 chr1 129698904 129698970 -152494694 + MIR SINE MIR 21 86 -176 824 143 0 27 chr1 129698976 129699123 -152494541 - FLAM_C SINE Alu 0 143 1 505 267 182 0 chr1 129699124 129699289 -152494375 + MIR SINE MIR 67 261 -1 504 131 50 20 chr1 129700748 129700847 -152492817 - L1MA1 LINE L1 -7 6295 6194 467 158 38 0 chr1 129700865 129700998 -152492666 - MER63B DNA MER1_type -92 342 205 1375 171 77 115 chr1 129700998 129701466 -152492198 + LTR7 LTR ERV1 1 450 0 1957 208 54 12 chr1 129701466 129701894 -152491770 + HERVH LTR ERV1 1 446 -7267 10187 132 32 30 chr1 129701960 129703667 -152489997 + HERVH LTR ERV1 800 2509 -5204 17674 102 6 36 chr1 129703767 129706455 -152487209 + HERVH LTR ERV1 2415 5020 -2693 2771 120 7 12 chr1 129706460 129706892 -152486772 + HERVH LTR ERV1 7284 7713 0 1833 122 36 8 chr1 129706892 129707243 -152486421 + LTR7 LTR ERV1 1 450 0 908 220 38 29 chr1 129707243 129707452 -152486212 - MER63B DNA MER1_type -225 211 1 1797 103 141 0 chr1 129708264 129708527 -152485137 + AluSg SINE Alu 1 300 0 394 161 0 12 chr1 129708540 129708621 -152485043 + GA-rich Low_complexity Low_complexity 3 82 0 1649 268 76 29 chr1 129708670 129708828 -152484836 + L2 LINE L2 2349 2498 -815 1906 147 10 0 chr1 129708828 129709134 -152484530 - AluSx SINE Alu -1 311 3 1649 268 76 29 chr1 129709134 129709864 -152483800 + L2 LINE L2 2498 3288 -25 602 225 205 54 chr1 129709864 129710122 -152483542 - MLT1F1 LTR MaLR -2 563 257 2083 118 3 3 chr1 129710142 129710447 -152483217 - AluSg SINE Alu -4 306 2 292 272 0 61 chr1 129710497 129710611 -152483053 + GA-rich Low_complexity Low_complexity 1 107 0 1284 262 48 37 chr1 129711704 129712166 -152481498 - MLT1J LTR MaLR -44 467 1 1420 214 61 17 chr1 129712336 129712682 -152480982 - MLT1A1 LTR MaLR -4 361 1 1720 110 0 0 chr1 129713344 129713589 -152480075 - AluSg/x SINE Alu -1 311 67 886 190 70 50 chr1 129713592 129713792 -152479872 - AluJo SINE Alu -24 288 85 4214 118 71 57 chr1 129713959 129714733 -152478931 - LTR1 LTR ERV1 0 785 1 2381 102 0 3 chr1 129714869 129715174 -152478490 - AluSx SINE Alu -2 310 7 389 286 135 31 chr1 129715489 129715681 -152477983 + MIR SINE MIR 47 258 -4 339 281 177 5 chr1 129715719 129715911 -152477753 + MIR SINE MIR 22 246 -16 21 0 0 0 chr1 129716706 129716727 -152476937 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr1 129717029 129717072 -152476592 + (TG)n Simple_repeat Simple_repeat 1 43 0 307 278 70 9 chr1 129718050 129718165 -152475499 - MIR SINE MIR -56 206 85 28 29 0 0 chr1 129718209 129718244 -152475420 + AT_rich Low_complexity Low_complexity 1 35 0 2280 118 0 0 chr1 129718360 129718656 -152475008 - AluSx SINE Alu -15 297 2 184 222 206 0 chr1 129719315 129719378 -152474286 - MIR SINE MIR -108 154 79 324 320 66 17 chr1 129719399 129719580 -152474084 + MIR SINE MIR 22 211 -51 1240 237 52 55 chr1 129719712 129720290 -152473374 - L1MC5 LINE L1 -69 7892 7317 733 211 81 0 chr1 129720423 129720584 -152473080 - MER69A DNA AcHobo -3 174 1 399 195 98 30 chr1 129720620 129720789 -152472875 - L1MC5 LINE L1 -728 7233 7086 534 235 43 27 chr1 129720789 129720848 -152472816 - LTR41 LTR ERVL 0 773 716 2186 123 0 3 chr1 129720848 129721150 -152472514 - AluSg SINE Alu -9 301 1 534 235 43 27 chr1 129721150 129721277 -152472387 - LTR41 LTR ERVL -57 716 584 2094 159 47 34 chr1 129721405 129721948 -152471716 - MLT2A2 LTR ERVL 0 554 1 1970 153 0 7 chr1 129721993 129722288 -152471376 + AluSx SINE Alu 1 293 -19 733 216 38 27 chr1 129722370 129722555 -152471109 - LTR41 LTR ERVL -586 187 1 588 166 26 114 chr1 129722559 129722752 -152470912 - L1MC5 LINE L1 -880 7081 6906 975 282 74 19 chr1 129723138 129723665 -152469999 + MLT1F1 LTR MaLR 1 497 -33 1950 145 21 0 chr1 129723671 129723960 -152469704 + AluSx SINE Alu 6 300 -12 2280 87 0 19 chr1 129723960 129724272 -152469392 + AluY SINE Alu 1 306 -5 640 168 0 0 chr1 129724321 129724422 -152469242 + MER63 DNA MER1_type 961 1061 -1 208 211 0 0 chr1 129725340 129725378 -152468286 + CT-rich Low_complexity Low_complexity 2 39 0 3017 80 13 47 chr1 129725403 129725867 -152467797 + LTR7 LTR ERV1 1 448 -2 1762 242 81 32 chr1 129726006 129726156 -152467508 + L1MC4 LINE L1 6479 6620 -1422 3922 88 22 25 chr1 129726156 129726274 -152467390 - MER41A LTR ERV1 0 554 437 2479 67 0 13 chr1 129726274 129726574 -152467090 + AluY SINE Alu 1 296 -15 3922 88 22 25 chr1 129726574 129727011 -152466653 - MER41A LTR ERV1 -117 437 1 1762 242 81 32 chr1 129727011 129727489 -152466175 + L1MC4 LINE L1 6620 7138 -904 607 194 0 0 chr1 129727490 129727588 -152466076 + AluJb SINE Alu 188 285 -27 212 83 0 28 chr1 129727592 129727628 -152466036 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 371 161 0 0 chr1 129727634 129727696 -152465968 + L1MC4 LINE L1 7162 7223 -819 1226 185 5 14 chr1 129728004 129728226 -152465438 + AluJo SINE Alu 1 220 -92 278 156 42 113 chr1 129728226 129728349 -152465315 + AluJo/FLAM SINE Alu 86 128 -174 264 277 20 40 chr1 129728323 129728424 -152465240 + FLAM_A SINE Alu 35 133 0 * 263 255 113 14 chr1 129728424 129728565 -152465099 - MIR SINE MIR -6 256 102 574 161 22 128 chr1 129728904 129728986 -152464678 + MER97a DNA MER1_type? 19 73 -821 2061 120 0 29 chr1 129728986 129729294 -152464370 + AluSx SINE Alu 1 299 -13 574 161 22 128 chr1 129729294 129729391 -152464273 + MER97a DNA MER1_type? 73 179 -715 234 286 0 0 chr1 129730787 129730836 -152462828 + LTR67 LTR ERVL 429 477 -80 742 185 0 8 chr1 129730992 129731122 -152462542 + FRAM SINE Alu 34 162 -14 29 28 0 0 chr1 129731122 129731158 -152462506 + AT_rich Low_complexity Low_complexity 1 36 0 2157 104 0 10 chr1 129731169 129731468 -152462196 + AluSx SINE Alu 5 300 -12 706 200 0 15 chr1 129731514 129731671 -152461993 + FLAM_C SINE Alu 1 155 0 487 240 15 61 chr1 129731675 129731752 -152461912 + L1ME1 LINE L1 2140 2219 -3927 2582 68 0 0 chr1 129731752 129732062 -152461602 + AluY SINE Alu 1 310 -1 487 240 15 61 chr1 129732062 129732180 -152461484 + L1ME1 LINE L1 2219 2326 -3820 * 3872 228 40 9 chr1 129732168 129733087 -152460577 + L1ME1 LINE L1 5218 6166 0 481 253 0 151 chr1 129733151 129733169 -152460495 - MLT1L LTR MaLR -332 283 264 2108 142 3 0 chr1 129733169 129733478 -152460186 + AluSg SINE Alu 1 310 0 481 253 0 151 chr1 129733478 129733744 -152459920 - MLT1L LTR MaLR -351 264 42 680 215 0 15 chr1 129733745 129733880 -152459784 + FLAM_C SINE Alu 1 133 0 550 271 32 37 chr1 129733927 129734115 -152459549 - MLT1J2 LTR MaLR 0 450 264 285 311 28 13 chr1 129734142 129734288 -152459376 - MLT1J LTR MaLR -205 204 64 1799 154 14 4 chr1 129734433 129734754 -152458910 - AluJb SINE Alu 0 324 1 633 226 32 26 chr1 129734780 129734970 -152458694 - MIR SINE MIR -70 192 2 333 118 0 0 chr1 129735480 129735531 -152458133 - MADE1 DNA Mariner 0 80 30 406 190 0 0 chr1 129735943 129736022 -152457642 + MIR3 SINE MIR 82 160 -48 277 292 119 82 chr1 129736116 129736335 -152457329 - L2 LINE L2 -15 3257 3031 521 325 6 0 chr1 129736603 129736769 -152456895 + LTR16C LTR ERVL 320 486 -5 1864 151 7 36 chr1 129737499 129737804 -152455860 + AluJo SINE Alu 1 296 -16 368 291 133 24 chr1 129739249 129739378 -152454286 - L3 LINE CR1 -283 1294 1181 1026 147 16 21 chr1 129739378 129739568 -152454096 + MER53 DNA DNA 1 189 0 368 291 133 24 chr1 129739568 129739648 -152454016 - L3 LINE CR1 -396 1181 1062 219 304 65 29 chr1 129740465 129740603 -152453061 - L3b LINE CR1 -63 1520 1378 283 287 89 0 chr1 129741866 129741967 -152451697 + L2 LINE L2 3193 3302 -11 221 262 16 0 chr1 129741940 129742001 -152451663 - L2 LINE L2 0 3313 3252 * 293 61 102 0 chr1 129742439 129742488 -152451176 - L1MB4 LINE L1 -4 6176 6123 364 164 16 0 chr1 129742490 129742551 -152451113 - FLAM SINE Alu -7 126 65 1684 162 0 35 chr1 129742597 129742912 -152450752 + AluJb SINE Alu 7 310 -2 274 279 14 0 chr1 129742943 129743033 -152450631 - FRAM/FAM SINE Alu -108 58 1 302 143 54 0 chr1 129743033 129743089 -152450575 - L1MB4 LINE L1 -45 6135 6077 201 289 170 22 chr1 129743636 129743771 -152449893 + MIR3 SINE MIR 30 184 -24 309 236 85 38 chr1 129744739 129744845 -152448819 - L2 LINE L2 -2 3311 3201 1425 179 75 4 chr1 129745607 129745875 -152447789 - AluJo SINE Alu -25 287 1 343 281 123 14 chr1 129746189 129746335 -152447329 + MIR SINE MIR 27 188 -74 270 242 359 0 chr1 129746397 129746525 -152447139 + MER5A DNA MER1_type 13 186 -3 195 42 0 0 chr1 129747357 129747381 -152446283 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 632 178 34 0 chr1 129747384 129747502 -152446162 - FRAM SINE Alu -30 146 25 830 193 42 33 chr1 129747503 129747715 -152445949 - MIR SINE MIR -48 214 1 474 263 90 19 chr1 129747808 129747964 -152445700 + MIR3 SINE MIR 38 204 -4 2099 143 0 0 chr1 129748594 129748888 -152444776 - AluSx SINE Alu -18 294 1 22 0 0 0 chr1 129751205 129751227 -152442437 + AT_rich Low_complexity Low_complexity 1 22 0 2351 103 0 0 chr1 129752108 129752409 -152441255 - AluSg1 SINE Alu -8 301 1 2188 123 3 0 chr1 129753117 129753417 -152440247 + AluSx SINE Alu 8 308 -4 1993 251 112 6 chr1 129754722 129755268 -152438396 - MLT2E LTR ERVL -7 621 18 1704 154 14 41 chr1 129755490 129755783 -152437881 - AluJb SINE Alu -11 301 17 1287 295 118 16 chr1 129756804 129757640 -152436024 + L2 LINE L2 2131 3061 -252 306 357 52 5 chr1 129758178 129758388 -152435276 + L2 LINE L2 1989 2208 -1106 1241 161 55 55 chr1 129759023 129759259 -152434405 + MER46A DNA MER2_type 1 236 0 355 196 113 45 chr1 129760835 129760968 -152432696 + MIR SINE MIR 46 187 -75 704 298 156 49 chr1 129761165 129762082 -152431582 - L1MEc LINE L1 -4240 2156 1071 1775 170 0 3 chr1 129762082 129762411 -152431253 - AluJo SINE Alu 0 328 1 704 298 156 49 chr1 129762411 129762727 -152430937 - L1MEc LINE L1 -5325 1071 790 270 325 76 36 chr1 129764465 129764745 -152428919 - L2 LINE L2 -191 3081 2792 831 256 58 13 chr1 129764757 129765066 -152428598 - L2 LINE L2 0 3313 2991 242 125 21 0 chr1 129765274 129765322 -152428342 + GA-rich Low_complexity Low_complexity 1 49 0 212 346 0 0 chr1 129766658 129766736 -152426928 + L2 LINE L2 2164 2241 -1073 893 213 0 0 chr1 129766783 129766943 -152426721 - FRAM SINE Alu -15 161 2 384 220 40 50 chr1 129767075 129767175 -152426489 - MER91C DNA MER1_type -18 122 24 324 366 64 48 chr1 129768143 129768564 -152425100 - L2 LINE L2 -3 3269 2842 266 331 53 13 chr1 129768723 129768874 -152424790 + L2 LINE L2 3153 3309 -4 1059 255 65 42 chr1 129769136 129769567 -152424097 - MLT1J1 LTR MaLR 0 446 6 1932 140 0 14 chr1 129769620 129769913 -152423751 + AluJb SINE Alu 15 303 -9 523 278 83 32 chr1 129770040 129770256 -152423408 - MIR SINE MIR 0 262 36 396 265 59 15 chr1 129871838 129871974 -152321690 + MIR SINE MIR 111 252 -10 207 162 0 0 chr1 129872255 129872292 -152321372 + T-rich Low_complexity Low_complexity 1 37 0 884 244 120 50 chr1 129872540 129872989 -152320675 + MLT1H LTR MaLR 3 529 -13 294 148 0 0 chr1 129873623 129873677 -152319987 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 2405 80 0 0 chr1 129874030 129874331 -152319333 - AluY SINE Alu -10 301 1 291 324 75 80 chr1 129874350 129874736 -152318928 + L2 LINE L2 2578 2961 -353 3217 173 33 74 chr1 129874996 129875715 -152317949 - LTR8 LTR ERV1 -1 690 1 638 241 31 157 chr1 129875758 129875825 -152317839 - MIR SINE MIR -1 261 187 2590 53 0 0 chr1 129875825 129876125 -152317539 + L1PA5 LINE L1 5855 6154 0 638 241 31 157 chr1 129876125 129876343 -152317321 - MIR SINE MIR -75 187 12 1635 214 136 5 chr1 129877519 129877954 -152315710 - Charlie4a DNA MER1_type -16 492 1 1126 158 0 0 chr1 129877959 129878130 -152315534 + AluSg/x SINE Alu 133 303 -7 255 291 0 13 chr1 129879292 129879371 -152314293 - MER116 DNA Mariner -2 78 1 1940 156 61 45 chr1 129879786 129880145 -152313519 - MLT1A1 LTR MaLR 0 365 1 217 353 161 18 chr1 129880237 129880628 -152313036 + L2 LINE L2 1714 2160 -1154 29 60 0 0 chr1 129880899 129880949 -152312715 + AT_rich Low_complexity Low_complexity 1 50 0 42 20 0 0 chr1 129882087 129882136 -152311528 + AT_rich Low_complexity Low_complexity 1 49 0 245 284 71 71 chr1 129882141 129882296 -152311368 - L1ME3A LINE L1 -51 6119 5965 2101 110 41 3 chr1 129882321 129882611 -152311053 - AluSq SINE Alu -12 301 1 687 266 88 44 chr1 129882661 129882958 -152310706 - L1ME3A LINE L1 -208 5962 5653 2251 106 7 0 chr1 129883146 129883439 -152310225 + AluSx SINE Alu 1 295 -17 456 362 147 0 chr1 129885662 129885941 -152307723 + L2 LINE L2 2949 3268 -4 414 263 65 17 chr1 129886091 129886221 -152307443 - MIR SINE MIR -69 139 19 499 308 36 5 chr1 129887205 129887400 -152306264 - MIR SINE MIR -34 228 28 917 133 7 0 chr1 129887538 129887673 -152305991 - AluJo SINE Alu -176 136 1 39 50 0 0 chr1 129888025 129888085 -152305579 + AT_rich Low_complexity Low_complexity 1 60 0 556 284 53 37 chr1 129888883 129889073 -152304591 + MIR3 SINE MIR 3 195 -13 414 0 0 0 chr1 129889151 129889197 -152304467 + (TG)n Simple_repeat Simple_repeat 1 46 0 30 27 0 0 chr1 129889639 129889676 -152303988 + AT_rich Low_complexity Low_complexity 1 37 0 326 287 90 60 chr1 129890681 129890848 -152302816 - MIR SINE MIR -2 260 89 296 94 19 0 chr1 129891154 129891207 -152302457 + (TA)n Simple_repeat Simple_repeat 1 54 0 1643 184 14 3 chr1 129891544 129891837 -152301827 + AluJo SINE Alu 1 296 -16 220 378 0 0 chr1 129894177 129894251 -152299413 + MIR SINE MIR 70 143 -65 433 302 178 6 chr1 129894535 129894856 -152298808 + L2 LINE L2 2123 2498 -816 497 353 28 18 chr1 129894882 129895165 -152298499 + L2 LINE L2 2804 3089 -183 2172 122 3 0 chr1 129895230 129895534 -152298130 + AluSx SINE Alu 1 305 -7 280 162 29 73 chr1 129895724 129895792 -152297872 + L2 LINE L2 3244 3308 -5 598 235 77 110 chr1 129896155 129896491 -152297173 + L3 LINE CR1 1232 1556 -21 284 333 149 0 chr1 129897412 129897553 -152296111 + L3b LINE CR1 1388 1549 -34 273 250 69 0 chr1 129897727 129897799 -152295865 - L2 LINE L2 -50 3222 3146 512 303 92 35 chr1 129897809 129898212 -152295452 + L2 LINE L2 2022 2447 -867 714 275 48 13 chr1 129898228 129898383 -152295281 - Charlie8 DNA MER1_type -93 248 81 2268 110 3 0 chr1 129898383 129898684 -152294980 - AluSx SINE Alu -10 302 1 714 275 48 13 chr1 129898684 129898757 -152294907 - Charlie8 DNA MER1_type -260 81 12 2322 84 0 0 chr1 129899162 129899490 -152294174 + AluSx SINE Alu 1 328 0 2295 125 0 0 chr1 129900044 129900355 -152293309 + AluSx SINE Alu 1 311 -1 460 261 240 20 chr1 129901918 129902124 -152291540 + MIR SINE MIR 3 251 -11 222 227 0 0 chr1 129902160 129902204 -152291460 + (CATA)n Simple_repeat Simple_repeat 4 47 0 215 338 68 47 chr1 129902240 129902388 -152291276 - L2 LINE L2 -48 3224 3074 487 335 140 51 chr1 129902571 129902765 -152290899 - L2 LINE L2 -456 2858 2683 2286 91 0 3 chr1 129902765 129903089 -152290575 + AluSp SINE Alu 1 323 0 487 335 140 51 chr1 129903089 129904043 -152289621 - L2 LINE L2 -631 2683 1606 1078 8 0 15 chr1 129904094 129904227 -152289437 + (GAAA)n Simple_repeat Simple_repeat 4 134 0 281 118 20 0 chr1 129904254 129904305 -152289359 + GA-rich Low_complexity Low_complexity 1 52 0 340 264 314 8 chr1 129904362 129904604 -152289060 + L2 LINE L2 2949 3264 -8 1462 187 95 3 chr1 129905075 129905359 -152288305 + AluJb SINE Alu 1 310 -2 464 175 10 0 chr1 129905366 129905463 -152288201 + GA-rich Low_complexity Low_complexity 2 99 0 240 191 88 44 chr1 129905550 129905618 -152288046 + L2 LINE L2 3200 3270 -2 477 294 98 38 chr1 129906617 129906852 -152286812 - MIR SINE MIR -5 257 9 226 193 68 80 chr1 129907292 129907380 -152286284 - L2 LINE L2 -44 3228 3142 269 347 53 0 chr1 129907436 129907531 -152286133 + L3 LINE CR1 1477 1576 -1 184 154 292 15 chr1 129907937 129908002 -152285662 - L2 LINE L2 -1 3312 3230 227 182 0 0 chr1 129908368 129908412 -152285252 + (TG)n Simple_repeat Simple_repeat 2 45 0 232 273 61 0 chr1 129909117 129909183 -152284481 + MIR SINE MIR 37 106 -156 203 333 60 30 chr1 129909195 129909363 -152284301 - MIR SINE MIR -10 252 80 2525 53 0 10 chr1 129910510 129910811 -152282853 - AluY SINE Alu -12 299 2 286 261 45 11 chr1 129911638 129911726 -152281938 - L2 LINE L2 -25 3247 3157 220 307 105 18 chr1 129911715 129911829 -152281835 - L3 LINE CR1 -541 1036 913 * 1102 212 4 26 chr1 129912091 129912317 -152281347 + MER58A DNA MER1_type 1 221 -3 343 320 69 18 chr1 129912719 129912901 -152280763 - MIR SINE MIR -65 197 6 705 228 0 16 chr1 129913226 129913353 -152280311 - FLAM_A SINE Alu -8 125 1 544 240 1 89 chr1 129915902 129916031 -152277633 - L1M4 LINE L1 -1068 5078 4978 3595 149 19 41 chr1 129916031 129916721 -152276943 + L1MB3 LINE L1 5508 6182 -1 544 240 1 89 chr1 129916721 129916811 -152276853 - L1M4 LINE L1 -1168 4978 4882 1173 249 131 25 chr1 129916919 129917039 -152276625 + L1ME3 LINE L1 3803 3909 -2237 2025 145 0 31 chr1 129917039 129917356 -152276308 - AluSx SINE Alu -5 307 1 1173 249 131 25 chr1 129917356 129917942 -152275722 + L1ME3 LINE L1 3909 4588 -1558 959 175 34 51 chr1 129917942 129918170 -152275494 + MER20 DNA MER1_type 1 219 0 863 287 80 8 chr1 129918171 129918533 -152275131 + L1ME3 LINE L1 4582 4969 -1177 3476 190 52 48 chr1 129918547 129918623 -152275041 + L1ME3 LINE L1 5122 5196 -966 1614 176 3 30 chr1 129918623 129918919 -152274745 + AluJb SINE Alu 1 288 -24 3476 190 52 48 chr1 129918919 129919131 -152274533 + L1ME3 LINE L1 5196 5406 -756 1545 260 44 35 chr1 129919131 129919585 -152274079 - LTR16B LTR ERVL -2 462 5 3476 190 52 48 chr1 129919585 129920316 -152273348 + L1ME3 LINE L1 5406 6155 -7 231 293 81 20 chr1 129920470 129920569 -152273095 - L2 LINE L2 0 3272 3168 2221 160 106 106 chr1 129920677 129921197 -152272467 - MLT2B1 LTR ERVL 0 520 1 832 253 45 5 chr1 129922298 129922496 -152271168 + MIR SINE MIR 12 217 -45 1816 197 33 14 chr1 129922991 129923357 -152270307 - MLT1A2 LTR MaLR 0 374 2 2509 84 0 0 chr1 129924618 129924929 -152268735 + AluSx SINE Alu 2 312 0 1116 318 214 36 chr1 129924932 129925605 -152268059 + L3 LINE CR1 352 904 -673 1605 94 0 0 chr1 129925605 129925806 -152267858 + AluSg/x SINE Alu 100 300 -12 1116 318 214 36 chr1 129925806 129926172 -152267492 + L3 LINE CR1 904 1576 -1 715 305 130 38 chr1 129926161 129926728 -152266936 - L2 LINE L2 0 3313 2696 * 2232 124 3 0 chr1 129927044 129927350 -152266314 + AluSx SINE Alu 1 307 -5 239 220 64 55 chr1 129927731 129927840 -152265824 - L1ME4a LINE L1 -52 6069 5960 242 65 0 0 chr1 129927948 129927979 -152265685 - L1ME4a LINE L1 -243 5923 5893 1706 175 24 0 chr1 129928018 129928315 -152265349 + AluJb SINE Alu 2 305 -7 2829 182 80 62 chr1 129928494 129928808 -152264856 + L1ME1 LINE L1 5351 5658 -508 2305 119 0 0 chr1 129928808 129929119 -152264545 + AluSx SINE Alu 1 311 -1 2829 182 80 62 chr1 129929119 129929552 -152264112 + L1ME1 LINE L1 5658 6112 -54 2430 83 3 0 chr1 129929553 129929855 -152263809 + AluSx SINE Alu 1 303 -9 2104 106 3 58 chr1 129929859 129930188 -152263476 + AluSx SINE Alu 1 311 -1 2376 55 3 10 chr1 129930671 129930987 -152262677 + AluSx SINE Alu 1 314 0 393 246 41 36 chr1 129931108 129931275 -152262389 + MIR SINE MIR 48 218 -44 1507 184 0 75 chr1 129931729 129932049 -152261615 + AluJo SINE Alu 3 298 -14 1792 171 0 3 chr1 129932091 129932384 -152261280 - AluJb SINE Alu -20 292 1 584 190 7 29 chr1 129932569 129932706 -152260958 - L1MB8 LINE L1 -1 6177 6044 34 42 0 0 chr1 129932908 129932956 -152260708 + AT_rich Low_complexity Low_complexity 1 48 0 951 169 0 13 chr1 129933034 129933188 -152260476 - FRAM SINE Alu -21 155 4 21 0 0 0 chr1 129933195 129933216 -152260448 + AT_rich Low_complexity Low_complexity 1 21 0 237 209 182 45 chr1 129935711 129935821 -152257843 + MIR3 SINE MIR 71 195 -13 1273 137 0 10 chr1 129936085 129936282 -152257382 + AluJb SINE Alu 1 195 -117 22 35 0 0 chr1 129936874 129936903 -152256761 + AT_rich Low_complexity Low_complexity 1 29 0 1066 240 77 47 chr1 129938236 129938598 -152255066 - L1ME2 LINE L1 -23 6141 5769 1868 198 73 13 chr1 129938655 129939109 -152254555 - L1MD2 LINE L1 0 6359 5879 235 147 93 40 chr1 129939096 129939171 -152254493 - L1MD2 LINE L1 -815 5331 5253 * 1167 107 0 107 chr1 129939173 129939378 -152254286 + AluSx SINE Alu 1 183 -129 362 200 50 20 chr1 129939384 129939484 -152254180 - L1MD2 LINE L1 -1022 5124 5022 207 0 0 0 chr1 129939486 129939509 -152254155 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1584 163 35 39 chr1 129939513 129939796 -152253868 - AluSx SINE Alu -30 282 1 1039 219 115 66 chr1 129939822 129940320 -152253344 - L1MD2 LINE L1 -1112 5034 4471 2171 64 4 0 chr1 129940320 129940584 -152253080 + AluY SINE Alu 27 291 -20 1039 219 115 66 chr1 129940584 129940777 -152252887 - L1MD2 LINE L1 -1675 4471 4289 943 150 0 0 chr1 129940969 129941102 -152252562 - FLAM_C SINE Alu 0 133 1 219 211 96 106 chr1 129941167 129941271 -152252393 - MIR SINE MIR -128 134 32 2161 131 0 7 chr1 129941661 129941967 -152251697 - AluSx SINE Alu -8 304 1 2116 117 27 3 chr1 129942214 129942514 -152251150 + AluSx SINE Alu 1 307 -5 2318 87 0 0 chr1 129943233 129943522 -152250142 + L1PA5 LINE L1 5866 6154 0 331 353 63 17 chr1 129943848 129944148 -152249516 - L1M4 LINE L1 -894 5252 4939 495 296 98 25 chr1 129944501 129944704 -152248960 - MIR SINE MIR -18 244 27 185 250 0 45 chr1 129945066 129945110 -152248554 + MIR SINE MIR 204 245 -17 * 241 163 47 0 chr1 129945076 129945119 -152248545 + L2 LINE L2 3216 3260 -12 1650 179 134 0 chr1 129945187 129945494 -152248170 - MER7A DNA MER2_type 0 346 1 230 264 0 54 chr1 129945933 129946062 -152247602 + L1MC4a LINE L1 3066 3187 -2959 661 273 66 61 chr1 129946122 129946533 -152247131 + L1MC4a LINE L1 5648 6060 -1748 342 80 0 0 chr1 129946812 129946862 -152246802 - MADE1 DNA Mariner 0 80 31 1414 222 66 90 chr1 129947233 129947383 -152246281 - L1MC5 LINE L1 -112 7849 7697 2574 60 0 0 chr1 129947383 129947683 -152245981 - AluSc SINE Alu -9 300 1 1414 222 66 90 chr1 129947683 129947718 -152245946 - L1MC5 LINE L1 -264 7697 7663 833 211 45 6 chr1 129947718 129947874 -152245790 - FAM SINE Alu -13 162 1 1414 222 66 90 chr1 129947874 129948368 -152245296 - L1MC5 LINE L1 -298 7663 7185 995 144 89 0 chr1 129949511 129949759 -152243905 + L1PA16 LINE L1 5857 6163 -3 1720 130 85 60 chr1 129951844 129952175 -152241489 + MER44D DNA MER2_type 1 609 0 459 260 10 0 chr1 129952284 129952388 -152241276 + L2 LINE L2 3163 3267 -5 2189 124 7 0 chr1 129953914 129954220 -152239444 + AluSx SINE Alu 1 308 -4 715 217 96 0 chr1 129954621 129954787 -152238877 - MIR SINE MIR -2 260 79 546 285 130 58 chr1 129954792 129954965 -152238699 - LTR67 LTR ERVL -8 549 390 2267 96 0 7 chr1 129954965 129955268 -152238396 - AluSq SINE Alu -12 301 1 546 285 130 58 chr1 129955268 129955526 -152238138 - LTR67 LTR ERVL -167 390 87 2769 153 102 40 chr1 129955602 129956131 -152237533 - MER68 LTR ERV1 0 562 1 1797 151 17 7 chr1 129957176 129957467 -152236197 - AluJb SINE Alu -18 294 1 574 221 30 15 chr1 129957666 129957797 -152235867 + FLAM_A SINE Alu 1 133 0 2590 63 0 0 chr1 129957915 129958218 -152235446 + AluY SINE Alu 1 303 -8 707 164 30 45 chr1 129958784 129958918 -152234746 + FLAM_C SINE Alu 2 133 -10 1840 144 4 0 chr1 129960226 129960489 -152233175 + AluSx SINE Alu 1 264 -48 184 102 41 41 chr1 129960598 129960647 -152233017 + T-rich Low_complexity Low_complexity 3 51 0 25 31 0 0 chr1 129960686 129960718 -152232946 + AT_rich Low_complexity Low_complexity 1 32 0 294 29 0 0 chr1 129961202 129961237 -152232427 + (TG)n Simple_repeat Simple_repeat 2 36 0 2219 104 3 3 chr1 129962250 129962547 -152231117 - AluSx SINE Alu -15 297 1 225 317 18 78 chr1 129962966 129963133 -152230531 + L2 LINE L2 3116 3272 0 2433 57 0 3 chr1 129963210 129963508 -152230156 + AluY SINE Alu 1 297 -14 257 226 24 12 chr1 129964146 129964230 -152229434 + (TA)n Simple_repeat Simple_repeat 1 85 0 1830 173 0 10 chr1 129964359 129964666 -152228998 + AluJo SINE Alu 1 304 -8 364 256 11 0 chr1 129969142 129969232 -152224432 - MIR3 SINE MIR -10 198 108 385 346 88 3 chr1 129969800 129970213 -152223451 - L2 LINE L2 -195 3077 2593 26 30 0 0 chr1 129970670 129970703 -152222961 + AT_rich Low_complexity Low_complexity 1 33 0 2366 99 0 0 chr1 129971329 129971631 -152222033 - AluSq SINE Alu -11 302 1 326 262 27 67 chr1 129973259 129973408 -152220256 - MIR3 SINE MIR -5 203 61 578 204 70 32 chr1 129973578 129973735 -152219929 - MER58C DNA MER1_type -44 171 9 1652 187 194 7 chr1 129974136 129974579 -152219085 - L1MC4 LINE L1 -1 8041 7516 411 323 24 40 chr1 129974582 129974830 -152218834 + L2 LINE L2 1687 1930 -1384 182 330 60 10 chr1 129974902 129975002 -152218662 + L2 LINE L2 2228 2332 -982 400 313 111 40 chr1 129975546 129975897 -152217767 + L2 LINE L2 2897 3272 0 2065 151 0 0 chr1 129976813 129977112 -152216552 + AluJo SINE Alu 1 299 -13 278 214 62 14 chr1 129977655 129977800 -152215864 + (CAATA)n Simple_repeat Simple_repeat 4 155 0 913 233 65 110 chr1 129977813 129978276 -152215388 + MLT1J2 LTR MaLR 1 442 -8 205 325 16 65 chr1 129978546 129978624 -152215040 + MIR SINE MIR 28 99 -163 2563 64 0 16 chr1 129978624 129978938 -152214726 + AluSc SINE Alu 1 309 0 205 325 16 65 chr1 129978938 129978982 -152214682 + MIR SINE MIR 99 144 -118 265 240 106 39 chr1 129979137 129979241 -152214423 + MIR SINE MIR 57 167 -95 1940 132 4 0 chr1 129980387 129980659 -152213005 + AluSx SINE Alu 1 273 -39 399 256 30 23 chr1 129981417 129981550 -152212114 - L2 LINE L2 -8 3305 3172 722 258 163 22 chr1 129982684 129982834 -152210830 - L2 LINE L2 -1 3312 3184 1478 143 52 52 chr1 129982834 129983121 -152210543 + AluJb SINE Alu 21 307 -5 722 258 163 22 chr1 129983121 129983519 -152210145 - L2 LINE L2 -129 3184 2687 796 252 50 0 chr1 129983528 129983750 -152209914 - L2 LINE L2 -1358 1956 1724 1800 157 64 9 chr1 129983750 129984096 -152209568 + MLT1B LTR MaLR 30 390 0 1358 258 207 5 chr1 129984160 129984726 -152208938 - L2 LINE L2 -1695 1619 940 184 288 17 34 chr1 129986099 129986158 -152207506 - L2 LINE L2 -48 3224 3167 310 293 20 73 chr1 129986188 129986338 -152207326 - MIR SINE MIR -98 164 23 2406 90 0 7 chr1 129986901 129987211 -152206453 - AluSx SINE Alu -4 308 1 332 243 192 69 chr1 129987554 129987717 -152205947 - MIR SINE MIR -62 146 7 1963 129 3 23 chr1 129989996 129990298 -152203366 + AluJo SINE Alu 1 296 -16 803 172 97 0 chr1 129992074 129992219 -152201445 + FRAM SINE Alu 4 162 -14 2244 105 3 25 chr1 129994561 129994875 -152198789 - AluSg SINE Alu -3 307 1 1222 280 109 45 chr1 129995646 129995841 -152197823 + L2 LINE L2 301 482 -2832 2282 104 0 10 chr1 129995841 129996148 -152197516 - AluSg SINE Alu -6 304 1 1187 194 14 5 chr1 129996154 129996370 -152197294 + MER20 DNA MER1_type 2 219 0 1222 280 109 45 chr1 129996370 129996816 -152196848 + L2 LINE L2 486 991 -2323 256 214 0 24 chr1 129998345 129998429 -152195235 + (TA)n Simple_repeat Simple_repeat 1 82 0 686 266 60 37 chr1 129999116 129999379 -152194285 + L2 LINE L2 1711 1985 -1329 1974 158 3 10 chr1 129999379 129999689 -152193975 - AluJb SINE Alu -4 308 1 686 266 60 37 chr1 129999689 129999775 -152193889 + L2 LINE L2 1985 2068 -1246 718 128 0 0 chr1 129999806 129999908 -152193756 - AluSp SINE Alu -205 108 7 721 94 8 8 chr1 129999914 130000031 -152193633 + (TTC)n Simple_repeat Simple_repeat 2 118 0 1020 244 74 57 chr1 130000354 130000455 -152193209 - L2 LINE L2 -50 3263 3165 2060 128 55 0 chr1 130000455 130000744 -152192920 + AluSx SINE Alu 2 306 -6 1020 244 74 57 chr1 130000744 130001060 -152192604 - L2 LINE L2 -148 3165 2839 340 312 41 130 chr1 130001231 130001593 -152192071 + L2 LINE L2 2943 3272 0 386 226 87 9 chr1 130002797 130002912 -152190752 + L2 LINE L2 3186 3309 -4 * 407 309 0 0 chr1 130002910 130003020 -152190644 - MIR SINE MIR -71 137 28 322 313 114 0 chr1 130003471 130003602 -152190062 + MER115 DNA AcHobo 283 428 -265 266 211 0 0 chr1 130003616 130003668 -152189996 + Zaphod DNA AcHobo 3980 4031 0 224 219 24 73 chr1 130003705 130003787 -152189877 - MIR SINE MIR -1 261 184 287 49 24 0 chr1 130003907 130003948 -152189716 + (TG)n Simple_repeat Simple_repeat 2 43 0 27 54 0 40 chr1 130004076 130004150 -152189514 + AT_rich Low_complexity Low_complexity 1 71 0 30 45 0 0 chr1 130004328 130004372 -152189292 + AT_rich Low_complexity Low_complexity 1 44 0 2116 122 14 0 chr1 130004497 130004783 -152188881 - AluSx SINE Alu -22 290 1 800 149 0 19 chr1 130005831 130005992 -152187672 + MER33 DNA MER1_type 43 200 -124 325 54 54 54 chr1 130006006 130006062 -152187602 - L1MC1 LINE L1 -1 6332 6277 282 268 0 28 chr1 130006206 130006277 -152187387 + MER106A DNA MER1_type 5 73 -163 1052 166 0 0 chr1 130006290 130006447 -152187217 - FRAM SINE Alu -20 156 1 427 176 221 15 chr1 130006447 130006497 -152187167 + MER106B DNA MER1_type 896 934 -125 590 60 12 0 chr1 130006497 130006580 -152187084 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 427 176 221 15 chr1 130006580 130006665 -152186999 + MER106B DNA MER1_type 934 1059 0 2294 119 0 0 chr1 130006849 130007192 -152186472 + AluSq SINE Alu 1 343 0 387 105 0 0 chr1 130007247 130007304 -152186360 + (TG)n Simple_repeat Simple_repeat 2 58 0 1228 92 9 116 chr1 130007398 130007725 -152185939 + AluSg SINE Alu 1 292 -18 233 317 23 130 chr1 130007748 130008180 -152185484 + L2 LINE L2 2849 3234 -38 202 29 57 0 chr1 130008638 130008673 -152184991 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 232 186 68 0 chr1 130008699 130008758 -152184906 - MIR SINE MIR -71 191 129 2342 81 3 7 chr1 130009579 130009876 -152183788 + AluSq SINE Alu 1 296 -17 306 0 0 0 chr1 130010619 130010653 -152183011 + (CA)n Simple_repeat Simple_repeat 2 35 0 861 201 3 64 chr1 130011158 130011375 -152182289 + MLT1B LTR MaLR 1 193 -181 1169 153 41 0 chr1 130011858 130012054 -152181610 + MLT1B LTR MaLR 187 390 0 278 240 0 0 chr1 130012056 130012131 -152181533 - MIR SINE MIR -37 225 151 23 33 0 0 chr1 130012590 130012620 -152181044 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr1 130012723 130012751 -152180913 + AT_rich Low_complexity Low_complexity 1 28 0 337 315 69 0 chr1 130013402 130013532 -152180132 + MIR SINE MIR 20 158 -104 1780 158 14 34 chr1 130013729 130014026 -152179638 - AluJo SINE Alu -21 291 1 210 352 19 9 chr1 130016312 130016417 -152177247 + MIR3 SINE MIR 102 207 -1 277 188 0 0 chr1 130016635 130016683 -152176981 - L2 LINE L2 -3 3269 3222 811 200 59 64 chr1 130017364 130017584 -152176080 - MER20 DNA MER1_type 0 219 1 1878 148 7 10 chr1 130018816 130019106 -152174558 - AluJb SINE Alu -23 289 1 1071 180 20 15 chr1 130021456 130021656 -152172008 + MIR SINE MIR 58 258 -4 211 390 20 0 chr1 130021692 130021792 -152171872 + L2 LINE L2 2207 2308 -1006 267 379 58 52 chr1 130022364 130022712 -152170952 + L2 LINE L2 2297 2646 -668 285 284 0 12 chr1 130022852 130022933 -152170731 + L2 LINE L2 3232 3311 -2 3070 158 36 18 chr1 130023782 130024332 -152169332 - L1MB2 LINE L1 -2 6169 5610 3018 104 250 0 chr1 130024388 130024876 -152168788 - LTR12 LTR ERV1 -73 641 32 1621 156 32 53 chr1 130024876 130025254 -152168410 - L1MB2 LINE L1 -528 5643 5274 699 203 37 11 chr1 130025354 130025541 -152168123 - L1M4 LINE L1 -758 5388 5197 194 314 0 57 chr1 130025646 130025716 -152167948 - L2 LINE L2 0 3272 3207 350 222 121 0 chr1 130026171 130026270 -152167394 - MER117 DNA MER1_type -86 111 1 22 0 0 0 chr1 130026841 130026863 -152166801 + AT_rich Low_complexity Low_complexity 1 22 0 228 275 110 46 chr1 130027453 130027562 -152166102 - L2 LINE L2 -19 3294 3179 303 180 200 20 chr1 130027634 130027734 -152165930 - MIR SINE MIR -6 256 139 2151 170 20 153 chr1 130027740 130027881 -152165783 - L1MD3 LINE L1 -5 7990 7832 2368 100 3 0 chr1 130027881 130028192 -152165472 + AluSp SINE Alu 1 312 -1 2151 170 20 153 chr1 130028192 130028690 -152164974 - L1MD3 LINE L1 -163 7832 7436 248 230 10 90 chr1 130028690 130028790 -152164874 - MLT1F1 LTR MaLR -452 115 24 1029 139 108 5 chr1 130028790 130028984 -152164680 - L1MC3 LINE L1 -700 7085 6872 257 122 122 0 chr1 130028984 130029033 -152164631 - MIR SINE MIR -68 140 86 259 317 0 76 chr1 130029065 130029210 -152164454 + L2 LINE L2 2926 3059 -213 215 324 114 19 chr1 130029350 130029455 -152164209 + L2 LINE L2 3150 3264 -8 207 0 0 0 chr1 130030472 130030495 -152163169 + (TA)n Simple_repeat Simple_repeat 2 24 0 369 267 80 102 chr1 130030544 130030685 -152162979 + MIR SINE MIR 18 161 -101 2720 91 11 6 chr1 130030685 130031038 -152162626 - THE1A LTR MaLR 0 355 1 12424 89 23 0 chr1 130031038 130032583 -152161081 - THE1A-int LTR MaLR 0 1580 1 2546 110 8 11 chr1 130032583 130032939 -152160725 - THE1A LTR MaLR 0 355 1 369 267 80 102 chr1 130032939 130032971 -152160693 + MIR SINE MIR 158 189 -73 182 356 0 0 chr1 130033125 130033198 -152160466 - MIR SINE MIR -113 149 77 208 250 0 0 chr1 130033933 130033981 -152159683 + MIR SINE MIR 215 262 0 207 0 0 0 chr1 130034100 130034123 -152159541 + (TTG)n Simple_repeat Simple_repeat 2 24 0 229 320 55 107 chr1 130034647 130035013 -152158651 + L2 LINE L2 2926 3272 0 230 208 14 83 chr1 130035589 130035661 -152158003 + L2 LINE L2 3206 3272 0 741 270 56 28 chr1 130036587 130036839 -152156825 + MIR SINE MIR 2 260 -2 369 319 36 24 chr1 130036946 130037112 -152156552 - MIR SINE MIR -93 169 2 2664 117 3 5 chr1 130037366 130037741 -152155923 + LTR57 LTR ERVL 1 374 -37 228 240 364 8 chr1 130037982 130038103 -152155561 - MIR SINE MIR -70 192 29 291 343 155 23 chr1 130038509 130038728 -152154936 + MIR SINE MIR 4 251 -11 2734 143 9 41 chr1 130038733 130039173 -152154491 + MSTB LTR MaLR 1 426 0 208 227 0 0 chr1 130039472 130039516 -152154148 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1366 80 0 11 chr1 130039852 130040028 -152153636 + AluY SINE Alu 1 174 -137 234 91 0 0 chr1 130040034 130040067 -152153597 + (A)n Simple_repeat Simple_repeat 1 33 0 251 241 26 26 chr1 130040177 130040197 -152153467 + (TA)n Simple_repeat Simple_repeat 2 21 -96 2058 128 7 3 chr1 130040197 130040487 -152153177 + AluSx SINE Alu 9 299 -13 251 241 26 26 chr1 130040487 130040582 -152153082 + (TA)n Simple_repeat Simple_repeat 20 117 0 874 235 48 37 chr1 130040585 130040879 -152152785 - L1ME3A LINE L1 -12 6158 5862 548 214 24 0 chr1 130040924 130041050 -152152614 + L1ME LINE L1 5469 5597 -573 285 233 68 34 chr1 130041123 130041269 -152152395 + L1M4 LINE L1 3065 3215 -2931 300 221 0 0 chr1 130041314 130041391 -152152273 + GA-rich Low_complexity Low_complexity 4 80 0 1340 276 52 18 chr1 130041605 130042120 -152151544 + L1M4 LINE L1 4802 5334 -812 831 162 7 15 chr1 130042137 130042273 -152151391 - AluJo SINE Alu -176 136 2 191 286 51 79 chr1 130042923 130042992 -152150672 - MIR SINE MIR -70 192 123 2059 136 0 7 chr1 130042992 130043300 -152150364 + AluJb SINE Alu 3 308 -4 191 286 51 79 chr1 130043300 130043408 -152150256 - MIR SINE MIR -139 123 20 293 221 97 26 chr1 130044093 130044206 -152149458 - L1ME4a LINE L1 -16 6105 5985 6153 50 6 1 chr1 130044220 130044935 -152148729 - L1PA8 LINE L1 -2 6170 5453 657 248 66 49 chr1 130045013 130045239 -152148425 - MIR SINE MIR -11 251 22 409 183 0 2 chr1 130046075 130046142 -152147522 + MLT1C LTR MaLR 30 95 -295 266 189 0 19 chr1 130046142 130046195 -152147469 + LTR30 LTR ERV1 1 52 -670 1572 70 280 198 chr1 130046195 130046684 -152146980 + LTR12 LTR ERV1 53 581 -133 1733 171 101 20 chr1 130046685 130046790 -152146874 + MLT1C LTR MaLR 94 189 -278 225 0 0 0 chr1 130046790 130046815 -152146849 + (CA)n Simple_repeat Simple_repeat 2 26 0 1733 171 101 20 chr1 130046815 130047055 -152146609 + MLT1C LTR MaLR 189 467 0 447 351 35 17 chr1 130047715 130047889 -152145775 - L2 LINE L2 -6 3266 3090 1924 84 0 0 chr1 130047909 130048146 -152145518 + AluSq SINE Alu 1 237 -76 2448 78 3 0 chr1 130049198 130049494 -152144170 - AluSx SINE Alu -15 297 1 575 268 44 6 chr1 130049596 130049779 -152143885 - MIR SINE MIR -70 192 3 2228 128 0 0 chr1 130050240 130050552 -152143112 + AluSx SINE Alu 1 312 0 459 281 7 37 chr1 130051200 130051335 -152142329 + MER117 DNA MER1_type 4 134 -63 1272 160 46 104 chr1 130051335 130051642 -152142022 - AluJb SINE Alu -3 309 21 2351 101 0 3 chr1 130051670 130051976 -152141688 - AluSx SINE Alu -2 310 6 1766 184 13 7 chr1 130052003 130052313 -152141351 - AluJo SINE Alu 0 312 1 598 298 108 41 chr1 130052493 130052543 -152141121 + L3 LINE CR1 1083 1128 -449 833 220 147 0 chr1 130052543 130052734 -152140930 - MER20 DNA MER1_type 0 219 1 598 298 108 41 chr1 130052734 130052978 -152140686 + L3 LINE CR1 1128 1397 -180 494 295 55 16 chr1 130053235 130053418 -152140246 - MIR SINE MIR -70 192 3 920 165 0 0 chr1 130054558 130054691 -152138973 + FLAM_C SINE Alu 1 133 0 195 271 0 0 chr1 130056673 130056721 -152136943 + L2 LINE L2 3222 3269 -3 310 293 80 87 chr1 130057138 130057438 -152136226 + L1MEd LINE L1 11 308 -5811 4428 112 8 18 chr1 130058864 130059480 -152134184 + MER4B LTR ERV1 1 610 0 715 138 52 17 chr1 130060165 130060281 -152133383 + FLAM_C SINE Alu 3 122 -21 2055 113 3 73 chr1 130060424 130060752 -152132912 + AluJb SINE Alu 1 305 -7 186 412 0 24 chr1 130061035 130061120 -152132544 + L2 LINE L2 3104 3186 -86 222 206 0 0 chr1 130061242 130061315 -152132349 + A-rich Low_complexity Low_complexity 1 73 0 228 170 0 0 chr1 130061633 130061686 -152131978 + GA-rich Low_complexity Low_complexity 2 54 0 1686 262 64 25 chr1 130063180 130063756 -152129908 + L1M3a LINE L1 1533 2312 -5174 * 2855 263 27 11 chr1 130063738 130064791 -152128873 + L1M3a LINE L1 302 1393 -4572 1436 164 3 88 chr1 130064791 130064942 -152128722 + AluJo SINE Alu 1 115 -197 2134 102 7 0 chr1 130064942 130065227 -152128437 + AluSp SINE Alu 23 309 -4 1436 164 3 88 chr1 130065227 130065380 -152128284 + AluJo SINE Alu 115 279 -33 2260 254 57 28 chr1 130065405 130066321 -152127343 + L1M3a LINE L1 2586 3571 -3994 1516 171 64 64 chr1 130066321 130066665 -152126999 - MER2 DNA MER2_type 0 344 1 2260 254 57 28 chr1 130066665 130067211 -152126453 + L1M3a LINE L1 3571 4100 -3465 * 6024 155 17 19 chr1 130067206 130068403 -152125261 + L1MA9 LINE L1 4905 6103 -209 1995 118 18 0 chr1 130068403 130068722 -152124942 + AluSx SINE Alu 1 324 0 6024 155 17 19 chr1 130068722 130068932 -152124732 + L1MA9 LINE L1 6103 6312 0 978 218 85 93 chr1 130069088 130069292 -152124372 + L1ME4a LINE L1 5527 5731 -390 1481 216 0 4 chr1 130069292 130069570 -152124094 + AluJo SINE Alu 5 281 -31 978 218 85 93 chr1 130069570 130069823 -152123841 + L1ME4a LINE L1 5731 5980 -141 189 0 0 0 chr1 130069823 130069844 -152123820 + (GA)n Simple_repeat Simple_repeat 2 22 0 978 218 85 93 chr1 130069844 130069973 -152123691 + L1ME4a LINE L1 5980 6109 -12 2424 99 12 79 chr1 130070808 130071212 -152122452 + MER51B LTR ERV1 1 377 0 328 214 61 20 chr1 130072616 130072714 -152120950 + MER103 DNA DNA 27 128 -38 2275 116 0 0 chr1 130072742 130073045 -152120619 - AluSx SINE Alu -9 303 1 2340 97 0 3 chr1 130073053 130073353 -152120311 - AluSc SINE Alu -10 299 1 1392 208 19 8 chr1 130073539 130073803 -152119861 + AluJo SINE Alu 1 267 -45 1231 157 63 100 chr1 130074199 130074498 -152119166 - AluJb SINE Alu -22 290 3 549 236 48 63 chr1 130075744 130076015 -152117649 - L2 LINE L2 -1227 2087 1821 927 190 41 0 chr1 130076023 130076218 -152117446 - MIR SINE MIR -48 214 12 722 257 91 36 chr1 130076267 130076741 -152116923 - L2 LINE L2 -1520 1794 1295 714 181 34 13 chr1 130077217 130077366 -152116298 - MER5A DNA MER1_type -28 161 10 858 239 18 22 chr1 130077608 130077834 -152115830 - MIR SINE MIR -5 257 33 2357 102 0 0 chr1 130078004 130078307 -152115357 + AluY SINE Alu 1 303 -8 305 222 0 91 chr1 130078425 130078524 -152115140 + L1MC4 LINE L1 6614 6703 -1339 269 115 0 19 chr1 130078525 130078577 -152115087 + (TA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 130078577 130078597 -152115067 + (GA)n Simple_repeat Simple_repeat 2 21 0 1841 141 7 32 chr1 130078599 130078882 -152114782 - AluJb SINE Alu -36 276 1 186 297 135 0 chr1 130079172 130079246 -152114418 + MIR SINE MIR 67 150 -112 377 250 171 0 chr1 130079809 130079961 -152113703 - MIR SINE MIR -3 259 82 237 295 80 45 chr1 130080009 130080233 -152113431 - L2 LINE L2 -78 3194 2963 208 345 78 9 chr1 130080810 130081129 -152112535 + L2 LINE L2 2034 2374 -940 344 310 101 70 chr1 130081558 130082003 -152111661 + L2 LINE L2 2809 3267 -5 203 179 0 26 chr1 130083333 130083372 -152110292 + CT-rich Low_complexity Low_complexity 3 40 0 288 0 0 0 chr1 130083632 130083664 -152110000 + (CAG)n Simple_repeat Simple_repeat 1 32 0 320 257 50 45 chr1 130084601 130084780 -152108884 + L3 LINE CR1 1330 1509 -68 204 97 0 0 chr1 130085120 130085151 -152108513 + (TC)n Simple_repeat Simple_repeat 1 31 0 213 326 56 22 chr1 130085390 130085479 -152108185 + MIR SINE MIR 31 122 -140 1169 188 15 125 chr1 130085702 130085762 -152107902 + AluJo SINE Alu 2 67 -235 2108 125 7 14 chr1 130085762 130086058 -152107606 - AluSx SINE Alu -18 294 1 1169 188 15 125 chr1 130086058 130086332 -152107332 + AluJo SINE Alu 67 299 -3 2342 101 67 45 chr1 130087182 130087393 -152106271 - MLT1B LTR MaLR -4 386 162 2269 79 0 4 chr1 130087393 130087670 -152105994 - AluSq SINE Alu -15 298 23 2342 101 67 45 chr1 130087670 130087834 -152105830 - MLT1B LTR MaLR -228 162 3 329 290 168 62 chr1 130088062 130088479 -152105185 + L2 LINE L2 2809 3269 -3 307 351 54 14 chr1 130088510 130088658 -152105006 + L2 LINE L2 3117 3270 -2 2843 10 0 3 chr1 130088899 130089206 -152104458 - AluYa5 SINE Alu -5 306 1 26 0 0 0 chr1 130089210 130089236 -152104428 + AT_rich Low_complexity Low_complexity 1 26 0 1256 216 2 100 chr1 130089338 130089746 -152103918 - LTR28 LTR ERV1 -84 936 503 250 261 87 0 chr1 130089754 130089823 -152103841 + LTR27 LTR ERV1 560 634 -2 2132 114 3 0 chr1 130089828 130090126 -152103538 - LTR8A LTR ERV1 -428 299 1 1746 152 3 38 chr1 130090589 130090879 -152102785 - AluSx SINE Alu -19 293 14 519 173 0 55 chr1 130090902 130091012 -152102652 - MLT1B LTR MaLR -135 255 152 44477 45 1 3 chr1 130091015 130097185 -152096479 + L1PA4 LINE L1 2 6155 0 747 121 12 124 chr1 130097192 130097276 -152096388 - MLT1B LTR MaLR -227 163 71 2332 114 0 0 chr1 130097276 130097575 -152096089 + AluSg SINE Alu 1 299 -11 747 121 12 124 chr1 130097575 130097655 -152096009 - MLT1B LTR MaLR -319 71 27 1584 189 30 57 chr1 130097655 130097805 -152095859 + MLT1A1 LTR MaLR 5 158 -207 2098 129 3 7 chr1 130097805 130098115 -152095549 + AluSq SINE Alu 1 309 -4 1584 189 30 57 chr1 130098115 130098335 -152095329 + MLT1A1 LTR MaLR 158 365 0 747 121 12 124 chr1 130098335 130098354 -152095310 - MLT1B LTR MaLR -363 27 7 1127 294 20 14 chr1 130098653 130098997 -152094667 + MLT1I LTR MaLR 60 405 -4 226 284 69 0 chr1 130099059 130099175 -152094489 + L1P LINE L1 4976 5099 -1047 241 175 105 35 chr1 130099319 130099376 -152094288 + MLT1H LTR MaLR 1 61 -488 344 270 87 0 chr1 130099526 130099641 -152094023 + MLT1G1 LTR MaLR 466 590 -5 1763 204 108 136 chr1 130099663 130100241 -152093423 + L1MC4a LINE L1 5218 5810 -336 2492 93 3 0 chr1 130100241 130100552 -152093112 + AluSp SINE Alu 1 312 -1 1763 204 108 136 chr1 130100552 130100770 -152092894 + L1MC4a LINE L1 5810 5202 -944 261 0 0 0 chr1 130100770 130100799 -152092865 + (CA)n Simple_repeat Simple_repeat 2 30 0 1763 204 108 136 chr1 130100799 130100997 -152092667 + L1MC4a LINE L1 5201 5403 -743 250 264 154 11 chr1 130101049 130101140 -152092524 - MIR SINE MIR -130 132 29 221 265 20 78 chr1 130101142 130101244 -152092420 + MIR SINE MIR 87 182 -80 363 273 108 23 chr1 130101356 130101532 -152092132 - MIR SINE MIR -25 237 47 2476 93 0 0 chr1 130101683 130101995 -152091669 - AluSx SINE Alu 0 312 1 207 280 0 40 chr1 130102196 130102271 -152091393 + MIR SINE MIR 185 256 -6 189 250 0 0 chr1 130102970 130103030 -152090634 + GA-rich Low_complexity Low_complexity 1 60 0 318 211 170 48 chr1 130103673 130103820 -152089844 + L2 LINE L2 2665 2829 -485 2374 141 64 5 chr1 130104308 130104712 -152088952 + MSTA LTR MaLR 1 428 0 406 266 70 0 chr1 130105815 130105943 -152087721 + MIR3 SINE MIR 6 142 -66 182 284 68 0 chr1 130106603 130106677 -152086987 + L2 LINE L2 3204 3282 -31 1374 258 80 8 chr1 130106860 130107224 -152086440 + LTR16A LTR ERVL 61 450 0 488 278 118 30 chr1 130107224 130107407 -152086257 - L2 LINE L2 -27 3286 3121 2783 73 0 56 chr1 130107407 130107629 -152086035 - THE1C LTR MaLR -2 373 181 2366 99 0 3 chr1 130107629 130107931 -152085733 + AluSq SINE Alu 1 301 -12 2783 73 0 56 chr1 130107931 130108103 -152085561 - THE1C LTR MaLR -194 181 1 488 278 118 30 chr1 130108103 130108323 -152085341 - L2 LINE L2 -192 3121 2792 24 32 0 0 chr1 130108378 130108409 -152085255 + AT_rich Low_complexity Low_complexity 1 31 0 904 256 248 6 chr1 130108490 130109014 -152084650 - L2 LINE L2 -981 2333 1683 790 274 98 6 chr1 130109234 130109562 -152084102 - L2 LINE L2 -1641 1673 1316 268 232 189 11 chr1 130109570 130109665 -152083999 - L2 LINE L2 -13 3259 3148 * 344 209 76 48 chr1 130109661 130109766 -152083898 - L2 LINE L2 -2020 1294 1187 2266 96 7 0 chr1 130109892 130110184 -152083480 + AluSp SINE Alu 1 294 -19 205 370 51 23 chr1 130110229 130110445 -152083219 + L2 LINE L2 2553 2774 -540 2248 92 11 0 chr1 130110473 130110754 -152082910 - AluSx SINE Alu -28 284 1 207 0 0 0 chr1 130111266 130111289 -152082375 + (A)n Simple_repeat Simple_repeat 1 23 0 568 144 59 25 chr1 130112189 130112307 -152081357 + L1M4 LINE L1 5580 5701 -473 2451 75 7 3 chr1 130112322 130112627 -152081037 + AluY SINE Alu 1 306 -5 872 144 40 0 chr1 130113343 130113516 -152080148 - Charlie5 DNA MER1_type 0 2624 2445 203 318 30 0 chr1 130114065 130114131 -152079533 - L2 LINE L2 -3 3269 3202 819 245 83 97 chr1 130114246 130115057 -152078607 + L2 LINE L2 2477 3282 -31 457 217 109 40 chr1 130115209 130115384 -152078280 + MER5A DNA MER1_type 1 187 -2 195 284 27 14 chr1 130115580 130115654 -152078010 + L2 LINE L2 2691 2765 -549 247 267 176 23 chr1 130115826 130115957 -152077707 + L2 LINE L2 3161 3311 -2 1792 174 17 10 chr1 130116631 130116925 -152076739 - 7SLRNA srpRNA srpRNA -22 298 3 188 310 17 0 chr1 130117402 130117460 -152076204 - L3 LINE CR1 -2 1575 1517 418 395 62 14 chr1 130118390 130118679 -152074985 - L2 LINE L2 -13 3259 2957 23 0 0 0 chr1 130119334 130119357 -152074307 + AT_rich Low_complexity Low_complexity 1 23 0 784 206 127 82 chr1 130119361 130119716 -152073948 - L1ME1 LINE L1 -5 6161 5791 729 280 93 32 chr1 130120210 130120955 -152072709 + L1MC/D LINE L1 4795 5595 -759 1962 166 0 3 chr1 130120967 130121274 -152072390 + AluJb SINE Alu 1 306 -6 328 337 116 12 chr1 130122528 130122700 -152070964 - L2 LINE L2 -2 3270 3081 30 45 0 0 chr1 130122847 130122891 -152070773 + AT_rich Low_complexity Low_complexity 1 44 0 528 268 7 7 chr1 130122965 130123103 -152070561 + MIR SINE MIR 17 154 -108 593 332 12 33 chr1 130123182 130123426 -152070238 + MIR SINE MIR 23 261 -1 371 251 73 31 chr1 130123802 130123979 -152069685 - L1ME3A LINE L1 -312 5809 5661 748 304 25 4 chr1 130124144 130124387 -152069277 + MIR SINE MIR 5 252 -10 704 262 101 10 chr1 130124753 130125113 -152068551 + L2 LINE L2 2678 3059 -254 312 247 0 0 chr1 130125360 130125437 -152068227 + L2 LINE L2 3236 3312 -1 779 209 89 0 chr1 130125800 130125958 -152067706 + MER45A DNA AcHobo 1 172 -6 211 128 0 64 chr1 130126330 130126377 -152067287 + (TTTTTG)n Simple_repeat Simple_repeat 6 49 0 23 0 0 0 chr1 130126673 130126696 -152066968 + AT_rich Low_complexity Low_complexity 1 23 0 44354 47 2 3 chr1 130126696 130132843 -152060821 - L1PA4 LINE L1 -11 6144 1 10376 132 72 10 chr1 130132838 130134579 -152059085 - L1PBa LINE L1 -3753 3109 1478 * 3708 62 8 8 chr1 130134579 130135061 -152058603 + L1PA5 LINE L1 5673 6154 0 10376 132 72 10 chr1 130135061 130135179 -152058485 - L1PBa LINE L1 -5384 1478 1369 2248 113 48 28 chr1 130135179 130135534 -152058130 - THE1B LTR MaLR 0 364 3 12185 88 3 0 chr1 130135536 130137111 -152056553 - THE1B-int LTR MaLR 0 1580 1 2112 79 96 68 chr1 130137111 130137465 -152056199 - THE1B LTR MaLR 0 364 1 10376 132 72 10 chr1 130137465 130138392 -152055272 - L1PBa LINE L1 -5492 1370 1 444 274 41 31 chr1 130138430 130138748 -152054916 - L1M4 LINE L1 -2835 3311 2991 583 270 112 35 chr1 130138754 130139217 -152054447 - L1M4 LINE L1 -3192 2954 2456 270 0 0 0 chr1 130139219 130139249 -152054415 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 297 0 0 0 chr1 130139248 130139281 -152054383 + (CA)n Simple_repeat Simple_repeat 1 33 0 871 313 94 13 chr1 130139374 130139857 -152053807 + L2 LINE L2 2776 3297 -16 183 100 0 0 chr1 130139861 130139891 -152053773 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 244 370 43 27 chr1 130140398 130140582 -152053082 + MIR SINE MIR 70 256 -6 198 324 108 0 chr1 130141357 130141431 -152052233 + MIR SINE MIR 19 100 -162 350 222 56 11 chr1 130141880 130141970 -152051694 + MIR SINE MIR 168 261 -1 300 367 83 0 chr1 130142033 130142142 -152051522 + MER91A DNA MER1_type 36 153 -43 515 107 10 97 chr1 130143662 130143765 -152049899 - MER53 DNA DNA 0 189 96 1997 237 43 34 chr1 130144609 130145166 -152048498 - MER74B LTR ERVL -5 617 56 240 282 14 0 chr1 130145183 130145254 -152048410 - MIR SINE MIR -107 101 30 532 216 18 9 chr1 130145331 130145442 -152048222 + MER81 DNA DNA 2 113 -1 191 222 19 19 chr1 130145815 130145869 -152047795 + L2 LINE L2 3165 3218 -95 496 229 12 94 chr1 130145883 130146053 -152047611 - L2 LINE L2 0 3313 3158 968 205 5 65 chr1 130146329 130146544 -152047120 + MER20 DNA MER1_type 1 202 -17 591 316 88 9 chr1 130146589 130146909 -152046755 - L2 LINE L2 -548 2766 2422 7374 48 2 0 chr1 130147289 130148842 -152044822 + L1PA4 LINE L1 4590 6144 -11 23 0 0 0 chr1 130148842 130148865 -152044799 + AT_rich Low_complexity Low_complexity 1 23 0 211 128 0 64 chr1 130149161 130149208 -152044456 + (CAAAAA)n Simple_repeat Simple_repeat 6 49 0 779 209 89 0 chr1 130149580 130149738 -152043926 - MER45A DNA AcHobo -6 172 1 312 247 0 0 chr1 130150101 130150178 -152043486 - L2 LINE L2 -1 3312 3236 704 262 101 10 chr1 130150425 130150785 -152042879 - L2 LINE L2 -254 3059 2678 748 304 25 4 chr1 130151151 130151394 -152042270 - MIR SINE MIR -10 252 5 371 250 47 19 chr1 130151559 130151736 -152041928 + L1ME3A LINE L1 5661 5833 -312 593 332 12 33 chr1 130152112 130152356 -152041308 - MIR SINE MIR -1 261 23 528 268 7 7 chr1 130152435 130152573 -152041091 - MIR SINE MIR -108 154 17 30 45 0 0 chr1 130152647 130152691 -152040973 + AT_rich Low_complexity Low_complexity 1 44 0 328 337 116 12 chr1 130152838 130153010 -152040654 + L2 LINE L2 3081 3270 -2 2016 161 12 59 chr1 130154149 130154571 -152039093 - LTR47A LTR ERVL -50 402 1 318 333 123 57 chr1 130155247 130155565 -152038099 + L2 LINE L2 2917 3255 -17 550 226 104 140 chr1 130155965 130156350 -152037314 - MLT1J LTR MaLR -138 373 3 207 321 48 0 chr1 130156350 130156434 -152037230 + MIR SINE MIR 156 243 -19 202 208 75 0 chr1 130156466 130156519 -152037145 + L2 LINE L2 3213 3269 -3 356 200 11 0 chr1 130157841 130157936 -152035728 + (TA)n Simple_repeat Simple_repeat 1 96 0 363 246 142 8 chr1 130157938 130158072 -152035592 - L2 LINE L2 -16 3297 3146 189 107 0 0 chr1 130158096 130158124 -152035540 + (CA)n Simple_repeat Simple_repeat 1 28 0 1838 152 0 42 chr1 130158181 130158490 -152035174 + AluJo SINE Alu 1 296 -16 422 221 308 0 chr1 130158497 130158669 -152034995 - MIR SINE MIR -6 256 32 234 0 0 0 chr1 130158929 130158955 -152034709 + (A)n Simple_repeat Simple_repeat 1 26 0 1870 122 18 21 chr1 130159454 130159733 -152033931 + AluSx SINE Alu 1 278 -34 195 42 0 0 chr1 130159734 130159758 -152033906 + (GGAAA)n Simple_repeat Simple_repeat 2 25 0 1197 67 11 11 chr1 130159800 130159978 -152033686 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 353 91 39 26 chr1 130159983 130160060 -152033604 + GA-rich Low_complexity Low_complexity 3 80 0 1734 172 0 40 chr1 130161322 130161624 -152032040 - AluJo SINE Alu -22 290 1 375 23 0 0 chr1 130162778 130162822 -152030842 + (TG)n Simple_repeat Simple_repeat 2 45 0 2791 186 63 6 chr1 130162982 130163521 -152030143 + MER97c DNA MER1_type? 1 570 -520 6373 125 12 19 chr1 130163687 130164712 -152028952 - L1MA4A LINE L1 -6 6297 5280 24 0 0 0 chr1 130165111 130165135 -152028529 + AT_rich Low_complexity Low_complexity 1 24 0 493 220 73 129 chr1 130165263 130165604 -152028060 + MER97c DNA MER1_type? 768 1089 -1 226 272 98 11 chr1 130166381 130166473 -152027191 + MLT1K LTR MaLR 183 282 -306 233 280 93 33 chr1 130166556 130166706 -152026958 + MLT1K LTR MaLR 412 570 -18 234 253 169 0 chr1 130167224 130167307 -152026357 - MIR SINE MIR -31 231 135 798 271 107 13 chr1 130168086 130168459 -152025205 + L2 LINE L2 2898 3305 -8 311 167 117 167 chr1 130168479 130168641 -152025023 - MIR SINE MIR -75 187 34 234 0 0 0 chr1 130168775 130168801 -152024863 + (A)n Simple_repeat Simple_repeat 1 26 0 336 272 110 46 chr1 130170185 130170358 -152023306 + MIR SINE MIR 9 192 -70 494 225 72 7 chr1 130170469 130170607 -152023057 + L2 LINE L2 3167 3313 0 392 342 98 11 chr1 130171438 130171622 -152022042 - MIR SINE MIR -31 231 32 268 282 94 8 chr1 130173869 130173986 -152019678 - MIR SINE MIR -135 127 1 244 344 21 0 chr1 130174979 130175072 -152018592 + L3 LINE CR1 1091 1185 -392 204 265 7 20 chr1 130175342 130175492 -152018172 + CT-rich Low_complexity Low_complexity 1 148 0 2550 77 0 0 chr1 130175570 130175881 -152017783 - AluY SINE Alu 0 311 1 2459 96 0 0 chr1 130175937 130176249 -152017415 - AluSx SINE Alu 0 312 1 229 268 155 0 chr1 130176754 130176825 -152016839 + MIR3 SINE MIR 127 208 0 690 239 166 24 chr1 130177019 130177266 -152016398 + L3 LINE CR1 1187 1468 -109 201 74 0 0 chr1 130178161 130178188 -152015476 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 391 331 78 0 chr1 130179017 130179171 -152014493 - MIR SINE MIR -95 167 2 324 263 111 0 chr1 130179938 130180037 -152013627 + MIR SINE MIR 81 190 -72 261 179 63 95 chr1 130180138 130180233 -152013431 + L2 LINE L2 3222 3313 0 192 294 0 0 chr1 130180594 130180645 -152013019 - MIR SINE MIR -67 141 91 304 184 0 0 chr1 130180799 130180848 -152012816 - L2 LINE L2 -3 3269 3221 486 278 35 0 chr1 130181533 130181686 -152011978 - MIR3 SINE MIR -18 190 27 489 298 33 28 chr1 130182187 130182368 -152011296 + MIR3 SINE MIR 19 200 -8 354 153 0 0 chr1 130182862 130182921 -152010743 - MER91A DNA MER1_type -137 59 1 2293 118 0 0 chr1 130183030 130183326 -152010338 + AluSx SINE Alu 1 296 -16 645 233 18 58 chr1 130183671 130183894 -152009770 - MLT1H LTR MaLR -197 352 139 306 337 110 32 chr1 130184187 130184469 -152009195 + L1ME4a LINE L1 5630 5933 -188 994 206 5 0 chr1 130184478 130184667 -152008997 + L1MD2 LINE L1 6158 6347 -12 1305 196 161 0 chr1 130184797 130185097 -152008567 - AluJb SINE Alu 0 342 1 890 206 6 11 chr1 130185427 130185602 -152008062 + AluJo SINE Alu 124 297 -15 343 288 15 103 chr1 130186725 130186936 -152006728 - HAL1 LINE L1 -17 2490 2307 1773 140 52 25 chr1 130186936 130187222 -152006442 + AluJb SINE Alu 1 294 -18 343 288 15 103 chr1 130187222 130187281 -152006383 - HAL1 LINE L1 -200 2307 2244 487 312 63 91 chr1 130187289 130188070 -152005594 + L1MEc LINE L1 55 813 -5583 2340 98 3 0 chr1 130188070 130188366 -152005298 + AluSc SINE Alu 1 297 -12 487 312 63 91 chr1 130188366 130188420 -152005244 + L1MEc LINE L1 813 867 -5529 463 291 70 35 chr1 130188679 130188851 -152004813 - MIR3 SINE MIR -7 201 24 2625 156 17 7 chr1 130189257 130189679 -152003985 - MSTB LTR MaLR 0 426 1 9038 179 20 14 chr1 130189679 130191320 -152002344 - MSTB-int LTR MaLR 0 1651 1 2639 147 47 0 chr1 130191320 130191727 -152001937 - MSTB LTR MaLR 0 426 1 311 228 73 147 chr1 130192222 130192344 -152001320 - MIR SINE MIR -21 241 151 2176 128 0 7 chr1 130192344 130192650 -152001014 - AluSc SINE Alu -5 304 1 311 228 73 147 chr1 130192650 130192789 -152000875 - MIR SINE MIR -111 151 3 216 0 0 0 chr1 130193036 130193060 -152000604 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr1 130193176 130193197 -152000467 + AT_rich Low_complexity Low_complexity 1 21 0 275 269 13 26 chr1 130193922 130194000 -151999664 + L2 LINE L2 3236 3312 -1 548 243 28 7 chr1 130194274 130194418 -151999246 - MER117 DNA MER1_type -47 150 4 270 214 18 0 chr1 130195502 130195558 -151998106 + L2 LINE L2 3216 3272 0 38 0 0 0 chr1 130195567 130195605 -151998059 + AT_rich Low_complexity Low_complexity 1 38 0 305 330 241 28 chr1 130196232 130196444 -151997220 + L2 LINE L2 3015 3271 -1 508 243 40 26 chr1 130196688 130196840 -151996824 + MER58B DNA MER1_type 171 324 -17 258 351 83 24 chr1 130197062 130197230 -151996434 + MIR SINE MIR 14 191 -71 330 324 50 36 chr1 130197270 130197489 -151996175 + MIR SINE MIR 8 229 -33 286 245 158 43 chr1 130197599 130197738 -151995926 + MIR3 SINE MIR 6 160 -48 318 148 0 0 chr1 130198000 130198054 -151995610 + (TG)n Simple_repeat Simple_repeat 2 55 0 466 223 20 88 chr1 130198450 130198598 -151995066 + MIR SINE MIR 3 140 -68 653 184 29 15 chr1 130199444 130199580 -151994084 - MIR3 SINE MIR -2 206 69 247 257 0 57 chr1 130199583 130199653 -151994011 - L2 LINE L2 -2 3270 3205 224 365 85 28 chr1 130199660 130199871 -151993793 - L2 LINE L2 -194 3078 2856 181 250 62 12 chr1 130200202 130200282 -151993382 + L2 LINE L2 1820 1903 -1411 2412 211 74 34 chr1 130201171 130201739 -151991925 + MLT1E LTR MaLR 3 593 0 208 325 74 43 chr1 130201854 130202017 -151991647 + L2 LINE L2 2881 3048 -224 407 152 0 0 chr1 130202703 130202769 -151990895 + MER53 DNA DNA 122 187 -2 2573 223 36 4 chr1 130203923 130204471 -151989193 + MLT1F1 LTR MaLR 2 567 0 2533 64 0 0 chr1 130204526 130204839 -151988825 - L1PA5 LINE L1 0 6154 5842 240 35 0 0 chr1 130205026 130205055 -151988609 + (TC)n Simple_repeat Simple_repeat 1 29 0 239 228 228 0 chr1 130205066 130205158 -151988506 + L2 LINE L2 3201 3313 0 209 271 0 0 chr1 130205374 130205422 -151988242 - MIR SINE MIR -74 134 87 358 250 32 16 chr1 130205461 130205585 -151988079 + L1ME3A LINE L1 5840 5965 -205 2289 115 0 0 chr1 130205819 130206124 -151987540 + AluSg SINE Alu 1 305 -5 301 311 57 51 chr1 130207344 130207521 -151986143 - MIR SINE MIR 0 262 85 746 232 40 11 chr1 130207962 130208139 -151985525 + MIR SINE MIR 81 262 0 3215 239 76 3 chr1 130208818 130209665 -151983999 + L1MEc LINE L1 35 942 -5454 1878 135 43 21 chr1 130209652 130209792 -151983872 + L1MC2 LINE L1 5440 5575 -758 * 206 32 32 0 chr1 130209792 130209823 -151983841 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1878 135 43 21 chr1 130209823 130210007 -151983657 + L1MC2 LINE L1 5575 5771 -562 257 215 0 15 chr1 130210009 130210074 -151983590 + L1MC2 LINE L1 5846 5909 -435 * 1939 271 92 51 chr1 130210072 130211372 -151982292 + L1PBa LINE L1 45 1398 -1109 342 239 0 0 chr1 130211386 130211541 -151982123 + (CA)n Simple_repeat Simple_repeat 2 156 0 563 209 43 21 chr1 130211557 130211732 -151981932 + L1PBa LINE L1 1381 1779 -964 347 188 14 167 chr1 130213349 130213487 -151980177 + HAL1 LINE L1 1534 1650 -857 326 272 69 21 chr1 130213668 130213855 -151979809 + MER20B DNA MER1_type 23 219 0 2519 93 0 0 chr1 130213938 130214248 -151979416 + AluSq SINE Alu 1 310 -3 365 248 47 47 chr1 130214473 130214602 -151979062 + L2 LINE L2 2582 2710 -604 359 291 81 41 chr1 130215185 130215357 -151978307 - MIR3 SINE MIR -24 184 6 1918 123 3 87 chr1 130215510 130215844 -151977820 - AluSx SINE Alu -6 306 1 253 304 68 47 chr1 130217101 130217249 -151976415 - MER5A DNA MER1_type -2 187 37 305 290 154 15 chr1 130217335 130217541 -151976123 - MIR SINE MIR -24 238 4 873 114 0 0 chr1 130217731 130217845 -151975819 - FLAM_C SINE Alu -29 114 1 1048 224 156 0 chr1 130218835 130219130 -151974534 + MER58B DNA MER1_type 1 341 0 215 283 21 6 chr1 130219907 130219997 -151973667 + MIR SINE MIR 68 158 -50 227 281 281 15 chr1 130221506 130221709 -151971955 + MIR SINE MIR 1 257 -5 243 285 77 62 chr1 130221932 130222062 -151971602 + MIR SINE MIR 35 166 -96 22 0 0 0 chr1 130225153 130225175 -151968489 + AT_rich Low_complexity Low_complexity 1 22 0 258 32 0 0 chr1 130225650 130225681 -151967983 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr1 130226807 130226830 -151966834 + (CA)n Simple_repeat Simple_repeat 2 24 0 208 143 0 0 chr1 130228408 130228443 -151965221 + (A)n Simple_repeat Simple_repeat 1 35 0 195 42 0 0 chr1 130229341 130229365 -151964299 + (A)n Simple_repeat Simple_repeat 1 24 0 351 179 143 0 chr1 130230777 130230861 -151962803 + MIR SINE MIR 126 221 -41 330 45 0 0 chr1 130231166 130231210 -151962454 + (CA)n Simple_repeat Simple_repeat 2 45 0 2181 138 3 32 chr1 130232610 130232957 -151960707 - MER1B DNA MER1_type 0 337 1 226 212 118 12 chr1 130233588 130233673 -151959991 + L1 LINE L1 4721 4814 -1332 386 269 210 26 chr1 130233994 130234511 -151959153 + L1ME LINE L1 5172 5814 -307 275 257 68 55 chr1 130237283 130237419 -151956245 - MIR SINE MIR -32 176 72 517 278 11 61 chr1 130238030 130238210 -151955454 - MIR SINE MIR -38 224 54 408 230 71 9 chr1 130241283 130241396 -151952268 - L2 LINE L2 -1 3312 3193 744 185 86 30 chr1 130241523 130241675 -151951989 + Charlie5 DNA MER1_type 2341 2512 -73 1736 172 0 20 chr1 130241675 130241971 -151951693 - AluJo SINE Alu -22 290 1 744 185 86 30 chr1 130241971 130242050 -151951614 + Charlie5 DNA MER1_type 2512 2585 0 2264 116 0 3 chr1 130242703 130243004 -151950660 + AluSc SINE Alu 1 300 -9 275 213 102 65 chr1 130243734 130243842 -151949822 - L2 LINE L2 -26 3287 3176 523 318 39 47 chr1 130248259 130248514 -151945150 + MIR SINE MIR 1 253 -9 3058 237 64 7 chr1 130248866 130249947 -151943717 - L1ME3 LINE L1 -8 6154 5014 24 0 0 0 chr1 130250362 130250386 -151943278 + AT_rich Low_complexity Low_complexity 1 24 0 523 189 0 27 chr1 130250938 130251049 -151942615 - L1ME3A LINE L1 -22 6148 6041 250 24 71 0 chr1 130251064 130251106 -151942558 + T-rich Low_complexity Low_complexity 3 47 0 443 75 0 15 chr1 130251137 130251204 -151942460 - L1PA6 LINE L1 0 6154 6089 440 225 7 94 chr1 130251756 130251894 -151941770 + MIR SINE MIR 83 208 -54 952 248 113 90 chr1 130252381 130252905 -151940759 - LTR67 LTR ERVL -2 555 20 192 152 0 0 chr1 130253179 130253212 -151940452 + A-rich Low_complexity Low_complexity 1 33 0 259 208 91 13 chr1 130253241 130253318 -151940346 + MIR SINE MIR 59 141 -67 468 198 129 0 chr1 130253910 130254026 -151939638 + MER5A DNA MER1_type 59 189 0 742 245 182 9 chr1 130254595 130254942 -151938722 - LTR33 LTR ERVL 0 521 115 416 222 26 8 chr1 130255036 130255153 -151938511 + Charlie1 DNA MER1_type 2643 2761 0 245 250 97 5 chr1 130255881 130255993 -151937671 + MLT1L LTR MaLR 110 233 -355 290 240 223 58 chr1 130256659 130256780 -151936884 + MIR SINE MIR 122 262 0 307 238 36 0 chr1 130256790 130256874 -151936790 + MIR3 SINE MIR 104 190 -18 207 305 30 99 chr1 130257166 130257297 -151936367 + MIR SINE MIR 111 232 -30 1983 151 3 10 chr1 130257677 130257975 -151935689 - AluJb SINE Alu -16 296 1 2732 23 0 3 chr1 130258039 130258343 -151935321 - AluY SINE Alu -8 303 1 289 328 8 37 chr1 130259327 130259461 -151934203 - MER5A DNA MER1_type 0 189 60 1572 174 42 48 chr1 130259914 130260089 -151933575 - AluJo SINE Alu -4 308 134 2525 57 0 7 chr1 130260089 130260386 -151933278 - AluY SINE Alu -16 295 1 1572 174 42 48 chr1 130260386 130260520 -151933144 - AluJo SINE Alu -178 134 1 340 305 136 7 chr1 130260789 130260943 -151932721 + MIR3 SINE MIR 12 185 -23 324 301 12 0 chr1 130261714 130261797 -151931867 - MIR SINE MIR -148 114 31 213 157 60 12 chr1 130261872 130261955 -151931709 + CT-rich Low_complexity Low_complexity 3 89 0 319 279 25 49 chr1 130262313 130262435 -151931229 + MIR SINE MIR 102 220 -42 222 277 84 24 chr1 130262487 130262570 -151931094 - MIR SINE MIR -112 150 63 615 260 115 10 chr1 130263307 130263515 -151930149 - MIR SINE MIR -10 252 23 3188 150 28 4 chr1 130263640 130264141 -151929523 - MLT2B2 LTR ERVL -2 513 1 236 318 135 35 chr1 130264190 130264567 -151929097 + L2 LINE L2 2499 2913 -401 215 355 107 0 chr1 130264618 130264739 -151928925 - L2 LINE L2 0 3313 3180 * 509 295 58 13 chr1 130264718 130264942 -151928722 - L2 LINE L2 -372 2942 2709 308 262 2 0 chr1 130266982 130267069 -151926595 - MLT1J2 LTR MaLR -13 428 320 2310 98 7 0 chr1 130267369 130267666 -151925998 + AluSg SINE Alu 1 299 -11 480 319 49 0 chr1 130267676 130267839 -151925825 - MIR SINE MIR 0 262 92 303 311 83 30 chr1 130267938 130268070 -151925594 - MIR3 SINE MIR -62 146 8 351 323 73 16 chr1 130268346 130268470 -151925194 + MIR SINE MIR 14 144 -118 369 243 24 12 chr1 130268757 130268926 -151924738 + (CATA)n Simple_repeat Simple_repeat 4 174 0 203 273 17 23 chr1 130268948 130269124 -151924540 + (CATA)n Simple_repeat Simple_repeat 1 175 0 * 321 302 0 0 chr1 130269082 130269261 -151924403 + (CA)n Simple_repeat Simple_repeat 2 180 0 2133 137 60 53 chr1 130269265 130269618 -151924046 + Tigger2a DNA MER2_type 1 359 -2349 2438 110 34 6 chr1 130269618 130269972 -151923692 + THE1B LTR MaLR 1 364 0 2133 137 60 53 chr1 130269972 130270048 -151923616 + Tigger2a DNA MER2_type 359 433 -1 288 229 0 0 chr1 130270049 130270132 -151923532 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 276 172 0 69 chr1 130270309 130270367 -151923297 - MIR3 SINE MIR -44 164 111 830 253 91 5 chr1 130270386 130270607 -151923057 - MIR SINE MIR -21 241 2 503 303 51 15 chr1 130271332 130271527 -151922137 + MIR SINE MIR 59 260 -2 643 289 78 55 chr1 130272333 130272679 -151920985 + L2 LINE L2 2910 3263 -9 231 203 0 0 chr1 130272947 130273011 -151920653 + (TG)n Simple_repeat Simple_repeat 1 64 0 238 301 98 24 chr1 130273125 130273248 -151920416 + L2 LINE L2 3138 3269 -3 446 319 97 5 chr1 130273766 130273982 -151919682 - MIR SINE MIR -8 254 19 266 258 15 0 chr1 130274417 130274483 -151919181 - MIR SINE MIR -130 132 66 717 162 17 0 chr1 130274794 130274967 -151918697 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 210 268 126 67 chr1 130275215 130275484 -151918180 - L2 LINE L2 -358 2956 2672 423 0 0 0 chr1 130275619 130275666 -151917998 + (CA)n Simple_repeat Simple_repeat 1 47 0 309 68 0 0 chr1 130278147 130278191 -151915473 + (TG)n Simple_repeat Simple_repeat 2 45 0 248 254 0 14 chr1 130278527 130278598 -151915066 - MER103 DNA DNA -83 83 14 180 152 0 0 chr1 130278845 130278878 -151914786 - L2 LINE L2 -1 3312 3280 833 188 7 0 chr1 130279628 130279772 -151913892 + MER5A DNA MER1_type 43 187 -2 242 370 39 24 chr1 130280158 130280285 -151913379 - L2 LINE L2 -3 3310 3182 1742 178 0 0 chr1 130280298 130280596 -151913068 - AluJb SINE Alu -14 298 1 551 300 38 67 chr1 130281151 130281361 -151912303 + MIR SINE MIR 2 205 -57 679 281 96 36 chr1 130281734 130282036 -151911628 + L1ME4a LINE L1 5515 5834 -287 232 278 46 73 chr1 130282091 130282242 -151911422 + MIR SINE MIR 112 258 -4 213 293 73 0 chr1 130282554 130282636 -151911028 + MIR SINE MIR 49 136 -126 299 318 56 32 chr1 130282704 130282853 -151910811 - MIR SINE MIR -67 141 16 2443 163 63 36 chr1 130282854 130283381 -151910283 - L1MB7 LINE L1 -10 6174 5634 259 182 212 0 chr1 130283381 130283447 -151910217 + MER103 DNA DNA 24 103 -63 330 204 71 51 chr1 130283498 130283596 -151910068 - MIR3 SINE MIR -35 173 74 197 196 18 89 chr1 130283862 130283918 -151909746 - MER5B DNA MER1_type -110 68 17 36 23 0 0 chr1 130284135 130284178 -151909486 + AT_rich Low_complexity Low_complexity 1 43 0 454 246 158 38 chr1 130284182 130284365 -151909299 - MIR SINE MIR -13 249 45 616 322 59 4 chr1 130284385 130284640 -151909024 + L1ME LINE L1 5432 5700 -421 261 344 123 0 chr1 130284834 130284956 -151908708 - L3 LINE CR1 -201 1376 1240 377 283 152 21 chr1 130284983 130285174 -151908490 - MIR SINE MIR -27 235 20 219 272 65 43 chr1 130285429 130285521 -151908143 - L3 LINE CR1 -776 801 708 337 354 55 0 chr1 130285577 130285704 -151907960 + MIR SINE MIR 28 161 -101 276 277 31 0 chr1 130286324 130286389 -151907275 + L2 LINE L2 3206 3272 0 24 32 0 0 chr1 130286900 130286931 -151906733 + AT_rich Low_complexity Low_complexity 1 31 0 285 211 40 26 chr1 130287068 130287144 -151906520 + MIR SINE MIR 67 143 -119 203 272 192 8 chr1 130287965 130288090 -151905574 - L2 LINE L2 -19 3294 3147 523 253 156 0 chr1 130288403 130288557 -151905107 - MIR SINE MIR -1 261 84 392 296 19 0 chr1 130288564 130288672 -151904992 - MIR3 SINE MIR -17 191 82 591 277 56 35 chr1 130288805 130289036 -151904628 + MLT1J LTR MaLR 17 252 -259 308 289 93 0 chr1 130289238 130289335 -151904329 - MLT1I LTR MaLR -295 114 9 261 246 0 29 chr1 130289808 130289877 -151903787 - L2 LINE L2 -14 3258 3192 186 266 89 13 chr1 130290319 130290398 -151903266 + MIR SINE MIR 63 147 -61 226 323 0 0 chr1 130291008 130291070 -151902594 + MIR SINE MIR 111 172 -90 605 302 62 0 chr1 130291392 130291584 -151902080 + MIR SINE MIR 56 259 -3 506 291 21 21 chr1 130292578 130292767 -151900897 + MER5A DNA MER1_type 1 189 0 2125 193 22 24 chr1 130292876 130293295 -151900369 - L1ME2 LINE L1 -106 6058 5640 2060 147 72 23 chr1 130293295 130293642 -151900022 + THE1B LTR MaLR 1 364 0 11614 77 11 59 chr1 130293642 130295302 -151898362 + THE1B-int LTR MaLR 1 1580 0 2117 143 76 15 chr1 130295302 130295645 -151898019 + THE1B LTR MaLR 1 364 0 2125 193 22 24 chr1 130295645 130295675 -151897989 - L1ME2 LINE L1 -521 5643 5608 781 240 99 5 chr1 130295683 130295875 -151897789 + MLT1E3 LTR MaLR 1 210 -383 1263 226 64 7 chr1 130295883 130296179 -151897485 + MLT1E3 LTR MaLR 312 624 0 828 202 114 87 chr1 130296189 130296818 -151896846 + L1ME LINE L1 4981 5612 -552 352 254 118 50 chr1 130297081 130297360 -151896304 - HAL1 LINE L1 -196 2311 2014 760 263 44 15 chr1 130297915 130298185 -151895479 - HAL1 LINE L1 -487 2020 1743 7235 50 6 1 chr1 130298186 130299112 -151894552 + L1PA7 LINE L1 5225 6154 0 1588 179 10 3 chr1 130299270 130299567 -151894097 + AluJb SINE Alu 1 299 -13 5395 210 25 16 chr1 130300052 130301315 -151892349 - L1MEd LINE L1 -2583 3546 2272 2450 159 30 26 chr1 130301315 130301425 -151892239 + L1PB4 LINE L1 5691 5799 -357 249 33 0 0 chr1 130301425 130301455 -151892209 + (CA)n Simple_repeat Simple_repeat 2 31 0 2450 159 30 26 chr1 130301455 130301808 -151891856 + L1PB4 LINE L1 5799 6156 0 2101 103 7 3 chr1 130302482 130302783 -151890881 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr1 130302824 130302853 -151890811 + AT_rich Low_complexity Low_complexity 1 29 0 315 267 37 7 chr1 130302898 130303033 -151890631 - L1MEd LINE L1 -3791 2338 2200 2070 126 3 3 chr1 130304154 130304464 -151889200 - AluSx SINE Alu -2 310 1 349 282 19 71 chr1 130304473 130304739 -151888925 - L1MEd LINE L1 -4887 1232 981 1914 0 0 0 chr1 130304892 130305101 -151888563 - AluYa5 SINE Alu -11 300 92 1769 129 0 25 chr1 130305621 130305899 -151887765 + AluSx SINE Alu 3 273 -39 21 0 0 0 chr1 130306104 130306125 -151887539 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 130306996 130307022 -151886642 + AT_rich Low_complexity Low_complexity 1 26 0 1285 181 98 78 chr1 130307148 130307190 -151886474 - HAL1 LINE L1 -833 1674 1634 207 0 0 0 chr1 130307190 130307213 -151886451 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 1717 146 0 0 chr1 130307216 130307491 -151886173 - AluJb SINE Alu -31 281 7 1285 181 98 78 chr1 130307491 130307891 -151885773 - HAL1 LINE L1 -874 1633 1219 258 265 176 0 chr1 130307892 130307994 -151885670 - L3 LINE CR1 -670 907 788 455 242 26 35 chr1 130308126 130308267 -151885397 + MIR SINE MIR 16 154 -64 299 222 40 0 chr1 130309329 130309428 -151884236 - L1MEd LINE L1 -5120 999 897 391 188 84 180 chr1 130309511 130309878 -151883786 + L1M4 LINE L1 2891 3222 -2924 513 257 53 20 chr1 130310054 130310206 -151883458 + L2 LINE L2 2265 2421 -893 841 308 117 30 chr1 130310213 130310882 -151882782 + L2 LINE L2 2596 3313 0 302 322 59 17 chr1 130311090 130311208 -151882456 + L2 LINE L2 3149 3271 -1 557 256 35 23 chr1 130312832 130313004 -151880660 + MIR SINE MIR 86 259 -3 454 247 76 38 chr1 130313253 130313411 -151880253 - MIR SINE MIR -68 194 31 395 278 30 0 chr1 130313531 130313664 -151880000 + LTR67 LTR ERVL 414 550 -7 1581 173 18 0 chr1 130314379 130314662 -151879002 - AluJo SINE Alu -24 288 1 2109 118 3 0 chr1 130315115 130315419 -151878245 - AluSq SINE Alu -2 311 7 3955 250 145 26 chr1 130315533 130316866 -151876798 + L2 LINE L2 1276 2801 -513 1740 117 46 7 chr1 130316866 130317148 -151876516 - AluJb SINE Alu -19 293 1 3955 250 145 26 chr1 130317148 130317282 -151876382 + L2 LINE L2 2801 2918 -396 242 304 43 0 chr1 130317709 130317778 -151875886 + L2 LINE L2 3186 3257 -15 225 135 22 45 chr1 130318241 130318330 -151875334 + GA-rich Low_complexity Low_complexity 1 87 0 474 280 34 0 chr1 130319066 130319184 -151874480 - MIR3 SINE MIR -49 159 38 381 121 0 0 chr1 130319760 130319818 -151873846 + AluS SINE Alu 1 58 -244 2043 82 15 0 chr1 130319818 130320088 -151873576 + AluSp SINE Alu 25 298 -15 729 262 149 93 chr1 130320170 130321216 -151872448 + L1M4 LINE L1 15 1119 -5423 671 136 0 68 chr1 130321216 130321348 -151872316 - MER20 DNA MER1_type -96 123 1 3459 191 120 23 chr1 130321358 130322646 -151871018 + L1ME1 LINE L1 4755 6162 -4 209 261 0 62 chr1 130322896 130322961 -151870703 + MIR3 SINE MIR 101 161 -47 213 321 179 0 chr1 130323107 130323191 -151870473 - MIR SINE MIR -70 192 94 926 157 31 61 chr1 130323193 130323218 -151870446 + L1MB4 LINE L1 5958 5982 -198 2638 89 22 6 chr1 130323218 130323576 -151870088 + THE1B LTR MaLR 1 364 0 926 157 31 61 chr1 130323576 130323779 -151869885 + L1MB4 LINE L1 5982 6179 -1 888 202 49 6 chr1 130326159 130326342 -151867322 + MER58A DNA MER1_type 4 194 -30 261 0 0 0 chr1 130326621 130326650 -151867014 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 360 0 0 0 chr1 130326649 130326689 -151866975 + (GA)n Simple_repeat Simple_repeat 2 41 0 242 294 0 0 chr1 130327265 130327316 -151866348 + L2 LINE L2 3210 3260 -12 189 0 0 0 chr1 130327777 130327798 -151865866 + (TAA)n Simple_repeat Simple_repeat 2 22 0 963 229 95 4 chr1 130330958 130331318 -151862346 - L1M4 LINE L1 -2037 4109 3702 5031 187 11 6 chr1 130331344 130334976 -151858688 - L1PB1 LINE L1 -4 6147 2354 4284 238 75 29 chr1 130335578 130336986 -151856678 - L1MEc LINE L1 -4888 1508 37 413 319 121 13 chr1 130336997 130337229 -151856435 - L3 LINE CR1 -1107 470 214 1420 129 184 0 chr1 130337583 130337861 -151855803 - L1MB2 LINE L1 0 6171 5843 1268 154 228 21 chr1 130338129 130338414 -151855250 + MER2 DNA MER2_type 1 344 0 2358 94 3 0 chr1 130339142 130339450 -151854214 - AluSx SINE Alu -3 309 1 39 68 0 0 chr1 130339838 130339912 -151853752 + AT_rich Low_complexity Low_complexity 1 74 0 618 179 57 0 chr1 130340041 130340181 -151853483 + L1ME2 LINE L1 5746 5893 -273 789 135 169 0 chr1 130340185 130340333 -151853331 - L1MB2 LINE L1 -8 6163 5991 449 254 164 16 chr1 130340335 130340524 -151853140 + L1ME2 LINE L1 5904 6120 -44 306 0 0 0 chr1 130340746 130340780 -151852884 + (TG)n Simple_repeat Simple_repeat 2 35 0 1113 151 27 11 chr1 130341011 130341196 -151852468 + MER5A DNA MER1_type 1 188 -1 545 300 77 39 chr1 130341556 130341816 -151851848 - L2 LINE L2 -2 3311 3042 435 250 121 0 chr1 130341924 130342048 -151851616 - L2 LINE L2 -8 3305 3167 705 187 8 8 chr1 130342056 130342179 -151851485 + FLAM_C SINE Alu 1 123 -20 188 141 42 84 chr1 130342196 130342208 -151851456 - L2 LINE L2 -163 3150 3139 2033 163 30 11 chr1 130342208 130342576 -151851088 + THE1C LTR MaLR 1 375 0 188 141 42 84 chr1 130342576 130342634 -151851030 - L2 LINE L2 -174 3139 3083 320 274 88 44 chr1 130342722 130342835 -151850829 + L2 LINE L2 3192 3309 -4 505 273 30 30 chr1 130343271 130343469 -151850195 + L1MC/D LINE L1 5599 5796 -2012 25 0 0 0 chr1 130343575 130343600 -151850064 + AT_rich Low_complexity Low_complexity 1 25 0 238 275 146 53 chr1 130344098 130344345 -151849319 - L1MC/D LINE L1 -573 5548 5279 310 344 69 6 chr1 130344346 130344506 -151849158 - L1MC/D LINE L1 -921 5225 5056 495 185 156 0 chr1 130344825 130344960 -151848704 - L1ME LINE L1 -309 5812 5657 261 236 150 24 chr1 130345864 130345991 -151847673 - HAL1 LINE L1 -497 2010 1868 1119 217 192 21 chr1 130346001 130346429 -151847235 - HAL1 LINE L1 -711 1796 1296 255 224 0 0 chr1 130346538 130346587 -151847077 - HAL1 LINE L1 -1666 841 793 233 350 40 0 chr1 130346754 130346854 -151846810 + L2 LINE L2 2980 3083 -189 320 120 120 53 chr1 130347623 130347698 -151845966 + MER116 DNA Mariner 1 80 0 183 146 0 0 chr1 130348028 130348069 -151845595 + (TA)n Simple_repeat Simple_repeat 1 41 0 352 306 97 22 chr1 130348071 130348205 -151845459 + MER117 DNA MER1_type 53 196 -1 1553 246 83 43 chr1 130348467 130349204 -151844460 + L1MC4 LINE L1 7260 8025 -17 342 248 147 18 chr1 130349736 130349845 -151843819 + L2 LINE L2 3190 3312 -1 735 248 43 6 chr1 130350166 130350327 -151843337 + MER5A DNA MER1_type 9 175 -14 470 269 152 0 chr1 130351259 130351404 -151842260 - MIR SINE MIR -3 259 93 223 135 39 0 chr1 130353748 130353800 -151839864 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 311 56 22 chr1 130355007 130355097 -151838567 + L2 LINE L2 3154 3246 -26 755 163 30 48 chr1 130355765 130355931 -151837733 - MER106B DNA MER1_type 0 1059 897 183 274 145 0 chr1 130355966 130356028 -151837636 - MIR3 SINE MIR -45 163 93 452 271 85 8 chr1 130358592 130358710 -151834954 - L2 LINE L2 0 3272 3146 204 296 0 0 chr1 130358893 130358937 -151834727 - L2 LINE L2 -10 3262 3219 668 241 162 13 chr1 130359339 130359567 -151834097 + MIR SINE MIR 1 262 0 2178 128 0 0 chr1 130359725 130360030 -151833634 - AluSx SINE Alu -5 307 3 13719 132 35 41 chr1 130360964 130363374 -151830290 - Tigger1 DNA MER2_type 0 2418 23 637 312 159 16 chr1 130364032 130364541 -151829123 + L1MC4a LINE L1 5338 5919 -1889 580 228 56 41 chr1 130364830 130365027 -151828637 - L1ME3 LINE L1 -46 6116 5917 1969 117 57 0 chr1 130365035 130365317 -151828347 + AluSx SINE Alu 1 298 -14 1291 274 127 44 chr1 130366167 130367008 -151826656 - HAL1 LINE L1 -605 1902 992 316 288 118 12 chr1 130367323 130367493 -151826171 - L1ME3 LINE L1 -223 5947 5760 4046 160 45 1 chr1 130368501 130369212 -151824452 + Tigger2 DNA MER2_type 1 742 -1976 1432 125 71 12 chr1 130369284 130369524 -151824140 + Tigger2 DNA MER2_type 2465 2718 0 10576 61 7 27 chr1 130369605 130371346 -151822318 + L1PA6 LINE L1 3962 5687 -467 700 43 11 11 chr1 130371352 130371444 -151822220 + L1PA6 LINE L1 6038 6129 -25 257 273 130 0 chr1 130371448 130371525 -151822139 - MER58 DNA MER1_type -254 87 1 1135 272 118 15 chr1 130371670 130372060 -151821604 + MLT1H LTR MaLR 111 540 -9 2717 254 71 15 chr1 130372993 130373797 -151819867 + L1ME1 LINE L1 42 890 -5506 5446 83 18 29 chr1 130373821 130374615 -151819049 + L1PA11 LINE L1 5390 6174 0 2187 219 51 30 chr1 130374626 130375422 -151818242 + L1ME1 LINE L1 4724 5541 -694 * 7637 84 8 6 chr1 130375420 130376483 -151817181 - L1PA7 LINE L1 -1680 4466 3401 6874 56 14 0 chr1 130376483 130378160 -151815504 + L1PA7 LINE L1 4464 6152 -2 2449 213 89 24 chr1 130378181 130378843 -151814821 + L1ME1 LINE L1 5526 6230 -5 182 343 76 30 chr1 130379522 130379720 -151813944 + L2 LINE L2 1234 1440 -1874 2546 266 118 31 chr1 130379757 130380594 -151813070 - L2 LINE L2 -251 3062 2125 1016 113 163 30 chr1 130380594 130380797 -151812867 + MER30 DNA MER1_type 1 230 0 2546 266 118 31 chr1 130380797 130380953 -151812711 - L2 LINE L2 -1188 2125 1984 467 271 77 24 chr1 130380947 130381117 -151812547 + L2 LINE L2 3128 3306 -7 * 4463 174 35 33 chr1 130383029 130384313 -151809351 - L1MB4 LINE L1 -2 6178 4899 837 117 0 0 chr1 130384337 130384457 -151809207 - AluSg/x SINE Alu -9 303 184 610 268 58 41 chr1 130384746 130384859 -151808805 - L1ME4a LINE L1 -264 5857 5747 933 211 29 5 chr1 130384859 130385063 -151808601 - MER3 DNA MER1_type 0 209 1 610 268 58 41 chr1 130385063 130385192 -151808472 - L1ME4a LINE L1 -374 5747 5611 1982 79 4 4 chr1 130385230 130385495 -151808169 + THE1C LTR MaLR 111 375 0 194 338 60 38 chr1 130386567 130386700 -151806964 + L2 LINE L2 3136 3271 -1 314 294 92 26 chr1 130386885 130387038 -151806626 - MIR SINE MIR -86 176 14 482 228 104 104 chr1 130387372 130387785 -151805879 - HAL1b LINE L1 0 1348 936 263 255 135 65 chr1 130387798 130387998 -151805666 - HAL1b LINE L1 -692 656 443 335 191 32 53 chr1 130388039 130388133 -151805531 - HAL1b LINE L1 -703 645 554 1754 147 35 3 chr1 130389160 130389446 -151804218 - AluJb SINE Alu -16 296 2 249 33 0 0 chr1 130389992 130390022 -151803642 + (TG)n Simple_repeat Simple_repeat 2 31 0 71 24 0 0 chr1 130390369 130390454 -151803210 + AT_rich Low_complexity Low_complexity 1 85 0 1214 204 37 24 chr1 130390696 130391092 -151802572 + MER65C LTR ERV1 1 461 0 251 180 60 0 chr1 130391275 130391325 -151802339 - L1P4 LINE L1 -525 5649 5597 564 274 80 29 chr1 130391463 130391838 -151801826 - L1MB4 LINE L1 -1274 4872 4457 23 0 0 0 chr1 130391838 130391861 -151801803 + AT_rich Low_complexity Low_complexity 1 23 0 2715 130 14 11 chr1 130391879 130392325 -151801339 - L1MA4 LINE L1 -52 6248 5802 415 319 23 38 chr1 130392337 130392679 -151800985 - L1MB4 LINE L1 -1708 4438 4102 22 56 0 0 chr1 130393161 130393197 -151800467 + AT_rich Low_complexity Low_complexity 1 36 0 334 293 40 27 chr1 130393256 130393406 -151800258 - L1MC4a LINE L1 -1747 6061 5910 269 213 0 88 chr1 130393409 130393489 -151800175 - L1MC4a LINE L1 -1949 5859 5787 317 267 79 55 chr1 130393493 130393658 -151800006 + MER20B DNA MER1_type 5 173 -610 312 257 49 0 chr1 130393700 130393819 -151799845 - L1MC4a LINE L1 -367 5795 5668 239 333 81 49 chr1 130394166 130394601 -151799063 - L1MEc LINE L1 -5603 602 35 2258 97 3 3 chr1 130394707 130395005 -151798659 + AluSq SINE Alu 2 299 -14 294 50 0 0 chr1 130395005 130395045 -151798619 + (TA)n Simple_repeat Simple_repeat 2 41 0 667 306 112 48 chr1 130395357 130395879 -151797785 - L2 LINE L2 -149 3164 2624 1351 193 191 17 chr1 130396445 130396912 -151796752 - MER114 LTR ERV -5 643 96 371 305 68 32 chr1 130397237 130397486 -151796178 - L1ME4a LINE L1 -280 5841 5584 1083 204 88 50 chr1 130398031 130398483 -151795181 - L1ME2 LINE L1 -9 6155 5537 * 1661 252 162 11 chr1 130398482 130399299 -151794365 - L1MEc LINE L1 -4023 2230 1241 11703 125 32 17 chr1 130399301 130401208 -151792456 - Tigger1 DNA MER2_type 0 2418 484 2186 114 0 3 chr1 130401208 130401505 -151792159 - AluSx SINE Alu -16 296 1 964 187 0 0 chr1 130401512 130401683 -151791981 - AluY SINE Alu 0 311 141 1973 117 135 15 chr1 130401683 130402008 -151791656 - THE1B LTR MaLR 0 364 1 11119 88 25 3 chr1 130402008 130403543 -151790121 - THE1B-int LTR MaLR 0 1580 13 4764 152 49 35 chr1 130403543 130403955 -151789709 - Tigger1 DNA MER2_type -1524 894 489 2069 138 0 0 chr1 130403955 130404253 -151789411 - AluJo SINE Alu -14 298 1 4764 152 49 35 chr1 130404253 130404722 -151788942 - Tigger1 DNA MER2_type -1929 489 1 1135 245 55 51 chr1 130404767 130405274 -151788390 - L1MEc LINE L1 -5143 1253 745 2448 146 8 0 chr1 130405302 130405699 -151787965 + L1P LINE L1 4347 4746 -1400 260 330 75 59 chr1 130405937 130406295 -151787369 + L1MC/D LINE L1 5514 5877 -1931 2760 241 72 35 chr1 130406309 130407538 -151786126 + L1ME LINE L1 2187 3460 -2686 380 167 0 10 chr1 130407542 130407644 -151786020 + (TA)n Simple_repeat Simple_repeat 2 102 0 357 45 0 0 chr1 130407644 130407688 -151785976 + (CA)n Simple_repeat Simple_repeat 1 44 0 1547 199 3 3 chr1 130407702 130407988 -151785676 + AluJb SINE Alu 1 286 -26 1261 235 64 53 chr1 130408021 130408569 -151785095 + L1ME LINE L1 3485 4038 -2108 559 244 171 35 chr1 130408773 130409117 -151784547 + L1ME LINE L1 5267 5657 -505 416 353 35 14 chr1 130409134 130409423 -151784241 + L1MC4a LINE L1 5604 5898 -1910 629 191 87 0 chr1 130409630 130409745 -151783919 + FLAM_C SINE Alu 2 126 -17 22 35 0 0 chr1 130409831 130409860 -151783804 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 130412976 130413006 -151780658 + AT_rich Low_complexity Low_complexity 1 30 0 473 271 45 7 chr1 130413391 130413702 -151779962 - L1MC4a LINE L1 -468 5653 5493 2103 118 0 3 chr1 130413734 130414030 -151779634 + AluSx SINE Alu 1 295 -17 180 229 49 49 chr1 130414047 130414108 -151779556 - L2 LINE L2 -551 2763 2703 622 282 96 65 chr1 130414159 130414610 -151779054 + L2 LINE L2 2662 3141 -172 4228 124 40 15 chr1 130414632 130415351 -151778313 - Tigger3(Golem) DNA MER2_type -15 3014 2278 539 235 61 0 chr1 130415328 130415443 -151778221 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 358 300 147 7 chr1 130415466 130415616 -151778048 + L2 LINE L2 3142 3312 -1 783 228 22 33 chr1 130415775 130415959 -151777705 - MIR SINE MIR -64 198 17 186 43 0 0 chr1 130415959 130415982 -151777682 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 82 0 0 chr1 130416006 130416055 -151777609 + AT_rich Low_complexity Low_complexity 1 49 0 409 286 91 15 chr1 130416071 130416270 -151777394 - HAL1 LINE L1 -871 1636 1423 1265 233 82 41 chr1 130416589 130417027 -151776637 - LTR40c LTR ERVL -7 458 3 811 232 106 49 chr1 130417053 130417441 -151776223 + LTR50 LTR ERVL 293 787 -8 2203 107 0 0 chr1 130417462 130417753 -151775911 - AluSx SINE Alu -21 291 1 978 325 161 14 chr1 130417984 130418725 -151774939 + L2 LINE L2 1785 2634 -680 441 0 0 0 chr1 130418732 130418781 -151774883 + (CA)n Simple_repeat Simple_repeat 2 50 0 658 295 66 20 chr1 130418793 130419142 -151774522 - L1ME4a LINE L1 -219 5836 5472 302 214 0 37 chr1 130419853 130419943 -151773721 + L1M4 LINE L1 4177 4263 -1883 497 264 25 18 chr1 130419966 130420129 -151773535 - L1ME4a LINE L1 -1988 4092 3929 1035 203 88 0 chr1 130420158 130420375 -151773289 - MER46A DNA MER2_type 0 236 1 1919 241 81 107 chr1 130420377 130421566 -151772098 - L1ME4a LINE L1 -2176 3904 2768 1840 179 0 3 chr1 130421566 130421863 -151771801 - AluJb SINE Alu -16 296 1 1919 241 81 107 chr1 130421863 130422298 -151771366 - L1ME4a LINE L1 -3312 2768 2323 303 28 0 0 chr1 130422411 130422447 -151771217 + (CCCCCT)n Simple_repeat Simple_repeat 3 38 0 6264 65 19 60 chr1 130422447 130424390 -151769274 + SVA Other Other 58 1386 0 681 300 67 34 chr1 130424411 130424770 -151768894 - L1ME4a LINE L1 -3897 2364 2018 1873 149 0 20 chr1 130424770 130425071 -151768593 + AluJb SINE Alu 1 295 -17 189 0 0 0 chr1 130425072 130425093 -151768571 + (GA)n Simple_repeat Simple_repeat 2 22 0 681 300 67 34 chr1 130425093 130425374 -151768290 - L1ME4a LINE L1 -4242 2019 1701 1047 263 99 35 chr1 130425382 130426183 -151767481 - L1ME LINE L1 -4719 1361 513 380 230 44 0 chr1 130426272 130426385 -151767279 + L1ME1 LINE L1 1494 1611 -4815 1994 166 40 3 chr1 130426403 130426753 -151766911 + MER47A DNA MER2_type 3 365 -1 958 278 56 73 chr1 130426753 130427463 -151766201 + L1ME1 LINE L1 1500 2197 -4410 * 1856 247 47 12 chr1 130427437 130427948 -151765716 - L1M4 LINE L1 -2108 4038 3510 318 186 62 0 chr1 130428006 130428103 -151765561 + CT-rich Low_complexity Low_complexity 1 103 0 539 189 2 0 chr1 130428843 130428955 -151764709 + L1ME1 LINE L1 4345 4458 -1968 459 200 13 73 chr1 130429027 130429177 -151764487 + L1ME1 LINE L1 4468 4608 -1818 1044 80 0 0 chr1 130429177 130429315 -151764349 + AluSp/q SINE Alu 176 313 0 532 97 21 32 chr1 130429336 130429429 -151764235 + L1MB3 LINE L1 6081 6172 -11 3394 214 154 12 chr1 130429519 130431125 -151762539 + L1ME1 LINE L1 4596 6441 -5 366 363 21 32 chr1 130431178 130431368 -151762296 + MER5A DNA MER1_type 1 188 -1 188 261 30 113 chr1 130432785 130432988 -151760676 + L2 LINE L2 1872 2057 -1257 22 0 0 0 chr1 130433566 130433588 -151760076 + AT_rich Low_complexity Low_complexity 1 22 0 234 309 0 0 chr1 130433749 130433804 -151759860 + L2 LINE L2 3201 3255 -17 794 320 105 21 chr1 130433836 130434347 -151759317 + L2 LINE L2 2597 3159 -154 323 305 96 2 chr1 130434412 130434630 -151759034 + L1MEd LINE L1 1539 1809 -4873 625 244 182 27 chr1 130434740 130434998 -151758666 + L2 LINE L2 2979 3276 -37 758 164 0 0 chr1 130435144 130435260 -151758404 - AluJ SINE Alu -35 277 162 613 129 139 0 chr1 130435260 130435361 -151758303 - AluJ SINE Alu -185 127 13 243 0 0 0 chr1 130435451 130435478 -151758186 + (GA)n Simple_repeat Simple_repeat 1 27 0 245 29 0 29 chr1 130435615 130435650 -151758014 + (TA)n Simple_repeat Simple_repeat 2 35 0 265 274 46 55 chr1 130435806 130435984 -151757680 + L1MEd LINE L1 2504 2681 -3859 1296 239 227 20 chr1 130435984 130436641 -151757023 + LTR50 LTR ERVL 1 793 -2 265 274 46 55 chr1 130436641 130436681 -151756983 + L1MEd LINE L1 2681 2720 -3820 259 250 4 21 chr1 130436698 130436794 -151756870 + L1M4 LINE L1 4540 4637 -1509 443 224 40 20 chr1 130437036 130437188 -151756476 + L1M4 LINE L1 4961 5115 -1031 1153 282 109 15 chr1 130437201 130437595 -151756069 + MLT1J LTR MaLR 79 509 -2 196 260 353 0 chr1 130437872 130438022 -151755642 - MIR SINE MIR 0 262 60 23 0 0 0 chr1 130438140 130438163 -151755501 + AT_rich Low_complexity Low_complexity 1 23 0 895 138 0 0 chr1 130438163 130438293 -151755371 - MLT1A1 LTR MaLR -235 130 1 21 89 0 0 chr1 130438657 130438713 -151754951 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr1 130438927 130438956 -151754708 + AT_rich Low_complexity Low_complexity 1 29 0 201 250 0 0 chr1 130439136 130439176 -151754488 + polypurine Low_complexity Low_complexity 1 40 0 258 249 35 0 chr1 130439187 130439286 -151754378 + L1M4 LINE L1 3644 3747 -2399 1136 129 25 20 chr1 130439414 130439616 -151754048 + MER110A LTR ERV1 22 224 -244 309 256 67 0 chr1 130439623 130439713 -151753951 + MER110 LTR ERV1 381 476 -15 327 271 114 52 chr1 130440482 130440849 -151752815 + L1MD2 LINE L1 1179 3701 -2839 22 0 0 0 chr1 130440858 130440880 -151752784 + AT_rich Low_complexity Low_complexity 1 22 0 977 227 63 28 chr1 130441226 130442958 -151750706 - L1ME LINE L1 -522 5644 3786 1111 227 125 22 chr1 130442964 130443277 -151750387 - MER2 DNA MER2_type 0 345 1 406 247 0 54 chr1 130443277 130443409 -151750255 - L1ME LINE L1 -2376 3770 3646 3331 245 89 12 chr1 130443429 130444651 -151749013 + L1M4 LINE L1 2446 3761 -2385 852 167 33 61 chr1 130444867 130445047 -151748617 - FAM SINE Alu 0 175 1 335 290 99 89 chr1 130445118 130445411 -151748253 + MLT1K LTR MaLR 126 421 -167 244 315 121 20 chr1 130445537 130445686 -151747978 + L3 LINE CR1 1317 1480 -97 568 255 13 52 chr1 130448029 130448113 -151745551 - MER58A DNA MER1_type -194 147 70 2144 104 27 3 chr1 130448113 130448412 -151745252 - AluY SINE Alu -5 306 1 568 255 13 52 chr1 130448412 130448480 -151745184 - MER58A DNA MER1_type -271 70 1 313 257 137 33 chr1 130448635 130448818 -151744846 + MLT1K LTR MaLR 387 588 0 2229 249 46 9 chr1 130448901 130449580 -151744084 + L1MD2 LINE L1 4011 4714 -1826 360 216 0 14 chr1 130449587 130449661 -151744003 + MER68 LTR ERV1 490 562 0 21 57 0 0 chr1 130450549 130450584 -151743080 + AT_rich Low_complexity Low_complexity 1 35 0 209 263 13 26 chr1 130451308 130451384 -151742280 + A-rich Low_complexity Low_complexity 3 77 0 320 333 10 0 chr1 130451534 130451630 -151742034 - MER5B DNA MER1_type -80 98 2 2041 193 63 85 chr1 130451865 130452046 -151741618 + L1MD2 LINE L1 5920 6103 -650 1683 145 7 16 chr1 130452046 130452350 -151741314 + L1MB3 LINE L1 5883 6183 0 2041 193 63 85 chr1 130452350 130452759 -151740905 + L1MD2 LINE L1 6103 6497 -256 295 283 28 19 chr1 130453445 130453551 -151740113 + MLT1L LTR MaLR 350 456 -159 373 257 142 0 chr1 130454014 130454127 -151739537 - MER103 DNA DNA -33 133 5 474 304 80 84 chr1 130454177 130454493 -151739171 + L2 LINE L2 2587 2903 -369 2051 120 3 3 chr1 130454493 130454792 -151738872 - AluSx SINE Alu -13 299 1 474 304 80 84 chr1 130454792 130455131 -151738533 + L2 LINE L2 2903 3253 -19 2375 85 0 3 chr1 130455232 130455538 -151738126 + AluSq SINE Alu 1 305 -8 39 0 0 0 chr1 130455754 130455793 -151737871 + AT_rich Low_complexity Low_complexity 1 39 0 212 313 15 0 chr1 130456167 130456234 -151737430 + MIR SINE MIR 38 105 -103 789 234 198 46 chr1 130456988 130457356 -151736308 + MER77 LTR ERV1 175 598 -7 206 125 21 42 chr1 130457565 130457613 -151736051 + T-rich Low_complexity Low_complexity 5 51 0 537 256 100 56 chr1 130457650 130457900 -151735764 - MIR SINE MIR 0 262 2 417 292 8 0 chr1 130457942 130458062 -151735602 + MLT1J LTR MaLR 5 125 -386 250 175 0 35 chr1 130458073 130458130 -151735534 + MLT1J LTR MaLR 407 461 -50 238 282 88 46 chr1 130458220 130458436 -151735228 + L2 LINE L2 1618 1842 -1472 408 269 66 28 chr1 130458613 130458795 -151734869 + L1M4 LINE L1 3970 4158 -1988 2414 63 0 3 chr1 130458800 130459100 -151734564 + AluY SINE Alu 1 299 -12 221 364 100 0 chr1 130460838 130460948 -151732716 - L2 LINE L2 -270 3002 2882 194 372 51 70 chr1 130460990 130461501 -151732163 - L2 LINE L2 -547 2767 2267 236 217 33 0 chr1 130461527 130461587 -151732077 + L1ME1 LINE L1 6100 6161 -5 3544 213 91 112 chr1 130461591 130463483 -151730181 + L1ME LINE L1 2321 4173 -1973 1670 158 55 30 chr1 130463605 130463934 -151729730 + MER1B DNA MER1_type 1 337 0 26 30 0 0 chr1 130464294 130464327 -151729337 + AT_rich Low_complexity Low_complexity 1 33 0 1912 151 115 23 chr1 130464429 130464821 -151728843 + MSTA LTR MaLR 1 428 0 1191 159 59 159 chr1 130465105 130465514 -151728150 + MLT1A2 LTR MaLR 4 371 -3 2001 147 6 25 chr1 130465838 130466244 -151727420 - L1M3 LINE L1 -592 5591 5194 802 185 114 5 chr1 130466246 130466430 -151727234 - AluJo SINE Alu -5 307 104 378 299 28 36 chr1 130466669 130466873 -151726791 - MER20B DNA MER1_type -18 201 1 479 215 47 128 chr1 130468188 130468337 -151725327 + LTR50 LTR ERVL 25 161 -634 3624 228 68 43 chr1 130468397 130469275 -151724389 + L1MB5 LINE L1 2427 3282 -2892 852 191 19 0 chr1 130469275 130469432 -151724232 + FAM SINE Alu 14 173 -12 3624 228 68 43 chr1 130469432 130470328 -151723336 + L1MB5 LINE L1 3282 4155 -2019 7592 24 10 0 chr1 130470328 130471992 -151721672 + L1PA3 LINE L1 4482 6155 0 3624 228 68 43 chr1 130471992 130473716 -151719948 + L1MB5 LINE L1 4155 6174 0 678 280 156 24 chr1 130473749 130474718 -151718946 + L1ME LINE L1 4680 5789 -373 2177 70 0 7 chr1 130475049 130475351 -151718313 - AluY SINE Alu 0 312 13 245 284 103 17 chr1 130475529 130475645 -151718019 - L1ME LINE L1 -333 5788 5663 354 289 78 0 chr1 130475692 130475820 -151717844 - L1ME LINE L1 -452 5669 5532 214 287 23 0 chr1 130476040 130476127 -151717537 + (TA)n Simple_repeat Simple_repeat 1 89 0 2300 144 6 12 chr1 130476131 130476477 -151717187 + MER2 DNA MER2_type 1 344 0 2278 149 47 3 chr1 130476589 130476931 -151716733 - LTR18A LTR ERVL 0 357 1 2548 24 3 3 chr1 130476971 130477266 -151716398 + AluY SINE Alu 1 295 -16 274 321 36 0 chr1 130477506 130477590 -151716074 + L2 LINE L2 3225 3311 -2 24 0 0 0 chr1 130477662 130477686 -151715978 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr1 130477883 130477914 -151715750 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr1 130478226 130478256 -151715408 + AT_rich Low_complexity Low_complexity 1 30 0 384 345 30 24 chr1 130478415 130478580 -151715084 - MIR3 SINE MIR -24 184 19 1016 155 72 72 chr1 130478878 130479129 -151714535 - AluJo SINE Alu -22 290 40 232 172 155 0 chr1 130479197 130479255 -151714409 + MER41B LTR ERV1 481 547 -88 1488 176 35 64 chr1 130479388 130479701 -151713963 + AluJo SINE Alu 1 304 -8 455 207 24 0 chr1 130480067 130480149 -151713515 - MER33 DNA MER1_type -239 85 2 320 302 76 102 chr1 130480788 130481142 -151712522 + L2 LINE L2 2443 2787 -527 691 303 19 5 chr1 130481259 130481467 -151712197 - Charlie8 DNA MER1_type -2173 244 34 220 300 77 69 chr1 130481471 130481704 -151711960 + L2 LINE L2 2826 3060 -212 584 311 89 0 chr1 130482047 130482282 -151711382 - MIR SINE MIR 0 262 7 270 0 0 0 chr1 130482413 130482443 -151711221 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 130483844 130483866 -151709798 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 130485799 130485821 -151707843 + GC_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr1 130485823 130485868 -151707796 + (TCC)n Simple_repeat Simple_repeat 2 46 0 327 277 121 88 chr1 130485889 130486312 -151707352 - L1M2 LINE L1 -5945 904 468 316 252 129 102 chr1 130486045 130486457 -151707207 + L1M2 LINE L1 553 975 -5874 * 24 32 0 0 chr1 130488248 130488279 -151705385 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr1 130488539 130488578 -151705086 + AT_rich Low_complexity Low_complexity 1 39 0 312 91 0 0 chr1 130488710 130488754 -151704910 + (CA)n Simple_repeat Simple_repeat 2 45 0 350 277 56 122 chr1 130489116 130489437 -151704227 - L2 LINE L2 -18 3254 2955 282 241 51 66 chr1 130489742 130489879 -151703785 + MIR SINE MIR 30 211 -51 752 325 41 16 chr1 130490066 130490383 -151703281 + MLT1K LTR MaLR 134 458 -130 449 195 0 0 chr1 130490384 130490461 -151703203 - MER69 DNA AcHobo -1 2525 2449 2246 109 0 0 chr1 130490482 130490776 -151702888 + AluSc SINE Alu 1 294 -15 949 241 20 40 chr1 130490821 130491070 -151702594 - MER69 DNA AcHobo -2281 245 2 319 293 106 16 chr1 130491070 130491193 -151702471 + MLT1K LTR MaLR 455 588 0 239 198 148 74 chr1 130491592 130491673 -151701991 - L2 LINE L2 0 3313 3227 603 274 97 22 chr1 130491697 130491923 -151701741 + MIR SINE MIR 20 262 0 843 163 22 13 chr1 130491999 130492184 -151701480 + AluJo SINE Alu 1 230 -82 419 88 88 0 chr1 130492211 130492302 -151701362 + GA-rich Low_complexity Low_complexity 5 103 0 497 188 94 0 chr1 130492361 130492457 -151701207 + FRAM SINE Alu 59 163 -13 2376 90 3 0 chr1 130492458 130492757 -151700907 + AluSp SINE Alu 1 300 -13 269 109 22 0 chr1 130492765 130492811 -151700853 + GA-rich Low_complexity Low_complexity 2 48 0 204 222 0 0 chr1 130494026 130494071 -151699593 + A-rich Low_complexity Low_complexity 2 46 0 25 0 0 0 chr1 130494206 130494231 -151699433 + AT_rich Low_complexity Low_complexity 1 25 0 45102 39 1 2 chr1 130494456 130500618 -151693046 + L1PA3 LINE L1 3 6155 0 22 0 0 0 chr1 130500639 130500661 -151693003 + AT_rich Low_complexity Low_complexity 1 22 0 377 283 86 52 chr1 130500661 130500822 -151692842 + L1MEd LINE L1 1109 1263 -1354 1440 113 242 4 chr1 130500822 130501062 -151692602 + AluSq SINE Alu 1 297 -16 377 283 86 52 chr1 130501062 130501517 -151692147 + L1MEd LINE L1 1263 1762 -855 671 149 19 9 chr1 130501645 130501795 -151691869 - FLAM_A SINE Alu 0 161 11 2402 79 0 13 chr1 130501969 130502272 -151691392 + AluY SINE Alu 1 299 -12 374 286 156 28 chr1 130502282 130502410 -151691254 + L1MEd LINE L1 2202 2312 -3903 1786 141 69 0 chr1 130502410 130502686 -151690978 + AluJb SINE Alu 1 295 -17 374 286 156 28 chr1 130502686 130502950 -151690714 + L1MEd LINE L1 2312 2620 -3595 652 314 22 47 chr1 130502975 130503252 -151690412 - L2 LINE L2 -479 2835 2566 2115 107 17 3 chr1 130503695 130503986 -151689678 - AluSx SINE Alu -17 295 1 296 351 44 0 chr1 130506176 130506220 -151687444 + MER5B DNA MER1_type 1 42 -136 186 43 0 0 chr1 130506220 130506243 -151687421 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 296 351 44 0 chr1 130506243 130506312 -151687352 + MER5B DNA MER1_type 42 119 -59 604 289 36 7 chr1 130506764 130506950 -151686714 + MIR SINE MIR 3 193 -60 1703 98 0 0 chr1 130507105 130507330 -151686334 - AluSg/x SINE Alu -8 302 78 308 240 0 40 chr1 130507653 130507753 -151685911 + L2 LINE L2 2887 2982 -290 302 363 9 0 chr1 130507816 130507929 -151685735 + L2 LINE L2 3145 3258 -14 226 262 229 8 chr1 130507970 130508092 -151685572 + MIR SINE MIR 63 211 -51 1689 169 22 32 chr1 130508581 130508895 -151684769 - AluJb SINE Alu -1 311 1 208 288 249 58 chr1 130508916 130509121 -151684543 - MIR SINE MIR -16 246 3 311 211 0 42 chr1 130511548 130511619 -151682045 + MIR SINE MIR 90 157 -105 344 276 155 0 chr1 130512071 130512187 -151681477 + MIR SINE MIR 53 186 -76 24 67 0 0 chr1 130512224 130512269 -151681395 + AT_rich Low_complexity Low_complexity 1 45 0 1896 181 79 31 chr1 130513503 130513957 -151679707 - MER113 DNA MER1_type? -43 478 3 1802 166 25 0 chr1 130513991 130514275 -151679389 - AluSx SINE Alu -17 295 5 1828 85 0 0 chr1 130515063 130515298 -151678366 - LTR12 LTR ERV1 0 714 480 370 171 34 23 chr1 130515300 130515388 -151678276 - LTR30 LTR ERV1 -81 641 553 980 129 52 0 chr1 130515389 130515544 -151678120 - LTR12 LTR ERV1 -429 285 123 251 250 0 0 chr1 130515548 130515600 -151678064 - LTR30 LTR ERV1 -670 52 1 1585 162 38 11 chr1 130515726 130515840 -151677824 + AluJo SINE Alu 9 119 -193 2067 91 0 44 chr1 130515840 130516175 -151677489 + AluY SINE Alu 1 322 0 1585 162 38 11 chr1 130516175 130516324 -151677340 + AluJo SINE Alu 119 280 -32 287 282 0 0 chr1 130517275 130517353 -151676311 + MIR SINE MIR 185 262 0 2228 113 3 3 chr1 130517681 130517983 -151675681 + AluSx SINE Alu 1 302 -10 1997 131 41 0 chr1 130518707 130518998 -151674666 - AluSx SINE Alu -9 303 1 2423 76 0 3 chr1 130520190 130520494 -151673170 - AluSp SINE Alu -10 303 1 448 250 14 80 chr1 130520547 130520604 -151673060 - L1P LINE L1 -989 5157 5098 420 104 0 0 chr1 130520604 130520671 -151672993 + (TA)n Simple_repeat Simple_repeat 1 67 0 2066 141 3 0 chr1 130520671 130520970 -151672694 - AluSx SINE Alu -12 300 1 448 250 14 80 chr1 130520970 130521191 -151672473 - L1P LINE L1 -1046 5100 4902 308 282 60 26 chr1 130521320 130521437 -151672227 + MIR SINE MIR 86 206 -56 415 250 77 0 chr1 130521851 130521955 -151671709 + L2 LINE L2 3183 3294 -19 248 337 123 37 chr1 130522195 130522358 -151671306 - L2 LINE L2 -202 3070 2894 25 51 0 0 chr1 130522514 130522553 -151671111 + AT_rich Low_complexity Low_complexity 1 39 0 190 281 0 18 chr1 130522887 130522944 -151670720 - L2 LINE L2 -955 2359 2304 339 237 79 39 chr1 130523085 130523220 -151670444 + L1P LINE L1 4881 5027 -1119 203 147 0 0 chr1 130523248 130523282 -151670382 + (CA)n Simple_repeat Simple_repeat 2 35 0 793 217 76 2 chr1 130523294 130523507 -151670157 - L1MC4 LINE L1 -1363 6632 6439 267 69 0 69 chr1 130523660 130523718 -151669946 + (GGGAA)n Simple_repeat Simple_repeat 3 56 0 27 0 0 0 chr1 130523788 130523815 -151669849 + AT_rich Low_complexity Low_complexity 1 27 0 1691 174 10 32 chr1 130524201 130524511 -151669153 - AluJb SINE Alu -9 303 1 414 229 51 42 chr1 130524872 130524990 -151668674 + MIR SINE MIR 113 231 -31 313 98 0 59 chr1 130525673 130525724 -151667940 - MIR3 SINE MIR -50 158 111 2572 65 0 0 chr1 130526498 130526806 -151666858 - AluY SINE Alu -3 308 1 2184 113 10 0 chr1 130526811 130527102 -151666562 - AluSx SINE Alu -18 294 1 359 281 47 59 chr1 130527274 130527527 -151666137 - L1ME4a LINE L1 -219 5902 5653 226 310 106 35 chr1 130527800 130528055 -151665609 - L2 LINE L2 -1173 2141 1869 2683 131 55 24 chr1 130528172 130528592 -151665072 - Tigger2a DNA MER2_type 0 434 2 1033 287 73 40 chr1 130528609 130529103 -151664561 - L2 LINE L2 0 3313 2804 718 297 90 31 chr1 130529303 130529626 -151664038 + MLT1K LTR MaLR 10 351 -237 358 248 13 74 chr1 130529768 130529917 -151663747 + MLT1K LTR MaLR 449 588 0 523 182 127 0 chr1 130530110 130530220 -151663444 + MER63 DNA MER1_type 1 750 -86 337 299 24 24 chr1 130530511 130530638 -151663026 + MIR SINE MIR 84 210 -52 410 228 98 32 chr1 130530747 130530870 -151662794 + L2 LINE L2 3139 3269 -3 4383 129 19 7 chr1 130531695 130532377 -151661287 - MER39 LTR ERV1 -15 692 3 527 196 37 0 chr1 130532380 130532487 -151661177 - MIR SINE MIR -101 161 51 875 213 63 24 chr1 130532805 130533012 -151660652 - MIR SINE MIR -20 242 28 437 101 0 43 chr1 130533721 130533790 -151659874 + L2 LINE L2 3206 3271 -1 183 42 0 0 chr1 130534193 130534217 -151659447 + (T)n Simple_repeat Simple_repeat 1 24 0 456 191 0 22 chr1 130534792 130534881 -151658783 - MIR SINE MIR -13 249 163 3103 143 70 0 chr1 130534881 130535413 -151658251 + L1MB5 LINE L1 5570 6138 -36 460 151 48 8 chr1 130535607 130535713 -151657951 + L1MB4 LINE L1 6045 6150 -30 * 4590 43 4 2 chr1 130535709 130536269 -151657395 - L1PA4 LINE L1 -2097 4049 3489 11893 31 7 1 chr1 130536269 130538358 -151655306 + L1PA4 LINE L1 4055 6152 -3 190 250 29 29 chr1 130538402 130538470 -151655194 - MIR SINE MIR -86 176 109 610 246 5 59 chr1 130538490 130538677 -151654987 - MER69A DNA AcHobo 0 177 1 2084 204 84 18 chr1 130538685 130539244 -151654420 + L1M4 LINE L1 4350 4945 -1201 219 88 0 0 chr1 130539684 130539718 -151653946 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2215 65 32 0 chr1 130539720 130539998 -151653666 - AluY SINE Alu -24 287 1 445 222 15 82 chr1 130540020 130540155 -151653509 + MIR SINE MIR 81 206 -56 372 280 92 50 chr1 130540458 130540719 -151652945 - L2 LINE L2 0 3272 3001 351 376 16 21 chr1 130540825 130541011 -151652653 - L2 LINE L2 -654 2660 2476 * 431 319 35 6 chr1 130541010 130541179 -151652485 + MIR SINE MIR 57 230 -32 3198 69 2 2 chr1 130541756 130542179 -151651485 + L1P LINE L1 4876 5298 -848 2077 81 3 55 chr1 130542825 130543134 -151650530 - AluSx SINE Alu -19 293 1 2034 125 11 0 chr1 130543535 130543870 -151649794 - AluSx SINE Alu 0 338 1 292 301 139 36 chr1 130544098 130544264 -151649400 - MIR SINE MIR -60 202 20 217 346 88 60 chr1 130544696 130545233 -151648431 + L2 LINE L2 2091 2642 -672 209 323 52 78 chr1 130545377 130545569 -151648095 + L2 LINE L2 2463 2649 -665 329 285 68 21 chr1 130545788 130546023 -151647641 - L1M4 LINE L1 -1570 4640 4395 186 43 0 0 chr1 130546193 130546216 -151647448 + (TG)n Simple_repeat Simple_repeat 1 23 0 545 251 51 30 chr1 130546247 130546581 -151647083 - L1M4 LINE L1 -2669 3541 3201 318 324 62 70 chr1 130546618 130546740 -151646924 - HAL1 LINE L1 -841 1666 1545 2219 98 0 41 chr1 130546740 130547056 -151646608 + AluSg SINE Alu 2 304 -6 318 324 62 70 chr1 130547056 130547174 -151646490 - HAL1 LINE L1 -962 1545 1428 417 233 164 27 chr1 130547330 130547476 -151646188 - MLT1H LTR MaLR -2 547 382 236 238 0 0 chr1 130547628 130547670 -151645994 - MLT1I LTR MaLR -272 137 96 300 320 175 21 chr1 130547841 130548075 -151645589 - L1M4 LINE L1 -4594 1547 1278 2360 91 0 13 chr1 130548116 130548424 -151645240 + AluSq SINE Alu 1 304 -9 198 0 0 0 chr1 130548492 130548514 -151645150 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2129 119 0 0 chr1 130548514 130548799 -151644865 - AluSx SINE Alu -27 285 1 1126 172 0 0 chr1 130549770 130549956 -151643708 + L1MC1 LINE L1 6066 6251 -82 740 249 65 53 chr1 130550230 130550475 -151643189 - MIR SINE MIR -11 251 4 238 215 0 89 chr1 130550480 130550559 -151643105 - L1ME4a LINE L1 -104 6017 5946 646 255 99 10 chr1 130551697 130551889 -151641775 - MIR SINE MIR -6 256 48 1983 130 14 7 chr1 130552042 130552335 -151641329 + AluSx SINE Alu 1 295 -17 5288 64 13 10 chr1 130552337 130553010 -151640654 + SVA Other Other 712 1386 0 324 0 0 0 chr1 130553685 130553721 -151639943 + (CA)n Simple_repeat Simple_repeat 2 37 0 2010 127 38 0 chr1 130553721 130554013 -151639651 + AluSp SINE Alu 1 303 -10 339 25 0 0 chr1 130554029 130554069 -151639595 + (CA)n Simple_repeat Simple_repeat 2 41 0 426 348 94 11 chr1 130555090 130555271 -151638393 - MER91A DNA MER1_type 0 196 1 321 241 58 136 chr1 130555566 130555651 -151638013 - L1MC4a LINE L1 -302 5819 5840 2339 94 13 0 chr1 130555651 130555960 -151637704 - AluSp SINE Alu 0 313 1 321 241 58 136 chr1 130555960 130556103 -151637561 - L1MC4a LINE L1 -280 5841 5688 2101 182 24 79 chr1 130558024 130558349 -151635315 - MLT1D LTR MaLR 0 505 219 2342 98 0 0 chr1 130558349 130558656 -151635008 - AluSc SINE Alu -2 307 1 2101 182 24 79 chr1 130558656 130558864 -151634800 - MLT1D LTR MaLR -286 219 1 2126 122 14 0 chr1 130559035 130559330 -151634334 - AluSx SINE Alu -13 299 1 285 319 82 55 chr1 130560192 130560374 -151633290 + L2 LINE L2 311 497 -2817 879 314 104 26 chr1 130560518 130561018 -151632646 + L2 LINE L2 1860 2398 -916 1106 189 0 0 chr1 130561069 130561238 -151632426 - FAM SINE Alu -6 169 1 2118 126 3 3 chr1 130561292 130561601 -151632063 + AluSx SINE Alu 1 309 -3 1520 251 70 32 chr1 130561612 130562110 -151631554 - L1ME3A LINE L1 -5 6165 5649 402 300 0 29 chr1 130562160 130562300 -151631364 + L3 LINE CR1 723 858 -719 275 261 54 0 chr1 130562303 130562395 -151631269 + L1ME LINE L1 5711 5807 -314 27 49 0 0 chr1 130562587 130562628 -151631036 + AT_rich Low_complexity Low_complexity 1 41 0 339 372 89 11 chr1 130563538 130563718 -151629946 - L1ME3A LINE L1 -15 6155 5962 694 208 8 0 chr1 130563800 130563925 -151629739 + FLAM_A SINE Alu 1 126 -7 1477 264 51 51 chr1 130563928 130564878 -151628786 - L1ME3A LINE L1 -243 5927 4961 202 167 0 56 chr1 130565035 130565089 -151628575 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1016 127 0 13 chr1 130565229 130565402 -151628262 - AluSg/x SINE Alu 0 305 135 396 0 0 0 chr1 130565402 130565446 -151628218 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 2271 89 4 0 chr1 130565446 130565727 -151627937 - AluSp SINE Alu -31 282 1 519 228 32 24 chr1 130565813 130565936 -151627728 + L2 LINE L2 3190 3313 0 895 296 33 4 chr1 130566003 130566243 -151627421 - MIR SINE MIR 0 262 16 910 272 43 0 chr1 130566327 130566562 -151627102 - MIR SINE MIR -16 246 2 463 244 161 92 chr1 130566610 130566946 -151626718 + MLT1K LTR MaLR 230 588 0 2493 81 0 0 chr1 130567196 130567503 -151626161 - AluSq SINE Alu -6 307 1 272 304 0 29 chr1 130567653 130567722 -151625942 + MIR3 SINE MIR 110 176 -32 506 256 22 0 chr1 130567977 130568114 -151625550 - MER103 DNA DNA -25 141 2 621 204 9 0 chr1 130569175 130569283 -151624381 + FLAM_C SINE Alu 2 110 -33 261 0 0 0 chr1 130569287 130569316 -151624348 + (TAA)n Simple_repeat Simple_repeat 2 30 0 439 266 42 14 chr1 130570615 130570758 -151622906 - LTR67 LTR ERVL -11 546 400 631 287 96 19 chr1 130570761 130571200 -151622464 - L1MC5 LINE L1 -1051 6991 6505 362 121 17 17 chr1 130571221 130571279 -151622385 + MLT1B LTR MaLR 1 58 -332 1213 191 82 73 chr1 130571287 130571628 -151622036 - MER2 DNA MER2_type -1 344 1 575 178 0 9 chr1 130571628 130571729 -151621935 + MLT1B LTR MaLR 76 175 -215 827 166 0 22 chr1 130571737 130571876 -151621788 + FLAM_C SINE Alu 3 138 -5 1179 186 5 0 chr1 130571924 130572118 -151621546 + MLT1B LTR MaLR 196 390 0 964 77 8 0 chr1 130572291 130572421 -151621243 - AluY SINE Alu -6 305 175 331 250 81 34 chr1 130572438 130572586 -151621078 - L1MC4a LINE L1 -1534 6274 6120 2405 91 0 0 chr1 130572731 130573028 -151620636 - AluSx SINE Alu -15 297 1 629 315 38 17 chr1 130573110 130573456 -151620208 - L1MEd LINE L1 -4862 1257 905 2344 99 0 10 chr1 130573470 130573783 -151619881 + AluSg SINE Alu 1 310 0 855 161 0 0 chr1 130573832 130573969 -151619695 - FAM SINE Alu -27 158 22 23 33 0 0 chr1 130573969 130573999 -151619665 + AT_rich Low_complexity Low_complexity 1 30 0 1039 161 23 69 chr1 130574177 130574395 -151619269 - MER58C DNA MER1_type -4 211 4 503 304 108 30 chr1 130574453 130574749 -151618915 - L1MEd LINE L1 -5550 569 251 401 341 49 19 chr1 130574985 130575293 -151618371 - L1 LINE L1 -2196 3950 3634 592 306 118 47 chr1 130575565 130575905 -151617759 + L2 LINE L2 2950 3313 0 2174 128 0 3 chr1 130575918 130576224 -151617440 - AluSx SINE Alu -7 305 1 2707 196 19 14 chr1 130577290 130577806 -151615858 + MLT2B1 LTR ERVL 2 520 0 385 250 192 6 chr1 130578249 130578405 -151615259 + LTR16A LTR ERVL 33 217 -233 189 0 0 0 chr1 130578417 130578438 -151615226 + (TA)n Simple_repeat Simple_repeat 1 21 0 1544 174 4 30 chr1 130578446 130578716 -151614948 - AluJo SINE Alu -49 263 1 1803 186 76 33 chr1 130578716 130578896 -151614768 - MER67C LTR ERV1 -5 705 534 1567 205 48 62 chr1 130578896 130578936 -151614728 - MSTD LTR MaLR -2 394 355 2382 100 0 3 chr1 130578936 130579247 -151614417 + AluSx SINE Alu 3 312 0 1567 205 48 62 chr1 130579247 130579606 -151614058 - MSTD LTR MaLR -41 355 1 1803 186 76 33 chr1 130579606 130579822 -151613842 - MER67C LTR ERV1 -176 534 292 2653 170 79 34 chr1 130579823 130580382 -151613282 - MER34C LTR ERV1 -1 584 1 714 221 127 58 chr1 130580382 130580655 -151613009 - MER67C LTR ERV1 -415 295 4 3929 162 38 14 chr1 130580805 130581460 -151612204 + LTR51 LTR ERV1 1 671 0 318 83 375 14 chr1 130581623 130581695 -151611969 + MER4A LTR ERV1 1 98 -566 1807 146 6 47 chr1 130581695 130582055 -151611609 + MER4A LTR ERV1 261 664 0 746 264 41 21 chr1 130582055 130582297 -151611367 - MIR SINE MIR -4 258 12 695 157 57 7 chr1 130582951 130583091 -151610573 + LTR29 LTR ERV1 1 147 -475 928 135 0 0 chr1 130583091 130583224 -151610440 + AluSq/x SINE Alu 1 133 -180 860 168 97 48 chr1 130583278 130583506 -151610158 + LTR29 LTR ERV1 316 549 -46 1995 97 16 66 chr1 130583506 130583825 -151609839 - AluSx SINE Alu -9 303 1 860 168 97 48 chr1 130583825 130583875 -151609789 + LTR29 LTR ERV1 549 595 0 276 327 168 14 chr1 130584512 130584726 -151608938 - MIR SINE MIR -8 254 8 736 235 74 39 chr1 130584727 130585012 -151608652 + MER102a DNA MER1_type 1 295 -35 268 326 92 49 chr1 130585217 130585401 -151608263 + MIR3 SINE MIR 3 194 -14 440 229 0 38 chr1 130586383 130586488 -151607176 - MER5A DNA MER1_type -80 109 9 1014 177 10 61 chr1 130586505 130586638 -151607026 + MER5A DNA MER1_type 2 123 -66 2304 103 0 0 chr1 130586638 130586939 -151606725 - AluSq SINE Alu -12 301 1 1014 177 10 61 chr1 130586939 130587003 -151606661 + MER5A DNA MER1_type 123 189 0 1634 212 44 75 chr1 130587013 130587495 -151606169 + MLT1C LTR MaLR 1 467 0 402 315 39 8 chr1 130587694 130587821 -151605843 - L2 LINE L2 -14 3299 3169 387 237 186 0 chr1 130587873 130587991 -151605673 - MER91C DNA MER1_type 0 140 1 2230 107 0 3 chr1 130588023 130588344 -151605320 - AluSc SINE Alu 0 309 1 23 0 0 0 chr1 130588347 130588370 -151605294 + AT_rich Low_complexity Low_complexity 1 23 0 354 374 24 16 chr1 130588384 130588507 -151605157 - L2 LINE L2 -194 3078 2955 2527 78 0 0 chr1 130588969 130589278 -151604386 - AluSg SINE Alu -1 309 1 3944 160 70 3 chr1 130589583 130590244 -151603420 - MER50 LTR ERV1 -23 711 7 3817 151 24 47 chr1 130590461 130591168 -151602496 + LTR8 LTR ERV1 1 691 0 1518 47 5 26 chr1 130591277 130591469 -151602195 + L1PA6 LINE L1 5967 6154 0 228 266 194 43 chr1 130591670 130591809 -151601855 + MIR SINE MIR 59 218 -44 893 208 112 122 chr1 130592213 130592785 -151600879 - MER34B LTR ERV1 0 542 1 264 303 71 0 chr1 130593052 130593151 -151600513 - L2 LINE L2 -5 3308 3203 2666 119 16 3 chr1 130593171 130593541 -151600123 + THE1C LTR MaLR 1 375 0 10787 118 40 7 chr1 130593541 130595070 -151598594 + THE1C-int LTR MaLR 1 1580 0 2471 110 21 21 chr1 130595070 130595443 -151598221 + THE1C LTR MaLR 1 373 -2 2061 119 32 0 chr1 130596066 130596351 -151597313 - AluSg SINE Alu -16 294 1 766 290 83 46 chr1 130596519 130596999 -151596665 + MLT1J LTR MaLR 14 511 0 426 273 87 48 chr1 130597622 130598048 -151595616 + L1ME4a LINE L1 5637 6089 -32 930 256 50 8 chr1 130598125 130598367 -151595297 - MIR SINE MIR 0 262 11 260 261 114 34 chr1 130598897 130598985 -151594679 + L2 LINE L2 3151 3245 -27 2241 121 3 10 chr1 130599073 130599387 -151594277 + AluSx SINE Alu 1 312 0 271 283 120 22 chr1 130599442 130599534 -151594130 - L2 LINE L2 -3 3269 3169 2357 98 0 10 chr1 130599626 130599933 -151593731 - AluSx SINE Alu -8 304 1 2459 62 0 20 chr1 130600254 130600560 -151593104 + AluY SINE Alu 1 300 -11 2381 83 0 0 chr1 130600560 130600861 -151592803 + AluSg SINE Alu 1 302 -8 2067 126 3 43 chr1 130601091 130601416 -151592248 + AluSx SINE Alu 1 312 0 241 203 266 25 chr1 130601479 130601558 -151592106 + MIR SINE MIR 1 98 -164 416 269 37 0 chr1 130601780 130601888 -151591776 + MIR SINE MIR 46 157 -105 3447 164 64 14 chr1 130601888 130602480 -151591184 + LTR26E LTR ERV1 1 622 0 197 294 141 0 chr1 130602546 130602631 -151591033 + MIR SINE MIR 166 262 0 2741 159 17 2 chr1 130602774 130603194 -151590470 + MSTB LTR MaLR 1 426 0 1902 128 6 10 chr1 130603782 130604128 -151589536 - MER4A LTR ERV1 0 664 262 569 93 139 0 chr1 130604129 130604215 -151589449 - MER4A LTR ERV1 -566 98 1 28 86 0 0 chr1 130604522 130604592 -151589072 + AT_rich Low_complexity Low_complexity 1 70 0 2119 139 3 0 chr1 130604682 130604984 -151588680 - AluY SINE Alu -8 303 1 810 242 8 76 chr1 130605045 130605309 -151588355 - L1MC4a LINE L1 -1871 5937 5692 216 0 0 0 chr1 130605312 130605336 -151588328 + (T)n Simple_repeat Simple_repeat 1 24 0 514 244 179 32 chr1 130606194 130606440 -151587224 - L3 LINE CR1 -109 1468 1187 7548 109 4 4 chr1 130606853 130607891 -151585773 + THE1-int LTR MaLR 258 1295 -285 334 200 0 15 chr1 130607992 130608057 -151585607 + THE1C LTR MaLR 312 375 0 12803 88 3 0 chr1 130608059 130609631 -151584033 + THE1B-int LTR MaLR 4 1580 0 2382 113 48 28 chr1 130609633 130609988 -151583676 + THE1B LTR MaLR 3 364 0 10423 122 60 5 chr1 130609988 130610106 -151583558 + L1PB1 LINE L1 959 1069 -5793 3887 62 8 8 chr1 130610106 130610588 -151583076 - L1PA5 LINE L1 0 6154 5673 10423 122 60 5 chr1 130610588 130612329 -151581335 + L1PB1 LINE L1 1069 3109 -3753 * 44458 44 2 3 chr1 130612324 130618484 -151575180 + L1PA4 LINE L1 1 6154 -1 13569 174 17 9 chr1 130618504 130622255 -151571409 + L1PB1 LINE L1 3092 6867 0 1072 288 75 60 chr1 130622238 130623238 -151570426 + L1M4 LINE L1 3320 4334 -1812 * 703 294 97 36 chr1 130623394 130623837 -151569827 - L2 LINE L2 -1543 1771 1302 226 226 19 0 chr1 130623866 130623919 -151569745 + L2 LINE L2 3217 3270 -2 2363 170 13 31 chr1 130624061 130624519 -151569145 + MER65C LTR ERV1 3 452 -9 281 198 0 86 chr1 130624525 130624606 -151569058 + MIR SINE MIR 113 186 -76 1212 240 93 29 chr1 130624608 130625092 -151568572 + LTR33 LTR ERVL 7 521 0 3729 183 56 76 chr1 130627034 130629011 -151564653 - L1ME1 LINE L1 -46 6120 4189 1095 192 14 23 chr1 130629011 130629230 -151564434 - AluJo SINE Alu -2 310 94 1789 239 14 23 chr1 130629232 130629747 -151563917 - L1ME1 LINE L1 -1948 4198 3689 423 242 14 153 chr1 130629984 130630265 -151563399 + HAL1 LINE L1 840 1081 -1426 2004 141 47 26 chr1 130630309 130630691 -151562973 - MLT1B LTR MaLR 0 390 1 345 256 159 6 chr1 130630828 130631004 -151562660 + HAL1 LINE L1 2244 2446 -61 189 0 0 0 chr1 130631069 130631090 -151562574 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 219 235 73 15 chr1 130631294 130631362 -151562302 + L2 LINE L2 3230 3301 -12 25 0 0 0 chr1 130632980 130633005 -151560659 + AT_rich Low_complexity Low_complexity 1 25 0 12867 189 39 16 chr1 130633006 130634722 -151558942 - L1PB1 LINE L1 -2 6865 5191 198 0 0 0 chr1 130634722 130634744 -151558920 + (TATG)n Simple_repeat Simple_repeat 2 23 0 12867 189 39 16 chr1 130634744 130638533 -151555131 - L1PB1 LINE L1 -1676 5191 1093 4115 174 63 18 chr1 130638534 130639508 -151554156 - L1PB1 LINE L1 -5815 1048 31 476 321 78 13 chr1 130639568 130640029 -151553635 - L1M4 LINE L1 -1603 4543 4053 2937 107 19 5 chr1 130640033 130640454 -151553210 + MSTA LTR MaLR 1 427 -1 2113 125 0 3 chr1 130640507 130640866 -151552798 + AluSg SINE Alu 1 358 0 1833 317 111 15 chr1 130640866 130641840 -151551824 + L2 LINE L2 1879 2945 -369 306 311 136 0 chr1 130641839 130641942 -151551722 + L2 LINE L2 3156 3272 0 * 280 263 101 50 chr1 130641953 130642052 -151551612 + L2 LINE L2 2956 3059 -213 2051 117 30 7 chr1 130642393 130642693 -151550971 - AluSx SINE Alu -5 307 1 235 243 0 75 chr1 130642747 130642773 -151550891 + LTR67 LTR ERVL 459 557 0 304 222 0 25 chr1 130642773 130642854 -151550810 + MLT1K LTR MaLR 510 588 0 372 279 176 30 chr1 130642856 130643089 -151550575 + L2 LINE L2 3047 3313 0 526 308 44 33 chr1 130643109 130643476 -151550188 - L2 LINE L2 -814 2500 2130 328 293 121 0 chr1 130643762 130643919 -151549745 - MIR SINE MIR -31 231 56 724 324 47 61 chr1 130644987 130645431 -151548233 - L2 LINE L2 -8 3264 2827 1165 222 5 0 chr1 130645467 130645688 -151547976 - MER58A DNA MER1_type -2 222 1 587 198 0 0 chr1 130645717 130645823 -151547841 - MER81 DNA DNA -5 109 4 211 324 14 14 chr1 130645825 130645896 -151547768 + MER5A DNA MER1_type 50 120 -69 768 279 62 0 chr1 130646961 130647205 -151546459 + MIR SINE MIR 2 260 -2 384 326 93 63 chr1 130648139 130648722 -151544942 - L2 LINE L2 -193 3079 2475 314 320 187 19 chr1 130648762 130649237 -151544427 - L2 LINE L2 -1139 2175 1621 230 271 109 83 chr1 130650199 130650501 -151543163 - L2 LINE L2 0 3272 2963 269 241 57 50 chr1 130650710 130650851 -151542813 - MIR3 SINE MIR -34 174 33 198 0 0 0 chr1 130651322 130651344 -151542320 + (A)n Simple_repeat Simple_repeat 1 22 0 298 330 29 0 chr1 130651740 130651843 -151541821 - MIR SINE MIR -92 170 65 4855 104 3 10 chr1 130652537 130653261 -151540403 + Tigger1 DNA MER2_type 586 1304 -1114 4513 210 50 2 chr1 130653261 130654477 -151539187 - L1 LINE L1 -2672 3362 2089 2128 128 3 0 chr1 130654488 130654778 -151538886 + AluSx SINE Alu 1 291 -21 1747 210 0 0 chr1 130654778 130655073 -151538591 - AluJo SINE Alu -15 297 3 2594 183 2 2 chr1 130655143 130655613 -151538051 - L1PA16 LINE L1 -17 6149 5680 25797 66 6 1 chr1 130655636 130660027 -151533637 - L1PA6 LINE L1 -11 6143 1734 35567 90 12 7 chr1 130660128 130665752 -151527912 - L1PA16 LINE L1 -495 5659 11 3279 258 44 37 chr1 130665761 130668091 -151525573 - L1 LINE L1 -3960 2074 41 260 26 0 26 chr1 130668091 130668129 -151525535 + (TG)n Simple_repeat Simple_repeat 2 38 0 3279 258 44 37 chr1 130668129 130668167 -151525497 - L1 LINE L1 -5993 41 5 301 225 303 0 chr1 130668167 130668256 -151525408 - L2 LINE L2 -598 2716 2601 1006 259 75 3 chr1 130668257 130668550 -151525114 + MER69 DNA AcHobo 8 321 -905 314 344 8 8 chr1 130668683 130668808 -151524856 + L2 LINE L2 2619 2743 -571 3304 259 23 12 chr1 130669456 130670489 -151523175 + L1ME1 LINE L1 3220 4264 -1882 2279 98 15 6 chr1 130670832 130671160 -151522504 + L1PA10 LINE L1 5833 6163 -5 1794 202 47 32 chr1 130671241 130671535 -151522129 + L1ME1 LINE L1 4469 4757 -1389 1929 149 0 7 chr1 130671535 130671831 -151521833 + AluSx SINE Alu 1 294 -18 1794 202 47 32 chr1 130671831 130672168 -151521496 + L1ME1 LINE L1 4757 5165 -981 2720 198 64 16 chr1 130674574 130675339 -151518325 + L1ME1 LINE L1 5165 5962 -204 252 111 0 0 chr1 130675342 130675378 -151518286 + MER5A DNA MER1_type 41 76 -113 301 204 0 0 chr1 130675921 130675970 -151517694 - L2 LINE L2 -17 3255 3207 1553 210 77 24 chr1 130676320 130676696 -151516968 - MSTD LTR MaLR 0 396 1 185 366 52 22 chr1 130679130 130679264 -151514400 - L2 LINE L2 -209 3063 2926 200 364 91 0 chr1 130680106 130680172 -151513492 - L3 LINE CR1 -26 1551 1480 294 346 40 0 chr1 130680196 130680297 -151513367 + L2 LINE L2 3204 3308 -5 187 286 0 0 chr1 130680302 130680351 -151513313 - L3 LINE CR1 -127 1450 1402 4121 216 55 17 chr1 130680615 130681159 -151512505 - L1M4 LINE L1 -1488 4658 4136 1948 161 0 3 chr1 130681159 130681451 -151512213 - AluSx SINE Alu -21 291 1 4121 216 55 17 chr1 130681451 130682006 -151511658 - L1M4 LINE L1 -2010 4136 3517 589 260 95 46 chr1 130682018 130682789 -151510875 - L1MCc LINE L1 -4789 2152 1173 638 342 168 24 chr1 130684209 130684979 -151508685 + L2 LINE L2 1844 2768 -546 2049 118 17 0 chr1 130684979 130685275 -151508389 + AluY SINE Alu 1 301 -10 638 342 168 24 chr1 130685275 130685421 -151508243 + L2 LINE L2 2768 2892 -422 1357 245 16 76 chr1 130685495 130686000 -151507664 + L2 LINE L2 2750 3216 -97 5157 159 29 22 chr1 130686105 130686949 -151506715 - L1MB3 LINE L1 -3 6180 5326 3019 136 106 2 chr1 130686949 130687420 -151506244 + MLT2B1 LTR ERVL 1 520 0 5157 159 29 22 chr1 130687420 130687849 -151505815 - L1MB3 LINE L1 -857 5326 4902 2299 140 138 5 chr1 130688490 130688868 -151504796 - MSTA LTR MaLR 0 428 1 550 262 60 68 chr1 130691746 130691994 -151501670 + Charlie8 DNA MER1_type 1 246 -2171 647 266 84 13 chr1 130692016 130692253 -151501411 + MIR SINE MIR 9 262 0 325 218 249 73 chr1 130692286 130692451 -151501213 - MIR SINE MIR -64 198 5 267 173 0 0 chr1 130692571 130692623 -151501041 + Charlie8 DNA MER1_type 2365 2416 -1 796 184 18 6 chr1 130692765 130692928 -151500736 + MER5A DNA MER1_type 25 189 0 2207 92 17 0 chr1 130692941 130693233 -151500431 - AluSp SINE Alu -16 297 1 270 167 83 0 chr1 130693677 130693737 -151499927 - MLT1K LTR MaLR -7 581 517 378 280 7 60 chr1 130694263 130694413 -151499251 - L2 LINE L2 -527 2787 2646 16718 108 16 27 chr1 130694440 130696823 -151496841 - Tigger1 DNA MER2_type 0 2418 62 2143 133 7 0 chr1 130696823 130697123 -151496541 + AluSx SINE Alu 1 302 -10 16718 108 16 27 chr1 130697123 130697185 -151496479 - Tigger1 DNA MER2_type -2356 62 1 2033 141 0 0 chr1 130699511 130699925 -151493739 + AluJb SINE Alu 1 414 0 2726 144 12 2 chr1 130699935 130700359 -151493305 + L1MB2 LINE L1 5739 6166 -5 276 203 29 0 chr1 130700369 130700438 -151493226 + L1MA10 LINE L1 6257 6327 -7 283 273 83 25 chr1 130700801 130700922 -151492742 - MIR SINE MIR -48 214 87 2292 180 64 0 chr1 130700947 130701353 -151492311 - MSTB1 LTR MaLR 0 432 1 390 319 0 63 chr1 130701355 130701546 -151492118 - LTR33 LTR ERVL -13 508 330 1664 171 4 0 chr1 130701625 130701889 -151491775 + AluSx SINE Alu 9 273 -39 288 0 0 0 chr1 130701890 130701922 -151491742 + (GA)n Simple_repeat Simple_repeat 1 32 0 273 98 0 0 chr1 130702511 130702552 -151491112 + (GA)n Simple_repeat Simple_repeat 2 42 0 3533 267 117 39 chr1 130702844 130705220 -151488444 + L1ME LINE L1 2651 5211 -935 426 316 84 0 chr1 130705217 130705407 -151488257 + L1ME LINE L1 5532 5737 -433 * 648 338 84 4 chr1 130705417 130705692 -151487972 + L3 LINE CR1 1279 1575 -2 357 281 180 54 chr1 130707135 130707469 -151486195 + L2 LINE L2 2897 3272 0 29 28 0 0 chr1 130708064 130708100 -151485564 + AT_rich Low_complexity Low_complexity 1 36 0 871 185 6 13 chr1 130708708 130708865 -151484799 - MER58B DNA MER1_type -11 330 175 2225 155 52 3 chr1 130709943 130710291 -151483373 + MLT1A1 LTR MaLR 1 365 0 590 333 0 18 chr1 130710324 130710546 -151483118 + MIR SINE MIR 3 220 -42 784 265 145 25 chr1 130711004 130711321 -151482343 - LTR18A LTR ERVL 0 357 3 39325 154 12 8 chr1 130711324 130717344 -151476320 - HERVL18 LTR ERVL 0 6047 1 932 251 157 38 chr1 130717350 130717669 -151475995 - LTR18A LTR ERVL 0 357 1 439 312 0 43 chr1 130717670 130717811 -151475853 + MER5A DNA MER1_type 55 189 0 312 237 116 87 chr1 130717826 130717999 -151475665 - MER5B DNA MER1_type 0 178 1 505 233 167 13 chr1 130718007 130718157 -151475507 + MER5B DNA MER1_type 1 173 -5 1085 237 0 0 chr1 130718170 130718368 -151475296 - MER58A DNA MER1_type 0 224 27 974 194 155 0 chr1 130718388 130718666 -151474998 - MER5C DNA MER1_type 0 324 4 306 316 148 24 chr1 130718969 130719178 -151474486 + MIR SINE MIR 28 262 0 551 270 118 28 chr1 130719189 130719421 -151474243 + MIR SINE MIR 8 262 0 685 139 9 0 chr1 130719435 130719550 -151474114 - L1MB7 LINE L1 -16 6168 6053 394 291 107 71 chr1 130719963 130720327 -151473337 + MLT1J1 LTR MaLR 66 442 -4 745 300 133 13 chr1 130722548 130722925 -151470739 + LTR16A LTR ERVL 23 444 -6 978 204 5 31 chr1 130723273 130723464 -151470200 - MER5A DNA MER1_type 0 189 4 254 304 0 13 chr1 130724299 130724378 -151469286 - MIR3 SINE MIR -7 201 124 427 308 55 16 chr1 130724447 130724629 -151469035 + L2 LINE L2 2476 2664 -650 1130 174 58 0 chr1 130724629 130724819 -151468845 - MLT1A1 LTR MaLR 0 365 165 810 177 7 35 chr1 130724821 130724962 -151468702 + AluJb SINE Alu 1 137 -175 958 141 61 6 chr1 130724962 130725125 -151468539 - MLT1A1 LTR MaLR -191 174 3 629 185 0 8 chr1 130725165 130725284 -151468380 + L1MB5 LINE L1 6053 6170 -4 1898 168 81 19 chr1 130725296 130725665 -151467999 + MSTA LTR MaLR 1 392 -36 2220 125 3 0 chr1 130725724 130726027 -151467637 - AluSx SINE Alu -8 304 1 248 128 26 0 chr1 130726028 130726067 -151467597 + MSTA LTR MaLR 387 426 0 3555 158 10 3 chr1 130726067 130726656 -151467008 + MSTA-int LTR MaLR 1 593 -1058 8027 26 11 0 chr1 130726659 130727768 -151465896 - L1PA4 LINE L1 -1 6154 5050 1372 167 102 105 chr1 130727768 130728121 -151465543 + MSTA LTR MaLR 77 428 0 525 277 201 28 chr1 130728170 130728636 -151465028 + L2 LINE L2 2737 3282 -31 341 43 0 22 chr1 130728636 130728682 -151464982 - MLT2B1 LTR ERVL 0 520 476 265 200 0 17 chr1 130728683 130728743 -151464921 + LTR66 LTR ERVL 381 439 -171 351 239 0 0 chr1 130728743 130728831 -151464833 + (CA)n Simple_repeat Simple_repeat 2 89 0 2065 140 55 21 chr1 130728839 130729168 -151464496 + MER2 DNA MER2_type 2 341 -3 481 197 79 3 chr1 130729168 130729374 -151464290 - MLT2D LTR ERVL -46 474 91 281 323 84 19 chr1 130729420 130729575 -151464089 - MIR SINE MIR -49 213 49 331 272 108 25 chr1 130729976 130730134 -151463530 - MIR SINE MIR -87 175 5 208 283 181 14 chr1 130730227 130730365 -151463299 + MIR SINE MIR 2 162 -100 207 343 88 36 chr1 130730587 130730724 -151462940 + L2 LINE L2 3127 3270 -2 203 342 34 26 chr1 130731002 130731119 -151462545 + MIR3 SINE MIR 81 198 -10 585 95 24 0 chr1 130731183 130731267 -151462397 + AluY SINE Alu 212 297 -14 341 280 180 11 chr1 130731281 130731470 -151462194 + L1MC5 LINE L1 5313 5533 -2275 2103 135 0 0 chr1 130731479 130731775 -151461889 + AluSx SINE Alu 1 296 -16 855 279 51 29 chr1 130731844 130732195 -151461469 + L1MC5 LINE L1 5566 5924 -1884 26 0 0 0 chr1 130732209 130732235 -151461429 + AT_rich Low_complexity Low_complexity 1 26 0 363 238 16 41 chr1 130732248 130732370 -151461294 - L1MC4 LINE L1 -2 8040 7922 22 0 0 0 chr1 130732524 130732546 -151461118 + AT_rich Low_complexity Low_complexity 1 22 0 843 210 78 41 chr1 130732675 130732970 -151460694 + L1MC5 LINE L1 7083 7388 -573 185 200 129 43 chr1 130733196 130733266 -151460398 + MIR SINE MIR 18 93 -115 890 246 112 73 chr1 130733307 130733691 -151459973 + LTR33A LTR ERVL 63 468 -55 2434 108 16 24 chr1 130733691 130734069 -151459595 - THE1C LTR MaLR 0 375 1 890 246 112 73 chr1 130734069 130734123 -151459541 + LTR33A LTR ERVL 468 518 -5 886 253 77 25 chr1 130734366 130735057 -151458607 + L1ME LINE L1 4845 5597 -569 1923 194 24 80 chr1 130735070 130735098 -151458566 - L1ME2 LINE L1 -15 6149 6121 2328 93 0 26 chr1 130735098 130735411 -151458253 - AluY SINE Alu -6 305 1 1923 194 24 80 chr1 130735411 130735979 -151457685 - L1ME2 LINE L1 -43 6121 5587 604 218 5 78 chr1 130735986 130736179 -151457485 + L1ME LINE L1 5583 5761 -401 427 323 60 35 chr1 130736187 130736419 -151457245 + L2 LINE L2 978 1215 -2099 273 220 186 59 chr1 130736419 130736537 -151457127 + MER20B DNA MER1_type 3 135 -648 1198 262 99 41 chr1 130736590 130737075 -151456589 + L2 LINE L2 1225 1737 -1577 308 269 131 39 chr1 130737096 130737226 -151456438 + MIR3 SINE MIR 32 173 -35 12487 194 39 13 chr1 130737625 130741070 -151452594 + L1PA13 LINE L1 1 3597 -3200 2092 119 10 0 chr1 130741070 130741363 -151452301 + AluSq SINE Alu 1 296 -17 12487 194 39 13 chr1 130741363 130742224 -151451440 + L1PA13 LINE L1 3597 4434 -2363 204 343 81 30 chr1 130743964 130744063 -151449601 - L2 LINE L2 -27 3245 3142 296 291 117 10 chr1 130745119 130745222 -151448442 + L2 LINE L2 3188 3301 -12 2284 165 53 53 chr1 130745278 130745769 -151447895 + MER82 DNA MER2_type 2 492 -161 442 198 40 30 chr1 130746851 130746952 -151446712 - L2 LINE L2 0 3313 3212 520 268 31 0 chr1 130748202 130748329 -151445335 - L2 LINE L2 0 3313 3183 195 250 0 54 chr1 130748421 130748477 -151445187 + MIR SINE MIR 109 161 -101 25 0 0 0 chr1 130748514 130748539 -151445125 + AT_rich Low_complexity Low_complexity 1 25 0 192 350 31 43 chr1 130748568 130748731 -151444933 - MIR SINE MIR -94 168 8 1359 187 103 13 chr1 130748792 130749102 -151444562 + MER58B DNA MER1_type 1 338 -3 470 329 82 0 chr1 130749269 130749427 -151444237 - MIR SINE MIR -46 216 46 408 83 0 0 chr1 130749691 130749751 -151443913 + L1MA4 LINE L1 6236 6295 -5 260 210 0 0 chr1 130749773 130749835 -151443829 + LTR66 LTR ERVL 377 438 -172 484 286 48 40 chr1 130750563 130750803 -151442861 - MIR SINE MIR -6 256 16 247 32 0 0 chr1 130750851 130750882 -151442782 + L1MA4 LINE L1 6232 6262 -38 921 194 16 0 chr1 130750982 130751168 -151442496 + L1MB7 LINE L1 5987 6175 -9 1888 156 7 13 chr1 130751378 130751685 -151441979 + AluJo SINE Alu 1 305 -7 704 165 9 0 chr1 130751760 130751898 -151441766 + FLAM_C SINE Alu 3 141 0 326 222 106 0 chr1 130753268 130753377 -151440287 - MIR SINE MIR -46 162 40 284 262 155 0 chr1 130753424 130753508 -151440156 - MER5A DNA MER1_type -84 105 9 14650 126 28 19 chr1 130753578 130754815 -151438849 + Tigger1 DNA MER2_type 3 1273 -1145 2149 126 0 0 chr1 130754815 130755101 -151438563 - AluSg SINE Alu -24 286 1 14650 126 28 19 chr1 130755101 130756244 -151437420 + Tigger1 DNA MER2_type 1273 2404 -14 1183 268 71 31 chr1 130756508 130756930 -151436734 + MLT1J2 LTR MaLR 5 443 -7 21 36 0 0 chr1 130757481 130757509 -151436155 + AT_rich Low_complexity Low_complexity 1 28 0 246 254 0 30 chr1 130757634 130757701 -151435963 + MIR SINE MIR 87 151 -57 23 0 0 0 chr1 130757809 130757832 -151435832 + AT_rich Low_complexity Low_complexity 1 23 0 2182 105 34 0 chr1 130758120 130758415 -151435249 - AluSx SINE Alu -7 305 1 288 259 52 0 chr1 130759376 130759434 -151434230 + MIR SINE MIR 19 79 -183 261 242 45 0 chr1 130759436 130759502 -151434162 + MIR SINE MIR 194 262 0 276 355 87 7 chr1 130759526 130759664 -151434000 - MIR SINE MIR -27 235 87 21 57 0 0 chr1 130760206 130760241 -151433423 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr1 130760328 130760369 -151433295 + AT_rich Low_complexity Low_complexity 1 41 0 415 258 157 25 chr1 130760643 130760802 -151432862 + MER5A DNA MER1_type 9 188 -1 225 167 48 0 chr1 130761628 130761670 -151431994 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1297 203 61 45 chr1 130761732 130762062 -151431602 + MLT1A1 LTR MaLR 1 335 -30 1931 129 4 0 chr1 130762231 130762494 -151431170 + AluSx SINE Alu 1 264 -48 189 107 0 0 chr1 130762527 130762555 -151431109 + (A)n Simple_repeat Simple_repeat 1 28 0 1955 129 6 41 chr1 130763069 130763386 -151430278 + AluSx SINE Alu 5 310 -2 23 0 0 0 chr1 130763600 130763623 -151430041 + AT_rich Low_complexity Low_complexity 1 23 0 216 284 54 27 chr1 130765181 130765255 -151428409 - MIR SINE MIR -78 184 109 192 184 26 0 chr1 130766374 130766412 -151427252 + L2 LINE L2 3210 3248 -24 651 316 56 4 chr1 130766483 130766714 -151426950 - MIR SINE MIR 0 262 20 6654 75 20 2 chr1 130767490 130768511 -151425153 + L1PA10 LINE L1 5128 6168 0 195 378 70 21 chr1 130768859 130769002 -151424662 + L3b LINE CR1 1415 1564 -19 297 306 92 69 chr1 130769247 130769799 -151423865 + L2 LINE L2 2283 2847 -467 2518 144 26 7 chr1 130769808 130770232 -151423432 + MSTB1 LTR MaLR 1 432 0 7061 184 118 11 chr1 130770232 130771724 -151421940 + MSTB1-int LTR MaLR 1 1651 0 2590 142 28 12 chr1 130771724 130772147 -151421517 + MSTB1 LTR MaLR 1 430 -2 339 237 0 79 chr1 130774028 130774142 -151419522 - MER112 DNA MER1_type -138 122 18 231 122 0 102 chr1 130774547 130774596 -151419068 - MIR SINE MIR -84 178 135 230 185 19 19 chr1 130774618 130774672 -151418992 - MER58 DNA MER1_type 0 2420 2367 542 362 47 47 chr1 130774723 130775124 -151418540 - L2 LINE L2 -649 2665 2265 339 85 0 0 chr1 130775125 130775172 -151418492 + (ATG)n Simple_repeat Simple_repeat 2 48 0 1010 276 29 0 chr1 130775177 130775420 -151418244 - MIR SINE MIR -11 251 2 575 298 59 70 chr1 130775461 130775554 -151418110 - L2 LINE L2 -1127 2187 2094 1664 180 3 27 chr1 130775554 130775849 -151417815 + AluJo SINE Alu 1 288 -24 575 298 59 70 chr1 130775849 130776198 -151417466 - L2 LINE L2 -1220 2094 1750 548 305 102 0 chr1 130776323 130776520 -151417144 + MIR SINE MIR 32 248 -14 406 306 82 82 chr1 130776946 130777250 -151416414 - L2 LINE L2 -55 3217 2914 398 253 247 0 chr1 130778015 130778165 -151415499 - MIR SINE MIR -74 188 2 351 245 44 31 chr1 130778697 130778866 -151414798 + MIR SINE MIR 38 204 -58 396 310 143 12 chr1 130779419 130779723 -151413941 - L3b LINE CR1 -95 1488 1103 205 383 62 0 chr1 130779825 130779987 -151413677 + L3 LINE CR1 645 816 -761 288 0 0 0 chr1 130780472 130780504 -151413160 + (TG)n Simple_repeat Simple_repeat 2 33 0 1708 162 0 62 chr1 130780508 130780816 -151412848 - AluJb SINE Alu -23 289 1 274 317 0 0 chr1 130781586 130781668 -151411996 - L1ME LINE L1 -446 5675 5594 1782 162 3 23 chr1 130782585 130782888 -151410776 - AluJo SINE Alu -15 297 1 288 307 184 0 chr1 130783811 130783925 -151409739 - L2 LINE L2 -2 3270 3136 258 262 161 101 chr1 130784073 130784241 -151409423 - MIR3 SINE MIR -15 193 16 381 270 108 0 chr1 130784375 130784486 -151409178 + MIR SINE MIR 21 143 -65 2146 141 24 11 chr1 130784894 130785269 -151408395 - L1MA8 LINE L1 -51 6240 5861 1103 281 98 26 chr1 130786449 130786555 -151407109 - L1ME3 LINE L1 -247 5915 5818 1365 151 26 9 chr1 130786555 130786787 -151406877 + MER46A DNA MER2_type 1 236 0 1103 281 98 26 chr1 130786787 130787563 -151406101 - L1ME3 LINE L1 -344 5818 4967 452 336 7 29 chr1 130788650 130788787 -151404877 + L2 LINE L2 3134 3267 -5 1093 173 158 70 chr1 130789400 130789798 -151403866 - Charlie1b DNA MER1_type 0 523 91 862 147 96 19 chr1 130789801 130789958 -151403706 - AluJb SINE Alu -15 297 129 4440 190 85 30 chr1 130789971 130791085 -151402579 + Charlie1a DNA MER1_type 41 1216 -239 629 179 0 8 chr1 130791108 130791225 -151402439 + Charlie1a DNA MER1_type 1336 1451 -4 218 324 29 0 chr1 130791436 130791504 -151402160 - MIR3 SINE MIR -12 196 127 357 182 57 11 chr1 130791751 130791839 -151401825 - MIR SINE MIR -10 252 161 184 366 50 50 chr1 130792241 130792342 -151401322 + MIR SINE MIR 21 121 -141 219 370 54 0 chr1 130794435 130794527 -151399137 + L2 LINE L2 3140 3236 -36 1618 185 95 47 chr1 130795219 130795712 -151397952 + Looper DNA T2_type 1 517 -1041 4168 136 28 67 chr1 130795747 130795806 -151397858 - L1MB7 LINE L1 -21 6163 6103 719 229 0 0 chr1 130795806 130795937 -151397727 - FLAM_A SINE Alu -1 132 2 4168 136 28 67 chr1 130795937 130796144 -151397520 - L1MB7 LINE L1 -81 6103 5890 2148 102 7 3 chr1 130796144 130796437 -151397227 + AluSc SINE Alu 1 294 -15 2273 110 0 0 chr1 130796437 130796747 -151396917 + AluY SINE Alu 1 310 -1 4168 136 28 67 chr1 130796747 130797331 -151396333 - L1MB7 LINE L1 -292 5892 5344 1767 223 52 33 chr1 130797331 130797815 -151395849 + MER74B LTR ERVL 56 548 -74 5357 218 56 23 chr1 130797898 130799380 -151394284 - L1MB7 LINE L1 -833 5351 3690 2077 160 70 9 chr1 130799385 130799641 -151394023 + Looper DNA T2_type 509 803 -755 2025 143 3 7 chr1 130799641 130799942 -151393722 - AluSx SINE Alu -7 305 6 2077 160 70 9 chr1 130799942 130800111 -151393553 + Looper DNA T2_type 803 960 -598 388 130 330 0 chr1 130800134 130800249 -151393415 + Looper DNA T2_type 1406 1558 0 885 340 138 27 chr1 130800451 130801370 -151392294 + L2 LINE L2 2244 3252 -20 325 288 158 0 chr1 130801523 130801662 -151392002 - MIR SINE MIR -61 201 41 378 290 191 50 chr1 130802331 130802593 -151391071 + L2 LINE L2 2988 3286 -27 410 330 89 80 chr1 130802884 130803817 -151389847 + L2 LINE L2 2098 3037 -235 22 35 0 0 chr1 130803909 130803938 -151389726 + AT_rich Low_complexity Low_complexity 1 29 0 212 238 0 0 chr1 130804025 130804067 -151389597 + L2 LINE L2 3182 3223 -49 1415 215 7 14 chr1 130804199 130804518 -151389146 + AluJo SINE Alu 1 317 0 271 259 196 36 chr1 130804858 130804970 -151388694 + L2 LINE L2 3143 3272 0 297 339 0 46 chr1 130805467 130805576 -151388088 - MIR3 SINE MIR -102 106 3 392 343 15 22 chr1 130806290 130806427 -151387237 - L3 LINE CR1 -13 1564 1429 475 309 304 21 chr1 130806685 130807168 -151386496 - L3 LINE CR1 -275 1302 683 442 176 0 0 chr1 130807174 130807248 -151386416 + MER57A LTR ERV1 302 375 -28 306 350 38 25 chr1 130807251 130807408 -151386256 - L3 LINE CR1 -882 695 537 969 184 12 12 chr1 130807429 130807597 -151386067 - FAM SINE Alu -6 169 2 412 259 78 63 chr1 130808444 130808649 -151385015 + HAL1 LINE L1 4 211 -2296 396 260 193 13 chr1 130808717 130808867 -151384797 + MIR SINE MIR 37 213 -49 2562 244 137 42 chr1 130808899 130809401 -151384263 + HAL1 LINE L1 262 715 -1792 1496 224 56 11 chr1 130809401 130809759 -151383905 + MLT1A2 LTR MaLR 1 374 0 2562 244 137 42 chr1 130809759 130810509 -151383155 + HAL1 LINE L1 715 1632 -875 444 303 26 13 chr1 130810570 130810725 -151382939 + HAL1 LINE L1 1761 1917 -590 415 277 38 47 chr1 130810932 130811167 -151382497 + L1MC4 LINE L1 7505 7737 -305 338 328 212 12 chr1 130811440 130811699 -151381965 - L3 LINE CR1 -153 1424 1114 * 537 318 151 41 chr1 130811696 130812410 -151381254 - L2 LINE L2 -68 3245 2431 2291 125 0 0 chr1 130812410 130812722 -151380942 + AluSx SINE Alu 1 312 0 537 318 151 41 chr1 130812722 130812761 -151380903 - L2 LINE L2 -882 2431 2398 599 281 131 15 chr1 130812789 130813049 -151380615 - L3 LINE CR1 -732 845 556 199 225 169 0 chr1 130813069 130813140 -151380524 - MIR SINE MIR -2 260 178 256 224 0 0 chr1 130813162 130813211 -151380453 - L2 LINE L2 -14 3299 3251 * 498 246 40 24 chr1 130813198 130813324 -151380340 - MIR SINE MIR -96 166 39 2142 162 64 24 chr1 130814625 130814751 -151378913 + L1MB8 LINE L1 5701 5821 -357 2419 80 10 0 chr1 130814751 130815051 -151378613 + AluY SINE Alu 1 303 -8 2142 162 64 24 chr1 130815051 130815374 -151378290 + L1MB8 LINE L1 5820 6168 -10 442 201 141 16 chr1 130815382 130815566 -151378098 + L1ME2 LINE L1 5816 6022 -142 626 195 39 13 chr1 130815572 130815726 -151377938 + L1MA10 LINE L1 6164 6321 -13 182 97 129 0 chr1 130816364 130816395 -151377269 - L2 LINE L2 -4 3268 3234 436 86 0 0 chr1 130816851 130816909 -151376755 + AluSp/q SINE Alu 235 292 -21 2381 297 100 23 chr1 130816910 130818118 -151375546 - L2 LINE L2 -19 3253 1935 5524 108 200 28 chr1 130818118 130819172 -151374492 - MER11B LTR ERVK 0 1236 1 254 294 25 56 chr1 130819287 130819447 -151374217 - L1ME3 LINE L1 -46 6116 5962 429 238 133 28 chr1 130819533 130819714 -151373950 - L1MC5 LINE L1 -430 7531 7332 2306 107 18 0 chr1 130819788 130820125 -151373539 - L1PA15 LINE L1 -1 6164 5822 1963 154 6 3 chr1 130820830 130821141 -151372523 + AluJb SINE Alu 1 312 0 331 327 188 0 chr1 130821299 130821464 -151372200 + MIR SINE MIR 1 196 -66 355 337 172 0 chr1 130821764 130822055 -151371609 + L2 LINE L2 1758 2098 -1216 762 186 234 34 chr1 130823732 130824082 -151369582 - LTR37A LTR ERV1 -6 420 1 648 287 11 6 chr1 130826427 130826608 -151367056 + MIR SINE MIR 2 183 -79 1416 150 117 26 chr1 130826609 130826882 -151366782 - AluJo SINE Alu -12 300 3 231 234 0 0 chr1 130826912 130826959 -151366705 - MIR SINE MIR -26 236 190 26 0 0 0 chr1 130827044 130827070 -151366594 + AT_rich Low_complexity Low_complexity 1 26 0 329 319 135 17 chr1 130827070 130827418 -151366246 - L2 LINE L2 -847 2467 2079 793 164 30 94 chr1 130827972 130828173 -151365491 + MER5A DNA MER1_type 2 189 0 416 252 45 9 chr1 130828174 130828285 -151365379 + L2 LINE L2 3190 3304 -9 1980 120 0 30 chr1 130828577 130828876 -151364788 + AluSx SINE Alu 6 295 -17 826 285 120 63 chr1 130830773 130832347 -151361317 + L1ME4a LINE L1 4457 6110 -11 345 200 0 0 chr1 130832959 130833039 -151360625 - MER116 DNA Mariner 0 80 1 1738 185 0 14 chr1 130836101 130836433 -151357231 + AluJo SINE Alu 1 328 0 411 71 86 29 chr1 130837068 130837138 -151356526 - MADE1 DNA Mariner 0 80 7 420 274 85 24 chr1 130837155 130837319 -151356345 - MIR SINE MIR -23 239 66 225 354 0 0 chr1 130837973 130838038 -151355626 - MIR SINE MIR -153 109 45 216 0 0 0 chr1 130838549 130838573 -151355091 + (T)n Simple_repeat Simple_repeat 1 24 0 2168 117 0 0 chr1 130838622 130838912 -151354752 - AluSx SINE Alu -22 290 1 581 273 134 16 chr1 130839482 130839676 -151353988 + L2 LINE L2 1141 1357 -1957 2571 265 170 16 chr1 130839766 130840353 -151353311 + L2 LINE L2 1805 2300 -1013 2159 114 30 0 chr1 130840353 130840652 -151353012 - AluSx SINE Alu -4 308 1 2571 265 170 16 chr1 130840652 130841351 -151352313 + L2 LINE L2 2300 3308 -5 268 132 171 53 chr1 130842018 130842094 -151351570 - L1ME4a LINE L1 -70 6051 5967 22 21 0 62 chr1 130842115 130842163 -151351501 + AT_rich Low_complexity Low_complexity 1 45 0 2610 50 0 0 chr1 130842319 130842621 -151351043 + AluY SINE Alu 1 302 -9 214 239 256 26 chr1 130842705 130842822 -151350842 + MIR SINE MIR 31 174 -88 330 280 159 11 chr1 130843247 130843430 -151350234 - MIR SINE MIR -43 219 13 515 307 36 27 chr1 130844526 130844751 -151348913 - MARNA DNA Mariner -44 542 316 375 279 69 0 chr1 130846081 130846217 -151347447 - MER5B DNA MER1_type 0 178 47 249 29 0 0 chr1 130847048 130847082 -151346582 + Alu SINE Alu 263 296 -5 205 286 191 32 chr1 130850738 130850864 -151342800 - MIR SINE MIR -114 148 3 485 258 168 10 chr1 130851354 130851664 -151342000 - L1ME4a LINE L1 -215 5906 5548 465 146 207 0 chr1 130851855 130851937 -151341727 + AluJ/FLAM SINE Alu 2 100 -212 361 273 177 40 chr1 130852321 130852570 -151341094 + L1M4 LINE L1 4743 5025 -1121 599 167 0 0 chr1 130852955 130853051 -151340613 + AluJ/FLAM SINE Alu 2 97 -215 1279 135 70 0 chr1 130853245 130853460 -151340204 - MER30 DNA MER1_type 0 230 1 183 156 0 0 chr1 130855054 130855086 -151338578 + GA-rich Low_complexity Low_complexity 3 34 0 182 327 18 0 chr1 130855569 130855624 -151338040 - MIR3 SINE MIR -11 197 142 423 56 0 0 chr1 130855769 130855823 -151337841 + (TG)n Simple_repeat Simple_repeat 2 55 0 1195 124 154 43 chr1 130855839 130856073 -151337591 - Tigger2 DNA MER2_type -1 2717 2458 743 96 19 0 chr1 130856126 130856230 -151337434 - Tigger2 DNA MER2_type -1974 744 639 * 2333 160 95 15 chr1 130856227 130856661 -151337003 - Tigger2 DNA MER2_type -2190 528 51 2049 124 0 7 chr1 130856661 130856967 -151336697 + AluSg SINE Alu 1 304 -6 2333 160 95 15 chr1 130856967 130857006 -151336658 - Tigger2 DNA MER2_type -2667 51 17 230 274 49 10 chr1 130857080 130857182 -151336482 - L1M4 LINE L1 -2616 3530 3425 21 0 0 0 chr1 130857569 130857590 -151336074 + AT_rich Low_complexity Low_complexity 1 21 0 545 113 12 0 chr1 130858140 130858220 -151335444 + AluSg/x SINE Alu 216 296 -16 529 215 33 15 chr1 130858817 130858960 -151334704 + MLT1F1 LTR MaLR 39 188 -379 2437 70 0 3 chr1 130859021 130859323 -151334341 - AluY SINE Alu -10 301 1 233 261 0 0 chr1 130860211 130860257 -151333407 + polypurine Low_complexity Low_complexity 4 49 0 325 222 60 43 chr1 130860273 130860390 -151333274 + L2 LINE L2 3099 3217 -96 359 244 99 30 chr1 130862431 130862562 -151331102 + MIR SINE MIR 31 170 -92 255 62 0 0 chr1 130862829 130862861 -151330803 + AluSp/q SINE Alu 174 205 -98 921 85 0 0 chr1 130862861 130862979 -151330685 + AluSc SINE Alu 185 302 -7 1422 69 32 0 chr1 130863029 130863217 -151330447 + MER30 DNA MER1_type 1 194 -36 293 269 87 19 chr1 130864221 130864325 -151329339 - MIR3 SINE MIR -13 195 85 209 221 59 15 chr1 130864547 130864615 -151329049 - MIR SINE MIR -6 256 186 180 296 49 37 chr1 130864601 130864682 -151328982 + L2 LINE L2 3186 3267 -5 * 2042 132 0 0 chr1 130864958 130865274 -151328390 + AluSg SINE Alu 1 316 0 195 167 0 0 chr1 130867356 130867398 -151326266 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 437 268 98 43 chr1 130867831 130867995 -151325669 - MIR SINE MIR -70 192 20 963 198 11 0 chr1 130868005 130868192 -151325472 - MER5A DNA MER1_type 0 189 1 566 267 158 0 chr1 130868209 130868355 -151325309 + MER5A DNA MER1_type 21 189 0 502 225 225 0 chr1 130868698 130868867 -151324797 + MER63A DNA MER1_type 2 208 -2 2730 158 89 9 chr1 130869357 130869884 -151323780 - L1PA16 LINE L1 0 6166 5598 359 285 0 88 chr1 130869951 130870088 -151323576 - MIR SINE MIR -50 212 88 278 315 39 31 chr1 130871128 130871255 -151322409 - MIR SINE MIR -122 140 13 283 258 0 30 chr1 130871338 130871404 -151322260 + MER5B DNA MER1_type 66 129 -49 802 253 82 25 chr1 130871563 130871808 -151321856 - MIR SINE MIR -2 260 2 248 245 35 49 chr1 130872096 130872239 -151321425 + MLT1H LTR MaLR 94 234 -315 240 207 69 0 chr1 130872343 130872401 -151321263 + MER63 DNA MER1_type 5 692 -370 24 24 0 24 chr1 130872663 130872687 -151320977 + AT_rich Low_complexity Low_complexity 1 25 -16 2282 86 0 36 chr1 130872687 130872991 -151320673 + AluSx SINE Alu 1 293 -19 24 24 0 24 chr1 130872991 130873008 -151320656 + AT_rich Low_complexity Low_complexity 25 41 0 449 272 99 25 chr1 130873053 130873215 -151320449 + MIR3 SINE MIR 30 203 -5 803 339 139 9 chr1 130873327 130873903 -151319761 + L2 LINE L2 405 1055 -2259 1248 284 209 43 chr1 130873903 130874526 -151319138 + L2 LINE L2 1416 1934 -1379 2428 83 0 3 chr1 130874526 130874828 -151318836 - AluSq SINE Alu -12 301 1 1248 284 209 43 chr1 130874828 130875821 -151317843 + L2 LINE L2 1934 3312 -1 2201 131 0 0 chr1 130875879 130876191 -151317473 - AluSx SINE Alu 0 312 1 348 338 0 26 chr1 130877553 130877707 -151315957 + MER117 DNA MER1_type 8 157 -40 2548 57 0 0 chr1 130877901 130878200 -151315464 - AluY SINE Alu -12 299 1 1459 288 34 28 chr1 130878258 130878660 -151315004 - L1MC4 LINE L1 -190 7852 7443 2259 98 50 31 chr1 130878660 130879017 -151314647 - THE1B LTR MaLR 0 364 1 1459 288 34 28 chr1 130879017 130879225 -151314439 - L1MC4 LINE L1 -599 7443 7238 732 255 46 95 chr1 130880981 130881349 -151312315 + MLT1J LTR MaLR 158 507 -4 653 261 81 39 chr1 130881358 130881592 -151312072 - MIR SINE MIR -12 250 7 302 301 62 18 chr1 130881610 130881723 -151311941 - MIR3 SINE MIR -17 191 74 258 340 60 28 chr1 130881871 130882086 -151311578 + L2 LINE L2 1803 2024 -1290 954 212 60 76 chr1 130882397 130882838 -151310826 + MER39 LTR ERV1 10 594 -113 312 260 177 0 chr1 130883294 130883390 -151310274 + L3 LINE CR1 1393 1505 -72 450 277 65 0 chr1 130884353 130884508 -151309156 + MER103 DNA DNA 2 166 0 772 161 59 54 chr1 130884742 130884841 -151308823 - MER53 DNA DNA -2 187 85 2554 137 11 43 chr1 130884841 130885231 -151308433 - MSTB1 LTR MaLR 0 432 56 1752 179 0 13 chr1 130885231 130885539 -151308125 - AluJb SINE Alu -8 304 1 2554 137 11 43 chr1 130885539 130885592 -151308072 - MSTB1 LTR MaLR -376 56 3 772 161 59 54 chr1 130885592 130885678 -151307986 - MER53 DNA DNA -104 85 1 264 310 14 0 chr1 130885886 130885957 -151307707 - Charlie8 DNA MER1_type -2345 72 1 260 279 0 15 chr1 130887449 130887517 -151306147 + MIR3 SINE MIR 112 178 -30 301 322 0 41 chr1 130887590 130887711 -151305953 - L2 LINE L2 -1 3312 3197 307 237 149 9 chr1 130889094 130889208 -151304456 - MIR3 SINE MIR -37 171 42 410 273 83 8 chr1 130889429 130889550 -151304114 - MIR3 SINE MIR -37 171 42 25 0 0 0 chr1 130889850 130889875 -151303789 + AT_rich Low_complexity Low_complexity 1 25 0 584 324 87 66 chr1 130891029 130891467 -151302197 + L2 LINE L2 2824 3270 -2 369 0 0 0 chr1 130891692 130891733 -151301931 + (CA)n Simple_repeat Simple_repeat 2 42 0 537 289 81 62 chr1 130892947 130893317 -151300347 + L3 LINE CR1 1101 1477 -100 219 69 0 0 chr1 130893563 130893592 -151300072 + (A)n Simple_repeat Simple_repeat 1 29 0 1323 180 54 34 chr1 130893607 130893901 -151299763 - MER58B DNA MER1_type 0 341 42 4267 183 3 14 chr1 130893963 130894825 -151298839 - L1P LINE L1 -915 5231 4379 36760 88 12 24 chr1 130894833 130901055 -151292609 - L1PA6 LINE L1 0 6154 13 3946 174 64 32 chr1 130902217 130903303 -151290361 - L1MB7 LINE L1 -22 6162 5042 182 156 0 89 chr1 130903864 130903909 -151289755 + MIR SINE MIR 216 256 -6 23 68 0 0 chr1 130904641 130904685 -151288979 + AT_rich Low_complexity Low_complexity 1 44 0 237 288 0 0 chr1 130904905 130904971 -151288693 + (TATG)n Simple_repeat Simple_repeat 1 66 0 300 287 11 2 chr1 130904988 130905141 -151288523 - L1ME LINE L1 -356 5806 5653 837 185 131 39 chr1 130905197 130905359 -151288305 + L1MA9 LINE L1 5991 6187 -125 387 0 0 0 chr1 130905359 130905402 -151288262 + (CA)n Simple_repeat Simple_repeat 2 44 0 837 185 131 39 chr1 130905402 130905499 -151288165 + L1MA9 LINE L1 6187 6274 -38 2541 130 37 37 chr1 130905883 130906368 -151287296 + L1MA8 LINE L1 5686 6170 -121 5581 127 14 1 chr1 130906369 130907829 -151285835 + L1PA13 LINE L1 4698 6144 -19 264 30 0 0 chr1 130907857 130907890 -151285774 + (CA)n Simple_repeat Simple_repeat 2 34 0 638 161 46 52 chr1 130907941 130908115 -151285549 + L1MA8 LINE L1 6116 6288 -3 491 244 109 0 chr1 130908621 130908740 -151284924 - MIR SINE MIR -67 195 64 352 163 70 35 chr1 130908770 130908856 -151284808 - LTR65 LTR ERV1 -241 428 340 385 326 97 0 chr1 130909088 130909263 -151284401 + LTR16A LTR ERVL 258 449 -1 600 296 61 5 chr1 130909560 130909756 -151283908 + MIR SINE MIR 4 210 -52 311 287 101 23 chr1 130909985 130910114 -151283550 - MIR SINE MIR -102 160 22 978 219 100 0 chr1 130910178 130910388 -151283276 + MIR SINE MIR 32 262 0 386 312 156 5 chr1 130910928 130911114 -151282550 + MIR SINE MIR 20 233 -29 2026 114 48 0 chr1 130911116 130911405 -151282259 + AluSq SINE Alu 1 303 -10 258 81 0 0 chr1 130911929 130911966 -151281698 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 200 339 0 0 chr1 130911968 130912024 -151281640 - L2 LINE L2 -8 3305 3250 343 320 75 70 chr1 130914023 130914608 -151279056 + L1MEd LINE L1 2 589 -5530 893 204 6 12 chr1 130914664 130914826 -151278838 + AluJ SINE Alu 1 161 -151 520 237 22 0 chr1 130914845 130914984 -151278680 + HAL1 LINE L1 1503 1644 -863 940 138 7 0 chr1 130915027 130915165 -151278499 + AluJ SINE Alu 162 300 -12 701 290 104 22 chr1 130915229 130916016 -151277648 + L1MEd LINE L1 722 1572 -4738 652 221 64 41 chr1 130916033 130916261 -151277403 + L1MEd LINE L1 2136 2376 -3753 1859 128 38 51 chr1 130916261 130916574 -151277090 + AluSx SINE Alu 1 309 -3 652 221 64 41 chr1 130916574 130916689 -151276975 + L1MEd LINE L1 2376 2487 -3642 1279 196 48 24 chr1 130916847 130917138 -151276526 + MER58B DNA MER1_type 2 299 -42 564 153 45 9 chr1 130917138 130917249 -151276415 + L1M4 LINE L1 92 206 -6336 2495 112 112 54 chr1 130917328 130917827 -151275837 + L1MC2 LINE L1 5809 6336 -8 591 262 71 0 chr1 130918232 130918410 -151275254 + MIR SINE MIR 16 205 -57 490 303 82 39 chr1 130918448 130918757 -151274907 + L1ME LINE L1 5267 5584 -537 289 258 55 99 chr1 130918893 130919075 -151274589 + MLT1L LTR MaLR 218 391 -224 21 0 0 0 chr1 130919329 130919350 -151274314 + AT_rich Low_complexity Low_complexity 1 21 0 445 208 52 0 chr1 130919675 130919771 -151273893 - LTR50 LTR ERVL -687 108 8 207 209 0 70 chr1 130919784 130919870 -151273794 + T-rich Low_complexity Low_complexity 2 81 0 353 331 44 24 chr1 130920079 130920372 -151273292 - HAL1 LINE L1 -985 1522 1224 1714 153 57 27 chr1 130921602 130921902 -151271762 - AluJo SINE Alu -1 311 3 335 295 87 13 chr1 130922616 130922765 -151270899 - MIR SINE MIR -6 256 97 23 33 0 0 chr1 130923463 130923493 -151270171 + AT_rich Low_complexity Low_complexity 1 30 0 223 310 62 18 chr1 130923603 130923716 -151269948 - MIR SINE MIR -68 140 23 677 233 94 22 chr1 130924039 130924262 -151269402 + MIR SINE MIR 13 251 -11 948 188 14 43 chr1 130924861 130925069 -151268595 + MLT1A1 LTR MaLR 9 210 -155 1009 272 62 0 chr1 130925080 130925337 -151268327 + AluJo SINE Alu 1 273 -39 213 39 0 0 chr1 130925347 130925373 -151268291 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 723 213 0 7 chr1 130925375 130925511 -151268153 + MLT1A1 LTR MaLR 220 354 -11 22 70 0 0 chr1 130925660 130925703 -151267961 + AT_rich Low_complexity Low_complexity 1 43 0 5130 51 0 26 chr1 130926519 130927183 -151266481 - L1PA8 LINE L1 0 6172 5526 225 0 0 0 chr1 130927290 130927315 -151266349 + (T)n Simple_repeat Simple_repeat 1 25 0 2074 126 13 7 chr1 130928695 130929005 -151264659 - AluSx SINE Alu 0 312 1 433 348 25 0 chr1 130929042 130929203 -151264461 + MER5B DNA MER1_type 6 170 -8 754 345 106 23 chr1 130929226 130929979 -151263685 + L2 LINE L2 2178 3030 -242 190 297 149 27 chr1 130930247 130930321 -151263343 - L2 LINE L2 -8 3264 3182 372 327 46 69 chr1 130930449 130930666 -151262998 + L2 LINE L2 2857 3068 -204 199 313 22 101 chr1 130930640 130930819 -151262845 - L2 LINE L2 -219 3053 2889 * 1954 168 16 0 chr1 130932023 130932326 -151261338 + AluJo SINE Alu 1 308 -4 219 69 0 0 chr1 130932326 130932355 -151261309 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 228 182 0 0 chr1 130932544 130932588 -151261076 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 100 0 0 chr1 130932700 130932740 -151260924 + (CA)n Simple_repeat Simple_repeat 2 41 0 2549 153 25 2 chr1 130933460 130933906 -151259758 - L1PA15 LINE L1 0 6165 5710 6236 155 24 2 chr1 130934094 130935207 -151258457 + L1MC1 LINE L1 5186 6324 -9 1468 153 34 0 chr1 130935646 130935908 -151257756 + L1PA15 LINE L1 5879 6149 -16 223 175 25 0 chr1 130937364 130937404 -151256260 + MER5A DNA MER1_type 149 189 0 386 312 64 20 chr1 130938282 130938484 -151255180 + L2 LINE L2 2443 2653 -661 305 284 25 0 chr1 130938609 130938690 -151254974 + L1MEd LINE L1 442 524 -5595 2392 116 59 0 chr1 130938716 130939071 -151254593 + MER51B LTR ERV1 2 377 0 276 272 123 15 chr1 130939081 130939276 -151254388 + L1MEd LINE L1 683 898 -5221 287 268 0 10 chr1 130939324 130939421 -151254243 + L1MEd LINE L1 1158 1253 -4866 3409 214 73 14 chr1 130939428 130940306 -151253358 - MER63C DNA MER1_type 0 930 1 2184 72 0 0 chr1 130940345 130940609 -151253055 + AluSg SINE Alu 35 298 -12 263 265 18 72 chr1 130940646 130940703 -151252961 + L1MEd LINE L1 1431 1490 -4820 2179 143 120 5 chr1 130940703 130941087 -151252577 + MSTA LTR MaLR 1 428 0 263 265 18 72 chr1 130941087 130941195 -151252469 + L1MEd LINE L1 1490 1587 -4723 2503 247 65 45 chr1 130941228 130942013 -151251651 + MER21B LTR ERV1 12 812 -51 1947 144 3 3 chr1 130942158 130942456 -151251208 + AluJo SINE Alu 1 298 -14 201 206 29 29 chr1 130942596 130942664 -151251000 + (TTAAA)n Simple_repeat Simple_repeat 5 72 0 844 148 198 41 chr1 130942707 130942950 -151250714 - MER58D DNA MER1_type -11 375 95 243 256 24 40 chr1 130943175 130943300 -151250364 - L1M4 LINE L1 -1744 4402 4280 892 163 0 7 chr1 130943322 130943475 -151250189 + L1MA8 LINE L1 1 152 -6878 1794 265 114 45 chr1 130943477 130944533 -151249131 + L1MA8 LINE L1 635 1762 -5268 3713 190 20 22 chr1 130944540 130944718 -151248946 + L1MA8 LINE L1 4121 4298 -2808 2306 112 0 0 chr1 130944718 130945023 -151248641 + AluSg SINE Alu 1 305 -5 3713 190 20 22 chr1 130945023 130945687 -151247977 + L1MA8 LINE L1 4298 4961 -2145 869 159 12 12 chr1 130945685 130945855 -151247809 + L1MA8 LINE L1 5509 5678 -1428 * 4671 127 4 14 chr1 130945855 130946573 -151247091 + MER50 LTR ERV1 1 711 -23 3201 155 19 30 chr1 130946574 130947677 -151245987 + L1MA8 LINE L1 5675 6766 -485 283 150 81 38 chr1 130947678 130947838 -151245826 + (TA)n Simple_repeat Simple_repeat 1 167 0 309 144 31 31 chr1 130947843 130948003 -151245661 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 201 179 51 51 chr1 130948008 130948086 -151245578 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 * 246 138 75 25 chr1 130948028 130948108 -151245556 + (TA)n Simple_repeat Simple_repeat 1 84 0 276 121 58 46 chr1 130948114 130948288 -151245376 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 3074 134 10 2 chr1 130948291 130948792 -151244872 + L1MA8 LINE L1 6743 7247 -4 253 331 65 0 chr1 130948810 130948964 -151244700 + L1ME LINE L1 3634 3797 -2349 256 332 50 28 chr1 130949449 130949768 -151243896 + L1ME LINE L1 4723 5048 -1098 426 218 73 73 chr1 130949921 130950100 -151243564 - L1ME3A LINE L1 -76 6094 5916 554 343 48 39 chr1 130950245 130950557 -151243107 - L3 LINE CR1 -1 1576 1262 230 347 11 0 chr1 130952325 130952420 -151241244 + L1ME LINE L1 5483 5578 -543 26 0 0 0 chr1 130952640 130952666 -151240998 + AT_rich Low_complexity Low_complexity 1 26 0 612 274 29 6 chr1 130952890 130953065 -151240599 + L2 LINE L2 2296 2474 -840 1225 107 0 11 chr1 130953067 130953244 -151240420 - AluSg/x SINE Alu -2 310 136 31 26 0 0 chr1 130953282 130953320 -151240344 + AT_rich Low_complexity Low_complexity 1 38 0 1187 241 30 4 chr1 130953328 130953594 -151240070 + L2 LINE L2 2527 2799 -515 31 26 0 0 chr1 130953936 130953974 -151239690 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr1 130954140 130954162 -151239502 + AT_rich Low_complexity Low_complexity 1 22 0 1676 183 10 0 chr1 130954313 130954603 -151239061 - AluJo SINE Alu -13 299 7 328 275 30 46 chr1 130954673 130954804 -151238860 + MLT1J LTR MaLR 328 456 -55 352 231 176 55 chr1 130954855 130955111 -151238553 + L1M4 LINE L1 2276 2562 -3584 231 339 26 0 chr1 130955129 130955244 -151238420 + L1M4 LINE L1 3344 3461 -2685 275 224 0 0 chr1 130955390 130955457 -151238207 - L1 LINE L1 -1129 6436 6370 773 156 26 7 chr1 130955468 130955622 -151238042 - L1MA8 LINE L1 0 6291 6135 1131 255 77 29 chr1 130955634 130956070 -151237594 - L1 LINE L1 -3606 3959 3512 580 167 10 0 chr1 130956076 130956178 -151237486 - L1 LINE L1 -2266 3880 3778 306 191 105 71 chr1 130956183 130956393 -151237271 - L1 LINE L1 -4056 3509 3293 555 198 0 0 chr1 130956407 130956518 -151237146 - FLAM_A SINE Alu -1 141 31 912 270 29 9 chr1 130956556 130956901 -151236763 - L1 LINE L1 -4343 3222 2871 492 224 0 9 chr1 130956916 130957032 -151236632 - L1 LINE L1 -5047 2449 2335 2863 197 59 2 chr1 130957033 130957127 -151236537 + L1MB1 LINE L1 5378 5465 -724 186 43 0 0 chr1 130957127 130957150 -151236514 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2863 197 59 2 chr1 130957150 130957663 -151236001 + L1MB1 LINE L1 5465 6020 -169 893 221 33 12 chr1 130957663 130957907 -151235757 + L1MA10 LINE L1 6085 6333 -1 2696 19 3 10 chr1 130958188 130958501 -151235163 + AluYa5 SINE Alu 1 311 0 1615 308 104 32 chr1 130958585 130959128 -151234536 + L1M4 LINE L1 2342 2844 -3302 7923 35 0 0 chr1 130959128 130960894 -151232770 + L1PA4 LINE L1 4432 6155 0 1615 308 104 32 chr1 130960894 130962082 -151231582 + L1M4 LINE L1 2844 4198 -1948 284 350 82 0 chr1 130962596 130962693 -151230971 + L2 LINE L2 3145 3249 -23 217 143 16 32 chr1 130962767 130962830 -151230834 + (CTAA)n Simple_repeat Simple_repeat 3 64 0 1212 185 51 114 chr1 130963375 130963770 -151229894 + MLT1A2 LTR MaLR 1 370 -4 219 268 101 80 chr1 130963814 130963952 -151229712 - MIR3 SINE MIR -63 145 5 194 0 39 0 chr1 130964244 130964270 -151229394 + (TA)n Simple_repeat Simple_repeat 1 27 0 312 258 15 0 chr1 130964793 130964859 -151228805 - L2 LINE L2 -25 3288 3222 591 188 0 17 chr1 130964885 130965002 -151228662 - FLAM_A SINE Alu -8 134 20 1227 276 151 41 chr1 130965069 130965167 -151228497 - L2 LINE L2 -629 2685 2599 2201 105 0 7 chr1 130965167 130965462 -151228202 + AluSc SINE Alu 1 293 -16 1227 276 151 41 chr1 130965462 130966118 -151227546 - L2 LINE L2 -715 2599 1848 5076 268 66 45 chr1 130966260 130966684 -151226980 + HAL1 LINE L1 125 538 -1969 1130 165 50 94 chr1 130966684 130967023 -151226641 - MER33 DNA MER1_type 0 324 1 5076 268 66 45 chr1 130967023 130967479 -151226185 + HAL1 LINE L1 538 983 -1524 2045 113 18 0 chr1 130967479 130967762 -151225902 + AluSx SINE Alu 9 296 -16 5076 268 66 45 chr1 130967762 130969213 -151224451 + HAL1 LINE L1 983 2507 0 840 212 102 18 chr1 130969311 130969537 -151224127 + MIR SINE MIR 13 257 -5 483 271 237 30 chr1 130971746 130972210 -151221454 + L2 LINE L2 2748 3311 -2 482 217 106 61 chr1 130973990 130974170 -151219494 + MIR SINE MIR 10 197 -65 22 56 0 0 chr1 130974410 130974446 -151219218 + AT_rich Low_complexity Low_complexity 1 36 0 1683 261 63 66 chr1 130974557 130975991 -151217673 - L1M4 LINE L1 -1856 4290 2862 867 128 0 23 chr1 130976169 130976302 -151217362 - AluJo SINE Alu -176 136 7 191 279 126 27 chr1 130976590 130976701 -151216963 - L2 LINE L2 -516 2798 2677 288 0 0 0 chr1 130977162 130977194 -151216470 + (CA)n Simple_repeat Simple_repeat 2 33 0 1145 298 92 22 chr1 130978625 130979105 -151214559 - L2 LINE L2 0 3313 2797 1259 141 14 28 chr1 130979145 130979358 -151214306 - AluJb SINE Alu -102 210 1 703 308 180 8 chr1 130979361 130979612 -151214052 - L2 LINE L2 -534 2780 2574 2202 112 3 0 chr1 130979612 130979906 -151213758 + AluSg SINE Alu 5 299 -11 703 308 180 8 chr1 130979906 130980037 -151213627 - L2 LINE L2 -740 2574 2332 198 0 0 0 chr1 130980594 130980616 -151213048 + (CA)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr1 130982264 130982292 -151211372 + AT_rich Low_complexity Low_complexity 1 28 0 452 287 144 17 chr1 130982435 130982616 -151211048 - MIR SINE MIR -10 252 49 231 324 36 28 chr1 130982655 130982794 -151210870 - MIR SINE MIR -63 145 33 1286 164 28 0 chr1 130982849 130983062 -151210602 - MER20 DNA MER1_type 0 219 1 226 286 61 41 chr1 130983083 130983181 -151210483 + L2 LINE L2 1751 1850 -1464 196 291 0 0 chr1 130983301 130983356 -151210308 - L2 LINE L2 -1 3271 3217 222 179 0 0 chr1 130983374 130983413 -151210251 + L2 LINE L2 3264 3302 -11 200 143 24 24 chr1 130983425 130983467 -151210197 + (ATAAG)n Simple_repeat Simple_repeat 3 44 0 330 317 103 60 chr1 130983589 130983958 -151209706 + HAL1 LINE L1 889 1273 -1234 700 296 111 33 chr1 130983984 130984387 -151209277 - L2 LINE L2 -8 3305 2847 207 0 0 0 chr1 130984387 130984410 -151209254 + (TG)n Simple_repeat Simple_repeat 1 23 0 700 296 111 33 chr1 130984410 130984519 -151209145 - L2 LINE L2 -466 2847 2748 411 250 0 10 chr1 130984586 130984729 -151208935 + HAL1b LINE L1 337 1547 -872 812 188 76 51 chr1 130984737 130984831 -151208833 + MIR SINE MIR 40 130 -132 1684 159 132 9 chr1 130984831 130985165 -151208499 + THE1C LTR MaLR 1 375 0 812 188 76 51 chr1 130985165 130985267 -151208397 + MIR SINE MIR 130 241 -21 889 263 150 78 chr1 130985286 130985656 -151208008 + L1M4 LINE L1 2677 3019 -3127 1464 203 18 14 chr1 130985656 130985942 -151207722 + AluJo SINE Alu 1 287 -25 889 263 150 78 chr1 130985942 130986324 -151207340 + L1M4 LINE L1 3019 3483 -2663 334 260 71 47 chr1 130987816 130987943 -151205721 + L2 LINE L2 3168 3297 -16 186 43 0 0 chr1 130989289 130989312 -151204352 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 201 279 63 72 chr1 130991657 130991768 -151201896 - L3 LINE CR1 -66 1511 1402 2215 94 24 0 chr1 130992008 130992296 -151201368 + AluSx SINE Alu 1 295 -17 223 237 68 0 chr1 130992602 130992661 -151201003 + L2 LINE L2 3210 3272 0 202 333 157 0 chr1 130993068 130993176 -151200488 - MIR3 SINE MIR -1 207 83 40 0 0 0 chr1 130993545 130993585 -151200079 + AT_rich Low_complexity Low_complexity 1 40 0 365 313 171 6 chr1 130993678 130993854 -151199810 + MIR SINE MIR 46 250 -12 1625 172 7 27 chr1 130996188 130996484 -151197180 + AluJo SINE Alu 1 290 -22 183 80 0 0 chr1 130998410 130998435 -151195229 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2038 321 164 33 chr1 130998580 130998872 -151194792 - L2 LINE L2 -42 3271 3018 405 0 0 0 chr1 130998872 130998917 -151194747 + (TG)n Simple_repeat Simple_repeat 1 45 0 2038 321 164 33 chr1 130998917 131000945 -151192719 - L2 LINE L2 -295 3018 628 229 267 23 12 chr1 131001231 131001317 -151192347 + (TTA)n Simple_repeat Simple_repeat 3 89 0 421 284 68 14 chr1 131001324 131001472 -151192192 - MIR SINE MIR -61 201 46 201 94 0 0 chr1 131001786 131001818 -151191846 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 244 210 227 50 chr1 131002114 131002233 -151191431 - MIR SINE MIR -73 189 50 688 183 8 0 chr1 131002584 131002704 -151190960 - FLAM_A SINE Alu -12 121 1 865 98 0 0 chr1 131004191 131004303 -151189361 - AluSc SINE Alu -15 294 183 2014 119 0 31 chr1 131004309 131004632 -151189032 + AluSx SINE Alu 1 314 0 872 257 15 38 chr1 131005895 131006160 -151187504 + MIR SINE MIR 3 261 -1 441 0 0 0 chr1 131006596 131006645 -151187019 + (CA)n Simple_repeat Simple_repeat 2 50 0 281 273 112 31 chr1 131012281 131012442 -151181222 + L3b LINE CR1 1402 1575 -8 234 284 0 0 chr1 131014148 131014229 -151179435 + (TA)n Simple_repeat Simple_repeat 1 81 0 274 322 10 15 chr1 131014860 131015089 -151178575 - L1ME4a LINE L1 -169 5952 5724 722 158 15 71 chr1 131015235 131015431 -151178233 + MER3 DNA MER1_type 20 204 -5 2067 147 21 15 chr1 131016433 131016766 -151176898 + MER1B DNA MER1_type 3 337 0 321 47 0 0 chr1 131017190 131017233 -151176431 + (TG)n Simple_repeat Simple_repeat 2 44 0 215 378 11 0 chr1 131017470 131017560 -151176104 + MIR SINE MIR 53 143 -119 571 210 216 0 chr1 131017561 131017723 -151175941 - MER20 DNA MER1_type -17 202 6 231 351 15 30 chr1 131017731 131017862 -151175802 + MIR SINE MIR 133 261 -1 664 283 113 26 chr1 131019678 131019908 -151173756 - MIR SINE MIR -7 255 6 35 54 0 0 chr1 131020245 131020301 -151173363 + AT_rich Low_complexity Low_complexity 1 56 0 6942 134 26 25 chr1 131020301 131021258 -151172406 - L1MA5 LINE L1 -12 6288 5333 2471 62 0 26 chr1 131021258 131021567 -151172097 - AluY SINE Alu -10 301 1 6942 134 26 25 chr1 131021567 131022270 -151171394 - L1MA5 LINE L1 -967 5333 4632 2358 167 34 5 chr1 131022270 131022683 -151170981 - MSTB LTR MaLR 0 426 2 6942 134 26 25 chr1 131022683 131022896 -151170768 - L1MA5 LINE L1 -1668 4632 4421 2172 131 0 0 chr1 131022896 131023194 -151170470 + AluSc SINE Alu 1 298 -11 6942 134 26 25 chr1 131023194 131023565 -151170099 - L1MA5 LINE L1 -1879 4421 4041 972 163 23 6 chr1 131024389 131024561 -151169103 + MER5A DNA MER1_type 12 186 -3 632 207 13 4 chr1 131024812 131025032 -151168632 + CT-rich Low_complexity Low_complexity 1 221 0 370 342 21 42 chr1 131025420 131025610 -151168054 + MER5A DNA MER1_type 1 186 -3 334 162 40 0 chr1 131025653 131025727 -151167937 + MER81 DNA DNA 37 113 -1 186 250 0 0 chr1 131025993 131026029 -151167635 - L2 LINE L2 -21 3292 3257 846 307 134 9 chr1 131026395 131026819 -151166845 + L2 LINE L2 2832 3308 -5 351 254 84 110 chr1 131027122 131027421 -151166243 - L2 LINE L2 -3 3269 2979 2156 104 0 4 chr1 131027960 131028263 -151165401 - AluSc SINE Alu 0 302 1 230 360 12 49 chr1 131028563 131028727 -151164937 + MER5A DNA MER1_type 13 170 -19 496 255 68 0 chr1 131029209 131029370 -151164294 + L1ME LINE L1 5495 5666 -455 231 176 0 0 chr1 131029625 131029676 -151163988 + L1ME4a LINE L1 6060 6110 -11 323 301 66 55 chr1 131029800 131030056 -151163608 + L2 LINE L2 2718 2976 -338 191 235 0 20 chr1 131030236 131030287 -151163377 + L2 LINE L2 3223 3272 0 204 344 86 46 chr1 131030318 131030469 -151163195 + MER91A DNA MER1_type 18 174 -22 519 17 0 0 chr1 131030564 131030624 -151163040 + (TG)n Simple_repeat Simple_repeat 1 60 0 437 49 0 16 chr1 131030819 131030880 -151162784 + (TG)n Simple_repeat Simple_repeat 1 60 0 487 254 40 60 chr1 131031369 131031570 -151162094 + MIR SINE MIR 21 217 -45 375 23 0 0 chr1 131032235 131032279 -151161385 + (TG)n Simple_repeat Simple_repeat 2 45 0 183 91 114 68 chr1 131033191 131033235 -151160429 - L2 LINE L2 0 3313 3268 245 295 200 0 chr1 131033714 131033809 -151159855 + L2 LINE L2 3153 3266 -6 198 167 0 0 chr1 131033973 131034009 -151159655 + (CA)n Simple_repeat Simple_repeat 1 36 0 249 330 9 18 chr1 131034236 131034345 -151159319 - L2 LINE L2 0 3313 3206 5280 146 26 63 chr1 131034462 131035268 -151158396 + L1MA7 LINE L1 5223 6008 -283 2147 154 79 17 chr1 131035268 131035671 -151157993 + MSTC LTR MaLR 1 428 0 5280 146 26 63 chr1 131035671 131035945 -151157719 + L1MA7 LINE L1 6008 6291 0 493 265 254 49 chr1 131035992 131036445 -151157219 + L2 LINE L2 2429 2974 -340 347 245 68 80 chr1 131036561 131036724 -151156940 + L2 LINE L2 3152 3312 -1 282 242 63 0 chr1 131036733 131036828 -151156836 + MER113 DNA MER1_type? 6 106 -415 200 329 29 14 chr1 131037062 131037132 -151156532 + MIR SINE MIR 68 138 -70 29 0 0 0 chr1 131037217 131037246 -151156418 + AT_rich Low_complexity Low_complexity 1 29 0 2560 159 57 0 chr1 131037487 131037947 -151155717 + L1MB2 LINE L1 5686 6171 0 921 273 40 8 chr1 131038037 131038290 -151155374 - MIR SINE MIR 0 262 2 562 235 0 15 chr1 131038866 131038998 -151154666 + FLAM_C SINE Alu 2 131 -2 31 68 0 0 chr1 131041083 131041142 -151152522 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr1 131041165 131041189 -151152475 + AT_rich Low_complexity Low_complexity 1 24 0 202 234 21 0 chr1 131042511 131042558 -151151106 - L2 LINE L2 0 3313 3266 2567 130 72 68 chr1 131043622 131044138 -151149526 - LTR12 LTR ERV1 -196 518 1 240 196 143 0 chr1 131046416 131046472 -151147192 + L2 LINE L2 3209 3272 0 215 308 103 0 chr1 131047148 131047255 -151146409 + L2 LINE L2 3189 3306 -7 392 242 0 42 chr1 131047645 131047740 -151145924 + MIR3 SINE MIR 94 184 -24 441 278 188 0 chr1 131048659 131048803 -151144861 - MIR SINE MIR -6 256 86 2296 101 13 3 chr1 131049012 131049320 -151144344 + AluY SINE Alu 1 311 0 217 260 63 55 chr1 131051660 131051787 -151141877 + L2 LINE L2 3180 3307 -6 565 270 69 0 chr1 131052466 131052625 -151141039 - MER63A DNA MER1_type -38 172 3 735 237 107 23 chr1 131053089 131053304 -151140360 + MIR SINE MIR 2 234 -28 236 175 25 0 chr1 131054420 131054460 -151139204 + L2 LINE L2 3223 3263 -9 302 276 115 45 chr1 131054790 131054946 -151138718 + MIR SINE MIR 46 212 -50 2396 60 7 0 chr1 131056982 131057280 -151136384 - AluY SINE Alu -11 300 1 230 260 0 0 chr1 131057381 131057431 -151136233 - L2 LINE L2 -1399 1915 1866 200 327 106 71 chr1 131057710 131057823 -151135841 + MIR3 SINE MIR 8 124 -84 206 266 164 31 chr1 131057856 131057984 -151135680 - L2 LINE L2 -1 3312 3168 244 268 12 0 chr1 131058201 131058283 -151135381 - L1ME LINE L1 -280 5890 5808 214 360 166 7 chr1 131058639 131058778 -151134886 - L2 LINE L2 -92 3180 3020 217 341 129 45 chr1 131059244 131059777 -151133887 + L2 LINE L2 1803 2380 -934 182 239 163 54 chr1 131060238 131060330 -151133334 + MIR SINE MIR 86 187 -75 570 266 70 7 chr1 131060603 131060746 -151132918 - MER5A DNA MER1_type -18 171 20 664 212 18 24 chr1 131060754 131060924 -151132740 + LTR9 LTR ERV1 444 612 0 2481 57 7 0 chr1 131061087 131061388 -151132276 - AluY SINE Alu -8 303 1 25 51 0 0 chr1 131062229 131062268 -151131396 + AT_rich Low_complexity Low_complexity 1 39 0 345 302 20 69 chr1 131063121 131063175 -151130489 - L2 LINE L2 -757 2557 2502 2340 166 21 12 chr1 131063175 131063597 -151130067 + MSTA LTR MaLR 1 426 -2 345 302 20 69 chr1 131063597 131063744 -151129920 - L2 LINE L2 -812 2502 2366 222 348 21 28 chr1 131064361 131064502 -151129162 - L2 LINE L2 -460 2854 2715 21 36 0 0 chr1 131064564 131064592 -151129072 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 131065319 131065351 -151128313 + AT_rich Low_complexity Low_complexity 1 32 0 381 284 67 52 chr1 131065988 131066182 -151127482 - MIR SINE MIR -12 250 54 234 152 130 0 chr1 131068519 131068565 -151125099 + L1MB3 LINE L1 400 451 -7115 1208 159 10 5 chr1 131069128 131069323 -151124341 + AluJb SINE Alu 105 300 -12 240 245 11 47 chr1 131069326 131069419 -151124245 + L1MB3 LINE L1 1547 1862 -5705 3436 212 49 22 chr1 131069449 131070361 -151123303 + L1MB3 LINE L1 1960 2864 -4703 2153 110 3 0 chr1 131070467 131070771 -151122893 - AluSx SINE Alu 0 305 1 14061 186 40 24 chr1 131070772 131072566 -151121098 + L1MA4 LINE L1 2658 4421 -3298 1880 172 16 50 chr1 131072566 131072943 -151120721 - THE1B LTR MaLR 0 364 1 14061 186 40 24 chr1 131072943 131073604 -151120060 + L1MA4 LINE L1 4421 5070 -2649 294 27 0 0 chr1 131073604 131073641 -151120023 + MADE1 DNA Mariner 44 80 0 14061 186 40 24 chr1 131073641 131076184 -151117480 + L1MA4 LINE L1 5070 7719 0 302 231 58 29 chr1 131076191 131076295 -151117369 + L1MB3 LINE L1 2902 3008 -4559 2081 193 42 41 chr1 131076308 131077002 -151116662 + L1MB3 LINE L1 3114 3809 -3756 752 177 0 199 chr1 131077004 131077275 -151116389 + L1MB3 LINE L1 6806 7022 -688 686 176 34 0 chr1 131077276 131077395 -151116269 + FLAM_C SINE Alu 3 125 -18 1831 161 159 11 chr1 131077395 131077773 -151115891 + L1MB3 LINE L1 7018 7451 -151 218 403 13 19 chr1 131078150 131078304 -151115360 + L2 LINE L2 2937 3089 -183 22 35 0 0 chr1 131079637 131079666 -151113998 + AT_rich Low_complexity Low_complexity 1 29 0 382 295 54 42 chr1 131080938 131081179 -151112485 - L3 LINE CR1 -71 1506 1263 219 253 228 0 chr1 131081347 131081426 -151112238 - MIR SINE MIR 0 262 166 794 111 8 0 chr1 131082113 131082239 -151111425 - MER2 DNA MER2_type -136 209 83 257 231 0 0 chr1 131082239 131082291 -151111373 + LTR30 LTR ERV1 1 52 -670 1709 119 20 204 chr1 131082302 131082702 -151110962 + LTR12 LTR ERV1 68 355 -359 2052 103 6 45 chr1 131082702 131083013 -151110651 - AluY SINE Alu -10 301 3 1709 119 20 204 chr1 131083013 131083123 -151110541 + LTR12 LTR ERV1 355 484 -230 357 221 12 70 chr1 131083124 131083210 -151110454 - MER2 DNA MER2_type -264 81 1 408 205 90 74 chr1 131084034 131084156 -151109508 + MLT1J2 LTR MaLR 1 124 -326 243 250 68 11 chr1 131084315 131084403 -151109261 + MLT1J2 LTR MaLR 353 445 -5 512 276 256 21 chr1 131087334 131087768 -151105896 - L2 LINE L2 -878 2436 1901 5480 166 45 17 chr1 131087915 131089581 -151104083 + L1MA4 LINE L1 4521 6300 0 2188 79 20 3 chr1 131089669 131089961 -151103703 - AluY SINE Alu -14 297 1 267 54 0 0 chr1 131090623 131090660 -151103004 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 612 283 23 46 chr1 131091150 131091369 -151102295 + MIR SINE MIR 47 260 -2 4441 183 112 26 chr1 131091369 131092552 -151101112 - L1MC3 LINE L1 -1 7784 6500 488 286 42 0 chr1 131092583 131092702 -151100962 - L2 LINE L2 0 3272 3149 616 265 70 18 chr1 131093332 131093788 -151099876 - L1MEd LINE L1 -2870 3259 2780 502 235 116 99 chr1 131093819 131094181 -151099483 - L1MEd LINE L1 -5126 993 626 380 265 90 98 chr1 131094231 131094476 -151099188 - L1MEd LINE L1 -5612 507 265 364 309 46 11 chr1 131094526 131094701 -151098963 - L1MEd LINE L1 -5935 184 4 369 187 0 0 chr1 131096567 131096642 -151097022 + CT-rich Low_complexity Low_complexity 1 75 0 266 0 29 0 chr1 131097231 131097265 -151096399 + (TG)n Simple_repeat Simple_repeat 1 35 0 1973 163 53 0 chr1 131097503 131097864 -151095800 - MSTA LTR MaLR 0 428 49 1810 111 114 14 chr1 131098001 131098281 -151095383 - AluSx SINE Alu -3 309 2 251 159 0 0 chr1 131098282 131098326 -151095338 - MSTA LTR MaLR -374 54 11 29297 28 3 1 chr1 131098679 131103148 -151090516 + L1PA2 LINE L1 1675 6147 -8 1034 118 59 0 chr1 131103148 131103301 -151090363 + AluSg/x SINE Alu 121 282 -30 236 167 14 0 chr1 131103321 131103393 -151090271 + (TA)n Simple_repeat Simple_repeat 2 74 0 298 315 55 79 chr1 131104058 131104224 -151089440 + L2 LINE L2 2148 2307 -1007 372 22 0 0 chr1 131104224 131104269 -151089395 + (CA)n Simple_repeat Simple_repeat 2 46 0 298 315 55 79 chr1 131104269 131104356 -151089308 + L2 LINE L2 2307 2395 -919 271 305 25 105 chr1 131104381 131104581 -151089083 - L2 LINE L2 -79 3193 3010 587 265 29 34 chr1 131104899 131105103 -151088561 - LTR52 LTR ERVL -218 203 1 1269 222 0 8 chr1 131105103 131105369 -151088295 - LTR52-int LTR ERVL 0 3556 3293 2437 153 12 2 chr1 131105549 131105962 -151087702 - MSTA LTR MaLR -11 417 1 363 304 45 0 chr1 131107460 131107661 -151086003 + L1ME4a LINE L1 5737 5946 -175 541 292 116 4 chr1 131108322 131108538 -151085126 - MIR SINE MIR -14 248 2 315 346 74 52 chr1 131109113 131109422 -151084242 - L2 LINE L2 -40 3232 2917 326 146 0 0 chr1 131109812 131109867 -151083797 - MLT2A1 LTR ERVL 0 453 399 2684 91 20 8 chr1 131109895 131110293 -151083371 - MLT2A1 LTR ERVL -41 403 1 404 292 13 94 chr1 131110717 131110950 -151082714 - MIR SINE MIR 0 262 49 197 289 149 25 chr1 131111023 131111144 -151082520 + L2 LINE L2 3164 3299 -14 347 147 29 0 chr1 131111928 131111996 -151081668 - MER116 DNA Mariner -5 75 6 258 208 111 14 chr1 131112001 131112073 -151081591 - MIR SINE MIR -183 79 1 228 67 0 0 chr1 131112419 131112449 -151081215 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 305 283 158 40 chr1 131113084 131113236 -151080428 + L3 LINE CR1 1407 1576 -1 324 320 76 15 chr1 131113360 131113557 -151080107 - L1ME4a LINE L1 -157 5964 5756 2058 150 0 0 chr1 131113558 131113858 -151079806 - AluJo SINE Alu -12 300 1 369 204 39 10 chr1 131113967 131114070 -151079594 - L1ME4a LINE L1 -490 5631 5526 326 317 75 43 chr1 131114219 131114380 -151079284 + MIR SINE MIR 8 173 -89 213 94 0 0 chr1 131115031 131115063 -151078601 + (TC)n Simple_repeat Simple_repeat 2 33 0 396 330 129 5 chr1 131115936 131116145 -151077519 + MIR SINE MIR 23 257 -5 292 224 224 48 chr1 131116892 131117017 -151076647 - MER5A DNA MER1_type -42 147 1 184 352 76 0 chr1 131117017 131117119 -151076545 + L2 LINE L2 3189 3298 -15 369 268 33 13 chr1 131117577 131117730 -151075934 + L1ME4a LINE L1 5564 5719 -402 315 300 117 41 chr1 131117744 131118034 -151075630 + L1ME4a LINE L1 5743 6054 -67 395 335 7 17 chr1 131119035 131119183 -151074481 - MIR3 SINE MIR -48 160 15 363 288 76 27 chr1 131120451 131120619 -151073045 - MIR SINE MIR -65 143 12 221 283 0 0 chr1 131122099 131122159 -151071505 + (TG)n Simple_repeat Simple_repeat 1 60 0 205 200 0 0 chr1 131122207 131122247 -151071417 + (TA)n Simple_repeat Simple_repeat 2 41 0 268 256 218 13 chr1 131122327 131122483 -151071181 - L1MC4 LINE L1 -166 7876 7689 1684 152 105 0 chr1 131122603 131122918 -151070746 - MER47A DNA MER2_type -15 351 4 387 291 57 46 chr1 131123233 131123992 -151069672 - L1MEd LINE L1 -4548 1581 821 244 315 14 70 chr1 131125683 131125826 -151067838 - MIR SINE MIR -77 185 51 2387 97 7 0 chr1 131125901 131126210 -151067454 - AluY SINE Alu 0 311 1 7901 40 2 2 chr1 131126263 131128045 -151065619 + L1PA5 LINE L1 4349 6131 -23 237 258 68 0 chr1 131128182 131128314 -151065350 + L1ME4a LINE L1 5978 6118 -3 1017 188 28 0 chr1 131128767 131128943 -151064721 + FRAM SINE Alu 1 174 -2 249 297 123 43 chr1 131129715 131129853 -151063811 + MIR SINE MIR 78 226 -36 372 344 8 24 chr1 131129912 131130037 -151063627 + MIR SINE MIR 21 143 -65 2123 102 3 23 chr1 131130118 131130422 -151063242 + AluSx SINE Alu 1 298 -14 308 213 27 0 chr1 131132651 131132726 -151060938 + MLT1J LTR MaLR 108 184 -327 569 276 75 35 chr1 131132726 131132954 -151060710 + MLT1I LTR MaLR 170 406 -3 847 237 19 24 chr1 131133069 131133276 -151060388 - MER63A DNA MER1_type -2 208 3 261 100 0 0 chr1 131133276 131133326 -151060338 + L1MA7 LINE L1 6242 6291 0 21 0 0 0 chr1 131133326 131133347 -151060317 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 131133633 131133656 -151060008 + AT_rich Low_complexity Low_complexity 1 23 0 4266 140 23 53 chr1 131133656 131134523 -151059141 - L1MA3 LINE L1 -5 6300 5460 960 219 66 58 chr1 131134541 131134783 -151058881 + AluJo SINE Alu 46 289 -23 5573 163 44 106 chr1 131134783 131135953 -151057711 - L1MA3 LINE L1 -746 5400 4442 2426 88 0 0 chr1 131135953 131136258 -151057406 + AluY SINE Alu 1 305 -6 5573 163 44 106 chr1 131136258 131136700 -151056964 - L1MA3 LINE L1 -1704 4442 3974 338 276 20 0 chr1 131137634 131137732 -151055932 + MIR3 SINE MIR 103 202 -6 224 290 126 126 chr1 131137783 131137997 -151055667 - L2 LINE L2 -4 3268 3055 303 222 0 0 chr1 131138042 131138087 -151055577 - MER96 DNA MER1_type? -1 174 127 2196 40 18 32 chr1 131138087 131138365 -151055299 - AluY SINE Alu -14 297 24 303 222 0 0 chr1 131138365 131138382 -151055282 - MER96 DNA MER1_type? -47 128 112 476 332 105 40 chr1 131138542 131139208 -151054456 - L2 LINE L2 -454 2860 2152 414 0 0 0 chr1 131140101 131140147 -151053517 + (TG)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr1 131140146 131140167 -151053497 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 611 255 172 10 chr1 131140769 131140978 -151052686 + MIR SINE MIR 16 249 -13 21 0 0 0 chr1 131143226 131143247 -151050417 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr1 131143692 131143735 -151049929 + (CA)n Simple_repeat Simple_repeat 1 43 0 410 272 57 19 chr1 131143743 131143901 -151049763 + MER112 DNA MER1_type 97 260 0 181 273 239 0 chr1 131145634 131145722 -151047942 - L3 LINE CR1 -1457 120 12 1741 177 0 14 chr1 131146562 131146850 -151046814 + AluJb SINE Alu 2 285 -27 330 132 0 0 chr1 131147270 131147323 -151046341 + (CA)n Simple_repeat Simple_repeat 2 54 0 697 125 0 33 chr1 131147621 131147741 -151045923 + L1PBa LINE L1 3 118 -6745 1138 159 61 209 chr1 131147741 131148282 -151045382 + LTR12 LTR ERV1 36 496 -218 31009 113 9 15 chr1 131148290 131153598 -151040066 + HERV9 LTR ERV1 54 5410 -2989 10171 108 5 17 chr1 131153577 131155060 -151038604 + HERV9 LTR ERV1 6934 8399 0 * 270 231 0 0 chr1 131155060 131155112 -151038552 + LTR30 LTR ERV1 1 52 -670 917 138 25 146 chr1 131155112 131155420 -151038244 + LTR12 LTR ERV1 55 277 -437 320 273 10 0 chr1 131155420 131155519 -151038145 + LTR30 LTR ERV1 544 643 -79 730 129 0 0 chr1 131155520 131155621 -151038043 + LTR12 LTR ERV1 481 581 -133 13326 198 65 20 chr1 131155621 131157975 -151035689 + L1PB1 LINE L1 718 2964 -3903 243 0 0 0 chr1 131157975 131158002 -151035662 + (CAA)n Simple_repeat Simple_repeat 1 27 0 13326 198 65 20 chr1 131158002 131160161 -151033503 + L1PB1 LINE L1 2964 5024 -1843 1669 177 83 14 chr1 131160161 131160512 -151033152 + THE1C LTR MaLR 1 375 0 10851 122 25 28 chr1 131160512 131162098 -151031566 + THE1C-int LTR MaLR 1 1580 0 2154 132 67 17 chr1 131162098 131162455 -151031209 + THE1C LTR MaLR 1 375 0 13326 198 65 20 chr1 131162455 131163292 -151030372 + L1PB1 LINE L1 5024 5822 -1045 238 135 0 19 chr1 131163292 131163344 -151030320 - LTR66 LTR ERVL -166 444 394 13326 198 65 20 chr1 131163344 131163739 -151029925 + L1PB1 LINE L1 5822 6864 -3 29 0 0 0 chr1 131163740 131163769 -151029895 + AT_rich Low_complexity Low_complexity 1 29 0 1814 299 87 71 chr1 131164227 131165282 -151028382 + L2 LINE L2 315 1386 -1928 1207 157 0 5 chr1 131165341 131165532 -151028132 + MLT1B LTR MaLR 32 221 -169 212 0 36 0 chr1 131165874 131165902 -151027762 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1024 173 12 0 chr1 131166146 131166319 -151027345 + MLT1B LTR MaLR 216 390 0 2621 306 104 15 chr1 131166320 131167712 -151025952 + L2 LINE L2 1592 3104 -209 2058 149 0 0 chr1 131168554 131168856 -151024808 - AluJo SINE Alu -10 302 1 202 362 0 0 chr1 131170107 131170176 -151023488 - L2 LINE L2 -1 3312 3244 231 301 4 0 chr1 131170741 131170819 -151022845 + MIR SINE MIR 59 136 -93 1608 161 33 20 chr1 131171339 131171643 -151022021 - AluJo SINE Alu -4 308 1 1178 128 6 0 chr1 131173030 131173202 -151020462 + L1MA2 LINE L1 6132 6304 0 210 219 0 0 chr1 131173663 131173704 -151019960 - MIR SINE MIR -13 249 209 204 248 192 24 chr1 131173709 131173834 -151019830 - L2 LINE L2 -93 3220 3075 309 320 0 8 chr1 131173851 131173973 -151019691 - MER5A DNA MER1_type -68 121 1 36 0 0 0 chr1 131174690 131174726 -151018938 + AT_rich Low_complexity Low_complexity 1 36 0 484 310 108 26 chr1 131175057 131175483 -151018181 + L3 LINE CR1 906 1366 -211 * 848 269 46 9 chr1 131175475 131175694 -151017970 + MIR SINE MIR 15 241 -21 329 266 168 14 chr1 131176210 131176353 -151017311 - L2 LINE L2 -1 3271 3107 217 256 73 61 chr1 131176774 131176856 -151016808 + MIR3 SINE MIR 110 192 -16 182 308 51 51 chr1 131177184 131177340 -151016324 - L3 LINE CR1 -727 850 695 234 222 105 56 chr1 131177568 131177700 -151015964 - MIR SINE MIR -39 169 27 236 309 52 44 chr1 131179162 131179298 -151014366 - L3 LINE CR1 -4 1573 1437 23 0 0 0 chr1 131179302 131179325 -151014339 + AT_rich Low_complexity Low_complexity 1 23 0 2010 170 33 33 chr1 131181183 131181548 -151012116 + MLT1A1 LTR MaLR 1 365 0 396 296 116 17 chr1 131181669 131181841 -151011823 - MER5A DNA MER1_type 0 189 1 943 251 74 19 chr1 131181964 131182275 -151011389 + L2 LINE L2 2553 2880 -434 597 159 0 0 chr1 131185050 131185138 -151008526 - 5S rRNA rRNA -33 88 1 393 335 135 15 chr1 131185180 131185446 -151008218 + L2 LINE L2 2811 3108 -164 309 255 19 57 chr1 131185453 131185559 -151008105 - L2 LINE L2 0 3313 3212 3049 206 28 3 chr1 131185604 131186255 -151007409 + L1PA15 LINE L1 4470 5136 -1010 1706 157 55 0 chr1 131186254 131186547 -151007117 + L1PA15 LINE L1 5624 5932 -233 * 2900 163 31 4 chr1 131186255 131186776 -151006888 + L1PA15 LINE L1 5624 6159 -6 661 103 9 0 chr1 131186908 131187015 -151006649 - L1P4 LINE L1 -654 5514 5407 2095 115 7 3 chr1 131187690 131187985 -151005679 - AluSg SINE Alu -14 296 1 180 0 0 0 chr1 131188542 131188562 -151005102 + (T)n Simple_repeat Simple_repeat 1 20 0 612 226 82 41 chr1 131188994 131189237 -151004427 - Charlie7 DNA MER1_type -2051 561 309 24 32 0 0 chr1 131189394 131189425 -151004239 + AT_rich Low_complexity Low_complexity 1 31 0 722 297 10 5 chr1 131189545 131189747 -151003917 + MIR SINE MIR 41 243 -19 209 227 0 0 chr1 131189756 131189800 -151003864 + (TTA)n Simple_repeat Simple_repeat 2 45 0 203 318 47 28 chr1 131190039 131190146 -151003518 + MIR SINE MIR 118 226 -36 201 271 86 14 chr1 131190739 131190809 -151002855 + MIR SINE MIR 8 82 -180 182 371 132 24 chr1 131192006 131192173 -151001491 + L2 LINE L2 3076 3260 -12 226 375 48 18 chr1 131192785 131192953 -151000711 - MLT1L LTR MaLR -76 539 367 198 0 0 0 chr1 131193016 131193038 -151000626 + (T)n Simple_repeat Simple_repeat 1 22 0 1554 155 8 4 chr1 131193044 131193283 -151000381 - AluSx SINE Alu -70 242 3 461 274 76 6 chr1 131193428 131193602 -151000062 - MLT1L LTR MaLR -319 269 86 816 212 33 33 chr1 131193852 131194093 -150999571 + HsTC2 DNA Tc2 434 674 -1224 571 212 188 8 chr1 131194106 131194361 -150999303 + HsTC2 DNA Tc2 1516 1816 -82 549 262 7 0 chr1 131197074 131197223 -150996441 - L1MA10 LINE L1 -10 6324 6175 1879 143 30 6 chr1 131197237 131197573 -150996091 + MER47A DNA MER2_type 1 344 -22 414 240 64 32 chr1 131197674 131197799 -150995865 + MIR SINE MIR 59 187 -75 2190 185 53 32 chr1 131197955 131198448 -150995216 - MLT1D LTR MaLR 0 505 3 1582 164 202 16 chr1 131199402 131199773 -150993891 + MLT2B1 LTR ERVL 3 442 -78 507 84 28 0 chr1 131200835 131200906 -150992758 - AluSp SINE Alu -178 135 63 518 259 114 76 chr1 131201175 131201465 -150992199 - L2 LINE L2 -56 3257 2957 990 113 0 35 chr1 131201667 131201809 -150991855 + AluSq/x SINE Alu 1 137 -175 10909 56 83 5 chr1 131201812 131203343 -150990321 + L1P LINE L1 6 1656 -4490 318 368 19 0 chr1 131254098 131254204 -150939460 + L2 LINE L2 3147 3254 -18 862 283 144 31 chr1 131254356 131254643 -150939021 - LTR33 LTR ERVL -2 519 167 2229 104 0 0 chr1 131254643 131254941 -150938723 + AluSq SINE Alu 1 298 -15 862 283 144 31 chr1 131254941 131255077 -150938587 - LTR33 LTR ERVL -354 167 48 217 331 21 23 chr1 131256603 131256753 -150936911 - MIR SINE MIR -26 236 50 259 387 30 6 chr1 131257169 131257337 -150936327 + ERVL LTR ERVL 3654 3825 -1939 617 307 63 41 chr1 131257435 131257849 -150935815 + ERVL LTR ERVL 3535 3957 -1039 1458 163 31 20 chr1 131258053 131258347 -150935317 + L1MA8 LINE L1 5987 6283 -8 392 331 61 36 chr1 131258386 131258725 -150934939 + LTR16A LTR ERVL 44 441 -9 204 192 39 19 chr1 131259854 131259906 -150933758 + G-rich Low_complexity Low_complexity 1 53 0 319 217 179 43 chr1 131260358 131260542 -150933122 - L1ME3A LINE L1 -7 6232 6024 1428 222 7 3 chr1 131260542 131260826 -150932838 + MLT1A1 LTR MaLR 1 285 -80 1208 100 119 33 chr1 131260826 131261036 -150932628 - MER30 DNA MER1_type 0 230 3 660 124 0 0 chr1 131261036 131261133 -150932531 + L1PA5 LINE L1 2 98 -6048 * 37510 55 2 0 chr1 131261131 131266651 -150927013 + L1PA5 LINE L1 623 6154 0 431 248 10 0 chr1 131266662 131266763 -150926901 + MLT1A1 LTR MaLR 264 365 0 1767 266 112 25 chr1 131266763 131268155 -150925509 - L1ME3A LINE L1 -211 6028 4508 2078 258 99 27 chr1 131268200 131273188 -150920476 + L1ME2 LINE L1 550 6027 -71 186 43 0 0 chr1 131273292 131273315 -150920349 + (CA)n Simple_repeat Simple_repeat 2 24 0 495 296 55 68 chr1 131273359 131273757 -150919907 - L1ME3A LINE L1 -3873 2523 2131 189 0 0 0 chr1 131273819 131273840 -150919824 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 750 238 0 18 chr1 131273843 131274007 -150919657 - AluJo SINE Alu -30 282 122 264 261 0 34 chr1 131274547 131274635 -150919029 - MIR SINE MIR -46 216 132 683 296 93 17 chr1 131276586 131277187 -150916477 + L1M4 LINE L1 2699 3345 -2801 510 206 10 10 chr1 131277371 131277493 -150916171 - FLAM_A SINE Alu 0 139 18 443 325 94 10 chr1 131277978 131278181 -150915483 - MIR SINE MIR -36 226 7 297 273 159 8 chr1 131278351 131278483 -150915181 + MIR SINE MIR 40 191 -71 308 200 80 88 chr1 131278548 131278673 -150914991 - MIR SINE MIR -41 221 98 210 177 32 65 chr1 131279249 131279311 -150914353 + GA-rich Low_complexity Low_complexity 2 61 0 5776 215 51 64 chr1 131279971 131281580 -150912084 - L1MB7 LINE L1 -1 6183 4553 2359 95 0 0 chr1 131281580 131281874 -150911790 + AluY SINE Alu 1 294 -17 5776 215 51 64 chr1 131281874 131282013 -150911651 - L1MB7 LINE L1 -1631 4553 4414 5354 135 16 2 chr1 131282013 131283269 -150910395 - L1PA16 LINE L1 -15 6151 4883 5776 215 51 64 chr1 131283269 131284182 -150909482 - L1MB7 LINE L1 -1770 4414 3577 1320 214 128 25 chr1 131284182 131284541 -150909123 - MSTD LTR MaLR 0 396 1 5776 215 51 64 chr1 131284541 131284944 -150908720 - L1MB7 LINE L1 -2607 3577 3170 2028 111 42 10 chr1 131284965 131285254 -150908410 - AluY SINE Alu -13 298 1 1934 174 86 13 chr1 131285724 131286121 -150907543 + MSTA LTR MaLR 1 426 -2 5591 153 12 35 chr1 131286125 131287181 -150906483 + MSTA-int LTR MaLR 3 1082 -498 2352 135 5 24 chr1 131287181 131287552 -150906112 - THE1B LTR MaLR 0 364 1 11291 109 5 2 chr1 131287552 131289128 -150904536 - THE1B-int LTR MaLR 0 1580 1 2206 144 5 32 chr1 131289128 131289502 -150904162 - THE1B LTR MaLR 0 364 1 5591 153 12 35 chr1 131289502 131290068 -150903596 + MSTA-int LTR MaLR 1079 1580 0 1527 155 88 99 chr1 131290068 131290501 -150903163 + MSTA LTR MaLR 1 428 0 1292 275 47 51 chr1 131290583 131290982 -150902682 + L1ME3A LINE L1 5588 5988 -182 2570 71 0 0 chr1 131290982 131291292 -150902372 + AluY SINE Alu 1 310 -1 1292 275 47 51 chr1 131291292 131291464 -150902200 + L1ME3A LINE L1 5988 6159 -11 1197 271 44 9 chr1 131292104 131292447 -150901217 - MLT1I LTR MaLR 0 409 55 230 366 71 9 chr1 131293820 131293932 -150899732 + MIR SINE MIR 49 167 -95 2454 119 5 24 chr1 131294022 131294401 -150899263 + THE1C LTR MaLR 4 375 0 246 388 0 10 chr1 131294984 131295082 -150898582 - L2 LINE L2 -497 2817 2721 808 145 50 17 chr1 131295455 131295634 -150898030 - MER53 DNA DNA -1 188 4 1883 144 14 0 chr1 131295685 131295963 -150897701 - AluJb SINE Alu -19 293 12 28 0 0 0 chr1 131296825 131296853 -150896811 + AT_rich Low_complexity Low_complexity 1 28 0 2092 99 3 11 chr1 131298242 131298554 -150895110 - AluSq SINE Alu 0 310 1 239 368 132 0 chr1 131298594 131298700 -150894964 + L2 LINE L2 3107 3226 -46 237 65 0 0 chr1 131298962 131298993 -150894671 + (TA)n Simple_repeat Simple_repeat 1 31 0 226 156 31 47 chr1 131298993 131299057 -150894607 - L1MCa LINE L1 -4358 2068 2006 331 311 0 0 chr1 131299060 131299150 -150894514 - L1MC4 LINE L1 -1339 6703 6614 331 311 0 0 chr1 131299070 131299160 -150894504 + L1MC4 LINE L1 6614 6703 -1339 310 111 63 0 chr1 131299160 131299223 -150894441 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 288 278 0 0 chr1 131299224 131299314 -150894350 + L1MC4 LINE L1 6614 6703 -1339 401 367 101 22 chr1 131301234 131301689 -150891975 + L2 LINE L2 2571 3059 -213 2568 142 16 23 chr1 131301781 131302218 -150891446 + Tigger2a DNA MER2_type 1 434 0 644 341 0 16 chr1 131303492 131303738 -150889926 + MIR SINE MIR 14 255 -7 343 278 24 24 chr1 131304982 131305108 -150888556 + MIR SINE MIR 48 173 -89 218 320 13 0 chr1 131305132 131305210 -150888454 + CT-rich Low_complexity Low_complexity 3 81 0 461 221 215 19 chr1 131305996 131306154 -150887510 - MER5A DNA MER1_type 0 189 1 515 228 101 6 chr1 131306676 131306834 -150886830 + MIR SINE MIR 63 235 -27 258 395 38 0 chr1 131308167 131308324 -150885340 - L3 LINE CR1 -14 1563 1401 2305 102 30 24 chr1 131310211 131310584 -150883080 + THE1C LTR MaLR 1 375 0 1631 285 94 55 chr1 131310901 131312551 -150881113 + L1ME LINE L1 912 2668 -3714 22 0 0 0 chr1 131312598 131312620 -150881044 + AT_rich Low_complexity Low_complexity 1 22 0 239 310 0 0 chr1 131312835 131312893 -150880771 + L1ME LINE L1 5151 5208 -1174 520 99 64 17 chr1 131312897 131313069 -150880595 + (TA)n Simple_repeat Simple_repeat 1 180 0 565 42 90 12 chr1 131313089 131313255 -150880409 + (TA)n Simple_repeat Simple_repeat 2 180 0 309 94 87 7 chr1 131313223 131313361 -150880303 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 * 581 77 54 23 chr1 131313375 131313638 -150880026 + (TA)n Simple_repeat Simple_repeat 1 271 0 282 164 16 0 chr1 131313645 131313706 -150879958 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 1894 206 29 22 chr1 131313709 131314425 -150879239 + L1ME LINE L1 5210 5922 -480 2122 235 70 80 chr1 131315425 131315924 -150877740 + L1ME3A LINE L1 161 663 -5417 378 0 0 0 chr1 131315924 131315966 -150877698 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2122 235 70 80 chr1 131315966 131315979 -150877685 + L1ME3A LINE L1 663 675 -5405 216 67 0 0 chr1 131315979 131316009 -150877655 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 2122 235 70 80 chr1 131316009 131316478 -150877186 + L1ME3A LINE L1 675 1117 -4963 1408 139 0 0 chr1 131316487 131316681 -150876983 + AluSx SINE Alu 1 194 -118 24770 93 4 7 chr1 131316682 131321074 -150872590 + L1PA8 LINE L1 1795 6170 -2 1815 246 54 31 chr1 131321091 131321609 -150872055 + MER97b DNA MER1_type? 164 703 -350 1774 172 15 9 chr1 131321609 131321941 -150871723 + L1PA16 LINE L1 5817 6150 -16 1815 246 54 31 chr1 131321941 131322102 -150871562 + MER97b DNA MER1_type? 703 859 -194 2225 52 0 4 chr1 131322391 131322659 -150871005 + AluY SINE Alu 14 280 -31 342 0 0 0 chr1 131322659 131322697 -150870967 + (CA)n Simple_repeat Simple_repeat 1 38 0 560 188 36 0 chr1 131323372 131323484 -150870180 + MER97b DNA MER1_type? 938 1053 0 1190 250 42 25 chr1 131323937 131324297 -150869367 - L1MC/D LINE L1 -2024 5784 5419 4434 188 54 15 chr1 131324355 131326088 -150867576 - L1MB2 LINE L1 0 6171 4382 24 0 0 0 chr1 131326117 131326141 -150867523 + AT_rich Low_complexity Low_complexity 1 24 0 1968 229 178 33 chr1 131326197 131326951 -150866713 - L1MC4 LINE L1 -838 7204 6342 2130 82 0 4 chr1 131326980 131327247 -150866417 + AluSp SINE Alu 32 297 -16 49 32 0 0 chr1 131327350 131327413 -150866251 + AT_rich Low_complexity Low_complexity 1 63 0 307 313 18 12 chr1 131327493 131327656 -150866008 + L1ME3A LINE L1 2902 3065 -3015 1040 273 71 40 chr1 131327664 131328436 -150865228 + L1ME3A LINE L1 3183 3978 -2102 443 234 0 0 chr1 131328439 131328550 -150865114 - L1PB4 LINE L1 -2 6154 6044 322 164 16 0 chr1 131328551 131328612 -150865052 - L1MA4A LINE L1 -193 6110 6049 295 262 179 14 chr1 131328604 131328749 -150864915 + L1ME3A LINE L1 3964 4132 -1948 * 1928 156 43 3 chr1 131328804 131329150 -150864514 - MER46B DNA MER2_type 0 236 2 2397 270 105 56 chr1 131329236 131329941 -150863723 + L1ME3A LINE L1 4417 5086 -1018 785 111 40 8 chr1 131329941 131330067 -150863597 + L1PA15 LINE L1 6031 6160 -5 2397 270 105 56 chr1 131330067 131330961 -150862703 + L1ME3A LINE L1 5086 6096 -8 1102 291 93 23 chr1 131330990 131331868 -150861796 + L1ME3 LINE L1 5009 5955 -207 2872 102 68 0 chr1 131333871 131334314 -150859350 + L1PA14 LINE L1 5680 6152 -9 2849 10 0 0 chr1 131334650 131334961 -150858703 - AluY SINE Alu 0 311 1 289 317 24 32 chr1 131334971 131335094 -150858570 + MER5A DNA MER1_type 68 189 0 659 316 47 12 chr1 131335896 131336149 -150857515 - MIR SINE MIR 0 262 1 188 306 0 56 chr1 131336432 131336504 -150857160 + L2 LINE L2 3245 3312 -1 211 387 0 0 chr1 131336673 131336748 -150856916 - L2 LINE L2 -210 3062 2988 428 270 164 13 chr1 131337039 131337191 -150856473 - MER5A DNA MER1_type -6 183 9 263 182 36 0 chr1 131337601 131337656 -150856008 + MER103 DNA DNA 3 59 -107 269 314 69 0 chr1 131337807 131337909 -150855755 + MIR SINE MIR 90 198 -64 386 299 41 41 chr1 131338979 131339176 -150854488 + MIR SINE MIR 35 231 -31 312 307 147 6 chr1 131339604 131339767 -150853897 + MIR SINE MIR 18 203 -59 967 263 116 11 chr1 131339840 131340296 -150853368 - HAL1 LINE L1 0 2507 2004 1830 194 90 125 chr1 131340674 131340857 -150852807 + MLT1E1 LTR MaLR 22 210 -444 1736 97 0 0 chr1 131340857 131341094 -150852570 + L1PA5 LINE L1 5910 6146 -8 1830 194 90 125 chr1 131341094 131341499 -150852165 + MLT1E1 LTR MaLR 210 587 -67 2238 121 0 3 chr1 131341499 131341805 -150851859 + AluSx SINE Alu 1 305 -7 1830 194 90 125 chr1 131341805 131341871 -150851793 + MLT1E1 LTR MaLR 587 654 0 503 97 58 10 chr1 131342072 131342175 -150851489 + CT-rich Low_complexity Low_complexity 4 111 0 2133 92 7 7 chr1 131343101 131343427 -150850237 + AluSx SINE Alu 1 326 0 460 298 88 18 chr1 131345056 131345227 -150848437 + MIR3 SINE MIR 11 193 -15 236 239 15 30 chr1 131345881 131345948 -150847716 + L1MD1 LINE L1 5199 5264 -882 695 244 6 17 chr1 131345949 131346129 -150847535 + L1MD1 LINE L1 5815 5992 -250 * 947 234 15 45 chr1 131346121 131346386 -150847278 - L1ME LINE L1 -574 5852 5596 261 0 0 0 chr1 131346409 131346438 -150847226 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1308 250 67 54 chr1 131346650 131347170 -150846494 - L1ME LINE L1 -855 5551 5025 1747 234 18 8 chr1 131347175 131347676 -150845988 - L1ME LINE L1 -3037 3369 2864 700 262 70 0 chr1 131347691 131347878 -150845786 - MER58C DNA MER1_type -11 204 5 590 229 47 82 chr1 131348041 131348465 -150845199 - L1ME LINE L1 -3986 2420 2012 2713 239 54 31 chr1 131348468 131349543 -150844121 - L1MDb LINE L1 -4563 1843 776 1957 50 0 0 chr1 131349750 131349991 -150843673 - L1PA5 LINE L1 0 6154 5914 5328 40 0 0 chr1 131349991 131350667 -150842997 + L1PA5 LINE L1 5225 5900 -255 231 354 39 24 chr1 131351175 131351302 -150842362 - L1MDb LINE L1 -5937 459 331 496 267 34 7 chr1 131351363 131351509 -150842155 + L2 LINE L2 3164 3313 0 338 301 0 18 chr1 131353431 131353544 -150840120 - 7SK RNA RNA -80 113 3 201 260 13 26 chr1 131353973 131354050 -150839614 + CT-rich Low_complexity Low_complexity 3 78 0 186 333 18 0 chr1 131354591 131354648 -150839016 - MIR3 SINE MIR -19 189 132 647 283 19 30 chr1 131354693 131354962 -150838702 + L1MEd LINE L1 973 1238 -4881 263 287 0 19 chr1 131355156 131355264 -150838400 + HAL1 LINE L1 1529 1634 -873 23 54 0 0 chr1 131355561 131355598 -150838066 + AT_rich Low_complexity Low_complexity 1 37 0 1201 284 66 43 chr1 131356571 131357603 -150836061 + L1M4b LINE L1 1331 2560 -4578 1881 179 0 7 chr1 131357896 131358204 -150835460 + AluSx SINE Alu 1 306 -6 311 259 101 13 chr1 131358204 131358362 -150835302 + L1M4b LINE L1 2881 3052 -4086 2516 230 48 22 chr1 131358426 131359327 -150834337 + L1M4b LINE L1 3183 4106 -2851 832 287 65 3 chr1 131359328 131359638 -150834026 + L1M4b LINE L1 4349 4677 -2280 696 152 188 0 chr1 131359639 131359777 -150833887 + MSTA LTR MaLR 3 166 -262 9140 145 23 34 chr1 131359808 131361403 -150832261 + MSTA-int LTR MaLR 3 1580 0 2023 151 131 13 chr1 131361403 131361786 -150831878 + MSTA LTR MaLR 1 428 0 1344 226 75 50 chr1 131361786 131362168 -150831496 + L1M4b LINE L1 4672 5074 -1883 1933 146 7 0 chr1 131362168 131362462 -150831202 - AluSx SINE Alu -16 296 1 1344 226 75 50 chr1 131362462 131362642 -150831022 + L1M4b LINE L1 5074 5248 -1709 240 257 0 0 chr1 131362725 131362795 -150830869 + L1M4 LINE L1 3192 3261 -2885 2268 75 4 4 chr1 131362882 131363205 -150830459 + AluY SINE Alu 1 323 0 411 307 151 0 chr1 131363261 131363453 -150830211 + L1M2 LINE L1 5346 5566 -734 236 307 89 10 chr1 131363654 131363755 -150829909 - MER94 DNA DNA -25 109 1 544 106 21 0 chr1 131363954 131364048 -150829616 + (TA)n Simple_repeat Simple_repeat 2 97 0 34 42 0 0 chr1 131364154 131364202 -150829462 + AT_rich Low_complexity Low_complexity 1 48 0 5103 204 14 16 chr1 131364313 131365485 -150828179 + L1PB1 LINE L1 3566 4735 -1411 6237 168 4 7 chr1 131365515 131365532 -150828132 + L1PB1 LINE L1 5074 5090 -1061 2128 133 30 22 chr1 131365532 131365893 -150827771 - THE1B LTR MaLR 0 364 1 11401 103 2 11 chr1 131365893 131366211 -150827453 - THE1B-int LTR MaLR 0 1580 1261 2288 86 0 0 chr1 131366211 131366524 -150827140 + AluY SINE Alu 1 313 0 11401 103 2 11 chr1 131366524 131367798 -150825866 - THE1B-int LTR MaLR -319 1261 1 2299 130 8 22 chr1 131367799 131368167 -150825497 - THE1B LTR MaLR -1 363 1 6237 168 4 7 chr1 131368167 131369223 -150824441 + L1PB1 LINE L1 5088 6148 -3 4958 227 52 23 chr1 131370226 131373043 -150820621 - L1PBb LINE L1 -2566 4283 1338 499 328 37 53 chr1 131373036 131373335 -150820329 - L1PBb LINE L1 -5291 1558 1265 * 530 294 113 61 chr1 131373803 131374113 -150819551 - L1PBb LINE L1 -5893 957 632 557 288 12 12 chr1 131374143 131374306 -150819358 - MIR SINE MIR -54 208 46 477 248 51 22 chr1 131374623 131374760 -150818904 + MIR3 SINE MIR 66 206 -2 1993 111 0 11 chr1 131374979 131375258 -150818406 + AluSc SINE Alu 1 276 -33 249 108 0 0 chr1 131375262 131375299 -150818365 + (TAA)n Simple_repeat Simple_repeat 2 38 0 307 273 8 50 chr1 131375432 131375553 -150818111 + L1MC4a LINE L1 5834 5949 -1859 2026 100 68 4 chr1 131376361 131376642 -150817022 + AluSq SINE Alu 1 299 -14 481 382 0 0 chr1 131376671 131376841 -150816823 - MIR3 SINE MIR -7 201 32 315 335 209 5 chr1 131376858 131377049 -150816615 + MIR SINE MIR 28 257 -5 1948 150 134 11 chr1 131377181 131377562 -150816102 + MSTA LTR MaLR 1 428 0 4979 188 19 24 chr1 131377600 131379693 -150813971 + L1MB3 LINE L1 4104 6182 -1 244 371 0 0 chr1 131380233 131380303 -150813361 + L2 LINE L2 3244 3313 0 1783 192 17 62 chr1 131380444 131380866 -150812798 - MER57A LTR ERV1 0 403 1 21 36 0 0 chr1 131380871 131380899 -150812765 + AT_rich Low_complexity Low_complexity 1 28 0 244 347 42 0 chr1 131381136 131381231 -150812433 + MIR SINE MIR 23 121 -87 376 234 53 0 chr1 131381857 131381951 -150811713 - MLT1K LTR MaLR -4 584 486 467 336 14 0 chr1 131381956 131382096 -150811568 + MER63A DNA MER1_type 63 204 -6 181 369 62 0 chr1 131382103 131382168 -150811496 - L2 LINE L2 -35 3237 3169 927 289 25 0 chr1 131382307 131382542 -150811122 + MIR SINE MIR 19 259 -3 260 258 122 56 chr1 131382567 131382710 -150810954 - MIR SINE MIR -72 136 31 389 369 84 9 chr1 131382748 131382973 -150810691 - MIR SINE MIR -14 248 7 504 360 94 18 chr1 131383201 131383637 -150810027 - L2 LINE L2 -337 2977 2509 408 290 207 0 chr1 131383758 131383903 -150809761 - MIR SINE MIR -25 237 63 750 307 68 41 chr1 131383940 131384334 -150809330 + L2 LINE L2 2573 2977 -337 1162 198 9 0 chr1 131384409 131384641 -150809023 - MER96B DNA MER1_type? -183 234 1 360 250 66 52 chr1 131384642 131384778 -150808886 + L2 LINE L2 3176 3313 0 519 289 41 46 chr1 131384805 131384999 -150808665 - MIR SINE MIR -56 206 14 374 288 65 36 chr1 131385002 131385141 -150808523 + L3 LINE CR1 1434 1576 -1 278 336 60 8 chr1 131385181 131385315 -150808349 + MIR SINE MIR 120 260 -2 189 318 30 30 chr1 131385969 131386035 -150807629 + L2 LINE L2 3205 3270 -2 189 0 0 0 chr1 131386224 131386245 -150807419 + (CA)n Simple_repeat Simple_repeat 1 21 0 1317 154 50 0 chr1 131386545 131386765 -150806899 - MER46A DNA MER2_type -1 235 5 268 176 0 82 chr1 131387182 131387267 -150806397 + MLT1H LTR MaLR 13 90 -459 4752 103 28 81 chr1 131387499 131388372 -150805292 + LTR12 LTR ERV1 1 826 0 1613 161 17 95 chr1 131388388 131388813 -150804851 - MER1B DNA MER1_type -9 330 1 420 273 12 68 chr1 131388846 131389007 -150804657 + MLT1H LTR MaLR 398 549 0 541 363 118 12 chr1 131389271 131389841 -150803823 + L2 LINE L2 1253 1882 -1432 302 343 46 42 chr1 131390064 131390303 -150803361 + L1M4 LINE L1 3328 3567 -2579 242 305 43 29 chr1 131390344 131390554 -150803110 + L1M4 LINE L1 3674 3886 -2260 501 325 140 4 chr1 131390568 131390796 -150802868 - MIR SINE MIR -2 260 2 395 320 73 35 chr1 131390806 131391147 -150802517 + L1M4 LINE L1 3895 4248 -1898 610 216 27 29 chr1 131391200 131391376 -150802288 + MLT1H LTR MaLR 398 549 0 246 318 47 45 chr1 131391383 131391915 -150801749 + L1M4 LINE L1 4860 5392 -754 432 203 0 93 chr1 131391927 131392045 -150801619 + L1MC1 LINE L1 6159 6265 -68 495 294 115 63 chr1 131392078 131392630 -150801034 + L1ME3 LINE L1 5315 5884 -278 238 276 35 0 chr1 131392948 131393006 -150800658 + L2 LINE L2 3199 3258 -14 5983 114 3 3 chr1 131393724 131394621 -150799043 - L1PB1 LINE L1 0 6151 5255 201 326 11 45 chr1 131395964 131396053 -150797611 - L2 LINE L2 -1 3271 3186 545 264 119 25 chr1 131396315 131396516 -150797148 + MIR SINE MIR 12 231 -31 205 29 29 29 chr1 131398401 131398436 -150795228 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 738 190 45 34 chr1 131399117 131399296 -150794368 + MER53 DNA DNA 1 181 -8 428 294 8 0 chr1 131399678 131399797 -150793867 - MER103 DNA DNA -45 121 2 21 0 0 0 chr1 131400598 131400619 -150793045 + AT_rich Low_complexity Low_complexity 1 21 0 249 341 11 0 chr1 131401935 131402023 -150791641 - MIR SINE MIR -110 152 64 4223 66 16 0 chr1 131402335 131402880 -150790784 - MER41A LTR ERV1 0 554 1 26 30 0 0 chr1 131403231 131403264 -150790400 + AT_rich Low_complexity Low_complexity 1 33 0 195 100 0 0 chr1 131403272 131403302 -150790362 + MIR SINE MIR 124 153 -109 1458 256 26 124 chr1 131403562 131403787 -150789877 + L2 LINE L2 648 893 -2421 2155 132 0 0 chr1 131403787 131404091 -150789573 - AluY SINE Alu -7 304 1 1458 256 26 124 chr1 131404091 131404739 -150788925 + L2 LINE L2 893 1436 -1878 2450 289 85 30 chr1 131404792 131406725 -150786939 + L1MDa LINE L1 2513 4552 -1988 467 279 53 27 chr1 131406743 131406994 -150786670 + L1M4b LINE L1 14 551 -6304 8329 243 50 34 chr1 131407256 131408229 -150785435 + L1M4b LINE L1 2619 3575 -3382 2326 90 0 3 chr1 131408229 131408529 -150785135 + AluY SINE Alu 2 300 -11 8329 243 50 34 chr1 131408529 131408611 -150785053 + L1M4b LINE L1 3575 3654 -3303 5718 34 0 0 chr1 131408611 131409288 -150784376 + L1PA5 LINE L1 5469 6145 -9 8329 243 50 34 chr1 131409288 131411546 -150782118 + L1M4b LINE L1 3654 5942 -1015 1586 226 118 21 chr1 131411572 131412144 -150781520 + L1M4b LINE L1 5987 6611 -366 741 229 0 14 chr1 131412957 131413101 -150780563 - AluJb SINE Alu -24 288 147 26 50 0 0 chr1 131413255 131413295 -150780369 + AT_rich Low_complexity Low_complexity 1 40 0 22 43 0 21 chr1 131414128 131414147 -150779517 + AT_rich Low_complexity Low_complexity 1 19 -27 1666 178 0 16 chr1 131414147 131414456 -150779208 + AluJb SINE Alu 1 304 -8 22 43 0 21 chr1 131414456 131414483 -150779181 + AT_rich Low_complexity Low_complexity 19 46 0 773 305 85 8 chr1 131414559 131414818 -150778846 + L2 LINE L2 2698 2976 -338 24 32 0 0 chr1 131415788 131415819 -150777845 + AT_rich Low_complexity Low_complexity 1 31 0 183 175 53 0 chr1 131416507 131416564 -150777100 + (TA)n Simple_repeat Simple_repeat 2 61 0 183 314 0 0 chr1 131416871 131416922 -150776742 + L2 LINE L2 3206 3256 -16 310 302 163 32 chr1 131417620 131417958 -150775706 - L2 LINE L2 -1063 2251 1870 1503 214 14 0 chr1 131418063 131418368 -150775296 + AluJo SINE Alu 3 311 0 421 317 47 2 chr1 131419918 131420094 -150773570 - MIR SINE MIR -56 206 21 345 320 19 10 chr1 131420131 131420234 -150773430 + MER5A DNA MER1_type 9 112 -77 198 0 0 0 chr1 131421260 131421282 -150772382 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2261 106 3 0 chr1 131421289 131421592 -150772072 - AluSp SINE Alu -7 306 3 4437 159 36 19 chr1 131422646 131423535 -150770129 - L1MA8 LINE L1 -1 7709 6806 36840 96 10 6 chr1 131423540 131429681 -150763983 - L1PA6 LINE L1 0 6154 2 6514 163 54 66 chr1 131429688 131431328 -150762336 - L1MA8 LINE L1 -751 6814 5194 14137 30 0 0 chr1 131431337 131433778 -150759886 - L1PA3 LINE L1 -3 6152 3714 4868 48 0 0 chr1 131433778 131434396 -150759268 + L1P LINE L1 3058 3675 -2471 * 5868 230 50 34 chr1 131434390 131434485 -150759179 - L1MA8 LINE L1 -2356 5209 5117 210 37 0 0 chr1 131434485 131434512 -150759152 + (TTG)n Simple_repeat Simple_repeat 3 29 0 5868 230 50 34 chr1 131434512 131437672 -150755992 - L1MA8 LINE L1 -2448 5117 1901 990 335 39 14 chr1 131437691 131438133 -150755531 - L1MA8 LINE L1 -5828 1668 1216 1098 303 122 2 chr1 131438718 131439288 -150754376 - L2 LINE L2 0 3313 2679 450 250 0 10 chr1 131439386 131439486 -150754178 - L2 LINE L2 -1366 1948 1850 218 348 77 52 chr1 131439544 131439699 -150753965 - L2 LINE L2 0 3272 3114 2292 179 19 5 chr1 131439699 131440119 -150753545 - MSTB LTR MaLR 0 426 1 278 167 0 15 chr1 131440653 131440719 -150752945 + (TG)n Simple_repeat Simple_repeat 1 65 0 284 320 33 8 chr1 131440970 131441092 -150752572 + L3b LINE CR1 1107 1231 -352 2551 221 52 6 chr1 131441459 131442114 -150751550 + L1ME2 LINE L1 5472 6156 -8 920 288 57 68 chr1 131442129 131442715 -150750949 + L2 LINE L2 2734 3313 0 753 243 220 16 chr1 131442789 131443098 -150750566 - MLT1G1 LTR MaLR 0 595 224 2173 142 0 0 chr1 131443443 131443754 -150749910 - AluSx SINE Alu -1 311 1 874 307 33 0 chr1 131443772 131444016 -150749648 - MIR SINE MIR -10 252 1 292 317 12 0 chr1 131444041 131444123 -150749541 - MIR SINE MIR -93 169 87 2017 170 0 0 chr1 131444167 131444479 -150749185 - AluJb SINE Alu 0 312 1 267 346 216 6 chr1 131444485 131444647 -150749017 - MIR SINE MIR -51 211 16 279 0 0 0 chr1 131446566 131446597 -150747067 + (CA)n Simple_repeat Simple_repeat 2 32 0 2074 172 3 8 chr1 131446818 131447185 -150746479 + MLT1A1 LTR MaLR 1 365 0 410 280 9 32 chr1 131448101 131448242 -150745422 - MER5A DNA MER1_type -10 168 31 181 243 0 0 chr1 131448312 131448349 -150745315 - MIR SINE MIR -66 196 160 250 173 12 12 chr1 131448765 131448846 -150744818 + CT-rich Low_complexity Low_complexity 2 82 0 2154 120 28 8 chr1 131448849 131449206 -150744458 + THE1C LTR MaLR 1 364 -11 209 200 0 0 chr1 131449223 131449258 -150744406 + polypyrimidine Low_complexity Low_complexity 2 36 0 268 257 0 14 chr1 131449636 131449706 -150743958 + GA-rich Low_complexity Low_complexity 1 69 0 377 267 62 48 chr1 131449719 131449865 -150743799 + MER63A DNA MER1_type 63 210 0 186 303 61 30 chr1 131450186 131450252 -150743412 + L2 LINE L2 3180 3247 -25 933 250 5 5 chr1 131450488 131450704 -150742960 - MER58A DNA MER1_type -4 220 5 238 356 10 0 chr1 131452508 131452609 -150741055 - L2 LINE L2 -274 2998 2897 21 0 0 0 chr1 131452742 131452763 -150740901 + AT_rich Low_complexity Low_complexity 1 21 0 9628 170 21 1 chr1 131452935 131455096 -150738568 + L1PA12 LINE L1 1 2484 -5097 29241 88 11 8 chr1 131455115 131460371 -150733293 + L1PA6 LINE L1 875 6148 -6 6700 200 8 28 chr1 131460368 131461765 -150731899 + L1PA12 LINE L1 2479 3902 -3682 * 1719 80 0 0 chr1 131461765 131461977 -150731687 + AluY SINE Alu 9 220 -91 296 70 0 0 chr1 131461977 131462020 -150731644 + AluY SINE Alu 255 297 -5 6700 200 8 28 chr1 131462020 131462799 -150730865 + L1PA12 LINE L1 3900 4649 -2935 4974 10 0 0 chr1 131462775 131463361 -150730303 - L1PA2 LINE L1 -239 5916 5331 * 2219 16 0 0 chr1 131463361 131463611 -150730053 + L1PA2 LINE L1 5899 6151 -4 4233 206 29 2 chr1 131463612 131464561 -150729103 + L1PA12 LINE L1 4622 5595 -1989 1201 238 25 43 chr1 131464664 131465101 -150728563 - L1M4c LINE L1 -4729 1655 1227 252 116 0 0 chr1 131465104 131465147 -150728517 - L1M3c LINE L1 -4650 1491 1449 15450 40 1 1 chr1 131465158 131467808 -150725856 - L1PA2 LINE L1 -5 6150 3497 5561 78 76 39 chr1 131468075 131469373 -150724291 + L1PA14 LINE L1 4202 5451 -710 2004 122 0 41 chr1 131469373 131469695 -150723969 - AluSg SINE Alu 0 310 1 5561 78 76 39 chr1 131469695 131470218 -150723446 + L1PA14 LINE L1 5451 6035 -126 1844 153 0 56 chr1 131470218 131470361 -150723303 + AluSx SINE Alu 1 150 -162 324 0 0 0 chr1 131470361 131470397 -150723267 + (CA)n Simple_repeat Simple_repeat 2 37 0 1844 153 0 56 chr1 131470397 131470574 -150723090 + AluSx SINE Alu 150 303 -9 5561 78 76 39 chr1 131470574 131470703 -150722961 + L1PA14 LINE L1 6035 6158 -3 207 0 0 0 chr1 131471430 131471453 -150722211 + (CA)n Simple_repeat Simple_repeat 2 24 0 276 295 161 20 chr1 131471736 131471885 -150721779 - MIR SINE MIR -92 170 1 621 252 43 14 chr1 131472121 131472260 -150721404 + MIR SINE MIR 29 171 -91 216 286 178 18 chr1 131472835 131473015 -150720649 + MIR SINE MIR 1 208 -19 363 340 56 12 chr1 131473937 131474101 -150719563 + MIR SINE MIR 35 206 -56 210 290 48 73 chr1 131474125 131474249 -150719415 + MIR SINE MIR 87 207 -55 340 297 74 14 chr1 131474871 131475019 -150718645 + MIR SINE MIR 72 228 -34 379 275 126 24 chr1 131475084 131475251 -150718413 - MLT1E LTR MaLR -409 184 1 371 270 146 15 chr1 131476076 131476213 -150717451 + MIR SINE MIR 18 172 -90 1094 211 9 9 chr1 131476545 131476763 -150716901 - MER20 DNA MER1_type -1 218 1 1076 226 153 66 chr1 131476928 131477384 -150716280 + MLT1D LTR MaLR 1 496 -9 265 288 12 50 chr1 131477526 131477606 -150716058 - L2 LINE L2 -3 3310 3234 210 125 25 50 chr1 131477672 131477752 -150715912 + (TAAA)n Simple_repeat Simple_repeat 2 79 0 476 267 46 46 chr1 131477753 131478064 -150715600 + L1ME LINE L1 4806 5132 -1014 316 192 12 21 chr1 131478053 131478166 -150715498 + L1ME LINE L1 5353 5456 -710 * 712 283 124 49 chr1 131478308 131479097 -150714567 - L2 LINE L2 -16 3297 2470 214 200 0 55 chr1 131479354 131479409 -150714255 - L3b LINE CR1 -211 1372 1321 357 360 95 5 chr1 131480549 131480749 -150712915 - MIR SINE MIR -14 248 31 268 336 47 0 chr1 131481400 131481507 -150712157 - MIR3 SINE MIR -48 160 49 2177 244 97 14 chr1 131482468 131483454 -150710210 + L1M4 LINE L1 3608 4675 -1471 41875 41 3 0 chr1 131483483 131489623 -150704041 - L1PA3 LINE L1 0 6155 2 361 252 200 26 chr1 131489654 131489809 -150703855 + MIR SINE MIR 76 257 -5 223 399 94 34 chr1 131489821 131490530 -150703134 - L2 LINE L2 -1034 2280 1529 180 0 0 0 chr1 131490570 131490590 -150703074 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7546 143 31 9 chr1 131490592 131491978 -150701686 + L1PBa LINE L1 8 1423 -5440 16038 62 59 5 chr1 131492766 131495035 -150698629 - L1P LINE L1 -3753 2393 3 365 254 63 11 chr1 131495106 131495295 -150698369 + L1M4 LINE L1 4967 5165 -981 281 170 90 120 chr1 131495304 131495404 -150698260 + L1M3e LINE L1 -720 4294966672 -6930 2223 236 35 44 chr1 131495562 131496132 -150697532 + L1M3e LINE L1 811 1385 -4997 16673 33 6 0 chr1 131496132 131498892 -150694772 + L1PA2 LINE L1 3386 6150 -5 2223 236 35 44 chr1 131498892 131500317 -150693347 + L1M3e LINE L1 1385 2701 -3681 2522 205 44 6 chr1 131500318 131500841 -150692823 - L1MCa LINE L1 -5842 584 42 306 266 0 13 chr1 131502910 131502989 -150690675 - MER2 DNA MER2_type -1 344 267 727 195 37 32 chr1 131503016 131503206 -150690458 - MER2 DNA MER2_type -141 204 14 314 287 20 10 chr1 131503281 131503382 -150690282 - MLT1G1 LTR MaLR -64 531 430 284 181 190 17 chr1 131503396 131503481 -150690183 - MLT1G1 LTR MaLR -218 336 210 714 165 23 15 chr1 131503483 131503616 -150690048 - AluJo SINE Alu -178 134 1 605 277 25 40 chr1 131503662 131503864 -150689800 - MLT1G1 LTR MaLR -334 261 63 891 143 4 27 chr1 131503869 131504129 -150689535 + (TA)n Simple_repeat Simple_repeat 1 253 0 682 202 37 21 chr1 131504513 131504701 -150688963 - MER2 DNA MER2_type -141 204 14 314 287 20 10 chr1 131504776 131504877 -150688787 - MLT1G1 LTR MaLR -64 531 430 284 181 190 17 chr1 131504891 131504976 -150688688 - MLT1J1 LTR MaLR -218 336 210 736 158 23 15 chr1 131504978 131505111 -150688553 - AluJo SINE Alu -178 134 1 631 284 23 37 chr1 131505157 131505372 -150688292 - MLT1G1 LTR MaLR -334 261 50 235 215 25 13 chr1 131505377 131505456 -150688208 + (TA)n Simple_repeat Simple_repeat 2 81 0 382 187 0 16 chr1 131505505 131505628 -150688036 + (TA)n Simple_repeat Simple_repeat 2 122 0 287 251 80 49 chr1 131507385 131507548 -150686116 - MLT1J LTR MaLR -1 510 343 253 298 158 18 chr1 131507575 131507689 -150685975 + L2 LINE L2 3143 3272 0 244 325 0 26 chr1 131507810 131507887 -150685777 - L2 LINE L2 -219 3053 2979 434 313 44 12 chr1 131507899 131508059 -150685605 + MIR SINE MIR 17 181 -81 579 295 219 11 chr1 131508258 131508614 -150685050 - L2 LINE L2 0 3313 2884 240 295 48 9 chr1 131508617 131508722 -150684942 - MLT1J1 LTR MaLR -6 440 332 437 180 0 115 chr1 131508737 131508859 -150684805 - L1MA9 LINE L1 -38 6274 6167 324 0 0 0 chr1 131508865 131508901 -150684763 + (TG)n Simple_repeat Simple_repeat 1 36 0 473 209 9 0 chr1 131508909 131509024 -150684640 + L1MA9 LINE L1 6021 6136 -176 330 314 124 7 chr1 131509026 131509179 -150684485 - MLT1J1 LTR MaLR -194 252 82 298 289 11 21 chr1 131509295 131509410 -150684254 + GA-rich Low_complexity Low_complexity 1 113 0 430 314 109 19 chr1 131509454 131509664 -150684000 - L2 LINE L2 -574 2740 2512 709 276 23 11 chr1 131509719 131509917 -150683747 - MIR SINE MIR 0 262 54 1650 151 11 0 chr1 131509917 131510202 -150683462 - L1MA7 LINE L1 -469 5822 5535 2602 141 13 19 chr1 131510202 131510549 -150683115 + L1MA7 LINE L1 5822 6169 -122 3554 116 63 22 chr1 131510549 131511135 -150682529 - MER4B LTR ERV1 0 610 1 2602 141 13 19 chr1 131511135 131511252 -150682412 + L1MA7 LINE L1 6169 6285 -6 25 0 0 0 chr1 131511252 131511277 -150682387 + AT_rich Low_complexity Low_complexity 1 25 0 214 269 275 20 chr1 131513058 131513207 -150680457 + MIR SINE MIR 16 202 -60 648 272 12 12 chr1 131513876 131514038 -150679626 - MER5B DNA MER1_type -4 174 13 189 271 129 59 chr1 131514302 131514387 -150679277 + MIR3 SINE MIR 67 157 -51 1945 200 27 11 chr1 131514593 131514817 -150678847 + L1MB5 LINE L1 5696 5915 -259 1699 138 96 80 chr1 131514817 131515267 -150678397 - MSTB2 LTR MaLR 0 457 1 1945 200 27 11 chr1 131515267 131515482 -150678182 + L1MB5 LINE L1 5915 6142 -32 261 235 29 15 chr1 131515507 131515575 -150678089 + MIR3 SINE MIR 140 208 0 187 250 23 57 chr1 131515659 131515747 -150677917 - L2 LINE L2 -214 3058 2974 1179 235 32 8 chr1 131516014 131516265 -150677399 + MIR SINE MIR 6 262 0 387 261 37 67 chr1 131516942 131517076 -150676588 - L2 LINE L2 -6 3266 3137 465 320 135 8 chr1 131517088 131517711 -150675953 + L2 LINE L2 2316 3084 -188 5605 118 28 13 chr1 131517733 131518661 -150675003 - Tigger4(Zombi) DNA MER2_type -327 2404 1463 915 186 12 0 chr1 131518652 131518819 -150674845 - Tigger4(Zombi) DNA MER2_type -2562 169 1 * 251 237 0 26 chr1 131518819 131518847 -150674817 + MER46A DNA MER2_type 145 170 -66 730 195 108 80 chr1 131518859 131519216 -150674448 - MSTC LTR MaLR -3 425 3 217 375 31 10 chr1 131519281 131519377 -150674287 - MIR SINE MIR -150 112 15 279 0 0 0 chr1 131519717 131519748 -150673916 + (GA)n Simple_repeat Simple_repeat 2 32 0 259 238 16 16 chr1 131520249 131520384 -150673280 + GA-rich Low_complexity Low_complexity 1 135 0 279 0 0 0 chr1 131521352 131521383 -150672281 + (TG)n Simple_repeat Simple_repeat 1 31 0 1765 155 0 24 chr1 131521385 131521675 -150671989 - AluJb SINE Alu -26 286 4 450 138 0 12 chr1 131522489 131522569 -150671095 - LTR2B LTR ERV1 0 490 412 420 240 10 19 chr1 131524252 131524356 -150669308 + MIR SINE MIR 8 110 -152 10260 41 4 0 chr1 131524581 131526604 -150667060 - L1PA4 LINE L1 -1 6154 4127 4559 59 2 0 chr1 131526604 131527656 -150666008 + L1PA6 LINE L1 4818 5871 -283 432 185 133 81 chr1 131528013 131528186 -150665478 - MER5A DNA MER1_type -3 186 5 201 39 0 0 chr1 131529405 131529431 -150664233 + (TG)n Simple_repeat Simple_repeat 1 26 0 337 298 83 57 chr1 131529738 131530126 -150663538 - MLT1J LTR MaLR -43 468 29 622 301 42 19 chr1 131530194 131530453 -150663211 + L1ME LINE L1 5406 5670 -451 248 146 21 0 chr1 131531088 131531136 -150662528 - MLT1K LTR MaLR -2 586 538 756 179 30 98 chr1 131531445 131531680 -150661984 + MER90 LTR ERV1 72 290 -324 1640 172 57 3 chr1 131531693 131532025 -150661639 + MLT1A2 LTR MaLR 14 363 -11 1099 235 111 0 chr1 131532032 131532330 -150661334 + MER90 LTR ERV1 284 614 0 3544 211 105 32 chr1 131532362 131533461 -150660203 + L1MC4a LINE L1 6627 7805 -3 823 136 8 0 chr1 131533480 131533605 -150660059 + FLAM_A SINE Alu 2 127 -6 310 255 0 10 chr1 131535299 131535401 -150658263 - L1MA10 LINE L1 -2 6332 6232 274 225 43 58 chr1 131535446 131535584 -150658080 - L1MA10 LINE L1 -98 6236 6101 9411 214 55 17 chr1 131535847 131537957 -150655707 - L1M3 LINE L1 -512 7075 4815 1914 141 7 4 chr1 131537957 131538268 -150655396 - AluSg SINE Alu 0 316 5 9411 214 55 17 chr1 131538268 131539104 -150654560 - L1M3 LINE L1 -2772 4815 4012 2795 171 25 42 chr1 131539132 131539614 -150654050 - L1MA7 LINE L1 0 6291 5823 1375 199 52 3 chr1 131539614 131539901 -150653763 - AluJo SINE Alu -11 301 1 2795 171 25 42 chr1 131539901 131540106 -150653558 - L1MA7 LINE L1 -468 5823 5616 304 187 35 46 chr1 131540206 131540329 -150653335 - L1MA7 LINE L1 -591 5565 5451 1437 201 0 13 chr1 131540391 131540705 -150652959 - LTR1B LTR ERV1 -516 310 1 8298 157 25 6 chr1 131540705 131542847 -150650817 - L1MA2 LINE L1 -447 5857 3672 599 168 9 0 chr1 131544423 131544530 -150649134 - L1MA2 LINE L1 -2411 3735 3628 20753 159 28 15 chr1 131544606 131548407 -150645257 - L1M3 LINE L1 -3692 3873 22 1756 183 3 3 chr1 131548469 131548754 -150644910 - AluJb SINE Alu -23 289 5 461 201 19 94 chr1 131548778 131548937 -150644727 - L1MB7 LINE L1 -172 6012 5866 402 264 7 14 chr1 131548946 131549094 -150644570 + L1M4 LINE L1 4143 4289 -1857 322 195 58 0 chr1 131549099 131549186 -150644478 - L1MB7 LINE L1 -344 5822 5731 1011 76 6 51 chr1 131549189 131549346 -150644318 - L1PA10 LINE L1 -1 6167 6018 2064 112 26 10 chr1 131549370 131549675 -150643989 + AluSq SINE Alu 3 312 -1 240 35 0 0 chr1 131549728 131549757 -150643907 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 365 271 49 28 chr1 131549986 131550130 -150643534 - MIR SINE MIR -11 251 105 6755 244 58 33 chr1 131550291 131550380 -150643284 - L1ME2 LINE L1 -339 5894 5809 1018 70 6 51 chr1 131550380 131550536 -150643128 - L1PA10 LINE L1 -2 6166 6018 6755 244 58 33 chr1 131550536 131550560 -150643104 - L1ME2 LINE L1 -424 5809 5787 1930 153 0 3 chr1 131550560 131550854 -150642810 + AluSx SINE Alu 3 295 -17 6755 244 58 33 chr1 131550854 131551239 -150642425 - L1ME2 LINE L1 -446 5787 5413 2042 133 3 3 chr1 131551239 131551532 -150642132 - AluSg SINE Alu -17 293 1 6755 244 58 33 chr1 131551532 131551597 -150642067 - L1ME2 LINE L1 -820 5413 5351 3176 167 60 14 chr1 131551597 131552245 -150641419 - L1MA4 LINE L1 -1 6299 5622 6755 244 58 33 chr1 131552245 131554634 -150639030 - L1ME2 LINE L1 -882 5351 2850 1947 264 70 56 chr1 131554669 131556037 -150637627 - L1ME2 LINE L1 -4895 1501 41 331 255 64 28 chr1 131556045 131556186 -150637478 + L1ME LINE L1 4513 4658 -1488 530 284 126 22 chr1 131556202 131556424 -150637240 + L2 LINE L2 3064 3308 -5 501 302 95 37 chr1 131556432 131557358 -150636306 + L1ME LINE L1 4678 5631 -531 735 227 36 5 chr1 131557490 131557684 -150635980 + MER105 DNA DNA 5 204 0 700 344 51 28 chr1 131558876 131559385 -150634279 - LTR33 LTR ERVL 0 521 1 243 360 10 3 chr1 131559417 131559620 -150634044 + L2 LINE L2 531 787 -2527 16061 151 29 64 chr1 131559754 131566801 -150626863 - L1PB1 LINE L1 -5 6862 8 180 0 0 0 chr1 131566803 131566823 -150626841 + (TTA)n Simple_repeat Simple_repeat 2 21 0 230 389 97 31 chr1 131567028 131567573 -150626091 + L2 LINE L2 1700 2280 -1034 353 258 200 26 chr1 131567585 131567740 -150625924 - MIR SINE MIR -5 257 76 43439 46 1 3 chr1 131567771 131573933 -150619731 + L1PA4 LINE L1 2 6154 -1 479 252 0 0 chr1 131574158 131574261 -150619403 - MIR SINE MIR -152 110 8 187 381 36 0 chr1 131574265 131574349 -150619315 + L2 LINE L2 2305 2391 -923 22 35 0 0 chr1 131576035 131576064 -150617600 + AT_rich Low_complexity Low_complexity 1 29 0 226 278 130 17 chr1 131576977 131577082 -150616582 - MLT1L LTR MaLR -77 538 421 230 243 27 14 chr1 131577082 131577156 -150616508 - MLT1I LTR MaLR 0 409 335 349 210 57 108 chr1 131577213 131577370 -150616294 - MLT1J2 LTR MaLR -213 237 89 238 229 0 0 chr1 131577700 131577748 -150615916 + LTR30 LTR ERV1 5 52 -670 370 67 0 0 chr1 131577748 131577793 -150615871 + LTR12 LTR ERV1 53 97 -617 1930 100 213 146 chr1 131577793 131578285 -150615379 + LTR12 LTR ERV1 57 581 -133 236 178 0 22 chr1 131578856 131578901 -150614763 - Charlie4 DNA MER1_type -1917 44 1 223 191 0 0 chr1 131578943 131578985 -150614679 - L3 LINE CR1 -306 1271 1230 941 243 38 13 chr1 131578991 131579230 -150614434 - MIR SINE MIR -10 252 8 256 261 174 0 chr1 131579265 131579357 -150614307 - L3 LINE CR1 -382 1195 1088 595 235 160 21 chr1 131582855 131583042 -150610622 + MIR SINE MIR 43 255 -7 7276 43 0 0 chr1 131583178 131584505 -150609159 - L1PA4 LINE L1 -4 6151 4818 5715 32 6 0 chr1 131584505 131585190 -150608474 + L1PA4 LINE L1 4127 4815 -1331 189 307 73 99 chr1 131585191 131585383 -150608281 - L2 LINE L2 -532 2782 2596 979 179 161 0 chr1 131585585 131585803 -150607861 + Tigger2 DNA MER2_type 2456 2708 -10 334 267 49 84 chr1 131585893 131586118 -150607546 - L1MEc LINE L1 -2857 3358 3142 2343 97 54 20 chr1 131586231 131586583 -150607081 + THE1B LTR MaLR 1 364 0 396 232 32 45 chr1 131586639 131586859 -150606805 - L1MEc LINE L1 -3728 2487 2271 317 304 103 16 chr1 131587326 131587645 -150606019 - L1MEc LINE L1 -4647 1749 1403 500 283 76 20 chr1 131587736 131588063 -150605601 - L1 LINE L1 -1612 4534 4169 1410 112 60 9 chr1 131588151 131588366 -150605298 + MER30 DNA MER1_type 5 230 0 236 302 95 34 chr1 131589049 131589232 -150604432 + L2 LINE L2 2904 3098 -215 499 330 16 22 chr1 131589286 131589468 -150604196 - MER5A DNA MER1_type -1 188 8 310 311 56 0 chr1 131589472 131589562 -150604102 + L2 LINE L2 3203 3297 -16 371 370 26 11 chr1 131591425 131591695 -150601969 + L1MEc LINE L1 424 697 -6024 741 264 103 55 chr1 131591708 131593182 -150600482 + L1MEc LINE L1 1307 2721 -3890 1590 273 56 19 chr1 131593204 131593736 -150599928 + L1MCb LINE L1 1 552 -5493 2041 193 78 52 chr1 131593853 131593904 -150599760 + L1MCb LINE L1 572 620 -5425 651 216 0 15 chr1 131593904 131594038 -150599626 + FLAM_A SINE Alu 1 132 -1 2041 193 78 52 chr1 131594038 131594561 -150599103 + L1MCb LINE L1 620 1161 -4884 1666 272 27 14 chr1 131594562 131595146 -150598518 + L1MCb LINE L1 2691 3282 -3282 * 8227 181 20 4 chr1 131595127 131597695 -150595969 + L1PA16 LINE L1 3550 6157 -9 839 228 54 82 chr1 131597701 131598237 -150595427 + L1MCb LINE L1 3273 3793 -2771 24 0 0 0 chr1 131598257 131598281 -150595383 + AT_rich Low_complexity Low_complexity 1 24 0 915 252 38 8 chr1 131598733 131598971 -150594693 + MIR SINE MIR 8 252 -10 227 191 0 0 chr1 131598977 131599019 -150594645 + L3 LINE CR1 1230 1271 -306 233 178 0 22 chr1 131599061 131599106 -150594558 + Charlie4 DNA MER1_type 1 44 -1917 1900 100 213 146 chr1 131599677 131600169 -150593495 - LTR12 LTR ERV1 -133 581 57 369 67 0 0 chr1 131600169 131600214 -150593450 - LTR12 LTR ERV1 -617 97 53 234 229 0 0 chr1 131600214 131600262 -150593402 - LTR30 LTR ERV1 -670 52 5 334 205 64 109 chr1 131600588 131600744 -150592920 + MLT1J2 LTR MaLR 89 237 -213 235 243 27 14 chr1 131600801 131600875 -150592789 + MLT1I LTR MaLR 335 409 0 231 278 130 17 chr1 131600875 131600980 -150592684 + MLT1L LTR MaLR 421 538 -77 22 35 0 0 chr1 131601894 131601923 -150591741 + AT_rich Low_complexity Low_complexity 1 29 0 186 381 36 0 chr1 131603607 131603691 -150589973 - L2 LINE L2 -923 2391 2305 475 252 0 0 chr1 131603695 131603798 -150589866 + MIR SINE MIR 8 110 -152 8597 51 5 3 chr1 131604023 131605893 -150587771 - L1PA4 LINE L1 -1 6154 4281 3798 41 4 0 chr1 131605893 131606359 -150587305 + L1PA4 LINE L1 3816 4283 -1863 961 267 199 44 chr1 131606360 131607052 -150586612 + L2 LINE L2 2496 3297 -16 278 345 103 21 chr1 131607341 131607486 -150586178 + L2 LINE L2 3116 3272 0 484 318 139 3 chr1 131607497 131607716 -150585948 + MIR SINE MIR 3 250 -12 441 0 0 0 chr1 131607763 131607812 -150585852 + (TG)n Simple_repeat Simple_repeat 2 50 0 244 232 8 176 chr1 131608011 131608136 -150585528 + L2 LINE L2 3191 3294 -19 391 276 29 18 chr1 131608408 131608578 -150585086 + L1MC2 LINE L1 4455 4626 -1520 308 276 45 60 chr1 131608858 131608992 -150584672 + L1MC2 LINE L1 4919 5050 -1096 2475 145 58 8 chr1 131609035 131609533 -150584131 + L1MA4A LINE L1 5781 6303 0 521 306 123 29 chr1 131609637 131610130 -150583534 + L1MC2 LINE L1 5284 5823 -298 23 97 0 0 chr1 131610187 131610259 -150583405 + AT_rich Low_complexity Low_complexity 1 72 0 210 224 0 0 chr1 131610344 131610393 -150583271 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 471 318 42 5 chr1 131610518 131610710 -150582954 - LTR33 LTR ERVL -322 199 1 392 265 55 45 chr1 131610815 131611106 -150582558 - L1M4 LINE L1 -2189 3957 3664 22 35 0 0 chr1 131611399 131611428 -150582236 + AT_rich Low_complexity Low_complexity 1 29 0 490 260 87 50 chr1 131611483 131611922 -150581742 - L1M4 LINE L1 -2908 3238 2784 23 0 0 0 chr1 131612103 131612126 -150581538 + AT_rich Low_complexity Low_complexity 1 23 0 30 75 0 0 chr1 131612596 131612649 -150581015 + AT_rich Low_complexity Low_complexity 1 53 0 1575 183 52 69 chr1 131612766 131613277 -150580387 + L1MDa LINE L1 1260 1908 -4518 * 2209 169 3 10 chr1 131613276 131613667 -150579997 + L1MC2 LINE L1 5920 6307 -37 1872 110 0 83 chr1 131613667 131613994 -150579670 - AluSx SINE Alu -11 301 2 1520 167 25 50 chr1 131614019 131614337 -150579327 + AluJo SINE Alu 1 310 -2 4113 150 28 3 chr1 131615131 131615809 -150577855 - MER50 LTR ERV1 -33 701 7 187 347 207 10 chr1 131616000 131616193 -150577471 - L2 LINE L2 -235 3037 2807 223 258 0 0 chr1 131616335 131616385 -150577279 - MER5B DNA MER1_type -53 136 76 1948 130 143 11 chr1 131616419 131616797 -150576867 - L1MA9 LINE L1 -31 6281 5854 292 294 18 64 chr1 131617308 131617417 -150576247 + MER5A DNA MER1_type 20 123 -66 218 157 0 20 chr1 131617424 131617475 -150576189 + (CA)n Simple_repeat Simple_repeat 2 51 0 3124 146 27 41 chr1 131618507 131619137 -150574527 - L1MA4 LINE L1 -5 6295 5675 307 195 39 0 chr1 131619175 131619252 -150574412 - L1MB3 LINE L1 -8 6175 6096 3924 163 19 10 chr1 131619262 131619641 -150574023 - L1MA4 LINE L1 -278 6022 5631 234 0 0 0 chr1 131619641 131619667 -150573997 + (CA)n Simple_repeat Simple_repeat 2 27 0 3924 163 19 10 chr1 131619667 131620018 -150573646 - L1MA4 LINE L1 -669 5631 5285 833 178 6 19 chr1 131620026 131620183 -150573481 + Tigger2 DNA MER2_type 2 156 -2562 14230 44 2 2 chr1 131620184 131621956 -150571708 + L1P LINE L1 3043 4815 -1331 187 307 73 99 chr1 131621957 131622149 -150571515 - L2 LINE L2 -532 2782 2596 946 191 159 0 chr1 131622349 131622569 -150571095 + Tigger2 DNA MER2_type 2454 2708 -10 338 267 49 84 chr1 131622661 131622886 -150570778 - L1MEc LINE L1 -2857 3358 3142 2310 99 54 20 chr1 131622999 131623351 -150570313 + THE1B LTR MaLR 1 364 0 402 241 32 45 chr1 131623407 131623627 -150570037 - L1MEc LINE L1 -3728 2487 2271 350 323 92 12 chr1 131624094 131624497 -150569167 - L1MEc LINE L1 -4647 1749 1315 517 280 76 20 chr1 131624504 131624818 -150568846 - L1 LINE L1 -1612 4534 4182 1403 112 60 9 chr1 131624920 131625135 -150568529 + MER30 DNA MER1_type 5 230 0 236 322 41 15 chr1 131625818 131625930 -150567734 + L2 LINE L2 2905 3017 -255 507 330 16 22 chr1 131626055 131626237 -150567427 - MER5A DNA MER1_type -1 188 8 308 311 56 0 chr1 131626241 131626331 -150567333 + L2 LINE L2 3203 3297 -16 369 370 26 11 chr1 131628195 131628465 -150565199 + L1MEc LINE L1 424 697 -6024 772 268 102 54 chr1 131628478 131629952 -150563712 + L1MEc LINE L1 1307 2721 -3890 1590 273 56 19 chr1 131629974 131630506 -150563158 + L1MCb LINE L1 1 552 -5493 1986 192 84 52 chr1 131630624 131630675 -150562989 + L1MCb LINE L1 572 620 -5425 651 216 0 15 chr1 131630675 131630809 -150562855 + FLAM_A SINE Alu 1 132 -1 1986 192 84 52 chr1 131630809 131631329 -150562335 + L1MCb LINE L1 620 1161 -4884 1597 274 33 14 chr1 131631330 131631911 -150561753 + L1MCb LINE L1 2691 3282 -3282 * 8181 183 21 4 chr1 131631892 131634459 -150559205 + L1PA16 LINE L1 3550 6157 -9 1538 240 71 85 chr1 131634465 131635302 -150558362 + L1MCb LINE L1 3273 4120 -2444 2296 61 6 61 chr1 131635302 131635630 -150558034 + AluY SINE Alu 1 310 -1 1538 240 71 85 chr1 131635630 131635646 -150558018 + L1MCb LINE L1 4120 4135 -2429 1617 168 29 7 chr1 131635646 131635920 -150557744 + AluJo SINE Alu 10 289 -23 1538 240 71 85 chr1 131635920 131636152 -150557512 + L1MCb LINE L1 4135 4344 -2220 1432 264 98 27 chr1 131636150 131636729 -150556935 + L1MCb LINE L1 4706 5333 -1231 * 1766 128 3 59 chr1 131636729 131637050 -150556614 + AluSx SINE Alu 1 303 -9 1432 264 98 27 chr1 131637050 131637091 -150556573 + L1MCb LINE L1 5333 5370 -1194 415 200 216 0 chr1 131637155 131637280 -150556384 + MER5C DNA MER1_type 173 324 0 624 283 62 40 chr1 131637464 131637736 -150555928 - L2 LINE L2 -1 3312 3035 249 376 118 21 chr1 131637780 131638118 -150555546 + L2 LINE L2 2034 2404 -910 245 417 18 6 chr1 131638179 131638347 -150555317 - L2 LINE L2 -665 2649 2480 1013 340 40 21 chr1 131638499 131638978 -150554686 - LTR16C LTR ERVL -3 488 1 220 246 43 134 chr1 131638983 131639260 -150554404 - L2 LINE L2 -1029 2285 2034 189 0 0 0 chr1 131639912 131639933 -150553731 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1964 167 98 23 chr1 131642551 131642947 -150550717 - MSTB LTR MaLR 0 426 1 204 361 8 15 chr1 131642950 131643080 -150550584 - L2 LINE L2 -474 2840 2712 953 279 87 7 chr1 131644941 131645239 -150548425 + L2 LINE L2 2175 2496 -818 7987 108 0 27 chr1 131645240 131647145 -150546519 - L1PA5 LINE L1 0 6154 4281 3829 33 4 0 chr1 131647145 131647603 -150546061 + L1PA5 LINE L1 3816 4275 -1871 965 267 196 43 chr1 131647604 131648304 -150545360 + L2 LINE L2 2488 3297 -16 273 345 103 21 chr1 131648593 131648738 -150544926 + L2 LINE L2 3116 3272 0 474 318 139 3 chr1 131648749 131648968 -150544696 + MIR SINE MIR 3 250 -12 495 0 0 0 chr1 131649013 131649068 -150544596 + (TG)n Simple_repeat Simple_repeat 2 56 0 234 213 0 170 chr1 131649272 131649366 -150544298 + L2 LINE L2 3191 3268 -45 373 276 29 18 chr1 131649668 131649838 -150543826 + L1MC2 LINE L1 4455 4626 -1520 307 276 45 60 chr1 131650119 131650253 -150543411 + L1MC2 LINE L1 4919 5050 -1096 2465 145 58 8 chr1 131650296 131650794 -150542870 + L1MA4A LINE L1 5781 6303 0 478 306 123 29 chr1 131650898 131651391 -150542273 + L1MC2 LINE L1 5284 5823 -298 23 97 0 0 chr1 131651448 131651520 -150542144 + AT_rich Low_complexity Low_complexity 1 72 0 210 224 0 0 chr1 131651605 131651654 -150542010 + (TA)n Simple_repeat Simple_repeat 2 50 0 460 318 42 5 chr1 131651779 131651971 -150541693 - LTR33 LTR ERVL -322 199 1 354 265 55 45 chr1 131652076 131652367 -150541297 - L1M4 LINE L1 -2189 3957 3664 22 35 0 0 chr1 131652660 131652689 -150540975 + AT_rich Low_complexity Low_complexity 1 29 0 435 265 87 48 chr1 131652744 131653182 -150540482 - L1M4 LINE L1 -2908 3238 2784 23 0 0 0 chr1 131653363 131653386 -150540278 + AT_rich Low_complexity Low_complexity 1 23 0 330 333 47 23 chr1 131653388 131653559 -150540105 - L1M4 LINE L1 -3642 2504 2330 35 41 0 0 chr1 131653856 131653905 -150539759 + AT_rich Low_complexity Low_complexity 1 49 0 1550 183 52 69 chr1 131654022 131654533 -150539131 + L1MDa LINE L1 1260 1908 -4518 * 2185 169 3 10 chr1 131654532 131654923 -150538741 + L1MC2 LINE L1 5920 6307 -37 1904 110 0 83 chr1 131654923 131655250 -150538414 - AluSx SINE Alu -11 301 2 1546 167 25 47 chr1 131655275 131655592 -150538072 + AluJo SINE Alu 1 310 -2 4121 152 31 3 chr1 131656387 131657063 -150536601 - MER50 LTR ERV1 -33 701 7 187 347 207 10 chr1 131657251 131657444 -150536220 - L2 LINE L2 -235 3037 2807 224 258 0 0 chr1 131657586 131657636 -150536028 - MER5B DNA MER1_type -53 136 76 1944 127 143 11 chr1 131657670 131658048 -150535616 - L1MA9 LINE L1 -31 6281 5854 347 328 0 17 chr1 131658558 131658674 -150534990 + MER5B DNA MER1_type 3 116 -62 185 176 0 20 chr1 131658677 131658728 -150534936 + (CA)n Simple_repeat Simple_repeat 2 51 0 3161 148 25 40 chr1 131659764 131660394 -150533270 - L1MA4 LINE L1 -5 6295 5675 300 195 39 0 chr1 131660430 131660507 -150533157 - L1MB3 LINE L1 -8 6175 6096 3833 166 31 9 chr1 131660517 131660896 -150532768 - L1MA4 LINE L1 -278 6022 5653 306 0 0 0 chr1 131660896 131660930 -150532734 + (CA)n Simple_repeat Simple_repeat 2 35 0 3833 166 31 9 chr1 131660930 131661289 -150532375 - L1MA4 LINE L1 -647 5653 5268 15420 156 26 16 chr1 131661289 131661444 -150532220 + Tigger2 DNA MER2_type 2 154 -2564 18435 51 9 2 chr1 131661444 131664555 -150529109 + L1PA5 LINE L1 3039 6153 -1 15420 156 26 16 chr1 131664555 131667086 -150526578 + Tigger2 DNA MER2_type 154 2714 -4 12672 184 44 31 chr1 131667088 131668623 -150525041 - L1MA4 LINE L1 -874 5272 3678 2170 129 0 3 chr1 131668623 131668933 -150524731 - AluSg SINE Alu -1 309 1 12672 184 44 31 chr1 131668933 131670360 -150523304 - L1MA4 LINE L1 -2468 3678 2271 1433 169 4 22 chr1 131670567 131670839 -150522825 - L1PA16 LINE L1 -18 6148 5882 380 322 100 15 chr1 131670964 131671225 -150522439 - L2 LINE L2 -1240 2074 1792 15686 36 7 1 chr1 131671250 131673935 -150519729 - L1PA3 LINE L1 -3 6152 3457 707 151 108 0 chr1 131673953 131674092 -150519572 - L1P LINE L1 -2601 3545 3392 * 9892 30 2 1 chr1 131674085 131675305 -150518359 + L1P LINE L1 2169 3389 -2757 719 63 14 0 chr1 131675304 131675411 -150518253 - L1ME LINE L1 -545 5576 5468 * 4917 39 5 5 chr1 131675411 131676016 -150517648 + L1PA5 LINE L1 5545 6154 0 349 372 47 0 chr1 131677082 131677230 -150516434 - L2 LINE L2 -1 3271 3117 257 274 0 14 chr1 131677441 131677514 -150516150 - MLT1I LTR MaLR 0 409 338 592 301 38 19 chr1 131677641 131677850 -150515814 - MLT1J2 LTR MaLR -237 213 1 291 299 84 115 chr1 131678935 131679511 -150514153 - L2 LINE L2 0 3272 2717 21 0 0 0 chr1 131679800 131679821 -150513843 + AT_rich Low_complexity Low_complexity 1 21 0 231 114 0 0 chr1 131680941 131680976 -150512688 + (TA)n Simple_repeat Simple_repeat 1 35 0 241 277 0 43 chr1 131681006 131681100 -150512564 - L1MC4 LINE L1 -1339 6703 6614 261 211 0 0 chr1 131681106 131681163 -150512501 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 1488 169 13 3 chr1 131681266 131681568 -150512096 - L1 LINE L1 -1600 4546 4242 * 5755 164 30 10 chr1 131681551 131683224 -150510440 + L1MA4 LINE L1 4581 6294 -6 201 303 92 55 chr1 131683490 131683599 -150510065 + L2 LINE L2 3196 3308 -5 214 276 20 71 chr1 131684357 131684455 -150509209 - L2 LINE L2 -508 2806 2714 21 36 0 0 chr1 131685391 131685419 -150508245 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr1 131685633 131685658 -150508006 + (TA)n Simple_repeat Simple_repeat 1 25 0 1104 212 0 5 chr1 131685783 131685986 -150507678 + MER46A DNA MER2_type 35 236 0 222 37 0 0 chr1 131686012 131686039 -150507625 + (CA)n Simple_repeat Simple_repeat 1 27 0 432 0 0 0 chr1 131686733 131686781 -150506883 + (TG)n Simple_repeat Simple_repeat 2 49 0 1595 176 46 0 chr1 131686781 131687042 -150506622 - AluSx SINE Alu -33 279 7 674 304 21 31 chr1 131687065 131687354 -150506310 + L1M3 LINE L1 1 286 -5855 482 255 38 28 chr1 131687681 131687874 -150505790 + L1M3 LINE L1 943 1134 -4997 9273 32 2 2 chr1 131687874 131689749 -150503915 + L1PA4 LINE L1 4273 6147 -8 482 255 38 28 chr1 131689749 131689768 -150503896 + L1M3 LINE L1 1134 1151 -4980 * 4930 194 52 54 chr1 131689765 131690539 -150503125 + L1M3 LINE L1 2863 3637 -2573 2396 83 0 0 chr1 131690539 131690841 -150502823 + AluY SINE Alu 1 302 -9 4930 194 52 54 chr1 131690841 131691331 -150502333 + L1M3 LINE L1 3637 4126 -2084 2428 107 8 6 chr1 131691331 131691685 -150501979 - THE1A LTR MaLR 0 355 1 4930 194 52 54 chr1 131691685 131691910 -150501754 + L1M3 LINE L1 4126 4350 -1860 4246 109 2 2 chr1 131691906 131692519 -150501145 - L1PA8 LINE L1 -1873 4273 3661 * 7617 85 3 3 chr1 131692523 131694408 -150499256 + L1PA8 LINE L1 4287 6170 -2 4960 190 22 25 chr1 131694414 131695772 -150497892 + L1M3 LINE L1 4337 5690 -542 26 0 0 0 chr1 131695982 131696008 -150497656 + AT_rich Low_complexity Low_complexity 1 26 0 823 167 14 60 chr1 131696017 131696233 -150497431 + L1MA10 LINE L1 6127 6332 -2 1613 123 97 4 chr1 131696352 131696620 -150497044 + AluSx SINE Alu 1 293 -19 1885 134 9 48 chr1 131696740 131696801 -150496863 + L1PB4 LINE L1 5467 5529 -774 2068 121 0 16 chr1 131696801 131697107 -150496557 - AluSg SINE Alu -9 301 1 1885 134 9 48 chr1 131697107 131697381 -150496283 + L1PB4 LINE L1 5529 5789 -514 40 49 0 0 chr1 131697448 131697509 -150496155 + AT_rich Low_complexity Low_complexity 1 61 0 431 148 40 51 chr1 131697509 131697685 -150495979 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 1348 233 16 27 chr1 131697692 131698057 -150495607 + L1PB4 LINE L1 5794 6154 -2 208 317 0 0 chr1 131698088 131698148 -150495516 + L2 LINE L2 3254 3313 0 637 287 118 37 chr1 131699240 131699620 -150494044 + L1MEd LINE L1 6 416 -5703 350 319 68 14 chr1 131699746 131700228 -150493436 + L1MEd LINE L1 2104 2611 -3518 327 286 92 53 chr1 131700273 131700797 -150492867 + L1MEd LINE L1 2883 3426 -2703 254 349 0 0 chr1 131700949 131701035 -150492629 + MLT1I LTR MaLR 85 170 -239 4460 18 2 0 chr1 131701206 131701822 -150491842 - L1PA3 LINE L1 -379 5776 5160 3216 34 0 0 chr1 131701822 131702203 -150491461 + L1PA3 LINE L1 5775 6155 0 218 282 122 23 chr1 131704680 131704811 -150488853 - L2 LINE L2 -500 2814 2671 267 276 267 0 chr1 131704864 131704980 -150488684 + L2 LINE L2 3121 3267 -5 31 92 0 0 chr1 131705031 131705118 -150488546 + AT_rich Low_complexity Low_complexity 1 87 0 626 270 35 10 chr1 131705731 131705940 -150487724 + L1M2 LINE L1 5493 5709 -582 282 319 97 9 chr1 131706243 131706459 -150487205 - L1MC4a LINE L1 -1888 5920 5686 485 221 159 0 chr1 131706728 131706873 -150486791 + MIR SINE MIR 94 261 -1 396 0 0 0 chr1 131706986 131707030 -150486634 + (TA)n Simple_repeat Simple_repeat 1 44 0 461 327 85 42 chr1 131707115 131707525 -150486139 - L1M4c LINE L1 -3600 2782 2355 3837 188 151 66 chr1 131708063 131709095 -150484569 + Charlie1a DNA MER1_type 1 1175 -1586 4401 144 57 5 chr1 131709095 131709919 -150483745 + L1MA4 LINE L1 5429 6295 -5 3837 188 151 66 chr1 131709919 131710227 -150483437 + Charlie1a DNA MER1_type 1175 1455 0 236 238 32 16 chr1 131710874 131710937 -150482727 - MIR3 SINE MIR -36 172 109 573 290 75 14 chr1 131711095 131711374 -150482290 + LTR16A1 LTR ERVL 160 455 -2 4656 194 31 35 chr1 131712335 131712468 -150481196 + L1M2 LINE L1 2145 2277 -4571 2105 119 0 3 chr1 131712468 131712763 -150480901 + AluY SINE Alu 1 294 -17 4656 194 31 35 chr1 131712763 131714474 -150479190 + L1M2 LINE L1 2277 3983 -2865 542 248 87 31 chr1 131714784 131714945 -150478719 - MIR SINE MIR 0 262 93 2316 90 0 10 chr1 131715289 131715589 -150478075 + AluSg SINE Alu 3 299 -11 1211 182 4 26 chr1 131717679 131717910 -150475754 - AluJb SINE Alu -6 306 81 957 218 44 0 chr1 131718322 131718528 -150475136 + MER20 DNA MER1_type 1 215 -4 28 0 0 0 chr1 131718860 131718888 -150474776 + AT_rich Low_complexity Low_complexity 1 28 0 1564 184 14 0 chr1 131719682 131719976 -150473688 - L1PA16 LINE L1 -3 6163 5866 766 207 32 5 chr1 131721631 131721819 -150471845 + AluSg1 SINE Alu 1 193 -116 2118 105 3 16 chr1 131722355 131722668 -150470996 + AluSg1 SINE Alu 1 309 0 1631 281 99 6 chr1 131723340 131723867 -150469797 - L2 LINE L2 -619 2695 2120 1522 301 56 21 chr1 131724789 131725685 -150467979 + L1MA7 LINE L1 1596 2568 -4918 604 261 17 17 chr1 131725690 131725870 -150467794 - L1M4c LINE L1 -4529 1855 1676 1134 151 118 16 chr1 131725872 131726117 -150467547 - L1MB3 LINE L1 -2 6181 5912 483 235 10 0 chr1 131726125 131726223 -150467441 - Tigger5 DNA MER2_type -1 2322 2224 234 256 141 38 chr1 131726231 131726649 -150467015 + L1MA7 LINE L1 3071 3531 -4034 1226 222 5 84 chr1 131726724 131726800 -150466864 + L1MA7 LINE L1 3539 3619 -3946 1715 154 8 0 chr1 131726800 131727060 -150466604 + AluSx SINE Alu 6 267 -45 1226 222 5 84 chr1 131727060 131727398 -150466266 + L1MA7 LINE L1 3619 3920 -3645 726 201 13 0 chr1 131727380 131727534 -150466130 + L1MA7 LINE L1 6541 6696 -869 * 2010 125 0 0 chr1 131727553 131727840 -150465824 + L1P3 LINE L1 6 292 -6169 6770 70 8 2 chr1 131727887 131728814 -150464850 + L1PA7 LINE L1 5223 6154 0 4299 164 64 48 chr1 131728815 131729626 -150464038 + L1MA7 LINE L1 6698 7530 -180 2061 117 0 0 chr1 131729626 131729946 -150463718 + AluSg SINE Alu 1 320 0 4299 164 64 48 chr1 131729946 131730121 -150463543 + L1MA7 LINE L1 7530 7701 -9 4626 184 41 15 chr1 131730144 131732004 -150461660 + L1MB1 LINE L1 4266 6165 -3 2274 84 0 11 chr1 131732056 131732372 -150461292 - AluSg SINE Alu 0 313 1 193 362 7 71 chr1 131732783 131732924 -150460740 + L2 LINE L2 3180 3311 -2 545 265 145 13 chr1 131735347 131735581 -150458083 + HAL1 LINE L1 1326 1590 -917 523 290 97 80 chr1 131735610 131736205 -150457459 + HAL1 LINE L1 962 1584 -923 1258 139 16 37 chr1 131736205 131736450 -150457214 + L1PA16 LINE L1 5922 6161 -5 523 290 97 80 chr1 131736450 131736915 -150456749 + HAL1 LINE L1 1584 2040 -467 1924 231 72 15 chr1 131736923 131737448 -150456216 + L1MC3 LINE L1 6717 7271 -514 437 86 0 0 chr1 131737448 131737506 -150456158 + AluSq/x SINE Alu 75 132 -180 286 125 0 0 chr1 131737516 131737556 -150456108 - Alu SINE Alu -257 44 5 908 162 40 12 chr1 131737556 131737729 -150455935 - L1MC4a LINE L1 -400 7408 7231 25 51 0 0 chr1 131737821 131737860 -150455804 + AT_rich Low_complexity Low_complexity 1 39 0 9190 216 14 32 chr1 131737915 131739915 -150453749 + L1 LINE L1 2447 4402 -1744 219 36 0 0 chr1 131739915 131739943 -150453721 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 9190 216 14 32 chr1 131739943 131740283 -150453381 + L1 LINE L1 4402 4746 -1400 500 254 97 0 chr1 131740293 131740458 -150453206 + MIR SINE MIR 75 255 -7 367 92 0 15 chr1 131741120 131741185 -150452479 - L1PA2 LINE L1 0 6155 6092 1601 6 0 0 chr1 131741185 131741365 -150452299 + L1PA2 LINE L1 5774 5953 -202 * 3995 178 56 12 chr1 131741362 131742482 -150451182 - L1MB2 LINE L1 -35 6136 4980 247 245 0 0 chr1 131742506 131742555 -150451109 - L2 LINE L2 0 3313 3265 1143 259 25 31 chr1 131742953 131743277 -150450387 + MLT1H LTR MaLR 32 353 -196 890 138 66 63 chr1 131743278 131743500 -150450164 - MER20 DNA MER1_type -18 201 6 198 313 75 45 chr1 131744099 131744233 -150449431 + L2 LINE L2 2932 3069 -203 16634 101 4 6 chr1 131744260 131747601 -150446063 - L1PA8 LINE L1 0 6487 3217 5788 117 20 0 chr1 131747601 131748488 -150445176 - L1PA8 LINE L1 -5372 1089 185 280 333 28 14 chr1 131749717 131749861 -150443803 + L2 LINE L2 2717 2862 -452 500 256 38 34 chr1 131751392 131751587 -150442077 + MLT1J2 LTR MaLR 18 213 -237 347 372 47 0 chr1 131751998 131752146 -150441518 + L2 LINE L2 3117 3271 -1 4902 38 8 3 chr1 131753214 131753821 -150439843 - L1PA5 LINE L1 0 6154 5545 5723 38 0 1 chr1 131753821 131754504 -150439160 + L1PA5 LINE L1 5471 6154 0 937 278 88 7 chr1 131754505 131754800 -150438864 - L2 LINE L2 -818 2496 2178 526 310 106 16 chr1 131755112 131755367 -150438297 + L1ME3A LINE L1 5671 5948 -222 252 0 0 0 chr1 131756608 131756636 -150437028 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 387 0 0 0 chr1 131756635 131756678 -150436986 + (GA)n Simple_repeat Simple_repeat 2 44 0 207 286 105 43 chr1 131756742 131756892 -150436772 + MIR SINE MIR 34 195 -67 181 336 115 0 chr1 131757201 131757323 -150436341 - L2 LINE L2 -215 3057 2922 278 191 16 16 chr1 131758845 131758908 -150434756 + MLT1A1 LTR MaLR 303 365 0 298 239 52 52 chr1 131758990 131759124 -150434540 + MIR SINE MIR 88 221 -41 210 344 0 0 chr1 131759332 131759393 -150434271 + MIR SINE MIR 84 144 -118 7850 213 27 24 chr1 131759399 131761631 -150432033 + L1PA12 LINE L1 212 3274 -4310 2060 161 0 0 chr1 131761631 131761936 -150431728 - AluSc SINE Alu -4 305 1 7850 213 27 24 chr1 131761936 131763119 -150430545 + L1PA12 LINE L1 3274 4451 -3133 8654 224 53 17 chr1 131763255 131766190 -150427474 + L1M1 LINE L1 3052 6100 -1465 857 35 9 0 chr1 131766337 131766450 -150427214 - L1P LINE L1 -1906 4240 4127 7141 44 5 2 chr1 131766450 131767778 -150425886 + L1PA4 LINE L1 4818 6147 -8 1951 219 73 38 chr1 131767794 131768568 -150425096 + L1 LINE L1 2799 3609 -2537 2396 83 0 0 chr1 131768568 131768869 -150424795 + AluY SINE Alu 1 301 -10 1951 219 73 38 chr1 131768869 131768971 -150424693 + L1 LINE L1 3609 3706 -2440 4367 177 55 18 chr1 131769546 131770975 -150422689 - L1MA7 LINE L1 -2 6289 4805 699 53 0 21 chr1 131771114 131771209 -150422455 + L1PA3 LINE L1 6049 6141 -14 194 317 96 19 chr1 131771212 131771316 -150422348 + L2 LINE L2 2778 2889 -425 590 235 160 21 chr1 131771351 131771538 -150422126 - MIR SINE MIR -7 255 43 181 0 0 65 chr1 131772726 131772757 -150420907 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 524 289 118 37 chr1 131772770 131773150 -150420514 + L1MEd LINE L1 6 416 -5703 21 71 0 0 chr1 131773313 131773355 -150420309 + AT_rich Low_complexity Low_complexity 1 42 0 11665 45 1 10 chr1 131773519 131775068 -150418596 + L1P LINE L1 3258 4792 -1354 21 0 0 0 chr1 131775111 131775132 -150418532 + AT_rich Low_complexity Low_complexity 1 21 0 1418 153 268 6 chr1 131775653 131775992 -150417672 - MSTA LTR MaLR 0 428 1 21 57 0 0 chr1 131776264 131776299 -150417365 + AT_rich Low_complexity Low_complexity 1 35 0 275 209 55 33 chr1 131776313 131776404 -150417260 + MLT1A1 LTR MaLR 3 95 -270 962 244 18 14 chr1 131776415 131776698 -150416966 + MLT1A1 LTR MaLR 55 338 -27 1835 179 11 3 chr1 131776928 131777297 -150416367 - L1 LINE L1 -1194 4952 4581 1378 157 11 7 chr1 131777297 131777583 -150416081 + L1 LINE L1 4260 4546 -1600 293 164 14 0 chr1 131777710 131777783 -150415881 + (TG)n Simple_repeat Simple_repeat 1 74 0 247 229 17 25 chr1 131777784 131777902 -150415762 + (GGGTG)n Simple_repeat Simple_repeat 5 121 0 1388 189 64 20 chr1 131828238 131828534 -150365130 - AluJo SINE Alu -3 309 1 7879 194 27 36 chr1 131828536 131830374 -150363290 - L1 LINE L1 -1891 4255 2434 280 160 0 0 chr1 131830371 131830421 -150363243 + L1MA10 LINE L1 2452 2501 -3645 * 4723 176 37 39 chr1 131830450 131831718 -150361946 + L1MA10 LINE L1 5054 6327 -7 29 28 0 0 chr1 131832423 131832459 -150361205 + AT_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chr1 131832733 131832760 -150360904 + (CA)n Simple_repeat Simple_repeat 2 28 0 5414 161 11 28 chr1 131833133 131833649 -150360015 + L1PA16 LINE L1 4774 5297 -869 2205 111 35 9 chr1 131833649 131833993 -150359671 + THE1A LTR MaLR 3 355 0 5414 161 11 28 chr1 131833993 131834872 -150358792 + L1PA16 LINE L1 5297 6150 -16 517 206 119 24 chr1 131835294 131835420 -150358244 - MLT1J2 LTR MaLR 0 450 313 226 288 0 0 chr1 131835740 131835799 -150357865 + (AGATG)n Simple_repeat Simple_repeat 4 62 0 1100 223 70 0 chr1 131836612 131836913 -150356751 + MER33 DNA MER1_type 2 323 -1 221 188 0 21 chr1 131836972 131837020 -150356644 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3369 55 0 16 chr1 131838031 131838466 -150355198 - L1PA5 LINE L1 0 6154 5727 2493 65 0 10 chr1 131838645 131838951 -150354713 - AluY SINE Alu -8 303 1 1073 230 48 8 chr1 131840052 131840300 -150353364 - MLT1F1 LTR MaLR -2 565 308 324 219 84 126 chr1 131840523 131840642 -150353022 - MLT1E LTR MaLR -293 249 136 388 338 86 7 chr1 131840657 131840808 -150352856 - MLT1E LTR MaLR -430 163 1 1866 249 61 24 chr1 131841358 131841865 -150351799 - MLT1F LTR MaLR -16 526 1 1673 203 0 7 chr1 131842472 131842763 -150350901 + AluJb SINE Alu 1 289 -23 348 237 167 9 chr1 131843815 131843929 -150349735 + L2 LINE L2 3182 3313 0 2232 111 0 0 chr1 131844428 131844716 -150348948 + AluSq SINE Alu 1 288 -25 269 220 20 0 chr1 131844822 131844872 -150348792 - L2 LINE L2 -12 3260 3210 1567 189 7 21 chr1 131845321 131845606 -150348058 + AluJb SINE Alu 5 285 -27 40 0 0 0 chr1 131845606 131845646 -150348018 + AT_rich Low_complexity Low_complexity 1 40 0 4772 162 35 21 chr1 131849286 131850022 -150343642 + L1PA16 LINE L1 4576 5300 -866 2255 88 0 41 chr1 131850022 131850339 -150343325 + AluY SINE Alu 3 306 -5 4772 162 35 21 chr1 131850339 131851119 -150342545 + L1PA16 LINE L1 5300 6129 -37 28 48 0 0 chr1 131851170 131851212 -150342452 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr1 131852922 131852950 -150340714 + AT_rich Low_complexity Low_complexity 1 28 0 432 215 112 34 chr1 131852951 131853184 -150340480 - Charlie2 DNA MER1_type -224 2638 2388 2920 30 3 0 chr1 131853329 131853693 -150339971 - L1PA4 LINE L1 -99 6056 5692 379 316 73 56 chr1 131853909 131854472 -150339192 - L1MC4a LINE L1 -240 5922 5354 412 207 31 78 chr1 131855347 131855540 -150338124 - L1MEd LINE L1 -4929 1190 1007 242 221 44 71 chr1 131855773 131855886 -150337778 - HAL1 LINE L1 -850 1657 1548 578 349 40 48 chr1 131855887 131856260 -150337404 + L3 LINE CR1 1205 1574 -3 271 249 55 120 chr1 131856479 131856696 -150336968 - MLT1I LTR MaLR -137 272 70 412 244 36 107 chr1 131856737 131856779 -150336885 - MER63A DNA MER1_type -1478 210 167 1947 105 4 0 chr1 131856779 131857077 -150336587 - AluSg SINE Alu 0 321 23 412 244 36 107 chr1 131857077 131857258 -150336406 - MER63A DNA MER1_type -1521 167 2 216 67 0 0 chr1 131858442 131858472 -150335192 + (GA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr1 131858472 131858498 -150335166 + (TG)n Simple_repeat Simple_repeat 2 27 0 186 279 58 12 chr1 131859231 131859317 -150334347 - L2 LINE L2 -129 3184 3095 259 94 75 0 chr1 131859979 131860032 -150333632 - AluSg SINE Alu 0 302 246 1819 103 4 0 chr1 131860071 131860313 -150333351 - AluSg SINE Alu -67 243 1 262 335 86 13 chr1 131860314 131860466 -150333198 + MIR SINE MIR 99 261 -1 184 319 42 0 chr1 131860674 131860746 -150332918 + L2 LINE L2 3183 3257 -56 193 331 134 53 chr1 131861182 131861502 -150332162 - L2 LINE L2 -11 3261 2916 41833 43 2 1 chr1 131861919 131868061 -150325603 + L1PA3 LINE L1 8 6152 -3 323 286 38 9 chr1 131868711 131868816 -150324848 - MER81 DNA DNA 0 114 7 406 286 48 27 chr1 131869465 131869612 -150324052 - MER5A DNA MER1_type -22 167 18 543 245 82 31 chr1 131869741 131869937 -150323727 + MIR SINE MIR 57 262 0 912 328 40 21 chr1 131870292 131870412 -150323252 + L2 LINE L2 2326 2442 -872 1865 135 123 12 chr1 131870412 131870738 -150322926 - THE1B LTR MaLR 0 364 3 912 328 40 21 chr1 131870738 131871038 -150322626 + L2 LINE L2 2442 2754 -560 517 203 0 43 chr1 131871038 131871176 -150322488 + MLT2B2 LTR ERVL 1 132 -383 1619 169 42 56 chr1 131871183 131871233 -150322431 - MLT1A1 LTR MaLR -15 350 301 325 202 12 0 chr1 131871233 131871317 -150322347 + L1PA16 LINE L1 6071 6155 -11 1619 169 42 56 chr1 131871317 131871621 -150322043 - MLT1A1 LTR MaLR -64 301 1 857 226 86 104 chr1 131871621 131871982 -150321682 + MLT2B1 LTR ERVL 126 480 -40 405 0 0 0 chr1 131871982 131872027 -150321637 + (CA)n Simple_repeat Simple_repeat 2 46 0 857 226 86 104 chr1 131872027 131872068 -150321596 + MLT2B1 LTR ERVL 480 520 0 651 298 83 67 chr1 131872069 131872575 -150321089 + L2 LINE L2 2751 3272 0 452 238 102 14 chr1 131873676 131873823 -150319841 + MER63A DNA MER1_type 49 208 -2 596 255 115 19 chr1 131873827 131874035 -150319629 + MIR SINE MIR 22 249 -13 183 80 0 0 chr1 131874571 131874596 -150319068 + (TAAAAA)n Simple_repeat Simple_repeat 5 29 0 2068 116 53 47 chr1 131875377 131875628 -150318036 - THE1B LTR MaLR -1 363 108 2344 108 0 3 chr1 131875628 131875942 -150317722 + AluSp SINE Alu 1 313 0 2068 116 53 47 chr1 131875942 131876051 -150317613 - THE1B LTR MaLR -256 108 1 2701 133 7 16 chr1 131876058 131876511 -150317153 - L1MA9 LINE L1 0 6312 5864 206 151 57 0 chr1 131876746 131876799 -150316865 + (TTTAA)n Simple_repeat Simple_repeat 1 56 0 282 327 37 9 chr1 131877418 131877525 -150316139 - L2 LINE L2 -9 3263 3154 213 169 0 85 chr1 131877860 131877919 -150315745 - L2 LINE L2 -1 3312 3259 856 225 55 71 chr1 131878132 131878155 -150315509 + MIR SINE MIR 13 35 -227 2419 76 0 0 chr1 131878155 131878446 -150315218 + AluSg SINE Alu 1 291 -19 856 225 55 71 chr1 131878446 131878675 -150314989 + MIR SINE MIR 35 261 -1 263 377 57 0 chr1 131879175 131879297 -150314367 - L2 LINE L2 -6 3266 3138 215 272 136 25 chr1 131880357 131880438 -150313226 - MER91C DNA MER1_type -32 108 19 2336 117 0 0 chr1 131882172 131882574 -150311090 + AluSg SINE Alu 1 402 0 687 191 58 6 chr1 131882583 131882756 -150310908 + MER33 DNA MER1_type 2 183 -141 414 108 0 0 chr1 131882758 131882832 -150310832 - L1MA7 LINE L1 0 6291 6218 41224 30 21 1 chr1 131882832 131888861 -150304803 + L1HS LINE L1 2 6153 -2 470 100 0 0 chr1 131888876 131888946 -150304718 - L1MA7 LINE L1 -59 6232 6163 496 154 112 7 chr1 131888946 131889089 -150304575 + MER33 DNA MER1_type 205 362 -1 1493 222 77 18 chr1 131889104 131889496 -150304168 - MLT1C LTR MaLR 0 467 53 361 277 31 37 chr1 131889719 131889899 -150303765 + MIR SINE MIR 30 206 -56 278 316 15 44 chr1 131890042 131890178 -150303486 + L2 LINE L2 2608 2739 -575 333 252 98 8 chr1 131891050 131891173 -150302491 - MER94 DNA DNA 0 134 1 254 239 15 0 chr1 131891199 131891266 -150302398 - MER94 DNA DNA -66 68 1 407 230 65 14 chr1 131891354 131891493 -150302171 - MER103 DNA DNA -13 153 8 25 0 0 0 chr1 131892884 131892909 -150300755 + AT_rich Low_complexity Low_complexity 1 25 0 1933 124 22 4 chr1 131892920 131893220 -150300444 + AluSp SINE Alu 3 307 0 215 191 24 0 chr1 131893311 131893353 -150300311 + L3b LINE CR1 1294 1336 -247 3229 86 113 17 chr1 131893691 131894229 -150299435 - LTR10E LTR ERV1 -43 590 1 477 242 70 0 chr1 131895304 131895432 -150298232 + MER45A DNA AcHobo 42 178 0 414 258 10 3 chr1 131895579 131895689 -150297975 + MIR SINE MIR 36 143 -67 1073 231 117 35 chr1 131895873 131896302 -150297362 - LTR16B LTR ERVL 0 464 1 204 245 0 20 chr1 131896675 131896724 -150296940 + GA-rich Low_complexity Low_complexity 3 50 0 334 369 2 0 chr1 131896777 131896915 -150296749 - MIR SINE MIR -63 145 29 24 77 0 0 chr1 131897260 131897312 -150296352 + AT_rich Low_complexity Low_complexity 1 52 0 24 67 0 0 chr1 131897672 131897717 -150295947 + AT_rich Low_complexity Low_complexity 1 45 0 192 286 95 0 chr1 131897962 131898025 -150295639 - L3 LINE CR1 -56 1521 1453 2395 167 58 10 chr1 131898032 131898445 -150295219 - L1PA15 LINE L1 0 6165 5733 196 259 12 35 chr1 131898530 131898615 -150295049 - L3 LINE CR1 -307 1270 1188 239 303 0 0 chr1 131898757 131898833 -150294831 + MIR SINE MIR 124 199 -63 472 263 45 19 chr1 131898854 131899010 -150294654 + MLT1J2 LTR MaLR 3 162 -288 432 302 151 15 chr1 131899162 131899367 -150294297 + MLT1J2 LTR MaLR 185 417 -33 211 315 0 0 chr1 131899456 131899510 -150294154 + (CCA)n Simple_repeat Simple_repeat 1 54 0 734 351 88 42 chr1 131899537 131900457 -150293207 - L3 LINE CR1 -546 1031 70 294 255 109 33 chr1 131900641 131900836 -150292828 - MIR3 SINE MIR -8 254 9 464 216 47 108 chr1 131901484 131901632 -150292032 + MIR SINE MIR 15 153 -109 482 263 101 39 chr1 131901863 131902042 -150291622 - MER102b DNA MER1_type -51 290 101 24 0 0 0 chr1 131902811 131902835 -150290829 + AT_rich Low_complexity Low_complexity 1 24 0 802 158 8 8 chr1 131902849 131902982 -150290682 - FLAM_C SINE Alu 0 133 1 306 0 0 0 chr1 131903005 131903039 -150290625 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2428 88 0 0 chr1 131903091 131903386 -150290278 + AluY SINE Alu 1 295 -16 464 274 102 19 chr1 131904325 131904482 -150289182 - MIR3 SINE MIR -11 197 28 212 352 51 64 chr1 131906405 131906641 -150287023 + L2 LINE L2 3027 3259 -13 493 219 115 59 chr1 131908126 131908312 -150285352 + MIR SINE MIR 52 252 -10 199 378 44 0 chr1 131908410 131908500 -150285164 - MIR SINE MIR -66 142 49 1121 276 107 13 chr1 131908571 131908955 -150284709 + MLT1J2 LTR MaLR 3 422 -28 562 312 84 0 chr1 131909925 131910132 -150283532 + MIR SINE MIR 34 256 -6 633 270 63 42 chr1 131910655 131910940 -150282724 + L2 LINE L2 3019 3309 -4 239 351 0 0 chr1 131911725 131911802 -150281862 - L2 LINE L2 -11 3302 3226 311 326 68 50 chr1 131912607 131912814 -150280850 + MIR SINE MIR 5 212 -50 346 262 71 28 chr1 131913078 131913219 -150280445 + MIR SINE MIR 90 236 -26 252 395 60 12 chr1 131913282 131913449 -150280215 + MIR SINE MIR 34 208 -54 211 243 14 29 chr1 131914408 131914478 -150279186 + CT-rich Low_complexity Low_complexity 3 71 0 209 172 30 40 chr1 131914769 131914868 -150278796 + (TATG)n Simple_repeat Simple_repeat 4 101 0 180 0 0 0 chr1 131915086 131915106 -150278558 + (A)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr1 131916194 131916215 -150277449 + (CA)n Simple_repeat Simple_repeat 1 21 0 499 260 24 16 chr1 131916816 131916943 -150276721 + MIR3 SINE MIR 33 160 -48 391 236 130 43 chr1 131916943 131917104 -150276560 + MER5B DNA MER1_type 1 175 -3 980 161 80 0 chr1 131917149 131917311 -150276353 - MER5A DNA MER1_type -6 183 9 2218 108 14 0 chr1 131917873 131918168 -150275496 + AluSq SINE Alu 1 299 -14 185 282 75 98 chr1 131918616 131918790 -150274874 + MIR3 SINE MIR 13 182 -26 270 306 98 46 chr1 131920100 131920273 -150273391 + MIR SINE MIR 52 233 -29 817 157 16 0 chr1 131920295 131920416 -150273248 - FLAM_C SINE Alu -20 123 1 856 309 148 23 chr1 131921933 131922418 -150271246 + MLT1K LTR MaLR 43 588 0 2035 143 3 19 chr1 131923431 131923746 -150269918 + AluSx SINE Alu 1 310 -2 1232 88 0 6 chr1 131923750 131923837 -150269827 + (GAAA)n Simple_repeat Simple_repeat 1 266 0 1232 88 0 6 chr1 131923837 131924018 -150269646 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 421 301 80 54 chr1 131924478 131924717 -150268947 - L2 LINE L2 -204 3068 2824 291 213 306 0 chr1 131924746 131924854 -150268810 - MIR SINE MIR -10 252 112 207 316 104 69 chr1 131924831 131925119 -150268545 - L2 LINE L2 -474 2840 2543 * 206 189 0 0 chr1 131925904 131925941 -150267723 - MIR SINE MIR -114 148 112 187 242 0 0 chr1 131926086 131926119 -150267545 + L3 LINE CR1 1435 1467 -110 1517 141 45 0 chr1 131926461 131926681 -150266983 - MER30 DNA MER1_type 0 230 1 350 235 10 41 chr1 131927795 131927893 -150265771 - L2 LINE L2 -18 3295 3201 189 281 53 40 chr1 131928078 131928207 -150265457 - MIR SINE MIR -61 147 21 597 283 137 9 chr1 131928486 131928712 -150264952 - MIR SINE MIR 0 262 8 1899 181 99 11 chr1 131931596 131931960 -150261704 - MSTD LTR MaLR 0 396 1 188 336 104 24 chr1 131932826 131932951 -150260713 + L2 LINE L2 3138 3272 0 367 355 39 26 chr1 131934384 131934615 -150259049 - L2 LINE L2 -198 3074 2841 707 268 24 0 chr1 131935290 131935454 -150258210 + MIR SINE MIR 1 168 -94 364 221 13 0 chr1 131936653 131936730 -150256934 + MER116 DNA Mariner 3 80 0 223 261 0 0 chr1 131938782 131938828 -150254836 - L2 LINE L2 -83 3230 3185 378 236 11 22 chr1 131939243 131939425 -150254239 + (CA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr1 131940031 131940054 -150253610 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2294 108 0 0 chr1 131940056 131940361 -150253303 - AluSg SINE Alu -5 305 1 234 0 0 0 chr1 131940889 131940915 -150252749 + (TTG)n Simple_repeat Simple_repeat 2 27 0 377 291 45 0 chr1 131941588 131941698 -150251966 + MIR SINE MIR 27 141 -121 434 274 220 4 chr1 131942216 131942457 -150251207 + L2 LINE L2 2864 3156 -157 214 291 47 47 chr1 131943271 131943357 -150250307 + MIR3 SINE MIR 6 91 -117 22 35 0 0 chr1 131943710 131943739 -150249925 + AT_rich Low_complexity Low_complexity 1 29 0 243 278 0 0 chr1 131944989 131945043 -150248621 + L2 LINE L2 3219 3272 0 265 307 47 143 chr1 131946534 131946876 -150246788 - L2 LINE L2 -18 3254 2946 5508 93 11 26 chr1 131946900 131947062 -150246602 + L1PA10 LINE L1 5327 5490 -678 1919 178 0 6 chr1 131947062 131947376 -150246288 + AluSx SINE Alu 1 312 0 5508 93 11 26 chr1 131947376 131948062 -150245602 + L1PA10 LINE L1 5490 6162 -6 478 303 100 56 chr1 131948136 131948832 -150244832 + L2 LINE L2 2577 3307 -6 473 281 91 8 chr1 131950512 131950643 -150243021 - MIR SINE MIR -64 144 1 1609 170 0 14 chr1 131951398 131951687 -150241977 + AluJo SINE Alu 26 310 -2 374 307 21 85 chr1 131951944 131952133 -150241531 - MIR3 SINE MIR -14 194 18 195 358 62 0 chr1 131953032 131953113 -150240551 - MIR SINE MIR -175 87 2 273 178 0 41 chr1 131954833 131954906 -150238758 + L2 LINE L2 3159 3228 -85 237 285 21 59 chr1 131955326 131955512 -150238152 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 194 324 207 26 chr1 131956399 131956708 -150236956 - L3b LINE CR1 -69 1514 1150 2033 113 29 0 chr1 131957169 131957355 -150236309 - AluSg SINE Alu 0 315 116 261 0 0 0 chr1 131957355 131957384 -150236280 + (TG)n Simple_repeat Simple_repeat 2 30 0 2033 113 29 0 chr1 131957384 131957504 -150236160 - AluSg SINE Alu -199 116 1 288 286 0 0 chr1 131958420 131958490 -150235174 + tRNA-Ile-ATT tRNA tRNA 1 70 -7 320 333 121 15 chr1 131959288 131959420 -150234244 + MIR3 SINE MIR 54 199 -9 2016 130 0 0 chr1 131960875 131961196 -150232468 - AluSx SINE Alu 0 321 1 410 319 118 0 chr1 131961272 131961476 -150232188 + MIR SINE MIR 17 244 -18 337 235 151 8 chr1 131965016 131965135 -150228529 - L2 LINE L2 -18 3295 3160 229 240 0 0 chr1 131966560 131966610 -150227054 + MIR SINE MIR 83 132 -76 301 297 20 0 chr1 131966923 131967024 -150226640 + MIR3 SINE MIR 65 167 -41 453 184 95 34 chr1 131967144 131967291 -150226373 - MIR SINE MIR -2 260 105 299 217 33 0 chr1 131967799 131967859 -150225805 - L2 LINE L2 -22 3291 3230 2085 120 20 0 chr1 131969026 131969375 -150224289 - L1P4 LINE L1 -557 5609 5254 3154 105 20 30 chr1 131969376 131969605 -150224059 + L1PA16 LINE L1 5666 5896 -270 2022 170 0 3 chr1 131969605 131969917 -150223747 + AluJb SINE Alu 1 311 -1 3154 105 20 30 chr1 131969917 131970184 -150223480 + L1PA16 LINE L1 5896 6157 -9 550 345 50 14 chr1 131970319 131970539 -150223125 - MIR SINE MIR -33 229 2 24 0 0 0 chr1 131971202 131971226 -150222438 + AT_rich Low_complexity Low_complexity 1 24 0 286 281 53 26 chr1 131972093 131972207 -150221457 - L2 LINE L2 0 3313 3197 452 311 26 13 chr1 131972293 131972444 -150221220 + MIR SINE MIR 28 180 -82 432 176 11 33 chr1 131972767 131972858 -150220806 + L2 LINE L2 3225 3313 0 300 222 77 17 chr1 131973518 131973607 -150220057 + MIR SINE MIR 84 176 -32 32 26 0 0 chr1 131976723 131976762 -150216902 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr1 131977094 131977123 -150216541 + AT_rich Low_complexity Low_complexity 1 29 0 319 350 8 0 chr1 131977916 131978033 -150215631 + MIR SINE MIR 32 149 -113 189 211 0 0 chr1 131978220 131978258 -150215406 - MIR SINE MIR -69 139 102 458 267 53 27 chr1 131979490 131979677 -150213987 + MER117 DNA MER1_type 2 193 -4 2253 171 30 21 chr1 131982448 131982875 -150210789 + Tigger2a DNA MER2_type 1 431 -3 1384 159 12 31 chr1 131986468 131986726 -150206938 + MLT1A1 LTR MaLR 113 365 0 364 231 0 111 chr1 131986841 131987040 -150206624 + L1MC4 LINE L1 7866 8042 0 2355 62 0 36 chr1 131987151 131987456 -150206208 + AluY SINE Alu 1 294 -17 573 191 9 0 chr1 131987845 131987955 -150205709 - MER96B DNA MER1_type? 0 417 307 3771 37 4 0 chr1 131987956 131988413 -150205251 - L1PA4 LINE L1 -3 6152 5694 423 0 0 0 chr1 131988413 131988461 -150205203 + L1PA4 LINE L1 5663 5710 -445 850 127 122 55 chr1 131988461 131988551 -150205113 + MER96B DNA MER1_type? 93 175 -242 1607 209 53 11 chr1 131988551 131988910 -150204754 + MLT1A2 LTR MaLR 1 374 0 850 127 122 55 chr1 131988910 131989056 -150204608 + MER96B DNA MER1_type? 175 345 -72 270 0 0 0 chr1 131989504 131989534 -150204130 + (GA)n Simple_repeat Simple_repeat 2 31 0 212 194 0 40 chr1 131990535 131990597 -150203067 + A-rich Low_complexity Low_complexity 1 94 0 195 349 15 0 chr1 131991999 131992065 -150201599 + MER5A DNA MER1_type 63 129 -60 334 301 89 27 chr1 131992078 131992224 -150201440 - MIR3 SINE MIR -46 162 8 220 367 31 31 chr1 131992223 131992351 -150201313 - L2 LINE L2 -9 3263 3136 * 342 214 4 0 chr1 131994067 131994146 -150199518 + MLT1J2 LTR MaLR 266 327 -123 370 254 9 18 chr1 131994347 131994461 -150199203 + MLT1G1 LTR MaLR 224 336 -259 301 180 302 22 chr1 131994505 131994644 -150199020 + MLT1G1 LTR MaLR 413 590 0 302 161 58 46 chr1 131994645 131994732 -150198932 + MLT1I LTR MaLR 318 405 -4 361 323 8 2 chr1 131994892 131995012 -150198652 - MIR SINE MIR -68 140 18 543 280 98 25 chr1 131995910 131996228 -150197436 + L1MC4a LINE L1 5488 5828 -1980 205 254 16 16 chr1 131996347 131996410 -150197254 + (TA)n Simple_repeat Simple_repeat 1 63 0 288 333 70 39 chr1 131997471 131997627 -150196037 - L2 LINE L2 0 3272 3112 22 35 0 0 chr1 131998234 131998263 -150195401 + AT_rich Low_complexity Low_complexity 1 29 0 200 279 0 0 chr1 131998647 131998690 -150194974 + MER5B DNA MER1_type 1 43 -135 2255 112 27 0 chr1 131998691 131998986 -150194678 - AluSx SINE Alu -9 303 1 1899 131 156 8 chr1 132000357 132000723 -150192941 + MSTA LTR MaLR 9 428 0 2317 122 0 3 chr1 132003067 132003378 -150190286 - AluSq SINE Alu -3 310 1 517 255 87 49 chr1 132003557 132003763 -150189901 - MIR SINE MIR -30 232 18 246 62 0 0 chr1 132004242 132004274 -150189390 + (CA)n Simple_repeat Simple_repeat 2 33 0 756 281 24 40 chr1 132005982 132006235 -150187429 + MIR SINE MIR 2 250 -12 798 270 13 40 chr1 132007449 132007675 -150185989 - MIR SINE MIR -38 224 5 181 264 94 0 chr1 132007777 132007830 -150185834 + MIR SINE MIR 196 253 -9 349 280 38 45 chr1 132007878 132008010 -150185654 - L2 LINE L2 -18 3295 3165 340 233 23 23 chr1 132008872 132008958 -150184706 - MIR3 SINE MIR -6 202 117 186 103 0 0 chr1 132010108 132010137 -150183527 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2293 72 0 20 chr1 132011306 132011599 -150182065 - AluSg1 SINE Alu -9 300 14 333 0 0 0 chr1 132011780 132011817 -150181847 + (CA)n Simple_repeat Simple_repeat 2 38 0 234 62 0 0 chr1 132015566 132015598 -150178066 + (TG)n Simple_repeat Simple_repeat 2 33 0 414 103 39 0 chr1 132018616 132018694 -150174970 + CT-rich Low_complexity Low_complexity 2 82 0 1478 125 0 26 chr1 132021054 132021286 -150172378 + AluJb SINE Alu 87 312 0 342 286 9 27 chr1 132022695 132022807 -150170857 + MIR SINE MIR 42 151 -57 285 75 0 0 chr1 132022955 132022995 -150170669 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 21 36 0 0 chr1 132023275 132023303 -150170361 + AT_rich Low_complexity Low_complexity 1 28 0 582 226 59 70 chr1 132026462 132026648 -150167016 - MIR SINE MIR 0 262 79 303 274 137 27 chr1 132028895 132029041 -150164623 + HAL1 LINE L1 1041 1202 -1305 26 0 0 0 chr1 132030213 132030239 -150163425 + AT_rich Low_complexity Low_complexity 1 26 0 208 130 43 22 chr1 132030534 132030580 -150163084 + (GGGTG)n Simple_repeat Simple_repeat 3 49 0 342 61 0 0 chr1 132032437 132032486 -150161178 + (TC)n Simple_repeat Simple_repeat 2 50 0 396 0 0 0 chr1 132032486 132032530 -150161134 + (CA)n Simple_repeat Simple_repeat 1 44 0 192 227 216 23 chr1 132033300 132033388 -150160276 - MIR SINE MIR -72 136 32 183 42 0 0 chr1 132033665 132033689 -150159975 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 253 181 14 56 chr1 132033818 132033890 -150159774 + GA-rich Low_complexity Low_complexity 5 73 0 2269 112 0 0 chr1 132034050 132034353 -150159311 + AluSq SINE Alu 1 303 -10 253 302 0 0 chr1 132035203 132035266 -150158398 - L2 LINE L2 0 3313 3251 263 121 17 0 chr1 132035278 132035336 -150158328 + (TG)n Simple_repeat Simple_repeat 2 60 0 204 302 0 0 chr1 132035761 132035824 -150157840 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 1008 124 95 54 chr1 132035942 132036184 -150157480 - L1MA8 LINE L1 -6 6285 6034 23 0 0 0 chr1 132038555 132038578 -150155086 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 132040056 132040076 -150153588 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 214 305 0 37 chr1 132040253 132040335 -150153329 + L2 LINE L2 3191 3269 -3 248 286 110 22 chr1 132040486 132040577 -150153087 + L2 LINE L2 3137 3235 -37 487 191 121 32 chr1 132041596 132041753 -150151911 + MARNA DNA Mariner 18 188 -398 7154 248 107 26 chr1 132042486 132043653 -150150011 + L2 LINE L2 441 1512 -1801 1479 213 57 63 chr1 132043653 132044113 -150149551 + MSTB2 LTR MaLR 1 457 0 7154 248 107 26 chr1 132044113 132044659 -150149005 + L2 LINE L2 1512 2012 -1301 1655 191 6 31 chr1 132044659 132044978 -150148686 - AluJb SINE Alu -1 311 1 7154 248 107 26 chr1 132044978 132045697 -150147967 + L2 LINE L2 2012 3116 -197 2003 182 34 13 chr1 132045697 132046077 -150147587 - MLT1B LTR MaLR 0 390 3 7154 248 107 26 chr1 132046077 132046286 -150147378 + L2 LINE L2 3116 3307 -6 2828 16 3 0 chr1 132046631 132046941 -150146723 - AluY SINE Alu 0 311 1 813 250 22 0 chr1 132048688 132048872 -150144792 - MER5A DNA MER1_type 0 189 2 739 235 147 70 chr1 132049011 132049400 -150144264 - MLT1J LTR MaLR -34 477 49 4174 162 60 8 chr1 132049400 132050185 -150143479 + LTR1B LTR ERV1 1 826 0 739 235 147 70 chr1 132050185 132050238 -150143426 - MLT1J LTR MaLR -462 49 1 40027 38 25 2 chr1 132051101 132057118 -150136546 + L1PA3 LINE L1 1 6155 0 23 0 0 0 chr1 132057874 132057897 -150135767 + AT_rich Low_complexity Low_complexity 1 23 0 195 278 56 28 chr1 132057961 132058033 -150135631 + MIR3 SINE MIR 10 83 -125 257 314 161 8 chr1 132058036 132058154 -150135510 + L2 LINE L2 3133 3268 -4 273 207 12 37 chr1 132058157 132058239 -150135425 - MER116 DNA Mariner 0 80 1 324 316 139 6 chr1 132059211 132059369 -150134295 + MIR SINE MIR 75 253 -9 259 266 113 16 chr1 132059557 132059681 -150133983 + MER3 DNA MER1_type 28 163 -46 630 290 52 39 chr1 132059756 132059929 -150133735 + MIR SINE MIR 28 206 -56 890 197 38 6 chr1 132059929 132060112 -150133552 - MER5A DNA MER1_type 0 189 1 630 290 52 39 chr1 132060112 132060169 -150133495 + MIR SINE MIR 206 261 -1 2367 65 0 23 chr1 132060586 132060892 -150132772 - AluY SINE Alu -12 299 1 2976 176 26 16 chr1 132060892 132061439 -150132225 + MLT2B3 LTR ERVL 2 553 -1 189 310 121 26 chr1 132062105 132062221 -150131443 - MIR SINE MIR -94 168 42 399 272 57 19 chr1 132062536 132062694 -150130970 + MIR SINE MIR 50 213 -49 2452 137 0 0 chr1 132063900 132064266 -150129398 + MER47A DNA MER2_type 1 366 0 27 49 0 0 chr1 132064276 132064317 -150129347 + AT_rich Low_complexity Low_complexity 1 41 0 346 277 220 0 chr1 132065825 132065966 -150127698 + MIR SINE MIR 88 259 -3 1969 128 13 16 chr1 132066393 132066705 -150126959 + AluSp SINE Alu 1 311 -2 199 333 0 0 chr1 132068028 132068088 -150125576 - L2 LINE L2 -8 3305 3246 621 354 124 0 chr1 132068176 132068507 -150125157 + L2 LINE L2 2384 2755 -559 2183 116 0 3 chr1 132069145 132069446 -150124218 - AluSx SINE Alu -9 303 4 465 269 43 7 chr1 132069554 132069695 -150123969 + MIR SINE MIR 106 251 -11 219 218 0 0 chr1 132069799 132069854 -150123810 + (TATG)n Simple_repeat Simple_repeat 2 56 0 222 160 0 0 chr1 132069892 132069942 -150123722 + GA-rich Low_complexity Low_complexity 2 51 0 208 212 0 0 chr1 132070543 132070576 -150123088 + MIR SINE MIR 47 79 -183 210 388 92 0 chr1 132070691 132070789 -150122875 + MIR3 SINE MIR 73 179 -29 612 193 118 0 chr1 132070959 132071078 -150122586 - FLAM_A SINE Alu 0 133 1 206 245 181 32 chr1 132071179 132071273 -150122391 - MIR SINE MIR -36 226 119 850 154 47 12 chr1 132072015 132072184 -150121480 - MER3 DNA MER1_type -81 128 1 885 249 53 8 chr1 132072260 132072505 -150121159 + MIR SINE MIR 5 260 -2 23 0 0 0 chr1 132073067 132073090 -150120574 + AT_rich Low_complexity Low_complexity 1 23 0 282 205 141 13 chr1 132074269 132074347 -150119317 - MIR SINE MIR -7 255 168 259 241 81 35 chr1 132074487 132074574 -150119090 + L2 LINE L2 3168 3258 -55 1937 161 52 0 chr1 132074992 132075339 -150118325 - MLT1A1 LTR MaLR 0 365 1 250 409 88 11 chr1 132076281 132076462 -150117202 - L3 LINE CR1 -4 1573 1379 217 220 0 0 chr1 132076463 132076522 -150117142 + (CA)n Simple_repeat Simple_repeat 1 59 0 200 200 25 0 chr1 132076705 132076745 -150116919 + CT-rich Low_complexity Low_complexity 1 41 0 225 65 0 0 chr1 132076745 132076776 -150116888 + (T)n Simple_repeat Simple_repeat 1 31 0 2071 122 0 33 chr1 132076818 132077122 -150116542 - AluSg1 SINE Alu -15 294 1 24 53 0 0 chr1 132078060 132078098 -150115566 + AT_rich Low_complexity Low_complexity 1 38 0 222 273 20 71 chr1 132078399 132078498 -150115166 + L2 LINE L2 3213 3306 -7 328 246 54 23 chr1 132078524 132078654 -150115010 - L2 LINE L2 -1379 1935 1802 755 232 174 13 chr1 132078664 132078888 -150114776 + MIR SINE MIR 3 262 0 768 126 0 16 chr1 132078910 132079037 -150114627 - L1MD2 LINE L1 -17 6342 6218 1489 161 68 68 chr1 132079086 132079250 -150114414 + LTR1 LTR ERV1 31 194 -591 2024 106 10 30 chr1 132079250 132079551 -150114113 + AluSx SINE Alu 1 295 -17 189 0 0 0 chr1 132079555 132079576 -150114088 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1489 161 68 68 chr1 132079576 132079786 -150113878 + LTR1 LTR ERV1 196 410 -375 3388 265 40 15 chr1 132079786 132081022 -150112642 + L2 LINE L2 2044 3313 0 326 332 62 62 chr1 132081055 132081377 -150112287 + L1MC4a LINE L1 5770 6091 -1717 4823 111 8 15 chr1 132081494 132082227 -150111437 - L1PA13 LINE L1 -2 6161 5434 2145 104 34 7 chr1 132082229 132082526 -150111138 - AluSx SINE Alu -7 305 1 34 24 0 0 chr1 132082557 132082598 -150111066 + AT_rich Low_complexity Low_complexity 1 41 0 776 281 35 47 chr1 132083164 132083506 -150110158 - MLT1I LTR MaLR 0 409 72 496 229 0 0 chr1 132083567 132083672 -150109992 + MER58B DNA MER1_type 1 105 -236 248 230 0 14 chr1 132083682 132083756 -150109908 + GA-rich Low_complexity Low_complexity 2 74 0 339 226 24 24 chr1 132083769 132083853 -150109811 + MER58B DNA MER1_type 258 341 0 553 217 8 15 chr1 132084084 132084230 -150109434 + L1MB2 LINE L1 5140 5286 -860 1480 162 20 57 chr1 132084230 132084526 -150109138 + AluJo SINE Alu 1 285 -27 553 217 8 15 chr1 132084526 132084538 -150109126 + L1MB2 LINE L1 5286 5297 -849 58 54 0 0 chr1 132084538 132084631 -150109033 + AT_rich Low_complexity Low_complexity 1 93 0 4396 161 17 24 chr1 132084631 132085511 -150108153 + L1MB2 LINE L1 5270 6143 -28 300 351 46 0 chr1 132085643 132085794 -150107870 - L2 LINE L2 -925 2389 2232 1864 142 0 86 chr1 132085797 132086135 -150107529 + AluSx SINE Alu 1 309 -3 300 220 10 20 chr1 132086139 132086239 -150107425 + GA-rich Low_complexity Low_complexity 2 100 0 1873 117 3 80 chr1 132086478 132086803 -150106861 - AluJb SINE Alu -12 300 1 21 57 0 0 chr1 132086916 132086951 -150106713 + AT_rich Low_complexity Low_complexity 1 35 0 216 24 48 24 chr1 132086996 132087038 -150106626 + (TA)n Simple_repeat Simple_repeat 1 43 0 1143 207 95 0 chr1 132087053 132087612 -150106052 - L1ME2 LINE L1 -11 6153 5361 2127 106 3 0 chr1 132087626 132087910 -150105754 - AluSg SINE Alu -25 285 1 2381 219 55 35 chr1 132088086 132088154 -150105510 - L1ME2 LINE L1 -772 5374 5309 2156 128 3 0 chr1 132088154 132088459 -150105205 + AluSx SINE Alu 1 306 -6 2381 219 55 35 chr1 132088459 132088954 -150104710 - L1ME2 LINE L1 -837 5309 4826 7278 35 11 0 chr1 132088954 132090175 -150103489 - L1PA2 LINE L1 -1 6154 4938 2381 219 55 35 chr1 132090175 132090412 -150103252 - L1ME2 LINE L1 -1320 4826 4553 2355 94 6 9 chr1 132090412 132090754 -150102910 + L1PA13 LINE L1 5814 6154 -9 2381 219 55 35 chr1 132090754 132090784 -150102880 - L1ME2 LINE L1 -1593 4553 4525 2035 298 33 35 chr1 132090795 132090829 -150102835 + L1ME LINE L1 2 35 -6035 1207 204 54 49 chr1 132090829 132091216 -150102448 - MLT1B LTR MaLR -1 389 1 2035 298 33 35 chr1 132091216 132092215 -150101449 + L1ME LINE L1 35 1033 -5037 257 330 0 19 chr1 132093050 132093153 -150100511 + Charlie7 DNA MER1_type 1 101 -2511 2651 82 8 0 chr1 132093199 132093551 -150100113 + THE1A LTR MaLR 1 355 0 10520 76 6 79 chr1 132093551 132095256 -150098408 + THE1A-int LTR MaLR 1 1580 0 2472 93 29 0 chr1 132095256 132095601 -150098063 + THE1A LTR MaLR 1 355 0 651 262 78 34 chr1 132095695 132096167 -150097497 + L1ME LINE L1 2610 3112 -2968 1845 120 4 15 chr1 132096167 132096434 -150097230 + AluSx SINE Alu 49 312 0 651 262 78 34 chr1 132096434 132096522 -150097142 + L1ME LINE L1 3112 3195 -2885 783 179 55 32 chr1 132096536 132096754 -150096910 + Charlie1 DNA MER1_type 1884 2106 -655 717 290 86 34 chr1 132096754 132096964 -150096700 + L1ME LINE L1 4941 5139 -957 2498 72 0 3 chr1 132096964 132097268 -150096396 + AluY SINE Alu 1 303 -8 717 290 86 34 chr1 132097268 132097826 -150095838 + L1ME LINE L1 5139 5745 -351 313 345 25 25 chr1 132098466 132098585 -150095079 - MIR SINE MIR -124 138 20 186 103 0 0 chr1 132099582 132099611 -150094053 + (TC)n Simple_repeat Simple_repeat 2 30 0 312 27 0 0 chr1 132099611 132099648 -150094016 + (CA)n Simple_repeat Simple_repeat 1 37 0 183 359 84 14 chr1 132100493 132100635 -150093029 - L2 LINE L2 -579 2735 2584 221 184 0 0 chr1 132100789 132100827 -150092837 + MIR SINE MIR 60 97 -165 353 274 59 30 chr1 132100903 132101038 -150092626 + MIR SINE MIR 96 234 -28 1127 133 5 31 chr1 132101039 132101234 -150092430 - AluSg/x SINE Alu -18 294 105 766 161 0 0 chr1 132101334 132101458 -150092206 + FRAM SINE Alu 21 144 -32 225 0 0 0 chr1 132101458 132101483 -150092181 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4726 114 70 6 chr1 132101574 132101618 -150092046 + L1MA8 LINE L1 5444 5484 -807 2095 113 39 0 chr1 132101618 132101901 -150091763 + AluSx SINE Alu 1 294 -18 4726 114 70 6 chr1 132101901 132102652 -150091012 + L1MA8 LINE L1 5484 6290 -1 455 270 91 15 chr1 132103317 132103580 -150090084 + L1MC5 LINE L1 7507 7789 -172 1717 166 32 29 chr1 132103592 132103900 -150089764 + AluJo SINE Alu 3 311 -1 180 0 0 0 chr1 132104096 132104116 -150089548 + (TCCA)n Simple_repeat Simple_repeat 4 23 0 186 347 31 20 chr1 132104153 132104251 -150089413 + L3 LINE CR1 409 507 -1070 467 354 79 20 chr1 132104968 132105273 -150088391 + L3 LINE CR1 1081 1403 -174 431 171 13 13 chr1 132105442 132105518 -150088146 - MER2 DNA MER2_type 0 345 270 2087 152 21 24 chr1 132105543 132105918 -150087746 + L1PB4 LINE L1 5782 6155 -1 1222 157 5 5 chr1 132106009 132106213 -150087451 - MER2 DNA MER2_type -135 210 7 276 257 106 30 chr1 132107567 132107856 -150085808 - L1ME LINE L1 -712 5458 5146 207 0 0 0 chr1 132107934 132107957 -150085707 + (TG)n Simple_repeat Simple_repeat 1 23 0 234 268 0 0 chr1 132107957 132108013 -150085651 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 909 260 70 39 chr1 132108037 132108449 -150085215 - L1ME LINE L1 -1109 5037 4613 415 222 0 11 chr1 132108508 132108598 -150085066 - L1ME LINE L1 -1537 4609 4521 21 36 0 0 chr1 132110689 132110717 -150082947 + AT_rich Low_complexity Low_complexity 1 28 0 242 354 109 0 chr1 132111584 132111731 -150081933 - MIR SINE MIR -98 164 2 213 273 47 62 chr1 132111785 132111900 -150081764 - MIR SINE MIR -59 149 38 967 207 84 106 chr1 132111929 132112077 -150081587 + MSTD LTR MaLR 1 151 -245 2137 113 0 0 chr1 132112077 132112359 -150081305 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr1 132112362 132112385 -150081279 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 967 207 84 106 chr1 132112385 132112637 -150081027 + MSTD LTR MaLR 153 396 0 968 138 66 0 chr1 132113156 132113323 -150080341 - AluJo SINE Alu -16 296 119 1516 126 11 30 chr1 132113323 132113586 -150080078 + L1MB5 LINE L1 5909 6166 -8 210 263 0 0 chr1 132114662 132114719 -150078945 + T-rich Low_complexity Low_complexity 1 57 0 810 196 0 7 chr1 132115235 132115378 -150078286 - AluJo SINE Alu -170 142 1 385 348 43 7 chr1 132116389 132116527 -150077137 + L2 LINE L2 3122 3264 -8 801 155 14 140 chr1 132117103 132117310 -150076354 + MER5A DNA MER1_type 1 181 -8 1085 136 17 6 chr1 132117417 132117593 -150076071 - MER5B DNA MER1_type 0 178 1 297 0 0 0 chr1 132117654 132117687 -150075977 + (CA)n Simple_repeat Simple_repeat 2 34 0 390 220 328 11 chr1 132118659 132118836 -150074828 + MIR SINE MIR 15 247 -15 295 246 78 84 chr1 132118871 132118980 -150074684 + L1ME LINE L1 5617 5726 -395 2767 79 42 0 chr1 132118980 132119360 -150074304 + L1PA11 LINE L1 5779 6174 0 295 246 78 84 chr1 132119360 132119441 -150074223 + L1ME LINE L1 5726 5806 -315 248 331 141 7 chr1 132119482 132119624 -150074040 + MIR SINE MIR 4 164 -98 1663 150 6 76 chr1 132119809 132120123 -150073541 + AluJo SINE Alu 1 292 -20 349 308 64 32 chr1 132120312 132120468 -150073196 + MIR SINE MIR 1 161 -101 * 808 237 121 10 chr1 132120457 132120664 -150073000 - MIR SINE MIR 0 262 33 21 36 0 0 chr1 132120756 132120784 -150072880 + AT_rich Low_complexity Low_complexity 1 28 0 225 290 75 75 chr1 132121687 132121873 -150071791 + L2 LINE L2 2330 2515 -799 * 879 256 63 0 chr1 132121848 132122055 -150071609 + MIR SINE MIR 39 258 -4 185 348 34 22 chr1 132122113 132122202 -150071462 + L2 LINE L2 2564 2653 -661 192 270 40 27 chr1 132122234 132122308 -150071356 + L2 LINE L2 2742 2816 -498 1822 189 112 9 chr1 132122582 132123001 -150070663 + MLT1C LTR MaLR 1 462 -5 1010 237 18 14 chr1 132123783 132124062 -150069602 - L1MA9 LINE L1 -38 6274 5995 2160 76 7 36 chr1 132124648 132124949 -150068715 - AluSg SINE Alu -18 292 1 24 0 0 0 chr1 132125671 132125695 -150067969 + AT_rich Low_complexity Low_complexity 1 24 0 330 179 0 24 chr1 132125935 132126019 -150067645 + L1MA6 LINE L1 6219 6300 0 2190 246 20 45 chr1 132126458 132126770 -150066894 + L2 LINE L2 2241 2532 -782 2175 113 10 13 chr1 132126770 132127055 -150066609 + AluSx SINE Alu 1 286 -26 294 73 0 0 chr1 132127055 132127096 -150066568 + (AAATG)n Simple_repeat Simple_repeat 2 42 0 2175 113 10 13 chr1 132127096 132127112 -150066552 + AluSx SINE Alu 286 301 -11 2190 246 20 45 chr1 132127112 132127397 -150066267 + L2 LINE L2 2532 2823 -491 581 217 130 77 chr1 132127460 132127667 -150065997 + MIR SINE MIR 40 257 -5 1061 269 119 22 chr1 132127675 132128087 -150065577 + L2 LINE L2 2862 3313 0 441 339 115 46 chr1 132128271 132128917 -150064747 + L2 LINE L2 569 1258 -2056 348 231 25 66 chr1 132128945 132129066 -150064598 - MIR SINE MIR -21 241 126 1778 113 24 34 chr1 132130248 132130540 -150063124 - AluSx SINE Alu -3 309 21 952 120 139 2 chr1 132131307 132131574 -150062090 + MLT1A1 LTR MaLR 12 365 0 1786 177 0 19 chr1 132131615 132131931 -150061733 + AluJo SINE Alu 1 310 -2 210 178 44 0 chr1 132132911 132132956 -150060708 - L2 LINE L2 0 3313 3267 271 111 19 19 chr1 132133384 132133438 -150060226 - L1MA10 LINE L1 -2 6332 6279 291 113 0 19 chr1 132133648 132133701 -150059963 - AluJo SINE Alu 0 301 250 216 122 0 0 chr1 132134456 132134497 -150059167 + (A)n Simple_repeat Simple_repeat 1 41 0 621 291 71 5 chr1 132135609 132135805 -150057859 + MIR SINE MIR 48 256 -6 485 75 0 12 chr1 132135831 132135911 -150057753 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1366 201 20 0 chr1 132135963 132136207 -150057457 - AluJo SINE Alu -63 249 1 189 0 0 0 chr1 132136217 132136238 -150057426 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr1 132136520 132136549 -150057115 + AT_rich Low_complexity Low_complexity 1 29 0 17842 144 45 7 chr1 132136737 132141108 -150052556 - L1PBa LINE L1 -2314 4548 5 525 233 159 40 chr1 132143299 132143475 -150050189 + MIR SINE MIR 33 229 -33 413 233 12 0 chr1 132143741 132143827 -150049837 + L2 LINE L2 3186 3272 -41 1141 337 171 15 chr1 132144318 132145184 -150048480 + L2 LINE L2 793 1793 -1521 11476 172 68 32 chr1 132145187 132145250 -150048414 + L1MC1 LINE L1 35 94 -6332 2192 117 3 0 chr1 132145250 132145548 -150048116 + AluSq SINE Alu 1 299 -14 11476 172 68 32 chr1 132145548 132148140 -150045524 + L1MC1 LINE L1 94 2787 -3639 4872 234 17 33 chr1 132148249 132149636 -150044028 + L1MC1 LINE L1 3057 4420 -2006 270 116 0 0 chr1 132149636 132149679 -150043985 + (TC)n Simple_repeat Simple_repeat 1 43 0 6243 168 36 5 chr1 132149783 132151190 -150042474 + L1MC1 LINE L1 5153 6613 0 2099 292 96 44 chr1 132151203 132151412 -150042252 + L2 LINE L2 1812 2009 -1263 2151 109 7 3 chr1 132151412 132151705 -150041959 - AluSx SINE Alu -18 294 1 2099 292 96 44 chr1 132151705 132152848 -150040816 + L2 LINE L2 2009 3270 -2 232 278 83 0 chr1 132152848 132152920 -150040744 + MIR SINE MIR 66 143 -65 36 0 0 0 chr1 132152939 132152975 -150040689 + AT_rich Low_complexity Low_complexity 1 36 0 763 192 0 8 chr1 132153215 132153345 -150040319 + FLAM_C SINE Alu 1 129 -14 68 60 0 0 chr1 132153345 132153462 -150040202 + AT_rich Low_complexity Low_complexity 1 117 0 196 136 15 30 chr1 132154100 132154166 -150039498 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 355 294 76 34 chr1 132155093 132155212 -150038452 + L2 LINE L2 3149 3272 0 36807 93 31 35 chr1 132205992 132212019 -149981645 + HERV9 LTR ERV1 20 4985 0 3775 91 4 13 chr1 132212019 132212553 -149981111 + HERV9 LTR ERV1 7505 8033 -366 191 296 14 0 chr1 132212702 132212773 -149980891 + MIR SINE MIR 121 192 -70 2143 138 0 0 chr1 132212800 132213111 -149980553 + AluSx SINE Alu 1 311 -1 466 317 87 11 chr1 132213384 132213589 -149980075 - MIR SINE MIR -45 217 4 337 301 35 9 chr1 132215204 132215317 -149978347 + MIR SINE MIR 26 141 -67 495 218 186 6 chr1 132217311 132217467 -149976197 + MIR SINE MIR 67 250 -12 390 271 156 0 chr1 132218531 132218653 -149975011 - MIR SINE MIR -58 204 64 259 297 71 26 chr1 132219029 132219184 -149974480 + L2 LINE L2 2590 2751 -563 245 235 0 78 chr1 132219187 132219289 -149974375 + L1ME LINE L1 5804 5897 -224 2268 97 13 0 chr1 132219317 132219615 -149974049 + AluSx SINE Alu 1 302 -10 582 276 88 13 chr1 132219749 132219977 -149973687 + L1MC4a LINE L1 5410 5654 -2154 1036 185 22 11 chr1 132219981 132220165 -149973499 + MER5A DNA MER1_type 4 189 0 248 296 72 48 chr1 132220645 132220770 -149972894 - MIR SINE MIR -113 149 22 181 231 31 62 chr1 132221001 132221066 -149972598 + L2 LINE L2 3133 3195 -77 711 221 86 75 chr1 132221235 132221619 -149972045 + L1MC4a LINE L1 6079 6466 -1342 1739 216 46 64 chr1 132221632 132222132 -149971532 + MLT1E2 LTR MaLR 3 493 -133 821 141 0 8 chr1 132222308 132222436 -149971228 - AluSq/x SINE Alu -185 127 1 1774 156 38 0 chr1 132222450 132222739 -149970925 + AluJb SINE Alu 1 300 -12 464 158 0 61 chr1 132222739 132222821 -149970843 - FLAM_A SINE Alu -29 113 37 1058 276 89 20 chr1 132223514 132223905 -149969759 + L1ME1 LINE L1 77 494 -5576 362 270 99 13 chr1 132223923 132224156 -149969508 + L1ME1 LINE L1 3266 3518 -2562 1651 238 15 10 chr1 132224222 132224617 -149969047 - L1M4 LINE L1 -1910 4236 3840 1951 152 10 0 chr1 132224620 132224929 -149968735 - AluSx SINE Alu 0 312 1 1791 116 37 0 chr1 132225191 132225459 -149968205 + AluSx SINE Alu 1 278 -34 180 0 0 0 chr1 132225460 132225480 -149968184 + (CA)n Simple_repeat Simple_repeat 1 20 0 3211 221 54 56 chr1 132225512 132226849 -149966815 + L1ME1 LINE L1 4766 6110 -2 23 33 0 0 chr1 132227362 132227392 -149966272 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr1 132227508 132227545 -149966119 + AT_rich Low_complexity Low_complexity 1 37 0 356 321 49 0 chr1 132227760 132227922 -149965742 + L1M4 LINE L1 3337 3506 -2640 1623 272 68 45 chr1 132227928 132228679 -149964985 + L1ME LINE L1 6 773 -5297 976 135 39 6 chr1 132228799 132228977 -149964687 + AluSg/x SINE Alu 120 303 -7 23 54 0 0 chr1 132230681 132230718 -149962946 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr1 132231494 132231522 -149962142 + AT_rich Low_complexity Low_complexity 1 28 0 676 217 0 16 chr1 132231815 132231944 -149961720 + FLAM_C SINE Alu 2 128 -5 2498 25 0 0 chr1 132231944 132232219 -149961445 + L1PA2 LINE L1 5881 6155 0 398 332 23 42 chr1 132232229 132232443 -149961221 - L1MC/D LINE L1 -1999 5809 5600 1750 191 43 9 chr1 132233668 132234014 -149959650 + MLT1B LTR MaLR 1 358 -32 1291 74 0 2 chr1 132234014 132234257 -149959407 - AluY SINE Alu -18 293 2 304 133 0 0 chr1 132234257 132234302 -149959362 + MLT1B LTR MaLR 346 390 0 2041 122 0 0 chr1 132234344 132234615 -149959049 + AluSx SINE Alu 19 289 -23 222 118 0 0 chr1 132234625 132234659 -149959005 + (CA)n Simple_repeat Simple_repeat 2 35 0 402 259 40 84 chr1 132234659 132234838 -149958826 + L1MC4a LINE L1 5650 5816 -1992 1602 166 39 7 chr1 132234838 132235121 -149958543 + AluJb SINE Alu 1 292 -20 402 259 40 84 chr1 132235121 132235192 -149958472 + L1MC4a LINE L1 5816 5889 -1919 1763 68 25 4 chr1 132235485 132235721 -149957943 - HERV17 LTR ERV1 -5647 2979 2739 10358 95 22 41 chr1 132235723 132237294 -149956370 - HERV17 LTR ERV1 -7086 1540 1 1919 101 54 23 chr1 132237294 132237754 -149955910 - LTR17 LTR ERV1 0 780 257 2126 146 4 55 chr1 132237754 132238244 -149955420 - L1M2 LINE L1 -726 5586 5118 253 139 0 0 chr1 132238244 132238280 -149955384 - U2 snRNA snRNA -152 36 1 2126 146 4 55 chr1 132238280 132238452 -149955212 - L1M2 LINE L1 -1194 5118 4939 * 5015 155 14 63 chr1 132238439 132238945 -149954719 - L1MA7 LINE L1 0 6291 5762 623 87 24 8 chr1 132238945 132239072 -149954592 + (TTATG)n Simple_repeat Simple_repeat 2 130 0 1761 152 7 14 chr1 132239072 132239361 -149954303 - AluJb SINE Alu -25 287 1 5015 155 14 63 chr1 132239361 132239898 -149953766 - L1MA7 LINE L1 -527 5764 5298 401 194 58 0 chr1 132239900 132240003 -149953661 - L1M LINE L1 -929 5362 5254 * 3740 145 106 13 chr1 132239972 132240756 -149952908 - L1MA7 LINE L1 -1133 5013 4157 5850 151 23 21 chr1 132240791 132242070 -149951594 - L1MA5 LINE L1 0 6300 5016 2847 140 2 95 chr1 132242069 132242189 -149951475 - L1MA7 LINE L1 -1969 4177 4047 * 2011 163 0 3 chr1 132242189 132242502 -149951162 - AluSx SINE Alu 0 312 1 2847 140 2 95 chr1 132242502 132242972 -149950692 - L1MA7 LINE L1 -2099 4047 3642 2198 119 7 0 chr1 132242972 132243275 -149950389 - AluSq SINE Alu -8 305 1 4550 245 26 48 chr1 132243283 132244787 -149948877 - L1MEc LINE L1 -4812 1584 114 1902 122 7 10 chr1 132244787 132245082 -149948582 - L1PA16 LINE L1 -4 6162 5869 4550 245 26 48 chr1 132245082 132245160 -149948504 - L1MEc LINE L1 -6282 114 36 1611 197 0 10 chr1 132245187 132245477 -149948187 - AluJo SINE Alu -24 288 2 4645 113 14 0 chr1 132245830 132246456 -149947208 - MER41B LTR ERV1 0 635 1 214 354 0 0 chr1 132246612 132246694 -149946970 - MIR SINE MIR -4 258 177 451 282 17 17 chr1 132246834 132246951 -149946713 - MIR SINE MIR -122 140 24 240 274 108 0 chr1 132248790 132248892 -149944772 + MIR SINE MIR 117 229 -33 908 216 20 41 chr1 132248892 132249031 -149944633 - MER69 DNA AcHobo 0 2526 2386 2101 107 0 27 chr1 132249031 132249329 -149944335 + AluSq SINE Alu 1 290 -23 185 0 0 39 chr1 132249333 132249359 -149944305 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 908 216 20 41 chr1 132249359 132249459 -149944205 - MER69 DNA AcHobo -143 2383 2287 21 57 0 0 chr1 132249475 132249510 -149944154 + AT_rich Low_complexity Low_complexity 1 35 0 204 154 53 35 chr1 132249510 132249679 -149943985 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 26 101 0 0 chr1 132249681 132249770 -149943894 + AT_rich Low_complexity Low_complexity 1 89 0 1029 211 37 0 chr1 132249771 132250017 -149943647 - MER69 DNA AcHobo -262 2264 2010 444 264 0 0 chr1 132250032 132250123 -149943541 - MER69 DNA AcHobo -676 550 460 293 204 0 0 chr1 132250338 132250387 -149943277 - MER69 DNA AcHobo -2294 232 184 5275 200 40 71 chr1 132252563 132253570 -149940094 + L1 LINE L1 2828 3768 -2378 813 100 0 0 chr1 132253570 132253680 -149939984 + AluY SINE Alu 195 304 -7 5275 200 40 71 chr1 132253680 132254637 -149939027 + L1 LINE L1 3768 4753 -1393 861 129 0 0 chr1 132254637 132254753 -149938911 + FLAM_C SINE Alu 1 116 -17 315 0 0 0 chr1 132254767 132254802 -149938862 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr1 132254984 132255005 -149938659 + AT_rich Low_complexity Low_complexity 1 21 0 1033 105 8 0 chr1 132255007 132255140 -149938524 - AluSq/x SINE Alu -177 135 2 2579 117 3 0 chr1 132255142 132255519 -149938145 - L1MA8 LINE L1 -342 5949 5572 2675 55 3 0 chr1 132255545 132255870 -149937794 - LTR17 LTR ERV1 -454 326 1 2365 64 15 0 chr1 132255870 132256169 -149937495 - HERV17 LTR ERV1 0 8626 6835 283 77 0 0 chr1 132256148 132256187 -149937477 - HERV17 LTR ERV1 -1078 7548 7510 * 20885 39 5 4 chr1 132256181 132258610 -149935054 - HERV17 LTR ERV1 -2608 6018 3586 1488 183 0 35 chr1 132258610 132258948 -149934716 + pTR5 LTR ERV1 743 1068 -1370 296 191 12 95 chr1 132259090 132259174 -149934490 + MLT1E2 LTR MaLR 534 610 -16 1517 160 60 81 chr1 132259174 132259543 -149934121 - MLT1B LTR MaLR -2 388 28 2892 219 82 98 chr1 132259545 132260240 -149933424 + L1MC4 LINE L1 6611 7315 -727 2342 93 3 3 chr1 132260240 132260542 -149933122 - AluSp SINE Alu -11 302 1 2892 219 82 98 chr1 132260542 132260810 -149932854 + L1MC4 LINE L1 7315 7586 -456 2301 102 3 0 chr1 132260810 132261115 -149932549 + AluSq SINE Alu 1 306 -7 2892 219 82 98 chr1 132261115 132261151 -149932513 + L1MC4 LINE L1 7586 7621 -421 1640 169 45 21 chr1 132261151 132261482 -149932182 + L1MA7 LINE L1 5953 6291 0 2892 219 82 98 chr1 132261482 132261504 -149932160 + L1MC4 LINE L1 7621 7642 -400 2035 146 0 0 chr1 132261504 132261806 -149931858 + AluSx SINE Alu 3 304 -8 2892 219 82 98 chr1 132261806 132262091 -149931573 + L1MC4 LINE L1 7642 7900 -142 376 228 82 88 chr1 132262104 132262195 -149931469 - MER63A DNA MER1_type -1492 196 105 2264 95 3 0 chr1 132262195 132262490 -149931174 + AluY SINE Alu 1 296 -15 376 228 82 88 chr1 132262490 132262569 -149931095 - MER63A DNA MER1_type -1583 105 27 218 319 11 11 chr1 132263103 132263194 -149930470 + CT-rich Low_complexity Low_complexity 3 93 0 1773 150 17 30 chr1 132263385 132263685 -149929979 - AluJb SINE Alu -16 296 1 1921 150 0 0 chr1 132263770 132264056 -149929608 + AluSx SINE Alu 13 298 -14 282 217 0 29 chr1 132264121 132264190 -149929474 + CT-rich Low_complexity Low_complexity 3 69 0 201 39 0 0 chr1 132265497 132265523 -149928141 + (TA)n Simple_repeat Simple_repeat 1 26 0 507 222 134 12 chr1 132265527 132265698 -149927966 - MIR SINE MIR -57 205 14 21 36 0 0 chr1 132266171 132266199 -149927465 + AT_rich Low_complexity Low_complexity 1 28 0 527 220 117 110 chr1 132267333 132267606 -149926058 + MER102b DNA MER1_type 65 339 -2 238 407 0 0 chr1 132268161 132268242 -149925422 + MIR SINE MIR 21 101 -161 1700 134 11 4 chr1 132268425 132268686 -149924978 + AluY SINE Alu 43 305 -6 814 265 128 25 chr1 132268806 132269206 -149924458 + L1ME4a LINE L1 5483 5933 -188 2338 66 40 17 chr1 132269206 132269508 -149924156 + AluY SINE Alu 1 309 -2 814 265 128 25 chr1 132269508 132269544 -149924120 + L1ME4a LINE L1 5933 5964 -157 308 271 0 42 chr1 132269557 132269653 -149924011 - L1MC4 LINE L1 -1337 6705 6614 27 29 0 0 chr1 132269832 132269866 -149923798 + AT_rich Low_complexity Low_complexity 1 34 0 2109 130 0 13 chr1 132269874 132270190 -149923474 + AluSx SINE Alu 1 312 0 208 143 0 0 chr1 132272463 132272498 -149921166 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 196 250 0 0 chr1 132272955 132272999 -149920665 - L2 LINE L2 -35 3237 3194 23 0 0 0 chr1 132273120 132273143 -149920521 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr1 132273239 132273262 -149920402 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2108 163 49 31 chr1 132273320 132273864 -149919800 + MLT2A2 LTR ERVL 1 554 0 618 276 192 15 chr1 132273864 132274200 -149919464 + L1ME LINE L1 5361 5756 -365 1451 136 0 18 chr1 132274322 132274543 -149919121 - AluSg/x SINE Alu -23 289 73 649 118 17 17 chr1 132274555 132274674 -149918990 + T-rich Low_complexity Low_complexity 4 122 0 522 83 0 0 chr1 132274693 132274765 -149918899 + (CCCTG)n Simple_repeat Simple_repeat 4 75 0 2081 129 17 0 chr1 132274773 132275075 -149918589 - AluSq SINE Alu -6 307 1 26 30 0 0 chr1 132275161 132275194 -149918470 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr1 132275353 132275380 -149918284 + AT_rich Low_complexity Low_complexity 1 27 0 261 316 129 67 chr1 132275575 132275800 -149917864 - L2 LINE L2 -359 2955 2717 265 396 29 7 chr1 132276182 132276321 -149917343 - L2 LINE L2 -188 3084 2943 450 134 0 124 chr1 132276449 132276504 -149917160 + MSTB LTR MaLR 1 41 -385 2350 100 0 0 chr1 132276504 132276805 -149916859 + AluY SINE Alu 1 301 -10 450 134 0 124 chr1 132276805 132276846 -149916818 + MSTB LTR MaLR 41 85 -341 1332 148 52 44 chr1 132276994 132277236 -149916428 + MSTB LTR MaLR 111 357 -69 2472 76 0 0 chr1 132277236 132277539 -149916125 - AluY SINE Alu -8 303 1 1332 148 52 44 chr1 132277539 132277566 -149916098 + MSTB LTR MaLR 357 382 -44 556 163 33 0 chr1 132277566 132277658 -149916006 + U13 snRNA snRNA 1 95 -9 286 176 39 0 chr1 132277680 132277731 -149915933 + MSTB LTR MaLR 376 428 0 323 298 92 52 chr1 132277746 132278018 -149915646 - L2 LINE L2 -528 2786 2504 497 254 86 64 chr1 132278035 132278250 -149915414 - MIR SINE MIR -36 226 13 1688 211 82 49 chr1 132278470 132278957 -149914707 - MLT1D LTR MaLR 0 505 3 229 333 0 0 chr1 132279913 132279982 -149913682 - tRNA-Ile-ATT tRNA tRNA -2 75 7 1045 162 152 48 chr1 132280459 132280756 -149912908 - MER33 DNA MER1_type -5 319 1 181 271 43 29 chr1 132281096 132281166 -149912498 + MIR SINE MIR 13 83 -179 193 360 93 23 chr1 132282284 132282498 -149911166 + L2 LINE L2 2701 2929 -385 4332 78 5 0 chr1 132282834 132283388 -149910276 + HERV17 LTR ERV1 3032 3588 -5038 7400 103 70 64 chr1 132283398 132285305 -149908359 - pTR5 LTR ERV1 0 8399 504 240 163 0 0 chr1 132285411 132285454 -149908210 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 231 152 0 0 chr1 132285458 132285504 -149908160 - LTR66 LTR ERVL -171 439 394 244 229 24 0 chr1 132285511 132285594 -149908070 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 7409 58 7 3 chr1 132285599 132287002 -149906662 + L1PA7 LINE L1 4742 6150 -4 3661 159 30 11 chr1 132287172 132287808 -149905856 - L1PB4 LINE L1 -6 6150 5503 593 230 174 46 chr1 132288827 132289231 -149904433 + MLT1J LTR MaLR 1 499 -12 208 277 48 48 chr1 132290924 132291007 -149902657 - L3b LINE CR1 -385 1198 1116 353 303 39 53 chr1 132291477 132291685 -149901979 - L1MC4a LINE L1 -1873 5935 5731 189 0 0 0 chr1 132291699 132291720 -149901944 + (TG)n Simple_repeat Simple_repeat 2 22 0 330 246 18 18 chr1 132291961 132292075 -149901589 + (TA)n Simple_repeat Simple_repeat 1 114 0 2954 226 67 20 chr1 132292152 132292914 -149900750 - L1MEc LINE L1 -5541 855 58 309 304 99 24 chr1 132292916 132293209 -149900455 - L1MC4a LINE L1 -1095 5051 4737 305 275 12 0 chr1 132293764 132293844 -149899820 + L2 LINE L2 3233 3313 0 277 146 0 0 chr1 132294070 132294118 -149899546 - AluSp SINE Alu -7 296 249 1467 116 5 0 chr1 132294118 132294317 -149899347 - AluSp SINE Alu -113 200 1 277 302 132 0 chr1 132295615 132295744 -149897920 + MIR3 SINE MIR 35 180 -28 403 346 19 13 chr1 132295935 132296091 -149897573 + MIR SINE MIR 2 158 -104 808 289 136 53 chr1 132296102 132296572 -149897092 - LTR67 LTR ERVL -13 544 36 29 70 0 0 chr1 132296752 132296809 -149896855 + AT_rich Low_complexity Low_complexity 1 57 0 8540 82 19 0 chr1 132296813 132298718 -149894946 + L1PA8 LINE L1 4144 6080 -92 22 0 0 0 chr1 132298718 132298740 -149894924 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 132298759 132298786 -149894878 + AT_rich Low_complexity Low_complexity 1 27 0 2167 118 0 0 chr1 132298786 132299075 -149894589 - AluSx SINE Alu -23 289 1 445 250 61 0 chr1 132299093 132299241 -149894423 - L1ME4a LINE L1 -248 5873 5717 8097 164 22 25 chr1 132299282 132300747 -149892917 - L1P LINE L1 -4675 1471 11 2071 142 0 19 chr1 132300837 132301155 -149892509 - AluSx SINE Alu 0 312 1 572 276 83 45 chr1 132301155 132301544 -149892120 - L1ME4a LINE L1 -460 5661 5256 812 196 164 0 chr1 132301578 132301797 -149891867 - L1ME3 LINE L1 0 6162 5908 460 214 10 0 chr1 132301855 132301953 -149891711 + MIR SINE MIR 107 205 -57 276 30 0 0 chr1 132302157 132302190 -149891474 + (TG)n Simple_repeat Simple_repeat 2 34 0 221 364 54 8 chr1 132302446 132302575 -149891089 + L2 LINE L2 2751 2885 -429 211 259 204 54 chr1 132302714 132302861 -149890803 + L2 LINE L2 3143 3311 -2 32 43 0 0 chr1 132303876 132303922 -149889742 + AT_rich Low_complexity Low_complexity 1 46 0 279 207 74 59 chr1 132303970 132304105 -149889559 - L1ME2 LINE L1 -67 6097 5961 467 303 0 25 chr1 132304192 132304354 -149889310 - L1MC5 LINE L1 -435 7526 7369 398 259 15 30 chr1 132305355 132305490 -149888174 - L1MC5 LINE L1 -868 7093 6961 3712 157 13 14 chr1 132305525 132306162 -149887502 - L1MB1 LINE L1 -1 6167 5532 3839 201 26 14 chr1 132306876 132307688 -149885976 - L1MB7 LINE L1 -16 6168 5347 1419 135 0 5 chr1 132308449 132308656 -149885008 + AluSp SINE Alu 76 281 -32 180 263 18 35 chr1 132308726 132308783 -149884881 - L2 LINE L2 0 3272 3217 269 311 185 0 chr1 132310018 132310137 -149883527 + MIR3 SINE MIR 65 205 -3 340 358 22 7 chr1 132311634 132311771 -149881893 - MIR3 SINE MIR -53 155 17 385 309 7 67 chr1 132312263 132312412 -149881252 - MIR3 SINE MIR -23 185 46 208 286 71 54 chr1 132313813 132313925 -149879739 - MER5A DNA MER1_type -71 118 5 1991 136 3 10 chr1 132315568 132315869 -149877795 - AluSx SINE Alu -13 299 1 192 250 0 50 chr1 132316159 132316219 -149877445 + L3 LINE CR1 520 576 -1001 25 0 0 0 chr1 132316575 132316600 -149877064 + AT_rich Low_complexity Low_complexity 1 25 0 187 365 48 30 chr1 132316914 132317081 -149876583 - L2 LINE L2 -177 3095 2926 2720 246 86 28 chr1 132317366 132318246 -149875418 + L1ME3A LINE L1 4060 4887 -1283 2052 120 0 49 chr1 132318246 132318572 -149875092 + AluSx SINE Alu 1 310 -2 2720 246 86 28 chr1 132318572 132319608 -149874056 + L1ME3A LINE L1 4887 6094 -76 340 253 11 11 chr1 132320953 132321040 -149872624 - MER5B DNA MER1_type -2 176 90 1590 220 7 46 chr1 132322350 132322763 -149870901 - MLT2C1 LTR ERVL 0 397 1 1700 164 19 35 chr1 132322763 132323075 -149870589 + AluJo SINE Alu 1 307 -5 399 289 124 0 chr1 132323253 132323374 -149870290 - L2 LINE L2 0 3272 3137 197 316 72 101 chr1 132324328 132324606 -149869058 + L2 LINE L2 2957 3226 -46 207 250 0 0 chr1 132325105 132325145 -149868519 + L2 LINE L2 3264 3303 -10 953 226 28 36 chr1 132326751 132326999 -149866665 + MER102a DNA MER1_type 77 322 -8 457 311 0 8 chr1 132327153 132327275 -149866389 + L2 LINE L2 3142 3262 -10 21 36 0 0 chr1 132328508 132328536 -149865128 + AT_rich Low_complexity Low_complexity 1 28 0 338 307 0 0 chr1 132328622 132328710 -149864954 - MER117 DNA MER1_type -3 194 107 281 280 17 34 chr1 132328805 132328923 -149864741 + MER114 LTR ERV 533 648 0 232 191 73 29 chr1 132329319 132329387 -149864277 - MIR SINE MIR -73 189 119 189 0 0 0 chr1 132330865 132330886 -149862778 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 4025 133 27 2 chr1 132331131 132331719 -149861945 + LTR26 LTR ERV1 1 603 0 1977 122 10 10 chr1 132331993 132332288 -149861376 - AluSx SINE Alu -17 295 1 700 323 43 4 chr1 132333009 132333288 -149860376 - L3 LINE CR1 -97 1480 1191 788 282 124 62 chr1 132333602 132334145 -149859519 - L2 LINE L2 -1 3312 2741 743 138 46 0 chr1 132334166 132334275 -149859389 + FLAM_C SINE Alu 11 124 -19 1879 167 3 7 chr1 132334311 132334611 -149859053 + AluJo SINE Alu 3 301 -11 263 271 59 34 chr1 132334829 132334947 -149858717 - MIR SINE MIR -96 166 46 2844 81 14 11 chr1 132334971 132335341 -149858323 + THE1C LTR MaLR 1 371 -4 2359 78 0 0 chr1 132335421 132335705 -149857959 + AluSg SINE Alu 1 284 -26 1007 139 37 94 chr1 132335908 132336152 -149857512 - L1MA10 LINE L1 -60 6274 6045 630 62 0 0 chr1 132336152 132336232 -149857432 + L1MA10 LINE L1 6255 6334 0 1999 144 3 7 chr1 132336336 132336634 -149857030 + AluSx SINE Alu 1 297 -15 442 209 15 8 chr1 132337813 132337947 -149855717 + CT-rich Low_complexity Low_complexity 1 135 0 413 326 21 0 chr1 132338395 132338539 -149855125 - MIR SINE MIR -16 246 100 2935 94 23 0 chr1 132338539 132338933 -149854731 + MLT2A1 LTR ERVL 1 403 -41 279 54 0 0 chr1 132338969 132339006 -149854658 + MLT2A1 LTR ERVL 399 435 -18 2340 84 0 16 chr1 132341716 132342025 -149851639 - AluY SINE Alu -7 304 1 273 245 64 32 chr1 132342409 132342503 -149851161 + MIR SINE MIR 45 141 -67 725 211 4 0 chr1 132342712 132342916 -149850748 + (CCTAT)n Simple_repeat Simple_repeat 1 269 -59 453 81 0 0 chr1 132342916 132342978 -149850686 + (CAGCC)n Simple_repeat Simple_repeat 4 65 0 725 211 4 0 chr1 132342978 132343039 -149850625 + (CCTAT)n Simple_repeat Simple_repeat 269 328 0 187 240 173 0 chr1 132343263 132343338 -149850326 - MIR SINE MIR 0 262 175 226 257 72 66 chr1 132343599 132343751 -149849913 + HAL1 LINE L1 1441 1593 -914 770 110 0 18 chr1 132344243 132344352 -149849312 - AluSg/x SINE Alu 0 309 203 198 281 193 0 chr1 132344740 132344797 -149848867 - L2 LINE L2 -41 3231 3164 991 266 151 27 chr1 132344861 132345305 -149848359 + MLT1G1 LTR MaLR 97 595 0 609 181 60 54 chr1 132346069 132346218 -149847446 + MER69 DNA AcHobo 1 150 -2376 407 130 0 14 chr1 132346220 132346289 -149847375 + MER69 DNA AcHobo 2457 2524 -2 1698 253 10 26 chr1 132347834 132348336 -149845328 + L1MA9 LINE L1 5775 6274 -38 324 0 0 0 chr1 132349047 132349083 -149844581 + (CA)n Simple_repeat Simple_repeat 2 37 0 329 250 14 100 chr1 132349976 132350116 -149843548 - MIR SINE MIR -31 231 104 2554 52 13 0 chr1 132350166 132350473 -149843191 + AluY SINE Alu 1 311 0 3390 210 46 27 chr1 132350575 132351043 -149842621 - L1ME1 LINE L1 -3 6163 5705 2192 125 16 0 chr1 132351043 132351346 -149842318 - AluSx SINE Alu -4 308 1 3390 210 46 27 chr1 132351346 132352264 -149841400 - L1ME1 LINE L1 -461 5705 4756 660 113 0 167 chr1 132352264 132352414 -149841250 + MLT2C1 LTR ERVL 1 125 -272 1905 18 5 14 chr1 132352414 132352632 -149841032 - L1PA5 LINE L1 -5 6149 5934 1290 21 0 0 chr1 132352632 132352777 -149840887 + L1PA4 LINE L1 5753 5897 -258 1413 133 40 97 chr1 132352777 132353006 -149840658 + MLT2C1 LTR ERVL 115 325 -72 414 0 0 0 chr1 132353006 132353052 -149840612 + (CA)n Simple_repeat Simple_repeat 2 47 0 1413 133 40 97 chr1 132353052 132353122 -149840542 + MLT2C1 LTR ERVL 325 397 0 317 200 0 0 chr1 132353122 132353187 -149840477 - L1ME1 LINE L1 -1386 4760 4696 475 317 55 72 chr1 132353637 132353927 -149839737 - MLT1K LTR MaLR -159 429 145 519 276 31 12 chr1 132355169 132355332 -149838332 + MLT1I LTR MaLR 244 409 0 1852 142 28 10 chr1 132356628 132356917 -149836747 + AluSx SINE Alu 2 295 -17 615 300 50 61 chr1 132357154 132357531 -149836133 + MLT1I LTR MaLR 37 409 0 193 269 90 13 chr1 132357540 132357618 -149836046 - MIR SINE MIR -167 95 12 2294 72 6 31 chr1 132358847 132359166 -149834498 - AluY SINE Alu 0 311 1 199 196 118 0 chr1 132359225 132359276 -149834388 + MER5B DNA MER1_type 122 178 0 227 237 17 0 chr1 132359312 132359371 -149834293 + MER5A DNA MER1_type 99 158 -31 300 261 126 17 chr1 132360348 132360467 -149833197 + MIR SINE MIR 120 251 -11 188 243 0 0 chr1 132360435 132360472 -149833192 + L2 LINE L2 3265 3301 -12 * 312 79 0 0 chr1 132360667 132360705 -149832959 + U2 snRNA snRNA 1 38 -150 181 286 19 29 chr1 132361300 132361405 -149832259 + L2 LINE L2 2128 2231 -1083 865 249 40 86 chr1 132361454 132361803 -149831861 + MLT1I LTR MaLR 71 403 -6 821 172 33 4 chr1 132362815 132363064 -149830600 + CT-rich Low_complexity Low_complexity 1 256 0 740 253 4 64 chr1 132363065 132363314 -149830350 + MIR SINE MIR 29 262 0 455 278 75 11 chr1 132364008 132364195 -149829469 + MIR SINE MIR 15 213 -49 784 219 67 49 chr1 132364543 132364941 -149828723 - MLT2B1 LTR ERVL 0 535 124 289 340 121 0 chr1 132365233 132365374 -149828290 - MIR3 SINE MIR -34 174 17 194 285 192 8 chr1 132365611 132365741 -149827923 - L2 LINE L2 0 3313 3160 917 140 62 0 chr1 132366694 132366872 -149826792 - MER53 DNA DNA 0 189 1 315 0 0 0 chr1 132366883 132366918 -149826746 + (TG)n Simple_repeat Simple_repeat 2 36 0 1428 170 4 21 chr1 132367111 132367352 -149826312 + AluJo SINE Alu 40 276 -36 191 330 188 0 chr1 132367527 132367639 -149826025 + MIR SINE MIR 18 150 -112 23 86 0 0 chr1 132367656 132367714 -149825950 + AT_rich Low_complexity Low_complexity 1 58 0 216 252 28 126 chr1 132367802 132367945 -149825719 - MIR SINE MIR -78 184 56 368 216 266 38 chr1 132367989 132368121 -149825543 + MER20B DNA MER1_type 1 160 -59 287 188 75 38 chr1 132368159 132368239 -149825425 - MIR3 SINE MIR -51 157 75 3389 158 83 2 chr1 132368339 132368926 -149824738 + MER41B LTR ERV1 1 635 0 361 286 77 25 chr1 132369386 132369582 -149824082 - MIR SINE MIR -26 236 31 183 255 20 0 chr1 132370328 132370379 -149823285 - L2 LINE L2 -472 2842 2791 519 259 59 18 chr1 132371314 132371484 -149822180 - MIR SINE MIR -62 200 24 2567 29 0 29 chr1 132371631 132371938 -149821726 + AluY SINE Alu 1 298 -13 288 308 100 0 chr1 132374293 132374413 -149819251 - MER91A DNA MER1_type 0 196 65 274 272 88 8 chr1 132374546 132374671 -149818993 + MIR SINE MIR 56 190 -72 223 287 130 9 chr1 132375526 132375641 -149818023 + MIR SINE MIR 8 136 -126 1151 176 33 5 chr1 132376276 132376486 -149817178 - MER58A DNA MER1_type -8 216 1 1391 186 71 17 chr1 132376489 132376784 -149816880 - MER65A LTR ERV1 0 445 135 678 106 32 0 chr1 132376784 132376878 -149816786 - U1 snRNA snRNA -68 97 1 * 700 153 34 0 chr1 132376877 132376995 -149816669 - MER65B LTR ERV1 -409 122 1 248 255 191 0 chr1 132378847 132378941 -149814723 + MIR SINE MIR 39 150 -58 4820 124 44 69 chr1 132378941 132380143 -149813521 + pTR5 LTR ERV1 751 2225 -213 2669 30 0 7 chr1 132380143 132380444 -149813220 + AluY SINE Alu 1 299 -12 4820 124 44 69 chr1 132380444 132380653 -149813011 + pTR5 LTR ERV1 2225 2438 0 186 291 36 0 chr1 132380655 132380710 -149812954 + MIR3 SINE MIR 139 195 -13 181 229 93 93 chr1 132380839 132380979 -149812685 + MIR3 SINE MIR 1 140 -68 616 287 82 33 chr1 132381122 132381366 -149812298 + MIR SINE MIR 1 256 -6 208 307 24 41 chr1 132382108 132382240 -149811424 - MIR SINE MIR -63 145 28 1634 192 24 40 chr1 132383388 132383768 -149809896 - MLT1A2 LTR MaLR 0 374 1 183 291 0 0 chr1 132383838 132383893 -149809771 + MIR SINE MIR 181 235 -27 302 294 45 73 chr1 132384144 132384321 -149809343 - MIR SINE MIR -71 191 20 1805 167 0 14 chr1 132385543 132385830 -149807834 + AluSx SINE Alu 3 285 -27 185 274 68 60 chr1 132385971 132386088 -149807576 - MIR SINE MIR -26 236 119 2794 133 73 11 chr1 132386224 132386690 -149806974 + LTR36 LTR ERV1 86 580 -31 3212 164 28 76 chr1 132387122 132387848 -149805816 - LTR8 LTR ERV1 0 691 1 1721 156 11 52 chr1 132388110 132388469 -149805195 - MER4A LTR ERV1 -1 663 261 236 136 45 23 chr1 132388469 132388513 -149805151 - MER4A LTR ERV1 -566 98 54 9101 93 75 15 chr1 132388541 132389206 -149804458 - MER4A-int LTR ERV1 0 6598 5974 495 118 0 0 chr1 132389206 132389282 -149804382 + (TA)n Simple_repeat Simple_repeat 1 76 0 9101 93 75 15 chr1 132389282 132390050 -149803614 - MER4A-int LTR ERV1 -624 5974 5079 1057 76 21 0 chr1 132390051 132390195 -149803469 - AluYa5 SINE Alu -12 299 153 7325 94 35 25 chr1 132390199 132391358 -149802306 - MER4A-int LTR ERV1 -1511 5087 3918 2742 124 53 21 chr1 132391361 132391925 -149801739 - MER4A-int LTR ERV1 -3278 3320 2739 1087 194 93 8 chr1 132391927 132392164 -149801500 + LTR8 LTR ERV1 1 257 -434 4291 75 63 2 chr1 132392164 132392801 -149800863 - MER4A-int LTR ERV1 -4103 2495 1820 5731 118 91 14 chr1 132392804 132393748 -149799916 - MER4A-int LTR ERV1 -5574 1184 194 3283 63 176 41 chr1 132393715 132394254 -149799410 - MER4A-int LTR ERV1 -5986 612 1 * 1671 162 6 24 chr1 132394257 132394609 -149799055 - MER4A LTR ERV1 0 664 261 2314 151 20 8 chr1 132394888 132395286 -149798378 - MER57A LTR ERV1 0 403 1 3134 99 19 0 chr1 132395589 132396015 -149797649 + MER57B LTR ERV1 1 434 0 599 219 19 132 chr1 132396124 132396198 -149797466 + MLT1H LTR MaLR 29 110 -439 1920 168 3 0 chr1 132396198 132396483 -149797181 + AluJo SINE Alu 1 286 -26 599 219 19 132 chr1 132396483 132396613 -149797051 + MLT1H LTR MaLR 110 210 -339 260 245 96 85 chr1 132396660 132396848 -149796816 + MLT1H LTR MaLR 348 537 -12 1512 194 35 0 chr1 132397341 132397599 -149796065 + Tigger7 DNA MER2_type 1 267 -466 634 170 0 10 chr1 132397596 132397696 -149795968 + Tigger7 DNA MER2_type 2389 2487 0 * 2336 113 0 0 chr1 132398634 132398944 -149794720 - AluSx SINE Alu -2 310 1 393 116 0 0 chr1 132399289 132399358 -149794306 + (TG)n Simple_repeat Simple_repeat 2 70 0 931 235 34 8 chr1 132400658 132400896 -149792768 - L2 LINE L2 -1156 2158 1915 1578 216 3 13 chr1 132401132 132401447 -149792217 - AluJb SINE Alu 0 312 1 700 261 109 113 chr1 132401686 132401871 -149791793 - MLT1L LTR MaLR -14 601 417 4794 44 5 15 chr1 132401871 132402466 -149791198 - LTR10C LTR ERV1 0 591 3 700 261 109 113 chr1 132402466 132402808 -149790856 - MLT1L LTR MaLR -198 417 74 2162 107 21 0 chr1 132402808 132403099 -149790565 + AluY SINE Alu 1 297 -14 700 261 109 113 chr1 132403099 132403148 -149790516 - MLT1L LTR MaLR -541 74 26 528 321 24 0 chr1 132403419 132403584 -149790080 - MIR SINE MIR -29 233 65 213 255 0 0 chr1 132404361 132404408 -149789256 + L2 LINE L2 3222 3268 -4 366 191 29 0 chr1 132404629 132404697 -149788967 + tRNA-Met-i tRNA tRNA 2 71 -4 401 258 68 15 chr1 132404928 132405060 -149788604 + MIR SINE MIR 67 205 -57 823 120 0 0 chr1 132405174 132405291 -149788373 - MER47A DNA MER2_type -187 179 63 796 222 75 26 chr1 132405352 132405479 -149788185 - MER20B DNA MER1_type 0 783 664 2188 114 3 0 chr1 132405479 132405768 -149787896 + AluSc SINE Alu 1 290 -19 796 222 75 26 chr1 132405768 132405906 -149787758 - MER20B DNA MER1_type -119 664 505 1467 193 0 18 chr1 132405938 132406212 -149787452 + AluJb SINE Alu 18 286 -26 236 336 115 8 chr1 132406847 132406969 -149786695 - MIR SINE MIR -24 238 104 1651 243 84 40 chr1 132407793 132408423 -149785241 + L1ME2 LINE L1 5507 6164 0 6158 118 38 4 chr1 132408526 132409429 -149784235 - THE1A-int LTR MaLR -646 934 2 2160 79 14 10 chr1 132409430 132409722 -149783942 - THE1A LTR MaLR 0 355 63 308 67 22 0 chr1 132409727 132409772 -149783892 - MADE1 DNA Mariner 0 80 35 538 48 0 0 chr1 132409791 132409854 -149783810 - THE1A LTR MaLR -292 63 1 398 309 219 4 chr1 132410218 132410371 -149783293 - L2 LINE L2 -11 3261 3142 303 28 0 0 chr1 132410371 132410407 -149783257 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 306 0 0 0 chr1 132410406 132410440 -149783224 + (CA)n Simple_repeat Simple_repeat 1 34 0 398 309 219 4 chr1 132410407 132410564 -149783100 - L2 LINE L2 -130 3142 2924 405 262 364 0 chr1 132410946 132411133 -149782531 + MIR SINE MIR 8 262 0 186 194 69 56 chr1 132411142 132411214 -149782450 - MIR SINE MIR -3 259 187 300 89 22 0 chr1 132411954 132411999 -149781665 + MADE1 DNA Mariner 35 80 0 319 258 245 6 chr1 132412663 132412822 -149780842 - MIR SINE MIR -51 211 15 407 236 230 31 chr1 132413240 132413401 -149780263 + MIR SINE MIR 48 240 -22 345 164 15 0 chr1 132414815 132414882 -149778782 + L1M4 LINE L1 4757 4824 -1322 208 250 130 22 chr1 132414928 132415020 -149778644 - MIR SINE MIR -44 218 117 283 310 70 50 chr1 132415167 132415267 -149778397 + L2 LINE L2 3134 3235 -37 393 318 55 62 chr1 132415278 132415586 -149778078 - MLT1I LTR MaLR -20 389 84 272 350 34 8 chr1 132415812 132415929 -149777735 - MIR SINE MIR -14 248 129 224 366 79 0 chr1 132416538 132416639 -149777025 + MIR SINE MIR 38 146 -62 187 176 0 0 chr1 132416857 132416891 -149776773 + MIR3 SINE MIR 164 197 -11 504 290 84 23 chr1 132416935 132417149 -149776515 + MIR SINE MIR 36 262 0 198 333 133 11 chr1 132418733 132418823 -149774841 + MIR SINE MIR 18 118 -90 220 256 0 33 chr1 132420467 132420557 -149773107 + A-rich Low_complexity Low_complexity 4 90 0 27 29 0 0 chr1 132420764 132420798 -149772866 + AT_rich Low_complexity Low_complexity 1 34 0 2648 112 8 11 chr1 132420955 132421320 -149772344 - THE1B LTR MaLR 0 364 1 11557 99 19 32 chr1 132421321 132422920 -149770744 - THE1B-int LTR MaLR -1 1579 1 1304 150 19 5 chr1 132422920 132423127 -149770537 - THE1B LTR MaLR 0 364 155 1849 123 0 0 chr1 132423127 132423370 -149770294 + AluSx SINE Alu 1 243 -69 429 135 40 0 chr1 132423530 132423604 -149770060 + Alu SINE Alu 225 301 -10 1160 110 6 0 chr1 132423605 132423768 -149769896 - THE1B LTR MaLR -200 164 1 210 309 15 0 chr1 132423769 132423837 -149769827 + MIR SINE MIR 86 154 -108 191 284 30 15 chr1 132424218 132424285 -149769379 - L2 LINE L2 -4 3268 3201 2666 187 74 8 chr1 132424288 132424812 -149768852 - MER68 LTR ERV1 0 562 4 1819 216 15 6 chr1 132427044 132427378 -149766286 + MER58B DNA MER1_type 5 341 0 280 312 138 0 chr1 132427453 132427591 -149766073 - MIR SINE MIR -40 222 66 249 33 0 0 chr1 132428976 132429006 -149764658 + (CCA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr1 132429005 132429028 -149764636 + (TAA)n Simple_repeat Simple_repeat 2 24 0 * 386 240 182 0 chr1 132429562 132429683 -149763981 - MIR SINE MIR -64 198 56 333 241 165 23 chr1 132430470 132430603 -149763061 - L2 LINE L2 0 3313 3162 222 414 48 7 chr1 132431281 132431426 -149762238 + L2 LINE L2 3082 3232 -40 1516 155 54 34 chr1 132431531 132431848 -149761816 - AluJo SINE Alu 0 312 1 182 103 0 26 chr1 132432199 132432238 -149761426 + (TG)n Simple_repeat Simple_repeat 2 39 0 381 359 53 10 chr1 132432332 132432541 -149761123 - MIR SINE MIR -15 247 30 279 289 205 0 chr1 132432822 132433071 -149760593 - L1ME4a LINE L1 -12 6109 5810 300 309 110 15 chr1 132433092 132433228 -149760436 - L1ME4a LINE L1 -2037 5771 5623 6090 149 16 2 chr1 132434127 132434480 -149759184 - L1PB1 LINE L1 -5 6146 5799 279 0 0 0 chr1 132434480 132434511 -149759153 + (TA)n Simple_repeat Simple_repeat 2 32 0 6090 149 16 2 chr1 132434511 132435531 -149758133 - L1PB1 LINE L1 -352 5799 4753 2033 127 27 0 chr1 132435599 132435891 -149757773 - AluSq SINE Alu -13 300 1 233 231 19 0 chr1 132436206 132436258 -149757406 - MER96B DNA MER1_type? -23 394 342 614 296 42 29 chr1 132439611 132439851 -149753813 + MIR SINE MIR 13 255 -7 294 148 0 0 chr1 132439868 132439922 -149753742 + (TA)n Simple_repeat Simple_repeat 1 54 0 327 253 22 22 chr1 132439931 132440022 -149753642 - L1MC4 LINE L1 -1339 6703 6613 204 333 36 36 chr1 132440175 132440259 -149753405 + L2 LINE L2 3101 3184 -88 210 208 38 0 chr1 132440308 132440361 -149753303 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 1228 199 70 66 chr1 132440475 132440776 -149752888 + AluJb SINE Alu 1 302 0 705 324 104 19 chr1 132440819 132441459 -149752205 + L2 LINE L2 2619 3313 0 1282 200 68 59 chr1 132442619 132442974 -149750690 - MLT1A1 LTR MaLR -4 361 4 1657 149 14 0 chr1 132444392 132444674 -149748990 + L1MC1 LINE L1 5307 5592 -752 225 0 0 0 chr1 132444675 132444700 -149748964 + (TTA)n Simple_repeat Simple_repeat 3 27 0 27907 41 5 0 chr1 132444700 132448815 -149744849 - L1PA4 LINE L1 -18 6137 2008 4037 172 40 12 chr1 132448815 132449543 -149744121 + L1MC1 LINE L1 5586 6333 0 192 140 228 18 chr1 132449543 132449600 -149744064 + MIR SINE MIR 183 251 -11 10286 164 34 26 chr1 132449705 132454528 -149739136 + L1MB8 LINE L1 1 5127 -1735 180 0 0 0 chr1 132454528 132454548 -149739116 + (TAA)n Simple_repeat Simple_repeat 2 21 0 10286 164 34 26 chr1 132454548 132454848 -149738816 + L1MB8 LINE L1 5127 5423 -1439 353 180 16 0 chr1 132454849 132454910 -149738754 - MLT1F LTR MaLR -480 62 1 980 299 51 13 chr1 132455758 132456152 -149737512 + L2 LINE L2 1843 2251 -1063 3301 220 54 20 chr1 132456874 132457619 -149736045 + L1MB8 LINE L1 5664 6467 -427 2192 83 0 0 chr1 132457619 132457883 -149735781 + AluSc SINE Alu 34 297 -12 3301 220 54 20 chr1 132457883 132458327 -149735337 + L1MB8 LINE L1 6467 6894 0 1628 241 42 8 chr1 132458794 132459318 -149734346 + L1M4 LINE L1 2646 3187 -2959 21 0 0 0 chr1 132459365 132459386 -149734278 + AT_rich Low_complexity Low_complexity 1 21 0 437 235 43 91 chr1 132459445 132459632 -149734032 + L1ME2 LINE L1 5952 6129 -35 261 269 0 0 chr1 132461406 132461566 -149732098 + GA-rich Low_complexity Low_complexity 2 161 0 190 235 73 59 chr1 132461796 132461864 -149731800 - MIR SINE MIR -87 121 53 981 214 22 9 chr1 132462323 132462547 -149731117 - MIR SINE MIR -18 244 18 347 261 33 0 chr1 132463230 132463322 -149730342 + MIR SINE MIR 86 180 -82 1333 237 3 0 chr1 132463960 132464293 -149729371 - AluJb SINE Alu 0 334 1 354 239 21 104 chr1 132465079 132465225 -149728439 - MIR SINE MIR -62 146 16 943 100 13 0 chr1 132466720 132466870 -149726794 + (TA)n Simple_repeat Simple_repeat 1 152 0 206 32 32 0 chr1 132466870 132466901 -149726763 + (CA)n Simple_repeat Simple_repeat 1 32 0 486 150 221 68 chr1 132468627 132468877 -149724787 - MER4C LTR ERV1 -20 445 157 1093 146 166 47 chr1 132468880 132469181 -149724483 - MER4A LTR ERV1 -326 338 2 481 230 33 99 chr1 132469189 132469432 -149724232 - MER4A-int LTR ERV1 -2 6596 6405 186 43 0 0 chr1 132469464 132469487 -149724177 + (GA)n Simple_repeat Simple_repeat 2 24 0 1567 313 96 26 chr1 132469821 132470804 -149722860 - MER4C-int LTR ERV1 -439 6683 5633 746 343 31 43 chr1 132471137 132471918 -149721746 - MER4C-int LTR ERV1 -1784 5540 2145 480 325 72 52 chr1 132472417 132472931 -149720733 - MER4C-int LTR ERV1 -2897 3904 3381 479 338 68 30 chr1 132473020 132473758 -149719906 - MER4C-int LTR ERV1 -3802 2999 2549 286 290 31 43 chr1 132473738 132473996 -149719668 - MER4C-int LTR ERV1 -1788 3816 3106 * 271 182 0 0 chr1 132475752 132475796 -149717868 - MER4C-int LTR ERV1 -5804 794 751 272 294 69 73 chr1 132475918 132476122 -149717542 - MER4C-int LTR ERV1 -6182 576 374 670 175 123 47 chr1 132476148 132476657 -149717007 - MER4C-int LTR ERV1 -5926 672 1 527 207 191 42 chr1 132476678 132476925 -149716739 - MER4C LTR ERV1 -18 447 159 1245 154 132 47 chr1 132476930 132477249 -149716415 - MER4A LTR ERV1 -318 346 1 181 239 65 0 chr1 132477251 132477297 -149716367 - MIR SINE MIR -92 170 122 263 261 72 0 chr1 132479291 132479360 -149714304 - Charlie8 DNA MER1_type -2283 134 61 24 0 0 0 chr1 132479545 132479569 -149714095 + AT_rich Low_complexity Low_complexity 1 24 0 368 191 85 32 chr1 132480635 132480729 -149712935 - L1MB7 LINE L1 -1205 4941 4843 3659 214 46 19 chr1 132480730 132481933 -149711731 + L1MB7 LINE L1 4950 6184 0 1558 246 48 4 chr1 132482436 132482940 -149710724 + L1M4 LINE L1 2665 3190 -2956 21 36 0 0 chr1 132482970 132482998 -149710666 + AT_rich Low_complexity Low_complexity 1 28 0 688 221 9 77 chr1 132483073 132483295 -149710369 + L1ME2 LINE L1 5952 6158 -6 186 274 0 0 chr1 132485009 132485111 -149708553 + GA-rich Low_complexity Low_complexity 2 103 0 257 0 30 0 chr1 132485788 132485821 -149707843 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 928 238 21 8 chr1 132485910 132486145 -149707519 - MIR SINE MIR -13 249 12 252 231 46 0 chr1 132486698 132486763 -149706901 + MIR SINE MIR 113 180 -82 1380 195 0 35 chr1 132487410 132487692 -149705972 - AluJb SINE Alu -5 307 36 336 281 0 82 chr1 132488539 132488674 -149704990 - MIR SINE MIR -114 148 25 2122 113 3 46 chr1 132489251 132489578 -149704086 - AluSq SINE Alu 0 313 1 249 33 0 0 chr1 132490342 132490372 -149703292 + (CA)n Simple_repeat Simple_repeat 2 31 0 322 218 51 0 chr1 132492043 132492121 -149701543 - MIR SINE MIR -59 203 122 238 316 91 35 chr1 132494584 132494815 -149698849 - L2 LINE L2 -220 3052 2809 360 119 0 0 chr1 132495944 132496003 -149697661 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 483 71 35 12 chr1 132496365 132496450 -149697214 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 261 191 16 79 chr1 132497103 132497166 -149696498 + MER45 DNA AcHobo 1523 1581 0 326 218 23 23 chr1 132499030 132499117 -149694547 + MER5B DNA MER1_type 1 87 -91 1448 159 55 45 chr1 132499284 132499574 -149694090 + AluJb SINE Alu 16 308 -4 600 328 101 19 chr1 132499637 132500246 -149693418 + L2 LINE L2 2650 3313 0 1344 196 31 101 chr1 132501467 132501825 -149691839 - MLT1A1 LTR MaLR -29 336 4 4679 185 68 8 chr1 132503293 132504265 -149689399 + L1MC1 LINE L1 5297 6333 0 439 220 160 0 chr1 132504391 132504541 -149689123 - L1ME LINE L1 -455 5666 5493 1790 149 0 61 chr1 132504698 132505027 -149688637 - AluSx SINE Alu -2 310 2 1038 286 152 18 chr1 132505077 132505458 -149688206 - MLT1E LTR MaLR -161 432 1 216 302 0 0 chr1 132505959 132506012 -149687652 - L2 LINE L2 -1 3271 3219 812 327 60 45 chr1 132506130 132506684 -149686980 + L2 LINE L2 1690 2251 -1063 311 202 85 21 chr1 132508551 132508645 -149685019 - L1ME LINE L1 -1205 4941 4842 * 3707 219 38 20 chr1 132508643 132509850 -149683814 + L1MB7 LINE L1 4948 6184 0 1262 271 49 19 chr1 132510304 132510496 -149683168 + L1M4 LINE L1 2646 2831 -3315 2498 60 3 0 chr1 132510496 132510794 -149682870 + AluY SINE Alu 11 309 -2 1262 271 49 19 chr1 132510794 132511128 -149682536 + L1M4 LINE L1 2831 3188 -2958 446 307 39 19 chr1 132511254 132511459 -149682205 + L1ME2 LINE L1 5952 6160 -4 180 200 0 0 chr1 132513200 132513240 -149680424 + (TG)n Simple_repeat Simple_repeat 2 41 0 246 219 0 26 chr1 132513241 132513355 -149680309 + GA-rich Low_complexity Low_complexity 2 112 0 877 242 17 9 chr1 132514148 132514379 -149679285 - MIR SINE MIR -18 244 12 319 289 29 0 chr1 132514958 132515062 -149678602 + MIR SINE MIR 74 180 -82 1556 214 0 0 chr1 132515683 132515982 -149677682 - AluJb SINE Alu -13 299 1 314 264 7 90 chr1 132516759 132516903 -149676761 - MIR SINE MIR -61 147 16 2803 151 41 101 chr1 132517041 132517702 -149675962 - LTR1 LTR ERV1 0 785 165 2052 138 66 12 chr1 132517702 132518163 -149675501 - HUERS-P2 LTR ERV1 -254 2834 2324 277 276 46 0 chr1 132519759 132519846 -149673818 - MIR SINE MIR -59 203 113 265 261 54 22 chr1 132521813 132521905 -149671759 - Charlie8 DNA MER1_type -2265 152 58 21 0 0 0 chr1 132522079 132522100 -149671564 + AT_rich Low_complexity Low_complexity 1 21 0 261 311 102 34 chr1 132522316 132522522 -149671142 - L2 LINE L2 -246 3026 2807 474 65 0 0 chr1 132523662 132523724 -149669940 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 233 197 16 82 chr1 132524755 132524816 -149668848 + MER45 DNA AcHobo 1524 1580 -1 547 134 134 0 chr1 132524965 132525062 -149668602 + FLAM_A SINE Alu 10 119 -23 350 279 19 0 chr1 132525135 132525239 -149668425 - MIR SINE MIR -59 149 44 375 117 26 13 chr1 132525606 132525683 -149667981 + GA-rich Low_complexity Low_complexity 4 81 0 1122 89 11 6 chr1 132525683 132525862 -149667802 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 263 252 195 24 chr1 132526366 132526489 -149667175 + MIR3 SINE MIR 48 191 -17 216 239 56 0 chr1 132526895 132526966 -149666698 - MIR SINE MIR -70 138 64 2893 114 54 11 chr1 132529065 132529531 -149664133 - LTR19A LTR ERV1 0 486 1 5401 85 28 1 chr1 132529531 132530274 -149663390 - LTR19A-int LTR ERV1 0 5586 4824 * 6473 59 10 0 chr1 132530273 132531083 -149662581 - LTR19A-int LTR ERV1 -967 4619 3802 * 16074 80 34 8 chr1 132531079 132534466 -149659198 - LTR19A-int LTR ERV1 -2052 3534 1 2709 135 65 4 chr1 132534466 132534924 -149658740 - LTR19A LTR ERV1 0 486 1 348 238 12 12 chr1 132534945 132535025 -149658639 + MER5B DNA MER1_type 6 85 -93 1280 214 53 40 chr1 132535184 132535487 -149658177 + AluJb SINE Alu 1 307 -5 576 334 96 19 chr1 132535521 132536170 -149657494 + L2 LINE L2 2619 3313 0 1153 239 16 86 chr1 132537332 132537717 -149655947 - MLT1A1 LTR MaLR -4 361 4 189 0 0 0 chr1 132538694 132538715 -149654949 + (T)n Simple_repeat Simple_repeat 1 21 0 5440 162 37 6 chr1 132539194 132540168 -149653496 + L1MC1 LINE L1 5330 6333 0 387 250 157 4 chr1 132540296 132540477 -149653187 - L1ME LINE L1 -455 5666 5465 1222 268 150 18 chr1 132540635 132541016 -149652648 - MLT1E LTR MaLR -162 431 1 424 168 84 32 chr1 132542368 132542463 -149651201 - L1ME LINE L1 -1205 4941 4842 1228 232 46 4 chr1 132542466 132542999 -149650665 + L1M4 LINE L1 4954 5515 -659 * 44194 46 4 4 chr1 132542990 132549146 -149644518 + L1PA4 LINE L1 2 6155 0 2320 228 40 38 chr1 132549143 132549541 -149644123 + L1MB8 LINE L1 5471 5872 -306 * 1919 123 69 0 chr1 132549541 132549818 -149643846 + AluSx SINE Alu 1 296 -16 2320 228 40 38 chr1 132549818 132550126 -149643538 + L1MB8 LINE L1 5872 6178 0 1521 237 39 39 chr1 132550580 132551019 -149642645 + L1M4 LINE L1 2646 3087 -3059 2208 118 3 0 chr1 132551019 132551316 -149642348 + AluSg SINE Alu 1 298 -12 1521 237 39 39 chr1 132551316 132551420 -149642244 + L1M4 LINE L1 3086 3189 -2957 27 0 0 0 chr1 132551459 132551486 -149642178 + AT_rich Low_complexity Low_complexity 1 27 0 762 252 3 28 chr1 132551534 132551765 -149641899 + L1ME2 LINE L1 5934 6158 -6 419 293 0 0 chr1 132553474 132553614 -149640050 + GA-rich Low_complexity Low_complexity 1 140 0 21 0 0 0 chr1 132553705 132553726 -149639938 + AT_rich Low_complexity Low_complexity 1 21 0 815 243 54 0 chr1 132554403 132554625 -149639039 - MIR SINE MIR -17 245 12 367 293 35 0 chr1 132555300 132555416 -149638248 + MIR SINE MIR 74 193 -69 205 239 68 57 chr1 132555721 132555809 -149637855 + L2 LINE L2 2411 2499 -815 1516 178 9 37 chr1 132556067 132556388 -149637276 - AluJb SINE Alu 0 312 1 343 259 46 46 chr1 132557172 132557303 -149636361 - MIR SINE MIR -122 140 10 255 241 38 0 chr1 132560597 132560676 -149632988 - MIR SINE MIR -59 203 122 1266 208 52 39 chr1 132563383 132563691 -149629973 + AluJb SINE Alu 1 312 0 575 315 118 31 chr1 132563732 132564364 -149629300 + L2 LINE L2 2631 3313 0 6191 72 19 0 chr1 132565056 132565848 -149627816 - L1PA7 LINE L1 0 6469 5663 * 9446 111 1 1 chr1 132565847 132567202 -149626462 - L1PA7 LINE L1 -1422 5039 3685 * 25732 53 1 0 chr1 132567199 132571156 -149622508 + L1PA5 LINE L1 2195 6154 0 10929 109 16 1 chr1 132571156 132572661 -149621003 - L1PA7 LINE L1 -4929 1532 6 986 230 31 97 chr1 132573160 132573543 -149620121 - MLT1A1 LTR MaLR -4 361 4 4906 178 40 30 chr1 132574990 132575394 -149618270 + L1MC1 LINE L1 5307 5706 -627 2258 116 6 0 chr1 132575394 132575705 -149617959 - AluSp SINE Alu 0 313 1 4906 178 40 30 chr1 132575705 132576316 -149617348 + L1MC1 LINE L1 5706 6332 -1 199 156 219 16 chr1 132576317 132576381 -149617283 + MIR SINE MIR 184 260 -2 372 245 159 0 chr1 132576447 132576598 -149617066 - L1ME LINE L1 -455 5666 5492 1087 280 153 16 chr1 132576790 132577162 -149616502 - MLT1E LTR MaLR -170 423 1 879 314 35 61 chr1 132577862 132578403 -149615261 + L2 LINE L2 1725 2251 -1063 347 194 97 32 chr1 132580286 132580379 -149613285 - L1ME LINE L1 -1206 4940 4842 3608 222 36 17 chr1 132580382 132581580 -149612084 + L1MB8 LINE L1 4954 6178 0 1661 253 30 4 chr1 132582044 132582573 -149611091 + L1M4 LINE L1 2646 3188 -2958 567 278 11 6 chr1 132582626 132582802 -149610862 + L1ME2 LINE L1 5988 6164 0 225 183 0 0 chr1 132584549 132584609 -149609055 + GA-rich Low_complexity Low_complexity 2 61 0 2302 107 3 0 chr1 132584804 132585102 -149608562 + AluSg SINE Alu 1 299 -11 894 224 46 9 chr1 132585699 132585918 -149607746 - MIR SINE MIR -18 244 18 228 155 86 0 chr1 132586623 132586681 -149606983 + MIR SINE MIR 103 165 -97 180 244 24 49 chr1 132587055 132587137 -149606527 + L2 LINE L2 2420 2499 -815 1608 190 23 16 chr1 132587374 132587684 -149605980 - AluJb SINE Alu 0 312 1 284 277 22 102 chr1 132588464 132588601 -149605063 - MIR SINE MIR -67 141 16 240 35 0 0 chr1 132589200 132589229 -149604435 + (A)n Simple_repeat Simple_repeat 1 29 0 246 62 0 0 chr1 132590280 132590312 -149603352 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 231 64 13 chr1 132591786 132591864 -149601800 - MIR SINE MIR -59 203 122 346 215 38 0 chr1 132593758 132593837 -149599827 - Charlie8 DNA MER1_type -2266 151 70 26 0 0 0 chr1 132594018 132594044 -149599620 + AT_rich Low_complexity Low_complexity 1 26 0 249 309 88 22 chr1 132594261 132594397 -149599267 - L2 LINE L2 -246 3026 2882 186 71 0 0 chr1 132595612 132595640 -149598024 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 219 69 0 0 chr1 132596140 132596169 -149597495 + (T)n Simple_repeat Simple_repeat 1 29 0 295 211 18 0 chr1 132596683 132596740 -149596924 + MER45 DNA AcHobo 1524 1581 0 507 183 135 0 chr1 132596880 132596984 -149596680 + FLAM_A SINE Alu 3 120 -13 261 222 16 16 chr1 132597060 132597123 -149596541 - MIR SINE MIR -64 144 82 255 285 179 8 chr1 132597521 132597644 -149596020 + MIR3 SINE MIR 48 191 -17 230 225 56 0 chr1 132598052 132598123 -149595541 - MIR SINE MIR -70 138 64 262 259 25 25 chr1 132600242 132600323 -149593341 + MER5B DNA MER1_type 6 86 -92 1305 193 53 40 chr1 132600476 132600776 -149592888 + AluJb SINE Alu 1 304 -8 557 337 59 14 chr1 132600838 132601238 -149592426 + L2 LINE L2 2650 3061 -252 191 225 175 25 chr1 132601313 132601393 -149592271 + MIR SINE MIR 166 257 -5 429 230 162 0 chr1 132601459 132601622 -149592042 - L1ME LINE L1 -455 5666 5482 1044 281 157 19 chr1 132601803 132602173 -149591491 - MLT1E LTR MaLR -172 421 1 734 338 48 18 chr1 132603012 132603409 -149590255 + L2 LINE L2 1843 2251 -1063 22 0 0 0 chr1 132603703 132603725 -149589939 + AT_rich Low_complexity Low_complexity 1 22 0 305 202 85 21 chr1 132655404 132655498 -149538166 - L1ME LINE L1 -1205 4941 4842 * 2989 236 46 17 chr1 132655496 132656686 -149536978 + L1MB8 LINE L1 4948 6178 0 1500 271 24 11 chr1 132657126 132657662 -149536002 + L1M4 LINE L1 2646 3188 -2958 21 0 0 0 chr1 132657708 132657729 -149535935 + AT_rich Low_complexity Low_complexity 1 21 0 601 262 9 72 chr1 132657787 132658008 -149535656 + L1ME2 LINE L1 5952 6158 -6 2519 144 2 23 chr1 132658212 132658650 -149535014 + LTR3 LTR ERVK 1 429 0 386 270 9 0 chr1 132660161 132660276 -149533388 + GA-rich Low_complexity Low_complexity 2 117 0 964 225 17 9 chr1 132661036 132661267 -149532397 - MIR SINE MIR -18 244 12 360 259 45 0 chr1 132661851 132661963 -149531701 + MIR SINE MIR 76 192 -70 204 233 126 10 chr1 132662244 132662347 -149531317 + L2 LINE L2 2385 2499 -815 1628 215 0 0 chr1 132662578 132662880 -149530784 - AluJb SINE Alu -10 302 1 315 292 8 54 chr1 132663650 132663780 -149529884 - MIR SINE MIR -114 148 25 3509 138 50 109 chr1 132663931 132664765 -149528899 - LTR1 LTR ERV1 0 785 1 943 99 12 18 chr1 132665264 132665435 -149528229 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 192 40 0 0 chr1 132666442 132666467 -149527197 + (CA)n Simple_repeat Simple_repeat 2 26 0 211 274 48 65 chr1 132668069 132668193 -149525471 - MIR SINE MIR -19 243 122 209 211 21 63 chr1 132668731 132668826 -149524838 + CT-rich Low_complexity Low_complexity 4 94 0 37275 96 8 12 chr1 132669323 132672524 -149521140 + L1PA6 LINE L1 11 3177 -2977 2849 13 0 0 chr1 132672524 132672829 -149520835 + AluYa5 SINE Alu 1 305 -6 37275 96 8 12 chr1 132672829 132675789 -149517875 + L1PA6 LINE L1 3177 6147 -7 26 0 0 0 chr1 132676947 132676973 -149516691 + AT_rich Low_complexity Low_complexity 1 26 0 237 361 89 12 chr1 132677191 132677360 -149516304 - L2 LINE L2 -246 3026 2845 1950 136 17 7 chr1 132677483 132677778 -149515886 + AluSx SINE Alu 1 298 -14 185 81 0 27 chr1 132677796 132677833 -149515831 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr1 132678777 132678798 -149514866 + AT_rich Low_complexity Low_complexity 1 21 0 273 228 18 0 chr1 132679956 132680013 -149513651 + MER45 DNA AcHobo 1524 1581 0 472 194 146 0 chr1 132680151 132680254 -149513410 + FLAM_A SINE Alu 3 120 -13 280 224 17 0 chr1 132680327 132680385 -149513279 - MIR SINE MIR -61 147 89 310 268 179 8 chr1 132680747 132680870 -149512794 + MIR3 SINE MIR 48 191 -17 216 239 56 0 chr1 132681274 132681345 -149512319 - MIR SINE MIR -70 138 64 246 270 14 27 chr1 132683456 132683530 -149510134 + MER5B DNA MER1_type 6 78 -100 1215 199 58 41 chr1 132683694 132683986 -149509678 + AluJb SINE Alu 5 301 -1 625 329 96 22 chr1 132684020 132684671 -149508993 + L2 LINE L2 2619 3312 -1 2183 102 11 0 chr1 132685146 132685460 -149508204 + AluY SINE Alu 1 317 0 1419 211 22 52 chr1 132686125 132686494 -149507170 - MLT1A1 LTR MaLR -4 361 4 3155 166 48 13 chr1 132687922 132688524 -149505140 + L1MC1 LINE L1 5307 5929 -404 1288 203 115 0 chr1 132688526 132688847 -149504817 + L1MC1 LINE L1 5976 6333 0 351 230 144 46 chr1 132688957 132689131 -149504533 - L1ME LINE L1 -439 5682 5492 1075 286 152 18 chr1 132689320 132689701 -149503963 - MLT1E LTR MaLR -161 432 1 190 327 0 0 chr1 132690201 132690256 -149503408 - L2 LINE L2 0 3313 3259 620 309 56 71 chr1 132690440 132690919 -149502745 + L2 LINE L2 1763 2234 -1080 358 191 85 21 chr1 132692809 132692903 -149500761 - L1ME LINE L1 -1205 4941 4842 * 3436 233 48 14 chr1 132692901 132694092 -149499572 + L1MB7 LINE L1 4948 6184 0 1458 274 24 11 chr1 132694532 132695068 -149498596 + L1M4 LINE L1 2646 3188 -2958 21 0 0 0 chr1 132695114 132695135 -149498529 + AT_rich Low_complexity Low_complexity 1 21 0 571 249 24 84 chr1 132695194 132695407 -149498257 + L1ME2 LINE L1 5952 6151 -13 2488 76 0 0 chr1 132695420 132695722 -149497942 - AluY SINE Alu -9 302 1 373 221 14 0 chr1 132697454 132697599 -149496065 + GA-rich Low_complexity Low_complexity 1 147 0 918 242 17 9 chr1 132698375 132698606 -149495058 - MIR SINE MIR -18 244 12 361 262 29 0 chr1 132699187 132699290 -149494374 + MIR SINE MIR 75 180 -82 1582 197 7 0 chr1 132699916 132700206 -149493458 - AluJb SINE Alu -20 292 1 297 298 8 61 chr1 132700975 132701106 -149492558 - MIR SINE MIR -114 148 25 3486 142 64 103 chr1 132701260 132702077 -149491587 - LTR1 LTR ERV1 0 785 1 22 35 0 0 chr1 132702918 132702947 -149490717 + AT_rich Low_complexity Low_complexity 1 29 0 267 54 0 0 chr1 132703605 132703642 -149490022 + (CA)n Simple_repeat Simple_repeat 2 38 0 2474 63 0 3 chr1 132704978 132705278 -149488386 - AluY SINE Alu -12 299 1 246 192 90 39 chr1 132705624 132705702 -149487962 - MIR SINE MIR -59 203 122 243 209 45 30 chr1 132707689 132707756 -149485908 - Charlie8 DNA MER1_type -2296 121 54 26 0 0 0 chr1 132707932 132707958 -149485706 + AT_rich Low_complexity Low_complexity 1 26 0 316 333 57 25 chr1 132708158 132708317 -149485347 - L2 LINE L2 -227 3045 2882 2159 113 3 3 chr1 132708469 132708778 -149484886 + AluSx SINE Alu 1 309 -3 186 306 63 9 chr1 132709271 132709382 -149484282 + L2 LINE L2 2625 2741 -573 272 179 20 0 chr1 132710875 132710932 -149482732 + MER45 DNA AcHobo 1524 1581 0 505 175 146 0 chr1 132711070 132711173 -149482491 + FLAM_A SINE Alu 3 120 -13 320 212 15 15 chr1 132711245 132711311 -149482353 - MIR SINE MIR -61 147 82 281 309 179 8 chr1 132711722 132711845 -149481819 + MIR3 SINE MIR 48 191 -17 359 232 12 24 chr1 132714447 132714529 -149479135 + MER5B DNA MER1_type 6 86 -92 31 58 0 0 chr1 132718730 132718782 -149474882 + GC_rich Low_complexity Low_complexity 1 52 0 28 29 0 0 chr1 132719014 132719049 -149474615 + GC_rich Low_complexity Low_complexity 1 35 0 2137 99 10 0 chr1 132720030 132720333 -149473331 - AluSg SINE Alu -4 306 1 365 289 29 10 chr1 132720919 132721023 -149472641 - MIR SINE MIR -10 252 147 374 271 54 54 chr1 132721883 132722012 -149471652 - MIR SINE MIR -114 148 20 336 328 66 35 chr1 132722761 132722959 -149470705 + MIR SINE MIR 33 236 -26 21 0 0 0 chr1 132723502 132723523 -149470141 + GC_rich Low_complexity Low_complexity 1 21 0 523 258 140 5 chr1 132724385 132724571 -149469093 - MIR SINE MIR -37 225 15 564 307 93 9 chr1 132724914 132725129 -149468535 + MIR SINE MIR 30 262 0 218 264 186 39 chr1 132725580 132725709 -149467955 + MIR3 SINE MIR 43 190 -18 1121 133 9 55 chr1 132726105 132726323 -149467341 + AluJo SINE Alu 85 292 -20 22 0 0 0 chr1 132727165 132727187 -149466477 + GC_rich Low_complexity Low_complexity 1 22 0 318 267 133 0 chr1 132728536 132728641 -149465023 - MIR3 SINE MIR -35 173 55 1413 176 165 14 chr1 132728766 132728800 -149464864 - MLT2D LTR ERVL -3 411 383 333 0 0 0 chr1 132728800 132728837 -149464827 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr1 132728839 132728860 -149464804 + (GA)n Simple_repeat Simple_repeat 2 22 0 1413 176 165 14 chr1 132728860 132729179 -149464485 - MLT2D LTR ERVL -31 383 1 201 231 108 15 chr1 132729424 132729489 -149464175 + L3b LINE CR1 1299 1369 -214 244 272 0 49 chr1 132729532 132729613 -149464051 + L3 LINE CR1 1500 1576 -1 1271 230 48 48 chr1 132730064 132730564 -149463100 + L1MC5 LINE L1 7404 7903 -58 348 281 39 59 chr1 132732080 132732233 -149461431 - MIR3 SINE MIR -48 160 11 373 66 33 0 chr1 132733388 132733449 -149460215 + (GA)n Simple_repeat Simple_repeat 1 63 0 201 286 127 0 chr1 132733860 132733923 -149459741 + L2 LINE L2 3184 3254 -18 246 337 173 12 chr1 132733947 132734202 -149459462 + L2 LINE L2 1992 2287 -1027 381 333 48 6 chr1 132734310 132734478 -149459186 + MIR SINE MIR 20 194 -68 220 260 120 70 chr1 132734466 132734666 -149458998 + L2 LINE L2 2297 2506 -808 * 1287 199 72 0 chr1 132735042 132735318 -149458346 + AluJo SINE Alu 1 296 -16 543 231 109 19 chr1 132735326 132735482 -149458182 + MIR SINE MIR 29 198 -64 1049 138 140 23 chr1 132736835 132737029 -149456635 + L1MC1 LINE L1 5188 5416 -823 2781 94 11 0 chr1 132737029 132737400 -149456264 + THE1C LTR MaLR 1 375 0 1049 138 140 23 chr1 132737400 132737489 -149456175 + L1MC1 LINE L1 5416 5493 -746 2919 139 27 2 chr1 132737489 132737972 -149455692 + L1MC1 LINE L1 5820 6314 -19 233 283 0 0 chr1 132738133 132738193 -149455471 - L2 LINE L2 -3 3310 3251 448 286 97 49 chr1 132739959 132740184 -149453480 + MIR SINE MIR 24 262 0 225 250 54 0 chr1 132740542 132740598 -149453066 - L2 LINE L2 -4 3268 3210 378 0 0 0 chr1 132741768 132741810 -149451854 + (CA)n Simple_repeat Simple_repeat 2 43 0 531 96 0 0 chr1 132743622 132743705 -149449959 + (GCTG)n Simple_repeat Simple_repeat 2 84 0 2267 82 0 19 chr1 132744836 132745152 -149448512 + AluY SINE Alu 1 310 -1 1588 142 36 18 chr1 132745156 132745437 -149448227 + AluJb SINE Alu 3 288 -24 201 291 96 85 chr1 132746321 132746592 -149447072 - L2 LINE L2 -1435 1879 1606 342 296 70 58 chr1 132747079 132747251 -149446413 + MLT1K LTR MaLR 3 176 -412 625 177 9 9 chr1 132747356 132747469 -149446195 + MLT1K LTR MaLR 466 578 -10 380 253 11 0 chr1 132748011 132748106 -149445558 + MER94 DNA DNA 3 98 -36 597 250 45 102 chr1 132748895 132749139 -149444525 + MLT1K LTR MaLR 1 230 -358 385 269 58 62 chr1 132749225 132749433 -149444231 + MLT1K LTR MaLR 374 580 -8 1655 191 0 22 chr1 132749761 132750075 -149443589 + AluJb SINE Alu 1 307 -5 468 267 154 70 chr1 132750225 132750581 -149443083 + L2 LINE L2 2928 3313 0 332 303 61 6 chr1 132751113 132751278 -149442386 + L1M4 LINE L1 4064 4237 -1909 316 313 30 23 chr1 132751294 132751425 -149442239 - MIR SINE MIR -89 173 42 248 318 143 60 chr1 132751526 132751875 -149441789 - L2 LINE L2 0 3272 2895 276 303 210 17 chr1 132752319 132752438 -149441226 - L2 LINE L2 0 3313 3172 358 263 0 50 chr1 132752493 132752592 -149441072 - MIR SINE MIR -27 235 142 222 171 0 0 chr1 132752639 132752674 -149440990 - MIR SINE MIR -207 55 21 248 356 40 52 chr1 132752767 132753017 -149440647 - L2 LINE L2 -196 3076 2830 334 309 8 32 chr1 132753329 132753455 -149440209 - L2 LINE L2 0 3272 3150 400 222 74 37 chr1 132753517 132753652 -149440012 - MIR3 SINE MIR -49 159 20 385 269 14 50 chr1 132753829 132753970 -149439694 - MIR SINE MIR -50 212 77 778 260 48 8 chr1 132756983 132757233 -149436431 - MIR SINE MIR 0 262 3 198 365 49 20 chr1 132757764 132757967 -149435697 - L2 LINE L2 -349 2965 2757 539 265 75 14 chr1 132758036 132758183 -149435481 + MIR SINE MIR 20 175 -87 870 214 124 10 chr1 132758187 132758388 -149435276 - MER58A DNA MER1_type 0 224 1 180 0 0 0 chr1 132758936 132758956 -149434708 + (TC)n Simple_repeat Simple_repeat 2 21 0 2127 136 7 0 chr1 132758956 132759264 -149434400 - AluJo SINE Alu 0 312 3 455 183 98 0 chr1 132761043 132761125 -149432539 + MER81 DNA DNA 1 90 -24 2925 223 57 13 chr1 132761903 132762590 -149431074 - L1ME3A LINE L1 -5 6165 5449 1548 160 0 0 chr1 132762613 132762851 -149430813 + AluJb SINE Alu 1 238 -74 310 91 0 0 chr1 132762917 132762961 -149430703 - Alu SINE Alu -2 300 257 2061 123 3 3 chr1 132763064 132763356 -149430308 - AluSx SINE Alu -18 294 3 606 198 104 0 chr1 132764174 132764280 -149429384 + FAM SINE Alu 43 159 -26 252 0 0 0 chr1 132764280 132764308 -149429356 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2257 103 6 25 chr1 132764311 132764630 -149429034 - AluSq SINE Alu 0 313 1 260 299 0 0 chr1 132765351 132765418 -149428246 - L2 LINE L2 -5 3308 3242 315 239 0 0 chr1 132765733 132765804 -149427860 - L1ME3A LINE L1 -858 5326 5256 1861 165 3 0 chr1 132765849 132766140 -149427524 - AluJb SINE Alu -18 294 3 1403 205 72 8 chr1 132766142 132766508 -149427156 + MER54A LTR ERVL 12 470 -431 430 169 0 0 chr1 132766485 132766556 -149427108 + MER54A LTR ERVL 830 900 -1 * 3562 221 13 2 chr1 132766570 132767356 -149426308 - L1ME3A LINE L1 -907 5239 4446 846 175 0 7 chr1 132767363 132767506 -149426158 + FRAM SINE Alu 34 175 -1 1146 187 50 117 chr1 132767515 132767674 -149425990 - L1ME3A LINE L1 -1702 4444 4276 712 237 0 0 chr1 132767674 132767805 -149425859 - FLAM_C SINE Alu 0 133 3 1146 187 50 117 chr1 132767805 132768063 -149425601 - L1ME3A LINE L1 -1870 4276 4055 279 269 0 43 chr1 132768072 132768165 -149425499 + L1ME4a LINE L1 4745 4833 -1313 2142 164 123 18 chr1 132769231 132769719 -149423945 - LTR64 LTR ERVK -16 542 4 245 271 167 28 chr1 132770028 132770172 -149423492 + L1ME4a LINE L1 5711 5874 -1934 834 169 26 79 chr1 132770239 132770428 -149423236 + MER20 DNA MER1_type 41 219 0 236 254 146 15 chr1 132770430 132770560 -149423104 + L1ME4a LINE L1 5974 6120 -1 206 259 161 12 chr1 132771138 132771219 -149422445 + L2 LINE L2 3171 3263 -9 2587 56 0 0 chr1 132771642 132771944 -149421720 - AluY SINE Alu -9 302 1 382 282 121 17 chr1 132772043 132772217 -149421447 - Charlie8 DNA MER1_type -2178 239 48 1691 192 6 13 chr1 132772263 132772576 -149421088 + AluJo SINE Alu 1 311 -1 2400 214 97 19 chr1 132773619 132774292 -149419372 - MER50 LTR ERV1 0 734 10 1493 183 112 38 chr1 132774307 132774673 -149418991 - MER21B LTR ERV1 -150 713 321 927 140 32 168 chr1 132774701 132774951 -149418713 - MER21B LTR ERV1 -647 216 1 603 252 0 0 chr1 132775486 132775597 -149418067 + FLAM_A SINE Alu 4 114 -19 506 238 40 126 chr1 132776019 132776296 -149417368 + MIR SINE MIR 1 253 -9 1504 188 78 48 chr1 132776825 132777225 -149416439 - MLT2D LTR ERVL -2 412 1 998 189 0 18 chr1 132777316 132777480 -149416184 - FRAM SINE Alu -3 163 3 200 122 0 73 chr1 132778076 132778117 -149415547 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1070 118 85 142 chr1 132778657 132778903 -149414761 + AluJb SINE Alu 1 232 -80 1768 182 3 0 chr1 132778985 132779276 -149414388 - AluJo SINE Alu -20 292 1 367 292 73 10 chr1 132780118 132780310 -149413354 - L1ME4a LINE L1 -209 5912 5709 596 248 74 66 chr1 132780368 132780610 -149413054 - MLT1J1 LTR MaLR 0 446 203 3004 240 62 12 chr1 132780638 132781476 -149412188 - L1ME1 LINE L1 -33 6067 5188 361 283 19 0 chr1 132781503 132781609 -149412055 - L1ME1 LINE L1 -5952 118 11 620 239 22 60 chr1 132781622 132781806 -149411858 - MLT1J1 LTR MaLR -267 179 3 249 143 0 0 chr1 132781960 132781995 -149411669 - MIR SINE MIR -8 254 220 297 297 26 9 chr1 132783744 132783860 -149409804 - MIR SINE MIR -56 152 37 282 216 130 0 chr1 132784944 132785020 -149408644 + MIR SINE MIR 16 103 -105 2242 227 33 96 chr1 132785023 132785921 -149407743 - L1MEc LINE L1 -4580 1816 995 2419 87 0 3 chr1 132785921 132786233 -149407431 - AluSq SINE Alu -2 311 1 2242 227 33 96 chr1 132786233 132786403 -149407261 - L1MEc LINE L1 -5401 995 816 180 77 0 0 chr1 132786403 132786429 -149407235 + (TTA)n Simple_repeat Simple_repeat 3 28 0 38208 88 14 9 chr1 132786429 132788245 -149405419 - L1PA6 LINE L1 -18 6136 4331 2363 80 0 29 chr1 132788245 132788558 -149405106 - AluY SINE Alu -7 304 1 38208 88 14 9 chr1 132788558 132792834 -149400830 - L1PA6 LINE L1 -1823 4331 11 2537 238 95 19 chr1 132792840 132793576 -149400088 - L1MEc LINE L1 -5571 825 34 182 91 30 0 chr1 132794273 132794306 -149399358 + (TA)n Simple_repeat Simple_repeat 2 35 0 347 229 8 92 chr1 132794961 132795092 -149398572 + L2 LINE L2 2858 2977 -337 661 175 178 66 chr1 132795331 132795586 -149398078 + LTR48B LTR ERV1 277 614 -30 1966 160 146 8 chr1 132795876 132796252 -149397412 + MSTA LTR MaLR 1 428 0 10800 112 36 33 chr1 132796252 132797826 -149395838 + MSTA-int LTR MaLR 1 1578 -2 1035 176 124 5 chr1 132797828 132798038 -149395626 + MSTA LTR MaLR 1 235 -193 1619 146 37 4 chr1 132798220 132798488 -149395176 + MER4C LTR ERV1 189 465 0 180 264 85 47 chr1 132799700 132799806 -149393858 + L2 LINE L2 2684 2793 -521 867 312 77 58 chr1 132799810 132800094 -149393570 + MLT1K LTR MaLR 2 279 -309 1886 23 5 0 chr1 132800094 132800309 -149393355 + AluY SINE Alu 94 309 -2 867 312 77 58 chr1 132800309 132800595 -149393069 + MLT1K LTR MaLR 279 583 -5 400 332 111 13 chr1 132800609 132800835 -149392829 + L2 LINE L2 2808 3055 -258 8089 21 3 2 chr1 132800894 132802475 -149391189 + L1PA4 LINE L1 4568 6150 -5 225 0 0 0 chr1 132802528 132802553 -149391111 + (A)n Simple_repeat Simple_repeat 1 25 0 190 214 14 14 chr1 132802823 132802893 -149390771 + CT-rich Low_complexity Low_complexity 4 73 0 22 56 0 0 chr1 132802961 132802997 -149390667 + AT_rich Low_complexity Low_complexity 1 36 0 263 253 161 23 chr1 132802997 132803084 -149390580 + L2 LINE L2 3160 3258 -14 666 295 87 48 chr1 132803115 132803471 -149390193 + L2 LINE L2 2944 3313 0 545 302 0 35 chr1 132803504 132803676 -149389988 - MIR SINE MIR -57 205 40 532 47 0 0 chr1 132803722 132803786 -149389878 - L1PA6 LINE L1 -2 6152 6089 1142 127 6 12 chr1 132804823 132804996 -149388668 - FRAM SINE Alu -6 170 1 199 242 76 30 chr1 132805039 132805105 -149388559 + L2 LINE L2 3240 3308 -5 * 230 289 123 18 chr1 132805102 132805216 -149388448 - L2 LINE L2 -14 3258 3133 253 242 31 70 chr1 132806405 132806442 -149387222 + L2 LINE L2 3191 3228 -85 3730 17 10 2 chr1 132806442 132806852 -149386812 - L1PA3 LINE L1 0 6155 5743 253 242 31 70 chr1 132806852 132806942 -149386722 + L2 LINE L2 3228 3313 0 180 0 0 0 chr1 132807207 132807227 -149386437 + (GGA)n Simple_repeat Simple_repeat 3 22 0 355 171 97 131 chr1 132809734 132809910 -149383754 - MER112 DNA MER1_type -53 207 38 1067 168 6 11 chr1 132809910 132810089 -149383575 + AluJ SINE Alu 1 178 -134 721 113 0 0 chr1 132810146 132810243 -149383421 + AluJ SINE Alu 187 283 -29 568 245 82 25 chr1 132810396 132810592 -149383072 + MER112 DNA MER1_type 1 207 -53 1435 60 0 0 chr1 132812421 132812587 -149381077 + AluSp SINE Alu 147 312 -1 591 312 125 42 chr1 132812587 132813058 -149380606 - L1 LINE L1 -854 5292 4783 502 299 20 7 chr1 132813551 132813698 -149379966 + MIR SINE MIR 34 182 -80 522 237 145 0 chr1 132813927 132814079 -149379585 + MIR SINE MIR 85 258 -4 291 238 69 69 chr1 132814667 132814768 -149378896 + MIR3 SINE MIR 93 193 -15 315 322 198 26 chr1 132814773 132815046 -149378618 - L3b LINE CR1 -11 1572 1253 393 287 60 27 chr1 132815201 132815351 -149378313 - MIR3 SINE MIR -31 177 23 289 301 142 0 chr1 132815734 132815847 -149377817 - L2 LINE L2 0 3272 3144 189 205 205 0 chr1 132815852 132815891 -149377773 - L2 LINE L2 -17 3296 3250 289 79 0 0 chr1 132816824 132816862 -149376802 - tRNA-Gly-GGA tRNA tRNA -37 38 1 1753 142 9 63 chr1 132817925 132818241 -149375423 + AluJb SINE Alu 1 299 -13 225 357 31 62 chr1 132819120 132819249 -149374415 + L2 LINE L2 2986 3110 -162 378 0 0 0 chr1 132821508 132821550 -149372114 + (TG)n Simple_repeat Simple_repeat 2 43 0 3688 113 51 34 chr1 132822681 132822873 -149370791 - LTR43 LTR ERV1 0 602 415 2422 65 3 16 chr1 132822873 132823182 -149370482 + AluY SINE Alu 1 305 -6 3688 113 51 34 chr1 132823182 132823581 -149370083 - LTR43 LTR ERV1 -187 415 1 192 300 80 47 chr1 132824073 132824223 -149369441 + L3b LINE CR1 1293 1447 -136 359 359 132 0 chr1 132825500 132825667 -149367997 + L3 LINE CR1 250 438 -1139 303 360 0 0 chr1 132825932 132826021 -149367643 - L1MC/D LINE L1 -1986 5822 5734 763 311 179 18 chr1 132826023 132826577 -149367087 + L3 LINE CR1 426 1068 -509 350 262 120 15 chr1 132826955 132827088 -149366576 - MIR SINE MIR -68 140 8 1685 177 33 7 chr1 132828656 132828956 -149364708 - AluJb SINE Alu 0 312 5 287 212 139 36 chr1 132828995 132829132 -149364532 - L1ME4a LINE L1 -8 6113 5963 309 331 91 0 chr1 132829200 132829375 -149364289 - MIR3 SINE MIR -13 195 5 249 292 100 33 chr1 132829666 132829786 -149363878 + MIR SINE MIR 108 235 -27 241 255 157 10 chr1 132831404 132831506 -149362158 + MIR SINE MIR 20 136 -126 223 222 83 93 chr1 132831536 132831644 -149362020 + L2 LINE L2 3163 3269 -44 452 250 138 19 chr1 132832099 132832259 -149361405 - MIR SINE MIR -76 186 8 232 348 36 0 chr1 132833185 132833297 -149360367 - L2 LINE L2 0 3313 3198 246 321 150 14 chr1 132836144 132836284 -149357380 + MIR3 SINE MIR 4 162 -46 182 283 54 11 chr1 132836309 132836401 -149357263 + MIR SINE MIR 64 159 -103 180 219 0 0 chr1 132837355 132837387 -149356277 + MIR SINE MIR 117 148 -114 268 282 91 0 chr1 132838536 132838646 -149355018 - MIR3 SINE MIR -79 129 10 240 254 161 34 chr1 132839819 132839937 -149353727 - L2 LINE L2 -8 3264 3132 326 274 159 25 chr1 132840516 132840673 -149352991 + MIR SINE MIR 79 256 -6 1165 149 0 5 chr1 132841182 132841377 -149352287 - L1M2 LINE L1 -714 5598 5405 955 283 43 33 chr1 132841374 132841773 -149351891 + L1MA9 LINE L1 5872 6274 -38 * 244 48 48 0 chr1 132843014 132843056 -149350608 + (TCC)n Simple_repeat Simple_repeat 1 44 0 25 0 0 0 chr1 132843322 132843347 -149350317 + AT_rich Low_complexity Low_complexity 1 25 0 186 220 22 22 chr1 132844660 132844751 -149348913 + CT-rich Low_complexity Low_complexity 4 94 0 1735 123 12 132 chr1 132846690 132847031 -149346633 - AluSx SINE Alu -1 301 2 399 339 119 6 chr1 132847399 132847567 -149346097 - MIR SINE MIR -56 206 20 466 336 66 18 chr1 132848275 132848501 -149345163 + L2 LINE L2 2536 2772 -542 351 0 0 0 chr1 132848735 132848774 -149344890 + (CA)n Simple_repeat Simple_repeat 2 40 0 1554 127 9 112 chr1 132849204 132849385 -149344279 - AluJo SINE Alu -12 300 165 2174 124 0 0 chr1 132849385 132849676 -149343988 - AluSx SINE Alu -14 298 8 1554 127 9 112 chr1 132849676 132849816 -149343848 - AluJo SINE Alu -147 165 12 517 266 118 21 chr1 132849885 132850122 -149343542 - MIR SINE MIR 0 262 3 256 234 54 72 chr1 132850133 132850244 -149343420 - Charlie7 DNA MER1_type -2503 109 1 236 237 0 34 chr1 132850291 132850335 -149343329 + CT-rich Low_complexity Low_complexity 3 46 -13 1615 211 30 0 chr1 132850335 132850634 -149343030 - AluJo SINE Alu -4 308 1 236 237 0 34 chr1 132850634 132850648 -149343016 + CT-rich Low_complexity Low_complexity 46 59 0 318 281 106 56 chr1 132851167 132851327 -149342337 - L1ME4a LINE L1 -197 5924 5757 286 202 83 9 chr1 132851599 132851708 -149341956 - L1ME4a LINE L1 -772 5374 5258 426 341 30 12 chr1 132852123 132852287 -149341377 + L2 LINE L2 3104 3270 -2 324 188 0 0 chr1 132852295 132852359 -149341305 + CT-rich Low_complexity Low_complexity 2 65 0 1704 165 16 29 chr1 132853566 132853881 -149339783 - AluJo SINE Alu -1 311 1 485 242 30 0 chr1 132855383 132855482 -149338182 - L2 LINE L2 -23 3290 3189 419 301 49 18 chr1 132855744 132855907 -149337757 - MIR SINE MIR -77 185 18 642 275 35 6 chr1 132856137 132856308 -149337356 - MIR SINE MIR -40 222 47 299 194 21 7 chr1 132856429 132856573 -149337091 + (TA)n Simple_repeat Simple_repeat 1 146 0 2170 114 3 3 chr1 132856827 132857133 -149336531 + AluY SINE Alu 1 306 -5 575 264 119 10 chr1 132857259 132857562 -149336102 + L1MC4a LINE L1 5527 5862 -1946 392 246 75 80 chr1 132857590 132857789 -149335875 + L1ME4a LINE L1 5924 6121 0 220 359 55 39 chr1 132858499 132858627 -149335037 + MIR3 SINE MIR 78 207 -1 227 248 239 17 chr1 132859188 132859305 -149334359 + MIR SINE MIR 51 193 -69 924 277 51 39 chr1 132860047 132860418 -149333246 - L1MEc LINE L1 -3664 2551 2193 2174 63 53 66 chr1 132860418 132860721 -149332943 - AluY SINE Alu -12 299 1 924 277 51 39 chr1 132860721 132861022 -149332642 - L1MEc LINE L1 -4022 2193 1897 195 352 139 0 chr1 132861176 132861284 -149332380 - L2 LINE L2 -16 3256 3134 199 324 0 15 chr1 132861552 132861620 -149332044 - MIR SINE MIR -56 152 86 271 336 58 15 chr1 132864908 132865045 -149328619 - MIR3 SINE MIR -64 144 2 243 303 92 67 chr1 132865279 132865474 -149328190 + L2 LINE L2 130 329 -2985 2974 300 84 12 chr1 132865528 132867083 -149326581 + L2 LINE L2 463 2129 -1185 770 237 163 52 chr1 132867137 132867500 -149326164 + MER57B LTR ERV1 1 434 0 762 266 37 14 chr1 132867690 132867908 -149325756 - MIR SINE MIR -6 256 34 222 321 46 23 chr1 132868945 132869076 -149324588 - MIR SINE MIR -109 153 20 5056 85 5 1 chr1 132869919 132870577 -149323087 - PABL_A LTR ERV1 0 660 1 2151 123 3 0 chr1 132871549 132871858 -149321806 + AluSx SINE Alu 1 310 -2 358 264 64 0 chr1 132871914 132872054 -149321610 + HAL1 LINE L1 1424 1572 -935 385 239 49 60 chr1 132872247 132872431 -149321233 + L1M4 LINE L1 4281 4462 -1684 31 82 0 0 chr1 132872447 132872520 -149321144 + AT_rich Low_complexity Low_complexity 1 73 0 789 153 8 15 chr1 132872520 132872651 -149321013 - FLAM_C SINE Alu -2 131 2 536 298 35 43 chr1 132872659 132872965 -149320699 + L1M4 LINE L1 4497 4801 -1345 1938 146 3 22 chr1 132872965 132873281 -149320383 + AluSx SINE Alu 1 310 -2 536 298 35 43 chr1 132873281 132873347 -149320317 + L1M4 LINE L1 4801 4866 -1280 21 57 0 0 chr1 132873705 132873740 -149319924 + AT_rich Low_complexity Low_complexity 1 35 0 188 297 81 14 chr1 132873907 132873981 -149319683 - MIR SINE MIR -95 113 35 2586 40 0 0 chr1 132874036 132874333 -149319331 - AluY SINE Alu -14 297 1 569 218 82 0 chr1 132875415 132875525 -149318139 + MER63A DNA MER1_type 56 174 -36 490 259 0 37 chr1 132876470 132876605 -149317059 + FLAM_A SINE Alu 2 131 -2 1520 216 78 17 chr1 132877095 132877506 -149316158 + L1ME3A LINE L1 5733 6168 -2 675 250 54 54 chr1 132878048 132878324 -149315340 + LTR16C LTR ERVL 216 491 0 1609 242 138 28 chr1 132878404 132878932 -149314732 + MLT1E LTR MaLR 2 587 -6 816 118 24 18 chr1 132879019 132879189 -149314475 + CT-rich Low_complexity Low_complexity 3 173 0 999 174 0 0 chr1 132879191 132879352 -149314312 - FRAM SINE Alu -15 161 1 1149 213 100 25 chr1 132880036 132880355 -149313309 - MER2 DNA MER2_type -2 343 1 325 312 24 16 chr1 132881286 132881411 -149312253 - MIR SINE MIR -117 145 20 6757 35 0 0 chr1 132881519 132882282 -149311382 - MER11D LTR ERVK 0 897 135 25 0 0 0 chr1 132882329 132882354 -149311310 + AT_rich Low_complexity Low_complexity 1 25 0 1603 122 0 8 chr1 132882354 132882601 -149311063 - L1MA2 LINE L1 -7 6297 6053 817 189 17 39 chr1 132882627 132882807 -149310857 - FRAM SINE Alu 0 176 1 751 195 11 17 chr1 132882813 132882987 -149310677 - L1MA10 LINE L1 0 6334 6162 1004 250 134 30 chr1 132883624 132884200 -149309464 - HAL1b LINE L1 0 1348 713 921 271 78 15 chr1 132884240 132884635 -149309029 - HAL1b LINE L1 -839 509 90 303 165 89 38 chr1 132885031 132885066 -149308598 + LTR37A LTR ERV1 8 40 -386 2146 114 27 0 chr1 132885066 132885364 -149308300 - AluSx SINE Alu -6 306 1 303 165 89 38 chr1 132885364 132885407 -149308257 + LTR37A LTR ERV1 40 90 -336 258 243 71 0 chr1 132886179 132886249 -149307415 - MIR SINE MIR -10 252 178 476 337 64 27 chr1 132886592 132886779 -149306885 + MER91A DNA MER1_type 3 196 0 441 319 127 53 chr1 132886782 132887214 -149306450 + MLT1K LTR MaLR 111 574 -14 554 221 9 84 chr1 132887280 132887493 -149306171 + L2 LINE L2 3111 3307 -6 34 42 0 0 chr1 132887739 132887787 -149305877 + AT_rich Low_complexity Low_complexity 1 48 0 2280 63 0 4 chr1 132888054 132888323 -149305341 - AluY SINE Alu -33 278 11 1988 176 65 23 chr1 132890081 132890478 -149303186 + MLT2D LTR ERVL 1 414 0 453 264 34 7 chr1 132891431 132891579 -149302085 - MIR SINE MIR -109 153 2 225 337 0 20 chr1 132892257 132892355 -149301309 - MER5B DNA MER1_type -61 117 22 337 368 6 12 chr1 132892409 132892572 -149301092 - L3 LINE CR1 -106 1471 1310 1127 199 5 9 chr1 132893005 132893216 -149300448 + MER20 DNA MER1_type 4 213 -6 474 240 20 0 chr1 132893495 132893645 -149300019 - MER113 DNA MER1_type? -368 153 1 270 0 0 0 chr1 132894709 132894739 -149298925 + (CA)n Simple_repeat Simple_repeat 2 31 0 419 186 12 12 chr1 132895402 132895488 -149298176 + MIR SINE MIR 59 144 -64 550 211 6 80 chr1 132895537 132895712 -149297952 - MER104 DNA Tc2 -4 176 15 228 258 297 13 chr1 132897151 132897306 -149296358 - MIR SINE MIR -17 245 47 252 331 52 15 chr1 132898067 132898203 -149295461 + L2 LINE L2 3132 3272 0 1888 157 117 27 chr1 132898501 132898877 -149294787 + ERVL LTR ERVL 1778 2187 -3577 276 28 56 0 chr1 132898903 132898939 -149294725 + ERVL LTR ERVL 2168 2205 -3559 257 324 11 22 chr1 132900005 132900184 -149293480 + CT-rich Low_complexity Low_complexity 1 177 0 200 191 159 0 chr1 132900265 132900328 -149293336 - MIR SINE MIR -73 135 63 407 309 10 10 chr1 132900876 132901147 -149292517 + CT-rich Low_complexity Low_complexity 1 271 0 1660 132 0 37 chr1 132901260 132901533 -149292131 - AluJb SINE Alu -49 263 1 601 272 101 31 chr1 132901542 132901770 -149291894 - MIR SINE MIR -11 251 8 214 355 32 8 chr1 132901816 132901940 -149291724 - MIR SINE MIR -65 197 71 608 302 0 40 chr1 132902066 132902288 -149291376 + MIR SINE MIR 45 257 -5 2142 275 21 41 chr1 132903116 132903546 -149290118 - L1M4 LINE L1 -1290 4680 4243 2061 143 3 0 chr1 132903546 132903846 -149289818 - AluY SINE Alu -10 301 1 2142 275 21 41 chr1 132903846 132904429 -149289235 - L1M4 LINE L1 -1727 4243 3688 29 0 0 0 chr1 132904430 132904459 -149289205 + AT_rich Low_complexity Low_complexity 1 29 0 274 247 11 0 chr1 132904502 132904591 -149289073 - L1MA10 LINE L1 -4 6330 6241 301 204 41 51 chr1 132904623 132904721 -149288943 - L1MEc LINE L1 -3406 2809 2713 381 297 107 42 chr1 132905211 132905474 -149288190 - L1MEc LINE L1 -5988 408 129 1866 225 78 31 chr1 132905579 132906202 -149287462 + MLT1E3 LTR MaLR 1 624 0 309 284 0 0 chr1 132906890 132906964 -149286700 - LTR16B LTR ERVL -390 74 1 580 260 52 23 chr1 132906984 132907157 -149286507 - ERVL LTR ERVL -3761 2003 1826 339 377 9 9 chr1 132907345 132907565 -149286099 - ERVL LTR ERVL -3549 1447 1228 618 229 99 51 chr1 132907603 132907868 -149285796 - LTR33 LTR ERVL -248 275 29 262 284 42 72 chr1 132909650 132909981 -149283683 + L1PA8A LINE L1 5480 5800 -331 * 1918 220 135 14 chr1 132909709 132910272 -149283392 + L1ME2 LINE L1 5524 6154 -10 2137 264 68 25 chr1 132910757 132911749 -149281915 + L1M4 LINE L1 2913 3947 -2199 3563 261 63 46 chr1 132911943 132913522 -149280142 - L1M4 LINE L1 -4517 1374 28 222 128 0 0 chr1 132914355 132914394 -149279270 + (TG)n Simple_repeat Simple_repeat 1 39 0 301 204 71 44 chr1 132917172 132917285 -149276379 - MIR SINE MIR -57 205 90 432 220 119 38 chr1 132920837 132920996 -149272668 + MIR SINE MIR 8 179 -83 270 374 43 0 chr1 132921093 132921208 -149272456 - L2 LINE L2 -20 3252 3133 1039 188 0 0 chr1 132924008 132924178 -149269486 - FRAM SINE Alu -1 175 6 463 262 99 54 chr1 132924198 132924492 -149269172 + L1ME3 LINE L1 5589 5915 -247 204 262 119 32 chr1 132924761 132924887 -149268777 - MIR SINE MIR -2 260 124 306 0 0 0 chr1 132925432 132925466 -149268198 + (CA)n Simple_repeat Simple_repeat 1 34 0 928 49 0 16 chr1 132925921 132926043 -149267621 - L1PA7 LINE L1 -276 5878 5759 * 5107 78 7 0 chr1 132926042 132927060 -149266604 + L1PA7 LINE L1 4705 5726 -428 2261 98 7 7 chr1 132928689 132928996 -149264668 - AluY SINE Alu -4 307 1 283 330 11 0 chr1 132930659 132930753 -149262911 + L2 LINE L2 2662 2756 -558 378 148 23 11 chr1 132931498 132931586 -149262078 + (TA)n Simple_repeat Simple_repeat 2 90 0 209 302 28 93 chr1 132931610 132931825 -149261839 - L2 LINE L2 -2775 539 339 482 305 124 65 chr1 132932104 132932741 -149260923 - L2 LINE L2 -3 3269 2580 229 274 0 41 chr1 132933299 132933372 -149260292 + CT-rich Low_complexity Low_complexity 4 73 0 268 288 0 0 chr1 132933496 132933562 -149260102 + tRNA-Ile-ATT tRNA tRNA 7 72 -5 397 259 7 82 chr1 132933866 132933980 -149259684 + MIR3 SINE MIR 54 156 -52 203 30 0 61 chr1 132933980 132934013 -149259651 + (ATTAG)n Simple_repeat Simple_repeat 2 32 0 397 259 7 82 chr1 132934013 132934045 -149259619 + MIR3 SINE MIR 156 189 -19 182 219 24 0 chr1 132934032 132934073 -149259591 + L2 LINE L2 3193 3234 -38 * 509 326 78 36 chr1 132934064 132934612 -149259052 - L2 LINE L2 -60 3212 2636 2499 81 0 0 chr1 132936795 132937104 -149256560 - AluY SINE Alu -2 309 1 590 200 36 36 chr1 132937192 132937357 -149256307 - MIR SINE MIR -30 232 68 1955 181 8 11 chr1 132937453 132937823 -149255841 - L1MB2 LINE L1 -3 6168 5800 506 281 65 20 chr1 132937939 132938185 -149255479 + L1M4 LINE L1 4044 4300 -1846 348 304 83 36 chr1 132938379 132938632 -149255032 - L1M4 LINE L1 -1114 5032 4768 898 94 8 0 chr1 132938653 132938780 -149254884 + FRAM SINE Alu 41 168 -8 3200 226 37 20 chr1 132938826 132939958 -149253706 - L1MB8 LINE L1 -74 6104 4960 2346 79 0 0 chr1 132941212 132941502 -149252162 - AluY SINE Alu -3 308 19 1275 129 32 5 chr1 132942592 132942809 -149250855 + L1PA12 LINE L1 5824 6046 -122 341 281 49 38 chr1 132943063 132943248 -149250416 + LTR33 LTR ERVL 335 521 0 601 206 131 12 chr1 132949360 132949575 -149244089 - MER106B DNA MER1_type 0 1059 2 204 250 0 92 chr1 132949641 132949837 -149243827 + A-rich Low_complexity Low_complexity 3 180 0 203 152 0 0 chr1 132950873 132950906 -149242758 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 329 277 14 50 chr1 132955466 132955607 -149238057 - MIR SINE MIR -1 261 126 2063 214 30 9 chr1 132957362 132957643 -149236021 + L1MA10 LINE L1 5863 6159 -175 261 0 0 0 chr1 132957643 132957672 -149235992 + (CA)n Simple_repeat Simple_repeat 2 30 0 2063 214 30 9 chr1 132957672 132957852 -149235812 + L1MA10 LINE L1 6159 6334 0 650 172 17 0 chr1 132957914 132958030 -149235634 + FLAM_C SINE Alu 1 118 -15 921 128 34 145 chr1 132958405 132958581 -149235083 + MER3 DNA MER1_type 2 147 -62 2244 85 3 24 chr1 132958581 132958876 -149234788 - AluSc SINE Alu -20 289 1 921 128 34 145 chr1 132958876 132958933 -149234731 + MER3 DNA MER1_type 147 209 0 283 148 66 0 chr1 132959011 132959072 -149234592 - L1P5 LINE L1 -705 5451 5387 1064 285 80 6 chr1 132959429 132959922 -149233742 + L1ME LINE L1 5221 5758 -404 7528 209 39 43 chr1 132960059 132961785 -149231879 + MLT1A1-int LTR MaLR 1 1735 0 1705 189 37 31 chr1 132961785 132962140 -149231524 + MLT1A1 LTR MaLR 1 357 -8 564 310 102 15 chr1 132962382 132962717 -149230947 - MER57B LTR ERV1 0 434 71 12739 153 22 9 chr1 132962728 132964816 -149228848 - L1M1 LINE L1 -3911 2937 828 2134 209 63 63 chr1 132964816 132965370 -149228294 + MLT2B3 LTR ERVL 1 554 0 12739 153 22 9 chr1 132965370 132965395 -149228269 - L1M1 LINE L1 -6020 828 805 332 191 67 22 chr1 132966683 132966772 -149226892 - MIR3 SINE MIR -53 155 63 409 328 98 41 chr1 132967092 132967461 -149226203 - L1MC/D LINE L1 -2154 5654 5265 37 52 0 0 chr1 132967538 132967596 -149226068 + AT_rich Low_complexity Low_complexity 1 58 0 2157 118 10 3 chr1 132968177 132968482 -149225182 + AluSx SINE Alu 1 307 -5 387 305 42 0 chr1 132968525 132968643 -149225021 - MIR SINE MIR -120 142 20 205 353 17 9 chr1 132969503 132969619 -149224045 - MIR SINE MIR -114 148 32 499 331 27 0 chr1 132969794 132969942 -149223722 - MIR3 SINE MIR -27 181 30 2586 90 23 0 chr1 132970692 132971036 -149222628 - L1PB1 LINE L1 -1 6150 5799 328 290 20 0 chr1 132971036 132971136 -149222528 + HAL1 LINE L1 1539 1640 -867 27 73 0 0 chr1 132971267 132971322 -149222342 + AT_rich Low_complexity Low_complexity 1 55 0 262 281 98 55 chr1 132971660 132971824 -149221840 - MER5A DNA MER1_type 0 189 19 368 244 95 0 chr1 132971855 132971954 -149221710 - MIR SINE MIR -67 141 47 1846 164 7 0 chr1 132972152 132972439 -149221225 - AluJo SINE Alu -12 300 12 185 62 0 31 chr1 132972456 132972488 -149221176 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 186 133 0 0 chr1 132972531 132972561 -149221103 + (TTA)n Simple_repeat Simple_repeat 1 30 0 3511 206 49 34 chr1 132972564 132973660 -149220004 - L1MB7 LINE L1 -26 6158 5042 237 341 93 0 chr1 132974297 132974426 -149219238 - MIR SINE MIR -73 189 49 1154 279 36 57 chr1 132974734 132974938 -149218726 - L1ME3 LINE L1 -1 6161 5954 2847 164 2 2 chr1 132974938 132975370 -149218294 - MSTB1 LTR MaLR 0 432 1 1154 279 36 57 chr1 132975370 132975425 -149218239 - L1ME3 LINE L1 -208 5954 5899 1888 122 38 3 chr1 132975425 132975712 -149217952 + AluSx SINE Alu 1 297 -15 1154 279 36 57 chr1 132975712 132976029 -149217635 - L1ME3 LINE L1 -263 5899 5596 596 281 108 32 chr1 132976189 132976866 -149216798 - L1ME3 LINE L1 -571 5593 4862 2024 62 4 0 chr1 132976895 132977136 -149216528 + L1PA6 LINE L1 5909 6150 -4 1040 285 103 4 chr1 132977966 132978450 -149215214 - L1ME3 LINE L1 -1286 4860 4329 1138 292 42 16 chr1 132978475 132978924 -149214740 - L1ME2 LINE L1 -13 6151 5691 2376 76 3 17 chr1 132978925 132979491 -149214173 + PABL_A LTR ERV1 1 660 0 320 250 185 0 chr1 132979491 132979599 -149214065 - L1ME2 LINE L1 -476 5690 5563 2024 151 3 0 chr1 132980542 132980841 -149212823 - AluSx SINE Alu -12 300 1 903 241 10 24 chr1 132981181 132981388 -149212276 + MER3 DNA MER1_type 5 208 -1 5158 41 0 1 chr1 132982584 132983324 -149210340 - L1PA4 LINE L1 -297 5858 5120 224 294 0 0 chr1 132983395 132983446 -149210218 + polypyrimidine Low_complexity Low_complexity 4 54 0 1823 224 47 9 chr1 132983609 132983996 -149209668 - L1ME3 LINE L1 -2 6160 5752 450 0 0 0 chr1 132983996 132984046 -149209618 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1823 224 47 9 chr1 132984046 132984109 -149209555 - L1ME3 LINE L1 -410 5752 5693 1192 126 0 33 chr1 132984109 132984292 -149209372 - L1PA8A LINE L1 0 6131 5955 6825 112 1 0 chr1 132984292 132985261 -149208403 - L1P LINE L1 -1380 4766 3797 8148 117 14 1 chr1 132985268 132986461 -149207203 - L1P3 LINE L1 -4734 2264 1030 874 183 0 0 chr1 132986471 132986613 -149207051 + L1PBa LINE L1 302 443 -6420 924 234 51 5 chr1 132986613 132986827 -149206837 - L1ME3 LINE L1 -461 5703 5480 4518 159 4 46 chr1 132986929 132987076 -149206588 + L1MB3 LINE L1 5182 5334 -849 3143 163 42 22 chr1 132987076 132987672 -149205992 + L1MA8 LINE L1 5684 6291 0 4518 159 4 46 chr1 132987672 132988402 -149205262 + L1MB3 LINE L1 5334 6040 -143 665 197 22 110 chr1 132988552 132988721 -149204943 + L1MB3 LINE L1 5972 6118 -65 2130 83 14 0 chr1 132988721 132988999 -149204665 + AluY SINE Alu 1 282 -29 665 197 22 110 chr1 132988999 132989057 -149204607 + L1MB3 LINE L1 6118 6179 -4 358 304 0 0 chr1 132989115 132989207 -149204457 + MIR3 SINE MIR 93 184 -24 597 257 62 26 chr1 132989236 132989462 -149204202 + MIR SINE MIR 8 241 -21 1754 115 4 15 chr1 132989501 132989762 -149203902 + AluSg SINE Alu 40 297 -13 274 280 180 30 chr1 132990644 132990744 -149202920 + L2 LINE L2 3197 3311 -2 2154 218 107 17 chr1 132991541 132992119 -149201545 - L1ME2 LINE L1 -10 6154 5525 206 306 48 0 chr1 132993080 132993142 -149200522 - MIR3 SINE MIR -6 202 138 282 291 16 16 chr1 132993667 132993794 -149199870 - L1MEc LINE L1 -4993 1391 1265 384 255 137 54 chr1 132993818 132994022 -149199642 - L1MEc LINE L1 -5187 1376 1156 330 303 76 0 chr1 132994025 132994170 -149199494 - L1MEc LINE L1 -5449 1114 959 1085 232 53 43 chr1 132994435 132994515 -149199149 + L1M4 LINE L1 4861 4939 -1207 5116 83 28 15 chr1 132994515 132995202 -149198462 + L1PA11 LINE L1 5477 6172 -2 1085 232 53 43 chr1 132995202 132995514 -149198150 + L1M4 LINE L1 4939 5257 -889 729 264 15 5 chr1 132995514 132995715 -149197949 + MLT2B1 LTR ERVL 1 203 -317 296 66 44 165 chr1 132995748 132995839 -149197825 + LTR66 LTR ERVL 359 438 -172 267 31 0 0 chr1 132995839 132995871 -149197793 + (CA)n Simple_repeat Simple_repeat 1 32 0 602 287 73 59 chr1 132997289 132997812 -149195852 + L1MC4 LINE L1 7098 7627 -415 2097 92 0 37 chr1 133000299 133000621 -149193043 + AluY SINE Alu 1 311 0 2107 133 0 3 chr1 133001280 133001649 -149192015 + AluSx SINE Alu 6 373 0 188 86 29 0 chr1 133002223 133002258 -149191406 + (TC)n Simple_repeat Simple_repeat 1 36 0 1559 199 3 7 chr1 133002258 133002545 -149191119 - AluJb SINE Alu -3 309 24 306 170 71 89 chr1 133005580 133005692 -149187972 + L1MB5 LINE L1 6056 6165 -9 411 293 7 14 chr1 133006638 133006785 -149186879 - MIR SINE MIR -21 241 96 1954 150 10 0 chr1 133006935 133007242 -149186422 - AluSg SINE Alu 0 310 1 205 214 126 39 chr1 133007310 133007413 -149186251 + L2 LINE L2 3160 3271 -1 267 282 26 13 chr1 133009584 133009662 -149184002 - MIR3 SINE MIR -48 160 82 376 119 17 0 chr1 133011535 133011594 -149182070 + MER53 DNA DNA 5 64 -125 271 191 63 0 chr1 133011598 133011661 -149182003 + L1MD2 LINE L1 6285 6351 -8 193 270 90 67 chr1 133012000 133012089 -149181575 - MIR SINE MIR -155 107 17 284 285 23 46 chr1 133012668 133012798 -149180866 - MIR3 SINE MIR -70 138 12 679 129 10 0 chr1 133064534 133064635 -149129029 + MER41E LTR ERV1 1 102 -410 303 268 33 37 chr1 133064830 133064954 -149128710 + MIR SINE MIR 4 105 -103 222 309 74 12 chr1 133064959 133065040 -149128624 - MIR3 SINE MIR -109 99 14 250 268 0 18 chr1 133065177 133065233 -149128431 + L2 LINE L2 3247 3301 -12 689 284 40 27 chr1 133066203 133066428 -149127236 - L3 LINE CR1 -23 1554 1327 291 316 10 0 chr1 133066708 133066806 -149126858 - MER5B DNA MER1_type -79 99 1 214 255 51 61 chr1 133067866 133067964 -149125700 - L2 LINE L2 -49 3264 3168 229 350 126 0 chr1 133069661 133069764 -149123900 + MER5B DNA MER1_type 1 116 -62 248 299 108 30 chr1 133070858 133071025 -149122639 - MIR SINE MIR -42 220 41 180 0 0 0 chr1 133072790 133072810 -149120854 + (CCG)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr1 133073202 133073225 -149120439 + GC_rich Low_complexity Low_complexity 1 23 0 195 294 24 47 chr1 133073547 133073632 -149120032 - L2 LINE L2 -1 3271 3189 196 337 11 11 chr1 133073663 133073752 -149119912 - L2 LINE L2 -208 3064 2976 559 275 80 9 chr1 133073764 133074009 -149119655 + L1ME3A LINE L1 5691 5949 -217 211 300 102 65 chr1 133074252 133074605 -149119059 - L2 LINE L2 -461 2853 2488 253 319 44 0 chr1 133075232 133075323 -149118341 + MARNA DNA Mariner 94 188 -398 2313 97 3 3 chr1 133075556 133075854 -149117810 + AluSq SINE Alu 1 298 -15 584 199 56 43 chr1 133076563 133076724 -149116940 - MIR SINE MIR -50 212 50 385 299 51 32 chr1 133076909 133077066 -149116598 - L2 LINE L2 -4 3268 3109 221 330 28 57 chr1 133077176 133077282 -149116382 + L2 LINE L2 3150 3252 -20 1806 130 56 32 chr1 133077475 133077814 -149115850 + THE1C LTR MaLR 2 348 -27 1966 162 0 10 chr1 133078458 133078761 -149114903 + AluJb SINE Alu 1 300 -12 205 269 15 15 chr1 133079723 133079790 -149113874 + GA-rich Low_complexity Low_complexity 1 67 0 537 264 101 17 chr1 133080105 133080283 -149113381 - MIR SINE MIR -30 232 40 2306 95 0 0 chr1 133080830 133081140 -149112524 - AluSx SINE Alu 0 310 1 197 280 67 63 chr1 133081656 133081895 -149111769 + L2 LINE L2 1427 1666 -1648 459 0 0 0 chr1 133081912 133081963 -149111701 + (CA)n Simple_repeat Simple_repeat 2 52 0 302 345 128 34 chr1 133082074 133082309 -149111355 - L2 LINE L2 -17 3255 2999 931 210 44 6 chr1 133082475 133082656 -149111008 - MER5A DNA MER1_type -1 188 1 390 316 30 15 chr1 133082663 133082796 -149110868 + L2 LINE L2 1846 1980 -1334 419 323 85 33 chr1 133082810 133083141 -149110523 + L2 LINE L2 2625 2972 -342 2560 137 33 35 chr1 133083206 133083555 -149110109 + MSTB LTR MaLR 3 352 -74 1781 179 0 3 chr1 133083555 133083863 -149109801 - AluSx SINE Alu -5 307 1 2560 137 33 35 chr1 133083863 133083937 -149109727 + MSTB LTR MaLR 352 425 -1 579 294 95 30 chr1 133084897 133085128 -149108536 - MIR SINE MIR -12 250 5 214 344 0 0 chr1 133085153 133085214 -149108450 - MIR SINE MIR -115 93 33 2331 77 0 0 chr1 133086014 133086322 -149107342 - AluY SINE Alu 0 308 1 220 226 0 19 chr1 133086867 133086920 -149106744 + MIR SINE MIR 192 243 -19 585 197 80 108 chr1 133087054 133087154 -149106510 - MER106B DNA MER1_type 0 1059 958 3256 156 11 25 chr1 133087154 133087681 -149105983 + MLT2B1 LTR ERVL 1 520 0 585 197 80 108 chr1 133087681 133087793 -149105871 - MER106B DNA MER1_type -101 958 30 183 100 0 0 chr1 133088445 133088475 -149105189 + (CCTAA)n Simple_repeat Simple_repeat 1 30 0 191 233 23 0 chr1 133088818 133088861 -149104803 - MIR SINE MIR -10 252 209 336 311 118 78 chr1 133089336 133089583 -149104081 - L2 LINE L2 -31 3241 3005 1399 218 213 19 chr1 133089583 133090006 -149103658 + MLT1D LTR MaLR 1 505 0 336 311 118 78 chr1 133090006 133090579 -149103085 - L2 LINE L2 -267 3005 2392 289 267 12 0 chr1 133090751 133090837 -149102827 - L2 LINE L2 0 3313 3227 188 78 255 39 chr1 133091053 133091104 -149102560 - MER5C DNA MER1_type 0 324 263 247 170 0 0 chr1 133091251 133091298 -149102366 - MER5C DNA MER1_type -202 122 76 6897 86 19 0 chr1 133091419 133092487 -149101177 - L1PA11 LINE L1 0 6174 5089 342 336 209 11 chr1 133093093 133093542 -149100122 + L2 LINE L2 2079 2616 -698 2597 44 0 0 chr1 133094248 133094544 -149099120 + AluY SINE Alu 1 296 -15 293 322 94 28 chr1 133094600 133094780 -149098884 - L2 LINE L2 -188 3084 2893 219 352 19 19 chr1 133094878 133094983 -149098681 - L2 LINE L2 -541 2773 2669 218 396 44 0 chr1 133095003 133095094 -149098570 + L2 LINE L2 3128 3222 -50 1388 132 0 15 chr1 133095126 133095330 -149098334 + AluSg/x SINE Alu 86 286 -26 425 281 100 0 chr1 133095372 133095532 -149098132 + MIR3 SINE MIR 30 205 -3 180 273 78 39 chr1 133096446 133096523 -149097141 + L2 LINE L2 1697 1776 -1538 2142 73 0 7 chr1 133097178 133097451 -149096213 - AluSc SINE Alu -11 298 28 793 237 118 28 chr1 133098375 133098586 -149095078 + MIR SINE MIR 23 252 -10 2033 142 0 3 chr1 133098735 133099038 -149094626 + AluSx SINE Alu 3 304 -8 195 246 0 0 chr1 133099297 133099354 -149094310 + (TA)n Simple_repeat Simple_repeat 2 58 0 329 273 0 0 chr1 133100267 133100333 -149093331 + L2 LINE L2 3207 3272 0 2073 107 30 13 chr1 133100630 133100928 -149092736 - AluSx SINE Alu -9 303 1 352 270 35 9 chr1 133101463 133101578 -149092086 + MIR SINE MIR 63 180 -82 700 260 65 48 chr1 133101694 133101986 -149091678 - L2 LINE L2 -4 3309 3013 231 309 173 18 chr1 133103117 133103227 -149090437 + L2 LINE L2 1773 1899 -1415 348 265 31 31 chr1 133104304 133104402 -149089262 - L2 LINE L2 -18 3295 3198 608 313 122 13 chr1 133104640 133104870 -149088794 + MIR SINE MIR 8 262 0 2571 43 0 7 chr1 133105081 133105385 -149088279 + AluY SINE Alu 1 302 -9 2300 115 0 0 chr1 133106459 133106771 -149086893 + AluSx SINE Alu 1 312 0 238 261 11 45 chr1 133107103 133107191 -149086473 - L2 LINE L2 0 3313 3229 457 221 62 122 chr1 133108591 133108944 -149084720 - L2 LINE L2 0 3313 2982 200 266 16 16 chr1 133108956 133109020 -149084644 + MIR SINE MIR 90 153 -109 387 0 0 0 chr1 133109444 133109487 -149084177 + (CA)n Simple_repeat Simple_repeat 2 44 0 545 299 91 23 chr1 133109662 133109883 -149083781 + MIR SINE MIR 21 256 -6 330 267 23 12 chr1 133110679 133110765 -149082899 + L2 LINE L2 3227 3313 0 2369 100 0 0 chr1 133112608 133112907 -149080757 + AluSg SINE Alu 1 299 -11 201 39 0 0 chr1 133113596 133113622 -149080042 + (TTA)n Simple_repeat Simple_repeat 3 28 0 4407 29 0 0 chr1 133113622 133114133 -149079531 - L1PA5 LINE L1 -18 6136 5626 1817 143 26 0 chr1 133114514 133114780 -149078884 + AluSx SINE Alu 1 273 -39 1017 153 0 0 chr1 133114792 133114968 -149078696 + GA-rich Low_complexity Low_complexity 4 179 0 2281 97 7 0 chr1 133115168 133115467 -149078197 + AluY SINE Alu 1 301 -10 2631 77 14 0 chr1 133115800 133116150 -149077514 + THE1A LTR MaLR 1 355 0 10456 78 14 10 chr1 133116417 133117881 -149075783 + HERVL-A1 LTR ERVL 4185 5654 0 2866 78 18 10 chr1 133117881 133118278 -149075386 + MLT2A1 LTR ERVL 1 400 -44 277 98 78 0 chr1 133118339 133118390 -149075274 + MLT2A1 LTR ERVL 390 444 0 286 389 92 22 chr1 133118743 133119147 -149074517 - L2 LINE L2 -339 2975 2544 1961 134 3 52 chr1 133119696 133120003 -149073661 - AluJo SINE Alu -20 292 1 21 36 0 0 chr1 133121211 133121239 -149072425 + AT_rich Low_complexity Low_complexity 1 28 0 368 292 159 19 chr1 133122108 133122291 -149071373 + MIR SINE MIR 4 206 -56 2190 102 3 10 chr1 133122324 133122618 -149071046 + AluSx SINE Alu 1 292 -20 1522 198 59 6 chr1 133123235 133123559 -149070105 + MER58B DNA MER1_type 1 341 0 1058 255 133 42 chr1 133123679 133124188 -149069476 - L2 LINE L2 0 3313 2757 198 322 110 53 chr1 133124333 133124877 -149068787 + L2 LINE L2 1680 2254 -1060 308 254 14 0 chr1 133125238 133125309 -149068355 - L3 LINE CR1 -54 1523 1452 835 221 179 0 chr1 133125379 133125569 -149068095 + MIR SINE MIR 18 241 -21 2798 148 39 0 chr1 133125683 133126197 -149067467 + L1MB7 LINE L1 5631 6164 -20 430 333 95 9 chr1 133126211 133126421 -149067243 - L3 LINE CR1 -219 1358 1131 636 293 95 17 chr1 133126501 133126650 -149067014 - MIR SINE MIR -11 251 76 2550 60 0 0 chr1 133126650 133126952 -149066712 + AluY SINE Alu 1 302 -9 636 293 95 17 chr1 133126952 133127034 -149066630 - MIR SINE MIR -186 76 2 480 267 24 164 chr1 133127034 133127490 -149066174 - L3 LINE CR1 -433 1144 754 216 280 170 0 chr1 133127500 133127600 -149066064 - MIR3 SINE MIR -3 205 89 189 247 202 11 chr1 133127725 133127814 -149065850 - L3 LINE CR1 -1034 543 438 203 245 61 0 chr1 133127832 133127881 -149065783 + L2 LINE L2 2688 2739 -575 680 133 15 74 chr1 133129199 133129334 -149064330 + FLAM_C SINE Alu 2 128 -5 23 0 0 0 chr1 133129907 133129930 -149063734 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr1 133131077 133131104 -149062560 + (CA)n Simple_repeat Simple_repeat 1 27 0 404 356 206 17 chr1 133132074 133132419 -149061245 + L2 LINE L2 2838 3247 -25 323 401 12 6 chr1 133133126 133133298 -149060366 + MIR3 SINE MIR 34 206 -2 210 299 37 47 chr1 133135026 133135133 -149058531 + L3 LINE CR1 1114 1219 -358 210 276 17 17 chr1 133135507 133135565 -149058099 + L2 LINE L2 3243 3300 -13 555 133 4 20 chr1 133136817 133137053 -149056611 + AluJb SINE Alu 1 273 -39 191 346 39 13 chr1 133137772 133137850 -149055814 - MIR SINE MIR -63 145 66 943 189 59 0 chr1 133137981 133138203 -149055461 - MER96B DNA MER1_type? -182 235 1 22 56 0 0 chr1 133139088 133139124 -149054540 + AT_rich Low_complexity Low_complexity 1 36 0 439 306 117 49 chr1 133139318 133139746 -149053918 + L1ME LINE L1 895 1351 -5596 400 304 50 53 chr1 133139939 133140229 -149053435 + L1ME LINE L1 1343 1526 -5333 1776 83 0 4 chr1 133141412 133141640 -149052024 - AluY SINE Alu -6 305 79 4737 52 0 5 chr1 133141927 133142522 -149051142 - L1PA8 LINE L1 -5 6167 5576 2140 146 0 0 chr1 133143806 133144115 -149049549 - AluSg SINE Alu -1 309 1 688 237 147 22 chr1 133145734 133145966 -149047698 - MIR SINE MIR 0 262 2 252 267 67 38 chr1 133146006 133146111 -149047553 - MIR SINE MIR -108 154 47 28 29 0 0 chr1 133146410 133146445 -149047219 + AT_rich Low_complexity Low_complexity 1 35 0 257 250 186 32 chr1 133146527 133146651 -149047013 + MIR3 SINE MIR 35 177 -31 856 212 41 6 chr1 133147013 133147183 -149046481 - MER5A DNA MER1_type -4 185 10 2791 173 109 36 chr1 133147288 133147536 -149046128 + L1MA7 LINE L1 5505 5733 -558 1881 138 50 7 chr1 133147536 133147833 -149045831 + AluSg SINE Alu 1 310 0 2791 173 109 36 chr1 133147833 133148308 -149045356 + L1MA7 LINE L1 5733 6281 -10 213 94 0 0 chr1 133148728 133148760 -149044904 + (A)n Simple_repeat Simple_repeat 1 32 0 908 332 148 12 chr1 133148877 133149434 -149044230 - L2 LINE L2 -8 3305 2692 301 302 12 15 chr1 133150180 133150272 -149043392 + MIR SINE MIR 4 93 -115 2078 165 83 15 chr1 133150281 133150680 -149042984 + MSTB LTR MaLR 1 426 0 315 221 74 74 chr1 133150779 133150901 -149042763 - L2 LINE L2 -9 3304 3183 386 379 71 53 chr1 133152682 133153004 -149040660 + L2 LINE L2 2923 3250 -22 2224 40 87 7 chr1 133153802 133154078 -149039586 - AluY SINE Alu -13 298 1 25 0 0 0 chr1 133154168 133154193 -149039471 + AT_rich Low_complexity Low_complexity 1 25 0 1057 8 0 0 chr1 133154833 133154956 -149038708 - L1PA4 LINE L1 -1 6154 6032 2488 64 0 16 chr1 133155148 133155461 -149038203 + AluY SINE Alu 1 308 -3 216 0 0 0 chr1 133155461 133155485 -149038179 + (TA)n Simple_repeat Simple_repeat 2 25 0 460 168 34 40 chr1 133156243 133156392 -149037272 + GA-rich Low_complexity Low_complexity 2 149 0 456 267 46 23 chr1 133157702 133157889 -149035775 - MIR SINE MIR -65 143 5 26 88 0 0 chr1 133159043 133159111 -149034553 + AT_rich Low_complexity Low_complexity 1 68 0 339 221 97 48 chr1 133160238 133160383 -149033281 + Charlie7 DNA MER1_type 1 152 -2460 247 342 18 26 chr1 133160702 133160816 -149032848 + MIR SINE MIR 19 131 -77 185 191 119 0 chr1 133161460 133161502 -149032162 + MIR SINE MIR 183 229 -33 1933 129 3 11 chr1 133161791 133162078 -149031586 + AluSx SINE Alu 1 285 -27 2157 113 0 13 chr1 133162196 133162497 -149031167 - AluSg SINE Alu -13 297 1 676 263 88 12 chr1 133162586 133162826 -149030838 + MER112 DNA MER1_type 2 259 -1 471 235 107 40 chr1 133162832 133162876 -149030788 + MIR SINE MIR 17 57 -205 1985 153 3 0 chr1 133162876 133163177 -149030487 - AluJo SINE Alu -10 302 1 471 235 107 40 chr1 133163177 133163348 -149030316 + MIR SINE MIR 57 248 -14 343 293 75 9 chr1 133163513 133163619 -149030045 + L2 LINE L2 3200 3312 -1 854 218 39 0 chr1 133163728 133163907 -149029757 + MER5A DNA MER1_type 1 186 -3 438 20 0 0 chr1 133165658 133165709 -149027955 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr1 133165742 133165772 -149027892 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 133165837 133165866 -149027798 + AT_rich Low_complexity Low_complexity 1 29 0 354 336 17 8 chr1 133167162 133167281 -149026383 + MIR SINE MIR 31 141 -67 24 32 0 0 chr1 133167363 133167394 -149026270 + AT_rich Low_complexity Low_complexity 1 31 0 233 185 62 31 chr1 133168175 133168240 -149025424 + MER69 DNA AcHobo 1 67 -110 488 288 127 15 chr1 133168240 133168445 -149025219 - MIR SINE MIR -28 234 7 202 285 33 55 chr1 133169463 133169567 -149024097 + MIR SINE MIR 15 116 -92 217 214 0 24 chr1 133169681 133169723 -149023941 + L2 LINE L2 3199 3239 -74 439 224 126 42 chr1 133170497 133170640 -149023024 + MIR3 SINE MIR 7 161 -47 1193 167 9 0 chr1 133171006 133171221 -149022443 - Tigger1 DNA MER2_type 0 2418 2202 733 178 0 43 chr1 133171210 133171373 -149022291 - Tigger1 DNA MER2_type -2261 157 2 * 595 309 25 0 chr1 133171605 133171806 -149021858 - MIR SINE MIR 0 262 57 374 313 188 6 chr1 133172218 133172378 -149021286 + MIR SINE MIR 22 210 -52 * 405 358 68 18 chr1 133172370 133172591 -149021073 + MIR SINE MIR 5 236 -26 2391 77 0 3 chr1 133172643 133172942 -149020722 + AluSp SINE Alu 1 298 -15 197 244 24 85 chr1 133172953 133173035 -149020629 + MIR SINE MIR 53 129 -79 437 276 110 18 chr1 133174496 133174724 -149018940 + L1MC/D LINE L1 5254 5502 -2306 209 148 0 19 chr1 133174745 133174799 -149018865 + (TA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr1 133175326 133175349 -149018315 + AT_rich Low_complexity Low_complexity 1 23 0 569 167 0 0 chr1 133176003 133176093 -149017571 + FLAM_A SINE Alu 28 117 -25 189 0 0 0 chr1 133176096 133176117 -149017547 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 818 294 13 13 chr1 133176832 133177067 -149016597 + MIR SINE MIR 7 241 -21 751 179 45 17 chr1 133177797 133177976 -149015688 - MER53 DNA DNA -5 184 1 219 339 73 37 chr1 133179073 133179291 -149014373 + L2 LINE L2 1984 2209 -1105 394 231 14 157 chr1 133179346 133179405 -149014259 + MIR SINE MIR 66 132 -130 2335 78 3 0 chr1 133179405 133179701 -149013963 - AluY SINE Alu -14 297 1 394 231 14 157 chr1 133179701 133179754 -149013910 + MIR SINE MIR 132 191 -71 414 0 0 0 chr1 133179754 133179800 -149013864 + (TA)n Simple_repeat Simple_repeat 1 46 0 394 231 14 157 chr1 133179800 133179902 -149013762 + MIR SINE MIR 191 250 -12 494 338 33 36 chr1 133179921 133180223 -149013441 + L2 LINE L2 2211 2511 -803 619 321 72 7 chr1 133180442 133180735 -149012929 + MLT1I LTR MaLR 98 409 0 265 325 39 31 chr1 133180735 133180983 -149012681 - Charlie4 DNA MER1_type -1133 828 579 963 127 87 0 chr1 133181473 133181646 -149012018 - MER20 DNA MER1_type -4 215 28 605 269 55 24 chr1 133181861 133182114 -149011550 + MIR SINE MIR 2 262 0 219 225 51 70 chr1 133182416 133182588 -149011076 + MIR SINE MIR 76 237 -25 2098 113 10 0 chr1 133182591 133182883 -149010781 + AluSx SINE Alu 1 295 -17 243 332 105 58 chr1 133183981 133184306 -149009358 - L2 LINE L2 -37 3235 2896 201 348 72 0 chr1 133184501 133184570 -149009094 + MIR SINE MIR 28 101 -107 240 262 65 37 chr1 133184614 133184721 -149008943 - MIR SINE MIR -10 252 143 192 231 0 0 chr1 133185458 133185510 -149008154 + (TG)n Simple_repeat Simple_repeat 1 52 0 433 339 83 0 chr1 133185810 133185978 -149007686 + MIR SINE MIR 3 184 -78 254 384 32 0 chr1 133186031 133186156 -149007508 - MIR3 SINE MIR -66 142 14 370 354 28 7 chr1 133186675 133186819 -149006845 + MIR3 SINE MIR 30 176 -32 292 307 151 44 chr1 133186804 133187009 -149006655 - MIR SINE MIR -13 249 23 * 1801 158 3 7 chr1 133187268 133187552 -149006112 + AluJb SINE Alu 3 285 -27 222 37 0 0 chr1 133187552 133187579 -149006085 + (CATA)n Simple_repeat Simple_repeat 2 28 0 397 241 25 0 chr1 133188073 133188152 -149005512 + L2 LINE L2 3223 3303 -10 2079 81 67 7 chr1 133188152 133188435 -149005229 + AluY SINE Alu 1 300 -11 212 329 133 35 chr1 133188500 133188643 -149005021 + L2 LINE L2 3111 3267 -5 725 283 21 34 chr1 133189645 133189882 -149003782 - MIR SINE MIR -28 234 1 2063 128 27 0 chr1 133190014 133190311 -149003353 - AluSx SINE Alu -7 305 1 267 323 24 47 chr1 133190501 133190628 -149003036 - MIR SINE MIR -56 152 29 418 268 43 65 chr1 133191304 133191535 -149002129 - L1ME4a LINE L1 -65 6056 5831 311 184 29 0 chr1 133192423 133192499 -149001165 - MIR SINE MIR -74 188 111 1745 142 103 16 chr1 133192510 133192820 -149000844 + MER1B DNA MER1_type 1 337 0 309 278 34 80 chr1 133192828 133193004 -149000660 - L1ME4a LINE L1 -19 6102 5935 2430 173 11 17 chr1 133193069 133193537 -149000127 - MLT1C LTR MaLR -2 465 1 579 296 109 9 chr1 133193991 133194061 -148999603 + MIR SINE MIR 2 64 -198 2813 152 19 6 chr1 133194061 133194574 -148999090 - L1MC1 LINE L1 0 6333 5814 579 296 109 9 chr1 133194574 133194723 -148998941 + MIR SINE MIR 64 243 -19 836 306 101 61 chr1 133194746 133195813 -148997851 - L2 LINE L2 0 3313 1603 25 65 0 0 chr1 133195967 133196013 -148997651 + AT_rich Low_complexity Low_complexity 1 46 0 2237 239 117 24 chr1 133196481 133197242 -148996422 - HAL1 LINE L1 -10 2497 1666 1090 264 97 20 chr1 133197302 133197643 -148996021 + LTR16C LTR ERVL 78 444 -47 477 224 118 16 chr1 133197648 133197894 -148995770 - HAL1 LINE L1 -1327 1180 910 1257 221 75 55 chr1 133198003 133198372 -148995292 - HAL1 LINE L1 -1961 546 164 2148 103 0 24 chr1 133198372 133198687 -148994977 - AluSx SINE Alu 0 308 1 1257 221 75 55 chr1 133198687 133198769 -148994895 - HAL1 LINE L1 -2343 164 85 266 211 97 35 chr1 133198858 133198972 -148994692 + L1MC4a LINE L1 6044 6164 -1644 265 203 109 0 chr1 133198978 133199042 -148994622 - HAL1 LINE L1 -2436 71 1 1995 118 0 91 chr1 133199300 133199630 -148994034 + AluSx SINE Alu 1 300 -12 336 120 0 22 chr1 133199635 133199713 -148993951 + Alu SINE Alu 243 302 0 1127 245 55 56 chr1 133199717 133200120 -148993544 + L1MC4a LINE L1 5274 5676 -658 689 100 60 0 chr1 133200120 133200220 -148993444 + U6 snRNA snRNA 2 107 0 1127 245 55 56 chr1 133200220 133200375 -148993289 + L1MC4a LINE L1 5676 5390 -944 1815 165 10 0 chr1 133200375 133200678 -148992986 + AluJo SINE Alu 1 306 -6 1127 245 55 56 chr1 133200678 133200758 -148992906 + L1MC4a LINE L1 5389 5468 -866 956 282 74 58 chr1 133200999 133201446 -148992218 - LTR67 LTR ERVL -3 554 101 200 344 8 56 chr1 133201678 133201803 -148991861 - MIR3 SINE MIR -7 201 83 36 62 0 0 chr1 133201998 133202062 -148991602 + AT_rich Low_complexity Low_complexity 1 64 0 243 292 81 19 chr1 133202107 133202268 -148991396 - L1ME4a LINE L1 -96 6025 5855 349 243 44 88 chr1 133202460 133202596 -148991068 - MIR3 SINE MIR -21 187 58 269 227 168 25 chr1 133203244 133203363 -148990301 - Charlie7 DNA MER1_type -2472 140 5 428 303 81 4 chr1 133203752 133203925 -148989739 + MIR SINE MIR 8 191 -17 603 234 54 29 chr1 133203935 133204144 -148989520 - MIR SINE MIR -46 216 8 2111 117 3 29 chr1 133204254 133204563 -148989101 - AluSg SINE Alu -9 301 1 186 306 180 0 chr1 133204709 133204820 -148988844 + MIR3 SINE MIR 62 192 -16 524 261 75 6 chr1 133205790 133205951 -148987713 - MIR3 SINE MIR -8 200 29 21 0 0 0 chr1 133205994 133206015 -148987649 + AT_rich Low_complexity Low_complexity 1 21 0 634 242 101 63 chr1 133206101 133206337 -148987327 - MIR SINE MIR -10 252 4 1246 258 83 34 chr1 133206415 133207004 -148986660 - L2 LINE L2 0 3313 2699 5560 146 19 14 chr1 133207015 133208518 -148985146 - L1PB3 LINE L1 -2 6152 4643 768 265 15 15 chr1 133208519 133208715 -148984949 - L2 LINE L2 -602 2712 2517 254 312 75 5 chr1 133208754 133208940 -148984724 - L1ME4a LINE L1 -353 5768 5570 4135 163 51 31 chr1 133209603 133211133 -148982531 + L1MB7 LINE L1 4635 6184 0 2368 83 10 13 chr1 133211814 133212128 -148981536 - AluSq SINE Alu 0 313 1 23 0 0 0 chr1 133212128 133212151 -148981513 + AT_rich Low_complexity Low_complexity 1 23 0 5111 126 14 43 chr1 133212151 133212830 -148980834 - L1PA16 LINE L1 -9 6157 5460 2187 130 0 0 chr1 133212830 133213129 -148980535 - AluSx SINE Alu -13 299 1 5111 126 14 43 chr1 133213129 133213305 -148980359 - L1PA16 LINE L1 -706 5460 5323 1939 149 7 0 chr1 133213305 133213612 -148980052 - AluSx SINE Alu 0 309 1 5111 126 14 43 chr1 133213612 133213712 -148979952 - L1PA16 LINE L1 -843 5323 5222 181 307 93 13 chr1 133214132 133214207 -148979457 - MIR3 SINE MIR -40 168 88 22 0 0 0 chr1 163215095 163215117 -118978547 + GC_rich Low_complexity Low_complexity 1 22 0 3237 33 0 14 chr1 163215745 163216167 -118977497 - L1P LINE L1 -1132 5014 4599 * 3559 16 0 0 chr1 163216163 163216590 -118977074 + L1HS LINE L1 5729 6155 0 195 42 0 0 chr1 163216592 163216616 -118977048 + (A)n Simple_repeat Simple_repeat 1 24 0 326 264 0 11 chr1 163216641 163216732 -118976932 + L1MC4 LINE L1 6606 6695 -1347 819 192 19 0 chr1 163217037 163217193 -118976471 - AluJ SINE Alu -14 298 140 324 195 13 13 chr1 163217211 163217288 -118976376 + MER4B-int LTR ERV1 5766 5842 -916 1818 122 93 0 chr1 163217323 163217593 -118976071 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 163218558 163218579 -118975085 + GC_rich Low_complexity Low_complexity 1 21 0 288 217 17 0 chr1 163220061 163220121 -118973543 - MIR3 SINE MIR -47 161 101 777 169 0 0 chr1 163220250 163220380 -118973284 + AluJb SINE Alu 168 297 -15 341 136 0 0 chr1 163220817 163220878 -118972786 - FLAM SINE Alu -2 131 78 579 244 157 49 chr1 163220918 163221035 -118972629 + L1ME4a LINE L1 4842 4945 -1201 1968 153 3 0 chr1 163221035 163221336 -118972328 + AluJb SINE Alu 1 302 -10 579 244 157 49 chr1 163221336 163221489 -118972175 + L1ME4a LINE L1 4945 5080 -1066 1792 168 3 7 chr1 163221489 163221787 -118971877 + AluJb SINE Alu 1 297 -15 579 244 157 49 chr1 163221787 163221962 -118971702 + L1ME4a LINE L1 5080 5336 -810 1897 110 38 0 chr1 163222733 163223038 -118970626 - AluSx SINE Alu 0 325 11 528 276 71 41 chr1 163223673 163223756 -118969908 + L1M4 LINE L1 3030 3109 -3037 2049 121 0 13 chr1 163223756 163224063 -118969601 + AluSx SINE Alu 1 303 -9 528 276 71 41 chr1 163224063 163224414 -118969250 + L1M4 LINE L1 3109 3477 -2669 1525 126 20 0 chr1 163224563 163224817 -118968847 - L1MC2 LINE L1 -365 5979 5721 2191 133 3 0 chr1 163224824 163225181 -118968483 - AluSx SINE Alu 0 358 1 527 186 0 0 chr1 163225430 163225532 -118968132 - AluJb SINE Alu -3 309 208 1336 104 6 6 chr1 163226010 163226192 -118967472 - AluSp SINE Alu -14 299 118 211 304 29 0 chr1 163226660 163226729 -118966935 - MER5B DNA MER1_type -10 168 98 1932 95 0 11 chr1 163226798 163227062 -118966602 + AluSx SINE Alu 1 261 -51 21 0 0 0 chr1 163227665 163227686 -118965978 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 163228009 163228034 -118965630 + AT_rich Low_complexity Low_complexity 1 25 0 441 276 136 47 chr1 163228113 163228540 -118965124 + L1ME4a LINE L1 5409 5873 -248 998 295 89 52 chr1 163228553 163229601 -118964063 + L1MEd LINE L1 2 1088 -5031 322 288 40 23 chr1 163229792 163229969 -118963695 + L1M4 LINE L1 3521 3700 -2446 308 275 25 0 chr1 163230492 163230572 -118963092 + MER81 DNA DNA 1 82 -32 340 36 0 54 chr1 163231160 163231216 -118962448 + (TTTC)n Simple_repeat Simple_repeat 4 56 0 407 19 0 19 chr1 163231371 163231424 -118962240 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1016 190 0 0 chr1 163231424 163231603 -118962061 - FRAM SINE Alu 0 176 1 494 227 151 8 chr1 163231639 163231758 -118961906 + MER5B DNA MER1_type 2 137 -41 2345 113 22 19 chr1 163231839 163232202 -118961462 - THE1B LTR MaLR 0 364 1 398 208 118 62 chr1 163232330 163232474 -118961190 + MER5B DNA MER1_type 22 173 -5 282 209 45 0 chr1 163233398 163233465 -118960199 - ERVL LTR ERVL -469 5295 5226 737 183 21 18 chr1 163233528 163233812 -118959852 - L1MC2 LINE L1 -2 6342 5961 1460 138 20 0 chr1 163234575 163234829 -118958835 - L1MC2 LINE L1 -365 5979 5721 1275 132 6 0 chr1 163234836 163235051 -118958613 - AluSg/x SINE Alu 0 343 128 821 314 85 54 chr1 163235296 163236267 -118957397 - ERVL LTR ERVL -779 4875 3824 2203 148 0 0 chr1 163236267 163236577 -118957087 - AluSx SINE Alu -2 310 1 821 314 85 54 chr1 163236577 163236833 -118956831 - ERVL LTR ERVL -1830 3824 3577 2037 132 3 6 chr1 163237316 163237627 -118956037 + AluSg SINE Alu 1 310 0 303 82 90 8 chr1 163238306 163238428 -118955236 + (TA)n Simple_repeat Simple_repeat 1 132 0 2251 100 3 0 chr1 163238428 163238717 -118954947 - AluSp SINE Alu -23 290 1 530 186 0 0 chr1 163238966 163239068 -118954596 - AluJb SINE Alu -3 309 208 1352 132 0 5 chr1 163239528 163239725 -118953939 - AluSp SINE Alu 0 313 118 221 296 28 0 chr1 163240193 163240264 -118953400 - MER5B DNA MER1_type -10 168 96 2320 78 10 3 chr1 163240349 163240642 -118953022 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr1 163241182 163241203 -118952461 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 163241523 163241548 -118952116 + AT_rich Low_complexity Low_complexity 1 25 0 446 269 155 19 chr1 163241627 163241898 -118951766 + L1ME LINE L1 5409 5716 -405 1069 295 82 51 chr1 163242067 163243121 -118950543 + L1MEd LINE L1 2 1088 -5031 725 301 39 18 chr1 163243312 163243770 -118949894 + L1M4 LINE L1 3521 3988 -2158 363 183 135 29 chr1 163243783 163243887 -118949777 - LTR33A LTR ERVL -24 499 385 36 0 0 0 chr1 163243887 163243923 -118949741 + AT_rich Low_complexity Low_complexity 1 36 0 302 309 21 0 chr1 163244626 163244723 -118948941 + MER81 DNA DNA 1 99 -15 947 128 11 11 chr1 163245302 163245482 -118948182 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 261 54 0 27 chr1 163245487 163245524 -118948140 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 990 188 11 0 chr1 163245524 163245700 -118947964 - AluJo SINE Alu -1 311 134 509 219 151 8 chr1 163245736 163245855 -118947809 + MER5B DNA MER1_type 2 137 -41 2320 116 22 19 chr1 163245936 163246299 -118947365 - THE1B LTR MaLR 0 364 1 398 208 118 62 chr1 163246427 163246571 -118947093 + MER5B DNA MER1_type 22 173 -5 871 130 0 0 chr1 163247685 163247800 -118945864 - AluJo SINE Alu -182 130 16 23 0 0 0 chr1 163247883 163247906 -118945758 + AT_rich Low_complexity Low_complexity 1 23 0 751 292 101 43 chr1 163248322 163248686 -118944978 + L1ME4a LINE L1 5554 5960 -161 503 135 22 0 chr1 163248686 163248775 -118944889 - L1MA6 LINE L1 0 6300 6210 751 292 101 43 chr1 163248775 163248947 -118944717 + L1ME4a LINE L1 5960 6121 0 1754 187 32 9 chr1 163249758 163250106 -118943558 - MLT1A1 LTR MaLR 0 365 10 377 320 117 18 chr1 163250422 163250644 -118943020 - MIR SINE MIR 0 262 19 7645 53 1 8 chr1 163251202 163252950 -118940714 + L1PA5 LINE L1 4409 6150 -4 738 170 118 26 chr1 163253022 163253175 -118940489 - FAM SINE Alu -8 167 1 13311 129 32 85 chr1 163253500 163256367 -118937297 - Tigger2 DNA MER2_type -2 2716 2 1503 182 44 3 chr1 163256369 163256687 -118936977 + MER46B DNA MER2_type 23 228 -8 551 232 131 12 chr1 163259026 163259194 -118934470 + MER5A DNA MER1_type 2 189 0 2236 111 0 0 chr1 163260966 163261263 -118932401 - AluSq SINE Alu -16 297 1 1988 146 7 0 chr1 163263484 163263778 -118929886 - AluSx SINE Alu -16 296 1 2082 139 3 0 chr1 163264529 163264830 -118928834 - AluSx SINE Alu -10 302 1 23 0 0 0 chr1 163264840 163264863 -118928801 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr1 163267455 163267498 -118926166 + AT_rich Low_complexity Low_complexity 1 43 0 503 196 0 37 chr1 163267846 163267953 -118925711 - AluJo SINE Alu -176 136 34 332 355 16 9 chr1 163268418 163268555 -118925109 + MIR SINE MIR 4 139 -69 232 274 82 0 chr1 163268752 163268825 -118924839 - L2 LINE L2 -1 3271 3193 190 337 81 0 chr1 163270112 163270198 -118923466 + L3 LINE CR1 1470 1562 -15 613 273 40 11 chr1 163270381 163270557 -118923107 - MIR SINE MIR 0 262 82 389 264 0 22 chr1 163270557 163270648 -118923016 + L1MC4 LINE L1 6615 6703 -1339 360 248 97 62 chr1 163270580 163270725 -118922939 - L1MC3 LINE L1 -1137 6648 6499 * 2362 70 0 0 chr1 163270739 163271037 -118922627 - AluY SINE Alu -7 304 7 284 284 43 7 chr1 163271117 163271258 -118922406 - L1M4 LINE L1 -3797 2349 2204 1992 119 3 3 chr1 163271520 163271815 -118921849 - AluSq SINE Alu -18 295 1 1908 138 0 7 chr1 163272055 163272387 -118921277 - AluSx SINE Alu 0 312 1 704 256 41 56 chr1 163272715 163272985 -118920679 + L2 LINE L2 3044 3309 -4 316 271 83 14 chr1 163273011 163273155 -118920509 - HAL1b LINE L1 -798 550 397 203 361 0 0 chr1 163273237 163273298 -118920366 + L2 LINE L2 3210 3270 -2 1092 177 16 0 chr1 163273405 163273591 -118920073 + MER5A DNA MER1_type 1 189 0 194 235 0 20 chr1 163273667 163273718 -118919946 - MIR3 SINE MIR -156 52 3 891 138 0 18 chr1 163274358 163274607 -118919057 + AluSx SINE Alu 1 298 -11 406 186 0 0 chr1 163274607 163274677 -118918987 - L1MC3 LINE L1 -14 7771 7702 1995 102 11 3 chr1 163274736 163275021 -118918643 - AluSp SINE Alu -26 287 1 221 304 76 0 chr1 163275153 163275232 -118918432 - L2 LINE L2 -20 3252 3168 566 107 0 0 chr1 163275324 163275399 -118918265 - AluJ/FLAM SINE Alu -235 77 3 4589 152 45 30 chr1 163275423 163276307 -118917357 - L1MB3 LINE L1 -2 6181 5298 1835 130 18 0 chr1 163276307 163276591 -118917073 - AluSq SINE Alu -24 289 1 4589 152 45 30 chr1 163276591 163276628 -118917036 - L1MB3 LINE L1 -885 5298 5263 1360 175 19 6 chr1 163276599 163276876 -118916788 + L1MB3 LINE L1 5665 5948 -235 * 1764 234 28 2 chr1 163276875 163277310 -118916354 - L1MB3 LINE L1 -872 5274 4829 585 200 34 63 chr1 163277852 163278027 -118915637 - L1MB8 LINE L1 -5 6173 6004 1449 182 53 10 chr1 163278309 163278611 -118915053 - L1MA9 LINE L1 -39 6273 5959 22 35 0 0 chr1 163278614 163278643 -118915021 + AT_rich Low_complexity Low_complexity 1 29 0 882 161 20 0 chr1 163278646 163278795 -118914869 - AluJb SINE Alu -25 287 136 774 164 0 61 chr1 163278795 163278960 -118914704 - L1MA9 LINE L1 -344 5968 5814 245 250 0 0 chr1 163278965 163279013 -118914651 - MIR SINE MIR -75 133 86 524 308 75 23 chr1 163279024 163279290 -118914374 + MARNA DNA Mariner 77 356 -230 1977 184 13 29 chr1 163279409 163279566 -118914098 + MLT1B LTR MaLR 1 159 -231 2143 110 7 0 chr1 163279566 163279865 -118913799 - AluSq SINE Alu -12 301 1 1977 184 13 29 chr1 163279865 163280092 -118913572 + MLT1B LTR MaLR 159 379 -11 713 325 59 4 chr1 163280589 163280826 -118912838 + MIR SINE MIR 4 253 -9 309 285 41 24 chr1 163280829 163280952 -118912712 - L2 LINE L2 -520 2794 2670 1611 188 23 2 chr1 163281582 163281919 -118911745 - L1MB2 LINE L1 -1 6188 5839 526 283 34 40 chr1 163282759 163282936 -118910728 + MIR3 SINE MIR 30 205 -3 596 310 52 39 chr1 163283096 163283197 -118910467 - MIR SINE MIR 0 262 164 444 118 0 0 chr1 163283197 163283265 -118910399 + (TA)n Simple_repeat Simple_repeat 1 68 0 2138 110 0 0 chr1 163283266 163283557 -118910107 - AluSg SINE Alu -19 291 1 596 310 52 39 chr1 163283557 163283685 -118909979 - MIR SINE MIR -97 165 28 211 235 94 47 chr1 163283669 163283754 -118909910 + MIR3 SINE MIR 113 201 -7 * 1473 183 0 26 chr1 163283850 163284162 -118909502 + AluJo SINE Alu 6 309 -3 2210 89 3 0 chr1 163284216 163284507 -118909157 - AluY SINE Alu -19 292 1 1736 168 3 0 chr1 163285005 163285309 -118908355 + AluSx SINE Alu 1 305 -7 244 297 0 0 chr1 163285357 163285431 -118908233 - L1MB2 LINE L1 -307 5814 5741 225 0 0 0 chr1 163285437 163285462 -118908202 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 306 0 0 0 chr1 163285461 163285495 -118908169 + (CA)n Simple_repeat Simple_repeat 1 34 0 2006 113 7 10 chr1 163285507 163285807 -118907857 - AluSx SINE Alu -13 299 1 491 225 7 53 chr1 163286143 163286294 -118907370 - L1ME4a LINE L1 -16 6105 5962 191 88 29 0 chr1 163286311 163286345 -118907319 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 2480 143 7 28 chr1 163287603 163287980 -118905684 - L1PA16 LINE L1 -13 6153 5784 1603 161 0 82 chr1 163287980 163288160 -118905504 - AluJo SINE Alu -9 303 161 1841 130 31 17 chr1 163288160 163288452 -118905212 - AluSq SINE Alu -17 296 1 1603 161 0 82 chr1 163288452 163288601 -118905063 - AluJo SINE Alu -151 161 1 2480 143 7 28 chr1 163288601 163288648 -118905016 - L1PA16 LINE L1 -382 5784 5738 380 290 65 24 chr1 163288742 163288866 -118904798 - L2 LINE L2 -8 3264 3136 475 292 67 41 chr1 163288984 163289251 -118904413 - MLT1L LTR MaLR -1 614 237 226 143 24 0 chr1 163289271 163289313 -118904351 - MLT1J1 LTR MaLR -338 108 66 429 299 84 59 chr1 163289397 163289824 -118903840 - L2 LINE L2 -264 3008 2553 279 270 95 14 chr1 163290322 163290396 -118903268 - L2 LINE L2 -5 3267 3188 1885 136 0 3 chr1 163290555 163290842 -118902822 - AluSx SINE Alu -26 286 1 1442 193 68 0 chr1 163291689 163292010 -118901654 - L1MB3 LINE L1 -2 6181 5839 255 267 19 138 chr1 163292021 163292231 -118901433 - L2 LINE L2 -839 2475 2291 1464 255 99 43 chr1 163292232 163292745 -118900919 - MLT1H1 LTR MaLR 0 555 14 205 303 0 30 chr1 163292783 163292849 -118900815 + CT-rich Low_complexity Low_complexity 1 64 0 1068 275 167 46 chr1 163292849 163293969 -118899695 - L2 LINE L2 -5 3308 2036 1599 136 90 13 chr1 163294000 163294227 -118899437 + MER2 DNA MER2_type 22 279 -66 2036 111 9 16 chr1 163294227 163294542 -118899122 - AluSq SINE Alu 0 313 1 1599 136 90 13 chr1 163294542 163294615 -118899049 + MER2 DNA MER2_type 279 345 0 1417 255 99 48 chr1 163294661 163295225 -118898439 - MLT1E LTR MaLR 0 593 1 253 246 115 0 chr1 163295379 163295481 -118898183 - MIR SINE MIR -38 224 109 586 306 71 34 chr1 163296554 163297061 -118896603 - L1ME4a LINE L1 -18 6103 5578 29 0 0 0 chr1 163297093 163297122 -118896542 + AT_rich Low_complexity Low_complexity 1 29 0 426 233 71 105 chr1 163297318 163297420 -118896244 + MER20 DNA MER1_type 5 98 -121 872 235 9 0 chr1 163297420 163297633 -118896031 - L1MA4 LINE L1 -15 6285 6071 426 233 71 105 chr1 163297633 163297740 -118895924 + MER20 DNA MER1_type 98 207 -12 1493 171 16 32 chr1 163297800 163298109 -118895555 + AluJo SINE Alu 1 304 -8 261 0 0 0 chr1 163298110 163298139 -118895525 + (TA)n Simple_repeat Simple_repeat 2 30 0 2121 125 0 0 chr1 163298139 163298442 -118895222 - AluSq SINE Alu -10 303 1 326 307 88 7 chr1 163298602 163298739 -118894925 - MER5A DNA MER1_type -4 185 38 302 228 15 81 chr1 163298853 163298989 -118894675 - L1MB3 LINE L1 -319 5802 5676 885 293 118 16 chr1 163299477 163299978 -118893686 + L1ME3A LINE L1 5411 5962 -208 1624 181 25 33 chr1 163300537 163300902 -118892762 + MLT1A1 LTR MaLR 1 362 -3 254 301 48 0 chr1 163301064 163301147 -118892517 - MER91B DNA MER1_type 0 190 104 263 243 42 149 chr1 163302280 163302346 -118891318 + L2 LINE L2 2702 2773 -541 2159 100 0 0 chr1 163302346 163302636 -118891028 - AluSq SINE Alu -23 290 1 263 243 42 149 chr1 163302636 163302857 -118890807 + L2 LINE L2 2773 2958 -356 528 208 231 0 chr1 163303686 163303729 -118889935 + MER58C DNA MER1_type 56 88 -2332 180 0 0 0 chr1 163303729 163303749 -118889915 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 288 0 0 0 chr1 163303748 163303780 -118889884 + (CA)n Simple_repeat Simple_repeat 1 32 0 528 208 231 0 chr1 163303749 163303866 -118889798 + MER58C DNA MER1_type 88 215 0 694 296 101 9 chr1 163303867 163304182 -118889482 + MLT1L LTR MaLR 218 561 -54 1019 200 73 15 chr1 163304182 163304387 -118889277 - MER58A DNA MER1_type 0 224 8 1590 198 131 45 chr1 163305423 163305872 -118887792 + MLT1D LTR MaLR 1 488 -17 2511 126 60 25 chr1 163305943 163306257 -118887407 + L1MA2 LINE L1 5847 6182 -122 2148 107 0 7 chr1 163306257 163306566 -118887098 + AluY SINE Alu 2 308 -3 2511 126 60 25 chr1 163306566 163306688 -118886976 + L1MA2 LINE L1 6182 6298 -6 198 71 0 0 chr1 163306703 163306731 -118886933 + (A)n Simple_repeat Simple_repeat 1 28 0 361 293 207 4 chr1 163306912 163307158 -118886506 + L2 LINE L2 2065 2360 -954 3203 162 134 8 chr1 163307276 163307904 -118885760 + MER39 LTR ERV1 1 707 0 615 284 87 83 chr1 163307905 163308612 -118885052 + L2 LINE L2 2487 3213 -59 1445 169 63 3 chr1 163308672 163308835 -118884829 - AluJo SINE Alu -11 301 112 189 0 0 0 chr1 163308835 163308856 -118884808 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1445 169 63 3 chr1 163308856 163308976 -118884688 - AluJo SINE Alu -200 112 1 180 309 147 15 chr1 163309273 163309341 -118884323 + L2 LINE L2 3151 3227 -45 784 268 115 82 chr1 163309374 163309957 -118883707 + MLT1L LTR MaLR 1 602 -13 717 229 75 60 chr1 163309960 163310309 -118883355 - L1MC4 LINE L1 -1 8041 7688 3011 208 73 61 chr1 163310320 163311184 -118882480 - L1MC4 LINE L1 -399 7643 6770 255 265 61 22 chr1 163311368 163311581 -118882083 - MLT1J2 LTR MaLR -127 323 67 188 329 67 67 chr1 163311913 163312375 -118881289 - L2 LINE L2 -339 2975 2514 263 206 63 0 chr1 163312712 163312775 -118880889 + MLT1I LTR MaLR 317 383 -26 521 275 79 0 chr1 163312830 163313008 -118880656 - MIR SINE MIR -70 192 1 209 255 0 0 chr1 163313176 163313227 -118880437 + C-rich Low_complexity Low_complexity 3 53 0 1807 122 17 17 chr1 163313919 163314214 -118879450 - AluSx SINE Alu -17 295 1 319 311 96 0 chr1 163314278 163314413 -118879251 + L2 LINE L2 2898 3045 -227 385 216 0 26 chr1 163314617 163314733 -118878931 + CT-rich Low_complexity Low_complexity 2 114 0 575 230 123 87 chr1 163315044 163315353 -118878311 - MLT1H1 LTR MaLR -177 378 59 1802 172 102 42 chr1 163315385 163315786 -118877878 + MSTB LTR MaLR 1 425 -1 233 254 154 18 chr1 163315879 163315989 -118877675 - MLT1J2 LTR MaLR -244 206 82 717 290 128 27 chr1 163316787 163317201 -118876463 + L2 LINE L2 2824 3279 -34 485 110 0 0 chr1 163317276 163317358 -118876306 - Alu SINE Alu 0 312 231 321 303 96 78 chr1 163317636 163317907 -118875757 - L2 LINE L2 -1 3271 2996 354 45 0 0 chr1 163318037 163318081 -118875583 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1461 139 55 47 chr1 163318096 163318370 -118875294 - AluSx SINE Alu -36 276 1 424 252 33 60 chr1 163318710 163318752 -118874912 - MIR SINE MIR -45 217 175 1404 123 203 0 chr1 163318752 163319003 -118874661 - AluSg1 SINE Alu -7 302 1 424 252 33 60 chr1 163319003 163319111 -118874553 - MIR SINE MIR -87 175 71 2073 115 3 0 chr1 163319356 163319652 -118874012 - AluY SINE Alu -14 297 1 279 0 0 0 chr1 163319677 163319708 -118873956 + (TC)n Simple_repeat Simple_repeat 2 32 0 276 337 22 0 chr1 163319708 163319800 -118873864 + L2 LINE L2 3220 3313 0 1658 168 11 4 chr1 163319881 163320161 -118873503 - AluSx SINE Alu -30 282 1 300 363 0 20 chr1 163320262 163320364 -118873300 + L2 LINE L2 3141 3240 -32 820 204 23 11 chr1 163320398 163320574 -118873090 + MER20 DNA MER1_type 42 219 0 2014 118 0 7 chr1 163320922 163321210 -118872454 + AluSx SINE Alu 1 286 -26 1783 109 94 0 chr1 163321354 163321620 -118872044 + AluSq SINE Alu 1 291 -22 1346 208 17 34 chr1 163322176 163322329 -118871335 - AluJo SINE Alu -23 289 142 1975 135 3 13 chr1 163322329 163322641 -118871023 - AluSg SINE Alu -1 309 1 1346 208 17 34 chr1 163322641 163322781 -118870883 - AluJo SINE Alu -170 142 1 2167 102 0 0 chr1 163322789 163323084 -118870580 - AluSc SINE Alu -14 295 1 1202 251 115 55 chr1 163323139 163323669 -118869995 - MER68 LTR ERV1 0 562 1 2882 248 105 43 chr1 163323889 163324208 -118869456 - L1MEc LINE L1 -3922 2474 2176 1435 184 37 0 chr1 163324208 163324479 -118869185 - AluJo SINE Alu -31 281 1 2882 248 105 43 chr1 163324479 163324490 -118869174 - L1MEc LINE L1 -4220 2176 2167 2152 113 0 6 chr1 163324490 163324801 -118868863 - AluSc SINE Alu 0 309 1 2882 248 105 43 chr1 163324801 163326064 -118867600 - L1MEc LINE L1 -4229 2167 780 192 138 17 52 chr1 163327085 163327099 -118866565 + GA-rich Low_complexity Low_complexity 2 15 -42 2226 90 10 3 chr1 163327099 163327409 -118866255 + AluSp SINE Alu 1 312 -1 192 138 17 52 chr1 163327409 163327423 -118866241 + GA-rich Low_complexity Low_complexity 15 28 -29 1435 222 0 16 chr1 163327423 163327738 -118865926 + AluJb SINE Alu 1 310 -2 192 138 17 52 chr1 163327738 163327766 -118865898 + GA-rich Low_complexity Low_complexity 28 57 0 1745 167 0 16 chr1 163328183 163328488 -118865176 + AluSx SINE Alu 1 300 -12 195 263 0 0 chr1 163328560 163328598 -118865066 + MIR SINE MIR 51 88 -174 24 0 0 0 chr1 163328900 163328924 -118864740 + AT_rich Low_complexity Low_complexity 1 24 0 1827 119 12 47 chr1 163329023 163329343 -118864321 - AluSc SINE Alu 0 309 1 3070 163 11 5 chr1 163334439 163335002 -118858662 + TAR1 Satellite telomeric 1503 2068 -43 396 146 11 54 chr1 163335167 163335352 -118858312 + (TTAGGG)n Simple_repeat Simple_repeat 1 177 0 12201 193 35 46 chr1 163335366 163336104 -118857560 - L1PBa LINE L1 -927 5935 5190 1057 163 0 0 chr1 163336104 163336282 -118857382 - AluSp SINE Alu 0 313 136 12201 193 35 46 chr1 163336282 163336366 -118857298 - L1PBa LINE L1 -1672 5190 5107 243 0 0 0 chr1 163336366 163336393 -118857271 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 12201 193 35 46 chr1 163336393 163337636 -118856028 - L1PBa LINE L1 -1755 5107 3851 225 0 0 0 chr1 163337636 163337661 -118856003 + (TTG)n Simple_repeat Simple_repeat 3 27 0 12201 193 35 46 chr1 163337661 163340284 -118853380 - L1PBa LINE L1 -3011 3851 989 182 325 114 16 chr1 163341626 163341749 -118851915 - L3 LINE CR1 -175 1402 1268 424 222 0 0 chr1 163342075 163342156 -118851508 + LTR16B LTR ERVL 116 196 -268 1703 201 16 38 chr1 163342657 163343030 -118850634 + MLT1A1 LTR MaLR 1 365 0 313 306 37 30 chr1 163343370 163343504 -118850160 - MIR SINE MIR -108 154 20 305 250 21 31 chr1 163343515 163343611 -118850053 + MIR3 SINE MIR 108 202 -6 291 261 0 34 chr1 163344247 163344335 -118849329 - L2 LINE L2 0 3272 3188 464 145 48 0 chr1 163344379 163344462 -118849202 + AluJ/FRAM SINE Alu 214 300 -12 422 325 60 43 chr1 163344840 163345026 -118848638 + MIR SINE MIR 5 194 -62 467 243 89 97 chr1 163345227 163345588 -118848076 + MLT1I LTR MaLR 1 390 -148 296 306 48 8 chr1 163345559 163345683 -118847981 + MLT1I LTR MaLR 281 409 0 * 435 287 31 0 chr1 163345693 163345822 -118847842 - MIR SINE MIR -14 248 116 767 294 22 9 chr1 163346145 163346376 -118847288 + MIR SINE MIR 17 250 -12 325 257 26 105 chr1 163346871 163346949 -118846715 + MIR SINE MIR 122 184 -78 1812 109 64 7 chr1 163346949 163347232 -118846432 + AluSc SINE Alu 1 299 -10 325 257 26 105 chr1 163347232 163347305 -118846359 + MIR SINE MIR 184 261 -1 505 295 27 13 chr1 163347632 163347781 -118845883 + MIR SINE MIR 37 187 -75 2082 88 10 36 chr1 163347784 163348092 -118845572 + AluSq SINE Alu 1 300 -13 491 235 123 18 chr1 163348862 163349032 -118844632 + MIR3 SINE MIR 4 191 -17 1696 60 5 0 chr1 163349161 163349378 -118844286 + AluSp SINE Alu 91 308 -5 622 138 11 0 chr1 163349389 163349476 -118844188 + 5S rRNA rRNA 3 90 -31 1460 190 0 63 chr1 163349759 163350091 -118843573 + AluJo SINE Alu 1 311 -1 1656 256 93 33 chr1 163350317 163350868 -118842796 - MLT1E LTR MaLR 0 593 10 607 239 58 94 chr1 163350875 163351151 -118842513 - MLT1E-int LTR MaLR 0 1371 1106 207 205 0 0 chr1 163351218 163351257 -118842407 - L2 LINE L2 0 3313 3275 343 286 92 10 chr1 163351683 163351781 -118841883 - MER5B DNA MER1_type -45 133 28 335 328 31 21 chr1 163351815 163352007 -118841657 - MER117 DNA MER1_type -3 194 1 199 323 137 25 chr1 163352073 163352234 -118841430 + L3 LINE CR1 1043 1221 -356 402 327 127 0 chr1 163352331 163352496 -118841168 + MIR SINE MIR 53 238 -24 1757 217 35 44 chr1 163353316 163353749 -118839915 + L1MC4 LINE L1 6586 7014 -1028 581 211 158 33 chr1 163353921 163353960 -118839704 + L1MC4 LINE L1 7014 7047 -948 1710 153 3 33 chr1 163353960 163354267 -118839397 + AluJo SINE Alu 1 298 -14 581 211 158 33 chr1 163354267 163355099 -118838565 + L1MC4 LINE L1 7047 7995 0 525 205 43 77 chr1 163355113 163355230 -118838434 + MLT1F1 LTR MaLR 13 127 -440 305 262 117 39 chr1 163355329 163355432 -118838232 - MIR SINE MIR -118 144 34 486 260 61 77 chr1 163355460 163355490 -118838174 + MIR SINE MIR 22 51 -211 793 195 107 39 chr1 163355490 163355695 -118837969 - MER20 DNA MER1_type 0 219 1 486 260 61 77 chr1 163355695 163355860 -118837804 + MIR SINE MIR 51 214 -48 860 272 25 0 chr1 163356085 163356287 -118837377 + MIR SINE MIR 13 219 -43 758 306 76 65 chr1 163356339 163356799 -118836865 + L2 LINE L2 2843 3307 -6 319 264 0 75 chr1 163357214 163357320 -118836344 - MIR3 SINE MIR -48 160 63 295 87 87 0 chr1 163357489 163357535 -118836129 - L2 LINE L2 -2 3311 3262 189 0 0 0 chr1 163358701 163358722 -118834942 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr1 163360856 163360885 -118832779 + GC_rich Low_complexity Low_complexity 1 29 0 233 243 128 68 chr1 163361145 163361293 -118832371 + MIR SINE MIR 13 169 -93 200 351 60 13 chr1 163361978 163362129 -118831535 + L2 LINE L2 2327 2484 -830 1251 122 11 0 chr1 163362383 163362571 -118831093 + AluY SINE Alu 119 308 -3 183 80 0 0 chr1 163362606 163362631 -118831033 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 6035 175 45 41 chr1 163362837 163363268 -118830396 + L1MA9 LINE L1 4038 4466 -1846 2097 102 0 23 chr1 163363268 163363572 -118830092 + AluSx SINE Alu 1 297 -15 6035 175 45 41 chr1 163363572 163364896 -118828768 + L1MA9 LINE L1 4466 5810 -502 815 212 30 30 chr1 163364896 163365099 -118828565 + MER6B DNA MER2_type 4 206 -4 6035 175 45 41 chr1 163365099 163365566 -118828098 + L1MA9 LINE L1 5810 6274 -38 317 279 78 78 chr1 163365602 163365740 -118827924 + L1MC/D LINE L1 5584 5724 -2084 2602 46 0 3 chr1 163365740 163366043 -118827621 + AluY SINE Alu 2 303 -8 317 279 78 78 chr1 163366043 163366148 -118827516 + L1MC/D LINE L1 5723 5827 -1981 180 0 0 0 chr1 163366187 163366207 -118827457 + (CA)n Simple_repeat Simple_repeat 2 21 0 317 328 55 22 chr1 163367355 163367538 -118826126 - MIR SINE MIR -2 260 72 2239 92 7 0 chr1 163368649 163368943 -118824721 - AluSx SINE Alu -16 296 1 789 304 119 37 chr1 163368955 163369442 -118824222 + L2 LINE L2 2579 3127 -186 2308 116 0 0 chr1 163369442 163369752 -118823912 - AluSx SINE Alu -2 310 1 789 304 119 37 chr1 163369752 163369944 -118823720 + L2 LINE L2 3127 3302 -11 800 181 0 0 chr1 163369951 163370084 -118823580 + FLAM_A SINE Alu 1 133 0 1503 196 0 3 chr1 163370238 163370524 -118823140 + AluJb SINE Alu 28 312 0 2129 82 0 11 chr1 163371474 163371756 -118821908 + AluY SINE Alu 9 287 -24 24 0 0 0 chr1 163372127 163372151 -118821513 + AT_rich Low_complexity Low_complexity 1 24 0 2077 96 0 21 chr1 163374008 163374288 -118819376 + AluSc SINE Alu 5 278 -31 315 0 0 0 chr1 163374297 163374332 -118819332 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 196 269 19 0 chr1 163375224 163375276 -118818388 - L2 LINE L2 -7 3265 3213 887 268 186 35 chr1 163375770 163376720 -118816944 + HAL1 LINE L1 1337 2450 -57 2127 132 3 0 chr1 163376720 163377023 -118816641 - AluSx SINE Alu -8 304 1 887 268 186 35 chr1 163377023 163377080 -118816584 + HAL1 LINE L1 2450 2497 -10 757 248 41 28 chr1 163377181 163377399 -118816265 - MER58A DNA MER1_type 0 224 4 329 363 51 8 chr1 163377532 163377769 -118815895 + L2 LINE L2 1805 2051 -1263 692 308 99 35 chr1 163377889 163378343 -118815321 + L1MEc LINE L1 42 524 -5872 470 225 89 30 chr1 163378490 163378659 -118815005 + Charlie1 DNA MER1_type 47 225 -2536 491 189 31 16 chr1 163378661 163378788 -118814876 + Charlie1 DNA MER1_type 2627 2755 -6 267 208 0 0 chr1 163381151 163381199 -118812465 + MER33 DNA MER1_type 51 98 -226 622 138 23 115 chr1 163381213 163381296 -118812368 + MER33 DNA MER1_type 205 265 -2359 1627 116 8 8 chr1 163381296 163381537 -118812127 - AluSq SINE Alu -17 296 56 622 138 23 115 chr1 163381537 163381627 -118812037 + MER33 DNA MER1_type 265 362 -1 2194 133 0 0 chr1 163381970 163382272 -118811392 + AluSx SINE Alu 1 302 -10 2158 87 25 0 chr1 163382356 163382667 -118810997 - AluY SINE Alu 0 318 1 337 310 44 32 chr1 163382756 163382914 -118810750 + L1MC4a LINE L1 5742 5901 -1907 344 132 66 26 chr1 163382980 163383056 -118810608 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr1 163383691 163383712 -118809952 + AT_rich Low_complexity Low_complexity 1 21 0 1767 220 55 48 chr1 163383930 163384342 -118809322 + L1M4 LINE L1 3076 3484 -2662 1629 131 45 4 chr1 163384342 163384587 -118809077 + AluSx SINE Alu 1 255 -57 2157 109 3 40 chr1 163384587 163384909 -118808755 + AluSq SINE Alu 3 312 -1 1767 220 55 48 chr1 163384909 163385119 -118808545 + L1M4 LINE L1 3483 3703 -2443 1530 183 70 7 chr1 163385121 163385405 -118808259 + AluJo SINE Alu 5 306 -6 767 246 117 28 chr1 163385431 163385789 -118807875 + L1ME1 LINE L1 5774 6160 -6 592 212 188 12 chr1 163386844 163387009 -118806655 - MIR SINE MIR 0 262 69 838 219 0 0 chr1 163387210 163387365 -118806299 - FRAM SINE Alu -21 155 1 2179 104 3 19 chr1 163387991 163388308 -118805356 - AluSx SINE Alu 0 312 1 196 332 163 20 chr1 163390458 163390759 -118802905 + L2 LINE L2 1179 1522 -1792 867 302 183 28 chr1 163390856 163391605 -118802059 + L2 LINE L2 2053 2917 -397 2165 125 0 3 chr1 163391679 163391984 -118801680 - AluSx SINE Alu -8 304 1 999 224 35 45 chr1 163392433 163392719 -118800945 - MER31B LTR ERV1 -183 283 1 41 21 0 0 chr1 163392816 163392864 -118800800 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 163393840 163393862 -118799802 + AT_rich Low_complexity Low_complexity 1 22 0 1111 168 9 39 chr1 163393960 163394192 -118799472 + Tigger1 DNA MER2_type 14 238 -2180 632 112 0 0 chr1 163394193 163394282 -118799382 + AluY SINE Alu 207 295 -16 21 36 0 0 chr1 163396090 163396118 -118797546 + AT_rich Low_complexity Low_complexity 1 28 0 579 307 137 23 chr1 163396423 163396729 -118796935 + MER20B DNA MER1_type 92 432 -351 192 77 0 0 chr1 163396811 163396837 -118796827 + (CA)n Simple_repeat Simple_repeat 2 27 0 836 298 34 29 chr1 163396871 163397281 -118796383 - MER92A LTR ERV1 0 412 1 250 258 72 72 chr1 163398540 163398707 -118794957 + MIR3 SINE MIR 30 196 -12 352 272 48 0 chr1 163398710 163398821 -118794843 - MIR SINE MIR -63 145 48 1427 83 25 0 chr1 163398941 163399145 -118794519 - THE1-int LTR MaLR -1303 277 69 1181 118 65 0 chr1 163399145 163399314 -118794350 - AluSx SINE Alu -132 180 1 361 213 111 9 chr1 163400855 163400963 -118792701 - L1M4 LINE L1 -1530 4616 4498 1155 233 142 13 chr1 163400982 163401432 -118792232 - L1MC4 LINE L1 -1983 5993 5486 783 238 77 58 chr1 163401435 163401864 -118791800 - L1MC4 LINE L1 -2665 3415 2979 661 243 75 8 chr1 163401907 163402146 -118791518 - L1MC4 LINE L1 -3174 2906 2652 292 301 59 7 chr1 163402165 163402301 -118791363 - L1MC4 LINE L1 -5906 164 22 1725 180 11 0 chr1 163402343 163402626 -118791038 - AluJb SINE Alu -26 286 1 405 262 43 88 chr1 163402658 163402963 -118790701 - L1M4 LINE L1 -2431 3715 3425 1484 188 0 0 chr1 163402990 163403230 -118790434 + AluJb SINE Alu 3 242 -70 207 281 0 0 chr1 163403269 163403351 -118790313 + CT-rich Low_complexity Low_complexity 1 82 0 22 35 0 0 chr1 163403640 163403669 -118789995 + AT_rich Low_complexity Low_complexity 1 29 0 546 331 84 32 chr1 163404107 163404454 -118789210 - L2 LINE L2 -499 2815 2451 436 328 42 16 chr1 163405765 163405957 -118787707 + HERVL LTR ERVL 2267 2463 -3191 334 197 15 0 chr1 163408790 163408856 -118784808 - MIR3 SINE MIR -47 161 95 1321 162 132 0 chr1 163409333 163409599 -118784065 + AluJo SINE Alu 2 302 0 1180 140 0 16 chr1 163409724 163409917 -118783747 + MER30B DNA MER1_type 1 190 0 709 157 0 0 chr1 163410282 163410397 -118783267 + FLAM_C SINE Alu 1 115 -18 693 53 107 4 chr1 163411305 163411530 -118782134 + (AAATG)n Simple_repeat Simple_repeat 1 248 0 442 83 83 53 chr1 163411557 163411726 -118781938 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 598 60 94 34 chr1 163411738 163411973 -118781691 + (AAATG)n Simple_repeat Simple_repeat 1 249 0 719 60 115 28 chr1 163411994 163412414 -118781250 + (AAATG)n Simple_repeat Simple_repeat 1 456 0 634 55 124 20 chr1 163412427 163412719 -118780945 + (AAATG)n Simple_repeat Simple_repeat 1 322 0 614 56 99 37 chr1 163412731 163412892 -118780772 + (AAATG)n Simple_repeat Simple_repeat 3 173 0 478 75 133 0 chr1 163412903 163413122 -118780542 + (AAATG)n Simple_repeat Simple_repeat 1 248 0 677 54 95 36 chr1 163413165 163413333 -118780331 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 602 65 130 0 chr1 163413346 163413500 -118780164 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 544 72 96 48 chr1 163413532 163413699 -118779965 + (AAATG)n Simple_repeat Simple_repeat 5 179 0 451 54 127 36 chr1 163413739 163413984 -118779680 + (AAATG)n Simple_repeat Simple_repeat 1 267 0 787 71 83 18 chr1 163413998 163414167 -118779497 + (AAATG)n Simple_repeat Simple_repeat 1 180 0 701 56 108 31 chr1 163414205 163414675 -118778989 + (AAATG)n Simple_repeat Simple_repeat 1 505 0 1548 148 186 19 chr1 163414783 163415155 -118778509 + Tigger2a DNA MER2_type 1 434 0 27 29 0 0 chr1 163416078 163416112 -118777552 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 163417288 163417309 -118776355 + AT_rich Low_complexity Low_complexity 1 21 0 2114 120 0 13 chr1 163417388 163417704 -118775960 - AluSx SINE Alu 0 312 1 518 293 68 122 chr1 163417965 163418717 -118774947 - L1MEd LINE L1 -3303 2826 2116 198 0 0 0 chr1 163418753 163418775 -118774889 + (TA)n Simple_repeat Simple_repeat 1 22 0 2101 109 0 13 chr1 163418901 163419203 -118774461 + AluSg SINE Alu 1 298 -12 318 312 101 26 chr1 163419658 163420026 -118773638 - L1MEd LINE L1 -4867 1252 929 307 304 54 0 chr1 163420300 163420392 -118773272 - L1MEd LINE L1 -5493 626 530 227 228 0 70 chr1 163422697 163422754 -118770910 - LTR16C LTR ERVL -356 135 83 21 36 0 0 chr1 163424312 163424340 -118769324 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 163425257 163425286 -118768378 + AT_rich Low_complexity Low_complexity 1 29 0 222 300 0 25 chr1 163425486 163425566 -118768098 + (CATA)n Simple_repeat Simple_repeat 3 80 0 25 31 0 0 chr1 163425760 163425792 -118767872 + AT_rich Low_complexity Low_complexity 1 32 0 1525 232 18 0 chr1 163425845 163426186 -118767478 + MER7A DNA MER2_type 2 346 0 640 260 131 27 chr1 163426819 163427093 -118766571 - MER77 LTR ERV1 -6 599 323 242 214 95 0 chr1 163427153 163427237 -118766427 + L1MB7 LINE L1 3064 3155 -2991 4182 264 70 19 chr1 163427264 163429056 -118764608 + L1MB7 LINE L1 3565 5445 -735 2395 227 40 7 chr1 163429072 163429675 -118763989 + L1MB7 LINE L1 5562 6184 0 423 377 51 7 chr1 163429736 163430024 -118763640 - L2 LINE L2 -266 3047 2748 244 260 73 118 chr1 163430045 163430291 -118763373 + L3 LINE CR1 760 994 -583 1159 174 22 4 chr1 163431617 163431847 -118761817 + L1MB3 LINE L1 5949 6182 -1 595 321 83 44 chr1 163431956 163432652 -118761012 + L1MEc LINE L1 546 1222 -4983 732 160 30 0 chr1 163432734 163432865 -118760799 - MSTB1 LTR MaLR -297 135 1 245 233 44 11 chr1 163434281 163434371 -118759293 - LTR48 LTR ERV1 -48 739 647 1559 172 84 62 chr1 163434467 163434849 -118758815 - LTR49 LTR ERV1 -168 427 34 1867 141 7 4 chr1 163434849 163435125 -118758539 + AluSq SINE Alu 14 290 -23 1559 172 84 62 chr1 163435125 163435160 -118758504 - LTR49 LTR ERV1 -561 34 1 28 48 0 0 chr1 163435610 163435652 -118758012 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr1 163435856 163435888 -118757776 + AT_rich Low_complexity Low_complexity 1 32 0 543 229 142 11 chr1 163436146 163436329 -118757335 + MER20 DNA MER1_type 10 216 -3 1667 181 56 23 chr1 163436469 163436900 -118756764 - LTR56 LTR ERV1 0 445 1 2172 192 100 11 chr1 163437089 163437630 -118756034 - LTR49 LTR ERV1 -6 589 1 21 0 0 0 chr1 163438198 163438219 -118755445 + AT_rich Low_complexity Low_complexity 1 21 0 258 291 17 34 chr1 163438408 163438587 -118755077 + (TA)n Simple_repeat Simple_repeat 2 177 0 228 170 21 21 chr1 163438958 163439005 -118754659 + L1ME LINE L1 269 315 -5755 561 276 38 16 chr1 163439510 163439695 -118753969 - MER54A LTR ERVL -5 896 708 655 205 15 77 chr1 163439695 163439890 -118753774 - MER31A-int LTR ERV1 -4553 383 201 * 762 192 61 131 chr1 163439857 163440154 -118753510 - MER31A-int LTR ERV1 -4646 290 15 2588 143 56 7 chr1 163440201 163440663 -118753001 - MER31A LTR ERV1 0 485 1 2114 98 0 17 chr1 163440919 163441215 -118752449 - AluSq SINE Alu -22 291 1 2400 63 3 3 chr1 163441587 163441890 -118751774 + AluY SINE Alu 1 303 -8 254 346 55 35 chr1 163442381 163442670 -118750994 - HAL1 LINE L1 -836 1671 1377 22 0 0 0 chr1 163442870 163442892 -118750772 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 163442905 163442925 -118750739 + (TC)n Simple_repeat Simple_repeat 1 20 0 6744 66 10 2 chr1 163443030 163444286 -118749378 - L1PA6 LINE L1 -4 6150 4890 1297 212 13 0 chr1 163444623 163444859 -118748805 - MER8 DNA MER2_type 0 239 1 376 244 0 0 chr1 163444894 163444984 -118748680 + L1MC4 LINE L1 6614 6703 -1339 243 0 0 0 chr1 163444984 163445011 -118748653 + (TA)n Simple_repeat Simple_repeat 1 27 0 1805 193 5 42 chr1 163445016 163445421 -118748243 - MLT1B LTR MaLR 0 390 1 25 75 0 0 chr1 163445445 163445498 -118748166 + AT_rich Low_complexity Low_complexity 1 53 0 2029 131 20 0 chr1 163446122 163446419 -118747245 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr1 163446510 163446532 -118747132 + AT_rich Low_complexity Low_complexity 1 22 0 644 285 50 32 chr1 163446713 163446934 -118746730 + MIR SINE MIR 20 244 -18 371 311 112 60 chr1 163447084 163447736 -118745928 - L2 LINE L2 -823 2491 1806 27 0 0 0 chr1 163447743 163447770 -118745894 + AT_rich Low_complexity Low_complexity 1 27 0 862 118 0 15 chr1 163447857 163447992 -118745672 - AluSg/x SINE Alu 0 312 180 2208 94 3 0 chr1 163448628 163448916 -118744748 - AluSc SINE Alu -20 289 1 546 310 91 48 chr1 163449021 163449260 -118744404 + L1MC4a LINE L1 5348 5575 -2233 2885 121 20 7 chr1 163449260 163449716 -118743948 + L1PA16 LINE L1 5704 6165 -1 546 310 91 48 chr1 163449716 163450038 -118743626 + L1MC4a LINE L1 5575 5933 -1875 25 65 0 0 chr1 163451373 163451419 -118742245 + AT_rich Low_complexity Low_complexity 1 46 0 2198 175 3 3 chr1 163452106 163452471 -118741193 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1 163452807 163452830 -118740834 + AT_rich Low_complexity Low_complexity 1 23 0 1409 146 0 13 chr1 163453477 163453703 -118739961 - AluJo SINE Alu -4 308 86 2253 125 0 0 chr1 163454310 163454622 -118739042 - AluSx SINE Alu 0 312 1 537 294 20 20 chr1 163454802 163454999 -118738665 - LTR67 LTR ERVL -25 532 336 311 208 42 0 chr1 163455657 163455729 -118737935 - ERVL LTR ERVL -464 5300 5226 778 195 36 26 chr1 163455792 163456111 -118737553 - L1MC2 LINE L1 -2 6342 5921 1546 133 24 0 chr1 163456839 163457094 -118736570 - L1MC2 LINE L1 -365 5979 5719 1071 137 7 0 chr1 163457099 163457338 -118736326 - AluSg/x SINE Alu 0 369 130 1185 328 87 56 chr1 163457479 163458554 -118735110 - ERVL LTR ERVL -745 5019 3904 2143 148 0 0 chr1 163458554 163458865 -118734799 - AluSx SINE Alu -1 311 1 1185 328 87 56 chr1 163458865 163458955 -118734709 - ERVL LTR ERVL -1860 3904 3818 430 303 15 8 chr1 163458989 163459121 -118734543 - ERVL LTR ERVL -1945 3709 3577 2007 125 3 13 chr1 163459604 163459916 -118733748 + AluSg SINE Alu 1 309 -1 303 82 90 8 chr1 163460594 163460716 -118732948 + (TA)n Simple_repeat Simple_repeat 1 132 0 2216 97 3 0 chr1 163460716 163461005 -118732659 - AluSp SINE Alu -23 290 1 520 186 0 0 chr1 163461254 163461356 -118732308 - AluJb SINE Alu -3 309 208 1366 103 0 5 chr1 163461834 163462019 -118731645 - AluSp SINE Alu -12 301 118 231 296 28 0 chr1 163462487 163462558 -118731106 - MER5B DNA MER1_type -10 168 96 2247 82 10 3 chr1 163462643 163462936 -118730728 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr1 163463476 163463497 -118730167 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 163463817 163463842 -118729822 + AT_rich Low_complexity Low_complexity 1 25 0 559 265 142 55 chr1 163463911 163464348 -118729316 + L1ME4a LINE L1 5399 5873 -248 1360 298 82 50 chr1 163464361 163465424 -118728240 + L1MEd LINE L1 2 1098 -5021 861 299 39 33 chr1 163465526 163466065 -118727599 + L1M4 LINE L1 3447 3988 -2158 408 173 135 29 chr1 163466078 163466182 -118727482 - LTR33A LTR ERVL -24 499 385 36 0 0 0 chr1 163466182 163466218 -118727446 + AT_rich Low_complexity Low_complexity 1 36 0 332 309 21 0 chr1 163466921 163467018 -118726646 + MER81 DNA DNA 1 99 -15 947 128 11 11 chr1 163467597 163467777 -118725887 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 284 26 0 26 chr1 163467782 163467820 -118725844 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 980 186 11 0 chr1 163467820 163467997 -118725667 - AluJo SINE Alu 0 312 134 460 219 151 8 chr1 163468033 163468152 -118725512 + MER5B DNA MER1_type 2 137 -41 2359 116 22 19 chr1 163468233 163468596 -118725068 - THE1B LTR MaLR 0 364 1 350 208 118 62 chr1 163468724 163468868 -118724796 + MER5B DNA MER1_type 22 173 -5 842 140 0 0 chr1 163469983 163470097 -118723567 - AluJo SINE Alu -183 129 16 23 0 0 0 chr1 163470180 163470203 -118723461 + AT_rich Low_complexity Low_complexity 1 23 0 239 286 86 39 chr1 163470619 163470983 -118722681 + HAL1b LINE L1 1194 1187 -161 541 135 22 0 chr1 163470983 163471072 -118722592 - L1MA6 LINE L1 0 6300 6210 239 286 86 39 chr1 163471072 163471244 -118722420 + HAL1b LINE L1 1186 1348 0 1893 190 32 9 chr1 163472055 163472403 -118721261 - MLT1A1 LTR MaLR 0 365 10 288 318 14 14 chr1 163472719 163472867 -118720797 - MIR SINE MIR 0 262 115 7953 49 1 0 chr1 163473497 163475238 -118718426 + L1PA5 LINE L1 4409 6150 -4 739 174 116 26 chr1 163475308 163475463 -118718201 - FAM SINE Alu -6 169 1 235 132 0 0 chr1 163475536 163475574 -118718090 + L1ME LINE L1 5390 5427 -735 9248 132 26 21 chr1 163475788 163477275 -118716389 - Tigger2 DNA MER2_type -2 2716 1223 1577 104 0 0 chr1 163477281 163477482 -118716182 - AluSq SINE Alu -112 201 1 208 259 86 17 chr1 163477499 163477615 -118716049 + L2 LINE L2 2400 2523 -791 1779 187 143 12 chr1 163477657 163477885 -118715779 + LOR1a LTR ERV1 1 198 -299 2612 45 0 10 chr1 163477885 163478198 -118715466 - AluY SINE Alu -1 310 1 1779 187 143 12 chr1 163478198 163478381 -118715283 + LOR1a LTR ERV1 198 466 -31 2104 98 11 0 chr1 163478883 163479203 -118714461 + AluSg SINE Alu 1 323 0 233 294 15 0 chr1 163479539 163479607 -118714057 - tRNA-Val-GTG tRNA tRNA -6 70 2 215 152 22 0 chr1 163479730 163479776 -118713888 + (TA)n Simple_repeat Simple_repeat 1 47 0 423 0 0 0 chr1 163479776 163479823 -118713841 + (CA)n Simple_repeat Simple_repeat 2 48 0 644 131 9 0 chr1 163479823 163479930 -118713734 - FLAM_C SINE Alu -33 110 3 23 33 0 0 chr1 163479933 163479963 -118713701 + AT_rich Low_complexity Low_complexity 1 30 0 617 283 46 5 chr1 163480072 163480291 -118713373 + L1MEc LINE L1 1566 1793 -4603 505 196 53 30 chr1 163480313 163480510 -118713154 + L1MEc LINE L1 1895 2138 -4258 2209 87 0 21 chr1 163480523 163480859 -118712805 + AluSx SINE Alu 2 331 0 229 274 59 10 chr1 163480870 163480972 -118712692 + L1ME LINE L1 5614 5720 -450 674 0 0 0 chr1 163482146 163482221 -118711443 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1047 149 0 58 chr1 163482688 163482876 -118710788 + AluSg/x SINE Alu 134 310 -2 2681 165 6 57 chr1 163483110 163483462 -118710202 - MER72 LTR ERV1 -221 501 133 2684 42 0 0 chr1 163483462 163483769 -118709895 - AluY SINE Alu -4 307 1 2681 165 6 57 chr1 163483769 163483784 -118709880 - MER72 LTR ERV1 -589 133 119 3777 101 44 53 chr1 163483784 163484014 -118709650 - MER51D LTR ERV1 -2 655 424 2276 74 0 3 chr1 163484014 163484336 -118709328 - AluY SINE Alu 0 321 1 3777 101 44 53 chr1 163484336 163484603 -118709061 - MER51D LTR ERV1 -233 424 161 2134 124 0 3 chr1 163484603 163484901 -118708763 - AluSx SINE Alu -15 297 1 3777 101 44 53 chr1 163484901 163485061 -118708603 - MER51D LTR ERV1 -496 161 1 2681 165 6 57 chr1 163485061 163485220 -118708444 - MER72 LTR ERV1 -603 119 1 1006 131 119 0 chr1 163485220 163485381 -118708283 - LTR49 LTR ERV1 -411 184 4 1158 195 45 5 chr1 163485381 163485583 -118708081 + MER89 LTR ERV1 347 557 -2 691 191 85 75 chr1 163485601 163485919 -118707745 + MER31B LTR ERV1 1 445 -21 594 196 40 54 chr1 163485932 163486080 -118707584 + LTR8 LTR ERV1 1 146 -545 2001 133 39 18 chr1 163486083 163486413 -118707251 + MER1B DNA MER1_type 1 337 -2 2918 137 51 46 chr1 163486424 163486994 -118706670 + LTR8A LTR ERV1 155 727 0 366 303 91 25 chr1 163487010 163487251 -118706413 - HAL1 LINE L1 -1811 696 440 3276 116 35 4 chr1 163487284 163487767 -118705897 - MER41E LTR ERV1 0 512 15 180 77 0 0 chr1 163488156 163488182 -118705482 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1501 6 0 0 chr1 163488905 163489069 -118704595 + U1 snRNA snRNA 1 164 -1 289 182 76 30 chr1 163489511 163489577 -118704087 - MER45B DNA AcHobo -660 380 312 309 245 101 22 chr1 163489580 163489719 -118703945 + REP3 LTR ERV 4 153 -409 2425 43 40 7 chr1 163490066 163490366 -118703298 - AluY SINE Alu 0 311 2 1758 116 16 0 chr1 163490519 163490587 -118703077 + AluSx SINE Alu 59 124 -188 234 0 0 0 chr1 163490587 163490613 -118703051 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1758 116 16 0 chr1 163490613 163490794 -118702870 + AluSx SINE Alu 124 312 0 432 37 0 0 chr1 163490986 163491040 -118702624 + (TC)n Simple_repeat Simple_repeat 1 54 0 1314 169 96 63 chr1 163492124 163492426 -118701238 + AluJo SINE Alu 1 312 0 630 160 0 0 chr1 163492494 163492600 -118701064 + FLAM_A SINE Alu 18 123 -19 551 178 20 0 chr1 163492605 163492706 -118700958 + FRAM SINE Alu 40 142 -34 2131 123 0 43 chr1 163492728 163493054 -118700610 - AluSx SINE Alu 0 312 1 6295 120 40 10 chr1 163493247 163494187 -118699477 + LTR5 LTR ERVK 1 969 0 2240 99 0 0 chr1 163494250 163494534 -118699130 - AluSg SINE Alu -26 284 1 1511 6 0 0 chr1 163494735 163494899 -118698765 + U1 snRNA snRNA 1 164 -1 298 167 76 30 chr1 163495340 163495406 -118698258 - MER45B DNA AcHobo -660 380 312 306 245 101 22 chr1 163495409 163495548 -118698116 + REP3 LTR ERV 4 153 -409 2312 44 51 7 chr1 163495895 163496189 -118697475 - AluY SINE Alu -3 308 2 1727 124 16 0 chr1 163496342 163496410 -118697254 + AluSx SINE Alu 59 124 -188 201 39 0 0 chr1 163496410 163496436 -118697228 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1727 124 16 0 chr1 163496436 163496617 -118697047 + AluSx SINE Alu 124 312 0 650 189 18 65 chr1 163496911 163497080 -118696584 - AluJb SINE Alu -16 296 136 1754 167 0 0 chr1 163497082 163497358 -118696306 - AluJb SINE Alu -16 296 21 881 193 0 0 chr1 163497812 163497987 -118695677 + FRAM SINE Alu 1 175 0 1375 181 4 0 chr1 163499310 163499569 -118694095 + AluJo SINE Alu 44 303 0 2115 117 13 0 chr1 163500735 163501034 -118692630 + AluSp SINE Alu 1 303 -10 3441 169 24 38 chr1 163501469 163502150 -118691514 + LTR51 LTR ERV1 1 671 0 1754 208 32 31 chr1 163502225 163502686 -118690978 - LTR56 LTR ERV1 -1 436 1 644 192 17 15 chr1 163502787 163502999 -118690665 - Charlie5 DNA MER1_type 0 2616 2 372 290 12 30 chr1 163503013 163503182 -118690482 - L1ME LINE L1 -531 5639 5474 270 253 11 44 chr1 163503229 163503320 -118690344 + MER119 DNA MER1_type 172 259 -324 1909 171 0 0 chr1 163503326 163503624 -118690040 + AluSx SINE Alu 1 298 -14 28 29 0 0 chr1 163503719 163503754 -118689910 + AT_rich Low_complexity Low_complexity 1 35 0 209 219 0 49 chr1 163503768 163503850 -118689814 + (TTA)n Simple_repeat Simple_repeat 2 79 0 1640 239 48 11 chr1 163504038 163504415 -118689249 - MER87 LTR ERV1 -1 540 150 2010 135 3 0 chr1 163504417 163504729 -118688935 - AluSq SINE Alu 0 313 1 689 183 15 7 chr1 163504735 163504872 -118688792 - AluJo SINE Alu -174 138 1 198 0 0 0 chr1 163505958 163505980 -118687684 + (GA)n Simple_repeat Simple_repeat 1 22 0 1723 173 10 20 chr1 163506458 163506764 -118686900 + AluJb SINE Alu 1 303 -9 1513 182 7 45 chr1 163506767 163507058 -118686606 + AluJo SINE Alu 1 280 -32 275 0 0 28 chr1 163507062 163507098 -118686566 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1498 188 22 0 chr1 163507238 163507514 -118686150 + AluJo SINE Alu 8 289 -23 1494 172 20 20 chr1 163507686 163507983 -118685681 + AluJb SINE Alu 9 305 -7 527 118 0 0 chr1 163508640 163508716 -118684948 - tRNA-Asn-AAC tRNA tRNA -1 76 1 1757 105 4 26 chr1 163509782 163510048 -118683616 + L1PA11 LINE L1 5912 6171 -3 356 254 0 0 chr1 163510936 163511007 -118682657 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2325 65 0 3 chr1 163511836 163512126 -118681538 + AluSc SINE Alu 1 289 -20 4179 231 101 28 chr1 163512425 163513748 -118679916 - L1MCa LINE L1 -2471 3955 2729 2204 117 10 0 chr1 163513748 163514055 -118679609 - AluSq SINE Alu -3 310 1 4179 231 101 28 chr1 163514055 163515084 -118678580 - L1MCa LINE L1 -3697 2729 1431 1768 191 19 17 chr1 163515087 163515449 -118678215 + MLT2D LTR ERVL 4 366 -48 256 24 49 0 chr1 163515449 163515490 -118678174 + (TC)n Simple_repeat Simple_repeat 1 43 0 2177 75 55 0 chr1 163515603 163515895 -118677769 + AluY SINE Alu 1 308 -3 401 285 25 70 chr1 163516144 163516428 -118677236 + L1MC4 LINE L1 7359 7629 -413 299 297 10 10 chr1 163516514 163516615 -118677049 - L1MC4 LINE L1 -482 7560 7460 218 336 62 20 chr1 163517417 163517563 -118676101 - MIR3 SINE MIR -7 201 50 261 0 0 0 chr1 163518106 163518135 -118675529 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2247 116 0 3 chr1 163518137 163518431 -118675233 - AluSx SINE Alu -19 293 1 1821 151 7 7 chr1 163518628 163518954 -118674710 + AluSx SINE Alu 5 330 0 255 308 39 60 chr1 163519267 163519449 -118674215 - MER5B DNA MER1_type 0 178 1 251 322 25 0 chr1 163520101 163520219 -118673445 - LTR16A1 LTR ERVL 0 457 337 625 115 0 0 chr1 163521908 163521995 -118671669 - AluSq/x SINE Alu -192 120 34 943 121 7 14 chr1 163522002 163522142 -118671522 - AluY SINE Alu -172 139 1 1826 166 0 23 chr1 163522362 163522669 -118670995 - AluJo SINE Alu -12 300 1 1437 118 0 0 chr1 163522734 163522929 -118670735 - AluSp SINE Alu -11 302 108 228 184 0 0 chr1 163522931 163522969 -118670695 + Alu SINE Alu 49 86 -217 962 282 114 41 chr1 163523162 163524155 -118669509 - L1MEd LINE L1 -4695 1615 531 756 269 44 74 chr1 163524784 163525156 -118668508 + L1MC4a LINE L1 5538 5899 -1909 2562 134 37 37 chr1 163525156 163525590 -118668074 - Tigger2a DNA MER2_type 0 434 1 756 269 44 74 chr1 163525590 163525607 -118668057 + L1MC4a LINE L1 5899 5915 -1893 1951 154 3 6 chr1 163525696 163526007 -118667657 + AluJb SINE Alu 1 310 -2 335 321 0 0 chr1 163526257 163526363 -118667301 + MIR3 SINE MIR 98 203 -5 294 262 55 62 chr1 163526944 163527089 -118666575 - L1ME4a LINE L1 -4 6117 5974 204 40 0 0 chr1 163527091 163527116 -118666548 + (CA)n Simple_repeat Simple_repeat 2 26 0 2433 68 7 19 chr1 163527223 163527532 -118666132 - AluY SINE Alu -6 305 1 870 246 26 9 chr1 163527720 163527948 -118665716 - MIR SINE MIR -22 240 9 442 272 110 37 chr1 163527959 163528150 -118665514 - L1ME4a LINE L1 -2190 5618 5414 258 32 0 0 chr1 163528359 163528390 -118665274 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 238 239 30 0 chr1 163529521 163529588 -118664076 + MER5A DNA MER1_type 26 94 -95 302 260 191 23 chr1 163529775 163529948 -118663716 + MER63A DNA MER1_type 2 203 -7 2280 135 20 36 chr1 163530360 163530592 -118663072 - MLT1B LTR MaLR 0 624 390 2315 117 5 62 chr1 163530592 163530852 -118662812 - THE1B LTR MaLR 0 364 132 2098 146 3 0 chr1 163530852 163531160 -118662504 + AluSx SINE Alu 1 309 -3 2315 117 5 62 chr1 163531160 163531285 -118662379 - THE1B LTR MaLR -232 132 1 2280 135 20 36 chr1 163531285 163531445 -118662219 - MLT1B LTR MaLR -234 390 1 25 0 0 0 chr1 163532268 163532293 -118661371 + AT_rich Low_complexity Low_complexity 1 25 0 1721 184 0 23 chr1 163532602 163532911 -118660753 - AluJb SINE Alu -10 302 1 2129 121 22 61 chr1 163534016 163534379 -118659285 + MLT2D LTR ERVL 1 349 -65 207 0 0 0 chr1 163534379 163534402 -118659262 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 2223 75 64 0 chr1 163538121 163538403 -118655261 + AluSx SINE Alu 2 301 -11 2333 74 13 0 chr1 163538523 163538822 -118654842 + AluSc SINE Alu 2 304 -5 2403 70 0 16 chr1 163539158 163539474 -118654190 + AluY SINE Alu 1 311 0 1887 115 93 0 chr1 163539832 163540102 -118653562 + AluSx SINE Alu 1 295 -17 355 195 13 13 chr1 163540137 163540214 -118653450 - MER4B-int LTR ERV1 -916 5842 5766 833 198 18 0 chr1 163540232 163540399 -118653265 + AluJb SINE Alu 140 309 -3 237 85 0 0 chr1 163540693 163540740 -118652924 - LTR66 LTR ERVL -169 441 395 255 152 0 0 chr1 163540747 163540793 -118652871 + (TA)n Simple_repeat Simple_repeat 2 47 0 1062 149 6 0 chr1 163541018 163541192 -118652472 + FRAM SINE Alu 1 174 -2 713 235 33 116 chr1 163541405 163541827 -118651837 + LTR56-int LTR ERV1 4644 5030 -93 2465 18 67 0 chr1 163541878 163542160 -118651504 + AluY SINE Alu 1 301 -10 468 186 42 34 chr1 163542182 163542300 -118651364 + LTR56 LTR ERV1 1 119 -326 266 339 9 0 chr1 163542509 163542624 -118651040 + Charlie4 DNA MER1_type 1838 1953 -8 372 341 39 0 chr1 163543056 163543185 -118650479 + U1 snRNA snRNA 2 135 -30 1180 182 107 65 chr1 163543348 163543735 -118649929 + LTR4 LTR ERV1 212 596 0 255 61 0 0 chr1 163543735 163543768 -118649896 + U1 snRNA snRNA 133 165 0 978 185 62 5 chr1 163544181 163544251 -118649413 - AluJb SINE Alu -106 206 141 229 26 53 0 chr1 163544251 163544289 -118649375 + (TTG)n Simple_repeat Simple_repeat 2 41 0 978 185 62 5 chr1 163544289 163544413 -118649251 - AluJb SINE Alu -171 141 1 278 258 119 40 chr1 163544555 163544706 -118648958 + REP3 LTR ERV 1 163 -399 258 298 113 7 chr1 163545139 163545290 -118648374 + L2 LINE L2 2351 2517 -797 1857 182 68 44 chr1 163545344 163545436 -118648228 + LOR1b LTR ERV1 1 89 -372 2646 48 0 7 chr1 163545436 163545746 -118647918 + AluY SINE Alu 1 308 -3 1857 182 68 44 chr1 163545746 163546081 -118647583 + LOR1b LTR ERV1 89 438 -23 1653 137 0 0 chr1 163546895 163547128 -118646536 + AluSx SINE Alu 1 233 -79 247 178 0 0 chr1 163547382 163547427 -118646237 + L1MC4 LINE L1 6659 6703 -1339 225 217 0 0 chr1 163547387 163547433 -118646231 - L1MC4 LINE L1 -1339 6703 6658 * 268 217 22 43 chr1 163547433 163547525 -118646139 - L1MC4 LINE L1 -1339 6703 6614 372 94 0 0 chr1 163547530 163547583 -118646081 + (TA)n Simple_repeat Simple_repeat 2 54 0 637 188 0 0 chr1 163547592 163547709 -118645955 - FLAM_C SINE Alu -16 117 1 1015 203 134 96 chr1 163547810 163548362 -118645302 + L1MEc LINE L1 1566 2138 -4258 253 260 63 9 chr1 163548383 163548493 -118645171 + L1MC/D LINE L1 5625 5737 -450 666 86 0 0 chr1 163549115 163549208 -118644456 + AluJb SINE Alu 205 297 -15 543 105 0 0 chr1 163549804 163549880 -118643784 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 279 0 0 0 chr1 163549889 163549920 -118643744 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1921 103 4 7 chr1 163549930 163550211 -118643453 - AluSc SINE Alu -29 280 1 749 167 45 8 chr1 163550340 163550472 -118643192 - AluJo SINE Alu -169 143 7 1208 195 55 55 chr1 163550626 163550918 -118642746 - AluJo SINE Alu -20 292 1 506 146 0 0 chr1 163550949 163551031 -118642633 - AluSg1 SINE Alu -2 307 226 942 119 126 0 chr1 163551031 163551174 -118642490 - AluSg1 SINE Alu -148 161 1 850 214 0 6 chr1 163551314 163551473 -118642191 - FRAM SINE Alu -19 157 1 265 194 45 30 chr1 163551512 163551646 -118642018 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 916 130 0 0 chr1 163551651 163551774 -118641890 - FLAM_C SINE Alu -20 123 1 1702 186 3 3 chr1 163551795 163552086 -118641578 - AluJb SINE Alu -21 291 1 2134 129 0 0 chr1 163553212 163553506 -118640158 - AluSx SINE Alu -18 294 1 1521 180 3 51 chr1 163553981 163554292 -118639372 + AluJo SINE Alu 1 296 -16 592 215 0 0 chr1 163554330 163554451 -118639213 + AluJo SINE Alu 2 122 -180 439 222 30 0 chr1 163554462 163554561 -118639103 + AluJo SINE Alu 180 281 -31 2001 124 13 13 chr1 163554681 163554988 -118638676 + AluSx SINE Alu 1 307 -5 412 200 0 33 chr1 163554991 163555081 -118638583 + LTR56 LTR ERV1 20 106 -339 1479 166 0 47 chr1 163555105 163555382 -118638282 - AluSx SINE Alu -14 298 35 1447 211 24 15 chr1 163555407 163555769 -118637895 + LTR56 LTR ERV1 97 435 -2 3345 164 42 32 chr1 163555845 163555942 -118637722 - LTR51 LTR ERV1 0 671 577 234 0 0 0 chr1 163555942 163555968 -118637696 + (GA)n Simple_repeat Simple_repeat 2 27 0 3345 164 42 32 chr1 163555968 163556534 -118637130 - LTR51 LTR ERV1 -94 577 1 1974 131 0 3 chr1 163557995 163558307 -118635357 + AluSg SINE Alu 1 311 0 1202 176 8 44 chr1 163558697 163558947 -118634717 - AluJo SINE Alu -28 284 44 2211 114 10 0 chr1 163559276 163559574 -118634090 + AluSx SINE Alu 1 301 -11 271 334 106 39 chr1 163559942 163560328 -118633336 + LTR56-int LTR ERV1 2142 2553 -2094 855 232 0 0 chr1 163560587 163560738 -118632926 - FRAM SINE Alu -11 155 5 180 111 0 0 chr1 163561136 163561163 -118632501 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 1762 163 0 0 chr1 163561502 163561778 -118631886 + AluJb SINE Alu 21 296 -16 697 214 42 18 chr1 163561780 163561948 -118631716 + AluJb SINE Alu 136 307 -5 460 189 126 0 chr1 163562226 163562337 -118631327 + LTR56-int LTR ERV1 4776 4900 -223 1947 158 7 0 chr1 163562391 163562682 -118630982 - AluJo SINE Alu -19 293 1 1719 160 47 72 chr1 163562854 163563183 -118630481 + LTR56 LTR ERV1 12 329 -116 2173 63 39 14 chr1 163563183 163563493 -118630171 + AluY SINE Alu 1 311 0 1719 160 47 72 chr1 163563493 163563608 -118630056 + LTR56 LTR ERV1 329 445 0 300 217 74 0 chr1 163563629 163563759 -118629905 + L1ME2 LINE L1 5745 5891 -273 2798 147 7 80 chr1 163563774 163564327 -118629337 + LTR8 LTR ERV1 1 513 -178 475 179 0 0 chr1 163564339 163564417 -118629247 + LTR8 LTR ERV1 614 691 0 407 279 29 7 chr1 163564962 163565102 -118628562 + Charlie4 DNA MER1_type 1815 1957 -4 583 173 68 49 chr1 163565504 163565666 -118627998 + U1 snRNA snRNA 1 165 0 2343 77 0 7 chr1 163565951 163566249 -118627415 + AluY SINE Alu 1 296 -15 265 235 10 20 chr1 163568865 163568963 -118624701 + (TA)n Simple_repeat Simple_repeat 2 98 0 786 218 0 123 chr1 163568996 163569216 -118624448 - MER77 LTR ERV1 -412 193 1 388 131 0 0 chr1 163569462 163569523 -118624141 + MER41B LTR ERV1 487 547 -88 22 0 0 0 chr1 163570661 163570683 -118622981 + AT_rich Low_complexity Low_complexity 1 22 0 2850 30 3 0 chr1 163575329 163575660 -118618004 - L1PA3 LINE L1 -481 5674 5343 4649 24 6 0 chr1 163575660 163576167 -118617497 + L1PA3 LINE L1 5642 6155 0 2196 74 30 0 chr1 163576297 163576568 -118617096 - AluSc SINE Alu -17 292 14 591 198 80 104 chr1 163577004 163577115 -118616549 + MER106B DNA MER1_type 30 142 -917 3204 159 11 25 chr1 163577115 163577642 -118616022 - MLT2B1 LTR ERVL 0 520 1 591 198 80 104 chr1 163577642 163577742 -118615922 + MER106B DNA MER1_type 142 1059 0 220 226 0 19 chr1 163577876 163577929 -118615735 - MIR SINE MIR -19 243 192 2603 55 3 0 chr1 163578475 163578785 -118614879 + AluY SINE Alu 1 311 0 2298 60 47 3 chr1 163579937 163580237 -118613427 + AluSq SINE Alu 1 313 0 1865 74 8 4 chr1 163580484 163580774 -118612890 - AluY SINE Alu 0 329 39 23 33 0 0 chr1 163581153 163581183 -118612481 + AT_rich Low_complexity Low_complexity 1 30 0 890 306 86 16 chr1 163581199 163581581 -118612083 - L2 LINE L2 -353 2961 2553 1937 152 65 22 chr1 163581936 163582259 -118611405 + MER1B DNA MER1_type 1 337 0 427 316 129 0 chr1 163582457 163582628 -118611036 - MIR SINE MIR -4 258 66 1550 198 145 56 chr1 163583720 163584238 -118609426 - MLT1F1 LTR MaLR 0 555 1 228 288 0 15 chr1 163584720 163584786 -118608878 - Charlie8 DNA MER1_type -8 2409 2345 905 164 28 17 chr1 163585583 163585760 -118607904 - MER96B DNA MER1_type? -238 179 1 1597 170 10 10 chr1 163586090 163586384 -118607280 - AluJb SINE Alu -14 298 5 2612 68 0 0 chr1 163586906 163587215 -118606449 - AluY SINE Alu -2 309 1 584 216 106 5 chr1 163587263 163587349 -118606315 + L1MC4 LINE L1 7817 7893 -149 282 73 0 0 chr1 163587349 163587390 -118606274 + (TG)n Simple_repeat Simple_repeat 2 42 0 584 216 106 5 chr1 163587390 163587502 -118606162 + L1MC4 LINE L1 7893 8035 -7 1728 163 3 24 chr1 163587667 163587961 -118605703 - AluJo SINE Alu -15 297 10 264 245 0 0 chr1 163587993 163588042 -118605622 - L1MC4 LINE L1 -360 7682 7634 258 32 0 0 chr1 163588586 163588617 -118605047 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 345 24 0 0 chr1 163588681 163588723 -118604941 + (CA)n Simple_repeat Simple_repeat 2 43 0 866 295 19 8 chr1 163588978 163589236 -118604428 - MIR SINE MIR 0 262 2 595 84 63 0 chr1 163589377 163589472 -118604192 - L1MA7 LINE L1 -5 6286 6186 182 359 57 82 chr1 163589539 163589698 -118603966 + L2 LINE L2 3002 3156 -116 43575 49 5 3 chr1 163590079 163596221 -118597443 - L1PA5 LINE L1 0 6154 2 192 260 40 0 chr1 163596423 163596473 -118597191 + MIR SINE MIR 101 152 -56 700 266 23 19 chr1 163596486 163596700 -118596964 + L2 LINE L2 3099 3313 0 1945 213 134 22 chr1 163596741 163597239 -118596425 - MLT1H1 LTR MaLR -1 554 1 333 273 80 90 chr1 163597260 163597648 -118596016 - MLT1H1-int LTR MaLR -27 1344 961 297 146 0 0 chr1 163598191 163598239 -118595425 + 5S rRNA rRNA 1 48 -73 241 271 31 31 chr1 163598580 163598676 -118594988 - MLT1A1-int LTR MaLR -1550 101 6 1731 247 102 33 chr1 163598681 163599199 -118594465 - MLT1H1 LTR MaLR -1 554 1 701 290 27 13 chr1 163599422 163599646 -118594018 + MIR SINE MIR 2 228 -34 2531 46 7 0 chr1 163599972 163600275 -118593389 - AluY SINE Alu -6 305 1 1016 233 41 96 chr1 163600360 163600747 -118592917 - MLT1I LTR MaLR -7 402 37 402 272 65 24 chr1 163600791 163600992 -118592672 + MLT1H LTR MaLR 10 253 -246 21 57 0 0 chr1 163601294 163601329 -118592335 + AT_rich Low_complexity Low_complexity 1 35 0 1547 188 18 99 chr1 163601400 163601793 -118591871 - MLT1A1 LTR MaLR -4 361 1 302 320 112 8 chr1 163601807 163602087 -118591577 + L1ME4a LINE L1 5673 5983 -138 922 285 87 77 chr1 163605332 163605816 -118587848 + L3 LINE CR1 899 1377 -200 2516 68 7 0 chr1 163605816 163606125 -118587539 + AluSp SINE Alu 1 311 -2 2440 56 0 13 chr1 163606125 163606427 -118587237 + AluY SINE Alu 1 298 -13 922 285 87 77 chr1 163606427 163606527 -118587137 + L3 LINE CR1 1376 1490 -87 27 29 0 0 chr1 163606588 163606622 -118587042 + AT_rich Low_complexity Low_complexity 1 34 0 2263 246 56 4 chr1 163606658 163607194 -118586470 - L1ME3A LINE L1 -35 6135 5572 2486 74 0 0 chr1 163607237 163607546 -118586118 + AluY SINE Alu 1 309 -2 639 257 34 6 chr1 163607550 163607729 -118585935 + L1ME LINE L1 5352 5535 -629 742 173 144 24 chr1 163607729 163607937 -118585727 + MER112 DNA MER1_type 17 249 -11 1988 138 3 0 chr1 163608025 163608332 -118585332 + AluSx SINE Alu 1 308 0 200 279 0 73 chr1 163608350 163608418 -118585246 - L2 LINE L2 -41 3231 3169 507 274 153 23 chr1 163608534 163608749 -118584915 - MIR SINE MIR -1 261 19 2730 164 50 38 chr1 163609283 163609325 -118584339 - MLT1D LTR MaLR 0 505 465 2415 91 0 0 chr1 163609325 163609623 -118584041 - AluSx SINE Alu -14 298 1 2730 164 50 38 chr1 163609623 163610079 -118583585 - MLT1D LTR MaLR -40 465 1 204 283 19 0 chr1 163610669 163610722 -118582942 - MIR SINE MIR -138 124 71 2256 109 3 0 chr1 163611806 163612117 -118581547 + AluSx SINE Alu 1 312 0 312 253 148 31 chr1 163612296 163612458 -118581206 - L1ME LINE L1 -386 5735 5555 181 273 0 0 chr1 163612510 163612554 -118581110 - MIR SINE MIR -115 147 104 269 203 0 31 chr1 163614178 163614242 -118579422 + CT-rich Low_complexity Low_complexity 2 63 0 320 218 68 30 chr1 163614366 163614499 -118579165 + L1ME4a LINE L1 5982 6119 -2 634 282 88 5 chr1 163616014 163616230 -118577434 + MIR SINE MIR 3 236 -26 2886 13 0 0 chr1 163616999 163617311 -118576353 - AluYb8 SINE Alu -6 312 1 289 305 106 43 chr1 163617801 163617942 -118575722 + L2 LINE L2 3118 3267 -5 32 0 0 0 chr1 163618036 163618068 -118575596 + AT_rich Low_complexity Low_complexity 1 32 0 510 17 0 0 chr1 163619436 163619495 -118574169 + (TG)n Simple_repeat Simple_repeat 2 60 0 310 122 122 73 chr1 163620041 163620123 -118573541 - MIR3 SINE MIR -27 181 96 555 184 87 102 chr1 163620241 163620447 -118573217 - MER102b DNA MER1_type -2 339 137 2418 78 7 0 chr1 163621000 163621308 -118572356 + AluSp SINE Alu 1 310 -3 858 253 189 43 chr1 163621415 163622010 -118571654 + L2 LINE L2 2641 3309 -4 626 288 175 48 chr1 163622235 163622784 -118570880 + L2 LINE L2 2646 3258 -14 1213 204 44 19 chr1 163622988 163623258 -118570406 - AluJo SINE Alu -1 311 35 2206 100 3 0 chr1 163623604 163623893 -118569771 + AluSx SINE Alu 1 290 -22 33 0 0 0 chr1 163623893 163623926 -118569738 + AT_rich Low_complexity Low_complexity 1 33 0 482 301 124 11 chr1 163624416 163624624 -118569040 - MIR SINE MIR -21 241 9 2159 109 0 0 chr1 163624729 163625033 -118568631 - AluSx SINE Alu 0 304 1 24 0 0 0 chr1 163625110 163625134 -118568530 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr1 163625636 163625663 -118568001 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 698 164 14 0 chr1 163626161 163626301 -118567363 + GA-rich Low_complexity Low_complexity 2 143 0 310 186 23 12 chr1 163626322 163626408 -118567256 + GA-rich Low_complexity Low_complexity 2 88 0 353 295 131 30 chr1 163626895 163627132 -118566532 + MIR SINE MIR 1 261 -1 1163 237 85 75 chr1 163627213 163627269 -118566395 - MLT1H LTR MaLR 0 549 495 873 215 86 14 chr1 163627269 163627478 -118566186 + MER58A DNA MER1_type 1 224 0 1163 237 85 75 chr1 163627478 163627915 -118565749 - MLT1H LTR MaLR -54 495 51 2901 159 43 4 chr1 163628473 163628962 -118564702 - MER44D DNA MER2_type -39 566 4 231 114 0 0 chr1 163629418 163629453 -118564211 + (A)n Simple_repeat Simple_repeat 1 35 0 211 382 70 32 chr1 163631635 163631792 -118561872 - MIR SINE MIR -16 246 84 437 243 58 64 chr1 163631966 163632068 -118561596 - MIR SINE MIR 0 262 160 5743 68 3 1 chr1 163632068 163632769 -118560895 + L1PA7 LINE L1 5453 6154 0 437 243 58 64 chr1 163632769 163632839 -118560825 - MIR SINE MIR -102 160 91 349 367 209 12 chr1 163633081 163633416 -118560248 + L2 LINE L2 2867 3267 -5 1860 143 33 3 chr1 163633582 163633882 -118559782 - AluSx SINE Alu -3 309 1 441 330 79 31 chr1 163633994 163634221 -118559443 - MIR SINE MIR 0 262 25 25 51 0 0 chr1 163635166 163635205 -118558459 + AT_rich Low_complexity Low_complexity 1 39 0 2140 125 3 0 chr1 163635284 163635580 -118558084 + AluSx SINE Alu 1 297 -15 467 329 115 21 chr1 163635995 163636229 -118557435 - MIR SINE MIR -1 261 6 2481 76 7 0 chr1 163636371 163636674 -118556990 + AluSx SINE Alu 1 305 -7 251 260 63 24 chr1 163636912 163637039 -118556625 + L1ME4a LINE L1 5968 6099 -22 549 345 96 59 chr1 163637042 163637782 -118555882 - L2 LINE L2 -26 3246 2456 412 310 43 0 chr1 163637875 163637991 -118555673 + L2 LINE L2 3122 3242 -30 230 309 37 113 chr1 163638208 163638561 -118555103 - L2 LINE L2 -94 3178 2853 1682 143 3 126 chr1 163638670 163638854 -118554810 - AluJo SINE Alu -1 301 177 1928 108 8 0 chr1 163638854 163639122 -118554542 - AluSp SINE Alu -10 303 34 1682 143 3 126 chr1 163639122 163639279 -118554385 - AluJo SINE Alu -125 177 2 3433 159 29 5 chr1 163640585 163641176 -118552488 - L1MB7 LINE L1 0 6184 5580 198 0 0 0 chr1 163641211 163641233 -118552431 + (T)n Simple_repeat Simple_repeat 1 22 0 431 316 68 16 chr1 163641405 163641595 -118552069 + MIR SINE MIR 24 223 -39 408 387 7 0 chr1 163642211 163642361 -118551303 - L3 LINE CR1 -5 1572 1422 244 231 0 0 chr1 163642441 163642493 -118551171 - L3 LINE CR1 -192 1385 1334 270 307 11 11 chr1 163642728 163642816 -118550848 - MIR SINE MIR -155 107 20 25 31 0 0 chr1 163642944 163642976 -118550688 + AT_rich Low_complexity Low_complexity 1 32 0 2229 123 0 0 chr1 163644090 163644392 -118549272 - AluSx SINE Alu -10 302 1 1496 235 40 123 chr1 163644659 163645836 -118547828 - L2 LINE L2 0 3313 2230 202 250 0 0 chr1 163646017 163646065 -118547599 - L2 LINE L2 -1 3312 3265 251 344 147 23 chr1 163646457 163646716 -118546948 - L2 LINE L2 -995 2319 2029 254 237 93 129 chr1 163646939 163646975 -118546689 - MIR3 SINE MIR -21 187 151 2304 98 0 0 chr1 163646975 163647271 -118546393 + AluY SINE Alu 1 296 -15 254 237 93 129 chr1 163647271 163647373 -118546291 - MIR3 SINE MIR -57 151 54 203 333 21 31 chr1 163647627 163647723 -118545941 + L2 LINE L2 3001 3095 -177 618 227 141 11 chr1 163647725 163647910 -118545754 - MER112 DNA MER1_type -5 255 47 414 164 22 104 chr1 163649638 163649772 -118543892 + MIR3 SINE MIR 38 160 -48 223 299 35 11 chr1 163649803 163649890 -118543774 - MER5A DNA MER1_type -21 168 80 1210 190 37 44 chr1 163649935 163650112 -118543552 - AluJo SINE Alu -17 295 119 2123 125 3 7 chr1 163650112 163650417 -118543247 + AluSx SINE Alu 1 304 -8 1210 190 37 44 chr1 163650417 163650534 -118543130 - AluJo SINE Alu -193 119 3 2025 90 49 0 chr1 163651643 163651930 -118541734 - AluSx SINE Alu 0 304 5 1812 124 6 87 chr1 163652518 163652695 -118540969 - AluJb SINE Alu -15 297 156 441 36 0 0 chr1 163652695 163652750 -118540914 + (TG)n Simple_repeat Simple_repeat 2 56 0 1812 124 6 87 chr1 163652750 163652895 -118540769 - AluJb SINE Alu -156 156 1 253 239 30 15 chr1 163652971 163653038 -118540626 + MIR SINE MIR 91 158 -104 21 0 0 0 chr1 163654030 163654051 -118539613 + AT_rich Low_complexity Low_complexity 1 21 0 616 265 153 14 chr1 163655032 163655255 -118538409 + MIR SINE MIR 9 262 0 336 244 85 0 chr1 163655754 163655836 -118537828 + MIR SINE MIR 42 130 -78 3921 161 41 14 chr1 163656418 163657126 -118536538 + L1MB3 LINE L1 5447 6173 -10 1499 185 32 42 chr1 163657143 163657451 -118536213 + AluJo SINE Alu 1 305 -7 271 271 24 24 chr1 163657929 163658014 -118535650 - L2 LINE L2 -8 3305 3221 2100 121 13 7 chr1 163658157 163658463 -118535201 - AluSg SINE Alu 0 310 3 2293 107 0 0 chr1 163658475 163658773 -118534891 - AluSx SINE Alu -12 300 3 224 299 102 32 chr1 163658774 163658931 -118534733 - L2 LINE L2 -298 2974 2807 285 284 74 0 chr1 163658950 163659031 -118534633 - L2 LINE L2 0 3272 3186 330 350 176 19 chr1 163659244 163659658 -118534006 - L2 LINE L2 -373 2941 2463 339 243 56 19 chr1 163659670 163659777 -118533887 + MIR3 SINE MIR 91 201 -7 183 271 68 0 chr1 163660297 163660356 -118533308 - MIR3 SINE MIR -4 204 142 592 167 0 0 chr1 163660357 163660459 -118533205 - L1MD3 LINE L1 0 7995 7894 515 271 41 0 chr1 163660464 163660586 -118533078 - MIR SINE MIR -57 151 25 1821 116 170 78 chr1 163661568 163661938 -118531726 - MER4A LTR ERV1 0 664 261 366 146 0 0 chr1 163661938 163661993 -118531671 - MER4A LTR ERV1 -566 98 44 11658 192 29 48 chr1 163662004 163662361 -118531303 - L1PB1 LINE L1 -2 6865 6503 479 81 0 14 chr1 163662361 163662435 -118531229 + (TA)n Simple_repeat Simple_repeat 2 74 0 11658 192 29 48 chr1 163662435 163663809 -118529855 - L1PB1 LINE L1 -364 6503 5105 189 0 0 0 chr1 163663809 163663830 -118529834 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 11658 192 29 48 chr1 163663830 163664838 -118528826 - L1PB1 LINE L1 -1762 5105 4080 1543 65 0 0 chr1 163664838 163665024 -118528640 - AluY SINE Alu -8 303 118 11658 192 29 48 chr1 163665024 163665053 -118528611 - L1PB1 LINE L1 -2787 4080 4052 2115 42 0 0 chr1 163665053 163665289 -118528375 - L1PA3 LINE L1 -3 6152 5917 11658 192 29 48 chr1 163665289 163665431 -118528233 - L1PB1 LINE L1 -2815 4052 3909 1156 53 0 0 chr1 163665431 163665562 -118528102 - AluY SINE Alu -179 132 2 11658 192 29 48 chr1 163665562 163666453 -118527211 - L1PB1 LINE L1 -2958 3909 3003 1769 132 104 4 chr1 163666453 163666733 -118526931 + AluSp SINE Alu 1 308 -5 11658 192 29 48 chr1 163666733 163667799 -118525865 - L1PB1 LINE L1 -3864 3003 1959 777 246 5 0 chr1 163667808 163667999 -118525665 - L1PB1 LINE L1 -6666 197 6 295 140 35 18 chr1 163668002 163668059 -118525605 - MER4A LTR ERV1 -606 58 1 380 286 62 0 chr1 163668886 163668998 -118524666 - MIR SINE MIR -22 240 122 495 355 12 6 chr1 163669428 163669597 -118524067 + L3b LINE CR1 1155 1324 -259 247 260 13 26 chr1 163669626 163669703 -118523961 - L2 LINE L2 -1 3312 3237 377 222 161 0 chr1 163669703 163669784 -118523880 - L1ME LINE L1 -471 5695 5602 249 252 37 84 chr1 163669784 163669891 -118523773 - L2 LINE L2 -84 3229 3128 275 292 56 22 chr1 163669994 163670083 -118523581 - MIR SINE MIR -13 249 158 648 217 11 94 chr1 163670098 163670278 -118523386 + AluJb SINE Alu 128 292 -20 5123 128 34 7 chr1 163670278 163671096 -118522568 + L1PA16 LINE L1 5323 6162 -4 2276 241 45 8 chr1 163671227 163671742 -118521922 - MLT1E LTR MaLR -59 534 1 2084 202 56 33 chr1 163672004 163672518 -118521146 - L1ME1 LINE L1 -41 6125 5600 1840 151 60 23 chr1 163672518 163672867 -118520797 - MER46B DNA MER2_type -1 235 -1 239 208 75 0 chr1 163672871 163672924 -118520740 - L1ME1 LINE L1 -559 5611 5555 4646 257 46 45 chr1 163672925 163674001 -118519663 - L2 LINE L2 -277 3036 1913 2364 90 0 0 chr1 163674001 163674291 -118519373 + AluSx SINE Alu 2 291 -21 4646 257 46 45 chr1 163674291 163674769 -118518895 - L2 LINE L2 -1400 1913 1437 2206 96 0 10 chr1 163674776 163675099 -118518565 - AluSg SINE Alu 0 310 1 349 284 86 9 chr1 163675360 163675476 -118518188 - L2 LINE L2 0 3272 3148 1400 171 88 30 chr1 163675735 163676040 -118517624 - MER33 DNA MER1_type 0 324 2 815 158 0 43 chr1 163677064 163677203 -118516461 - FLAM_C SINE Alu 0 133 1 664 124 0 99 chr1 163677203 163677324 -118516340 - L1MC1 LINE L1 -9 6324 6216 251 213 255 0 chr1 163677432 163677526 -118516138 - MIR SINE MIR -6 256 139 231 167 0 0 chr1 163677611 163677653 -118516011 - MER116 DNA Mariner -38 42 1 211 347 40 13 chr1 163677653 163677728 -118515936 - MIR SINE MIR -183 79 3 333 248 88 64 chr1 163678068 163678193 -118515471 + L2 LINE L2 3186 3313 0 213 94 0 0 chr1 163678240 163678272 -118515392 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 396 0 0 0 chr1 163678274 163678318 -118515346 + (CA)n Simple_repeat Simple_repeat 2 45 0 1740 106 22 97 chr1 163679775 163680118 -118513546 - AluSq SINE Alu 0 313 1 231 357 12 0 chr1 163680555 163680639 -118513025 - L2 LINE L2 -189 3083 2999 515 281 15 59 chr1 163681452 163681722 -118511942 - L1MC5 LINE L1 -95 7866 7609 2355 63 17 3 chr1 163681933 163682234 -118511430 + AluY SINE Alu 1 305 -6 2369 57 3 0 chr1 163682262 163682545 -118511119 - AluY SINE Alu -27 284 1 272 173 0 0 chr1 163682546 163682598 -118511066 - Alu SINE Alu -3 297 246 2253 101 0 0 chr1 163682601 163682897 -118510767 - AluSx SINE Alu -16 296 1 2501 53 0 0 chr1 163683127 163683429 -118510235 - AluY SINE Alu -6 305 4 597 266 57 24 chr1 163683433 163683645 -118510019 - MIR SINE MIR -22 240 24 180 231 259 28 chr1 163684152 163684260 -118509404 - L2 LINE L2 -575 2739 2607 518 268 20 17 chr1 163684694 163684914 -118508750 - MIR SINE MIR 0 262 2 215 368 40 0 chr1 163685085 163685161 -118508503 + MIR3 SINE MIR 108 186 -22 624 238 14 75 chr1 163685357 163685571 -118508093 - MIR SINE MIR -29 233 33 191 304 122 61 chr1 163685981 163686096 -118507568 - MIR SINE MIR -64 144 23 29 0 0 0 chr1 163686186 163686215 -118507449 + AT_rich Low_complexity Low_complexity 1 29 0 328 203 24 130 chr1 163686223 163686346 -118507318 - MIR SINE MIR -32 230 121 787 176 16 43 chr1 163686638 163686826 -118506838 - MER53 DNA DNA -3 186 4 2230 122 0 6 chr1 163687827 163688138 -118505526 - AluSx SINE Alu -3 309 1 21 0 0 0 chr1 163688536 163688557 -118505107 + AT_rich Low_complexity Low_complexity 1 21 0 766 302 81 18 chr1 163689297 163689678 -118503986 + L1MC4a LINE L1 5509 5913 -1895 21 0 0 0 chr1 163689812 163689833 -118503831 + AT_rich Low_complexity Low_complexity 1 21 0 4055 170 66 20 chr1 163689838 163689892 -118503772 + L1P4 LINE L1 4282 4332 -1834 2414 51 3 17 chr1 163689892 163690187 -118503477 + AluY SINE Alu 3 293 -18 4055 170 66 20 chr1 163690187 163691386 -118502278 + L1P4 LINE L1 4332 5599 -567 400 305 100 80 chr1 163692171 163692379 -118501285 - L2 LINE L2 0 3272 3070 1980 156 2 101 chr1 163692379 163692784 -118500880 + MLT1A1 LTR MaLR 1 365 0 400 305 100 80 chr1 163692784 163693092 -118500572 - L2 LINE L2 -202 3070 2742 320 333 18 9 chr1 163693089 163693200 -118500464 + L2 LINE L2 2587 2698 -616 * 227 353 84 21 chr1 163693329 163693519 -118500145 + L2 LINE L2 2686 2887 -427 192 266 303 0 chr1 163693526 163693635 -118500029 - MIR SINE MIR 0 262 121 2349 97 0 28 chr1 163694246 163694566 -118499098 - AluSx SINE Alu -1 311 1 2225 73 29 0 chr1 163694607 163694880 -118498784 + AluSc SINE Alu 13 293 -16 3274 98 32 2 chr1 163695194 163695726 -118497938 - L1P4 LINE L1 -428 5733 5189 3719 136 69 24 chr1 163695898 163696918 -118496746 - Tigger3b DNA MER2_type 0 1232 1 184 374 40 40 chr1 163696984 163697083 -118496581 + L2 LINE L2 3169 3267 -5 1927 203 168 59 chr1 163697588 163698178 -118495486 - MLT1E1 LTR MaLR 0 654 1 2011 79 102 0 chr1 163698446 163698712 -118494952 - AluSx SINE Alu -19 293 1 506 18 0 0 chr1 163699411 163699468 -118494196 - U2 snRNA snRNA -131 57 1 331 295 202 0 chr1 163699471 163699596 -118494068 + MIR3 SINE MIR 58 203 -5 506 195 124 87 chr1 163700466 163700748 -118492916 - MER20B DNA MER1_type -427 356 2 191 410 24 0 chr1 163700757 163700840 -118492824 - L2 LINE L2 -92 3180 3096 262 304 71 45 chr1 163703070 163703182 -118490482 - L2 LINE L2 -4 3268 3154 2080 129 126 9 chr1 163703386 163703712 -118489952 - MLT1A1 LTR MaLR -1 364 1 2279 109 0 0 chr1 163704241 163704544 -118489120 + AluSg SINE Alu 1 303 -7 24 0 0 0 chr1 163704602 163704626 -118489038 + AT_rich Low_complexity Low_complexity 1 24 0 188 249 72 58 chr1 163704642 163704809 -118488855 - L2 LINE L2 0 3272 3098 1002 204 138 0 chr1 163704809 163705005 -118488659 - MER58A DNA MER1_type 0 224 2 188 249 72 58 chr1 163705005 163705047 -118488617 - L2 LINE L2 -174 3098 3058 * 576 276 107 36 chr1 163705043 163705268 -118488396 - L2 LINE L2 -940 2374 2134 1874 92 75 55 chr1 163705917 163706209 -118487455 + AluSg SINE Alu 1 298 -12 225 269 0 0 chr1 163706356 163706408 -118487256 + L2 LINE L2 3216 3267 -5 1266 144 16 11 chr1 163707517 163707705 -118485959 + MER5A DNA MER1_type 1 189 0 211 277 46 0 chr1 163707725 163707790 -118485874 - MIR SINE MIR -69 139 72 21 57 0 0 chr1 163707833 163707868 -118485796 + AT_rich Low_complexity Low_complexity 1 35 0 796 73 0 0 chr1 163708042 163708138 -118485526 + AluSg/x SINE Alu 199 294 -15 870 204 41 146 chr1 163708323 163708568 -118485096 - L1ME1 LINE L1 0 6166 5960 271 191 0 0 chr1 163708568 163708610 -118485054 - 5S rRNA rRNA -79 42 1 870 204 41 146 chr1 163708610 163708830 -118484834 - L1ME1 LINE L1 -206 5960 5718 334 232 159 7 chr1 163708871 163709022 -118484642 - L1ME4a LINE L1 -20 6101 5928 23 78 0 0 chr1 163709103 163709154 -118484510 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr1 163709316 163709349 -118484315 + AT_rich Low_complexity Low_complexity 1 33 0 2413 122 117 10 chr1 163710116 163710501 -118483163 - MSTA LTR MaLR -2 426 1 589 225 5 43 chr1 163716562 163716647 -118477017 + L1M4 LINE L1 3028 3115 -3031 2071 114 0 13 chr1 163716647 163716953 -118476711 + AluSx SINE Alu 1 302 -10 589 225 5 43 chr1 163716953 163717076 -118476588 + L1M4 LINE L1 3115 3228 -2918 912 239 18 77 chr1 163717084 163717292 -118476372 + L1M4 LINE L1 3375 3559 -2587 2385 77 0 0 chr1 163717292 163717589 -118476075 - AluY SINE Alu -14 297 1 912 239 18 77 chr1 163717589 163717706 -118475958 + L1M4 LINE L1 3559 3681 -2465 293 148 19 0 chr1 163717708 163717762 -118475902 + L1M4 LINE L1 3901 3955 -2191 2230 107 7 0 chr1 163717773 163718081 -118475583 + AluSx SINE Alu 1 310 -2 653 257 55 9 chr1 163718131 163718349 -118475315 + L1M4 LINE L1 3964 4191 -1955 * 7638 221 50 75 chr1 163718335 163721189 -118472475 + L1MDa LINE L1 29 2848 -3873 414 264 0 19 chr1 163721772 163721927 -118471737 - U1 snRNA snRNA -10 155 4 180 0 0 0 chr1 163722640 163722660 -118471004 + (TC)n Simple_repeat Simple_repeat 1 20 0 2220 75 0 4 chr1 163722660 163722938 -118470726 - AluSc SINE Alu -32 277 1 243 0 0 0 chr1 163722944 163722971 -118470693 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1126 258 69 41 chr1 163723162 163723945 -118469719 - L1MEc LINE L1 -4258 2138 1288 306 196 2 16 chr1 163723973 163724060 -118469604 + AluSp SINE Alu 66 133 -170 548 279 22 22 chr1 163724082 163724311 -118469353 - L1MEc LINE L1 -5127 1269 1041 363 123 0 4 chr1 163724339 163724422 -118469242 - Alu SINE Alu 0 300 245 1896 64 0 17 chr1 163724626 163724884 -118468780 + AluY SINE Alu 63 316 0 2526 74 0 3 chr1 163725243 163725555 -118468109 + AluY SINE Alu 1 311 0 2315 88 3 0 chr1 163725767 163726086 -118467578 - AluSp SINE Alu 0 320 1 285 29 0 0 chr1 163726086 163726120 -118467544 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2201 107 4 0 chr1 163726120 163726401 -118467263 - AluSg SINE Alu -28 282 1 1688 118 3 40 chr1 163726413 163726709 -118466955 + L1PA11 LINE L1 5865 6149 -25 304 194 40 32 chr1 163727572 163727696 -118465968 + C-rich Low_complexity Low_complexity 4 128 0 200 309 11 11 chr1 163727711 163727805 -118465859 + CT-rich Low_complexity Low_complexity 2 95 0 207 275 229 18 chr1 163729219 163729328 -118464336 - L2 LINE L2 -2 3311 3180 364 302 119 22 chr1 163729939 163730207 -118463457 - L2 LINE L2 -1425 1889 1596 217 313 81 0 chr1 163730256 163730355 -118463309 - L2 LINE L2 -1842 1472 1366 315 304 14 43 chr1 163730487 163730625 -118463039 - L2 LINE L2 0 3313 3180 212 294 213 0 chr1 163730753 163730950 -118462714 - L2 LINE L2 -565 2749 2511 209 229 86 0 chr1 163733534 163733604 -118460060 + L3 LINE CR1 1308 1383 -194 198 0 0 0 chr1 163734426 163734448 -118459216 + (A)n Simple_repeat Simple_repeat 1 22 0 649 107 48 0 chr1 163734448 163734551 -118459113 - LOR1-int LTR ERV1 -5005 3115 3008 1192 313 23 23 chr1 163734832 163735314 -118458350 - L1MCc LINE L1 -5911 512 31 1462 205 46 61 chr1 163736180 163736575 -118457089 - MLT1B LTR MaLR -1 389 1 1237 122 0 0 chr1 163736604 163736776 -118456888 - AluSq SINE Alu -5 308 137 415 297 14 7 chr1 163737156 163737304 -118456360 - L2 LINE L2 -821 2493 2345 885 171 28 22 chr1 163737857 163738038 -118455626 + MER58 DNA MER1_type 2238 2419 -1 4351 168 12 4 chr1 163738203 163739238 -118454426 + L1PA16 LINE L1 5018 6059 -107 1715 248 54 18 chr1 163739391 163740007 -118453657 + L1M4 LINE L1 3038 3675 -2471 2898 10 0 0 chr1 163740130 163740438 -118453226 + AluYa5 SINE Alu 1 308 -3 2380 43 0 0 chr1 163741095 163741371 -118452293 - AluY SINE Alu -35 276 1 2030 136 7 7 chr1 163741609 163741917 -118451747 + AluSx SINE Alu 5 312 0 477 141 0 0 chr1 163742041 163742112 -118451552 - tRNA-Gly-GGG tRNA tRNA -3 71 1 304 311 9 28 chr1 163743127 163743233 -118450431 - L1MEc LINE L1 -4727 1669 1566 4813 62 0 0 chr1 163743355 163743950 -118449714 - L1PA7 LINE L1 -10 6144 5550 554 198 0 0 chr1 163743965 163744071 -118449593 + FLAM_C SINE Alu 2 107 -36 234 0 0 0 chr1 163744071 163744097 -118449567 + (TC)n Simple_repeat Simple_repeat 2 27 0 305 296 23 11 chr1 163744111 163744199 -118449465 - L1MC4 LINE L1 -1339 6703 6615 1227 205 36 36 chr1 163744559 163744598 -118449066 - MLT2B1 LTR ERVL -3 411 374 312 70 0 0 chr1 163744598 163744641 -118449023 + (CA)n Simple_repeat Simple_repeat 2 44 0 1227 205 36 36 chr1 163744641 163745009 -118448655 - MLT2B1 LTR ERVL -40 374 1 2315 113 0 3 chr1 163745152 163745462 -118448202 + AluSq SINE Alu 3 311 -2 52 41 0 0 chr1 163747326 163747399 -118446265 + GC_rich Low_complexity Low_complexity 1 73 0 21 71 0 0 chr1 163747457 163747499 -118446165 + GC_rich Low_complexity Low_complexity 1 42 0 5695 110 15 60 chr1 163747590 163747912 -118445752 + LOR1a-int LTR ERV1 3102 3437 -4683 1656 160 59 21 chr1 163747912 163748200 -118445464 + AluSx SINE Alu 1 299 -13 5695 110 15 60 chr1 163748200 163748883 -118444781 + LOR1a-int LTR ERV1 3437 4062 -4058 554 217 0 0 chr1 163748893 163749042 -118444622 - FLAM_C SINE Alu 0 186 38 5818 132 60 25 chr1 163749042 163750435 -118443229 + LOR1a-int LTR ERV1 3570 5538 -1050 1819 83 4 0 chr1 163750424 163750677 -118442987 + LOR1a-int LTR ERV1 5811 6064 -2056 * 502 176 0 0 chr1 163750676 163750767 -118442897 + LOR1a-int LTR ERV1 8030 8120 0 * 549 217 105 0 chr1 163750767 163750910 -118442754 + LOR1a LTR ERV1 1 158 -339 1964 122 0 4 chr1 163751028 163751298 -118442366 + AluSx SINE Alu 37 305 -7 385 250 86 0 chr1 163751300 163751428 -118442236 + L1MEc LINE L1 1655 1793 -4603 530 186 54 0 chr1 163751450 163751643 -118442021 + L1MEc LINE L1 1895 2138 -4258 249 298 48 0 chr1 163751676 163751780 -118441884 + L1MC/D LINE L1 5634 5742 -2066 2723 39 0 3 chr1 163751780 163752112 -118441552 - AluY SINE Alu 0 331 1 203 305 38 9 chr1 163752735 163752840 -118440824 - L2 LINE L2 -4 3309 3202 653 27 0 0 chr1 163753283 163753358 -118440306 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 310 317 68 42 chr1 163753839 163754077 -118439587 - L1MC4a LINE L1 -297 5824 5617 1598 175 20 14 chr1 163754077 163754374 -118439290 - AluJb SINE Alu -5 307 9 310 317 68 42 chr1 163754374 163754454 -118439210 - L1MC4a LINE L1 -504 5617 5541 1619 183 0 11 chr1 163754532 163754817 -118438847 - AluJo SINE Alu -24 288 7 1597 174 14 48 chr1 163754956 163755270 -118438394 - AluJo SINE Alu 0 304 1 26 0 0 0 chr1 163755277 163755303 -118438361 + AT_rich Low_complexity Low_complexity 1 26 0 953 198 0 0 chr1 163756300 163756457 -118437207 - FRAM SINE Alu -9 157 1 207 182 0 0 chr1 163756850 163756883 -118436781 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1501 172 7 28 chr1 163757222 163757507 -118436157 + AluJb SINE Alu 21 299 -13 662 215 28 51 chr1 163757507 163757684 -118435980 + AluJb SINE Alu 137 309 -3 1986 112 0 0 chr1 163758029 163758289 -118435375 + AluSx SINE Alu 41 300 -12 844 192 6 33 chr1 163758504 163758669 -118434995 + FRAM SINE Alu 1 161 -151 1721 186 33 10 chr1 163758669 163758785 -118434879 + AluJo SINE Alu 3 115 -197 197 32 0 32 chr1 163758785 163758816 -118434848 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1721 186 33 10 chr1 163758816 163759000 -118434664 + AluJo SINE Alu 115 310 -2 844 192 6 33 chr1 163759000 163759016 -118434648 + FRAM SINE Alu 161 176 0 2195 116 13 0 chr1 163759168 163759469 -118434195 + AluSx SINE Alu 3 307 -5 515 175 22 153 chr1 163759790 163760018 -118433646 + MER4B-int LTR ERV1 5722 5919 -839 213 121 0 0 chr1 163760058 163760091 -118433573 + (TTTTC)n Simple_repeat Simple_repeat 5 37 0 1553 227 49 10 chr1 163760270 163760709 -118432955 + LTR56 LTR ERV1 12 437 0 297 202 60 75 chr1 163760709 163760853 -118432811 + L1ME4a LINE L1 5746 5885 -279 3921 141 15 62 chr1 163760853 163761578 -118432086 + LTR8 LTR ERV1 1 691 0 297 202 60 75 chr1 163761578 163761643 -118432021 + L1ME4a LINE L1 5885 5949 -215 364 235 52 26 chr1 163762123 163762238 -118431426 + Charlie4 DNA MER1_type 1839 1956 -5 2249 92 10 0 chr1 163762253 163762547 -118431117 + AluSx SINE Alu 8 304 -8 1502 12 0 0 chr1 163762957 163763121 -118430543 + U1 snRNA snRNA 1 164 -1 669 250 58 38 chr1 163763713 163763953 -118429711 + L1ME2 LINE L1 5801 6045 -119 523 282 86 47 chr1 163764034 163764289 -118429375 + HAL1b LINE L1 935 1199 -149 359 264 45 18 chr1 163764499 163764609 -118429055 + L1ME4a LINE L1 5966 6078 -43 1942 223 39 104 chr1 163764920 163765643 -118428021 - LTR8 LTR ERV1 0 691 16 573 276 84 44 chr1 163765699 163765924 -118427740 + MIR SINE MIR 2 235 -27 2345 85 7 0 chr1 163766320 163766614 -118427050 + AluSx SINE Alu 3 298 -14 932 261 39 75 chr1 163766646 163767176 -118426488 - MER39 LTR ERV1 0 707 1 1015 156 6 34 chr1 163767249 163767428 -118426236 + AluSx SINE Alu 1 174 -138 565 75 0 0 chr1 163767504 163767584 -118426080 - HY3 scRNA scRNA -1 100 21 2517 200 100 18 chr1 163769206 163769817 -118423847 + MER67B LTR ERV1 1 661 0 707 233 111 116 chr1 163770159 163770759 -118422905 + L1ME2 LINE L1 5536 6134 -36 23 33 0 0 chr1 163770759 163770789 -118422875 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr1 163771603 163771627 -118422037 + (TA)n Simple_repeat Simple_repeat 1 24 0 1079 192 10 5 chr1 163772386 163772589 -118421075 + AluJo SINE Alu 85 288 -24 1596 215 31 44 chr1 163772904 163773355 -118420309 - MER65A LTR ERV1 0 445 1 204 111 0 0 chr1 163774031 163774067 -118419597 + (GA)n Simple_repeat Simple_repeat 1 36 0 1158 144 17 11 chr1 163774694 163774875 -118418789 + AluJb SINE Alu 83 264 -48 341 190 0 0 chr1 163775623 163775681 -118417983 - tRNA-Asn-AAC tRNA tRNA -15 62 5 1367 148 9 0 chr1 163776304 163776527 -118417137 - AluJb SINE Alu -10 302 78 1580 56 51 39 chr1 163776540 163776727 -118416937 - AluY SINE Alu 0 311 119 531 45 0 0 chr1 163776727 163776793 -118416871 + (TTTC)n Simple_repeat Simple_repeat 2 67 0 1580 56 51 39 chr1 163776793 163776839 -118416825 - AluY SINE Alu -192 119 75 221 146 21 0 chr1 163777815 163777863 -118415801 + CT-rich Low_complexity Low_complexity 1 49 0 279 0 0 0 chr1 163779374 163779405 -118414259 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 163 38 12 chr1 163780496 163780576 -118413088 + GA-rich Low_complexity Low_complexity 2 83 0 351 0 0 0 chr1 163780982 163781021 -118412643 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 221 146 21 0 chr1 163782526 163782574 -118411090 + CT-rich Low_complexity Low_complexity 1 49 0 333 0 0 0 chr1 163784068 163784089 -118409575 + (TG)n Simple_repeat Simple_repeat 1 58 0 333 0 0 0 chr1 163784089 163784126 -118409538 + (TG)n Simple_repeat Simple_repeat 2 38 0 266 163 38 12 chr1 163785216 163785296 -118408368 + GA-rich Low_complexity Low_complexity 2 83 0 357 43 0 0 chr1 163785702 163785749 -118407915 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 221 146 21 0 chr1 163787248 163787296 -118406368 + CT-rich Low_complexity Low_complexity 1 49 0 315 0 0 0 chr1 163788807 163788842 -118404822 + (TG)n Simple_repeat Simple_repeat 2 36 0 269 154 39 13 chr1 163789934 163790012 -118403652 + GA-rich Low_complexity Low_complexity 2 81 0 207 0 0 0 chr1 163790420 163790443 -118403221 + (TCTCTG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr1 163791959 163791982 -118401682 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 441 0 0 0 chr1 163791981 163792030 -118401634 + (TG)n Simple_repeat Simple_repeat 2 50 0 287 150 38 12 chr1 163793122 163793202 -118400462 + GA-rich Low_complexity Low_complexity 2 83 0 249 151 0 0 chr1 163793599 163793652 -118400012 + CT-rich Low_complexity Low_complexity 1 53 0 554 317 46 41 chr1 163794996 163795435 -118398229 - L1MC4 LINE L1 -413 7629 7189 291 85 0 0 chr1 163795801 163795848 -118397816 + (TG)n Simple_repeat Simple_repeat 1 47 0 446 20 0 0 chr1 163796155 163796205 -118397459 + MER51D LTR ERV1 606 655 -2 2709 42 0 0 chr1 163796220 163796528 -118397136 + AluY SINE Alu 1 308 -3 2010 169 0 15 chr1 163796535 163796878 -118396786 + MER72 LTR ERV1 164 501 -221 1050 150 0 59 chr1 163797112 163797299 -118396365 - AluSg/x SINE Alu -3 307 132 583 39 0 26 chr1 163797759 163797836 -118395828 - tRNA-Asn-AAC tRNA tRNA -2 75 1 687 295 90 27 chr1 163798307 163798684 -118394980 + L1ME3 LINE L1 5484 5891 -271 2318 53 3 75 chr1 163798684 163799002 -118394662 + AluY SINE Alu 1 295 -16 687 295 90 27 chr1 163799002 163799037 -118394627 + L1ME3 LINE L1 5891 5922 -240 1698 178 10 0 chr1 163800367 163800671 -118392993 + AluSg SINE Alu 1 307 -3 400 279 7 14 chr1 163800845 163800992 -118392672 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 163801999 163802094 -118391570 - L1MB5 LINE L1 -9 6165 6071 1837 149 0 0 chr1 163805191 163805459 -118388205 - AluSx SINE Alu -7 305 38 587 121 19 6 chr1 163806160 163806271 -118387393 - L1P LINE L1 -2901 3245 3132 10042 77 8 2 chr1 163806618 163808009 -118385655 - L1P LINE L1 -2920 3226 1828 4341 38 0 0 chr1 163808005 163808504 -118385160 + L1PA4 LINE L1 5494 5992 -163 * 550 209 23 90 chr1 163808626 163808803 -118384861 + AluJb SINE Alu 128 292 -20 5131 126 37 10 chr1 163808803 163809622 -118384042 + L1PA16 LINE L1 5323 6163 -3 2101 256 45 8 chr1 163809753 163810268 -118383396 - MLT1E LTR MaLR -59 534 1 2044 202 56 33 chr1 163810531 163811045 -118382619 - L1ME1 LINE L1 -41 6125 5600 1824 151 60 23 chr1 163811045 163811394 -118382270 - MER46B DNA MER2_type -1 235 -1 235 208 75 0 chr1 163811398 163811451 -118382213 - L1ME1 LINE L1 -559 5611 5555 2692 264 47 47 chr1 163811452 163812525 -118381139 - L2 LINE L2 -277 3036 1921 2534 79 0 0 chr1 163812528 163812832 -118380832 + AluSx SINE Alu 2 305 -7 819 123 0 0 chr1 163812838 163812968 -118380696 + L1P LINE L1 2088 2217 -3929 15377 104 1 0 chr1 163812977 163815060 -118378604 + L1P LINE L1 11 2094 -4052 1463 156 0 4 chr1 163815060 163815291 -118378373 + AluSg SINE Alu 1 230 -80 477 149 18 60 chr1 163815520 163815688 -118377976 + CT-rich Low_complexity Low_complexity 2 162 0 2460 80 0 13 chr1 163816443 163816757 -118376907 - AluY SINE Alu -1 310 1 1105 0 0 0 chr1 163816949 163817072 -118376592 + L1PA4 LINE L1 6032 6154 -1 25 0 0 0 chr1 163817712 163817737 -118375927 + AT_rich Low_complexity Low_complexity 1 25 0 2280 46 85 7 chr1 163817827 163818108 -118375556 + AluY SINE Alu 1 303 -8 263 385 68 50 chr1 163818908 163819230 -118374434 - L2 LINE L2 -22 3250 2923 299 229 74 74 chr1 163821013 163821135 -118372529 + L2 LINE L2 3183 3304 -9 2007 170 82 18 chr1 163821234 163821634 -118372030 - MSTB LTR MaLR 0 426 1 301 302 12 15 chr1 163821643 163821735 -118371929 - MIR SINE MIR -115 93 4 891 334 148 12 chr1 163822481 163823038 -118370626 + L2 LINE L2 2692 3305 -8 210 118 0 0 chr1 163823155 163823189 -118370475 + (T)n Simple_repeat Simple_repeat 1 34 0 2731 176 111 33 chr1 163823609 163824082 -118369582 - L1MA7 LINE L1 -10 6281 5731 2072 93 52 0 chr1 163824082 163824371 -118369293 - AluSg SINE Alu -6 304 1 2731 176 111 33 chr1 163824371 163824618 -118369046 - L1MA7 LINE L1 -560 5731 5505 856 212 41 6 chr1 163824723 163824893 -118368771 + MER5A DNA MER1_type 10 185 -4 255 242 186 40 chr1 163825255 163825379 -118368285 - MIR3 SINE MIR -32 176 35 28 29 0 0 chr1 163825461 163825496 -118368168 + AT_rich Low_complexity Low_complexity 1 35 0 279 248 67 38 chr1 163825795 163825900 -118367764 + MIR SINE MIR 47 154 -108 670 241 147 22 chr1 163825940 163826172 -118367492 + MIR SINE MIR 2 262 0 2290 121 0 0 chr1 163827858 163828165 -118365499 + AluSg SINE Alu 1 307 -3 4711 52 0 5 chr1 163829448 163830042 -118363622 + L1PA8 LINE L1 5576 6166 -6 1756 94 0 0 chr1 163830330 163830554 -118363110 + AluY SINE Alu 79 302 -9 400 302 111 54 chr1 163831737 163832027 -118361637 - L1MEc LINE L1 -5333 808 466 435 303 113 56 chr1 163832220 163832652 -118361012 - L1MEc LINE L1 -5596 474 18 22 56 0 0 chr1 163832846 163832882 -118360782 + AT_rich Low_complexity Low_complexity 1 36 0 947 189 59 0 chr1 163833767 163833989 -118359675 + MER96B DNA MER1_type? 1 235 -182 2481 63 0 0 chr1 163834045 163834348 -118359316 - AluY SINE Alu -8 303 1 190 257 162 14 chr1 163834450 163834524 -118359140 - MIR SINE MIR -26 236 152 555 142 4 20 chr1 163835365 163835601 -118358063 - AluJb SINE Alu -39 273 1 198 281 18 18 chr1 163836854 163836911 -118356753 - L2 LINE L2 -13 3300 3244 211 299 37 47 chr1 163837286 163837393 -118356271 - L3 LINE CR1 -358 1219 1114 343 395 12 6 chr1 163839121 163839293 -118354371 - MIR3 SINE MIR -2 206 34 270 305 0 0 chr1 163839999 163840058 -118353606 - L2 LINE L2 -24 3289 3231 397 343 51 23 chr1 163840129 163840345 -118353319 - L2 LINE L2 -213 3059 2838 180 111 0 0 chr1 163841315 163841342 -118352322 + (TG)n Simple_repeat Simple_repeat 1 27 0 225 0 0 0 chr1 163842484 163842509 -118351155 + (A)n Simple_repeat Simple_repeat 1 25 0 673 140 15 73 chr1 163843082 163843218 -118350446 - FLAM_C SINE Alu -4 129 2 203 245 61 0 chr1 163844538 163844587 -118349077 - L2 LINE L2 -575 2739 2688 189 247 202 11 chr1 163844605 163844694 -118348970 + L3 LINE CR1 438 543 -1034 181 300 170 0 chr1 163844819 163844919 -118348745 + MIR3 SINE MIR 89 205 -3 478 269 24 164 chr1 163844929 163845385 -118348279 + L3 LINE CR1 754 1144 -433 605 290 100 17 chr1 163845385 163845466 -118348198 + MIR SINE MIR 2 75 -187 2469 67 0 0 chr1 163845466 163845764 -118347900 - AluY SINE Alu -13 298 1 605 290 100 17 chr1 163845764 163845913 -118347751 + MIR SINE MIR 75 251 -11 456 321 86 34 chr1 163845993 163846216 -118347448 + L3 LINE CR1 1131 1372 -205 2932 144 39 0 chr1 163846216 163846731 -118346933 - L1MB7 LINE L1 -19 6165 5631 456 321 86 34 chr1 163846731 163846775 -118346889 + L3 LINE CR1 1372 1412 -165 835 221 179 0 chr1 163846840 163847030 -118346634 - MIR SINE MIR -21 241 18 308 254 14 0 chr1 163847100 163847171 -118346493 + L3 LINE CR1 1452 1523 -54 203 306 136 66 chr1 163847368 163848076 -118345588 - L2 LINE L2 -878 2436 1680 1066 254 133 42 chr1 163848221 163848729 -118344935 + L2 LINE L2 2757 3312 -1 1506 201 59 6 chr1 163848850 163849174 -118344490 - MER58B DNA MER1_type 0 341 1 2208 102 3 10 chr1 163849791 163850085 -118343579 - AluSx SINE Alu -20 292 1 368 292 159 19 chr1 163850118 163850301 -118343363 - MIR SINE MIR -56 206 4 439 181 118 24 chr1 163850887 163851014 -118342650 + MLT1H1 LTR MaLR 404 555 0 688 217 161 46 chr1 163851080 163851128 -118342536 - MIR SINE MIR -17 245 204 1958 124 60 0 chr1 163851128 163851410 -118342254 - AluSg SINE Alu -11 299 1 688 217 161 46 chr1 163851410 163851578 -118342086 - MIR SINE MIR -58 204 4 1531 176 3 13 chr1 163851887 163852188 -118341476 + AluSx SINE Alu 2 299 -13 987 260 70 50 chr1 163852188 163852641 -118341023 + L1M4 LINE L1 3103 3571 -2575 2264 96 0 0 chr1 163852641 163852944 -118340720 - AluY SINE Alu -8 303 1 987 260 70 50 chr1 163852944 163853048 -118340616 + L1M4 LINE L1 3571 3671 -2475 239 301 143 23 chr1 163853472 163853605 -118340059 - L2 LINE L2 -1415 1899 1751 689 257 65 48 chr1 163854729 163855021 -118338643 + L2 LINE L2 3013 3309 -4 336 304 26 0 chr1 163855137 163855252 -118338412 - MIR SINE MIR -82 180 63 2044 106 31 14 chr1 163855847 163856139 -118337525 + AluSx SINE Alu 1 297 -15 334 273 0 0 chr1 163856435 163856501 -118337163 - L2 LINE L2 0 3272 3207 249 273 0 0 chr1 163857414 163857469 -118336195 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2142 135 0 0 chr1 163857724 163858028 -118335636 - AluSx SINE Alu -6 306 3 807 237 118 28 chr1 163858177 163858388 -118335276 - MIR SINE MIR -10 252 23 2186 72 0 7 chr1 163859312 163859590 -118334074 + AluSc SINE Alu 28 303 -6 190 273 78 39 chr1 163860244 163860321 -118333343 - L2 LINE L2 -1538 1776 1697 432 263 113 12 chr1 163861238 163861398 -118332266 - MIR3 SINE MIR -3 205 30 1411 124 0 15 chr1 163861445 163861646 -118332018 - AluSg/x SINE Alu -29 281 84 224 396 44 0 chr1 163861678 163861769 -118331895 - L2 LINE L2 -50 3222 3128 226 352 19 19 chr1 163861789 163861894 -118331770 + L2 LINE L2 2669 2773 -541 282 354 58 50 chr1 163861992 163862228 -118331436 + L2 LINE L2 2894 3136 -177 2546 40 0 10 chr1 163862228 163862392 -118331272 - AluY SINE Alu -15 296 135 2606 32 7 3 chr1 163862392 163862702 -118330962 - AluY SINE Alu 0 311 1 2546 40 0 10 chr1 163862702 163862836 -118330828 - AluY SINE Alu -176 135 1 282 354 58 50 chr1 163862836 163862978 -118330686 + L2 LINE L2 3136 3275 -38 398 339 209 11 chr1 163863542 163863991 -118329673 - L2 LINE L2 -698 2616 2079 6439 85 19 0 chr1 163864597 163865666 -118327998 + L1PA11 LINE L1 5089 6174 0 262 149 0 0 chr1 163865788 163865835 -118327829 + MER5C DNA MER1_type 76 122 -202 195 78 255 39 chr1 163865982 163866033 -118327631 + MER5C DNA MER1_type 263 324 0 304 267 12 0 chr1 163866249 163866335 -118327329 + L2 LINE L2 3227 3313 0 376 311 113 81 chr1 163866507 163867080 -118326584 + L2 LINE L2 2392 3003 -269 1229 212 212 21 chr1 163867080 163867504 -118326160 - MLT1D LTR MaLR 0 505 1 376 311 113 81 chr1 163867504 163867751 -118325913 + L2 LINE L2 3003 3241 -31 210 209 23 0 chr1 163868226 163868269 -118325395 + MIR SINE MIR 209 252 -10 183 100 0 0 chr1 163868612 163868642 -118325022 + (TTAGG)n Simple_repeat Simple_repeat 1 30 0 497 203 80 104 chr1 163869294 163869405 -118324259 + MER106B DNA MER1_type 30 142 -917 2964 159 11 25 chr1 163869405 163869932 -118323732 - MLT2B1 LTR ERVL 0 520 1 497 203 80 104 chr1 163869932 163870032 -118323632 + MER106B DNA MER1_type 142 1059 0 225 226 0 19 chr1 163870166 163870219 -118323445 - MIR SINE MIR -19 243 192 2330 77 0 0 chr1 163870765 163871073 -118322591 + AluY SINE Alu 1 308 0 232 328 0 0 chr1 163871873 163871934 -118321730 + MIR SINE MIR 33 93 -115 605 290 95 30 chr1 163871959 163872190 -118321474 + MIR SINE MIR 5 250 -12 2361 139 31 35 chr1 163873149 163873223 -118320441 - MSTB LTR MaLR -1 425 352 1825 179 0 0 chr1 163873223 163873530 -118320134 + AluSx SINE Alu 1 307 -5 2361 139 31 35 chr1 163873530 163873880 -118319784 - MSTB LTR MaLR -74 352 3 430 344 76 29 chr1 163873945 163874288 -118319376 - L2 LINE L2 -342 2972 2614 398 316 30 15 chr1 163874291 163874424 -118319240 - L2 LINE L2 -1334 1980 1846 822 232 39 0 chr1 163874431 163874612 -118319052 + MER5A DNA MER1_type 1 188 -1 325 332 136 43 chr1 163874778 163875013 -118318651 + L2 LINE L2 2999 3255 -17 441 0 0 0 chr1 163875124 163875173 -118318491 + (TG)n Simple_repeat Simple_repeat 2 50 0 200 280 67 63 chr1 163875190 163875429 -118318235 - L2 LINE L2 -1648 1666 1427 2256 92 0 0 chr1 163875945 163876251 -118317413 + AluSx SINE Alu 1 306 0 509 281 101 17 chr1 163876798 163876976 -118316688 + MIR SINE MIR 40 232 -30 219 254 15 15 chr1 163877291 163877358 -118316306 + CT-rich Low_complexity Low_complexity 1 67 0 1693 157 48 7 chr1 163877418 163877736 -118315928 - AluJo SINE Alu 0 312 7 274 283 67 25 chr1 163878489 163878609 -118315055 + MER91A DNA MER1_type 1 125 -71 662 200 131 6 chr1 163878610 163878785 -118314879 - MLT1C LTR MaLR -1 466 270 2037 152 0 10 chr1 163879679 163879982 -118313682 - AluJb SINE Alu -12 300 1 1827 171 7 0 chr1 163880584 163880877 -118312787 - AluJo SINE Alu -13 299 5 1877 113 74 47 chr1 163880944 163881308 -118312356 - THE1C LTR MaLR 0 375 2 206 349 28 57 chr1 163881501 163881607 -118312057 - L2 LINE L2 -20 3252 3150 377 344 56 26 chr1 163881683 163881878 -118311786 + L2 LINE L2 3072 3272 0 622 193 56 43 chr1 163882059 163882220 -118311444 + MIR SINE MIR 50 212 -50 2365 93 3 3 chr1 163882927 163883229 -118310435 - AluSq SINE Alu -11 302 1 202 296 108 65 chr1 163884175 163884526 -118309138 + L2 LINE L2 2488 2853 -461 459 269 67 12 chr1 163884809 163885011 -118308653 - L1ME3A LINE L1 -305 5865 5691 197 337 11 11 chr1 163885023 163885112 -118308552 + L2 LINE L2 2976 3064 -208 194 294 24 47 chr1 163885143 163885228 -118308436 + L2 LINE L2 3189 3271 -1 23 0 0 0 chr1 163885550 163885573 -118308091 + GC_rich Low_complexity Low_complexity 1 23 0 180 97 0 0 chr1 163885964 163885995 -118307669 + (CGG)n Simple_repeat Simple_repeat 2 32 0 256 305 108 30 chr1 163887769 163887936 -118305728 + MIR SINE MIR 41 220 -42 235 350 126 0 chr1 163889029 163889132 -118304532 - MER5B DNA MER1_type -62 116 1 330 261 63 36 chr1 163889737 163889848 -118303816 + MIR SINE MIR 20 133 -75 217 316 89 0 chr1 163889853 163889932 -118303732 - MIR3 SINE MIR -109 99 14 249 268 0 18 chr1 163890071 163890127 -118303537 + L2 LINE L2 3247 3301 -12 684 289 40 27 chr1 163891095 163891320 -118302344 - L3 LINE CR1 -23 1554 1327 294 326 10 0 chr1 163891600 163891698 -118301966 - MER5B DNA MER1_type -79 99 1 225 253 50 61 chr1 163892765 163892864 -118300800 - L2 LINE L2 -48 3265 3168 23 0 0 0 chr1 163894414 163894437 -118299227 + AT_rich Low_complexity Low_complexity 1 23 0 236 274 12 0 chr1 163894955 163895039 -118298625 + (TA)n Simple_repeat Simple_repeat 1 85 0 418 278 114 18 chr1 163895042 163895269 -118298395 - L1ME3A LINE L1 -2306 5502 5254 183 256 24 85 chr1 163896823 163896905 -118296759 - MIR SINE MIR -79 129 53 2366 74 7 3 chr1 163896916 163897215 -118296449 - AluSp SINE Alu -13 300 1 413 353 68 18 chr1 163897267 163897488 -118296176 - MIR SINE MIR -26 236 5 364 319 188 6 chr1 163897480 163897640 -118296024 - MIR SINE MIR -52 210 22 * 595 309 25 0 chr1 163898052 163898253 -118295411 + MIR SINE MIR 57 262 0 749 184 0 43 chr1 163898485 163898648 -118295016 + Tigger1 DNA MER2_type 2 157 -2261 * 1171 172 9 0 chr1 163898637 163898852 -118294812 + Tigger1 DNA MER2_type 2202 2418 0 439 224 126 42 chr1 163899218 163899361 -118294303 - MIR3 SINE MIR -47 161 7 217 214 0 24 chr1 163900136 163900178 -118293486 - L2 LINE L2 -74 3239 3199 202 285 33 55 chr1 163900292 163900396 -118293268 - MIR SINE MIR -92 116 15 488 288 127 15 chr1 163901414 163901619 -118292045 + MIR SINE MIR 7 234 -28 233 185 62 31 chr1 163901619 163901684 -118291980 - MER69 DNA AcHobo -110 67 1 24 32 0 0 chr1 163902465 163902496 -118291168 + AT_rich Low_complexity Low_complexity 1 31 0 354 336 17 8 chr1 163902578 163902697 -118290967 - MIR SINE MIR -67 141 31 22 35 0 0 chr1 163903991 163904020 -118289644 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 163904085 163904115 -118289549 + AT_rich Low_complexity Low_complexity 1 30 0 294 29 0 0 chr1 163904148 163904183 -118289481 + (TG)n Simple_repeat Simple_repeat 2 36 0 854 218 39 0 chr1 163905934 163906113 -118287551 - MER5A DNA MER1_type -3 186 1 343 293 75 9 chr1 163906222 163906328 -118287336 - L2 LINE L2 -1 3312 3200 478 254 125 36 chr1 163906493 163906664 -118287000 - MIR SINE MIR -14 248 51 2140 144 0 0 chr1 163906664 163906976 -118286688 + AluJo SINE Alu 1 312 0 478 254 125 36 chr1 163906976 163907028 -118286636 - MIR SINE MIR -211 51 5 378 294 94 8 chr1 163907031 163907266 -118286398 - MER112 DNA MER1_type 0 256 2 2180 117 0 10 chr1 163907355 163907655 -118286009 + AluSg SINE Alu 1 297 -13 2072 130 0 10 chr1 163907724 163908025 -118285639 - AluSx SINE Alu -14 298 1 185 191 119 0 chr1 163908314 163908356 -118285308 - MIR SINE MIR -33 229 183 247 342 18 26 chr1 163909000 163909114 -118284550 - MIR SINE MIR -77 131 19 353 223 74 47 chr1 163909433 163909581 -118284083 - Charlie7 DNA MER1_type -2460 152 1 189 0 0 0 chr1 163909938 163909959 -118283705 + (T)n Simple_repeat Simple_repeat 1 21 0 26 88 0 0 chr1 163910712 163910780 -118282884 + AT_rich Low_complexity Low_complexity 1 68 0 464 267 46 23 chr1 163911934 163912121 -118281543 + MIR SINE MIR 5 192 -65 461 178 12 49 chr1 163913425 163913588 -118280076 + CT-rich Low_complexity Low_complexity 2 158 0 2391 76 0 13 chr1 163914346 163914650 -118279014 - AluY SINE Alu -11 300 1 1073 0 0 0 chr1 163914842 163914964 -118278700 + L1PA4 LINE L1 6032 6153 -2 25 0 0 0 chr1 163915604 163915629 -118278035 + AT_rich Low_complexity Low_complexity 1 25 0 2214 47 87 7 chr1 163915719 163915996 -118277668 + AluY SINE Alu 1 299 -12 392 382 68 50 chr1 163916796 163917118 -118276546 - L2 LINE L2 -22 3250 2923 321 205 74 74 chr1 163918898 163919020 -118274644 + L2 LINE L2 3183 3304 -9 2042 170 83 15 chr1 163919119 163919518 -118274146 - MSTB LTR MaLR 0 426 1 301 302 12 15 chr1 163919527 163919619 -118274045 - MIR SINE MIR -115 93 4 891 335 123 15 chr1 163920365 163920922 -118272742 + L2 LINE L2 2692 3305 -8 2687 181 109 37 chr1 163921481 163921957 -118271707 - L1MA7 LINE L1 -10 6281 5734 2232 84 44 0 chr1 163921957 163922254 -118271410 - AluSg SINE Alu 0 310 1 2687 181 109 37 chr1 163922254 163922502 -118271162 - L1MA7 LINE L1 -557 5734 5505 873 206 41 6 chr1 163922607 163922777 -118270887 + MER5A DNA MER1_type 10 185 -4 255 242 186 40 chr1 163923139 163923263 -118270401 - MIR3 SINE MIR -32 176 35 28 29 0 0 chr1 163923345 163923380 -118270284 + AT_rich Low_complexity Low_complexity 1 35 0 260 257 67 38 chr1 163923679 163923784 -118269880 + MIR SINE MIR 47 154 -108 696 237 147 22 chr1 163923824 163924056 -118269608 + MIR SINE MIR 2 262 0 2290 121 0 0 chr1 163925743 163926050 -118267614 + AluSg SINE Alu 1 307 -3 4699 59 0 2 chr1 163927328 163927923 -118265741 + L1PA8 LINE L1 5576 6169 -3 1787 85 0 0 chr1 163928210 163928434 -118265230 + AluY SINE Alu 79 302 -9 410 306 50 53 chr1 163929609 163929899 -118263765 - L1MEc LINE L1 -5333 808 466 444 300 113 58 chr1 163930092 163930525 -118263139 - L1MEc LINE L1 -5596 474 18 22 56 0 0 chr1 163930719 163930755 -118262909 + AT_rich Low_complexity Low_complexity 1 36 0 947 189 59 0 chr1 163931640 163931862 -118261802 + MER96B DNA MER1_type? 1 235 -182 2462 69 0 0 chr1 163931918 163932221 -118261443 - AluY SINE Alu -8 303 1 200 243 162 14 chr1 163932323 163932397 -118261267 - MIR SINE MIR -26 236 152 555 133 4 20 chr1 163933238 163933474 -118260190 - AluJb SINE Alu -39 273 1 198 281 18 18 chr1 163934724 163934781 -118258883 - L2 LINE L2 -13 3300 3244 223 290 37 47 chr1 163935156 163935263 -118258401 - L3 LINE CR1 -358 1219 1114 344 395 12 6 chr1 163936991 163937163 -118256501 - MIR3 SINE MIR -2 206 34 260 322 0 0 chr1 163937868 163937927 -118255737 - L2 LINE L2 -24 3289 3231 321 356 62 29 chr1 163937994 163938202 -118255462 - L2 LINE L2 -248 3065 2851 180 111 0 0 chr1 163939182 163939209 -118254455 + (TG)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr1 163940316 163940336 -118253328 + (TTG)n Simple_repeat Simple_repeat 2 21 0 216 0 0 0 chr1 163940361 163940385 -118253279 + (A)n Simple_repeat Simple_repeat 1 24 0 694 126 15 74 chr1 163940958 163941093 -118252571 - FLAM_C SINE Alu -5 128 2 203 245 61 0 chr1 163942412 163942461 -118251203 - L2 LINE L2 -575 2739 2688 198 244 200 11 chr1 163942479 163942569 -118251095 + L3 LINE CR1 438 544 -1033 187 300 170 0 chr1 163942693 163942793 -118250871 + MIR3 SINE MIR 89 205 -3 476 269 24 164 chr1 163942803 163943259 -118250405 + L3 LINE CR1 754 1144 -433 636 293 95 17 chr1 163943259 163943341 -118250323 + MIR SINE MIR 2 76 -186 2423 71 0 0 chr1 163943341 163943636 -118250028 - AluY SINE Alu -16 295 1 636 293 95 17 chr1 163943636 163943785 -118249879 + MIR SINE MIR 76 251 -11 431 333 95 9 chr1 163943865 163944075 -118249589 + L3 LINE CR1 1131 1358 -219 2813 148 39 0 chr1 163944089 163944603 -118249061 - L1MB7 LINE L1 -20 6164 5631 805 232 179 0 chr1 163944713 163944903 -118248761 - MIR SINE MIR -21 241 18 308 254 14 0 chr1 163944973 163945044 -118248620 + L3 LINE CR1 1452 1523 -54 1066 254 133 42 chr1 163946094 163946602 -118247062 + L2 LINE L2 2757 3312 -1 1522 198 59 6 chr1 163946723 163947047 -118246617 - MER58B DNA MER1_type 0 341 1 2176 105 3 10 chr1 163947664 163947958 -118245706 - AluSx SINE Alu -20 292 1 354 300 159 19 chr1 163947991 163948174 -118245490 - MIR SINE MIR -56 206 4 21 36 0 0 chr1 163949043 163949071 -118244593 + AT_rich Low_complexity Low_complexity 1 28 0 2006 127 3 52 chr1 163950276 163950584 -118243080 + AluJo SINE Alu 1 293 -19 286 389 92 22 chr1 163951133 163951537 -118242127 + L2 LINE L2 2544 2975 -339 277 98 78 0 chr1 163951889 163951940 -118241724 - MLT2A1 LTR ERVL 0 444 390 2867 78 18 10 chr1 163952001 163952398 -118241266 - MLT2A1 LTR ERVL -44 400 1 10399 73 28 9 chr1 163952398 163953840 -118239824 - HERVL-A1 LTR ERVL 0 5654 4185 2667 71 14 0 chr1 163954107 163954457 -118239207 - THE1A LTR MaLR 0 355 1 2398 91 7 0 chr1 163954790 163955099 -118238565 - AluY SINE Alu 0 311 1 992 103 13 0 chr1 163955299 163955454 -118238210 + (TTTC)n Simple_repeat Simple_repeat 3 159 0 1779 147 26 0 chr1 163955454 163955719 -118237945 - AluSx SINE Alu -40 272 1 4494 29 0 0 chr1 163956100 163956621 -118237043 + L1PA5 LINE L1 5626 6146 -8 2357 98 0 0 chr1 163957323 163957618 -118236046 - AluSg SINE Alu -15 295 1 337 267 23 12 chr1 163959457 163959543 -118234121 - L2 LINE L2 0 3313 3227 558 303 91 23 chr1 163960339 163960560 -118233104 - MIR SINE MIR -6 256 21 501 17 0 0 chr1 163960735 163960793 -118232871 + (TG)n Simple_repeat Simple_repeat 1 58 0 207 266 16 16 chr1 163961206 163961270 -118232394 - MIR SINE MIR -109 153 90 465 224 62 122 chr1 163961282 163961635 -118232029 + L2 LINE L2 2982 3313 0 230 264 11 46 chr1 163963035 163963122 -118230542 + L2 LINE L2 3229 3312 -1 2316 115 0 0 chr1 163963449 163963761 -118229903 - AluSx SINE Alu 0 312 1 3195 180 35 16 chr1 163964633 163965652 -118228012 - L1MB7 LINE L1 -239 5945 4903 1021 211 0 16 chr1 163965640 163965886 -118227778 + L1MB7 LINE L1 5917 6158 -26 * 21 0 0 0 chr1 163965952 163965973 -118227691 + AT_rich Low_complexity Low_complexity 1 21 0 2068 154 10 0 chr1 163965982 163966287 -118227377 + AluJo SINE Alu 1 308 -4 315 253 44 0 chr1 163966484 163966573 -118227091 + MIR SINE MIR 47 143 -67 251 318 91 8 chr1 163966610 163966742 -118226922 + MER5A DNA MER1_type 19 161 -28 181 315 65 56 chr1 163966806 163966914 -118226750 - L2 LINE L2 -3196 118 10 216 358 73 0 chr1 163968089 163968212 -118225452 + MIR SINE MIR 118 249 -13 1705 172 10 0 chr1 163970748 163971044 -118222620 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr1 163971046 163971074 -118222590 + AT_rich Low_complexity Low_complexity 1 28 0 448 279 7 14 chr1 163971221 163971368 -118222296 + MIR SINE MIR 96 241 -21 347 200 42 42 chr1 163972371 163972466 -118221198 - L1MB5 LINE L1 -9 6165 6071 1047 211 5 5 chr1 163975100 163975304 -118218360 + AluJb SINE Alu 1 204 -108 2472 67 0 32 chr1 163975387 163975703 -118217961 + AluY SINE Alu 1 306 -5 1956 138 6 6 chr1 163975713 163976025 -118217639 + AluSx SINE Alu 1 312 0 1925 128 0 0 chr1 163977107 163977380 -118216284 + AluSg SINE Alu 1 273 -37 218 93 0 23 chr1 163977382 163977425 -118216239 + (TAA)n Simple_repeat Simple_repeat 1 42 0 440 265 7 14 chr1 163977578 163977725 -118215939 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 163978668 163978763 -118214901 - L1MB5 LINE L1 -9 6165 6071 1785 158 0 0 chr1 163981862 163982127 -118211537 - AluSx SINE Alu -10 302 38 16516 78 5 45 chr1 163982845 163984232 -118209432 - L1P LINE L1 -2920 3226 1978 5503 41 9 0 chr1 163984232 163984884 -118208780 + L1PA4 LINE L1 5494 6151 -4 16516 78 5 45 chr1 163984884 163985946 -118207718 - L1P LINE L1 -4168 1978 875 351 0 0 0 chr1 163988160 163988199 -118205465 + (TG)n Simple_repeat Simple_repeat 2 40 0 293 125 18 0 chr1 163989702 163989758 -118203906 + CT-rich Low_complexity Low_complexity 1 57 0 423 0 0 0 chr1 163991269 163991316 -118202348 + (TG)n Simple_repeat Simple_repeat 2 48 0 266 163 38 12 chr1 163992408 163992488 -118201176 + GA-rich Low_complexity Low_complexity 2 83 0 243 0 0 0 chr1 163992894 163992921 -118200743 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 221 146 21 0 chr1 163994428 163994476 -118199188 + CT-rich Low_complexity Low_complexity 1 49 0 279 0 0 0 chr1 163995970 163995991 -118197673 + (TG)n Simple_repeat Simple_repeat 1 52 0 279 0 0 0 chr1 163995991 163996022 -118197642 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 163 38 12 chr1 163997114 163997194 -118196470 + GA-rich Low_complexity Low_complexity 2 83 0 357 43 0 0 chr1 163997600 163997647 -118196017 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 221 146 21 0 chr1 163999144 163999192 -118194472 + CT-rich Low_complexity Low_complexity 1 49 0 245 175 38 12 chr1 164000264 164000344 -118193320 + GA-rich Low_complexity Low_complexity 2 83 0 279 122 0 0 chr1 164000745 164000794 -118192870 + (TC)n Simple_repeat Simple_repeat 1 49 0 233 352 11 34 chr1 164001951 164002127 -118191537 + L1MC4 LINE L1 7460 7631 -411 564 317 46 41 chr1 164002138 164002577 -118191087 - L1MC4 LINE L1 -413 7629 7189 306 67 0 0 chr1 164002936 164002981 -118190683 + (TG)n Simple_repeat Simple_repeat 1 45 0 4463 30 0 0 chr1 164003470 164004002 -118189662 + L1PA5 LINE L1 5628 6159 0 2419 96 0 0 chr1 164004686 164004987 -118188677 - AluSg SINE Alu -9 301 1 293 279 23 12 chr1 164006823 164006909 -118186755 - L2 LINE L2 0 3313 3227 452 308 91 23 chr1 164007706 164007927 -118185737 - MIR SINE MIR -6 256 21 234 0 0 0 chr1 164008102 164008128 -118185536 + (TG)n Simple_repeat Simple_repeat 1 26 0 182 266 16 16 chr1 164008558 164008622 -118185042 - MIR SINE MIR -109 153 90 386 209 29 137 chr1 164008681 164008987 -118184677 + L2 LINE L2 3041 3313 0 206 232 14 43 chr1 164010405 164010474 -118183190 + L2 LINE L2 3246 3312 -1 2319 116 0 0 chr1 164010805 164011116 -118182548 - AluSx SINE Alu -1 311 1 354 336 48 7 chr1 164011942 164012088 -118181576 + MIR3 SINE MIR 18 169 -39 4379 174 47 23 chr1 164012170 164013405 -118180259 - L1MB8 LINE L1 -6 6172 4903 1114 211 0 16 chr1 164013393 164013639 -118180025 + L1MB7 LINE L1 5917 6158 -26 * 216 0 0 0 chr1 164013708 164013732 -118179932 + (A)n Simple_repeat Simple_repeat 1 24 0 2038 152 10 0 chr1 164013741 164014044 -118179620 + AluJo SINE Alu 1 306 -6 289 253 44 0 chr1 164014241 164014330 -118179334 + MIR SINE MIR 47 143 -67 205 280 118 0 chr1 164014367 164014460 -118179204 + MER5A DNA MER1_type 19 122 -67 1744 173 10 0 chr1 164018505 164018812 -118174852 + AluSg SINE Alu 1 310 0 406 279 7 14 chr1 164018978 164019125 -118174539 + MIR SINE MIR 96 241 -21 384 179 42 42 chr1 164020124 164020219 -118173445 - L1MB5 LINE L1 -9 6165 6071 1830 155 0 0 chr1 164023324 164023595 -118170069 - AluSx SINE Alu -4 308 38 4714 95 9 0 chr1 164024313 164024995 -118168669 - L1P LINE L1 -2920 3226 2539 582 243 0 0 chr1 164025092 164025323 -118168341 + C-rich Low_complexity Low_complexity 1 231 0 757 125 9 0 chr1 164025423 164025535 -118168129 + L1PA6 LINE L1 6007 6119 -35 575 177 43 0 chr1 164025535 164025699 -118167965 + (TA)n Simple_repeat Simple_repeat 1 171 0 952 277 109 10 chr1 164026514 164026998 -118166666 - L1MB8 LINE L1 -1286 4860 4329 2273 248 98 19 chr1 164027016 164027452 -118166212 - L1ME1 LINE L1 -5 6161 5761 4906 81 12 20 chr1 164027452 164028116 -118165548 + PABL_A LTR ERV1 2 660 0 2273 248 98 19 chr1 164028116 164028483 -118165181 - L1ME1 LINE L1 -405 5761 5294 227 179 0 60 chr1 164028491 164028558 -118165106 + L1MC4 LINE L1 6647 6709 -1333 234 0 0 0 chr1 164028593 164028619 -118165045 + (CA)n Simple_repeat Simple_repeat 2 27 0 2452 267 26 39 chr1 164028652 164029092 -118164572 - L1ME1 LINE L1 -1282 4864 4419 2260 117 3 0 chr1 164029092 164029399 -118164265 - AluY SINE Alu -3 308 1 2452 267 26 39 chr1 164029399 164029974 -118163690 - L1ME1 LINE L1 -1727 4419 3863 21 0 0 0 chr1 164029982 164030003 -118163661 + AT_rich Low_complexity Low_complexity 1 21 0 507 48 0 0 chr1 164030006 164030069 -118163595 + AluY SINE Alu 2 64 -246 323 370 27 9 chr1 164030328 164030547 -118163117 - HERV16 LTR ERVL -3546 1450 1228 555 240 105 51 chr1 164030585 164030849 -118162815 - LTR33 LTR ERVL -248 275 29 222 229 66 16 chr1 164031450 164031511 -118162153 + MIR3 SINE MIR 138 201 -7 1681 183 58 11 chr1 164032473 164032834 -118160830 + L1ME2 LINE L1 5524 5901 -263 663 241 32 113 chr1 164032877 164033222 -118160442 + MLT1E2-int LTR MaLR 957 1273 -98 805 262 140 32 chr1 164033455 164033911 -118159753 + MLT1E2 LTR MaLR 111 654 0 6833 116 5 9 chr1 164034148 164035121 -118158543 - LTR5 LTR ERVK 0 969 1 1881 159 3 3 chr1 164035132 164035428 -118158236 + AluSq SINE Alu 9 304 -9 295 278 49 37 chr1 164035755 164035917 -118157747 + L1MB8 LINE L1 5990 6153 -25 930 278 86 16 chr1 164035925 164036310 -118157354 + L1MCa LINE L1 19 430 -5996 3331 203 43 12 chr1 164036310 164037808 -118155856 + L1MC2 LINE L1 4712 6339 -5 801 147 6 12 chr1 164038290 164038453 -118155211 + GA-rich Low_complexity Low_complexity 3 164 0 200 163 0 20 chr1 164038476 164038525 -118155139 + GA-rich Low_complexity Low_complexity 1 48 0 219 229 0 0 chr1 164039599 164039647 -118154017 - L2 LINE L2 -1 3312 3265 458 277 43 0 chr1 164040000 164040141 -118153523 - L2 LINE L2 -797 2517 2371 967 167 22 22 chr1 164040194 164040374 -118153290 + AluJo SINE Alu 84 263 -49 386 257 37 9 chr1 164040589 164040698 -118152966 - MLT1I LTR MaLR -17 392 281 403 297 36 0 chr1 164040779 164040890 -118152774 - L2 LINE L2 0 3272 3158 1740 184 10 0 chr1 164041025 164041319 -118152345 + AluJb SINE Alu 1 297 -15 357 148 0 0 chr1 164041761 164041815 -118151849 - FLAM SINE Alu -2 131 78 778 239 156 40 chr1 164041856 164041972 -118151692 + L1ME LINE L1 4843 4944 -1220 1917 154 3 3 chr1 164041972 164042271 -118151393 + AluJb SINE Alu 1 299 -13 778 239 156 40 chr1 164042271 164042425 -118151239 + L1ME LINE L1 4944 5079 -1085 1852 167 3 7 chr1 164042425 164042724 -118150940 + AluJb SINE Alu 1 298 -14 778 239 156 40 chr1 164042724 164043182 -118150482 + L1ME LINE L1 5079 5654 -510 288 138 239 110 chr1 164043183 164043244 -118150420 + L1ME3A LINE L1 6037 6089 -81 1953 158 3 0 chr1 164043244 164043548 -118150116 - AluJb SINE Alu -5 307 3 288 138 239 110 chr1 164043548 164043595 -118150069 + L1ME3A LINE L1 6089 6159 -11 1934 107 38 0 chr1 164045510 164045824 -118147840 - AluSx SINE Alu 0 334 11 1857 118 0 8 chr1 164046541 164046804 -118146860 + AluSx SINE Alu 1 261 -51 226 233 0 17 chr1 164046922 164046982 -118146682 + GA-rich Low_complexity Low_complexity 2 60 0 582 281 53 9 chr1 164046991 164047219 -118146445 + L1M4 LINE L1 3954 4191 -1955 * 8482 217 57 69 chr1 164047205 164049563 -118144101 + L1ME2 LINE L1 29 2357 -4183 192 40 0 0 chr1 164049563 164049588 -118144076 + (TA)n Simple_repeat Simple_repeat 2 26 0 8482 217 57 69 chr1 164049588 164050174 -118143490 + L1ME2 LINE L1 2357 2949 -3591 187 306 73 32 chr1 164051347 164051471 -118142193 - MIR3 SINE MIR -30 178 50 2436 104 0 0 chr1 164052025 164052333 -118141331 - AluSx SINE Alu -4 308 1 331 169 34 0 chr1 164052526 164052585 -118141079 + AluS SINE Alu 1 61 -242 1521 99 9 9 chr1 164052709 164052920 -118140744 - L1PA6 LINE L1 -35 6119 5909 890 271 107 37 chr1 164053072 164053879 -118139785 + L1ME2 LINE L1 5401 6285 -273 2343 50 3 75 chr1 164053879 164054197 -118139467 + AluY SINE Alu 1 295 -16 890 271 107 37 chr1 164054197 164054232 -118139432 + L1ME2 LINE L1 6285 6316 -242 1783 164 10 0 chr1 164055560 164055864 -118137800 + AluSg SINE Alu 1 307 -3 400 279 7 14 chr1 164056037 164056184 -118137480 + MIR SINE MIR 96 241 -21 373 189 42 42 chr1 164057187 164057282 -118136382 - L1MB5 LINE L1 -9 6165 6071 1105 201 5 5 chr1 164059917 164060121 -118133543 + AluJb SINE Alu 1 204 -108 2310 70 0 36 chr1 164060207 164060509 -118133155 + AluY SINE Alu 1 291 -20 1931 144 6 6 chr1 164060519 164060831 -118132833 + AluSx SINE Alu 1 312 0 1849 143 0 0 chr1 164061910 164062183 -118131481 + AluSg SINE Alu 1 273 -37 218 109 43 0 chr1 164062185 164062231 -118131433 + A-rich Low_complexity Low_complexity 1 48 0 427 272 7 14 chr1 164062381 164062528 -118131136 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 164063475 164063570 -118130094 - L1MB5 LINE L1 -9 6165 6071 1861 149 0 0 chr1 164066673 164066948 -118126716 - AluSx SINE Alu 0 312 38 16543 80 5 37 chr1 164067666 164069053 -118124611 - L1P LINE L1 -2920 3226 1795 5488 43 9 0 chr1 164069053 164069705 -118123959 + L1PA4 LINE L1 5494 6151 -4 204 40 0 0 chr1 164069705 164069730 -118123934 + (TA)n Simple_repeat Simple_repeat 2 26 0 16543 80 5 37 chr1 164069730 164070772 -118122892 - L1P LINE L1 -4349 1797 875 429 36 0 0 chr1 164072993 164073048 -118120616 + (TG)n Simple_repeat Simple_repeat 2 56 0 254 150 25 38 chr1 164074132 164074212 -118119452 + GA-rich Low_complexity Low_complexity 2 80 0 246 143 0 0 chr1 164074613 164074662 -118119002 + (TC)n Simple_repeat Simple_repeat 1 49 0 239 347 11 34 chr1 164075813 164075989 -118117675 + L1MC4 LINE L1 7460 7631 -411 572 308 50 46 chr1 164076000 164076439 -118117225 - L1MC4 LINE L1 -413 7629 7189 255 93 0 0 chr1 164076801 164076844 -118116820 + (TG)n Simple_repeat Simple_repeat 1 43 0 251 203 72 0 chr1 164078086 164078155 -118115509 - MLT2B3 LTR ERVL -64 490 417 614 281 21 10 chr1 164078180 164078372 -118115292 - MLT2D LTR ERVL -220 194 1 902 259 43 40 chr1 164078372 164078770 -118114894 - L1M4 LINE L1 -889 5257 4859 1601 152 0 27 chr1 164079070 164079333 -118114331 + AluSq SINE Alu 50 305 -8 310 238 213 48 chr1 164079337 164079652 -118114012 + L1MEc LINE L1 987 1353 -5210 353 282 92 27 chr1 164079694 164080093 -118113571 + L1MEc LINE L1 1265 1683 -4701 * 1043 238 90 90 chr1 164080085 164080186 -118113478 + L1M4 LINE L1 4190 4289 -1857 378 42 0 0 chr1 164080186 164080234 -118113430 + (CA)n Simple_repeat Simple_repeat 2 49 0 1043 238 90 90 chr1 164080234 164080646 -118113018 + L1M4 LINE L1 4289 4703 -1443 1261 218 11 4 chr1 164080722 164080997 -118112667 - AluJo SINE Alu -9 303 27 2340 84 0 17 chr1 164081156 164081454 -118112210 + AluY SINE Alu 1 293 -18 228 206 29 0 chr1 164081466 164081571 -118112093 + (TA)n Simple_repeat Simple_repeat 1 108 0 230 268 126 16 chr1 164082502 164082629 -118111035 + MIR SINE MIR 106 246 -16 309 347 62 14 chr1 164082702 164082990 -118110674 - L1ME LINE L1 -330 5791 5490 284 251 218 0 chr1 164083277 164083488 -118110176 - HAL1 LINE L1 -146 2361 2105 234 325 12 0 chr1 164084733 164084813 -118108851 + CT-rich Low_complexity Low_complexity 3 83 0 495 125 0 0 chr1 164085715 164085787 -118107877 - tRNA-Gln-CAG tRNA tRNA -3 72 1 2125 163 30 0 chr1 164086573 164086934 -118106730 - LOR1b LTR ERV1 -2 459 88 484 145 13 0 chr1 164086939 164087015 -118106649 + AluJb SINE Alu 57 133 -179 12869 147 17 32 chr1 164087032 164089136 -118104528 + L1P LINE L1 11 2082 -4064 2505 74 0 13 chr1 164089136 164089445 -118104219 + AluY SINE Alu 1 305 -6 12869 147 17 32 chr1 164089445 164089580 -118104084 + L1P LINE L1 2082 2217 -3929 42596 65 1 1 chr1 164089589 164095716 -118097948 + L1PA6 LINE L1 11 6138 -16 3674 253 66 34 chr1 164095730 164097150 -118096514 - L1M1 LINE L1 -4984 2581 16 315 272 92 40 chr1 164097357 164097530 -118096134 + MER5A DNA MER1_type 7 188 -1 386 250 23 15 chr1 164099251 164099383 -118094281 - MIR3 SINE MIR -32 176 44 464 291 100 35 chr1 164106666 164106896 -118086768 - MIR SINE MIR -15 247 3 222 37 0 0 chr1 164107742 164107769 -118085895 + (TC)n Simple_repeat Simple_repeat 2 28 0 229 245 0 21 chr1 164107769 164107863 -118085801 + (TA)n Simple_repeat Simple_repeat 2 93 0 262 169 0 52 chr1 164107863 164107940 -118085724 - LOR1-int LTR ERV1 -7194 926 854 244 279 47 0 chr1 164107941 164108027 -118085637 - L1MC4 LINE L1 -1339 6703 6614 323 178 0 14 chr1 164108029 164108102 -118085562 + (TA)n Simple_repeat Simple_repeat 2 73 0 1019 241 80 13 chr1 164108172 164108483 -118085181 - MER46C DNA MER2_type -5 333 2 470 335 118 21 chr1 164109152 164109678 -118083986 - L3 LINE CR1 -234 1343 767 255 246 22 87 chr1 164110744 164110882 -118082782 - MIR3 SINE MIR -42 166 38 424 365 97 3 chr1 164111690 164112019 -118081645 - L3 LINE CR1 -1211 366 7 22 0 0 0 chr1 164112154 164112176 -118081488 + AT_rich Low_complexity Low_complexity 1 22 0 452 299 49 18 chr1 164116322 164116486 -118077178 - MER5B DNA MER1_type -3 175 7 299 208 89 22 chr1 164117394 164117495 -118076169 + MIR SINE MIR 23 130 -78 2071 157 0 0 chr1 164117543 164117848 -118075816 + AluJb SINE Alu 1 305 -7 507 229 9 0 chr1 164122309 164122414 -118071250 + MER5C DNA MER1_type 1 106 -218 289 111 0 148 chr1 164122494 164122575 -118071089 + MER5C DNA MER1_type 255 323 -1 2287 119 0 6 chr1 164124628 164124939 -118068725 + AluSx SINE Alu 1 309 -3 182 298 186 37 chr1 164125107 164125295 -118068369 - L2 LINE L2 -768 2546 2331 698 176 16 43 chr1 164125941 164126129 -118067535 + MER53 DNA DNA 4 186 -3 350 195 24 130 chr1 164126422 164126545 -118067119 + MIR SINE MIR 121 230 -32 29 0 0 0 chr1 164126553 164126582 -118067082 + AT_rich Low_complexity Low_complexity 1 29 0 205 333 99 57 chr1 164126672 164126813 -118066851 + MIR3 SINE MIR 23 169 -39 622 243 14 75 chr1 164127197 164127411 -118066253 + MIR SINE MIR 33 233 -29 221 368 40 0 chr1 164127607 164127683 -118065981 - MIR3 SINE MIR -22 186 108 519 264 204 18 chr1 164127854 164128074 -118065590 + MIR SINE MIR 2 262 0 621 265 57 24 chr1 164129123 164129335 -118064329 + MIR SINE MIR 24 240 -22 2396 50 7 7 chr1 164129339 164129641 -118064023 + AluY SINE Alu 4 305 -6 2232 105 0 0 chr1 164129872 164130168 -118063496 + AluSx SINE Alu 1 296 -16 253 192 0 0 chr1 164130168 164130220 -118063444 + Alu SINE Alu 244 295 -6 1978 121 4 0 chr1 164130224 164130504 -118063160 + AluY SINE Alu 1 281 -30 1635 245 71 83 chr1 164130609 164130704 -118062960 - L1MC4a LINE L1 -332 5789 6660 1553 88 171 12 chr1 164130704 164130955 -118062709 - AluSc SINE Alu -8 291 1 1635 245 71 83 chr1 164130955 164131948 -118061716 - L1MC4a LINE L1 540 6661 5658 2204 90 0 24 chr1 164132407 164132697 -118060967 + AluSq SINE Alu 1 283 -30 210 143 0 0 chr1 164132701 164132736 -118060928 + (TAA)n Simple_repeat Simple_repeat 3 37 0 337 340 68 39 chr1 164132841 164133060 -118060604 - MIR SINE MIR -4 258 36 468 198 74 158 chr1 164133852 164134054 -118059610 + MIR SINE MIR 1 185 -77 * 958 296 123 15 chr1 164134051 164134507 -118059157 - L2 LINE L2 0 3313 2809 190 322 85 17 chr1 164134475 164134593 -118059071 + MIR SINE MIR 136 261 -1 * 2321 87 7 0 chr1 164134598 164134886 -118058778 - AluSg SINE Alu -20 290 1 594 196 26 52 chr1 164134974 164135168 -118058496 - L1MC5 LINE L1 -659 7302 7114 825 307 38 0 chr1 164135480 164135718 -118057946 - MIR SINE MIR -13 249 3 196 374 22 22 chr1 164136723 164136862 -118056802 + MIR3 SINE MIR 33 171 -37 896 201 34 38 chr1 164137071 164137280 -118056384 - MER3 DNA MER1_type -1 208 1 716 186 0 16 chr1 164140500 164140629 -118053035 + FLAM_A SINE Alu 3 129 -4 3995 159 57 18 chr1 164140706 164141574 -118052090 - L1MA7 LINE L1 -2 6289 5389 452 104 0 26 chr1 164141965 164142081 -118051583 + L1PA3 LINE L1 6078 6191 0 237 274 96 0 chr1 164142938 164143011 -118050653 + L3 LINE CR1 619 698 -879 2276 84 0 32 chr1 164144905 164145216 -118048448 - AluY SINE Alu -10 301 1 395 275 42 25 chr1 164145548 164145668 -118047996 - MIR3 SINE MIR -17 191 70 193 162 54 0 chr1 164146405 164146442 -118047222 - MER5A DNA MER1_type 0 189 151 2399 94 3 0 chr1 164146444 164146753 -118046911 + AluSx SINE Alu 1 310 -2 183 326 132 39 chr1 164146763 164146892 -118046772 + MER5B DNA MER1_type 29 169 -9 * 352 300 64 21 chr1 164146887 164147027 -118046637 - MIR SINE MIR -17 245 100 511 252 84 7 chr1 164147136 164147279 -118046385 - L2 LINE L2 -1 3271 3118 428 307 42 12 chr1 164147501 164147667 -118045997 + MIR3 SINE MIR 16 186 -22 180 382 122 15 chr1 164148383 164148514 -118045150 - L2 LINE L2 -13 3259 3115 257 250 40 50 chr1 164148782 164148882 -118044782 - L2 LINE L2 -15 3257 3159 469 231 58 0 chr1 164149300 164149421 -118044243 + MER3 DNA MER1_type 82 209 0 231 222 0 0 chr1 164149382 164149427 -118044237 - MER3 DNA MER1_type -123 86 42 * 577 255 190 15 chr1 164150303 164150503 -118043161 + MIR SINE MIR 2 236 -26 428 274 63 51 chr1 164150778 164150953 -118042711 + MIR SINE MIR 50 226 -36 200 173 39 0 chr1 164152454 164152506 -118041158 + CT-rich Low_complexity Low_complexity 3 56 0 309 304 78 0 chr1 164153667 164153782 -118039882 - L2 LINE L2 0 3272 3149 282 321 73 37 chr1 164153799 164153908 -118039756 + MIR3 SINE MIR 74 186 -22 991 294 128 33 chr1 164154246 164154646 -118039018 + L2 LINE L2 2458 2819 -494 1464 132 36 66 chr1 164154646 164154979 -118038685 + MER33 DNA MER1_type 1 323 -1 991 294 128 33 chr1 164154979 164155355 -118038309 + L2 LINE L2 2819 3301 -12 182 308 15 46 chr1 164155358 164155423 -118038241 + L2 LINE L2 3194 3256 -16 24 0 0 0 chr1 164155923 164155947 -118037717 + AT_rich Low_complexity Low_complexity 1 24 0 1381 175 11 42 chr1 164155950 164156305 -118037359 - L1MC4 LINE L1 0 8042 7699 2003 111 3 10 chr1 164157130 164157419 -118036245 + AluSg SINE Alu 1 287 -23 468 355 52 62 chr1 164158862 164158895 -118034769 - L2 LINE L2 -16 3256 3224 1466 160 94 31 chr1 164158895 164159004 -118034660 + MER44D DNA MER2_type 1 102 -2389 1814 91 16 16 chr1 164159004 164159256 -118034408 - AluY SINE Alu -19 292 41 1466 160 94 31 chr1 164159256 164159465 -118034199 + MER44D DNA MER2_type 102 609 0 468 355 52 62 chr1 164159465 164159755 -118033909 - L2 LINE L2 -48 3224 2936 26 30 0 0 chr1 164159767 164159800 -118033864 + AT_rich Low_complexity Low_complexity 1 33 0 2573 45 0 16 chr1 164159803 164160162 -118033502 - AluY SINE Alu 0 354 1 2368 93 6 6 chr1 164160199 164160512 -118033152 - AluSp SINE Alu 0 313 1 2262 100 0 0 chr1 164160719 164161010 -118032654 + AluSg1 SINE Alu 1 291 -18 265 299 15 0 chr1 164162000 164162067 -118031597 - L2 LINE L2 -8 3305 3238 318 371 47 35 chr1 164162197 164162429 -118031235 + L2 LINE L2 2862 3096 -176 793 244 54 23 chr1 164164250 164164471 -118029193 - MIR SINE MIR -1 261 34 263 327 65 9 chr1 164164738 164164845 -118028819 - L2 LINE L2 -4 3268 3156 777 149 0 8 chr1 164165308 164165429 -118028235 - FLAM_C SINE Alu -13 120 1 2160 123 7 0 chr1 164165808 164166109 -118027555 - AluSx SINE Alu -9 303 1 612 235 27 11 chr1 164166616 164166799 -118026865 - MER5A DNA MER1_type -3 186 1 672 246 124 105 chr1 164167325 164167546 -118026118 - L2 LINE L2 0 3313 3081 1376 125 85 0 chr1 164167546 164167794 -118025870 - L1MA9 LINE L1 0 6312 6044 672 246 124 105 chr1 164167794 164167934 -118025730 - L2 LINE L2 -232 3081 2945 1641 233 63 122 chr1 164169102 164169282 -118024382 - L1MC4a LINE L1 -332 5789 5600 462 68 0 0 chr1 164169282 164169341 -118024323 - AluY SINE Alu -18 294 236 1488 62 10 10 chr1 164169341 164169534 -118024130 - AluY SINE Alu -118 193 1 1641 233 63 122 chr1 164169534 164170527 -118023137 - L1MC4a LINE L1 588 6709 5658 2165 93 0 24 chr1 164170986 164171276 -118022388 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr1 164171280 164171303 -118022361 + (TAA)n Simple_repeat Simple_repeat 3 25 0 337 340 68 39 chr1 164171408 164171627 -118022037 - MIR SINE MIR -4 258 36 438 208 74 158 chr1 164172418 164172620 -118021044 + MIR SINE MIR 1 185 -77 * 949 296 123 15 chr1 164172617 164173073 -118020591 - L2 LINE L2 0 3313 2809 2323 87 7 0 chr1 164173164 164173452 -118020212 - AluSg SINE Alu -20 290 1 675 196 26 52 chr1 164173540 164173734 -118019930 - L1MC5 LINE L1 -659 7302 7114 843 155 0 31 chr1 164174573 164174702 -118018962 - AluSq/x SINE Alu -179 133 9 1019 148 0 0 chr1 164174703 164174852 -118018812 - FRAM SINE Alu -28 148 1 275 299 34 79 chr1 164175035 164175326 -118018338 + L2 LINE L2 1589 1866 -1448 322 227 0 0 chr1 164175449 164175515 -118018149 + L2 LINE L2 3206 3271 -1 408 300 64 0 chr1 164176127 164176267 -118017397 + MIR SINE MIR 111 259 -3 1438 105 0 0 chr1 164176319 164176509 -118017155 + AluSg/x SINE Alu 106 295 -15 209 128 26 0 chr1 164176725 164176764 -118016900 + T-rich Low_complexity Low_complexity 2 41 0 804 108 0 0 chr1 164182216 164182318 -118011346 + AluSp/q SINE Alu 197 298 -15 839 164 8 15 chr1 164183889 164184023 -118009641 + FLAM_A SINE Alu 1 133 0 801 307 38 0 chr1 164184414 164184652 -118009012 - MIR SINE MIR -13 249 3 198 374 22 22 chr1 164186653 164186792 -118006872 + MIR3 SINE MIR 33 171 -37 993 201 34 38 chr1 164187001 164187210 -118006454 - MER3 DNA MER1_type -1 208 1 766 186 0 16 chr1 164190429 164190558 -118003106 + FLAM_A SINE Alu 3 129 -4 4396 151 58 28 chr1 164190635 164191509 -118002155 - L1MA7 LINE L1 -2 6289 5389 294 27 81 0 chr1 164191895 164191932 -118001732 - L1PA3 LINE L1 -57 6098 6059 * 481 113 0 25 chr1 164191900 164192042 -118001622 + L1PA3 LINE L1 6078 6217 0 235 274 96 0 chr1 164192871 164192944 -118000720 + L3 LINE CR1 619 698 -879 2329 74 0 32 chr1 164194838 164195150 -117998514 - AluY SINE Alu -9 302 1 374 269 37 28 chr1 164195482 164195590 -117998074 - MIR3 SINE MIR -17 191 83 194 162 54 0 chr1 164196338 164196375 -117997289 - MER5A DNA MER1_type 0 189 151 2331 104 3 0 chr1 164196377 164196684 -117996980 + AluSx SINE Alu 1 308 -4 344 300 64 21 chr1 164196812 164196952 -117996712 - MIR SINE MIR -17 245 100 489 259 84 7 chr1 164197061 164197204 -117996460 - L2 LINE L2 -1 3271 3118 422 307 42 12 chr1 164197426 164197592 -117996072 + MIR3 SINE MIR 16 186 -22 255 260 40 50 chr1 164198707 164198807 -117994857 - L2 LINE L2 -15 3257 3159 530 236 57 0 chr1 164199223 164199346 -117994318 + MER3 DNA MER1_type 80 209 0 249 245 0 0 chr1 164199303 164199352 -117994312 - MER3 DNA MER1_type -119 90 42 * 564 239 199 30 chr1 164200228 164200429 -117993235 + MIR SINE MIR 2 236 -26 423 274 63 51 chr1 164200704 164200879 -117992785 + MIR SINE MIR 50 226 -36 714 203 161 46 chr1 164201782 164201950 -117991714 + MIR SINE MIR 4 204 -58 2283 110 0 0 chr1 164201950 164202251 -117991413 + AluSx SINE Alu 1 301 -11 714 203 161 46 chr1 164202251 164202299 -117991365 + MIR SINE MIR 204 245 -17 476 191 119 16 chr1 164202365 164202491 -117991173 - MLT1H1 LTR MaLR 0 555 404 2107 114 7 10 chr1 164202810 164203100 -117990564 - AluSg SINE Alu -21 289 1 283 111 0 148 chr1 164205153 164205234 -117988430 - MER5C DNA MER1_type -1 323 255 504 229 9 0 chr1 164205314 164205419 -117988245 - MER5C DNA MER1_type -218 106 1 2094 153 0 0 chr1 164209880 164210187 -117983477 - AluJb SINE Alu -5 307 1 331 215 117 23 chr1 164210204 164210336 -117983328 - MIR SINE MIR -78 130 23 500 299 49 18 chr1 164211244 164211408 -117982256 + MER5B DNA MER1_type 7 175 -3 22 0 0 0 chr1 164215554 164215576 -117978088 + AT_rich Low_complexity Low_complexity 1 22 0 509 362 97 3 chr1 164215712 164216041 -117977623 + L3 LINE CR1 7 366 -1211 309 244 32 96 chr1 164216830 164216986 -117976678 + MIR3 SINE MIR 21 166 -42 642 329 122 25 chr1 164218052 164218578 -117975086 + L3 LINE CR1 767 1343 -234 1071 226 89 19 chr1 164219247 164219561 -117974103 + MER46C DNA MER2_type 2 337 -1 410 202 0 10 chr1 164219628 164219727 -117973937 + (TA)n Simple_repeat Simple_repeat 2 99 0 234 314 47 0 chr1 164219729 164219815 -117973849 + L1MC4 LINE L1 6614 6703 -1339 253 222 37 0 chr1 164219815 164219869 -117973795 + (TATATG)n Simple_repeat Simple_repeat 6 61 0 262 302 47 0 chr1 164219869 164219955 -117973709 + L1MC4 LINE L1 6614 6703 -1339 198 242 11 21 chr1 164219965 164220060 -117973604 + (TA)n Simple_repeat Simple_repeat 2 95 0 258 32 0 0 chr1 164220060 164220091 -117973573 + (GA)n Simple_repeat Simple_repeat 2 32 0 524 291 100 35 chr1 164220937 164221167 -117972497 + MIR SINE MIR 3 247 -15 186 389 58 0 chr1 164221259 164221398 -117972266 - MIR SINE MIR -96 166 20 443 242 23 15 chr1 164227471 164227603 -117966061 + MIR3 SINE MIR 44 176 -32 381 279 89 39 chr1 164229324 164229503 -117964161 - MER5A DNA MER1_type -1 188 1 21 0 0 0 chr1 164229579 164229600 -117964064 + AT_rich Low_complexity Low_complexity 1 21 0 3769 253 61 34 chr1 164229703 164231129 -117962535 + L1M1 LINE L1 16 2581 -4984 42513 65 2 1 chr1 164231143 164237265 -117956399 - L1PA6 LINE L1 -16 6138 11 12771 151 17 32 chr1 164237274 164237409 -117956255 - L1P LINE L1 -3929 2217 2082 2263 83 0 13 chr1 164237409 164237711 -117955953 - AluY SINE Alu -13 298 1 12771 151 17 32 chr1 164237711 164239814 -117953850 - L1P LINE L1 -4064 2082 11 483 145 13 0 chr1 164239835 164239911 -117953753 - AluJb SINE Alu -179 133 57 2085 172 30 0 chr1 164239916 164240277 -117953387 + LOR1b LTR ERV1 88 459 -2 497 125 0 0 chr1 164241063 164241135 -117952529 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 271 0 29 chr1 164242047 164242117 -117951547 + GA-rich Low_complexity Low_complexity 2 69 0 279 251 218 0 chr1 164243361 164243572 -117950092 + HAL1 LINE L1 2105 2361 -146 280 347 62 14 chr1 164243864 164244152 -117949512 + L1ME LINE L1 5490 5791 -330 320 252 126 16 chr1 164244225 164244352 -117949312 - MIR SINE MIR -16 246 106 227 222 0 0 chr1 164245273 164245336 -117948328 + L1MA9 LINE L1 6214 6276 -36 31 58 0 0 chr1 164245345 164245397 -117948267 + AT_rich Low_complexity Low_complexity 1 52 0 2199 84 0 17 chr1 164245400 164245696 -117947968 - AluY SINE Alu -20 291 1 1188 214 11 4 chr1 164245855 164246130 -117947534 + AluJo SINE Alu 27 303 -9 1075 252 111 36 chr1 164246206 164246619 -117947045 - L1 LINE L1 -1443 4703 4260 308 138 15 0 chr1 164246619 164246684 -117946980 + (TG)n Simple_repeat Simple_repeat 2 67 0 256 235 0 0 chr1 164246702 164246753 -117946911 - L1 LINE L1 -1901 4245 4195 * 336 281 146 30 chr1 164246750 164247510 -117946154 - L1MEc LINE L1 -4732 1492 793 1586 134 0 27 chr1 164247510 164247772 -117945892 - AluSq SINE Alu -1 312 58 336 281 146 30 chr1 164247772 164247818 -117945846 - L1MEc LINE L1 -5431 793 754 892 259 37 45 chr1 164248080 164248482 -117945182 + L1M4 LINE L1 4859 5257 -889 690 289 10 0 chr1 164248482 164248683 -117944981 + MLT2B1 LTR ERVL 1 203 -317 244 188 72 0 chr1 164248699 164248768 -117944896 + MLT2B1 LTR ERVL 367 440 -75 348 88 0 0 chr1 164250010 164250067 -117943597 + (CA)n Simple_repeat Simple_repeat 1 57 0 566 317 46 41 chr1 164250429 164250868 -117942796 + L1MC4 LINE L1 7189 7629 -413 364 341 23 45 chr1 164250879 164251055 -117942609 - L1MC4 LINE L1 -411 7631 7460 228 170 0 0 chr1 164252212 164252265 -117941399 + GA-rich Low_complexity Low_complexity 1 53 0 266 163 38 12 chr1 164252662 164252742 -117940922 + CT-rich Low_complexity Low_complexity 2 83 0 369 0 0 0 chr1 164253834 164253875 -117939789 + (CA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr1 164253874 164253895 -117939769 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 221 146 21 0 chr1 164255394 164255442 -117938222 + GA-rich Low_complexity Low_complexity 1 49 0 378 57 0 0 chr1 164256945 164256998 -117936666 + (CA)n Simple_repeat Simple_repeat 2 54 0 16310 81 5 44 chr1 164259216 164260276 -117933388 + L1P LINE L1 875 1975 -4171 5491 43 9 0 chr1 164260276 164260930 -117932734 - L1PA4 LINE L1 -2 6153 5494 16310 81 5 44 chr1 164260930 164262317 -117931347 + L1P LINE L1 1975 3226 -2920 1680 164 0 0 chr1 164263034 164263303 -117930361 + AluSx SINE Alu 38 306 -6 404 242 0 0 chr1 164266401 164266496 -117927168 + L1MB5 LINE L1 6071 6165 -9 451 286 7 14 chr1 164267443 164267590 -117926074 - MIR SINE MIR -21 241 96 251 102 0 20 chr1 164267743 164267792 -117925872 + (TTA)n Simple_repeat Simple_repeat 1 48 0 1775 136 0 0 chr1 164267794 164268067 -117925597 - AluSg SINE Alu -37 273 1 1769 156 7 0 chr1 164269146 164269453 -117924211 - AluSx SINE Alu -3 309 1 2241 79 0 16 chr1 164269459 164269764 -117923900 - AluY SINE Alu -11 300 1 935 221 5 5 chr1 164269847 164270051 -117923613 - AluJb SINE Alu -108 204 1 334 221 42 42 chr1 164272689 164272784 -117920880 + L1MB5 LINE L1 6071 6165 -9 451 279 7 14 chr1 164273755 164273902 -117919762 - MIR SINE MIR -21 241 96 1760 166 10 0 chr1 164274067 164274374 -117919290 - AluSg SINE Alu 0 310 1 956 279 125 30 chr1 164275704 164275739 -117917925 - L1ME2 LINE L1 -242 5922 5892 2045 73 25 98 chr1 164275739 164276066 -117917598 - AluYb8 SINE Alu -15 303 1 956 279 125 30 chr1 164276066 164276998 -117916666 - L1ME2 LINE L1 -272 5892 4862 1538 101 10 0 chr1 164277027 164277236 -117916428 + L1PA6 LINE L1 5909 6119 -35 593 175 42 0 chr1 164277236 164277402 -117916262 + (TA)n Simple_repeat Simple_repeat 1 173 0 1917 143 7 10 chr1 164277645 164277962 -117915702 + AluSx SINE Alu 1 312 0 503 313 6 28 chr1 164278264 164278446 -117915218 + MER5B DNA MER1_type 1 178 0 244 330 25 0 chr1 164279097 164279215 -117914449 - LTR16A1 LTR ERVL 0 457 337 235 238 29 19 chr1 164280197 164280302 -117913362 + (TA)n Simple_repeat Simple_repeat 2 107 0 188 393 44 38 chr1 164281420 164281603 -117912061 - MIR SINE MIR -65 197 14 2012 136 0 67 chr1 164282419 164282780 -117910884 - MER1B DNA MER1_type 0 337 1 231 305 39 7 chr1 164282933 164283087 -117910577 - MER46C DNA MER2_type -8 330 172 1949 102 64 20 chr1 164283153 164283448 -117910216 - AluSx SINE Alu -2 310 3 1915 187 35 156 chr1 164283448 164283659 -117910005 - L1 LINE L1 -2576 3570 3335 2495 29 0 88 chr1 164283659 164284000 -117909664 - AluY SINE Alu 0 311 1 1915 187 35 156 chr1 164284000 164284162 -117909502 - L1 LINE L1 -2811 3335 3155 255 258 32 32 chr1 164284162 164284255 -117909409 + AluSq/x SINE Alu 41 133 -170 1915 187 35 156 chr1 164284255 164284276 -117909388 - L1 LINE L1 -2991 3155 3133 216 0 0 0 chr1 164284276 164284300 -117909364 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1915 187 35 156 chr1 164284300 164284747 -117908917 - L1 LINE L1 -3013 3133 2748 1597 198 9 3 chr1 164284761 164285089 -117908575 - L1MA4 LINE L1 -6 6294 5965 976 284 122 5 chr1 164285185 164285741 -117907923 - L1M4 LINE L1 -1231 4915 4295 1347 51 0 0 chr1 164287036 164287194 -117906470 + L1PA5 LINE L1 5997 6154 0 199 212 59 71 chr1 164288127 164288212 -117905452 + L2 LINE L2 3179 3262 -10 2204 94 3 3 chr1 164288577 164288895 -117904769 + AluSq SINE Alu 1 318 0 270 364 41 8 chr1 164289261 164289382 -117904282 + L2 LINE L2 3148 3272 0 1903 134 0 3 chr1 164290480 164290764 -117902900 + AluSq SINE Alu 1 283 -30 295 111 0 0 chr1 164290879 164290924 -117902740 - AluSq/x SINE Alu -199 104 60 1647 174 0 11 chr1 164290924 164291200 -117902464 + AluJb SINE Alu 22 294 -18 2590 55 3 0 chr1 164291204 164291514 -117902150 + AluY SINE Alu 1 311 0 449 244 57 24 chr1 164291758 164291881 -117901783 - MIR3 SINE MIR -17 191 65 21 0 0 0 chr1 164292487 164292508 -117901156 + AT_rich Low_complexity Low_complexity 1 21 0 227 285 62 0 chr1 164292521 164292651 -117901013 - MIR3 SINE MIR -3 205 68 263 300 19 113 chr1 164293363 164293523 -117900141 + MLT1E3-int LTR MaLR 959 1103 -268 1308 45 0 13 chr1 164293542 164293698 -117899966 + L1PA2 LINE L1 6002 6155 0 571 220 92 29 chr1 164293704 164293877 -117899787 + MLT1E3-int LTR MaLR 1100 1283 -88 580 268 160 14 chr1 164294007 164294480 -117899184 + MLT1E3 LTR MaLR 13 626 0 312 294 27 41 chr1 164295045 164295191 -117898473 + L1MB8 LINE L1 5998 6141 -37 291 239 26 35 chr1 164295303 164295416 -117898248 - L1ME4a LINE L1 -43 6078 5967 325 301 55 18 chr1 164295428 164295591 -117898073 - HAL1b LINE L1 0 1348 1180 321 279 90 60 chr1 164295632 164295865 -117897799 - HAL1b LINE L1 -138 1210 971 815 132 151 0 chr1 164295936 164296088 -117897576 - AluSg/x SINE Alu -1 309 135 1165 240 80 31 chr1 164296176 164296564 -117897100 - L1ME2 LINE L1 -119 6045 5653 313 299 56 49 chr1 164296763 164296907 -117896757 - MIR SINE MIR -65 197 53 281 174 72 58 chr1 164297724 164297793 -117895871 + MER45B DNA AcHobo 311 380 -660 33 25 0 0 chr1 164298224 164298264 -117895400 + AT_rich Low_complexity Low_complexity 1 40 0 769 316 74 27 chr1 164298279 164298914 -117894750 - L1ME4a LINE L1 -54 6067 5403 2619 98 13 46 chr1 164300196 164300584 -117893080 - THE1C LTR MaLR 0 375 1 207 327 75 0 chr1 164300725 164300832 -117892832 + L2 LINE L2 3196 3310 -3 31 26 0 0 chr1 164301886 164301924 -117891740 + AT_rich Low_complexity Low_complexity 1 38 0 294 276 126 49 chr1 164302247 164302456 -117891208 - L1M4c LINE L1 -4547 1835 1537 4624 151 6 0 chr1 164302952 164303852 -117889812 - L1PB4 LINE L1 -3 6153 5228 497 194 0 0 chr1 164303865 164303958 -117889706 - MER31A LTR ERV1 -28 457 365 258 32 0 0 chr1 164303987 164304018 -117889646 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2892 54 0 0 chr1 164304018 164304352 -117889312 - L1PA5 LINE L1 -18 6136 5803 237 176 0 54 chr1 164304512 164304586 -117889078 + (TA)n Simple_repeat Simple_repeat 1 70 0 186 317 67 29 chr1 164305559 164305665 -117887999 + MIR SINE MIR 35 143 -66 259 78 39 0 chr1 164306070 164306121 -117887543 + T-rich Low_complexity Low_complexity 2 54 0 230 339 48 18 chr1 164306271 164306436 -117887228 + MIR SINE MIR 20 189 -73 2372 61 0 48 chr1 164306752 164307065 -117886599 + AluY SINE Alu 1 298 -13 962 226 84 65 chr1 164307169 164307536 -117886128 - MLT1B LTR MaLR -16 374 1 2785 113 5 0 chr1 164307554 164307925 -117885739 + THE1C LTR MaLR 2 374 -1 386 353 65 7 chr1 164309186 164309339 -117884325 + MIR SINE MIR 7 168 -94 1619 178 170 19 chr1 164309805 164310228 -117883436 + MLT2B1 LTR ERVL 1 534 -20 212 200 18 0 chr1 164310233 164310288 -117883376 + (TA)n Simple_repeat Simple_repeat 1 56 0 23 0 0 0 chr1 164310384 164310407 -117883257 + AT_rich Low_complexity Low_complexity 1 23 0 272 293 0 24 chr1 164310568 164310650 -117883014 + (CATG)n Simple_repeat Simple_repeat 1 80 0 2054 187 28 30 chr1 164310650 164311209 -117882455 - MLT2A2 LTR ERVL 0 554 1 327 319 61 74 chr1 164311975 164312717 -117880947 + HAL1b LINE L1 77 808 -540 350 279 74 25 chr1 164313645 164313767 -117879897 + MER94 DNA DNA 3 130 -4 1058 252 104 21 chr1 164313985 164314322 -117879342 - MLT1A1 LTR MaLR 0 365 1 340 319 40 49 chr1 164314357 164314583 -117879081 - LTR33 LTR ERVL -288 233 10 183 385 41 50 chr1 164315098 164315316 -117878348 + L2 LINE L2 2572 2787 -527 2233 108 0 19 chr1 164315741 164316056 -117877608 - AluSc SINE Alu 0 309 1 2319 106 0 3 chr1 164316571 164316883 -117876781 - AluY SINE Alu 0 311 1 482 199 50 21 chr1 164317189 164317330 -117876334 - Charlie7 DNA MER1_type -1699 913 769 1301 278 86 20 chr1 164317358 164317965 -117875699 - Charlie7 DNA MER1_type -1922 690 44 2325 109 0 0 chr1 164319305 164319608 -117874056 - AluSx SINE Alu -9 303 1 1970 129 0 0 chr1 164320287 164320566 -117873098 + AluSx SINE Alu 24 302 -10 224 268 0 0 chr1 164320655 164320696 -117872968 - L2 LINE L2 -92 3180 3140 220 337 43 31 chr1 164320705 164320868 -117872796 - L2 LINE L2 0 3313 3149 1013 236 131 47 chr1 164321262 164321986 -117871678 + L1MCa LINE L1 1489 2542 -4065 1657 260 68 29 chr1 164322041 164322736 -117870928 + L1MCa LINE L1 2625 3346 -3080 324 290 93 22 chr1 164322899 164323223 -117870441 - L1M4 LINE L1 -1583 4563 4217 305 253 84 48 chr1 164323844 164324010 -117869654 + MER104 DNA Tc2 5 176 -4 222 369 39 15 chr1 164324698 164324828 -117868836 + L2 LINE L2 2232 2364 -950 264 339 16 16 chr1 164325457 164325584 -117868080 + L2 LINE L2 2927 3053 -219 1203 207 23 12 chr1 164327753 164328009 -117865655 - L1MB3 LINE L1 -2 6181 5923 272 70 23 0 chr1 164328009 164328052 -117865612 + MADE1 DNA Mariner 37 80 0 231 140 260 0 chr1 164328053 164328073 -117865591 - L1MB3 LINE L1 -244 5924 5910 213 94 0 0 chr1 164328073 164328105 -117865559 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 231 140 260 0 chr1 164328105 164328134 -117865530 - L1MB3 LINE L1 -258 5910 5862 264 242 16 0 chr1 164328702 164328764 -117864900 - MIR SINE MIR -108 154 92 941 174 0 7 chr1 164328903 164329058 -117864606 - AluSg/x SINE Alu -27 285 132 480 18 0 0 chr1 164329058 164329115 -117864549 + (TG)n Simple_repeat Simple_repeat 2 58 0 614 285 50 32 chr1 164329643 164329864 -117863800 - MIR SINE MIR -18 244 20 22 0 0 0 chr1 164330045 164330067 -117863597 + AT_rich Low_complexity Low_complexity 1 22 0 2019 136 20 0 chr1 164330158 164330452 -117863212 - AluSx SINE Alu -12 300 1 25 75 0 0 chr1 164331076 164331129 -117862535 + AT_rich Low_complexity Low_complexity 1 53 0 1987 190 5 42 chr1 164331153 164331558 -117862106 + MLT1B LTR MaLR 1 390 0 229 65 0 0 chr1 164331572 164331618 -117862046 - LTR66 LTR ERVL -171 439 394 281 221 0 0 chr1 164331618 164331686 -117861978 + L1MC4 LINE L1 6636 6703 -1339 1406 212 13 0 chr1 164331715 164331951 -117861713 + MER8 DNA MER2_type 1 239 0 7287 65 11 5 chr1 164332288 164333544 -117860120 + L1PA6 LINE L1 4890 6150 -4 180 0 0 0 chr1 164333649 164333669 -117859995 + (GA)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 164333682 164333704 -117859960 + AT_rich Low_complexity Low_complexity 1 22 0 263 336 59 38 chr1 164333904 164334193 -117859471 + HAL1 LINE L1 1377 1671 -836 2503 59 3 3 chr1 164334683 164334990 -117858674 - AluY SINE Alu -4 307 1 2132 105 0 17 chr1 164335366 164335662 -117858002 + AluSq SINE Alu 1 291 -22 2897 136 56 7 chr1 164335918 164336380 -117857284 + MER31A LTR ERV1 1 485 0 751 199 61 131 chr1 164336427 164336724 -117856940 + MER31A-int LTR ERV1 15 290 -4646 648 219 19 71 chr1 164336691 164336901 -117856763 + MER31A-int LTR ERV1 201 399 -4537 * 1433 178 128 101 chr1 164337060 164337245 -117856419 + MER31A-int LTR ERV1 887 1066 -3870 2042 102 71 14 chr1 164337245 164337540 -117856124 - AluSx SINE Alu 0 312 1 1433 178 128 101 chr1 164337540 164337966 -117855698 + MER31A-int LTR ERV1 1066 1514 -3422 8988 172 49 48 chr1 164338012 164339724 -117853940 + MER31A-int LTR ERV1 3077 4090 -846 2099 100 3 7 chr1 164339724 164340014 -117853650 + AluSg SINE Alu 10 298 -12 8988 172 49 48 chr1 164340014 164340837 -117852827 + MER31A-int LTR ERV1 4090 4910 -26 236 167 379 0 chr1 164340843 164340909 -117852755 + MER31A LTR ERV1 1 91 -394 5138 22 0 0 chr1 164340955 164341510 -117852154 - L1PA3 LINE L1 -4 6151 5597 283 289 107 16 chr1 164341803 164341924 -117851740 - L2 LINE L2 0 3272 3141 25 0 0 0 chr1 164342402 164342427 -117851237 + AT_rich Low_complexity Low_complexity 1 25 0 1765 122 80 21 chr1 164345138 164345426 -117848238 - AluSq SINE Alu -8 305 1 351 297 74 0 chr1 164345807 164345955 -117847709 + MER103 DNA DNA 8 166 0 26 0 0 0 chr1 164346703 164346729 -117846935 + AT_rich Low_complexity Low_complexity 1 26 0 230 267 70 47 chr1 164347105 164347191 -117846473 + MER102a DNA MER1_type 240 327 -3 423 338 98 59 chr1 164347374 164347732 -117845932 - L2 LINE L2 -6 3266 2895 31 68 0 0 chr1 164347894 164347953 -117845711 + AT_rich Low_complexity Low_complexity 1 59 0 205 346 63 16 chr1 164348954 164349081 -117844583 + MIR SINE MIR 21 153 -109 275 303 46 18 chr1 164350140 164350249 -117843415 - MIR3 SINE MIR -31 177 66 2939 119 83 40 chr1 164352399 164352905 -117840759 - MER4D LTR ERV1 -375 528 1 300 323 16 16 chr1 164353669 164353793 -117839871 + Charlie4 DNA MER1_type 1834 1957 -4 1337 78 0 6 chr1 164354327 164354493 -117839171 + U1 snRNA snRNA 1 165 0 664 122 203 186 chr1 164354852 164355148 -117838516 - AluJb SINE Alu 0 302 2 261 296 49 0 chr1 164355256 164355336 -117838328 - MER45B DNA AcHobo -645 395 312 355 219 103 52 chr1 164355336 164355491 -117838173 + REP3 LTR ERV 1 163 -399 257 169 0 17 chr1 164355486 164355545 -117838119 - MER58 DNA MER1_type -101 2319 2262 * 235 286 77 48 chr1 164356016 164356050 -117837614 + L2 LINE L2 2351 2383 -931 2113 132 0 0 chr1 164356050 164356353 -117837311 - AluSx SINE Alu -9 303 1 235 286 77 48 chr1 164356353 164356486 -117837178 + L2 LINE L2 2383 2523 -791 1825 163 111 47 chr1 164356528 164356748 -117836916 + LOR1b LTR ERV1 1 205 -256 2529 51 0 10 chr1 164356748 164357062 -117836602 - AluY SINE Alu 0 311 1 1825 163 111 47 chr1 164357062 164357245 -117836419 + LOR1b LTR ERV1 205 430 -31 2048 100 4 0 chr1 164357747 164358055 -117835609 + AluSg SINE Alu 1 309 0 183 307 93 13 chr1 164358995 164359070 -117834594 - MIR3 SINE MIR -40 168 88 319 86 0 35 chr1 164359498 164359556 -117834108 + (GGAA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chr1 164361378 164361399 -117832265 + AT_rich Low_complexity Low_complexity 1 21 0 827 312 149 17 chr1 164361486 164362022 -117831642 - L2 LINE L2 -343 2971 2365 259 323 24 47 chr1 164362957 164363084 -117830580 + MIR SINE MIR 29 152 -56 2037 126 27 0 chr1 164363274 164363568 -117830096 + AluSx SINE Alu 1 302 -10 705 257 16 22 chr1 164363754 164363937 -117829727 + MIR SINE MIR 53 234 -28 234 175 0 0 chr1 164364919 164364959 -117828705 + LTR16C LTR ERVL 405 444 -47 519 228 110 27 chr1 164364964 164364977 -117828687 - HAL1 LINE L1 -1313 1194 1184 2928 3 0 0 chr1 164364977 164365288 -117828376 - AluY SINE Alu 0 311 1 519 228 110 27 chr1 164365288 164365537 -117828127 - HAL1 LINE L1 -1323 1184 910 * 1500 237 132 44 chr1 164365530 164366015 -117827649 - HAL1 LINE L1 -1804 703 158 2086 110 0 24 chr1 164366015 164366330 -117827334 - AluSx SINE Alu 0 308 1 1500 237 132 44 chr1 164366330 164366412 -117827252 - HAL1 LINE L1 -2349 158 85 280 219 97 35 chr1 164366501 164366615 -117827049 + L1MC4a LINE L1 6044 6164 -1644 290 203 109 0 chr1 164366621 164366685 -117826979 - HAL1 LINE L1 -2436 71 1 2002 115 0 91 chr1 164366943 164367274 -117826390 + AluSx SINE Alu 1 301 -11 356 122 0 23 chr1 164367279 164367356 -117826308 + Alu SINE Alu 243 301 -1 621 225 35 47 chr1 164367364 164367601 -117826063 + L1MC/D LINE L1 5279 5513 -667 223 271 65 37 chr1 164367784 164367891 -117825773 - MIR SINE MIR -10 252 143 262 267 0 0 chr1 164368622 164368682 -117824982 + (TG)n Simple_repeat Simple_repeat 1 60 0 454 329 90 0 chr1 164368982 164369149 -117824515 + MIR SINE MIR 3 184 -78 252 376 32 0 chr1 164369212 164369337 -117824327 - MIR3 SINE MIR -66 142 14 358 357 28 7 chr1 164369856 164369999 -117823665 + MIR3 SINE MIR 30 175 -33 802 294 13 13 chr1 164370448 164370683 -117822981 + MIR SINE MIR 7 241 -21 858 173 45 17 chr1 164371412 164371591 -117822073 - MER53 DNA DNA -5 184 1 232 260 56 78 chr1 164373124 164373355 -117820309 - L1ME4a LINE L1 -65 6056 5831 312 184 29 0 chr1 164374241 164374317 -117819347 - MIR SINE MIR -74 188 111 1897 142 103 16 chr1 164374328 164374638 -117819026 + MER1B DNA MER1_type 1 337 0 1417 200 14 0 chr1 164374889 164375164 -117818500 - MLT1C LTR MaLR -2 465 187 251 298 81 19 chr1 164375398 164375559 -117818105 - L1ME4a LINE L1 -96 6025 5855 324 250 44 88 chr1 164375751 164375887 -117817777 - MIR3 SINE MIR -21 187 58 273 57 0 0 chr1 164376442 164376477 -117817187 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 300 227 168 25 chr1 164376547 164376666 -117816998 - Charlie7 DNA MER1_type -2472 140 5 418 298 62 26 chr1 164377055 164377228 -117816436 + MIR SINE MIR 8 191 -17 569 235 59 30 chr1 164377238 164377446 -117816218 - MIR SINE MIR -46 216 8 2101 117 3 29 chr1 164377556 164377872 -117815792 - AluSg SINE Alu -2 308 1 183 306 180 0 chr1 164378018 164378129 -117815535 + MIR3 SINE MIR 62 192 -16 528 261 75 6 chr1 164379100 164379261 -117814403 - MIR3 SINE MIR -8 200 29 21 0 0 0 chr1 164379304 164379325 -117814339 + AT_rich Low_complexity Low_complexity 1 21 0 639 245 101 63 chr1 164379411 164379647 -117814017 - MIR SINE MIR -10 252 4 1249 256 83 34 chr1 164379725 164380314 -117813350 - L2 LINE L2 0 3313 2699 2344 119 9 0 chr1 164380325 164380669 -117812995 - L1PB3 LINE L1 -2 6152 5806 541 284 114 53 chr1 164380773 164381132 -117812532 - L2 LINE L2 -1151 2163 1783 250 197 70 14 chr1 164381788 164381859 -117811805 + MIR SINE MIR 129 203 -59 434 133 133 0 chr1 164381920 164382003 -117811661 - MER85 DNA T2_type -45 94 1 419 265 61 44 chr1 164382840 164383021 -117810643 - MIR SINE MIR -66 196 13 5701 103 17 0 chr1 164383260 164384230 -117809434 - L1PA11 LINE L1 -103 6071 5089 340 341 209 11 chr1 164384837 164385286 -117808378 + L2 LINE L2 2079 2616 -698 277 351 58 50 chr1 164385850 164385992 -117807672 - L2 LINE L2 -38 3275 3136 2571 44 0 0 chr1 164385992 164386287 -117807377 + AluY SINE Alu 1 295 -16 277 351 58 50 chr1 164386287 164386523 -117807141 - L2 LINE L2 -177 3136 2894 226 352 19 19 chr1 164386621 164386726 -117806938 - L2 LINE L2 -541 2773 2669 222 396 44 0 chr1 164386746 164386837 -117806827 + L2 LINE L2 3128 3222 -50 1427 123 0 15 chr1 164386869 164387073 -117806591 + AluSg/x SINE Alu 86 286 -26 425 263 113 12 chr1 164387115 164387275 -117806389 + MIR3 SINE MIR 30 205 -3 194 273 78 39 chr1 164388192 164388269 -117805395 + L2 LINE L2 1697 1776 -1538 7508 171 36 11 chr1 164388494 164391063 -117802601 - L1PA15 LINE L1 -231 6585 1420 1021 220 34 60 chr1 164391070 164391487 -117802177 - MSTB2 LTR MaLR 0 457 1 213 381 45 13 chr1 164391525 164391680 -117801984 - L2 LINE L2 -301 2971 2812 1950 98 79 0 chr1 164391762 164392039 -117801625 + AluSg SINE Alu 1 299 -11 284 186 77 0 chr1 164393209 164393272 -117800392 + MIR SINE MIR 34 100 -108 685 179 31 107 chr1 164394583 164394779 -117798885 + MIR SINE MIR 7 187 -75 193 208 62 0 chr1 164395159 164395207 -117798457 + L2 LINE L2 2932 2982 -290 225 83 0 0 chr1 164396972 164397008 -117796656 + (A)n Simple_repeat Simple_repeat 1 36 0 680 254 90 33 chr1 164397773 164398017 -117795647 + MIR SINE MIR 5 262 0 542 271 8 8 chr1 164398744 164398866 -117794798 + L2 LINE L2 3188 3309 -4 440 240 116 16 chr1 164398999 164399120 -117794544 - L2 LINE L2 -6 3307 3175 217 250 29 22 chr1 164399525 164399534 -117794130 + (TA)n Simple_repeat Simple_repeat 2 9 -129 1896 158 0 7 chr1 164399534 164399825 -117793839 + AluJo SINE Alu 1 289 -23 217 250 29 22 chr1 164399825 164399951 -117793713 + (TA)n Simple_repeat Simple_repeat 9 138 0 21 0 0 0 chr1 164400520 164400541 -117793123 + AT_rich Low_complexity Low_complexity 1 21 0 2122 130 0 3 chr1 164401012 164401312 -117792352 + AluSg SINE Alu 1 299 -11 1697 170 0 21 chr1 164401815 164402135 -117791529 + AluSx SINE Alu 1 314 0 1042 291 105 29 chr1 164402244 164402721 -117790943 + LTR33 LTR ERVL 1 513 -8 2417 67 0 19 chr1 164403992 164404307 -117789357 - AluSc SINE Alu 0 309 1 1932 157 3 22 chr1 164404375 164404694 -117788970 - AluSq SINE Alu 0 313 1 5056 123 49 6 chr1 164404718 164405548 -117788116 - L1PA16 LINE L1 -8 6158 5293 225 236 18 0 chr1 164405923 164405978 -117787686 + (TA)n Simple_repeat Simple_repeat 1 56 0 1493 166 29 16 chr1 164406050 164406357 -117787307 - L1MA5 LINE L1 -910 5236 4926 * 5361 152 56 6 chr1 164406347 164406837 -117786827 + L1MA5 LINE L1 5255 5719 -581 357 24 0 0 chr1 164406837 164406879 -117786785 + (CA)n Simple_repeat Simple_repeat 2 43 0 5361 152 56 6 chr1 164406879 164407384 -117786280 + L1MA5 LINE L1 5719 6300 0 634 263 76 27 chr1 164408813 164409037 -117784627 - MIR SINE MIR 0 262 28 24 0 0 0 chr1 164409204 164409228 -117784436 + AT_rich Low_complexity Low_complexity 1 24 0 1951 136 51 20 chr1 164410291 164410644 -117783020 + MLT1A1 LTR MaLR 2 365 0 624 197 7 51 chr1 164411435 164411572 -117782092 + MER5B DNA MER1_type 1 131 -47 472 178 67 61 chr1 164411935 164412115 -117781549 + L1ME4a LINE L1 5764 5944 -177 2105 137 0 0 chr1 164412339 164412639 -117781025 + AluSg SINE Alu 1 300 -10 569 267 175 5 chr1 164412685 164412891 -117780773 - MIR SINE MIR -15 247 7 988 164 17 69 chr1 164414271 164414502 -117779162 + MER20 DNA MER1_type 1 219 0 655 243 22 22 chr1 164414518 164414703 -117778961 + MIR SINE MIR 68 252 -10 24 53 0 0 chr1 164414911 164414949 -117778715 + AT_rich Low_complexity Low_complexity 1 38 0 506 296 74 67 chr1 164415453 164415723 -117777941 + L2 LINE L2 2997 3268 -4 2168 104 0 7 chr1 164416876 164417175 -117776489 + AluSx SINE Alu 1 297 -15 4659 89 2 3 chr1 164417382 164418014 -117775650 + LTR10E LTR ERV1 1 631 -2 257 265 0 29 chr1 164418132 164418200 -117775464 + L2 LINE L2 3205 3270 -2 301 264 35 11 chr1 164418321 164418408 -117775256 - L2 LINE L2 -2 3311 3223 3969 120 32 19 chr1 164418415 164419042 -117774622 - MER41B LTR ERV1 0 635 1 1843 142 6 54 chr1 164419466 164419783 -117773881 - AluJb SINE Alu -10 302 1 4111 217 41 16 chr1 164421412 164422502 -117771162 + L1MB7 LINE L1 3284 4401 -1745 * 4463 159 18 21 chr1 164422499 164423710 -117769954 + L1PA16 LINE L1 4826 6029 -137 278 95 94 9 chr1 164423719 164423772 -117769892 + L1PA16 LINE L1 6107 6157 -7 3836 180 51 50 chr1 164423777 164424649 -117769015 + L1MB7 LINE L1 4400 5279 -905 414 0 0 0 chr1 164424649 164424695 -117768969 + (CA)n Simple_repeat Simple_repeat 2 47 0 3836 180 51 50 chr1 164424695 164425525 -117768139 + L1MB7 LINE L1 5279 6107 -77 1354 185 99 30 chr1 164425523 164425568 -117768096 + L1MC1 LINE L1 4465 4505 -1641 * 2162 125 0 3 chr1 164425568 164425880 -117767784 + AluSx SINE Alu 1 311 -1 1354 185 99 30 chr1 164425880 164426196 -117767468 + L1MC1 LINE L1 4505 4851 -1295 * 5399 156 38 9 chr1 164426194 164427161 -117766503 + L1MC1 LINE L1 5338 6332 -1 2467 75 0 0 chr1 164427709 164428017 -117765647 - AluY SINE Alu -2 309 2 645 271 100 78 chr1 164428216 164428530 -117765134 - L1MEc LINE L1 -5013 1383 1078 2227 109 0 3 chr1 164428530 164428824 -117764840 - AluSg SINE Alu -17 293 1 645 271 100 78 chr1 164428824 164429218 -117764446 - L1MEc LINE L1 -5318 1078 659 2202 140 125 13 chr1 164429541 164429926 -117763738 + MSTA LTR MaLR 1 428 0 287 193 11 0 chr1 164430118 164430135 -117763529 + (TA)n Simple_repeat Simple_repeat 2 17 -73 2474 135 28 0 chr1 164430135 164430490 -117763174 - MER47A DNA MER2_type -1 365 1 287 193 11 0 chr1 164430490 164430501 -117763163 + (TA)n Simple_repeat Simple_repeat 17 26 -64 1582 196 101 9 chr1 164430501 164430818 -117762846 - MER7A DNA MER2_type -1 345 2 287 193 11 0 chr1 164430818 164430876 -117762788 + (TA)n Simple_repeat Simple_repeat 26 90 0 271 339 89 31 chr1 164431447 164431739 -117761925 - L2 LINE L2 -1402 1912 1604 2139 106 3 20 chr1 164431850 164432144 -117761520 + AluSx SINE Alu 1 298 -14 414 0 0 0 chr1 164432144 164432190 -117761474 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 195 42 0 0 chr1 164432190 164432214 -117761450 + (GA)n Simple_repeat Simple_repeat 2 25 0 182 333 83 21 chr1 164432232 164432376 -117761288 - L2 LINE L2 -814 2500 2348 287 217 33 0 chr1 164434411 164434471 -117759193 + MIR3 SINE MIR 98 159 -49 24 53 0 0 chr1 164434809 164434847 -117758817 + AT_rich Low_complexity Low_complexity 1 38 0 261 57 0 0 chr1 164435594 164435629 -117758035 + (TC)n Simple_repeat Simple_repeat 1 35 0 1807 186 0 16 chr1 164435728 164436045 -117757619 - AluJo SINE Alu 0 312 1 1998 126 7 19 chr1 164436650 164436960 -117756704 + AluSx SINE Alu 1 306 -6 3293 215 79 24 chr1 164437410 164438717 -117754947 - L1ME1 LINE L1 -5 6230 4859 954 114 0 0 chr1 164438721 164438852 -117754812 - AluSg/x SINE Alu -6 304 174 1259 236 20 3 chr1 164438853 164439149 -117754515 - L1ME1 LINE L1 -1353 4862 4562 285 279 0 0 chr1 164439150 164439211 -117754453 + MER20 DNA MER1_type 2 62 -157 279 0 0 0 chr1 164439874 164439905 -117753759 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2320 100 0 0 chr1 164440037 164440337 -117753327 + AluSc SINE Alu 3 302 -7 1817 158 19 9 chr1 164440361 164440683 -117752981 - L1MB3 LINE L1 -33 6150 5826 829 191 117 11 chr1 164440689 164440877 -117752787 - AluJo SINE Alu -18 294 87 2219 176 18 20 chr1 164440889 164441327 -117752337 - L1MB3 LINE L1 -363 5820 5384 4867 240 86 34 chr1 164441330 164441529 -117752135 - L1ME1 LINE L1 -4578 1818 1631 1018 211 17 0 chr1 164441529 164441704 -117751960 - MER45A DNA AcHobo 0 178 1 4867 240 86 34 chr1 164441704 164441772 -117751892 - L1ME1 LINE L1 -4765 1631 1568 2298 101 3 0 chr1 164441772 164442069 -117751595 - AluSp SINE Alu -15 298 1 4867 240 86 34 chr1 164442069 164442592 -117751072 - L1ME1 LINE L1 -4828 1568 1074 1939 100 66 24 chr1 164442592 164442881 -117750783 - AluSq SINE Alu -12 301 1 4867 240 86 34 chr1 164442881 164443782 -117749882 - L1ME1 LINE L1 -5322 1074 37 621 254 23 23 chr1 164443806 164443979 -117749685 + MER5B DNA MER1_type 2 174 -4 294 301 61 113 chr1 164444062 164444523 -117749141 - L2 LINE L2 -535 2779 2343 2480 65 3 3 chr1 164444685 164444994 -117748670 - AluY SINE Alu -2 309 1 541 300 109 9 chr1 164445202 164445272 -117748392 + MIR SINE MIR 2 64 -198 3048 152 21 6 chr1 164445272 164445784 -117747880 - L1MC1 LINE L1 0 6333 5814 541 300 109 9 chr1 164445784 164445933 -117747731 + MIR SINE MIR 64 243 -19 829 288 74 82 chr1 164445956 164446470 -117747194 - L2 LINE L2 0 3313 2804 245 280 17 25 chr1 164446544 164446662 -117747002 + GA-rich Low_complexity Low_complexity 2 118 0 406 300 91 38 chr1 164446682 164447022 -117746642 - L2 LINE L2 -1354 1960 1603 228 94 0 0 chr1 164447801 164447833 -117745831 - L1MB7 LINE L1 -1494 4652 4621 * 1907 175 39 13 chr1 164447831 164448213 -117745451 + L1MB7 LINE L1 4635 5026 -1120 183 42 0 0 chr1 164448562 164448586 -117745078 + (CAG)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr1 164449293 164449328 -117744336 + AT_rich Low_complexity Low_complexity 1 35 0 2140 101 25 0 chr1 164450381 164450667 -117742997 - AluSg SINE Alu -17 293 1 189 0 0 0 chr1 164451684 164451705 -117741959 + (T)n Simple_repeat Simple_repeat 1 21 0 212 179 0 0 chr1 164452020 164452059 -117741605 + A-rich Low_complexity Low_complexity 1 39 0 4534 167 52 27 chr1 164452111 164453222 -117740442 + L1MB7 LINE L1 5052 6184 0 25 23 0 23 chr1 164453888 164453907 -117739757 + AT_rich Low_complexity Low_complexity 1 19 -23 2295 96 10 13 chr1 164453907 164454219 -117739445 - AluSq SINE Alu -2 311 1 25 23 0 23 chr1 164454219 164454242 -117739422 + AT_rich Low_complexity Low_complexity 19 42 0 5567 129 8 38 chr1 164454242 164454922 -117738742 - L1PA16 LINE L1 -9 6157 5458 2293 121 0 0 chr1 164454922 164455228 -117738436 - AluSx SINE Alu -6 306 1 5567 129 8 38 chr1 164455228 164455404 -117738260 - L1PA16 LINE L1 -708 5458 5323 1982 142 7 0 chr1 164455404 164455707 -117737957 - AluSx SINE Alu 0 305 1 5567 129 8 38 chr1 164455707 164455807 -117737857 - L1PA16 LINE L1 -843 5323 5222 4144 223 29 26 chr1 164455937 164456829 -117736835 + MLT1A1-int LTR MaLR 841 1735 0 1673 184 38 32 chr1 164456829 164457176 -117736488 + MLT1A1 LTR MaLR 1 349 -16 1048 151 14 58 chr1 164457383 164457633 -117736031 + MLT2A2 LTR ERVL 287 453 0 3951 216 38 23 chr1 164457633 164458449 -117735215 - L1M2 LINE L1 -6020 829 2 1035 188 0 0 chr1 164460717 164460887 -117732777 - FRAM SINE Alu -1 175 6 463 262 99 54 chr1 164460907 164461201 -117732463 + L1ME3 LINE L1 5589 5915 -247 218 240 115 39 chr1 164461470 164461574 -117732090 - MIR SINE MIR -2 260 149 189 305 40 93 chr1 164462213 164462364 -117731300 - L2 LINE L2 -2833 481 339 596 300 124 63 chr1 164462641 164463284 -117730380 - L2 LINE L2 -3 3269 2572 209 205 0 0 chr1 164463842 164463881 -117729783 + T-rich Low_complexity Low_complexity 4 42 0 262 299 0 0 chr1 164464027 164464094 -117729570 + tRNA-Ile-ATT tRNA tRNA 7 73 -4 225 356 137 11 chr1 164465041 164465581 -117728083 + L2 LINE L2 1707 2314 -1000 303 233 0 35 chr1 164465975 164466061 -117727603 + MIR SINE MIR 126 208 -54 5123 79 7 0 chr1 164466513 164467531 -117726133 - L1PA7 LINE L1 -428 5726 4705 3291 60 2 8 chr1 164467531 164467928 -117725736 + L1PA7 LINE L1 5759 6154 0 594 312 98 46 chr1 164468901 164469464 -117724200 + L2 LINE L2 2636 3233 -39 440 259 7 82 chr1 164469468 164469500 -117724164 - MIR3 SINE MIR -19 189 156 203 30 0 61 chr1 164469500 164469533 -117724131 + (CTAAT)n Simple_repeat Simple_repeat 2 32 0 440 259 7 82 chr1 164469533 164469647 -117724017 - MIR3 SINE MIR -52 156 54 203 152 0 0 chr1 164470611 164470644 -117723020 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1141 229 51 81 chr1 164471655 164471929 -117721735 - L1 LINE L1 -3675 3890 3609 1902 159 34 0 chr1 164471929 164472225 -117721439 - AluSx SINE Alu -6 306 1 1141 229 51 81 chr1 164472225 164472876 -117720788 - L1 LINE L1 -3956 3609 2978 2096 83 4 0 chr1 164472993 164473284 -117720380 + AluY SINE Alu 19 310 0 2339 222 32 14 chr1 164474540 164475387 -117718277 + L1ME LINE L1 4960 5814 -352 796 217 13 58 chr1 164475514 164475740 -117717924 + AluJb SINE Alu 94 309 -3 1236 141 0 5 chr1 164475787 164475978 -117717686 + AluSg/x SINE Alu 121 310 -2 4572 183 11 19 chr1 164475986 164477109 -117716555 + L1MB2 LINE L1 5067 6168 -3 645 200 36 36 chr1 164477205 164477370 -117716294 + MIR SINE MIR 68 232 -30 2469 84 0 0 chr1 164477458 164477769 -117715895 + AluY SINE Alu 1 311 0 1726 138 74 0 chr1 164481882 164482194 -117711470 - L1PA13 LINE L1 -5 6158 5824 37 23 0 0 chr1 164483281 164483325 -117710339 + AT_rich Low_complexity Low_complexity 1 44 0 2211 85 3 24 chr1 164483328 164483623 -117710041 - AluSc SINE Alu -20 289 1 280 119 0 0 chr1 164483623 164483665 -117709999 + MER3 DNA MER1_type 154 195 -14 261 172 78 0 chr1 164483755 164483819 -117709845 - L1ME LINE L1 -669 5452 5384 919 284 82 7 chr1 164484188 164484669 -117708995 + L1ME2 LINE L1 5233 5758 -404 2894 183 81 18 chr1 164484806 164485462 -117708202 + MLT-int LTR MaLR 1 697 -1038 9411 157 28 5 chr1 164485575 164487247 -117706417 - L1M2 LINE L1 -4310 2539 830 977 108 38 0 chr1 164487251 164487408 -117706256 + MLT2A2 LTR ERVL 1 163 -290 300 200 0 0 chr1 164488041 164488106 -117705558 + (CA)n Simple_repeat Simple_repeat 2 66 0 324 252 139 9 chr1 164488798 164488913 -117704751 - MIR SINE MIR -125 137 8 423 0 0 0 chr1 164488936 164488983 -117704681 + (TG)n Simple_repeat Simple_repeat 2 48 0 303 282 87 40 chr1 164489463 164489612 -117704052 - MIR SINE MIR -50 212 57 * 434 239 88 18 chr1 164489607 164489720 -117703944 + L2 LINE L2 3152 3272 0 278 261 34 45 chr1 164490855 164490943 -117702721 + MER5A DNA MER1_type 100 186 -3 2990 257 67 56 chr1 164491286 164492732 -117700932 - L1M4c LINE L1 -4517 1374 28 222 128 0 0 chr1 164493565 164493604 -117700060 + (TG)n Simple_repeat Simple_repeat 1 39 0 343 119 17 0 chr1 164494319 164494378 -117699286 + MER53 DNA DNA 5 64 -125 246 188 62 0 chr1 164494382 164494446 -117699218 + L1MD2 LINE L1 6285 6352 -7 194 270 90 67 chr1 164494784 164494873 -117698791 - MIR SINE MIR -155 107 17 333 285 23 46 chr1 164495453 164495583 -117698081 - MIR3 SINE MIR -70 138 12 419 234 0 108 chr1 164496032 164496265 -117697399 + L1ME2 LINE L1 5926 6119 -45 948 89 7 0 chr1 164496278 164496413 -117697251 - FRAM SINE Alu 0 176 41 397 322 77 38 chr1 164496423 164496814 -117696850 + L1M4 LINE L1 4754 5153 -993 2407 273 62 31 chr1 164496881 164498228 -117695436 - L1M4 LINE L1 -1846 4300 2913 1722 220 135 14 chr1 164498714 164499277 -117694387 - L1ME2 LINE L1 -10 6154 5524 232 219 78 16 chr1 164500244 164500308 -117693356 - MIR3 SINE MIR -7 201 134 414 284 31 6 chr1 164500903 164501065 -117692599 + LTR33 LTR ERVL 29 194 -327 428 329 48 7 chr1 164501780 164501926 -117691738 + MIR3 SINE MIR 18 169 -39 4062 176 44 20 chr1 164502008 164503243 -117690421 - L1MB8 LINE L1 -6 6172 4903 541 251 175 12 chr1 164503244 164503415 -117690249 - MIR SINE MIR -49 213 15 198 118 0 0 chr1 164503429 164503463 -117690201 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 243 286 200 0 chr1 164504307 164504377 -117689287 + L2 LINE L2 3134 3217 -55 216 298 88 41 chr1 164504811 164504954 -117688710 - MIR SINE MIR -62 146 7 521 254 52 23 chr1 164505265 164505438 -117688226 + HERVL LTR ERVL 1826 2003 -3761 279 284 0 0 chr1 164505457 164505531 -117688133 + LTR16B LTR ERVL 1 74 -390 290 264 24 40 chr1 164505838 164505963 -117687701 + HERVL LTR ERVL 1760 1882 -3772 1729 221 78 30 chr1 164506219 164506841 -117686823 - MLT1E3 LTR MaLR 0 624 1 268 331 88 23 chr1 164506946 164507209 -117686455 + L1MEc LINE L1 129 408 -5988 291 143 0 36 chr1 164507741 164507797 -117685867 + L1ME LINE L1 2687 2740 -3406 249 247 11 0 chr1 164507829 164507918 -117685746 + L1MA10 LINE L1 6241 6330 -4 29 0 0 0 chr1 164507961 164507990 -117685674 + AT_rich Low_complexity Low_complexity 1 29 0 1850 275 21 41 chr1 164507991 164508574 -117685090 + L1ME LINE L1 3864 4420 -1726 1966 129 11 0 chr1 164508574 164508873 -117684791 + AluY SINE Alu 1 302 0 1850 275 21 41 chr1 164508873 164509302 -117684362 + L1ME LINE L1 4420 4856 -1290 189 0 0 0 chr1 164509477 164509498 -117684166 + (TCTA)n Simple_repeat Simple_repeat 4 24 0 1066 231 44 9 chr1 164509509 164509851 -117683813 + L1ME LINE L1 5299 5652 -512 2211 86 0 3 chr1 164509878 164510243 -117683421 - PABL_A LTR ERV1 0 660 195 2256 97 7 7 chr1 164511801 164512109 -117681555 - AluY SINE Alu -3 308 1 302 338 35 61 chr1 164512154 164512382 -117681282 - HAL1b LINE L1 -606 742 521 265 308 111 111 chr1 164513770 164514361 -117679303 + L2 LINE L2 2662 3272 0 301 265 78 20 chr1 164514592 164514694 -117678970 - L1MC4 LINE L1 -1321 6721 6614 274 302 28 93 chr1 164514723 164514938 -117678726 - L2 LINE L2 -2775 539 339 626 305 123 61 chr1 164515217 164515860 -117677804 - L2 LINE L2 -3 3269 2572 1005 211 97 26 chr1 164517180 164517563 -117676101 - L1ME3 LINE L1 -3 6159 5750 556 280 113 57 chr1 164517754 164518008 -117675656 + LTR33 LTR ERVL 17 255 -266 2278 121 0 21 chr1 164518008 164518348 -117675316 - MER1B DNA MER1_type 0 337 5 556 280 113 57 chr1 164518348 164518571 -117675093 + LTR33 LTR ERVL 255 521 0 541 209 129 9 chr1 164524683 164524897 -117668767 - MER106B DNA MER1_type 0 1059 2 307 375 47 0 chr1 164527271 164527399 -117666265 + L2 LINE L2 3133 3266 -6 504 215 127 38 chr1 164527483 164527641 -117666023 - MIR SINE MIR -83 179 8 224 220 0 28 chr1 164529927 164530036 -117663628 + A-rich Low_complexity Low_complexity 1 106 0 311 269 0 0 chr1 164530061 164530154 -117663510 + A-rich Low_complexity Low_complexity 1 93 0 300 186 62 71 chr1 164530327 164530440 -117663224 + MIR SINE MIR 94 205 -57 700 161 0 65 chr1 164534136 164534304 -117659360 + L1MB3 LINE L1 6026 6182 -1 384 233 0 12 chr1 164535084 164535170 -117658494 - MIR SINE MIR -90 172 88 3329 142 73 30 chr1 164535218 164535794 -117657870 + MER7C DNA MER2_type 1 601 -1 2126 135 0 0 chr1 164536115 164536403 -117657261 + AluSx SINE Alu 1 288 -24 2434 72 0 31 chr1 164536435 164536755 -117656909 + AluY SINE Alu 1 310 -1 371 312 71 14 chr1 164536872 164537154 -117656510 + L1M4 LINE L1 4405 4702 -1444 21 57 0 0 chr1 164537281 164537316 -117656348 + AT_rich Low_complexity Low_complexity 1 35 0 327 239 119 40 chr1 164537355 164537531 -117656133 + L1M4 LINE L1 5041 5230 -916 354 138 0 0 chr1 164537594 164537652 -117656012 + (TA)n Simple_repeat Simple_repeat 2 59 0 214 200 0 0 chr1 164538738 164538778 -117654886 + L2 LINE L2 3258 3297 -16 279 295 44 105 chr1 164540268 164540563 -117653101 + L2 LINE L2 2827 3103 -169 371 272 170 24 chr1 164540885 164541091 -117652573 - MIR SINE MIR -5 257 22 551 216 31 2 chr1 164541812 164541943 -117651721 + MER33 DNA MER1_type 1 122 -88 349 145 4 33 chr1 164541943 164542198 -117651466 + AluJb SINE Alu 1 298 -4 * 805 164 53 39 chr1 164542197 164542404 -117651260 + MER33 DNA MER1_type 114 323 -1 349 271 72 107 chr1 164545505 164546047 -117647617 - HAL1b LINE L1 -443 905 383 283 356 180 22 chr1 164546944 164547211 -117646453 + L2 LINE L2 2662 2970 -344 563 225 54 0 chr1 164547786 164547915 -117645749 + MIR3 SINE MIR 54 189 -19 494 297 115 58 chr1 164547919 164548283 -117645381 - L2 LINE L2 -39 3233 2849 244 279 15 118 chr1 164549308 164549444 -117644220 + MIR SINE MIR 17 138 -70 299 286 116 18 chr1 164550039 164550151 -117643513 + MIR SINE MIR 17 139 -123 340 219 0 14 chr1 164550661 164550807 -117642857 + CT-rich Low_complexity Low_complexity 2 145 0 301 260 8 24 chr1 164550810 164550937 -117642727 + (CTCA)n Simple_repeat Simple_repeat 2 126 0 613 168 235 0 chr1 164551119 164551238 -117642426 - AluJo/FRAM SINE Alu -10 302 156 485 209 11 0 chr1 164551233 164551324 -117642340 - AluS SINE Alu -220 92 1 * 917 186 11 17 chr1 164552541 164552718 -117640946 - L1MD1 LINE L1 -5 6237 6062 445 131 182 0 chr1 164554230 164554329 -117639335 - MER53 DNA DNA -68 121 5 21 0 0 0 chr1 164555779 164555800 -117637864 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 164558252 164558287 -117635377 + AT_rich Low_complexity Low_complexity 1 35 0 468 77 0 0 chr1 164559660 164559725 -117633939 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 2367 83 3 7 chr1 164561555 164561855 -117631809 - AluSp SINE Alu -14 299 1 3682 140 2 19 chr1 164562113 164562649 -117631015 + MER1A DNA MER1_type 1 527 0 1748 177 3 13 chr1 164563433 164563738 -117629926 + AluJb SINE Alu 1 302 -10 583 281 97 22 chr1 164564493 164564721 -117628943 - MIR SINE MIR 0 262 18 2443 79 3 0 chr1 164565200 164565505 -117628159 + AluY SINE Alu 1 306 -5 232 181 20 49 chr1 164565561 164565622 -117628042 - MIR SINE MIR -108 100 54 2575 220 69 10 chr1 164566750 164567691 -117625973 - L1ME1 LINE L1 -231 6004 5011 2224 257 74 45 chr1 164567754 164568719 -117624945 - L1ME1 LINE L1 -1894 4321 3329 4004 252 68 55 chr1 164568726 164570121 -117623543 - L1ME1 LINE L1 -3456 2759 1370 2303 93 3 0 chr1 164570121 164570422 -117623242 - AluY SINE Alu -9 302 1 4004 252 68 55 chr1 164570422 164571385 -117622279 - L1ME1 LINE L1 -4845 1370 421 292 286 86 76 chr1 164571480 164571580 -117622084 - L2 LINE L2 -44 3228 3127 1532 114 14 0 chr1 164571580 164571800 -117621864 + AluSg/x SINE Alu 76 298 -14 193 143 20 20 chr1 164572460 164572509 -117621155 + GA-rich Low_complexity Low_complexity 2 50 0 1042 225 12 16 chr1 164574509 164574735 -117618929 + MER6 DNA MER2_type -15 794 -71 3180 161 29 5 chr1 164574738 164574806 -117618858 + MER6 DNA MER2_type 298 363 -502 2377 71 0 3 chr1 164574806 164575103 -117618561 + AluY SINE Alu 1 296 -15 3180 161 29 5 chr1 164575103 164575586 -117618078 + MER6 DNA MER2_type 363 862 -3 2076 176 89 68 chr1 164577138 164577668 -117615996 + LTR55 LTR ERV 1 541 -7 213 257 219 0 chr1 164579285 164579390 -117614274 + L3 LINE CR1 1191 1318 -259 1034 185 6 6 chr1 164579483 164579661 -117614003 - MSTB1 LTR MaLR 0 432 255 601 121 11 0 chr1 164579662 164579753 -117613911 - MSTB1 LTR MaLR -340 92 1 352 318 156 6 chr1 164579863 164580036 -117613628 - MLT1J2 LTR MaLR -182 264 66 1193 176 45 0 chr1 164580204 164580425 -117613239 - L1M4c LINE L1 -4775 1609 1379 369 0 0 0 chr1 164581208 164581249 -117612415 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 753 206 6 24 chr1 164581249 164581419 -117612245 - AluSp SINE Alu -10 303 137 584 313 41 41 chr1 164631609 164632050 -117561614 - L1MC4 LINE L1 -413 7629 7189 273 118 0 0 chr1 164632412 164632463 -117561201 + (TG)n Simple_repeat Simple_repeat 1 51 0 682 0 0 0 chr1 164634333 164634409 -117559255 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 1031 144 0 58 chr1 164634872 164635060 -117558604 + AluSg/x SINE Alu 134 310 -2 2015 169 0 15 chr1 164635292 164635635 -117558029 - MER72 LTR ERV1 -221 501 164 2654 46 0 0 chr1 164635642 164635946 -117557718 - AluY SINE Alu -5 306 3 243 125 0 0 chr1 164635997 164636037 -117557627 + (C)n Simple_repeat Simple_repeat 1 40 0 325 241 9 27 chr1 164636077 164636189 -117557475 + C-rich Low_complexity Low_complexity 3 112 0 272 312 21 21 chr1 164636538 164636679 -117556985 + L1ME2 LINE L1 4724 4864 -1282 247 313 0 0 chr1 164636680 164636744 -117556920 + (TA)n Simple_repeat Simple_repeat 2 65 0 236 292 0 0 chr1 164636773 164636869 -117556795 - L1MC4 LINE L1 -1333 6709 6614 264 77 0 0 chr1 164636875 164636914 -117556750 + (CA)n Simple_repeat Simple_repeat 2 40 0 1957 247 101 41 chr1 164636934 164637000 -117556664 + L1ME2 LINE L1 5299 5360 -804 2833 3 0 0 chr1 164637000 164637298 -117556366 + AluYa8 SINE Alu 1 298 -12 1957 247 101 41 chr1 164637298 164637606 -117556058 + L1ME2 LINE L1 5360 5648 -516 4805 85 18 17 chr1 164637606 164638264 -117555400 - PABL_A LTR ERV1 0 660 2 1957 247 101 41 chr1 164638264 164638693 -117554971 + L1ME2 LINE L1 5648 6151 -13 917 283 117 8 chr1 164638718 164639198 -117554466 + L1ME2 LINE L1 4329 4860 -1286 566 182 35 6 chr1 164640013 164640183 -117553481 + (TA)n Simple_repeat Simple_repeat 1 175 0 1554 101 10 0 chr1 164640209 164640418 -117553246 - L1PA6 LINE L1 -35 6119 5909 878 270 123 32 chr1 164640572 164641379 -117552285 + L1ME2 LINE L1 5007 5892 -272 2421 54 3 54 chr1 164641379 164641696 -117551968 + AluY SINE Alu 1 301 -10 878 270 123 32 chr1 164641696 164641731 -117551933 + L1ME2 LINE L1 5892 5922 -242 1782 165 10 0 chr1 164643056 164643359 -117550305 + AluSg SINE Alu 1 306 -4 385 286 7 14 chr1 164643528 164643675 -117549989 + MIR SINE MIR 96 241 -21 347 200 42 42 chr1 164644678 164644773 -117548891 - L1MB5 LINE L1 -9 6165 6071 366 85 0 0 chr1 164646015 164646074 -117547590 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 323 121 17 0 chr1 164647573 164647631 -117546033 + CT-rich Low_complexity Low_complexity 1 59 0 483 33 0 0 chr1 164649138 164649199 -117544465 + (TG)n Simple_repeat Simple_repeat 2 62 0 266 163 38 12 chr1 164650291 164650371 -117543293 + GA-rich Low_complexity Low_complexity 2 83 0 414 53 0 0 chr1 164650777 164650834 -117542830 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 305 125 18 0 chr1 164652339 164652395 -117541269 + CT-rich Low_complexity Low_complexity 1 57 0 333 0 0 0 chr1 164653896 164653933 -117539731 + (TG)n Simple_repeat Simple_repeat 2 38 0 305 125 18 0 chr1 164655450 164655506 -117538158 + CT-rich Low_complexity Low_complexity 1 57 0 447 35 0 0 chr1 164656527 164656584 -117537080 + (TG)n Simple_repeat Simple_repeat 2 58 0 266 163 38 12 chr1 164657676 164657756 -117535908 + GA-rich Low_complexity Low_complexity 2 83 0 396 123 0 0 chr1 164658157 164658230 -117535434 + (TC)n Simple_repeat Simple_repeat 1 73 0 323 121 17 0 chr1 164659726 164659784 -117533880 + CT-rich Low_complexity Low_complexity 1 59 0 498 17 0 0 chr1 164661288 164661347 -117532317 + (TG)n Simple_repeat Simple_repeat 2 60 0 266 163 38 12 chr1 164662441 164662521 -117531143 + GA-rich Low_complexity Low_complexity 2 83 0 272 143 18 0 chr1 164662912 164662968 -117530696 + CT-rich Low_complexity Low_complexity 1 57 0 498 17 0 0 chr1 164664478 164664537 -117529127 + (TG)n Simple_repeat Simple_repeat 2 60 0 339 65 0 0 chr1 164665502 164665548 -117528116 + (GGA)n Simple_repeat Simple_repeat 2 47 0 27 0 0 0 chr1 164665910 164665937 -117527727 + GC_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr1 164666176 164666201 -117527463 + AT_rich Low_complexity Low_complexity 1 25 0 257 253 77 22 chr1 164666709 164666800 -117526864 + L2 LINE L2 3177 3272 0 4992 16 0 0 chr1 164667093 164667648 -117526016 + L1PA3 LINE L1 5597 6151 -4 240 167 379 0 chr1 164667694 164667760 -117525904 - MER31A LTR ERV1 -394 91 1 8842 172 49 48 chr1 164667766 164668589 -117525075 - MER31A-int LTR ERV1 -26 5853 5032 2124 100 3 7 chr1 164668589 164668879 -117524785 - AluSg SINE Alu -12 298 10 8842 172 49 48 chr1 164668879 164670584 -117523080 - MER31A-int LTR ERV1 -847 5032 3077 1414 175 124 97 chr1 164670636 164671062 -117522602 - MER31A-int LTR ERV1 -3422 1514 1064 1999 104 73 14 chr1 164671062 164671351 -117522313 + AluSx SINE Alu 1 306 -6 1414 175 124 97 chr1 164671351 164671535 -117522129 - MER31A-int LTR ERV1 -3872 1064 887 693 209 19 71 chr1 164671692 164671902 -117521762 - MER31A-int LTR ERV1 -4537 399 201 * 800 192 61 131 chr1 164671869 164672166 -117521498 - MER31A-int LTR ERV1 -4646 290 15 2708 138 56 7 chr1 164672213 164672675 -117520989 - MER31A LTR ERV1 0 485 1 2191 98 0 17 chr1 164672931 164673228 -117520436 - AluSq SINE Alu -21 292 1 2465 60 7 3 chr1 164673604 164673906 -117519758 + AluY SINE Alu 1 303 -8 343 343 59 38 chr1 164674397 164674686 -117518978 - HAL1 LINE L1 -836 1671 1377 22 0 0 0 chr1 164674886 164674908 -117518756 + AT_rich Low_complexity Low_complexity 1 22 0 6902 69 10 2 chr1 164675038 164676298 -117517366 - L1PA6 LINE L1 -2 6152 4890 210 169 0 52 chr1 164676600 164676635 -117517029 + (TA)n Simple_repeat Simple_repeat 1 36 -37 1314 207 13 4 chr1 164676635 164676872 -117516792 - MER8 DNA MER2_type 0 239 1 210 169 0 52 chr1 164676872 164676913 -117516751 + (TA)n Simple_repeat Simple_repeat 36 73 0 296 239 23 0 chr1 164676913 164677001 -117516663 - L1MC4 LINE L1 -1339 6703 6614 1804 195 5 42 chr1 164677007 164677412 -117516252 - MLT1B LTR MaLR 0 390 1 25 75 0 0 chr1 164677436 164677489 -117516175 + AT_rich Low_complexity Low_complexity 1 53 0 2021 133 20 0 chr1 164678111 164678405 -117515259 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 164678496 164678518 -117515146 + AT_rich Low_complexity Low_complexity 1 22 0 629 285 50 32 chr1 164678699 164678920 -117514744 + MIR SINE MIR 20 244 -18 327 338 96 44 chr1 164679070 164679726 -117513938 - L2 LINE L2 -823 2491 1802 27 0 0 0 chr1 164679728 164679755 -117513909 + AT_rich Low_complexity Low_complexity 1 27 0 942 107 0 0 chr1 164679855 164679986 -117513678 - AluSg/x SINE Alu -2 308 178 2233 97 3 0 chr1 164680622 164680910 -117512754 - AluSc SINE Alu -20 289 1 516 322 85 43 chr1 164681015 164681254 -117512410 + L1MC4a LINE L1 5348 5575 -2233 2923 116 20 7 chr1 164681254 164681710 -117511954 + L1PA16 LINE L1 5704 6165 -1 516 322 85 43 chr1 164681710 164682032 -117511632 + L1MC4a LINE L1 5575 5933 -1875 21 71 0 0 chr1 164682462 164682504 -117511160 + GC_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 164682539 164682564 -117511100 + GC_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 164685384 164685414 -117508250 + AT_rich Low_complexity Low_complexity 1 30 0 28 71 0 0 chr1 164686324 164686380 -117507284 + AT_rich Low_complexity Low_complexity 1 56 0 2236 169 3 6 chr1 164687056 164687422 -117506242 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1 164687758 164687781 -117505883 + AT_rich Low_complexity Low_complexity 1 23 0 1328 161 0 14 chr1 164688428 164688651 -117505013 - AluJo SINE Alu -7 305 86 2277 125 0 0 chr1 164689260 164689572 -117504092 - AluSx SINE Alu 0 312 1 560 271 23 23 chr1 164689752 164689929 -117503735 - LTR67 LTR ERVL -25 532 356 304 222 42 0 chr1 164690607 164690679 -117502985 - ERVL LTR ERVL -464 5300 5226 787 195 36 26 chr1 164690742 164691061 -117502603 - L1MC2 LINE L1 -2 6342 5921 1515 137 24 0 chr1 164691789 164692044 -117501620 - L1MC2 LINE L1 -365 5979 5719 1266 127 6 0 chr1 164692049 164692286 -117501378 - AluSg/x SINE Alu 0 367 130 1186 326 87 56 chr1 164692427 164693502 -117500162 - ERVL LTR ERVL -745 5019 3904 2180 145 0 0 chr1 164693502 164693813 -117499851 - AluSx SINE Alu -1 311 1 1186 326 87 56 chr1 164693813 164693903 -117499761 - ERVL LTR ERVL -1860 3904 3818 428 303 15 8 chr1 164693937 164694069 -117499595 - ERVL LTR ERVL -1945 3709 3577 2048 122 3 13 chr1 164694550 164694862 -117498802 + AluSg SINE Alu 1 309 -1 303 82 90 8 chr1 164695540 164695662 -117498002 + (TA)n Simple_repeat Simple_repeat 1 132 0 2247 97 3 0 chr1 164695662 164695951 -117497713 - AluSp SINE Alu -23 290 1 528 186 0 0 chr1 164696200 164696302 -117497362 - AluJb SINE Alu -3 309 208 1386 102 0 5 chr1 164696776 164696962 -117496702 - AluSp SINE Alu -11 302 118 219 282 16 3 chr1 164697430 164697549 -117496115 - MER5B DNA MER1_type -10 168 9 2240 74 10 45 chr1 164697586 164697895 -117495769 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr1 164698435 164698456 -117495208 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 164698779 164698804 -117494860 + AT_rich Low_complexity Low_complexity 1 25 0 492 284 135 47 chr1 164698881 164699310 -117494354 + L1ME4a LINE L1 5407 5873 -248 1270 298 82 50 chr1 164699323 164700386 -117493278 + L1MEd LINE L1 2 1098 -5021 811 302 37 31 chr1 164700488 164701027 -117492637 + L1M4 LINE L1 3447 3988 -2158 411 173 135 29 chr1 164701040 164701144 -117492520 - LTR33A LTR ERVL -24 499 385 36 0 0 0 chr1 164701144 164701180 -117492484 + AT_rich Low_complexity Low_complexity 1 36 0 333 309 21 0 chr1 164701883 164701980 -117491684 + MER81 DNA DNA 1 99 -15 929 129 11 11 chr1 164702559 164702737 -117490927 + CT-rich Low_complexity Low_complexity 3 180 0 284 26 0 26 chr1 164702740 164702778 -117490886 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 994 181 11 0 chr1 164702778 164702955 -117490709 - AluJo SINE Alu 0 312 134 467 225 150 17 chr1 164702991 164703111 -117490553 + MER5B DNA MER1_type 2 137 -41 2321 116 22 19 chr1 164703192 164703555 -117490109 - THE1B LTR MaLR 0 364 1 392 208 118 62 chr1 164703683 164703827 -117489837 + MER5B DNA MER1_type 22 173 -5 817 140 0 0 chr1 164704941 164705055 -117488609 - AluJo SINE Alu -183 129 16 23 0 0 0 chr1 164705138 164705161 -117488503 + AT_rich Low_complexity Low_complexity 1 23 0 257 270 123 62 chr1 164705577 164705940 -117487724 + L1ME4a LINE L1 5554 5960 -161 524 124 22 0 chr1 164705940 164706029 -117487635 - L1MA6 LINE L1 0 6300 6210 257 270 123 62 chr1 164706029 164706195 -117487469 + L1ME4a LINE L1 5960 6115 -6 1868 187 32 9 chr1 164707016 164707364 -117486300 - MLT1A1 LTR MaLR 0 365 10 368 324 117 18 chr1 164707680 164707902 -117485762 - MIR SINE MIR 0 262 19 7630 53 1 0 chr1 164708458 164710198 -117483466 + L1PA5 LINE L1 4409 6149 -5 751 163 118 26 chr1 164710270 164710423 -117483241 - FAM SINE Alu -8 167 1 235 143 0 0 chr1 164710496 164710538 -117483126 + L1ME LINE L1 5390 5431 -739 14248 128 33 85 chr1 164710748 164713613 -117480051 - Tigger2 DNA MER2_type -2 2716 2 1598 182 44 3 chr1 164713615 164713933 -117479731 + MER46B DNA MER2_type 23 228 -8 572 226 131 12 chr1 164716265 164716433 -117477231 + MER5A DNA MER1_type 2 189 0 2185 104 0 3 chr1 164718210 164718508 -117475156 - AluSq SINE Alu -16 297 1 1988 140 7 0 chr1 164720729 164721022 -117472642 - AluSx SINE Alu -17 295 1 1992 145 3 0 chr1 164721773 164722070 -117471594 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 164722080 164722103 -117471561 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr1 164724698 164724741 -117468923 + AT_rich Low_complexity Low_complexity 1 43 0 519 187 0 37 chr1 164725092 164725199 -117468465 - AluJo SINE Alu -176 136 34 338 355 16 9 chr1 164725664 164725801 -117467863 + MIR SINE MIR 4 139 -69 197 291 18 0 chr1 164726026 164726081 -117467583 - L2 LINE L2 -24 3248 3193 181 286 0 0 chr1 164726915 164726957 -117466707 + MIR3 SINE MIR 115 156 -52 1304 209 14 88 chr1 164727330 164727693 -117465971 - MLT1A2 LTR MaLR 0 374 39 408 276 5 99 chr1 164727860 164727988 -117465676 + LTR33 LTR ERVL 344 450 -71 2187 46 79 0 chr1 164727988 164728268 -117465396 + AluY SINE Alu 1 302 -9 408 276 5 99 chr1 164728268 164728331 -117465333 + LTR33 LTR ERVL 450 517 -4 871 168 7 0 chr1 164728359 164728502 -117465162 - MLT1A1 LTR MaLR 0 365 222 1391 159 22 44 chr1 164728503 164728773 -117464891 - AluJb SINE Alu -44 268 5 3084 139 114 34 chr1 164728832 164729421 -117464243 - MER4D LTR ERV1 -267 636 1 309 323 16 16 chr1 164730188 164730312 -117463352 + Charlie4 DNA MER1_type 1834 1957 -4 233 344 0 0 chr1 164730669 164730733 -117462931 + C-rich Low_complexity Low_complexity 3 66 0 254 353 25 8 chr1 164730827 164730949 -117462715 + CT-rich Low_complexity Low_complexity 2 125 0 225 322 33 0 chr1 164731054 164731144 -117462520 + C-rich Low_complexity Low_complexity 6 98 0 3164 125 116 35 chr1 164731252 164731828 -117461836 - MER4D LTR ERV1 -280 623 1 192 40 0 0 chr1 164732196 164732221 -117461443 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 247 329 103 14 chr1 164732306 164732452 -117461212 + MLT1L LTR MaLR 360 518 -97 327 318 16 16 chr1 164732994 164733120 -117460544 - Charlie4 DNA MER1_type -2 1959 1834 1387 164 27 23 chr1 164733866 164734129 -117459535 + AluJb SINE Alu 5 268 -44 885 126 0 0 chr1 164734130 164734257 -117459407 + MLT1A1 LTR MaLR 222 348 -17 1048 111 6 61 chr1 164734397 164734501 -117459163 - LTR24C LTR ERV1 -465 170 79 2174 107 3 7 chr1 164734501 164734810 -117458854 - AluSp SINE Alu -5 308 1 1048 111 6 61 chr1 164734810 164734885 -117458779 - LTR24C LTR ERV1 -556 79 1 1390 229 13 68 chr1 164735014 164735411 -117458253 + MLT1A2 LTR MaLR 5 374 0 440 280 11 70 chr1 164735415 164735540 -117458124 + LTR33 LTR ERVL 344 456 -65 2279 77 0 3 chr1 164735540 164735837 -117457827 + AluY SINE Alu 1 296 -15 440 280 11 70 chr1 164735837 164735897 -117457767 + LTR33 LTR ERVL 456 518 -3 907 167 0 0 chr1 164735925 164736069 -117457595 - MLT1A1 LTR MaLR 0 365 222 844 189 7 0 chr1 164736070 164736218 -117457446 - AluJb SINE Alu -44 268 120 252 0 0 0 chr1 164736218 164736246 -117457418 + (T)n Simple_repeat Simple_repeat 1 28 0 274 316 92 0 chr1 164736625 164736723 -117456941 + MIR SINE MIR 34 140 -122 2284 93 3 0 chr1 164736729 164737041 -117456623 + AluSq SINE Alu 1 313 0 1085 216 58 52 chr1 164737052 164737417 -117456247 - HAL1 LINE L1 -599 1908 1542 1452 109 0 23 chr1 164737417 164737637 -117456027 - AluSx SINE Alu -19 293 79 1542 269 13 36 chr1 164737641 164738090 -117455574 + LTR2 LTR ERV1 11 449 0 537 155 0 0 chr1 164738090 164738174 -117455490 - AluSx SINE Alu -227 85 2 542 235 124 5 chr1 164738206 164738417 -117455247 + MER90 LTR ERV1 1 268 -346 1991 118 3 20 chr1 164738442 164738746 -117454918 - AluSg SINE Alu -11 299 1 1022 142 34 0 chr1 164738748 164738924 -117454740 - AluSg/x SINE Alu -7 305 124 297 278 10 10 chr1 164738924 164739021 -117454643 + MER90 LTR ERV1 290 386 -228 248 212 35 59 chr1 164739016 164739101 -117454563 + MER90 LTR ERV1 505 587 -27 * 388 191 0 0 chr1 164739535 164739603 -117454061 - tRNA-His-CAC tRNA tRNA -2 73 6 2106 88 3 14 chr1 164739668 164739962 -117453702 - AluSx SINE Alu -21 291 1 550 96 0 0 chr1 164740639 164740712 -117452952 + tRNA-Asn-AAC tRNA tRNA 2 74 -3 529 149 132 50 chr1 164740736 164740857 -117452807 + FLAM_C SINE Alu 1 131 -2 1817 121 0 0 chr1 164741011 164741268 -117452396 - AluSx SINE Alu -55 257 1 243 0 0 0 chr1 164741319 164741346 -117452318 + (T)n Simple_repeat Simple_repeat 1 27 0 417 300 105 16 chr1 164741807 164741997 -117451667 - Charlie4 DNA MER1_type -3 1958 1752 311 140 18 0 chr1 164741998 164742055 -117451609 + AluSp/q SINE Alu 240 297 -6 504 258 168 37 chr1 164742130 164742374 -117451290 - HAL1 LINE L1 -1168 1339 1064 308 175 0 0 chr1 164742453 164742510 -117451154 - AluSx SINE Alu -6 295 239 365 284 121 32 chr1 164742511 164742701 -117450963 + Charlie4 DNA MER1_type 1752 1958 -3 992 194 0 0 chr1 164743102 164743267 -117450397 + U1 snRNA snRNA 1 165 0 235 239 15 112 chr1 164743385 164743519 -117450145 + AluSq/x SINE Alu 2 122 -181 1491 108 4 87 chr1 164743616 164743893 -117449771 - AluSx SINE Alu -58 254 1 375 152 11 120 chr1 164743953 164744045 -117449619 - MER30 DNA MER1_type -148 82 1 383 155 27 2 chr1 164744492 164744570 -117449094 + LTR49 LTR ERV1 11 121 -464 333 318 17 12 chr1 164744795 164744968 -117448696 - MER41B LTR ERV1 -204 431 258 742 188 68 137 chr1 164745199 164745382 -117448282 + LTR49 LTR ERV1 78 272 -323 1894 124 10 7 chr1 164745382 164745543 -117448121 - AluSx SINE Alu -19 293 134 188 86 29 0 chr1 164745543 164745578 -117448086 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2170 78 0 4 chr1 164745579 164745860 -117447804 - AluY SINE Alu -31 280 1 1894 124 10 7 chr1 164745860 164745986 -117447678 - AluSx SINE Alu -177 135 3 742 188 68 137 chr1 164745986 164746095 -117447569 + LTR49 LTR ERV1 272 350 -245 2128 99 3 20 chr1 164746171 164746473 -117447191 - AluSp SINE Alu -16 297 1 445 45 91 0 chr1 164746498 164746564 -117447100 - MLT2A2 LTR ERVL 0 453 382 1040 100 44 0 chr1 164746566 164746726 -117446938 - BC200 scRNA scRNA -33 167 1 2467 101 51 6 chr1 164746727 164747082 -117446582 - MLT2A2 LTR ERVL -59 394 24 1983 84 45 18 chr1 164747764 164748050 -117445614 - AluSx SINE Alu -18 294 1 297 39 59 0 chr1 164748174 164748225 -117445439 + (TA)n Simple_repeat Simple_repeat 1 54 0 1835 104 0 0 chr1 164748324 164748575 -117445089 - AluSx SINE Alu -10 302 52 8877 288 54 31 chr1 164753455 164754505 -117439159 - MER66-int LTR ERV1 -1911 5845 4820 2003 118 0 0 chr1 164754505 164754793 -117438871 - AluSx SINE Alu -14 298 11 8877 288 54 31 chr1 164754793 164756346 -117437318 - MER66-int LTR ERV1 -2936 4820 3304 1726 176 14 0 chr1 164756346 164756641 -117437023 - AluSx SINE Alu -7 305 7 8877 288 54 31 chr1 164756641 164758801 -117434863 - MER66-int LTR ERV1 -4452 3304 1211 328 241 108 114 chr1 164758906 164759072 -117434592 - MER66-int LTR ERV1 -3574 3102 2938 1282 177 160 84 chr1 164759134 164759490 -117434174 - MER66-int LTR ERV1 -5562 1114 732 185 173 58 0 chr1 164759497 164759549 -117434115 + (TCCTG)n Simple_repeat Simple_repeat 4 58 0 1090 200 152 50 chr1 164759564 164759995 -117433669 - MER66A LTR ERV1 0 606 100 621 226 91 52 chr1 164760610 164760919 -117432745 - L1MC4 LINE L1 -2 8040 7720 212 232 0 14 chr1 164760949 164761018 -117432646 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 23 0 0 0 chr1 164761048 164761071 -117432593 + AT_rich Low_complexity Low_complexity 1 23 0 2020 174 35 0 chr1 164761102 164761446 -117432218 + MER57A LTR ERV1 14 369 -34 210 191 29 15 chr1 164761446 164761514 -117432150 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 295 261 43 0 chr1 164761850 164761919 -117431745 + tRNA-His-CAC tRNA tRNA 1 72 -3 325 219 101 8 chr1 164762576 164762695 -117430969 - L1ME3 LINE L1 -7 6155 6026 749 171 8 8 chr1 164762707 164762830 -117430834 + FLAM_C SINE Alu 2 124 -19 519 243 209 37 chr1 164762846 164763171 -117430493 - L1ME1 LINE L1 -108 6058 5678 383 144 11 33 chr1 164763187 164763277 -117430387 + MER74B LTR ERVL 1 88 -534 445 221 9 0 chr1 164763277 164763390 -117430274 - L1MA10 LINE L1 0 6334 6221 2322 60 0 20 chr1 164763390 164763691 -117429973 + AluY SINE Alu 1 295 -16 886 136 0 0 chr1 164763723 164763855 -117429809 + AluSq/x SINE Alu 1 132 -181 1256 149 0 14 chr1 164763855 164764070 -117429594 - L1MA4 LINE L1 -11 6289 6078 477 277 83 68 chr1 164764071 164764217 -117429447 - L1ME LINE L1 -5720 350 208 4841 167 36 9 chr1 164764217 164765116 -117428548 + MER49 LTR ERV1 1 923 0 477 277 83 68 chr1 164765116 164765308 -117428356 - L1ME LINE L1 -5862 208 7 208 319 14 28 chr1 164765375 164765447 -117428217 + MIR SINE MIR 78 148 -114 536 82 0 14 chr1 164765678 164765751 -117427913 - tRNA-Glu-GAG tRNA tRNA -3 72 1 194 183 37 134 chr1 164766484 164766566 -117427098 + MIR3 SINE MIR 15 88 -120 1287 180 107 0 chr1 164767548 164767809 -117425855 - AluJb SINE Alu -23 289 1 381 164 16 0 chr1 164769766 164769827 -117423837 + tRNA-Val-GTG tRNA tRNA 1 62 -14 1463 136 0 0 chr1 164769834 164770055 -117423609 + AluSp SINE Alu 93 313 0 427 180 16 31 chr1 164770111 164770239 -117423425 + L1ME2 LINE L1 996 1121 -5275 1840 101 0 39 chr1 164770249 164770387 -117423277 + AluY SINE Alu 2 144 -167 405 0 0 0 chr1 164770387 164770432 -117423232 + (TA)n Simple_repeat Simple_repeat 1 45 0 1840 101 0 39 chr1 164770432 164770599 -117423065 + AluY SINE Alu 144 295 -16 307 281 31 86 chr1 164770632 164770760 -117422904 + L1ME2 LINE L1 1662 1782 -4614 674 207 64 0 chr1 164770995 164771135 -117422529 - U1 snRNA snRNA -14 151 3 428 132 0 0 chr1 164772173 164772241 -117421423 - tRNA-Glu-GAG tRNA tRNA -3 72 5 324 311 30 24 chr1 164772723 164772887 -117420777 + L2 LINE L2 2351 2515 -799 232 223 45 139 chr1 164772942 164773144 -117420520 - MER20 DNA MER1_type -36 183 1 1038 159 97 18 chr1 164774027 164774253 -117419411 - MLT1A1 LTR MaLR 0 365 122 670 245 170 53 chr1 164774296 164774789 -117418875 + L1ME2 LINE L1 4766 5316 -899 3140 183 28 26 chr1 164775964 164776580 -117417084 + MER49 LTR ERV1 307 923 0 443 230 61 48 chr1 164776593 164776862 -117416802 + L1ME2 LINE L1 5269 5540 -703 919 121 189 47 chr1 164776862 164777052 -117416612 - AluSg/x SINE Alu -14 298 82 822 246 135 28 chr1 164777055 164777595 -117416069 + L1ME2 LINE L1 5530 6217 -16 642 138 0 11 chr1 164777612 164777706 -117415958 + AluSg/x SINE Alu 195 287 -25 314 206 15 15 chr1 164778162 164778230 -117415434 - tRNA-His-CAC tRNA tRNA -3 72 5 2393 83 13 0 chr1 164778486 164778787 -117414877 - AluSx SINE Alu -7 305 1 563 45 0 0 chr1 164779482 164779549 -117414115 - tRNA-Gly-GGG tRNA tRNA -7 67 1 1936 113 0 45 chr1 164781087 164781413 -117412251 + AluSc SINE Alu 1 313 0 1817 204 19 27 chr1 164781698 164782071 -117411593 - MLT1A2 LTR MaLR 0 374 5 681 0 0 14 chr1 164783356 164783430 -117410234 - tRNA-Val-GTG tRNA tRNA -3 73 1 431 53 70 0 chr1 164783504 164783561 -117410103 + Alu SINE Alu 229 289 -22 14415 207 32 16 chr1 164785042 164786476 -117407188 + L1P4 LINE L1 709 2119 -4104 1954 115 54 0 chr1 164786476 164786755 -117406909 + AluSq SINE Alu 3 296 -17 14415 207 32 16 chr1 164786755 164788938 -117404726 + L1P4 LINE L1 2119 4266 -1957 306 0 0 0 chr1 164788938 164788972 -117404692 + (CA)n Simple_repeat Simple_repeat 1 34 0 14415 207 32 16 chr1 164788972 164789229 -117404435 + L1P4 LINE L1 4266 4517 -1706 1942 149 7 7 chr1 164789229 164789530 -117404134 + AluSx SINE Alu 1 301 -11 14415 207 32 16 chr1 164789530 164790325 -117403339 + L1P4 LINE L1 4517 5528 -695 31 44 0 0 chr1 164790679 164790724 -117402940 + AT_rich Low_complexity Low_complexity 1 45 0 1582 245 79 14 chr1 164793973 164794405 -117399259 + MLT1C LTR MaLR 6 465 -2 461 311 49 0 chr1 164796312 164796476 -117397188 + MIR SINE MIR 79 250 -12 2240 124 0 0 chr1 164796587 164796894 -117396770 + AluSq SINE Alu 1 307 -6 1748 156 13 38 chr1 164798180 164798494 -117395170 + AluJo SINE Alu 5 310 -2 248 299 108 30 chr1 164800568 164800735 -117392929 + MIR SINE MIR 41 220 -42 229 350 126 0 chr1 164801826 164801929 -117391735 - MER5B DNA MER1_type -62 116 1 317 261 62 34 chr1 164802521 164802645 -117391019 + MIR SINE MIR 4 133 -75 220 290 97 0 chr1 164802650 164802712 -117390952 - MIR SINE MIR -109 99 32 250 268 0 18 chr1 164802868 164802924 -117390740 + L2 LINE L2 3247 3301 -12 689 284 40 27 chr1 164803893 164804118 -117389546 - L3 LINE CR1 -23 1554 1327 291 316 10 0 chr1 164804398 164804496 -117389168 - MER5B DNA MER1_type -79 99 1 220 253 50 61 chr1 164805559 164805658 -117388006 - L2 LINE L2 -48 3265 3168 23 0 0 0 chr1 164807209 164807232 -117386432 + AT_rich Low_complexity Low_complexity 1 23 0 281 222 12 12 chr1 164807750 164807831 -117385833 + (TA)n Simple_repeat Simple_repeat 1 81 0 263 267 95 19 chr1 164807852 164808062 -117385602 - L1MC/D LINE L1 -2329 5479 5254 190 244 24 85 chr1 164809614 164809696 -117383968 - MIR SINE MIR -79 129 53 2418 74 0 3 chr1 164809707 164810006 -117383658 - AluSp SINE Alu -15 298 1 394 358 68 18 chr1 164810058 164810279 -117383385 - MIR SINE MIR -26 236 5 369 313 188 6 chr1 164810271 164810431 -117383233 - MIR SINE MIR -52 210 22 * 574 309 25 0 chr1 164810843 164811044 -117382620 + MIR SINE MIR 57 262 0 452 267 46 23 chr1 164812395 164812582 -117381082 - MIR SINE MIR -65 143 5 26 88 0 0 chr1 164813732 164813800 -117379864 + AT_rich Low_complexity Low_complexity 1 68 0 406 221 97 48 chr1 164814927 164815072 -117378592 + Charlie7 DNA MER1_type 1 152 -2460 248 342 18 26 chr1 164815391 164815505 -117378159 + MIR SINE MIR 19 131 -77 183 191 119 0 chr1 164816149 164816191 -117377473 + MIR SINE MIR 183 229 -33 1287 122 0 16 chr1 164816480 164816669 -117376995 + AluSx SINE Alu 1 186 -126 460 168 34 40 chr1 164817188 164817337 -117376327 + CT-rich Low_complexity Low_complexity 2 149 0 432 0 0 0 chr1 164818095 164818143 -117375521 + (TA)n Simple_repeat Simple_repeat 2 49 0 2417 66 0 16 chr1 164818143 164818447 -117375217 - AluY SINE Alu -12 299 1 1130 8 0 0 chr1 164818639 164818762 -117374902 + L1PA4 LINE L1 6032 6154 -1 25 0 0 0 chr1 164819402 164819427 -117374237 + AT_rich Low_complexity Low_complexity 1 25 0 2253 40 87 7 chr1 164819517 164819794 -117373870 + AluY SINE Alu 1 299 -12 196 337 11 11 chr1 164820165 164820254 -117373410 - L2 LINE L2 -208 3064 2976 559 275 80 9 chr1 164820266 164820511 -117373153 + L1ME3A LINE L1 5691 5949 -217 211 300 102 65 chr1 164820754 164821107 -117372557 - L2 LINE L2 -461 2853 2488 253 319 44 0 chr1 164821734 164821825 -117371839 + MARNA DNA Mariner 94 188 -398 2363 95 3 3 chr1 164822058 164822362 -117371302 + AluSq SINE Alu 1 304 -9 584 199 56 43 chr1 164823070 164823231 -117370433 - MIR SINE MIR -50 212 50 394 298 50 31 chr1 164823412 164823573 -117370091 - L2 LINE L2 0 3272 3109 221 330 28 57 chr1 164823683 164823789 -117369875 + L2 LINE L2 3150 3252 -20 2071 118 66 39 chr1 164823982 164824346 -117369318 + THE1C LTR MaLR 2 375 0 1833 170 7 0 chr1 164824414 164824708 -117368956 + AluJo SINE Alu 5 300 -12 1966 162 0 10 chr1 164825310 164825613 -117368051 + AluJb SINE Alu 1 300 -12 205 269 15 15 chr1 164826575 164826642 -117367022 + GA-rich Low_complexity Low_complexity 1 67 0 537 264 101 17 chr1 164826957 164827135 -117366529 - MIR SINE MIR -30 232 40 2353 104 0 0 chr1 164827683 164827982 -117365682 - AluSx SINE Alu -13 299 1 197 280 67 63 chr1 164828498 164828737 -117364927 + L2 LINE L2 1427 1666 -1648 392 0 21 0 chr1 164828754 164828802 -117364862 + (CA)n Simple_repeat Simple_repeat 2 50 0 302 345 128 34 chr1 164828913 164829148 -117364516 - L2 LINE L2 -17 3255 2999 931 210 44 6 chr1 164829314 164829495 -117364169 - MER5A DNA MER1_type -1 188 1 376 323 30 15 chr1 164829502 164829635 -117364029 + L2 LINE L2 1846 1980 -1334 381 341 78 27 chr1 164829649 164829980 -117363684 + L2 LINE L2 2625 2972 -342 2505 142 35 35 chr1 164830045 164830393 -117363271 + MSTB LTR MaLR 3 353 -73 1798 180 0 0 chr1 164830393 164830699 -117362965 - AluSx SINE Alu -6 306 1 2505 142 35 35 chr1 164830699 164830773 -117362891 + MSTB LTR MaLR 352 425 -1 590 290 95 30 chr1 164831734 164831965 -117361699 - MIR SINE MIR -12 250 5 214 344 0 0 chr1 164831990 164832051 -117361613 - MIR SINE MIR -115 93 33 2302 84 0 0 chr1 164832851 164833159 -117360505 - AluY SINE Alu 0 308 1 231 208 0 19 chr1 164833704 164833757 -117359907 + MIR SINE MIR 192 243 -19 585 198 80 104 chr1 164833891 164833991 -117359673 - MER106B DNA MER1_type 0 1059 958 3231 159 11 25 chr1 164833991 164834518 -117359146 + MLT2B1 LTR ERVL 1 520 0 585 198 80 104 chr1 164834518 164834629 -117359035 - MER106B DNA MER1_type -101 958 30 183 100 0 0 chr1 164835279 164835309 -117358355 + (CCTAA)n Simple_repeat Simple_repeat 1 30 0 195 237 26 0 chr1 164835649 164835687 -117357977 - L2 LINE L2 -13 3259 3221 357 309 111 84 chr1 164836135 164836417 -117357247 - L2 LINE L2 0 3272 2999 1367 220 215 21 chr1 164836417 164836840 -117356824 + MLT1D LTR MaLR 1 505 0 357 309 111 84 chr1 164836840 164837412 -117356252 - L2 LINE L2 -273 2999 2392 289 267 12 0 chr1 164837584 164837670 -117355994 - L2 LINE L2 0 3313 3227 238 174 58 70 chr1 164837848 164837934 -117355730 - L1M4b LINE L1 -5461 1398 1314 2175 146 125 13 chr1 164838350 164838735 -117354929 + MSTA LTR MaLR 1 428 0 503 152 9 0 chr1 164838930 164838947 -117354717 + (TA)n Simple_repeat Simple_repeat 2 17 -97 2492 132 28 0 chr1 164838947 164839302 -117354362 - MER47A DNA MER2_type -1 365 1 503 152 9 0 chr1 164839302 164839313 -117354351 + (TA)n Simple_repeat Simple_repeat 17 26 -88 1564 199 101 9 chr1 164839313 164839630 -117354034 - MER7A DNA MER2_type -1 345 2 503 152 9 0 chr1 164839630 164839712 -117353952 + (TA)n Simple_repeat Simple_repeat 26 114 0 286 336 89 31 chr1 164840283 164840575 -117353089 - L2 LINE L2 -1402 1912 1604 2124 109 3 20 chr1 164840686 164840980 -117352684 + AluSx SINE Alu 1 298 -14 414 0 0 0 chr1 164840980 164841026 -117352638 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 195 42 0 0 chr1 164841026 164841050 -117352614 + (GA)n Simple_repeat Simple_repeat 2 25 0 633 180 0 41 chr1 164842909 164843031 -117350633 + Tigger1 DNA MER2_type 41 157 -2261 * 1305 167 9 0 chr1 164843020 164843235 -117350429 + Tigger1 DNA MER2_type 2202 2418 0 439 224 126 42 chr1 164843601 164843744 -117349920 - MIR3 SINE MIR -47 161 7 214 214 0 24 chr1 164844519 164844561 -117349103 - L2 LINE L2 -74 3239 3199 206 293 25 58 chr1 164844675 164844779 -117348885 - MIR SINE MIR -92 116 15 361 379 71 53 chr1 164845599 164845921 -117347743 - L2 LINE L2 -22 3250 2923 308 221 74 74 chr1 164847702 164847824 -117345840 + L2 LINE L2 3183 3304 -9 1255 174 95 12 chr1 164847923 164848165 -117345499 - MSTB LTR MaLR 0 426 165 2346 97 0 28 chr1 164848439 164848759 -117344905 + AluSx SINE Alu 1 311 -1 585 0 0 0 chr1 164849119 164849184 -117344480 + (TA)n Simple_repeat Simple_repeat 2 66 0 192 266 303 0 chr1 164849420 164849529 -117344135 + MIR SINE MIR 121 262 0 226 353 84 21 chr1 164849536 164849726 -117343938 - L2 LINE L2 -427 2887 2686 329 339 17 9 chr1 164849855 164849970 -117343694 - L2 LINE L2 -616 2698 2583 434 284 106 92 chr1 164850057 164850271 -117343393 + L2 LINE L2 2844 3053 -219 2043 151 2 101 chr1 164850271 164850676 -117342988 - MLT1A1 LTR MaLR 0 365 1 434 284 106 92 chr1 164850676 164850884 -117342780 + L2 LINE L2 3053 3272 0 4186 166 65 20 chr1 164851669 164852868 -117340796 - L1P4 LINE L1 -567 5599 4332 2430 59 3 20 chr1 164852868 164853172 -117340492 - AluY SINE Alu -10 301 3 4186 166 65 20 chr1 164853172 164853226 -117340438 - L1P4 LINE L1 -1834 4332 4282 21 0 0 0 chr1 164853231 164853252 -117340412 + AT_rich Low_complexity Low_complexity 1 21 0 740 258 81 27 chr1 164853469 164853767 -117339897 - L1ME LINE L1 -299 5822 5509 21 0 0 0 chr1 164854507 164854528 -117339136 + AT_rich Low_complexity Low_complexity 1 21 0 2262 119 0 6 chr1 164854926 164855237 -117338427 + AluSx SINE Alu 1 309 -3 779 176 16 43 chr1 164856239 164856427 -117337237 + MER53 DNA DNA 4 186 -3 341 195 24 130 chr1 164856720 164856843 -117336821 + MIR SINE MIR 121 230 -32 29 0 0 0 chr1 164856851 164856880 -117336784 + AT_rich Low_complexity Low_complexity 1 29 0 195 333 99 57 chr1 164856970 164857111 -117336553 + MIR3 SINE MIR 23 169 -39 612 243 14 75 chr1 164857495 164857709 -117335955 + MIR SINE MIR 33 233 -29 215 368 40 0 chr1 164857905 164857981 -117335683 - MIR3 SINE MIR -22 186 108 518 268 20 17 chr1 164858152 164858372 -117335292 + MIR SINE MIR 2 262 0 592 256 61 28 chr1 164859422 164859634 -117334030 + MIR SINE MIR 24 240 -22 2480 46 3 7 chr1 164859638 164859941 -117333723 + AluY SINE Alu 4 305 -6 2239 105 0 0 chr1 164860172 164860468 -117333196 + AluSx SINE Alu 1 296 -16 299 182 0 0 chr1 164860468 164860523 -117333141 + Alu SINE Alu 245 299 -3 2335 71 3 0 chr1 164860524 164860807 -117332857 + AluY SINE Alu 1 284 -27 40627 51 5 3 chr1 164861011 164866028 -117327636 - L1P LINE L1 -1121 5025 2 192 260 40 0 chr1 164866230 164866280 -117327384 + MIR SINE MIR 101 152 -56 700 266 23 19 chr1 164866293 164866507 -117327157 + L2 LINE L2 3099 3313 0 1890 221 128 14 chr1 164866552 164867046 -117326618 - MLT1H1 LTR MaLR -5 550 1 359 276 77 88 chr1 164867067 164867455 -117326209 - MLT1H1-int LTR MaLR -27 1344 961 297 146 0 0 chr1 164867998 164868046 -117325618 + 5S rRNA rRNA 1 48 -73 227 281 31 31 chr1 164868388 164868484 -117325180 - MLT1A1-int LTR MaLR -1550 101 6 1715 249 102 33 chr1 164868489 164869007 -117324657 - MLT1H1 LTR MaLR -1 554 1 713 286 27 13 chr1 164869230 164869454 -117324210 + MIR SINE MIR 2 228 -34 2509 52 7 0 chr1 164869780 164870086 -117323578 - AluY SINE Alu -3 308 1 1022 233 41 96 chr1 164870171 164870558 -117323106 - MLT1I LTR MaLR -7 402 37 402 272 65 24 chr1 164870602 164870803 -117322861 + MLT1H LTR MaLR 10 253 -246 21 57 0 0 chr1 164871105 164871140 -117322524 + AT_rich Low_complexity Low_complexity 1 35 0 286 317 106 19 chr1 164871190 164871207 -117322457 + L1ME4a LINE L1 5645 5659 -462 1547 186 18 101 chr1 164871207 164871604 -117322060 - MLT1A1 LTR MaLR -1 364 1 286 317 106 19 chr1 164871604 164871898 -117321766 + L1ME4a LINE L1 5659 5983 -138 909 287 87 77 chr1 164875139 164875623 -117318041 + L3 LINE CR1 899 1377 -200 2391 71 7 0 chr1 164875623 164875919 -117317745 + AluSp SINE Alu 1 298 -15 2433 60 0 13 chr1 164875919 164876221 -117317443 + AluY SINE Alu 1 298 -13 909 287 87 77 chr1 164876221 164876321 -117317343 + L3 LINE CR1 1376 1490 -87 27 29 0 0 chr1 164876382 164876416 -117317248 + AT_rich Low_complexity Low_complexity 1 34 0 2255 246 56 4 chr1 164876452 164876988 -117316676 - L1ME3A LINE L1 -35 6135 5572 2618 55 0 0 chr1 164877032 164877343 -117316321 + AluY SINE Alu 1 311 0 649 257 34 6 chr1 164877343 164877518 -117316146 + L1ME LINE L1 5356 5535 -627 577 161 92 0 chr1 164877518 164877648 -117316016 + MER112 DNA MER1_type 17 158 -102 936 153 28 17 chr1 164878114 164878291 -117315373 + MER96B DNA MER1_type? 1 179 -238 228 288 0 15 chr1 164879088 164879154 -117314510 + Charlie8 DNA MER1_type 2345 2409 -8 1535 201 145 55 chr1 164879636 164880154 -117313510 + MLT1F1 LTR MaLR 1 555 0 471 298 129 0 chr1 164881246 164881417 -117312247 + MIR SINE MIR 66 258 -4 1937 152 65 22 chr1 164881615 164881938 -117311726 - MER1B DNA MER1_type 0 337 1 893 306 86 16 chr1 164882293 164882675 -117310989 + L2 LINE L2 2553 2961 -353 1914 62 8 4 chr1 164883105 164883384 -117310280 + AluY SINE Alu 39 318 0 2380 57 40 3 chr1 164883629 164883929 -117309735 - AluY SINE Alu 0 311 1 515 281 15 59 chr1 164884140 164884410 -117309254 + L1MC5 LINE L1 7609 7866 -95 253 319 0 0 chr1 164885223 164885295 -117308369 + L2 LINE L2 2999 3070 -202 1887 98 10 85 chr1 164885750 164886098 -117307566 + AluSq SINE Alu 1 325 0 411 21 0 0 chr1 164887554 164887602 -117306062 + (TG)n Simple_repeat Simple_repeat 2 49 0 234 105 0 0 chr1 164887602 164887640 -117306024 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 331 272 88 64 chr1 164887687 164887812 -117305852 - L2 LINE L2 0 3272 3145 203 364 39 13 chr1 164888147 164888224 -117305440 + MIR SINE MIR 1 79 -183 231 167 0 0 chr1 164888224 164888266 -117305398 + MER116 DNA Mariner 1 42 -38 250 240 229 0 chr1 164888351 164888447 -117305217 + MIR SINE MIR 139 256 -6 664 124 0 99 chr1 164888555 164888676 -117304988 + L1MC1 LINE L1 6216 6324 -9 841 151 0 43 chr1 164888676 164888815 -117304849 + FLAM_C SINE Alu 1 133 0 1371 174 89 26 chr1 164889834 164890138 -117303526 + MER33 DNA MER1_type 2 324 0 339 293 86 9 chr1 164890397 164890513 -117303151 + L2 LINE L2 3148 3272 0 2201 96 0 10 chr1 164890774 164891089 -117302575 + AluSg SINE Alu 1 310 0 4628 258 46 45 chr1 164891096 164891574 -117302090 + L2 LINE L2 1437 1913 -1400 2314 100 0 0 chr1 164891574 164891864 -117301800 - AluSx SINE Alu -21 291 2 4628 258 46 45 chr1 164891864 164892940 -117300724 + L2 LINE L2 1913 3036 -277 239 208 75 0 chr1 164892941 164892994 -117300670 + L1ME1 LINE L1 5555 5611 -559 1805 156 60 23 chr1 164892998 164893347 -117300317 + MER46B DNA MER2_type -1 235 -1 2084 202 56 33 chr1 164893347 164893861 -117299803 + L1ME1 LINE L1 5600 6125 -41 2302 239 45 8 chr1 164894124 164894639 -117299025 + MLT1E LTR MaLR 1 534 -59 5190 123 37 10 chr1 164894770 164895589 -117298075 - L1PA16 LINE L1 -3 6163 5323 720 216 0 88 chr1 164895589 164895770 -117297894 - AluJb SINE Alu -20 292 128 275 292 56 22 chr1 164895785 164895874 -117297790 + MIR SINE MIR 158 249 -13 249 252 37 84 chr1 164895977 164896084 -117297580 + L2 LINE L2 3128 3229 -84 387 210 161 0 chr1 164896084 164896165 -117297499 + L1ME LINE L1 5602 5695 -471 260 260 13 26 chr1 164896165 164896242 -117297422 + L2 LINE L2 3237 3312 -1 481 361 12 6 chr1 164896271 164896440 -117297224 - L3b LINE CR1 -259 1324 1155 369 295 62 0 chr1 164896871 164896983 -117296681 + MIR SINE MIR 122 240 -22 295 140 35 18 chr1 164897810 164897867 -117295797 + MER4A LTR ERV1 1 58 -606 730 256 5 0 chr1 164897870 164898061 -117295603 + L1PA7 LINE L1 6 197 -6666 13525 189 19 55 chr1 164898070 164899137 -117294527 + L1PA7 LINE L1 1959 3063 -3807 1732 133 107 4 chr1 164899137 164899408 -117294256 - AluSp SINE Alu -14 299 1 13525 189 19 55 chr1 164899408 164900299 -117293365 + L1PA7 LINE L1 3063 3985 -2885 1141 61 0 0 chr1 164900299 164900430 -117293234 + AluY SINE Alu 2 132 -179 13525 189 19 55 chr1 164900430 164900578 -117293086 + L1PA7 LINE L1 3985 4137 -2733 2096 47 0 0 chr1 164900578 164900808 -117292856 + L1PA3 LINE L1 5917 6152 -3 13525 189 19 55 chr1 164900808 164900837 -117292827 + L1PA7 LINE L1 4137 4166 -2704 1558 68 0 0 chr1 164900837 164901029 -117292635 + AluY SINE Alu 118 309 -2 13525 189 19 55 chr1 164901029 164902036 -117291628 + L1PA7 LINE L1 4166 5208 -1662 189 0 0 0 chr1 164902036 164902057 -117291607 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 13525 189 19 55 chr1 164902057 164903761 -117289903 + L1PA7 LINE L1 5208 6783 -87 2494 122 3 3 chr1 164903471 164903839 -117289825 + L1PB1 LINE L1 6498 6865 -2 * 366 146 0 0 chr1 164903850 164903905 -117289759 + MER4A LTR ERV1 44 98 -566 1821 116 170 78 chr1 164903905 164904275 -117289389 + MER4A LTR ERV1 261 664 0 515 271 41 0 chr1 164905256 164905378 -117288286 + MIR SINE MIR 25 151 -57 570 176 0 0 chr1 164905383 164905485 -117288179 + L1MD3 LINE L1 7894 7995 0 183 271 68 0 chr1 164905486 164905545 -117288119 + MIR3 SINE MIR 142 204 -4 324 252 56 19 chr1 164906065 164906172 -117287492 - MIR3 SINE MIR -7 201 91 385 343 176 19 chr1 164906184 164906598 -117287066 + L2 LINE L2 2463 2941 -373 298 272 74 0 chr1 164906811 164906892 -117286772 + L2 LINE L2 3186 3272 0 205 306 102 32 chr1 164906911 164907068 -117286596 + L2 LINE L2 2807 2974 -298 2328 101 0 0 chr1 164907069 164907367 -117286297 + AluSx SINE Alu 3 300 -12 2096 121 13 7 chr1 164907379 164907684 -117285980 + AluSg SINE Alu 3 309 -1 273 271 24 24 chr1 164907831 164907916 -117285748 + L2 LINE L2 3221 3305 -8 1479 188 32 45 chr1 164908393 164908702 -117284962 - AluJo SINE Alu -7 305 1 3955 158 41 14 chr1 164908719 164909427 -117284237 - L1MB3 LINE L1 -10 6173 5447 363 232 85 0 chr1 164910009 164910091 -117283573 - MIR SINE MIR -78 130 42 609 283 148 9 chr1 164910590 164910813 -117282851 - MIR SINE MIR 0 262 9 21 0 0 0 chr1 164911794 164911815 -117281849 + AT_rich Low_complexity Low_complexity 1 21 0 253 239 30 15 chr1 164912804 164912871 -117280793 - MIR SINE MIR -104 158 91 1800 124 6 84 chr1 164912947 164913093 -117280571 + AluJb SINE Alu 1 110 -202 240 35 0 0 chr1 164913093 164913122 -117280542 + (CA)n Simple_repeat Simple_repeat 2 30 0 1800 124 6 84 chr1 164913122 164913297 -117280367 + AluJb SINE Alu 110 297 -15 2067 87 49 0 chr1 164913883 164914170 -117279494 + AluSx SINE Alu 5 304 0 1330 206 20 30 chr1 164915279 164915397 -117278267 + AluJo SINE Alu 3 121 -181 2066 130 3 7 chr1 164915397 164915697 -117277967 - AluSx SINE Alu -13 299 1 1330 206 20 30 chr1 164915697 164915874 -117277790 + AluJo SINE Alu 121 295 -7 226 299 35 11 chr1 164915919 164916006 -117277658 + MER5A DNA MER1_type 80 168 -21 414 164 22 104 chr1 164916037 164916171 -117277493 - MIR3 SINE MIR -48 160 38 644 223 138 11 chr1 164917896 164918084 -117275580 + MER112 DNA MER1_type 44 255 -5 203 333 21 31 chr1 164918086 164918182 -117275482 - L2 LINE L2 -177 3095 3001 254 237 93 129 chr1 164918436 164918538 -117275126 + MIR3 SINE MIR 54 151 -57 2300 95 0 0 chr1 164918538 164918832 -117274832 - AluY SINE Alu -17 294 1 254 237 93 129 chr1 164918832 164918868 -117274796 + MIR3 SINE MIR 151 187 -21 264 340 147 23 chr1 164919091 164919350 -117274314 + L2 LINE L2 2029 2319 -995 188 271 0 0 chr1 164919742 164919790 -117273874 + L2 LINE L2 3265 3312 -1 1491 235 40 123 chr1 164919971 164921148 -117272516 + L2 LINE L2 2230 3313 0 2218 126 0 0 chr1 164921415 164921717 -117271947 + AluSx SINE Alu 1 302 -10 25 31 0 0 chr1 164922831 164922863 -117270801 + AT_rich Low_complexity Low_complexity 1 32 0 258 318 11 11 chr1 164922991 164923079 -117270585 + MIR SINE MIR 20 107 -155 244 231 0 0 chr1 164923314 164923366 -117270298 + L3 LINE CR1 1334 1385 -192 395 393 7 0 chr1 164923446 164923596 -117270068 + L3 LINE CR1 1422 1572 -5 415 321 68 16 chr1 164924213 164924403 -117269261 - MIR SINE MIR -39 223 24 22 0 0 0 chr1 164924574 164924596 -117269068 + AT_rich Low_complexity Low_complexity 1 22 0 3439 159 27 5 chr1 164924629 164925221 -117268443 + L1MB7 LINE L1 5580 6184 0 1667 146 3 125 chr1 164926527 164926684 -117266980 + AluJo SINE Alu 2 96 -206 1928 108 8 0 chr1 164926684 164926952 -117266712 + AluSp SINE Alu 34 303 -10 1667 146 3 125 chr1 164926952 164927137 -117266527 + AluJo SINE Alu 96 302 0 230 309 37 113 chr1 164927246 164927599 -117266065 + L2 LINE L2 2853 3178 -94 412 310 43 0 chr1 164927812 164927928 -117265736 - L2 LINE L2 -30 3242 3122 653 339 96 59 chr1 164928021 164928786 -117264878 + L2 LINE L2 2456 3272 0 255 250 36 13 chr1 164928764 164928891 -117264773 - L1ME4a LINE L1 -22 6099 5968 * 2457 76 7 0 chr1 164929129 164929431 -117264233 - AluSx SINE Alu -8 304 1 207 308 51 0 chr1 164929456 164929534 -117264130 + L2 LINE L2 3190 3271 -1 478 329 115 21 chr1 164929573 164929807 -117263857 + MIR SINE MIR 6 261 -1 2087 135 3 0 chr1 164930222 164930518 -117263146 - AluSx SINE Alu -15 297 1 25 51 0 0 chr1 164930597 164930636 -117263028 + AT_rich Low_complexity Low_complexity 1 39 0 466 330 79 31 chr1 164931581 164931808 -117261856 + MIR SINE MIR 25 262 0 1842 147 33 3 chr1 164931920 164932220 -117261444 + AluSx SINE Alu 1 309 -3 379 373 209 12 chr1 164932386 164932721 -117260943 - L2 LINE L2 -5 3267 2867 460 237 58 64 chr1 164932963 164933033 -117260631 + MIR SINE MIR 91 160 -102 5364 68 3 1 chr1 164933033 164933734 -117259930 - L1PA7 LINE L1 0 6154 5453 460 237 58 64 chr1 164933734 164933836 -117259828 + MIR SINE MIR 160 262 0 205 389 70 32 chr1 164934010 164934167 -117259497 + MIR SINE MIR 84 246 -16 2686 158 43 4 chr1 164936850 164937339 -117256325 + MER44D DNA MER2_type 4 566 -39 981 237 85 75 chr1 164937898 164938335 -117255329 + MLT1H LTR MaLR 51 495 -54 765 220 86 14 chr1 164938335 164938544 -117255120 - MER58A DNA MER1_type 0 224 1 981 237 85 75 chr1 164938544 164938600 -117255064 + MLT1H LTR MaLR 495 549 0 378 287 131 30 chr1 164938681 164938918 -117254746 - MIR SINE MIR -1 261 1 277 198 23 12 chr1 164939381 164939467 -117254197 + CT-rich Low_complexity Low_complexity 2 88 0 454 164 10 19 chr1 164939486 164939590 -117254074 + CT-rich Low_complexity Low_complexity 4 106 0 208 100 0 50 chr1 164939787 164939827 -117253837 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 180 111 0 0 chr1 164940098 164940125 -117253539 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr1 164940627 164940651 -117253013 + AT_rich Low_complexity Low_complexity 1 24 0 2153 109 0 0 chr1 164940728 164941032 -117252632 + AluSx SINE Alu 1 304 0 489 294 119 11 chr1 164941168 164941345 -117252319 + MIR SINE MIR 46 241 -21 2268 105 3 0 chr1 164941852 164942157 -117251507 - AluSx SINE Alu -6 306 1 1273 200 44 19 chr1 164942503 164942773 -117250891 + AluJo SINE Alu 35 311 -1 639 289 175 48 chr1 164942977 164943526 -117250138 - L2 LINE L2 -14 3258 2646 858 255 187 42 chr1 164943751 164944346 -117249318 - L2 LINE L2 -4 3309 2641 2391 84 7 0 chr1 164944453 164944762 -117248902 - AluSp SINE Alu -2 311 1 470 201 88 103 chr1 164945317 164945521 -117248143 + MER102a DNA MER1_type 128 328 -2 312 122 122 73 chr1 164945639 164945721 -117247943 + MIR3 SINE MIR 96 181 -27 351 0 0 0 chr1 164946267 164946306 -117247358 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr1 164947676 164947697 -117245967 + (TA)n Simple_repeat Simple_repeat 2 22 0 298 326 99 35 chr1 164947802 164947943 -117245721 - L2 LINE L2 -5 3267 3118 641 282 88 5 chr1 164949192 164949408 -117244256 - MIR SINE MIR -26 236 3 245 226 68 30 chr1 164950918 164951051 -117242613 - L1ME4a LINE L1 -2 6119 5982 269 203 0 31 chr1 164951175 164951239 -117242425 + GA-rich Low_complexity Low_complexity 2 63 0 279 256 43 34 chr1 164953002 164953119 -117240545 + L1ME LINE L1 5618 5735 -386 224 30 30 0 chr1 164953297 164953330 -117240334 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2099 104 4 0 chr1 164953333 164953612 -117240052 - AluSx SINE Alu -32 280 1 207 283 19 0 chr1 164954696 164954749 -117238915 + MIR SINE MIR 71 124 -138 2516 164 50 38 chr1 164955342 164955798 -117237866 + MLT1D LTR MaLR 1 465 -40 2457 92 0 0 chr1 164955798 164956102 -117237562 + AluSx SINE Alu 1 304 -8 2516 164 50 38 chr1 164956102 164956144 -117237520 + MLT1D LTR MaLR 465 505 0 567 265 153 23 chr1 164956678 164956893 -117236771 + MIR SINE MIR 19 261 -1 263 324 0 49 chr1 164956992 164957094 -117236570 + L2 LINE L2 3193 3289 -24 1956 145 3 0 chr1 164957095 164957402 -117236262 - AluSx SINE Alu 0 308 1 488 288 127 15 chr1 164958337 164958542 -117235122 + MIR SINE MIR 7 234 -28 233 185 62 31 chr1 164958542 164958607 -117235057 - MER69 DNA AcHobo -110 67 1 24 32 0 0 chr1 164959388 164959419 -117234245 + AT_rich Low_complexity Low_complexity 1 31 0 354 336 17 8 chr1 164959501 164959620 -117234044 - MIR SINE MIR -67 141 31 22 35 0 0 chr1 164960915 164960944 -117232720 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 164961009 164961039 -117232625 + AT_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr1 164961072 164961107 -117232557 + (TG)n Simple_repeat Simple_repeat 2 36 0 854 218 39 0 chr1 164962858 164963037 -117230627 - MER5A DNA MER1_type -3 186 1 343 293 75 9 chr1 164963146 164963252 -117230412 - L2 LINE L2 -1 3312 3200 495 261 115 35 chr1 164963417 164963588 -117230076 - MIR SINE MIR -14 248 53 2048 151 3 0 chr1 164963588 164963899 -117229765 + AluJo SINE Alu 1 312 0 495 261 115 35 chr1 164963899 164963953 -117229711 - MIR SINE MIR -209 53 5 389 289 94 8 chr1 164963956 164964191 -117229473 - MER112 DNA MER1_type 0 256 2 2122 113 0 17 chr1 164964280 164964582 -117229082 + AluSg SINE Alu 1 297 -13 533 136 23 0 chr1 164964649 164964737 -117228927 - AluSg/x SINE Alu -15 294 205 223 273 131 40 chr1 164965092 164965191 -117228473 - L2 LINE L2 -1 3271 3164 2181 106 0 7 chr1 164965984 164966285 -117227379 + AluSx SINE Alu 1 299 -13 4632 89 2 3 chr1 164966492 164967124 -117226540 + LTR10E LTR ERV1 1 631 -2 259 265 0 29 chr1 164967242 164967310 -117226354 + L2 LINE L2 3205 3270 -2 297 264 35 11 chr1 164967431 164967518 -117226146 - L2 LINE L2 -2 3311 3223 3921 123 32 19 chr1 164967525 164968152 -117225512 - MER41B LTR ERV1 0 635 1 1887 139 6 54 chr1 164968576 164968893 -117224771 - AluJb SINE Alu -10 302 1 3871 217 41 15 chr1 164970522 164971611 -117222053 + L1MB7 LINE L1 3284 4401 -1745 * 4272 158 21 22 chr1 164971608 164972816 -117220848 + L1PA16 LINE L1 4826 6029 -137 263 89 111 0 chr1 164972826 164972871 -117220793 + L1PA16 LINE L1 6108 6157 -9 3430 183 51 47 chr1 164972883 164973751 -117219913 + L1MB7 LINE L1 4400 5281 -903 414 0 0 0 chr1 164973751 164973797 -117219867 + (CA)n Simple_repeat Simple_repeat 2 47 0 3430 183 51 47 chr1 164973797 164974627 -117219037 + L1MB7 LINE L1 5281 6107 -77 1209 188 99 30 chr1 164974625 164974670 -117218994 + L1MC1 LINE L1 4465 4505 -1641 * 2138 128 0 3 chr1 164974670 164974982 -117218682 + AluSx SINE Alu 1 311 -1 1209 188 99 30 chr1 164974982 164975298 -117218366 + L1MC1 LINE L1 4505 4851 -1295 * 4917 157 38 9 chr1 164975296 164976263 -117217401 + L1MC1 LINE L1 5338 6332 -1 2477 68 0 0 chr1 164976811 164977119 -117216545 - AluY SINE Alu -2 309 2 421 242 138 96 chr1 164977318 164977632 -117216032 - L1ME LINE L1 -4864 1206 906 2206 112 0 3 chr1 164977632 164977926 -117215738 - AluSg SINE Alu -17 293 1 421 242 138 96 chr1 164977926 164978235 -117215429 - L1ME LINE L1 -5164 906 559 387 308 79 64 chr1 164978476 164978644 -117215020 - L1ME LINE L1 -5597 473 309 1997 146 125 13 chr1 164978644 164979029 -117214635 + MSTA LTR MaLR 1 428 0 387 308 79 64 chr1 164979029 164979228 -117214436 - L1ME LINE L1 -5761 309 93 407 151 11 0 chr1 164979230 164979242 -117214422 + (TA)n Simple_repeat Simple_repeat 2 12 -83 2289 135 28 0 chr1 164979242 164979597 -117214067 - MER47A DNA MER2_type -1 365 1 407 151 11 0 chr1 164979597 164979608 -117214056 + (TA)n Simple_repeat Simple_repeat 12 21 -74 1433 196 101 9 chr1 164979608 164979925 -117213739 - MER7A DNA MER2_type -1 345 2 407 151 11 0 chr1 164979925 164979993 -117213671 + (TA)n Simple_repeat Simple_repeat 21 95 0 275 343 89 31 chr1 164980563 164980855 -117212809 - L2 LINE L2 -1402 1912 1604 2131 106 3 20 chr1 164980966 164981259 -117212405 + AluSx SINE Alu 1 297 -15 450 0 0 0 chr1 164981259 164981309 -117212355 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 195 42 0 0 chr1 164981309 164981333 -117212331 + (GA)n Simple_repeat Simple_repeat 2 25 0 187 333 83 21 chr1 164981351 164981495 -117212169 - L2 LINE L2 -814 2500 2348 293 258 62 9 chr1 164983476 164983596 -117210068 + MIR3 SINE MIR 30 159 -49 24 53 0 0 chr1 164983934 164983972 -117209692 + AT_rich Low_complexity Low_complexity 1 38 0 246 32 0 0 chr1 164984718 164984749 -117208915 + (TC)n Simple_repeat Simple_repeat 1 31 0 1843 179 0 22 chr1 164984848 164985167 -117208497 - AluJo SINE Alu 0 312 1 2027 126 7 19 chr1 164985772 164986082 -117207582 + AluSx SINE Alu 1 306 -6 2920 213 80 26 chr1 164986532 164987842 -117205822 - L1ME1 LINE L1 -5 6230 4858 960 114 0 0 chr1 164987845 164987977 -117205687 - AluSg/x SINE Alu -5 307 176 1105 236 20 3 chr1 164987978 164988274 -117205390 - L1ME1 LINE L1 -1353 4862 4562 264 279 0 0 chr1 164988275 164988336 -117205328 + MER20 DNA MER1_type 2 62 -157 315 0 0 0 chr1 164988999 164989034 -117204630 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2395 92 0 0 chr1 164989166 164989471 -117204193 + AluSc SINE Alu 3 307 -2 1720 149 19 9 chr1 164989495 164989817 -117203847 - L1MB3 LINE L1 -33 6150 5826 852 191 117 11 chr1 164989823 164990011 -117203653 - AluJo SINE Alu -18 294 87 1985 180 18 20 chr1 164990023 164990461 -117203203 - L1MB3 LINE L1 -363 5820 5384 4354 238 82 33 chr1 164990464 164990663 -117203001 - L1ME1 LINE L1 -4578 1818 1630 962 211 17 0 chr1 164990663 164990838 -117202826 - MER45A DNA AcHobo 0 178 1 4354 238 82 33 chr1 164990838 164990906 -117202758 - L1ME1 LINE L1 -4766 1630 1567 2313 98 3 0 chr1 164990906 164991203 -117202461 - AluSp SINE Alu -15 298 1 4354 238 82 33 chr1 164991203 164991726 -117201938 - L1ME1 LINE L1 -4829 1567 1071 1942 104 66 24 chr1 164991726 164992015 -117201649 - AluSq SINE Alu -12 301 1 4354 238 82 33 chr1 164992015 164992921 -117200743 - L1ME1 LINE L1 -5325 1071 37 553 266 23 23 chr1 164992945 164993118 -117200546 + MER5B DNA MER1_type 2 174 -4 345 314 48 100 chr1 164993201 164993662 -117200002 - L2 LINE L2 -535 2779 2343 2090 57 4 4 chr1 164993823 164994087 -117199577 - AluY SINE Alu -9 302 39 895 311 84 15 chr1 164994507 164994899 -117198765 - L2 LINE L2 -343 2971 2553 1804 149 65 22 chr1 164995254 164995577 -117198087 + MER1B DNA MER1_type 1 337 0 478 304 129 0 chr1 164995775 164995946 -117197718 - MIR SINE MIR -4 258 66 1359 204 145 56 chr1 164997038 164997556 -117196108 - MLT1F1 LTR MaLR 0 555 1 834 158 28 17 chr1 164998901 164999078 -117194586 - MER96B DNA MER1_type? -238 179 1 1587 170 10 10 chr1 164999408 164999702 -117193962 - AluJb SINE Alu -14 298 5 2535 72 0 0 chr1 165000224 165000529 -117193135 - AluY SINE Alu -6 305 1 442 251 123 0 chr1 165000577 165000659 -117193005 + L1MC4 LINE L1 7817 7888 -154 249 98 0 0 chr1 165000659 165000700 -117192964 + (TG)n Simple_repeat Simple_repeat 2 42 0 442 251 123 0 chr1 165000700 165000812 -117192852 + L1MC4 LINE L1 7888 8035 -7 1775 160 3 24 chr1 165000977 165001271 -117192393 - AluJo SINE Alu -15 297 10 243 245 0 0 chr1 165001303 165001352 -117192312 - L1MC4 LINE L1 -360 7682 7634 258 32 0 0 chr1 165001896 165001927 -117191737 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 309 26 0 0 chr1 165001991 165002029 -117191635 + (CA)n Simple_repeat Simple_repeat 2 39 0 892 295 19 8 chr1 165002283 165002541 -117191123 - MIR SINE MIR 0 262 2 559 78 56 0 chr1 165002682 165002772 -117190892 - L1MA7 LINE L1 -5 6286 6192 24 0 0 0 chr1 165002772 165002796 -117190868 + AT_rich Low_complexity Low_complexity 1 24 0 192 298 0 0 chr1 165002847 165002894 -117190770 + L2 LINE L2 3006 3052 -220 34675 42 3 3 chr1 165003394 165008696 -117184968 - L1PA5 LINE L1 0 6154 855 290 213 13 13 chr1 165008801 165008876 -117184788 + MLT1K LTR MaLR 507 581 -7 21 0 0 0 chr1 165009044 165009065 -117184599 + AT_rich Low_complexity Low_complexity 1 21 0 4469 18 0 0 chr1 165009116 165009630 -117184034 - L1PA3 LINE L1 0 6155 5642 2628 28 3 0 chr1 165009630 165009957 -117183707 + L1PA3 LINE L1 5347 5674 -481 22 0 0 0 chr1 165014605 165014627 -117179037 + AT_rich Low_complexity Low_complexity 1 22 0 374 115 0 0 chr1 165015765 165015826 -117177838 - MER41B LTR ERV1 -88 547 487 705 218 0 123 chr1 165016071 165016291 -117177373 + MER77 LTR ERV1 1 193 -412 245 212 0 15 chr1 165016324 165016390 -117177274 + (TA)n Simple_repeat Simple_repeat 2 66 0 280 304 74 0 chr1 165018739 165018887 -117174777 - MER103 DNA DNA 0 166 8 1989 116 0 44 chr1 165019289 165019608 -117174056 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr1 165021850 165021871 -117171793 + AT_rich Low_complexity Low_complexity 1 21 0 438 338 98 59 chr1 165022517 165022875 -117170789 - L2 LINE L2 -6 3266 2895 31 68 0 0 chr1 165023037 165023096 -117170568 + AT_rich Low_complexity Low_complexity 1 59 0 203 204 41 0 chr1 165024176 165024225 -117169439 + MIR SINE MIR 103 153 -109 315 342 9 0 chr1 165025284 165025395 -117168269 - MIR3 SINE MIR -31 177 66 420 55 0 0 chr1 165027972 165028027 -117165637 + (GGA)n Simple_repeat Simple_repeat 2 56 0 27 0 0 0 chr1 165028389 165028416 -117165248 + GC_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr1 165028655 165028681 -117164983 + AT_rich Low_complexity Low_complexity 1 26 0 283 253 77 22 chr1 165029189 165029280 -117164384 + L2 LINE L2 3177 3272 0 4861 16 0 0 chr1 165029573 165030128 -117163536 + L1PA3 LINE L1 5597 6151 -4 258 152 379 0 chr1 165030172 165030238 -117163426 - MER31A LTR ERV1 -394 91 1 8612 174 49 48 chr1 165030244 165031069 -117162595 - MER31A-int LTR ERV1 -26 5853 5030 2094 103 3 7 chr1 165031069 165031359 -117162305 - AluSg SINE Alu -12 298 10 8612 174 49 48 chr1 165031359 165033045 -117160619 - MER31A-int LTR ERV1 -849 5030 3077 1340 178 129 99 chr1 165033119 165033540 -117160124 - MER31A-int LTR ERV1 -3426 1510 1064 1878 113 64 3 chr1 165033540 165033823 -117159841 + AluSx SINE Alu 1 300 -12 1340 178 129 99 chr1 165033823 165034007 -117159657 - MER31A-int LTR ERV1 -3872 1064 887 655 223 19 70 chr1 165034158 165034373 -117159291 - MER31A-int LTR ERV1 -4532 404 201 * 738 202 61 131 chr1 165034340 165034637 -117159027 - MER31A-int LTR ERV1 -4646 290 15 2659 143 54 4 chr1 165034673 165035135 -117158529 - MER31A LTR ERV1 0 485 1 2230 98 0 7 chr1 165035392 165035689 -117157975 - AluSq SINE Alu -18 295 1 2439 60 3 3 chr1 165036064 165036365 -117157299 + AluY SINE Alu 1 301 -10 280 327 68 23 chr1 165036925 165037145 -117156519 - HAL1 LINE L1 -901 1606 1377 22 0 0 0 chr1 165037345 165037367 -117156297 + AT_rich Low_complexity Low_complexity 1 22 0 6764 69 10 2 chr1 165037501 165038759 -117154905 - L1PA6 LINE L1 -3 6151 4890 1333 208 13 0 chr1 165039096 165039332 -117154332 - MER8 DNA MER2_type 0 239 1 318 250 22 0 chr1 165039359 165039451 -117154213 + L1MC4 LINE L1 6614 6707 -1335 1767 193 5 42 chr1 165039451 165039856 -117153808 - MLT1B LTR MaLR 0 390 1 27 62 0 0 chr1 165039885 165039933 -117153731 + AT_rich Low_complexity Low_complexity 1 48 0 2010 137 20 0 chr1 165040555 165040848 -117152816 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 165040939 165040961 -117152703 + AT_rich Low_complexity Low_complexity 1 22 0 618 290 50 32 chr1 165041142 165041363 -117152301 + MIR SINE MIR 20 244 -18 323 323 108 58 chr1 165041513 165042170 -117151494 - L2 LINE L2 -823 2491 1802 29 0 0 0 chr1 165042172 165042201 -117151463 + AT_rich Low_complexity Low_complexity 1 29 0 905 114 0 0 chr1 165042301 165042433 -117151231 - AluSg/x SINE Alu -1 309 178 191 389 54 25 chr1 165042556 165042759 -117150905 - L2 LINE L2 -2916 398 190 22 56 0 0 chr1 165042937 165042973 -117150691 + AT_rich Low_complexity Low_complexity 1 36 0 2175 111 3 0 chr1 165043069 165043357 -117150307 - AluSc SINE Alu -20 289 1 536 312 91 48 chr1 165043458 165043697 -117149967 + L1MC4a LINE L1 5349 5576 -2232 2782 134 20 7 chr1 165043697 165044153 -117149511 + L1PA16 LINE L1 5704 6165 -1 536 312 91 48 chr1 165044153 165044474 -117149190 + L1MC4a LINE L1 5576 5933 -1875 24 0 0 0 chr1 165045809 165045833 -117147831 + AT_rich Low_complexity Low_complexity 1 24 0 2232 175 3 3 chr1 165046540 165046905 -117146759 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1 165047241 165047264 -117146400 + AT_rich Low_complexity Low_complexity 1 23 0 1307 160 0 14 chr1 165047911 165048123 -117145541 - AluJo SINE Alu -18 294 86 2248 131 0 0 chr1 165048730 165049042 -117144622 - AluSx SINE Alu 0 312 1 761 279 22 98 chr1 165049222 165049710 -117143954 - LTR67 LTR ERVL -25 532 82 316 208 42 0 chr1 165050216 165050288 -117143376 - ERVL LTR ERVL -464 5300 5226 773 191 35 29 chr1 165050351 165050671 -117142993 - L1MC2 LINE L1 -2 6342 5921 1580 133 19 0 chr1 165051399 165051655 -117142009 - L1MC2 LINE L1 -365 5979 5719 1269 122 6 0 chr1 165051664 165051871 -117141793 - AluSg/x SINE Alu 0 335 128 1165 327 87 59 chr1 165052116 165053092 -117140572 - ERVL LTR ERVL -850 4914 3904 2158 148 0 0 chr1 165053092 165053402 -117140262 - AluSx SINE Alu -2 310 1 1165 327 87 59 chr1 165053402 165053492 -117140172 - ERVL LTR ERVL -1860 3904 3818 2082 122 3 6 chr1 165054141 165054452 -117139212 + AluSg SINE Alu 1 310 0 542 50 94 6 chr1 165055130 165055289 -117138375 + (TA)n Simple_repeat Simple_repeat 1 173 0 2201 107 3 0 chr1 165055304 165055594 -117138070 - AluSp SINE Alu -22 291 1 557 167 0 0 chr1 165055843 165055945 -117137719 - AluJb SINE Alu -3 309 208 1273 119 5 5 chr1 165056419 165056604 -117137060 - AluSp SINE Alu -11 302 118 219 282 16 3 chr1 165057072 165057191 -117136473 - MER5B DNA MER1_type -10 168 9 2122 86 10 43 chr1 165057228 165057531 -117136133 + AluSq SINE Alu 1 293 -20 21 0 0 0 chr1 165058071 165058092 -117135572 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 165058416 165058439 -117135225 + AT_rich Low_complexity Low_complexity 1 23 0 549 277 135 47 chr1 165058516 165058945 -117134719 + L1ME4a LINE L1 5407 5873 -248 1227 297 100 52 chr1 165058958 165060106 -117133558 + L1MEd LINE L1 2 1204 -4915 894 306 28 28 chr1 165060123 165060665 -117132999 + L1M4 LINE L1 3447 3988 -2158 741 245 92 59 chr1 165060678 165060951 -117132713 - LTR33A LTR ERVL -24 499 218 227 246 34 85 chr1 165060962 165061080 -117132584 - LTR33A LTR ERVL -406 117 6 45 62 0 0 chr1 165061185 165061265 -117132399 + AT_rich Low_complexity Low_complexity 1 80 0 333 309 21 0 chr1 165061963 165062060 -117131604 + MER81 DNA DNA 1 99 -15 987 128 6 11 chr1 165062644 165062824 -117130840 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 245 143 0 20 chr1 165062824 165062873 -117130791 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 987 182 11 0 chr1 165062873 165063049 -117130615 - AluJo SINE Alu -1 311 134 509 219 151 8 chr1 165063085 165063204 -117130460 + MER5B DNA MER1_type 2 137 -41 2293 118 22 19 chr1 165063285 165063648 -117130016 - THE1B LTR MaLR 0 364 1 392 208 118 62 chr1 165063776 165063920 -117129744 + MER5B DNA MER1_type 22 173 -5 850 132 0 0 chr1 165065033 165065147 -117128517 - AluJo SINE Alu -183 129 16 23 0 0 0 chr1 165065230 165065253 -117128411 + AT_rich Low_complexity Low_complexity 1 23 0 760 305 89 32 chr1 165065665 165066029 -117127635 + L1ME4a LINE L1 5554 5960 -161 516 135 22 0 chr1 165066029 165066118 -117127546 - L1MA6 LINE L1 0 6300 6210 760 305 89 32 chr1 165066118 165066290 -117127374 + L1ME4a LINE L1 5960 6121 0 1880 184 32 9 chr1 165067093 165067441 -117126223 - MLT1A1 LTR MaLR 0 365 10 378 320 117 18 chr1 165067757 165067979 -117125685 - MIR SINE MIR 0 262 19 7727 49 1 1 chr1 165068535 165070277 -117123387 + L1PA5 LINE L1 4409 6150 -4 720 176 127 7 chr1 165070360 165070502 -117123162 - FAM SINE Alu -16 159 1 231 132 0 0 chr1 165070575 165070613 -117123051 + L1M LINE L1 5390 5427 -743 14355 126 31 85 chr1 165070827 165073695 -117119969 - Tigger2 DNA MER2_type -2 2716 2 1581 186 44 3 chr1 165073697 165074015 -117119649 + MER46B DNA MER2_type 23 228 -8 572 226 131 12 chr1 165076348 165076516 -117117148 + MER5A DNA MER1_type 2 189 0 2272 98 0 0 chr1 165078292 165078589 -117115075 - AluSq SINE Alu -16 297 1 2048 138 7 0 chr1 165080810 165081107 -117112557 - AluSx SINE Alu -13 299 1 22 70 0 0 chr1 165081527 165081570 -117112094 + AT_rich Low_complexity Low_complexity 1 43 0 2018 145 3 0 chr1 165081858 165082154 -117111510 - AluSx SINE Alu -15 297 1 24 0 0 0 chr1 165082164 165082188 -117111476 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr1 165084779 165084822 -117108842 + AT_rich Low_complexity Low_complexity 1 43 0 521 187 0 37 chr1 165085173 165085280 -117108384 - AluJo SINE Alu -176 136 34 319 330 17 8 chr1 165085762 165085880 -117107784 + MIR SINE MIR 20 138 -124 180 266 94 0 chr1 165086077 165086141 -117107523 - L2 LINE L2 -1 3271 3202 1315 226 3 77 chr1 165087400 165087763 -117105901 - MLT1A2 LTR MaLR 0 374 39 333 308 7 41 chr1 165087930 165088058 -117105606 + LTR33 LTR ERVL 344 468 -53 2274 56 78 0 chr1 165088058 165088342 -117105322 + AluY SINE Alu 1 306 -5 333 308 7 41 chr1 165088342 165088359 -117105305 + LTR33 LTR ERVL 468 484 -37 927 160 0 0 chr1 165088434 165088578 -117105086 - MLT1A1 LTR MaLR 0 365 222 1498 154 22 55 chr1 165088579 165088852 -117104812 - AluJb SINE Alu -44 268 5 295 323 16 16 chr1 165089615 165089739 -117103925 + Charlie4 DNA MER1_type 1834 1957 -4 1269 65 0 24 chr1 165090158 165090327 -117103337 + U1 snRNA snRNA 1 165 0 548 131 77 195 chr1 165090756 165090977 -117102687 - AluJb SINE Alu -113 199 5 417 187 110 58 chr1 165091169 165091324 -117102340 + REP3 LTR ERV 1 163 -399 248 169 0 17 chr1 165091319 165091378 -117102286 - MER58 DNA MER1_type -101 2319 2262 * 2149 132 0 0 chr1 165091882 165092185 -117101479 - AluSx SINE Alu -9 303 1 208 259 86 17 chr1 165092202 165092318 -117101346 + L2 LINE L2 2400 2523 -791 1822 161 111 47 chr1 165092360 165092580 -117101084 + LOR1b LTR ERV1 1 205 -256 2524 57 0 10 chr1 165092580 165092894 -117100770 - AluY SINE Alu 0 311 1 1822 161 111 47 chr1 165092894 165093077 -117100587 + LOR1b LTR ERV1 205 430 -31 2069 104 4 0 chr1 165093579 165093903 -117099761 + AluSg SINE Alu 1 325 0 233 146 21 0 chr1 165094432 165094480 -117099184 + (TA)n Simple_repeat Simple_repeat 1 49 0 243 0 0 0 chr1 165094480 165094507 -117099157 + (CA)n Simple_repeat Simple_repeat 2 28 0 636 140 9 0 chr1 165094507 165094614 -117099050 - FLAM_C SINE Alu -33 110 3 23 33 0 0 chr1 165094617 165094647 -117099017 + AT_rich Low_complexity Low_complexity 1 30 0 617 283 46 5 chr1 165094756 165094975 -117098689 + L1MEc LINE L1 1566 1793 -4603 527 202 57 0 chr1 165094997 165095185 -117098479 + L1MEc LINE L1 1895 2133 -4263 2218 83 0 21 chr1 165095207 165095523 -117098141 + AluSx SINE Alu 2 311 0 254 265 59 10 chr1 165095534 165095636 -117098028 + L1ME LINE L1 5614 5720 -450 623 53 0 0 chr1 165096817 165096892 -117096772 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1018 156 0 59 chr1 165097358 165097544 -117096120 + AluSg/x SINE Alu 132 306 -4 1994 172 0 15 chr1 165097778 165098121 -117095543 - MER72 LTR ERV1 -221 501 164 2583 41 0 0 chr1 165098130 165098424 -117095240 - AluY SINE Alu -17 294 1 446 20 0 0 chr1 165098439 165098489 -117095175 - MER51D LTR ERV1 -2 655 606 291 85 0 0 chr1 165098796 165098843 -117094821 + (CA)n Simple_repeat Simple_repeat 1 47 0 561 317 46 41 chr1 165099204 165099643 -117094021 + L1MC4 LINE L1 7189 7629 -413 239 347 11 34 chr1 165099654 165099830 -117093834 - L1MC4 LINE L1 -411 7631 7460 246 143 0 0 chr1 165100986 165101035 -117092629 + (GA)n Simple_repeat Simple_repeat 1 49 0 266 163 38 12 chr1 165101436 165101516 -117092148 + CT-rich Low_complexity Low_complexity 2 83 0 225 0 0 0 chr1 165102608 165102633 -117091031 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 279 0 0 0 chr1 165102632 165102663 -117091001 + (GA)n Simple_repeat Simple_repeat 2 32 0 224 154 19 0 chr1 165104162 165104214 -117089450 + GA-rich Low_complexity Low_complexity 1 53 0 221 146 21 0 chr1 165105706 165105754 -117087910 + GA-rich Low_complexity Low_complexity 1 49 0 375 119 0 0 chr1 165107246 165107313 -117086351 + (GA)n Simple_repeat Simple_repeat 1 67 0 266 163 38 12 chr1 165107713 165107793 -117085871 + CT-rich Low_complexity Low_complexity 2 83 0 279 0 0 0 chr1 165108885 165108916 -117084748 + (CA)n Simple_repeat Simple_repeat 2 32 0 261 0 0 0 chr1 165108915 165108944 -117084720 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 224 154 19 0 chr1 165110443 165110495 -117083169 + GA-rich Low_complexity Low_complexity 1 53 0 333 0 0 0 chr1 165111992 165112029 -117081635 + (CA)n Simple_repeat Simple_repeat 2 38 0 16466 80 5 38 chr1 165114245 165115288 -117078376 + L1P LINE L1 875 1951 -4195 204 40 0 0 chr1 165115288 165115313 -117078351 + (TA)n Simple_repeat Simple_repeat 1 25 0 5519 41 9 0 chr1 165115313 165115966 -117077698 - L1PA4 LINE L1 -3 6152 5494 16466 80 5 38 chr1 165115966 165117354 -117076310 + L1P LINE L1 1949 3226 -2920 1874 149 0 0 chr1 165118072 165118347 -117075317 + AluSx SINE Alu 38 312 0 401 242 0 0 chr1 165121449 165121544 -117072120 + L1MB5 LINE L1 6071 6165 -9 427 272 7 14 chr1 165122491 165122638 -117071026 - MIR SINE MIR -21 241 96 197 81 0 27 chr1 165122791 165122828 -117070836 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1901 132 0 0 chr1 165122830 165123103 -117070561 - AluSg SINE Alu -37 273 1 1877 157 6 6 chr1 165124178 165124490 -117069174 - AluSx SINE Alu 0 312 1 2250 83 0 33 chr1 165124500 165124801 -117068863 - AluY SINE Alu -20 291 1 1068 206 5 5 chr1 165124884 165125088 -117068576 - AluJb SINE Alu -108 204 1 2679 102 85 7 chr1 165126921 165127332 -117066332 + MER51D LTR ERV1 213 655 -2 1962 168 8 26 chr1 165127334 165127685 -117065979 + MER72 LTR ERV1 157 501 -221 1027 156 0 59 chr1 165127919 165128105 -117065559 - AluSg/x SINE Alu -4 306 132 602 53 0 0 chr1 165128552 165128627 -117065037 - tRNA-Asn-AAC tRNA tRNA -2 75 1 239 298 48 0 chr1 165129720 165129824 -117063840 - L1MC/D LINE L1 -2066 5742 5634 544 212 30 0 chr1 165129856 165129988 -117063676 - L1MEc LINE L1 -4258 2305 2170 520 273 112 4 chr1 165130078 165130345 -117063319 - L1MEc LINE L1 -4540 2023 1728 28 61 0 0 chr1 165130450 165130499 -117063165 + AT_rich Low_complexity Low_complexity 1 49 0 306 234 56 47 chr1 165131562 165131669 -117061995 - L2 LINE L2 -798 2516 2409 2426 136 34 23 chr1 165131709 165132151 -117061513 + LTR49 LTR ERV1 1 447 -148 2827 106 29 18 chr1 165132157 165132600 -117061064 - LTR7 LTR ERV1 -2 448 1 2203 101 50 13 chr1 165132600 165132976 -117060688 - HERVH LTR ERV1 0 7713 7324 1217 163 0 5 chr1 165132976 165133197 -117060467 - HERVH LTR ERV1 -1894 5819 5600 4247 118 5 0 chr1 165133198 165133843 -117059821 - HERVH LTR ERV1 -2564 5149 4502 1121 202 95 0 chr1 165133843 165134096 -117059568 - L1MEc LINE L1 -6090 294 18 689 134 42 63 chr1 165134193 165134335 -117059329 - MER4B-int LTR ERV1 -5595 1003 865 283 196 0 0 chr1 165134335 165134386 -117059278 - LTR49 LTR ERV1 -282 313 263 2100 118 0 38 chr1 165134413 165134726 -117058938 - AluY SINE Alu -6 305 5 417 20 0 0 chr1 165134756 165134806 -117058858 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 840 160 57 10 chr1 165134836 165135088 -117058576 - MER4B-int LTR ERV1 -5761 837 506 1092 52 0 0 chr1 165135088 165135222 -117058442 - AluY SINE Alu 0 311 178 2465 99 77 35 chr1 165135222 165135677 -117057987 - MER4B-int LTR ERV1 -6124 474 1 327 127 0 0 chr1 165135679 165135734 -117057930 - MER4B LTR ERV1 0 610 556 492 209 167 65 chr1 165136612 165136827 -117056837 - MLT1E2 LTR MaLR -330 296 60 1797 206 35 31 chr1 165136830 165136868 -117056796 + L1M4 LINE L1 2300 2336 -3810 3265 143 0 4 chr1 165136868 165137365 -117056299 + LOR1a LTR ERV1 3 497 0 1797 206 35 31 chr1 165137365 165137806 -117055858 + L1M4 LINE L1 2336 2781 -3365 1335 213 70 0 chr1 165138521 165138636 -117055028 + AluJo SINE Alu 1 107 -205 219 103 0 0 chr1 165138636 165138675 -117054989 + (CA)n Simple_repeat Simple_repeat 2 40 0 1335 213 70 0 chr1 165138675 165138803 -117054861 + AluJo SINE Alu 107 261 -51 492 217 0 0 chr1 165139052 165139158 -117054506 - AluJo/FRAM SINE Alu -1 311 206 1918 102 20 0 chr1 165139159 165139413 -117054251 - AluY SINE Alu -52 259 1 896 161 7 20 chr1 165139413 165139562 -117054102 - AluJb SINE Alu -165 147 1 462 179 9 9 chr1 165140219 165140325 -117053339 - L1MB8 LINE L1 -9 6169 6064 181 280 151 43 chr1 165140712 165140805 -117052859 - MIR SINE MIR -61 147 45 440 263 212 15 chr1 165141754 165141952 -117051712 + MIR SINE MIR 5 241 -21 1991 145 23 3 chr1 165142228 165142532 -117051132 + AluSx SINE Alu 1 310 -2 239 283 75 9 chr1 165142536 165142642 -117051022 + MIR SINE MIR 34 146 -116 556 272 94 43 chr1 165143086 165143321 -117050343 + MIR SINE MIR 6 252 -10 233 303 83 37 chr1 165143779 165143888 -117049776 + L3 LINE CR1 1462 1575 -2 191 307 89 30 chr1 165143887 165143988 -117049676 - L2 LINE L2 -15 3257 3151 * 2009 119 153 21 chr1 165144002 165144380 -117049284 - MSTA LTR MaLR 0 428 1 2097 135 3 3 chr1 165144458 165144755 -117048909 - AluSx SINE Alu -15 297 1 1953 156 0 38 chr1 165145080 165145394 -117048270 + AluSx SINE Alu 1 302 -10 1341 141 0 5 chr1 165145807 165145999 -117047665 - AluJb SINE Alu -121 191 1 2618 233 75 94 chr1 165146075 165146778 -117046886 - L1MEc LINE L1 -4759 1637 922 1760 169 18 0 chr1 165146778 165147080 -117046584 - AluSx SINE Alu 0 307 1 2618 233 75 94 chr1 165147080 165147500 -117046164 - L1MEc LINE L1 -5474 922 495 1412 128 0 0 chr1 165147500 165147704 -117045960 - L1MC1 LINE L1 -5 6328 6125 2618 233 75 94 chr1 165147704 165147730 -117045934 - L1MEc LINE L1 -5901 495 470 1833 133 34 77 chr1 165147730 165148082 -117045582 - MER1B DNA MER1_type 0 337 1 2618 233 75 94 chr1 165148082 165148564 -117045100 - L1MEc LINE L1 -5926 470 35 365 331 78 13 chr1 165148604 165148786 -117044878 + MIR SINE MIR 3 198 -63 1638 183 7 14 chr1 165150947 165151237 -117042427 - AluJo SINE Alu -24 288 1 2020 152 7 0 chr1 165152034 165152337 -117041327 + AluSx SINE Alu 1 305 -7 1504 138 0 0 chr1 165154041 165154258 -117039406 + AluSg/x SINE Alu 93 309 -1 442 343 17 17 chr1 165155220 165155392 -117038272 - MER5B DNA MER1_type 0 178 7 1964 104 48 57 chr1 165155791 165156107 -117037557 + AluSp SINE Alu 1 313 0 210 37 0 0 chr1 165156110 165156137 -117037527 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 204 382 104 7 chr1 165156348 165156492 -117037172 + MIR3 SINE MIR 44 201 -7 987 206 110 83 chr1 165157741 165158207 -117035457 - MER66A LTR ERV1 0 481 100 2294 132 3 0 chr1 165158253 165158602 -117035062 - MER66A-int LTR ERV1 0 6676 6327 1067 216 94 89 chr1 165158644 165158831 -117034833 - MER66-int LTR ERV1 -1643 6113 5928 2096 116 10 42 chr1 165158831 165159142 -117034522 + AluSg SINE Alu 1 301 -9 1067 216 94 89 chr1 165159142 165159412 -117034252 - MER66-int LTR ERV1 -1828 5928 4548 1835 168 0 7 chr1 165160017 165160308 -117033356 + AluJo SINE Alu 1 289 -23 232 241 35 9 chr1 165160318 165160434 -117033230 + (TA)n Simple_repeat Simple_repeat 2 120 0 21 0 0 0 chr1 165160987 165161008 -117032656 + AT_rich Low_complexity Low_complexity 1 21 0 2186 116 0 13 chr1 165161479 165161782 -117031882 + AluSg SINE Alu 1 299 -11 1726 167 0 21 chr1 165162282 165162594 -117031070 + AluSx SINE Alu 1 306 0 860 291 109 30 chr1 165162703 165163178 -117030486 + LTR33 LTR ERVL 1 513 -8 2417 65 0 16 chr1 165164440 165164749 -117028915 - AluSc SINE Alu -5 304 1 1874 179 3 22 chr1 165164812 165165131 -117028533 - AluSq SINE Alu 0 313 1 4793 117 55 6 chr1 165165155 165165981 -117027683 - L1PA16 LINE L1 -8 6158 5293 198 342 75 25 chr1 165166190 165166310 -117027354 + L3 LINE CR1 1373 1498 -79 241 218 18 0 chr1 165166356 165166411 -117027253 + (TA)n Simple_repeat Simple_repeat 1 56 0 1403 166 29 16 chr1 165166481 165166788 -117026876 - L1MA5 LINE L1 -910 5236 4926 * 5022 153 56 6 chr1 165166778 165167268 -117026396 + L1MA5 LINE L1 5255 5719 -581 306 0 0 0 chr1 165167268 165167302 -117026362 + (CA)n Simple_repeat Simple_repeat 2 35 0 5022 153 56 6 chr1 165167302 165167807 -117025857 + L1MA5 LINE L1 5719 6300 0 194 320 13 26 chr1 165168212 165168290 -117025374 + L2 LINE L2 2894 2970 -302 610 272 76 27 chr1 165169236 165169460 -117024204 - MIR SINE MIR 0 262 28 24 0 0 0 chr1 165169627 165169651 -117024013 + AT_rich Low_complexity Low_complexity 1 24 0 1945 136 51 20 chr1 165170712 165171065 -117022599 + MLT1A1 LTR MaLR 2 365 0 208 70 47 0 chr1 165171811 165171854 -117021810 + (TTTAA)n Simple_repeat Simple_repeat 1 45 0 25 31 0 0 chr1 165171859 165171891 -117021773 + AT_rich Low_complexity Low_complexity 1 32 0 618 204 7 51 chr1 165171928 165172065 -117021599 + MER5B DNA MER1_type 1 131 -47 434 171 66 53 chr1 165172428 165172580 -117021084 + L1ME4a LINE L1 5764 5917 -204 2117 138 0 0 chr1 165172832 165173130 -117020534 + AluSg SINE Alu 1 298 -12 568 267 175 5 chr1 165173176 165173382 -117020282 - MIR SINE MIR -15 247 7 992 164 17 69 chr1 165174763 165174994 -117018670 + MER20 DNA MER1_type 1 219 0 655 243 22 22 chr1 165175010 165175195 -117018469 + MIR SINE MIR 68 252 -10 24 53 0 0 chr1 165175403 165175441 -117018223 + AT_rich Low_complexity Low_complexity 1 38 0 509 296 74 67 chr1 165175945 165176215 -117017449 + L2 LINE L2 2997 3268 -4 241 193 102 45 chr1 165177815 165177903 -117015761 + L2 LINE L2 3221 3313 0 2175 61 10 24 chr1 165177966 165178290 -117015374 + AluY SINE Alu 1 311 0 257 311 57 19 chr1 165178320 165178426 -117015238 + MIR SINE MIR 107 216 -46 181 327 53 27 chr1 165178469 165178619 -117015045 - MIR SINE MIR 0 262 109 2856 119 28 0 chr1 165178796 165179153 -117014511 - L1PB3 LINE L1 -2 6152 5779 270 0 0 0 chr1 165179153 165179183 -117014481 + (TG)n Simple_repeat Simple_repeat 2 31 0 2856 119 28 0 chr1 165179183 165179262 -117014402 - L1PB3 LINE L1 -375 5779 5704 312 27 0 0 chr1 165179830 165179867 -117013797 + (CA)n Simple_repeat Simple_repeat 2 38 0 627 115 0 0 chr1 165381247 165381334 -116812330 - AluSq/x SINE Alu -192 120 34 980 128 0 7 chr1 165381341 165381482 -116812182 - AluSq/x SINE Alu -172 140 1 301 255 25 115 chr1 165381490 165381702 -116811962 - L1MEd LINE L1 -4173 2137 1954 1790 168 0 29 chr1 165381702 165382011 -116811653 - AluJo SINE Alu -12 300 1 301 255 25 115 chr1 165382011 165382076 -116811588 - L1MEd LINE L1 -4356 1954 1885 1507 109 0 0 chr1 165382076 165382277 -116811387 - AluSp SINE Alu -5 308 108 820 275 99 44 chr1 165382510 165383508 -116810156 - L1MEd LINE L1 -4695 1615 534 653 270 52 70 chr1 165384140 165384507 -116809157 + L1MC4a LINE L1 5538 5899 -1909 2455 134 37 37 chr1 165384507 165384941 -116808723 - Tigger2a DNA MER2_type 0 434 1 653 270 52 70 chr1 165384941 165384958 -116808706 + L1MC4a LINE L1 5899 5915 -1893 1930 158 3 6 chr1 165385047 165385358 -116808306 + AluJb SINE Alu 1 310 -2 351 330 0 0 chr1 165385608 165385714 -116807950 + MIR3 SINE MIR 98 203 -5 245 269 48 55 chr1 165386293 165386438 -116807226 - L1ME4a LINE L1 -4 6117 5974 222 37 0 0 chr1 165386440 165386467 -116807197 + (CA)n Simple_repeat Simple_repeat 2 28 0 306 326 67 67 chr1 165386469 165386574 -116807090 - L1MC4a LINE L1 -1874 5934 5830 2402 72 0 20 chr1 165386574 165386880 -116806784 - AluY SINE Alu -11 300 1 306 326 67 67 chr1 165386880 165387013 -116806651 - L1MC4a LINE L1 -1977 5831 5696 998 246 21 8 chr1 165387068 165387304 -116806360 - MIR SINE MIR -22 240 2 487 276 30 35 chr1 165387309 165387512 -116806152 - L1MC4a LINE L1 -2190 5618 5417 258 32 0 0 chr1 165387724 165387755 -116805909 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 261 229 43 0 chr1 165388886 165388956 -116804708 + MER5A DNA MER1_type 26 98 -91 292 270 101 0 chr1 165389224 165389313 -116804351 + MER63A DNA MER1_type 106 203 -7 2105 137 21 33 chr1 165389725 165389957 -116803707 - MLT1B LTR MaLR 0 593 360 2276 98 13 70 chr1 165389957 165390217 -116803447 - THE1B LTR MaLR 0 364 132 2100 146 3 0 chr1 165390217 165390525 -116803139 + AluSx SINE Alu 1 309 -3 2276 98 13 70 chr1 165390525 165390650 -116803014 - THE1B LTR MaLR -232 132 1 2105 137 21 33 chr1 165390650 165390810 -116802854 - MLT1B LTR MaLR -233 360 1 25 0 0 0 chr1 165391633 165391658 -116802006 + AT_rich Low_complexity Low_complexity 1 25 0 1699 177 0 24 chr1 165391982 165392276 -116801388 - AluJb SINE Alu -25 287 1 207 385 84 0 chr1 165393279 165393362 -116800302 + L2 LINE L2 3151 3240 -32 1962 121 22 61 chr1 165393381 165393744 -116799920 + MLT2D LTR ERVL 1 349 -65 207 0 0 0 chr1 165393744 165393767 -116799897 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 479 239 55 9 chr1 165397400 165397509 -116796155 + MIR SINE MIR 26 139 -123 188 65 0 32 chr1 165397513 165397544 -116796120 + (TAA)n Simple_repeat Simple_repeat 2 31 0 229 257 14 14 chr1 165397789 165397859 -116795805 + MIR SINE MIR 193 262 0 2005 151 3 25 chr1 165398733 165399050 -116794614 - AluJo SINE Alu -2 310 1 443 252 88 96 chr1 165399343 165399708 -116793956 + MLT1I LTR MaLR 40 401 -8 542 307 92 14 chr1 165401100 165401318 -116792346 - MIR SINE MIR -8 254 20 279 336 53 18 chr1 165401864 165401977 -116791687 + L2 LINE L2 3197 3313 0 207 248 14 83 chr1 165402192 165402337 -116791327 - L2 LINE L2 -1480 1834 1700 741 188 0 0 chr1 165404246 165404379 -116789285 + FLAM_A SINE Alu 1 133 0 708 130 51 51 chr1 165404396 165404534 -116789130 + L1MC2 LINE L1 6207 6344 0 1895 157 0 26 chr1 165405721 165406033 -116787631 - AluJo SINE Alu -8 304 1 723 250 5 31 chr1 165406059 165406251 -116787413 + MIR SINE MIR 31 217 -45 810 320 118 52 chr1 165406291 165406675 -116786989 - L3 LINE CR1 -388 1189 832 252 0 0 0 chr1 165406675 165406703 -116786961 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 810 320 118 52 chr1 165406703 165407141 -116786523 - L3 LINE CR1 -745 832 313 363 306 63 0 chr1 165407889 165408000 -116785664 + L2 LINE L2 3155 3272 0 321 273 55 52 chr1 165409980 165410143 -116783521 - MIR3 SINE MIR -52 156 30 385 301 168 5 chr1 165410646 165410855 -116782809 - L3 LINE CR1 -98 1479 1237 513 156 10 10 chr1 165410881 165410972 -116782692 + MLT1B LTR MaLR 1 92 -294 1928 144 147 13 chr1 165410972 165411346 -116782318 - MSTA LTR MaLR 0 428 5 6903 169 135 20 chr1 165411350 165412830 -116780834 - MSTA-int LTR MaLR 0 1651 1 2060 134 137 13 chr1 165412830 165413211 -116780453 - MSTA LTR MaLR 0 428 1 1473 153 23 36 chr1 165413211 165413518 -116780146 + MLT1B LTR MaLR 88 390 0 189 74 0 0 chr1 165414021 165414048 -116779616 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 321 222 156 0 chr1 165414287 165414377 -116779287 - FAM SINE Alu 0 175 72 1030 184 0 12 chr1 165414377 165414545 -116779119 - AluJo SINE Alu -146 166 1 996 164 41 0 chr1 165414548 165414719 -116778945 - AluSg/x SINE Alu -8 304 127 2148 123 0 22 chr1 165414733 165415050 -116778614 - AluSg SINE Alu 0 310 1 213 256 177 25 chr1 165419185 165419311 -116774353 + MIR SINE MIR 31 168 -62 670 226 34 0 chr1 165420395 165420599 -116773065 - L1MD3 LINE L1 -14 7981 7771 647 101 11 0 chr1 165420599 165420688 -116772976 - 5S rRNA rRNA -31 90 1 596 231 7 7 chr1 165420691 165420834 -116772830 - L1MD3 LINE L1 -214 7781 7639 2134 230 101 12 chr1 165420836 165421497 -116772167 - MER50 LTR ERV1 -2 732 13 1106 235 13 26 chr1 165421497 165421728 -116771936 - L1MC4a LINE L1 -329 7479 7251 4083 132 30 33 chr1 165421728 165422457 -116771207 + LTR8A LTR ERV1 1 727 0 1106 235 13 26 chr1 165422457 165422536 -116771128 - L1MC4a LINE L1 -557 7251 7173 * 1518 237 96 59 chr1 165422533 165423250 -116770414 - L1MC4a LINE L1 -1811 5997 5254 367 314 71 33 chr1 165423252 165424373 -116769291 - L1MC4a LINE L1 -893 5253 4018 1202 116 20 30 chr1 165424384 165424583 -116769081 - MER4B LTR ERV1 -6 604 408 5494 143 21 53 chr1 165424583 165425584 -116768080 - LTR5 LTR ERVK 0 969 1 412 303 83 22 chr1 165426990 165427267 -116766397 + LTR16C LTR ERVL 186 479 -12 2309 98 3 0 chr1 165427865 165428172 -116765492 - AluSp SINE Alu -5 308 1 445 249 267 15 chr1 165428327 165428531 -116765133 - MIR SINE MIR -8 254 4 24 0 0 0 chr1 165428621 165428645 -116765019 + AT_rich Low_complexity Low_complexity 1 24 0 398 305 61 12 chr1 165428664 165428828 -116764836 - L1M4 LINE L1 -960 5186 5015 1205 303 83 76 chr1 165428957 165429879 -116763785 - L1M4 LINE L1 -1315 4831 3903 1605 326 129 35 chr1 165429881 165429932 -116763732 - L1M4 LINE L1 -2302 5428 5383 1981 187 33 78 chr1 165429932 165430463 -116763201 + LTR40a LTR ERVL 1 509 -10 1667 176 3 20 chr1 165430463 165430764 -116762900 - AluJo SINE Alu -16 296 1 1605 326 129 35 chr1 165430771 165430992 -116762672 - L1M4 LINE L1 -2347 5383 5184 1713 148 3 48 chr1 165430992 165431303 -116762361 + AluSx SINE Alu 1 297 -15 1605 326 129 35 chr1 165431303 165432620 -116761044 - L1M4 LINE L1 -2546 5184 2131 7289 105 8 7 chr1 165432628 165433798 -116759866 - L1MA1 LINE L1 -4 6298 5127 469 234 75 75 chr1 165434134 165434322 -116759342 - MIR3 SINE MIR -6 202 15 256 99 84 56 chr1 165434585 165434656 -116759008 - L1M2c LINE L1 -4548 2241 2169 2532 45 0 0 chr1 165436016 165436326 -116757338 - AluY SINE Alu 0 311 2 227 345 58 36 chr1 165436577 165436716 -116756948 + MER5A DNA MER1_type 48 189 0 266 224 9 140 chr1 165436849 165436956 -116756708 - MIR SINE MIR -97 111 19 539 239 223 0 chr1 165437229 165437413 -116756251 + MIR SINE MIR 23 247 -15 349 263 179 6 chr1 165437407 165437563 -116756101 - MIR SINE MIR -2 260 78 * 382 311 65 8 chr1 165437688 165437857 -116755807 + MIR SINE MIR 8 184 -27 203 261 0 87 chr1 165439199 165439291 -116754373 - MIR SINE MIR -55 207 124 2188 230 88 6 chr1 165439423 165439936 -116753728 - MLT1H1 LTR MaLR 0 555 1 289 247 76 143 chr1 165439962 165440290 -116753374 - MLT1H1-int LTR MaLR -30 1341 1036 398 260 91 37 chr1 165440490 165440786 -116752878 - MLT1H1-int LTR MaLR -928 443 1 2337 227 39 6 chr1 165440786 165441301 -116752363 - MLT1H1 LTR MaLR 0 555 24 455 292 90 39 chr1 165442193 165442371 -116751293 + MIR3 SINE MIR 22 208 0 4478 256 112 28 chr1 165442440 165444351 -116749313 - L2 LINE L2 0 3313 1234 924 265 69 18 chr1 165444700 165445021 -116748643 - MLT1I LTR MaLR -18 391 63 181 373 29 10 chr1 165446246 165446348 -116747316 - MIR SINE MIR -95 167 64 428 200 0 0 chr1 165446690 165446765 -116746899 + MER116 DNA Mariner 1 75 -5 661 313 50 47 chr1 165447056 165447439 -116746225 + L2 LINE L2 1662 2045 -1269 326 290 57 8 chr1 165447447 165447571 -116746093 + L2 LINE L2 3141 3270 -2 1059 207 5 5 chr1 165449202 165449434 -116744230 - L1MA9 LINE L1 -25 6274 6044 311 314 65 59 chr1 165449536 165449705 -116743959 + MIR SINE MIR 66 235 -27 218 345 0 0 chr1 165449710 165449794 -116743870 + MIR SINE MIR 173 256 -6 636 293 48 10 chr1 165449937 165450145 -116743519 + LTR16C LTR ERVL 273 488 -3 638 265 97 78 chr1 165450263 165450584 -116743080 - L2 LINE L2 0 3313 2987 293 259 62 0 chr1 165450954 165451035 -116742629 - MIR SINE MIR -60 202 117 210 241 287 46 chr1 165451011 165451119 -116742545 - MIR3 SINE MIR -67 141 8 * 354 200 0 0 chr1 165452118 165452188 -116741476 + tRNA-Glu-GAG tRNA tRNA 2 71 -4 461 277 0 19 chr1 165453240 165453395 -116740269 + U1 snRNA snRNA 4 155 -10 2196 71 0 0 chr1 165454583 165454879 -116738785 - AluY SINE Alu -15 296 1 183 191 0 24 chr1 165454973 165455015 -116738649 + MIR SINE MIR 170 210 -52 329 188 14 14 chr1 165456962 165457031 -116736633 - tRNA-Gly-GGG tRNA tRNA -3 71 3 400 187 0 27 chr1 165457865 165457940 -116735724 + tRNA-Gly-GGG tRNA tRNA 1 73 -1 3559 95 95 34 chr1 165458001 165458620 -116735044 - MER51D LTR ERV1 0 657 1 220 206 29 15 chr1 165459049 165459117 -116734547 + (TA)n Simple_repeat Simple_repeat 1 69 0 588 227 0 0 chr1 165459225 165459335 -116734329 + FLAM_A SINE Alu 4 113 -29 2274 101 3 0 chr1 165459335 165459643 -116734021 - AluSx SINE Alu -3 309 1 423 378 23 14 chr1 165459825 165460042 -116733622 + MIR SINE MIR 42 260 -2 31 44 0 0 chr1 165460043 165460088 -116733576 + AT_rich Low_complexity Low_complexity 1 45 0 747 216 66 0 chr1 165460116 165460319 -116733345 - L1ME2 LINE L1 -88 6074 5855 1748 160 16 16 chr1 165460387 165460699 -116732965 - AluJb SINE Alu 0 312 1 892 284 61 41 chr1 165461176 165461706 -116731958 - L2 LINE L2 -290 2982 2445 1950 83 0 8 chr1 165463408 165463674 -116729990 + AluY SINE Alu 33 296 -15 625 156 0 2 chr1 165464001 165464249 -116729415 + AluJb SINE Alu 3 298 -14 638 222 150 36 chr1 165464314 165464618 -116729046 - L1ME2 LINE L1 -511 5651 5313 22 0 0 0 chr1 165467407 165467429 -116726235 + GC_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr1 165468008 165468050 -116725614 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 165468247 165468281 -116725383 + GC_rich Low_complexity Low_complexity 1 34 0 464 242 58 65 chr1 165468339 165468509 -116725155 - L1ME2 LINE L1 -810 5336 5167 1602 173 10 7 chr1 165468509 165468804 -116724860 - AluJb SINE Alu -16 296 1 464 242 58 65 chr1 165468804 165468893 -116724771 - L1ME2 LINE L1 -979 5167 5079 2286 92 0 16 chr1 165468893 165469208 -116724456 + AluSg SINE Alu 1 310 0 1729 164 7 10 chr1 165469270 165469580 -116724084 - AluJb SINE Alu -3 309 1 692 206 23 0 chr1 165469580 165469711 -116723953 - AluJo SINE Alu -177 135 2 26 30 0 0 chr1 165469719 165469752 -116723912 + AT_rich Low_complexity Low_complexity 1 33 0 452 308 103 5 chr1 165469764 165469959 -116723705 + L2 LINE L2 3100 3313 0 406 259 36 9 chr1 165470036 165470148 -116723516 + MLT1I LTR MaLR 277 391 -18 1018 130 23 23 chr1 165470368 165470545 -116723119 - AluJo SINE Alu -52 260 84 499 291 43 0 chr1 165470598 165470739 -116722925 + L2 LINE L2 2371 2517 -797 206 250 0 0 chr1 165471095 165471143 -116722521 + L2 LINE L2 3265 3312 -1 214 313 8 47 chr1 165471260 165471388 -116722276 + CT-rich Low_complexity Low_complexity 2 124 0 203 381 57 0 chr1 165471628 165471733 -116721931 - L2 LINE L2 -5 3308 3198 769 197 0 16 chr1 165472231 165472476 -116721188 + CT-rich Low_complexity Low_complexity 1 240 0 3356 222 55 16 chr1 165472918 165474403 -116719261 - L1MC2 LINE L1 -5 6619 4992 908 283 86 16 chr1 165474403 165474788 -116718876 - L1MC2 LINE L1 -5996 430 19 320 315 25 12 chr1 165474796 165474958 -116718706 - L1MB8 LINE L1 -25 6153 5990 1827 148 3 3 chr1 165475285 165475582 -116718082 - AluSq SINE Alu -4 309 13 6662 109 5 9 chr1 165475597 165476570 -116717094 + LTR5 LTR ERVK 1 969 0 803 265 139 30 chr1 165476811 165477267 -116716397 - MLT1E2 LTR MaLR 0 654 111 605 244 32 113 chr1 165477500 165477845 -116715819 - MLT1E2-int LTR MaLR -98 1273 957 1336 171 27 105 chr1 165477888 165478298 -116715366 - L1ME2 LINE L1 -263 5901 5524 222 229 66 16 chr1 165479241 165479302 -116714362 - MIR3 SINE MIR -7 201 138 548 233 105 51 chr1 165479903 165480167 -116713497 + LTR33 LTR ERVL 29 275 -248 507 48 0 0 chr1 165480683 165480746 -116712918 - AluY SINE Alu -246 64 2 22 35 0 0 chr1 165480749 165480778 -116712886 + AT_rich Low_complexity Low_complexity 1 29 0 2369 257 26 58 chr1 165480778 165481353 -116712311 + L1ME2 LINE L1 3863 4392 -1754 2274 119 3 0 chr1 165481353 165481663 -116712001 + AluY SINE Alu 1 311 0 2369 257 26 58 chr1 165481663 165482122 -116711542 + L1ME2 LINE L1 4392 4864 -1282 189 0 0 0 chr1 165482164 165482185 -116711479 + (TG)n Simple_repeat Simple_repeat 2 22 0 234 150 0 0 chr1 165482236 165482276 -116711388 + (TA)n Simple_repeat Simple_repeat 2 41 0 2128 249 96 29 chr1 165482287 165482656 -116711008 + L1ME2 LINE L1 5299 5642 -522 4863 83 12 22 chr1 165482656 165483322 -116710342 - PABL_A LTR ERV1 0 660 2 2128 249 96 29 chr1 165483322 165483751 -116709913 + L1ME2 LINE L1 5642 6151 -13 1002 279 107 8 chr1 165483776 165484260 -116709404 + L1ME2 LINE L1 4329 4860 -1286 592 171 34 11 chr1 165485077 165485253 -116708411 + (TA)n Simple_repeat Simple_repeat 1 180 0 1464 99 19 19 chr1 165485272 165485484 -116708180 - L1PA6 LINE L1 -34 6120 5909 899 277 125 30 chr1 165485513 165486445 -116707219 + L1ME2 LINE L1 4862 5892 -272 2511 45 3 45 chr1 165486445 165486759 -116706905 + AluY SINE Alu 1 301 -10 899 277 125 30 chr1 165486759 165486794 -116706870 + L1ME2 LINE L1 5892 5922 -242 1789 163 10 0 chr1 165488101 165488408 -116705256 + AluSg SINE Alu 1 310 0 372 293 7 14 chr1 165488576 165488723 -116704941 + MIR SINE MIR 96 241 -21 342 211 42 42 chr1 165489726 165489821 -116703843 - L1MB5 LINE L1 -9 6165 6071 1025 211 5 5 chr1 165492407 165492611 -116701053 + AluJb SINE Alu 1 204 -108 2318 82 0 26 chr1 165492694 165493000 -116700664 + AluY SINE Alu 1 298 -13 1854 154 6 6 chr1 165493006 165493318 -116700346 + AluSx SINE Alu 1 312 0 1843 158 13 0 chr1 165494395 165494699 -116698965 + AluSg SINE Alu 1 308 -2 424 272 7 14 chr1 165494861 165495008 -116698656 + MIR SINE MIR 96 241 -21 401 242 0 0 chr1 165495958 165496053 -116697611 - L1MB5 LINE L1 -9 6165 6071 1777 164 0 0 chr1 165499145 165499414 -116694250 - AluSx SINE Alu -6 306 38 16475 78 5 41 chr1 165500132 165501519 -116692145 - L1P LINE L1 -2920 3226 1966 5472 46 1 0 chr1 165501519 165502171 -116691493 + L1PA4 LINE L1 5494 6146 -9 16475 78 5 41 chr1 165502171 165503225 -116690439 - L1P LINE L1 -4180 1966 875 450 0 0 0 chr1 165505442 165505492 -116688172 + (TG)n Simple_repeat Simple_repeat 1 50 0 221 146 21 0 chr1 165506998 165507046 -116686618 + CT-rich Low_complexity Low_complexity 1 49 0 408 67 0 0 chr1 165508540 165508566 -116685098 + (TG)n Simple_repeat Simple_repeat 1 86 0 408 67 0 0 chr1 165508566 165508626 -116685038 + (TG)n Simple_repeat Simple_repeat 2 61 0 287 150 38 12 chr1 165509706 165509786 -116683878 + GA-rich Low_complexity Low_complexity 2 83 0 453 62 0 0 chr1 165510192 165510257 -116683407 + (TCTCTG)n Simple_repeat Simple_repeat 2 66 0 251 317 10 10 chr1 165511411 165511512 -116682152 + L1MC4 LINE L1 7460 7560 -482 531 306 66 36 chr1 165511653 165512016 -116681648 - L1MC4 LINE L1 -480 7562 7189 266 65 0 22 chr1 165512378 165512424 -116681240 + (TG)n Simple_repeat Simple_repeat 1 45 0 236 268 31 31 chr1 165513521 165513618 -116680046 - L1MC5 LINE L1 -50 7911 7815 243 188 72 0 chr1 165513677 165513746 -116679918 - MLT2D LTR ERVL -75 440 367 604 281 21 10 chr1 165513771 165513963 -116679701 - MLT2D LTR ERVL -220 194 1 964 231 50 57 chr1 165513963 165514365 -116679299 - L1M4 LINE L1 -889 5257 4859 1626 149 0 26 chr1 165514665 165514933 -116678731 + AluSq SINE Alu 50 310 -3 326 250 218 32 chr1 165514933 165515241 -116678423 + L1MEc LINE L1 983 1347 -5216 355 280 102 55 chr1 165515294 165515694 -116677970 + L1MEc LINE L1 1265 1683 -4701 258 235 0 0 chr1 165515691 165515742 -116677922 + L1 LINE L1 4195 4245 -1901 * 275 154 15 0 chr1 165515760 165515825 -116677839 + (CA)n Simple_repeat Simple_repeat 2 67 0 7004 65 5 3 chr1 165515947 165517514 -116676150 + L1PA6 LINE L1 4583 6151 -3 3635 261 65 32 chr1 165517514 165518930 -116674734 - L1M1 LINE L1 -4985 2580 18 21 0 0 0 chr1 165519034 165519055 -116674609 + AT_rich Low_complexity Low_complexity 1 21 0 353 266 92 40 chr1 165519138 165519311 -116674353 + MER5A DNA MER1_type 7 188 -1 355 267 20 27 chr1 165521032 165521178 -116672486 - MIR3 SINE MIR -32 176 32 203 374 58 0 chr1 165527172 165527311 -116666353 + MIR SINE MIR 20 166 -96 584 274 100 35 chr1 165527403 165527633 -116666031 - MIR SINE MIR -15 247 3 383 255 0 59 chr1 165528475 165528577 -116665087 + L1MC4 LINE L1 6608 6703 -1339 224 232 14 29 chr1 165528577 165528646 -116665018 + (TA)n Simple_repeat Simple_repeat 2 69 0 868 164 0 0 chr1 165528760 165528900 -116664764 - AluSq/x SINE Alu -171 142 3 2573 162 34 0 chr1 165529397 165529842 -116663822 - LOR1b LTR ERV1 -1 460 1 533 176 0 0 chr1 165529842 165529933 -116663731 - LOR1b-int LTR ERV1 0 8120 8030 * 1932 79 4 0 chr1 165529932 165530185 -116663479 - LOR1-int LTR ERV1 -2056 6064 5811 * 5494 192 62 15 chr1 165530174 165531553 -116662111 - LOR1-int LTR ERV1 -1050 4896 3570 555 185 0 19 chr1 165531553 165531724 -116661940 + FLAM_C SINE Alu 38 206 0 3042 128 25 73 chr1 165531734 165532295 -116661369 - LOR1-int LTR ERV1 -4058 4062 3529 * 3880 96 10 33 chr1 165532287 165532487 -116661177 - LOR1-int LTR ERV1 -4515 3605 3402 1523 160 59 21 chr1 165532487 165532775 -116660889 - AluSx SINE Alu -13 299 1 3880 96 10 33 chr1 165532775 165533186 -116660478 - LOR1-int LTR ERV1 -4718 3402 3008 1294 313 46 21 chr1 165533428 165533949 -116659715 - L1MCc LINE L1 -5859 564 31 1449 203 46 61 chr1 165534814 165535209 -116658455 - MLT1B LTR MaLR -1 389 1 1174 103 6 6 chr1 165535237 165535412 -116658252 - AluSp SINE Alu -2 311 137 410 289 14 7 chr1 165535799 165535941 -116657723 - L2 LINE L2 -821 2493 2351 908 177 28 22 chr1 165536369 165536550 -116657114 + MER58 DNA MER1_type 2238 2419 -1 4628 158 14 7 chr1 165536715 165537751 -116655913 + L1PA16 LINE L1 5018 6059 -107 228 132 0 0 chr1 165537751 165537789 -116655875 + L1PB4 LINE L1 6095 6132 -24 1816 237 54 18 chr1 165537904 165538520 -116655144 + L1M4 LINE L1 3038 3675 -2471 2132 65 0 0 chr1 165539291 165539567 -116654097 - AluY SINE Alu -35 276 1 1772 153 7 3 chr1 165539806 165540113 -116653551 + AluSx SINE Alu 5 312 0 495 127 0 0 chr1 165540243 165540314 -116653350 - tRNA-Gly-GGG tRNA tRNA -3 71 1 2077 101 6 29 chr1 165541185 165541501 -116652163 - L1PA11 LINE L1 -1 6173 5865 2091 100 4 0 chr1 165541513 165541822 -116651842 + AluSg SINE Alu 1 310 0 2215 81 3 0 chr1 165541822 165542129 -116651535 + AluSp SINE Alu 1 308 0 310 229 34 157 chr1 165542183 165542339 -116651325 - L1MDa LINE L1 -3956 2584 2471 2356 80 0 3 chr1 165542339 165542651 -116651013 - AluY SINE Alu 0 311 1 310 229 34 157 chr1 165542651 165542756 -116650908 - L1MDa LINE L1 -4069 2471 2355 2246 60 0 14 chr1 165543009 165543340 -116650324 - AluY SINE Alu 0 327 1 1772 149 14 0 chr1 165543645 165543763 -116649901 + AluJb SINE Alu 5 120 -192 315 0 0 0 chr1 165543763 165543798 -116649866 + (CA)n Simple_repeat Simple_repeat 2 36 0 1772 149 14 0 chr1 165543798 165543955 -116649709 + AluJb SINE Alu 120 284 -28 1535 215 53 30 chr1 165544408 165544841 -116648823 + LTR47B LTR ERVL 1 443 0 1020 118 41 30 chr1 165545342 165545511 -116648153 - Tigger7 DNA MER2_type -1 2586 2416 * 2078 167 78 51 chr1 165545509 165545591 -116648073 - Tigger7 DNA MER2_type -2025 462 384 1996 128 0 7 chr1 165545591 165545889 -116647775 - AluSx SINE Alu -16 296 1 2078 167 78 51 chr1 165545889 165545942 -116647722 - Tigger7 DNA MER2_type -2103 384 334 2420 69 0 0 chr1 165545942 165546248 -116647416 - AluY SINE Alu -5 306 1 2324 111 39 29 chr1 165546258 165546673 -116646991 - L1MA4A LINE L1 -5 6298 5880 2078 167 78 51 chr1 165546673 165546975 -116646689 - Tigger7 DNA MER2_type -2161 326 1 336 206 41 14 chr1 165547703 165547776 -116645888 + L2 LINE L2 3239 3313 0 310 257 0 27 chr1 165548822 165548896 -116644768 - tRNA-Gly-GGG tRNA tRNA -1 73 2 453 141 0 0 chr1 165549931 165550002 -116643662 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 364 331 36 7 chr1 165551751 165551890 -116641774 + L1ME LINE L1 5678 5820 -301 439 264 0 19 chr1 165553299 165553454 -116640210 - U1 snRNA snRNA -10 155 4 342 0 0 0 chr1 165554167 165554205 -116639459 + (TC)n Simple_repeat Simple_repeat 1 38 0 2081 79 0 4 chr1 165554205 165554483 -116639181 - AluSc SINE Alu -32 277 1 279 0 0 0 chr1 165554493 165554524 -116639140 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1215 255 69 41 chr1 165554715 165555498 -116638166 - L1MEc LINE L1 -4258 2138 1288 327 209 183 26 chr1 165555498 165555613 -116638051 + FLAM_C SINE Alu 1 133 0 415 297 38 24 chr1 165555624 165555833 -116637831 - L1MEc LINE L1 -5114 1282 1071 215 238 16 0 chr1 165555864 165555927 -116637737 + (CTTG)n Simple_repeat Simple_repeat 1 64 0 1008 218 92 25 chr1 165556257 165556573 -116637091 - MER46C DNA MER2_type 0 338 2 653 313 131 38 chr1 165557246 165557774 -116635890 - L3 LINE CR1 -234 1343 767 302 233 32 93 chr1 165558825 165558989 -116634675 - MIR SINE MIR -61 147 21 285 271 115 0 chr1 165559778 165559874 -116633790 - L3 LINE CR1 -1211 366 260 298 371 52 39 chr1 165560337 165560569 -116633095 - L2 LINE L2 -176 3096 2862 277 284 15 0 chr1 165560699 165560766 -116632898 + L2 LINE L2 3238 3305 -8 2194 243 109 8 chr1 165561244 165561895 -116631769 + L1MCa LINE L1 43 759 -5667 232 208 14 14 chr1 165561897 165561969 -116631695 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 797 200 14 2 chr1 165561990 165562200 -116631464 - MER2 DNA MER2_type 0 345 85 2198 174 49 23 chr1 165562200 165562713 -116630951 + pTR5 LTR ERV1 744 1269 -1169 826 114 8 0 chr1 165563647 165563770 -116629894 + FLAM_C SINE Alu 1 124 -19 1706 132 51 7 chr1 165564200 165564496 -116629168 - AluSx SINE Alu -3 309 1 2057 124 0 9 chr1 165564776 165565091 -116628573 + AluJb SINE Alu 1 312 0 453 141 0 0 chr1 165566801 165566872 -116626792 - tRNA-Gly-GGG tRNA tRNA -3 71 1 310 257 0 27 chr1 165567908 165567982 -116625682 + tRNA-Gly-GGG tRNA tRNA 2 73 -1 336 206 41 14 chr1 165569028 165569101 -116624563 - L2 LINE L2 0 3313 3239 2078 167 78 51 chr1 165569829 165570131 -116623533 + Tigger7 DNA MER2_type 1 293 -2194 2324 111 39 29 chr1 165570131 165570546 -116623118 + L1MA4A LINE L1 5880 6298 -5 2398 72 0 0 chr1 165570556 165570861 -116622803 + AluY SINE Alu 1 305 -6 2078 167 78 51 chr1 165570861 165570914 -116622750 + Tigger7 DNA MER2_type 301 351 -2136 1996 128 0 7 chr1 165570914 165571212 -116622452 + AluSx SINE Alu 1 296 -16 2078 167 78 51 chr1 165571212 165571294 -116622370 + Tigger7 DNA MER2_type 351 462 -2025 1020 118 41 30 chr1 165571292 165571461 -116622203 + Tigger7 DNA MER2_type 2316 2486 -1 * 1535 215 53 30 chr1 165571962 165572395 -116621269 - LTR47B LTR ERVL 0 443 1 1772 149 14 0 chr1 165572848 165573005 -116620659 - AluJb SINE Alu -28 284 120 351 0 0 0 chr1 165573005 165573044 -116620620 + (TG)n Simple_repeat Simple_repeat 2 40 0 1772 149 14 0 chr1 165573044 165573162 -116620502 - AluJb SINE Alu -192 120 5 2343 46 0 30 chr1 165573466 165573770 -116619894 + AluY SINE Alu 1 295 -16 582 218 74 102 chr1 165574358 165574574 -116619090 + MER63A DNA MER1_type 1 210 0 214 352 111 29 chr1 165575512 165575853 -116617811 - L2 LINE L2 -660 2654 2286 207 88 0 0 chr1 165577121 165577155 -116616509 + (T)n Simple_repeat Simple_repeat 1 34 0 339 302 29 22 chr1 165577319 165577461 -116616203 - MIR SINE MIR -59 149 28 380 319 173 18 chr1 165577543 165577872 -116615792 + L3 LINE CR1 530 909 -668 189 298 43 0 chr1 165577945 165577992 -116615672 + L3 LINE CR1 1023 1071 -506 389 299 80 0 chr1 165578004 165578141 -116615523 + MIR SINE MIR 98 245 -17 362 278 295 43 chr1 165578151 165578317 -116615347 + L3 LINE CR1 1069 1192 -385 2146 88 32 3 chr1 165578317 165578602 -116615062 - AluSc SINE Alu -14 295 3 362 278 295 43 chr1 165578602 165578784 -116614880 + L3 LINE CR1 1192 1505 -72 192 113 151 57 chr1 165578967 165579020 -116614644 + L2 LINE L2 3256 3313 0 2173 128 0 3 chr1 165579029 165579333 -116614331 - AluSx SINE Alu -9 303 1 1232 223 21 71 chr1 165580214 165580706 -116612958 - MLT2B3 LTR ERVL -14 540 1 306 304 104 0 chr1 165582447 165582562 -116611102 + HAL1b LINE L1 785 911 -437 540 275 111 37 chr1 165582618 165582807 -116610857 + MIR SINE MIR 36 238 -24 269 306 28 0 chr1 165582968 165583040 -116610624 - MIR SINE MIR -77 131 58 218 353 24 12 chr1 165583264 165583349 -116610315 - MIR SINE MIR -92 116 31 398 0 0 0 chr1 165585939 165585985 -116607679 - L1PA5 LINE L1 -2476 3670 3625 13896 38 17 37 chr1 165585985 165588501 -116605163 + L1PA5 LINE L1 3647 6154 0 902 168 71 5 chr1 165588518 165588714 -116604950 - MER6B DNA MER2_type 0 210 2 367 247 11 43 chr1 165588765 165588858 -116604806 - L2 LINE L2 0 3313 3224 2157 116 3 3 chr1 165589056 165589348 -116604316 - AluSc SINE Alu -17 292 1 802 169 0 0 chr1 165589735 165589859 -116603805 - FLAM_C SINE Alu -18 125 2 1879 141 14 3 chr1 165590395 165590678 -116602986 - AluJb SINE Alu -15 297 12 619 166 4 115 chr1 165592096 165592331 -116601333 + L1ME1 LINE L1 2063 2271 -4125 693 226 7 0 chr1 165592347 165592484 -116601180 - MER58A DNA MER1_type 0 138 1 3435 208 92 8 chr1 165592487 165593549 -116600115 + L1ME1 LINE L1 2231 3381 -2834 256 114 0 23 chr1 165593538 165593582 -116600082 + L1MB7 LINE L1 5439 5481 -703 * 7645 27 7 5 chr1 165593593 165594944 -116598720 - L1PA3 LINE L1 -3 6152 4801 3899 26 4 0 chr1 165594944 165595441 -116598223 + L1PA3 LINE L1 4313 4811 -1335 1734 161 9 92 chr1 165595444 165595571 -116598093 + L1MB7 LINE L1 5479 5615 -563 2100 113 0 7 chr1 165595571 165595879 -116597785 + AluSg SINE Alu 1 306 0 1734 161 9 92 chr1 165595879 165595979 -116597685 + L1MB7 LINE L1 5615 5722 -456 2207 104 3 0 chr1 165595979 165596278 -116597386 + AluSx SINE Alu 1 300 -12 1734 161 9 92 chr1 165596278 165596421 -116597243 + L1MB7 LINE L1 5722 5814 -364 1486 163 41 48 chr1 165596421 165596581 -116597083 - AluJb SINE Alu -20 292 133 258 32 0 0 chr1 165596581 165596612 -116597052 + (TG)n Simple_repeat Simple_repeat 2 32 0 1486 163 41 48 chr1 165596612 165596745 -116596919 - AluJb SINE Alu -179 133 1 1734 161 9 92 chr1 165596745 165596804 -116596860 + L1MB7 LINE L1 5814 5876 -302 246 128 26 0 chr1 165596820 165596859 -116596805 + Alu SINE Alu 86 125 -177 876 168 0 50 chr1 165596905 165597084 -116596580 + L1MB7 LINE L1 5865 6034 -150 1437 0 0 0 chr1 165597084 165597239 -116596425 - AluYa5 SINE Alu -2 309 155 664 180 27 7 chr1 165597239 165597389 -116596275 + L1MB8 LINE L1 6021 6173 -5 3124 216 25 28 chr1 165597390 165597831 -116595833 + L1ME1 LINE L1 3362 3802 -2413 1841 168 10 0 chr1 165597831 165598122 -116595542 - AluJo SINE Alu -16 296 3 3124 216 25 28 chr1 165598122 165598582 -116595082 + L1ME1 LINE L1 3802 4261 -1954 24271 148 32 25 chr1 165598623 165600668 -116592996 + L1PA10 LINE L1 1 2030 -4453 2558 71 0 0 chr1 165600668 165600978 -116592686 - AluY SINE Alu -1 310 1 24271 148 32 25 chr1 165600978 165605273 -116588391 + L1PA10 LINE L1 2030 6483 0 2973 220 13 34 chr1 165605268 165606087 -116587577 + L1ME1 LINE L1 5383 6184 -51 * 403 218 39 58 chr1 165605985 165606141 -116587523 + L1MA10 LINE L1 6249 6401 -2 * 2148 98 0 35 chr1 165606150 165606465 -116587199 + AluSc SINE Alu 1 304 -5 2052 123 3 7 chr1 165606479 165606772 -116586892 + AluSx SINE Alu 1 292 -20 435 100 0 0 chr1 165607359 165607429 -116586235 + (GA)n Simple_repeat Simple_repeat 2 71 0 576 40 0 0 chr1 165608043 165608118 -116585546 + (GA)n Simple_repeat Simple_repeat 2 76 0 2116 90 4 4 chr1 165608119 165608396 -116585268 - AluSx SINE Alu -35 277 1 872 253 96 4 chr1 165608890 165609119 -116584545 - MIR SINE MIR -8 254 5 22 0 0 0 chr1 165609188 165609210 -116584454 + AT_rich Low_complexity Low_complexity 1 22 0 450 223 86 36 chr1 165610246 165610385 -116583279 - MIR SINE MIR -111 151 6 224 233 151 0 chr1 165610383 165610456 -116583208 - MIR SINE MIR -78 184 101 * 345 311 83 23 chr1 165610708 165610840 -116582824 + L2 LINE L2 3133 3272 0 1930 165 0 0 chr1 165611165 165611462 -116582202 - AluJb SINE Alu -15 297 1 428 241 204 0 chr1 165611633 165611770 -116581894 + MIR3 SINE MIR 42 206 -2 189 149 21 64 chr1 165612331 165612378 -116581286 + MIR SINE MIR 162 206 -56 2319 115 0 0 chr1 165612463 165612775 -116580889 + AluSx SINE Alu 1 312 0 2757 194 57 41 chr1 165614356 165615266 -116578398 - L1MD1 LINE L1 0 6242 5348 2331 91 0 0 chr1 165615266 165615564 -116578100 - AluSg SINE Alu -12 298 1 2757 194 57 41 chr1 165615564 165615751 -116577913 - L1MD1 LINE L1 -894 5348 5165 2233 85 7 3 chr1 165615751 165616044 -116577620 - AluSx SINE Alu -17 295 2 2757 194 57 41 chr1 165616044 165616206 -116577458 - L1MD1 LINE L1 -1077 5165 5007 2362 122 0 0 chr1 165616206 165616518 -116577146 - AluSx SINE Alu 0 312 1 2757 194 57 41 chr1 165616518 165617002 -116576662 - L1MD1 LINE L1 -1235 5007 4318 568 200 33 33 chr1 165617014 165617134 -116576530 - FLAM_A SINE Alu -13 120 1 710 273 65 76 chr1 165617212 165617463 -116576201 - L1ME LINE L1 -4876 1206 954 1652 124 70 12 chr1 165617463 165617722 -116575942 - AluSx SINE Alu -14 298 25 710 273 65 76 chr1 165617722 165617788 -116575876 - L1ME LINE L1 -5128 954 889 2078 126 13 0 chr1 165617788 165618089 -116575575 - AluSx SINE Alu -7 305 1 710 273 65 76 chr1 165618089 165618768 -116574896 - L1ME LINE L1 -5193 889 275 248 247 0 37 chr1 165618971 165619052 -116574612 - L1ME LINE L1 -5665 405 328 342 258 31 0 chr1 165619181 165619278 -116574386 - L1ME LINE L1 -5922 148 49 26 0 0 0 chr1 165619633 165619659 -116574005 + AT_rich Low_complexity Low_complexity 1 26 0 1868 107 72 4 chr1 165620014 165620277 -116573387 - AluSx SINE Alu -16 296 16 22 56 0 0 chr1 165620445 165620481 -116573183 + AT_rich Low_complexity Low_complexity 1 36 0 2398 83 0 0 chr1 165620582 165620884 -116572780 - AluY SINE Alu -9 302 1 443 291 51 8 chr1 165621046 165621163 -116572501 + L2 LINE L2 3151 3272 0 590 248 173 20 chr1 165621243 165621445 -116572219 - MIR SINE MIR -25 237 5 2348 98 0 3 chr1 165621628 165621925 -116571739 + AluSx SINE Alu 1 296 -16 928 145 21 5 chr1 165621969 165622155 -116571509 - L1MA7 LINE L1 -1614 4532 4344 5103 159 42 13 chr1 165622158 165623870 -116569794 + L1MA7 LINE L1 4537 6287 -4 24 53 0 0 chr1 165623867 165623905 -116569759 + AT_rich Low_complexity Low_complexity 1 38 0 * 25 0 0 0 chr1 165623969 165623994 -116569670 + AT_rich Low_complexity Low_complexity 1 25 0 837 175 0 7 chr1 165623994 165624131 -116569533 - AluJo SINE Alu -176 136 1 34 0 0 0 chr1 165624588 165624622 -116569042 + AT_rich Low_complexity Low_complexity 1 34 0 920 53 0 0 chr1 165624628 165624741 -116568923 - L1PA7 LINE L1 -2 6152 6040 405 114 29 29 chr1 165624741 165624804 -116568860 - AluS SINE Alu -14 287 222 1825 127 0 7 chr1 165625668 165625943 -116567721 - AluSx SINE Alu -39 273 1 362 248 76 9 chr1 165626269 165626374 -116567290 - MER20B DNA MER1_type -3 780 669 331 300 9 45 chr1 165626383 165626433 -116567231 + L1MCa LINE L1 2006 2056 -4370 1851 103 22 48 chr1 165626433 165626744 -116566920 - AluSx SINE Alu -9 303 1 331 300 9 45 chr1 165626744 165626803 -116566861 + L1MCa LINE L1 2056 2111 -4315 820 258 119 104 chr1 165626823 165626955 -116566709 - MER20B DNA MER1_type -290 493 364 682 168 30 15 chr1 165626955 165627086 -116566578 - FLAM_C SINE Alu 0 133 1 820 258 119 104 chr1 165627086 165627156 -116566508 - MER20B DNA MER1_type -419 364 297 1947 122 0 14 chr1 165627156 165627467 -116566197 + AluJb SINE Alu 1 307 0 820 258 119 104 chr1 165627467 165627652 -116566012 - MER20B DNA MER1_type -486 297 93 2876 96 73 2 chr1 165627652 165628088 -116565576 - L1PA11 LINE L1 0 6174 5708 820 258 119 104 chr1 165628088 165628177 -116565487 - MER20B DNA MER1_type -690 93 7 332 140 0 18 chr1 165628380 165628437 -116565227 + L2 LINE L2 3257 3312 -1 2191 110 3 3 chr1 165628531 165628841 -116564823 + AluSq SINE Alu 1 310 -3 664 125 0 0 chr1 165628851 165628939 -116564725 + AluS SINE Alu 3 90 -223 180 0 0 0 chr1 165629321 165629341 -116564323 + HSATII Satellite Satellite 120 139 -31 2037 109 6 26 chr1 165629520 165629831 -116563833 - L1PA11 LINE L1 -4 6170 5866 1910 264 120 16 chr1 165630427 165631196 -116562468 + L1ME2 LINE L1 5307 6155 -9 189 74 0 0 chr1 165631212 165631239 -116562425 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 286 161 145 0 chr1 165631699 165631761 -116561903 - tRNA-His-CAC tRNA tRNA -3 72 2 1052 25 0 0 chr1 165632186 165632308 -116561356 + AluY SINE Alu 2 123 -188 417 20 0 0 chr1 165632308 165632358 -116561306 + (GAAA)n Simple_repeat Simple_repeat 1 50 0 1298 58 6 0 chr1 165632361 165632535 -116561129 + AluY SINE Alu 127 301 -10 1383 138 5 0 chr1 165632546 165632770 -116560894 + AluJb SINE Alu 78 302 -10 342 190 0 0 chr1 165633393 165633451 -116560213 + tRNA-Asn-AAC tRNA tRNA 5 62 -15 363 323 36 54 chr1 165633777 165634106 -116559558 - L1MC4a LINE L1 -390 5780 5541 1118 149 6 0 chr1 165634199 165634380 -116559284 - AluJb SINE Alu -48 264 83 281 131 16 0 chr1 165634986 165635047 -116558617 + CT-rich Low_complexity Low_complexity 1 62 0 1621 211 31 44 chr1 165635723 165636174 -116557490 + MER65A LTR ERV1 1 445 0 1106 177 5 0 chr1 165636551 165636754 -116556910 - AluJo SINE Alu -24 288 85 523 250 82 138 chr1 165637068 165637511 -116556153 + L1M4c LINE L1 815 1206 -5178 225 0 0 0 chr1 165637511 165637536 -116556128 + (TA)n Simple_repeat Simple_repeat 2 26 0 523 250 82 138 chr1 165637536 165637796 -116555868 + L1M4c LINE L1 1206 1479 -4905 23 33 0 0 chr1 165638351 165638381 -116555283 + AT_rich Low_complexity Low_complexity 1 30 0 704 231 111 116 chr1 165638381 165638981 -116554683 - L1ME3A LINE L1 -36 6134 5536 2514 201 100 18 chr1 165639323 165639934 -116553730 - MER67B LTR ERV1 0 661 1 22 0 0 0 chr1 165640051 165640073 -116553591 + AT_rich Low_complexity Low_complexity 1 22 0 2183 107 0 3 chr1 165640330 165640640 -116553024 - AluSq SINE Alu -2 311 3 1296 209 36 36 chr1 165640783 165641151 -116552513 + MLT2B1 LTR ERVL 1 374 -40 210 37 0 0 chr1 165641151 165641178 -116552486 + (TG)n Simple_repeat Simple_repeat 2 28 0 1296 209 36 36 chr1 165641178 165641217 -116552447 + MLT2B1 LTR ERVL 374 411 -3 302 279 47 0 chr1 165641578 165641664 -116552000 - L1MC4 LINE L1 -1339 6703 6614 216 0 0 0 chr1 165641672 165641696 -116551968 + (GA)n Simple_repeat Simple_repeat 2 25 0 538 198 0 0 chr1 165641696 165641802 -116551862 - AluJo SINE Alu -205 107 2 4829 60 0 0 chr1 165641817 165642412 -116551252 + L1PA7 LINE L1 5550 6144 -10 470 264 36 41 chr1 165642547 165642638 -116551026 + L1M4c LINE L1 1742 1832 -4731 2023 120 3 3 chr1 165642638 165642939 -116550725 + AluSx SINE Alu 7 307 -5 470 264 36 41 chr1 165642939 165643067 -116550597 + L1M4c LINE L1 1832 1960 -4603 548 188 53 0 chr1 165643089 165643286 -116550378 + L1M4c LINE L1 2062 2309 -4254 265 289 48 0 chr1 165643315 165643419 -116550245 + L1MC/D LINE L1 5634 5742 -2066 2291 46 0 3 chr1 165643419 165643775 -116549889 - AluY SINE Alu 0 355 1 185 305 38 9 chr1 165644311 165644416 -116549248 - L2 LINE L2 -4 3309 3202 638 40 0 0 chr1 165644859 165644934 -116548730 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1497 168 20 14 chr1 165645653 165645950 -116547714 - AluJb SINE Alu -5 307 9 1479 177 0 21 chr1 165646108 165646396 -116547268 - AluJo SINE Alu -24 288 7 1492 167 14 48 chr1 165646535 165646849 -116546815 - AluJo SINE Alu 0 304 1 26 0 0 0 chr1 165646856 165646882 -116546782 + AT_rich Low_complexity Low_complexity 1 26 0 925 198 0 0 chr1 165647879 165648036 -116545628 - FRAM SINE Alu -9 157 1 207 182 0 0 chr1 165648429 165648462 -116545202 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1408 163 7 28 chr1 165648801 165649083 -116544581 + AluJb SINE Alu 21 296 -16 589 215 32 57 chr1 165649086 165649244 -116544420 + AluJo/FRAM SINE Alu 137 290 -12 1828 116 0 0 chr1 165649606 165649865 -116543799 + AluSx SINE Alu 41 299 -13 836 182 27 32 chr1 165650075 165650245 -116543419 + AluJo SINE Alu 127 297 -15 1579 185 33 10 chr1 165650245 165650361 -116543303 + AluJo SINE Alu 3 115 -197 197 32 0 32 chr1 165650361 165650392 -116543272 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1579 185 33 10 chr1 165650392 165650577 -116543087 + AluJo SINE Alu 115 311 -1 836 182 27 32 chr1 165650577 165650593 -116543071 + AluJo SINE Alu 297 312 0 2027 128 0 0 chr1 165650741 165651046 -116542618 + AluSx SINE Alu 3 307 -5 556 171 22 153 chr1 165651367 165651595 -116542069 + MER4B-int LTR ERV1 5722 5919 -839 186 133 0 0 chr1 165651635 165651665 -116541999 + (TTTTC)n Simple_repeat Simple_repeat 3 32 0 1617 227 49 10 chr1 165651846 165652285 -116541379 + LTR56 LTR ERV1 12 437 0 316 219 81 109 chr1 165652285 165652429 -116541235 + L1ME2 LINE L1 5746 5884 -280 3911 138 15 62 chr1 165652429 165653154 -116540510 + LTR8 LTR ERV1 1 691 0 316 219 81 109 chr1 165653154 165653219 -116540445 + L1ME2 LINE L1 5884 5949 -215 395 233 52 26 chr1 165653699 165653815 -116539849 + Charlie4 DNA MER1_type 1839 1957 -4 2099 92 10 0 chr1 165653829 165654123 -116539541 + AluSx SINE Alu 8 304 -8 1517 6 0 0 chr1 165654533 165654697 -116538967 + U1 snRNA snRNA 1 164 -1 228 230 115 44 chr1 165655166 165655279 -116538385 + REP3 LTR ERV 1 121 -441 735 253 62 37 chr1 165655290 165655558 -116538106 + L1ME2 LINE L1 5801 6085 -99 518 294 78 39 chr1 165655611 165655866 -116537798 + HAL1b LINE L1 935 1199 -149 2136 221 37 104 chr1 165656506 165657230 -116536434 - LTR8 LTR ERV1 0 691 16 582 271 84 44 chr1 165657286 165657511 -116536153 + MIR SINE MIR 2 235 -27 2216 79 7 0 chr1 165657907 165658198 -116535466 + AluSx SINE Alu 3 295 -17 1025 254 43 77 chr1 165658231 165658761 -116534903 - MER39 LTR ERV1 0 707 1 893 168 6 34 chr1 165658834 165659013 -116534651 + AluSx SINE Alu 1 174 -138 607 62 0 0 chr1 165659089 165659169 -116534495 - HY3 scRNA scRNA -1 100 21 611 42 0 0 chr1 165660591 165660663 -116533001 - tRNA-Gln-CAG tRNA tRNA -3 72 1 288 77 0 0 chr1 165660942 165660981 -116532683 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 867 90 96 34 chr1 165661165 165661343 -116532321 - L1MA8 LINE L1 -4 6287 6099 2081 103 7 0 chr1 165661346 165661637 -116532027 - AluSc SINE Alu -16 293 1 954 206 14 18 chr1 165661694 165661913 -116531751 - AluJo SINE Alu -94 218 1 4712 207 17 28 chr1 165661917 165662037 -116531627 - L1P LINE L1 -2253 3893 3773 1842 155 0 0 chr1 165662037 165662334 -116531330 - AluSx SINE Alu -9 303 7 4712 207 17 28 chr1 165662334 165662621 -116531043 - L1P LINE L1 -2373 3773 3484 1646 173 3 26 chr1 165662621 165662933 -116530731 - AluJb SINE Alu -7 305 1 4712 207 17 28 chr1 165662933 165663672 -116529992 - L1P LINE L1 -2662 3484 2759 5132 127 24 12 chr1 165663677 165664482 -116529182 + L1PA15 LINE L1 5344 6157 -8 315 239 62 35 chr1 165664487 165664600 -116529064 + L1MEc LINE L1 2200 2315 -4081 1637 173 0 10 chr1 165664669 165664958 -116528706 + AluJb SINE Alu 9 294 -18 1174 165 21 5 chr1 165665102 165665296 -116528368 + AluJo SINE Alu 85 281 -31 215 59 0 29 chr1 165665332 165665366 -116528298 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr1 165665543 165665571 -116528093 + AT_rich Low_complexity Low_complexity 1 28 0 1899 80 26 70 chr1 165665706 165666018 -116527646 + AluSq SINE Alu 1 298 -15 1529 88 13 9 chr1 165667495 165667721 -116525943 - AluSq SINE Alu -6 307 81 1032 177 0 76 chr1 165667759 165667822 -116525842 + MER20 DNA MER1_type 1 67 -152 1644 148 60 0 chr1 165667822 165668105 -116525559 - AluJb SINE Alu -12 300 1 1032 177 0 76 chr1 165668105 165668278 -116525386 + MER20 DNA MER1_type 67 219 0 780 164 8 15 chr1 165669180 165669314 -116524350 + FLAM_C SINE Alu 1 133 0 2507 101 6 43 chr1 165669441 165670154 -116523510 - SVA Other Other -575 945 483 1208 61 0 57 chr1 165670172 165670418 -116523246 - SVA Other Other -520 866 635 5663 64 21 59 chr1 165670446 165671346 -116522318 - SVA Other Other -520 866 1 1333 206 36 0 chr1 165671449 165671701 -116521963 + MIR SINE MIR 1 261 -1 425 330 94 10 chr1 165671751 165672039 -116521625 - L2 LINE L2 -1452 1862 1551 1026 120 33 0 chr1 165672044 165672194 -116521470 + L1M3f LINE L1 3 157 -5171 6672 157 12 45 chr1 165872257 165873555 -116320109 + THE1-int LTR MaLR 109 1363 -217 23414 160 34 31 chr1 165873655 165877051 -116316613 - L1P3 LINE L1 -875 5586 2036 2485 76 0 0 chr1 165877051 165877354 -116316310 + AluY SINE Alu 1 303 -8 23414 160 34 31 chr1 165877354 165879388 -116314276 - L1P3 LINE L1 -4425 2036 10 3104 214 28 24 chr1 165879473 165879896 -116313768 - L1MEc LINE L1 -1986 4229 3809 1841 168 10 0 chr1 165879896 165880187 -116313477 + AluJo SINE Alu 3 296 -16 3104 214 28 24 chr1 165880187 165880628 -116313036 - L1MEc LINE L1 -2406 3809 3362 1515 168 13 32 chr1 165880629 165880944 -116312720 - L1MB8 LINE L1 -5 6173 5865 254 119 24 0 chr1 165880988 165881030 -116312634 - FLAM_A SINE Alu -6 127 85 1727 164 9 90 chr1 165881046 165881105 -116312559 - L1MB8 LINE L1 -302 5876 5814 1464 164 13 77 chr1 165881105 165881417 -116312247 + AluJb SINE Alu 1 292 -20 1727 164 9 90 chr1 165881417 165881560 -116312104 - L1MB8 LINE L1 -364 5814 5661 2151 117 3 0 chr1 165881560 165881859 -116311805 - AluSx SINE Alu -12 300 1 1727 164 9 90 chr1 165881859 165881959 -116311705 - L1MB8 LINE L1 -517 5661 5615 2120 106 0 7 chr1 165881959 165882267 -116311397 - AluSg SINE Alu 0 306 1 1727 164 9 90 chr1 165882267 165882394 -116311270 - L1MB8 LINE L1 -563 5615 5479 3939 22 4 0 chr1 165882397 165882894 -116310770 - L1PA3 LINE L1 -1335 4811 4313 7676 26 0 0 chr1 165882894 165884249 -116309415 + L1PA3 LINE L1 4801 6152 -3 256 114 0 23 chr1 165884260 165884304 -116309360 - L1MB8 LINE L1 -703 5481 5439 * 3545 203 92 8 chr1 165884293 165885355 -116308309 - L1MEc LINE L1 -2834 3381 2231 716 219 7 0 chr1 165885358 165885495 -116308169 + MER58A DNA MER1_type 1 138 0 618 160 4 122 chr1 165885511 165885748 -116307916 - L1MEc LINE L1 -4125 2271 2063 21 0 0 0 chr1 165887123 165887144 -116306520 + AT_rich Low_complexity Low_complexity 1 21 0 4018 156 89 19 chr1 165887443 165888388 -116305276 + L1MB8 LINE L1 5174 6178 0 26 0 0 0 chr1 165889128 165889154 -116304510 + AT_rich Low_complexity Low_complexity 1 26 0 1969 148 10 3 chr1 165891174 165891477 -116302187 - AluJb SINE Alu -7 305 1 611 363 47 25 chr1 165891490 165891812 -116301852 + L2 LINE L2 2944 3272 0 1978 121 13 10 chr1 165892504 165892802 -116300862 + AluSx SINE Alu 1 299 -13 223 275 33 92 chr1 165892971 165893091 -116300573 + MIR SINE MIR 105 217 -45 235 179 0 0 chr1 165893229 165893268 -116300396 - L2 LINE L2 -10 3262 3224 650 318 127 34 chr1 165893371 165893758 -116299906 - L2 LINE L2 0 3313 2891 603 283 151 70 chr1 165893812 165894282 -116299382 - L2 LINE L2 -896 2418 1911 1292 208 36 0 chr1 165894301 165894551 -116299113 + MIR SINE MIR 1 259 -3 469 323 94 10 chr1 165894598 165894886 -116298778 - L2 LINE L2 -1452 1862 1551 917 127 33 0 chr1 165894891 165895041 -116298623 + L1M3f LINE L1 3 157 -5171 181 309 32 56 chr1 165895642 165895768 -116297896 - L2 LINE L2 -2418 896 774 373 143 0 29 chr1 165897043 165897106 -116296558 + AluS SINE Alu 222 284 -17 882 62 0 0 chr1 165897106 165897219 -116296445 + L1PA7 LINE L1 6040 6152 -2 34 0 0 0 chr1 165897225 165897259 -116296405 + AT_rich Low_complexity Low_complexity 1 34 0 819 164 0 15 chr1 165897716 165897850 -116295814 + FLAM_C SINE Alu 1 132 -1 28 0 0 0 chr1 165897850 165897878 -116295786 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr1 165897942 165897980 -116295684 + AT_rich Low_complexity Low_complexity 1 38 0 5187 160 31 9 chr1 165897983 165899689 -116293975 - L1MA7 LINE L1 -10 6281 4537 870 161 21 5 chr1 165899692 165899878 -116293786 + L1MA7 LINE L1 4344 4532 -1614 2397 93 0 3 chr1 165899921 165900222 -116293442 - AluSx SINE Alu -12 300 1 564 253 173 20 chr1 165900405 165900607 -116293057 + MIR SINE MIR 5 237 -25 458 282 51 8 chr1 165900687 165900804 -116292860 - L2 LINE L2 0 3272 3151 2425 80 0 0 chr1 165900966 165901268 -116292396 + AluY SINE Alu 1 302 -9 22 56 0 0 chr1 165901349 165901385 -116292279 + AT_rich Low_complexity Low_complexity 1 36 0 1894 107 73 0 chr1 165901553 165901814 -116291850 + AluSx SINE Alu 16 295 -17 26 0 0 0 chr1 165902169 165902195 -116291469 + AT_rich Low_complexity Low_complexity 1 26 0 342 258 31 0 chr1 165902550 165902647 -116291017 + L1ME LINE L1 49 148 -5922 238 341 0 24 chr1 165902776 165902902 -116290762 + L1ME LINE L1 328 450 -5620 867 271 61 62 chr1 165902906 165903734 -116289930 + L1MD1 LINE L1 123 950 -5132 2078 126 13 0 chr1 165903734 165904035 -116289629 + AluSx SINE Alu 1 305 -7 867 271 61 62 chr1 165904035 165904101 -116289563 + L1MD1 LINE L1 950 1015 -5067 1652 124 70 12 chr1 165904101 165904360 -116289304 + AluSx SINE Alu 25 298 -14 867 271 61 62 chr1 165904360 165904611 -116289053 + L1MD1 LINE L1 1015 1206 -4876 543 208 33 33 chr1 165904689 165904809 -116288855 + FLAM_A SINE Alu 1 120 -13 1654 197 58 19 chr1 165904821 165905310 -116288354 + L1MD1 LINE L1 4252 4720 -1456 2332 129 0 0 chr1 165905310 165905621 -116288043 + AluSx SINE Alu 1 311 -1 1654 197 58 19 chr1 165905621 165905783 -116287881 + L1MD1 LINE L1 4720 4874 -1302 2233 82 7 3 chr1 165905783 165906075 -116287589 + AluSx SINE Alu 2 294 -18 1654 197 58 19 chr1 165906075 165906263 -116287401 + L1MD1 LINE L1 4874 5053 -1123 2337 93 0 0 chr1 165906263 165906563 -116287101 + AluSg SINE Alu 1 300 -10 1654 197 58 19 chr1 165906563 165907424 -116286240 + L1MD1 LINE L1 5053 6176 0 2319 115 0 0 chr1 165909005 165909317 -116284347 - AluSx SINE Alu 0 312 1 428 241 204 0 chr1 165910006 165910143 -116283521 - MIR3 SINE MIR -2 206 42 1919 168 0 0 chr1 165910314 165910611 -116283053 + AluJb SINE Alu 1 297 -15 347 311 83 23 chr1 165910936 165911068 -116282596 - L2 LINE L2 0 3272 3133 236 229 156 0 chr1 165911319 165911391 -116282273 + MIR SINE MIR 100 186 -76 460 252 93 7 chr1 165911391 165911530 -116282134 + MIR SINE MIR 1 151 -111 22 0 0 0 chr1 165912558 165912580 -116281084 + AT_rich Low_complexity Low_complexity 1 22 0 859 258 96 4 chr1 165912649 165912878 -116280786 + MIR SINE MIR 5 254 -8 2138 83 4 4 chr1 165913372 165913649 -116280015 + AluSx SINE Alu 1 277 -35 471 35 0 0 chr1 165913650 165913707 -116279957 + (TC)n Simple_repeat Simple_repeat 2 58 0 252 0 0 0 chr1 165913706 165913734 -116279930 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1977 131 3 17 chr1 165914240 165914538 -116279126 - AluSx SINE Alu -18 294 1 2275 85 0 16 chr1 165914552 165914859 -116278805 - AluSc SINE Alu -7 302 1 2965 223 20 36 chr1 165914880 165915734 -116277930 - L1ME1 LINE L1 -5 6161 5322 2091 125 17 3 chr1 165915736 165916088 -116277576 - L1PA10 LINE L1 -2 6166 5810 2151 99 17 0 chr1 165916207 165916500 -116277164 - AluSq SINE Alu -14 299 2 2335 106 0 0 chr1 165916691 165916993 -116276671 + AluY SINE Alu 1 302 -9 2000 135 32 0 chr1 165918117 165918398 -116275266 + AluSx SINE Alu 1 290 -22 827 238 31 0 chr1 165918403 165918596 -116275068 - MER58A DNA MER1_type -25 199 1 1907 89 0 4 chr1 165919400 165919646 -116274018 + AluSg1 SINE Alu 50 294 -15 216 323 32 32 chr1 165919952 165920076 -116273588 + L2 LINE L2 2551 2674 -640 393 296 129 49 chr1 165920133 165920498 -116273166 + L2 LINE L2 2305 2698 -616 2435 100 3 0 chr1 165923338 165923648 -116270016 - AluY SINE Alu 0 311 1 2014 90 62 35 chr1 165924481 165924769 -116268895 - AluSx SINE Alu -15 297 2 859 153 90 0 chr1 165924932 165925109 -116268555 - L1MA8 LINE L1 -1 6290 6098 1240 143 0 0 chr1 165925113 165925288 -116268376 - AluSg/x SINE Alu -11 301 127 275 105 0 0 chr1 165925388 165925426 -116268238 - L1MA8 LINE L1 -310 5981 5944 1670 148 204 72 chr1 165925454 165925598 -116268066 + MLT1F1 LTR MaLR 2 126 -441 2036 123 32 3 chr1 165925598 165925883 -116267781 + AluSx SINE Alu 1 293 -19 1670 148 204 72 chr1 165925883 165926238 -116267426 + MLT1F1 LTR MaLR 126 567 0 251 314 14 12 chr1 165926238 165926339 -116267325 + MLT1F1-int LTR MaLR 1 102 -1269 673 266 102 16 chr1 165926440 165926696 -116266968 + MLT1F1-int LTR MaLR 324 601 -770 2166 114 10 0 chr1 165926813 165927111 -116266553 + AluSx SINE Alu 1 301 -11 1712 190 62 64 chr1 165927188 165927471 -116266193 - MLT1C LTR MaLR 0 467 184 2305 108 10 0 chr1 165927471 165927778 -116265886 - AluSx SINE Alu -2 310 1 1712 190 62 64 chr1 165927778 165927962 -116265702 - MLT1C LTR MaLR -283 184 1 583 305 58 102 chr1 165927973 165928685 -116264979 + MLT1F1-int LTR MaLR 692 1371 0 2491 195 103 19 chr1 165928685 165929208 -116264456 + MLT1F1 LTR MaLR 1 567 0 1975 259 132 34 chr1 165929692 165930781 -116262883 + L2 LINE L2 2007 3294 -19 995 191 98 10 chr1 165930798 165930992 -116262672 + AluJo SINE Alu 1 211 -101 2835 60 17 0 chr1 165931027 165931376 -116262288 + THE1A LTR MaLR 1 355 0 11825 95 9 1 chr1 165931376 165932943 -116260721 + THE1A-int LTR MaLR 1 1580 0 1103 89 7 7 chr1 165932955 165933101 -116260563 + THE1A LTR MaLR 210 355 0 1943 160 27 5 chr1 165933462 165933820 -116259844 + L1PA16 LINE L1 5803 6166 -2 243 90 23 0 chr1 165933827 165933871 -116259793 + L1PA16 LINE L1 6114 6157 -8 2145 115 0 3 chr1 165934058 165934381 -116259283 + AluSx SINE Alu 1 322 0 6993 66 12 23 chr1 165934526 165936082 -116257582 + SVA Other Other 5 1386 0 7471 61 17 19 chr1 165936641 165938394 -116255270 - SVA Other Other -589 1386 3 2191 111 7 0 chr1 165938697 165938985 -116254679 - AluSx SINE Alu -22 290 1 715 243 17 6 chr1 165939549 165939722 -116253942 + MIR SINE MIR 58 232 -30 205 322 23 23 chr1 165939786 165939873 -116253791 - L2 LINE L2 0 3272 3186 346 319 141 0 chr1 165939926 165940139 -116253525 + L1M4 LINE L1 3503 3745 -2401 978 201 53 5 chr1 165940191 165940380 -116253284 + AluJo SINE Alu 85 282 -30 322 297 36 20 chr1 165940450 165940667 -116252997 + L1M4 LINE L1 3832 4054 -2092 875 205 19 38 chr1 165940758 165940968 -116252696 + MER3 DNA MER1_type 1 206 -3 251 323 71 32 chr1 165941020 165941175 -116252489 + MIR SINE MIR 99 259 -3 * 331 274 113 8 chr1 165941165 165941289 -116252375 + L2 LINE L2 3174 3310 -3 206 290 174 7 chr1 165941362 165941459 -116252205 - L3 LINE CR1 -769 808 729 1875 189 55 18 chr1 165941459 165941841 -116251823 + MSTD LTR MaLR 1 396 0 206 290 174 7 chr1 165941841 165941898 -116251766 - L3 LINE CR1 -848 729 628 523 289 71 47 chr1 165942338 165942660 -116251004 - L1ME LINE L1 -418 5752 5423 3781 205 59 19 chr1 165942747 165943690 -116249974 - L1M4c LINE L1 -4639 2007 1027 182 146 0 55 chr1 165943692 165943714 -116249950 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 -29 618 219 23 16 chr1 165943714 165943842 -116249822 + FLAM_A SINE Alu 4 132 -1 182 146 0 55 chr1 165943842 165943874 -116249790 + (TAAAAA)n Simple_repeat Simple_repeat 24 53 0 983 220 38 45 chr1 165943900 165944164 -116249500 - L1M4c LINE L1 -5760 782 521 216 122 0 0 chr1 165944166 165944207 -116249457 + (T)n Simple_repeat Simple_repeat 1 41 0 745 304 39 11 chr1 165944305 165944565 -116249099 - L1M4c LINE L1 -6275 267 1 369 174 10 102 chr1 165944568 165944666 -116248998 - L1ME LINE L1 -724 5440 5352 2425 90 0 3 chr1 165944717 165945028 -116248636 - AluSx SINE Alu -2 310 1 269 274 9 28 chr1 165945201 165945307 -116248357 - L1ME LINE L1 -1763 4383 4280 1444 165 0 0 chr1 165945342 165945560 -116248104 + AluJo SINE Alu 1 218 -94 970 94 5 103 chr1 165945594 165945774 -116247890 - MER44D DNA MER2_type -1951 636 477 1442 188 41 34 chr1 165945774 165946066 -116247598 - AluJo SINE Alu -14 298 5 970 94 5 103 chr1 165946066 165946088 -116247576 - MER44D DNA MER2_type -2110 477 454 845 111 8 32 chr1 165946089 165946215 -116247449 + AluSq/x SINE Alu 3 125 -188 189 0 0 0 chr1 165946331 165946352 -116247312 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 401 121 0 17 chr1 165946358 165946416 -116247248 - MER44D DNA MER2_type -238 371 45 2189 116 3 0 chr1 165946491 165946792 -116246872 - AluSx SINE Alu -10 302 1 2233 93 14 3 chr1 165946885 165947175 -116246489 + AluSq SINE Alu 1 293 -20 23 33 0 0 chr1 165947547 165947577 -116246087 + AT_rich Low_complexity Low_complexity 1 30 0 601 228 114 0 chr1 165948029 165948222 -116245442 - MER114 LTR ERV -344 304 90 3186 148 30 13 chr1 165948234 165948829 -116244835 + L1MB7 LINE L1 5564 6168 -16 22 0 0 0 chr1 165948865 165948887 -116244777 + AT_rich Low_complexity Low_complexity 1 22 0 590 213 88 12 chr1 165948939 165949099 -116244565 - L1ME1 LINE L1 -104 6062 5891 22 0 0 0 chr1 165949327 165949349 -116244315 + AT_rich Low_complexity Low_complexity 1 22 0 1853 153 10 13 chr1 165949504 165949804 -116243860 - AluJb SINE Alu -13 299 1 1630 93 5 9 chr1 165949995 165950209 -116243455 - AluSg/x SINE Alu -16 294 82 22 0 0 0 chr1 165950507 165950529 -116243135 + AT_rich Low_complexity Low_complexity 1 22 0 1544 140 4 4 chr1 165950634 165950877 -116242787 + AluSx SINE Alu 58 300 -12 2502 72 0 0 chr1 165950970 165951274 -116242390 + AluY SINE Alu 1 304 -7 1118 203 19 31 chr1 165952172 165952433 -116241231 - MIR SINE MIR 0 262 5 2307 100 0 10 chr1 165952526 165952836 -116240828 - AluSq SINE Alu -6 307 1 679 179 43 0 chr1 165952972 165953089 -116240575 + FLAM_A SINE Alu 1 122 -11 2249 112 0 3 chr1 165953489 165953794 -116239870 - AluSx SINE Alu -8 304 1 292 119 0 0 chr1 165954412 165954454 -116239210 + L1MB4 LINE L1 6102 6143 -37 2246 65 0 7 chr1 165957251 165957527 -116236137 + AluY SINE Alu 38 311 0 2347 90 0 7 chr1 165957537 165957836 -116235828 + AluSx SINE Alu 1 297 -15 1911 121 64 0 chr1 165959781 165960107 -116233557 - AluSx SINE Alu 0 343 1 1051 153 56 5 chr1 165960406 165960496 -116233168 - Charlie5 DNA MER1_type 0 2624 2540 2164 111 24 3 chr1 165960496 165960794 -116232870 + AluSx SINE Alu 3 306 -6 1051 153 56 5 chr1 165960794 165960919 -116232745 - Charlie5 DNA MER1_type -84 2540 2398 586 168 226 0 chr1 165961051 165961206 -116232458 + MIR SINE MIR 2 191 -71 22 0 0 0 chr1 165961206 165961228 -116232436 + AT_rich Low_complexity Low_complexity 1 22 0 2325 88 0 26 chr1 165961228 165961536 -116232128 - AluSx SINE Alu -12 300 1 605 44 11 44 chr1 165961537 165961627 -116232037 - MER2 DNA MER2_type -164 181 95 1065 159 37 42 chr1 165961631 165961845 -116231819 - AluJb SINE Alu -14 298 86 564 206 0 0 chr1 165961845 165961942 -116231722 - MER2 DNA MER2_type -247 98 2 2240 123 0 3 chr1 165961954 165962256 -116231408 - AluSx SINE Alu -11 301 1 1993 158 3 3 chr1 165962276 165962587 -116231077 - AluJb SINE Alu 0 312 2 2146 108 7 3 chr1 165962725 165963011 -116230653 - AluSq SINE Alu -21 292 6 1226 187 23 105 chr1 165963089 165963296 -116230368 - AluYb8 SINE Alu -3 315 145 2363 91 3 10 chr1 165963296 165963605 -116230059 - AluSc SINE Alu -2 307 1 1226 187 23 105 chr1 165963605 165963740 -116229924 - AluYb8 SINE Alu -173 145 1 2309 117 0 0 chr1 165964007 165964306 -116229358 - AluSx SINE Alu -13 299 1 834 244 14 19 chr1 165964425 165964638 -116229026 + MIR SINE MIR 47 258 -4 2347 78 0 3 chr1 165964643 165964937 -116228727 - AluY SINE Alu -18 293 1 2069 116 3 32 chr1 165966507 165966818 -116226846 + AluJo SINE Alu 1 302 -10 1981 148 3 10 chr1 165966828 165967126 -116226538 + AluJo SINE Alu 1 296 -16 1975 171 0 3 chr1 165967499 165967803 -116225861 + AluJb SINE Alu 1 303 -9 1786 100 122 11 chr1 165967803 165968072 -116225592 + AluSx SINE Alu 1 300 -12 2346 99 0 6 chr1 165968219 165968531 -116225133 + AluSx SINE Alu 1 310 -2 1293 98 0 83 chr1 165968560 165968764 -116224900 + AluY SINE Alu 1 187 -124 2317 108 3 3 chr1 165968868 165969175 -116224489 - AluSq SINE Alu -6 307 1 305 140 0 18 chr1 165969269 165969326 -116224338 - L2 LINE L2 -1 3312 3257 787 288 92 55 chr1 165969529 165969618 -116224046 + MER20B DNA MER1_type 7 91 -692 2876 96 73 2 chr1 165969618 165970054 -116223610 + L1PA11 LINE L1 5708 6174 0 787 288 92 55 chr1 165970054 165970239 -116223425 + MER20B DNA MER1_type 91 300 -483 2052 125 0 14 chr1 165970239 165970551 -116223113 - AluJb SINE Alu 0 308 1 787 288 92 55 chr1 165970551 165970621 -116223043 + MER20B DNA MER1_type 300 366 -417 693 168 30 15 chr1 165970621 165970752 -116222912 + FLAM_C SINE Alu 1 133 0 256 250 202 24 chr1 165970772 165970896 -116222768 + MER20B DNA MER1_type 348 493 -290 213 88 0 0 chr1 165970964 165970975 -116222689 + (TA)n Simple_repeat Simple_repeat 1 11 -23 2014 100 22 48 chr1 165970975 165971286 -116222378 + AluSx SINE Alu 1 303 -9 213 88 0 0 chr1 165971286 165971308 -116222356 + (TA)n Simple_repeat Simple_repeat 10 34 0 368 248 76 9 chr1 165971319 165971424 -116222240 + MER20B DNA MER1_type 669 780 -3 2186 117 0 13 chr1 165971750 165972057 -116221607 + AluSx SINE Alu 1 303 -9 340 125 0 0 chr1 165972253 165972301 -116221363 - Alu SINE Alu -254 48 1 478 293 38 8 chr1 165972403 165972536 -116221128 - L2 LINE L2 0 3272 3136 416 263 0 0 chr1 165972829 165972924 -116220740 - MIR3 SINE MIR -3 205 111 26 0 0 0 chr1 165973815 165973841 -116219823 + AT_rich Low_complexity Low_complexity 1 26 0 747 259 110 4 chr1 165974008 165974244 -116219420 - MIR SINE MIR 0 262 2 1846 198 43 56 chr1 165974487 165974952 -116218712 + LTR40c LTR ERVL 7 465 0 493 310 55 17 chr1 165975097 165975435 -116218229 - L2 LINE L2 -197 3075 2724 2031 115 3 48 chr1 165975623 165975935 -116217729 - AluJb SINE Alu -14 298 1 236 214 95 36 chr1 165975989 165976073 -116217591 - LTR16B LTR ERVL -4 460 372 843 182 0 83 chr1 165976111 165976239 -116217425 - MER20B DNA MER1_type -43 176 68 1706 159 60 0 chr1 165976239 165976522 -116217142 + AluJb SINE Alu 1 300 -12 843 182 0 83 chr1 165976522 165976585 -116217079 - MER20B DNA MER1_type -151 68 1 1639 78 5 9 chr1 165976623 165976840 -116216824 + AluSq SINE Alu 81 296 -17 2025 80 26 70 chr1 165978315 165978627 -116215037 - AluSq SINE Alu -15 298 1 21 36 0 0 chr1 165978762 165978790 -116214874 + AT_rich Low_complexity Low_complexity 1 28 0 215 59 0 29 chr1 165978967 165979001 -116214663 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1254 165 21 5 chr1 165979037 165979231 -116214433 - AluJo SINE Alu -31 281 85 1774 166 0 17 chr1 165979375 165979670 -116213994 - AluJb SINE Alu -18 294 5 3143 191 19 38 chr1 165979996 165980339 -116213325 + L1P LINE L1 3161 3509 -2637 1747 179 3 10 chr1 165980339 165980646 -116213018 + AluJb SINE Alu 1 305 -7 3143 191 19 38 chr1 165980646 165980928 -116212736 + L1P LINE L1 3509 3772 -2374 1990 152 3 0 chr1 165980928 165981230 -116212434 + AluSx SINE Alu 1 303 -9 3143 191 19 38 chr1 165981230 165981350 -116212314 + L1P LINE L1 3772 3893 -2253 1023 211 14 14 chr1 165981354 165981572 -116212092 + AluJo SINE Alu 1 218 -94 2271 97 7 0 chr1 165981629 165981919 -116211745 + AluSc SINE Alu 1 292 -17 854 90 97 0 chr1 165981922 165982066 -116211598 + L1MA8 LINE L1 6099 6256 -35 256 120 80 80 chr1 165982169 165982244 -116211420 + L1MA8 LINE L1 6201 6275 -16 2120 127 0 10 chr1 165982782 165983089 -116210575 - AluJb SINE Alu -8 304 1 1830 126 51 7 chr1 165983366 165983660 -116210004 + AluSx SINE Alu 1 307 -5 878 114 8 0 chr1 165984086 165984209 -116209455 - FLAM_C SINE Alu -19 124 1 213 285 0 32 chr1 165985162 165985285 -116208379 + (CCG)n Simple_repeat Simple_repeat 2 120 0 532 224 208 46 chr1 165986273 165986419 -116207245 - L1ME4a LINE L1 -72 6049 5928 2287 89 0 13 chr1 165986419 165986722 -116206942 - AluSg SINE Alu -6 304 6 532 224 208 46 chr1 165986722 165987012 -116206652 - L1ME4a LINE L1 -193 5928 5542 333 235 189 26 chr1 165988403 165988556 -116205108 - L2 LINE L2 -18 3295 3118 1823 135 0 39 chr1 165988686 165988794 -116204870 + AluSx SINE Alu 36 147 -165 2527 70 0 0 chr1 165988794 165989096 -116204568 + AluY SINE Alu 1 302 -9 1823 135 0 39 chr1 165989096 165989268 -116204396 + AluSx SINE Alu 147 305 -7 410 306 139 14 chr1 165989292 165989508 -116204156 - L2 LINE L2 -211 3061 2819 371 145 16 0 chr1 165989513 165989575 -116204089 + 5S rRNA rRNA 37 99 -22 318 341 128 12 chr1 165989580 165989744 -116203920 - L2 LINE L2 -501 2813 2631 530 315 163 58 chr1 165990475 165991094 -116202570 + L2 LINE L2 2265 2948 -366 287 308 22 0 chr1 165991288 165991379 -116202285 - L2 LINE L2 -528 2786 2694 813 313 126 54 chr1 165991670 165991883 -116201781 - L2 LINE L2 -660 2654 2458 2178 121 3 0 chr1 165991883 165992180 -116201484 + AluSx SINE Alu 1 298 -14 813 313 126 54 chr1 165992180 165992192 -116201472 - L2 LINE L2 -856 2458 2448 1896 146 17 0 chr1 165992192 165992479 -116201185 + AluJb SINE Alu 6 297 -15 813 313 126 54 chr1 165992479 165992602 -116201062 - L2 LINE L2 -866 2448 2335 2308 91 14 0 chr1 165992602 165992898 -116200766 + AluSx SINE Alu 1 300 -12 813 313 126 54 chr1 165992898 165993126 -116200538 - L2 LINE L2 -979 2335 2125 1882 149 20 7 chr1 165993126 165993421 -116200243 + AluJo SINE Alu 1 299 -13 813 313 126 54 chr1 165993421 165994108 -116199556 - L2 LINE L2 -1189 2125 1278 2143 111 13 7 chr1 165994108 165994406 -116199258 + AluSq SINE Alu 1 300 -13 813 313 126 54 chr1 165994406 165994519 -116199145 - L2 LINE L2 -2036 1278 1175 1993 127 24 21 chr1 165995322 165995654 -116198010 - Tigger3(Golem) DNA MER2_type -1 3028 2696 1359 194 47 0 chr1 165996279 165996532 -116197132 + AluJo SINE Alu 36 300 -12 23 0 0 0 chr1 165996654 165996677 -116196987 + AT_rich Low_complexity Low_complexity 1 23 0 2246 101 3 19 chr1 165997618 165997934 -116195730 + AluSx SINE Alu 1 311 -1 2267 101 0 0 chr1 165998208 165998494 -116195170 + AluSx SINE Alu 2 287 -25 202 135 27 0 chr1 165998533 165998570 -116195094 + L2 LINE L2 3224 3261 -11 1599 179 7 24 chr1 165998679 165998970 -116194694 + AluJb SINE Alu 18 303 -9 2274 113 0 0 chr1 165999476 165999769 -116193895 + AluSx SINE Alu 1 293 -19 759 165 0 8 chr1 166000517 166000638 -116193026 - FLAM_A SINE Alu -17 125 6 2068 224 31 8 chr1 166000731 166001214 -116192450 - L1M4 LINE L1 -1687 4459 3966 238 269 167 0 chr1 166001329 166001407 -116192257 + L2 LINE L2 3163 3253 -19 1176 167 12 61 chr1 166001989 166002004 -116191660 - AluJo SINE Alu -4 308 294 538 14 28 0 chr1 166002004 166002075 -116191589 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 1176 167 12 61 chr1 166002075 166002304 -116191360 - AluJo SINE Alu -18 294 76 215 260 0 0 chr1 166002471 166002521 -116191143 + MIR SINE MIR 200 249 -13 274 312 184 9 chr1 166002786 166002895 -116190769 - L2 LINE L2 -18 3254 3127 4375 142 91 15 chr1 166002975 166003897 -116189767 + L1MA4 LINE L1 5171 6161 -139 1540 146 58 8 chr1 166003899 166004160 -116189504 + AluSx SINE Alu 22 295 -17 803 162 26 26 chr1 166004162 166004316 -116189348 + AluSg/x SINE Alu 136 289 -21 228 232 168 32 chr1 166004317 166004442 -116189222 - L2 LINE L2 -619 2695 2554 262 254 55 27 chr1 166006274 166006384 -116187280 + MIR SINE MIR 93 205 -57 209 204 23 0 chr1 166009549 166009593 -116184071 + MIR SINE MIR 107 151 -111 225 0 0 0 chr1 166009754 166009779 -116183885 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2130 65 38 4 chr1 166009793 166010056 -116183608 - AluY SINE Alu -39 272 1 791 190 68 153 chr1 166010056 166010344 -116183320 - LTR16B LTR ERVL -199 265 1 2241 115 0 0 chr1 166010441 166010736 -116182928 - AluSx SINE Alu -16 296 2 310 98 0 0 chr1 166010907 166010948 -116182716 + MER4A LTR ERV1 554 594 -70 30 0 0 0 chr1 166010948 166010978 -116182686 + AT_rich Low_complexity Low_complexity 1 30 0 361 246 231 0 chr1 166011414 166011544 -116182120 - MIR3 SINE MIR -6 202 43 2378 95 3 0 chr1 166012006 166012301 -116181363 - AluSx SINE Alu -16 296 1 1721 185 3 14 chr1 166012308 166012605 -116181059 - AluJo SINE Alu -18 294 1 2130 187 73 17 chr1 166012981 166013166 -116180498 + MLT1D LTR MaLR 3 176 -329 1705 164 3 30 chr1 166013166 166013465 -116180199 + AluJo SINE Alu 5 295 -17 2130 187 73 17 chr1 166013465 166013755 -116179909 + MLT1D LTR MaLR 176 505 0 353 235 224 17 chr1 166014179 166014358 -116179306 - MIR SINE MIR -27 235 20 278 224 0 35 chr1 166014414 166014472 -116179192 + L2 LINE L2 3151 3206 -66 289 205 0 64 chr1 166014500 166014578 -116179086 - MIR SINE MIR -130 132 60 267 31 0 0 chr1 166014711 166014743 -116178921 + (CATA)n Simple_repeat Simple_repeat 2 33 0 241 241 35 0 chr1 166015556 166015614 -116178050 + L2 LINE L2 3230 3289 -24 253 261 31 0 chr1 166015850 166015915 -116177749 - MIR SINE MIR -131 131 65 242 253 13 0 chr1 166017149 166017228 -116176436 + (CGG)n Simple_repeat Simple_repeat 3 82 0 442 242 17 58 chr1 166017716 166017836 -116175828 - MIR3 SINE MIR -40 168 54 266 320 153 35 chr1 166017840 166018068 -116175596 - MIR SINE MIR -7 255 1 216 135 0 0 chr1 166018273 166018310 -116175354 + (CA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr1 166022023 166022046 -116171618 + (G)n Simple_repeat Simple_repeat 1 23 0 461 242 105 52 chr1 166023106 166023335 -116170329 - MIR SINE MIR -13 249 18 369 140 0 0 chr1 166024919 166024976 -116168688 - L2 LINE L2 0 3313 3257 204 330 35 35 chr1 166025011 166025126 -116168538 - L3 LINE CR1 -69 1508 1394 2546 83 0 0 chr1 166025219 166025532 -116168132 + AluSp SINE Alu 1 313 0 1947 150 3 16 chr1 166025583 166025889 -116167775 + AluJb SINE Alu 1 302 -10 2307 97 13 10 chr1 166025891 166026200 -116167464 + AluSp SINE Alu 1 310 -3 633 302 71 20 chr1 166026220 166026566 -116167098 - L1ME LINE L1 -345 5776 5370 1774 159 17 7 chr1 166026566 166026856 -116166808 - AluSx SINE Alu -17 295 3 633 302 71 20 chr1 166026856 166026955 -116166709 - L1ME LINE L1 -751 5370 5277 584 271 0 0 chr1 166026988 166027117 -116166547 + L2 LINE L2 2106 2234 -1080 * 697 160 0 96 chr1 166027095 166027251 -116166413 + L2 LINE L2 3168 3308 -5 369 272 59 0 chr1 166027264 166027382 -116166282 - MIR SINE MIR -63 145 34 284 190 35 0 chr1 166027409 166027467 -116166197 - L3 LINE CR1 -185 1392 1333 2397 93 0 3 chr1 166027954 166028254 -116165410 - AluSg SINE Alu -11 299 1 815 247 0 0 chr1 166028481 166028651 -116165013 - FRAM SINE Alu -11 165 1 2318 78 3 0 chr1 166028660 166028944 -116164720 - AluSc SINE Alu -23 286 2 21 57 0 0 chr1 166029761 166029796 -116163868 + AT_rich Low_complexity Low_complexity 1 35 0 7021 99 22 22 chr1 166029852 166030821 -116162843 - LTR5 LTR ERVK 0 969 1 2226 104 0 10 chr1 166030875 166031172 -116162492 + AluSg SINE Alu 1 294 -16 372 332 181 30 chr1 166031244 166031503 -116162161 + L2 LINE L2 2128 2347 -967 2379 80 0 0 chr1 166031503 166031816 -116161848 - AluSq SINE Alu 0 313 1 372 332 181 30 chr1 166031816 166031904 -116161760 + L2 LINE L2 2347 2420 -894 2206 120 0 0 chr1 166031904 166032195 -116161469 - AluSq SINE Alu -22 291 1 372 332 181 30 chr1 166032195 166032375 -116161289 + L2 LINE L2 2420 2737 -577 1767 185 3 10 chr1 166032418 166032720 -116160944 - AluJo SINE Alu -12 300 1 396 316 70 32 chr1 166033074 166033232 -116160432 - L2 LINE L2 0 3313 3150 1330 174 13 13 chr1 166033242 166033466 -116160198 + AluJb SINE Alu 83 306 -6 191 284 48 101 chr1 166033486 166033574 -116160090 - L2 LINE L2 -229 3084 2993 2319 92 10 10 chr1 166033574 166033879 -116159785 + AluSg SINE Alu 1 305 -5 191 284 48 101 chr1 166033879 166033935 -116159729 - L2 LINE L2 -320 2993 2952 2028 123 7 0 chr1 166033935 166034228 -116159436 + AluSx SINE Alu 2 296 -16 191 284 48 101 chr1 166034228 166034290 -116159374 - L2 LINE L2 -361 2952 2888 230 213 330 11 chr1 166034402 166034496 -116159168 + FLAM_A SINE Alu 1 124 -9 1906 83 0 143 chr1 166034505 166034854 -116158810 + AluSx SINE Alu 1 299 -13 1276 95 0 6 chr1 166034974 166035142 -116158522 - AluSg/x SINE Alu -13 299 133 521 90 0 0 chr1 166035142 166035209 -116158455 - AluSp/q SINE Alu -91 222 156 22 0 0 0 chr1 166035215 166035237 -116158427 + AT_rich Low_complexity Low_complexity 1 22 0 1267 175 18 5 chr1 166037611 166037828 -116155836 - AluJo SINE Alu -9 303 84 2345 75 7 26 chr1 166040003 166040311 -116153353 + AluY SINE Alu 1 302 -9 25 0 0 0 chr1 166040593 166040618 -116153046 + AT_rich Low_complexity Low_complexity 1 25 0 302 268 0 14 chr1 166040819 166040890 -116152774 - MIR SINE MIR -85 123 54 2003 139 0 0 chr1 166041090 166041364 -116152300 - AluSx SINE Alu -33 279 6 200 301 133 31 chr1 166041969 166042165 -116151499 + L2 LINE L2 3021 3236 -77 4937 28 3 0 chr1 166042417 166042985 -116150679 - L1PA3 LINE L1 -2 6153 5584 1719 76 31 0 chr1 166043051 166043274 -116150390 + AluSc SINE Alu 1 230 -79 2213 122 20 0 chr1 166045856 166046159 -116147505 - AluSx SINE Alu -3 309 1 350 255 170 9 chr1 166046777 166046883 -116146781 - L2 LINE L2 0 3313 3191 2363 122 16 5 chr1 166046989 166047289 -116146375 - L1MA9 LINE L1 -65 6247 5941 2279 96 24 0 chr1 166047289 166047580 -116146084 - AluSx SINE Alu -14 298 1 2363 122 16 5 chr1 166047580 166047663 -116146001 - L1MA9 LINE L1 -371 5941 5860 2262 117 3 0 chr1 166049532 166049831 -116143833 + AluSx SINE Alu 1 300 -12 612 139 168 0 chr1 166049854 166049955 -116143709 + AluJb SINE Alu 1 118 -194 411 99 88 0 chr1 166050667 166050954 -116142710 + (TA)n Simple_repeat Simple_repeat 1 312 0 415 175 0 14 chr1 166050958 166051072 -116142592 - AluJ/FRAM SINE Alu -14 298 132 1877 172 10 0 chr1 166051072 166051362 -116142302 - AluJb SINE Alu -19 293 1 2598 42 7 3 chr1 166052313 166052623 -116141041 + AluY SINE Alu 1 311 0 1854 162 0 41 chr1 166054089 166054404 -116139260 + AluSx SINE Alu 1 302 -10 1977 145 0 23 chr1 166054434 166054737 -116138927 + AluJo SINE Alu 1 296 -16 2510 65 0 0 chr1 166054739 166055033 -116138631 + AluY SINE Alu 1 294 -17 311 211 11 0 chr1 166055211 166055306 -116138358 + (TA)n Simple_repeat Simple_repeat 1 96 0 187 296 0 91 chr1 166055343 166055431 -116138233 + L2 LINE L2 3227 3306 -7 1448 173 4 24 chr1 166055680 166055929 -116137735 + AluJo SINE Alu 39 282 -30 2117 100 12 47 chr1 166056329 166056611 -116137053 + AluSp SINE Alu 1 272 -41 228 67 0 0 chr1 166056611 166056641 -116137023 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2117 100 12 47 chr1 166056641 166056677 -116136987 + AluSp SINE Alu 272 308 -5 546 16 0 0 chr1 166057249 166057312 -116136352 + (TG)n Simple_repeat Simple_repeat 2 64 0 2342 95 20 3 chr1 166059828 166060133 -116133531 + AluSq SINE Alu 1 310 -3 600 275 198 0 chr1 166060363 166060570 -116133094 + MIR SINE MIR 1 248 -14 2206 108 3 7 chr1 166060580 166060877 -116132787 + AluSq SINE Alu 1 296 -17 740 217 94 38 chr1 166061573 166061723 -116131941 + MIR SINE MIR 27 195 -67 2467 57 0 0 chr1 166061723 166062047 -116131617 + AluY SINE Alu 1 324 0 740 217 94 38 chr1 166062047 166062107 -116131557 + MIR SINE MIR 195 250 -12 209 267 0 0 chr1 166062887 166062932 -116130732 + GA-rich Low_complexity Low_complexity 1 45 0 668 276 122 5 chr1 166065163 166065377 -116128287 + MIR SINE MIR 23 261 -1 283 286 0 0 chr1 166065533 166065603 -116128061 + L2 LINE L2 3244 3313 0 311 318 185 63 chr1 166065940 166065981 -116127683 - L2 LINE L2 0 3272 3237 2462 81 3 0 chr1 166065981 166066279 -116127385 + AluY SINE Alu 1 299 -12 311 318 185 63 chr1 166066279 166066523 -116127141 - L2 LINE L2 -35 3237 2952 292 303 37 18 chr1 166069370 166069479 -116124185 + MIR3 SINE MIR 14 124 -84 316 273 207 30 chr1 166069492 166069690 -116123974 + MIR SINE MIR 4 236 -26 2394 104 3 0 chr1 166069875 166070182 -116123482 - AluSx SINE Alu -4 308 1 266 206 29 0 chr1 166070669 166070737 -116122927 + L1MC4 LINE L1 6636 6705 -1337 821 160 0 0 chr1 166070740 166070865 -116122799 - FLAM_C SINE Alu -18 125 1 1162 78 0 0 chr1 166070913 166071066 -116122598 - L1PA5 LINE L1 -1 6153 6001 1847 158 3 10 chr1 166071420 166071717 -116121947 + AluJb SINE Alu 3 297 -15 3942 73 4 128 chr1 166071856 166072552 -116121112 - LTR66 LTR ERVL 0 610 1 1594 161 11 15 chr1 166072640 166072900 -116120764 + AluJb SINE Alu 37 295 -17 2045 131 29 13 chr1 166072903 166073209 -116120455 + AluSx SINE Alu 1 311 -1 225 298 11 32 chr1 166073236 166073330 -116120334 - L2 LINE L2 -458 2856 2765 23 0 0 0 chr1 166073500 166073523 -116120141 + GC_rich Low_complexity Low_complexity 1 23 0 1541 165 7 42 chr1 166073607 166073916 -116119748 + AluJo SINE Alu 9 306 -6 847 153 0 0 chr1 166074540 166074664 -116119000 + FLAM_C SINE Alu 2 125 -18 2129 123 3 3 chr1 166075051 166075343 -116118321 + AluSc SINE Alu 1 292 -17 336 238 0 50 chr1 166075541 166075621 -116118043 + L2 LINE L2 3224 3299 -14 949 163 71 5 chr1 166075685 166075881 -116117783 + MER6B DNA MER2_type 2 210 0 14201 39 14 0 chr1 166075891 166078407 -116115257 - L1PA5 LINE L1 -1 6153 3647 425 0 0 0 chr1 166078407 166078453 -116115211 + L1PA5 LINE L1 3625 3670 -2476 254 295 60 0 chr1 166081359 166081449 -116112215 + MIR SINE MIR 53 141 -67 476 275 111 37 chr1 166081596 166081785 -116111879 - MIR SINE MIR -24 238 36 1316 211 32 80 chr1 166083700 166084191 -116109473 + MLT2B3 LTR ERVL 1 540 -14 2083 136 0 3 chr1 166085071 166085366 -116108298 + AluSx SINE Alu 1 294 -18 282 287 294 35 chr1 166085677 166085792 -116107872 - L3 LINE CR1 -154 1423 1339 2175 87 31 3 chr1 166085792 166086078 -116107586 + AluSc SINE Alu 3 296 -13 282 287 294 35 chr1 166086078 166086244 -116107420 - L3 LINE CR1 -238 1339 1069 362 307 80 0 chr1 166086254 166086391 -116107273 - MIR SINE MIR -17 245 98 181 292 42 0 chr1 166086402 166086450 -116107214 - L3 LINE CR1 -505 1072 1023 261 322 173 18 chr1 166086527 166086856 -116106808 - L3 LINE CR1 -668 909 530 281 319 29 22 chr1 166086940 166087082 -116106582 + MIR SINE MIR 28 168 -59 279 0 0 0 chr1 166087247 166087278 -116106386 + (A)n Simple_repeat Simple_repeat 1 31 0 573 227 74 102 chr1 166089821 166090037 -116103627 - MER63A DNA MER1_type 0 210 1 2410 60 0 20 chr1 166090625 166090927 -116102737 - AluY SINE Alu -15 296 1 1889 149 14 0 chr1 166091231 166091349 -116102315 + AluJb SINE Alu 5 120 -192 369 0 0 0 chr1 166091349 166091390 -116102274 + (CA)n Simple_repeat Simple_repeat 2 42 0 1889 149 14 0 chr1 166091390 166091547 -116102117 + AluJb SINE Alu 120 284 -28 1543 215 53 30 chr1 166092000 166092433 -116101231 + LTR47B LTR ERVL 1 443 0 1006 124 41 30 chr1 166092934 166093103 -116100561 - Tigger7 DNA MER2_type -1 2586 2416 * 2125 161 70 62 chr1 166093101 166093183 -116100481 - Tigger7 DNA MER2_type -2025 462 382 2155 120 0 7 chr1 166093183 166093484 -116100180 - AluSx SINE Alu -13 299 1 2125 161 70 62 chr1 166093484 166093545 -116100119 - Tigger7 DNA MER2_type -2105 382 323 2617 53 0 0 chr1 166093545 166093845 -116099819 - AluY SINE Alu -11 300 1 2357 108 39 29 chr1 166093855 166094270 -116099394 - L1MA4A LINE L1 -5 6298 5880 2125 161 70 62 chr1 166094270 166094568 -116099096 - Tigger7 DNA MER2_type -2172 315 5 317 192 41 14 chr1 166095299 166095372 -116098292 + L2 LINE L2 3239 3313 0 286 351 69 33 chr1 166096377 166096574 -116097090 + MIR SINE MIR 1 210 -52 2423 78 0 19 chr1 166096574 166096883 -116096781 + AluY SINE Alu 1 303 -8 286 351 69 33 chr1 166096883 166096930 -116096734 + MIR SINE MIR 210 254 -8 187 279 12 47 chr1 166097517 166097603 -116096061 + L2 LINE L2 2222 2304 -1010 195 266 75 21 chr1 166097899 166097993 -116095671 - L2 LINE L2 -207 3065 2967 2121 122 0 0 chr1 166098017 166098303 -116095361 + AluSg SINE Alu 4 289 -21 1639 171 23 0 chr1 166098449 166098713 -116094951 - AluJo SINE Alu -42 270 1 967 158 6 13 chr1 166101004 166101162 -116092502 + AluSg/x SINE Alu 141 297 -13 2200 120 13 3 chr1 166101764 166102073 -116091591 + AluSx SINE Alu 1 312 0 1784 109 98 18 chr1 166102088 166102363 -116091301 + AluSc SINE Alu 1 297 -12 358 207 58 11 chr1 166102683 166102770 -116090894 + MER5B DNA MER1_type 4 94 -84 2414 50 7 20 chr1 166102823 166103121 -116090543 + AluY SINE Alu 2 295 -16 2516 81 0 0 chr1 166103953 166104260 -116089404 + AluSc SINE Alu 2 308 -1 1897 119 3 25 chr1 166104468 166104753 -116088911 + AluSx SINE Alu 2 280 -32 352 118 29 0 chr1 166104753 166104821 -116088843 + GA-rich Low_complexity Low_complexity 1 70 0 254 341 169 11 chr1 166104823 166105090 -116088574 - L2 LINE L2 -397 2917 2609 1471 162 122 43 chr1 166105687 166106039 -116087625 + MLT1B LTR MaLR 1 380 -10 2014 118 4 0 chr1 166106380 166106651 -116087013 + AluSx SINE Alu 1 272 -40 204 185 31 15 chr1 166106657 166106722 -116086942 + GA-rich Low_complexity Low_complexity 4 69 0 1965 96 10 80 chr1 166106941 166107254 -116086410 - AluSg SINE Alu -19 291 1 262 295 70 16 chr1 166107597 166107726 -116085938 - Charlie8 DNA MER1_type -2226 191 56 23 0 0 0 chr1 166107841 166107864 -116085800 + AT_rich Low_complexity Low_complexity 1 23 0 2088 120 0 32 chr1 166107983 166108292 -116085372 + AluSx SINE Alu 1 299 -13 2273 105 7 10 chr1 166108292 166108597 -116085067 + AluSq SINE Alu 1 304 -9 1142 122 6 0 chr1 166108600 166108756 -116084908 + AluSg/x SINE Alu 129 285 -27 2326 101 0 0 chr1 166110258 166110554 -116083110 + AluSx SINE Alu 1 296 -16 180 147 0 0 chr1 166111034 166111068 -116082596 + L2 LINE L2 2922 2955 -358 22 0 0 0 chr1 166111909 166111931 -116081733 + AT_rich Low_complexity Low_complexity 1 22 0 2479 72 0 0 chr1 166111947 166112240 -116081424 + AluY SINE Alu 1 293 -18 187 309 221 22 chr1 166112719 166112900 -116080764 - MIR SINE MIR -11 251 35 2174 113 0 26 chr1 166113162 166113464 -116080200 - AluSq SINE Alu -19 294 1 262 239 220 0 chr1 166113820 166113929 -116079735 - MIR SINE MIR -21 241 109 312 255 10 20 chr1 166114321 166114423 -116079241 - L2 LINE L2 -38 3275 3175 2250 125 0 0 chr1 166114431 166114726 -116078938 - AluSx SINE Alu -17 295 1 181 304 58 0 chr1 166114791 166114860 -116078804 - L2 LINE L2 -252 3061 2989 251 330 11 0 chr1 166114893 166114987 -116078677 - MIR3 SINE MIR -25 183 89 1851 155 0 10 chr1 166115092 166115383 -116078281 - AluJb SINE Alu -18 294 7 188 182 0 73 chr1 166115981 166116036 -116077628 + MER5B DNA MER1_type 2 52 -126 1729 166 18 0 chr1 166117931 166118214 -116075450 + AluJb SINE Alu 25 312 0 209 283 0 66 chr1 166118217 166118323 -116075341 + MIR SINE MIR 42 140 -68 2058 96 0 15 chr1 166118360 166118653 -116075011 - AluSx SINE Alu 0 306 18 513 167 46 9 chr1 166118654 166118762 -116074902 - L1ME3A LINE L1 -266 5904 5793 386 231 63 8 chr1 166118830 166118956 -116074708 + L1ME3A LINE L1 6025 6157 -5 2283 115 0 0 chr1 166119168 166119464 -116074200 + AluJb SINE Alu 1 296 -16 4935 148 35 26 chr1 166119464 166120354 -116073310 - L1MB3 LINE L1 -4 6179 5282 231 330 76 17 chr1 166120378 166120496 -116073168 - MIR3 SINE MIR -81 127 3 2340 92 3 0 chr1 166121422 166121715 -116071949 + AluSx SINE Alu 1 294 -18 2016 117 7 55 chr1 166121724 166122032 -116071632 + AluSx SINE Alu 2 294 -18 2365 81 0 26 chr1 166122156 166122464 -116071200 + AluSq SINE Alu 2 301 -12 344 154 15 15 chr1 166122763 166122828 -116070836 - AluSp SINE Alu -116 187 123 2371 101 0 13 chr1 166123546 166123862 -116069802 + AluSx SINE Alu 1 312 0 357 277 56 84 chr1 166124392 166124605 -116069059 + L3 LINE CR1 1080 1286 -291 2290 106 3 6 chr1 166124619 166124931 -116068733 + AluSx SINE Alu 1 311 -1 714 264 87 0 chr1 166124952 166125160 -116068504 - MIR SINE MIR -1 261 36 228 269 60 52 chr1 166125224 166125358 -116068306 + L3 LINE CR1 1335 1469 -108 593 196 6 71 chr1 166125396 166125564 -116068100 + MER5A DNA MER1_type 33 189 0 2333 90 7 7 chr1 166126814 166127124 -116066540 - AluY SINE Alu -1 310 1 1766 152 0 49 chr1 166127567 166127708 -116065956 + AluJo SINE Alu 1 147 -165 2033 129 7 0 chr1 166127708 166128037 -116065627 + AluSx SINE Alu 3 333 0 1766 152 0 49 chr1 166128037 166128222 -116065442 + AluJo SINE Alu 147 312 0 1672 200 129 14 chr1 166129311 166129736 -116063928 + Charlie4a DNA MER1_type 14 487 -21 259 194 309 43 chr1 166130083 166130222 -116063442 - MIR SINE MIR -54 208 33 231 305 69 52 chr1 166131339 166131513 -116062151 + MIR SINE MIR 47 223 -39 712 211 123 18 chr1 166131544 166131771 -116061893 - MIR SINE MIR 0 262 12 304 239 15 108 chr1 166131886 166131931 -116061733 - MIR SINE MIR -143 119 71 2635 48 0 10 chr1 166131931 166132242 -116061422 - AluY SINE Alu -2 309 2 304 239 15 108 chr1 166132242 166132326 -116061338 - MIR SINE MIR -191 71 2 433 273 94 84 chr1 166132850 166132953 -116060711 - L1MC/D LINE L1 -1869 4277 4177 2068 102 25 0 chr1 166132953 166133227 -116060437 - AluSq SINE Alu -32 281 1 433 273 94 84 chr1 166133227 166134110 -116059554 - L1MC/D LINE L1 -1969 4177 3752 1709 160 42 0 chr1 166134123 166134411 -116059253 - AluJo SINE Alu -10 302 3 527 260 64 112 chr1 166134425 166134487 -116059177 + L1MC/D LINE L1 3729 3792 -2354 2145 79 0 85 chr1 166134487 166134803 -116058861 + AluSg SINE Alu 1 289 -21 527 260 64 112 chr1 166134803 166135427 -116058237 + L1MC/D LINE L1 3792 4361 -1785 5171 72 6 0 chr1 166135427 166136090 -116057574 + L1PA6 LINE L1 5485 6151 -3 527 260 64 112 chr1 166136090 166136340 -116057324 + L1MC/D LINE L1 4361 4621 -1525 253 325 50 8 chr1 166136529 166136730 -116056934 - L1ME LINE L1 -188 5933 5723 709 254 132 44 chr1 166136774 166137381 -116056283 + L1MC/D LINE L1 4997 5658 -743 1890 73 8 12 chr1 166137849 166138095 -116055569 - AluSx SINE Alu -10 302 58 315 277 89 0 chr1 166138329 166138441 -116055223 + MIR SINE MIR 90 211 -51 565 270 42 11 chr1 166138765 166138954 -116054710 - L2 LINE L2 -2172 1142 948 187 376 103 18 chr1 166139221 166139386 -116054278 + L2 LINE L2 2992 3170 -102 1813 163 14 3 chr1 166139387 166139675 -116053989 + AluJo SINE Alu 1 291 -21 321 264 107 25 chr1 166139850 166139971 -116053693 - MIR3 SINE MIR -45 163 33 194 296 15 111 chr1 166140640 166140735 -116052929 - MIR SINE MIR -67 141 61 2302 122 3 0 chr1 166140735 166141047 -116052617 + AluSp SINE Alu 1 313 0 194 296 15 111 chr1 166141047 166141086 -116052578 - MIR SINE MIR -147 61 20 1274 266 165 35 chr1 166141489 166141747 -116051917 + HAL1 LINE L1 1532 1755 -752 704 133 70 31 chr1 166141747 166141875 -116051789 + FLAM_C SINE Alu 1 133 0 1274 266 165 35 chr1 166141875 166142447 -116051217 + HAL1 LINE L1 1755 2470 -37 2083 127 0 19 chr1 166142470 166142786 -116050878 - AluSx SINE Alu -2 310 1 356 291 101 38 chr1 166142958 166143356 -116050308 + L2 LINE L2 1942 2364 -950 228 303 45 0 chr1 166143564 166143653 -116050011 + L2 LINE L2 3157 3249 -23 251 250 171 11 chr1 166143889 166143977 -116049687 - L2 LINE L2 -1 3271 3170 2360 99 0 0 chr1 166144179 166144483 -116049181 + AluSx SINE Alu 9 312 0 278 200 123 0 chr1 166144494 166144559 -116049105 - MIR SINE MIR -12 250 178 2051 146 3 0 chr1 166144652 166144961 -116048703 + AluJb SINE Alu 3 312 0 228 245 204 20 chr1 166146114 166146212 -116047452 + L2 LINE L2 3189 3304 -9 1768 148 52 7 chr1 166146327 166146618 -116047046 + AluJb SINE Alu 1 304 -8 28 29 0 0 chr1 166146993 166147028 -116046636 + AT_rich Low_complexity Low_complexity 1 35 0 333 262 9 95 chr1 166148822 166148925 -116044739 + MIR SINE MIR 1 79 -183 2520 77 0 0 chr1 166148925 166149222 -116044442 - AluSx SINE Alu -13 299 3 333 262 9 95 chr1 166149222 166149328 -116044336 + MIR SINE MIR 79 192 -70 1946 153 14 0 chr1 166150194 166150482 -116043182 - AluSx SINE Alu -20 292 1 2152 116 3 0 chr1 166151174 166151466 -116042198 + AluSx SINE Alu 3 295 -17 203 179 0 0 chr1 166152024 166152063 -116041601 + (TA)n Simple_repeat Simple_repeat 1 39 0 748 115 18 0 chr1 166152230 166152343 -116041321 + AluSq/x SINE Alu 2 116 -197 1843 190 123 17 chr1 166152426 166152841 -116040823 + MLT2B1 LTR ERVL 1 459 -61 2039 133 0 3 chr1 166152842 166153162 -116040502 + AluSx SINE Alu 1 319 0 1684 133 4 0 chr1 166154538 166154772 -116038892 + AluJb SINE Alu 33 267 -45 2140 104 48 0 chr1 166154990 166155279 -116038385 - AluSq SINE Alu -10 303 1 189 94 0 0 chr1 166155671 166155703 -116037961 + (TC)n Simple_repeat Simple_repeat 2 33 0 1955 151 13 7 chr1 166155995 166156299 -116037365 - AluJo SINE Alu -6 306 1 2125 113 27 0 chr1 166156302 166156594 -116037070 - AluSp SINE Alu -11 302 3 2217 100 40 7 chr1 166156596 166156896 -116036768 - AluSx SINE Alu -2 310 1 21 0 0 0 chr1 166157014 166157035 -116036629 + AT_rich Low_complexity Low_complexity 1 21 0 2375 87 3 0 chr1 166157040 166157338 -116036326 - AluSp SINE Alu -14 299 1 2299 103 3 0 chr1 166157338 166157630 -116036034 - AluSq SINE Alu -20 293 1 2159 124 3 3 chr1 166157760 166158059 -116035605 + AluSx SINE Alu 3 301 -11 2199 99 16 16 chr1 166158129 166158433 -116035231 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr1 166158686 166158715 -116034949 + AT_rich Low_complexity Low_complexity 1 29 0 1584 169 61 14 chr1 166158819 166159115 -116034549 - AluJo SINE Alu 0 312 3 702 186 90 21 chr1 166159236 166159381 -116034283 - FRAM SINE Alu -11 155 1 1905 157 7 0 chr1 166159936 166160222 -116033442 + AluJo SINE Alu 1 288 -24 1191 167 10 0 chr1 166160042 166160234 -116033430 + AluJb SINE Alu 107 300 -12 689 304 224 27 chr1 166160361 166160738 -116032926 + L2 LINE L2 2137 2438 -875 2429 105 0 0 chr1 166160738 166161044 -116032620 - AluSx SINE Alu -6 306 1 689 304 224 27 chr1 166161044 166161382 -116032282 + L2 LINE L2 2438 2991 -322 564 86 0 0 chr1 166161400 166161481 -116032183 - Alu SINE Alu 0 310 230 5177 81 4 21 chr1 166161531 166161638 -116032026 - LTR12 LTR ERV1 0 688 581 2506 80 0 0 chr1 166161638 166161940 -116031724 + AluY SINE Alu 1 302 -9 5177 81 4 21 chr1 166161940 166162532 -116031132 - LTR12 LTR ERV1 -107 581 1 310 300 58 0 chr1 166163169 166163289 -116030375 + L1MC5 LINE L1 7765 7891 -70 1247 92 46 46 chr1 166163294 166163331 -116030333 - L1MB2 LINE L1 -9 6162 6126 1493 167 156 0 chr1 166163331 166163588 -116030076 - AluJb SINE Alu -5 297 1 1247 92 46 46 chr1 166163588 166163768 -116029896 - L1MB2 LINE L1 -44 6127 5945 3232 128 0 4 chr1 166163791 166164284 -116029380 + LOR1a LTR ERV1 7 497 0 5938 185 28 40 chr1 166164285 166165969 -116027695 - L1MB2 LINE L1 -239 5932 4228 2412 91 0 0 chr1 166165969 166166267 -116027397 - AluSc SINE Alu -11 298 1 5938 185 28 40 chr1 166166267 166166531 -116027133 - L1MB2 LINE L1 -1943 4228 4017 1482 186 53 4 chr1 166166531 166166795 -116026869 - AluJo SINE Alu -35 277 1 5938 185 28 40 chr1 166166795 166166954 -116026710 - L1MB2 LINE L1 -2154 4017 3858 222 273 172 20 chr1 166167140 166167239 -116026425 - MIR SINE MIR -25 237 124 717 270 104 26 chr1 166167265 166167762 -116025902 + MLT1H LTR MaLR 17 555 0 2207 89 0 41 chr1 166167789 166168103 -116025561 + AluY SINE Alu 1 301 -10 1598 107 27 5 chr1 166168189 166168413 -116025251 + AluSx SINE Alu 1 229 -83 186 43 0 0 chr1 166168437 166168460 -116025204 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2138 135 0 13 chr1 166168685 166168989 -116024675 - AluJb SINE Alu -12 300 1 2118 130 7 0 chr1 166170289 166170589 -116023075 - AluSx SINE Alu -10 302 1 180 188 125 0 chr1 166171045 166171093 -116022571 - L2 LINE L2 0 3272 3219 334 176 0 18 chr1 166171321 166171394 -116022270 + L1MA9 LINE L1 6195 6272 -27 270 0 0 0 chr1 166171400 166171430 -116022234 + (CA)n Simple_repeat Simple_repeat 1 30 0 201 256 0 0 chr1 166171452 166171491 -116022173 + MIR SINE MIR 73 111 -97 230 250 0 18 chr1 166172676 166172732 -116020932 - MIR SINE MIR -56 152 98 33 0 0 0 chr1 166172774 166172807 -116020857 + AT_rich Low_complexity Low_complexity 1 33 0 2257 104 0 0 chr1 166172964 166173278 -116020386 + AluSx SINE Alu 3 316 0 1549 181 140 0 chr1 166173384 166173699 -116019965 + MSTB LTR MaLR 1 359 -67 1191 121 6 0 chr1 166173699 166173865 -116019799 - AluSg/x SINE Alu -9 301 135 417 45 91 15 chr1 166173867 166173933 -116019731 + MSTB1 LTR MaLR 362 432 0 3077 102 47 24 chr1 166174456 166174947 -116018717 - L1MA4A LINE L1 -5 6298 5797 230 247 27 0 chr1 166175598 166175671 -116017993 + (CTGGGG)n Simple_repeat Simple_repeat 2 76 0 2612 69 0 0 chr1 166178404 166178710 -116014954 + AluSq SINE Alu 3 308 -5 2065 139 19 10 chr1 166179193 166179502 -116014162 + AluJb SINE Alu 1 312 0 2639 59 0 0 chr1 166179533 166179840 -116013824 + AluY SINE Alu 1 307 -4 198 308 0 0 chr1 166179981 166180033 -116013631 - L2 LINE L2 -10 3303 3252 296 259 24 12 chr1 166180044 166180129 -116013535 - MIR SINE MIR -124 138 53 381 265 86 53 chr1 166180423 166180478 -116013186 + MIR SINE MIR 2 54 -179 2179 103 7 4 chr1 166180478 166180783 -116012881 - AluSq SINE Alu 0 306 1 381 265 86 53 chr1 166180783 166180940 -116012724 + MIR SINE MIR 54 206 -27 479 294 59 7 chr1 166181251 166181404 -116012260 - MIR SINE MIR -56 206 46 198 120 80 60 chr1 166183867 166183917 -116009747 - MIR SINE MIR -8 254 204 2252 107 3 0 chr1 166184162 166184460 -116009204 + AluY SINE Alu 1 299 -12 201 175 0 0 chr1 166185230 166185270 -116008394 + CT-rich Low_complexity Low_complexity 2 41 0 201 39 0 0 chr1 166185623 166185649 -116008015 + (TG)n Simple_repeat Simple_repeat 2 27 0 2214 77 0 11 chr1 166185867 166186140 -116007524 + AluY SINE Alu 22 291 -20 2456 83 3 0 chr1 166186249 166186549 -116007115 + AluSp SINE Alu 1 301 -12 365 272 25 68 chr1 166187133 166187295 -116006369 + L2 LINE L2 3158 3312 -1 2500 78 3 0 chr1 166190231 166190577 -116003087 + AluSx SINE Alu 1 347 0 1117 114 7 0 chr1 166190802 166190951 -116002713 + AluSg/x SINE Alu 126 275 -35 510 199 97 68 chr1 166191179 166191304 -116002360 + MIR SINE MIR 82 215 -47 2510 62 0 7 chr1 166191304 166191608 -116002056 + AluY SINE Alu 1 302 -9 510 199 97 68 chr1 166191608 166191658 -116002006 + MIR SINE MIR 215 262 0 438 287 110 7 chr1 166191794 166191930 -116001734 + MIR SINE MIR 17 166 -96 1697 161 35 7 chr1 166191930 166192215 -116001449 + AluJo SINE Alu 1 293 -19 2167 100 11 0 chr1 166192217 166192532 -116001132 + AluSx SINE Alu 1 318 0 22 0 0 0 chr1 166192572 166192594 -116001070 + AT_rich Low_complexity Low_complexity 1 22 0 277 352 88 22 chr1 166194031 166194213 -115999451 - MIR SINE MIR 0 262 69 1206 116 0 0 chr1 166195047 166195202 -115998462 - AluSg/x SINE Alu -20 290 136 3569 138 37 17 chr1 166195228 166195501 -115998163 - L1MC1 LINE L1 0 6333 6067 1876 162 3 10 chr1 166195501 166195825 -115997839 - AluJo SINE Alu 0 312 1 3569 138 37 17 chr1 166195825 166196152 -115997512 - L1MC1 LINE L1 -266 6067 5721 2188 118 7 7 chr1 166196153 166196458 -115997206 - AluSx SINE Alu -7 305 1 1847 150 36 0 chr1 166196556 166196836 -115996828 - AluSx SINE Alu -22 290 1 328 252 146 0 chr1 166198416 166198519 -115995145 - L2 LINE L2 0 3313 3196 2201 121 0 0 chr1 166198644 166198933 -115994731 - AluSx SINE Alu -23 289 1 2352 95 3 3 chr1 166198944 166199249 -115994415 - AluSc SINE Alu -4 305 1 2150 96 7 7 chr1 166199329 166199639 -115994025 - AluSx SINE Alu 0 310 1 2322 19 59 4 chr1 166200337 166200607 -115993057 - AluY SINE Alu -26 285 1 596 130 23 130 chr1 166200611 166200658 -115993006 - L1MA10 LINE L1 -9 6325 6279 407 292 36 12 chr1 166200658 166200826 -115992838 - L1ME1 LINE L1 -30 6136 5965 217 248 352 19 chr1 166201211 166201316 -115992348 + L2 LINE L2 3129 3268 -4 2235 76 7 33 chr1 166201392 166201695 -115991969 + AluSg SINE Alu 1 295 -15 22 35 0 0 chr1 166202292 166202321 -115991343 + GC_rich Low_complexity Low_complexity 1 29 0 242 302 6 53 chr1 166203289 166203458 -115990206 + G-rich Low_complexity Low_complexity 2 162 0 208 224 0 97 chr1 166205768 166205902 -115987762 + CT-rich Low_complexity Low_complexity 4 124 0 321 130 111 0 chr1 166206460 166206514 -115987150 + L2 LINE L2 3213 3272 0 2346 108 0 7 chr1 166206604 166206910 -115986754 - AluSx SINE Alu -8 304 1 314 345 35 28 chr1 166207902 166208044 -115985620 - L3 LINE CR1 -2 1575 1433 240 372 25 0 chr1 166208630 166208751 -115984913 + L2 LINE L2 2522 2645 -669 2194 97 0 10 chr1 166209116 166209416 -115984248 + AluSg SINE Alu 1 297 -13 23 0 0 0 chr1 166209560 166209583 -115984081 + AT_rich Low_complexity Low_complexity 1 23 0 1702 156 17 13 chr1 166209622 166209923 -115983741 - AluJb SINE Alu -10 302 1 4895 155 20 108 chr1 166209950 166210069 -115983595 - L1MC3 LINE L1 -2 7783 7655 2466 39 10 13 chr1 166210069 166210381 -115983283 + AluSq SINE Alu 1 311 -2 2188 66 16 10 chr1 166210382 166210685 -115982979 + AluSp SINE Alu 2 306 -7 4895 155 20 108 chr1 166210685 166211162 -115982502 - L1MC3 LINE L1 -130 7655 7138 2476 68 0 0 chr1 166211162 166211469 -115982195 + AluSg SINE Alu 1 307 -3 4895 155 20 108 chr1 166211469 166211584 -115982080 - L1MC3 LINE L1 -647 7138 7014 2325 65 7 0 chr1 166211584 166211876 -115981788 + AluSp SINE Alu 7 300 -13 4895 155 20 108 chr1 166211876 166212163 -115981501 - L1MC3 LINE L1 -771 7014 6906 1330 172 48 54 chr1 166212163 166212477 -115981187 - AluJb SINE Alu 0 312 1 4895 155 20 108 chr1 166212477 166212699 -115980965 - L1MC3 LINE L1 -879 6906 6666 2027 141 0 0 chr1 166212908 166213207 -115980457 + AluJb SINE Alu 1 299 -13 409 221 12 23 chr1 166213241 166213327 -115980337 + L3 LINE CR1 1491 1575 -2 1407 147 107 26 chr1 166213358 166213630 -115980034 + AluJb SINE Alu 8 301 -11 245 282 0 39 chr1 166213684 166213762 -115979902 + L2 LINE L2 3194 3268 -4 809 173 64 0 chr1 166213849 166214005 -115979659 + FRAM SINE Alu 1 166 -10 881 117 0 44 chr1 166215178 166215315 -115978349 - FLAM_C SINE Alu -1 132 2 1870 131 0 43 chr1 166215472 166215777 -115977887 + AluSx SINE Alu 1 292 -20 1984 116 7 7 chr1 166215777 166216069 -115977595 + AluSg SINE Alu 1 292 -18 2354 80 0 3 chr1 166216114 166216414 -115977250 + AluSc SINE Alu 1 299 -10 300 210 0 0 chr1 166217496 166217577 -115976087 + GA-rich Low_complexity Low_complexity 3 83 0 1405 166 23 46 chr1 166219470 166219772 -115973892 + AluJo SINE Alu 4 298 -14 2146 93 4 0 chr1 166220514 166220818 -115972846 - AluSg SINE Alu 0 306 2 605 187 8 45 chr1 166220972 166221106 -115972558 + FLAM_C SINE Alu 3 131 -2 396 290 14 22 chr1 166221398 166221536 -115972128 + MIR3 SINE MIR 54 190 -18 573 262 93 40 chr1 166223546 166223794 -115969870 - MER102a DNA MER1_type -9 321 61 207 0 0 0 chr1 166223806 166223829 -115969835 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2011 121 7 0 chr1 166223833 166224122 -115969542 - AluSp SINE Alu -22 291 1 1709 113 128 4 chr1 166225157 166225423 -115968241 + AluSc SINE Alu 1 299 0 1762 146 23 23 chr1 166226161 166226469 -115967195 + AluSx SINE Alu 5 312 0 914 243 59 14 chr1 166226535 166226757 -115966907 - MIR SINE MIR -30 232 1 2272 83 3 10 chr1 166226778 166227092 -115966572 - AluSx SINE Alu 0 312 1 876 188 12 0 chr1 166227439 166227604 -115966060 + FAM SINE Alu 1 40 -9 1976 108 11 4 chr1 166227807 166228106 -115965558 - AluSx SINE Alu 0 301 1 2073 88 7 0 chr1 166228632 166228915 -115964749 + AluSp SINE Alu 25 309 -4 412 124 178 62 chr1 166228916 166228945 -115964719 - MER3 DNA MER1_type -14 148 124 1877 138 7 3 chr1 166228945 166229241 -115964423 + AluJb SINE Alu 1 297 -15 1741 146 0 18 chr1 166229249 166229530 -115964134 + AluJb SINE Alu 32 307 -5 412 124 178 62 chr1 166229530 166229620 -115964044 - MER3 DNA MER1_type -44 118 5 1068 108 13 0 chr1 166229687 166229844 -115963820 - AluSg/x SINE Alu -17 293 135 752 195 40 7 chr1 166230317 166230466 -115963198 - FRAM SINE Alu 0 176 23 1960 128 0 0 chr1 166230642 166230955 -115962709 + AluSx SINE Alu 2 314 0 1216 183 33 70 chr1 166231253 166231405 -115962259 + AluJo SINE Alu 1 138 -174 222 91 0 0 chr1 166231405 166231438 -115962226 + (CA)n Simple_repeat Simple_repeat 2 34 0 1216 183 33 70 chr1 166231438 166231585 -115962079 + AluJo SINE Alu 138 289 -23 231 310 0 0 chr1 166236279 166236337 -115957327 + G-rich Low_complexity Low_complexity 3 60 0 2024 112 3 10 chr1 166237978 166238273 -115955391 - AluSx SINE Alu -19 293 1 1455 138 30 0 chr1 166238525 166238757 -115954907 - AluSx SINE Alu -53 259 21 1622 162 28 0 chr1 166239565 166239849 -115953815 - AluSx SINE Alu 0 312 21 822 144 0 50 chr1 166239953 166240092 -115953572 + AluJo/FLAM SINE Alu 2 133 -169 2483 57 0 0 chr1 166240095 166240394 -115953270 + AluY SINE Alu 1 299 -12 2583 23 0 7 chr1 166240537 166240839 -115952825 + AluY SINE Alu 1 300 -11 282 276 214 7 chr1 166240853 166240998 -115952666 - MIR SINE MIR -65 197 23 187 283 0 0 chr1 166241085 166241131 -115952533 - L3 LINE CR1 -3 1574 1529 241 258 16 0 chr1 166241156 166241218 -115952446 - MIR SINE MIR -153 109 47 286 172 69 17 chr1 166241249 166241307 -115952357 - FRAM SINE Alu -37 129 69 1440 191 32 7 chr1 166241329 166241612 -115952052 - AluJo SINE Alu -18 294 5 2097 96 31 0 chr1 166241814 166242107 -115951557 + AluSp SINE Alu 1 302 -11 1966 125 0 3 chr1 166242207 166242494 -115951170 - AluSx SINE Alu -26 286 1 967 161 270 9 chr1 166242501 166242731 -115950933 - AluYa5 SINE Alu -21 290 1 2049 114 7 0 chr1 166242798 166243087 -115950577 - AluSx SINE Alu -19 293 3 2031 137 3 0 chr1 166243231 166243537 -115950127 - AluSx SINE Alu -4 308 2 2256 94 0 0 chr1 166243554 166243852 -115949812 - AluSx SINE Alu -14 298 1 186 372 199 23 chr1 166243957 166244206 -115949458 + L2 LINE L2 2067 2271 -1043 2313 66 17 0 chr1 166244206 166244508 -115949156 - AluSp SINE Alu -6 307 1 1625 180 0 34 chr1 166244508 166244831 -115948833 - AluJo SINE Alu 0 312 1 186 372 199 23 chr1 166244831 166245021 -115948643 + L2 LINE L2 2270 2585 -729 26 0 0 0 chr1 166245033 166245059 -115948605 + GC_rich Low_complexity Low_complexity 1 26 0 729 237 6 0 chr1 166245281 166245437 -115948227 - L1ME LINE L1 -430 5740 5584 808 115 0 0 chr1 166246100 166246213 -115947451 + AluSq/x SINE Alu 1 113 -199 1839 92 0 0 chr1 166246213 166246453 -115947211 + AluSx SINE Alu 54 293 -19 588 155 144 0 chr1 166246477 166246574 -115947090 - FLAM_C SINE Alu -24 119 9 939 144 0 0 chr1 166247699 166247845 -115945819 + AluSg/x SINE Alu 159 304 -6 1703 129 25 88 chr1 166247872 166248189 -115945475 - AluJb SINE Alu -15 297 1 1341 128 0 5 chr1 166248408 166248612 -115945052 + AluJb SINE Alu 1 203 -109 216 0 0 0 chr1 166248623 166248647 -115945017 + (A)n Simple_repeat Simple_repeat 1 24 0 441 36 0 0 chr1 166248660 166248715 -115944949 + (CA)n Simple_repeat Simple_repeat 2 56 0 22 35 0 0 chr1 166249319 166249348 -115944316 + AT_rich Low_complexity Low_complexity 1 29 0 1343 159 59 7 chr1 166249384 166249654 -115944010 - AluJo SINE Alu -23 289 6 2264 82 3 0 chr1 166249664 166249958 -115943706 - AluSp SINE Alu -18 295 1 321 258 0 0 chr1 166250060 166250126 -115943538 - MIR SINE MIR -65 143 78 2302 99 0 0 chr1 166250189 166250492 -115943172 + AluSx SINE Alu 3 305 -7 34 24 0 0 chr1 166250527 166250568 -115943096 + AT_rich Low_complexity Low_complexity 1 41 0 1792 146 0 30 chr1 166250572 166250873 -115942791 - AluJb SINE Alu -20 292 1 1874 148 0 7 chr1 166250878 166251183 -115942481 - AluJo SINE Alu -9 303 1 1638 164 3 26 chr1 166251284 166251589 -115942075 + AluJo SINE Alu 2 299 -13 1756 147 7 27 chr1 166252065 166252365 -115941299 - AluSx SINE Alu -18 294 1 2098 108 3 10 chr1 166252378 166252683 -115940981 - AluSx SINE Alu -9 303 1 553 119 0 0 chr1 166252801 166252885 -115940779 - AluJ/FRAM SINE Alu 0 312 229 1685 127 8 8 chr1 166252885 166253145 -115940519 - AluSx SINE Alu -52 260 1 1744 163 0 14 chr1 166253154 166253448 -115940216 - AluJo SINE Alu -22 290 1 2204 110 7 0 chr1 166253492 166253800 -115939864 - AluSx SINE Alu 0 312 3 905 139 20 7 chr1 166253858 166254009 -115939655 + AluSc SINE Alu 118 270 -39 323 268 87 16 chr1 166254022 166254123 -115939541 - L1ME1 LINE L1 -143 6023 5910 1854 116 4 4 chr1 166254123 166254400 -115939264 + AluSx SINE Alu 36 312 0 323 268 87 16 chr1 166254400 166254425 -115939239 - L1ME1 LINE L1 -256 5910 5888 704 215 51 68 chr1 166254479 166254790 -115938874 - HAL1 LINE L1 -296 2211 1906 2455 195 29 114 chr1 166255171 166255336 -115938328 - L1ME1 LINE L1 -5 6161 5983 1371 139 0 160 chr1 166255336 166255680 -115937984 - AluSx SINE Alu -13 289 1 2455 195 29 114 chr1 166255680 166256379 -115937285 - L1ME1 LINE L1 -183 5983 5371 618 131 0 0 chr1 166256426 166256510 -115937154 + AluS SINE Alu 2 85 -228 1957 58 0 4 chr1 166256849 166257109 -115936555 + AluY SINE Alu 1 259 -52 2320 76 0 0 chr1 166257853 166258154 -115935510 - AluY SINE Alu -10 301 1 331 254 15 0 chr1 166258156 166258223 -115935441 + MER2 DNA MER2_type 273 340 -5 1685 113 16 68 chr1 166258565 166258876 -115934788 - AluSx SINE Alu -17 295 1 680 263 34 42 chr1 166258975 166259237 -115934427 + MIR SINE MIR 1 260 -2 22 0 0 0 chr1 166261681 166261703 -115931961 + GC_rich Low_complexity Low_complexity 1 22 0 691 42 10 10 chr1 166264787 166264883 -115928781 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 678 209 0 0 chr1 166264883 166264998 -115928666 - FLAM_C SINE Alu -27 116 2 725 134 27 0 chr1 166265052 166265164 -115928500 + FRAM SINE Alu 26 140 -36 296 120 80 0 chr1 166265316 166265366 -115928298 - MLT2A1 LTR ERVL 0 453 400 204 194 65 0 chr1 166265369 166265431 -115928233 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 238 132 0 0 chr1 166265433 166265471 -115928193 - L1MB5 LINE L1 -192 5982 5945 3172 84 0 5 chr1 166265506 166265911 -115927753 - MLT2A1 LTR ERVL -41 403 1 2126 222 85 55 chr1 166266113 166267028 -115926636 + L1MC5 LINE L1 6284 7224 -737 846 129 0 23 chr1 166267029 166267161 -115926503 + FLAM_C SINE Alu 1 129 -14 476 191 186 59 chr1 166267161 166267253 -115926411 + L1MC5 LINE L1 7216 7295 -666 288 0 0 0 chr1 166267253 166267285 -115926379 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 476 191 186 59 chr1 166267285 166267396 -115926268 + L1MC5 LINE L1 7295 7445 -516 1786 136 63 0 chr1 166267407 166267693 -115925971 - AluSx SINE Alu -8 304 1 225 0 0 0 chr1 166267703 166267742 -115925922 + (TG)n Simple_repeat Simple_repeat 1 64 0 225 0 0 0 chr1 166267742 166267767 -115925897 + (TG)n Simple_repeat Simple_repeat 2 26 0 361 346 13 7 chr1 166267826 166267979 -115925685 - LTR65 LTR ERV1 0 669 516 591 270 31 0 chr1 166268086 166268245 -115925419 - MER90 LTR ERV1 -205 370 207 264 259 37 37 chr1 166268310 166268418 -115925246 + HAL1 LINE L1 1562 1669 -838 1908 150 3 0 chr1 166268426 166268720 -115924944 - AluSx SINE Alu -17 295 1 917 132 21 48 chr1 166268720 166268909 -115924755 - L1MC/D LINE L1 -749 5493 5310 530 217 0 9 chr1 166268921 166269036 -115924628 - L1MC/D LINE L1 -1286 4860 4747 2158 94 13 7 chr1 166269037 166269459 -115924205 - AluSx SINE Alu 0 424 1 225 214 14 0 chr1 166269467 166269537 -115924127 - L1MC/D LINE L1 -1446 4700 4630 2471 31 0 0 chr1 166269537 166269828 -115923836 - AluY SINE Alu -20 291 1 1677 152 7 7 chr1 166269861 166270138 -115923526 + AluSx SINE Alu 9 285 -27 228 67 0 0 chr1 166270141 166270171 -115923493 + (TAA)n Simple_repeat Simple_repeat 2 31 0 887 135 0 0 chr1 166270229 166270355 -115923309 + SVA Other Other 307 432 -954 3738 147 80 65 chr1 166270395 166270486 -115923178 - L1MB5 LINE L1 -9 6165 6077 2309 89 0 6 chr1 166270486 166270800 -115922864 + AluSx SINE Alu 1 312 0 3738 147 80 65 chr1 166270800 166271013 -115922651 - L1MB5 LINE L1 -97 6077 5869 2206 86 0 26 chr1 166271013 166271315 -115922349 - AluSc SINE Alu -14 295 2 3738 147 80 65 chr1 166271315 166271809 -115921855 - L1MB5 LINE L1 -305 5869 5349 2110 100 21 0 chr1 166271809 166272098 -115921566 - AluSx SINE Alu -15 297 3 3738 147 80 65 chr1 166272098 166272168 -115921496 - L1MB5 LINE L1 -825 5349 5282 1028 191 116 85 chr1 166272169 166272450 -115921214 - L1MDa LINE L1 -4617 1923 1652 2284 151 45 12 chr1 166272450 166272868 -115920796 - MSTB1 LTR MaLR 0 432 1 1028 191 116 85 chr1 166272868 166273028 -115920636 - L1MDa LINE L1 -4888 1652 1499 2150 75 27 7 chr1 166273028 166273323 -115920341 - AluSc SINE Alu -8 301 1 1028 191 116 85 chr1 166273323 166273408 -115920256 - L1MDa LINE L1 -5041 1499 1418 1741 153 37 10 chr1 166273408 166273702 -115919962 - AluSx SINE Alu -10 302 1 1028 191 116 85 chr1 166273702 166273749 -115919915 - L1MDa LINE L1 -5122 1418 1283 2368 228 40 17 chr1 166273750 166274277 -115919387 - L1MDa LINE L1 -5974 566 28 873 199 11 0 chr1 166274338 166274514 -115919150 - AluSc SINE Alu -15 294 117 2254 101 3 0 chr1 166274569 166274876 -115918788 + AluSx SINE Alu 1 308 -4 1191 166 174 20 chr1 166275466 166275719 -115917945 + AluJo SINE Alu 1 292 -10 757 187 0 15 chr1 166276085 166276219 -115917445 - AluJb SINE Alu -179 133 2 1985 98 4 0 chr1 166276331 166276605 -115917059 - AluSq SINE Alu -38 275 1 1034 67 0 15 chr1 166276607 166276741 -115916923 - AluSq/x SINE Alu -181 132 1 2329 69 10 0 chr1 166276750 166277056 -115916608 - AluSq SINE Alu -2 311 3 1132 194 57 14 chr1 166277640 166277919 -115915745 - AluJb SINE Alu -15 297 7 634 0 0 0 chr1 166277961 166278033 -115915631 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2066 84 7 7 chr1 166278249 166278546 -115915118 - AluSq SINE Alu -16 297 1 1034 247 37 19 chr1 166278816 166279140 -115914524 - L1MC4a LINE L1 -1849 5959 5630 641 14 0 0 chr1 166279330 166279402 -115914262 + tRNA-Gly-GGA tRNA tRNA 1 72 -3 669 0 0 0 chr1 166280313 166280385 -115913279 + tRNA-His-CAC tRNA tRNA 1 72 -3 1281 134 65 65 chr1 166280530 166280653 -115913011 + AluJb SINE Alu 1 123 -179 2486 53 0 0 chr1 166280653 166280956 -115912708 - AluSg SINE Alu -7 303 1 1281 134 65 65 chr1 166280956 166281123 -115912541 + AluJb SINE Alu 122 291 -11 674 0 0 0 chr1 166281671 166281745 -115911919 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 1994 65 108 0 chr1 166281887 166282164 -115911500 + AluSp SINE Alu 1 307 -6 2392 65 0 3 chr1 166282840 166283149 -115910515 - AluSx SINE Alu -4 308 1 861 222 22 0 chr1 166283290 166283475 -115910189 + MER5A DNA MER1_type 1 189 0 259 309 22 51 chr1 166283507 166283685 -115909979 + L1M4 LINE L1 4510 4682 -1464 1501 195 3 7 chr1 166283689 166283987 -115909677 - AluJb SINE Alu -11 301 5 2242 76 7 0 chr1 166284028 166284331 -115909333 - AluY SINE Alu -5 306 2 1666 149 43 7 chr1 166284420 166284701 -115908963 - AluSg SINE Alu -19 291 1 24 32 0 0 chr1 166284701 166284732 -115908932 + AT_rich Low_complexity Low_complexity 1 31 0 2378 66 7 0 chr1 166284743 166285047 -115908617 + AluSp SINE Alu 1 306 -7 418 161 49 12 chr1 166285057 166285138 -115908526 + MLT1A2 LTR MaLR 71 154 -395 238 200 33 0 chr1 166285157 166285217 -115908447 + MLT1G LTR MaLR 517 578 -12 293 281 8 58 chr1 166285363 166285484 -115908180 + HAL1 LINE L1 1400 1514 -993 393 225 36 45 chr1 166285484 166285595 -115908069 - MER90 LTR ERV1 0 614 505 287 289 10 10 chr1 166285590 166285687 -115907977 - MER90 LTR ERV1 -228 386 290 * 1093 124 34 0 chr1 166285687 166285864 -115907800 + AluSg/x SINE Alu 122 304 -6 2318 80 3 0 chr1 166285867 166286168 -115907496 + AluSg SINE Alu 1 302 -8 804 210 105 25 chr1 166286170 166286408 -115907256 - MER90 LTR ERV1 -318 257 1 2360 82 0 0 chr1 166286430 166286733 -115906931 + AluSg SINE Alu 1 303 -7 623 107 0 0 chr1 166286761 166286845 -115906819 + AluSx SINE Alu 2 85 -228 1602 252 9 48 chr1 166286845 166287306 -115906358 - LTR2 LTR ERV1 0 449 7 1640 82 0 22 chr1 166287307 166287538 -115906126 + AluSx SINE Alu 77 302 -8 1269 235 47 67 chr1 166287538 166287900 -115905764 + HAL1 LINE L1 1542 1891 -616 2237 96 3 3 chr1 166287900 166288213 -115905451 - AluSq SINE Alu 0 313 1 1269 235 47 67 chr1 166288213 166288403 -115905261 + HAL1 LINE L1 1891 2083 -424 815 219 44 0 chr1 166288403 166288563 -115905101 + MLT1A2 LTR MaLR 208 374 0 439 186 0 0 chr1 166288678 166288748 -115904916 - MER31A LTR ERV1 -63 422 353 379 342 13 40 chr1 166289359 166289487 -115904177 + L1MC4a LINE L1 5538 5668 -2140 2235 75 3 0 chr1 166289487 166289782 -115903882 + AluY SINE Alu 15 310 -1 379 342 13 40 chr1 166289782 166289954 -115903710 + L1MC4a LINE L1 5668 5830 -1978 262 272 76 109 chr1 166289990 166290058 -115903606 - MIR SINE MIR -1 261 192 4214 93 18 7 chr1 166290058 166290661 -115903003 + MER4B LTR ERV1 1 610 0 262 272 76 109 chr1 166290661 166290692 -115902972 - MIR SINE MIR -70 192 162 1980 130 7 0 chr1 166290692 166291000 -115902664 - AluSx SINE Alu 0 312 3 262 272 76 109 chr1 166291000 166291083 -115902581 - MIR SINE MIR -100 162 84 524 92 0 26 chr1 166291444 166291520 -115902144 - tRNA-Asn-AAC tRNA tRNA -3 74 1 249 289 62 0 chr1 166291982 166292079 -115901585 + L2 LINE L2 3211 3313 0 666 197 149 90 chr1 166292344 166292734 -115900930 + ERVL-F LTR ERVL 5310 5722 -42 236 200 17 0 chr1 166292736 166292796 -115900868 + GA-rich Low_complexity Low_complexity 2 62 0 402 303 171 11 chr1 166292829 166293004 -115900660 + MLT2F LTR ERVL 1 203 -460 469 116 12 70 chr1 166293249 166293335 -115900329 + MER30 DNA MER1_type 1 81 -149 1250 100 3 153 chr1 166293396 166293516 -115900148 + AluSx SINE Alu 1 51 -261 2247 81 0 26 chr1 166293516 166293826 -115899838 - AluSg SINE Alu -8 302 1 1250 100 3 153 chr1 166293826 166294005 -115899659 + AluSx SINE Alu 51 255 -57 240 272 32 88 chr1 166294086 166294211 -115899453 - AluSq/x SINE Alu -181 122 5 1276 92 0 0 chr1 166294329 166294493 -115899171 - U1 snRNA snRNA -1 164 1 250 293 52 26 chr1 166294890 166295006 -115898658 - Charlie4 DNA MER1_type -4 1957 1839 2334 54 6 13 chr1 166295275 166295588 -115898076 - AluY SINE Alu 0 311 1 818 200 12 0 chr1 166295674 166295839 -115897825 - AluJb SINE Alu -6 306 140 287 227 13 13 chr1 166295857 166295932 -115897732 + MER4B-int LTR ERV1 5766 5840 -918 2877 196 29 35 chr1 166295967 166296586 -115897078 - L1P LINE L1 -5521 625 11 497 132 13 0 chr1 166296603 166296679 -115896985 - AluJb SINE Alu -179 133 57 2068 164 44 3 chr1 166296680 166297046 -115896618 + LOR1b LTR ERV1 79 459 -2 497 125 0 0 chr1 166297839 166297911 -115895753 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 220 271 0 29 chr1 166298822 166298892 -115894772 + GA-rich Low_complexity Low_complexity 2 69 0 267 256 218 0 chr1 166300132 166300343 -115893321 + HAL1 LINE L1 2105 2361 -146 289 359 63 11 chr1 166300635 166300922 -115892742 + L1ME LINE L1 5490 5791 -330 322 219 143 25 chr1 166301005 166301124 -115892540 - MIR SINE MIR -26 236 104 211 202 0 56 chr1 166302052 166302141 -115891523 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 * 219 206 15 15 chr1 166302089 166302157 -115891507 + (TA)n Simple_repeat Simple_repeat 1 68 0 2253 66 0 30 chr1 166302169 166302470 -115891194 - AluY SINE Alu -19 292 1 1188 214 11 4 chr1 166302629 166302904 -115890760 + AluJo SINE Alu 27 303 -9 1057 256 111 39 chr1 166302980 166303394 -115890270 - L1 LINE L1 -1443 4703 4260 290 143 16 0 chr1 166303394 166303457 -115890207 + (TG)n Simple_repeat Simple_repeat 2 65 0 256 235 0 0 chr1 166303475 166303526 -115890138 - L1 LINE L1 -1901 4245 4195 269 276 118 20 chr1 166303533 166303787 -115889877 - HAL1 LINE L1 -861 1646 1368 374 261 169 30 chr1 166303787 166304283 -115889381 - L1MEc LINE L1 -4878 1235 785 1650 146 0 26 chr1 166304283 166304550 -115889114 - AluSq SINE Alu -4 309 50 374 261 169 30 chr1 166304550 166304588 -115889076 - L1MEc LINE L1 -5328 785 754 933 253 37 47 chr1 166304850 166305253 -115888411 + L1M4 LINE L1 4859 5257 -889 594 286 21 10 chr1 166305253 166305445 -115888219 + MLT2D LTR ERVL 1 194 -220 251 203 72 0 chr1 166305470 166305539 -115888125 + MLT2B3 LTR ERVL 417 490 -64 309 82 0 0 chr1 166306780 166306829 -115886835 + (CA)n Simple_repeat Simple_repeat 1 49 0 558 310 50 46 chr1 166307188 166307627 -115886037 + L1MC4 LINE L1 7189 7629 -413 238 347 11 34 chr1 166307638 166307814 -115885850 - L1MC4 LINE L1 -411 7631 7460 291 85 0 0 chr1 166308974 166309021 -115884643 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 245 175 38 12 chr1 166309427 166309507 -115884157 + CT-rich Low_complexity Low_complexity 2 83 0 230 143 20 0 chr1 166310579 166310628 -115883036 + GA-rich Low_complexity Low_complexity 1 50 0 270 106 0 0 chr1 166312122 166312169 -115881495 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 266 163 38 12 chr1 166312575 166312655 -115881009 + CT-rich Low_complexity Low_complexity 2 83 0 384 22 0 0 chr1 166313747 166313792 -115879872 + (CA)n Simple_repeat Simple_repeat 2 46 0 411 21 0 0 chr1 166314088 166314136 -115879528 + (CA)n Simple_repeat Simple_repeat 1 48 0 221 146 21 0 chr1 166315645 166315693 -115877971 + GA-rich Low_complexity Low_complexity 1 49 0 333 0 0 0 chr1 166317200 166317237 -115876427 + (CA)n Simple_repeat Simple_repeat 2 38 0 411 21 0 0 chr1 166317535 166317583 -115876081 + (CA)n Simple_repeat Simple_repeat 1 48 0 221 146 21 0 chr1 166319092 166319140 -115874524 + GA-rich Low_complexity Low_complexity 1 49 0 243 0 0 0 chr1 166320645 166320672 -115872992 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 266 163 38 12 chr1 166321078 166321158 -115872506 + CT-rich Low_complexity Low_complexity 2 83 0 438 20 0 0 chr1 166322250 166322301 -115871363 + (CA)n Simple_repeat Simple_repeat 2 52 0 221 146 21 0 chr1 166323810 166323858 -115869806 + GA-rich Low_complexity Low_complexity 1 49 0 297 0 0 0 chr1 166325363 166325396 -115868268 + (CAGAGA)n Simple_repeat Simple_repeat 4 36 0 266 163 38 12 chr1 166325802 166325882 -115867782 + CT-rich Low_complexity Low_complexity 2 83 0 474 18 0 0 chr1 166326974 166327029 -115866635 + (CA)n Simple_repeat Simple_repeat 2 56 0 221 146 21 0 chr1 166328538 166328586 -115865078 + GA-rich Low_complexity Low_complexity 1 49 0 221 146 21 0 chr1 166330078 166330126 -115863538 + GA-rich Low_complexity Low_complexity 1 49 0 243 0 0 0 chr1 166331631 166331658 -115862006 + (CAGAGA)n Simple_repeat Simple_repeat 4 30 0 266 163 38 12 chr1 166332064 166332144 -115861520 + CT-rich Low_complexity Low_complexity 2 83 0 15609 125 12 17 chr1 166334015 166334991 -115858673 + L1P LINE L1 875 1854 -4292 5518 41 9 0 chr1 166334991 166335645 -115858019 - L1PA4 LINE L1 -2 6153 5494 15609 125 12 17 chr1 166335645 166337032 -115856632 + L1P LINE L1 1854 3226 -2920 1632 165 0 0 chr1 166337750 166337992 -115855672 + AluSx SINE Alu 38 279 -33 401 242 0 0 chr1 166338950 166339045 -115854619 + L1MB5 LINE L1 6071 6165 -9 440 265 7 14 chr1 166339988 166340135 -115853529 - MIR SINE MIR -21 241 96 218 93 0 23 chr1 166340288 166340331 -115853333 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1925 128 0 0 chr1 166340333 166340606 -115853058 - AluSg SINE Alu -37 273 1 1956 138 6 6 chr1 166341688 166342000 -115851664 - AluSx SINE Alu 0 312 1 2472 67 0 32 chr1 166342010 166342326 -115851338 - AluY SINE Alu -5 306 1 1047 211 5 5 chr1 166342409 166342613 -115851051 - AluJb SINE Alu -108 204 1 347 200 42 42 chr1 166345247 166345342 -115848322 + L1MB5 LINE L1 6071 6165 -9 401 279 7 14 chr1 166346345 166346492 -115847172 - MIR SINE MIR -21 241 96 21 36 0 0 chr1 166346639 166346667 -115846997 + AT_rich Low_complexity Low_complexity 1 28 0 1705 172 10 0 chr1 166346669 166346965 -115846699 - AluSg SINE Alu -11 299 1 199 241 133 0 chr1 166351019 166351102 -115842562 - MER5A DNA MER1_type -77 112 19 289 253 44 0 chr1 166351139 166351228 -115842436 - MIR SINE MIR -67 141 47 2037 154 10 0 chr1 166351425 166351730 -115841934 - AluJo SINE Alu -4 308 1 21 0 0 0 chr1 166351739 166351760 -115841904 + AT_rich Low_complexity Low_complexity 1 21 0 252 257 119 9 chr1 166552376 166552485 -115641179 + REP3 LTR ERV 1 121 -441 750 252 61 33 chr1 166552496 166552783 -115640881 + L1ME2 LINE L1 5801 6093 -69 78 22 0 0 chr1 166552783 166552875 -115640789 + AT_rich Low_complexity Low_complexity 1 92 0 609 42 0 0 chr1 166553372 166553444 -115640220 - tRNA-Gln-CAG tRNA tRNA -3 72 1 809 158 0 20 chr1 166553633 166553785 -115639879 + AluY SINE Alu 150 298 -13 524 200 136 82 chr1 166553940 166554186 -115639478 - MLT1H LTR MaLR -249 300 1 2290 65 4 0 chr1 166554221 166554530 -115639134 - AluY SINE Alu 0 314 5 378 0 0 0 chr1 166554560 166554602 -115639062 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 905 164 48 14 chr1 166554632 166554888 -115638776 - MER4C-int LTR ERV1 -5761 837 505 1070 67 0 0 chr1 166554888 166555022 -115638642 - AluY SINE Alu 0 311 178 2724 99 75 35 chr1 166555022 166555478 -115638186 - MER4C-int LTR ERV1 -6124 474 1 350 91 0 18 chr1 166555480 166555535 -115638129 - MER4C LTR ERV1 0 465 412 569 209 167 65 chr1 166556413 166556628 -115637036 - MLT1E2 LTR MaLR -330 296 60 2021 201 35 31 chr1 166556628 166556669 -115636995 + L1M4 LINE L1 2297 2336 -3810 3346 145 0 4 chr1 166556669 166557166 -115636498 + LOR1a LTR ERV1 3 497 0 2021 201 35 31 chr1 166557166 166557607 -115636057 + L1M4 LINE L1 2336 2781 -3365 1638 189 58 7 chr1 166558320 166558435 -115635229 + AluJo SINE Alu 1 109 -203 249 98 0 0 chr1 166558435 166558476 -115635188 + (CA)n Simple_repeat Simple_repeat 2 42 0 1638 189 58 7 chr1 166558476 166558651 -115635013 + AluJo SINE Alu 109 306 -6 476 194 0 0 chr1 166558736 166558829 -115634835 - AluJ/FRAM SINE Alu -1 311 219 1936 106 20 0 chr1 166558843 166559097 -115634567 - AluY SINE Alu -52 259 1 852 174 7 20 chr1 166559097 166559246 -115634418 - AluJb SINE Alu -165 147 1 454 189 9 9 chr1 166559903 166560009 -115633655 - L1MB8 LINE L1 -9 6169 6064 188 271 131 57 chr1 166560396 166560518 -115633146 - MIR SINE MIR -61 147 17 342 268 212 15 chr1 166561438 166561636 -115632028 + MIR SINE MIR 5 241 -21 1964 150 23 3 chr1 166561912 166562218 -115631446 + AluSx SINE Alu 1 312 0 193 319 26 26 chr1 166562229 166562342 -115631322 + MIR SINE MIR 34 146 -116 516 266 50 46 chr1 166562803 166563021 -115630643 + MIR SINE MIR 34 252 -10 199 303 83 37 chr1 166563477 166563586 -115630078 + L3 LINE CR1 1462 1575 -2 2018 127 150 21 chr1 166563700 166564079 -115629585 - MSTA LTR MaLR 0 428 1 2139 128 3 3 chr1 166564157 166564454 -115629210 - AluSx SINE Alu -15 297 1 198 0 0 0 chr1 166564603 166564625 -115629039 + (T)n Simple_repeat Simple_repeat 1 22 0 979 181 0 0 chr1 166564785 166564940 -115628724 + AluSq SINE Alu 1 155 -158 233 111 44 0 chr1 166565042 166565087 -115628577 + C-rich Low_complexity Low_complexity 4 50 0 1694 145 35 35 chr1 166565087 166565377 -115628287 - AluSx SINE Alu -22 290 1 2473 164 36 11 chr1 166565872 166566322 -115627342 - LOR1b LTR ERV1 0 461 1 601 143 0 0 chr1 166566322 166566413 -115627251 - LOR1b-int LTR ERV1 0 8120 8030 * 1698 120 31 4 chr1 166566412 166566671 -115626993 - LOR1-int LTR ERV1 -2056 6064 5799 * 8938 119 40 9 chr1 166566647 166568092 -115625572 - LOR1-int LTR ERV1 -2582 5538 4049 478 175 0 70 chr1 166568092 166568206 -115625458 + FLAM_C SINE Alu 38 143 0 6445 117 14 58 chr1 166568229 166568920 -115624744 - LOR1-int LTR ERV1 -4058 4062 3435 1842 162 0 29 chr1 166568920 166569228 -115624436 - AluSx SINE Alu -13 299 1 6445 117 14 58 chr1 166569228 166569639 -115624025 - LOR1-int LTR ERV1 -4685 3435 3008 1311 287 43 24 chr1 166569930 166570394 -115623270 - L1MCc LINE L1 -5920 503 31 1392 208 46 58 chr1 166571259 166571653 -115622011 - MLT1B LTR MaLR -1 389 1 429 292 12 6 chr1 166572027 166572188 -115621476 - L2 LINE L2 -802 2512 2351 805 201 28 11 chr1 166572617 166572796 -115620868 + MER58 DNA MER1_type 2238 2419 -1 3332 156 28 3 chr1 166572964 166573764 -115619900 + L1PA16 LINE L1 5017 5833 -333 2117 119 3 0 chr1 166573766 166574061 -115619603 + AluSc SINE Alu 1 296 -13 1594 167 0 4 chr1 166574550 166574814 -115618850 + AluSx SINE Alu 49 311 -1 402 197 0 0 chr1 166574964 166575035 -115618629 - tRNA-Gly-GGG tRNA tRNA -3 71 1 2158 92 6 29 chr1 166575900 166576216 -115617448 - L1PA11 LINE L1 -1 6173 5865 2016 138 0 3 chr1 166576228 166576518 -115617146 + AluSc SINE Alu 1 289 -20 206 62 31 0 chr1 166576549 166576581 -115617083 + (TA)n Simple_repeat Simple_repeat 1 33 0 604 297 20 24 chr1 166577257 166577520 -115616144 + L1ME LINE L1 5293 5556 -606 1446 180 8 11 chr1 166577531 166577798 -115615866 + AluJb SINE Alu 19 284 -28 1416 178 0 8 chr1 166577830 166578071 -115615593 + AluSc SINE Alu 3 241 -68 583 274 30 13 chr1 166578071 166578301 -115615363 + L1MEc LINE L1 1042 1275 -5121 561 197 110 8 chr1 166578314 166578441 -115615223 - FLAM_C SINE Alu -2 141 2 1584 268 127 37 chr1 166578449 166579224 -115614440 + L1MEc LINE L1 1295 2138 -4258 789 11 0 0 chr1 166579416 166579506 -115614158 + (GA)n Simple_repeat Simple_repeat 2 91 0 1938 129 3 7 chr1 166579507 166579802 -115613862 + AluSc SINE Alu 6 299 -10 663 0 0 0 chr1 166580761 166580833 -115612831 + tRNA-His-CAC tRNA tRNA 1 72 -3 1253 240 61 26 chr1 166581885 166582452 -115611212 - L1ME LINE L1 -469 5695 5114 217 258 30 0 chr1 166582657 166582723 -115610941 + CT-rich Low_complexity Low_complexity 2 69 0 1784 266 55 44 chr1 166583019 166583709 -115609955 - L1ME2 LINE L1 -182 5982 5301 369 43 0 0 chr1 166583709 166583756 -115609908 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1784 266 55 44 chr1 166583756 166584177 -115609487 - L1ME2 LINE L1 -863 5301 4848 1498 163 97 17 chr1 166584177 166584466 -115609198 + AluJb SINE Alu 1 312 0 1784 266 55 44 chr1 166584466 166584626 -115609038 - L1ME2 LINE L1 -1316 4848 4691 250 197 16 16 chr1 166584627 166584688 -115608976 - L1ME3 LINE L1 -53 6109 6049 6045 81 137 65 chr1 166584773 166585864 -115607800 + MER11A LTR ERVK 1 1266 0 282 185 19 0 chr1 166585864 166585918 -115607746 - HAL1 LINE L1 -2027 480 426 1476 179 33 61 chr1 166586109 166586472 -115607192 + MLT1A1 LTR MaLR 13 365 0 388 125 0 135 chr1 166588070 166588166 -115605498 + MER20 DNA MER1_type 83 165 -54 201 218 0 36 chr1 166588680 166588735 -115604929 - MIR SINE MIR -74 188 136 425 298 36 22 chr1 166588845 166589070 -115604594 + MIR SINE MIR 31 258 -4 1536 126 49 128 chr1 166589083 166589489 -115604175 - THE1C LTR MaLR 0 375 2 441 207 81 0 chr1 166589510 166589621 -115604043 - MER94 DNA DNA -3 131 12 1612 241 51 0 chr1 166589621 166589991 -115603673 + L1MD2 LINE L1 5953 6341 -18 191 353 69 0 chr1 166590057 166590173 -115603491 + L2 LINE L2 3050 3173 -140 * 343 217 174 71 chr1 166590166 166590350 -115603314 - L2 LINE L2 -1 3312 3110 1701 212 100 61 chr1 166590355 166590845 -115602819 - MLT2B1 LTR ERVL -8 512 4 203 312 32 21 chr1 166590873 166590966 -115602698 - L2 LINE L2 -232 3081 2988 * 267 241 72 12 chr1 166590965 166591048 -115602616 + L2 LINE L2 3162 3249 -64 1438 202 155 31 chr1 166594037 166594744 -115598920 - SATR1 Satellite Satellite -3 794 1 1442 170 25 64 chr1 166596144 166596492 -115597172 - MLT1A1 LTR MaLR -20 485 13 313 180 66 0 chr1 166596676 166596737 -115596927 + HAL1 LINE L1 416 480 -2027 4180 85 184 89 chr1 166596737 166597537 -115596127 - MER11A LTR ERVK 0 1266 391 1768 178 0 0 chr1 166598022 166598320 -115595344 - AluJb SINE Alu -14 298 1 3446 233 63 84 chr1 166598396 166599100 -115594564 - L1MEc LINE L1 -4759 1637 920 1723 157 15 0 chr1 166599100 166599397 -115594267 - AluSx SINE Alu 0 307 7 3446 233 63 84 chr1 166599397 166599822 -115593842 - L1MEc LINE L1 -5476 920 488 1416 141 18 9 chr1 166599822 166600049 -115593615 - L1MC1 LINE L1 -5 6328 6100 1860 133 34 77 chr1 166600052 166600404 -115593260 - MER1B DNA MER1_type 0 337 1 3446 233 63 84 chr1 166600404 166600905 -115592759 - L1MEc LINE L1 -5910 486 35 444 280 84 18 chr1 166600945 166601127 -115592537 + MIR3 SINE MIR 3 198 -63 198 0 0 0 chr1 166601161 166601183 -115592481 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1513 188 7 7 chr1 166603290 166603578 -115590086 - AluJb SINE Alu -24 288 1 1838 156 13 0 chr1 166604373 166604674 -115588990 + AluSx SINE Alu 1 305 -7 207 277 27 71 chr1 166605245 166605357 -115588307 - MIR SINE MIR -46 216 110 1491 125 0 0 chr1 166606380 166606596 -115587068 + AluSg/x SINE Alu 93 308 -2 188 353 58 31 chr1 166606652 166606876 -115586788 + L3 LINE CR1 66 295 -1282 180 0 0 0 chr1 166607088 166607108 -115586556 + (T)n Simple_repeat Simple_repeat 1 20 0 421 316 54 30 chr1 166607559 166607727 -115585937 - MER5B DNA MER1_type 0 178 7 1863 109 60 26 chr1 166608121 166608423 -115585241 + AluSp SINE Alu 1 312 -1 237 368 104 7 chr1 166608652 166608796 -115584868 + MIR3 SINE MIR 44 201 -7 1070 207 164 71 chr1 166610066 166610532 -115583132 - MER66A LTR ERV1 0 481 100 2415 138 3 0 chr1 166610598 166610947 -115582717 - MER66A-int LTR ERV1 0 6676 6327 1169 211 74 104 chr1 166610989 166611176 -115582488 - MER66-int LTR ERV1 -1643 6113 5922 2200 75 3 7 chr1 166611176 166611471 -115582193 + AluY SINE Alu 1 294 -17 1169 211 74 104 chr1 166611471 166611483 -115582181 - MER66-int LTR ERV1 -1834 5922 5911 2034 109 0 48 chr1 166611483 166611794 -115581870 + AluSg SINE Alu 3 298 -12 1169 211 74 104 chr1 166611794 166612067 -115581597 - MER66-int LTR ERV1 -1845 5911 4548 21 36 0 0 chr1 166612261 166612289 -115581375 + GC_rich Low_complexity Low_complexity 1 28 0 655 145 60 0 chr1 166612364 166612481 -115581183 - Tigger2 DNA MER2_type -261 2457 2334 358 109 0 5 chr1 166614166 166614231 -115579433 - Alu SINE Alu -254 46 1 323 288 130 40 chr1 166614351 166614528 -115579136 + HAL1 LINE L1 1317 1509 -998 353 255 28 38 chr1 166614538 166614644 -115579020 - MER90 LTR ERV1 -5 609 505 294 278 10 10 chr1 166614639 166614736 -115578928 - MER90 LTR ERV1 -228 386 290 * 1057 126 35 0 chr1 166614736 166614910 -115578754 + AluSg/x SINE Alu 122 301 -9 2020 115 3 20 chr1 166614911 166615215 -115578449 + AluSg SINE Alu 1 299 -11 493 245 124 5 chr1 166615240 166615451 -115578213 - MER90 LTR ERV1 -346 268 1 515 135 0 0 chr1 166615499 166615573 -115578091 + AluSx SINE Alu 12 85 -227 1630 255 13 40 chr1 166615573 166616024 -115577640 - LTR2 LTR ERV1 0 449 11 1486 109 0 14 chr1 166616028 166616248 -115577416 + AluSx SINE Alu 79 295 -17 1050 225 58 52 chr1 166616248 166616613 -115577051 + HAL1 LINE L1 1542 1908 -599 2057 73 3 120 chr1 166616630 166616972 -115576692 - AluSq SINE Alu 0 303 2 251 326 92 0 chr1 166616979 166617077 -115576587 - MIR SINE MIR -122 140 34 577 104 0 0 chr1 166617393 166617470 -115576194 - tRNA-Asn-AAC tRNA tRNA 0 77 1 225 312 64 0 chr1 166617930 166618039 -115575625 + L2 LINE L2 3198 3313 0 677 191 154 90 chr1 166618319 166618695 -115574969 + ERVL-F LTR ERVL 5323 5722 -42 230 193 18 0 chr1 166618700 166618757 -115574907 + GA-rich Low_complexity Low_complexity 3 60 0 401 270 27 16 chr1 166618793 166618929 -115574735 + MLT2F LTR ERVL 1 150 -478 424 148 11 80 chr1 166619213 166619301 -115574363 + MER30 DNA MER1_type 1 82 -148 1347 114 0 94 chr1 166619361 166619616 -115574048 + AluSx SINE Alu 1 231 -81 278 233 17 95 chr1 166619724 166619840 -115573824 - AluSq/x SINE Alu -181 122 16 1101 141 12 0 chr1 166619976 166620139 -115573525 - U1 snRNA snRNA 0 165 1 378 313 7 7 chr1 166620525 166620669 -115572995 - Charlie4 DNA MER1_type -3 1958 1815 311 140 18 0 chr1 166620716 166620773 -115572891 + AluSp/q SINE Alu 240 297 -6 241 274 143 0 chr1 166620852 166621027 -115572637 + HAL1 LINE L1 1064 1263 -1244 236 211 18 0 chr1 166621171 166621228 -115572436 - AluSp/q SINE Alu -6 297 240 405 300 105 16 chr1 166621229 166621419 -115572245 + Charlie4 DNA MER1_type 1752 1958 -3 2206 106 3 0 chr1 166621633 166621935 -115571729 + AluSx SINE Alu 1 303 -9 249 75 57 0 chr1 166622038 166622091 -115571573 + (TA)n Simple_repeat Simple_repeat 1 56 0 1963 88 46 18 chr1 166622215 166622499 -115571165 + AluSx SINE Alu 1 292 -20 2437 107 51 6 chr1 166623181 166623536 -115570128 + MLT2A2 LTR ERVL 24 394 -59 1006 107 50 0 chr1 166623537 166623696 -115569968 + BC200 scRNA scRNA 1 167 -33 402 76 91 0 chr1 166623698 166623764 -115569900 + MLT2A2 LTR ERVL 382 453 0 2169 95 3 20 chr1 166623789 166624093 -115569571 + AluSp SINE Alu 1 299 -14 671 208 61 133 chr1 166624169 166624278 -115569386 - LTR49 LTR ERV1 -245 350 235 1894 124 10 7 chr1 166624278 166624404 -115569260 + AluSx SINE Alu 3 127 -185 2129 85 0 4 chr1 166624404 166624749 -115568915 + AluY SINE Alu 1 344 0 1894 124 10 7 chr1 166624749 166624910 -115568754 + AluSx SINE Alu 127 293 -19 671 208 61 133 chr1 166624910 166625094 -115568570 - LTR49 LTR ERV1 -360 235 78 326 324 17 12 chr1 166625325 166625498 -115568166 + MER41B LTR ERV1 258 431 -204 421 153 12 2 chr1 166625723 166625802 -115567862 - LTR49 LTR ERV1 -464 121 11 1043 157 36 88 chr1 166625804 166626053 -115567611 - MER31B LTR ERV1 -218 248 13 342 111 0 0 chr1 166626053 166626107 -115567557 - LTR24C LTR ERV1 0 635 582 2495 128 20 34 chr1 166626140 166626347 -115567317 - LTR24C LTR ERV1 -40 595 387 1938 150 0 10 chr1 166626347 166626661 -115567003 - AluSx SINE Alu -1 311 1 2495 128 20 34 chr1 166626661 166626891 -115566773 - LTR24C LTR ERV1 -248 387 164 1979 100 7 0 chr1 166626992 166627273 -115566391 + AluY SINE Alu 17 299 -12 958 126 6 63 chr1 166627273 166627372 -115566292 - LTR24C LTR ERV1 -470 165 79 2223 106 3 3 chr1 166627372 166627684 -115565980 - AluSp SINE Alu -1 312 1 958 126 6 63 chr1 166627684 166627759 -115565905 - LTR24C LTR ERV1 -556 79 1 1343 237 13 68 chr1 166627888 166628285 -115565379 + MLT1A2 LTR MaLR 5 374 0 419 281 11 65 chr1 166628289 166628414 -115565250 + LTR33 LTR ERVL 344 457 -64 2342 68 0 0 chr1 166628414 166628709 -115564955 + AluY SINE Alu 1 295 -16 419 281 11 65 chr1 166628709 166628768 -115564896 + LTR33 LTR ERVL 457 518 -3 927 160 0 0 chr1 166628796 166628940 -115564724 - MLT1A1 LTR MaLR 0 365 222 1890 112 0 0 chr1 166628941 166629208 -115564456 - AluY SINE Alu -44 267 1 799 214 17 40 chr1 166629208 166629223 -115564441 - MER72 LTR ERV1 -553 169 155 3636 116 51 39 chr1 166629223 166629441 -115564223 - MER51D LTR ERV1 -2 655 441 2199 87 0 3 chr1 166629441 166629739 -115563925 - AluY SINE Alu -14 297 1 3636 116 51 39 chr1 166629739 166630006 -115563658 - MER51D LTR ERV1 -216 441 158 1945 133 0 23 chr1 166630006 166630315 -115563349 - AluSx SINE Alu -10 302 1 3636 116 51 39 chr1 166630315 166630475 -115563189 - MER51D LTR ERV1 -499 158 1 799 214 17 40 chr1 166630475 166630632 -115563032 - MER72 LTR ERV1 -567 155 1 * 899 148 130 0 chr1 166630632 166630794 -115562870 - LTR49 LTR ERV1 -411 184 1 1128 165 41 5 chr1 166630798 166630992 -115562672 + MER89 LTR ERV1 357 557 -2 753 179 85 75 chr1 166631010 166631328 -115562336 + MER31B LTR ERV1 1 445 -21 561 209 40 54 chr1 166631341 166631489 -115562175 + LTR8 LTR ERV1 1 146 -545 2004 159 9 18 chr1 166631492 166631832 -115561832 + MER1B DNA MER1_type 1 337 -2 3033 135 52 45 chr1 166631837 166632414 -115561250 + LTR8A LTR ERV1 147 727 0 328 298 97 29 chr1 166632430 166632668 -115560996 - HAL1 LINE L1 -1811 696 443 3373 117 29 4 chr1 166632704 166633190 -115560474 - MER41E LTR ERV1 0 512 15 207 0 0 0 chr1 166633579 166633602 -115560062 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 261 341 36 0 chr1 166633772 166633910 -115559754 + Charlie4 DNA MER1_type 1815 1957 -4 1367 43 12 0 chr1 166634282 166634444 -115559220 + U1 snRNA snRNA 1 164 -1 326 200 77 0 chr1 166634877 166634941 -115558723 - MER45B DNA AcHobo -660 380 312 321 245 105 28 chr1 166634941 166635084 -115558580 + REP3 LTR ERV 1 154 -408 1046 116 14 4 chr1 166635583 166635870 -115557794 + AluSx SINE Alu 59 310 0 198 0 0 0 chr1 166636043 166636065 -115557599 + (TC)n Simple_repeat Simple_repeat 1 22 0 665 194 0 23 chr1 166636968 166637097 -115556567 + U1 snRNA snRNA 3 128 -37 1774 179 136 72 chr1 166637107 166637622 -115556042 + LTR4 LTR ERV1 49 596 0 256 91 0 0 chr1 166637622 166637655 -115556009 + U1 snRNA snRNA 133 165 0 691 176 255 94 chr1 166637999 166638266 -115555398 - AluJb SINE Alu -1 311 2 228 313 54 9 chr1 166639117 166639229 -115554435 + L2 LINE L2 2401 2517 -797 1882 194 78 17 chr1 166639283 166639696 -115553968 + LOR1b LTR ERV1 1 438 -23 1419 172 0 0 chr1 166640509 166640742 -115552922 + AluSx SINE Alu 1 233 -79 303 93 0 0 chr1 166640991 166641034 -115552630 + (TG)n Simple_repeat Simple_repeat 2 44 0 572 212 0 8 chr1 166641057 166641175 -115552489 - FLAM_C SINE Alu -16 117 1 2321 66 3 3 chr1 166641176 166641478 -115552186 - AluY SINE Alu -8 303 2 835 259 86 38 chr1 166641587 166641703 -115551961 + L1MEc LINE L1 1566 1675 -4721 1999 117 0 44 chr1 166641703 166642019 -115551645 + AluSg SINE Alu 1 302 -8 835 259 86 38 chr1 166642019 166642451 -115551213 + L1MEc LINE L1 1675 2140 -4256 383 0 21 0 chr1 166642844 166642891 -115550773 + (CAA)n Simple_repeat Simple_repeat 1 48 0 655 92 0 20 chr1 166643224 166643348 -115550316 + AluJb SINE Alu 205 312 0 507 132 0 0 chr1 166643952 166644028 -115549636 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 2176 74 3 7 chr1 166644037 166644336 -115549328 - AluSc SINE Alu -11 298 1 780 159 45 8 chr1 166644470 166644602 -115549062 - AluJo SINE Alu -169 143 7 1120 215 51 55 chr1 166644756 166645049 -115548615 - AluJo SINE Alu -10 292 1 513 92 0 0 chr1 166645100 166645165 -115548499 - AluSg1 SINE Alu -19 290 226 856 126 126 0 chr1 166645165 166645308 -115548356 - AluSg1 SINE Alu -148 161 1 891 196 0 0 chr1 166645443 166645606 -115548058 - FRAM SINE Alu -14 162 1 224 191 70 9 chr1 166645654 166645769 -115547895 + (TA)n Simple_repeat Simple_repeat 1 122 0 807 171 0 0 chr1 166645769 166645892 -115547772 - FLAM_C SINE Alu -10 123 1 1641 186 0 3 chr1 166645913 166646208 -115547456 - AluJb SINE Alu -18 294 1 1972 136 0 0 chr1 166647345 166647639 -115546025 - AluSx SINE Alu -18 294 1 22 35 0 0 chr1 166648073 166648102 -115545562 + AT_rich Low_complexity Low_complexity 1 29 0 1427 178 3 56 chr1 166648110 166648430 -115545234 + AluJo SINE Alu 1 303 -9 629 197 0 0 chr1 166648459 166648581 -115545083 + AluJo SINE Alu 2 123 -179 406 239 33 0 chr1 166648591 166648683 -115544981 + AluJo SINE Alu 180 274 -28 2053 126 3 0 chr1 166648803 166649113 -115544551 + AluSx SINE Alu 1 311 -1 1428 198 34 99 chr1 166649116 166649243 -115544421 + LTR56 LTR ERV1 9 143 -302 1990 138 0 0 chr1 166649243 166649541 -115544123 - AluSx SINE Alu -14 298 1 1428 198 34 99 chr1 166649541 166649878 -115543786 + LTR56 LTR ERV1 143 443 -2 3343 171 26 40 chr1 166649976 166650656 -115543008 - LTR51 LTR ERV1 0 671 1 2069 118 7 3 chr1 166651651 166651957 -115541707 - AluSc SINE Alu -2 307 1 1704 140 4 0 chr1 166652374 166652639 -115541025 + AluSg SINE Alu 1 266 -44 180 0 0 0 chr1 166652739 166652759 -115540905 + (A)n Simple_repeat Simple_repeat 1 20 0 183 80 0 0 chr1 166652794 166652819 -115540845 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 1697 90 0 8 chr1 166652819 166653053 -115540611 - AluSg1 SINE Alu -77 232 1 1170 169 4 65 chr1 166653415 166653676 -115539988 - AluJo SINE Alu -24 288 44 1845 147 10 0 chr1 166654006 166654299 -115539365 + AluSx SINE Alu 1 296 -16 2371 88 0 0 chr1 166654772 166655080 -115538584 + AluSc SINE Alu 1 308 -1 319 339 16 16 chr1 166655191 166655315 -115538349 + LTR56-int LTR ERV1 4648 4771 -2030 858 242 0 0 chr1 166655622 166655775 -115537889 - FRAM SINE Alu -13 153 1 1635 162 4 0 chr1 166656526 166656797 -115536867 + AluJb SINE Alu 21 292 -20 755 196 42 18 chr1 166656799 166656967 -115536697 + AluJb SINE Alu 136 307 -5 1999 78 26 0 chr1 166657069 166657339 -115536325 + AluY SINE Alu 8 284 -27 306 0 0 0 chr1 166657339 166657373 -115536291 + (CA)n Simple_repeat Simple_repeat 2 35 0 623 249 70 47 chr1 166657563 166657691 -115535973 + LTR56-int LTR ERV1 4776 4900 -223 1965 155 0 0 chr1 166657691 166657994 -115535670 - AluJo SINE Alu -7 305 3 623 249 70 47 chr1 166657994 166658122 -115535542 + LTR56-int LTR ERV1 4900 5038 -85 1807 200 23 33 chr1 166658178 166658608 -115535056 + LTR56 LTR ERV1 20 445 0 238 261 131 0 chr1 166658629 166658759 -115534905 + L1ME4a LINE L1 5745 5891 -273 2873 141 7 80 chr1 166658774 166659327 -115534337 + LTR8 LTR ERV1 1 513 -178 500 167 0 0 chr1 166659339 166659417 -115534247 + LTR8 LTR ERV1 614 691 0 229 224 0 0 chr1 166659434 166659483 -115534181 + L1ME4a LINE L1 5901 5949 -213 498 279 21 0 chr1 166659963 166660103 -115533561 + Charlie4 DNA MER1_type 1815 1957 -4 1399 37 0 0 chr1 166660507 166660671 -115532993 + U1 snRNA snRNA 1 164 -1 324 200 77 0 chr1 166661085 166661149 -115532515 - MER45B DNA AcHobo -660 380 312 335 176 92 84 chr1 166661149 166661280 -115532384 + REP3 LTR ERV 1 132 -430 310 317 60 49 chr1 166661966 166662149 -115531515 + MIR SINE MIR 53 237 -25 850 246 107 49 chr1 166662327 166662696 -115530968 + L1ME3 LINE L1 5667 6065 -97 1975 117 6 19 chr1 166662763 166663079 -115530585 + AluSx SINE Alu 1 312 0 2095 111 0 3 chr1 166663097 166663415 -115530249 + AluSc SINE Alu 1 309 0 296 241 113 30 chr1 166663456 166663589 -115530075 + HAL1b LINE L1 971 1114 -234 2348 78 0 0 chr1 166663591 166663948 -115529716 - AluY SINE Alu 0 357 1 386 233 0 68 chr1 166663993 166664096 -115529568 - L1MC4 LINE L1 -1333 6709 6614 309 229 8 119 chr1 166664078 166664196 -115529468 + L1MC4 LINE L1 6614 6718 -1324 * 237 307 55 18 chr1 166664241 166664404 -115529260 + HAL1b LINE L1 1180 1348 0 306 241 27 27 chr1 166664417 166664529 -115529135 + L1ME4a LINE L1 5967 6078 -43 2174 219 18 91 chr1 166664838 166665508 -115528156 - LTR8 LTR ERV1 -14 677 57 259 272 0 78 chr1 166665508 166665611 -115528053 - MIR SINE MIR -166 96 2 258 103 0 205 chr1 166665618 166665696 -115527968 + LTR8A LTR ERV1 1 62 -665 412 286 86 7 chr1 166665699 166665839 -115527825 + MIR SINE MIR 85 235 -27 1754 166 10 0 chr1 166665936 166666237 -115527427 + AluSx SINE Alu 1 304 -8 1114 222 61 77 chr1 166666567 166667082 -115526582 - MER39 LTR ERV1 0 707 8 812 158 70 12 chr1 166667168 166667339 -115526325 + AluJb SINE Alu 1 181 -131 565 63 13 0 chr1 166667395 166667474 -115526190 - HY3 scRNA scRNA -1 100 21 248 77 26 0 chr1 166667595 166667634 -115526030 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1960 92 17 20 chr1 166667634 166667927 -115525737 - AluSc SINE Alu -2 307 16 534 83 0 0 chr1 166669411 166669483 -115524181 - tRNA-Gln-CAG tRNA tRNA -3 72 1 209 108 27 0 chr1 166669924 166669961 -115523703 + CT-rich Low_complexity Low_complexity 3 40 0 216 97 0 0 chr1 166671042 166671073 -115522591 + (TC)n Simple_repeat Simple_repeat 2 32 0 211 122 41 20 chr1 166672018 166672067 -115521597 + CT-rich Low_complexity Low_complexity 3 52 0 5216 189 28 23 chr1 166672497 166674083 -115519581 - L1MC2 LINE L1 -6 6338 4749 1219 256 101 5 chr1 166674105 166674480 -115519184 - L1MCa LINE L1 -5997 429 19 2085 104 0 0 chr1 166674499 166674777 -115518887 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr1 166674785 166674808 -115518856 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1053 260 195 19 chr1 166675490 166676052 -115517612 - MLT1E2 LTR MaLR 0 593 1 740 241 40 115 chr1 166676161 166676510 -115517154 - MLT1E2-int LTR MaLR -88 1283 961 250 277 62 0 chr1 166677225 166677355 -115516309 + MIR3 SINE MIR 68 205 -3 284 364 41 8 chr1 166678426 166678547 -115515117 - L2 LINE L2 0 3272 3148 1928 129 3 3 chr1 166678918 166679204 -115514460 - AluSq SINE Alu -27 286 1 213 39 0 0 chr1 166679451 166679477 -115514187 + (CAA)n Simple_repeat Simple_repeat 2 27 0 224 186 105 70 chr1 166679574 166679660 -115514004 - L2 LINE L2 -10 3262 3174 195 42 0 0 chr1 166680197 166680221 -115513443 + (CAA)n Simple_repeat Simple_repeat 2 25 0 950 284 121 4 chr1 166681968 166682524 -115511140 + L1M4 LINE L1 4295 4915 -1231 317 233 62 23 chr1 166682649 166682778 -115510886 + L1MA4A LINE L1 5953 6086 -217 1353 177 61 3 chr1 166682681 166682975 -115510689 + L1MA4 LINE L1 5984 6294 -6 1728 186 50 154 chr1 166682989 166683907 -115509757 + L1 LINE L1 2748 3570 -2576 1706 161 11 7 chr1 166683908 166684350 -115509314 + AluSx SINE Alu 4 446 0 2121 135 0 0 chr1 166684495 166684799 -115508865 + AluSx SINE Alu 3 306 -6 510 190 89 117 chr1 166685116 166685363 -115508301 + LTR56-int LTR ERV1 4635 4874 -249 201 147 0 0 chr1 166685394 166685428 -115508236 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 367 202 8 59 chr1 166685439 166685558 -115508106 + LTR56-int LTR ERV1 4926 5038 -85 1619 230 41 10 chr1 166685608 166686047 -115507617 + LTR56 LTR ERV1 13 437 0 236 234 3 0 chr1 166686047 166686117 -115507547 + L1ME4a LINE L1 5746 5816 -346 3799 147 12 62 chr1 166686191 166686918 -115506746 + LTR8 LTR ERV1 1 691 0 229 204 0 0 chr1 166686934 166686983 -115506681 + L1ME4a LINE L1 5901 5949 -213 395 259 26 0 chr1 166687457 166687573 -115506091 + Charlie4 DNA MER1_type 1839 1957 -4 2202 89 3 0 chr1 166687580 166687872 -115505792 + AluSx SINE Alu 1 293 -19 670 219 52 0 chr1 166688281 166688436 -115505228 + U1 snRNA snRNA 2 164 -1 237 246 118 18 chr1 166688929 166689039 -115504625 + REP3 LTR ERV 1 121 -441 696 248 60 39 chr1 166689041 166689275 -115504389 + L1ME2 LINE L1 5801 6039 -125 252 255 118 54 chr1 166689353 166689557 -115504107 + HAL1b LINE L1 935 1151 -197 292 186 31 10 chr1 166689559 166689656 -115504008 + (TA)n Simple_repeat Simple_repeat 1 99 0 235 266 26 26 chr1 166689928 166690041 -115503623 + L1ME4a LINE L1 5966 6078 -43 1879 198 94 170 chr1 166690349 166691133 -115502531 - LTR8 LTR ERV1 0 727 3 634 243 51 55 chr1 166691142 166691377 -115502287 + MIR SINE MIR 2 235 -27 1001 255 37 81 chr1 166691792 166692327 -115501337 - MER39 LTR ERV1 0 707 1 670 214 31 62 chr1 166692401 166692593 -115501071 + AluJb SINE Alu 2 187 -125 632 39 0 0 chr1 166692654 166692732 -115500932 - HY3 scRNA scRNA -1 100 23 546 83 0 0 chr1 166694163 166694235 -115499429 - tRNA-Gln-CAG tRNA tRNA -3 72 1 653 137 20 20 chr1 166694537 166694683 -115498981 + CT-rich Low_complexity Low_complexity 3 148 0 399 79 53 13 chr1 166694719 166694795 -115498869 + CT-rich Low_complexity Low_complexity 2 80 0 1528 156 36 36 chr1 166694909 166695184 -115498480 - AluSx SINE Alu -37 275 1 2447 164 35 13 chr1 166695677 166696128 -115497536 - LOR1b LTR ERV1 0 461 1 601 143 0 0 chr1 166696128 166696219 -115497445 - LOR1b-int LTR ERV1 0 8120 8030 * 1900 87 4 0 chr1 166696218 166696471 -115497193 - LOR1-int LTR ERV1 -2056 6064 5811 * 8010 116 40 12 chr1 166696460 166697750 -115495914 - LOR1-int LTR ERV1 -2582 5538 4213 924 38 0 0 chr1 166697750 166697856 -115495808 + LTR2B LTR ERV1 384 489 -1 2541 103 49 0 chr1 166697857 166698226 -115495438 + Harlequin LTR ERV1 1 387 -6509 779 145 21 35 chr1 166698210 166698355 -115495309 + HERVE LTR ERV1 255 397 -7416 * 4980 66 12 11 chr1 166698335 166698975 -115494689 + HERVE LTR ERV1 263 903 -5993 3557 70 65 2 chr1 166698960 166699487 -115494177 + HERVE LTR ERV1 1572 2131 -4765 * 1089 153 6 0 chr1 166699492 166699669 -115493995 - LOR1-int LTR ERV1 -3894 4226 4049 506 219 0 0 chr1 166699669 166699765 -115493899 + AluJb SINE Alu 38 133 -179 342 182 0 0 chr1 166699765 166699831 -115493833 + A-rich Low_complexity Low_complexity 1 66 0 401 116 0 14 chr1 166699831 166699900 -115493764 - LOR1-int LTR ERV1 -4058 4062 3995 6707 106 9 11 chr1 166699949 166700513 -115493151 - LOR1-int LTR ERV1 -4136 3984 3421 1710 167 22 35 chr1 166700513 166700825 -115492839 - AluSx SINE Alu 0 312 5 6707 106 9 11 chr1 166700825 166701237 -115492427 - LOR1-int LTR ERV1 -4699 3421 3010 535 267 62 38 chr1 166701392 166701660 -115492004 - L1MCc LINE L1 -249 6714 257 1905 156 0 0 chr1 166701672 166701960 -115491704 + AluSc SINE Alu 1 288 -21 621 100 0 0 chr1 166701961 166702051 -115491613 + (TA)n Simple_repeat Simple_repeat 1 90 0 1823 278 74 36 chr1 166702743 166702985 -115490679 + L1ME2 LINE L1 5319 5550 -614 1938 127 7 21 chr1 166702985 166703314 -115490350 + AluSx SINE Alu 5 329 0 1823 278 74 36 chr1 166703314 166703876 -115489788 + L1ME2 LINE L1 5550 6155 -9 27 29 0 0 chr1 166703890 166703924 -115489740 + AT_rich Low_complexity Low_complexity 1 34 0 430 141 0 0 chr1 166704365 166704436 -115489228 - tRNA-His-CAC tRNA tRNA -4 71 1 1365 129 5 0 chr1 166704896 166705098 -115488566 + AluJb SINE Alu 78 280 -32 189 0 0 0 chr1 166705099 166705120 -115488544 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 467 97 56 0 chr1 166705726 166705798 -115487866 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 252 266 5 27 chr1 166707228 166707334 -115486330 - L1ME LINE L1 -370 5794 5690 2688 194 89 23 chr1 166707805 166708425 -115485239 - MER67B LTR ERV1 0 661 1 1105 244 26 17 chr1 166708933 166709275 -115484389 + MLT2B1 LTR ERVL 1 423 -97 402 21 0 0 chr1 166709275 166709322 -115484342 + (TG)n Simple_repeat Simple_repeat 2 48 0 3429 179 22 78 chr1 166709618 166710514 -115483150 - L1MD1 LINE L1 0 6242 5397 244 100 20 100 chr1 166710516 166710566 -115483098 - MLT1B LTR MaLR -344 46 1 6161 235 52 30 chr1 166710566 166712719 -115480945 - L1MDa LINE L1 -3460 3080 866 261 250 31 0 chr1 166713686 166713750 -115479914 - tRNA-Lys-AAG tRNA tRNA -9 67 2 461 153 0 0 chr1 166714175 166714247 -115479417 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 322 335 51 6 chr1 166714489 166714665 -115478999 - MIR SINE MIR -1 261 78 303 225 0 38 chr1 166716733 166716813 -115476851 + L1MEc LINE L1 343 419 -6302 1465 184 0 15 chr1 166716847 166717114 -115476550 + AluJb SINE Alu 21 283 -29 447 19 0 0 chr1 166717117 166717169 -115476495 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 1427 177 0 8 chr1 166717169 166717412 -115476252 + AluSc SINE Alu 1 241 -68 539 274 35 17 chr1 166717412 166717642 -115476022 + L1MEc LINE L1 1367 1600 -5121 530 185 108 31 chr1 166717655 166717785 -115475879 - FLAM_C SINE Alu -2 141 2 982 252 58 58 chr1 166717790 166718144 -115475520 + L1MEc LINE L1 1566 1918 -4803 2531 68 0 3 chr1 166718144 166718453 -115475211 + AluY SINE Alu 1 308 -3 982 252 58 58 chr1 166718453 166718892 -115474772 + L1MEc LINE L1 1918 2463 -4258 216 67 0 0 chr1 166719081 166719111 -115474553 + (GA)n Simple_repeat Simple_repeat 2 31 0 2119 114 0 0 chr1 166719114 166719411 -115474253 + AluSc SINE Alu 2 298 -11 663 0 0 0 chr1 166720358 166720430 -115473234 + tRNA-His-CAC tRNA tRNA 1 72 -3 1253 240 61 26 chr1 166721482 166722049 -115471615 - L1ME LINE L1 -469 5695 5114 217 258 30 0 chr1 166722254 166722320 -115471344 + CT-rich Low_complexity Low_complexity 2 69 0 1806 256 50 68 chr1 166722615 166723769 -115469895 - L1ME2 LINE L1 -182 5982 4852 1472 166 97 17 chr1 166723769 166724058 -115469606 + AluJb SINE Alu 1 312 0 1806 256 50 68 chr1 166724058 166724218 -115469446 - L1ME2 LINE L1 -1312 4852 4691 250 197 16 16 chr1 166724219 166724280 -115469384 - L1ME3 LINE L1 -53 6109 6049 3629 86 9 2 chr1 166724365 166725099 -115468565 + MER11A LTR ERVK 1 976 -290 344 269 96 32 chr1 166925099 166925255 -115268409 - L3 LINE CR1 -280 1297 1132 35 105 0 0 chr1 166925255 166925388 -115268276 + AT_rich Low_complexity Low_complexity 1 133 0 15037 195 28 31 chr1 166925388 166927109 -115266555 - L1PB1 LINE L1 -2 6865 5140 225 0 0 0 chr1 166927109 166927134 -115266530 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 15037 195 28 31 chr1 166927134 166927807 -115265857 - L1PB1 LINE L1 -1727 5140 4466 2302 76 13 13 chr1 166927807 166928109 -115265555 + AluY SINE Alu 1 302 -9 15037 195 28 31 chr1 166928109 166928862 -115264802 - L1PB1 LINE L1 -2401 4466 3712 2365 86 0 3 chr1 166928862 166929153 -115264511 - AluY SINE Alu -21 290 1 15037 195 28 31 chr1 166929153 166930247 -115263417 - L1PB1 LINE L1 -3155 3712 2619 2349 78 10 0 chr1 166930247 166930542 -115263122 - AluY SINE Alu -11 300 3 15037 195 28 31 chr1 166930542 166930962 -115262702 - L1PB1 LINE L1 -4248 2619 2199 276 100 0 0 chr1 166931630 166931670 -115261994 + (T)n Simple_repeat Simple_repeat 1 40 0 278 298 62 34 chr1 166932383 166932552 -115261112 - MIR SINE MIR -62 146 19 730 225 132 102 chr1 166934279 166934406 -115259258 + MER102b DNA MER1_type 7 129 -1299 1864 148 18 0 chr1 166934406 166934690 -115258974 + AluJb SINE Alu 1 289 -23 730 225 132 102 chr1 166934690 166934887 -115258777 + MER102b DNA MER1_type 129 341 0 14296 31 2 0 chr1 166936443 166938117 -115255547 - L1P LINE L1 -900 5246 3569 570 272 29 67 chr1 166938659 166938898 -115254766 - MIR SINE MIR -13 249 20 224 295 0 0 chr1 166938936 166938997 -115254667 - L2 LINE L2 -2 3311 3251 1948 122 36 16 chr1 166939022 166939326 -115254338 + AluSg SINE Alu 1 310 0 249 327 30 40 chr1 166939451 166939552 -115254112 + L2 LINE L2 3182 3281 -32 1549 222 49 15 chr1 166939590 166940178 -115253486 - MER21B LTR ERV1 -58 805 98 501 235 6 32 chr1 166940146 166940312 -115253352 - MER21B LTR ERV1 -404 201 1 * 207 189 0 0 chr1 166940336 166940373 -115253291 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 188 122 24 0 chr1 166941020 166941061 -115252603 + (CA)n Simple_repeat Simple_repeat 1 42 0 191 367 8 17 chr1 166941601 166941721 -115251943 - L2 LINE L2 -43 3270 3152 503 250 32 39 chr1 166941756 166941912 -115251752 + MIR SINE MIR 21 175 -87 277 160 7 0 chr1 166941913 166941972 -115251692 - L1ME1 LINE L1 -1 6183 6116 758 153 9 0 chr1 166941978 166942089 -115251575 + FLAM_C SINE Alu 8 119 -24 267 97 0 129 chr1 166942395 166942457 -115251207 + MIR SINE MIR 114 167 -95 433 312 97 7 chr1 166942788 166942942 -115250722 + L2 LINE L2 3142 3309 -4 256 221 0 91 chr1 166942950 166942968 -115250696 - MIR SINE MIR -126 136 118 1978 159 0 6 chr1 166942968 166943282 -115250382 + AluJb SINE Alu 1 312 0 256 221 0 91 chr1 166943282 166943340 -115250324 - MIR SINE MIR -144 118 67 300 319 168 0 chr1 166943897 166944010 -115249654 + MER115 DNA AcHobo 5 136 -557 2278 104 0 3 chr1 166945921 166946220 -115247444 + AluSx SINE Alu 1 298 -14 273 295 75 25 chr1 166946472 166946606 -115247058 - MIR SINE MIR -56 152 26 1897 121 8 82 chr1 166947890 166948056 -115245608 + L1MA5 LINE L1 5963 6089 -211 2009 138 0 19 chr1 166948056 166948367 -115245297 - AluSx SINE Alu -7 305 1 1897 121 8 82 chr1 166948367 166948565 -115245099 + L1MA5 LINE L1 6089 6300 0 195 298 18 0 chr1 166948757 166948814 -115244850 + MIR SINE MIR 99 156 -106 1014 65 26 7 chr1 166950157 166950312 -115243352 + (TTTC)n Simple_repeat Simple_repeat 2 159 0 1911 147 3 0 chr1 166950316 166950601 -115243063 - AluJb SINE Alu -26 286 1 374 214 92 0 chr1 166950668 166950766 -115242898 + MIR SINE MIR 47 153 -109 418 207 164 36 chr1 166950960 166951100 -115242564 - MIR3 SINE MIR -15 193 36 242 301 214 24 chr1 166951394 166951726 -115241938 - L2 LINE L2 -4 3309 2915 229 271 141 0 chr1 166951866 166951951 -115241713 - L2 LINE L2 -1 3271 3175 528 299 60 28 chr1 166952115 166952332 -115241332 + MIR SINE MIR 38 261 -1 1024 178 16 16 chr1 166953108 166953293 -115240371 + MER5A DNA MER1_type 5 189 0 318 297 118 4 chr1 166953572 166953721 -115239943 - MIR SINE MIR -86 122 3 2262 108 0 0 chr1 166953993 166954298 -115239366 + AluSx SINE Alu 1 305 -7 828 296 97 30 chr1 166954330 166955163 -115238501 - L1ME4a LINE L1 -95 6026 5130 706 237 59 12 chr1 166955400 166955569 -115238095 + MER8 DNA MER2_type 1 177 -62 460 159 0 0 chr1 166955616 166955685 -115237979 - Tigger2 DNA MER2_type -2648 70 2 1988 136 23 16 chr1 166955923 166956232 -115237432 - AluSx SINE Alu -1 311 1 200 114 0 29 chr1 166956284 166956319 -115237345 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 542 142 9 62 chr1 166956468 166956581 -115237083 + MLT1D LTR MaLR 1 107 -398 298 292 10 10 chr1 166957100 166957196 -115236468 + MIR SINE MIR 109 204 -58 466 141 94 12 chr1 166957605 166957690 -115235974 + AluS SINE Alu 2 93 -220 254 320 112 19 chr1 166957864 166958070 -115235594 + L2 LINE L2 2830 3054 -218 208 274 0 0 chr1 166958105 166958156 -115235508 + L2 LINE L2 3136 3186 -86 21 0 0 0 chr1 166959369 166959390 -115234274 + AT_rich Low_complexity Low_complexity 1 21 0 393 256 173 45 chr1 166960866 166961022 -115232642 + MIR SINE MIR 57 232 -30 615 276 44 53 chr1 166961068 166961171 -115232493 + MIR SINE MIR 37 139 -123 1685 155 30 44 chr1 166961171 166961468 -115232196 - AluJo SINE Alu -19 293 1 615 276 44 53 chr1 166961468 166961592 -115232072 + MIR SINE MIR 139 262 0 642 198 0 0 chr1 166962752 166962858 -115230806 - L2 LINE L2 -5 3267 3162 2280 102 10 0 chr1 166962922 166963225 -115230439 + AluSx SINE Alu 1 306 -6 445 326 92 0 chr1 166963789 166963985 -115229679 - MIR SINE MIR -3 259 46 2792 233 0 36 chr1 166964881 166965456 -115228208 - MLT2B3 LTR ERVL 0 554 1 25 31 0 0 chr1 166966135 166966167 -115227497 + AT_rich Low_complexity Low_complexity 1 32 0 5614 222 54 25 chr1 166967165 166968718 -115224946 + L1ME1 LINE L1 2425 3931 -2235 2356 85 20 0 chr1 166968718 166969013 -115224651 + AluSc SINE Alu 1 301 -8 5614 222 54 25 chr1 166969013 166970351 -115223313 + L1ME1 LINE L1 3931 6113 -53 1285 113 6 0 chr1 166970355 166970532 -115223132 - AluJb SINE Alu 0 312 135 731 156 9 0 chr1 166970647 166970756 -115222908 - AluJb SINE Alu -39 273 164 414 200 53 0 chr1 166970792 166970887 -115222777 + L1MC4 LINE L1 7800 7899 -143 25 51 0 0 chr1 166970933 166970972 -115222692 + AT_rich Low_complexity Low_complexity 1 39 0 511 297 16 0 chr1 166971903 166972031 -115221633 - L2 LINE L2 0 3272 3143 238 348 45 0 chr1 166972134 166972223 -115221441 + MIR SINE MIR 20 112 -150 26439 113 18 46 chr1 166972234 166977930 -115215734 + L1P3 LINE L1 12 5453 -719 3321 40 2 2 chr1 166977936 166978335 -115215329 + L1PA7 LINE L1 5254 5652 -502 4013 60 2 0 chr1 166978445 166978944 -115214720 + L1PA7 LINE L1 5654 6153 -1 244 238 8 103 chr1 166978944 166979070 -115214594 + MIR SINE MIR 99 212 -50 239 291 77 8 chr1 166979167 166979284 -115214380 + L3 LINE CR1 619 743 -834 37789 92 12 8 chr1 166979294 166985415 -115208249 + L1PA6 LINE L1 11 6154 0 262 259 59 0 chr1 166985468 166985553 -115208111 + L3 LINE CR1 792 881 -696 224 212 30 30 chr1 166986122 166986188 -115207476 + L2 LINE L2 3245 3310 -3 * 234 238 140 55 chr1 166986184 166986348 -115207316 + MIR SINE MIR 13 190 -72 277 301 71 89 chr1 166986710 166987135 -115206529 - L2 LINE L2 -8 3264 2848 1327 224 77 91 chr1 166987152 166987648 -115206016 + MLT1E LTR MaLR 5 590 -3 258 349 104 10 chr1 166987934 166988232 -115205432 - L2 LINE L2 -737 2577 2252 902 194 48 0 chr1 166988612 166988818 -115204846 + L1MB2 LINE L1 5949 6164 -7 265 303 37 18 chr1 166988993 166989102 -115204562 - MIR3 SINE MIR -96 112 2 201 279 39 39 chr1 166989190 166989294 -115204370 + L2 LINE L2 3210 3313 0 2055 203 91 22 chr1 166989424 166990157 -115203507 + L1MCa LINE L1 22 784 -5123 317 141 172 16 chr1 166990168 166990232 -115203432 + LTR32 LTR ERVL 15 88 -383 809 155 92 29 chr1 166990233 166990407 -115203257 + LTR32 LTR ERVL 285 469 -2 318 229 0 46 chr1 166990407 166990516 -115203148 + L1MCa LINE L1 805 908 -5518 6406 45 1 0 chr1 166990667 166991431 -115202233 - L1PA4 LINE L1 0 6155 5391 1908 183 49 33 chr1 166992156 166992582 -115201082 - MER63B DNA MER1_type 0 436 4 1747 221 96 17 chr1 166994069 166994448 -115199216 - L1MC4 LINE L1 -261 7781 7433 243 0 0 0 chr1 166994448 166994475 -115199189 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2218 104 0 0 chr1 166994479 166994759 -115198905 - AluSq SINE Alu -33 280 1 1747 221 96 17 chr1 166994759 166995461 -115198203 - L1MC4 LINE L1 -611 7431 6467 720 213 14 140 chr1 166995710 166996081 -115197583 + MLT1E-int LTR MaLR 996 1319 -52 1511 181 179 136 chr1 166996094 166996436 -115197228 - MLT1B LTR MaLR 0 390 64 318 50 0 0 chr1 166996436 166996476 -115197188 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2155 108 0 7 chr1 166996479 166996767 -115196897 - AluSc SINE Alu -23 286 1 1511 181 179 136 chr1 166996767 166996868 -115196796 - MLT1B LTR MaLR -327 63 1 230 250 18 0 chr1 166996868 166996924 -115196740 + MLT1E-int LTR MaLR 1309 1365 -6 2047 223 111 17 chr1 166996930 166997472 -115196192 + MLT1E LTR MaLR 1 593 0 305 329 62 0 chr1 166997720 166997881 -115195783 - L2 LINE L2 -601 2713 2543 290 274 80 59 chr1 166997882 166998119 -115195545 - L1ME4a LINE L1 -68 6053 5812 22 0 0 0 chr1 166998581 166998603 -115195061 + AT_rich Low_complexity Low_complexity 1 22 0 195 139 0 0 chr1 166998746 166998782 -115194882 + (CA)n Simple_repeat Simple_repeat 2 37 0 2566 68 7 0 chr1 166999473 166999780 -115193884 + AluY SINE Alu 1 309 -2 429 281 37 55 chr1 166999782 166999999 -115193665 - MIR SINE MIR -48 214 2 400 248 30 0 chr1 167000134 167000235 -115193429 + MIR SINE MIR 63 166 -96 201 268 73 24 chr1 167000922 167001004 -115192660 - L2 LINE L2 -17 3255 3170 2291 132 187 79 chr1 167001429 167001959 -115191705 - LTR18B LTR ERVL -27 587 1 1912 140 86 82 chr1 167002249 167002452 -115191212 - MLT1C LTR MaLR 0 467 266 2045 125 34 7 chr1 167002452 167002748 -115190916 + AluSx SINE Alu 1 304 -8 1912 140 86 82 chr1 167002748 167003009 -115190655 - MLT1C LTR MaLR -201 266 1 1737 157 64 80 chr1 167003479 167003918 -115189746 + MSTB1 LTR MaLR 1 432 0 27 29 0 0 chr1 167003940 167003974 -115189690 + AT_rich Low_complexity Low_complexity 1 34 0 1991 138 3 0 chr1 167004274 167004577 -115189087 + AluSx SINE Alu 1 304 0 1869 221 61 5 chr1 167006070 167006478 -115187186 - MER21-int LTR ERV1 -1760 2431 2001 2144 133 7 0 chr1 167006480 167006789 -115186875 + AluSx SINE Alu 1 311 -1 729 259 45 10 chr1 167006831 167007032 -115186632 + LTR8 LTR ERV1 1 208 -483 224 329 82 17 chr1 167007137 167007368 -115186296 + L2 LINE L2 2281 2526 -788 674 275 14 0 chr1 167007401 167007543 -115186121 + FRAM SINE Alu 4 147 -19 434 194 0 50 chr1 167007543 167008118 -115185546 + (TA)n Simple_repeat Simple_repeat 1 546 0 361 345 78 12 chr1 167008132 167008390 -115185274 + L2 LINE L2 2573 2847 -467 809 212 42 0 chr1 167008472 167008637 -115185027 - FRAM SINE Alu -5 171 1 218 206 0 32 chr1 167009243 167009306 -115184358 + CT-rich Low_complexity Low_complexity 3 63 0 897 225 121 33 chr1 167010476 167010783 -115182881 + L1ME3A LINE L1 5825 6158 -12 1325 201 28 25 chr1 167010847 167011248 -115182416 + LTR47A LTR ERVL 1 452 0 268 310 23 0 chr1 167011799 167011886 -115181778 + LTR67 LTR ERVL 469 557 0 282 319 0 0 chr1 167012512 167012584 -115181080 + L3 LINE CR1 324 395 -1182 661 317 102 0 chr1 167012620 167012729 -115180935 + L3 LINE CR1 510 607 -970 2913 64 106 0 chr1 167012729 167013134 -115180530 - LTR7 LTR ERV1 -2 448 1 661 317 102 0 chr1 167013134 167013270 -115180394 + L3 LINE CR1 607 780 -797 3184 177 192 134 chr1 167013483 167013843 -115179821 - L1PBa LINE L1 -4568 2295 1958 1158 63 0 0 chr1 167013843 167013986 -115179678 - AluY SINE Alu 0 311 169 3184 177 192 134 chr1 167013986 167015189 -115178475 - L1PBa LINE L1 -4905 1958 490 22 70 0 0 chr1 167015750 167015793 -115177871 + AT_rich Low_complexity Low_complexity 1 43 0 363 323 19 31 chr1 167015833 167015994 -115177670 - L2 LINE L2 -189 3083 2925 1953 169 49 0 chr1 167016764 167017112 -115176552 + MLT1A1 LTR MaLR 1 365 0 2113 119 16 7 chr1 167017229 167017532 -115176132 + AluSx SINE Alu 1 306 -6 560 190 159 18 chr1 167018048 167018211 -115175453 - MIR SINE MIR 0 262 77 359 277 51 0 chr1 167019741 167019878 -115173786 - MIR SINE MIR -5 257 114 203 233 14 55 chr1 167021092 167021165 -115172499 - L2 LINE L2 -67 3205 3136 1448 175 8 0 chr1 167021352 167021586 -115172078 - MER46A DNA MER2_type 0 236 1 258 116 0 0 chr1 167021714 167021757 -115171907 + (TC)n Simple_repeat Simple_repeat 2 44 0 316 270 0 14 chr1 167022452 167022526 -115171138 + MER5A DNA MER1_type 7 79 -110 294 196 0 0 chr1 167022535 167022586 -115171078 - MLT1L LTR MaLR -6 609 559 1306 178 55 15 chr1 167022635 167022973 -115170691 + MSTD LTR MaLR 1 365 0 7397 213 21 58 chr1 167022975 167023570 -115170094 + MSTD-int LTR MaLR 2 617 -1118 2543 75 0 0 chr1 167023570 167023876 -115169788 - AluY SINE Alu -4 307 2 7397 213 21 58 chr1 167023876 167025080 -115168584 + MSTD-int LTR MaLR 617 1735 0 2076 145 16 89 chr1 167025080 167025507 -115168157 + MSTD LTR MaLR 1 396 0 254 178 123 14 chr1 167025542 167025615 -115168049 - MLT1L LTR MaLR -211 404 324 1374 211 102 3 chr1 167025651 167025936 -115167728 + MER45B DNA AcHobo 1 313 -727 3263 141 53 14 chr1 167025939 167026500 -115167164 - MER34C LTR ERV1 0 585 3 438 129 0 14 chr1 167026500 167026570 -115167094 - MER34C LTR ERV1 -512 73 5 283 310 35 17 chr1 167027070 167027186 -115166478 - MIR3 SINE MIR -44 164 47 21 0 0 0 chr1 167027513 167027534 -115166130 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 167027999 167028021 -115165643 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr1 167028854 167028883 -115164781 + (CA)n Simple_repeat Simple_repeat 2 30 0 555 249 79 12 chr1 167028884 167029049 -115164615 + MER112 DNA MER1_type 85 260 0 199 285 22 88 chr1 167030132 167030269 -115163395 + MIR SINE MIR 80 207 -55 1430 265 47 26 chr1 167030289 167030757 -115162907 - L2 LINE L2 0 3313 2836 563 271 55 87 chr1 167031095 167031405 -115162259 + MLT1I LTR MaLR 99 398 -11 210 329 183 18 chr1 167031406 167031570 -115162094 - MIR SINE MIR -35 227 37 232 246 18 0 chr1 167031720 167031777 -115161887 + (CACTC)n Simple_repeat Simple_repeat 2 59 0 227 196 22 0 chr1 167031991 167032037 -115161627 - L2 LINE L2 -17 3255 3209 8945 112 13 1 chr1 167032110 167033377 -115160287 + HSMAR1 DNA Mariner 1 1283 -4 315 320 19 32 chr1 167033930 167034086 -115159578 - MIR SINE MIR -6 256 103 23 0 0 0 chr1 167034382 167034405 -115159259 + AT_rich Low_complexity Low_complexity 1 23 0 224 235 12 71 chr1 167034887 167034972 -115158692 + L2 LINE L2 1894 1973 -1341 2097 255 143 18 chr1 167035004 167035139 -115158525 + L2 LINE L2 2066 2183 -1130 1973 127 0 28 chr1 167035139 167035461 -115158203 - AluSx SINE Alu 0 314 1 2097 255 143 18 chr1 167035461 167036337 -115157327 + L2 LINE L2 2183 3207 -106 901 241 73 9 chr1 167036357 167036589 -115157075 - MIR SINE MIR 0 262 16 252 211 0 0 chr1 167036608 167036660 -115157004 + L2 LINE L2 3221 3272 0 367 274 57 0 chr1 167036687 167036811 -115156853 - MIR SINE MIR -98 164 34 2227 112 3 3 chr1 167037618 167037921 -115155743 - AluSp SINE Alu -10 303 1 220 213 8 180 chr1 167038043 167038098 -115155566 + L2 LINE L2 3139 3163 -109 2322 83 6 22 chr1 167038098 167038411 -115155253 - AluSp SINE Alu -5 308 1 220 213 8 180 chr1 167038411 167038477 -115155187 + L2 LINE L2 3163 3239 -33 279 333 58 14 chr1 167039854 167039992 -115153672 + MIR SINE MIR 48 191 -71 856 215 134 21 chr1 167040248 167040532 -115153132 - L2 LINE L2 0 3313 2998 480 187 22 67 chr1 167040804 167040938 -115152726 + MER91B DNA MER1_type 2 129 -61 269 317 30 30 chr1 167040956 167041057 -115152607 + MER91B DNA MER1_type 90 190 0 241 219 209 19 chr1 167041718 167041823 -115151841 + L2 LINE L2 3138 3262 -10 214 268 0 0 chr1 167043069 167043125 -115150539 + A-rich Low_complexity Low_complexity 3 58 0 524 237 40 13 chr1 167043422 167043574 -115150090 - MIR SINE MIR -70 192 37 313 231 91 28 chr1 167043644 167043787 -115149877 - Charlie7 DNA MER1_type -48 2564 2413 242 182 36 91 chr1 167043803 167043913 -115149751 + L1MC5 LINE L1 7832 7935 -26 773 258 14 14 chr1 167044144 167044357 -115149307 + MIR SINE MIR 1 213 -49 2356 98 0 25 chr1 167044554 167044872 -115148792 - AluY SINE Alu -1 310 1 369 340 26 0 chr1 167045015 167045168 -115148496 + MIR3 SINE MIR 37 193 -15 322 205 34 81 chr1 167045708 167045889 -115147775 + HAL1b LINE L1 1187 6121 0 547 282 87 5 chr1 167046915 167047110 -115146554 - MIR SINE MIR -48 214 4 383 289 105 0 chr1 167048181 167048333 -115145331 + MIR SINE MIR 20 187 -75 1200 145 106 28 chr1 167048648 167048903 -115144761 + ORSL DNA AcHobo 1 275 0 201 286 18 0 chr1 167049208 167049264 -115144400 - L2 LINE L2 -230 3042 2986 2324 169 19 37 chr1 167049337 167049567 -115144097 - MSTB LTR MaLR -2 424 204 2153 134 0 0 chr1 167049567 167049859 -115143805 - AluSg SINE Alu -18 292 1 2324 169 19 37 chr1 167049859 167050060 -115143604 - MSTB LTR MaLR -222 204 1 386 241 37 9 chr1 167050226 167050334 -115143330 - MIR SINE MIR -44 218 108 497 266 25 84 chr1 167050755 167050992 -115142672 - MIR SINE MIR -8 254 32 1898 149 7 27 chr1 167051289 167051590 -115142074 - AluJb SINE Alu -17 295 1 349 191 199 37 chr1 167051862 167051998 -115141666 + MIR SINE MIR 105 262 0 358 270 9 17 chr1 167052239 167052354 -115141310 + CT-rich Low_complexity Low_complexity 2 115 0 223 274 197 17 chr1 167052413 167052530 -115141134 - L3 LINE CR1 -84 1493 1356 820 225 55 5 chr1 167052541 167052741 -115140923 + MIR SINE MIR 28 237 -25 230 293 122 14 chr1 167052754 167052901 -115140763 - L3 LINE CR1 -222 1355 1193 314 276 0 0 chr1 167053481 167053557 -115140107 - MIR SINE MIR -118 144 69 206 303 15 0 chr1 167053984 167054050 -115139614 + CT-rich Low_complexity Low_complexity 3 69 0 245 231 0 15 chr1 167054053 167054118 -115139546 + LTR67 LTR ERVL 490 553 -4 2308 178 25 16 chr1 167054637 167055080 -115138584 + MER66A LTR ERV1 29 475 -3 236 263 23 68 chr1 167055108 167055241 -115138423 + L2 LINE L2 2932 3058 -214 601 250 120 0 chr1 167055318 167055510 -115138154 + MIR SINE MIR 14 228 -34 227 278 90 5 chr1 167059398 167059503 -115134161 + MIR SINE MIR 86 208 0 248 306 24 12 chr1 167060381 167060473 -115133191 - MIR SINE MIR -105 103 20 205 289 207 25 chr1 167060980 167061101 -115132563 + L2 LINE L2 3128 3270 -2 244 250 62 0 chr1 167061211 167061291 -115132373 - MER91B DNA MER1_type -105 85 1 282 209 35 0 chr1 167061436 167061522 -115132142 + (TA)n Simple_repeat Simple_repeat 2 90 0 250 303 254 6 chr1 167061531 167061696 -115131968 - MIR SINE MIR -16 246 41 2481 109 16 21 chr1 167061895 167062272 -115131392 - THE1C LTR MaLR 0 375 1 1907 109 0 0 chr1 167062787 167063035 -115130629 + AluSg SINE Alu 56 303 -7 443 215 28 19 chr1 167063998 167064105 -115129559 + MIR SINE MIR 75 182 -80 2070 136 11 48 chr1 167064147 167064522 -115129142 + L1PA16 LINE L1 5805 6165 -1 25 0 0 0 chr1 167064522 167064547 -115129117 + AT_rich Low_complexity Low_complexity 1 25 0 212 286 20 0 chr1 167064896 167064945 -115128719 + L2 LINE L2 3211 3260 -12 867 70 0 0 chr1 167065971 167066086 -115127578 + (CATTG)n Simple_repeat Simple_repeat 3 117 0 845 165 99 0 chr1 167066134 167066316 -115127348 - MIR SINE MIR -42 220 21 236 286 136 41 chr1 167066554 167066701 -115126963 + MIR3 SINE MIR 36 196 -12 415 256 29 111 chr1 167066996 167067203 -115126461 + MIR SINE MIR 53 242 -20 236 263 0 50 chr1 167067782 167067862 -115125802 + GA-rich Low_complexity Low_complexity 4 79 0 189 0 0 0 chr1 167068447 167068468 -115125196 + (T)n Simple_repeat Simple_repeat 1 21 0 337 287 8 16 chr1 167068749 167068878 -115124786 + MIR3 SINE MIR 81 208 0 191 341 24 0 chr1 167069768 167069853 -115123811 - MIR SINE MIR -55 153 67 460 183 43 9 chr1 167070623 167070738 -115122926 + MIR SINE MIR 78 196 -66 237 303 0 53 chr1 167070849 167070925 -115122739 + MIR SINE MIR 33 104 -104 250 306 93 9 chr1 167070945 167071053 -115122611 - MIR3 SINE MIR -38 170 54 376 305 155 5 chr1 167071716 167071903 -115121761 - MIR SINE MIR -6 256 42 522 266 113 15 chr1 167072359 167072585 -115121079 + MIR SINE MIR 17 262 0 234 340 29 10 chr1 167072586 167072689 -115120975 + MIR3 SINE MIR 101 205 -3 23 0 0 0 chr1 167072991 167073014 -115120650 + AT_rich Low_complexity Low_complexity 1 23 0 497 256 164 5 chr1 167073446 167073560 -115120104 + MIR SINE MIR 3 97 -165 1900 160 0 35 chr1 167073560 167073872 -115119792 + AluJb SINE Alu 1 301 -11 497 256 164 5 chr1 167073872 167073976 -115119688 + MIR SINE MIR 97 256 -6 192 267 83 0 chr1 167075031 167075091 -115118573 - L2 LINE L2 -67 3205 3141 203 255 0 0 chr1 167075220 167075267 -115118397 + L3 LINE CR1 1294 1340 -237 241 347 141 0 chr1 167075886 167076007 -115117657 + MIR SINE MIR 48 185 -77 21 0 0 0 chr1 167076139 167076160 -115117504 + AT_rich Low_complexity Low_complexity 1 21 0 2323 109 3 0 chr1 167076414 167076717 -115116947 - AluSx SINE Alu -8 304 1 2265 110 0 3 chr1 167077149 167077450 -115116214 + AluSx SINE Alu 1 300 -12 330 267 17 60 chr1 167077949 167078065 -115115599 + L2 LINE L2 3199 3309 -4 244 320 8 23 chr1 167078980 167079108 -115114556 + CT-rich Low_complexity Low_complexity 3 128 0 415 306 153 9 chr1 167079141 167079357 -115114307 - MIR SINE MIR 0 262 16 286 273 23 23 chr1 167079365 167079453 -115114211 + CT-rich Low_complexity Low_complexity 3 90 0 199 200 36 18 chr1 167079972 167080027 -115113637 + L3 LINE CR1 1520 1575 -2 255 240 27 0 chr1 167080091 167080166 -115113498 - MLT1L LTR MaLR -50 565 489 290 288 137 79 chr1 167080608 167080886 -115112778 - L2 LINE L2 -1 3271 2978 407 283 82 22 chr1 167081242 167081426 -115112238 - L3 LINE CR1 -141 1436 1242 304 213 149 0 chr1 167081458 167081552 -115112112 - MIR SINE MIR -71 191 84 444 294 45 6 chr1 167081588 167081765 -115111899 + MER5A DNA MER1_type 3 186 -3 329 235 86 103 chr1 167085138 167085381 -115108283 + MIR SINE MIR 24 262 0 244 325 67 33 chr1 167085539 167085659 -115108005 - L2 LINE L2 -17 3255 3132 1057 206 26 13 chr1 167085684 167085912 -115107752 + MIR SINE MIR 11 241 -21 2518 180 23 21 chr1 167085914 167086397 -115107267 + LTR42 LTR ERVL 1 484 -11 224 271 94 0 chr1 167087027 167087112 -115106552 + MIR3 SINE MIR 68 160 -48 26 50 0 0 chr1 167087213 167087253 -115106411 + AT_rich Low_complexity Low_complexity 1 40 0 2192 187 43 71 chr1 167087253 167087972 -115105692 - L1MA9 LINE L1 -25 6275 5635 196 323 0 0 chr1 167088213 167088278 -115105386 + MIR3 SINE MIR 142 206 -2 961 138 0 0 chr1 167088498 167088628 -115105036 + FLAM_C SINE Alu 1 130 -13 294 355 93 36 chr1 167089220 167089468 -115104196 - L2 LINE L2 -5 3267 3006 22 0 0 0 chr1 167089643 167089665 -115103999 + AT_rich Low_complexity Low_complexity 1 22 0 223 191 0 0 chr1 167090506 167090548 -115103116 - L2 LINE L2 -8 3305 3264 12925 166 30 16 chr1 167091418 167094891 -115098773 - L1MA4A LINE L1 -5 6286 2795 669 110 0 0 chr1 167094892 167094983 -115098681 - AluS SINE Alu -220 92 2 741 87 0 0 chr1 167094985 167095089 -115098575 - L1P LINE L1 -734 5427 5324 184 303 56 11 chr1 167096137 167096226 -115097438 - L2 LINE L2 -1333 1981 1889 253 261 15 0 chr1 167096409 167096474 -115097190 + MIR SINE MIR 167 232 -30 599 293 81 27 chr1 167098387 167098568 -115095096 + L2 LINE L2 2955 3125 -188 1647 166 68 0 chr1 167098568 167098846 -115094818 + AluSx SINE Alu 3 299 -13 599 293 81 27 chr1 167098846 167098999 -115094665 + L2 LINE L2 3125 3307 -6 210 203 51 17 chr1 167100055 167100114 -115093550 + MIR SINE MIR 109 169 -93 219 69 0 0 chr1 167100203 167100232 -115093432 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 596 267 161 37 chr1 167100584 167100906 -115092758 + MLT1J2 LTR MaLR 65 426 -24 1367 168 153 0 chr1 167100977 167101239 -115092425 + AluJo SINE Alu 1 302 0 2401 292 43 12 chr1 167101240 167102037 -115091627 - HERVL LTR ERVL -1263 4501 3681 963 297 81 32 chr1 167102101 167102416 -115091248 + ERVL LTR ERVL 1457 1755 -3938 2162 114 10 3 chr1 167102416 167102713 -115090951 + AluSg SINE Alu 2 300 -10 963 297 81 32 chr1 167102713 167102934 -115090730 + ERVL LTR ERVL 1755 2061 -3632 914 285 59 7 chr1 167103053 167103358 -115090306 + ERVL LTR ERVL 2083 2403 -3361 361 218 11 23 chr1 167103380 167103467 -115090197 - HERVL LTR ERVL -4362 1292 1207 21 36 0 0 chr1 167103526 167103554 -115090110 + AT_rich Low_complexity Low_complexity 1 28 0 504 269 93 53 chr1 167103600 167104147 -115089517 - L1MEd LINE L1 -4881 1238 670 * 535 188 78 0 chr1 167104144 167104272 -115089392 - L1MB8 LINE L1 -1 6177 6040 2496 92 21 34 chr1 167104846 167105226 -115088438 - THE1C LTR MaLR 0 375 1 270 249 152 14 chr1 167105637 167105760 -115087904 + MIR SINE MIR 20 160 -86 276 193 57 80 chr1 167105808 167105896 -115087768 + MIR SINE MIR 18 103 -105 239 313 42 10 chr1 167105901 167105997 -115087667 + L3 LINE CR1 1333 1431 -146 511 239 116 7 chr1 167106004 167106159 -115087505 - MIR SINE MIR -4 258 87 256 342 27 32 chr1 167107744 167107931 -115085733 - LTR16C LTR ERVL 0 491 306 196 313 12 12 chr1 167108286 167108366 -115085298 + L2 LINE L2 3193 3272 0 282 257 88 29 chr1 167109462 167109505 -115084159 - L1ME4a LINE L1 -125 5996 5957 723 175 0 8 chr1 167109505 167109625 -115084039 - FLAM_A SINE Alu -10 123 5 282 257 88 29 chr1 167109625 167109717 -115083947 - L1ME4a LINE L1 -164 5957 5853 505 235 148 6 chr1 167109734 167109917 -115083747 + MIR SINE MIR 51 259 -3 441 245 14 75 chr1 167110529 167110671 -115082993 + L2 LINE L2 3168 3301 -8 234 0 0 0 chr1 167110671 167110697 -115082967 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 198 175 32 63 chr1 167113396 167113459 -115080205 - L2 LINE L2 -19 3294 3234 266 310 97 7 chr1 167114011 167114156 -115079508 - MIR3 SINE MIR -8 200 43 254 244 11 22 chr1 167114166 167114256 -115079408 + MIR SINE MIR 104 192 -70 742 230 10 39 chr1 167115178 167115382 -115078282 - MIR SINE MIR -10 252 55 1903 77 0 0 chr1 167115455 167115701 -115077963 + L1PA7 LINE L1 5909 6154 0 886 132 0 0 chr1 167115968 167116097 -115077567 + FLAM_C SINE Alu 5 133 0 321 26 0 0 chr1 167116098 167116136 -115077528 + (TA)n Simple_repeat Simple_repeat 2 39 0 1689 208 32 20 chr1 167116922 167117338 -115076326 + L1M2 LINE L1 2593 3025 -3823 7726 76 11 1 chr1 167117338 167118297 -115075367 + LTR5 LTR ERVK 1 969 0 1689 208 32 20 chr1 167118297 167118633 -115075031 + L1M2 LINE L1 3025 3355 -3493 1888 78 23 0 chr1 167118635 167118893 -115074771 - L1PA13 LINE L1 -4 6159 5896 4546 114 3 2 chr1 167118998 167119632 -115074032 - MER41B LTR ERV1 0 635 1 2951 155 117 11 chr1 167119766 167120321 -115073343 - LTR18B LTR ERVL 0 614 1 3721 137 17 4 chr1 167120602 167121135 -115072529 - HERVL18 LTR ERVL -2556 3491 2952 313 161 0 18 chr1 167121135 167121191 -115072473 - HERVL18 LTR ERVL -2963 3084 3030 * 508 270 32 24 chr1 167121173 167121299 -115072365 - HERVL18 LTR ERVL -4538 1509 1383 287 119 0 0 chr1 167121289 167121331 -115072333 - HERVL18 LTR ERVL -5089 958 917 * 950 182 17 23 chr1 167121326 167121502 -115072162 - HERVL18 LTR ERVL -5381 666 492 * 1253 217 0 0 chr1 167121496 167121726 -115071938 - HERVL18 LTR ERVL -5750 297 68 2949 152 107 12 chr1 167121739 167122300 -115071364 - LTR18B LTR ERVL 0 614 1 1303 249 40 52 chr1 167122503 167122629 -115071035 - L2 LINE L2 -2 3311 3185 4230 104 69 0 chr1 167122629 167123223 -115070441 + MER41B LTR ERV1 1 635 0 1303 249 40 52 chr1 167123223 167123245 -115070419 - L2 LINE L2 -128 3185 3164 2796 122 131 82 chr1 167123245 167123878 -115069786 + MER4A LTR ERV1 1 664 0 1303 249 40 52 chr1 167123878 167123946 -115069718 - L2 LINE L2 -149 3164 3097 2499 168 121 12 chr1 167123946 167124435 -115069229 + MLT1F LTR MaLR 1 542 0 1303 249 40 52 chr1 167124435 167124717 -115068947 - L2 LINE L2 -216 3097 2817 1735 238 69 10 chr1 167124734 167125256 -115068408 - L2 LINE L2 -1377 1937 1385 2161 75 0 0 chr1 167125940 167126218 -115067446 + L1PA5 LINE L1 5873 6150 -4 243 190 0 0 chr1 167126868 167126926 -115066738 + CT-rich Low_complexity Low_complexity 1 58 0 207 303 0 22 chr1 167127266 167127355 -115066309 - MIR SINE MIR -3 259 173 1185 145 15 35 chr1 167127387 167127587 -115066077 - AluJo SINE Alu -30 282 87 27840 76 7 13 chr1 167127591 167129010 -115064654 + L1PA6 LINE L1 359 1785 -4369 3443 190 21 77 chr1 167129010 167130035 -115063629 + LTR5 LTR ERVK 1 968 -1 27840 76 7 13 chr1 167130035 167134448 -115059216 + L1PA6 LINE L1 1785 6151 -3 2223 125 0 3 chr1 167134457 167134761 -115058903 - AluSx SINE Alu -8 304 2 276 343 49 10 chr1 167137525 167137627 -115056037 - MIR SINE MIR -66 142 37 338 198 22 44 chr1 167137704 167137795 -115055869 - LTR41 LTR ERVL -1 772 684 767 150 0 23 chr1 167137830 167137963 -115055701 + L1M4 LINE L1 5274 5403 -743 757 291 18 22 chr1 167137967 167138190 -115055474 - Charlie8 DNA MER1_type -2171 246 25 183 311 106 25 chr1 167138207 167138368 -115055296 - L2 LINE L2 -571 2743 2570 426 308 50 13 chr1 167139964 167140123 -115053541 + MIR SINE MIR 2 166 -96 1860 165 7 3 chr1 167140789 167141086 -115052578 + AluJo SINE Alu 5 302 -10 2611 65 0 0 chr1 167141096 167141402 -115052262 + AluY SINE Alu 1 306 -5 451 277 16 33 chr1 167141402 167141586 -115052078 + L1ME LINE L1 5609 5789 -332 504 276 191 9 chr1 167141772 167141982 -115051682 - LTR16A LTR ERVL 0 450 203 4809 163 47 24 chr1 167142706 167143772 -115049892 + L1MB3 LINE L1 5087 6176 -7 288 372 0 33 chr1 167143862 167143983 -115049681 + MIR SINE MIR 30 146 -62 1396 308 25 70 chr1 167144004 167144135 -115049529 + MLT1K LTR MaLR 15 150 -438 2126 104 25 0 chr1 167144135 167144414 -115049250 + AluSg SINE Alu 1 286 -24 1396 308 25 70 chr1 167144414 167144883 -115048781 + MLT1K LTR MaLR 150 588 0 212 167 0 0 chr1 167145202 167145238 -115048426 - MIR SINE MIR -10 252 217 1639 201 125 3 chr1 167145310 167145663 -115048001 + MSTD LTR MaLR 1 396 0 2413 150 50 123 chr1 167146505 167147161 -115046503 + L1MB7 LINE L1 5553 6163 -21 338 366 57 40 chr1 167147193 167147420 -115046244 + L2 LINE L2 3034 3264 -8 2219 113 3 0 chr1 167147859 167148159 -115045505 - AluSc SINE Alu -8 301 1 276 170 0 0 chr1 167148303 167148356 -115045308 + GA-rich Low_complexity Low_complexity 3 55 0 16398 181 52 34 chr1 167149539 167149899 -115043765 - L1MA8 LINE L1 0 7251 6899 1771 139 65 10 chr1 167149899 167150193 -115043471 - 7SLRNA srpRNA srpRNA 0 320 11 16398 181 52 34 chr1 167150193 167150751 -115042913 - L1MA8 LINE L1 -352 6899 6353 2199 119 3 0 chr1 167150751 167151054 -115042610 - AluSg SINE Alu -6 304 1 16398 181 52 34 chr1 167151054 167151959 -115041705 - L1MA8 LINE L1 -898 6353 5466 3027 115 4 49 chr1 167151959 167152411 -115041253 - MSTB1 LTR MaLR 0 432 1 16398 181 52 34 chr1 167152411 167153169 -115040495 - L1MA8 LINE L1 -1785 5466 4723 1939 115 0 4 chr1 167153169 167153438 -115040226 - AluSx SINE Alu -10 302 35 16398 181 52 34 chr1 167153438 167153614 -115040050 - L1MA8 LINE L1 -2528 4723 4552 1826 214 22 8 chr1 167153614 167153974 -115039690 - MLT1A1 LTR MaLR 0 365 1 16398 181 52 34 chr1 167153974 167158116 -115035548 - L1MA8 LINE L1 -2699 4552 448 5155 122 244 102 chr1 167158120 167159605 -115034059 + pTR5 LTR ERV1 743 2438 0 2040 173 11 6 chr1 167159613 167159971 -115033693 - L1MA8 LINE L1 -6667 363 4 2587 59 0 3 chr1 167160036 167160343 -115033321 - AluY SINE Alu -5 306 1 25 31 0 0 chr1 167160365 167160397 -115033267 + AT_rich Low_complexity Low_complexity 1 32 0 1996 168 99 8 chr1 167160539 167160902 -115032762 + MSTD LTR MaLR 1 396 0 1488 223 13 79 chr1 167161009 167161066 -115032598 + MLT1A1 LTR MaLR 1 60 -305 5107 46 5 5 chr1 167161066 167161657 -115032007 + LTR10C LTR ERV1 1 591 0 1488 223 13 79 chr1 167161657 167161990 -115031674 + MLT1A1 LTR MaLR 60 365 0 332 338 28 28 chr1 167162659 167162804 -115030860 + MLT1K LTR MaLR 5 149 -439 526 210 28 56 chr1 167163037 167163180 -115030484 + MLT1K LTR MaLR 448 586 -2 476 290 101 55 chr1 167163368 167163606 -115030058 + MIR SINE MIR 14 262 0 2450 137 71 17 chr1 167163895 167164305 -115029359 - MSTB1 LTR MaLR 0 432 1 404 337 65 0 chr1 167164369 167164538 -115029126 + MER5A DNA MER1_type 4 183 -6 651 307 130 51 chr1 167164545 167165444 -115028220 + L2 LINE L2 1236 2205 -1109 199 259 69 0 chr1 167165444 167165502 -115028162 + L2 LINE L2 2609 2670 -644 325 280 0 0 chr1 167165762 167165837 -115027827 - L2 LINE L2 -5 3308 3234 222 37 0 0 chr1 167166063 167166090 -115027574 + (TC)n Simple_repeat Simple_repeat 2 28 0 2354 97 3 0 chr1 167166090 167166390 -115027274 - AluSx SINE Alu -11 301 1 914 92 133 96 chr1 167166623 167166841 -115026823 - THE1C LTR MaLR 0 375 150 238 175 0 0 chr1 167166852 167166892 -115026772 - MSTC LTR MaLR -212 216 177 * 430 200 168 52 chr1 167166862 167166932 -115026732 - MLT1B LTR MaLR -217 173 113 3936 140 22 22 chr1 167166932 167167567 -115026097 - MER41B LTR ERV1 0 635 1 430 200 168 52 chr1 167167567 167167651 -115026013 - MLT1B LTR MaLR -277 113 1 2359 54 0 54 chr1 167168019 167168334 -115025330 - AluY SINE Alu -8 303 6 276 212 45 0 chr1 167169909 167169975 -115023689 - MER5A DNA MER1_type -77 112 44 180 0 0 0 chr1 167171022 167171042 -115022622 + (TA)n Simple_repeat Simple_repeat 2 21 0 2241 100 7 3 chr1 167171458 167171748 -115021916 - AluSc SINE Alu -18 291 1 2338 97 0 0 chr1 167171943 167172242 -115021422 + AluSg SINE Alu 1 299 -11 579 191 9 0 chr1 167172669 167172774 -115020890 - MER5B DNA MER1_type 0 178 73 236 351 53 53 chr1 167172823 167172954 -115020710 - MER5B DNA MER1_type -36 142 12 204 308 144 27 chr1 167173772 167173918 -115019746 - L2 LINE L2 -34 3238 3076 275 344 177 29 chr1 167174812 167175190 -115018474 - L2 LINE L2 -28 3244 2811 932 133 0 30 chr1 167175798 167175933 -115017731 - FLAM_C SINE Alu -2 131 1 1121 152 0 34 chr1 167176030 167176234 -115017430 - L1MA7 LINE L1 -171 6120 5924 9669 108 33 4 chr1 167176236 167177646 -115016018 - Tigger1 DNA MER2_type 0 2418 969 3064 132 11 0 chr1 167177643 167178090 -115015574 - Tigger1 DNA MER2_type -1744 674 223 * 1094 182 8 64 chr1 167178091 167178327 -115015337 + AluJb SINE Alu 75 297 -15 1193 157 15 0 chr1 167178327 167178525 -115015139 - Tigger1 DNA MER2_type -2192 226 26 678 111 52 52 chr1 167178537 167178709 -115014955 + L1MA7 LINE L1 6120 6291 0 2254 92 7 0 chr1 167181745 167182048 -115011616 + AluSg SINE Alu 1 305 -5 1044 264 28 12 chr1 167182347 167182369 -115011295 - MIR SINE MIR -8 254 234 1155 199 98 43 chr1 167182369 167182695 -115010969 + MER2 DNA MER2_type 1 344 0 1044 264 28 12 chr1 167182695 167182922 -115010742 - MIR SINE MIR -28 234 1 301 283 138 20 chr1 167183136 167183288 -115010376 - MIR3 SINE MIR -26 182 13 462 258 81 0 chr1 167184924 167185048 -115008616 + MIR SINE MIR 58 191 -71 266 266 55 37 chr1 167185335 167185444 -115008220 - L2 LINE L2 -750 2564 2454 309 273 53 13 chr1 167185569 167185719 -115007945 - MER103 DNA DNA -8 158 3 2028 131 0 0 chr1 167186037 167186328 -115007336 + AluSg SINE Alu 1 291 -19 2308 68 0 3 chr1 167186339 167186634 -115007030 + AluY SINE Alu 1 294 -17 2413 62 0 3 chr1 167186645 167186953 -115006711 + AluY SINE Alu 1 307 -4 405 326 37 12 chr1 167187678 167187851 -115005813 - MIR SINE MIR -59 149 7 802 219 65 0 chr1 167188281 167188450 -115005214 - MER58A DNA MER1_type -35 189 10 246 226 0 48 chr1 167188701 167188763 -115004901 + MLT1L LTR MaLR 143 201 -414 242 276 17 0 chr1 167188931 167188989 -115004675 + MLT1L LTR MaLR 354 412 -203 2102 110 3 0 chr1 167190034 167190325 -115003339 + AluSc SINE Alu 1 292 -17 356 234 241 21 chr1 167190424 167190569 -115003095 + MER5A DNA MER1_type 13 189 0 189 255 51 51 chr1 167192872 167192970 -115000694 - L2 LINE L2 -213 3059 2962 514 268 160 56 chr1 167193319 167193606 -115000058 + L2 LINE L2 2211 2527 -787 1853 245 188 31 chr1 167193611 167194386 -114999278 + L2 LINE L2 1302 2198 -1116 1020 46 0 99 chr1 167194388 167194539 -114999125 + AluSq/x SINE Alu 1 136 -177 48 0 0 0 chr1 167194539 167194587 -114999077 + AT_rich Low_complexity Low_complexity 1 48 0 232 39 0 0 chr1 167194601 167194627 -114999037 + Alu SINE Alu 157 182 -118 1025 115 0 0 chr1 167194652 167194800 -114998864 + AluSp/q SINE Alu 154 301 -12 2064 244 73 55 chr1 167194806 167195466 -114998198 + L2 LINE L2 2203 2880 -433 1655 156 3 26 chr1 167195466 167195653 -114998011 - L1MA7 LINE L1 -1 6290 6111 917 254 61 55 chr1 167195653 167196015 -114997649 + MLT1A1 LTR MaLR 2 365 0 1655 156 3 26 chr1 167196015 167196135 -114997529 - L1MA7 LINE L1 -180 6111 5990 2064 244 73 55 chr1 167196135 167196321 -114997343 + L2 LINE L2 2880 3061 -252 432 117 0 0 chr1 167196355 167196414 -114997250 + MLT1B LTR MaLR 1 59 -331 1048 206 20 15 chr1 167196414 167196618 -114997046 + MER6B DNA MER2_type 1 205 -5 * 1839 117 127 3 chr1 167196606 167196922 -114996742 + MLT1B LTR MaLR 36 390 0 558 241 96 30 chr1 167196951 167197117 -114996547 + L2 LINE L2 3131 3307 -6 303 326 22 0 chr1 167197440 167197529 -114996135 + L2 LINE L2 3182 3272 0 340 278 113 20 chr1 167197643 167197794 -114995870 + MIR SINE MIR 48 212 -50 517 275 9 8 chr1 167197951 167198095 -114995569 + MIR SINE MIR 41 184 -57 552 275 30 55 chr1 167199076 167199276 -114994388 + MIR SINE MIR 18 212 -50 290 318 66 40 chr1 167199480 167199678 -114993986 + MIR SINE MIR 20 222 -40 216 213 43 0 chr1 167200538 167200585 -114993079 - MIR SINE MIR -79 129 81 1749 179 0 0 chr1 167200633 167200930 -114992734 + AluJb SINE Alu 11 307 -5 354 308 84 21 chr1 167200988 167201131 -114992533 + L3 LINE CR1 403 554 -1023 238 290 19 20 chr1 167201135 167201279 -114992385 + L2 LINE L2 2791 3037 -276 824 256 124 4 chr1 167201339 167201573 -114992091 + MIR SINE MIR 1 262 0 345 185 68 142 chr1 167201568 167201730 -114991934 + L2 LINE L2 3160 3309 -4 * 488 297 245 63 chr1 167201775 167202519 -114991145 + L3 LINE CR1 588 1466 -111 227 324 105 30 chr1 167203426 167203787 -114989877 + L2 LINE L2 1618 2005 -1309 262 264 22 55 chr1 167203836 167203927 -114989737 + MIR3 SINE MIR 99 186 -22 233 303 189 19 chr1 167203905 167204169 -114989495 + L2 LINE L2 2035 2343 -971 * 250 336 121 40 chr1 167204638 167204787 -114988877 + L3 LINE CR1 157 317 -1260 234 357 7 49 chr1 167204899 167205042 -114988622 + L2 LINE L2 3083 3219 -53 248 297 79 30 chr1 167205089 167205190 -114988474 + L3 LINE CR1 484 589 -988 1633 185 81 9 chr1 167205199 167205741 -114987923 + L1M3 LINE L1 5025 5600 -571 850 117 25 43 chr1 167205743 167205905 -114987759 + L1MB3 LINE L1 5993 6151 -32 1616 124 16 32 chr1 167206084 167206399 -114987265 - AluY SINE Alu -1 310 1 222 233 0 33 chr1 167209769 167209829 -114983835 + G-rich Low_complexity Low_complexity 1 58 0 213 39 0 0 chr1 167209875 167209901 -114983763 + (CCG)n Simple_repeat Simple_repeat 1 26 0 2179 105 0 3 chr1 167211573 167211886 -114981778 - AluSx SINE Alu 0 312 1 2150 84 3 17 chr1 167211896 167212194 -114981470 - AluSg SINE Alu -16 294 1 236 322 200 9 chr1 167212558 167212673 -114980991 + MIR SINE MIR 7 143 -119 2111 95 0 41 chr1 167213178 167213494 -114980170 - AluSg SINE Alu -7 303 1 1583 196 107 27 chr1 167213500 167213950 -114979714 - Charlie4a DNA MER1_type -3 505 20 195 247 104 39 chr1 167215850 167215927 -114977737 + L2 LINE L2 3212 3293 -20 2083 138 38 35 chr1 167216626 167217023 -114976641 - L1MA8 LINE L1 -243 6048 5651 502 345 7 7 chr1 167217028 167217173 -114976491 - L2 LINE L2 -11 3261 3117 1360 301 169 31 chr1 167217365 167218430 -114975234 - L2 LINE L2 -834 2480 1269 860 250 58 33 chr1 167218531 167218771 -114974893 + MIR SINE MIR 11 256 -6 301 299 41 10 chr1 167221839 167221936 -114971728 - MIR3 SINE MIR -30 178 79 195 365 71 81 chr1 167223663 167223973 -114969691 - L2 LINE L2 -30 3242 2936 2013 116 3 7 chr1 167224527 167224830 -114968834 - AluSx SINE Alu -10 302 1 332 274 211 17 chr1 167224932 167225107 -114968557 - L1ME4a LINE L1 -44 6077 5869 2261 70 0 20 chr1 167226175 167226475 -114967189 + AluY SINE Alu 1 294 -17 211 277 73 73 chr1 167226512 167226649 -114967015 - L2 LINE L2 -4 3309 3173 28 29 0 0 chr1 167234846 167234881 -114958783 + AT_rich Low_complexity Low_complexity 1 35 0 182 266 78 0 chr1 167236871 167236935 -114956729 - MIR SINE MIR -91 171 103 578 183 176 0 chr1 167238036 167238167 -114955497 + MER45A DNA AcHobo 20 173 -5 313 202 45 56 chr1 167238380 167238469 -114955195 - L2 LINE L2 0 3313 3226 2683 33 0 0 chr1 167238710 167239009 -114954655 + AluY SINE Alu 1 299 -12 208 293 0 0 chr1 167240558 167240616 -114953048 + (CATA)n Simple_repeat Simple_repeat 2 59 0 897 328 126 28 chr1 167240854 167241221 -114952443 + L2 LINE L2 2317 2646 -667 2280 98 0 3 chr1 167241221 167241526 -114952138 + AluSc SINE Alu 1 304 -5 897 328 126 28 chr1 167241526 167241879 -114951785 + L2 LINE L2 2646 2963 -350 252 0 0 0 chr1 167241879 167241907 -114951757 + (CA)n Simple_repeat Simple_repeat 2 29 0 897 328 126 28 chr1 167241907 167242078 -114951586 + L2 LINE L2 2963 3311 -2 1074 325 106 18 chr1 167242722 167243437 -114950227 - L3 LINE CR1 -88 1489 712 527 268 22 38 chr1 167244107 167244290 -114949374 + MIR SINE MIR 66 245 -17 276 245 143 0 chr1 167244340 167244438 -114949226 - MIR SINE MIR -28 234 123 569 260 98 44 chr1 167244448 167244652 -114949012 - MIR SINE MIR -17 245 31 1494 237 75 27 chr1 167244839 167245214 -114948450 + MSTD LTR MaLR 1 393 -3 388 310 23 117 chr1 167245282 167245582 -114948082 - L2 LINE L2 -8 3264 2993 2247 103 10 3 chr1 167245676 167245986 -114947678 + AluSp SINE Alu 1 312 -1 319 301 98 79 chr1 167246683 167246949 -114946715 + L2 LINE L2 2993 3263 -9 23 33 0 0 chr1 167247742 167247772 -114945892 + AT_rich Low_complexity Low_complexity 1 30 0 523 366 6 0 chr1 167248000 167248172 -114945492 + MIR SINE MIR 25 197 -65 490 286 95 7 chr1 167248438 167248585 -114945079 - MIR SINE MIR -70 192 33 1917 121 0 28 chr1 167249453 167249776 -114943888 - AluSg SINE Alu 0 315 1 1953 156 17 3 chr1 167249798 167250100 -114943564 - AluJb SINE Alu -6 306 1 202 360 130 0 chr1 167250194 167250294 -114943370 + L2 LINE L2 3139 3251 -21 206 238 0 24 chr1 167251241 167251283 -114942381 - L2 LINE L2 -16 3256 3216 455 201 164 31 chr1 167251301 167251460 -114942204 - MER104 DNA Tc2 0 180 1 573 237 79 40 chr1 167251464 167251641 -114942023 - MIR SINE MIR -71 191 8 631 302 124 81 chr1 167251934 167252761 -114940903 - L3 LINE CR1 -248 1329 467 249 387 58 7 chr1 167252764 167252919 -114940745 - MIR SINE MIR -54 208 46 2150 89 0 54 chr1 167253662 167253977 -114939687 + AluSq SINE Alu 1 298 -15 798 154 0 59 chr1 167253981 167254117 -114939547 + FLAM_C SINE Alu 2 129 -14 21 36 0 0 chr1 167254120 167254148 -114939516 + AT_rich Low_complexity Low_complexity 1 28 0 406 337 79 72 chr1 167254948 167255402 -114938262 - L2 LINE L2 0 3272 2801 2276 77 3 3 chr1 167255402 167255710 -114937954 + AluSp SINE Alu 1 308 0 406 337 79 72 chr1 167255710 167256037 -114937627 - L2 LINE L2 -471 2801 2478 1600 249 76 18 chr1 167256147 167256739 -114936925 + L2 LINE L2 2690 3313 0 294 287 120 0 chr1 167257014 167257122 -114936542 + MARNA DNA Mariner 72 192 -394 262 261 0 14 chr1 167257062 167257131 -114936533 - MARNA DNA Mariner -134 452 385 * 454 324 124 4 chr1 167257146 167257371 -114936293 - MIR SINE MIR -2 260 9 240 253 253 0 chr1 167257463 167257562 -114936102 + MIR SINE MIR 56 179 -83 352 235 83 38 chr1 167257836 167257968 -114935696 + MIR SINE MIR 51 188 -74 1270 157 34 10 chr1 167258218 167258422 -114935242 - MER3 DNA MER1_type 0 209 1 381 359 0 0 chr1 167258536 167258664 -114935000 - MIR3 SINE MIR -10 198 71 565 187 60 108 chr1 167259697 167259828 -114933836 - MER69A DNA AcHobo -2349 177 54 2441 59 0 7 chr1 167259828 167260135 -114933529 + AluY SINE Alu 1 305 -6 565 187 60 108 chr1 167260135 167260169 -114933495 - MER69A DNA AcHobo -2472 54 20 195 338 97 69 chr1 167262235 167262584 -114931080 - L2 LINE L2 0 3272 2914 1885 122 3 78 chr1 167262721 167263040 -114930624 + AluSx SINE Alu 18 312 0 650 314 125 92 chr1 167263062 167263852 -114929812 - L2 LINE L2 -649 2665 1850 2485 84 3 0 chr1 167263987 167264298 -114929366 - AluSp SINE Alu -1 312 1 227 116 0 0 chr1 167264321 167264364 -114929300 - Alu SINE Alu -1 302 260 200 230 150 70 chr1 167264541 167264641 -114929023 - MIR SINE MIR -39 223 116 321 253 7 130 chr1 167265255 167265329 -114928335 - L2 LINE L2 0 3313 3264 2300 58 0 48 chr1 167265329 167265639 -114928025 + AluY SINE Alu 17 311 0 321 253 7 130 chr1 167265639 167265710 -114927954 - L2 LINE L2 -49 3264 3186 2142 133 0 0 chr1 167265945 167266246 -114927418 - AluSx SINE Alu -11 301 1 2179 108 0 7 chr1 167266536 167266833 -114926831 + AluSq SINE Alu 1 295 -18 440 297 135 48 chr1 167266912 167267141 -114926523 + MIR SINE MIR 11 259 -3 369 254 45 45 chr1 167267143 167267253 -114926411 - MIR3 SINE MIR -91 117 8 468 254 67 0 chr1 167267356 167267490 -114926174 - MIR SINE MIR -15 247 105 521 245 50 7 chr1 167268421 167268560 -114925104 - MIR SINE MIR 0 262 118 317 366 122 32 chr1 167268572 167268818 -114924846 + L2 LINE L2 2979 3246 -26 21 82 0 0 chr1 167269546 167269595 -114924069 + AT_rich Low_complexity Low_complexity 1 49 0 217 350 40 0 chr1 167271066 167271166 -114922498 + MIR3 SINE MIR 105 208 0 387 0 0 0 chr1 167271203 167271246 -114922418 + (TG)n Simple_repeat Simple_repeat 2 44 0 1727 131 156 10 chr1 167271650 167271964 -114921700 + MER46B DNA MER2_type 1 235 -1 324 325 10 108 chr1 167272194 167272231 -114921433 + MIR3 SINE MIR 19 58 -150 2409 103 0 0 chr1 167272231 167272542 -114921122 - AluSx SINE Alu -1 311 1 324 325 10 108 chr1 167272542 167272707 -114920957 + MIR3 SINE MIR 58 201 -7 203 0 37 0 chr1 167273628 167273655 -114920009 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 709 212 17 0 chr1 167273655 167273773 -114919891 - FLAM_C SINE Alu -21 122 3 189 297 0 27 chr1 167275091 167275165 -114918499 + L2 LINE L2 2634 2705 -609 181 258 202 11 chr1 167275534 167275623 -114918041 - L2 LINE L2 0 3313 3208 358 306 133 92 chr1 167275650 167275987 -114917677 - L2 LINE L2 -2 3270 2920 184 268 0 0 chr1 167276190 167276231 -114917433 + L2 LINE L2 3201 3241 -31 205 161 0 0 chr1 167276250 167276281 -114917383 + (ATG)n Simple_repeat Simple_repeat 2 32 0 701 258 60 37 chr1 167276373 167276590 -114917074 + MIR SINE MIR 41 262 0 234 342 54 27 chr1 167277318 167277429 -114916235 - L2 LINE L2 -21 3292 3179 538 274 42 57 chr1 167277748 167277960 -114915704 - MIR SINE MIR -14 248 40 441 240 97 51 chr1 167278159 167278334 -114915330 - MIR SINE MIR -78 184 2 621 250 54 69 chr1 167278529 167278790 -114914874 - MIR SINE MIR -8 254 8 779 169 0 22 chr1 167279123 167279259 -114914405 + FLAM_C SINE Alu 1 133 0 3769 192 32 16 chr1 167279272 167280013 -114913651 + L1MB7 LINE L1 5432 6184 0 1172 191 50 6 chr1 167281089 167281500 -114912164 + Charlie4a DNA MER1_type 48 508 0 306 0 0 0 chr1 167281536 167281570 -114912094 + (CA)n Simple_repeat Simple_repeat 1 34 0 257 271 103 19 chr1 167281743 167281850 -114911814 - L2 LINE L2 -8 3305 3190 207 69 0 0 chr1 167282286 167282315 -114911349 + (GA)n Simple_repeat Simple_repeat 2 30 0 379 273 86 27 chr1 167282474 167282661 -114911003 - L2 LINE L2 -197 3075 2878 229 366 57 5 chr1 167282960 167283154 -114910510 - L2 LINE L2 -661 2653 2450 211 303 7 76 chr1 167283425 167283570 -114910094 + MIR SINE MIR 84 218 -44 2292 102 3 0 chr1 167284983 167285277 -114908387 + AluSp SINE Alu 1 295 -18 322 102 0 20 chr1 167285359 167285408 -114908256 - Alu SINE Alu -6 294 247 2052 121 7 0 chr1 167285821 167286131 -114907533 + AluSx SINE Alu 1 312 0 960 307 96 47 chr1 167286269 167286868 -114906796 - L2 LINE L2 -56 3257 2586 2479 88 0 0 chr1 167286868 167287176 -114906488 + AluSg SINE Alu 1 308 -2 960 307 96 47 chr1 167287176 167287584 -114906080 - L2 LINE L2 -727 2586 2199 259 306 49 25 chr1 167288359 167288488 -114905176 - MIR3 SINE MIR -51 157 25 353 286 21 36 chr1 167289158 167289298 -114904366 - MIR3 SINE MIR -37 171 34 297 0 0 0 chr1 167289529 167289562 -114904102 + (CA)n Simple_repeat Simple_repeat 2 34 0 772 226 54 6 chr1 167290182 167290350 -114903314 + MER5B DNA MER1_type 3 178 0 356 294 56 12 chr1 167290469 167290629 -114903035 - MIR SINE MIR -82 180 14 367 224 98 42 chr1 167291434 167291577 -114902087 - MIR3 SINE MIR -38 170 20 439 238 131 21 chr1 167291967 167292159 -114901505 - MIR SINE MIR -5 257 45 762 239 157 13 chr1 167293142 167293460 -114900204 + L1M4 LINE L1 3872 4235 -1911 248 310 0 18 chr1 167293872 167293985 -114899679 - L1MC4 LINE L1 -1318 6724 6614 195 280 0 67 chr1 167294094 167294169 -114899495 - L2 LINE L2 0 3313 3244 490 210 56 7 chr1 167294951 167294965 -114898699 - MIR SINE MIR 0 262 250 1949 151 38 30 chr1 167294965 167295337 -114898327 - THE1C LTR MaLR 0 375 1 490 210 56 7 chr1 167295337 167295465 -114898199 - MIR SINE MIR -12 250 113 722 266 93 8 chr1 167296013 167296250 -114897414 + MIR SINE MIR 6 262 0 2227 118 0 0 chr1 167296500 167296797 -114896867 + AluSc SINE Alu 1 297 -12 195 271 17 0 chr1 167296811 167296870 -114896794 + L3b LINE CR1 1295 1354 -229 2324 70 43 3 chr1 167297088 167297387 -114896277 - AluY SINE Alu 0 311 1 397 328 38 27 chr1 167298570 167298756 -114894908 - MIR SINE MIR -2 260 73 225 0 0 0 chr1 167298963 167298988 -114894676 + (CA)n Simple_repeat Simple_repeat 1 25 0 213 284 54 14 chr1 167299345 167299419 -114894245 + L2 LINE L2 3227 3303 -10 187 317 30 79 chr1 167299634 167299735 -114893929 + MIR SINE MIR 20 115 -147 252 274 48 27 chr1 167299740 167299886 -114893778 + L2 LINE L2 1823 1971 -1343 851 141 0 8 chr1 167299902 167300030 -114893634 - FLAM_C SINE Alu -16 127 1 326 296 184 0 chr1 167300159 167300311 -114893353 - MIR SINE MIR -6 256 77 526 321 87 12 chr1 167300338 167300659 -114893005 + L2 LINE L2 2069 2413 -901 334 256 49 0 chr1 167301138 167301220 -114892444 + L2 LINE L2 3228 3313 0 500 250 21 7 chr1 167303106 167303246 -114890418 - MIR3 SINE MIR -2 206 65 2477 75 0 0 chr1 167303655 167303950 -114889714 + AluY SINE Alu 1 295 -16 210 222 19 0 chr1 167304624 167304678 -114888986 - MIR3 SINE MIR -2 206 152 289 250 0 0 chr1 167306017 167306085 -114887579 - MIR SINE MIR -10 252 185 2395 91 0 3 chr1 167306392 167306701 -114886963 - AluSq SINE Alu -5 308 1 1063 169 65 68 chr1 167307613 167307938 -114885726 + MER5C DNA MER1_type 1 324 0 415 212 144 23 chr1 167307983 167308115 -114885549 - MER112 DNA MER1_type -25 235 88 1448 162 85 56 chr1 167308238 167308651 -114885013 + LTR37A LTR ERV1 1 425 -1 381 296 8 48 chr1 167309006 167309131 -114884533 + MIR SINE MIR 19 138 -70 229 304 89 9 chr1 167309604 167309716 -114883948 + L2 LINE L2 3111 3231 -41 350 252 104 60 chr1 167309770 167310020 -114883644 + L2 LINE L2 2241 2501 -813 532 194 155 0 chr1 167310059 167310162 -114883502 - FLAM_A SINE Alu -10 123 5 307 324 143 0 chr1 167310271 167310453 -114883211 - MIR SINE MIR -50 212 5 4434 107 13 33 chr1 167310565 167311266 -114882398 - LTR12 LTR ERV1 0 688 2 311 356 84 47 chr1 167311367 167311726 -114881938 + L2 LINE L2 2831 3202 -70 948 171 123 115 chr1 167311731 167312105 -114881559 - LTR16A1 LTR ERVL 0 457 81 2473 63 7 7 chr1 167312588 167312889 -114880775 - AluY SINE Alu -10 301 1 2395 88 7 0 chr1 167312891 167313199 -114880465 - AluSp SINE Alu -3 310 1 413 244 0 0 chr1 167313670 167313756 -114879908 - MIR SINE MIR -130 132 47 340 331 42 57 chr1 167315033 167315365 -114878299 + LTR16C LTR ERVL 116 442 -49 766 158 43 103 chr1 167316029 167316213 -114877451 + FRAM SINE Alu 1 173 -3 257 271 252 0 chr1 167316902 167317009 -114876655 + L2 LINE L2 3180 3313 0 588 220 11 68 chr1 167317053 167317230 -114876434 + MIR SINE MIR 7 173 -89 227 241 0 19 chr1 167317273 167317327 -114876337 + MIR SINE MIR 175 227 -35 333 47 0 0 chr1 167317433 167317476 -114876188 + (TC)n Simple_repeat Simple_repeat 2 44 0 2098 110 0 21 chr1 167317476 167317766 -114875898 - AluSx SINE Alu -28 284 1 190 276 0 0 chr1 167317816 167317874 -114875790 + MIR SINE MIR 205 262 0 180 382 40 7 chr1 167318666 167318818 -114874846 - L2 LINE L2 -212 3060 2904 265 280 76 32 chr1 167319135 167319292 -114874372 - L2 LINE L2 -457 2857 2694 183 250 0 36 chr1 167320531 167320587 -114873077 - L2 LINE L2 -649 2665 2612 302 312 77 8 chr1 167320633 167320775 -114872889 - MIR SINE MIR -62 146 43 294 270 46 87 chr1 167321742 167321938 -114871726 + MER5A DNA MER1_type 1 188 -1 2181 119 0 7 chr1 167322345 167322647 -114871017 + AluSg SINE Alu 1 300 -10 206 320 50 0 chr1 167322753 167322853 -114870811 - L2 LINE L2 -1743 1571 1467 195 233 133 0 chr1 167322851 167322911 -114870753 + MIR3 SINE MIR 138 205 -3 * 611 288 93 9 chr1 167323737 167323963 -114869701 + MIR SINE MIR 18 262 0 26 0 0 0 chr1 167323963 167323989 -114869675 + AT_rich Low_complexity Low_complexity 1 26 0 2451 109 0 0 chr1 167324023 167324335 -114869329 + AluSx SINE Alu 1 312 0 2606 56 3 0 chr1 167324471 167324776 -114868888 - AluSp SINE Alu -6 307 2 2385 88 0 3 chr1 167324920 167325217 -114868447 - AluSq SINE Alu -17 296 1 1644 177 25 37 chr1 167325218 167325375 -114868289 - MER58B DNA MER1_type -2083 337 180 1847 166 24 0 chr1 167325375 167325664 -114868000 - AluJo SINE Alu -16 296 1 1644 177 25 37 chr1 167325664 167325833 -114867831 - MER58B DNA MER1_type -2240 180 15 206 311 67 22 chr1 167326062 167326152 -114867512 + L2 LINE L2 3180 3273 -40 354 23 0 0 chr1 167326323 167326366 -114867298 + (TC)n Simple_repeat Simple_repeat 2 44 0 2080 128 7 0 chr1 167326508 167326804 -114866860 + AluSx SINE Alu 1 298 -14 288 286 45 38 chr1 167327007 167327140 -114866524 + L2 LINE L2 3179 3312 -1 842 150 0 0 chr1 167329025 167329158 -114864506 - FLAM_C SINE Alu 0 133 1 244 295 76 19 chr1 167329341 167329446 -114864218 + MIR SINE MIR 1 111 -151 883 250 32 24 chr1 167329472 167329720 -114863944 - MIR SINE MIR -1 261 12 346 190 101 13 chr1 167329734 167329813 -114863851 + MIR SINE MIR 148 233 -29 234 318 68 0 chr1 167329907 167329995 -114863669 - MIR SINE MIR -79 129 36 23 0 0 0 chr1 167330782 167330805 -114862859 + AT_rich Low_complexity Low_complexity 1 23 0 2493 80 0 3 chr1 167331022 167331334 -114862330 - AluY SINE Alu 0 311 1 228 299 69 0 chr1 167331371 167331458 -114862206 - MIR3 SINE MIR -6 202 110 484 302 29 12 chr1 167331917 167332089 -114861575 + MIR SINE MIR 2 176 -86 26 0 0 0 chr1 167332168 167332194 -114861470 + AT_rich Low_complexity Low_complexity 1 26 0 550 256 12 36 chr1 167332506 167332674 -114860990 + MIR SINE MIR 4 167 -95 23 0 0 0 chr1 167332726 167332749 -114860915 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr1 167333354 167333394 -114860270 + (TC)n Simple_repeat Simple_repeat 1 40 0 30 0 0 0 chr1 167333653 167333683 -114859981 + AT_rich Low_complexity Low_complexity 1 30 0 444 19 0 0 chr1 167334199 167334252 -114859412 + (GA)n Simple_repeat Simple_repeat 1 53 0 387 0 0 0 chr1 167334251 167334294 -114859370 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 276 275 0 25 chr1 167334359 167334439 -114859225 + GA-rich Low_complexity Low_complexity 5 82 0 314 279 18 18 chr1 167334959 167335070 -114858594 + GA-rich Low_complexity Low_complexity 1 111 0 192 194 0 0 chr1 167335442 167335478 -114858186 + MIR SINE MIR 112 147 -61 237 275 110 11 chr1 167336721 167336812 -114856852 - MIR3 SINE MIR -3 205 106 403 244 56 56 chr1 167337093 167337273 -114856391 - L2 LINE L2 0 3313 3134 236 284 149 50 chr1 167338861 167339002 -114854662 - MIR SINE MIR -46 216 62 2311 67 17 7 chr1 167339126 167339423 -114854241 + AluY SINE Alu 1 300 -11 394 248 177 21 chr1 167339549 167339690 -114853974 + MIR3 SINE MIR 46 208 0 229 190 35 17 chr1 167340241 167340299 -114853365 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 538 335 78 30 chr1 167341427 167341758 -114851906 + L2 LINE L2 2925 3271 -1 25 0 0 0 chr1 167341779 167341804 -114851860 + AT_rich Low_complexity Low_complexity 1 25 0 350 130 203 0 chr1 167341810 167341879 -114851785 + FLAM_A SINE Alu 42 124 -9 2239 135 0 0 chr1 167342039 167342351 -114851313 - AluSx SINE Alu 0 312 1 544 285 20 35 chr1 167343832 167344032 -114849632 + MIR SINE MIR 66 262 0 285 245 143 0 chr1 167344065 167344163 -114849501 - MIR SINE MIR -28 234 123 570 260 98 44 chr1 167344173 167344377 -114849287 - MIR SINE MIR -17 245 31 559 283 42 19 chr1 167344564 167344859 -114848805 + MSTC LTR MaLR 1 306 -90 339 252 170 14 chr1 167346301 167346448 -114847216 - MIR SINE MIR -2 260 91 490 277 13 76 chr1 167346566 167346790 -114846874 + MIR SINE MIR 49 258 -4 848 200 97 41 chr1 167347432 167347772 -114845892 - L1ME4a LINE L1 -3 6118 5760 24 32 0 0 chr1 167347897 167347928 -114845736 + AT_rich Low_complexity Low_complexity 1 31 0 322 261 12 73 chr1 167347956 167348021 -114845643 - L1ME4a LINE L1 -507 5614 5547 1890 181 9 0 chr1 167348021 167348359 -114845305 + MER58B DNA MER1_type 1 341 0 322 261 12 73 chr1 167348359 167348458 -114845206 - L1ME4a LINE L1 -574 5547 5460 195 268 0 0 chr1 167348464 167348505 -114845159 - L2 LINE L2 -10 3262 3222 210 37 0 0 chr1 167348752 167348779 -114844885 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2136 128 0 0 chr1 167348783 167349072 -114844592 - AluSx SINE Alu -23 289 1 1507 177 25 37 chr1 167349073 167349230 -114844434 - MER58B DNA MER1_type -2083 337 180 1858 167 24 0 chr1 167349230 167349518 -114844146 - AluJo SINE Alu -17 295 1 1507 177 25 37 chr1 167349518 167349687 -114843977 - MER58B DNA MER1_type -2240 180 15 237 311 67 22 chr1 167349916 167350006 -114843658 + L2 LINE L2 3180 3273 -40 195 125 0 0 chr1 167350176 167350216 -114843448 + (TC)n Simple_repeat Simple_repeat 1 40 0 343 298 97 8 chr1 167350501 167350625 -114843039 + L2 LINE L2 3136 3270 -2 22 56 0 0 chr1 167351647 167351683 -114841981 + AT_rich Low_complexity Low_complexity 1 36 0 2213 96 13 7 chr1 167351905 167352208 -114841456 + AluSg SINE Alu 1 305 -5 27 81 0 0 chr1 167352304 167352366 -114841298 + AT_rich Low_complexity Low_complexity 1 62 0 513 305 129 9 chr1 167353350 167353583 -114840081 + L3 LINE CR1 1282 1542 -35 341 210 145 58 chr1 167353658 167353796 -114839868 - MIR SINE MIR -1 261 112 * 1080 234 161 15 chr1 167353771 167354169 -114839495 + L2 LINE L2 1163 1618 -1696 14654 172 88 14 chr1 167354270 167360018 -114833646 - L1PA12 LINE L1 -1412 6172 1 1129 235 9 3 chr1 167360021 167360336 -114833328 - L1ME4a LINE L1 -777 5369 5053 466 147 0 0 chr1 167360344 167360419 -114833245 + L1PA12 LINE L1 329 403 -7178 343 171 0 11 chr1 167360467 167360555 -114833109 - L1ME4a LINE L1 -1086 5060 4974 1426 190 40 0 chr1 167361514 167361767 -114831897 + AluJb SINE Alu 24 286 -26 312 333 81 0 chr1 167361943 167362054 -114831610 + L2 LINE L2 3153 3272 0 21 36 0 0 chr1 167362711 167362739 -114830925 + AT_rich Low_complexity Low_complexity 1 28 0 205 179 0 0 chr1 167362891 167362930 -114830734 + A-rich Low_complexity Low_complexity 2 40 0 13914 134 36 22 chr1 167363188 167364351 -114829313 + Tigger1 DNA MER2_type 1 1146 -1272 2394 81 0 3 chr1 167364351 167364647 -114829017 + AluY SINE Alu 1 295 -16 13914 134 36 22 chr1 167364647 167365867 -114827797 + Tigger1 DNA MER2_type 1146 2418 0 544 232 86 0 chr1 167366181 167366332 -114827332 + MIR SINE MIR 98 261 -1 742 308 24 0 chr1 167366498 167366709 -114826955 + MIR SINE MIR 6 221 -41 433 303 100 19 chr1 167367262 167367533 -114826131 + L2 LINE L2 2131 2423 -891 2018 101 73 0 chr1 167367677 167367964 -114825700 - AluSc SINE Alu -1 308 1 574 101 0 0 chr1 167368317 167368396 -114825268 - LTR3b LTR ERVK 0 500 422 1977 161 41 66 chr1 167368417 167368857 -114824807 - LTR3 LTR ERVK 0 429 1 1947 189 105 5 chr1 167369308 167369727 -114823937 - MLT1D LTR MaLR 0 505 45 402 292 163 17 chr1 167370085 167370263 -114823401 - L2 LINE L2 -385 2929 2726 599 290 87 18 chr1 167370281 167370567 -114823097 - L2 LINE L2 -455 2859 2554 377 243 137 71 chr1 167370591 167370817 -114822847 - MIR SINE MIR -20 242 2 1980 101 8 4 chr1 167371154 167371449 -114822215 + AluSq SINE Alu 14 309 0 430 246 58 27 chr1 167371467 167371691 -114821973 + L1ME2 LINE L1 5644 5874 -247 223 250 17 0 chr1 167371822 167371882 -114821782 + GA-rich Low_complexity Low_complexity 2 62 0 26 0 0 0 chr1 167371984 167372010 -114821654 + AT_rich Low_complexity Low_complexity 1 26 0 638 291 20 32 chr1 167372729 167372976 -114820688 + L2 LINE L2 2165 2408 -906 1982 134 21 3 chr1 167373104 167373388 -114820276 + AluSq SINE Alu 1 289 -24 305 250 9 0 chr1 167373388 167373496 -114820168 + (TA)n Simple_repeat Simple_repeat 1 109 0 262 380 0 19 chr1 167373496 167373604 -114820060 + L2 LINE L2 2620 2725 -589 437 258 61 33 chr1 167373628 167373841 -114819823 + L1MCa LINE L1 1423 1641 -4785 2000 104 0 0 chr1 167373847 167374106 -114819558 + AluSx SINE Alu 33 291 -21 342 227 52 41 chr1 167374786 167374883 -114818781 + L1ME2 LINE L1 5948 6045 -119 300 53 0 0 chr1 167374903 167374941 -114818723 + (TG)n Simple_repeat Simple_repeat 2 39 0 549 296 49 70 chr1 167375027 167375369 -114818295 + L2 LINE L2 2782 3114 -199 734 160 100 10 chr1 167375424 167375624 -114818040 - L1ME2 LINE L1 -296 5868 5651 392 162 65 20 chr1 167375929 167376050 -114817614 + L1ME3A LINE L1 5741 5869 -297 535 252 98 5 chr1 167376501 167376715 -114816949 + L1MCa LINE L1 2626 2859 -3567 326 312 71 7 chr1 167376721 167376862 -114816802 - HERV16 LTR ERVL -4835 161 12 498 306 93 52 chr1 167376879 167377222 -114816442 - LTR16A LTR ERVL -6 444 88 1643 254 60 7 chr1 167377283 167377713 -114815951 - L2 LINE L2 -946 2368 1916 4196 209 37 11 chr1 167377826 167378122 -114815542 + L1MB4 LINE L1 4553 4840 -1340 192 97 0 0 chr1 167378122 167378153 -114815511 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7582 45 9 0 chr1 167378153 167379845 -114813819 - L1PA5 LINE L1 -16 6138 4430 4196 209 37 11 chr1 167379845 167381144 -114812520 + L1MB4 LINE L1 4839 6180 0 323 297 203 0 chr1 167381167 167381315 -114812349 - L1ME LINE L1 -299 6240 6063 372 325 104 24 chr1 167381607 167381819 -114811845 + MIR SINE MIR 20 248 -14 326 283 19 9 chr1 167381875 167381981 -114811683 + L2 LINE L2 2510 2616 -698 303 156 125 10 chr1 167381981 167382077 -114811587 + L1ME LINE L1 5326 5432 -730 279 268 107 9 chr1 167382075 167382187 -114811477 - L1ME LINE L1 -2025 4539 4417 * 4067 72 2 21 chr1 167382194 167382765 -114810899 - L1PA13 LINE L1 -2 6161 5602 1521 79 44 4 chr1 167382765 167382994 -114810670 + L1PA13 LINE L1 5364 5601 -562 415 230 9 0 chr1 167382992 167383105 -114810559 - L1ME LINE L1 -2136 4428 4315 * 1569 261 62 30 chr1 167383120 167384057 -114809607 - L1MCc LINE L1 -4890 1156 437 312 288 80 75 chr1 167384249 167384624 -114809040 - L1MCc LINE L1 -5631 414 38 1073 228 46 66 chr1 167384673 167384966 -114808698 + L1ME3 LINE L1 5548 5831 -331 3063 167 97 10 chr1 167384966 167385583 -114808081 + LTR51 LTR ERV1 1 671 0 1073 228 46 66 chr1 167385583 167385730 -114807934 + L1ME3 LINE L1 5831 5979 -183 4061 153 17 13 chr1 167385730 167386548 -114807116 - MER4D LTR ERV1 0 903 1 676 249 5 5 chr1 167386548 167386736 -114806928 + L1ME3 LINE L1 5976 6164 0 241 352 19 0 chr1 167386855 167386960 -114806704 + L2 LINE L2 2553 2659 -655 225 65 0 0 chr1 167387072 167387103 -114806561 + (TG)n Simple_repeat Simple_repeat 2 32 0 2358 138 0 11 chr1 167387889 167388259 -114805405 + MER47A DNA MER2_type 1 366 0 475 296 62 73 chr1 167388490 167388848 -114804816 - L2 LINE L2 -852 2462 2109 183 80 0 0 chr1 167389464 167389489 -114804175 + (CAT)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr1 167389803 167389823 -114803841 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr1 167390092 167390120 -114803544 + AT_rich Low_complexity Low_complexity 1 28 0 384 40 0 0 chr1 167390159 167390209 -114803455 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 275 84 6 chr1 167390690 167390824 -114802840 - MIR SINE MIR -30 232 87 1443 153 61 0 chr1 167391429 167391658 -114802006 + AluSx SINE Alu 37 279 -33 405 0 0 0 chr1 167391658 167391703 -114801961 + (CA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr1 167393301 167393326 -114800338 + AT_rich Low_complexity Low_complexity 1 25 0 40868 36 21 1 chr1 167393326 167399353 -114794311 - L1PA2 LINE L1 -5 6150 1 197 296 56 0 chr1 167399722 167399793 -114793871 + L3 LINE CR1 1498 1572 -5 734 143 40 0 chr1 167401093 167401343 -114792321 + L1MB8 LINE L1 5400 5744 -434 2082 128 3 3 chr1 167401706 167402002 -114791662 + AluSx SINE Alu 1 296 -16 1189 157 8 8 chr1 167402032 167402268 -114791396 + L1MB8 LINE L1 5746 5981 -197 652 85 0 0 chr1 167402271 167402365 -114791299 + HY3 scRNA scRNA 1 94 -7 359 215 11 32 chr1 167402379 167402472 -114791192 + L1MB8 LINE L1 5973 6063 -115 200 362 25 61 chr1 167403599 167403762 -114789902 + L2 LINE L2 2986 3142 -130 1042 193 102 65 chr1 167404029 167404122 -114789542 + MLT1E2 LTR MaLR 70 158 -468 1923 88 0 0 chr1 167404122 167404361 -114789303 - AluSg/x SINE Alu -1 311 73 1042 193 102 65 chr1 167404361 167404753 -114788911 + MLT1E2 LTR MaLR 158 626 0 1062 191 0 0 chr1 167405289 167405483 -114788181 + MER58A DNA MER1_type 31 224 0 449 280 138 16 chr1 167405488 167405677 -114787987 + MIR SINE MIR 23 234 -28 226 65 0 0 chr1 167405748 167405779 -114787885 + U6 snRNA snRNA 77 107 0 362 329 7 29 chr1 167406273 167406410 -114787254 + L2 LINE L2 2441 2574 -740 441 302 181 28 chr1 167406425 167406713 -114786951 + L2 LINE L2 2982 3313 0 215 61 30 0 chr1 167406965 167406998 -114786666 + (TAA)n Simple_repeat Simple_repeat 2 35 0 486 239 40 68 chr1 167407007 167407183 -114786481 - MIR SINE MIR -18 244 74 373 259 35 0 chr1 167407257 167407342 -114786322 + MIR3 SINE MIR 111 198 -10 1944 250 32 45 chr1 167407545 167408138 -114785526 + MLT1E2 LTR MaLR 21 605 -21 1931 157 0 0 chr1 167408385 167408704 -114784960 + AluSx SINE Alu 2 320 0 3232 273 83 9 chr1 167408728 167409779 -114783885 + L1MC/D LINE L1 56 1237 -5159 1782 179 13 13 chr1 167409779 167410087 -114783577 + AluJb SINE Alu 1 308 -4 3232 273 83 9 chr1 167410087 167410429 -114783235 + L1MC/D LINE L1 1237 1552 -4844 538 304 72 16 chr1 167410554 167410873 -114782791 + L1M4c LINE L1 16 352 -6190 1217 197 37 0 chr1 167410881 167411125 -114782539 - MLT1B LTR MaLR -137 253 1 784 301 35 20 chr1 167411125 167411470 -114782194 + L1M4c LINE L1 526 875 -5667 1997 201 23 59 chr1 167411538 167411642 -114782022 + L1M4c LINE L1 882 988 -5554 417 183 43 0 chr1 167411642 167411735 -114781929 + L1MA8 LINE L1 6191 6287 -4 1997 201 23 59 chr1 167411735 167412165 -114781499 + L1M4c LINE L1 988 1388 -5154 1572 186 102 125 chr1 167412165 167412909 -114780755 - LTR8A LTR ERV1 0 727 1 1997 201 23 59 chr1 167412909 167413065 -114780599 + L1M4c LINE L1 1388 1548 -4994 898 151 38 0 chr1 167413108 167413293 -114780371 - L1MA4 LINE L1 -6 6294 6103 27 49 0 0 chr1 167413293 167413334 -114780330 + AT_rich Low_complexity Low_complexity 1 41 0 494 272 32 36 chr1 167413341 167413620 -114780044 + L1MC/D LINE L1 3729 4006 -2209 236 254 0 0 chr1 167413668 167413723 -114779941 + L1MC/D LINE L1 5577 5631 -2246 1382 162 17 12 chr1 167413785 167414026 -114779638 - MSTB LTR MaLR 0 426 185 41851 41 2 1 chr1 167414039 167420184 -114773480 - L1PA4 LINE L1 -3 6152 1 370 204 0 46 chr1 167420202 167420310 -114773354 - L1MA4 LINE L1 -192 6108 6006 2743 149 58 8 chr1 167420317 167420852 -114772812 + LTR49 LTR ERV1 1 562 -33 1594 222 174 4 chr1 167420900 167421350 -114772314 + MLT1D LTR MaLR 1 624 0 821 259 15 11 chr1 167421350 167421612 -114772052 + L1M4c LINE L1 1624 1886 -4760 5123 213 139 17 chr1 167421641 167423169 -114770495 + L1MDa LINE L1 9 1722 -4818 2512 66 0 0 chr1 167424115 167424419 -114769245 + AluY SINE Alu 1 304 -7 24 0 0 0 chr1 167424653 167424677 -114768987 + AT_rich Low_complexity Low_complexity 1 24 0 7567 31 0 2 chr1 167424677 167425820 -114767844 - L1PA3 LINE L1 -3 6152 5011 7371 24 0 0 chr1 167425820 167426721 -114766943 + L1P LINE L1 4053 4953 -1193 2213 206 94 43 chr1 167426823 167427790 -114765874 + L1MDa LINE L1 1914 2929 -3611 * 3149 243 56 10 chr1 167427778 167428089 -114765575 + L1MDa LINE L1 3144 3439 -3101 249 119 0 0 chr1 167428089 167428131 -114765533 + (CA)n Simple_repeat Simple_repeat 1 42 0 3149 243 56 10 chr1 167428131 167428924 -114764740 + L1MDa LINE L1 3439 4299 -2241 2129 182 52 5 chr1 167428928 167429335 -114764329 - MSTB LTR MaLR 0 426 1 1080 238 73 9 chr1 167429338 167429653 -114764011 + L1MDa LINE L1 4302 4636 -1904 319 266 45 42 chr1 167429787 167430028 -114763636 - MER41B LTR ERV1 -205 430 55 1068 150 163 4 chr1 167430840 167431067 -114762597 - MER21B LTR ERV1 -107 756 494 385 258 80 46 chr1 167431161 167431464 -114762200 - MER21B LTR ERV1 -365 498 133 487 247 16 23 chr1 167431484 167431645 -114762019 - MER21B LTR ERV1 -407 198 1 803 234 4 74 chr1 167431918 167432009 -114761655 + MIR SINE MIR 48 144 -118 6058 133 93 18 chr1 167432009 167432813 -114760851 - Tigger3b DNA MER2_type -1797 1231 315 2502 82 0 0 chr1 167432813 167433119 -114760545 - AluSg1 SINE Alu -3 306 1 6058 133 93 18 chr1 167433119 167433459 -114760205 - Tigger3b DNA MER2_type -2713 315 2 803 234 4 74 chr1 167433459 167433527 -114760137 + MIR SINE MIR 144 189 -73 1221 159 5 9 chr1 167433527 167433741 -114759923 + L1PB3 LINE L1 5940 6152 -2 803 234 4 74 chr1 167433741 167433811 -114759853 + MIR SINE MIR 189 262 0 566 131 0 0 chr1 167434196 167434295 -114759369 - L1MA4 LINE L1 -7 6293 6195 263 281 98 30 chr1 167437280 167437444 -114756220 + MARNA DNA Mariner 307 481 -105 4768 237 72 23 chr1 167437490 167437534 -114756130 - L1M1 LINE L1 -540 5626 5586 3382 93 0 12 chr1 167437534 167438016 -114755648 - L1PA10 LINE L1 -5 6163 5688 4768 237 72 23 chr1 167438016 167439070 -114754594 - L1M1 LINE L1 -580 5586 4585 478 82 0 59 chr1 167439070 167439155 -114754509 - L1PA16 LINE L1 0 6166 6087 4768 237 72 23 chr1 167439155 167440307 -114753357 - L1M1 LINE L1 -1581 4585 3326 966 190 13 43 chr1 167440305 167440605 -114753059 - L1MEc LINE L1 -3093 3289 2999 * 714 347 40 21 chr1 167440617 167440989 -114752675 + L1PA13 LINE L1 1 379 -6408 243 353 0 13 chr1 167441219 167441369 -114752295 + L1PA13 LINE L1 1364 1511 -5276 1666 266 19 10 chr1 167442185 167442757 -114750907 + L1PA13 LINE L1 1397 2039 -4748 * 4592 122 18 20 chr1 167442745 167443533 -114750131 + L1PA16 LINE L1 5277 6062 -104 647 126 0 10 chr1 167443723 167443826 -114749838 + L1PA16 LINE L1 6056 6157 -9 26 0 0 0 chr1 167443826 167443852 -114749812 + AT_rich Low_complexity Low_complexity 1 26 0 2079 224 44 37 chr1 167443855 167444396 -114749268 - L1MEc LINE L1 -3383 2999 2483 2222 105 7 3 chr1 167444396 167444690 -114748974 - AluSx SINE Alu -17 295 1 2079 224 44 37 chr1 167444690 167444910 -114748754 - L1MEc LINE L1 -3899 2483 2266 1889 148 0 54 chr1 167444945 167445009 -114748655 + AluSx SINE Alu 1 67 -245 2838 6 0 6 chr1 167445009 167445322 -114748342 - AluYa5 SINE Alu 0 311 1 1889 148 0 54 chr1 167445322 167445574 -114748090 + AluSx SINE Alu 67 300 -12 551 68 0 0 chr1 167445574 167445647 -114748017 - L1MC1 LINE L1 -8 6325 6253 2251 109 0 19 chr1 167445849 167446161 -114747503 - AluSx SINE Alu -6 306 1 366 236 72 46 chr1 167446181 167446376 -114747288 - L1MEc LINE L1 -4486 1898 1699 * 2304 219 79 57 chr1 167446374 167447810 -114745854 - L1MD1 LINE L1 -413 5829 4364 2085 176 95 7 chr1 167447822 167448255 -114745409 - MER66A LTR ERV1 0 478 8 276 271 64 21 chr1 167448277 167448417 -114745247 - L1MD1 LINE L1 -1787 4359 4214 1629 163 13 36 chr1 167449403 167449709 -114743955 + AluJo SINE Alu 1 299 -13 948 129 0 0 chr1 167449852 167449976 -114743688 - AluSq/x SINE Alu -189 124 1 641 267 152 9 chr1 167450459 167450789 -114742875 + Charlie2 DNA MER1_type 170 546 -2236 27 49 0 0 chr1 167450865 167450906 -114742758 + AT_rich Low_complexity Low_complexity 1 41 0 2400 198 79 14 chr1 167450966 167451609 -114742055 + Charlie2a DNA MER1_type 1531 2215 -647 5590 168 46 10 chr1 167451666 167453534 -114740130 - L1PA16 LINE L1 -9 6157 4214 2161 141 0 0 chr1 167453534 167453838 -114739826 + AluSx SINE Alu 1 304 -8 5590 168 46 10 chr1 167453838 167453980 -114739684 - L1PA16 LINE L1 -1952 4214 4079 2470 206 39 0 chr1 167453979 167454537 -114739127 + L1P LINE L1 3391 3970 -2176 * 786 213 112 24 chr1 167454554 167454732 -114738932 + Charlie2a DNA MER1_type 2287 2448 -414 2160 113 0 0 chr1 167454732 167455037 -114738627 - AluY SINE Alu 0 305 1 786 213 112 24 chr1 167455037 167455359 -114738305 + Charlie2a DNA MER1_type 2448 2832 -30 390 319 121 16 chr1 167455582 167455839 -114737825 + L2 LINE L2 1385 1668 -1646 433 333 0 28 chr1 167455880 167456129 -114737535 + L1ME LINE L1 5504 5745 -376 558 277 13 6 chr1 167457164 167457323 -114736341 + MER97a DNA MER1_type? 394 553 -341 988 249 44 25 chr1 167457342 167457659 -114736005 - MER97b DNA MER1_type? -710 343 21 915 234 29 0 chr1 167457660 167457933 -114735731 + L1M4 LINE L1 2849 3129 -3017 * 1703 213 8 5 chr1 167457929 167458324 -114735340 + L1M4 LINE L1 4557 4952 -1194 71 47 0 0 chr1 167458556 167458662 -114735002 + AT_rich Low_complexity Low_complexity 1 106 0 226 367 75 8 chr1 167458861 167458981 -114734683 + L2 LINE L2 3137 3264 -8 231 341 30 60 chr1 167459497 167459764 -114733900 - L2 LINE L2 -1921 1393 1135 1495 191 39 0 chr1 167460085 167460342 -114733322 - AluJo SINE Alu -45 267 1 369 0 0 0 chr1 167460342 167460383 -114733281 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1781 97 0 4 chr1 167460386 167460624 -114733040 - AluSg SINE Alu -37 273 37 651 273 36 27 chr1 167460766 167460986 -114732678 - L3 LINE CR1 -3 1574 1353 643 246 0 0 chr1 167460992 167461194 -114732470 + FLAM_A SINE Alu 1 202 0 733 296 187 21 chr1 167461194 167461670 -114731994 - L3 LINE CR1 -218 1359 805 421 261 54 0 chr1 167461723 167461834 -114731830 + MIR SINE MIR 140 256 -6 603 317 22 6 chr1 167462409 167462589 -114731075 + MER5A DNA MER1_type 7 189 0 227 335 163 28 chr1 167463482 167463697 -114729967 + L2 LINE L2 178 421 -2893 573 328 26 84 chr1 167463963 167464381 -114729283 + L2 LINE L2 2878 3271 -1 39042 63 6 3 chr1 167465257 167471375 -114722289 + L1PA5 LINE L1 11 6149 -5 252 0 0 0 chr1 167472071 167472099 -114721565 + (CA)n Simple_repeat Simple_repeat 2 29 0 584 278 51 28 chr1 167472760 167472972 -114720692 - MIR SINE MIR -24 238 8 4402 170 28 51 chr1 167474134 167475543 -114718121 - L1MB7 LINE L1 -17 6167 4803 189 107 0 0 chr1 167475544 167475572 -114718092 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 946 144 7 13 chr1 167475572 167475725 -114717939 - AluJ SINE Alu -27 285 134 1153 192 46 14 chr1 167475740 167476021 -114717643 - L1MB7 LINE L1 -1382 4764 4475 252 284 0 0 chr1 167476106 167476173 -114717491 + CT-rich Low_complexity Low_complexity 2 68 0 270 0 0 0 chr1 167476528 167476558 -114717106 + (CA)n Simple_repeat Simple_repeat 2 31 0 1465 150 131 29 chr1 167476620 167476894 -114716770 + AluJo SINE Alu 1 302 -10 192 77 0 0 chr1 167477629 167477655 -114716009 + (TC)n Simple_repeat Simple_repeat 1 26 0 907 144 0 0 chr1 167478670 167478802 -114714862 - AluJ SINE Alu -180 132 1 250 313 57 78 chr1 167478841 167479071 -114714593 - L2 LINE L2 -220 3052 2828 181 231 0 0 chr1 167479338 167479377 -114714287 + MIR SINE MIR 203 241 -21 217 325 0 36 chr1 167479591 167479674 -114713990 + L2 LINE L2 3234 3313 0 898 188 10 5 chr1 167479815 167480017 -114713647 + L1P3 LINE L1 2 204 -5671 3665 174 48 5 chr1 167480147 167480938 -114712726 + L1MB8 LINE L1 5353 6177 -1 558 170 9 0 chr1 167481034 167481140 -114712524 + L1M4 LINE L1 2445 2551 -3595 10614 30 6 0 chr1 167481299 167483336 -114710328 - L1PA3 LINE L1 -2 6153 4109 1034 253 68 8 chr1 167483339 167483813 -114709851 - L1MB7 LINE L1 -2824 3322 2821 1010 225 77 12 chr1 167483857 167484195 -114709469 - L1MB7 LINE L1 -3584 2562 2203 996 243 91 10 chr1 167484204 167484513 -114709151 - MLT1C LTR MaLR -128 339 6 504 261 48 39 chr1 167484514 167484864 -114708800 - L1MCa LINE L1 -4505 1921 1668 * 1034 280 0 40 chr1 167484840 167485005 -114708659 - L1MCa LINE L1 -5126 1300 1130 1657 161 0 86 chr1 167485005 167485222 -114708442 - AluSx SINE Alu -5 307 128 2397 86 0 13 chr1 167485222 167485537 -114708127 - AluY SINE Alu 0 311 1 1657 161 0 86 chr1 167485537 167485655 -114708009 - AluSx SINE Alu -184 128 1 1034 280 0 40 chr1 167485655 167485961 -114707703 - L1MCa LINE L1 -5296 1130 848 1097 191 10 19 chr1 167485962 167486171 -114707493 - AluJo SINE Alu -9 303 97 507 327 53 30 chr1 167486447 167486808 -114706856 - L2 LINE L2 -867 2447 2079 1688 173 9 31 chr1 167487474 167487792 -114705872 - AluJb SINE Alu -1 311 1 2221 170 51 0 chr1 167487819 167488230 -114705434 + MSTB1 LTR MaLR 1 432 0 2312 96 0 0 chr1 167488499 167488792 -114704872 + AluSg SINE Alu 1 293 -17 496 253 36 66 chr1 167488962 167489128 -114704536 - MIR SINE MIR 0 262 102 321 219 16 0 chr1 167489909 167489973 -114703691 - MER5A DNA MER1_type -116 73 9 26 0 0 0 chr1 167490450 167490476 -114703188 + AT_rich Low_complexity Low_complexity 1 26 0 203 355 0 13 chr1 167490489 167490565 -114703099 - L3 LINE CR1 -100 1477 1403 196 200 20 40 chr1 167490619 167490669 -114702995 + L2 LINE L2 3216 3264 -8 216 333 44 0 chr1 167490952 167491042 -114702622 + MIR3 SINE MIR 113 206 -2 496 254 97 0 chr1 167491193 167491327 -114702337 - MIR SINE MIR -10 252 106 256 220 20 0 chr1 167491621 167491671 -114701993 + L3 LINE CR1 1422 1472 -105 486 326 90 15 chr1 167492360 167492485 -114701179 - MIR SINE MIR -15 247 133 7074 43 0 5 chr1 167492485 167493443 -114700221 - L1PA5 LINE L1 -5 6149 5183 486 326 90 15 chr1 167493443 167493547 -114700117 - MIR SINE MIR -129 133 4 22 70 0 0 chr1 167494446 167494489 -114699175 + AT_rich Low_complexity Low_complexity 1 43 0 2483 215 25 10 chr1 167496170 167496779 -114696885 + L1MB7 LINE L1 5401 6018 -166 2233 87 0 0 chr1 167497373 167497648 -114696016 - AluSc SINE Alu -33 276 2 582 245 83 10 chr1 167497817 167498021 -114695643 + L1ME LINE L1 4174 4392 -1754 10062 36 3 4 chr1 167498148 167499436 -114694228 - L1P LINE L1 -1298 4848 3562 4388 223 23 61 chr1 167499415 167501241 -114692423 - L1P3 LINE L1 -4125 2336 568 * 11395 89 21 2 chr1 167501350 167502036 -114691628 + L1PA7 LINE L1 3550 4221 -1933 2386 105 0 0 chr1 167502036 167502341 -114691323 + AluSc SINE Alu 1 305 -4 11395 89 21 2 chr1 167502341 167504197 -114689467 + L1PA7 LINE L1 4221 6154 0 411 323 94 12 chr1 167504441 167504751 -114688913 + L1ME LINE L1 5370 5698 -423 290 207 26 95 chr1 167504936 167505052 -114688612 + L1ME LINE L1 5707 5814 -307 263 267 64 59 chr1 167505094 167505281 -114688383 + MLT1J LTR MaLR 1 188 -323 270 305 41 58 chr1 167505317 167505609 -114688055 + L1MEc LINE L1 38 324 -6072 1367 274 54 43 chr1 167505875 167506246 -114687418 + L1MEc LINE L1 503 868 -5347 2310 134 28 14 chr1 167506246 167506605 -114687059 - THE1B LTR MaLR 0 364 1 1367 274 54 43 chr1 167506605 167507161 -114686503 + L1MEc LINE L1 868 1390 -4825 215 31 31 0 chr1 167507330 167507362 -114686302 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 6784 174 9 39 chr1 167507424 167509827 -114683837 + L1PA8A LINE L1 8 2428 -4033 2337 100 3 3 chr1 167509827 167510136 -114683528 + AluSq SINE Alu 1 309 -4 6784 174 9 39 chr1 167510136 167510410 -114683254 + L1PA8A LINE L1 2428 2709 -3752 1080 75 0 8 chr1 167511213 167511346 -114682318 + AluSq/x SINE Alu 19 150 -162 1706 109 30 19 chr1 167511858 167512125 -114681539 + L1PA10 LINE L1 5899 6168 0 4584 149 4 4 chr1 167512125 167512959 -114680705 + L1PA8A LINE L1 2692 3525 -2936 728 143 8 0 chr1 167512971 167513090 -114680574 + L1MA3 LINE L1 6186 6305 0 40712 34 23 1 chr1 167513172 167519192 -114674472 - L1PA3 LINE L1 -3 6152 1 12959 113 19 2 chr1 167519206 167522080 -114671584 + L1PA8A LINE L1 3520 6439 -7 1087 285 38 0 chr1 167522089 167522513 -114671151 + L1MEc LINE L1 1627 2066 -4330 564 84 75 0 chr1 167522522 167522629 -114671035 - Charlie5 DNA MER1_type 0 2613 2499 4752 193 141 98 chr1 167522647 167523583 -114670081 + L1MCa LINE L1 79 973 -5453 2182 105 6 29 chr1 167523583 167523897 -114669767 + AluSg SINE Alu 1 307 -3 4752 193 141 98 chr1 167523897 167525289 -114668375 + L1MCa LINE L1 973 2504 -3922 25 65 0 0 chr1 167527410 167527456 -114666208 + AT_rich Low_complexity Low_complexity 1 46 0 463 249 56 58 chr1 167527721 167527988 -114665676 - L1MC4 LINE L1 -151 7674 7406 742 224 168 0 chr1 167527988 167528238 -114665426 + L2 LINE L2 1821 2112 -1202 278 247 0 0 chr1 167528240 167528313 -114665351 - L1M4 LINE L1 -3139 3007 2935 2397 90 0 0 chr1 167529460 167529759 -114663905 + AluSc SINE Alu 1 299 -10 536 269 138 12 chr1 167530024 167530184 -114663480 - MIR3 SINE MIR -15 193 14 1859 108 4 12 chr1 167532993 167533252 -114660412 + AluSx SINE Alu 1 257 -55 945 243 43 31 chr1 167534145 167534400 -114659264 + MIR SINE MIR 5 262 0 222 360 11 22 chr1 167535634 167535723 -114657941 + MIR SINE MIR 32 119 -89 295 310 27 59 chr1 167536732 167536919 -114656745 + L3 LINE CR1 1146 1326 -251 2512 74 0 0 chr1 167538182 167538481 -114655183 - AluSc SINE Alu -8 301 3 21 0 0 0 chr1 167538484 167538505 -114655159 + AT_rich Low_complexity Low_complexity 1 21 0 347 307 257 25 chr1 167538652 167538854 -114654810 - MIR SINE MIR -10 252 4 339 271 85 23 chr1 167541552 167541681 -114651983 - HAL1 LINE L1 -1422 1085 949 28 0 0 0 chr1 167541749 167541777 -114651887 + AT_rich Low_complexity Low_complexity 1 28 0 813 203 58 0 chr1 167541777 167541984 -114651680 - L1MA8 LINE L1 -2 6289 6071 231 240 64 48 chr1 167542005 167542130 -114651534 - HAL1 LINE L1 -1606 901 775 319 344 8 78 chr1 167542138 167542394 -114651270 - HAL1 LINE L1 -1765 742 505 266 188 72 14 chr1 167542551 167542620 -114651044 - HAL1 LINE L1 -2410 97 25 273 310 52 9 chr1 167543410 167543526 -114650138 + MIR SINE MIR 46 166 -96 213 259 274 37 chr1 167543697 167543832 -114649832 + MIR SINE MIR 20 186 -76 1603 203 10 3 chr1 167545665 167545961 -114647703 - AluJb SINE Alu -14 298 1 261 277 96 85 chr1 167546559 167546747 -114646917 + MIR SINE MIR 2 191 -71 896 316 107 11 chr1 167546787 167547160 -114646504 + L2 LINE L2 2905 3313 0 346 224 50 50 chr1 167547808 167547961 -114645703 + MIR SINE MIR 38 193 -69 2017 165 10 0 chr1 167548010 167548319 -114645345 + AluJo SINE Alu 1 312 0 1752 142 51 4 chr1 167548381 167548656 -114645008 + AluSg SINE Alu 1 288 -22 284 306 199 23 chr1 167549097 167549525 -114644139 - L2 LINE L2 -997 2317 1815 1592 183 33 7 chr1 167550054 167550354 -114643310 - AluJb SINE Alu -4 308 1 1583 163 12 43 chr1 167550356 167550625 -114643039 - MER65A LTR ERV1 -130 315 56 1739 172 10 7 chr1 167550625 167550922 -114642742 - AluJo SINE Alu -14 298 1 1583 163 12 43 chr1 167550922 167550977 -114642687 - MER65A LTR ERV1 -389 56 1 2018 162 40 3 chr1 167551613 167551989 -114641675 - MLT1B LTR MaLR 0 390 1 232 347 105 11 chr1 167552083 167552178 -114641486 + L2 LINE L2 3208 3311 -2 2248 159 27 10 chr1 167552482 167552896 -114640768 - MSTB LTR MaLR 0 426 6 306 345 28 28 chr1 167553124 167553269 -114640395 + L3 LINE CR1 1421 1565 -12 202 295 77 0 chr1 167553915 167553993 -114639671 - MIR SINE MIR -108 154 71 1846 167 46 0 chr1 167557677 167558006 -114635658 + MER2 DNA MER2_type 1 344 0 2218 101 14 0 chr1 167558674 167558962 -114634702 - AluSc SINE Alu -14 295 4 234 93 163 0 chr1 167558969 167559012 -114634652 - Alu SINE Alu -5 294 245 3036 163 88 73 chr1 167559027 167559285 -114634379 + L1 LINE L1 2924 3177 -2969 2375 60 0 0 chr1 167559285 167559588 -114634076 + AluY SINE Alu 1 303 0 3036 163 88 73 chr1 167559588 167559719 -114633945 + L1 LINE L1 3177 3305 -2841 1985 119 70 0 chr1 167559719 167560004 -114633660 + AluSq SINE Alu 1 305 -8 3036 163 88 73 chr1 167560004 167560126 -114633538 + L1 LINE L1 3305 3424 -2722 1697 184 10 14 chr1 167560126 167560420 -114633244 + AluJo SINE Alu 1 293 -19 3036 163 88 73 chr1 167560420 167560828 -114632836 + L1 LINE L1 3424 3861 -2285 15530 133 19 19 chr1 167560937 167562148 -114631516 - L1P LINE L1 -2562 3584 2374 15591 29 5 0 chr1 167562148 167564776 -114628888 - L1PA4 LINE L1 0 6155 3516 15530 133 19 19 chr1 167564776 167566379 -114627285 - L1P LINE L1 -3771 2375 770 3144 155 25 5 chr1 167566385 167567408 -114626256 - L1M1 LINE L1 -582 5721 4683 6472 139 97 21 chr1 167567878 167570103 -114623561 - L1MA8 LINE L1 -2 6289 3888 288 0 0 0 chr1 167570161 167570193 -114623471 + (G)n Simple_repeat Simple_repeat 1 32 0 877 121 100 7 chr1 167570881 167571021 -114622643 - FRAM SINE Alu -15 161 9 4237 162 79 66 chr1 167571021 167572183 -114621481 - L1MD1 LINE L1 -48 6588 5372 934 163 85 44 chr1 167572185 167572418 -114621246 - L1MD1 LINE L1 -3174 3366 3117 2517 133 25 37 chr1 167572418 167572855 -114620809 + MSTB1 LTR MaLR 1 432 0 934 163 85 44 chr1 167572855 167572916 -114620748 - L1MD1 LINE L1 -3423 3117 3060 1089 199 65 78 chr1 167572916 167573298 -114620366 - MLT1D LTR MaLR -127 378 2 6042 185 74 55 chr1 167573304 167573398 -114620266 - L1MD1 LINE L1 -3865 2675 2584 2378 80 3 3 chr1 167573398 167573697 -114619967 - AluSp SINE Alu -14 299 1 6042 185 74 55 chr1 167573697 167574594 -114619070 - L1MD1 LINE L1 -3956 2584 1705 2534 60 0 0 chr1 167574594 167574895 -114618769 - AluSc SINE Alu -7 302 2 6042 185 74 55 chr1 167574895 167576002 -114617662 - L1MD1 LINE L1 -4835 1705 291 2251 124 43 0 chr1 167576002 167576349 -114617315 + THE1B LTR MaLR 1 362 -2 6042 185 74 55 chr1 167576349 167576631 -114617033 - L1MD1 LINE L1 -6249 291 16 295 228 69 97 chr1 167576633 167576710 -114616954 + MIR SINE MIR 122 195 -67 2144 103 7 7 chr1 167576710 167577010 -114616654 - AluSx SINE Alu -3 309 10 295 228 69 97 chr1 167577010 167577077 -114616587 + MIR SINE MIR 195 262 0 1016 193 22 5 chr1 167578213 167578436 -114615228 - L1M4 LINE L1 -2384 3762 3536 1982 129 25 3 chr1 167578700 167578986 -114614678 - AluJb SINE Alu -20 292 1 462 325 97 15 chr1 167578990 167579258 -114614406 - L1ME4a LINE L1 -200 5921 5632 514 276 0 8 chr1 167579438 167579572 -114614092 + L2 LINE L2 3180 3312 -1 2391 90 3 0 chr1 167580476 167580777 -114612887 - AluSp SINE Alu -11 302 1 245 327 40 0 chr1 167581395 167581496 -114612168 - L2 LINE L2 -222 3050 2946 596 238 56 7 chr1 167581958 167582101 -114611563 + MIR SINE MIR 47 196 -66 589 239 101 25 chr1 167582906 167583065 -114610599 - MIR SINE MIR -44 218 48 219 355 40 13 chr1 167583428 167583504 -114610160 - L3 LINE CR1 -1 1576 1499 324 248 41 0 chr1 167584285 167584406 -114609258 - L1ME LINE L1 -362 5759 5634 285 345 83 35 chr1 167584474 167584703 -114608961 + L2 LINE L2 1874 2113 -1201 * 465 274 160 11 chr1 167584643 167584818 -114608846 + MIR SINE MIR 52 252 -10 2025 126 0 68 chr1 167585209 167585575 -114608089 - L1MC1 LINE L1 0 6333 5993 1024 215 138 31 chr1 167586474 167586799 -114606865 - MSTD LTR MaLR -36 360 1 2475 67 0 3 chr1 167587166 167587466 -114606198 + AluY SINE Alu 1 299 -12 328 211 38 60 chr1 167587469 167587602 -114606062 + L1ME4a LINE L1 5730 5859 -262 267 272 0 0 chr1 167588275 167588367 -114605297 + (TA)n Simple_repeat Simple_repeat 1 92 0 1795 160 3 7 chr1 167588412 167588700 -114604964 + AluJb SINE Alu 14 300 -12 22 0 0 0 chr1 167589645 167589667 -114603997 + AT_rich Low_complexity Low_complexity 1 22 0 529 110 10 90 chr1 167590582 167590682 -114602982 + MER53 DNA DNA 98 189 0 370 289 39 16 chr1 167590737 167590865 -114602799 + MIR SINE MIR 21 151 -111 2216 192 130 16 chr1 167591642 167592281 -114601383 + Tigger7 DNA MER2_type 1 2587 0 305 276 106 88 chr1 167593291 167593678 -114599986 + L1M2 LINE L1 999 1392 -5457 228 259 12 49 chr1 167593976 167594057 -114599607 - L2 LINE L2 -1 3312 3235 361 259 63 49 chr1 167594356 167594499 -114599165 - MIR SINE MIR -1 261 117 3069 58 95 7 chr1 167594780 167595192 -114598472 - LTR7 LTR ERV1 -2 448 1 262 215 247 21 chr1 167595206 167595299 -114598365 - L2 LINE L2 -33 3280 3167 6659 113 11 11 chr1 167595309 167596278 -114597386 - LTR5 LTR ERVK 0 969 1 795 251 68 8 chr1 167596728 167596991 -114596673 - L2 LINE L2 -613 2701 2423 356 185 0 0 chr1 167597025 167597090 -114596574 - LTR6B LTR ERV1 0 558 494 273 123 0 5 chr1 167597267 167597326 -114596338 - L1MA7 LINE L1 -1 6290 6242 296 322 70 17 chr1 167597457 167597572 -114596092 - MLT1I LTR MaLR -188 221 101 420 20 0 0 chr1 167597717 167597766 -114595898 + (TG)n Simple_repeat Simple_repeat 2 50 0 215 224 61 0 chr1 167598018 167598067 -114595597 - MIR SINE MIR -71 191 140 8666 183 33 80 chr1 167598469 167600311 -114593353 - MER52A LTR ERV1 0 1755 1 240 235 0 0 chr1 167601272 167601323 -114592341 + MIR SINE MIR 92 142 -120 191 105 26 0 chr1 167601391 167601429 -114592235 - L2 LINE L2 0 3313 3275 1548 48 0 0 chr1 167601429 167601617 -114592047 + LTR6B LTR ERV1 1 188 -370 1979 144 14 0 chr1 167602494 167602786 -114590878 + AluJb SINE Alu 1 296 -16 264 352 83 9 chr1 167603195 167603303 -114590361 + L2 LINE L2 3115 3230 -42 1436 206 113 59 chr1 167603487 167603875 -114589789 + LTR2 LTR ERV1 41 449 0 2368 59 0 13 chr1 167604819 167605122 -114588542 + AluY SINE Alu 1 299 -12 857 249 100 12 chr1 167606429 167606670 -114586994 + MIR SINE MIR 1 262 0 316 50 0 0 chr1 167607042 167607082 -114586582 + MER5B DNA MER1_type 124 163 -15 1972 156 7 0 chr1 167607254 167607543 -114586121 - AluSx SINE Alu -21 291 1 2849 131 48 22 chr1 167608187 167608685 -114584979 - L1MC3 LINE L1 -7 7778 7268 402 179 13 0 chr1 167608802 167608880 -114584784 - L1PA16 LINE L1 0 6166 6088 617 195 8 0 chr1 167608884 167609002 -114584662 + L1P LINE L1 4924 5042 -1104 806 167 0 21 chr1 167609005 167609149 -114584515 - L1MC3 LINE L1 -508 7277 7137 2804 236 18 43 chr1 167609158 167609507 -114584157 - L1M4 LINE L1 -1468 4678 4322 2354 99 0 3 chr1 167609507 167609809 -114583855 + AluSg SINE Alu 1 301 -9 2804 236 18 43 chr1 167609809 167610223 -114583441 - L1M4 LINE L1 -1824 4322 3934 327 287 178 46 chr1 167610722 167610896 -114582768 - L2 LINE L2 -181 3091 2895 2288 85 0 10 chr1 167611115 167611409 -114582255 + AluSc SINE Alu 1 291 -18 335 289 51 32 chr1 167611412 167611568 -114582096 - L1ME LINE L1 -328 5793 5635 200 304 274 0 chr1 167611687 167611789 -114581875 - L2 LINE L2 -4 3268 3139 2492 67 6 3 chr1 167612383 167612695 -114580969 - AluSp SINE Alu 0 313 1 530 188 0 20 chr1 167612838 167612939 -114580725 - MER5A DNA MER1_type -80 109 11 281 272 39 0 chr1 167612981 167613084 -114580580 - L1ME LINE L1 -366 5755 5649 793 244 31 35 chr1 167613346 167613596 -114580068 - MLT1H1 LTR MaLR -294 261 41 486 328 10 46 chr1 167614371 167614566 -114579098 + MIR3 SINE MIR 20 207 -1 34 0 0 0 chr1 167614867 167614901 -114578763 + AT_rich Low_complexity Low_complexity 1 34 0 404 273 33 41 chr1 167614991 167615112 -114578552 - L2 LINE L2 -220 3052 2933 2323 113 3 0 chr1 167615176 167615487 -114578177 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 167615576 167615597 -114578067 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr1 167618280 167618309 -114575355 + AT_rich Low_complexity Low_complexity 1 29 0 312 318 88 41 chr1 167618887 167619057 -114574607 - MIR SINE MIR -10 252 75 690 262 134 5 chr1 167619436 167619638 -114574026 + MIR SINE MIR 23 250 -12 199 294 29 29 chr1 167619797 167619865 -114573799 + MIR3 SINE MIR 138 205 -3 235 421 28 24 chr1 167619884 167620138 -114573526 - L2 LINE L2 -177 3095 2841 2527 40 0 59 chr1 167620201 167620524 -114573140 - AluY SINE Alu -7 304 1 2230 108 23 0 chr1 167620923 167621228 -114572436 + AluSx SINE Alu 1 312 0 210 224 35 86 chr1 167621422 167621480 -114572184 - L2 LINE L2 -18 3254 3200 373 257 28 0 chr1 167621509 167621618 -114572046 - MIR SINE MIR 0 262 151 2059 158 171 0 chr1 167621620 167622006 -114571658 - LTR47A LTR ERVL 0 452 1 293 301 0 12 chr1 167622013 167622096 -114571568 - MIR SINE MIR -115 147 66 1196 171 64 109 chr1 167622261 167622711 -114570953 - L1MC4 LINE L1 0 8042 7613 24935 41 3 0 chr1 167622727 167626399 -114567265 - L1PA4 LINE L1 -11 6144 2462 2831 115 0 0 chr1 167626399 167626783 -114566881 - L1P LINE L1 -5762 384 1 297 167 111 14 chr1 167626869 167626941 -114566723 + MLT1J2 LTR MaLR 349 427 -23 553 61 107 150 chr1 167626999 167627175 -114566489 + LTR14B LTR ERVK 1 362 -246 6045 84 27 11 chr1 167627179 167628026 -114565638 + SVA Other Other 6 866 -520 5063 29 5 0 chr1 167628154 167629194 -114564470 - L1PA4 LINE L1 -318 5837 4793 951 251 101 20 chr1 167629204 167629551 -114564113 - L1MC4a LINE L1 -297 7511 7137 215 318 186 0 chr1 167631696 167631825 -114561839 - L2 LINE L2 -561 2753 2601 2369 99 0 0 chr1 167632145 167632449 -114561215 + AluSg SINE Alu 1 304 -6 287 123 0 53 chr1 167632489 167632546 -114561118 - MADE1 DNA Mariner -26 54 1 503 214 36 57 chr1 167632654 167632794 -114560870 + MIR SINE MIR 80 216 -46 323 333 54 36 chr1 167633766 167633934 -114559730 - MER5B DNA MER1_type -1 177 7 1096 295 94 63 chr1 167634173 167634803 -114558861 + L3 LINE CR1 928 1576 -1 2330 96 0 3 chr1 167635883 167636195 -114557469 - AluY SINE Alu 0 311 1 253 309 85 11 chr1 167636408 167636502 -114557162 + L2 LINE L2 3201 3301 -12 360 338 28 14 chr1 167636853 167636979 -114556685 - L2 LINE L2 -3 3269 3139 2393 111 46 32 chr1 167636979 167637349 -114556315 - THE1C LTR MaLR 0 375 1 360 338 28 14 chr1 167637349 167637367 -114556297 - L2 LINE L2 -133 3139 3123 222 325 151 38 chr1 167637700 167637965 -114555699 - L2 LINE L2 -554 2760 2466 33 0 0 0 chr1 167638146 167638179 -114555485 + AT_rich Low_complexity Low_complexity 1 33 0 1008 318 61 28 chr1 167638547 167638971 -114554693 + L3 LINE CR1 1083 1520 -57 1054 98 0 0 chr1 167639331 167639464 -114554200 + AluSq/x SINE Alu 1 133 -180 28195 37 2 1 chr1 167639483 167643101 -114550563 + L1PA4 LINE L1 1378 4999 -1147 7396 41 0 0 chr1 167643103 167644083 -114549581 + L1PA4 LINE L1 5176 6155 0 2237 103 3 0 chr1 167645481 167645771 -114547893 - AluSg SINE Alu -19 291 1 189 0 0 0 chr1 167646019 167646040 -114547624 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 462 33 16 0 chr1 167646040 167646101 -114547563 - L1PA5 LINE L1 -15 6139 6078 2076 144 3 3 chr1 167646220 167646525 -114547139 - AluJb SINE Alu -7 305 1 244 401 18 30 chr1 167647306 167647473 -114546191 + L2 LINE L2 3106 3270 -2 250 272 217 0 chr1 167648092 167648184 -114545480 + L2 LINE L2 3150 3261 -11 3705 152 42 6 chr1 167649807 167650525 -114543139 + L1MC3 LINE L1 7027 7770 -15 442 320 84 45 chr1 167651025 167651381 -114542283 + L2 LINE L2 2944 3313 0 2303 69 3 3 chr1 167651559 167651849 -114541815 - AluY SINE Alu -21 290 1 2270 275 137 22 chr1 167651967 167652207 -114541457 + L2 LINE L2 450 661 -2653 1492 248 81 21 chr1 167652207 167652687 -114540977 - MLT1J LTR MaLR 0 511 3 2270 275 137 22 chr1 167652687 167653341 -114540323 + L2 LINE L2 661 1447 -1867 1332 130 10 0 chr1 167653352 167653559 -114540105 - MER68 LTR ERV1 -297 265 57 390 153 42 0 chr1 167653578 167653650 -114540014 - L1MC3 LINE L1 -653 7132 7058 242 159 0 87 chr1 167653658 167653727 -114539937 - L1MC4a LINE L1 -1623 6185 6123 681 245 98 6 chr1 167653795 167653958 -114539706 + MER5A DNA MER1_type 3 180 -9 2150 111 0 22 chr1 167654176 167654492 -114539172 + AluSc SINE Alu 1 309 0 425 270 58 11 chr1 167654618 167654807 -114538857 - L1MD3 LINE L1 0 7995 7798 568 224 7 0 chr1 167656733 167656880 -114536784 - L1MD3 LINE L1 -194 7801 7654 4267 170 91 13 chr1 167656912 167657893 -114535771 - L1MC3 LINE L1 -202 7583 6527 310 294 29 29 chr1 167657897 167657999 -114535665 - MIR3 SINE MIR -39 169 68 249 206 0 118 chr1 167658326 167658428 -114535236 + MIR SINE MIR 127 216 -46 1604 186 112 55 chr1 167658653 167659022 -114534642 - L1ME1 LINE L1 -2 6164 5751 1653 159 43 84 chr1 167659022 167659413 -114534251 - THE1C LTR MaLR 0 375 1 1604 186 112 55 chr1 167659413 167659607 -114534057 - L1ME1 LINE L1 -415 5751 5569 276 333 56 31 chr1 167660691 167660853 -114532811 + L3 LINE CR1 1346 1511 -66 378 200 35 12 chr1 167660992 167661077 -114532587 - MER5A DNA MER1_type -87 102 16 2138 82 0 0 chr1 167661470 167661749 -114531915 - AluSc SINE Alu -30 279 1 331 287 154 57 chr1 167662302 167662633 -114531031 - L1M2 LINE L1 -5836 1013 651 2165 93 33 7 chr1 167663890 167664192 -114529472 + AluSx SINE Alu 1 310 -2 278 211 0 0 chr1 167664908 167664960 -114528704 + MER5B DNA MER1_type 1 52 -126 502 238 22 49 chr1 167664968 167665191 -114528473 - L1MC5 LINE L1 -48 7913 7697 731 164 16 0 chr1 167665671 167665793 -114527871 - MER58B DNA MER1_type -1 340 217 878 176 0 26 chr1 167665803 167665956 -114527708 + FRAM SINE Alu 1 148 -28 209 176 20 20 chr1 167668355 167668406 -114525258 + GA-rich Low_complexity Low_complexity 2 52 0 1135 182 5 10 chr1 167668756 167668959 -114524705 + AluJo SINE Alu 86 287 -25 349 330 9 0 chr1 167669240 167669346 -114524318 + MIR3 SINE MIR 50 156 -52 2228 65 0 4 chr1 167669444 167669719 -114523945 + AluY SINE Alu 1 274 -37 1333 123 38 0 chr1 167670293 167670529 -114523135 - L1MA6 LINE L1 0 6300 6056 2001 126 0 14 chr1 167670541 167670827 -114522837 + AluJb SINE Alu 11 292 -20 29 0 0 0 chr1 167670834 167670863 -114522801 + AT_rich Low_complexity Low_complexity 1 29 0 4342 144 17 11 chr1 167670910 167671667 -114521997 - L1MB7 LINE L1 -16 6168 5407 270 318 103 16 chr1 167671799 167671925 -114521739 - MIR SINE MIR -55 207 71 360 276 43 30 chr1 167673662 167673833 -114519831 - MER5A DNA MER1_type -2 176 1 347 285 150 48 chr1 167673846 167674053 -114519611 - MIR SINE MIR -28 234 7 351 283 154 25 chr1 167674810 167675035 -114518629 - MIR SINE MIR -7 255 16 22 0 0 0 chr1 167676187 167676209 -114517455 + AT_rich Low_complexity Low_complexity 1 22 0 506 291 34 23 chr1 167679934 167680109 -114513555 + MER5B DNA MER1_type 1 177 -1 263 221 132 0 chr1 167681865 167681933 -114511731 + L1MCa LINE L1 348 424 -6183 893 191 142 81 chr1 167681936 167682238 -114511426 + MLT1D LTR MaLR 72 407 -98 2198 51 18 0 chr1 167682238 167682513 -114511151 - L1PA3 LINE L1 -3 6152 5873 893 191 142 81 chr1 167682513 167682619 -114511045 + MLT1D LTR MaLR 407 505 0 1179 208 80 51 chr1 167682625 167683197 -114510467 + L1MCa LINE L1 860 1448 -5159 1225 189 45 65 chr1 167683209 167683563 -114510101 + MLT1A1 LTR MaLR 19 365 0 742 261 55 15 chr1 167683566 167683968 -114509696 + L1MCa LINE L1 1258 1675 -4751 1565 174 34 20 chr1 167683983 167684276 -114509388 + AluJo SINE Alu 1 297 -15 786 184 45 14 chr1 167684288 167684505 -114509159 + L1MDa LINE L1 18 342 -6198 * 1372 179 19 0 chr1 167684502 167684765 -114508899 - L1M4 LINE L1 -1183 4963 4696 845 177 0 0 chr1 167684771 167684895 -114508769 - FLAM_C SINE Alu -19 124 1 1936 212 38 11 chr1 167684895 167685424 -114508240 - L1M4 LINE L1 -1441 4705 4163 205 321 25 49 chr1 167685756 167685837 -114507827 + L2 LINE L2 3229 3307 -6 4352 77 3 0 chr1 167686084 167686679 -114506985 - HERVL-A1 LTR ERVL -5057 597 1 347 71 0 18 chr1 167686679 167686735 -114506929 - MLT2A1 LTR ERVL 0 453 399 291 114 0 0 chr1 167686735 167686779 -114506885 + (TA)n Simple_repeat Simple_repeat 1 44 0 2642 87 41 8 chr1 167686790 167687181 -114506483 - MLT2A1 LTR ERVL -40 404 1 683 200 0 0 chr1 167687914 167688029 -114505635 - FLAM_C SINE Alu -18 115 1 1229 221 108 57 chr1 167689194 167689850 -114503814 + L1ME1 LINE L1 4295 4988 -1158 1837 152 35 0 chr1 167689850 167690166 -114503498 + L1MA4 LINE L1 5970 6296 -4 1229 221 108 57 chr1 167690166 167690188 -114503476 + L1ME1 LINE L1 4988 5007 -1139 * 10750 198 42 19 chr1 167690186 167690455 -114503209 + L1M2 LINE L1 2753 3014 -3298 1822 164 0 7 chr1 167690455 167690771 -114502893 + AluSx SINE Alu 1 284 -28 10750 198 42 19 chr1 167690771 167693387 -114500277 + L1M2 LINE L1 3014 5703 -609 502 90 0 0 chr1 167693382 167693449 -114500215 - L1PA16 LINE L1 -236 5930 5864 * 1965 232 11 2 chr1 167693441 167693877 -114499787 - L1P LINE L1 -1623 4523 4084 295 239 63 19 chr1 167693943 167694102 -114499562 + L1MB7 LINE L1 3028 3193 -2953 * 3066 212 29 11 chr1 167694076 167694803 -114498861 + L1P LINE L1 3344 4083 -2063 1901 262 71 41 chr1 167694797 167694865 -114498799 + L1ME1 LINE L1 5121 5185 -981 * 2282 110 0 3 chr1 167694865 167695174 -114498490 + AluSx SINE Alu 1 308 -4 1901 262 71 41 chr1 167695174 167696009 -114497655 + L1ME1 LINE L1 5185 6063 -103 1514 171 44 54 chr1 167696009 167696324 -114497340 - AluJb SINE Alu 0 312 1 1901 262 71 41 chr1 167696324 167696425 -114497239 + L1ME1 LINE L1 6063 6159 -7 2655 262 22 38 chr1 167696426 167697459 -114496205 + L1MB7 LINE L1 3848 4864 -1282 1629 265 100 25 chr1 167697535 167698410 -114495254 + L1ME1 LINE L1 5189 6161 -5 1369 281 74 39 chr1 167698437 167699277 -114494387 + L1ME3 LINE L1 4338 5148 -1014 291 114 0 0 chr1 167699277 167699321 -114494343 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 1369 281 74 39 chr1 167699321 167699784 -114493880 + L1ME3 LINE L1 5148 5594 -568 2533 74 0 0 chr1 167699784 167700093 -114493571 + AluSg SINE Alu 1 309 -1 1369 281 74 39 chr1 167700093 167700308 -114493356 + L1ME3 LINE L1 5594 5800 -362 2875 158 2 5 chr1 167700308 167700738 -114492926 + MSTB1 LTR MaLR 4 432 0 1369 281 74 39 chr1 167700738 167700940 -114492724 + L1ME3 LINE L1 5800 6161 -1 24 85 0 0 chr1 167701078 167701137 -114492527 + AT_rich Low_complexity Low_complexity 1 59 0 223 318 50 18 chr1 167701239 167701362 -114492302 + MIR SINE MIR 31 170 -38 3886 215 36 10 chr1 167702025 167703110 -114490554 + L1MB7 LINE L1 5041 6157 -27 1547 198 7 21 chr1 167703207 167703495 -114490169 + AluJo SINE Alu 1 284 -28 352 289 31 0 chr1 167703701 167703798 -114489866 + MIR SINE MIR 54 153 -109 192 326 83 23 chr1 167705231 167705363 -114488301 + MIR SINE MIR 110 249 -13 2224 97 7 13 chr1 167705519 167705817 -114487847 - AluSp SINE Alu -17 296 1 20095 29 5 0 chr1 167706917 167709942 -114483722 + L1PA3 LINE L1 3126 6155 0 201 308 37 37 chr1 167710822 167710929 -114482735 - MIR SINE MIR -108 154 48 2372 97 0 13 chr1 167711288 167711596 -114482068 - AluSp SINE Alu -9 304 1 542 274 7 7 chr1 167711697 167711843 -114481821 + MIR SINE MIR 96 241 -21 1189 124 180 0 chr1 167712021 167712215 -114481449 - MER4A LTR ERV1 0 664 436 2765 104 67 25 chr1 167712224 167712729 -114480935 - MER4A-int LTR ERV1 -6029 569 1 1608 129 8 114 chr1 167712732 167713116 -114480548 - MER4A LTR ERV1 0 664 263 608 78 89 0 chr1 167713116 167713206 -114480458 - MER4A LTR ERV1 -566 98 1 209 319 43 26 chr1 167713301 167713417 -114480247 + MIR SINE MIR 29 146 -116 456 228 0 0 chr1 167713920 167714012 -114479652 - L1MB5 LINE L1 -9 6165 6074 2192 118 0 0 chr1 167716157 167716446 -114477218 + AluSx SINE Alu 1 289 -23 2429 158 13 16 chr1 167717454 167718104 -114475560 - L1M2 LINE L1 -666 5646 5000 2020 130 7 0 chr1 167718108 167718401 -114475263 + AluSx SINE Alu 1 295 -17 711 145 24 8 chr1 167718403 167718527 -114475137 + MER4A LTR ERV1 1 126 -538 1519 138 26 155 chr1 167718546 167719120 -114474544 + MER4A LTR ERV1 102 465 0 2970 94 4 46 chr1 167719589 167719657 -114474007 - L1PB1 LINE L1 -293 5858 5789 387 0 0 0 chr1 167719657 167719700 -114473964 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 2970 94 4 46 chr1 167719700 167719892 -114473772 - L1PB1 LINE L1 -362 5789 5623 2414 78 3 3 chr1 167719892 167720200 -114473464 + AluY SINE Alu 1 308 -3 2970 94 4 46 chr1 167720200 167720397 -114473267 - L1PB1 LINE L1 -528 5623 5419 2569 219 39 11 chr1 167720397 167721035 -114472629 + L1ME1 LINE L1 5412 6067 -99 292 160 60 0 chr1 167721542 167721592 -114472072 - tRNA-Asn-AAC tRNA tRNA -4 73 21 2802 248 41 21 chr1 167721660 167721816 -114471848 - L1MEc LINE L1 -2986 3229 3078 640 162 0 0 chr1 167721816 167721927 -114471737 - L1PB1 LINE L1 -3 6148 6038 2802 248 41 21 chr1 167721927 167723028 -114470636 - L1MEc LINE L1 -3137 3078 1991 1387 207 56 0 chr1 167723034 167723319 -114470345 + AluJo SINE Alu 1 301 -11 522 295 75 36 chr1 167723429 167723788 -114469876 - L1MC4 LINE L1 -481 7561 7189 5073 62 0 0 chr1 167723794 167724405 -114469259 + LTR13 LTR ERVK 2 612 -395 1482 136 4 17 chr1 167724405 167724664 -114469000 - L1P4 LINE L1 -463 5688 5453 345 214 24 0 chr1 167724632 167724716 -114468948 - L1M4 LINE L1 -1200 4946 4861 * 358 255 72 0 chr1 167724984 167725139 -114468525 + L1MEc LINE L1 792 914 -5291 673 312 69 23 chr1 167725220 167725743 -114467921 + L1MEc LINE L1 1090 1636 -4760 2127 131 0 0 chr1 167725747 167726045 -114467619 + AluSg SINE Alu 1 298 -12 1215 261 68 10 chr1 167726064 167726129 -114467535 + L1 LINE L1 4185 4245 -1901 444 19 0 0 chr1 167726129 167726182 -114467482 + (CA)n Simple_repeat Simple_repeat 2 54 0 1215 261 68 10 chr1 167726182 167726603 -114467061 + L1 LINE L1 4245 4699 -1447 1714 174 0 28 chr1 167726632 167726949 -114466715 - AluSx SINE Alu -4 308 1 1131 187 31 0 chr1 167727083 167727308 -114466356 - L1MA9 LINE L1 -32 6280 6049 590 171 185 0 chr1 167727308 167727454 -114466210 - LTR36 LTR ERV1 0 611 439 2331 104 3 0 chr1 167728832 167729140 -114464524 + AluY SINE Alu 1 309 -2 22 0 0 0 chr1 167729141 167729163 -114464501 + AT_rich Low_complexity Low_complexity 1 22 0 207 261 9 36 chr1 167730237 167730348 -114463316 + (TA)n Simple_repeat Simple_repeat 2 109 0 7492 60 29 0 chr1 167731379 167732251 -114461413 + MER11D LTR ERVK 1 897 0 255 356 34 48 chr1 167732383 167732529 -114461135 - MIR SINE MIR -105 157 14 2044 136 3 72 chr1 167733348 167733709 -114459955 - MER1B DNA MER1_type -1 336 1 319 283 53 31 chr1 167733862 167734088 -114459576 - MER46C DNA MER2_type -8 330 100 5725 144 25 18 chr1 167734260 167735222 -114458442 - LTR5 LTR ERVK 0 969 1 278 222 12 25 chr1 167736511 167736592 -114457072 + L1MC4 LINE L1 7956 8035 -7 204 283 0 0 chr1 167736722 167736782 -114456882 + MIR SINE MIR 88 147 -115 333 131 0 0 chr1 167740380 167740441 -114453223 + (GA)n Simple_repeat Simple_repeat 1 61 0 201 227 0 0 chr1 167741931 167741975 -114451689 + GA-rich Low_complexity Low_complexity 1 44 0 1850 129 0 4 chr1 167744881 167745137 -114448527 + AluSx SINE Alu 34 288 -24 2517 220 3 27 chr1 167745695 167746323 -114447341 - L1P5 LINE L1 -894 5252 4640 1291 65 0 40 chr1 167746322 167746522 -114447142 + L1P5 LINE L1 5265 5456 -695 * 1840 134 40 17 chr1 167746523 167746821 -114446843 + LTR8 LTR ERV1 387 691 0 422 279 25 0 chr1 167747359 167747481 -114446183 + Charlie4 DNA MER1_type 1834 1958 -3 2071 99 55 0 chr1 167747487 167747780 -114445884 + AluSx SINE Alu 1 309 -3 725 161 183 0 chr1 167748182 167748319 -114445345 + U1 snRNA snRNA 1 162 -3 258 200 124 29 chr1 167748842 167748947 -114444717 + REP3 LTR ERV 6 120 -442 623 249 63 51 chr1 167748957 167749194 -114444470 + L1ME2 LINE L1 5801 6040 -124 231 222 0 0 chr1 167749926 167749980 -114443684 + A-rich Low_complexity Low_complexity 1 54 0 280 263 105 0 chr1 167750979 167751093 -114442571 + HAL1b LINE L1 1032 1157 -191 242 191 16 16 chr1 167751093 167751156 -114442508 + (TA)n Simple_repeat Simple_repeat 1 63 0 820 233 38 98 chr1 167751158 167751573 -114442091 - MER39 LTR ERV1 -67 636 56 406 256 0 18 chr1 167753022 167753186 -114440478 - U1 snRNA snRNA -1 164 4 473 153 0 0 chr1 167754235 167754307 -114439357 - tRNA-Glu-GAG tRNA tRNA -3 72 1 291 248 98 68 chr1 167755027 167755160 -114438504 - MER20 DNA MER1_type -2 217 81 1492 176 33 61 chr1 167756748 167757111 -114436553 - MLT1A1 LTR MaLR 0 365 13 402 271 28 28 chr1 167757295 167757439 -114436225 + HAL1 LINE L1 416 559 -1948 297 307 25 12 chr1 167757499 167757662 -114436002 + L1ME2 LINE L1 4696 4860 -1286 892 185 158 0 chr1 167757711 167757895 -114435769 - AluJb SINE Alu -99 213 1 2138 235 52 52 chr1 167757909 167759011 -114434653 + L1ME2 LINE L1 4873 5982 -182 219 258 30 0 chr1 167759307 167759373 -114434291 + GA-rich Low_complexity Low_complexity 2 69 0 663 0 0 0 chr1 167759640 167759712 -114433952 - tRNA-His-CAC tRNA tRNA -3 72 1 816 178 28 39 chr1 167760749 167760929 -114432735 - MER58 DNA MER1_type 0 2420 2243 396 245 43 14 chr1 167761380 167761519 -114432145 + L2 LINE L2 2352 2494 -820 1222 198 55 92 chr1 167761915 167762319 -114431345 + MLT1B LTR MaLR 1 389 -1 44337 46 2 3 chr1 167762874 167769027 -114424637 - L1PA4 LINE L1 -3 6152 7 818 104 0 0 chr1 167769132 167769238 -114424426 + AluY SINE Alu 195 300 -11 1008 308 42 7 chr1 167769458 167769864 -114423800 + L1MCc LINE L1 19 438 -5985 201 108 0 0 chr1 167769903 167769940 -114423724 + (T)n Simple_repeat Simple_repeat 1 37 0 220 185 15 15 chr1 167769949 167770014 -114423650 + GA-rich Low_complexity Low_complexity 2 66 0 239 0 0 31 chr1 167770045 167770077 -114423587 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 9824 59 5 105 chr1 167770149 167771625 -114422039 - SVA Other Other 0 1386 58 706 48 19 10 chr1 167771629 167771732 -114421932 + (GGGAGA)n Simple_repeat Simple_repeat 4 107 0 293 370 75 41 chr1 167771750 167771896 -114421768 + L1MCc LINE L1 447 597 -5826 6700 104 18 61 chr1 167772098 167772498 -114421166 + LOR1-int LTR ERV1 3008 3424 -4696 1825 168 0 20 chr1 167772498 167772802 -114420862 + AluSx SINE Alu 1 298 -14 6700 104 18 61 chr1 167772802 167773503 -114420161 + LOR1-int LTR ERV1 3424 4062 -4058 578 49 25 0 chr1 167773518 167773599 -114420065 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1284 227 7 3 chr1 167773705 167773991 -114419673 + AluJo SINE Alu 14 300 -12 1141 245 104 44 chr1 167774060 167774478 -114419186 - L1 LINE L1 -1441 4705 4252 467 82 14 0 chr1 167774478 167774551 -114419113 + (TG)n Simple_repeat Simple_repeat 2 75 0 1141 245 104 44 chr1 167774551 167774631 -114419033 - L1 LINE L1 -1894 4252 4178 364 265 154 52 chr1 167774613 167775386 -114418278 - L1MEc LINE L1 -4729 1667 816 * 870 102 0 0 chr1 167775386 167775504 -114418160 - AluSp/q SINE Alu -6 307 190 718 255 68 21 chr1 167775648 167775883 -114417781 - MIR SINE MIR -1 261 16 221 324 63 9 chr1 167776140 167776251 -114417413 - L2 LINE L2 -4 3268 3152 180 0 0 0 chr1 167776689 167776709 -114416955 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 753 136 0 0 chr1 167776715 167776825 -114416839 - FLAM_C SINE Alu -32 111 2 1573 239 42 31 chr1 167778201 167778679 -114414985 - L1MC4 LINE L1 0 8042 7560 28 0 0 0 chr1 167779046 167779074 -114414590 + AT_rich Low_complexity Low_complexity 1 28 0 210 294 0 34 chr1 167782135 167782254 -114411410 + C-rich Low_complexity Low_complexity 4 118 0 473 156 138 9 chr1 167782281 167782390 -114411274 - L1MC4 LINE L1 -472 7570 7448 600 73 0 0 chr1 167782390 167782472 -114411192 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 1390 143 0 14 chr1 167782489 167782705 -114410959 - AluJb SINE Alu -99 213 1 436 210 42 34 chr1 167782738 167782858 -114410806 - L1MC4 LINE L1 -477 7331 7212 2712 248 80 67 chr1 167782894 167782907 -114410757 - L1MC4a LINE L1 -703 7105 7094 2179 97 50 3 chr1 167782907 167783205 -114410459 + AluSx SINE Alu 1 312 0 2712 248 80 67 chr1 167783205 167784605 -114409059 - L1MC4a LINE L1 -714 7094 5673 2291 99 0 0 chr1 167785068 167785351 -114408313 + AluSq SINE Alu 1 283 -30 207 0 0 0 chr1 167785355 167785378 -114408286 + (TAA)n Simple_repeat Simple_repeat 3 25 0 276 330 73 39 chr1 167785483 167785689 -114407975 - MIR SINE MIR -4 258 46 369 209 70 149 chr1 167786500 167786701 -114406963 + MIR SINE MIR 1 185 -77 * 871 297 124 4 chr1 167786698 167787149 -114406515 - L2 LINE L2 0 3313 2809 198 271 118 0 chr1 167787150 167787235 -114406429 + MIR SINE MIR 167 261 -1 2325 89 7 0 chr1 167787240 167787531 -114406133 - AluSg SINE Alu -17 293 1 783 165 43 37 chr1 167787622 167787810 -114405854 - L1MC5 LINE L1 -659 7302 7114 738 178 0 31 chr1 167788623 167788752 -114404912 - AluSq/x SINE Alu -180 133 9 1078 141 0 0 chr1 167788753 167788902 -114404762 - FRAM SINE Alu -28 148 1 335 197 0 0 chr1 167789469 167789535 -114404129 + L2 LINE L2 3247 3312 -1 374 299 66 0 chr1 167790165 167790302 -114403362 + MIR SINE MIR 111 256 -6 1561 100 0 0 chr1 167790358 167790558 -114403106 + AluSg/x SINE Alu 105 304 -6 189 0 0 0 chr1 167790785 167790806 -114402858 + (TTA)n Simple_repeat Simple_repeat 2 22 0 690 106 0 0 chr1 167796186 167796299 -114397365 + AluSp/q SINE Alu 198 310 0 22 35 0 0 chr1 167796573 167796602 -114397062 + AT_rich Low_complexity Low_complexity 1 29 0 789 179 8 15 chr1 167797886 167798020 -114395644 + FLAM_A SINE Alu 1 133 0 646 305 93 0 chr1 167798422 167798648 -114395016 - MIR SINE MIR -13 249 3 384 265 23 15 chr1 167801042 167801174 -114392490 + MIR3 SINE MIR 44 176 -32 407 266 92 40 chr1 167802892 167803065 -114390599 - MER5A DNA MER1_type -1 188 7 21 0 0 0 chr1 167803148 167803169 -114390495 + AT_rich Low_complexity Low_complexity 1 21 0 3571 264 66 32 chr1 167803273 167804689 -114388975 + L1M1 LINE L1 18 2581 -4984 * 24153 71 3 2 chr1 167804688 167808636 -114385028 - L1PA6 LINE L1 -3 6151 2202 13028 53 4 4 chr1 167808662 167810995 -114382669 - L1PA5 LINE L1 -7 6147 3811 345 271 71 29 chr1 167814945 167815085 -114378579 + MIR SINE MIR 100 245 -17 2230 59 4 4 chr1 167815143 167815413 -114378251 + AluY SINE Alu 2 271 -40 221 389 14 14 chr1 167815773 167815912 -114377752 + MIR3 SINE MIR 33 171 -37 1028 206 9 37 chr1 167816124 167816338 -114377326 - MER3 DNA MER1_type -1 208 1 726 198 0 8 chr1 167819560 167819681 -114373983 + FLAM_A SINE Alu 10 129 -13 4512 154 45 36 chr1 167819757 167820650 -114373014 - L1MA7 LINE L1 -2 6289 5389 377 269 37 28 chr1 167821385 167821493 -114372171 - MIR3 SINE MIR -17 191 83 2280 100 3 0 chr1 167822285 167822586 -114371078 + AluSx SINE Alu 1 302 -10 242 286 11 22 chr1 167822739 167822830 -114370834 + MIR SINE MIR 152 241 -21 362 211 42 42 chr1 167823830 167823925 -114369739 - L1MB5 LINE L1 -9 6165 6071 1771 164 0 0 chr1 167827020 167827289 -114366375 - AluSx SINE Alu -6 306 38 16400 82 5 37 chr1 167828007 167829394 -114364270 - L1P LINE L1 -2920 3226 1796 4842 96 8 5 chr1 167829394 167830053 -114363611 + L1PA4 LINE L1 5494 6154 -1 258 32 0 0 chr1 167830053 167830084 -114363580 + (TA)n Simple_repeat Simple_repeat 1 31 0 16400 82 5 37 chr1 167830084 167831125 -114362539 - L1P LINE L1 -4348 1798 875 387 0 0 0 chr1 167833342 167833385 -114360279 + (TG)n Simple_repeat Simple_repeat 2 44 0 193 128 43 0 chr1 167834888 167834935 -114358729 + CT-rich Low_complexity Low_complexity 1 49 0 231 36 0 0 chr1 167836434 167836462 -114357202 + (TC)n Simple_repeat Simple_repeat 1 28 0 387 83 0 0 chr1 167836463 167836523 -114357141 + (TG)n Simple_repeat Simple_repeat 2 61 0 287 150 38 12 chr1 167837607 167837687 -114355977 + GA-rich Low_complexity Low_complexity 2 83 0 399 68 0 0 chr1 167838093 167838152 -114355512 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 241 352 11 34 chr1 167839306 167839482 -114354182 + L1MC4 LINE L1 7460 7631 -411 596 310 51 40 chr1 167839483 167839931 -114353733 - L1MC4 LINE L1 -401 7641 7189 288 70 0 0 chr1 167840293 167840336 -114353328 + (TG)n Simple_repeat Simple_repeat 1 43 0 240 268 31 31 chr1 167841433 167841530 -114352134 - L1MC5 LINE L1 -50 7911 7815 243 188 72 0 chr1 167841589 167841658 -114352006 - MLT2D LTR ERVL -75 440 367 600 281 21 10 chr1 167841683 167841875 -114351789 - MLT2D LTR ERVL -220 194 1 1028 249 37 42 chr1 167841875 167842276 -114351388 - L1M4 LINE L1 -889 5257 4859 1644 146 0 26 chr1 167842576 167842843 -114350821 + AluSq SINE Alu 50 309 -4 367 238 210 47 chr1 167842843 167843162 -114350502 + L1MEc LINE L1 983 1353 -5210 394 290 89 26 chr1 167843204 167843604 -114350060 + L1MEc LINE L1 1265 1658 -4726 * 1073 233 86 88 chr1 167843596 167843698 -114349966 + L1M4 LINE L1 4190 4291 -1855 297 51 0 0 chr1 167843698 167843737 -114349927 + (CA)n Simple_repeat Simple_repeat 1 39 0 1073 233 86 88 chr1 167843737 167844149 -114349515 + L1M4 LINE L1 4291 4703 -1443 1256 221 11 4 chr1 167844225 167844506 -114349158 - AluJo SINE Alu -9 303 21 2352 74 0 24 chr1 167844659 167844957 -114348707 + AluY SINE Alu 1 291 -20 191 88 29 0 chr1 167844985 167845019 -114348645 + (TA)n Simple_repeat Simple_repeat 2 36 0 234 222 0 0 chr1 167845023 167845086 -114348578 - L1MA9 LINE L1 -36 6276 6214 242 227 143 25 chr1 167846005 167846124 -114347540 + MIR SINE MIR 104 236 -26 246 370 37 5 chr1 167846224 167846413 -114347251 - L1MC/D LINE L1 -2040 5768 5574 245 257 228 0 chr1 167846790 167846992 -114346672 - HAL1 LINE L1 -155 2352 2105 220 271 0 29 chr1 167848234 167848304 -114345360 + CT-rich Low_complexity Low_complexity 2 69 0 492 125 0 0 chr1 167849216 167849288 -114344376 - tRNA-Gln-CAG tRNA tRNA -3 72 1 2066 164 44 3 chr1 167850078 167850444 -114343220 - LOR1b LTR ERV1 -2 459 79 497 132 13 0 chr1 167850445 167850521 -114343143 + AluJb SINE Alu 57 133 -179 26440 105 14 14 chr1 167850538 167854476 -114339188 + L1P LINE L1 11 3946 -2200 2084 137 0 13 chr1 167854590 167854903 -114338761 + AluSx SINE Alu 3 311 -1 439 326 6 23 chr1 167855194 167855369 -114338295 - L1ME LINE L1 -411 5751 5580 362 250 65 0 chr1 167855375 167855483 -114338181 - L1ME LINE L1 -638 5528 5414 * 2081 260 138 36 chr1 167855478 167856515 -114337149 - L1ME LINE L1 -2366 3780 2558 1977 128 17 10 chr1 167856515 167856804 -114336860 - AluSx SINE Alu -21 291 1 2081 260 138 36 chr1 167856804 167857186 -114336478 - L1ME LINE L1 -3588 2558 2216 932 240 5 5 chr1 167858235 167858439 -114335225 + AluJb SINE Alu 1 204 -108 2259 97 0 31 chr1 167858518 167858839 -114334825 + AluY SINE Alu 1 311 0 1875 147 6 6 chr1 167858853 167859165 -114334499 + AluSx SINE Alu 1 312 0 1849 158 13 0 chr1 167860243 167860547 -114333117 + AluSg SINE Alu 1 308 -2 386 286 7 14 chr1 167860709 167860856 -114332808 + MIR SINE MIR 96 241 -21 379 253 0 0 chr1 167861802 167861897 -114331767 - L1MB5 LINE L1 -9 6165 6071 1683 172 10 0 chr1 167862934 167863230 -114330434 - AluSg SINE Alu -11 299 1 886 273 128 33 chr1 167864553 167864588 -114329076 - L1ME2 LINE L1 -242 5922 5892 2502 45 3 45 chr1 167864588 167864901 -114328763 - AluY SINE Alu -11 300 1 886 273 128 33 chr1 167864901 167865833 -114327831 - L1ME2 LINE L1 -272 5892 4862 1495 90 19 19 chr1 167865862 167866074 -114327590 + L1PA6 LINE L1 5909 6120 -34 606 191 22 11 chr1 167866079 167866257 -114327407 + (TA)n Simple_repeat Simple_repeat 1 180 0 985 281 107 8 chr1 167867083 167867567 -114326097 - L1ME2 LINE L1 -1286 4860 4329 802 284 113 30 chr1 167867592 167868018 -114325646 - L1ME2 LINE L1 -13 6151 5691 3141 89 14 18 chr1 167868020 167868458 -114325206 + PABL_A LTR ERV1 2 437 -223 22 0 0 0 chr1 167868737 167868759 -114324905 + AT_rich Low_complexity Low_complexity 1 22 0 549 311 141 41 chr1 167868804 167869468 -114324196 + L1M4 LINE L1 2805 3578 -2568 1826 148 3 48 chr1 167869468 167869778 -114323886 - AluSx SINE Alu -16 296 1 549 311 141 41 chr1 167869778 167869983 -114323681 + L1M4 LINE L1 3578 3761 -2385 1784 174 3 20 chr1 167870006 167870304 -114323360 + AluJo SINE Alu 1 293 -19 2027 186 36 75 chr1 167870305 167870838 -114322826 - LTR40a LTR ERVL -7 512 1 722 309 90 63 chr1 167870895 167871726 -114321938 + L1M4 LINE L1 3906 4759 -1387 225 305 61 12 chr1 167871941 167872105 -114321559 + L1M4 LINE L1 5015 5186 -960 24 0 0 0 chr1 167872124 167872148 -114321516 + AT_rich Low_complexity Low_complexity 1 24 0 390 229 178 0 chr1 167872324 167872442 -114321222 + MIR SINE MIR 116 254 -8 2417 87 3 0 chr1 167872597 167872907 -114320757 + AluSp SINE Alu 1 311 -2 1176 183 0 0 chr1 167873422 167873613 -114320051 - AluSx SINE Alu -117 195 5 355 247 89 14 chr1 167873702 167873848 -114319816 + L1ME4a LINE L1 5964 6120 -1 22 94 0 0 chr1 167874045 167874109 -114319555 + AT_rich Low_complexity Low_complexity 1 64 0 2483 39 0 3 chr1 167874464 167874774 -114318890 + AluY SINE Alu 1 309 0 2374 97 0 3 chr1 167874787 167875096 -114318568 + AluSg SINE Alu 1 308 -2 470 311 83 22 chr1 167876375 167876652 -114317012 - LTR16C LTR ERVL -12 479 186 5526 138 22 53 chr1 167878058 167879058 -114314606 + LTR5 LTR ERVK 1 969 0 1295 116 20 30 chr1 167879058 167879257 -114314407 + MER4B LTR ERV1 408 604 -6 1125 291 69 38 chr1 167879268 167880118 -114313546 + L1M4 LINE L1 4018 4894 -1252 385 146 0 85 chr1 167880335 167880417 -114313247 + AluJ/FRAM SINE Alu 227 301 -1 437 285 70 49 chr1 167880502 167880564 -114313100 + L1M4 LINE L1 3374 3433 -2713 2103 95 4 0 chr1 167880564 167880827 -114312837 + AluSp SINE Alu 35 298 -15 437 285 70 49 chr1 167880827 167881108 -114312556 + L1M4 LINE L1 3433 3724 -2422 2113 120 7 0 chr1 167881162 167881453 -114312211 + AluSx SINE Alu 1 293 -19 1350 227 46 96 chr1 167881458 167881737 -114311927 + L1M4 LINE L1 4272 4563 -1583 2081 194 37 77 chr1 167881737 167881907 -114311757 + MLT1F LTR MaLR 3 178 -364 2230 117 0 0 chr1 167881907 167882205 -114311459 - AluSg SINE Alu -12 298 1 2081 194 37 77 chr1 167882205 167882596 -114311068 + MLT1F LTR MaLR 178 542 0 1350 227 46 96 chr1 167882596 167883053 -114310611 + L1M4 LINE L1 4563 4971 -1175 234 264 55 11 chr1 167883982 167884073 -114309591 + L1M4 LINE L1 2117 2211 -3935 287 150 38 12 chr1 167884978 167885058 -114308606 + GA-rich Low_complexity Low_complexity 2 83 0 378 85 0 0 chr1 167885464 167885523 -114308141 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 221 146 21 0 chr1 167887019 167887067 -114306597 + CT-rich Low_complexity Low_complexity 1 49 0 221 146 21 0 chr1 167888559 167888607 -114305057 + CT-rich Low_complexity Low_complexity 1 49 0 261 83 0 0 chr1 167888867 167888903 -114304761 + (A)n Simple_repeat Simple_repeat 1 36 0 1837 165 7 10 chr1 167888957 167889266 -114304398 - AluJb SINE Alu -4 308 1 710 199 23 0 chr1 167889266 167889397 -114304267 - AluJo SINE Alu -177 135 2 26 30 0 0 chr1 167889405 167889438 -114304226 + AT_rich Low_complexity Low_complexity 1 33 0 403 330 17 0 chr1 167889529 167889644 -114304020 + L2 LINE L2 3156 3272 0 408 259 36 9 chr1 167889721 167889833 -114303831 + MLT1I LTR MaLR 277 391 -18 1090 130 23 23 chr1 167890052 167890229 -114303435 - AluJo SINE Alu -52 260 84 431 298 43 0 chr1 167890283 167890424 -114303240 + L2 LINE L2 2371 2517 -797 189 250 0 0 chr1 167890780 167890828 -114302836 + L2 LINE L2 3265 3312 -1 561 185 0 25 chr1 167891898 167892055 -114301609 + CT-rich Low_complexity Low_complexity 4 156 0 2222 110 0 19 chr1 167892199 167892509 -114301155 - AluSg SINE Alu -6 304 1 657 224 140 42 chr1 167892509 167892598 -114301066 + L1ME2 LINE L1 5080 5159 -1003 1751 175 3 7 chr1 167892598 167892895 -114300769 + AluJb SINE Alu 1 296 -16 657 224 140 42 chr1 167892895 167893346 -114300318 + L1ME2 LINE L1 5159 5651 -511 228 133 283 17 chr1 167893351 167893411 -114300253 + L1ME3A LINE L1 6038 6113 -57 623 153 0 2 chr1 167893411 167893658 -114300006 - AluJb SINE Alu -15 297 3 1953 88 4 8 chr1 167893984 167894246 -114299418 - AluY SINE Alu -18 293 33 668 268 90 49 chr1 167896145 167896640 -114297024 + L2 LINE L2 2474 2982 -290 1826 167 16 16 chr1 167897116 167897428 -114296236 + AluJb SINE Alu 1 312 0 736 222 66 0 chr1 167897496 167897699 -114295965 + L1ME2 LINE L1 5855 6074 -88 31 44 0 0 chr1 167897727 167897772 -114295892 + AT_rich Low_complexity Low_complexity 1 45 0 371 369 23 14 chr1 167897773 167897990 -114295674 - MIR SINE MIR -2 260 42 2363 102 3 0 chr1 167898176 167898479 -114295185 + AluSx SINE Alu 1 304 -8 571 229 0 0 chr1 167898480 167898589 -114295075 - FLAM_A SINE Alu -30 112 4 3521 98 93 35 chr1 167899180 167899801 -114293863 + MER51D LTR ERV1 1 657 0 390 153 0 0 chr1 167899878 167899937 -114293727 - tRNA-Gly-GGG tRNA tRNA -15 59 1 286 217 14 14 chr1 167900769 167900838 -114292826 + tRNA-Gly-GGG tRNA tRNA 3 71 -3 432 200 0 0 chr1 167901771 167901846 -114291818 - MER116 DNA Mariner -5 75 1 895 266 69 18 chr1 167903517 167903838 -114289826 + MLT1I LTR MaLR 67 391 -18 3871 260 112 28 chr1 167904187 167906098 -114287566 + L2 LINE L2 1234 3313 0 408 276 63 40 chr1 167906172 167906346 -114287318 - MIR3 SINE MIR -9 199 22 2283 222 39 12 chr1 167907237 167907755 -114285909 + MLT1H1 LTR MaLR 24 555 0 400 260 91 37 chr1 167907755 167908051 -114285613 + MLT1H1-int LTR MaLR 1 443 -928 267 247 76 143 chr1 167908251 167908579 -114285085 + MLT1H1-int LTR MaLR 1036 1341 -30 2228 230 86 6 chr1 167908605 167909119 -114284545 + MLT1H1 LTR MaLR 1 555 0 342 253 63 0 chr1 167910685 167910780 -114282884 - MIR SINE MIR -78 184 84 268 250 189 7 chr1 167910987 167911135 -114282529 + MIR SINE MIR 86 260 -2 * 381 266 223 0 chr1 167911129 167911313 -114282351 - MIR SINE MIR -15 247 23 229 230 10 130 chr1 167911593 167911693 -114281971 + MIR SINE MIR 24 111 -97 192 324 69 20 chr1 167911863 167911965 -114281699 - MER5A DNA MER1_type -35 154 48 2656 45 0 0 chr1 167912216 167912526 -114281138 + AluY SINE Alu 2 311 0 256 99 84 56 chr1 167913886 167913957 -114279707 + L1M2c LINE L1 2169 2241 -4548 381 223 92 76 chr1 167914221 167914405 -114279259 + MIR3 SINE MIR 16 202 -6 7362 104 8 7 chr1 167914740 167915910 -114277754 + L1MA1 LINE L1 5127 6298 -4 34 93 0 0 chr1 167915912 167916009 -114277655 + AT_rich Low_complexity Low_complexity 1 97 0 22 0 0 0 chr1 167916504 167916526 -114277138 + AT_rich Low_complexity Low_complexity 1 22 0 372 295 108 48 chr1 167916572 167916925 -114276739 + L1M4 LINE L1 2805 3178 -2968 186 118 0 0 chr1 167916957 167916991 -114276673 + (GA)n Simple_repeat Simple_repeat 2 35 0 318 154 0 0 chr1 167917236 167917288 -114276376 - Alu SINE Alu -6 296 245 204 40 0 0 chr1 167917388 167917413 -114276251 + (TCCC)n Simple_repeat Simple_repeat 2 26 0 206 227 0 15 chr1 167917414 167917480 -114276184 + CT-rich Low_complexity Low_complexity 3 67 0 3366 225 43 21 chr1 167917922 167919420 -114274244 - L1MC2 LINE L1 -5 6619 4992 917 281 86 16 chr1 167919420 167919805 -114273859 - L1MC2 LINE L1 -5996 430 19 326 265 49 37 chr1 167919813 167919975 -114273689 - L1MB8 LINE L1 -25 6153 5990 1848 160 7 3 chr1 167920302 167920602 -114273062 - AluSq SINE Alu -4 309 9 6795 109 6 25 chr1 167920613 167921601 -114272063 + LTR5 LTR ERVK 1 969 0 771 270 137 29 chr1 167921842 167922298 -114271366 - MLT1E2 LTR MaLR 0 654 111 606 249 32 113 chr1 167922531 167922876 -114270788 - MLT1E2-int LTR MaLR -98 1273 957 1272 161 26 130 chr1 167922919 167923341 -114270323 - L1ME2 LINE L1 -263 5901 5524 222 229 66 16 chr1 167924300 167924361 -114269303 - MIR3 SINE MIR -7 201 138 557 229 105 51 chr1 167924962 167925226 -114268438 + LTR33 LTR ERVL 29 275 -248 507 48 0 0 chr1 167925742 167925805 -114267859 - AluY SINE Alu -247 64 2 22 35 0 0 chr1 167925808 167925837 -114267827 + AT_rich Low_complexity Low_complexity 1 29 0 1995 271 27 44 chr1 167925837 167926407 -114267257 + L1MD2 LINE L1 3863 4415 -1731 2237 123 3 0 chr1 167926407 167926715 -114266949 + AluY SINE Alu 1 309 -2 1995 271 27 44 chr1 167926715 167927000 -114266664 + L1MD2 LINE L1 4415 4703 -1443 17960 33 1 0 chr1 167927108 167929258 -114264406 + L1P LINE L1 1560 3712 -2434 1131 268 109 30 chr1 167930091 167930467 -114263197 + L1MD2 LINE L1 4779 5124 -1235 2197 125 0 13 chr1 167930467 167930770 -114262894 + AluSx SINE Alu 1 299 -13 1131 268 109 30 chr1 167930770 167931345 -114262319 + L1MD2 LINE L1 5124 5854 -505 1902 143 31 14 chr1 167931396 167931690 -114261974 - AluJb SINE Alu -13 299 1 664 234 155 9 chr1 167932696 167932922 -114260742 - MIR SINE MIR 0 262 4 955 202 12 0 chr1 167932951 167933119 -114260545 + Charlie1 DNA MER1_type 2 171 -2590 2136 123 53 36 chr1 167933120 167933478 -114260186 + THE1B LTR MaLR 1 364 0 6193 98 17 6 chr1 167933478 167934339 -114259325 + THE1B-int LTR MaLR 1 871 -709 314 195 133 94 chr1 167934422 167934470 -114259194 + MIR SINE MIR 113 158 -104 1873 167 10 7 chr1 167934470 167934776 -114258888 + AluSx SINE Alu 1 307 -5 314 195 133 94 chr1 167934776 167934855 -114258809 + MIR SINE MIR 158 245 -17 708 125 28 23 chr1 167936078 167936254 -114257410 + (CAGC)n Simple_repeat Simple_repeat 4 180 0 254 196 49 18 chr1 167936237 167936400 -114257264 + (CCAA)n Simple_repeat Simple_repeat 4 171 0 * 296 286 0 48 chr1 167936501 167936585 -114257079 + L3 LINE CR1 1397 1476 -101 2033 96 0 105 chr1 167936614 167936948 -114256716 - AluSx SINE Alu -13 299 1 259 284 40 0 chr1 167936974 167937048 -114256616 - L2 LINE L2 0 3272 3196 1326 238 60 44 chr1 167937053 167937507 -114256157 + MLT1C LTR MaLR 7 467 0 342 293 79 84 chr1 167937672 167938088 -114255576 - L2 LINE L2 -361 2953 2539 2323 75 0 3 chr1 167938088 167938370 -114255294 + AluSx SINE Alu 18 298 -14 342 293 79 84 chr1 167938370 167938551 -114255113 - L2 LINE L2 -775 2539 2359 300 158 0 0 chr1 167938580 167938637 -114255027 + (TTCA)n Simple_repeat Simple_repeat 2 58 0 297 0 0 0 chr1 167938783 167938816 -114254848 + (TG)n Simple_repeat Simple_repeat 2 34 0 1927 133 0 0 chr1 167939112 167939413 -114254251 - L1PA13 LINE L1 -1 6162 5862 2419 100 0 0 chr1 167939433 167939743 -114253921 - AluSg SINE Alu 0 310 1 2691 42 0 0 chr1 167939843 167940149 -114253515 - AluY SINE Alu -5 306 1 431 230 0 23 chr1 167940151 167940238 -114253426 + MER8 DNA MER2_type 155 239 0 321 235 142 77 chr1 167940240 167940423 -114253241 - L1MEc LINE L1 -4813 2012 1818 1955 120 7 33 chr1 167940499 167940800 -114252864 + AluSx SINE Alu 3 295 -17 230 279 59 0 chr1 167940803 167940871 -114252793 - MIR SINE MIR -84 124 53 590 238 42 26 chr1 167940875 167940963 -114252701 - L1MEc LINE L1 -4879 1663 1578 198 0 0 0 chr1 167940963 167940985 -114252679 + (TA)n Simple_repeat Simple_repeat 2 23 0 590 238 42 26 chr1 167940985 167941089 -114252575 - L1MEc LINE L1 -4964 1578 1468 509 209 0 0 chr1 167941096 167941187 -114252477 - AluJ/FRAM SINE Alu -2 310 220 661 219 0 0 chr1 167941605 167941719 -114251945 + MER81 DNA DNA 1 114 0 196 231 0 39 chr1 167941719 167941771 -114251893 + MIR3 SINE MIR 152 201 -7 392 260 107 13 chr1 167942398 167942548 -114251116 + MIR SINE MIR 99 262 0 2431 83 0 3 chr1 167942628 167942928 -114250736 - AluSq SINE Alu -14 299 1 248 259 167 19 chr1 167943370 167943478 -114250186 - MIR SINE MIR -39 223 100 2015 136 36 0 chr1 167943488 167943789 -114249875 + AluJb SINE Alu 1 312 0 526 322 203 21 chr1 167944305 167945335 -114248329 + L2 LINE L2 1225 2441 -873 282 226 152 103 chr1 167947266 167947470 -114246194 - HAL1 LINE L1 -2292 215 2 442 276 60 25 chr1 167947616 167947815 -114245849 - L1MC4 LINE L1 -139 7903 7698 2484 73 10 0 chr1 167947815 167948118 -114245546 - AluY SINE Alu -5 306 1 9369 155 8 13 chr1 167948216 167948887 -114244777 - L1PB1 LINE L1 0 6151 5478 194 0 39 0 chr1 167948887 167948913 -114244751 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 9369 155 8 13 chr1 167948913 167950858 -114242806 - L1PB1 LINE L1 -673 5478 3551 485 335 14 31 chr1 167951127 167951420 -114242244 + L1MEc LINE L1 821 1108 -6030 663 221 52 39 chr1 167951909 167952140 -114241524 + L1MEc LINE L1 1327 1641 -5306 7690 127 37 23 chr1 167952205 167953462 -114240202 - Tigger1 DNA MER2_type 0 2418 1144 1240 261 45 65 chr1 167953479 167954141 -114239523 + L1MEc LINE L1 2082 2730 -4408 2425 96 3 0 chr1 167954266 167954578 -114239086 + AluSq SINE Alu 1 313 0 378 267 107 13 chr1 167954668 167954818 -114238846 - MIR SINE MIR 0 262 99 196 231 0 39 chr1 167955445 167955497 -114238167 - MIR3 SINE MIR -7 201 152 661 219 0 0 chr1 167955497 167955611 -114238053 - MER81 DNA DNA 0 114 1 515 206 0 0 chr1 167956029 167956121 -114237543 + AluJ/FRAM SINE Alu 220 311 -1 548 239 15 58 chr1 167956128 167956244 -114237420 + L1M4 LINE L1 1468 1573 -4969 252 0 0 0 chr1 167956244 167956272 -114237392 + (TA)n Simple_repeat Simple_repeat 2 29 0 548 239 15 58 chr1 167956272 167956360 -114237304 + L1M4 LINE L1 1573 1663 -4879 230 279 59 0 chr1 167956364 167956432 -114237232 + MIR SINE MIR 53 124 -84 1949 119 7 36 chr1 167956435 167956737 -114236927 - AluSx SINE Alu -17 295 3 305 240 142 77 chr1 167956813 167956996 -114236668 + L1M4 LINE L1 1818 2012 -4813 443 239 0 22 chr1 167956998 167957090 -114236574 - MER8 DNA MER2_type 0 239 150 2438 94 0 0 chr1 167957183 167957491 -114236173 + AluSg SINE Alu 1 308 -2 1932 130 0 0 chr1 167957508 167957809 -114235855 + L1PA13 LINE L1 5862 6162 -1 423 0 0 0 chr1 167958105 167958152 -114235512 + (CA)n Simple_repeat Simple_repeat 2 48 0 372 138 0 0 chr1 167958298 167958363 -114235301 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 330 299 75 80 chr1 167958392 167958573 -114235091 + L2 LINE L2 2359 2539 -775 2347 71 0 3 chr1 167958573 167958856 -114234808 - AluSx SINE Alu -13 299 18 330 299 75 80 chr1 167958856 167959272 -114234392 + L2 LINE L2 2539 2953 -361 271 330 45 0 chr1 167959396 167959437 -114234227 + L2 LINE L2 3156 3194 -78 1234 238 58 50 chr1 167959437 167959900 -114233764 - MLT1C LTR MaLR 0 467 1 271 330 45 0 chr1 167959900 167959970 -114233694 + L2 LINE L2 3194 3272 0 2039 102 0 84 chr1 167959996 167960319 -114233345 + AluSx SINE Alu 1 296 -16 554 269 50 63 chr1 167960348 167960586 -114233078 - L3 LINE CR1 -101 1476 1242 2081 144 0 3 chr1 167960868 167961181 -114232483 - AluJo SINE Alu 0 312 1 725 132 21 28 chr1 167961868 167962012 -114231652 - L1P LINE L1 -806 5340 5198 2018 144 0 10 chr1 167962416 167962708 -114230956 + AluJb SINE Alu 5 293 -19 2028 193 52 32 chr1 167963361 167963823 -114229841 - MLT1D LTR MaLR 0 505 35 571 244 52 76 chr1 167963975 167964225 -114229439 + L1ME4a LINE L1 5683 5926 -195 1849 151 6 28 chr1 167965243 167965560 -114228104 + AluJb SINE Alu 1 310 -2 2463 86 0 0 chr1 167967579 167967883 -114225781 + AluSx SINE Alu 1 304 -8 4094 223 121 34 chr1 167969803 167971085 -114222579 + L1MDa LINE L1 18 1411 -5129 2375 98 0 0 chr1 167971085 167971390 -114222274 + AluY SINE Alu 1 305 -6 2289 165 82 52 chr1 167971423 167971908 -114221756 - MLT1D LTR MaLR 0 505 6 3230 161 66 34 chr1 167971973 167972701 -114220963 + L1MDa LINE L1 1467 2217 -4323 238 99 30 77 chr1 167972697 167972761 -114220903 + L1ME LINE L1 1386 1452 -5078 * 279 202 87 6 chr1 167972933 167973009 -114220655 - MLT1J LTR MaLR 0 511 446 228 213 0 0 chr1 167973073 167973120 -114220544 - MLT1L LTR MaLR -221 394 348 317 320 44 55 chr1 167973369 167973641 -114220023 + L2 LINE L2 723 991 -2323 227 255 0 0 chr1 167973667 167973718 -114219946 + L2 LINE L2 3245 3295 -18 1702 253 38 2 chr1 167973918 167974317 -114219347 - MER70B LTR ERVL -143 435 23 504 0 0 0 chr1 167974332 167974388 -114219276 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 687 300 48 4 chr1 167974388 167974618 -114219046 - MIR SINE MIR -21 241 2 1928 103 81 4 chr1 167975198 167975470 -114218194 + AluSx SINE Alu 1 293 -19 531 282 44 5 chr1 167976794 167977000 -114216664 - MIR SINE MIR -3 259 46 2644 47 0 0 chr1 167977445 167977742 -114215922 - AluY SINE Alu -14 297 1 2347 96 7 3 chr1 167977824 167978125 -114215539 - AluJb SINE Alu -10 302 1 1886 162 0 0 chr1 167978710 167979000 -114214664 + AluJb SINE Alu 1 290 -22 180 0 0 0 chr1 167980403 167980423 -114213241 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 463 322 109 14 chr1 167980630 167980695 -114212969 - L1MEd LINE L1 -4579 1731 1674 2703 84 20 0 chr1 167980695 167981052 -114212612 - THE1B LTR MaLR 0 364 1 463 322 109 14 chr1 167981052 167981269 -114212395 - L1MEd LINE L1 -4636 1674 1422 1599 119 22 14 chr1 167981320 167981604 -114212060 + MER1B DNA MER1_type 93 338 -1 858 294 65 47 chr1 167981615 167982457 -114211207 - L1MEd LINE L1 -4862 1257 521 1822 127 29 14 chr1 167982612 167982888 -114210776 + AluSg SINE Alu 19 298 -12 239 239 113 81 chr1 167982896 167983118 -114210546 - L1MEd LINE L1 -5869 250 22 241 308 50 25 chr1 167983883 167984003 -114209661 + MIR3 SINE MIR 77 199 -9 254 269 102 28 chr1 167984954 167985062 -114208602 - L2 LINE L2 -5 3308 3193 385 167 267 33 chr1 167985241 167985361 -114208303 + MER5A DNA MER1_type 35 182 -7 956 182 11 0 chr1 167985718 167985905 -114207759 + MER53 DNA DNA 1 189 0 580 185 23 12 chr1 167985989 167986162 -114207502 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 858 115 35 0 chr1 167986186 167986360 -114207304 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 714 104 49 10 chr1 167986383 167986679 -114206985 + (TGGA)n Simple_repeat Simple_repeat 1 307 0 9720 164 54 4 chr1 167986964 167990302 -114203362 - L1PBa LINE L1 -3205 3657 6 306 155 24 24 chr1 167990444 167990528 -114203136 + CT-rich Low_complexity Low_complexity 1 84 0 2030 147 7 0 chr1 167990555 167990854 -114202810 - AluJb SINE Alu -11 301 1 21 36 0 0 chr1 167991257 167991285 -114202379 + AT_rich Low_complexity Low_complexity 1 28 0 244 185 37 0 chr1 167992207 167992261 -114201403 + L2 LINE L2 3216 3271 -1 2125 121 13 7 chr1 167993218 167993516 -114200148 + AluSx SINE Alu 13 312 0 881 275 24 0 chr1 167993544 167993755 -114199909 + MER58A DNA MER1_type 1 216 -8 234 349 0 0 chr1 167994324 167994450 -114199214 + CT-rich Low_complexity Low_complexity 1 126 0 540 225 88 19 chr1 167995201 167995361 -114198303 + MIR SINE MIR 54 224 -38 663 249 46 108 chr1 167996053 167996414 -114197250 + L1M4 LINE L1 2676 3058 -3088 1461 198 4 4 chr1 167996414 167996672 -114196992 - AluJb SINE Alu -54 258 1 663 249 46 108 chr1 167996672 167996790 -114196874 + L1M4 LINE L1 3058 3182 -2964 2262 107 0 0 chr1 167996790 167997100 -114196564 + AluSq SINE Alu 1 310 -3 663 249 46 108 chr1 167997100 167997124 -114196540 + L1M4 LINE L1 3182 3206 -2940 2272 72 0 41 chr1 167997124 167997443 -114196221 + AluY SINE Alu 1 306 -5 663 249 46 108 chr1 167997443 167997777 -114195887 + L1M4 LINE L1 3206 3463 -2683 265 202 34 11 chr1 167997838 167997927 -114195737 + L1M4 LINE L1 3876 3966 -2180 2437 113 0 19 chr1 167998216 167998580 -114195084 + L1PA11 LINE L1 5818 6174 0 734 137 34 8 chr1 167998801 167998918 -114194746 + FLAM_C SINE Alu 5 124 -9 767 22 0 0 chr1 167998925 167999015 -114194649 - L1PA3 LINE L1 -1196 4950 4861 7801 26 1 0 chr1 167999015 168000217 -114193447 + L1PA3 LINE L1 4952 6154 -1 418 250 106 80 chr1 168000303 168000853 -114192811 + L1M4c LINE L1 896 1635 -4928 1928 175 48 44 chr1 168000866 168001324 -114192340 + MER66B LTR ERV1 27 486 0 321 305 73 10 chr1 168001328 168001578 -114192086 + L1M1 LINE L1 2755 3097 -4583 1480 149 30 15 chr1 168001805 168002074 -114191590 + AluJb SINE Alu 33 305 -7 2151 117 0 0 chr1 168002604 168002911 -114190753 + AluSq SINE Alu 5 311 -2 231 257 181 0 chr1 168002999 168003104 -114190560 - MIR3 SINE MIR -12 196 73 487 330 102 0 chr1 168003236 168003500 -114190164 + MLT1K LTR MaLR 131 421 -167 1631 264 64 60 chr1 168003566 168003791 -114189873 + L1ME LINE L1 51 274 -5796 2214 100 0 0 chr1 168003791 168004092 -114189572 + AluSx SINE Alu 1 301 -11 1631 264 64 60 chr1 168004092 168004712 -114188952 + L1ME LINE L1 274 899 -5171 827 158 8 0 chr1 168004803 168004936 -114188728 - FLAM_A SINE Alu -1 141 8 599 255 144 0 chr1 168005059 168005212 -114188452 + MER5A DNA MER1_type 9 183 -6 2102 112 16 0 chr1 168005325 168005628 -114188036 + AluSx SINE Alu 1 308 -4 2251 106 0 0 chr1 168005665 168005977 -114187687 + AluSx SINE Alu 1 312 0 514 202 131 33 chr1 168005993 168006176 -114187488 - L2 LINE L2 -12 3301 3101 222 137 39 20 chr1 168006180 168006231 -114187433 + T-rich Low_complexity Low_complexity 4 55 0 257 269 104 0 chr1 168006231 168006298 -114187366 - L2 LINE L2 -237 3076 3003 235 286 20 20 chr1 168006329 168006427 -114187237 + L1ME LINE L1 5386 5483 -638 299 263 25 0 chr1 168006460 168006540 -114187124 + L1ME LINE L1 5602 5683 -438 478 341 48 44 chr1 168007096 168007325 -114186339 + MIR SINE MIR 31 260 -2 342 274 129 65 chr1 168007600 168008012 -114185652 - L2 LINE L2 -1241 2073 1636 226 253 13 13 chr1 168009816 168009891 -114183773 + GA-rich Low_complexity Low_complexity 4 78 0 2078 100 21 0 chr1 168010133 168010424 -114183240 - AluSx SINE Alu -15 297 1 308 83 21 0 chr1 168010716 168010764 -114182900 + (TG)n Simple_repeat Simple_repeat 1 49 0 1858 121 0 68 chr1 168010958 168011281 -114182383 + AluSx SINE Alu 1 301 -11 1302 198 114 12 chr1 168012536 168012869 -114180795 + MLT1D LTR MaLR 8 374 -131 397 193 23 34 chr1 168013132 168013220 -114180444 - MIR SINE MIR -31 231 145 451 174 9 73 chr1 168013255 168013325 -114180339 + MLT1D LTR MaLR 404 466 -39 1736 157 102 3 chr1 168013325 168013657 -114180007 + MLT1A1 LTR MaLR 1 365 0 451 174 9 73 chr1 168013657 168013695 -114179969 + MLT1D LTR MaLR 466 505 0 300 303 73 9 chr1 168013959 168014068 -114179596 + MIR SINE MIR 145 260 -2 428 339 77 22 chr1 168014706 168014889 -114178775 + MIR SINE MIR 60 252 -10 2279 86 0 26 chr1 168015603 168015916 -114177748 - AluSx SINE Alu -7 305 1 214 188 0 0 chr1 168016174 168016206 -114177458 + MER5C DNA MER1_type 1 32 -292 273 187 192 28 chr1 168016847 168017061 -114176603 - L1ME4a LINE L1 -3 6118 5870 319 280 129 23 chr1 168017543 168017675 -114175989 + MIR SINE MIR 12 157 -51 3693 290 127 42 chr1 168017775 168018343 -114175321 - L2 LINE L2 -1 3312 2793 2187 113 0 0 chr1 168018343 168018644 -114175020 - AluSx SINE Alu -11 301 1 3693 290 127 42 chr1 168018644 168020432 -114173232 - L2 LINE L2 -520 2793 750 6860 23 0 0 chr1 168020457 168021240 -114172424 - L1P LINE L1 -1820 4326 3544 769 166 0 19 chr1 168021233 168021390 -114172274 + L1P LINE L1 4326 4479 -1667 * 247 358 0 34 chr1 168022091 168022270 -114171394 + GA-rich Low_complexity Low_complexity 4 176 0 219 372 0 33 chr1 168022399 168022579 -114171085 + G-rich Low_complexity Low_complexity 4 177 0 273 288 0 0 chr1 168022952 168023025 -114170639 + tRNA-Gly-GGC tRNA tRNA 1 73 -1 300 265 133 0 chr1 168024179 168024277 -114169387 + FLAM_C SINE Alu 2 112 -21 376 480 6 11 chr1 168025227 168025406 -114168258 + polypurine Low_complexity Low_complexity 1 178 0 322 322 23 11 chr1 168025419 168025593 -114168071 + GA-rich Low_complexity Low_complexity 1 176 0 442 396 6 6 chr1 168025594 168025753 -114167911 + polypurine Low_complexity Low_complexity 1 159 0 368 250 51 6 chr1 168025754 168025910 -114167754 + GA-rich Low_complexity Low_complexity 1 163 0 252 398 12 0 chr1 168025910 168025993 -114167671 + polypurine Low_complexity Low_complexity 1 84 0 294 262 16 24 chr1 168025997 168026252 -114167412 + GA-rich Low_complexity Low_complexity 1 253 0 2081 196 203 24 chr1 168029441 168029992 -114163672 - MLT1E1 LTR MaLR 0 654 5 1857 128 17 10 chr1 168031386 168031675 -114161989 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr1 168031720 168031740 -114161924 + (CAA)n Simple_repeat Simple_repeat 2 21 0 945 235 144 16 chr1 168031754 168032268 -114161396 + L1ME LINE L1 2721 3300 -2846 15299 51 3 10 chr1 168032396 168034369 -114159295 - L1P LINE L1 -886 5260 3301 1237 145 0 20 chr1 168034668 168034868 -114158796 + AluSg/x SINE Alu 113 308 -4 1089 250 50 27 chr1 168034913 168035289 -114158375 + L1ME LINE L1 5263 5647 -523 285 225 50 12 chr1 168035373 168035453 -114158211 + L1ME LINE L1 5791 5873 -297 1794 139 31 14 chr1 168035487 168035781 -114157883 - AluJb SINE Alu -13 299 1 552 270 150 18 chr1 168036790 168037016 -114156648 - MIR SINE MIR -3 259 4 569 242 8 8 chr1 168037072 168037200 -114156464 + Charlie1 DNA MER1_type 31 158 -2603 603 230 203 0 chr1 168037543 168037691 -114155973 - MER5A DNA MER1_type 0 189 12 262 255 66 75 chr1 168037749 168037855 -114155809 - L2 LINE L2 -18 3254 3150 1270 159 28 5 chr1 168038412 168038626 -114155038 + MER20 DNA MER1_type 1 219 0 950 186 60 15 chr1 168038680 168038879 -114154785 + MER3 DNA MER1_type 2 209 0 263 313 0 0 chr1 168039399 168039482 -114154182 - MIR SINE MIR -20 242 160 182 167 0 56 chr1 168039506 168039542 -114154122 - L3 LINE CR1 -3 1574 1541 290 279 103 35 chr1 168040311 168040651 -114153013 + L1ME4a LINE L1 4801 5163 -983 1556 175 0 40 chr1 168040666 168040969 -114152695 + AluSx SINE Alu 1 291 -21 593 171 16 31 chr1 168040978 168041107 -114152557 + L1MD3 LINE L1 7859 7985 -10 976 164 22 68 chr1 168042109 168042446 -114151218 + AluJ SINE Alu 11 303 -9 434 311 104 6 chr1 168042453 168042617 -114151047 + L1 LINE L1 4662 4841 -1305 254 283 76 11 chr1 168042976 168043068 -114150596 + L2 LINE L2 3214 3311 -2 250 290 92 53 chr1 168043524 168043655 -114150009 + MIR3 SINE MIR 37 172 -36 882 10 0 0 chr1 168043678 168043779 -114149885 - L1P1 LINE L1 -347 5808 5708 2939 26 3 6 chr1 168043808 168044155 -114149509 + L1PA5 LINE L1 5804 6149 -5 27 0 0 0 chr1 168044155 168044182 -114149482 + AT_rich Low_complexity Low_complexity 1 27 0 306 292 50 42 chr1 168045140 168045260 -114148404 - MIR SINE MIR -84 178 58 217 323 0 0 chr1 168045430 168045492 -114148172 + MER5A DNA MER1_type 128 189 0 464 235 143 37 chr1 168046662 168046879 -114146785 + L1ME4a LINE L1 5649 5888 -233 214 211 0 0 chr1 168047075 168047113 -114146551 + (TA)n Simple_repeat Simple_repeat 1 38 0 1259 181 100 22 chr1 168047113 168047384 -114146280 - AluJo SINE Alu -10 292 1 281 223 86 36 chr1 168047544 168047683 -114145981 - L1ME4a LINE L1 -159 5962 5817 379 272 88 15 chr1 168047846 168047982 -114145682 - L2 LINE L2 -5 3308 3163 331 234 62 31 chr1 168048071 168048160 -114145504 + MIR SINE MIR 125 221 -41 2077 148 3 0 chr1 168048160 168048471 -114145193 + AluSx SINE Alu 1 312 0 331 234 62 31 chr1 168048471 168048509 -114145155 + MIR SINE MIR 221 256 -6 924 276 87 23 chr1 168048520 168048912 -114144752 - L1MC4a LINE L1 -1874 5934 5518 281 260 126 8 chr1 168048973 168049100 -114144564 - L1ME4a LINE L1 -382 5739 5598 362 218 118 18 chr1 168050700 168050810 -114142854 + MER96 DNA MER1_type? 53 173 -2 2288 235 53 2 chr1 168051304 168051952 -114141712 - L1ME1 LINE L1 -36 6144 5424 352 181 170 0 chr1 168052070 168052164 -114141500 + MER113 DNA MER1_type? 205 314 -207 534 57 0 0 chr1 168052295 168052365 -114141299 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 3546 136 40 2 chr1 168053644 168054225 -114139439 - LTR26 LTR ERV1 0 603 1 362 272 0 11 chr1 168054671 168054763 -114138901 - MER5A DNA MER1_type -80 109 19 682 218 67 22 chr1 168054799 168054978 -114138686 + MER5A DNA MER1_type 3 189 0 2901 181 19 8 chr1 168055176 168055689 -114137975 + MER44D DNA MER2_type 32 605 0 622 239 42 0 chr1 168055819 168055961 -114137703 - MER5A DNA MER1_type -40 149 2 234 204 184 19 chr1 168056158 168056261 -114137403 + MER5B DNA MER1_type 59 178 0 303 278 19 37 chr1 168057567 168057675 -114135989 - MIR SINE MIR -79 183 78 488 289 147 19 chr1 168057689 168058049 -114135615 + MLT1I LTR MaLR 4 409 0 522 254 107 24 chr1 168058088 168058436 -114135228 + MLT1J LTR MaLR 62 478 -33 705 176 8 23 chr1 168058450 168058581 -114135083 - FLAM_C SINE Alu -3 130 2 560 250 136 34 chr1 168058625 168058861 -114134803 - MIR SINE MIR -2 260 1 391 249 24 117 chr1 168059786 168059917 -114133747 + L1MC4a LINE L1 5704 5803 -2005 2131 116 0 7 chr1 168059917 168060209 -114133455 + AluSg SINE Alu 1 290 -20 391 249 24 117 chr1 168060209 168060326 -114133338 + L1MC4a LINE L1 5803 5929 -1879 289 235 33 64 chr1 168060326 168060488 -114133176 + L1ME4a LINE L1 1187 6060 0 1504 176 66 24 chr1 168060516 168060627 -114133037 + AluJo SINE Alu 1 106 -206 234 0 0 0 chr1 168060627 168060653 -114133011 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1504 176 66 24 chr1 168060653 168060830 -114132834 + AluJo SINE Alu 106 301 -11 437 285 70 49 chr1 168060915 168060977 -114132687 + L1M4 LINE L1 3374 3433 -2713 2117 91 4 0 chr1 168060977 168061240 -114132424 + AluSp SINE Alu 35 298 -15 437 285 70 49 chr1 168061240 168061521 -114132143 + L1M4 LINE L1 3433 3724 -2422 2083 127 7 0 chr1 168061575 168061866 -114131798 + AluSx SINE Alu 1 293 -19 1383 224 47 99 chr1 168061871 168062150 -114131514 + L1M4 LINE L1 4272 4564 -1582 2062 199 34 75 chr1 168062150 168062321 -114131343 + MLT1F LTR MaLR 3 179 -363 2119 134 0 0 chr1 168062321 168062619 -114131045 - AluSg SINE Alu -12 298 1 2062 199 34 75 chr1 168062619 168063010 -114130654 + MLT1F LTR MaLR 179 542 0 1383 224 47 99 chr1 168063010 168063468 -114130196 + L1M4 LINE L1 4564 4971 -1175 240 214 14 14 chr1 168064420 168064490 -114129174 + L1MEc LINE L1 2251 2320 -4076 735 235 92 92 chr1 168064495 168064776 -114128888 + AluJb SINE Alu 2 282 -30 2078 131 3 13 chr1 168065506 168065818 -114127846 - AluSx SINE Alu -1 311 3 2011 128 3 3 chr1 168066690 168066993 -114126671 - AluSx SINE Alu 0 303 1 526 233 89 74 chr1 168067045 168067160 -114126504 - MIR SINE MIR 0 262 150 270 0 0 0 chr1 168067160 168067190 -114126474 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 526 233 89 74 chr1 168067190 168067332 -114126332 - MIR SINE MIR -112 150 1 569 200 17 46 chr1 168067372 168067547 -114126117 - L1ME LINE L1 -734 5666 5497 2258 69 0 43 chr1 168067595 168067898 -114125766 - AluY SINE Alu -21 290 1 256 157 20 0 chr1 168067900 168067951 -114125713 - L1ME LINE L1 -3958 2426 2375 1086 199 5 9 chr1 168067959 168068175 -114125489 - AluY SINE Alu -2 309 95 2033 132 4 0 chr1 168068381 168068753 -114124911 - AluSx SINE Alu 0 373 1 526 233 89 74 chr1 168068805 168068920 -114124744 - MIR SINE MIR 0 262 150 339 25 0 0 chr1 168068920 168068960 -114124704 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 526 233 89 74 chr1 168068960 168069102 -114124562 - MIR SINE MIR -112 150 1 579 194 17 46 chr1 168069142 168069317 -114124347 - L1ME LINE L1 -732 6241 6072 2209 67 3 50 chr1 168069365 168069663 -114124001 - AluY SINE Alu -20 291 8 1283 251 49 108 chr1 168069673 168069728 -114123936 - L1MEc LINE L1 -4097 3041 2984 2220 90 40 3 chr1 168069728 168070028 -114123636 - AluY SINE Alu 0 311 1 1283 251 49 108 chr1 168070028 168070207 -114123457 - L1MEc LINE L1 -4154 2984 2796 2343 96 0 0 chr1 168070207 168070498 -114123166 - AluSx SINE Alu -21 291 1 1283 251 49 108 chr1 168070498 168071352 -114122312 - L1MEc LINE L1 -4342 2796 1981 984 185 26 16 chr1 168071352 168071541 -114122123 + Tigger1 DNA MER2_type 1 191 -2227 731 206 0 0 chr1 168071541 168071667 -114121997 - FLAM_C SINE Alu -12 131 6 14496 121 26 12 chr1 168071673 168071726 -114121938 + Tigger1 DNA MER2_type 184 235 -2183 2217 128 50 8 chr1 168071726 168072086 -114121578 + THE1C LTR MaLR 1 375 0 14496 121 26 12 chr1 168072086 168074235 -114119429 + Tigger1 DNA MER2_type 235 2418 0 663 221 52 39 chr1 168074299 168074530 -114119134 - L1MEc LINE L1 -5306 1641 1327 661 321 15 11 chr1 168075019 168075293 -114118371 - L1MEc LINE L1 -6030 1108 834 902 97 0 0 chr1 168075761 168075875 -114117789 - AluSx SINE Alu -16 296 183 874 124 0 0 chr1 168075877 168075990 -114117674 - AluSx SINE Alu -199 113 1 939 159 14 4 chr1 168076079 168076287 -114117377 - AluJb SINE Alu -11 301 1 864 283 96 28 chr1 168076300 168076760 -114116904 - HAL1 LINE L1 -847 1660 1170 * 2921 172 36 64 chr1 168076756 168077470 -114116194 - L1MB8 LINE L1 -1 6177 5484 356 304 127 23 chr1 168077589 168077809 -114115855 - HAL1 LINE L1 -1422 1085 843 243 0 0 0 chr1 168077932 168077959 -114115705 + (TC)n Simple_repeat Simple_repeat 2 28 0 303 350 7 7 chr1 168077991 168078128 -114115536 + L2 LINE L2 2150 2286 -1028 475 255 40 60 chr1 168078133 168078333 -114115331 + L2 LINE L2 3118 3313 0 315 282 101 68 chr1 168078767 168079015 -114114649 - MIR SINE MIR 0 262 7 193 244 0 0 chr1 168079233 168079274 -114114390 - MIR SINE MIR 0 262 222 291 281 109 53 chr1 168079762 168080100 -114113564 + L1ME4a LINE L1 5559 5915 -206 2378 98 0 0 chr1 168080454 168080749 -114112915 - AluSx SINE Alu -17 295 1 1646 278 125 12 chr1 168081188 168082179 -114111485 - L2 LINE L2 -1 3312 2220 934 130 0 0 chr1 168082209 168082332 -114111332 - FLAM_C SINE Alu -20 123 1 723 256 22 34 chr1 168082347 168082460 -114111204 - L2 LINE L2 -1104 2210 2097 2103 149 3 0 chr1 168082460 168082769 -114110895 + AluSx SINE Alu 1 310 -2 723 256 22 34 chr1 168082769 168082924 -114110740 - L2 LINE L2 -1217 2097 1945 1064 171 81 53 chr1 168082938 168083184 -114110480 + L1MD2 LINE L1 4771 5023 -1123 * 2082 201 31 4 chr1 168083180 168083686 -114109978 + L1MD2 LINE L1 5254 5962 -397 387 303 84 17 chr1 168083846 168084024 -114109640 - L2 LINE L2 -209 3063 2874 219 232 174 0 chr1 168084612 168084681 -114108983 - MIR SINE MIR -165 97 17 201 309 107 0 chr1 168085479 168085563 -114108101 + MIR SINE MIR 31 123 -85 1858 129 0 0 chr1 168085804 168086067 -114107597 + AluSx SINE Alu 5 267 -45 225 167 0 0 chr1 168086680 168086716 -114106948 + L1PA12 LINE L1 1354 1389 -6192 369 256 60 8 chr1 168086789 168086906 -114106758 - L2 LINE L2 -16 3297 3175 1693 138 130 0 chr1 168087751 168088027 -114105637 + AluJo SINE Alu 1 312 0 228 282 46 82 chr1 168089241 168089361 -114104303 + MIR3 SINE MIR 15 127 -81 2251 114 0 3 chr1 168089361 168089658 -114104006 - AluSx SINE Alu -10 302 7 228 282 46 82 chr1 168089658 168089732 -114103932 + MIR3 SINE MIR 127 202 -6 1870 203 112 24 chr1 168089951 168090414 -114103250 + MLT1D LTR MaLR 1 504 -1 491 281 50 50 chr1 168090439 168090506 -114103158 - L1ME4a LINE L1 -236 5885 5819 2691 129 25 53 chr1 168090506 168090873 -114102791 - L1MB3 LINE L1 -3 6180 5829 2423 86 0 0 chr1 168090873 168091165 -114102499 - AluSg SINE Alu -14 296 5 2691 129 25 53 chr1 168091165 168091307 -114102357 - L1MB3 LINE L1 -354 5829 5685 491 281 50 50 chr1 168091307 168091520 -114102144 - L1ME4a LINE L1 -301 5820 5605 24 0 0 0 chr1 168091568 168091592 -114102072 + AT_rich Low_complexity Low_complexity 1 24 0 270 211 0 28 chr1 168092418 168092489 -114101175 + MIR SINE MIR 60 128 -134 380 311 16 36 chr1 168092849 168093042 -114100622 - MIR SINE MIR 0 262 74 337 300 117 20 chr1 168093528 168093775 -114099889 + L1ME4a LINE L1 5560 5830 -291 1084 221 5 9 chr1 168093791 168094004 -114099660 + MER58A DNA MER1_type 13 224 0 392 242 61 74 chr1 168094114 168094238 -114099426 - L1ME4a LINE L1 -170 5951 5830 2247 108 0 3 chr1 168094238 168094535 -114099129 - AluSc SINE Alu -13 296 1 392 242 61 74 chr1 168094535 168094641 -114099023 - L1ME4a LINE L1 -291 5830 5724 2255 149 27 3 chr1 168096825 168097200 -114096464 + MLT1B LTR MaLR 1 384 -6 467 147 156 9 chr1 168097867 168097976 -114095688 + MIR SINE MIR 13 137 -125 243 304 144 8 chr1 168098075 168098200 -114095464 + MIR SINE MIR 114 255 -7 1191 126 39 0 chr1 168098926 168099108 -114094556 - MER53 DNA DNA 0 189 1 301 317 35 7 chr1 168099368 168099513 -114094151 + L1 LINE L1 4696 4844 -1302 725 280 60 8 chr1 168099573 168099823 -114093841 + LTR16A LTR ERVL 180 442 -8 741 190 2 22 chr1 168099999 168100149 -114093515 + MLT1F LTR MaLR 400 542 0 430 346 133 3 chr1 168100181 168100528 -114093136 + HAL1b LINE L1 445 836 -512 1175 171 5 28 chr1 168100859 168101076 -114092588 - AluJb SINE Alu -16 296 85 568 88 0 0 chr1 168101076 168101144 -114092520 - AluSq SINE Alu -63 250 183 865 124 0 0 chr1 168101146 168101259 -114092405 - AluSq SINE Alu -200 113 1 947 171 5 4 chr1 168101348 168101558 -114092106 - AluJb SINE Alu -11 301 1 914 270 98 30 chr1 168101571 168102031 -114091633 - HAL1 LINE L1 -847 1660 1170 * 2970 171 36 64 chr1 168102027 168102741 -114090923 - L1MB8 LINE L1 -1 6177 5484 413 290 127 27 chr1 168102860 168103081 -114090583 - HAL1 LINE L1 -1422 1085 843 369 0 0 0 chr1 168103204 168103245 -114090419 + (TC)n Simple_repeat Simple_repeat 2 42 0 336 350 7 7 chr1 168103275 168103412 -114090252 + L2 LINE L2 2150 2286 -1028 530 255 40 60 chr1 168103417 168103617 -114090047 + L2 LINE L2 3118 3313 0 388 278 101 68 chr1 168104051 168104299 -114089365 - MIR SINE MIR 0 262 7 213 219 0 0 chr1 168104517 168104558 -114089106 - MIR SINE MIR 0 262 222 373 279 110 50 chr1 168105046 168105383 -114088281 + L1ME4a LINE L1 5559 5915 -206 2123 114 0 10 chr1 168105737 168106035 -114087629 - AluSx SINE Alu -17 295 1 1640 276 145 13 chr1 168106474 168107447 -114086217 - L2 LINE L2 -1 3312 2220 926 130 0 0 chr1 168107477 168107600 -114086064 - FLAM_C SINE Alu -20 123 1 800 248 75 25 chr1 168107616 168107729 -114085935 - L2 LINE L2 -1104 2210 2104 2152 137 3 6 chr1 168107729 168108042 -114085622 + AluSx SINE Alu 1 312 0 800 248 75 25 chr1 168108042 168108206 -114085458 - L2 LINE L2 -1210 2104 1919 1078 171 81 53 chr1 168108206 168108452 -114085212 + L1MD2 LINE L1 4771 5023 -1123 * 2124 192 35 2 chr1 168108448 168108954 -114084710 + L1MD2 LINE L1 5254 5962 -397 421 291 89 28 chr1 168109114 168109293 -114084371 - L2 LINE L2 -209 3063 2874 245 232 174 0 chr1 168109880 168109949 -114083715 - MIR SINE MIR -165 97 17 180 319 35 17 chr1 168110061 168110177 -114083487 + MIR SINE MIR 109 226 -36 222 309 107 0 chr1 168110747 168110831 -114082833 + MIR SINE MIR 31 123 -85 2193 110 0 0 chr1 168111068 168111358 -114082306 + AluSx SINE Alu 1 290 -22 237 256 12 49 chr1 168111412 168111494 -114082170 + (TGGG)n Simple_repeat Simple_repeat 1 79 0 430 156 33 44 chr1 168111529 168111709 -114081955 + GA-rich Low_complexity Low_complexity 1 178 0 541 132 0 69 chr1 168111745 168111934 -114081730 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 251 140 19 56 chr1 168111935 168112042 -114081622 + GA-rich Low_complexity Low_complexity 2 104 0 353 164 0 0 chr1 168112163 168112224 -114081440 + AluS SINE Alu 229 289 -12 312 172 0 0 chr1 168112234 168112292 -114081372 + (TA)n Simple_repeat Simple_repeat 2 59 0 2171 102 28 0 chr1 168112293 168112577 -114081087 - AluSg1 SINE Alu -17 292 1 212 350 21 0 chr1 168112788 168112885 -114080779 + MIR SINE MIR 162 260 -2 356 241 309 36 chr1 168113490 168113826 -114079838 - L2 LINE L2 -338 2976 2549 296 310 113 52 chr1 168113830 168114043 -114079621 - L3 LINE CR1 -899 678 453 200 270 0 63 chr1 168115286 168115349 -114078315 - L3 LINE CR1 -2 1575 1517 2193 131 20 0 chr1 168115461 168115767 -114077897 - AluSx SINE Alu 0 312 1 658 309 40 16 chr1 168115867 168116116 -114077548 + MIR SINE MIR 8 262 0 739 277 40 5 chr1 168116423 168116625 -114077039 - MIR SINE MIR -6 256 48 949 190 15 15 chr1 168116627 168116822 -114076842 - MER3 DNA MER1_type 0 209 15 253 283 29 5 chr1 168116834 168116917 -114076747 - MER5A DNA MER1_type -37 141 68 231 306 57 48 chr1 168116934 168117058 -114076606 + MIR3 SINE MIR 5 129 -79 243 333 111 0 chr1 168117601 168117691 -114075973 - MER5B DNA MER1_type -40 138 39 517 265 53 106 chr1 168117764 168118141 -114075523 + MLT1J LTR MaLR 6 362 -149 523 83 69 0 chr1 168118426 168118498 -114075166 - L1PA11 LINE L1 0 6174 6098 1579 162 60 126 chr1 168118794 168119214 -114074450 + MSTD LTR MaLR 5 396 0 2799 191 21 67 chr1 168119301 168120280 -114073384 - L1M4 LINE L1 -3333 3049 2120 23335 28 2 0 chr1 168120280 168123715 -114069949 - L1PA2 LINE L1 0 6155 2752 1921 93 93 4 chr1 168124249 168124517 -114069147 - AluSg1 SINE Alu -17 292 1 251 330 21 0 chr1 168124728 168124825 -114068839 + MIR SINE MIR 162 260 -2 375 241 309 36 chr1 168125430 168125766 -114067898 - L2 LINE L2 -338 2976 2549 303 305 113 52 chr1 168125770 168125983 -114067681 - L3 LINE CR1 -899 678 453 200 270 0 63 chr1 168127225 168127288 -114066376 - L3 LINE CR1 -2 1575 1517 222 37 0 0 chr1 168127400 168127427 -114066237 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2114 112 22 0 chr1 168127430 168127706 -114065958 - AluSx SINE Alu -30 282 1 637 311 40 16 chr1 168127807 168128055 -114065609 + MIR SINE MIR 9 262 0 726 282 40 5 chr1 168128362 168128564 -114065100 - MIR SINE MIR -6 256 48 953 190 15 15 chr1 168128566 168128761 -114064903 - MER3 DNA MER1_type 0 209 15 253 283 29 5 chr1 168128773 168128856 -114064808 - MER5A DNA MER1_type -37 141 68 225 303 46 55 chr1 168128888 168128997 -114064667 + MIR SINE MIR 22 129 -79 259 284 61 40 chr1 168129507 168129633 -114064031 - MER5B DNA MER1_type -4 185 39 532 268 53 106 chr1 168129706 168130083 -114063581 + MLT1J LTR MaLR 6 362 -149 526 83 69 0 chr1 168130368 168130440 -114063224 - L1PA11 LINE L1 0 6174 6098 1552 161 59 130 chr1 168130736 168131158 -114062506 + MSTD LTR MaLR 5 396 0 1990 205 25 48 chr1 168131245 168132229 -114061435 - L1M4c LINE L1 -3333 3311 2382 228 86 0 0 chr1 168132244 168132279 -114061385 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 11160 133 66 67 chr1 168132279 168133564 -114060100 - L1PA3 LINE L1 -16 6139 4854 771 149 33 8 chr1 168133564 168133685 -114059979 - FLAM_C SINE Alu -9 124 1 11160 133 66 67 chr1 168133685 168135041 -114058623 - L1PA3 LINE L1 -1301 4854 3498 2326 74 0 58 chr1 168135041 168135367 -114058297 - AluY SINE Alu -4 307 1 11160 133 66 67 chr1 168135367 168135402 -114058262 - L1PA3 LINE L1 -2657 3498 3464 481 127 0 0 chr1 168135402 168135473 -114058191 - AluSp/q SINE Alu -13 300 230 11160 133 66 67 chr1 168135473 168136829 -114056835 - L1PA3 LINE L1 -2691 3464 2039 303 291 28 21 chr1 168136820 168136961 -114056703 - L1M4c LINE L1 -4240 2406 2265 * 6682 199 70 59 chr1 168136966 168139086 -114054578 - L1M4c LINE L1 -4480 2166 1 5448 156 13 36 chr1 168140469 168141419 -114052245 + L1PA16 LINE L1 4750 5648 -518 216 0 0 0 chr1 168141419 168141443 -114052221 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5448 156 13 36 chr1 168141443 168141945 -114051719 + L1PA16 LINE L1 5648 6160 -6 1115 289 38 0 chr1 168141953 168142371 -114051293 + L1MD1 LINE L1 4951 5384 -762 3453 185 54 49 chr1 168142446 168142568 -114051096 + L1MD1 LINE L1 5360 5480 -762 1978 137 0 23 chr1 168142568 168142874 -114050790 + AluSx SINE Alu 2 300 -12 3453 185 54 49 chr1 168142874 168143557 -114050107 + L1MD1 LINE L1 5480 6172 -70 2221 104 40 0 chr1 168143557 168143854 -114049810 - AluSx SINE Alu -2 310 2 3453 185 54 49 chr1 168143854 168143905 -114049759 + L1MD1 LINE L1 6172 6221 -21 1986 110 7 78 chr1 168143925 168144097 -114049567 - AluSx SINE Alu -25 287 145 1929 96 0 0 chr1 168144097 168144347 -114049317 - AluSq SINE Alu -20 293 44 1986 110 7 78 chr1 168144347 168144483 -114049181 - AluSx SINE Alu -167 145 1 579 274 73 28 chr1 168145146 168145394 -114048270 + LTR33 LTR ERVL 263 521 0 520 150 115 0 chr1 168145522 168145635 -114048029 + MER53 DNA DNA 64 189 0 724 296 87 45 chr1 168145719 168146406 -114047258 - L1M4 LINE L1 -1667 4479 3764 600 305 14 27 chr1 168146758 168146981 -114046683 + L2 LINE L2 3094 3313 0 2493 79 0 0 chr1 168148691 168148996 -114044668 + AluY SINE Alu 1 305 -6 187 215 292 0 chr1 168149556 168149621 -114044043 + L2 LINE L2 3183 3266 -6 319 259 24 24 chr1 168150654 168150739 -114042925 + L2 LINE L2 3187 3271 -42 228 86 0 0 chr1 168151204 168151239 -114042425 + (CCA)n Simple_repeat Simple_repeat 2 36 0 653 216 102 42 chr1 168151240 168151453 -114042211 - MIR SINE MIR -10 252 24 198 103 0 0 chr1 168152320 168152349 -114041315 + (TAA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr1 168153049 168153079 -114040585 + AT_rich Low_complexity Low_complexity 1 30 0 1881 120 43 29 chr1 168153265 168153541 -114040123 + AluSx SINE Alu 1 280 -32 213 39 0 0 chr1 168153542 168153568 -114040096 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 2053 126 4 0 chr1 168153720 168153998 -114039666 + AluSq SINE Alu 1 279 -34 969 187 126 0 chr1 168154435 168154633 -114039031 - MER58A DNA MER1_type -1 223 1 361 398 23 32 chr1 168154902 168155118 -114038546 + L2 LINE L2 2970 3183 -89 733 182 187 30 chr1 168155791 168155957 -114037707 + MIR SINE MIR 7 212 -50 2657 125 33 21 chr1 168155957 168156380 -114037284 - MSTA LTR MaLR 0 428 1 733 182 187 30 chr1 168156380 168156416 -114037248 + MIR SINE MIR 212 241 -21 1275 221 126 6 chr1 168156522 168156880 -114036784 + MLT1D LTR MaLR 3 403 -102 894 132 7 21 chr1 168156904 168157048 -114036616 - FLAM_C SINE Alu -1 142 1 640 193 66 36 chr1 168157054 168157220 -114036444 - MLT1B LTR MaLR -219 171 1 358 243 65 9 chr1 168157334 168157441 -114036223 - MIR SINE MIR -70 192 80 1850 170 26 26 chr1 168158448 168158475 -114035189 - MER7A DNA MER2_type -2693 345 319 2262 66 0 90 chr1 168158475 168158810 -114034854 - AluY SINE Alu -6 305 1 1850 170 26 26 chr1 168158810 168159129 -114034535 - MER7A DNA MER2_type -2718 320 1 426 248 245 43 chr1 168159234 168159516 -114034148 + MER102b DNA MER1_type 3 341 0 210 132 26 0 chr1 168159516 168159554 -114034110 + MIR SINE MIR 102 140 -122 1742 161 30 7 chr1 168159561 168159865 -114033799 + L1MB7 LINE L1 5856 6166 -18 186 284 40 14 chr1 168160218 168160292 -114033372 - MIR SINE MIR -61 201 126 608 314 28 8 chr1 168160469 168160721 -114032943 + MIR SINE MIR 3 259 -3 2131 119 3 3 chr1 168162312 168162606 -114031058 + AluSx SINE Alu 3 296 -16 655 14 0 0 chr1 168164414 168164488 -114029176 - tRNA-Gly-GGC tRNA tRNA 0 74 1 547 70 0 0 chr1 168165230 168165301 -114028363 - tRNA-Gly-GGC tRNA tRNA -3 71 1 210 182 0 0 chr1 168165658 168165691 -114027973 + L2 LINE L2 3259 3291 -22 229 283 75 100 chr1 168165726 168165846 -114027818 - L3 LINE CR1 -107 1470 1354 309 357 56 34 chr1 168166797 168167210 -114026454 + L2 LINE L2 2649 3157 -115 237 314 119 22 chr1 168167398 168167532 -114026132 - MIR SINE MIR -65 143 20 292 205 205 0 chr1 168168425 168168537 -114025127 + MER5C DNA MER1_type 136 270 -54 24 0 0 0 chr1 168169314 168169338 -114024326 + AT_rich Low_complexity Low_complexity 1 24 0 1280 241 67 39 chr1 168171282 168171772 -114021892 - MLT1H LTR MaLR 0 549 46 2459 142 33 26 chr1 168172608 168173031 -114020633 - MSTB LTR MaLR 0 426 1 428 302 66 11 chr1 168173305 168173487 -114020177 - MIR SINE MIR -55 207 16 1618 133 17 87 chr1 168173863 168174163 -114019501 + AluJo SINE Alu 25 303 -9 276 192 0 41 chr1 168174412 168174485 -114019179 - L2 LINE L2 -85 3228 3159 655 14 0 0 chr1 168174885 168174959 -114018705 + tRNA-Gly-GGC tRNA tRNA 1 74 0 288 195 230 9 chr1 168175147 168175260 -114018404 - L1ME4a LINE L1 -33 6088 5951 908 183 13 57 chr1 168175328 168175558 -114018106 + L1MB7 LINE L1 5946 6165 -19 616 28 0 0 chr1 168175713 168175784 -114017880 + tRNA-Gly-GGC tRNA tRNA 1 71 -3 604 300 30 22 chr1 168176486 168176736 -114016928 + MIR SINE MIR 7 256 -6 1184 80 0 0 chr1 168176750 168176887 -114016777 + AluSq/x SINE Alu 1 137 -175 2239 97 17 3 chr1 168176888 168177177 -114016487 + AluSg SINE Alu 1 293 -17 482 237 64 78 chr1 168177186 168177270 -114016394 + L1ME1 LINE L1 5087 5171 -975 716 208 0 0 chr1 168177270 168177395 -114016269 + FLAM_A SINE Alu 5 129 -4 482 237 64 78 chr1 168177395 168177529 -114016135 + L1ME1 LINE L1 5171 5302 -844 1881 135 16 30 chr1 168177585 168177889 -114015775 + AluJo SINE Alu 1 300 -12 394 323 49 24 chr1 168177904 168178068 -114015596 - MIR SINE MIR -32 230 63 247 243 86 0 chr1 168178175 168178245 -114015419 - L1MC5 LINE L1 -178 7783 7708 1985 228 59 90 chr1 168178780 168178945 -114014719 + L1MC4a LINE L1 6887 7056 -752 2020 126 7 27 chr1 168178945 168179246 -114014418 + AluSx SINE Alu 2 296 -16 1985 228 59 90 chr1 168179246 168179892 -114013772 + L1MC4a LINE L1 7056 7673 -135 16827 47 60 3 chr1 168180027 168182277 -114011387 - L1P LINE L1 -3767 2379 1 296 191 170 0 chr1 168182283 168182377 -114011287 - MER113 DNA MER1_type? -207 314 205 2165 233 53 2 chr1 168182495 168183143 -114010521 + L1ME1 LINE L1 5424 6144 -36 318 227 118 18 chr1 168183637 168183747 -114009917 - MER96 DNA MER1_type? -2 173 53 189 305 84 32 chr1 168183946 168184041 -114009623 - L2 LINE L2 -215 3098 2999 192 288 14 55 chr1 168184419 168184492 -114009172 - L2 LINE L2 0 3272 3203 411 257 103 69 chr1 168185303 168185478 -114008186 + L1ME4a LINE L1 5567 5747 -374 782 287 84 23 chr1 168185535 168185929 -114007735 + L1MC4a LINE L1 5518 5935 -1873 355 221 115 33 chr1 168185940 168185972 -114007692 - MIR SINE MIR -6 256 228 2137 145 3 0 chr1 168185972 168186283 -114007381 - AluSx SINE Alu 0 312 1 355 221 115 33 chr1 168186283 168186372 -114007292 - MIR SINE MIR -34 228 125 451 270 73 34 chr1 168186419 168186597 -114007067 + L2 LINE L2 3124 3308 -5 233 216 93 43 chr1 168186760 168186899 -114006765 + L1ME4a LINE L1 5817 5962 -159 1441 156 100 19 chr1 168187059 168187329 -114006335 + AluJo SINE Alu 1 292 -20 195 184 0 0 chr1 168187329 168187367 -114006297 + (TA)n Simple_repeat Simple_repeat 1 38 0 449 230 143 37 chr1 168187563 168187780 -114005884 - L1ME4a LINE L1 -233 5888 5649 184 361 52 44 chr1 168188580 168188951 -114004713 + L2 LINE L2 2244 2617 -697 218 323 0 0 chr1 168188951 168189013 -114004651 - MER5A DNA MER1_type 0 189 128 313 292 50 42 chr1 168189183 168189303 -114004361 + MIR SINE MIR 58 178 -84 26 0 0 0 chr1 168190263 168190289 -114003375 + AT_rich Low_complexity Low_complexity 1 26 0 2952 23 3 6 chr1 168190289 168190636 -114003028 - L1PA5 LINE L1 -5 6149 5804 842 10 0 0 chr1 168190665 168190766 -114002898 + L1P2 LINE L1 5708 5808 -347 257 290 92 53 chr1 168190789 168190920 -114002744 - MIR3 SINE MIR -36 172 37 319 264 77 0 chr1 168191377 168191468 -114002196 - L2 LINE L2 -2 3311 3214 237 312 100 6 chr1 168191825 168191995 -114001669 - L1M4 LINE L1 -1303 5237 5052 1686 143 21 94 chr1 168191998 168192326 -114001338 - AluJb SINE Alu -8 304 1 380 303 101 75 chr1 168192504 168192920 -114000744 - L1MDa LINE L1 -3179 3361 2935 471 322 67 38 chr1 168193001 168193422 -114000242 - L1MDa LINE L1 -3700 2840 2400 930 264 52 34 chr1 168193422 168193809 -113999855 + L1MC4a LINE L1 5528 5921 -1887 21 0 0 0 chr1 168193810 168193831 -113999833 + AT_rich Low_complexity Low_complexity 1 21 0 982 301 152 38 chr1 168193831 168194252 -113999412 - L1M4 LINE L1 -2373 3773 3255 2647 68 0 0 chr1 168194252 168194563 -113999101 - AluY SINE Alu 0 311 1 982 301 152 38 chr1 168194563 168194773 -113998891 - L1M4 LINE L1 -2891 3255 3070 330 291 23 35 chr1 168195841 168195927 -113997737 - L1MC4 LINE L1 -1341 6701 6617 1498 212 14 17 chr1 168195943 168196231 -113997433 - AluJo SINE Alu -24 288 2 219 36 0 0 chr1 168196502 168196530 -113997134 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1820 136 29 4 chr1 168196532 168196804 -113996860 - AluSx SINE Alu -33 279 1 484 257 9 9 chr1 168197017 168197130 -113996534 + MER81 DNA DNA 2 114 0 226 296 196 62 chr1 168197649 168197940 -113995724 - L2 LINE L2 -355 2959 2630 703 162 63 0 chr1 168197960 168198071 -113995593 + AluSq/x SINE Alu 2 119 -194 487 300 97 64 chr1 168198080 168198670 -113994994 - L2 LINE L2 -688 2626 2018 251 225 173 81 chr1 168199027 168199270 -113994394 - MIR SINE MIR -2 260 1 274 150 125 0 chr1 168199626 168199706 -113993958 - MER106B DNA MER1_type -1 1058 969 2460 182 108 15 chr1 168199756 168200032 -113993632 - L1MD2 LINE L1 -10 6349 6100 3735 149 61 9 chr1 168200032 168200705 -113992959 - MER67C LTR ERV1 -2 708 1 2460 182 108 15 chr1 168200705 168200967 -113992697 - L1MD2 LINE L1 -259 6100 5761 855 198 6 30 chr1 168200971 168201138 -113992526 - MER106A DNA MER1_type -73 163 1 245 341 12 0 chr1 168202813 168202898 -113990766 + L2 LINE L2 3186 3271 -1 355 252 17 34 chr1 168203314 168203433 -113990231 + MIR SINE MIR 40 156 -106 1069 210 55 43 chr1 168203442 168203770 -113989894 + MER46C DNA MER2_type 7 338 0 191 257 64 64 chr1 168203770 168203879 -113989785 + MIR SINE MIR 153 261 -1 338 341 8 16 chr1 168204869 168204995 -113988669 + MER5A DNA MER1_type 29 153 -36 660 327 35 19 chr1 168205143 168205403 -113988261 - LTR16C LTR ERVL -198 293 30 8141 200 60 37 chr1 168206210 168208287 -113985377 - L1MDa LINE L1 -3890 2650 527 752 232 115 9 chr1 168208286 168208563 -113985101 - L1MC5 LINE L1 -1007 6807 6500 * 1637 168 16 40 chr1 168208618 168208754 -113984910 + AluJb SINE Alu 1 139 -173 2067 74 0 19 chr1 168208754 168209024 -113984640 + AluY SINE Alu 37 301 -10 1637 168 16 40 chr1 168209024 168209190 -113984474 + AluJb SINE Alu 139 296 -16 481 331 139 3 chr1 168209535 168209867 -113983797 - HAL1b LINE L1 -527 821 445 717 190 3 23 chr1 168209899 168210049 -113983615 - MLT1F LTR MaLR 0 542 400 774 272 60 8 chr1 168210225 168210475 -113983189 - LTR16A LTR ERVL -8 442 180 338 266 153 25 chr1 168210519 168210722 -113982942 - L1M4 LINE L1 -1279 4867 4639 1142 126 39 0 chr1 168210940 168211122 -113982542 + MER53 DNA DNA 1 189 0 212 304 144 8 chr1 168211846 168211971 -113981693 - MIR SINE MIR -7 255 114 425 147 156 9 chr1 168212070 168212179 -113981485 - MIR SINE MIR -125 137 13 2242 152 27 3 chr1 168212846 168213221 -113980443 - MLT1B LTR MaLR -6 384 1 392 242 61 74 chr1 168215403 168215509 -113978155 + L1ME4a LINE L1 5724 5830 -291 2287 104 0 3 chr1 168215509 168215806 -113977858 + AluSc SINE Alu 1 296 -13 392 242 61 74 chr1 168215806 168215930 -113977734 + L1ME4a LINE L1 5830 5951 -170 1115 211 5 9 chr1 168216040 168216253 -113977411 - MER58A DNA MER1_type 0 224 13 337 300 117 20 chr1 168216269 168216516 -113977148 - L1ME4a LINE L1 -291 5830 5560 583 250 21 36 chr1 168217003 168217195 -113976469 + MIR SINE MIR 74 262 0 270 211 0 28 chr1 168217555 168217626 -113976038 - MIR SINE MIR -134 128 60 24 0 0 0 chr1 168218451 168218475 -113975189 + AT_rich Low_complexity Low_complexity 1 24 0 491 281 50 50 chr1 168218523 168218736 -113974928 + L1ME4a LINE L1 5605 5820 -301 2682 127 25 60 chr1 168218736 168218878 -113974786 + L1MB3 LINE L1 5685 5830 -353 2411 83 0 0 chr1 168218878 168219166 -113974498 + AluSg SINE Alu 5 292 -18 2682 127 25 60 chr1 168219166 168219537 -113974127 + L1MB3 LINE L1 5830 6180 -3 491 281 50 50 chr1 168219537 168219604 -113974060 + L1ME4a LINE L1 5819 5885 -236 1841 207 112 24 chr1 168219629 168220092 -113973572 - MLT1D LTR MaLR -1 504 1 236 277 46 82 chr1 168220312 168220386 -113973278 - MIR3 SINE MIR -6 202 127 2305 104 0 3 chr1 168220386 168220683 -113972981 + AluSx SINE Alu 7 302 -10 236 277 46 82 chr1 168220683 168220803 -113972861 - MIR3 SINE MIR -81 127 15 187 265 43 43 chr1 168221859 168221976 -113971688 - L2 LINE L2 -833 2481 2365 1685 134 131 0 chr1 168222012 168222319 -113971345 - AluJo SINE Alu 0 343 1 384 248 60 8 chr1 168223164 168223281 -113970383 + L2 LINE L2 3175 3297 -16 225 167 0 0 chr1 168223354 168223390 -113970274 - L1PA12 LINE L1 -6192 1389 1354 1086 206 80 20 chr1 168223506 168223807 -113969857 + MER33 DNA MER1_type 1 319 -5 328 228 13 0 chr1 168224416 168224495 -113969169 + MER116 DNA Mariner 1 80 0 297 51 0 0 chr1 168225227 168225266 -113968398 + (TC)n Simple_repeat Simple_repeat 2 40 0 1794 160 0 21 chr1 168225274 168225561 -113968103 - AluJo SINE Alu -30 282 2 2021 147 0 22 chr1 168225951 168226264 -113967400 + AluSx SINE Alu 1 306 -6 9166 26 0 0 chr1 168227031 168228858 -113964806 - L1PA3 LINE L1 -2 6153 4326 6870 19 0 0 chr1 168228858 168229634 -113964030 + L1PA3 LINE L1 3551 4326 -1820 1142 288 172 21 chr1 168229659 168230512 -113963152 + L2 LINE L2 750 1731 -1583 289 192 192 28 chr1 168230934 168231148 -113962516 + L1ME4a LINE L1 5870 6118 -3 190 219 0 0 chr1 168231789 168231821 -113961843 - MER5C DNA MER1_type -292 32 1 2434 85 0 25 chr1 168232079 168232395 -113961269 + AluSx SINE Alu 1 308 -4 364 363 65 0 chr1 168233126 168233294 -113960370 - MIR SINE MIR -24 238 60 253 289 24 12 chr1 168233944 168234027 -113959637 - MIR SINE MIR -14 248 165 452 174 9 73 chr1 168234305 168234343 -113959321 - MLT1D LTR MaLR 0 505 466 1718 160 102 3 chr1 168234343 168234675 -113958989 - MLT1A1 LTR MaLR 0 365 1 452 174 9 73 chr1 168234675 168234745 -113958919 - MLT1D LTR MaLR -39 466 404 330 188 24 35 chr1 168234780 168234865 -113958799 + MIR SINE MIR 145 228 -34 1260 198 114 12 chr1 168235131 168235464 -113958200 - MLT1D LTR MaLR -131 374 8 2058 115 0 67 chr1 168236717 168237047 -113956617 - AluSx SINE Alu -4 308 1 314 45 23 0 chr1 168237241 168237285 -113956379 + (CA)n Simple_repeat Simple_repeat 1 45 0 2211 99 20 0 chr1 168237577 168237869 -113955795 + AluSx SINE Alu 1 298 -14 226 253 13 13 chr1 168238111 168238186 -113955478 + CT-rich Low_complexity Low_complexity 4 78 0 25601 24 5 0 chr1 168239600 168243331 -113950333 + L1PA2 LINE L1 2417 6151 -4 222 37 0 0 chr1 168243372 168243399 -113950265 + (A)n Simple_repeat Simple_repeat 1 27 0 663 37 0 0 chr1 168243536 168243618 -113950046 + (TGGA)n Simple_repeat Simple_repeat 1 82 0 291 331 86 22 chr1 168243871 168244010 -113949654 - MER5B DNA MER1_type -30 148 1 1216 212 148 44 chr1 168245182 168245587 -113948077 + LTR16A1 LTR ERVL 1 447 -10 230 291 12 0 chr1 168245723 168245809 -113947855 + MIR SINE MIR 9 95 -167 3752 106 13 17 chr1 168246079 168246608 -113947056 - MER1A DNA MER1_type 0 527 1 264 311 249 9 chr1 168246864 168247089 -113946575 + L2 LINE L2 2989 3267 -5 441 187 39 20 chr1 168247223 168247339 -113946325 + MLT1H LTR MaLR 60 177 -394 604 239 119 0 chr1 168248445 168248604 -113945060 - MER5B DNA MER1_type 0 178 1 356 258 32 24 chr1 168248708 168248832 -113944832 - MIR SINE MIR -34 228 104 841 219 151 45 chr1 168250587 168250898 -113942766 - MER2 DNA MER2_type 0 344 1 2559 266 131 37 chr1 168251150 168251542 -113942122 - L1ME LINE L1 -664 5500 5146 1741 180 0 26 chr1 168251542 168251847 -113941817 + AluJo SINE Alu 1 297 -15 2559 266 131 37 chr1 168251847 168251958 -113941706 - L1ME LINE L1 -1018 5146 5047 2236 97 7 0 chr1 168251958 168252237 -113941427 - AluSg SINE Alu -13 297 17 2559 266 131 37 chr1 168252237 168252792 -113940872 - L1ME LINE L1 -1117 5047 4546 2078 128 3 13 chr1 168252792 168253090 -113940574 + AluSx SINE Alu 1 295 -17 2559 266 131 37 chr1 168253090 168253310 -113940354 - L1ME LINE L1 -1618 4546 4348 2358 106 3 0 chr1 168253310 168253611 -113940053 + AluSp SINE Alu 1 302 -11 2559 266 131 37 chr1 168253611 168254262 -113939402 - L1ME LINE L1 -1816 4348 3384 550 204 10 0 chr1 168254502 168254605 -113939059 + MER3 DNA MER1_type 2 105 -104 * 1290 221 14 11 chr1 168254596 168254872 -113938792 + MLT1A2 LTR MaLR 87 363 -11 23 0 0 0 chr1 168255229 168255252 -113938412 + AT_rich Low_complexity Low_complexity 1 23 0 422 217 9 0 chr1 168256260 168256375 -113937289 + CT-rich Low_complexity Low_complexity 1 116 0 296 290 41 48 chr1 168256391 168256536 -113937128 + MIR SINE MIR 100 243 -19 196 280 67 40 chr1 168256611 168256686 -113936978 + L2 LINE L2 3187 3263 -9 4940 127 43 10 chr1 168256800 168257587 -113936077 + L1PA16 LINE L1 5345 6157 -9 221 234 21 0 chr1 168257689 168257736 -113935928 + MIR SINE MIR 198 245 -17 243 277 50 20 chr1 168258243 168258344 -113935320 + MLT1K LTR MaLR 13 116 -472 722 249 24 71 chr1 168258470 168258723 -113934941 + MLT1K LTR MaLR 330 570 -18 1648 200 67 65 chr1 168258817 168259307 -113934357 + MLT1D LTR MaLR 6 496 -9 293 226 57 88 chr1 168259833 168259992 -113933672 - MIR SINE MIR -78 184 31 323 297 211 10 chr1 168260455 168260664 -113933000 - MIR SINE MIR 0 262 12 1432 151 56 102 chr1 168260699 168261004 -113932660 + AluJo SINE Alu 1 291 -21 216 0 0 0 chr1 168262111 168262135 -113931529 + (T)n Simple_repeat Simple_repeat 1 24 0 630 297 172 48 chr1 168262266 168263436 -113930228 - L2 LINE L2 -4 3268 1959 562 301 76 56 chr1 168263705 168264137 -113929527 + MLT1K LTR MaLR 84 524 -64 260 337 201 15 chr1 168264273 168264472 -113929192 + L2 LINE L2 3031 3266 -6 5043 134 58 11 chr1 168265371 168266154 -113927510 + L1MB1 LINE L1 5116 5958 -210 1753 166 55 66 chr1 168266154 168266329 -113927335 + THE1C LTR MaLR 1 176 -199 2346 74 3 32 chr1 168266329 168266639 -113927025 + AluSq SINE Alu 1 301 -12 1753 166 55 66 chr1 168266639 168266842 -113926822 + THE1C LTR MaLR 176 375 0 5043 134 58 11 chr1 168266842 168267063 -113926601 + L1MB1 LINE L1 5958 6167 -1 363 263 19 38 chr1 168267795 168267955 -113925709 + (CATATA)n Simple_repeat Simple_repeat 3 159 0 266 336 0 0 chr1 168268934 168269044 -113924620 - HAL1b LINE L1 -29 1319 1210 572 187 93 0 chr1 168269171 168269278 -113924386 + MIR SINE MIR 19 135 -127 189 0 0 0 chr1 168269699 168269720 -113923944 + (TG)n Simple_repeat Simple_repeat 2 22 0 203 194 0 0 chr1 168269720 168269756 -113923908 + (TA)n Simple_repeat Simple_repeat 2 37 0 2151 132 0 0 chr1 168269793 168270096 -113923568 + AluSx SINE Alu 1 303 -9 2346 96 0 3 chr1 168270486 168270787 -113922877 - AluSc SINE Alu -9 300 1 198 0 0 0 chr1 168272600 168272622 -113921042 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 2255 71 0 0 chr1 168272622 168272905 -113920759 - L1PA8 LINE L1 -24 6148 5866 367 250 125 0 chr1 168273278 168273382 -113920282 + L2 LINE L2 3181 3297 -16 316 264 127 0 chr1 168273387 168273497 -113920167 + L2 LINE L2 2680 2803 -511 362 337 49 71 chr1 168273554 168273922 -113919742 + L2 LINE L2 2913 3272 0 281 280 48 95 chr1 168274130 168274298 -113919366 + MIR SINE MIR 103 262 0 209 269 75 60 chr1 168275055 168275122 -113918542 - L2 LINE L2 -61 3211 3144 2078 90 7 0 chr1 168275166 168275443 -113918221 - AluSp SINE Alu -2 311 33 2359 87 7 0 chr1 168275521 168275830 -113917834 - AluSp SINE Alu -2 311 1 2882 7 0 0 chr1 168276045 168276354 -113917310 + AluY SINE Alu 1 309 -2 379 319 43 0 chr1 168276466 168276582 -113917082 + L2 LINE L2 3142 3262 -10 21 0 0 0 chr1 168278585 168278606 -113915058 + AT_rich Low_complexity Low_complexity 1 21 0 320 320 33 8 chr1 168278925 168279047 -113914617 - MIR SINE MIR -71 191 67 1269 162 5 0 chr1 168279068 168279266 -113914398 - MER58A DNA MER1_type 0 224 26 1633 168 7 28 chr1 168280018 168280309 -113913355 - AluJo SINE Alu -27 285 1 243 218 0 0 chr1 168280316 168280371 -113913293 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 2036 145 10 3 chr1 168280379 168280689 -113912975 - AluJb SINE Alu 0 312 1 2689 55 0 0 chr1 168280877 168281188 -113912476 + AluY SINE Alu 1 311 0 231 157 0 0 chr1 168282243 168282294 -113911370 + T-rich Low_complexity Low_complexity 1 51 0 1282 175 85 0 chr1 168282475 168282698 -113910966 - Tigger3(Golem) DNA MER2_type -1 3028 2787 295 279 77 30 chr1 168282699 168282932 -113910732 - L1MEd LINE L1 -5029 1090 847 2616 96 6 3 chr1 168283429 168283772 -113909892 + L1PA10 LINE L1 5820 6163 -5 21 36 0 0 chr1 168284662 168284690 -113908974 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chr1 168285116 168285174 -113908490 + AT_rich Low_complexity Low_complexity 1 58 0 1358 263 62 19 chr1 168285614 168286036 -113907628 - MLT1J1 LTR MaLR -4 442 3 576 273 31 35 chr1 168286982 168287228 -113906436 + MIR SINE MIR 1 247 -15 1999 240 108 21 chr1 168287371 168287945 -113905719 + MLT1E3 LTR MaLR 1 624 0 1875 116 18 25 chr1 168288625 168288910 -113904754 - AluSx SINE Alu -9 303 21 243 371 40 8 chr1 168289066 168289190 -113904474 + MIR SINE MIR 15 142 -120 1642 210 118 126 chr1 168289349 168290131 -113903533 + LTR28 LTR ERV1 1 972 -48 510 232 23 11 chr1 168290168 168290302 -113903362 + LTR28 LTR ERV1 688 1020 0 299 376 157 11 chr1 168290820 168291107 -113902557 + L2 LINE L2 2932 3260 -12 707 288 111 31 chr1 168291110 168291530 -113902134 + L1ME4a LINE L1 5369 5821 -343 255 265 20 29 chr1 168291660 168291762 -113901902 + L1ME4a LINE L1 5968 6068 -53 3512 257 89 64 chr1 168292151 168293800 -113899864 - HAL1 LINE L1 0 2507 901 925 146 15 0 chr1 168293800 168293930 -113899734 + FLAM_C SINE Alu 1 132 -1 3512 257 89 64 chr1 168293930 168293995 -113899669 - HAL1 LINE L1 -1606 901 839 192 40 0 0 chr1 168293995 168294020 -113899644 + (CAAG)n Simple_repeat Simple_repeat 1 25 0 3512 257 89 64 chr1 168294020 168294265 -113899399 - HAL1 LINE L1 -1668 839 498 260 281 94 0 chr1 168294241 168294412 -113899252 - L1MEc LINE L1 -4847 1480 1294 * 481 296 36 36 chr1 168294490 168294767 -113898897 - L1MEc LINE L1 -5020 1099 823 413 279 177 49 chr1 168296110 168296336 -113897328 - MIR SINE MIR -2 260 6 180 77 0 0 chr1 168297421 168297447 -113896217 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 5617 130 22 7 chr1 168297695 168298564 -113895100 - L1MA5 LINE L1 0 6300 5419 1858 119 45 0 chr1 168298609 168298877 -113894787 + L1PA15 LINE L1 5883 6162 -3 396 247 129 59 chr1 168299689 168299973 -113893691 + L1ME3A LINE L1 805 1068 -5051 181 0 69 0 chr1 168299973 168300002 -113893662 + (TA)n Simple_repeat Simple_repeat 1 31 0 396 247 129 59 chr1 168300002 168300013 -113893651 + L1ME3A LINE L1 1068 1077 -5042 273 29 0 0 chr1 168300013 168300047 -113893617 + (TG)n Simple_repeat Simple_repeat 2 35 0 396 247 129 59 chr1 168300047 168300123 -113893541 + L1ME3A LINE L1 1077 1203 -4916 336 269 66 46 chr1 168300153 168300350 -113893314 + L1ME3A LINE L1 1293 1499 -4636 1409 118 9 0 chr1 168300485 168300696 -113892968 - L1MC1 LINE L1 -281 6052 5840 907 282 114 27 chr1 168300940 168301350 -113892314 + L1ME3A LINE L1 3575 4047 -2082 2452 77 0 0 chr1 168301350 168301661 -113892003 + AluY SINE Alu 1 311 0 907 282 114 27 chr1 168301661 168301800 -113891864 + L1ME3A LINE L1 4047 4172 -1957 654 272 12 6 chr1 168302057 168302226 -113891438 + MIR SINE MIR 72 241 -21 440 313 92 23 chr1 168302238 168302500 -113891164 + L1ME3A LINE L1 4731 5010 -1119 1853 142 36 3 chr1 168302557 168302901 -113890763 + AluJb SINE Alu 1 354 0 657 286 95 30 chr1 168303062 168303586 -113890078 + L1ME3A LINE L1 5366 5923 -230 25 31 0 0 chr1 168303618 168303650 -113890014 + AT_rich Low_complexity Low_complexity 1 32 0 411 250 186 6 chr1 168305144 168305316 -113888348 + MIR SINE MIR 7 209 -53 189 0 0 0 chr1 168306087 168306108 -113887556 + (T)n Simple_repeat Simple_repeat 1 21 0 25 51 0 0 chr1 168306277 168306316 -113887348 + AT_rich Low_complexity Low_complexity 1 39 0 570 115 0 0 chr1 168306961 168307048 -113886616 - AluS SINE Alu -3 306 220 7906 9 0 6 chr1 168307619 168308598 -113885066 + L1PA2 LINE L1 5206 6155 0 2049 148 36 25 chr1 168308709 168309102 -113884562 + Tigger2a DNA MER2_type 1 397 -37 1561 204 28 3 chr1 168309102 168309465 -113884199 - L1P LINE L1 -987 5159 4788 1342 94 10 3 chr1 168309465 168309759 -113883905 + L1PA15 LINE L1 5820 6161 -4 411 214 0 0 chr1 168309759 168309829 -113883835 + Tigger2a DNA MER2_type 375 444 0 221 315 33 22 chr1 168310925 168311017 -113882647 + MIR SINE MIR 7 99 -163 283 244 168 17 chr1 168311019 168311138 -113882526 + MER91A DNA MER1_type 33 169 -27 275 244 0 170 chr1 168311670 168311805 -113881859 - MER5A DNA MER1_type 0 189 78 234 0 0 0 chr1 168311819 168311845 -113881819 + (TG)n Simple_repeat Simple_repeat 2 27 0 225 0 0 0 chr1 168311846 168311871 -113881793 + (GA)n Simple_repeat Simple_repeat 2 26 0 273 321 98 19 chr1 168312541 168312756 -113880908 + L2 LINE L2 2745 2976 -338 570 209 184 10 chr1 168313259 168313460 -113880204 - MER96B DNA MER1_type? -181 236 1 683 346 125 27 chr1 168313577 168314170 -113879494 - L3 LINE CR1 -224 1353 703 478 302 20 20 chr1 168315494 168315643 -113878021 + MIR SINE MIR 2 150 -112 246 286 0 0 chr1 168316629 168316685 -113876979 - MIR SINE MIR -159 103 48 182 36 0 36 chr1 168318546 168318574 -113875090 + (CAA)n Simple_repeat Simple_repeat 1 27 0 205 238 0 0 chr1 168319659 168319701 -113873963 - L2 LINE L2 0 3313 3272 649 88 20 0 chr1 168320182 168320284 -113873380 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 2301 98 0 32 chr1 168320284 168320599 -113873065 - AluSx SINE Alu -7 305 1 506 280 44 33 chr1 168321244 168321515 -113872149 + MER89-int LTR ERV1 173 446 -4201 303 269 32 21 chr1 168323043 168323136 -113870528 + MER89-int LTR ERV1 5232 5325 -1476 1979 94 25 7 chr1 168324372 168324673 -113868991 + AluSx SINE Alu 1 306 0 213 39 0 0 chr1 168324679 168324705 -113868959 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 377 153 35 0 chr1 168326161 168326246 -113867418 - Charlie5 DNA MER1_type -64 2548 2461 574 315 59 46 chr1 168326575 168327103 -113866561 - L1 LINE L1 -743 5403 4881 319 301 64 10 chr1 168327307 168327603 -113866061 - L1 LINE L1 -1721 4425 4114 461 307 139 24 chr1 168327788 168328459 -113865205 - L1 LINE L1 -2122 4024 3277 1935 164 0 3 chr1 168328464 168328774 -113864890 - AluJo SINE Alu -3 309 1 1232 275 17 9 chr1 168328811 168329160 -113864504 + MLT1J LTR MaLR 4 355 -156 257 250 19 30 chr1 168329174 168329298 -113864366 - L1MEd LINE L1 -4908 1726 1526 312 253 0 32 chr1 168329349 168329444 -113864220 - L1MEd LINE L1 -5004 1630 1539 308 238 50 50 chr1 168330390 168330491 -113863173 + MIR3 SINE MIR 62 162 -46 1573 194 66 74 chr1 168330621 168331121 -113862543 + MLT1D LTR MaLR 5 500 -5 1594 159 37 16 chr1 168332795 168333116 -113860548 - L1MB8 LINE L1 0 6414 6087 352 122 2 0 chr1 168333149 168333212 -113860452 + L1MB8 LINE L1 5839 5901 -277 1490 153 112 55 chr1 168333219 168333566 -113860098 - L1MB8 LINE L1 -324 6096 5730 1472 204 29 10 chr1 168333567 168333876 -113859788 + Tigger7 DNA MER2_type 1 315 -2172 1085 189 44 33 chr1 168333919 168334346 -113859318 - L1MB8 LINE L1 -689 5727 5293 2303 111 0 7 chr1 168334346 168334652 -113859012 - AluSx SINE Alu -8 304 1 1085 189 44 33 chr1 168334652 168334722 -113858942 - L1MB8 LINE L1 -1123 5293 5225 * 2651 205 36 14 chr1 168334719 168335407 -113858257 - L1MB8 LINE L1 -2156 4226 3524 1834 183 38 77 chr1 168335405 168336118 -113857546 - L1MB8 LINE L1 -3476 2906 2215 * 1805 150 83 3 chr1 168337175 168337536 -113856128 - MLT1B LTR MaLR 0 390 1 996 213 63 17 chr1 168340189 168340428 -113853236 + MIR SINE MIR 1 250 -12 1934 153 0 23 chr1 168340452 168340760 -113852904 - AluJo SINE Alu -5 307 7 267 289 0 21 chr1 168342346 168342443 -113851221 + MLT1J1 LTR MaLR 346 440 -6 220 231 0 19 chr1 168342443 168342495 -113851169 + MIR SINE MIR 110 160 -102 1985 131 3 0 chr1 168342538 168342820 -113850844 - AluSx SINE Alu -2 310 28 241 264 14 14 chr1 168342824 168342896 -113850768 + MIR SINE MIR 166 237 -25 246 105 0 0 chr1 168342996 168343034 -113850630 + (CA)n Simple_repeat Simple_repeat 1 38 0 7131 144 22 2 chr1 168344075 168345278 -113848386 - Ricksha_b DNA DNA -25 1229 4 359 210 134 69 chr1 168345758 168346063 -113847601 - L1ME4a LINE L1 -72 6049 5725 360 247 81 78 chr1 168346124 168346444 -113847220 - L1MB8 LINE L1 -4785 1616 1279 402 251 78 59 chr1 168346445 168346664 -113847000 - L1MEd LINE L1 -5035 1084 862 243 254 75 15 chr1 168346665 168346799 -113846865 - L1MEd LINE L1 -5455 855 714 235 200 0 0 chr1 168346910 168346950 -113846714 + MER105 DNA DNA 2 41 -163 639 258 0 0 chr1 168346951 168347106 -113846558 - MER105 DNA DNA -43 161 7 264 283 38 38 chr1 168347519 168347678 -113845986 - L1ME4a LINE L1 -501 5620 5462 2600 43 0 3 chr1 168348161 168348466 -113845198 - AluY SINE Alu -7 304 1 21 0 0 0 chr1 168348696 168348717 -113844947 + AT_rich Low_complexity Low_complexity 1 21 0 916 161 6 25 chr1 168349191 168349497 -113844167 + MLT1A1 LTR MaLR 1 365 0 952 286 74 49 chr1 168349518 168349690 -113843974 + L1ME LINE L1 4111 4277 -1893 1747 154 17 24 chr1 168349690 168349988 -113843676 + AluJo SINE Alu 11 306 -6 952 286 74 49 chr1 168349988 168350655 -113843009 + L1ME LINE L1 4277 4926 -1244 1768 191 86 51 chr1 168350655 168351143 -113842521 + MLT1D LTR MaLR 1 505 0 952 286 74 49 chr1 168351143 168351957 -113841707 + L1ME LINE L1 4926 5804 -366 21 82 0 0 chr1 168352274 168352323 -113841341 + AT_rich Low_complexity Low_complexity 1 49 0 229 204 20 0 chr1 168352713 168352762 -113840902 - L1MEd LINE L1 -5509 610 561 313 289 19 19 chr1 168353202 168353306 -113840358 + MIR SINE MIR 94 197 -65 604 128 160 0 chr1 168353472 168353597 -113840067 + MLT1D LTR MaLR 1 145 -360 1330 195 12 66 chr1 168353597 168354022 -113839642 - L1M4 LINE L1 -1383 4763 4362 346 372 0 14 chr1 168354078 168354226 -113839438 - MER5A DNA MER1_type -37 152 7 342 220 89 46 chr1 168354996 168355255 -113838409 + L1MEd LINE L1 824 1093 -5026 241 313 7 73 chr1 168355992 168356142 -113837522 + L2 LINE L2 2731 2870 -444 354 324 34 59 chr1 168356312 168356516 -113837148 + L2 LINE L2 3020 3218 -54 254 111 0 0 chr1 168356805 168356850 -113836814 + L1PA13 LINE L1 5107 5151 -995 3490 29 17 0 chr1 168356850 168357267 -113836397 + L1PA4 LINE L1 5725 6148 -7 22 0 0 0 chr1 168357271 168357293 -113836371 + AT_rich Low_complexity Low_complexity 1 22 0 5577 106 40 1 chr1 168357293 168358255 -113835409 + L1PA13 LINE L1 5152 6144 -19 1334 206 34 124 chr1 168358497 168358597 -113835067 - MLT1D LTR MaLR 0 505 398 541 138 0 0 chr1 168358597 168358684 -113834980 + L1MA5A LINE L1 6209 6295 -2 1334 206 34 124 chr1 168358684 168359137 -113834527 - MLT1D LTR MaLR -107 398 2 363 132 53 7 chr1 168360202 168360354 -113833310 + (TA)n Simple_repeat Simple_repeat 2 160 0 714 85 34 17 chr1 168360378 168360554 -113833110 + (TA)n Simple_repeat Simple_repeat 2 180 0 304 278 121 33 chr1 168361021 168361294 -113832370 + HAL1 LINE L1 814 1110 -1397 870 314 58 2 chr1 168361853 168362270 -113831394 + HAL1 LINE L1 1214 1653 -854 676 223 26 31 chr1 168362974 168363167 -113830497 + L1ME1 LINE L1 5970 6161 -5 267 257 47 54 chr1 168363194 168363342 -113830322 + HAL1 LINE L1 2238 2384 -123 1478 214 116 32 chr1 168363501 168363627 -113830037 - L1MC4 LINE L1 -333 7709 7595 1920 179 3 0 chr1 168363627 168363934 -113829730 - AluJo SINE Alu -4 308 1 1478 214 116 32 chr1 168363934 168364307 -113829357 - L1MC4 LINE L1 -447 7595 7168 2097 226 66 15 chr1 168364314 168364902 -113828762 - L1MC4 LINE L1 -981 7061 6444 2418 111 13 26 chr1 168365114 168365494 -113828170 + THE1C LTR MaLR 1 375 0 203 191 24 0 chr1 168365639 168365681 -113827983 + (CA)n Simple_repeat Simple_repeat 1 43 0 3692 134 31 55 chr1 168365934 168366709 -113826955 - L1MA9 LINE L1 -35 6277 5522 216 320 90 34 chr1 168366909 168367087 -113826577 - L2 LINE L2 -15 3298 3111 200 336 93 0 chr1 168367412 168367519 -113826145 + MIR SINE MIR 133 249 -13 252 81 0 0 chr1 168368476 168368513 -113825151 + L2 LINE L2 3269 3305 -8 207 139 0 0 chr1 168370722 168370758 -113822906 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 513 237 153 11 chr1 168371029 168371206 -113822458 - MIR SINE MIR -5 257 56 2259 123 34 22 chr1 168373679 168374037 -113819627 + THE1B LTR MaLR 1 362 -2 309 309 94 60 chr1 168375115 168375413 -113818251 + L2 LINE L2 2059 2366 -948 332 330 55 0 chr1 168375568 168375677 -113817987 - MIR SINE MIR -56 152 38 201 443 0 0 chr1 168376769 168376891 -113816773 + L2 LINE L2 2934 3055 -217 435 275 0 0 chr1 168378299 168378419 -113815245 - MER103 DNA DNA -46 120 1 950 103 7 0 chr1 168378622 168378758 -113814906 - AluY SINE Alu 0 311 175 186 300 0 0 chr1 168378799 168378849 -113814815 + MIR SINE MIR 187 236 -26 200 328 15 0 chr1 168378895 168378962 -113814702 + MIR SINE MIR 13 80 -182 * 385 314 85 0 chr1 168378952 168379070 -113814594 + L2 LINE L2 3144 3271 -1 627 203 187 21 chr1 168379076 168379263 -113814401 + MER20 DNA MER1_type 2 219 0 262 255 63 3 chr1 168379299 168379386 -113814278 + MIR SINE MIR 72 160 -63 421 319 66 26 chr1 168380287 168380513 -113813151 + MIR SINE MIR 22 256 -6 364 322 33 22 chr1 168381141 168381321 -113812343 + L1ME4a LINE L1 5594 5775 -346 533 277 68 38 chr1 168381332 168381567 -113812097 - MIR SINE MIR -19 243 2 360 248 84 35 chr1 168381593 168381903 -113811761 + L1ME4a LINE L1 5796 6120 -1 2220 108 0 13 chr1 168386206 168386520 -113807144 + AluSg SINE Alu 1 310 0 399 21 0 0 chr1 168387612 168387660 -113806004 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 267 31 0 0 chr1 168387659 168387691 -113805973 + (CA)n Simple_repeat Simple_repeat 2 33 0 * 26 0 0 0 chr1 168387741 168387767 -113805897 + AT_rich Low_complexity Low_complexity 1 26 0 273 223 79 0 chr1 168388394 168388483 -113805181 - L1MC/D LINE L1 -843 5448 5371 2254 115 3 3 chr1 168388543 168388855 -113804809 + AluSp SINE Alu 2 313 0 619 300 81 73 chr1 168388985 168389505 -113804159 + L1ME LINE L1 889 1412 -5004 595 310 36 7 chr1 168389525 168389874 -113803790 + L1ME LINE L1 1265 1632 -4794 1035 292 50 14 chr1 168389875 168390494 -113803170 - L1MEc LINE L1 -4717 1679 1039 431 245 84 37 chr1 168390492 168390815 -113802849 + L1 LINE L1 3645 3982 -2164 * 487 320 91 51 chr1 168390815 168391246 -113802418 + L1ME LINE L1 5013 5460 -966 409 306 62 29 chr1 168391326 168391641 -113802023 + L1ME LINE L1 5679 6003 -447 440 215 184 37 chr1 168392971 168393134 -113800530 + MIR3 SINE MIR 3 189 -19 2090 110 35 0 chr1 168395003 168395285 -113798379 - AluSc SINE Alu -17 292 1 509 299 11 70 chr1 168395508 168395695 -113797969 + MIR3 SINE MIR 20 195 -13 670 221 103 101 chr1 168395760 168396244 -113797420 - Charlie7 DNA MER1_type -61 2551 2067 3734 272 104 9 chr1 168396285 168398370 -113795294 + L1MEd LINE L1 2411 4692 -1734 3203 195 64 35 chr1 168398348 168398501 -113795163 + L1ME2 LINE L1 5391 5538 -906 * 2137 117 21 0 chr1 168398501 168398791 -113794873 - AluSg SINE Alu -14 296 1 3203 195 64 35 chr1 168398791 168399204 -113794460 + L1ME2 LINE L1 5538 5938 -506 219 69 0 0 chr1 168399204 168399233 -113794431 + (CA)n Simple_repeat Simple_repeat 1 29 0 3203 195 64 35 chr1 168399233 168399253 -113794411 + L1ME2 LINE L1 5938 5956 -488 1826 136 0 4 chr1 168399253 168399525 -113794139 - AluSx SINE Alu -5 307 37 3203 195 64 35 chr1 168399525 168399954 -113793710 + L1ME2 LINE L1 5956 6435 -9 310 216 88 0 chr1 168400047 168400149 -113793515 + L1MEd LINE L1 4695 4805 -1621 185 62 0 31 chr1 168400299 168400331 -113793333 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1647 174 29 4 chr1 168400334 168400609 -113793055 - AluJo SINE Alu -30 282 1 421 244 101 27 chr1 168400826 168401191 -113792473 + L1MEd LINE L1 992 1383 -5033 1172 214 46 29 chr1 168401276 168401907 -113791757 + L1MEd LINE L1 5212 5858 -586 27 49 0 0 chr1 168403107 168403148 -113790516 + AT_rich Low_complexity Low_complexity 1 41 0 1720 95 0 4 chr1 168403148 168403389 -113790275 - L1PB1 LINE L1 -1 6150 5911 261 281 20 48 chr1 168404058 168404204 -113789460 - LTR33 LTR ERVL -8 513 372 554 238 53 60 chr1 168404249 168404530 -113789134 - LTR33 LTR ERVL -233 288 10 283 255 131 88 chr1 168506550 168507198 -113686466 - L1MC5 LINE L1 -26 7935 7260 504 246 139 16 chr1 168507319 168507563 -113686101 - L1MC5 LINE L1 -733 7228 6955 310 283 46 64 chr1 168507587 168507806 -113685858 - L1MC4 LINE L1 -980 7062 6848 5899 169 74 17 chr1 168507840 168509131 -113684533 - Charlie1a DNA MER1_type 0 1455 92 1734 210 68 5 chr1 168509170 168509555 -113684109 - MER41B LTR ERV1 -36 599 191 301 203 253 13 chr1 168509600 168509679 -113683985 - Charlie1a DNA MER1_type -1356 99 2 304 352 62 28 chr1 168509862 168510041 -113683623 - HAL1b LINE L1 -1163 185 1 2651 150 10 0 chr1 168510085 168510484 -113683180 - MER57A LTR ERV1 0 403 1 800 60 0 0 chr1 168510614 168510714 -113682950 - AluY SINE Alu -13 298 199 336 139 46 26 chr1 168511071 168511147 -113682517 - L1ME3A LINE L1 -270 6691 6613 312 222 0 0 chr1 168511208 168511271 -113682393 - L1ME3A LINE L1 -462 6503 6441 1270 216 104 32 chr1 168511271 168511661 -113682003 - MLT1C LTR MaLR 0 467 1 428 248 137 0 chr1 168511661 168511778 -113681886 - L1ME3A LINE L1 -520 6445 6313 3017 210 32 24 chr1 168511804 168512519 -113681145 - L1MC4 LINE L1 -2 8040 7320 2159 279 31 47 chr1 168512516 168513473 -113680191 - L1ME LINE L1 -5109 1307 366 * 309 255 20 0 chr1 168514176 168514274 -113679390 - L1MC4 LINE L1 0 8042 7943 255 317 21 62 chr1 168514649 168514794 -113678870 + L2 LINE L2 2986 3124 -189 3250 194 45 72 chr1 168514821 168515186 -113678478 - L1ME3A LINE L1 -1951 4990 4617 830 141 8 16 chr1 168515186 168515314 -113678350 - FLAM_C SINE Alu -5 128 2 3250 194 45 72 chr1 168515314 168515921 -113677743 - L1ME3A LINE L1 -2324 4617 4044 516 175 12 38 chr1 168515921 168516081 -113677583 + CT-rich Low_complexity Low_complexity 4 159 0 892 225 101 3 chr1 168516101 168516408 -113677256 - L1ME3A LINE L1 -2887 4054 3718 * 2064 255 94 52 chr1 168516402 168517938 -113675726 - L1MCc LINE L1 -4034 3088 1216 2290 98 0 22 chr1 168517938 168518254 -113675410 - AluSq SINE Alu -4 309 1 2064 255 94 52 chr1 168518254 168518683 -113674981 - L1MCc LINE L1 -5906 1216 807 315 289 21 21 chr1 168518944 168519041 -113674623 - L1MCc LINE L1 -5984 439 343 229 250 29 0 chr1 168519209 168519277 -113674387 - L1ME LINE L1 -6283 143 74 292 221 163 12 chr1 168519399 168519485 -113674179 - MER94 DNA DNA -34 100 2 708 243 53 92 chr1 168519640 168519881 -113673783 + L1MC5 LINE L1 7517 7766 -195 2252 109 3 0 chr1 168519881 168520184 -113673480 - AluSp SINE Alu -9 304 1 708 243 53 92 chr1 168520184 168520362 -113673302 + L1MC5 LINE L1 7766 7921 -40 1584 166 4 0 chr1 168520362 168520615 -113673049 - AluJo SINE Alu -20 292 39 708 243 53 92 chr1 168520615 168520627 -113673037 + L1MC5 LINE L1 7921 7932 -29 213 292 67 33 chr1 168521071 168521191 -113672473 + L2 LINE L2 3190 3313 0 4212 123 41 2 chr1 168522322 168522931 -113670733 - MER41B LTR ERV1 -2 633 1 202 283 50 17 chr1 168523538 168523598 -113670066 - L2 LINE L2 -5 3267 3206 2284 177 100 16 chr1 168523640 168524092 -113669572 - MLT1D LTR MaLR -7 498 9 291 280 210 19 chr1 168524112 168524269 -113669395 + MIR SINE MIR 64 250 -12 247 369 54 9 chr1 168524296 168524407 -113669257 - L2 LINE L2 -67 3205 3090 2399 82 7 0 chr1 168524600 168524903 -113668761 - AluSg1 SINE Alu -4 305 1 1807 177 3 13 chr1 168525261 168525571 -113668093 - AluJb SINE Alu -5 307 1 615 211 295 9 chr1 168525673 168525900 -113667764 + L2 LINE L2 1939 2230 -1084 1929 208 59 16 chr1 168525919 168526362 -113667302 - MLT1D LTR MaLR -43 462 1 2863 268 47 18 chr1 168526366 168527403 -113666261 + L2 LINE L2 2234 3313 0 492 191 135 0 chr1 168527904 168527993 -113665671 - FLAM_A SINE Alu -38 104 4 693 229 128 46 chr1 168528065 168528410 -113665254 + L1MC5 LINE L1 6749 7121 -840 2601 187 98 33 chr1 168528484 168529473 -113664191 - L1MC4 LINE L1 -140 7902 6695 198 118 0 0 chr1 168529474 168529508 -113664156 + (TG)n Simple_repeat Simple_repeat 2 35 0 364 276 38 43 chr1 168529510 168529720 -113663944 + L1MC5 LINE L1 7537 7745 -216 201 147 0 0 chr1 168529793 168529827 -113663837 + (CATA)n Simple_repeat Simple_repeat 3 36 0 485 246 145 42 chr1 168531403 168531764 -113661900 - L1ME4a LINE L1 -140 5981 5579 1635 178 77 30 chr1 168531915 168532253 -113661411 + MLT1A1 LTR MaLR 1 354 -11 386 244 44 59 chr1 168532263 168532398 -113661266 - MIR SINE MIR -96 166 34 1268 137 0 0 chr1 168532400 168532582 -113661082 - AluSx SINE Alu 0 312 131 225 109 43 0 chr1 168532604 168532650 -113661014 - L1MC3 LINE L1 -1139 6646 6599 1125 124 0 0 chr1 168532664 168532901 -113660763 + (TA)n Simple_repeat Simple_repeat 1 237 0 864 152 8 0 chr1 168532919 168533051 -113660613 - AluSx SINE Alu -180 133 1 446 212 441 5 chr1 168533231 168533453 -113660211 + L2 LINE L2 2157 2475 -839 2049 139 7 0 chr1 168533904 168534206 -113659458 - AluSx SINE Alu -8 304 1 493 239 0 0 chr1 168534611 168534703 -113658961 + MER81 DNA DNA 22 113 -1 252 178 22 0 chr1 168535964 168536009 -113657655 - MIR SINE MIR -1 261 216 1259 251 102 18 chr1 168536019 168536461 -113657203 + L1MB8 LINE L1 5380 5858 -320 326 225 0 14 chr1 168536461 168536532 -113657132 - MIR SINE MIR -72 190 121 425 254 30 119 chr1 168536905 168537106 -113656558 - MIR SINE MIR -27 235 53 268 209 27 55 chr1 168537814 168537924 -113655740 + L2 LINE L2 2594 2700 -614 274 347 46 92 chr1 168537945 168538334 -113655330 + L2 LINE L2 2897 3267 -5 790 139 0 35 chr1 168538398 168538513 -113655151 + FLAM_C SINE Alu 5 115 -28 309 51 0 0 chr1 168538513 168538552 -113655112 + (CA)n Simple_repeat Simple_repeat 2 40 0 2362 93 0 0 chr1 168538915 168539217 -113654447 - AluSg1 SINE Alu -7 302 1 1374 201 50 3 chr1 168539234 168539517 -113654147 + AluJb SINE Alu 1 296 -16 2267 173 15 11 chr1 168539587 168540016 -113653648 - L1MC2 LINE L1 -73 7704 6137 205 300 132 29 chr1 168540058 168540338 -113653326 + L2 LINE L2 2366 2674 -640 376 186 20 39 chr1 168540831 168540933 -113652731 - MLT1E LTR MaLR -41 552 453 225 94 0 0 chr1 168542098 168542130 -113651534 + (T)n Simple_repeat Simple_repeat 1 32 0 276 306 32 38 chr1 168542773 168542895 -113650769 - MIR SINE MIR -63 145 42 231 333 73 8 chr1 168542890 168543013 -113650651 + L2 LINE L2 3183 3313 0 * 1998 169 0 0 chr1 168544710 168545012 -113648652 - AluSx SINE Alu -10 302 1 268 173 0 19 chr1 168545120 168545172 -113648492 - MER69 DNA AcHobo 0 2526 2476 * 823 294 37 15 chr1 168545171 168545443 -113648221 - MER69 DNA AcHobo -1823 703 426 513 249 150 0 chr1 168545964 168546137 -113647527 + MIR SINE MIR 64 262 0 211 254 264 55 chr1 168546418 168546725 -113646939 + L2 LINE L2 2864 3234 -79 354 229 0 0 chr1 168546737 168546807 -113646857 + MER106B DNA MER1_type 3 72 -987 23 24 0 24 chr1 168546811 168546839 -113646825 + AT_rich Low_complexity Low_complexity 1 29 -11 2000 138 0 3 chr1 168546839 168547129 -113646535 + AluSx SINE Alu 1 289 -23 23 24 0 24 chr1 168547129 168547141 -113646523 + AT_rich Low_complexity Low_complexity 29 40 0 470 184 163 28 chr1 168547159 168547300 -113646364 + MER106B DNA MER1_type 892 1051 -8 361 318 53 30 chr1 168547366 168547498 -113646166 - MIR3 SINE MIR -67 141 7 1561 225 34 2 chr1 168547752 168548186 -113645478 - MER119 DNA MER1_type -35 548 4 632 196 137 0 chr1 168548590 168548743 -113644921 - MLT1D LTR MaLR 0 505 332 2871 151 23 6 chr1 168548772 168549243 -113644421 + MER66B LTR ERV1 8 486 0 593 248 139 50 chr1 168549244 168549546 -113644118 - MLT1D LTR MaLR -176 329 1 257 335 61 2 chr1 168550051 168550252 -113643412 + L3 LINE CR1 1161 1418 -159 412 304 35 0 chr1 168550303 168550418 -113643246 + L2 LINE L2 3153 3271 -1 1873 154 0 3 chr1 168550568 168550853 -113642811 - AluJb SINE Alu -28 284 1 423 221 139 9 chr1 168550855 168550982 -113642682 - MIR SINE MIR -61 147 57 1650 176 15 106 chr1 168552468 168552865 -113640799 - MLT1A1 LTR MaLR -4 361 1 2108 86 0 73 chr1 168553294 168553608 -113640056 - AluSq SINE Alu -22 291 1 1425 199 33 3 chr1 168553800 168554107 -113639557 - MER33 DNA MER1_type 0 324 9 314 256 144 0 chr1 168554119 168554209 -113639455 + L2 LINE L2 3189 3291 -22 241 271 23 93 chr1 168554350 168554479 -113639185 + L2 LINE L2 3187 3306 -7 * 479 261 63 0 chr1 168554448 168554559 -113639105 - L2 LINE L2 0 3272 3155 254 326 96 17 chr1 168554705 168554883 -113638781 + L2 LINE L2 2875 3066 -247 196 283 0 17 chr1 168555016 168555076 -113638588 + L2 LINE L2 3255 3313 0 2292 211 106 33 chr1 168556106 168556167 -113637497 - L1ME1 LINE L1 -30 6136 6081 2687 106 17 3 chr1 168556167 168556526 -113637138 - THE1B LTR MaLR 0 364 1 2292 211 106 33 chr1 168556526 168557041 -113636623 - L1ME1 LINE L1 -85 6081 5459 9923 36 7 0 chr1 168557041 168559017 -113634647 - L1PA5 LINE L1 -8 6146 4161 2292 211 106 33 chr1 168559017 168559166 -113634498 - L1ME1 LINE L1 -707 5459 5322 321 169 0 0 chr1 168559172 168559231 -113634433 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 2705 208 47 57 chr1 168559238 168559304 -113634360 - L1ME1 LINE L1 -899 5247 5182 2355 164 77 0 chr1 168559304 168559732 -113633932 - LOR1b LTR ERV1 0 461 1 2705 208 47 57 chr1 168559732 168560583 -113633081 - L1ME1 LINE L1 -964 5182 4339 2695 139 89 15 chr1 168560720 168561181 -113632483 - LTR42 LTR ERVL 0 495 1 323 117 0 91 chr1 168561472 168561491 -113632173 - MER57A LTR ERV1 0 403 384 2844 3 0 0 chr1 168561491 168561797 -113631867 + AluYa5 SINE Alu 1 306 -5 323 117 0 91 chr1 168561797 168561854 -113631810 - MER57A LTR ERV1 -19 384 334 7153 163 36 8 chr1 168561904 168563587 -113630077 - L1PB2 LINE L1 -1 6150 4377 189 0 0 0 chr1 168563587 168563608 -113630056 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 7153 163 36 8 chr1 168563608 168564239 -113629425 - L1PB2 LINE L1 -1774 4377 3765 2213 137 12 0 chr1 168564239 168564568 -113629096 - MER57A LTR ERV1 -70 333 1 25 0 0 0 chr1 168564700 168564725 -113628939 + AT_rich Low_complexity Low_complexity 1 25 0 401 341 40 6 chr1 168564916 168565089 -113628575 - L1MEd LINE L1 -5494 625 447 307 318 46 23 chr1 168565349 168565522 -113628142 - L1MEd LINE L1 -5933 186 10 326 243 29 39 chr1 168569488 168569595 -113624069 + MER5B DNA MER1_type 15 131 -58 1525 244 63 29 chr1 168569933 168570680 -113622984 - L1ME3 LINE L1 -205 5940 5165 624 118 0 0 chr1 168570680 168570765 -113622899 - AluJ/FLAM SINE Alu -227 85 1 416 216 14 74 chr1 168570891 168571039 -113622625 - L1MC5 LINE L1 -770 7191 7053 438 160 38 0 chr1 168571043 168571149 -113622515 + CT-rich Low_complexity Low_complexity 2 111 0 261 204 19 0 chr1 168571149 168571203 -113622461 - L1MC5 LINE L1 -943 7018 6964 * 473 248 7 46 chr1 168571201 168571354 -113622310 - L1MC4 LINE L1 -1054 6988 6842 562 361 20 33 chr1 168571397 168571699 -113621965 - LTR16C LTR ERVL 0 491 194 897 250 116 66 chr1 168571868 168572733 -113620931 - L1ME3 LINE L1 -1428 4701 3794 712 301 68 25 chr1 168573089 168573853 -113619811 - L1ME3 LINE L1 -4600 1710 914 1213 225 67 83 chr1 168573872 168574392 -113619272 - L1MC4 LINE L1 -1 8041 7530 448 304 36 68 chr1 168574450 168574690 -113618974 - L1ME3 LINE L1 -5267 852 627 2489 57 0 7 chr1 168574690 168574990 -113618674 - AluY SINE Alu -11 300 3 448 304 36 68 chr1 168574990 168575114 -113618550 - L1ME3 LINE L1 -5492 627 500 25 31 0 0 chr1 168575358 168575390 -113618274 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr1 168575444 168575483 -113618181 + AT_rich Low_complexity Low_complexity 1 39 0 3738 136 12 11 chr1 168575671 168576318 -113617346 - L1PA13 LINE L1 0 7601 6954 15803 195 19 7 chr1 168576318 168580007 -113613657 - L1PA13 LINE L1 -1515 6069 2319 429 310 32 38 chr1 168580871 168581216 -113612448 - L1PA13 LINE L1 -7231 350 8 1706 167 0 0 chr1 168582270 168582539 -113611125 - AluJb SINE Alu -14 298 30 422 317 143 14 chr1 168583221 168583508 -113610156 - MLT1K LTR MaLR -180 408 85 840 269 72 46 chr1 168584567 168584872 -113608792 - MLT1K LTR MaLR -119 469 157 565 327 33 70 chr1 168585043 168585373 -113608291 - L2 LINE L2 0 3272 2955 4471 50 0 4 chr1 168585956 168586512 -113607152 - MER41A LTR ERV1 0 554 1 227 330 18 9 chr1 168586645 168586757 -113606907 + L1ME LINE L1 2 114 -5956 2460 201 77 101 chr1 168587055 168587478 -113606186 + L1ME3A LINE L1 5192 5624 -546 2269 169 51 43 chr1 168587478 168587946 -113605718 - MER70A LTR ERVL 0 472 1 2460 201 77 101 chr1 168587946 168588304 -113605360 + L1ME3A LINE L1 5624 5947 -223 1968 116 22 0 chr1 168588304 168588604 -113605060 + AluSq SINE Alu 1 306 0 2460 201 77 101 chr1 168588604 168588814 -113604850 + L1ME3A LINE L1 5947 6161 -9 488 178 0 108 chr1 168589110 168589239 -113604425 - MLT2B1 LTR ERVL -6 514 400 4017 94 4 2 chr1 168589245 168589790 -113603874 - MER41A LTR ERV1 -8 546 1 1851 211 59 21 chr1 168589791 168590180 -113603484 - MLT2B1 LTR ERVL -116 404 1 192 77 0 0 chr1 168591070 168591096 -113602568 + (T)n Simple_repeat Simple_repeat 1 26 0 297 247 0 62 chr1 168591132 168591213 -113602451 - MIR SINE MIR -28 234 159 2176 247 34 30 chr1 168591214 168591748 -113601916 + MLT1F LTR MaLR 1 536 -6 220 208 21 0 chr1 168591770 168591818 -113601846 - MIR SINE MIR -108 154 106 2199 109 0 0 chr1 168591926 168592220 -113601444 - AluSc SINE Alu -15 294 1 228 345 0 3 chr1 168593136 168593255 -113600409 - L2 LINE L2 -4 3268 3112 682 313 80 27 chr1 168593489 168593789 -113599875 - L2 LINE L2 0 3272 2957 458 319 31 35 chr1 168593921 168594147 -113599517 - L2 LINE L2 -573 2741 2517 1021 243 21 0 chr1 168594175 168594414 -113599250 + MIR SINE MIR 15 258 -4 255 288 177 23 chr1 168594412 168594627 -113599037 - L2 LINE L2 -820 2494 2247 * 181 268 84 49 chr1 168594703 168594845 -113598819 - L2 LINE L2 -2064 1250 1104 451 116 0 0 chr1 168594866 168594935 -113598729 - L1PA10 LINE L1 -2 6166 6098 1675 238 87 107 chr1 168595255 168596564 -113597100 - L1MC5 LINE L1 -386 7575 6278 2111 136 0 0 chr1 168596564 168596865 -113596799 - AluY SINE Alu -10 301 1 1675 238 87 107 chr1 168596865 168597159 -113596505 - L1MC5 LINE L1 -1683 6278 5980 379 269 19 0 chr1 168597134 168597242 -113596422 - L1MC5 LINE L1 -2117 5691 5582 * 535 350 57 38 chr1 168597390 168597862 -113595802 - L1M4 LINE L1 -3316 2830 2350 893 182 28 0 chr1 168597899 168598075 -113595589 - LTR52 LTR ERVL 0 421 241 514 180 0 0 chr1 168598077 168598166 -113595498 + FLAM_A SINE Alu 21 109 -33 827 205 35 12 chr1 168598224 168598395 -113595269 - LTR52 LTR ERVL -170 251 77 243 0 0 0 chr1 168598674 168598701 -113594963 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 349 203 13 0 chr1 168599862 168599941 -113593723 - MER116 DNA Mariner 0 80 1 26 30 0 0 chr1 168601197 168601230 -113592434 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr1 168602027 168602056 -113591608 + AT_rich Low_complexity Low_complexity 1 29 0 251 153 85 17 chr1 168602464 168602523 -113591141 - HAL1b LINE L1 -457 891 829 798 268 76 13 chr1 168602567 168602881 -113590783 - HAL1b LINE L1 -701 647 314 456 281 128 0 chr1 168603183 168603347 -113590317 + L2 LINE L2 2550 2734 -580 1954 299 80 23 chr1 168603354 168604622 -113589042 + L2 LINE L2 1964 3308 -5 367 146 115 21 chr1 168604773 168604869 -113588795 + L1ME3A LINE L1 5884 5988 -182 * 1266 243 29 104 chr1 168604854 168605604 -113588060 - L1MCa LINE L1 -1269 5157 4464 * 1333 249 60 60 chr1 168605602 168606397 -113587267 - L1MCa LINE L1 -2295 4131 3337 1557 250 58 0 chr1 168606398 168606746 -113586918 + MER119 DNA MER1_type 1 368 -215 341 284 74 55 chr1 168606782 168607187 -113586477 - L1MCa LINE L1 -4447 1979 1411 289 237 76 76 chr1 168607560 168607678 -113585986 + L2 LINE L2 3194 3311 -2 450 143 0 0 chr1 168607840 168607848 -113585816 + (TA)n Simple_repeat Simple_repeat 1 77 0 334 206 3 0 chr1 168607848 168607917 -113585747 + L1MC4 LINE L1 1995 6983 -1339 2301 98 3 0 chr1 168607917 168608214 -113585450 - AluSp SINE Alu -15 298 1 202 292 0 21 chr1 168609579 168609627 -113584037 + MIR SINE MIR 19 65 -197 2042 104 7 3 chr1 168610028 168610326 -113583338 - AluY SINE Alu -12 299 1 194 114 0 23 chr1 168610372 168610416 -113583248 + (TAA)n Simple_repeat Simple_repeat 1 43 0 320 229 193 0 chr1 168610457 168610540 -113583124 - MIR SINE MIR -98 164 66 397 211 0 13 chr1 168610817 168610973 -113582691 + (TGG)n Simple_repeat Simple_repeat 2 155 0 427 268 7 20 chr1 168610986 168611139 -113582525 + (TGG)n Simple_repeat Simple_repeat 1 151 0 443 211 0 7 chr1 168611153 168611300 -113582364 + (TGG)n Simple_repeat Simple_repeat 1 146 0 291 196 203 38 chr1 168612525 168612658 -113581006 + L1ME2 LINE L1 6000 6154 -10 332 252 20 41 chr1 168612669 168612816 -113580848 + L1MC5 LINE L1 7774 7917 -44 433 233 0 11 chr1 168614396 168614486 -113579178 + L2 LINE L2 3184 3272 0 963 283 112 33 chr1 168614831 168615341 -113578323 - L2 LINE L2 -16 3297 2739 1255 231 138 81 chr1 168615380 168616207 -113577457 - L1MC5 LINE L1 -60 7901 7028 393 216 57 0 chr1 168616212 168616300 -113577364 - L2 LINE L2 -567 2747 2655 4445 119 29 35 chr1 168616390 168616900 -113576764 - L1MA8 LINE L1 -5 6286 5781 1825 146 7 23 chr1 168616900 168617208 -113576456 - AluJb SINE Alu -9 303 1 4445 119 29 35 chr1 168617208 168617463 -113576201 - L1MA8 LINE L1 -510 5781 5526 770 276 78 55 chr1 168617465 168617863 -113575801 + MLT1J LTR MaLR 62 468 -43 673 273 55 47 chr1 168617916 168618012 -113575652 - L2 LINE L2 -687 2627 2533 2186 112 0 3 chr1 168618012 168618316 -113575348 - AluSq SINE Alu -10 303 1 673 273 55 47 chr1 168618316 168618494 -113575170 - L2 LINE L2 -781 2533 2351 34 19 0 19 chr1 168619229 168619252 -113574412 + AT_rich Low_complexity Low_complexity 1 23 -28 1842 137 33 16 chr1 168619252 168619559 -113574105 - AluSx SINE Alu 0 312 1 34 19 0 19 chr1 168619559 168619587 -113574077 + AT_rich Low_complexity Low_complexity 23 51 0 1231 77 35 0 chr1 168619589 168619758 -113573906 - L1MA1 LINE L1 -5 6297 6123 591 301 68 4 chr1 168619808 168620044 -113573620 + L2 LINE L2 2914 3164 -149 238 315 0 0 chr1 168620164 168620218 -113573446 - MIR SINE MIR -4 258 205 507 264 109 31 chr1 168620220 168620605 -113573059 + L2 LINE L2 2575 3060 -253 839 270 216 22 chr1 168620707 168621475 -113572189 - L2 LINE L2 -1 3312 2423 264 224 206 19 chr1 168621625 168621732 -113571932 - L2 LINE L2 -949 2365 2239 525 249 66 41 chr1 168621762 168621959 -113571705 + L2 LINE L2 3111 3312 -1 839 220 142 41 chr1 168622463 168622758 -113570906 - MLT1H LTR MaLR -1 548 224 451 266 58 45 chr1 168623824 168623978 -113569686 + MIR SINE MIR 61 216 -46 2172 121 0 0 chr1 168624128 168624433 -113569231 + AluSx SINE Alu 1 305 -7 2410 77 3 0 chr1 168624433 168624796 -113568868 + AluY SINE Alu 1 364 0 508 241 71 47 chr1 168624799 168624969 -113568695 - MER5B DNA MER1_type -3 175 2 666 246 46 17 chr1 168625072 168625247 -113568417 + MER5A DNA MER1_type 3 182 -7 538 252 101 0 chr1 168625257 168625396 -113568268 + MER5A DNA MER1_type 1 153 -36 270 337 55 25 chr1 168625706 168625869 -113567795 - MIR SINE MIR -8 254 87 1768 146 0 17 chr1 168627586 168627881 -113565783 - AluJo SINE Alu -22 290 1 303 292 86 47 chr1 168628124 168628357 -113565307 - L1ME4a LINE L1 -245 5876 5635 291 316 45 8 chr1 168628827 168628960 -113564704 + MIR3 SINE MIR 3 140 -68 297 197 145 0 chr1 168629918 168629994 -113563670 + MIR SINE MIR 62 148 -60 32 0 0 0 chr1 168632148 168632180 -113561484 + GC_rich Low_complexity Low_complexity 1 32 0 215 265 0 0 chr1 168632342 168632391 -113561273 + (TAA)n Simple_repeat Simple_repeat 2 50 0 252 280 83 45 chr1 168632489 168632621 -113561043 - MIR3 SINE MIR -65 143 7 689 214 68 57 chr1 168633523 168633686 -113559978 + MIR SINE MIR 2 170 -92 1887 77 0 100 chr1 168633686 168634022 -113559642 + AluSc SINE Alu 1 305 0 689 214 68 57 chr1 168634022 168634049 -113559615 + MIR SINE MIR 170 195 -67 306 304 152 36 chr1 168634636 168634860 -113558804 + MIR SINE MIR 13 262 0 195 184 0 0 chr1 168635969 168636007 -113557657 + (ATG)n Simple_repeat Simple_repeat 2 39 0 321 313 0 36 chr1 168636039 168636151 -113557513 - MIR SINE MIR -51 211 104 686 283 36 1 chr1 168637089 168637290 -113556374 + MIR SINE MIR 46 252 -10 746 248 85 102 chr1 168637336 168637759 -113555905 + MLT1K LTR MaLR 171 586 -2 769 222 0 109 chr1 168638385 168638588 -113555076 - MER58A DNA MER1_type -2196 224 51 207 0 0 0 chr1 168638588 168638611 -113555053 + (GAA)n Simple_repeat Simple_repeat 2 24 0 769 222 0 109 chr1 168638611 168638655 -113555009 - MER58A DNA MER1_type -2369 51 4 240 346 0 0 chr1 168638691 168638772 -113554892 + MIR SINE MIR 150 230 -32 411 231 190 41 chr1 168639293 168639414 -113554250 - L2 LINE L2 0 3272 3134 888 336 92 18 chr1 168639680 168640079 -113553585 - L2 LINE L2 -559 2755 2312 1675 178 21 65 chr1 168640079 168640234 -113553430 + MLT1A1 LTR MaLR 1 161 -204 2279 86 3 0 chr1 168640234 168640538 -113553126 + AluSg SINE Alu 1 305 -5 1675 178 21 65 chr1 168640538 168640764 -113552900 + MLT1A1 LTR MaLR 161 365 0 888 336 92 18 chr1 168640764 168640855 -113552809 - L2 LINE L2 -1002 2312 2229 289 226 68 130 chr1 168641236 168641357 -113552307 + L2 LINE L2 3176 3289 -24 2072 85 7 4 chr1 168641357 168641682 -113551982 - AluSc SINE Alu 0 326 1 289 226 68 130 chr1 168641682 168641705 -113551959 + L2 LINE L2 3289 3312 -1 1049 247 101 13 chr1 168642247 168642624 -113551040 + LTR16A1 LTR ERVL 4 413 -44 184 423 0 0 chr1 168642796 168642893 -113550771 + MIR SINE MIR 58 154 -108 385 276 62 39 chr1 168642897 168643132 -113550532 + MIR SINE MIR 1 240 -22 1475 181 114 0 chr1 168643637 168643672 -113549992 + MER58B DNA MER1_type 2 32 -2388 330 26 0 0 chr1 168643672 168643711 -113549953 + (TG)n Simple_repeat Simple_repeat 1 39 0 1475 181 114 0 chr1 168643711 168643981 -113549683 + MER58B DNA MER1_type 32 341 0 1604 181 3 19 chr1 168644519 168644833 -113548831 + AluJo SINE Alu 1 309 -3 443 157 34 0 chr1 168644840 168644929 -113548735 + L1PB4 LINE L1 6058 6149 -7 217 301 92 20 chr1 168645492 168645688 -113547976 + L2 LINE L2 2827 3036 -236 524 330 11 11 chr1 168646166 168646357 -113547307 + LTR16A1 LTR ERVL 267 457 0 1747 129 15 4 chr1 168646401 168646673 -113546991 + AluJb SINE Alu 3 277 -35 340 266 83 9 chr1 168646674 168646783 -113546881 - L1MCa LINE L1 -4315 2111 1995 971 182 77 0 chr1 168646785 168646955 -113546709 - MER58A DNA MER1_type -41 183 1 220 253 21 17 chr1 168646973 168647045 -113546619 - MIR SINE MIR -79 129 57 1477 124 0 9 chr1 168647751 168647968 -113545696 - AluJb SINE Alu -13 299 85 800 232 170 26 chr1 168647970 168648393 -113545271 - L1ME4a LINE L1 -16 6105 5622 477 244 115 26 chr1 168648477 168648633 -113545031 + MIR SINE MIR 13 182 -80 871 297 142 7 chr1 168648634 168649058 -113544606 + L2 LINE L2 2809 3289 -24 1489 175 80 3 chr1 168649303 168649589 -113544075 - AluSx SINE Alu -2 310 3 1829 154 3 3 chr1 168649596 168649889 -113543775 - AluJb SINE Alu -15 297 5 2082 124 3 0 chr1 168650407 168650706 -113542958 - AluSg SINE Alu -10 300 1 358 325 103 72 chr1 168650740 168650932 -113542732 + L2 LINE L2 2914 3123 -149 239 0 32 0 chr1 168650932 168650963 -113542701 + (TTA)n Simple_repeat Simple_repeat 2 33 0 358 325 103 72 chr1 168650963 168651118 -113542546 + L2 LINE L2 3123 3272 0 306 0 0 0 chr1 168652087 168652121 -113541543 + (TTA)n Simple_repeat Simple_repeat 3 36 0 328 245 47 28 chr1 168652897 168653003 -113540661 + MER5A DNA MER1_type 20 127 -62 219 150 0 50 chr1 168653279 168653339 -113540325 + (TTTTTA)n Simple_repeat Simple_repeat 4 60 0 2101 107 3 7 chr1 168653457 168653756 -113539908 - AluSx SINE Alu -14 298 1 326 115 115 0 chr1 168654087 168654148 -113539516 + L1PA16 LINE L1 6092 6159 -7 287 216 108 54 chr1 168654149 168654297 -113539367 + L1MC5 LINE L1 7774 7929 -32 236 244 0 0 chr1 168654312 168654357 -113539307 + polypurine Low_complexity Low_complexity 2 46 0 418 215 11 0 chr1 168654818 168654911 -113538753 + L1ME3A LINE L1 5862 5955 -215 429 189 25 49 chr1 168655140 168655262 -113538402 - L1ME4a LINE L1 -17 6104 5986 676 259 86 30 chr1 168655284 168655481 -113538183 + MIR SINE MIR 9 216 -46 2137 112 5 4 chr1 168655828 168656181 -113537483 - L1ME4a LINE L1 -743 5403 5077 784 123 0 0 chr1 168656283 168656405 -113537259 - L1P LINE L1 -1689 4457 4336 * 5728 85 11 3 chr1 168656404 168657168 -113536496 + L1PA11 LINE L1 5403 6172 -2 4398 178 23 16 chr1 168657286 168657656 -113536008 - L1MB1 LINE L1 -28 6161 5795 948 132 0 0 chr1 168657656 168657808 -113535856 + (TA)n Simple_repeat Simple_repeat 1 152 0 4398 178 23 16 chr1 168657808 168658963 -113534701 - L1MB1 LINE L1 -394 5795 4623 360 234 27 36 chr1 168659399 168659510 -113534154 + LTR67 LTR ERVL 432 541 -16 554 216 50 92 chr1 168659993 168660055 -113533609 - MER113 DNA MER1_type? -312 209 146 2301 99 0 0 chr1 168660055 168660347 -113533317 - AluSg SINE Alu -10 300 9 554 216 50 92 chr1 168660347 168660361 -113533303 - MER113 DNA MER1_type? -375 146 133 2058 144 7 0 chr1 168660361 168660660 -113533004 - AluSx SINE Alu -11 301 1 554 216 50 92 chr1 168660660 168660800 -113532864 - MER113 DNA MER1_type? -388 133 1 216 303 13 26 chr1 168660890 168660966 -113532698 + MIR SINE MIR 109 183 -79 561 331 62 22 chr1 168661498 168661773 -113531891 + Charlie8 DNA MER1_type 1 286 -2131 212 275 175 0 chr1 168661947 168662027 -113531637 + L2 LINE L2 3220 3313 0 543 283 122 5 chr1 168662306 168662511 -113531153 + MIR SINE MIR 8 236 -26 1611 258 135 38 chr1 168662537 168663224 -113530440 + L2 LINE L2 1609 2362 -952 5583 154 35 48 chr1 168663224 168663459 -113530205 + L1MC3 LINE L1 6670 6907 -878 1834 144 6 81 chr1 168663459 168663793 -113529871 + AluJb SINE Alu 1 309 -3 5583 154 35 48 chr1 168663793 168664292 -113529372 + L1MC3 LINE L1 6907 7386 -399 2523 60 0 10 chr1 168664292 168664606 -113529058 + AluY SINE Alu 1 311 0 5583 154 35 48 chr1 168664606 168664989 -113528675 + L1MC3 LINE L1 7386 7773 -12 552 217 35 0 chr1 168665021 168665136 -113528528 + L2 LINE L2 2392 2510 -804 444 317 87 13 chr1 168665118 168665348 -113528316 + L2 LINE L2 2895 3141 -172 * 2121 200 19 21 chr1 168665348 168665674 -113527990 + MER90 LTR ERV1 1 327 -248 2575 198 58 8 chr1 168665674 168666155 -113527509 + MLT1D LTR MaLR 1 505 0 2121 200 19 21 chr1 168666155 168666293 -113527371 + MER90 LTR ERV1 327 464 -111 1217 138 5 0 chr1 168666293 168666482 -113527182 + L1MC3 LINE L1 7408 7597 -188 443 221 19 19 chr1 168666484 168666588 -113527076 + MER90 LTR ERV1 511 614 0 22 0 0 0 chr1 168666664 168666686 -113526978 + AT_rich Low_complexity Low_complexity 1 22 0 458 281 125 10 chr1 168667027 168667219 -113526445 - MIR SINE MIR -1 261 48 224 137 20 78 chr1 168667472 168667523 -113526141 - L2 LINE L2 -4 3309 3262 31 26 0 0 chr1 168668016 168668054 -113525610 + AT_rich Low_complexity Low_complexity 1 38 0 182 333 175 0 chr1 168668512 168668632 -113525032 + MIR3 SINE MIR 3 143 -65 462 285 85 11 chr1 168668649 168668871 -113524793 + MIR3 SINE MIR 8 237 -25 897 273 94 57 chr1 168669265 168669720 -113523944 + MLT1J LTR MaLR 3 474 -37 270 154 58 0 chr1 168670084 168670136 -113523528 + L1 LINE L1 3615 3669 -2477 2331 161 46 66 chr1 168670143 168670690 -113522974 + L1 LINE L1 3818 4353 -1793 489 308 32 45 chr1 168670791 168671038 -113522626 + L2 LINE L2 2650 2893 -421 441 288 42 79 chr1 168671176 168671416 -113522248 + L2 LINE L2 3082 3312 -1 592 324 5 38 chr1 168673312 168673525 -113520139 + MIR SINE MIR 32 237 -25 2415 73 0 10 chr1 168673760 168674074 -113519590 - AluY SINE Alu 0 311 1 389 208 121 47 chr1 168674076 168674225 -113519439 - MER112 DNA MER1_type -4 256 97 423 0 0 0 chr1 168674261 168674308 -113519356 + (TG)n Simple_repeat Simple_repeat 1 47 0 1438 72 5 5 chr1 168674408 168674602 -113519062 - L1P LINE L1 -3354 2792 2599 * 7531 52 1 1 chr1 168674592 168675526 -113518138 + L1P LINE L1 1677 2610 -3536 195 129 0 0 chr1 168676342 168676373 -113517291 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 619 275 122 22 chr1 168676529 168676751 -113516913 - MIR SINE MIR -10 252 9 1315 223 101 97 chr1 168676894 168677441 -113516223 - MLT1H LTR MaLR 0 549 1 196 343 20 20 chr1 168677520 168677622 -113516042 - MIR SINE MIR -79 183 82 232 135 0 0 chr1 168678019 168678056 -113515608 + MIR SINE MIR 107 143 -65 528 241 77 82 chr1 168679362 168679582 -113514082 - MIR SINE MIR -9 253 35 19771 44 0 12 chr1 168679703 168682791 -113510873 + L1PA5 LINE L1 3075 6154 0 450 0 0 0 chr1 168683358 168683408 -113510256 + (TA)n Simple_repeat Simple_repeat 2 51 0 255 217 0 29 chr1 168683754 168683823 -113509841 - MLT1K LTR MaLR -339 249 183 1584 194 65 122 chr1 168683906 168684500 -113509164 + MLT1F1 LTR MaLR 2 567 0 528 265 94 12 chr1 168684519 168684689 -113508975 + MIR SINE MIR 29 212 -50 489 34 0 0 chr1 168685884 168685943 -113507721 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 245 277 0 0 chr1 168686941 168687006 -113506658 + HAL1b LINE L1 430 494 -854 1940 161 0 3 chr1 168687038 168687337 -113506327 - AluJo SINE Alu -14 298 1 2428 231 52 20 chr1 168687537 168688204 -113505460 - L2 LINE L2 -911 2403 1712 2370 75 10 0 chr1 168688204 168688499 -113505165 - AluY SINE Alu -13 298 1 2428 231 52 20 chr1 168688499 168688525 -113505139 - L2 LINE L2 -1602 1712 1688 273 326 35 41 chr1 168688570 168688666 -113504998 - L2 LINE L2 -1017 2297 2201 1873 150 17 10 chr1 168688666 168688966 -113504698 + AluJb SINE Alu 1 302 -10 273 326 35 41 chr1 168688966 168689041 -113504623 - L2 LINE L2 -1113 2201 2127 216 341 80 0 chr1 168689158 168689246 -113504418 - L2 LINE L2 -1223 2091 1997 226 183 67 0 chr1 168689487 168689547 -113504117 - L2 LINE L2 -1230 2084 2021 271 272 87 33 chr1 168689605 168689697 -113503967 - MIR SINE MIR -8 254 158 507 279 21 0 chr1 168689773 168689913 -113503751 - MER117 DNA MER1_type -44 153 11 216 0 0 0 chr1 168689929 168689953 -113503711 + (T)n Simple_repeat Simple_repeat 1 24 0 2731 52 3 100 chr1 168690150 168690728 -113502936 - L1PA5 LINE L1 0 6154 5633 22 35 0 0 chr1 168690815 168690844 -113502820 + AT_rich Low_complexity Low_complexity 1 29 0 2003 165 21 12 chr1 168691190 168691530 -113502134 + MER2 DNA MER2_type 2 344 0 21 36 0 0 chr1 168691691 168691719 -113501945 + AT_rich Low_complexity Low_complexity 1 28 0 223 305 61 0 chr1 168692143 168692225 -113501439 - MIR SINE MIR -6 256 170 946 175 181 55 chr1 168692731 168693020 -113500644 + MLT1A1 LTR MaLR 24 349 -16 2705 103 0 14 chr1 168693020 168693071 -113500593 + THE1B LTR MaLR 1 51 -313 2876 94 51 65 chr1 168693071 168693562 -113500102 + LTR19A LTR ERV1 1 484 -2 2705 103 0 14 chr1 168693562 168693879 -113499785 + THE1B LTR MaLR 51 364 0 1769 160 18 3 chr1 168694217 168694499 -113499165 - AluJb SINE Alu -26 286 1 2347 88 7 3 chr1 168694505 168694813 -113498851 - AluY SINE Alu 0 311 3 842 129 0 8 chr1 168695004 168695128 -113498536 - L1PA7 LINE L1 0 6154 6032 1840 174 43 63 chr1 168695214 168695430 -113498234 - MLT1B LTR MaLR 0 390 184 219 36 0 0 chr1 168695430 168695458 -113498206 + (GA)n Simple_repeat Simple_repeat 1 28 0 1840 174 43 63 chr1 168695458 168695637 -113498027 - MLT1B LTR MaLR -206 184 3 855 203 0 0 chr1 168697445 168697593 -113496071 + FRAM SINE Alu 1 148 -18 323 96 19 0 chr1 168697593 168697645 -113496019 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 471 78 69 10 chr1 168697749 168697851 -113495813 + GA-rich Low_complexity Low_complexity 3 110 0 2518 58 0 0 chr1 168698124 168698418 -113495246 + L1PA5 LINE L1 5860 6153 -1 624 256 43 24 chr1 168698495 168698702 -113494962 + L1ME2 LINE L1 5824 6034 -130 332 188 14 0 chr1 168698712 168698781 -113494883 + L1ME2 LINE L1 6085 6154 -10 189 107 0 0 chr1 168698796 168698824 -113494840 + (A)n Simple_repeat Simple_repeat 1 28 0 792 193 57 0 chr1 168698878 168699070 -113494594 - L1ME LINE L1 -645 5519 5317 2172 104 0 49 chr1 168699071 168699398 -113494266 - AluSx SINE Alu -1 311 1 240 35 0 0 chr1 168699430 168699459 -113494205 + (CA)n Simple_repeat Simple_repeat 2 30 0 774 282 71 19 chr1 168699459 168699838 -113493826 - L1ME LINE L1 -922 5224 4826 486 242 38 57 chr1 168699916 168700127 -113493537 - L1ME LINE L1 -305 5816 5610 2218 86 0 3 chr1 168700132 168700423 -113493241 - AluSg SINE Alu -20 290 1 663 168 35 0 chr1 168700457 168700570 -113493094 + AluJ SINE Alu 1 117 -185 635 153 18 9 chr1 168700572 168700683 -113492981 + AluJ SINE Alu 189 300 -12 339 269 91 58 chr1 168700688 168700963 -113492701 - L1ME LINE L1 -2233 5575 5292 379 99 14 14 chr1 168701194 168701265 -113492399 + (CCCCCT)n Simple_repeat Simple_repeat 6 76 0 1303 263 86 29 chr1 168702333 168702786 -113490878 - L2 LINE L2 0 3313 2835 1610 185 0 14 chr1 168703147 168703439 -113490225 + AluJo SINE Alu 4 291 -21 273 234 75 43 chr1 168704671 168704765 -113488899 - MIR SINE MIR -67 141 45 1639 125 147 11 chr1 168909387 168909659 -113284005 - AluJb SINE Alu -3 309 1 2300 92 7 3 chr1 168910003 168910297 -113283367 - AluSc SINE Alu -14 295 1 2079 131 10 3 chr1 168910304 168910595 -113283069 - AluSx SINE Alu -19 293 1 204 40 0 0 chr1 168916073 168916098 -113277566 + (CCCCCG)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr1 168916593 168916614 -113277050 + AT_rich Low_complexity Low_complexity 1 21 0 270 140 0 40 chr1 168918805 168918855 -113274809 + AluS SINE Alu 13 60 -243 1938 108 104 0 chr1 168921890 168922169 -113271495 - AluSx SINE Alu -4 308 1 779 142 8 15 chr1 168922170 168922304 -113271360 - AluJo/FLAM SINE Alu -169 133 1 2416 73 3 10 chr1 168922679 168922980 -113270684 - AluY SINE Alu -12 299 1 2282 113 3 0 chr1 168923045 168923345 -113270319 - AluSx SINE Alu -11 301 1 1682 123 0 0 chr1 168923676 168923903 -113269761 - AluSg/x SINE Alu -14 298 72 182 341 56 0 chr1 168924489 168924553 -113269111 + MER5B DNA MER1_type 46 105 -73 1953 141 7 16 chr1 168924553 168924857 -113268807 - AluJo SINE Alu -11 301 1 182 341 56 0 chr1 168924857 168924918 -113268746 + MER5B DNA MER1_type 105 178 0 2443 85 26 0 chr1 168925052 168925357 -113268307 + AluSp SINE Alu 1 313 0 2116 118 7 23 chr1 168925374 168925678 -113267986 + AluSx SINE Alu 1 299 -13 1012 120 7 0 chr1 168925690 168925832 -113267832 + FLAM_C SINE Alu 1 143 0 2206 107 6 25 chr1 168925910 168926092 -113267572 - AluSq SINE Alu 0 313 138 2237 97 0 41 chr1 168926092 168926412 -113267252 - AluSp SINE Alu -6 307 1 2206 107 6 25 chr1 168926412 168926548 -113267116 - AluSq SINE Alu -175 138 1 1910 130 56 0 chr1 168927068 168927353 -113266311 - AluSx SINE Alu -11 301 1 2485 43 11 0 chr1 168929617 168929899 -113263765 - AluY SINE Alu -18 293 9 349 76 0 4 chr1 168929899 168929961 -113263703 - Alu SINE Alu -257 45 1 898 244 255 0 chr1 168929979 168930336 -113263328 - HAL1 LINE L1 -538 1969 1522 1477 160 0 105 chr1 168930395 168930708 -113262956 - AluJb SINE Alu -28 284 5 1654 154 12 72 chr1 168930752 168931071 -113262593 + AluJb SINE Alu 1 300 -12 613 285 134 34 chr1 168931071 168931108 -113262556 - HAL1 LINE L1 -1479 1028 996 2353 119 0 0 chr1 168931108 168931418 -113262246 - AluSg SINE Alu 0 310 1 613 285 134 34 chr1 168931418 168931731 -113261933 - HAL1 LINE L1 -1511 996 643 2548 58 0 0 chr1 168932026 168932320 -113261344 - AluY SINE Alu -17 294 1 918 169 13 0 chr1 168932321 168932475 -113261189 - AluJ SINE Alu -18 294 139 454 111 0 0 chr1 168932709 168932781 -113260883 + FLAM SINE Alu 54 125 -18 785 181 0 0 chr1 168932797 168932930 -113260734 - AluJ SINE Alu -169 133 1 1064 169 34 42 chr1 168933081 168933318 -113260346 + MER46A DNA MER2_type 2 236 0 1615 163 4 0 chr1 168933365 168933605 -113260059 - AluSx SINE Alu -71 241 1 889 154 0 0 chr1 168933615 168933745 -113259919 - FRAM SINE Alu -23 153 24 2178 129 0 13 chr1 168933776 168934085 -113259579 + AluJb SINE Alu 1 305 -7 544 178 0 0 chr1 168934092 168934182 -113259482 + Tigger4(Zombi) DNA MER2_type 254 343 -2388 2897 174 18 42 chr1 168934182 168934209 -113259455 + L1P LINE L1 4390 4416 -1730 2206 101 0 14 chr1 168934209 168934524 -113259140 + AluSq SINE Alu 1 311 0 2897 174 18 42 chr1 168934524 168934673 -113258991 + L1P LINE L1 4416 4567 -1579 1903 124 3 60 chr1 168934673 168934972 -113258692 + AluSx SINE Alu 2 283 -29 198 0 0 0 chr1 168934974 168934996 -113258668 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2897 174 18 42 chr1 168934996 168935486 -113258178 + L1P LINE L1 4568 5045 -1101 2138 67 33 57 chr1 168935488 168935788 -113257876 + AluSp SINE Alu 1 293 -20 2404 82 7 3 chr1 168935799 168936103 -113257561 + AluSq SINE Alu 1 305 -8 23 0 0 0 chr1 168936335 168936358 -113257306 + AT_rich Low_complexity Low_complexity 1 23 0 2103 137 0 0 chr1 168936822 168937106 -113256558 + AluSx SINE Alu 1 284 -28 2188 92 4 4 chr1 168937106 168937387 -113256277 + AluSx SINE Alu 30 310 -2 1804 172 3 7 chr1 168938975 168939271 -113254393 - AluJb SINE Alu -17 295 1 2143 101 22 32 chr1 168939520 168939836 -113253828 + AluSq SINE Alu 1 313 0 1773 178 14 0 chr1 168940159 168940452 -113253212 - AluJb SINE Alu -15 297 1 2497 70 3 0 chr1 168940511 168940809 -113252855 - AluSg SINE Alu -11 299 1 184 344 73 10 chr1 168941056 168941152 -113252512 - L2 LINE L2 -8 3264 3163 1298 151 9 73 chr1 168941376 168941513 -113252151 + AluJo SINE Alu 1 118 -194 2341 97 3 3 chr1 168941513 168941813 -113251851 + AluSg SINE Alu 1 300 -10 1298 151 9 73 chr1 168941813 168941907 -113251757 + AluJo SINE Alu 118 217 -95 2462 90 0 0 chr1 168941994 168942294 -113251370 - AluY SINE Alu -11 300 1 1829 138 58 21 chr1 168943881 168944172 -113249492 - AluSx SINE Alu -10 302 1 1934 137 14 0 chr1 168944281 168944559 -113249105 + AluSx SINE Alu 9 290 -22 757 210 129 5 chr1 168944737 168944923 -113248741 - MER3 DNA MER1_type 0 209 1 2683 36 0 0 chr1 168945005 168945306 -113248358 - AluY SINE Alu -10 301 1 1037 100 0 0 chr1 168945306 168945436 -113248228 - AluSq/x SINE Alu -179 134 5 517 241 47 29 chr1 168945544 168945714 -113247950 + MIR SINE MIR 56 228 -34 1810 168 0 20 chr1 168945902 168946200 -113247464 + AluJb SINE Alu 11 302 -10 190 254 68 0 chr1 168946236 168946295 -113247369 - MIR SINE MIR -49 213 151 * 315 243 40 14 chr1 168946285 168946359 -113247305 - L2 LINE L2 -44 3269 3194 1724 134 60 28 chr1 168946368 168946714 -113246950 + L1MC2 LINE L1 5769 6132 -52 1072 169 0 7 chr1 168946716 168946941 -113246723 + AluJo SINE Alu 5 282 -30 498 56 0 0 chr1 168946941 168947012 -113246652 + L1MC2 LINE L1 6154 6224 -120 1161 199 0 18 chr1 168947017 168947238 -113246426 + AluJb SINE Alu 82 298 -14 495 115 154 0 chr1 168947238 168947342 -113246322 + L1MC2 LINE L1 6225 6344 0 581 281 81 24 chr1 168947353 168947375 -113246289 - L2 LINE L2 -185 3128 3109 2335 107 0 7 chr1 168947375 168947683 -113245981 + AluSc SINE Alu 1 306 -3 581 281 81 24 chr1 168947683 168948004 -113245660 - L2 LINE L2 -204 3109 2698 1568 238 191 63 chr1 168948004 168948877 -113244787 - L2 LINE L2 -813 2501 1517 2305 125 0 0 chr1 168949450 168949753 -113243911 - AluSq SINE Alu -10 303 1 2334 94 3 7 chr1 168949768 168950067 -113243597 - AluSx SINE Alu -14 298 1 2401 99 0 0 chr1 168950112 168950415 -113243249 + AluSg1 SINE Alu 1 303 -6 1868 169 0 7 chr1 168950418 168950725 -113242939 + AluSx SINE Alu 1 305 -7 1909 133 0 0 chr1 168950727 168950990 -113242674 + AluSq SINE Alu 1 263 -50 2164 113 3 0 chr1 168951150 168951433 -113242231 - AluSx SINE Alu -28 284 1 2117 124 7 3 chr1 168951442 168951740 -113241924 - AluSx SINE Alu -13 299 1 1173 139 23 0 chr1 168951828 168952000 -113241664 - AluJo SINE Alu -93 219 44 741 189 67 0 chr1 168952011 168952175 -113241489 - AluSg/x SINE Alu -12 300 126 2132 110 13 17 chr1 168952199 168952498 -113241166 - AluSq SINE Alu -15 298 1 2250 112 6 26 chr1 168954059 168954372 -113239292 + AluSx SINE Alu 1 307 -5 23 0 0 0 chr1 168954567 168954590 -113239074 + AT_rich Low_complexity Low_complexity 1 23 0 2440 87 3 3 chr1 168954984 168955294 -113238370 + AluSp SINE Alu 1 310 -3 2221 114 0 3 chr1 168955316 168955613 -113238051 - 7SLRNA srpRNA srpRNA -13 307 12 2050 125 24 17 chr1 168955875 168956042 -113237622 - AluSg SINE Alu -12 298 127 2674 51 0 10 chr1 168956042 168956356 -113237308 - AluY SINE Alu 0 311 1 2050 125 24 17 chr1 168956356 168956484 -113237180 - AluSg SINE Alu -183 127 1 192 214 83 95 chr1 168957142 168957226 -113236438 - MER5A DNA MER1_type -46 143 61 2470 73 0 22 chr1 168957227 168957543 -113236121 - AluY SINE Alu -2 309 1 209 241 12 108 chr1 168957544 168957627 -113236037 - MER5A DNA MER1_type -114 75 1 2640 58 0 3 chr1 168957649 168957959 -113235705 - AluY SINE Alu -2 309 1 477 269 150 18 chr1 168958465 168958632 -113235032 + MER5A DNA MER1_type 1 189 0 2427 80 0 3 chr1 168959004 168959305 -113234359 - AluSq SINE Alu -13 300 1 2052 127 0 38 chr1 168959314 168959490 -113234174 - AluSx SINE Alu -10 302 142 2391 90 3 0 chr1 168959490 168959789 -113233875 - AluSx SINE Alu -11 301 2 2052 127 0 38 chr1 168959789 168959926 -113233738 - AluSx SINE Alu -170 142 1 1108 177 74 15 chr1 168960110 168960313 -113233351 - AluJo SINE Alu -97 215 1 225 305 46 86 chr1 168960327 168960524 -113233140 + L2 LINE L2 2888 3076 -196 306 279 161 54 chr1 168960870 168961019 -113232645 + L1MEd LINE L1 2 134 -5985 2489 76 0 10 chr1 168961019 168961333 -113232331 + AluY SINE Alu 1 311 0 306 279 161 54 chr1 168961333 168961499 -113232165 + L1MEd LINE L1 134 351 -5768 467 224 124 81 chr1 168961521 168961626 -113232038 + L1MEd LINE L1 606 705 -5414 2054 142 0 7 chr1 168961626 168961929 -113231735 + AluSx SINE Alu 1 301 -11 467 224 124 81 chr1 168961929 168962033 -113231631 + L1MEd LINE L1 705 824 -5295 * 1122 272 82 33 chr1 168962024 168962130 -113231534 + L1MEd LINE L1 2721 2820 -3309 2287 80 10 3 chr1 168962130 168962419 -113231245 + AluY SINE Alu 1 291 -20 1122 272 82 33 chr1 168962419 168962889 -113230775 + L1MEd LINE L1 2820 3265 -2864 2325 110 0 0 chr1 168962889 168963197 -113230467 + AluSx SINE Alu 1 308 -4 2429 71 0 16 chr1 168963198 168963507 -113230157 + AluY SINE Alu 1 304 -7 1122 272 82 33 chr1 168963507 168963781 -113229883 + L1MEd LINE L1 3264 3616 -2513 752 237 37 40 chr1 168963819 168964077 -113229587 + L1ME3A LINE L1 5658 5911 -259 1971 141 10 3 chr1 168964077 168964374 -113229290 + AluJb SINE Alu 1 299 -13 752 237 37 40 chr1 168964374 168964415 -113229249 + L1ME3A LINE L1 5911 5951 -219 1554 192 11 0 chr1 168964847 168965133 -113228531 + AluJb SINE Alu 11 299 -13 907 261 113 34 chr1 168966108 168966549 -113227115 + MLT1K LTR MaLR 1 476 0 222 191 0 0 chr1 168969351 168969393 -113224271 + (CCCA)n Simple_repeat Simple_repeat 1 42 0 189 227 23 23 chr1 168969943 168969987 -113223677 - MIR3 SINE MIR -8 200 157 2581 68 0 10 chr1 168969992 168970302 -113223362 + AluY SINE Alu 1 307 -4 2355 93 0 0 chr1 168973120 168973411 -113220253 - AluSx SINE Alu -2 310 20 21 0 0 0 chr1 168973827 168973848 -113219816 + AT_rich Low_complexity Low_complexity 1 21 0 2152 75 61 0 chr1 168974078 168974357 -113219307 + AluSp SINE Alu 7 302 -11 871 300 42 0 chr1 168974357 168974594 -113219070 - MIR SINE MIR -14 248 2 1503 187 51 15 chr1 168974641 168974764 -113218900 + AluJo SINE Alu 1 118 -195 449 17 17 0 chr1 168974764 168974822 -113218842 + (CA)n Simple_repeat Simple_repeat 2 60 0 1503 187 51 15 chr1 168974822 168975001 -113218663 + AluJo SINE Alu 118 313 0 2028 70 13 93 chr1 168975010 168975334 -113218330 + AluSp SINE Alu 6 305 0 289 258 65 0 chr1 168975612 168975674 -113217990 - L2 LINE L2 -38 3234 3169 2367 81 0 3 chr1 168975756 168976052 -113217612 - AluY SINE Alu -16 295 1 588 216 22 37 chr1 168976054 168976188 -113217476 - MIR SINE MIR -98 164 33 2159 134 0 13 chr1 168976189 168976494 -113217170 - AluSx SINE Alu -11 301 1 491 231 61 77 chr1 168976537 168976637 -113217027 - LTR25 LTR ERV1 -35 693 593 240 100 0 0 chr1 168976637 168976677 -113216987 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1487 117 0 59 chr1 168976686 168976839 -113216825 - AluSg/x SINE Alu -35 277 139 2135 123 0 30 chr1 168976839 168977141 -113216523 - AluSc SINE Alu -16 293 1 1487 117 0 59 chr1 168977141 168977209 -113216455 - AluSg/x SINE Alu -173 139 69 491 231 61 77 chr1 168977209 168977530 -113216134 - LTR25 LTR ERV1 -143 585 336 236 95 191 48 chr1 168977502 168977565 -113216099 - MER51A LTR ERV1 -355 279 208 * 525 129 53 0 chr1 168977708 168977819 -113215845 - MER61E LTR ERV1 -484 85 1 1346 133 5 15 chr1 168977879 168978082 -113215582 - AluSg/x SINE Alu -13 299 99 427 153 34 17 chr1 168978182 168978300 -113215364 + CT-rich Low_complexity Low_complexity 2 121 0 1266 144 0 21 chr1 168978308 168978502 -113215162 - AluSg/x SINE Alu -1 309 120 2318 98 0 0 chr1 168979306 168979602 -113214062 + AluSg SINE Alu 1 296 -14 188 273 0 18 chr1 168982263 168982318 -113211346 + L2 LINE L2 3250 3303 -10 203 228 0 53 chr1 168982769 168982826 -113210838 + GA-rich Low_complexity Low_complexity 1 54 0 207 288 30 0 chr1 168985078 168985144 -113208520 + L2 LINE L2 3246 3313 0 1705 197 0 14 chr1 168985243 168985537 -113208127 + AluJo SINE Alu 1 290 -22 330 45 0 0 chr1 168985565 168985609 -113208055 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 697 254 206 0 chr1 168986360 168986569 -113207095 + MIR SINE MIR 3 254 -8 2317 82 0 0 chr1 168987484 168987788 -113205876 - AluSg SINE Alu 0 304 1 538 246 52 0 chr1 168987831 168987965 -113205699 + MIR3 SINE MIR 63 203 -5 2244 93 0 10 chr1 168989320 168989633 -113204031 - AluY SINE Alu 0 311 1 1143 161 0 6 chr1 168989645 168989812 -113203852 - AluJb SINE Alu -9 303 136 1867 158 13 19 chr1 168989812 168990122 -113203542 - AluJo SINE Alu -2 310 3 1815 176 3 13 chr1 168990319 168990621 -113203043 - AluJo SINE Alu -13 299 1 2526 68 0 0 chr1 168990645 168990939 -113202725 + AluSc SINE Alu 1 294 -15 2416 53 7 0 chr1 168990939 168991251 -113202413 + AluSp SINE Alu 1 314 0 379 290 140 27 chr1 168991476 168991697 -113201967 + MIR SINE MIR 11 256 -6 617 175 117 8 chr1 168991699 168991819 -113201845 + FLAM_C SINE Alu 1 133 0 2506 71 0 0 chr1 168992545 168992841 -113200823 - AluY SINE Alu -15 296 1 185 305 95 57 chr1 168992866 168992971 -113200693 - L3b LINE CR1 -42 1541 1433 1226 107 0 28 chr1 168993881 168994058 -113199606 - AluSg/x SINE Alu -5 305 134 2547 70 0 0 chr1 168994100 168994401 -113199263 + AluY SINE Alu 1 301 -10 547 176 55 161 chr1 168995235 168995434 -113198230 - FAM SINE Alu 0 49 1 23 0 0 0 chr1 168995592 168995615 -113198049 + AT_rich Low_complexity Low_complexity 1 23 0 1809 100 0 8 chr1 168995731 168995972 -113197692 + AluSq SINE Alu 1 239 -74 2041 81 29 7 chr1 168995972 168996244 -113197420 + AluSq SINE Alu 23 301 -12 1168 139 23 0 chr1 168996255 168996427 -113197237 + AluJo SINE Alu 44 219 -93 2107 124 7 3 chr1 168996515 168996813 -113196851 + AluSx SINE Alu 1 299 -13 2358 100 3 0 chr1 168996822 168997121 -113196543 + AluSx SINE Alu 1 300 -12 2316 84 0 3 chr1 168997344 168997628 -113196036 - AluSx SINE Alu -29 283 1 390 204 19 56 chr1 168998051 168998159 -113195505 + MIR3 SINE MIR 81 184 -24 22 0 0 0 chr1 168998800 168998822 -113194842 + AT_rich Low_complexity Low_complexity 1 22 0 370 285 45 85 chr1 168999428 168999628 -113194036 + MIR SINE MIR 71 262 0 2615 47 0 3 chr1 168999962 169000262 -113193402 - AluY SINE Alu -12 299 1 185 305 95 57 chr1 169000287 169000392 -113193272 - L3b LINE CR1 -42 1541 1433 1210 113 0 28 chr1 169001302 169001479 -113192185 - AluSg/x SINE Alu -5 307 136 2492 76 0 0 chr1 169001521 169001822 -113191842 + AluY SINE Alu 1 301 -10 547 176 55 161 chr1 169002656 169002855 -113190809 - FAM SINE Alu 0 49 1 23 0 0 0 chr1 169003013 169003036 -113190628 + AT_rich Low_complexity Low_complexity 1 23 0 1809 100 0 8 chr1 169003152 169003393 -113190271 + AluSq SINE Alu 1 239 -74 2197 83 3 7 chr1 169003393 169003682 -113189982 + AluSx SINE Alu 23 311 -1 336 311 61 20 chr1 169003689 169003885 -113189779 + HAL1 LINE L1 2299 2502 -5 2265 92 3 33 chr1 169003886 169004189 -113189475 - AluSx SINE Alu -18 294 1 2380 96 0 3 chr1 169004917 169005220 -113188444 - AluSx SINE Alu -9 303 2 2140 128 0 3 chr1 169007145 169007435 -113186229 + AluSx SINE Alu 1 289 -23 189 0 0 0 chr1 169007442 169007463 -113186201 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1193 267 104 28 chr1 169007482 169007593 -113186071 + L1ME3A LINE L1 5188 5289 -881 2214 133 0 19 chr1 169007593 169007910 -113185754 + AluSx SINE Alu 1 311 -1 1193 267 104 28 chr1 169007910 169008058 -113185606 + L1ME3A LINE L1 5289 5424 -746 2018 128 7 7 chr1 169008058 169008346 -113185318 - AluJb SINE Alu -16 296 9 1193 267 104 28 chr1 169008346 169008807 -113184857 + L1ME3A LINE L1 5424 5962 -208 23 0 0 0 chr1 169009116 169009139 -113184525 + AT_rich Low_complexity Low_complexity 1 23 0 935 185 0 0 chr1 169009139 169009285 -113184379 - FRAM SINE Alu -18 158 13 419 264 28 113 chr1 169009287 169009440 -113184224 - L1M4 LINE L1 -1338 4808 4676 2052 224 99 43 chr1 169009440 169009534 -113184130 + MLT1G1 LTR MaLR 1 88 -507 2166 116 0 3 chr1 169009534 169009870 -113183794 + AluSx SINE Alu 1 335 0 2052 224 99 43 chr1 169009870 169010337 -113183327 + MLT1G1 LTR MaLR 88 595 0 419 264 28 113 chr1 169010337 169010395 -113183269 - L1M4 LINE L1 -1470 4676 4615 2167 124 0 0 chr1 169010483 169010787 -113182877 - AluSx SINE Alu 0 304 1 22 70 0 0 chr1 169011632 169011675 -113181989 + AT_rich Low_complexity Low_complexity 1 43 0 763 220 70 120 chr1 169011754 169011864 -113181800 - L1MC5 LINE L1 -41 7920 7806 2174 125 0 3 chr1 169011864 169012161 -113181503 - AluSg SINE Alu -14 296 1 2213 104 10 0 chr1 169012170 169012459 -113181205 - AluSq SINE Alu -21 292 1 2198 109 10 0 chr1 169012465 169012759 -113180905 - AluSx SINE Alu -15 297 1 763 220 70 120 chr1 169012759 169013191 -113180473 - L1MC5 LINE L1 -168 7793 7389 700 162 0 0 chr1 169013194 169013299 -113180365 - AluJb SINE Alu -15 297 193 230 217 0 84 chr1 169013299 169013382 -113180282 + L1MC5 LINE L1 7845 7920 -41 763 127 0 17 chr1 169013446 169013564 -113180100 - AluJb SINE Alu -121 191 76 2251 112 0 16 chr1 169013697 169014000 -113179664 - AluSq SINE Alu -14 299 2 1770 155 4 4 chr1 169014009 169014274 -113179390 - AluSx SINE Alu -43 269 5 402 180 0 0 chr1 169014278 169014372 -113179292 - L1M4 LINE L1 -814 5332 5239 2403 89 0 13 chr1 169014400 169014714 -113178950 - AluSx SINE Alu -2 310 1 2055 132 0 0 chr1 169015437 169015717 -113177947 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr1 169015718 169015740 -113177924 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 720 171 8 8 chr1 169015827 169015956 -113177708 + AluJb SINE Alu 183 311 -1 756 218 0 0 chr1 169015964 169016278 -113177386 + FLAM_C SINE Alu 1 314 0 798 156 6 22 chr1 169016098 169016310 -113177354 + GA-rich Low_complexity Low_complexity 1 209 0 554 73 12 0 chr1 169016494 169016576 -113177088 + MSTA LTR MaLR 1 83 -345 5894 153 22 4 chr1 169016581 169017564 -113176100 + MSTA-int LTR MaLR 651 1651 0 2994 103 12 14 chr1 169017564 169017991 -113175673 + MSTA LTR MaLR 1 426 -2 516 206 93 0 chr1 169020101 169020208 -113173456 + L2 LINE L2 3156 3272 0 2199 116 0 7 chr1 169021183 169021485 -113172179 + AluSx SINE Alu 12 311 -1 678 227 84 7 chr1 169021743 169021897 -113171767 - FAM SINE Alu -9 166 1 725 164 0 0 chr1 169021959 169022075 -113171589 - AluSq/x SINE Alu -195 117 2 204 260 293 0 chr1 169023321 169023444 -113170220 - MER91A DNA MER1_type -10 186 28 430 261 152 30 chr1 169024156 169024321 -113169343 + MIR SINE MIR 4 188 -74 207 324 22 29 chr1 169024496 169024628 -113169036 + MIR SINE MIR 24 153 -55 190 261 14 72 chr1 169024835 169024904 -113168760 + L3 LINE CR1 575 639 -938 210 203 0 68 chr1 169025020 169025079 -113168585 + MIR SINE MIR 16 70 -138 1963 113 0 85 chr1 169025212 169025540 -113168124 + AluSq SINE Alu 1 300 -13 371 300 3 10 chr1 169026936 169026980 -113166684 + (TG)n Simple_repeat Simple_repeat 1 44 -685 2125 97 18 0 chr1 169026980 169027282 -113166382 - AluSq SINE Alu 0 307 1 371 300 3 10 chr1 169027282 169027671 -113165993 + (TG)n Simple_repeat Simple_repeat 44 729 0 1598 85 0 0 chr1 169028589 169028788 -113164876 - AluSq SINE Alu -114 199 1 627 131 37 37 chr1 169028790 169028897 -113164767 - AluJo SINE Alu -170 142 36 355 274 140 43 chr1 169029116 169029302 -113164362 - L2 LINE L2 -26 3287 3084 2335 98 7 3 chr1 169029681 169029988 -113163676 - AluSg SINE Alu -2 308 1 2323 92 0 0 chr1 169030136 169030428 -113163236 - AluY SINE Alu -19 292 1 2056 129 7 0 chr1 169030850 169031137 -113162527 + AluJb SINE Alu 11 299 -13 1223 137 126 0 chr1 169031257 169031447 -113162217 + AluJo SINE Alu 5 218 -94 215 200 0 0 chr1 169031483 169031518 -113162146 + polypurine Low_complexity Low_complexity 3 37 0 662 289 166 15 chr1 169032420 169032877 -113160787 + L1ME LINE L1 5283 5808 -313 2033 114 55 10 chr1 169032965 169033255 -113160409 - AluSg SINE Alu -7 303 1 25 0 0 0 chr1 169033304 169033329 -113160335 + AT_rich Low_complexity Low_complexity 1 25 0 1477 166 28 48 chr1 169033359 169033648 -113160016 + AluJo SINE Alu 13 295 -17 2308 68 3 64 chr1 169033651 169033977 -113159687 + AluY SINE Alu 1 306 -5 23 0 0 0 chr1 169034087 169034110 -113159554 + AT_rich Low_complexity Low_complexity 1 23 0 427 328 25 13 chr1 169034131 169034369 -113159295 + L1MD1 LINE L1 5421 5661 -460 2288 107 0 3 chr1 169034405 169034704 -113158960 + AluSx SINE Alu 9 306 -6 2215 127 43 3 chr1 169034714 169035061 -113158603 + MER46B DNA MER2_type 1 236 0 876 286 13 25 chr1 169035159 169035397 -113158267 - MIR SINE MIR -19 243 9 444 291 135 22 chr1 169035744 169036112 -113157552 + ERVL LTR ERVL 3060 3464 -2190 898 253 54 17 chr1 169036336 169036577 -113157087 + MIR SINE MIR 13 262 0 566 117 11 0 chr1 169036595 169036689 -113156975 + L1MB2 LINE L1 6048 6142 -29 2288 92 20 3 chr1 169036689 169036993 -113156671 - AluSq SINE Alu -4 309 1 1600 181 16 16 chr1 169037045 169037349 -113156315 + AluJo SINE Alu 1 304 -8 23 0 0 0 chr1 169037392 169037415 -113156249 + AT_rich Low_complexity Low_complexity 1 23 0 605 322 75 24 chr1 169037455 169038108 -113155556 + ERVL LTR ERVL 3827 4561 -1203 756 229 62 6 chr1 169038130 169038309 -113155355 - MIR SINE MIR -58 204 16 1192 291 116 32 chr1 169038309 169038971 -113154693 + ERVL LTR ERVL 4572 5289 -475 962 220 93 8 chr1 169038974 169039210 -113154454 + MIR SINE MIR 7 262 0 1257 185 26 15 chr1 169039281 169039551 -113154113 + L1MD1 LINE L1 5657 5929 -313 1270 121 11 26 chr1 169039551 169039741 -113153923 - AluJb SINE Alu -16 296 110 1762 127 4 0 chr1 169039742 169039987 -113153677 + AluSx SINE Alu 1 246 -66 1187 165 72 8 chr1 169041072 169041321 -113152343 - MER58B DNA MER1_type 0 341 77 1562 149 57 43 chr1 169041331 169041612 -113152052 + AluJb SINE Alu 12 296 -16 4084 156 31 52 chr1 169041614 169042044 -113151620 + L1MB3 LINE L1 4903 5341 -842 2233 122 0 3 chr1 169042044 169042340 -113151324 + AluSg SINE Alu 2 296 -14 4084 156 31 52 chr1 169042340 169043068 -113150596 + L1MB3 LINE L1 5341 6054 -129 402 232 0 42 chr1 169043086 169043181 -113150483 - MER58B DNA MER1_type -250 91 1 723 90 0 27 chr1 169043224 169043335 -113150329 + AluJb SINE Alu 199 306 -6 2466 87 0 0 chr1 169045637 169045937 -113147727 + AluSq SINE Alu 1 300 -13 1975 159 13 0 chr1 169046480 169046781 -113146883 + AluSx SINE Alu 1 305 -7 619 195 135 32 chr1 169047268 169047321 -113146343 - MER33 DNA MER1_type -2271 314 268 1376 133 149 26 chr1 169047321 169047521 -113146143 + MER44D DNA MER2_type 1 175 -2316 207 0 0 0 chr1 169047521 169047544 -113146120 + (TA)n Simple_repeat Simple_repeat 1 23 0 1376 133 149 26 chr1 169047544 169047645 -113146019 + MER44D DNA MER2_type 175 609 0 619 195 135 32 chr1 169047645 169047873 -113145791 - MER33 DNA MER1_type -2317 268 4 1903 149 28 7 chr1 169047922 169048211 -113145453 + AluJb SINE Alu 1 295 -17 1316 142 0 38 chr1 169048336 169048548 -113145116 - AluJo SINE Alu -24 288 85 1782 170 6 64 chr1 169048837 169049167 -113144497 - AluJb SINE Alu -1 311 1 1719 175 14 27 chr1 169049167 169049463 -113144201 - AluSx SINE Alu -19 293 1 2354 116 0 3 chr1 169049480 169049791 -113143873 - AluSg SINE Alu 0 310 1 2976 144 51 43 chr1 169049817 169050307 -113143357 - L1MA4 LINE L1 -11 6289 5792 1752 117 0 12 chr1 169050307 169050547 -113143117 - AluSg SINE Alu -18 292 56 2976 144 51 43 chr1 169050547 169050665 -113142999 - L1MA4 LINE L1 -508 5792 5676 249 210 62 12 chr1 169050721 169050802 -113142862 - L1MC5 LINE L1 -176 7785 7701 360 0 0 0 chr1 169050804 169050844 -113142820 + (TG)n Simple_repeat Simple_repeat 1 40 0 2236 112 3 3 chr1 169050872 169051168 -113142496 + AluSq SINE Alu 1 296 -17 2237 96 3 3 chr1 169051171 169051464 -113142200 + AluSc SINE Alu 1 293 -16 1652 178 3 39 chr1 169051697 169052006 -113141658 + AluJo SINE Alu 6 303 -9 844 165 0 7 chr1 169052114 169052249 -113141415 - AluSc SINE Alu -24 285 154 705 113 0 0 chr1 169052248 169052345 -113141319 - AluS SINE Alu -212 101 5 * 2126 104 19 7 chr1 169052384 169052693 -113140971 - AluSq SINE Alu 0 313 1 2397 55 0 19 chr1 169052931 169053241 -113140423 - AluY SINE Alu -7 304 1 205 254 36 45 chr1 169053783 169053827 -113139837 + MIR SINE MIR 154 197 -65 2100 108 10 0 chr1 169053827 169054124 -113139540 - AluSp SINE Alu -13 300 1 205 254 36 45 chr1 169054124 169054189 -113139475 + MIR SINE MIR 197 262 0 850 202 6 30 chr1 169054769 169054937 -113138727 + AluJb SINE Alu 129 292 -20 1382 136 43 96 chr1 169055198 169055521 -113138143 + AluJo SINE Alu 1 306 -6 759 111 0 0 chr1 169055523 169055622 -113138042 + AluS SINE Alu 3 101 -211 26 0 0 0 chr1 169056751 169056777 -113136887 + AT_rich Low_complexity Low_complexity 1 26 0 302 269 26 26 chr1 169057120 169057198 -113136466 - L2 LINE L2 -14 3299 3222 1078 321 177 35 chr1 169057348 169058520 -113135144 - L2 LINE L2 -362 2952 1615 543 113 0 0 chr1 169058889 169058969 -113134695 + AluJ SINE Alu 45 124 -188 1592 104 155 4 chr1 169058988 169059239 -113134425 + AluJb SINE Alu 1 289 -13 2170 108 0 13 chr1 169060578 169060894 -113132770 - AluSx SINE Alu 0 312 1 457 254 200 0 chr1 169061057 169061187 -113132477 + MER5A DNA MER1_type 31 186 -3 197 65 32 0 chr1 169062068 169062099 -113131565 + (TTA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr1 169064075 169064098 -113129566 + AT_rich Low_complexity Low_complexity 1 23 0 863 163 12 19 chr1 169066112 169066272 -113127392 + AluJ SINE Alu 129 287 -25 183 42 0 0 chr1 169069211 169069235 -113124429 + (CATCG)n Simple_repeat Simple_repeat 1 24 0 2311 74 0 3 chr1 169069354 169069663 -113124001 - AluSx SINE Alu -4 308 1 385 295 78 0 chr1 169069750 169069879 -113123785 - MIR SINE MIR -76 186 48 1634 116 113 0 chr1 169069897 169070014 -113123650 + AluJb SINE Alu 1 103 -209 189 0 0 0 chr1 169070014 169070035 -113123629 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1634 116 113 0 chr1 169070035 169070192 -113123472 + AluJb SINE Alu 103 306 -6 1407 196 45 7 chr1 169070423 169070714 -113122950 - MER67A LTR ERV1 0 543 242 250 204 82 0 chr1 169070681 169070730 -113122934 - MER67C LTR ERV1 -408 302 250 * 1267 141 27 65 chr1 169070749 169070917 -113122747 - AluJb SINE Alu -11 301 145 1934 128 0 49 chr1 169070917 169071245 -113122419 - AluSx SINE Alu 0 312 1 1267 141 27 65 chr1 169071245 169071339 -113122325 - AluJb SINE Alu -167 145 49 2043 133 0 13 chr1 169071340 169071655 -113122009 + AluSx SINE Alu 1 311 -1 550 172 32 19 chr1 169071655 169071812 -113121852 + GA-rich Low_complexity Low_complexity 1 159 0 333 87 0 0 chr1 169071835 169071881 -113121783 - AluJb SINE Alu -256 46 1 * 884 102 31 8 chr1 169071881 169072007 -113121657 - MER67A LTR ERV1 -315 228 100 30 27 0 0 chr1 169072025 169072062 -113121602 + AT_rich Low_complexity Low_complexity 1 37 0 1828 86 0 0 chr1 169072177 169072411 -113121253 - AluSq SINE Alu -77 236 3 1147 197 105 3 chr1 169072710 169073025 -113120639 - L1M4 LINE L1 -952 5194 4848 1843 160 3 3 chr1 169073025 169073312 -113120352 + AluJo SINE Alu 1 287 -25 1654 144 76 4 chr1 169073584 169073861 -113119803 - AluSx SINE Alu -15 297 1 24 0 0 0 chr1 169073862 169073886 -113119778 + AT_rich Low_complexity Low_complexity 1 24 0 2343 78 0 0 chr1 169073907 169074203 -113119461 - AluY SINE Alu -15 296 1 1962 119 10 0 chr1 169074203 169074498 -113119166 - AluSq SINE Alu -15 298 1 896 104 7 22 chr1 169074498 169074633 -113119031 - AluSg1 SINE Alu -176 133 1 1415 180 3 51 chr1 169075466 169075777 -113117887 - AluJb SINE Alu -16 296 1 354 261 80 83 chr1 169076458 169076772 -113116892 + L1MC5 LINE L1 7513 7825 -136 682 291 109 0 chr1 169077277 169077507 -113116157 - MIR SINE MIR -6 256 2 261 268 0 0 chr1 169077889 169077945 -113115719 + L2 LINE L2 3203 3258 -14 330 315 35 19 chr1 169077954 169078087 -113115577 + MIR SINE MIR 6 139 -69 1638 139 3 53 chr1 169078145 169078448 -113115216 + AluSx SINE Alu 20 307 -5 22 56 0 0 chr1 169078496 169078532 -113115132 + AT_rich Low_complexity Low_complexity 1 36 0 2126 123 0 0 chr1 169078807 169079108 -113114556 - AluSx SINE Alu -11 301 1 279 255 138 0 chr1 169079266 169079360 -113114304 - MIR SINE MIR -58 204 98 1704 146 17 7 chr1 169079365 169079653 -113114011 - AluJb SINE Alu -21 291 1 873 206 0 6 chr1 169079688 169079848 -113113816 - FRAM SINE Alu -7 159 1 1689 150 23 13 chr1 169079858 169080158 -113113506 - AluJo SINE Alu -9 303 1 2036 114 0 17 chr1 169080164 169080461 -113113203 - AluSx SINE Alu -20 292 1 2242 96 0 19 chr1 169080799 169081111 -113112553 - AluSp SINE Alu -7 306 1 419 195 0 0 chr1 169081704 169081786 -113111878 - AluJ/FRAM SINE Alu -1 301 220 1606 113 3 57 chr1 169081786 169082069 -113111595 - AluSq SINE Alu -45 268 1 2259 92 0 3 chr1 169082797 169083100 -113110564 - AluSx SINE Alu -9 303 2 27 0 0 0 chr1 169085498 169085525 -113108139 + AT_rich Low_complexity Low_complexity 1 27 0 646 199 37 0 chr1 169086447 169086583 -113107081 - FLAM_C SINE Alu -1 142 2 422 247 19 82 chr1 169086733 169086891 -113106773 + MIR SINE MIR 46 193 -69 447 19 0 0 chr1 169087126 169087178 -113106486 + (CA)n Simple_repeat Simple_repeat 2 53 0 1975 122 3 14 chr1 169087441 169087737 -113105927 + AluJb SINE Alu 1 293 -19 2174 91 3 7 chr1 169087739 169088036 -113105628 + AluSg SINE Alu 1 296 -14 2181 100 0 13 chr1 169088444 169088755 -113104909 - AluSc SINE Alu -2 307 1 2126 117 0 0 chr1 169088843 169089141 -113104523 - AluSx SINE Alu -9 303 6 827 159 90 0 chr1 169089141 169089286 -113104378 + AluSg/x SINE Alu 113 270 -40 312 27 0 0 chr1 169089286 169089323 -113104341 + (CA)n Simple_repeat Simple_repeat 2 38 0 552 134 126 24 chr1 169089324 169089451 -113104213 + Charlie1 DNA MER1_type 2420 2559 -202 206 32 32 0 chr1 169089462 169089493 -113104171 + (TA)n Simple_repeat Simple_repeat 2 33 0 2178 109 0 6 chr1 169089493 169089806 -113103858 - AluSx SINE Alu -1 311 1 26 0 0 0 chr1 169089806 169089832 -113103832 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 169089980 169090000 -113103664 + (A)n Simple_repeat Simple_repeat 1 20 0 971 135 16 67 chr1 169090003 169090079 -113103585 - L1M4 LINE L1 -1285 4861 4783 2342 66 0 7 chr1 169090079 169090381 -113103283 - AluY SINE Alu -11 300 1 971 135 16 67 chr1 169090381 169090497 -113103167 - L1M4 LINE L1 -1363 4783 4679 577 239 45 141 chr1 169090488 169090614 -113103050 - L1MCc LINE L1 -4575 2287 2151 * 1968 143 0 16 chr1 169090614 169090945 -113102719 - AluSx SINE Alu 0 312 2 577 239 45 141 chr1 169090945 169091073 -113102591 - L1MCc LINE L1 -4711 2151 2012 2166 113 13 3 chr1 169091073 169091382 -113102282 - AluSx SINE Alu 0 312 1 577 239 45 141 chr1 169091382 169092229 -113101435 - L1MCc LINE L1 -4850 2012 1165 1560 156 6 60 chr1 169092259 169092573 -113101091 - AluJo SINE Alu -15 297 1 1455 189 20 26 chr1 169093092 169093394 -113100270 + AluJb SINE Alu 1 300 -12 2042 104 0 0 chr1 169093397 169093708 -113099956 + AluSc SINE Alu 1 311 0 2252 101 0 0 chr1 169094191 169094488 -113099176 + AluSq SINE Alu 7 303 -10 418 268 159 28 chr1 169094489 169094811 -113098853 + L1ME3 LINE L1 5580 5948 -214 2397 56 3 0 chr1 169094982 169095284 -113098380 + AluY SINE Alu 1 303 -8 470 176 0 12 chr1 169095431 169095516 -113098148 - FAM SINE Alu -17 168 85 1539 137 73 0 chr1 169095533 169095766 -113097898 + L1M1 LINE L1 1759 2008 -5557 2075 86 0 27 chr1 169095766 169096111 -113097553 + AluSg SINE Alu 1 337 0 2242 98 7 0 chr1 169096111 169096418 -113097246 + AluSq SINE Alu 1 309 -4 306 261 100 0 chr1 169096526 169096656 -113097008 - L1ME4a LINE L1 -215 5906 5764 1071 143 0 6 chr1 169096656 169096817 -113096847 - FRAM SINE Alu -6 160 1 2170 81 7 3 chr1 169096822 169097143 -113096521 - AluSp SINE Alu 0 322 1 1237 170 27 8 chr1 169097145 169097404 -113096260 - AluJb SINE Alu -15 297 34 1807 141 7 20 chr1 169097404 169097709 -113095955 - AluJo SINE Alu -11 301 1 450 288 111 44 chr1 169097710 169098026 -113095638 - L1ME4a LINE L1 -2042 5766 5430 557 254 49 0 chr1 169098027 169098149 -113095515 - MER63A DNA MER1_type -25 185 58 1751 133 7 17 chr1 169098216 169098530 -113095134 + AluSx SINE Alu 1 311 0 524 81 92 0 chr1 169098543 169098630 -113095034 - L1MD1 LINE L1 -1 6241 6147 2360 100 0 0 chr1 169298688 169298999 -112894665 + AluSx SINE Alu 1 311 -1 1232 139 56 37 chr1 169299250 169299465 -112894199 - MER20 DNA MER1_type 0 219 1 31 0 0 0 chr1 169299716 169299747 -112893917 + AT_rich Low_complexity Low_complexity 1 31 0 1202 150 29 34 chr1 169299799 169299962 -112893702 - AluJo SINE Alu -11 301 138 2359 87 7 0 chr1 169299962 169300262 -112893402 - AluY SINE Alu -8 303 2 1202 150 29 34 chr1 169300262 169300305 -112893359 - AluJo SINE Alu -174 138 96 601 120 11 0 chr1 169300325 169300417 -112893247 - AluSx SINE Alu -7 303 211 1117 148 0 0 chr1 169300421 169300583 -112893081 - AluSx SINE Alu -150 162 1 628 270 22 38 chr1 169300718 169300903 -112892761 + MIR3 SINE MIR 20 201 -7 1834 108 124 0 chr1 169300946 169301205 -112892459 + AluSq SINE Alu 5 295 -18 1745 116 93 0 chr1 169301217 169301476 -112892188 + AluSg SINE Alu 3 285 -25 252 0 0 0 chr1 169301479 169301507 -112892157 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1885 73 4 0 chr1 169302051 169302285 -112891379 + AluSq SINE Alu 1 235 -78 718 188 0 51 chr1 169302360 169302498 -112891166 - FLAM_C SINE Alu 0 133 3 23 24 0 24 chr1 169302988 169303008 -112890656 + AT_rich Low_complexity Low_complexity 1 20 -20 900 172 23 17 chr1 169303008 169303182 -112890482 - FAM SINE Alu 0 175 1 23 24 0 24 chr1 169303182 169303202 -112890462 + AT_rich Low_complexity Low_complexity 20 40 0 1698 197 3 10 chr1 169303204 169303504 -112890160 + AluJo SINE Alu 1 298 -14 2239 69 10 10 chr1 169303505 169303817 -112889847 + AluY SINE Alu 1 311 0 1750 145 29 35 chr1 169303887 169304064 -112889600 - AluSx SINE Alu -3 309 132 2277 102 7 0 chr1 169304064 169304358 -112889306 - AluSx SINE Alu -16 296 1 2399 70 10 0 chr1 169304361 169304661 -112889003 - AluY SINE Alu -8 303 1 1750 145 29 35 chr1 169304661 169304790 -112888874 - AluSx SINE Alu -182 130 1 444 224 132 36 chr1 169304794 169305013 -112888651 + L1ME4a LINE L1 5706 5945 -176 1435 138 23 0 chr1 169305203 169305420 -112888244 + AluSp SINE Alu 79 300 -13 2198 96 4 0 chr1 169305446 169305754 -112887910 + AluSx SINE Alu 1 309 0 1682 115 4 8 chr1 169306311 169306554 -112887110 + AluSq SINE Alu 58 299 -14 1023 144 32 132 chr1 169307112 169307205 -112886459 - MER33 DNA MER1_type -2261 324 223 1933 131 3 32 chr1 169307205 169307519 -112886145 + AluSx SINE Alu 1 305 -7 1023 144 32 132 chr1 169307519 169307681 -112885983 - MER33 DNA MER1_type -2362 223 109 1987 150 3 0 chr1 169307681 169307975 -112885689 - AluJb SINE Alu -17 295 1 1023 144 32 132 chr1 169307975 169308059 -112885605 - MER33 DNA MER1_type -2476 109 18 2061 115 7 0 chr1 169308080 169308359 -112885305 - AluSx SINE Alu -31 281 1 2039 157 0 0 chr1 169308912 169309206 -112884458 - AluSx SINE Alu -18 294 1 2252 111 0 0 chr1 169309208 169309505 -112884159 - AluSq SINE Alu -16 297 1 28 0 0 0 chr1 169309507 169309535 -112884129 + AT_rich Low_complexity Low_complexity 1 28 0 743 207 0 0 chr1 169309545 169309661 -112884003 - FLAM_C SINE Alu -16 117 2 328 241 108 0 chr1 169309864 169309947 -112883717 - L2 LINE L2 0 3313 3222 1753 136 10 65 chr1 169310017 169310326 -112883338 + AluJb SINE Alu 1 292 -20 2682 140 45 51 chr1 169310329 169310627 -112883037 - L1MC3 LINE L1 -17 7768 7473 2362 90 0 0 chr1 169310627 169310926 -112882738 - AluSg SINE Alu -11 299 1 2682 140 45 51 chr1 169310926 169311155 -112882509 - L1MC3 LINE L1 -312 7473 7244 1962 161 0 0 chr1 169311283 169311582 -112882082 - AluSx SINE Alu -13 299 1 229 281 110 0 chr1 169312320 169312402 -112881262 + L1M4b LINE L1 1316 1406 -5453 2215 108 3 0 chr1 169312817 169313112 -112880552 + AluSg SINE Alu 1 296 -14 512 185 150 70 chr1 169313114 169313186 -112880478 + L1MC4 LINE L1 6800 6865 -978 2315 84 7 3 chr1 169313186 169313484 -112880180 + AluSq SINE Alu 10 308 -5 512 185 150 70 chr1 169313484 169313628 -112880036 + L1MC4 LINE L1 6865 7085 -758 1953 223 82 27 chr1 169313629 169313699 -112879965 + L1MC4 LINE L1 7239 7304 -738 1778 171 54 81 chr1 169313699 169313986 -112879678 - MLT1C LTR MaLR 0 467 174 2339 96 0 3 chr1 169313986 169314287 -112879377 - AluSx SINE Alu -12 300 1 1778 171 54 81 chr1 169314287 169314452 -112879212 - MLT1C LTR MaLR -293 174 26 2470 57 0 3 chr1 169314452 169314753 -112878911 - AluY SINE Alu -11 300 1 1778 171 54 81 chr1 169314753 169314779 -112878885 - MLT1C LTR MaLR -441 26 1 1953 223 82 27 chr1 169314779 169315233 -112878431 + L1MC4 LINE L1 7304 7792 -250 2038 98 40 0 chr1 169315239 169315514 -112878150 + AluSx SINE Alu 5 290 -22 198 0 0 0 chr1 169315518 169315540 -112878124 + (T)n Simple_repeat Simple_repeat 1 22 0 683 173 60 0 chr1 169315688 169315821 -112877843 - L1MB4 LINE L1 0 6180 6040 742 139 9 0 chr1 169315821 169315929 -112877735 - MLT1A1 LTR MaLR -256 109 1 837 171 123 0 chr1 169315929 169316116 -112877548 - L1MB4 LINE L1 -150 6030 5821 266 238 0 32 chr1 169316116 169316179 -112877485 - AluJ/monomer SINE Alu 0 302 242 3547 165 50 35 chr1 169316198 169316531 -112877133 - L1MB3 LINE L1 -7 6176 5850 2347 108 0 0 chr1 169316531 169316838 -112876826 + AluSq SINE Alu 1 307 -6 3547 165 50 35 chr1 169316838 169317220 -112876444 - L1MB3 LINE L1 -333 5850 5450 2320 72 10 0 chr1 169317373 169317664 -112876000 - AluSp SINE Alu -19 294 1 1269 177 24 0 chr1 169317714 169317923 -112875741 - AluJb SINE Alu -98 214 1 311 278 113 69 chr1 169317996 169318287 -112875377 - L1MEd LINE L1 -5194 925 622 1529 153 0 0 chr1 169318694 169318917 -112874747 + AluJb SINE Alu 38 260 -52 1945 119 61 0 chr1 169318936 169319213 -112874451 + AluSp SINE Alu 1 294 -19 305 259 0 0 chr1 169319670 169319751 -112873913 + AluSc SINE Alu 137 217 -82 2423 50 40 10 chr1 169319832 169320129 -112873535 - AluSx SINE Alu -5 307 2 21 57 0 0 chr1 169320347 169320382 -112873282 + AT_rich Low_complexity Low_complexity 1 35 0 1891 161 0 0 chr1 169320510 169320790 -112872874 - AluJo SINE Alu -27 285 6 2374 106 0 0 chr1 169320809 169321121 -112872543 - AluSx SINE Alu 0 312 1 2214 121 0 16 chr1 169321132 169321447 -112872217 - AluSg SINE Alu 0 310 1 1146 142 18 28 chr1 169321448 169321666 -112871998 - L1MB3 LINE L1 -42 6141 5926 339 207 60 40 chr1 169321665 169321815 -112871849 - L1M4 LINE L1 -2970 3176 3024 * 716 248 64 45 chr1 169321815 169322017 -112871647 - MIR SINE MIR -55 207 2 1604 181 37 0 chr1 169322188 169322483 -112871181 - AluJb SINE Alu 0 305 1 268 198 0 81 chr1 169322546 169322632 -112871032 + MIR SINE MIR 120 198 -64 2426 89 3 0 chr1 169322646 169322950 -112870714 - AluSp SINE Alu -8 305 1 21 0 0 0 chr1 169322973 169322994 -112870670 + AT_rich Low_complexity Low_complexity 1 21 0 694 262 111 18 chr1 169323081 169323306 -112870358 - MIR SINE MIR -6 256 11 22 0 0 0 chr1 169323382 169323404 -112870260 + AT_rich Low_complexity Low_complexity 1 22 0 446 275 7 29 chr1 169323574 169323712 -112869952 + MIR3 SINE MIR 10 144 -64 2352 95 7 0 chr1 169323726 169324030 -112869634 + AluSg SINE Alu 1 306 -4 2370 87 3 0 chr1 169324220 169324519 -112869145 + AluSp SINE Alu 1 300 -13 979 181 48 0 chr1 169324523 169324689 -112868975 - MER46A DNA MER2_type -59 177 4 523 250 125 49 chr1 169325566 169325830 -112867834 + MER102a DNA MER1_type 32 315 -15 208 91 0 45 chr1 169325917 169325961 -112867703 + (TTTTTA)n Simple_repeat Simple_repeat 6 47 0 1856 88 46 15 chr1 169325971 169326119 -112867545 - AluY SINE Alu -28 283 122 204 40 0 0 chr1 169326119 169326144 -112867520 + (TG)n Simple_repeat Simple_repeat 2 26 0 1856 88 46 15 chr1 169326144 169326255 -112867409 - AluY SINE Alu -189 122 16 516 185 0 74 chr1 169326314 169326422 -112867242 - FRAM SINE Alu -19 157 58 2424 50 10 3 chr1 169326536 169326837 -112866827 - AluY SINE Alu -8 303 1 394 163 112 20 chr1 169326865 169326963 -112866701 + L1MC4 LINE L1 7795 7901 -141 337 310 44 35 chr1 169327047 169327363 -112866301 + L1MEd LINE L1 979 1297 -4908 871 189 88 37 chr1 169327376 169327593 -112866071 + MLT1B LTR MaLR 1 228 -162 218 217 43 0 chr1 169327593 169327639 -112866025 + polypurine Low_complexity Low_complexity 4 51 0 522 198 135 68 chr1 169327646 169327898 -112865766 + L1MEd LINE L1 2103 2371 -4025 247 169 186 0 chr1 169327885 169327944 -112865720 + L1MEd LINE L1 3027 3096 -3119 * 864 153 7 36 chr1 169328042 169328179 -112865485 - FLAM_C SINE Alu 0 133 1 467 270 57 19 chr1 169328180 169328339 -112865325 + HAL1 LINE L1 1631 1795 -712 281 242 6 133 chr1 169328629 169328693 -112864971 + HAL1b LINE L1 746 817 -531 2118 136 0 3 chr1 169328693 169329001 -112864663 + AluSx SINE Alu 1 307 -5 281 242 6 133 chr1 169329001 169329101 -112864563 + HAL1b LINE L1 817 889 -459 546 243 67 7 chr1 169329175 169329363 -112864301 + HAL1b LINE L1 813 2398 -109 2411 87 3 0 chr1 169329528 169329827 -112863837 + AluSp SINE Alu 1 300 -13 860 92 125 0 chr1 169329906 169330026 -112863638 + AluSp SINE Alu 1 135 -178 2206 96 7 10 chr1 169330027 169330328 -112863336 + AluSp SINE Alu 1 300 -13 232 171 33 16 chr1 169330328 169330389 -112863275 + MIR SINE MIR 46 111 -107 514 139 12 12 chr1 169330393 169330479 -112863185 - AluJb SINE Alu -10 302 217 901 145 0 14 chr1 169330482 169330627 -112863037 - AluJb SINE Alu -164 148 6 25 0 0 0 chr1 169330967 169330992 -112862672 + AT_rich Low_complexity Low_complexity 1 25 0 2477 69 0 0 chr1 169331071 169331375 -112862289 - AluY SINE Alu -7 304 1 404 268 76 32 chr1 169331805 169331962 -112861702 + MIR SINE MIR 49 212 -50 1542 164 38 4 chr1 169331974 169332237 -112861427 - AluJo SINE Alu -20 292 21 529 266 24 0 chr1 169332314 169332438 -112861226 - L2 LINE L2 0 3313 3187 252 0 0 0 chr1 169332985 169333013 -112860651 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2473 42 3 45 chr1 169333126 169333438 -112860226 - AluY SINE Alu -12 299 1 257 268 49 12 chr1 169336437 169336519 -112857145 + L3 LINE CR1 635 719 -858 753 104 0 0 chr1 169336795 169336891 -112856773 + AluS SINE Alu 2 97 -215 387 138 0 0 chr1 169336894 169336952 -112856712 + AluS SINE Alu 40 97 -206 1104 220 76 0 chr1 169336955 169337191 -112856473 + AluJo SINE Alu 40 293 -19 652 164 0 52 chr1 169337668 169337784 -112855880 - AluJb SINE Alu -16 296 187 524 152 0 0 chr1 169337784 169337863 -112855801 + Tigger1 DNA MER2_type 2340 2418 0 867 159 67 15 chr1 169337945 169338029 -112855635 + Tigger3(Golem) DNA MER2_type 2697 2775 -263 2301 93 0 0 chr1 169338029 169338319 -112855345 + AluSc SINE Alu 1 290 -19 867 159 67 15 chr1 169338319 169338465 -112855199 + Tigger3(Golem) DNA MER2_type 2775 2955 -83 1449 184 15 4 chr1 169338589 169338856 -112854808 + AluJb SINE Alu 15 284 -28 942 116 52 19 chr1 169338873 169339028 -112854636 + L1MA3 LINE L1 6141 6300 -5 335 302 73 5 chr1 169339051 169339243 -112854421 + L1MDa LINE L1 1780 1984 -4556 186 0 57 29 chr1 169339258 169339293 -112854371 + (TA)n Simple_repeat Simple_repeat 1 36 0 2423 50 0 0 chr1 169339316 169339596 -112854068 - AluY SINE Alu -7 304 25 350 124 83 0 chr1 169339672 169339793 -112853871 + (TA)n Simple_repeat Simple_repeat 2 132 0 1895 130 4 7 chr1 169339949 169340225 -112853439 + AluSx SINE Alu 1 275 -37 2185 136 0 3 chr1 169340410 169340720 -112852944 + AluSx SINE Alu 1 309 -3 8376 126 70 17 chr1 169340813 169342192 -112851472 + Tigger1 DNA MER2_type 24 1474 -944 2400 61 7 7 chr1 169342196 169342492 -112851172 + AluY SINE Alu 1 296 -15 2182 100 10 13 chr1 169342497 169342796 -112850868 + AluSx SINE Alu 1 298 -14 801 145 0 36 chr1 169342800 169342938 -112850726 + FLAM_C SINE Alu 1 133 -10 1110 106 0 0 chr1 169342939 169343090 -112850574 + Tigger1 DNA MER2_type 1472 1622 -796 1280 104 6 17 chr1 169343090 169343263 -112850401 + AluSc SINE Alu 1 171 -138 1086 133 17 11 chr1 169343269 169343450 -112850214 + Tigger1 DNA MER2_type 2132 2313 -105 1781 178 0 0 chr1 169343464 169343756 -112849908 - AluJb SINE Alu -20 292 1 180 0 0 0 chr1 169343854 169343874 -112849790 + (A)n Simple_repeat Simple_repeat 1 20 0 2048 114 3 26 chr1 169343878 169344185 -112849479 + AluSg SINE Alu 1 300 -10 2264 100 3 13 chr1 169344220 169344529 -112849135 + AluSx SINE Alu 1 306 -6 1209 149 19 0 chr1 169344630 169344838 -112848826 - L1PB1 LINE L1 -1331 4815 4604 * 6157 139 9 28 chr1 169344837 169345688 -112847976 + L1PB1 LINE L1 4847 5713 -438 2306 85 7 0 chr1 169345688 169345983 -112847681 + AluSg SINE Alu 1 297 -13 6157 139 9 28 chr1 169345983 169346096 -112847568 + L1PB1 LINE L1 5713 5827 -324 315 0 0 0 chr1 169346096 169346131 -112847533 + (CA)n Simple_repeat Simple_repeat 2 36 0 6157 139 9 28 chr1 169346131 169346490 -112847174 + L1PB1 LINE L1 5827 6151 0 2009 118 37 0 chr1 169346616 169346912 -112846752 + AluSx SINE Alu 1 307 -5 509 296 88 89 chr1 169346916 169347147 -112846517 - L1MC4a LINE L1 -27 8015 7785 2223 98 3 13 chr1 169347147 169347452 -112846212 + AluSp SINE Alu 1 302 -11 509 296 88 89 chr1 169347452 169348003 -112845661 - L1MC4a LINE L1 -257 7785 7154 1644 162 50 20 chr1 169348007 169348310 -112845354 - AluJb SINE Alu 0 312 1 345 232 43 49 chr1 169348465 169348629 -112845035 - L1MEd LINE L1 -3952 2177 2015 1385 188 53 14 chr1 169348632 169348914 -112844750 - AluJo SINE Alu -7 305 13 1986 100 29 4 chr1 169348989 169349268 -112844396 - AluSx SINE Alu -22 290 5 1218 106 75 11 chr1 169349285 169349473 -112844191 - AluSg/x SINE Alu -4 308 109 2329 106 0 0 chr1 169349560 169349871 -112843793 - AluSx SINE Alu -1 311 1 840 135 8 30 chr1 169350049 169350182 -112843482 + AluJo SINE Alu 7 136 -176 824 251 105 97 chr1 169350202 169350973 -112842691 - L1MEd LINE L1 -4697 1613 802 2124 93 3 17 chr1 169350973 169351285 -112842379 - AluSx SINE Alu 0 308 1 824 251 105 97 chr1 169351285 169351529 -112842135 - L1MEd LINE L1 -5508 802 561 229 250 8 129 chr1 169351636 169351760 -112841904 - L1MEd LINE L1 -5925 194 86 2181 173 113 60 chr1 169351770 169352151 -112841513 + L1MC3 LINE L1 7076 7435 -350 1821 141 0 45 chr1 169352151 169352441 -112841223 + AluJb SINE Alu 5 281 -31 225 0 0 0 chr1 169352448 169352473 -112841191 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2181 173 113 60 chr1 169352473 169352593 -112841071 + L1MC3 LINE L1 7440 7552 -233 2127 94 35 0 chr1 169352593 169352879 -112840785 + AluSg SINE Alu 1 296 -14 2181 173 113 60 chr1 169352879 169352969 -112840695 + L1MC3 LINE L1 7552 7708 -77 252 86 0 0 chr1 169352974 169353009 -112840655 + (TG)n Simple_repeat Simple_repeat 2 36 0 232 270 22 11 chr1 169353015 169353104 -112840560 - L1MC4 LINE L1 -1339 6703 6614 * 252 281 0 22 chr1 169353099 169353188 -112840476 + L1MC4 LINE L1 6617 6703 -1339 405 177 0 0 chr1 169353196 169353275 -112840389 + L1MD3 LINE L1 7917 7995 0 1950 159 0 9 chr1 169353284 169353599 -112840065 + AluJo SINE Alu 1 312 0 2329 103 6 0 chr1 169353612 169353923 -112839741 + AluSq SINE Alu 1 313 0 4436 153 19 3 chr1 169354254 169354986 -112838678 + Tigger2 DNA MER2_type 1 744 -1974 946 167 0 19 chr1 169355037 169355193 -112838471 - AluJo SINE Alu -159 153 1 897 123 0 36 chr1 169355222 169355360 -112838304 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr1 169355982 169356003 -112837661 + AT_rich Low_complexity Low_complexity 1 21 0 1557 159 19 65 chr1 169356010 169356318 -112837346 - AluJb SINE Alu -18 294 1 913 209 18 6 chr1 169356461 169356624 -112837040 - FAM SINE Alu -10 165 1 1905 95 27 0 chr1 169356689 169356813 -112836851 + AluSq SINE Alu 1 120 -193 387 0 0 0 chr1 169356813 169356856 -112836808 + (CA)n Simple_repeat Simple_repeat 2 44 0 1905 95 27 0 chr1 169356856 169356994 -112836670 + AluSq SINE Alu 120 270 -43 405 58 0 0 chr1 169357002 169357054 -112836610 + (TAA)n Simple_repeat Simple_repeat 1 52 0 378 287 93 7 chr1 169357354 169357504 -112836160 - MER103 DNA DNA -2 164 2 2313 84 0 23 chr1 169357879 169358189 -112835475 + AluSx SINE Alu 1 303 -9 1718 188 0 7 chr1 169358201 169358505 -112835159 + AluJo SINE Alu 1 302 -10 781 153 0 8 chr1 169358509 169358627 -112835037 + AluJb SINE Alu 1 117 -195 980 191 0 29 chr1 169358633 169358806 -112834858 - FAM SINE Alu -7 168 1 1805 104 96 18 chr1 169358837 169359143 -112834521 + AluSq SINE Alu 1 313 0 328 270 45 27 chr1 169359440 169359551 -112834113 - MIR SINE MIR -12 250 138 2522 70 0 0 chr1 169359692 169359991 -112833673 + AluY SINE Alu 1 299 -12 496 246 47 95 chr1 169360046 169360063 -112833601 - L2 LINE L2 0 3313 3297 1598 170 17 7 chr1 169360063 169360351 -112833313 - AluJo SINE Alu -17 295 5 496 246 47 95 chr1 169360351 169360544 -112833120 - L2 LINE L2 -16 3297 3113 2204 87 13 7 chr1 169360544 169360844 -112832820 + AluSc SINE Alu 1 302 -7 244 125 14 9 chr1 169360848 169361083 -112832581 + AluSx SINE Alu 1 213 -90 221 235 72 52 chr1 169361093 169361214 -112832450 - L2 LINE L2 -189 3124 3000 556 160 28 0 chr1 169361553 169361659 -112832005 - Charlie1 DNA MER1_type -16 2745 2637 1072 75 0 8 chr1 169361659 169361793 -112831871 + AluSc SINE Alu 1 133 -176 2332 89 3 16 chr1 169361794 169362107 -112831557 + AluSp SINE Alu 2 310 -3 1239 138 5 20 chr1 169362265 169362460 -112831204 - AluJo SINE Alu -119 193 2 22 0 0 0 chr1 169362500 169362522 -112831142 + AT_rich Low_complexity Low_complexity 1 22 0 579 265 113 65 chr1 169362654 169363032 -112830632 - L1M4 LINE L1 -1520 4626 4268 945 216 98 5 chr1 169363032 169363236 -112830428 + MER58A DNA MER1_type 2 224 0 579 265 113 65 chr1 169363236 169363312 -112830352 - L1M4 LINE L1 -1878 4268 4197 2116 135 0 0 chr1 169363312 169363609 -112830055 - AluSx SINE Alu -15 297 1 579 265 113 65 chr1 169363609 169363737 -112829927 - L1M4 LINE L1 -1949 4197 4015 615 293 40 84 chr1 169364064 169364225 -112829439 + MIR SINE MIR 2 148 -114 2336 66 7 26 chr1 169364225 169364528 -112829136 + AluSp SINE Alu 1 297 -16 615 293 40 84 chr1 169364528 169364639 -112829025 + MIR SINE MIR 148 262 0 2055 85 14 18 chr1 169365121 169365423 -112828241 - AluY SINE Alu 0 301 1 335 256 0 0 chr1 169365474 169365556 -112828108 + MER103 DNA DNA 84 165 -1 2351 110 0 0 chr1 169365886 169366273 -112827391 + AluY SINE Alu 1 387 0 254 306 10 10 chr1 169366696 169366794 -112826870 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 2219 123 0 16 chr1 169367250 169367567 -112826097 - AluSx SINE Alu 0 312 1 1792 149 23 19 chr1 169368444 169368753 -112824911 - AluJo SINE Alu -2 310 1 2039 97 14 24 chr1 169368798 169369114 -112824550 - AluSq SINE Alu 0 313 1 25 0 0 0 chr1 169369116 169369141 -112824523 + AT_rich Low_complexity Low_complexity 1 25 0 486 308 139 14 chr1 169369702 169369910 -112823754 + MIR SINE MIR 6 239 -23 874 163 14 20 chr1 169370082 169370214 -112823450 - AluSg/x SINE Alu -45 265 133 2242 113 3 0 chr1 169370214 169370514 -112823150 - AluSp SINE Alu -12 301 1 874 163 14 20 chr1 169370514 169370528 -112823136 - AluSg/x SINE Alu -177 133 120 2388 80 0 7 chr1 169370540 169370839 -112822825 - AluSp SINE Alu -16 297 1 229 234 0 0 chr1 169371138 169371185 -112822479 + T-rich Low_complexity Low_complexity 1 47 0 2043 124 10 0 chr1 169372023 169372314 -112821350 - AluSx SINE Alu -18 294 1 2289 101 7 3 chr1 169372324 169372630 -112821034 - AluSx SINE Alu 0 312 6 2313 96 7 3 chr1 169372662 169372965 -112820699 - AluSx SINE Alu -8 304 1 280 250 50 0 chr1 169372976 169373056 -112820608 - MIR SINE MIR -13 249 166 871 230 37 26 chr1 169373056 169373247 -112820417 + AluJb SINE Alu 75 267 -45 735 133 46 46 chr1 169373250 169373401 -112820263 + MLT1B LTR MaLR 240 390 0 888 196 41 48 chr1 169373407 169373659 -112820005 + L1MC4 LINE L1 7803 7995 0 1574 254 56 41 chr1 169373660 169374198 -112819466 + L2 LINE L2 2535 3085 -228 2295 99 13 0 chr1 169374198 169374500 -112819164 + AluSx SINE Alu 1 306 -6 1574 254 56 41 chr1 169374500 169374733 -112818931 + L2 LINE L2 3085 3313 0 294 219 61 12 chr1 169375339 169375421 -112818243 + L1ME LINE L1 5706 5791 -330 2231 95 37 0 chr1 169375693 169375988 -112817676 + AluSx SINE Alu 1 306 -6 810 286 0 0 chr1 169376054 169376236 -112817428 + AluJb SINE Alu 117 298 -14 192 354 0 0 chr1 169376240 169376305 -112817359 + MIR3 SINE MIR 135 199 -9 2315 97 3 3 chr1 169377132 169377431 -112816233 + AluSp SINE Alu 1 299 -14 1781 156 28 3 chr1 169377448 169377730 -112815934 + AluSx SINE Alu 1 289 -23 3827 158 64 3 chr1 169377819 169378477 -112815187 - MER44D DNA MER2_type 0 605 36 21 0 0 0 chr1 169378730 169378751 -112814913 + AT_rich Low_complexity Low_complexity 1 21 0 623 167 0 146 chr1 169379379 169379523 -112814141 + FLAM_A SINE Alu 1 123 -10 1775 172 7 16 chr1 169379598 169379906 -112813758 + AluJb SINE Alu 1 305 -7 248 267 48 19 chr1 169380033 169380138 -112813526 - L1M4 LINE L1 -2680 3466 3359 1613 153 60 11 chr1 169380211 169380492 -112813172 + AluSx SINE Alu 1 295 -17 2189 140 49 17 chr1 169380495 169380902 -112812762 + L1MB3 LINE L1 5764 6183 0 323 205 53 33 chr1 169381012 169381151 -112812513 - L1M4 LINE L1 -327 5851 5713 2485 63 7 3 chr1 169381160 169381463 -112812201 - AluSp SINE Alu -9 304 1 1569 190 8 0 chr1 169381489 169381752 -112811912 - AluJo SINE Alu -47 265 1 230 242 32 0 chr1 169381763 169381825 -112811839 - L1M4 LINE L1 -433 5729 5666 2199 79 7 17 chr1 169381910 169382202 -112811462 + AluSg1 SINE Alu 21 309 0 2370 77 3 0 chr1 169382207 169382505 -112811159 + AluY SINE Alu 3 301 -10 755 197 0 0 chr1 169382528 169382650 -112811014 + FRAM SINE Alu 24 145 -31 2152 107 0 10 chr1 169382764 169383063 -112810601 - AluSg SINE Alu -2 308 13 2031 121 10 16 chr1 169383076 169383381 -112810283 - AluSx SINE Alu -9 303 1 571 177 43 21 chr1 169383381 169383522 -112810142 - Charlie1 DNA MER1_type -191 2570 2427 457 278 23 23 chr1 169383628 169383761 -112809903 + MIR SINE MIR 4 136 -126 31 0 0 0 chr1 169384180 169384211 -112809453 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr1 169384226 169384260 -112809404 + AT_rich Low_complexity Low_complexity 1 34 0 2489 54 7 0 chr1 169384463 169384758 -112808906 - AluY SINE Alu -14 297 1 2317 104 10 0 chr1 169384840 169385148 -112808516 - AluSx SINE Alu -1 311 1 2552 40 0 13 chr1 169385277 169385575 -112808089 + AluY SINE Alu 1 294 -17 4341 195 45 5 chr1 169387337 169388158 -112805506 - MER21B LTR ERV1 -9 854 1 304 200 0 0 chr1 169388215 169388285 -112805379 + L2 LINE L2 2156 2225 -1089 463 151 57 19 chr1 169388293 169388399 -112805265 + L1MB8 LINE L1 6067 6176 -2 1748 261 76 54 chr1 169388399 169388771 -112804893 + L2 LINE L2 2324 2686 -627 2446 90 0 0 chr1 169388771 169389072 -112804592 + AluSx SINE Alu 2 302 -10 1748 261 76 54 chr1 169389072 169389558 -112804106 + L2 LINE L2 2686 3204 -109 372 22 0 0 chr1 169389563 169389608 -112804056 + (TG)n Simple_repeat Simple_repeat 2 46 0 1038 118 65 0 chr1 169389608 169389761 -112803903 - AluSg/x SINE Alu -21 289 127 484 196 31 21 chr1 169389761 169389858 -112803806 + L2 LINE L2 3200 3297 -16 1253 193 11 67 chr1 169390307 169390428 -112803236 + MIR SINE MIR 4 130 -132 2276 84 3 22 chr1 169390428 169390739 -112802925 + AluY SINE Alu 1 305 -6 1253 193 11 67 chr1 169390739 169390887 -112802777 + MIR SINE MIR 130 258 -4 1911 159 3 7 chr1 169391225 169391533 -112802131 + AluSx SINE Alu 5 311 -1 226 289 44 11 chr1 169391741 169391831 -112801833 - MIR SINE MIR -124 138 46 1447 141 53 71 chr1 169391889 169392017 -112801647 + AluJb SINE Alu 3 132 -180 2322 112 0 3 chr1 169392017 169392329 -112801335 + AluSx SINE Alu 1 311 -1 1447 141 53 71 chr1 169392329 169392342 -112801322 + AluJb SINE Alu 132 144 -168 2388 31 37 74 chr1 169392342 169392665 -112800999 + AluY SINE Alu 1 311 0 1447 141 53 71 chr1 169392665 169392805 -112800859 + AluJb SINE Alu 144 280 -32 275 303 13 13 chr1 169393011 169393087 -112800577 - L2 LINE L2 -14 3258 3183 2046 117 0 40 chr1 169393201 169393345 -112800319 + AluSx SINE Alu 1 128 -184 2298 106 0 7 chr1 169393345 169393648 -112800016 + AluSq SINE Alu 3 303 -10 2046 117 0 40 chr1 169393648 169393801 -112799863 + AluSx SINE Alu 128 286 -26 243 79 0 0 chr1 169393801 169393839 -112799825 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr1 169393879 169393900 -112799764 + AT_rich Low_complexity Low_complexity 1 21 0 347 312 64 23 chr1 169393963 169394136 -112799528 - L2 LINE L2 -449 2865 2686 1975 79 0 16 chr1 169394147 169394399 -112799265 + AluSg/x SINE Alu 65 312 0 275 295 114 0 chr1 169395355 169395460 -112798204 + MIR SINE MIR 49 165 -97 2299 71 0 7 chr1 169396160 169396454 -112797210 + AluSq SINE Alu 1 292 -21 234 0 0 0 chr1 169397370 169397396 -112796268 + (CGG)n Simple_repeat Simple_repeat 2 27 0 440 257 150 118 chr1 169398807 169398984 -112794680 - L2 LINE L2 0 3313 3143 192 152 0 0 chr1 169398984 169399017 -112794647 + (TG)n Simple_repeat Simple_repeat 1 33 0 440 257 150 118 chr1 169399017 169399176 -112794488 - L2 LINE L2 -166 3147 2932 1359 197 0 66 chr1 169399176 169399481 -112794183 - AluJo SINE Alu -17 285 1 4374 127 39 15 chr1 169399529 169399984 -112793680 - L1MC1 LINE L1 0 6333 5852 2246 78 0 3 chr1 169399984 169400278 -112793386 + AluSg SINE Alu 1 293 -17 4374 127 39 15 chr1 169400278 169400561 -112793103 - L1MC1 LINE L1 -481 5852 5577 1948 108 0 66 chr1 169400563 169400697 -112792967 + AluSq SINE Alu 1 142 -171 1961 123 0 3 chr1 169400697 169400982 -112792682 + AluSg SINE Alu 1 284 -26 1948 108 0 66 chr1 169400982 169401001 -112792663 + AluSq SINE Alu 142 161 -152 180 111 0 0 chr1 169401001 169401028 -112792636 + (TAAAA)n Simple_repeat Simple_repeat 5 31 0 1948 108 0 66 chr1 169401028 169401206 -112792458 + AluSq SINE Alu 161 311 -2 1220 116 6 0 chr1 169401208 169401381 -112792283 + AluSp SINE Alu 1 174 -139 2649 190 176 47 chr1 169401390 169401565 -112792099 - L1MC1 LINE L1 -741 5592 5441 1998 100 39 0 chr1 169401565 169401846 -112791818 - AluSp SINE Alu -15 298 7 2116 108 3 0 chr1 169401852 169402147 -112791517 - AluSp SINE Alu -17 296 1 2649 190 176 47 chr1 169402147 169402230 -112791434 - L1MC1 LINE L1 -896 5437 5366 2254 65 17 0 chr1 169402230 169402521 -112791143 - AluY SINE Alu -15 296 1 1956 122 7 0 chr1 169402522 169402809 -112790855 - AluSx SINE Alu -18 294 6 2649 190 176 47 chr1 169402809 169402932 -112790732 - L1MC1 LINE L1 -967 5366 5260 1957 129 3 3 chr1 169402932 169403227 -112790437 - AluSx SINE Alu -17 295 1 2649 190 176 47 chr1 169403227 169403350 -112790314 - L1MC1 LINE L1 -1073 5260 5154 1900 127 14 0 chr1 169403350 169403642 -112790022 + AluSg SINE Alu 1 296 -14 2649 190 176 47 chr1 169403642 169403924 -112789740 - L1MC1 LINE L1 -1179 5154 4910 2146 99 7 0 chr1 169403924 169404217 -112789447 + AluSp SINE Alu 1 295 -18 2044 105 0 7 chr1 169404217 169404531 -112789133 + AluSx SINE Alu 1 312 0 2649 190 176 47 chr1 169404218 169404601 -112789063 - L1MC1 LINE L1 -1423 4910 4508 1250 153 183 46 chr1 169404601 169404755 -112788909 - AluJb SINE Alu -4 298 167 1750 162 0 10 chr1 169404755 169405064 -112788600 + AluJb SINE Alu 1 306 -6 1250 153 183 46 chr1 169405064 169405171 -112788493 - AluJb SINE Alu -135 167 1 2649 190 176 47 chr1 169405171 169405453 -112788211 - L1MC1 LINE L1 -1825 4508 4264 2261 74 7 0 chr1 169405587 169405884 -112787780 - AluSg SINE Alu -11 299 1 432 263 115 46 chr1 169405992 169406209 -112787455 + MIR SINE MIR 2 233 -29 2076 108 7 0 chr1 169406604 169406901 -112786763 - AluSp SINE Alu -14 299 1 2011 89 11 0 chr1 169406912 169407192 -112786472 - AluSc SINE Alu -9 300 18 1987 121 10 3 chr1 169407208 169407506 -112786158 - AluSq SINE Alu -13 300 1 2276 85 0 3 chr1 169407563 169407868 -112785796 + AluSc SINE Alu 1 304 -5 237 65 0 0 chr1 169408676 169408707 -112784957 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 2345 55 3 0 chr1 169409355 169409648 -112784016 - AluY SINE Alu -17 294 1 1488 186 3 46 chr1 169410222 169410528 -112783136 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr1 169410658 169410681 -112782983 + AT_rich Low_complexity Low_complexity 1 23 0 2128 104 0 0 chr1 169410762 169411051 -112782613 - AluSg SINE Alu -21 289 1 1983 139 0 0 chr1 169411057 169411351 -112782313 - AluJb SINE Alu -12 300 7 240 69 0 0 chr1 169411479 169411508 -112782156 + U6 snRNA snRNA 2 30 -77 2130 92 20 0 chr1 169411538 169411833 -112781831 + AluSp SINE Alu 1 301 -12 2180 77 0 0 chr1 169411839 169412111 -112781553 + AluSp SINE Alu 1 272 -41 31 0 0 0 chr1 169412129 169412160 -112781504 + GC_rich Low_complexity Low_complexity 1 31 0 225 227 13 80 chr1 169412359 169412434 -112781230 - MIR SINE MIR -125 137 68 226 360 22 0 chr1 169413067 169413156 -112780508 - L2 LINE L2 0 3272 3182 2244 94 3 3 chr1 169413286 169413593 -112780071 + AluSq SINE Alu 7 313 0 2059 107 23 3 chr1 169413655 169413955 -112779709 - AluSx SINE Alu -6 306 1 1262 150 93 72 chr1 169414067 169414315 -112779349 + MER47A DNA MER2_type 26 284 -2039 2032 110 10 0 chr1 169414315 169414607 -112779057 - AluSx SINE Alu -17 295 1 1262 150 93 72 chr1 169414607 169414692 -112778972 + MER47A DNA MER2_type 284 366 0 461 151 12 0 chr1 169414712 169414798 -112778866 + (TG)n Simple_repeat Simple_repeat 2 88 0 28 29 0 0 chr1 169414877 169414912 -112778752 + AT_rich Low_complexity Low_complexity 1 35 0 1970 130 0 17 chr1 169414950 169415251 -112778413 - AluJb SINE Alu -16 296 1 277 203 54 68 chr1 169415251 169415325 -112778339 - L1ME3A LINE L1 -62 6108 6036 2122 92 7 0 chr1 169416407 169416712 -112776952 + AluSq SINE Alu 1 307 0 22 0 0 0 chr1 169418786 169418808 -112774856 + AT_rich Low_complexity Low_complexity 1 22 0 1423 102 0 0 chr1 169418813 169418999 -112774665 - AluSg/x SINE Alu -39 273 88 692 174 0 0 chr1 169419078 169419187 -112774477 + FLAM_C SINE Alu 2 110 -33 1860 96 64 7 chr1 169419225 169419507 -112774157 + AluSg SINE Alu 1 298 -12 2118 107 3 0 chr1 169419518 169419816 -112773848 + AluSp SINE Alu 1 299 -14 2118 101 0 44 chr1 169420224 169420541 -112773123 - AluSx SINE Alu -9 303 1 1564 168 0 36 chr1 169420810 169421114 -112772550 + AluJo SINE Alu 1 293 -19 2260 96 0 3 chr1 169421161 169421463 -112772201 - AluSp SINE Alu -11 302 2 207 0 0 0 chr1 169421464 169421487 -112772177 + (T)n Simple_repeat Simple_repeat 1 23 0 1719 87 0 29 chr1 169421589 169421831 -112771833 + AluSc SINE Alu 51 285 -24 189 0 0 0 chr1 169421833 169421854 -112771810 + (TG)n Simple_repeat Simple_repeat 2 22 0 2241 87 3 0 chr1 169421960 169422260 -112771404 - AluY SINE Alu -10 301 1 1814 149 0 3 chr1 169422356 169422652 -112771012 + AluSq SINE Alu 1 295 -18 2276 88 3 3 chr1 169422652 169422959 -112770705 + AluSp SINE Alu 1 307 -6 1737 169 16 3 chr1 169423222 169423530 -112770134 - AluJb SINE Alu 0 312 1 740 183 8 0 chr1 169423533 169423659 -112770005 - AluJo/FLAM SINE Alu -174 128 2 373 300 0 0 chr1 169423756 169423846 -112769818 - MER3 DNA MER1_type -119 90 1 1438 187 78 0 chr1 169424336 169424619 -112769045 + AluSx SINE Alu 1 305 -7 2239 99 0 3 chr1 169424620 169424922 -112768742 + AluSp SINE Alu 2 302 -11 1564 168 0 36 chr1 169424969 169425273 -112768391 - AluJo SINE Alu -19 293 1 2144 98 0 44 chr1 169425542 169425859 -112767805 + AluSx SINE Alu 1 303 -9 2110 108 3 0 chr1 169426270 169426567 -112767097 - AluSp SINE Alu -15 298 1 1770 63 55 24 chr1 169426580 169426834 -112766830 - AluY SINE Alu -12 299 38 2448 53 0 3 chr1 169427023 169427325 -112766339 + AluY SINE Alu 1 301 -10 33 25 0 0 chr1 169427564 169427604 -112766060 + AT_rich Low_complexity Low_complexity 1 40 0 2077 95 11 0 chr1 169427604 169427889 -112765775 - AluSq SINE Alu -24 289 2 3092 146 25 15 chr1 169427939 169428304 -112765360 + MER1A DNA MER1_type 45 405 -2297 1857 130 0 40 chr1 169428304 169428604 -112765060 + AluSg SINE Alu 7 294 -16 2135 100 3 0 chr1 169428606 169428906 -112764758 + AluSp SINE Alu 4 304 -9 3092 146 25 15 chr1 169428906 169429017 -112764647 + MER1A DNA MER1_type 405 529 0 1173 185 22 0 chr1 169429499 169429721 -112763943 + AluJo SINE Alu 1 227 -85 1316 132 175 0 chr1 169429746 169430003 -112763661 + AluSx SINE Alu 1 302 -10 1824 161 0 3 chr1 169430053 169430345 -112763319 - AluJb SINE Alu -21 291 1 1983 100 27 23 chr1 169430789 169431090 -112762574 - AluSx SINE Alu -10 302 1 183 162 0 0 chr1 169431433 169431470 -112762194 + (CA)n Simple_repeat Simple_repeat 2 38 0 541 265 133 28 chr1 169431906 169432117 -112761547 + MIR SINE MIR 3 235 -27 2448 60 0 0 chr1 169432127 169432426 -112761238 - AluY SINE Alu -12 299 1 2069 127 0 6 chr1 169432704 169433018 -112760646 + AluSx SINE Alu 1 312 0 1947 111 0 24 chr1 169433032 169433345 -112760319 + AluSg SINE Alu 1 306 0 2233 89 0 7 chr1 169433352 169433655 -112760009 + AluSg SINE Alu 1 301 -9 2123 93 0 0 chr1 169433715 169433994 -112759670 + AluY SINE Alu 1 279 -32 1718 160 21 0 chr1 169434021 169434308 -112759356 + AluJb SINE Alu 1 293 -19 1985 131 13 0 chr1 169434310 169434608 -112759056 + AluSx SINE Alu 1 302 -10 1911 141 3 0 chr1 169435041 169435339 -112758325 + AluSx SINE Alu 1 299 -13 855 118 0 22 chr1 169435384 169435520 -112758144 + AluSq/x SINE Alu 1 133 -179 2217 111 0 0 chr1 169435523 169435830 -112757834 + AluSq SINE Alu 1 307 -6 187 273 76 0 chr1 169436537 169436603 -112757061 + L2 LINE L2 3140 3210 -62 2242 117 0 0 chr1 169437012 169437321 -112756343 + AluSg SINE Alu 1 309 -1 519 181 0 0 chr1 169437517 169437600 -112756064 - FRAM/FAM SINE Alu -98 78 1 1957 127 20 7 chr1 169439535 169439827 -112753837 + AluSx SINE Alu 1 296 -16 194 308 75 37 chr1 169440119 169440226 -112753438 - L3b LINE CR1 -18 1565 1455 2296 72 0 13 chr1 169440304 169440608 -112753056 + AluSg SINE Alu 1 300 -10 1678 157 32 0 chr1 169440740 169441020 -112752644 - AluSx SINE Alu -20 292 4 1260 122 20 0 chr1 169441020 169441216 -112752448 + AluSg/x SINE Alu 111 310 0 2173 104 0 0 chr1 169441217 169441516 -112752148 + AluSx SINE Alu 1 299 -13 577 219 0 39 chr1 169442057 169442185 -112751479 - L2 LINE L2 -4 3309 3187 211 195 24 0 chr1 169442876 169442917 -112750747 + (CCG)n Simple_repeat Simple_repeat 2 43 0 1804 132 11 0 chr1 169443119 169443392 -112750272 - AluSx SINE Alu -36 276 1 325 164 0 33 chr1 169443397 169443458 -112750206 - Alu SINE Alu -9 291 233 1804 145 0 14 chr1 169443510 169443799 -112749865 - AluSx SINE Alu -27 285 1 956 176 21 5 chr1 169443805 169443993 -112749671 - L1M4 LINE L1 -1112 5034 4844 2024 107 17 7 chr1 169443993 169444283 -112749381 + AluSg SINE Alu 1 293 -17 1961 117 16 10 chr1 169444284 169444418 -112749246 + AluSp SINE Alu 2 134 -179 2239 91 3 0 chr1 169444418 169444727 -112748937 + AluY SINE Alu 1 310 -1 1961 117 16 10 chr1 169444727 169444899 -112748765 + AluSp SINE Alu 134 310 -3 2173 104 0 0 chr1 169444899 169445198 -112748466 + AluSx SINE Alu 1 299 -13 577 219 0 39 chr1 169445738 169445866 -112747798 - L2 LINE L2 -4 3309 3187 211 195 24 0 chr1 169446558 169446599 -112747065 + (CCG)n Simple_repeat Simple_repeat 2 43 0 2534 26 0 10 chr1 169446760 169447064 -112746600 - AluY SINE Alu -10 301 1 346 23 0 0 chr1 169447256 169447299 -112746365 + AluY SINE Alu 1 43 -259 1744 66 163 4 chr1 169447413 169447670 -112745994 - AluSc SINE Alu -1 298 1 2070 105 3 10 chr1 169448227 169448523 -112745141 + AluSx SINE Alu 1 294 -18 295 280 182 0 chr1 169448557 169448689 -112744975 + MIR SINE MIR 53 208 -54 253 222 0 0 chr1 169448689 169448743 -112744921 + L1 LINE L1 4765 4818 -1328 2235 75 3 0 chr1 169448743 169449037 -112744627 + AluY SINE Alu 1 295 -16 747 152 36 0 chr1 169449124 169449262 -112744402 - MLT1A1 LTR MaLR 0 365 223 654 214 0 0 chr1 169449386 169449503 -112744161 + FRAM SINE Alu 28 144 -32 2062 123 0 0 chr1 169449503 169449795 -112743869 - AluSx SINE Alu -20 292 1 2183 81 7 3 chr1 169449808 169450104 -112743560 - AluY SINE Alu -14 297 1 842 206 37 5 chr1 169450134 169450323 -112743341 + L1ME1 LINE L1 3915 4109 -2037 1529 136 9 9 chr1 169450347 169450575 -112743089 + MER1B DNA MER1_type 43 270 -69 2468 200 161 29 chr1 169450600 169451229 -112742435 + L1ME1 LINE L1 4113 4876 -1270 2217 101 0 0 chr1 169451229 169451527 -112742137 - AluSx SINE Alu -14 298 1 2468 200 161 29 chr1 169451527 169451716 -112741948 + L1ME1 LINE L1 4876 5039 -1107 1420 174 7 11 chr1 169451716 169451991 -112741673 + AluJo SINE Alu 19 292 -20 379 225 77 53 chr1 169452004 169452159 -112741505 + L1ME1 LINE L1 5029 5190 -956 1894 129 3 0 chr1 169452159 169452446 -112741218 + AluSx SINE Alu 1 288 -24 379 225 77 53 chr1 169452446 169452459 -112741205 + L1ME1 LINE L1 5190 5201 -945 213 39 0 0 chr1 169452462 169452488 -112741176 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2194 71 3 0 chr1 169452506 169452829 -112740835 + AluY SINE Alu 1 324 0 904 148 0 90 chr1 169452832 169453021 -112740643 + AluSg/x SINE Alu 127 298 -14 1164 134 0 30 chr1 169453066 169453267 -112740397 + AluSg/x SINE Alu 107 301 -9 1174 221 169 20 chr1 169453267 169453675 -112739989 + L1ME1 LINE L1 5693 6161 -5 2010 144 0 0 chr1 169453737 169454043 -112739621 + AluSx SINE Alu 1 306 -6 1210 144 19 0 chr1 169454144 169454352 -112739312 - L1PB1 LINE L1 -1331 4815 4604 * 3045 152 8 27 chr1 169454351 169455202 -112738462 + L1PB1 LINE L1 4847 5688 -463 1906 87 8 4 chr1 169455202 169455467 -112738197 + AluSg SINE Alu 1 266 -44 2726 110 10 12 chr1 169455565 169455613 -112738051 + L1PB1 LINE L1 5745 5792 -359 405 0 0 0 chr1 169455613 169455658 -112738006 + (CA)n Simple_repeat Simple_repeat 2 46 0 2726 110 10 12 chr1 169455658 169456017 -112737647 + L1PB1 LINE L1 5792 6151 0 1903 118 37 0 chr1 169456143 169456439 -112737225 + AluSx SINE Alu 1 307 -5 328 253 92 58 chr1 169456443 169456617 -112737047 - L1MC4 LINE L1 -27 8015 7836 1845 137 10 16 chr1 169456739 169457046 -112736618 - AluSq SINE Alu -8 305 1 1586 171 5 49 chr1 169457074 169457383 -112736281 + L1MB4 LINE L1 5007 5292 -886 1733 118 92 0 chr1 169457383 169457655 -112736009 - AluSx SINE Alu -9 303 7 1586 171 5 49 chr1 169457655 169457826 -112735838 + L1MB4 LINE L1 5292 5469 -709 261 0 0 0 chr1 169457832 169457861 -112735803 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 669 244 0 0 chr1 169457864 169457995 -112735669 + FRAM SINE Alu 1 131 -45 294 125 0 0 chr1 169458016 169458064 -112735600 + (GGGA)n Simple_repeat Simple_repeat 3 50 0 3246 159 69 2 chr1 169458068 169458689 -112734975 + L1MB4 LINE L1 5516 6178 -2 190 267 22 0 chr1 169458692 169458737 -112734927 + MIR SINE MIR 204 249 -13 342 263 40 0 chr1 169458754 169458830 -112734834 - L2 LINE L2 -4 3268 3190 2027 116 41 0 chr1 169458830 169459123 -112734541 + AluSx SINE Alu 1 305 -7 1754 188 0 3 chr1 169459227 169459531 -112734133 + AluJb SINE Alu 1 303 -9 595 309 33 55 chr1 169459606 169459913 -112733751 - L2 LINE L2 -470 2844 2545 1844 130 0 3 chr1 169459965 169460290 -112733374 + AluJb SINE Alu 1 324 0 306 234 87 136 chr1 169460327 169460425 -112733239 - MIR SINE MIR -2 260 159 1816 108 76 7 chr1 169460425 169460713 -112732951 + AluSp SINE Alu 1 308 -5 306 234 87 136 chr1 169460713 169460737 -112732927 - MIR SINE MIR -103 159 135 1759 116 7 14 chr1 169460737 169461045 -112732619 - AluSc SINE Alu 0 306 1 306 234 87 136 chr1 169461045 169461104 -112732560 - MIR SINE MIR -127 135 86 2198 75 0 0 chr1 169461343 169461623 -112732041 + AluY SINE Alu 1 280 -31 270 0 0 0 chr1 169461623 169461653 -112732011 + (CA)n Simple_repeat Simple_repeat 1 30 0 942 76 0 0 chr1 169462309 169462441 -112731223 - AluY SINE Alu -3 308 177 2522 47 0 0 chr1 169462441 169462741 -112730923 + AluY SINE Alu 3 302 -9 1819 187 46 67 chr1 169463059 169463536 -112730128 - MLT1C LTR MaLR 0 467 1 1930 84 11 4 chr1 169463674 169463937 -112729727 - AluSp SINE Alu -23 290 26 1599 119 0 0 chr1 169463937 169464172 -112729492 - AluJb SINE Alu -76 236 1 1479 77 0 31 chr1 169464394 169464616 -112729048 + AluY SINE Alu 88 302 -9 872 86 0 0 chr1 169464617 169464734 -112728930 - AluY SINE Alu -194 117 1 2188 80 23 3 chr1 169464865 169465166 -112728498 - AluY SINE Alu -4 307 1 1865 90 56 8 chr1 169465183 169465450 -112728214 - AluSg SINE Alu -30 280 1 741 232 68 0 chr1 169465653 169465830 -112727834 - MER5A DNA MER1_type 0 189 1 2149 91 3 0 chr1 169466228 169466524 -112727140 + AluY SINE Alu 1 297 -14 2167 102 0 3 chr1 169466529 169466832 -112726832 + AluSq SINE Alu 1 302 -11 1092 103 54 80 chr1 169466862 169466980 -112726684 - L1MB3 LINE L1 -3 6180 6069 2074 107 0 17 chr1 169466980 169467279 -112726385 - AluSx SINE Alu -18 294 1 1092 103 54 80 chr1 169467279 169467384 -112726280 - L1MB3 LINE L1 -114 6069 5963 1598 179 14 10 chr1 169467953 169468249 -112725415 + AluJb SINE Alu 1 297 -15 1272 178 0 0 chr1 169468256 169468481 -112725183 + AluJb SINE Alu 86 310 -2 2077 107 7 17 chr1 169468481 169468781 -112724883 + AluSx SINE Alu 1 297 -15 2122 90 4 0 chr1 169469047 169469324 -112724340 + AluSp SINE Alu 11 288 -25 1417 108 82 4 chr1 169469324 169469555 -112724109 + AluSq SINE Alu 59 307 -6 220 271 82 12 chr1 169469647 169469732 -112723932 + L2 LINE L2 2653 2743 -571 590 289 36 0 chr1 169469765 169469931 -112723733 + MER5B DNA MER1_type 6 177 -1 1678 100 4 0 chr1 169469995 169470235 -112723429 + AluSx SINE Alu 59 299 -13 349 360 37 6 chr1 169470252 169470413 -112723251 + L2 LINE L2 2866 3031 -241 691 151 16 161 chr1 169470439 169470493 -112723171 - MER5A DNA MER1_type -9 180 120 1524 148 18 39 chr1 169470493 169470776 -112722888 + AluJb SINE Alu 1 277 -35 2006 87 49 3 chr1 169470777 169471063 -112722601 - AluSq SINE Alu -14 299 1 2271 88 0 3 chr1 169471063 169471360 -112722304 - AluSg SINE Alu -14 296 1 691 151 16 161 chr1 169471360 169471494 -112722170 - MER5A DNA MER1_type -67 122 17 2186 101 0 0 chr1 169471510 169471806 -112721858 - AluSx SINE Alu -16 296 1 197 360 162 0 chr1 169471849 169471960 -112721704 + L2 LINE L2 3144 3272 0 377 224 77 45 chr1 169472110 169472239 -112721425 - MIR SINE MIR -42 166 45 1923 97 59 0 chr1 169473937 169474227 -112719437 + AluSg SINE Alu 1 307 -3 1310 115 34 122 chr1 169474317 169474487 -112719177 - AluSg SINE Alu -14 296 165 1641 66 0 5 chr1 169474487 169474698 -112718966 - AluY SINE Alu -16 295 86 1310 115 34 122 chr1 169474698 169474848 -112718816 - AluSg SINE Alu -145 165 4 637 81 0 35 chr1 169474848 169474934 -112718730 - AluSq/x SINE Alu -175 137 55 2138 105 0 0 chr1 169475067 169475371 -112718293 - AluSq SINE Alu -9 304 1 208 246 0 0 chr1 169475527 169475584 -112718080 + GA-rich Low_complexity Low_complexity 2 58 0 24 0 0 0 chr1 169475972 169475996 -112717668 + AT_rich Low_complexity Low_complexity 1 24 0 1509 190 13 17 chr1 169475996 169476296 -112717368 - AluJo SINE Alu -13 299 1 2330 61 3 0 chr1 169476301 169476630 -112717034 - AluY SINE Alu 0 330 1 420 20 0 0 chr1 169476630 169476679 -112716985 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 1511 142 58 15 chr1 169476680 169476954 -112716710 - AluJb SINE Alu -26 286 1 452 17 0 17 chr1 169477140 169477198 -112716466 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 1722 161 7 0 chr1 169477356 169477641 -112716023 + AluSx SINE Alu 1 287 -25 204 67 0 0 chr1 169477641 169477671 -112715993 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 269 203 141 0 chr1 169477959 169478014 -112715650 - MER21B LTR ERV1 -109 754 691 415 154 0 15 chr1 169478014 169478079 -112715585 + MER72 LTR ERV1 1 64 -658 * 1617 182 59 78 chr1 169478065 169478488 -112715176 + MER49 LTR ERV1 490 904 -19 368 235 161 27 chr1 169478494 169478643 -112715021 - MER21B LTR ERV1 -186 677 509 2277 79 0 3 chr1 169478709 169479013 -112714651 + AluY SINE Alu 1 303 -8 1490 175 3 46 chr1 169479030 169479333 -112714331 + AluJo SINE Alu 9 298 -14 877 159 49 6 chr1 169479351 169479514 -112714150 + AluJo SINE Alu 127 296 -16 1998 113 0 55 chr1 169479514 169479841 -112713823 + AluSq SINE Alu 1 309 -4 2137 98 14 0 chr1 169479841 169480126 -112713538 + AluSc SINE Alu 3 291 -18 743 201 19 169 chr1 169480136 169480515 -112713149 - MER21B LTR ERV1 -415 448 127 867 213 0 6 chr1 169480619 169480779 -112712885 - FRAM SINE Alu -4 162 4 253 286 0 0 chr1 169480782 169480837 -112712827 - MER21B LTR ERV1 -792 71 17 2503 138 76 9 chr1 169480837 169481271 -112712393 - Tigger1 DNA MER2_type -1 2417 1955 1694 129 10 20 chr1 169481380 169481674 -112711990 + AluSc SINE Alu 3 293 -16 2082 113 7 3 chr1 169481870 169482172 -112711492 + AluSx SINE Alu 1 303 -9 2067 113 0 3 chr1 169482370 169482684 -112710980 - AluSx SINE Alu 0 315 3 582 218 70 50 chr1 169482726 169482933 -112710731 - MLT1F LTR MaLR 0 590 370 1555 272 45 16 chr1 169483037 169483460 -112710204 - LTR16A LTR ERVL -15 435 1 746 242 186 13 chr1 169483463 169483694 -112709970 - LTR33 LTR ERVL -248 273 3 2400 57 0 7 chr1 169483755 169484056 -112709608 + AluY SINE Alu 1 299 -12 2253 78 0 3 chr1 169484732 169485026 -112708638 - AluSx SINE Alu -15 297 5 2427 40 3 3 chr1 169485162 169485459 -112708205 - AluY SINE Alu -14 297 1 1529 100 75 64 chr1 169485752 169486055 -112707609 - AluSx SINE Alu 0 306 1 2131 107 0 3 chr1 169486364 169486662 -112707002 - AluSp SINE Alu -16 297 1 1379 97 5 0 chr1 169486765 169486951 -112706713 - U2 snRNA snRNA -1 187 1 348 127 0 0 chr1 169487842 169487897 -112705767 + (TG)n Simple_repeat Simple_repeat 1 55 0 204 234 31 0 chr1 169488086 169488150 -112705514 + GA-rich Low_complexity Low_complexity 6 71 0 21 0 0 0 chr1 169489474 169489495 -112704169 + AT_rich Low_complexity Low_complexity 1 21 0 325 270 95 16 chr1 169490021 169490147 -112703517 + MIR3 SINE MIR 32 167 -41 2124 118 0 0 chr1 169490632 169490937 -112702727 - AluSx SINE Alu -6 306 2 2181 113 0 6 chr1 169491148 169491459 -112702205 + AluSx SINE Alu 1 309 -3 843 128 0 0 chr1 169491564 169491689 -112701975 + AluSg/x SINE Alu 172 296 -13 316 229 121 0 chr1 169491696 169491779 -112701885 + MIR SINE MIR 156 248 -14 188 332 151 21 chr1 169491799 169492005 -112701659 + L2 LINE L2 2595 2837 -477 2118 111 13 3 chr1 169492005 169492312 -112701352 - AluSx SINE Alu -2 310 1 188 332 151 21 chr1 169492312 169492343 -112701321 + L2 LINE L2 2837 2863 -451 356 234 26 0 chr1 169492462 169492539 -112701125 - L1ME3 LINE L1 -29 6133 6055 308 313 113 9 chr1 169492699 169492814 -112700850 + L2 LINE L2 3146 3272 0 28 61 0 0 chr1 169492870 169492919 -112700745 + AT_rich Low_complexity Low_complexity 1 49 0 2046 113 10 3 chr1 169493107 169493408 -112700256 - AluSq SINE Alu -10 303 1 1116 169 5 5 chr1 169493662 169493875 -112699789 + AluSp SINE Alu 5 217 -96 9422 114 102 101 chr1 169493995 169494423 -112699241 - Tigger1 DNA MER2_type -400 2018 1592 2188 123 0 0 chr1 169494423 169494733 -112698931 - AluSq SINE Alu -3 310 1 9422 114 102 101 chr1 169494733 169495075 -112698589 - Tigger1 DNA MER2_type -826 1592 1252 1849 162 0 3 chr1 169495075 169495378 -112698286 + AluJb SINE Alu 1 302 -10 9422 114 102 101 chr1 169495378 169495536 -112698128 - Tigger1 DNA MER2_type -1166 1252 1096 1945 168 0 0 chr1 169495536 169495846 -112697818 + AluSx SINE Alu 1 310 -2 9422 114 102 101 chr1 169495846 169496127 -112697537 - Tigger1 DNA MER2_type -1322 1096 817 886 201 0 7 chr1 169496127 169496281 -112697383 + FRAM SINE Alu 4 156 -10 9422 114 102 101 chr1 169496281 169497038 -112696626 - Tigger1 DNA MER2_type -1601 817 46 1329 119 0 52 chr1 169497040 169497250 -112696414 + AluSq SINE Alu 1 199 -114 325 104 0 0 chr1 169497350 169497398 -112696266 - FRAM/FAM SINE Alu -118 48 1 222 37 0 0 chr1 169497417 169497444 -112696220 + (GA)n Simple_repeat Simple_repeat 2 28 0 436 138 26 197 chr1 169497473 169497541 -112696123 + MER5A DNA MER1_type 64 93 -96 2088 130 0 7 chr1 169497541 169497849 -112695815 - AluSq SINE Alu -7 306 1 436 138 26 197 chr1 169497849 169497932 -112695732 + MER5A DNA MER1_type 93 189 0 309 294 77 28 chr1 169497955 169498098 -112695566 + MIR3 SINE MIR 48 197 -11 1986 110 27 7 chr1 169498375 169498674 -112694990 - AluSg SINE Alu 0 310 6 24 0 0 0 chr1 169499209 169499233 -112694431 + AT_rich Low_complexity Low_complexity 1 24 0 204 205 0 0 chr1 169501142 169501181 -112692483 + (CAGAGA)n Simple_repeat Simple_repeat 6 44 0 260 102 20 0 chr1 169501194 169501243 -112692421 + (TC)n Simple_repeat Simple_repeat 2 51 0 270 329 0 0 chr1 169502007 169502080 -112691584 + L2 LINE L2 3235 3307 -6 2379 90 0 0 chr1 169503927 169504238 -112689426 - AluSx SINE Alu -1 311 1 612 173 0 0 chr1 169504872 169504976 -112688688 + U13 snRNA snRNA 1 104 0 2081 108 0 36 chr1 169507088 169507395 -112686269 - AluSx SINE Alu -6 306 11 1748 144 11 0 chr1 169507398 169507682 -112685982 - AluJb SINE Alu -25 287 1 186 280 0 40 chr1 169512578 169512653 -112681011 + L3b LINE CR1 1318 1389 -194 1743 128 80 0 chr1 169512958 169513232 -112680432 + AluSg SINE Alu 1 296 -14 2013 136 0 3 chr1 169513540 169513842 -112679822 + AluSx SINE Alu 1 301 -11 2595 43 0 0 chr1 169513895 169514200 -112679464 + AluY SINE Alu 1 305 -6 2618 17 0 0 chr1 169514303 169514604 -112679060 - AluYa5 SINE Alu -10 301 1 1718 135 36 0 chr1 169515060 169515354 -112678310 - AluJb SINE Alu 0 304 1 1599 143 11 11 chr1 169515632 169515919 -112677745 + AluSx SINE Alu 10 296 -16 935 140 0 0 chr1 169516236 169516379 -112677285 + FLAM_C SINE Alu 1 143 0 2202 87 3 16 chr1 169516503 169516637 -112677027 + AluSc SINE Alu 1 135 -174 2164 93 6 3 chr1 169516637 169516949 -112676715 + AluSp SINE Alu 1 313 0 2202 87 3 16 chr1 169516949 169517125 -112676539 + AluSc SINE Alu 135 307 -2 1080 174 21 54 chr1 169517639 169517703 -112675961 + L1MB7 LINE L1 5703 5768 -416 2136 95 7 10 chr1 169517703 169518009 -112675655 - AluSq SINE Alu -8 305 1 1080 174 21 54 chr1 169518009 169518186 -112675478 + L1MB7 LINE L1 5768 5936 -248 813 135 15 0 chr1 169518187 169518320 -112675344 + AluSg/x SINE Alu 174 308 -1 185 0 40 0 chr1 169518322 169518347 -112675317 + (TA)n Simple_repeat Simple_repeat 2 27 0 657 171 14 14 chr1 169518367 169518507 -112675157 + L1MB7 LINE L1 5933 6072 -112 4392 113 22 2 chr1 169518675 169519319 -112674345 - L1PA16 LINE L1 -16 6150 5494 267 114 0 0 chr1 169519681 169519725 -112673939 + (GGA)n Simple_repeat Simple_repeat 2 45 0 1293 124 5 20 chr1 169520111 169520312 -112673352 + AluSg SINE Alu 1 198 -112 340 114 0 43 chr1 169520414 169520484 -112673180 + (TCCC)n Simple_repeat Simple_repeat 3 69 0 1801 144 7 3 chr1 169520484 169520769 -112672895 - AluSx SINE Alu -26 286 1 1789 113 78 3 chr1 169520790 169521074 -112672590 - AluSq SINE Alu -8 305 1 198 0 0 0 chr1 169521700 169521722 -112671942 + (T)n Simple_repeat Simple_repeat 1 22 0 2099 108 3 3 chr1 169523634 169523931 -112669733 - AluSc SINE Alu -12 297 1 2184 94 3 3 chr1 169523976 169524273 -112669391 - AluSp SINE Alu -16 297 1 1889 108 3 33 chr1 169525257 169525563 -112668101 - AluSx SINE Alu -15 297 1 304 105 0 0 chr1 169526004 169526077 -112667587 + Alu SINE Alu 240 303 0 2334 68 0 3 chr1 169526315 169526608 -112667056 - AluSq SINE Alu -19 294 3 2448 60 0 0 chr1 169527234 169527534 -112666130 - AluSg SINE Alu -10 300 1 824 136 0 15 chr1 169528600 169528732 -112664932 - FLAM_C SINE Alu -3 130 1 2053 64 30 0 chr1 169529096 169529362 -112664302 - AluY SINE Alu -37 274 1 1083 89 0 0 chr1 169529701 169529847 -112663817 - AluSc SINE Alu -17 292 147 265 100 0 0 chr1 169529851 169529891 -112663773 + AluSq/x SINE Alu 97 136 -166 1293 106 0 83 chr1 169529912 169529994 -112663670 - AluSq SINE Alu -113 200 113 2267 83 0 6 chr1 169529994 169530306 -112663358 - AluY SINE Alu 0 311 2 1293 106 0 83 chr1 169530306 169530441 -112663223 - AluSq SINE Alu -200 113 1 563 284 82 21 chr1 169530486 169530680 -112662984 - MIR SINE MIR -49 213 8 351 310 62 14 chr1 169530649 169530794 -112662870 + MIR3 SINE MIR 40 191 -17 * 1757 143 24 0 chr1 169530820 169531114 -112662550 + AluSx SINE Alu 1 301 -11 2117 119 0 7 chr1 169531133 169531443 -112662221 - AluSx SINE Alu -4 308 1 475 254 133 6 chr1 169531443 169531616 -112662048 - L1ME4a LINE L1 -293 5828 5634 2090 97 16 7 chr1 169531809 169532117 -112661547 - AluSq SINE Alu 0 313 3 2639 137 25 22 chr1 169532134 169532578 -112661086 + MER65A LTR ERV1 1 445 0 2174 66 13 26 chr1 169532591 169532893 -112660771 + AluY SINE Alu 1 298 -13 410 250 0 32 chr1 169533016 169533140 -112660524 + LTR7 LTR ERV1 304 423 -27 302 141 84 14 chr1 169533135 169533206 -112660458 + MER39 LTR ERV1 607 682 -25 * 21 36 0 0 chr1 169533243 169533271 -112660393 + AT_rich Low_complexity Low_complexity 1 28 0 1164 118 0 0 chr1 169533320 169533481 -112660183 + AluSg/x SINE Alu 131 291 -19 335 315 8 15 chr1 169533502 169533632 -112660032 - L1M4 LINE L1 -1522 4624 4496 1844 126 0 18 chr1 169533830 169534115 -112659549 - AluSx SINE Alu -10 302 23 2977 161 46 6 chr1 169534308 169534830 -112658834 + MER89 LTR ERV1 1 543 -16 892 131 29 0 chr1 169534830 169534967 -112658697 - AluSg/x SINE Alu -18 294 154 1698 84 4 0 chr1 169534970 169535195 -112658469 + AluSq SINE Alu 72 297 -16 2025 117 0 29 chr1 169535197 169535477 -112658187 + AluSg SINE Alu 1 273 -37 270 0 0 0 chr1 169535477 169535507 -112658157 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2025 117 0 29 chr1 169535507 169535542 -112658122 + AluSg SINE Alu 273 307 -3 21 0 0 0 chr1 169535571 169535592 -112658072 + AT_rich Low_complexity Low_complexity 1 21 0 2020 110 40 0 chr1 169535596 169535896 -112657768 + AluSx SINE Alu 1 312 0 773 144 0 0 chr1 169536228 169536346 -112657318 + FLAM_C SINE Alu 26 143 0 1199 149 33 4 chr1 169536394 169536636 -112657028 + MER33 DNA MER1_type 52 300 -24 2082 130 0 0 chr1 169536636 169536943 -112656721 - AluSx SINE Alu -1 311 5 2356 81 0 3 chr1 169538134 169538443 -112655221 - AluSg SINE Alu -2 308 1 1949 109 24 7 chr1 169538567 169538861 -112654803 + 7SLRNA srpRNA srpRNA 1 299 -21 396 0 0 0 chr1 169538862 169538906 -112654758 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 270 79 0 0 chr1 169539099 169539137 -112654527 - AluSg/x SINE Alu -166 134 97 1158 61 0 0 chr1 169539137 169539285 -112654379 + AluSg/x SINE Alu 144 291 -21 2119 102 3 0 chr1 169539663 169539958 -112653706 + AluSp SINE Alu 1 296 -17 1927 129 25 0 chr1 169540221 169540507 -112653157 - AluSx SINE Alu -19 293 1 2335 66 0 0 chr1 169540587 169540888 -112652776 - AluY SINE Alu -10 301 1 846 186 0 39 chr1 169541309 169541465 -112652199 - FAM SINE Alu -18 167 18 2146 108 7 0 chr1 169541650 169541947 -112651717 + AluSc SINE Alu 1 299 -10 687 203 0 15 chr1 169542111 169542244 -112651420 - FLAM_C SINE Alu 0 133 3 665 157 17 0 chr1 169542452 169542567 -112651097 + AluJo SINE Alu 88 204 -108 2205 80 3 7 chr1 169542605 169542904 -112650760 + AluY SINE Alu 1 298 -13 2232 71 14 3 chr1 169542987 169543284 -112650380 - AluSq SINE Alu -13 300 1 219 88 0 0 chr1 169544786 169544820 -112648844 + (CA)n Simple_repeat Simple_repeat 1 34 0 231 233 0 0 chr1 169544934 169544977 -112648687 - L2 LINE L2 -10 3262 3220 1929 149 7 0 chr1 169545068 169545377 -112648287 + AluJb SINE Alu 1 311 -1 2168 84 3 0 chr1 169545380 169545695 -112647969 + AluSq SINE Alu 1 316 0 299 323 21 13 chr1 169545702 169545805 -112647859 + MIR SINE MIR 6 106 -102 947 236 30 0 chr1 169545808 169546007 -112647657 + MER58A DNA MER1_type 1 205 -19 186 307 11 57 chr1 169546011 169546099 -112647565 + MIR SINE MIR 119 202 -60 2330 87 0 0 chr1 169546106 169546416 -112647248 + AluY SINE Alu 2 311 0 285 116 23 0 chr1 169546455 169546498 -112647166 - HY4 scRNA scRNA -48 45 2 222 227 23 0 chr1 169546506 169546550 -112647114 - L2 LINE L2 -16 3297 3253 1294 145 131 69 chr1 169546554 169546844 -112646820 - AluJo SINE Alu -4 308 1 180 0 0 0 chr1 169547064 169547084 -112646580 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2054 118 14 24 chr1 169547496 169547792 -112645872 + AluSg SINE Alu 6 298 -12 315 173 60 120 chr1 169547992 169548076 -112645588 - L1ME LINE L1 -622 5544 5469 2406 95 0 3 chr1 169548076 169548382 -112645282 + AluSg SINE Alu 1 305 -5 315 173 60 120 chr1 169548382 169548430 -112645234 - L1ME LINE L1 -697 5469 5420 257 149 15 60 chr1 169548430 169548497 -112645167 - L1ME LINE L1 -504 5617 5554 853 226 0 26 chr1 169549211 169549401 -112644263 + AluJo SINE Alu 127 311 -1 2179 116 7 0 chr1 169549558 169549859 -112643805 - AluSx SINE Alu -9 303 1 607 228 66 9 chr1 169549875 169550086 -112643578 - HAL1 LINE L1 0 2507 2285 1385 166 50 54 chr1 169550088 169550469 -112643195 + LTR47A LTR ERVL 26 446 -6 811 257 86 41 chr1 169550475 169550892 -112642772 - HAL1 LINE L1 -220 2287 1852 2061 126 3 0 chr1 169550987 169551272 -112642392 - AluSx SINE Alu -26 286 1 488 97 50 11 chr1 169551461 169551699 -112641965 + AluSq SINE Alu 1 302 -10 2335 92 13 3 chr1 169551699 169552003 -112641661 + AluSp SINE Alu 1 307 -6 2698 51 0 0 chr1 169552162 169552473 -112641191 + AluY SINE Alu 1 311 0 880 105 0 0 chr1 169552546 169552660 -112641004 + AluY SINE Alu 2 115 -196 1198 136 0 0 chr1 169552664 169552841 -112640823 - AluSp SINE Alu 0 313 137 1595 96 0 5 chr1 169552843 169553051 -112640613 + AluSg/x SINE Alu 100 306 -4 349 249 66 66 chr1 169553083 169553264 -112640400 - HAL1 LINE L1 -2325 182 2 1590 141 42 0 chr1 169553282 169553523 -112640141 - AluJo SINE Alu -61 251 1 2552 77 0 6 chr1 169553523 169553834 -112639830 - AluSq SINE Alu 0 313 5 812 157 8 15 chr1 169553837 169553991 -112639673 - FLAM_C SINE Alu 0 153 1 928 169 25 12 chr1 169554011 169554037 -112639627 + AluSg/x SINE Alu 106 130 -182 2219 133 0 0 chr1 169554037 169554338 -112639326 + AluSq SINE Alu 1 301 -12 928 169 25 12 chr1 169554338 169554471 -112639193 + AluSg/x SINE Alu 130 267 -45 2242 109 3 7 chr1 169554531 169554833 -112638831 - AluSg SINE Alu -9 301 1 2586 57 0 0 chr1 169555058 169555358 -112638306 + AluY SINE Alu 1 300 -11 1232 151 49 162 chr1 169555576 169555921 -112637743 + AluYb8 SINE Alu 1 306 -12 1751 191 0 3 chr1 169556300 169556593 -112637071 - AluJb SINE Alu -20 292 1 2225 126 0 3 chr1 169556603 169556904 -112636760 - AluSg SINE Alu -10 300 1 2328 104 3 13 chr1 169556921 169557237 -112636427 + AluSp SINE Alu 1 313 0 922 258 87 37 chr1 169557237 169557732 -112635932 - MLT1H LTR MaLR -82 513 1 207 0 0 0 chr1 169557758 169557781 -112635883 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2346 103 0 16 chr1 169558200 169558373 -112635291 - AluSx SINE Alu -5 307 140 2491 54 0 3 chr1 169558373 169558668 -112634996 - AluY SINE Alu -17 294 1 2346 103 0 16 chr1 169558668 169558806 -112634858 - AluSx SINE Alu -172 140 1 301 313 35 17 chr1 169559249 169559364 -112634300 - L2 LINE L2 0 3313 3197 2401 99 0 0 chr1 169559368 169559661 -112634003 - AluSx SINE Alu -19 293 1 378 269 82 58 chr1 169559682 169559853 -112633811 - MER5B DNA MER1_type -1 177 3 2307 94 0 7 chr1 169559967 169560308 -112633356 + AluSq SINE Alu 1 313 0 1513 162 0 0 chr1 169560561 169560789 -112632875 - AluSx SINE Alu -84 228 1 2361 73 3 0 chr1 169560823 169561112 -112632552 + AluY SINE Alu 1 290 -21 2263 102 3 0 chr1 169561490 169561785 -112631879 + AluSp SINE Alu 1 296 -17 2071 129 25 0 chr1 169562048 169562334 -112631330 - AluSx SINE Alu -19 293 1 2475 66 0 0 chr1 169562414 169562715 -112630949 - AluY SINE Alu -10 301 1 859 186 0 39 chr1 169563136 169563292 -112630372 - FAM SINE Alu -18 167 18 2293 108 7 0 chr1 169563477 169563774 -112629890 + AluSc SINE Alu 1 299 -10 702 203 0 15 chr1 169563938 169564071 -112629593 - FLAM_C SINE Alu 0 133 3 680 157 17 0 chr1 169564279 169564394 -112629270 + AluJo SINE Alu 88 204 -108 2357 90 3 6 chr1 169564432 169564743 -112628921 + AluY SINE Alu 1 310 -1 2332 74 14 3 chr1 169564814 169565110 -112628554 - AluSq SINE Alu -14 299 1 219 88 0 0 chr1 169566612 169566646 -112627018 + (CA)n Simple_repeat Simple_repeat 1 34 0 229 233 0 0 chr1 169566760 169566803 -112626861 - L2 LINE L2 -10 3262 3220 2085 149 7 0 chr1 169566894 169567203 -112626461 + AluJb SINE Alu 1 311 -1 2305 84 3 0 chr1 169567206 169567521 -112626143 + AluSq SINE Alu 1 316 0 298 323 21 13 chr1 169567528 169567631 -112626033 + MIR SINE MIR 6 106 -102 886 236 30 0 chr1 169567634 169567833 -112625831 + MER58A DNA MER1_type 1 205 -19 183 307 11 57 chr1 169567837 169567925 -112625739 + MIR SINE MIR 119 202 -60 2480 87 0 0 chr1 169567932 169568242 -112625422 + AluY SINE Alu 2 311 0 270 116 23 0 chr1 169568281 169568324 -112625340 - HY4 scRNA scRNA -48 45 2 219 227 23 0 chr1 169568332 169568376 -112625288 - L2 LINE L2 -16 3297 3253 1434 145 131 69 chr1 169568380 169568670 -112624994 - AluJo SINE Alu -4 308 1 180 0 0 0 chr1 169568890 169568910 -112624754 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2054 118 14 24 chr1 169569322 169569618 -112624046 + AluSg SINE Alu 6 298 -12 198 276 161 23 chr1 169569690 169569736 -112623928 + MIR3 SINE MIR 61 99 -109 2346 100 0 28 chr1 169569736 169570055 -112623609 - AluSp SINE Alu -3 310 1 198 276 161 23 chr1 169570055 169570095 -112623569 + MIR3 SINE MIR 99 159 -49 2028 105 39 0 chr1 169570113 169570399 -112623265 - AluSx SINE Alu -15 297 1 352 343 107 50 chr1 169570457 169570973 -112622691 - L2 LINE L2 -995 2319 1775 1837 133 72 11 chr1 169571535 169571813 -112621851 - AluSx SINE Alu -17 295 1 2104 126 7 7 chr1 169572115 169572417 -112621247 + AluSx SINE Alu 1 302 -10 282 286 66 0 chr1 169573491 169573582 -112620082 - L2 LINE L2 -1 3271 3175 1751 135 44 34 chr1 169573742 169574038 -112619626 - AluJb SINE Alu -13 299 1 2368 84 0 3 chr1 169574185 169574481 -112619183 - AluSg SINE Alu -15 295 1 182 234 109 86 chr1 169574776 169574832 -112618832 + L3b LINE CR1 1337 1390 -193 239 0 32 0 chr1 169574832 169574863 -112618801 + (CAA)n Simple_repeat Simple_repeat 2 33 0 182 234 109 86 chr1 169574863 169574934 -112618730 + L3b LINE CR1 1390 1467 -116 2376 73 0 3 chr1 169575418 169575733 -112617931 + AluSq SINE Alu 1 314 0 202 333 0 0 chr1 169577454 169577508 -112616156 + polypurine Low_complexity Low_complexity 5 58 0 869 188 32 21 chr1 169579485 169579671 -112613993 - AluJo SINE Alu -4 308 121 656 121 0 136 chr1 169579710 169579850 -112613814 - AluJo SINE Alu -178 134 14 310 274 71 62 chr1 169580321 169580434 -112613230 - L2 LINE L2 -18 3295 3182 192 77 0 0 chr1 169580447 169580473 -112613191 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1974 106 12 0 chr1 169580489 169580745 -112612919 - AluSq SINE Alu -54 259 1 202 334 274 14 chr1 169580845 169581473 -112612191 + L2 LINE L2 1715 2505 -809 2358 103 3 0 chr1 169581618 169581920 -112611744 - AluSp SINE Alu -10 303 1 2314 108 0 16 chr1 169582208 169582522 -112611142 - AluSx SINE Alu -3 309 1 2269 134 0 6 chr1 169583570 169583884 -112609780 - AluSx SINE Alu 0 312 1 1401 148 4 68 chr1 169584222 169584404 -112609260 - AluJo SINE Alu -16 296 135 2117 130 3 0 chr1 169584404 169584696 -112608968 + AluSg SINE Alu 1 293 -17 1401 148 4 68 chr1 169584696 169584777 -112608887 - AluJo SINE Alu -177 135 50 2376 104 0 0 chr1 169584815 169585112 -112608552 - AluSx SINE Alu -15 297 1 2614 63 0 0 chr1 169585123 169585426 -112608238 - AluY SINE Alu -8 303 1 185 94 31 0 chr1 169585752 169585784 -112607880 + CT-rich Low_complexity Low_complexity 1 33 0 197 320 200 10 chr1 169586095 169586195 -112607469 + MIR3 SINE MIR 46 164 -44 189 203 47 31 chr1 169586567 169586631 -112607033 - L3b LINE CR1 -228 1355 1291 2404 84 0 3 chr1 169587591 169587888 -112605776 - AluSx SINE Alu -16 296 1 309 284 11 42 chr1 169588200 169588295 -112605369 - L2 LINE L2 -10 3262 3171 2172 108 21 0 chr1 169588338 169588624 -112605040 + AluSx SINE Alu 1 292 -20 2715 43 0 0 chr1 169588730 169589032 -112604632 - AluY SINE Alu -9 302 1 2164 136 0 3 chr1 169589085 169589387 -112604277 - AluSx SINE Alu -11 301 1 1877 128 80 0 chr1 169589695 169589969 -112603695 - AluSg SINE Alu -14 296 1 190 280 0 40 chr1 169590274 169590349 -112603315 - L3b LINE CR1 -194 1389 1318 1882 144 11 0 chr1 169595245 169595529 -112598135 + AluJb SINE Alu 1 287 -25 2233 108 0 36 chr1 169595532 169595839 -112597825 + AluSx SINE Alu 11 306 -6 620 173 0 0 chr1 169597951 169598055 -112595609 - U13 snRNA snRNA 0 104 1 2535 90 0 0 chr1 169598689 169599000 -112594664 + AluSx SINE Alu 1 311 -1 1561 138 12 24 chr1 169600250 169600504 -112593160 + AluSx SINE Alu 46 296 -16 218 294 109 90 chr1 169600596 169600846 -112592818 - L2 LINE L2 -357 2957 2696 2218 102 0 59 chr1 169600846 169601168 -112592496 - AluSq SINE Alu -10 303 1 218 294 109 90 chr1 169601168 169601284 -112592380 - L2 LINE L2 -618 2696 2584 485 211 171 111 chr1 169601651 169601901 -112591763 - L1ME4a LINE L1 -2 6119 5886 1519 179 61 11 chr1 169601901 169602181 -112591483 - AluJo SINE Alu -14 298 5 485 211 171 111 chr1 169602181 169602251 -112591413 - L1ME4a LINE L1 -235 5886 5822 1897 153 0 3 chr1 169602251 169602538 -112591126 - AluJb SINE Alu -13 299 14 485 211 171 111 chr1 169602538 169602595 -112591069 - L1ME4a LINE L1 -299 5822 5718 2422 103 0 0 chr1 169603070 169603380 -112590284 + AluSg SINE Alu 1 310 0 2317 106 3 0 chr1 169604113 169604414 -112589250 + AluSx SINE Alu 1 302 -10 2323 61 0 61 chr1 169605091 169605403 -112588261 + AluY SINE Alu 1 293 -18 2475 160 84 21 chr1 169605492 169605967 -112587697 - MLT1D LTR MaLR 0 505 1 1758 152 12 61 chr1 169606388 169606716 -112586948 + AluJb SINE Alu 1 312 0 3385 52 55 0 chr1 169606809 169607230 -112586434 - MLT2A1 LTR ERVL 0 444 1 2136 116 0 7 chr1 169607383 169607677 -112585987 + AluSx SINE Alu 1 292 -20 1621 134 0 4 chr1 169607726 169607957 -112585707 - AluSx SINE Alu -82 230 1 2369 82 0 3 chr1 169608112 169608404 -112585260 + AluSc SINE Alu 1 291 -18 1845 138 50 7 chr1 169608623 169608905 -112584759 - AluSg SINE Alu -16 294 1 975 173 51 28 chr1 169609258 169609472 -112584192 + MER20 DNA MER1_type 1 219 0 382 151 302 0 chr1 169609739 169609825 -112583839 + FLAM_A SINE Alu 5 116 -17 2040 125 6 29 chr1 169610157 169610470 -112583194 - AluSx SINE Alu -6 306 1 2295 89 3 0 chr1 169610610 169610925 -112582739 + AluY SINE Alu 1 311 0 1552 132 166 0 chr1 169611063 169611328 -112582336 + AluJb SINE Alu 1 309 -3 25 0 0 0 chr1 169611347 169611372 -112582292 + AT_rich Low_complexity Low_complexity 1 25 0 2118 119 7 3 chr1 169611541 169611834 -112581830 - AluSx SINE Alu -18 294 1 317 268 89 16 chr1 169611873 169611996 -112581668 - L1ME3A LINE L1 -214 5956 5825 2102 155 0 0 chr1 169612093 169612397 -112581267 - AluSx SINE Alu -8 304 1 1200 223 107 3 chr1 169612415 169612724 -112580940 + MER58B DNA MER1_type 1 341 0 704 209 23 0 chr1 169612861 169612990 -112580674 - FLAM_A SINE Alu -1 132 1 2203 103 0 7 chr1 169613216 169613506 -112580158 - AluSq SINE Alu -17 296 9 365 233 147 35 chr1 169613599 169613715 -112579949 + L2 LINE L2 3185 3313 0 2161 117 16 3 chr1 169613825 169614133 -112579531 - AluSq SINE Alu -1 312 1 459 267 99 58 chr1 169615367 169615507 -112578157 - MIR3 SINE MIR -1 207 55 2403 92 0 0 chr1 169615507 169615810 -112577854 - AluSx SINE Alu -9 303 1 459 267 99 58 chr1 169615810 169615860 -112577804 - MIR3 SINE MIR -153 55 9 422 125 0 0 chr1 169616575 169616639 -112577025 + AluS SINE Alu 2 65 -247 35 71 0 0 chr1 169616744 169616814 -112576850 + GC_rich Low_complexity Low_complexity 1 70 0 43 56 0 0 chr1 169616939 169617010 -112576654 + GC_rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr1 169617073 169617096 -112576568 + GC_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 169617340 169617366 -112576298 + GC_rich Low_complexity Low_complexity 1 26 0 1738 150 4 4 chr1 169618891 169619164 -112574500 - AluJb SINE Alu -39 273 1 243 0 0 0 chr1 169619249 169619276 -112574388 + (A)n Simple_repeat Simple_repeat 1 27 0 1984 157 0 3 chr1 169619747 169620052 -112573612 - AluJb SINE Alu -8 304 1 235 356 112 54 chr1 169621708 169621913 -112571751 + L3b LINE CR1 1306 1522 -61 380 297 181 13 chr1 169624485 169624640 -112569024 + MIR SINE MIR 21 201 -61 204 302 87 24 chr1 169624764 169624890 -112568774 - L2 LINE L2 -26 3287 3154 2070 105 3 17 chr1 169624973 169625267 -112568397 + AluSx SINE Alu 2 291 -21 2448 86 0 3 chr1 169626757 169627059 -112566605 + AluSq SINE Alu 2 302 -11 393 324 22 30 chr1 169628486 169628636 -112565028 + MIR SINE MIR 14 162 -46 224 209 0 0 chr1 169629969 169630012 -112563652 + (CA)n Simple_repeat Simple_repeat 2 44 0 426 238 63 32 chr1 169631125 169631251 -112562413 + L2 LINE L2 2215 2344 -970 532 249 43 63 chr1 169631298 169631551 -112562113 + MLT1H LTR MaLR 51 298 -251 443 198 121 0 chr1 169631607 169631723 -112561941 + MLT1H LTR MaLR 466 595 0 253 346 39 30 chr1 169631850 169632081 -112561583 + MLT1H-int LTR MaLR 312 544 -827 250 316 20 10 chr1 169632135 169632233 -112561431 + HERV16 LTR ERVL 152 250 -4746 2017 282 90 64 chr1 169632322 169632967 -112560697 + HERV16 LTR ERVL 261 954 -4042 2224 88 3 0 chr1 169632967 169633281 -112560383 - AluSx SINE Alu 0 315 1 2017 282 90 64 chr1 169633281 169633838 -112559826 + HERV16 LTR ERVL 954 1495 -3501 1314 158 47 72 chr1 169633845 169633969 -112559695 + AluJo SINE Alu 13 139 -173 2532 43 3 13 chr1 169633969 169634268 -112559396 + AluY SINE Alu 1 296 -15 1314 158 47 72 chr1 169634268 169634422 -112559242 + AluJo SINE Alu 139 284 -28 3677 136 62 5 chr1 169634557 169635188 -112558476 + L1MB2 LINE L1 5489 6155 -16 1178 148 0 11 chr1 169635188 169635364 -112558300 - AluJb SINE Alu -18 294 121 2995 289 45 23 chr1 169635404 169636656 -112557008 + HERV16 LTR ERVL 1711 3039 -1957 468 301 83 36 chr1 169637149 169637535 -112556129 + LTR16B LTR ERVL 1 436 -14 499 282 52 84 chr1 169637548 169637824 -112555840 + L2 LINE L2 2462 2745 -527 2102 92 7 38 chr1 169637824 169638117 -112555547 - AluSp SINE Alu -29 284 1 499 282 52 84 chr1 169638117 169638227 -112555437 + L2 LINE L2 2745 2857 -415 1994 169 0 3 chr1 169638227 169638534 -112555130 + AluJb SINE Alu 2 307 -5 499 282 52 84 chr1 169638534 169638696 -112554968 + L2 LINE L2 2857 2987 -285 229 268 92 59 chr1 169639092 169639176 -112554488 - MIR SINE MIR -66 196 103 2449 90 0 10 chr1 169639176 169639488 -112554176 + AluSx SINE Alu 1 309 -3 229 268 92 59 chr1 169639488 169639556 -112554108 - MIR SINE MIR -159 103 39 1509 246 122 37 chr1 169639570 169640195 -112553469 - MER77 LTR ERV1 -19 586 54 2201 117 0 7 chr1 169640777 169641077 -112552587 - AluSg SINE Alu -12 298 1 2070 48 8 4 chr1 169641295 169641544 -112552120 + AluY SINE Alu 47 296 -15 337 252 80 60 chr1 169641638 169641789 -112551875 + MIR SINE MIR 59 212 -50 2151 142 0 0 chr1 169641816 169642127 -112551537 - AluSx SINE Alu -1 311 1 199 247 19 130 chr1 169642293 169642341 -112551323 + MIR SINE MIR 54 106 -156 2327 119 0 3 chr1 169642341 169642652 -112551012 - AluSx SINE Alu 0 312 3 2210 119 7 0 chr1 169642655 169642950 -112550714 - AluSx SINE Alu -15 297 1 199 247 19 130 chr1 169642950 169643059 -112550605 + MIR SINE MIR 108 197 -65 443 251 104 27 chr1 169643313 169643479 -112550185 - MIR SINE MIR -49 213 36 1136 100 6 65 chr1 169643521 169643691 -112549973 + AluSp SINE Alu 1 160 -153 35 71 0 0 chr1 169643792 169643862 -112549802 + GC_rich Low_complexity Low_complexity 1 70 0 34 84 0 0 chr1 169644038 169644121 -112549543 + GC_rich Low_complexity Low_complexity 1 83 0 27 49 0 0 chr1 169644360 169644401 -112549263 + GC_rich Low_complexity Low_complexity 1 41 0 234 268 49 49 chr1 169644699 169644781 -112548883 - MIR SINE MIR -86 176 95 226 376 51 8 chr1 169645126 169645243 -112548421 + MIR3 SINE MIR 35 156 -52 183 146 122 24 chr1 169645262 169645303 -112548361 + L3b LINE CR1 1512 1556 -27 419 263 45 11 chr1 169645663 169645846 -112547818 - MIR SINE MIR -46 216 31 2211 97 7 14 chr1 169646194 169646483 -112547181 + AluSx SINE Alu 1 287 -25 186 43 0 0 chr1 169647799 169647822 -112545842 + (A)n Simple_repeat Simple_repeat 1 23 0 1053 85 0 0 chr1 169647866 169647996 -112545668 + AluSg1 SINE Alu 1 130 -179 605 249 146 24 chr1 169648195 169648400 -112545264 - MIR SINE MIR -2 260 31 387 0 0 0 chr1 169648423 169648466 -112545198 + (CA)n Simple_repeat Simple_repeat 2 44 0 889 125 0 0 chr1 169649812 169649940 -112543724 + FLAM_C SINE Alu 4 131 -2 739 281 73 20 chr1 169650057 169650303 -112543361 - MIR SINE MIR -2 260 2 311 333 123 82 chr1 169650339 169650455 -112543209 + L2 LINE L2 2866 2976 -296 2196 113 7 0 chr1 169650455 169650748 -112542916 - AluSx SINE Alu -16 296 2 311 333 123 82 chr1 169650748 169650807 -112542857 + L2 LINE L2 2976 3031 -241 186 71 0 0 chr1 169650807 169650835 -112542829 + (CATA)n Simple_repeat Simple_repeat 1 28 0 311 333 123 82 chr1 169650835 169651049 -112542615 + L2 LINE L2 3031 3272 0 1753 127 52 4 chr1 169651105 169651400 -112542264 + AluJb SINE Alu 1 308 0 234 91 0 0 chr1 169652166 169652199 -112541465 + (CAATT)n Simple_repeat Simple_repeat 1 33 0 187 383 106 0 chr1 169652199 169652293 -112541371 - L2 LINE L2 -14 3258 3155 21 36 0 0 chr1 169652563 169652591 -112541073 + AT_rich Low_complexity Low_complexity 1 28 0 210 347 88 74 chr1 169653011 169653296 -112540368 + L2 LINE L2 2890 3178 -94 680 232 0 21 chr1 169653385 169653527 -112540137 - L2 LINE L2 -4 3309 3171 504 0 0 0 chr1 169653628 169653684 -112539980 + (CA)n Simple_repeat Simple_repeat 2 57 0 348 264 28 0 chr1 169653687 169653759 -112539905 - MIR SINE MIR -187 75 2 2116 117 0 32 chr1 169653866 169654196 -112539468 + AluSx SINE Alu 1 312 0 1686 149 13 68 chr1 169654205 169654513 -112539151 + AluJo SINE Alu 1 291 -21 2624 201 96 188 chr1 169654609 169655361 -112538303 - L2 LINE L2 -260 3053 2233 796 200 40 40 chr1 169655361 169655561 -112538103 + MER20 DNA MER1_type 1 200 -19 2624 201 96 188 chr1 169655561 169656135 -112537529 - L2 LINE L2 -1080 2233 1684 2230 116 3 3 chr1 169656135 169656438 -112537226 - AluSx SINE Alu -8 304 2 2624 201 96 188 chr1 169656438 169656618 -112537046 - L2 LINE L2 -1629 1684 1489 2152 117 0 32 chr1 169657026 169657335 -112536329 - AluSx SINE Alu -13 299 1 1884 152 3 3 chr1 169657460 169657750 -112535914 - AluJb SINE Alu -22 290 1 2265 99 0 7 chr1 169657759 169658087 -112535577 - AluSq SINE Alu 0 313 1 2153 106 0 3 chr1 169658094 169658406 -112535258 - AluSc SINE Alu 0 311 1 21 0 0 0 chr1 169658687 169658708 -112534956 + AT_rich Low_complexity Low_complexity 1 21 0 831 223 152 10 chr1 169658741 169658976 -112534688 + MIR SINE MIR 9 262 0 658 361 18 0 chr1 169659208 169659543 -112534121 + L1MEd LINE L1 4 344 -5775 1260 259 84 43 chr1 169659592 169660249 -112533415 + L1MEd LINE L1 524 1207 -4912 1760 160 19 49 chr1 169660407 169660714 -112532950 - AluJb SINE Alu -14 298 1 588 196 0 9 chr1 169660727 169660839 -112532825 - FLAM_C SINE Alu -2 141 31 2022 108 22 4 chr1 169660846 169661124 -112532540 - AluSx SINE Alu -14 298 16 2358 106 3 0 chr1 169661405 169661716 -112531948 - AluSx SINE Alu 0 312 1 536 253 36 72 chr1 169661744 169661965 -112531699 + L1ME3A LINE L1 5931 6143 -27 1363 237 22 28 chr1 169662010 169662365 -112531299 + MER21B LTR ERV1 19 371 -492 1402 197 69 24 chr1 169662468 169662803 -112530861 + MER21B LTR ERV1 403 752 -111 238 242 21 11 chr1 169663221 169663316 -112530348 + L1P LINE L1 5279 5374 -777 319 235 37 0 chr1 169663333 169663414 -112530250 - MIR SINE MIR -146 116 33 323 230 216 27 chr1 169663535 169663683 -112529981 + L1ME4a LINE L1 5946 6121 0 196 385 137 19 chr1 169663989 169664311 -112529353 + L2 LINE L2 2851 3210 -62 1873 136 36 13 chr1 169666076 169666377 -112527287 + AluSq SINE Alu 5 312 -1 1295 152 45 20 chr1 169666449 169666693 -112526971 + MER1B DNA MER1_type 2 251 -88 787 260 64 0 chr1 169666694 169666913 -112526751 + L2 LINE L2 1947 2179 -1135 672 241 35 0 chr1 169666917 169667091 -112526573 - MER3 DNA MER1_type 0 209 30 1081 244 82 4 chr1 169667091 169667370 -112526294 + L2 LINE L2 2177 2477 -837 2220 98 0 14 chr1 169667487 169667782 -112525882 - AluSx SINE Alu -21 291 1 599 336 163 34 chr1 169667791 169668798 -112524866 - L2 LINE L2 -609 2705 1569 5801 189 44 1 chr1 169668855 169670272 -112523392 - L1PA16 LINE L1 -692 5464 3990 956 116 0 0 chr1 169670274 169670429 -112523235 + L1PA16 LINE L1 5471 5625 -531 1353 163 24 94 chr1 169670505 169670836 -112522828 + AluJb SINE Alu 1 308 -4 2038 158 49 10 chr1 169670841 169671247 -112522417 + L1PA16 LINE L1 5612 6033 -133 27 49 0 0 chr1 169672305 169672346 -112521318 + AT_rich Low_complexity Low_complexity 1 41 0 6198 120 70 24 chr1 169672365 169672839 -112520825 - L1PA14 LINE L1 0 6161 5710 2072 139 10 0 chr1 169672839 169673134 -112520530 - AluSp SINE Alu -15 298 1 2361 81 7 10 chr1 169673143 169673450 -112520214 - AluSx SINE Alu -6 306 1 6198 120 70 24 chr1 169673450 169673657 -112520007 - L1PA14 LINE L1 -458 5703 5507 2345 85 0 3 chr1 169673657 169673952 -112519712 - AluSg SINE Alu -16 294 1 6198 120 70 24 chr1 169673952 169674123 -112519541 - L1PA14 LINE L1 -654 5507 5345 1723 105 27 19 chr1 169674123 169674381 -112519283 - AluSq SINE Alu -14 299 40 6198 120 70 24 chr1 169674381 169675556 -112518108 - L1PA14 LINE L1 -816 5345 4008 2096 99 0 0 chr1 169675556 169675829 -112517835 - AluY SINE Alu -10 301 29 6198 120 70 24 chr1 169675829 169675885 -112517779 - L1PA14 LINE L1 -2153 4008 3956 1826 116 13 63 chr1 169675888 169676191 -112517473 - AluSg SINE Alu -18 292 5 235 317 0 37 chr1 169677041 169677123 -112516541 - L2 LINE L2 -8 3264 3186 1602 191 14 0 chr1 169677261 169677562 -112516102 + AluJo SINE Alu 1 305 0 286 272 22 0 chr1 169677571 169677663 -112516001 + (TA)n Simple_repeat Simple_repeat 1 94 0 2214 100 0 0 chr1 169677667 169677973 -112515691 - AluSx SINE Alu 0 306 1 2447 70 3 0 chr1 169679094 169679393 -112514271 + AluSp SINE Alu 1 300 -13 2275 72 41 0 chr1 169680131 169680422 -112513242 - AluY SINE Alu -8 303 1 715 245 79 87 chr1 169681043 169681306 -112512358 - L2 LINE L2 -54 3259 2995 1973 116 0 0 chr1 169681306 169681573 -112512091 + AluSx SINE Alu 1 267 -45 715 245 79 87 chr1 169681573 169681849 -112511815 - L2 LINE L2 -318 2995 2747 2494 156 56 8 chr1 169681849 169681984 -112511680 - L1MB8 LINE L1 0 6178 6051 2273 83 38 0 chr1 169681984 169682273 -112511391 + AluSq SINE Alu 1 300 -13 2494 156 56 8 chr1 169682273 169682619 -112511045 - L1MB8 LINE L1 -127 6051 5674 715 245 79 87 chr1 169682619 169682674 -112510990 - L2 LINE L2 -566 2747 2693 2128 128 0 0 chr1 169683447 169683737 -112509927 + AluSg SINE Alu 1 290 -20 2134 125 0 46 chr1 169683845 169684172 -112509492 - AluSx SINE Alu 0 312 1 370 203 114 0 chr1 169684267 169684390 -112509274 - L1ME4a LINE L1 -261 5860 5724 293 180 10 40 chr1 169684418 169684454 -112509210 + (TTTA)n Simple_repeat Simple_repeat 4 40 -60 929 125 6 0 chr1 169684454 169684614 -112509050 - L1MA5 LINE L1 -4 6296 6136 293 180 10 40 chr1 169684614 169684677 -112508987 + (TTTA)n Simple_repeat Simple_repeat 40 100 0 914 28 0 0 chr1 169684678 169684785 -112508879 - L1PA5 LINE L1 -8 6146 6040 1532 20 85 0 chr1 169684785 169684986 -112508678 + L1PA5 LINE L1 5815 6032 -122 2135 122 3 16 chr1 169684986 169685297 -112508367 - AluSg1 SINE Alu -2 307 1 314 260 0 0 chr1 169685404 169685477 -112508187 + L1ME LINE L1 5518 5590 -531 2356 78 3 10 chr1 169685517 169685823 -112507841 - AluY SINE Alu -7 304 1 570 204 10 4 chr1 169685838 169685985 -112507679 + L1ME1 LINE L1 6036 6166 0 1006 195 0 6 chr1 169685994 169686168 -112507496 + AluJo SINE Alu 1 173 -139 537 215 86 18 chr1 169686186 169686349 -112507315 + MER113 DNA MER1_type? 348 521 0 812 122 61 6 chr1 169686391 169686571 -112507093 + Charlie5 DNA MER1_type 2389 2578 -34 591 243 39 87 chr1 169686583 169686633 -112507031 - MIR SINE MIR -54 208 157 1495 169 109 0 chr1 169686633 169686900 -112506764 - AluJo SINE Alu -16 296 1 591 243 39 87 chr1 169686900 169687055 -112506609 - MIR SINE MIR -105 157 13 2020 141 3 7 chr1 169687332 169687638 -112506026 + AluJb SINE Alu 1 305 -7 2289 91 0 16 chr1 169688053 169688360 -112505304 - AluY SINE Alu -8 303 2 290 392 108 0 chr1 169688453 169688583 -112505081 - L2 LINE L2 -13 3259 3116 23 0 0 0 chr1 169688669 169688692 -112504972 + AT_rich Low_complexity Low_complexity 1 23 0 2055 98 24 14 chr1 169688882 169689191 -112504473 - AluSx SINE Alu 0 312 1 1622 157 91 7 chr1 169689193 169689348 -112504316 - AluJo SINE Alu -14 298 157 242 54 0 27 chr1 169689348 169689385 -112504279 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 1622 157 91 7 chr1 169689385 169689503 -112504161 - AluJo SINE Alu -155 157 2 1860 149 47 10 chr1 169689538 169689834 -112503830 - AluJb SINE Alu -5 307 1 361 273 23 0 chr1 169689967 169690055 -112503609 - L2 LINE L2 -1 3312 3223 686 311 41 14 chr1 169690164 169690383 -112503281 - MIR SINE MIR -17 245 21 2216 115 3 10 chr1 169690569 169690882 -112502782 + AluSq SINE Alu 1 311 -2 1635 176 0 53 chr1 169690895 169691214 -112502450 + AluJo SINE Alu 1 302 -10 225 131 82 33 chr1 169691476 169691537 -112502127 + MLT1L LTR MaLR 535 598 -17 1041 256 29 8 chr1 169692039 169692285 -112501379 + MIR SINE MIR 2 252 -10 2333 83 0 13 chr1 169692616 169692916 -112500748 + AluSx SINE Alu 1 296 -16 201 74 0 0 chr1 169693330 169693357 -112500307 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 427 241 69 0 chr1 169693581 169693697 -112499967 - MER103 DNA DNA -1 165 42 27 49 0 0 chr1 169693701 169693742 -112499922 + AT_rich Low_complexity Low_complexity 1 41 0 507 231 168 6 chr1 169693966 169694183 -112499481 - L1ME3A LINE L1 -205 5957 5717 261 279 144 9 chr1 169694276 169694387 -112499277 - L2 LINE L2 -17 3296 3171 22 0 0 0 chr1 169694571 169694593 -112499071 + AT_rich Low_complexity Low_complexity 1 22 0 2165 127 0 9 chr1 169694598 169694914 -112498750 - AluSq SINE Alu 0 313 1 1993 121 11 0 chr1 169695022 169695287 -112498377 - AluSx SINE Alu -44 268 1 401 208 50 0 chr1 169695444 169695545 -112498119 - MER20 DNA MER1_type -81 138 33 1162 124 6 0 chr1 169696245 169696414 -112497250 - AluSg/x SINE Alu -3 309 140 231 167 0 0 chr1 169696445 169696481 -112497183 + Alu SINE Alu 1 36 -263 344 296 95 87 chr1 169696589 169696988 -112496676 - L2 LINE L2 -97 3175 2770 947 201 51 58 chr1 169697342 169697635 -112496029 - L1MC5 LINE L1 -562 7399 7109 1409 202 43 0 chr1 169697636 169697894 -112495770 - AluJo SINE Alu -15 297 29 2345 108 0 3 chr1 169698083 169698389 -112495275 - AluSq SINE Alu -8 305 1 2328 101 0 3 chr1 169698403 169698701 -112494963 - AluSg SINE Alu -13 297 1 185 205 0 0 chr1 169698915 169698954 -112494710 + L2 LINE L2 3265 3303 -10 1936 198 161 16 chr1 169699554 169699933 -112493731 - MLT1E1 LTR MaLR 0 654 331 2192 122 24 0 chr1 169699933 169700229 -112493435 + AluSx SINE Alu 1 303 -9 1936 198 161 16 chr1 169700229 169700420 -112493244 - MLT1E1 LTR MaLR -323 331 1 22 0 0 0 chr1 169700467 169700489 -112493175 + AT_rich Low_complexity Low_complexity 1 22 0 255 290 172 21 chr1 169700497 169700642 -112493022 - MIR SINE MIR 0 262 96 196 288 62 0 chr1 169700671 169700751 -112492913 - MIR SINE MIR -82 180 96 369 197 15 0 chr1 169700861 169700927 -112492737 - MIR3 SINE MIR -5 203 137 1812 146 43 0 chr1 169701034 169701314 -112492350 - AluJb SINE Alu -20 292 1 186 333 46 35 chr1 169701510 169701597 -112492067 + L2 LINE L2 2382 2469 -845 2239 97 26 16 chr1 169702053 169702362 -112491302 - AluSq SINE Alu -1 312 1 1346 125 26 58 chr1 169702362 169702669 -112490995 - MER21A LTR ERV1 -546 317 1 1898 144 23 3 chr1 169702680 169702986 -112490678 - AluSx SINE Alu 0 312 1 803 236 113 13 chr1 169703005 169703234 -112490430 - MIR SINE MIR -8 254 3 1625 142 44 29 chr1 169703307 169703602 -112490062 + AluJb SINE Alu 5 303 0 269 209 233 0 chr1 169703823 169703909 -112489755 + L1ME3 LINE L1 6019 6124 -38 2278 96 10 3 chr1 169703914 169704215 -112489449 - AluSx SINE Alu -9 303 1 180 305 19 67 chr1 169704602 169704707 -112488957 - L2 LINE L2 0 3313 3214 * 322 282 97 0 chr1 169704689 169704792 -112488872 + L2 LINE L2 2944 3056 -257 2582 221 41 36 chr1 169705158 169705752 -112487912 + L1MC4 LINE L1 7221 7810 -232 1571 186 90 98 chr1 169705752 169706273 -112487391 - MLT2B1 LTR ERVL -3 517 1 2256 108 0 3 chr1 169706273 169706570 -112487094 + AluSx SINE Alu 1 296 -16 2582 221 41 36 chr1 169706570 169706760 -112486904 + L1MC4 LINE L1 7809 8010 -32 798 225 107 12 chr1 169706765 169706878 -112486786 + L2 LINE L2 2444 2545 -769 180 0 0 0 chr1 169706878 169706898 -112486766 + (CCA)n Simple_repeat Simple_repeat 2 21 0 798 225 107 12 chr1 169706898 169707028 -112486636 + L2 LINE L2 2545 2710 -604 698 197 47 42 chr1 169707037 169707098 -112486566 + L1MC4 LINE L1 7635 7694 -348 1455 167 78 35 chr1 169707098 169707445 -112486219 - MLT1A1 LTR MaLR -3 362 1 698 197 47 42 chr1 169707445 169707596 -112486068 + L1MC4 LINE L1 7694 7848 -194 2179 87 38 0 chr1 169707621 169707910 -112485754 + AluSp SINE Alu 1 300 -13 632 108 0 0 chr1 169707917 169708000 -112485664 + AluS SINE Alu 2 84 -228 1839 115 0 12 chr1 169708000 169708253 -112485411 + AluSx SINE Alu 52 301 -11 2237 106 3 3 chr1 169708258 169708561 -112485103 + AluSp SINE Alu 1 303 -10 21 36 0 0 chr1 169708593 169708621 -112485043 + AT_rich Low_complexity Low_complexity 1 28 0 259 257 29 44 chr1 169708621 169708757 -112484907 + L1MC4 LINE L1 7902 8035 -7 574 181 40 132 chr1 169708788 169709091 -112484573 + L1MC4 LINE L1 7768 8042 0 23 0 0 0 chr1 169709135 169709158 -112484506 + AT_rich Low_complexity Low_complexity 1 23 0 389 304 47 18 chr1 169709180 169709351 -112484313 + L2 LINE L2 2709 2884 -430 248 328 0 0 chr1 169709739 169709800 -112483864 + MIR3 SINE MIR 117 177 -31 282 321 60 8 chr1 169711282 169711416 -112482248 - L2 LINE L2 -217 3055 2915 2365 92 0 3 chr1 169711640 169711943 -112481721 - AluSq SINE Alu 0 313 12 2061 130 7 16 chr1 169711954 169712261 -112481403 - AluSx SINE Alu -7 305 2 2477 100 0 0 chr1 169712393 169712704 -112480960 - AluSq SINE Alu -2 311 1 2409 84 3 0 chr1 169713091 169713388 -112480276 + AluSq SINE Alu 1 298 -15 226 297 16 16 chr1 169713436 169713500 -112480164 - MER5A DNA MER1_type -83 106 43 2327 81 40 3 chr1 169715860 169716157 -112477507 - AluSx SINE Alu -4 308 1 624 242 145 9 chr1 169716646 169716873 -112476791 - MIR SINE MIR -3 259 2 2249 62 15 0 chr1 169719054 169719327 -112474337 - AluY SINE Alu -14 297 21 208 348 134 9 chr1 169719339 169719451 -112474213 + L2 LINE L2 3183 3308 -5 403 232 62 36 chr1 169722086 169722198 -112471466 - L2 LINE L2 0 3313 3199 420 307 44 0 chr1 169722919 169723056 -112470608 - MIR3 SINE MIR -11 197 55 225 207 0 35 chr1 169724486 169724544 -112469120 + G-rich Low_complexity Low_complexity 2 57 0 295 301 254 14 chr1 169725106 169725315 -112468349 + MIR SINE MIR 2 260 -2 484 248 47 38 chr1 169725441 169725614 -112468050 + MIR SINE MIR 18 189 -71 321 26 0 0 chr1 169726305 169726343 -112467321 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 246 95 8 chr1 169729213 169729395 -112464269 + MIR3 SINE MIR 19 201 -7 22 35 0 0 chr1 169729612 169729641 -112464023 + AT_rich Low_complexity Low_complexity 1 29 0 2143 123 0 28 chr1 169729982 169730158 -112463506 - AluSx SINE Alu -4 308 143 2600 41 0 3 chr1 169730158 169730452 -112463212 - AluY SINE Alu -14 297 5 2143 123 0 28 chr1 169730452 169730592 -112463072 - AluSx SINE Alu -169 143 1 2681 49 0 3 chr1 169730627 169730933 -112462731 - AluY SINE Alu -6 305 1 1813 172 27 15 chr1 169731098 169731435 -112462229 - MER2 DNA MER2_type -3 341 1 723 239 157 24 chr1 169731491 169731746 -112461918 + L2 LINE L2 2050 2338 -976 216 364 63 14 chr1 169731928 169732071 -112461593 + L2 LINE L2 2905 3054 -218 2215 94 0 42 chr1 169732071 169732379 -112461285 - AluSq SINE Alu -18 295 1 1193 69 0 0 chr1 169733021 169733166 -112460498 - AluSg/x SINE Alu -2 310 166 582 179 147 118 chr1 169733189 169733468 -112460196 - L1MC4a LINE L1 -1849 5959 5673 2147 146 0 3 chr1 169733515 169733824 -112459840 + AluJb SINE Alu 1 308 -4 240 260 19 29 chr1 169734792 169734896 -112458768 + GA-rich Low_complexity Low_complexity 3 105 0 1862 161 13 7 chr1 169734913 169735217 -112458447 + AluJb SINE Alu 1 306 -6 308 321 251 29 chr1 169735405 169736323 -112457341 - L2 LINE L2 -236 3036 1901 2324 50 3 68 chr1 169740018 169740339 -112453325 - AluY SINE Alu -11 300 1 251 350 49 28 chr1 169740485 169740628 -112453036 + MIR SINE MIR 47 192 -70 346 299 62 21 chr1 169740862 169741006 -112452658 - MIR SINE MIR -2 260 111 1592 192 102 45 chr1 169741392 169741834 -112451830 + MLT1C LTR MaLR 1 467 0 1006 99 66 0 chr1 169741834 169741986 -112451678 - Tigger4(Zombi) DNA MER2_type -2 2729 2568 * 2698 146 65 16 chr1 169741982 169742048 -112451616 - Tigger4(Zombi) DNA MER2_type -2200 531 470 2299 102 23 0 chr1 169742048 169742351 -112451313 - AluSx SINE Alu -2 310 1 2698 146 65 16 chr1 169742351 169742790 -112450874 - Tigger4(Zombi) DNA MER2_type -2261 470 1 1894 178 85 89 chr1 169743244 169743312 -112450352 - MLT1D LTR MaLR 0 505 438 2490 80 0 0 chr1 169743312 169743613 -112450051 + AluSq SINE Alu 2 302 -11 1894 178 85 89 chr1 169743613 169744051 -112449613 - MLT1D LTR MaLR -67 438 1 236 330 160 0 chr1 169744345 169744445 -112449219 - L2 LINE L2 -14 3258 3143 386 250 115 58 chr1 169744647 169744803 -112448861 + MIR SINE MIR 20 184 -78 324 307 96 65 chr1 169744897 169745269 -112448395 + L2 LINE L2 1991 2381 -933 2306 95 7 3 chr1 169745269 169745574 -112448090 + AluSx SINE Alu 1 306 -6 324 307 96 65 chr1 169745574 169745647 -112448017 + L2 LINE L2 2381 2450 -864 2546 77 0 0 chr1 169745687 169746042 -112447622 - AluY SINE Alu 0 355 1 1016 118 0 0 chr1 169746042 169746177 -112447487 - AluSq/x SINE Alu -178 135 1 2203 83 0 54 chr1 169746396 169746709 -112446955 - AluSq SINE Alu -16 297 2 235 143 24 0 chr1 169747960 169748002 -112445662 - MLT1B LTR MaLR 0 390 348 456 173 49 0 chr1 169748003 169748084 -112445580 + AluSg/x SINE Alu 212 296 -13 199 330 104 9 chr1 169748637 169748752 -112444912 - L2 LINE L2 -5 3267 3142 226 243 171 0 chr1 169749083 169749153 -112444511 - L2 LINE L2 -1021 2293 2212 1135 121 19 19 chr1 169749628 169749834 -112443830 - MER2 DNA MER2_type -139 206 1 243 0 0 0 chr1 169751113 169751140 -112442524 + (T)n Simple_repeat Simple_repeat 1 27 0 203 351 46 30 chr1 169751331 169751462 -112442202 + MIR3 SINE MIR 29 161 -47 608 221 159 6 chr1 169752807 169752970 -112440694 + MER5A DNA MER1_type 2 189 0 438 150 0 30 chr1 169752986 169753086 -112440578 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 2248 105 0 3 chr1 169753087 169753381 -112440283 - AluSx SINE Alu -19 293 1 216 0 0 0 chr1 169753559 169753583 -112440081 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2401 94 0 3 chr1 169753788 169754130 -112439534 + AluSc SINE Alu 1 341 0 190 325 100 0 chr1 169754155 169754235 -112439429 - L2 LINE L2 -251 3021 2934 186 311 0 0 chr1 169754390 169754435 -112439229 - L2 LINE L2 -12 3260 3216 912 166 7 7 chr1 169754451 169754602 -112439062 - FRAM SINE Alu -18 158 8 248 323 65 48 chr1 169754662 169754786 -112438878 - MIR SINE MIR -122 140 15 264 279 106 129 chr1 169754813 169754897 -112438767 - L2 LINE L2 -528 2786 2702 198 0 0 0 chr1 169754897 169754919 -112438745 + (CCAA)n Simple_repeat Simple_repeat 3 24 0 264 279 106 129 chr1 169754919 169754951 -112438713 - L2 LINE L2 -612 2702 2671 1707 91 144 0 chr1 169754951 169755214 -112438450 + AluY SINE Alu 1 301 0 264 279 106 129 chr1 169755214 169755602 -112438062 - L2 LINE L2 -643 2671 2276 1772 155 18 4 chr1 169755602 169755880 -112437784 + AluJo SINE Alu 1 282 -30 264 279 106 129 chr1 169755880 169755921 -112437743 - L2 LINE L2 -1038 2276 2236 324 0 0 0 chr1 169755921 169755957 -112437707 + (CA)n Simple_repeat Simple_repeat 1 36 0 264 279 106 129 chr1 169755957 169756201 -112437463 - L2 LINE L2 -1078 2236 2012 396 0 0 0 chr1 169756267 169756311 -112437353 + (CA)n Simple_repeat Simple_repeat 2 45 0 1497 151 3 91 chr1 169756448 169756766 -112436898 - AluJo SINE Alu -22 290 1 351 65 0 0 chr1 169759971 169760017 -112433647 + (TCCCG)n Simple_repeat Simple_repeat 4 49 0 186 71 0 0 chr1 169761317 169761345 -112432319 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 210 224 168 65 chr1 169762132 169762239 -112431425 + MER5A DNA MER1_type 72 189 0 715 279 329 24 chr1 169763168 169763911 -112429753 - L2 LINE L2 -60 3253 2259 820 253 59 21 chr1 169764405 169764745 -112428919 - L1MC4 LINE L1 0 8042 7690 1918 203 100 24 chr1 169764749 169765218 -112428446 - MLT1D LTR MaLR 0 505 1 1440 227 124 9 chr1 169765230 169765406 -112428258 + MLT1C LTR MaLR 1 155 -312 2184 121 13 0 chr1 169765406 169765704 -112427960 + AluSq SINE Alu 1 302 -11 1440 227 124 9 chr1 169765704 169765946 -112427718 + MLT1C LTR MaLR 155 467 0 31 44 0 0 chr1 169765951 169765996 -112427668 + AT_rich Low_complexity Low_complexity 1 45 0 405 275 95 42 chr1 169766812 169767001 -112426663 + L2 LINE L2 2260 2458 -856 2824 26 3 0 chr1 169769663 169769973 -112423691 + AluY SINE Alu 1 311 0 1155 173 5 11 chr1 169770228 169770419 -112423245 - AluJo SINE Alu -17 295 106 474 357 26 41 chr1 169770449 169770914 -112422750 - L1MC/D LINE L1 -2028 5780 5323 340 311 11 68 chr1 169771040 169771217 -112422447 + L2 LINE L2 2925 3091 -181 2269 97 0 0 chr1 169771238 169771574 -112422090 - AluSq SINE Alu 0 336 1 2364 101 0 3 chr1 169771783 169772091 -112421573 + AluSx SINE Alu 1 307 -5 678 148 0 16 chr1 169775947 169776069 -112417595 + L1MB7 LINE L1 6055 6174 -10 2026 101 17 35 chr1 169776160 169776448 -112417216 + AluSx SINE Alu 1 283 -29 2067 110 30 30 chr1 169776454 169776753 -112416911 - AluSq SINE Alu -14 299 1 269 303 26 0 chr1 169778250 169778326 -112415338 - MIR SINE MIR -97 111 34 381 229 93 25 chr1 169779322 169779440 -112414224 + L2 LINE L2 3188 3313 0 201 293 0 49 chr1 169779979 169780102 -112413562 + CT-rich Low_complexity Low_complexity 3 119 0 2247 120 3 3 chr1 169781676 169781984 -112411680 + AluSx SINE Alu 1 308 -4 2185 84 0 71 chr1 169782135 169782457 -112411207 + AluSq SINE Alu 5 303 -10 2367 100 3 0 chr1 169783152 169783462 -112410202 + AluSx SINE Alu 1 311 -1 26 30 0 0 chr1 169784514 169784547 -112409117 + AT_rich Low_complexity Low_complexity 1 33 0 1313 170 96 38 chr1 169784989 169785383 -112408281 + MER96B DNA MER1_type 1 417 0 22 0 0 0 chr1 169786161 169786183 -112407481 + AT_rich Low_complexity Low_complexity 1 22 0 2412 79 3 0 chr1 169789283 169789595 -112404069 + AluSp SINE Alu 1 313 0 2079 99 59 0 chr1 169789602 169789875 -112403789 + AluSq SINE Alu 1 289 -24 2376 109 0 0 chr1 169789965 169790268 -112403396 + AluSx SINE Alu 1 303 -9 2405 106 0 0 chr1 169790277 169790588 -112403076 + AluSx SINE Alu 1 311 -1 618 264 90 32 chr1 169790904 169791154 -112402510 + MIR SINE MIR 2 261 -1 2009 111 6 77 chr1 169791486 169791810 -112401854 - AluSp SINE Alu -12 301 1 2448 98 0 0 chr1 169791870 169792177 -112401487 - AluSg SINE Alu -3 307 1 1515 68 11 0 chr1 169794296 169794487 -112399177 - AluY SINE Alu 0 311 119 2324 74 40 3 chr1 169794491 169794787 -112398877 - AluY SINE Alu -3 308 2 1145 75 0 0 chr1 169794787 169794921 -112398743 - AluY SINE Alu -177 134 1 295 254 44 70 chr1 169795152 169795266 -112398398 - MER5A DNA MER1_type -43 146 36 326 238 0 20 chr1 169795316 169795417 -112398247 - L1MC5 LINE L1 -50 7911 7813 41958 63 7 1 chr1 169795571 169801677 -112391987 - L1PA5 LINE L1 -3 6151 13 544 180 170 132 chr1 169801670 169801841 -112391823 - L1MC5 LINE L1 -110 7851 7688 * 2143 99 44 3 chr1 169801841 169802135 -112391529 - AluSg SINE Alu -4 306 1 544 180 170 132 chr1 169802135 169802269 -112391395 - L1MC5 LINE L1 -273 7688 7561 1850 141 0 48 chr1 169802269 169802463 -112391201 - AluJb SINE Alu -15 297 122 2269 125 3 0 chr1 169802463 169802774 -112390890 + AluSx SINE Alu 1 312 0 1850 141 0 48 chr1 169802774 169802891 -112390773 - AluJb SINE Alu -190 122 1 544 180 170 132 chr1 169802891 169803007 -112390657 - L1MC5 LINE L1 -400 7561 7413 438 293 57 69 chr1 169803829 169803914 -112389750 + L2 LINE L2 2183 2268 -1046 2154 108 37 0 chr1 169803914 169804211 -112389453 - AluSg SINE Alu -2 308 1 438 293 57 69 chr1 169804211 169804442 -112389222 + L2 LINE L2 2268 2495 -819 1144 72 0 0 chr1 169804450 169804588 -112389076 - AluSg/x SINE Alu -5 307 170 395 360 28 55 chr1 169804606 169804859 -112388805 + L2 LINE L2 2848 3093 -179 2149 118 14 0 chr1 169804886 169805183 -112388481 - AluSx SINE Alu -11 301 1 381 211 134 49 chr1 169806922 169807064 -112386600 - MER58B DNA MER1_type -6 335 182 231 103 0 0 chr1 169807066 169807105 -112386559 + (T)n Simple_repeat Simple_repeat 1 39 0 1007 123 0 0 chr1 169807925 169808063 -112385601 - AluSq/x SINE Alu -175 138 1 2068 142 0 0 chr1 169808123 169808425 -112385239 - AluSx SINE Alu -10 302 1 2144 107 7 13 chr1 169808425 169808724 -112384940 - AluSq SINE Alu -16 297 1 1160 124 6 0 chr1 169808755 169808924 -112384740 + AluSg/x SINE Alu 140 309 -3 1134 162 25 0 chr1 169809610 169809808 -112383856 + MER20 DNA MER1_type 17 219 0 1971 110 4 0 chr1 169811549 169811812 -112381852 + AluSx SINE Alu 37 300 -12 2107 118 0 19 chr1 169812233 169812546 -112381118 - AluSx SINE Alu -1 311 5 1633 167 11 11 chr1 169812575 169812862 -112380802 + AluJb SINE Alu 1 287 -25 1025 87 0 0 chr1 169813026 169813153 -112380511 + AluY SINE Alu 1 127 -184 449 300 14 76 chr1 169813181 169813244 -112380420 - L1MC4a LINE L1 -1884 5924 5859 2027 134 0 10 chr1 169813244 169813535 -112380129 - AluSx SINE Alu -24 288 1 449 300 14 76 chr1 169813535 169813681 -112379983 - L1MC4a LINE L1 -1949 5859 5728 437 185 0 0 chr1 169813682 169813747 -112379917 + AluS SINE Alu 2 66 -247 2365 119 0 0 chr1 169813842 169814153 -112379511 - AluSx SINE Alu -1 311 1 350 281 11 0 chr1 169814181 169814270 -112379394 - L1MC4a LINE L1 -2144 5664 5575 359 281 86 0 chr1 169814892 169815020 -112378644 + L2 LINE L2 3088 3226 -87 376 247 105 86 chr1 169815022 169815210 -112378454 - MIR3 SINE MIR -21 187 1 283 365 56 30 chr1 169815482 169815679 -112377985 + L2 LINE L2 2644 2845 -469 * 574 174 70 35 chr1 169815673 169815788 -112377876 + MIR SINE MIR 108 226 -36 1490 226 113 35 chr1 169815866 169816291 -112377373 + L2 LINE L2 2856 3313 0 374 322 64 64 chr1 169816323 169816742 -112376922 + L2 LINE L2 2256 2674 -640 971 201 0 0 chr1 169816808 169816977 -112376687 + AluJb SINE Alu 133 301 -11 2133 103 0 0 chr1 169817010 169817320 -112376344 - AluSx SINE Alu 0 310 1 1751 88 0 9 chr1 169817393 169817620 -112376044 - AluSg/x SINE Alu -12 297 73 1130 117 0 19 chr1 169817621 169817783 -112375881 - AluSg/x SINE Alu -33 277 119 605 288 61 64 chr1 169817783 169818065 -112375599 + L2 LINE L2 2525 2806 -466 2295 112 0 28 chr1 169818065 169818386 -112375278 - AluSx SINE Alu 0 312 1 605 288 61 64 chr1 169818386 169818398 -112375266 + L2 LINE L2 2806 2817 -455 863 148 7 30 chr1 169818398 169818533 -112375131 - FLAM_A SINE Alu -1 132 1 605 288 61 64 chr1 169818533 169818801 -112374863 + L2 LINE L2 2817 3082 -190 275 306 251 5 chr1 169818882 169819081 -112374583 + MIR SINE MIR 5 252 -10 2190 98 20 0 chr1 169819284 169819579 -112374085 + AluSg SINE Alu 1 301 -9 181 326 0 0 chr1 169819613 169819659 -112374005 - MIR SINE MIR -141 67 22 2387 78 3 7 chr1 169819867 169820174 -112373490 + AluSp SINE Alu 1 306 -7 2057 117 3 3 chr1 169820380 169820696 -112372968 + AluSx SINE Alu 1 316 0 494 225 91 48 chr1 169821483 169821670 -112371994 + L2 LINE L2 3118 3312 -1 2165 87 18 7 chr1 169821766 169822052 -112371612 + AluSq SINE Alu 1 289 -24 320 336 60 8 chr1 169822601 169822735 -112370929 + L2 LINE L2 3171 3311 -2 242 255 147 20 chr1 169822938 169823040 -112370624 + MIR3 SINE MIR 73 187 -21 2168 94 31 0 chr1 169823983 169824270 -112369394 + AluSx SINE Alu 1 296 -16 1709 200 0 7 chr1 169824275 169824580 -112369084 + AluJb SINE Alu 1 303 -9 423 98 0 0 chr1 169824615 169824676 -112368988 + (GGA)n Simple_repeat Simple_repeat 1 61 0 652 307 45 66 chr1 169824769 169825056 -112368608 - L3 LINE CR1 -14 1563 1283 193 233 286 48 chr1 169825353 169825407 -112368257 - MIR SINE MIR 0 262 222 2412 50 0 0 chr1 169825407 169825725 -112367939 + AluY SINE Alu 1 318 0 193 233 286 48 chr1 169825725 169825879 -112367785 - MIR SINE MIR -40 222 3 809 193 0 0 chr1 169826002 169826147 -112367517 - AluJb SINE Alu -14 298 154 2543 38 0 32 chr1 169826381 169826697 -112366967 - AluY SINE Alu -5 306 1 355 240 116 25 chr1 169826754 169826875 -112366789 - L2 LINE L2 0 3272 3141 517 328 107 20 chr1 169827210 169827454 -112366210 - L2 LINE L2 -508 2806 2542 277 302 0 35 chr1 169827675 169827791 -112365873 + L2 LINE L2 1299 1410 -1904 438 314 130 74 chr1 169828003 169828669 -112364995 + L2 LINE L2 2046 2674 -598 2211 121 3 0 chr1 169828669 169828974 -112364690 + AluSx SINE Alu 1 306 -6 438 314 130 74 chr1 169828974 169829009 -112364655 + L2 LINE L2 2674 2706 -566 1607 166 7 37 chr1 169829009 169829304 -112364360 + AluJo SINE Alu 11 296 -16 438 314 130 74 chr1 169829304 169829732 -112363932 + L2 LINE L2 2706 3223 -49 324 0 0 0 chr1 169829782 169829818 -112363846 + (CA)n Simple_repeat Simple_repeat 1 36 0 695 264 38 19 chr1 169830594 169830806 -112362858 - MIR SINE MIR -44 218 3 669 301 53 9 chr1 169830899 169831125 -112362539 + MIR SINE MIR 21 256 -6 2324 98 3 0 chr1 169832735 169833031 -112360633 + AluSx SINE Alu 1 297 -15 1036 165 16 11 chr1 169833118 169833306 -112360358 + AluJo SINE Alu 118 306 -6 354 343 220 15 chr1 169833580 169833848 -112359816 - L2 LINE L2 -2 3270 2948 279 220 20 0 chr1 169833895 169833945 -112359719 + L2 LINE L2 3209 3259 -13 2201 89 21 3 chr1 169834261 169834552 -112359112 + AluSq SINE Alu 1 296 -17 460 270 38 49 chr1 169835104 169835289 -112358375 - MIR3 SINE MIR -6 202 20 2236 90 10 0 chr1 169835495 169835783 -112357881 + AluSc SINE Alu 1 291 -18 2214 114 16 0 chr1 169836015 169836321 -112357343 - AluSx SINE Alu -1 311 1 2065 118 21 0 chr1 169836418 169836706 -112356958 + AluSx SINE Alu 1 294 -18 195 321 189 0 chr1 169836872 169836978 -112356686 - L2 LINE L2 0 3272 3147 2475 69 0 16 chr1 169837850 169838156 -112355508 + AluSc SINE Alu 1 301 -8 1065 150 0 18 chr1 169838162 169838329 -112355335 - FRAM SINE Alu -16 160 1 2122 116 3 0 chr1 169838848 169839156 -112354508 + AluSx SINE Alu 1 309 0 276 225 25 38 chr1 169840067 169840147 -112353517 + MIR SINE MIR 57 135 -127 217 281 135 0 chr1 169840131 169840220 -112353444 + L2 LINE L2 3213 3313 0 * 188 286 91 0 chr1 169840218 169840295 -112353369 + MIR SINE MIR 131 214 -48 * 194 312 180 16 chr1 169841634 169841823 -112351841 + L2 LINE L2 2434 2653 -661 287 261 163 0 chr1 169842357 169842449 -112351215 + MIR3 SINE MIR 89 195 -13 901 165 0 0 chr1 169843135 169843268 -112350396 + FLAM_A SINE Alu 1 133 0 189 0 0 0 chr1 169843713 169843734 -112349930 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2085 136 3 3 chr1 169843745 169844054 -112349610 + AluSx SINE Alu 1 309 -3 267 232 196 0 chr1 169844110 169844222 -112349442 + L1ME3A LINE L1 5816 5949 -221 2163 116 0 0 chr1 169844249 169844567 -112349097 + AluSx SINE Alu 1 318 0 2591 56 0 0 chr1 169846522 169846828 -112346836 + AluY SINE Alu 1 306 -5 465 339 75 66 chr1 169846835 169847260 -112346404 + L2 LINE L2 2814 3242 -30 2142 108 0 17 chr1 169847831 169848162 -112345502 + AluSx SINE Alu 1 326 0 180 77 0 0 chr1 169848406 169848432 -112345232 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1096 138 0 0 chr1 169848434 169848593 -112345071 - AluSg/x SINE Alu -30 282 124 214 352 66 0 chr1 169848770 169848861 -112344803 + L2 LINE L2 3145 3241 -31 2137 73 0 0 chr1 169849730 169849989 -112343675 + AluY SINE Alu 1 259 -52 316 283 145 36 chr1 169850768 169850906 -112342758 - MIR3 SINE MIR -46 162 10 228 35 0 0 chr1 169853497 169853526 -112340138 + (CA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr1 169854031 169854061 -112339603 + GC_rich Low_complexity Low_complexity 1 30 0 246 328 50 34 chr1 169854920 169855039 -112338625 - L2 LINE L2 -14 3299 3179 231 139 93 0 chr1 169855121 169855164 -112338500 + L2 LINE L2 3267 3313 0 300 240 91 50 chr1 169856408 169856529 -112337135 + MIR3 SINE MIR 3 128 -80 223 226 69 118 chr1 169857078 169857180 -112336484 + MER5B DNA MER1_type 37 133 -45 2416 73 3 0 chr1 169857196 169857496 -112336168 + AluY SINE Alu 1 301 -10 1773 157 10 10 chr1 169857518 169857817 -112335847 + AluJo SINE Alu 1 299 -13 1454 209 172 20 chr1 169857828 169858334 -112335330 + L1ME2 LINE L1 5582 6164 0 240 380 0 0 chr1 169858444 169858515 -112335149 + L2 LINE L2 3192 3262 -10 189 0 0 0 chr1 169858516 169858537 -112335127 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 2134 89 46 0 chr1 169858696 169858978 -112334686 - AluSx SINE Alu -4 308 14 267 146 0 0 chr1 169858978 169859019 -112334645 - Alu SINE Alu -259 41 1 663 239 66 58 chr1 169859065 169859626 -112334038 + MLT1L LTR MaLR 3 608 -7 696 190 43 147 chr1 169859769 169859852 -112333812 + MER63A DNA MER1_type 1 91 -1597 2362 97 10 0 chr1 169859852 169860161 -112333503 - AluSq SINE Alu -1 312 1 696 190 43 147 chr1 169860161 169860309 -112333355 + MER63A DNA MER1_type 91 208 -2 1881 114 37 4 chr1 169862767 169863068 -112330596 - AluSx SINE Alu 0 310 1 207 0 0 0 chr1 169863079 169863102 -112330562 + (TA)n Simple_repeat Simple_repeat 1 23 0 262 339 77 36 chr1 169864992 169865328 -112328336 + L2 LINE L2 2468 2817 -497 2152 102 0 7 chr1 169865495 169865779 -112327885 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr1 169865782 169865805 -112327859 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2345 96 0 7 chr1 169865845 169866148 -112327516 + AluSq SINE Alu 1 301 -12 1791 125 35 38 chr1 169866443 169866732 -112326932 - AluSx SINE Alu -24 288 1 358 359 53 23 chr1 169866961 169867092 -112326572 - L2 LINE L2 -4 3268 3134 2273 105 7 0 chr1 169867168 169867463 -112326201 - AluSp SINE Alu -16 297 1 2393 65 3 26 chr1 169869245 169869551 -112324113 + AluSq SINE Alu 2 300 -13 263 218 154 26 chr1 169869914 169869992 -112323672 - L2 LINE L2 -19 3294 3207 500 286 55 11 chr1 169870123 169870319 -112323345 + MIR SINE MIR 3 204 -58 261 120 27 13 chr1 169870677 169870752 -112322912 + (TA)n Simple_repeat Simple_repeat 2 77 0 285 316 155 6 chr1 169870753 169870921 -112322743 - L2 LINE L2 -412 2902 2710 194 280 11 32 chr1 169870916 169871009 -112322655 - L2 LINE L2 -92 3221 3131 * 319 300 247 0 chr1 169871730 169871920 -112321744 + MIR SINE MIR 20 256 -6 573 277 47 0 chr1 169873243 169873391 -112320273 + MIR SINE MIR 103 257 -5 83 55 0 0 chr1 169874108 169874235 -112319429 + AT_rich Low_complexity Low_complexity 1 127 0 222 144 45 18 chr1 169874238 169874349 -112319315 + (TTATA)n Simple_repeat Simple_repeat 5 118 0 108 47 0 16 chr1 169874349 169874539 -112319125 + AT_rich Low_complexity Low_complexity 1 187 0 1145 92 13 0 chr1 169874542 169874694 -112318970 + AluSg/x SINE Alu 152 305 -5 429 287 73 6 chr1 169874794 169874958 -112318706 - L1MC/D LINE L1 -2025 5783 5609 831 335 100 18 chr1 169874995 169875544 -112318120 + L2 LINE L2 445 1038 -2276 1064 296 107 21 chr1 169875593 169876151 -112317513 + L2 LINE L2 2288 2797 -516 2079 118 3 7 chr1 169876151 169876447 -112317217 - AluSx SINE Alu -17 295 1 1064 296 107 21 chr1 169876447 169876741 -112316923 + L2 LINE L2 2797 3308 -5 23 0 0 0 chr1 169877502 169877525 -112316139 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 169878383 169878404 -112315260 + AT_rich Low_complexity Low_complexity 1 21 0 2520 48 0 19 chr1 169878636 169878949 -112314715 + AluY SINE Alu 2 308 -3 281 263 127 51 chr1 169880498 169880616 -112313048 - L2 LINE L2 -1 3271 3145 2104 113 7 23 chr1 169882121 169882431 -112311233 + AluSx SINE Alu 1 305 -7 4683 130 19 19 chr1 169882701 169883004 -112310660 + L1MA6 LINE L1 5487 5789 -511 1964 162 3 10 chr1 169883004 169883318 -112310346 + AluJb SINE Alu 1 312 0 273 29 0 0 chr1 169883324 169883358 -112310306 + (TA)n Simple_repeat Simple_repeat 2 35 0 4683 130 19 19 chr1 169883358 169883856 -112309808 + L1MA6 LINE L1 5793 6295 -5 207 0 0 0 chr1 169884530 169884553 -112309111 + (CAAAG)n Simple_repeat Simple_repeat 2 24 0 573 277 47 0 chr1 169885423 169885571 -112308093 - MIR SINE MIR -5 257 103 319 300 247 0 chr1 169886894 169887084 -112306580 - MIR SINE MIR -6 256 20 194 280 11 32 chr1 169887805 169887898 -112305766 + L2 LINE L2 3131 3221 -92 * 285 316 155 6 chr1 169887893 169888061 -112305603 + L2 LINE L2 2710 2902 -412 261 120 27 13 chr1 169888062 169888137 -112305527 + (TA)n Simple_repeat Simple_repeat 2 77 0 500 286 55 11 chr1 169888495 169888691 -112304973 - MIR SINE MIR -58 204 3 263 218 154 26 chr1 169888822 169888900 -112304764 + L2 LINE L2 3207 3294 -19 2393 65 3 26 chr1 169889263 169889569 -112304095 - AluSq SINE Alu -13 300 2 2273 105 7 0 chr1 169891351 169891646 -112302018 + AluSp SINE Alu 1 297 -16 358 359 53 23 chr1 169891722 169891853 -112301811 + L2 LINE L2 3134 3268 -4 1791 125 35 38 chr1 169892084 169892373 -112301291 + AluSx SINE Alu 1 288 -24 2345 96 0 7 chr1 169892668 169892971 -112300693 - AluSq SINE Alu -12 301 1 207 0 0 0 chr1 169893011 169893034 -112300630 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2152 102 0 7 chr1 169893037 169893321 -112300343 - AluSx SINE Alu -30 282 1 262 339 77 36 chr1 169893488 169893824 -112299840 - L2 LINE L2 -497 2817 2468 1748 188 73 87 chr1 169895684 169895714 -112297950 + L1MC5 LINE L1 6931 6960 -1001 207 0 0 0 chr1 169895714 169895737 -112297927 + (TA)n Simple_repeat Simple_repeat 1 23 0 1748 188 73 87 chr1 169895737 169895749 -112297915 + L1MC5 LINE L1 6960 6971 -990 2254 71 0 14 chr1 169895749 169896032 -112297632 + AluY SINE Alu 1 279 -32 1748 188 73 87 chr1 169896032 169896715 -112296949 + L1MC5 LINE L1 6971 7647 -314 747 130 9 0 chr1 169896738 169896853 -112296811 + AluSg/x SINE Alu 192 307 -2 783 219 26 34 chr1 169896853 169897122 -112296542 + L1MC5 LINE L1 7644 7910 -51 450 102 0 0 chr1 169897123 169897182 -112296482 + Alu SINE Alu 6 64 -246 1443 100 13 17 chr1 169897182 169897412 -112296252 + L1MD1 LINE L1 5603 5831 -411 2127 117 0 26 chr1 169897488 169897796 -112295868 + AluSx SINE Alu 6 305 -7 1985 148 37 27 chr1 169897809 169898213 -112295451 + L1MD1 LINE L1 5835 6242 0 2378 75 20 0 chr1 169899134 169899428 -112294236 - AluSx SINE Alu -11 301 2 26 50 0 0 chr1 169899832 169899872 -112293792 + AT_rich Low_complexity Low_complexity 1 40 0 2230 125 0 3 chr1 169900004 169900307 -112293357 - AluSx SINE Alu -10 302 1 21 36 0 0 chr1 169900802 169900830 -112292834 + AT_rich Low_complexity Low_complexity 1 28 0 2289 67 0 67 chr1 169900974 169901303 -112292361 - AluSc SINE Alu -2 307 1 383 233 126 10 chr1 169901482 169901585 -112292079 - L2 LINE L2 -1 3312 3198 524 333 41 22 chr1 169901723 169901993 -112291671 - L2 LINE L2 -348 2966 2692 2637 33 0 3 chr1 169902058 169902360 -112291304 + AluY SINE Alu 1 301 -10 298 0 0 0 chr1 169905977 169906020 -112287644 + AluY SINE Alu 266 308 0 1643 162 46 11 chr1 169906503 169906787 -112286877 + AluJb SINE Alu 1 294 -18 1712 194 26 0 chr1 169907209 169907513 -112286151 + AluJo SINE Alu 1 312 0 215 81 54 0 chr1 169907516 169907553 -112286111 + GA-rich Low_complexity Low_complexity 3 41 0 507 241 66 30 chr1 169907579 169907745 -112285919 + MIR SINE MIR 91 262 0 1981 136 14 0 chr1 169908413 169908708 -112284956 - AluSx SINE Alu -13 299 1 696 186 8 8 chr1 169908864 169908993 -112284671 + AluSq/x SINE Alu 1 129 -184 2287 90 3 7 chr1 169909098 169909399 -112284265 + AluSq SINE Alu 13 312 -1 741 233 103 33 chr1 169909618 169909918 -112283746 + L1ME3A LINE L1 5325 5645 -519 1579 224 49 23 chr1 169909965 169910397 -112283267 - LTR47B LTR ERVL 0 443 1 535 293 21 37 chr1 169910546 169910848 -112282816 + L1ME3A LINE L1 5643 5947 -223 955 214 133 19 chr1 169910911 169911182 -112282482 + AluJo SINE Alu 1 302 0 1910 128 62 19 chr1 169911527 169911895 -112281769 - MLT1B LTR MaLR -6 384 1 27 0 0 0 chr1 169912270 169912297 -112281367 + AT_rich Low_complexity Low_complexity 1 27 0 338 106 0 0 chr1 169912313 169912360 -112281304 - MER66A LTR ERV1 -145 333 287 2303 82 3 3 chr1 169912443 169912736 -112280928 + AluSp SINE Alu 11 303 -10 2117 110 0 38 chr1 169912746 169913065 -112280599 + AluSg SINE Alu 1 307 -3 22 70 0 0 chr1 169913174 169913217 -112280447 + AT_rich Low_complexity Low_complexity 1 43 0 182 36 0 36 chr1 169913540 169913568 -112280096 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1488 153 4 35 chr1 169913612 169913873 -112279791 - AluJb SINE Alu -46 266 14 273 172 11 33 chr1 169913884 169913945 -112279719 - MER5A DNA MER1_type -124 65 4 801 147 49 0 chr1 169914720 169914883 -112278781 - L1MD3 LINE L1 -10 7985 7815 2241 167 55 20 chr1 169914884 169915392 -112278272 - L1MC4a LINE L1 -325 7483 6958 735 210 116 0 chr1 169915422 169915603 -112278061 + MIR SINE MIR 3 204 -58 4902 78 20 0 chr1 169916058 169916722 -112276942 - L1PA14 LINE L1 -1 6160 5484 2474 66 0 3 chr1 169916773 169917076 -112276588 + AluY SINE Alu 1 302 -9 2309 114 0 0 chr1 169917283 169917591 -112276073 - AluSq SINE Alu -5 308 1 7202 140 21 33 chr1 169918273 169918421 -112275243 - L1P4 LINE L1 -677 5484 5336 2262 111 3 9 chr1 169918421 169918736 -112274928 + AluSp SINE Alu 1 313 0 7202 140 21 33 chr1 169918736 169920144 -112273520 - L1P4 LINE L1 -825 5336 3942 449 247 167 0 chr1 169920371 169920521 -112273143 - MIR SINE MIR 0 262 88 2450 95 0 0 chr1 169920869 169921174 -112272490 - AluSq SINE Alu -8 305 1 207 100 0 0 chr1 169921175 169921205 -112272459 + (T)n Simple_repeat Simple_repeat 1 30 0 201 286 155 0 chr1 169921715 169921799 -112271865 - MIR SINE MIR -30 232 136 24 53 0 0 chr1 169921802 169921840 -112271824 + AT_rich Low_complexity Low_complexity 1 38 0 1348 190 77 11 chr1 169921918 169922192 -112271472 - AluJb SINE Alu -20 292 1 1295 140 251 0 chr1 169922248 169922491 -112271173 + AluJb SINE Alu 1 304 -8 249 309 114 24 chr1 169922502 169922625 -112271039 - MIR SINE MIR -128 134 1 189 414 35 9 chr1 169922863 169922979 -112270685 + MIR3 SINE MIR 4 122 -86 2023 109 3 18 chr1 169922989 169923274 -112270390 + AluSx SINE Alu 5 285 -27 1197 143 174 42 chr1 169923430 169923689 -112269975 - AluJo SINE Alu -9 293 1 2255 95 0 14 chr1 169924157 169924451 -112269213 - AluSc SINE Alu -19 290 1 972 298 128 33 chr1 169924550 169925038 -112268626 - L2 LINE L2 -1 3312 2872 2173 123 0 0 chr1 169925038 169925330 -112268334 - AluSx SINE Alu -16 296 5 972 298 128 33 chr1 169925330 169925374 -112268290 - L2 LINE L2 -441 2872 2834 2239 92 0 16 chr1 169925374 169925677 -112267987 + AluSc SINE Alu 1 298 -11 972 298 128 33 chr1 169925677 169925900 -112267764 - L2 LINE L2 -479 2834 2493 433 139 14 0 chr1 169926645 169926717 -112266947 + tRNA-Ala-GCG tRNA tRNA 1 73 -2 2142 137 0 7 chr1 169926728 169927028 -112266636 + AluSx SINE Alu 1 298 -14 953 152 0 13 chr1 169927411 169927601 -112266063 - AluSg/x SINE Alu 0 323 136 2230 119 0 0 chr1 169927628 169927923 -112265741 + AluSx SINE Alu 11 305 -7 1640 170 31 28 chr1 169927987 169928298 -112265366 - AluJo SINE Alu 0 312 1 1012 302 76 37 chr1 169928428 169928888 -112264776 - L3 LINE CR1 -2 1575 1098 580 240 26 47 chr1 169928890 169929082 -112264582 - MER5A DNA MER1_type -1 188 1 2017 106 0 4 chr1 169929653 169929927 -112263737 + AluSx SINE Alu 1 273 -39 603 102 0 0 chr1 169929930 169930018 -112263646 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 423 155 0 0 chr1 169930021 169930092 -112263572 + Alu SINE Alu 236 306 -4 1234 299 75 77 chr1 169930096 169930489 -112263175 + L1ME4a LINE L1 2890 3282 -2864 2183 110 0 3 chr1 169930489 169930790 -112262874 + AluSx SINE Alu 1 300 -12 1234 299 75 77 chr1 169930790 169931002 -112262662 + L1ME4a LINE L1 3282 3493 -2653 381 153 35 0 chr1 169931002 169931087 -112262577 + L1MB2 LINE L1 6084 6171 0 1234 299 75 77 chr1 169931087 169931113 -112262551 + L1ME4a LINE L1 3493 3518 -2628 2144 136 0 0 chr1 169931113 169931421 -112262243 + AluSx SINE Alu 1 308 -4 1234 299 75 77 chr1 169931421 169931693 -112261971 + L1ME4a LINE L1 3518 3793 -2353 426 240 58 16 chr1 169931697 169931818 -112261846 + L2 LINE L2 3187 3312 -1 490 258 91 27 chr1 169931884 169932182 -112261482 + L1ME4a LINE L1 3881 4197 -1949 372 270 105 67 chr1 169932282 169932450 -112261214 + L1ME4a LINE L1 4317 4502 -1644 2315 76 7 0 chr1 169932450 169932740 -112260924 + AluY SINE Alu 1 292 -19 372 270 105 67 chr1 169932740 169932856 -112260808 + L1ME4a LINE L1 4502 4612 -1534 261 310 42 17 chr1 169933007 169933294 -112260370 + L1ME4a LINE L1 4741 5034 -1112 21 0 0 0 chr1 169933303 169933324 -112260340 + AT_rich Low_complexity Low_complexity 1 21 0 2106 154 0 0 chr1 169933440 169933751 -112259913 + AluSx SINE Alu 1 311 -1 1682 143 45 11 chr1 169933968 169934255 -112259409 + AluJo SINE Alu 1 297 -15 26 0 0 0 chr1 169934299 169934325 -112259339 + AT_rich Low_complexity Low_complexity 1 26 0 1379 131 0 0 chr1 169934339 169934537 -112259127 + AluSg/x SINE Alu 103 300 -12 302 226 234 0 chr1 169934694 169934818 -112258846 - HAL1 LINE L1 -2345 162 10 2091 128 10 0 chr1 169935571 169935868 -112257796 + AluSx SINE Alu 1 300 -12 1813 149 10 3 chr1 169935879 169936175 -112257489 + AluJb SINE Alu 3 300 -12 381 305 137 15 chr1 169936281 169936478 -112257186 + MIR SINE MIR 14 234 -28 244 53 26 0 chr1 169936864 169936902 -112256762 - Charlie1 DNA MER1_type -738 2023 1985 2260 108 0 3 chr1 169936976 169937273 -112256391 - AluSq SINE Alu -17 296 1 398 237 52 21 chr1 169937983 169938080 -112255584 + MIR SINE MIR 25 124 -138 2271 95 7 0 chr1 169938114 169938399 -112255265 + AluSc SINE Alu 1 287 -22 609 263 98 29 chr1 169938886 169939160 -112254504 + L1ME4a LINE L1 5534 5826 -295 264 245 0 53 chr1 169939161 169939255 -112254409 - MER102b DNA MER1_type -2 339 251 1539 184 16 44 chr1 169939402 169939793 -112253871 - AluJo SINE Alu 0 382 1 2503 78 0 3 chr1 169939804 169940112 -112253552 - AluSq SINE Alu -6 307 1 1133 207 61 4 chr1 169940256 169940502 -112253162 - MIR SINE MIR 0 262 3 25 51 0 0 chr1 169940570 169940609 -112253055 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr1 169941042 169941064 -112252600 + AT_rich Low_complexity Low_complexity 1 22 0 1074 116 13 13 chr1 169941066 169941221 -112252443 + AluSq SINE Alu 1 155 -158 519 315 58 94 chr1 169941376 169942001 -112251663 - L2 LINE L2 -1419 1895 1294 259 279 13 13 chr1 169942373 169942452 -112251212 + MIR SINE MIR 68 146 -116 1194 104 20 30 chr1 169943103 169943304 -112250360 + L1MB3 LINE L1 5741 5939 -244 1198 98 0 0 chr1 169943305 169943458 -112250206 + AluSp SINE Alu 136 288 -25 1230 160 4 48 chr1 169943463 169943731 -112249933 + L1MB3 LINE L1 5928 6183 0 2075 138 0 3 chr1 169944540 169944837 -112248827 - AluSx SINE Alu -16 296 1 186 333 93 28 chr1 169944862 169944970 -112248694 + L2 LINE L2 3116 3230 -42 255 203 0 0 chr1 169944999 169945058 -112248606 + (CAATA)n Simple_repeat Simple_repeat 3 61 0 22 35 0 0 chr1 169945194 169945223 -112248441 + AT_rich Low_complexity Low_complexity 1 29 0 367 316 84 56 chr1 169945223 169945646 -112248018 - MLT1K LTR MaLR -16 572 142 1029 222 17 17 chr1 169945798 169946037 -112247627 + MLT1J LTR MaLR 13 251 -260 229 260 88 116 chr1 169946280 169946530 -112247134 + MLT1K LTR MaLR 96 338 -250 351 0 0 0 chr1 169946669 169946708 -112246956 + (TG)n Simple_repeat Simple_repeat 2 40 0 2258 99 24 0 chr1 169946708 169947001 -112246663 - AluSp SINE Alu -13 300 1 2454 96 0 0 chr1 169947063 169947375 -112246289 - AluSx SINE Alu 0 312 1 4665 149 23 7 chr1 169948216 169949029 -112244635 - L1MA7 LINE L1 -5 6286 5461 240 262 16 0 chr1 169949527 169949588 -112244076 - MER5A DNA MER1_type -118 71 10 2473 87 7 0 chr1 169949714 169950023 -112243641 - AluSx SINE Alu -1 311 1 458 195 13 0 chr1 169951504 169951581 -112242083 - Zaphod DNA AcHobo -1 4030 3953 2353 105 0 3 chr1 169951581 169951885 -112241779 - AluSx SINE Alu -9 303 1 1743 177 32 0 chr1 169952001 169952284 -112241380 - AluJo SINE Alu -20 292 1 24 32 0 0 chr1 169952415 169952446 -112241218 + AT_rich Low_complexity Low_complexity 1 31 0 1583 82 25 210 chr1 169952875 169953242 -112240422 + AluSx SINE Alu 1 299 -13 222 91 0 0 chr1 169954322 169954355 -112239309 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 740 201 7 7 chr1 169958413 169958562 -112235102 - MIR SINE MIR -6 256 108 1453 223 30 3 chr1 169959070 169959375 -112234289 - L1PA15-16 LINE L1 -6425 424 112 3723 174 33 10 chr1 169959408 169960096 -112233568 + MER39 LTR ERV1 1 704 -3 243 274 36 0 chr1 169961175 169961259 -112232405 - MIR SINE MIR -71 191 105 2536 53 0 7 chr1 169961267 169961567 -112232097 - AluY SINE Alu -13 298 1 503 268 0 25 chr1 169961861 169962018 -112231646 - MIR SINE MIR -1 261 109 10172 35 1 2 chr1 169963469 169964682 -112228982 + L1P LINE L1 3287 4498 -1648 469 167 0 0 chr1 169967146 169967218 -112226446 + tRNA-Gly-GGG tRNA tRNA 3 74 0 1138 86 0 0 chr1 169967412 169967551 -112226113 + AluSx SINE Alu 22 160 -152 302 175 0 0 chr1 169968324 169968381 -112225283 - AluSx SINE Alu -6 296 240 364 278 28 28 chr1 169968428 169968572 -112225092 + Charlie4 DNA MER1_type 1815 1958 -3 991 194 0 0 chr1 169968973 169969138 -112224526 + U1 snRNA snRNA 1 165 0 231 239 15 112 chr1 169969256 169969390 -112224274 + AluSq/x SINE Alu 2 122 -181 1599 108 4 87 chr1 169969487 169969764 -112223900 - AluSx SINE Alu -58 254 1 375 152 11 120 chr1 169969824 169969916 -112223748 - MER30 DNA MER1_type -148 82 1 238 327 200 13 chr1 169970161 169970311 -112223353 - MLT2F LTR ERVL -460 203 26 284 175 16 0 chr1 169970452 169970515 -112223149 + CT-rich Low_complexity Low_complexity 3 66 0 718 193 151 90 chr1 169970520 169970898 -112222766 - ERVL-F LTR ERVL -42 5722 5322 204 214 0 0 chr1 169971182 169971224 -112222440 - L2 LINE L2 -5 3308 3267 572 104 0 0 chr1 169971746 169971823 -112221841 + tRNA-Asn-AAC tRNA tRNA 1 77 0 238 306 92 0 chr1 169972138 169972236 -112221428 + MIR SINE MIR 34 140 -122 2413 93 3 0 chr1 169972242 169972554 -112221110 + AluSq SINE Alu 1 313 0 1097 216 58 52 chr1 169972565 169972930 -112220734 - HAL1 LINE L1 -599 1908 1542 1538 109 0 23 chr1 169972930 169973150 -112220514 - AluSx SINE Alu -19 293 79 1530 269 13 36 chr1 169973154 169973603 -112220061 + LTR2 LTR ERV1 11 449 0 529 155 0 0 chr1 169973603 169973687 -112219977 - AluSx SINE Alu -228 85 2 550 235 124 5 chr1 169973719 169973930 -112219734 + MER90 LTR ERV1 1 268 -346 2117 118 3 20 chr1 169973955 169974259 -112219405 - AluSg SINE Alu -11 299 1 1093 142 34 0 chr1 169974261 169974437 -112219227 - AluSg/x SINE Alu -7 303 122 315 268 10 10 chr1 169974437 169974534 -112219130 + MER90 LTR ERV1 290 386 -228 * 364 245 28 38 chr1 169974529 169974635 -112219029 + MER90 LTR ERV1 505 609 -5 582 241 175 80 chr1 169974911 169974961 -112218703 - MLT1H LTR MaLR -16 533 489 2323 80 3 7 chr1 169974961 169975260 -112218404 + AluY SINE Alu 1 298 -13 582 241 175 80 chr1 169975260 169975632 -112218032 - MLT1H LTR MaLR -60 489 71 2385 64 0 0 chr1 169975696 169976010 -112217654 - AluY SINE Alu 0 314 1 2202 85 3 0 chr1 169976032 169976327 -112217337 - AluSc SINE Alu -13 296 1 2118 103 11 0 chr1 169976338 169976717 -112216947 - AluSq SINE Alu 0 382 1 245 212 0 15 chr1 169978910 169978976 -112214688 + (TA)n Simple_repeat Simple_repeat 1 65 0 784 218 0 123 chr1 169979009 169979229 -112214435 - MER77 LTR ERV1 -412 193 1 402 115 0 0 chr1 169979474 169979535 -112214129 + MER41A LTR ERV1 406 466 -88 22 0 0 0 chr1 169980673 169980695 -112212969 + AT_rich Low_complexity Low_complexity 1 22 0 2832 30 3 0 chr1 169985343 169985674 -112207990 - L1PA3 LINE L1 -481 5674 5343 4561 18 0 0 chr1 169985674 169986184 -112207480 + L1PA3 LINE L1 5642 6155 0 21 0 0 0 chr1 169986235 169986256 -112207408 + AT_rich Low_complexity Low_complexity 1 21 0 456 312 81 17 chr1 169986424 169986658 -112207006 - MLT1L LTR MaLR -7 608 360 192 40 0 0 chr1 169986743 169986768 -112206896 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3213 120 113 40 chr1 169987136 169987728 -112205936 + MER4D LTR ERV1 1 635 -268 1078 180 24 111 chr1 169987780 169988069 -112205595 + AluSx SINE Alu 5 268 -44 907 167 0 0 chr1 169988070 169988214 -112205450 + MLT1A1 LTR MaLR 222 365 0 442 280 11 70 chr1 169988242 169988302 -112205362 - LTR33 LTR ERVL -3 518 456 2444 78 0 0 chr1 169988302 169988598 -112205066 - AluY SINE Alu -15 296 1 442 280 11 70 chr1 169988598 169988723 -112204941 - LTR33 LTR ERVL -65 456 344 1387 229 13 68 chr1 169988727 169989124 -112204540 - MLT1A2 LTR MaLR 0 374 5 406 158 0 13 chr1 169989253 169989329 -112204335 + LTR24C LTR ERV1 1 75 -560 1200 118 12 6 chr1 169989329 169989499 -112204165 + AluSp SINE Alu 1 171 -142 2597 128 30 40 chr1 169989607 169989654 -112204010 + LTR24C LTR ERV1 126 172 -463 2275 104 7 0 chr1 169989654 169989962 -112203702 - AluY SINE Alu -1 310 1 2597 128 30 40 chr1 169989962 169990197 -112203467 + LTR24C LTR ERV1 172 404 -231 2076 137 0 31 chr1 169990197 169990519 -112203145 + AluSx SINE Alu 1 312 0 2597 128 30 40 chr1 169990519 169990710 -112202954 + LTR24C LTR ERV1 404 595 -40 336 130 0 0 chr1 169990743 169990797 -112202867 + LTR24C LTR ERV1 582 635 0 1006 154 45 89 chr1 169990797 169991044 -112202620 + MER31B LTR ERV1 13 248 -218 421 153 12 2 chr1 169991046 169991125 -112202539 + LTR49 LTR ERV1 11 121 -464 331 318 17 12 chr1 169991350 169991523 -112202141 - MER41B LTR ERV1 -204 431 258 738 186 63 140 chr1 169991754 169991937 -112201727 + LTR49 LTR ERV1 78 274 -321 2019 124 10 7 chr1 169991937 169992098 -112201566 - AluSx SINE Alu -19 293 134 188 86 29 0 chr1 169992098 169992133 -112201531 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2300 78 0 4 chr1 169992134 169992415 -112201249 - AluY SINE Alu -31 280 1 2019 124 10 7 chr1 169992415 169992541 -112201123 - AluSx SINE Alu -177 135 3 738 186 63 140 chr1 169992541 169992642 -112201022 + LTR49 LTR ERV1 274 340 -255 2257 99 3 20 chr1 169992726 169993028 -112200636 - AluSp SINE Alu -16 297 1 450 45 91 0 chr1 169993053 169993119 -112200545 - MLT2A2 LTR ERVL 0 453 382 1104 100 44 0 chr1 169993121 169993281 -112200383 - BC200 scRNA scRNA -33 167 1 2462 101 51 6 chr1 169993282 169993637 -112200027 - MLT2A2 LTR ERVL -59 394 24 2117 84 45 17 chr1 169994319 169994606 -112199058 - AluSx SINE Alu -17 295 1 297 39 59 0 chr1 169994730 169994781 -112198883 + (TA)n Simple_repeat Simple_repeat 1 54 0 2305 102 0 0 chr1 169994880 169995174 -112198490 - AluSx SINE Alu -10 302 9 236 139 28 0 chr1 169995144 169995180 -112198484 - Alu SINE Alu -264 38 2 407 300 105 16 chr1 169995394 169995584 -112198080 - Charlie4 DNA MER1_type -3 1958 1752 306 140 18 0 chr1 169995585 169995642 -112198022 + AluSp/q SINE Alu 240 297 -6 1785 135 0 8 chr1 169995845 169996105 -112197559 + AluSx SINE Alu 24 318 0 239 0 81 0 chr1 169996105 169996142 -112197522 + A-rich Low_complexity Low_complexity 1 180 0 2885 108 91 9 chr1 169996145 169996608 -112197056 + MER51D LTR ERV1 155 655 -2 1965 168 8 26 chr1 169996610 169996961 -112196703 + MER72 LTR ERV1 157 501 -221 1019 156 0 59 chr1 169997325 169997511 -112196153 - AluSg/x SINE Alu -4 306 132 635 53 0 0 chr1 169997958 169998033 -112195631 - tRNA-Asn-AAC tRNA tRNA -2 75 1 245 298 48 0 chr1 169999126 169999230 -112194434 - L1MC/D LINE L1 -2066 5742 5634 519 197 38 8 chr1 169999262 169999394 -112194270 - L1MEc LINE L1 -4258 2305 2170 593 265 114 4 chr1 169999488 169999752 -112193912 - L1MEc LINE L1 -4543 2020 1728 28 61 0 0 chr1 169999857 169999906 -112193758 + AT_rich Low_complexity Low_complexity 1 49 0 298 234 56 47 chr1 170000969 170001076 -112192588 - L2 LINE L2 -798 2516 2409 2634 131 34 23 chr1 170001116 170001558 -112192106 + LTR49 LTR ERV1 1 447 -148 3047 104 29 18 chr1 170001564 170002007 -112191657 - LTR7 LTR ERV1 -2 448 1 2385 98 50 13 chr1 170002007 170002383 -112191281 - HERVH LTR ERV1 0 7713 7324 1317 163 0 5 chr1 170002383 170002604 -112191060 - HERVH LTR ERV1 -1894 5819 5600 4565 118 5 0 chr1 170002605 170003250 -112190414 - HERVH LTR ERV1 -2564 5149 4502 1224 202 95 0 chr1 170003250 170003503 -112190161 - L1MEc LINE L1 -6090 294 18 997 174 111 178 chr1 170003600 170003820 -112189844 - MER4C-int LTR ERV1 -5595 1003 770 2099 115 0 38 chr1 170003820 170004133 -112189531 - AluY SINE Alu -6 305 5 997 174 111 178 chr1 170004133 170004163 -112189501 - MER4C-int LTR ERV1 -5828 770 740 417 20 0 0 chr1 170004163 170004213 -112189451 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 997 174 111 178 chr1 170004213 170004495 -112189169 - MER4C-int LTR ERV1 -5858 740 506 1097 52 0 0 chr1 170004495 170004629 -112189035 - AluY SINE Alu 0 311 178 2701 97 77 35 chr1 170004629 170005084 -112188580 - MER4C-int LTR ERV1 -6124 474 1 356 91 0 18 chr1 170005086 170005141 -112188523 - MER4C LTR ERV1 0 465 412 572 209 167 65 chr1 170006019 170006234 -112187430 - MLT1E2 LTR MaLR -330 296 60 2009 205 35 31 chr1 170006234 170006275 -112187389 + L1M4 LINE L1 2297 2336 -3810 3505 145 0 4 chr1 170006275 170006772 -112186892 + LOR1a LTR ERV1 3 497 0 2009 205 35 31 chr1 170006772 170007213 -112186451 + L1M4 LINE L1 2336 2781 -3365 1542 207 58 7 chr1 170007928 170008043 -112185621 + AluJo SINE Alu 1 109 -203 219 103 0 0 chr1 170008043 170008082 -112185582 + (CA)n Simple_repeat Simple_repeat 2 40 0 1542 207 58 7 chr1 170008082 170008261 -112185403 + AluJo SINE Alu 109 310 -2 535 217 0 0 chr1 170008345 170008451 -112185213 - AluJo/FRAM SINE Alu -1 311 206 1919 102 20 0 chr1 170008452 170008706 -112184958 - AluY SINE Alu -52 259 1 885 161 7 20 chr1 170008706 170008855 -112184809 - AluJb SINE Alu -165 147 1 512 179 9 9 chr1 170009512 170009618 -112184046 - L1MB8 LINE L1 -9 6169 6064 181 280 151 43 chr1 170010005 170010098 -112183566 - MIR SINE MIR -61 147 45 426 263 212 15 chr1 170011047 170011245 -112182419 + MIR SINE MIR 5 241 -21 1954 142 26 3 chr1 170011521 170011824 -112181840 + AluSx SINE Alu 1 310 -2 237 283 75 9 chr1 170011828 170011934 -112181730 + MIR SINE MIR 34 146 -116 533 272 94 43 chr1 170012378 170012613 -112181051 + MIR SINE MIR 6 252 -10 229 303 83 37 chr1 170013071 170013180 -112180484 + L3 LINE CR1 1462 1575 -2 183 307 89 30 chr1 170013179 170013280 -112180384 - L2 LINE L2 -15 3257 3151 * 2188 119 153 21 chr1 170013294 170013672 -112179992 - MSTA LTR MaLR 0 428 1 2085 135 3 3 chr1 170013750 170014047 -112179617 - AluSx SINE Alu -15 297 1 1929 156 0 38 chr1 170014372 170014686 -112178978 + AluSx SINE Alu 1 302 -10 1949 168 0 0 chr1 170015222 170015520 -112178144 - AluJb SINE Alu -14 298 1 3295 236 78 81 chr1 170015596 170016299 -112177365 - L1MEc LINE L1 -4759 1637 933 1744 169 18 0 chr1 170016299 170016601 -112177063 - AluSx SINE Alu 0 307 1 3295 236 78 81 chr1 170016601 170017017 -112176647 - L1MEc LINE L1 -5463 933 517 1485 137 22 9 chr1 170017017 170017243 -112176421 - L1MC1 LINE L1 -5 6328 6100 1973 133 34 77 chr1 170017246 170017598 -112176066 - MER1B DNA MER1_type 0 337 1 3295 236 78 81 chr1 170017598 170018080 -112175584 - L1MEc LINE L1 -5881 515 35 360 331 78 13 chr1 170018120 170018302 -112175362 + MIR SINE MIR 3 198 -63 1617 183 7 14 chr1 170020463 170020753 -112172911 - AluJo SINE Alu -24 288 1 2009 152 7 0 chr1 170021550 170021853 -112171811 + AluSx SINE Alu 1 305 -7 1490 138 0 0 chr1 170023556 170023773 -112169891 + AluSg/x SINE Alu 95 311 -1 424 343 17 17 chr1 170024735 170024907 -112168757 - MER5B DNA MER1_type 0 178 7 1955 104 48 57 chr1 170025306 170025622 -112168042 + AluSp SINE Alu 1 313 0 210 37 0 0 chr1 170025625 170025652 -112168012 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 204 375 104 7 chr1 170025863 170026007 -112167657 + MIR3 SINE MIR 44 201 -7 1123 206 110 83 chr1 170027256 170027722 -112165942 - MER66A LTR ERV1 0 481 100 2459 132 3 0 chr1 170027768 170028117 -112165547 - MER66A-int LTR ERV1 0 6676 6327 1228 212 96 91 chr1 170028159 170028346 -112165318 - MER66-int LTR ERV1 -1643 6113 5928 2141 115 6 42 chr1 170028346 170028658 -112165006 + AluSg SINE Alu 1 301 -9 1228 212 96 91 chr1 170028658 170028928 -112164736 - MER66-int LTR ERV1 -1828 5928 4548 681 175 33 0 chr1 170029196 170029316 -112164348 - Tigger2 DNA MER2_type -261 2457 2334 8817 274 46 32 chr1 170034414 170035464 -112158200 - MER66-int LTR ERV1 -1911 5845 4811 2108 118 0 0 chr1 170035464 170035752 -112157912 - AluSx SINE Alu -14 298 11 8817 274 46 32 chr1 170035752 170037305 -112156359 - MER66-int LTR ERV1 -2945 4811 3281 1823 176 14 0 chr1 170037305 170037600 -112156064 - AluSx SINE Alu -7 305 7 8817 274 46 32 chr1 170037600 170039814 -112153850 - MER66-int LTR ERV1 -4475 3281 1211 307 241 108 114 chr1 170039919 170040085 -112153579 - MER66-int LTR ERV1 -3574 3102 2938 1257 177 160 84 chr1 170040147 170040503 -112153161 - MER66-int LTR ERV1 -5562 1114 732 185 173 58 0 chr1 170040510 170040562 -112153102 + (TCCTG)n Simple_repeat Simple_repeat 4 58 0 1082 208 150 49 chr1 170040577 170041008 -112152656 - MER66A LTR ERV1 0 606 100 680 226 91 52 chr1 170041623 170041932 -112151732 - L1MC4 LINE L1 -2 8040 7720 212 232 0 14 chr1 170041962 170042031 -112151633 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 23 0 0 0 chr1 170042061 170042084 -112151580 + AT_rich Low_complexity Low_complexity 1 23 0 2034 174 35 0 chr1 170042115 170042459 -112151205 + MER57A LTR ERV1 14 369 -34 210 191 29 15 chr1 170042459 170042527 -112151137 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 295 261 43 0 chr1 170042863 170042932 -112150732 + tRNA-His-CAC tRNA tRNA 1 72 -3 350 210 101 8 chr1 170043589 170043708 -112149956 - L1ME3 LINE L1 -7 6155 6026 791 171 8 8 chr1 170043720 170043843 -112149821 + FLAM_C SINE Alu 2 124 -19 550 237 209 37 chr1 170043859 170044184 -112149480 - L1ME1 LINE L1 -108 6058 5678 407 144 11 33 chr1 170044200 170044290 -112149374 + MER74B LTR ERVL 1 88 -534 481 221 9 0 chr1 170044290 170044403 -112149261 - L1MA10 LINE L1 0 6334 6221 2432 60 0 20 chr1 170044403 170044704 -112148960 + AluY SINE Alu 1 295 -16 938 136 0 0 chr1 170044736 170044868 -112148796 + AluSq/x SINE Alu 1 132 -180 1314 146 0 14 chr1 170044868 170045081 -112148583 - L1MA4 LINE L1 -11 6289 6080 1172 139 0 11 chr1 170044896 170045083 -112148581 - L1MA4 LINE L1 -38 6262 6078 493 278 81 67 chr1 170045078 170045230 -112148434 - L1ME LINE L1 -5714 356 208 * 4841 167 36 9 chr1 170045230 170046129 -112147535 + MER49 LTR ERV1 1 923 0 493 278 81 67 chr1 170046129 170046321 -112147343 - L1ME LINE L1 -5862 208 7 208 319 14 28 chr1 170046388 170046460 -112147204 + MIR SINE MIR 78 148 -114 536 82 0 14 chr1 170046691 170046764 -112146900 - tRNA-Glu-GAG tRNA tRNA -3 72 1 194 183 37 134 chr1 170047497 170047579 -112146085 + MIR3 SINE MIR 15 88 -120 1287 180 107 0 chr1 170048561 170048822 -112144842 - AluJb SINE Alu -23 289 1 381 164 16 0 chr1 170050779 170050840 -112142824 + tRNA-Val-GTG tRNA tRNA 1 62 -14 1463 136 0 0 chr1 170050847 170051068 -112142596 + AluSp SINE Alu 93 313 0 427 180 16 31 chr1 170051124 170051252 -112142412 + L1MEc LINE L1 996 1121 -5275 1894 95 0 39 chr1 170051262 170051400 -112142264 + AluY SINE Alu 2 144 -167 423 0 0 0 chr1 170051400 170051447 -112142217 + (TA)n Simple_repeat Simple_repeat 2 48 0 1894 95 0 39 chr1 170051447 170051614 -112142050 + AluY SINE Alu 144 295 -16 241 242 23 78 chr1 170051647 170051775 -112141889 + L1MEc LINE L1 1662 1782 -4614 1817 121 0 0 chr1 170051839 170052096 -112141568 + AluSx SINE Alu 1 257 -55 529 149 132 50 chr1 170052250 170052371 -112141293 - FLAM_C SINE Alu -2 131 1 550 96 0 0 chr1 170052395 170052468 -112141196 - tRNA-Asn-AAC tRNA tRNA -3 74 2 2106 88 3 14 chr1 170053145 170053439 -112140225 + AluSx SINE Alu 1 291 -21 388 191 0 0 chr1 170053504 170053572 -112140092 + tRNA-His-CAC tRNA tRNA 6 73 -2 674 207 64 0 chr1 170054065 170054205 -112139459 - U1 snRNA snRNA -14 151 3 428 132 0 0 chr1 170055243 170055311 -112138353 - tRNA-Glu-GAG tRNA tRNA -3 72 5 324 311 30 24 chr1 170055793 170055957 -112137707 + L2 LINE L2 2351 2515 -799 232 223 45 139 chr1 170056012 170056214 -112137450 - MER20 DNA MER1_type -36 183 1 1038 159 97 18 chr1 170057097 170057323 -112136341 - MLT1A1 LTR MaLR 0 365 122 670 245 170 53 chr1 170057366 170057859 -112135805 + L1ME2 LINE L1 4697 5247 -899 3140 183 28 26 chr1 170059035 170059651 -112134013 + MER49 LTR ERV1 307 923 0 443 230 61 48 chr1 170059664 170059933 -112133731 + L1ME2 LINE L1 5200 5471 -703 919 121 189 47 chr1 170059933 170060123 -112133541 - AluSg/x SINE Alu -14 296 80 809 250 134 29 chr1 170060126 170060666 -112132998 + L1ME2 LINE L1 5461 6148 -16 606 138 0 11 chr1 170060683 170060777 -112132887 + AluSg/x SINE Alu 193 285 -25 320 206 15 15 chr1 170061233 170061301 -112132363 - tRNA-His-CAC tRNA tRNA -3 72 5 2282 83 13 0 chr1 170061557 170061858 -112131806 - AluSx SINE Alu -7 305 1 577 45 0 0 chr1 170062553 170062620 -112131044 - tRNA-Gly-GGG tRNA tRNA -7 67 1 1840 113 0 45 chr1 170064159 170064485 -112129179 + AluSc SINE Alu 1 313 0 1702 204 19 27 chr1 170064770 170065143 -112128521 - MLT1A2 LTR MaLR 0 374 5 654 0 0 14 chr1 170066428 170066502 -112127162 - tRNA-Val-GTG tRNA tRNA -3 73 1 411 53 70 0 chr1 170066576 170066633 -112127031 + Alu SINE Alu 227 287 -22 14099 207 32 16 chr1 170068114 170069548 -112124116 + L1P4 LINE L1 709 2119 -4104 1850 115 54 0 chr1 170069548 170069827 -112123837 + AluSq SINE Alu 3 296 -17 14099 207 32 16 chr1 170069827 170072010 -112121654 + L1P4 LINE L1 2119 4266 -1957 306 0 0 0 chr1 170072010 170072044 -112121620 + (CA)n Simple_repeat Simple_repeat 1 34 0 14099 207 32 16 chr1 170072044 170072301 -112121363 + L1P4 LINE L1 4266 4517 -1706 1841 149 7 7 chr1 170072301 170072602 -112121062 + AluSx SINE Alu 1 301 -11 14099 207 32 16 chr1 170072602 170073397 -112120267 + L1P4 LINE L1 4517 5528 -695 31 44 0 0 chr1 170073751 170073796 -112119868 + AT_rich Low_complexity Low_complexity 1 45 0 1541 245 76 14 chr1 170077045 170077478 -112116186 + MLT1C LTR MaLR 6 465 -2 494 311 49 0 chr1 170079385 170079549 -112114115 + MIR SINE MIR 79 250 -12 2135 124 0 0 chr1 170079660 170079967 -112113697 + AluSq SINE Alu 1 307 -6 1637 156 13 38 chr1 170081253 170081567 -112112097 + AluJo SINE Alu 5 310 -2 34 24 0 0 chr1 170081907 170081948 -112111716 + AT_rich Low_complexity Low_complexity 1 41 0 1593 216 25 14 chr1 170083706 170084068 -112109596 + L1MC1 LINE L1 3875 4240 -1906 1355 119 5 9 chr1 170084069 170084279 -112109385 + AluSg/x SINE Alu 94 302 -10 1825 100 96 0 chr1 170084279 170084559 -112109105 + AluY SINE Alu 1 307 -4 2577 219 27 18 chr1 170084616 170085283 -112108381 + L1MC1 LINE L1 4422 5094 -1052 24 0 0 0 chr1 170085347 170085371 -112108293 + AT_rich Low_complexity Low_complexity 1 24 0 636 187 19 0 chr1 170085423 170085530 -112108134 - FRAM SINE Alu -69 107 1 6346 137 38 11 chr1 170085537 170086754 -112106910 + L1MC1 LINE L1 5087 6333 0 22 0 0 0 chr1 170086771 170086793 -112106871 + AT_rich Low_complexity Low_complexity 1 22 0 411 343 29 0 chr1 170086818 170086958 -112106706 + MIR3 SINE MIR 34 177 -31 2149 92 3 0 chr1 170086961 170087292 -112106372 - AluSx SINE Alu 0 332 1 632 234 87 75 chr1 170090428 170090539 -112103125 - MIR SINE MIR 0 262 154 1794 124 10 27 chr1 170090539 170090873 -112102791 - AluSx SINE Alu 0 312 1 632 234 87 75 chr1 170090873 170091013 -112102651 - MIR SINE MIR -108 154 8 438 181 29 58 chr1 170091087 170091224 -112102440 + L1ME LINE L1 5414 5559 -562 1789 195 80 18 chr1 170091619 170092009 -112101655 + MLT2D LTR ERVL 1 414 0 1905 121 7 0 chr1 170092262 170092543 -112101121 - AluSx SINE Alu -29 283 1 447 286 15 48 chr1 170092556 170092840 -112100824 + L1MC/D LINE L1 5466 5744 -377 287 241 25 25 chr1 170092993 170093072 -112100592 - MIR SINE MIR -103 159 81 586 105 0 0 chr1 170093281 170093357 -112100307 - tRNA-Asn-AAC tRNA tRNA -1 76 1 2513 187 50 42 chr1 170093681 170094227 -112099437 + MER89 LTR ERV1 1 550 -9 575 150 0 90 chr1 170094437 170094570 -112099094 - MLT1A1 LTR MaLR -244 121 1 318 200 14 0 chr1 170094577 170094656 -112099008 - L1P5 LINE L1 -700 5451 5372 369 257 0 0 chr1 170094946 170095020 -112098644 + tRNA-His-CAC tRNA tRNA 2 75 0 1152 218 112 14 chr1 170095527 170096114 -112097550 - L1ME2 LINE L1 -9 6155 5471 1980 160 19 33 chr1 170096116 170096478 -112097186 - MLT1A1 LTR MaLR -8 357 1 725 244 76 33 chr1 170096487 170096923 -112096741 - L1ME2 LINE L1 -724 5446 4982 398 212 91 10 chr1 170097254 170097353 -112096311 + MIR SINE MIR 51 157 -105 2389 112 0 0 chr1 170097359 170097671 -112095993 + AluSx SINE Alu 1 312 0 2643 235 34 22 chr1 170097795 170099020 -112094644 - L1ME2 LINE L1 -187 5977 4738 292 304 27 9 chr1 170099092 170099204 -112094460 - HAL1 LINE L1 -1953 554 441 210 91 0 0 chr1 170099293 170099326 -112094338 + (T)n Simple_repeat Simple_repeat 1 33 0 25 31 0 0 chr1 170099544 170099576 -112094088 + AT_rich Low_complexity Low_complexity 1 32 0 325 121 15 15 chr1 170100517 170100583 -112093081 + GA-rich Low_complexity Low_complexity 4 69 0 490 274 102 0 chr1 170100606 170100763 -112092901 - L2 LINE L2 -797 2517 2345 364 186 43 0 chr1 170101286 170101356 -112092308 + tRNA-Glu-GAG tRNA tRNA 1 73 -2 249 297 109 22 chr1 170101477 170101615 -112092049 - L1MC/D LINE L1 -2150 5658 5509 21 36 0 0 chr1 170101846 170101874 -112091790 + AT_rich Low_complexity Low_complexity 1 28 0 236 149 75 15 chr1 170102128 170102195 -112091469 + (TTTAA)n Simple_repeat Simple_repeat 3 73 0 35 24 0 0 chr1 170102287 170102329 -112091335 + AT_rich Low_complexity Low_complexity 1 42 0 284 174 47 47 chr1 170102424 170102510 -112091154 - L1MC4 LINE L1 -1342 6700 6615 239 225 22 67 chr1 170102431 170102520 -112091144 + L1MC4 LINE L1 6612 6696 -1346 * 272 242 16 0 chr1 170103514 170103576 -112090088 + L1MDa LINE L1 1789 1851 -4689 533 157 34 11 chr1 170103578 170103667 -112089997 - HERVL40 LTR ERVL -1931 3599 3509 1212 243 17 49 chr1 170103692 170103980 -112089684 - HERVL40 LTR ERVL -3202 2328 2050 398 296 88 46 chr1 170103980 170104196 -112089468 - HERVL40 LTR ERVL -3913 1617 1393 2217 100 36 10 chr1 170104467 170104768 -112088896 - AluSq SINE Alu -4 309 1 655 298 99 59 chr1 170105108 170105481 -112088183 - REP3 LTR ERV -116 446 59 1966 65 0 0 chr1 170105585 170105865 -112087799 - AluY SINE Alu 0 333 54 3235 163 19 60 chr1 170106583 170107221 -112086443 - LTR9 LTR ERV1 0 612 1 313 277 116 45 chr1 170107784 170108008 -112085656 - HAL1b LINE L1 -857 491 252 202 0 91 0 chr1 170108105 170108138 -112085526 + A-rich Low_complexity Low_complexity 2 37 0 3751 133 48 5 chr1 170108217 170108795 -112084869 - LTR26 LTR ERV1 0 603 1 336 141 209 25 chr1 170108816 170108913 -112084751 + AluSc SINE Alu 197 299 0 1104 101 0 0 chr1 170109419 170109558 -112084106 - AluSx SINE Alu -152 160 22 473 181 0 0 chr1 170109752 170109824 -112083840 - tRNA-Gly-GGG tRNA tRNA 0 74 3 212 364 78 19 chr1 170111311 170111465 -112082199 + L2 LINE L2 2561 2723 -591 425 285 91 63 chr1 170111932 170112392 -112081272 - L1MEc LINE L1 -3768 2447 2001 2085 103 48 7 chr1 170112392 170112684 -112080980 - AluSc SINE Alu -5 304 1 425 285 91 63 chr1 170112684 170113677 -112079987 - L1MEc LINE L1 -4214 2001 991 240 343 0 14 chr1 170115284 170115357 -112078307 - tRNA-Gly-GGG tRNA tRNA -2 72 1 328 127 18 0 chr1 170116359 170116414 -112077250 - MER116 DNA Mariner -24 56 1 362 313 65 30 chr1 170116451 170116681 -112076983 - L1ME LINE L1 -535 5586 5349 1807 152 0 0 chr1 170116773 170117036 -112076628 + AluSx SINE Alu 1 263 -49 220 264 242 0 chr1 170117054 170117145 -112076519 + L2 LINE L2 3201 3313 0 1540 243 209 8 chr1 170117637 170118226 -112075438 + LTR50 LTR ERVL 38 744 -51 2808 143 38 6 chr1 170118347 170118817 -112074847 + L1MB3 LINE L1 5550 6034 -149 1917 195 80 18 chr1 170119529 170119919 -112073745 + MLT2D LTR ERVL 1 414 0 1961 128 7 0 chr1 170120171 170120452 -112073212 - AluSx SINE Alu -29 283 1 504 253 28 60 chr1 170120489 170120749 -112072915 + L1ME LINE L1 5497 5744 -377 263 253 25 25 chr1 170120902 170120981 -112072683 - MIR SINE MIR -103 159 81 574 132 0 0 chr1 170121190 170121266 -112072398 - tRNA-Asn-AAC tRNA tRNA -1 76 1 2488 187 50 42 chr1 170121598 170122144 -112071520 + MER89 LTR ERV1 1 550 -9 558 158 0 90 chr1 170122354 170122487 -112071177 - MLT1A1 LTR MaLR -244 121 1 321 185 14 0 chr1 170122494 170122573 -112071091 - L1P5 LINE L1 -700 5451 5372 347 268 0 0 chr1 170122863 170122934 -112070730 + tRNA-His-CAC tRNA tRNA 2 72 -3 956 207 138 24 chr1 170123444 170123863 -112069801 - L1ME2 LINE L1 -9 6155 5651 325 121 15 15 chr1 170124598 170124664 -112069000 + GA-rich Low_complexity Low_complexity 4 69 0 454 287 102 0 chr1 170124687 170124844 -112068820 - L2 LINE L2 -797 2517 2345 396 171 43 0 chr1 170125366 170125436 -112068228 + tRNA-Glu-GAG tRNA tRNA 1 73 -2 264 290 109 22 chr1 170125557 170125695 -112067969 - L1ME2 LINE L1 -2150 5658 5509 21 36 0 0 chr1 170125926 170125954 -112067710 + AT_rich Low_complexity Low_complexity 1 28 0 220 164 75 15 chr1 170126208 170126275 -112067389 + (TTTAA)n Simple_repeat Simple_repeat 3 73 0 35 24 0 0 chr1 170126367 170126409 -112067255 + AT_rich Low_complexity Low_complexity 1 42 0 240 263 32 21 chr1 170126520 170126615 -112067049 + L1MC4 LINE L1 6611 6706 -1336 272 242 16 0 chr1 170127599 170127661 -112066003 + L1MDa LINE L1 1789 1851 -4689 522 157 34 11 chr1 170127663 170127752 -112065912 - HERVL40 LTR ERVL -1931 3599 3509 1195 246 17 49 chr1 170127778 170128066 -112065598 - HERVL40 LTR ERVL -3202 2328 2050 409 292 88 46 chr1 170128066 170128282 -112065382 - HERVL40 LTR ERVL -3913 1617 1393 253 350 26 0 chr1 170128425 170128542 -112065122 - HERVL40 LTR ERVL -4313 1217 1098 2136 113 36 10 chr1 170128553 170128855 -112064809 - AluSq SINE Alu -3 310 1 633 303 99 59 chr1 170129195 170129568 -112064096 - REP3 LTR ERV -116 446 59 1925 74 0 0 chr1 170129672 170129964 -112063700 - AluY SINE Alu 0 345 54 3175 161 17 70 chr1 170130682 170130808 -112062856 - LTR9 LTR ERV1 0 612 481 2154 29 115 4 chr1 170130808 170131086 -112062578 + AluY SINE Alu 1 309 -2 3175 161 17 70 chr1 170131086 170131605 -112062059 - LTR9 LTR ERV1 -131 481 1 332 272 116 45 chr1 170132168 170132392 -112061272 - HAL1b LINE L1 -857 491 252 225 83 0 0 chr1 170132491 170132527 -112061137 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 3784 137 47 3 chr1 170132606 170133184 -112060480 - LTR26 LTR ERV1 0 603 1 316 152 209 25 chr1 170133205 170133302 -112060362 + AluSc SINE Alu 197 299 0 1117 93 0 0 chr1 170133808 170133947 -112059717 - AluSx SINE Alu -152 160 22 473 181 0 0 chr1 170134141 170134213 -112059451 - tRNA-Gly-GGG tRNA tRNA 0 74 3 212 364 78 19 chr1 170135700 170135854 -112057810 + L2 LINE L2 2561 2723 -591 342 288 97 64 chr1 170136321 170136778 -112056886 - L1MEc LINE L1 -3768 2447 2007 2130 84 49 7 chr1 170136778 170137063 -112056601 - AluSc SINE Alu -12 297 1 342 288 97 64 chr1 170137063 170138037 -112055627 - L1MEc LINE L1 -4208 2007 1005 240 343 0 14 chr1 170139659 170139732 -112053932 - tRNA-Gly-GGG tRNA tRNA -2 72 1 328 127 18 0 chr1 170140734 170140789 -112052875 - MER116 DNA Mariner -24 56 1 372 316 61 30 chr1 170140826 170141057 -112052607 - L1ME LINE L1 -535 5586 5349 1849 144 0 0 chr1 170141149 170141412 -112052252 + AluSx SINE Alu 1 263 -49 220 264 242 0 chr1 170141430 170141521 -112052143 + L2 LINE L2 3201 3313 0 2757 26 0 0 chr1 170141976 170142281 -112051383 + AluYb8 SINE Alu 1 305 -13 1463 247 211 9 chr1 170142324 170142925 -112050739 + LTR50 LTR ERVL 38 773 -22 1107 236 163 8 chr1 170142925 170143183 -112050481 - AluSg SINE Alu -2 298 1 1463 247 211 9 chr1 170143183 170143212 -112050452 + LTR50 LTR ERVL 773 795 0 2858 97 16 5 chr1 170143291 170143662 -112050002 - THE1C LTR MaLR 0 375 1 9806 104 94 3 chr1 170143662 170145111 -112048553 - THE1C-int LTR MaLR 0 1580 1 2842 99 11 5 chr1 170145111 170145484 -112048180 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr1 170145826 170145864 -112047800 + AT_rich Low_complexity Low_complexity 1 38 0 2000 153 7 0 chr1 170146333 170146634 -112047030 + AluSx SINE Alu 1 303 -9 2933 171 149 34 chr1 170147310 170147813 -112045851 - LTR48 LTR ERV1 0 787 178 2081 130 0 3 chr1 170147813 170148159 -112045505 - AluSx SINE Alu 0 346 2 2933 171 149 34 chr1 170148159 170148360 -112045304 - LTR48 LTR ERV1 -609 178 1 1118 142 6 0 chr1 170148935 170149117 -112044547 - AluJo SINE Alu 0 302 120 1965 100 19 8 chr1 170149136 170149395 -112044269 - AluSg SINE Alu -48 262 1 271 298 61 5 chr1 170149624 170149757 -112043907 + MIR SINE MIR 26 167 -63 1772 163 21 0 chr1 170150020 170150303 -112043361 + AluJb SINE Alu 1 289 -23 1185 302 97 30 chr1 170150396 170151524 -112042140 + L1P3 LINE L1 4283 5483 -671 3274 108 38 57 chr1 170151535 170152157 -112041507 + MER4B LTR ERV1 1 779 0 252 336 9 16 chr1 170152157 170152292 -112041372 + L1M3 LINE L1 5485 5619 -547 1130 233 82 75 chr1 170152299 170152570 -112041094 - L1MEc LINE L1 -4813 1583 1315 713 190 247 103 chr1 170152570 170153064 -112040600 - MER34B LTR ERV1 0 565 1 1130 233 82 75 chr1 170153064 170153122 -112040542 - L1MEc LINE L1 -5081 1315 1259 4752 95 14 6 chr1 170153122 170153752 -112039912 - MER41B LTR ERV1 0 635 1 1130 233 82 75 chr1 170153752 170153785 -112039879 - L1MEc LINE L1 -5137 1259 1228 5200 103 30 1 chr1 170153785 170154487 -112039177 - LTR30 LTR ERV1 0 722 1 1130 233 82 75 chr1 170154487 170154707 -112038957 - L1MEc LINE L1 -5168 1228 995 600 250 92 0 chr1 170154708 170154872 -112038792 - L1MEc LINE L1 -5781 615 437 1349 229 64 31 chr1 170154895 170155318 -112038346 + LTR56 LTR ERV1 9 445 0 1464 230 22 52 chr1 170155342 170155747 -112037917 - L1MEc LINE L1 -5959 437 45 1911 173 0 3 chr1 170157105 170157405 -112036259 - AluJb SINE Alu -13 299 1 2316 96 0 3 chr1 170157587 170157880 -112035784 + AluSc SINE Alu 1 292 -17 1730 116 19 19 chr1 170157952 170158210 -112035454 - L1PA11 LINE L1 -5 6169 5912 567 238 133 17 chr1 170158558 170158739 -112034925 + MIR SINE MIR 41 242 -20 539 251 28 60 chr1 170158772 170159023 -112034641 + L1ME LINE L1 5570 5812 -309 299 328 23 23 chr1 170159335 170159466 -112034198 - MLT1H LTR MaLR -315 234 104 209 108 27 0 chr1 170162337 170162374 -112031290 + (TA)n Simple_repeat Simple_repeat 2 39 0 445 303 100 34 chr1 170162398 170162718 -112030946 - L1MC4a LINE L1 -157 5947 5604 730 95 0 0 chr1 170163102 170163197 -112030467 - AluSg/x SINE Alu -4 306 212 1107 226 201 20 chr1 170163380 170163788 -112029876 - L1ME3A LINE L1 -8 6162 5681 597 219 118 14 chr1 170163879 170164198 -112029466 - L1MC4a LINE L1 -742 5405 5063 227 304 36 9 chr1 170164383 170164495 -112029169 - L1MC4a LINE L1 -3164 2965 2851 277 287 96 35 chr1 170164505 170164735 -112028929 - L1MC4a LINE L1 -3316 2813 2570 2215 222 132 2 chr1 170165269 170165792 -112027872 - MLT1E LTR MaLR 0 593 3 456 250 45 70 chr1 170166351 170166507 -112027157 - MIR3 SINE MIR -37 171 20 1144 58 0 0 chr1 170166950 170167125 -112026539 + AluY SINE Alu 146 320 0 1583 136 195 21 chr1 170167241 170167528 -112026136 + MER1B DNA MER1_type 1 337 0 225 70 53 53 chr1 170168216 170168273 -112025391 + CT-rich Low_complexity Low_complexity 4 60 0 203 143 13 52 chr1 170168318 170168395 -112025269 + CT-rich Low_complexity Low_complexity 2 75 0 29 47 0 0 chr1 170170708 170170751 -112022913 + GC_rich Low_complexity Low_complexity 1 43 0 1427 282 114 14 chr1 170171779 170172364 -112021300 - L2 LINE L2 -646 2668 2025 550 200 89 104 chr1 170172377 170172647 -112021017 - L1M4 LINE L1 -1506 4640 4375 1776 142 33 0 chr1 170172670 170172993 -112020671 + AluJb SINE Alu 1 332 0 4261 85 40 9 chr1 170173014 170173591 -112020073 + LTR61 LTR ERV1 1 595 0 2193 131 0 0 chr1 170174609 170174906 -112018758 - AluSx SINE Alu -15 297 1 1076 190 5 5 chr1 170175318 170175518 -112018146 - AluJb SINE Alu -39 273 74 279 337 88 33 chr1 170175786 170176184 -112017480 - L1M4 LINE L1 -3208 2938 2519 1706 161 4 4 chr1 170176329 170176596 -112017068 - AluJo SINE Alu -35 277 11 406 308 138 16 chr1 170176888 170177200 -112016464 - HAL1 LINE L1 -886 1621 1272 307 336 9 17 chr1 170177208 170177324 -112016340 - MER91C DNA MER1_type -25 115 1 396 277 26 78 chr1 170177374 170177503 -112016161 - L1MC4a LINE L1 -4988 1131 1018 4301 184 85 12 chr1 170177503 170178307 -112015357 - MER21B LTR ERV1 -1 862 1 396 277 26 78 chr1 170178307 170178408 -112015256 - L1MC4a LINE L1 -5101 1018 913 1877 167 0 0 chr1 170178497 170178796 -112014868 + AluJb SINE Alu 1 299 -13 297 275 194 25 chr1 170179183 170179343 -112014321 - MIR SINE MIR -72 190 4 2162 188 34 68 chr1 170180258 170180791 -112012873 - MLT2B3 LTR ERVL -39 515 1 553 272 0 14 chr1 170182302 170182449 -112011215 - MIR SINE MIR 0 262 118 379 284 95 0 chr1 170183374 170183490 -112010174 - L2 LINE L2 -2 3311 3185 757 274 37 18 chr1 170183540 170183888 -112009776 - MLT1J LTR MaLR -30 465 64 1066 278 128 27 chr1 170183939 170184004 -112009660 - L2 LINE L2 -140 3173 3116 2219 84 14 24 chr1 170184004 170184301 -112009363 + AluY SINE Alu 1 294 -17 1066 278 128 27 chr1 170184301 170184886 -112008778 - L2 LINE L2 -197 3116 2475 1756 148 4 22 chr1 170184920 170185197 -112008467 + AluJb SINE Alu 23 294 -18 2126 124 7 0 chr1 170185216 170185515 -112008149 + AluSx SINE Alu 1 301 -11 195 42 0 0 chr1 170185515 170185539 -112008125 + (GA)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr1 170185687 170185713 -112007951 + AT_rich Low_complexity Low_complexity 1 26 0 211 269 30 15 chr1 170185987 170186054 -112007610 + L2 LINE L2 3196 3263 -9 220 293 73 53 chr1 170188509 170188659 -112005005 + MER5A DNA MER1_type 34 186 -3 468 263 47 53 chr1 170188830 170189020 -112004644 - MER20 DNA MER1_type -2 217 29 380 241 183 22 chr1 170192713 170192850 -112000814 - MIR SINE MIR -41 221 63 2067 115 0 35 chr1 170192924 170193237 -112000427 - AluSx SINE Alu -10 302 1 1568 77 24 0 chr1 170194306 170194515 -111999149 - MER41B LTR ERV1 0 635 422 756 187 22 0 chr1 170194516 170194655 -111999009 + AluSg/x SINE Alu 141 282 -30 2162 93 0 26 chr1 170194743 170195054 -111998610 + AluY SINE Alu 3 305 -6 1742 183 104 48 chr1 170195192 170195634 -111998030 + MLT1C LTR MaLR 1 467 0 1070 99 66 0 chr1 170195634 170195786 -111997878 - Tigger4(Zombi) DNA MER2_type -2 2729 2568 * 2847 137 64 37 chr1 170195782 170195859 -111997805 - Tigger4(Zombi) DNA MER2_type -2200 531 458 2285 96 20 0 chr1 170195859 170196152 -111997512 - AluSx SINE Alu -13 299 1 2847 137 64 37 chr1 170196152 170196591 -111997073 - Tigger4(Zombi) DNA MER2_type -2273 458 1 1953 188 85 87 chr1 170197046 170197114 -111996550 - MLT1D LTR MaLR 0 505 438 2319 98 0 0 chr1 170197114 170197409 -111996255 + AluSq SINE Alu 2 296 -17 1953 188 85 87 chr1 170197409 170197846 -111995818 - MLT1D LTR MaLR -67 438 1 221 340 160 0 chr1 170198139 170198239 -111995425 - L2 LINE L2 -14 3258 3143 385 244 115 58 chr1 170198440 170198596 -111995068 + MIR SINE MIR 20 184 -78 276 309 88 76 chr1 170198707 170199066 -111994598 + L2 LINE L2 2013 2379 -935 2218 106 7 3 chr1 170199066 170199369 -111994295 + AluSx SINE Alu 3 306 -6 276 309 88 76 chr1 170199369 170199442 -111994222 + L2 LINE L2 2379 2450 -864 2325 79 0 55 chr1 170199486 170199815 -111993849 - AluY SINE Alu 0 311 1 2204 112 0 32 chr1 170199815 170200129 -111993535 - AluSg SINE Alu -6 304 1 1246 273 75 55 chr1 170200131 170200681 -111992983 + Charlie2b DNA MER1_type 123 683 -2099 219 88 0 0 chr1 170200835 170200869 -111992795 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 725 164 17 26 chr1 170200870 170200986 -111992678 - FLAM_C SINE Alu -27 116 2 2218 212 57 11 chr1 170200987 170201515 -111992149 + Charlie2b DNA MER1_type 837 1388 -1394 473 296 166 55 chr1 170201560 170201993 -111991671 - LTR67 LTR ERVL -70 487 7 1973 154 0 26 chr1 170203242 170203554 -111990110 + AluSx SINE Alu 1 304 -8 1853 144 4 0 chr1 170203742 170204020 -111989644 + AluJo SINE Alu 22 300 -12 1727 186 0 23 chr1 170205057 170205363 -111988301 + AluJo SINE Alu 1 299 -13 740 332 30 70 chr1 170205372 170205700 -111987964 + L2 LINE L2 2957 3271 -1 1729 156 22 0 chr1 170206014 170206284 -111987380 - Tigger3b DNA MER2_type 0 1231 956 3539 151 84 123 chr1 170206284 170207232 -111986432 + MER21A LTR ERV1 1 911 -20 6243 106 31 8 chr1 170207248 170208185 -111985479 - Tigger3b DNA MER2_type -271 960 2 294 164 65 12 chr1 170208682 170208771 -111984893 - L1M LINE L1 -811 5358 5258 1403 181 9 48 chr1 170209188 170209446 -111984218 - L1 LINE L1 -810 5336 5092 2290 93 0 7 chr1 170209446 170209736 -111983928 + AluSx SINE Alu 1 288 -24 1403 181 9 48 chr1 170209736 170209809 -111983855 - L1 LINE L1 -1054 5092 5018 3192 199 40 31 chr1 170209813 170210081 -111983583 + L1MA9 LINE L1 5530 5794 -518 9097 109 14 26 chr1 170210081 170210144 -111983520 + HSMAR2 DNA Mariner 1 63 -1239 2498 60 0 10 chr1 170210144 170210458 -111983206 + AluY SINE Alu 1 311 0 9097 109 14 26 chr1 170210458 170211711 -111981953 + HSMAR2 DNA Mariner 63 1301 -1 3192 199 40 31 chr1 170211711 170212182 -111981482 + L1MA9 LINE L1 5794 6276 -36 1440 96 0 0 chr1 170212194 170212371 -111981293 + AluSx SINE Alu 1 177 -135 242 153 51 161 chr1 170212625 170212699 -111980965 - MER112 DNA MER1_type -142 118 60 2561 53 0 3 chr1 170212699 170213000 -111980664 - AluY SINE Alu -11 300 1 242 153 51 161 chr1 170213000 170213043 -111980621 - MER112 DNA MER1_type -200 60 14 250 343 49 28 chr1 170213146 170213289 -111980375 + MIR SINE MIR 47 192 -70 335 299 62 21 chr1 170213523 170213667 -111979997 - MIR SINE MIR -2 260 111 1713 186 104 48 chr1 170214054 170214496 -111979168 + MLT1C LTR MaLR 1 467 0 1070 99 66 0 chr1 170214496 170214648 -111979016 - Tigger4(Zombi) DNA MER2_type -2 2729 2568 * 2703 138 62 62 chr1 170214644 170214721 -111978943 - Tigger4(Zombi) DNA MER2_type -2200 531 455 2310 94 20 0 chr1 170214721 170215020 -111978644 - AluSx SINE Alu -7 305 1 2703 138 62 62 chr1 170215020 170215079 -111978585 - Tigger4(Zombi) DNA MER2_type -2276 455 397 2807 13 0 0 chr1 170215079 170215383 -111978281 - AluYa5 SINE Alu -7 304 1 2703 138 62 62 chr1 170215383 170215776 -111977888 - Tigger4(Zombi) DNA MER2_type -2333 398 1 1998 184 85 87 chr1 170216231 170216299 -111977365 - MLT1D LTR MaLR 0 505 438 2403 87 0 0 chr1 170216299 170216597 -111977067 + AluSq SINE Alu 2 299 -14 1998 184 85 87 chr1 170216597 170217034 -111976630 - MLT1D LTR MaLR -67 438 1 221 340 160 0 chr1 170217327 170217427 -111976237 - L2 LINE L2 -14 3258 3143 371 250 115 58 chr1 170217628 170217784 -111975880 + MIR SINE MIR 20 184 -78 212 283 101 61 chr1 170217895 170218142 -111975522 + L2 LINE L2 2013 2269 -1045 2212 97 0 10 chr1 170218254 170218543 -111975121 + AluSx SINE Alu 3 288 -24 343 250 0 0 chr1 170218544 170218616 -111975048 - L1 LINE L1 -1057 5089 5018 3176 200 40 31 chr1 170218620 170218888 -111974776 + L1MA9 LINE L1 5530 5794 -518 8818 113 14 32 chr1 170218888 170218951 -111974713 + HSMAR2 DNA Mariner 1 64 -1238 2510 55 0 13 chr1 170218951 170219263 -111974401 + AluY SINE Alu 1 308 -3 8818 113 14 32 chr1 170219263 170220523 -111973141 + HSMAR2 DNA Mariner 64 1301 -1 3176 200 40 31 chr1 170220523 170220994 -111972670 + L1MA9 LINE L1 5794 6276 -36 2261 105 3 0 chr1 170221006 170221301 -111972363 + AluSp SINE Alu 1 296 -17 365 290 75 48 chr1 170221367 170221553 -111972111 + L2 LINE L2 3082 3272 0 305 220 0 0 chr1 170222009 170222068 -111971596 + MIR SINE MIR 72 130 -132 238 269 0 0 chr1 170222497 170222549 -111971115 + CT-rich Low_complexity Low_complexity 1 52 0 228 233 0 0 chr1 170222591 170222634 -111971030 + (CA)n Simple_repeat Simple_repeat 2 44 0 2581 50 7 0 chr1 170222844 170223142 -111970522 + AluY SINE Alu 1 300 -11 960 303 74 24 chr1 170223148 170223786 -111969878 + L1MC4a LINE L1 5265 5934 -1874 2109 158 16 11 chr1 170224710 170225078 -111968586 + L1MB8 LINE L1 5809 6178 0 1526 143 9 9 chr1 170225094 170225325 -111968339 + AluJo SINE Alu 30 260 -52 256 211 56 28 chr1 170225613 170225684 -111967980 + MIR SINE MIR 13 85 -177 2240 118 3 3 chr1 170226333 170226646 -111967018 + AluSq SINE Alu 1 313 0 754 257 69 5 chr1 170226656 170226858 -111966806 + MIR SINE MIR 35 249 -13 328 261 123 14 chr1 170226856 170226994 -111966670 - L2 LINE L2 0 3313 3161 * 1586 184 8 68 chr1 170227008 170227176 -111966488 + MLT1A2 LTR MaLR 2 138 -236 1589 142 82 21 chr1 170227176 170227457 -111966207 + AluJo SINE Alu 1 298 -14 1586 184 8 68 chr1 170227457 170227658 -111966006 + MLT1A2 LTR MaLR 138 349 -25 278 230 118 14 chr1 170227870 170227962 -111965702 + MIR3 SINE MIR 70 172 -36 677 236 118 31 chr1 170228844 170228987 -111964677 + L1ME LINE L1 5346 5475 -646 1990 97 8 0 chr1 170228987 170229245 -111964419 - AluSq SINE Alu -11 302 43 677 236 118 31 chr1 170229245 170229489 -111964175 + L1ME LINE L1 5475 5805 -316 24 0 0 0 chr1 170229686 170229710 -111963954 + AT_rich Low_complexity Low_complexity 1 24 0 813 229 17 6 chr1 170229795 170229970 -111963694 - MIR SINE MIR -84 178 2 2090 161 22 68 chr1 170232112 170232521 -111961143 + MLT1B LTR MaLR 1 390 0 263 261 337 0 chr1 170232575 170232667 -111960997 - MIR3 SINE MIR -16 192 70 492 304 47 18 chr1 170234052 170234223 -111959441 + MER5A DNA MER1_type 1 176 -13 852 209 166 54 chr1 170234274 170234624 -111959040 + L2 LINE L2 2158 2546 -768 25 0 0 0 chr1 170234677 170234702 -111958962 + AT_rich Low_complexity Low_complexity 1 25 0 306 207 41 4 chr1 170234918 170234992 -111958672 - LTR67 LTR ERVL 0 557 452 893 243 125 65 chr1 170234993 170235409 -111958255 + MLT1H LTR MaLR 1 441 -108 268 98 20 59 chr1 170235401 170235452 -111958212 + MLT1H LTR MaLR 545 593 -2 * 1733 171 3 7 chr1 170235852 170236161 -111957503 - AluJo SINE Alu -4 308 1 293 231 103 0 chr1 170236223 170236301 -111957363 + L2 LINE L2 3227 3312 -1 231 98 16 66 chr1 170237720 170237781 -111955883 + (TTTTTA)n Simple_repeat Simple_repeat 4 61 0 2197 132 0 0 chr1 170237816 170238111 -111955553 + AluSx SINE Alu 3 297 -15 4263 85 40 9 chr1 170239136 170239713 -111953951 - LTR61 LTR ERV1 0 595 1 1748 146 33 0 chr1 170239734 170240061 -111953603 - AluJb SINE Alu 0 336 1 540 200 89 104 chr1 170240084 170240354 -111953310 + L1M4 LINE L1 4375 4640 -1506 1417 284 114 14 chr1 170240367 170240952 -111952712 + L2 LINE L2 2025 2668 -646 2093 161 22 68 chr1 170242832 170243241 -111950423 + MLT1B LTR MaLR 1 390 0 218 272 337 0 chr1 170243295 170243387 -111950277 - MIR3 SINE MIR -16 192 70 439 304 47 18 chr1 170244772 170244943 -111948721 + MER5A DNA MER1_type 1 176 -13 749 209 166 54 chr1 170244994 170245344 -111948320 + L2 LINE L2 2158 2546 -768 25 0 0 0 chr1 170245397 170245422 -111948242 + AT_rich Low_complexity Low_complexity 1 25 0 305 207 41 4 chr1 170245638 170245712 -111947952 - LTR67 LTR ERVL 0 557 452 898 243 125 65 chr1 170245713 170246129 -111947535 + MLT1H LTR MaLR 1 441 -108 267 98 20 59 chr1 170246121 170246172 -111947492 + MLT1H LTR MaLR 545 593 -2 * 1750 171 3 7 chr1 170246572 170246881 -111946783 - AluJo SINE Alu -4 308 1 268 231 103 0 chr1 170246943 170247021 -111946643 + L2 LINE L2 3227 3312 -1 231 98 16 66 chr1 170248440 170248501 -111945163 + (TTTTTA)n Simple_repeat Simple_repeat 4 61 0 2426 99 0 6 chr1 170248536 170248848 -111944816 + AluSx SINE Alu 3 312 0 581 188 188 0 chr1 170248904 170249058 -111944606 + MIR SINE MIR 68 250 -12 378 218 109 18 chr1 170249079 170249189 -111944475 + L2 LINE L2 3185 3304 -9 192 158 0 0 chr1 170249381 170249419 -111944245 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1796 166 7 0 chr1 170249426 170249710 -111943954 - AluJb SINE Alu -24 288 3 256 177 152 13 chr1 170249714 170249793 -111943871 + MIR SINE MIR 124 213 -49 1816 161 0 13 chr1 170250912 170251216 -111942448 - AluJo SINE Alu -12 300 1 2172 113 7 0 chr1 170251806 170252098 -111941566 + AluSp SINE Alu 1 294 -19 1874 134 8 4 chr1 170252123 170252426 -111941238 + AluSx SINE Alu 16 319 0 1144 138 17 0 chr1 170252446 170252620 -111941044 + FRAM SINE Alu 1 174 -2 216 0 0 0 chr1 170253012 170253036 -111940628 + (CA)n Simple_repeat Simple_repeat 2 25 0 757 226 95 27 chr1 170253358 170253579 -111940085 + MIR SINE MIR 19 254 -8 261 83 0 0 chr1 170253836 170253872 -111939792 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 0 chr1 170254139 170254164 -111939500 + AT_rich Low_complexity Low_complexity 1 25 0 1605 167 20 43 chr1 170254960 170255265 -111938399 - AluJb SINE Alu -13 299 2 2200 117 0 3 chr1 170255916 170256216 -111937448 - AluSx SINE Alu -13 299 1 315 267 47 17 chr1 170256418 170256590 -111937074 - L1ME3A LINE L1 -209 5961 5785 1835 150 3 3 chr1 170258000 170258293 -111935371 + AluJb SINE Alu 6 298 -14 2341 93 10 0 chr1 170258426 170258727 -111934937 + AluSx SINE Alu 1 304 -8 2015 108 29 39 chr1 170258736 170259043 -111934621 + AluSq SINE Alu 1 304 -9 739 117 0 0 chr1 170259133 170259236 -111934428 - AluSx SINE Alu -11 301 199 754 120 19 0 chr1 170259237 170259345 -111934319 - AluSx SINE Alu -202 111 2 15495 113 36 20 chr1 170259365 170260304 -111933360 + Tigger1 DNA MER2_type 2 925 -1493 2600 67 3 0 chr1 170260304 170260616 -111933048 - AluSp SINE Alu 0 313 1 1677 151 85 0 chr1 170260625 170260896 -111932768 - AluSq SINE Alu -18 295 2 15495 113 36 20 chr1 170260896 170262121 -111931543 + Tigger1 DNA MER2_type 932 2219 -199 1779 166 3 17 chr1 170262121 170262423 -111931241 - AluJb SINE Alu -14 298 1 15495 113 36 20 chr1 170262423 170262627 -111931037 + Tigger1 DNA MER2_type 2219 2418 0 1910 107 76 0 chr1 170263500 170263803 -111929861 - AluSq SINE Alu 0 323 1 180 77 0 0 chr1 170264560 170264586 -111929078 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 547 244 35 0 chr1 170264589 170264704 -111928960 - L2 LINE L2 -9 3263 3145 1250 185 24 4 chr1 170264790 170265039 -111928625 + MER33 DNA MER1_type 1 254 -70 2335 104 0 0 chr1 170265054 170265351 -111928313 + AluSx SINE Alu 4 300 -12 1123 88 7 0 chr1 170265360 170265497 -111928167 + AluSq/x SINE Alu 3 140 -172 2232 122 3 3 chr1 170265501 170265813 -111927851 + AluSx SINE Alu 1 312 0 261 264 66 28 chr1 170265820 170265926 -111927738 + L2 LINE L2 3204 3313 0 2120 96 0 28 chr1 170266215 170266529 -111927135 + AluSp SINE Alu 1 306 0 1886 153 14 0 chr1 170266537 170266825 -111926839 + AluJo SINE Alu 5 296 -16 198 270 11 79 chr1 170266846 170266935 -111926729 - MIR SINE MIR -128 134 52 419 170 53 0 chr1 170267354 170267448 -111926216 - L1MB2 LINE L1 -4 6167 6069 348 246 0 0 chr1 170267453 170267522 -111926142 - FRAM/FAM SINE Alu -90 76 8 1067 135 37 40 chr1 170267522 170267729 -111925935 - L1M3 LINE L1 -387 5775 5566 27 62 0 0 chr1 170268163 170268211 -111925453 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr1 170268466 170268502 -111925162 + AT_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chr1 170275044 170275071 -111918593 + (T)n Simple_repeat Simple_repeat 1 27 0 491 248 58 0 chr1 170275494 170275615 -111918049 - MIR3 SINE MIR -51 157 30 539 298 26 5 chr1 170275725 170275916 -111917748 - MIR SINE MIR -1 261 67 396 193 138 9 chr1 170275925 170276034 -111917630 - L2 LINE L2 0 3313 3191 197 318 12 12 chr1 170276052 170276137 -111917527 + MIR SINE MIR 20 104 -158 643 285 51 4 chr1 170276239 170276474 -111917190 + MIR SINE MIR 2 247 -15 220 224 0 0 chr1 170276636 170276685 -111916979 + MIR SINE MIR 89 137 -71 1393 157 73 82 chr1 170277112 170277455 -111916209 + MER2 DNA MER2_type 2 341 -3 22 0 0 0 chr1 170277843 170277865 -111915799 + AT_rich Low_complexity Low_complexity 1 22 0 2768 152 31 2 chr1 170279112 170279594 -111914070 - L1MB3 LINE L1 0 6183 5688 1508 157 0 0 chr1 170279605 170279834 -111913830 - AluJb SINE Alu 0 312 84 669 207 33 0 chr1 170280027 170280177 -111913487 - L1MA10 LINE L1 -3 6331 6177 1474 166 3 76 chr1 170280205 170280352 -111913312 + AluJo SINE Alu 1 118 -194 2171 108 21 0 chr1 170280352 170280638 -111913026 + AluSq SINE Alu 1 292 -21 1474 166 3 76 chr1 170280638 170280780 -111912884 + AluJo SINE Alu 118 269 -43 2286 120 3 0 chr1 170281075 170281384 -111912280 + AluSx SINE Alu 1 310 -2 503 323 65 30 chr1 170281686 170281918 -111911746 - MIR SINE MIR -2 260 21 1823 114 4 0 chr1 170282001 170282256 -111911408 + AluSp SINE Alu 56 311 -2 369 301 66 0 chr1 170282488 170282624 -111911040 + MIR SINE MIR 20 164 -98 215 235 0 0 chr1 170282750 170282784 -111910880 + A-rich Low_complexity Low_complexity 1 34 0 205 191 0 0 chr1 170283714 170283756 -111909908 + T-rich Low_complexity Low_complexity 1 42 0 305 290 69 44 chr1 170284291 170284449 -111909215 + MIR3 SINE MIR 3 153 -66 804 250 59 0 chr1 170284475 170284679 -111908985 - MIR SINE MIR -1 261 46 287 263 30 30 chr1 170284828 170284927 -111908737 + MIR3 SINE MIR 103 201 -7 2266 102 0 13 chr1 170284950 170285255 -111908409 + AluSx SINE Alu 1 301 -11 199 354 25 0 chr1 170286216 170286295 -111907369 + MIR3 SINE MIR 77 157 -51 199 266 62 106 chr1 170287844 170287872 -111905792 - L2 LINE L2 -19 3294 3266 2336 102 0 0 chr1 170287872 170288166 -111905498 - AluSg SINE Alu -16 294 1 199 266 62 106 chr1 170288166 170288250 -111905414 - L2 LINE L2 -47 3266 3187 2262 116 124 21 chr1 170288252 170288640 -111905024 - MSTC LTR MaLR 0 428 1 2755 169 48 40 chr1 170288885 170289454 -111904210 - L1MD1 LINE L1 0 6242 5670 745 192 0 8 chr1 170289479 170289609 -111904055 + FLAM_A SINE Alu 1 129 -4 226 258 11 34 chr1 170289725 170289814 -111903850 + MIR SINE MIR 116 202 -60 1430 105 0 0 chr1 170289818 170289999 -111903665 - AluSx SINE Alu -131 181 1 463 283 97 62 chr1 170290038 170290195 -111903469 - L1MD1 LINE L1 -832 5314 5164 1961 169 0 7 chr1 170290195 170290502 -111903162 + AluJb SINE Alu 3 307 -5 463 283 97 62 chr1 170290502 170290810 -111902854 - L1MD1 LINE L1 -982 5164 4833 253 290 65 28 chr1 170291677 170291784 -111901880 + L2 LINE L2 3156 3266 -6 217 333 49 40 chr1 170292276 170292501 -111901163 - L2 LINE L2 -800 2514 2288 383 272 39 36 chr1 170293361 170293549 -111900115 + MIR SINE MIR 16 203 -59 462 290 145 0 chr1 170294088 170294219 -111899445 + L2 LINE L2 3123 3272 0 406 282 38 8 chr1 170294935 170295066 -111898598 + MIR SINE MIR 2 136 -126 456 19 0 0 chr1 170296850 170296903 -111896761 + (CA)n Simple_repeat Simple_repeat 2 54 0 183 100 0 0 chr1 170297427 170297457 -111896207 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 456 243 19 0 chr1 170297459 170297562 -111896102 - L2 LINE L2 -8 3305 3201 2565 68 0 3 chr1 170297565 170297876 -111895788 - AluSg SINE Alu 0 310 1 1893 177 0 0 chr1 170298491 170298791 -111894873 - AluSx SINE Alu -12 300 1 2124 119 11 0 chr1 170299459 170299744 -111893920 - AluSx SINE Alu -24 288 1 377 255 21 12 chr1 170299756 170299866 -111893798 - MIR SINE MIR -63 145 45 459 242 25 32 chr1 170299867 170299883 -111893781 - L1MA10 LINE L1 0 6334 6319 808 222 11 26 chr1 170299883 170300072 -111893592 - L1ME1 LINE L1 -5 6161 5976 216 273 15 30 chr1 170300274 170300340 -111893324 + L3b LINE CR1 1422 1486 -97 509 311 24 6 chr1 170302389 170302556 -111891108 - L3b LINE CR1 -95 1488 1319 776 153 0 23 chr1 170303815 170303946 -111889718 - FLAM_A SINE Alu -5 137 10 1495 81 5 63 chr1 170303987 170304209 -111889455 + AluSg/x SINE Alu 85 293 -19 27 29 0 0 chr1 170304553 170304587 -111889077 + AT_rich Low_complexity Low_complexity 1 34 0 344 260 48 39 chr1 170304831 170304935 -111888729 + L2 LINE L2 3184 3288 -25 334 286 14 43 chr1 170305240 170305380 -111888284 - MIR SINE MIR 0 262 127 2138 136 0 3 chr1 170306347 170306649 -111887015 - AluSx SINE Alu -11 301 1 2438 82 0 7 chr1 170306874 170307180 -111886484 + AluSg SINE Alu 1 304 -6 496 219 96 27 chr1 170307566 170307712 -111885952 - MIR SINE MIR -87 175 20 1902 145 0 31 chr1 170307801 170308118 -111885546 + AluJo SINE Alu 6 312 0 25 0 0 0 chr1 170308764 170308789 -111884875 + AT_rich Low_complexity Low_complexity 1 25 0 366 23 0 0 chr1 170308802 170308845 -111884819 + (TG)n Simple_repeat Simple_repeat 2 44 0 318 376 51 0 chr1 170309463 170309620 -111884044 - L2 LINE L2 0 3272 3108 2301 77 28 0 chr1 170311164 170311451 -111882213 - AluSx SINE Alu -16 296 2 503 304 47 5 chr1 170312966 170313157 -111880507 + MIR SINE MIR 47 245 -17 244 140 60 0 chr1 170314504 170314554 -111879110 - MIR SINE MIR -126 136 84 288 284 167 0 chr1 170315465 170315567 -111878097 - L2 LINE L2 0 3272 3154 1319 247 150 25 chr1 170315633 170316138 -111877526 + L2 LINE L2 2492 3135 -178 4206 65 0 4 chr1 170316138 170316646 -111877018 + L1PA7 LINE L1 5649 6154 0 1319 247 150 25 chr1 170316646 170316851 -111876813 + L2 LINE L2 3135 3313 0 445 328 60 16 chr1 170317053 170317236 -111876428 - MIR3 SINE MIR -1 207 17 2264 119 0 0 chr1 170318594 170318906 -111874758 - AluSx SINE Alu 0 312 1 209 194 0 0 chr1 170319151 170319187 -111874477 + CT-rich Low_complexity Low_complexity 4 39 0 863 180 18 24 chr1 170320248 170320415 -111873249 + MSTD LTR MaLR 176 341 -55 1702 63 0 60 chr1 170320415 170320725 -111872939 - AluY SINE Alu 0 369 75 326 200 15 0 chr1 170320728 170320793 -111872871 + MSTD LTR MaLR 330 395 -1 360 43 0 0 chr1 170321091 170321137 -111872527 + (T)n Simple_repeat Simple_repeat 1 46 0 351 200 30 30 chr1 170321146 170321246 -111872418 - L1MC5 LINE L1 -55 7906 7807 766 194 82 133 chr1 170321266 170321679 -111871985 - L1MC4 LINE L1 -884 7077 6686 303 306 93 9 chr1 170323867 170323975 -111869689 - L2 LINE L2 -5 3267 3151 210 238 0 0 chr1 170324054 170324096 -111869568 - L2 LINE L2 -557 2757 2716 1149 180 0 26 chr1 170324105 170324333 -111869331 - AluJo SINE Alu -6 306 85 674 194 23 16 chr1 170324333 170324462 -111869202 - AluJb SINE Alu -62 250 121 1030 268 86 51 chr1 170324535 170324680 -111868984 - L2 LINE L2 -12 3301 3162 344 22 0 22 chr1 170324680 170324726 -111868938 + (TA)n Simple_repeat Simple_repeat 1 45 0 1030 268 86 51 chr1 170324726 170325115 -111868549 - L2 LINE L2 -151 3162 2721 1191 206 27 5 chr1 170325115 170325334 -111868330 + MER58A DNA MER1_type 1 224 0 1030 268 86 51 chr1 170325334 170325410 -111868254 - L2 LINE L2 -592 2721 2649 235 288 114 54 chr1 170325760 170325944 -111867720 - L2 LINE L2 -897 2417 2223 1993 133 3 14 chr1 170326288 170326582 -111867082 - AluJo SINE Alu -9 303 13 58 28 0 0 chr1 170326694 170326766 -111866898 + AT_rich Low_complexity Low_complexity 1 72 0 23 33 0 0 chr1 170327320 170327350 -111866314 + AT_rich Low_complexity Low_complexity 1 30 0 968 254 30 30 chr1 170327420 170327754 -111865910 - L1MC4a LINE L1 -1782 6026 5693 249 251 129 99 chr1 170329134 170329305 -111864359 + MIR SINE MIR 32 207 -55 802 267 71 37 chr1 170330276 170330598 -111863066 + MLT1I LTR MaLR 72 404 -5 615 176 136 28 chr1 170330607 170330783 -111862881 - L2 LINE L2 -6 3307 3113 437 222 74 0 chr1 170332954 170333062 -111860602 - MIR3 SINE MIR -5 203 88 2300 96 3 0 chr1 170333194 170333495 -111860169 - AluSp SINE Alu -11 302 1 231 335 69 17 chr1 170333503 170333676 -111859988 + MLT1J LTR MaLR 247 428 -83 2684 33 0 0 chr1 170333919 170334221 -111859443 - AluY SINE Alu -9 302 1 283 328 111 12 chr1 170334490 170334734 -111858930 + L1MC4a LINE L1 1267 1534 -4889 309 314 84 26 chr1 170334802 170334993 -111858671 + HAL1 LINE L1 1465 1666 -841 303 298 44 61 chr1 170334982 170335022 -111858642 + HAL1b LINE L1 668 707 -641 * 333 0 0 0 chr1 170335022 170335059 -111858605 + (TA)n Simple_repeat Simple_repeat 1 37 0 2862 60 19 19 chr1 170335064 170335434 -111858230 - L1PA5 LINE L1 0 6154 5785 303 298 44 61 chr1 170335434 170335568 -111858096 + HAL1b LINE L1 711 845 -503 356 320 24 40 chr1 170335746 170335993 -111857671 + L1MC4a LINE L1 2879 3121 -4001 1902 225 49 6 chr1 170335996 170336463 -111857201 + L1ME3A LINE L1 5679 6165 -5 619 273 111 44 chr1 170336666 170337190 -111856474 + L1MC4a LINE L1 5577 6135 -806 850 269 98 32 chr1 170337357 170337703 -111855961 + L1MC4a LINE L1 6309 6677 -1926 350 235 61 17 chr1 170338005 170338120 -111855544 - MER20B DNA MER1_type -626 157 38 2121 123 16 7 chr1 170338468 170338777 -111854887 + AluSx SINE Alu 1 312 0 2079 133 7 0 chr1 170339386 170339694 -111853970 - AluSx SINE Alu -1 311 2 323 173 62 0 chr1 170339934 170340015 -111853649 - L1ME4a LINE L1 -3 6118 6033 1879 103 0 0 chr1 170341079 170341321 -111852343 + AluSg SINE Alu 60 301 -9 1717 176 3 26 chr1 170341329 170341636 -111852028 + AluJo SINE Alu 1 300 -12 194 135 0 27 chr1 170342035 170342072 -111851592 + L2 LINE L2 3270 3305 -8 22 0 0 0 chr1 170342578 170342600 -111851064 + AT_rich Low_complexity Low_complexity 1 22 0 2340 88 0 7 chr1 170342600 170342897 -111850767 - AluSc SINE Alu -14 295 1 1722 84 0 0 chr1 170343949 170344163 -111849501 - AluSp SINE Alu -12 301 88 1830 122 32 55 chr1 170344673 170344984 -111848680 + AluSx SINE Alu 1 304 -8 213 39 0 0 chr1 170345056 170345082 -111848582 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 831 214 62 161 chr1 170345087 170345329 -111848335 - L2 LINE L2 -11 3302 3138 1838 134 0 56 chr1 170345329 170345650 -111848014 - AluJo SINE Alu -9 303 1 831 214 62 161 chr1 170345650 170345935 -111847729 - L2 LINE L2 -175 3138 2827 1899 136 16 26 chr1 170346412 170346721 -111846943 - AluJo SINE Alu -6 306 1 719 194 23 0 chr1 170347117 170347246 -111846418 - FLAM_A SINE Alu -1 132 1 698 262 19 60 chr1 170347334 170347601 -111846063 - MER112 DNA MER1_type 0 256 1 288 326 63 0 chr1 170348056 170348151 -111845513 - L2 LINE L2 -38 3234 3134 1723 133 108 7 chr1 170348551 170348830 -111844834 + AluSg SINE Alu 1 307 -3 857 57 0 0 chr1 170348832 170348938 -111844726 + AluY SINE Alu 200 305 -6 2149 125 0 7 chr1 170350402 170350699 -111842965 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr1 170350956 170350979 -111842685 + AT_rich Low_complexity Low_complexity 1 23 0 1987 133 7 3 chr1 170351459 170351761 -111841903 - AluSx SINE Alu -9 303 1 1893 159 7 0 chr1 170352689 170352978 -111840686 - AluSx SINE Alu -21 291 1 457 200 0 0 chr1 170353369 170353469 -111840195 - HAL1b LINE L1 0 1348 1249 2073 255 198 15 chr1 170353479 170354984 -111838680 - L2 LINE L2 0 3313 1518 2045 252 97 44 chr1 170355061 170356001 -111837663 - HAL1b LINE L1 -154 1194 205 699 215 75 33 chr1 170356072 170356174 -111837490 - L1MC5 LINE L1 -36 7925 7829 2856 3 0 0 chr1 170356174 170356475 -111837189 - AluYa5 SINE Alu -10 301 1 699 215 75 33 chr1 170356475 170356586 -111837078 - L1MC5 LINE L1 -132 7829 7703 2501 46 0 20 chr1 170356588 170356892 -111836772 - AluY SINE Alu -13 298 1 559 181 181 0 chr1 170357386 170357519 -111836145 - MER112 DNA MER1_type -10 250 94 198 103 0 0 chr1 170357523 170357552 -111836112 + (TG)n Simple_repeat Simple_repeat 2 30 0 2173 121 16 0 chr1 170357680 170357985 -111835679 + AluSx SINE Alu 1 310 -2 809 200 53 42 chr1 170357988 170358228 -111835436 - MIR SINE MIR -13 249 7 423 229 43 57 chr1 170358508 170358648 -111835016 + MIR SINE MIR 13 150 -112 611 332 20 4 chr1 170358659 170358903 -111834761 - MIR SINE MIR -14 248 1 240 198 0 99 chr1 170358917 170359008 -111834656 + MIR SINE MIR 169 250 -12 192 269 0 19 chr1 170359229 170359281 -111834383 + L2 LINE L2 3199 3249 -23 282 289 144 50 chr1 170359945 170360222 -111833442 + L2 LINE L2 2067 2369 -945 201 227 0 23 chr1 170362405 170362449 -111831215 + CT-rich Low_complexity Low_complexity 2 44 0 220 333 0 52 chr1 170362455 170362525 -111831139 - L2 LINE L2 -24 3289 3224 2250 123 0 3 chr1 170362525 170362835 -111830829 - AluSg SINE Alu -1 309 1 220 333 0 52 chr1 170362835 170362860 -111830804 - L2 LINE L2 -89 3224 3199 798 182 0 0 chr1 170363216 170363348 -111830316 - FLAM_C SINE Alu -1 132 1 558 257 98 16 chr1 170363352 170363535 -111830129 - MLT1K LTR MaLR -46 542 345 1680 176 3 7 chr1 170363754 170364043 -111829621 - AluJb SINE Alu -24 288 1 402 311 25 0 chr1 170364425 170364544 -111829120 + MIR SINE MIR 16 137 -71 531 135 15 68 chr1 170365801 170365934 -111827730 - L1MB8 LINE L1 0 6178 6053 300 274 42 0 chr1 170366283 170366378 -111827286 + L2 LINE L2 3171 3269 -3 398 161 15 44 chr1 170367095 170367232 -111826432 + CT-rich Low_complexity Low_complexity 2 134 0 325 276 45 8 chr1 170367740 170367874 -111825790 + MIR SINE MIR 78 216 -46 2390 75 0 10 chr1 170368329 170368634 -111825030 - AluY SINE Alu -8 303 2 448 259 161 0 chr1 170370089 170370232 -111823432 + MIR SINE MIR 19 184 -78 721 224 92 44 chr1 170370982 170371164 -111822500 - MIR SINE MIR 0 262 90 435 19 0 0 chr1 170371164 170371216 -111822448 + (TC)n Simple_repeat Simple_repeat 1 52 0 231 61 0 0 chr1 170371215 170371248 -111822416 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 721 224 92 44 chr1 170371216 170371315 -111822349 - MIR SINE MIR -172 90 1 214 321 18 0 chr1 170371438 170371494 -111822170 + L2 LINE L2 2566 2622 -692 823 229 0 17 chr1 170371513 170371692 -111821972 + MER5B DNA MER1_type 1 176 -2 1557 110 50 0 chr1 170371701 170371920 -111821744 + MER30 DNA MER1_type 1 230 0 1827 151 0 37 chr1 170372068 170372367 -111821297 - AluJo SINE Alu -24 288 1 278 218 128 0 chr1 170372384 170372462 -111821202 + MER5A DNA MER1_type 10 97 -92 325 330 92 44 chr1 170372714 170372987 -111820677 + L2 LINE L2 2987 3272 0 7233 144 37 129 chr1 170373453 170375323 -111818341 - pTR5 LTR ERV1 0 2438 740 1720 172 24 0 chr1 170376191 170376482 -111817182 + AluJo SINE Alu 1 298 -14 216 0 0 0 chr1 170376761 170376785 -111816879 + (A)n Simple_repeat Simple_repeat 1 24 0 288 129 171 57 chr1 170377446 170377516 -111816148 - MER116 DNA Mariner 0 80 3 1077 277 135 41 chr1 170377603 170378145 -111815519 - Tigger8 DNA MER2_type -8 658 66 1340 245 172 21 chr1 170378152 170378588 -111815076 - MLT1J LTR MaLR -7 504 3 295 230 122 0 chr1 170378715 170378789 -111814875 + Tigger8 DNA MER2_type 267 349 -317 245 336 82 36 chr1 170378928 170379208 -111814456 - L2 LINE L2 -462 2852 2560 2290 93 3 16 chr1 170381399 170381749 -111811915 - AluSp SINE Alu 0 313 1 598 289 60 4 chr1 170383058 170383293 -111810371 + MIR SINE MIR 14 261 -1 842 233 62 29 chr1 170383352 170383592 -111810072 + MIR SINE MIR 15 262 0 2664 132 29 5 chr1 170385843 170386259 -111807405 - MSTB LTR MaLR 0 426 1 2587 56 0 0 chr1 170386447 170386749 -111806915 + AluY SINE Alu 2 303 -8 2255 112 0 6 chr1 170387112 170387425 -111806239 - AluSx SINE Alu -1 311 1 213 369 0 0 chr1 170387525 170387609 -111806055 - L2 LINE L2 0 3272 3189 7485 193 45 43 chr1 170388007 170389608 -111804056 - L1MC4 LINE L1 -5 8037 6441 2428 70 0 22 chr1 170389608 170389921 -111803743 + AluY SINE Alu 1 306 -5 7485 193 45 43 chr1 170389921 170390051 -111803613 - L1MC4 LINE L1 -1601 6441 6299 1469 216 100 39 chr1 170390051 170390482 -111803182 - MSTB2 LTR MaLR 0 457 1 7485 193 45 43 chr1 170390482 170390559 -111803105 - L1MC4 LINE L1 -1743 6299 6224 219 69 0 0 chr1 170392331 170392360 -111801304 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 577 215 39 127 chr1 170392505 170392653 -111801011 + MER112 DNA MER1_type 1 114 -146 1925 173 0 3 chr1 170392653 170392960 -111800704 - AluSx SINE Alu -4 308 3 577 215 39 127 chr1 170392960 170393095 -111800569 + MER112 DNA MER1_type 114 259 -1 343 291 55 36 chr1 170393099 170393264 -111800400 - MER5A DNA MER1_type 0 189 22 593 186 127 54 chr1 170393882 170394051 -111799613 + MIR3 SINE MIR 19 201 -7 881 209 0 19 chr1 170394193 170394351 -111799313 + FRAM SINE Alu 1 155 -11 2455 70 3 3 chr1 170394356 170394655 -111799009 + AluSp SINE Alu 1 299 -14 287 25 25 0 chr1 170394968 170395008 -111798656 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 38583 30 25 2 chr1 170395127 170400572 -111793092 - L1PA2 LINE L1 0 6155 578 807 21 10 0 chr1 170400539 170400636 -111793028 - L1PA2 LINE L1 -6048 98 1 * 955 170 88 0 chr1 170400856 170401015 -111792649 - FAM SINE Alu -2 173 1 364 232 32 53 chr1 170401033 170401128 -111792536 - MIR SINE MIR -71 137 45 334 150 0 17 chr1 170402913 170402973 -111790691 + L2 LINE L2 3255 3313 0 196 308 0 0 chr1 170403306 170403358 -111790306 - L2 LINE L2 -6 3307 3256 185 250 67 77 chr1 170407022 170407104 -111786560 + MIR SINE MIR 146 228 -34 2100 118 10 3 chr1 170407104 170407401 -111786263 - AluSx SINE Alu -2 310 12 185 250 67 77 chr1 170407401 170407422 -111786242 + MIR SINE MIR 228 248 -14 601 298 22 44 chr1 170408669 170408897 -111784767 + MIR SINE MIR 13 235 -27 2389 101 0 0 chr1 170409040 170409348 -111784316 + AluSx SINE Alu 1 308 -4 521 225 26 104 chr1 170409716 170409947 -111783717 + MIR SINE MIR 37 249 -13 901 132 0 22 chr1 170410408 170410544 -111783120 + L1PA15 LINE L1 6032 6164 -1 1637 176 22 31 chr1 170412335 170412653 -111781011 - L1ME3A LINE L1 -34 6136 5822 1488 213 4 0 chr1 170412849 170413126 -111780538 + AluJo SINE Alu 1 278 -34 523 118 0 0 chr1 170413128 170413196 -111780468 + AluJo/FRAM SINE Alu 211 278 -34 607 128 0 0 chr1 170413199 170413285 -111780379 + AluJo/FRAM SINE Alu 212 297 -15 439 272 66 0 chr1 170413553 170413689 -111779975 + MIR3 SINE MIR 61 205 -3 580 272 19 19 chr1 170414140 170414302 -111779362 - MIR SINE MIR 0 262 101 1840 142 19 58 chr1 170414302 170414627 -111779037 + AluJo SINE Alu 1 312 0 2050 137 3 0 chr1 170414640 170414933 -111778731 + AluSx SINE Alu 1 294 -18 1922 208 43 29 chr1 170416187 170416830 -111776834 + L1ME1 LINE L1 5055 5708 -458 2092 180 31 74 chr1 170416830 170417346 -111776318 + MLT1D LTR MaLR 1 494 -11 1455 193 45 88 chr1 170417348 170417844 -111775820 + L1ME1 LINE L1 5705 6333 -1 242 271 17 0 chr1 170417846 170417905 -111775759 + MER5B DNA MER1_type 57 116 -62 1109 191 35 23 chr1 170419785 170420042 -111773622 - L1ME3A LINE L1 -5 6165 5906 333 198 43 78 chr1 170420036 170420152 -111773512 - L1MCa LINE L1 -4777 1440 1329 * 315 0 0 0 chr1 170420162 170420197 -111773467 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 673 209 34 47 chr1 170420201 170420349 -111773315 - FRAM SINE Alu -30 146 1 292 248 119 39 chr1 170420529 170420728 -111772936 - L1MCa LINE L1 -5061 1335 939 1800 115 0 0 chr1 170420728 170420962 -111772702 + AluSx SINE Alu 1 234 -78 801 101 0 0 chr1 170420962 170421108 -111772556 + AluSg/x SINE Alu 187 332 0 1420 197 35 0 chr1 170421178 170421437 -111772227 - AluJo SINE Alu -3 309 42 422 319 96 15 chr1 170421473 170421733 -111771931 - L1MCa LINE L1 -5460 936 656 350 219 16 0 chr1 170421888 170421952 -111771712 + MER81 DNA DNA 1 65 -49 420 152 11 104 chr1 170421952 170422062 -111771602 - L1M3 LINE L1 -397 5771 5672 368 156 23 39 chr1 170422120 170422248 -111771416 + CT-rich Low_complexity Low_complexity 2 127 0 301 292 113 15 chr1 170422443 170422741 -111770923 - L1MC4 LINE L1 -293 7749 7312 2093 137 0 0 chr1 170423072 170423387 -111770277 + AluSx SINE Alu 1 312 0 837 243 50 38 chr1 170423574 170423813 -111769851 - MIR SINE MIR -19 243 2 183 162 0 0 chr1 170424262 170424299 -111769365 + T-rich Low_complexity Low_complexity 1 37 0 306 181 206 26 chr1 170424730 170424885 -111768779 - L1ME4a LINE L1 -113 6008 5826 2099 109 13 13 chr1 170424973 170425275 -111768389 - AluSx SINE Alu -10 302 1 194 378 161 4 chr1 170426628 170426858 -111766806 - L2 LINE L2 -483 2831 2566 1578 257 117 17 chr1 170426969 170427814 -111765850 - L2 LINE L2 0 3313 2382 446 273 87 13 chr1 170427805 170427955 -111765709 - MIR3 SINE MIR -28 180 20 * 22 0 0 0 chr1 170428822 170428844 -111764820 + AT_rich Low_complexity Low_complexity 1 22 0 288 214 95 0 chr1 170429716 170429800 -111763864 + MIR3 SINE MIR 108 199 -9 226 376 77 17 chr1 170429934 170430051 -111763613 - L2 LINE L2 -49 3223 3100 2206 199 103 76 chr1 170430370 170431067 -111762597 - L1MC4a LINE L1 0 7808 7093 203 340 191 0 chr1 170431069 170431216 -111762448 - L2 LINE L2 -587 2727 2553 2353 99 7 0 chr1 170431365 170431669 -111761995 - AluSq SINE Alu -7 306 1 1391 189 19 7 chr1 170432648 170432918 -111760746 - AluJb SINE Alu -37 275 3 278 177 152 13 chr1 170432922 170433001 -111760663 + MIR SINE MIR 124 213 -49 1792 161 0 13 chr1 170434117 170434421 -111759243 - AluJo SINE Alu -12 300 1 185 299 194 50 chr1 170434463 170434664 -111759000 + L2 LINE L2 2890 3119 -153 2156 113 7 0 chr1 170435011 170435303 -111758361 + AluSp SINE Alu 1 294 -19 2083 126 7 3 chr1 170435328 170435622 -111758042 + AluSx SINE Alu 16 310 -2 880 200 53 42 chr1 170435625 170435865 -111757799 - MIR SINE MIR -13 249 7 465 240 41 55 chr1 170436145 170436291 -111757373 + MIR SINE MIR 13 156 -106 680 332 20 4 chr1 170436296 170436540 -111757124 - MIR SINE MIR -14 248 1 285 214 0 92 chr1 170436548 170436646 -111757018 + MIR SINE MIR 162 250 -12 211 269 0 19 chr1 170436867 170436919 -111756745 + L2 LINE L2 3199 3249 -23 292 330 28 0 chr1 170488752 170488861 -111704803 + MIR3 SINE MIR 66 177 -31 216 346 63 16 chr1 170489958 170490085 -111703579 - MIR SINE MIR -109 153 21 31 68 0 0 chr1 170491087 170491146 -111702518 + AT_rich Low_complexity Low_complexity 1 59 0 410 338 98 59 chr1 170491308 170491666 -111701998 + L2 LINE L2 2895 3266 -6 26 0 0 0 chr1 170492312 170492338 -111701326 + AT_rich Low_complexity Low_complexity 1 26 0 1751 117 79 28 chr1 170494592 170494882 -111698782 - AluSq SINE Alu -8 305 1 351 297 74 0 chr1 170495263 170495411 -111698253 + MER103 DNA DNA 8 166 0 26 30 0 0 chr1 170495884 170495917 -111697747 + AT_rich Low_complexity Low_complexity 1 33 0 272 217 0 24 chr1 170498161 170498244 -111695420 + (TA)n Simple_repeat Simple_repeat 2 82 0 740 227 0 123 chr1 170498277 170498497 -111695167 - MER77 LTR ERV1 -412 193 1 405 115 0 0 chr1 170498743 170498804 -111694860 + MER41B LTR ERV1 487 547 -88 22 0 0 0 chr1 170499943 170499965 -111693699 + AT_rich Low_complexity Low_complexity 1 22 0 2861 27 3 0 chr1 170504638 170504969 -111688695 - L1PA3 LINE L1 -481 5674 5343 4746 19 0 0 chr1 170504969 170505479 -111688185 + L1PA3 LINE L1 5642 6155 0 494 313 82 13 chr1 170505714 170505947 -111687717 - MLT1L LTR MaLR -7 608 360 1849 285 144 56 chr1 170506421 170506976 -111686688 + MER4D LTR ERV1 1 604 -268 1407 158 26 59 chr1 170507028 170507301 -111686363 + AluJb SINE Alu 5 268 -44 893 174 0 0 chr1 170507302 170507446 -111686218 + MLT1A1 LTR MaLR 222 365 0 416 268 11 89 chr1 170507474 170507533 -111686131 - LTR33 LTR ERVL -3 518 456 2398 81 0 0 chr1 170507533 170507829 -111685835 - AluY SINE Alu -15 296 1 416 268 11 89 chr1 170507829 170507959 -111685705 - LTR33 LTR ERVL -65 456 344 1387 229 13 68 chr1 170507963 170508360 -111685304 - MLT1A2 LTR MaLR 0 374 5 1034 114 6 62 chr1 170508489 170508564 -111685100 + LTR24C LTR ERV1 1 79 -556 2299 113 3 3 chr1 170508564 170508874 -111684790 + AluSp SINE Alu 1 310 -3 1034 114 6 62 chr1 170508874 170508974 -111684690 + LTR24C LTR ERV1 79 166 -469 2579 114 11 114 chr1 170509076 170509306 -111684358 + LTR24C LTR ERV1 164 311 -324 2060 147 0 10 chr1 170509306 170509619 -111684045 + AluSx SINE Alu 1 310 -2 2579 114 11 114 chr1 170509619 170509914 -111683750 + LTR24C LTR ERV1 311 635 0 1009 166 36 81 chr1 170509914 170510161 -111683503 + MER31B LTR ERV1 13 248 -218 423 153 12 2 chr1 170510163 170510242 -111683422 + LTR49 LTR ERV1 11 121 -464 346 318 17 12 chr1 170510467 170510640 -111683024 - MER41B LTR ERV1 -204 431 258 725 197 61 133 chr1 170510871 170511055 -111682609 + LTR49 LTR ERV1 78 274 -321 1984 124 10 7 chr1 170511055 170511216 -111682448 - AluSx SINE Alu -19 293 134 188 86 29 0 chr1 170511216 170511251 -111682413 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2276 78 0 4 chr1 170511252 170511533 -111682131 - AluY SINE Alu -31 280 1 1984 124 10 7 chr1 170511533 170511659 -111682005 - AluSx SINE Alu -177 135 3 725 197 61 133 chr1 170511659 170511768 -111681896 + LTR49 LTR ERV1 274 350 -245 2236 96 3 20 chr1 170511844 170512146 -111681518 - AluSp SINE Alu -16 297 1 455 45 91 0 chr1 170512171 170512237 -111681427 - MLT2A2 LTR ERVL 0 453 382 1141 99 37 0 chr1 170512239 170512400 -111681264 - BC200 scRNA scRNA -33 167 1 2475 99 51 6 chr1 170512401 170512756 -111680908 - MLT2A2 LTR ERVL -59 394 24 2124 77 45 18 chr1 170513434 170513720 -111679944 - AluSx SINE Alu -18 294 1 264 59 59 0 chr1 170513844 170513895 -111679769 + (TA)n Simple_repeat Simple_repeat 1 54 0 2248 89 14 0 chr1 170513998 170514291 -111679373 - AluSx SINE Alu -7 305 9 412 295 105 16 chr1 170514511 170514701 -111678963 - Charlie4 DNA MER1_type -3 1958 1752 317 158 0 0 chr1 170514702 170514759 -111678905 + Alu SINE Alu 239 295 -6 231 280 143 0 chr1 170514903 170515078 -111678586 - HAL1 LINE L1 -1244 1263 1064 317 158 0 0 chr1 170515157 170515214 -111678450 - AluSx SINE Alu -6 296 240 370 311 105 16 chr1 170515215 170515405 -111678259 + Charlie4 DNA MER1_type 1752 1958 -3 1017 206 0 0 chr1 170515806 170515971 -111677693 + U1 snRNA snRNA 1 165 0 260 224 15 112 chr1 170516089 170516223 -111677441 + AluSq/x SINE Alu 2 122 -181 1578 108 4 87 chr1 170516320 170516597 -111677067 - AluSx SINE Alu -58 254 1 446 121 11 110 chr1 170516657 170516748 -111676916 - MER30 DNA MER1_type -148 82 1 397 303 171 11 chr1 170516993 170517168 -111676496 - MLT2F LTR ERVL -460 203 1 284 175 16 0 chr1 170517204 170517267 -111676397 + CT-rich Low_complexity Low_complexity 3 66 0 755 193 156 80 chr1 170517272 170517645 -111676019 - ERVL-F LTR ERVL -42 5722 5322 202 308 67 0 chr1 170517929 170518033 -111675631 - L2 LINE L2 -5 3308 3198 588 117 0 0 chr1 170518493 170518570 -111675094 + tRNA-Asn-AAC tRNA tRNA 1 77 0 249 324 98 0 chr1 170518886 170518988 -111674676 + MIR SINE MIR 34 145 -117 2419 90 3 0 chr1 170518989 170519301 -111674363 + AluSq SINE Alu 1 313 0 1088 220 58 52 chr1 170519312 170519676 -111673988 - HAL1 LINE L1 -599 1908 1543 1550 96 5 23 chr1 170519676 170519895 -111673769 - AluSg/x SINE Alu -19 291 77 286 295 7 86 chr1 170519899 170520038 -111673626 + LTR2 LTR ERV1 11 138 -311 303 263 183 11 chr1 170520138 170520313 -111673351 + MER90 LTR ERV1 100 304 -310 2075 113 3 21 chr1 170520322 170520613 -111673051 - AluSg SINE Alu -24 286 1 1158 125 34 0 chr1 170520615 170520791 -111672873 - AluSg/x SINE Alu -7 305 124 276 289 10 10 chr1 170520791 170520888 -111672776 + MER90 LTR ERV1 290 386 -228 * 362 245 28 38 chr1 170520883 170520989 -111672675 + MER90 LTR ERV1 505 609 -5 284 287 122 55 chr1 170520999 170521180 -111672484 - HAL1 LINE L1 -998 1509 1317 605 239 175 80 chr1 170521269 170521319 -111672345 - MLT1H LTR MaLR -16 533 489 2300 80 3 7 chr1 170521319 170521618 -111672046 + AluY SINE Alu 1 298 -13 605 239 175 80 chr1 170521618 170521990 -111671674 - MLT1H LTR MaLR -60 489 71 2327 57 4 0 chr1 170522054 170522367 -111671297 - AluY SINE Alu 0 314 1 2128 93 3 0 chr1 170522389 170522680 -111670984 - AluSc SINE Alu -17 292 1 2185 85 11 0 chr1 170522691 170523049 -111670615 - AluSq SINE Alu 0 361 1 22 0 0 0 chr1 170523171 170523193 -111670471 + AT_rich Low_complexity Low_complexity 1 22 0 1819 150 0 7 chr1 170523197 170523559 -111670105 + AluSx SINE Alu 4 363 0 2973 107 79 8 chr1 170523562 170524030 -111669634 + MER51D LTR ERV1 155 655 -2 2021 168 8 17 chr1 170524032 170524383 -111669281 + MER72 LTR ERV1 157 504 -218 242 241 0 116 chr1 170524490 170524602 -111669062 + L1PA8A LINE L1 5642 5741 -390 1158 109 32 0 chr1 170524615 170524771 -111668893 - AluSg/x SINE Alu -18 294 134 635 53 0 0 chr1 170525218 170525293 -111668371 - tRNA-Asn-AAC tRNA tRNA -2 75 1 245 298 48 0 chr1 170526238 170526342 -111667322 - L1MC/D LINE L1 -2066 5742 5634 659 279 78 4 chr1 170526374 170526875 -111666789 - L1MEc LINE L1 -4258 2138 1555 32 43 0 0 chr1 170526980 170527026 -111666638 + AT_rich Low_complexity Low_complexity 1 46 0 315 290 20 0 chr1 170528113 170528213 -111665451 - L2 LINE L2 -804 2510 2409 3476 137 32 25 chr1 170528253 170528844 -111664820 + LTR49 LTR ERV1 1 595 0 6251 137 71 51 chr1 170528846 170530032 -111663632 + LTR49-int LTR ERV1 1 1209 -5122 353 301 0 0 chr1 170530032 170530105 -111663559 + tRNA-Glu-GAG tRNA tRNA 3 75 0 482 78 39 13 chr1 170530110 170530187 -111663477 + LTR49-int LTR ERV1 1288 1366 -4965 1240 207 9 56 chr1 170530187 170530506 -111663158 - AluSx SINE Alu 0 312 9 2041 142 7 0 chr1 170530987 170531290 -111662374 - AluSx SINE Alu -7 305 1 1554 186 7 17 chr1 170532086 170532377 -111661287 + AluJo SINE Alu 1 288 -24 352 331 78 13 chr1 170534536 170534718 -111658946 - MIR3 SINE MIR -63 145 3 2005 241 90 92 chr1 170534758 170535240 -111658424 + L1MEc LINE L1 35 516 -5880 1902 144 34 79 chr1 170535240 170535593 -111658071 + MER1B DNA MER1_type 1 337 0 2005 241 90 92 chr1 170535593 170535620 -111658044 + L1MEc LINE L1 516 542 -5854 1389 144 10 0 chr1 170535620 170535821 -111657843 + L1MC1 LINE L1 6126 6328 -5 2005 241 90 92 chr1 170535821 170536242 -111657422 + L1MEc LINE L1 542 967 -5429 1911 132 0 31 chr1 170536242 170536553 -111657111 + AluSx SINE Alu 6 307 0 2005 241 90 92 chr1 170536553 170536645 -111657019 + L1MEc LINE L1 967 1058 -5338 940 35 0 0 chr1 170536642 170536756 -111656908 + L1PA3 LINE L1 4418 4531 -1615 * 8324 19 0 0 chr1 170536856 170538493 -111655171 + L1PA3 LINE L1 4518 6155 0 967 233 82 87 chr1 170538493 170539163 -111654501 + L1MEc LINE L1 971 1637 -4759 1859 168 3 0 chr1 170539239 170539536 -111654128 + AluJb SINE Alu 1 298 -14 2034 141 0 38 chr1 170540072 170540392 -111653272 - AluSx SINE Alu -4 308 1 1980 143 3 3 chr1 170540731 170541024 -111652640 + AluSx SINE Alu 1 293 -19 2230 132 124 16 chr1 170541103 170541489 -111652175 + MSTA LTR MaLR 1 428 0 213 317 89 30 chr1 170541503 170541604 -111652060 + L2 LINE L2 3151 3257 -15 * 229 294 118 37 chr1 170541603 170541739 -111651925 - L3 LINE CR1 -2 1575 1429 530 288 46 46 chr1 170542170 170542389 -111651275 - MIR SINE MIR -10 252 34 298 301 26 26 chr1 170542850 170542963 -111650701 - MIR SINE MIR -116 146 34 232 36 0 0 chr1 170542968 170542996 -111650668 + (TTTTC)n Simple_repeat Simple_repeat 3 145 0 1947 126 22 4 chr1 170542996 170543273 -111650391 - AluSx SINE Alu -30 282 1 398 278 212 15 chr1 170543545 170543743 -111649921 - MIR SINE MIR -21 241 5 206 274 97 49 chr1 170544695 170544839 -111648825 + MIR SINE MIR 45 194 -61 510 160 9 9 chr1 170545190 170545296 -111648368 + L1MB8 LINE L1 6064 6169 -9 830 196 0 14 chr1 170545956 170546104 -111647560 + AluJb SINE Alu 2 147 -165 2356 90 0 0 chr1 170546104 170546415 -111647249 + AluY SINE Alu 1 311 0 306 196 0 0 chr1 170546434 170546485 -111647179 + LTR49 LTR ERV1 263 313 -282 709 141 42 63 chr1 170546485 170546627 -111647037 + MER4-int LTR ERV1 865 1003 -5595 4718 154 83 95 chr1 170546724 170547027 -111646637 + L1MC/D LINE L1 18 323 -6061 1758 146 36 0 chr1 170547027 170547302 -111646362 + AluSx SINE Alu 1 285 -27 459 0 0 0 chr1 170547302 170547353 -111646311 + (CA)n Simple_repeat Simple_repeat 2 52 0 4718 154 83 95 chr1 170547353 170547458 -111646206 + L1MC/D LINE L1 322 427 -5957 250 140 160 0 chr1 170547458 170547508 -111646156 + MLT1J LTR MaLR 188 245 -266 4718 154 83 95 chr1 170547508 170548318 -111645346 + L1MC/D LINE L1 427 1271 -5113 1957 125 4 0 chr1 170548356 170548636 -111645028 - AluSp SINE Alu -32 281 1 1550 157 45 3 chr1 170548638 170548925 -111644739 + L1MC/D LINE L1 1257 1555 -4829 1869 194 12 0 chr1 170549029 170549179 -111644485 + L1 LINE L1 4244 4391 -1755 324 0 0 0 chr1 170549179 170549215 -111644449 + (CA)n Simple_repeat Simple_repeat 1 36 0 1869 194 12 0 chr1 170549215 170549472 -111644192 + L1 LINE L1 4391 4656 -1490 1872 164 3 3 chr1 170549472 170549784 -111643880 + AluSx SINE Alu 1 312 0 479 78 39 13 chr1 170549784 170549861 -111643803 - LTR49-int LTR ERV1 -4965 1366 1288 326 301 0 0 chr1 170549866 170549939 -111643725 - tRNA-Glu-GAG tRNA tRNA 0 75 3 6256 133 71 52 chr1 170549939 170551126 -111642538 - LTR49-int LTR ERV1 -5122 1209 1 1974 228 31 28 chr1 170551128 170551699 -111641965 - LTR49 LTR ERV1 0 595 23 325 290 20 0 chr1 170551878 170551978 -111641686 + L2 LINE L2 2409 2510 -804 32 43 0 0 chr1 170553065 170553111 -111640553 + AT_rich Low_complexity Low_complexity 1 46 0 1103 266 153 2 chr1 170553216 170553724 -111639940 + L1MC/D LINE L1 1722 2306 -4257 235 254 0 0 chr1 170553791 170553858 -111639806 + L1MC/D LINE L1 5911 5977 -2067 641 27 0 0 chr1 170554996 170555071 -111638593 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1150 120 30 0 chr1 170555573 170555740 -111637924 + AluSg/x SINE Alu 134 305 -7 1962 107 72 0 chr1 170555870 170556161 -111637503 + AluSp SINE Alu 1 312 -1 1990 179 8 20 chr1 170556265 170556617 -111637047 - MER72 LTR ERV1 -218 504 157 2144 139 54 26 chr1 170556619 170557006 -111636658 - MER51D LTR ERV1 -2 655 258 904 120 30 60 chr1 170557196 170557235 -111636429 - MER51D LTR ERV1 -463 194 155 2104 112 0 3 chr1 170557235 170557530 -111636134 - AluSx SINE Alu -18 294 1 904 120 30 60 chr1 170557530 170557690 -111635974 - MER51D LTR ERV1 -502 155 1 856 204 19 0 chr1 170557690 170557847 -111635817 - MER72 LTR ERV1 -562 160 1 * 999 134 117 0 chr1 170557847 170558011 -111635653 - LTR49 LTR ERV1 -411 184 1 1109 169 41 5 chr1 170558016 170558211 -111635453 + MER89 LTR ERV1 356 557 -2 711 184 91 75 chr1 170558229 170558545 -111635119 + MER31B LTR ERV1 1 445 -21 616 184 41 54 chr1 170558559 170558706 -111634958 + LTR8 LTR ERV1 2 146 -545 2252 112 9 18 chr1 170558709 170559049 -111634615 + MER1B DNA MER1_type 1 337 -2 2973 138 51 44 chr1 170559058 170559629 -111634035 + LTR8A LTR ERV1 153 727 0 294 354 62 4 chr1 170559645 170559888 -111633776 - HAL1 LINE L1 -1811 696 440 3288 126 29 4 chr1 170559921 170560407 -111633257 - MER41E LTR ERV1 0 512 15 180 77 0 0 chr1 170560796 170560822 -111632842 + (CAA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr1 170561606 170561627 -111632037 + (G)n Simple_repeat Simple_repeat 1 21 0 1535 0 0 0 chr1 170561703 170561867 -111631797 + U1 snRNA snRNA 1 164 -1 295 182 76 30 chr1 170562309 170562375 -111631289 - MER45B DNA AcHobo -660 380 312 331 252 93 14 chr1 170562378 170562517 -111631147 + REP3 LTR ERV 4 153 -409 2225 41 48 7 chr1 170562862 170563154 -111630510 - AluY SINE Alu -6 305 2 1622 117 28 0 chr1 170563307 170563375 -111630289 + AluSx SINE Alu 59 124 -188 237 33 0 0 chr1 170563375 170563405 -111630259 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 1622 117 28 0 chr1 170563405 170563583 -111630081 + AluSx SINE Alu 124 312 0 255 31 0 0 chr1 170563775 170563807 -111629857 + (TC)n Simple_repeat Simple_repeat 1 32 0 210 143 0 0 chr1 170564874 170564886 -111628778 + (GAAAA)n Simple_repeat Simple_repeat 4 15 -30 1258 171 96 68 chr1 170564886 170565178 -111628486 + AluJb SINE Alu 3 302 0 210 143 0 0 chr1 170565178 170565207 -111628457 + (GAAAA)n Simple_repeat Simple_repeat 14 45 0 813 70 13 32 chr1 170565319 170565476 -111628188 + SVA Other Other 641 794 -592 6130 75 10 52 chr1 170565491 170566482 -111627182 + SVA Other Other 433 1382 -4 26 64 0 0 chr1 170566515 170566562 -111627102 + AT_rich Low_complexity Low_complexity 1 47 0 720 191 23 0 chr1 170566627 170566758 -111626906 + AluJo SINE Alu 2 135 -177 1680 184 3 10 chr1 170566758 170567068 -111626596 + AluJb SINE Alu 1 308 -4 2094 119 0 13 chr1 170567151 170567463 -111626201 - AluSg SINE Alu -2 308 1 304 280 0 13 chr1 170567464 170567539 -111626125 + L1M4 LINE L1 5080 5153 -993 522 251 122 35 chr1 170567544 170567663 -111626001 + L1ME2 LINE L1 5050 5157 -1005 1712 162 3 7 chr1 170567663 170567959 -111625705 + AluJb SINE Alu 2 296 -16 522 251 122 35 chr1 170567959 170568227 -111625437 + L1ME2 LINE L1 5157 5448 -714 802 154 73 0 chr1 170568642 170568778 -111624886 - AluJb SINE Alu -164 148 3 1878 100 4 7 chr1 170569109 170569389 -111624275 - AluY SINE Alu 0 311 33 914 301 53 40 chr1 170571016 170571551 -111622113 + L2 LINE L2 2445 2990 -282 1689 168 16 16 chr1 170572027 170572337 -111621327 + AluJb SINE Alu 1 310 -2 775 239 57 2 chr1 170572426 170572685 -111620979 + L1ME2 LINE L1 5889 6161 -1 331 360 59 30 chr1 170572700 170572936 -111620728 - MIR SINE MIR -8 254 12 279 0 0 0 chr1 170572975 170573006 -111620658 + (TA)n Simple_repeat Simple_repeat 2 32 0 2083 130 3 0 chr1 170573115 170573415 -111620249 + AluSx SINE Alu 1 301 -11 597 241 0 0 chr1 170573415 170573527 -111620137 - FLAM_A SINE Alu -29 113 2 247 232 29 0 chr1 170573632 170573701 -111619963 + (TA)n Simple_repeat Simple_repeat 2 72 0 6993 50 29 0 chr1 170573804 170574779 -111618885 + L1PA5 LINE L1 5167 6152 -2 3437 108 52 25 chr1 170574779 170575336 -111618328 + MER51D LTR ERV1 86 657 0 367 213 0 27 chr1 170575397 170575472 -111618192 - tRNA-Gly-GGG tRNA tRNA -1 73 1 232 27 54 0 chr1 170575497 170575534 -111618130 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 342 194 30 0 chr1 170576332 170576399 -111617265 + tRNA-Gly-GGG tRNA tRNA 3 71 -3 195 188 0 0 chr1 170577827 170577875 -111615789 + GA-rich Low_complexity Low_complexity 1 48 0 466 251 6 18 chr1 170578414 170578577 -111615087 - U1 snRNA snRNA -1 164 4 398 197 0 0 chr1 170579625 170579696 -111613968 - tRNA-Glu-GAG tRNA tRNA -3 72 2 369 311 24 18 chr1 170580188 170580352 -111613312 + L2 LINE L2 2351 2515 -799 380 223 100 62 chr1 170580392 170580522 -111613142 - MER20 DNA MER1_type -2 217 83 1380 188 33 63 chr1 170582123 170582485 -111611179 - MLT1A1 LTR MaLR -2 363 13 241 226 19 0 chr1 170582667 170582720 -111610944 + HAL1 LINE L1 426 479 -2028 5246 112 121 41 chr1 170582721 170583805 -111609859 - MER11A LTR ERVK 0 1266 1 230 213 16 16 chr1 170583890 170583951 -111609713 + L1ME3 LINE L1 6049 6109 -53 1952 243 62 65 chr1 170583954 170584111 -111609553 + L1ME2 LINE L1 4696 4852 -1312 1316 180 97 17 chr1 170584111 170584400 -111609264 - AluJb SINE Alu 0 312 1 1952 243 62 65 chr1 170584400 170585531 -111608133 + L1ME2 LINE L1 4852 5982 -182 180 179 0 0 chr1 170585832 170585871 -111607793 + GA-rich Low_complexity Low_complexity 1 39 0 1142 246 69 27 chr1 170586099 170586653 -111607011 + L1ME LINE L1 5114 5684 -480 1745 91 66 0 chr1 170587615 170587857 -111605807 + AluSg SINE Alu 28 285 -25 29 0 0 0 chr1 170587857 170587886 -111605778 + AT_rich Low_complexity Low_complexity 1 29 0 2141 248 8 36 chr1 170587908 170588440 -111605224 + MER87 LTR ERV1 3 519 -22 585 122 0 0 chr1 170588450 170588540 -111605124 + AluJ/FRAM SINE Alu 221 310 -2 1773 123 88 0 chr1 170589334 170589618 -111604046 + AluSx SINE Alu 1 309 -3 295 209 15 0 chr1 170589651 170589718 -111603946 - MER110-int LTR ERV1 -925 5833 5766 347 191 0 0 chr1 170589737 170589800 -111603864 + FRAM/FAM SINE Alu 5 67 -99 872 66 0 25 chr1 170590069 170590191 -111603473 - AluSq/x SINE Alu -193 120 2 486 187 22 11 chr1 170590192 170590283 -111603381 + LTR56 LTR ERV1 9 100 -345 321 275 43 43 chr1 170590476 170590614 -111603050 + Charlie4 DNA MER1_type 1816 1953 -8 628 209 0 23 chr1 170591046 170591175 -111602489 + U1 snRNA snRNA 3 128 -37 924 194 189 104 chr1 170591185 170591588 -111602076 + LTR4 LTR ERV1 49 485 -111 1622 103 0 4 chr1 170591588 170591821 -111601843 + AluY SINE Alu 1 232 -79 399 89 0 0 chr1 170592069 170592125 -111601539 + (TG)n Simple_repeat Simple_repeat 1 56 0 633 205 0 0 chr1 170592125 170592242 -111601422 - FLAM_C SINE Alu -16 117 1 1121 246 62 13 chr1 170592343 170592717 -111600947 + L1MEc LINE L1 1566 1957 -4439 848 244 0 0 chr1 170593168 170593328 -111600336 + FRAM SINE Alu 4 163 -3 255 361 87 25 chr1 170593575 170593930 -111599734 - MER110-int LTR ERV1 -2094 2553 2177 2392 95 3 0 chr1 170594340 170594645 -111599019 - AluSx SINE Alu -6 306 1 1209 171 34 21 chr1 170594978 170595217 -111598447 + AluJo SINE Alu 44 285 -27 2206 126 0 0 chr1 170595606 170595908 -111597756 - AluSg SINE Alu -8 302 1 3278 176 27 34 chr1 170597362 170598038 -111595626 + LTR51 LTR ERV1 1 671 0 1442 211 24 16 chr1 170598113 170598476 -111595188 - LTR56 LTR ERV1 -1 436 97 1665 164 0 47 chr1 170598479 170598777 -111594887 + AluSx SINE Alu 1 284 -28 2005 120 3 14 chr1 170598879 170599171 -111594493 - AluSx SINE Alu -23 289 1 402 240 40 0 chr1 170599297 170599397 -111594267 - AluJo SINE Alu -20 282 179 553 240 0 0 chr1 170599407 170599528 -111594136 - AluJo SINE Alu -180 122 2 180 0 0 0 chr1 170599533 170599553 -111594111 + (A)n Simple_repeat Simple_repeat 1 20 0 1537 171 6 61 chr1 170599565 170599892 -111593772 - AluJo SINE Alu -3 309 1 2063 146 0 0 chr1 170600363 170600657 -111593007 + AluSx SINE Alu 1 294 -18 621 0 0 0 chr1 170600865 170600934 -111592730 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 207 69 0 0 chr1 170601352 170601381 -111592283 + (GA)n Simple_repeat Simple_repeat 1 29 0 1039 201 119 48 chr1 170601844 170601961 -111591703 + AluJb SINE Alu 1 108 -194 1469 126 0 5 chr1 170601961 170602168 -111591496 + AluJb SINE Alu 81 286 -26 1039 201 119 48 chr1 170602168 170602319 -111591345 + AluJb SINE Alu 108 288 -14 184 174 54 0 chr1 170602320 170602412 -111591252 + (TA)n Simple_repeat Simple_repeat 1 97 0 40 37 0 0 chr1 170602422 170602476 -111591188 + AT_rich Low_complexity Low_complexity 1 54 0 791 236 0 6 chr1 170602512 170602673 -111590991 + FRAM SINE Alu 1 157 -19 478 142 80 3 chr1 170602808 170603033 -111590631 + AluSg1 SINE Alu 1 309 -2 799 225 0 52 chr1 170603067 170603258 -111590406 + AluJo SINE Alu 1 181 -131 2030 137 23 0 chr1 170603528 170603827 -111589837 - AluJo SINE Alu -6 306 1 26 0 0 0 chr1 170603837 170603863 -111589801 + AT_rich Low_complexity Low_complexity 1 26 0 3407 218 49 20 chr1 170603935 170605020 -111588644 - L1MB7 LINE L1 -26 6158 5036 214 341 86 1 chr1 170605641 170605787 -111587877 - MIR SINE MIR -73 189 34 1416 278 96 48 chr1 170606079 170606283 -111587381 - L1ME3 LINE L1 -1 6161 5968 2520 167 12 2 chr1 170606283 170606709 -111586955 - MSTB1 LTR MaLR 0 432 3 1416 278 96 48 chr1 170606709 170606765 -111586899 - L1ME3 LINE L1 -194 5968 5916 1826 119 49 14 chr1 170606765 170607050 -111586614 + AluSx SINE Alu 1 295 -17 1416 278 96 48 chr1 170607050 170608026 -111585638 - L1ME3 LINE L1 -246 5916 4862 1971 62 0 0 chr1 170608055 170608295 -111585369 + L1PA6 LINE L1 5909 6148 -6 25 0 0 0 chr1 170608297 170608322 -111585342 + AT_rich Low_complexity Low_complexity 1 25 0 721 297 109 12 chr1 170609125 170609610 -111584054 - L1ME3 LINE L1 -1286 4860 4329 2229 261 75 15 chr1 170609628 170610082 -111583582 - L1ME1 LINE L1 -5 6659 6234 4980 80 11 14 chr1 170610082 170610743 -111582921 + PABL_A LTR ERV1 2 660 0 2229 261 75 15 chr1 170610743 170611107 -111582557 - L1ME1 LINE L1 -430 6234 5792 574 50 0 79 chr1 170611116 170611256 -111582408 + (TA)n Simple_repeat Simple_repeat 2 130 0 1980 122 0 4 chr1 170611368 170611646 -111582018 - AluSc SINE Alu -31 278 2 1653 257 127 45 chr1 170611836 170612622 -111581042 - L1ME1 LINE L1 -4258 2567 1717 441 254 111 8 chr1 170612623 170612749 -111580915 + FLAM_C SINE Alu 2 140 -3 569 232 59 44 chr1 170612758 170612992 -111580672 - L1ME1 LINE L1 -4983 1683 1330 1579 148 0 8 chr1 170612992 170613235 -111580429 - AluSc SINE Alu -68 241 1 318 50 0 0 chr1 170613236 170613276 -111580388 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1522 177 4 11 chr1 170613276 170613541 -111580123 - AluJb SINE Alu -30 282 20 266 238 0 38 chr1 170613574 170613654 -111580010 - L1ME1 LINE L1 -6302 523 447 185 310 159 0 chr1 170614747 170614860 -111578804 - L2 LINE L2 -5 3267 3137 389 335 34 0 chr1 170615741 170615920 -111577744 + MIR SINE MIR 78 262 0 498 87 0 0 chr1 170616155 170616224 -111577440 - tRNA-Glu-GAG tRNA tRNA -3 72 4 316 242 0 0 chr1 170616640 170616706 -111576958 + tRNA-Lys-AAG tRNA tRNA 2 67 -9 6083 225 53 27 chr1 170617271 170619418 -111574246 + L1MD1 LINE L1 874 3080 -3460 236 140 0 80 chr1 170619418 170619468 -111574196 + MLT1B LTR MaLR 1 46 -344 2730 178 18 36 chr1 170619470 170620100 -111573564 + L1MD1 LINE L1 5791 6408 -228 791 171 41 114 chr1 170620672 170620917 -111572747 + L1MD1 LINE L1 6410 6636 0 1145 219 7 19 chr1 170621284 170621554 -111572110 - MLT2B1 LTR ERVL -253 267 1 2737 181 88 32 chr1 170622066 170622692 -111570972 + MER67B LTR ERV1 1 661 0 382 259 84 44 chr1 170623035 170623286 -111570378 + L1ME LINE L1 5536 5796 -368 189 0 0 0 chr1 170624731 170624752 -111568912 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1053 153 109 0 chr1 170624753 170624936 -111568728 - AluJb SINE Alu -32 280 78 410 167 0 0 chr1 170625392 170625464 -111568200 + tRNA-His-CAC tRNA tRNA 1 72 -3 207 0 0 0 chr1 170625919 170625942 -111567722 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1527 255 103 23 chr1 170625957 170626518 -111567146 - L1ME2 LINE L1 -9 6155 5550 2301 108 0 10 chr1 170626533 170626839 -111566825 - AluSg SINE Alu -7 303 1 1891 119 21 28 chr1 170627567 170627853 -111565811 - AluSg SINE Alu -26 284 1 1997 114 3 28 chr1 170627865 170628182 -111565482 + L1PA11 LINE L1 5865 6173 -1 490 127 0 0 chr1 170629045 170629116 -111564548 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2003 139 7 0 chr1 170629240 170629562 -111564102 - AluSx SINE Alu 0 312 3 1892 250 47 14 chr1 170630556 170631199 -111562465 - L1M4 LINE L1 -2471 3675 3012 4410 156 26 11 chr1 170631266 170632359 -111561305 - L1PA16 LINE L1 -9 6157 5018 802 178 30 24 chr1 170632531 170632700 -111560964 - MER58 DNA MER1_type -13 2407 2238 442 230 34 27 chr1 170633119 170633267 -111560397 + L2 LINE L2 2345 2493 -821 2213 116 10 0 chr1 170633642 170633944 -111559720 + AluSp SINE Alu 2 306 -7 1404 201 48 64 chr1 170633971 170634364 -111559300 + MLT1B LTR MaLR 3 389 -1 897 275 16 4 chr1 170635226 170635484 -111558180 + L1MCc LINE L1 31 291 -6132 1967 106 7 3 chr1 170635486 170635768 -111557896 - AluY SINE Alu -1 310 28 241 171 0 0 chr1 170635868 170635909 -111557755 - Alu SINE Alu -241 62 22 404 296 62 34 chr1 170635919 170636095 -111557569 + L1MCc LINE L1 295 475 -5948 6742 99 9 20 chr1 170636423 170636834 -111556830 + LOR1b-int LTR ERV1 3008 3422 -4698 1753 176 0 29 chr1 170636834 170637146 -111556518 + AluSx SINE Alu 1 303 -9 6742 99 9 20 chr1 170637146 170637722 -111555942 + LOR1b-int LTR ERV1 3422 3984 -4136 347 174 0 14 chr1 170637771 170637840 -111555824 + LOR1b-int LTR ERV1 3995 4062 -4058 366 183 0 0 chr1 170637840 170637911 -111555753 + CT-rich Low_complexity Low_complexity 2 72 0 566 188 0 0 chr1 170637911 170638007 -111555657 - AluJb SINE Alu -179 133 38 6425 128 57 19 chr1 170638007 170639031 -111554633 + LOR1b-int LTR ERV1 4288 5328 -1270 180 0 0 0 chr1 170639031 170639051 -111554613 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 6425 128 57 19 chr1 170639051 170639319 -111554345 + LOR1b-int LTR ERV1 5328 5584 -1014 1745 124 8 8 chr1 170639305 170639571 -111554093 + LOR1b-int LTR ERV1 5799 6064 -2056 * 593 143 0 0 chr1 170639570 170639661 -111554003 + LOR1b-int LTR ERV1 8030 8120 0 * 2463 167 41 0 chr1 170639661 170640104 -111553560 + LOR1b LTR ERV1 1 461 0 1661 156 32 45 chr1 170640601 170641094 -111552570 + AluSx SINE Alu 3 312 0 609 42 0 0 chr1 170641766 170641838 -111551826 + tRNA-Gln-CAG tRNA tRNA 1 72 -3 279 212 61 0 chr1 170643705 170643771 -111549893 - AluSp SINE Alu -112 191 122 359 274 89 16 chr1 170643830 170643954 -111549710 + MER39 LTR ERV1 1 133 -574 * 1034 241 33 83 chr1 170643942 170644362 -111549302 + MER39 LTR ERV1 309 707 0 551 285 43 47 chr1 170644777 170645012 -111548652 - MIR SINE MIR -27 235 2 2070 230 29 88 chr1 170645068 170645786 -111547878 + LTR8 LTR ERV1 16 691 0 362 272 83 122 chr1 170646213 170646435 -111547229 - HAL1b LINE L1 -7 1341 1139 409 91 13 13 chr1 170646435 170646512 -111547152 + (TA)n Simple_repeat Simple_repeat 1 77 0 362 272 83 122 chr1 170646512 170646675 -111546989 - HAL1b LINE L1 -209 1139 971 2203 92 4 4 chr1 170646716 170647049 -111546615 - AluSc SINE Alu 0 333 1 2143 113 3 28 chr1 170647052 170647372 -111546292 - AluSx SINE Alu 0 312 1 979 249 126 29 chr1 170647466 170647816 -111545848 - L1ME2 LINE L1 -119 6045 5662 275 301 66 55 chr1 170648010 170648193 -111545471 - MIR SINE MIR -25 237 53 314 276 98 29 chr1 170649247 170649421 -111544243 - REP3 LTR ERV -373 189 4 269 234 78 0 chr1 170649424 170649488 -111544176 + MER45B DNA AcHobo 312 380 -660 1331 73 0 0 chr1 170649981 170650145 -111543519 - U1 snRNA snRNA -1 164 1 183 42 0 0 chr1 170650217 170650241 -111543423 + (CCCCCA)n Simple_repeat Simple_repeat 3 26 0 497 250 29 7 chr1 170650556 170650696 -111542968 - Charlie4 DNA MER1_type -4 1957 1815 3653 145 44 61 chr1 170651246 170651949 -111541715 - LTR8 LTR ERV1 0 691 1 231 224 15 0 chr1 170652027 170652094 -111541570 - L1ME LINE L1 -358 5812 5745 1875 211 26 7 chr1 170652115 170652541 -111541123 - LTR56 LTR ERV1 0 445 12 6113 69 24 23 chr1 170652549 170653414 -111540250 + SVA Other Other 1 866 -520 350 304 117 13 chr1 170654032 170654262 -111539402 - L1MEc LINE L1 -6014 382 129 1858 251 64 21 chr1 170654362 170654983 -111538681 + MLT1E3 LTR MaLR 1 622 -2 318 284 0 0 chr1 170655671 170655745 -111537919 - LTR16B LTR ERVL -390 74 1 586 285 45 20 chr1 170655766 170655966 -111537698 - ERVL LTR ERVL -3761 2003 1799 394 366 9 9 chr1 170656130 170656351 -111537313 - ERVL LTR ERVL -3546 1450 1230 544 265 95 40 chr1 170656391 170656673 -111536991 - LTR33 LTR ERVL -248 275 9 235 213 66 16 chr1 170657252 170657313 -111536351 + MIR3 SINE MIR 138 201 -7 423 272 42 72 chr1 170658223 170658554 -111535110 + L1PA8A LINE L1 5480 5800 -331 * 1677 188 58 11 chr1 170658282 170658643 -111535021 + L1ME2 LINE L1 5524 5901 -263 409 281 15 69 chr1 170658751 170658954 -111534710 + MLT1-int LTR MaLR 1010 1201 -170 746 285 126 17 chr1 170658960 170659315 -111534349 + MLT1E3 LTR MaLR 229 654 0 1826 137 11 4 chr1 170659567 170659867 -111533797 + AluSq SINE Alu 13 314 0 342 290 37 25 chr1 170660194 170660356 -111533308 + L1MB8 LINE L1 5990 6153 -25 826 275 99 26 chr1 170660366 170660748 -111532916 + L1MCa LINE L1 21 430 -5996 3391 202 33 18 chr1 170660757 170662264 -111531400 + L1MC2 LINE L1 4721 6339 -5 640 198 0 12 chr1 170662746 170662918 -111530746 + GA-rich Low_complexity Low_complexity 3 172 0 197 250 0 0 chr1 170663990 170664038 -111529626 - L2 LINE L2 -1 3312 3265 422 262 57 14 chr1 170664394 170664535 -111529129 - L2 LINE L2 -797 2517 2371 2053 119 0 7 chr1 170664590 170664875 -111528789 + AluY SINE Alu 20 302 -9 1126 125 23 23 chr1 170664886 170665062 -111528602 + AluJo SINE Alu 83 258 -54 416 259 36 9 chr1 170665290 170665402 -111528262 - MLT1I LTR MaLR -18 391 277 419 319 18 0 chr1 170665479 170665592 -111528072 - L2 LINE L2 0 3272 3158 1051 130 49 5 chr1 170665750 170665934 -111527730 - L1M4c LINE L1 -4936 1448 1257 2085 128 3 0 chr1 170665936 170666218 -111527446 + AluSp SINE Alu 1 283 -30 4848 154 79 94 chr1 170666254 170667067 -111526597 - L1M4c LINE L1 -5113 1271 447 235 160 160 0 chr1 170667067 170667117 -111526547 - MLT1J LTR MaLR -266 245 188 4848 154 79 94 chr1 170667117 170667222 -111526442 - L1M4c LINE L1 -5937 447 342 369 0 0 0 chr1 170667222 170667263 -111526401 + (TG)n Simple_repeat Simple_repeat 2 42 0 1877 146 36 0 chr1 170667263 170667538 -111526126 - AluSx SINE Alu -27 285 1 4848 154 79 94 chr1 170667538 170667841 -111525823 - L1M4c LINE L1 -6040 344 18 713 141 42 63 chr1 170667938 170668080 -111525584 - MER4-int LTR ERV1 -5595 1003 865 306 196 0 0 chr1 170668080 170668131 -111525533 - LTR49 LTR ERV1 -282 313 263 2472 97 0 0 chr1 170668151 170668462 -111525202 - AluY SINE Alu 0 311 1 832 195 0 13 chr1 170668462 170668611 -111525053 - AluJb SINE Alu -165 147 1 503 170 9 9 chr1 170669269 170669375 -111524289 - L1MB8 LINE L1 -9 6169 6064 375 258 212 15 chr1 170670818 170671016 -111522648 + MIR SINE MIR 5 241 -21 1988 144 23 3 chr1 170671292 170671597 -111522067 + AluSx SINE Alu 1 311 -1 228 292 26 26 chr1 170671601 170671714 -111521950 + MIR SINE MIR 34 146 -116 477 280 50 46 chr1 170672175 170672393 -111521271 + MIR SINE MIR 34 252 -10 199 303 83 37 chr1 170672851 170672960 -111520704 + L3 LINE CR1 1462 1575 -2 1999 122 153 21 chr1 170673074 170673452 -111520212 - MSTA LTR MaLR 0 428 1 2139 128 3 3 chr1 170673530 170673827 -111519837 - AluSx SINE Alu -15 297 1 1938 156 0 38 chr1 170674153 170674467 -111519197 + AluSx SINE Alu 1 302 -10 1905 174 0 0 chr1 170675003 170675301 -111518363 - AluJb SINE Alu -14 298 1 3300 229 78 83 chr1 170675377 170676080 -111517584 - L1MEc LINE L1 -4759 1637 932 1801 165 18 0 chr1 170676080 170676382 -111517282 - AluSx SINE Alu 0 307 1 3300 229 78 83 chr1 170676382 170676802 -111516862 - L1MEc LINE L1 -5464 932 511 1434 141 18 9 chr1 170676802 170677029 -111516635 - L1MC1 LINE L1 -5 6328 6100 1852 133 34 77 chr1 170677032 170677384 -111516280 - MER1B DNA MER1_type 0 337 1 3300 229 78 83 chr1 170677384 170677866 -111515798 - L1MEc LINE L1 -5887 509 35 308 308 81 9 chr1 170677931 170678057 -111515607 + MIR SINE MIR 25 145 -63 1594 183 7 14 chr1 170680249 170680539 -111513125 - AluJo SINE Alu -24 288 1 2073 139 7 0 chr1 170681335 170681638 -111512026 + AluSx SINE Alu 1 305 -7 1425 152 0 0 chr1 170683343 170683560 -111510104 + AluSg/x SINE Alu 95 311 -1 396 335 17 23 chr1 170684510 170684683 -111508981 - MER5B DNA MER1_type 0 178 7 2035 99 48 48 chr1 170685082 170685395 -111508269 + AluSp SINE Alu 1 313 0 315 85 0 0 chr1 170685404 170685451 -111508213 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 180 372 109 7 chr1 170685662 170685799 -111507865 + MIR3 SINE MIR 44 194 -14 1139 213 97 84 chr1 170687061 170687527 -111506137 - MER66A LTR ERV1 0 578 100 2484 129 3 0 chr1 170687593 170687942 -111505722 - MER66A-int LTR ERV1 0 6676 6327 1101 237 129 25 chr1 170687984 170688171 -111505493 - MER66-int LTR ERV1 -1643 6113 5947 2127 107 10 45 chr1 170688171 170688479 -111505185 + AluSg SINE Alu 1 297 -13 1101 237 129 25 chr1 170688479 170688736 -111504928 - MER66-int LTR ERV1 -1809 5947 4608 668 183 33 0 chr1 170689004 170689124 -111504540 - Tigger2 DNA MER2_type -261 2457 2334 8876 275 44 31 chr1 170694223 170695273 -111498391 - MER66-int LTR ERV1 -1911 5845 4810 2040 118 0 0 chr1 170695273 170695562 -111498102 - AluSx SINE Alu -13 299 11 8876 275 44 31 chr1 170695562 170697114 -111496550 - MER66-int LTR ERV1 -2946 4810 3280 1725 175 14 0 chr1 170697114 170697406 -111496258 - AluSx SINE Alu -10 302 7 8876 275 44 31 chr1 170697406 170699536 -111494128 - MER66-int LTR ERV1 -4476 3280 1302 328 241 108 114 chr1 170699725 170699891 -111493773 - MER66-int LTR ERV1 -3574 3102 2938 1278 177 160 84 chr1 170699953 170700309 -111493355 - MER66-int LTR ERV1 -5562 1114 732 236 184 61 0 chr1 170700316 170700365 -111493299 + (TCCTG)n Simple_repeat Simple_repeat 2 53 0 1090 200 152 50 chr1 170700378 170700809 -111492855 - MER66A LTR ERV1 0 606 100 646 219 94 54 chr1 170701424 170701721 -111491943 - L1MC4 LINE L1 -2 8040 7732 212 232 0 14 chr1 170701762 170701831 -111491833 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 23 0 0 0 chr1 170701861 170701884 -111491780 + AT_rich Low_complexity Low_complexity 1 23 0 2039 171 35 0 chr1 170701915 170702259 -111491405 + MER57A LTR ERV1 14 369 -34 210 191 29 15 chr1 170702259 170702327 -111491337 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 295 261 43 0 chr1 170702665 170702734 -111490930 + tRNA-His-CAC tRNA tRNA 1 72 -3 325 219 101 8 chr1 170703404 170703523 -111490141 - L1ME3 LINE L1 -7 6155 6026 773 168 8 8 chr1 170703535 170703660 -111490004 + FLAM_C SINE Alu 2 126 -17 23 0 0 0 chr1 170703673 170703696 -111489968 + AT_rich Low_complexity Low_complexity 1 23 0 712 213 162 38 chr1 170703705 170704019 -111489645 - L1ME3 LINE L1 -148 6014 5662 393 133 11 33 chr1 170704020 170704110 -111489554 + MER74B LTR ERVL 1 88 -534 414 230 9 0 chr1 170704110 170704223 -111489441 - L1MA10 LINE L1 0 6334 6221 2295 63 0 20 chr1 170704223 170704524 -111489140 + AluY SINE Alu 1 295 -16 886 136 0 0 chr1 170704556 170704688 -111488976 + AluSq/x SINE Alu 1 132 -181 1210 158 0 14 chr1 170704688 170704903 -111488761 - L1MA4 LINE L1 -11 6289 6078 505 271 83 68 chr1 170704904 170705050 -111488614 - L1ME LINE L1 -5720 350 208 4726 162 35 30 chr1 170705050 170705969 -111487695 + MER49 LTR ERV1 1 923 0 505 271 83 68 chr1 170705969 170706161 -111487503 - L1ME LINE L1 -5862 208 7 208 319 14 28 chr1 170706229 170706301 -111487363 + MIR SINE MIR 78 148 -114 517 96 0 14 chr1 170706532 170706605 -111487059 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1273 184 107 0 chr1 170708404 170708665 -111484999 - AluJb SINE Alu -23 289 1 363 180 16 0 chr1 170710625 170710686 -111482978 + tRNA-Val-GTG tRNA tRNA 1 62 -14 1430 145 0 0 chr1 170710693 170710914 -111482750 + AluSp SINE Alu 93 313 0 462 172 16 31 chr1 170710972 170711100 -111482564 + L1MEc LINE L1 996 1121 -5275 2005 95 0 32 chr1 170711110 170711426 -111482238 + AluY SINE Alu 2 307 -4 297 234 32 57 chr1 170711459 170711583 -111482081 + L1MEc LINE L1 1662 1782 -4614 1774 124 0 0 chr1 170711643 170711900 -111481764 + AluSx SINE Alu 1 257 -55 560 138 130 49 chr1 170712060 170712183 -111481481 - FLAM_C SINE Alu 0 133 1 569 82 0 0 chr1 170712207 170712280 -111481384 - tRNA-Asn-AAC tRNA tRNA -3 74 2 2142 85 3 14 chr1 170712963 170713258 -111480406 + AluSx SINE Alu 1 292 -20 388 191 0 0 chr1 170713323 170713391 -111480273 + tRNA-His-CAC tRNA tRNA 6 73 -2 674 207 64 0 chr1 170713884 170714024 -111479640 - U1 snRNA snRNA -14 151 3 367 149 15 0 chr1 170715063 170715130 -111478534 - tRNA-Glu-GAG tRNA tRNA -3 72 5 343 305 30 24 chr1 170715613 170715777 -111477887 + L2 LINE L2 2351 2515 -799 245 243 101 106 chr1 170715816 170716034 -111477630 - MER20 DNA MER1_type -2 217 1 1112 164 74 17 chr1 170716917 170717148 -111476516 - MLT1A1 LTR MaLR 0 365 122 663 245 172 55 chr1 170717191 170717684 -111475980 + L1ME2 LINE L1 4697 5247 -899 3126 181 29 26 chr1 170718859 170719474 -111474190 + MER49 LTR ERV1 307 923 0 474 226 66 46 chr1 170719487 170719756 -111473908 + L1ME2 LINE L1 5200 5471 -703 870 137 189 47 chr1 170719756 170719946 -111473718 - AluSg/x SINE Alu -14 298 82 809 250 139 33 chr1 170719949 170720489 -111473175 + L1ME2 LINE L1 5461 6148 -16 606 138 0 11 chr1 170720506 170720600 -111473064 + AluSg/x SINE Alu 195 287 -25 336 191 15 15 chr1 170721056 170721124 -111472540 - tRNA-His-CAC tRNA tRNA -3 72 5 2358 84 7 0 chr1 170721391 170721701 -111471963 - AluSx SINE Alu 0 312 1 516 99 0 0 chr1 170722392 170722463 -111471201 - tRNA-Gly-GGG tRNA tRNA -3 71 1 1896 123 0 30 chr1 170724004 170724328 -111469336 + AluSc SINE Alu 1 309 0 1727 201 19 27 chr1 170724612 170724985 -111468679 - MLT1A2 LTR MaLR 0 374 5 211 28 56 0 chr1 170726247 170726283 -111467381 + (CAAAA)n Simple_repeat Simple_repeat 4 41 0 672 14 0 0 chr1 170726286 170726359 -111467305 - tRNA-Val-GTG tRNA tRNA -3 73 1 373 105 70 0 chr1 170726433 170726490 -111467174 + Alu SINE Alu 228 288 -12 2252 128 46 4 chr1 170727940 170728468 -111465196 + L1P4 LINE L1 4921 5471 -695 31 44 0 0 chr1 170728822 170728867 -111464797 + AT_rich Low_complexity Low_complexity 1 45 0 358 246 80 14 chr1 170732106 170732244 -111461420 + MLT1C LTR MaLR 1 147 -320 494 311 49 0 chr1 170732712 170732876 -111460788 + MIR SINE MIR 79 250 -12 2164 117 0 0 chr1 170732987 170733294 -111460370 + AluSq SINE Alu 1 307 -6 1630 154 13 42 chr1 170734576 170734888 -111458776 + AluJo SINE Alu 5 307 -5 446 273 87 13 chr1 170835779 170835929 -111357735 + MIR3 SINE MIR 20 180 -28 * 1595 256 112 21 chr1 170835920 170836560 -111357104 + L2 LINE L2 2382 3119 -194 2873 3 0 3 chr1 170836560 170836869 -111356795 + AluYa5 SINE Alu 1 308 -3 1595 256 112 21 chr1 170836869 170837084 -111356580 + L2 LINE L2 3119 3313 0 194 378 161 4 chr1 170837195 170837425 -111356239 + L2 LINE L2 2566 2831 -483 439 202 0 11 chr1 170839182 170839271 -111354393 + L1ME3A LINE L1 6049 6136 -34 1385 239 251 27 chr1 170839809 170839981 -111353683 + HAL1 LINE L1 155 287 -2220 2556 61 0 10 chr1 170839981 170840291 -111353373 + AluY SINE Alu 1 307 -4 1385 239 251 27 chr1 170840291 170840792 -111352872 + HAL1 LINE L1 287 979 -1528 1926 50 0 29 chr1 170841651 170841893 -111351771 - AluY SINE Alu -76 235 1 475 161 11 43 chr1 170841893 170841986 -111351678 + L1MC4a LINE L1 6404 6493 -1315 21 0 0 0 chr1 170842488 170842509 -111351155 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 170843743 170843769 -111349895 + AT_rich Low_complexity Low_complexity 1 26 0 213 317 99 0 chr1 170845442 170845543 -111348121 - MIR SINE MIR -118 144 34 212 148 115 33 chr1 170846984 170847045 -111346619 + MIR SINE MIR 119 184 -78 645 175 158 0 chr1 170847261 170847444 -111346220 - L1MC4a LINE L1 -1335 6473 6262 17414 23 2 0 chr1 170847544 170849704 -111343960 + L1P1 LINE L1 3374 5538 -617 535 275 52 26 chr1 170850434 170850627 -111343037 + MIR SINE MIR 46 243 -19 196 139 0 0 chr1 170850595 170850631 -111343033 + L2 LINE L2 3216 3251 -21 * 1683 167 31 7 chr1 170851638 170851926 -111341738 + AluJo SINE Alu 1 295 -17 22 25 0 25 chr1 170851926 170851946 -111341718 + AT_rich Low_complexity Low_complexity 1 20 -19 2320 99 0 16 chr1 170851946 170852260 -111341404 + AluY SINE Alu 1 309 -2 22 25 0 25 chr1 170852260 170852279 -111341385 + AT_rich Low_complexity Low_complexity 20 39 0 592 242 57 53 chr1 170852343 170852469 -111341195 + MIR SINE MIR 2 131 -131 1655 175 52 3 chr1 170852469 170852760 -111340904 - AluSx SINE Alu -7 305 1 592 242 57 53 chr1 170852760 170852860 -111340804 + MIR SINE MIR 131 229 -33 193 233 67 17 chr1 170852932 170852992 -111340672 - MIR3 SINE MIR -49 159 97 181 223 138 11 chr1 170853337 170853431 -111340233 - L2 LINE L2 -316 2956 2851 1653 155 72 17 chr1 170853714 170854004 -111339660 - AluJb SINE Alu -6 306 1 599 229 115 22 chr1 170854242 170854466 -111339198 - MIR SINE MIR -13 249 4 1922 139 13 16 chr1 170855263 170855566 -111338098 + AluJo SINE Alu 5 306 -6 219 241 19 0 chr1 170856196 170856250 -111337414 - MIR SINE MIR -119 143 89 3355 149 23 69 chr1 170856482 170856850 -111336814 + L1MB7 LINE L1 5357 5681 -503 2306 74 0 3 chr1 170856850 170857163 -111336501 + AluY SINE Alu 1 312 0 3355 149 23 69 chr1 170857163 170857485 -111336179 + L1MB7 LINE L1 5681 6016 -168 652 283 158 6 chr1 170857796 170858371 -111335293 + L1MEc LINE L1 1119 1792 -4604 2348 85 0 3 chr1 170858392 170858686 -111334978 + AluY SINE Alu 1 293 -18 195 42 0 0 chr1 170858903 170858927 -111334737 + (CCCCCT)n Simple_repeat Simple_repeat 4 27 0 229 204 0 0 chr1 170860177 170860221 -111333443 - MIR3 SINE MIR -7 201 158 699 195 118 0 chr1 170860241 170860410 -111333254 + MER5A DNA MER1_type 1 189 0 2115 102 0 0 chr1 170860465 170860730 -111332934 - AluSx SINE Alu -47 265 1 1851 133 18 4 chr1 170862353 170862631 -111331033 + AluSx SINE Alu 29 310 -2 1054 84 0 0 chr1 170863536 170863667 -111329997 - AluSc SINE Alu -177 132 2 674 339 111 7 chr1 170863697 170864149 -111329515 - L2 LINE L2 -609 2705 2207 964 272 122 43 chr1 170864384 170864888 -111328776 + Charlie8 DNA MER1_type 1 532 -1885 362 279 170 45 chr1 170867363 170867740 -111325924 + L2 LINE L2 2830 3253 -19 310 247 157 51 chr1 170867826 170868004 -111325660 - L2 LINE L2 -1 3271 3075 864 132 0 22 chr1 170869065 170869201 -111324463 + L1PA15 LINE L1 6032 6164 -1 615 209 34 47 chr1 170869883 170870031 -111323633 + FRAM SINE Alu 1 146 -30 207 0 0 0 chr1 170870035 170870058 -111323606 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 346 198 43 78 chr1 170870068 170870184 -111323480 + L1M4c LINE L1 1496 1607 -4777 * 1059 190 35 27 chr1 170870178 170870436 -111323228 + L1ME3A LINE L1 5906 6165 -5 6285 18 0 1 chr1 170871853 170872591 -111321073 + L1P LINE L1 2533 3269 -2877 736 264 78 27 chr1 170872729 170873121 -111320543 - Tigger8 DNA MER2_type -171 495 66 1301 250 172 21 chr1 170873128 170873564 -111320100 - MLT1J LTR MaLR -7 504 3 264 257 122 0 chr1 170873691 170873765 -111319899 + Tigger8 DNA MER2_type 267 349 -317 239 330 92 19 chr1 170873976 170874182 -111319482 - L2 LINE L2 -534 2780 2560 1868 120 13 60 chr1 170875321 170875637 -111318027 - AluJb SINE Alu -11 301 1 236 208 38 0 chr1 170875746 170875799 -111317865 + L3 LINE CR1 1510 1564 -13 2004 119 0 0 chr1 170875931 170876228 -111317436 + AluSq SINE Alu 15 311 0 858 169 20 145 chr1 170877072 170877321 -111316343 + AluJo SINE Alu 3 220 -92 2205 180 70 0 chr1 170877395 170877783 -111315881 + MER47B DNA MER2_type 4 418 0 1932 210 43 10 chr1 170877797 170878193 -111315471 - L1MC4a LINE L1 -1903 5905 5497 776 259 215 14 chr1 170878258 170878846 -111314818 + L2 LINE L2 2535 3223 -90 180 188 0 0 chr1 170881777 170881809 -111311855 - MIR SINE MIR -15 247 216 214 296 111 0 chr1 170881858 170881939 -111311725 + MIR SINE MIR 49 138 -124 1233 135 14 0 chr1 170883710 170883932 -111309732 + L1M4 LINE L1 4980 5204 -942 12544 55 85 4 chr1 170884032 170885700 -111307964 - L1P LINE L1 -3766 2380 578 838 31 0 0 chr1 170885667 170885765 -111307899 - L1P LINE L1 -6048 98 1 * 844 182 88 0 chr1 170885985 170886144 -111307520 - FAM SINE Alu -2 173 1 350 221 32 53 chr1 170886162 170886257 -111307407 - MIR SINE MIR -71 137 45 315 150 0 17 chr1 170888044 170888104 -111305560 + L2 LINE L2 3255 3313 0 183 308 0 0 chr1 170888437 170888489 -111305175 - L2 LINE L2 -6 3307 3256 194 240 67 77 chr1 170892153 170892235 -111301429 + MIR SINE MIR 146 228 -34 2083 121 10 3 chr1 170892235 170892532 -111301132 - AluSx SINE Alu -2 310 12 194 240 67 77 chr1 170892532 170892553 -111301111 + MIR SINE MIR 228 248 -14 645 294 22 44 chr1 170893799 170894027 -111299637 + MIR SINE MIR 13 235 -27 2350 105 0 0 chr1 170894170 170894476 -111299188 + AluSx SINE Alu 1 306 -6 514 229 26 104 chr1 170894844 170895075 -111298589 + MIR SINE MIR 37 249 -13 833 132 0 22 chr1 170895538 170895674 -111297990 + L1PA15 LINE L1 6032 6164 -1 1472 179 22 31 chr1 170897465 170897783 -111295881 - L1ME3A LINE L1 -34 6136 5822 1547 206 4 0 chr1 170897979 170898256 -111295408 + AluJo SINE Alu 1 278 -34 495 118 0 0 chr1 170898258 170898326 -111295338 + AluJo/FRAM SINE Alu 211 278 -34 562 129 0 0 chr1 170898329 170898414 -111295250 + AluJo/FRAM SINE Alu 212 296 -16 434 279 66 0 chr1 170898682 170898818 -111294846 + MIR3 SINE MIR 61 205 -3 578 278 19 19 chr1 170899269 170899431 -111294233 - MIR SINE MIR 0 262 101 1895 139 19 59 chr1 170899431 170899755 -111293909 + AluJo SINE Alu 1 311 -1 2050 143 3 0 chr1 170899765 170900058 -111293606 + AluSx SINE Alu 1 294 -18 1722 208 43 29 chr1 170901310 170901953 -111291711 + L1ME1 LINE L1 5055 5708 -458 225 0 0 0 chr1 170901980 170902005 -111291659 + (A)n Simple_repeat Simple_repeat 1 25 0 1880 185 34 40 chr1 170902005 170902476 -111291188 + MLT1D LTR MaLR 27 494 -11 1223 180 47 85 chr1 170902478 170902972 -111290692 + L1ME1 LINE L1 5705 6184 0 181 237 330 41 chr1 170902972 170903069 -111290595 - MER5B DNA MER1_type -53 125 1 997 191 35 23 chr1 170904914 170905171 -111288493 - L1ME3A LINE L1 -5 6165 5906 316 213 42 33 chr1 170905165 170905285 -111288379 - L1MEc LINE L1 -4777 1582 1360 * 207 0 0 0 chr1 170905291 170905314 -111288350 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 636 203 34 47 chr1 170905318 170905466 -111288198 - FRAM SINE Alu -30 146 1 228 244 114 40 chr1 170905655 170905831 -111287833 - L1MEc LINE L1 -5088 1127 939 1801 115 0 0 chr1 170905845 170906079 -111287585 + AluSx SINE Alu 1 234 -78 759 101 0 0 chr1 170906079 170906221 -111287443 + AluSg/x SINE Alu 185 326 0 1432 193 34 15 chr1 170906276 170906545 -111287119 - AluJo SINE Alu 0 312 39 298 331 96 15 chr1 170906578 170906838 -111286826 - L1MEc LINE L1 -5460 936 656 343 203 16 0 chr1 170906993 170907057 -111286607 + MER81 DNA DNA 1 65 -49 383 128 12 105 chr1 170907057 170907143 -111286521 - L1ME LINE L1 -399 5771 5694 368 156 23 39 chr1 170907225 170907353 -111286311 + CT-rich Low_complexity Low_complexity 2 127 0 348 280 98 18 chr1 170907619 170907849 -111285815 - L1MC4 LINE L1 -376 7666 7312 2105 137 0 0 chr1 170908180 170908499 -111285165 + AluSx SINE Alu 1 312 0 840 243 50 38 chr1 170908686 170908925 -111284739 - MIR SINE MIR -19 243 2 195 139 0 0 chr1 170909374 170909410 -111284254 + (T)n Simple_repeat Simple_repeat 1 36 0 456 266 162 18 chr1 170909841 170910063 -111283601 - L1ME4a LINE L1 -113 6008 5755 2095 112 13 13 chr1 170910083 170910387 -111283277 - AluSx SINE Alu -8 304 1 207 381 142 5 chr1 170911742 170911960 -111281704 - L2 LINE L2 -483 2831 2584 1577 259 117 17 chr1 170912083 170912928 -111280736 - L2 LINE L2 0 3313 2382 457 273 87 13 chr1 170912919 170913069 -111280595 - MIR3 SINE MIR -28 180 20 * 25 0 0 0 chr1 170913935 170913960 -111279704 + AT_rich Low_complexity Low_complexity 1 25 0 309 259 105 74 chr1 170914751 170914913 -111278751 + MIR3 SINE MIR 33 199 -9 230 376 77 17 chr1 170915047 170915164 -111278500 - L2 LINE L2 -49 3223 3100 1862 200 105 77 chr1 170915483 170916159 -111277505 - L1MC4a LINE L1 0 7808 7114 272 343 172 0 chr1 170916160 170916329 -111277335 - L2 LINE L2 -564 2750 2553 2311 105 7 0 chr1 170916478 170916782 -111276882 - AluSq SINE Alu -7 306 1 22091 28 1 0 chr1 170917182 170920612 -111273052 + L1PA3 LINE L1 2717 6155 0 226 67 44 0 chr1 170920637 170920682 -111272982 + A-rich Low_complexity Low_complexity 2 48 0 608 189 34 34 chr1 170920789 170920964 -111272700 - L1MB8 LINE L1 0 6178 6004 2117 220 60 33 chr1 170921939 170922571 -111271093 + L1ME2 LINE L1 5507 6155 -9 21 36 0 0 chr1 170923157 170923185 -111270479 + AT_rich Low_complexity Low_complexity 1 28 0 1293 71 0 2 chr1 170923189 170923442 -111270222 - AluY SINE Alu 0 310 1 233 195 0 0 chr1 170924521 170924562 -111269102 - 5S rRNA rRNA -80 41 1 327 332 122 52 chr1 170924997 170925535 -111268129 - L2 LINE L2 0 3272 2694 410 111 0 42 chr1 170925593 170925665 -111267999 + MADE1 DNA Mariner 2 70 -10 476 338 124 53 chr1 170925676 170926279 -111267385 - L2 LINE L2 -725 2589 2030 2131 113 28 0 chr1 170926279 170926570 -111267094 + AluSg SINE Alu 1 299 -11 476 338 124 53 chr1 170926570 170927095 -111266569 - L2 LINE L2 -1284 2030 1381 25 31 0 0 chr1 170927386 170927418 -111266246 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr1 170927926 170927953 -111265711 + AT_rich Low_complexity Low_complexity 1 27 0 943 259 120 68 chr1 170928087 170928554 -111265110 + LTR16C LTR ERVL 1 491 0 600 347 50 57 chr1 170928815 170929239 -111264425 - L2 LINE L2 0 3272 2852 1362 196 4 0 chr1 170929294 170929534 -111264130 + AluJb SINE Alu 2 242 -70 857 168 28 0 chr1 170930544 170930711 -111262953 + FRAM SINE Alu 1 169 0 656 92 46 79 chr1 170931563 170931715 -111261949 - SVA Other Other -1220 166 20 499 246 5 14 chr1 170931815 170932029 -111261635 + GA-rich Low_complexity Low_complexity 1 212 0 22 35 0 0 chr1 170932087 170932116 -111261548 + AT_rich Low_complexity Low_complexity 1 29 0 653 112 0 86 chr1 170932198 170932350 -111261314 + (TTCC)n Simple_repeat Simple_repeat 1 134 -46 2090 122 13 7 chr1 170932350 170932653 -111261011 - AluSg SINE Alu -3 307 3 653 112 0 86 chr1 170932653 170932697 -111260967 + (TTCC)n Simple_repeat Simple_repeat 134 180 0 * 937 131 25 18 chr1 170932663 170932946 -111260718 + CT-rich Low_complexity Low_complexity 1 285 0 192 337 133 11 chr1 170933139 170933320 -111260344 - MIR SINE MIR -2 260 58 926 319 72 20 chr1 170933843 170934298 -111259366 - L2 LINE L2 0 3313 2835 2521 209 64 73 chr1 170934399 170935290 -111258374 + L1ME1 LINE L1 5280 6162 -4 189 0 0 0 chr1 170935456 170935477 -111258187 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2208 73 9 38 chr1 170935493 170935810 -111257854 + AluY SINE Alu 1 308 -3 272 143 20 0 chr1 170936358 170936407 -111257257 + LTR47A LTR ERVL 1 50 -402 594 159 37 148 chr1 170936408 170936597 -111257067 + LTR47A LTR ERVL 173 340 -112 3600 142 88 14 chr1 170936624 170937292 -111256372 - MER72 LTR ERV1 0 722 5 419 53 0 0 chr1 170937296 170937353 -111256311 + LTR47A LTR ERVL 342 398 -54 1744 159 0 67 chr1 170938273 170938600 -111255064 - AluJo SINE Alu -7 305 1 22 35 0 0 chr1 170940019 170940048 -111253616 + AT_rich Low_complexity Low_complexity 1 29 0 1476 178 11 35 chr1 170940065 170940352 -111253312 + AluJo SINE Alu 12 291 -21 31 26 0 0 chr1 170940356 170940394 -111253270 + AT_rich Low_complexity Low_complexity 1 38 0 400 316 60 0 chr1 170940671 170940839 -111252825 - L1ME3A LINE L1 -289 5881 5704 211 296 99 0 chr1 170941145 170941216 -111252448 + L2 LINE L2 3236 3313 0 309 189 160 66 chr1 170941590 170941696 -111251968 - MER63 DNA MER1_type -93 743 2 2182 112 14 0 chr1 170942425 170942719 -111250945 - AluSc SINE Alu -11 298 1 400 327 67 40 chr1 170943032 170943378 -111250286 - L1MEd LINE L1 -5679 440 86 181 283 17 17 chr1 170943934 170943994 -111249670 - L2 LINE L2 -9 3263 3204 802 290 23 5 chr1 170944618 170944839 -111248825 + MIR SINE MIR 12 236 -26 622 132 9 9 chr1 170945595 170945709 -111247955 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 255 125 0 0 chr1 170945853 170945893 -111247771 + (T)n Simple_repeat Simple_repeat 1 40 0 19278 159 38 16 chr1 170946832 170949994 -111243670 + L1MA1 LINE L1 6 3098 -4623 2048 134 23 0 chr1 170949994 170950300 -111243364 + AluSp SINE Alu 1 313 0 19278 159 38 16 chr1 170950300 170950964 -111242700 + L1MA1 LINE L1 3098 3746 -3975 189 0 0 0 chr1 170950964 170950985 -111242679 + (GA)n Simple_repeat Simple_repeat 2 22 0 19278 159 38 16 chr1 170950985 170953764 -111239900 + L1MA1 LINE L1 3746 6786 -935 2425 89 3 0 chr1 170953764 170954067 -111239597 + AluSp SINE Alu 1 304 -9 19278 159 38 16 chr1 170954067 170955024 -111238640 + L1MA1 LINE L1 6786 7721 0 1523 195 15 89 chr1 170955080 170955474 -111238190 + MLT1A1 LTR MaLR 1 365 0 884 131 0 0 chr1 170956112 170956234 -111237430 + FLAM_C SINE Alu 1 122 -21 181 309 11 43 chr1 170956245 170956339 -111237325 + MIR SINE MIR 132 222 -40 896 206 20 32 chr1 170956764 170957017 -111236647 + MLT2B1 LTR ERVL 1 250 -164 566 247 0 59 chr1 170957105 170957275 -111236389 + MLT2B1 LTR ERVL 308 467 -53 270 119 0 0 chr1 170957360 170957402 -111236262 + MLT2C1 LTR ERVL 348 389 -8 185 108 27 0 chr1 170957480 170957517 -111236147 + A-rich Low_complexity Low_complexity 4 41 0 351 288 40 40 chr1 170958114 170958239 -111235425 + L2 LINE L2 3148 3272 0 195 171 98 0 chr1 170958409 170958450 -111235214 + MIR3 SINE MIR 117 161 -47 305 296 28 113 chr1 170958823 170959107 -111234557 + L2 LINE L2 2811 3070 -202 23 0 0 0 chr1 170959740 170959763 -111233901 + AT_rich Low_complexity Low_complexity 1 23 0 371 201 59 187 chr1 170961006 170961225 -111232439 - MIR SINE MIR 0 262 72 4283 162 22 49 chr1 170961446 170962008 -111231656 + L1MB7 LINE L1 5160 5685 -499 2257 74 0 3 chr1 170962008 170962333 -111231331 + AluY SINE Alu 1 324 0 4283 162 22 49 chr1 170962333 170962804 -111230860 + L1MB7 LINE L1 5685 6167 -17 791 269 187 13 chr1 170962807 170963459 -111230205 + L1MEd LINE L1 982 1784 -4612 2410 85 0 3 chr1 170963488 170963795 -111229869 + AluY SINE Alu 1 306 -5 1659 166 11 18 chr1 170963879 170964163 -111229501 - AluJo SINE Alu -30 282 1 22 35 0 0 chr1 170964175 170964204 -111229460 + AT_rich Low_complexity Low_complexity 1 29 0 746 236 23 27 chr1 170964426 170964646 -111229018 + L1ME1 LINE L1 5925 6143 -23 491 269 70 50 chr1 170964663 170964909 -111228755 + L1MEd LINE L1 2153 2377 -3838 754 86 8 8 chr1 170964920 170965037 -111228627 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 2206 124 13 0 chr1 170965067 170965373 -111228291 - AluSx SINE Alu 0 312 3 1767 113 8 4 chr1 170965527 170965774 -111227890 + AluSx SINE Alu 44 291 -21 510 208 108 77 chr1 170965818 170966035 -111227629 + L1MEd LINE L1 2520 2748 -3467 2495 30 40 13 chr1 170966035 170966336 -111227328 - AluY SINE Alu -2 309 1 510 208 108 77 chr1 170966336 170966378 -111227286 + L1MEd LINE L1 2748 2787 -3428 572 236 231 20 chr1 170968564 170968763 -111224901 - MIR SINE MIR 0 262 22 183 356 25 25 chr1 170968803 170968921 -111224743 + MIR3 SINE MIR 87 204 -4 238 195 0 0 chr1 170969756 170969797 -111223867 + L2 LINE L2 3263 3303 -10 548 219 14 41 chr1 170970086 170970232 -111223432 + AluJo SINE Alu 1 142 -170 1615 180 10 27 chr1 170970232 170970532 -111223132 + AluJo SINE Alu 18 312 0 1421 84 0 75 chr1 170970573 170970799 -111222865 + LTR12 LTR ERV1 3 211 -503 694 108 0 0 chr1 170970790 170970892 -111222772 + LTR12 LTR ERV1 613 714 0 * 537 333 5 20 chr1 170973779 170973974 -111219690 - MIR3 SINE MIR -2 206 15 286 224 54 82 chr1 170974044 170974191 -111219473 + L1ME LINE L1 5301 5443 -678 348 286 166 14 chr1 170974219 170974436 -111219228 + L1ME LINE L1 5512 5761 -360 741 58 89 57 chr1 170974704 170975052 -111218612 + (AAATG)n Simple_repeat Simple_repeat 1 359 0 26205 44 38 2 chr1 170975088 170978574 -111215090 + L1P LINE L1 1 3610 -2536 387 267 56 69 chr1 170979190 170979283 -111214381 + L1M4 LINE L1 4613 4706 -1440 2377 107 7 0 chr1 170979283 170979593 -111214071 + AluSx SINE Alu 1 312 0 387 267 56 69 chr1 170979593 170979731 -111213933 + L1M4 LINE L1 4706 4841 -1305 347 105 18 0 chr1 170979971 170980028 -111213636 + (GGGA)n Simple_repeat Simple_repeat 4 61 0 4423 172 55 6 chr1 170980299 170980789 -111212875 - MER6 DNA MER2_type 0 865 317 222 37 0 0 chr1 170980789 170980816 -111212848 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4423 172 55 6 chr1 170980816 170981150 -111212514 - MER6 DNA MER2_type -548 317 1 2406 100 0 3 chr1 170982133 170982444 -111211220 - AluSx SINE Alu -2 310 1 186 167 0 0 chr1 170984093 170984129 -111209535 + T-rich Low_complexity Low_complexity 1 36 0 995 168 16 16 chr1 170985150 170985340 -111208324 + MER20 DNA MER1_type 8 197 -22 215 303 128 18 chr1 170985388 170985497 -111208167 + MIR SINE MIR 12 132 -130 2451 67 0 7 chr1 170985634 170985933 -111207731 + AluY SINE Alu 14 310 -1 2359 84 0 7 chr1 170985950 170986249 -111207415 + AluY SINE Alu 1 297 -14 488 283 0 0 chr1 170986328 170986441 -111207223 + MER81 DNA DNA 1 113 -1 199 293 57 19 chr1 170987467 170987573 -111206091 - L2 LINE L2 -54 3259 3150 1440 243 207 52 chr1 170987647 170988268 -111205396 - HAL1 LINE L1 -1428 1079 556 2536 62 0 10 chr1 170988268 170988572 -111205092 - AluY SINE Alu -10 301 1 1440 243 207 52 chr1 170988572 170988863 -111204801 - HAL1 LINE L1 -1951 556 25 6331 6 3 0 chr1 170989032 170989739 -111203925 + L1PA2 LINE L1 5446 6154 -1 24 0 0 0 chr1 170989856 170989880 -111203784 + AT_rich Low_complexity Low_complexity 1 24 0 2461 74 3 3 chr1 170990193 170990492 -111203172 - AluSp SINE Alu -14 299 1 837 210 0 19 chr1 170990497 170990654 -111203010 - FRAM SINE Alu -12 154 1 640 190 125 41 chr1 170990794 170990965 -111202699 - MIR3 SINE MIR -5 203 19 343 291 55 36 chr1 170991583 170991748 -111201916 + MER5A DNA MER1_type 22 189 0 618 209 39 124 chr1 170991752 170991886 -111201778 - MER112 DNA MER1_type -1 259 160 1925 173 0 3 chr1 170991886 170992193 -111201471 + AluSx SINE Alu 3 308 -4 618 209 39 124 chr1 170992193 170992341 -111201323 - MER112 DNA MER1_type -100 160 1 219 69 0 0 chr1 170992486 170992515 -111201149 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 7406 197 45 42 chr1 170994276 170994353 -111199311 + L1MC4 LINE L1 6224 6299 -1743 1498 211 100 39 chr1 170994353 170994784 -111198880 + MSTB2 LTR MaLR 1 457 0 7406 197 45 42 chr1 170994784 170994914 -111198750 + L1MC4 LINE L1 6299 6427 -1615 2426 67 0 22 chr1 170994914 170995226 -111198438 - AluY SINE Alu -6 305 1 7406 197 45 42 chr1 170995226 170996827 -111196837 + L1MC4 LINE L1 6427 8037 -5 213 369 0 0 chr1 170997225 170997309 -111196355 + L2 LINE L2 3189 3272 0 2238 115 0 6 chr1 170997409 170997722 -111195942 + AluSx SINE Alu 1 311 -1 2572 60 0 0 chr1 170998085 170998387 -111195277 - AluY SINE Alu -8 303 2 2620 137 29 5 chr1 170998575 170998991 -111194673 + MSTB LTR MaLR 1 426 0 842 233 62 29 chr1 171001241 171001481 -111192183 - MIR SINE MIR 0 262 15 585 287 61 4 chr1 171001546 171001776 -111191888 - MIR SINE MIR -6 256 14 2041 128 7 0 chr1 171003088 171003377 -111190287 + AluSp SINE Alu 1 291 -22 309 26 0 0 chr1 171003381 171003419 -111190245 + (CAA)n Simple_repeat Simple_repeat 2 39 0 193 221 260 19 chr1 171006118 171006222 -111187442 - L2 LINE L2 -1 3271 3143 2260 112 0 7 chr1 171007516 171007820 -111185844 + AluSx SINE Alu 2 303 -9 2146 132 0 0 chr1 171007831 171008134 -111185530 + AluSx SINE Alu 1 303 -9 244 271 16 47 chr1 171009056 171009185 -111184479 - L2 LINE L2 -712 2602 2478 1305 185 178 7 chr1 171009911 171010257 -111183407 + L1MC4 LINE L1 7114 7601 -441 316 317 186 60 chr1 171010725 171010924 -111182740 - HAL1 LINE L1 -2261 246 23 425 215 7 0 chr1 171011010 171011154 -111182510 + (TA)n Simple_repeat Simple_repeat 1 145 0 182 179 18 0 chr1 171011193 171011249 -111182415 + (TA)n Simple_repeat Simple_repeat 2 58 0 1165 135 65 0 chr1 171012172 171012372 -111181292 - MER20 DNA MER1_type -5 214 2 862 255 14 9 chr1 171012482 171012698 -111180966 + MIR SINE MIR 2 218 -44 384 77 0 0 chr1 171012753 171012805 -111180859 + (CA)n Simple_repeat Simple_repeat 2 53 0 204 329 0 12 chr1 171013169 171013254 -111180410 + MIR SINE MIR 167 250 -12 439 305 149 7 chr1 171014984 171015190 -111178474 - MIR SINE MIR -34 228 1 2165 125 0 47 chr1 171015205 171015526 -111178138 - AluSx SINE Alu -6 306 1 333 260 39 39 chr1 171015637 171015764 -111177900 - MIR SINE MIR -63 199 73 230 346 0 30 chr1 171016400 171016501 -111177163 - MER5A DNA MER1_type -3 186 89 2243 52 0 8 chr1 171017146 171017414 -111176250 - AluY SINE Alu -3 308 43 494 253 54 73 chr1 171017641 171017902 -111175762 - MER112 DNA MER1_type 0 256 1 210 342 25 13 chr1 171017937 171018016 -111175648 + L2 LINE L2 3158 3237 -35 1440 161 69 66 chr1 171018109 171018457 -111175207 - L1ME2 LINE L1 -10 6154 5806 185 316 0 0 chr1 171019787 171019844 -111173820 - L2 LINE L2 -2 3270 3214 219 250 0 0 chr1 171020234 171020278 -111173386 - MIR SINE MIR -140 122 79 485 248 51 19 chr1 171020404 171020561 -111173103 + MIR SINE MIR 77 238 -24 256 220 0 34 chr1 171021469 171021528 -111172136 - MIR3 SINE MIR -2 206 150 243 296 28 0 chr1 171021739 171021810 -111171854 - MIR3 SINE MIR -50 158 86 200 211 260 19 chr1 171022945 171023049 -111170615 - L2 LINE L2 -1 3271 3143 398 323 96 35 chr1 171023694 171024007 -111169657 - MLT1K LTR MaLR -78 510 179 26 50 0 0 chr1 171027222 171027262 -111166402 + AT_rich Low_complexity Low_complexity 1 40 0 246 62 0 0 chr1 171028296 171028328 -111165336 + (T)n Simple_repeat Simple_repeat 1 32 0 317 250 48 80 chr1 171028819 171029007 -111164657 - L1ME4a LINE L1 -53 6068 5887 187 308 0 0 chr1 171029109 171029161 -111164503 + MIR SINE MIR 201 252 -10 237 286 14 0 chr1 171029206 171029276 -111164388 - L2 LINE L2 0 3272 3202 228 375 17 0 chr1 171029470 171029590 -111164074 - L2 LINE L2 -242 3030 2909 1990 164 0 6 chr1 171030645 171030957 -111162707 + AluSx SINE Alu 1 310 -2 1340 62 0 12 chr1 171030964 171031124 -111162540 + AluSp SINE Alu 2 159 -154 273 315 11 0 chr1 171031139 171031228 -111162436 + L1M4 LINE L1 611 700 -5842 1522 237 68 23 chr1 171031413 171032122 -111161542 + L1M4 LINE L1 820 1548 -4994 204 277 7 21 chr1 171032146 171032287 -111161377 + CT-rich Low_complexity Low_complexity 1 139 0 22 35 0 0 chr1 171032576 171032605 -111161059 + AT_rich Low_complexity Low_complexity 1 29 0 445 317 84 32 chr1 171033043 171033390 -111160274 - L2 LINE L2 -499 2815 2451 472 325 42 11 chr1 171034701 171034892 -111158772 + HERVL LTR ERVL 2267 2463 -3191 205 293 0 43 chr1 171036632 171036748 -111156916 + (CCG)n Simple_repeat Simple_repeat 3 113 0 323 197 15 0 chr1 171037478 171037544 -111156120 - MIR3 SINE MIR -47 161 95 1341 162 132 0 chr1 171038021 171038287 -111155377 + AluJo SINE Alu 2 302 0 1249 135 0 16 chr1 171038408 171038601 -111155063 + MER30B DNA MER1_type 1 190 0 700 165 0 0 chr1 171038967 171039082 -111154582 + FLAM_C SINE Alu 1 115 -18 725 50 118 12 chr1 171039987 171040327 -111153337 + (AAATG)n Simple_repeat Simple_repeat 1 376 0 26 50 0 0 chr1 171043744 171043784 -111149880 + AT_rich Low_complexity Low_complexity 1 40 0 443 291 19 0 chr1 171043943 171044101 -111149563 + AluJb SINE Alu 1 161 -151 237 65 0 0 chr1 171044819 171044850 -111148814 + (T)n Simple_repeat Simple_repeat 1 31 0 301 257 48 70 chr1 171045342 171045529 -111148135 - L1ME4a LINE L1 -52 6069 5887 221 289 0 0 chr1 171045631 171045683 -111147981 + MIR SINE MIR 201 252 -10 267 286 14 0 chr1 171045728 171045798 -111147866 - L2 LINE L2 0 3272 3202 266 375 17 0 chr1 171045992 171046112 -111147552 - L2 LINE L2 -242 3030 2909 1997 155 3 7 chr1 171047167 171047477 -111146187 + AluSx SINE Alu 1 309 -3 2348 57 0 11 chr1 171047484 171047767 -111145897 + AluSp SINE Alu 2 281 -32 195 100 0 0 chr1 171047767 171047797 -111145867 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 314 243 12 8 chr1 171048345 171048465 -111145199 - L1ME4a LINE L1 -302 5819 5744 2198 100 0 10 chr1 171048527 171048826 -111144838 - AluSg SINE Alu -14 296 1 338 336 55 8 chr1 171051145 171051273 -111142391 - L2 LINE L2 0 3272 3139 2257 110 0 16 chr1 171051510 171051827 -111141837 - AluSx SINE Alu 0 312 1 229 274 14 14 chr1 171051952 171052025 -111141639 + MER113 DNA MER1_type? 445 517 -4 304 320 16 58 chr1 171052142 171052355 -111141309 + MIR SINE MIR 15 217 -45 772 283 0 11 chr1 171052453 171052640 -111141024 + MIR SINE MIR 10 194 -68 236 246 217 0 chr1 171053178 171053247 -111140417 - L3 LINE CR1 -467 1110 1027 1173 191 27 19 chr1 171053304 171053561 -111140103 - MER2 DNA MER2_type 0 345 87 4785 181 11 7 chr1 171053573 171054679 -111138985 - L1PA16 LINE L1 0 6166 5056 4878 201 18 12 chr1 171054682 171055872 -111137792 - L1 LINE L1 -1984 4162 2966 516 180 98 16 chr1 171055899 171056021 -111137643 - MLT2F LTR ERVL -525 138 7 208 261 0 0 chr1 171056194 171056240 -111137424 + L2 LINE L2 3261 3306 -7 2228 194 48 31 chr1 171056294 171056834 -111136830 + MLT2B3 LTR ERVL 3 551 -3 1881 161 10 3 chr1 171057086 171057385 -111136279 + AluJb SINE Alu 1 301 -11 276 239 15 15 chr1 171057592 171057659 -111136005 + GA-rich Low_complexity Low_complexity 2 68 0 244 229 0 0 chr1 171059143 171059191 -111134473 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 246 32 0 0 chr1 171059704 171059735 -111133929 + (CA)n Simple_repeat Simple_repeat 1 31 0 204 239 0 0 chr1 171060625 171060671 -111132993 + (TATG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 171060835 171060858 -111132806 + AT_rich Low_complexity Low_complexity 1 23 0 256 266 49 28 chr1 171060978 171061121 -111132543 + Charlie7 DNA MER1_type 1 146 -2466 258 32 0 0 chr1 171061177 171061208 -111132456 + (TTA)n Simple_repeat Simple_repeat 1 31 0 398 250 89 0 chr1 171061208 171061320 -111132344 + MLT1J LTR MaLR 80 201 -310 378 235 25 8 chr1 171061737 171061856 -111131808 + MLT2F LTR ERVL 543 663 0 23 33 0 0 chr1 171062562 171062592 -111131072 + AT_rich Low_complexity Low_complexity 1 30 0 187 233 0 0 chr1 171062598 171062641 -111131023 - MIR SINE MIR -59 203 161 345 311 33 71 chr1 171062658 171062841 -111130823 + MIR SINE MIR 18 193 -69 405 298 39 0 chr1 171062900 171063004 -111130660 + L2 LINE L2 3204 3311 -2 23 0 0 0 chr1 171063675 171063698 -111129966 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 171063755 171063778 -111129886 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr1 171063898 171063931 -111129733 + (CA)n Simple_repeat Simple_repeat 2 34 0 645 294 77 13 chr1 171064106 171064341 -111129323 - MIR SINE MIR -11 251 2 2109 141 30 28 chr1 171064375 171064738 -111128926 + THE1B LTR MaLR 1 364 0 571 132 99 0 chr1 171064894 171064985 -111128679 + AluSq/x SINE Alu 9 108 -204 197 132 26 0 chr1 171066046 171066084 -111127580 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 4264 233 22 17 chr1 171066515 171067548 -111126116 + MER45B DNA AcHobo 1 1038 -2 2106 129 3 0 chr1 171068363 171068666 -111124998 - AluSx SINE Alu -8 304 1 429 282 87 19 chr1 171068952 171069261 -111124403 - L1M4 LINE L1 -1327 4819 4490 349 336 22 0 chr1 171069384 171069521 -111124143 - L1M4 LINE L1 -1830 4316 4177 387 313 76 13 chr1 171069793 171070017 -111123647 - LTR67 LTR ERVL -310 247 10 242 261 62 66 chr1 171070101 171070358 -111123306 - L1M4 LINE L1 -2098 4048 3793 588 262 109 31 chr1 171070370 171070790 -111122874 - HAL1 LINE L1 -340 2167 1715 647 235 110 31 chr1 171070910 171071165 -111122499 - HAL1 LINE L1 -697 1810 1536 779 290 93 11 chr1 171071236 171071771 -111121893 - HAL1 LINE L1 -1188 1319 741 704 229 7 0 chr1 171071958 171072102 -111121562 + MER45A DNA AcHobo 34 178 0 263 298 171 13 chr1 171072132 171072290 -111121374 - HAL1 LINE L1 -2019 488 306 257 293 86 50 chr1 171072859 171072999 -111120665 - MIR SINE MIR -108 154 10 2608 102 8 0 chr1 171073390 171073751 -111119913 - THE1B LTR MaLR 0 364 1 10131 99 10 59 chr1 171073751 171074833 -111118831 - THE1B-int LTR MaLR 0 1580 607 207 0 0 0 chr1 171074833 171074856 -111118808 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 10131 99 10 59 chr1 171074856 171075434 -111118230 - THE1B-int LTR MaLR -973 607 2 2536 125 11 0 chr1 171075435 171075795 -111117869 - THE1B LTR MaLR 0 364 1 1947 144 32 0 chr1 171075820 171076105 -111117559 - AluSx SINE Alu -18 294 1 22 0 0 0 chr1 171076774 171076796 -111116868 + AT_rich Low_complexity Low_complexity 1 22 0 2287 113 0 6 chr1 171077256 171077567 -111116097 - AluSc SINE Alu 0 309 1 38593 71 6 5 chr1 171078365 171084517 -111109147 + L1PA5 LINE L1 1 6154 0 340 262 55 94 chr1 171084900 171085137 -111108527 + ERVL LTR ERVL 2706 2871 -2614 300 338 25 25 chr1 171085252 171085409 -111108255 + ERVL LTR ERVL 3419 3575 -2189 * 1028 313 95 27 chr1 171085407 171086154 -111107510 + ERVL LTR ERVL 875 1737 -3259 773 351 16 32 chr1 171086211 171086653 -111107011 + ERVL LTR ERVL 2114 2548 -3216 1257 186 55 66 chr1 171086665 171087031 -111106633 - MLT1B LTR MaLR 0 390 29 460 271 33 62 chr1 171087044 171087254 -111106410 + ERVL LTR ERVL 2539 2742 -2254 881 338 43 9 chr1 171087323 171087881 -111105783 + ERVL LTR ERVL 2718 3059 -1937 457 305 119 28 chr1 171088058 171088498 -111105166 + ERVL LTR ERVL 3237 4038 -1385 461 200 0 0 chr1 171088622 171088712 -111104952 - MLT1C LTR MaLR 0 467 378 * 944 181 26 44 chr1 171088710 171088937 -111104727 - MLT1C LTR MaLR -244 223 1 287 335 24 44 chr1 171089049 171089297 -111104367 + ERVL LTR ERVL 4027 4269 -727 1748 232 79 36 chr1 171089794 171090411 -111103253 - LTR48B LTR ERV1 0 644 1 1877 258 85 26 chr1 171090500 171091160 -111102504 - MER69 DNA AcHobo -483 743 45 386 316 27 21 chr1 171091294 171091481 -111102183 + LTR67 LTR ERVL 2 189 -368 457 298 87 43 chr1 171091760 171091975 -111101689 + L1MC4a LINE L1 5375 5579 -2229 2433 80 0 0 chr1 171091975 171092276 -111101388 + AluY SINE Alu 1 301 -10 457 298 87 43 chr1 171092276 171092623 -111101041 + L1MC4a LINE L1 5579 5962 -1846 275 292 0 0 chr1 171093459 171093531 -111100133 - MLT1J LTR MaLR -93 418 347 22 35 0 0 chr1 171093574 171093603 -111100061 + AT_rich Low_complexity Low_complexity 1 29 0 1420 218 203 37 chr1 171093625 171094083 -111099581 - MLT1E1 LTR MaLR -2 652 58 27 29 0 0 chr1 171094088 171094122 -111099542 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr1 171094296 171094324 -111099340 + AT_rich Low_complexity Low_complexity 1 28 0 946 242 9 0 chr1 171094732 171094959 -111098705 - MLT1H1 LTR MaLR 0 555 327 1199 240 63 29 chr1 171095015 171095427 -111098237 + MER95 LTR ERV 1 426 -5 243 0 0 0 chr1 171095440 171095467 -111098197 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 257 352 20 10 chr1 171096436 171096632 -111097032 + MER57-int LTR ERV1 1173 1370 -5431 2301 108 0 0 chr1 171097842 171098139 -111095525 - AluSx SINE Alu -15 297 1 250 366 7 44 chr1 171098161 171098354 -111095310 + MER57-int LTR ERV1 3892 4074 -4552 2498 49 3 16 chr1 171098354 171098662 -111095002 + AluY SINE Alu 1 304 -7 250 366 7 44 chr1 171098662 171098741 -111094923 + MER57-int LTR ERV1 4074 4154 -4472 266 301 9 18 chr1 171099062 171099175 -111094489 + MER57-int LTR ERV1 2843 2954 -3847 259 333 11 11 chr1 171100010 171100100 -111093564 + MER57-int LTR ERV1 3792 3881 -2920 239 0 32 0 chr1 171100232 171100263 -111093401 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 267 330 0 0 chr1 171100428 171100531 -111093133 + MER57-int LTR ERV1 5486 5588 -1949 1605 167 5 0 chr1 171100582 171101023 -111092641 + L1M3f LINE L1 433 907 -4421 * 8768 63 6 2 chr1 171101022 171102238 -111091426 + L1P LINE L1 3595 4814 -1332 12098 52 2 1 chr1 171102338 171103971 -111089693 + L1P LINE L1 1494 3127 -3019 11933 38 4 1 chr1 171104108 171106347 -111087317 - L1PA3 LINE L1 0 6155 3912 34568 60 27 28 chr1 171106451 171108311 -111085353 + L1P LINE L1 1 1861 -4285 261 181 0 0 chr1 171108311 171108389 -111085275 + Alu SINE Alu 256 308 0 34568 60 27 28 chr1 171108389 171111322 -111082342 + L1P LINE L1 1861 4866 -1280 29261 114 16 58 chr1 171112001 171118417 -111075247 - L1PA7 LINE L1 -5 6149 12 23 0 0 0 chr1 171118438 171118461 -111075203 + AT_rich Low_complexity Low_complexity 1 23 0 350 239 77 17 chr1 171118770 171118887 -111074777 + L1MD2 LINE L1 4 127 -6413 6474 248 79 18 chr1 171118898 171123232 -111070432 + L1MD2 LINE L1 397 5433 -1107 2350 143 31 31 chr1 171123233 171123686 -111069978 + L1MB2 LINE L1 5690 6142 -29 23 0 0 0 chr1 171123687 171123710 -111069954 + AT_rich Low_complexity Low_complexity 1 23 0 1134 202 88 9 chr1 171123728 171124246 -111069418 + L1MD2 LINE L1 5421 5984 -652 619 152 0 0 chr1 171124246 171124351 -111069313 - AluSg/x SINE Alu 0 309 205 547 155 0 0 chr1 171124358 171124442 -111069222 - AluSg/x SINE Alu -21 289 206 2040 128 3 0 chr1 171124449 171124739 -111068925 - AluSx SINE Alu -21 291 1 1942 233 55 15 chr1 171124742 171125283 -111068381 + L1MD2 LINE L1 5977 6539 -214 533 232 33 0 chr1 171125290 171125441 -111068223 + L1MD2 LINE L1 6595 6750 -3 339 123 346 0 chr1 171126458 171126539 -111067125 - L1MB1 LINE L1 0 6168 6060 1311 166 0 5 chr1 171126546 171126751 -111066913 - AluJb SINE Alu -8 304 101 3439 167 77 9 chr1 171126751 171127354 -111066310 - L1MB1 LINE L1 -114 6054 5493 1896 174 7 0 chr1 171127354 171127648 -111066016 - AluJb SINE Alu -14 298 3 3439 167 77 9 chr1 171127648 171128250 -111065414 - L1MB1 LINE L1 -675 5493 4774 534 194 35 0 chr1 171128271 171128415 -111065249 - L1MB1 LINE L1 -1538 4608 4460 584 284 58 0 chr1 171128419 171128627 -111065037 - L1MB1 LINE L1 -3333 2813 2594 1198 198 0 0 chr1 171128669 171128907 -111064757 - L1P LINE L1 -2200 3946 3709 357 210 0 20 chr1 171128915 171129015 -111064649 - L1M4 LINE L1 -3127 3019 2922 16239 45 1 1 chr1 171129019 171131789 -111061875 - L1PA4 LINE L1 -6 6149 3370 6798 73 2 1 chr1 171131922 171133372 -111060292 + L1PA6 LINE L1 4701 6154 0 5960 159 117 7 chr1 171134954 171136973 -111056691 + L1PA14 LINE L1 2367 4163 -1998 8987 156 12 1 chr1 171136973 171138081 -111055583 + L1PA12 LINE L1 3582 4676 -1492 180 0 0 0 chr1 171138081 171138101 -111055563 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8987 156 12 1 chr1 171138101 171139524 -111054140 + L1PA12 LINE L1 4676 6168 0 5960 159 117 7 chr1 171139524 171140859 -111052805 + L1PA14 LINE L1 4163 6158 -3 665 250 65 0 chr1 171140860 171141076 -111052588 + L1 LINE L1 2857 3086 -4479 875 80 131 0 chr1 171141077 171141263 -111052401 + LTR12 LTR ERV1 1 277 -437 326 235 0 0 chr1 171141263 171141344 -111052320 + LTR30 LTR ERV1 544 624 -98 1188 115 22 0 chr1 171141344 171141526 -111052138 + LTR12 LTR ERV1 359 544 -170 * 9866 107 18 2 chr1 171141524 171143006 -111050658 + HERV9 LTR ERV1 1468 2972 -5427 2110 152 91 69 chr1 171143005 171144049 -111049615 + HERV9 LTR ERV1 840 4983 -3416 * 4005 116 19 0 chr1 171144044 171144675 -111048989 + HERV9 LTR ERV1 7757 8399 0 2328 74 205 135 chr1 171144675 171145217 -111048447 + LTR12 LTR ERV1 1 580 -134 1960 211 20 28 chr1 171145217 171146042 -111047622 + L1 LINE L1 3083 3901 -3664 * 3199 171 14 45 chr1 171146021 171146350 -111047314 + L1 LINE L1 5858 6196 -1369 2920 99 52 9 chr1 171146350 171146795 -111046869 + L1PA11 LINE L1 5709 6173 -1 3199 171 14 45 chr1 171146795 171147242 -111046422 + L1 LINE L1 6196 6610 -955 1590 219 67 2 chr1 171147269 171147670 -111045994 + MER95 LTR ERV 1 427 -4 238 234 35 138 chr1 171147670 171147843 -111045821 - MLT1G1 LTR MaLR -298 292 153 2039 121 0 52 chr1 171147843 171148150 -111045514 - AluSg SINE Alu -19 291 1 238 234 35 138 chr1 171148150 171148237 -111045427 - MLT1G1 LTR MaLR -437 153 59 216 216 0 0 chr1 171149003 171149054 -111044610 + (CGTG)n Simple_repeat Simple_repeat 4 54 0 26357 61 8 2 chr1 171150471 171154052 -111039612 - L1P LINE L1 -2543 3603 2 1275 277 29 34 chr1 171154051 171154703 -111038961 - L1M3de LINE L1 -4747 1916 1285 * 646 327 47 22 chr1 171154776 171155177 -111038487 - L1M3de LINE L1 -5730 933 523 1582 133 0 0 chr1 171156015 171156233 -111037431 + AluSx SINE Alu 1 218 -94 273 321 85 0 chr1 171156734 171156840 -111036824 - L2 LINE L2 -9 3304 3190 815 322 150 13 chr1 171158073 171158561 -111035103 - L2 LINE L2 0 3313 2762 538 283 41 0 chr1 171158886 171159031 -111034633 + L2 LINE L2 2608 2758 -556 297 310 0 0 chr1 171159113 171159200 -111034464 + MLT1J LTR MaLR 95 181 -330 309 155 0 0 chr1 171159265 171159323 -111034341 + CT-rich Low_complexity Low_complexity 1 58 0 366 320 8 0 chr1 171159387 171159515 -111034149 - MLT1J LTR MaLR -132 379 251 1179 151 8 2 chr1 171159518 171168193 -111025471 - ALR/Alpha Satellite centromeric 0 8733 1 860 172 12 4 chr1 171168205 171168809 -111024855 - ALR/Alpha Satellite centromeric 0 608 1 1105 164 6 1 chr1 171168831 171170848 -111022816 - ALR/Alpha Satellite centromeric 0 2027 1 2310 95 3 0 chr1 171171506 171171811 -111021853 - AluSp SINE Alu -7 306 1 195 42 0 0 chr1 171171936 171171960 -111021704 + (TG)n Simple_repeat Simple_repeat 1 24 0 1476 177 23 39 chr1 171172439 171172744 -111020920 + AluJo SINE Alu 13 312 0 541 286 29 40 chr1 171172873 171173048 -111020616 - MER5B DNA MER1_type -3 175 3 469 173 0 0 chr1 171173708 171173783 -111019881 - AluJb SINE Alu -39 273 199 258 261 122 35 chr1 171173783 171173898 -111019766 - MIR SINE MIR -130 132 8 609 141 22 15 chr1 171174416 171174554 -111019110 + L1MC4 LINE L1 6868 7076 -795 524 226 30 0 chr1 171174553 171174686 -111018978 + L1MC4a LINE L1 7159 7295 -513 * 1882 178 0 0 chr1 171174729 171175053 -111018611 - AluJb SINE Alu 0 324 1 1489 226 31 106 chr1 171175605 171176860 -111016804 + L1MD3 LINE L1 6440 7903 -139 415 240 70 0 chr1 171177763 171177863 -111015801 - MER20 DNA MER1_type 0 219 113 1538 216 28 58 chr1 171177867 171178335 -111015329 + MLT1C LTR MaLR 1 454 -13 500 183 26 4 chr1 171178368 171178477 -111015187 - MER20 DNA MER1_type -134 85 1 21 0 0 0 chr1 171178696 171178717 -111014947 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr1 171178951 171178980 -111014684 + (TA)n Simple_repeat Simple_repeat 2 30 0 2084 127 3 3 chr1 171178980 171179271 -111014393 - AluSg SINE Alu -19 291 1 190 324 0 68 chr1 171180538 171180612 -111013052 - MIR3 SINE MIR -129 79 11 258 81 0 0 chr1 171181974 171182011 -111011653 + (TG)n Simple_repeat Simple_repeat 1 37 0 344 308 10 0 chr1 171182011 171182115 -111011549 + GA-rich Low_complexity Low_complexity 2 106 0 249 33 0 0 chr1 171182129 171182159 -111011505 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 2244 59 42 10 chr1 171182278 171182566 -111011098 - AluY SINE Alu -14 297 1 531 109 0 22 chr1 171182570 171182662 -111011002 - L1PA8 LINE L1 0 6172 6083 2411 84 0 3 chr1 171183085 171183393 -111010271 + AluSc SINE Alu 2 308 -1 813 146 0 76 chr1 171183583 171183749 -111009915 - FLAM_C SINE Alu 0 133 1 7596 13 0 0 chr1 171183801 171185014 -111008650 - L1HS LINE L1 -2 6153 4941 22755 36 0 0 chr1 171185114 171188713 -111004951 + L1PA4 LINE L1 2545 6154 -1 406 249 49 76 chr1 171188856 171189081 -111004583 - MER112 DNA MER1_type -12 248 30 23 33 0 0 chr1 171189448 171189478 -111004186 + AT_rich Low_complexity Low_complexity 1 30 0 353 366 57 15 chr1 171189520 171189851 -111003813 + L1MC4a LINE L1 5563 5907 -1901 249 33 0 0 chr1 171189906 171189936 -111003728 + (CA)n Simple_repeat Simple_repeat 1 30 0 680 278 109 108 chr1 171190051 171190966 -111002698 - L1MEd LINE L1 -5193 926 11 872 241 27 5 chr1 171191341 171191528 -111002136 + MER20 DNA MER1_type 7 197 -22 183 100 0 0 chr1 171191536 171191566 -111002098 + (CAAAAA)n Simple_repeat Simple_repeat 5 34 0 2000 111 0 0 chr1 171192407 171192669 -111000995 - AluSx SINE Alu -30 282 21 685 264 26 26 chr1 171192872 171193065 -111000599 + MIR SINE MIR 8 200 -62 27 0 0 0 chr1 171193111 171193138 -111000526 + AT_rich Low_complexity Low_complexity 1 27 0 242 247 26 26 chr1 171193534 171193611 -111000053 + MER65C LTR ERV1 2 78 -383 324 0 0 0 chr1 171193611 171193647 -111000017 + (A)n Simple_repeat Simple_repeat 1 36 0 1660 203 32 13 chr1 171193647 171194027 -110999637 + MER65C LTR ERV1 75 461 0 1053 216 133 59 chr1 171194201 171194229 -110999435 - MER92A LTR ERV1 -8 404 380 330 26 0 0 chr1 171194229 171194268 -110999396 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1902 120 41 0 chr1 171194269 171194536 -110999128 - AluSx SINE Alu -32 280 3 1053 216 133 59 chr1 171194536 171194880 -110998784 - MER92A LTR ERV1 -31 381 2 279 0 0 0 chr1 171195354 171195385 -110998279 + (CA)n Simple_repeat Simple_repeat 1 31 0 3752 61 6 0 chr1 171196195 171196685 -110996979 + L1P LINE L1 1 493 -5653 521 279 129 37 chr1 171196826 171197260 -110996404 + L1MEd LINE L1 453 926 -5193 249 33 0 0 chr1 171197375 171197405 -110996259 + (TG)n Simple_repeat Simple_repeat 1 30 0 353 366 57 15 chr1 171197460 171197791 -110995873 - L1MC4a LINE L1 -1901 5907 5563 23 33 0 0 chr1 171197833 171197863 -110995801 + AT_rich Low_complexity Low_complexity 1 30 0 477 251 48 74 chr1 171198230 171198461 -110995203 + MER112 DNA MER1_type 30 254 -6 7207 26 0 0 chr1 171198598 171199441 -110994223 - L1PA4 LINE L1 -1 6154 5312 251 298 112 58 chr1 171199992 171200180 -110993484 - L2 LINE L2 -103 3210 3013 3452 86 11 4 chr1 171200465 171200940 -110992724 - L1PA10 LINE L1 -11 6157 5680 279 0 0 0 chr1 171201085 171201116 -110992548 + (TG)n Simple_repeat Simple_repeat 2 32 0 2092 190 43 9 chr1 171203506 171203943 -110989721 - MER66A LTR ERV1 0 478 27 524 278 67 33 chr1 171204916 171205096 -110988568 + MIR SINE MIR 32 217 -45 185 223 272 19 chr1 171205158 171205261 -110988403 - MIR SINE MIR -14 248 120 349 345 118 13 chr1 171205514 171205752 -110987912 - L2 LINE L2 -943 2371 2109 1626 169 6 35 chr1 171206067 171206380 -110987284 - AluJo SINE Alu -8 304 1 1340 244 21 47 chr1 171206736 171206758 -110986906 - L1MC5 LINE L1 -491 7470 7449 2293 112 0 6 chr1 171206758 171207070 -110986594 + AluSq SINE Alu 1 310 -3 1340 244 21 47 chr1 171207070 171207519 -110986145 - L1MC5 LINE L1 -512 7449 7011 192 77 0 0 chr1 171207548 171207574 -110986090 + (TG)n Simple_repeat Simple_repeat 2 27 0 473 17 0 0 chr1 171207671 171207729 -110985935 + L1PA4 LINE L1 6096 6153 -2 339 280 120 10 chr1 171208008 171208254 -110985410 - LTR48 LTR ERV1 0 747 353 329 43 21 0 chr1 171208498 171208545 -110985119 + (TG)n Simple_repeat Simple_repeat 2 49 0 297 135 0 0 chr1 171208670 171208722 -110984942 + L1MB1 LINE L1 6115 6166 -2 403 240 45 39 chr1 171210995 171211174 -110982490 + CT-rich Low_complexity Low_complexity 1 180 0 21 36 0 0 chr1 171213010 171213038 -110980626 + AT_rich Low_complexity Low_complexity 1 28 0 209 205 0 0 chr1 171214154 171214193 -110979471 + (CA)n Simple_repeat Simple_repeat 2 40 0 194 238 57 48 chr1 171216124 171216229 -110977435 - L3b LINE CR1 -217 1366 1261 273 207 52 0 chr1 171216501 171216559 -110977105 + MER5A DNA MER1_type 6 66 -123 25 31 0 0 chr1 171216781 171216813 -110976851 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 171218186 171218207 -110975457 + AT_rich Low_complexity Low_complexity 1 21 0 443 317 154 10 chr1 171218772 171218980 -110974684 + MIR SINE MIR 10 247 -15 22 0 0 0 chr1 171218991 171219013 -110974651 + AT_rich Low_complexity Low_complexity 1 22 0 379 333 40 17 chr1 171219014 171219188 -110974476 + MER5B DNA MER1_type 1 178 0 188 312 237 14 chr1 171219779 171219994 -110973670 - L3 LINE CR1 -136 1441 1179 23 33 0 0 chr1 171223223 171223253 -110970411 + AT_rich Low_complexity Low_complexity 1 30 0 1545 169 25 14 chr1 171225010 171225289 -110968375 + AluJo SINE Alu 1 282 -30 771 303 28 12 chr1 171225880 171226131 -110967533 - MIR SINE MIR 0 262 8 396 145 108 0 chr1 171226381 171226464 -110967200 + MER94 DNA DNA 2 93 -41 611 13 0 0 chr1 171226565 171226640 -110967024 + L1PA3 LINE L1 6079 6153 -2 43175 46 6 1 chr1 171227139 171232757 -110960907 + L1P2 LINE L1 1 5640 -515 1215 158 8 2 chr1 171232857 171236524 -110957140 - ALR/Alpha Satellite centromeric 0 3690 1 919 172 12 4 chr1 171236536 171237140 -110956524 - ALR/Alpha Satellite centromeric 0 608 1 1140 164 5 1 chr1 171237162 171238911 -110954753 - ALR/Alpha Satellite centromeric 0 1757 1 2320 108 7 3 chr1 171438972 171439278 -110754386 - AluSq SINE Alu -1 312 6 1537 184 62 17 chr1 171439561 171439849 -110753815 - AluJo SINE Alu -7 305 5 1967 150 19 3 chr1 171440278 171440585 -110753079 - AluSx SINE Alu 0 312 1 223 328 0 0 chr1 171440813 171440874 -110752790 + MIR SINE MIR 93 153 -55 506 200 33 33 chr1 171440874 171440994 -110752670 + AluSq/x SINE Alu 2 121 -192 811 130 23 15 chr1 171441609 171441740 -110751924 - AluSq/x SINE Alu -181 132 1 1009 175 6 0 chr1 171441769 171441929 -110751735 + AluSg/x SINE Alu 132 292 -20 1909 176 0 7 chr1 171441975 171442277 -110751387 - AluJo SINE Alu -12 300 1 2188 100 0 0 chr1 171442620 171442891 -110750773 - AluSx SINE Alu -37 275 5 1818 125 8 4 chr1 171443025 171443281 -110750383 + AluSq SINE Alu 1 257 -56 658 138 0 0 chr1 171443739 171443833 -110749831 - AluJ/FLAM SINE Alu -216 96 3 2367 101 7 0 chr1 171443910 171444216 -110749448 + AluSx SINE Alu 1 308 -4 980 127 0 8 chr1 171444216 171444350 -110749314 + AluJb SINE Alu 1 133 -179 2442 80 0 0 chr1 171444354 171444653 -110749011 + AluSg SINE Alu 1 299 -11 398 267 29 0 chr1 171444923 171445028 -110748636 - MIR SINE MIR -77 185 78 221 283 0 0 chr1 171445627 171445680 -110747984 - MIR3 SINE MIR -10 198 146 2110 105 14 7 chr1 171445680 171445975 -110747689 - AluSg SINE Alu -12 298 2 186 43 0 0 chr1 171445981 171446004 -110747660 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1920 120 25 0 chr1 171446015 171446291 -110747373 - AluSx SINE Alu -29 283 1 1441 140 8 24 chr1 171446360 171446610 -110747054 - AluSx SINE Alu -20 292 47 290 343 48 0 chr1 171448715 171448861 -110744803 - MIR3 SINE MIR 0 208 56 2487 73 10 0 chr1 171450032 171450333 -110743331 + AluY SINE Alu 1 304 -7 2035 117 7 7 chr1 171450636 171450917 -110742747 + AluSx SINE Alu 1 281 -31 295 83 21 21 chr1 171451043 171451091 -110742573 - AluSx SINE Alu -259 49 2 191 291 221 0 chr1 171451115 171451201 -110742463 - MIR SINE MIR -83 125 21 2280 113 3 0 chr1 171451328 171451628 -110742036 - AluSx SINE Alu -11 301 1 2151 125 3 3 chr1 171451630 171451925 -110741739 - AluSx SINE Alu -17 295 1 1296 121 58 5 chr1 171452909 171453116 -110740548 + AluJb SINE Alu 11 228 -84 221 174 0 22 chr1 171453136 171453182 -110740482 + GA-rich Low_complexity Low_complexity 2 46 0 915 128 0 39 chr1 171454002 171454158 -110739506 + AluSp/q SINE Alu 158 307 -6 603 201 188 17 chr1 171454167 171454269 -110739395 - Charlie1 DNA MER1_type -217 2544 2461 2153 128 0 7 chr1 171454269 171454573 -110739091 - AluSx SINE Alu -8 304 3 603 201 188 17 chr1 171454573 171454704 -110738960 - Charlie1 DNA MER1_type -300 2461 2271 2492 103 0 0 chr1 171454705 171455015 -110738649 - AluSx SINE Alu -2 310 1 2385 91 0 25 chr1 171455028 171455347 -110738317 - AluY SINE Alu 0 311 1 1648 156 0 0 chr1 171455381 171455618 -110738046 + AluJo SINE Alu 50 286 -26 2180 83 9 58 chr1 171456029 171456354 -110737310 - AluSx SINE Alu -3 309 1 1655 122 37 48 chr1 171456847 171457142 -110736522 + AluJb SINE Alu 1 292 -20 2149 103 0 3 chr1 171457144 171457426 -110736238 + AluSq SINE Alu 1 281 -32 207 0 0 0 chr1 171457426 171457449 -110736215 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 215 232 0 0 chr1 171457474 171457530 -110736134 + T-rich Low_complexity Low_complexity 1 56 0 1550 172 18 25 chr1 171457596 171457875 -110735789 - AluJo SINE Alu -8 304 28 181 333 0 0 chr1 171457979 171458030 -110735634 + MIR SINE MIR 212 262 0 1746 150 34 20 chr1 171458223 171458516 -110735148 - AluJb SINE Alu -15 297 1 454 299 57 6 chr1 171458575 171458732 -110734932 + MIR SINE MIR 3 167 -95 2263 138 0 0 chr1 171458992 171459303 -110734361 + AluSx SINE Alu 1 311 -1 683 103 0 86 chr1 171459323 171459439 -110734225 + AluJo SINE Alu 27 132 -180 994 84 0 15 chr1 171459459 171459590 -110734074 + AluSq/x SINE Alu 1 129 -183 192 359 11 33 chr1 171459884 171459976 -110733688 - L2 LINE L2 -670 2644 2555 870 239 0 0 chr1 171460072 171460248 -110733416 + FRAM SINE Alu 1 174 -2 1948 166 3 3 chr1 171460313 171460615 -110733049 + AluSx SINE Alu 1 302 -10 240 293 0 0 chr1 171460615 171460673 -110732991 + MIR3 SINE MIR 142 199 -9 2021 108 42 10 chr1 171461095 171461383 -110732281 - AluSx SINE Alu -15 297 1 2055 127 17 17 chr1 171461473 171461773 -110731891 - AluSq SINE Alu -13 300 1 205 327 105 38 chr1 171461956 171462222 -110731442 + L2 LINE L2 2573 2856 -458 1150 168 0 0 chr1 171462613 171462786 -110730878 + AluJb SINE Alu 125 297 -15 1613 203 47 19 chr1 171462835 171463199 -110730465 + Charlie1a DNA MER1_type 9 382 -1073 1976 140 10 7 chr1 171463199 171463492 -110730172 - AluJb SINE Alu -18 294 1 296 103 0 0 chr1 171463567 171463606 -110730058 - Alu SINE Alu -257 44 6 409 220 55 0 chr1 171463613 171463704 -110729960 + Charlie1a DNA MER1_type 373 468 -987 2087 83 14 42 chr1 171463704 171463993 -110729671 + AluY SINE Alu 1 281 -30 26 0 0 0 chr1 171464374 171464400 -110729264 + AT_rich Low_complexity Low_complexity 1 26 0 2179 116 10 3 chr1 171465188 171465482 -110728182 - AluSx SINE Alu -16 296 1 1359 175 0 12 chr1 171465532 171465772 -110727892 - AluSx SINE Alu -12 300 64 2298 104 0 3 chr1 171466120 171466419 -110727245 - AluSc SINE Alu -11 298 1 272 158 0 105 chr1 171466658 171466734 -110726930 - FLAM_A SINE Alu 0 133 66 2300 70 30 0 chr1 171466734 171467032 -110726632 + AluY SINE Alu 1 307 -4 2225 121 0 0 chr1 171467061 171467366 -110726298 - AluSg SINE Alu -5 305 1 1572 138 0 0 chr1 171467366 171467590 -110726074 - AluSc SINE Alu -4 305 82 2467 90 0 0 chr1 171467597 171467898 -110725766 - AluSx SINE Alu -11 301 1 2142 111 3 7 chr1 171468100 171468398 -110725266 + AluSx SINE Alu 1 297 -15 1051 172 30 63 chr1 171468687 171468955 -110724709 + AluJb SINE Alu 1 259 -53 447 115 16 0 chr1 171469699 171469760 -110723904 - AluS SINE Alu -255 63 2 235 300 100 27 chr1 171470436 171470546 -110723118 - MIR SINE MIR -56 152 35 2323 54 41 3 chr1 171472868 171473162 -110720502 + AluSq SINE Alu 1 305 -8 1013 154 6 0 chr1 171473167 171473323 -110720341 + FRAM SINE Alu 1 155 -21 387 0 0 0 chr1 171473323 171473366 -110720298 + (CA)n Simple_repeat Simple_repeat 2 44 0 222 266 0 31 chr1 171473732 171473796 -110719868 + GA-rich Low_complexity Low_complexity 1 62 0 459 135 14 0 chr1 171476477 171476551 -110717113 - MER20 DNA MER1_type -142 77 3 180 280 136 64 chr1 171476907 171477032 -110716632 - MER5B DNA MER1_type -22 156 23 249 33 0 0 chr1 171477247 171477277 -110716387 + (T)n Simple_repeat Simple_repeat 1 30 0 446 211 303 0 chr1 171478573 171478715 -110714949 + MIR SINE MIR 12 196 -66 1570 165 94 0 chr1 171478838 171479104 -110714560 + AluJo SINE Alu 1 291 -21 824 108 0 0 chr1 171479117 171479219 -110714445 + FLAM_C SINE Alu 5 106 -37 329 235 133 20 chr1 171480101 171480199 -110713465 - MIR SINE MIR -56 152 44 2446 50 7 10 chr1 171480200 171480501 -110713163 + AluSc SINE Alu 1 300 -9 2337 66 42 0 chr1 171481881 171482169 -110711495 - AluY SINE Alu -9 302 3 2363 75 7 19 chr1 171482170 171482478 -110711186 - AluSg SINE Alu -6 304 1 1635 143 4 43 chr1 171482705 171482984 -110710680 + AluJb SINE Alu 1 268 -44 576 246 73 109 chr1 171483065 171483175 -110710489 - MIR SINE MIR -20 242 142 2204 134 0 0 chr1 171483175 171483481 -110710183 + AluJb SINE Alu 1 306 -6 576 246 73 109 chr1 171483481 171483590 -110710074 - MIR SINE MIR -120 142 31 365 312 94 72 chr1 171484730 171484770 -110708894 + L2 LINE L2 2708 2746 -526 1910 164 0 7 chr1 171484770 171485074 -110708590 + AluSx SINE Alu 1 302 -10 365 312 94 72 chr1 171485074 171485600 -110708064 + L2 LINE L2 2746 3270 -2 2202 125 3 0 chr1 171486427 171486730 -110706934 - AluJb SINE Alu -8 304 1 2402 101 3 0 chr1 171486793 171487099 -110706565 - AluSq SINE Alu -1 312 6 2373 97 0 10 chr1 171487653 171487953 -110705711 - AluSx SINE Alu -15 297 1 1895 107 76 0 chr1 171488029 171488291 -110705373 + AluSx SINE Alu 1 282 -30 2379 96 3 0 chr1 171488331 171488634 -110705030 + AluSq SINE Alu 6 309 -4 226 190 13 127 chr1 171488776 171488855 -110704809 - Tigger5 DNA MER2_type -12 2311 2242 * 229 100 0 0 chr1 171488826 171488856 -110704808 + Tigger5 DNA MER2_type 2294 2323 0 291 209 35 0 chr1 171489045 171489131 -110704533 + (TA)n Simple_repeat Simple_repeat 1 89 0 1220 155 71 18 chr1 171489865 171490091 -110703573 + AluJb SINE Alu 64 301 -11 24 63 0 16 chr1 171490093 171490125 -110703539 + AT_rich Low_complexity Low_complexity 1 33 -29 731 176 0 8 chr1 171490125 171490244 -110703420 + FLAM_C SINE Alu 1 118 -15 24 63 0 16 chr1 171490244 171490274 -110703390 + AT_rich Low_complexity Low_complexity 33 62 0 2537 76 0 0 chr1 171490274 171490578 -110703086 + AluSc SINE Alu 1 304 -5 1477 161 23 69 chr1 171490588 171490893 -110702771 + AluJo SINE Alu 1 291 -21 2029 117 7 14 chr1 171490902 171491183 -110702481 + AluSg SINE Alu 1 279 -31 252 0 0 0 chr1 171491183 171491211 -110702453 + (T)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr1 171491255 171491283 -110702381 + AT_rich Low_complexity Low_complexity 1 28 0 1073 92 0 0 chr1 171491289 171491420 -110702244 + AluSq/x SINE Alu 1 131 -182 1875 109 0 23 chr1 171491568 171491879 -110701785 - AluSg SINE Alu 0 325 21 183 336 99 30 chr1 171492217 171492348 -110701316 - L2 LINE L2 -16 3297 3158 2213 99 0 20 chr1 171492367 171492670 -110700994 + AluSx SINE Alu 1 297 -15 854 174 0 7 chr1 171492821 171492965 -110700699 + FLAM_C SINE Alu 1 143 0 2080 84 56 11 chr1 171493606 171493892 -110699772 - AluSq SINE Alu -14 299 1 2261 95 0 83 chr1 171496469 171496807 -110696857 + AluSp SINE Alu 1 310 -3 427 204 124 9 chr1 171497601 171497714 -110695950 - MIR3 SINE MIR -41 167 42 2200 85 58 3 chr1 171499121 171499416 -110694248 + AluY SINE Alu 1 311 0 1936 105 24 90 chr1 171499461 171499794 -110693870 + AluSx SINE Alu 1 311 -1 965 108 14 20 chr1 171500136 171500284 -110693380 + AluY SINE Alu 157 303 -8 438 186 0 0 chr1 171500291 171500361 -110693303 - FRAM/FAM SINE Alu -107 69 1 2197 89 11 0 chr1 171500927 171501239 -110692425 + AluSq SINE Alu 1 315 0 1036 151 0 0 chr1 171501239 171501420 -110692244 + AluSg/x SINE Alu 132 312 0 732 269 206 13 chr1 171501454 171501732 -110691932 - L2 LINE L2 -202 3070 2847 1452 184 92 3 chr1 171501732 171501843 -110691821 + AluJb SINE Alu 1 101 -211 378 107 0 0 chr1 171501843 171501899 -110691765 + (CA)n Simple_repeat Simple_repeat 2 57 0 1452 184 92 3 chr1 171501899 171502070 -110691594 + AluJb SINE Alu 101 308 -4 732 269 206 13 chr1 171502070 171502238 -110691426 - L2 LINE L2 -425 2847 2517 1711 86 0 5 chr1 171502560 171502770 -110690894 + AluSq SINE Alu 1 209 -104 216 97 0 0 chr1 171502780 171502811 -110690853 + (A)n Simple_repeat Simple_repeat 1 31 0 594 100 0 0 chr1 171503170 171503250 -110690414 - AluSp/q SINE Alu -13 300 221 335 40 20 0 chr1 171503355 171503405 -110690259 + AluSp/q SINE Alu 249 299 -4 576 265 139 6 chr1 171503526 171503692 -110689972 + MIR SINE MIR 63 250 -12 2214 123 0 7 chr1 171504631 171504932 -110688732 - AluSx SINE Alu -13 299 1 285 29 0 0 chr1 171504963 171504997 -110688667 + (TG)n Simple_repeat Simple_repeat 1 34 0 237 33 0 0 chr1 171504996 171505026 -110688638 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1643 167 53 8 chr1 171505028 171505292 -110688372 - AluJb SINE Alu -36 276 1 21 71 0 0 chr1 171505301 171505343 -110688321 + AT_rich Low_complexity Low_complexity 1 42 0 242 306 18 18 chr1 171506378 171506489 -110687175 + GA-rich Low_complexity Low_complexity 1 111 0 2103 141 3 0 chr1 171506519 171506816 -110686848 + AluJb SINE Alu 9 306 -6 1781 135 0 83 chr1 171507056 171507382 -110686282 - AluJb SINE Alu -13 299 1 1217 106 18 0 chr1 171510112 171510282 -110683382 + AluSg/x SINE Alu 126 298 -14 369 239 101 82 chr1 171510800 171510959 -110682705 - MIR3 SINE MIR -10 198 37 1890 91 0 8 chr1 171511517 171511759 -110681905 - AluSq SINE Alu -19 294 55 2376 78 3 23 chr1 171511816 171512122 -110681542 - AluSg SINE Alu -9 301 2 2546 73 0 0 chr1 171512282 171512585 -110681079 - AluSg SINE Alu -6 304 2 640 309 29 83 chr1 171512591 171513170 -110680494 + L2 LINE L2 2468 3022 -250 675 137 0 0 chr1 171513170 171513272 -110680392 + U6 snRNA snRNA 1 102 -5 35 0 0 0 chr1 171513272 171513307 -110680357 + AT_rich Low_complexity Low_complexity 1 35 0 2464 50 13 7 chr1 171513307 171513606 -110680058 + AluY SINE Alu 1 301 -10 2285 94 13 3 chr1 171513613 171513912 -110679752 + AluSq SINE Alu 1 302 -11 593 167 83 33 chr1 171513932 171514052 -110679612 + FRAM SINE Alu 35 160 -16 984 84 0 0 chr1 171514058 171514177 -110679487 + AluSq/x SINE Alu 6 124 -188 207 0 0 0 chr1 171514177 171514200 -110679464 + (CA)n Simple_repeat Simple_repeat 2 24 0 705 115 10 0 chr1 171514207 171514311 -110679353 + AluSp/q SINE Alu 205 309 -4 1484 161 27 15 chr1 171514425 171514686 -110678978 - AluJb SINE Alu -47 265 2 2368 92 0 0 chr1 171514909 171515201 -110678463 - AluSx SINE Alu -20 292 1 392 321 58 37 chr1 171515856 171516046 -110677618 - MIR SINE MIR -61 201 8 1328 165 116 21 chr1 171516208 171516493 -110677171 - AluJb SINE Alu 0 312 1 1652 66 5 0 chr1 171516889 171517085 -110676579 - AluSp SINE Alu -116 197 1 2308 112 0 3 chr1 171517162 171517467 -110676197 + AluSq SINE Alu 1 304 -9 324 226 49 49 chr1 171517525 171517627 -110676037 - MIR SINE MIR -18 244 143 1703 167 39 0 chr1 171517717 171517999 -110675665 - AluSx SINE Alu -19 293 1 1085 125 6 6 chr1 171518157 171518317 -110675347 - AluJb SINE Alu -19 293 134 2531 80 0 0 chr1 171518317 171518618 -110675046 - AluSg SINE Alu -9 301 1 1292 120 0 93 chr1 171518619 171518952 -110674712 - AluSx SINE Alu -10 302 1 2398 78 0 3 chr1 171520008 171520302 -110673362 + AluSc SINE Alu 3 295 -14 406 208 85 15 chr1 171520474 171520604 -110673060 + L1ME3A LINE L1 6021 6159 -11 1847 171 3 10 chr1 171520734 171521032 -110672632 + AluJb SINE Alu 1 296 -16 1356 107 34 0 chr1 171521032 171521209 -110672455 + AluSx SINE Alu 40 222 -90 1017 177 0 18 chr1 171521605 171521769 -110671895 - FRAM SINE Alu -5 161 1 2172 112 14 0 chr1 171521806 171522100 -110671564 + AluSp SINE Alu 1 298 -15 2146 117 3 28 chr1 171522216 171522394 -110671270 - AluJb SINE Alu -3 309 128 2544 76 0 0 chr1 171522394 171522695 -110670969 - AluSg SINE Alu -9 301 1 2233 88 10 20 chr1 171522696 171523001 -110670663 - AluSx SINE Alu -10 302 1 2146 117 3 28 chr1 171523001 171523137 -110670527 - AluJb SINE Alu -183 129 1 1052 110 52 12 chr1 171523137 171523310 -110670354 - MER20 DNA MER1_type -39 180 1 2455 74 0 0 chr1 171523768 171524064 -110669600 + AluY SINE Alu 1 296 -15 526 194 115 61 chr1 171524892 171524985 -110668679 + MIR SINE MIR 40 126 -136 2110 99 38 7 chr1 171524985 171525278 -110668386 + AluSx SINE Alu 1 302 -10 526 194 115 61 chr1 171525278 171525349 -110668315 + MIR SINE MIR 126 213 -49 523 170 85 9 chr1 171525591 171525697 -110667967 + MER94 DNA DNA 3 116 -18 2471 78 0 0 chr1 171525973 171526266 -110667398 + AluSc SINE Alu 1 293 -16 23 0 0 0 chr1 171526266 171526289 -110667375 + AT_rich Low_complexity Low_complexity 1 23 0 2115 112 60 0 chr1 171527094 171527379 -110666285 + AluSx SINE Alu 1 302 -10 1514 181 72 7 chr1 171527668 171527960 -110665704 + AluJb SINE Alu 1 311 -1 196 278 156 28 chr1 171529902 171530082 -110663582 + L2 LINE L2 2326 2528 -786 2373 96 0 0 chr1 171530524 171530826 -110662838 - AluSc SINE Alu -5 304 3 2357 105 3 3 chr1 171532568 171532881 -110660783 - AluSq SINE Alu 0 313 1 207 170 64 0 chr1 171532962 171533009 -110660655 + GA-rich Low_complexity Low_complexity 1 50 0 1985 134 0 3 chr1 171533257 171533589 -110660075 - AluSx SINE Alu 0 331 1 2382 100 3 3 chr1 171533814 171534123 -110659541 + AluSp SINE Alu 1 309 -4 699 139 9 17 chr1 171534328 171534443 -110659221 + FLAM_C SINE Alu 3 116 -27 22 70 0 0 chr1 171534445 171534488 -110659176 + AT_rich Low_complexity Low_complexity 1 43 0 225 290 0 14 chr1 171534979 171535048 -110658616 + CT-rich Low_complexity Low_complexity 1 68 0 501 272 56 6 chr1 171536475 171536637 -110657027 + MIR3 SINE MIR 36 205 -3 1615 153 0 48 chr1 171536960 171537254 -110656410 + AluJo SINE Alu 15 294 -18 333 162 319 0 chr1 171537805 171537896 -110655768 + AluSp SINE Alu 121 181 -122 395 169 110 110 chr1 171538232 171538386 -110655278 + L2 LINE L2 3160 3313 0 1206 294 45 9 chr1 171538734 171539067 -110654597 - MLT1I LTR MaLR -5 404 60 2252 78 0 7 chr1 171539383 171539676 -110653988 + AluY SINE Alu 3 293 -18 2175 88 7 3 chr1 171541193 171541488 -110652176 + AluSq SINE Alu 1 296 -17 2217 111 7 0 chr1 171541608 171541915 -110651749 - AluSx SINE Alu -3 309 1 285 29 0 0 chr1 171541960 171541994 -110651670 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2231 96 0 0 chr1 171542933 171543224 -110650440 - AluSg SINE Alu -19 291 1 2327 93 3 0 chr1 171544102 171544414 -110649250 + AluSq SINE Alu 1 313 0 1945 121 7 4 chr1 171544426 171544730 -110648934 + AluSx SINE Alu 1 305 0 1473 142 9 0 chr1 171545240 171545466 -110648198 - AluSx SINE Alu -39 273 46 2021 131 3 0 chr1 171545480 171545771 -110647893 - AluSx SINE Alu -20 292 1 2338 90 0 0 chr1 171545972 171546273 -110647391 + AluSx SINE Alu 1 301 -11 1517 134 0 0 chr1 171546280 171546504 -110647160 + AluSc SINE Alu 82 305 -4 2246 100 0 0 chr1 171546504 171546814 -110646850 + AluSg SINE Alu 1 310 0 2105 83 3 29 chr1 171546834 171547181 -110646483 - AluY SINE Alu 0 311 1 563 203 21 35 chr1 171547189 171547332 -110646332 - AluSg/x SINE Alu -18 294 154 925 179 7 0 chr1 171547446 171547597 -110646067 + AluJb SINE Alu 145 296 -16 1605 160 17 15 chr1 171548285 171548662 -110645002 + L1M4 LINE L1 5060 5441 -743 2052 89 10 10 chr1 171548662 171548955 -110644709 + AluSc SINE Alu 1 293 -16 1962 142 69 53 chr1 171548961 171549524 -110644140 + L1MB8 LINE L1 5260 5831 -347 1108 153 5 24 chr1 171549525 171549734 -110643930 + AluSx SINE Alu 1 205 -107 237 83 0 0 chr1 171552431 171552467 -110641197 + (A)n Simple_repeat Simple_repeat 1 36 0 396 121 15 0 chr1 171552473 171552539 -110641125 + U4 snRNA snRNA 4 70 -75 2049 71 0 39 chr1 171552577 171552887 -110640777 - AluY SINE Alu -13 298 1 2237 99 0 0 chr1 171555763 171556055 -110637609 - AluSc SINE Alu -12 297 6 928 169 7 7 chr1 171557671 171557825 -110635839 - FRAM SINE Alu -11 155 2 1823 135 0 28 chr1 171559931 171560240 -110633424 + AluJb SINE Alu 1 301 0 1307 83 0 0 chr1 171560741 171560909 -110632755 - AluSg/x SINE Alu -18 292 125 675 256 103 0 chr1 171560927 171561130 -110632534 - MIR SINE MIR -17 245 22 21 36 0 0 chr1 171561206 171561234 -110632430 + AT_rich Low_complexity Low_complexity 1 28 0 2166 73 35 0 chr1 171561460 171561749 -110631915 + AluSg SINE Alu 1 299 -11 2195 107 0 13 chr1 171561959 171562268 -110631396 + AluSx SINE Alu 1 305 -7 1176 141 0 0 chr1 171562585 171562755 -110630909 + AluSx SINE Alu 1 170 -142 1567 109 16 4 chr1 171562877 171563124 -110630540 + AluSx SINE Alu 63 312 0 231 36 0 0 chr1 171563196 171563224 -110630440 + (TA)n Simple_repeat Simple_repeat 2 29 0 1889 122 47 3 chr1 171563292 171563588 -110630076 - AluSx SINE Alu -3 309 1 988 178 0 0 chr1 171563615 171563778 -110629886 + AluSg/x SINE Alu 128 290 -20 1792 176 0 7 chr1 171563824 171564126 -110629538 - AluJo SINE Alu -12 300 1 2070 100 0 0 chr1 171564469 171564740 -110628924 - AluSx SINE Alu -37 275 5 1977 103 7 30 chr1 171564881 171565182 -110628482 + AluSq SINE Alu 6 299 -14 544 287 122 17 chr1 171565305 171565486 -110628178 + MIR SINE MIR 63 262 0 2137 124 0 0 chr1 171566411 171566710 -110626954 - AluSx SINE Alu -13 299 1 267 31 0 0 chr1 171566741 171566773 -110626891 + (TG)n Simple_repeat Simple_repeat 1 32 0 237 33 0 0 chr1 171566772 171566802 -110626862 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1541 167 53 8 chr1 171566804 171567068 -110626596 - AluJb SINE Alu -36 276 1 21 71 0 0 chr1 171567077 171567119 -110626545 + AT_rich Low_complexity Low_complexity 1 42 0 242 306 18 18 chr1 171568154 171568265 -110625399 + GA-rich Low_complexity Low_complexity 1 111 0 1757 142 17 7 chr1 171568288 171568577 -110625087 + AluJo SINE Alu 1 292 -20 252 0 0 0 chr1 171568933 171568961 -110624703 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr1 171568960 171568986 -110624678 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1349 194 0 35 chr1 171568991 171569274 -110624390 - AluJb SINE Alu -39 273 1 630 284 85 42 chr1 171570389 171570625 -110623039 + MIR SINE MIR 7 252 -10 396 53 18 0 chr1 171573173 171573230 -110620434 + L1PB2 LINE L1 6085 6142 -9 234 0 0 0 chr1 171573237 171573263 -110620401 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2263 68 3 16 chr1 171573271 171573578 -110620086 + AluSg SINE Alu 1 303 -7 697 256 0 11 chr1 171573625 171573744 -110619920 + MER53 DNA DNA 1 119 -70 2134 84 0 3 chr1 171573744 171574028 -110619636 - AluSg SINE Alu -19 291 9 697 256 0 11 chr1 171574028 171574099 -110619565 + MER53 DNA DNA 119 189 0 683 218 131 19 chr1 171574111 171574317 -110619347 + MIR SINE MIR 2 230 -32 264 327 117 19 chr1 171575116 171575169 -110618495 - MIR3 SINE MIR -10 198 152 2305 94 0 0 chr1 171575169 171575467 -110618197 - AluSg SINE Alu -12 298 1 264 327 117 19 chr1 171575467 171575575 -110618089 - MIR3 SINE MIR -56 152 21 2148 113 3 0 chr1 171575702 171576002 -110617662 - AluSx SINE Alu -11 301 1 2070 125 3 0 chr1 171576002 171576297 -110617367 - AluSx SINE Alu -16 296 1 1291 116 53 0 chr1 171577283 171577490 -110616174 + AluJb SINE Alu 11 228 -84 221 174 0 22 chr1 171577510 171577556 -110616108 + GA-rich Low_complexity Low_complexity 2 46 0 795 130 7 43 chr1 171578121 171578259 -110615405 - FLAM_C SINE Alu 0 133 1 2405 60 0 0 chr1 171578272 171578572 -110615092 - AluSx SINE Alu -12 300 1 188 33 0 33 chr1 171579355 171579385 -110614279 + (CGG)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr1 171579399 171579427 -110614237 + GC_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr1 171579541 171579578 -110614086 + GC_rich Low_complexity Low_complexity 1 37 0 21 89 0 0 chr1 171579654 171579710 -110613954 + GC_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr1 171579756 171579787 -110613877 + GC_rich Low_complexity Low_complexity 1 31 0 1670 135 0 83 chr1 171583336 171583662 -110610002 + AluJb SINE Alu 1 299 -13 2115 122 0 0 chr1 171583902 171584203 -110609461 - AluJb SINE Alu -9 303 9 2095 92 14 3 chr1 171584565 171584857 -110608807 - AluSg SINE Alu -15 295 1 196 224 343 0 chr1 171584886 171584953 -110608711 - MIR SINE MIR -119 143 54 23 0 0 0 chr1 171588736 171588759 -110604905 + AT_rich Low_complexity Low_complexity 1 23 0 38 22 0 0 chr1 171588847 171588892 -110604772 + AT_rich Low_complexity Low_complexity 1 45 0 1749 130 11 4 chr1 171589008 171589277 -110604387 + AluSx SINE Alu 18 288 -24 1831 136 3 29 chr1 171591673 171591983 -110601681 + AluJb SINE Alu 1 302 -10 2173 88 3 7 chr1 171592484 171592780 -110600884 - AluSx SINE Alu -17 295 1 2272 84 0 28 chr1 171593638 171593959 -110599705 - AluSx SINE Alu 0 312 1 2179 103 7 3 chr1 171594050 171594360 -110599304 - AluSp SINE Alu -2 311 1 212 179 0 0 chr1 171595388 171595427 -110598237 + (TAA)n Simple_repeat Simple_repeat 1 39 0 2123 120 3 0 chr1 171595602 171595911 -110597753 + AluY SINE Alu 2 311 0 475 79 0 0 chr1 171595950 171596013 -110597651 - AluSp/q SINE Alu -13 300 238 640 163 0 22 chr1 171596114 171596298 -110597366 + G-rich Low_complexity Low_complexity 1 180 0 315 220 0 0 chr1 171596318 171596486 -110597178 + G-rich Low_complexity Low_complexity 1 168 0 2328 65 0 0 chr1 171597329 171597636 -110596028 - AluY SINE Alu -1 310 4 1978 109 3 14 chr1 171597640 171597933 -110595731 - AluSg SINE Alu -20 290 1 2104 110 0 10 chr1 171597933 171598232 -110595432 - AluSx SINE Alu -15 297 1 771 279 90 54 chr1 171598232 171598655 -110595009 - L2 LINE L2 -25 3288 2851 1857 264 122 8 chr1 171598903 171599616 -110594048 - HAL1 LINE L1 -461 2046 1253 1207 147 0 108 chr1 171599707 171599886 -110593778 - AluJo SINE Alu -22 290 93 2344 68 0 0 chr1 171599886 171600180 -110593484 + AluY SINE Alu 1 294 -17 2079 121 0 19 chr1 171600180 171600493 -110593171 - AluSx SINE Alu -5 307 1 1973 124 7 7 chr1 171600498 171600796 -110592868 - AluSq SINE Alu -15 298 1 1207 147 0 108 chr1 171600796 171600888 -110592776 - AluJo SINE Alu -222 90 42 1669 266 91 49 chr1 171600888 171601128 -110592536 + L2 LINE L2 2056 2284 -1030 2258 61 10 29 chr1 171601128 171601438 -110592226 - AluSp SINE Alu -8 305 2 1669 266 91 49 chr1 171601438 171601869 -110591795 + L2 LINE L2 2284 2765 -549 2220 101 0 0 chr1 171601869 171602165 -110591499 - AluSq SINE Alu -12 301 6 1669 266 91 49 chr1 171602165 171602250 -110591414 + L2 LINE L2 2765 2845 -469 2308 67 7 3 chr1 171603786 171604085 -110589579 - AluSp SINE Alu -13 300 1 1988 128 14 0 chr1 171605018 171605307 -110588357 + AluSx SINE Alu 1 293 -19 300 83 0 0 chr1 171605418 171605466 -110588198 - MER41B LTR ERV1 -86 549 502 2157 89 3 0 chr1 171605466 171605757 -110587907 + AluSq SINE Alu 1 292 -21 1890 126 0 26 chr1 171605791 171606100 -110587564 - AluSq SINE Alu -12 301 1 1015 168 15 20 chr1 171606101 171606298 -110587366 - AluJo SINE Alu -12 300 105 2432 66 0 0 chr1 171606382 171606683 -110586981 + AluY SINE Alu 1 301 -10 2252 73 10 13 chr1 171606690 171607003 -110586661 + AluSp SINE Alu 1 312 -1 537 199 0 85 chr1 171607004 171607145 -110586519 + FLAM_C SINE Alu 1 129 -14 32 0 0 0 chr1 171607145 171607177 -110586487 + AT_rich Low_complexity Low_complexity 1 32 0 1900 141 0 0 chr1 171607181 171607479 -110586185 + AluSg1 SINE Alu 5 302 -7 312 67 22 0 chr1 171607491 171607536 -110586128 + Charlie1 DNA MER1_type 1862 1907 -854 195 42 0 0 chr1 171607536 171607560 -110586104 + (TA)n Simple_repeat Simple_repeat 1 24 0 2043 111 3 3 chr1 171607566 171607864 -110585800 - AluSx SINE Alu -14 298 1 1018 129 34 0 chr1 171607864 171607929 -110585735 - MER41-int LTR ERV1 -627 5319 5258 2312 47 0 0 chr1 171607929 171608204 -110585460 - AluY SINE Alu -13 298 24 1018 129 34 0 chr1 171608204 171608316 -110585348 - MER41-int LTR ERV1 -688 5258 5136 * 1225 102 10 51 chr1 171608295 171608492 -110585172 + MER41-int LTR ERV1 4907 5095 -851 781 127 14 28 chr1 171608493 171608635 -110585029 - AluSc SINE Alu -13 296 157 1988 128 14 0 chr1 171609530 171609819 -110583845 + AluSx SINE Alu 1 293 -19 424 118 0 66 chr1 171609930 171609978 -110583686 - MER41A LTR ERV1 -86 468 425 2236 87 3 0 chr1 171609978 171610278 -110583386 + AluSq SINE Alu 1 301 -12 424 118 0 66 chr1 171610278 171610305 -110583359 - MER41A LTR ERV1 -129 425 398 1488 194 17 7 chr1 171610305 171610599 -110583065 - AluJo SINE Alu -15 297 1 1576 189 3 17 chr1 171610758 171611060 -110582604 - AluJb SINE Alu -14 298 1 762 163 7 30 chr1 171611091 171611226 -110582438 + FLAM_C SINE Alu 2 133 0 2095 86 3 36 chr1 171611794 171612096 -110581568 + AluSp SINE Alu 1 292 -21 1641 178 11 0 chr1 171612230 171612547 -110581117 + AluJb SINE Alu 1 320 0 1913 90 80 3 chr1 171612547 171612835 -110580829 + AluSq SINE Alu 1 310 -3 404 171 66 0 chr1 171612890 171612966 -110580698 + MER66A LTR ERV1 258 338 -140 257 289 77 77 chr1 171613088 171613244 -110580420 + L2 LINE L2 1069 1224 -2090 2065 108 3 0 chr1 171614865 171615151 -110578513 - AluSx SINE Alu -25 287 1 2231 76 0 30 chr1 171616083 171616387 -110577277 - AluSc SINE Alu -14 295 1 2358 77 0 0 chr1 171616390 171616687 -110576977 - AluSg SINE Alu -13 297 1 809 128 8 16 chr1 171616711 171616836 -110576828 - AluJb SINE Alu -187 125 2 1997 110 10 10 chr1 171617374 171617533 -110576131 - AluSp SINE Alu -21 292 131 2112 118 0 0 chr1 171617533 171617829 -110575835 - AluSg SINE Alu -14 296 1 1997 110 10 10 chr1 171617829 171617961 -110575703 - AluSp SINE Alu -181 132 1 1994 130 0 7 chr1 171617963 171618263 -110575401 - AluSx SINE Alu -14 298 1 698 194 24 0 chr1 171618795 171618919 -110574745 + FLAM_A SINE Alu 1 127 -6 2048 134 10 0 chr1 171618922 171619229 -110574435 + AluSx SINE Alu 1 310 -2 239 140 0 35 chr1 171619237 171619294 -110574370 + FAM SINE Alu 125 179 0 1582 140 0 48 chr1 171619297 171619568 -110574096 + AluSq SINE Alu 2 259 -54 690 126 19 0 chr1 171619580 171619683 -110573981 - AluSc SINE Alu -52 257 153 234 51 0 0 chr1 171619683 171619722 -110573942 + Alu SINE Alu 127 165 -1 2156 92 0 16 chr1 171619745 171620048 -110573616 + AluSx SINE Alu 1 298 -14 2261 162 76 58 chr1 171620196 171620367 -110573297 - L1MB7 LINE L1 -166 6018 5851 1953 122 28 0 chr1 171620367 171620653 -110573011 - AluSg SINE Alu -16 294 1 2261 162 76 58 chr1 171620653 171620994 -110572670 - L1MB7 LINE L1 -333 5851 5497 610 207 0 17 chr1 171620994 171621110 -110572554 - FLAM_A SINE Alu -9 133 20 1883 55 43 0 chr1 171621228 171621482 -110572182 - SVA Other Other -1065 321 57 345 47 0 0 chr1 171621482 171621525 -110572139 + (AGGGGG)n Simple_repeat Simple_repeat 2 44 0 317 172 16 0 chr1 171621572 171621636 -110572028 + Charlie4a DNA MER1_type 25 89 -419 1304 226 49 72 chr1 171621636 171622193 -110571471 - MER39 LTR ERV1 0 707 1 * 1552 165 100 16 chr1 171622193 171622560 -110571104 + Charlie4a DNA MER1_type 86 483 -25 2206 111 0 0 chr1 171622629 171622927 -110570737 + AluSx SINE Alu 1 298 -14 1600 175 0 14 chr1 171623441 171623733 -110569931 - AluJo SINE Alu -23 289 2 1821 142 7 10 chr1 171624130 171624432 -110569232 - AluSx SINE Alu -11 301 1 881 177 31 52 chr1 171625205 171625397 -110568267 + AluJo SINE Alu 1 188 -124 2088 112 7 0 chr1 171625554 171625850 -110567814 - AluSp SINE Alu -15 298 1 533 105 98 0 chr1 171625958 171626244 -110567420 + (TA)n Simple_repeat Simple_repeat 1 314 0 401 276 52 0 chr1 171626254 171626370 -110567294 + L2 LINE L2 3151 3272 0 1657 155 38 41 chr1 171626715 171626892 -110566772 + MLT1C LTR MaLR 1 178 -289 1711 178 0 3 chr1 171626892 171627196 -110566468 + AluJo SINE Alu 1 303 -9 1657 155 38 41 chr1 171627196 171627334 -110566330 + MLT1C LTR MaLR 178 315 -152 465 219 57 0 chr1 171627361 171627466 -110566198 - L1MA9 LINE L1 -22 6290 6180 992 186 27 0 chr1 171627468 171627656 -110566008 - L1MA9 LINE L1 -231 6081 5889 794 172 76 0 chr1 171627659 171627804 -110565860 + MLT1C LTR MaLR 312 467 0 904 327 85 54 chr1 171627909 171629147 -110564517 - L2 LINE L2 -9 3263 1976 204 217 0 0 chr1 171629178 171629224 -110564440 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2238 92 0 0 chr1 171629525 171629818 -110563846 + AluSc SINE Alu 3 295 -14 5334 142 12 22 chr1 171630042 171630096 -110563568 + Tigger1 DNA MER2_type 1 54 -2364 715 258 0 18 chr1 171630096 171630259 -110563405 - FRAM SINE Alu -6 160 1 5334 142 12 22 chr1 171630259 171631056 -110562608 + Tigger1 DNA MER2_type 54 843 -1575 468 150 0 0 chr1 171631060 171631140 -110562524 + (CCCCG)n Simple_repeat Simple_repeat 5 84 0 1710 179 10 16 chr1 171631153 171631465 -110562199 - AluJo SINE Alu -2 310 1 397 293 162 9 chr1 171632032 171632144 -110561520 + L1ME4a LINE L1 5805 5899 -222 1879 158 3 20 chr1 171632144 171632455 -110561209 - AluJo SINE Alu -19 293 1 397 293 162 9 chr1 171632455 171632542 -110561122 + L1ME4a LINE L1 5899 5971 -150 21 0 0 0 chr1 171632542 171632563 -110561101 + AT_rich Low_complexity Low_complexity 1 21 0 2170 119 3 0 chr1 171632776 171633061 -110560603 - AluSx SINE Alu -26 286 1 1928 158 10 13 chr1 171634364 171634668 -110558996 - AluJb SINE Alu -9 303 1 1110 228 40 7 chr1 171635181 171635453 -110558211 + AluJb SINE Alu 1 281 -31 1450 89 92 60 chr1 171635898 171636247 -110557417 + SVA Other Other 507 866 -520 6716 49 3 31 chr1 171636315 171637177 -110556487 + SVA Other Other 549 1386 0 25 31 0 0 chr1 171637289 171637321 -110556343 + AT_rich Low_complexity Low_complexity 1 32 0 1427 128 34 138 chr1 171637399 171637726 -110555938 + AluJo SINE Alu 2 294 -8 29 0 0 0 chr1 171637731 171637760 -110555904 + AT_rich Low_complexity Low_complexity 1 29 0 2443 88 0 0 chr1 171637771 171638066 -110555598 + AluSq SINE Alu 1 295 -18 424 91 0 0 chr1 171638235 171638290 -110555374 + U6 snRNA snRNA 1 55 -52 22 35 0 0 chr1 171638291 171638320 -110555344 + AT_rich Low_complexity Low_complexity 1 29 0 1527 164 44 44 chr1 171638433 171638622 -110555042 - AluJo SINE Alu -4 308 117 441 0 0 0 chr1 171638622 171638671 -110554993 + (TG)n Simple_repeat Simple_repeat 2 50 0 1527 164 44 44 chr1 171638671 171638774 -110554890 - AluJo SINE Alu -194 118 16 2237 128 0 0 chr1 171638904 171639210 -110554454 + AluSx SINE Alu 1 306 -6 1488 208 24 0 chr1 171639212 171639500 -110554164 + AluJo SINE Alu 1 295 -17 2287 112 0 0 chr1 171639502 171639818 -110553846 + AluSx SINE Alu 1 312 0 191 272 99 12 chr1 171639896 171639977 -110553687 + MIR SINE MIR 52 139 -69 14709 116 18 72 chr1 171640003 171640873 -110552791 + Tigger1 DNA MER2_type 1 917 -1501 650 38 0 0 chr1 171640873 171640953 -110552711 + AluY SINE Alu 226 305 -4 14709 116 18 72 chr1 171640953 171641884 -110551780 + Tigger1 DNA MER2_type 917 1897 -521 2009 121 7 0 chr1 171641884 171642156 -110551508 - AluSg SINE Alu -12 298 25 14709 116 18 72 chr1 171642156 171642675 -110550989 + Tigger1 DNA MER2_type 1897 2443 25 2527 47 0 17 chr1 171642675 171642972 -110550692 + AluY SINE Alu 1 292 -19 14709 116 18 72 chr1 171642972 171643012 -110550652 + Tigger1 DNA MER2_type 2443 2300 -118 1672 181 10 3 chr1 171643012 171643304 -110550360 - AluJo SINE Alu -18 294 1 14709 116 18 72 chr1 171643304 171643418 -110550246 + Tigger1 DNA MER2_type 2299 2418 0 2543 86 0 0 chr1 171643706 171644019 -110549645 + AluSq SINE Alu 1 313 0 1723 116 38 69 chr1 171644619 171644758 -110548906 + AluSc SINE Alu 1 143 -166 2003 90 43 0 chr1 171644758 171645037 -110548627 + AluSg SINE Alu 1 291 -19 1723 116 38 69 chr1 171645037 171645215 -110548449 + AluSc SINE Alu 143 308 -1 2694 44 0 16 chr1 171645833 171646149 -110547515 - AluY SINE Alu 0 311 1 14427 117 18 50 chr1 171646173 171646668 -110546996 - Tigger1 DNA MER2_type -116 2302 1793 2009 121 7 0 chr1 171646668 171646940 -110546724 + AluSg SINE Alu 25 298 -12 14427 117 18 50 chr1 171646940 171647871 -110545793 - Tigger1 DNA MER2_type -625 1793 897 650 38 0 0 chr1 171647871 171647951 -110545713 - AluY SINE Alu -4 308 229 14427 117 18 50 chr1 171647951 171648821 -110544843 - Tigger1 DNA MER2_type -1521 897 1 191 272 99 12 chr1 171648847 171648928 -110544736 - MIR SINE MIR -69 139 52 2287 112 0 0 chr1 171649006 171649322 -110544342 - AluSx SINE Alu 0 312 1 1488 208 24 0 chr1 171649324 171649612 -110544052 - AluJo SINE Alu -17 295 1 2237 128 0 0 chr1 171649614 171649920 -110543744 - AluSx SINE Alu -6 306 1 722 142 0 9 chr1 171650050 171650156 -110543508 + FLAM_C SINE Alu 16 120 -23 2353 103 0 0 chr1 171650277 171650579 -110543085 - AluSx SINE Alu -10 302 1 1999 125 28 0 chr1 171650596 171650885 -110542779 - AluSx SINE Alu -15 297 1 195 229 33 33 chr1 171650999 171651060 -110542604 - L2 LINE L2 -94 3219 3159 7300 122 43 13 chr1 171651330 171651621 -110542043 - Tigger3b DNA MER2_type -1797 1231 950 2502 85 0 0 chr1 171651621 171651927 -110541737 + AluSx SINE Alu 1 306 -6 7300 122 43 13 chr1 171651927 171652829 -110540835 - Tigger3b DNA MER2_type -2078 950 2 2447 103 3 0 chr1 171652868 171653179 -110540485 - AluSp SINE Alu -1 312 1 289 221 47 23 chr1 171653398 171653484 -110540180 + L3 LINE CR1 1335 1422 -155 2205 128 0 0 chr1 171654217 171654513 -110539151 - AluSx SINE Alu -16 296 1 1086 209 68 55 chr1 171654671 171654866 -110538798 - AluJo SINE Alu 0 302 117 198 71 0 0 chr1 171654866 171654894 -110538770 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1086 209 68 55 chr1 171654894 171655012 -110538652 - AluJo SINE Alu -185 117 2 1815 144 3 66 chr1 171655013 171655332 -110538332 - AluJo SINE Alu -13 299 1 602 248 56 62 chr1 171655412 171655844 -110537820 - L1MEd LINE L1 -4881 1238 810 8143 139 18 25 chr1 171656414 171656769 -110536895 + L1MA7 LINE L1 3885 4241 -2050 1815 164 38 14 chr1 171656769 171657062 -110536602 + AluJo SINE Alu 1 300 -12 2320 119 0 0 chr1 171657062 171657372 -110536292 + AluSg SINE Alu 1 310 0 8143 139 18 25 chr1 171657372 171657613 -110536051 + L1MA7 LINE L1 4240 4481 -1810 2334 103 3 0 chr1 171657613 171657924 -110535740 + AluSp SINE Alu 1 312 -1 8143 139 18 25 chr1 171657924 171659754 -110533910 + L1MA7 LINE L1 4481 6290 -1 862 267 48 57 chr1 171659999 171660402 -110533262 + L2 LINE L2 2890 3290 -23 2290 114 0 0 chr1 171660402 171660701 -110532963 - AluSx SINE Alu -13 299 1 862 267 48 57 chr1 171660701 171660716 -110532948 + L2 LINE L2 3290 3304 -9 1743 167 17 27 chr1 171662120 171662413 -110531251 + AluJb SINE Alu 3 292 -20 255 61 0 0 chr1 171662650 171662683 -110530981 + (TG)n Simple_repeat Simple_repeat 2 34 0 456 163 42 85 chr1 171662751 171662920 -110530744 - L1M1 LINE L1 -731 5431 5256 203 0 37 0 chr1 171662920 171662947 -110530717 + (TG)n Simple_repeat Simple_repeat 2 29 0 2171 106 0 0 chr1 171662947 171663231 -110530433 - AluSg1 SINE Alu -25 284 1 456 163 42 85 chr1 171663231 171663334 -110530330 - L1M1 LINE L1 -904 5258 5188 457 280 44 53 chr1 171663683 171663931 -110529733 - L1M4 LINE L1 -1300 4846 4600 2021 147 0 13 chr1 171663931 171664237 -110529427 - AluJb SINE Alu -10 302 1 457 280 44 53 chr1 171664237 171664306 -110529358 - L1M4 LINE L1 -1546 4600 4532 990 219 39 108 chr1 171664370 171664636 -110529028 - L1MC5 LINE L1 -48 7913 7683 2145 127 0 0 chr1 171664636 171664928 -110528736 - AluSx SINE Alu -9 303 12 990 219 39 108 chr1 171664928 171665067 -110528597 - L1MC5 LINE L1 -278 7683 7536 1374 289 90 50 chr1 171665070 171666156 -110527508 - L1MC4a LINE L1 -811 6997 5868 285 233 14 0 chr1 171666296 171666369 -110527295 + LTR37A LTR ERV1 111 184 -242 2217 126 0 0 chr1 171666415 171666716 -110526948 - AluSx SINE Alu -11 301 1 304 195 221 0 chr1 171666719 171666832 -110526832 + LTR37A LTR ERV1 289 426 0 746 332 16 12 chr1 171666877 171667121 -110526543 + LTR67 LTR ERVL 17 261 -296 252 77 0 0 chr1 171667131 171667170 -110526494 + (CAG)n Simple_repeat Simple_repeat 1 39 0 2431 84 3 0 chr1 171667356 171667655 -110526009 - AluSq SINE Alu -13 300 1 246 363 0 0 chr1 171668637 171668717 -110524947 + MIR SINE MIR 59 138 -124 2682 46 3 0 chr1 171668947 171669251 -110524413 - AluY SINE Alu -6 305 1 2182 116 30 0 chr1 171669266 171669569 -110524095 - AluSx SINE Alu 0 312 1 1174 259 13 46 chr1 171669569 171670025 -110523639 + L1M4 LINE L1 2234 2674 -3472 682 206 62 0 chr1 171670030 171670176 -110523488 - FRAM SINE Alu -16 160 6 1040 195 124 39 chr1 171670182 171670520 -110523144 + L1M4 LINE L1 2675 3041 -3105 241 242 11 11 chr1 171670521 171670612 -110523052 + AluY SINE Alu 3 93 -208 2072 123 3 20 chr1 171670750 171671050 -110522614 - AluSx SINE Alu -17 295 1 377 279 49 77 chr1 171671282 171671465 -110522199 - MIR SINE MIR -32 230 53 416 255 172 78 chr1 171671523 171671657 -110522007 - MER63A DNA MER1_type -1478 210 50 1441 169 43 18 chr1 171671657 171671822 -110521842 - AluSx SINE Alu 0 321 162 2483 87 3 3 chr1 171671822 171672134 -110521530 - AluSx SINE Alu 0 312 1 1441 169 43 18 chr1 171672134 171672282 -110521382 - AluSx SINE Alu -159 162 1 416 255 172 78 chr1 171672282 171672338 -110521326 - MER63A DNA MER1_type -1638 50 1 1938 148 0 16 chr1 171672673 171672984 -110520680 + AluJb SINE Alu 1 306 -6 310 186 198 0 chr1 171673059 171673145 -110520519 + L2 LINE L2 3210 3312 -1 211 240 0 20 chr1 171673615 171673665 -110519999 - MIR SINE MIR -114 148 100 2207 88 51 0 chr1 171674050 171674344 -110519320 + AluSx SINE Alu 1 309 -3 877 211 108 0 chr1 171674609 171674822 -110518842 - MIR SINE MIR -25 237 2 250 243 32 45 chr1 171675235 171675363 -110518301 - L1ME LINE L1 -5939 131 3 627 176 30 85 chr1 171675410 171675492 -110518172 - Charlie5 DNA MER1_type 0 2585 2500 2359 100 3 0 chr1 171675492 171675803 -110517861 + AluSx SINE Alu 1 312 0 627 176 30 85 chr1 171675803 171675835 -110517829 - Charlie5 DNA MER1_type -85 2500 2468 2297 97 0 28 chr1 171675835 171676154 -110517510 + AluSg SINE Alu 1 310 0 627 176 30 85 chr1 171676154 171676237 -110517427 - Charlie5 DNA MER1_type -117 2468 2398 7662 64 23 18 chr1 171676849 171678548 -110515116 + SVA Other Other 1 1386 0 1969 139 3 7 chr1 171678601 171678895 -110514769 + AluSx SINE Alu 1 293 -19 1998 163 0 0 chr1 171679866 171680173 -110513491 - AluJb SINE Alu -5 307 1 546 185 10 53 chr1 171680478 171680610 -110513054 - MER33 DNA MER1_type -263 61 1 2064 147 0 0 chr1 171680651 171680937 -110512727 + AluJb SINE Alu 1 286 -26 200 122 41 0 chr1 171680940 171680989 -110512675 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 36 0 0 0 chr1 171680992 171681028 -110512636 + AT_rich Low_complexity Low_complexity 1 36 0 1384 162 114 11 chr1 171681046 171681318 -110512346 + AluJo SINE Alu 7 306 -6 507 256 92 0 chr1 171681558 171681722 -110511942 - MIR SINE MIR -5 257 79 2377 78 7 0 chr1 171681891 171682186 -110511478 + AluSp SINE Alu 1 297 -16 1565 112 29 4 chr1 171682658 171682899 -110510765 - AluSx SINE Alu -9 303 57 * 1833 126 48 0 chr1 171682898 171683194 -110510470 + AluSx SINE Alu 11 312 0 180 0 0 0 chr1 171684163 171684183 -110509481 + (TG)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr1 171684182 171684202 -110509462 + (GA)n Simple_repeat Simple_repeat 1 20 0 2029 86 11 39 chr1 171684203 171684482 -110509182 - AluSx SINE Alu -37 275 5 582 294 77 21 chr1 171685394 171685588 -110508076 + MLT1K LTR MaLR 27 231 -357 1819 154 38 0 chr1 171685837 171686130 -110507534 + AluJb SINE Alu 2 305 -7 2253 96 3 7 chr1 171686187 171686489 -110507175 + AluSx SINE Alu 12 312 0 2161 119 24 0 chr1 171686658 171686951 -110506713 + AluSx SINE Alu 1 300 -12 315 248 62 31 chr1 171687721 171687850 -110505814 + L2 LINE L2 2542 2674 -640 2073 142 0 3 chr1 171688187 171688483 -110505181 + AluJb SINE Alu 1 295 -17 2923 13 0 0 chr1 171688499 171688800 -110504864 + AluYb8 SINE Alu 1 304 -14 207 88 0 0 chr1 171688800 171688834 -110504830 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2923 13 0 0 chr1 171688834 171688846 -110504818 + AluYb8 SINE Alu 303 314 -4 2303 98 3 3 chr1 171688846 171689152 -110504512 + AluSq SINE Alu 1 306 -7 204 241 69 58 chr1 171689158 171689245 -110504419 - L2 LINE L2 -493 2821 2734 * 313 236 189 0 chr1 171689213 171689319 -110504345 + L2 LINE L2 3187 3312 -1 307 314 53 30 chr1 171689347 171689516 -110504148 - L2 LINE L2 -640 2674 2502 21 0 0 0 chr1 171689588 171689609 -110504055 + AT_rich Low_complexity Low_complexity 1 21 0 2262 103 0 0 chr1 171689609 171689901 -110503763 - AluSx SINE Alu -20 292 1 769 140 15 37 chr1 171689903 171690039 -110503625 - FLAM_A SINE Alu -1 141 9 3148 167 78 13 chr1 171690044 171690394 -110503270 - L1MB4 LINE L1 -347 5833 5507 198 0 0 0 chr1 171690394 171690416 -110503248 + (TTG)n Simple_repeat Simple_repeat 3 24 0 3148 167 78 13 chr1 171690416 171690747 -110502917 - L1MB4 LINE L1 -673 5507 5199 2324 100 3 0 chr1 171690747 171691048 -110502616 - AluSx SINE Alu -10 302 1 3148 167 78 13 chr1 171691048 171691581 -110502083 - L1MB4 LINE L1 -981 5199 4539 988 214 33 47 chr1 171691585 171691884 -110501780 + AluJo SINE Alu 2 296 -6 260 196 0 0 chr1 171692021 171692077 -110501587 + L2 LINE L2 3257 3312 -1 234 366 32 24 chr1 171692113 171692236 -110501428 + L2 LINE L2 3140 3263 -9 188 289 119 73 chr1 171693210 171693428 -110500236 - L2 LINE L2 -384 2930 2703 315 280 21 28 chr1 171693442 171693585 -110500079 - L2 LINE L2 -1024 2290 2149 2522 128 65 2 chr1 171694592 171694992 -110498672 + MSTB LTR MaLR 2 426 0 2427 65 7 3 chr1 171695914 171696208 -110497456 + AluY SINE Alu 1 295 -16 731 171 23 0 chr1 171696689 171696818 -110496846 + FAM SINE Alu 34 165 -20 2039 133 41 0 chr1 171697123 171697417 -110496247 - AluSx SINE Alu -6 306 1 2461 74 0 3 chr1 171697541 171697837 -110495827 - AluY SINE Alu -16 295 1 2403 88 0 0 chr1 171697999 171698294 -110495370 + AluSq SINE Alu 5 299 -14 1568 149 24 113 chr1 171698299 171698430 -110495234 + AluJo SINE Alu 1 142 -170 1692 171 17 14 chr1 171698430 171698717 -110494947 - AluJo SINE Alu -24 288 1 1568 149 24 113 chr1 171698717 171698920 -110494744 + AluJo SINE Alu 142 305 -7 433 296 39 22 chr1 171699009 171699188 -110494476 + L1ME LINE L1 5526 5707 -463 212 319 81 31 chr1 171699218 171699378 -110494286 + MIR SINE MIR 68 235 -27 617 262 169 4 chr1 171700437 171700662 -110493002 + MIR SINE MIR 1 262 0 222 348 62 0 chr1 171700712 171700824 -110492840 + L2 LINE L2 3151 3269 -3 444 266 131 86 chr1 171700859 171700929 -110492735 + L1MC/D LINE L1 5494 5559 -2249 1965 149 14 7 chr1 171700929 171701225 -110492439 + AluJb SINE Alu 1 298 -14 444 266 131 86 chr1 171701225 171701364 -110492300 + L1MC/D LINE L1 5559 5720 -2088 2309 95 13 0 chr1 171701364 171701668 -110491996 + AluSx SINE Alu 5 312 0 444 266 131 86 chr1 171701668 171701724 -110491940 + L1MC/D LINE L1 5720 5772 -2036 231 36 0 0 chr1 171702997 171703025 -110490639 + (TC)n Simple_repeat Simple_repeat 1 28 0 219 88 0 0 chr1 171703046 171703080 -110490584 + (TC)n Simple_repeat Simple_repeat 2 35 0 426 39 0 0 chr1 171703080 171703132 -110490532 + (CA)n Simple_repeat Simple_repeat 1 52 0 1829 135 4 32 chr1 171705317 171705598 -110488066 + AluSx SINE Alu 1 273 -39 22 0 0 0 chr1 171705633 171705655 -110488009 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 171706626 171706649 -110487015 + AT_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr1 171707457 171707488 -110486176 + (CA)n Simple_repeat Simple_repeat 1 31 0 810 78 0 10 chr1 171708595 171708697 -110484967 - U6 snRNA snRNA -6 101 1 423 293 15 15 chr1 171708863 171708996 -110484668 - FLAM_A SINE Alu -9 133 1 2216 86 65 0 chr1 171709633 171709924 -110483740 - AluSp SINE Alu -3 310 1 2208 90 7 26 chr1 171710551 171710861 -110482803 + AluSx SINE Alu 1 304 -8 373 213 282 21 chr1 171710951 171711139 -110482525 - L1ME4a LINE L1 -4 6117 5881 22 56 0 0 chr1 171711228 171711264 -110482400 + AT_rich Low_complexity Low_complexity 1 36 0 2405 79 0 10 chr1 171711265 171711570 -110482094 + AluY SINE Alu 1 302 -9 2392 62 13 29 chr1 171711576 171711882 -110481782 + AluY SINE Alu 1 301 -10 23 0 0 0 chr1 171713466 171713489 -110480175 + AT_rich Low_complexity Low_complexity 1 23 0 2267 105 0 16 chr1 171713524 171713830 -110479834 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr1 171714442 171714465 -110479199 + AT_rich Low_complexity Low_complexity 1 23 0 1979 135 10 3 chr1 171714467 171714770 -110478894 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr1 171714866 171714887 -110478777 + AT_rich Low_complexity Low_complexity 1 21 0 2810 172 60 76 chr1 171715197 171715948 -110477716 + L1MB7 LINE L1 5446 6184 0 1122 147 53 11 chr1 171716042 171716232 -110477432 + MER58A DNA MER1_type 27 224 0 1744 167 22 0 chr1 171716379 171716654 -110477010 + AluJb SINE Alu 1 281 -31 261 0 0 0 chr1 171716657 171716686 -110476978 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1398 134 61 9 chr1 171716879 171717110 -110476554 - Tigger2 DNA MER2_type -15 2703 2461 4021 143 40 14 chr1 171717173 171717645 -110476019 - Tigger2 DNA MER2_type -1961 757 260 1890 116 0 127 chr1 171717645 171717991 -110475673 - AluSx SINE Alu -10 302 1 4021 143 40 14 chr1 171717991 171718222 -110475442 - Tigger2 DNA MER2_type -2458 260 36 3830 180 49 5 chr1 171718235 171718908 -110474756 + MER21B LTR ERV1 58 760 -103 1346 114 0 5 chr1 171718909 171719093 -110474571 - AluSg/x SINE Alu -6 304 122 2408 68 0 7 chr1 171719551 171719846 -110473818 - AluSc SINE Alu -14 295 3 2428 76 0 0 chr1 171719848 171720139 -110473525 - AluSc SINE Alu -18 291 1 1059 150 12 6 chr1 171720449 171720622 -110473042 + AluSg/x SINE Alu 123 296 -16 830 168 0 47 chr1 171720811 171720960 -110472704 + AluJo SINE Alu 43 184 -128 885 156 52 42 chr1 171720968 171721180 -110472484 + L1MB7 LINE L1 5922 6135 -49 2185 76 7 56 chr1 171721298 171721602 -110472062 - AluSg SINE Alu -21 289 1 496 137 0 88 chr1 171721650 171721752 -110471912 + AluJ/FRAM SINE Alu 216 308 -4 25 0 0 0 chr1 171721919 171721944 -110471720 + AT_rich Low_complexity Low_complexity 1 25 0 1286 159 17 64 chr1 171722206 171722278 -110471386 - L1MB8 LINE L1 -2 6176 6102 2424 51 27 0 chr1 171722278 171722571 -110471093 - AluY SINE Alu -10 301 1 1286 159 17 64 chr1 171722571 171722793 -110470871 - L1MB8 LINE L1 -76 6102 5896 2554 74 0 3 chr1 171722793 171723103 -110470561 + AluSc SINE Alu 1 309 0 231 36 0 0 chr1 171724432 171724460 -110469204 + (TC)n Simple_repeat Simple_repeat 1 28 0 219 88 0 0 chr1 171724481 171724515 -110469149 + (TC)n Simple_repeat Simple_repeat 2 35 0 426 39 0 0 chr1 171724515 171724567 -110469097 + (CA)n Simple_repeat Simple_repeat 1 52 0 2173 112 0 35 chr1 171726752 171727044 -110466620 + AluSx SINE Alu 1 283 -29 234 0 0 0 chr1 171727044 171727070 -110466594 + (CA)n Simple_repeat Simple_repeat 1 26 0 2173 112 0 35 chr1 171727070 171727091 -110466573 + AluSx SINE Alu 283 303 -9 23 0 0 0 chr1 171728062 171728085 -110465579 + AT_rich Low_complexity Low_complexity 1 23 0 258 32 0 0 chr1 171728893 171728924 -110464740 + (CA)n Simple_repeat Simple_repeat 1 31 0 811 78 0 10 chr1 171730031 171730133 -110463531 - U6 snRNA snRNA -6 101 1 465 271 15 38 chr1 171730299 171730432 -110463232 - FLAM_A SINE Alu -12 130 1 2196 86 65 0 chr1 171731069 171731360 -110462304 - AluSp SINE Alu -3 310 1 2184 90 7 26 chr1 171731987 171732297 -110461367 + AluSx SINE Alu 1 304 -8 390 213 282 21 chr1 171732387 171732575 -110461089 - L1ME4a LINE L1 -4 6117 5881 22 56 0 0 chr1 171732664 171732700 -110460964 + AT_rich Low_complexity Low_complexity 1 36 0 2385 79 0 10 chr1 171732701 171733006 -110460658 + AluY SINE Alu 1 302 -9 2368 62 13 29 chr1 171733012 171733318 -110460346 + AluY SINE Alu 1 301 -10 23 0 0 0 chr1 171734902 171734925 -110458739 + AT_rich Low_complexity Low_complexity 1 23 0 2250 105 0 16 chr1 171734960 171735266 -110458398 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr1 171735878 171735901 -110457763 + AT_rich Low_complexity Low_complexity 1 23 0 1954 135 10 3 chr1 171735903 171736206 -110457458 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr1 171736302 171736323 -110457341 + AT_rich Low_complexity Low_complexity 1 21 0 2908 173 55 71 chr1 171736633 171737384 -110456280 + L1MB7 LINE L1 5446 6184 0 1124 147 53 11 chr1 171737478 171737668 -110455996 + MER58A DNA MER1_type 27 224 0 1729 169 22 0 chr1 171737815 171738122 -110455542 + AluJb SINE Alu 1 313 0 1404 134 61 9 chr1 171738315 171738546 -110455118 - Tigger2 DNA MER2_type -15 2703 2461 4071 143 40 14 chr1 171738609 171739081 -110454583 - Tigger2 DNA MER2_type -1961 757 260 1935 107 0 127 chr1 171739081 171739427 -110454237 - AluSx SINE Alu -10 302 1 4071 143 40 14 chr1 171739427 171739658 -110454006 - Tigger2 DNA MER2_type -2458 260 36 3822 180 49 5 chr1 171739671 171740344 -110453320 + MER21B LTR ERV1 58 760 -103 1336 114 0 5 chr1 171740345 171740529 -110453135 - AluSg/x SINE Alu -6 304 122 2383 68 0 7 chr1 171740986 171741281 -110452383 - AluSc SINE Alu -14 295 3 2404 76 0 0 chr1 171741283 171741574 -110452090 - AluSc SINE Alu -18 291 1 297 85 21 0 chr1 171741593 171741640 -110452024 - MADE1 DNA Mariner 0 80 33 261 122 0 20 chr1 171741740 171741789 -110451875 - MADE1 DNA Mariner -32 48 1 2368 91 7 3 chr1 171741992 171742301 -110451363 - AluSx SINE Alu 0 312 3 191 0 103 0 chr1 171742401 171742430 -110451234 + T-rich Low_complexity Low_complexity 2 33 0 1998 117 7 0 chr1 171742435 171742708 -110450956 - AluSx SINE Alu -37 275 1 25 0 0 0 chr1 171742772 171742797 -110450867 + AT_rich Low_complexity Low_complexity 1 25 0 486 282 0 27 chr1 171742828 171742977 -110450687 - MIR SINE MIR -27 235 91 2135 127 3 0 chr1 171743117 171743409 -110450255 + AluSc SINE Alu 1 293 -16 2158 134 0 3 chr1 171743455 171743761 -110449903 - AluSx SINE Alu -5 307 3 2272 101 3 10 chr1 171744198 171744495 -110449169 - AluSq SINE Alu -18 295 1 3385 204 98 41 chr1 171744727 171746140 -110447524 - L1ME1 LINE L1 -9 6157 4688 2039 108 43 20 chr1 171747625 171747930 -110445734 + AluSx SINE Alu 1 312 0 669 294 43 5 chr1 171748500 171748711 -110444953 - MIR SINE MIR -11 251 34 182 320 24 48 chr1 171749174 171749299 -110444365 + L2 LINE L2 3176 3297 -16 1094 174 11 5 chr1 171750171 171750355 -110443309 - MER58A DNA MER1_type 0 224 40 621 299 26 5 chr1 171750527 171750721 -110442943 - MIR SINE MIR -26 236 39 1965 135 40 0 chr1 171750771 171751067 -110442597 + AluSx SINE Alu 2 309 -3 396 302 73 54 chr1 171751389 171751470 -110442194 + MIR SINE MIR 20 98 -164 2234 103 3 22 chr1 171751470 171751789 -110441875 - AluSq SINE Alu 0 313 1 396 302 73 54 chr1 171751789 171751912 -110441752 + MIR SINE MIR 98 228 -34 1016 154 12 0 chr1 171752551 171752713 -110440951 + FAM SINE Alu 1 49 0 1257 208 32 21 chr1 171752868 171753147 -110440517 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr1 171753373 171753395 -110440269 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1672 158 39 7 chr1 171754308 171754430 -110439234 + AluJb SINE Alu 1 118 -194 226 0 0 56 chr1 171754430 171754466 -110439198 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1672 158 39 7 chr1 171754466 171754627 -110439037 + AluJb SINE Alu 118 293 -19 267 221 26 13 chr1 171756208 171756285 -110437379 + L1ME4a LINE L1 6043 6120 -1 2230 138 0 0 chr1 171757507 171757812 -110435852 + AluSx SINE Alu 1 305 -7 2190 110 0 13 chr1 171758488 171758798 -110434866 - AluSc SINE Alu -3 306 1 235 242 0 16 chr1 171759864 171759926 -110433738 + A-rich Low_complexity Low_complexity 5 65 0 251 186 0 17 chr1 171760058 171760117 -110433547 + GA-rich Low_complexity Low_complexity 3 60 0 229 293 13 0 chr1 171760125 171760200 -110433464 + A-rich Low_complexity Low_complexity 5 80 0 391 167 26 4 chr1 171761220 171761310 -110432354 - AluJ/FLAM SINE Alu -237 65 1 228 191 162 0 chr1 171761510 171761578 -110432086 - MER46C DNA MER2_type -137 201 123 256 186 0 0 chr1 171762050 171762093 -110431571 + MER5A DNA MER1_type 1 43 -146 1983 145 7 0 chr1 171762362 171762658 -110431006 - AluSx SINE Alu -14 298 1 842 216 13 7 chr1 171762688 171762841 -110430823 + FRAM SINE Alu 1 153 -23 1913 153 0 23 chr1 171762867 171763168 -110430496 + AluSx SINE Alu 1 294 -18 2353 86 0 0 chr1 171763170 171763462 -110430202 + AluSg SINE Alu 1 292 -18 3247 144 21 6 chr1 171764158 171764686 -110428978 - L1MB2 LINE L1 0 6171 5636 2271 97 13 3 chr1 171764698 171764998 -110428666 + AluSc SINE Alu 1 303 -6 2011 105 39 0 chr1 171765732 171766017 -110427647 + AluSq SINE Alu 1 296 -17 1664 180 34 10 chr1 171766085 171766380 -110427284 - AluJb SINE Alu -10 302 1 2489 83 3 0 chr1 171766470 171766782 -110426882 + AluSp SINE Alu 1 313 0 1722 155 83 0 chr1 171767052 171767329 -110426335 + AluJo SINE Alu 1 300 -12 1882 153 45 0 chr1 171767331 171767619 -110426045 + AluSx SINE Alu 1 301 -11 1085 41 0 0 chr1 171767669 171767791 -110425873 + AluSc SINE Alu 16 137 -172 6645 65 7 17 chr1 171767791 171769425 -110424239 + SVA Other Other 1 1386 0 1451 70 22 0 chr1 171769433 171769618 -110424046 + AluSc SINE Alu 118 306 -3 469 280 85 40 chr1 171769769 171769969 -110423695 + MLT1H LTR MaLR 136 344 -205 2303 99 0 0 chr1 171770547 171770841 -110422823 + AluSq SINE Alu 1 294 -19 196 267 256 0 chr1 171771133 171771223 -110422441 - L2 LINE L2 -1 3271 3159 232 296 9 37 chr1 171771421 171771529 -110422135 + L1MC4 LINE L1 7352 7456 -586 936 198 0 17 chr1 171771637 171771814 -110421850 - AluJo SINE Alu -17 295 122 1646 175 7 20 chr1 171771824 171772121 -110421543 + AluJb SINE Alu 1 293 -19 2406 96 0 0 chr1 171772123 171772426 -110421238 + AluSq SINE Alu 1 303 -10 215 193 36 60 chr1 171772427 171772510 -110421154 + GA-rich Low_complexity Low_complexity 1 81 0 710 168 0 0 chr1 171772536 171772643 -110421021 - FLAM_C SINE Alu -35 108 2 488 239 171 6 chr1 171772643 171772819 -110420845 + L1ME4a LINE L1 5623 5827 -294 2299 94 0 26 chr1 171772821 171773129 -110420535 + AluY SINE Alu 1 300 -11 1618 204 0 11 chr1 171773168 171773453 -110420211 + AluJo SINE Alu 1 282 -30 2384 84 3 3 chr1 171773707 171774015 -110419649 + AluY SINE Alu 1 308 -3 2263 109 3 6 chr1 171774029 171774342 -110419322 + AluSx SINE Alu 1 312 0 801 154 58 6 chr1 171774364 171774520 -110419144 + FRAM SINE Alu 3 166 -10 449 197 218 0 chr1 171774544 171774686 -110418978 - L1ME4a LINE L1 -3 6118 5946 329 328 26 9 chr1 171774871 171774987 -110418677 + MIR SINE MIR 6 123 -139 263 345 48 30 chr1 171775309 171775474 -110418190 + L2 LINE L2 3145 3312 -1 1769 176 0 23 chr1 171776165 171776471 -110417193 - AluJo SINE Alu -13 299 1 21 36 0 0 chr1 171776615 171776643 -110417021 + AT_rich Low_complexity Low_complexity 1 28 0 1816 164 0 39 chr1 171776893 171777205 -110416459 - AluJb SINE Alu -12 300 1 1881 158 10 0 chr1 171777276 171777567 -110416097 + AluJb SINE Alu 1 294 -18 2645 166 23 56 chr1 171777699 171777764 -110415900 + L1M3 LINE L1 5164 5230 -953 2343 104 0 0 chr1 171777764 171778063 -110415601 - AluSx SINE Alu -12 300 2 2645 166 23 56 chr1 171778063 171778122 -110415542 + L1M3 LINE L1 5230 5289 -894 2217 119 0 3 chr1 171778122 171778432 -110415232 + AluSx SINE Alu 1 309 -3 2645 166 23 56 chr1 171778432 171778775 -110414889 + L1M3 LINE L1 5289 5588 -595 553 168 97 0 chr1 171778775 171778888 -110414776 + FLAM_A SINE Alu 2 125 -8 2645 166 23 56 chr1 171778888 171779076 -110414588 + L1M3 LINE L1 5588 5781 -402 807 233 6 6 chr1 171779077 171779236 -110414428 + AluJo SINE Alu 2 160 -152 228 146 0 62 chr1 171779236 171779284 -110414380 - Alu SINE Alu -139 164 120 282 286 13 0 chr1 171779308 171779385 -110414279 + Tigger5 DNA MER2_type 1 78 -2245 1168 170 66 0 chr1 171779390 171779602 -110414062 + Tigger5 DNA MER2_type 2085 2310 -13 365 298 136 8 chr1 171779739 171780021 -110413643 - L1ME LINE L1 -395 5726 5415 904 148 0 15 chr1 171780142 171780277 -110413387 + FLAM_C SINE Alu 1 133 0 2244 99 0 0 chr1 171780335 171780618 -110413046 + AluSg SINE Alu 17 299 -11 2056 135 28 0 chr1 171780630 171780918 -110412746 + AluSx SINE Alu 1 296 -16 2187 98 47 0 chr1 171781095 171781392 -110412272 + AluSq SINE Alu 1 311 -2 1384 139 10 180 chr1 171781447 171781864 -110411800 - MER7A DNA MER2_type 0 346 3 3713 14 0 31 chr1 171781889 171782395 -110411269 + L1PA2 LINE L1 5724 6155 0 201 74 0 0 chr1 171782432 171782459 -110411205 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 171782579 171782600 -110411064 + AT_rich Low_complexity Low_complexity 1 21 0 1357 294 49 48 chr1 171782728 171783295 -110410369 + HAL1 LINE L1 2 569 -1938 1297 195 149 59 chr1 171783295 171783531 -110410133 - HAL1 LINE L1 -714 1793 1580 2339 86 0 3 chr1 171783531 171783821 -110409843 - AluSx SINE Alu -13 299 11 1297 195 149 59 chr1 171783821 171784041 -110409623 - HAL1 LINE L1 -927 1580 1296 235 140 0 40 chr1 171784219 171784269 -110409395 - L1MC4 LINE L1 -1339 6703 6656 2066 136 10 3 chr1 171784472 171784780 -110408884 + AluSx SINE Alu 1 310 -2 956 204 112 88 chr1 171784797 171785091 -110408573 + AluJo SINE Alu 2 302 0 2348 123 91 13 chr1 171785188 171785585 -110408079 + MSTA LTR MaLR 1 428 0 745 195 0 0 chr1 171785722 171785845 -110407819 + FLAM_A SINE Alu 1 123 -10 1441 180 7 65 chr1 171786083 171786168 -110407496 + AluJo SINE Alu 13 101 -211 2471 58 7 13 chr1 171786168 171786476 -110407188 + AluSc SINE Alu 1 306 -3 1441 180 7 65 chr1 171786476 171786684 -110406980 + AluJo SINE Alu 101 289 -23 2269 106 0 0 chr1 171786744 171787047 -110406617 + AluY SINE Alu 1 303 -8 1664 175 13 36 chr1 171787093 171787401 -110406263 - AluJo SINE Alu -11 301 1 667 274 16 11 chr1 171787606 171787792 -110405872 + MIR SINE MIR 6 192 -70 263 318 16 48 chr1 171787914 171788040 -110405624 - L2 LINE L2 0 3313 3192 1786 160 3 33 chr1 171788050 171788357 -110405307 - AluJb SINE Alu -14 298 1 840 107 0 57 chr1 171788443 171788583 -110405081 + FLAM_C SINE Alu 11 142 -1 1873 172 17 3 chr1 171788843 171789145 -110404519 - AluJb SINE Alu -6 306 1 1603 172 7 24 chr1 171789572 171789868 -110403796 + AluJo SINE Alu 1 291 -21 2375 56 0 17 chr1 171789895 171790212 -110403452 + AluY SINE Alu 1 312 0 1813 171 3 3 chr1 171790530 171790823 -110402841 + AluJo SINE Alu 1 293 -19 225 0 0 0 chr1 171790911 171790936 -110402728 + (A)n Simple_repeat Simple_repeat 1 25 0 1385 167 14 38 chr1 171791309 171791597 -110402067 + AluJo SINE Alu 12 292 -20 22 35 0 0 chr1 171792152 171792181 -110401483 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 171792942 171792966 -110400698 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr1 171793311 171793337 -110400327 + GC_rich Low_complexity Low_complexity 1 26 0 2435 64 3 0 chr1 171793873 171794169 -110399495 + AluSq SINE Alu 1 297 -16 2230 99 3 10 chr1 171794515 171794817 -110398847 - AluSx SINE Alu -12 300 1 1412 97 0 0 chr1 171794864 171795049 -110398615 - AluSg/x SINE Alu -1 309 125 636 253 91 0 chr1 171795084 171795270 -110398394 - MIR SINE MIR -38 224 22 21 36 0 0 chr1 171795346 171795374 -110398290 + AT_rich Low_complexity Low_complexity 1 28 0 2275 73 35 0 chr1 171795600 171795889 -110397775 + AluSg SINE Alu 1 299 -11 2304 107 0 13 chr1 171796099 171796408 -110397256 + AluSx SINE Alu 1 305 -7 2150 128 0 0 chr1 171796726 171797016 -110396648 + AluSx SINE Alu 1 290 -22 1938 143 10 10 chr1 171797287 171797595 -110396069 - AluSx SINE Alu -4 308 1 777 183 0 0 chr1 171797647 171797773 -110395891 + FLAM_A SINE Alu 1 126 -7 835 232 0 0 chr1 171798103 171798280 -110395384 - AluJo SINE Alu -14 298 122 530 72 0 0 chr1 171799539 171799608 -110394056 - HY3 scRNA scRNA -32 69 1 344 197 0 0 chr1 171799638 171799709 -110393955 + MER53 DNA DNA 2 72 -117 2242 84 28 0 chr1 171799709 171799994 -110393670 - AluSq SINE Alu -20 293 1 2155 142 0 0 chr1 171800222 171800524 -110393140 + AluSx SINE Alu 3 304 -8 2324 84 0 0 chr1 171801445 171801731 -110391933 + AluSg SINE Alu 1 286 -24 216 0 0 0 chr1 171801734 171801758 -110391906 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 270 0 0 0 chr1 171801774 171801804 -110391860 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 2250 103 0 28 chr1 171801904 171802225 -110391439 - AluSx SINE Alu 0 312 1 564 313 14 65 chr1 171802230 171802508 -110391156 + L1MC/D LINE L1 5433 5696 -2112 455 61 0 0 chr1 171802508 171802574 -110391090 + Alu SINE Alu 244 309 0 315 71 0 0 chr1 171802574 171802616 -110391048 + (TA)n Simple_repeat Simple_repeat 2 43 0 243 152 0 0 chr1 171802620 171802666 -110390998 - LTR66 LTR ERVL -171 439 394 1654 127 116 8 chr1 171802782 171803050 -110390614 - AluSg1 SINE Alu -12 297 1 2575 68 0 0 chr1 171803060 171803369 -110390295 - AluY SINE Alu -2 309 1 323 164 0 16 chr1 171803453 171803514 -110390150 - MER5A DNA MER1_type -1 188 129 1105 107 33 0 chr1 171803524 171803674 -110389990 + FAM SINE Alu 8 162 -23 351 0 0 0 chr1 171803675 171803714 -110389950 + (CA)n Simple_repeat Simple_repeat 2 40 0 398 245 75 11 chr1 171803720 171803814 -110389850 - MER5A DNA MER1_type -71 118 19 2296 102 7 0 chr1 171803891 171804195 -110389469 + AluSg SINE Alu 1 306 -4 415 208 0 0 chr1 171804648 171804750 -110388914 - FLAM_A SINE Alu 0 145 44 506 220 38 0 chr1 171805372 171805417 -110388247 + MER69 DNA AcHobo 2382 2424 -102 2275 76 10 17 chr1 171805417 171805719 -110387945 - AluSx SINE Alu -12 300 1 506 220 38 0 chr1 171805719 171805805 -110387859 + MER69 DNA AcHobo 2424 2518 -8 207 0 0 0 chr1 171805889 171805912 -110387752 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1855 126 3 48 chr1 171805912 171806205 -110387459 - AluJo SINE Alu -32 280 1 2318 66 31 0 chr1 171806331 171806617 -110387047 + AluY SINE Alu 3 297 -14 262 253 33 33 chr1 171807164 171807255 -110386409 + L2 LINE L2 2729 2819 -495 278 289 294 28 chr1 171807308 171807696 -110385968 + L3 LINE CR1 1073 1563 -14 2139 110 3 0 chr1 171807696 171808004 -110385660 - AluSp SINE Alu 0 309 1 2520 77 3 0 chr1 171808404 171808714 -110384950 - AluY SINE Alu 0 311 1 184 358 36 29 chr1 171808719 171808856 -110384808 + L2 LINE L2 2692 2829 -485 1621 272 107 45 chr1 171809474 171809724 -110383940 - L1M4 LINE L1 -1200 4946 4713 1927 158 0 16 chr1 171809724 171810040 -110383624 - AluJb SINE Alu -1 311 1 1621 272 107 45 chr1 171810040 171810661 -110383003 - L1M4 LINE L1 -1433 4713 4132 1637 197 7 3 chr1 171810661 171810960 -110382704 - AluJo SINE Alu -12 300 1 1621 272 107 45 chr1 171810960 171810982 -110382682 - L1M4 LINE L1 -2014 4132 4113 1022 47 78 0 chr1 171810982 171811111 -110382553 - MER85 DNA T2_type 0 139 1 1621 272 107 45 chr1 171811111 171811152 -110382512 - L1M4 LINE L1 -2033 4113 3952 556 111 0 71 chr1 171811175 171811274 -110382390 - FLAM_C SINE Alu -6 137 46 284 290 107 0 chr1 171811277 171811408 -110382256 - L1M4 LINE L1 -2208 3938 3794 723 260 11 92 chr1 171811532 171811771 -110381893 - L1M4 LINE L1 -3456 2690 2433 433 149 81 0 chr1 171811771 171811858 -110381806 - L1PB4 LINE L1 0 6156 6063 723 260 11 92 chr1 171811858 171811955 -110381709 - L1M4 LINE L1 -3713 2433 2330 2152 97 17 14 chr1 171811955 171812243 -110381421 + AluSx SINE Alu 1 289 -23 213 39 0 0 chr1 171812244 171812270 -110381394 + (TA)n Simple_repeat Simple_repeat 2 27 0 723 260 11 92 chr1 171812270 171812450 -110381214 - L1M4 LINE L1 -3815 2331 2213 456 266 143 98 chr1 171812469 171812531 -110381133 + LTR67 LTR ERVL 3 61 -496 2124 136 0 16 chr1 171812531 171812848 -110380816 - AluSx SINE Alu 0 312 1 456 266 143 98 chr1 171812848 171813303 -110380361 + LTR67 LTR ERVL 61 543 -14 756 254 32 57 chr1 171813350 171813629 -110380035 + MLT1K LTR MaLR 316 587 -1 202 250 0 0 chr1 171813946 171813994 -110379670 - L2 LINE L2 0 3272 3225 1635 154 18 4 chr1 171814552 171814824 -110378840 - AluJb SINE Alu -36 276 1 497 143 0 0 chr1 171815252 171815329 -110378335 - FLAM_A SINE Alu -13 129 53 2344 108 0 0 chr1 171815677 171815984 -110377680 + AluSc SINE Alu 1 307 -2 2144 67 0 70 chr1 171815999 171816345 -110377319 + AluY SINE Alu 3 327 0 1450 183 40 18 chr1 171816362 171816635 -110377029 + AluJo SINE Alu 3 281 -31 306 296 54 43 chr1 171816651 171816837 -110376827 + L1M4 LINE L1 4980 5167 -979 687 200 15 0 chr1 171816877 171817007 -110376657 + FLAM_C SINE Alu 1 132 -1 946 154 24 30 chr1 171817011 171817026 -110376638 + AluSg/x SINE Alu 134 148 -162 5254 93 1 3 chr1 171817026 171817715 -110375949 + LTR12 LTR ERV1 1 688 0 946 154 24 30 chr1 171817715 171817868 -110375796 + AluSg/x SINE Alu 148 301 -9 2170 220 50 27 chr1 171817919 171818051 -110375613 + L1MC/D LINE L1 4376 4504 -1642 1828 145 72 3 chr1 171818051 171818341 -110375323 + AluJb SINE Alu 1 310 -2 2170 220 50 27 chr1 171818341 171818833 -110374831 + L1MC/D LINE L1 4504 4881 -1265 2226 87 0 42 chr1 171818833 171819143 -110374521 + AluY SINE Alu 1 297 -14 2170 220 50 27 chr1 171819143 171819185 -110374479 + L1MC/D LINE L1 4881 4921 -1225 1992 122 0 11 chr1 171819185 171819321 -110374343 + AluSx SINE Alu 1 134 -178 2260 80 7 20 chr1 171819321 171819621 -110374043 + AluY SINE Alu 1 296 -15 1992 122 0 11 chr1 171819621 171819754 -110373910 + AluSx SINE Alu 134 267 -45 631 231 50 59 chr1 171819758 171819979 -110373685 + L1MC4a LINE L1 6007 6225 -1583 188 35 35 0 chr1 171820681 171820710 -110372954 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 2181 97 3 13 chr1 171820719 171821017 -110372647 + AluSg SINE Alu 1 295 -15 378 0 0 0 chr1 171822264 171822306 -110371358 + (CA)n Simple_repeat Simple_repeat 1 42 0 2130 138 0 7 chr1 171822342 171822647 -110371017 - AluSx SINE Alu -9 303 1 2554 54 0 0 chr1 171822910 171823204 -110370460 + AluY SINE Alu 1 294 -17 1959 148 0 10 chr1 171823215 171823529 -110370135 + AluJo SINE Alu 1 312 0 4012 166 60 32 chr1 171824376 171824906 -110368758 - L1MB8 LINE L1 -9 6169 5655 2601 56 3 0 chr1 171824906 171825209 -110368455 - AluY SINE Alu -7 304 1 1871 160 20 10 chr1 171825212 171825506 -110368158 - AluJb SINE Alu -15 297 1 4012 166 60 32 chr1 171825506 171825836 -110367828 - L1MB8 LINE L1 -524 5654 5281 1290 184 55 44 chr1 171825848 171826120 -110367544 - AluJo SINE Alu -37 275 1 342 135 33 111 chr1 171826120 171826158 -110367506 - L1MB8 LINE L1 -950 5196 5157 2183 73 7 3 chr1 171826158 171826458 -110367206 + AluSx SINE Alu 1 301 -11 342 135 33 111 chr1 171826458 171826471 -110367193 - L1MB8 LINE L1 -989 5157 5145 1620 158 14 30 chr1 171826471 171826768 -110366896 + AluJb SINE Alu 1 292 -20 342 135 33 111 chr1 171826768 171826895 -110366769 - L1MB8 LINE L1 -1001 5145 4964 2177 169 12 34 chr1 171826895 171827308 -110366356 - LOR1b LTR ERV1 0 461 58 2233 98 7 0 chr1 171827322 171827629 -110366035 - AluSx SINE Alu -2 310 2 1240 180 45 48 chr1 171827687 171827831 -110365833 - L1MB8 LINE L1 -1179 4967 4824 2036 105 0 41 chr1 171827831 171827999 -110365665 - AluSx SINE Alu -11 301 150 2259 88 0 3 chr1 171827999 171828305 -110365359 - AluY SINE Alu -6 305 1 2036 105 0 41 chr1 171828305 171828450 -110365214 - AluSx SINE Alu -162 150 1 1240 180 45 48 chr1 171828450 171828594 -110365070 - L1MB8 LINE L1 -1322 4824 4680 1985 122 10 0 chr1 171828640 171828935 -110364729 - AluSx SINE Alu -14 298 1 224 266 125 0 chr1 171830172 171830236 -110363428 + MIR SINE MIR 73 144 -64 386 211 148 37 chr1 171830256 171830393 -110363271 + MLT1B LTR MaLR 19 159 -308 * 662 179 48 12 chr1 171830391 171830540 -110363124 + MLT1B LTR MaLR 273 390 0 2248 92 3 0 chr1 171830594 171830889 -110362775 - AluSq SINE Alu -17 296 1 2136 94 3 3 chr1 171831677 171831974 -110361690 + AluSx SINE Alu 1 297 -15 1431 173 4 19 chr1 171832263 171832529 -110361135 + AluJo SINE Alu 1 262 -50 23 0 0 0 chr1 171832774 171832797 -110360867 + AT_rich Low_complexity Low_complexity 1 23 0 1818 92 58 0 chr1 171832866 171833127 -110360537 + AluY SINE Alu 3 278 -33 185 290 14 14 chr1 171834138 171834207 -110359457 - MIR SINE MIR -10 252 184 2310 81 0 0 chr1 171834971 171835267 -110358397 - AluSg SINE Alu -14 296 1 1998 121 7 0 chr1 171836022 171836329 -110357335 - AluY SINE Alu -2 309 1 189 0 0 0 chr1 171836610 171836631 -110357033 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2044 108 11 0 chr1 171836636 171836923 -110356741 - AluSq SINE Alu -23 290 1 1742 158 10 3 chr1 171838437 171838741 -110354923 - AluJb SINE Alu -2 310 5 1458 154 66 11 chr1 171838770 171839043 -110354621 - AluSg SINE Alu -22 288 1 2347 62 0 13 chr1 171839248 171839553 -110354111 + AluY SINE Alu 1 301 -10 2015 122 0 3 chr1 171841186 171841490 -110352174 - AluSx SINE Alu -9 303 1 1878 84 84 3 chr1 171842202 171842489 -110351175 + AluSq SINE Alu 1 310 -3 362 173 80 0 chr1 171842544 171842619 -110351045 + MER66B LTR ERV1 266 346 -140 257 289 77 77 chr1 171842741 171842897 -110350767 + L2 LINE L2 1069 1224 -2090 2057 109 3 0 chr1 171844521 171844806 -110348858 - AluSx SINE Alu -25 287 2 2231 76 0 30 chr1 171845738 171846042 -110347622 - AluSc SINE Alu -14 295 1 2358 77 0 0 chr1 171846045 171846342 -110347322 - AluSg SINE Alu -13 297 1 809 128 8 16 chr1 171846366 171846491 -110347173 - AluJb SINE Alu -187 125 2 1905 107 21 14 chr1 171847029 171847188 -110346476 - AluSp SINE Alu -21 292 129 2005 126 7 0 chr1 171847188 171847482 -110346182 - AluSg SINE Alu -14 296 1 1905 107 21 14 chr1 171847482 171847612 -110346052 - AluSp SINE Alu -184 129 1 1994 130 0 7 chr1 171847614 171847914 -110345750 - AluSx SINE Alu -14 298 1 698 194 24 0 chr1 171848446 171848570 -110345094 + FLAM_A SINE Alu 1 127 -6 2004 134 13 0 chr1 171848573 171848879 -110344785 + AluSx SINE Alu 1 310 -2 239 140 0 35 chr1 171848887 171848944 -110344720 + FAM SINE Alu 125 179 0 1582 140 0 48 chr1 171848946 171849217 -110344447 + AluSq SINE Alu 2 259 -54 638 146 19 0 chr1 171849229 171849332 -110344332 - AluSc SINE Alu -52 257 153 231 53 0 0 chr1 171849332 171849370 -110344294 + Alu SINE Alu 127 164 -2 2149 93 0 20 chr1 171849393 171849695 -110343969 + AluSx SINE Alu 1 296 -16 2621 153 94 59 chr1 171849698 171849964 -110343700 - L1MB7 LINE L1 -59 6125 5870 1944 123 28 0 chr1 171849964 171850249 -110343415 - AluSg SINE Alu -17 293 1 2621 153 94 59 chr1 171850249 171850590 -110343074 - L1MB7 LINE L1 -314 5870 5497 610 207 0 17 chr1 171850590 171850706 -110342958 - FLAM_A SINE Alu -9 133 20 1436 130 130 49 chr1 171850725 171851049 -110342615 - L1MB2 LINE L1 -46 6125 5776 1985 123 0 0 chr1 171851062 171851347 -110342317 - AluSx SINE Alu -20 292 8 407 197 30 17 chr1 171851373 171851499 -110342165 + FLAM_A SINE Alu 3 123 -10 558 277 153 7 chr1 171851503 171851777 -110341887 + L1ME3 LINE L1 5587 5900 -270 21 36 0 0 chr1 171851872 171851900 -110341764 + AT_rich Low_complexity Low_complexity 1 28 0 2292 62 0 10 chr1 171851918 171852208 -110341456 + AluY SINE Alu 11 297 -14 1614 263 105 36 chr1 171852238 171853076 -110340588 + L1M4b LINE L1 1324 2422 -4716 2048 121 3 0 chr1 171853076 171853373 -110340291 + AluSq SINE Alu 1 298 -15 1614 263 105 36 chr1 171853373 171853699 -110339965 + L1M4b LINE L1 2422 2724 -4414 2343 52 0 3 chr1 171853718 171854006 -110339658 - AluY SINE Alu -24 287 1 234 200 0 36 chr1 171854095 171854114 -110339550 + GA-rich Low_complexity Low_complexity 2 20 -34 2252 105 3 3 chr1 171854114 171854427 -110339237 + AluSp SINE Alu 1 313 0 234 200 0 36 chr1 171854427 171854462 -110339202 + GA-rich Low_complexity Low_complexity 20 54 0 1828 152 6 35 chr1 171854520 171854835 -110338829 + AluSx SINE Alu 1 306 -6 1700 175 0 0 chr1 171854837 171855117 -110338547 + AluJo SINE Alu 1 280 -32 225 0 0 0 chr1 171855126 171855151 -110338513 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 990 197 66 55 chr1 171855151 171855516 -110338148 + L1M4b LINE L1 3573 3941 -3016 624 189 270 21 chr1 171855504 171855737 -110337927 + L1MD3 LINE L1 7705 7995 0 * 741 213 118 23 chr1 171855719 171855940 -110337724 + L1M4b LINE L1 4303 4544 -2413 728 160 7 80 chr1 171855940 171856090 -110337574 - FLAM_C SINE Alu -3 140 2 1138 200 60 30 chr1 171856111 171856446 -110337218 + L1M4b LINE L1 4561 4905 -2052 466 93 0 40 chr1 171856447 171856522 -110337142 - AluY SINE Alu -9 303 232 222 143 0 0 chr1 171856522 171856571 -110337093 + (T)n Simple_repeat Simple_repeat 1 49 0 589 0 0 0 chr1 171856573 171856643 -110337021 - L1PA2 LINE L1 -4 6151 6082 1906 85 0 0 chr1 171856643 171856890 -110336774 - AluY SINE Alu -64 247 1 1877 161 0 3 chr1 171856912 171857216 -110336448 - AluJo SINE Alu -9 303 1 478 188 102 0 chr1 171857229 171857357 -110336307 + L1M4b LINE L1 4920 5060 -1897 1729 147 6 35 chr1 171857358 171857672 -110335992 + AluSg1 SINE Alu 1 305 -4 1860 169 0 0 chr1 171858016 171858318 -110335346 - AluJo SINE Alu -10 302 1 767 217 45 45 chr1 171858331 171858460 -110335204 + L1M4 LINE L1 4109 4240 -1906 2236 97 0 31 chr1 171858460 171858779 -110334885 + AluSg1 SINE Alu 1 309 0 767 217 45 45 chr1 171858779 171858893 -110334771 + L1M4 LINE L1 4239 4352 -1794 1785 140 0 18 chr1 171859614 171859936 -110333728 + AluSx SINE Alu 1 317 0 6089 44 27 4 chr1 171859936 171860683 -110332981 + L1PA5 LINE L1 5389 6152 -2 1454 122 0 5 chr1 171861022 171861236 -110332428 + AluSg/x SINE Alu 86 298 -14 1786 124 18 11 chr1 171861875 171862158 -110331506 + AluJo SINE Alu 6 290 -22 219 367 0 0 chr1 171862853 171862932 -110330732 + GA-rich Low_complexity Low_complexity 2 80 0 2378 39 23 7 chr1 171863465 171863771 -110329893 + AluY SINE Alu 1 311 0 1253 142 4 64 chr1 171863928 171864209 -110329455 + AluJb SINE Alu 47 310 -2 1928 79 69 17 chr1 171864260 171864551 -110329113 - AluSg SINE Alu -4 306 1 2202 90 3 13 chr1 171864555 171864866 -110328798 - AluSq SINE Alu -5 308 1 2244 103 0 0 chr1 171864875 171865185 -110328479 - AluY SINE Alu -1 310 1 992 158 178 23 chr1 171865186 171865355 -110328309 - AluSx SINE Alu 0 302 160 1713 97 39 16 chr1 171865355 171865612 -110328052 - AluSq SINE Alu 0 313 51 992 158 178 23 chr1 171865612 171865701 -110327963 - AluSx SINE Alu -142 160 4 1724 25 0 0 chr1 171865701 171865899 -110327765 - AluY SINE Alu -113 198 1 2238 88 3 0 chr1 171865899 171866196 -110327468 - AluSp SINE Alu -15 298 1 372 289 52 29 chr1 171866208 171866356 -110327308 - L1ME LINE L1 -526 5595 5441 622 248 161 49 chr1 171866356 171866723 -110326941 - MLT1I LTR MaLR -1 408 1 372 289 52 29 chr1 171866723 171866747 -110326917 - L1ME LINE L1 -680 5441 5419 974 220 88 18 chr1 171867106 171867333 -110326331 - MIR SINE MIR -9 253 11 1747 111 24 90 chr1 171867374 171867707 -110325957 - AluSx SINE Alu -1 311 1 2113 81 58 3 chr1 171867752 171868047 -110325617 - AluY SINE Alu 0 311 1 2091 102 13 13 chr1 171868050 171868363 -110325301 - AluSp SINE Alu 0 313 1 264 290 84 45 chr1 171868439 171868594 -110325070 + L2 LINE L2 2699 2859 -455 680 181 60 82 chr1 171868778 171868812 -110324852 - MER5A DNA MER1_type -11 178 145 2046 96 7 0 chr1 171868812 171869139 -110324525 - AluSg SINE Alu 0 329 1 680 181 60 82 chr1 171869139 171869285 -110324379 - MER5A DNA MER1_type -44 145 1 326 320 112 28 chr1 171869324 171869502 -110324162 + L2 LINE L2 3079 3271 -1 273 262 0 0 chr1 171869754 171869815 -110323849 + MER5A DNA MER1_type 46 106 -83 876 153 0 0 chr1 171869815 171869946 -110323718 - FLAM_A SINE Alu -2 131 1 1875 107 0 29 chr1 171870063 171870343 -110323321 - AluSx SINE Alu -40 272 1 2469 47 0 3 chr1 171870417 171870718 -110322946 - AluY SINE Alu -11 300 1 890 285 51 0 chr1 171870807 171871063 -110322601 - MER102b DNA MER1_type 0 341 73 1237 161 150 59 chr1 171871074 171871347 -110322317 - AluJo SINE Alu -4 298 1 1998 86 54 4 chr1 171871363 171871643 -110322021 - AluSx SINE Alu -18 294 1 404 119 0 0 chr1 171871744 171871803 -110321861 - Alu SINE Alu -18 294 236 508 279 60 67 chr1 171871864 171872026 -110321638 + L1MC4a LINE L1 5674 5836 -1972 2290 57 0 3 chr1 171872026 171872308 -110321356 + AluY SINE Alu 14 294 -17 508 279 60 67 chr1 171872308 171872492 -110321172 + L1MC4a LINE L1 5836 6019 -1789 2150 123 0 0 chr1 171872492 171872794 -110320870 + AluSx SINE Alu 1 302 -10 508 279 60 67 chr1 171872794 171872848 -110320816 + L1MC4a LINE L1 6019 6072 -1736 1866 113 3 3 chr1 171872887 171873170 -110320494 + AluSx SINE Alu 30 312 0 213 94 0 0 chr1 171873240 171873272 -110320392 + (TA)n Simple_repeat Simple_repeat 2 33 0 1913 97 50 30 chr1 171873341 171873641 -110320023 - AluY SINE Alu -4 307 2 1978 79 3 109 chr1 171873642 171873893 -110319771 - MER41A LTR ERV1 -227 327 51 1914 118 50 4 chr1 171873893 171874176 -110319488 + AluSx SINE Alu 1 293 -19 1476 119 133 52 chr1 171874177 171874305 -110319359 + AluY SINE Alu 1 117 -194 2653 52 0 0 chr1 171874305 171874613 -110319051 + AluY SINE Alu 1 308 -3 1476 119 133 52 chr1 171874613 171874770 -110318894 + AluY SINE Alu 117 309 -2 1978 79 3 109 chr1 171874770 171874879 -110318785 - MER41A LTR ERV1 -502 52 1 4132 81 14 3 chr1 171874879 171875450 -110318214 - MER41A-int LTR ERV1 -2 5944 5368 728 233 0 0 chr1 171875451 171875597 -110318067 - AluY SINE Alu -11 300 155 275 334 72 62 chr1 171876459 171876779 -110316885 + L2 LINE L2 2636 2958 -356 554 252 76 81 chr1 171876825 171876872 -110316792 + L1ME4a LINE L1 5508 5554 -567 2093 114 0 63 chr1 171876872 171877189 -110316475 - AluSc SINE Alu -12 297 1 554 252 76 81 chr1 171877189 171877261 -110316403 + L1ME4a LINE L1 5554 5625 -496 2193 116 0 3 chr1 171877261 171877554 -110316110 - AluSx SINE Alu -20 292 1 554 252 76 81 chr1 171877554 171877842 -110315822 + L1ME4a LINE L1 5625 5914 -207 1580 198 21 10 chr1 171877847 171878135 -110315529 + AluJo SINE Alu 1 291 -21 1680 182 28 14 chr1 171878160 171878446 -110315218 + AluJo SINE Alu 3 292 -20 2279 89 0 29 chr1 171878453 171878767 -110314897 + AluY SINE Alu 1 305 -6 218 299 75 0 chr1 171878961 171879028 -110314636 + L2 LINE L2 3180 3251 -62 401 340 42 58 chr1 171879034 171879225 -110314439 - L2 LINE L2 -3 3269 3082 3132 111 50 41 chr1 171879286 171879417 -110314247 - Tigger1 DNA MER2_type -1638 780 652 1412 150 176 8 chr1 171879417 171879449 -110314215 - AluSx SINE Alu 0 312 287 297 0 0 0 chr1 171879449 171879482 -110314182 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1412 150 176 8 chr1 171879482 171879716 -110313948 - AluSx SINE Alu -25 287 1 3132 111 50 41 chr1 171879716 171879933 -110313731 - Tigger1 DNA MER2_type -1766 652 438 2212 97 10 3 chr1 171879933 171880232 -110313432 - AluSx SINE Alu -11 301 1 3132 111 50 41 chr1 171880232 171880440 -110313224 - Tigger1 DNA MER2_type -1980 438 218 1063 173 47 47 chr1 171880440 171880654 -110313010 + AluJo SINE Alu 85 298 -14 1360 146 0 0 chr1 171880654 171880880 -110312784 - Tigger1 DNA MER2_type -2192 226 1 1298 274 127 17 chr1 171880880 171881495 -110312169 + L2 LINE L2 2551 3275 -38 442 268 18 0 chr1 171881593 171881705 -110311959 + MER81 DNA DNA 1 114 0 2341 82 3 0 chr1 171881743 171882037 -110311627 + AluSp SINE Alu 1 295 -18 301 361 9 0 chr1 171882093 171882201 -110311463 - MIR SINE MIR 0 262 154 597 284 131 9 chr1 171882735 171882964 -110310700 + MIR SINE MIR 4 260 -2 1102 178 10 20 chr1 171883038 171883087 -110310577 + AluJo SINE Alu 86 134 -178 2436 66 0 7 chr1 171883087 171883389 -110310275 + AluY SINE Alu 1 300 -11 1102 178 10 20 chr1 171883389 171883536 -110310128 + AluJo SINE Alu 134 280 -32 183 42 0 0 chr1 171883538 171883562 -110310102 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 198 328 16 0 chr1 171883596 171883660 -110310004 - L2 LINE L2 -530 2784 2720 232 314 101 18 chr1 171883671 171883840 -110309824 - L2 LINE L2 -1210 2104 1922 192 250 0 0 chr1 171884236 171884276 -110309388 - L3b LINE CR1 -6 1577 1538 2003 100 11 18 chr1 171884479 171884760 -110308904 - AluSx SINE Alu -8 304 26 1191 117 73 40 chr1 171884861 171884897 -110308767 - L1MB8 LINE L1 -247 5931 5898 2648 49 3 0 chr1 171884897 171885205 -110308459 + AluSc SINE Alu 1 309 0 1191 117 73 40 chr1 171885205 171885415 -110308249 - L1MB8 LINE L1 -280 5898 5677 23 33 0 0 chr1 171885437 171885467 -110308197 + AT_rich Low_complexity Low_complexity 1 30 0 827 136 0 0 chr1 171885628 171885746 -110307918 + FLAM_C SINE Alu 1 118 -15 29 0 0 0 chr1 171885746 171885775 -110307889 + AT_rich Low_complexity Low_complexity 1 29 0 186 317 0 0 chr1 171885830 171885871 -110307793 - L2 LINE L2 -22 3250 3210 22 70 0 0 chr1 171886225 171886268 -110307396 + AT_rich Low_complexity Low_complexity 1 43 0 1905 135 7 3 chr1 171886273 171886579 -110307085 + AluSx SINE Alu 2 308 0 185 149 43 43 chr1 171886698 171886745 -110306919 - MIR SINE MIR -148 114 68 23 0 0 0 chr1 171886925 171886948 -110306716 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 171887608 171887629 -110306035 + AT_rich Low_complexity Low_complexity 1 21 0 967 68 0 0 chr1 171887808 171887926 -110305738 - AluY SINE Alu -17 294 177 1004 281 129 37 chr1 171887981 171888510 -110305154 - L2 LINE L2 -22 3291 2668 2163 122 7 0 chr1 171888510 171888796 -110304868 + AluSx SINE Alu 1 288 -24 1004 281 129 37 chr1 171888796 171889047 -110304617 - L2 LINE L2 -645 2668 2442 212 293 73 32 chr1 171889923 171890046 -110303618 - MIR SINE MIR -56 206 79 860 257 45 16 chr1 171890276 171890521 -110303143 - MIR SINE MIR -10 252 1 450 286 16 54 chr1 171890859 171891044 -110302620 - MIR SINE MIR -1 261 84 3735 189 22 76 chr1 171891143 171892167 -110301497 - LTR5 LTR ERVK 0 969 1 25 0 0 0 chr1 171892781 171892806 -110300858 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 171892913 171892934 -110300730 + AT_rich Low_complexity Low_complexity 1 21 0 859 276 92 34 chr1 171893328 171893409 -110300255 + L1MC4a LINE L1 5431 5506 -2302 2208 122 0 0 chr1 171893409 171893703 -110299961 - AluSx SINE Alu -18 294 1 859 276 92 34 chr1 171893703 171894066 -110299598 + L1MC4a LINE L1 5506 5901 -1907 775 228 49 5 chr1 171894176 171894360 -110299304 - MIR SINE MIR 0 262 71 26 30 0 0 chr1 171894479 171894512 -110299152 + AT_rich Low_complexity Low_complexity 1 33 0 206 178 133 0 chr1 171894906 171894951 -110298713 - L3 LINE CR1 -2 1575 1525 474 261 26 0 chr1 171895131 171895246 -110298418 - L3 LINE CR1 -46 1531 1414 181 304 98 45 chr1 171895245 171895357 -110298307 + L2 LINE L2 3155 3272 0 * 2390 100 3 0 chr1 171895803 171896113 -110297551 - AluSp SINE Alu -2 311 1 2052 120 3 3 chr1 171896284 171896596 -110297068 - AluSx SINE Alu 0 312 1 1571 184 41 7 chr1 171896600 171896893 -110296771 - AluJo SINE Alu -9 303 1 221 288 0 17 chr1 171897454 171897513 -110296151 - L3 LINE CR1 0 1577 1520 409 248 113 23 chr1 171898120 171898253 -110295411 - L2 LINE L2 -1 3312 3168 6524 63 9 0 chr1 171898437 171899384 -110294280 - L1PA10 LINE L1 0 6168 5190 813 103 0 0 chr1 171899384 171899491 -110294173 - U6 snRNA snRNA 0 107 1 671 226 73 0 chr1 171899758 171899922 -110293742 - MER63B DNA MER1_type -259 177 2 1403 176 71 6 chr1 171900447 171900800 -110292864 + L1MB8 LINE L1 5705 6080 -98 408 114 25 13 chr1 171900913 171900992 -110292672 + L1MB7 LINE L1 6105 6184 0 920 194 0 0 chr1 171901004 171901174 -110292490 + FRAM SINE Alu 1 169 -7 25 0 0 0 chr1 171901589 171901614 -110292050 + AT_rich Low_complexity Low_complexity 1 25 0 2287 79 0 30 chr1 171901615 171901918 -110291746 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr1 171903874 171903896 -110289768 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 171904513 171904537 -110289127 + AT_rich Low_complexity Low_complexity 1 24 0 2325 109 0 3 chr1 171906010 171906323 -110287341 + AluSx SINE Alu 1 312 0 264 108 14 40 chr1 171907223 171907297 -110286367 + (CCCCCA)n Simple_repeat Simple_repeat 1 72 0 270 176 0 0 chr1 171907336 171907387 -110286277 + (CATA)n Simple_repeat Simple_repeat 2 52 0 31 26 0 0 chr1 171907398 171907436 -110286228 + AT_rich Low_complexity Low_complexity 1 38 0 1733 169 20 24 chr1 171908487 171908783 -110284881 + AluJb SINE Alu 1 295 -17 360 263 26 103 chr1 171909044 171909200 -110284464 - L2 LINE L2 -4 3309 3166 396 189 123 0 chr1 171909311 171909433 -110284231 + L1ME3A LINE L1 5802 5938 -232 2116 125 0 7 chr1 171909635 171909930 -110283734 - AluSx SINE Alu -2 310 18 330 177 0 27 chr1 171909930 171910021 -110283643 - Alu SINE Alu -255 47 1 1047 129 0 0 chr1 171910025 171910165 -110283499 - AluSq/x SINE Alu -170 142 3 225 329 134 48 chr1 171910383 171910631 -110283033 - L2 LINE L2 -252 3020 2752 1958 156 21 0 chr1 171910901 171911190 -110282474 + AluJo SINE Alu 4 298 -14 1808 139 39 11 chr1 171911240 171911520 -110282144 + AluSx SINE Alu 1 288 -24 2170 118 3 0 chr1 171912405 171912709 -110280955 - AluSx SINE Alu -7 305 1 621 257 140 37 chr1 171912930 171913366 -110280298 - L1ME3A LINE L1 0 6164 5682 2274 100 13 3 chr1 171913583 171913883 -110279781 - AluSq SINE Alu -10 303 1 26 0 0 0 chr1 171913990 171914016 -110279648 + AT_rich Low_complexity Low_complexity 1 26 0 1647 174 33 3 chr1 171914675 171914974 -110278690 + AluJo SINE Alu 3 310 -2 2410 101 0 0 chr1 171915006 171915304 -110278360 + AluSg SINE Alu 1 298 -12 2186 131 3 13 chr1 171915432 171915746 -110277918 - AluSx SINE Alu -1 311 1 25 31 0 0 chr1 171916179 171916211 -110277453 + AT_rich Low_complexity Low_complexity 1 32 0 2267 100 7 0 chr1 171916212 171916503 -110277161 + AluSq SINE Alu 2 294 -19 881 153 0 0 chr1 171916697 171916828 -110276836 + FLAM_C SINE Alu 1 131 -2 1898 174 36 21 chr1 171916894 171917278 -110276386 - MLT1B LTR MaLR 0 390 1 2074 128 10 10 chr1 171917452 171917628 -110276036 - AluSx SINE Alu 0 312 134 2568 33 13 0 chr1 171917628 171917927 -110275737 - AluY SINE Alu -8 303 1 2074 128 10 10 chr1 171917927 171918062 -110275602 - AluSx SINE Alu -177 135 1 2029 127 23 10 chr1 171918529 171918836 -110274828 - AluJb SINE Alu -1 311 1 613 184 57 7 chr1 171918839 171918980 -110274684 + L1ME2 LINE L1 6014 6161 -3 527 238 47 69 chr1 171918985 171919104 -110274560 - L1ME4a LINE L1 -69 6052 5932 1861 150 17 3 chr1 171919104 171919397 -110274267 - AluSx SINE Alu -15 297 1 527 238 47 69 chr1 171919397 171919554 -110274110 - L1ME4a LINE L1 -189 5932 5782 543 262 70 94 chr1 171919849 171920037 -110273627 + MIR SINE MIR 13 195 -67 2012 112 43 0 chr1 171920037 171920315 -110273349 - AluSq SINE Alu -23 290 1 543 262 70 94 chr1 171920315 171920382 -110273282 + MIR SINE MIR 195 262 0 755 189 0 16 chr1 171921232 171921359 -110272305 - AluSq/x SINE Alu -187 125 1 1544 183 16 16 chr1 171921359 171921665 -110271999 - AluJb SINE Alu -6 306 1 1548 108 132 0 chr1 171922226 171922484 -110271180 - AluSc SINE Alu -17 292 1 509 233 123 22 chr1 171922636 171922864 -110270800 + HAL1b LINE L1 745 995 -353 2313 66 55 0 chr1 171922873 171923162 -110270502 - AluSp SINE Alu -8 305 1 326 122 209 78 chr1 171923226 171923254 -110270410 + HAL1b LINE L1 1000 1023 -325 1791 166 23 10 chr1 171923254 171923555 -110270109 + AluJo SINE Alu 1 305 -7 326 122 209 78 chr1 171923555 171923641 -110270023 + HAL1b LINE L1 1023 1129 -219 2164 126 0 7 chr1 171923641 171923942 -110269722 + AluSx SINE Alu 1 299 -13 1273 119 0 0 chr1 171923945 171924121 -110269543 + AluSg/x SINE Alu 137 312 0 359 96 0 0 chr1 171924132 171924184 -110269480 + Alu SINE Alu 2 53 -250 2282 87 0 29 chr1 171924235 171924545 -110269119 + AluSx SINE Alu 1 301 -11 618 212 128 24 chr1 171924572 171924907 -110268757 + L1MC5 LINE L1 7543 7912 -49 1667 153 27 34 chr1 171924907 171925201 -110268463 + AluJb SINE Alu 1 292 -20 186 43 0 0 chr1 171925201 171925224 -110268440 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 368 226 151 45 chr1 171925230 171925371 -110268293 - HAL1b LINE L1 -389 959 790 1651 104 0 22 chr1 171925371 171925602 -110268062 - AluSg/x SINE Alu -3 309 84 368 226 151 45 chr1 171925602 171925659 -110268005 - HAL1b LINE L1 -558 790 740 362 221 188 19 chr1 171925736 171925890 -110267774 + L1ME4a LINE L1 5942 6121 0 1284 168 74 81 chr1 171925998 171926265 -110267399 + AluJo SINE Alu 1 267 -45 1656 178 3 56 chr1 171926265 171926585 -110267079 - AluJb SINE Alu -9 303 1 1284 168 74 81 chr1 171926585 171926615 -110267049 + AluJo SINE Alu 267 296 -16 2231 113 0 7 chr1 171926615 171926915 -110266749 + AluSx SINE Alu 1 298 -14 323 118 0 0 chr1 171926915 171926966 -110266698 - L1P LINE L1 -924 5222 5172 21 57 0 0 chr1 171927144 171927179 -110266485 + AT_rich Low_complexity Low_complexity 1 35 0 1858 151 16 7 chr1 171927226 171927531 -110266133 - AluSx SINE Alu -4 308 1 2225 96 3 16 chr1 171927583 171927896 -110265768 - AluSg SINE Alu -1 309 1 309 179 0 0 chr1 171927943 171928010 -110265654 + Alu SINE Alu 234 300 0 2286 95 0 0 chr1 171928447 171928732 -110264932 + AluSx SINE Alu 1 285 -27 2475 68 6 3 chr1 171929342 171929653 -110264011 - AluSq SINE Alu -1 312 1 319 236 57 37 chr1 171929829 171929919 -110263745 + L1PA8A LINE L1 5586 5673 -458 2171 110 0 7 chr1 171929919 171930220 -110263444 - AluSx SINE Alu -13 299 1 503 253 57 21 chr1 171930220 171930543 -110263121 + L1MC4a LINE L1 5704 6047 -74 2578 68 0 0 chr1 171930553 171930862 -110262802 - AluY SINE Alu -2 309 1 2136 125 0 16 chr1 171930887 171931199 -110262465 - AluSq SINE Alu -6 307 1 2427 82 0 0 chr1 171931204 171931498 -110262166 - AluSq SINE Alu -19 294 1 1986 161 0 0 chr1 171932495 171932805 -110260859 + AluJb SINE Alu 1 310 -2 218 315 118 16 chr1 171933138 171933265 -110260399 - L2 LINE L2 -218 3054 2915 2453 64 6 6 chr1 171933284 171933595 -110260069 + AluY SINE Alu 1 311 0 325 139 56 28 chr1 171933617 171933713 -110259951 - FLAM_A SINE Alu 0 141 44 603 314 133 28 chr1 171934146 171934540 -110259124 + L1MEd LINE L1 592 1044 -5075 2093 118 30 0 chr1 171934540 171934836 -110258828 + AluSx SINE Alu 1 305 -7 603 314 133 28 chr1 171934836 171934909 -110258755 + L1MEd LINE L1 1044 1108 -5011 447 300 76 22 chr1 171934910 171935445 -110258219 + L1MEd LINE L1 1162 1634 -856 29 60 0 0 chr1 171935532 171935582 -110258082 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr1 171935656 171935686 -110257978 + AT_rich Low_complexity Low_complexity 1 30 0 893 190 0 37 chr1 171935686 171935849 -110257815 + FRAM SINE Alu 1 157 -9 663 276 6 0 chr1 171935927 171936090 -110257574 + MIR SINE MIR 78 241 -21 621 241 87 14 chr1 171936205 171936389 -110257275 - MIR SINE MIR -6 256 61 2328 104 0 0 chr1 171936425 171936723 -110256941 + AluSg SINE Alu 1 298 -12 1939 142 3 20 chr1 171936875 171937171 -110256493 + AluJo SINE Alu 3 293 -19 2233 83 0 20 chr1 171937837 171938137 -110255527 + AluY SINE Alu 1 294 -17 243 114 0 0 chr1 171938784 171938828 -110254836 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 807 153 0 0 chr1 171938829 171938947 -110254717 - AluJb SINE Alu -194 118 1 975 175 22 2 chr1 171939664 171939881 -110253783 - L1MB4 LINE L1 -346 5834 5615 4294 158 17 52 chr1 171939898 171939949 -110253715 - L1MB4 LINE L1 0 6180 6129 2324 82 0 0 chr1 171939949 171940229 -110253435 - AluSg SINE Alu -30 280 1 4294 158 17 52 chr1 171940229 171941124 -110252540 - L1MB4 LINE L1 -51 6129 5284 1779 176 3 7 chr1 171941124 171941426 -110252238 - AluJb SINE Alu -11 301 1 4294 158 17 52 chr1 171941426 171941453 -110252211 - L1MB4 LINE L1 -896 5284 5258 3316 94 53 10 chr1 171941460 171941950 -110251714 - MER9 LTR ERVK 0 511 1 30949 82 4 1 chr1 171941951 171946526 -110247138 - HERVK9 LTR ERVK -1 8033 1424 633 39 0 0 chr1 171946524 171946602 -110247062 - HERVK9 LTR ERVK -5348 568 491 * 1891 141 3 19 chr1 171946642 171946955 -110246709 - AluSx SINE Alu -4 308 1 974 282 105 4 chr1 171948591 171949056 -110244608 + L1ME LINE L1 5298 5809 -353 581 151 7 110 chr1 171949533 171949679 -110243985 + L2 LINE L2 3171 3301 -12 207 267 33 17 chr1 171949883 171949943 -110243721 - MER5B DNA MER1_type -42 136 76 1634 207 19 11 chr1 171951399 171951766 -110241898 - MLT1A2 LTR MaLR 0 374 5 1484 201 4 4 chr1 171951904 171952167 -110241497 + AluJo SINE Alu 1 263 -49 540 0 0 0 chr1 171952180 171952240 -110241424 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 2220 51 0 14 chr1 171952536 171952811 -110240853 - AluY SINE Alu -40 271 1 597 107 0 91 chr1 171952814 171952935 -110240729 - MLT1B LTR MaLR -280 110 1 218 180 20 20 chr1 171952978 171953028 -110240636 + (TA)n Simple_repeat Simple_repeat 1 50 0 1953 139 29 23 chr1 171953267 171953577 -110240087 + AluJo SINE Alu 1 312 0 854 146 8 0 chr1 171953587 171953710 -110239954 + AluSq/x SINE Alu 1 124 -188 22 56 0 0 chr1 171954277 171954313 -110239351 + AT_rich Low_complexity Low_complexity 1 36 0 4599 46 2 0 chr1 171956864 171957389 -110236275 - LTR5 LTR ERVK -443 526 1 3800 70 213 0 chr1 171957389 171958033 -110235631 - L1P LINE L1 -4751 1395 615 541 235 148 0 chr1 171958343 171958502 -110235162 + MER5A DNA MER1_type 4 189 0 444 164 0 0 chr1 171958615 171958704 -110234960 - L1MA7 LINE L1 -136 6155 6078 669 105 0 35 chr1 171958708 171958822 -110234842 + L1MA7 LINE L1 6175 6284 -7 1506 251 45 16 chr1 171959392 171960092 -110233572 + L1M4c LINE L1 1176 2216 -4167 309 276 92 10 chr1 171960148 171960344 -110233320 + L1M4c LINE L1 2029 2240 -4144 2410 45 9 36 chr1 171960381 171960715 -110232949 - L1PA3 LINE L1 -314 5841 5517 9709 89 3 1 chr1 171961383 171962802 -110230862 - L1P LINE L1 -1441 4705 3283 277 284 28 55 chr1 171962909 171963018 -110230646 - MIR SINE MIR -150 112 7 1142 167 64 39 chr1 171963552 171963863 -110229801 + MER33 DNA MER1_type 1 319 -5 225 241 51 13 chr1 171963942 171964021 -110229643 - MER20B DNA MER1_type 0 783 702 1828 76 4 0 chr1 171964125 171964362 -110229302 + LTR5 LTR ERVK 729 966 -3 8428 40 1 0 chr1 171964365 171965462 -110228202 + L1P LINE L1 1390 2487 -3659 380 280 64 16 chr1 171966115 171966240 -110227424 + L2 LINE L2 3141 3271 -1 188 396 44 0 chr1 171967339 171967430 -110226234 - L2 LINE L2 -216 3056 2962 323 216 157 60 chr1 171967447 171967632 -110226032 - LTR16A LTR ERVL 0 450 248 1053 159 11 0 chr1 171967649 171967825 -110225839 - L1PA15 LINE L1 -8 6157 5980 408 323 40 16 chr1 171969171 171969295 -110224369 - L2 LINE L2 -9 3263 3137 529 286 108 83 chr1 171970236 171970639 -110223025 - L2 LINE L2 -1 3271 2854 2618 55 0 3 chr1 171970639 171970947 -110222717 + AluY SINE Alu 1 307 -4 529 286 108 83 chr1 171970947 171971076 -110222588 - L2 LINE L2 -418 2854 2730 318 267 34 103 chr1 171972041 171972057 -110221607 + L2 LINE L2 3122 3138 -134 2422 161 59 67 chr1 171972057 171972566 -110221098 + MLT1D LTR MaLR 1 505 0 318 267 34 103 chr1 171972566 171972695 -110220969 + L2 LINE L2 3138 3257 -15 309 354 27 20 chr1 171972956 171973103 -110220561 + MIR SINE MIR 3 150 -112 207 0 0 0 chr1 171974349 171974372 -110219292 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1878 111 4 4 chr1 171974374 171974627 -110219037 - AluSx SINE Alu -24 288 36 641 248 67 75 chr1 171975790 171976044 -110217620 - MIR SINE MIR 0 262 11 290 208 5 178 chr1 171976385 171976472 -110217192 + L1MEd LINE L1 1298 1332 -5084 1807 141 48 10 chr1 171976472 171976762 -110216902 + AluSx SINE Alu 1 301 -11 290 208 5 178 chr1 171976762 171976876 -110216788 + L1MEd LINE L1 1332 1464 -4952 * 382 243 88 39 chr1 171976865 171977046 -110216618 + L1MEd LINE L1 1680 1915 -4557 1102 164 32 196 chr1 171977430 171977864 -110215800 + MLT1A1 LTR MaLR 1 363 -2 443 306 0 0 chr1 171979014 171979125 -110214539 - MER94 DNA DNA 0 134 24 224 157 118 0 chr1 171979143 171979194 -110214470 + L2 LINE L2 2992 3048 -224 1059 237 58 14 chr1 171979285 171979576 -110214088 + MER58B DNA MER1_type 1 304 -37 25 0 0 0 chr1 171980345 171980370 -110213294 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 171981591 171981612 -110212052 + AT_rich Low_complexity Low_complexity 1 21 0 14777 46 4 1 chr1 171981843 171984211 -110209453 - L1PA7 LINE L1 -178 5976 3601 593 294 144 51 chr1 171984701 171985259 -110208405 - L2 LINE L2 -3 3310 2692 1861 269 91 32 chr1 171985264 171986404 -110207260 + L1MEc LINE L1 5 2070 -4326 1033 199 11 5 chr1 171986405 171986596 -110207068 + MLT1A1 LTR MaLR 1 192 -173 569 168 60 103 chr1 171986696 171986832 -110206832 - L1M4c LINE L1 -5312 1072 932 2320 104 0 0 chr1 171986832 171987131 -110206533 + AluSq SINE Alu 1 299 -14 569 168 60 103 chr1 171987131 171987143 -110206521 - L1M4c LINE L1 -5452 932 921 1821 166 20 0 chr1 171987143 171987438 -110206226 + AluJb SINE Alu 5 305 -7 569 168 60 103 chr1 171987438 171987473 -110206191 - L1M4c LINE L1 -5463 921 896 994 90 0 0 chr1 171987474 171987607 -110206057 + AluSg/x SINE Alu 175 307 -3 180 125 0 0 chr1 171987694 171987726 -110205938 + (T)n Simple_repeat Simple_repeat 1 32 0 809 178 15 7 chr1 171987752 171987887 -110205777 - FLAM_C SINE Alu -2 141 6 374 289 96 5 chr1 171987889 171988076 -110205588 - L1M4 LINE L1 -4460 2678 2475 384 265 100 65 chr1 171988245 171988445 -110205219 - L1M4 LINE L1 -4538 2421 2215 1295 116 0 0 chr1 171988485 171988657 -110205007 - AluSg/x SINE Alu -2 308 137 2277 221 78 51 chr1 171988662 171989229 -110204435 - L1M4 LINE L1 -4731 2228 1677 2240 111 24 0 chr1 171989229 171989526 -110204138 - AluSx SINE Alu -8 304 1 2277 221 78 51 chr1 171989526 171989560 -110204104 - L1M4 LINE L1 -5282 1677 1645 2175 117 13 0 chr1 171989560 171989859 -110203805 - AluSx SINE Alu -9 303 1 2277 221 78 51 chr1 171989859 171990128 -110203536 - L1M4 LINE L1 -5314 1645 1321 1816 167 59 16 chr1 171990128 171990451 -110203213 - MER1B DNA MER1_type 0 337 1 2277 221 78 51 chr1 171990451 171990585 -110203079 - L1M4 LINE L1 -5638 1321 1192 1017 164 55 0 chr1 171990877 171991060 -110202604 - AluSg/x SINE Alu 0 312 120 1747 256 62 67 chr1 171991225 171991850 -110201814 - L1M4 LINE L1 -5635 1224 349 220 333 47 27 chr1 171991892 171992042 -110201622 - L2 LINE L2 -1357 1957 1805 1804 151 20 0 chr1 171993383 171993675 -110199989 - AluJo SINE Alu -10 302 5 2423 75 3 0 chr1 171995354 171995648 -110198016 + AluSx SINE Alu 1 295 -17 250 349 56 0 chr1 171995705 171995831 -110197833 - L2 LINE L2 -4 3309 3177 199 257 81 27 chr1 171995949 171996023 -110197641 - MIR SINE MIR -12 250 173 2324 110 0 0 chr1 171996072 171996373 -110197291 + AluSx SINE Alu 1 301 -11 834 124 16 47 chr1 171996482 171996611 -110197053 + FLAM_C SINE Alu 1 125 -8 2201 82 50 4 chr1 171996760 171997040 -110196624 - AluSq SINE Alu -20 293 1 1015 138 0 0 chr1 171997102 171997254 -110196410 - FAM SINE Alu -20 165 14 894 157 81 43 chr1 171997286 171997341 -110196323 - L1MCa LINE L1 -4505 1921 1870 1908 137 31 0 chr1 171997341 171997634 -110196030 + AluSq SINE Alu 1 302 -11 894 157 81 43 chr1 171997634 171997788 -110195876 - L1MCa LINE L1 -4556 1870 1704 809 148 16 8 chr1 171997788 171997916 -110195748 + FLAM_C SINE Alu 2 130 -13 324 171 12 37 chr1 171997923 171998005 -110195659 - L1MCa LINE L1 -4800 1626 1547 887 133 0 22 chr1 171998336 171998471 -110195193 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr1 171999056 171999077 -110194587 + AT_rich Low_complexity Low_complexity 1 21 0 2981 78 92 5 chr1 171999106 171999518 -110194146 - LTR7 LTR ERV1 -2 448 1 777 133 0 0 chr1 171999769 171999882 -110193782 - AluSx SINE Alu -14 296 184 559 122 122 0 chr1 171999880 171999970 -110193694 - AluSx SINE Alu -211 102 2 * 1336 135 14 5 chr1 172000010 172000225 -110193439 - AluSg/x SINE Alu -11 299 83 744 73 21 0 chr1 172000225 172000321 -110193343 - AluSp SINE Alu -63 250 153 1225 149 156 70 chr1 172000321 172000724 -110192940 - LTR7 LTR ERV1 -11 439 2 1369 86 0 17 chr1 172000724 172000898 -110192766 - AluSp SINE Alu -142 171 1 1800 58 0 0 chr1 172000902 172001155 -110192509 - AluY SINE Alu 0 328 76 527 130 170 0 chr1 172001176 172001276 -110192388 - FLAM_C SINE Alu -16 117 1 838 146 0 31 chr1 172001304 172001434 -110192230 + FLAM_C SINE Alu 1 126 -17 833 215 58 16 chr1 172001438 172001629 -110192035 - L1ME3A LINE L1 -81 6089 5891 686 216 53 86 chr1 172001637 172001737 -110191927 - L1ME3A LINE L1 -400 5770 5668 2383 75 3 10 chr1 172001737 172002045 -110191619 - AluSp SINE Alu -5 308 3 1612 115 46 59 chr1 172002050 172002220 -110191444 - L1MA3 LINE L1 0 6305 6139 2148 128 0 0 chr1 172002220 172002510 -110191154 - AluSq SINE Alu -23 290 1 1612 115 46 59 chr1 172002510 172002643 -110191021 - L1MA3 LINE L1 -166 6139 6006 686 216 53 86 chr1 172002643 172002781 -110190883 - L1ME3A LINE L1 -506 5664 5534 340 97 0 48 chr1 172003419 172003481 -110190183 - L1MB8 LINE L1 -1 6177 6119 2035 86 0 0 chr1 172003487 172003743 -110189921 + AluSq SINE Alu 1 256 -57 324 202 0 0 chr1 172003743 172003809 -110189855 - AluJ/monomer SINE Alu -247 53 1 334 74 148 0 chr1 172003811 172003865 -110189799 - L1M4 LINE L1 -376 5808 5747 1522 282 125 18 chr1 172003900 172004540 -110189124 + L2 LINE L2 2339 3066 -247 985 66 49 0 chr1 172004549 172004671 -110188993 + AluSq/x SINE Alu 9 136 -176 1411 113 0 0 chr1 172004822 172005008 -110188656 + AluSx SINE Alu 1 186 -126 6691 108 17 9 chr1 172005008 172005970 -110187694 - LTR5 LTR ERVK 0 969 1 2170 77 4 0 chr1 172005970 172006244 -110187420 - HERVK LTR ERVK 0 7243 6969 * 14901 41 4 0 chr1 172006231 172007979 -110185685 + HERVK LTR ERVK 3779 5533 -1710 608 89 0 0 chr1 172008007 172008086 -110185578 - LTR5 LTR ERVK -890 79 1 818 97 0 18 chr1 172008086 172008199 -110185465 + AluSp/q SINE Alu 181 291 -22 320 114 0 0 chr1 172008335 172008379 -110185285 - Alu SINE Alu -258 44 1 281 313 193 18 chr1 172008568 172008704 -110184960 + L2 LINE L2 1966 2077 -1237 986 181 18 18 chr1 172008704 172008870 -110184794 - FRAM SINE Alu 0 166 1 281 313 193 18 chr1 172008870 172009008 -110184656 + L2 LINE L2 2077 2288 -1026 198 310 52 0 chr1 172009008 172009066 -110184598 - L3 LINE CR1 -2 1575 1515 2211 94 37 0 chr1 172009122 172009419 -110184245 + AluSx SINE Alu 1 308 -4 2111 96 7 20 chr1 172009786 172010088 -110183576 - AluSc SINE Alu -11 298 1 1056 83 0 0 chr1 172010091 172010223 -110183441 - AluSq/x SINE Alu -180 132 1 270 277 69 30 chr1 172010224 172010325 -110183339 + L2 LINE L2 3152 3256 -16 2393 81 0 0 chr1 172010572 172010870 -110182794 - AluSx SINE Alu -14 298 1 830 149 22 0 chr1 172012745 172012879 -110180785 - AluJb SINE Alu -175 137 1 21 0 0 31 chr1 172014031 172014050 -110179614 + AT_rich Low_complexity Low_complexity 1 20 -11 2252 54 43 0 chr1 172014050 172014328 -110179336 + AluY SINE Alu 1 290 -21 21 0 0 31 chr1 172014328 172014340 -110179324 + AT_rich Low_complexity Low_complexity 20 31 0 475 275 65 31 chr1 172015924 172016097 -110177567 + MIR3 SINE MIR 6 187 -21 31 0 0 0 chr1 172017240 172017271 -110176393 + AT_rich Low_complexity Low_complexity 1 31 0 2358 107 0 7 chr1 172019321 172019630 -110174034 + AluSx SINE Alu 4 310 -2 1828 169 36 3 chr1 172019790 172020092 -110173572 - AluJb SINE Alu 0 312 1 722 197 16 0 chr1 172020112 172020234 -110173430 - FLAM_C SINE Alu -18 125 2 226 265 55 40 chr1 172020237 172020348 -110173316 - MIR SINE MIR -51 157 42 1963 134 34 0 chr1 172021608 172021900 -110171764 - AluSx SINE Alu -10 302 1 2304 111 0 0 chr1 172021906 172022204 -110171460 - AluSq SINE Alu -15 298 1 2145 127 0 0 chr1 172022210 172022530 -110171134 - AluSx SINE Alu 0 320 1 509 165 39 10 chr1 172022530 172022633 -110171031 - AluYb8 SINE Alu -6 312 207 2068 38 8 0 chr1 172022636 172022871 -110170793 + AluY SINE Alu 63 299 -12 1654 108 0 5 chr1 172022870 172023092 -110170572 + AluSq SINE Alu 76 296 -17 * 425 270 40 8 chr1 172023114 172023240 -110170424 + MIR SINE MIR 84 213 -49 341 307 56 65 chr1 172023245 172023276 -110170388 - L2 LINE L2 -63 3250 3220 2243 117 3 0 chr1 172023276 172023574 -110170090 + AluSq SINE Alu 1 299 -14 341 307 56 65 chr1 172023574 172023848 -110169816 - L2 LINE L2 -93 3220 2948 1155 119 6 0 chr1 172023933 172024092 -110169572 + AluSg/x SINE Alu 134 293 -17 2253 103 3 22 chr1 172024289 172024608 -110169056 + AluSq SINE Alu 1 313 0 192 253 187 13 chr1 172024608 172024683 -110168981 - L2 LINE L2 -1373 1941 1854 277 262 0 0 chr1 172024885 172024946 -110168718 - L2 LINE L2 -9 3263 3203 1452 171 38 45 chr1 172025185 172025477 -110168187 + AluJo SINE Alu 1 290 -22 2385 89 3 19 chr1 172025770 172026085 -110167579 + AluSg SINE Alu 1 310 0 1683 149 32 11 chr1 172026249 172026530 -110167134 + AluJo SINE Alu 9 295 -17 1544 173 24 10 chr1 172026619 172026908 -110166756 + AluJo SINE Alu 5 297 -15 1616 161 19 19 chr1 172027248 172027559 -110166105 + AluSq SINE Alu 3 313 0 1683 149 32 11 chr1 172027723 172028004 -110165660 + AluJo SINE Alu 9 295 -17 1649 170 21 7 chr1 172028093 172028382 -110165282 + AluJo SINE Alu 5 297 -15 371 302 52 9 chr1 172028767 172028883 -110164781 - MIR3 SINE MIR -7 201 81 2041 106 67 3 chr1 172029088 172029371 -110164293 - AluSq SINE Alu -12 301 1 926 169 133 31 chr1 172029457 172029652 -110164012 - MER20 DNA MER1_type -3 216 2 2301 61 4 4 chr1 172029675 172029952 -110163712 + AluY SINE Alu 24 300 -11 1690 193 7 0 chr1 172030244 172030540 -110163124 + AluJo SINE Alu 1 298 -14 264 232 36 0 chr1 172031018 172031074 -110162590 + MIR SINE MIR 100 157 -105 2311 121 0 6 chr1 172031088 172031401 -110162263 + AluSx SINE Alu 1 311 -1 1723 151 38 14 chr1 172031428 172031720 -110161944 + AluJb SINE Alu 1 299 -13 2316 92 0 3 chr1 172031765 172032057 -110161607 + AluSx SINE Alu 1 291 -21 779 176 8 0 chr1 172032113 172032244 -110161420 + FLAM_A SINE Alu 1 132 -1 2313 102 3 0 chr1 172033010 172033304 -110160360 + AluSc SINE Alu 3 297 -12 28 48 0 0 chr1 172033398 172033440 -110160224 + AT_rich Low_complexity Low_complexity 1 42 0 2400 61 0 10 chr1 172033440 172033735 -110159929 + AluY SINE Alu 1 292 -19 787 118 0 148 chr1 172033744 172033819 -110159845 + U4 snRNA snRNA 1 85 -60 2144 84 21 7 chr1 172033819 172034103 -110159561 + AluY SINE Alu 1 288 -23 2199 103 6 45 chr1 172034109 172034420 -110159244 + AluSx SINE Alu 1 299 -13 787 118 0 148 chr1 172034420 172034431 -110159233 + U4 snRNA snRNA 90 101 -44 1472 166 136 4 chr1 172034431 172034696 -110158968 + AluJb SINE Alu 1 300 -2 787 118 0 148 chr1 172034696 172034770 -110158894 + U4 snRNA snRNA 101 144 -1 22 0 0 0 chr1 172034772 172034794 -110158870 + AT_rich Low_complexity Low_complexity 1 22 0 2141 127 10 3 chr1 172034796 172035095 -110158569 + AluSq SINE Alu 1 301 -12 1940 153 10 7 chr1 172035126 172035426 -110158238 - AluSx SINE Alu -11 301 1 1914 142 19 35 chr1 172035976 172036110 -110157554 + AluJo SINE Alu 1 136 -176 2411 82 0 22 chr1 172036110 172036426 -110157238 + AluSc SINE Alu 1 309 0 2180 105 3 20 chr1 172036426 172036729 -110156935 + AluSx SINE Alu 1 299 -13 1914 142 19 35 chr1 172036729 172036910 -110156754 + AluJo SINE Alu 134 312 0 2190 97 0 27 chr1 172037002 172037301 -110156363 + AluSq SINE Alu 1 291 -22 324 240 25 91 chr1 172038374 172038408 -110155256 - L3 LINE CR1 -21 1556 1521 817 154 15 0 chr1 172038408 172038538 -110155126 + FLAM_C SINE Alu 1 132 -1 324 240 25 91 chr1 172038538 172038624 -110155040 - L3 LINE CR1 -56 1521 1444 455 331 169 10 chr1 172038629 172038943 -110154721 - L3 LINE CR1 -283 1294 931 643 200 9 17 chr1 172038952 172039067 -110154597 + FLAM_A SINE Alu 1 114 -19 2065 143 13 3 chr1 172039205 172039513 -110154151 + AluSx SINE Alu 1 311 -1 688 0 0 0 chr1 172039520 172039603 -110154061 + L1HS LINE L1 6072 6154 -1 195 42 0 0 chr1 172039605 172039629 -110154035 + (A)n Simple_repeat Simple_repeat 1 24 0 1512 155 16 65 chr1 172039629 172039952 -110153712 + AluSx SINE Alu 1 307 -5 604 247 62 62 chr1 172040001 172040083 -110153581 - L1ME4a LINE L1 -105 6016 5935 1931 156 10 7 chr1 172040083 172040378 -110153286 - AluJb SINE Alu -16 296 1 604 247 62 62 chr1 172040378 172040409 -110153255 - L1ME4a LINE L1 -186 5935 5905 1433 206 27 7 chr1 172040409 172040705 -110152959 + AluJb SINE Alu 3 304 -8 604 247 62 62 chr1 172040705 172040962 -110152702 - L1ME4a LINE L1 -215 5906 5645 486 96 29 0 chr1 172040962 172041066 -110152598 + (TA)n Simple_repeat Simple_repeat 2 108 0 2233 110 3 7 chr1 172041069 172041369 -110152295 - AluSq SINE Alu -14 299 1 1939 101 6 104 chr1 172041421 172041748 -110151916 - AluSg SINE Alu -14 296 2 1296 180 67 35 chr1 172041886 172042169 -110151495 + AluJo SINE Alu 1 292 -20 2193 111 0 0 chr1 172042742 172043058 -110150606 + AluSc SINE Alu 1 316 0 2468 39 3 7 chr1 172043209 172043535 -110150129 - AluY SINE Alu 0 325 1 2111 134 0 10 chr1 172043537 172043836 -110149828 - AluSx SINE Alu -16 296 1 222 300 0 14 chr1 172043881 172043951 -110149713 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 820 196 0 14 chr1 172044014 172044157 -110149507 - FRAM SINE Alu -20 156 16 806 129 0 0 chr1 172044178 172044294 -110149370 + AluSg/x SINE Alu 188 303 -9 435 208 0 0 chr1 172044294 172044366 -110149298 - AluJ/FLAM SINE Alu -236 76 5 2419 73 3 0 chr1 172044372 172044686 -110148978 - AluSp SINE Alu 0 313 1 517 261 97 100 chr1 172044689 172044747 -110148917 - L3 LINE CR1 -726 851 794 839 195 53 18 chr1 172044747 172044916 -110148748 + FAM SINE Alu 1 175 0 517 261 97 100 chr1 172044916 172045167 -110148497 - L3 LINE CR1 -783 794 543 2328 99 3 0 chr1 172045296 172045590 -110148074 - AluSp SINE Alu -18 295 1 212 405 26 11 chr1 172045767 172045957 -110147707 + L2 LINE L2 955 1147 -2167 * 341 257 0 14 chr1 172045954 172046028 -110147636 - L2 LINE L2 0 3313 3241 1115 147 156 30 chr1 172046317 172046548 -110147116 - AluSg1 SINE Alu -49 260 1 432 15 59 15 chr1 172046551 172046619 -110147045 + (CCCCCT)n Simple_repeat Simple_repeat 3 73 0 1869 114 34 0 chr1 172046623 172046885 -110146779 - AluSx SINE Alu -9 303 33 184 182 18 18 chr1 172046885 172046940 -110146724 + CT-rich Low_complexity Low_complexity 3 57 0 1646 189 23 10 chr1 172046941 172047247 -110146417 - AluJb SINE Alu -2 310 1 2433 82 0 0 chr1 172047545 172047838 -110145826 - AluSc SINE Alu -16 293 1 2575 74 3 0 chr1 172047844 172048156 -110145508 - AluSp SINE Alu 0 313 1 2472 74 0 7 chr1 172048162 172048471 -110145193 - AluY SINE Alu -4 307 1 1860 139 11 68 chr1 172048683 172049036 -110144628 + MER1B DNA MER1_type 1 333 -6 2200 119 3 0 chr1 172049036 172049339 -110144325 + AluSx SINE Alu 1 304 -8 590 230 29 166 chr1 172049475 172049504 -110144160 + L1MEd LINE L1 350 381 -5738 2561 74 0 0 chr1 172049504 172049814 -110143850 + AluY SINE Alu 1 310 -1 590 230 29 166 chr1 172049814 172050008 -110143656 + L1MEd LINE L1 381 600 -5519 336 102 0 0 chr1 172050008 172050057 -110143607 + (CTTA)n Simple_repeat Simple_repeat 3 51 0 2080 114 4 0 chr1 172050057 172050338 -110143326 - AluSx SINE Alu -30 282 1 590 230 29 166 chr1 172050338 172050672 -110142992 + L1MEd LINE L1 598 832 -5287 2213 116 0 3 chr1 172050672 172050973 -110142691 + AluSx SINE Alu 2 301 -11 225 0 0 0 chr1 172051085 172051110 -110142554 + (A)n Simple_repeat Simple_repeat 1 25 0 2179 113 7 0 chr1 172051112 172051403 -110142261 + AluSg SINE Alu 1 293 -17 344 216 10 82 chr1 172051424 172051521 -110142143 + L1MC4 LINE L1 6615 6704 -1338 624 107 0 91 chr1 172051562 172051683 -110141981 + MLT1B LTR MaLR 1 110 -280 2477 92 0 0 chr1 172051686 172051991 -110141673 + AluSq SINE Alu 1 305 -8 881 127 82 13 chr1 172051998 172052156 -110141508 + MLT1B LTR MaLR 221 389 -1 182 232 39 144 chr1 172052171 172052352 -110141312 + L2 LINE L2 2086 2247 -1067 * 189 300 123 41 chr1 172052265 172052435 -110141229 + MIR SINE MIR 15 198 -64 1571 175 0 56 chr1 172052439 172052742 -110140922 + AluJo SINE Alu 5 290 -22 2241 116 0 3 chr1 172052753 172053054 -110140610 + AluSg SINE Alu 1 300 -10 644 266 81 5 chr1 172053059 172053281 -110140383 - MIR SINE MIR -14 248 10 2251 114 13 0 chr1 172053474 172053780 -110139884 - AluSp SINE Alu -3 310 1 2292 104 0 22 chr1 172053802 172054119 -110139545 - AluSg SINE Alu 0 310 1 2907 13 0 0 chr1 172054128 172054439 -110139225 - AluYb8 SINE Alu -7 311 1 223 233 0 0 chr1 172054503 172054546 -110139118 + L2 LINE L2 3219 3261 -11 406 299 62 96 chr1 172054554 172054755 -110138909 + L2 LINE L2 2206 2412 -902 1165 181 111 62 chr1 172054755 172054868 -110138796 + AluJo SINE Alu 1 107 -195 2075 113 34 0 chr1 172054868 172055161 -110138503 + AluSx SINE Alu 1 303 -9 1165 181 111 62 chr1 172055161 172055335 -110138329 + AluJo SINE Alu 107 302 0 406 299 62 96 chr1 172055335 172055387 -110138277 + L2 LINE L2 2412 2464 -850 2416 91 0 3 chr1 172055387 172055683 -110137981 - AluSp SINE Alu -18 295 1 406 299 62 96 chr1 172055683 172055809 -110137855 + L2 LINE L2 2464 2593 -721 2250 91 44 0 chr1 172055809 172056105 -110137559 - AluSg SINE Alu -1 309 1 406 299 62 96 chr1 172056105 172056288 -110137376 + L2 LINE L2 2593 2751 -563 955 206 132 8 chr1 172056377 172056634 -110137030 + AluJb SINE Alu 1 289 -13 2298 112 3 3 chr1 172056646 172056958 -110136706 - AluSq SINE Alu -1 312 1 1127 90 0 0 chr1 172057090 172057224 -110136440 + AluSg1 SINE Alu 1 134 -175 2265 104 3 0 chr1 172057224 172057521 -110136143 + AluSg SINE Alu 1 298 -12 599 217 0 0 chr1 172057765 172057871 -110135793 + FLAM_A SINE Alu 2 107 -35 2408 80 6 19 chr1 172057871 172058185 -110135479 - AluY SINE Alu -1 310 1 1863 176 3 3 chr1 172058208 172058520 -110135144 + AluJb SINE Alu 1 312 0 2339 95 3 3 chr1 172059011 172059315 -110134349 - AluSp SINE Alu -9 304 1 2026 152 0 0 chr1 172059318 172059620 -110134044 - AluSx SINE Alu -10 302 1 1729 178 0 0 chr1 172059620 172059896 -110133768 + AluJb SINE Alu 24 299 -13 974 106 0 56 chr1 172060099 172060212 -110133452 + AluSq/x SINE Alu 1 106 -207 1523 147 112 68 chr1 172060212 172060641 -110133023 + LTR7 LTR ERV1 1 448 -2 974 106 0 56 chr1 172060641 172060669 -110132995 + AluSq/x SINE Alu 106 134 -179 2028 122 10 3 chr1 172060670 172060965 -110132699 + AluSx SINE Alu 1 297 -15 285 219 16 0 chr1 172061500 172061564 -110132100 + (CCCCAG)n Simple_repeat Simple_repeat 5 69 0 2380 101 3 0 chr1 172067048 172067355 -110126309 - AluSp SINE Alu -5 308 1 199 0 0 0 chr1 172067391 172067413 -110126251 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 424 145 0 0 chr1 172067413 172067475 -110126189 - AluSg/x SINE Alu -1 299 217 1319 104 28 0 chr1 172067475 172067657 -110126007 - AluSq SINE Alu -126 187 1 24 32 0 0 chr1 172068391 172068422 -110125242 + AT_rich Low_complexity Low_complexity 1 31 0 1108 113 0 12 chr1 172068718 172068886 -110124778 + AluSg/x SINE Alu 137 302 -10 1874 124 0 40 chr1 172068886 172069185 -110124479 + AluSg SINE Alu 6 292 -18 1726 103 107 0 chr1 172069199 172069460 -110124204 + AluSx SINE Alu 11 299 -13 1240 112 0 0 chr1 172069460 172069629 -110124035 + AluSx SINE Alu 1 169 -143 565 70 0 0 chr1 172069630 172069701 -110123963 + AluSc SINE Alu 218 288 -21 997 208 9 9 chr1 172069886 172070102 -110123562 - AluJo SINE Alu -15 297 82 2213 105 0 10 chr1 172070249 172070562 -110123102 + AluSg SINE Alu 1 310 0 1757 185 0 3 chr1 172070792 172071089 -110122575 + AluJb SINE Alu 1 296 -16 1731 141 62 0 chr1 172071271 172071547 -110122117 + AluSx SINE Alu 1 293 -19 2118 105 0 10 chr1 172071749 172072054 -110121610 + AluSx SINE Alu 1 302 -10 1809 191 0 0 chr1 172072058 172072367 -110121297 + 7SLRNA srpRNA srpRNA 1 309 -11 1772 118 70 0 chr1 172074087 172074359 -110119305 + AluSx SINE Alu 1 291 -21 1920 171 0 0 chr1 172074467 172074777 -110118887 + 7SLRNA srpRNA srpRNA 1 310 -10 1960 116 22 0 chr1 172074978 172075283 -110118381 + AluSx SINE Alu 1 311 0 997 141 6 0 chr1 172075372 172075528 -110118136 + AluJb SINE Alu 156 312 0 696 167 0 0 chr1 172075541 172075643 -110118021 + FLAM_A SINE Alu 21 122 -20 758 161 0 51 chr1 172075662 172075799 -110117865 - AluSq/x SINE Alu -178 135 6 2009 120 27 0 chr1 172075830 172076129 -110117535 + AluSq SINE Alu 1 307 -6 806 186 177 0 chr1 172076476 172076578 -110117086 + MER58B DNA MER1_type 4 87 -2333 1861 136 10 36 chr1 172076578 172076887 -110116777 + AluJo SINE Alu 1 301 -11 806 186 177 0 chr1 172076887 172077062 -110116602 + MER58B DNA MER1_type 87 340 -1 192 183 99 70 chr1 172082531 172082602 -110111062 + L2 LINE L2 3190 3262 -10 510 291 0 0 chr1 172085481 172085737 -110107927 + (TG)n Simple_repeat Simple_repeat 1 256 0 2248 101 0 0 chr1 172086039 172086336 -110107328 + AluSg SINE Alu 1 297 -13 1693 152 31 7 chr1 172089420 172089710 -110103954 - AluJo SINE Alu -15 297 1 21 0 0 0 chr1 172091748 172091769 -110101895 + GC_rich Low_complexity Low_complexity 1 21 0 181 121 0 52 chr1 172091952 172092010 -110101654 + (CCCCCG)n Simple_repeat Simple_repeat 3 57 0 217 156 22 22 chr1 172092307 172092352 -110101312 + (CGCGG)n Simple_repeat Simple_repeat 5 49 0 467 301 27 16 chr1 172092601 172092784 -110100880 + MIR SINE MIR 21 205 -57 2430 66 0 0 chr1 172092897 172093200 -110100464 - AluY SINE Alu -8 303 1 2285 90 3 3 chr1 172093254 172093566 -110100098 - AluSp SINE Alu -1 312 1 23 0 0 0 chr1 172093566 172093589 -110100075 + AT_rich Low_complexity Low_complexity 1 23 0 1067 150 0 0 chr1 172093593 172093766 -110099898 + FRAM SINE Alu 1 173 -3 2236 98 0 3 chr1 172093812 172094119 -110099545 - AluSg SINE Alu -4 306 1 552 198 0 0 chr1 172094213 172094304 -110099360 - AluJ/FLAM SINE Alu -220 92 2 2247 107 0 3 chr1 172094666 172094975 -110098689 + AluSx SINE Alu 1 308 -4 805 189 0 0 chr1 172094994 172095126 -110098538 + FLAM_A SINE Alu 1 132 -1 865 139 0 0 chr1 172095940 172096069 -110097595 + FLAM_C SINE Alu 1 129 -14 2152 100 37 0 chr1 172096101 172096401 -110097263 + AluSp SINE Alu 1 311 -2 2185 73 4 0 chr1 172096441 172096715 -110096949 + AluSx SINE Alu 21 295 -17 634 273 23 36 chr1 172096822 172097042 -110096622 - MIR SINE MIR 0 262 46 187 269 134 0 chr1 172097577 172097644 -110096020 + L2 LINE L2 3191 3266 -6 2248 101 3 0 chr1 172097862 172098169 -110095495 + AluSg SINE Alu 1 308 -2 892 120 0 0 chr1 172098285 172098410 -110095254 - AluSq/x SINE Alu -186 126 2 300 88 50 12 chr1 172098410 172098490 -110095174 + Charlie5 DNA MER1_type 2513 2595 -17 2206 87 10 3 chr1 172098490 172098789 -110094875 + AluSx SINE Alu 1 301 -11 834 243 45 21 chr1 172098839 172099255 -110094409 + MLT1D LTR MaLR 1 469 -36 747 246 0 29 chr1 172099264 172099435 -110094229 - FRAM SINE Alu 0 166 1 21 0 0 0 chr1 172099443 172099464 -110094200 + AT_rich Low_complexity Low_complexity 1 21 0 945 173 45 14 chr1 172099634 172099854 -110093810 + L1M4 LINE L1 5256 5482 -702 1495 154 79 8 chr1 172099867 172100133 -110093531 + AluJo SINE Alu 18 302 -10 2084 99 27 0 chr1 172100133 172100425 -110093239 + AluSg SINE Alu 1 300 -10 804 154 67 7 chr1 172100427 172100599 -110093065 + AluJb SINE Alu 128 308 0 297 291 0 0 chr1 172100724 172100803 -110092861 - AluJo SINE Alu 0 302 224 1228 164 51 5 chr1 172100846 172101060 -110092604 - AluJo SINE Alu -88 224 1 631 156 8 0 chr1 172101061 172101183 -110092481 - L1MB7 LINE L1 -248 5936 5814 2193 80 42 0 chr1 172101199 172101488 -110092176 + AluY SINE Alu 1 301 -10 812 157 0 15 chr1 172101488 172101616 -110092048 - AluJo/FLAM SINE Alu -175 127 2 622 90 0 0 chr1 172101659 172101737 -110091927 - AluSc SINE Alu -114 195 118 2343 81 0 3 chr1 172101743 172102051 -110091613 - AluY SINE Alu -4 307 1 2052 106 0 17 chr1 172102057 172102358 -110091306 - AluSx SINE Alu -16 296 1 2059 116 0 0 chr1 172102362 172102676 -110090988 - AluSx SINE Alu 0 314 1 1448 111 0 49 chr1 172102747 172102973 -110090691 + AluSg/x SINE Alu 72 286 -24 204 40 0 0 chr1 172102976 172103001 -110090663 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 578 338 50 20 chr1 172103092 172103394 -110090270 + MLT1L LTR MaLR 84 394 -221 297 286 89 9 chr1 172103452 172103564 -110090100 + MLT1L LTR MaLR 493 613 -2 327 309 145 34 chr1 172103569 172103701 -110089963 + L2 LINE L2 3005 3121 -192 2297 70 0 20 chr1 172103701 172104003 -110089661 - AluY SINE Alu -14 297 2 327 309 145 34 chr1 172104003 172104132 -110089532 + L2 LINE L2 3121 3295 -18 207 0 0 0 chr1 172104134 172104157 -110089507 + (A)n Simple_repeat Simple_repeat 1 23 0 237 400 51 20 chr1 172104280 172104475 -110089189 - L2 LINE L2 -1985 1329 1129 2449 51 0 0 chr1 172104718 172105014 -110088650 - AluY SINE Alu -15 296 1 520 224 86 26 chr1 172105251 172105403 -110088261 + MIR SINE MIR 81 241 -21 432 232 80 0 chr1 172105516 172105628 -110088036 + MIR SINE MIR 65 185 -77 2470 171 79 52 chr1 172106272 172106330 -110087334 + MER89 LTR ERV1 1 56 -503 2061 72 72 0 chr1 172106330 172106607 -110087057 + AluSp SINE Alu 1 297 -16 2470 171 79 52 chr1 172106607 172107050 -110086614 + MER89 LTR ERV1 56 521 -38 2187 51 0 11 chr1 172107050 172107324 -110086340 - AluY SINE Alu -40 271 1 2470 171 79 52 chr1 172107324 172107365 -110086299 + MER89 LTR ERV1 521 559 0 674 292 107 33 chr1 172107758 172108294 -110085370 - L2 LINE L2 -1 3312 2738 2271 101 0 3 chr1 172108548 172108854 -110084810 - AluSx SINE Alu -7 305 1 2286 87 0 0 chr1 172109679 172109977 -110083687 + AluSc SINE Alu 1 298 -11 2185 102 0 0 chr1 172110364 172110659 -110083005 - AluSx SINE Alu -15 297 3 300 277 11 32 chr1 172110696 172110790 -110082874 - MIR SINE MIR -3 259 168 242 242 168 0 chr1 172111264 172111359 -110082305 - L2 LINE L2 -228 3044 2934 386 289 116 8 chr1 172111504 172111625 -110082039 + MIR3 SINE MIR 43 176 -32 1336 193 19 8 chr1 172111627 172111891 -110081773 + AluJb SINE Alu 1 267 -45 882 190 25 0 chr1 172112505 172112663 -110081001 + FRAM SINE Alu 1 162 -4 902 88 0 36 chr1 172113021 172113158 -110080506 + AluSg/x SINE Alu 175 306 -6 1861 155 13 7 chr1 172114239 172114549 -110079115 + AluJo SINE Alu 1 312 0 1932 142 30 0 chr1 172114559 172114861 -110078803 + AluSx SINE Alu 1 311 -1 441 211 14 14 chr1 172114861 172114999 -110078665 + GA-rich Low_complexity Low_complexity 9 450 0 2277 98 16 3 chr1 172115003 172115311 -110078353 + AluSx SINE Alu 1 310 -2 474 199 11 35 chr1 172115324 172115426 -110078238 + GA-rich Low_complexity Low_complexity 1 104 -2135 2266 121 0 7 chr1 172115426 172115731 -110077933 + AluSq SINE Alu 1 303 -10 2481 85 0 10 chr1 172115731 172116036 -110077628 + AluSc SINE Alu 1 302 -7 2209 126 10 0 chr1 172116035 172116344 -110077320 + AluSp SINE Alu 1 312 -1 474 199 11 35 chr1 172116036 172116345 -110077319 + GA-rich Low_complexity Low_complexity 103 418 -1821 2224 86 41 7 chr1 172116345 172116635 -110077029 + AluSq SINE Alu 1 300 -13 2486 76 0 10 chr1 172116635 172116936 -110076728 + AluSc SINE Alu 1 298 -11 2216 126 10 0 chr1 172116935 172117245 -110076419 + AluSp SINE Alu 1 313 0 474 199 11 35 chr1 172116936 172117247 -110076417 + GA-rich Low_complexity Low_complexity 417 734 -1505 2277 81 44 3 chr1 172117247 172117544 -110076120 + AluSq SINE Alu 1 309 -4 474 199 11 35 chr1 172117544 172117620 -110076044 + GA-rich Low_complexity Low_complexity 734 2239 0 2211 75 71 0 chr1 172117969 172118251 -110075413 + AluSx SINE Alu 1 302 -10 700 160 29 0 chr1 172118403 172118531 -110075133 - MER33 DNA MER1_type -182 181 3 2198 119 7 0 chr1 172118538 172118840 -110074824 - AluSx SINE Alu -8 304 1 2286 110 7 7 chr1 172118907 172119216 -110074448 - AluSx SINE Alu -1 311 3 793 267 93 12 chr1 172119292 172119636 -110074028 + L1ME3A LINE L1 4674 5045 -1101 * 1503 238 128 48 chr1 172119610 172120080 -110073584 + L1ME3A LINE L1 5293 5825 -345 2199 91 28 50 chr1 172120080 172120400 -110073264 + AluSp SINE Alu 1 313 0 1503 238 128 48 chr1 172120400 172120539 -110073125 + L1ME3A LINE L1 5825 5951 -219 2464 123 24 46 chr1 172120547 172121003 -110072661 + L1MB4 LINE L1 5707 6152 -28 2243 101 14 3 chr1 172121009 172121305 -110072359 - AluSp SINE Alu -9 304 6 2123 71 54 37 chr1 172121311 172121606 -110072058 - AluSq SINE Alu -13 300 1 1068 70 8 0 chr1 172121606 172121734 -110071930 - AluSp SINE Alu -176 137 9 468 107 24 0 chr1 172121776 172121860 -110071804 + L1MB8 LINE L1 6093 6178 0 1017 130 0 13 chr1 172122098 172122252 -110071412 - AluSp/q SINE Alu -4 309 158 2229 71 4 11 chr1 172122359 172122639 -110071025 - AluSp SINE Alu -35 278 1 230 383 37 0 chr1 172123466 172123573 -110070091 - L2 LINE L2 -19 3294 3184 186 43 0 0 chr1 172123612 172123635 -110070029 + (CAAG)n Simple_repeat Simple_repeat 2 24 0 1336 107 6 0 chr1 172123756 172123933 -110069731 - AluSg/x SINE Alu -1 309 132 2382 67 14 0 chr1 172123933 172124217 -110069447 - AluSg SINE Alu -22 288 1 2369 88 0 3 chr1 172124219 172124516 -110069148 - AluSq SINE Alu -17 296 1 1826 138 72 3 chr1 172125180 172125470 -110068194 + AluJo SINE Alu 1 310 -2 2632 52 3 0 chr1 172125481 172125788 -110067876 + AluY SINE Alu 1 308 -3 2099 130 14 0 chr1 172125788 172125919 -110067745 + AluSx SINE Alu 1 129 -183 2507 77 3 0 chr1 172125919 172126230 -110067434 + AluSx SINE Alu 1 312 0 2099 130 14 0 chr1 172126230 172126391 -110067273 + AluSx SINE Alu 129 297 -15 2312 122 3 3 chr1 172126448 172126760 -110066904 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 172126857 172126878 -110066786 + AT_rich Low_complexity Low_complexity 1 21 0 1779 174 17 3 chr1 172126946 172127240 -110066424 + AluJo SINE Alu 1 298 -14 2245 95 14 0 chr1 172127241 172127554 -110066110 + AluSq SINE Alu 1 317 0 2042 112 0 31 chr1 172127556 172127894 -110065770 + AluSq SINE Alu 1 329 0 795 150 0 15 chr1 172127906 172128039 -110065625 + FLAM_C SINE Alu 3 133 0 1081 117 85 0 chr1 172128410 172128598 -110065066 - MER46A DNA MER2_type 0 236 33 1985 121 6 84 chr1 172129010 172129197 -110064467 - AluSx SINE Alu -14 298 145 2401 75 0 0 chr1 172129197 172129477 -110064187 - AluSg SINE Alu -30 280 1 1985 121 6 84 chr1 172129477 172129612 -110064052 - AluSx SINE Alu -167 145 1 1276 168 148 17 chr1 172129745 172130043 -110063621 - MER2 DNA MER2_type 0 345 9 228 253 32 63 chr1 172129959 172130054 -110063610 + Tigger7 DNA MER2_type 2496 2587 0 * 213 94 0 0 chr1 172134802 172134834 -110058830 + (T)n Simple_repeat Simple_repeat 1 32 0 2211 113 0 10 chr1 172135869 172136169 -110057495 + AluSp SINE Alu 2 298 -15 186 340 31 31 chr1 172136241 172136338 -110057326 - L2 LINE L2 -853 2461 2365 310 204 11 86 chr1 172136352 172136445 -110057219 - L1MC5 LINE L1 -31 7930 7845 204 235 59 0 chr1 172136485 172136536 -110057128 - L2 LINE L2 -952 2362 2309 221 89 22 44 chr1 172136701 172136746 -110056918 + L2 LINE L2 2345 2388 -926 1708 168 46 6 chr1 172136765 172137116 -110056548 - MLT1A1 LTR MaLR 0 365 1 2338 97 7 0 chr1 172137239 172137539 -110056125 - AluSx SINE Alu -10 302 1 2180 55 24 34 chr1 172138298 172138591 -110055073 - AluSg1 SINE Alu -19 290 1 330 149 205 0 chr1 172139450 172139553 -110054111 - AluJ/FRAM SINE Alu -4 298 227 1881 122 44 0 chr1 172139567 172139860 -110053804 - AluSx SINE Alu 0 305 1 256 234 106 11 chr1 172140225 172140319 -110053345 + L2 LINE L2 3152 3254 -18 338 70 0 0 chr1 172140325 172140368 -110053296 + Alu SINE Alu 1 43 -258 1723 79 0 9 chr1 172140368 172140582 -110053082 + AluSg/x SINE Alu 87 298 -14 479 205 103 8 chr1 172144173 172144290 -110049374 - MIR SINE MIR -72 190 63 2232 86 7 4 chr1 172146963 172147268 -110046396 - AluSg SINE Alu 0 306 1 297 0 0 0 chr1 172147948 172147981 -110045683 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 98 0 0 chr1 172148039 172148080 -110045584 + (TG)n Simple_repeat Simple_repeat 2 42 0 244 277 69 30 chr1 172149317 172149418 -110044246 - MIR SINE MIR -32 230 126 815 80 204 0 chr1 172150203 172150316 -110043348 - AluSq/x SINE Alu -176 136 1 2003 121 24 10 chr1 172150318 172150607 -110043057 - AluSx SINE Alu -13 299 7 188 286 181 9 chr1 172150618 172150723 -110042941 + L2 LINE L2 1825 1947 -1367 1274 164 0 27 chr1 172150732 172150951 -110042713 - AluJb SINE Alu -18 294 82 207 321 133 50 chr1 172150977 172151217 -110042447 + L2 LINE L2 2932 3191 -81 2275 96 7 7 chr1 172151255 172151547 -110042117 + AluSx SINE Alu 1 292 -20 288 326 22 11 chr1 172152695 172152787 -110040877 - MIR SINE MIR -76 132 40 2455 72 0 7 chr1 172152804 172153108 -110040556 - AluY SINE Alu -9 302 1 2062 120 7 13 chr1 172153618 172153917 -110039747 - AluSx SINE Alu -15 297 1 2446 59 0 3 chr1 172154898 172155209 -110038455 + AluY SINE Alu 1 310 0 2332 96 3 0 chr1 172155224 172155515 -110038149 + AluSg SINE Alu 1 292 -18 1721 168 0 21 chr1 172155695 172155986 -110037678 - AluSx SINE Alu -27 285 1 196 182 254 0 chr1 172156035 172156090 -110037574 - MIR SINE MIR -109 153 85 608 134 124 0 chr1 172156096 172156193 -110037471 - AluSg SINE Alu -199 111 3 2428 93 3 0 chr1 172156292 172156592 -110037072 - AluSp SINE Alu -6 307 7 2017 112 50 0 chr1 172156901 172157179 -110036485 + AluSg SINE Alu 1 292 -18 2379 110 0 0 chr1 172157241 172157540 -110036124 - AluSg SINE Alu -11 299 1 2385 103 3 0 chr1 172157933 172158235 -110035429 + AluSg SINE Alu 1 303 -7 1304 101 0 0 chr1 172158236 172158404 -110035260 + AluSg/x SINE Alu 135 302 -10 937 175 6 6 chr1 172159113 172159273 -110034391 - AluJb SINE Alu -1 311 152 2352 109 3 3 chr1 172159778 172160082 -110033582 + AluSx SINE Alu 1 304 -8 2395 88 0 3 chr1 172160244 172160538 -110033126 - AluSx SINE Alu -19 293 1 2179 138 32 5 chr1 172161277 172161677 -110031987 + L1MA4 LINE L1 5888 6298 -2 859 136 0 0 chr1 172161862 172161994 -110031670 + FLAM_C SINE Alu 1 132 -1 288 282 58 19 chr1 172163144 172163247 -110030417 + MIR SINE MIR 1 107 -155 322 132 0 19 chr1 172363247 172363300 -109830364 + AluSp/q SINE Alu 240 291 -12 2356 112 0 3 chr1 172363642 172363945 -109829719 - AluSq SINE Alu -11 302 1 2113 133 14 0 chr1 172363987 172364280 -109829384 - AluJb SINE Alu -15 297 1 989 165 50 16 chr1 172364357 172364539 -109829125 + MER5A DNA MER1_type 2 189 0 252 143 0 0 chr1 172366252 172366294 -109827370 + (T)n Simple_repeat Simple_repeat 1 42 0 410 252 0 61 chr1 172367054 172367185 -109826479 + MIR SINE MIR 50 172 -90 386 262 184 29 chr1 172367161 172367367 -109826297 - MIR SINE MIR 0 262 25 * 708 231 6 25 chr1 172367469 172367629 -109826035 + MIR SINE MIR 2 158 -104 712 242 84 14 chr1 172367629 172367696 -109825968 - MLT1F1 LTR MaLR 0 542 481 2244 95 25 0 chr1 172367696 172367981 -109825683 + AluSp SINE Alu 1 292 -21 712 242 84 14 chr1 172367981 172368128 -109825536 - MLT1F1 LTR MaLR -61 481 313 1946 162 28 0 chr1 172368129 172368419 -109825245 + AluJb SINE Alu 1 298 -14 2318 121 0 3 chr1 172368476 172368789 -109824875 + AluSx SINE Alu 1 312 0 2031 116 11 0 chr1 172368798 172369073 -109824591 + AluSp SINE Alu 34 311 -2 1044 253 66 14 chr1 172369107 172369396 -109824268 - MLT1F1 LTR MaLR -263 304 1 331 301 0 11 chr1 172369403 172369496 -109824168 + MIR SINE MIR 168 259 -3 401 293 0 19 chr1 172369880 172369986 -109823678 + MIR SINE MIR 82 185 -77 444 265 121 66 chr1 172369989 172370246 -109823418 - L2 LINE L2 -2 3311 3041 262 229 71 0 chr1 172370287 172370357 -109823307 + MIR SINE MIR 188 262 0 1923 151 0 17 chr1 172371248 172371546 -109822118 + AluSx SINE Alu 1 293 -19 2150 120 3 19 chr1 172371988 172372305 -109821359 - AluSq SINE Alu -1 312 1 2262 110 7 0 chr1 172372308 172372608 -109821056 - AluSg SINE Alu -8 302 1 2236 121 0 0 chr1 172372610 172372907 -109820757 - AluJb SINE Alu -15 297 1 270 0 0 0 chr1 172373942 172373972 -109819692 + (CA)n Simple_repeat Simple_repeat 2 31 0 2261 62 0 95 chr1 172374084 172374420 -109819244 - AluY SINE Alu -7 304 1 3221 147 56 29 chr1 172374496 172374553 -109819111 - L1MB7 LINE L1 -16 6168 6114 2129 107 35 3 chr1 172374553 172374842 -109818822 - AluSx SINE Alu -14 298 1 3221 147 56 29 chr1 172374842 172375430 -109818234 - L1MB7 LINE L1 -70 6114 5506 2147 133 3 3 chr1 172376992 172377293 -109816371 + AluSx SINE Alu 1 301 -11 343 164 41 27 chr1 172377486 172377559 -109816105 + AluJ SINE Alu 78 151 -151 463 174 70 0 chr1 172377576 172377662 -109816002 - MIR SINE MIR -123 139 48 651 158 142 0 chr1 172377663 172377783 -109815881 + AluJ SINE Alu 155 291 -21 403 198 174 0 chr1 172378052 172378173 -109815491 + MER104 DNA Tc2 35 176 -4 971 172 49 25 chr1 172378175 172378378 -109815286 - MIR SINE MIR -15 247 40 2508 82 0 0 chr1 172378746 172379052 -109814612 - AluY SINE Alu -5 306 1 721 215 27 7 chr1 172379150 172379299 -109814365 + MER5B DNA MER1_type 1 152 -26 430 181 0 69 chr1 172379303 172379329 -109814335 + MER97a DNA MER1_type? 72 98 -796 2377 113 0 0 chr1 172379329 172379639 -109814025 + AluSg SINE Alu 1 310 0 2289 113 0 0 chr1 172379646 172379948 -109813716 + AluY SINE Alu 1 302 -9 430 181 0 69 chr1 172379948 172380029 -109813635 + MER97a DNA MER1_type? 104 179 -715 753 269 48 24 chr1 172380332 172380581 -109813083 + Charlie8 DNA MER1_type 2 256 -2161 789 236 39 6 chr1 172380637 172380819 -109812845 - MIR SINE MIR -73 189 2 234 150 0 0 chr1 172382047 172382087 -109811577 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 383 232 32 21 chr1 172382651 172382746 -109810918 - MIR SINE MIR -13 249 154 28 0 0 0 chr1 172384782 172384810 -109808854 + AT_rich Low_complexity Low_complexity 1 28 0 2480 87 0 0 chr1 172385057 172385357 -109808307 - AluSg SINE Alu -10 300 1 929 167 26 6 chr1 172387979 172388135 -109805529 - FAM SINE Alu -17 168 10 1856 170 0 34 chr1 172388321 172388665 -109804999 - AluJb SINE Alu 0 333 1 545 183 152 6 chr1 172389306 172389470 -109804194 - MER112 DNA MER1_type -6 254 67 544 301 31 25 chr1 172389754 172389950 -109803714 + L2 LINE L2 3117 3313 0 22 35 0 0 chr1 172390570 172390599 -109803065 + AT_rich Low_complexity Low_complexity 1 29 0 275 143 0 0 chr1 172390604 172390646 -109803018 - MER57A LTR ERV1 -67 336 295 834 115 0 0 chr1 172390669 172390782 -109802882 - AluSx SINE Alu -6 303 191 902 112 67 15 chr1 172390783 172390917 -109802747 - AluSx SINE Alu -171 141 1 1948 150 6 13 chr1 172390934 172391248 -109802416 - AluSx SINE Alu 0 312 1 767 122 0 149 chr1 172391588 172391736 -109801928 + FLAM_C SINE Alu 2 127 -16 1871 59 0 0 chr1 172391938 172392157 -109801507 + AluY SINE Alu 83 301 -10 2384 81 0 0 chr1 172392267 172392576 -109801088 + AluSq SINE Alu 1 309 0 2383 77 0 13 chr1 172392700 172393000 -109800664 + AluSp SINE Alu 2 297 -16 2401 105 0 0 chr1 172393769 172394074 -109799590 + AluSg SINE Alu 1 305 -5 2825 159 26 2 chr1 172394074 172394571 -109799093 - L1MD1 LINE L1 -31 6211 5703 403 153 18 27 chr1 172394573 172394684 -109798980 + CT-rich Low_complexity Low_complexity 1 110 0 1197 210 16 23 chr1 172394703 172394960 -109798704 - AluJb SINE Alu -34 278 24 1949 146 3 17 chr1 172394960 172395261 -109798403 + AluSx SINE Alu 1 297 -15 1875 119 21 65 chr1 172395294 172395681 -109797983 - L1MDa LINE L1 -4058 2482 2113 2205 165 69 54 chr1 172396274 172396868 -109796796 - L1MDa LINE L1 -4411 2129 1527 2283 116 0 0 chr1 172397054 172397357 -109796307 - AluSx SINE Alu -9 303 1 229 371 57 6 chr1 172397633 172397792 -109795872 - L2 LINE L2 -226 3087 2921 242 203 139 13 chr1 172397820 172397899 -109795765 - L2 LINE L2 -458 2856 2768 2339 92 0 7 chr1 172398060 172398363 -109795301 - AluSx SINE Alu -6 306 6 321 268 0 10 chr1 172398680 172398777 -109794887 - LTR67 LTR ERVL -17 540 445 185 128 0 26 chr1 172399104 172399143 -109794521 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 2029 152 7 0 chr1 172399150 172399446 -109794218 - AluJo SINE Alu -14 298 1 2222 107 0 0 chr1 172399482 172399762 -109793902 - AluSx SINE Alu -32 280 1 410 117 17 0 chr1 172399773 172399833 -109793831 - AluSp/q SINE Alu -23 290 230 630 246 128 38 chr1 172399837 172400150 -109793514 - HAL1 LINE L1 -11 2496 2156 867 245 26 71 chr1 172400165 172400194 -109793470 + MIR SINE MIR 6 35 -227 2319 107 3 0 chr1 172400194 172400492 -109793172 + AluSp SINE Alu 1 299 -14 867 245 26 71 chr1 172400492 172400731 -109792933 + MIR SINE MIR 35 262 0 206 231 0 0 chr1 172401262 172401301 -109792363 + CT-rich Low_complexity Low_complexity 2 40 0 2936 144 33 16 chr1 172401532 172402079 -109791585 - L1MB7 LINE L1 -10 6174 5619 2441 100 0 0 chr1 172403457 172403766 -109789898 - AluSc SINE Alu 0 309 1 405 166 66 16 chr1 172404778 172404891 -109788773 - MIR SINE MIR -61 147 32 1889 166 3 0 chr1 172404898 172405187 -109788477 - AluJb SINE Alu -22 290 1 1658 122 0 4 chr1 172405268 172405498 -109788166 - AluSq SINE Alu -84 229 1 2301 128 0 0 chr1 172405505 172405810 -109787854 - AluSx SINE Alu -7 305 1 390 218 48 16 chr1 172405814 172405938 -109787726 - L1ME1 LINE L1 -280 5886 5759 1019 171 6 0 chr1 172405942 172406100 -109787564 + AluJb SINE Alu 132 290 -22 265 302 8 10 chr1 172406103 172406227 -109787437 - L1ME1 LINE L1 -391 5779 5655 285 231 66 0 chr1 172406243 172406364 -109787300 - L1M2 LINE L1 -867 5445 5317 199 252 252 36 chr1 172406487 172406598 -109787066 - L2 LINE L2 -4 3309 3175 184 342 13 13 chr1 172406711 172406787 -109786877 - L2 LINE L2 -260 3012 2937 1952 191 43 51 chr1 172406994 172407507 -109786157 - L1ME3A LINE L1 0 6170 5662 362 156 91 0 chr1 172407512 172407589 -109786075 - LTR48B LTR ERV1 -5 639 556 2714 49 0 0 chr1 172407589 172407896 -109785768 + AluSq SINE Alu 3 309 -4 2369 176 101 9 chr1 172407897 172408441 -109785223 - L1MCa LINE L1 -5571 855 262 814 188 0 0 chr1 172408554 172408692 -109784972 + AluSg/x SINE Alu 162 299 -11 22 35 0 0 chr1 172408746 172408775 -109784889 + AT_rich Low_complexity Low_complexity 1 29 0 2430 54 0 48 chr1 172408896 172409210 -109784454 + AluSx SINE Alu 10 308 -4 2727 121 51 57 chr1 172409211 172409574 -109784090 - MER39B LTR ERV1 -91 616 263 2201 90 17 3 chr1 172409574 172409862 -109783802 - AluSg SINE Alu -18 292 1 2727 121 51 57 chr1 172409862 172410124 -109783540 - MER39B LTR ERV1 -444 263 1 677 311 22 25 chr1 172410124 172410491 -109783173 - L1ME3A LINE L1 -504 5662 5297 1380 165 15 11 chr1 172410512 172410779 -109782885 - L1MD3 LINE L1 0 7995 7728 266 221 91 0 chr1 172410781 172410858 -109782806 - L1ME3A LINE L1 -862 5284 5201 2143 119 20 10 chr1 172410866 172411168 -109782496 - AluSg SINE Alu -5 305 1 1277 132 0 0 chr1 172411171 172411345 -109782319 - AluSg/x SINE Alu -4 306 133 233 180 109 55 chr1 172411385 172411513 -109782151 - L1ME1 LINE L1 -2381 5427 5293 1183 227 101 18 chr1 172411518 172411795 -109781869 - AluJo SINE Alu 0 302 3 2348 92 0 16 chr1 172411996 172412300 -109781364 + AluSx SINE Alu 1 299 -13 185 296 102 11 chr1 172412681 172412769 -109780895 + MIR SINE MIR 36 131 -77 822 155 0 42 chr1 172413112 172413254 -109780410 - FLAM_C SINE Alu -7 136 1 2331 107 0 16 chr1 172413337 172413654 -109780010 + AluSx SINE Alu 1 312 0 717 316 72 30 chr1 172414039 172414472 -109779192 + LTR16B LTR ERVL 14 464 0 912 296 98 6 chr1 172414707 172415045 -109778619 + HERV16 LTR ERVL 261 629 -4367 1547 250 94 56 chr1 172415115 172415354 -109778310 + HERV16 LTR ERVL 781 1010 -3986 2435 83 3 0 chr1 172415354 172415654 -109778010 + AluSp SINE Alu 3 303 -10 1547 250 94 56 chr1 172415654 172415849 -109777815 + HERV16 LTR ERVL 1010 1196 -3800 2130 95 18 11 chr1 172415849 172416003 -109777661 - AluSx SINE Alu -21 291 133 2376 89 0 22 chr1 172416003 172416319 -109777345 - AluY SINE Alu -2 309 1 2130 95 18 11 chr1 172416319 172416448 -109777216 - AluSx SINE Alu -179 133 6 1547 250 94 56 chr1 172416448 172416651 -109777013 + HERV16 LTR ERVL 1196 1443 -3553 1094 286 107 30 chr1 172416697 172417165 -109776499 + HERV16 LTR ERVL 1572 2075 -2921 1481 305 19 10 chr1 172417168 172417585 -109776079 + HERV16 LTR ERVL 2666 3086 -1910 599 284 32 69 chr1 172417749 172417898 -109775766 + HERV16 LTR ERVL 4505 4658 -338 2161 118 7 0 chr1 172417898 172418195 -109775469 - AluSq SINE Alu -7 306 8 599 284 32 69 chr1 172418195 172418481 -109775183 + HERV16 LTR ERVL 4658 4924 -72 436 299 96 25 chr1 172418590 172418914 -109774750 + LTR16B LTR ERVL 37 460 -4 225 247 12 24 chr1 172418957 172419042 -109774622 + (TA)n Simple_repeat Simple_repeat 1 84 0 2343 107 0 0 chr1 172419043 172419341 -109774323 - AluSg SINE Alu -12 298 1 2256 90 17 0 chr1 172419344 172419633 -109774031 - AluY SINE Alu -17 294 1 2591 75 0 0 chr1 172419635 172419940 -109773724 - AluSx SINE Alu -6 306 2 2639 46 0 7 chr1 172419945 172420251 -109773413 - AluY SINE Alu -7 304 1 2329 97 7 3 chr1 172420457 172420756 -109772908 + AluSx SINE Alu 1 300 -12 312 83 0 0 chr1 172420756 172420804 -109772860 + (TA)n Simple_repeat Simple_repeat 2 49 0 182 304 109 0 chr1 172421872 172421964 -109771700 + L3b LINE CR1 1284 1385 -198 361 226 152 67 chr1 172422464 172422526 -109771138 - MLT1J1 LTR MaLR 0 446 391 2123 125 3 10 chr1 172422526 172422829 -109770835 + AluSx SINE Alu 3 303 -9 361 226 152 67 chr1 172422829 172422930 -109770734 - MLT1J1 LTR MaLR -55 391 269 521 213 102 72 chr1 172422992 172423105 -109770559 + MER5C DNA MER1_type 10 118 -206 2334 84 3 3 chr1 172423105 172423401 -109770263 + AluSq SINE Alu 1 296 -17 521 213 102 72 chr1 172423401 172423458 -109770206 + MER5C DNA MER1_type 118 172 -152 2013 109 38 0 chr1 172423458 172423723 -109769941 + AluSx SINE Alu 1 275 -37 521 213 102 72 chr1 172423723 172423786 -109769878 + MER5C DNA MER1_type 172 251 -73 1925 102 0 109 chr1 172424201 172424536 -109769128 + AluSg SINE Alu 2 302 0 2229 128 0 3 chr1 172424693 172424990 -109768674 + AluSx SINE Alu 1 296 -16 848 165 0 0 chr1 172425101 172425228 -109768436 + FLAM_C SINE Alu 5 131 -2 213 39 0 0 chr1 172425239 172425265 -109768399 + (A)n Simple_repeat Simple_repeat 1 26 0 1001 157 0 13 chr1 172425620 172425773 -109767891 + AluJb SINE Alu 1 151 -161 1473 153 4 13 chr1 172425797 172426033 -109767631 + AluYa5 SINE Alu 3 236 -75 2304 90 0 19 chr1 172426033 172426344 -109767320 + AluSg SINE Alu 1 305 -5 1023 166 78 37 chr1 172426369 172426586 -109767078 + AluJo SINE Alu 85 310 -2 425 229 82 8 chr1 172426596 172426613 -109767051 + MER5C DNA MER1_type 192 206 -118 207 0 0 0 chr1 172426613 172426636 -109767028 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 425 229 82 8 chr1 172426636 172426740 -109766924 + MER5C DNA MER1_type 206 322 -2 443 224 24 31 chr1 172426740 172426891 -109766773 - MLT1J1 LTR MaLR -297 153 3 312 377 24 19 chr1 172427255 172427462 -109766202 + L2 LINE L2 2739 2946 -368 2564 49 0 16 chr1 172428136 172428442 -109765222 - AluY SINE Alu -10 301 1 941 145 14 0 chr1 172428464 172428602 -109765062 + AluJb SINE Alu 87 226 -86 297 0 0 0 chr1 172428618 172428651 -109765013 + (CA)n Simple_repeat Simple_repeat 1 33 0 290 284 34 23 chr1 172429062 172429150 -109764514 + MIR SINE MIR 86 174 -88 239 0 0 31 chr1 172429689 172429721 -109763943 + (TC)n Simple_repeat Simple_repeat 2 32 0 670 183 15 36 chr1 172430192 172430329 -109763335 - AluJo SINE Alu -178 134 1 21 0 0 0 chr1 172430337 172430358 -109763306 + AT_rich Low_complexity Low_complexity 1 21 0 1837 155 53 12 chr1 172430470 172430792 -109762872 + MER7A DNA MER2_type 14 346 0 513 266 7 19 chr1 172430842 172430996 -109762668 - L1ME LINE L1 -459 5662 5511 330 303 60 56 chr1 172431347 172431581 -109762083 + L2 LINE L2 3046 3280 -33 226 247 148 12 chr1 172432281 172432362 -109761302 + L2 LINE L2 3181 3272 0 250 192 40 7 chr1 172433088 172433223 -109760441 + CT-rich Low_complexity Low_complexity 1 139 0 186 43 0 0 chr1 172433450 172433473 -109760191 + (TC)n Simple_repeat Simple_repeat 1 23 0 844 230 6 0 chr1 172433608 172433782 -109759882 - MER5B DNA MER1_type 0 178 4 330 260 21 39 chr1 172433866 172434047 -109759617 - L1MC4a LINE L1 -162 5959 5779 297 75 0 0 chr1 172434047 172434087 -109759577 + (ATTG)n Simple_repeat Simple_repeat 4 43 0 1577 144 86 4 chr1 172434087 172434344 -109759320 - AluJb SINE Alu -34 278 1 1627 187 0 70 chr1 172434347 172434678 -109758986 - AluJb SINE Alu -4 308 1 2227 120 0 0 chr1 172434691 172434990 -109758674 - AluSx SINE Alu -13 299 1 301 186 47 47 chr1 172435025 172435154 -109758510 - L1ME4a LINE L1 -1 6120 5992 341 213 8 165 chr1 172435584 172435711 -109757953 - L1ME4a LINE L1 -215 5906 5800 203 295 16 16 chr1 172436389 172436450 -109757214 - L2 LINE L2 -87 3185 3125 334 316 96 50 chr1 172437045 172437346 -109756318 + L2 LINE L2 2956 3270 -2 2157 104 0 0 chr1 172437454 172437724 -109755940 - AluSc SINE Alu -39 270 1 1840 175 7 0 chr1 172437854 172438151 -109755513 - AluJo SINE Alu -13 299 1 381 277 34 8 chr1 172438421 172438540 -109755124 + MIR SINE MIR 91 212 -50 223 297 152 36 chr1 172438752 172438890 -109754774 + L3b LINE CR1 1283 1436 -147 1638 158 20 37 chr1 172439059 172439357 -109754307 + AluJo SINE Alu 2 294 -18 24 0 0 0 chr1 172439365 172439389 -109754275 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr1 172439629 172439674 -109753990 + AT_rich Low_complexity Low_complexity 1 45 0 316 260 208 0 chr1 172440140 172440236 -109753428 + MIR3 SINE MIR 47 162 -46 287 217 12 72 chr1 172440466 172440549 -109753115 - L2 LINE L2 -224 3048 2971 2361 87 3 0 chr1 172440620 172440918 -109752746 + AluSp SINE Alu 14 312 -1 191 293 27 40 chr1 172441630 172441705 -109751959 - L3b LINE CR1 -120 1463 1390 365 271 17 34 chr1 172442532 172442650 -109751014 + L3 LINE CR1 1370 1485 -92 954 222 56 42 chr1 172443466 172443772 -109749892 - MER21B LTR ERV1 -57 806 497 2132 90 41 14 chr1 172443777 172444067 -109749597 - AluSx SINE Alu -12 300 3 830 152 0 0 chr1 172444093 172444218 -109749446 - FLAM_C SINE Alu -18 125 1 1390 186 205 31 chr1 172444218 172444633 -109749031 - MER21B LTR ERV1 -359 504 18 1769 171 20 30 chr1 172444887 172445191 -109748473 + AluJb SINE Alu 3 303 -9 561 305 48 11 chr1 172445205 172445392 -109748272 - L3 LINE CR1 -105 1472 1279 188 182 242 30 chr1 172445384 172445450 -109748214 + MIR3 SINE MIR 101 180 -28 * 1782 112 0 0 chr1 172445458 172445690 -109747974 - AluSg/x SINE Alu -16 296 65 406 236 113 0 chr1 172446418 172446524 -109747140 + L2 LINE L2 3196 3313 0 979 169 38 38 chr1 172447523 172447706 -109745958 + AluJo SINE Alu 1 183 -129 1982 164 3 19 chr1 172447808 172448125 -109745539 - AluJo SINE Alu 0 312 1 2421 84 3 0 chr1 172448329 172448628 -109745036 + AluSq SINE Alu 1 300 -13 594 187 66 111 chr1 172449300 172449401 -109744263 + MIR SINE MIR 13 102 -160 2061 159 0 3 chr1 172449401 172449703 -109743961 + AluJb SINE Alu 6 306 -6 594 187 66 111 chr1 172449703 172449799 -109743865 + MIR SINE MIR 102 201 -61 303 231 15 15 chr1 172449801 172449866 -109743798 + L1ME3 LINE L1 6070 6134 -28 1972 133 39 0 chr1 172449868 172450154 -109743510 + AluSx SINE Alu 1 297 -15 490 252 65 93 chr1 172450327 172450617 -109743047 + L2 LINE L2 3023 3304 -9 294 143 0 0 chr1 172453685 172453734 -109739930 + (TTCGGG)n Simple_repeat Simple_repeat 1 49 0 432 0 0 0 chr1 172454087 172454135 -109739529 + (TA)n Simple_repeat Simple_repeat 2 49 0 2275 107 0 0 chr1 172454248 172454558 -109739106 - AluY SINE Alu 0 311 2 440 59 29 0 chr1 172454653 172454721 -109738943 - MLT1D LTR MaLR 0 505 436 976 189 6 0 chr1 172454723 172454882 -109738782 + AluJo SINE Alu 3 162 -150 645 219 7 0 chr1 172455427 172455564 -109738100 - L1MA10 LINE L1 0 6334 6197 1989 125 54 0 chr1 172456066 172456345 -109737319 + AluSx SINE Alu 2 295 -17 877 149 0 22 chr1 172456372 172456506 -109737158 - FLAM_C SINE Alu 0 133 3 585 218 14 35 chr1 172456567 172456709 -109736955 - L2 LINE L2 -6 3307 3169 2239 110 40 0 chr1 172456827 172457126 -109736538 - AluSx SINE Alu -1 311 1 2429 60 3 0 chr1 172457689 172457974 -109735690 - AluY SINE Alu -25 286 1 1759 157 101 46 chr1 172458321 172458736 -109734928 - MER21B LTR ERV1 -1 862 425 1034 137 55 143 chr1 172458732 172458875 -109734789 - MER21A LTR ERV1 -632 299 145 * 1780 173 11 0 chr1 172458875 172459183 -109734481 + AluJo SINE Alu 1 311 0 1034 137 55 143 chr1 172459183 172459274 -109734390 - MER21A LTR ERV1 -786 145 91 2639 71 3 0 chr1 172459274 172459585 -109734079 + AluSp SINE Alu 1 312 -1 1034 137 55 143 chr1 172459585 172459640 -109734024 - MER21A LTR ERV1 -840 91 33 1284 120 5 14 chr1 172459777 172459993 -109733671 + L1MC3 LINE L1 7480 7693 -92 1883 103 0 0 chr1 172459993 172460226 -109733438 + AluSq SINE Alu 1 233 -80 2293 92 14 0 chr1 172460341 172460624 -109733040 - AluSx SINE Alu -15 297 11 2204 80 52 3 chr1 172460632 172460918 -109732746 - AluSq SINE Alu -13 300 1 870 212 0 0 chr1 172460952 172461117 -109732547 + FAM SINE Alu 3 167 -8 201 374 9 47 chr1 172461251 172461358 -109732306 + L2 LINE L2 2443 2545 -769 2408 102 0 3 chr1 172461381 172461694 -109731970 - AluSx SINE Alu 0 312 1 583 261 58 55 chr1 172461807 172461825 -109731839 + L1MC/D LINE L1 5267 5283 -2525 1293 198 106 25 chr1 172461825 172462108 -109731556 + AluJo SINE Alu 1 306 -6 583 261 58 55 chr1 172462108 172462252 -109731412 + L1MC/D LINE L1 5283 5425 -2383 1900 158 24 0 chr1 172462252 172462549 -109731115 + AluJb SINE Alu 1 304 -8 583 261 58 55 chr1 172462549 172462710 -109730954 + L1MC/D LINE L1 5425 5592 -2216 2275 110 0 3 chr1 172462727 172463037 -109730627 + AluSc SINE Alu 1 309 0 2087 164 3 0 chr1 172463052 172463362 -109730302 + AluJb SINE Alu 1 311 -1 239 227 15 0 chr1 172463362 172463428 -109730236 + GA-rich Low_complexity Low_complexity 1 67 0 901 40 0 0 chr1 172463442 172463541 -109730123 + AluYb8 SINE Alu 37 135 -183 1154 163 0 0 chr1 172463684 172463850 -109729814 - AluJo SINE Alu -142 170 5 28 71 0 0 chr1 172464233 172464289 -109729375 + AT_rich Low_complexity Low_complexity 1 56 0 851 221 132 5 chr1 172464293 172464506 -109729158 - MIR SINE MIR -18 244 5 375 284 37 28 chr1 172465002 172465111 -109728553 + MIR SINE MIR 9 118 -144 738 239 56 0 chr1 172465151 172465331 -109728333 - MIR SINE MIR 0 262 73 1408 167 53 4 chr1 172465473 172465718 -109727946 + AluJb SINE Alu 1 257 -55 2297 121 0 3 chr1 172465763 172466076 -109727588 - AluSx SINE Alu 0 312 1 180 326 11 34 chr1 172466084 172466173 -109727491 + L2 LINE L2 3227 3313 0 2429 97 7 0 chr1 172468591 172468901 -109724763 - AluSx SINE Alu 0 312 1 286 214 12 60 chr1 172469105 172469189 -109724475 + MIR3 SINE MIR 112 191 -17 21 0 0 0 chr1 172469218 172469239 -109724425 + AT_rich Low_complexity Low_complexity 1 21 0 2018 103 4 7 chr1 172471005 172471286 -109722378 + AluSx SINE Alu 1 280 -32 2119 146 0 0 chr1 172472033 172472342 -109721322 - AluSx SINE Alu -3 309 1 264 217 0 14 chr1 172472351 172472420 -109721244 - MER112 DNA MER1_type -163 97 30 2189 105 47 0 chr1 172472593 172472889 -109720775 + AluSx SINE Alu 1 310 -2 296 294 169 22 chr1 172473068 172473299 -109720365 + L3 LINE CR1 1200 1464 -113 2004 133 10 3 chr1 172473791 172474084 -109719580 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr1 172474125 172474147 -109719517 + AT_rich Low_complexity Low_complexity 1 22 0 2294 98 0 0 chr1 172474431 172474718 -109718946 + AluSx SINE Alu 1 287 -25 186 243 10 117 chr1 172474748 172474851 -109718813 - L2 LINE L2 -14 3299 3208 557 265 63 14 chr1 172475050 172475273 -109718391 + L1ME4a LINE L1 5692 5925 -196 2163 125 0 16 chr1 172476055 172476368 -109717296 - AluSx SINE Alu -4 308 1 561 184 28 50 chr1 172476409 172476550 -109717114 + L2 LINE L2 3167 3304 -9 212 320 73 107 chr1 172476852 172477124 -109716540 + L2 LINE L2 3000 3262 -10 1271 139 74 5 chr1 172477131 172477346 -109716318 - MER30 DNA MER1_type 0 230 1 213 209 0 0 chr1 172477537 172477580 -109716084 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 388 264 107 38 chr1 172477591 172477750 -109715914 + MIR SINE MIR 1 170 -92 399 276 60 15 chr1 172477772 172477906 -109715758 - MIR SINE MIR -104 158 19 2196 119 0 0 chr1 172478033 172478354 -109715310 + AluSq SINE Alu 1 321 0 1950 112 70 13 chr1 172478475 172478787 -109714877 + MER4B LTR ERV1 1 330 -280 364 137 0 0 chr1 172478789 172478840 -109714824 - MER4E LTR ERV1 -70 696 646 351 0 0 0 chr1 172479013 172479052 -109714612 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2062 126 0 18 chr1 172479054 172479339 -109714325 - AluSx SINE Alu -32 280 1 2399 83 0 16 chr1 172479354 172479667 -109713997 - AluSq SINE Alu -3 310 3 301 321 19 12 chr1 172479764 172479926 -109713738 + GA-rich Low_complexity Low_complexity 2 164 0 509 284 102 0 chr1 172480017 172480193 -109713471 - L2 LINE L2 -571 2743 2550 892 177 112 56 chr1 172480312 172480527 -109713137 + AluJb SINE Alu 85 311 -1 1198 170 47 77 chr1 172480573 172480726 -109712938 + MER33 DNA MER1_type 1 150 -2435 1911 135 24 7 chr1 172480726 172481022 -109712642 + AluJb SINE Alu 12 312 0 1198 170 47 77 chr1 172481022 172481209 -109712455 + MER33 DNA MER1_type 150 324 0 198 288 125 0 chr1 172482523 172482603 -109711061 - L2 LINE L2 -1 3271 3182 218 273 61 0 chr1 172482879 172482945 -109710719 + L3b LINE CR1 1276 1345 -238 21 0 0 0 chr1 172483630 172483651 -109710013 + GC_rich Low_complexity Low_complexity 1 21 0 294 200 0 88 chr1 172484285 172484365 -109709299 - MIR3 SINE MIR -47 161 89 208 331 92 35 chr1 172484697 172484776 -109708888 + MIR3 SINE MIR 52 125 -83 414 0 0 0 chr1 172484776 172484822 -109708842 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 208 331 92 35 chr1 172484822 172484884 -109708780 + MIR3 SINE MIR 125 201 -7 2078 147 0 6 chr1 172485346 172485660 -109708004 + AluJb SINE Alu 1 312 0 204 40 0 0 chr1 172485830 172485855 -109707809 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2319 92 0 0 chr1 172485858 172486141 -109707523 - AluSg SINE Alu -27 283 1 2218 102 17 0 chr1 172486321 172486614 -109707050 + AluSx SINE Alu 1 298 -14 218 198 129 40 chr1 172486644 172486745 -109706919 + MIR SINE MIR 42 151 -57 701 318 23 63 chr1 172487087 172487486 -109706178 + L2 LINE L2 2885 3267 -5 2144 125 6 31 chr1 172488563 172488612 -109705052 - L1MB3 LINE L1 -2 6181 6132 2541 51 0 0 chr1 172488612 172488905 -109704759 - AluY SINE Alu -18 293 1 2144 125 6 31 chr1 172488905 172489214 -109704450 - L1MB3 LINE L1 -51 6132 5832 2360 96 3 0 chr1 172489220 172489523 -109704141 - AluSx SINE Alu -7 305 2 616 260 62 66 chr1 172489644 172489917 -109703747 + MLT1L LTR MaLR 9 280 -335 6926 65 5 54 chr1 172490075 172491794 -109701870 + SVA Other Other 23 1384 -2 730 209 85 98 chr1 172491797 172491991 -109701673 + MLT1L LTR MaLR 305 495 -120 1960 141 3 3 chr1 172491991 172492288 -109701376 + AluJo SINE Alu 5 301 -11 730 209 85 98 chr1 172492288 172492400 -109701264 + MLT1L LTR MaLR 495 607 -8 2409 93 3 0 chr1 172492809 172493111 -109700553 - AluSp SINE Alu -10 303 1 189 107 0 0 chr1 172493417 172493445 -109700219 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2267 109 0 0 chr1 172493458 172493775 -109699889 + AluSx SINE Alu 1 317 0 2154 52 56 31 chr1 172493777 172494101 -109699563 + AluY SINE Alu 1 331 0 1768 172 0 4 chr1 172494103 172494382 -109699282 - AluJo SINE Alu -34 278 1 371 216 91 0 chr1 172494427 172494515 -109699149 + MLT1K LTR MaLR 492 587 -1 1675 178 30 10 chr1 172494746 172495044 -109698620 - AluJo SINE Alu -6 306 3 220 264 28 14 chr1 172495088 172495160 -109698504 + MIR SINE MIR 64 136 -72 2158 107 27 10 chr1 172495250 172495548 -109698116 + AluSx SINE Alu 1 303 -9 186 338 15 0 chr1 172495552 172495620 -109698044 - MIR SINE MIR -31 231 163 364 62 0 108 chr1 172495806 172495840 -109697824 + Alu SINE Alu 243 268 -32 1945 99 38 76 chr1 172495840 172496154 -109697510 - AluSx SINE Alu -9 303 2 364 62 0 108 chr1 172496154 172496184 -109697480 + Alu SINE Alu 268 300 0 2164 213 67 26 chr1 172496229 172496764 -109696900 - MLT1E LTR MaLR -6 587 31 214 331 54 31 chr1 172496826 172496956 -109696708 - L2 LINE L2 -220 3052 2920 220 307 27 0 chr1 172497072 172497147 -109696517 + MIR SINE MIR 20 96 -112 249 328 104 54 chr1 172497284 172497999 -109695665 + L2 LINE L2 2029 2808 -464 2472 48 0 48 chr1 172497999 172498309 -109695355 - AluY SINE Alu -16 295 1 249 328 104 54 chr1 172498309 172498575 -109695089 + L2 LINE L2 2808 3059 -213 300 233 110 31 chr1 172498783 172498946 -109694718 - L1MC4a LINE L1 -1633 6175 6000 1070 134 43 0 chr1 172498986 172499150 -109694514 - AluSc SINE Alu -8 301 131 2487 93 0 0 chr1 172499150 172499462 -109694202 - AluSx SINE Alu 0 312 1 879 245 72 45 chr1 172499473 172499804 -109693860 - L1MC4a LINE L1 -1878 5930 5591 992 197 6 0 chr1 172500161 172500339 -109693325 - AluJb SINE Alu -19 293 115 1032 114 7 0 chr1 172500357 172500497 -109693167 - AluJo SINE Alu -171 141 1 3606 112 37 96 chr1 172500513 172500813 -109692851 - Tigger3b DNA MER2_type -2340 688 372 2244 115 0 10 chr1 172500813 172501126 -109692538 + AluSq SINE Alu 1 310 -3 3606 112 37 96 chr1 172501126 172501556 -109692108 - Tigger3b DNA MER2_type -2656 372 1 190 218 158 59 chr1 172501605 172501706 -109691958 + MIR SINE MIR 67 177 -85 261 217 48 48 chr1 172502062 172502145 -109691519 - MIR SINE MIR -110 152 70 556 230 72 51 chr1 172502656 172502775 -109690889 + MLT1E LTR MaLR 108 264 -362 2151 120 0 3 chr1 172502775 172503075 -109690589 + AluSg SINE Alu 1 299 -11 556 230 72 51 chr1 172503075 172503145 -109690519 + MLT1E LTR MaLR 264 331 -295 332 308 8 8 chr1 172503816 172503933 -109689731 - MIR SINE MIR -36 226 110 741 112 0 0 chr1 172503944 172504042 -109689622 + L1P LINE L1 1 98 -6048 * 3390 105 19 18 chr1 172504040 172504553 -109689111 + L1P LINE L1 847 1360 -4786 917 168 0 13 chr1 172504943 172505098 -109688566 - FAM SINE Alu -9 40 1 366 252 204 7 chr1 172505884 172506031 -109687633 + MER5B DNA MER1_type 2 177 -1 430 257 41 35 chr1 172506074 172506245 -109687419 + MIR SINE MIR 36 207 -55 233 296 58 47 chr1 172506349 172506521 -109687143 + MIR SINE MIR 40 213 -49 989 213 19 52 chr1 172507484 172507799 -109685865 + L1MC5 LINE L1 6674 7075 -967 336 181 44 44 chr1 172507801 172507961 -109685703 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 561 250 31 80 chr1 172507961 172508185 -109685479 + L1MC5 LINE L1 7009 7221 -740 1079 269 83 33 chr1 172508215 172508594 -109685070 + L1MC5 LINE L1 7262 7580 -381 2446 74 3 0 chr1 172508594 172508890 -109684774 + AluY SINE Alu 1 297 -14 1079 269 83 33 chr1 172508890 172509213 -109684451 + L1MC5 LINE L1 7580 7885 -76 2287 86 0 10 chr1 172509260 172509552 -109684112 + AluSc SINE Alu 1 289 -20 356 184 66 0 chr1 172509640 172509716 -109683948 - MIR SINE MIR 0 262 182 327 296 32 40 chr1 172510707 172510832 -109682832 - L2 LINE L2 0 3313 3190 2158 107 4 0 chr1 172512496 172512806 -109680858 + AluSx SINE Alu 1 311 0 2254 56 0 8 chr1 172513082 172513349 -109680315 + AluSc SINE Alu 24 288 -21 1961 97 0 16 chr1 172514019 172514277 -109679387 - AluSx SINE Alu -11 301 48 628 267 63 28 chr1 172514336 172514570 -109679094 - MARNA DNA Mariner -198 388 143 1659 154 27 24 chr1 172514570 172514863 -109678801 + AluJb SINE Alu 1 294 -18 628 267 63 28 chr1 172514863 172514883 -109678781 - MARNA DNA Mariner -443 143 125 28 79 0 0 chr1 172515065 172515128 -109678536 + AT_rich Low_complexity Low_complexity 1 63 0 740 270 124 45 chr1 172515131 172515799 -109677865 - L1ME3A LINE L1 -233 5941 5032 2394 70 3 3 chr1 172515799 172516100 -109677564 - AluY SINE Alu -10 301 1 740 270 124 45 chr1 172516100 172516199 -109677465 - L1ME3A LINE L1 -1142 5032 4942 2163 279 53 30 chr1 172516296 172517142 -109676522 + L1MEc LINE L1 77 942 -5454 1077 208 148 27 chr1 172517166 172517464 -109676200 + MSTD LTR MaLR 63 396 0 2374 233 71 72 chr1 172517510 172517912 -109675752 + L1MCc LINE L1 653 1054 -5534 2386 96 0 0 chr1 172517912 172518215 -109675449 + AluSc SINE Alu 1 303 -6 1757 187 3 10 chr1 172518222 172518527 -109675137 + AluJb SINE Alu 1 303 -9 2374 233 71 72 chr1 172518527 172518817 -109674847 + L1MCc LINE L1 1060 1349 -5239 2311 103 7 0 chr1 172518817 172519119 -109674545 + AluSp SINE Alu 1 304 -9 2374 233 71 72 chr1 172519119 172519332 -109674332 + L1MCc LINE L1 1349 1571 -5017 2248 101 0 16 chr1 172519332 172519640 -109674024 + AluSg SINE Alu 1 303 -7 2374 233 71 72 chr1 172519640 172519756 -109673908 + L1MCc LINE L1 1571 1686 -4902 498 58 10 48 chr1 172519807 172519910 -109673754 + SVA Other Other 1 99 -1287 203 243 0 0 chr1 172520522 172520559 -109673105 + (CATG)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr1 172521280 172521304 -109672360 + AT_rich Low_complexity Low_complexity 1 24 0 1665 167 18 4 chr1 172521774 172522055 -109671609 + AluJo SINE Alu 25 309 -3 2849 3 0 7 chr1 172522324 172522632 -109671032 + AluYa5 SINE Alu 1 306 -5 767 120 105 125 chr1 172522732 172522932 -109670732 - MSTB1 LTR MaLR 0 432 237 515 136 0 12 chr1 172522926 172523007 -109670657 - MSTB1 LTR MaLR -352 80 1 * 181 300 114 0 chr1 172523476 172523546 -109670118 + MIR SINE MIR 66 143 -65 1927 244 80 34 chr1 172523703 172523832 -109669832 - HAL1 LINE L1 -12 2495 2373 212 59 29 0 chr1 172523832 172523866 -109669798 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1927 244 80 34 chr1 172523866 172524497 -109669167 - HAL1 LINE L1 -134 2373 1700 * 10982 197 35 35 chr1 172524494 172524533 -109669131 - L1M1 LINE L1 -821 6744 6707 6774 88 7 2 chr1 172524533 172525421 -109668243 - L1MA2 LINE L1 0 6304 5413 10982 197 35 35 chr1 172525421 172526013 -109667651 - L1M1 LINE L1 -858 6707 6117 1764 158 13 7 chr1 172526013 172526316 -109667348 - AluJo SINE Alu -3 309 5 10982 197 35 35 chr1 172526316 172529235 -109664429 - L1M1 LINE L1 -1448 6117 3153 681 167 0 19 chr1 172529282 172529390 -109664274 - AluJb SINE Alu -205 107 2 1212 273 86 42 chr1 172529391 172529473 -109664191 - HAL1 LINE L1 -2056 451 374 2422 78 0 3 chr1 172529473 172529769 -109663895 - AluSc SINE Alu -13 296 2 1212 273 86 42 chr1 172529769 172530118 -109663546 - HAL1 LINE L1 -2133 374 1 505 192 0 48 chr1 172530332 172530461 -109663203 - FLAM_A SINE Alu 0 139 16 1768 156 46 20 chr1 172530541 172530901 -109662763 - AluJo SINE Alu 0 370 3 23 0 0 0 chr1 172531049 172531072 -109662592 + AT_rich Low_complexity Low_complexity 1 23 0 2146 137 0 0 chr1 172531083 172531390 -109662274 - AluJb SINE Alu -5 307 1 328 340 48 35 chr1 172531532 172531718 -109661946 - L1M4 LINE L1 -1120 5026 4833 180 0 0 0 chr1 172531718 172531738 -109661926 + (TG)n Simple_repeat Simple_repeat 2 21 0 328 340 48 35 chr1 172531738 172531863 -109661801 - L1M4 LINE L1 -1313 4833 4711 1112 100 0 13 chr1 172532125 172532275 -109661389 + AluSg/x SINE Alu 154 301 -11 2303 76 0 30 chr1 172533358 172533662 -109660002 - AluY SINE Alu -16 295 1 2085 97 0 4 chr1 172533662 172533940 -109659724 - AluSg SINE Alu -10 300 24 941 240 76 0 chr1 172534035 172534310 -109659354 - L1ME3A LINE L1 -28 6142 5847 310 266 14 58 chr1 172534608 172534747 -109658917 + L2 LINE L2 2911 3043 -229 476 296 93 12 chr1 172535089 172535261 -109658403 + MIR SINE MIR 21 206 -56 1526 142 112 4 chr1 172535560 172535828 -109657836 + AluJb SINE Alu 1 297 -15 836 191 13 0 chr1 172536463 172536615 -109657049 - MER5B DNA MER1_type 0 178 25 225 257 147 9 chr1 172539313 172539422 -109654242 - L2 LINE L2 -8 3305 3182 425 283 40 53 chr1 172539429 172539581 -109654083 + L2 LINE L2 3121 3270 -2 2132 79 50 0 chr1 172539760 172540039 -109653625 + AluSg SINE Alu 1 293 -17 693 264 142 80 chr1 172540115 172540450 -109653214 + MLT1L LTR MaLR 3 383 -232 2224 114 3 0 chr1 172540450 172540747 -109652917 - AluSx SINE Alu -14 298 1 693 264 142 80 chr1 172540747 172540934 -109652730 + MLT1L LTR MaLR 383 557 -58 329 340 98 0 chr1 172540944 172541097 -109652567 + MIR SINE MIR 47 214 -48 1636 153 33 18 chr1 172541408 172541683 -109651981 + AluJb SINE Alu 1 279 -33 219 266 0 16 chr1 172541713 172541777 -109651887 + L2 LINE L2 2583 2645 -669 491 244 119 38 chr1 172541795 172542042 -109651622 - MLT1L LTR MaLR -4 611 242 779 195 75 25 chr1 172542257 172542416 -109651248 - FRAM SINE Alu -2 174 8 1993 121 4 11 chr1 172542439 172542712 -109650952 + AluSx SINE Alu 1 271 -41 1063 94 114 0 chr1 172542767 172542916 -109650748 - AluSg SINE Alu -83 227 62 232 365 26 16 chr1 172542997 172543189 -109650475 - L2 LINE L2 -742 2572 2379 321 291 98 67 chr1 172543199 172543453 -109650211 - L2 LINE L2 -1367 1947 1686 248 208 271 0 chr1 172543605 172543701 -109649963 + MIR SINE MIR 64 185 -77 1885 151 39 0 chr1 172544029 172544314 -109649350 - AluSx SINE Alu -12 300 5 249 108 0 0 chr1 172544366 172544403 -109649261 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2365 118 123 28 chr1 172544584 172544932 -109648732 + MSTA LTR MaLR 1 391 -37 2325 109 0 3 chr1 172544932 172545234 -109648430 - AluSg SINE Alu -9 301 1 2365 118 123 28 chr1 172545234 172545276 -109648388 + MSTA LTR MaLR 391 428 0 10157 168 21 8 chr1 172545277 172546906 -109646758 + MSTA-int LTR MaLR 2 1651 0 2735 120 51 5 chr1 172546906 172547315 -109646349 + MSTA LTR MaLR 1 428 0 2333 101 0 0 chr1 172547339 172547637 -109646027 - AluSc SINE Alu -11 298 1 2371 108 0 3 chr1 172547891 172548205 -109645459 + AluSp SINE Alu 1 313 0 454 292 52 44 chr1 172548364 172548668 -109644996 + LTR16A LTR ERVL 86 445 -5 2889 281 91 26 chr1 172548671 172549574 -109644090 + HERV16 LTR ERVL 1 844 -4152 2239 96 7 16 chr1 172549574 172549877 -109643787 - AluSq SINE Alu -13 300 1 2889 281 91 26 chr1 172549877 172549954 -109643710 + HERV16 LTR ERVL 844 915 -4081 3763 120 47 32 chr1 172549954 172550556 -109643108 + LTR36 LTR ERV1 1 611 0 2889 281 91 26 chr1 172550556 172550677 -109642987 + HERV16 LTR ERVL 915 1174 -3822 906 122 0 23 chr1 172550678 172550809 -109642855 + FLAM_C SINE Alu 1 128 -15 386 285 161 0 chr1 172550939 172551076 -109642588 + HERV16 LTR ERVL 1238 1396 -3600 464 289 35 35 chr1 172551143 172551240 -109642424 + HERV16 LTR ERVL 1569 1668 -3328 180 0 0 0 chr1 172551240 172551260 -109642404 + (CAA)n Simple_repeat Simple_repeat 2 21 0 464 289 35 35 chr1 172551260 172551335 -109642329 + HERV16 LTR ERVL 1667 1741 -3255 3146 215 102 18 chr1 172551364 172551508 -109642156 - L1ME1 LINE L1 -3 6163 6033 902 221 34 24 chr1 172551508 172551716 -109641948 - MER63A DNA MER1_type 0 210 1 3146 215 102 18 chr1 172551716 172552371 -109641293 - L1ME1 LINE L1 -133 6033 5295 1707 174 7 0 chr1 172552371 172552658 -109641006 - AluJo SINE Alu -3 309 21 3146 215 102 18 chr1 172552658 172552696 -109640968 - L1ME1 LINE L1 -871 5295 5262 1450 216 43 34 chr1 172552729 172553173 -109640491 - L1M4 LINE L1 -822 5718 5271 3352 245 47 55 chr1 172553256 172554408 -109639256 - L1MDa LINE L1 -2084 4456 3297 374 217 0 0 chr1 172554408 172554486 -109639178 - FRAM/FAM SINE Alu -87 79 13 3352 245 47 55 chr1 172554486 172554595 -109639069 - L1MDa LINE L1 -3243 3297 3189 2071 105 14 14 chr1 172554595 172554890 -109638774 - AluSq SINE Alu -18 295 1 3352 245 47 55 chr1 172554890 172555411 -109638253 - L1MDa LINE L1 -3351 3189 2705 1926 146 3 3 chr1 172555415 172555702 -109637962 - AluSx SINE Alu -17 295 9 1090 145 12 0 chr1 172555709 172555875 -109637789 - AluSg/x SINE Alu -14 298 131 7081 189 103 60 chr1 172555875 172556162 -109637502 - L1MDa LINE L1 -3832 2708 2435 697 164 29 0 chr1 172556162 172556266 -109637398 - U6 snRNA snRNA 0 107 1 7081 189 103 60 chr1 172556266 172557003 -109636661 - L1MDa LINE L1 -4105 2435 1731 1499 141 45 141 chr1 172557003 172557337 -109636327 - AluJb SINE Alu 0 302 1 7081 189 103 60 chr1 172557337 172558421 -109635243 - L1MDa LINE L1 -4809 1731 510 1987 163 175 36 chr1 172558450 172558868 -109634796 - MLT2B1 LTR ERVL -10 510 35 1648 175 60 35 chr1 172558869 172559217 -109634447 - L1MDa LINE L1 -6180 360 4 282 140 0 0 chr1 172559201 172559251 -109634413 - L1MEc LINE L1 -5318 1078 1029 * 36 23 0 0 chr1 172559905 172559948 -109633716 + AT_rich Low_complexity Low_complexity 1 43 0 2093 118 0 56 chr1 172560102 172560424 -109633240 - AluSx SINE Alu -8 304 1 617 87 0 72 chr1 172560454 172560906 -109632758 + (TA)n Simple_repeat Simple_repeat 1 419 0 3901 206 38 14 chr1 172560906 172561811 -109631853 + L1ME1 LINE L1 5237 6161 -5 2172 115 10 22 chr1 172561836 172562150 -109631514 + AluSx SINE Alu 1 310 -2 2451 59 0 43 chr1 172565034 172565357 -109628307 + AluY SINE Alu 2 310 -1 508 309 55 5 chr1 172565380 172565581 -109628083 + MIR SINE MIR 2 212 -50 216 0 0 0 chr1 172565820 172565844 -109627820 + (T)n Simple_repeat Simple_repeat 1 24 0 1791 164 3 26 chr1 172565904 172566214 -109627450 + AluJb SINE Alu 1 303 -9 513 298 128 9 chr1 172567091 172567309 -109626355 + MIR SINE MIR 16 259 -3 462 205 45 0 chr1 172567647 172567759 -109625905 + L1MC4 LINE L1 7925 8041 -1 2564 199 49 52 chr1 172568351 172569329 -109624335 + L1ME2 LINE L1 5461 6155 -9 1730 149 7 7 chr1 172568928 172569210 -109624454 + AluJb SINE Alu 17 298 -14 449 247 24 36 chr1 172569210 172569339 -109624325 + L1MA10 LINE L1 6197 6327 -7 2553 64 0 3 chr1 172569339 172569651 -109624013 + AluY SINE Alu 1 311 0 2377 82 7 0 chr1 172570057 172570348 -109623316 + AluSq SINE Alu 3 295 -18 1653 155 53 11 chr1 172570536 172570820 -109622844 + AluJb SINE Alu 1 296 -16 2531 48 3 0 chr1 172571468 172571759 -109621905 - AluY SINE Alu -19 292 1 33 25 0 0 chr1 172572087 172572127 -109621537 + AT_rich Low_complexity Low_complexity 1 40 0 372 261 15 30 chr1 172572159 172572293 -109621371 + L1ME LINE L1 5545 5676 -445 363 130 0 0 chr1 172572383 172572437 -109621227 - Alu SINE Alu -3 297 244 1380 67 0 0 chr1 172572544 172572709 -109620955 + AluY SINE Alu 128 292 -19 301 214 71 0 chr1 172572911 172572995 -109620669 - L1MC4 LINE L1 -1339 6703 6614 288 273 0 20 chr1 172572979 172573069 -109620595 - L1MC4 LINE L1 -1339 6703 6614 * 733 126 0 0 chr1 172573069 172573172 -109620492 - U6 snRNA snRNA -4 103 1 4703 134 72 26 chr1 172573368 172574189 -109619475 + L1MC3 LINE L1 4989 5148 -998 2179 127 0 0 chr1 172574189 172574489 -109619175 + AluSx SINE Alu 1 300 -12 4703 134 72 26 chr1 172574489 172574758 -109618906 + L1MC3 LINE L1 5148 5403 -743 940 128 0 21 chr1 172574758 172574899 -109618765 + FLAM_C SINE Alu 1 138 -5 3339 182 61 10 chr1 172574909 172575597 -109618067 + L1MC3 LINE L1 6123 6845 -940 261 0 0 0 chr1 172575757 172575786 -109617878 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1627 91 5 14 chr1 172575786 172576006 -109617658 - AluSc SINE Alu -32 277 60 1205 171 0 133 chr1 172576338 172576684 -109616980 - AluJo SINE Alu -1 301 2 642 160 0 25 chr1 172576684 172576792 -109616872 - AluSc SINE Alu -13 296 190 941 129 14 0 chr1 172576792 172576931 -109616733 - AluSq/x SINE Alu -172 141 1 2278 120 3 0 chr1 172576953 172577261 -109616403 - AluSx SINE Alu -3 309 1 30 0 0 0 chr1 172577718 172577748 -109615916 + AT_rich Low_complexity Low_complexity 1 30 0 2193 129 0 0 chr1 172577754 172578049 -109615615 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr1 172578049 172578076 -109615588 + (TA)n Simple_repeat Simple_repeat 1 27 0 1850 150 0 14 chr1 172578220 172578528 -109615136 + AluJo SINE Alu 1 304 0 1498 202 10 55 chr1 172578786 172578924 -109614740 + AluJb SINE Alu 1 144 -158 1887 140 19 32 chr1 172578924 172579048 -109614616 + AluSx SINE Alu 1 125 -187 2217 88 11 0 chr1 172579048 172579332 -109614332 + AluY SINE Alu 3 289 -22 1887 140 19 32 chr1 172579332 172579522 -109614142 + AluSx SINE Alu 125 311 -1 1498 202 10 55 chr1 172579522 172579690 -109613974 + AluJb SINE Alu 144 293 -9 28 29 0 0 chr1 172580721 172580756 -109612908 + AT_rich Low_complexity Low_complexity 1 35 0 2203 104 0 10 chr1 172581496 172581793 -109611871 + AluSg SINE Alu 1 294 -16 202 279 0 0 chr1 172582590 172582633 -109611031 + L2 LINE L2 3136 3178 -94 299 271 23 83 chr1 172582754 172582887 -109610777 - MER112 DNA MER1_type 0 260 136 1327 148 0 5 chr1 172582887 172583083 -109610581 + AluJb SINE Alu 1 195 -117 1565 139 17 4 chr1 172583136 172583373 -109610291 - AluJb SINE Alu -15 297 58 1580 124 9 0 chr1 172583474 172583692 -109609972 + AluSg/x SINE Alu 78 297 -15 1188 143 0 0 chr1 172583810 172583978 -109609686 - AluSg/x SINE Alu -11 301 134 2235 120 0 0 chr1 172583978 172584287 -109609377 - AluSq SINE Alu -4 309 1 1238 140 126 59 chr1 172585194 172585465 -109608199 + AluJo SINE Alu 15 303 -9 233 299 60 68 chr1 172585592 172585709 -109607955 - L2 LINE L2 -4 3268 3153 2269 80 0 17 chr1 172585760 172586080 -109607584 + AluSp SINE Alu 1 315 0 201 275 40 67 chr1 172586418 172586567 -109607097 - MER5B DNA MER1_type -33 145 1 191 114 29 0 chr1 172587964 172587999 -109605665 + GA-rich Low_complexity Low_complexity 3 38 0 24 67 0 0 chr1 172588552 172588597 -109605067 + AT_rich Low_complexity Low_complexity 1 45 0 2198 70 11 0 chr1 172588745 172589017 -109604647 + AluSx SINE Alu 24 298 -14 25 0 0 0 chr1 172589386 172589411 -109604253 + AT_rich Low_complexity Low_complexity 1 25 0 210 271 0 0 chr1 172591027 172591097 -109602567 + (CCG)n Simple_repeat Simple_repeat 1 70 0 2506 82 0 0 chr1 172591874 172592177 -109601487 - AluSq SINE Alu -10 303 1 2165 161 0 3 chr1 172592179 172592563 -109601101 - L1 LINE L1 -817 5329 4947 2282 90 17 0 chr1 172592591 172592881 -109600783 + AluSq SINE Alu 1 295 -18 1118 268 122 75 chr1 172592896 172592999 -109600665 - L1MEc LINE L1 -5458 938 841 1006 194 0 0 chr1 172592999 172593164 -109600500 - FAM SINE Alu -9 166 2 1118 268 122 75 chr1 172593164 172593661 -109600003 - L1MEc LINE L1 -5555 841 282 2345 107 3 0 chr1 172593661 172593971 -109599693 - AluSp SINE Alu -2 311 1 1118 268 122 75 chr1 172593971 172594235 -109599429 - L1MEc LINE L1 -6114 282 32 4080 298 58 18 chr1 172594235 172596157 -109597507 + HERV16 LTR ERVL 1748 3469 -1527 1814 337 69 14 chr1 172596165 172597180 -109596484 + HERV16 LTR ERVL 3913 4983 -781 226 213 53 80 chr1 172597479 172597554 -109596110 - L1P3 LINE L1 -5320 1141 1069 1049 250 174 8 chr1 172597632 172598000 -109595664 + LTR16A LTR ERVL 16 444 -6 2580 71 0 10 chr1 172598513 172598824 -109594840 + AluSq SINE Alu 1 308 -5 219 69 0 0 chr1 172599220 172599249 -109594415 + (A)n Simple_repeat Simple_repeat 1 29 0 2326 99 3 16 chr1 172599603 172599917 -109593747 + AluSg SINE Alu 1 310 0 2423 98 3 0 chr1 172601027 172601334 -109592330 + AluSx SINE Alu 1 308 -4 813 188 0 0 chr1 172601357 172601490 -109592174 + FLAM_A SINE Alu 1 133 0 207 0 0 0 chr1 172601636 172601659 -109592005 + (A)n Simple_repeat Simple_repeat 1 23 0 1036 139 0 58 chr1 172602347 172602519 -109591145 + AluSq SINE Alu 1 162 -151 1226 218 142 23 chr1 172604883 172605314 -109588350 + L2 LINE L2 2054 2535 -779 1542 128 248 0 chr1 172605314 172605604 -109588060 + MER47A DNA MER2_type 1 362 -4 1350 225 85 42 chr1 172605608 172606358 -109587306 + L2 LINE L2 2534 3313 0 628 296 54 39 chr1 172606361 172606441 -109587223 + MER102b DNA MER1_type 1 78 -1350 2517 58 0 0 chr1 172606441 172606736 -109586928 - AluY SINE Alu -16 295 1 628 296 54 39 chr1 172606736 172606990 -109586674 + MER102b DNA MER1_type 78 340 -1 9715 41 7 145 chr1 172609398 172610932 -109582732 - SVA Other Other -8 1378 57 279 0 0 0 chr1 172610932 172610963 -109582701 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 1857 140 3 26 chr1 172612922 172613230 -109580434 - AluJb SINE Alu -11 301 1 216 329 37 12 chr1 172613581 172613663 -109580001 - MIR SINE MIR -106 102 19 849 138 0 0 chr1 172613752 172613868 -109579796 - AluSq SINE Alu -64 249 134 1925 128 79 3 chr1 172613868 172614158 -109579506 - AluSx SINE Alu 0 312 1 204 275 8 137 chr1 172618191 172618322 -109575342 - MIR SINE MIR -51 211 98 243 227 80 67 chr1 172619688 172619763 -109573901 + MIR SINE MIR 27 102 -106 2122 123 3 3 chr1 172619922 172620214 -109573450 + AluSx SINE Alu 1 292 -20 1032 184 16 11 chr1 172620478 172620663 -109573001 - AluJb SINE Alu -12 300 115 1205 188 3 43 chr1 172623326 172623630 -109570034 + AluY SINE Alu 1 292 -9 204 40 0 0 chr1 172623770 172623795 -109569869 + (CA)n Simple_repeat Simple_repeat 2 26 0 2090 96 57 0 chr1 172624598 172624878 -109568786 + AluSx SINE Alu 1 296 -16 1667 139 90 28 chr1 172624931 172625219 -109568445 + AluJb SINE Alu 1 306 -6 2638 218 209 23 chr1 172625820 172626453 -109567211 + L2 LINE L2 1657 2171 -1143 2148 114 10 7 chr1 172626453 172626751 -109566913 - AluJb SINE Alu -13 299 1 2638 218 209 23 chr1 172626751 172626992 -109566672 + L2 LINE L2 2171 2694 -620 210 256 212 22 chr1 172627045 172627182 -109566482 - MIR SINE MIR -13 249 87 345 176 122 0 chr1 172627767 172627841 -109565823 - Tigger7 DNA MER2_type 0 2587 2505 1273 173 95 0 chr1 172627848 172628091 -109565573 - Tigger7 DNA MER2_type -2220 267 2 2322 87 0 0 chr1 172628750 172629036 -109564628 - AluSg SINE Alu -24 286 1 1655 151 9 79 chr1 172629208 172629525 -109564139 + AluJo SINE Alu 1 295 -17 620 172 22 37 chr1 172629525 172629659 -109564005 - MER2 DNA MER2_type -213 132 1 243 316 140 9 chr1 172629809 172629923 -109563741 - L2 LINE L2 -3 3310 3182 309 379 8 8 chr1 172630057 172630189 -109563475 - MIR3 SINE MIR -4 204 73 523 206 175 0 chr1 172630569 172630695 -109562969 - FRAM SINE Alu -12 164 17 218 327 47 56 chr1 172633083 172633190 -109560474 + L2 LINE L2 3205 3310 -3 541 281 259 38 chr1 172633435 172633805 -109559859 - L1MC4a LINE L1 -1834 5974 5523 600 271 93 7 chr1 172633806 172634075 -109559589 - L1MC4a LINE L1 -2210 5598 5307 2316 101 7 0 chr1 172634130 172634428 -109559236 + AluSx SINE Alu 1 300 -12 639 122 0 0 chr1 172634526 172634616 -109559048 - AluS SINE Alu -221 91 2 2029 151 0 13 chr1 172634696 172635001 -109558663 - AluSx SINE Alu -11 301 1 361 287 58 35 chr1 172635281 172635455 -109558209 + MIR3 SINE MIR 23 200 -8 183 184 0 0 chr1 172636333 172636371 -109557293 + (CA)n Simple_repeat Simple_repeat 1 38 0 183 162 0 0 chr1 172638112 172638149 -109555515 + (CAG)n Simple_repeat Simple_repeat 3 39 0 594 291 99 31 chr1 172639225 172639465 -109554199 - MIR SINE MIR -5 257 6 553 188 169 56 chr1 172640825 172640919 -109552745 - MER5B DNA MER1_type 0 178 96 2396 138 0 0 chr1 172640919 172641281 -109552383 - MER47A DNA MER2_type -4 362 1 553 188 169 56 chr1 172641281 172641346 -109552318 - MER5B DNA MER1_type -82 96 1 200 383 148 27 chr1 172642383 172642532 -109551132 - L2 LINE L2 0 3272 3106 2048 100 0 4 chr1 172642647 172642917 -109550747 + AluSq SINE Alu 1 269 -44 285 316 18 26 chr1 172643019 172643133 -109550531 - L2 LINE L2 -225 3047 2935 323 250 67 48 chr1 172643554 172643658 -109550006 - L2 LINE L2 -18 3295 3190 947 265 165 44 chr1 172643714 172643930 -109549734 + L2 LINE L2 2505 2693 -620 2254 90 23 7 chr1 172643930 172644256 -109549408 - AluSx SINE Alu 0 312 1 947 265 165 44 chr1 172644256 172644765 -109548899 + L2 LINE L2 2693 3312 -1 325 317 126 52 chr1 172645122 172645431 -109548233 - L2 LINE L2 -14 3258 2927 211 268 0 0 chr1 172647884 172647925 -109545739 + polypurine Low_complexity Low_complexity 2 42 0 314 78 0 20 chr1 172647958 172648009 -109545655 + (CAG)n Simple_repeat Simple_repeat 3 52 0 1400 176 67 29 chr1 172654668 172655044 -109538620 - Charlie5 DNA MER1_type 0 2624 2235 472 205 41 8 chr1 172655048 172655170 -109538494 - MER3 DNA MER1_type -48 161 36 554 278 137 18 chr1 172655616 172655843 -109537821 - MIR SINE MIR -6 256 3 2263 100 3 3 chr1 172657791 172658080 -109535584 + AluSx SINE Alu 12 300 -12 2020 142 3 0 chr1 172658140 172658435 -109535229 + AluJb SINE Alu 1 296 -16 9682 29 8 170 chr1 172658786 172660319 -109533345 + SVA Other Other 102 1386 0 818 252 30 117 chr1 172660319 172660590 -109533074 + L1MEc LINE L1 1170 1463 -4933 1601 175 3 54 chr1 172660590 172660729 -109532935 + AluJo SINE Alu 1 119 -193 2026 163 0 0 chr1 172660729 172661036 -109532628 + AluSx SINE Alu 1 307 -5 1601 175 3 54 chr1 172661036 172661193 -109532471 + AluJo SINE Alu 119 282 -30 818 252 30 117 chr1 172661193 172661320 -109532344 + L1MEc LINE L1 1463 1599 -4797 1677 160 3 21 chr1 172661320 172661602 -109532062 - AluJo SINE Alu -19 293 17 818 252 30 117 chr1 172661602 172661657 -109532007 + L1MEc LINE L1 1599 1657 -4739 2408 97 3 0 chr1 172661657 172661965 -109531699 + AluSg SINE Alu 1 309 -1 818 252 30 117 chr1 172661965 172662198 -109531466 + L1MEc LINE L1 1657 1792 -4604 2239 102 3 0 chr1 172662198 172662504 -109531160 + AluSp SINE Alu 1 307 0 818 252 30 117 chr1 172662504 172662560 -109531104 + L1MEc LINE L1 1792 1851 -4545 2059 141 3 10 chr1 172662561 172662874 -109530790 + AluSx SINE Alu 2 312 0 490 172 9 226 chr1 172663109 172663330 -109530334 - LTR49-int LTR ERV1 -2884 3447 3275 516 145 51 94 chr1 172663390 172663467 -109530197 - LTR49-int LTR ERV1 -3059 3272 3202 2213 134 3 6 chr1 172663467 172663781 -109529883 + AluSq SINE Alu 1 313 0 516 145 51 94 chr1 172663781 172663841 -109529823 - LTR49-int LTR ERV1 -3129 3202 3141 449 221 103 7 chr1 172663861 172663997 -109529667 + L1MEc LINE L1 1849 1997 -4399 261 75 0 0 chr1 172664000 172664040 -109529624 + (TG)n Simple_repeat Simple_repeat 2 41 0 297 287 0 0 chr1 172664091 172664185 -109529479 + L1MEc LINE L1 2842 2935 -3280 324 155 52 26 chr1 172664211 172664327 -109529337 + (TA)n Simple_repeat Simple_repeat 1 119 0 925 228 88 61 chr1 172664342 172664932 -109528732 + L1MEc LINE L1 2009 2576 -3639 1330 280 58 39 chr1 172664966 172665634 -109528030 + L1ME LINE L1 42 722 -5348 717 196 42 81 chr1 172665641 172665830 -109527834 + L1MB7 LINE L1 4781 4976 -1170 2071 98 50 4 chr1 172665830 172666107 -109527557 + AluSx SINE Alu 14 303 -9 717 196 42 81 chr1 172666107 172666132 -109527532 + L1MB7 LINE L1 4976 5000 -1146 189 0 0 0 chr1 172666132 172666153 -109527511 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 717 196 42 81 chr1 172666153 172666197 -109527467 + L1MB7 LINE L1 5000 5030 -1116 * 2794 139 57 16 chr1 172666180 172666676 -109526988 + L1MB7 LINE L1 5541 6056 -128 579 163 0 0 chr1 172666843 172666935 -109526729 - AluSg/x SINE Alu -7 302 211 334 153 59 82 chr1 172666935 172666957 -109526707 + L1MB8 LINE L1 6091 6112 -66 2265 115 3 0 chr1 172666957 172667261 -109526403 + AluSp SINE Alu 1 305 -8 334 153 59 82 chr1 172667261 172667323 -109526341 + L1MB8 LINE L1 6112 6173 -5 2195 103 0 0 chr1 172667324 172667652 -109526012 + AluSg SINE Alu 1 328 0 2253 95 3 3 chr1 172667653 172667973 -109525691 + AluSp SINE Alu 1 320 0 1688 63 0 10 chr1 172667977 172668184 -109525480 + AluY SINE Alu 1 205 -106 1743 172 0 7 chr1 172718204 172718494 -109475170 - AluSx SINE Alu -24 288 1 2797 123 84 4 chr1 172718494 172718948 -109474716 + Tigger3(Golem) DNA MER2_type 2540 3029 0 230 333 29 0 chr1 172719181 172719250 -109474414 - L2 LINE L2 -44 3228 3158 641 244 161 76 chr1 172719724 172720079 -109473585 + MLT1J2 LTR MaLR 1 381 -69 985 66 50 0 chr1 172721004 172721125 -109472539 + AluSg/x SINE Alu 167 293 -17 1815 106 53 111 chr1 172721180 172721350 -109472314 + THE1C LTR MaLR 1 179 -196 2051 111 25 14 chr1 172721350 172721670 -109471994 + AluSx SINE Alu 1 323 0 1815 106 53 111 chr1 172721670 172721894 -109471770 + THE1C LTR MaLR 179 375 0 536 293 46 6 chr1 172722174 172722348 -109471316 + MIR SINE MIR 28 208 -54 2151 112 10 0 chr1 172722374 172722669 -109470995 - AluSg SINE Alu -12 298 1 417 285 67 44 chr1 172722726 172723284 -109470380 + HAL1b LINE L1 374 582 -749 1006 169 0 0 chr1 172723440 172723600 -109470064 + FRAM SINE Alu 8 167 -9 363 284 87 24 chr1 172724067 172724275 -109469389 + L1M4 LINE L1 2343 2563 -3583 1990 110 4 7 chr1 172724275 172724547 -109469117 - AluSg SINE Alu -18 292 22 195 289 0 0 chr1 172726635 172726687 -109466977 + L2 LINE L2 3220 3271 -1 234 180 131 16 chr1 172726714 172726775 -109466889 - L2 LINE L2 -4 3268 3201 486 276 92 0 chr1 172727060 172727223 -109466441 + MIR SINE MIR 37 214 -48 324 212 59 0 chr1 172727249 172727334 -109466330 - MLT1L LTR MaLR -31 584 495 202 261 0 0 chr1 172727344 172727376 -109466288 + CT-rich Low_complexity Low_complexity 2 36 -11 800 71 0 0 chr1 172727376 172727475 -109466189 - HY3 scRNA scRNA -2 99 1 202 261 0 0 chr1 172727475 172727488 -109466176 + CT-rich Low_complexity Low_complexity 35 47 0 2318 115 0 6 chr1 172728105 172728418 -109465246 - AluSx SINE Alu -1 311 1 2597 192 53 43 chr1 172728443 172728904 -109464760 + L1MC4 LINE L1 7114 7584 -458 1841 169 0 16 chr1 172728904 172729211 -109464453 + AluJo SINE Alu 10 311 -1 2597 192 53 43 chr1 172729211 172729374 -109464290 + L1MC4 LINE L1 7584 7744 -298 1706 77 0 43 chr1 172729413 172729646 -109464018 - AluSg/x SINE Alu -5 307 85 841 238 213 40 chr1 172729647 172729975 -109463689 + MLT1J1 LTR MaLR 60 444 -2 202 350 96 10 chr1 172730020 172730217 -109463447 + L2 LINE L2 298 511 -2803 206 314 36 44 chr1 172730454 172730591 -109463073 + L2 LINE L2 1334 1469 -1845 251 327 93 6 chr1 172730747 172730909 -109462755 + L2 LINE L2 1767 1942 -1372 915 107 23 8 chr1 172730941 172731072 -109462592 - FLAM_C SINE Alu -10 133 1 256 329 0 12 chr1 172731250 172731335 -109462329 + CT-rich Low_complexity Low_complexity 4 87 0 2322 66 0 72 chr1 172731367 172731687 -109461977 - AluSp SINE Alu -16 297 1 244 302 68 107 chr1 172732267 172732651 -109461013 + L2 LINE L2 2889 3257 -15 490 36 64 36 chr1 172732834 172732974 -109460690 + (CAGG)n Simple_repeat Simple_repeat 1 144 0 2172 106 10 10 chr1 172734574 172734876 -109458788 + AluSx SINE Alu 1 302 -10 269 317 0 0 chr1 172735135 172735217 -109458447 + MIR SINE MIR 52 133 -129 293 338 27 14 chr1 172736040 172736188 -109457476 + MIR3 SINE MIR 4 153 -55 259 301 91 21 chr1 172736268 172736411 -109457253 - MIR SINE MIR -90 172 20 199 147 0 0 chr1 172738417 172738451 -109455213 - MIR SINE MIR -111 151 118 2519 58 3 10 chr1 172739685 172739998 -109453666 + AluY SINE Alu 1 311 0 2285 128 48 35 chr1 172740403 172740430 -109453234 + MER65A LTR ERV1 1 26 -419 2447 70 0 7 chr1 172740430 172740731 -109452933 + AluSc SINE Alu 1 299 -10 2285 128 48 35 chr1 172740731 172741102 -109452562 + MER65A LTR ERV1 26 404 -41 1459 177 33 50 chr1 172741111 172741410 -109452254 - AluJo SINE Alu -8 294 1 333 163 0 35 chr1 172741434 172741520 -109452144 + CT-rich Low_complexity Low_complexity 2 84 0 297 45 0 45 chr1 172743213 172743257 -109450407 + MER65A LTR ERV1 404 445 0 9145 182 56 71 chr1 172743258 172743426 -109450238 + MER65A-int LTR ERV1 6 175 -5160 2144 107 30 3 chr1 172743426 172743726 -109449938 - AluSc SINE Alu -1 308 1 9145 182 56 71 chr1 172743726 172744338 -109449326 + MER65A-int LTR ERV1 175 795 -4540 2196 112 0 3 chr1 172744338 172744632 -109449032 - AluSg SINE Alu -17 293 1 9145 182 56 71 chr1 172744632 172745514 -109448150 + MER65A-int LTR ERV1 795 1689 -3646 4200 58 60 76 chr1 172745514 172746134 -109447530 - LTR66 LTR ERVL 0 610 1 9145 182 56 71 chr1 172746134 172747027 -109446637 + MER65A-int LTR ERV1 1689 2877 -2458 2039 139 0 3 chr1 172747027 172747322 -109446342 - AluJb SINE Alu -18 294 1 9145 182 56 71 chr1 172747322 172747403 -109446261 + MER65A-int LTR ERV1 2877 2958 -2377 7380 188 86 88 chr1 172747375 172747501 -109446163 + MER65A-int LTR ERV1 1551 1676 -3195 * 1731 190 10 6 chr1 172747501 172747812 -109445852 + AluJo SINE Alu 1 312 0 7380 188 86 88 chr1 172747812 172748303 -109445361 + MER65A-int LTR ERV1 1676 2166 -2705 2181 143 0 0 chr1 172748303 172748597 -109445067 - AluSx SINE Alu -18 294 1 7380 188 86 88 chr1 172748597 172750091 -109443573 + MER65A-int LTR ERV1 2166 3661 -1210 2342 97 0 3 chr1 172750091 172750389 -109443275 - AluSq SINE Alu -16 297 1 7380 188 86 88 chr1 172750389 172751840 -109441824 + MER65A-int LTR ERV1 3661 4587 -284 1932 116 19 61 chr1 172751840 172752012 -109441652 - AluSx SINE Alu -15 297 142 2473 74 0 0 chr1 172752012 172752323 -109441341 - AluY SINE Alu 0 311 1 1932 116 19 61 chr1 172752323 172752460 -109441204 - AluSx SINE Alu -170 142 1 7380 188 86 88 chr1 172752460 172752745 -109440919 + MER65A-int LTR ERV1 4587 4871 0 1872 137 173 26 chr1 172752745 172753133 -109440531 + MER65A LTR ERV1 1 445 0 487 206 50 81 chr1 172753456 172753616 -109440048 + MER5B DNA MER1_type 22 176 -2 577 259 18 6 chr1 172753639 172753805 -109439859 + MIR3 SINE MIR 30 197 -11 1935 245 83 32 chr1 172754071 172754570 -109439094 - MLT1E2 LTR MaLR 0 626 91 2383 85 3 0 chr1 172754570 172754865 -109438799 - AluSx SINE Alu -16 296 1 1935 245 83 32 chr1 172754865 172754957 -109438707 - MLT1E2 LTR MaLR -535 91 5 249 208 0 0 chr1 172755524 172755572 -109438092 - L2 LINE L2 0 3313 3266 373 261 58 29 chr1 172756096 172756234 -109437430 + MIR3 SINE MIR 4 145 -63 321 198 0 0 chr1 172756290 172756386 -109437278 + (TA)n Simple_repeat Simple_repeat 1 96 0 257 167 0 0 chr1 172756386 172756428 -109437236 - AluJo SINE Alu -10 292 251 1006 153 6 18 chr1 172756441 172756611 -109437053 - AluJo SINE Alu -144 168 1 424 325 94 29 chr1 172756646 172757027 -109436637 - LTR67 LTR ERVL -50 507 102 1775 149 7 4 chr1 172757648 172757929 -109435735 + THE1A LTR MaLR 3 284 -71 458 339 27 9 chr1 172758058 172758279 -109435385 - ERVL LTR ERVL -341 5423 5199 27 29 0 0 chr1 172758291 172758325 -109435339 + AT_rich Low_complexity Low_complexity 1 34 0 189 0 0 0 chr1 172758535 172758556 -109435108 + (TC)n Simple_repeat Simple_repeat 2 22 0 231 88 0 0 chr1 172758562 172758596 -109435068 + (CA)n Simple_repeat Simple_repeat 2 35 0 498 339 66 0 chr1 172758618 172758889 -109434775 - ERVL LTR ERVL -520 5173 4842 1150 313 47 13 chr1 172758906 172759354 -109434310 - ERVL LTR ERVL -1639 4125 3663 649 327 48 8 chr1 172759423 172759671 -109433993 - ERVL LTR ERVL -2123 3641 3384 1048 287 12 21 chr1 172760149 172760487 -109433177 - ERVL LTR ERVL -2341 3313 2979 1011 249 97 105 chr1 172760496 172761080 -109432584 + LTR41 LTR ERVL 1 579 -194 4300 167 57 41 chr1 172761080 172761929 -109431735 + MER21B LTR ERV1 1 862 -1 1011 249 97 105 chr1 172761929 172762107 -109431557 + LTR41 LTR ERVL 579 757 -16 599 199 71 30 chr1 172762206 172762472 -109431192 + L1MC5 LINE L1 7655 7931 -30 345 339 9 0 chr1 172762552 172762661 -109431003 - ERVL LTR ERVL -3608 2046 1937 47 33 0 0 chr1 172763572 172763633 -109430031 + AT_rich Low_complexity Low_complexity 1 61 0 534 265 13 97 chr1 172763848 172764086 -109429578 - LTR67 LTR ERVL -321 236 19 2105 99 46 0 chr1 172764372 172764656 -109429008 + AluSg SINE Alu 1 297 -13 253 412 111 0 chr1 172765202 172765355 -109428309 - L2 LINE L2 -1 3271 3102 1954 136 0 0 chr1 172765838 172766118 -109427546 - AluJo SINE Alu -11 301 22 283 29 0 0 chr1 172766121 172766156 -109427508 + L1PA8A LINE L1 5751 5785 -346 501 322 79 37 chr1 172766358 172766790 -109426874 - L2 LINE L2 -19 3253 2804 2660 20 0 7 chr1 172766825 172767118 -109426546 + AluY SINE Alu 1 291 -20 269 322 159 34 chr1 172767120 172767673 -109425991 - L2 LINE L2 -1227 2087 1466 388 250 52 9 chr1 172767674 172767790 -109425874 - MIR SINE MIR -61 201 81 21 0 0 0 chr1 172768139 172768160 -109425504 + AT_rich Low_complexity Low_complexity 1 21 0 756 229 117 26 chr1 172768168 172768399 -109425265 - MIR SINE MIR -5 257 6 710 272 42 9 chr1 172768501 172768718 -109424946 + MIR SINE MIR 15 238 -24 544 122 0 0 chr1 172768957 172769039 -109424625 - AluJ/FRAM SINE Alu -11 301 220 298 170 38 0 chr1 172769039 172769092 -109424572 - FRAM SINE Alu -59 107 53 1206 111 0 12 chr1 172769872 172770043 -109423621 - AluSg/x SINE Alu -12 300 132 558 175 26 0 chr1 172770725 172770839 -109422825 + MIR SINE MIR 129 245 -17 302 67 217 0 chr1 172771023 172771083 -109422581 + MER41A LTR ERV1 401 473 -81 332 102 0 34 chr1 172771099 172771158 -109422506 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 483 280 108 5 chr1 172771169 172771355 -109422309 + MIR SINE MIR 45 249 -13 24 0 0 0 chr1 172771369 172771393 -109422271 + AT_rich Low_complexity Low_complexity 1 24 0 396 123 0 0 chr1 172771579 172771652 -109422012 + (TC)n Simple_repeat Simple_repeat 2 74 0 1006 270 61 42 chr1 172771722 172772129 -109421535 - L1ME4a LINE L1 -215 5906 5492 2256 45 45 0 chr1 172772139 172772406 -109421258 - AluY SINE Alu -32 279 1 201 236 83 90 chr1 172772409 172772553 -109421111 + L2 LINE L2 3171 3313 0 283 268 41 21 chr1 172773739 172773836 -109419828 + LTR67 LTR ERVL 101 199 -358 2506 70 0 3 chr1 172774360 172774659 -109419005 + AluY SINE Alu 1 298 -13 211 340 30 10 chr1 172776272 172776372 -109417292 + MIR3 SINE MIR 77 178 -30 462 203 203 14 chr1 172777246 172777389 -109416275 - MIR3 SINE MIR -10 198 29 254 241 139 51 chr1 172778279 172778416 -109415248 - LTR11 LTR ERV -196 488 340 2120 130 63 26 chr1 172778794 172779224 -109414440 - L1MA8 LINE L1 -1 6290 5845 1798 85 140 15 chr1 172779503 172779775 -109413889 - AluSg SINE Alu -4 306 1 2354 58 41 3 chr1 172780011 172780303 -109413361 - AluY SINE Alu -8 303 1 21 0 0 0 chr1 172780788 172780809 -109412855 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 172782076 172782097 -109411567 + AT_rich Low_complexity Low_complexity 1 21 0 225 94 0 0 chr1 172784439 172784471 -109409193 + (CA)n Simple_repeat Simple_repeat 1 32 0 26 30 0 0 chr1 172787303 172787336 -109406328 + GC_rich Low_complexity Low_complexity 1 33 0 228 223 0 64 chr1 172787677 172787771 -109405893 + C-rich Low_complexity Low_complexity 3 90 0 2380 76 36 0 chr1 172788301 172788602 -109405062 + AluSx SINE Alu 1 312 0 3824 116 51 68 chr1 172789631 172790356 -109403308 + Tigger3b DNA MER2_type 1 713 -518 979 100 36 0 chr1 172790357 172790497 -109403167 + AluSc SINE Alu 1 145 -164 2233 76 47 27 chr1 172790617 172790918 -109402746 - AluSq SINE Alu -6 307 1 321 111 0 0 chr1 172791302 172791347 -109402317 + Alu SINE Alu 7 51 -249 248 161 0 71 chr1 172791318 172791374 -109402290 + Alu SINE Alu 244 295 -7 * 2110 120 20 0 chr1 172791605 172791905 -109401759 - AluSq SINE Alu -7 306 1 3005 92 114 101 chr1 172792029 172792616 -109401048 + LTR61 LTR ERV1 1 595 0 2286 97 3 0 chr1 172792892 172793180 -109400484 + AluSp SINE Alu 1 289 -24 2137 119 0 10 chr1 172793198 172793500 -109400164 + AluJo SINE Alu 1 299 -13 343 226 81 8 chr1 172793645 172793769 -109399895 - HAL1 LINE L1 -335 2172 2040 768 258 19 33 chr1 172794584 172794797 -109398867 + MER63A DNA MER1_type 1 210 0 633 220 96 23 chr1 172795513 172795690 -109397974 - Charlie8 DNA MER1_type -2215 202 13 329 280 6 0 chr1 172797898 172798055 -109395609 + (CA)n Simple_repeat Simple_repeat 1 158 0 858 85 0 47 chr1 172798282 172798411 -109395253 + AluJo SINE Alu 12 134 -178 22 56 0 0 chr1 172798450 172798486 -109395178 + AT_rich Low_complexity Low_complexity 1 36 0 217 326 61 0 chr1 172798719 172798817 -109394847 - MIR3 SINE MIR -27 181 78 296 262 93 9 chr1 172798883 172798990 -109394674 - MLT1K LTR MaLR -326 262 147 1670 165 0 4 chr1 172799784 172800045 -109393619 - AluJo SINE Alu -11 301 42 326 219 0 0 chr1 172800309 172800373 -109393291 + MIR SINE MIR 116 179 -83 234 262 206 8 chr1 172800373 172800499 -109393165 + MIR SINE MIR 86 236 -26 321 130 0 0 chr1 172801707 172801753 -109391911 - FLAM SINE Alu -29 104 59 988 121 0 0 chr1 172801754 172801886 -109391778 + AluJb SINE Alu 156 287 -25 240 35 0 0 chr1 172801887 172801916 -109391748 + (CATA)n Simple_repeat Simple_repeat 2 30 0 2561 46 0 10 chr1 172802253 172802558 -109391106 - AluY SINE Alu -9 302 1 473 165 25 91 chr1 172802627 172802721 -109390943 - Charlie7 DNA MER1_type -2070 542 456 2267 106 3 0 chr1 172802721 172803014 -109390650 - AluSx SINE Alu -18 294 1 473 165 25 91 chr1 172803014 172803040 -109390624 - Charlie7 DNA MER1_type -2156 456 430 473 139 0 0 chr1 172803047 172803133 -109390531 - L1MB8 LINE L1 0 6178 6093 3457 152 61 2 chr1 172803150 172803775 -109389889 - L1MB4 LINE L1 -7 6173 5512 231 167 0 0 chr1 172803775 172803817 -109389847 + CT-rich Low_complexity Low_complexity 1 42 0 1900 174 0 16 chr1 172803817 172804128 -109389536 - AluJo SINE Alu -6 306 1 3438 175 82 65 chr1 172804129 172804309 -109389355 - L1MB5 LINE L1 -38 6136 5961 2268 131 21 16 chr1 172804309 172804682 -109388982 - THE1C LTR MaLR 0 375 1 3438 175 82 65 chr1 172804682 172805154 -109388510 - L1MB5 LINE L1 -213 5961 5459 1578 101 0 19 chr1 172805154 172805387 -109388277 + AluSq SINE Alu 82 310 0 3438 175 82 65 chr1 172805387 172805690 -109387974 - L1MB5 LINE L1 -715 5459 5163 2598 60 0 0 chr1 172805695 172805994 -109387670 - AluY SINE Alu -12 299 1 2564 208 30 24 chr1 172806001 172806636 -109387028 - L1MB5 LINE L1 -1840 4306 3668 2142 151 0 0 chr1 172807269 172807581 -109386083 + AluJb SINE Alu 1 312 0 394 179 26 0 chr1 172808561 172808639 -109385025 + MER116 DNA Mariner 1 80 0 3854 186 39 57 chr1 172808735 172809722 -109383942 + LTR5 LTR ERVK 1 969 0 1821 189 71 71 chr1 172809758 172810223 -109383441 + MLT1C LTR MaLR 3 467 0 1935 139 4 4 chr1 172810592 172810901 -109382763 - AluSx SINE Alu 0 309 1 1353 243 96 35 chr1 172811597 172812327 -109381337 + L1ME3 LINE L1 5087 5860 -302 411 201 40 168 chr1 172812435 172812676 -109380988 - L1ME LINE L1 -302 5819 5620 2040 119 0 3 chr1 172812676 172812961 -109380703 - AluJo SINE Alu -14 298 15 411 201 40 168 chr1 172812961 172813020 -109380644 - L1ME LINE L1 -501 5620 5555 213 39 0 0 chr1 172813146 172813172 -109380492 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1101 147 37 31 chr1 172813844 172814035 -109379629 + MER3 DNA MER1_type 1 192 -17 247 283 0 0 chr1 172814448 172814501 -109379163 + MLT1K LTR MaLR 73 125 -463 855 267 170 24 chr1 172814527 172814868 -109378796 + MLT1K LTR MaLR 196 586 -2 27 29 0 0 chr1 172815072 172815106 -109378558 + AT_rich Low_complexity Low_complexity 1 34 0 342 0 0 0 chr1 172815118 172815156 -109378508 + (CA)n Simple_repeat Simple_repeat 2 39 0 378 265 133 19 chr1 172815167 172815431 -109378233 + L1M4 LINE L1 3187 3480 -2666 2386 103 0 3 chr1 172815872 172816182 -109377482 - AluSg SINE Alu -1 309 1 890 154 0 0 chr1 172816204 172816340 -109377324 - FAM SINE Alu -12 173 38 2312 99 0 0 chr1 172816442 172816759 -109376905 + AluSx SINE Alu 5 321 0 306 202 43 136 chr1 172817202 172817324 -109376340 - L1MEd LINE L1 -5077 1042 910 2452 104 0 0 chr1 172817324 172817632 -109376032 - AluSg SINE Alu -2 308 1 306 202 43 136 chr1 172817632 172817729 -109375935 - L1MEd LINE L1 -5209 910 806 459 0 0 0 chr1 172817729 172817780 -109375884 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2148 118 0 0 chr1 172817784 172818064 -109375600 - AluSx SINE Alu -32 280 1 306 202 43 136 chr1 172818064 172818214 -109375450 - L1MEd LINE L1 -5316 803 705 24 32 0 0 chr1 172818606 172818637 -109375027 + AT_rich Low_complexity Low_complexity 1 31 0 208 381 24 12 chr1 172818772 172818856 -109374808 + MIR SINE MIR 23 107 -101 32 0 0 0 chr1 172819156 172819188 -109374476 + AT_rich Low_complexity Low_complexity 1 32 0 231 250 0 0 chr1 172819262 172819322 -109374342 + L1M4 LINE L1 4545 4604 -1542 2802 184 14 5 chr1 172819377 172819792 -109373872 + L1 LINE L1 3965 4388 -1758 1950 168 0 3 chr1 172819792 172820102 -109373562 + AluSx SINE Alu 1 309 -3 2802 184 14 5 chr1 172820102 172820251 -109373413 + L1 LINE L1 4388 4534 -1612 785 188 113 0 chr1 172820280 172820440 -109373224 - AluJo SINE Alu -6 306 129 721 267 136 57 chr1 172820459 172820879 -109372785 + LTR16A1 LTR ERVL 1 453 -4 1068 176 0 0 chr1 172821323 172821488 -109372176 + FRAM SINE Alu 1 161 -15 400 232 89 70 chr1 172821490 172821749 -109371915 - L1ME4a LINE L1 -23 6098 5835 230 279 88 0 chr1 172822174 172822242 -109371422 - L2 LINE L2 -76 3196 3123 2428 66 13 0 chr1 172822547 172822850 -109370814 - AluSp SINE Alu -6 307 1 216 239 120 33 chr1 172823247 172823339 -109370325 + L2 LINE L2 3210 3309 -4 359 309 41 0 chr1 172823461 172823558 -109370106 + MIR3 SINE MIR 106 206 -2 322 284 211 0 chr1 172823753 172823862 -109369802 + MER5A DNA MER1_type 51 182 -7 244 336 90 8 chr1 172823870 172823992 -109369672 - L2 LINE L2 -543 2771 2640 540 297 83 70 chr1 172824040 172824604 -109369060 - L2 LINE L2 -2123 1191 527 612 181 129 0 chr1 172824604 172824720 -109368944 - AluJo SINE Alu -171 131 1 540 297 83 70 chr1 172824720 172824783 -109368881 - L2 LINE L2 -2787 527 466 215 307 174 24 chr1 172824895 172825107 -109368557 - L2 LINE L2 -1243 2071 1828 490 195 11 0 chr1 172825308 172825395 -109368269 - MIR SINE MIR -130 132 45 1756 242 299 8 chr1 172825412 172825734 -109367930 - L2 LINE L2 -1074 2240 2013 2115 142 0 3 chr1 172825734 172826045 -109367619 + AluSx SINE Alu 1 310 -2 1756 242 299 8 chr1 172826045 172826494 -109367170 - L2 LINE L2 -1301 2013 1244 2105 118 6 32 chr1 172826494 172826808 -109366856 - AluSx SINE Alu -6 306 1 1421 172 34 8 chr1 172826917 172827185 -109366479 + L1MC2 LINE L1 6058 6332 -12 439 291 103 23 chr1 172827248 172827423 -109366241 - L2 LINE L2 -3119 195 7 551 241 92 14 chr1 172827957 172828098 -109365566 - MIR3 SINE MIR -21 187 36 2811 124 14 54 chr1 172828349 172828634 -109365030 + MSTA LTR MaLR 3 265 -163 2368 95 0 3 chr1 172828634 172828939 -109364725 - AluSx SINE Alu -8 304 1 2811 124 14 54 chr1 172828939 172829097 -109364567 + MSTA LTR MaLR 265 428 0 388 190 0 25 chr1 172829131 172829210 -109364454 - MIR SINE MIR -80 182 106 256 330 0 37 chr1 172829359 172829468 -109364196 - L2 LINE L2 -642 2672 2568 1252 88 6 18 chr1 172830025 172830196 -109363468 + MLT2A1 LTR ERVL 193 361 -83 8207 152 72 11 chr1 172830276 172831856 -109361808 + L1PB1 LINE L1 59 1542 -5320 2278 86 28 3 chr1 172831856 172832147 -109361517 + AluSc SINE Alu 1 298 -11 8207 152 72 11 chr1 172832147 172833406 -109360258 + L1PB1 LINE L1 1542 2723 -4139 3704 109 16 6 chr1 172833406 172833912 -109359752 + MER9 LTR ERVK 1 511 0 8207 152 72 11 chr1 172833912 172834206 -109359458 + L1PB1 LINE L1 2723 2998 -3864 2326 109 0 0 chr1 172834206 172834519 -109359145 + AluSq SINE Alu 1 313 0 8207 152 72 11 chr1 172834519 172834715 -109358949 + L1PB1 LINE L1 2998 3774 -3088 1257 134 279 5 chr1 172834709 172834975 -109358689 + L1PB1 LINE L1 6144 6478 -397 * 2154 126 0 13 chr1 172834985 172835303 -109358361 + L1PB1 LINE L1 6551 6864 -3 1918 149 7 3 chr1 172835357 172835653 -109358011 + AluSx SINE Alu 6 302 -10 21 0 0 0 chr1 172835780 172835801 -109357863 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 172835915 172835937 -109357727 + AT_rich Low_complexity Low_complexity 1 22 0 341 299 94 20 chr1 172835993 172836237 -109357427 - L1ME4a LINE L1 -220 5901 5640 203 292 101 11 chr1 172836542 172836631 -109357033 - L2 LINE L2 -8 3264 3168 30 59 0 0 chr1 172836983 172837034 -109356630 + AT_rich Low_complexity Low_complexity 1 51 0 320 335 112 26 chr1 172837158 172837471 -109356193 - L2 LINE L2 -556 2758 2419 1051 168 153 21 chr1 172837769 172838053 -109355611 + MER61B LTR ERV1 1 419 -6 228 150 50 0 chr1 172838052 172838092 -109355572 - Alu SINE Alu -9 291 250 * 659 240 92 92 chr1 172838124 172838482 -109355182 + LTR4 LTR ERV1 1 358 -238 4587 109 94 106 chr1 172838599 172840029 -109353635 + pTR5 LTR ERV1 79 2435 -3 1000 163 19 91 chr1 172840038 172840302 -109353362 + LTR4 LTR ERV1 352 596 0 2862 135 59 17 chr1 172840600 172841478 -109352186 + LTR4-int LTR ERV1 247 1272 -3945 1946 95 7 4 chr1 172841484 172841758 -109351906 + LTR4-int LTR ERV1 1393 1667 -3550 637 220 170 5 chr1 172842778 172842996 -109350668 - MER63 DNA MER1_type -129 933 680 308 216 80 34 chr1 172843081 172843169 -109350495 + Alu SINE Alu 209 300 -1 2142 97 21 7 chr1 172843855 172844144 -109349520 - AluSx SINE Alu -18 294 2 460 207 22 101 chr1 172844506 172844546 -109349118 - L1MA10 LINE L1 -1 6333 6291 2332 88 0 20 chr1 172844546 172844679 -109348985 + AluSq SINE Alu 5 139 -174 2460 73 0 0 chr1 172844679 172844981 -109348683 + AluY SINE Alu 1 302 -9 2332 88 0 20 chr1 172844981 172845152 -109348512 + AluSq SINE Alu 139 303 -10 2438 95 0 0 chr1 172845152 172845456 -109348208 + AluSg SINE Alu 1 304 -6 460 207 22 101 chr1 172845456 172845482 -109348182 - L1MA10 LINE L1 -41 6293 5358 3208 201 76 24 chr1 172845482 172846275 -109347389 - L1ME1 LINE L1 -44 6122 5289 387 270 58 22 chr1 172846459 172846596 -109347068 - Charlie2 DNA MER1_type -2511 271 130 539 328 11 0 chr1 172846778 172846961 -109346703 + L2 LINE L2 2869 3053 -219 255 267 0 0 chr1 172846965 172847025 -109346639 - MIR SINE MIR -21 241 182 194 216 20 0 chr1 172847178 172847229 -109346435 + L2 LINE L2 3262 3313 0 358 256 33 0 chr1 172847254 172847375 -109346289 + L2 LINE L2 2142 2266 -1048 302 239 42 0 chr1 172847373 172847444 -109346220 - MIR SINE MIR -71 191 118 * 25 0 0 0 chr1 172847569 172847594 -109346070 + AT_rich Low_complexity Low_complexity 1 25 0 262 322 70 79 chr1 172848047 172848558 -109345106 - L2 LINE L2 -231 3041 2523 191 264 153 81 chr1 172848673 172848934 -109344730 - L2 LINE L2 -1365 1949 1670 2229 235 37 41 chr1 172848939 172849370 -109344294 + MER57-int LTR ERV1 3539 3970 -901 1637 176 3 21 chr1 172849370 172849690 -109343974 + AluJb SINE Alu 3 317 0 2229 235 37 41 chr1 172849690 172849824 -109343840 + MER57-int LTR ERV1 3970 4103 -768 2223 197 43 53 chr1 172849858 172850155 -109343509 + MER57-int LTR ERV1 6637 6928 -609 2276 99 3 0 chr1 172850155 172850447 -109343217 + AluSx SINE Alu 1 293 -19 2223 197 43 53 chr1 172850447 172850662 -109343002 + MER57-int LTR ERV1 6928 7144 -393 2817 137 54 30 chr1 172850662 172851160 -109342504 + LTR54 LTR ERV1 1 510 0 192 77 0 0 chr1 172851309 172851335 -109342329 + (A)n Simple_repeat Simple_repeat 1 26 0 241 333 58 32 chr1 172851406 172851562 -109342102 + L2 LINE L2 1913 2072 -1242 616 257 36 54 chr1 172851729 172851951 -109341713 - MER21B LTR ERV1 -99 764 547 3051 142 90 8 chr1 172851967 172852125 -109341539 + LTR51 LTR ERV1 1 145 -526 2230 115 0 3 chr1 172852125 172852420 -109341244 + AluSq SINE Alu 1 294 -19 3051 142 90 8 chr1 172852420 172852789 -109340875 + LTR51 LTR ERV1 145 572 -99 2613 118 33 0 chr1 172852789 172853179 -109340485 + MER57A LTR ERV1 1 403 0 585 156 31 0 chr1 172853208 172853304 -109340360 + LTR51 LTR ERV1 573 671 0 588 197 60 119 chr1 172853328 172853546 -109340118 - MER21B LTR ERV1 -333 530 326 2178 144 144 24 chr1 172853547 172853701 -109339963 - LTR39 LTR ERV1 0 783 649 2015 81 7 0 chr1 172853701 172853973 -109339691 - AluY SINE Alu -1 310 37 2178 144 144 24 chr1 172853973 172854206 -109339458 - LTR39 LTR ERV1 -134 649 339 3671 122 82 26 chr1 172854206 172854650 -109339014 + MER51D LTR ERV1 1 491 -166 2101 115 0 33 chr1 172854650 172854954 -109338710 + AluSx SINE Alu 1 294 -18 3671 122 82 26 chr1 172854954 172855131 -109338533 + MER51D LTR ERV1 491 657 0 2178 144 144 24 chr1 172855131 172855165 -109338499 - LTR39 LTR ERV1 -444 339 310 3958 143 16 69 chr1 172855165 172855894 -109337770 - LTR8 LTR ERV1 0 691 1 244 65 0 0 chr1 172855906 172855937 -109337727 - LTR39 LTR ERV1 -165 618 588 1526 211 23 16 chr1 172855945 172856248 -109337416 - HUERS-P1 LTR ERV1 -13 6250 5946 1283 181 151 36 chr1 172856329 172856660 -109337004 - LTR49-int LTR ERV1 -58 6273 5905 1701 152 25 53 chr1 172856671 172856852 -109336812 - LTR49-int LTR ERV1 -541 5790 5622 2346 93 0 0 chr1 172856852 172857153 -109336511 - AluSc SINE Alu -8 301 1 1701 152 25 53 chr1 172857153 172857326 -109336338 - LTR49-int LTR ERV1 -709 5622 5446 371 214 222 0 chr1 172857400 172857517 -109336147 - MER46C DNA MER2_type -111 227 85 373 250 133 8 chr1 172857721 172857849 -109335815 - MIR SINE MIR -16 246 103 260 217 130 0 chr1 172858387 172858456 -109335208 + MER46C DNA MER2_type 114 191 -147 3471 143 40 89 chr1 172858456 172858609 -109335055 - LTR49-int LTR ERV1 -559 5704 5545 2576 57 0 22 chr1 172858609 172858926 -109334738 - AluY SINE Alu -1 310 1 3471 143 40 89 chr1 172858926 172859537 -109334127 - LTR49-int LTR ERV1 -718 5545 4977 * 8361 109 48 44 chr1 172859531 172859975 -109333689 + MER4B-int LTR ERV1 1387 1828 -4653 1939 119 20 53 chr1 172859975 172860278 -109333386 - AluSx SINE Alu -19 293 1 8361 109 48 44 chr1 172860278 172861236 -109332428 + MER4B-int LTR ERV1 1828 2781 -3700 2422 68 10 0 chr1 172861236 172861532 -109332132 - AluY SINE Alu -12 299 1 8361 109 48 44 chr1 172861532 172862084 -109331580 + MER4B-int LTR ERV1 2781 2519 -3962 1749 152 47 0 chr1 172862084 172862236 -109331428 - AluSx SINE Alu -22 290 147 207 0 0 0 chr1 172862236 172862259 -109331405 + (TG)n Simple_repeat Simple_repeat 2 24 0 1749 152 47 0 chr1 172862259 172862383 -109331281 - AluSx SINE Alu -165 147 1 8361 109 48 44 chr1 172862383 172862726 -109330938 + MER4B-int LTR ERV1 2518 2858 -3623 1017 143 0 0 chr1 172862726 172862873 -109330791 + MER4E LTR ERV1 611 757 -9 1823 148 36 0 chr1 172862879 172863182 -109330482 - MER57A LTR ERV1 -89 314 1 996 93 65 0 chr1 172863183 172863322 -109330342 - MER57A-int LTR ERV1 -1 7536 7389 726 133 99 49 chr1 172863323 172863558 -109330106 - LTR54B LTR ERV1 -214 284 3 3787 120 11 9 chr1 172863558 172864110 -109329554 - MER57-int LTR ERV1 -391 7146 6594 2119 130 0 3 chr1 172864119 172864419 -109329245 - AluSx SINE Alu -12 300 2 1948 196 19 19 chr1 172864910 172865272 -109328392 - MLT1A1 LTR MaLR -3 362 1 244 67 0 0 chr1 172865383 172865428 -109328236 + LTR66 LTR ERVL 395 439 -171 229 65 0 0 chr1 172865396 172865442 -109328222 - LTR66 LTR ERVL -171 439 394 * 357 162 0 0 chr1 172865442 172865510 -109328154 + (TA)n Simple_repeat Simple_repeat 2 69 0 1329 185 27 15 chr1 172865514 172865773 -109327891 - L1MC2 LINE L1 -8 6336 6075 2603 149 75 17 chr1 172866639 172867116 -109326548 - MLT1D LTR MaLR 0 505 1 1892 136 57 0 chr1 172868206 172868486 -109325178 - AluJb SINE Alu -16 296 1 392 233 145 31 chr1 172868631 172868790 -109324874 - MIR SINE MIR -71 191 15 2655 153 31 19 chr1 172868895 172869371 -109324293 + LTR15 LTR ERV1 1 482 -11 22 0 0 0 chr1 172869847 172869869 -109323795 + AT_rich Low_complexity Low_complexity 1 22 0 2586 53 7 0 chr1 172870049 172870350 -109323314 + AluSp SINE Alu 1 303 -10 223 238 105 38 chr1 172870627 172870732 -109322932 + L2 LINE L2 3200 3311 -2 * 348 239 35 26 chr1 172870718 172870831 -109322833 - MIR SINE MIR -67 141 28 2271 169 32 74 chr1 172871003 172871065 -109322599 - MLT1D LTR MaLR 0 505 442 1939 157 0 22 chr1 172871065 172871384 -109322280 + AluJb SINE Alu 1 312 0 2271 169 32 74 chr1 172871384 172871848 -109321816 - MLT1D LTR MaLR -63 442 1 1850 170 3 0 chr1 172871906 172872194 -109321470 + AluJb SINE Alu 1 289 -23 1663 191 3 7 chr1 172872236 172872540 -109321124 - AluJo SINE Alu 0 303 1 2257 226 79 49 chr1 172872601 172872737 -109320927 - MER20B DNA MER1_type -30 753 623 569 160 24 16 chr1 172872737 172872862 -109320802 + L1MB7 LINE L1 6044 6169 -15 2257 226 79 49 chr1 172872862 172873456 -109320208 - MER20B DNA MER1_type -160 623 1 907 290 0 8 chr1 172873509 172873761 -109319903 - MIR SINE MIR 0 262 13 216 0 0 0 chr1 172873926 172873950 -109319714 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 228 67 0 0 chr1 172873949 172873979 -109319685 + (CA)n Simple_repeat Simple_repeat 1 30 0 399 41 0 0 chr1 172874036 172874085 -109319579 + (CA)n Simple_repeat Simple_repeat 2 50 0 432 264 7 28 chr1 172874780 172874924 -109318740 + MIR SINE MIR 81 221 -41 2219 121 0 0 chr1 172875081 172875379 -109318285 - AluSg SINE Alu -12 298 1 492 289 25 6 chr1 172875389 172875548 -109318116 + Charlie8 DNA MER1_type 61 222 -2195 855 158 0 20 chr1 172876545 172876691 -109316973 - FLAM_C SINE Alu 0 143 1 736 228 55 5 chr1 172876979 172877177 -109316487 - MIR SINE MIR -34 228 23 454 276 104 8 chr1 172878101 172878235 -109315429 + MIR SINE MIR 10 156 -106 192 302 78 54 chr1 172879277 172879406 -109314258 - L2 LINE L2 0 3272 3141 637 243 161 79 chr1 172879919 172880275 -109313389 + MLT1J2 LTR MaLR 1 381 -69 282 275 34 51 chr1 172880771 172880949 -109312715 - L1ME LINE L1 -308 5813 5639 229 278 26 87 chr1 172881241 172881356 -109312308 + MIR3 SINE MIR 77 184 -24 341 270 63 0 chr1 172881691 172881802 -109311862 - L2 LINE L2 -8 3305 3188 2421 166 45 17 chr1 172881811 172882274 -109311390 - MER66B LTR ERV1 -10 476 1 409 343 48 28 chr1 172882382 172882630 -109311034 - L2 LINE L2 -193 3079 2827 330 229 0 36 chr1 172882697 172882804 -109310860 + MIR SINE MIR 5 106 -102 207 0 0 0 chr1 172883584 172883607 -109310057 + (TA)n Simple_repeat Simple_repeat 2 24 0 2125 98 18 0 chr1 172883878 172884153 -109309511 + AluSx SINE Alu 1 280 -32 251 27 0 27 chr1 172884155 172884192 -109309472 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 278 301 142 23 chr1 172884347 172884523 -109309141 - MIR SINE MIR -52 210 14 186 310 35 53 chr1 172885705 172885818 -109307846 - L2 LINE L2 -23 3249 3139 220 311 67 52 chr1 172885898 172886033 -109307631 + L2 LINE L2 3010 3146 -126 353 293 17 25 chr1 172886499 172886621 -109307043 + MIR SINE MIR 30 149 -64 243 0 0 0 chr1 172886621 172886648 -109307016 + (TA)n Simple_repeat Simple_repeat 2 28 0 467 203 0 0 chr1 172886701 172886780 -109306884 - Tigger5 DNA MER2_type 0 2323 2245 378 184 0 53 chr1 172886836 172886912 -109306752 - Tigger5 DNA MER2_type -2251 72 1 381 313 61 72 chr1 172886913 172887191 -109306473 - L2 LINE L2 -4 3268 2994 199 346 56 9 chr1 172887322 172887429 -109306235 - L2 LINE L2 -465 2849 2738 268 215 224 19 chr1 172887447 172887554 -109306110 - L1ME4a LINE L1 -5 6116 5988 234 324 57 0 chr1 172887841 172887946 -109305718 - L2 LINE L2 -5 3308 3198 1086 165 0 0 chr1 172888074 172888238 -109305426 + AluJb SINE Alu 133 296 -16 308 246 0 14 chr1 172888509 172888578 -109305086 + tRNA-Asn-AAC tRNA tRNA 1 68 -9 350 157 60 22 chr1 172888606 172888740 -109304924 + CT-rich Low_complexity Low_complexity 2 140 0 5758 175 32 19 chr1 172889187 172890479 -109303185 - L1MC2 LINE L1 -2 6342 5029 2327 99 13 0 chr1 172890479 172890782 -109302882 - AluSg SINE Alu -3 307 1 5758 175 32 19 chr1 172890782 172891104 -109302560 - L1MC2 LINE L1 -1315 5029 4712 1315 233 93 5 chr1 172891105 172891483 -109302181 - L1MCa LINE L1 -5997 429 19 226 284 9 37 chr1 172891503 172891612 -109302052 - L1MB8 LINE L1 -37 6141 6036 2282 100 3 3 chr1 172891976 172892275 -109301389 - AluSp SINE Alu -14 299 1 1996 141 0 3 chr1 172892518 172892809 -109300855 + AluSg1 SINE Alu 1 290 -19 1243 259 131 9 chr1 172892830 172893259 -109300405 - MLT1E2 LTR MaLR -3 623 143 1975 112 196 0 chr1 172893273 172893631 -109300033 - MSTA LTR MaLR 0 428 1 244 236 36 0 chr1 172893649 172893704 -109299960 - MLT1E2 LTR MaLR -509 145 89 637 219 37 165 chr1 172893758 172893972 -109299692 - MLT1E2-int LTR MaLR 0 1735 1495 1964 142 10 7 chr1 172893972 172894268 -109299396 - AluSx SINE Alu -15 297 1 637 219 37 165 chr1 172894268 172894540 -109299124 - MLT1E2-int LTR MaLR -240 1495 961 180 258 52 0 chr1 172895294 172895391 -109298273 + MIR3 SINE MIR 104 205 -3 258 370 50 0 chr1 172896418 172896537 -109297127 - L2 LINE L2 0 3272 3148 195 295 26 13 chr1 172898353 172898431 -109295233 + MIR3 SINE MIR 82 160 -48 21 0 0 0 chr1 172899344 172899365 -109294299 + AT_rich Low_complexity Low_complexity 1 21 0 447 286 0 7 chr1 172900956 172901103 -109292561 + MIR SINE MIR 96 241 -21 350 221 42 42 chr1 172902006 172902101 -109291563 - L1MB5 LINE L1 -9 6165 6071 201 333 57 0 chr1 172905076 172905181 -109288483 - L2 LINE L2 -5 3267 3157 202 295 43 68 chr1 172905192 172905399 -109288265 - L2 LINE L2 -1315 1999 1798 269 298 8 8 chr1 172956149 172956273 -109237391 + GA-rich Low_complexity Low_complexity 1 124 0 205 343 0 0 chr1 172956330 172956429 -109237235 + GA-rich Low_complexity Low_complexity 2 100 0 191 359 13 13 chr1 172959079 172959157 -109234507 + L2 LINE L2 3195 3272 0 397 288 130 17 chr1 172959674 172959851 -109233813 - MIR3 SINE MIR -6 202 6 483 230 90 0 chr1 172959977 172960077 -109233587 + MER81 DNA DNA 6 114 0 204 376 77 20 chr1 172960079 172960326 -109233338 - L2 LINE L2 -629 2685 2425 184 342 13 0 chr1 172964033 172964112 -109229552 - L3b LINE CR1 -190 1393 1314 243 0 0 0 chr1 172964502 172964529 -109229135 + (TC)n Simple_repeat Simple_repeat 2 28 0 379 293 127 30 chr1 172964699 172964931 -109228733 - MIR3 SINE MIR 0 262 1 744 149 55 1 chr1 172965596 172965735 -109227929 - L1M1 LINE L1 -758 5544 5400 364 234 11 0 chr1 172965708 172965802 -109227862 - L1M4 LINE L1 -1094 5052 4958 * 6570 68 11 35 chr1 172965897 172967427 -109226237 - SVA Other Other -839 1385 10 215 169 14 0 chr1 172967444 172967515 -109226149 + GA-rich Low_complexity Low_complexity 2 73 0 385 173 27 13 chr1 172967625 172967700 -109225964 - AluY SINE Alu -229 79 4 220 311 14 0 chr1 172969588 172969662 -109224002 - MIR SINE MIR -167 95 21 294 263 0 0 chr1 172970259 172970339 -109223325 - L1M1 LINE L1 -3947 3618 3539 234 0 0 0 chr1 172970873 172970899 -109222765 + (TA)n Simple_repeat Simple_repeat 2 27 0 361 214 119 40 chr1 172974089 172974215 -109219449 + L2 LINE L2 3137 3272 0 402 21 0 0 chr1 172974377 172974424 -109219240 + (TG)n Simple_repeat Simple_repeat 1 47 0 421 391 112 11 chr1 172974970 172975336 -109218328 + L2 LINE L2 2869 3271 -1 987 340 52 42 chr1 172976385 172977054 -109216610 + L2 LINE L2 2636 3310 -3 254 382 45 0 chr1 172977304 172977379 -109216285 + L2 LINE L2 3139 3217 -55 308 330 37 30 chr1 172977379 172977529 -109216135 + MIR SINE MIR 4 146 -62 5651 108 31 7 chr1 172977546 172978567 -109215097 + L1PA16 LINE L1 5121 6163 -3 2184 214 17 5 chr1 172978722 172979143 -109214521 + MSTB LTR MaLR 1 426 0 233 146 24 0 chr1 172979143 172979184 -109214480 + MSTB-int LTR MaLR 1 42 -1609 3143 179 22 30 chr1 172979289 172979691 -109213973 + MSTB-int LTR MaLR 1019 1417 -234 2080 131 0 3 chr1 172979691 172980028 -109213636 - AluSg SINE Alu 0 336 1 3143 179 22 30 chr1 172980028 172980262 -109213402 + MSTB-int LTR MaLR 1417 1651 0 2500 158 26 9 chr1 172980262 172980681 -109212983 + MSTB LTR MaLR 1 426 0 270 0 0 0 chr1 172982607 172982637 -109211027 + (T)n Simple_repeat Simple_repeat 1 30 0 2057 131 0 73 chr1 172983906 172984304 -109209360 + MLT1B LTR MaLR 22 390 0 433 211 0 0 chr1 172984493 172984569 -109209095 - L2 LINE L2 0 3272 3197 311 336 9 0 chr1 172984585 172984695 -109208969 + MIR3 SINE MIR 77 187 -21 209 402 58 36 chr1 172985410 172985758 -109207906 + L2 LINE L2 2698 3050 -222 248 75 0 0 chr1 172985873 172985913 -109207751 - L1PB1 LINE L1 0 6151 6112 1973 124 11 0 chr1 172985920 172986195 -109207469 - AluSq SINE Alu -35 278 1 1933 112 72 0 chr1 172986844 172987122 -109206542 - AluSx SINE Alu -14 298 1 1066 336 95 17 chr1 172987286 172988026 -109205638 - L2 LINE L2 -199 3073 2257 1071 140 19 110 chr1 172988164 172988428 -109205236 + L1MA9 LINE L1 5934 6173 -139 2620 129 42 17 chr1 172988443 172988917 -109204747 - L1MA2 LINE L1 0 6304 5819 585 168 8 0 chr1 172988935 172989054 -109204610 + L1MA9 LINE L1 6193 6312 0 571 326 10 10 chr1 172989105 172989298 -109204366 + MIR3 SINE MIR 15 207 -1 411 171 11 0 chr1 172990485 172990573 -109203091 + L1M4 LINE L1 4958 5046 -1100 229 373 69 0 chr1 172990769 172990871 -109202793 + L2 LINE L2 3132 3240 -32 278 235 73 0 chr1 172990921 172990989 -109202675 - L2 LINE L2 0 3272 3200 682 283 21 29 chr1 172991111 172991351 -109202313 - MIR SINE MIR -7 255 18 280 309 30 124 chr1 172991501 172991734 -109201930 - L2 LINE L2 -94 3178 2968 6846 34 8 2 chr1 172991830 172992888 -109200776 + L1PA5 LINE L1 5054 6118 -36 318 256 12 12 chr1 172992945 172993031 -109200633 - L3 LINE CR1 -37 1540 1455 843 273 43 6 chr1 172993914 172994234 -109199430 - L2 LINE L2 -251 3062 2735 234 62 0 0 chr1 172994566 172994598 -109199066 + (CA)n Simple_repeat Simple_repeat 2 33 0 1513 116 23 12 chr1 172994666 172994924 -109198740 - L1MA9 LINE L1 -55 6257 5997 * 8317 227 52 36 chr1 172994918 172997994 -109195670 - L1 LINE L1 -1786 5779 2717 1983 163 0 3 chr1 172997994 172998301 -109195363 - AluJb SINE Alu -6 306 1 8317 227 52 36 chr1 172998301 172999019 -109194645 - L1 LINE L1 -4848 2717 2012 531 337 103 59 chr1 173000579 173001114 -109192550 - L2 LINE L2 0 3272 2716 231 296 62 25 chr1 173002145 173002226 -109191438 - MIR SINE MIR -95 113 30 250 294 15 0 chr1 173003269 173003337 -109190327 - MIR3 SINE MIR -3 205 137 225 268 47 0 chr1 173003876 173003992 -109189672 - L1ME4a LINE L1 -28 6093 5969 186 118 0 0 chr1 173003992 173004026 -109189638 + (CA)n Simple_repeat Simple_repeat 1 34 0 280 310 53 35 chr1 173004050 173004163 -109189501 + L2 LINE L2 3150 3264 -8 1261 218 83 19 chr1 173004804 173005116 -109188548 - MER58B DNA MER1_type -1 340 9 283 353 15 15 chr1 173005287 173005423 -109188241 + L3 LINE CR1 1310 1445 -132 578 250 87 49 chr1 173005849 173006033 -109187631 - MIR SINE MIR -32 230 40 216 0 0 0 chr1 173006789 173006813 -109186851 + (TA)n Simple_repeat Simple_repeat 2 25 0 180 0 0 0 chr1 173006813 173006833 -109186831 + (GA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr1 173007501 173007521 -109186143 + (TA)n Simple_repeat Simple_repeat 2 21 0 1137 194 40 5 chr1 173007542 173007743 -109185921 - AluJo SINE Alu -19 293 86 231 114 0 0 chr1 173007994 173008029 -109185635 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 825 297 69 4 chr1 173008105 173008351 -109185313 + L2 LINE L2 2809 3070 -243 327 247 210 25 chr1 173008384 173008546 -109185118 - L2 LINE L2 -566 2748 2557 343 44 0 0 chr1 173008570 173008615 -109185049 - AluSg/x SINE Alu -169 131 87 1114 158 0 0 chr1 173008615 173008786 -109184878 + AluSg/x SINE Alu 132 302 -8 195 323 52 10 chr1 173008858 173008954 -109184710 + L2 LINE L2 1739 1838 -1476 22 35 0 0 chr1 173009361 173009390 -109184274 + AT_rich Low_complexity Low_complexity 1 29 0 453 313 77 11 chr1 173009765 173009947 -109183717 - MIR SINE MIR -52 210 17 10603 151 31 19 chr1 173010249 173011774 -109181890 - L1MA4 LINE L1 0 6300 4796 580 36 36 0 chr1 173011774 173011857 -109181807 - L1PA4 LINE L1 -5 6150 6065 10603 151 31 19 chr1 173011857 173013421 -109180243 - L1MA4 LINE L1 -1504 4796 3183 531 163 0 0 chr1 173013421 173013568 -109180096 + (TA)n Simple_repeat Simple_repeat 1 147 0 779 180 0 6 chr1 173013645 173013823 -109179841 - L1MA4 LINE L1 -2985 3161 2985 191 171 24 0 chr1 173013925 173013966 -109179698 - L2 LINE L2 -557 2757 2716 192 267 200 0 chr1 173014922 173014997 -109178667 + MIR3 SINE MIR 117 206 -2 264 258 0 0 chr1 173015272 173015338 -109178326 - MIR SINE MIR -13 249 184 1752 158 28 6 chr1 173015343 173015660 -109178004 - L1PA16 LINE L1 -9 6157 5834 784 293 19 9 chr1 173015665 173015880 -109177784 - MIR SINE MIR -44 218 2 2675 165 63 26 chr1 173017184 173017771 -109175893 - L1MA10 LINE L1 0 6334 5572 214 277 60 24 chr1 173017920 173018003 -109175661 + L2 LINE L2 3187 3272 0 309 267 53 96 chr1 173018317 173018504 -109175160 + MIR3 SINE MIR 18 196 -12 2284 82 109 0 chr1 173019143 173019483 -109174181 - MER51B LTR ERV1 0 377 1 217 349 0 84 chr1 173021518 173021601 -109172063 - MIR SINE MIR -94 114 39 242 264 126 0 chr1 173021713 173021800 -109171864 + MIR SINE MIR 131 228 -34 187 232 18 54 chr1 173022495 173022551 -109171113 + MIR SINE MIR 18 71 -137 204 400 43 0 chr1 173023503 173023643 -109170021 + L2 LINE L2 3125 3270 -2 347 227 13 0 chr1 173023720 173023795 -109169869 + MIR SINE MIR 29 104 -158 276 170 19 0 chr1 173023780 173023833 -109169831 + MIR SINE MIR 209 262 0 * 4029 205 30 13 chr1 173024033 173025092 -109168572 - L1 LINE L1 -2720 4845 3769 278 313 42 21 chr1 173025512 173025656 -109168008 + L2 LINE L2 2933 3079 -193 241 194 42 14 chr1 173025660 173025732 -109167932 - LTR33 LTR ERVL 0 521 448 334 274 42 0 chr1 173025789 173025879 -109167785 - LTR33 LTR ERVL -330 191 98 1698 166 35 35 chr1 173025879 173026222 -109167442 + MLT2B1 LTR ERVL 3 345 -175 228 100 0 0 chr1 173026235 173026275 -109167389 + (TA)n Simple_repeat Simple_repeat 2 41 0 1110 130 25 20 chr1 173026313 173026513 -109167151 + Tigger2 DNA MER2_type 2280 2480 -238 184 0 30 61 chr1 173026513 173026546 -109167118 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 429 197 121 23 chr1 173026564 173026760 -109166904 + L1ME1 LINE L1 5801 6001 -165 2135 127 127 21 chr1 173026782 173027169 -109166495 + MSTA LTR MaLR 1 428 0 310 169 22 0 chr1 173027188 173027277 -109166387 + (TA)n Simple_repeat Simple_repeat 1 91 0 8644 30 1 7 chr1 173027286 173028376 -109165288 + L1P LINE L1 4019 5101 -1045 2432 207 25 116 chr1 173028386 173029840 -109163824 - L1 LINE L1 -3783 3782 2533 1805 209 44 29 chr1 173029905 173030383 -109163281 + MER31A LTR ERV1 1 485 0 1641 92 0 0 chr1 173030507 173030714 -109162950 + AluY SINE Alu 99 305 -6 836 278 104 21 chr1 173032275 173032613 -109161051 - L2 LINE L2 -1058 2256 1891 * 1034 318 136 39 chr1 173032609 173032849 -109160815 + L2 LINE L2 2293 2508 -805 1954 172 0 0 chr1 173032849 173033146 -109160518 - AluSx SINE Alu -15 297 1 1034 318 136 39 chr1 173033146 173033833 -109159831 + L2 LINE L2 2508 3312 -1 384 369 72 45 chr1 173035428 173036021 -109157643 + L2 LINE L2 2245 2853 -461 254 296 63 117 chr1 173036087 173036310 -109157354 + L2 LINE L2 2932 3142 -130 342 169 102 76 chr1 173036426 173036544 -109157120 - MER103 DNA DNA -45 121 1 281 258 92 25 chr1 173036692 173036812 -109156852 - L2 LINE L2 -1294 2020 1893 441 147 0 0 chr1 173036891 173036959 -109156705 + AluSx SINE Alu 1 68 -245 1618 121 0 17 chr1 173037008 173037240 -109156424 + AluSx SINE Alu 68 295 -15 711 347 117 36 chr1 173037246 173037572 -109156092 - L2 LINE L2 -1544 1770 1472 2283 150 13 3 chr1 173037572 173037952 -109155712 - L1PB3 LINE L1 -4 6150 5767 711 347 117 36 chr1 173037952 173038318 -109155346 - L2 LINE L2 -1842 1472 997 1620 216 24 43 chr1 173038318 173038740 -109154924 - MLT2D LTR ERVL 0 414 1 711 347 117 36 chr1 173038740 173038878 -109154786 - L2 LINE L2 -2317 997 872 1585 157 19 15 chr1 173038914 173039264 -109154400 + L1M3e LINE L1 1816 2166 -4861 1452 178 55 63 chr1 173039475 173039840 -109153824 + MLT1A1 LTR MaLR 1 362 -3 193 312 117 0 chr1 173040036 173040113 -109153551 - MIR3 SINE MIR -45 163 78 437 281 61 0 chr1 173040181 173040295 -109153369 - L2 LINE L2 -5 3267 3147 252 322 39 50 chr1 173040294 173040474 -109153190 - MIR SINE MIR -20 242 65 * 428 273 101 4 chr1 173040779 173041017 -109152647 + L1ME4a LINE L1 5670 5930 -191 2550 108 5 22 chr1 173041765 173042135 -109151529 + THE1B LTR MaLR 1 364 0 335 297 23 38 chr1 173042168 173042302 -109151362 + MIR SINE MIR 14 149 -65 444 325 55 0 chr1 173042327 173042490 -109151174 - HAL1 LINE L1 -1196 1311 1140 951 158 5 33 chr1 173042493 173042677 -109150987 - MER3 DNA MER1_type 0 209 31 500 154 12 64 chr1 173042866 173043003 -109150661 + L1MA4A LINE L1 6166 6296 -4 3330 129 62 31 chr1 173043009 173043468 -109150196 - L1MA7 LINE L1 -7 6284 5798 207 0 0 0 chr1 173043468 173043491 -109150173 + (TG)n Simple_repeat Simple_repeat 2 24 0 3330 129 62 31 chr1 173043491 173043673 -109149991 - L1MA7 LINE L1 -493 5798 5623 1926 119 32 3 chr1 173043676 173044020 -109149644 + L1MA7 LINE L1 5254 5607 -705 443 259 18 0 chr1 173044382 173044494 -109149170 - L2 LINE L2 -10 3303 3190 328 359 96 41 chr1 173045608 173045878 -109147786 - L3 LINE CR1 -1 1576 1292 2479 86 0 0 chr1 173045919 173046222 -109147442 - AluSx SINE Alu -9 303 1 490 249 181 28 chr1 173046255 173046432 -109147232 + MIR SINE MIR 56 259 -3 395 170 27 71 chr1 173046424 173046536 -109147128 - L3 LINE CR1 -282 1295 1189 * 230 315 76 11 chr1 173046540 173046632 -109147032 + L2 LINE L2 3149 3246 -26 189 345 82 36 chr1 173047387 173047497 -109146167 + L3b LINE CR1 1456 1570 -13 182 299 47 71 chr1 173049544 173049671 -109143993 - L2 LINE L2 -176 3096 2973 131 77 0 0 chr1 173053249 173053534 -109140130 + AT_rich Low_complexity Low_complexity 1 285 0 227 143 0 0 chr1 173053627 173053669 -109139995 + L1M LINE L1 5347 5388 -782 878 129 8 0 chr1 173053827 173053951 -109139713 + FLAM_C SINE Alu 9 133 -10 225 0 0 0 chr1 173054098 173054123 -109139541 + (TA)n Simple_repeat Simple_repeat 1 25 0 1405 184 33 54 chr1 173054550 173055406 -109138258 + SVA Other Other 432 847 -539 1634 109 0 0 chr1 173055513 173055724 -109137940 + AluSc SINE Alu 73 283 -26 390 256 106 66 chr1 173056151 173056378 -109137286 - L2 LINE L2 0 3313 3078 276 286 43 130 chr1 173056382 173056567 -109137097 + L2 LINE L2 3009 3177 -95 1102 75 0 14 chr1 173056620 173056766 -109136898 - AluSp/q SINE Alu -12 301 158 1740 269 55 32 chr1 173057022 173057681 -109135983 - L1M3e LINE L1 -6356 674 1 357 301 70 32 chr1 173057717 173057873 -109135791 - MIR SINE MIR -81 181 20 750 230 29 11 chr1 173058333 173058507 -109135157 - MER5B DNA MER1_type -1 177 1 1200 327 85 18 chr1 173058507 173059165 -109134499 + L2 LINE L2 2163 2864 -450 317 385 66 51 chr1 173059172 173059445 -109134219 + L2 LINE L2 2996 3272 0 21 0 0 0 chr1 173059736 173059757 -109133907 + AT_rich Low_complexity Low_complexity 1 21 0 401 299 95 7 chr1 173059855 173060002 -109133662 + MIR SINE MIR 20 179 -83 2856 32 9 0 chr1 173060097 173060443 -109133221 - L1PA3 LINE L1 0 6155 5807 258 309 59 50 chr1 173061539 173061660 -109132004 - MIR SINE MIR -66 142 32 204 40 0 0 chr1 173062325 173062350 -109131314 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 642 290 32 16 chr1 173063549 173063735 -109129929 + MIR SINE MIR 3 191 -71 1613 127 0 4 chr1 173064011 173064239 -109129425 + AluSg/x SINE Alu 83 309 -1 326 244 8 0 chr1 173065259 173065378 -109128286 + (TA)n Simple_repeat Simple_repeat 2 121 0 245 222 16 16 chr1 173065466 173065529 -109128135 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 2187 108 24 3 chr1 173066262 173066558 -109127106 - AluSx SINE Alu -10 302 1 457 221 0 16 chr1 173066558 173066685 -109126979 + LTR37A LTR ERV1 246 370 -56 326 280 168 0 chr1 173067313 173067420 -109126244 - L2 LINE L2 -2 3311 3187 21 0 0 0 chr1 173068476 173068497 -109125167 + AT_rich Low_complexity Low_complexity 1 21 0 235 206 0 63 chr1 173069128 173069191 -109124473 + A-rich Low_complexity Low_complexity 1 59 0 27 0 0 0 chr1 173071538 173071565 -109122099 + AT_rich Low_complexity Low_complexity 1 27 0 223 111 200 0 chr1 173079476 173079521 -109114143 + L2 LINE L2 3209 3262 -10 804 189 88 98 chr1 173080191 173080509 -109113155 - L2 LINE L2 -1 3312 2998 344 302 59 74 chr1 173080637 173080839 -109112825 - L2 LINE L2 -52 3220 3022 207 0 0 0 chr1 173081409 173081432 -109112232 + (TTTAG)n Simple_repeat Simple_repeat 3 25 0 1848 157 3 7 chr1 173081432 173081718 -109111946 - AluJb SINE Alu -27 285 1 183 250 0 0 chr1 173081739 173081775 -109111889 + L2 LINE L2 3028 3063 -209 837 288 48 4 chr1 173081812 173082041 -109111623 - MIR SINE MIR -7 255 17 188 314 0 20 chr1 173082205 173082256 -109111408 + L2 LINE L2 3126 3175 -97 5997 167 52 17 chr1 173082495 173083927 -109109737 + Cheshire DNA MER1_type 1 1528 -892 5926 83 19 5 chr1 173083927 173084724 -109108940 - L1PA11 LINE L1 -1 6173 5366 1277 196 0 0 chr1 173084724 173084953 -109108711 + Cheshire DNA MER1_type 1517 1745 -675 2307 107 0 7 chr1 173084954 173085235 -109108429 + AluSc SINE Alu 1 281 -28 207 0 0 0 chr1 173085235 173085258 -109108406 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2307 107 0 7 chr1 173085258 173085285 -109108379 + AluSc SINE Alu 281 307 -2 1093 62 8 0 chr1 173085298 173085427 -109108237 + AluY SINE Alu 1 130 -181 2071 179 42 7 chr1 173085428 173085831 -109107833 + Cheshire DNA MER1_type 1733 2149 -271 710 60 7 12 chr1 173085831 173085980 -109107684 + AluSq SINE Alu 73 302 -11 700 122 70 64 chr1 173085980 173086136 -109107528 + MER58D DNA MER1_type 110 266 -120 349 320 47 0 chr1 173086290 173086440 -109107224 - L3 LINE CR1 -353 1224 1068 203 224 41 0 chr1 173086453 173086502 -109107162 - L2 LINE L2 -1 3312 3262 400 174 0 0 chr1 173087497 173087566 -109106098 + MER41B LTR ERV1 481 549 -86 321 362 0 0 chr1 173088730 173088824 -109104840 + MIR SINE MIR 39 132 -76 426 261 12 37 chr1 173089905 173090066 -109103598 + GA-rich Low_complexity Low_complexity 6 162 0 196 272 326 11 chr1 173090377 173090469 -109103195 - L2 LINE L2 -8 3264 3144 208 333 61 10 chr1 173091052 173091151 -109102513 + MIR SINE MIR 45 148 -60 692 261 0 0 chr1 173091484 173091622 -109102042 - MIR SINE MIR -108 154 17 317 272 37 0 chr1 173092299 173092380 -109101284 - MIR3 SINE MIR -27 181 98 1609 173 40 22 chr1 173092703 173093027 -109100637 - MLT2D LTR ERVL -2 412 83 2239 116 103 13 chr1 173093043 173093432 -109100232 + MER4C LTR ERV1 31 454 -11 277 167 56 0 chr1 173093579 173093633 -109100031 + MER113 DNA MER1_type? 6 62 -459 2290 100 0 0 chr1 173093648 173093948 -109099716 - AluSx SINE Alu -12 300 1 352 208 83 0 chr1 173095102 173095198 -109098466 + MIR SINE MIR 129 232 -30 687 273 78 61 chr1 173095647 173096006 -109097658 - L2 LINE L2 0 3313 2949 340 319 43 0 chr1 173096028 173096144 -109097520 - MIR SINE MIR -68 140 20 24 0 0 0 chr1 173097276 173097300 -109096364 + AT_rich Low_complexity Low_complexity 1 24 0 357 271 52 58 chr1 173097455 173097610 -109096054 + L2 LINE L2 3160 3313 0 1182 202 69 0 chr1 173098003 173098236 -109095428 + MIR SINE MIR 12 260 -2 239 143 41 0 chr1 173100000 173100049 -109093615 + T-rich Low_complexity Low_complexity 3 53 0 215 85 17 51 chr1 173100056 173100115 -109093549 + (CCCCCT)n Simple_repeat Simple_repeat 1 57 0 237 65 0 0 chr1 173100118 173100149 -109093515 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 1049 248 59 16 chr1 173100151 173100498 -109093166 - L1ME LINE L1 -505 5657 5295 * 1205 244 60 5 chr1 173100495 173100880 -109092784 + L1M4 LINE L1 4178 4583 -1563 8068 50 8 237 chr1 173100882 173102678 -109090986 - SVA Other Other -1 1385 1 477 126 19 29 chr1 173102682 173102785 -109090879 + CT-rich Low_complexity Low_complexity 1 102 0 552 190 27 29 chr1 173102944 173103487 -109090177 + CT-rich Low_complexity Low_complexity 1 541 0 383 314 143 49 chr1 173103630 173104139 -109089525 + L2 LINE L2 340 896 -2418 227 130 0 22 chr1 173104370 173104416 -109089248 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 321 309 93 0 chr1 173104684 173104781 -109088883 - MER91A DNA MER1_type -1 195 90 304 389 30 15 chr1 173104811 173104942 -109088722 - MER91A DNA MER1_type -63 133 1 441 237 278 5 chr1 173104942 173105136 -109088528 + MIR SINE MIR 16 262 0 13772 145 75 51 chr1 173105147 173107130 -109086534 - Tigger1 DNA MER2_type -1 2417 367 2210 98 0 0 chr1 173107130 173107433 -109086231 - AluSx SINE Alu 0 310 8 13772 145 75 51 chr1 173107433 173107809 -109085855 - Tigger1 DNA MER2_type -2051 367 1 1991 148 6 27 chr1 173108917 173109255 -109084409 - MER1B DNA MER1_type -8 331 1 463 300 6 38 chr1 173110035 173110195 -109083469 - MER5A DNA MER1_type -29 160 6 281 277 0 0 chr1 173110602 173110667 -109082997 - MIR SINE MIR -7 255 191 304 222 22 33 chr1 173110681 173110771 -109082893 - L1ME LINE L1 -1284 4862 4774 242 253 80 117 chr1 173111809 173111971 -109081693 + MIR SINE MIR 101 256 -6 8008 31 0 0 chr1 173112794 173113723 -109079941 - L1PA4 LINE L1 -3 6152 5224 538 269 60 15 chr1 173114106 173114307 -109079357 - L1ME1 LINE L1 -243 5923 5714 309 248 81 23 chr1 173114359 173114538 -109079126 - L1ME1 LINE L1 -641 5523 5326 28 0 0 0 chr1 173114544 173114572 -109079092 + AT_rich Low_complexity Low_complexity 1 28 0 907 301 74 19 chr1 173114577 173115169 -109078495 - L1ME1 LINE L1 -823 5323 4699 1927 108 56 0 chr1 173115169 173115455 -109078209 + AluSx SINE Alu 11 312 0 2163 214 79 12 chr1 173115500 173116019 -109077645 - L1ME1 LINE L1 -5 6161 5608 4093 138 81 3 chr1 173116030 173116788 -109076876 - Tigger3(Golem) DNA MER2_type -8 3021 2205 317 200 0 0 chr1 173116791 173116856 -109076808 - L1 LINE L1 -1024 5122 5058 229 175 95 0 chr1 173116852 173116915 -109076749 - L1ME1 LINE L1 -1013 5331 5263 * 5867 144 21 6 chr1 173167983 173169265 -109024399 + L1PB1 LINE L1 4854 6149 -2 * 12341 207 16 15 chr1 173169260 173173602 -109020062 + L1PA15 LINE L1 2756 7072 -531 1355 37 6 12 chr1 173173602 173173764 -109019900 - L1PA5 LINE L1 -7 6147 5987 14442 48 5 1 chr1 173173765 173176280 -109017384 - L1PA5 LINE L1 -29 6125 3602 1944 137 0 19 chr1 173176280 173176309 -109017355 + L1PA15 LINE L1 7061 7089 -514 2731 160 9 5 chr1 173176309 173176735 -109016929 + MSTA LTR MaLR 1 428 0 1944 137 0 19 chr1 173176735 173177071 -109016593 + L1PA15 LINE L1 7089 7598 -5 12173 129 17 47 chr1 173177203 173179704 -109013960 + L1P3 LINE L1 5 2505 -3956 398 57 75 0 chr1 173179704 173179757 -109013907 + L1PA7 LINE L1 6084 6140 -14 309 149 19 47 chr1 173179757 173179864 -109013800 + (TA)n Simple_repeat Simple_repeat 2 105 0 22 0 0 0 chr1 173179864 173179886 -109013778 + AT_rich Low_complexity Low_complexity 1 22 0 1487 114 18 0 chr1 173180062 173180282 -109013382 - Tigger4(Zombi) DNA MER2_type -5 2726 133 13843 44 1 0 chr1 173180283 173182657 -109011007 - L1PA4 LINE L1 -2 6153 3781 11536 57 1 0 chr1 173182644 173184805 -109008859 + L1PA5 LINE L1 3989 6154 0 * 1465 169 25 21 chr1 173184817 173185288 -109008376 + L1M1 LINE L1 5077 5552 -743 6240 117 24 6 chr1 173185288 173186253 -109007411 + L1MA3 LINE L1 5324 6305 0 29 28 0 0 chr1 173200746 173200782 -108992882 + AT_rich Low_complexity Low_complexity 1 36 0 526 307 58 37 chr1 173201956 173202282 -108991382 + L1MEc LINE L1 2027 2359 -4037 2356 287 112 32 chr1 173202548 173203684 -108989980 + L2 LINE L2 1340 2566 -748 1206 299 37 60 chr1 173203690 173204342 -108989322 + L2 LINE L2 1636 2272 -1042 198 71 0 0 chr1 173204344 173204372 -108989292 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 609 332 136 18 chr1 173204379 173204920 -108988744 - L2 LINE L2 -22 3291 2687 297 0 0 0 chr1 173204967 173205000 -108988664 + (TG)n Simple_repeat Simple_repeat 2 34 0 4709 241 107 84 chr1 173205094 173209615 -108984049 + L1MEc LINE L1 1311 5891 -348 319 309 87 7 chr1 173209615 173209764 -108983900 - L2 LINE L2 -720 2594 2434 697 269 152 65 chr1 173209793 173210238 -108983426 + L2 LINE L2 2593 3136 -177 1301 94 204 0 chr1 173210238 173210429 -108983235 - MER30 DNA MER1_type 0 230 1 697 269 152 65 chr1 173210429 173210624 -108983040 + L2 LINE L2 3136 3313 0 245 355 75 60 chr1 173211695 173212030 -108981634 + L2 LINE L2 2303 2642 -672 243 324 40 102 chr1 173212292 173212567 -108981097 + L2 LINE L2 2978 3235 -37 666 275 86 12 chr1 173212809 173213053 -108980611 - MIR SINE MIR 0 262 1 1055 330 199 8 chr1 173213300 173213819 -108979845 + L3 LINE CR1 576 995 -582 321 26 0 0 chr1 173213819 173213857 -108979807 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 1055 330 199 8 chr1 173213857 173214070 -108979594 + L3 LINE CR1 995 1448 -129 381 43 0 0 chr1 173215266 173215313 -108978351 + (TC)n Simple_repeat Simple_repeat 2 48 0 185 0 40 0 chr1 173215312 173215337 -108978327 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 207 0 0 0 chr1 173215604 173215627 -108978037 + (TG)n Simple_repeat Simple_repeat 1 23 0 257 125 0 21 chr1 173216393 173216441 -108977223 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 377 309 79 22 chr1 173216526 173216665 -108976999 - L2 LINE L2 0 3272 3126 233 326 196 25 chr1 173216853 173217221 -108976443 - L2 LINE L2 -454 2860 2430 657 281 52 28 chr1 173218767 173219016 -108974648 + MIR SINE MIR 6 260 -2 248 333 0 11 chr1 173219374 173219464 -108974200 + MLT1K LTR MaLR 33 121 -467 674 245 101 21 chr1 173219662 173219899 -108973765 + MLT1K LTR MaLR 316 571 -17 1374 130 17 29 chr1 173220130 173220368 -108973296 - L1MA6 LINE L1 0 6300 6066 5380 164 24 27 chr1 173220541 173221467 -108972197 + MER49 LTR ERV1 1 923 0 1119 310 81 23 chr1 173222011 173223869 -108969795 - L1ME3A LINE L1 -318 5852 3884 35 54 0 0 chr1 173223952 173224008 -108969656 + AT_rich Low_complexity Low_complexity 1 56 0 228 259 26 9 chr1 173224253 173224369 -108969295 + L1M4 LINE L1 2195 2312 -3834 887 285 92 18 chr1 173224730 173225242 -108968422 + L1M4 LINE L1 3548 4097 -2049 2838 178 22 0 chr1 173225287 173225826 -108967838 + L1MB3 LINE L1 5625 6175 -8 384 286 109 6 chr1 173225984 173226159 -108967505 + L1M4 LINE L1 4330 4522 -1624 544 197 63 0 chr1 173226177 173226304 -108967360 + L1M2 LINE L1 5561 5695 -596 1375 184 0 27 chr1 173226730 173226991 -108966673 - AluJo SINE Alu -16 296 43 274 259 103 0 chr1 173227601 173227717 -108965947 + MIR SINE MIR 122 249 -13 1938 175 78 7 chr1 173228114 173228549 -108965115 + Charlie1b DNA MER1_type 57 522 -1 541 219 0 33 chr1 173229168 173229319 -108964345 - HAL1b LINE L1 -4 1344 1199 196 426 30 13 chr1 173229493 173229723 -108963941 + L2 LINE L2 2820 3053 -219 29 28 0 0 chr1 173230818 173230854 -108962810 + AT_rich Low_complexity Low_complexity 1 36 0 249 92 79 13 chr1 173230858 173230934 -108962730 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 238 214 0 18 chr1 173232738 173232794 -108960870 + (CATATA)n Simple_repeat Simple_repeat 2 56 0 2348 100 0 0 chr1 173234802 173235103 -108958561 - AluSg SINE Alu -9 301 1 2412 78 0 0 chr1 173243684 173243979 -108949685 - AluY SINE Alu -16 295 1 237 139 0 0 chr1 173245471 173245514 -108948150 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 196 286 36 36 chr1 173245923 173246007 -108947657 + L2 LINE L2 3188 3271 -1 496 246 77 92 chr1 173246049 173246136 -108947528 - MIR SINE MIR 0 262 175 1021 165 60 0 chr1 173246136 173246354 -108947310 - L1MA3 LINE L1 -10 6295 6065 496 246 77 92 chr1 173246354 173246526 -108947138 - MIR SINE MIR -87 175 7 316 329 169 22 chr1 173246961 173247186 -108946478 - MIR SINE MIR -1 261 4 472 279 154 0 chr1 173247646 173247854 -108945810 + MIR SINE MIR 7 246 -16 268 129 0 32 chr1 173248036 173248098 -108945566 - L1MB7 LINE L1 0 6184 6125 231 156 22 0 chr1 173248126 173248171 -108945493 + MER75 DNA T2_type 459 504 0 943 181 6 35 chr1 173248822 173249031 -108944633 - AluJb SINE Alu 0 312 129 200 262 330 0 chr1 173249420 173249523 -108944141 + MIR SINE MIR 116 252 -10 423 0 0 0 chr1 173250680 173250727 -108942937 + (CA)n Simple_repeat Simple_repeat 1 47 0 395 281 281 6 chr1 173252007 173252178 -108941486 + MIR SINE MIR 2 219 -43 1422 251 130 34 chr1 173253717 173253917 -108939747 + L2 LINE L2 2461 2640 -673 1456 105 46 9 chr1 173253917 173254136 -108939528 + MER30 DNA MER1_type 4 230 0 1422 251 130 34 chr1 173254136 173254458 -108939206 + L2 LINE L2 2640 3035 -278 330 265 228 5 chr1 173254465 173254654 -108939010 + L1ME1 LINE L1 46 276 -6120 8417 215 74 35 chr1 173254684 173255955 -108937709 + L1ME1 LINE L1 2558 3778 -2457 3413 21 16 39 chr1 173255955 173256390 -108937274 + L1PA4 LINE L1 5730 6154 -1 8417 215 74 35 chr1 173256390 173256615 -108937049 + L1ME1 LINE L1 3778 3993 -2242 1677 163 35 10 chr1 173256615 173256937 -108936727 + AluJo SINE Alu 1 329 0 8417 215 74 35 chr1 173256937 173258967 -108934697 + L1ME1 LINE L1 3993 6232 -3 546 226 78 0 chr1 173259000 173259115 -108934549 + L2 LINE L2 3190 3313 0 385 252 40 41 chr1 173259140 173259290 -108934374 + MIR SINE MIR 40 192 -58 828 283 134 3 chr1 173259622 173259929 -108933735 - L2 LINE L2 -373 2941 2595 364 313 38 23 chr1 173260573 173260704 -108932960 + MIR SINE MIR 15 147 -115 319 312 58 36 chr1 173260710 173260848 -108932816 - L2 LINE L2 0 3313 3173 237 327 134 39 chr1 173261586 173261840 -108931824 + L2 LINE L2 2334 2611 -703 200 348 51 67 chr1 173261956 173262209 -108931455 + L2 LINE L2 2811 3059 -213 5420 121 13 4 chr1 173262500 173263338 -108930326 + Tigger1 DNA MER2_type 1 846 -1572 994 93 0 0 chr1 173263335 173263474 -108930190 + Tigger1 DNA MER2_type 1020 1158 -1260 * 3899 133 67 63 chr1 173263474 173264256 -108929408 - LTR1 LTR ERV1 0 785 1 13549 155 23 7 chr1 173264299 173267089 -108926575 - HUERS-P2 LTR ERV1 -1 3087 204 552 95 0 12 chr1 173267224 173267308 -108926356 - LTR1 LTR ERV1 0 785 703 * 6882 116 34 20 chr1 173267300 173268449 -108925215 + Tigger1 DNA MER2_type 1064 2228 -190 11274 164 34 19 chr1 173268452 173269383 -108924281 - L1MA4 LINE L1 -11 6289 5373 216 97 0 0 chr1 173269383 173269414 -108924250 + (TTA)n Simple_repeat Simple_repeat 2 32 0 11274 164 34 19 chr1 173269414 173271014 -108922650 - L1MA4 LINE L1 -927 5373 3701 2875 3 0 0 chr1 173271014 173271323 -108922341 + AluYa5 SINE Alu 1 309 -2 11274 164 34 19 chr1 173271323 173272148 -108921516 - L1MA4 LINE L1 -2599 3701 2890 1045 138 35 6 chr1 173272151 173272325 -108921339 + Tigger1 DNA MER2_type 2228 2406 -12 386 245 354 0 chr1 173272366 173272513 -108921151 - MIR SINE MIR -50 212 14 295 282 29 10 chr1 173273171 173273274 -108920390 - MLT2E LTR ERVL -14 614 510 533 311 85 40 chr1 173274467 173274911 -108918753 - MLT1J1 LTR MaLR -21 469 1 427 384 95 23 chr1 173274915 173275358 -108918306 + L2 LINE L2 2338 2812 -502 859 197 7 0 chr1 173275683 173275830 -108917834 - FRAM SINE Alu -24 152 5 2551 117 0 8 chr1 173276222 173276589 -108917075 - L1PB1 LINE L1 -3 6148 5785 269 135 19 0 chr1 173276590 173276642 -108917022 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 408 347 68 31 chr1 173276740 173276962 -108916702 - L3 LINE CR1 -333 1244 1015 2148 155 71 18 chr1 173276963 173277356 -108916308 - L1MB3 LINE L1 -95 6088 5675 403 217 8 23 chr1 173277413 173277519 -108916145 - L1MB3 LINE L1 -497 5686 5576 864 239 116 24 chr1 173277549 173277884 -108915780 - L1ME4a LINE L1 -256 5865 5500 476 231 114 22 chr1 173278165 173278345 -108915319 - MIR SINE MIR -54 208 16 3761 97 0 11 chr1 173280183 173280791 -108912873 - L1PA11 LINE L1 -391 5777 5176 2933 81 42 19 chr1 173280791 173281200 -108912464 + L1PA11 LINE L1 5756 6174 0 610 290 91 22 chr1 173281201 173281432 -108912232 - MIR SINE MIR -13 249 3 264 281 33 13 chr1 173281486 173281639 -108912025 + (TA)n Simple_repeat Simple_repeat 2 157 0 3923 156 35 2 chr1 173281899 173283018 -108910646 + L1MA5 LINE L1 4793 5940 -360 26 50 0 0 chr1 173283576 173283616 -108910048 + AT_rich Low_complexity Low_complexity 1 40 0 1842 160 0 17 chr1 173283616 173283904 -108909760 - AluJo SINE Alu -27 285 3 263 304 112 39 chr1 173283957 173284342 -108909322 - L1MEd LINE L1 -3434 2695 2283 496 286 71 30 chr1 173284866 173285205 -108908459 - HAL1b LINE L1 -494 854 502 2027 198 131 16 chr1 173285287 173285736 -108907928 - MLT1D LTR MaLR 0 505 5 393 282 106 0 chr1 173285771 173285913 -108907751 - L1MEd LINE L1 -5961 158 2 2318 102 0 0 chr1 173285986 173286281 -108907383 - AluSx SINE Alu -17 295 1 810 292 77 53 chr1 173286529 173287372 -108906292 - L1MEc LINE L1 -4873 1523 661 326 310 44 6 chr1 173287805 173287963 -108905701 - L1MEc LINE L1 -6194 202 39 800 316 48 9 chr1 173287998 173288438 -108905226 - L1M4 LINE L1 -1313 4833 4377 770 225 44 33 chr1 173288455 173288799 -108904865 - L1MA9 LINE L1 0 6312 4182 180 315 0 19 chr1 173289040 173289094 -108904570 + MIR SINE MIR 100 152 -56 21 0 0 0 chr1 173289156 173289177 -108904487 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 173289301 173289322 -108904342 + AT_rich Low_complexity Low_complexity 1 21 0 277 185 259 74 chr1 173289589 173289724 -108903940 - L2 LINE L2 -1 3312 3153 282 348 37 18 chr1 173289873 173290037 -108903627 - MIR SINE MIR -51 211 45 584 326 64 8 chr1 173290582 173290729 -108902935 - MIR SINE MIR 0 262 96 799 222 29 111 chr1 173290729 173290823 -108902841 + MER58A DNA MER1_type 1 101 -2319 10797 51 24 36 chr1 173290823 173292227 -108901437 - SVA Other Other 0 1386 1 799 222 29 111 chr1 173292227 173292375 -108901289 + MER58A DNA MER1_type 101 223 -1 584 326 64 8 chr1 173292375 173292463 -108901201 - MIR SINE MIR -166 96 14 719 204 81 52 chr1 173292484 173292656 -108901008 + MER45A DNA AcHobo 2 178 0 1662 161 46 23 chr1 173292906 173293211 -108900453 - AluJb SINE Alu 0 312 1 2059 112 91 38 chr1 173293939 173294278 -108899386 - THE1B LTR MaLR -7 357 1 236 308 8 43 chr1 173294278 173294395 -108899269 + L3 LINE CR1 1382 1494 -83 450 190 30 30 chr1 173295609 173295709 -108897955 + L1MA5 LINE L1 5983 6082 -218 1128 122 4 17 chr1 173295722 173295983 -108897681 - MER1B DNA MER1_type -16 323 31 1560 123 0 0 chr1 173295985 173296213 -108897451 + L1MA5 LINE L1 6071 6298 -2 261 83 0 0 chr1 173297216 173297252 -108896412 + (CA)n Simple_repeat Simple_repeat 2 37 0 33143 31 1 0 chr1 173298408 173303106 -108890558 - L1PA3 LINE L1 0 6155 1454 4512 140 27 22 chr1 173303105 173303886 -108889778 - L1MA4A LINE L1 -181 6122 5338 * 526 303 7 0 chr1 173304054 173304196 -108889468 + MIR SINE MIR 107 249 -13 * 877 252 29 0 chr1 173304170 173304376 -108889288 - MIR SINE MIR -38 224 13 197 359 125 37 chr1 173305599 173305894 -108887770 - L2 LINE L2 0 3272 2952 595 292 66 64 chr1 173305968 173306499 -108887165 - L2 LINE L2 -448 2866 2335 266 326 93 27 chr1 173306649 173306784 -108886880 - L2 LINE L2 -1292 2022 1897 5004 137 14 37 chr1 173306784 173307586 -108886078 + LTR39 LTR ERV1 1 783 0 266 326 93 27 chr1 173307586 173307815 -108885849 - L2 LINE L2 -1417 1897 1634 235 275 76 11 chr1 173308488 173308627 -108885037 - MIR SINE MIR -56 206 53 181 200 0 0 chr1 173310331 173310361 -108883303 - L2 LINE L2 -22 3291 3262 200 290 50 40 chr1 173310437 173310537 -108883127 - L2 LINE L2 -176 3096 2996 291 318 98 53 chr1 173310839 173311084 -108882580 + L2 LINE L2 3007 3262 -10 331 281 18 9 chr1 173311732 173311846 -108881818 + (TGGA)n Simple_repeat Simple_repeat 2 116 0 398 245 31 0 chr1 173312376 173312474 -108881190 - L1ME4a LINE L1 -228 5893 5793 239 280 100 0 chr1 173312783 173312883 -108880781 - MIR SINE MIR -57 205 96 * 296 270 11 22 chr1 173312870 173312959 -108880705 + L2 LINE L2 3221 3308 -5 242 335 102 69 chr1 173313983 173314317 -108879347 - L2 LINE L2 -18 3254 2910 348 290 0 0 chr1 173314445 173314552 -108879112 + (TG)n Simple_repeat Simple_repeat 2 108 0 594 306 187 27 chr1 173314583 173315342 -108878322 - L2 LINE L2 0 3313 2419 548 277 43 38 chr1 173315586 173315821 -108877843 - L2 LINE L2 -1 3312 3077 2405 175 8 0 chr1 173316121 173316521 -108877143 + MER57A LTR ERV1 1 403 0 625 237 5 34 chr1 173317932 173318136 -108875528 + MIR SINE MIR 39 233 -29 275 247 27 0 chr1 173318302 173318375 -108875289 - MIR3 SINE MIR -8 200 126 2354 277 46 21 chr1 173318793 173319709 -108873955 - L1MEc LINE L1 -4544 1852 914 704 207 41 0 chr1 173319714 173319835 -108873829 - FLAM_C SINE Alu -16 127 2 257 171 0 105 chr1 173319835 173319911 -108873753 - L1MEc LINE L1 -5474 922 855 3627 119 11 0 chr1 173319913 173320433 -108873231 - L1PA15 LINE L1 -1 6164 5639 5649 159 53 18 chr1 173320437 173321804 -108871860 - L1PA15 LINE L1 -633 5532 4125 1863 246 51 25 chr1 173321800 173322302 -108871362 - L1MEc LINE L1 -5530 866 352 * 5970 140 15 19 chr1 173322302 173323275 -108870389 - LTR5 LTR ERVK 0 969 1 1863 246 51 25 chr1 173323275 173323513 -108870151 - L1MEc LINE L1 -6044 352 122 1261 178 18 1 chr1 173323523 173323822 -108869842 + MER2 DNA MER2_type 2 344 -1 271 241 25 25 chr1 173323840 173323919 -108869745 - L1MEc LINE L1 -6296 100 22 185 205 0 0 chr1 173324691 173324730 -108868934 - L2 LINE L2 -21 3251 3213 * 268 362 14 0 chr1 173324696 173324834 -108868830 - MIR SINE MIR -20 242 103 342 141 56 0 chr1 173325220 173325291 -108868373 - MER116 DNA Mariner -5 75 1 312 284 78 9 chr1 173325925 173326041 -108867623 - MIR SINE MIR -107 155 32 961 295 56 30 chr1 173326473 173326938 -108866726 - L2 LINE L2 0 3313 2837 2586 52 0 3 chr1 173328395 173328702 -108864962 - AluY SINE Alu -3 308 3 411 175 58 136 chr1 173329072 173329278 -108864386 - L1MEc LINE L1 -964 5251 5062 1745 80 96 90 chr1 173329434 173329618 -108864046 - AluSq SINE Alu -10 303 115 2168 77 7 7 chr1 173329618 173329905 -108863759 - AluSg SINE Alu -23 287 1 1745 80 96 90 chr1 173329905 173330021 -108863643 - AluSq SINE Alu -198 115 1 1068 254 57 14 chr1 173330022 173330510 -108863154 - L1MEc LINE L1 -1477 4738 4230 236 258 32 48 chr1 173330514 173330638 -108863026 - L1MEc LINE L1 -2229 3986 3865 560 180 0 0 chr1 173330652 173330752 -108862912 + MLT2C1 LTR ERVL 48 147 -250 295 179 0 90 chr1 173330746 173330824 -108862840 + MLT2C1 LTR ERVL 279 349 -48 * 336 167 0 0 chr1 173330849 173330945 -108862719 + (CA)n Simple_repeat Simple_repeat 2 97 0 442 265 82 27 chr1 173330989 173331136 -108862528 + ERVL-C1 LTR ERVL 2 156 -5608 194 61 0 30 chr1 173331186 173331219 -108862445 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 7735 21 3 0 chr1 173331219 173332207 -108861457 - L1PA3 LINE L1 -24 6131 5141 2066 238 143 40 chr1 173332217 173333808 -108859856 - L1MEc LINE L1 -2537 3678 1834 2155 116 3 0 chr1 173334422 173334716 -108858948 - AluSx SINE Alu -17 295 1 215 275 59 22 chr1 173334962 173335109 -108858555 + MIR SINE MIR 35 148 -60 352 185 98 22 chr1 173335166 173335258 -108858406 - L1MA4A LINE L1 -23 6280 6182 21799 32 6 1 chr1 173335265 173338637 -108855027 - L1PA2 LINE L1 -5 6150 2772 206 247 37 62 chr1 173339671 173339752 -108853912 + MIR SINE MIR 27 105 -103 228 234 156 13 chr1 173339865 173339942 -108853722 - L2 LINE L2 0 3313 3226 1047 231 71 23 chr1 173339942 173340248 -108853416 - L1MC/D LINE L1 -2197 5588 5295 225 273 0 0 chr1 173340323 173340389 -108853275 + (TTTA)n Simple_repeat Simple_repeat 2 67 0 2017 145 0 0 chr1 173340613 173341042 -108852622 + AluJb SINE Alu 1 429 0 212 250 42 0 chr1 173341955 173342027 -108851637 + MIR SINE MIR 114 188 -74 3601 116 4 4 chr1 173342624 173343133 -108850531 - MER9 LTR ERVK 0 511 3 2320 91 3 10 chr1 173343135 173343444 -108850220 - HERVK9 LTR ERVK 0 5916 5610 5501 105 1 1 chr1 173343509 173344249 -108849415 - HERVK9 LTR ERVK -282 5634 4895 6766 183 25 43 chr1 173344356 173345570 -108848094 - HERVK9 LTR ERVK -4724 1192 1 3740 94 2 17 chr1 173345570 173346089 -108847575 - MER9 LTR ERVK 0 511 1 2022 101 52 14 chr1 173346654 173346942 -108846722 + AluSq SINE Alu 1 299 -14 280 255 47 0 chr1 173346989 173347088 -108846576 - MIR SINE MIR -61 147 83 1466 207 64 70 chr1 173347103 173347543 -108846121 + MER66A LTR ERV1 2 438 -40 314 282 55 49 chr1 173347982 173348145 -108845519 + MIR SINE MIR 28 191 -71 2340 137 7 79 chr1 173349396 173349840 -108843824 - MLT2D LTR ERVL -2 412 1 534 211 84 14 chr1 173350204 173350346 -108843318 - MIR SINE MIR -64 198 47 234 284 43 88 chr1 173350390 173350468 -108843196 - L1ME4a LINE L1 -177 5944 5864 2393 68 102 6 chr1 173350468 173350791 -108842873 + THE1A LTR MaLR 2 355 0 234 284 43 88 chr1 173350791 173350968 -108842696 - L1ME4a LINE L1 -257 5864 5713 2023 155 0 0 chr1 173350968 173351271 -108842393 + AluSx SINE Alu 1 303 -9 234 284 43 88 chr1 173351271 173351437 -108842227 - L1ME4a LINE L1 -408 5713 5541 600 246 41 49 chr1 173355059 173355303 -108838361 + MIR SINE MIR 20 261 -1 210 132 38 94 chr1 173355381 173355434 -108838230 - MIR SINE MIR -110 152 103 2376 101 3 0 chr1 173357248 173357554 -108836110 - AluSg SINE Alu -3 307 1 446 250 50 77 chr1 173357564 173357784 -108835880 + MARNA DNA Mariner 43 256 -330 327 360 0 9 chr1 173357915 173358029 -108835635 - L2 LINE L2 -10 3262 3150 195 100 0 0 chr1 173358075 173358105 -108835559 + (CATTT)n Simple_repeat Simple_repeat 1 30 0 228 286 110 39 chr1 173358120 173358290 -108835374 - MIR SINE MIR -63 145 2 480 170 50 92 chr1 173359009 173359150 -108834514 - MIR SINE MIR -99 163 29 2551 158 7 18 chr1 173359375 173359825 -108833839 + MER65A LTR ERV1 1 445 0 186 43 0 0 chr1 173360248 173360271 -108833393 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 627 234 90 27 chr1 173360273 173360495 -108833169 - MIR SINE MIR -19 243 8 519 170 0 0 chr1 173360886 173360986 -108832678 + (CA)n Simple_repeat Simple_repeat 1 100 0 9377 104 60 38 chr1 173362652 173364088 -108829576 - THE1C-int LTR MaLR -55 1525 59 1539 187 46 7 chr1 173364093 173364376 -108829288 - MER61D LTR ERV1 0 501 208 341 131 16 33 chr1 173364412 173364473 -108829191 - THE1C-int LTR MaLR -1520 60 1 2590 120 5 3 chr1 173364473 173364847 -108828817 - THE1C LTR MaLR 0 375 1 282 200 15 15 chr1 173366580 173366645 -108827019 + L2 LINE L2 3240 3304 -9 245 200 0 36 chr1 173366658 173366713 -108826951 + GA-rich Low_complexity Low_complexity 4 56 0 492 81 0 0 chr1 173366714 173366788 -108826876 + (GGGGA)n Simple_repeat Simple_repeat 4 77 0 277 222 0 0 chr1 173368119 173368173 -108825491 - BaEV-int LTR ERV1 -3457 3439 3386 1894 335 40 40 chr1 173368949 173370581 -108823083 - BaEV-int LTR ERV1 -2029 5756 4124 198 0 0 0 chr1 173370690 173370712 -108822952 + (TTA)n Simple_repeat Simple_repeat 1 22 0 359 370 12 0 chr1 173370719 173370892 -108822772 - BaEV-int LTR ERV1 -3684 4101 3927 204 243 30 71 chr1 173370892 173371061 -108822603 + (TCTCTG)n Simple_repeat Simple_repeat 5 166 0 * 347 367 6 6 chr1 173371005 173371185 -108822479 + CT-rich Low_complexity Low_complexity 1 180 0 301 321 43 16 chr1 173371187 173371371 -108822293 - BaEV-int LTR ERV1 -5398 1251 1063 554 298 18 23 chr1 173371668 173371886 -108821778 - BaEV-int LTR ERV1 -6779 1006 790 362 284 90 7 chr1 173372138 173372293 -108821371 - BaEV-int LTR ERV1 -6295 354 187 4980 221 35 32 chr1 173373907 173374954 -108818710 - L1 LINE L1 -2643 3503 2461 2321 86 7 0 chr1 173374954 173375246 -108818418 + AluSp SINE Alu 1 294 -19 4980 221 35 32 chr1 173375246 173375485 -108818179 - L1 LINE L1 -3685 2461 2224 189 0 0 0 chr1 173375485 173375506 -108818158 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4980 221 35 32 chr1 173375506 173375899 -108817765 - L1 LINE L1 -3922 2224 1890 4252 82 2 0 chr1 173375899 173376482 -108817182 - L1P LINE L1 -1278 4868 4285 9092 16 0 0 chr1 173376485 173378296 -108815368 - L1HS LINE L1 0 6155 4345 775 184 180 59 chr1 173378312 173378551 -108815113 - L1M4 LINE L1 -6227 315 48 868 129 29 0 chr1 173378590 173378730 -108814934 - L1PA16 LINE L1 -10 6156 6013 904 122 14 7 chr1 173378733 173378880 -108814784 + L1PA16 LINE L1 5869 6016 -150 785 175 28 0 chr1 173380030 173380173 -108813491 - L1PA16 LINE L1 -157 6009 5863 428 138 0 0 chr1 173380163 173380228 -108813436 + L1PA16 LINE L1 6006 6070 -96 * 2246 121 0 6 chr1 173380643 173380956 -108812708 - AluSx SINE Alu -1 311 1 2132 162 40 3 chr1 173381307 173381683 -108811981 + MLT1B LTR MaLR 1 390 0 31 58 0 0 chr1 173382183 173382235 -108811429 + AT_rich Low_complexity Low_complexity 1 52 0 333 0 0 0 chr1 173382293 173382330 -108811334 + (CA)n Simple_repeat Simple_repeat 1 37 0 325 277 97 32 chr1 173382332 173382428 -108811236 - MIR SINE MIR -85 177 89 2055 136 0 10 chr1 173382428 173382729 -108810935 + AluJb SINE Alu 1 298 -14 2352 76 0 25 chr1 173382731 173383048 -108810616 + AluY SINE Alu 1 309 -2 325 277 97 32 chr1 173383048 173383103 -108810561 - MIR SINE MIR -173 89 13 2105 109 17 7 chr1 173383463 173383756 -108809908 + AluSc SINE Alu 1 296 -13 373 287 48 36 chr1 173383872 173384039 -108809625 - MIR SINE MIR -10 252 84 197 280 56 56 chr1 173384380 173384487 -108809177 + MIR SINE MIR 30 136 -72 222 372 35 0 chr1 173385615 173385701 -108807963 + L2 LINE L2 3134 3222 -50 422 287 0 0 chr1 173385746 173385847 -108807817 - MIR SINE MIR -106 156 56 211 309 46 72 chr1 173386002 173386154 -108807510 + L2 LINE L2 3123 3270 -2 204 200 36 0 chr1 173386829 173386884 -108806780 + (TTA)n Simple_repeat Simple_repeat 2 58 0 432 298 30 8 chr1 173386950 173387081 -108806583 - MIR3 SINE MIR -61 147 14 256 159 16 16 chr1 173387578 173387641 -108806023 + CT-rich Low_complexity Low_complexity 3 65 0 231 292 15 0 chr1 173387648 173387713 -108805951 - L2 LINE L2 -15 3298 3233 234 227 133 27 chr1 173388513 173388588 -108805076 - L2 LINE L2 0 3272 3190 227 247 0 12 chr1 173389898 173389983 -108803681 + CT-rich Low_complexity Low_complexity 1 84 0 278 255 57 90 chr1 173390815 173391027 -108802637 - L1ME4a LINE L1 -18 6103 5899 241 145 32 0 chr1 173391030 173391092 -108802572 + (TA)n Simple_repeat Simple_repeat 1 64 0 329 339 12 24 chr1 173392252 173392417 -108801247 + MIR SINE MIR 23 185 -77 555 217 136 30 chr1 173392714 173392912 -108800752 - MIR SINE MIR 0 262 44 2637 183 24 20 chr1 173393013 173393504 -108800160 - MLT1D LTR MaLR -3 502 10 330 318 0 9 chr1 173394352 173394462 -108799202 + MIR3 SINE MIR 52 160 -48 789 261 64 5 chr1 173395054 173395272 -108798392 - MIR SINE MIR -10 252 22 2338 78 0 26 chr1 173395274 173395581 -108798083 + AluY SINE Alu 1 299 -12 290 227 133 91 chr1 173395601 173395931 -108797733 + L1ME4a LINE L1 5768 6111 -10 200 315 22 11 chr1 173396195 173396287 -108797377 - MIR SINE MIR -147 115 23 1814 109 98 0 chr1 173397740 173398022 -108795642 + AluSg SINE Alu 1 307 0 333 0 0 0 chr1 173399400 173399437 -108794227 + (TG)n Simple_repeat Simple_repeat 1 37 0 236 224 15 0 chr1 173400187 173400254 -108793410 + CT-rich Low_complexity Low_complexity 2 69 0 387 0 0 0 chr1 173400734 173400777 -108792887 + (TG)n Simple_repeat Simple_repeat 2 44 0 343 266 40 32 chr1 173401270 173401394 -108792270 - MIR3 SINE MIR -49 159 35 23 33 0 0 chr1 173402053 173402083 -108791581 + GC_rich Low_complexity Low_complexity 1 30 0 238 197 66 0 chr1 173402496 173402557 -108791107 + L2 LINE L2 3198 3262 -10 317 265 147 15 chr1 173402793 173402929 -108790735 - MIR SINE MIR -44 218 65 236 196 0 0 chr1 173403092 173403143 -108790521 + T-rich Low_complexity Low_complexity 1 51 0 441 281 44 88 chr1 173403514 173403788 -108789876 - MIR SINE MIR 0 262 1 231 231 187 0 chr1 173404008 173404099 -108789565 + L3 LINE CR1 1465 1572 -5 261 333 164 0 chr1 173404830 173404995 -108788669 - MIR SINE MIR 0 262 71 370 294 118 26 chr1 173405511 173405783 -108787881 - L2 LINE L2 0 3313 3017 354 330 65 11 chr1 173405989 173406174 -108787490 - MIR SINE MIR -63 199 5 209 323 85 11 chr1 173406619 173406808 -108786856 - L2 LINE L2 -785 2529 2327 355 259 9 19 chr1 173406970 173407078 -108786586 + L2 LINE L2 3207 3313 0 446 294 68 26 chr1 173409562 173409921 -108783743 - L1MEc LINE L1 -863 1627 1409 360 273 8 45 chr1 173409933 173410065 -108783599 - L1MEc LINE L1 -4896 1223 1097 686 311 85 52 chr1 173410164 173410646 -108783018 + MLT1J LTR MaLR 13 510 -1 914 297 120 58 chr1 173410647 173410782 -108782882 - L1MEc LINE L1 -5154 965 840 1104 172 11 0 chr1 173410782 173410968 -108782696 - L1MC1 LINE L1 -1 6332 6145 914 297 120 58 chr1 173410968 173411730 -108781934 - L1MEc LINE L1 -5279 840 12 190 331 120 49 chr1 173412341 173412483 -108781181 - L3 LINE CR1 -23 1554 1403 272 210 174 97 chr1 173413063 173413258 -108780406 - L2 LINE L2 0 3313 3104 338 276 53 53 chr1 173413566 173413831 -108779833 - L1MC5 LINE L1 -1 7960 7696 16708 167 28 2 chr1 173413862 173417889 -108775775 - L1PA13 LINE L1 0 6866 2735 851 246 30 65 chr1 173417889 173417986 -108775678 - L1MC5 LINE L1 -284 7677 7578 2727 64 6 0 chr1 173417986 173418328 -108775336 - LTR14A LTR ERVK 0 344 1 851 246 30 65 chr1 173418328 173418629 -108775035 - L1MC5 LINE L1 -383 7578 7293 1056 275 102 84 chr1 173418787 173419968 -108773696 - L1MC5 LINE L1 -728 7233 5976 2420 72 20 0 chr1 173420546 173420852 -108772812 + AluSq SINE Alu 1 312 -1 182 61 0 30 chr1 173421107 173421140 -108772524 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 194 61 0 30 chr1 173421346 173421357 -108772307 + (CAAA)n Simple_repeat Simple_repeat 2 12 -21 2238 209 20 71 chr1 173421357 173422002 -108771662 + LTR9 LTR ERV1 1 612 0 194 61 0 30 chr1 173422002 173422023 -108771641 + (CAAA)n Simple_repeat Simple_repeat 12 33 0 428 307 125 37 chr1 173422942 173423112 -108770552 + MER91A DNA MER1_type 13 196 0 617 237 174 13 chr1 173423506 173423730 -108769934 + MIR SINE MIR 2 261 -1 1794 253 86 22 chr1 173425136 173425674 -108767990 - MER90 LTR ERV1 -3 572 1 203 418 18 9 chr1 173425674 173425784 -108767880 - L2 LINE L2 -28 3244 3134 4137 181 29 43 chr1 173429906 173430702 -108762962 + LTR1 LTR ERV1 1 785 0 276 149 0 0 chr1 173431597 173431644 -108762020 + (CA)n Simple_repeat Simple_repeat 2 48 0 778 200 0 15 chr1 173431686 173431821 -108761843 + FLAM_C SINE Alu 1 133 0 1036 302 65 5 chr1 173431904 173432275 -108761389 + L1PA12 LINE L1 11 403 -7178 900 101 215 0 chr1 173432606 173432764 -108760900 - L1PA15-16 LINE L1 -4305 2544 2353 253 299 63 24 chr1 173432775 173432902 -108760762 + L1M2 LINE L1 686 817 -6032 343 254 120 69 chr1 173433017 173433234 -108760430 + L1M2 LINE L1 834 1061 -5788 3910 218 60 9 chr1 173433454 173434377 -108759287 + L1PA12 LINE L1 1781 2843 -4741 29543 43 1 2 chr1 173434380 173438752 -108754912 - L1PA4 LINE L1 0 6155 1787 12956 224 55 23 chr1 173438852 173440130 -108753534 - L1MA8 LINE L1 -375 7335 6099 2559 39 0 7 chr1 173440130 173440435 -108753229 + AluY SINE Alu 1 303 -8 12956 224 55 23 chr1 173440435 173444132 -108749532 - L1MA8 LINE L1 -1611 6099 2268 584 245 88 13 chr1 173445229 173445388 -108748276 - MER5B DNA MER1_type 0 178 8 228 227 0 53 chr1 173445909 173445984 -108747680 + CT-rich Low_complexity Low_complexity 5 75 0 182 406 65 16 chr1 173446023 173446146 -108747518 - L2 LINE L2 -37 3235 3107 6142 126 3 9 chr1 173447025 173448396 -108745268 + L1PA13 LINE L1 4788 6161 -2 314 314 51 8 chr1 173448869 173448987 -108744677 + L2 LINE L2 3188 3310 -3 398 270 44 51 chr1 173450028 173450165 -108743499 + L2 LINE L2 3178 3313 0 2000 134 20 3 chr1 173450765 173451064 -108742600 - AluSx SINE Alu -8 304 1 8095 214 27 7 chr1 173452067 173454127 -108739537 + L1PA16 LINE L1 3577 5699 -467 186 43 0 0 chr1 173454127 173454150 -108739514 + (TAA)n Simple_repeat Simple_repeat 2 24 0 8095 214 27 7 chr1 173454150 173454619 -108739045 + L1PA16 LINE L1 5699 6157 -9 470 155 21 0 chr1 173454641 173454738 -108738926 - L1 LINE L1 -1520 4626 4528 512 182 36 16 chr1 173454743 173454934 -108738730 - L1MA7 LINE L1 -2 6289 6028 349 165 148 17 chr1 173455061 173455176 -108738488 - L1 LINE L1 -1718 4428 4299 * 4829 168 34 12 chr1 173455171 173456330 -108737334 + L1MA8 LINE L1 4996 6173 -118 22 0 0 0 chr1 173458838 173458860 -108734804 + AT_rich Low_complexity Low_complexity 1 22 0 2290 71 0 0 chr1 173460394 173460703 -108732961 - AluY SINE Alu 0 309 1 361 296 206 0 chr1 173461725 173461914 -108731750 - MIR SINE MIR -25 237 10 231 207 103 81 chr1 173462904 173462991 -108730673 - L2 LINE L2 -45 3268 3180 23 33 0 0 chr1 173463545 173463575 -108730089 + AT_rich Low_complexity Low_complexity 1 30 0 180 254 28 56 chr1 173463941 173464012 -108729652 - MIR SINE MIR -176 86 18 209 313 157 20 chr1 173464298 173464496 -108729168 + L2 LINE L2 3048 3272 0 15841 62 1 6 chr1 173471211 173473265 -108720399 + L1P LINE L1 3122 5164 -982 249 0 0 0 chr1 173473452 173473480 -108720184 - L1P3 LINE L1 -5471 990 963 * 33499 49 8 1 chr1 173473478 173477612 -108716052 + L1P LINE L1 694 4857 -1289 208 283 177 26 chr1 173479019 173479132 -108714532 + L2 LINE L2 3142 3271 -1 21 0 0 0 chr1 173479318 173479339 -108714325 + AT_rich Low_complexity Low_complexity 1 21 0 1797 197 85 79 chr1 173482747 173483264 -108710400 - MLT2B1 LTR ERVL 0 520 1 3349 269 78 25 chr1 173483709 173486285 -108707379 - L1ME3 LINE L1 -231 5939 2965 1736 190 48 23 chr1 173486285 173486638 -108707026 - MLT1A1 LTR MaLR 0 365 4 3349 269 78 25 chr1 173486638 173486808 -108706856 - L1ME3 LINE L1 -3205 2965 2805 2297 167 54 7 chr1 173486899 173487306 -108706358 - MSTB LTR MaLR 0 426 1 676 335 84 15 chr1 173487563 173487984 -108705680 - L2 LINE L2 -71 3242 2790 531 204 0 75 chr1 173487986 173488133 -108705531 - L1M4 LINE L1 -3131 3015 2880 891 191 80 22 chr1 173488133 173488358 -108705306 - MER33 DNA MER1_type -86 238 1 228 326 35 35 chr1 173488366 173488507 -108705157 + MER5B DNA MER1_type 1 141 -37 182 355 82 55 chr1 173488603 173488713 -108704951 + L2 LINE L2 3137 3249 -23 189 0 0 0 chr1 173489370 173489391 -108704273 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr1 173490562 173490584 -108703080 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr1 173491852 173491878 -108701786 + (TC)n Simple_repeat Simple_repeat 1 26 0 459 0 0 0 chr1 173491878 173491929 -108701735 + (TG)n Simple_repeat Simple_repeat 2 52 0 317 248 35 90 chr1 173492540 173492685 -108700979 - LTR33A LTR ERVL -7 516 380 361 282 70 21 chr1 173493140 173493282 -108700382 - L2 LINE L2 -5 3308 3160 1041 277 68 26 chr1 173493296 173493881 -108699783 - L2 LINE L2 0 3313 2710 381 278 26 9 chr1 173493878 173493993 -108699671 - MIR SINE MIR -106 156 40 * 283 297 36 27 chr1 173494709 173494820 -108698844 + MIR SINE MIR 14 125 -137 181 200 18 18 chr1 173495297 173495352 -108698312 - MIR3 SINE MIR 0 208 154 198 0 0 0 chr1 173495422 173495444 -108698220 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 683 132 193 0 chr1 173495447 173495561 -108698103 - FRAM SINE Alu -30 146 11 277 310 131 21 chr1 173496308 173496453 -108697211 - MIR3 SINE MIR -3 205 45 377 167 17 0 chr1 173496692 173496752 -108696912 + MIR SINE MIR 45 105 -157 4181 147 9 6 chr1 173497120 173498314 -108695350 + L1MA4A LINE L1 4713 5910 -393 2911 159 24 2 chr1 173498286 173498821 -108694843 + L1MA6 LINE L1 5473 6019 -281 * 801 265 55 13 chr1 173499101 173499339 -108694325 + MIR SINE MIR 2 249 -13 358 343 15 7 chr1 173499430 173499567 -108694097 + MIR SINE MIR 2 139 -123 284 289 81 34 chr1 173501068 173501217 -108692447 - MIR3 SINE MIR -23 185 30 1567 240 26 23 chr1 173503968 173504352 -108689312 + LTR31 LTR ERV1 117 501 -118 186 337 24 0 chr1 173505897 173505980 -108687684 + MIR3 SINE MIR 106 190 -18 2405 68 3 0 chr1 173506177 173506471 -108687193 - AluY SINE Alu -16 295 1 32 0 0 0 chr1 173506857 173506889 -108686775 + AT_rich Low_complexity Low_complexity 1 32 0 1681 61 0 0 chr1 173506896 173507094 -108686570 - L1PA5 LINE L1 -6 6148 5951 283 106 0 43 chr1 173507214 173507261 -108686403 - L2 LINE L2 -18 3295 3251 199 216 0 0 chr1 173507447 173507484 -108686180 + L2 LINE L2 3254 3290 -23 519 260 19 19 chr1 173507719 173507873 -108685791 + MIR3 SINE MIR 47 200 -8 186 320 173 0 chr1 173508369 173508444 -108685220 + L2 LINE L2 3185 3272 0 515 270 90 36 chr1 173508620 173508842 -108684822 + L2 LINE L2 3047 3280 -33 290 308 126 6 chr1 173508887 173509046 -108684618 - MIR SINE MIR -75 187 10 2038 118 4 0 chr1 173509240 173509552 -108684112 + AluSx SINE Alu 1 313 0 269 258 113 73 chr1 173510094 173510218 -108683446 - L2 LINE L2 -29 3243 3115 286 317 33 0 chr1 173510376 173510496 -108683168 - L1MEd LINE L1 -5470 649 526 490 333 25 20 chr1 173511312 173511516 -108682148 + MIR SINE MIR 2 206 -56 432 37 0 0 chr1 173511961 173512015 -108681649 + (TG)n Simple_repeat Simple_repeat 2 55 0 399 41 0 0 chr1 173512014 173512063 -108681601 + (TA)n Simple_repeat Simple_repeat 1 49 0 * 1858 180 40 67 chr1 173512405 173512604 -108681060 + MSTD LTR MaLR 3 187 -209 1605 186 50 7 chr1 173512604 173512884 -108680780 + AluJb SINE Alu 1 292 -20 1858 180 40 67 chr1 173512884 173513085 -108680579 + MSTD LTR MaLR 187 392 -4 387 255 59 10 chr1 173513129 173513231 -108680433 + MIR SINE MIR 26 132 -130 1760 185 0 0 chr1 173513250 173513526 -108680138 + AluJo SINE Alu 1 276 -36 246 62 0 0 chr1 173513536 173513568 -108680096 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2112 248 74 18 chr1 173514328 173516378 -108677286 + L1ME3 LINE L1 3524 5939 -231 1797 197 85 79 chr1 173516827 173517344 -108676320 + MLT2B1 LTR ERVL 1 520 0 21 0 0 0 chr1 173520757 173520778 -108672886 + AT_rich Low_complexity Low_complexity 1 21 0 208 283 177 26 chr1 173520964 173521077 -108672587 - L2 LINE L2 -1 3271 3142 21902 46 8 0 chr1 173522484 173526619 -108667045 - L1P LINE L1 -1289 4857 694 249 0 0 0 chr1 173526617 173526645 -108667019 + L1P3 LINE L1 963 990 -5471 * 13779 99 1 5 chr1 173526832 173528791 -108664873 - L1PA8 LINE L1 -982 5164 3212 7049 78 10 0 chr1 173528791 173529781 -108663883 + L1PA8 LINE L1 5174 6172 0 621 230 16 0 chr1 173531756 173531882 -108661782 + MER63A DNA MER1_type 48 175 -35 697 202 0 10 chr1 173533253 173533404 -108660260 + L1MB7 LINE L1 5838 5982 -201 774 245 34 20 chr1 173533526 173533730 -108659934 + L1MB7 LINE L1 5968 6174 -10 198 342 43 34 chr1 173533981 173534098 -108659566 - L2 LINE L2 -8 3264 3147 251 217 14 29 chr1 173534305 173534374 -108659290 + (TATG)n Simple_repeat Simple_repeat 3 70 0 636 256 6 17 chr1 173535201 173535377 -108658287 + MER104 DNA Tc2 4 177 -3 1649 176 191 8 chr1 173536124 173536516 -108657148 + MLT2C2 LTR ERVL 1 464 0 342 0 0 0 chr1 173536588 173536626 -108657038 + (TG)n Simple_repeat Simple_repeat 2 39 0 618 275 22 6 chr1 173536677 173536859 -108656805 - MIR SINE MIR -1 261 77 363 367 18 39 chr1 173537945 173538174 -108655490 + MIR SINE MIR 17 240 -22 475 267 24 24 chr1 173539794 173539959 -108653705 + MLT1J LTR MaLR 340 504 -7 650 266 46 0 chr1 173542559 173542732 -108650932 + MER63A DNA MER1_type 11 191 -19 771 163 0 6 chr1 173544121 173544261 -108649403 + L1MB8 LINE L1 5838 5972 -206 975 196 24 19 chr1 173544393 173544602 -108649062 + L1MB8 LINE L1 5968 6177 -1 239 120 0 20 chr1 173545175 173545225 -108648439 + (TG)n Simple_repeat Simple_repeat 2 50 0 809 230 96 98 chr1 173545987 173546447 -108647217 - LTR37B LTR ERV1 0 468 10 615 249 17 17 chr1 173546938 173547115 -108646549 + MER104 DNA Tc2 4 180 0 1370 169 152 0 chr1 173547882 173548184 -108645480 + MLT2C2 LTR ERVL 1 348 -116 232 214 101 34 chr1 173548857 173548946 -108644718 + MLT2C2 LTR ERVL 370 464 0 680 280 11 0 chr1 173549080 173549266 -108644398 - MIR SINE MIR -1 261 74 357 24 0 0 chr1 173549364 173549406 -108644258 + (CA)n Simple_repeat Simple_repeat 1 42 0 512 339 9 39 chr1 173550350 173550583 -108643081 + MIR SINE MIR 15 240 -22 456 318 40 47 chr1 173552083 173552360 -108641304 + MLT1J LTR MaLR 237 511 0 3290 62 2 0 chr1 173552403 173552803 -108640861 + L1PA7 LINE L1 5754 6154 0 386 277 149 0 chr1 173555084 173555225 -108638439 + MER63A DNA MER1_type 11 172 -38 206 312 58 36 chr1 173556203 173556341 -108637323 + MIR SINE MIR 111 251 -11 734 160 7 6 chr1 173556622 173556761 -108636903 + L1MB8 LINE L1 5838 5972 -206 1068 187 19 19 chr1 173556893 173557102 -108636562 + L1MB8 LINE L1 5968 6176 -2 221 171 0 24 chr1 173557668 173557709 -108635955 + (TG)n Simple_repeat Simple_repeat 1 40 0 784 216 128 28 chr1 173558472 173558754 -108634910 - LTR37B LTR ERV1 -5 463 154 657 250 6 17 chr1 173559409 173559585 -108634079 + MER104 DNA Tc2 4 177 -3 1925 208 65 22 chr1 173560755 173561155 -108632509 + MER47B DNA MER2_type 2 418 0 244 347 0 0 chr1 173562667 173562739 -108630925 + L2 LINE L2 3184 3255 -17 385 294 8 34 chr1 173562746 173562865 -108630799 + L2 LINE L2 3188 3303 -10 189 175 0 0 chr1 173562919 173562959 -108630705 + GA-rich Low_complexity Low_complexity 4 43 0 833 154 41 0 chr1 173564073 173564196 -108629468 - FLAM_A SINE Alu -5 128 1 315 265 46 7 chr1 173564359 173564510 -108629154 - L1M4 LINE L1 -2155 3991 3835 575 223 9 59 chr1 173565107 173565349 -108628315 - MLT1H LTR MaLR -215 334 45 26 0 0 0 chr1 173565510 173565536 -108628128 + AT_rich Low_complexity Low_complexity 1 26 0 239 282 48 78 chr1 173565864 173565967 -108627697 + LTR16C LTR ERVL 72 171 -320 2482 221 66 50 chr1 173565972 173566927 -108626737 - L1MDa LINE L1 -4561 1979 1010 401 291 57 34 chr1 173567851 173568026 -108625638 - HAL1b LINE L1 -1121 227 49 367 361 49 31 chr1 173568868 173569195 -108624469 + L1M4 LINE L1 3236 3568 -2578 226 276 69 0 chr1 173570895 173570953 -108622711 + L2 LINE L2 3147 3208 -64 188 337 33 0 chr1 173571165 173571257 -108622407 + L2 LINE L2 3200 3294 -19 209 239 174 11 chr1 173571598 173571690 -108621974 - MIR SINE MIR -64 144 38 26 0 0 0 chr1 173572023 173572049 -108621615 + AT_rich Low_complexity Low_complexity 1 26 0 582 28 0 0 chr1 173573585 173573657 -108620007 + (TG)n Simple_repeat Simple_repeat 1 72 0 11944 126 26 14 chr1 173573829 173575261 -108618403 + Tigger1 DNA MER2_type 2 1481 -937 2356 91 10 0 chr1 173575261 173575569 -108618095 - AluY SINE Alu 0 311 1 11944 126 26 14 chr1 173575569 173576518 -108617146 + Tigger1 DNA MER2_type 1481 2418 0 727 218 173 1 chr1 173576706 173576902 -108616762 + MIR SINE MIR 1 225 -37 27 0 0 0 chr1 173577735 173577762 -108615902 + AT_rich Low_complexity Low_complexity 1 27 0 215 245 0 0 chr1 173578214 173578267 -108615397 - L2 LINE L2 0 3313 3261 1603 214 25 57 chr1 173578276 173578335 -108615329 - MSTD LTR MaLR -2 394 335 1640 144 0 4 chr1 173578335 173578585 -108615079 + L1PA15 LINE L1 5915 6163 -2 1603 214 25 57 chr1 173578585 173578932 -108614732 - MSTD LTR MaLR -61 335 1 2040 255 47 19 chr1 173579257 173579849 -108613815 + L1ME3A LINE L1 5558 6166 -4 832 200 44 0 chr1 173579982 173580162 -108613502 + MER53 DNA DNA 2 189 0 247 255 88 82 chr1 173580448 173580766 -108612898 - L1MDa LINE L1 -4918 1622 1303 1829 148 0 43 chr1 173581142 173581447 -108612217 - AluSx SINE Alu -20 292 1 4519 142 19 22 chr1 173581887 173582536 -108611128 - L1MA3 LINE L1 -340 7384 6735 2043 151 3 0 chr1 173582536 173582847 -108610817 + AluSx SINE Alu 1 312 0 4519 142 19 22 chr1 173582847 173583449 -108610215 - L1MA3 LINE L1 -989 6735 5823 6062 148 14 2 chr1 173583449 173584998 -108608666 - L1PA13 LINE L1 0 6163 4598 3189 187 10 35 chr1 173584999 173585706 -108607958 - L1PA13 LINE L1 -2385 3761 3073 808 162 7 0 chr1 173585711 173585859 -108607805 - L1MA3 LINE L1 -1437 6128 5980 * 15738 162 10 19 chr1 173585856 173588473 -108605191 - L1MA3 LINE L1 -4962 2603 11 330 194 0 0 chr1 173589684 173589756 -108603908 + GA-rich Low_complexity Low_complexity 3 74 0 265 225 22 0 chr1 173590234 173590323 -108603341 + GA-rich Low_complexity Low_complexity 4 94 0 1735 101 9 0 chr1 173592340 173592567 -108601097 - AluSg/x SINE Alu -18 294 66 190 280 112 24 chr1 173593510 173593635 -108600029 + L2 LINE L2 3136 3271 -1 413 51 34 0 chr1 173595594 173595653 -108598011 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 1372 98 47 5 chr1 173596958 173597151 -108596513 - AluSc SINE Alu -23 286 86 1646 238 46 70 chr1 173597416 173597963 -108595701 + MLT1H1 LTR MaLR 10 543 -12 213 361 83 0 chr1 173598201 173598273 -108595391 + L2 LINE L2 3196 3273 -40 2035 77 12 187 chr1 173598292 173598709 -108594955 + LTR14A LTR ERVK 1 344 0 9930 38 26 0 chr1 173599967 173601891 -108591773 - L1PA4 LINE L1 -2 6153 4183 1635 113 0 17 chr1 173602302 173602541 -108591123 + L1PA12 LINE L1 5647 5881 -287 273 228 30 79 chr1 173602669 173602770 -108590894 - MIR SINE MIR -111 151 56 366 132 0 0 chr1 173602820 173602896 -108590768 + (CA)n Simple_repeat Simple_repeat 1 76 0 205 301 0 14 chr1 173605458 173605531 -108588133 + (CA)n Simple_repeat Simple_repeat 1 72 0 202 182 18 18 chr1 173605533 173605588 -108588076 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 531 319 48 4 chr1 173607021 173607250 -108586414 - MIR SINE MIR -19 243 5 213 121 0 0 chr1 173607261 173607294 -108586370 + (CA)n Simple_repeat Simple_repeat 2 34 0 2731 175 45 22 chr1 173608705 173609258 -108584406 + L1ME1 LINE L1 5266 5831 -481 * 3187 195 23 2 chr1 173609254 173609896 -108583768 - L1 LINE L1 -2265 3881 3226 * 3576 187 47 30 chr1 173609891 173610573 -108583091 + L1 LINE L1 3901 4631 -1515 605 95 0 0 chr1 173610573 173610657 -108583007 + MLT2A2 LTR ERVL 370 453 0 3576 187 47 30 chr1 173610657 173610880 -108582784 + L1 LINE L1 4631 4849 -1297 367 216 20 20 chr1 173610943 173611045 -108582619 + L1ME1 LINE L1 6061 6162 -4 222 208 0 0 chr1 173611090 173611143 -108582521 + (TA)n Simple_repeat Simple_repeat 1 53 0 27 29 0 0 chr1 173615973 173616007 -108577657 + AT_rich Low_complexity Low_complexity 1 34 0 4514 206 8 50 chr1 173616098 173617246 -108576418 - L1MB2 LINE L1 -12 6395 5200 2129 107 0 4 chr1 173617246 173617550 -108576114 - AluSc SINE Alu 0 303 1 4514 206 8 50 chr1 173617550 173617737 -108575927 - L1MB2 LINE L1 -1207 5200 5007 793 223 0 0 chr1 173617737 173617867 -108575797 + FLAM_A SINE Alu 1 130 -3 4514 206 8 50 chr1 173617867 173618016 -108575648 - L1MB2 LINE L1 -1400 5007 4987 782 203 0 0 chr1 173618016 173618144 -108575520 - FLAM_A SINE Alu -3 130 3 4514 206 8 50 chr1 173618144 173618219 -108575445 - L1MB2 LINE L1 -1420 4987 4910 3950 235 80 44 chr1 173618222 173619642 -108574022 - L1MB2 LINE L1 -2334 4048 2578 1166 237 47 40 chr1 173619633 173620188 -108573476 - L1MB2 LINE L1 -4661 1652 779 * 23 33 0 0 chr1 173620855 173620885 -108572779 + AT_rich Low_complexity Low_complexity 1 30 0 252 324 0 0 chr1 173621463 173621565 -108572099 + L1ME1 LINE L1 6060 6161 -5 957 235 53 56 chr1 173624099 173624439 -108569225 + MER58B DNA MER1_type 3 341 0 348 298 60 85 chr1 173624447 173624695 -108568969 + MIR SINE MIR 10 251 -11 482 254 15 15 chr1 173625673 173625807 -108567857 - MER94 DNA DNA 0 134 1 1305 198 146 4 chr1 173625943 173626196 -108567468 - AluJb SINE Alu -13 289 1 323 254 19 154 chr1 173627290 173627436 -108566228 + L1ME LINE L1 5263 5427 -694 1987 117 53 3 chr1 173627436 173627719 -108565945 + AluSg SINE Alu 1 297 -13 323 254 19 154 chr1 173627719 173628104 -108565560 + L1ME LINE L1 5427 5722 -399 306 270 151 67 chr1 173628236 173628581 -108565083 + L1ME LINE L1 5400 5773 -348 45 108 0 0 chr1 173628900 173629085 -108564579 + AT_rich Low_complexity Low_complexity 1 185 0 23 0 0 0 chr1 173629201 173629224 -108564440 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 173629363 173629386 -108564278 + AT_rich Low_complexity Low_complexity 1 23 0 463 217 105 0 chr1 173630086 173630229 -108563435 + MIR SINE MIR 102 259 -3 823 311 57 22 chr1 173630616 173630934 -108562730 + MER93a LTR ERV1 74 402 0 285 140 0 0 chr1 173631756 173631813 -108561851 + (TG)n Simple_repeat Simple_repeat 2 58 0 1146 269 191 21 chr1 173632075 173632745 -108560919 + LTR50 LTR ERVL 8 791 -4 406 325 75 16 chr1 173634018 173634206 -108559458 - MIR3 SINE MIR -7 201 3 431 284 83 28 chr1 173635292 173635944 -108557720 + L1MC4a LINE L1 5281 5735 -528 2033 159 0 0 chr1 173636068 173636376 -108557288 + AluJb SINE Alu 1 308 -4 2403 273 79 67 chr1 173636759 173637975 -108555689 - L2 LINE L2 0 3313 2081 393 299 54 43 chr1 173638420 173638604 -108555060 - L1ME LINE L1 -578 5543 5358 459 304 28 69 chr1 173639049 173639266 -108554398 + MER115 DNA AcHobo 248 455 -238 241 327 67 19 chr1 173639429 173639533 -108554131 - L2 LINE L2 0 3313 3205 338 285 129 20 chr1 173639540 173639852 -108553812 + L2 LINE L2 2721 3064 -208 215 309 89 41 chr1 173639897 173640020 -108553644 + L2 LINE L2 3172 3300 -13 212 329 14 75 chr1 173640680 173640826 -108552838 - L2 LINE L2 -218 3054 2918 2175 142 0 0 chr1 173641106 173641416 -108552248 - AluSx SINE Alu -2 310 1 214 264 8 50 chr1 173641966 173642087 -108551577 + GA-rich Low_complexity Low_complexity 2 117 0 1055 169 34 68 chr1 173643407 173643447 -108550217 - THE1C LTR MaLR 0 375 335 2882 7 0 0 chr1 173643447 173643754 -108549910 + AluYb8 SINE Alu 1 307 -11 1055 169 34 68 chr1 173643754 173643949 -108549715 - THE1C LTR MaLR -40 335 148 2092 111 18 0 chr1 173643994 173644311 -108549353 - AluSq SINE Alu 0 322 1 207 0 0 0 chr1 173644700 173644723 -108548941 + (CA)n Simple_repeat Simple_repeat 1 23 0 2223 120 3 0 chr1 173644803 173645111 -108548553 + AluSq SINE Alu 1 309 -4 263 303 49 56 chr1 173645695 173645837 -108547827 - MIR SINE MIR -68 140 5 228 250 21 0 chr1 173647250 173647298 -108546366 - MER81 DNA DNA -36 78 30 427 327 74 23 chr1 173647468 173647685 -108545979 + MIR SINE MIR 2 229 -33 2411 248 3 34 chr1 173649240 173649889 -108543775 - L1ME1 LINE L1 -260 5906 5278 245 192 0 0 chr1 173649895 173649947 -108543717 + L1MC4 LINE L1 6649 6700 -1342 260 155 0 35 chr1 173649952 173650010 -108543654 + (TATG)n Simple_repeat Simple_repeat 3 58 0 885 228 34 4 chr1 173650010 173650243 -108543421 - L1ME1 LINE L1 -874 5272 5033 1747 121 96 3 chr1 173650253 173650535 -108543129 - Tigger1 DNA MER2_type 0 2418 2111 821 126 0 0 chr1 173650546 173650657 -108543007 - AluSg/x SINE Alu -11 299 189 13456 126 13 13 chr1 173650663 173652722 -108540942 - Tigger1 DNA MER2_type -332 2086 27 234 0 0 0 chr1 173652763 173652789 -108540875 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1767 215 126 53 chr1 173652812 173653423 -108540241 - L1ME1 LINE L1 -1205 4941 4265 2167 138 3 0 chr1 173653423 173653734 -108539930 - AluSx SINE Alu 0 312 1 1767 215 126 53 chr1 173653734 173653862 -108539802 - L1ME1 LINE L1 -1881 4265 4148 2624 249 36 11 chr1 173653864 173654685 -108538979 - L1ME1 LINE L1 -2154 3992 3151 1494 159 123 7 chr1 173654819 173655096 -108538568 - AluSg SINE Alu -1 309 1 270 136 0 0 chr1 173655101 173655145 -108538519 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 1020 70 13 13 chr1 173655153 173655309 -108538355 + (TTTC)n Simple_repeat Simple_repeat 2 157 0 253 158 0 0 chr1 173655323 173655361 -108538303 - L1M3f LINE L1 -5277 51 14 873 224 71 80 chr1 173655364 173655690 -108537974 + MLT2C2 LTR ERVL 102 424 -40 219 188 0 0 chr1 173655725 173655773 -108537891 + (CATA)n Simple_repeat Simple_repeat 2 49 0 343 122 0 0 chr1 173655776 173655825 -108537839 + MLT2D LTR ERVL 366 414 0 833 369 25 5 chr1 173655825 173656229 -108537435 + HERV16 LTR ERVL 2408 2819 -2177 298 242 23 23 chr1 173656230 173656362 -108537302 - L1M4 LINE L1 -2795 3351 3220 320 224 66 0 chr1 173656366 173656442 -108537222 + L1MCb LINE L1 732 812 -5233 2717 211 229 29 chr1 173656445 173657533 -108536131 + L1MCb LINE L1 1060 2364 -4200 445 266 0 9 chr1 173657642 173657755 -108535909 + LTR16A1 LTR ERVL 346 457 0 491 331 93 17 chr1 173657789 173658142 -108535522 + HERV16 LTR ERVL 43 422 -4574 939 343 28 40 chr1 173658671 173659217 -108534447 + HERV16 LTR ERVL 1045 1583 -3413 2119 162 25 22 chr1 173659236 173659601 -108534063 - MER47A DNA MER2_type 0 366 1 1509 308 88 35 chr1 173659610 173659996 -108533668 + HERV16 LTR ERVL 1678 2117 -2879 2415 78 0 0 chr1 173659996 173660289 -108533375 + AluY SINE Alu 11 303 -8 1509 308 88 35 chr1 173660289 173660580 -108533084 + HERV16 LTR ERVL 2117 2391 -2605 6551 138 5 18 chr1 173660664 173661685 -108531979 - L1M3f LINE L1 -4118 1210 203 206 300 33 0 chr1 173661794 173661854 -108531810 - MIR SINE MIR -185 77 16 29 0 0 0 chr1 173661894 173661923 -108531741 + AT_rich Low_complexity Low_complexity 1 29 0 691 313 65 27 chr1 173662043 173662238 -108531426 + L1MCb LINE L1 3331 3517 -3047 2848 10 0 0 chr1 173662238 173662545 -108531119 + AluYa5 SINE Alu 1 307 -4 691 313 65 27 chr1 173662545 173662761 -108530903 + L1MCb LINE L1 3517 3758 -2806 538 167 22 0 chr1 173662847 173662937 -108530727 - MER92B LTR ERV1 -33 603 512 357 311 11 33 chr1 173663323 173663503 -108530161 + LTR16C LTR ERVL 316 491 0 288 235 80 49 chr1 173663516 173663678 -108529986 - Charlie2 DNA MER1_type -44 2818 2652 953 243 81 49 chr1 173663678 173664185 -108529479 - L1MC5 LINE L1 -60 7901 7379 248 274 16 0 chr1 173664321 173664383 -108529281 + LTR16A1 LTR ERVL 168 230 -227 406 316 132 21 chr1 173664567 173665197 -108528467 - L1M4 LINE L1 -1112 5034 4335 339 164 0 0 chr1 173666808 173666869 -108526795 + (TA)n Simple_repeat Simple_repeat 2 62 0 1164 77 0 7 chr1 173666870 173667025 -108526639 + AluYa5 SINE Alu 158 311 0 213 222 0 0 chr1 173667029 173667074 -108526590 + (CA)n Simple_repeat Simple_repeat 2 46 0 182 282 49 78 chr1 173667869 173668011 -108525653 - MER5A DNA MER1_type -1 188 51 1069 184 35 10 chr1 173668303 173668504 -108525160 - AluJb SINE Alu 0 312 107 946 221 20 27 chr1 173670793 173671087 -108522577 - L1M4 LINE L1 -1073 5884 5593 1370 252 108 20 chr1 173671090 173671728 -108521936 - L1M4 LINE L1 -4746 2213 1520 * 37460 38 3 0 chr1 173671725 173677835 -108515829 + L1PA4 LINE L1 25 6155 0 6347 249 28 13 chr1 173677835 173679342 -108514322 - L1M4 LINE L1 -5320 1539 11 22 35 0 0 chr1 173679505 173679534 -108514130 + AT_rich Low_complexity Low_complexity 1 29 0 1631 52 5 0 chr1 173679534 173679728 -108513936 - L1PA5 LINE L1 -2 6152 5958 1312 103 73 86 chr1 173679920 173680153 -108513511 + MER30 DNA MER1_type 1 230 0 273 29 0 0 chr1 173680345 173680379 -108513285 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2922 6 10 3 chr1 173680379 173680691 -108512973 - L1PA2 LINE L1 -16 6139 5826 702 144 13 13 chr1 173681194 173681347 -108512317 + GA-rich Low_complexity Low_complexity 3 155 0 224 281 0 0 chr1 173681368 173681425 -108512239 + GA-rich Low_complexity Low_complexity 2 58 0 232 254 16 16 chr1 173682705 173682768 -108510896 + GA-rich Low_complexity Low_complexity 2 64 0 185 267 67 0 chr1 173683123 173683168 -108510496 - L2 LINE L2 -1 3312 3265 293 322 130 0 chr1 173683678 173683793 -108509871 - L2 LINE L2 -5 3267 3138 288 311 165 10 chr1 173685647 173685750 -108507914 - L2 LINE L2 -11 3261 3143 579 0 0 0 chr1 173686680 173686748 -108506916 + L1PA2 LINE L1 6088 6155 0 823 115 51 38 chr1 173688119 173688276 -108505388 + L1MA8 LINE L1 6131 6289 -2 22 70 0 0 chr1 173688464 173688507 -108505157 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr1 173688986 173689012 -108504652 + AT_rich Low_complexity Low_complexity 1 26 0 325 300 120 0 chr1 173689040 173689190 -108504474 + HAL1 LINE L1 2266 2433 -74 203 266 13 63 chr1 173689494 173689573 -108504091 + MIR SINE MIR 110 184 -78 4331 209 112 62 chr1 173689668 173690992 -108502672 - L1MC3 LINE L1 0 7785 6396 1466 164 10 65 chr1 173691200 173691493 -108502171 + AluJo SINE Alu 12 288 -24 255 170 0 0 chr1 173692417 173692464 -108501200 + (CA)n Simple_repeat Simple_repeat 2 48 0 821 293 45 0 chr1 173693138 173693384 -108500280 - MIR SINE MIR -3 259 3 199 336 67 34 chr1 173693488 173693607 -108500057 + MIR SINE MIR 25 147 -61 5571 52 0 0 chr1 173693763 173694401 -108499263 - L1PA5 LINE L1 -1 6153 5516 316 358 39 29 chr1 173694401 173694608 -108499056 + L3 LINE CR1 1367 1575 -2 283 233 82 101 chr1 173694748 173694865 -108498799 - MER5A DNA MER1_type 0 189 74 1953 135 0 23 chr1 173694865 173695195 -108498469 - AluSc SINE Alu 0 309 1 283 233 82 101 chr1 173695195 173695236 -108498428 - MER5A DNA MER1_type -115 74 34 203 292 175 19 chr1 173695312 173695466 -108498198 + MIR SINE MIR 45 222 -40 289 244 151 12 chr1 173696470 173696556 -108497108 - MIR SINE MIR -63 145 48 200 286 0 0 chr1 173697587 173697636 -108496028 + L2 LINE L2 2690 2738 -576 182 280 144 25 chr1 173697948 173698066 -108495598 - MIR SINE MIR -82 180 49 324 294 132 25 chr1 173698365 173698569 -108495095 + L2 LINE L2 2883 3108 -164 1972 139 4 0 chr1 173698701 173698982 -108494682 - AluSx SINE Alu -18 294 13 330 218 39 0 chr1 173699982 173700060 -108493604 - L2 LINE L2 0 3313 3233 212 391 89 23 chr1 173700195 173700758 -108492906 - L2 LINE L2 -1747 1567 968 201 265 221 15 chr1 173700837 173700973 -108492691 + MIR3 SINE MIR 35 198 -10 4865 105 57 114 chr1 173704581 173705789 -108487875 + Tigger3b DNA MER2_type 91 1230 -2 4027 271 223 37 chr1 173706671 173707248 -108486416 - L2 LINE L2 0 3313 2845 1849 111 38 7 chr1 173707248 173707536 -108486128 - L1MA5 LINE L1 -2 6298 6002 4027 271 223 37 chr1 173707536 173709718 -108483946 - L2 LINE L2 -468 2845 39 200 227 45 0 chr1 173709734 173709778 -108483886 + C-rich Low_complexity Low_complexity 6 51 0 236 250 15 15 chr1 173710171 173710239 -108483425 - MER91B DNA MER1_type -106 84 17 31 76 0 0 chr1 173710408 173710474 -108483190 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr1 173711074 173711102 -108482562 + AT_rich Low_complexity Low_complexity 1 28 0 492 330 68 0 chr1 173711917 173712093 -108481571 - MIR SINE MIR -28 234 47 556 272 12 12 chr1 173712691 173712853 -108480811 - LTR41 LTR ERVL -610 163 2 216 111 0 0 chr1 173712874 173712910 -108480754 + (CA)n Simple_repeat Simple_repeat 1 36 0 208 343 48 34 chr1 173715154 173715300 -108478364 + MIR SINE MIR 87 234 -28 414 108 0 0 chr1 173715312 173715377 -108478287 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 345 255 111 38 chr1 173715825 173716060 -108477604 + L1MDb LINE L1 1404 1655 -4992 * 7927 31 0 2 chr1 173716047 173717068 -108476596 + L1P2 LINE L1 4450 5468 -687 7975 31 2 0 chr1 173717168 173718313 -108475351 + L1PA4 LINE L1 5014 6155 0 266 306 10 0 chr1 173718342 173718440 -108475224 + L1MDb LINE L1 1579 1677 -4865 2867 80 13 42 chr1 173718952 173719338 -108474326 + THE1C LTR MaLR 1 375 0 301 229 36 36 chr1 173719757 173719840 -108473824 + MER46C DNA MER2_type 248 330 -8 706 204 81 91 chr1 173720685 173720906 -108472758 + MER20 DNA MER1_type 1 219 0 415 294 67 27 chr1 173721306 173721492 -108472172 - MIR SINE MIR -56 206 16 403 258 39 93 chr1 173721636 173721818 -108471846 + L2 LINE L2 3142 3313 0 448 284 105 32 chr1 173722035 173722225 -108471439 + MIR SINE MIR 32 235 -27 413 345 126 15 chr1 173722349 173722674 -108470990 - L3 LINE CR1 -609 968 608 384 272 0 0 chr1 173722965 173723057 -108470607 + L2 LINE L2 3222 3313 0 222 211 18 0 chr1 173724695 173724752 -108468912 + (CAGA)n Simple_repeat Simple_repeat 1 58 0 249 313 30 0 chr1 173725537 173725636 -108468028 + MIR SINE MIR 90 191 -71 227 219 16 16 chr1 173725649 173725713 -108467951 - L1MC4 LINE L1 -1337 6705 6642 862 227 22 16 chr1 173725736 173725921 -108467743 - MER5A DNA MER1_type 0 189 4 180 290 48 0 chr1 173726043 173726105 -108467559 + MIR3 SINE MIR 116 180 -28 2318 105 0 7 chr1 173726549 173726853 -108466811 - AluSx SINE Alu -10 302 1 4092 173 22 24 chr1 173727179 173727938 -108465726 + L1MB3 LINE L1 5423 6180 -3 223 297 58 100 chr1 173728386 173728645 -108465019 - L2 LINE L2 -338 2976 2729 311 273 96 102 chr1 173729062 173729406 -108464258 - L1M2a LINE L1 -5705 1463 1122 205 293 163 27 chr1 173732461 173732608 -108461056 + MIR SINE MIR 19 185 -77 2281 38 4 0 chr1 173732608 173732871 -108460793 + L1PA4 LINE L1 5888 6151 -4 400 264 136 7 chr1 173733177 173733319 -108460345 + Charlie8 DNA MER1_type 78 239 -2178 1565 134 12 12 chr1 173733319 173733565 -108460099 + MSTB1 LTR MaLR 1 246 -186 1031 172 9 42 chr1 173733665 173733880 -108459784 + MSTB1 LTR MaLR 225 432 0 316 267 61 76 chr1 173734090 173734221 -108459443 + MIR SINE MIR 18 146 -116 210 240 20 0 chr1 173734221 173734271 -108459393 + GA-rich Low_complexity Low_complexity 1 51 0 420 102 0 0 chr1 173734312 173734371 -108459293 - MSTB1 LTR MaLR -373 59 1 370 273 136 7 chr1 173734371 173734513 -108459151 - Charlie8 DNA MER1_type -2167 250 89 218 151 38 38 chr1 173734763 173734816 -108458848 + MIR SINE MIR 165 217 -45 6057 108 13 3 chr1 173734829 173735773 -108457891 + L1PB1 LINE L1 5186 6138 -13 325 327 63 76 chr1 173735996 173736631 -108457033 + L2 LINE L2 2549 3165 -107 395 329 48 12 chr1 173737467 173737634 -108456030 - MIR SINE MIR -62 200 28 1639 201 0 19 chr1 173738236 173738554 -108455110 + AluJo SINE Alu 1 312 0 186 333 0 20 chr1 173739384 173739435 -108454229 + L2 LINE L2 3136 3185 -87 2162 103 4 4 chr1 173739594 173739875 -108453789 + AluSp SINE Alu 17 297 -16 29 0 0 0 chr1 173740014 173740043 -108453621 + AT_rich Low_complexity Low_complexity 1 29 0 528 93 0 0 chr1 173740202 173740277 -108453387 + (GA)n Simple_repeat Simple_repeat 2 76 0 4323 179 45 14 chr1 173740445 173741620 -108452044 + L1MB8 LINE L1 4965 6173 -5 234 275 0 0 chr1 173741620 173741700 -108451964 + (TA)n Simple_repeat Simple_repeat 1 80 0 250 346 150 33 chr1 173743383 173743536 -108450128 - L2 LINE L2 -44 3228 3058 2219 224 122 61 chr1 173744240 173744947 -108448717 + MER21B LTR ERV1 1 750 -113 458 169 34 34 chr1 173745010 173745128 -108448536 - MIR SINE MIR -68 194 77 255 355 87 51 chr1 173746051 173746406 -108447258 - L2 LINE L2 -723 2591 2224 * 342 314 149 16 chr1 173746398 173746646 -108447018 - L2 LINE L2 -2 3311 3031 350 260 87 41 chr1 173746718 173746889 -108446775 + MIR SINE MIR 15 186 -66 209 350 144 0 chr1 173749590 173749687 -108443977 + L2 LINE L2 3124 3234 -38 226 346 24 34 chr1 173750522 173750727 -108442937 - L2 LINE L2 -1148 2166 1964 21 57 0 0 chr1 173750986 173751021 -108442643 + AT_rich Low_complexity Low_complexity 1 35 0 2212 117 0 0 chr1 173751181 173751480 -108442184 + AluSg SINE Alu 5 303 -7 266 288 151 14 chr1 173751613 173751759 -108441905 + MIR SINE MIR 79 244 -18 330 273 103 62 chr1 173752785 173753876 -108439788 + L1ME3 LINE L1 4339 5476 -688 563 349 40 0 chr1 173753976 173754303 -108439361 + L1ME3 LINE L1 5621 5960 -202 1825 219 69 22 chr1 173756568 173757019 -108436645 - L1MC4 LINE L1 -300 7742 7261 1932 145 7 0 chr1 173757019 173757308 -108436356 - AluSx SINE Alu -21 291 1 1825 219 69 22 chr1 173757308 173757395 -108436269 - L1MC4 LINE L1 -781 7261 7179 562 230 9 0 chr1 173757444 173757557 -108436107 - ERVL LTR ERVL -4847 917 804 2163 119 3 13 chr1 173757927 173758239 -108435425 - AluSq SINE Alu -4 309 1 1763 188 5 62 chr1 173758284 173758529 -108435135 + MLT2D LTR ERVL 1 218 -196 4628 95 40 3 chr1 173758529 173759153 -108434511 + L1PA13 LINE L1 5515 6161 -2 1763 188 5 62 chr1 173759153 173759295 -108434369 + MLT2D LTR ERVL 218 366 -48 3108 276 96 44 chr1 173759336 173759896 -108433768 + HERVL-D LTR ERVL 22 552 -5102 2159 120 0 22 chr1 173759896 173760213 -108433451 + AluSx SINE Alu 1 310 -2 3108 276 96 44 chr1 173760213 173760946 -108432718 + HERVL-D LTR ERVL 552 1382 -4272 2239 109 7 0 chr1 173760960 173761262 -108432402 + AluY SINE Alu 1 304 -7 1444 56 6 0 chr1 173761264 173761444 -108432220 - L1P LINE L1 -1127 5019 4839 941 209 0 17 chr1 173761444 173761616 -108432048 + MLT1A2 LTR MaLR 206 374 0 991 181 80 0 chr1 173761617 173761816 -108431848 + HERVL-D LTR ERVL 2455 2669 -3095 * 1425 138 22 5 chr1 173761813 173762037 -108431627 - ERVL LTR ERVL -1586 4178 3951 312 282 0 12 chr1 173762347 173762432 -108431232 + (CA)n Simple_repeat Simple_repeat 1 84 0 257 243 0 29 chr1 173762983 173763053 -108430611 + (CTA)n Simple_repeat Simple_repeat 1 68 0 205 293 32 89 chr1 173763061 173763184 -108430480 + L2 LINE L2 2940 3055 -217 28 61 0 0 chr1 173763261 173763310 -108430354 + AT_rich Low_complexity Low_complexity 1 49 0 737 211 0 0 chr1 173763433 173763561 -108430103 + FLAM_C SINE Alu 2 129 -14 1849 160 3 26 chr1 173763645 173763952 -108429712 - AluJb SINE Alu -12 300 1 299 281 0 0 chr1 173764717 173764813 -108428851 - L1MC4 LINE L1 -1333 6709 6614 265 277 21 0 chr1 173764739 173764833 -108428831 + L1MC4 LINE L1 6614 6709 -1333 * 6022 254 73 34 chr1 173765152 173767378 -108426286 - L1MEc LINE L1 -4046 2350 37 333 238 113 48 chr1 173769214 173769382 -108424282 - L2 LINE L2 -34 3279 3101 393 108 8 117 chr1 173769383 173769503 -108424161 - HSMAR1 DNA Mariner -11 1276 1170 7609 109 8 18 chr1 173769620 173770716 -108422948 - HSMAR1 DNA Mariner -202 1085 1 367 321 36 0 chr1 173770721 173770858 -108422806 - L2 LINE L2 -251 3062 2921 857 238 29 9 chr1 173771031 173771241 -108422423 + L2 LINE L2 1735 1948 -1366 608 171 38 0 chr1 173771253 173771358 -108422306 - L1MA9 LINE L1 -22 6290 6182 876 151 54 32 chr1 173771362 173771548 -108422116 - L1MA9 LINE L1 -231 6081 5892 2069 242 135 74 chr1 173771551 173771943 -108421721 + L2 LINE L2 1986 2353 -960 2469 94 0 0 chr1 173771943 173772251 -108421413 + AluSq SINE Alu 1 308 -5 2069 242 135 74 chr1 173772251 173773087 -108420577 + L2 LINE L2 2353 3308 -5 210 118 0 0 chr1 173774409 173774443 -108419221 + (CA)n Simple_repeat Simple_repeat 1 34 0 256 167 37 19 chr1 173774967 173775021 -108418643 + LTR48B LTR ERV1 293 347 -297 511 269 137 6 chr1 173775423 173775605 -108418059 - MIR SINE MIR -44 218 13 407 256 31 39 chr1 173775867 173775996 -108417668 + MIR3 SINE MIR 1 128 -80 458 243 108 0 chr1 173776055 173776166 -108417498 + L2 LINE L2 3150 3272 0 1101 178 99 0 chr1 173776229 173776442 -108417222 - L1MB5 LINE L1 -9 6165 5932 2236 120 3 0 chr1 173777020 173777321 -108416343 + AluSg SINE Alu 1 302 -8 485 342 139 20 chr1 173778798 173779392 -108414272 - L2 LINE L2 0 3313 2648 201 283 83 0 chr1 173779894 173779954 -108413710 - MIR SINE MIR -63 145 81 353 355 30 0 chr1 173780814 173780980 -108412684 - MIR3 SINE MIR -9 199 29 236 241 0 0 chr1 173781701 173781759 -108411905 + (CAG)n Simple_repeat Simple_repeat 2 59 0 325 282 0 34 chr1 173781944 173782292 -108411372 + (CAG)n Simple_repeat Simple_repeat 1 336 0 388 286 0 0 chr1 173782394 173782562 -108411102 + (CAG)n Simple_repeat Simple_repeat 2 169 0 403 285 0 0 chr1 173782574 173782753 -108410911 + (CAG)n Simple_repeat Simple_repeat 2 180 0 206 320 7 7 chr1 173782955 173783102 -108410562 + (CAG)n Simple_repeat Simple_repeat 2 148 0 374 367 14 24 chr1 173784665 173784872 -108408792 + L2 LINE L2 2554 2758 -556 5382 166 48 80 chr1 173784977 173786403 -108407261 - L1MC3 LINE L1 0 8065 6685 1199 228 57 6 chr1 173786396 173786956 -108406708 - L1MC3 LINE L1 -743 5683 5264 * 1871 179 15 6 chr1 173787018 173787359 -108406305 + L1M3f LINE L1 208 551 -4777 486 238 108 4 chr1 173787392 173787656 -108406008 - L1MC3 LINE L1 -3952 2474 2253 4208 154 13 16 chr1 173837884 173838585 -108355079 + L1MB1 LINE L1 5469 6167 -1 336 335 58 58 chr1 173839031 173839291 -108354373 + L2 LINE L2 3009 3268 -4 343 161 18 27 chr1 173839616 173839728 -108353936 + (TG)n Simple_repeat Simple_repeat 1 111 0 190 317 81 32 chr1 173840847 173840970 -108352694 + L2 LINE L2 3167 3295 -18 288 0 0 0 chr1 173841069 173841101 -108352563 + (TG)n Simple_repeat Simple_repeat 2 33 0 238 325 131 31 chr1 173842519 173842710 -108350954 - L2 LINE L2 -407 2907 2698 338 190 51 0 chr1 173842710 173842789 -108350875 - L1MC4 LINE L1 0 8042 7960 266 219 49 0 chr1 173842833 173842915 -108350749 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 180 125 0 0 chr1 173842916 173842948 -108350716 + (T)n Simple_repeat Simple_repeat 1 32 0 3281 34 0 10 chr1 173842949 173843332 -108350332 - L1PA4 LINE L1 -3 6152 5774 8065 194 25 50 chr1 173843357 173845293 -108348371 + L1P3 LINE L1 10 1898 -4563 185 317 33 0 chr1 173845401 173845461 -108348203 - MIR SINE MIR -185 77 16 29 0 0 0 chr1 173845501 173845530 -108348134 + AT_rich Low_complexity Low_complexity 1 29 0 691 313 65 27 chr1 173845650 173845845 -108347819 + L1M4 LINE L1 2913 3099 -3047 2848 10 0 0 chr1 173845845 173846152 -108347512 + AluYa5 SINE Alu 1 307 -4 691 313 65 27 chr1 173846152 173846368 -108347296 + L1M4 LINE L1 3099 3340 -2806 538 167 22 0 chr1 173846454 173846544 -108347120 - MER92B LTR ERV1 -33 603 512 357 311 11 33 chr1 173846929 173847109 -108346555 + LTR16C LTR ERVL 316 491 0 288 235 80 49 chr1 173847122 173847284 -108346380 - Charlie2 DNA MER1_type -44 2818 2652 979 246 81 45 chr1 173847284 173847789 -108345875 - L1MC5 LINE L1 -60 7901 7379 655 285 76 53 chr1 173847891 173848210 -108345454 + LTR16A1 LTR ERVL 153 457 0 491 331 93 17 chr1 173848244 173848597 -108345067 + HERV16 LTR ERVL 43 422 -4574 278 401 0 45 chr1 173849441 173849618 -108344046 + HERV16 LTR ERVL 1513 1681 -4083 2119 162 25 22 chr1 173849648 173850013 -108343651 - MER47A DNA MER2_type 0 366 1 1509 308 88 35 chr1 173850022 173850408 -108343256 + HERV16 LTR ERVL 1678 2117 -2879 2415 78 0 0 chr1 173850408 173850701 -108342963 + AluY SINE Alu 11 303 -8 1509 308 88 35 chr1 173850701 173850992 -108342672 + HERV16 LTR ERVL 2117 2391 -2605 7343 139 4 18 chr1 173851076 173852234 -108341430 - L1M3f LINE L1 -4118 1210 69 207 186 0 23 chr1 173852375 173852418 -108341246 + CT-rich Low_complexity Low_complexity 3 44 0 1538 156 120 7 chr1 173852420 173852695 -108340969 - AluSg SINE Alu -4 306 1 278 132 19 0 chr1 173852700 173852753 -108340911 + CT-rich Low_complexity Low_complexity 4 57 0 259 175 0 0 chr1 173852921 173852961 -108340703 - L1M3f LINE L1 -5275 53 14 873 224 71 80 chr1 173852964 173853290 -108340374 + MLT2C2 LTR ERVL 102 424 -40 219 188 0 0 chr1 173853325 173853373 -108340291 + (CATA)n Simple_repeat Simple_repeat 2 49 0 343 122 0 0 chr1 173853376 173853425 -108340239 + MLT2D LTR ERVL 366 414 0 833 369 25 5 chr1 173853425 173853829 -108339835 + HERV16 LTR ERVL 2408 2819 -2177 298 242 23 23 chr1 173853830 173853962 -108339702 - L1M4 LINE L1 -2795 3351 3220 320 224 66 0 chr1 173853966 173854042 -108339622 + L1MCb LINE L1 732 812 -5233 2320 214 184 36 chr1 173854045 173854942 -108338722 + L1MCb LINE L1 1060 2089 -4475 11427 25 2 12 chr1 173855042 173857005 -108336659 - L1PA3 LINE L1 -152 6003 4061 * 12642 32 25 4 chr1 173856992 173858539 -108335125 + L1PA3 LINE L1 2501 4080 -2066 617 141 10 0 chr1 173858547 173858646 -108335018 - L1MC4 LINE L1 -140 7902 7803 24 32 0 0 chr1 173858959 173858990 -108334674 + AT_rich Low_complexity Low_complexity 1 31 0 305 292 0 78 chr1 173859068 173859222 -108334442 - L2 LINE L2 -999 2315 2174 295 282 121 34 chr1 173860959 173861108 -108332556 - MIR3 SINE MIR -7 201 40 183 363 80 0 chr1 173861430 173861543 -108332121 - L2 LINE L2 -1 3271 3150 2087 119 7 30 chr1 173862211 173862514 -108331150 + AluSx SINE Alu 1 296 -16 630 104 0 0 chr1 173862609 173862705 -108330959 + (TG)n Simple_repeat Simple_repeat 1 96 0 198 330 29 10 chr1 173863176 173863279 -108330385 + L2 LINE L2 3133 3237 -35 1392 154 17 0 chr1 173863722 173863956 -108329708 - L1MA8 LINE L1 -14 6277 6040 410 328 78 11 chr1 173864086 173864266 -108329398 - MIR SINE MIR -8 254 63 294 287 157 9 chr1 173865746 173865861 -108327803 + MIR3 SINE MIR 33 164 -44 264 299 15 15 chr1 173866112 173866179 -108327485 - MIR SINE MIR -164 98 32 206 219 16 0 chr1 173866217 173866281 -108327383 + CT-rich Low_complexity Low_complexity 2 66 0 182 114 0 29 chr1 173866308 173866343 -108327321 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 2535 40 7 3 chr1 173867331 173867631 -108326033 - AluY SINE Alu -6 305 5 253 100 40 0 chr1 173868606 173868656 -108325008 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 428 327 52 33 chr1 173869632 173869843 -108323821 + MIR SINE MIR 48 262 0 4851 213 30 70 chr1 173870030 173870789 -108322875 - MER31-int LTR ERV1 -1067 3869 3194 5909 79 66 24 chr1 173870789 173871582 -108322082 - LTR12 LTR ERV1 0 826 1 4851 213 30 70 chr1 173871582 173872287 -108321377 - MER31-int LTR ERV1 -1742 3194 2463 252 146 21 0 chr1 173872995 173873043 -108320621 - L1MB8 LINE L1 0 6178 6130 8579 239 48 4 chr1 173873185 173875461 -108318203 - L1 LINE L1 -825 5321 2947 2236 162 8 2 chr1 173875562 173875956 -108317708 + L1P LINE L1 1812 2207 -3939 1124 94 24 0 chr1 173875960 173876130 -108317534 + MER4A-int LTR ERV1 4384 4557 -2041 3732 90 35 25 chr1 173876131 173876695 -108316969 + MER4A-int LTR ERV1 6029 6598 0 618 75 11 21 chr1 173876702 173876795 -108316869 + MER4A LTR ERV1 7 98 -566 * 1726 117 43 23 chr1 173876791 173877115 -108316549 + MER4A LTR ERV1 257 645 -19 4152 61 63 0 chr1 173877378 173877903 -108315761 + LTR6B LTR ERV1 1 558 0 227 216 20 0 chr1 173877928 173877979 -108315685 - MIR SINE MIR -59 149 98 718 195 8 0 chr1 173878131 173878259 -108315405 + FLAM_A SINE Alu 5 133 0 2394 106 53 53 chr1 173878406 173878804 -108314860 - MER48 LTR ERV1 0 398 1 29849 49 9 1 chr1 173880765 173884476 -108309188 - L1P LINE L1 -1708 4438 697 244 36 0 0 chr1 173884476 173884504 -108309160 + L1P3 LINE L1 963 990 -5471 24 0 0 0 chr1 173884750 173884774 -108308890 + AT_rich Low_complexity Low_complexity 1 24 0 284 287 0 0 chr1 173884921 173885022 -108308642 + (CA)n Simple_repeat Simple_repeat 1 101 0 309 286 71 36 chr1 173886151 173886319 -108307345 + MIR3 SINE MIR 24 197 -11 213 39 0 0 chr1 173886541 173886567 -108307097 + (TG)n Simple_repeat Simple_repeat 2 27 0 2155 126 44 13 chr1 173886749 173887139 -108306525 + L1MA8 LINE L1 5889 6290 -1 471 168 56 0 chr1 173887174 173887281 -108306383 + L1MD3 LINE L1 7882 7994 -1 8113 10 2 0 chr1 173887322 173888625 -108305039 - L1PA2 LINE L1 -4 6151 4848 6631 27 10 0 chr1 173888625 173889399 -108304265 + L1PA2 LINE L1 4087 4868 -1278 256 368 0 0 chr1 173889804 173889891 -108303773 + (TG)n Simple_repeat Simple_repeat 1 87 0 4076 83 20 0 chr1 173890200 173890743 -108302921 + MER41A LTR ERV1 1 554 0 290 288 55 0 chr1 173892037 173892110 -108301554 + MIR SINE MIR 71 147 -115 228 35 0 0 chr1 173892852 173892881 -108300783 + (CA)n Simple_repeat Simple_repeat 1 29 0 882 246 32 33 chr1 173893031 173893308 -108300356 - MLT1I LTR MaLR -3 406 98 299 312 41 63 chr1 173893827 173894048 -108299616 - L2 LINE L2 -12 3260 3045 2252 123 0 0 chr1 173894167 173894469 -108299195 - AluY SINE Alu -9 302 1 2739 154 17 8 chr1 173895165 173895646 -108298018 + MER31A LTR ERV1 1 485 0 1170 61 0 17 chr1 173895677 173895857 -108297807 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 2096 150 3 0 chr1 173895878 173896184 -108297480 + AluSx SINE Alu 1 307 -5 300 352 0 0 chr1 173896325 173896430 -108297234 + (CAGT)n Simple_repeat Simple_repeat 3 107 0 216 294 0 0 chr1 173896437 173896505 -108297159 + (CTCA)n Simple_repeat Simple_repeat 1 68 0 384 326 38 5 chr1 173897532 173897716 -108295948 - MIR3 SINE MIR -1 207 18 696 299 69 28 chr1 173898290 173898825 -108294839 - L1ME4a LINE L1 -57 6064 5508 197 363 25 55 chr1 173899257 173899458 -108294206 + MIR3 SINE MIR 11 205 -3 3040 25 0 0 chr1 173899563 173899918 -108293746 - L1PA3 LINE L1 -3600 2546 2192 23556 35 1 0 chr1 173899918 173903533 -108290131 + L1PA3 LINE L1 2552 6171 0 189 74 0 0 chr1 173903576 173903603 -108290061 + (TG)n Simple_repeat Simple_repeat 1 27 0 318 50 0 0 chr1 173903844 173903884 -108289780 + (TG)n Simple_repeat Simple_repeat 1 40 0 580 218 6 12 chr1 173907375 173907540 -108286124 + GA-rich Low_complexity Low_complexity 3 166 0 215 286 26 13 chr1 173908028 173908105 -108285559 + GA-rich Low_complexity Low_complexity 1 78 0 * 314 260 10 73 chr1 173908056 173908248 -108285416 + A-rich Low_complexity Low_complexity 1 180 0 330 317 76 62 chr1 173909147 173909437 -108284227 + LTR16C LTR ERVL 195 488 -3 276 229 0 0 chr1 173909595 173909656 -108284008 - MER3 DNA MER1_type 0 209 149 1876 137 54 0 chr1 173910179 173910457 -108283207 - AluSq SINE Alu -20 293 1 618 293 22 31 chr1 173910534 173910759 -108282905 - Charlie1a DNA MER1_type -1232 223 1 1367 189 30 0 chr1 173911256 173911520 -108282144 + Charlie1a DNA MER1_type 346 617 -838 722 237 0 0 chr1 173911590 173911770 -108281894 - FRAM SINE Alu 0 190 11 1221 251 121 45 chr1 173911776 173912238 -108281426 + MLT1E LTR MaLR 97 593 0 1063 193 31 86 chr1 173912238 173912555 -108281109 + Charlie1a DNA MER1_type 603 901 -554 320 171 183 0 chr1 173912628 173912710 -108280954 - Charlie1 DNA MER1_type -257 2504 2408 3967 243 103 17 chr1 173912714 173913314 -108280350 - L1MD2 LINE L1 -14 6345 5798 1720 187 23 3 chr1 173913314 173913614 -108280050 - AluJo SINE Alu -6 306 1 3967 243 103 17 chr1 173913614 173915004 -108278660 - L1MD2 LINE L1 -561 5798 4181 1270 169 58 19 chr1 173915005 173915266 -108278398 + Charlie1 DNA MER1_type 2187 2457 -304 665 0 25 0 chr1 173916175 173916255 -108277409 + L1PA4 LINE L1 6074 6155 0 285 278 71 24 chr1 173916390 173916516 -108277148 + MIR3 SINE MIR 12 143 -65 210 296 28 83 chr1 173917328 173917436 -108276228 + MIR3 SINE MIR 61 162 -46 725 169 68 17 chr1 173917693 173917870 -108275794 + MER53 DNA DNA 1 186 -3 216 317 50 20 chr1 173918148 173918249 -108275415 + MIR SINE MIR 99 202 -60 1456 183 27 89 chr1 173918690 173919061 -108274603 - L1P3 LINE L1 -5837 624 277 259 260 171 20 chr1 173919983 173920129 -108273535 - MIR3 SINE MIR -21 187 20 196 341 57 11 chr1 173920237 173920325 -108273339 - MIR3 SINE MIR -106 102 11 390 21 0 0 chr1 173920333 173920380 -108273284 + (CA)n Simple_repeat Simple_repeat 1 47 0 222 37 0 0 chr1 173920654 173920681 -108272983 + (CAG)n Simple_repeat Simple_repeat 1 27 0 548 269 85 19 chr1 173923542 173923754 -108269910 + L1ME3 LINE L1 5934 6159 -3 1451 174 46 53 chr1 173924031 173924357 -108269307 + AluSx SINE Alu 1 312 0 519 267 69 64 chr1 173924742 173925146 -108268518 - L2 LINE L2 -64 3249 2844 282 136 0 0 chr1 173925529 173925573 -108268091 - L1M1 LINE L1 -561 5739 5696 23 33 0 0 chr1 173925629 173925659 -108268005 + AT_rich Low_complexity Low_complexity 1 30 0 1832 131 42 0 chr1 173926349 173926661 -108267003 - L1MA5 LINE L1 -2 6298 5974 10323 178 42 9 chr1 173926770 173930029 -108263635 - L1MA5 LINE L1 -278 6022 2654 303 71 0 0 chr1 173930270 173930312 -108263352 + (GA)n Simple_repeat Simple_repeat 2 43 0 300 267 14 27 chr1 173930358 173930504 -108263160 + (TG)n Simple_repeat Simple_repeat 2 145 0 233 356 171 6 chr1 173931980 173932320 -108261344 + L2 LINE L2 2917 3312 -1 240 340 104 14 chr1 173932360 173932504 -108261160 + MIR3 SINE MIR 32 188 -20 183 239 0 90 chr1 173933739 173933806 -108259858 - L2 LINE L2 -2 3311 3251 290 218 58 46 chr1 173933893 173933980 -108259684 - MIR3 SINE MIR -34 174 87 183 239 0 90 chr1 173934966 173935033 -108258631 + L2 LINE L2 3251 3311 -2 228 185 0 0 chr1 173935306 173935360 -108258304 + (ACTG)n Simple_repeat Simple_repeat 4 57 0 212 348 35 21 chr1 173936685 173936826 -108256838 - MIR3 SINE MIR -41 167 25 497 291 30 0 chr1 173936974 173937108 -108256556 + MIR SINE MIR 53 190 -72 216 0 0 0 chr1 173937260 173937284 -108256380 + (TG)n Simple_repeat Simple_repeat 1 24 0 252 306 0 24 chr1 173937639 173937724 -108255940 + GA-rich Low_complexity Low_complexity 3 85 0 200 250 0 0 chr1 173937959 173938003 -108255661 - MIR SINE MIR -128 134 91 297 263 21 17 chr1 173938442 173938525 -108255139 + MIR SINE MIR 4 88 -120 492 299 95 36 chr1 173938553 173938774 -108254890 - MIR SINE MIR 0 262 29 273 247 52 31 chr1 173939277 173939374 -108254290 - MER5B DNA MER1_type 0 178 80 705 284 80 53 chr1 173939874 173940399 -108253265 - MER34 LTR ERV1 -3 539 1 414 327 100 0 chr1 173940692 173940842 -108252822 - MIR3 SINE MIR -15 193 29 251 272 175 55 chr1 173940997 173941214 -108252450 - MIR SINE MIR 0 262 20 21 36 0 0 chr1 173941646 173941674 -108251990 + AT_rich Low_complexity Low_complexity 1 28 0 306 235 157 17 chr1 173941713 173941828 -108251836 - L1ME3A LINE L1 -16 6154 6024 1637 255 28 13 chr1 173941847 173942472 -108251192 - L1ME3A LINE L1 -239 5931 4458 221 231 0 0 chr1 173942767 173942806 -108250858 + C-rich Low_complexity Low_complexity 5 43 0 1408 208 26 0 chr1 173942822 173943130 -108250534 - L1PA16 LINE L1 -28 6138 5823 537 143 0 38 chr1 173943128 173943233 -108250431 + L1PA16 LINE L1 5720 5820 -346 * 2005 133 51 26 chr1 173944322 173944674 -108248990 - THE1B LTR MaLR 0 364 4 207 358 130 16 chr1 173946212 173946335 -108247329 - MIR3 SINE MIR -26 182 46 207 167 0 0 chr1 173948221 173948257 -108245407 + (CA)n Simple_repeat Simple_repeat 1 36 0 353 309 89 0 chr1 173948810 173948978 -108244686 - MLT1J2 LTR MaLR -2 448 266 303 303 39 26 chr1 173949070 173949225 -108244439 - MLT1J2 LTR MaLR -293 157 1 5765 128 9 1 chr1 173949813 173949842 -108243822 - L1PA16 LINE L1 -9 6157 6130 2165 134 129 8 chr1 173949842 173950223 -108243441 + MSTA LTR MaLR 2 428 0 5765 128 9 1 chr1 173950223 173951803 -108241861 - L1PA16 LINE L1 -36 6130 4550 754 193 25 59 chr1 173951805 173952044 -108241620 + L1PA16 LINE L1 4308 4538 -1608 1614 194 33 3 chr1 173952526 173952892 -108240772 - L1MB7 LINE L1 0 6184 5808 1181 126 0 0 chr1 173952892 173953075 -108240589 - L1PA16 LINE L1 -202 5964 5782 204 186 88 9 chr1 173953132 173953245 -108240419 + (TTATA)n Simple_repeat Simple_repeat 1 122 0 2607 170 10 10 chr1 173953253 173953752 -108239912 - L1MA6 LINE L1 -245 6055 5557 1731 157 10 0 chr1 173953750 173954062 -108239602 - L1PA15 LINE L1 -251 5914 5600 * 351 0 0 0 chr1 173957958 173957997 -108235667 + (CA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr1 173958476 173958504 -108235160 + AT_rich Low_complexity Low_complexity 1 28 0 306 286 45 27 chr1 173958554 173958666 -108234998 + L1ME4a LINE L1 5968 6081 -40 258 211 110 46 chr1 173959118 173959227 -108234437 + MIR SINE MIR 137 252 -10 1196 224 22 22 chr1 173960221 173960583 -108233081 + L1MC3 LINE L1 5589 5950 -1835 * 1422 260 47 10 chr1 173960559 173961179 -108232485 + L1M4c LINE L1 1338 2077 -4307 1233 127 73 36 chr1 173961205 173961425 -108232239 - AluSg/x SINE Alu 0 312 85 318 242 52 7 chr1 173961439 173961592 -108232072 + L1M4c LINE L1 2108 2267 -4117 2489 265 62 29 chr1 173961620 173962525 -108231139 + L1M4c LINE L1 2325 3318 -3064 2366 97 0 0 chr1 173962525 173962825 -108230839 - AluY SINE Alu -11 300 1 2489 265 62 29 chr1 173962825 173963529 -108230135 + L1M4c LINE L1 3318 3997 -2385 10804 200 27 23 chr1 173963548 173966312 -108227352 + L1PA13 LINE L1 2 2783 -4014 10694 184 40 11 chr1 173966325 173967108 -108226556 + L1PA13 LINE L1 3567 4326 -2488 351 0 0 0 chr1 173967108 173967147 -108226517 + (CA)n Simple_repeat Simple_repeat 2 40 0 10694 184 40 11 chr1 173967147 173969508 -108224156 + L1PA13 LINE L1 4326 6796 -18 3889 170 34 15 chr1 173969508 173970314 -108223350 + L1MA4A LINE L1 5477 6297 -6 180 0 0 0 chr1 173970414 173970434 -108223230 + (GGA)n Simple_repeat Simple_repeat 2 21 0 184 333 35 35 chr1 173970487 173970631 -108223033 - MIR SINE MIR -19 243 100 244 324 0 0 chr1 173972674 173972742 -108220922 + MIR SINE MIR 45 112 -96 231 114 0 0 chr1 173974438 173974473 -108219191 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 54 0 0 chr1 173974958 173974995 -108218669 + AT_rich Low_complexity Low_complexity 1 37 0 247 195 106 62 chr1 173975629 173975742 -108217922 + MIR SINE MIR 135 252 -10 1173 198 48 36 chr1 173976701 173977059 -108216605 + L1MC3 LINE L1 5589 5950 -1835 * 3369 251 92 41 chr1 173977057 173977508 -108216156 + L1M4c LINE L1 1362 1789 -4593 2289 96 0 0 chr1 173977508 173977799 -108215865 + AluSg SINE Alu 1 291 -19 3369 251 92 41 chr1 173977799 173979849 -108213815 + L1M4c LINE L1 1789 3997 -2385 657 152 76 0 chr1 173979867 173979972 -108213692 + L1PA13 LINE L1 1 113 -6674 * 4075 216 18 2 chr1 173979970 173980961 -108212703 + L1PA13 LINE L1 2951 3957 -2840 8597 186 8 13 chr1 173980961 173983603 -108210061 + L1PA13 LINE L1 4185 6808 -6 4435 149 12 15 chr1 173983603 173984414 -108209250 + L1MA4A LINE L1 5485 6298 -5 201 39 0 0 chr1 173984504 173984530 -108209134 + (ATG)n Simple_repeat Simple_repeat 1 26 0 205 217 22 0 chr1 173987672 173987718 -108205946 + GA-rich Low_complexity Low_complexity 1 47 0 414 0 0 0 chr1 173988402 173988448 -108205216 + (CA)n Simple_repeat Simple_repeat 1 46 0 644 281 39 26 chr1 173988643 173988964 -108204700 - L1MD2 LINE L1 -94 6072 5839 21 57 0 0 chr1 173989050 173989085 -108204579 + AT_rich Low_complexity Low_complexity 1 35 0 264 268 45 27 chr1 173989358 173989470 -108204194 + L1ME4a LINE L1 5968 6081 -40 1977 141 3 0 chr1 173989778 173990076 -108203588 + AluSg1 SINE Alu 1 299 -10 22 0 0 0 chr1 173990080 173990102 -108203562 + AT_rich Low_complexity Low_complexity 1 22 0 227 229 94 52 chr1 173990267 173990363 -108203301 + MIR SINE MIR 145 244 -18 1071 239 51 20 chr1 173991360 173991712 -108201952 + L1MC3 LINE L1 5589 5951 -1834 1753 259 52 2 chr1 173991713 173992308 -108201356 + L1MC3 LINE L1 1366 2085 -4299 1341 168 9 0 chr1 173992319 173992545 -108201119 - AluSg/x SINE Alu 0 310 83 1435 247 65 47 chr1 173992549 173993077 -108200587 + L1MC3 LINE L1 2097 2614 -3768 7739 40 3 0 chr1 173993077 173994790 -108198874 - L1PA4 LINE L1 0 6155 4439 1435 247 65 47 chr1 173994790 173995305 -108198359 + L1MC3 LINE L1 2614 3152 -3230 1033 244 52 12 chr1 173995445 173995789 -108197875 + L1MC3 LINE L1 5825 6182 -1839 548 229 108 0 chr1 173995778 173995935 -108197729 + L1M4c LINE L1 1347 1520 -4864 * 1609 250 57 5 chr1 173995904 173996486 -108197178 + L1M4c LINE L1 1356 2066 -4318 1094 159 43 64 chr1 173996528 173996761 -108196903 - AluSg/x SINE Alu 0 312 85 836 203 129 7 chr1 173996765 173997075 -108196589 + L1M4c LINE L1 2097 2444 -3940 2068 258 68 41 chr1 173997082 173998165 -108195499 + L1M4c LINE L1 2886 3998 -2384 10882 233 36 25 chr1 173998182 174001804 -108191860 + L1PA13 LINE L1 1 3666 -3131 1329 142 0 0 chr1 174001804 174002001 -108191663 + AluY SINE Alu 93 289 -22 10036 202 19 9 chr1 174002001 174003035 -108190629 + L1PA13 LINE L1 3676 4698 -2116 3375 194 26 85 chr1 174003035 174004063 -108189601 - LTR5 LTR ERVK 0 969 2 10036 202 19 9 chr1 174004063 174004548 -108189116 + L1PA13 LINE L1 4698 5177 -1637 2297 114 0 0 chr1 174004548 174004856 -108188808 + AluY SINE Alu 1 308 -3 10036 202 19 9 chr1 174004856 174006457 -108187207 + L1PA13 LINE L1 5177 6810 -4 3892 180 17 16 chr1 174006457 174007263 -108186401 + L1MA4A LINE L1 5475 6297 -6 1068 65 0 0 chr1 174007273 174007412 -108186252 + L1PA4 LINE L1 6014 6152 -3 279 133 0 0 chr1 174007505 174007550 -108186114 + (ATGGTG)n Simple_repeat Simple_repeat 1 45 0 228 293 40 13 chr1 174009765 174009840 -108183824 + MIR SINE MIR 45 121 -87 249 239 0 0 chr1 174010710 174010756 -108182908 + polypurine Low_complexity Low_complexity 1 46 0 207 114 0 0 chr1 174011452 174011487 -108182177 + (CA)n Simple_repeat Simple_repeat 1 35 0 986 261 65 12 chr1 174011686 174012011 -108181653 - L1MD2 LINE L1 -176 6183 5842 25 51 0 0 chr1 174012101 174012140 -108181524 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr1 174012334 174012359 -108181305 + AT_rich Low_complexity Low_complexity 1 25 0 309 277 45 27 chr1 174012413 174012525 -108181139 + L1ME4a LINE L1 5968 6081 -40 246 219 86 57 chr1 174012980 174013085 -108180579 + MIR SINE MIR 137 244 -18 524 43 0 0 chr1 174014216 174014285 -108179379 + L1PA3 LINE L1 6082 6150 -5 883 222 58 19 chr1 174014305 174014562 -108179102 + L1MC3 LINE L1 5686 5952 -1833 * 1701 246 69 6 chr1 174014545 174015070 -108178594 + L1M4c LINE L1 1347 1904 -4480 290 153 34 0 chr1 174015077 174015136 -108178528 + L1M4c LINE L1 2006 2066 -4318 1191 157 39 0 chr1 174015166 174015370 -108178294 - AluSg/x SINE Alu -16 294 83 2879 267 58 30 chr1 174015388 174017207 -108176457 + L1M4c LINE L1 2112 3982 -2400 11282 229 32 17 chr1 174017239 174020822 -108172842 + L1PA13 LINE L1 1 3666 -3131 257 61 0 0 chr1 174020823 174020856 -108172808 + AluSq/x SINE Alu 96 128 -175 5062 146 12 7 chr1 174020856 174021785 -108171879 + L1PA13 LINE L1 5229 6162 -1 2952 182 19 9 chr1 174021785 174022362 -108171302 + L1MA4A LINE L1 5490 6072 -231 3426 89 74 2 chr1 174022362 174022892 -108170772 - L1P LINE L1 -1279 4867 4300 2689 49 19 2 chr1 174022890 174023444 -108170220 + L1PA7 LINE L1 5051 5610 -544 * 11118 30 1 1 chr1 174023444 174025570 -108168094 + L1PA3 LINE L1 4059 6155 0 4323 61 0 0 chr1 174025592 174026133 -108167531 + L1PA7 LINE L1 5607 6147 -7 1333 132 4 40 chr1 174026139 174026390 -108167274 + L1MA4A LINE L1 6057 6298 -5 366 151 0 0 chr1 174026479 174026552 -108167112 + (ATG)n Simple_repeat Simple_repeat 2 74 0 276 331 47 27 chr1 174026580 174026728 -108166936 - MIR SINE MIR -19 243 93 270 0 0 0 chr1 174028783 174028813 -108164851 + (T)n Simple_repeat Simple_repeat 1 30 0 188 255 64 0 chr1 174028810 174028857 -108164807 + MIR SINE MIR 67 116 -92 * 359 68 41 14 chr1 174030503 174030576 -108163088 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 262 188 89 71 chr1 174031115 174031227 -108162437 + L1ME4a LINE L1 5968 6081 -40 182 247 26 65 chr1 174031688 174031765 -108161899 + MIR SINE MIR 145 218 -44 1529 202 14 22 chr1 174032787 174033148 -108160516 + L1MC3 LINE L1 5589 5946 -1839 * 2345 226 50 19 chr1 174033138 174034161 -108159503 + L1M4c LINE L1 1350 2499 -3885 705 266 29 17 chr1 174034163 174034404 -108159260 - LTR4 LTR ERV1 -1 595 352 475 267 14 62 chr1 174034625 174034835 -108158829 - LTR4 LTR ERV1 -396 200 1 5234 257 63 28 chr1 174034846 174036475 -108157189 + L1M4c LINE L1 2495 4066 -2316 1853 169 3 3 chr1 174036475 174036771 -108156893 + AluJb SINE Alu 2 297 -15 2740 29 0 0 chr1 174036771 174037077 -108156587 + AluYa5 SINE Alu 1 306 -5 5234 257 63 28 chr1 174037077 174037412 -108156252 + L1M4c LINE L1 4065 4528 -1854 14268 107 105 11 chr1 174037530 174038239 -108155425 + L1PBa LINE L1 327 968 -5894 7824 105 6 22 chr1 174038239 174039328 -108154336 - MER11C LTR ERVK 0 1071 1 14268 107 105 11 chr1 174039328 174040932 -108152732 + L1PBa LINE L1 968 2913 -3949 318 333 93 74 chr1 174042091 174042349 -108151315 + L2 LINE L2 2995 3257 -15 453 296 75 31 chr1 174042629 174042788 -108150876 - MIR SINE MIR -37 225 60 264 315 72 0 chr1 174042836 174042947 -108150717 - L3 LINE CR1 -466 1111 993 348 290 183 28 chr1 174043022 174043274 -108150390 - L3 LINE CR1 -582 995 705 1927 122 0 41 chr1 174043281 174043575 -108150089 - AluJb SINE Alu -6 306 25 311 282 0 0 chr1 174043660 174043738 -108149926 - MIR SINE MIR -56 206 129 180 263 0 0 chr1 174043802 174043840 -108149824 - L3 LINE CR1 -978 599 562 512 308 71 86 chr1 174044817 174045168 -108148496 + L2 LINE L2 2927 3272 0 220 241 69 23 chr1 174045169 174045256 -108148408 + MIR3 SINE MIR 118 208 0 459 313 50 38 chr1 174046040 174046068 -108147596 + L2 LINE L2 2231 2257 -1057 2265 97 0 3 chr1 174046068 174046366 -108147298 - AluSx SINE Alu -15 297 1 459 313 50 38 chr1 174046366 174046577 -108147087 + L2 LINE L2 2257 2473 -841 2003 243 91 9 chr1 174046733 174047524 -108146140 + L2 LINE L2 2444 3309 -4 325 301 94 84 chr1 174047532 174048010 -108145654 + L2 LINE L2 1623 2105 -1209 1271 134 10 0 chr1 174048058 174048252 -108145412 - L1MC3 LINE L1 -261 7524 7329 1121 181 29 57 chr1 174048250 174048565 -108145099 + L1MC3 LINE L1 6694 6999 -786 * 2101 216 29 14 chr1 174049137 174050047 -108143617 - L1MC/D LINE L1 -745 5401 4706 1409 146 0 40 chr1 174050148 174050423 -108143241 + AluSx SINE Alu 36 299 -13 7307 38 1 0 chr1 174050622 174051515 -108142149 + L1P LINE L1 2259 3152 -2994 395 336 86 20 chr1 174051515 174051759 -108141905 + L2 LINE L2 2049 2308 -1006 258 264 43 79 chr1 174051930 174052070 -108141594 + MIR SINE MIR 117 251 -11 191 297 62 16 chr1 174052657 174052721 -108140943 + L2 LINE L2 2896 2962 -352 201 250 67 0 chr1 174052982 174053042 -108140622 + L2 LINE L2 3160 3223 -90 217 309 0 15 chr1 174053787 174053855 -108139809 + MIR SINE MIR 86 152 -56 3763 23 0 0 chr1 174053984 174054423 -108139241 - L1HS LINE L1 -817 5329 4891 * 5778 54 2 30 chr1 174054420 174055372 -108138292 + L1HS LINE L1 5346 6224 0 206 302 104 10 chr1 174055927 174056023 -108137641 - MIR SINE MIR -86 122 18 23 0 0 0 chr1 174056055 174056078 -108137586 + AT_rich Low_complexity Low_complexity 1 23 0 1635 185 55 25 chr1 174056318 174056495 -108137169 - MLT1A2 LTR MaLR 0 374 204 279 0 0 0 chr1 174056495 174056526 -108137138 + (GA)n Simple_repeat Simple_repeat 1 31 0 1635 185 55 25 chr1 174056526 174056711 -108136953 - MLT1A2 LTR MaLR -170 204 1 2112 127 111 8 chr1 174056870 174057240 -108136424 - MER65A LTR ERV1 0 445 38 1762 222 26 38 chr1 174057246 174057715 -108135949 - MER65A-int LTR ERV1 -8 4863 4401 1918 239 68 0 chr1 174057717 174058143 -108135521 - MER65A-int LTR ERV1 -812 4059 3605 1167 177 117 99 chr1 174058258 174058647 -108135017 - L1MC5 LINE L1 -525 7436 7037 273 29 0 0 chr1 174058647 174058681 -108134983 + (CA)n Simple_repeat Simple_repeat 2 35 0 1167 177 117 99 chr1 174058681 174058727 -108134937 - L1MC5 LINE L1 -924 7037 6993 284 188 31 0 chr1 174058744 174058808 -108134856 - MLT1F1 LTR MaLR -13 554 489 1609 112 0 5 chr1 174059049 174059273 -108134391 - AluSg/x SINE Alu -4 308 86 849 301 40 8 chr1 174059316 174059691 -108133973 + L1M4 LINE L1 4893 5279 -867 567 254 74 56 chr1 174059733 174060290 -108133374 - L1MC5 LINE L1 -743 5403 4893 246 235 0 0 chr1 174060326 174060377 -108133287 - HAL1b LINE L1 -613 735 685 986 204 6 0 chr1 174060457 174060633 -108133031 - MSTD LTR MaLR 0 396 220 650 200 0 9 chr1 174060625 174060740 -108132924 - MSTD LTR MaLR -282 114 1 * 830 291 65 40 chr1 174060740 174061245 -108132419 - HAL1b LINE L1 -751 597 80 305 244 87 0 chr1 174061248 174061363 -108132301 - L1MB2 LINE L1 -2 6169 6045 1294 178 13 0 chr1 174062216 174062452 -108131212 - L1MA8 LINE L1 -23 6268 6030 1755 214 21 32 chr1 174062613 174062991 -108130673 - MLT1E LTR MaLR 0 593 220 1612 189 23 3 chr1 174063026 174063332 -108130332 + AluJb SINE Alu 1 312 0 36449 88 13 38 chr1 174063376 174069374 -108124290 + L1PA6 LINE L1 12 5856 -298 2331 64 20 3 chr1 174069477 174069772 -108123892 + L1PA6 LINE L1 5850 6149 -5 216 0 0 0 chr1 174071391 174071415 -108122249 + (TG)n Simple_repeat Simple_repeat 2 25 0 210 244 0 0 chr1 174072441 174072482 -108121182 - MIR3 SINE MIR -24 184 144 511 303 101 5 chr1 174072535 174072753 -108120911 + MIR SINE MIR 24 262 0 359 335 90 20 chr1 174073512 174073757 -108119907 + MIR SINE MIR 1 262 0 237 260 27 27 chr1 174074113 174074186 -108119478 - MIR SINE MIR -60 148 76 2230 125 0 0 chr1 174075724 174076035 -108117629 + AluY SINE Alu 1 311 0 198 0 0 0 chr1 174077837 174077859 -108115805 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 284 296 53 23 chr1 174079489 174079621 -108114043 + MIR SINE MIR 121 256 -6 750 217 66 30 chr1 174080336 174080534 -108113130 - L2 LINE L2 -1 3312 3108 230 191 0 0 chr1 174081994 174082041 -108111623 + MIR SINE MIR 104 150 -112 200 253 114 38 chr1 174082634 174082713 -108110951 - L2 LINE L2 -9 3304 3220 1889 154 3 23 chr1 174082735 174083041 -108110623 + AluJo SINE Alu 1 300 -12 473 173 47 47 chr1 174083377 174083504 -108110160 - MER65B LTR ERV1 -403 128 2 325 362 94 21 chr1 174083628 174084201 -108109463 - L2 LINE L2 -212 3060 2416 369 295 163 9 chr1 174084213 174084545 -108109119 - L2 LINE L2 -1093 2221 1839 182 273 0 0 chr1 174084592 174084636 -108109028 + L2 LINE L2 3228 3271 -1 287 254 6 10 chr1 174085264 174085576 -108108088 + (TA)n Simple_repeat Simple_repeat 1 310 0 300 243 0 0 chr1 174085643 174085812 -108107852 + (TA)n Simple_repeat Simple_repeat 2 170 0 430 313 0 0 chr1 174085822 174085988 -108107676 + (TATG)n Simple_repeat Simple_repeat 3 168 0 * 468 303 0 0 chr1 174085866 174086044 -108107620 + (TA)n Simple_repeat Simple_repeat 1 178 0 * 528 275 0 22 chr1 174086002 174086184 -108107480 + (TATG)n Simple_repeat Simple_repeat 3 180 0 1690 174 3 10 chr1 174086502 174086796 -108106868 - AluJb SINE Alu -15 297 6 1083 116 0 0 chr1 174086798 174086936 -108106728 - AluJo SINE Alu -174 138 1 230 271 176 12 chr1 174087885 174087970 -108105694 - MIR SINE MIR -92 170 72 * 274 206 16 48 chr1 174087950 174088013 -108105651 - L2 LINE L2 -2 3270 3210 218 230 81 54 chr1 174088014 174088088 -108105576 - MIR SINE MIR -105 103 28 343 246 78 49 chr1 174089759 174089901 -108103763 - MIR3 SINE MIR -3 205 60 322 205 48 145 chr1 174090169 174090335 -108103329 - L1M2 LINE L1 -5949 900 751 973 183 69 15 chr1 174091153 174091355 -108102309 + MER20 DNA MER1_type 3 215 -4 673 152 0 0 chr1 174091572 174091677 -108101987 + U6 snRNA snRNA 1 105 -2 3782 217 12 85 chr1 174091681 174093293 -108100371 + L1 LINE L1 1903 3408 -2738 242 332 72 79 chr1 174095156 174095599 -108098065 - L2 LINE L2 -8 3264 2825 425 197 14 57 chr1 174096501 174096660 -108097004 - MER63 DNA MER1_type 0 1061 682 3170 165 34 48 chr1 174097432 174097775 -108095889 - L1PB4 LINE L1 0 6156 5810 1960 131 4 0 chr1 174097775 174098050 -108095614 - AluSg SINE Alu 0 310 35 3170 165 34 48 chr1 174098050 174098103 -108095561 - L1PB4 LINE L1 -346 5810 5758 264 59 0 0 chr1 174098103 174098137 -108095527 + (CA)n Simple_repeat Simple_repeat 2 35 0 3170 165 34 48 chr1 174098137 174098412 -108095252 - L1PB4 LINE L1 -398 5758 5493 300 70 0 0 chr1 174098412 174098455 -108095209 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 752 113 0 0 chr1 174098455 174098561 -108095103 - AluSc SINE Alu -32 277 172 218 330 11 11 chr1 174099381 174099469 -108094195 + MIR3 SINE MIR 15 102 -106 188 277 31 46 chr1 174099865 174099930 -108093734 - L2 LINE L2 -94 3178 3115 227 254 118 30 chr1 174100325 174100494 -108093170 - L1M4 LINE L1 -1462 4684 4501 555 298 75 65 chr1 174100504 174101000 -108092664 - L1M4 LINE L1 -1698 4448 3948 222 37 0 0 chr1 174101000 174101027 -108092637 + (T)n Simple_repeat Simple_repeat 1 27 0 1898 121 59 31 chr1 174101070 174101360 -108092304 - AluSx SINE Alu -14 298 1 334 291 51 17 chr1 174101525 174101817 -108091847 - L1M4 LINE L1 -2559 3587 3286 509 292 95 12 chr1 174101825 174102068 -108091596 - L1M4 LINE L1 -2925 3221 2959 993 138 13 85 chr1 174102370 174102594 -108091070 + THE1C LTR MaLR 168 375 0 335 299 48 30 chr1 174103387 174103618 -108090046 + HAL1 LINE L1 1122 1356 -1151 339 293 227 11 chr1 174103796 174104250 -108089414 + HAL1 LINE L1 1611 2162 -345 260 367 44 6 chr1 174104362 174104520 -108089144 - MLT1I LTR MaLR -52 357 194 563 240 85 32 chr1 174104522 174104847 -108088817 + MLT1H LTR MaLR 106 493 -56 374 302 15 13 chr1 174105226 174105383 -108088281 + L1M3e LINE L1 1 1057 -5980 12224 179 29 84 chr1 174105439 174107297 -108086367 + L1MA4A LINE L1 6 1758 -5090 543 262 0 0 chr1 174107297 174107423 -108086241 + FLAM_A SINE Alu 6 131 -11 12224 179 29 84 chr1 174107423 174108580 -108085084 + L1MA4A LINE L1 1758 2976 -3872 9733 207 31 29 chr1 174108594 174111284 -108082380 + L1MA4A LINE L1 3128 5823 -1025 3713 134 23 51 chr1 174111284 174112024 -108081640 + L1MA4A LINE L1 6282 7000 -5 258 143 0 0 chr1 174112115 174112164 -108081500 + (ATG)n Simple_repeat Simple_repeat 2 50 0 214 338 0 15 chr1 174114353 174114421 -108079243 + MIR SINE MIR 64 130 -78 8834 31 2 0 chr1 174114794 174115908 -108077756 - L1P LINE L1 -1894 4252 3137 909 214 36 75 chr1 174115975 174116395 -108077269 - L1PA15-16 LINE L1 -6471 392 3 574 280 103 34 chr1 174117026 174117523 -108076141 + HAL1b LINE L1 560 1090 -258 300 278 33 11 chr1 174117549 174117639 -108076025 + HAL1b LINE L1 1164 1255 -93 685 261 116 29 chr1 174118709 174118985 -108074679 - L2 LINE L2 -447 2867 2568 1204 234 139 51 chr1 174118991 174119674 -108073990 + L1ME3A LINE L1 4342 5084 -1062 646 286 120 28 chr1 174119691 174120332 -108073332 + L1ME3A LINE L1 5257 5956 -206 391 316 62 40 chr1 174120371 174120596 -108073068 + L1ME3A LINE L1 5925 6154 -16 1489 42 10 16 chr1 174121286 174121478 -108072186 - AluY SINE Alu 0 311 121 298 338 43 14 chr1 174121478 174121617 -108072047 + L2 LINE L2 2934 3076 -237 413 261 42 25 chr1 174121692 174121811 -108071853 + L2 LINE L2 3193 3313 0 328 255 34 13 chr1 174121840 174121938 -108071726 - MIR SINE MIR -59 149 51 180 364 33 0 chr1 174124511 174124632 -108069032 + MIR SINE MIR 69 193 -69 21 82 0 0 chr1 174125781 174125830 -108067834 + AT_rich Low_complexity Low_complexity 1 49 0 337 266 56 35 chr1 174125891 174126034 -108067630 + MIR SINE MIR 73 218 -44 214 333 0 12 chr1 174126138 174126219 -108067445 + GA-rich Low_complexity Low_complexity 4 83 0 23 33 0 0 chr1 174126286 174126316 -108067348 + AT_rich Low_complexity Low_complexity 1 30 0 3678 176 21 55 chr1 174126388 174127308 -108066356 - L1 LINE L1 -2032 4114 3227 655 335 146 21 chr1 174127310 174128164 -108065500 + L2 LINE L2 1786 2746 -568 183 280 0 0 chr1 174128582 174128632 -108065032 + L2 LINE L2 3262 3311 -2 23 0 0 0 chr1 174129056 174129079 -108064585 + AT_rich Low_complexity Low_complexity 1 23 0 425 238 139 12 chr1 174129535 174129688 -108063976 - Tigger5 DNA MER2_type -2125 198 1 491 268 64 47 chr1 174129767 174130002 -108063662 + L1MC5 LINE L1 7649 7887 -74 4650 159 31 23 chr1 174130008 174130176 -108063488 - L1MA10 LINE L1 -14 6320 6155 248 68 0 23 chr1 174130176 174130220 -108063444 + (GTTTG)n Simple_repeat Simple_repeat 5 47 0 4650 159 31 23 chr1 174130220 174130274 -108063390 - L1MA10 LINE L1 -179 6155 6103 1400 139 152 58 chr1 174130274 174130604 -108063060 - THE1B LTR MaLR -3 361 1 9981 131 49 12 chr1 174130604 174132126 -108061538 - THE1C-int LTR MaLR 0 1580 4 1814 151 80 50 chr1 174132129 174132493 -108061171 - THE1C LTR MaLR 0 375 1 4650 159 31 23 chr1 174132493 174133101 -108060563 - L1MA10 LINE L1 -232 6102 5477 5674 31 34 0 chr1 174133104 174133744 -108059920 + L1PA4 LINE L1 5479 6140 -15 630 174 8 8 chr1 174133744 174133876 -108059788 - L1MA10 LINE L1 -909 5237 5106 2972 81 0 0 chr1 174134256 174134628 -108059036 - L1PA13 LINE L1 -2 6161 5790 313 328 63 23 chr1 174135022 174135196 -108058468 + L2 LINE L2 3133 3313 0 1376 190 60 45 chr1 174136767 174137098 -108056566 + MER2 DNA MER2_type 1 336 -9 552 30 0 0 chr1 174137414 174137480 -108056184 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 180 0 0 0 chr1 174138712 174138732 -108054932 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2384 94 7 0 chr1 174139452 174139761 -108053903 + AluSp SINE Alu 1 311 -2 1301 192 4 0 chr1 174140259 174140509 -108053155 + L1P LINE L1 1665 1915 -4231 267 31 0 0 chr1 174141244 174141276 -108052388 + (TG)n Simple_repeat Simple_repeat 2 33 0 4256 158 25 26 chr1 174141320 174141626 -108052038 + MER72 LTR ERV1 1 306 -416 2172 112 0 14 chr1 174141626 174141922 -108051742 + AluSc SINE Alu 1 292 -17 4256 158 25 26 chr1 174141922 174142338 -108051326 + MER72 LTR ERV1 306 722 0 21 57 0 0 chr1 174142347 174142382 -108051282 + AT_rich Low_complexity Low_complexity 1 35 0 226 404 64 6 chr1 174145318 174145474 -108048190 - MIR3 SINE MIR -27 181 17 365 274 123 38 chr1 174145799 174146011 -108047653 - L3 LINE CR1 -11 1566 1337 256 256 35 12 chr1 174146054 174146140 -108047524 + L3 LINE CR1 1436 1523 -54 707 265 20 20 chr1 174146594 174146798 -108046866 - LTR67 LTR ERVL 0 557 354 428 289 22 7 chr1 174146938 174147073 -108046591 - LTR67 LTR ERVL -385 172 36 212 189 0 0 chr1 174147248 174147285 -108046379 + A-rich Low_complexity Low_complexity 1 37 0 735 291 149 41 chr1 174147460 174148147 -108045517 + L2 LINE L2 2534 3299 -14 1754 128 105 4 chr1 174148147 174148413 -108045251 + AluSx SINE Alu 1 293 -19 285 316 13 0 chr1 174148552 174148631 -108045033 + MIR3 SINE MIR 77 156 -52 2222 218 42 65 chr1 174149295 174149992 -108043672 - L1ME2 LINE L1 -133 6031 5351 * 4715 235 68 9 chr1 174149989 174151309 -108042355 - L1ME2 LINE L1 -1295 4851 3439 1160 256 48 43 chr1 174151309 174151704 -108041960 - MLT2C1 LTR ERVL 0 397 1 4715 235 68 9 chr1 174151704 174151812 -108041852 - L1ME2 LINE L1 -2707 3439 3339 211 229 0 0 chr1 174151909 174151957 -108041707 + (TAA)n Simple_repeat Simple_repeat 2 49 0 728 304 55 52 chr1 174151961 174152418 -108041246 + L2 LINE L2 2446 2903 -411 2739 273 15 33 chr1 174152449 174153570 -108040094 - L1ME3A LINE L1 -13 6157 5051 5038 174 22 21 chr1 174153613 174154648 -108039016 - L1MA4A LINE L1 0 6303 5268 23 54 0 0 chr1 174154653 174154690 -108038974 + AT_rich Low_complexity Low_complexity 1 37 0 5458 75 10 4 chr1 174154727 174155418 -108038246 - L1PA8 LINE L1 -2 6170 5476 796 114 0 26 chr1 174155418 174155532 -108038132 - AluSp/q SINE Alu -11 302 192 207 264 33 11 chr1 174155583 174155674 -108037990 + A-rich Low_complexity Low_complexity 5 97 0 459 78 16 0 chr1 174156034 174156098 -108037566 - AluJ/FLAM SINE Alu -246 66 2 31742 118 15 57 chr1 174156099 174161820 -108031844 - L1PA8 LINE L1 -686 5486 12 409 227 122 60 chr1 174161871 174162272 -108031392 - Charlie2 DNA MER1_type -261 2601 2176 549 252 8 0 chr1 174164098 174164229 -108029435 - Charlie1 DNA MER1_type 0 2761 2630 965 241 19 5 chr1 174164238 174164450 -108029214 - Charlie1 DNA MER1_type -2546 215 1 192 125 0 0 chr1 174166157 174166189 -108027475 + (CA)n Simple_repeat Simple_repeat 1 32 0 251 357 148 15 chr1 174167002 174167341 -108026323 - L3 LINE CR1 -1 1576 1193 21 0 0 0 chr1 174168747 174168768 -108024896 + AT_rich Low_complexity Low_complexity 1 21 0 2434 162 31 28 chr1 174168768 174169226 -108024438 - L1MB1 LINE L1 -6 6162 5704 438 20 0 0 chr1 174169843 174169894 -108023770 + (TG)n Simple_repeat Simple_repeat 2 52 0 313 274 74 0 chr1 174170224 174170319 -108023345 - L2 LINE L2 0 3313 3212 252 303 182 40 chr1 174171256 174171800 -108021864 - L2 LINE L2 -785 2529 1909 356 269 30 82 chr1 174173328 174173411 -108020253 - MIR SINE MIR -120 142 67 2429 69 0 26 chr1 174173411 174173715 -108019949 - AluSg SINE Alu -13 297 2 356 269 30 82 chr1 174173715 174173765 -108019899 - MIR SINE MIR -195 67 16 555 183 62 36 chr1 174175020 174175226 -108018438 + LTR45 LTR ERV1 264 518 -7 22 56 0 0 chr1 174176466 174176502 -108017162 + AT_rich Low_complexity Low_complexity 1 36 0 552 240 31 0 chr1 174176985 174177114 -108016550 - Charlie4 DNA MER1_type -11 1950 1818 567 274 15 51 chr1 174178205 174178402 -108015262 + MIR SINE MIR 9 198 -64 2337 89 10 3 chr1 174178409 174178712 -108014952 + AluSx SINE Alu 1 305 -7 498 274 57 0 chr1 174178928 174179085 -108014579 + L1MD2 LINE L1 6193 6358 -1 316 330 96 74 chr1 174180242 174180512 -108013152 + L1MC/D LINE L1 5528 5803 -2005 285 168 63 42 chr1 174180520 174180663 -108013001 + (TTAAA)n Simple_repeat Simple_repeat 5 150 0 2529 36 0 0 chr1 174181209 174181490 -108012174 - AluY SINE Alu -2 309 29 197 235 51 71 chr1 174182104 174182202 -108011462 - MIR3 SINE MIR -25 183 88 195 334 86 50 chr1 174182547 174182885 -108010779 + L2 LINE L2 2594 2943 -371 231 229 64 55 chr1 174182935 174183044 -108010620 + L2 LINE L2 2981 3090 -182 215 307 228 0 chr1 174183937 174184064 -108009600 - MIR3 SINE MIR -16 192 37 3890 51 0 28 chr1 174184340 174184847 -108008817 - L1PA2 LINE L1 0 6155 5663 282 306 0 10 chr1 174184881 174184979 -108008685 + MIR SINE MIR 61 156 -65 188 365 0 0 chr1 174185012 174185075 -108008589 + MIR3 SINE MIR 137 199 -9 239 265 72 0 chr1 174185816 174185899 -108007765 - MIR3 SINE MIR -3 205 117 * 389 194 56 9 chr1 174185896 174186004 -108007660 - L2 LINE L2 -897 2417 2305 2109 103 3 10 chr1 174186046 174186338 -108007326 + AluSc SINE Alu 7 296 -13 204 281 0 45 chr1 174186354 174186443 -108007221 - L2 LINE L2 -173 3099 3015 267 313 80 0 chr1 174186494 174186606 -108007058 - MIR SINE MIR -60 202 82 2194 95 3 0 chr1 174186677 174186995 -108006669 - AluSq SINE Alu 0 319 1 1439 232 85 43 chr1 174187148 174187631 -108006033 - MLT1D LTR MaLR -2 503 1 328 259 30 52 chr1 174188018 174188153 -108005511 + L2 LINE L2 2954 3085 -187 246 250 28 0 chr1 174188332 174188404 -108005260 + GA-rich Low_complexity Low_complexity 2 75 0 1458 34 23 0 chr1 174188738 174188914 -108004750 - L1PA4 LINE L1 -4 6151 5972 291 28 0 0 chr1 174191618 174191654 -108002010 + (CCA)n Simple_repeat Simple_repeat 3 38 0 234 262 0 16 chr1 174192967 174193028 -108000636 - MIR SINE MIR -173 89 30 375 241 45 36 chr1 174193091 174193203 -108000461 - L2 LINE L2 0 3272 3160 194 245 20 0 chr1 174193942 174193991 -107999673 + L3 LINE CR1 910 959 -618 526 317 110 3 chr1 174194151 174194441 -107999223 + L3 LINE CR1 1158 1478 -99 693 202 0 0 chr1 174195308 174195422 -107998242 - MER81 DNA DNA 0 114 1 260 323 0 0 chr1 174196154 174196219 -107997445 + MIR SINE MIR 11 75 -187 463 311 88 12 chr1 174196278 174196606 -107997058 - L2 LINE L2 -50 3263 2911 * 710 316 99 20 chr1 174196586 174196981 -107996683 + L3 LINE CR1 1049 1474 -103 971 212 160 10 chr1 174197426 174197714 -107995950 + L1ME LINE L1 5372 5702 -468 206 288 0 0 chr1 174198589 174198648 -107995016 + (CTG)n Simple_repeat Simple_repeat 2 60 0 699 237 57 24 chr1 174198761 174198996 -107994668 + L1ME3A LINE L1 5653 5902 -260 294 123 231 0 chr1 174198996 174199061 -107994603 - MER116 DNA Mariner 0 80 1 816 219 29 68 chr1 174199062 174199341 -107994323 + L1ME3A LINE L1 5902 6169 -1 261 231 111 37 chr1 174199590 174199698 -107993966 + MIR SINE MIR 80 195 -67 407 294 35 18 chr1 174199967 174200137 -107993527 - MIR SINE MIR -27 235 63 477 318 74 32 chr1 174200249 174200560 -107993104 - L2 LINE L2 -6 3307 2984 340 327 48 28 chr1 174200641 174200889 -107992775 - L2 LINE L2 -445 2869 2617 885 299 23 44 chr1 174200933 174201318 -107992346 - L2 LINE L2 -908 2406 2030 315 377 0 0 chr1 174201524 174201638 -107992026 - MIR SINE MIR -129 133 20 260 323 0 0 chr1 174202371 174202436 -107991228 + MIR SINE MIR 11 75 -187 287 254 218 26 chr1 174202495 174202688 -107990976 - L2 LINE L2 -50 3263 3034 468 264 64 0 chr1 174202882 174203007 -107990657 - L2 LINE L2 0 3313 3181 186 333 67 0 chr1 174203016 174203076 -107990588 - L2 LINE L2 0 3272 3209 309 335 99 22 chr1 174203257 174203570 -107990094 - L2 LINE L2 -558 2756 2420 616 285 93 16 chr1 174203597 174203920 -107989744 - L2 LINE L2 -1031 2283 1936 225 94 0 0 chr1 174204484 174204516 -107989148 + (CA)n Simple_repeat Simple_repeat 1 32 0 327 268 0 0 chr1 174205752 174205834 -107987830 + MIR3 SINE MIR 121 202 -6 329 310 54 0 chr1 174206050 174206179 -107987485 - L2 LINE L2 0 3272 3137 298 321 97 6 chr1 174207456 174207621 -107986043 - MIR SINE MIR -70 192 13 557 116 53 21 chr1 174207948 174208043 -107985621 + MER4A LTR ERV1 1 98 -566 1674 142 215 24 chr1 174208043 174208382 -107985282 + MER4A LTR ERV1 261 664 0 1121 205 46 0 chr1 174208391 174208650 -107985014 + L1MC3 LINE L1 7348 7618 -167 788 178 6 55 chr1 174208650 174208813 -107984851 - Tigger2 DNA MER2_type 0 2718 2564 1316 129 0 5 chr1 174208814 174209023 -107984641 - Tigger2 DNA MER2_type -2510 208 1 334 211 28 0 chr1 174209023 174209094 -107984570 + L1MC3 LINE L1 7622 7694 -91 370 215 75 0 chr1 174209132 174209225 -107984439 + L1MC3 LINE L1 7664 7763 -22 272 276 87 39 chr1 174209273 174209559 -107984105 + L1ME LINE L1 4546 4845 -1301 23 54 0 0 chr1 174209565 174209602 -107984062 + AT_rich Low_complexity Low_complexity 1 37 0 458 247 126 48 chr1 174209860 174210178 -107983486 + L1ME LINE L1 5254 5585 -536 441 322 85 0 chr1 174210186 174210397 -107983267 - MIR SINE MIR 0 262 34 264 293 36 36 chr1 174210438 174210578 -107983086 + L1ME LINE L1 5638 5777 -344 524 113 47 38 chr1 174210719 174210825 -107982839 - L1MA8 LINE L1 -4 6287 6181 28 79 0 0 chr1 174210931 174210994 -107982670 + AT_rich Low_complexity Low_complexity 1 63 0 312 279 33 0 chr1 174211696 174211818 -107981846 + MIR SINE MIR 126 251 -11 344 333 8 0 chr1 174212449 174212569 -107981095 + MIR SINE MIR 71 191 -71 260 326 7 49 chr1 174212852 174212996 -107980668 + L2 LINE L2 2702 2839 -475 313 323 160 27 chr1 174213047 174213341 -107980323 + L2 LINE L2 2937 3269 -3 625 210 85 11 chr1 174213947 174214123 -107979541 + MIR SINE MIR 63 251 -11 220 210 12 99 chr1 174214195 174214276 -107979388 + L3 LINE CR1 1298 1371 -206 339 288 51 27 chr1 174214311 174214334 -107979330 + L1MC/D LINE L1 5621 5642 -513 2513 66 0 10 chr1 174214334 174214638 -107979026 - AluY SINE Alu -10 301 1 339 288 51 27 chr1 174214638 174214815 -107978849 + L1MC/D LINE L1 5642 5823 -332 666 264 46 9 chr1 174214840 174215056 -107978608 - MIR SINE MIR -32 230 7 23 0 0 0 chr1 174215341 174215364 -107978300 + AT_rich Low_complexity Low_complexity 1 23 0 186 265 118 10 chr1 174215650 174215752 -107977912 - L3 LINE CR1 -251 1326 1214 435 165 0 0 chr1 174215765 174215850 -107977814 + (CCA)n Simple_repeat Simple_repeat 1 85 0 251 292 0 14 chr1 174215853 174215925 -107977739 + (TGG)n Simple_repeat Simple_repeat 1 71 0 926 139 0 6 chr1 174215961 174216141 -107977523 + (TGG)n Simple_repeat Simple_repeat 1 179 0 868 164 0 12 chr1 174216153 174216924 -107976740 + (TGG)n Simple_repeat Simple_repeat 1 761 0 660 124 0 21 chr1 174216937 174217082 -107976582 + (TGG)n Simple_repeat Simple_repeat 3 144 0 705 169 0 16 chr1 174217128 174217311 -107976353 + (TGG)n Simple_repeat Simple_repeat 1 180 0 197 95 0 71 chr1 174217378 174217420 -107976244 + (ATGGTG)n Simple_repeat Simple_repeat 3 41 0 403 327 0 5 chr1 174217501 174217713 -107975951 + (TGG)n Simple_repeat Simple_repeat 1 210 0 195 129 0 0 chr1 174218864 174218895 -107974769 + (ATGGTG)n Simple_repeat Simple_repeat 3 33 0 288 333 11 73 chr1 174219100 174219277 -107974387 - L2 LINE L2 -5 3267 3102 310 211 13 26 chr1 174219787 174219863 -107973801 - MIR3 SINE MIR -19 189 115 301 228 132 35 chr1 174219884 174219998 -107973666 + L2 LINE L2 3179 3303 -10 498 343 93 4 chr1 174220031 174220267 -107973397 + MIR SINE MIR 6 262 0 260 295 0 0 chr1 174220992 174221104 -107972560 + (CGG)n Simple_repeat Simple_repeat 1 112 0 399 278 0 12 chr1 174221173 174221335 -107972329 + (CGG)n Simple_repeat Simple_repeat 1 160 0 559 227 0 8 chr1 174222749 174222868 -107970796 + L1MDa LINE L1 17 134 -6406 999 260 22 22 chr1 174222938 174223207 -107970457 + L1MDa LINE L1 132 400 -6140 1485 165 57 102 chr1 174223281 174223494 -107970170 + L1MDa LINE L1 966 1148 -5392 1969 128 20 7 chr1 174223494 174223665 -107969999 - AluSx SINE Alu -12 300 122 345 24 0 0 chr1 174223665 174223707 -107969957 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1969 128 20 7 chr1 174223707 174223831 -107969833 - AluSx SINE Alu -190 122 1 1485 165 57 102 chr1 174223831 174224077 -107969587 + L1MDa LINE L1 1148 1404 -5136 327 216 190 9 chr1 174224098 174224214 -107969450 + MLT1A2 LTR MaLR 178 314 -60 2945 272 80 38 chr1 174224246 174225215 -107968449 + L1MDa LINE L1 1408 2416 -4124 347 214 45 0 chr1 174225230 174225319 -107968345 - L1ME3A LINE L1 -8 6162 6070 242 267 207 0 chr1 174225322 174225438 -107968226 - L1ME3 LINE L1 -128 6034 5895 5395 147 51 17 chr1 174225442 174226253 -107967411 - L1MA8 LINE L1 -1 7250 6366 1142 197 27 117 chr1 174226253 174226654 -107967010 + MLT1A1 LTR MaLR 1 365 0 5395 147 51 17 chr1 174226654 174227306 -107966358 - L1MA8 LINE L1 -885 6366 5738 * 9329 213 69 38 chr1 174227289 174227692 -107965972 - L1MA8 LINE L1 -1962 5144 4755 1748 125 21 98 chr1 174227692 174228029 -107965635 - AluYb8 SINE Alu -7 311 1 9329 213 69 38 chr1 174228029 174230331 -107963333 - L1MA8 LINE L1 -2351 4755 2526 360 0 0 0 chr1 174230331 174230371 -107963293 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 9329 213 69 38 chr1 174230371 174232703 -107960961 - L1MA8 LINE L1 -4580 2526 266 1963 106 0 0 chr1 174232703 174232957 -107960707 - AluSq SINE Alu -59 254 1 237 231 13 51 chr1 174232957 174233035 -107960629 + LTR16A1 LTR ERVL 383 457 0 1936 232 74 39 chr1 174233074 174233778 -107959886 + MER31-int LTR ERV1 154 947 -3924 261 0 0 0 chr1 174233778 174233807 -107959857 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1936 232 74 39 chr1 174233807 174233984 -107959680 + MER31-int LTR ERV1 947 1116 -3755 2604 206 73 25 chr1 174234015 174234724 -107958940 + MER31-int LTR ERV1 3081 3823 -1113 1725 119 50 58 chr1 174234785 174235062 -107958602 - AluSx SINE Alu -37 275 1 343 333 11 73 chr1 174235362 174235539 -107958125 - L2 LINE L2 -5 3267 3102 335 211 13 26 chr1 174236049 174236125 -107957539 - MIR3 SINE MIR -19 189 115 336 228 132 35 chr1 174236146 174236260 -107957404 + L2 LINE L2 3179 3303 -10 261 320 27 56 chr1 174236288 174236413 -107957251 + MIR SINE MIR 1 123 -85 289 325 48 53 chr1 174236990 174237178 -107956486 - MIR SINE MIR -42 220 34 219 273 91 0 chr1 174237403 174237469 -107956195 + L2 LINE L2 3201 3272 0 519 233 67 13 chr1 174237837 174237987 -107955677 + MER113 DNA MER1_type? 2 159 -362 224 303 0 13 chr1 174238496 174238572 -107955092 + CT-rich Low_complexity Low_complexity 4 78 0 448 317 149 40 chr1 174238784 174239112 -107954552 - L2 LINE L2 0 3272 2909 205 294 137 0 chr1 174239168 174239270 -107954394 - L2 LINE L2 -477 2837 2722 378 284 11 38 chr1 174239488 174239671 -107953993 + (CATA)n Simple_repeat Simple_repeat 1 178 0 361 286 18 29 chr1 174239702 174239873 -107953791 + (CATATA)n Simple_repeat Simple_repeat 6 174 0 340 333 0 32 chr1 174239836 174240022 -107953642 + (CA)n Simple_repeat Simple_repeat 1 180 0 * 227 286 83 12 chr1 174241537 174241621 -107952043 - MIR SINE MIR -66 142 53 347 296 95 35 chr1 174242970 174243139 -107950525 + MIR3 SINE MIR 17 195 -13 422 329 70 0 chr1 174243291 174243449 -107950215 + MIR SINE MIR 20 188 -74 369 0 0 0 chr1 174244717 174244758 -107948906 + (CA)n Simple_repeat Simple_repeat 1 41 0 11629 203 30 35 chr1 174245185 174247957 -107945707 - L1PA13 LINE L1 -4007 2790 2 3022 259 62 32 chr1 174247976 174248682 -107944982 - L1M4 LINE L1 -2385 3997 3313 2367 97 0 0 chr1 174248682 174248982 -107944682 + AluY SINE Alu 1 300 -11 3022 259 62 32 chr1 174248982 174250068 -107943596 - L1M4 LINE L1 -3069 3313 2108 1219 127 73 36 chr1 174250082 174250302 -107943362 + AluSg/x SINE Alu 83 310 0 1634 262 53 10 chr1 174250317 174250948 -107942716 - L1M4 LINE L1 -4292 2092 1338 1349 225 22 22 chr1 174250922 174251286 -107942378 - L1MC3 LINE L1 -1833 6188 5825 * 251 211 110 46 chr1 174252280 174252389 -107941275 - MIR SINE MIR -10 252 137 238 238 48 67 chr1 174252841 174252946 -107940718 - L1ME4a LINE L1 -40 6081 5979 21 36 0 0 chr1 174253003 174253031 -107940633 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr1 174253510 174253549 -107940115 + (TG)n Simple_repeat Simple_repeat 1 39 0 249 239 0 0 chr1 174254245 174254291 -107939373 + polypyrimidine Low_complexity Low_complexity 1 46 0 239 293 40 13 chr1 174255161 174255236 -107938428 - MIR SINE MIR -87 121 45 279 133 0 0 chr1 174257451 174257496 -107936168 + (CACCAT)n Simple_repeat Simple_repeat 1 45 0 1141 65 0 0 chr1 174257589 174257728 -107935936 - L1PA4 LINE L1 -3 6152 6014 4162 180 18 16 chr1 174257738 174258559 -107935105 - L1MA4A LINE L1 -6 6297 5475 * 10747 198 31 14 chr1 174258543 174260145 -107933519 - L1PA13 LINE L1 -4 6810 5236 2320 114 0 0 chr1 174260145 174260453 -107933211 - AluY SINE Alu -3 308 1 10747 198 31 14 chr1 174260453 174260938 -107932726 - L1PA13 LINE L1 -1578 5236 4761 3122 193 28 89 chr1 174260938 174261912 -107931752 + LTR5 LTR ERVK 2 915 -54 10747 198 31 14 chr1 174261912 174262925 -107930739 - L1PA13 LINE L1 -2053 4761 3676 1226 143 0 0 chr1 174262940 174263122 -107930542 - AluY SINE Alu -37 274 93 10976 233 35 25 chr1 174263122 174266746 -107926918 - L1PA13 LINE L1 -3131 3666 1 2232 256 69 42 chr1 174266763 174267846 -107925818 - L1M4c LINE L1 -2384 4722 3610 499 154 48 0 chr1 174267852 174267956 -107925708 - L1M4c LINE L1 -3940 3168 3060 510 214 69 12 chr1 174267989 174268162 -107925502 - L1M4c LINE L1 -4105 3003 2821 1105 159 43 64 chr1 174268166 174268399 -107925265 + AluSg/x SINE Alu 83 310 0 553 243 7 0 chr1 174268436 174268580 -107925084 - L1M4c LINE L1 -4318 2790 2646 5676 221 135 20 chr1 174318623 174320568 -107873096 - L1M4c LINE L1 -4601 2436 266 1963 106 0 0 chr1 174320568 174320822 -107872842 - AluSq SINE Alu -59 254 1 237 231 13 51 chr1 174320822 174320900 -107872764 + LTR16A1 LTR ERVL 383 457 0 1966 231 75 38 chr1 174320939 174321642 -107872022 + MER65A-int LTR ERV1 154 948 -3923 261 0 0 0 chr1 174321642 174321671 -107871993 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1966 231 75 38 chr1 174321671 174321847 -107871817 + MER65A-int LTR ERV1 948 1116 -3755 2642 206 72 25 chr1 174321878 174322588 -107871076 + MER65A-int LTR ERV1 3081 3823 -1113 1725 119 50 58 chr1 174322649 174322926 -107870738 - AluSx SINE Alu -37 275 1 1965 238 65 0 chr1 174323018 174323446 -107870218 + MER65A-int LTR ERV1 3604 4059 -812 1963 234 15 19 chr1 174323448 174323913 -107869751 + MER65A-int LTR ERV1 4401 4863 -8 2307 112 102 11 chr1 174323919 174324293 -107869371 + MER65A LTR ERV1 38 445 0 1635 185 55 25 chr1 174324452 174324637 -107869027 + MLT1A2 LTR MaLR 1 179 -195 279 0 0 0 chr1 174324637 174324668 -107868996 + (TC)n Simple_repeat Simple_repeat 1 31 0 1635 185 55 25 chr1 174324668 174324845 -107868819 + MLT1A2 LTR MaLR 179 374 0 23 0 0 0 chr1 174325085 174325108 -107868556 + AT_rich Low_complexity Low_complexity 1 23 0 201 299 93 10 chr1 174325140 174325237 -107868427 + MIR SINE MIR 18 122 -86 282 115 0 0 chr1 174325792 174325844 -107867820 + (T)n Simple_repeat Simple_repeat 1 52 0 7330 10 0 0 chr1 174325846 174326654 -107867010 - L1HS LINE L1 -2 6153 5346 3763 23 0 0 chr1 174326651 174327090 -107866574 + L1HS LINE L1 4891 5329 -817 * 217 309 0 15 chr1 174327219 174327287 -107866377 - MIR SINE MIR -56 152 86 275 304 114 46 chr1 174327808 174328045 -107865619 + L2 LINE L2 2024 2276 -1038 193 229 66 16 chr1 174328011 174328072 -107865592 - L2 LINE L2 -90 3223 3160 * 190 330 110 9 chr1 174328335 174328444 -107865220 - L2 LINE L2 -352 2962 2843 231 262 43 85 chr1 174328769 174328910 -107864754 - MIR SINE MIR -11 251 117 395 336 86 20 chr1 174329081 174329325 -107864339 - L2 LINE L2 -1006 2308 2049 7307 38 1 0 chr1 174329325 174330218 -107863446 - L1P LINE L1 -2994 3152 2259 2240 110 0 7 chr1 174330417 174330718 -107862946 - AluSx SINE Alu -13 299 1 3808 198 60 25 chr1 174331094 174331341 -107862323 + L1MC/D LINE L1 4158 4395 -2056 977 125 0 0 chr1 174331341 174331474 -107862190 + FLAM_C SINE Alu 1 128 -5 3808 198 60 25 chr1 174331474 174332716 -107860948 + L1MC/D LINE L1 4395 5706 -745 2869 176 92 9 chr1 174332738 174333000 -107860664 - L1MC3 LINE L1 -459 7326 7087 195 100 0 0 chr1 174333000 174333030 -107860634 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2869 176 92 9 chr1 174333030 174333351 -107860313 - L1MC3 LINE L1 -698 7087 6694 1259 134 10 0 chr1 174333349 174333543 -107860121 + L1MC3 LINE L1 7329 7524 -261 * 214 301 94 84 chr1 174333591 174334069 -107859595 - L2 LINE L2 -1209 2105 1623 1839 240 103 11 chr1 174334077 174334868 -107858796 - L2 LINE L2 -4 3309 2444 409 283 63 26 chr1 174335073 174335235 -107858429 - L2 LINE L2 -886 2428 2257 2272 98 0 3 chr1 174335235 174335532 -107858132 + AluSx SINE Alu 1 296 -16 409 283 63 26 chr1 174335532 174335560 -107858104 - L2 LINE L2 -1057 2257 2231 194 241 69 23 chr1 174336306 174336393 -107857271 - MIR3 SINE MIR 0 208 118 412 308 71 86 chr1 174336394 174336745 -107856919 - L2 LINE L2 0 3272 2927 310 309 0 27 chr1 174337820 174337930 -107855734 + MIR SINE MIR 125 231 -31 1950 122 0 41 chr1 174337987 174338282 -107855382 + AluJb SINE Alu 25 307 -5 286 290 183 28 chr1 174338289 174338541 -107855123 + L3 LINE CR1 705 995 -582 231 315 72 0 chr1 174338615 174338726 -107854938 + L3 LINE CR1 993 1111 -466 409 296 75 31 chr1 174338774 174338933 -107854731 + MIR SINE MIR 60 225 -37 241 333 93 74 chr1 174339213 174339471 -107854193 - L2 LINE L2 -15 3257 2995 240 293 0 52 chr1 174341536 174341652 -107852012 - MIR SINE MIR -34 228 119 2196 98 3 3 chr1 174341735 174342021 -107851643 + AluSc SINE Alu 1 286 -23 207 0 0 0 chr1 174342022 174342045 -107851619 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 2176 117 0 0 chr1 174342141 174342432 -107851232 - AluSx SINE Alu -21 291 1 4823 125 91 27 chr1 174343145 174343992 -107849672 + MER4D LTR ERV1 3 903 0 329 343 70 7 chr1 174344494 174344637 -107849027 - L2 LINE L2 0 3272 3121 210 143 0 0 chr1 174344801 174344836 -107848828 + (GGGAGA)n Simple_repeat Simple_repeat 1 35 0 808 119 28 0 chr1 174344859 174345002 -107848662 + GA-rich Low_complexity Low_complexity 3 149 0 2160 88 44 3 chr1 174345745 174346040 -107847624 + AluY SINE Alu 1 307 -4 228 167 0 0 chr1 174346659 174346707 -107846957 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 298 295 163 9 chr1 174346782 174347114 -107846550 + L2 LINE L2 1839 2221 -1093 325 361 128 10 chr1 174347226 174347539 -107846125 + L2 LINE L2 2512 2861 -453 607 201 29 178 chr1 174347823 174348295 -107845369 + MER65A LTR ERV1 2 390 -55 1883 154 3 23 chr1 174348295 174348601 -107845063 - AluJo SINE Alu -12 300 1 607 201 29 178 chr1 174348601 174348650 -107845014 + MER65A LTR ERV1 390 445 0 216 191 0 0 chr1 174349295 174349342 -107844322 - MIR SINE MIR -112 150 104 672 222 66 30 chr1 174350802 174351000 -107842664 + L2 LINE L2 3108 3312 -1 259 294 22 11 chr1 174351755 174351847 -107841817 - MIR SINE MIR -49 213 121 198 0 0 0 chr1 174353582 174353604 -107840060 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2248 125 0 0 chr1 174355364 174355675 -107837989 - AluY SINE Alu 0 311 1 248 276 0 0 chr1 174357227 174357285 -107836379 + MIR SINE MIR 91 148 -60 286 339 90 20 chr1 174357642 174357887 -107835777 - MIR SINE MIR 0 262 1 451 303 101 5 chr1 174358646 174358864 -107834800 - MIR SINE MIR 0 262 24 194 244 0 0 chr1 174358917 174358958 -107834706 + MIR3 SINE MIR 144 184 -24 216 0 0 0 chr1 174359984 174360008 -107833656 + (CA)n Simple_repeat Simple_repeat 2 25 0 36582 86 12 40 chr1 174361627 174367947 -107825717 - L1PA6 LINE L1 -5 6149 12 1731 186 20 0 chr1 174367991 174368297 -107825367 - AluJb SINE Alu 0 312 1 1754 214 21 32 chr1 174368332 174368710 -107824954 + MLT1E LTR MaLR 220 593 0 1289 174 13 0 chr1 174368871 174369107 -107824557 + L1MA8 LINE L1 6030 6268 -23 324 197 105 0 chr1 174369959 174370074 -107823590 + L1MB3 LINE L1 6045 6181 -2 808 289 65 40 chr1 174370077 174370582 -107823082 + HAL1b LINE L1 80 597 -751 651 200 0 9 chr1 174370582 174370697 -107822967 + MSTD LTR MaLR 1 114 -282 * 985 204 6 0 chr1 174370689 174370865 -107822799 + MSTD LTR MaLR 220 396 0 243 235 0 0 chr1 174370945 174370996 -107822668 + HAL1b LINE L1 685 735 -613 546 254 74 56 chr1 174371032 174371589 -107822075 + L1MC/D LINE L1 4893 5462 -743 818 301 40 8 chr1 174371631 174372006 -107821658 - L1M4 LINE L1 -867 5279 4893 1654 107 0 5 chr1 174372049 174372273 -107821391 + AluSg/x SINE Alu 86 308 -4 238 102 41 41 chr1 174372303 174372352 -107821312 + MLT1I LTR MaLR 98 146 -263 280 188 31 0 chr1 174372514 174372578 -107821086 + MLT1F1 LTR MaLR 489 554 -13 1874 220 104 84 chr1 174372595 174372641 -107821023 + L1MC5 LINE L1 6993 7037 -924 309 26 0 0 chr1 174372641 174372679 -107820985 + (TG)n Simple_repeat Simple_repeat 2 39 0 1874 220 104 84 chr1 174372679 174373174 -107820490 + L1MC5 LINE L1 7037 7562 -399 2132 145 0 0 chr1 174373174 174373484 -107820180 + AluSx SINE Alu 1 310 -2 1874 220 104 84 chr1 174373484 174373844 -107819820 + L1MC5 LINE L1 7562 7913 -48 667 269 60 78 chr1 174373868 174374315 -107819349 - L1M4 LINE L1 -2502 3644 3206 2949 140 38 0 chr1 174374340 174374790 -107818874 + L1P LINE L1 11 477 -5669 1477 228 68 86 chr1 174374824 174375593 -107818071 - L1MC5 LINE L1 -726 7235 6476 845 289 69 61 chr1 174375742 174376515 -107817149 - HAL1b LINE L1 -511 837 59 295 333 51 32 chr1 174377525 174377681 -107815983 - L2 LINE L2 0 3272 3114 978 183 69 15 chr1 174378587 174378789 -107814875 + MER20 DNA MER1_type 3 215 -4 683 152 0 0 chr1 174379006 174379111 -107814553 + U6 snRNA snRNA 1 105 -2 12596 182 24 68 chr1 174379115 174382903 -107810761 + L1PB4 LINE L1 1903 5856 -300 1684 92 0 0 chr1 174382903 174383109 -107810555 + AluSc SINE Alu 72 277 -32 387 73 0 0 chr1 174383109 174383164 -107810500 + (TAAA)n Simple_repeat Simple_repeat 1 55 0 12596 182 24 68 chr1 174383164 174383437 -107810227 + L1PB4 LINE L1 5855 6138 -18 228 67 0 0 chr1 174383437 174383467 -107810197 + (TG)n Simple_repeat Simple_repeat 2 31 0 12596 182 24 68 chr1 174383467 174383520 -107810144 + L1PB4 LINE L1 6138 5797 -359 1995 128 4 0 chr1 174383520 174383794 -107809870 + AluSg SINE Alu 35 309 -1 12596 182 24 68 chr1 174383794 174384140 -107809524 + L1PB4 LINE L1 5796 6156 0 438 204 11 53 chr1 174384909 174385071 -107808593 + MER63 DNA MER1_type 679 1062 0 389 310 149 50 chr1 174385120 174386415 -107807249 + L2 LINE L2 1843 3264 -8 416 253 129 34 chr1 174388592 174388770 -107804894 + L2 LINE L2 3118 3312 -1 494 234 64 7 chr1 174389494 174389635 -107804029 - MIR SINE MIR -36 226 78 248 297 47 54 chr1 174389750 174389898 -107803766 + MIR SINE MIR 59 205 -57 228 281 31 88 chr1 174390172 174390364 -107803300 - L2 LINE L2 -1150 2164 1984 339 309 88 46 chr1 174391036 174391103 -107802561 - LTR16C LTR ERVL -10 481 418 4109 102 23 2 chr1 174391103 174391671 -107801993 + LTR19B LTR ERV1 1 580 0 339 309 88 46 chr1 174391671 174391865 -107801799 - LTR16C LTR ERVL -73 418 209 533 271 116 14 chr1 174394198 174394405 -107799259 - MIR SINE MIR -14 248 21 1482 115 138 19 chr1 174394452 174394738 -107798926 - AluSg1 SINE Alu 0 309 1 2039 118 0 17 chr1 174394750 174395071 -107798593 - AluSc SINE Alu 0 316 1 610 153 0 9 chr1 174395083 174395194 -107798470 - AluJb SINE Alu -2 310 201 314 277 57 50 chr1 174395579 174395720 -107797944 - MIR SINE MIR -14 248 107 262 316 18 77 chr1 174397785 174397953 -107795711 + L2 LINE L2 3148 3305 -8 1011 124 11 6 chr1 174397953 174398131 -107795533 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 4866 180 99 77 chr1 174398240 174398928 -107794736 + Charlie1a DNA MER1_type 1 673 -2088 2092 121 0 0 chr1 174398928 174399247 -107794417 - AluY SINE Alu 0 319 1 4866 180 99 77 chr1 174399247 174399977 -107793687 + Charlie1a DNA MER1_type 673 1451 -4 202 364 143 21 chr1 174400248 174400388 -107793276 - L2 LINE L2 0 3272 3116 400 286 74 6 chr1 174401252 174401427 -107792237 - MIR3 SINE MIR -4 204 18 2225 105 0 7 chr1 174401608 174401904 -107791760 - AluSg SINE Alu -16 294 1 270 290 97 0 chr1 174402488 174402612 -107791052 - L2 LINE L2 0 3272 3137 260 309 155 11 chr1 174402719 174402900 -107790764 + Charlie8 DNA MER1_type 59 265 -2152 227 275 0 72 chr1 174403282 174403351 -107790313 - L2 LINE L2 0 3272 3209 367 164 15 30 chr1 174403442 174403509 -107790155 + L2 LINE L2 3248 3313 0 502 215 163 0 chr1 174403536 174403671 -107789993 - MIR SINE MIR -30 232 76 209 263 71 20 chr1 174404187 174404286 -107789378 - L2 LINE L2 -212 3060 2957 423 303 79 24 chr1 174404633 174404798 -107788866 + MIR3 SINE MIR 32 205 -3 482 291 110 55 chr1 174406018 174406310 -107787354 - L2 LINE L2 -10 3303 2996 2439 104 0 0 chr1 174407085 174407392 -107786272 - AluSp SINE Alu -6 307 1 330 277 136 14 chr1 174409485 174409631 -107784033 - MIR3 SINE MIR 0 208 43 402 271 16 47 chr1 174410165 174410294 -107783370 + L2 LINE L2 3173 3297 -16 481 239 150 56 chr1 174410543 174410777 -107782887 - L3 LINE CR1 -44 1533 1278 197 305 144 77 chr1 174410825 174411110 -107782554 + L2 LINE L2 2897 3200 -72 180 0 0 0 chr1 174411506 174411526 -107782138 + (A)n Simple_repeat Simple_repeat 1 20 0 282 295 98 95 chr1 174411974 174412425 -107781239 - L2 LINE L2 -1 3271 2820 212 338 0 38 chr1 174413413 174413546 -107780118 + CT-rich Low_complexity Low_complexity 3 130 0 260 287 99 0 chr1 174413693 174413794 -107779870 + L3 LINE CR1 1149 1259 -318 292 264 234 30 chr1 174413985 174414152 -107779512 - L2 LINE L2 -4 3309 3109 442 336 27 0 chr1 174414246 174414395 -107779269 - L2 LINE L2 -540 2774 2622 221 143 0 0 chr1 174414431 174414466 -107779198 - L2 LINE L2 -94 3178 3144 208 231 0 19 chr1 174414592 174414644 -107779020 + G-rich Low_complexity Low_complexity 2 52 0 198 236 36 0 chr1 174415262 174415317 -107778347 + L2 LINE L2 3216 3272 0 484 268 42 0 chr1 174415578 174415720 -107777944 - MIR3 SINE MIR -30 178 31 213 357 71 21 chr1 174416034 174416174 -107777490 - L3b LINE CR1 -122 1461 1315 845 280 4 81 chr1 174416236 174416314 -107777350 - MIR SINE MIR -8 254 172 2465 77 3 3 chr1 174416314 174416625 -107777039 + AluY SINE Alu 1 311 0 845 280 4 81 chr1 174416625 174416817 -107776847 - MIR SINE MIR -90 172 5 272 250 0 16 chr1 174416994 174417058 -107776606 - MIR SINE MIR -68 140 78 1986 85 18 7 chr1 174417546 174417828 -107775836 + LTR15 LTR ERV1 1 285 -208 334 260 63 15 chr1 174417822 174417947 -107775717 - MER33 DNA MER1_type -51 111 1 * 323 205 24 24 chr1 174417947 174418030 -107775634 - L2 LINE L2 -711 2603 2521 611 128 0 28 chr1 174418063 174418172 -107775492 + LTR15 LTR ERV1 382 487 -6 259 316 107 87 chr1 174418501 174418533 -107775131 - L2 LINE L2 0 3272 3242 1494 164 33 95 chr1 174418533 174418922 -107774742 - MLT1A1 LTR MaLR 0 365 1 259 316 107 87 chr1 174418922 174419085 -107774579 - L2 LINE L2 -30 3242 3073 198 278 111 0 chr1 174419516 174419570 -107774094 + L2 LINE L2 3210 3269 -44 * 331 220 16 19 chr1 174419561 174419692 -107773972 + L2 LINE L2 2430 2603 -711 755 198 180 7 chr1 174419692 174419976 -107773688 + MER33 DNA MER1_type 1 319 -5 1067 305 66 13 chr1 174419989 174420502 -107773162 + L2 LINE L2 2619 3156 -157 323 196 69 39 chr1 174420518 174420629 -107773035 - L1MC4 LINE L1 -1339 6983 1995 985 194 12 0 chr1 174420630 174420790 -107772874 - FAM SINE Alu -13 162 1 311 220 113 75 chr1 174420790 174420913 -107772751 + L2 LINE L2 3147 3279 -34 192 77 0 0 chr1 174420913 174420939 -107772725 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 311 220 113 75 chr1 174420939 174420974 -107772690 + L2 LINE L2 3279 3311 -2 240 267 107 0 chr1 174421616 174421691 -107771973 - MIR SINE MIR -60 148 66 2512 60 0 16 chr1 174422410 174422748 -107770916 - AluY SINE Alu 0 311 1 1030 250 35 21 chr1 174423625 174423909 -107769755 - MER70A LTR ERVL 0 472 185 1231 138 15 0 chr1 174423945 174424148 -107769516 - MER70-int LTR ERVL 0 5023 4818 531 199 175 36 chr1 174424148 174424314 -107769350 - MER4C LTR ERV1 0 465 277 2272 86 6 138 chr1 174424335 174424821 -107768843 - MER4A LTR ERV1 -242 422 1 316 111 19 0 chr1 174424822 174424876 -107768788 - MER70-int LTR ERVL -203 4820 4766 2025 79 0 0 chr1 174424880 174425132 -107768532 + AluY SINE Alu 56 307 -4 3126 254 14 7 chr1 174425132 174426020 -107767644 + L1PA16 LINE L1 3532 4425 -3140 2265 63 42 3 chr1 174427572 174427857 -107765807 + AluY SINE Alu 1 296 -15 9995 187 26 13 chr1 174428370 174428408 -107765256 + L1PA16 LINE L1 4411 4447 -3138 1360 32 0 0 chr1 174428408 174428565 -107765099 + L1PA5 LINE L1 5991 6147 -7 9995 187 26 13 chr1 174428565 174431645 -107762019 + L1PA16 LINE L1 4447 7567 -18 702 178 7 37 chr1 174431659 174431794 -107761870 - MER70-int LTR ERVL -258 4765 4635 1101 215 19 0 chr1 174483354 174483610 -107710054 + L1M4 LINE L1 4837 5100 -1046 * 1224 266 102 17 chr1 174483586 174484108 -107709556 - L1M4 LINE L1 -1074 5072 4507 342 313 121 14 chr1 174484108 174484352 -107709312 + L2 LINE L2 2731 2999 -314 356 164 0 0 chr1 174484358 174484399 -107709265 - MER4D LTR ERV1 -42 861 818 1873 103 0 0 chr1 174484399 174484662 -107709002 + AluSx SINE Alu 44 306 -6 356 164 0 0 chr1 174484662 174484675 -107708989 - MER4D LTR ERV1 -84 819 807 2779 147 31 12 chr1 174484961 174485443 -107708221 + MER4E LTR ERV1 1 491 -288 1693 246 21 41 chr1 174485945 174486412 -107707252 - LTR16B LTR ERVL 0 464 7 1432 318 110 38 chr1 174486536 174487601 -107706063 - MER70-int LTR ERVL -381 5383 4242 3709 164 102 53 chr1 174487604 174488700 -107704964 + MER11B LTR ERVK 1 1236 0 2401 317 61 37 chr1 174488706 174490042 -107703622 - MER70-int LTR ERVL -1455 4199 2832 216 216 0 0 chr1 174490926 174490977 -107702687 + (CA)n Simple_repeat Simple_repeat 2 52 0 302 198 99 54 chr1 174491358 174491469 -107702195 - MIR3 SINE MIR -78 130 15 819 195 7 0 chr1 174491498 174491652 -107702012 - AluJo SINE Alu -155 157 3 323 319 31 44 chr1 174492005 174492165 -107701499 - MIR SINE MIR 0 262 105 1135 54 60 0 chr1 174492169 174492318 -107701346 + AluY SINE Alu 2 159 -152 684 69 0 0 chr1 174492318 174492405 -107701259 + AluSg/x SINE Alu 209 295 -17 300 274 39 10 chr1 174492411 174492513 -107701151 - MIR SINE MIR -155 107 3 1649 183 0 13 chr1 174492790 174493096 -107700568 + AluJo SINE Alu 1 302 -10 1796 219 74 36 chr1 174493147 174493222 -107700442 + MER69 DNA AcHobo 1908 1979 -547 1564 174 17 7 chr1 174493222 174493515 -107700149 + AluJb SINE Alu 1 296 -16 1796 219 74 36 chr1 174493515 174494023 -107699641 + MER69 DNA AcHobo 1979 2513 -13 340 321 0 0 chr1 174494077 174494183 -107699481 + L2 LINE L2 2950 3055 -217 227 277 0 84 chr1 174494432 174494515 -107699149 + MIR SINE MIR 74 149 -59 811 217 15 98 chr1 174495430 174495666 -107697998 + MIR SINE MIR 2 223 -39 414 314 20 20 chr1 174495675 174495828 -107697836 + L2 LINE L2 3161 3313 0 344 203 0 0 chr1 174495927 174495986 -107697678 - L2 LINE L2 -1 3312 3254 201 254 0 34 chr1 174496082 174496141 -107697523 + (CCCCAG)n Simple_repeat Simple_repeat 1 57 0 3785 274 102 82 chr1 174496192 174497464 -107696200 - HAL1 LINE L1 -1 2506 1261 1935 141 3 0 chr1 174497464 174497754 -107695910 - AluSx SINE Alu -21 291 1 3785 274 102 82 chr1 174497754 174497918 -107695746 - HAL1 LINE L1 -1246 1261 1102 501 32 16 0 chr1 174497918 174497981 -107695683 + AluSp/q SINE Alu 232 295 -18 3785 274 102 82 chr1 174497981 174498185 -107695479 - HAL1 LINE L1 -1405 1102 904 471 186 127 17 chr1 174498185 174498303 -107695361 - FLAM_A SINE Alu -2 131 1 3785 274 102 82 chr1 174498303 174498727 -107694937 - HAL1 LINE L1 -1603 904 336 681 249 25 72 chr1 174498784 174498906 -107694758 + MIR SINE MIR 37 144 -118 2066 113 0 17 chr1 174498906 174499206 -107694458 + AluSx SINE Alu 1 295 -17 681 249 25 72 chr1 174499206 174499320 -107694344 + MIR SINE MIR 144 262 0 518 155 10 62 chr1 174499450 174499547 -107694117 + MER81 DNA DNA 22 113 -1 236 337 0 0 chr1 174499890 174499973 -107693691 + L2 LINE L2 3189 3271 -1 620 164 75 50 chr1 174500636 174500795 -107692869 - LTR36 LTR ERV1 -448 163 1 605 258 13 13 chr1 174500817 174500972 -107692692 - MLT1D LTR MaLR -246 259 105 266 267 125 0 chr1 174502220 174502340 -107691324 + L1 LINE L1 4304 4438 -1708 231 288 40 40 chr1 174502593 174502718 -107690946 + L1 LINE L1 4887 5011 -1135 1868 122 0 4 chr1 174502735 174503014 -107690650 + AluSq SINE Alu 1 278 -35 849 174 0 0 chr1 174503158 174503296 -107690368 + FRAM SINE Alu 9 146 -30 391 175 0 0 chr1 174503323 174503386 -107690278 - AluSg/x SINE Alu -54 248 186 342 209 55 11 chr1 174503388 174503479 -107690185 - L1M4 LINE L1 -1048 5098 5004 276 167 115 21 chr1 174503715 174503811 -107689853 + L1MA4 LINE L1 5930 6034 -266 * 1241 139 25 147 chr1 174503804 174504172 -107689492 + L1MA4 LINE L1 5967 6289 -11 411 161 269 0 chr1 174504187 174504280 -107689384 - MER66A LTR ERV1 -77 401 284 445 273 61 8 chr1 174504739 174504871 -107688793 + MIR SINE MIR 14 152 -110 2332 72 0 0 chr1 174504878 174505168 -107688496 + AluSx SINE Alu 1 290 -22 984 231 0 15 chr1 174505169 174505368 -107688296 - MIR SINE MIR -54 208 13 239 70 0 100 chr1 174505468 174505568 -107688096 + (GAGTG)n Simple_repeat Simple_repeat 5 94 0 232 250 40 113 chr1 174506347 174506471 -107687193 - MIR SINE MIR -128 134 20 * 326 287 23 62 chr1 174506469 174506598 -107687066 - MIR SINE MIR -67 141 18 296 266 18 36 chr1 174507589 174507730 -107685934 + MLT1L LTR MaLR 100 303 -312 233 87 0 43 chr1 174507768 174507814 -107685850 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 2045 118 0 3 chr1 174507819 174508106 -107685558 - AluSx SINE Alu -22 290 5 2010 137 10 0 chr1 174508696 174509002 -107684662 - AluSx SINE Alu -3 309 1 334 240 0 27 chr1 174510352 174510427 -107683237 - HAL1 LINE L1 0 2507 2435 2838 70 3 3 chr1 174510439 174510860 -107682804 + L1PA8 LINE L1 5801 6221 0 369 249 104 60 chr1 174510861 174511110 -107682554 - HAL1 LINE L1 -83 2424 2165 317 244 35 93 chr1 174511163 174511335 -107682329 - HAL1b LINE L1 -441 907 746 2140 152 25 3 chr1 174511533 174511888 -107681776 + MLT1A1 LTR MaLR 1 363 -2 1368 140 14 5 chr1 174511933 174512147 -107681517 - AluJo SINE Alu -11 301 86 1619 169 24 24 chr1 174512623 174512913 -107680751 + AluJo SINE Alu 8 297 -15 225 186 220 0 chr1 174513599 174513658 -107680006 - MER103 DNA DNA -11 155 84 234 295 0 13 chr1 174513658 174513736 -107679928 - LTR67 LTR ERVL 0 557 481 2024 141 3 12 chr1 174514474 174514794 -107678870 - 7SLRNA srpRNA srpRNA -3 317 1 874 95 7 15 chr1 174514794 174514931 -107678733 - AluJo SINE Alu -176 136 1 2159 94 3 0 chr1 174515249 174515546 -107678118 - AluSx SINE Alu -14 298 1 462 328 123 55 chr1 174515567 174516006 -107677658 - HAL1b LINE L1 -531 817 349 504 0 0 0 chr1 174516389 174516445 -107677219 + (TTAAA)n Simple_repeat Simple_repeat 5 60 0 2225 85 0 20 chr1 174516860 174517165 -107676499 + AluSg SINE Alu 1 299 -11 870 219 16 5 chr1 174517735 174517922 -107675742 + MER5A DNA MER1_type 1 189 0 230 256 33 56 chr1 174518147 174518196 -107675468 - MIR SINE MIR -70 192 144 2819 145 9 9 chr1 174518196 174518624 -107675040 + MSTC LTR MaLR 1 428 0 230 256 33 56 chr1 174518624 174518664 -107675000 - MIR SINE MIR -118 144 105 321 254 109 45 chr1 174518746 174518856 -107674808 + MIR SINE MIR 33 149 -113 2122 110 3 7 chr1 174519158 174519457 -107674207 + AluSx SINE Alu 1 298 -14 1190 32 5 38 chr1 174519457 174519521 -107674143 + (GAAA)n Simple_repeat Simple_repeat 1 241 0 1190 32 5 38 chr1 174519521 174519707 -107673957 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 952 229 0 0 chr1 174519722 174519897 -107673767 + FAM SINE Alu 1 175 0 258 271 102 34 chr1 174520071 174520189 -107673475 - MLT1K LTR MaLR -277 311 186 2997 59 0 0 chr1 174520408 174520763 -107672901 - THE1A LTR MaLR 0 355 1 325 288 81 5 chr1 174521874 174522022 -107671642 - MIR SINE MIR -62 146 2 2126 104 0 22 chr1 174523098 174523416 -107670248 + AluY SINE Alu 1 311 0 2885 35 3 3 chr1 174523632 174523977 -107669687 + SVA Other Other 1040 1384 -2 1530 162 6 105 chr1 174524327 174524660 -107669004 + AluJo SINE Alu 1 300 -2 872 120 0 7 chr1 174524679 174524821 -107668843 + (GAAA)n Simple_repeat Simple_repeat 1 141 0 1628 192 10 0 chr1 174524827 174525134 -107668530 + AluJb SINE Alu 1 310 -2 486 263 215 29 chr1 174525173 174525378 -107668286 - MIR SINE MIR -6 256 14 600 144 7 137 chr1 174525556 174525709 -107667955 - FLAM_A SINE Alu 0 133 1 645 307 78 66 chr1 174526199 174526782 -107666882 - L2 LINE L2 0 3272 2686 23 0 0 0 chr1 174527701 174527724 -107665940 + AT_rich Low_complexity Low_complexity 1 23 0 443 179 0 0 chr1 174527724 174527802 -107665862 - AluJ/FLAM SINE Alu -233 79 2 2073 108 0 3 chr1 174527993 174528290 -107665374 - AluSx SINE Alu -16 296 1 445 298 73 77 chr1 174528308 174528580 -107665084 + HAL1b LINE L1 1 271 -1077 1777 137 29 13 chr1 174528595 174528772 -107664892 - AluJb SINE Alu 0 312 126 2166 107 3 0 chr1 174528772 174529080 -107664584 - AluSx SINE Alu -3 309 1 1777 137 29 13 chr1 174529080 174529209 -107664455 - AluJb SINE Alu -186 126 1 282 226 24 48 chr1 174529212 174529296 -107664368 + HAL1b LINE L1 266 347 -1001 228 170 0 0 chr1 174529323 174529376 -107664288 + T-rich Low_complexity Low_complexity 1 53 0 1349 314 39 32 chr1 174529404 174530002 -107663662 + L1MEd LINE L1 74 675 -5444 397 223 124 128 chr1 174530050 174530242 -107663422 + L1M4 LINE L1 3356 3548 -2598 9868 23 5 157 chr1 174530242 174531833 -107661831 + SVA Other Other 53 1386 0 397 223 124 128 chr1 174531833 174531914 -107661750 + L1M4 LINE L1 3548 3628 -2518 800 254 114 9 chr1 174531939 174532159 -107661505 + MLT1J LTR MaLR 1 243 -268 324 271 17 8 chr1 174532212 174532330 -107661334 + MLT1J LTR MaLR 378 496 -15 682 262 77 77 chr1 174532352 174532688 -107660976 + L1M4 LINE L1 3658 3996 -2150 801 158 24 0 chr1 174532688 174532815 -107660849 - FLAM_C SINE Alu -3 130 1 682 262 77 77 chr1 174532815 174533013 -107660651 + L1M4 LINE L1 3995 4192 -1954 30 0 0 0 chr1 174533189 174533219 -107660445 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr1 174533234 174533266 -107660398 + AT_rich Low_complexity Low_complexity 1 32 0 342 55 0 0 chr1 174533272 174533321 -107660343 - L1PA6 LINE L1 -8 6146 6098 813 324 97 48 chr1 174533489 174533685 -107659979 + HAL1 LINE L1 840 1025 -1482 2114 98 0 4 chr1 174533685 174533951 -107659713 + AluSc SINE Alu 3 267 -42 194 0 0 37 chr1 174533953 174533980 -107659684 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 813 324 97 48 chr1 174533980 174534391 -107659273 + HAL1 LINE L1 1025 1480 -1027 1041 156 11 6 chr1 174534393 174534572 -107659092 - MER70A LTR ERVL 0 472 293 532 173 0 0 chr1 174534617 174534698 -107658966 - MER70B LTR ERVL -270 308 228 831 161 0 0 chr1 174534701 174534831 -107658833 + AluJo/FLAM SINE Alu 1 130 -172 2040 100 0 38 chr1 174534833 174535124 -107658540 + AluSx SINE Alu 1 280 -32 2149 126 0 40 chr1 174535716 174536041 -107657623 - AluSx SINE Alu 0 312 1 291 281 79 12 chr1 174536628 174536792 -107656872 - L1M4 LINE L1 -945 5201 5027 1753 166 14 17 chr1 174536792 174537123 -107656541 - AluJb SINE Alu 0 312 1 666 143 0 17 chr1 174537919 174538038 -107655626 - L1PA16 LINE L1 -4 6162 6046 302 122 0 0 chr1 174538059 174538108 -107655556 + L1 LINE L1 4757 4805 -1341 215 250 36 0 chr1 174539344 174539400 -107654264 - L2 LINE L2 -65 3207 3150 1951 155 10 7 chr1 174539441 174539751 -107653913 - AluJo SINE Alu -1 311 1 494 269 21 7 chr1 174539755 174539900 -107653764 - MIR SINE MIR -114 148 2 2357 59 0 55 chr1 174540031 174540338 -107653326 + AluSc SINE Alu 1 290 -19 634 181 69 54 chr1 174540437 174540641 -107653023 - ORSL DNA AcHobo -61 214 8 732 284 35 73 chr1 174541984 174542176 -107651488 + L1ME4a LINE L1 5476 5674 -447 2389 92 0 19 chr1 174542176 174542491 -107651173 + AluSg SINE Alu 1 309 -1 732 284 35 73 chr1 174542491 174542788 -107650876 + L1ME4a LINE L1 5674 5946 -175 2211 112 0 7 chr1 174542799 174543103 -107650561 + AluSx SINE Alu 1 302 -10 760 166 53 37 chr1 174543436 174543623 -107650041 - LTR68 LTR ERV1 -129 611 422 2295 125 3 0 chr1 174543625 174543936 -107649728 + AluSx SINE Alu 1 312 0 1854 126 94 6 chr1 174543962 174544304 -107649360 + L1MB2 LINE L1 5798 6169 -2 23 0 0 0 chr1 174544304 174544327 -107649337 + AT_rich Low_complexity Low_complexity 1 23 0 319 331 91 0 chr1 174544373 174544494 -107649170 + HAL1b LINE L1 1194 1325 -23 1761 195 3 3 chr1 174544568 174544866 -107648798 + AluJo SINE Alu 1 298 -14 371 123 0 0 chr1 174545209 174545266 -107648398 - MER4A LTR ERV1 0 664 608 2068 86 0 0 chr1 174545268 174545523 -107648141 + AluSg SINE Alu 2 256 -54 275 122 20 0 chr1 174545527 174545576 -107648088 + GA-rich Low_complexity Low_complexity 2 51 0 323 271 77 18 chr1 174545880 174546050 -107647614 + L1MEd LINE L1 59 238 -5881 4213 111 83 92 chr1 174546071 174547456 -107646208 + pTR5 LTR ERV1 66 2438 0 2146 118 3 3 chr1 174547467 174547756 -107645908 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr1 174547756 174547778 -107645886 + AT_rich Low_complexity Low_complexity 1 22 0 402 272 58 34 chr1 174547830 174548317 -107645347 + L1MEd LINE L1 2412 2958 -3171 2366 106 0 0 chr1 174548322 174548625 -107645039 + AluSx SINE Alu 1 303 -9 644 279 100 46 chr1 174548642 174548896 -107644768 + L1MEd LINE L1 2093 2365 -3764 2259 122 0 0 chr1 174548896 174549191 -107644473 + AluSx SINE Alu 1 295 -17 644 279 100 46 chr1 174549191 174549216 -107644448 + L1MEd LINE L1 2365 2387 -3742 382 227 72 0 chr1 174549247 174549344 -107644320 + L1MEd LINE L1 2933 3036 -3093 2145 121 17 0 chr1 174549352 174549650 -107644014 + AluSx SINE Alu 1 303 -9 301 119 0 52 chr1 174549667 174549735 -107643929 + FLAM SINE Alu 81 132 -1 352 103 15 29 chr1 174549735 174549803 -107643861 + (GAAA)n Simple_repeat Simple_repeat 3 69 0 1658 220 131 5 chr1 174549841 174550223 -107643441 + L1PA12 LINE L1 997 1426 -6155 1078 86 7 0 chr1 174550276 174550426 -107643238 + MER83 LTR ERV1 1 151 -297 2272 168 109 11 chr1 174550426 174550886 -107642778 - MER61D LTR ERV1 0 501 1 1690 129 16 23 chr1 174550886 174551189 -107642475 + MER83 LTR ERV1 148 448 0 8261 176 22 19 chr1 174551189 174552675 -107640989 + MER83-int LTR ERV1 12 1501 -2784 2029 109 0 35 chr1 174552675 174552958 -107640706 + AluSx SINE Alu 14 286 -26 180 97 0 0 chr1 174552958 174552989 -107640675 + (TA)n Simple_repeat Simple_repeat 2 32 0 4965 141 52 21 chr1 174552989 174553926 -107639738 + L1MA4 LINE L1 5334 6295 -5 2439 174 24 9 chr1 174553948 174554401 -107639263 + MER4D LTR ERV1 421 880 -23 912 150 0 27 chr1 174554401 174554548 -107639116 + FLAM_C SINE Alu 1 143 0 1859 171 0 10 chr1 174554700 174554999 -107638665 + AluJb SINE Alu 5 300 -12 293 186 29 0 chr1 174555084 174555154 -107638510 + L1ME3A LINE L1 5324 5395 -767 971 106 0 0 chr1 174555155 174555287 -107638377 + AluY SINE Alu 1 132 -179 1075 269 99 16 chr1 174555301 174555847 -107637817 + L1ME3A LINE L1 5385 5975 -195 197 339 28 9 chr1 174556133 174556242 -107637422 + MIR SINE MIR 36 146 -62 1749 158 25 0 chr1 174556283 174556567 -107637097 + AluJo SINE Alu 13 303 -9 238 273 18 0 chr1 174558881 174558936 -107634728 + MER91 DNA MER1_type 135 190 0 2210 128 7 0 chr1 174562235 174562532 -107631132 + AluSq SINE Alu 1 299 -14 284 316 40 9 chr1 174563186 174563316 -107630348 + MIR SINE MIR 19 152 -67 1899 177 0 3 chr1 174563316 174563604 -107630060 + AluJo SINE Alu 1 287 -25 2447 83 7 3 chr1 174563615 174563917 -107629747 + AluSg SINE Alu 1 303 -7 261 75 0 0 chr1 174563917 174563957 -107629707 + (TA)n Simple_repeat Simple_repeat 2 41 0 201 274 126 11 chr1 174568810 174568905 -107624759 + MIR SINE MIR 36 141 -121 1308 159 7 69 chr1 174570674 174570951 -107622713 + AluJo SINE Alu 49 308 -4 406 246 119 25 chr1 174572531 174572649 -107621015 - MIR SINE MIR -16 246 118 186 271 42 52 chr1 174573544 174573640 -107620024 + MIR SINE MIR 56 150 -112 246 312 116 58 chr1 174575121 174575637 -107618027 - L1MEd LINE L1 -5567 552 7 709 244 30 35 chr1 174576114 174576315 -107617349 + MIR SINE MIR 58 257 -5 2413 82 3 0 chr1 174576327 174576621 -107617043 + AluSx SINE Alu 1 295 -17 226 164 33 66 chr1 174576626 174576687 -107616977 - MIR SINE MIR -148 114 56 499 232 68 39 chr1 174576705 174576912 -107616752 - L2 LINE L2 -55 3258 3046 273 290 7 76 chr1 174577104 174577249 -107616415 + MIR SINE MIR 10 144 -118 403 288 20 33 chr1 174579126 174579279 -107614385 + MIR SINE MIR 100 250 -12 277 216 62 41 chr1 174579295 174579392 -107614272 + MIR SINE MIR 119 217 -45 2557 54 0 3 chr1 174579704 174580002 -107613662 + AluY SINE Alu 1 297 -14 377 288 127 81 chr1 174580025 174580516 -107613148 + MLT1L LTR MaLR 22 609 -2 2440 87 0 0 chr1 174580570 174580869 -107612795 + AluSg SINE Alu 1 299 -11 268 277 0 24 chr1 174581108 174581191 -107612473 + MLT1L-int LTR MaLR 17 97 -1274 328 311 25 57 chr1 174581215 174581437 -107612227 + MLT1L-int LTR MaLR 303 518 -853 2214 114 0 3 chr1 174581437 174581727 -107611937 + AluSc SINE Alu 1 289 -20 328 311 25 57 chr1 174581727 174581748 -107611916 + MLT1L-int LTR MaLR 518 538 -833 595 92 51 0 chr1 174581752 174581850 -107611814 + AluSg/x SINE Alu 204 306 -6 186 43 0 0 chr1 174582633 174582656 -107611008 + (A)n Simple_repeat Simple_repeat 1 23 0 2055 140 0 0 chr1 174582656 174582935 -107610729 - AluSx SINE Alu -31 281 3 342 228 68 110 chr1 174582982 174583201 -107610463 + MLT1L-int LTR MaLR 1162 1371 0 282 262 12 128 chr1 174583218 174583272 -107610392 + MLT1G3 LTR MaLR 12 71 -484 2232 92 32 0 chr1 174583272 174583556 -107610108 + AluSg SINE Alu 1 293 -17 282 262 12 128 chr1 174583556 174583673 -107609991 + MLT1G3 LTR MaLR 71 163 -392 1966 163 0 0 chr1 174583676 174583965 -107609699 + AluJb SINE Alu 3 291 -21 34 0 0 0 chr1 174583965 174583999 -107609665 + AT_rich Low_complexity Low_complexity 1 34 0 535 228 123 95 chr1 174584002 174584321 -107609343 + MLT1G3 LTR MaLR 151 482 -60 2135 112 10 10 chr1 174584327 174584622 -107609042 + AluSx SINE Alu 1 295 -17 1483 193 128 6 chr1 174584692 174585045 -107608619 - MSTD LTR MaLR 0 396 1 2274 121 0 9 chr1 174585061 174585376 -107608288 - AluSx SINE Alu 0 312 1 275 234 104 0 chr1 174586309 174586386 -107607278 - MIR SINE MIR -60 202 118 1535 136 5 0 chr1 174586431 174586645 -107607019 - AluJo SINE Alu -18 294 80 1441 157 117 12 chr1 174586656 174586905 -107606759 - AluJo SINE Alu -37 275 1 1643 149 107 25 chr1 174587172 174587453 -107606211 + AluJo SINE Alu 1 304 -8 1117 68 0 0 chr1 174587458 174587590 -107606074 + AluSq/x SINE Alu 3 134 -179 2113 90 8 0 chr1 174587593 174587860 -107605804 + AluSq SINE Alu 39 307 -6 323 300 20 0 chr1 174587882 174587982 -107605682 + MIR3 SINE MIR 81 182 -26 194 328 0 0 chr1 174588877 174588935 -107604729 + L2 LINE L2 3129 3186 -86 243 0 0 0 chr1 174589318 174589345 -107604319 + (A)n Simple_repeat Simple_repeat 1 27 0 2616 62 0 3 chr1 174589505 174589811 -107603853 + AluY SINE Alu 1 305 -6 1807 52 11 52 chr1 174591725 174591996 -107601668 + L1PA8 LINE L1 5909 6168 -4 28 0 0 0 chr1 174591996 174592024 -107601640 + AT_rich Low_complexity Low_complexity 1 28 0 229 247 0 45 chr1 174592671 174592760 -107600904 + (CAGAGA)n Simple_repeat Simple_repeat 5 89 0 217 182 0 0 chr1 174592885 174592929 -107600735 + MIR SINE MIR 67 110 -98 843 122 0 9 chr1 174593438 174593553 -107600111 + FRAM SINE Alu 35 148 -28 419 274 161 11 chr1 174594024 174594210 -107599454 - MIR SINE MIR -7 255 42 684 225 102 11 chr1 174594440 174594627 -107599037 - AluJb SINE Alu -1 311 108 2108 105 7 3 chr1 174600219 174600504 -107593160 - AluSc SINE Alu -12 297 12 329 120 0 0 chr1 174600506 174600556 -107593108 - Alu SINE Alu -252 50 1 2430 78 3 0 chr1 174601587 174601880 -107591784 + AluSp SINE Alu 1 294 -19 2276 112 10 0 chr1 174602240 174602543 -107591121 - AluSc SINE Alu -2 307 2 2413 88 3 0 chr1 174602657 174602954 -107590710 - AluSp SINE Alu -14 299 2 1049 113 0 0 chr1 174604283 174604416 -107589248 + AluJb SINE Alu 1 133 -179 2000 126 3 14 chr1 174604426 174604719 -107588945 + AluSx SINE Alu 1 290 -22 2302 95 0 3 chr1 174604727 174605009 -107588655 + AluSx SINE Alu 1 283 -29 228 35 0 0 chr1 174605009 174605038 -107588626 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 2302 95 0 3 chr1 174605038 174605050 -107588614 + AluSx SINE Alu 283 294 -18 2499 73 0 3 chr1 174605640 174605942 -107587722 + AluY SINE Alu 2 302 -9 2273 85 0 24 chr1 174607154 174607447 -107586217 - AluSg SINE Alu -19 291 6 683 167 127 0 chr1 174608390 174608540 -107585124 - FRAM SINE Alu -10 166 1 1386 177 38 51 chr1 174608590 174608906 -107584758 + AluJo SINE Alu 1 312 0 2257 88 3 7 chr1 174608984 174609281 -107584383 - AluSx SINE Alu -16 296 1 231 235 39 0 chr1 174609303 174609354 -107584310 + MER5B DNA MER1_type 1 53 -125 948 115 8 0 chr1 174609368 174609498 -107584166 + FLAM_C SINE Alu 1 131 -12 1168 78 6 36 chr1 174609732 174609899 -107583765 + AluSp SINE Alu 130 291 -22 297 75 0 0 chr1 174609899 174609939 -107583725 + (TA)n Simple_repeat Simple_repeat 2 41 0 693 181 12 38 chr1 174611376 174611536 -107582128 - AluJb SINE Alu -1 311 156 2284 95 30 3 chr1 174611565 174611869 -107581795 - AluSx SINE Alu 0 312 1 234 105 0 0 chr1 174612010 174612048 -107581616 + (TG)n Simple_repeat Simple_repeat 2 39 0 334 257 50 10 chr1 174612076 174612177 -107581487 + L2 LINE L2 3208 3312 -1 2482 72 0 0 chr1 174612186 174612490 -107581174 + AluY SINE Alu 1 304 -7 200 228 13 76 chr1 174612785 174612864 -107580800 + G-rich Low_complexity Low_complexity 5 78 0 568 292 20 48 chr1 174613256 174613506 -107580158 - MIR SINE MIR 0 262 20 2296 114 0 0 chr1 174618605 174618904 -107574760 - AluSx SINE Alu -13 299 1 353 281 7 37 chr1 174619101 174619236 -107574428 - MIR3 SINE MIR -7 201 71 236 242 42 53 chr1 174619492 174619550 -107574114 + L2 LINE L2 270 328 -2986 1637 167 28 21 chr1 174619550 174619701 -107573963 - AluJb SINE Alu -22 290 135 2341 105 0 0 chr1 174619701 174619997 -107573667 - AluSx SINE Alu -16 296 1 1637 167 28 21 chr1 174619997 174620133 -107573531 - AluJb SINE Alu -177 135 1 236 242 42 53 chr1 174620133 174620169 -107573495 + L2 LINE L2 328 363 -2951 1826 135 97 0 chr1 174620269 174620536 -107573128 + AluSx SINE Alu 3 295 -17 296 340 71 27 chr1 174620578 174620946 -107572718 + L2 LINE L2 2385 2768 -546 244 327 32 32 chr1 174620989 174621145 -107572519 + L2 LINE L2 2906 3061 -211 2552 68 3 3 chr1 174621253 174621562 -107572102 - AluSx SINE Alu -3 309 1 233 314 57 29 chr1 174621573 174621678 -107571986 + L2 LINE L2 3116 3223 -49 1519 110 15 0 chr1 174622288 174622488 -107571176 + AluSp SINE Alu 1 203 -110 337 259 0 0 chr1 174623421 174623502 -107570162 - MLT1K LTR MaLR -343 245 165 319 225 133 19 chr1 174623547 174623667 -107569997 + MIR SINE MIR 70 201 -61 2467 94 3 0 chr1 174623738 174624047 -107569617 + AluSg SINE Alu 1 310 0 7682 52 6 128 chr1 174624440 174625648 -107568016 + SVA Other Other 13 1072 -314 925 137 14 7 chr1 174625749 174625895 -107567769 + FRAM SINE Alu 19 165 -11 1252 183 18 0 chr1 174625895 174626124 -107567540 - MER70A LTR ERVL -239 233 1 238 247 71 0 chr1 174626124 174626209 -107567455 + HAL1 LINE L1 1478 1568 -939 1793 150 31 7 chr1 174626214 174626500 -107567164 + AluSx SINE Alu 1 293 -19 210 71 0 0 chr1 174626500 174626528 -107567136 + (GA)n Simple_repeat Simple_repeat 1 28 0 2349 91 0 32 chr1 174626590 174626899 -107566765 + AluSx SINE Alu 1 299 -13 2197 116 9 31 chr1 174627359 174627678 -107565986 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 174627724 174627747 -107565917 + AT_rich Low_complexity Low_complexity 1 23 0 504 335 36 79 chr1 174627786 174628070 -107565594 + L1M4c LINE L1 2228 2493 -3889 2308 110 0 7 chr1 174628070 174628370 -107565294 + AluSp SINE Alu 1 298 -15 504 335 36 79 chr1 174628370 174628608 -107565056 + L1M4c LINE L1 2493 2740 -3642 739 174 0 22 chr1 174628614 174628752 -107564912 + AluJo SINE Alu 2 136 -176 2134 137 0 0 chr1 174628911 174629211 -107564453 + AluSx SINE Alu 1 300 -12 1233 139 0 0 chr1 174629362 174629534 -107564130 + AluJo SINE Alu 137 308 -4 2081 93 37 0 chr1 174629538 174629806 -107563858 + AluY SINE Alu 20 297 -14 2261 114 0 3 chr1 174629878 174630186 -107563478 + AluSx SINE Alu 1 307 -5 502 244 58 49 chr1 174630208 174630344 -107563320 + L1ME3 LINE L1 5725 5866 -296 2218 100 4 0 chr1 174630344 174630647 -107563017 + AluSp SINE Alu 3 306 0 502 244 58 49 chr1 174630647 174630734 -107562930 + L1ME3 LINE L1 5866 5951 -211 1241 97 0 0 chr1 174630748 174630924 -107562740 + AluSg/x SINE Alu 129 304 0 779 282 161 31 chr1 174631203 174631718 -107561946 + HAL1b LINE L1 340 921 -427 1999 105 19 73 chr1 174631721 174632035 -107561629 + AluSx SINE Alu 1 297 -15 328 185 194 28 chr1 174632035 174632143 -107561521 + HAL1b LINE L1 1024 1149 -199 2247 107 14 0 chr1 174632144 174632434 -107561230 - AluSx SINE Alu -18 294 1 494 353 49 0 chr1 174632440 174632684 -107560980 - L2 LINE L2 -606 2708 2453 503 309 39 87 chr1 174632773 174632919 -107560745 + L2 LINE L2 2143 2294 -1020 1856 127 101 0 chr1 174632919 174633186 -107560478 - AluSx SINE Alu -15 297 4 503 309 39 87 chr1 174633186 174633524 -107560140 + L2 LINE L2 2294 2604 -710 212 224 243 37 chr1 174633513 174633620 -107560044 + L2 LINE L2 3092 3220 -93 * 1939 154 0 32 chr1 174633634 174633945 -107559719 + AluJb SINE Alu 1 301 -11 395 125 0 0 chr1 174633945 174634001 -107559663 + AluS SINE Alu 2 57 -251 1171 136 0 0 chr1 174834013 174834190 -107359474 + AluSg/x SINE Alu 131 307 -5 2116 123 3 10 chr1 174834254 174834554 -107359110 + AluSx SINE Alu 1 298 -14 387 117 84 4 chr1 174834582 174834862 -107358802 + (TA)n Simple_repeat Simple_repeat 1 302 0 2332 97 3 0 chr1 174834977 174835277 -107358387 - AluSp SINE Alu -12 301 1 791 173 86 6 chr1 174835683 174835845 -107357819 + FAM SINE Alu 1 175 0 247 228 18 0 chr1 174835872 174835929 -107357735 + AluYb8 SINE Alu 246 303 -5 316 250 103 10 chr1 174836050 174836159 -107357505 + MIR SINE MIR 30 148 -87 2234 95 3 0 chr1 174838066 174838362 -107355302 - AluSg SINE Alu -13 297 1 2069 112 14 3 chr1 174838837 174839123 -107354541 + AluSx SINE Alu 14 302 -10 2205 118 0 0 chr1 174839125 174839422 -107354242 + AluSg1 SINE Alu 1 297 -12 200 333 43 0 chr1 174839423 174839492 -107354172 + MIR SINE MIR 26 97 -165 2408 88 0 0 chr1 174842421 174842716 -107350948 + AluSq SINE Alu 1 295 -18 1850 159 3 25 chr1 174843738 174843918 -107349746 - AluSx SINE Alu -4 308 126 183 42 0 0 chr1 174843918 174843942 -107349722 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2179 107 0 4 chr1 174843942 174844222 -107349442 - AluSg SINE Alu -31 279 1 1850 159 3 25 chr1 174844222 174844355 -107349309 - AluSx SINE Alu -184 128 1 456 196 0 0 chr1 174844576 174844668 -107348996 - AluJ/FRAM SINE Alu 0 312 221 3319 144 18 109 chr1 174844759 174844785 -107348879 - L1MB3 LINE L1 -2 6181 6154 2354 96 3 0 chr1 174844785 174845077 -107348587 - AluSp SINE Alu -20 293 1 3319 144 18 109 chr1 174845077 174845199 -107348465 - L1MB3 LINE L1 -29 6154 6022 1974 153 3 3 chr1 174845199 174845500 -107348164 + AluJo SINE Alu 1 301 -11 3319 144 18 109 chr1 174845500 174845537 -107348127 - L1MB3 LINE L1 -161 6022 5983 1927 130 10 55 chr1 174845537 174845845 -107347819 + AluSx SINE Alu 1 294 -18 2503 59 0 13 chr1 174845845 174846152 -107347512 + AluY SINE Alu 1 303 -8 3319 144 18 109 chr1 174846152 174846423 -107347241 - L1MB3 LINE L1 -199 5984 5690 2423 103 3 0 chr1 174846423 174846735 -107346929 + AluSq SINE Alu 1 313 0 3319 144 18 109 chr1 174846735 174846831 -107346833 - L1MB3 LINE L1 -493 5690 5587 1894 164 0 0 chr1 174846831 174847171 -107346493 + AluSx SINE Alu 4 343 0 3319 144 18 109 chr1 174847171 174847392 -107346272 - L1MB3 LINE L1 -596 5587 5493 2198 129 0 0 chr1 174847392 174847695 -107345969 - AluSq SINE Alu -10 303 1 3319 144 18 109 chr1 174847695 174847739 -107345925 - L1MB3 LINE L1 -690 5493 5447 387 190 113 4 chr1 174847712 174847813 -107345851 - L1MB3 LINE L1 -2092 4054 3947 * 796 199 0 0 chr1 174847994 174848125 -107345539 - FLAM_A SINE Alu -1 132 2 1772 144 85 0 chr1 174848136 174848406 -107345258 - AluJb SINE Alu -19 293 1 1178 130 30 4 chr1 174848871 174849070 -107344594 - L1M3 LINE L1 -523 5660 5456 27 29 0 0 chr1 174849219 174849253 -107344411 + AT_rich Low_complexity Low_complexity 1 34 0 321 249 181 8 chr1 174849427 174849569 -107344095 - MIR SINE MIR -36 172 2 341 163 20 0 chr1 174849751 174849853 -107343811 - L1MC4 LINE L1 0 8042 7849 1546 165 46 14 chr1 174849882 174850167 -107343497 - AluJb SINE Alu -17 295 2 4582 163 46 40 chr1 174850170 174850884 -107342780 - L1MB7 LINE L1 -48 6136 5427 2276 119 0 0 chr1 174850884 174851186 -107342478 - AluSq SINE Alu -11 302 1 4582 163 46 40 chr1 174851186 174851389 -107342275 - L1MB7 LINE L1 -757 5427 5227 1805 163 3 23 chr1 174851389 174851695 -107341969 - AluJo SINE Alu -12 300 1 4582 163 46 40 chr1 174851695 174851982 -107341682 - L1MB7 LINE L1 -957 5227 4943 2384 112 0 0 chr1 174851982 174852294 -107341370 - AluSx SINE Alu 0 312 1 4582 163 46 40 chr1 174852294 174852844 -107340820 - L1MB7 LINE L1 -1241 4943 4371 2078 108 0 11 chr1 174852844 174853130 -107340534 - AluY SINE Alu 0 311 29 1352 122 10 0 chr1 174853130 174853327 -107340337 + MER21A LTR ERV1 664 862 -69 555 103 13 0 chr1 174853361 174853439 -107340225 + MER21A LTR ERV1 850 928 -3 436 150 30 20 chr1 174853441 174853541 -107340123 + MER21A-int LTR ERV1 1 101 -4090 711 129 0 0 chr1 174853644 174853745 -107339919 + AluS SINE Alu 2 102 -210 503 176 64 0 chr1 174853749 174853874 -107339790 - L1MB7 LINE L1 -3250 2896 2764 1075 113 0 0 chr1 174853920 174854061 -107339603 + AluJb SINE Alu 1 141 -171 201 74 0 0 chr1 174854079 174854106 -107339558 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1415 159 9 0 chr1 174854134 174854181 -107339483 + AluJb SINE Alu 84 129 -183 2171 134 0 7 chr1 174854181 174854486 -107339178 + AluSx SINE Alu 1 303 -9 1415 159 9 0 chr1 174854486 174854664 -107339000 + AluJb SINE Alu 129 311 -1 1098 162 5 5 chr1 174854709 174854907 -107338757 - MER21A-int LTR ERV1 -3993 198 1 565 90 13 0 chr1 174854909 174854987 -107338677 - MER21A LTR ERV1 -3 928 850 1795 114 20 0 chr1 174855021 174855275 -107338389 - MER21A LTR ERV1 -69 862 604 4343 116 45 37 chr1 174855276 174855958 -107337706 + LTR12 LTR ERV1 1 688 0 1161 160 75 0 chr1 174856035 174856222 -107337442 - MER21B LTR ERV1 -335 528 328 734 129 32 0 chr1 174856222 174856346 -107337318 - L1MB7 LINE L1 -3608 2538 2411 347 196 72 31 chr1 174856356 174856453 -107337211 - MER21B LTR ERV1 -149 714 614 1732 177 7 3 chr1 174856699 174856993 -107336671 - AluJo SINE Alu -17 295 1 540 259 45 121 chr1 174856998 174857311 -107336353 - MER21B LTR ERV1 -545 318 30 837 219 77 88 chr1 174857313 174857689 -107335975 - L1MDa LINE L1 -3714 2950 2571 1789 158 0 14 chr1 174857689 174857974 -107335690 - AluSg SINE Alu 0 310 30 1758 125 20 56 chr1 174857976 174858301 -107335363 - AluSx SINE Alu 0 312 1 2381 115 0 0 chr1 174858303 174858615 -107335049 - AluSx SINE Alu 0 312 1 837 219 77 88 chr1 174858615 174858696 -107334968 - L1MDa LINE L1 -4095 2569 2469 627 190 25 0 chr1 174859272 174859393 -107334271 + FLAM_A SINE Alu 1 124 -9 1602 169 92 0 chr1 174859406 174859690 -107333974 - AluJo SINE Alu -2 310 1 3971 194 42 56 chr1 174859842 174860079 -107333585 - L1M4c LINE L1 -4285 2540 2301 2208 139 0 0 chr1 174860079 174860380 -107333284 - AluSx SINE Alu -11 301 1 1514 158 49 42 chr1 174860380 174860664 -107333000 - AluJo SINE Alu -20 292 7 3971 194 42 56 chr1 174860664 174860690 -107332974 - L1M4c LINE L1 -4523 2302 2277 2251 127 0 0 chr1 174860690 174860990 -107332674 - AluSx SINE Alu -12 300 1 3971 194 42 56 chr1 174860990 174861285 -107332379 - L1M4c LINE L1 -4548 2277 1979 1876 134 36 4 chr1 174861285 174861600 -107332064 - AluSx SINE Alu 0 324 1 3971 194 42 56 chr1 174861600 174862291 -107331373 - L1M4c LINE L1 -4846 1979 1279 2430 99 0 0 chr1 174862291 174862593 -107331071 + AluSc SINE Alu 1 302 -7 3971 194 42 56 chr1 174862593 174862606 -107331058 - L1M4c LINE L1 -5546 1279 1267 1867 189 3 0 chr1 174862606 174862908 -107330756 + AluJo SINE Alu 3 305 -7 3971 194 42 56 chr1 174862908 174863244 -107330420 - L1M4c LINE L1 -5558 1267 840 227 214 0 54 chr1 174863349 174863405 -107330259 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1116 238 109 6 chr1 174863464 174863775 -107329889 + L1MC4 LINE L1 6701 7043 -999 599 142 118 47 chr1 174863744 174863871 -107329793 + L1PB4 LINE L1 6016 6151 -5 * 2260 93 3 10 chr1 174863904 174864204 -107329460 + AluSg SINE Alu 1 298 -12 228 256 0 39 chr1 174864234 174864312 -107329352 + GA-rich Low_complexity Low_complexity 2 76 0 925 268 83 17 chr1 174864314 174864616 -107329048 + L1MC4 LINE L1 7088 7409 -633 701 196 61 108 chr1 174864616 174864830 -107328834 + MER63A DNA MER1_type 7 210 0 2103 128 0 0 chr1 174864831 174865160 -107328504 - AluSx SINE Alu 0 329 1 859 196 65 11 chr1 174865164 174865348 -107328316 - AluJo SINE Alu -15 297 104 815 80 0 0 chr1 174865350 174865450 -107328214 + AluJ SINE Alu 36 135 -177 2533 160 2 2 chr1 174865450 174866028 -107327636 - L1P5 LINE L1 -689 5462 4885 2615 59 0 0 chr1 174866062 174866365 -107327299 + AluY SINE Alu 2 304 -7 4469 101 22 30 chr1 174866366 174866691 -107326973 + L1PB1 LINE L1 5462 5788 -363 234 0 0 0 chr1 174866691 174866717 -107326947 + (CA)n Simple_repeat Simple_repeat 2 27 0 4469 101 22 30 chr1 174866717 174866757 -107326907 + L1PB1 LINE L1 5788 5827 -324 2395 101 0 7 chr1 174866757 174867065 -107326599 + AluSg SINE Alu 1 306 -4 4469 101 22 30 chr1 174867065 174867394 -107326270 + L1PB1 LINE L1 5827 6151 0 1009 204 0 10 chr1 174867411 174867607 -107326057 + AluJ SINE Alu 118 311 -1 568 244 76 91 chr1 174867611 174868127 -107325537 + L1MC4 LINE L1 7535 8042 0 208 0 62 0 chr1 174868463 174868495 -107325169 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 7388 42 0 2 chr1 174868496 174869696 -107323968 - L1PA6 LINE L1 -17 6137 4942 2722 20 0 0 chr1 174869707 174870012 -107323652 - L1PA3 LINE L1 -3 6152 5848 2329 76 4 0 chr1 174870012 174870289 -107323375 - AluY SINE Alu -29 282 5 16894 49 6 10 chr1 174870290 174872059 -107321605 - L1PA6 LINE L1 -1187 4959 3198 2289 68 4 0 chr1 174872059 174872361 -107321303 - AluY SINE Alu 0 304 2 16894 49 6 10 chr1 174872361 174872736 -107320928 - L1PA6 LINE L1 -2948 3198 2823 2116 141 3 3 chr1 174872770 174873082 -107320582 - AluSx SINE Alu 0 312 1 1815 177 0 3 chr1 174873258 174873552 -107320112 - AluJo SINE Alu -16 296 4 486 0 0 0 chr1 174873552 174873606 -107320058 + (TTTTA)n Simple_repeat Simple_repeat 3 56 0 2218 107 0 3 chr1 174873607 174873898 -107319766 - AluSx SINE Alu -20 292 3 499 266 89 92 chr1 174873949 174874242 -107319422 - L2 LINE L2 0 3272 2981 296 210 16 0 chr1 174874418 174874480 -107319184 - MLT1F LTR MaLR -459 83 21 778 166 0 43 chr1 174874496 174874635 -107319029 + AluJo SINE Alu 2 134 -178 203 84 70 28 chr1 174874676 174874747 -107318917 + (TA)n Simple_repeat Simple_repeat 1 74 0 323 262 56 0 chr1 174874908 174875015 -107318649 - MIR SINE MIR -13 249 137 554 296 12 18 chr1 174875527 174875696 -107317968 + L2 LINE L2 3102 3269 -3 202 208 14 14 chr1 174875798 174875813 -107317851 + A-rich Low_complexity Low_complexity 4 18 -57 1890 157 37 0 chr1 174875813 174876083 -107317581 + AluJb SINE Alu 1 285 -27 180 0 0 0 chr1 174876083 174876103 -107317561 + (CA)n Simple_repeat Simple_repeat 1 20 0 1890 157 37 0 chr1 174876103 174876132 -107317532 + AluJb SINE Alu 285 311 -1 202 208 14 14 chr1 174876132 174876188 -107317476 + A-rich Low_complexity Low_complexity 17 75 0 374 324 97 0 chr1 174876421 174876566 -107317098 - MIR3 SINE MIR -6 202 44 2255 101 20 0 chr1 174876567 174876864 -107316800 + AluSg SINE Alu 1 303 -7 2141 120 0 0 chr1 174877285 174877597 -107316067 - AluSx SINE Alu 0 312 1 2052 118 47 0 chr1 174878444 174878723 -107314941 - AluSx SINE Alu -20 292 1 1729 148 16 60 chr1 174879172 174879343 -107314321 - AluJo SINE Alu -8 304 152 1938 148 10 10 chr1 174879343 174879640 -107314024 - AluJb SINE Alu -15 297 1 1729 148 16 60 chr1 174879640 174879786 -107313878 - AluJo SINE Alu -160 152 1 929 178 0 35 chr1 174880785 174880954 -107312710 + FAM SINE Alu 1 163 -12 423 0 0 0 chr1 174880955 174881002 -107312662 + (CA)n Simple_repeat Simple_repeat 2 48 0 1740 186 7 0 chr1 174881416 174881711 -107311953 + AluJb SINE Alu 1 297 -15 1747 138 34 50 chr1 174881973 174882271 -107311393 + AluJb SINE Alu 1 293 -19 982 167 0 30 chr1 174882379 174882547 -107311117 + FRAM SINE Alu 6 168 -8 237 250 0 0 chr1 174882575 174882619 -107311045 - L1ME4a LINE L1 -77 6044 6001 1165 146 0 0 chr1 174882619 174882797 -107310867 - AluSg/x SINE Alu -15 297 120 331 283 145 6 chr1 174882827 174882986 -107310678 - L1ME4a LINE L1 -294 5827 5647 1655 153 0 95 chr1 174882997 174883142 -107310522 + AluJo SINE Alu 1 158 -144 2295 89 3 3 chr1 174883142 174883435 -107310229 + AluSx SINE Alu 1 293 -19 1655 153 0 95 chr1 174883435 174883452 -107310212 + AluJo SINE Alu 158 175 -127 1054 64 29 17 chr1 174883452 174883625 -107310039 + (GAAA)n Simple_repeat Simple_repeat 2 176 0 1655 153 0 95 chr1 174883625 174883787 -107309877 + AluJo SINE Alu 175 295 -7 3345 102 45 4 chr1 174884781 174885272 -107308392 - MER9 LTR ERVK 0 511 1 32684 94 7 4 chr1 174885275 174887179 -107306485 - HERVK9 LTR ERVK -2 8032 6134 2292 91 0 17 chr1 174887179 174887475 -107306189 + AluY SINE Alu 1 291 -20 32684 94 7 4 chr1 174887475 174890222 -107303442 - HERVK9 LTR ERVK -1900 6134 1348 4316 99 10 19 chr1 174890223 174890840 -107302824 - HERVK9 LTR ERVK -5305 611 1 3375 102 45 4 chr1 174890840 174891331 -107302333 - MER9 LTR ERVK 0 511 1 3936 82 12 42 chr1 174891331 174891619 -107302045 - L1MA3 LINE L1 -44 6261 5999 2171 103 24 0 chr1 174891619 174891910 -107301754 - AluSq SINE Alu -15 298 1 3936 82 12 42 chr1 174891910 174892209 -107301455 - L1MA3 LINE L1 -306 5999 5692 23 0 0 0 chr1 174892665 174892688 -107300976 + AT_rich Low_complexity Low_complexity 1 23 0 1820 159 0 10 chr1 174892694 174892989 -107300675 - AluJb SINE Alu -16 296 5 27 29 0 0 chr1 174893291 174893325 -107300339 + AT_rich Low_complexity Low_complexity 1 34 0 2487 86 0 3 chr1 174894255 174894568 -107299096 - AluSq SINE Alu 0 313 2 2013 111 26 0 chr1 174894793 174895064 -107298600 + AluSx SINE Alu 21 298 -14 2275 71 3 48 chr1 174895064 174895373 -107298291 + AluSp SINE Alu 1 295 -18 2176 121 0 0 chr1 174895373 174895671 -107297993 + AluJb SINE Alu 1 298 -14 1979 134 32 0 chr1 174895681 174895965 -107297699 + AluJb SINE Alu 1 293 -19 2264 67 0 7 chr1 174895965 174896277 -107297387 + AluY SINE Alu 1 310 0 1995 144 0 10 chr1 174896290 174896588 -107297076 + AluJb SINE Alu 1 295 -17 219 69 0 0 chr1 174897017 174897046 -107296618 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1614 149 17 0 chr1 174897103 174897338 -107296326 + AluSx SINE Alu 42 280 -32 243 103 0 0 chr1 174897343 174897382 -107296282 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1810 189 0 0 chr1 174897428 174897734 -107295930 + AluJb SINE Alu 1 306 -6 2454 68 0 16 chr1 174897802 174898112 -107295552 + AluY SINE Alu 1 305 -6 226 148 37 0 chr1 174898229 174898283 -107295381 + CT-rich Low_complexity Low_complexity 5 60 0 738 212 8 0 chr1 174898302 174898434 -107295230 - FLAM_A SINE Alu 0 133 1 969 186 0 24 chr1 174898498 174898665 -107294999 + FRAM SINE Alu 1 155 -21 716 139 0 0 chr1 174898670 174898771 -107294893 + U6 snRNA snRNA 1 101 -6 6856 81 28 30 chr1 174898773 174899157 -107294507 + L1M1 LINE L1 2533 2916 -4649 2363 93 0 7 chr1 174899157 174899457 -107294207 + AluSx SINE Alu 1 298 -14 6856 81 28 30 chr1 174899457 174899932 -107293732 + L1M1 LINE L1 2916 3392 -4173 1714 159 3 57 chr1 174899932 174900049 -107293615 + AluJb SINE Alu 1 123 -189 2354 115 0 6 chr1 174900049 174900361 -107293303 + AluSq SINE Alu 2 311 -2 1714 159 3 57 chr1 174900361 174900557 -107293107 + AluJb SINE Alu 123 297 -15 6856 81 28 30 chr1 174900557 174900774 -107292890 + L1M1 LINE L1 3392 3608 -3957 646 107 5 6 chr1 174900774 174901036 -107292628 + AluSx SINE Alu 1 313 0 4390 211 39 102 chr1 174901036 174901629 -107292035 + L1MA3 LINE L1 3599 4228 -3337 1773 171 0 26 chr1 174901629 174901939 -107291725 + AluJb SINE Alu 1 302 -10 464 130 0 26 chr1 174901939 174902016 -107291648 + AluJo/FRAM SINE Alu 213 287 -25 4390 211 39 102 chr1 174902016 174902028 -107291636 + L1MA3 LINE L1 4227 4238 -3327 2372 97 17 0 chr1 174902028 174902326 -107291338 + AluSq SINE Alu 1 303 -10 423 0 0 0 chr1 174902331 174902378 -107291286 + (CA)n Simple_repeat Simple_repeat 2 48 0 4390 211 39 102 chr1 174902378 174902660 -107291004 + L1MA3 LINE L1 4242 4540 -3025 2297 104 0 13 chr1 174902660 174902968 -107290696 + AluSg SINE Alu 1 304 -6 4390 211 39 102 chr1 174902968 174903013 -107290651 + L1MA3 LINE L1 4540 4586 -2979 2199 90 0 17 chr1 174903013 174903312 -107290352 + AluSq SINE Alu 20 313 0 4390 211 39 102 chr1 174903312 174903553 -107290111 + L1MA3 LINE L1 4586 4841 -2724 2445 95 0 0 chr1 174903553 174903849 -107289815 + AluSg SINE Alu 1 296 -14 4390 211 39 102 chr1 174903849 174904066 -107289598 + L1MA3 LINE L1 4841 4901 -2664 2250 106 3 0 chr1 174904066 174904359 -107289305 + AluSx SINE Alu 3 296 -16 4390 211 39 102 chr1 174904359 174904648 -107289016 + L1MA3 LINE L1 4901 5207 -2358 716 156 0 0 chr1 174904653 174904775 -107288889 + AluSg/x SINE Alu 183 304 -6 4782 168 3 3 chr1 174904775 174905640 -107288024 + L1MA3 LINE L1 5904 6768 -797 2130 114 0 60 chr1 174905667 174906057 -107287607 - AluSx SINE Alu 0 370 1 842 107 0 61 chr1 174906064 174906195 -107287469 + AluSg/x SINE Alu 173 295 -17 6226 86 10 58 chr1 174906197 174906663 -107287001 + L1MA3 LINE L1 6780 7267 -457 1760 166 0 36 chr1 174906663 174906971 -107286693 + AluJo SINE Alu 1 297 -15 6226 86 10 58 chr1 174906971 174907303 -107286361 + L1MA3 LINE L1 7267 7613 -111 2172 127 0 3 chr1 174907303 174907594 -107286070 + AluSx SINE Alu 1 290 -22 6226 86 10 58 chr1 174907594 174907645 -107286019 + L1MA3 LINE L1 7613 7665 -59 1716 162 6 57 chr1 174907645 174907960 -107285704 + AluJo SINE Alu 1 299 -13 6226 86 10 58 chr1 174907960 174908100 -107285564 + L1MA3 LINE L1 7665 7724 0 1625 145 0 0 chr1 174908117 174908358 -107285306 + AluJb SINE Alu 23 263 -49 1009 113 6 19 chr1 174908366 174908526 -107285138 - L1PB1 LINE L1 -3 6148 5991 40 0 0 0 chr1 174908530 174908570 -107285094 + AT_rich Low_complexity Low_complexity 1 40 0 2031 86 52 0 chr1 174908969 174909271 -107284393 - AluSp SINE Alu 0 316 1 2518 72 7 0 chr1 174909291 174909596 -107284068 - AluY SINE Alu -4 307 1 2135 96 46 3 chr1 174909598 174909880 -107283784 - AluSx SINE Alu -18 294 1 2139 143 0 7 chr1 174910080 174910388 -107283276 - AluSx SINE Alu -6 306 1 211 200 0 0 chr1 174910581 174910621 -107283043 + T-rich Low_complexity Low_complexity 2 41 0 2782 152 15 38 chr1 174911306 174911582 -107282082 - L1MB5 LINE L1 -10 6164 5883 2422 93 7 0 chr1 174911582 174911892 -107281772 - AluSx SINE Alu 0 312 1 2782 152 15 38 chr1 174911892 174912045 -107281619 - L1MB5 LINE L1 -291 5883 5747 2191 114 3 0 chr1 174912045 174912342 -107281322 + AluSp SINE Alu 1 298 -15 2782 152 15 38 chr1 174912342 174912438 -107281226 - L1MB5 LINE L1 -427 5747 5650 2158 89 0 43 chr1 174912449 174912752 -107280912 - AluSq SINE Alu -23 290 1 234 150 0 0 chr1 174913318 174913358 -107280306 + (GAA)n Simple_repeat Simple_repeat 3 42 0 2558 49 7 3 chr1 174913465 174913770 -107279894 + AluY SINE Alu 1 306 -5 1494 193 3 31 chr1 174913861 174914151 -107279513 + AluJo SINE Alu 1 282 -30 406 278 150 39 chr1 174914243 174914423 -107279241 - MIR SINE MIR -17 245 46 2210 87 10 17 chr1 174914607 174914906 -107278758 + AluSg1 SINE Alu 1 297 -12 2223 130 0 0 chr1 174914915 174915215 -107278449 + AluSx SINE Alu 1 300 -12 2159 113 13 0 chr1 174915717 174916017 -107277647 + AluJb SINE Alu 1 304 -8 391 291 0 0 chr1 174916663 174916742 -107276922 + AluJ/FLAM SINE Alu 6 84 -218 1219 138 10 35 chr1 174917178 174917381 -107276283 - AluSg/x SINE Alu -9 303 106 2429 86 0 0 chr1 174917453 174917756 -107275908 + AluSc SINE Alu 1 303 -6 1299 169 25 99 chr1 174917768 174917868 -107275796 + AluJb SINE Alu 38 144 -168 2231 112 0 0 chr1 174917868 174918153 -107275511 + AluSg SINE Alu 1 285 -25 1299 169 25 99 chr1 174918153 174918336 -107275328 + AluJb SINE Alu 144 300 -12 2130 114 4 0 chr1 174918739 174919048 -107274616 - AluSq SINE Alu 0 310 1 1903 222 156 92 chr1 174919919 174920421 -107273243 - L2 LINE L2 -571 2743 2275 2228 123 0 0 chr1 174920421 174920730 -107272934 + AluSx SINE Alu 1 309 -3 1903 222 156 92 chr1 174920730 174920877 -107272787 - L2 LINE L2 -1039 2275 2139 2319 101 7 3 chr1 174920877 174921185 -107272479 + AluSg SINE Alu 1 309 -1 1903 222 156 92 chr1 174921185 174921395 -107272269 - L2 LINE L2 -1175 2139 1944 2102 130 0 10 chr1 174921395 174921695 -107271969 - AluSx SINE Alu -13 299 3 1903 222 156 92 chr1 174921695 174921710 -107271954 - L2 LINE L2 -1370 1944 1931 1914 153 10 0 chr1 174921710 174921879 -107271785 - AluSx SINE Alu -13 299 124 234 0 0 0 chr1 174921879 174921905 -107271759 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1914 153 10 0 chr1 174921905 174922029 -107271635 - AluSx SINE Alu -188 124 3 1903 222 156 92 chr1 174922029 174922253 -107271411 - L2 LINE L2 -1383 1931 1571 1811 174 10 7 chr1 174922422 174922720 -107270944 - AluJo SINE Alu -13 299 1 1739 148 10 46 chr1 174922725 174922736 -107270928 - AluJb SINE Alu -18 294 284 451 0 0 0 chr1 174922736 174922786 -107270878 + (TTTA)n Simple_repeat Simple_repeat 3 160 0 1739 148 10 46 chr1 174922786 174922942 -107270722 - AluJb SINE Alu -28 284 124 252 0 0 0 chr1 174922942 174922970 -107270694 + (TG)n Simple_repeat Simple_repeat 2 29 0 2118 130 3 0 chr1 174922970 174923254 -107270410 - AluSx SINE Alu -27 285 1 1739 148 10 46 chr1 174923254 174923389 -107270275 - AluJb SINE Alu -186 126 1 1315 79 0 0 chr1 174923471 174923649 -107270015 + L1PA11 LINE L1 5996 6173 -1 2115 159 0 0 chr1 174923662 174923971 -107269693 - AluSx SINE Alu -3 309 1 315 302 57 0 chr1 174924418 174924524 -107269140 - L2 LINE L2 0 3313 3202 2094 134 0 0 chr1 174924628 174924939 -107268725 + AluSx SINE Alu 1 311 0 2377 115 0 0 chr1 174925089 174925401 -107268263 - AluSx SINE Alu 0 312 1 678 190 0 0 chr1 174925496 174925612 -107268052 + FLAM_C SINE Alu 2 117 -26 2262 92 7 7 chr1 174925664 174925969 -107267695 - AluSp SINE Alu -8 305 1 1068 173 0 0 chr1 174925983 174926145 -107267519 + FRAM SINE Alu 1 159 -17 2273 85 6 70 chr1 174926683 174927013 -107266651 + AluSx SINE Alu 1 309 -3 889 139 0 0 chr1 174927035 174927164 -107266500 + FLAM_C SINE Alu 6 134 -9 2480 87 0 0 chr1 174927171 174927469 -107266195 + AluSg SINE Alu 1 298 -12 2440 66 3 0 chr1 174927785 174928104 -107265560 - AluSp SINE Alu 0 313 1 966 139 6 42 chr1 174928155 174928320 -107265344 + AluSg/x SINE Alu 137 295 -17 1842 160 0 22 chr1 174928876 174929189 -107264475 - AluJo SINE Alu -6 306 1 2112 122 3 7 chr1 174929482 174929778 -107263886 + AluSx SINE Alu 1 295 -17 2104 112 4 0 chr1 174929950 174930264 -107263400 - AluSg SINE Alu 0 317 3 723 149 35 0 chr1 174930269 174930422 -107263242 - FLAM_C SINE Alu 0 157 1 2290 117 0 0 chr1 174930803 174931101 -107262563 + AluSx SINE Alu 1 298 -14 2509 72 0 7 chr1 174931101 174931407 -107262257 + AluY SINE Alu 1 304 -7 2265 103 3 0 chr1 174931413 174931703 -107261961 + AluSp SINE Alu 1 291 -22 2144 115 10 0 chr1 174931713 174932008 -107261656 + AluSq SINE Alu 1 298 -15 281 250 23 0 chr1 174932009 174932097 -107261567 - L1MC4 LINE L1 -1339 6703 6614 381 75 0 0 chr1 174932104 174932157 -107261507 + (TA)n Simple_repeat Simple_repeat 1 53 0 2434 89 0 6 chr1 174932180 174932493 -107261171 + AluSx SINE Alu 1 311 -1 588 204 0 0 chr1 174932690 174932803 -107260861 + AluJb SINE Alu 195 307 -5 2216 104 0 37 chr1 174932817 174932953 -107260711 + AluSp SINE Alu 1 140 -171 2431 93 6 0 chr1 174932953 174933264 -107260400 + AluSp SINE Alu 1 313 0 2216 104 0 37 chr1 174933264 174933449 -107260215 + AluSp SINE Alu 140 311 0 2059 84 7 31 chr1 174933449 174933762 -107259902 + AluSx SINE Alu 3 308 0 214 50 50 25 chr1 174933810 174933824 -107259840 + (GAAAA)n Simple_repeat Simple_repeat 2 14 -28 2445 101 3 0 chr1 174933824 174934132 -107259532 + AluSg SINE Alu 1 309 -1 214 50 50 25 chr1 174934132 174934157 -107259507 + (GAAAA)n Simple_repeat Simple_repeat 14 42 0 902 196 0 0 chr1 174934165 174934328 -107259336 + FRAM SINE Alu 2 164 -2 2020 95 46 0 chr1 174934343 174934606 -107259058 + AluSx SINE Alu 25 299 -13 2563 67 0 3 chr1 174934606 174934906 -107258758 + AluY SINE Alu 1 299 -12 273 368 71 0 chr1 174935030 174935185 -107258479 - L2 LINE L2 -693 2621 2456 1761 161 61 0 chr1 174935187 174935467 -107258197 + AluJo SINE Alu 1 297 -15 2385 74 3 0 chr1 174935471 174935754 -107257910 + AluY SINE Alu 3 286 -25 22 0 0 0 chr1 174935754 174935776 -107257888 + AT_rich Low_complexity Low_complexity 1 22 0 1150 156 6 17 chr1 174935785 174935965 -107257699 + AluJo SINE Alu 121 298 -14 1884 141 3 42 chr1 174936214 174936340 -107257324 + AluJb SINE Alu 5 134 -178 1696 122 38 4 chr1 174936340 174936578 -107257086 - AluSg SINE Alu -19 291 46 1884 141 3 42 chr1 174936578 174936757 -107256907 + AluJb SINE Alu 134 298 -14 2335 97 0 3 chr1 174937479 174937779 -107255885 + AluSc SINE Alu 1 299 -10 2214 168 61 19 chr1 174938177 174938675 -107254989 + Tigger7 DNA MER2_type 1 2482 -5 22 35 0 0 chr1 174938803 174938832 -107254832 + AT_rich Low_complexity Low_complexity 1 29 0 2010 135 3 22 chr1 174938843 174939154 -107254510 + AluJo SINE Alu 1 305 -7 2479 76 10 0 chr1 174939217 174939519 -107254145 - AluSx SINE Alu -7 305 1 302 276 122 16 chr1 174939837 174939960 -107253704 - MIR SINE MIR -8 254 119 1810 176 20 3 chr1 174939965 174940266 -107253398 + AluJo SINE Alu 6 311 -1 624 217 4 85 chr1 174940339 174940392 -107253272 + Charlie4 DNA MER1_type 20 76 -1885 2350 116 3 0 chr1 174940392 174940702 -107252962 - AluSx SINE Alu -1 311 1 624 217 4 85 chr1 174940702 174940883 -107252781 + Charlie4 DNA MER1_type 76 235 -1726 2164 85 9 63 chr1 174940967 174941285 -107252379 + AluSg SINE Alu 1 301 -9 1206 167 40 9 chr1 174941295 174941517 -107252147 + AluJb SINE Alu 84 312 0 908 143 167 160 chr1 174941534 174941717 -107251947 + AluJb SINE Alu 1 188 -114 2254 106 0 0 chr1 174941717 174942009 -107251655 + AluSq SINE Alu 7 298 -15 908 143 167 160 chr1 174942009 174942125 -107251539 + AluJb SINE Alu 188 302 0 2098 125 20 0 chr1 174942254 174942549 -107251115 + AluSq SINE Alu 1 301 -12 2392 99 0 0 chr1 174942660 174942964 -107250700 - AluY SINE Alu -7 304 1 511 83 0 94 chr1 174943637 174943733 -107249931 + AluSg/x SINE Alu 215 301 -11 2271 107 0 0 chr1 174943946 174944245 -107249419 - AluSx SINE Alu -13 299 1 2473 36 0 0 chr1 174944309 174944616 -107249048 + AluY SINE Alu 3 309 0 2106 107 6 38 chr1 174944625 174944944 -107248720 + AluSq SINE Alu 2 310 -3 2148 115 6 6 chr1 174944944 174945257 -107248407 + AluSp SINE Alu 1 313 0 2472 54 7 3 chr1 174945265 174945561 -107248103 + AluY SINE Alu 1 297 -14 2247 71 3 55 chr1 174945564 174945890 -107247774 + AluSc SINE Alu 1 309 0 1493 170 10 73 chr1 174945890 174946190 -107247474 - AluJo SINE Alu -23 289 9 2610 47 0 31 chr1 174946312 174946630 -107247034 - AluY SINE Alu -2 309 2 416 323 104 10 chr1 174949572 174949649 -107244015 + MIR SINE MIR 40 108 -154 2447 106 0 0 chr1 174949649 174949960 -107243704 - AluSq SINE Alu -1 312 2 416 323 104 10 chr1 174949960 174950074 -107243590 + MIR SINE MIR 108 249 -13 2330 92 7 0 chr1 174950718 174951011 -107242653 - AluSp SINE Alu -18 295 1 426 39 0 0 chr1 174951501 174951553 -107242111 + (TG)n Simple_repeat Simple_repeat 2 53 0 225 204 21 21 chr1 174951919 174952012 -107241652 + GA-rich Low_complexity Low_complexity 3 95 0 244 167 21 0 chr1 174952635 174952683 -107240981 - L2 LINE L2 -1 3312 3264 853 134 142 0 chr1 174952696 174952853 -107240811 - AluSg/x SINE Alu 0 308 133 2236 118 0 0 chr1 174952904 174953200 -107240464 - AluSx SINE Alu -16 296 1 1800 113 30 8 chr1 174953225 174953491 -107240173 + AluSc SINE Alu 32 303 -6 2470 83 0 0 chr1 174954004 174954304 -107239360 + AluSg SINE Alu 1 300 -10 1862 133 30 47 chr1 174954315 174954615 -107239049 + AluJb SINE Alu 1 295 -17 1091 153 0 6 chr1 174956549 174956726 -107236938 - AluJb SINE Alu 0 312 137 2033 58 101 4 chr1 174957591 174957867 -107235797 - AluY SINE Alu -8 303 1 233 235 235 0 chr1 174957876 174957957 -107235707 - MIR SINE MIR -152 110 11 278 318 47 39 chr1 174958204 174958333 -107235331 - MIR3 SINE MIR -18 190 61 2248 118 7 3 chr1 174958344 174958650 -107235014 + AluSx SINE Alu 1 307 -5 752 70 76 89 chr1 174958679 174958779 -107234885 + L1MA8 LINE L1 6116 6215 -76 2514 75 0 0 chr1 174958779 174959084 -107234580 - AluSg SINE Alu -5 305 1 752 70 76 89 chr1 174959084 174959141 -107234523 + L1MA8 LINE L1 6215 6271 -20 233 200 36 36 chr1 174959190 174959245 -107234419 - MIR SINE MIR -123 85 31 2405 69 10 0 chr1 174959279 174959570 -107234094 - AluSq SINE Alu -19 294 1 22 35 0 0 chr1 174959659 174959688 -107233976 + AT_rich Low_complexity Low_complexity 1 29 0 1046 172 4 107 chr1 174962712 174962918 -107230746 + MER20 DNA MER1_type 1 181 -38 2119 131 0 0 chr1 174962918 174963237 -107230427 - AluSx SINE Alu 0 319 1 1046 172 4 107 chr1 174963237 174963273 -107230391 + MER20 DNA MER1_type 181 219 0 188 178 0 22 chr1 174965327 174965372 -107228292 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr1 174965947 174965970 -107227694 + GC_rich Low_complexity Low_complexity 1 23 0 624 167 0 48 chr1 174968517 174968643 -107225021 - AluJb SINE Alu 0 312 193 2408 73 0 0 chr1 174968643 174968945 -107224719 - AluY SINE Alu -9 302 1 240 351 37 22 chr1 174969450 174969584 -107224080 - L3 LINE CR1 -56 1521 1386 2200 88 0 3 chr1 174971005 174971329 -107222335 - AluSg SINE Alu 0 323 1 204 40 0 0 chr1 174972757 174972782 -107220882 + (TCC)n Simple_repeat Simple_repeat 1 25 0 472 330 141 5 chr1 174973146 174973352 -107220312 + MIR SINE MIR 23 256 -6 480 270 35 0 chr1 174973496 174973611 -107220053 - MIR3 SINE MIR -52 156 38 204 125 0 0 chr1 174973872 174973904 -107219760 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1544 174 72 7 chr1 174974018 174974294 -107219370 + AluJb SINE Alu 1 294 -18 2231 94 0 7 chr1 174974368 174974665 -107218999 - AluSx SINE Alu -17 295 1 34 24 0 0 chr1 174976506 174976547 -107217117 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr1 174977562 174977591 -107216073 + GC_rich Low_complexity Low_complexity 1 29 0 384 77 0 0 chr1 174978800 174978852 -107214812 + (TG)n Simple_repeat Simple_repeat 2 53 0 552 281 50 0 chr1 174980519 174980679 -107212985 + MIR SINE MIR 53 220 -42 2233 118 0 0 chr1 174980704 174981010 -107212654 - AluSx SINE Alu -6 306 1 447 335 95 0 chr1 174982649 174982828 -107210836 + MER91A DNA MER1_type 1 196 0 207 315 21 56 chr1 174984921 174985064 -107208600 - L2 LINE L2 0 3313 3176 264 143 0 0 chr1 174985578 174985620 -107208044 - 5S rRNA rRNA -79 42 1 47 0 0 0 chr1 174985629 174985676 -107207988 + AT_rich Low_complexity Low_complexity 1 47 0 2429 81 0 0 chr1 174985677 174985985 -107207679 - AluY SINE Alu -3 308 1 2259 92 7 0 chr1 174985985 174986279 -107207385 - AluSx SINE Alu -15 297 1 274 326 31 31 chr1 174986285 174986383 -107207281 - MER91B DNA MER1_type -92 98 1 374 231 256 0 chr1 174986972 174987089 -107206575 + MIR SINE MIR 116 262 0 1617 137 43 8 chr1 174987321 174987577 -107206087 + AluJb SINE Alu 11 275 -37 210 71 0 0 chr1 174987580 174987608 -107206056 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 718 256 17 67 chr1 174988582 174988759 -107204905 - MIR SINE MIR -35 227 63 2332 100 0 0 chr1 174988759 174989060 -107204604 + AluSx SINE Alu 1 301 -11 718 256 17 67 chr1 174989060 174989120 -107204544 - MIR SINE MIR -199 63 2 236 330 22 11 chr1 174989120 174989186 -107204478 - MIR3 SINE MIR -59 149 83 420 55 0 0 chr1 174989554 174989609 -107204055 + (CAG)n Simple_repeat Simple_repeat 3 57 0 1279 104 6 0 chr1 174989788 174989971 -107203693 + AluSc SINE Alu 123 306 -3 2341 80 0 10 chr1 174992223 174992525 -107201139 + AluSp SINE Alu 1 299 -14 2468 62 3 0 chr1 174992534 174992839 -107200825 + AluY SINE Alu 1 306 -5 336 192 77 0 chr1 174992885 174992963 -107200701 + MIR SINE MIR 100 183 -79 487 220 93 0 chr1 174993012 174993130 -107200534 - L2 LINE L2 -1 3312 3184 23 0 0 0 chr1 174994514 174994537 -107199127 + AT_rich Low_complexity Low_complexity 1 23 0 2029 129 27 0 chr1 174996114 174996408 -107197256 + AluSx SINE Alu 1 302 -10 2098 94 28 0 chr1 174996567 174996687 -107196977 + AluSg SINE Alu 1 116 -194 459 0 0 0 chr1 174996687 174996738 -107196926 + (CA)n Simple_repeat Simple_repeat 2 52 0 2098 94 28 0 chr1 174996738 174996905 -107196759 + AluSg SINE Alu 116 296 -14 2055 115 0 29 chr1 174996915 174997053 -107196611 + AluSq SINE Alu 1 141 -172 2036 109 19 35 chr1 174997053 174997364 -107196300 + AluSg SINE Alu 1 306 -4 2055 115 0 29 chr1 174997364 174997539 -107196125 + AluSq SINE Alu 141 305 -8 509 191 0 140 chr1 174997542 174997699 -107195965 + AluJb SINE Alu 1 135 -177 321 226 24 24 chr1 174997715 174997799 -107195865 + MIR SINE MIR 67 150 -112 416 244 43 9 chr1 174998124 174998239 -107195425 + L2 LINE L2 3194 3312 -1 852 261 23 38 chr1 174998386 174998650 -107195014 - MIR SINE MIR 0 262 3 2128 89 48 3 chr1 174998690 174998983 -107194681 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 174999107 174999129 -107194535 + GC_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr1 175000066 175000092 -107193572 + (TG)n Simple_repeat Simple_repeat 2 27 0 671 161 0 88 chr1 175002410 175002463 -107191201 + FLAM_A SINE Alu 8 64 -247 2247 92 0 0 chr1 175002463 175002766 -107190898 - AluY SINE Alu -8 303 1 671 161 0 88 chr1 175002766 175002849 -107190815 + FLAM_A SINE Alu 64 132 -179 1959 133 7 7 chr1 175002863 175003164 -107190500 + AluSx SINE Alu 5 305 -7 1852 69 50 19 chr1 175003296 175003556 -107190108 + AluSx SINE Alu 6 273 -39 563 254 116 20 chr1 175003576 175003866 -107189798 + MIR SINE MIR 31 261 -1 2130 100 14 3 chr1 175005007 175005296 -107188368 + AluSx SINE Alu 1 292 -20 1459 171 62 17 chr1 175005439 175005716 -107187948 + AluJo SINE Alu 1 293 -19 1751 129 66 0 chr1 175005716 175005988 -107187676 - AluSq SINE Alu -23 290 1 1459 171 62 17 chr1 175005988 175006002 -107187662 + AluJo SINE Alu 293 305 -7 2423 71 0 0 chr1 175006037 175006334 -107187330 - AluY SINE Alu -14 297 1 2136 89 34 14 chr1 175006966 175007257 -107186407 + AluSg SINE Alu 1 297 -13 2117 87 35 0 chr1 175009253 175009540 -107184124 + AluSx SINE Alu 1 297 -15 1119 96 0 6 chr1 175009696 175009863 -107183801 - AluSp SINE Alu 0 313 148 1952 118 7 7 chr1 175009910 175010214 -107183450 - AluSp SINE Alu 0 313 10 391 156 55 83 chr1 175210214 175210247 -106983417 + L1M3 LINE L1 4211 4243 -1903 2110 95 3 3 chr1 175210247 175210542 -106983122 + AluSc SINE Alu 1 295 -14 391 156 55 83 chr1 175210542 175210554 -106983110 + L1M3 LINE L1 4243 4254 -1892 243 0 0 0 chr1 175210554 175210581 -106983083 + (CA)n Simple_repeat Simple_repeat 2 28 0 391 156 55 83 chr1 175210581 175210643 -106983021 + L1M3 LINE L1 4254 4316 -1830 32 0 0 0 chr1 175210657 175210689 -106982975 + AT_rich Low_complexity Low_complexity 1 32 0 1379 197 19 10 chr1 175210689 175210999 -106982665 + L1M3 LINE L1 4296 4608 -1538 800 201 61 6 chr1 175210999 175211163 -106982501 + AluJo SINE Alu 127 299 -13 536 182 91 65 chr1 175211175 175211293 -106982371 + L1M3 LINE L1 4616 4740 -1406 1546 6 0 0 chr1 175211293 175211465 -106982199 + AluYa5 SINE Alu 129 300 -11 536 182 91 65 chr1 175211465 175211500 -106982164 + L1M3 LINE L1 4740 4773 -1373 2037 129 7 0 chr1 175211502 175211804 -106981860 + AluSx SINE Alu 1 304 -8 645 148 17 9 chr1 175211804 175211919 -106981745 + L1M3 LINE L1 5201 5316 -830 753 108 0 2 chr1 175211920 175212180 -106981484 + AluSx SINE Alu 1 308 -1 1384 160 0 0 chr1 175212197 175212410 -106981254 + AluSg/x SINE Alu 78 290 -20 1582 132 41 37 chr1 175212419 175212714 -106980950 + L1M3 LINE L1 5325 5620 -560 677 206 24 0 chr1 175212714 175212840 -106980824 + FLAM_A SINE Alu 1 129 -4 2001 117 40 0 chr1 175212840 175213140 -106980524 + AluSp SINE Alu 1 312 -1 21 0 0 0 chr1 175213140 175213161 -106980503 + AT_rich Low_complexity Low_complexity 1 21 0 2142 63 10 13 chr1 175213328 175213629 -106980035 + AluY SINE Alu 1 300 -11 234 275 62 12 chr1 175213652 175213732 -106979932 - HAL1 LINE L1 -240 2267 2184 2210 90 0 3 chr1 175213740 175214094 -106979570 - AluSx SINE Alu 0 312 1 2832 122 14 75 chr1 175214097 175214406 -106979258 - L1MA8 LINE L1 -187 6104 5838 754 183 0 0 chr1 175214406 175214532 -106979132 - FLAM_A SINE Alu -7 126 1 2832 122 14 75 chr1 175214532 175214739 -106978925 - L1MA8 LINE L1 -453 5838 5620 225 206 79 0 chr1 175214738 175214801 -106978863 - HAL1 LINE L1 -965 1542 1475 * 327 27 0 0 chr1 175214820 175214857 -106978807 - MER4E LTR ERV1 -77 689 653 491 238 53 88 chr1 175214869 175215009 -106978655 - HAL1 LINE L1 -1046 1461 1330 1750 129 47 4 chr1 175215009 175215131 -106978533 + AluJo SINE Alu 1 116 -196 281 47 23 0 chr1 175215131 175215174 -106978490 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1750 129 47 4 chr1 175215174 175215329 -106978335 + AluJo SINE Alu 116 290 -22 491 238 53 88 chr1 175215329 175215415 -106978249 - HAL1 LINE L1 -1177 1330 1243 2274 100 0 0 chr1 175215416 175215727 -106977937 - AluY SINE Alu 0 311 1 771 128 0 0 chr1 175215813 175215922 -106977742 - FRAM SINE Alu -13 163 55 1544 152 0 32 chr1 175216034 175216148 -106977516 + AluSx SINE Alu 24 140 -172 2015 110 34 0 chr1 175216148 175216439 -106977225 + AluSx SINE Alu 1 301 -11 1544 152 0 32 chr1 175216439 175216601 -106977063 + AluSx SINE Alu 140 291 -21 480 188 148 20 chr1 175216610 175216759 -106976905 - HAL1 LINE L1 -1544 963 796 308 247 27 27 chr1 175216824 175216897 -106976767 + L1 LINE L1 4741 4813 -1333 1232 107 6 0 chr1 175216983 175217151 -106976513 - AluSq SINE Alu -144 169 1 2106 92 4 0 chr1 175217151 175217469 -106976195 - AluSg SINE Alu 0 319 1 1603 151 13 34 chr1 175217471 175217769 -106975895 - AluJo SINE Alu -20 292 1 21 36 0 0 chr1 175217772 175217800 -106975864 + AT_rich Low_complexity Low_complexity 1 28 0 366 306 54 0 chr1 175217977 175218088 -106975576 - HAL1 LINE L1 -2374 133 17 2131 104 0 3 chr1 175218093 175218390 -106975274 - AluSq SINE Alu -17 296 1 1507 108 148 32 chr1 175218397 175218674 -106974990 - AluSg1 SINE Alu 0 309 1 1494 157 66 4 chr1 175218674 175218948 -106974716 - AluJb SINE Alu -21 291 1 1110 176 197 0 chr1 175218983 175219141 -106974523 - AluJo SINE Alu -20 292 166 2018 146 0 0 chr1 175219141 175219443 -106974221 - AluSx SINE Alu -10 302 1 1110 176 197 0 chr1 175219443 175219528 -106974136 - AluJo SINE Alu -146 166 1 332 129 14 0 chr1 175219545 175219608 -106974056 + Alu SINE Alu 2 53 -249 186 43 0 0 chr1 175219817 175219840 -106973824 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 1997 133 7 7 chr1 175219840 175220149 -106973515 - AluSx SINE Alu -1 311 3 348 278 0 0 chr1 175220154 175220262 -106973402 - L1M4c LINE L1 -2838 4119 4012 534 187 0 0 chr1 175220319 175220410 -106973254 - U6 snRNA snRNA 0 107 17 311 186 71 0 chr1 175220453 175220523 -106973141 - L1M4 LINE L1 -4886 1656 1582 813 120 0 0 chr1 175220523 175220640 -106973024 - AluSc SINE Alu -11 298 182 629 223 5 59 chr1 175220645 175220767 -106972897 - L1M4c LINE L1 -2976 3981 3875 2039 126 3 22 chr1 175220767 175221084 -106972580 - AluSx SINE Alu -1 311 1 629 223 5 59 chr1 175221084 175221181 -106972483 - L1M4c LINE L1 -3082 3875 3774 1320 117 0 85 chr1 175221183 175221367 -106972297 - AluSg/x SINE Alu -2 310 112 2257 81 0 7 chr1 175221367 175221685 -106971979 - AluY SINE Alu 0 311 1 2070 103 0 7 chr1 175221691 175221983 -106971681 - AluSx SINE Alu -22 290 1 1320 117 0 85 chr1 175221983 175222038 -106971626 - AluSg/x SINE Alu -205 107 85 754 200 0 21 chr1 175222043 175222183 -106971481 - AluJo SINE Alu -174 138 2 427 206 62 41 chr1 175222188 175222334 -106971330 - L1M4c LINE L1 -4785 2174 2026 542 176 0 0 chr1 175222466 175222557 -106971107 - U6 snRNA snRNA 0 107 17 1396 231 55 91 chr1 175222600 175222676 -106970988 - L1M4c LINE L1 -4886 1969 1892 2113 110 3 0 chr1 175222676 175222967 -106970697 - AluSc SINE Alu -17 292 1 1396 231 55 91 chr1 175222967 175223097 -106970567 - L1M4c LINE L1 -4963 1892 1759 1885 151 10 6 chr1 175223097 175223408 -106970256 - AluJb SINE Alu 0 312 1 1396 231 55 91 chr1 175223408 175223732 -106969932 - L1M4c LINE L1 -5096 1759 1425 1931 89 104 0 chr1 175223732 175224012 -106969652 - AluY SINE Alu 0 311 3 1396 231 55 91 chr1 175224012 175224024 -106969640 - L1M4c LINE L1 -5430 1425 1414 2267 100 0 0 chr1 175224024 175224333 -106969331 - AluSx SINE Alu -3 309 1 1396 231 55 91 chr1 175224333 175224428 -106969236 - L1M4c LINE L1 -5441 1414 1352 278 152 0 0 chr1 175224445 175224491 -106969173 - L1M4c LINE L1 -5487 1372 1327 288 0 0 0 chr1 175224534 175224566 -106969098 + (TG)n Simple_repeat Simple_repeat 2 33 0 1958 120 3 23 chr1 175224721 175225081 -106968583 - AluSp SINE Alu 0 313 1 1422 170 40 11 chr1 175225113 175225390 -106968274 + AluJb SINE Alu 1 285 -27 21 0 0 0 chr1 175225390 175225411 -106968253 + AT_rich Low_complexity Low_complexity 1 21 0 2009 132 0 0 chr1 175225413 175225708 -106967956 + AluSx SINE Alu 1 295 -17 3320 102 8 30 chr1 175225723 175225756 -106967908 + LTR15 LTR ERV1 1 33 -460 2250 87 0 3 chr1 175225756 175226054 -106967610 + AluY SINE Alu 1 297 -14 3320 102 8 30 chr1 175226054 175226518 -106967146 + LTR15 LTR ERV1 33 487 -6 371 335 57 24 chr1 175227051 175227263 -106966401 - L1M4c LINE L1 -6630 229 11 450 319 86 76 chr1 175227266 175227308 -106966356 - L1ME3A LINE L1 -129 5992 5952 2000 105 17 0 chr1 175227308 175227602 -106966062 - AluSx SINE Alu -10 302 4 450 319 86 76 chr1 175227602 175227764 -106965900 - L1ME3A LINE L1 -169 5952 5780 2247 109 0 0 chr1 175227764 175228076 -106965588 - AluSx SINE Alu 0 312 1 450 319 86 76 chr1 175228076 175228206 -106965458 - L1ME3A LINE L1 -341 5780 5653 2152 92 16 2 chr1 175228213 175228511 -106965153 + MER4E LTR ERV1 1 395 -388 933 167 0 0 chr1 175228512 175228668 -106964996 + AluSg/x SINE Alu 135 290 -20 309 296 49 0 chr1 175228668 175228749 -106964915 - L1MC4 LINE L1 -1344 6698 6614 * 339 303 0 0 chr1 175228679 175228755 -106964909 + L1MC4 LINE L1 6614 6689 -1353 2601 168 64 4 chr1 175228755 175229226 -106964438 + MER4E LTR ERV1 281 779 0 642 269 44 59 chr1 175229226 175229517 -106964147 - L1ME3A LINE L1 -527 5637 5348 10521 32 4 103 chr1 175229639 175231168 -106962496 - SVA Other Other 0 1386 9 23 0 0 0 chr1 175231321 175231344 -106962320 + AT_rich Low_complexity Low_complexity 1 23 0 1722 146 18 4 chr1 175231344 175231619 -106962045 - AluJb SINE Alu -33 279 1 2250 99 0 0 chr1 175231624 175231926 -106961738 - AluSp SINE Alu -11 302 1 2692 78 50 3 chr1 175232055 175232415 -106961249 + MER51B LTR ERV1 1 377 0 1986 119 0 48 chr1 175232519 175232831 -106960833 + AluSg SINE Alu 1 297 -13 28 0 0 0 chr1 175232929 175232957 -106960707 + AT_rich Low_complexity Low_complexity 1 28 0 2059 112 3 3 chr1 175232970 175233265 -106960399 - AluSx SINE Alu -17 295 1 1013 170 29 34 chr1 175233314 175233520 -106960144 - AluJo SINE Alu 0 312 108 245 239 63 112 chr1 175233565 175233666 -106959998 - HAL1 LINE L1 -38 2469 2381 2001 137 0 0 chr1 175233666 175233965 -106959699 - AluSx SINE Alu -13 299 1 245 239 63 112 chr1 175233965 175234068 -106959596 - HAL1 LINE L1 -126 2381 2275 424 313 0 0 chr1 175234120 175234264 -106959400 + AluSq/x SINE Alu 2 145 -167 394 200 38 29 chr1 175234278 175234383 -106959281 - FLAM_A SINE Alu -5 128 23 858 137 0 14 chr1 175234536 175234675 -106958989 - AluSg/x SINE Alu -55 255 119 2173 103 3 0 chr1 175234681 175234992 -106958672 - AluSx SINE Alu 0 312 1 292 205 123 97 chr1 175235200 175235395 -106958269 - LTR33A LTR ERVL -267 256 57 1312 189 89 7 chr1 175235459 175235588 -106958076 + AluJo SINE Alu 6 123 -189 1352 179 90 0 chr1 175235588 175235867 -106957797 + AluJo SINE Alu 2 305 -7 1312 189 89 7 chr1 175235867 175236007 -106957657 + AluJo SINE Alu 123 297 -15 674 213 65 115 chr1 175236070 175236082 -106957582 + MLT2B1 LTR ERVL 68 79 -441 2230 109 0 0 chr1 175236082 175236386 -106957278 - AluSx SINE Alu -8 304 1 674 213 65 115 chr1 175236386 175236419 -106957245 + MLT2B1 LTR ERVL 79 112 -408 1799 149 13 29 chr1 175236419 175236734 -106956930 + AluJb SINE Alu 1 310 -2 1924 120 3 33 chr1 175236734 175236842 -106956822 + AluSx SINE Alu 2 112 -200 2212 104 0 3 chr1 175236842 175237149 -106956515 - AluSg SINE Alu -4 306 1 1924 120 3 33 chr1 175237149 175237341 -106956323 + AluSx SINE Alu 112 293 -19 674 213 65 115 chr1 175237341 175237686 -106955978 + MLT2B1 LTR ERVL 110 446 -74 26 64 0 0 chr1 175237686 175237733 -106955931 + AT_rich Low_complexity Low_complexity 1 47 0 194 183 58 0 chr1 175237748 175237868 -106955796 + (TA)n Simple_repeat Simple_repeat 1 127 0 229 94 0 0 chr1 175237883 175237915 -106955749 + MLT2B1 LTR ERVL 433 464 0 2192 74 14 7 chr1 175238035 175238331 -106955333 - AluSg1 SINE Alu -11 298 1 568 92 0 0 chr1 175238558 175238634 -106955030 + Alu SINE Alu 229 304 -8 2271 78 3 0 chr1 175238742 175239038 -106954626 + AluSp SINE Alu 1 297 -16 2071 121 3 10 chr1 175239229 175239543 -106954121 + AluSx SINE Alu 1 312 0 1644 235 93 44 chr1 175239548 175240118 -106953546 + HAL1 LINE L1 202 799 -1708 299 270 12 43 chr1 175240463 175240626 -106953038 + HAL1 LINE L1 829 986 -1521 2244 103 0 0 chr1 175240626 175240926 -106952738 + AluSq SINE Alu 1 300 -13 313 261 85 46 chr1 175241456 175241609 -106952055 + L2 LINE L2 2725 2883 -431 458 250 42 48 chr1 175241649 175241817 -106951847 + Zaphod DNA AcHobo 20 186 -3845 1968 109 15 0 chr1 175242235 175242541 -106951123 - AluSx SINE Alu 0 315 6 342 130 0 0 chr1 175242541 175242587 -106951077 + Alu SINE Alu 242 287 -14 841 97 0 0 chr1 175242588 175242701 -106950963 + AluSq/x SINE Alu 1 113 -200 1775 122 4 4 chr1 175242801 175243071 -106950593 - AluSq SINE Alu -41 272 3 506 215 94 184 chr1 175243108 175243219 -106950445 - L1M4 LINE L1 -2214 3932 3813 2154 96 0 17 chr1 175243219 175243520 -106950144 - AluSg SINE Alu -14 296 1 506 215 94 184 chr1 175243520 175243953 -106949711 - L1M4 LINE L1 -2333 3813 3437 1959 106 3 7 chr1 175243965 175244247 -106949417 - AluSq SINE Alu -32 281 1 216 0 0 0 chr1 175244270 175244294 -106949370 + (TGG)n Simple_repeat Simple_repeat 2 25 0 1297 187 113 12 chr1 175244294 175244551 -106949113 - AluJo SINE Alu -19 283 1 2230 65 21 3 chr1 175244601 175244891 -106948773 + AluY SINE Alu 1 295 -16 1037 169 15 10 chr1 175244899 175245100 -106948564 - L1 LINE L1 -1949 4197 3996 445 240 10 0 chr1 175245153 175245249 -106948415 - L2 LINE L2 -1 3312 3216 1071 281 72 11 chr1 175245250 175245692 -106947972 - L2 LINE L2 -556 2758 2290 345 279 111 6 chr1 175245700 175245872 -106947792 - L2 LINE L2 -1597 1717 1528 1009 103 0 0 chr1 175245970 175246106 -106947558 + AluSx SINE Alu 1 136 -176 1797 124 0 70 chr1 175246168 175246346 -106947318 - AluSx SINE Alu -19 293 145 1824 120 42 18 chr1 175246346 175246629 -106947035 - AluSx SINE Alu -22 290 1 1797 124 0 70 chr1 175246629 175246765 -106946899 - AluSx SINE Alu -167 145 1 843 239 53 14 chr1 175247063 175247272 -106946392 - MIR SINE MIR -19 243 27 2844 141 39 82 chr1 175247604 175247999 -106945665 - MER6A DNA MER2_type -260 605 242 252 0 0 0 chr1 175247999 175248027 -106945637 + (CA)n Simple_repeat Simple_repeat 2 29 0 2844 141 39 82 chr1 175248027 175248219 -106945445 - MER6A DNA MER2_type -623 242 43 1196 100 11 17 chr1 175248219 175248399 -106945265 + AluSx SINE Alu 132 310 0 609 110 0 11 chr1 175248420 175248511 -106945153 + AluS SINE Alu 2 91 -221 304 225 62 0 chr1 175248511 175248591 -106945073 - AluYb8 SINE Alu -116 192 108 341 103 0 69 chr1 175248734 175248792 -106944872 + MER66B LTR ERV1 293 346 -140 684 251 41 22 chr1 175248829 175249096 -106944568 - L1M4 LINE L1 -976 5170 4899 1669 181 0 3 chr1 175249144 175249432 -106944232 + AluJb SINE Alu 10 296 -16 1321 186 44 44 chr1 175249514 175250327 -106943337 + SVA Other Other 462 848 -538 25 31 0 0 chr1 175250416 175250448 -106943216 + AT_rich Low_complexity Low_complexity 1 32 0 253 35 0 0 chr1 175250646 175250675 -106942989 - LTR6A LTR ERV1 -463 101 73 2172 104 0 0 chr1 175251763 175252060 -106941604 + AluSq SINE Alu 1 297 -16 3624 101 8 4 chr1 175252144 175252650 -106941014 + MER75 DNA T2_type 3 510 -4 2379 59 0 7 chr1 175252764 175253069 -106940595 + AluY SINE Alu 1 303 -8 1957 128 7 3 chr1 175253147 175253437 -106940227 + AluSx SINE Alu 1 291 -21 2171 91 0 0 chr1 175253687 175253983 -106939681 + AluY SINE Alu 1 296 -15 1399 191 40 0 chr1 175254441 175254736 -106938928 - AluJb SINE Alu 0 306 1 954 148 12 0 chr1 175254832 175254994 -106938670 - AluSq SINE Alu -16 297 134 1736 121 37 4 chr1 175254994 175255267 -106938397 - AluSx SINE Alu -18 294 13 838 173 50 0 chr1 175256122 175256261 -106937403 - AluJo/FRAM SINE Alu -30 282 137 1918 157 0 0 chr1 175256261 175256573 -106937091 - AluSx SINE Alu 0 312 1 1104 178 56 0 chr1 175256573 175256787 -106936877 - L1MB4 LINE L1 -214 5966 5741 304 269 71 0 chr1 175256797 175256938 -106936726 - L1MC4 LINE L1 -166 7876 7726 2108 107 10 0 chr1 175257019 175257318 -106936346 + AluSc SINE Alu 1 302 -7 1371 219 6 28 chr1 175257659 175257978 -106935686 - AluJb SINE Alu 0 312 1 2158 102 3 3 chr1 175257983 175258287 -106935377 - AluSx SINE Alu -8 304 1 2132 108 0 16 chr1 175258288 175258595 -106935069 - AluSg SINE Alu -8 302 1 246 32 0 0 chr1 175258624 175258655 -106935009 + (TG)n Simple_repeat Simple_repeat 2 32 0 298 126 25 13 chr1 175258991 175259055 -106934609 + Alu SINE Alu 1 40 -261 2093 99 0 7 chr1 175259055 175259337 -106934327 + AluSx SINE Alu 5 284 -28 702 81 0 0 chr1 175259250 175259337 -106934327 + AluSg/x SINE Alu 196 322 0 266 0 75 0 chr1 175259337 175259377 -106934287 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 189 154 0 0 chr1 175260126 175260165 -106933499 + T-rich Low_complexity Low_complexity 4 42 0 1659 168 16 20 chr1 175260327 175260492 -106933172 - AluJo SINE Alu -10 302 137 1965 91 0 0 chr1 175260492 175260735 -106932929 - AluSx SINE Alu -22 290 48 1659 168 16 20 chr1 175260735 175260872 -106932792 - AluJo SINE Alu -175 137 1 1675 192 7 3 chr1 175261177 175261469 -106932195 - AluJo SINE Alu -16 296 4 261 253 213 35 chr1 175262279 175262453 -106931211 - MIR SINE MIR -52 210 6 2448 106 0 0 chr1 175263701 175264013 -106929651 - AluSx SINE Alu 0 312 1 195 42 0 0 chr1 175264203 175264227 -106929437 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 211 324 54 14 chr1 175264659 175264733 -106928931 + L3 LINE CR1 1492 1568 -9 2393 100 6 0 chr1 175266049 175266360 -106927304 - AluSq SINE Alu 0 313 1 2411 84 0 0 chr1 175268429 175268726 -106924938 - AluSx SINE Alu -10 302 6 1426 190 145 111 chr1 175269150 175269339 -106924325 - MER21B LTR ERV1 -144 787 606 1963 107 59 21 chr1 175269339 175269629 -106924035 - AluSx SINE Alu -11 301 1 1426 190 145 111 chr1 175269629 175269914 -106923750 - MER21B LTR ERV1 -325 606 332 1993 108 39 0 chr1 175269914 175270193 -106923471 - AluSq SINE Alu -23 290 1 1426 190 145 111 chr1 175270193 175270390 -106923274 - MER21B LTR ERV1 -599 332 1 2173 72 27 20 chr1 175270608 175270900 -106922764 + AluY SINE Alu 6 299 -12 187 254 36 0 chr1 175271759 175271814 -106921850 + MIR SINE MIR 31 87 -121 201 333 11 0 chr1 175272285 175272375 -106921289 + GA-rich Low_complexity Low_complexity 5 95 0 970 179 0 18 chr1 175272546 175272714 -106920950 + FRAM SINE Alu 1 165 -1 2024 93 104 0 chr1 175272731 175273011 -106920653 + AluY SINE Alu 3 311 0 1349 231 66 78 chr1 175273015 175273335 -106920329 + L1M4 LINE L1 1135 1457 -5085 2023 148 10 6 chr1 175273335 175273646 -106920018 + AluJb SINE Alu 1 312 0 1349 231 66 78 chr1 175273646 175273776 -106919888 + L1M4 LINE L1 1457 1581 -4961 2217 113 3 0 chr1 175273776 175274067 -106919597 + AluSc SINE Alu 1 292 -17 1349 231 66 78 chr1 175274067 175274143 -106919521 + L1M4 LINE L1 1581 1656 -4886 546 176 0 0 chr1 175274186 175274277 -106919387 + U6 snRNA snRNA 17 107 0 431 206 62 41 chr1 175274409 175274555 -106919109 + L1M4 LINE L1 1713 1861 -4785 766 193 0 21 chr1 175274560 175274700 -106918964 + AluJo SINE Alu 2 138 -174 301 122 0 0 chr1 175274705 175274754 -106918910 + AluSx SINE Alu 85 133 -169 2196 103 0 7 chr1 175274760 175275052 -106918612 + AluSx SINE Alu 1 290 -22 2364 78 0 0 chr1 175275058 175275361 -106918303 + AluY SINE Alu 1 303 0 1237 122 0 41 chr1 175275363 175275560 -106918104 + AluSx SINE Alu 120 308 -2 646 223 5 59 chr1 175275562 175275659 -106918005 + L1M4 LINE L1 3461 3562 -3082 2164 126 3 22 chr1 175275659 175275976 -106917688 + AluSx SINE Alu 1 311 -1 646 223 5 59 chr1 175275976 175276098 -106917566 + L1M4 LINE L1 3562 3668 -2976 833 120 0 0 chr1 175276103 175276220 -106917444 + AluSc SINE Alu 182 298 -11 319 186 71 0 chr1 175276220 175276290 -106917374 + L1M4 LINE L1 1582 1656 -4886 539 187 0 0 chr1 175276333 175276424 -106917240 + U6 snRNA snRNA 17 107 0 490 268 137 21 chr1 175276482 175276594 -106917070 + L1M4 LINE L1 3700 3798 -2846 2106 136 7 7 chr1 175276594 175276904 -106916760 + AluSx SINE Alu 3 312 0 490 268 137 21 chr1 175276904 175277119 -106916545 + L1M4 LINE L1 3798 4065 -2579 2284 92 0 0 chr1 175277121 175277434 -106916230 + AluSx SINE Alu 1 313 0 877 143 0 8 chr1 175277451 175277577 -106916087 + FLAM_C SINE Alu 1 125 -18 821 193 55 79 chr1 175277577 175277590 -106916074 - MER20B DNA MER1_type -474 309 297 2326 106 0 0 chr1 175277590 175277893 -106915771 + AluSx SINE Alu 1 303 -9 821 193 55 79 chr1 175277893 175278133 -106915531 - MER20B DNA MER1_type -486 297 62 1904 142 21 3 chr1 175278144 175278432 -106915232 - AluJb SINE Alu -19 293 1 468 271 64 7 chr1 175278432 175278572 -106915092 + HAL1 LINE L1 1314 1461 -1046 324 27 0 0 chr1 175278584 175278621 -106915043 + MER4E LTR ERV1 653 689 -77 230 206 79 0 chr1 175278640 175278703 -106914961 + HAL1 LINE L1 1475 1542 -965 * 2838 122 15 77 chr1 175278702 175278909 -106914755 + L1MA8 LINE L1 5620 5838 -453 722 198 0 0 chr1 175278909 175279035 -106914629 + FLAM_A SINE Alu 1 126 -7 2838 122 15 77 chr1 175279035 175279347 -106914317 + L1MA8 LINE L1 5838 6104 -187 2048 129 3 3 chr1 175279347 175279642 -106914022 + AluSx SINE Alu 1 295 -17 2838 122 15 77 chr1 175279642 175279697 -106913967 + L1MA8 LINE L1 6104 6161 -130 2095 120 0 48 chr1 175279784 175280093 -106913571 - AluSg SINE Alu -16 294 1 2691 78 50 3 chr1 175280197 175280557 -106913107 - MER51B LTR ERV1 0 377 1 2371 100 0 0 chr1 175280686 175280987 -106912677 + AluSp SINE Alu 1 301 -12 1833 146 18 4 chr1 175280992 175281267 -106912397 + AluJb SINE Alu 1 279 -33 23 0 0 0 chr1 175281267 175281290 -106912374 + AT_rich Low_complexity Low_complexity 1 23 0 11140 33 4 103 chr1 175281443 175282972 -106910692 + SVA Other Other 9 1386 0 647 271 43 60 chr1 175283094 175283385 -106910279 + L1ME LINE L1 5348 5637 -527 2586 168 64 4 chr1 175283385 175283856 -106909808 - MER4E LTR ERV1 0 779 281 507 132 0 0 chr1 175283856 175283947 -106909717 + (TA)n Simple_repeat Simple_repeat 2 92 0 1009 162 0 0 chr1 175283947 175284101 -106909563 - AluSg/x SINE Alu -22 290 137 1349 120 0 0 chr1 175284148 175284331 -106909333 - AluSg/x SINE Alu -17 293 111 797 237 0 0 chr1 175284644 175284800 -106908864 + FRAM SINE Alu 1 156 -10 2422 94 3 0 chr1 175285019 175285328 -106908336 - AluSq SINE Alu -3 310 1 2563 66 0 0 chr1 175285596 175285900 -106907764 + AluY SINE Alu 1 304 -7 369 240 265 20 chr1 175285977 175286173 -106907491 - MIR SINE MIR -14 248 5 908 207 16 27 chr1 175286715 175286903 -106906761 + AluJo SINE Alu 1 186 -126 186 43 0 0 chr1 175286926 175286949 -106906715 + (A)n Simple_repeat Simple_repeat 1 23 0 806 173 135 11 chr1 175287090 175287144 -106906520 - MER6B DNA MER2_type -655 210 164 1456 193 52 0 chr1 175287144 175287413 -106906251 - AluJb SINE Alu -29 283 1 806 173 135 11 chr1 175287413 175287543 -106906121 - MER6B DNA MER2_type -701 164 3 2134 118 24 3 chr1 175287633 175287929 -106905735 + AluSx SINE Alu 1 302 -10 890 144 0 0 chr1 175288916 175289041 -106904623 + AluJo/FLAM SINE Alu 1 125 -187 2156 113 3 3 chr1 175289043 175289336 -106904328 - AluSq SINE Alu -20 293 1 2240 113 3 0 chr1 175289340 175289642 -106904022 - AluSx SINE Alu -9 303 1 1996 133 4 0 chr1 175289642 175289920 -106903744 - AluSq SINE Alu -34 279 1 2207 107 0 3 chr1 175290071 175290361 -106903303 - AluSg SINE Alu -19 291 3 2316 56 45 3 chr1 175290445 175290733 -106902931 - AluY SINE Alu -11 300 1 1684 202 0 7 chr1 175293416 175293708 -106899956 + AluJo SINE Alu 1 290 -22 781 207 165 43 chr1 175294560 175294748 -106898916 + MER8 DNA MER2_type 29 239 0 21 0 0 0 chr1 175294748 175294769 -106898895 + AT_rich Low_complexity Low_complexity 1 21 0 215 222 0 22 chr1 175294882 175294927 -106898737 + (TG)n Simple_repeat Simple_repeat 1 44 0 1543 182 7 36 chr1 175295034 175295336 -106898328 - AluJo SINE Alu -19 293 1 2043 127 0 10 chr1 175296261 175296553 -106897111 - AluSg1 SINE Alu -20 289 1 861 154 0 0 chr1 175297288 175297411 -106896253 + FLAM_A SINE Alu 1 123 -10 27 0 0 0 chr1 175301803 175301830 -106891834 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr1 175302498 175302535 -106891129 + AT_rich Low_complexity Low_complexity 1 37 0 2258 100 7 3 chr1 175304214 175304514 -106889150 - AluSg SINE Alu -8 302 2 1072 122 174 136 chr1 175304570 175304857 -106888807 - AluJo SINE Alu -4 298 1 2427 87 3 3 chr1 175304943 175305252 -106888412 - AluSp SINE Alu -4 309 1 2305 109 3 0 chr1 175305252 175305554 -106888110 - AluSx SINE Alu -9 303 1 376 229 42 69 chr1 175305582 175305726 -106887938 - MIR SINE MIR -115 147 8 188 188 0 88 chr1 175306025 175306105 -106887559 + CT-rich Low_complexity Low_complexity 5 77 0 210 37 0 0 chr1 175307823 175307850 -106885814 + (T)n Simple_repeat Simple_repeat 1 27 0 1035 56 56 0 chr1 175308389 175308532 -106885132 + L1PB2 LINE L1 6001 6151 0 1945 92 29 4 chr1 175308727 175308999 -106884665 + AluSq SINE Alu 34 312 -1 195 42 0 0 chr1 175310214 175310238 -106883426 + (A)n Simple_repeat Simple_repeat 1 24 0 1742 82 0 5 chr1 175311089 175311308 -106882356 + AluSq SINE Alu 1 218 -95 2025 136 3 0 chr1 175311323 175311610 -106882054 - AluSx SINE Alu -24 288 1 180 167 0 0 chr1 175313113 175313131 -106880533 + A-rich Low_complexity Low_complexity 1 18 -18 2315 96 36 0 chr1 175313131 175313432 -106880232 + AluSq SINE Alu 1 312 -1 180 167 0 0 chr1 175313432 175313449 -106880215 + A-rich Low_complexity Low_complexity 17 36 0 2178 138 0 0 chr1 175313661 175313950 -106879714 + AluSq SINE Alu 1 289 -24 988 146 51 0 chr1 175314000 175314158 -106879506 - AluJb SINE Alu -18 294 129 339 65 0 0 chr1 175314192 175314238 -106879426 - AluJb SINE Alu -170 132 87 462 259 93 0 chr1 175314265 175314373 -106879291 + FLAM_A SINE Alu 2 119 -14 216 0 0 0 chr1 175314373 175314397 -106879267 + (TA)n Simple_repeat Simple_repeat 2 25 0 2495 79 0 0 chr1 175314397 175314700 -106878964 - AluSg SINE Alu -7 303 1 29 47 0 0 chr1 175314739 175314782 -106878882 + AT_rich Low_complexity Low_complexity 1 43 0 1867 132 52 7 chr1 175314813 175315100 -106878564 - AluSq SINE Alu -11 302 3 1377 133 0 0 chr1 175315227 175315423 -106878241 + AluSg/x SINE Alu 115 310 -2 268 250 0 0 chr1 175315431 175315487 -106878177 + MER58 DNA MER1_type 12 67 -148 445 183 95 48 chr1 175315528 175315654 -106878010 + L1ME3A LINE L1 5892 6023 -147 2139 120 3 0 chr1 175315655 175315963 -106877701 - AluSx SINE Alu 0 309 1 1421 234 80 76 chr1 175315983 175316101 -106877563 - L1ME3 LINE L1 -2 6160 6044 2386 100 0 0 chr1 175316101 175316401 -106877263 - AluSp SINE Alu -12 301 2 1421 234 80 76 chr1 175316401 175316885 -106876779 - L1ME3 LINE L1 -118 6044 5556 2351 84 3 7 chr1 175316904 175317200 -106876464 + AluY SINE Alu 17 311 0 2045 117 3 20 chr1 175317216 175317515 -106876149 + AluY SINE Alu 6 299 -12 861 67 45 15 chr1 175317516 175317650 -106876014 - MER30 DNA MER1_type -92 138 1 2455 77 0 10 chr1 175317941 175318241 -106875423 - AluY SINE Alu -14 297 1 1953 161 3 0 chr1 175318298 175318589 -106875075 - AluJo SINE Alu -20 292 1 2184 102 3 0 chr1 175320066 175320386 -106873278 + AluSx SINE Alu 1 321 0 1324 111 6 0 chr1 175320386 175320557 -106873107 + AluSq SINE Alu 1 172 -141 303 247 27 27 chr1 175320640 175320713 -106872951 - L1 LINE L1 -1333 4813 4741 442 188 148 20 chr1 175320778 175320927 -106872737 + HAL1 LINE L1 796 963 -1544 1066 179 9 114 chr1 175320936 175321260 -106872404 - AluJb SINE Alu -11 291 2 2234 108 3 10 chr1 175321263 175321570 -106872094 - AluSp SINE Alu -8 305 1 672 225 6 28 chr1 175321571 175321749 -106871915 - L1MB5 LINE L1 -91 6083 5910 1475 86 32 0 chr1 175321749 175321935 -106871729 - AluSq SINE Alu -117 196 5 562 246 8 0 chr1 175321948 175322070 -106871594 - AluJb SINE Alu -188 124 2 286 103 0 0 chr1 175322219 175322258 -106871406 + Alu SINE Alu 250 288 -14 2558 61 0 0 chr1 175322273 175322567 -106871097 + AluY SINE Alu 1 294 -17 362 301 19 0 chr1 175322567 175322670 -106870994 - L1 LINE L1 -2911 3235 3131 1783 98 42 119 chr1 175322670 175323005 -106870659 - AluSx SINE Alu -1 311 3 2021 130 0 17 chr1 175323017 175323318 -106870346 - AluSx SINE Alu 0 312 17 310 136 20 140 chr1 175323318 175323427 -106870237 + AluS SINE Alu 1 65 -238 1849 110 4 19 chr1 175323449 175323712 -106869952 - AluSg SINE Alu 0 310 52 1838 207 9 39 chr1 175323857 175324320 -106869344 - LTR2 LTR ERV1 0 449 1 2075 94 9 78 chr1 175324548 175324868 -106868796 - AluSg SINE Alu -12 298 1 1800 171 4 4 chr1 175324918 175325222 -106868442 - AluJb SINE Alu 0 309 6 2279 115 0 0 chr1 175325234 175325538 -106868126 - AluSp SINE Alu -5 308 5 227 87 0 0 chr1 175325548 175325594 -106868070 - L1MA8 LINE L1 0 6291 6246 2554 78 0 0 chr1 175325625 175325933 -106867731 + AluY SINE Alu 1 308 -3 1459 162 4 17 chr1 175326003 175326238 -106867426 + AluJo SINE Alu 1 232 -80 23 0 0 0 chr1 175326238 175326261 -106867403 + AT_rich Low_complexity Low_complexity 1 23 0 873 216 13 0 chr1 175326261 175326414 -106867250 - AluJb SINE Alu -24 288 134 243 0 0 0 chr1 175326414 175326441 -106867223 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1754 141 80 0 chr1 175326441 175326703 -106866961 - AluSq SINE Alu -30 283 1 2076 136 0 13 chr1 175326716 175326881 -106866783 - AluSx SINE Alu -14 298 137 2234 108 3 10 chr1 175326881 175327188 -106866476 - AluSp SINE Alu -8 305 1 2076 136 0 13 chr1 175327188 175327323 -106866341 - AluSx SINE Alu -175 137 2 1024 130 14 72 chr1 175327366 175327520 -106866144 + L1MB5 LINE L1 5545 5686 -488 2394 96 0 0 chr1 175327520 175327813 -106865851 - AluSq SINE Alu -20 293 1 1024 130 14 72 chr1 175327813 175327865 -106865799 + L1MB5 LINE L1 5686 5739 -435 911 146 18 18 chr1 175327867 175328032 -106865632 + FAM SINE Alu 2 166 -9 2290 115 0 13 chr1 175328041 175328355 -106865309 + AluSg SINE Alu 1 310 0 903 173 33 75 chr1 175328363 175328577 -106865087 - AluJo SINE Alu -23 289 85 286 73 24 0 chr1 175328577 175328618 -106865046 - AluSp/q SINE Alu -53 250 209 1056 60 0 45 chr1 175328646 175328780 -106864884 - AluSg SINE Alu -182 128 1 749 215 6 23 chr1 175328781 175328958 -106864706 - L1MB5 LINE L1 -91 6083 5910 1475 86 32 0 chr1 175328958 175329144 -106864520 - AluSq SINE Alu -117 196 5 562 246 8 0 chr1 175329157 175329279 -106864385 - AluJb SINE Alu -188 124 2 1677 174 63 40 chr1 175329297 175329643 -106864021 + L1MB5 LINE L1 5727 6086 -88 2304 120 0 0 chr1 175329643 175329951 -106863713 + AluSg SINE Alu 1 308 -2 1677 174 63 40 chr1 175329951 175330029 -106863635 + L1MB5 LINE L1 6086 6161 -13 2056 157 68 100 chr1 175330029 175330127 -106863537 - Charlie1 DNA MER1_type -37 2724 2624 1894 139 61 0 chr1 175330127 175330407 -106863257 + AluSg SINE Alu 1 297 -13 2043 163 0 0 chr1 175330413 175330713 -106862951 + AluSx SINE Alu 5 304 -8 2056 157 68 100 chr1 175330713 175330817 -106862847 - Charlie1 DNA MER1_type -142 2619 2513 2042 130 23 29 chr1 175330817 175331125 -106862539 - AluSx SINE Alu -6 306 1 2056 157 68 100 chr1 175331125 175331383 -106862281 - Charlie1 DNA MER1_type -248 2513 2248 1433 214 7 16 chr1 175331383 175331553 -106862111 - AluJo SINE Alu -7 305 138 1540 172 45 28 chr1 175331553 175331843 -106861821 - AluJb SINE Alu -17 295 1 1433 214 7 16 chr1 175331843 175331980 -106861684 - AluJo SINE Alu -174 138 1 2056 157 68 100 chr1 175331980 175332048 -106861616 - Charlie1 DNA MER1_type -513 2248 2179 2335 92 10 10 chr1 175332048 175332352 -106861312 - AluSg SINE Alu -6 304 1 2056 157 68 100 chr1 175332352 175332596 -106861068 - Charlie1 DNA MER1_type -582 2179 1967 4601 84 4 29 chr1 175332891 175332947 -106860717 - MER4A LTR ERV1 0 664 608 2597 69 0 0 chr1 175332947 175333251 -106860413 + AluY SINE Alu 1 304 -7 4601 84 4 29 chr1 175333251 175333875 -106859789 - MER4A LTR ERV1 -56 608 1 1623 123 92 65 chr1 175333913 175334206 -106859458 - AluJb SINE Alu -11 301 1 1233 123 0 22 chr1 175334480 175334659 -106859005 - AluSg/x SINE Alu -2 308 134 1668 200 37 0 chr1 175334738 175335038 -106858626 + AluSx SINE Alu 1 311 -1 326 145 174 0 chr1 175335038 175335107 -106858557 - MLT1B LTR MaLR -309 81 1 630 178 8 0 chr1 175335247 175335365 -106858299 + FLAM_A SINE Alu 11 129 -13 3906 118 16 32 chr1 175335588 175335712 -106857952 - MER41B LTR ERV1 0 635 510 1813 169 16 19 chr1 175335712 175336025 -106857639 + AluSx SINE Alu 1 312 0 3906 118 16 32 chr1 175336025 175336073 -106857591 - MER41B LTR ERV1 -125 510 463 2403 93 33 16 chr1 175336073 175336439 -106857225 + THE1C LTR MaLR 1 372 -3 3906 118 16 32 chr1 175336439 175336911 -106856753 - MER41B LTR ERV1 -172 463 1 335 282 40 86 chr1 175336909 175337083 -106856581 + MER115 DNA AcHobo 1 166 -527 * 308 326 0 0 chr1 175337087 175337173 -106856491 + MER5C DNA MER1_type 8 93 -231 2297 99 16 0 chr1 175337178 175337482 -106856182 + AluSp SINE Alu 1 309 -4 2296 111 0 7 chr1 175337499 175337805 -106855859 + AluSp SINE Alu 3 306 -7 1095 96 0 0 chr1 175337807 175337943 -106855721 + AluSq/x SINE Alu 1 136 -176 2479 90 0 0 chr1 175337943 175338254 -106855410 + AluY SINE Alu 1 311 0 309 164 0 55 chr1 175338338 175338411 -106855253 + MER5C DNA MER1_type 206 274 -50 2161 131 13 0 chr1 175338447 175338745 -106854919 + AluSx SINE Alu 1 302 -10 660 282 102 22 chr1 175338791 175339241 -106854423 + MER115 DNA AcHobo 176 693 0 2277 118 0 0 chr1 175340224 175340530 -106853134 - AluSx SINE Alu -6 306 1 333 0 0 0 chr1 175340532 175340569 -106853095 + (TG)n Simple_repeat Simple_repeat 2 38 0 2152 117 0 3 chr1 175340574 175340864 -106852800 - AluSq SINE Alu -24 289 1 717 305 60 67 chr1 175341545 175342290 -106851374 - L2 LINE L2 -864 2450 1711 190 259 35 24 chr1 175342485 175342570 -106851094 - L2 LINE L2 -1903 1411 1326 823 106 0 63 chr1 175343693 175343835 -106849829 - FLAM_C SINE Alu 0 133 1 218 95 24 0 chr1 175344649 175344691 -106848973 + (TA)n Simple_repeat Simple_repeat 2 44 0 2309 117 10 3 chr1 175345417 175345725 -106847939 + AluSg SINE Alu 1 310 0 894 240 115 113 chr1 175347508 175347833 -106845831 + L2 LINE L2 2231 2554 -759 2449 67 14 3 chr1 175347833 175348130 -106845534 - AluSp SINE Alu -13 300 1 894 240 115 113 chr1 175348130 175348591 -106845073 + L2 LINE L2 2554 3017 -296 2141 69 28 58 chr1 175348599 175348919 -106844745 + AluSx SINE Alu 1 311 0 287 220 140 20 chr1 175350113 175350213 -106843451 - L2 LINE L2 -6 3266 3155 779 233 40 22 chr1 175351926 175352149 -106841515 + L1MA9 LINE L1 6048 6274 -38 1845 104 8 0 chr1 175353985 175354226 -106839438 - AluSq SINE Alu -15 298 56 1906 154 3 27 chr1 175354290 175354589 -106839075 - AluJb SINE Alu -20 292 1 1992 150 20 0 chr1 175355592 175355892 -106837772 - AluJo SINE Alu -6 306 1 235 242 66 94 chr1 175356416 175356548 -106837116 - MIR SINE MIR -64 144 35 401 67 50 0 chr1 175356989 175357049 -106836615 - U7 snRNA snRNA 0 63 1 2273 103 13 6 chr1 175357101 175357412 -106836252 - AluSq SINE Alu 0 313 1 285 346 31 25 chr1 175357871 175358033 -106835631 + L2 LINE L2 3151 3313 0 436 134 268 0 chr1 175358555 175358637 -106835027 - MER30 DNA MER1_type 0 230 127 25 0 0 0 chr1 175358659 175358684 -106834980 + AT_rich Low_complexity Low_complexity 1 25 0 2066 125 0 10 chr1 175358692 175358995 -106834669 + AluSx SINE Alu 1 300 -12 2052 88 3 45 chr1 175358995 175359303 -106834361 + AluSg SINE Alu 1 295 -15 866 67 37 8 chr1 175359304 175359438 -106834226 - MER30 DNA MER1_type -92 138 1 2331 73 0 10 chr1 175359729 175360029 -106833635 - AluY SINE Alu -14 297 1 1832 161 3 0 chr1 175360086 175360377 -106833287 - AluJo SINE Alu -20 292 1 1915 108 45 3 chr1 175361852 175362139 -106831525 + AluSq SINE Alu 1 299 -14 929 152 0 13 chr1 175362256 175362414 -106831250 - AluSc SINE Alu -9 300 145 1729 111 0 69 chr1 175362516 175362804 -106830860 - AluSq SINE Alu -33 280 13 1584 147 0 80 chr1 175363276 175363589 -106830075 - AluJo SINE Alu -20 292 5 210 229 21 0 chr1 175364613 175364661 -106829003 + G-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr1 175367050 175367071 -106826593 + GC_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr1 175370115 175370144 -106823520 + (CCTCG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr1 175370157 175370180 -106823484 + GC_rich Low_complexity Low_complexity 1 23 0 22 109 0 0 chr1 175370190 175370282 -106823382 + GC_rich Low_complexity Low_complexity 1 92 0 209 232 0 73 chr1 175370308 175370390 -106823274 + G-rich Low_complexity Low_complexity 3 78 0 269 297 114 59 chr1 175372887 175373046 -106820618 - MIR SINE MIR -10 252 78 2114 110 10 0 chr1 175373046 175373356 -106820308 + AluSq SINE Alu 1 313 0 269 297 114 59 chr1 175373356 175373398 -106820266 - MIR SINE MIR -184 78 40 262 362 6 17 chr1 175373916 175374093 -106819571 + GA-rich Low_complexity Low_complexity 4 178 0 1800 67 74 7 chr1 175374101 175374386 -106819278 + MER41-int LTR ERV1 5065 5368 -578 209 260 0 27 chr1 175374423 175374496 -106819168 + GA-rich Low_complexity Low_complexity 5 75 0 334 375 36 0 chr1 175374995 175375106 -106818558 - MIR SINE MIR -53 209 89 2005 104 16 36 chr1 175375106 175375300 -106818364 - AluSx SINE Alu -11 301 114 1868 81 23 8 chr1 175375300 175375560 -106818104 + AluSc SINE Alu 39 302 -7 2005 104 16 36 chr1 175375560 175375672 -106817992 - AluSx SINE Alu -198 114 1 334 375 36 0 chr1 175375672 175375728 -106817936 - MIR SINE MIR -173 89 36 377 213 50 12 chr1 175376081 175376161 -106817503 - L2 LINE L2 -54 3218 3136 658 355 24 15 chr1 175376304 175376635 -106817029 + LTR16A LTR ERVL 3 336 -114 2217 63 0 17 chr1 175376635 175376705 -106816959 - MER41A LTR ERV1 0 554 484 2256 84 10 3 chr1 175376705 175377003 -106816661 + AluY SINE Alu 1 300 -11 2217 63 0 17 chr1 175377003 175377231 -106816433 - MER41A LTR ERV1 -70 484 261 983 130 0 0 chr1 175377252 175377398 -106816266 - MER41A LTR ERV1 -408 146 1 11375 99 25 42 chr1 175377398 175377569 -106816095 - MER41A-int LTR ERV1 -2 5944 5772 1969 112 20 10 chr1 175377569 175377865 -106815799 + AluSq SINE Alu 1 299 -14 11375 99 25 42 chr1 175377865 175379301 -106814363 - MER41A-int LTR ERV1 -174 5772 4314 1997 128 10 0 chr1 175379301 175379598 -106814066 + AluSx SINE Alu 1 300 -12 11375 99 25 42 chr1 175379598 175379810 -106813854 - MER41A-int LTR ERV1 -1632 4314 4100 2229 102 0 16 chr1 175379810 175380123 -106813541 - AluSg SINE Alu -2 308 1 11375 99 25 42 chr1 175380123 175380224 -106813440 - MER41A-int LTR ERV1 -1846 4100 3999 2102 118 13 0 chr1 175380224 175380530 -106813134 - AluSx SINE Alu 0 312 3 11375 99 25 42 chr1 175380530 175380882 -106812782 - MER41A-int LTR ERV1 -1947 3999 1374 2181 93 7 0 chr1 175380882 175381208 -106812456 + AluSp SINE Alu 1 328 0 2899 87 10 0 chr1 175381230 175381632 -106812032 - MER41A LTR ERV1 -44 510 105 2040 135 0 0 chr1 175381632 175381928 -106811736 - AluSx SINE Alu -16 296 1 329 281 52 0 chr1 175381929 175382025 -106811639 - MIR SINE MIR -79 183 83 2184 104 0 7 chr1 175382216 175382523 -106811141 + AluSx SINE Alu 1 305 -7 349 319 0 39 chr1 175383131 175383313 -106810351 + GA-rich Low_complexity Low_complexity 4 178 0 1309 48 0 0 chr1 175383644 175383811 -106809853 + MER11B LTR ERVK 1 167 -1069 1997 111 0 0 chr1 175383818 175384116 -106809548 + AluSx SINE Alu 13 310 0 334 367 35 12 chr1 175384318 175384430 -106809234 - MIR SINE MIR -54 208 89 1978 142 6 3 chr1 175384430 175384741 -106808923 - AluSx SINE Alu 0 312 1 334 367 35 12 chr1 175384741 175384797 -106808867 - MIR SINE MIR -173 89 36 2212 81 3 3 chr1 175384993 175385291 -106808373 + AluSc SINE Alu 1 298 -11 378 171 53 13 chr1 175385461 175385537 -106808127 - L2 LINE L2 -55 3258 3180 2227 85 10 0 chr1 175385549 175385844 -106807820 - AluSp SINE Alu -15 298 1 410 159 0 0 chr1 175385875 175385938 -106807726 + AluS SINE Alu 2 64 -254 875 143 14 0 chr1 175385948 175386095 -106807569 + AluSp/q SINE Alu 165 313 0 718 271 55 51 chr1 175386120 175386393 -106807271 + ERVL LTR ERVL 361 634 -4362 189 0 0 0 chr1 175386403 175386424 -106807240 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 474 18 0 0 chr1 175386423 175386478 -106807186 + (TG)n Simple_repeat Simple_repeat 2 56 0 920 147 0 39 chr1 175386478 175386492 -106807172 - FRAM SINE Alu -163 149 136 2289 90 49 57 chr1 175386492 175386708 -106806956 - THE1B LTR MaLR 0 364 151 1964 140 0 3 chr1 175386708 175387015 -106806649 + AluSq SINE Alu 1 306 -7 2289 90 49 57 chr1 175387015 175387165 -106806499 - THE1B LTR MaLR -213 151 1 920 147 0 39 chr1 175387165 175387306 -106806358 - FRAM SINE Alu -176 136 1 540 333 14 44 chr1 175387337 175387682 -106805982 + ERVL LTR ERVL 709 1020 -3976 3206 95 2 11 chr1 175387682 175388134 -106805530 - LTR8 LTR ERV1 0 691 244 713 128 77 0 chr1 175388134 175388251 -106805413 - AluSg/x SINE Alu -12 300 175 566 322 12 50 chr1 175388252 175388510 -106805154 + ERVL LTR ERVL 2388 2635 -2361 180 0 0 0 chr1 175388519 175388539 -106805125 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1912 128 4 0 chr1 175388544 175388818 -106804846 - AluSx SINE Alu -37 275 1 2289 96 3 0 chr1 175388836 175389137 -106804527 - AluSq SINE Alu -11 302 1 1354 279 67 94 chr1 175389138 175389931 -106803733 + ERVL LTR ERVL 2632 3465 -2299 252 93 0 0 chr1 175389931 175389974 -106803690 + Alu SINE Alu 259 301 -1 1354 279 67 94 chr1 175389974 175390371 -106803293 + ERVL LTR ERVL 3465 3871 -1893 852 135 28 7 chr1 175390481 175390622 -106803042 + FRAM SINE Alu 1 143 -33 359 303 70 7 chr1 175390627 175390833 -106802831 + ERVL LTR ERVL 3659 4213 -1108 806 161 0 0 chr1 175390833 175390963 -106802701 + MLT2B3 LTR ERVL 1 130 -424 386 75 0 17 chr1 175390984 175391050 -106802614 + MLT2C2 LTR ERVL 408 464 0 725 287 97 26 chr1 175391051 175391319 -106802345 + ERVL LTR ERVL 4211 4497 -1267 2020 141 0 3 chr1 175391325 175391637 -106802027 + AluSx SINE Alu 1 311 -1 1972 107 43 4 chr1 175391734 175392015 -106801649 - AluSq SINE Alu -16 297 6 2215 110 0 0 chr1 175392018 175392319 -106801345 - AluSx SINE Alu -11 301 1 2136 105 0 3 chr1 175392319 175392614 -106801050 - AluSq SINE Alu -19 294 1 833 180 12 19 chr1 175392614 175392775 -106800889 - FRAM SINE Alu -18 158 1 275 343 27 58 chr1 175392775 175393067 -106800597 + ERVL LTR ERVL 5099 5381 -383 2270 84 0 23 chr1 175393177 175393485 -106800179 + AluSq SINE Alu 1 301 -12 1139 151 0 0 chr1 175393486 175393665 -106799999 + AluSg/x SINE Alu 132 310 0 2235 69 3 10 chr1 175393677 175393966 -106799698 + AluSg1 SINE Alu 9 295 -14 670 337 90 12 chr1 175393992 175394327 -106799337 + LTR16A1 LTR ERVL 1 361 -96 1907 120 4 7 chr1 175394348 175394623 -106799041 + AluSx SINE Alu 2 275 -37 387 0 0 0 chr1 175394689 175394732 -106798932 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 717 186 0 8 chr1 175394733 175394851 -106798813 - FLAM_C SINE Alu -24 119 3 279 305 9 29 chr1 175394932 175395037 -106798627 - LTR16A1 LTR ERVL 0 457 355 499 144 189 0 chr1 175395039 175395129 -106798535 + FLAM_C SINE Alu 2 108 -35 352 44 0 0 chr1 175395171 175395216 -106798448 - MER41B LTR ERV1 -113 522 478 792 161 0 29 chr1 175395248 175395385 -106798279 + FLAM_C SINE Alu 1 133 0 1940 141 0 7 chr1 175395429 175395727 -106797937 + AluJb SINE Alu 1 296 -16 2101 114 0 16 chr1 175395876 175396184 -106797480 - AluSq SINE Alu -10 303 1 585 228 52 103 chr1 175396191 175396246 -106797418 + MER20B DNA MER1_type 6 62 -721 1789 166 14 0 chr1 175396246 175396535 -106797129 + AluJb SINE Alu 1 293 -19 585 228 52 103 chr1 175396535 175396751 -106796913 + MER20B DNA MER1_type 62 263 -520 1076 155 0 0 chr1 175396902 175397076 -106796588 - AluSg/x SINE Alu -5 307 134 2012 98 0 63 chr1 175397076 175397391 -106796273 - AluSq SINE Alu -6 307 13 1570 150 0 80 chr1 175397863 175398176 -106795488 - AluJo SINE Alu -20 292 5 210 229 21 0 chr1 175399200 175399248 -106794416 + G-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr1 175401637 175401658 -106792006 + GC_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr1 175404702 175404731 -106788933 + (CCTCG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr1 175404744 175404767 -106788897 + GC_rich Low_complexity Low_complexity 1 23 0 22 109 0 0 chr1 175404777 175404869 -106788795 + GC_rich Low_complexity Low_complexity 1 92 0 209 232 0 73 chr1 175404895 175404977 -106788687 + G-rich Low_complexity Low_complexity 3 78 0 284 264 148 52 chr1 175407474 175407629 -106786035 - MIR SINE MIR -10 252 83 2239 110 10 0 chr1 175407633 175407942 -106785722 + AluSq SINE Alu 1 312 -1 276 356 6 17 chr1 175408507 175408684 -106784980 + GA-rich Low_complexity Low_complexity 4 178 0 1843 67 74 7 chr1 175408692 175408977 -106784687 + MER41-int LTR ERV1 5065 5368 -578 203 313 12 0 chr1 175408978 175409061 -106784603 + A-rich Low_complexity Low_complexity 3 86 0 * 209 260 0 27 chr1 175409014 175409087 -106784577 + GA-rich Low_complexity Low_complexity 5 75 0 262 321 134 0 chr1 175409586 175409698 -106783966 - MIR SINE MIR -53 209 83 2223 108 0 10 chr1 175409698 175409993 -106783671 - AluSx SINE Alu -12 300 9 1186 158 0 0 chr1 175410007 175410184 -106783480 - AluSg/x SINE Alu -2 310 134 2374 88 0 23 chr1 175410185 175410493 -106783171 - AluSq SINE Alu -12 301 1 888 176 13 19 chr1 175410897 175411056 -106782608 + FRAM SINE Alu 1 158 -18 2257 105 0 3 chr1 175411056 175411351 -106782313 + AluSq SINE Alu 1 294 -19 2240 121 0 0 chr1 175411351 175411648 -106782016 + AluSx SINE Alu 1 297 -15 761 175 41 41 chr1 175411716 175411735 -106781929 + AluJo SINE Alu 119 137 -175 2252 112 0 13 chr1 175411735 175412047 -106781617 + AluY SINE Alu 1 308 -3 761 175 41 41 chr1 175412047 175412198 -106781466 + AluJo SINE Alu 136 289 -23 1377 136 19 9 chr1 175412204 175412418 -106781246 - AluY SINE Alu 0 311 96 954 257 44 12 chr1 175412773 175413022 -106780642 - MIR SINE MIR -5 257 1 254 100 0 0 chr1 175413181 175413221 -106780443 - L1MB4 LINE L1 -8 6172 6133 1257 182 55 17 chr1 175413221 175413457 -106780207 - AluJo SINE Alu -13 299 55 3266 129 15 6 chr1 175413466 175414009 -106779655 - L1MB3 LINE L1 -41 6142 5595 2195 113 0 0 chr1 175414020 175414342 -106779322 - AluSx SINE Alu 0 322 1 992 186 0 6 chr1 175414345 175414512 -106779152 - FRAM SINE Alu -12 164 1 446 298 67 11 chr1 175415099 175415277 -106778387 + MIR3 SINE MIR 3 190 -18 437 252 125 29 chr1 175415570 175415751 -106777913 + MIR SINE MIR 18 212 -50 2357 103 6 0 chr1 175415870 175416181 -106777483 - AluSq SINE Alu 0 313 1 485 300 21 0 chr1 175416189 175416329 -106777335 - MIR SINE MIR -65 197 55 307 188 0 25 chr1 175417122 175417202 -106776462 + CT-rich Low_complexity Low_complexity 3 80 0 1683 177 13 13 chr1 175417206 175417516 -106776148 - AluJb SINE Alu 0 312 3 332 286 99 65 chr1 175417560 175417793 -106775871 - MIR SINE MIR -8 254 11 545 246 16 0 chr1 175417841 175417963 -106775701 + MER5B DNA MER1_type 55 178 0 203 233 14 41 chr1 175418462 175418535 -106775129 + (CCCG)n Simple_repeat Simple_repeat 3 73 0 404 294 22 37 chr1 175421040 175421176 -106772488 + MER5A DNA MER1_type 56 189 0 1104 172 14 42 chr1 175421749 175421810 -106771854 - MER3 DNA MER1_type 0 209 148 1603 158 48 11 chr1 175421810 175422083 -106771581 + AluJb SINE Alu 7 289 -23 1104 172 14 42 chr1 175422083 175422236 -106771428 - MER3 DNA MER1_type -61 148 1 503 276 44 44 chr1 175422377 175422580 -106771084 + MIR SINE MIR 60 262 0 * 841 245 28 73 chr1 175422577 175422904 -106770760 - L2 LINE L2 0 3313 3002 1873 159 7 7 chr1 175423196 175423492 -106770172 - AluJb SINE Alu -16 296 1 351 290 46 38 chr1 175423816 175423947 -106769717 - MIR SINE MIR -1 261 130 559 287 20 15 chr1 175423953 175424001 -106769663 - L2 LINE L2 -938 2376 2330 2121 107 17 7 chr1 175424001 175424301 -106769363 - AluSx SINE Alu -9 303 1 559 287 20 15 chr1 175424301 175424447 -106769217 - L2 LINE L2 -984 2330 2181 203 277 32 43 chr1 175424541 175424635 -106769029 + MIR SINE MIR 16 108 -100 898 220 0 0 chr1 175424663 175424836 -106768828 + FRAM SINE Alu 1 173 -3 811 243 34 30 chr1 175424889 175425185 -106768479 - AluY SINE Alu -1 300 4 243 95 95 127 chr1 175425317 175425380 -106768284 - AluSp SINE Alu -133 170 110 572 92 0 0 chr1 175425578 175425654 -106768010 + Alu SINE Alu 229 304 -8 2414 78 3 0 chr1 175425762 175426058 -106767606 + AluSp SINE Alu 1 297 -16 2229 121 3 10 chr1 175426249 175426563 -106767101 + AluSx SINE Alu 1 312 0 1498 234 85 37 chr1 175426568 175427086 -106766578 + HAL1 LINE L1 202 744 -1763 275 270 12 43 chr1 175427483 175427646 -106766018 + HAL1 LINE L1 829 986 -1521 2293 119 7 0 chr1 175427646 175427956 -106765708 + AluSx SINE Alu 1 312 0 252 324 144 0 chr1 175427957 175428068 -106765596 + MIR SINE MIR 82 208 -54 2190 120 0 0 chr1 175428270 175428580 -106765084 - AluSx SINE Alu 0 310 1 10329 91 22 28 chr1 175428586 175430016 -106763648 + MER41A-int LTR ERV1 4353 5773 -173 2088 112 20 10 chr1 175430016 175430312 -106763352 - AluSq SINE Alu -14 299 1 10329 91 22 28 chr1 175430312 175430483 -106763181 + MER41A-int LTR ERV1 5773 5944 -2 941 158 0 0 chr1 175430483 175430629 -106763035 + MER41A LTR ERV1 1 146 -408 2115 81 3 17 chr1 175430650 175430877 -106762787 + MER41A LTR ERV1 261 485 -69 2370 87 10 3 chr1 175430877 175431175 -106762489 - AluY SINE Alu -11 300 1 2115 81 3 17 chr1 175431175 175431245 -106762419 + MER41A LTR ERV1 485 554 0 554 327 42 12 chr1 175431245 175431576 -106762088 - LTR16A1 LTR ERVL -114 336 3 398 225 50 12 chr1 175431719 175431799 -106761865 + L2 LINE L2 3136 3218 -54 249 274 32 16 chr1 175432147 175432209 -106761455 + MIR SINE MIR 33 95 -113 898 88 0 0 chr1 175432209 175432322 -106761342 + AluSq/x SINE Alu 2 114 -198 1439 78 47 11 chr1 175432322 175432513 -106761151 - AluSc SINE Alu -15 294 97 28 29 0 0 chr1 175432624 175432659 -106761005 + AT_rich Low_complexity Low_complexity 1 35 0 2036 163 0 0 chr1 175432674 175432974 -106760690 - AluSx SINE Alu -8 304 5 2176 109 14 3 chr1 175432980 175433274 -106760390 - AluSx SINE Alu -13 299 3 431 216 94 184 chr1 175433311 175433422 -106760242 - L1M4 LINE L1 -2214 3932 3813 2267 96 0 20 chr1 175433422 175433724 -106759940 - AluSg SINE Alu -14 296 1 431 216 94 184 chr1 175433724 175434157 -106759507 - L1M4 LINE L1 -2333 3813 3437 990 142 0 14 chr1 175434169 175434317 -106759347 - AluSq SINE Alu -32 281 136 456 339 16 47 chr1 175434371 175434693 -106758971 + ERVL LTR ERVL 709 1020 -3976 3173 95 2 11 chr1 175434693 175435145 -106758519 - LTR8 LTR ERV1 0 691 244 715 128 77 0 chr1 175435145 175435262 -106758402 - AluSg/x SINE Alu -12 300 175 476 277 26 69 chr1 175435276 175435528 -106758136 + ERVL LTR ERVL 2399 2613 -2383 180 0 0 0 chr1 175435530 175435550 -106758114 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2029 128 4 0 chr1 175435555 175435829 -106757835 - AluSx SINE Alu -37 275 1 2426 96 3 0 chr1 175435847 175436148 -106757516 - AluSq SINE Alu -11 302 1 1146 283 28 46 chr1 175436160 175436901 -106756763 + ERVL LTR ERVL 2643 3409 -2245 254 93 0 0 chr1 175436943 175436986 -106756678 + Alu SINE Alu 259 301 -1 925 311 26 13 chr1 175437001 175437383 -106756281 + ERVL LTR ERVL 3485 3871 -1893 909 135 28 7 chr1 175437492 175437633 -106756031 + FRAM SINE Alu 1 143 -33 322 286 75 8 chr1 175437660 175437843 -106755821 + ERVL LTR ERVL 3681 4213 -1121 792 161 0 0 chr1 175437844 175437974 -106755690 + MLT2B3 LTR ERVL 1 130 -424 387 75 0 17 chr1 175437995 175438061 -106755603 + MLT2C2 LTR ERVL 408 464 0 650 287 97 26 chr1 175438062 175438330 -106755334 + ERVL LTR ERVL 4211 4497 -1267 2147 141 0 3 chr1 175438336 175438648 -106755016 + AluSx SINE Alu 1 311 -1 1881 133 14 14 chr1 175438747 175439026 -106754638 - AluSq SINE Alu -18 295 17 295 136 20 140 chr1 175439026 175439135 -106754529 + AluS SINE Alu 1 65 -238 1850 110 4 19 chr1 175439157 175439420 -106754244 - AluSg SINE Alu 0 310 52 1904 211 9 41 chr1 175439565 175440029 -106753635 - LTR2 LTR ERV1 0 449 1 2377 94 3 0 chr1 175440258 175440557 -106753107 - AluSx SINE Alu -12 300 1 1104 108 13 19 chr1 175440566 175440723 -106752941 - AluSg/x SINE Alu -23 287 132 803 165 120 6 chr1 175440723 175440881 -106752783 + MER6 DNA MER2_type 43 218 -647 873 191 11 28 chr1 175440968 175441146 -106752518 + AluJo SINE Alu 120 294 -18 919 211 4 43 chr1 175441146 175441425 -106752239 + AluSq SINE Alu 1 268 -45 409 203 51 13 chr1 175441708 175441787 -106751877 - L2 LINE L2 -55 3217 3136 2319 88 10 0 chr1 175441796 175442091 -106751573 - AluSp SINE Alu -15 298 1 2311 104 0 19 chr1 175442094 175442411 -106751253 - AluSx SINE Alu -1 311 1 267 164 0 30 chr1 175442438 175442505 -106751159 - L1M4b LINE L1 -5438 1421 1357 265 152 0 0 chr1 175442522 175442568 -106751096 - L1M4b LINE L1 -5487 1372 1327 285 29 0 0 chr1 175442611 175442645 -106751019 + (TG)n Simple_repeat Simple_repeat 2 35 0 2109 119 3 23 chr1 175442800 175443148 -106750516 - AluSp SINE Alu 0 313 5 1572 178 38 10 chr1 175443184 175443477 -106750187 + AluJb SINE Alu 1 301 -11 2156 132 0 0 chr1 175443484 175443779 -106749885 + AluSx SINE Alu 1 295 -17 3138 104 8 30 chr1 175443793 175443826 -106749838 + LTR15 LTR ERV1 1 33 -460 2405 87 0 3 chr1 175443826 175444125 -106749539 + AluY SINE Alu 1 298 -13 3138 104 8 30 chr1 175444125 175444589 -106749075 + LTR15 LTR ERV1 33 487 -6 339 335 57 24 chr1 175445122 175445334 -106748330 - L1M4b LINE L1 -6630 229 11 308 384 17 41 chr1 175445354 175445376 -106748288 - L1ME LINE L1 -369 5801 5780 2264 112 7 0 chr1 175445376 175445679 -106747985 - AluSx SINE Alu -7 305 1 308 384 17 41 chr1 175445679 175445828 -106747836 - L1ME LINE L1 -390 5780 5634 1508 98 18 0 chr1 175445828 175446052 -106747612 + MER4E LTR ERV1 1 228 -551 1628 206 3 7 chr1 175446352 175446639 -106747025 + AluJo SINE Alu 5 290 -22 2388 85 0 13 chr1 175446741 175447048 -106746616 - AluSx SINE Alu -9 303 1 672 284 18 18 chr1 175447157 175447375 -106746289 - MIR SINE MIR -10 252 35 808 272 120 45 chr1 175447421 175447499 -106746165 - L1MC4a LINE L1 -1972 5836 5765 2413 86 0 0 chr1 175447499 175447790 -106745874 - AluSg SINE Alu -19 291 1 808 272 120 45 chr1 175447790 175448244 -106745420 - L1MC4a LINE L1 -2043 5765 5264 210 171 0 0 chr1 175448306 175448347 -106745317 + CT-rich Low_complexity Low_complexity 4 44 0 1703 137 3 77 chr1 175448347 175448647 -106745017 - AluJo SINE Alu -34 278 1 25 0 0 0 chr1 175448737 175448762 -106744902 + AT_rich Low_complexity Low_complexity 1 25 0 836 168 28 0 chr1 175449995 175450138 -106743526 + AluJb SINE Alu 145 291 -21 1636 109 149 33 chr1 175450138 175450414 -106743250 + AluSg1 SINE Alu 1 308 -1 2146 107 0 10 chr1 175450421 175450720 -106742944 + AluSq SINE Alu 1 296 -17 344 331 87 0 chr1 175450725 175450852 -106742812 + HAL1 LINE L1 17 154 -2353 21 36 0 0 chr1 175451013 175451041 -106742623 + AT_rich Low_complexity Low_complexity 1 28 0 1742 151 13 34 chr1 175451044 175451342 -106742322 + AluJo SINE Alu 1 292 -20 2381 99 0 0 chr1 175451344 175451672 -106741992 + AluSp SINE Alu 1 328 0 2142 83 0 0 chr1 175451694 175451983 -106741681 - MER41A LTR ERV1 -44 510 222 2302 120 0 13 chr1 175452204 175452512 -106741152 - AluSq SINE Alu -9 304 1 2073 136 0 13 chr1 175452525 175452690 -106740974 - AluSx SINE Alu -14 298 137 2224 108 3 10 chr1 175452690 175452997 -106740667 - AluSp SINE Alu -8 305 1 2073 136 0 13 chr1 175452997 175453132 -106740532 - AluSx SINE Alu -175 137 2 838 161 13 0 chr1 175453175 175453324 -106740340 + L1M4 LINE L1 5545 5695 -479 724 147 0 0 chr1 175453329 175453431 -106740233 - AluSp/q SINE Alu -20 293 192 230 75 0 0 chr1 175453467 175453507 -106740157 - L1MA8 LINE L1 -6 6285 6246 1303 142 0 10 chr1 175453538 175453742 -106739922 + AluY SINE Alu 1 202 -109 415 153 24 47 chr1 175453930 175454015 -106739649 - AluSg SINE Alu -226 84 2 968 139 7 13 chr1 175454025 175454176 -106739488 - FAM SINE Alu -20 165 16 301 108 20 5 chr1 175454182 175454241 -106739423 - L1MC/D LINE L1 -435 5739 5688 2145 139 0 0 chr1 175454242 175454551 -106739113 + AluSp SINE Alu 1 309 -4 1620 174 4 4 chr1 175454563 175454822 -106738842 + AluJb SINE Alu 6 264 -48 1269 158 137 13 chr1 175454917 175455151 -106738513 + AluJo SINE Alu 1 263 -49 304 156 0 0 chr1 175655393 175655438 -106538226 - Alu SINE Alu -254 46 2 2426 94 3 0 chr1 175655477 175655786 -106537878 + AluSp SINE Alu 1 310 -3 279 344 11 0 chr1 175656070 175656160 -106537504 + Tigger8 DNA MER2_type 35 125 -541 318 278 40 9 chr1 175656850 175656990 -106536674 - MIR SINE MIR -62 146 19 1112 230 83 94 chr1 175659201 175659406 -106534258 - L1ME3A LINE L1 0 6170 5964 2367 93 0 3 chr1 175659406 175659716 -106533948 - AluSc SINE Alu 0 309 1 1112 230 83 94 chr1 175659716 175660024 -106533640 - L1ME3A LINE L1 -206 5964 5666 404 203 97 54 chr1 175660051 175660267 -106533397 - L1ME3A LINE L1 -642 5520 5296 281 269 39 29 chr1 175660469 175660573 -106533091 + L2 LINE L2 2620 2724 -590 232 335 94 13 chr1 175660796 175661020 -106532644 + L2 LINE L2 2736 2977 -337 232 170 0 38 chr1 175662062 175662115 -106531549 + L1P LINE L1 3993 4043 -2103 263 228 0 0 chr1 175662173 175662230 -106531434 + HsTC2 DNA Tc2 6 62 -1836 21 0 0 0 chr1 175662343 175662364 -106531300 + AT_rich Low_complexity Low_complexity 1 21 0 2918 22 0 0 chr1 175662571 175662889 -106530775 - AluYb8 SINE Alu 0 318 1 1783 152 23 23 chr1 175662889 175663191 -106530473 - AluJb SINE Alu -10 302 1 584 256 62 14 chr1 175663386 175663597 -106530067 - L2 LINE L2 -1 3312 3092 2447 170 16 12 chr1 175663599 175664023 -106529641 - MSTB LTR MaLR 0 426 1 1109 211 54 36 chr1 175664041 175664321 -106529343 - L1MB7 LINE L1 0 6184 5900 194 0 39 0 chr1 175664323 175664349 -106529315 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2187 116 0 0 chr1 175664349 175664634 -106529030 - AluSx SINE Alu -27 285 1 1391 198 0 4 chr1 175664644 175664886 -106528778 - AluJb SINE Alu -25 287 47 1950 142 10 3 chr1 175665124 175665412 -106528252 - AluJb SINE Alu -11 301 12 322 275 64 37 chr1 175665441 175665824 -106527840 - L1MCc LINE L1 -4961 1462 1317 1138 88 0 0 chr1 175666156 175666303 -106527361 + AluSg/x SINE Alu 166 312 0 1283 98 39 97 chr1 175667257 175667736 -106525928 + MER4A LTR ERV1 8 596 -68 6396 117 17 52 chr1 175667841 175668031 -106525633 + L1MC1 LINE L1 5135 5330 -1003 548 47 9 112 chr1 175668031 175668101 -106525563 + L1MA5 LINE L1 6204 6261 -39 2379 88 13 3 chr1 175668101 175668406 -106525258 - AluY SINE Alu -3 308 1 548 47 9 112 chr1 175668406 175668442 -106525222 + L1MA5 LINE L1 6261 6299 -1 6396 117 17 52 chr1 175668442 175668810 -106524854 + L1MC1 LINE L1 5330 5709 -624 1649 192 84 50 chr1 175668810 175668971 -106524693 + MSTD LTR MaLR 3 157 -239 1605 159 22 47 chr1 175668971 175669291 -106524373 + AluJo SINE Alu 1 312 0 1649 192 84 50 chr1 175669291 175669509 -106524155 + MSTD LTR MaLR 157 395 -1 6396 117 17 52 chr1 175669509 175670182 -106523482 + L1MC1 LINE L1 5709 6326 -7 201 121 0 0 chr1 175670193 175670226 -106523438 + (GGA)n Simple_repeat Simple_repeat 3 35 0 2436 146 19 19 chr1 175670266 175670699 -106522965 + L1PA16 LINE L1 5716 6148 -18 1159 277 43 15 chr1 175670769 175671098 -106522566 + HAL1 LINE L1 417 754 -1753 402 306 16 0 chr1 175671103 175671227 -106522437 + MER5B DNA MER1_type 6 131 -47 1686 239 38 87 chr1 175671252 175671506 -106522158 - L1MEc LINE L1 -2838 3377 3112 264 30 0 0 chr1 175671506 175671539 -106522125 + (TG)n Simple_repeat Simple_repeat 2 34 0 1686 239 38 87 chr1 175671539 175672271 -106521393 - L1MEc LINE L1 -3103 3112 2459 1282 167 0 5 chr1 175672272 175672503 -106521161 - AluJb SINE Alu 0 313 84 796 257 83 32 chr1 175672543 175673076 -106520588 - L1MEc LINE L1 -3954 2442 1883 551 321 36 0 chr1 175673082 175673359 -106520305 - L1MEc LINE L1 -4598 1798 1512 2020 77 0 8 chr1 175673365 175673613 -106520051 + AluSx SINE Alu 1 246 -66 21 71 0 0 chr1 175673986 175674028 -106519636 + AT_rich Low_complexity Low_complexity 1 42 0 2177 251 115 72 chr1 175674314 175674727 -106518937 - L1ME3A LINE L1 -336 5834 5440 2061 200 44 47 chr1 175674727 175675276 -106518388 - LTR55 LTR ERV -1 547 1 2177 251 115 72 chr1 175675276 175676404 -106517260 - L1ME3A LINE L1 -730 5440 4144 2483 74 0 0 chr1 175676404 175676700 -106516964 + AluY SINE Alu 1 296 -15 2177 251 115 72 chr1 175676700 175677347 -106516317 - L1ME3A LINE L1 -2026 4144 3526 629 226 38 0 chr1 175677348 175677481 -106516183 + FLAM_A SINE Alu 1 138 -4 391 323 68 0 chr1 175677496 175677744 -106515920 - L1ME3A LINE L1 -2605 3541 3277 240 269 196 50 chr1 175677893 175678112 -106515552 + MLT1I LTR MaLR 157 407 -2 899 220 86 21 chr1 175678132 175678505 -106515159 - L1ME3A LINE L1 -2875 3271 2875 1310 133 60 32 chr1 175678515 175678733 -106514931 + AluJo SINE Alu 2 225 -87 313 335 80 11 chr1 175678929 175679105 -106514559 + L1MC/D LINE L1 4153 4340 -1806 238 265 38 38 chr1 175679751 175679883 -106513781 + L1MC/D LINE L1 4903 5034 -1112 2231 110 0 0 chr1 175679896 175680187 -106513477 + AluSx SINE Alu 1 291 -21 434 275 189 47 chr1 175680189 175680422 -106513242 + MLT1L LTR MaLR 4 269 -346 221 340 0 0 chr1 175680730 175680780 -106512884 - L2 LINE L2 -96 3176 3127 2112 166 181 68 chr1 175680792 175681051 -106512613 + L1ME2 LINE L1 5419 5647 -517 1090 91 41 71 chr1 175681051 175681195 -106512469 + L1MB2 LINE L1 5979 6117 -54 2314 102 0 0 chr1 175681195 175681489 -106512175 + AluSg1 SINE Alu 1 294 -15 1090 91 41 71 chr1 175681489 175681541 -106512123 + L1MB2 LINE L1 6117 6169 -2 2112 166 181 68 chr1 175681541 175681918 -106511746 + L1ME2 LINE L1 5647 6127 -37 21 36 0 0 chr1 175682174 175682202 -106511462 + AT_rich Low_complexity Low_complexity 1 28 0 241 242 102 86 chr1 175682590 175682846 -106510818 + L1MC/D LINE L1 5297 5556 -2252 277 209 0 15 chr1 175683512 175683579 -106510085 + MIR SINE MIR 187 252 -10 438 184 57 132 chr1 175683878 175684106 -106509558 - L2 LINE L2 0 3313 3103 304 267 118 84 chr1 175684100 175684396 -106509268 - L2 LINE L2 -53 3219 2914 * 2296 92 0 35 chr1 175684789 175685105 -106508559 + AluSx SINE Alu 1 305 -7 714 212 48 53 chr1 175685114 175685303 -106508361 + MLT1K LTR MaLR 378 565 -23 264 284 47 14 chr1 175686046 175686194 -106507470 - L2 LINE L2 -329 2984 2832 3049 156 12 26 chr1 175686272 175686854 -106506810 - L1MB8 LINE L1 -10 6168 5595 504 274 100 26 chr1 175687042 175687352 -106506312 + L2 LINE L2 2127 2459 -855 1053 192 63 121 chr1 175689841 175689948 -106503716 + MER113 DNA MER1_type? 1 113 -408 1475 163 3 78 chr1 175689948 175690267 -106503397 + AluJo SINE Alu 1 295 -17 1053 192 63 121 chr1 175690267 175690571 -106503093 + MER113 DNA MER1_type? 113 388 -133 335 179 0 0 chr1 175691375 175691431 -106502233 + MER3 DNA MER1_type 36 91 -118 897 307 53 8 chr1 175691754 175692129 -106501535 - L2 LINE L2 -668 2646 2255 2328 109 3 0 chr1 175692160 175692463 -106501201 + AluSx SINE Alu 8 311 -1 207 349 23 8 chr1 175692845 175692977 -106500687 + L3b LINE CR1 1317 1450 -133 2180 120 7 0 chr1 175693182 175693481 -106500183 - AluSx SINE Alu -11 301 1 663 126 117 0 chr1 175693991 175694102 -106499562 + LTR47A LTR ERVL 261 384 -68 5332 153 62 46 chr1 175694251 175695448 -106498216 + Tigger3b DNA MER2_type 2 1217 -14 2061 129 11 0 chr1 175695552 175695839 -106497825 - AluSx SINE Alu -22 290 1 219 307 129 21 chr1 175696663 175696803 -106496861 + L2 LINE L2 2897 3051 -221 248 290 0 0 chr1 175697440 175697502 -106496162 + L3 LINE CR1 1514 1575 -2 2369 89 3 3 chr1 175699454 175699758 -106493906 - AluSg SINE Alu -6 304 1 2413 93 0 0 chr1 175699772 175700072 -106493592 - AluSg SINE Alu -10 300 1 245 184 0 0 chr1 175703382 175703420 -106490244 - MER58 DNA MER1_type 0 2420 2383 393 319 106 46 chr1 175704059 175704514 -106489150 + L2 LINE L2 2145 2626 -688 182 246 77 31 chr1 175704578 175704643 -106489021 + L2 LINE L2 2991 3058 -214 268 265 163 0 chr1 175704874 175704972 -106488692 + L2 LINE L2 3157 3270 -2 226 281 85 0 chr1 175705220 175705302 -106488362 + L1MC4a LINE L1 5720 5808 -362 1923 65 25 115 chr1 175705310 175705631 -106488033 - AluSc SINE Alu -17 292 1 324 297 76 72 chr1 175705648 175705884 -106487780 + L1MC4a LINE L1 5817 6053 -1755 26 0 0 0 chr1 175706233 175706259 -106487405 + AT_rich Low_complexity Low_complexity 1 26 0 1831 199 71 19 chr1 175706268 175706689 -106486975 - L1ME1 LINE L1 -8 6158 5716 249 33 0 0 chr1 175707022 175707052 -106486612 + (CA)n Simple_repeat Simple_repeat 2 31 0 1950 106 0 42 chr1 175707629 175707941 -106485723 - AluSq SINE Alu -14 299 1 497 192 67 10 chr1 175708314 175708418 -106485246 - MIR SINE MIR -36 226 117 182 237 0 105 chr1 175708622 175708698 -106484966 - L3b LINE CR1 -171 1412 1345 220 273 13 13 chr1 175708786 175708863 -106484801 + L2 LINE L2 2906 2982 -290 329 254 0 14 chr1 175709025 175709096 -106484568 - L2 LINE L2 0 3272 3203 2171 68 10 3 chr1 175709332 175709624 -106484040 + AluY SINE Alu 1 294 -17 365 274 15 40 chr1 175709714 175709915 -106483749 - L1MEc LINE L1 -3526 2689 2494 560 301 89 71 chr1 175709922 175710361 -106483303 - L1MEc LINE L1 -3910 2486 2040 1465 196 136 11 chr1 175710376 175710728 -106482936 + MSTD LTR MaLR 1 396 0 269 245 94 28 chr1 175711074 175711180 -106482484 - MLT1K LTR MaLR -9 579 467 2219 251 161 21 chr1 175711190 175711683 -106481981 - MER21B LTR ERV1 -80 783 168 1469 135 0 0 chr1 175711683 175711898 -106481766 - AluSg/x SINE Alu -12 298 84 2219 251 161 21 chr1 175711898 175712081 -106481583 - MER21B LTR ERV1 -695 168 12 485 282 109 25 chr1 175712301 175712503 -106481161 - MLT1K LTR MaLR -341 247 29 296 310 43 26 chr1 175713647 175713763 -106479901 + MIR3 SINE MIR 52 169 -39 304 279 88 41 chr1 175714594 175714741 -106478923 - MER5B DNA MER1_type 0 178 25 223 336 45 18 chr1 175715517 175715627 -106478037 + MIR SINE MIR 60 172 -90 23 0 0 0 chr1 175715876 175715899 -106477765 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 175716870 175716891 -106476773 + AT_rich Low_complexity Low_complexity 1 21 0 187 188 16 31 chr1 175717047 175717111 -106476553 + (TATG)n Simple_repeat Simple_repeat 2 64 0 666 159 166 13 chr1 175717863 175718020 -106475644 - MER5A DNA MER1_type 0 189 9 1923 96 57 27 chr1 175718224 175718525 -106475139 + AluY SINE Alu 1 310 -1 30 45 0 0 chr1 175719990 175720034 -106473630 + AT_rich Low_complexity Low_complexity 1 44 0 438 20 0 0 chr1 175720387 175720438 -106473226 + (TA)n Simple_repeat Simple_repeat 2 52 0 2092 109 14 0 chr1 175722509 175722803 -106470861 - AluSx SINE Alu -14 298 1 202 128 0 26 chr1 175723443 175723482 -106470182 + (CA)n Simple_repeat Simple_repeat 1 38 0 247 289 67 19 chr1 175726416 175726520 -106467144 + MIR SINE MIR 46 154 -108 373 202 40 65 chr1 175726707 175726831 -106466833 + LTR16A LTR ERVL 281 401 -49 325 336 0 9 chr1 175727583 175727699 -106465965 + MIR SINE MIR 24 138 -70 181 304 18 18 chr1 175727802 175727858 -106465806 + L2 LINE L2 1391 1446 -1868 7329 24 0 0 chr1 175728401 175729236 -106464428 + L1PA4 LINE L1 5318 6152 -3 247 233 17 17 chr1 175729422 175729482 -106464182 + MLT1K LTR MaLR 183 242 -346 787 128 0 53 chr1 175729612 175729800 -106463864 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 378 0 0 0 chr1 175731692 175731734 -106461930 + (TG)n Simple_repeat Simple_repeat 2 43 0 2087 105 16 0 chr1 175732241 175732547 -106461117 + AluSq SINE Alu 1 311 -2 609 59 39 20 chr1 175732615 175732717 -106460947 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 182 219 395 9 chr1 175734067 175734181 -106459483 + MIR SINE MIR 25 182 -80 615 245 132 8 chr1 175734202 175734372 -106459292 - MIR SINE MIR -9 253 61 347 306 35 28 chr1 175734393 175734537 -106459127 - MIR3 SINE MIR -12 196 52 392 325 16 8 chr1 175735485 175735608 -106458056 - MIR SINE MIR -2 260 137 395 311 15 7 chr1 175735642 175735777 -106457887 - L2 LINE L2 -1 3312 3177 257 191 70 96 chr1 175735860 175735975 -106457689 + MIR SINE MIR 151 262 0 1160 176 161 11 chr1 175736405 175736666 -106456998 - MER7A DNA MER2_type -48 298 1 220 284 125 0 chr1 175737282 175737370 -106456294 + MIR3 SINE MIR 109 207 -1 222 318 78 50 chr1 175737744 175738165 -106455499 - L2 LINE L2 -550 2764 2332 2387 80 0 3 chr1 175738371 175738684 -106454980 - AluSx SINE Alu 0 312 1 2028 105 0 23 chr1 175739469 175739775 -106453889 - AluSc SINE Alu -10 299 1 2277 89 7 0 chr1 175739809 175740113 -106453551 - AluSg SINE Alu -4 306 1 2083 65 20 7 chr1 175741940 175742232 -106451432 - AluSc SINE Alu -12 297 2 2139 111 0 0 chr1 175742621 175742918 -106450746 - AluY SINE Alu -11 300 4 228 305 19 38 chr1 175745297 175745402 -106448262 + L3 LINE CR1 1471 1573 -4 434 170 11 0 chr1 175745665 175745759 -106447905 + GA-rich Low_complexity Low_complexity 2 96 0 181 152 0 0 chr1 175748939 175748972 -106444692 + MIR SINE MIR 109 141 -67 256 348 111 0 chr1 175749453 175749634 -106444030 - MIR3 SINE MIR 0 208 8 298 261 87 0 chr1 175750919 175751011 -106442653 - L2 LINE L2 -31 3241 3142 323 262 255 0 chr1 175751799 175751940 -106441724 - MIR SINE MIR -12 250 74 195 321 77 48 chr1 175751977 175752186 -106441478 - L2 LINE L2 -384 2930 2716 349 296 233 16 chr1 175753158 175753347 -106440317 + MIR SINE MIR 33 262 0 196 327 93 31 chr1 175753496 175753658 -106440006 - L2 LINE L2 -559 2755 2584 555 201 220 54 chr1 175754517 175754831 -106438833 + HAL1 LINE L1 807 1172 -1335 853 187 37 37 chr1 175754835 175755022 -106438642 + AluJo SINE Alu 120 306 -6 4008 223 61 51 chr1 175755023 175756241 -106437423 + HAL1 LINE L1 1187 2416 -91 1556 206 98 72 chr1 175756614 175757142 -106436522 + MLT1F LTR MaLR 1 542 0 487 281 91 15 chr1 175757143 175757342 -106436322 - L1ME3A LINE L1 -266 5904 5691 910 178 0 0 chr1 175757366 175757518 -106436146 - FRAM SINE Alu -24 152 1 1174 274 75 17 chr1 175757560 175758420 -106435244 - L1ME3A LINE L1 -505 5659 4747 224 220 0 20 chr1 175758436 175758486 -106435178 + L2 LINE L2 3263 3311 -2 700 245 135 10 chr1 175759431 175759639 -106434025 + MIR SINE MIR 26 259 -3 269 276 115 58 chr1 175759666 175759840 -106433824 + MIR SINE MIR 7 190 -72 340 222 94 0 chr1 175760078 175760195 -106433469 + L2 LINE L2 2481 2608 -706 456 289 209 14 chr1 175760266 175760616 -106433048 + L2 LINE L2 2538 2955 -359 1894 199 61 5 chr1 175760621 175760998 -106432666 + MER47B DNA MER2_type 20 417 -1 872 264 23 30 chr1 175761027 175761292 -106432372 + L2 LINE L2 3008 3270 -43 216 0 0 0 chr1 175761295 175761319 -106432345 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 485 269 76 6 chr1 175762965 175763188 -106430476 + MIR SINE MIR 1 250 -12 298 215 20 74 chr1 175763584 175763733 -106429931 + CT-rich Low_complexity Low_complexity 2 142 0 269 246 161 8 chr1 175764322 175764452 -106429212 + L2 LINE L2 2612 2761 -553 225 298 107 30 chr1 175765616 175765747 -106427917 - MIR SINE MIR 0 262 122 1257 157 0 5 chr1 175765748 175765952 -106427712 + AluJo SINE Alu 1 203 -109 222 354 10 10 chr1 175765961 175766057 -106427607 - MIR SINE MIR -152 110 15 412 223 43 0 chr1 175766231 175766325 -106427339 - MER91C DNA MER1_type 0 140 43 183 204 0 0 chr1 175766743 175766792 -106426872 + GA-rich Low_complexity Low_complexity 2 50 0 256 292 10 10 chr1 175767596 175767692 -106425972 + MIR3 SINE MIR 106 201 -7 190 211 19 58 chr1 175768053 175768105 -106425559 - MIR3 SINE MIR -49 159 110 531 287 13 33 chr1 175768197 175768347 -106425317 + MIR3 SINE MIR 41 187 -21 183 162 0 0 chr1 175769209 175769246 -106424418 + (ATG)n Simple_repeat Simple_repeat 2 38 0 217 281 52 52 chr1 175769576 175769672 -106423992 + MIR SINE MIR 77 152 -56 251 283 0 0 chr1 175769847 175769907 -106423757 + MIR SINE MIR 92 151 -111 276 319 11 0 chr1 175770979 175771070 -106422594 - MIR SINE MIR -150 112 21 1581 237 116 13 chr1 175771470 175771926 -106421738 + MLT1J LTR MaLR 7 509 -2 456 314 81 0 chr1 175772082 175772254 -106421410 + L2 LINE L2 2561 2746 -568 1310 210 53 20 chr1 175772260 175772560 -106421104 + AluJo SINE Alu 3 312 0 754 152 22 22 chr1 175772564 175772742 -106420922 + GA-rich Low_complexity Low_complexity 1 178 0 663 195 10 16 chr1 175772766 175773275 -106420389 + GA-rich Low_complexity Low_complexity 1 506 0 540 206 0 0 chr1 175773287 175773423 -106420241 + GA-rich Low_complexity Low_complexity 3 138 0 531 317 80 71 chr1 175773517 175773994 -106419670 + L2 LINE L2 2816 3296 -17 383 298 228 8 chr1 175774798 175775053 -106418611 + L3 LINE CR1 979 1289 -288 484 283 86 16 chr1 175775226 175775413 -106418251 + L3 LINE CR1 1287 1486 -91 2155 116 0 0 chr1 175775977 175776288 -106417376 - AluSx SINE Alu -1 311 1 479 183 9 52 chr1 175776711 175776826 -106416838 + MER105 DNA DNA 28 137 -67 2192 187 86 29 chr1 175776933 175777073 -106416591 - L1M4 LINE L1 -453 5731 5600 2191 104 0 13 chr1 175777073 175777209 -106416455 + AluSx SINE Alu 1 137 -175 2084 113 0 3 chr1 175777209 175777509 -106416155 + AluSg SINE Alu 1 299 -11 2191 104 0 13 chr1 175777509 175777681 -106415983 + AluSx SINE Alu 137 305 -7 2192 187 86 29 chr1 175777681 175778118 -106415546 - L1M4 LINE L1 -584 5600 5189 1749 166 0 3 chr1 175778118 175778407 -106415257 + AluJb SINE Alu 1 288 -24 2192 187 86 29 chr1 175778407 175778737 -106414927 - L1M4 LINE L1 -995 5189 4768 3467 211 41 31 chr1 175778737 175779505 -106414159 - L1M4 LINE L1 -1779 4367 3621 2190 120 0 0 chr1 175779505 175779813 -106413851 - AluSx SINE Alu 0 312 5 3467 211 41 31 chr1 175779813 175780128 -106413536 - L1M4 LINE L1 -2525 3621 3311 848 240 32 68 chr1 175780140 175780324 -106413340 + MLT1A1 LTR MaLR 4 116 -249 2137 116 3 0 chr1 175780324 175780634 -106413030 - AluSx SINE Alu -1 311 1 848 240 32 68 chr1 175780634 175780876 -106412788 + MLT1A1 LTR MaLR 116 365 0 2284 200 57 56 chr1 175780876 175781154 -106412510 - L1M4 LINE L1 -2840 3306 3030 2168 89 0 3 chr1 175781154 175781446 -106412218 - AluSq SINE Alu -22 291 1 2284 200 57 56 chr1 175781446 175781902 -106411762 - L1M4 LINE L1 -3116 3030 2571 298 260 66 75 chr1 175781918 175782145 -106411519 - MLT1I LTR MaLR -12 537 313 1765 92 52 4 chr1 175782198 175782497 -106411167 - AluSx SINE Alu 0 312 1 6541 196 32 21 chr1 175782534 175784331 -106409333 - L1M4 LINE L1 -2191 4191 2335 2189 72 3 7 chr1 175784331 175784652 -106409012 + AluY SINE Alu 1 320 0 6541 196 32 21 chr1 175784652 175785660 -106408004 - L1M4 LINE L1 -4047 2335 1339 2624 195 25 15 chr1 175785627 175786146 -106407518 - L1MD2 LINE L1 -212 6383 5860 * 396 275 82 9 chr1 175786133 175786366 -106407298 - L1MD2 LINE L1 -1422 4707 4458 * 680 157 53 217 chr1 175786454 175786754 -106406910 - MLT1I LTR MaLR -63 346 107 261 0 0 0 chr1 175786769 175786798 -106406866 + (TC)n Simple_repeat Simple_repeat 2 30 0 258 32 0 0 chr1 175786797 175786828 -106406836 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 448 186 0 0 chr1 175786877 175786947 -106406717 + MLT1H1 LTR MaLR 204 273 -282 982 285 78 28 chr1 175786973 175787588 -106406076 - L1MD2 LINE L1 -2502 3627 2982 1299 285 89 58 chr1 175787626 175787813 -106405851 - L1MD2 LINE L1 -5167 952 772 2467 54 0 13 chr1 175787813 175788127 -106405537 - AluY SINE Alu -1 310 1 1299 285 89 58 chr1 175788127 175788862 -106404802 - L1MD2 LINE L1 -5347 772 2 594 272 64 12 chr1 175788862 175789035 -106404629 + L2 LINE L2 1824 2005 -1309 684 183 8 32 chr1 175789697 175789823 -106403841 - FRAM SINE Alu -59 117 1 1266 253 186 28 chr1 175789988 175790446 -106403218 + MLT1E LTR MaLR 22 551 -42 301 340 174 23 chr1 175790529 175790794 -106402870 - L1ME4a LINE L1 -6 6115 5811 285 183 0 0 chr1 175790795 175790855 -106402809 - L1ME4a LINE L1 -2 6119 6060 1793 111 92 0 chr1 175790875 175791146 -106402518 + AluSg SINE Alu 1 296 -14 29 0 0 0 chr1 175791154 175791183 -106402481 + AT_rich Low_complexity Low_complexity 1 29 0 467 274 80 45 chr1 175792181 175792382 -106401282 + MIR SINE MIR 53 260 -2 368 228 146 29 chr1 175793006 175793177 -106400487 + L1M4 LINE L1 4378 4568 -1578 302 266 154 12 chr1 175793349 175793518 -106400146 + L2 LINE L2 2598 2790 -524 2983 154 17 6 chr1 175793676 175794157 -106399507 + MER66B LTR ERV1 1 486 0 2094 87 0 34 chr1 175794274 175794572 -106399092 + AluSc SINE Alu 1 288 -21 2241 86 0 7 chr1 175794708 175795011 -106398653 - AluSq SINE Alu -12 301 1 704 170 144 13 chr1 175795012 175795165 -106398499 + LTR47A LTR ERVL 280 452 0 233 154 0 26 chr1 175795307 175795346 -106398318 + MIR SINE MIR 117 154 -108 1018 184 99 137 chr1 175795505 175795953 -106397711 + MER110 LTR ERV1 80 491 0 832 247 6 0 chr1 175796053 175796223 -106397441 - MIR SINE MIR -70 192 22 231 196 54 0 chr1 175796246 175796302 -106397362 - L1MC4 LINE L1 -2 8040 7982 1984 84 60 21 chr1 175796308 175796593 -106397071 + AluSx SINE Alu 1 296 -16 2563 253 46 2 chr1 175796605 175797241 -106396423 - L1MC4 LINE L1 -152 7890 7227 491 217 16 101 chr1 175797208 175797317 -106396347 - L1MC4 LINE L1 -728 7089 6972 * 1728 169 26 3 chr1 175797317 175797619 -106396045 - AluSx SINE Alu -3 309 1 491 217 16 101 chr1 175797619 175797718 -106395946 - L1MC4 LINE L1 -845 6972 6873 2076 106 0 0 chr1 175797718 175798023 -106395641 - AluSq SINE Alu 0 305 1 491 217 16 101 chr1 175798023 175798056 -106395608 - L1MC4 LINE L1 -944 6873 6839 912 158 0 0 chr1 175798462 175798595 -106395069 + FLAM_C SINE Alu 1 133 0 318 125 18 18 chr1 175799228 175799284 -106394380 - MER5A DNA MER1_type 0 189 134 1056 214 4 9 chr1 175799288 175799528 -106394136 + AluJb SINE Alu 1 227 -85 28403 94 22 32 chr1 175799528 175805852 -106387812 + HERV9 LTR ERV1 1 4944 0 748 170 47 47 chr1 175805853 175806153 -106387511 + HERV9 LTR ERV1 840 1139 -5757 316 180 0 0 chr1 175806154 175806215 -106387449 + HERV9 LTR ERV1 7504 7564 -835 * 5913 116 33 27 chr1 175806211 175807857 -106385807 + pTR5 LTR ERV1 504 8399 0 306 224 41 31 chr1 175807857 175807955 -106385709 + LTR30 LTR ERV1 544 642 -80 2299 104 3 0 chr1 175807955 175808281 -106385383 + pTR5 LTR ERV1 66 392 -2046 465 52 0 0 chr1 175808281 175808339 -106385325 + AluJb SINE Alu 238 295 -17 710 148 7 70 chr1 175808340 175808374 -106385290 - MER5A DNA MER1_type -54 135 100 3571 117 18 4 chr1 175808374 175808878 -106384786 + MER9 LTR ERVK 1 511 0 710 148 7 70 chr1 175808878 175808985 -106384679 - MER5A DNA MER1_type -89 100 3 554 269 127 5 chr1 175808985 175809163 -106384501 - MIR SINE MIR -60 202 1 2340 94 3 7 chr1 175809407 175809715 -106383949 + AluY SINE Alu 1 307 -4 2041 141 10 16 chr1 175810463 175810776 -106382888 + AluJb SINE Alu 1 311 -1 1390 180 49 90 chr1 175811749 175812115 -106381549 + MLT1A1 LTR MaLR 4 354 -11 2086 139 7 0 chr1 175812293 175812602 -106381062 - AluY SINE Alu 0 311 1 346 291 39 19 chr1 175812623 175812726 -106380938 - MIR SINE MIR -145 117 13 429 275 168 13 chr1 175812743 175812892 -106380772 - MER5B DNA MER1_type -6 172 1 1044 96 28 62 chr1 175813215 175813353 -106380311 + AluY SINE Alu 140 281 -30 207 0 0 0 chr1 175813353 175813376 -106380288 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1044 96 28 62 chr1 175813376 175813389 -106380275 + AluY SINE Alu 281 293 -18 2497 72 3 0 chr1 175813389 175813693 -106379971 + AluY SINE Alu 1 305 -6 1044 96 28 62 chr1 175813693 175813717 -106379947 + AluY SINE Alu 293 310 -1 2493 75 0 7 chr1 175814305 175814613 -106379051 - AluSg SINE Alu -4 306 1 577 265 25 31 chr1 175815037 175815199 -106378465 - MIR SINE MIR -55 207 47 1967 57 0 0 chr1 175815203 175815430 -106378234 + AluY SINE Alu 84 310 -1 451 310 38 71 chr1 175815790 175816238 -106377426 - L1ME3A LINE L1 -15 6155 5723 858 266 92 30 chr1 175816256 175817094 -106376570 - L1ME3A LINE L1 -536 5628 4629 2388 96 0 6 chr1 175817094 175817406 -106376258 + AluSx SINE Alu 1 310 -2 858 266 92 30 chr1 175817406 175817946 -106375718 - L1ME3A LINE L1 -1535 4629 4124 1534 249 64 51 chr1 175818055 175818542 -106375122 - MLT1E LTR MaLR 0 593 101 475 265 98 74 chr1 175818599 175819005 -106374659 - L1ME3A LINE L1 -2237 3909 3514 2281 95 3 13 chr1 175819005 175819309 -106374355 - AluSc SINE Alu -8 301 1 475 265 98 74 chr1 175819309 175819700 -106373964 - L1ME3A LINE L1 -2632 3514 3089 2352 97 3 7 chr1 175819700 175820009 -106373655 - AluY SINE Alu -3 308 1 475 265 98 74 chr1 175820009 175820032 -106373632 - L1ME3A LINE L1 -3057 3089 3068 375 282 109 19 chr1 175820034 175820190 -106373474 - L1ME3A LINE L1 -3169 2977 2808 2309 116 0 0 chr1 175820775 175821086 -106372578 - AluSx SINE Alu -1 311 1 462 206 8 48 chr1 175821509 175821635 -106372029 + MER105 DNA DNA 28 148 -56 1315 108 6 0 chr1 175821982 175822158 -106371506 - AluSp SINE Alu -4 309 133 1828 121 0 11 chr1 175823192 175823456 -106370208 + AluSx SINE Alu 35 295 -17 578 284 76 78 chr1 175823554 175823632 -106370032 - L1ME4a LINE L1 -224 6133 6056 2239 111 0 9 chr1 175823632 175823947 -106369717 + AluSx SINE Alu 1 312 0 578 284 76 78 chr1 175823947 175825097 -106368567 - L1ME4a LINE L1 -301 6056 4908 1010 173 12 12 chr1 175825339 175825512 -106368152 - FAM SINE Alu 0 175 3 301 306 67 44 chr1 175825935 175826115 -106367549 - L1ME4a LINE L1 -3975 2409 2226 461 281 122 7 chr1 175826321 175826460 -106367204 + MIR SINE MIR 48 202 -60 1534 176 81 0 chr1 175827595 175827758 -106365906 - AluSx SINE Alu -5 307 159 270 73 0 0 chr1 175827758 175827799 -106365865 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1534 176 81 0 chr1 175827799 175827919 -106365745 - AluSx SINE Alu -153 159 1 365 215 9 37 chr1 175828247 175828354 -106365310 - Charlie7 DNA MER1_type 0 2612 2509 249 33 0 0 chr1 175828389 175828419 -106365245 + (TA)n Simple_repeat Simple_repeat 1 30 0 2504 54 0 19 chr1 175828640 175828953 -106364711 - AluY SINE Alu -4 307 1 304 268 52 10 chr1 175830011 175830108 -106363556 + MIR SINE MIR 24 124 -84 378 286 162 23 chr1 175830383 175830649 -106363015 - LTR16A LTR ERVL -15 435 133 269 230 115 62 chr1 175830957 175831070 -106362594 + MIR SINE MIR 27 145 -63 339 250 10 52 chr1 175831936 175832032 -106361632 - MIR SINE MIR -69 139 48 550 188 27 9 chr1 175832605 175832717 -106360947 - MIR SINE MIR -115 147 34 1976 131 7 3 chr1 175832747 175833083 -106360581 + AluSx SINE Alu 1 337 0 602 174 147 6 chr1 175833329 175833489 -106360175 - MER5A DNA MER1_type 0 189 4 465 214 9 0 chr1 175833528 175833640 -106360024 + MER103 DNA DNA 12 124 -42 277 277 161 9 chr1 175834506 175834618 -106359046 + MIR3 SINE MIR 12 140 -68 3341 190 38 50 chr1 175834649 175834977 -106358687 + MER21B LTR ERV1 12 343 -520 1144 126 71 15 chr1 175834977 175835175 -106358489 - L1PA13 LINE L1 0 6163 5955 3341 190 38 50 chr1 175835175 175835660 -106358004 + MER21B LTR ERV1 343 815 -48 740 264 100 4 chr1 175835913 175836152 -106357512 + MIR SINE MIR 1 262 0 239 295 90 0 chr1 175836173 175836251 -106357413 + MIR3 SINE MIR 113 197 -11 192 195 0 24 chr1 175836291 175836332 -106357332 - L2 LINE L2 -13 3259 3220 249 145 241 60 chr1 175836395 175836478 -106357186 + MIR3 SINE MIR 104 201 -7 201 74 0 0 chr1 175837476 175837503 -106356161 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 388 285 91 54 chr1 175838162 175838348 -106355316 + MIR SINE MIR 70 262 0 780 165 11 71 chr1 175838731 175838913 -106354751 + MER5B DNA MER1_type 4 174 -4 463 294 0 0 chr1 175838932 175839041 -106354623 + L2 LINE L2 3201 3309 -4 472 260 39 0 chr1 175839052 175839179 -106354485 + MIR3 SINE MIR 77 208 0 361 290 37 9 chr1 175839232 175839339 -106354325 + L2 LINE L2 3158 3267 -5 290 233 39 19 chr1 175840467 175840570 -106353094 + MLT1H LTR MaLR 14 118 -431 2169 97 66 0 chr1 175840583 175840872 -106352792 - AluSq SINE Alu -5 308 1 237 246 0 16 chr1 175840877 175840938 -106352726 + MLT1H LTR MaLR 100 159 -390 671 163 108 74 chr1 175841026 175841229 -106352435 + MLT1H LTR MaLR 340 549 0 306 73 0 0 chr1 175842148 175842189 -106351475 + (T)n Simple_repeat Simple_repeat 1 41 0 225 93 56 0 chr1 175842536 175842590 -106351074 + (TA)n Simple_repeat Simple_repeat 1 57 0 183 139 333 14 chr1 175843284 175843356 -106350308 + MIR3 SINE MIR 60 154 -54 865 282 161 15 chr1 175843701 175844185 -106349479 - L2 LINE L2 0 3313 2747 1336 226 54 17 chr1 175844266 175844615 -106349049 - MLT1A2 LTR MaLR -11 363 2 233 369 63 0 chr1 175844671 175844782 -106348882 - MIR SINE MIR -56 206 89 2511 68 3 3 chr1 175844899 175845209 -106348455 + AluY SINE Alu 1 310 -1 272 298 78 34 chr1 175846147 175846352 -106347312 + L2 LINE L2 2639 2852 -462 807 268 87 9 chr1 175846696 175846927 -106346737 - MIR SINE MIR -12 250 2 220 269 65 43 chr1 175847363 175847456 -106346208 + L2 LINE L2 2966 3060 -253 2136 112 0 57 chr1 175847537 175847868 -106345796 - AluSx SINE Alu 0 312 1 201 277 8 22 chr1 175847868 175847983 -106345681 - MIR SINE MIR -46 216 48 634 285 14 0 chr1 175848345 175848552 -106345112 + L1MC4a LINE L1 5722 5931 -1877 852 313 67 22 chr1 175849594 175849997 -106343667 + MER115 DNA AcHobo 3 423 -270 376 239 46 0 chr1 175850327 175850436 -106343228 - MER103 DNA DNA -47 119 6 877 243 78 9 chr1 175850724 175850942 -106342722 - MIR SINE MIR -5 257 25 1572 188 132 28 chr1 175850950 175851382 -106342282 - MLT1D LTR MaLR -8 497 21 492 303 20 13 chr1 175851445 175851597 -106342067 - MIR SINE MIR -62 200 48 282 29 0 0 chr1 175851855 175851890 -106341774 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1999 91 0 81 chr1 175851893 175852200 -106341464 - AluSx SINE Alu -30 282 1 361 130 0 0 chr1 175852214 175852268 -106341396 + L1MB2 LINE L1 5659 5712 -459 1559 119 13 0 chr1 175852268 175852503 -106341161 - Tigger5 DNA MER2_type 0 2323 2086 1333 157 30 25 chr1 175852494 175852730 -106340934 - Tigger5 DNA MER2_type -2085 238 2 * 427 203 0 0 chr1 175852735 175852804 -106340860 + Tigger7 DNA MER2_type 2409 2477 -14 601 178 0 62 chr1 175852808 175852916 -106340748 + L1MB2 LINE L1 6024 6122 -49 2503 92 0 0 chr1 175852916 175853219 -106340445 + AluSx SINE Alu 1 303 -9 601 178 0 62 chr1 175853219 175853256 -106340408 + L1MB2 LINE L1 6122 6160 -11 249 350 141 19 chr1 175854568 175854774 -106338890 + L3b LINE CR1 1329 1559 -24 343 285 75 38 chr1 175856154 175856340 -106337324 + L2 LINE L2 3121 3313 0 259 267 0 40 chr1 175856745 175856820 -106336844 + MER117 DNA MER1_type 96 167 -30 2275 119 0 0 chr1 175858073 175858376 -106335288 + AluSx SINE Alu 1 303 -9 188 211 96 0 chr1 175858443 175858495 -106335169 - MIR SINE MIR -63 145 89 542 301 35 20 chr1 175858635 175858834 -106334830 - MLT1L LTR MaLR 0 615 414 2467 90 0 0 chr1 175859001 175859300 -106334364 + AluSx SINE Alu 5 303 -9 250 350 141 19 chr1 175860653 175860859 -106332805 + L3b LINE CR1 1329 1559 -24 343 285 75 38 chr1 175862239 175862425 -106331239 + L2 LINE L2 3121 3313 0 259 267 0 40 chr1 175862830 175862905 -106330759 + MER117 DNA MER1_type 96 167 -30 228 351 82 40 chr1 175863793 175864195 -106329469 - L2 LINE L2 -339 2975 2557 2315 164 34 5 chr1 175865442 175865851 -106327813 + MER66B LTR ERV1 1 421 -65 221 345 88 40 chr1 175866492 175866892 -106326772 - L2 LINE L2 -339 2975 2557 573 253 63 17 chr1 175868017 175868191 -106325473 + MIR SINE MIR 8 189 -73 451 300 79 26 chr1 175868245 175868472 -106325192 + L2 LINE L2 3075 3313 0 410 216 93 23 chr1 175868573 175868713 -106324951 + MIR3 SINE MIR 44 202 -6 289 301 186 11 chr1 175869012 175869195 -106324469 - MIR SINE MIR -19 243 29 464 332 101 13 chr1 175869359 175869597 -106324067 - MIR SINE MIR -3 259 1 2337 110 3 0 chr1 175869662 175869963 -106323701 - AluSx SINE Alu -10 302 1 226 288 0 0 chr1 175870661 175870742 -106322922 + MIR SINE MIR 65 146 -62 1664 170 48 21 chr1 175871511 175871800 -106321864 + AluJb SINE Alu 3 299 -13 478 218 212 18 chr1 175872812 175873004 -106320660 - MIR SINE MIR 0 262 37 746 239 42 9 chr1 175875441 175875654 -106318010 - MIR SINE MIR -41 221 2 586 195 0 101 chr1 175876031 175876200 -106317464 + MER5B DNA MER1_type 1 152 -26 422 245 21 0 chr1 175876442 175876536 -106317128 + MIR SINE MIR 52 147 -115 824 182 35 78 chr1 175876536 175876767 -106316897 + MLT1D LTR MaLR 1 221 -284 469 283 76 20 chr1 175877112 175877310 -106316354 - MIR SINE MIR -25 237 29 250 256 240 8 chr1 175879260 175879381 -106314283 + L2 LINE L2 3165 3313 0 217 336 54 7 chr1 175879562 175879711 -106313953 - MIR3 SINE MIR -23 185 30 255 291 64 0 chr1 175880010 175880120 -106313544 + L2 LINE L2 3153 3269 -3 633 306 110 54 chr1 175880287 175880843 -106312821 + L3 LINE CR1 634 1220 -357 414 314 81 0 chr1 175881667 175881839 -106311825 + MIR SINE MIR 65 250 -12 470 121 0 201 chr1 175882039 175882213 -106311451 + L1MB3 LINE L1 6043 6181 -2 2290 31 3 3 chr1 175882999 175883290 -106310374 - L1PA5 LINE L1 0 6154 5864 303 358 44 0 chr1 175883752 175883889 -106309775 - MIR3 SINE MIR -32 176 34 198 0 0 0 chr1 175883951 175883973 -106309691 + (T)n Simple_repeat Simple_repeat 1 22 0 186 43 0 0 chr1 175885007 175885030 -106308634 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 324 257 55 28 chr1 175885034 175885143 -106308521 - L2 LINE L2 -17 3296 3185 279 292 180 0 chr1 175886299 175886388 -106307276 + L2 LINE L2 3167 3271 -1 283 221 15 29 chr1 175887182 175887250 -106306414 - L2 LINE L2 -1 3271 3205 258 405 33 16 chr1 175887401 175887643 -106306021 + L2 LINE L2 2563 2808 -506 187 322 11 46 chr1 175887723 175887810 -106305854 + L2 LINE L2 2918 3001 -271 236 226 0 16 chr1 175887814 175887876 -106305788 - MIR SINE MIR -48 214 154 1718 144 246 0 chr1 175887877 175888239 -106305425 - LTR47A LTR ERVL -1 451 1 326 309 36 29 chr1 175888239 175888378 -106305286 - MIR SINE MIR -104 158 19 264 321 61 24 chr1 175888941 175889106 -106304558 + L3 LINE CR1 1216 1386 -191 1150 226 50 41 chr1 175889198 175889517 -106304147 + MLT1A1 LTR MaLR 3 324 -41 186 347 42 0 chr1 175890671 175890743 -106302921 - MIR SINE MIR -77 185 111 300 359 26 2 chr1 175891775 175891961 -106301703 - MIR SINE MIR -50 212 20 400 331 33 2 chr1 175893157 175893346 -106300318 - L1 LINE L1 -2312 3834 3641 792 260 31 4 chr1 175893648 175893875 -106299789 + MIR SINE MIR 14 246 -16 246 219 24 89 chr1 175894526 175894649 -106299015 - MIR SINE MIR -72 136 22 234 328 0 0 chr1 175894813 175894877 -106298787 - L2 LINE L2 -18 3254 3191 2369 59 0 10 chr1 175896108 175896411 -106297253 - AluY SINE Alu -11 300 1 1840 84 4 0 chr1 175896585 175896835 -106296829 + AluY SINE Alu 61 311 0 234 336 18 0 chr1 175896849 175896962 -106296702 + L1ME LINE L1 5815 5929 -192 332 249 6 85 chr1 175897150 175897285 -106296379 - MIR SINE MIR -56 152 28 2005 121 0 0 chr1 175898271 175898593 -106295071 + AluSx SINE Alu 3 324 0 203 311 82 16 chr1 175898909 175899031 -106294633 + MIR3 SINE MIR 58 187 -21 512 337 33 0 chr1 175899272 175899453 -106294211 + MIR SINE MIR 20 206 -56 304 179 18 0 chr1 175899687 175899743 -106293921 - L2 LINE L2 -3 3269 3213 511 211 89 39 chr1 175900649 175900829 -106292835 + L2 LINE L2 3125 3313 0 376 285 233 0 chr1 175900927 175901099 -106292565 - MIR SINE MIR 0 262 51 233 206 27 55 chr1 175901812 175901885 -106291779 - L2 LINE L2 -8 3264 3194 200 273 0 0 chr1 175901958 175902002 -106291662 + L2 LINE L2 3229 3272 0 343 284 42 33 chr1 175902120 175902271 -106291393 + MER5B DNA MER1_type 34 178 0 488 243 107 41 chr1 175902358 175902527 -106291137 - L3 LINE CR1 -27 1550 1371 221 232 184 48 chr1 175902662 175902787 -106290877 - MIR3 SINE MIR -42 166 25 407 308 8 0 chr1 175904284 175904404 -106289260 - MIR3 SINE MIR -25 183 63 205 220 0 40 chr1 175905371 175905421 -106288243 - L2 LINE L2 -4 3268 3221 * 491 241 133 39 chr1 175905388 175905591 -106288073 - MIR SINE MIR -13 249 28 186 303 26 13 chr1 175905838 175905914 -106287750 + MIR SINE MIR 130 206 -56 515 225 14 78 chr1 175905963 175906105 -106287559 - MER94 DNA DNA -1 133 1 249 272 76 33 chr1 175906552 175906644 -106287020 - MIR SINE MIR -93 169 74 336 306 68 14 chr1 175907128 175907275 -106286389 - MIR3 SINE MIR -11 197 43 373 233 87 10 chr1 175907571 175907674 -106285990 + L2 LINE L2 3202 3312 -1 1615 107 24 133 chr1 175907856 175908194 -106285470 - AluYb8 SINE Alu -17 301 1 325 244 192 51 chr1 175908924 175909080 -106284584 - MIR3 SINE MIR -15 193 16 * 468 364 94 26 chr1 175909044 175909639 -106284025 + L2 LINE L2 2627 3268 -4 187 320 64 48 chr1 175909810 175909935 -106283729 + MIR SINE MIR 19 145 -63 494 284 19 43 chr1 175912007 175912061 -106281603 - MIR SINE MIR -49 213 159 867 210 17 6 chr1 175912061 175912237 -106281427 + MER5B DNA MER1_type 1 178 0 494 284 19 43 chr1 175912237 175912344 -106281320 - MIR SINE MIR -103 159 56 234 322 6 26 chr1 175912836 175912953 -106280711 + MIR3 SINE MIR 73 192 -16 583 287 110 25 chr1 175913552 175913789 -106279875 + MIR SINE MIR 2 258 -4 186 211 53 53 chr1 175913811 175913868 -106279796 + L2 LINE L2 3248 3304 -9 674 118 164 0 chr1 175914184 175914294 -106279370 - FLAM_C SINE Alu -5 128 1 225 337 89 0 chr1 175915369 175915445 -106278219 - MIR SINE MIR -67 195 106 2092 144 0 0 chr1 175915445 175915757 -106277907 + AluSx SINE Alu 1 312 0 225 337 89 0 chr1 175915757 175915781 -106277883 - MIR SINE MIR -156 106 86 721 242 59 0 chr1 175915813 175915999 -106277665 - MER117 DNA MER1_type 0 197 1 768 174 72 6 chr1 175917189 175917356 -106276308 - MER97c DNA MER1_type? -912 178 1 297 319 43 31 chr1 175918530 175918693 -106274971 - MIR SINE MIR -65 197 33 310 341 128 24 chr1 175919365 175919702 -106273962 + L2 LINE L2 2898 3269 -3 197 273 0 0 chr1 175920321 175920365 -106273299 - MIR SINE MIR -140 68 25 922 188 177 0 chr1 175920502 175920688 -106272976 - MER20 DNA MER1_type 0 219 1 205 301 199 13 chr1 175920903 175921059 -106272605 - MIR SINE MIR -31 231 47 2225 64 0 4 chr1 175921688 175921997 -106271667 - AluSg SINE Alu 0 308 1 1616 245 40 44 chr1 175922157 175922749 -106270915 + L2 LINE L2 2313 2902 -412 297 266 128 0 chr1 175922754 175922863 -106270801 + Charlie5 DNA MER1_type 1 123 -2489 1687 188 18 28 chr1 175922863 175922928 -106270736 + Charlie5 DNA MER1_type 2235 2299 -325 1321 167 33 62 chr1 175922928 175923233 -106270431 - AluJo SINE Alu -15 297 2 1687 188 18 28 chr1 175923233 175923561 -106270103 + Charlie5 DNA MER1_type 2299 2624 0 424 197 197 7 chr1 175923566 175923703 -106269961 + L2 LINE L2 2905 3067 -246 1501 212 10 3 chr1 175923703 175924009 -106269655 - AluJo SINE Alu -4 308 1 1918 153 10 0 chr1 175924046 175924353 -106269311 - AluJo SINE Alu -2 310 1 2182 109 0 0 chr1 175924382 175924675 -106268989 + AluSx SINE Alu 1 293 -19 2204 106 0 0 chr1 175924675 175924976 -106268688 + AluY SINE Alu 1 302 -9 313 230 44 35 chr1 175925221 175925334 -106268330 + L2 LINE L2 3121 3234 -79 401 165 271 0 chr1 175925349 175925434 -106268230 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3536 122 115 28 chr1 175925431 175925656 -106268008 + Tigger3(Golem) DNA MER2_type 2282 2486 -543 2037 124 0 0 chr1 175925656 175925970 -106267694 + AluSx SINE Alu 1 314 0 3536 122 115 28 chr1 175925970 175926431 -106267233 + Tigger3(Golem) DNA MER2_type 2486 3029 0 295 243 29 14 chr1 175926431 175926501 -106267163 + L2 LINE L2 3242 3312 -1 196 318 0 0 chr1 175926544 175926588 -106267076 + L2 LINE L2 3263 3306 -7 388 291 81 47 chr1 175927328 175927562 -106266102 - MIR SINE MIR -14 248 7 334 296 15 40 chr1 175927864 175928019 -106265645 - MIR SINE MIR -62 146 48 775 222 113 0 chr1 175928368 175928553 -106265111 + MIR SINE MIR 47 252 -10 200 258 167 0 chr1 175929141 175929207 -106264457 - MIR SINE MIR -165 97 21 199 328 0 0 chr1 175929282 175929340 -106264324 + L2 LINE L2 3200 3257 -15 213 326 11 22 chr1 175929364 175929456 -106264208 + MIR SINE MIR 19 109 -99 876 104 8 0 chr1 175929456 175929581 -106264083 - FLAM_C SINE Alu -9 134 9 193 231 61 102 chr1 175930173 175930320 -106263344 - MIR3 SINE MIR -60 148 8 2325 82 0 0 chr1 175931669 175931972 -106261692 - AluSx SINE Alu -9 303 1 267 294 35 0 chr1 175932556 175932641 -106261023 - MIR3 SINE MIR -52 156 69 235 333 11 21 chr1 175933621 175933714 -106259950 + MIR SINE MIR 20 111 -97 395 272 30 1 chr1 175937089 175937212 -106256452 - MIR SINE MIR -37 171 46 265 250 185 0 chr1 175937238 175937330 -106256334 + L2 LINE L2 3203 3311 -2 435 173 0 0 chr1 175939585 175939695 -106253969 + CT-rich Low_complexity Low_complexity 2 111 0 565 164 0 18 chr1 175940441 175940612 -106253052 + (CTG)n Simple_repeat Simple_repeat 2 169 0 221 340 88 14 chr1 175941392 175941539 -106252125 - MIR SINE MIR -21 241 84 282 116 0 0 chr1 175941700 175941743 -106251921 + (GAA)n Simple_repeat Simple_repeat 1 43 0 271 273 68 11 chr1 175941767 175941855 -106251809 - MIR SINE MIR -139 123 31 182 182 0 0 chr1 175942170 175942203 -106251461 - L2 LINE L2 -10 3303 3271 201 360 40 0 chr1 175942417 175942542 -106251122 + (CATG)n Simple_repeat Simple_repeat 2 131 0 1738 151 7 0 chr1 175942762 175943046 -106250618 + AluJo SINE Alu 1 286 -26 24 0 0 0 chr1 175943046 175943070 -106250594 + AT_rich Low_complexity Low_complexity 1 24 0 468 0 0 0 chr1 175943110 175943162 -106250502 + (CA)n Simple_repeat Simple_repeat 2 53 0 222 277 24 24 chr1 175943805 175943888 -106249776 + MIR SINE MIR 17 99 -163 691 226 55 0 chr1 175943907 175944053 -106249611 - MER63 DNA MER1_type -273 789 10 220 333 135 0 chr1 175944142 175944253 -106249411 + MIR3 SINE MIR 64 189 -19 459 226 75 38 chr1 175944423 175944556 -106249108 - MIR SINE MIR -79 183 46 212 378 43 43 chr1 175944653 175944841 -106248823 - L2 LINE L2 -88 3184 2997 608 334 90 35 chr1 175945018 175945440 -106248224 + L2 LINE L2 2827 3271 -1 296 218 51 0 chr1 175945514 175945592 -106248072 + MIR3 SINE MIR 122 203 -5 270 316 137 0 chr1 175945664 175945781 -106247883 + L2 LINE L2 3128 3260 -12 2207 80 35 21 chr1 175945781 175946070 -106247594 + AluSg SINE Alu 1 293 -17 698 159 7 0 chr1 175946083 175946228 -106247436 + (TGGA)n Simple_repeat Simple_repeat 3 148 0 264 242 107 109 chr1 175946495 175946699 -106246965 - MIR3 SINE MIR -46 216 3 204 295 62 31 chr1 175946699 175946801 -106246863 + L2 LINE L2 2954 3059 -213 1076 50 0 43 chr1 175946976 175947117 -106246547 - AluSq SINE Alu -48 265 131 292 243 25 80 chr1 175947727 175947884 -106245780 - MIR SINE MIR -63 145 2 503 258 16 8 chr1 175948717 175948841 -106244823 + L2 LINE L2 3185 3309 -4 1248 38 0 19 chr1 175948899 175949058 -106244606 + L1PA4 LINE L1 6000 6155 0 277 333 64 13 chr1 175949651 175949807 -106243857 - MIR3 SINE MIR -2 206 43 329 286 0 61 chr1 175951288 175951386 -106242278 + L1MC4 LINE L1 6614 6705 -1337 246 290 74 16 chr1 175951434 175951588 -106242076 - MIR SINE MIR -58 150 35 2268 119 0 0 chr1 175953334 175953637 -106240027 + AluSx SINE Alu 1 303 -9 202 211 96 0 chr1 175953704 175953756 -106239908 - MIR SINE MIR -63 145 89 536 275 140 67 chr1 175953896 175954261 -106239403 - MLT1L LTR MaLR 0 615 211 2284 103 0 7 chr1 175954261 175954562 -106239102 + AluSx SINE Alu 5 303 -9 536 275 140 67 chr1 175954562 175954632 -106239032 - MLT1L LTR MaLR -404 211 148 425 255 0 62 chr1 175955344 175955536 -106238128 + GA-rich Low_complexity Low_complexity 1 180 0 326 317 212 39 chr1 175956009 175956268 -106237396 + L2 LINE L2 2966 3269 -3 1403 92 0 0 chr1 175956473 175956646 -106237018 - AluSg/x SINE Alu -6 304 132 502 263 63 110 chr1 175956712 175957157 -106236507 - L1ME4a LINE L1 -4 6117 5694 348 252 25 42 chr1 175957341 175957460 -106236204 + L2 LINE L2 3156 3272 0 182 237 0 0 chr1 175957909 175957947 -106235717 - L2 LINE L2 -2 3270 3233 585 268 49 98 chr1 175958196 175958289 -106235375 + L2 LINE L2 2618 2714 -558 2189 129 7 0 chr1 175958289 175958591 -106235073 + AluSx SINE Alu 1 304 -8 585 268 49 98 chr1 175958591 175959044 -106234620 + L2 LINE L2 2714 3122 -150 762 330 150 14 chr1 175959290 175959863 -106233801 - L2 LINE L2 -407 2907 2257 299 262 42 62 chr1 175959942 175960055 -106233609 - L2 LINE L2 -167 3105 145 * 305 343 31 43 chr1 175960023 175960277 -106233387 - L2 LINE L2 -358 2956 2706 677 267 56 58 chr1 175960311 175960764 -106232900 + MLT1L LTR MaLR 6 524 -91 2500 81 3 0 chr1 175960764 175961074 -106232590 - AluY SINE Alu 0 311 1 677 267 56 58 chr1 175961074 175961163 -106232501 + MLT1L LTR MaLR 524 612 -3 866 139 0 16 chr1 175961200 175961329 -106232335 + FLAM_C SINE Alu 3 129 -4 892 171 0 40 chr1 175961468 175961531 -106232133 - MLT1F1 LTR MaLR 0 567 503 1731 143 0 30 chr1 175961531 175961825 -106231839 - AluJb SINE Alu 0 311 26 892 171 0 40 chr1 175961825 175961936 -106231728 - MLT1F1 LTR MaLR -64 503 399 449 203 49 0 chr1 175961942 175962065 -106231599 - L1MEc LINE L1 -5215 1181 1053 * 844 290 68 67 chr1 175962062 175962676 -106230988 + L1MEc LINE L1 1196 1810 -4586 421 176 108 49 chr1 175962678 175962780 -106230884 + L1MEc LINE L1 2060 2167 -4048 3856 235 23 4 chr1 175962788 175963844 -106229820 + L1MEc LINE L1 2671 3746 -2469 3839 171 30 133 chr1 175963827 175964253 -106229411 + L1MEc LINE L1 4056 4524 -1691 * 1076 104 0 0 chr1 175964253 175964388 -106229276 + AluSq/x SINE Alu 1 135 -178 1899 131 28 17 chr1 175964388 175964510 -106229154 + AluSx SINE Alu 1 120 -192 243 0 0 0 chr1 175964510 175964537 -106229127 + (CA)n Simple_repeat Simple_repeat 2 28 0 1899 131 28 17 chr1 175964537 175964704 -106228960 + AluSx SINE Alu 120 293 -19 3839 171 30 133 chr1 175964704 175964950 -106228714 + L1MEc LINE L1 4523 4793 -1422 1935 144 7 14 chr1 175964950 175965256 -106228408 + AluSx SINE Alu 1 304 0 3839 171 30 133 chr1 175965256 175965757 -106227907 + L1MEc LINE L1 4793 5231 -984 480 288 89 60 chr1 175966074 175966390 -106227274 + MLT1K LTR MaLR 246 570 -18 307 363 0 16 chr1 175966407 175966531 -106227133 - L2 LINE L2 -182 3090 2969 345 351 48 11 chr1 175967152 175967340 -106226324 - MIR SINE MIR -61 201 7 203 250 21 99 chr1 175968096 175968288 -106225376 + (GGCTG)n Simple_repeat Simple_repeat 1 177 0 250 271 32 159 chr1 175968571 175968592 -106225072 + L2 LINE L2 1233 1255 -2059 805 163 16 0 chr1 175968592 175968721 -106224943 + FLAM_A SINE Alu 1 131 -2 250 271 32 159 chr1 175968721 175969322 -106224342 + L2 LINE L2 1255 1776 -1538 2256 126 3 0 chr1 175969326 175969636 -106224028 - AluSx SINE Alu -1 311 1 1553 196 11 0 chr1 175969657 175969943 -106223721 + AluJb SINE Alu 1 289 -23 1846 170 0 0 chr1 175970555 175970884 -106222780 + AluJb SINE Alu 1 329 0 873 302 109 24 chr1 175970884 175971202 -106222462 + L2 LINE L2 2283 2573 -740 2191 118 3 19 chr1 175971202 175971515 -106222149 + AluSx SINE Alu 1 308 -4 873 302 109 24 chr1 175971515 175972043 -106221621 + L2 LINE L2 2573 3312 -1 2363 96 3 6 chr1 175972151 175972465 -106221199 + AluSq SINE Alu 1 313 0 2162 108 28 0 chr1 175972545 175972831 -106220833 + AluSg SINE Alu 2 295 -15 790 286 71 52 chr1 175972837 175972918 -106220746 + L1ME4a LINE L1 5456 5534 -587 2350 82 3 7 chr1 175972918 175973224 -106220440 - AluSx SINE Alu -6 306 2 790 286 71 52 chr1 175973224 175973792 -106219872 + L1ME4a LINE L1 5534 6117 -4 243 125 0 0 chr1 175974184 175974224 -106219440 + (CA)n Simple_repeat Simple_repeat 1 40 0 2883 145 57 21 chr1 175974241 175974291 -106219373 + L1MB7 LINE L1 5619 5666 -518 1995 127 3 45 chr1 175974291 175974599 -106219065 + AluSx SINE Alu 1 295 -17 2883 145 57 21 chr1 175974599 175975079 -106218585 + L1MB7 LINE L1 5666 6168 -16 788 227 18 25 chr1 175975081 175975244 -106218420 + AluJb SINE Alu 123 284 -28 198 0 0 0 chr1 175975244 175975266 -106218398 + (CA)n Simple_repeat Simple_repeat 2 23 0 1227 219 79 98 chr1 175975271 175975706 -106217958 + Zaphod DNA AcHobo 110 527 -3504 592 182 33 41 chr1 175975706 175975827 -106217837 + FLAM_A SINE Alu 1 120 -13 1227 219 79 98 chr1 175975827 175976148 -106217516 + Zaphod DNA AcHobo 527 852 -3179 1132 200 33 0 chr1 175976150 175976365 -106217299 - MLT1A1 LTR MaLR 0 365 144 1073 87 23 46 chr1 175976395 175976568 -106217096 - L1MA3 LINE L1 0 6305 6137 1234 150 44 44 chr1 175976570 175976796 -106216868 - AluJb SINE Alu 0 312 87 378 111 69 0 chr1 175976798 175976870 -106216794 - L1MA2 LINE L1 -163 6141 6065 2203 85 0 0 chr1 175976870 175977142 -106216522 - AluSx SINE Alu -8 304 33 1145 194 99 0 chr1 175977294 175977588 -106216076 + Zaphod DNA AcHobo 3595 3917 -114 324 148 0 0 chr1 175977588 175977649 -106216015 + (TA)n Simple_repeat Simple_repeat 1 61 0 759 148 0 8 chr1 175977649 175977771 -106215893 - AluSg/x SINE Alu -7 305 185 198 0 0 0 chr1 175978187 175978209 -106215455 + (TA)n Simple_repeat Simple_repeat 2 23 0 2389 102 0 3 chr1 175978209 175978514 -106215150 - AluSx SINE Alu -8 304 1 681 193 0 0 chr1 175978555 175978669 -106214995 - FLAM_A SINE Alu -16 126 13 360 165 165 0 chr1 175978669 175978748 -106214916 + MER115 DNA AcHobo 597 688 -5 288 248 178 47 chr1 175979043 175979172 -106214492 - L2 LINE L2 -4 3268 3123 2062 114 47 7 chr1 175979445 175979742 -106213922 + AluSx SINE Alu 1 309 -3 4291 77 54 2 chr1 175980286 175980861 -106212803 + LTR14B LTR ERVK 4 608 0 319 285 158 54 chr1 175981500 175981854 -106211810 - L2 LINE L2 0 3272 2882 579 84 21 42 chr1 175981857 175981952 -106211712 + FLAM_A SINE Alu 33 125 -17 2050 124 28 0 chr1 175982605 175982888 -106210776 + AluSx SINE Alu 1 291 -21 2307 106 10 0 chr1 175982888 175983190 -106210474 + AluSc SINE Alu 1 305 -4 531 248 18 9 chr1 175983190 175983303 -106210361 - MIR SINE MIR -139 123 10 180 0 0 0 chr1 175983817 175983837 -106209827 + (CACCC)n Simple_repeat Simple_repeat 4 23 0 2122 86 4 11 chr1 175984274 175984593 -106209071 - AluSc SINE Alu 0 317 1 1971 132 0 66 chr1 175984600 175984918 -106208746 - AluJo SINE Alu -15 297 1 240 35 0 0 chr1 175987353 175987382 -106206282 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 2256 119 3 0 chr1 175987453 175987763 -106205901 - AluSx SINE Alu -1 311 1 420 257 103 34 chr1 175987767 175987942 -106205722 - MLT1L LTR MaLR -121 494 308 2291 118 0 0 chr1 175987949 175988253 -106205411 + AluSq SINE Alu 1 304 -9 297 120 0 0 chr1 175988319 175988369 -106205295 + Alu SINE Alu 259 308 0 * 461 279 19 31 chr1 175988367 175988528 -106205136 - MLT1L LTR MaLR -296 319 161 1025 48 16 8 chr1 175989235 175989361 -106204303 - BC200 scRNA scRNA -69 131 5 2321 101 24 0 chr1 175989741 175990039 -106203625 - AluSx SINE Alu -7 305 1 426 203 149 27 chr1 175990246 175990394 -106203270 - MLT1L LTR MaLR -449 166 1 1257 295 58 6 chr1 175990395 175990860 -106202804 - L2 LINE L2 -299 3014 2524 230 317 45 107 chr1 175990910 175991153 -106202511 + L2 LINE L2 2938 3165 -107 220 235 20 0 chr1 175991495 175991546 -106202118 + L2 LINE L2 3221 3272 0 231 270 67 34 chr1 175991913 175992002 -106201662 + MIR SINE MIR 36 127 -81 2404 93 27 0 chr1 175992019 175992320 -106201344 + AluSx SINE Alu 1 309 -3 2065 113 10 7 chr1 175992325 175992626 -106201038 + AluSg SINE Alu 1 302 -8 653 74 21 0 chr1 175992732 175992827 -106200837 - AluSg SINE Alu -212 98 2 601 152 0 0 chr1 175992829 175992928 -106200736 - AluSg/x SINE Alu -11 299 201 1984 136 3 0 chr1 175993049 175993335 -106200329 - AluSx SINE Alu -25 287 1 303 256 12 0 chr1 175993335 175993417 -106200247 + MIR SINE MIR 121 203 -59 2178 101 0 4 chr1 175993429 175993739 -106199925 + AluSq SINE Alu 11 319 0 2300 114 0 7 chr1 175993782 175994089 -106199575 + AluSx SINE Alu 1 305 -7 200 204 0 74 chr1 175994139 175994193 -106199471 + MIR SINE MIR 203 252 -10 381 124 0 0 chr1 175994208 175994266 -106199398 + AluS SINE Alu 10 60 -240 1985 142 0 29 chr1 175994312 175994621 -106199043 + AluJb SINE Alu 10 309 -3 1243 161 57 82 chr1 175995647 175995951 -106197713 + AluJo SINE Alu 13 309 0 2365 85 0 0 chr1 175996015 175996325 -106197339 + AluSc SINE Alu 1 310 0 260 286 133 19 chr1 175996340 175996445 -106197219 - L2 LINE L2 -1 3271 3155 2401 110 3 0 chr1 175996467 175996776 -106196888 - AluSp SINE Alu -3 310 1 2249 110 7 0 chr1 175996781 175997072 -106196592 - AluSq SINE Alu -20 293 1 2271 109 0 10 chr1 175997076 175997387 -106196277 - AluSq SINE Alu -5 308 1 680 222 30 18 chr1 175997393 175997560 -106196104 - L1ME LINE L1 -566 5600 5432 2464 95 0 22 chr1 175997562 175997879 -106195785 - AluSq SINE Alu -3 310 1 762 316 31 4 chr1 175999138 175999363 -106194301 - MIR SINE MIR -12 250 20 1722 171 7 20 chr1 175999363 175999655 -106194009 + AluJo SINE Alu 1 288 -24 206 182 91 36 chr1 176002294 176002349 -106191315 - L2 LINE L2 -2 3270 3213 2467 65 10 0 chr1 176004512 176004803 -106188861 + AluSq SINE Alu 3 296 -17 2457 91 0 0 chr1 176005773 176006080 -106187584 + AluSq SINE Alu 1 307 -6 1215 138 54 17 chr1 176008392 176008632 -106185032 + L1PA15 LINE L1 5908 6156 -9 295 330 42 8 chr1 176008718 176008836 -106184828 + L3 LINE CR1 1422 1543 -34 577 148 0 0 chr1 176009573 176009661 -106184003 - FAM SINE Alu -16 169 82 2137 99 65 7 chr1 176009666 176009959 -106183705 - AluSx SINE Alu -2 310 1 524 167 0 22 chr1 176010008 176010098 -106183566 - FAM SINE Alu -95 81 1 290 294 151 0 chr1 176011404 176011523 -106182141 + L2 LINE L2 3136 3272 0 392 230 133 0 chr1 176012399 176012512 -106181152 - MIR SINE MIR -112 150 23 346 265 137 10 chr1 176012511 176012613 -106181051 + MIR SINE MIR 92 206 -56 * 581 254 44 11 chr1 176013379 176013560 -106180104 + MIR3 SINE MIR 11 197 -11 333 207 103 26 chr1 176014154 176014270 -106179394 + MIR SINE MIR 79 203 -59 762 213 36 86 chr1 176014336 176014557 -106179107 - MER63A DNA MER1_type 0 210 1 2431 136 55 0 chr1 176014735 176015139 -106178525 + MSTB LTR MaLR 1 426 0 200 351 40 0 chr1 176015282 176015356 -106178308 - L2 LINE L2 -272 3000 2924 441 254 158 34 chr1 176015462 176015671 -106177993 + MARNA DNA Mariner 288 522 -64 314 273 41 47 chr1 176015806 176016001 -106177663 + HAL1b LINE L1 339 534 -814 2391 94 3 0 chr1 176016001 176016299 -106177365 + AluSx SINE Alu 1 299 -13 314 273 41 47 chr1 176016299 176016465 -106177199 + HAL1b LINE L1 534 755 -593 1031 217 16 8 chr1 176016482 176016726 -106176938 + L1ME2 LINE L1 5918 6163 -1 * 1967 226 65 14 chr1 176016707 176016746 -106176918 - L1M4 LINE L1 -1567 4579 4543 2253 112 3 0 chr1 176016746 176017041 -106176623 + AluSx SINE Alu 1 296 -16 1967 226 65 14 chr1 176017041 176017572 -106176092 - L1M4 LINE L1 -1603 4543 3980 1608 97 17 21 chr1 176017578 176017816 -106175848 - MSTA LTR MaLR -3 425 189 512 107 0 117 chr1 176017816 176017919 -106175745 - FLAM SINE Alu -10 133 43 1156 133 20 5 chr1 176017919 176018114 -106175550 - MSTA LTR MaLR -228 198 1 2141 194 28 103 chr1 176018174 176018212 -106175452 + L1ME1 LINE L1 5400 5439 -895 2427 95 0 25 chr1 176018212 176018529 -106175135 + AluSx SINE Alu 1 309 -3 2141 194 28 103 chr1 176018529 176018704 -106174960 + L1ME1 LINE L1 5439 5626 -708 2271 109 0 10 chr1 176018704 176019015 -106174649 + AluSq SINE Alu 1 308 -5 2299 103 7 0 chr1 176019019 176019310 -106174354 + AluSq SINE Alu 1 293 -20 2203 119 3 0 chr1 176019315 176019609 -106174055 + AluSp SINE Alu 1 295 -18 2141 194 28 103 chr1 176019609 176019621 -106174043 + L1ME1 LINE L1 5633 5644 -690 1622 148 13 94 chr1 176019621 176019939 -106173725 + AluJb SINE Alu 1 292 -20 2003 147 0 3 chr1 176019943 176020236 -106173428 + AluJb SINE Alu 1 292 -20 2452 75 3 0 chr1 176020239 176020531 -106173133 + AluSp SINE Alu 1 293 -20 2141 194 28 103 chr1 176020531 176020836 -106172828 + L1ME1 LINE L1 5649 5975 -359 2078 118 28 3 chr1 176020836 176021124 -106172540 - AluSx SINE Alu -17 295 1 2141 194 28 103 chr1 176021124 176021347 -106172317 + L1ME1 LINE L1 5975 6256 -78 2223 112 7 0 chr1 176021347 176021634 -106172030 - AluSx SINE Alu -19 293 5 2141 194 28 103 chr1 176021634 176021706 -106171958 + L1ME1 LINE L1 6256 6332 -2 1944 159 3 7 chr1 176021844 176022145 -106171519 + AluJo SINE Alu 1 300 -12 1339 164 17 0 chr1 176022196 176022427 -106171237 - MER46A DNA MER2_type -1 235 1 1744 173 17 24 chr1 176022556 176022851 -106170813 + AluJo SINE Alu 1 293 -19 2331 80 35 0 chr1 176022857 176023144 -106170520 + AluSx SINE Alu 1 297 -15 322 243 149 0 chr1 176023602 176023709 -106169955 + L2 LINE L2 3150 3272 0 1903 118 66 0 chr1 176024047 176024319 -106169345 - AluSx SINE Alu -18 294 5 337 259 68 56 chr1 176024918 176025087 -106168577 + MIR3 SINE MIR 14 183 -65 1944 148 14 14 chr1 176025138 176025435 -106168229 + AluJo SINE Alu 1 297 -15 510 273 56 18 chr1 176026602 176026825 -106166839 + MIR SINE MIR 20 250 -12 236 214 18 18 chr1 176027606 176027662 -106166002 - L2 LINE L2 0 3272 3217 578 254 0 14 chr1 176027671 176027809 -106165855 - L2 LINE L2 0 3272 3137 1190 283 105 12 chr1 176027846 176028138 -106165526 + L2 LINE L2 2313 2576 -737 2041 133 19 13 chr1 176028138 176028446 -106165218 + AluSx SINE Alu 1 310 -2 1190 283 105 12 chr1 176028446 176029066 -106164598 + L2 LINE L2 2576 3311 -2 1082 276 77 43 chr1 176029072 176029459 -106164205 - L2 LINE L2 -160 3112 2693 2220 116 0 0 chr1 176029459 176029786 -106163878 + AluSq SINE Alu 1 327 0 1082 276 77 43 chr1 176029786 176029936 -106163728 - L2 LINE L2 -579 2693 2550 2154 101 0 11 chr1 176031147 176031460 -106162204 + AluSg SINE Alu 1 310 0 1854 162 7 13 chr1 176031773 176032076 -106161588 + AluJb SINE Alu 1 301 -11 188 315 41 27 chr1 176032302 176032375 -106161289 + L3 LINE CR1 1497 1570 -7 227 362 0 0 chr1 176032558 176032627 -106161037 + L2 LINE L2 3204 3272 0 300 170 7 227 chr1 176032629 176032770 -106160894 - L1MC4a LINE L1 -1841 5967 5858 22 0 0 0 chr1 176032814 176032836 -106160828 + AT_rich Low_complexity Low_complexity 1 22 0 877 112 0 0 chr1 176032842 176032958 -106160706 - AluJb SINE Alu -196 116 1 333 287 64 51 chr1 176033451 176033608 -106160056 + MIR SINE MIR 35 193 -69 1806 170 3 37 chr1 176033788 176034111 -106159553 + AluJo SINE Alu 1 312 0 2190 121 10 0 chr1 176034122 176034428 -106159236 + AluSq SINE Alu 1 309 -4 2481 83 0 0 chr1 176034459 176034760 -106158904 - AluSg SINE Alu -9 301 1 601 152 0 0 chr1 176034761 176034860 -106158804 - AluSg/x SINE Alu -11 299 201 2125 113 3 0 chr1 176034981 176035263 -106158401 - AluSx SINE Alu -25 287 5 1304 172 9 13 chr1 176035274 176035501 -106158163 - AluJo SINE Alu -1 311 86 286 319 43 0 chr1 176035505 176035599 -106158065 - MIR SINE MIR -108 154 57 782 238 65 65 chr1 176035611 176035746 -106157918 - MIR SINE MIR -4 258 121 2304 91 16 13 chr1 176035746 176036055 -106157609 + AluSx SINE Alu 1 310 -2 782 238 65 65 chr1 176036055 176036167 -106157497 - MIR SINE MIR -140 122 11 259 203 8 156 chr1 176036589 176036659 -106157005 + MIR SINE MIR 48 92 -170 1463 189 30 20 chr1 176036659 176036960 -106156704 - AluJo SINE Alu -8 304 1 259 203 8 156 chr1 176036960 176037017 -106156647 + MIR SINE MIR 92 156 -106 1612 122 4 0 chr1 176037050 176037280 -106156384 - AluJb SINE Alu -11 301 71 2027 94 21 28 chr1 176039290 176039577 -106154087 + AluSx SINE Alu 14 298 -14 253 358 45 20 chr1 176039619 176039820 -106153844 + L2 LINE L2 380 585 -2729 831 181 0 14 chr1 176039842 176039986 -106153678 - FLAM_C SINE Alu -1 142 1 448 368 31 0 chr1 176039986 176040244 -106153420 + L2 LINE L2 606 871 -2443 2190 76 0 61 chr1 176040369 176040697 -106152967 + AluY SINE Alu 1 308 -3 1797 124 6 48 chr1 176040728 176041042 -106152622 - AluJo SINE Alu -11 301 1 190 316 51 13 chr1 176041535 176041614 -106152050 + L2 LINE L2 2956 3037 -235 292 299 42 59 chr1 176041912 176042095 -106151569 - MIR SINE MIR -50 212 31 201 328 99 15 chr1 176043666 176043797 -106149867 - MIR3 SINE MIR -64 144 3 225 273 114 0 chr1 176043969 176044057 -106149607 - L3b LINE CR1 -144 1439 1342 2073 125 3 3 chr1 176044089 176044401 -106149263 - AluSx SINE Alu 0 312 1 248 246 58 0 chr1 176044423 176044492 -106149172 + L2 LINE L2 3197 3269 -3 194 191 71 0 chr1 176044729 176044771 -106148893 + L3b LINE CR1 1340 1384 -199 203 308 58 48 chr1 176045079 176045183 -106148481 - MIR3 SINE MIR -54 154 50 255 143 18 18 chr1 176048094 176048150 -106145514 - MER117 DNA MER1_type -113 84 29 352 335 206 4 chr1 176049618 176050095 -106143569 + L2 LINE L2 2032 2604 -710 1710 142 0 45 chr1 176050109 176050398 -106143266 - AluJb SINE Alu 0 312 37 255 143 18 18 chr1 176050609 176050665 -106142999 - MER117 DNA MER1_type -113 84 29 334 169 0 0 chr1 176050871 176050930 -106142734 - AluJb SINE Alu -243 59 1 2045 102 0 37 chr1 176050933 176051282 -106142382 - AluSx SINE Alu 0 338 1 999 174 0 0 chr1 176051287 176051448 -106142216 - FRAM SINE Alu -15 161 1 217 263 38 12 chr1 176051448 176051528 -106142136 + L2 LINE L2 2585 2666 -648 239 317 20 20 chr1 176051600 176051701 -106141963 + L2 LINE L2 2933 3033 -239 350 197 0 0 chr1 176051980 176052046 -106141618 + MIR SINE MIR 63 128 -134 289 274 119 25 chr1 176053598 176053777 -106139887 - MIR SINE MIR -63 145 1 238 316 60 0 chr1 176053782 176053899 -106139765 + L2 LINE L2 2252 2375 -939 238 351 27 9 chr1 176054341 176054452 -106139212 + L2 LINE L2 2923 3035 -237 247 314 43 43 chr1 176054988 176055128 -106138536 - MIR3 SINE MIR -26 182 43 513 203 297 7 chr1 176055258 176055396 -106138268 - MER5B DNA MER1_type 0 178 1 183 336 80 9 chr1 176056516 176056629 -106137035 - L3b LINE CR1 -168 1415 1295 2508 50 0 3 chr1 176060937 176061238 -106132426 + AluY SINE Alu 1 300 -11 659 202 65 0 chr1 176061247 176061415 -106132249 + FLAM_C SINE Alu 1 176 0 327 304 179 22 chr1 176061473 176061657 -106132007 + MIR SINE MIR 48 260 -2 247 152 0 28 chr1 176065187 176065397 -106128267 + AluJb SINE Alu 1 299 -3 1694 147 81 0 chr1 176065427 176065699 -106127965 - AluJo SINE Alu -18 294 1 285 276 143 0 chr1 176065830 176065928 -106127736 + MIR3 SINE MIR 78 189 -19 2272 109 0 0 chr1 176065968 176066270 -106127394 - AluSx SINE Alu -10 302 1 789 325 30 4 chr1 176067518 176067752 -106125912 - MIR SINE MIR -3 259 20 1649 171 7 20 chr1 176067752 176068044 -106125620 + AluJo SINE Alu 1 288 -24 210 287 35 81 chr1 176070683 176070770 -106122894 - L2 LINE L2 -2 3311 3229 2349 65 10 0 chr1 176072899 176073190 -106120474 + AluSq SINE Alu 3 296 -17 2337 94 0 0 chr1 176074160 176074469 -106119195 + AluSq SINE Alu 1 309 -4 1321 153 31 28 chr1 176076776 176077031 -106116633 + L1PA15 LINE L1 5908 6163 -2 295 313 62 62 chr1 176077041 176077220 -106116444 + L3 LINE CR1 1365 1543 -34 612 161 0 0 chr1 176077952 176078045 -106115619 - FAM SINE Alu -11 174 82 2030 102 64 7 chr1 176078048 176078343 -106115321 - AluSx SINE Alu 0 312 1 561 167 0 22 chr1 176078392 176078482 -106115182 - FAM SINE Alu -95 81 1 460 250 74 30 chr1 176080605 176080771 -106112893 - MER5B DNA MER1_type 0 178 7 1863 102 27 27 chr1 176080809 176080946 -106112718 + AluSx SINE Alu 1 137 -175 2245 98 14 0 chr1 176080946 176081242 -106112422 + AluSq SINE Alu 1 300 -13 1863 102 27 27 chr1 176081242 176081398 -106112266 + AluSx SINE Alu 136 294 -18 2406 63 0 3 chr1 176081452 176081754 -106111910 + AluY SINE Alu 1 301 -10 685 204 49 12 chr1 176081812 176081974 -106111690 + MER5A DNA MER1_type 21 188 -1 1927 134 10 0 chr1 176082142 176082433 -106111231 + AluJb SINE Alu 1 294 -18 286 262 184 21 chr1 176082443 176082584 -106111080 + MIR SINE MIR 9 172 -90 2193 68 10 7 chr1 176082585 176082879 -106110785 - AluY SINE Alu -16 295 1 217 129 0 0 chr1 176083264 176083295 -106110369 + (T)n Simple_repeat Simple_repeat 1 31 0 293 357 23 58 chr1 176084447 176084618 -106109046 + L2 LINE L2 3107 3271 -1 1713 125 16 91 chr1 176088996 176089316 -106104348 + AluSx SINE Alu 2 297 -15 1518 134 19 102 chr1 176089337 176089651 -106104013 + AluJo SINE Alu 6 293 -19 2347 82 0 0 chr1 176089658 176089963 -106103701 + AluY SINE Alu 1 305 -6 184 284 54 40 chr1 176091154 176091228 -106102436 + L2 LINE L2 3195 3269 -3 1746 133 32 19 chr1 176091411 176091543 -106102121 + AluJo SINE Alu 1 130 -182 2352 49 0 14 chr1 176091543 176091874 -106101790 + AluY SINE Alu 1 327 0 1746 133 32 19 chr1 176091874 176092048 -106101616 + AluJo SINE Alu 130 312 0 257 286 92 50 chr1 176092303 176092422 -106101242 + MER5A DNA MER1_type 17 140 -49 * 542 240 25 0 chr1 176092373 176092494 -106101170 + L2 LINE L2 3190 3313 0 238 278 0 28 chr1 176092493 176092565 -106101099 + MER5A DNA MER1_type 97 166 -23 * 196 229 16 33 chr1 176092513 176092574 -106101090 - MER5A DNA MER1_type -105 84 25 * 331 273 23 45 chr1 176092679 176092811 -106100853 + L2 LINE L2 3184 3312 -1 389 311 47 7 chr1 176092991 176093139 -106100525 - MIR SINE MIR -56 206 53 201 282 0 26 chr1 176093139 176093217 -106100447 + (CAGAGA)n Simple_repeat Simple_repeat 2 77 0 1371 211 81 16 chr1 176095557 176095988 -106097676 + L1MEc LINE L1 1676 2134 -4262 465 19 0 0 chr1 176097145 176097199 -106096465 + (TG)n Simple_repeat Simple_repeat 1 54 0 1902 131 6 19 chr1 176099722 176100034 -106093630 - AluSx SINE Alu -1 311 4 216 234 21 0 chr1 176100189 176100236 -106093428 - MIR SINE MIR -129 133 86 28 0 0 0 chr1 176102468 176102496 -106091168 + GC_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 176102766 176102802 -106090862 + GC_rich Low_complexity Low_complexity 1 36 0 220 230 27 75 chr1 176106196 176106383 -106087281 + (CAGAGA)n Simple_repeat Simple_repeat 3 180 0 249 136 0 0 chr1 176106393 176106437 -106087227 + L2 LINE L2 3270 3313 0 213 239 0 15 chr1 176108153 176108220 -106085444 + (CA)n Simple_repeat Simple_repeat 2 67 0 246 143 0 0 chr1 176108972 176109021 -106084643 + (CAG)n Simple_repeat Simple_repeat 1 49 0 183 139 0 0 chr1 176109024 176109060 -106084604 + (CCG)n Simple_repeat Simple_repeat 2 37 0 260 253 13 0 chr1 176110125 176110204 -106083460 + (CA)n Simple_repeat Simple_repeat 1 80 0 318 212 118 0 chr1 176111182 176111267 -106082397 - MER91A DNA MER1_type -8 188 94 353 299 121 13 chr1 176111268 176111425 -106082239 - MER91A DNA MER1_type -22 174 1 492 198 89 113 chr1 176111650 176111710 -106081954 + MER112 DNA MER1_type 10 70 -190 378 74 0 0 chr1 176111710 176111764 -106081900 + (CA)n Simple_repeat Simple_repeat 1 54 0 492 198 89 113 chr1 176111764 176111950 -106081714 + MER112 DNA MER1_type 70 250 -10 686 224 146 21 chr1 176112849 176113087 -106080577 + MIR SINE MIR 4 261 -1 2402 49 0 0 chr1 176113416 176113701 -106079963 + AluY SINE Alu 11 295 -16 430 167 44 0 chr1 176113721 176113811 -106079853 + MER5A DNA MER1_type 10 103 -86 2335 63 20 0 chr1 176115730 176116029 -106077635 + AluSp SINE Alu 1 305 -8 1359 177 43 60 chr1 176116168 176116468 -106077196 - AluJo SINE Alu -17 295 1 961 163 17 0 chr1 176116519 176116691 -106076973 - AluSg/x SINE Alu -1 309 135 2105 106 0 26 chr1 176116703 176117005 -106076659 - AluSx SINE Alu -18 294 1 2405 69 16 0 chr1 176117015 176117318 -106076346 - AluSp SINE Alu -4 309 2 342 0 0 0 chr1 176117318 176117356 -106076308 + (TG)n Simple_repeat Simple_repeat 1 38 0 1051 136 0 7 chr1 176117356 176117511 -106076153 - AluSq SINE Alu -33 280 127 1757 60 0 0 chr1 176117515 176117733 -106075931 - AluY SINE Alu -12 299 82 203 310 35 11 chr1 176117734 176117821 -106075843 - MIR SINE MIR -7 255 167 566 183 107 30 chr1 176117864 176117995 -106075669 - FLAM_C SINE Alu -2 141 1 280 98 39 0 chr1 176118005 176118056 -106075608 - Alu SINE Alu 0 302 250 1022 93 0 14 chr1 176118056 176118196 -106075468 - AluJb SINE Alu -174 138 1 392 248 3 3 chr1 176118208 176118310 -106075354 - MIR SINE MIR -72 136 35 1805 158 14 3 chr1 176118330 176118627 -106075037 - AluJb SINE Alu -12 300 1 397 374 109 0 chr1 176118735 176118946 -106074718 - L2 LINE L2 -528 2786 2553 1653 171 35 3 chr1 176118952 176119238 -106074426 + AluJb SINE Alu 1 295 -17 332 312 43 36 chr1 176120274 176120412 -106073252 - L2 LINE L2 -2 3311 3173 237 307 175 0 chr1 176120632 176120798 -106072866 - L2 LINE L2 -410 2904 2710 237 329 0 0 chr1 176121968 176122047 -106071617 - L2 LINE L2 0 3313 3235 30 27 0 0 chr1 176122074 176122111 -106071553 + AT_rich Low_complexity Low_complexity 1 37 0 358 98 44 13 chr1 176122122 176122198 -106071466 + L1MB7 LINE L1 6096 6174 0 2250 88 20 3 chr1 176122224 176122521 -106071143 + AluSx SINE Alu 1 302 -10 252 143 0 0 chr1 176122521 176122563 -106071101 + (TA)n Simple_repeat Simple_repeat 1 42 0 2021 117 10 3 chr1 176122567 176122865 -106070799 + AluSx SINE Alu 1 300 -12 374 169 270 0 chr1 176122867 176122956 -106070708 - MER3 DNA MER1_type -82 127 15 437 127 0 0 chr1 176122956 176123019 -106070645 + AluS SINE Alu 1 63 -248 859 115 31 0 chr1 176123021 176123151 -106070513 + AluJb SINE Alu 156 289 -23 2335 77 0 7 chr1 176123154 176123453 -106070211 + AluSg SINE Alu 1 297 -13 2203 76 7 0 chr1 176123456 176123745 -106069919 + AluY SINE Alu 1 291 -20 2195 104 17 0 chr1 176126496 176126795 -106066869 + AluSq SINE Alu 1 304 -9 2322 92 0 16 chr1 176126795 176127109 -106066555 + AluSx SINE Alu 1 309 -3 915 253 84 24 chr1 176127223 176127708 -106065956 - L2 LINE L2 -1 3312 2532 368 244 16 57 chr1 176127717 176127840 -106065824 - L1MC4a LINE L1 -1891 5917 5800 2151 112 0 29 chr1 176127893 176128071 -106065593 - AluSx SINE Alu -7 305 138 2353 65 3 0 chr1 176128071 176128363 -106065301 - AluY SINE Alu -18 293 1 2151 112 0 29 chr1 176128363 176128498 -106065166 - AluSx SINE Alu -174 138 1 310 319 22 37 chr1 176129076 176129211 -106064453 - MIR SINE MIR -56 152 20 303 49 0 0 chr1 176129581 176129622 -106064042 - MADE1 DNA Mariner 0 80 40 2294 83 10 0 chr1 176130020 176130322 -106063342 - AluSp SINE Alu -7 306 2 25 31 0 0 chr1 176131583 176131615 -106062049 + GC_rich Low_complexity Low_complexity 1 32 0 216 318 0 0 chr1 176132051 176132117 -106061547 + C-rich Low_complexity Low_complexity 1 66 0 180 176 0 0 chr1 176132541 176132575 -106061089 + GA-rich Low_complexity Low_complexity 1 34 0 328 269 0 39 chr1 176133716 176133881 -106059783 + G-rich Low_complexity Low_complexity 1 158 0 213 259 0 0 chr1 176134009 176134067 -106059597 + G-rich Low_complexity Low_complexity 1 58 0 221 325 12 31 chr1 176139684 176139847 -106053817 + CT-rich Low_complexity Low_complexity 3 162 0 234 136 0 0 chr1 176143597 176143641 -106050023 + (CTG)n Simple_repeat Simple_repeat 3 46 0 341 256 74 33 chr1 176144061 176144182 -106049482 - MIR3 SINE MIR -13 195 70 812 248 93 5 chr1 176144293 176144507 -106049157 - MIR SINE MIR -10 252 20 585 254 51 30 chr1 176144538 176144735 -106048929 - MIR3 SINE MIR -7 201 1 238 299 103 17 chr1 176145337 176145454 -106048210 - MIR SINE MIR -62 146 20 707 234 151 2 chr1 176145525 176145763 -106047901 + MIR SINE MIR 1 257 -5 201 264 35 49 chr1 176150117 176150239 -106043425 - MIR SINE MIR -81 127 10 248 376 91 6 chr1 176150243 176150408 -106043256 + L2 LINE L2 254 432 -2882 211 335 183 32 chr1 176150567 176151196 -106042468 + L2 LINE L2 700 1423 -1891 2238 90 13 3 chr1 176151548 176151847 -106041817 - AluSx SINE Alu -10 302 1 1836 152 3 29 chr1 176151992 176152170 -106041494 - AluJb SINE Alu -1 311 143 1977 147 0 3 chr1 176152170 176152477 -106041187 - AluSx SINE Alu -2 310 5 1836 152 3 29 chr1 176152477 176152613 -106041051 - AluJb SINE Alu -169 143 5 246 308 120 56 chr1 176152651 176152885 -106040779 + L2 LINE L2 2140 2388 -926 2269 92 0 16 chr1 176153043 176153347 -106040317 - AluSx SINE Alu -13 299 1 192 322 72 99 chr1 176153428 176153621 -106040043 + L2 LINE L2 2811 2992 -280 1499 153 58 33 chr1 176153621 176153751 -106039913 + AluJo SINE Alu 1 126 -179 218 32 32 0 chr1 176153751 176153782 -106039882 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1499 153 58 33 chr1 176153782 176153949 -106039715 + AluJo SINE Alu 126 305 0 192 322 72 99 chr1 176153949 176154127 -106039537 + L2 LINE L2 2992 3173 -99 1224 46 0 13 chr1 176155342 176155495 -106038169 + L1PA3 LINE L1 6005 6155 0 405 272 6 76 chr1 176155821 176155979 -106037685 + L2 LINE L2 2945 3091 -181 1858 130 10 3 chr1 176156047 176156339 -106037325 + AluJb SINE Alu 1 294 -18 286 262 184 21 chr1 176156349 176156490 -106037174 + MIR SINE MIR 9 172 -90 1451 66 20 5 chr1 176156491 176156689 -106036975 - AluY SINE Alu -16 295 95 982 196 96 0 chr1 176156838 176157118 -106036546 + Charlie4a DNA MER1_type 129 435 -73 345 354 118 7 chr1 176157700 176157844 -106035820 - L2 LINE L2 -1 3271 3112 202 216 0 0 chr1 176158176 176158213 -106035451 - L2 LINE L2 -18 3254 3218 511 182 0 73 chr1 176158312 176158385 -106035279 + FLAM_A SINE Alu 39 103 -208 2103 127 3 0 chr1 176158385 176158693 -106034971 - AluSx SINE Alu -3 309 1 511 182 0 73 chr1 176158693 176158729 -106034935 + FLAM_A SINE Alu 103 140 -171 924 140 0 0 chr1 176158734 176158870 -106034794 + AluJo SINE Alu 1 136 -176 1450 175 90 0 chr1 176158871 176159139 -106034525 + AluJo SINE Alu 3 294 -18 277 217 4 0 chr1 176159169 176159243 -106034421 - AluJ/monomer SINE Alu -3 299 238 301 316 48 36 chr1 176160318 176160486 -106033178 + MIR3 SINE MIR 24 193 -15 258 236 0 0 chr1 176162040 176162095 -106031569 - L2 LINE L2 -8 3264 3210 243 88 0 0 chr1 176162108 176162142 -106031522 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 927 139 0 0 chr1 176162151 176162280 -106031384 - FRAM SINE Alu -29 147 19 616 267 95 9 chr1 176162422 176162632 -106031032 - MIR SINE MIR -15 247 20 207 298 13 61 chr1 176162799 176162898 -106030766 - MIR SINE MIR -22 186 93 192 200 0 0 chr1 176164941 176164991 -106028673 + A-rich Low_complexity Low_complexity 1 50 0 280 259 82 75 chr1 176165321 176165468 -106028196 + MIR3 SINE MIR 16 163 -45 320 320 25 0 chr1 176166456 176166578 -106027086 - MIR SINE MIR -118 144 20 2242 67 0 3 chr1 176166605 176166912 -106026752 + AluY SINE Alu 1 306 0 522 239 36 14 chr1 176166925 176167063 -106026601 - MIR SINE MIR -3 259 119 223 283 0 0 chr1 176167175 176167221 -106026443 + MIR SINE MIR 69 114 -148 960 182 0 0 chr1 176167228 176167418 -106026246 - AluSg/x SINE Alu 0 315 126 339 243 149 0 chr1 176167420 176167527 -106026137 + MIR SINE MIR 123 245 -17 964 227 73 32 chr1 176168358 176168605 -106025059 + MIR SINE MIR 2 258 -4 259 203 0 38 chr1 176170854 176170933 -106022731 + (CCCCG)n Simple_repeat Simple_repeat 5 80 0 333 283 94 103 chr1 176171732 176171955 -106021709 - MIR SINE MIR -34 228 8 213 278 72 72 chr1 176172343 176172440 -106021224 - L2 LINE L2 -1 3271 3175 1309 84 0 0 chr1 176172546 176172713 -106020951 + AluSg/x SINE Alu 131 297 -15 284 255 32 43 chr1 176172720 176172814 -106020850 - MIR SINE MIR -85 177 85 595 254 107 37 chr1 176172816 176173060 -106020604 - MIR SINE MIR 0 262 2 354 255 151 14 chr1 176173074 176173217 -106020447 - MIR3 SINE MIR -35 173 9 2129 105 0 26 chr1 176173531 176173836 -106019828 + AluSx SINE Alu 1 297 -15 2156 103 0 17 chr1 176175230 176175532 -106018132 + AluSx SINE Alu 6 302 -10 327 312 116 49 chr1 176176323 176176608 -106017056 - L2 LINE L2 0 3272 2969 1794 139 30 26 chr1 176177627 176177930 -106015734 - AluJb SINE Alu -7 305 2 257 345 0 21 chr1 176179134 176179276 -106014388 + C-rich Low_complexity Low_complexity 1 139 0 301 299 28 90 chr1 176179634 176179732 -106013932 - MIR SINE MIR 0 262 182 2282 91 0 7 chr1 176179732 176180028 -106013636 + AluSq SINE Alu 1 294 -19 301 299 28 90 chr1 176180028 176180140 -106013524 - MIR SINE MIR -80 182 65 488 263 90 6 chr1 176181919 176182075 -106011589 + MIR SINE MIR 94 262 0 24 53 0 0 chr1 176182819 176182857 -106010807 + AT_rich Low_complexity Low_complexity 1 38 0 313 240 27 0 chr1 176183059 176183134 -106010530 + MER116 DNA Mariner 4 80 0 2082 95 25 0 chr1 176383925 176384209 -105809455 + AluSx SINE Alu 3 293 -19 2485 61 0 0 chr1 176384212 176384509 -105809155 + AluY SINE Alu 1 297 -14 2060 118 10 3 chr1 176384560 176384857 -105808807 + AluSx SINE Alu 6 304 -8 449 295 77 15 chr1 176386730 176386925 -105806739 - MIR SINE MIR -30 232 27 2002 125 0 7 chr1 176388920 176389215 -105804449 - AluSx SINE Alu -16 296 4 1922 123 24 3 chr1 176389386 176389678 -105803986 + AluSq SINE Alu 1 298 -15 2061 141 0 0 chr1 176390574 176390865 -105802799 + AluSx SINE Alu 1 291 -21 2185 89 0 80 chr1 176391609 176391947 -105801717 + AluSq SINE Alu 1 311 -2 183 258 56 45 chr1 176393095 176393184 -105800480 + L2 LINE L2 2569 2658 -656 231 207 17 0 chr1 176393761 176393819 -105799845 + C-rich Low_complexity Low_complexity 1 59 0 22 56 0 0 chr1 176394123 176394159 -105799505 + GC_rich Low_complexity Low_complexity 1 36 0 380 292 64 29 chr1 176394595 176394766 -105798898 + MIR3 SINE MIR 16 192 -16 21 0 0 0 chr1 176395027 176395048 -105798616 + AT_rich Low_complexity Low_complexity 1 21 0 203 325 185 19 chr1 176395200 176395357 -105798307 + MIR SINE MIR 74 256 -6 213 222 111 16 chr1 176395751 176395814 -105797850 - L2 LINE L2 -4 3268 3200 543 316 27 21 chr1 176396064 176396251 -105797413 + MIR3 SINE MIR 5 192 -16 248 234 16 16 chr1 176396486 176396550 -105797114 - MIR SINE MIR -109 153 90 240 35 0 0 chr1 176397909 176397938 -105795726 + (CTGGGG)n Simple_repeat Simple_repeat 3 31 0 1650 173 3 23 chr1 176400986 176401292 -105792372 - AluJo SINE Alu -12 300 1 186 143 29 0 chr1 176403340 176403375 -105790289 - L2 LINE L2 -2 3311 3276 181 0 33 33 chr1 176404389 176404419 -105789245 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 211 257 147 28 chr1 176405019 176405128 -105788536 + MIR SINE MIR 105 226 -36 542 280 103 0 chr1 176405170 176405345 -105788319 + MIR SINE MIR 37 229 -33 2159 105 10 0 chr1 176405510 176405814 -105787850 - AluSx SINE Alu -5 307 1 2372 62 7 0 chr1 176406045 176406337 -105787327 - AluY SINE Alu -17 294 1 706 235 8 0 chr1 176406337 176406469 -105787195 - AluJo SINE Alu -176 136 4 1734 158 35 0 chr1 176406518 176406802 -105786862 + AluSx SINE Alu 1 294 -18 385 158 18 35 chr1 176406963 176407077 -105786587 + CT-rich Low_complexity Low_complexity 1 112 0 2079 125 0 0 chr1 176407077 176407373 -105786291 - AluSx SINE Alu -16 296 1 525 241 54 18 chr1 176407459 176407625 -105786039 - MER20B DNA MER1_type -582 201 30 776 178 7 7 chr1 176407763 176407898 -105785766 + AluJo SINE Alu 1 135 -177 24 0 0 0 chr1 176407898 176407922 -105785742 + AT_rich Low_complexity Low_complexity 1 24 0 1991 107 9 47 chr1 176407943 176408261 -105785403 + AluY SINE Alu 1 306 -5 1406 166 102 11 chr1 176408645 176408910 -105784754 - AluJo SINE Alu -15 297 9 1729 185 37 0 chr1 176409021 176409319 -105784345 - AluJo SINE Alu -3 309 1 2380 75 3 0 chr1 176409534 176409839 -105783825 + AluY SINE Alu 1 306 -5 485 232 56 16 chr1 176410052 176410177 -105783487 + FLAM_A SINE Alu 1 130 -3 213 279 66 0 chr1 176410182 176410243 -105783421 + L2 LINE L2 3208 3272 0 1971 117 0 3 chr1 176410354 176410682 -105782982 - AluSx SINE Alu 0 327 1 1307 197 111 0 chr1 176410769 176411048 -105782616 + AluJb SINE Alu 1 310 -2 1689 118 47 75 chr1 176411057 176411456 -105782208 + AluSx SINE Alu 1 390 0 793 258 59 8 chr1 176411459 176411715 -105781949 - L2 LINE L2 -414 2900 2632 190 356 56 0 chr1 176411760 176411850 -105781814 + L2 LINE L2 2948 3042 -230 598 191 9 0 chr1 176411921 176412031 -105781633 - FLAM_A SINE Alu 0 142 32 203 242 8 142 chr1 176412135 176412255 -105781409 + L2 LINE L2 3169 3272 0 744 286 194 62 chr1 176413229 176413328 -105780336 - L2 LINE L2 -91 3222 3137 1889 134 0 7 chr1 176413328 176413640 -105780024 + AluSx SINE Alu 1 310 0 744 286 194 62 chr1 176413640 176414190 -105779474 - L2 LINE L2 -176 3137 2661 2023 93 24 7 chr1 176414190 176414481 -105779183 + AluSq SINE Alu 1 296 -17 744 286 194 62 chr1 176414481 176414689 -105778975 - L2 LINE L2 -652 2661 2482 2036 130 0 0 chr1 176414689 176414973 -105778691 + AluSx SINE Alu 12 295 -17 1921 120 3 13 chr1 176414978 176415287 -105778377 + AluSc SINE Alu 1 306 -3 2307 95 0 16 chr1 176415291 176415607 -105778057 + AluY SINE Alu 1 311 0 744 286 194 62 chr1 176415607 176416020 -105777644 - L2 LINE L2 -836 2477 1692 203 279 115 0 chr1 176416333 176416394 -105777270 - L2 LINE L2 -5 3267 3200 551 310 27 21 chr1 176416678 176416865 -105776799 + MIR3 SINE MIR 5 192 -16 248 234 16 16 chr1 176417097 176417161 -105776503 - MIR SINE MIR -109 153 90 240 35 0 0 chr1 176418520 176418549 -105775115 + (CTGGGG)n Simple_repeat Simple_repeat 3 31 0 998 173 30 0 chr1 176421651 176421819 -105771845 - AluJb SINE Alu -15 297 125 303 235 0 0 chr1 176421834 176421885 -105771779 - L1MC4 LINE L1 -1340 6702 6652 1842 134 7 23 chr1 176421924 176422230 -105771434 - AluSx SINE Alu -11 301 1 1983 119 33 3 chr1 176422689 176422992 -105770672 + AluSq SINE Alu 1 312 -1 2224 94 0 3 chr1 176424005 176424302 -105769362 + AluSg SINE Alu 10 305 -5 1869 151 0 43 chr1 176424308 176424633 -105769031 + AluSx SINE Alu 2 312 0 2128 130 0 0 chr1 176425241 176425541 -105768123 + AluSx SINE Alu 1 300 -12 186 143 29 0 chr1 176425561 176425596 -105768068 - L2 LINE L2 -2 3311 3276 2044 126 3 0 chr1 176427271 176427572 -105766092 - AluSx SINE Alu -2 310 9 1820 110 103 0 chr1 176427677 176427950 -105765714 - AluSx SINE Alu -11 301 1 545 268 119 0 chr1 176427955 176428149 -105765515 + MIR SINE MIR 13 229 -33 1705 182 10 0 chr1 176428523 176428820 -105764844 - AluJb SINE Alu -12 300 1 799 82 18 0 chr1 176428823 176428933 -105764731 - AluSg/x SINE Alu -4 305 194 2016 81 7 7 chr1 176429168 176429482 -105764182 + AluSg SINE Alu 1 314 0 519 92 0 0 chr1 176429837 176429924 -105763740 + (GA)n Simple_repeat Simple_repeat 1 87 0 1228 290 220 17 chr1 176430339 176430493 -105763171 - L2 LINE L2 -10 3303 3181 2082 102 6 34 chr1 176430493 176430815 -105762849 + AluSq SINE Alu 1 313 0 1228 290 220 17 chr1 176430815 176431899 -105761765 - L2 LINE L2 -132 3181 1697 2028 153 3 0 chr1 176431899 176432207 -105761457 - AluJb SINE Alu -3 309 1 1228 290 220 17 chr1 176432207 176432293 -105761371 - L2 LINE L2 -1616 1697 1630 295 286 94 35 chr1 176432293 176432464 -105761200 - MIR SINE MIR -68 194 14 2078 109 3 3 chr1 176433780 176434073 -105759591 - AluSx SINE Alu -16 296 4 2058 126 3 13 chr1 176434137 176434447 -105759217 - AluSx SINE Alu -4 308 2 1780 74 11 45 chr1 176434555 176434655 -105759009 + AluSx SINE Alu 38 140 -172 2147 49 6 86 chr1 176434655 176434981 -105758683 + AluY SINE Alu 3 302 -9 1780 74 11 45 chr1 176434981 176435149 -105758515 + AluSx SINE Alu 140 297 -15 255 274 78 73 chr1 176436304 176436441 -105757223 + MIR SINE MIR 40 188 -70 976 155 35 23 chr1 176437281 176437437 -105756227 - AluSg/x SINE Alu -16 296 143 189 0 0 0 chr1 176437437 176437458 -105756206 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2054 116 0 0 chr1 176437458 176437743 -105755921 - AluSq SINE Alu -28 285 1 976 155 35 23 chr1 176437743 176437759 -105755905 - AluSg/x SINE Alu -168 144 121 297 0 0 0 chr1 176437764 176437797 -105755867 + (TA)n Simple_repeat Simple_repeat 2 34 0 2210 105 0 16 chr1 176437797 176437975 -105755689 - AluSq SINE Alu -3 310 138 2311 90 0 7 chr1 176437975 176438285 -105755379 - AluY SINE Alu -3 308 1 2210 105 0 16 chr1 176438285 176438420 -105755244 - AluSq SINE Alu -175 138 2 1327 54 0 0 chr1 176442930 176443090 -105750574 - AluY SINE Alu -19 292 132 2417 72 0 3 chr1 176443090 176443397 -105750267 - AluY SINE Alu -5 306 1 2287 112 3 0 chr1 176443402 176443714 -105749950 - AluSp SINE Alu 0 313 1 1551 179 22 56 chr1 176444121 176444245 -105749419 - AluJo SINE Alu -4 308 181 2228 102 16 0 chr1 176444245 176444548 -105749116 - AluSq SINE Alu -5 308 1 1551 179 22 56 chr1 176444548 176444742 -105748922 - AluJo SINE Alu -131 181 1 655 329 31 0 chr1 176444796 176445024 -105748640 - MIR SINE MIR 0 262 28 2156 69 0 60 chr1 176445027 176445344 -105748320 - AluSc SINE Alu -11 298 1 208 281 389 0 chr1 176445753 176445892 -105747772 - L3 LINE CR1 -25 1552 1360 1372 206 22 42 chr1 176446001 176446312 -105747352 - AluJo SINE Alu -7 305 1 1996 135 0 0 chr1 176450374 176450695 -105742969 + AluSx SINE Alu 1 321 0 2201 91 10 0 chr1 176452187 176452484 -105741180 - AluSg SINE Alu -10 300 1 1759 109 36 60 chr1 176455198 176455500 -105738164 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr1 176455502 176455531 -105738133 + AT_rich Low_complexity Low_complexity 1 29 0 207 254 167 0 chr1 176455579 176455693 -105737971 + L2 LINE L2 2924 3056 -216 2185 99 3 0 chr1 176456342 176456636 -105737028 - AluSc SINE Alu -14 295 1 2463 71 3 0 chr1 176457120 176457429 -105736235 - AluSp SINE Alu -3 310 1 674 102 10 10 chr1 176508461 176508559 -105685105 - AluS SINE Alu -214 99 2 849 132 0 28 chr1 176508655 176508799 -105684865 - FLAM_C SINE Alu -1 142 3 518 234 33 26 chr1 176508800 176508954 -105684710 - MIR3 SINE MIR -63 145 15 2071 90 0 10 chr1 176509411 176509700 -105683964 - AluSc SINE Alu -17 292 7 2149 106 10 0 chr1 176509861 176510202 -105683462 - AluSx SINE Alu 0 312 1 1937 109 9 31 chr1 176511608 176511928 -105681736 - AluSq SINE Alu 0 313 1 1684 225 75 112 chr1 176511931 176513492 -105680172 + L2 LINE L2 1635 3135 -178 1982 120 33 0 chr1 176513502 176513801 -105679863 - AluSc SINE Alu 0 309 1 2396 48 10 3 chr1 176513801 176514094 -105679570 - AluSp SINE Alu -18 295 1 1720 146 10 17 chr1 176514094 176514111 -105679553 - AluSq SINE Alu -14 299 283 189 0 0 0 chr1 176514111 176514132 -105679532 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1720 146 10 17 chr1 176514132 176514414 -105679250 - AluSq SINE Alu -30 283 1 809 0 21 0 chr1 176514425 176514521 -105679143 + (TTTC)n Simple_repeat Simple_repeat 4 101 0 1543 183 3 23 chr1 176515962 176516268 -105677396 + AluJo SINE Alu 1 300 -12 240 35 0 0 chr1 176519322 176519351 -105674313 + (CCCCAG)n Simple_repeat Simple_repeat 3 31 0 239 234 16 16 chr1 176520712 176520776 -105672888 + MIR SINE MIR 90 153 -109 526 310 27 21 chr1 176521009 176521196 -105672468 - MIR3 SINE MIR -16 192 5 199 279 115 0 chr1 176521479 176521540 -105672124 + L2 LINE L2 3200 3267 -5 236 356 127 3 chr1 176521853 176522168 -105671496 + L2 LINE L2 1692 2045 -1269 299 272 22 11 chr1 176522387 176522479 -105671185 - MIR SINE MIR -162 100 8 1637 167 0 49 chr1 176522750 176523056 -105670608 - AluJb SINE Alu -21 291 1 262 264 36 0 chr1 176523707 176523817 -105669847 + (CA)n Simple_repeat Simple_repeat 1 114 0 1703 86 0 0 chr1 176523822 176524054 -105669610 - pTR5 LTR ERV1 -2045 393 162 491 110 33 44 chr1 176524054 176524084 -105669580 + MER51B LTR ERV1 288 317 -60 1720 113 0 0 chr1 176524084 176524324 -105669340 - AluSg SINE Alu -70 240 1 491 110 33 44 chr1 176524324 176524384 -105669280 + MER51B LTR ERV1 317 377 0 454 103 0 0 chr1 176524384 176524452 -105669212 - L1MB3 LINE L1 -250 5933 5866 2253 119 51 3 chr1 176524452 176524805 -105668859 + MER41A LTR ERV1 1 370 -184 1166 126 120 0 chr1 176524817 176525008 -105668656 + AluSq SINE Alu 12 225 -88 976 132 92 0 chr1 176525008 176525160 -105668504 - AluSx SINE Alu -131 181 16 2229 67 0 38 chr1 176525165 176525478 -105668186 - AluSg SINE Alu -9 301 1 291 262 135 57 chr1 176525504 176525645 -105668019 - MIR SINE MIR -50 212 61 192 191 362 9 chr1 176526490 176526595 -105667069 + MIR3 SINE MIR 43 184 -24 2234 108 0 0 chr1 176527425 176527722 -105665942 - AluSx SINE Alu -15 297 1 2005 84 0 7 chr1 176528168 176528441 -105665223 + AluSg SINE Alu 1 271 -39 1673 123 4 0 chr1 176528840 176529128 -105664536 + AluSx SINE Alu 39 327 0 2250 89 7 0 chr1 176529810 176530112 -105663552 + AluSp SINE Alu 1 304 -9 644 249 75 64 chr1 176530172 176530437 -105663227 + MER102b DNA MER1_type 66 333 -8 2062 107 0 30 chr1 176530939 176531238 -105662426 - AluSg SINE Alu -20 290 1 192 229 21 0 chr1 176531246 176531294 -105662370 + MER5B DNA MER1_type 6 54 -124 1515 179 34 10 chr1 176531294 176531591 -105662073 - AluJb SINE Alu -8 304 1 1795 154 10 14 chr1 176531595 176531888 -105661776 - AluJb SINE Alu -20 292 1 21 0 0 0 chr1 176531892 176531913 -105661751 + AT_rich Low_complexity Low_complexity 1 21 0 2263 90 0 22 chr1 176532375 176532510 -105661154 + AluSp SINE Alu 1 138 -175 2426 70 0 16 chr1 176532510 176532826 -105660838 + AluY SINE Alu 1 311 0 2263 90 0 22 chr1 176532826 176533001 -105660663 + AluSp SINE Alu 138 304 -9 308 148 0 0 chr1 176533013 176533067 -105660597 + Alu SINE Alu 249 302 0 2194 105 0 0 chr1 176533085 176533379 -105660285 + AluSq SINE Alu 1 294 -19 636 226 8 8 chr1 176533450 176533574 -105660090 + FLAM_A SINE Alu 1 124 -9 2077 108 0 41 chr1 176533608 176533923 -105659741 + AluSx SINE Alu 1 302 -10 255 389 48 16 chr1 176533996 176534122 -105659542 - L2 LINE L2 0 3272 3143 183 313 45 0 chr1 176534532 176534599 -105659065 - MIR SINE MIR -113 149 80 1498 187 33 47 chr1 176534666 176534966 -105658698 + AluJo SINE Alu 1 296 -16 385 257 221 0 chr1 176536139 176536279 -105657385 + MIR SINE MIR 79 249 -13 967 197 22 40 chr1 176537090 176537313 -105656351 + MER20 DNA MER1_type 1 219 0 181 288 148 44 chr1 176543101 176543330 -105650334 + L2 LINE L2 2678 2930 -384 241 103 103 35 chr1 176544348 176544406 -105649258 + MER58 DNA MER1_type 43 104 -111 * 352 156 33 56 chr1 176544396 176544458 -105649206 + MER58 DNA MER1_type 2318 2379 -41 1014 227 102 0 chr1 176544458 176544674 -105648990 + MER8 DNA MER2_type 2 239 0 352 156 33 56 chr1 176544674 176544701 -105648963 + MER58 DNA MER1_type 2379 2405 -15 1448 111 0 53 chr1 176544708 176544933 -105648731 + AluJb SINE Alu 86 298 -14 1938 113 33 43 chr1 176545551 176545718 -105647946 - AluSx SINE Alu -13 299 135 2284 99 3 3 chr1 176545718 176546010 -105647654 - AluSc SINE Alu -17 292 1 1938 113 33 43 chr1 176546010 176546144 -105647520 - AluSx SINE Alu -177 135 1 2101 125 10 0 chr1 176546209 176546498 -105647166 - AluSx SINE Alu -20 292 1 2376 100 0 0 chr1 176546505 176546805 -105646859 - AluSx SINE Alu -12 300 1 855 118 42 0 chr1 176546805 176546924 -105646740 - AluJo SINE Alu -176 136 13 332 106 0 0 chr1 176546928 176546975 -105646689 - AluJo SINE Alu -11 291 245 637 146 0 10 chr1 176546975 176547078 -105646586 - AluJo SINE Alu -125 187 86 969 282 74 28 chr1 176547080 176547537 -105646127 - L1ME3A LINE L1 -280 5890 5413 297 245 281 14 chr1 176548328 176548467 -105645197 - L2 LINE L2 -10 3303 3128 2195 92 29 20 chr1 176548483 176548789 -105644875 + AluSq SINE Alu 1 309 -4 398 292 161 16 chr1 176548820 176549063 -105644601 - L2 LINE L2 -797 2517 2240 1970 151 0 3 chr1 176550231 176550523 -105643141 + AluJb SINE Alu 3 293 -19 2390 88 0 3 chr1 176550555 176550862 -105642802 + AluY SINE Alu 1 306 -5 1614 156 36 40 chr1 176550962 176551263 -105642401 + AluJo SINE Alu 1 300 -12 315 0 0 0 chr1 176551274 176551309 -105642355 + (TA)n Simple_repeat Simple_repeat 1 35 0 2264 112 3 7 chr1 176551365 176551668 -105641996 + AluSp SINE Alu 1 302 -11 2114 84 73 3 chr1 176551859 176552145 -105641519 - AluSp SINE Alu -7 306 1 483 266 101 0 chr1 176552278 176552414 -105641250 + MIR SINE MIR 36 187 -63 * 634 209 41 29 chr1 176552411 176552583 -105641081 + MIR SINE MIR 78 251 -11 2002 84 0 4 chr1 176552688 176552939 -105640725 - AluSq SINE Alu -12 301 52 1218 101 12 0 chr1 176553079 176553248 -105640416 + AluSg/x SINE Alu 140 310 0 2032 144 3 3 chr1 176553265 176553570 -105640094 + AluJo SINE Alu 1 305 -7 1303 182 10 0 chr1 176553594 176553803 -105639861 + AluJb SINE Alu 91 301 -11 210 257 0 71 chr1 176557290 176557360 -105636304 - MIR SINE MIR -80 182 118 1566 128 44 149 chr1 176558092 176558481 -105635183 - MER7A DNA MER2_type 0 346 1 2202 117 17 0 chr1 176558658 176558957 -105634707 - AluSc SINE Alu -5 304 1 308 305 0 57 chr1 176559147 176559252 -105634412 + L1ME4a LINE L1 5964 6062 -59 984 136 48 0 chr1 176559256 176559403 -105634261 - FRAM SINE Alu -16 160 7 1556 76 11 0 chr1 176559434 176559650 -105634014 - AluSg/x SINE Alu 0 313 96 2556 61 0 0 chr1 176559655 176559951 -105633713 - AluY SINE Alu -15 296 1 430 313 86 0 chr1 176561081 176561279 -105632385 - MIR SINE MIR 0 262 48 1368 193 117 0 chr1 176561491 176561756 -105631908 - AluJb SINE Alu -16 296 1 416 248 104 7 chr1 176562996 176563167 -105630497 + MER20B DNA MER1_type 32 219 0 181 272 43 54 chr1 176563189 176563281 -105630383 - MIR SINE MIR -102 106 16 1684 89 5 5 chr1 176563437 176563651 -105630013 - AluSc SINE Alu -16 293 80 2177 127 0 13 chr1 176563651 176563958 -105629706 - AluSg SINE Alu -6 304 1 693 102 0 0 chr1 176563959 176564047 -105629617 - AluSc SINE Alu -220 89 2 1841 124 4 4 chr1 176564047 176564305 -105629359 - AluSg SINE Alu -9 301 44 1987 141 3 10 chr1 176564305 176564609 -105629055 - AluSx SINE Alu -9 303 1 209 339 0 0 chr1 176564703 176564768 -105628896 - MIR SINE MIR -109 153 89 262 221 39 13 chr1 176565578 176565592 -105628072 + GA-rich Low_complexity Low_complexity 4 16 -66 2028 147 0 25 chr1 176565592 176565911 -105627753 + AluJb SINE Alu 1 311 -1 262 221 39 13 chr1 176565911 176565973 -105627691 + GA-rich Low_complexity Low_complexity 16 82 0 2375 86 3 10 chr1 176567073 176567374 -105626290 + AluSx SINE Alu 1 299 -13 315 0 0 0 chr1 176567385 176567420 -105626244 + (CA)n Simple_repeat Simple_repeat 2 36 0 2429 87 0 16 chr1 176568183 176568358 -105625306 - AluSx SINE Alu -5 307 138 2521 60 10 3 chr1 176568358 176568659 -105625005 - AluY SINE Alu -8 303 1 2429 87 0 16 chr1 176568659 176568795 -105624869 - AluSx SINE Alu -174 138 1 2255 118 0 3 chr1 176569118 176569424 -105624240 + AluSc SINE Alu 5 309 0 2611 49 0 7 chr1 176569429 176569734 -105623930 + AluY SINE Alu 1 303 -8 1302 95 0 0 chr1 176570239 176570407 -105623257 + AluSp SINE Alu 130 297 -16 648 255 84 29 chr1 176570414 176570924 -105622740 + L1MEc LINE L1 660 1197 -5199 460 299 144 10 chr1 176571017 176571211 -105622453 + L1MEc LINE L1 1185 1404 -4811 2060 63 24 8 chr1 176571222 176571477 -105622187 + AluY SINE Alu 1 259 -52 28 0 0 0 chr1 176571482 176571510 -105622154 + AT_rich Low_complexity Low_complexity 1 28 0 943 136 7 0 chr1 176571553 176571693 -105621971 + FLAM_C SINE Alu 1 141 -2 696 135 29 0 chr1 176571831 176571935 -105621729 + U6 snRNA snRNA 1 107 0 321 296 9 9 chr1 176571954 176572069 -105621595 + L1MDa LINE L1 3 117 -6423 710 264 82 25 chr1 176572149 176572467 -105621197 + L1M4 LINE L1 4061 4396 -1750 1854 140 20 24 chr1 176572470 176572762 -105620902 + AluSx SINE Alu 1 291 -21 349 89 0 0 chr1 176572762 176572818 -105620846 + AluY SINE Alu 245 300 0 393 197 129 133 chr1 176572863 176573003 -105620661 + L1M4 LINE L1 4358 4497 -1649 2239 119 10 0 chr1 176573003 176573298 -105620366 + AluSx SINE Alu 1 298 -14 393 197 129 133 chr1 176573298 176573391 -105620273 + L1M4 LINE L1 4497 4589 -1557 1636 189 37 17 chr1 176573391 176573688 -105619976 + AluJb SINE Alu 3 305 -7 393 197 129 133 chr1 176573688 176573825 -105619839 + L1M4 LINE L1 4589 4729 -1417 2457 80 3 0 chr1 176573825 176574127 -105619537 + AluY SINE Alu 1 303 -8 393 197 129 133 chr1 176574127 176574257 -105619407 + L1M4 LINE L1 4729 4858 -1288 1419 162 9 44 chr1 176574257 176574578 -105619086 - L1MB3 LINE L1 0 6183 5874 1220 121 6 0 chr1 176574578 176574751 -105618913 - AluSg/x SINE Alu -18 294 121 559 127 0 0 chr1 176574751 176574830 -105618834 - AluSq SINE Alu -21 292 214 1004 118 0 62 chr1 176574831 176574992 -105618672 - AluSq SINE Alu -162 151 1 512 81 40 0 chr1 176574995 176575069 -105618595 - Tigger2 DNA MER2_type -1573 1145 1069 2090 120 7 7 chr1 176575071 176575371 -105618293 - AluSx SINE Alu 0 312 13 2128 121 7 3 chr1 176575382 176575680 -105617984 - AluSq SINE Alu -12 301 3 305 104 21 0 chr1 176575684 176575732 -105617932 - Tigger2 DNA MER2_type -1797 921 873 599 165 0 0 chr1 176575733 176575830 -105617834 + AluS SINE Alu 2 98 -214 230 150 0 0 chr1 176576074 176576114 -105617550 - Alu SINE Alu -6 295 256 2134 129 0 0 chr1 176576117 176576412 -105617252 + AluSx SINE Alu 17 311 -1 1527 178 118 4 chr1 176576422 176576692 -105616972 + AluJb SINE Alu 1 301 -1 737 256 111 21 chr1 176576707 176577039 -105616625 - L1MB3 LINE L1 -472 5698 5337 1653 161 63 14 chr1 176577068 176577354 -105616310 + AluSc SINE Alu 1 300 -9 987 68 0 86 chr1 176577354 176577516 -105616148 + MER41A LTR ERV1 400 547 -7 506 122 33 33 chr1 176577520 176577610 -105616054 + MER41A-int LTR ERV1 1 90 -5856 * 1195 133 30 4 chr1 176577601 176577620 -105616044 + MER41A-int LTR ERV1 4669 4686 -1260 2234 96 0 55 chr1 176577620 176577932 -105615732 - AluSq SINE Alu -17 296 2 1195 133 30 4 chr1 176577932 176578196 -105615468 + MER41A-int LTR ERV1 4686 5008 -938 * 1326 113 59 0 chr1 176578192 176578396 -105615268 + MER41A-int LTR ERV1 5729 5944 -2 2126 128 1 10 chr1 176578396 176578909 -105614755 + MER41A LTR ERV1 1 547 -88 598 245 94 62 chr1 176578928 176579080 -105614584 - L1MB3 LINE L1 -1615 4531 4385 1923 157 7 13 chr1 176579080 176579386 -105614278 - AluSx SINE Alu -8 304 1 598 245 94 62 chr1 176579386 176579400 -105614264 - L1MB3 LINE L1 -1761 4385 4373 2432 106 0 0 chr1 176579400 176579702 -105613962 - AluSg SINE Alu -8 302 1 598 245 94 62 chr1 176579702 176580403 -105613261 - L1MB3 LINE L1 -1773 4373 3696 1489 158 72 49 chr1 176580403 176580707 -105612957 - AluJo SINE Alu -1 311 1 598 245 94 62 chr1 176580707 176580856 -105612808 - L1MB3 LINE L1 -2450 3696 3553 2372 104 0 0 chr1 176580856 176581165 -105612499 - AluSg1 SINE Alu 0 309 1 598 245 94 62 chr1 176581165 176581231 -105612433 - L1MB3 LINE L1 -2593 3553 3347 * 1260 203 76 53 chr1 176581228 176581575 -105612089 + L1ME2 LINE L1 5762 6121 -43 2548 40 0 14 chr1 176581575 176581871 -105611793 + AluY SINE Alu 4 295 -16 1260 203 76 53 chr1 176581871 176581917 -105611747 + L1ME2 LINE L1 6121 6164 0 307 227 102 11 chr1 176582099 176582182 -105611482 + MIR SINE MIR 167 258 0 2202 122 3 0 chr1 176582182 176582477 -105611187 - AluSg SINE Alu -14 296 1 181 319 66 22 chr1 176583092 176583183 -105610481 - L2 LINE L2 -504 2810 2716 216 275 77 22 chr1 176583367 176583458 -105610206 + MIR SINE MIR 160 255 -7 343 305 192 11 chr1 176583622 176583799 -105609865 + MIR SINE MIR 51 259 -3 822 164 33 13 chr1 176584773 176584925 -105608739 - AluSq SINE Alu -158 155 1 29 90 0 0 chr1 176584976 176585054 -105608610 + AT_rich Low_complexity Low_complexity 1 78 0 2144 107 193 13 chr1 176585385 176585768 -105607896 - MER7C DNA MER2_type -63 539 88 1557 155 0 79 chr1 176585768 176586097 -105607567 - AluJb SINE Alu -9 303 1 1674 148 14 46 chr1 176586412 176586696 -105606968 + AluSx SINE Alu 1 275 -37 1992 101 61 0 chr1 176587131 176587408 -105606256 + AluY SINE Alu 2 295 -16 411 228 9 70 chr1 176587556 176587670 -105605994 - MIR SINE MIR -102 160 54 1977 125 0 11 chr1 176587950 176588237 -105605427 + AluSx SINE Alu 9 292 -20 2251 113 0 3 chr1 176588258 176588559 -105605105 + AluSx SINE Alu 1 300 -12 1798 138 17 21 chr1 176588567 176588858 -105604806 + AluSx SINE Alu 5 294 -18 2147 107 7 3 chr1 176588872 176589162 -105604502 + AluSx SINE Alu 3 293 -19 270 0 0 0 chr1 176589208 176589238 -105604426 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 1529 199 10 23 chr1 176589616 176589917 -105603747 - AluJo SINE Alu -15 297 1 2159 95 24 27 chr1 176589965 176590261 -105603403 + AluSq SINE Alu 1 295 -18 508 203 8 68 chr1 176590267 176590400 -105603264 + FLAM_C SINE Alu 9 133 -10 514 304 48 68 chr1 176590433 176590683 -105602981 + MIR SINE MIR 8 252 -10 1315 99 0 6 chr1 176590956 176591137 -105602527 + AluSp SINE Alu 121 300 -13 1556 182 35 3 chr1 176591146 176591432 -105602232 + AluJo SINE Alu 3 297 -15 884 187 0 19 chr1 176591455 176591610 -105602054 + AluJo SINE Alu 1 152 -160 819 187 46 156 chr1 176591743 176591813 -105601851 + L1MC/D LINE L1 4316 4392 -1754 2159 115 6 19 chr1 176591813 176592126 -105601538 + AluSc SINE Alu 1 309 0 819 187 46 156 chr1 176592126 176592262 -105601402 + L1MC/D LINE L1 4392 4541 -1605 1873 145 3 13 chr1 176592262 176592565 -105601099 + AluSx SINE Alu 1 300 -12 819 187 46 156 chr1 176592565 176592611 -105601053 + L1MC/D LINE L1 4541 4590 -1556 1952 153 3 3 chr1 176592611 176592911 -105600753 + AluSx SINE Alu 1 300 -12 819 187 46 156 chr1 176592911 176592985 -105600679 + L1MC/D LINE L1 4590 4671 -1475 2098 139 0 0 chr1 176592985 176593288 -105600376 + AluSx SINE Alu 1 303 -9 819 187 46 156 chr1 176593288 176593485 -105600179 + L1MC/D LINE L1 4671 4748 -1398 1712 173 13 0 chr1 176593485 176593785 -105599879 + AluJo SINE Alu 1 304 -8 819 187 46 156 chr1 176593785 176593807 -105599857 + L1MC/D LINE L1 4748 4771 -1375 1419 282 64 9 chr1 176593840 176594086 -105599578 + L1MC/D LINE L1 5174 5405 -1161 1717 77 0 0 chr1 176594086 176594295 -105599369 + AluSg/x SINE Alu 84 292 -20 1419 282 64 9 chr1 176594295 176594660 -105599004 + L1MC/D LINE L1 5405 5820 -746 1315 174 51 77 chr1 176594669 176595061 -105598603 + L1MB8 LINE L1 5686 6067 -111 679 231 77 0 chr1 176595230 176595386 -105598278 + MLT1E1 LTR MaLR 487 654 0 712 214 28 163 chr1 176595388 176595786 -105597878 + L1MC4 LINE L1 6685 7028 -1014 747 194 39 0 chr1 176595801 176595930 -105597734 + FLAM_C SINE Alu 2 135 -8 207 0 0 0 chr1 176595973 176595996 -105597668 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 799 276 84 34 chr1 176596016 176596082 -105597582 + L1MC4 LINE L1 7095 7156 -886 2006 125 34 3 chr1 176596082 176596377 -105597287 - AluSx SINE Alu -7 305 2 799 276 84 34 chr1 176596377 176596668 -105596996 + L1MC4 LINE L1 7156 7470 -572 851 147 0 0 chr1 176596689 176596818 -105596846 - FLAM_C SINE Alu -4 139 11 321 222 0 33 chr1 176596847 176596937 -105596727 + L1MC4 LINE L1 7480 7566 -476 1657 87 5 0 chr1 176596946 176597152 -105596512 + AluSq SINE Alu 1 207 -106 872 216 0 53 chr1 176597180 176597351 -105596313 - FRAM SINE Alu -12 164 3 1740 160 4 0 chr1 176597356 176597631 -105596033 - AluSx SINE Alu -2 310 35 457 162 0 0 chr1 176597633 176597701 -105595963 - AluJ/FLAM SINE Alu -243 69 2 516 138 0 4 chr1 176597710 176597794 -105595870 + L1MC1 LINE L1 6048 6123 -210 987 179 0 12 chr1 176597800 176597968 -105595696 - AluJo SINE Alu -146 166 1 1513 148 41 4 chr1 176597986 176598256 -105595408 + L1MC1 LINE L1 6048 6327 -6 396 111 0 0 chr1 176598609 176598681 -105594983 + (TA)n Simple_repeat Simple_repeat 2 73 0 3818 163 92 56 chr1 176598681 176599022 -105594642 + MER21A LTR ERV1 25 352 -579 2121 117 3 3 chr1 176599022 176599321 -105594343 + AluSx SINE Alu 1 299 -13 999 184 0 6 chr1 176599325 176599488 -105594176 + FRAM SINE Alu 1 162 -4 3818 163 92 56 chr1 176599488 176599954 -105593710 + MER21A LTR ERV1 354 866 -65 25 31 0 0 chr1 176599955 176599987 -105593677 + AT_rich Low_complexity Low_complexity 1 32 0 435 119 83 24 chr1 176600007 176600091 -105593573 + MER21A LTR ERV1 843 931 0 704 261 68 82 chr1 176600263 176600386 -105593278 + MLT1J LTR MaLR 90 213 -298 2277 109 0 3 chr1 176600386 176600699 -105592965 + AluSq SINE Alu 1 312 -1 704 261 68 82 chr1 176600699 176601001 -105592663 + MLT1J LTR MaLR 213 509 -2 2344 79 7 0 chr1 176601376 176601667 -105591997 - AluSp SINE Alu -16 297 5 191 308 167 0 chr1 176601817 176601895 -105591769 + L2 LINE L2 2933 3023 -249 2557 65 3 0 chr1 176602164 176602474 -105591190 + AluY SINE Alu 1 311 0 400 263 0 0 chr1 176602630 176602725 -105590939 - U13 snRNA snRNA -9 95 1 1818 126 48 0 chr1 176603188 176603478 -105590186 - AluSx SINE Alu 0 304 2 1230 277 32 11 chr1 176603758 176604133 -105589531 - ERVL LTR ERVL -1654 4110 3728 1023 324 50 17 chr1 176604258 176604737 -105588927 - ERVL LTR ERVL -2224 3540 3046 292 267 95 19 chr1 176604746 176604851 -105588813 + MER94 DNA DNA 1 113 -21 289 257 95 0 chr1 176604862 176604936 -105588728 - ERVL LTR ERVL -2720 3044 2964 1053 234 36 77 chr1 176605659 176606022 -105587642 + L1MEc LINE L1 37 384 -6012 334 141 141 0 chr1 176606218 176606289 -105587375 - L1MC4 LINE L1 -826 7216 7136 21 0 0 0 chr1 176606316 176606337 -105587327 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 176606830 176606865 -105586799 + AT_rich Low_complexity Low_complexity 1 35 0 572 269 12 6 chr1 176608671 176608831 -105584833 + AluSg/x SINE Alu 119 279 -30 194 0 0 37 chr1 176608836 176608863 -105584801 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2295 106 0 7 chr1 176608978 176609279 -105584385 - AluSx SINE Alu -13 299 1 1997 128 43 0 chr1 176609294 176609575 -105584089 - AluSx SINE Alu -19 293 1 2262 124 0 6 chr1 176609578 176609892 -105583772 - AluSx SINE Alu 0 312 1 885 162 0 36 chr1 176609892 176610059 -105583605 - FRAM SINE Alu -15 161 1 321 146 0 18 chr1 176610060 176610115 -105583549 - L1MB3 LINE L1 -45 6138 6085 2105 143 0 0 chr1 176610218 176610526 -105583138 + AluSx SINE Alu 5 312 0 1461 181 10 51 chr1 176610570 176610884 -105582780 - AluJo SINE Alu -11 301 1 1879 159 3 7 chr1 176610949 176611251 -105582413 - AluJb SINE Alu -11 301 1 25 0 0 0 chr1 176611305 176611330 -105582334 + AT_rich Low_complexity Low_complexity 1 25 0 2233 85 20 0 chr1 176611330 176611625 -105582039 + AluSx SINE Alu 1 301 -11 2053 143 7 0 chr1 176612097 176612397 -105581267 - AluJb SINE Alu -10 302 1 2190 103 0 35 chr1 176612788 176613100 -105580564 + AluSq SINE Alu 1 301 -12 1111 186 0 47 chr1 176613166 176613402 -105580262 + AluJo SINE Alu 73 297 -15 1561 106 12 134 chr1 176613815 176614144 -105579520 + AluSx SINE Alu 1 289 -13 359 195 11 35 chr1 176614284 176614371 -105579293 - MLT1F LTR MaLR 0 542 458 1922 163 3 3 chr1 176614440 176614740 -105578924 + AluJb SINE Alu 1 300 -12 2261 93 0 13 chr1 176614740 176615041 -105578623 + AluY SINE Alu 1 297 -14 1818 159 0 10 chr1 176615048 176615349 -105578315 + AluSx SINE Alu 1 298 -14 2224 103 0 7 chr1 176615349 176615675 -105577989 + AluSg SINE Alu 1 324 0 966 114 0 8 chr1 176615964 176616095 -105577569 + FLAM_C SINE Alu 4 133 0 873 134 0 49 chr1 176616311 176616453 -105577211 + FLAM_C SINE Alu 9 143 0 708 316 31 12 chr1 176616861 176617117 -105576547 + MIR SINE MIR 2 262 0 859 123 75 57 chr1 176617927 176618154 -105575510 + AluSq SINE Alu 1 231 -82 2195 69 3 56 chr1 176618345 176618664 -105575000 - AluY SINE Alu -9 302 1 209 286 0 0 chr1 176620053 176620102 -105573562 + L3 LINE CR1 1523 1571 -6 1921 120 0 8 chr1 176622104 176622371 -105571293 + AluSq SINE Alu 31 295 -18 1105 122 37 0 chr1 176622980 176623144 -105570520 - AluSg/x SINE Alu -21 289 120 945 88 16 0 chr1 176623295 176623420 -105570244 - AluSp SINE Alu -181 132 6 756 216 0 0 chr1 176623667 176623811 -105569853 + FLAM_A SINE Alu 1 144 0 2159 79 11 4 chr1 176623960 176624287 -105569377 + AluY SINE Alu 1 329 0 35 0 0 0 chr1 176626604 176626639 -105567025 + AT_rich Low_complexity Low_complexity 1 35 0 1627 155 101 57 chr1 176626821 176626850 -105566814 + L1MB4 LINE L1 5797 5823 -357 2192 111 0 29 chr1 176626850 176627156 -105566508 - AluSp SINE Alu -16 297 1 1627 155 101 57 chr1 176627156 176627181 -105566483 + L1MB4 LINE L1 5823 5845 -335 5949 131 101 51 chr1 176627181 176627489 -105566175 + Tigger3b DNA MER2_type 2 293 -2735 2207 104 13 10 chr1 176627489 176627798 -105565866 + AluSg SINE Alu 1 310 0 2134 113 3 46 chr1 176627806 176628132 -105565532 + AluSx SINE Alu 1 312 0 2007 120 14 0 chr1 176628142 176628425 -105565239 + AluSx SINE Alu 2 288 -24 2359 75 0 0 chr1 176628433 176628741 -105564923 + AluY SINE Alu 1 308 0 5949 131 101 51 chr1 176628741 176628947 -105564717 + Tigger3b DNA MER2_type 313 507 -2521 1804 168 10 0 chr1 176628947 176629239 -105564425 - AluJb SINE Alu -17 295 1 5949 131 101 51 chr1 176629239 176629862 -105563802 + Tigger3b DNA MER2_type 507 1228 -3 1627 155 101 57 chr1 176629862 176630174 -105563490 + L1MB4 LINE L1 5845 6180 0 2175 169 47 25 chr1 176630249 176630722 -105562942 - L1MDa LINE L1 -4353 2187 1705 866 183 57 29 chr1 176630735 176630910 -105562754 - AluJb SINE Alu -132 180 1 1669 231 162 90 chr1 176630915 176631378 -105562286 - L1MDa LINE L1 -4822 1718 1290 2073 132 3 10 chr1 176631378 176631689 -105561975 + AluSx SINE Alu 1 309 -3 1669 231 162 90 chr1 176631689 176631822 -105561842 - L1MDa LINE L1 -5250 1290 1168 280 152 0 22 chr1 176631822 176631868 -105561796 - Alu SINE Alu -256 46 2 1669 231 162 90 chr1 176631868 176632225 -105561439 - L1MDa LINE L1 -5372 1168 647 5913 147 34 32 chr1 176632226 176632286 -105561378 - L1P LINE L1 -761 5385 5327 2159 117 7 7 chr1 176632286 176632584 -105561080 - AluSq SINE Alu -15 298 1 5913 147 34 32 chr1 176632584 176632601 -105561063 - L1P LINE L1 -819 5327 5312 1952 129 10 29 chr1 176632601 176632910 -105560754 - AluSx SINE Alu -9 303 1 5913 147 34 32 chr1 176632910 176633200 -105560464 - L1P LINE L1 -834 5312 5024 2085 128 17 0 chr1 176633200 176633490 -105560174 - AluSx SINE Alu -17 295 1 5913 147 34 32 chr1 176633490 176634249 -105559415 - L1P LINE L1 -1122 5024 4255 297 256 35 12 chr1 176634300 176634386 -105559278 + MER65C LTR ERV1 1 88 -373 1669 165 3 53 chr1 176634502 176634824 -105558840 - AluJb SINE Alu -6 306 1 364 241 51 57 chr1 176634835 176634929 -105558735 + MER65B LTR ERV1 358 451 -80 1675 163 41 20 chr1 176634929 176635223 -105558441 - AluJo SINE Alu -10 302 3 1994 126 35 7 chr1 176635228 176635514 -105558150 - AluSx SINE Alu -18 294 1 364 241 51 57 chr1 176635514 176635571 -105558093 + MER65B LTR ERV1 455 514 -17 2192 127 0 0 chr1 176635607 176635915 -105557749 + AluSx SINE Alu 1 308 -4 464 211 18 44 chr1 176635918 176636032 -105557632 - L1MC/D LINE L1 -635 5632 5522 * 891 229 45 48 chr1 176636024 176636338 -105557326 - L1MC/D LINE L1 -1809 4271 3959 1022 277 69 12 chr1 176636355 176636763 -105556901 + L1M4 LINE L1 3280 3710 -2436 2439 66 0 13 chr1 176636861 176637162 -105556502 - AluY SINE Alu -11 300 4 2273 109 0 0 chr1 176637168 176637462 -105556202 - AluSx SINE Alu -18 294 1 1731 266 65 84 chr1 176637463 176637889 -105555775 - L1MC/D LINE L1 -5094 976 543 1821 200 0 3 chr1 176637889 176638199 -105555465 + AluJb SINE Alu 1 309 -3 1731 266 65 84 chr1 176638199 176638697 -105554967 - L1MC/D LINE L1 -5527 543 70 2045 125 14 0 chr1 176638697 176638986 -105554678 - AluSx SINE Alu 0 312 20 1731 266 65 84 chr1 176638986 176639053 -105554611 - L1MC/D LINE L1 -6000 70 3 808 181 111 7 chr1 176639059 176639203 -105554461 - FRAM SINE Alu -7 159 1 2321 99 7 0 chr1 176639766 176640068 -105553596 - AluY SINE Alu -7 304 1 828 349 77 48 chr1 176640080 176640859 -105552805 - L2 LINE L2 -1 3271 2454 1646 183 14 7 chr1 176641160 176641449 -105552215 - AluJo SINE Alu -21 291 1 823 163 7 37 chr1 176641933 176642068 -105551596 + FLAM_C SINE Alu 1 131 -2 2200 114 13 0 chr1 176642529 176642827 -105550837 - AluSq SINE Alu -11 302 1 955 101 72 0 chr1 176643003 176643172 -105550492 + AluSc SINE Alu 132 310 0 3505 146 37 29 chr1 176643178 176643305 -105550359 - Tigger2 DNA MER2_type -1836 882 758 2039 109 17 3 chr1 176643305 176643598 -105550066 - AluSg SINE Alu -13 297 1 3505 146 37 29 chr1 176643598 176643985 -105549679 - Tigger2 DNA MER2_type -1960 758 360 2265 102 3 0 chr1 176643985 176644280 -105549384 - AluSp SINE Alu -17 296 1 3505 146 37 29 chr1 176644280 176644388 -105549276 - Tigger2 DNA MER2_type -2358 360 254 1504 140 15 60 chr1 176644388 176644544 -105549120 - AluSq SINE Alu -21 292 130 2008 118 10 23 chr1 176644544 176644848 -105548816 - AluSx SINE Alu -12 300 1 2028 110 7 39 chr1 176644851 176645016 -105548648 - AluSx SINE Alu -12 300 148 2263 93 14 3 chr1 176645016 176645307 -105548357 - AluSg SINE Alu -16 294 1 2028 110 7 39 chr1 176645307 176645451 -105548213 - AluSx SINE Alu -164 148 1 2517 48 0 7 chr1 176645454 176645630 -105548034 - AluY SINE Alu -4 307 131 207 0 0 0 chr1 176645630 176645653 -105548011 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2128 103 3 21 chr1 176645653 176645943 -105547721 - AluSx SINE Alu -27 285 1 2517 48 0 7 chr1 176645943 176646074 -105547590 - AluY SINE Alu -178 133 1 1504 140 15 60 chr1 176646074 176646174 -105547490 - AluSq SINE Alu -187 126 40 659 185 110 75 chr1 176646177 176646431 -105547233 - Tigger2 DNA MER2_type -2455 263 1 273 245 158 28 chr1 176646433 176646611 -105547053 - L1 LINE L1 -1142 5004 4804 2138 119 0 29 chr1 176646706 176646881 -105546783 - AluSx SINE Alu -10 302 138 2211 88 17 3 chr1 176646881 176647177 -105546487 - AluSq SINE Alu -13 300 1 2138 119 0 29 chr1 176647177 176647312 -105546352 - AluSx SINE Alu -174 138 1 2437 165 54 2 chr1 176647314 176647721 -105545943 + MSTA LTR MaLR 1 428 0 2292 95 0 10 chr1 176647732 176648027 -105545637 + AluSq SINE Alu 3 294 -19 4064 66 2 61 chr1 176648039 176648582 -105545082 + MER9 LTR ERVK 1 511 0 228 242 55 44 chr1 176648746 176648837 -105544827 + L1ME LINE L1 5825 5916 -254 1565 174 39 3 chr1 176648839 176649121 -105544543 - AluJo SINE Alu -4 308 17 973 153 6 41 chr1 176649381 176649551 -105544113 - AluJb SINE Alu -20 292 129 1918 159 0 0 chr1 176649554 176649849 -105543815 - AluJb SINE Alu -17 295 1 240 298 156 13 chr1 176649922 176650295 -105543369 - L1 LINE L1 -2575 3571 3146 686 195 25 0 chr1 176650373 176650491 -105543173 - FLAM_A SINE Alu -9 124 4 1959 122 35 0 chr1 176650506 176650792 -105542872 + AluSx SINE Alu 1 296 -16 203 102 82 0 chr1 176650792 176650841 -105542823 + (TA)n Simple_repeat Simple_repeat 1 53 0 1438 164 6 80 chr1 176650876 176651053 -105542611 - AluJb SINE Alu -24 288 142 1639 169 10 13 chr1 176651053 176651355 -105542309 + AluJb SINE Alu 1 301 -11 1438 164 6 80 chr1 176651355 176651488 -105542176 - AluJb SINE Alu -170 142 1 197 333 0 0 chr1 176651548 176651605 -105542059 - MIR SINE MIR -194 68 12 223 300 67 25 chr1 176651944 176652064 -105541600 + L2 LINE L2 3189 3313 0 1324 151 0 23 chr1 176652312 176652531 -105541133 - AluSg/x SINE Alu -15 297 84 216 0 0 0 chr1 176654077 176654101 -105539563 + (A)n Simple_repeat Simple_repeat 1 24 0 2079 88 34 34 chr1 176654148 176654444 -105539220 + AluSg SINE Alu 5 300 -10 2042 110 0 0 chr1 176654450 176654713 -105538951 + AluSx SINE Alu 2 264 -48 198 118 0 0 chr1 176654720 176654754 -105538910 + (CAA)n Simple_repeat Simple_repeat 1 34 0 2229 123 0 0 chr1 176655342 176655650 -105538014 + AluSx SINE Alu 1 308 -4 1678 224 0 50 chr1 176655653 176655749 -105537915 - L1M4 LINE L1 -1023 5123 5024 2129 97 3 10 chr1 176655749 176656059 -105537605 - AluSp SINE Alu 0 313 7 2483 86 0 0 chr1 176656065 176656368 -105537296 - AluSg SINE Alu -7 303 1 1678 224 0 50 chr1 176656368 176656665 -105536999 - L1M4 LINE L1 -1127 5019 4743 2526 189 54 19 chr1 176656676 176657314 -105536350 + L1M3 LINE L1 5138 5796 -375 268 278 46 19 chr1 176657339 176657427 -105536237 + MIR3 SINE MIR 92 185 -23 2023 136 24 0 chr1 176657427 176657721 -105535943 - AluSx SINE Alu -11 301 1 268 278 46 19 chr1 176657721 176657740 -105535924 + MIR3 SINE MIR 185 202 -6 1384 211 40 7 chr1 176659036 176659311 -105534353 + AluJo SINE Alu 5 288 -24 1876 163 6 10 chr1 176659644 176659957 -105533707 + AluJo SINE Alu 1 312 0 297 286 217 33 chr1 176660239 176660515 -105533149 + L2 LINE L2 2092 2418 -896 457 221 148 0 chr1 176660945 176661067 -105532597 + MLT1G3 LTR MaLR 169 308 -222 240 35 0 0 chr1 176661067 176661096 -105532568 + (T)n Simple_repeat Simple_repeat 1 29 0 269 270 63 38 chr1 176661758 176661791 -105531873 - L1MA10 LINE L1 -2 6332 6300 2273 234 70 41 chr1 176661791 176662315 -105531349 - L1ME1 LINE L1 -23 6212 5654 2323 99 7 0 chr1 176662315 176662617 -105531047 - AluSx SINE Alu -8 304 1 2273 234 70 41 chr1 176662617 176662920 -105530744 - L1ME1 LINE L1 -581 5654 5361 2196 102 0 7 chr1 176662948 176663252 -105530412 - AluYa5 SINE Alu -9 302 1 970 203 51 16 chr1 176663277 176663533 -105530131 - L1ME1 LINE L1 -1034 5181 4917 2159 104 0 4 chr1 176663540 176663820 -105529844 - AluSq SINE Alu -34 279 1 26 30 0 0 chr1 176663820 176663853 -105529811 + AT_rich Low_complexity Low_complexity 1 33 0 585 167 21 0 chr1 176663866 176663962 -105529702 - AluJ/FLAM SINE Alu -213 99 2 419 281 87 0 chr1 176663963 176664148 -105529516 - L1ME1 LINE L1 -1489 4726 4526 192 40 0 0 chr1 176664193 176664218 -105529446 + (TG)n Simple_repeat Simple_repeat 1 25 0 1330 147 113 82 chr1 176664222 176664515 -105529149 - AluJb SINE Alu 0 302 1 247 312 0 0 chr1 176664517 176664610 -105529054 - L1ME1 LINE L1 -1681 4534 4442 2086 134 7 0 chr1 176664632 176664930 -105528734 - AluJb SINE Alu -12 300 1 2272 45 69 7 chr1 176664943 176665233 -105528431 - AluY SINE Alu -2 309 2 346 267 67 42 chr1 176665238 176665403 -105528261 - L1ME1 LINE L1 -1779 4436 4268 950 236 30 34 chr1 176665404 176665667 -105527997 - L1ME1 LINE L1 -2012 4203 3942 24 0 0 0 chr1 176665674 176665698 -105527966 + AT_rich Low_complexity Low_complexity 1 24 0 849 163 7 7 chr1 176665720 176665861 -105527803 - AluSq/x SINE Alu -172 141 1 3147 162 54 6 chr1 176665861 176666654 -105527010 - L1M1 LINE L1 -743 5403 4668 448 262 7 62 chr1 176666657 176666826 -105526838 - FLAM_A SINE Alu 0 142 1 2215 95 3 7 chr1 176666832 176667126 -105526538 - AluSg SINE Alu -17 293 1 1179 226 90 40 chr1 176667128 176667274 -105526390 - L1ME1 LINE L1 -3023 3192 3055 2297 89 0 7 chr1 176667274 176667565 -105526099 - AluSc SINE Alu -20 289 1 1179 226 90 40 chr1 176667565 176667839 -105525825 - L1ME1 LINE L1 -3160 3055 2751 2423 81 0 0 chr1 176667854 176668150 -105525514 - AluY SINE Alu -15 296 1 1378 247 50 62 chr1 176668151 176668855 -105524809 - L1ME1 LINE L1 -4566 1830 1136 2810 157 77 53 chr1 176668898 176669249 -105524415 + L1MB2 LINE L1 5511 5883 -288 2166 130 3 0 chr1 176669249 176669556 -105524108 + AluSp SINE Alu 3 310 -3 2810 157 77 53 chr1 176669556 176669802 -105523862 + L1MB2 LINE L1 5883 6122 -49 712 173 43 32 chr1 176669812 176669997 -105523667 + AluSx SINE Alu 4 190 -122 839 139 39 0 chr1 176670140 176670269 -105523395 + AluSq SINE Alu 78 211 -102 186 43 0 0 chr1 176670301 176670324 -105523340 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1952 134 4 0 chr1 176670327 176670603 -105523061 - AluSx SINE Alu -35 277 1 336 92 0 92 chr1 176670603 176670625 -105523039 + L1MB2 LINE L1 6113 6135 -36 2222 101 7 0 chr1 176670625 176670921 -105522743 - AluSx SINE Alu -14 298 1 336 92 0 92 chr1 176670921 176670963 -105522701 + L1MB2 LINE L1 6135 6171 0 1974 148 7 7 chr1 176671134 176671439 -105522225 - AluSx SINE Alu -7 305 1 1991 154 0 0 chr1 176671655 176671953 -105521711 + AluSx SINE Alu 1 298 -14 2180 129 3 0 chr1 176672100 176672403 -105521261 + AluSx SINE Alu 1 304 -8 2403 64 0 10 chr1 176672403 176672701 -105520963 + AluY SINE Alu 1 295 -16 240 354 26 9 chr1 176672743 176672856 -105520808 - MIR SINE MIR -64 198 84 2134 98 7 3 chr1 176673068 176673378 -105520286 + AluSx SINE Alu 1 311 0 373 337 148 15 chr1 176674981 176675387 -105518277 + L2 LINE L2 1945 2404 -910 529 303 120 20 chr1 176675420 176675720 -105517944 + MLT1I LTR MaLR 1 330 -79 837 250 75 15 chr1 176676534 176676734 -105516930 - MER58C DNA MER1_type 0 215 4 2012 126 3 7 chr1 176677079 176677364 -105516300 + AluSx SINE Alu 1 284 -28 360 0 0 0 chr1 176677364 176677404 -105516260 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr1 176677516 176677544 -105516120 + AT_rich Low_complexity Low_complexity 1 28 0 2291 102 0 0 chr1 176677847 176678142 -105515522 - AluSx SINE Alu -17 295 1 2367 89 0 0 chr1 176678974 176679266 -105514398 + AluSg SINE Alu 1 292 -18 2200 98 20 3 chr1 176680449 176680746 -105512918 - AluSx SINE Alu -10 302 1 243 307 9 97 chr1 176680785 176680899 -105512765 - L2 LINE L2 -12 3260 3157 242 259 0 17 chr1 176682189 176682247 -105511417 + MIR SINE MIR 17 73 -189 21 57 0 0 chr1 176682358 176682393 -105511271 + AT_rich Low_complexity Low_complexity 1 35 0 1611 179 7 7 chr1 176682448 176682722 -105510942 + AluJb SINE Alu 4 277 -35 186 43 0 0 chr1 176682727 176682750 -105510914 + (TAA)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr1 176684225 176684248 -105509416 + (A)n Simple_repeat Simple_repeat 1 23 0 2395 70 0 0 chr1 176685008 176685321 -105508343 + AluY SINE Alu 1 313 0 1569 117 24 16 chr1 176685502 176685751 -105507913 - L1MA4A LINE L1 -6 6297 6047 2430 169 151 45 chr1 176686783 176687312 -105506352 - L1MD3 LINE L1 -3 7992 7521 353 240 67 0 chr1 176687312 176687387 -105506277 - MLT1F1 LTR MaLR -443 124 45 2430 169 151 45 chr1 176687387 176687588 -105506076 - L1MD3 LINE L1 -474 7521 6904 2215 100 7 0 chr1 176688125 176688414 -105505250 - AluSp SINE Alu -18 295 5 2364 97 7 0 chr1 176689111 176689421 -105504243 + AluSx SINE Alu 1 312 0 2144 112 0 0 chr1 176689487 176689764 -105503900 - AluSx SINE Alu -13 299 23 1946 124 0 3 chr1 176740018 176740328 -105453336 + AluSx SINE Alu 1 309 0 2269 82 7 0 chr1 176740504 176740795 -105452869 + AluSc SINE Alu 1 293 -16 240 111 0 0 chr1 176740827 176740863 -105452801 + (T)n Simple_repeat Simple_repeat 1 36 0 224 159 0 0 chr1 176740963 176741007 -105452657 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 890 197 62 58 chr1 176741007 176741266 -105452398 + AluJb SINE Alu 2 261 -51 1873 102 65 3 chr1 176741374 176741668 -105451996 + AluSp SINE Alu 1 312 -1 1390 165 117 19 chr1 176741687 176741996 -105451668 - MER44D DNA MER2_type 0 609 1 287 311 121 8 chr1 176742084 176742216 -105451448 + MLT1L LTR MaLR 120 266 -349 628 280 30 10 chr1 176742344 176742544 -105451120 + MLT1L LTR MaLR 410 613 -2 741 142 26 0 chr1 176742817 176742930 -105450734 + FLAM_C SINE Alu 3 118 -15 188 83 0 28 chr1 176742937 176742973 -105450691 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1601 178 14 0 chr1 176743036 176743328 -105450336 - AluJo SINE Alu -14 298 3 2112 103 0 10 chr1 176743334 176743634 -105450030 - AluSc SINE Alu -12 297 1 2316 90 3 0 chr1 176743897 176744208 -105449456 - AluSp SINE Alu -1 312 1 290 244 175 38 chr1 176744212 176744372 -105449292 + L2 LINE L2 3113 3294 -19 842 147 62 14 chr1 176744372 176744533 -105449131 + L1PA16 LINE L1 5835 6003 -163 1851 71 59 4 chr1 176744551 176744806 -105448858 + AluSp SINE Alu 35 303 -10 1100 115 0 24 chr1 176744806 176744971 -105448693 + AluSg/x SINE Alu 132 292 -18 255 172 0 62 chr1 176744971 176745035 -105448629 + AluJo SINE Alu 83 142 -160 2182 109 0 3 chr1 176745036 176745339 -105448325 + AluSx SINE Alu 1 302 -10 756 232 46 0 chr1 176745342 176745493 -105448171 + AluJo SINE Alu 137 294 -8 729 142 0 30 chr1 176745499 176745633 -105448031 + L1PA16 LINE L1 6035 6164 -2 2276 110 0 0 chr1 176745637 176745947 -105447717 + AluSg SINE Alu 1 310 0 499 241 82 60 chr1 176746021 176746057 -105447607 - MLT1K LTR MaLR -37 551 517 2388 81 0 0 chr1 176746057 176746365 -105447299 + AluY SINE Alu 1 308 -3 499 241 82 60 chr1 176746365 176746560 -105447104 - MLT1K LTR MaLR -71 517 315 1819 114 62 3 chr1 176746605 176746895 -105446769 + AluSx SINE Alu 1 307 -5 252 248 62 71 chr1 176747079 176747192 -105446472 + MER5A DNA MER1_type 65 187 -2 * 403 211 21 21 chr1 176747111 176747206 -105446458 - MER5A DNA MER1_type -92 97 3 198 0 0 0 chr1 176748930 176748952 -105444712 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1858 144 3 3 chr1 176748952 176749237 -105444427 - AluJb SINE Alu -27 285 1 193 219 0 0 chr1 176749306 176749338 -105444326 + MIR SINE MIR 34 65 -143 2139 105 3 3 chr1 176750460 176750766 -105442898 + AluSq SINE Alu 1 306 -7 1050 231 33 16 chr1 176752219 176752282 -105441382 + MIR SINE MIR 6 66 -196 1753 164 7 0 chr1 176752282 176752575 -105441089 - AluJo SINE Alu -15 297 3 1050 231 33 16 chr1 176752575 176752753 -105440911 + MIR SINE MIR 66 251 -11 360 284 0 0 chr1 176752804 176752885 -105440779 + MIR SINE MIR 34 114 -94 2305 82 0 0 chr1 176753062 176753354 -105440310 - AluSq SINE Alu -21 292 1 213 119 0 0 chr1 176753569 176753611 -105440053 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 2291 57 0 13 chr1 176753611 176753905 -105439759 - AluY SINE Alu -21 290 1 1725 170 0 0 chr1 176754239 176754528 -105439136 - AluJb SINE Alu -23 289 1 24 0 0 0 chr1 176754538 176754562 -105439102 + AT_rich Low_complexity Low_complexity 1 24 0 2290 60 0 10 chr1 176754633 176754935 -105438729 + AluY SINE Alu 1 299 -12 779 148 113 7 chr1 176754935 176755077 -105438587 + AluJb SINE Alu 134 290 -22 2036 99 0 20 chr1 176755085 176755221 -105438443 + AluSx SINE Alu 1 138 -174 2337 83 0 6 chr1 176755221 176755534 -105438130 + AluY SINE Alu 1 311 0 2036 99 0 20 chr1 176755534 176755691 -105437973 + AluSx SINE Alu 138 288 -24 2521 42 0 3 chr1 176755943 176756253 -105437411 + AluY SINE Alu 1 309 -2 269 252 81 81 chr1 176756437 176756548 -105437116 - L2 LINE L2 -13 3259 3149 2030 103 17 3 chr1 176756787 176757079 -105436585 + AluSx SINE Alu 1 296 -16 753 99 124 25 chr1 176757849 176757970 -105435694 + FLAM_C SINE Alu 1 133 0 24 53 0 0 chr1 176757970 176758008 -105435656 + AT_rich Low_complexity Low_complexity 1 38 0 180 277 264 57 chr1 176760130 176760289 -105433375 + L3 LINE CR1 1385 1576 -1 2060 107 14 0 chr1 176760300 176760589 -105433075 - AluSp SINE Alu -20 293 1 1682 180 0 33 chr1 176760692 176760834 -105432830 + AluJb SINE Alu 1 146 -166 1932 110 13 45 chr1 176760834 176761143 -105432521 + AluSx SINE Alu 1 299 -13 1682 180 0 33 chr1 176761143 176761305 -105432359 + AluJb SINE Alu 146 295 -17 908 73 0 32 chr1 176761308 176761432 -105432232 + AluSq SINE Alu 5 124 -189 1239 118 0 0 chr1 176761856 176762034 -105431630 + AluSq SINE Alu 129 306 -7 2071 111 3 19 chr1 176762035 176762351 -105431313 + AluSx SINE Alu 2 312 0 2330 76 0 16 chr1 176762355 176762490 -105431174 + AluSg SINE Alu 1 137 -173 2292 56 7 0 chr1 176762490 176762778 -105430886 + AluY SINE Alu 1 290 -21 2330 76 0 16 chr1 176762778 176762957 -105430707 + AluSg SINE Alu 137 310 0 335 227 155 0 chr1 176763035 176763132 -105430532 - L1ME LINE L1 -330 5791 5680 1381 167 0 4 chr1 176763201 176763435 -105430229 + AluJb SINE Alu 1 233 -79 496 156 10 21 chr1 176763444 176763540 -105430124 - AluSc SINE Alu -82 227 133 655 194 73 0 chr1 176763544 176763668 -105429996 - FLAM_C SINE Alu 0 133 1 722 168 0 84 chr1 176764562 176764674 -105428990 + FLAM_A SINE Alu 2 101 -201 1741 167 7 10 chr1 176764674 176764973 -105428691 - AluJb SINE Alu -14 298 1 722 168 0 84 chr1 176764973 176765003 -105428661 + FLAM_A SINE Alu 101 132 -170 503 306 65 16 chr1 176765012 176765260 -105428404 - MIR SINE MIR 0 262 3 1760 139 0 23 chr1 176765305 176765607 -105428057 - AluSx SINE Alu -15 297 3 265 278 87 16 chr1 176765676 176765802 -105427862 - L1ME4a LINE L1 -23 6098 5964 265 172 103 78 chr1 176765845 176765961 -105427703 - MER112 DNA MER1_type -1 259 141 2301 96 3 6 chr1 176765961 176766275 -105427389 + AluSq SINE Alu 1 313 0 1599 160 0 14 chr1 176766309 176766614 -105427050 + AluJo SINE Alu 6 306 0 1808 108 29 79 chr1 176766723 176767038 -105426626 - AluSx SINE Alu -13 299 1 349 235 59 76 chr1 176767113 176767232 -105426432 + L2 LINE L2 3189 3305 -8 2297 66 7 7 chr1 176767291 176767595 -105426069 + AluY SINE Alu 1 304 -7 2317 80 0 0 chr1 176767656 176767956 -105425708 + AluY SINE Alu 1 300 -11 2353 57 0 3 chr1 176768045 176768344 -105425320 - AluY SINE Alu -13 298 1 1759 156 17 0 chr1 176768347 176768635 -105425029 - AluJb SINE Alu -19 293 1 1355 193 95 0 chr1 176768649 176768934 -105424730 - AluSx SINE Alu 0 312 1 1112 150 83 0 chr1 176769117 176769310 -105424354 - MER3 DNA MER1_type 0 209 1 2332 72 0 0 chr1 176769516 176769807 -105423857 - AluSc SINE Alu -18 291 1 583 191 55 136 chr1 176770715 176770914 -105422750 - AluJo SINE Alu -45 267 85 497 277 71 33 chr1 176772587 176772771 -105420893 - MIR SINE MIR -68 194 4 587 318 69 0 chr1 176772919 176773092 -105420572 - MIR SINE MIR -64 198 14 2162 117 0 3 chr1 176773381 176773689 -105419975 + AluSq SINE Alu 1 307 -6 2186 105 0 3 chr1 176775594 176775888 -105417776 + AluSx SINE Alu 1 293 -19 304 196 0 0 chr1 176775948 176775999 -105417665 + L1MC4 LINE L1 6653 6703 -1339 317 203 0 17 chr1 176776011 176776070 -105417594 + L1MC4 LINE L1 6652 6709 -1333 626 193 65 201 chr1 176776168 176776521 -105417143 + L2 LINE L2 3009 3313 0 2199 111 0 13 chr1 176776536 176776852 -105416812 + AluSx SINE Alu 1 312 0 1209 139 43 19 chr1 176777057 176777266 -105416398 + AluJo SINE Alu 87 300 -12 2306 87 3 0 chr1 176777306 176777606 -105416058 - AluSp SINE Alu -12 301 1 577 307 194 7 chr1 176777606 176777889 -105415775 + L2 LINE L2 2960 3295 -18 240 280 16 80 chr1 176777880 176777941 -105415723 + L3 LINE CR1 730 781 -796 * 2250 99 0 0 chr1 176777941 176778243 -105415421 + AluSx SINE Alu 1 302 -10 240 280 16 80 chr1 176778243 176778306 -105415358 + L3 LINE CR1 781 846 -731 219 304 61 52 chr1 176778497 176778612 -105415052 + L3 LINE CR1 967 1082 -495 991 185 0 0 chr1 176778685 176778847 -105414817 - AluJo/FRAM SINE Alu -4 298 137 1456 217 13 30 chr1 176778850 176779020 -105414644 - AluJb SINE Alu -3 299 135 2101 109 10 0 chr1 176779020 176779313 -105414351 - AluSx SINE Alu -16 296 1 1456 217 13 30 chr1 176779313 176779446 -105414218 - AluJb SINE Alu -167 135 1 1410 188 34 24 chr1 176779478 176779776 -105413888 - AluJo SINE Alu -9 303 3 370 241 63 82 chr1 176780968 176781034 -105412630 + MIR SINE MIR 3 69 -193 2230 99 3 0 chr1 176781034 176781337 -105412327 + AluSp SINE Alu 1 304 -9 370 241 63 82 chr1 176781337 176781477 -105412187 + MIR SINE MIR 69 205 -57 250 222 0 78 chr1 176783911 176783957 -105409707 + L1MB7 LINE L1 6071 6108 -76 2076 86 45 3 chr1 176783957 176784248 -105409416 + AluSx SINE Alu 1 303 -9 250 222 0 78 chr1 176784248 176784291 -105409373 + L1MB7 LINE L1 6108 6153 -31 197 284 0 108 chr1 176784764 176784838 -105408826 - L2 LINE L2 0 3272 3207 2146 82 10 0 chr1 176785212 176785504 -105408160 - AluSx SINE Alu -17 295 1 226 48 95 0 chr1 176786150 176786192 -105407472 + CT-rich Low_complexity Low_complexity 1 46 0 1729 149 0 34 chr1 176786416 176786739 -105406925 + AluJo SINE Alu 1 312 0 338 298 199 65 chr1 176786757 176786944 -105406720 - L3 LINE CR1 -5 1572 1339 2315 98 7 3 chr1 176786944 176787251 -105406413 - AluSg SINE Alu -2 308 1 338 298 199 65 chr1 176787251 176787325 -105406339 - L3 LINE CR1 -238 1339 1276 902 154 0 0 chr1 176787452 176787588 -105406076 + FRAM SINE Alu 22 157 -19 396 302 36 47 chr1 176787752 176787900 -105405764 - L3 LINE CR1 -446 1131 984 2268 87 7 13 chr1 176787900 176788200 -105405464 - AluSp SINE Alu -15 298 1 396 302 36 47 chr1 176788200 176788243 -105405421 - L3 LINE CR1 -593 984 942 498 251 126 0 chr1 176788289 176788464 -105405200 - MIR SINE MIR -59 203 7 2326 84 0 13 chr1 176788498 176788807 -105404857 + AluY SINE Alu 2 306 -5 370 234 57 82 chr1 176788830 176788988 -105404676 - MIR SINE MIR -64 198 45 2165 119 7 0 chr1 176789827 176790121 -105403543 - AluSx SINE Alu -16 296 1 2373 77 3 7 chr1 176790192 176790491 -105403173 - AluY SINE Alu -13 298 1 2282 102 7 0 chr1 176790764 176791069 -105402595 - AluSx SINE Alu -5 307 1 2256 103 0 0 chr1 176791226 176791518 -105402146 - AluSx SINE Alu -20 292 1 2326 81 0 7 chr1 176791586 176791881 -105401783 - AluY SINE Alu -18 293 1 2156 92 16 30 chr1 176791882 176792185 -105401479 - AluSg SINE Alu -11 299 1 204 158 0 0 chr1 176792930 176792968 -105400696 + T-rich Low_complexity Low_complexity 1 38 0 1902 84 0 0 chr1 176793152 176793389 -105400275 - AluSx SINE Alu 0 312 76 2435 83 3 0 chr1 176793392 176793692 -105399972 - AluY SINE Alu -10 301 1 609 126 11 0 chr1 176793694 176793781 -105399883 - AluSx SINE Alu -223 89 2 2294 98 16 3 chr1 176793784 176794090 -105399574 - AluSx SINE Alu -2 310 1 1213 192 83 20 chr1 176794731 176795033 -105398631 - MER41B LTR ERV1 -36 599 279 2054 136 0 16 chr1 176795059 176795231 -105398433 - AluSx SINE Alu -7 305 139 2248 119 0 0 chr1 176795231 176795534 -105398130 - AluSg SINE Alu -7 303 1 2054 136 0 16 chr1 176795534 176795671 -105397993 - AluSx SINE Alu -173 139 1 1943 109 51 10 chr1 176795933 176796226 -105397438 - AluSq SINE Alu -8 305 1 2515 67 0 3 chr1 176796335 176796715 -105396949 - AluY SINE Alu 0 379 1 706 184 21 7 chr1 176797625 176797766 -105395898 - MER41B LTR ERV1 -345 290 148 8560 207 30 18 chr1 176797836 176798165 -105395499 - MER41B-int LTR ERV1 -1 6675 6351 1944 152 3 16 chr1 176798165 176798481 -105395183 - AluJb SINE Alu 0 312 1 8560 207 30 18 chr1 176798481 176799855 -105393809 - MER41B-int LTR ERV1 -325 6351 4952 1226 136 6 138 chr1 176799886 176800107 -105393557 - MER41B-int LTR ERV1 -1579 6177 5928 2115 106 7 10 chr1 176800107 176800399 -105393265 - AluSc SINE Alu -18 291 1 2512 69 3 0 chr1 176800408 176800712 -105392952 - AluY SINE Alu -6 305 1 1226 136 6 138 chr1 176800712 176800818 -105392846 - MER41B-int LTR ERV1 -1837 5919 4610 435 168 63 74 chr1 176800818 176800913 -105392751 - MER4B LTR ERV1 -436 174 81 2202 125 0 0 chr1 176800913 176801210 -105392454 - AluSx SINE Alu -15 297 1 1525 202 65 24 chr1 176801210 176801547 -105392117 - MER4B-int LTR ERV1 -24 6734 6384 704 155 134 7 chr1 176801547 176801689 -105391975 - MER4B-int LTR ERV1 -615 6143 5984 281 62 42 0 chr1 176801701 176801749 -105391915 - MER4B-int LTR ERV1 -1499 4832 4783 650 149 10 149 chr1 176801882 176801911 -105391753 - MER4B-int LTR ERV1 -4168 3952 3921 2290 92 0 7 chr1 176801911 176802205 -105391459 - AluSp SINE Alu -21 292 1 650 149 10 149 chr1 176802205 176802369 -105391295 - MER4B-int LTR ERV1 -4199 3921 3786 2119 166 95 109 chr1 176802627 176803288 -105390376 - MER4B-int LTR ERV1 -2748 3850 3182 2290 110 0 7 chr1 176803288 176803589 -105390075 - AluSx SINE Alu -13 299 1 2119 166 95 109 chr1 176803589 176804164 -105389500 - MER4B-int LTR ERV1 -3416 3182 2601 2046 144 17 0 chr1 176804164 176804463 -105389201 - AluSx SINE Alu -8 304 1 2119 166 95 109 chr1 176804463 176804642 -105389022 - MER4B-int LTR ERV1 -3997 2601 1204 344 116 54 202 chr1 176804642 176804694 -105388970 - LTR57-int LTR ERVL -4252 1091 1068 1620 168 39 11 chr1 176804694 176804974 -105388690 - AluJo SINE Alu -24 288 1 418 118 0 13 chr1 176804974 176805050 -105388614 - MER66-int LTR ERV1 -242 1544 1470 902 175 48 5 chr1 176805040 176805229 -105388435 - MER66-int LTR ERV1 -489 1297 1101 540 278 40 60 chr1 176805499 176805747 -105387917 - MER66-int LTR ERV1 -3529 3147 2905 616 191 76 165 chr1 176805875 176806232 -105387432 - MER66-int LTR ERV1 -5758 918 594 2336 94 3 3 chr1 176806408 176806717 -105386947 + AluSg SINE Alu 1 309 -1 299 158 32 21 chr1 176806859 176806954 -105386710 + C-rich Low_complexity Low_complexity 2 97 0 2456 82 10 0 chr1 176806954 176807259 -105386405 - AluY SINE Alu -3 308 1 2200 105 3 7 chr1 176807950 176808267 -105385397 - AluSg SINE Alu 0 310 2 2250 110 0 0 chr1 176808317 176808609 -105385055 - AluSx SINE Alu 0 312 21 407 121 45 0 chr1 176808609 176808675 -105384989 - AluY SINE Alu -59 252 184 744 184 0 144 chr1 176808714 176808964 -105384700 - AluJo SINE Alu -9 303 90 437 267 52 15 chr1 176808974 176809109 -105384555 - FLAM_C SINE Alu -3 140 1 387 0 0 0 chr1 176809120 176809163 -105384501 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 707 226 0 7 chr1 176809168 176809305 -105384359 - FRAM SINE Alu -30 146 11 1856 180 0 0 chr1 176809312 176809601 -105384063 - AluJb SINE Alu -23 289 1 392 242 20 74 chr1 176809611 176809733 -105383931 + MARNA DNA Mariner 43 170 -416 1783 162 14 7 chr1 176809733 176810029 -105383635 + AluJo SINE Alu 1 298 -14 392 242 20 74 chr1 176810029 176810041 -105383623 + MARNA DNA Mariner 170 171 -415 2413 84 3 0 chr1 176810041 176810338 -105383326 + AluSp SINE Alu 1 298 -15 392 242 20 74 chr1 176810338 176810351 -105383313 + MARNA DNA Mariner 171 183 -403 2205 116 7 0 chr1 176810369 176810670 -105382994 + AluSx SINE Alu 1 303 -9 1668 147 22 59 chr1 176810974 176811294 -105382370 - AluSx SINE Alu -4 308 1 331 189 0 0 chr1 176811494 176811547 -105382117 + AluJ/FRAM SINE Alu 224 276 -26 2364 99 0 3 chr1 176811789 176812092 -105381572 - AluSx SINE Alu -9 303 2 2043 119 3 22 chr1 176812093 176812411 -105381253 - AluSq SINE Alu -1 312 1 213 39 0 0 chr1 176812439 176812465 -105381199 + (TG)n Simple_repeat Simple_repeat 1 26 0 1583 164 0 48 chr1 176812465 176812758 -105380906 - AluJo SINE Alu -33 279 1 840 149 0 0 chr1 176812768 176812889 -105380775 - FLAM_C SINE Alu -12 131 11 713 239 0 6 chr1 176812912 176813075 -105380589 - FRAM SINE Alu 0 166 5 266 282 14 0 chr1 176813361 176813432 -105380232 - MIR3 SINE MIR -15 193 122 1150 202 33 82 chr1 176813815 176814032 -105379632 - L1ME3A LINE L1 -7 6163 5937 2323 106 0 3 chr1 176814032 176814335 -105379329 - AluSq SINE Alu -11 302 1 1150 202 33 82 chr1 176814335 176814395 -105379269 - L1ME3A LINE L1 -233 5937 5876 1663 154 20 59 chr1 176814395 176814554 -105379110 - AluJb SINE Alu -18 294 151 2220 99 7 10 chr1 176814554 176814856 -105378808 - AluSq SINE Alu -12 301 1 1663 154 20 59 chr1 176814856 176815001 -105378663 - AluJb SINE Alu -161 151 2 1150 202 33 82 chr1 176815001 176815026 -105378638 - L1ME3A LINE L1 -294 5876 5851 2290 93 3 0 chr1 176815026 176815327 -105378337 - AluSx SINE Alu -10 302 1 1150 202 33 82 chr1 176815327 176815429 -105378235 - L1ME3A LINE L1 -319 5851 5788 1402 170 19 63 chr1 176815429 176815747 -105377917 - AluJo SINE Alu -6 306 3 1150 202 33 82 chr1 176815747 176815775 -105377889 - L1ME3A LINE L1 -382 5788 5760 2280 94 0 31 chr1 176815837 176816155 -105377509 - AluSg SINE Alu -2 308 1 2150 118 3 37 chr1 176816155 176816476 -105377188 - AluSx SINE Alu -2 310 1 488 235 125 7 chr1 176816476 176816612 -105377052 - L1ME3A LINE L1 -404 5766 5615 1998 140 7 0 chr1 176816712 176817005 -105376659 - AluSx SINE Alu -17 295 1 523 253 82 34 chr1 176817045 176817338 -105376326 - L1ME3A LINE L1 -1998 4148 3842 998 114 0 0 chr1 176817389 176817521 -105376143 + AluSp SINE Alu 1 132 -181 2434 72 3 7 chr1 176817523 176817829 -105375835 + AluSp SINE Alu 1 305 -8 791 216 82 49 chr1 176817829 176818074 -105375590 - L1ME1 LINE L1 -77 6089 5837 2475 72 0 0 chr1 176819290 176819633 -105374031 - AluY SINE Alu 0 311 1 1250 149 138 45 chr1 176819639 176819908 -105373756 - AluJo SINE Alu -8 304 11 308 231 19 153 chr1 176820311 176820404 -105373260 + MER5A DNA MER1_type 2 51 -138 2256 115 10 0 chr1 176820404 176820708 -105372956 + AluSx SINE Alu 1 307 -5 308 231 19 153 chr1 176820708 176820830 -105372834 + MER5A DNA MER1_type 51 188 -1 232 291 68 73 chr1 176820960 176821062 -105372602 - L3 LINE CR1 -183 1394 1293 797 144 0 43 chr1 176821062 176821201 -105372463 + FLAM_C SINE Alu 1 133 0 232 291 68 73 chr1 176821201 176821304 -105372360 - L3 LINE CR1 -284 1293 1190 1948 123 13 43 chr1 176821309 176821610 -105372054 - AluSx SINE Alu -20 292 1 2009 118 17 0 chr1 176821610 176821897 -105371767 - AluSx SINE Alu -20 292 1 304 258 119 60 chr1 176821898 176822049 -105371615 - L3 LINE CR1 -466 1111 952 2069 112 35 0 chr1 176822206 176822493 -105371171 + AluSx SINE Alu 1 297 -15 1562 189 13 44 chr1 176822668 176822986 -105370678 - AluJo SINE Alu -4 308 1 1795 181 7 13 chr1 176823324 176823633 -105370031 + AluJo SINE Alu 1 307 -5 287 241 215 6 chr1 176823652 176823810 -105369854 - L1MC4 LINE L1 -11 8031 7841 198 0 0 0 chr1 176823822 176823844 -105369820 + (T)n Simple_repeat Simple_repeat 1 22 0 447 243 42 154 chr1 176824975 176825383 -105368281 - L1ME3A LINE L1 -10 6160 5799 1930 105 39 18 chr1 176825505 176825791 -105367873 - AluSx SINE Alu -20 292 1 1588 91 0 0 chr1 176825847 176826069 -105367595 - AluSg/x SINE Alu 0 305 84 195 266 0 0 chr1 176826725 176826789 -105366875 + CT-rich Low_complexity Low_complexity 3 66 0 1734 185 10 10 chr1 176827160 176827468 -105366196 - AluJb SINE Alu -4 308 1 2604 206 55 61 chr1 176827542 176827761 -105365903 - L1MC4 LINE L1 -69 7973 7754 2288 104 0 3 chr1 176827761 176828059 -105365605 + AluSx SINE Alu 1 297 -15 2604 206 55 61 chr1 176828059 176828547 -105365117 - L1MC4 LINE L1 -288 7754 7265 1861 135 45 3 chr1 176828547 176828836 -105364828 - AluSg SINE Alu -9 301 1 2273 107 7 3 chr1 176828836 176829146 -105364518 - AluSx SINE Alu -1 311 1 2604 206 55 61 chr1 176829146 176829199 -105364465 - L1MC4 LINE L1 -776 7266 7214 2506 74 3 3 chr1 176829199 176829510 -105364154 - AluY SINE Alu 0 311 1 2604 206 55 61 chr1 176829510 176829578 -105364086 - L1MC4 LINE L1 -828 7214 7147 1611 159 24 24 chr1 176829588 176829884 -105363780 - AluSx SINE Alu -16 296 1 2365 84 3 3 chr1 176829896 176830195 -105363469 - AluY SINE Alu -12 299 1 29 78 0 0 chr1 176830263 176830327 -105363337 + AT_rich Low_complexity Low_complexity 1 64 0 1928 134 11 0 chr1 176830327 176830611 -105363053 + AluSx SINE Alu 1 287 -25 485 148 34 11 chr1 176830611 176830787 -105362877 + (TA)n Simple_repeat Simple_repeat 1 180 0 45 34 0 0 chr1 176830787 176830846 -105362818 + AT_rich Low_complexity Low_complexity 1 59 0 354 195 35 0 chr1 176830846 176831102 -105362562 + (TA)n Simple_repeat Simple_repeat 1 264 0 357 273 139 21 chr1 176831233 176831427 -105362237 - L2 LINE L2 -60 3253 3037 1324 217 7 18 chr1 176831428 176831705 -105361959 + AluJo SINE Alu 23 296 -16 1476 175 79 11 chr1 176831718 176831998 -105361666 + AluJo SINE Alu 11 309 -3 531 303 93 16 chr1 176831998 176832282 -105361382 - L2 LINE L2 -267 3046 2719 2122 125 6 6 chr1 176832282 176832593 -105361071 + AluSx SINE Alu 2 312 0 531 303 93 16 chr1 176832593 176832723 -105360941 - L2 LINE L2 -594 2719 2600 821 201 24 0 chr1 176832723 176832892 -105360772 + L1MB7 LINE L1 4561 4733 -1413 2290 86 16 0 chr1 176832894 176833198 -105360466 - AluY SINE Alu -2 309 1 1387 200 10 41 chr1 176833218 176833513 -105360151 - AluJo SINE Alu -16 286 1 1446 212 38 0 chr1 176833516 176833804 -105359860 - AluJo SINE Alu -13 299 1 570 169 25 0 chr1 176833804 176833922 -105359742 + L1MB7 LINE L1 5703 5823 -361 550 226 38 0 chr1 176833939 176834045 -105359619 - AluJo/FRAM SINE Alu -56 256 147 1492 137 6 109 chr1 176834045 176834192 -105359472 + AluJo SINE Alu 18 118 -194 1903 133 40 0 chr1 176834192 176834470 -105359194 + AluSx SINE Alu 10 298 -14 1492 137 6 109 chr1 176834470 176834635 -105359029 + AluJo SINE Alu 118 298 -14 2030 133 7 0 chr1 176834637 176834931 -105358733 + AluSq SINE Alu 3 298 -15 1982 157 17 0 chr1 176834931 176835275 -105358389 + L1MB7 LINE L1 5827 6176 -8 1820 171 13 0 chr1 176835821 176836119 -105357545 - AluJb SINE Alu -8 304 3 1496 162 50 43 chr1 176836220 176836523 -105357141 - AluJo SINE Alu -7 305 1 2454 88 0 0 chr1 176837079 176837384 -105356280 + AluSc SINE Alu 1 309 0 204 271 43 43 chr1 176837500 176837570 -105356094 - L2 LINE L2 -6 3307 3238 1965 145 0 0 chr1 176837650 176837948 -105355716 - AluJo SINE Alu -29 283 1 723 161 0 51 chr1 176838613 176838723 -105354941 + AluJo/FLAM SINE Alu 3 106 -196 2133 110 0 0 chr1 176838723 176839022 -105354642 - AluSx SINE Alu -12 300 2 723 161 0 51 chr1 176839022 176839048 -105354616 + AluJo/FLAM SINE Alu 106 132 -170 195 42 0 0 chr1 176839485 176839509 -105354155 + (T)n Simple_repeat Simple_repeat 1 24 0 618 77 0 0 chr1 176839509 176839587 -105354077 - LTR12 LTR ERV1 -351 363 286 227 367 56 0 chr1 176839607 176839697 -105353967 - MIR SINE MIR -65 143 49 2114 110 10 0 chr1 176839751 176840051 -105353613 - AluSg SINE Alu -7 303 1 2077 100 10 0 chr1 176840058 176840347 -105353317 - AluSq SINE Alu -21 292 1 2138 85 7 0 chr1 176840393 176840704 -105352960 - AluSp SINE Alu 0 313 1 241 331 66 25 chr1 176840958 176841079 -105352585 - MER5A DNA MER1_type -43 146 21 2043 124 3 3 chr1 176841170 176841469 -105352195 - AluSx SINE Alu -12 300 2 2075 93 0 39 chr1 176841905 176842217 -105351447 + AluY SINE Alu 4 303 -8 207 88 0 0 chr1 176842488 176842522 -105351142 + (TA)n Simple_repeat Simple_repeat 1 34 0 1170 170 0 15 chr1 176842533 176842739 -105350925 - AluJo SINE Alu -21 291 89 2046 110 7 29 chr1 176842752 176843061 -105350603 - AluSx SINE Alu -10 302 1 283 71 0 24 chr1 176843118 176843160 -105350504 + AluSp/q SINE Alu 250 290 -13 841 176 11 53 chr1 176843275 176843462 -105350202 + AluJb SINE Alu 120 298 -14 37 0 0 0 chr1 176843462 176843499 -105350165 + AT_rich Low_complexity Low_complexity 1 37 0 2034 95 18 0 chr1 176843499 176843773 -105349891 + AluSg SINE Alu 1 279 -31 984 100 0 0 chr1 176843773 176843903 -105349761 - AluSq/x SINE Alu -178 135 6 518 242 95 23 chr1 176843914 176844178 -105349486 + L1M4 LINE L1 3766 4048 -2098 1602 158 0 33 chr1 176844182 176844486 -105349178 + AluJb SINE Alu 1 294 -18 1934 122 7 0 chr1 176844543 176844839 -105348825 - AluSx SINE Alu -14 298 1 1355 148 50 66 chr1 176844842 176845159 -105348505 - AluJo SINE Alu 0 312 1 362 208 183 107 chr1 176845179 176845455 -105348209 + L1ME3A LINE L1 5681 5968 -196 236 292 111 0 chr1 176850716 176850788 -105342876 - MIR SINE MIR -125 137 58 2141 92 17 0 chr1 176850788 176851080 -105342584 + AluSx SINE Alu 1 297 -15 665 186 57 8 chr1 176852224 176852348 -105341316 + AluJb SINE Alu 2 131 -181 2064 95 7 29 chr1 176852530 176852836 -105340828 - AluSq SINE Alu -14 299 1 830 169 0 0 chr1 176853290 176853420 -105340244 + FLAM_A SINE Alu 4 133 0 1843 139 17 3 chr1 176853423 176853718 -105339946 + AluSx SINE Alu 1 299 -13 510 183 0 70 chr1 176853746 176853861 -105339803 - FAM SINE Alu -43 142 36 261 75 0 0 chr1 176853901 176853941 -105339723 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1891 97 41 0 chr1 176853944 176854211 -105339453 - AluSp SINE Alu -35 278 1 1073 125 10 67 chr1 176855086 176855155 -105338509 + AluJo SINE Alu 11 82 -230 2198 93 0 10 chr1 176855155 176855456 -105338208 + AluSg SINE Alu 1 298 -12 1073 125 10 67 chr1 176855456 176855594 -105338070 + AluJo SINE Alu 82 206 -106 602 155 10 0 chr1 176855596 176855693 -105337971 - AluJ/FLAM SINE Alu -213 99 2 1505 188 0 7 chr1 176855731 176856013 -105337651 - AluJo SINE Alu -32 280 1 2242 112 0 0 chr1 176856030 176856343 -105337321 - AluSq SINE Alu 0 313 1 827 153 47 41 chr1 176856345 176856376 -105337288 - AluSp SINE Alu -11 302 273 1653 123 0 0 chr1 176856376 176856612 -105337052 - AluSx SINE Alu -76 236 1 827 153 47 41 chr1 176856612 176856750 -105336914 - AluSp SINE Alu -40 273 132 1986 129 17 0 chr1 176856755 176857049 -105336615 - AluSx SINE Alu -13 299 1 1632 141 19 99 chr1 176857074 176857202 -105336462 - HUERS-P3b LTR ERV1 -2237 5181 5044 2113 112 3 0 chr1 176857202 176857505 -105336159 - AluSp SINE Alu -9 304 1 1632 141 19 99 chr1 176857505 176857739 -105335925 - HUERS-P3b LTR ERV1 -2374 5044 4848 503 205 68 17 chr1 176857759 176857876 -105335788 - LTR12 LTR ERV1 -354 360 238 3270 230 12 45 chr1 176858082 176858756 -105334908 - HERV17 LTR ERV1 0 8626 7931 4069 99 12 60 chr1 176858756 176859394 -105334270 - LTR14B LTR ERVK 0 608 1 3270 230 12 45 chr1 176859394 176859504 -105334160 - HERV17 LTR ERV1 -695 7931 504 * 13666 197 6 8 chr1 176859494 176859675 -105333989 - HERV17 LTR ERV1 -4367 4259 4079 3762 107 2 4 chr1 176859675 176860187 -105333477 + MER9 LTR ERVK 1 511 0 13666 197 6 8 chr1 176860187 176862385 -105331279 - HERV17 LTR ERV1 -4547 4079 1884 7979 55 1 0 chr1 176862389 176863354 -105330310 - LTR5 LTR ERVK -3 966 1 445 63 11 168 chr1 176863354 176863449 -105330215 - SVA Other Other -450 936 857 65181 10 0 0 chr1 176863449 176870598 -105323066 - HERVK LTR ERVK -95 7148 1 7979 55 1 0 chr1 176870601 176871566 -105322098 - LTR5 LTR ERVK -3 966 1 1015 247 4 25 chr1 176871566 176871805 -105321859 - HERV17 LTR ERV1 -6738 1888 1655 2139 174 20 67 chr1 176872287 176872712 -105320952 - HERV17 LTR ERV1 -6853 238 143 2184 97 0 7 chr1 176872712 176873011 -105320653 - AluY SINE Alu -14 297 1 2139 174 20 67 chr1 176873011 176873148 -105320516 - HERV17 LTR ERV1 -6948 143 1 680 188 0 103 chr1 176873168 176873382 -105320282 - LTR12 LTR ERV1 -262 452 181 2374 62 0 0 chr1 176873388 176873680 -105319984 - AluY SINE Alu -19 292 1 15740 158 55 53 chr1 176873691 176873805 -105319859 - HERV17 LTR ERV1 -2013 4983 4871 2270 99 0 3 chr1 176873805 176874118 -105319546 - AluSp SINE Alu -1 312 1 15740 158 55 53 chr1 176874118 176875679 -105317985 - HERV17 LTR ERV1 -2125 4871 3315 2424 75 0 0 chr1 176875679 176875986 -105317678 + AluY SINE Alu 1 307 -4 15740 158 55 53 chr1 176875986 176876809 -105316855 - HERV17 LTR ERV1 -3681 3315 2495 2184 89 17 0 chr1 176876809 176877100 -105316564 - AluSp SINE Alu -17 296 1 15740 158 55 53 chr1 176877100 176877902 -105315762 - HERV17 LTR ERV1 -4501 2495 1673 4716 67 13 15 chr1 176877902 176878940 -105314724 - MER11A LTR ERVK 0 1266 1 7970 186 47 17 chr1 176878940 176880089 -105313575 - HERV17 LTR ERV1 -5318 1678 464 2074 127 0 10 chr1 176880089 176880224 -105313440 + AluSx SINE Alu 1 136 -176 2043 125 3 0 chr1 176880224 176880520 -105313144 + AluSp SINE Alu 1 297 -16 2074 127 0 10 chr1 176880520 176880692 -105312972 + AluSx SINE Alu 136 305 -7 7970 186 47 17 chr1 176880692 176881171 -105312493 - HERV17 LTR ERV1 -6532 464 1 4728 134 30 46 chr1 176881188 176881995 -105311669 - LTR25 LTR ERV1 0 794 1 2014 102 0 7 chr1 176882778 176883082 -105310582 + AluSq SINE Alu 1 302 0 1140 105 0 0 chr1 176883082 176883271 -105310393 + AluSg/x SINE Alu 131 319 0 1820 110 0 28 chr1 176883333 176883615 -105310049 + AluSq SINE Alu 1 274 -39 2351 43 40 7 chr1 176883620 176883921 -105309743 + AluY SINE Alu 1 311 0 198 71 0 0 chr1 176884255 176884283 -105309381 + (TTC)n Simple_repeat Simple_repeat 1 28 0 1914 150 0 16 chr1 176884651 176884964 -105308700 - AluSg SINE Alu 0 310 3 2208 84 14 3 chr1 176884975 176885271 -105308393 - AluSp SINE Alu -14 299 1 1540 149 149 44 chr1 176885989 176886331 -105307333 - MER51A LTR ERV1 0 634 257 263 83 0 0 chr1 176886329 176886365 -105307299 - MER51A LTR ERV1 -598 36 1 * 1317 300 36 49 chr1 176886365 176886842 -105306822 - MER51A-int LTR ERV1 0 8191 7947 2167 82 0 35 chr1 176886842 176887160 -105306504 + AluY SINE Alu 5 311 0 1317 300 36 49 chr1 176887160 176887707 -105305957 - MER51A-int LTR ERV1 -244 7947 7394 333 138 25 62 chr1 176888355 176888435 -105305229 - MER51A-int LTR ERV1 -1661 6738 6662 303 190 17 0 chr1 176888585 176888643 -105305021 - MER51A-int LTR ERV1 -271 7545 7487 23 0 0 0 chr1 176888704 176888727 -105304937 + AT_rich Low_complexity Low_complexity 1 23 0 2303 311 54 47 chr1 176888809 176889217 -105304447 - MER51A-int LTR ERV1 -1601 6155 5751 2114 125 0 0 chr1 176889217 176889514 -105304150 + AluSx SINE Alu 1 297 -15 2303 311 54 47 chr1 176889514 176891062 -105302602 - MER51A-int LTR ERV1 -2005 5751 4275 652 304 54 37 chr1 176891130 176891711 -105301953 - MER51A-int LTR ERV1 -1167 3787 2885 294 324 14 22 chr1 176892043 176892182 -105301482 - MER51A-int LTR ERV1 -4957 2799 2662 282 306 31 20 chr1 176893015 176893113 -105300551 - MER51A-int LTR ERV1 -5516 1902 1804 837 218 37 63 chr1 176893411 176893710 -105299954 - MER51A-int LTR ERV1 -4010 1965 1660 2035 128 3 3 chr1 176893710 176894016 -105299648 - AluSq SINE Alu -7 306 1 837 218 37 63 chr1 176894016 176894128 -105299536 - MER51A-int LTR ERV1 -4315 1660 554 2168 237 38 8 chr1 176894443 176894919 -105298745 - MER51A-int LTR ERV1 -3774 511 22 1139 162 82 5 chr1 176895052 176895287 -105298377 - MER51A LTR ERV1 0 640 391 315 0 0 0 chr1 176897206 176897241 -105296423 + (CA)n Simple_repeat Simple_repeat 2 36 0 2324 58 0 3 chr1 176897353 176897645 -105296019 - AluY SINE Alu -20 291 1 1894 144 0 41 chr1 176897898 176898217 -105295447 + AluSx SINE Alu 1 306 -6 387 321 58 15 chr1 176898242 176898379 -105295285 - L2 LINE L2 0 3313 3171 1697 142 4 18 chr1 176898408 176898689 -105294975 + AluSx SINE Alu 1 277 -35 2245 98 0 0 chr1 176898780 176899076 -105294588 + AluSc SINE Alu 1 296 -13 2071 127 0 0 chr1 176899129 176899436 -105294228 + AluSg SINE Alu 2 308 -2 351 288 23 23 chr1 176899454 176899586 -105294078 + HAL1 LINE L1 1361 1492 -1015 401 198 12 14 chr1 176899587 176899830 -105293834 + AluJo SINE Alu 6 299 -13 392 234 19 19 chr1 176899834 176899941 -105293723 + HAL1 LINE L1 1492 1598 -909 468 202 30 0 chr1 176899965 176900064 -105293600 - L1MD2 LINE L1 -15 6344 6243 1558 93 46 0 chr1 176900146 176900362 -105293302 + AluSx SINE Alu 5 230 -82 206 121 0 0 chr1 176900381 176900414 -105293250 + (A)n Simple_repeat Simple_repeat 1 33 0 328 64 0 0 chr1 176900459 176900506 -105293158 - Alu SINE Alu -1 300 254 803 125 0 21 chr1 176900653 176900797 -105292867 + AluSp/q SINE Alu 156 296 -17 209 314 100 0 chr1 176900914 176900984 -105292680 + L2 LINE L2 98 174 -3140 469 216 69 172 chr1 176901012 176901168 -105292496 + L2 LINE L2 3025 3133 -180 259 24 24 24 chr1 176901168 176901209 -105292455 + (TA)n Simple_repeat Simple_repeat 1 41 0 469 216 69 172 chr1 176901209 176901371 -105292293 + L2 LINE L2 3133 3310 -3 1573 152 9 41 chr1 176902383 176902698 -105290966 - AluJo SINE Alu -7 305 1 2174 94 3 0 chr1 176902705 176903002 -105290662 - AluSx SINE Alu -14 298 1 2312 94 0 0 chr1 176903964 176904273 -105289391 + AluSg SINE Alu 2 310 0 186 103 0 0 chr1 176904645 176904674 -105288990 + (TTC)n Simple_repeat Simple_repeat 3 31 0 2108 141 0 0 chr1 176904928 176905240 -105288424 + AluSx SINE Alu 1 312 0 1823 109 4 4 chr1 176905367 176905623 -105288041 - AluSp SINE Alu -55 258 3 2052 135 0 3 chr1 176905634 176905945 -105287719 - AluSg SINE Alu 0 310 1 1947 135 26 3 chr1 176907969 176908273 -105285391 + AluSx SINE Alu 1 311 -1 225 0 0 0 chr1 176908840 176908865 -105284799 + (CA)n Simple_repeat Simple_repeat 2 26 0 1901 119 23 26 chr1 176909228 176909531 -105284133 + AluSx SINE Alu 1 302 -10 2291 77 3 3 chr1 176909533 176909831 -105283833 + AluY SINE Alu 1 298 -13 762 118 9 0 chr1 176909833 176909943 -105283721 - AluJo/FLAM SINE Alu -196 116 6 364 291 24 31 chr1 176909969 176910096 -105283568 - HAL1 LINE L1 -1040 1467 1342 1706 161 6 6 chr1 176910168 176910479 -105283185 - AluSx SINE Alu -1 311 1 31 26 0 0 chr1 176910481 176910519 -105283145 + AT_rich Low_complexity Low_complexity 1 38 0 1307 274 46 54 chr1 176910519 176911150 -105282514 + HAL1 LINE L1 1693 2318 -189 1068 196 3 76 chr1 176911152 176911443 -105282221 + AluJo SINE Alu 43 312 0 1360 212 10 27 chr1 176911444 176911737 -105281927 + AluJo SINE Alu 1 288 -14 1851 137 0 48 chr1 176911770 176912084 -105281580 + AluSx SINE Alu 3 301 -11 202 352 11 11 chr1 176912091 176912179 -105281485 - L2 LINE L2 -1700 1614 1527 827 186 0 0 chr1 176912511 176912656 -105281008 - AluJb SINE Alu -20 292 148 1488 188 0 23 chr1 176912677 176912980 -105280684 - AluJo SINE Alu -16 296 1 1964 106 39 0 chr1 176913083 176913366 -105280298 + AluSq SINE Alu 1 294 -19 1330 181 53 23 chr1 176913676 176913975 -105279689 + AluJo SINE Alu 5 312 0 460 141 0 0 chr1 176913979 176914043 -105279621 - AluJ/FLAM SINE Alu -246 66 3 181 358 74 20 chr1 176914738 176914886 -105278778 - L3b LINE CR1 -316 1267 1112 2138 91 0 3 chr1 176915509 176915807 -105277857 - AluSc SINE Alu -12 297 1 1916 139 0 13 chr1 176916656 176916959 -105276705 - AluSx SINE Alu -13 299 1 1644 180 10 0 chr1 176916977 176917282 -105276382 - AluJb SINE Alu -4 308 1 1649 168 3 16 chr1 176917750 176918054 -105275610 - AluJo SINE Alu -12 300 1 352 283 43 51 chr1 176918177 176918315 -105275349 + L3b LINE CR1 1314 1450 -133 2157 93 0 0 chr1 176918499 176918790 -105274874 + AluSg SINE Alu 1 291 -19 2075 108 0 0 chr1 176919464 176919751 -105273913 - AluY SINE Alu -24 287 1 2390 115 45 0 chr1 176919756 176920130 -105273534 - L1PA10 LINE L1 -8 6160 5770 2208 71 44 0 chr1 176920185 176920482 -105273182 + AluYa5 SINE Alu 1 310 -1 520 179 38 0 chr1 176920623 176920729 -105272935 + AluJb SINE Alu 2 111 -201 23 54 0 0 chr1 176920736 176920773 -105272891 + AT_rich Low_complexity Low_complexity 1 37 0 700 121 78 126 chr1 176920784 176920810 -105272854 + AluSg/x SINE Alu 112 138 -174 2020 107 0 10 chr1 176920810 176921108 -105272556 + AluY SINE Alu 16 310 -1 700 121 78 126 chr1 176921108 176921287 -105272377 + AluSg/x SINE Alu 138 307 -5 794 253 201 70 chr1 176921301 176921608 -105272056 + HAL1 LINE L1 1744 2009 -498 2305 62 10 0 chr1 176921608 176921898 -105271766 - AluY SINE Alu -18 293 1 794 253 201 70 chr1 176921898 176922077 -105271587 + HAL1 LINE L1 2009 2294 -213 1027 223 15 49 chr1 176922103 176922196 -105271468 + AluJo SINE Alu 43 138 -174 1968 147 0 0 chr1 176922196 176922511 -105271153 + AluSx SINE Alu 2 316 0 1027 223 15 49 chr1 176922511 176922679 -105270985 + AluJo SINE Alu 138 298 -14 1469 195 19 16 chr1 176922694 176923001 -105270663 + AluJo SINE Alu 1 308 -4 1962 109 7 0 chr1 176923019 176923302 -105270362 + AluSq SINE Alu 1 285 -28 257 62 0 0 chr1 176923350 176923382 -105270282 + AluSp/q SINE Alu 254 285 -18 471 168 0 0 chr1 176923383 176923478 -105270186 + (CA)n Simple_repeat Simple_repeat 2 96 0 1792 122 16 39 chr1 176923497 176923809 -105269855 + AluSx SINE Alu 1 305 -7 278 277 43 78 chr1 176923920 176924061 -105269603 - L2 LINE L2 -1698 1616 1481 794 237 0 0 chr1 176924338 176924490 -105269174 - AluJb SINE Alu -12 300 149 1415 213 0 13 chr1 176924512 176924812 -105268852 - AluJo SINE Alu -16 296 1 1583 163 21 14 chr1 176925219 176925507 -105268157 + AluJo SINE Alu 1 290 -22 392 212 0 0 chr1 176925521 176925587 -105268077 - AluJ/FLAM SINE Alu -236 66 1 2168 71 17 0 chr1 176926150 176926444 -105267220 - AluY SINE Alu -12 299 1 185 244 67 0 chr1 176926502 176926547 -105267117 + L2 LINE L2 3251 3298 -15 2352 89 0 0 chr1 176926623 176926926 -105266738 + AluSx SINE Alu 1 303 -9 1487 183 18 0 chr1 176928503 176928788 -105264876 - AluJb SINE Alu -22 290 1 1653 160 10 30 chr1 176929027 176929327 -105264337 - AluJb SINE Alu -18 294 1 2737 13 0 0 chr1 176929354 176929660 -105264004 + AluYa5 SINE Alu 1 306 -5 185 0 40 0 chr1 176929782 176929807 -105263857 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 736 158 9 0 chr1 176929808 176929922 -105263742 - FLAM_C SINE Alu -18 115 1 2273 78 0 13 chr1 176930019 176930326 -105263338 + AluY SINE Alu 1 303 -8 1231 97 0 27 chr1 176930326 176930511 -105263153 + AluSq SINE Alu 134 313 0 1726 129 68 4 chr1 176930751 176931031 -105262633 - AluSx SINE Alu -14 298 1 2271 80 10 0 chr1 176931635 176931937 -105261727 - AluSp SINE Alu -8 305 1 2215 100 3 0 chr1 176931957 176932258 -105261406 - AluSg SINE Alu -8 302 1 2259 103 0 0 chr1 176932555 176932855 -105260809 - AluSx SINE Alu -12 300 1 1727 166 10 0 chr1 176933058 176933348 -105260316 + AluJb SINE Alu 1 293 -19 223 278 0 0 chr1 176933373 176933427 -105260237 + MIR SINE MIR 195 248 -14 1596 169 4 4 chr1 176933434 176933707 -105259957 + AluSx SINE Alu 1 273 -39 2164 90 7 7 chr1 176934086 176934386 -105259278 + AluY SINE Alu 1 300 -11 1513 200 3 27 chr1 176934396 176934696 -105258968 + AluJb SINE Alu 1 293 -19 30 0 0 0 chr1 176934770 176934800 -105258864 + AT_rich Low_complexity Low_complexity 1 30 0 1718 155 3 25 chr1 176934813 176935130 -105258534 + AluJo SINE Alu 3 312 0 412 216 162 65 chr1 176935167 176935352 -105258312 + MER46C DNA MER2_type 21 223 -115 237 159 0 0 chr1 176935385 176935429 -105258235 + A-rich Low_complexity Low_complexity 1 44 0 1239 187 92 14 chr1 176935664 176935947 -105257717 + MER2 DNA MER2_type 41 345 0 485 229 57 41 chr1 176935951 176936073 -105257591 + L2 LINE L2 3190 3313 0 3482 262 115 39 chr1 176936273 176936769 -105256895 + L2 LINE L2 1127 1584 -1730 2120 102 3 10 chr1 176936769 176937074 -105256590 + AluSx SINE Alu 1 303 -9 3482 262 115 39 chr1 176937074 176937377 -105256287 + L2 LINE L2 1584 1862 -1452 1583 169 10 38 chr1 176937377 176937691 -105255973 - AluJo SINE Alu -7 305 1 3482 262 115 39 chr1 176937691 176938286 -105255378 + L2 LINE L2 1862 2629 -685 1076 179 73 37 chr1 176938296 176938542 -105255122 - MLT2D LTR ERVL -48 366 112 6356 82 66 0 chr1 176938558 176939456 -105254208 - L1PA13 LINE L1 -8 6155 5226 916 216 63 35 chr1 176939456 176939711 -105253953 + L2 LINE L2 2616 2877 -437 757 100 0 0 chr1 176939738 176939838 -105253826 + AluSg/x SINE Alu 212 311 -1 1108 290 88 18 chr1 176939841 176940237 -105253427 + L2 LINE L2 2886 3309 -4 2242 110 0 31 chr1 176940289 176940608 -105253056 + AluSx SINE Alu 1 309 -3 828 177 0 0 chr1 176940608 176940738 -105252926 + AluJb SINE Alu 134 263 -49 292 214 0 18 chr1 176940739 176940795 -105252869 + AluJ/F(R)AM SINE Alu 128 182 -120 1004 198 0 38 chr1 176940798 176941010 -105252654 + AluJo SINE Alu 85 288 -24 809 71 20 0 chr1 176941208 176941307 -105252357 - AluSg/x SINE Alu -16 293 193 21 36 0 0 chr1 176941382 176941410 -105252254 + AT_rich Low_complexity Low_complexity 1 28 0 2376 94 0 3 chr1 176942385 176942684 -105250980 + AluSx SINE Alu 1 298 -14 245 219 0 62 chr1 176942686 176942782 -105250882 + L1MC4 LINE L1 6614 6703 -1339 529 229 50 7 chr1 176943055 176943195 -105250469 - MIR SINE MIR 0 262 117 2218 101 0 19 chr1 176943277 176943584 -105250080 + AluSg SINE Alu 1 301 -9 386 313 0 27 chr1 176943746 176943858 -105249806 - L2 LINE L2 -1 3271 3163 206 118 0 0 chr1 176943885 176943919 -105249745 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 600 191 9 0 chr1 176943935 176944040 -105249624 + AluJb SINE Alu 198 303 -9 287 287 178 0 chr1 176944340 176944441 -105249223 - L2 LINE L2 -4 3309 3191 266 319 11 11 chr1 176944461 176944555 -105249109 - L2 LINE L2 -939 2375 2282 2105 132 7 3 chr1 176944753 176945057 -105248607 + AluSq SINE Alu 1 305 -8 876 195 32 7 chr1 176945079 176945233 -105248431 - FRAM SINE Alu -6 160 3 849 242 0 12 chr1 176945345 176945510 -105248154 + FRAM SINE Alu 1 163 -13 2249 100 6 16 chr1 176945558 176945869 -105247795 + AluSp SINE Alu 1 308 -5 679 291 103 25 chr1 176945984 176946266 -105247398 - L2 LINE L2 -339 2975 2672 465 229 61 15 chr1 176946278 176946409 -105247255 + L2 LINE L2 2441 2577 -737 837 143 0 23 chr1 176946471 176946604 -105247060 + FRAM SINE Alu 40 169 -7 2328 99 3 10 chr1 176946606 176946919 -105246745 + AluY SINE Alu 1 311 0 372 295 78 46 chr1 176947184 176947401 -105246263 - MIR SINE MIR -7 255 32 1191 185 56 28 chr1 176947404 176947690 -105245974 + L1M4 LINE L1 4922 5215 -931 266 336 53 0 chr1 176947716 176947829 -105245835 + L2 LINE L2 2045 2163 -1151 1957 137 0 55 chr1 176947859 176948187 -105245477 - AluSx SINE Alu -1 311 2 255 31 0 0 chr1 176948187 176948219 -105245445 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1929 116 56 4 chr1 176948219 176948487 -105245177 - AluSg SINE Alu -28 282 1 919 190 43 25 chr1 176948489 176948652 -105245012 - FRAM SINE Alu 0 166 1 211 345 62 9 chr1 176948849 176948962 -105244702 + L2 LINE L2 2045 2163 -1151 480 76 0 51 chr1 176948977 176949056 -105244608 - Alu SINE Alu 0 309 235 188 368 54 10 chr1 176949056 176949260 -105244404 + L2 LINE L2 2458 2670 -644 24 0 0 0 chr1 176949279 176949303 -105244361 + AT_rich Low_complexity Low_complexity 1 24 0 1182 158 50 5 chr1 176949303 176949505 -105244159 - AluJo SINE Alu -13 299 89 549 160 0 30 chr1 176949611 176949711 -105243953 + AluSg/x SINE Alu 198 294 -16 1712 113 3 109 chr1 176949718 176950038 -105243626 + AluJo SINE Alu 11 296 -16 383 298 265 0 chr1 176950142 176950323 -105243341 + MIR SINE MIR 2 230 -32 1805 190 3 0 chr1 176950444 176950755 -105242909 + AluJo SINE Alu 1 312 0 311 326 68 0 chr1 176950822 176950954 -105242710 + L2 LINE L2 2922 3062 -251 248 159 0 0 chr1 176950955 176950999 -105242665 + Alu SINE Alu 172 215 -87 416 319 51 29 chr1 176951057 176951195 -105242469 + L2 LINE L2 3172 3312 -1 38 68 0 0 chr1 176951257 176951330 -105242334 + AT_rich Low_complexity Low_complexity 1 73 0 2370 88 0 0 chr1 176952224 176952520 -105241144 + AluY SINE Alu 1 296 -15 2213 90 35 3 chr1 176952638 176952927 -105240737 - AluSx SINE Alu -14 298 1 241 123 175 18 chr1 176953003 176953060 -105240604 + L1MB8 LINE L1 6112 6177 -1 261 379 11 0 chr1 176953060 176953147 -105240517 + MER91B DNA MER1_type 103 190 0 2160 129 3 0 chr1 176953185 176953488 -105240176 + AluSx SINE Alu 1 304 -8 252 286 14 0 chr1 176953535 176953605 -105240059 + L1MC/D LINE L1 4915 4985 -1161 1807 162 3 26 chr1 176953611 176953920 -105239744 + AluJb SINE Alu 6 307 -5 617 198 0 0 chr1 176953936 176954047 -105239617 - AluJo SINE Alu -6 306 196 804 126 0 0 chr1 176954049 176954160 -105239504 - AluJo SINE Alu -201 111 1 2365 84 0 3 chr1 176954247 176954543 -105239121 - AluY SINE Alu -16 295 1 307 290 162 50 chr1 176954733 176954847 -105238817 + L1MC/D LINE L1 5318 5418 -2390 2657 48 3 6 chr1 176954847 176955161 -105238503 + AluSp SINE Alu 1 313 0 307 290 162 50 chr1 176955161 176955349 -105238315 + L1MC/D LINE L1 5418 5654 -2154 2084 139 0 13 chr1 176955695 176955831 -105237833 + AluSx SINE Alu 1 137 -175 1997 143 3 7 chr1 176955831 176956138 -105237526 + AluSx SINE Alu 1 306 -6 2084 139 0 13 chr1 176956138 176956304 -105237360 + AluSx SINE Alu 137 299 -13 2257 94 3 0 chr1 176956435 176956723 -105236941 + AluSc SINE Alu 1 289 -20 2273 92 0 0 chr1 176956899 176957182 -105236482 - AluSc SINE Alu -1 308 26 2687 78 5 73 chr1 176957257 176957431 -105236233 + L1PA8 LINE L1 5673 5857 -315 1858 131 4 0 chr1 176957431 176957691 -105235973 + AluSp SINE Alu 34 294 -19 1795 100 4 19 chr1 176957691 176957949 -105235715 + AluY SINE Alu 44 298 -13 2687 78 5 73 chr1 176957949 176958196 -105235468 + L1PA8 LINE L1 5855 6066 -106 2090 135 0 3 chr1 176958196 176958500 -105235164 + AluSx SINE Alu 1 303 -9 745 228 76 15 chr1 176958664 176958861 -105234803 + L2 LINE L2 2129 2337 -977 1217 124 55 46 chr1 176958867 176959084 -105234580 - MER2 DNA MER2_type 0 345 127 1128 208 9 0 chr1 176959090 176959306 -105234358 + AluJo SINE Alu 74 291 -21 2190 93 45 0 chr1 176959312 176959601 -105234063 + AluSx SINE Alu 1 302 -10 740 192 54 0 chr1 176959601 176959731 -105233933 - MER2 DNA MER2_type -208 137 1 901 255 225 29 chr1 176959732 176959984 -105233680 + L2 LINE L2 2343 2544 -769 2234 110 3 0 chr1 176959984 176960274 -105233390 - AluSg SINE Alu -19 291 1 901 255 225 29 chr1 176960274 176960795 -105232869 + L2 LINE L2 2544 3278 -35 1749 155 11 0 chr1 176960799 176961077 -105232587 - AluJo SINE Alu -31 281 1 2824 7 0 0 chr1 176961335 176961637 -105232027 + AluYa5 SINE Alu 1 302 -9 2092 119 0 26 chr1 176961644 176961947 -105231717 + AluSg SINE Alu 1 295 -15 473 188 59 0 chr1 176962054 176962139 -105231525 + L2 LINE L2 3210 3299 -14 2388 77 3 3 chr1 176962141 176962440 -105231224 + AluSx SINE Alu 1 299 -13 1023 133 0 0 chr1 176962463 176962613 -105231051 + AluY SINE Alu 143 292 -19 614 312 53 32 chr1 176962842 176963089 -105230575 - MIR SINE MIR 0 262 11 240 315 126 0 chr1 176963505 176963616 -105230048 + L2 LINE L2 2935 3059 -213 1951 108 8 0 chr1 176963758 176964017 -105229647 - AluSg SINE Alu -15 295 35 1629 166 3 25 chr1 176964040 176964209 -105229455 - AluJo SINE Alu -11 301 139 2327 88 3 22 chr1 176964209 176964528 -105229136 - AluSp SINE Alu 0 313 1 1629 166 3 25 chr1 176964528 176964642 -105229022 - AluJo SINE Alu -173 139 24 210 37 0 0 chr1 176964653 176964680 -105228984 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2097 126 3 3 chr1 176964816 176965118 -105228546 + AluSx SINE Alu 1 302 -10 2279 106 3 0 chr1 176965172 176965475 -105228189 + AluSx SINE Alu 1 304 -8 679 236 18 55 chr1 176965838 176966058 -105227606 + L1MC5 LINE L1 7720 7931 -30 990 234 134 60 chr1 176966061 176966330 -105227334 + AluJb SINE Alu 1 289 -13 375 23 0 0 chr1 176966331 176966358 -105227306 + (TG)n Simple_repeat Simple_repeat 1 71 0 375 23 0 0 chr1 176966358 176966402 -105227262 + (TG)n Simple_repeat Simple_repeat 2 45 0 2122 99 14 7 chr1 176966413 176966697 -105226967 - AluSg SINE Alu -24 286 1 1409 208 47 0 chr1 176966725 176966999 -105226665 + AluJo SINE Alu 3 289 -23 2325 78 0 56 chr1 176967214 176967536 -105226128 - AluY SINE Alu -7 304 1 2184 106 0 7 chr1 176968146 176968439 -105225225 + AluSp SINE Alu 4 294 -19 1440 199 42 11 chr1 176968502 176968788 -105224876 - AluJo SINE Alu -17 295 1 1808 145 37 0 chr1 176968797 176969094 -105224570 - AluSx SINE Alu -3 309 2 2226 92 17 0 chr1 176969213 176969508 -105224156 + AluSp SINE Alu 1 300 -13 228 147 103 88 chr1 176970580 176970648 -105223016 + L2 LINE L2 3244 3312 -1 287 330 53 0 chr1 176971008 176971125 -105222539 + MIR SINE MIR 50 143 -65 1639 67 0 5 chr1 176973671 176973879 -105219785 + AluSc SINE Alu 1 207 -102 2319 100 0 10 chr1 176974073 176974382 -105219282 - AluY SINE Alu -5 306 1 21 57 0 0 chr1 176975300 176975335 -105218329 + AT_rich Low_complexity Low_complexity 1 35 0 205 339 97 0 chr1 176980659 176980721 -105212943 - L3 LINE CR1 -139 1438 1371 528 306 68 12 chr1 176980736 176981073 -105212591 + L1MC5 LINE L1 4491 4846 -1300 939 213 27 111 chr1 176981113 176981453 -105212211 + L1MC5 LINE L1 5587 5889 -1919 180 0 0 0 chr1 176981453 176981473 -105212191 + (CTATG)n Simple_repeat Simple_repeat 5 24 0 939 213 27 111 chr1 176981473 176981536 -105212128 + L1MC5 LINE L1 5889 5956 -1852 2396 83 3 0 chr1 176981736 176982037 -105211627 + AluSx SINE Alu 1 302 -10 2332 110 0 0 chr1 176982176 176982485 -105211179 + AluSx SINE Alu 1 309 -3 2088 113 14 3 chr1 176982508 176982800 -105210864 + AluSx SINE Alu 3 297 -15 1019 171 0 24 chr1 176982844 176983014 -105210650 - FRAM SINE Alu 0 166 1 654 188 67 18 chr1 176983235 176983400 -105210264 + L1MC5 LINE L1 6627 6799 -1162 669 317 194 10 chr1 176983495 176983908 -105209756 - L3 LINE CR1 -193 1384 896 1916 82 31 45 chr1 176983924 176984215 -105209449 + L1MA2 LINE L1 6018 6304 0 186 43 0 0 chr1 176984385 176984408 -105209256 + (A)n Simple_repeat Simple_repeat 1 23 0 2013 141 3 0 chr1 176984413 176984718 -105208946 + AluSp SINE Alu 1 306 -7 884 220 54 64 chr1 176984720 176984910 -105208754 + L1ME3A LINE L1 5857 6044 -126 1606 142 50 70 chr1 176984910 176985212 -105208452 - AluJo SINE Alu -15 297 2 884 220 54 64 chr1 176985212 176985334 -105208330 + L1ME3A LINE L1 6044 6166 -4 2290 103 0 0 chr1 176985412 176985714 -105207950 - AluSg1 SINE Alu -7 302 1 2088 88 19 56 chr1 176985907 176986227 -105207437 + AluSc SINE Alu 1 308 -1 2132 109 0 10 chr1 176986724 176987017 -105206647 + AluSg SINE Alu 5 294 -16 2131 97 42 0 chr1 176987018 176987307 -105206357 + AluY SINE Alu 1 301 -10 378 0 0 0 chr1 176987325 176987367 -105206297 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 2224 86 14 3 chr1 176987502 176987793 -105205871 - AluY SINE Alu -17 294 1 1667 154 11 32 chr1 176987859 176988144 -105205520 + AluSx SINE Alu 1 279 -33 348 24 0 0 chr1 176988144 176988185 -105205479 + (CA)n Simple_repeat Simple_repeat 1 41 0 1755 154 6 43 chr1 176988204 176988528 -105205136 + AluJo SINE Alu 1 312 0 261 184 19 107 chr1 176988587 176988690 -105204974 - L1M4 LINE L1 -749 5397 5304 22 0 0 0 chr1 176988807 176988829 -105204835 + AT_rich Low_complexity Low_complexity 1 22 0 643 140 11 0 chr1 176988836 176988929 -105204735 - AluJ/FLAM SINE Alu -217 95 2 374 352 51 0 chr1 176988972 176989148 -105204516 - MIR SINE MIR -65 197 13 1985 153 0 10 chr1 176989194 176989502 -105204162 - AluSx SINE Alu -7 305 1 2110 88 25 44 chr1 176989553 176989872 -105203792 - AluSp SINE Alu 0 313 1 571 105 35 133 chr1 176990318 176990363 -105203301 - L1MB7 LINE L1 -11 6173 6125 1269 230 35 7 chr1 176990363 176990646 -105203018 - AluJb SINE Alu -21 291 1 571 105 35 133 chr1 176990646 176990743 -105202921 - L1MB7 LINE L1 -59 6125 6045 2119 113 0 20 chr1 176991119 176991412 -105202252 + AluSx SINE Alu 5 291 -21 992 302 204 20 chr1 176991419 176992756 -105200908 - L2 LINE L2 -1 3312 1715 3446 135 73 52 chr1 176992763 176993244 -105200420 - Tigger3(Golem) DNA MER2_type -6 3022 2520 2169 118 6 10 chr1 176993244 176993557 -105200107 + AluSq SINE Alu 1 312 -1 3446 135 73 52 chr1 176993557 176993799 -105199865 - Tigger3(Golem) DNA MER2_type -508 2520 2284 593 202 39 0 chr1 176993799 176993903 -105199761 - Tigger3(Golem) DNA MER2_type -2921 108 1 1729 189 0 22 chr1 176994157 176994475 -105199189 - AluJo SINE Alu -1 311 1 2190 176 15 44 chr1 176994707 176994846 -105198818 + L1MB3 LINE L1 5646 5788 -395 1918 179 122 15 chr1 176994846 176995238 -105198426 + Tigger2a DNA MER2_type 1 434 0 2190 176 15 44 chr1 176995238 176995278 -105198386 + L1MB3 LINE L1 5788 5828 -355 2437 59 0 13 chr1 176995278 176995581 -105198083 - AluY SINE Alu -12 299 1 2190 176 15 44 chr1 176995581 176995877 -105197787 + L1MB3 LINE L1 5828 6108 -75 423 208 0 0 chr1 176995878 176995950 -105197714 - AluJ SINE Alu -123 189 118 2326 106 3 0 chr1 176995958 176996270 -105197394 - AluSp SINE Alu 0 313 1 498 107 0 27 chr1 176996272 176996347 -105197317 - AluJ SINE Alu -171 141 69 2059 135 3 26 chr1 176998216 176998528 -105195136 + AluSx SINE Alu 1 305 -7 650 239 0 36 chr1 176998727 176998865 -105194799 - FLAM_A SINE Alu 0 133 1 1453 184 0 0 chr1 176998926 176999159 -105194505 - AluSx SINE Alu -38 274 42 2376 84 0 0 chr1 176999204 176999490 -105194174 - AluSc SINE Alu -23 286 1 2409 93 0 7 chr1 176999588 176999898 -105193766 - AluSc SINE Alu 0 309 2 1623 171 7 0 chr1 177001283 177001552 -105192112 - AluJb SINE Alu -41 271 1 2260 97 3 3 chr1 177002101 177002401 -105191263 + AluSq SINE Alu 1 300 -13 180 97 0 0 chr1 177002551 177002582 -105191082 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 496 122 46 122 chr1 177003140 177003271 -105190393 + L1MB7 LINE L1 6045 6165 -19 3132 55 0 0 chr1 177003375 177003740 -105189924 - L1PA5 LINE L1 -7 6147 5783 2050 142 10 3 chr1 177003944 177004246 -105189418 + AluSx SINE Alu 1 304 -8 910 141 16 0 chr1 177004342 177004470 -105189194 + FLAM_C SINE Alu 2 131 -2 2296 81 10 0 chr1 177004530 177004825 -105188839 + AluSp SINE Alu 1 298 -15 1452 181 13 66 chr1 177005119 177005423 -105188241 + AluJo SINE Alu 1 288 -14 1901 155 3 7 chr1 177005889 177006186 -105187478 + AluSx SINE Alu 3 298 -14 228 284 67 55 chr1 177006693 177006728 -105186936 + L1MB3 LINE L1 4743 4776 -1370 687 220 0 88 chr1 177006728 177006910 -105186754 + FRAM SINE Alu 1 166 0 228 284 67 55 chr1 177006910 177007045 -105186619 + L1MB3 LINE L1 4776 4908 -1238 2125 113 0 3 chr1 177007045 177007352 -105186312 + AluSx SINE Alu 1 306 0 228 284 67 55 chr1 177007352 177007655 -105186009 + L1MB3 LINE L1 4908 5224 -922 2224 109 7 0 chr1 177007664 177007967 -105185697 + AluSg SINE Alu 2 306 -4 240 309 41 10 chr1 177007992 177008089 -105185575 + L1MC/D LINE L1 5821 5920 -1888 314 95 0 0 chr1 177008285 177008327 -105185337 - AluSc SINE Alu -8 294 253 1974 98 0 0 chr1 177009077 177009332 -105184332 - AluSc SINE Alu -53 256 2 2426 80 0 3 chr1 177009339 177009641 -105184023 - AluSp SINE Alu -12 301 1 1115 114 0 13 chr1 177009803 177009961 -105183703 + AluSg/x SINE Alu 140 295 -17 2043 122 0 0 chr1 177009978 177010256 -105183408 - AluSx SINE Alu -9 303 26 1523 159 28 31 chr1 177010311 177010601 -105183063 + AluJb SINE Alu 6 294 -18 816 176 48 27 chr1 177010619 177010806 -105182858 + L1MB3 LINE L1 5423 5613 -567 1557 163 16 29 chr1 177010815 177011122 -105182542 + AluJb SINE Alu 1 303 -9 617 208 76 30 chr1 177011168 177011364 -105182300 + L1ME LINE L1 5604 5820 -346 216 204 0 20 chr1 177011437 177011448 -105182216 + (CATATA)n Simple_repeat Simple_repeat 6 16 -37 1951 164 58 18 chr1 177011448 177011844 -105181820 + L1MB3 LINE L1 5765 6176 -7 216 204 0 20 chr1 177011844 177011881 -105181783 + (CATATA)n Simple_repeat Simple_repeat 16 53 0 4766 114 19 24 chr1 177011930 177013075 -105180589 + HSMAR1 DNA Mariner 7 1248 -39 2155 119 3 16 chr1 177013075 177013385 -105180279 + AluSq SINE Alu 1 306 -7 4766 114 19 24 chr1 177013385 177013424 -105180240 + HSMAR1 DNA Mariner 1248 1286 -1 35 24 0 0 chr1 177013731 177013773 -105179891 + AT_rich Low_complexity Low_complexity 1 42 0 3409 183 43 134 chr1 177013913 177014042 -105179622 + L1MB4 LINE L1 4196 4335 -1843 1115 168 184 43 chr1 177014042 177014298 -105179366 + AluJo SINE Alu 1 292 -10 3409 183 43 134 chr1 177014298 177014733 -105178931 + L1MB4 LINE L1 4335 4808 -1370 673 199 121 21 chr1 177014733 177014874 -105178790 + FRAM SINE Alu 1 155 -21 1948 110 0 48 chr1 177014880 177015202 -105178462 + AluSx SINE Alu 5 312 0 3409 183 43 134 chr1 177015202 177015319 -105178345 + L1MB4 LINE L1 4813 4939 -1239 2877 13 0 0 chr1 177015319 177015629 -105178035 - AluYa5 SINE Alu -1 310 1 3409 183 43 134 chr1 177015629 177016205 -105177459 + L1MB4 LINE L1 4939 5450 -728 206 218 32 24 chr1 177016236 177016360 -105177304 + GA-rich Low_complexity Low_complexity 3 127 0 * 269 148 0 19 chr1 177016340 177016394 -105177270 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2131 213 33 79 chr1 177016420 177016682 -105176982 + L1MB4 LINE L1 5513 5785 -395 2294 80 0 3 chr1 177016682 177016992 -105176672 + AluSp SINE Alu 1 309 0 2131 213 33 79 chr1 177016992 177017204 -105176460 + L1MB4 LINE L1 5785 6005 -175 2046 117 3 3 chr1 177017204 177017487 -105176177 - AluSq SINE Alu -29 284 2 2131 213 33 79 chr1 177017487 177017599 -105176065 + L1MB4 LINE L1 6005 6067 -113 2438 88 0 25 chr1 177017599 177017918 -105175746 + AluSx SINE Alu 1 311 -1 2131 213 33 79 chr1 177017918 177018027 -105175637 + L1MB4 LINE L1 6067 6179 -1 300 167 0 0 chr1 177018040 177018082 -105175582 + Alu SINE Alu 1 42 -258 2268 109 3 0 chr1 177018110 177018412 -105175252 + AluSq SINE Alu 1 303 -10 551 168 30 0 chr1 177019568 177019669 -105173995 + L1MA3 LINE L1 6197 6300 -5 390 405 20 0 chr1 177019815 177019968 -105173696 - L2 LINE L2 0 3272 3117 2346 76 0 16 chr1 177020216 177020519 -105173145 - AluSg SINE Alu -12 298 1 308 332 161 22 chr1 177020577 177020851 -105172813 - L2 LINE L2 -1 3312 3001 210 341 85 23 chr1 177020884 177021013 -105172651 - L2 LINE L2 0 3272 3136 2072 101 52 0 chr1 177021190 177021477 -105172187 + AluSx SINE Alu 3 304 -8 295 320 192 30 chr1 177021479 177021813 -105171851 - L2 LINE L2 -356 2958 2571 496 332 29 19 chr1 177021813 177021903 -105171761 - L2 LINE L2 -862 2452 2364 1869 131 10 14 chr1 177021903 177022200 -105171464 - AluJb SINE Alu -8 304 9 496 332 29 19 chr1 177022200 177022317 -105171347 - L2 LINE L2 -950 2364 2243 2042 132 7 0 chr1 177022490 177022778 -105170886 + AluSx SINE Alu 1 290 -22 1679 160 6 29 chr1 177022824 177023137 -105170527 + AluJo SINE Alu 1 306 -6 582 254 35 35 chr1 177023797 177023994 -105169670 + Charlie8 DNA MER1_type 68 264 -2153 256 354 22 22 chr1 177024093 177024274 -105169390 - L2 LINE L2 -2545 769 589 1796 180 3 0 chr1 177024316 177024616 -105169048 - AluSx SINE Alu -11 301 1 1984 253 80 56 chr1 177024694 177025405 -105168259 - MER21B LTR ERV1 -126 737 10 2670 20 7 3 chr1 177025658 177025963 -105167701 + AluYa5 SINE Alu 1 306 -5 185 0 40 0 chr1 177026085 177026110 -105167554 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 780 158 9 0 chr1 177026111 177026225 -105167439 - FLAM_C SINE Alu -18 115 1 2057 127 13 10 chr1 177026322 177026621 -105167043 + AluSx SINE Alu 1 300 -12 1479 177 52 17 chr1 177026940 177027093 -105166571 - AluJo SINE Alu -14 298 152 215 31 31 0 chr1 177027093 177027125 -105166539 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1966 123 7 0 chr1 177027125 177027401 -105166263 - AluSg SINE Alu -32 278 1 1479 177 52 17 chr1 177027401 177027534 -105166130 - AluJo SINE Alu -159 153 1 2432 81 3 0 chr1 177027717 177028026 -105165638 + AluY SINE Alu 1 310 -1 1392 151 176 21 chr1 177029814 177030093 -105163571 + MER7A DNA MER2_type 1 320 -26 1556 174 41 20 chr1 177031681 177031974 -105161690 + AluJb SINE Alu 1 299 -13 251 250 14 14 chr1 177032283 177032355 -105161309 + L3 LINE CR1 407 478 -1099 1773 166 0 0 chr1 177032358 177032641 -105161023 - AluJb SINE Alu -29 283 1 481 270 7 22 chr1 177032648 177032785 -105160879 - L2 LINE L2 0 3313 3179 2423 84 3 0 chr1 177032807 177033104 -105160560 - AluSp SINE Alu -15 298 1 860 219 45 5 chr1 177033173 177033374 -105160290 + AluJb SINE Alu 85 293 -19 515 289 129 43 chr1 177033384 177033616 -105160048 + L3 LINE CR1 587 838 -739 969 104 0 22 chr1 177033623 177033758 -105159906 - FLAM_C SINE Alu 0 133 2 1350 102 0 6 chr1 177034259 177034435 -105159229 - AluSq SINE Alu -138 175 1 2191 106 3 0 chr1 177034580 177034882 -105158782 + AluSq SINE Alu 3 305 -8 349 253 60 12 chr1 177035001 177035084 -105158580 + L2 LINE L2 3209 3295 -18 1888 146 0 24 chr1 177035140 177035465 -105158199 + AluSx SINE Alu 1 318 0 653 193 0 0 chr1 177035628 177035737 -105157927 + AluJo/FLAM SINE Alu 1 109 -203 2041 140 0 3 chr1 177035739 177036046 -105157618 + AluSx SINE Alu 1 306 -6 204 208 57 19 chr1 177036088 177036141 -105157523 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 273 263 0 0 chr1 177036188 177036245 -105157419 - U6 snRNA snRNA -1 106 50 1820 146 3 50 chr1 177036336 177036659 -105157005 - AluSx SINE Alu -4 308 1 2468 36 3 67 chr1 177037800 177038129 -105155535 - AluY SINE Alu -3 308 1 287 330 53 0 chr1 177038743 177038860 -105154804 + MIR SINE MIR 50 143 -65 2169 54 0 4 chr1 177041406 177041683 -105151981 + AluSc SINE Alu 1 276 -33 189 0 0 0 chr1 177041683 177041704 -105151960 + (CA)n Simple_repeat Simple_repeat 1 21 0 899 188 26 48 chr1 177042001 177042045 -105151619 + L1MD3 LINE L1 7739 7782 -213 1591 144 53 11 chr1 177042045 177042329 -105151335 + AluJb SINE Alu 1 296 -16 899 188 26 48 chr1 177042329 177042513 -105151151 + L1MD3 LINE L1 7782 7962 -33 817 211 24 0 chr1 177042516 177042682 -105150982 - AluJo/FRAM SINE Alu -9 303 134 2346 66 0 3 chr1 177042682 177042983 -105150681 - AluY SINE Alu -11 300 1 2649 193 72 3 chr1 177042984 177043605 -105150059 - L1MB7 LINE L1 -111 6073 5410 3593 120 26 20 chr1 177043609 177044150 -105149514 - LTR14 LTR ERVK -4 544 1 21890 174 64 57 chr1 177044152 177045456 -105148208 - HERVKC4 LTR ERVK -6 5256 3962 2277 85 3 0 chr1 177045456 177045761 -105147903 + AluSp SINE Alu 1 306 -7 21890 174 64 57 chr1 177045761 177049152 -105144512 - HERVKC4 LTR ERVK -1300 3962 519 5549 148 31 38 chr1 177049152 177050230 -105143434 - MER11C LTR ERVK 0 1071 1 21890 174 64 57 chr1 177050230 177050753 -105142911 - HERVKC4 LTR ERVK -4743 519 1 3758 103 26 20 chr1 177050753 177051297 -105142367 - LTR14 LTR ERVK 0 548 2 1482 181 29 26 chr1 177051310 177051382 -105142282 - L1MB7 LINE L1 -743 5403 5333 1723 191 0 7 chr1 177051382 177051691 -105141973 - AluJo SINE Alu -5 307 1 1482 181 29 26 chr1 177051691 177051719 -105141945 - L1MB7 LINE L1 -813 5333 5307 2180 100 0 0 chr1 177051719 177052010 -105141654 - AluSc SINE Alu -18 291 1 1482 181 29 26 chr1 177052010 177052256 -105141408 - L1MB7 LINE L1 -839 5307 5055 6438 67 6 40 chr1 177052351 177053339 -105140325 + SVA Other Other 433 1386 0 32 0 0 0 chr1 177053745 177053777 -105139887 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr1 177053789 177053813 -105139851 + (A)n Simple_repeat Simple_repeat 1 24 0 1999 83 0 40 chr1 177053825 177054126 -105139538 + AluY SINE Alu 1 289 -22 1355 198 156 6 chr1 177054145 177054326 -105139338 - L1MB7 LINE L1 -1109 5037 4885 2192 107 0 3 chr1 177054326 177054634 -105139030 + AluSg1 SINE Alu 1 307 -2 1355 198 156 6 chr1 177054634 177054805 -105138859 - L1MB7 LINE L1 -1261 4885 4632 2134 144 19 32 chr1 177054805 177055174 -105138490 - THE1B LTR MaLR 0 364 1 2085 110 0 0 chr1 177055184 177055474 -105138190 - AluY SINE Alu -21 290 1 1518 181 11 7 chr1 177055503 177055790 -105137874 + AluJo SINE Alu 1 288 -24 185 300 133 11 chr1 177056212 177056302 -105137362 + L2 LINE L2 3172 3272 0 1805 146 7 3 chr1 177056336 177056630 -105137034 + AluSx SINE Alu 1 295 -17 1716 175 21 0 chr1 177056648 177056939 -105136725 + AluJo SINE Alu 1 297 -15 1577 153 22 41 chr1 177056953 177057267 -105136397 + AluJo SINE Alu 1 308 -4 1795 154 3 3 chr1 177057314 177057639 -105136025 - AluSx SINE Alu 0 325 1 1211 232 34 24 chr1 177057647 177057944 -105135720 - AluJo SINE Alu -2 300 1 327 248 119 55 chr1 177057959 177058068 -105135596 + L2 LINE L2 3149 3264 -8 1610 129 92 4 chr1 177058130 177058428 -105135236 + AluSx SINE Alu 3 312 0 2197 106 6 6 chr1 177058449 177058761 -105134903 + AluSq SINE Alu 1 312 -1 2501 40 0 0 chr1 177058770 177059067 -105134597 + AluY SINE Alu 1 297 -14 568 230 116 98 chr1 177059478 177059681 -105133983 - L1ME3A LINE L1 -290 5880 5682 2040 117 0 3 chr1 177059681 177059981 -105133683 - AluSq SINE Alu -8 305 7 568 230 116 98 chr1 177059981 177060173 -105133491 - L1ME3A LINE L1 -488 5682 5495 1730 149 22 48 chr1 177060173 177060340 -105133324 - AluSx SINE Alu -5 307 150 2252 80 10 0 chr1 177060340 177060639 -105133025 - AluY SINE Alu -9 302 1 1730 149 22 48 chr1 177060639 177060786 -105132878 - AluSx SINE Alu -162 150 1 1431 174 19 55 chr1 177060788 177061098 -105132566 - AluJo SINE Alu -13 299 1 568 230 116 98 chr1 177061098 177061397 -105132267 - L1ME3A LINE L1 -675 5495 5188 2293 80 0 7 chr1 177061868 177062168 -105131496 - AluSg SINE Alu -12 298 1 571 259 95 21 chr1 177062222 177062465 -105131199 - MIR SINE MIR 0 262 2 2301 94 0 0 chr1 177062849 177063147 -105130517 + AluSx SINE Alu 1 298 -14 2053 163 43 40 chr1 177063256 177063803 -105129861 - MLT2A2 LTR ERVL 0 554 2 2345 79 3 0 chr1 177063971 177064276 -105129388 + AluSp SINE Alu 1 306 -7 599 173 9 36 chr1 177064315 177064425 -105129239 + FLAM_A SINE Alu 21 127 -15 258 271 12 35 chr1 177064844 177064929 -105128735 - MLT1I LTR MaLR -256 153 71 453 327 79 15 chr1 177065320 177065522 -105128142 + MIR SINE MIR 34 248 -14 192 351 99 0 chr1 177065584 177065735 -105127929 - L2 LINE L2 -215 3098 2933 537 238 8 0 chr1 177065882 177066004 -105127660 - FLAM_A SINE Alu -10 123 1 1994 116 34 0 chr1 177066123 177066416 -105127248 + AluSq SINE Alu 1 303 -10 2127 114 0 0 chr1 177066561 177066859 -105126805 + AluSx SINE Alu 1 298 -14 1726 152 7 7 chr1 177066880 177067169 -105126495 + AluJo SINE Alu 1 289 -23 189 0 0 0 chr1 177067169 177067190 -105126474 + (GA)n Simple_repeat Simple_repeat 2 22 0 2349 42 0 42 chr1 177067923 177068232 -105125432 + AluY SINE Alu 3 298 -13 2145 106 0 7 chr1 177068306 177068608 -105125056 + AluSq SINE Alu 1 300 -13 229 274 88 44 chr1 177068826 177068939 -105124725 - MIR SINE MIR -62 146 29 349 217 39 9 chr1 177069119 177069268 -105124396 - MER58B DNA MER1_type -3 338 37 2035 112 0 0 chr1 177069746 177070033 -105123631 + AluSx SINE Alu 1 287 -25 2134 102 3 10 chr1 177070045 177070340 -105123324 + AluY SINE Alu 1 293 -18 411 38 0 0 chr1 177070340 177070393 -105123271 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1529 167 27 44 chr1 177070752 177070876 -105122788 + AluJo SINE Alu 1 126 -176 2151 123 0 0 chr1 177070876 177071178 -105122486 - AluSq SINE Alu -11 302 1 2012 122 0 3 chr1 177071185 177071489 -105122175 - AluSg1 SINE Alu -6 303 1 1529 167 27 44 chr1 177071489 177071650 -105122014 + AluJo SINE Alu 132 289 -13 1869 156 7 7 chr1 177071687 177071995 -105121669 + AluJo SINE Alu 3 310 -2 2171 97 3 25 chr1 177072003 177072323 -105121341 + AluSp SINE Alu 1 313 0 2264 82 0 3 chr1 177072399 177072692 -105120972 + AluSc SINE Alu 1 292 -17 1904 124 18 0 chr1 177072697 177072980 -105120684 + AluSq SINE Alu 1 288 -25 237 132 0 0 chr1 177072982 177073020 -105120644 + (TA)n Simple_repeat Simple_repeat 2 39 0 227 73 0 0 chr1 177073023 177073064 -105120600 - LTR66 LTR ERVL -172 438 398 1728 139 13 27 chr1 177073764 177074065 -105119599 + AluJo SINE Alu 1 297 -15 671 204 8 23 chr1 177074077 177074209 -105119455 + FLAM_C SINE Alu 1 130 -3 382 195 0 0 chr1 177074209 177074286 -105119378 + LTR30 LTR ERV1 548 624 -98 794 121 7 43 chr1 177074327 177074467 -105119197 + FRAM SINE Alu 32 166 -10 262 273 0 0 chr1 177074727 177074782 -105118882 - MER66B LTR ERV1 -137 349 295 723 212 0 60 chr1 177074786 177074970 -105118694 - AluJb SINE Alu -3 309 137 2092 120 0 0 chr1 177074981 177075272 -105118392 - AluSq SINE Alu -22 291 1 2200 107 3 0 chr1 177075400 177075699 -105117965 + AluSx SINE Alu 1 300 -12 2215 100 3 0 chr1 177075996 177076297 -105117367 + AluSg SINE Alu 1 302 -8 2271 80 10 0 chr1 177076317 177076619 -105117045 + AluSp SINE Alu 1 305 -8 1682 129 72 4 chr1 177077223 177077502 -105116162 + AluSx SINE Alu 1 298 -14 1231 97 0 27 chr1 177077742 177077927 -105115737 - AluSq SINE Alu 0 313 134 2371 69 0 10 chr1 177077927 177078233 -105115431 - AluSx SINE Alu -9 303 1 946 171 18 6 chr1 177078282 177078446 -105115218 + FRAM SINE Alu 1 166 0 270 0 0 0 chr1 177078662 177078692 -105114972 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 831 156 7 0 chr1 177079002 177079137 -105114527 + FRAM SINE Alu 38 173 -3 326 303 20 10 chr1 177079768 177079867 -105113797 + MER5B DNA MER1_type 1 100 -78 1928 145 0 0 chr1 177079921 177080218 -105113446 + AluSx SINE Alu 1 297 -15 1926 133 10 7 chr1 177080220 177080529 -105113135 + AluSx SINE Alu 1 310 -2 1427 150 27 41 chr1 177081139 177081433 -105112231 + AluJo SINE Alu 1 290 -22 1753 76 13 0 chr1 177081442 177081678 -105111986 + AluSp SINE Alu 1 239 -74 370 303 0 20 chr1 177081690 177081789 -105111875 + L1MC4 LINE L1 6611 6707 -1335 337 286 0 22 chr1 177081807 177081898 -105111766 - L1MC4 LINE L1 -1340 6702 6614 217 231 39 0 chr1 177081900 177081952 -105111712 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 1337 196 22 41 chr1 177081969 177082285 -105111379 + AluJb SINE Alu 1 310 -2 2050 100 14 3 chr1 177082631 177082921 -105110743 + AluSg SINE Alu 3 295 -15 2113 214 170 64 chr1 177083749 177083866 -105109798 - L1MC4 LINE L1 -4 8038 7935 2231 105 0 3 chr1 177083866 177084172 -105109492 - AluSx SINE Alu -7 305 1 2113 214 170 64 chr1 177084172 177084384 -105109280 - L1MC4 LINE L1 -107 7935 7747 2275 71 0 3 chr1 177084384 177084679 -105108985 + AluSg SINE Alu 1 294 -16 2113 214 170 64 chr1 177084679 177085198 -105108466 - L1MC4 LINE L1 -295 7747 7285 2188 121 0 0 chr1 177085198 177085504 -105108160 + AluSg SINE Alu 1 306 -4 1720 168 0 10 chr1 177085513 177085811 -105107853 + AluJb SINE Alu 1 295 -17 2113 214 170 64 chr1 177085811 177085859 -105107805 - L1MC4 LINE L1 -764 7278 7236 876 225 136 16 chr1 177085859 177086117 -105107547 - AluJo SINE Alu -12 290 2 2113 214 170 64 chr1 177086117 177086621 -105107043 - L1MC4 LINE L1 -806 7236 6405 1594 100 60 67 chr1 177086624 177086923 -105106741 + AluSg SINE Alu 1 297 -13 2157 101 7 3 chr1 177086934 177087241 -105106423 + AluSq SINE Alu 1 308 -5 30 0 0 0 chr1 177087299 177087329 -105106335 + AT_rich Low_complexity Low_complexity 1 30 0 225 191 0 0 chr1 177087455 177087497 -105106167 + HAL1 LINE L1 1660 1701 -806 686 173 0 0 chr1 177087502 177087612 -105106052 + FLAM_C SINE Alu 2 111 -32 26 50 0 0 chr1 177087620 177087660 -105106004 + AT_rich Low_complexity Low_complexity 1 40 0 2020 107 0 10 chr1 177087698 177087996 -105105668 + AluY SINE Alu 16 310 -1 696 118 84 124 chr1 177087997 177088175 -105105489 + AluJo/FRAM SINE Alu 137 307 -5 732 255 79 9 chr1 177088189 177088485 -105105179 + HAL1 LINE L1 1744 2135 -372 2237 76 10 0 chr1 177088496 177088786 -105104878 - AluY SINE Alu -18 293 1 946 171 18 6 chr1 177088835 177088999 -105104665 + FRAM SINE Alu 1 166 0 270 0 0 0 chr1 177089215 177089245 -105104419 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 831 156 7 0 chr1 177089555 177089690 -105103974 + FRAM SINE Alu 38 173 -3 326 303 20 10 chr1 177090321 177090420 -105103244 + MER5B DNA MER1_type 1 100 -78 1928 145 0 0 chr1 177090474 177090771 -105102893 + AluSx SINE Alu 1 297 -15 2043 133 3 0 chr1 177090773 177091082 -105102582 + AluSx SINE Alu 1 310 -2 1427 150 27 41 chr1 177091692 177091986 -105101678 + AluJo SINE Alu 1 290 -22 1777 72 13 0 chr1 177091995 177092231 -105101433 + AluSp SINE Alu 1 239 -74 370 303 0 20 chr1 177092243 177092342 -105101322 + L1MC4 LINE L1 6611 6707 -1335 337 286 0 22 chr1 177092360 177092451 -105101213 - L1MC4 LINE L1 -1340 6702 6614 217 231 39 0 chr1 177092453 177092505 -105101159 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 1337 196 22 41 chr1 177092522 177092838 -105100826 + AluJb SINE Alu 1 310 -2 2075 107 10 0 chr1 177093184 177093474 -105100190 + AluSg SINE Alu 3 295 -15 382 206 168 0 chr1 177094302 177094409 -105099255 - L1MC4 LINE L1 -4 8038 7914 2231 105 0 3 chr1 177094419 177094725 -105098939 - AluSx SINE Alu -7 305 1 3602 210 174 53 chr1 177094726 177094937 -105098727 - L1MC4 LINE L1 -178 7864 7680 2275 71 0 3 chr1 177094937 177095232 -105098432 + AluSg SINE Alu 1 294 -16 3602 210 174 53 chr1 177095232 177095751 -105097913 - L1MC4 LINE L1 -362 7680 7225 2188 121 0 0 chr1 177095751 177096057 -105097607 + AluSg SINE Alu 1 306 -4 1699 171 0 10 chr1 177096066 177096364 -105097300 + AluJb SINE Alu 1 295 -17 3602 210 174 53 chr1 177096364 177096412 -105097252 - L1MC4 LINE L1 -824 7218 7177 904 221 136 16 chr1 177096412 177096670 -105096994 - AluJo SINE Alu -12 290 2 3602 210 174 53 chr1 177096670 177097172 -105096492 - L1MC4 LINE L1 -865 7177 6415 1624 100 57 67 chr1 177097177 177097477 -105096187 + AluSg SINE Alu 1 297 -13 2242 95 0 3 chr1 177097488 177097793 -105095871 + AluSx SINE Alu 1 304 -8 311 252 30 44 chr1 177097899 177098034 -105095630 - L1MC4 LINE L1 -1878 5930 5798 661 160 76 38 chr1 177098072 177098203 -105095461 - MER3 DNA MER1_type -73 136 1 2125 124 0 0 chr1 177098326 177098632 -105095032 + AluSx SINE Alu 1 306 -6 975 167 73 73 chr1 177098836 177098967 -105094697 - MER46A DNA MER2_type -2498 233 100 1840 157 10 0 chr1 177098967 177099266 -105094398 + AluJb SINE Alu 1 302 -10 975 167 73 73 chr1 177099266 177099367 -105094297 - MER46A DNA MER2_type -2630 101 1 1136 136 0 6 chr1 177099501 177099677 -105093987 + AluJb SINE Alu 126 300 -12 2110 106 0 0 chr1 177100532 177100824 -105092840 + AluSx SINE Alu 1 292 -20 1643 181 0 3 chr1 177100994 177101286 -105092378 + AluJo SINE Alu 1 291 -21 310 231 8 107 chr1 177101750 177101837 -105091827 - L2 LINE L2 -1232 2082 2009 1423 148 20 61 chr1 177101837 177102134 -105091530 + AluJo SINE Alu 5 289 -23 310 231 8 107 chr1 177102134 177102167 -105091497 - L2 LINE L2 -1305 2009 1974 243 320 141 0 chr1 177102375 177102453 -105091211 + L2 LINE L2 3116 3204 -68 377 338 97 19 chr1 177102663 177102870 -105090794 - L3 LINE CR1 -3 1574 1352 600 14 0 0 chr1 177102957 177103026 -105090638 + (TTATG)n Simple_repeat Simple_repeat 2 70 0 2181 87 0 7 chr1 177103026 177103315 -105090349 - AluSq SINE Alu -26 287 1 216 275 35 113 chr1 177103370 177103512 -105090152 - L3 LINE CR1 -318 1259 1129 25 65 0 0 chr1 177103553 177103599 -105090065 + AT_rich Low_complexity Low_complexity 1 46 0 2239 86 0 0 chr1 177103628 177103919 -105089745 - AluSq SINE Alu -22 291 1 2243 73 0 0 chr1 177103947 177104235 -105089429 - AluSc SINE Alu -21 288 1 1089 141 188 76 chr1 177104266 177104359 -105089305 - MER2 DNA MER2_type -6 339 258 1580 155 3 60 chr1 177104359 177104501 -105089163 + AluJo SINE Alu 3 119 -193 2213 82 0 3 chr1 177104501 177104794 -105088870 + AluSg SINE Alu 1 292 -18 1580 155 3 60 chr1 177104794 177104967 -105088697 + AluJo SINE Alu 119 300 -12 1089 141 188 76 chr1 177104967 177105177 -105088487 - MER2 DNA MER2_type -87 258 2 242 159 63 63 chr1 177105272 177105335 -105088329 - FLAM_A SINE Alu 0 133 71 1109 136 0 55 chr1 177105338 177105537 -105088127 - AluSg SINE Alu -109 201 14 2371 171 65 93 chr1 177105612 177105795 -105087869 - L1ME2 LINE L1 -13 6151 5964 2292 68 20 0 chr1 177105795 177106091 -105087573 - AluY SINE Alu -9 302 1 2371 171 65 93 chr1 177106091 177106603 -105087061 - L1ME2 LINE L1 -200 5964 5476 2047 119 0 3 chr1 177106607 177106909 -105086755 + AluSx SINE Alu 1 301 -11 975 171 0 0 chr1 177106929 177107104 -105086560 - AluSg/x SINE Alu -3 309 135 180 0 0 0 chr1 177107104 177107124 -105086540 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1981 116 0 3 chr1 177107124 177107409 -105086255 - AluSx SINE Alu -28 284 1 645 288 116 71 chr1 177107590 177107691 -105085973 - L3 LINE CR1 -634 943 848 2240 55 42 7 chr1 177107691 177107980 -105085684 + AluY SINE Alu 2 300 -11 645 288 116 71 chr1 177107980 177107993 -105085671 - L3 LINE CR1 -729 848 837 850 130 0 15 chr1 177107993 177108124 -105085540 + FLAM_C SINE Alu 1 129 -4 645 288 116 71 chr1 177108124 177108345 -105085319 - L3 LINE CR1 -740 837 592 1127 181 28 5 chr1 177108348 177108563 -105085101 - AluJb SINE Alu -8 304 85 295 244 6 147 chr1 177108648 177108775 -105084889 + L2 LINE L2 3180 3284 -29 2235 84 0 0 chr1 177108775 177109089 -105084575 - AluY SINE Alu 0 314 1 295 244 6 147 chr1 177109089 177109116 -105084548 + L2 LINE L2 3284 3313 0 1537 156 35 21 chr1 177109123 177109411 -105084253 + AluSx SINE Alu 1 292 -20 212 242 45 15 chr1 177109411 177109477 -105084187 - L3 LINE CR1 -1103 474 407 1211 204 57 7 chr1 177109794 177110074 -105083590 - AluJb SINE Alu -18 294 1 2141 101 13 22 chr1 177110226 177110542 -105083122 + AluSq SINE Alu 1 313 0 1762 114 52 0 chr1 177111946 177112246 -105081418 + AluSx SINE Alu 1 314 0 1487 185 133 3 chr1 177112314 177112622 -105081042 - MER7A DNA MER2_type 0 346 1 2038 118 3 0 chr1 177112849 177113136 -105080528 + AluSx SINE Alu 1 288 -24 2039 113 0 0 chr1 177113144 177113453 -105080211 + AluSg SINE Alu 1 309 0 2010 119 0 10 chr1 177113456 177113779 -105079885 + AluSq SINE Alu 4 313 0 1848 111 3 14 chr1 177114268 177114591 -105079073 - AluSx SINE Alu 0 320 1 207 69 0 0 chr1 177114754 177114783 -105078881 + (CCG)n Simple_repeat Simple_repeat 2 30 0 193 232 126 80 chr1 177115577 177115728 -105077936 + MIR SINE MIR 89 246 -16 2324 85 0 0 chr1 177116098 177116404 -105077260 + AluSq SINE Alu 1 306 -7 2203 94 0 13 chr1 177116726 177117034 -105076630 + AluSg SINE Alu 1 304 -6 1058 139 12 0 chr1 177117040 177117212 -105076452 + AluSq SINE Alu 140 313 0 424 202 48 39 chr1 177117290 177117394 -105076270 - MIR SINE MIR -59 203 99 201 188 106 71 chr1 177117646 177117731 -105075933 + L2 LINE L2 3225 3312 -1 519 186 0 100 chr1 177117763 177117903 -105075761 + MLT1E2 LTR MaLR 13 138 -488 545 136 0 37 chr1 177118236 177118495 -105075169 + AluJo SINE Alu 1 300 -12 2309 86 3 0 chr1 177118500 177118801 -105074863 - AluSp SINE Alu -11 302 1 369 163 23 58 chr1 177118821 177118907 -105074757 - FLAM_A SINE Alu -27 106 24 1658 142 3 70 chr1 177119015 177119195 -105074469 - AluSx SINE Alu -17 295 143 2321 28 41 3 chr1 177119195 177119486 -105074178 - AluY SINE Alu -9 302 1 1658 142 3 70 chr1 177119486 177119621 -105074043 - AluSx SINE Alu -169 143 1 1951 117 3 10 chr1 177119640 177119939 -105073725 + AluSq SINE Alu 1 297 -16 1993 118 0 0 chr1 177119942 177120264 -105073400 - AluSg SINE Alu 0 322 1 2127 117 0 3 chr1 177120324 177120624 -105073040 - AluSg SINE Alu -11 299 1 207 0 0 0 chr1 177120629 177120652 -105073012 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1747 130 4 11 chr1 177120726 177121002 -105072662 - AluSx SINE Alu 0 312 39 2274 78 0 7 chr1 177121005 177121321 -105072343 - AluY SINE Alu 0 311 1 2087 116 0 3 chr1 177121321 177121623 -105072041 - AluSg SINE Alu -9 301 1 612 193 90 66 chr1 177121668 177121834 -105071830 - MER46A DNA MER2_type -22 214 91 2490 201 92 9 chr1 177122188 177122649 -105071015 + MER44D DNA MER2_type 107 623 -1964 192 40 0 0 chr1 177122649 177122674 -105070990 + (TG)n Simple_repeat Simple_repeat 2 26 0 2490 201 92 9 chr1 177122674 177122765 -105070899 + MER44D DNA MER2_type 623 705 0 622 173 55 16 chr1 177122930 177123057 -105070607 + AluJo SINE Alu 1 132 -170 802 171 18 55 chr1 177123057 177123089 -105070575 + AluJo SINE Alu 134 166 -146 1322 128 34 51 chr1 177123089 177123323 -105070341 - MER30 DNA MER1_type 0 230 1 802 171 18 55 chr1 177123323 177123454 -105070210 + AluJo SINE Alu 166 291 -21 2122 101 20 3 chr1 177123652 177123950 -105069714 + AluSx SINE Alu 1 303 -9 1131 120 42 69 chr1 177124000 177124217 -105069447 - MER20 DNA MER1_type -7 212 2 209 262 161 133 chr1 177124223 177124319 -105069345 + L3 LINE CR1 303 395 -1182 1494 98 5 5 chr1 177124319 177124534 -105069130 + AluSg1 SINE Alu 1 215 -94 2160 102 3 0 chr1 177124536 177124831 -105068833 - AluSp SINE Alu -12 301 6 209 262 161 133 chr1 177124831 177124979 -105068685 + L3 LINE CR1 395 557 -1020 760 186 36 0 chr1 177125029 177125169 -105068495 - MER5B DNA MER1_type 0 178 34 1197 178 5 9 chr1 177125176 177125389 -105068275 + AluJo SINE Alu 10 221 -91 233 118 0 118 chr1 177125389 177125440 -105068224 + Alu SINE Alu 87 131 -171 2154 115 0 0 chr1 177125442 177125746 -105067918 + AluSq SINE Alu 1 304 -9 327 277 50 50 chr1 177125755 177125914 -105067750 + L3 LINE CR1 606 764 -813 929 214 50 32 chr1 177125917 177125961 -105067703 + L1MD3 LINE L1 7739 7781 -214 1547 180 42 3 chr1 177125961 177126245 -105067419 + AluJb SINE Alu 1 295 -17 929 214 50 32 chr1 177126245 177126347 -105067317 + L1MD3 LINE L1 7781 7893 -102 180 77 0 0 chr1 177126347 177126373 -105067291 + (TA)n Simple_repeat Simple_repeat 1 26 0 929 214 50 32 chr1 177126373 177126445 -105067219 + L1MD3 LINE L1 7893 7962 -33 1323 194 86 4 chr1 177126451 177126730 -105066934 - AluJo SINE Alu -10 302 1 2144 106 13 0 chr1 177126751 177127053 -105066611 - AluSx SINE Alu -6 306 1 1556 191 53 97 chr1 177127120 177127329 -105066335 - L1M4 LINE L1 -649 5529 5312 1654 176 0 7 chr1 177127329 177127630 -105066034 - AluJb SINE Alu -13 299 1 1556 191 53 97 chr1 177127630 177127641 -105066023 - L1M4 LINE L1 -866 5312 5302 2082 85 7 0 chr1 177127641 177128008 -105065656 - AluSx SINE Alu 0 369 1 1556 191 53 97 chr1 177128008 177128198 -105065466 - L1M4 LINE L1 -876 5302 5105 2128 79 14 0 chr1 177128198 177128511 -105065153 - AluSc SINE Alu 0 317 1 1556 191 53 97 chr1 177128511 177128618 -105065046 - L1M4 LINE L1 -1073 5105 4995 2395 71 0 3 chr1 177128618 177128929 -105064735 + AluSq SINE Alu 1 310 -3 1556 191 53 97 chr1 177128929 177128966 -105064698 - L1M4 LINE L1 -1183 4995 4958 2492 58 0 0 chr1 177128966 177129274 -105064390 - AluY SINE Alu -3 308 1 1556 191 53 97 chr1 177129274 177129639 -105064025 - L1M4 LINE L1 -1220 4958 4638 1697 158 7 7 chr1 177129639 177129930 -105063734 - AluJb SINE Alu -21 291 1 1556 191 53 97 chr1 177129930 177129971 -105063693 - L1M4 LINE L1 -1540 4638 4597 2013 86 25 71 chr1 177130223 177130394 -105063270 - AluSx SINE Alu -2 310 160 2507 46 0 0 chr1 177130394 177130696 -105062968 - AluY SINE Alu -9 302 1 2013 86 25 71 chr1 177130696 177130849 -105062815 - AluSx SINE Alu -152 160 1 503 254 109 45 chr1 177130850 177130912 -105062752 + L3 LINE CR1 1242 1299 -278 1979 104 3 21 chr1 177130912 177131240 -105062424 + AluSp SINE Alu 1 323 0 503 254 109 45 chr1 177131240 177131394 -105062270 + L3 LINE CR1 1299 1473 -104 229 299 191 36 chr1 177131394 177131588 -105062076 + MIR SINE MIR 1 224 -38 2145 92 7 3 chr1 177131692 177131987 -105061677 + AluSx SINE Alu 12 307 -5 546 227 31 8 chr1 177132000 177132128 -105061536 + AluJo/FLAM SINE Alu 3 133 -169 1420 158 0 35 chr1 177132130 177132389 -105061275 + AluJb SINE Alu 1 250 -62 1955 120 38 0 chr1 177132523 177132815 -105060849 + AluSx SINE Alu 1 303 -9 749 165 8 15 chr1 177133018 177133151 -105060513 - FLAM_C SINE Alu -1 132 1 1696 141 33 23 chr1 177133288 177133587 -105060077 - AluSx SINE Alu -9 303 2 1217 130 24 5 chr1 177133685 177133892 -105059772 - AluSg/x SINE Alu -17 295 85 400 98 0 0 chr1 177133892 177133943 -105059721 - AluSp/q SINE Alu -63 250 200 1070 61 8 0 chr1 177133945 177134077 -105059587 - AluY SINE Alu -178 133 1 2153 86 3 7 chr1 177134344 177134645 -105059019 - AluSg1 SINE Alu -9 300 1 1239 179 72 55 chr1 177134752 177135059 -105058605 - AluJo SINE Alu 0 312 1 1799 134 17 3 chr1 177135144 177135435 -105058229 + AluJo SINE Alu 1 295 -17 1711 155 35 0 chr1 177135983 177136267 -105057397 + AluJb SINE Alu 11 304 -8 1569 166 22 32 chr1 177136272 177136585 -105057079 + AluJo SINE Alu 1 310 -2 1322 196 87 4 chr1 177136639 177136789 -105056875 - AluJo SINE Alu -24 288 152 272 47 0 23 chr1 177136789 177136832 -105056832 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 1322 196 87 4 chr1 177136832 177136947 -105056717 - AluJo SINE Alu -160 152 1 393 209 113 61 chr1 177136962 177137077 -105056587 + L2 LINE L2 3149 3269 -3 2452 59 0 0 chr1 177137128 177137432 -105056232 + AluY SINE Alu 1 304 -7 366 253 105 28 chr1 177137854 177138060 -105055604 - L1ME2 LINE L1 -282 5880 5667 995 83 0 0 chr1 177138096 177138229 -105055435 - AluSq/x SINE Alu -179 133 1 546 199 134 91 chr1 177138233 177138544 -105055120 - L1P5 LINE L1 -665 5489 5163 1714 181 7 0 chr1 177138636 177138934 -105054730 - AluSx SINE Alu -12 300 1 2036 109 7 0 chr1 177139046 177139348 -105054316 + AluSx SINE Alu 1 304 -8 2627 26 0 3 chr1 177139348 177139655 -105054009 + AluY SINE Alu 1 306 -5 2170 80 3 10 chr1 177139814 177140113 -105053551 + AluSx SINE Alu 5 301 -11 218 240 0 0 chr1 177140200 177140250 -105053414 - L2 LINE L2 -1 3312 3263 595 259 95 21 chr1 177140277 177140520 -105053144 - MIR SINE MIR 0 262 2 2468 88 0 0 chr1 177140902 177141197 -105052467 + AluSx SINE Alu 1 295 -17 1860 168 45 39 chr1 177141300 177141836 -105051828 - MLT2A2 LTR ERVL 0 554 11 2513 58 7 0 chr1 177143396 177143690 -105049974 + AluSp SINE Alu 1 296 -17 608 202 8 32 chr1 177143726 177143850 -105049814 + FLAM_A SINE Alu 18 138 -4 1942 118 31 3 chr1 177144446 177144733 -105048931 - AluSq SINE Alu -18 295 1 2270 116 0 7 chr1 177144797 177145100 -105048564 - AluSx SINE Alu -11 301 1 498 348 54 18 chr1 177145304 177145525 -105048139 + MIR SINE MIR 20 248 -14 2506 58 0 3 chr1 177145573 177145867 -105047797 + AluY SINE Alu 1 293 -18 232 307 40 0 chr1 177145901 177145976 -105047688 - L2 LINE L2 -227 3086 3009 2116 115 17 0 chr1 177146006 177146319 -105047345 + AluSx SINE Alu 1 318 0 616 227 31 0 chr1 177146508 177146636 -105047028 - FLAM_A SINE Alu -1 132 1 2098 134 0 7 chr1 177146740 177147039 -105046625 + AluSx SINE Alu 1 297 -15 2380 91 0 3 chr1 177147056 177147364 -105046300 - AluY SINE Alu -4 307 1 1915 142 54 24 chr1 177147368 177147663 -105046001 - AluSc SINE Alu -5 304 1 1502 187 39 18 chr1 177148389 177148672 -105044992 + AluJo SINE Alu 1 289 -23 1771 176 0 14 chr1 177148715 177149011 -105044653 + AluJb SINE Alu 9 300 -12 1986 125 3 3 chr1 177149079 177149366 -105044298 + AluSq SINE Alu 7 293 -20 2382 92 0 0 chr1 177149402 177149696 -105043968 - AluSx SINE Alu -18 294 1 2283 109 0 3 chr1 177149701 177150004 -105043660 - AluSx SINE Alu -10 302 1 2198 113 10 0 chr1 177150008 177150301 -105043363 - AluSp SINE Alu -17 296 1 1961 168 7 0 chr1 177150328 177150632 -105043032 + AluSx SINE Alu 1 306 -6 964 171 17 34 chr1 177150912 177151088 -105042576 + AluJb SINE Alu 134 306 -6 8776 41 1 1 chr1 177151423 177152392 -105041272 - LTR5 LTR ERVK 0 969 1 1607 111 0 0 chr1 177152432 177152640 -105041024 - AluSg/x SINE Alu -10 302 95 1794 86 0 0 chr1 177152640 177152862 -105040802 - AluY SINE Alu -89 222 1 959 114 8 0 chr1 177152873 177153005 -105040659 - AluSq/x SINE Alu -179 133 1 2280 117 0 10 chr1 177153016 177153323 -105040341 - AluSx SINE Alu -8 304 1 918 163 0 0 chr1 177153395 177153536 -105040128 + FRAM SINE Alu 30 170 -6 2546 78 0 0 chr1 177153631 177153940 -105039724 - AluY SINE Alu -2 309 1 2183 99 11 0 chr1 177154083 177154401 -105039263 + AluSp SINE Alu 1 321 0 326 303 20 10 chr1 177154816 177154915 -105038749 + MER5B DNA MER1_type 1 100 -78 2073 108 9 94 chr1 177154969 177155311 -105038353 + AluSq SINE Alu 1 313 0 2323 104 0 0 chr1 177155462 177155760 -105037904 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr1 177155958 177155986 -105037678 + AT_rich Low_complexity Low_complexity 1 28 0 351 179 0 15 chr1 177156028 177156095 -105037569 + Tigger2 DNA MER2_type 4 69 -2649 267 183 0 17 chr1 177156079 177156139 -105037525 + Tigger2 DNA MER2_type 2267 2325 -393 * 653 282 30 13 chr1 177156146 177156447 -105037217 + L1M4 LINE L1 2664 2969 -3177 2016 153 3 0 chr1 177156480 177156775 -105036889 + AluJb SINE Alu 1 296 -16 26 30 0 0 chr1 177156775 177156808 -105036856 + AT_rich Low_complexity Low_complexity 1 33 0 2148 120 0 23 chr1 177156865 177157201 -105036463 + AluSx SINE Alu 1 312 0 895 271 48 92 chr1 177157203 177157416 -105036248 + L1M4 LINE L1 3305 3526 -2620 1037 187 146 19 chr1 177157416 177157683 -105035981 + AluJo SINE Alu 1 301 -1 895 271 48 92 chr1 177157683 177157922 -105035742 + L1M4 LINE L1 3526 3774 -2372 1884 130 6 80 chr1 177157922 177158246 -105035418 - AluSx SINE Alu -12 300 1 895 271 48 92 chr1 177158246 177158269 -105035395 + L1M4 LINE L1 3774 3796 -2350 2234 123 7 0 chr1 177158269 177158579 -105035085 - AluSx SINE Alu 0 312 1 855 164 0 0 chr1 177158579 177158707 -105034957 - AluJo/FLAM SINE Alu -174 128 1 895 271 48 92 chr1 177158707 177158718 -105034946 + L1M4 LINE L1 3795 3805 -2341 2187 113 3 0 chr1 177158718 177159018 -105034646 - AluSg SINE Alu -9 301 1 895 271 48 92 chr1 177159018 177159062 -105034602 + L1M4 LINE L1 3805 3849 -2297 2196 104 3 3 chr1 177159062 177159360 -105034304 - AluSg SINE Alu -12 298 1 895 271 48 92 chr1 177159360 177159603 -105034061 + L1M4 LINE L1 3849 4048 -2098 1748 157 27 10 chr1 177159607 177159901 -105033763 + AluJb SINE Alu 1 299 -13 283 194 78 29 chr1 177159958 177160061 -105033603 - L1MC4 LINE L1 -2 8040 7933 1159 187 43 90 chr1 177160066 177160366 -105033298 - AluJo SINE Alu -16 286 1 2492 64 0 10 chr1 177160376 177160688 -105032976 - AluY SINE Alu -2 309 1 2221 99 6 10 chr1 177160701 177161013 -105032651 - AluSq SINE Alu -2 311 1 461 214 145 73 chr1 177161027 177161104 -105032560 + L1ME3A LINE L1 5681 5751 -419 243 0 0 0 chr1 177161104 177161131 -105032533 + (TA)n Simple_repeat Simple_repeat 2 28 0 2638 40 0 10 chr1 177161131 177161434 -105032230 - AluY SINE Alu -11 300 1 461 214 145 73 chr1 177161434 177161589 -105032075 + L1ME3A LINE L1 5750 5931 -239 231 292 111 0 chr1 177166882 177166954 -105026710 - MIR SINE MIR -125 137 58 2284 92 17 0 chr1 177166954 177167246 -105026418 + AluSx SINE Alu 1 297 -15 683 186 57 8 chr1 177168390 177168514 -105025150 + AluJb SINE Alu 2 131 -181 1159 130 11 0 chr1 177168696 177168873 -105024791 - AluSq SINE Alu -14 299 121 2158 121 0 7 chr1 177169062 177169367 -105024297 - AluSx SINE Alu -8 304 2 332 82 0 0 chr1 177169408 177169457 -105024207 - AluSp/q SINE Alu -5 298 250 2192 110 7 29 chr1 177169514 177169823 -105023841 + AluSx SINE Alu 1 302 -10 1252 175 0 15 chr1 177169836 177170042 -105023622 + AluJo SINE Alu 89 291 -21 207 88 0 0 chr1 177170053 177170087 -105023577 + (TA)n Simple_repeat Simple_repeat 1 34 0 2088 92 0 67 chr1 177170362 177170533 -105023131 - AluSx SINE Alu -8 304 162 2349 97 7 0 chr1 177170533 177170833 -105022831 - AluSg SINE Alu -8 302 1 2088 92 0 67 chr1 177170833 177170976 -105022688 - AluSx SINE Alu -150 162 11 201 74 0 0 chr1 177171049 177171076 -105022588 + (TG)n Simple_repeat Simple_repeat 2 28 0 1629 171 24 27 chr1 177171113 177171411 -105022253 - AluJb SINE Alu -15 297 1 746 162 15 37 chr1 177172339 177172475 -105021189 + FLAM_C SINE Alu 1 133 0 2091 131 0 0 chr1 177173384 177173706 -105019958 + AluSx SINE Alu 1 322 0 280 287 10 50 chr1 177173708 177173809 -105019855 - MER2 DNA MER2_type -246 99 3 270 81 0 0 chr1 177173903 177173913 -105019751 + (TG)n Simple_repeat Simple_repeat 1 10 -336 2323 93 0 0 chr1 177173913 177174204 -105019460 + AluSx SINE Alu 1 291 -21 270 81 0 0 chr1 177174204 177174212 -105019452 + (TG)n Simple_repeat Simple_repeat 9 346 0 270 81 0 0 chr1 177174212 177174249 -105019415 + (TG)n Simple_repeat Simple_repeat 2 38 0 247 113 70 0 chr1 177174468 177174539 -105019125 + (TA)n Simple_repeat Simple_repeat 1 76 0 1059 219 5 5 chr1 177174539 177174763 -105018901 - AluJo SINE Alu -4 308 85 529 226 29 61 chr1 177174808 177174857 -105018807 + L1M4 LINE L1 4419 4468 -1678 2527 67 0 0 chr1 177174857 177175155 -105018509 - AluY SINE Alu -13 298 1 529 226 29 61 chr1 177175155 177175327 -105018337 + L1M4 LINE L1 4468 4631 -1515 1955 168 10 0 chr1 177175327 177175630 -105018034 + AluJb SINE Alu 1 306 -6 529 226 29 61 chr1 177175630 177175646 -105018018 + L1M4 LINE L1 4631 4646 -1500 1409 188 53 21 chr1 177175647 177175929 -105017735 - AluJb SINE Alu -5 307 17 2153 106 10 7 chr1 177176045 177176337 -105017327 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr1 177176588 177176616 -105017048 + AT_rich Low_complexity Low_complexity 1 28 0 267 138 0 163 chr1 177176660 177176718 -105016946 + Tigger2 DNA MER2_type 3 46 -2672 1946 133 18 0 chr1 177176718 177177003 -105016661 - AluSx SINE Alu -22 290 1 267 138 0 163 chr1 177177003 177177024 -105016640 + Tigger2 DNA MER2_type 46 69 -2649 267 183 0 17 chr1 177177008 177177068 -105016596 + Tigger2 DNA MER2_type 2267 2325 -393 657 279 30 13 chr1 177177075 177177376 -105016288 + L1M4 LINE L1 2664 2969 -3177 1927 150 10 22 chr1 177177405 177177540 -105016124 + AluJb SINE Alu 1 136 -176 2332 104 0 7 chr1 177177540 177177849 -105015815 + AluSx SINE Alu 1 307 -5 1927 150 10 22 chr1 177177849 177178027 -105015637 + AluJb SINE Alu 136 310 -2 25 0 0 0 chr1 177178027 177178052 -105015612 + AT_rich Low_complexity Low_complexity 1 25 0 2164 95 18 0 chr1 177178052 177178326 -105015338 + AluSg SINE Alu 1 279 -31 1051 100 0 0 chr1 177178326 177178456 -105015208 - AluSq/x SINE Alu -178 135 6 472 246 95 23 chr1 177178467 177178731 -105014933 + L1M4 LINE L1 3766 4048 -2098 1751 167 0 31 chr1 177178735 177179053 -105014611 + AluJb SINE Alu 1 308 -4 2078 122 7 0 chr1 177179096 177179392 -105014272 - AluSx SINE Alu -14 298 1 1504 148 50 66 chr1 177179395 177179712 -105013952 - AluJo SINE Alu 0 312 1 316 207 185 103 chr1 177179732 177179964 -105013700 + L1ME3A LINE L1 5681 5931 -239 2202 122 7 0 chr1 177183661 177183956 -105009708 + AluSq SINE Alu 1 297 -16 2265 121 0 0 chr1 177185455 177185753 -105007911 - AluSx SINE Alu -14 298 1 334 305 170 0 chr1 177185815 177185956 -105007708 - MIR SINE MIR -70 192 28 1991 123 19 19 chr1 177185957 177186266 -105007398 + AluSq SINE Alu 1 309 -4 688 186 57 8 chr1 177187387 177187511 -105006153 + AluJb SINE Alu 2 131 -181 725 248 0 0 chr1 177188248 177188385 -105005279 + FLAM_A SINE Alu 2 138 -4 705 129 0 115 chr1 177188390 177188529 -105005135 - FAM SINE Alu -27 158 36 543 194 10 0 chr1 177188563 177188666 -105004998 - AluSg/x SINE Alu -17 292 189 2339 104 0 3 chr1 177189210 177189517 -105004147 - AluSg SINE Alu -4 306 1 1953 134 20 33 chr1 177189592 177189756 -105003908 - AluJb SINE Alu -9 303 143 2000 136 17 10 chr1 177189756 177190057 -105003607 - AluSx SINE Alu -9 303 1 1953 134 20 33 chr1 177190057 177190197 -105003467 - AluJb SINE Alu -169 143 3 483 188 21 0 chr1 177190523 177190619 -105003045 - MIR SINE MIR -98 164 67 24 0 0 0 chr1 177190662 177190686 -105002978 + AT_rich Low_complexity Low_complexity 1 24 0 585 301 62 31 chr1 177190713 177190939 -105002725 + MIR SINE MIR 29 261 -1 2249 119 0 13 chr1 177191331 177191643 -105002021 + AluSx SINE Alu 1 308 -4 192 40 0 0 chr1 177192511 177192536 -105001128 + (TG)n Simple_repeat Simple_repeat 2 26 0 2442 81 3 0 chr1 177192682 177192980 -105000684 + AluSg SINE Alu 1 299 -11 2292 107 0 0 chr1 177193419 177193710 -104999954 - AluSx SINE Alu -19 293 3 1231 148 88 98 chr1 177193774 177194079 -104999585 - AluJo SINE Alu 0 302 1 368 97 16 0 chr1 177194086 177194148 -104999516 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1671 184 3 3 chr1 177194148 177194430 -104999234 - AluJo SINE Alu -28 284 3 222 313 12 60 chr1 177194644 177194727 -104998937 + L2 LINE L2 3174 3252 -20 2186 115 3 10 chr1 177195428 177195733 -104997931 - AluSg SINE Alu -6 304 2 629 101 321 0 chr1 177195756 177195865 -104997799 + U4 snRNA snRNA 1 144 -1 2309 96 10 0 chr1 177195897 177196190 -104997474 - AluSx SINE Alu -15 297 2 2399 74 3 3 chr1 177196361 177196658 -104997006 - AluY SINE Alu -14 297 1 227 197 30 15 chr1 177196696 177196762 -104996902 + (TA)n Simple_repeat Simple_repeat 1 67 0 1746 155 10 34 chr1 177196763 177197060 -104996604 - AluSx SINE Alu -17 295 6 2327 93 0 20 chr1 177197232 177197532 -104996132 - AluSg1 SINE Alu -15 294 1 207 189 0 0 chr1 177197553 177197590 -104996074 + A-rich Low_complexity Low_complexity 4 40 0 926 166 7 78 chr1 177197665 177197960 -104995704 + AluSx SINE Alu 2 275 -37 1356 161 96 20 chr1 177198018 177198267 -104995397 + AluJo SINE Alu 1 268 -44 2009 134 7 3 chr1 177198300 177198584 -104995080 + AluSx SINE Alu 10 294 -18 2555 66 0 3 chr1 177198685 177198987 -104994677 + AluY SINE Alu 1 301 -10 752 99 124 25 chr1 177199885 177200006 -104993658 + FLAM_C SINE Alu 1 133 0 252 0 0 0 chr1 177200013 177200041 -104993623 + (TA)n Simple_repeat Simple_repeat 2 29 0 2185 107 14 0 chr1 177202322 177202611 -104991053 - AluSp SINE Alu -20 293 1 1798 180 0 33 chr1 177202714 177202856 -104990808 + AluJb SINE Alu 1 146 -166 2057 110 13 45 chr1 177202856 177203165 -104990499 + AluSx SINE Alu 1 299 -13 1798 180 0 33 chr1 177203165 177203327 -104990337 + AluJb SINE Alu 146 295 -17 963 73 0 32 chr1 177203330 177203454 -104990210 + AluSq SINE Alu 5 124 -188 1307 118 0 0 chr1 177203878 177204056 -104989608 + AluSq SINE Alu 129 306 -7 2203 111 3 19 chr1 177204057 177204373 -104989291 + AluSx SINE Alu 2 312 0 2463 76 0 16 chr1 177204377 177204512 -104989152 + AluSg SINE Alu 1 137 -173 2425 56 7 0 chr1 177204512 177204800 -104988864 + AluY SINE Alu 1 290 -21 2463 76 0 16 chr1 177204800 177204979 -104988685 + AluSg SINE Alu 137 310 0 340 227 155 0 chr1 177205057 177205154 -104988510 - L1ME LINE L1 -330 5791 5680 1475 167 0 4 chr1 177205223 177205457 -104988207 + AluJb SINE Alu 1 233 -79 1178 169 40 22 chr1 177205466 177205691 -104987973 - AluJb SINE Alu -83 229 1 716 168 0 84 chr1 177206585 177206697 -104986967 + FLAM_A SINE Alu 2 101 -201 1859 167 7 10 chr1 177206697 177206996 -104986668 - AluJb SINE Alu -14 298 1 716 168 0 84 chr1 177206996 177207026 -104986638 + FLAM_A SINE Alu 101 132 -170 436 329 64 4 chr1 177207049 177207283 -104986381 - MIR SINE MIR -12 250 3 2246 118 0 3 chr1 177207328 177207625 -104986039 - AluSx SINE Alu -16 296 1 300 262 87 16 chr1 177207690 177207816 -104985848 - L1ME4a LINE L1 -23 6098 5964 276 172 103 78 chr1 177207859 177207975 -104985689 - MER112 DNA MER1_type -1 259 141 2433 96 3 6 chr1 177207975 177208289 -104985375 + AluSq SINE Alu 1 313 0 1707 160 0 14 chr1 177208323 177208628 -104985036 + AluJo SINE Alu 6 306 0 1926 105 29 79 chr1 177208737 177209052 -104984612 - AluSx SINE Alu -13 299 1 310 274 62 53 chr1 177209127 177209240 -104984424 + L2 LINE L2 3189 3302 -11 2427 66 7 7 chr1 177209305 177209609 -104984055 + AluY SINE Alu 1 304 -7 2443 80 0 0 chr1 177209670 177209970 -104983694 + AluY SINE Alu 1 300 -11 2272 107 0 0 chr1 177210059 177210359 -104983305 - AluSq SINE Alu -13 300 1 2371 81 3 10 chr1 177210591 177210899 -104982765 + AluY SINE Alu 1 306 -5 2300 111 0 0 chr1 177211136 177211434 -104982230 + AluSx SINE Alu 1 298 -14 1995 94 10 28 chr1 177213640 177213928 -104979736 + AluSc SINE Alu 1 283 -26 1983 134 21 3 chr1 177213941 177214232 -104979432 + AluSx SINE Alu 1 296 -16 243 203 0 0 chr1 177216027 177216086 -104977578 + A-rich Low_complexity Low_complexity 1 59 0 2277 120 0 3 chr1 177216608 177216917 -104976747 - AluSx SINE Alu -4 308 1 2184 103 4 0 chr1 177216997 177217303 -104976361 - AluSx SINE Alu 0 307 1 252 0 0 0 chr1 177219081 177219109 -104974555 + (CTGGGG)n Simple_repeat Simple_repeat 1 28 0 1027 132 35 35 chr1 177219727 177219901 -104973763 - AluSg SINE Alu -10 302 129 429 164 0 0 chr1 177219908 177219969 -104973695 - AluSg SINE Alu -244 67 7 1581 163 108 3 chr1 177219974 177220269 -104973395 - MER7A DNA MER2_type -22 324 1 366 256 48 87 chr1 177220302 177220468 -104973196 - MIR SINE MIR -62 200 42 2207 96 28 7 chr1 177220468 177220759 -104972905 - AluSq SINE Alu -9 304 8 366 256 48 87 chr1 177220759 177220799 -104972865 - MIR SINE MIR -220 42 2 25 0 0 0 chr1 177220851 177220876 -104972788 + AT_rich Low_complexity Low_complexity 1 25 0 890 101 7 94 chr1 177220876 177221025 -104972639 + AluSq/x SINE Alu 1 136 -177 2296 84 0 3 chr1 177221025 177221356 -104972308 + AluY SINE Alu 1 330 0 2342 66 10 3 chr1 177221654 177221943 -104971721 + AluY SINE Alu 1 291 -20 1339 184 60 0 chr1 177222049 177222299 -104971365 - AluJo SINE Alu -22 290 26 914 181 76 29 chr1 177222422 177222632 -104971032 + MER58A DNA MER1_type 1 220 -4 559 66 26 0 chr1 177223563 177223639 -104970025 - Alu SINE Alu -15 297 220 2172 117 7 3 chr1 177223642 177223941 -104969723 - AluSg SINE Alu -10 300 1 2503 11 50 0 chr1 177224420 177224699 -104968965 + AluYa5 SINE Alu 1 293 -18 882 219 58 31 chr1 177224820 177225044 -104968620 + MLT1C LTR MaLR 234 463 -4 1661 62 0 0 chr1 177225532 177225724 -104967940 + AluY SINE Alu 1 192 -119 1883 89 19 16 chr1 177225726 177225984 -104967680 - AluY SINE Alu -32 279 21 2313 112 0 0 chr1 177226065 177226368 -104967296 - AluSx SINE Alu -7 305 3 1755 150 7 27 chr1 177226368 177226526 -104967138 - AluJo SINE Alu -20 292 141 2553 40 0 17 chr1 177226526 177226824 -104966840 - AluY SINE Alu -15 296 4 1755 150 7 27 chr1 177226824 177226959 -104966705 - AluJo SINE Alu -171 141 5 2054 117 45 0 chr1 177227822 177228113 -104965551 - AluSx SINE Alu -8 304 1 2180 129 7 0 chr1 177229019 177229328 -104964336 + AluSx SINE Alu 1 311 -1 378 0 0 0 chr1 177229329 177229371 -104964293 + (CA)n Simple_repeat Simple_repeat 1 42 0 2108 102 0 7 chr1 177229586 177229895 -104963769 + AluSq SINE Alu 1 307 0 189 0 0 0 chr1 177230089 177230110 -104963554 + (A)n Simple_repeat Simple_repeat 1 21 0 2492 74 0 0 chr1 177230167 177230464 -104963200 + AluY SINE Alu 2 298 -13 23 0 0 0 chr1 177231386 177231409 -104962255 + AT_rich Low_complexity Low_complexity 1 23 0 2326 88 20 0 chr1 177231413 177231708 -104961956 - AluSx SINE Alu -11 301 1 1535 112 19 0 chr1 177232301 177232516 -104961148 + AluSq SINE Alu 74 292 -21 1480 163 119 4 chr1 177232535 177232812 -104960852 + AluJb SINE Alu 1 309 -3 201 94 0 0 chr1 177232815 177232847 -104960817 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 621 115 13 16 chr1 177232854 177233003 -104960661 + AluJb SINE Alu 14 195 -117 827 151 20 46 chr1 177233051 177233203 -104960461 - AluJb SINE Alu -143 169 22 607 226 51 0 chr1 177233411 177233548 -104960116 + MER3 DNA MER1_type 1 144 -65 312 111 0 0 chr1 177233567 177233612 -104960052 - MLT1A2 LTR MaLR -48 326 282 721 185 0 132 chr1 177233623 177233812 -104959852 - FRAM SINE Alu -19 157 1 261 224 0 0 chr1 177233812 177233861 -104959803 + MER3 DNA MER1_type 161 209 0 237 250 0 0 chr1 177233818 177233866 -104959798 - MER3 DNA MER1_type -119 90 43 * 1421 116 124 50 chr1 177234174 177234432 -104959232 + AluSc SINE Alu 1 277 -32 207 0 0 0 chr1 177234433 177234456 -104959208 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2337 69 21 0 chr1 177234787 177235077 -104958587 - AluSg SINE Alu -13 297 2 2186 90 12 47 chr1 177236707 177237028 -104956636 - AluSx SINE Alu -2 310 1 786 125 0 146 chr1 177237081 177237273 -104956391 - AluJo SINE Alu -115 197 34 2947 168 49 62 chr1 177237359 177238056 -104955608 - L1MB7 LINE L1 -20 6164 5477 2331 98 0 3 chr1 177238169 177238465 -104955199 - AluSq SINE Alu -18 295 1 2516 52 20 13 chr1 177238503 177238808 -104954856 - AluY SINE Alu -4 307 1 2115 134 3 0 chr1 177238852 177239151 -104954513 - AluSq SINE Alu -13 300 1 1354 173 93 0 chr1 177239202 177239450 -104954214 + AluJb SINE Alu 1 271 -41 883 126 132 36 chr1 177240301 177240468 -104953196 - AluJb SINE Alu -1 311 129 924 159 0 14 chr1 177240507 177240652 -104953012 - AluJo SINE Alu -135 177 35 1960 50 4 17 chr1 177240669 177240907 -104952757 - AluY SINE Alu -9 302 68 442 95 48 0 chr1 177240907 177240970 -104952694 + AluS SINE Alu 19 84 -229 1628 155 76 10 chr1 177240981 177241272 -104952392 + AluJb SINE Alu 2 311 -1 1043 79 0 0 chr1 177241272 177241399 -104952265 - AluSg/x SINE Alu -15 295 169 1396 86 10 48 chr1 177241499 177241708 -104951956 + AluSq SINE Alu 113 313 0 2116 117 0 3 chr1 177241742 177242032 -104951632 + AluSg SINE Alu 1 289 -21 2259 96 0 7 chr1 177242424 177242727 -104950937 - AluY SINE Alu -10 301 1 2083 102 0 7 chr1 177242727 177243022 -104950642 - AluSq SINE Alu -20 293 1 402 195 0 0 chr1 177243544 177243631 -104950033 + (TG)n Simple_repeat Simple_repeat 1 87 0 2452 58 7 0 chr1 177243843 177244152 -104949512 + AluY SINE Alu 1 311 0 1018 151 36 0 chr1 177244282 177244448 -104949216 - AluSg/x SINE Alu -6 306 135 809 213 0 0 chr1 177244787 177244947 -104948717 + AluJb SINE Alu 137 296 -16 817 243 83 5 chr1 177245009 177245227 -104948437 - MIR SINE MIR 0 262 28 1439 126 0 26 chr1 177245330 177245560 -104948104 - AluY SINE Alu -5 306 83 548 173 4 18 chr1 177245608 177245736 -104947928 - L1MA10 LINE L1 0 6304 6037 1273 103 0 6 chr1 177245861 177246036 -104947628 - AluSg SINE Alu -112 198 25 405 232 5 63 chr1 177246080 177246270 -104947394 + CT-rich Low_complexity Low_complexity 1 179 0 340 314 102 0 chr1 177247358 177247495 -104946169 - MIR SINE MIR -56 206 56 295 193 0 0 chr1 177250040 177250097 -104943567 + MIR SINE MIR 88 144 -118 2094 92 0 7 chr1 177250140 177250446 -104943218 - AluSx SINE Alu 0 304 1 387 0 0 0 chr1 177251609 177251652 -104942012 + (TG)n Simple_repeat Simple_repeat 1 43 0 2163 106 0 26 chr1 177251985 177252296 -104941368 - AluSx SINE Alu -9 303 1 367 70 0 35 chr1 177253784 177253841 -104939823 + Alu SINE Alu 242 296 -5 1894 153 0 7 chr1 177253922 177254223 -104939441 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 177254232 177254254 -104939410 + AT_rich Low_complexity Low_complexity 1 22 0 752 148 17 0 chr1 177254254 177254369 -104939295 - FLAM_C SINE Alu -25 118 2 2087 123 0 3 chr1 177254395 177254696 -104938968 + AluSx SINE Alu 1 300 -12 2202 57 0 18 chr1 177254699 177255026 -104938638 + AluY SINE Alu 5 326 0 641 186 53 9 chr1 177255038 177255151 -104938513 + AluJo/FLAM SINE Alu 1 118 -184 1864 73 36 90 chr1 177255152 177255484 -104938180 - AluSp SINE Alu 0 316 1 23 33 0 0 chr1 177255491 177255521 -104938143 + AT_rich Low_complexity Low_complexity 1 30 0 674 222 7 0 chr1 177255530 177255665 -104937999 - MER2 DNA MER2_type -209 136 1 2010 125 67 9 chr1 177255673 177256000 -104937664 - MER7A DNA MER2_type 0 346 3 344 276 37 0 chr1 177256009 177256143 -104937521 + L1MC4 LINE L1 7902 8040 -2 181 217 22 0 chr1 177256304 177256350 -104937314 - L2 LINE L2 -93 3179 3133 2265 96 0 0 chr1 177256655 177256956 -104936708 - AluSx SINE Alu -11 301 1 1765 148 0 4 chr1 177258863 177259127 -104934537 + AluSx SINE Alu 13 275 -37 221 0 35 0 chr1 177259131 177259160 -104934504 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 577 204 115 0 chr1 177259172 177259285 -104934379 + FLAM_A SINE Alu 2 127 -6 1184 160 35 94 chr1 177259316 177259469 -104934195 - AluJb SINE Alu -36 276 116 2111 104 0 17 chr1 177259469 177259803 -104933861 + AluSx SINE Alu 1 329 0 2097 112 0 3 chr1 177259803 177260097 -104933567 + AluSc SINE Alu 1 293 -16 2059 127 0 0 chr1 177260100 177260436 -104933228 + AluSg SINE Alu 1 336 0 1184 160 35 94 chr1 177260436 177260560 -104933104 - AluJb SINE Alu -197 115 6 2196 110 0 3 chr1 177263486 177263787 -104929877 + AluSx SINE Alu 1 300 -12 682 259 58 117 chr1 177263789 177264013 -104929651 + MLT1J LTR MaLR 1 198 -313 1857 105 0 19 chr1 177264013 177264280 -104929384 + AluSx SINE Alu 51 312 0 682 259 58 117 chr1 177264280 177264414 -104929250 + MLT1J LTR MaLR 198 338 -173 1473 164 55 62 chr1 177264484 177264776 -104928888 - AluJo SINE Alu -12 290 1 2406 55 0 16 chr1 177264783 177265091 -104928573 - AluY SINE Alu -8 303 1 524 300 28 0 chr1 177265221 177265401 -104928263 - L1MC4a LINE L1 -1879 5929 5745 2090 100 34 0 chr1 177265630 177265921 -104927743 - AluSx SINE Alu -11 301 1 411 282 272 0 chr1 177265995 177266190 -104927474 + MIR SINE MIR 2 249 -13 1933 123 28 0 chr1 177266227 177266511 -104927153 - AluSx SINE Alu -20 292 1 21 36 0 0 chr1 177266513 177266541 -104927123 + AT_rich Low_complexity Low_complexity 1 28 0 2147 110 3 0 chr1 177266611 177266902 -104926762 - AluSx SINE Alu -20 292 1 857 136 186 50 chr1 177267080 177267279 -104926385 + AluJo SINE Alu 86 311 -1 1380 230 93 23 chr1 177267307 177267746 -104925918 - Tigger8 DNA MER2_type -140 526 57 268 315 11 11 chr1 177268263 177268352 -104925312 + MIR SINE MIR 82 170 -92 2118 107 3 13 chr1 177268789 177269098 -104924566 - AluSq SINE Alu -7 306 1 31 0 0 0 chr1 177269435 177269466 -104924198 + AT_rich Low_complexity Low_complexity 1 31 0 1958 124 7 3 chr1 177269468 177269767 -104923897 - AluSx SINE Alu -12 300 1 1890 141 0 13 chr1 177269769 177270068 -104923596 - AluSx SINE Alu -17 295 1 1785 183 3 13 chr1 177270402 177270714 -104922950 + AluJo SINE Alu 1 309 -3 2380 69 0 3 chr1 177271491 177271794 -104921870 - AluY SINE Alu -9 302 1 224 290 131 9 chr1 177272532 177272639 -104921025 + MIR SINE MIR 104 223 -39 2279 104 0 0 chr1 177273556 177273863 -104919801 - AluSg SINE Alu -3 307 1 1740 154 0 62 chr1 177273884 177274082 -104919582 - AluJo SINE Alu -5 307 98 2353 85 0 0 chr1 177274082 177274387 -104919277 + AluSx SINE Alu 1 305 -7 429 20 0 0 chr1 177274387 177274437 -104919227 + (TA)n Simple_repeat Simple_repeat 2 51 0 1740 154 0 62 chr1 177274437 177274562 -104919102 - AluJo SINE Alu -212 100 3 180 374 20 30 chr1 177274597 177274696 -104918968 + L2 LINE L2 3155 3252 -20 1983 92 95 0 chr1 177274857 177275141 -104918523 + AluSx SINE Alu 1 311 -1 283 351 53 18 chr1 177276198 177276312 -104917352 - MIR SINE MIR -75 133 16 409 309 74 17 chr1 177277554 177277729 -104915935 - MIR SINE MIR -58 204 20 907 121 7 0 chr1 177278061 177278202 -104915462 - AluSg/x SINE Alu -29 283 142 8626 72 6 2 chr1 177278202 177279269 -104914395 - MER11C LTR ERVK 0 1071 1 810 182 0 0 chr1 177279284 177279416 -104914248 - FLAM_C SINE Alu -1 132 1 285 29 0 0 chr1 177279808 177279842 -104913822 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1716 110 4 0 chr1 177279866 177280111 -104913553 - AluSq SINE Alu -10 303 58 223 306 230 19 chr1 177280165 177280363 -104913301 + MIR SINE MIR 2 247 -15 2482 20 7 3 chr1 177280363 177280658 -104913006 + AluYa5 SINE Alu 1 296 -15 204 40 0 0 chr1 177280798 177280823 -104912841 + (TA)n Simple_repeat Simple_repeat 1 25 0 2156 87 0 0 chr1 177280823 177281109 -104912555 - AluY SINE Alu -25 286 1 2293 106 0 0 chr1 177281687 177281999 -104911665 - AluSx SINE Alu 0 312 1 828 213 12 0 chr1 177283888 177284057 -104909607 - FRAM SINE Alu -8 168 1 368 277 101 20 chr1 177285576 177285724 -104907940 - MIR SINE MIR -66 196 37 247 164 0 66 chr1 177287970 177288031 -104905633 + G-rich Low_complexity Low_complexity 3 59 0 215 258 23 55 chr1 177288616 177288744 -104904920 + (CGGGG)n Simple_repeat Simple_repeat 5 128 0 193 206 143 48 chr1 177289465 177289528 -104904136 + MIR SINE MIR 99 167 -95 534 262 26 73 chr1 177290675 177290908 -104902756 + MIR SINE MIR 13 234 -28 236 183 17 33 chr1 177290958 177291018 -104902646 - MIR3 SINE MIR -50 158 100 199 286 149 60 chr1 177291072 177291143 -104902521 - L2 LINE L2 -46 3267 3204 1573 135 8 4 chr1 177291143 177291388 -104902276 - AluJb SINE Alu -66 246 1 199 286 149 60 chr1 177291388 177291484 -104902180 - L2 LINE L2 -109 3204 3085 180 0 0 0 chr1 177292910 177292930 -104900734 + (TTTTTG)n Simple_repeat Simple_repeat 1 20 0 184 225 25 0 chr1 177294758 177294798 -104898866 - L2 LINE L2 -1 3271 3231 833 169 0 0 chr1 177295255 177295379 -104898285 + FLAM_C SINE Alu 1 124 -19 23 33 0 0 chr1 177295386 177295416 -104898248 + AT_rich Low_complexity Low_complexity 1 30 0 2456 109 0 0 chr1 177295666 177295977 -104897687 - AluSx SINE Alu -1 311 1 218 295 16 0 chr1 177296271 177296332 -104897332 - L2 LINE L2 -1 3312 3251 1968 171 0 10 chr1 177296438 177296743 -104896921 + AluJb SINE Alu 3 304 -8 816 116 16 0 chr1 177297545 177297674 -104895990 - FLAM_C SINE Alu -2 131 1 2292 103 0 7 chr1 177297845 177298145 -104895519 - AluSx SINE Alu -14 298 1 256 295 6 44 chr1 177298344 177298527 -104895137 + GA-rich Low_complexity Low_complexity 2 177 0 357 188 0 0 chr1 177301144 177301213 -104892451 + LTR30 LTR ERV1 552 620 -102 216 97 0 0 chr1 177301221 177301252 -104892412 + (A)n Simple_repeat Simple_repeat 1 31 0 209 230 14 0 chr1 177301478 177301552 -104892112 + C-rich Low_complexity Low_complexity 3 77 0 237 49 0 0 chr1 177301660 177301701 -104891963 + Alu SINE Alu 262 302 -1 219 189 0 0 chr1 177302072 177302125 -104891539 + GA-rich Low_complexity Low_complexity 2 54 0 221 0 35 0 chr1 177302544 177302573 -104891091 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 591 95 0 12 chr1 177302647 177302731 -104890933 + AluJb SINE Alu 64 146 -166 2327 111 0 9 chr1 177302731 177303047 -104890617 + AluSq SINE Alu 1 313 0 300 358 74 7 chr1 177303120 177303268 -104890396 - L1ME LINE L1 -5907 163 6 2380 93 3 6 chr1 177303455 177303766 -104889898 - AluSg SINE Alu 0 310 1 414 0 0 0 chr1 177303996 177304042 -104889622 + (TA)n Simple_repeat Simple_repeat 1 46 0 1470 134 5 0 chr1 177304043 177304252 -104889412 - AluJo SINE Alu -16 296 87 444 116 0 0 chr1 177304266 177304335 -104889329 - AluSp/q SINE Alu -16 297 229 2590 65 0 3 chr1 177306484 177306794 -104886870 + AluY SINE Alu 1 309 -2 1315 149 66 86 chr1 177307087 177307264 -104886400 - AluJo SINE Alu -6 296 117 1982 135 24 3 chr1 177307264 177307552 -104886112 + AluSx SINE Alu 1 294 -18 2137 123 10 0 chr1 177307554 177307856 -104885808 + AluSx SINE Alu 7 311 -1 1315 149 66 86 chr1 177307856 177307977 -104885687 - AluJo SINE Alu -186 116 1 2113 102 67 0 chr1 177307977 177308262 -104885402 - AluSx SINE Alu -8 304 1 680 142 17 0 chr1 177308292 177308412 -104885252 - FLAM_C SINE Alu -11 122 1 2328 101 3 0 chr1 177308416 177308712 -104884952 - AluSp SINE Alu -8 305 9 2630 52 0 0 chr1 177308826 177309131 -104884533 + AluY SINE Alu 1 305 -6 2360 100 0 7 chr1 177309282 177309591 -104884073 + AluSx SINE Alu 1 307 -5 198 289 13 26 chr1 177309638 177309714 -104883950 - MER5B DNA MER1_type -102 76 2 3623 80 2 2 chr1 177309991 177310477 -104883187 + MER11C LTR ERVK 586 1071 0 1042 120 0 0 chr1 177310477 177310649 -104883015 + AluSg/x SINE Alu 140 311 0 217 185 19 74 chr1 177310757 177310865 -104882799 + (CAGAGA)n Simple_repeat Simple_repeat 6 107 0 409 210 0 50 chr1 177312189 177312289 -104881375 + MIR3 SINE MIR 111 205 -3 309 298 36 12 chr1 177313109 177313193 -104880471 - MIR SINE MIR -104 104 19 180 97 0 0 chr1 177313310 177313341 -104880323 + (TG)n Simple_repeat Simple_repeat 1 31 0 1896 118 41 4 chr1 177313476 177313747 -104879917 + AluJo SINE Alu 1 281 -31 2211 92 14 0 chr1 177313749 177314054 -104879610 - AluSq SINE Alu 0 309 1 2424 77 0 40 chr1 177314057 177314381 -104879283 - AluY SINE Alu 0 311 1 185 275 77 55 chr1 177314418 177314509 -104879155 - L2 LINE L2 -237 3035 2943 2309 82 27 3 chr1 177314515 177314808 -104878856 + AluY SINE Alu 1 300 -11 1270 127 0 17 chr1 177314808 177314989 -104878675 + AluSq SINE Alu 134 311 -2 219 152 0 0 chr1 177315031 177315064 -104878600 + polypyrimidine Low_complexity Low_complexity 4 36 0 2121 117 3 13 chr1 177315067 177315366 -104878298 - AluSp SINE Alu -16 297 2 2450 90 0 0 chr1 177315998 177316297 -104877367 + AluSg SINE Alu 1 299 -11 1585 164 74 40 chr1 177316927 177317094 -104876570 - AluJb SINE Alu -3 309 149 216 0 0 0 chr1 177317094 177317118 -104876546 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2329 85 4 0 chr1 177317118 177317399 -104876265 - AluSq SINE Alu -31 282 1 1585 164 74 40 chr1 177317399 177317529 -104876135 - AluJb SINE Alu -162 150 1 2314 116 3 0 chr1 177318566 177318877 -104874787 - AluSx SINE Alu 0 312 1 890 169 32 0 chr1 177318921 177319075 -104874589 - FRAM SINE Alu -14 162 4 2326 102 7 7 chr1 177319096 177319401 -104874263 + AluSq SINE Alu 1 305 -8 765 175 0 0 chr1 177319411 177319537 -104874127 + AluJo/FLAM SINE Alu 3 128 -174 1282 90 0 0 chr1 177319537 177319693 -104873971 - AluSg/x SINE Alu -20 292 137 2332 86 10 0 chr1 177319757 177320049 -104873615 + AluSp SINE Alu 1 295 -18 2303 82 3 0 chr1 177320080 177320389 -104873275 - AluSx SINE Alu 0 310 1 1878 150 3 23 chr1 177320391 177320691 -104872973 - AluJb SINE Alu -15 297 4 204 260 30 100 chr1 177320691 177320791 -104872873 + MIR SINE MIR 156 248 -14 189 107 0 0 chr1 177320791 177320819 -104872845 + (TTA)n Simple_repeat Simple_repeat 2 29 0 2338 100 3 10 chr1 177320876 177321008 -104872656 + AluSc SINE Alu 1 132 -177 2438 88 0 13 chr1 177321008 177321313 -104872351 + AluSx SINE Alu 1 301 -11 2338 100 3 10 chr1 177321313 177321491 -104872173 + AluSc SINE Alu 132 309 0 961 161 122 0 chr1 177321784 177322027 -104871637 + MER58B DNA MER1_type 1 300 -41 333 47 0 0 chr1 177322060 177322103 -104871561 + (TG)n Simple_repeat Simple_repeat 2 44 0 320 301 72 0 chr1 177322103 177322186 -104871478 + L1MC4 LINE L1 6614 6702 -1340 2424 91 0 3 chr1 177322186 177322483 -104871181 - AluSq SINE Alu -17 296 1 1816 162 21 3 chr1 177322493 177322783 -104870881 - AluJb SINE Alu -17 295 1 208 240 0 0 chr1 177323601 177323651 -104870013 - L2 LINE L2 0 3313 3264 2400 100 0 0 chr1 177324868 177325178 -104868486 + AluSx SINE Alu 1 310 -2 264 299 181 8 chr1 177325533 177325660 -104868004 + MIR3 SINE MIR 11 159 -49 363 266 115 0 chr1 177325714 177325827 -104867837 + MIR3 SINE MIR 68 193 -15 210 317 24 37 chr1 177325993 177326075 -104867589 - MIR3 SINE MIR -30 178 98 344 253 46 11 chr1 177326094 177326181 -104867483 - L1MC4 LINE L1 -1341 6701 6612 * 347 215 138 31 chr1 177326136 177326266 -104867398 + L1MCa LINE L1 1922 2065 -4361 21 0 0 0 chr1 177326284 177326305 -104867359 + AT_rich Low_complexity Low_complexity 1 21 0 1966 153 10 0 chr1 177326305 177326599 -104867065 - AluJo SINE Alu -15 297 1 2037 22 0 342 chr1 177327391 177327575 -104866089 + MER47A DNA MER2_type 1 73 -2250 2300 113 0 16 chr1 177327575 177327711 -104865953 + AluSx SINE Alu 1 138 -174 2283 110 10 3 chr1 177327711 177328019 -104865645 + AluSg SINE Alu 1 310 0 2300 113 0 16 chr1 177328019 177328193 -104865471 + AluSx SINE Alu 138 306 -6 2037 22 0 342 chr1 177328193 177328411 -104865253 + MER47A DNA MER2_type 73 366 0 2454 112 0 0 chr1 177329171 177329483 -104864181 + AluSx SINE Alu 1 312 0 2187 119 3 13 chr1 177329485 177329787 -104863877 + AluSx SINE Alu 1 299 -13 2660 51 0 13 chr1 177329812 177330125 -104863539 + AluY SINE Alu 1 309 -2 447 130 0 0 chr1 177330130 177330199 -104863465 - AluSc SINE Alu -10 299 231 1353 101 0 0 chr1 177330199 177330368 -104863296 - AluY SINE Alu -142 169 1 279 93 0 0 chr1 177330460 177330503 -104863161 + Alu SINE Alu 255 297 -4 2361 93 0 0 chr1 177331586 177331877 -104861787 - AluSg SINE Alu -19 291 1 1865 172 0 11 chr1 177331877 177332162 -104861502 - AluJb SINE Alu -30 282 1 833 130 8 0 chr1 177332166 177332289 -104861375 - FRAM SINE Alu -2 174 51 977 170 41 113 chr1 177332781 177333099 -104860565 - AluSq SINE Alu -8 295 1 284 275 64 28 chr1 177333103 177333212 -104860452 + L2 LINE L2 3197 3309 -4 203 298 170 0 chr1 177334613 177334707 -104858957 + L2 LINE L2 3153 3262 -10 2347 104 7 3 chr1 177334952 177335261 -104858403 + AluSg SINE Alu 1 310 0 1003 125 5 85 chr1 177335910 177335931 -104857733 - L1MA4 LINE L1 -101 6199 6178 1886 133 42 3 chr1 177335931 177336216 -104857448 - AluJb SINE Alu -16 296 1 1003 125 5 85 chr1 177336216 177336359 -104857305 - L1MA4 LINE L1 -122 6178 6055 2237 108 3 0 chr1 177336359 177336646 -104857018 - AluSx SINE Alu -24 288 1 1003 125 5 85 chr1 177336646 177336704 -104856960 - L1MA4 LINE L1 -245 6055 5994 2357 93 6 6 chr1 177337030 177337341 -104856323 + AluSx SINE Alu 2 312 0 207 0 0 0 chr1 177337341 177337364 -104856300 + (TA)n Simple_repeat Simple_repeat 1 23 0 27 49 0 0 chr1 177337370 177337411 -104856253 + AT_rich Low_complexity Low_complexity 1 41 0 833 112 0 0 chr1 177337416 177337523 -104856141 - FLAM_C SINE Alu -26 117 11 1206 34 0 47 chr1 177337758 177337906 -104855758 - AluY SINE Alu -170 141 1 741 260 16 74 chr1 177338201 177338443 -104855221 + MIR SINE MIR 13 240 -22 311 236 87 56 chr1 177338434 177338562 -104855102 - MIR SINE MIR -66 142 35 * 990 183 72 30 chr1 177339627 177339862 -104853802 - MIR SINE MIR -4 258 14 239 218 18 0 chr1 177340588 177340643 -104853021 - MIR SINE MIR -116 146 91 316 132 53 40 chr1 177340713 177340789 -104852875 + MER91C DNA MER1_type 64 140 0 195 244 219 0 chr1 177341737 177341819 -104851845 + L2 LINE L2 3211 3310 -3 251 147 93 40 chr1 177342621 177342696 -104850968 - MIR SINE MIR -1 261 183 1372 132 134 48 chr1 177342697 177343006 -104850658 + Charlie1b DNA MER1_type 1 346 -2415 2070 121 3 0 chr1 177343006 177343296 -104850368 - AluSq SINE Alu -18 295 5 1372 132 134 48 chr1 177343296 177343343 -104850321 + Charlie1b DNA MER1_type 346 388 -135 307 148 0 0 chr1 177343444 177343499 -104850165 - AluSq SINE Alu -133 170 120 2194 110 10 0 chr1 177343554 177343862 -104849802 + AluY SINE Alu 1 311 0 423 264 38 31 chr1 177343967 177344126 -104849538 - MER5A DNA MER1_type -22 167 8 640 283 34 30 chr1 177344958 177345191 -104848473 - MIR SINE MIR -6 256 23 425 223 125 9 chr1 177345537 177345649 -104848015 - L2 LINE L2 0 3313 3189 338 356 68 64 chr1 177345798 177346124 -104847540 + L2 LINE L2 2895 3221 -51 2118 120 10 0 chr1 177348255 177348564 -104845100 - AluSx SINE Alu 0 312 1 365 189 264 0 chr1 177348565 177348671 -104844993 - MIR SINE MIR -114 148 15 958 154 39 0 chr1 177349678 177349834 -104843830 - AluSg/x SINE Alu -16 294 133 809 213 0 0 chr1 177350173 177350333 -104843331 + AluJb SINE Alu 137 296 -16 817 243 83 5 chr1 177350395 177350613 -104843051 - MIR SINE MIR 0 262 28 2259 94 3 3 chr1 177350716 177351023 -104842641 - AluSx SINE Alu -5 307 1 1610 61 0 0 chr1 177351025 177351221 -104842443 - AluY SINE Alu -19 292 97 741 56 0 0 chr1 177351298 177351387 -104842277 - AluY SINE Alu -221 90 2 1068 124 31 0 chr1 177351388 177351549 -104842115 - AluSq SINE Alu -14 299 134 2386 69 0 3 chr1 177351549 177351852 -104841812 - AluSp SINE Alu -11 302 1 2190 98 10 0 chr1 177352748 177353043 -104840621 - AluSg SINE Alu -12 298 1 219 154 0 0 chr1 177353569 177353608 -104840056 - MIR SINE MIR -6 256 218 245 164 295 0 chr1 177353659 177353720 -104839944 + MIR SINE MIR 2 80 -182 2279 98 0 0 chr1 177353735 177354040 -104839624 + AluSx SINE Alu 1 305 -7 646 256 68 30 chr1 177354041 177354103 -104839561 - LTR16A LTR ERVL 0 450 392 2177 64 0 58 chr1 177354103 177354414 -104839250 - AluSc SINE Alu -16 293 1 646 256 68 30 chr1 177354414 177354725 -104838939 - LTR16A LTR ERVL -58 392 9 582 245 61 12 chr1 177354732 177354895 -104838769 + MIR SINE MIR 76 246 -16 206 231 169 0 chr1 177354909 177354974 -104838690 - MIR SINE MIR -106 156 81 303 93 0 0 chr1 177355083 177355126 -104838538 + (CA)n Simple_repeat Simple_repeat 2 44 0 921 193 12 0 chr1 177355205 177355371 -104838293 - AluJb SINE Alu -11 301 134 1984 147 13 0 chr1 177355371 177355678 -104837986 - AluJb SINE Alu -1 311 1 426 278 9 9 chr1 177355713 177355828 -104837836 - MIR SINE MIR -67 141 27 457 219 35 9 chr1 177356124 177356238 -104837426 - MIR SINE MIR -70 192 76 212 384 9 0 chr1 177357281 177357393 -104836271 - MIR SINE MIR -3 259 147 1891 147 0 3 chr1 177357620 177357912 -104835752 + AluSx SINE Alu 1 291 -21 2286 79 10 3 chr1 177357917 177358221 -104835443 + AluSg SINE Alu 1 306 -4 205 281 34 45 chr1 177358346 177358435 -104835229 + MIR3 SINE MIR 100 187 -21 2167 102 0 0 chr1 177358731 177359016 -104834648 - AluSp SINE Alu -28 285 1 2186 118 0 0 chr1 177359648 177359952 -104833712 - AluSx SINE Alu -8 304 1 408 284 126 34 chr1 177360041 177360134 -104833530 + MIR SINE MIR 2 85 -177 2315 88 7 0 chr1 177360134 177360442 -104833222 - AluSg SINE Alu 0 310 1 408 284 126 34 chr1 177360442 177360587 -104833077 + MIR SINE MIR 85 262 0 182 250 36 0 chr1 177360775 177360831 -104832833 + MER5A DNA MER1_type 60 117 -72 1986 104 22 4 chr1 177361943 177362221 -104831443 - AluSx SINE Alu -16 296 14 2025 138 0 3 chr1 177362380 177362678 -104830986 - AluSx SINE Alu -15 297 1 33 43 0 0 chr1 177364591 177364638 -104829026 + AT_rich Low_complexity Low_complexity 1 47 0 182 36 0 36 chr1 177364914 177364942 -104828722 + (AGGGGG)n Simple_repeat Simple_repeat 6 32 0 22 35 0 0 chr1 177365332 177365361 -104828303 + AT_rich Low_complexity Low_complexity 1 29 0 208 268 16 68 chr1 177366674 177366828 -104826836 + GA-rich Low_complexity Low_complexity 4 237 0 210 118 0 0 chr1 177367855 177367889 -104825775 + (GGA)n Simple_repeat Simple_repeat 1 34 0 239 324 0 0 chr1 177369517 177369588 -104824076 + GA-rich Low_complexity Low_complexity 2 72 0 2307 80 0 7 chr1 177370139 177370440 -104823224 - AluSx SINE Alu -9 303 5 197 319 71 0 chr1 177370833 177370946 -104822718 + L3b LINE CR1 1263 1383 -200 264 231 16 16 chr1 177372606 177372727 -104820937 + (CGG)n Simple_repeat Simple_repeat 2 122 0 240 35 0 0 chr1 177372946 177372975 -104820689 + (GA)n Simple_repeat Simple_repeat 1 29 0 255 170 0 0 chr1 177372980 177373027 -104820637 + G-rich Low_complexity Low_complexity 3 49 0 1620 98 0 4 chr1 177373132 177373357 -104820307 + AluSq SINE Alu 70 293 -20 2322 60 13 10 chr1 177373428 177373730 -104819934 - AluY SINE Alu -8 303 1 221 167 0 0 chr1 177373778 177373820 -104819844 + A-rich Low_complexity Low_complexity 2 43 0 2094 132 157 5 chr1 177373866 177374236 -104819428 + MSTA LTR MaLR 1 426 -2 871 223 0 0 chr1 177374248 177374405 -104819259 - FRAM SINE Alu -9 157 1 2290 78 7 0 chr1 177374546 177374842 -104818822 - AluSg SINE Alu -12 298 1 2274 91 3 7 chr1 177374934 177375243 -104818421 - AluSc SINE Alu -1 308 1 198 238 49 107 chr1 177375278 177375400 -104818264 - L3b LINE CR1 -205 1378 1264 2312 57 7 7 chr1 177375619 177375916 -104817748 + AluSx SINE Alu 1 297 -15 1942 116 0 63 chr1 177375929 177376248 -104817416 + AluSx SINE Alu 3 301 -11 2159 98 0 3 chr1 177376583 177376879 -104816785 - AluSq SINE Alu -18 295 1 2023 95 3 3 chr1 177378759 177379081 -104814583 - AluSx SINE Alu 0 322 1 832 239 77 24 chr1 177379130 177379377 -104814287 + MIR SINE MIR 1 260 -2 477 301 37 0 chr1 177379409 177379545 -104814119 - L2 LINE L2 0 3313 3173 214 364 76 8 chr1 177379704 177379836 -104813828 + L2 LINE L2 2916 3056 -216 2287 94 0 0 chr1 177379905 177380202 -104813462 + AluSc SINE Alu 1 297 -12 807 226 59 5 chr1 177380393 177380597 -104813067 - L2 LINE L2 -274 3039 2825 269 115 19 19 chr1 177380813 177380865 -104812799 + MER112 DNA MER1_type 1 52 -208 2404 79 0 0 chr1 177380868 177381171 -104812493 + AluSg SINE Alu 1 303 -7 783 186 0 0 chr1 177381182 177381306 -104812358 + FLAM_C SINE Alu 2 125 -18 22 0 0 0 chr1 177381306 177381328 -104812336 + AT_rich Low_complexity Low_complexity 1 22 0 397 239 179 0 chr1 177381341 177381525 -104812139 + MER112 DNA MER1_type 37 253 -7 273 328 45 0 chr1 177381688 177381787 -104811877 - MIR SINE MIR -69 139 36 1225 133 79 149 chr1 177382824 177383140 -104810524 - AluJo SINE Alu -8 294 1 25 0 0 0 chr1 177384161 177384186 -104809478 + GC_rich Low_complexity Low_complexity 1 25 0 231 232 14 14 chr1 177384218 177384287 -104809377 + CT-rich Low_complexity Low_complexity 5 73 0 1937 85 89 20 chr1 177384862 177385155 -104808509 + AluSq SINE Alu 1 313 0 333 309 120 26 chr1 177385340 177385531 -104808133 + L3b LINE CR1 1321 1529 -54 249 258 70 94 chr1 177386839 177386967 -104806697 + L2 LINE L2 3141 3265 -7 258 247 104 0 chr1 177387028 177387105 -104806559 + MIR SINE MIR 68 152 -110 1932 135 17 0 chr1 177387115 177387411 -104806253 + AluSx SINE Alu 1 301 -11 187 239 22 0 chr1 177387419 177387465 -104806199 + L2 LINE L2 3255 3301 -12 195 42 0 0 chr1 177387527 177387551 -104806113 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 288 0 0 0 chr1 177387735 177387767 -104805897 + (TC)n Simple_repeat Simple_repeat 2 33 0 2114 88 14 7 chr1 177388443 177388740 -104804924 - AluSx SINE Alu -13 299 1 2212 99 3 10 chr1 177389028 177389340 -104804324 - AluSg SINE Alu 0 310 1 1646 185 4 0 chr1 177389344 177389652 -104804012 - AluJo SINE Alu 0 309 1 2354 78 3 0 chr1 177389661 177389968 -104803696 - AluSc SINE Alu -1 308 1 28 48 0 0 chr1 177390087 177390129 -104803535 + AT_rich Low_complexity Low_complexity 1 42 0 741 147 18 0 chr1 177390326 177390435 -104803229 + AluJo/FLAM SINE Alu 5 115 -197 2044 131 0 13 chr1 177390437 177390751 -104802913 - AluSg SINE Alu 0 310 1 1646 197 3 0 chr1 177390771 177391076 -104802588 - AluJb SINE Alu -6 306 1 285 29 0 0 chr1 177391077 177391111 -104802553 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1844 95 0 0 chr1 177391111 177391352 -104802312 - AluSg SINE Alu -28 282 42 432 113 0 0 chr1 177391352 177391423 -104802241 + AluSp/q SINE Alu 243 313 0 219 258 30 30 chr1 177391897 177391963 -104801701 - L2 LINE L2 -19 3253 3188 195 162 0 0 chr1 177392031 177392068 -104801596 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 230 163 82 0 chr1 177392073 177392122 -104801542 - MIR3 SINE MIR -45 163 111 570 266 70 19 chr1 177392220 177392434 -104801230 - MIR SINE MIR -11 251 27 2242 74 3 0 chr1 177393120 177393404 -104800260 + AluSp SINE Alu 1 309 0 217 0 0 0 chr1 177393404 177393428 -104800236 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 701 306 62 0 chr1 177393430 177393672 -104799992 - L2 LINE L2 -5 3308 3052 656 229 21 76 chr1 177393681 177393722 -104799942 + AluSg/x SINE Alu 86 128 -182 1997 134 0 0 chr1 177393722 177394012 -104799652 - AluSq SINE Alu -18 295 6 656 229 21 76 chr1 177394012 177394206 -104799458 + AluSg/x SINE Alu 128 308 -2 903 107 0 138 chr1 177394438 177394663 -104799001 + Tigger5 DNA MER2_type 2130 2323 0 2210 121 0 0 chr1 177395423 177395720 -104797944 + AluSx SINE Alu 1 297 -15 618 240 0 0 chr1 177395738 177395863 -104797801 + AluJo SINE Alu 1 125 -187 22 0 0 0 chr1 177395863 177395885 -104797779 + AT_rich Low_complexity Low_complexity 1 22 0 399 215 177 11 chr1 177395898 177396084 -104797580 + MER112 DNA MER1_type 37 253 -7 282 328 45 0 chr1 177396247 177396346 -104797318 - MIR SINE MIR -69 139 36 389 175 35 29 chr1 177397024 177397195 -104796469 + (CGCGG)n Simple_repeat Simple_repeat 1 172 0 * 407 188 28 44 chr1 177397117 177397298 -104796366 + G-rich Low_complexity Low_complexity 3 180 0 36 0 0 0 chr1 177397298 177397334 -104796330 + GC_rich Low_complexity Low_complexity 1 36 0 240 105 0 35 chr1 177397334 177397391 -104796273 + (CGGGGG)n Simple_repeat Simple_repeat 3 57 0 65 0 0 0 chr1 177397391 177397456 -104796208 + GC_rich Low_complexity Low_complexity 1 65 0 636 254 0 0 chr1 177397481 177397591 -104796073 - AluSq/x SINE Alu -203 110 1 839 172 49 49 chr1 177397607 177397770 -104795894 + AluJo SINE Alu 132 294 -18 2086 130 0 3 chr1 177397770 177398069 -104795595 + AluSx SINE Alu 1 298 -14 506 319 153 40 chr1 177398157 177398251 -104795413 + L2 LINE L2 2812 2894 -378 2102 99 13 16 chr1 177398251 177398563 -104795101 - AluSx SINE Alu -1 311 1 506 319 153 40 chr1 177398563 177398673 -104794991 + L2 LINE L2 2894 2990 -282 2052 134 3 0 chr1 177398673 177398979 -104794685 - AluJb SINE Alu -5 307 1 506 319 153 40 chr1 177398979 177399177 -104794487 + L2 LINE L2 2990 3261 -11 444 227 73 0 chr1 177399597 177399707 -104793957 + L2 LINE L2 2909 3026 -246 2088 95 7 40 chr1 177399718 177400022 -104793642 - AluSg SINE Alu -16 294 1 1115 125 12 0 chr1 177400140 177400300 -104793364 - AluSg/x SINE Alu -17 293 132 2069 89 17 26 chr1 177400300 177400602 -104793062 - AluSx SINE Alu -13 299 1 212 240 0 0 chr1 177400684 177400734 -104792930 + L2 LINE L2 3262 3311 -2 1536 59 0 82 chr1 177400809 177401028 -104792636 - AluSq SINE Alu -110 203 3 659 269 33 0 chr1 177401677 177401859 -104791805 + MIR SINE MIR 75 262 0 212 267 12 35 chr1 177401860 177401946 -104791718 + L2 LINE L2 3007 3090 -182 186 354 13 0 chr1 177401971 177402050 -104791614 + L2 LINE L2 3234 3313 0 484 245 115 65 chr1 177402793 177402993 -104790671 - MIR SINE MIR -17 245 36 267 103 0 0 chr1 177403305 177403344 -104790320 + (TG)n Simple_repeat Simple_repeat 1 39 0 519 320 20 0 chr1 177403577 177403727 -104789937 - MIR3 SINE MIR -26 182 30 230 295 200 0 chr1 177403970 177404065 -104789599 + MIR SINE MIR 80 193 -69 238 259 19 0 chr1 177404662 177404716 -104788948 + MIR SINE MIR 42 96 -112 456 298 99 7 chr1 177404720 177404861 -104788803 + MIR SINE MIR 1 154 -108 468 194 0 39 chr1 177404869 177404972 -104788692 + FLAM_A SINE Alu 27 125 -17 1803 127 65 14 chr1 177404976 177405268 -104788396 + AluSx SINE Alu 1 307 -5 305 286 50 67 chr1 177405268 177405387 -104788277 + MER5B DNA MER1_type 61 177 -1 194 314 19 57 chr1 177405499 177405604 -104788060 + MIR SINE MIR 74 174 -88 290 313 0 0 chr1 177405818 177405898 -104787766 + MIR SINE MIR 183 262 0 581 302 98 44 chr1 177406122 177406580 -104787084 - L2 LINE L2 -14 3258 2676 1542 189 6 29 chr1 177406580 177406893 -104786771 + AluJo SINE Alu 1 306 -6 581 302 98 44 chr1 177406893 177407112 -104786552 - L2 LINE L2 -596 2676 2470 246 261 43 14 chr1 177410483 177410552 -104783112 + MIR3 SINE MIR 132 202 -6 497 234 44 7 chr1 177410830 177410967 -104782697 + MER69 DNA AcHobo 6 147 -1079 278 189 0 137 chr1 177411024 177411059 -104782605 - MER81 DNA DNA -32 82 44 2183 54 0 54 chr1 177411059 177411372 -104782292 + AluY SINE Alu 1 296 -15 278 189 0 137 chr1 177411372 177411431 -104782233 - MER81 DNA DNA -70 44 1 279 275 33 0 chr1 177411835 177411926 -104781738 + C-rich Low_complexity Low_complexity 2 95 0 454 305 12 31 chr1 177412209 177412384 -104781280 + MIR SINE MIR 20 187 -65 287 277 48 0 chr1 177412624 177412707 -104780957 + MIR SINE MIR 65 151 -57 406 286 27 92 chr1 177412961 177413018 -104780646 + MIR SINE MIR 72 131 -131 1743 118 151 4 chr1 177413018 177413289 -104780375 - AluSx SINE Alu -1 311 1 406 286 27 92 chr1 177413289 177413416 -104780248 + MIR SINE MIR 131 244 -18 1804 112 63 31 chr1 177413714 177414000 -104779664 + AluSx SINE Alu 1 295 -17 514 243 85 69 chr1 177414001 177414034 -104779630 + MIR SINE MIR 61 92 -170 1104 225 9 0 chr1 177414034 177414247 -104779417 + MER20 DNA MER1_type 2 216 -3 514 243 85 69 chr1 177414247 177414402 -104779262 + MIR SINE MIR 92 252 -10 287 241 181 29 chr1 177414760 177414940 -104778724 + MIR SINE MIR 5 206 -56 189 107 0 0 chr1 177415004 177415032 -104778632 + (TATG)n Simple_repeat Simple_repeat 4 31 0 225 174 0 0 chr1 177415032 177415078 -104778586 + LTR66 LTR ERVL 394 439 -171 1682 158 24 24 chr1 177415080 177415372 -104778292 - AluJb SINE Alu -20 292 1 917 182 10 29 chr1 177415373 177415582 -104778082 + L2 LINE L2 3109 3313 0 315 218 115 0 chr1 177415676 177415754 -104777910 - MIR SINE MIR -115 147 61 824 160 8 8 chr1 177415785 177415916 -104777748 + AluJo/FLAM SINE Alu 1 131 -171 2134 110 0 0 chr1 177415916 177416206 -104777458 + AluSx SINE Alu 1 290 -22 217 227 206 41 chr1 177416214 177416311 -104777353 - L2 LINE L2 -23 3249 3137 2152 117 7 0 chr1 177416391 177416690 -104776974 + AluSq SINE Alu 1 301 -12 264 301 75 0 chr1 177416959 177417052 -104776612 - MIR SINE MIR -55 153 54 1344 184 137 0 chr1 177417357 177417613 -104776051 + AluJo SINE Alu 1 291 -21 1910 128 0 31 chr1 177418235 177418564 -104775100 + AluSx SINE Alu 1 320 0 207 301 0 44 chr1 177419537 177419650 -104774014 + CT-rich Low_complexity Low_complexity 4 111 0 24 32 0 0 chr1 177420540 177420571 -104773093 + GC_rich Low_complexity Low_complexity 1 31 0 232 232 0 18 chr1 177421533 177421589 -104772075 + (CACCC)n Simple_repeat Simple_repeat 5 59 0 2047 97 4 0 chr1 177421819 177422086 -104771578 - AluSp SINE Alu -45 268 1 1962 127 0 52 chr1 177422145 177422452 -104771212 - AluSx SINE Alu -21 291 1 2143 114 3 0 chr1 177422459 177422757 -104770907 - AluSq SINE Alu -14 299 1 1431 135 13 13 chr1 177422757 177422986 -104770678 - AluJb SINE Alu -18 294 66 1477 190 3 75 chr1 177423013 177423345 -104770319 - AluJo SINE Alu -3 309 2 1847 153 0 42 chr1 177424166 177424335 -104769329 - AluJb SINE Alu -10 302 150 2445 76 0 0 chr1 177424335 177424638 -104769026 - AluSc SINE Alu -6 303 1 1847 153 0 42 chr1 177424638 177424781 -104768883 - AluJb SINE Alu -162 150 3 228 360 64 24 chr1 177425417 177425542 -104768122 - MIR3 SINE MIR -73 135 6 1580 151 68 4 chr1 177425680 177425958 -104767706 + AluJo SINE Alu 12 307 -5 1726 152 18 0 chr1 177426266 177426543 -104767121 - AluJb SINE Alu -2 310 29 769 99 0 13 chr1 177427095 177427358 -104766306 + AluSx SINE Alu 1 311 -1 454 331 43 0 chr1 177427423 177427562 -104766102 + MIR3 SINE MIR 43 187 -21 2290 111 0 0 chr1 177429502 177429809 -104763855 - AluSg SINE Alu -3 307 1 2072 118 0 3 chr1 177430628 177430925 -104762739 + AluSx SINE Alu 1 296 -16 1738 118 74 20 chr1 177430929 177431250 -104762414 + AluSx SINE Alu 1 312 0 1260 119 0 0 chr1 177432732 177432908 -104760756 - AluSg/x SINE Alu -3 307 132 2064 144 3 0 chr1 177432909 177433208 -104760456 - AluSx SINE Alu -12 300 1 592 260 138 0 chr1 177433268 177433449 -104760215 + MIR SINE MIR 56 261 -1 432 277 7 29 chr1 177433892 177434029 -104759635 + MIR3 SINE MIR 68 201 -7 2325 73 0 0 chr1 177436212 177436525 -104757139 + AluY SINE Alu 1 313 0 1826 153 13 19 chr1 177436528 177436841 -104756823 + AluJb SINE Alu 1 311 -1 2050 124 7 10 chr1 177437110 177437409 -104756255 + AluSp SINE Alu 1 298 -15 2291 103 0 0 chr1 177437410 177437721 -104755943 + AluSx SINE Alu 1 311 -1 2360 103 0 0 chr1 177438050 177438361 -104755303 - AluSx SINE Alu 0 312 2 690 191 0 0 chr1 177438362 177438477 -104755187 - AluJo/FLAM SINE Alu -187 115 1 2334 100 3 0 chr1 177438513 177438823 -104754841 + AluY SINE Alu 1 311 0 184 393 27 44 chr1 177438857 177439040 -104754624 + L2 LINE L2 2779 2958 -356 1162 114 0 23 chr1 177439245 177439420 -104754244 - AluSg/x SINE Alu -18 294 124 201 309 62 21 chr1 177439494 177439591 -104754073 + MIR3 SINE MIR 97 197 -11 201 39 0 0 chr1 177440602 177440628 -104753036 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 182 274 65 0 chr1 177440737 177440799 -104752865 + MIR3 SINE MIR 104 169 -39 607 267 87 5 chr1 177441800 177441995 -104751669 + MIR SINE MIR 51 261 -1 186 43 0 0 chr1 177444805 177444828 -104748836 + (GA)n Simple_repeat Simple_repeat 1 23 0 405 0 0 0 chr1 177445383 177445428 -104748236 + (CA)n Simple_repeat Simple_repeat 2 46 0 226 344 56 0 chr1 177445649 177445739 -104747925 - L2 LINE L2 -1 3271 3177 234 300 33 50 chr1 177445837 177445957 -104747707 - L2 LINE L2 -35 3278 3161 532 162 10 20 chr1 177446945 177447044 -104746620 + FLAM_A SINE Alu 1 98 -44 1795 118 30 30 chr1 177447097 177447394 -104746270 + AluSg SINE Alu 5 301 -9 2298 60 0 0 chr1 177447413 177447733 -104745931 - AluY SINE Alu 0 320 1 38 0 0 0 chr1 177447733 177447771 -104745893 + AT_rich Low_complexity Low_complexity 1 38 0 1905 142 10 3 chr1 177447803 177448106 -104745558 - AluSx SINE Alu -7 305 1 1012 180 0 0 chr1 177448114 177448286 -104745378 - AluSx SINE Alu -5 305 134 230 157 0 20 chr1 177448289 177448340 -104745324 + T-rich Low_complexity Low_complexity 4 53 0 901 144 0 0 chr1 177448340 177448472 -104745192 - AluSx SINE Alu -179 133 2 762 155 0 31 chr1 177448494 177448623 -104745041 - FLAM_A SINE Alu 0 142 18 835 156 0 22 chr1 177448657 177448792 -104744872 + FLAM_C SINE Alu 1 132 -1 606 96 12 0 chr1 177448818 177448901 -104744763 + AluSg1 SINE Alu 41 124 -185 191 149 64 0 chr1 177448936 177448983 -104744681 + L2 LINE L2 1278 1327 -1987 342 301 28 21 chr1 177448985 177449128 -104744536 + L2 LINE L2 1814 1957 -1357 2619 247 107 21 chr1 177449148 177449582 -104744082 + L2 LINE L2 2070 2465 -848 2055 99 3 3 chr1 177449582 177449901 -104743763 + AluSx SINE Alu 1 319 0 2619 247 107 21 chr1 177449901 177450376 -104743288 + L2 LINE L2 2465 3057 -256 919 183 6 6 chr1 177450383 177450552 -104743112 - AluJb SINE Alu -7 305 137 1864 126 7 0 chr1 177450566 177450843 -104742821 - AluSx SINE Alu -9 303 25 493 236 101 74 chr1 177450859 177451117 -104742547 + L2 LINE L2 3049 3313 0 714 151 158 55 chr1 177451150 177451296 -104742368 - FAM SINE Alu -15 170 10 269 284 59 20 chr1 177451369 177451471 -104742193 - MIR SINE MIR -76 186 81 197 326 11 0 chr1 177451713 177451802 -104741862 - L2 LINE L2 -508 2806 2717 269 351 97 0 chr1 177453849 177453983 -104739681 - MIR3 SINE MIR -61 147 1 2406 80 3 0 chr1 177454012 177454324 -104739340 - AluSp SINE Alu 0 313 1 186 306 108 18 chr1 177454336 177454447 -104739217 - MIR3 SINE MIR -54 154 34 210 222 0 0 chr1 177455205 177455250 -104738414 + G-rich Low_complexity Low_complexity 3 47 0 216 300 54 46 chr1 177456227 177456357 -104737307 + MIR3 SINE MIR 74 204 -4 1112 171 11 0 chr1 177456359 177456535 -104737129 - MER45A DNA AcHobo 0 178 1 2131 112 0 16 chr1 177456773 177457087 -104736577 + AluSq SINE Alu 1 309 -4 290 222 22 56 chr1 177457328 177457418 -104736246 + MIR SINE MIR 102 188 -74 185 293 0 0 chr1 177457949 177458007 -104735657 + L3b LINE CR1 1342 1399 -184 25 0 0 0 chr1 177458388 177458413 -104735251 + AT_rich Low_complexity Low_complexity 1 25 0 266 318 73 9 chr1 177460632 177460742 -104732922 - L2 LINE L2 -49 3223 3107 2092 94 42 0 chr1 177461968 177462254 -104731410 - AluSx SINE Alu -14 298 1 2000 123 10 0 chr1 177462414 177462706 -104730958 - AluSx SINE Alu -17 295 1 195 254 111 16 chr1 177462810 177462873 -104730791 + MER5A DNA MER1_type 8 76 -113 241 347 21 11 chr1 177463010 177463105 -104730559 - MIR SINE MIR -161 101 6 648 213 31 0 chr1 177464144 177464271 -104729393 + FLAM_A SINE Alu 2 132 -1 1860 139 0 26 chr1 177464275 177464577 -104729087 + AluSx SINE Alu 10 303 -9 1542 143 93 11 chr1 177464849 177464973 -104728691 + AluJb SINE Alu 1 113 -199 184 29 29 29 chr1 177464973 177465007 -104728657 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1542 143 93 11 chr1 177465007 177465161 -104728503 + AluJb SINE Alu 113 302 -10 193 347 69 0 chr1 177465224 177465368 -104728296 - L2 LINE L2 -229 3043 2890 283 301 75 15 chr1 177465835 177465968 -104727696 - L2 LINE L2 -4 3309 3169 191 152 22 0 chr1 177466375 177466421 -104727243 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 215 229 31 31 chr1 177466437 177466533 -104727131 + (CGGGG)n Simple_repeat Simple_repeat 4 99 0 250 294 87 16 chr1 177466827 177466953 -104726711 - MIR SINE MIR -31 231 97 2254 93 0 0 chr1 177467203 177467504 -104726160 + AluSc SINE Alu 1 301 -8 2374 84 3 0 chr1 177468662 177468972 -104724692 + AluSx SINE Alu 1 311 -1 1736 154 22 22 chr1 177468977 177469289 -104724375 + AluJo SINE Alu 1 312 0 850 220 62 62 chr1 177469345 177469618 -104724046 - HAL1 LINE L1 -10 2497 2225 735 259 25 0 chr1 177469622 177469780 -104723884 - MER63A DNA MER1_type 0 210 49 2605 201 58 117 chr1 177469809 177470011 -104723653 - HAL1 LINE L1 -282 2225 2013 2231 115 0 0 chr1 177470011 177470323 -104723341 - AluSx SINE Alu 0 312 1 2605 201 58 117 chr1 177470323 177470898 -104722766 - HAL1 LINE L1 -494 2013 1473 269 186 0 0 chr1 177470898 177470941 -104722723 - MER66A LTR ERV1 -140 338 296 2605 201 58 117 chr1 177470941 177471121 -104722543 - HAL1 LINE L1 -1034 1473 1284 2046 138 0 0 chr1 177471125 177471429 -104722235 - AluSx SINE Alu -8 304 1 883 143 0 0 chr1 177471432 177471565 -104722099 - AluJb SINE Alu -179 133 1 504 186 97 9 chr1 177471575 177471688 -104721976 - L2 LINE L2 -5 3308 3186 433 221 38 15 chr1 177471706 177471837 -104721827 - HAL1 LINE L1 -1287 1220 1087 2246 115 0 0 chr1 177471869 177472181 -104721483 + AluSx SINE Alu 1 312 0 1093 165 119 0 chr1 177472201 177472395 -104721269 - AluJo SINE Alu -90 222 6 1863 144 47 3 chr1 177472429 177472727 -104720937 + AluJb SINE Alu 1 311 -1 502 172 231 41 chr1 177472745 177472914 -104720750 - L1MC5 LINE L1 -456 7505 7305 246 261 6 42 chr1 177473006 177473131 -104720533 - HAL1 LINE L1 -1468 1039 911 2283 102 0 9 chr1 177473131 177473446 -104720218 - AluSx SINE Alu 0 312 1 2244 88 0 7 chr1 177473449 177473746 -104719918 - AluSx SINE Alu -17 295 1 246 261 6 42 chr1 177473746 177473781 -104719883 - HAL1 LINE L1 -1598 909 881 * 2208 236 70 64 chr1 177473764 177474492 -104719172 - HAL1 LINE L1 -1572 935 200 186 43 0 0 chr1 177474492 177474515 -104719149 + (TC)n Simple_repeat Simple_repeat 2 24 0 2208 236 70 64 chr1 177474515 177474626 -104719038 - HAL1 LINE L1 -2307 200 91 2448 57 0 16 chr1 177474626 177474942 -104718722 - AluY SINE Alu 0 311 1 2089 105 3 0 chr1 177474968 177475254 -104718410 + AluSc SINE Alu 1 287 -22 1612 140 9 81 chr1 177475265 177475406 -104718258 + AluJb SINE Alu 3 152 -160 2150 90 13 0 chr1 177475406 177475707 -104717957 + AluSq SINE Alu 3 307 -6 2100 64 11 11 chr1 177475714 177475994 -104717670 + AluY SINE Alu 20 299 -12 1612 140 9 81 chr1 177475994 177476166 -104717498 + AluJb SINE Alu 158 301 -11 745 142 0 39 chr1 177476174 177476301 -104717363 + FLAM_C SINE Alu 22 143 0 391 248 86 17 chr1 177476353 177476470 -104717194 - MIR SINE MIR -95 167 43 519 285 13 7 chr1 177476515 177476666 -104716998 - MIR3 SINE MIR -3 205 54 382 217 24 12 chr1 177476708 177476791 -104716873 - L2 LINE L2 -2 3311 3228 1114 113 6 18 chr1 177476798 177476966 -104716698 - AluSq SINE Alu -14 299 134 2118 102 0 3 chr1 177476966 177476978 -104716686 - AluY SINE Alu -9 302 291 276 53 0 0 chr1 177476978 177477016 -104716648 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 2118 102 0 3 chr1 177477016 177477306 -104716358 - AluY SINE Alu -20 291 1 2105 93 7 0 chr1 177477307 177477638 -104716026 - AluSx SINE Alu 0 333 1 639 303 71 0 chr1 177477730 177477928 -104715736 - MIR SINE MIR 0 262 51 608 222 22 7 chr1 177478314 177478449 -104715215 - L2 LINE L2 0 3272 3136 463 356 38 48 chr1 177478447 177479050 -104714614 - L2 LINE L2 -1402 1912 1315 * 2140 98 3 7 chr1 177479050 177479345 -104714319 + AluSq SINE Alu 1 294 -19 463 356 38 48 chr1 177479345 177479406 -104714258 - L2 LINE L2 -1999 1315 1255 401 309 123 12 chr1 177479458 177479710 -104713954 - L2 LINE L2 0 3313 3034 210 305 112 27 chr1 177479696 177479883 -104713781 - L2 LINE L2 -2065 1249 1047 * 242 351 18 24 chr1 177481065 177481219 -104712445 + (TTGGGG)n Simple_repeat Simple_repeat 6 160 -9 1491 151 28 82 chr1 177481219 177481536 -104712128 + AluJb SINE Alu 1 300 -12 242 351 18 24 chr1 177481536 177481546 -104712118 + (TTGGGG)n Simple_repeat Simple_repeat 160 169 0 23 0 0 0 chr1 177482938 177482961 -104710703 + AT_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr1 177484062 177484091 -104709573 + (A)n Simple_repeat Simple_repeat 1 29 0 1614 143 0 4 chr1 177484091 177484336 -104709328 + AluSq SINE Alu 1 244 -69 492 18 0 0 chr1 177484336 177484393 -104709271 + (TG)n Simple_repeat Simple_repeat 2 58 0 419 78 0 0 chr1 177484394 177484445 -104709219 - AluSq SINE Alu -24 286 236 8078 55 1 0 chr1 177484445 177485413 -104708251 + LTR5 LTR ERVK 1 969 0 1742 111 0 0 chr1 177485413 177485656 -104708008 - AluSq SINE Alu -70 243 1 1590 160 24 14 chr1 177485669 177485957 -104707707 - AluJo SINE Alu -17 295 5 856 180 12 12 chr1 177486016 177486183 -104707481 + FRAM SINE Alu 1 40 0 649 196 54 49 chr1 177486183 177486312 -104707352 - Tigger2a DNA MER2_type -2523 185 53 2368 78 0 0 chr1 177486312 177486607 -104707057 + AluSx SINE Alu 1 295 -17 649 196 54 49 chr1 177486607 177486661 -104707003 - Tigger2a DNA MER2_type -2655 53 1 7710 67 9 1 chr1 177486683 177487644 -104706020 + LTR5 LTR ERVK 1 969 0 1503 172 7 28 chr1 177487729 177487893 -104705771 - AluJo SINE Alu -17 295 138 2208 88 0 10 chr1 177487893 177488216 -104705448 - AluSp SINE Alu 0 313 3 1503 172 7 28 chr1 177488216 177488341 -104705323 - AluJo SINE Alu -174 138 12 1957 124 20 10 chr1 177488351 177488650 -104705014 - AluSx SINE Alu -10 302 1 455 138 149 11 chr1 177488651 177488738 -104704926 - FLAM_C SINE Alu -9 134 36 2043 100 55 0 chr1 177488743 177488920 -104704744 - AluSg SINE Alu -4 306 105 432 0 0 0 chr1 177488920 177488968 -104704696 + (TG)n Simple_repeat Simple_repeat 1 48 0 2043 100 55 0 chr1 177488968 177489080 -104704584 - AluSg SINE Alu -205 105 1 1979 158 62 17 chr1 177489105 177489220 -104704444 - LTR22 LTR ERVK 0 458 350 2226 78 3 26 chr1 177489220 177489526 -104704138 - AluY SINE Alu -12 299 1 1979 158 62 17 chr1 177489526 177489847 -104703817 - LTR22 LTR ERVK -108 350 1 18971 94 16 15 chr1 177489847 177492633 -104701031 - HERVK22 LTR ERVK 0 6837 2672 2709 16 0 3 chr1 177492633 177492945 -104700719 + AluYa5 SINE Alu 1 311 0 18971 94 16 15 chr1 177492945 177493290 -104700374 - HERVK22 LTR ERVK -4165 2672 2329 5273 108 33 13 chr1 177493287 177493627 -104700037 - HERVK22 LTR ERVK -5932 905 574 * 2383 77 10 3 chr1 177493627 177493925 -104699739 + AluSp SINE Alu 1 300 -13 5273 108 33 13 chr1 177493925 177494468 -104699196 - HERVK22 LTR ERVK -6263 574 1 1915 198 55 10 chr1 177494468 177494936 -104698728 - LTR22 LTR ERVK 0 458 1 216 173 67 19 chr1 177494936 177495040 -104698624 + (TA)n Simple_repeat Simple_repeat 1 109 0 2292 130 0 0 chr1 177495041 177495342 -104698322 - AluSx SINE Alu -11 301 1 1663 146 26 54 chr1 177495359 177495638 -104698026 - MLT2C1 LTR ERVL -58 339 70 2157 121 3 26 chr1 177495638 177495943 -104697721 - AluSx SINE Alu -14 298 1 1663 146 26 54 chr1 177495943 177496012 -104697652 - MLT2C1 LTR ERVL -327 70 1 210 267 198 12 chr1 177496013 177496099 -104697565 - L2 LINE L2 -974 2340 2239 4336 146 38 32 chr1 177496099 177496114 -104697550 - L1MB5 LINE L1 0 6174 6161 2297 119 0 3 chr1 177496114 177496425 -104697239 + AluSx SINE Alu 1 310 -2 4336 146 38 32 chr1 177496425 177497283 -104696381 - L1MB5 LINE L1 -13 6161 5296 7513 44 48 2 chr1 177497387 177498335 -104695329 + LTR13 LTR ERVK 1 991 -16 870 239 10 0 chr1 177498473 177498670 -104694994 + AluJo SINE Alu 114 312 0 1922 103 62 10 chr1 177498694 177498984 -104694680 - AluSx SINE Alu -7 305 1 437 233 0 0 chr1 177500118 177500208 -104693456 - MER5A DNA MER1_type -83 106 17 2499 43 0 0 chr1 177500327 177500605 -104693059 - AluY SINE Alu -13 298 21 272 301 93 20 chr1 177500861 177500988 -104692676 - MIR SINE MIR -66 142 16 367 235 94 49 chr1 177502146 177502317 -104691347 + MIR SINE MIR 21 198 -64 2554 57 3 0 chr1 177502699 177502997 -104690667 + AluY SINE Alu 1 299 -12 1908 163 7 7 chr1 177503679 177503973 -104689691 - AluJb SINE Alu -18 294 1 2288 99 0 0 chr1 177506054 177506346 -104687318 - AluSg SINE Alu -8 302 11 383 216 112 16 chr1 177506409 177506534 -104687130 - L1ME LINE L1 -425 5696 5560 303 320 108 50 chr1 177506688 177506966 -104686698 - HAL1 LINE L1 -1352 1155 862 187 335 181 28 chr1 177507191 177507621 -104686043 + L2 LINE L2 2301 2796 -518 309 219 62 21 chr1 177507995 177508091 -104685573 - MIR SINE MIR -6 256 157 * 428 264 0 33 chr1 177508083 177508204 -104685460 + L2 LINE L2 3196 3312 -1 * 589 322 114 17 chr1 177508186 177508745 -104684919 + L2 LINE L2 2694 3305 -8 183 80 0 0 chr1 177508880 177508905 -104684759 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 2525 81 0 3 chr1 177508917 177509226 -104684438 - AluY SINE Alu -3 308 1 2374 101 3 0 chr1 177509227 177509525 -104684139 - AluSp SINE Alu -10 303 5 2044 119 49 3 chr1 177509711 177509996 -104683668 - AluSq SINE Alu -15 298 1 2490 68 7 0 chr1 177510269 177510564 -104683100 - AluSp SINE Alu -16 297 1 1211 244 46 72 chr1 177510624 177511127 -104682537 + L2 LINE L2 2824 3313 0 22 35 0 0 chr1 177511307 177511336 -104682328 + AT_rich Low_complexity Low_complexity 1 29 0 2414 106 3 0 chr1 177511449 177511760 -104681904 - AluSx SINE Alu 0 312 1 2019 140 0 3 chr1 177511764 177512056 -104681608 - AluJb SINE Alu -21 291 1 180 354 131 0 chr1 177512156 177512255 -104681409 + L3b LINE CR1 1346 1457 -126 1769 164 6 50 chr1 177512278 177512401 -104681263 + AluJo SINE Alu 1 128 -184 2599 53 0 7 chr1 177512401 177512700 -104680964 - AluY SINE Alu -13 298 2 1769 164 6 50 chr1 177512700 177512899 -104680765 + AluJo SINE Alu 128 309 -3 2321 105 7 0 chr1 177513409 177513714 -104679950 + AluSx SINE Alu 1 307 -5 217 250 67 0 chr1 177514955 177515015 -104678649 - MIR3 SINE MIR 0 208 145 732 268 40 4 chr1 177515078 177515328 -104678336 - MIR SINE MIR 0 262 4 405 0 0 0 chr1 177516279 177516324 -104677340 + (TG)n Simple_repeat Simple_repeat 2 46 0 1072 134 43 0 chr1 177518689 177518853 -104674811 - AluJb SINE Alu -7 305 135 584 226 151 11 chr1 177518860 177519046 -104674618 + MIR SINE MIR 50 261 -1 2359 90 6 13 chr1 177519124 177519436 -104674228 - AluSg SINE Alu 0 310 1 206 311 68 48 chr1 177519704 177519807 -104673857 - L2 LINE L2 -60 3253 3149 939 205 0 0 chr1 177519829 177519990 -104673674 + FRAM SINE Alu 11 171 -5 390 263 121 45 chr1 177520010 177520082 -104673582 - L2 LINE L2 -247 3066 3001 2068 118 11 3 chr1 177520082 177520396 -104673268 - AluSx SINE Alu 0 318 3 390 263 121 45 chr1 177520396 177520603 -104673061 - L2 LINE L2 -312 3001 2777 747 169 0 0 chr1 177520762 177520914 -104672750 - FLAM_C SINE Alu 0 152 1 1875 128 0 0 chr1 177520916 177521167 -104672497 - AluSx SINE Alu -17 295 45 278 263 50 106 chr1 177521167 177521327 -104672337 - L2 LINE L2 0 3313 3163 2317 120 0 0 chr1 177521331 177521639 -104672025 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr1 177521918 177521940 -104671724 + GC_rich Low_complexity Low_complexity 1 22 0 3141 18 0 0 chr1 177522088 177522468 -104671196 + L1PA2 LINE L1 5775 6154 -1 2317 112 0 7 chr1 177522666 177522971 -104670693 + AluSx SINE Alu 1 303 -9 354 279 46 57 chr1 177523238 177523487 -104670177 - L1ME LINE L1 -649 5513 5267 2455 72 3 13 chr1 177523722 177524029 -104669635 + AluSc SINE Alu 1 304 -5 2346 85 10 10 chr1 177524130 177524435 -104669229 - AluSx SINE Alu -1 311 7 1224 192 129 15 chr1 177524806 177524975 -104668689 - AluJb SINE Alu 0 302 154 1512 153 0 0 chr1 177524975 177525191 -104668473 - AluJb SINE Alu -15 297 82 2451 64 0 3 chr1 177525191 177525486 -104668178 - AluY SINE Alu -16 295 1 1224 192 129 15 chr1 177525486 177525586 -104668078 - AluJb SINE Alu -147 155 1 782 167 0 0 chr1 177525610 177525736 -104667928 - FLAM_C SINE Alu -7 126 1 220 288 54 113 chr1 177525770 177525847 -104667817 + L2 LINE L2 1862 1942 -1372 207 69 0 0 chr1 177525847 177525876 -104667788 + (TG)n Simple_repeat Simple_repeat 2 30 0 2323 89 17 0 chr1 177525883 177526174 -104667490 - AluSq SINE Alu -17 296 1 220 288 54 113 chr1 177526174 177526328 -104667336 + L2 LINE L2 1948 2087 -1227 513 281 215 23 chr1 177526456 177526847 -104666817 + L2 LINE L2 2845 3310 -3 467 332 91 18 chr1 177526864 177527247 -104666417 + L2 LINE L2 2260 2670 -644 2307 104 3 0 chr1 177527606 177527904 -104665760 - AluSp SINE Alu -14 299 1 1015 36 0 0 chr1 177527914 177528024 -104665640 - AluSq/x SINE Alu -188 125 16 182 371 31 0 chr1 177528489 177528586 -104665078 + L2 LINE L2 2657 2756 -558 819 198 99 38 chr1 177528645 177528857 -104664807 + MIR SINE MIR 38 262 0 249 196 0 0 chr1 177528867 177528918 -104664746 + (CA)n Simple_repeat Simple_repeat 1 51 0 259 221 116 42 chr1 177529091 177529186 -104664478 + L2 LINE L2 3208 3309 -4 1049 155 113 13 chr1 177529392 177529631 -104664033 - L1MA6 LINE L1 -1 6299 6037 2440 61 40 0 chr1 177529717 177530013 -104663651 + AluY SINE Alu 1 308 -3 2308 95 7 0 chr1 177530123 177530418 -104663246 - AluSx SINE Alu -11 301 5 180 0 0 0 chr1 177530505 177530525 -104663139 + (T)n Simple_repeat Simple_repeat 1 20 0 1478 79 9 5 chr1 177530525 177530740 -104662924 - L1PB1 LINE L1 0 6151 5936 26 23 0 23 chr1 177531056 177531071 -104662593 + AT_rich Low_complexity Low_complexity 1 15 -28 2221 138 0 0 chr1 177531071 177531375 -104662289 - AluSx SINE Alu -6 306 3 26 23 0 23 chr1 177531375 177531403 -104662261 + AT_rich Low_complexity Low_complexity 15 43 0 584 116 12 0 chr1 177531403 177531489 -104662175 - FLAM SINE Alu -18 125 39 726 260 25 10 chr1 177531828 177532024 -104661640 - MIR SINE MIR -17 245 47 1933 98 0 0 chr1 177532444 177532680 -104660984 + AluSq SINE Alu 1 236 -77 2063 130 0 26 chr1 177532686 177533020 -104660644 - AluSx SINE Alu 0 312 1 835 134 0 0 chr1 177533025 177533152 -104660512 - FLAM_C SINE Alu -5 128 2 2293 91 0 66 chr1 177533157 177533477 -104660187 - AluSq SINE Alu -13 300 2 288 0 0 0 chr1 177533479 177533511 -104660153 + (T)n Simple_repeat Simple_repeat 1 32 0 2458 78 0 7 chr1 177534123 177534430 -104659234 - AluSc SINE Alu -4 305 1 1644 205 89 12 chr1 177534525 177534784 -104658880 + MER63B DNA MER1_type 1 304 -758 2440 84 0 7 chr1 177534784 177535093 -104658571 - AluSp SINE Alu -4 309 3 1644 205 89 12 chr1 177535093 177535238 -104658426 + MER63B DNA MER1_type 304 436 0 403 260 63 24 chr1 177535647 177535774 -104657890 + L2 LINE L2 3132 3263 -9 1691 151 0 94 chr1 177536002 177536159 -104657505 + AluJo SINE Alu 1 112 -200 2601 58 0 7 chr1 177536159 177536469 -104657195 + AluY SINE Alu 4 311 0 1691 151 0 94 chr1 177536469 177536642 -104657022 + AluJo SINE Alu 112 300 -12 2279 93 10 0 chr1 177536655 177536944 -104656720 + AluSx SINE Alu 13 304 -8 339 222 14 0 chr1 177536947 177537019 -104656645 - MLT1L LTR MaLR -53 562 490 345 152 0 15 chr1 177537199 177537265 -104656399 + MER5A DNA MER1_type 1 65 -124 835 184 7 0 chr1 177537923 177538059 -104655605 - FRAM SINE Alu -17 159 23 1153 168 0 0 chr1 177538130 177538309 -104655355 - AluJ SINE Alu 0 312 134 29 0 0 0 chr1 177538313 177538342 -104655322 + AT_rich Low_complexity Low_complexity 1 29 0 2039 134 3 16 chr1 177538374 177538680 -104654984 - AluSx SINE Alu -10 302 1 810 153 0 0 chr1 177539005 177539136 -104654528 - AluJ SINE Alu -169 133 3 734 144 0 61 chr1 177539176 177539308 -104654356 + FLAM_A SINE Alu 1 124 -9 471 254 23 54 chr1 177539679 177539725 -104653939 - L2 LINE L2 0 3313 3267 2359 114 0 0 chr1 177539725 177540031 -104653633 - AluSx SINE Alu -6 306 1 471 254 23 54 chr1 177540031 177540114 -104653550 - L2 LINE L2 -46 3267 3188 2351 83 3 13 chr1 177540345 177540646 -104653018 - AluSq SINE Alu -15 298 1 2618 66 0 0 chr1 177540658 177540963 -104652701 - AluY SINE Alu -6 305 1 221 349 53 15 chr1 177541932 177542064 -104651600 - MIR3 SINE MIR -60 148 12 1045 110 6 17 chr1 177542138 177542311 -104651353 - L1MA4A LINE L1 -5 6298 6128 640 206 0 8 chr1 177542312 177542438 -104651226 - FLAM_A SINE Alu -12 130 6 881 148 87 20 chr1 177542442 177542638 -104651026 - L1MA4A LINE L1 -159 6144 5936 2235 138 0 0 chr1 177542657 177542969 -104650695 - AluSx SINE Alu 0 312 1 1865 112 11 43 chr1 177542990 177543266 -104650398 - AluSx SINE Alu -21 291 25 1113 121 25 15 chr1 177543266 177543464 -104650200 - L1 LINE L1 -1259 4887 4688 434 305 117 28 chr1 177543464 177543746 -104649918 - MARNA DNA Mariner -123 463 157 210 259 190 17 chr1 177544213 177544329 -104649335 + MIR3 SINE MIR 70 205 -3 2322 72 3 0 chr1 177545526 177545817 -104647847 + AluSq SINE Alu 1 292 -21 1275 91 0 0 chr1 177545820 177545985 -104647679 + AluSg/x SINE Alu 130 294 -18 201 74 0 0 chr1 177553745 177553772 -104639892 + (C)n Simple_repeat Simple_repeat 1 27 0 2303 60 17 10 chr1 177553830 177554128 -104639536 - AluY SINE Alu -11 300 1 310 315 51 34 chr1 177557895 177558117 -104635547 - MIR SINE MIR -31 231 3 736 301 193 34 chr1 177559017 177559602 -104634062 + L2 LINE L2 2124 2801 -513 1963 145 0 3 chr1 177559656 177559967 -104633697 - AluJb SINE Alu -2 310 1 1955 124 0 3 chr1 177560030 177560352 -104633312 + AluSx SINE Alu 1 321 0 841 77 137 0 chr1 177560362 177560479 -104633185 + AluSg SINE Alu 1 133 -177 2199 113 6 0 chr1 177560481 177560792 -104632872 + AluSq SINE Alu 1 313 0 29 0 0 0 chr1 177560792 177560821 -104632843 + AT_rich Low_complexity Low_complexity 1 29 0 1757 152 0 57 chr1 177560826 177561142 -104632522 + AluJo SINE Alu 1 298 -14 1039 204 25 0 chr1 177561144 177561384 -104632280 + L1MD3 LINE L1 7575 7820 -175 260 220 17 0 chr1 177561411 177561470 -104632194 + MER20 DNA MER1_type 156 215 -4 606 150 20 0 chr1 177561527 177561627 -104632037 - AluJb SINE Alu 0 312 211 513 294 70 21 chr1 177562071 177562137 -104631527 + MIR SINE MIR 56 117 -145 2257 112 0 0 chr1 177562137 177562449 -104631215 - AluSx SINE Alu 0 312 1 513 294 70 21 chr1 177562449 177562569 -104631095 + MIR SINE MIR 117 251 -11 444 205 68 43 chr1 177563201 177563318 -104630346 + L2 LINE L2 3190 3309 -4 553 291 52 19 chr1 177563487 177563700 -104629964 - MIR SINE MIR -10 252 33 2244 92 3 0 chr1 177563738 177564032 -104629632 + AluSc SINE Alu 1 295 -14 259 148 49 16 chr1 177564649 177564710 -104628954 + MIR3 SINE MIR 15 77 -131 1805 150 3 10 chr1 177564760 177565054 -104628610 - AluJo SINE Alu -20 292 1 230 246 43 14 chr1 177565118 177565187 -104628477 + MER101B LTR ERV1 59 129 -441 226 276 0 0 chr1 177565266 177565324 -104628340 + MIR3 SINE MIR 149 206 -2 1171 140 14 54 chr1 177566770 177566828 -104626836 + AluJb SINE Alu 87 146 -166 2333 91 0 7 chr1 177566828 177567136 -104626528 + AluSq SINE Alu 1 306 -7 1171 140 14 54 chr1 177567136 177567299 -104626365 + AluJb SINE Alu 146 299 -13 647 98 0 0 chr1 177567312 177567394 -104626270 + AluS SINE Alu 13 94 -219 2171 72 69 0 chr1 177567437 177567728 -104625936 + AluY SINE Alu 1 311 0 201 238 0 0 chr1 177569089 177569131 -104624533 - L2 LINE L2 -4 3309 3268 2541 65 0 0 chr1 177569210 177569518 -104624146 + AluSg SINE Alu 1 308 -2 707 338 17 53 chr1 177569605 177569966 -104623698 - L2 LINE L2 0 3272 2925 2174 110 0 0 chr1 177569966 177570258 -104623406 + AluSx SINE Alu 1 292 -20 333 0 0 0 chr1 177570259 177570296 -104623368 + (CA)n Simple_repeat Simple_repeat 2 38 0 966 165 6 6 chr1 177570298 177570462 -104623202 + AluSg/x SINE Alu 136 299 -13 844 68 30 38 chr1 177572021 177572154 -104621510 - FLAM_C SINE Alu -2 141 10 372 219 60 144 chr1 177573961 177574176 -104619488 - MIR SINE MIR -1 261 65 2155 107 3 0 chr1 177574194 177574492 -104619172 - AluSx SINE Alu -13 299 1 752 186 54 0 chr1 177574500 177574629 -104619035 - FLAM_C SINE Alu -6 137 2 1917 94 0 64 chr1 177574667 177574816 -104618848 + AluSg SINE Alu 1 122 -177 2361 74 0 0 chr1 177574816 177575113 -104618551 + AluY SINE Alu 1 297 -14 1917 94 0 64 chr1 177575113 177575281 -104618383 + AluSg SINE Alu 122 299 0 559 231 217 47 chr1 177575379 177575591 -104618073 + MLT1H1 LTR MaLR 1 248 -342 476 235 8 38 chr1 177575645 177575777 -104617887 + MLT1H1 LTR MaLR 359 486 -69 2367 82 3 0 chr1 177575948 177576254 -104617410 + AluSp SINE Alu 1 307 -6 2125 101 0 58 chr1 177576789 177577115 -104616549 - AluSx SINE Alu -5 307 1 2114 62 41 17 chr1 177577796 177578087 -104615577 - AluY SINE Alu -13 298 1 968 107 15 0 chr1 177578945 177579076 -104614588 - FLAM_A SINE Alu 0 133 1 197 156 0 47 chr1 177580354 177580418 -104613246 + A-rich Low_complexity Low_complexity 1 61 0 620 197 266 5 chr1 177580624 177580812 -104612852 - MIR SINE MIR -24 238 2 239 236 28 42 chr1 177580945 177581017 -104612647 - Charlie4 DNA MER1_type -10 1951 1881 1787 147 13 20 chr1 177581038 177581338 -104612326 - AluJo SINE Alu -14 298 1 2340 94 0 0 chr1 177581350 177581649 -104612015 - AluSx SINE Alu -13 299 1 2309 92 3 0 chr1 177582732 177583035 -104610629 - AluSp SINE Alu -9 304 1 1317 185 44 27 chr1 177583593 177583890 -104609774 - AluJo SINE Alu -10 302 1 884 182 77 17 chr1 177584457 177584638 -104609026 + MER20 DNA MER1_type 28 219 0 669 235 91 27 chr1 177584666 177584887 -104608777 + MIR SINE MIR 20 254 -8 493 270 26 0 chr1 177585065 177585180 -104608484 + MIR SINE MIR 8 125 -137 835 156 0 22 chr1 177585448 177585583 -104608081 + FLAM_C SINE Alu 1 132 -1 606 96 12 0 chr1 177585609 177585692 -104607972 + AluSg1 SINE Alu 41 124 -185 191 149 64 0 chr1 177585727 177585774 -104607890 + L2 LINE L2 1278 1327 -1987 342 301 28 21 chr1 177585776 177585919 -104607745 + L2 LINE L2 1814 1957 -1357 2619 247 107 21 chr1 177585939 177586373 -104607291 + L2 LINE L2 2070 2465 -848 2055 99 3 3 chr1 177586373 177586692 -104606972 + AluSx SINE Alu 1 319 0 2619 247 107 21 chr1 177586692 177587167 -104606497 + L2 LINE L2 2465 3057 -256 919 183 6 6 chr1 177587174 177587343 -104606321 - AluJb SINE Alu -7 305 137 2053 126 7 0 chr1 177587357 177587658 -104606006 - AluSx SINE Alu -9 303 1 715 268 5 33 chr1 177587927 177588140 -104605524 - AluJb SINE Alu -1 311 105 2226 100 0 0 chr1 177588193 177588494 -104605170 + AluSc SINE Alu 1 301 -8 6097 130 118 40 chr1 177589106 177589438 -104604226 + Tigger2 DNA MER2_type 806 1110 -1608 2027 119 30 13 chr1 177589438 177589740 -104603924 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr1 177589740 177589761 -104603903 + (GA)n Simple_repeat Simple_repeat 2 22 0 6097 130 118 40 chr1 177589761 177590185 -104603479 + Tigger2 DNA MER2_type 1110 1499 -1219 2359 68 3 0 chr1 177590185 177590481 -104603183 + AluSc SINE Alu 1 297 -12 6097 130 118 40 chr1 177590481 177590809 -104602855 + Tigger2 DNA MER2_type 1499 1800 -918 2402 80 3 0 chr1 177590809 177591120 -104602544 + AluSp SINE Alu 1 312 -1 6097 130 118 40 chr1 177591120 177591264 -104602400 + Tigger2 DNA MER2_type 1800 2134 -584 2128 100 7 7 chr1 177591365 177591665 -104601999 - AluSx SINE Alu -12 300 1 2073 102 17 7 chr1 177592587 177592882 -104600782 + AluSx SINE Alu 1 298 -14 1349 79 0 0 chr1 177592882 177593060 -104600604 + AluSq SINE Alu 134 311 -2 2158 97 0 7 chr1 177593094 177593393 -104600271 + AluSc SINE Alu 9 305 -4 755 225 38 6 chr1 177593563 177593723 -104599941 - FRAM SINE Alu -1 165 1 1279 177 99 4 chr1 177593790 177594033 -104599631 + AluJo SINE Alu 7 272 -40 1323 299 35 70 chr1 177594033 177594361 -104599303 + LTR27 LTR ERV1 2 340 -1054 352 0 0 0 chr1 177594361 177594400 -104599264 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2388 60 3 3 chr1 177594400 177594684 -104598980 - AluY SINE Alu -27 284 1 1323 299 35 70 chr1 177594684 177594998 -104598666 + LTR27 LTR ERV1 338 1254 -140 474 211 59 53 chr1 177595006 177595158 -104598506 + LTR27 LTR ERV1 483 635 -1 195 42 0 0 chr1 177595177 177595201 -104598463 + (A)n Simple_repeat Simple_repeat 1 24 0 2093 107 41 3 chr1 177595267 177595558 -104598106 - AluSx SINE Alu -10 302 1 1974 122 45 7 chr1 177595668 177595956 -104597708 - AluSx SINE Alu -13 299 1 232 224 165 12 chr1 177596038 177596123 -104597541 - L1MC/D LINE L1 -2024 5784 5687 372 246 157 17 chr1 177596306 177596439 -104597225 - L1MC/D LINE L1 -743 5403 5263 850 226 0 7 chr1 177596439 177596594 -104597070 - FRAM SINE Alu -9 157 4 372 246 157 17 chr1 177596594 177596650 -104597014 - L1MC/D LINE L1 -883 5263 5216 2353 93 7 3 chr1 177596699 177597001 -104596663 - AluSq SINE Alu -10 303 1 2214 123 3 0 chr1 177597002 177597294 -104596370 - AluSx SINE Alu -19 293 1 200 379 58 10 chr1 177597341 177597444 -104596220 + L3 LINE CR1 1442 1549 -28 528 291 300 21 chr1 177600113 177600450 -104593214 - L2 LINE L2 0 3272 2842 401 250 31 0 chr1 177600670 177600766 -104592898 + L2 LINE L2 3158 3256 -16 2488 81 0 0 chr1 177601434 177601730 -104591934 + AluY SINE Alu 1 296 -15 2238 102 0 7 chr1 177601743 177602038 -104591626 + AluY SINE Alu 1 293 -18 2388 75 3 0 chr1 177602159 177602451 -104591213 + AluSg SINE Alu 3 295 -15 2281 87 0 26 chr1 177602550 177602860 -104590804 + AluSc SINE Alu 1 302 -7 826 144 0 0 chr1 177603095 177603213 -104590451 + AluSp SINE Alu 1 118 -195 723 267 59 5 chr1 177603214 177603416 -104590248 + MIR SINE MIR 23 235 -27 758 142 0 0 chr1 177604633 177604746 -104588918 - AluSp/q SINE Alu -14 299 187 2558 139 98 26 chr1 177604849 177605158 -104588506 + Tigger2 DNA MER2_type 2148 2512 -206 2280 108 0 0 chr1 177605158 177605454 -104588210 - AluSq SINE Alu -17 296 1 2558 139 98 26 chr1 177605454 177605677 -104587987 + Tigger2 DNA MER2_type 2512 2718 0 1128 239 74 62 chr1 177605986 177606325 -104587339 - MER2 DNA MER2_type -1 343 1 592 262 0 8 chr1 177606525 177606651 -104587013 + FLAM_A SINE Alu 1 125 -8 189 382 66 7 chr1 177606656 177606792 -104586872 + L3 LINE CR1 938 1081 -496 248 388 100 0 chr1 177606811 177606971 -104586693 + L3 LINE CR1 1369 1544 -33 2458 72 0 13 chr1 177607652 177607957 -104585707 - AluY SINE Alu -10 301 1 1789 168 25 0 chr1 177608170 177608456 -104585208 - AluJo SINE Alu -11 301 9 426 293 41 20 chr1 177608554 177608701 -104584963 + MIR SINE MIR 37 186 -76 2556 40 3 17 chr1 177609061 177609361 -104584303 - AluY SINE Alu -15 296 1 673 201 0 22 chr1 177609536 177609670 -104583994 + FLAM_A SINE Alu 1 131 -2 21 0 0 0 chr1 177609686 177609707 -104583957 + AT_rich Low_complexity Low_complexity 1 21 0 2062 117 10 19 chr1 177610070 177610377 -104583287 + AluSx SINE Alu 1 304 -8 1593 178 60 7 chr1 177610415 177610696 -104582968 + AluJo SINE Alu 5 300 -12 1779 102 113 22 chr1 177611560 177611834 -104581830 + AluSg1 SINE Alu 1 299 -10 1450 186 69 4 chr1 177611942 177612216 -104581448 + AluJo SINE Alu 1 292 -20 1713 125 12 27 chr1 177612220 177612476 -104581188 + AluSx SINE Alu 38 289 -23 2224 106 3 7 chr1 177612544 177612836 -104580828 + AluSp SINE Alu 1 291 -22 2252 99 3 16 chr1 177612993 177613296 -104580368 + AluSp SINE Alu 1 299 -14 1944 97 8 8 chr1 177613511 177613778 -104579886 - AluY SINE Alu -44 267 1 2256 115 3 0 chr1 177613781 177614076 -104579588 - AluSx SINE Alu -16 296 1 2271 83 14 3 chr1 177614086 177614376 -104579288 - AluSg SINE Alu -17 293 1 1083 150 0 6 chr1 177614483 177614650 -104579014 - AluSq SINE Alu -12 301 136 2056 125 0 3 chr1 177614652 177614940 -104578724 - AluSc SINE Alu -22 287 1 1442 168 0 9 chr1 177615326 177615552 -104578112 + AluJo SINE Alu 70 293 -19 2191 117 3 19 chr1 177615579 177615896 -104577768 - AluSx SINE Alu 0 312 1 1707 199 20 7 chr1 177616064 177616370 -104577294 + AluJb SINE Alu 1 310 -2 2385 113 7 0 chr1 177616383 177616693 -104576971 + AluSx SINE Alu 1 312 0 1871 165 7 7 chr1 177616777 177617080 -104576584 + AluSx SINE Alu 1 303 -9 5953 57 28 17 chr1 177617277 177618102 -104575562 + SVA Other Other 1 834 -552 1645 204 30 8 chr1 177618215 177618543 -104575121 - MER82 DNA MER2_type -281 372 34 2408 78 3 0 chr1 177618543 177618836 -104574828 + AluSc SINE Alu 6 299 -10 1645 204 30 8 chr1 177618836 177618870 -104574794 - MER82 DNA MER2_type -619 34 2 2324 100 0 7 chr1 177619479 177619780 -104573884 + AluSx SINE Alu 1 299 -13 1285 217 155 3 chr1 177619781 177620155 -104573509 + MLT1C LTR MaLR 34 464 -3 221 0 0 33 chr1 177620545 177620575 -104573089 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 810 144 0 0 chr1 177620575 177620693 -104572971 - AluJb SINE Alu -194 118 1 262 330 137 52 chr1 177620975 177621187 -104572477 - L2 LINE L2 -5 3267 3038 185 146 125 21 chr1 177621451 177621499 -104572165 + L2 LINE L2 1658 1710 -1604 351 234 21 0 chr1 177621502 177621596 -104572068 + L1MA10 LINE L1 6230 6325 -9 2407 84 0 10 chr1 177622646 177622955 -104570709 + AluSx SINE Alu 1 306 -6 242 322 82 7 chr1 177623161 177623307 -104570357 - MIR SINE MIR -29 233 77 2614 37 3 0 chr1 177624506 177624802 -104568862 + AluSx SINE Alu 2 298 -14 408 216 0 0 chr1 177625387 177625461 -104568203 + L2 LINE L2 3236 3309 -4 2238 98 0 3 chr1 177625687 177625982 -104567682 - AluY SINE Alu -17 294 1 2415 86 3 0 chr1 177625982 177626284 -104567380 - AluSp SINE Alu -10 303 1 1430 142 60 0 chr1 177626422 177626640 -104567024 - AluSx SINE Alu -81 231 1 203 256 195 12 chr1 177626787 177626869 -104566795 + MIR SINE MIR 71 167 -95 290 280 68 45 chr1 177626909 177627041 -104566623 + L2 LINE L2 3124 3258 -55 215 278 19 0 chr1 177627037 177627091 -104566573 + MIR SINE MIR 158 212 -50 * 2591 68 3 0 chr1 177627304 177627614 -104566050 + AluY SINE Alu 1 311 0 352 379 85 0 chr1 177628126 177628374 -104565290 + L2 LINE L2 3004 3272 0 360 227 53 38 chr1 177629078 177629210 -104564454 - MLT1K LTR MaLR -329 259 126 2276 125 3 0 chr1 177629250 177629561 -104564103 - AluSq SINE Alu -1 312 1 194 365 0 14 chr1 177630672 177630746 -104562918 - L2 LINE L2 -78 3194 3122 2233 127 0 0 chr1 177630802 177631101 -104562563 + AluSq SINE Alu 1 299 -14 2258 114 7 0 chr1 177631107 177631413 -104562251 + AluSx SINE Alu 1 308 -4 2296 129 3 0 chr1 177631433 177631744 -104561920 + AluSx SINE Alu 1 312 0 805 260 94 18 chr1 177631883 177632160 -104561504 - L2 LINE L2 -1 3312 3015 2286 134 54 52 chr1 177632923 177633347 -104560317 - MSTB LTR MaLR -1 425 1 2291 99 0 26 chr1 177633491 177633804 -104559860 + AluSx SINE Alu 1 305 -7 1319 175 36 16 chr1 177633872 177634175 -104559489 + L1ME2 LINE L1 4680 4988 -1158 753 246 12 53 chr1 177634179 177634423 -104559241 + L1MC5 LINE L1 6638 6871 -1090 498 235 73 28 chr1 177634428 177634607 -104559057 + L1M4 LINE L1 2232 2418 -3728 547 217 14 0 chr1 177634608 177634746 -104558918 + L1ME2 LINE L1 5770 5909 -255 476 103 15 0 chr1 177634776 177634844 -104558820 + Alu SINE Alu 2 70 -248 613 173 64 77 chr1 177634971 177635191 -104558473 + L1ME2 LINE L1 5926 6142 -22 1952 140 18 0 chr1 177635193 177635479 -104558185 - AluSx SINE Alu -21 291 1 431 306 23 50 chr1 177635539 177635758 -104557906 + L1MC4 LINE L1 7829 8041 -1 697 206 88 10 chr1 177635779 177635983 -104557681 + L1MC5 LINE L1 7698 7917 -44 2375 104 0 0 chr1 177636053 177636360 -104557304 + AluSc SINE Alu 1 307 -2 890 195 96 53 chr1 177636511 177636969 -104556695 - MLT1D LTR MaLR 0 505 6 612 188 45 23 chr1 177636969 177637102 -104556562 - L2 LINE L2 -433 2881 2746 1924 175 13 0 chr1 177637142 177637450 -104556214 + AluJb SINE Alu 1 312 0 780 152 0 0 chr1 177637450 177637562 -104556102 - AluJo/FLAM SINE Alu -199 113 2 1151 293 57 58 chr1 177637562 177637821 -104555843 - ERVL LTR ERVL -2118 2878 2620 2154 92 16 20 chr1 177637821 177638127 -104555537 - AluSq SINE Alu -8 305 1 1151 293 57 58 chr1 177638127 177638473 -104555191 - ERVL LTR ERVL -2376 2620 2233 1049 151 11 22 chr1 177638518 177638697 -104554967 - FRAM SINE Alu 0 176 1 1128 331 10 12 chr1 177638752 177639163 -104554501 - ERVL LTR ERVL -2848 2148 1739 1323 131 5 5 chr1 177639194 177639385 -104554279 - AluSx SINE Alu -121 191 1 535 327 81 59 chr1 177639386 177640127 -104553537 - ERVL LTR ERVL -3876 1120 364 2391 118 0 0 chr1 177640549 177640862 -104552802 - AluSq SINE Alu 0 313 1 2522 80 0 3 chr1 177640864 177641176 -104552488 - AluY SINE Alu 0 311 1 366 143 0 0 chr1 177641236 177641299 -104552365 + (TTCC)n Simple_repeat Simple_repeat 2 64 0 2260 117 7 3 chr1 177641299 177641608 -104552056 - AluSg SINE Alu 0 310 1 259 181 125 14 chr1 177641760 177641832 -104551832 + L2 LINE L2 3222 3301 -12 1841 130 4 11 chr1 177641866 177642143 -104551521 - AluJo SINE Alu -27 285 11 1665 127 8 16 chr1 177643226 177643470 -104550194 + AluSq SINE Alu 1 242 -71 760 194 0 0 chr1 177643570 177643714 -104549950 + AluYa5 SINE Alu 163 306 -5 335 330 89 0 chr1 177643777 177643889 -104549775 - L2 LINE L2 0 3272 3151 553 269 21 14 chr1 177644027 177644168 -104549496 - MIR SINE MIR -115 147 6 1270 182 66 59 chr1 177644958 177645244 -104548420 - AluJb SINE Alu -12 290 3 1836 255 127 28 chr1 177645392 177645913 -104547751 + L2 LINE L2 1676 2291 -1023 2170 125 0 0 chr1 177645913 177646216 -104547448 - AluSx SINE Alu -9 303 1 1836 255 127 28 chr1 177646216 177646420 -104547244 + L2 LINE L2 2291 2473 -841 4439 94 56 103 chr1 177646452 177646725 -104546939 - Tigger3b DNA MER2_type -1797 1231 947 1517 151 60 37 chr1 177646725 177647023 -104546641 + AluJb SINE Alu 2 306 -6 4439 94 56 103 chr1 177647023 177647297 -104546367 - Tigger3b DNA MER2_type -2081 947 661 1615 123 31 82 chr1 177647297 177647614 -104546050 - AluJo SINE Alu -11 301 1 2431 65 0 7 chr1 177647618 177647925 -104545739 - AluY SINE Alu -6 305 1 4439 94 56 103 chr1 177647925 177647946 -104545718 - Tigger3b DNA MER2_type -2370 658 638 1778 179 7 0 chr1 177647946 177648243 -104545421 - AluJb SINE Alu -12 300 2 4439 94 56 103 chr1 177648243 177648257 -104545407 - Tigger3b DNA MER2_type -2390 638 625 2259 89 0 3 chr1 177648257 177648559 -104545105 - AluSc SINE Alu -8 301 1 4439 94 56 103 chr1 177648559 177648772 -104544892 - Tigger3b DNA MER2_type -2403 625 403 1521 110 0 23 chr1 177648772 177648937 -104544727 - AluSq SINE Alu -15 298 131 242 0 61 0 chr1 177648937 177648970 -104544694 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2358 56 0 3 chr1 177648970 177649255 -104544409 - AluY SINE Alu -27 284 1 1521 110 0 23 chr1 177649255 177649306 -104544358 - AluSq SINE Alu -180 133 86 4439 94 56 103 chr1 177649306 177649507 -104544157 - Tigger3b DNA MER2_type -2625 403 274 443 228 10 10 chr1 177649506 177649607 -104544057 - Tigger3b DNA MER2_type -1130 101 1 * 842 174 46 67 chr1 177649607 177650002 -104543662 - MLT1A2 LTR MaLR -32 362 1 749 274 78 26 chr1 177650005 177650311 -104543353 + L2 LINE L2 2475 2796 -518 235 173 0 77 chr1 177650455 177650507 -104543157 + L2 LINE L2 3265 3312 -1 1564 139 4 43 chr1 177650562 177650843 -104542821 + AluJb SINE Alu 26 295 -17 260 236 102 35 chr1 177651060 177651223 -104542441 - MIR SINE MIR 0 262 81 294 95 0 0 chr1 177651232 177651274 -104542390 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 233 213 0 0 chr1 177652195 177652242 -104541422 + L2 LINE L2 3267 3313 0 202 270 54 14 chr1 177653186 177653260 -104540404 + L2 LINE L2 2730 2806 -508 187 231 0 0 chr1 177653629 177653668 -104539996 + MIR SINE MIR 217 255 -7 207 0 0 0 chr1 177654103 177654126 -104539538 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 698 128 10 0 chr1 177654129 177654231 -104539433 - AluSg/x SINE Alu -32 280 178 228 281 16 0 chr1 177654831 177654895 -104538769 + MIR3 SINE MIR 116 180 -28 215 315 206 11 chr1 177654889 177655073 -104538591 + L2 LINE L2 3046 3265 -7 * 1379 73 0 107 chr1 177657383 177657616 -104536048 + AluSg SINE Alu 1 208 -102 576 109 50 40 chr1 177657721 177657822 -104535842 - AluSp SINE Alu -176 137 36 853 180 78 161 chr1 177658037 177658107 -104535557 - MER2 DNA MER2_type -3 341 267 2158 57 85 0 chr1 177658107 177658389 -104535275 + AluSc SINE Alu 1 306 -3 853 180 78 161 chr1 177658389 177658526 -104535138 - MER2 DNA MER2_type -77 267 120 2091 131 10 0 chr1 177658526 177658831 -104534833 + AluSx SINE Alu 1 308 -4 853 180 78 161 chr1 177658831 177658888 -104534776 - MER2 DNA MER2_type -224 120 60 1538 157 76 0 chr1 177658888 177659200 -104534464 + AluSx SINE Alu 1 332 0 853 180 78 161 chr1 177659200 177659222 -104534442 - MER2 DNA MER2_type -284 60 38 189 107 0 0 chr1 177659222 177659250 -104534414 + (TAA)n Simple_repeat Simple_repeat 1 28 0 853 180 78 161 chr1 177659250 177659331 -104534333 - MER2 DNA MER2_type -306 38 1 1034 98 86 43 chr1 177659641 177659804 -104533860 + AluSp SINE Alu 1 170 -143 1700 139 0 0 chr1 177659923 177660175 -104533489 - AluSq SINE Alu -61 252 1 512 247 84 0 chr1 177660908 177661062 -104532602 - MIR3 SINE MIR -26 182 16 240 254 158 0 chr1 177661414 177661501 -104532163 - MIR SINE MIR -44 164 65 965 185 0 0 chr1 177661523 177661685 -104531979 - AluJb SINE Alu -28 284 123 1672 171 7 13 chr1 177661856 177662154 -104531510 + AluJo SINE Alu 1 296 -16 684 97 35 0 chr1 177662637 177662750 -104530914 - L1MA5A LINE L1 -104 6193 6077 1484 137 89 0 chr1 177662765 177663036 -104530628 + MER1B DNA MER1_type 44 338 -1 1808 58 23 69 chr1 177663039 177663303 -104530361 - L1MA5A LINE L1 -216 6081 5835 2345 80 3 0 chr1 177663303 177663603 -104530061 - AluSp SINE Alu -12 301 1 1808 58 23 69 chr1 177663603 177663686 -104529978 - L1MA5A LINE L1 -462 5835 5750 2137 107 3 7 chr1 177663791 177664090 -104529574 - AluSq SINE Alu -15 298 1 738 176 0 29 chr1 177664244 177664380 -104529284 + FLAM_A SINE Alu 1 132 -1 1694 171 6 19 chr1 177664446 177664761 -104528903 - AluSx SINE Alu -1 311 1 1949 161 0 0 chr1 177665083 177665381 -104528283 - AluSx SINE Alu -14 298 1 820 219 0 0 chr1 177665396 177665542 -104528122 + FRAM SINE Alu 1 138 -38 223 269 176 46 chr1 177666449 177666557 -104527107 + MIR SINE MIR 61 184 -24 2414 87 0 3 chr1 177667792 177668103 -104525561 - AluSx SINE Alu -2 310 1 2112 104 30 3 chr1 177668910 177669208 -104524456 - AluSg SINE Alu -3 307 2 2027 70 0 86 chr1 177669252 177669567 -104524097 + AluY SINE Alu 1 288 -23 487 127 0 0 chr1 177669669 177669740 -104523924 + Alu SINE Alu 234 304 -8 497 283 43 53 chr1 177669794 177669890 -104523774 - MIR SINE MIR -3 259 164 2032 133 0 7 chr1 177669890 177670191 -104523473 - AluJb SINE Alu -13 299 1 497 283 43 53 chr1 177670191 177670281 -104523383 - MIR SINE MIR -98 164 75 253 367 18 0 chr1 177671500 177671609 -104522055 - L2 LINE L2 -256 3016 2906 227 159 23 0 chr1 177671918 177671962 -104521702 - L2 LINE L2 0 3313 3269 1738 69 5 0 chr1 177672348 177672566 -104521098 - AluSq SINE Alu -94 219 1 1270 73 0 39 chr1 177672639 177672817 -104520847 - AluY SINE Alu -140 171 1 2438 75 0 0 chr1 177672819 177673124 -104520540 - AluSq SINE Alu -8 305 1 633 301 40 0 chr1 177673212 177673385 -104520279 + MIR SINE MIR 74 253 -9 307 322 59 59 chr1 177674275 177674514 -104519150 - L3 LINE CR1 -5 1572 1334 1689 154 49 0 chr1 177675702 177675988 -104517676 + AluJo SINE Alu 1 300 -12 186 322 46 11 chr1 177680173 177680260 -104513404 + L2 LINE L2 3095 3184 -88 345 247 138 13 chr1 177681627 177681785 -104511879 - MIR SINE MIR -34 228 53 305 338 44 7 chr1 177681813 177681949 -104511715 + L2 LINE L2 2896 3036 -277 493 203 72 39 chr1 177681960 177682113 -104511551 + L1MC5 LINE L1 7753 7910 -51 1327 126 14 28 chr1 177682156 177682371 -104511293 - AluSq SINE Alu -17 296 85 321 330 9 69 chr1 177682374 177682607 -104511057 + L2 LINE L2 3056 3274 -39 479 263 102 0 chr1 177682980 177683117 -104510547 - MIR SINE MIR 0 262 112 191 374 0 0 chr1 177683176 177683259 -104510405 - MIR SINE MIR -66 142 60 2216 106 10 0 chr1 177683605 177683908 -104509756 - AluSq SINE Alu -7 306 1 21 57 0 0 chr1 177683959 177683994 -104509670 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 177684180 177684215 -104509449 + AT_rich Low_complexity Low_complexity 1 35 0 2284 64 0 73 chr1 177684247 177684576 -104509088 + AluY SINE Alu 1 305 -6 224 282 24 47 chr1 177684889 177684974 -104508690 - L2 LINE L2 -270 3002 2920 1610 142 13 62 chr1 177685024 177685184 -104508480 - AluJb SINE Alu -16 296 157 2348 71 0 3 chr1 177685184 177685478 -104508186 - AluY SINE Alu -18 293 1 1610 142 13 62 chr1 177685478 177685626 -104508038 - AluJb SINE Alu -155 157 3 2399 85 0 0 chr1 177685879 177686186 -104507478 - AluSq SINE Alu -6 307 1 260 282 77 0 chr1 177686195 177686273 -104507391 + MIR SINE MIR 162 245 -17 228 157 20 20 chr1 177686282 177686333 -104507331 + LTR10B LTR ERV1 1 51 -496 2350 143 48 60 chr1 177686355 177686422 -104507242 + LTR10A LTR ERV1 1 67 -566 2307 73 0 10 chr1 177686422 177686751 -104506913 - AluY SINE Alu 0 311 1 2157 98 3 0 chr1 177686751 177687045 -104506619 - AluSp SINE Alu -17 296 1 2350 143 48 60 chr1 177687045 177687288 -104506376 + LTR10A LTR ERV1 66 310 -323 2818 19 0 0 chr1 177687288 177687606 -104506058 - AluYb8 SINE Alu 0 318 1 2350 143 48 60 chr1 177687606 177687878 -104505786 + LTR10A LTR ERV1 310 629 -4 267 240 58 29 chr1 177689798 177689902 -104503762 + MIR SINE MIR 30 136 -72 222 349 211 7 chr1 177690202 177690354 -104503310 + MIR SINE MIR 63 245 -17 330 222 60 26 chr1 177691432 177691549 -104502115 + MIR3 SINE MIR 39 159 -49 2321 72 0 3 chr1 177692212 177692504 -104501160 - AluSc SINE Alu -18 291 1 2180 110 3 0 chr1 177693422 177693714 -104499950 - AluSx SINE Alu -19 293 1 474 316 39 7 chr1 177694254 177694409 -104499255 + MIR SINE MIR 54 213 -49 197 312 188 43 chr1 177695855 177695993 -104497671 + L3b LINE CR1 1296 1453 -130 347 247 62 86 chr1 177697139 177697300 -104496364 - MIR SINE MIR -37 171 28 2424 85 0 0 chr1 177697460 177697755 -104495909 + AluSx SINE Alu 7 301 -11 2373 116 0 0 chr1 177698831 177699141 -104494523 - AluSx SINE Alu -2 310 1 309 336 89 57 chr1 177699680 177700049 -104493615 + L2 LINE L2 2889 3269 -3 357 256 0 47 chr1 177700317 177700403 -104493261 + LTR67 LTR ERVL 97 178 -379 2430 85 13 0 chr1 177700495 177700846 -104492818 + AluY SINE Alu 1 355 0 338 267 158 14 chr1 177703180 177703326 -104490338 + MIR3 SINE MIR 19 185 -23 553 228 139 13 chr1 177704212 177704370 -104489294 - MER5B DNA MER1_type 0 178 1 2238 94 0 26 chr1 177707530 177707838 -104485826 + AluSc SINE Alu 1 300 -9 242 294 82 0 chr1 177707890 177707975 -104485689 + MIR SINE MIR 125 216 -46 201 219 27 27 chr1 177709566 177709639 -104484025 + (CCG)n Simple_repeat Simple_repeat 3 75 0 21 71 0 0 chr1 177711018 177711060 -104482604 + GC_rich Low_complexity Low_complexity 1 42 0 182 357 36 12 chr1 177714727 177714811 -104478853 - MER5A DNA MER1_type -1 188 103 576 152 0 0 chr1 177715720 177715819 -104477845 + (CA)n Simple_repeat Simple_repeat 1 99 0 426 20 0 0 chr1 177717831 177717882 -104475782 + (CA)n Simple_repeat Simple_repeat 2 52 0 186 43 0 0 chr1 177718968 177718991 -104474673 + (CCA)n Simple_repeat Simple_repeat 1 23 0 303 28 0 0 chr1 177723956 177723992 -104469672 + (TG)n Simple_repeat Simple_repeat 1 36 0 199 267 93 23 chr1 177724347 177724433 -104469231 + MIR3 SINE MIR 68 159 -49 204 308 94 34 chr1 177724821 177724938 -104468726 + MIR SINE MIR 77 200 -62 360 0 0 0 chr1 177724968 177725008 -104468656 + (TG)n Simple_repeat Simple_repeat 2 41 0 267 293 163 12 chr1 177725873 177726039 -104467625 + MIR3 SINE MIR 2 191 -71 280 286 217 26 chr1 177727612 177727801 -104465863 - L2 LINE L2 -148 3165 2941 403 277 19 44 chr1 177728041 177728222 -104465442 + MIR3 SINE MIR 4 184 -63 233 239 30 0 chr1 177728314 177728381 -104465283 + L3 LINE CR1 800 868 -709 205 280 20 0 chr1 177728379 177728429 -104465235 - L2 LINE L2 0 3272 3222 * 456 347 57 5 chr1 177728650 177728843 -104464821 + L3 LINE CR1 870 1072 -505 484 298 62 6 chr1 177728896 177729074 -104464590 + MIR SINE MIR 63 250 -12 315 359 144 4 chr1 177729127 177729397 -104464267 + L3 LINE CR1 1233 1540 -37 919 211 0 0 chr1 177729397 177729563 -104464101 + AluJb SINE Alu 145 310 -2 372 313 27 9 chr1 177729665 177729777 -104463887 + L2 LINE L2 3200 3313 0 2586 77 0 0 chr1 177729861 177730172 -104463492 - AluSx SINE Alu -1 311 1 2311 106 6 3 chr1 177730940 177731292 -104462372 + AluSx SINE Alu 1 353 0 194 286 62 89 chr1 177731492 177731604 -104462060 - L2 LINE L2 -1884 1430 1322 264 280 28 65 chr1 177732130 177732237 -104461427 - MIR SINE MIR -56 206 104 1166 156 0 6 chr1 177732237 177732416 -104461248 + AluJb SINE Alu 135 312 0 2448 85 0 16 chr1 177732527 177732844 -104460820 - AluSx SINE Alu 0 312 1 319 253 47 9 chr1 177733268 177733431 -104460233 - MIR SINE MIR -15 247 28 944 153 7 7 chr1 177733953 177734103 -104459561 + FRAM SINE Alu 1 150 -26 2321 104 3 0 chr1 177734116 177734415 -104459249 - AluSp SINE Alu -12 301 2 747 148 7 22 chr1 177734840 177735001 -104458663 + FLAM_C SINE Alu 1 159 0 301 269 123 39 chr1 177735213 177735343 -104458321 + MIR SINE MIR 122 262 0 232 278 89 141 chr1 177735341 177735654 -104458010 - L2 LINE L2 -865 2449 2153 * 2370 89 3 10 chr1 177735950 177736252 -104457412 + AluSx SINE Alu 1 300 -12 312 283 88 58 chr1 177736827 177736965 -104456699 + L1ME4a LINE L1 5553 5685 -436 1773 187 7 0 chr1 177736965 177737254 -104456410 - AluJb SINE Alu -19 293 3 312 283 88 58 chr1 177737254 177737515 -104456149 + L1ME4a LINE L1 5685 5964 -157 478 350 107 13 chr1 177737524 177737841 -104455823 - L2 LINE L2 -832 2482 2136 191 337 134 33 chr1 177737975 177738556 -104455108 + L2 LINE L2 1382 2021 -1293 183 222 0 0 chr1 177738583 177738619 -104455045 - L2 LINE L2 -9 3263 3228 255 333 69 39 chr1 177738672 177739035 -104454629 - L2 LINE L2 -1377 1937 1564 499 223 116 113 chr1 177739145 177739301 -104454363 + MER102a DNA MER1_type 2 156 -1261 2006 128 23 3 chr1 177739301 177739606 -104454058 + AluSx SINE Alu 1 311 -1 499 223 116 113 chr1 177739606 177739776 -104453888 + MER102a DNA MER1_type 156 329 -1 194 171 0 24 chr1 177740085 177740126 -104453538 - MIR SINE MIR -123 139 100 369 275 108 0 chr1 177740157 177740277 -104453387 - L2 LINE L2 -8 3264 3132 2273 97 7 3 chr1 177740358 177740666 -104452998 - AluSg SINE Alu -1 309 1 427 281 16 16 chr1 177740776 177740897 -104452767 - MIR SINE MIR -68 140 20 1914 155 11 3 chr1 177741116 177741400 -104452264 + AluJo SINE Alu 9 294 -18 504 251 99 37 chr1 177741497 177741688 -104451976 - L3 LINE CR1 0 1577 1375 2266 105 3 6 chr1 177741925 177742238 -104451426 - AluJb SINE Alu 0 312 1 207 100 0 0 chr1 177742589 177742619 -104451045 + (A)n Simple_repeat Simple_repeat 1 30 0 2587 58 0 7 chr1 177742725 177743034 -104450630 + AluSx SINE Alu 1 307 -5 239 300 45 18 chr1 177743034 177743144 -104450520 + MIR SINE MIR 24 136 -72 216 0 0 0 chr1 177743154 177743178 -104450486 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 184 200 0 25 chr1 177743952 177743992 -104449672 - MIR SINE MIR -6 256 218 2532 63 13 0 chr1 177744728 177745029 -104448635 + AluSg SINE Alu 2 306 -4 2233 108 3 13 chr1 177745596 177745766 -104447898 - AluSx SINE Alu -9 303 136 2316 90 10 3 chr1 177745766 177746066 -104447598 - AluSg SINE Alu -8 302 1 2233 108 3 13 chr1 177746066 177746201 -104447463 - AluSx SINE Alu -176 136 1 2319 97 0 0 chr1 177746313 177746613 -104447051 + AluY SINE Alu 1 298 -13 357 355 67 67 chr1 177746859 177747189 -104446475 + L2 LINE L2 2526 2855 -459 310 340 136 45 chr1 177747246 177747555 -104446109 + L2 LINE L2 2944 3280 -33 339 250 96 10 chr1 177747853 177747957 -104445707 - MIR SINE MIR -111 151 39 407 330 57 10 chr1 177748233 177748427 -104445237 - MLT1I LTR MaLR -203 206 4 1032 201 19 87 chr1 177748636 177748945 -104444719 - MLT1F LTR MaLR -250 292 5 185 218 0 141 chr1 177749062 177749140 -104444524 - MIR SINE MIR -85 177 111 2394 56 3 13 chr1 177749400 177749702 -104443962 - AluSp SINE Alu -14 299 1 2300 108 3 0 chr1 177749702 177750008 -104443656 - AluSx SINE Alu -5 307 1 433 136 62 12 chr1 177751834 177751915 -104441749 - L2 LINE L2 0 3313 3229 392 312 0 0 chr1 177752437 177752594 -104441070 + (CA)n Simple_repeat Simple_repeat 1 157 0 215 31 31 0 chr1 177754335 177754367 -104439297 + (TAA)n Simple_repeat Simple_repeat 3 35 0 246 234 0 0 chr1 177755691 177755798 -104437866 + (CTG)n Simple_repeat Simple_repeat 3 109 0 2207 128 0 0 chr1 177756115 177756420 -104437244 - AluSx SINE Alu -7 305 1 1632 169 49 0 chr1 177756470 177756754 -104436910 + AluJo SINE Alu 1 298 -14 1695 102 8 4 chr1 177757075 177757311 -104436353 + AluSg/x SINE Alu 74 310 0 292 286 29 29 chr1 177757456 177757467 -104436197 - MIR SINE MIR -111 151 141 716 248 164 9 chr1 177757467 177757693 -104435971 + MIR SINE MIR 2 262 0 292 286 29 29 chr1 177757693 177757786 -104435878 - MIR SINE MIR -120 142 47 968 119 0 0 chr1 177757916 177758050 -104435614 - AluSg/x SINE Alu -10 302 169 1857 100 0 0 chr1 177758050 177758291 -104435373 - AluSg SINE Alu -69 241 1 304 288 87 7 chr1 177758294 177758437 -104435227 - MIR3 SINE MIR -45 163 12 252 240 67 0 chr1 177759104 177759179 -104434485 - MIR3 SINE MIR -17 191 112 1288 109 0 31 chr1 177759404 177759578 -104434086 - AluSg/x SINE Alu -6 304 126 2183 95 7 3 chr1 177759578 177759872 -104433792 - AluY SINE Alu -16 295 1 2159 105 3 13 chr1 177759872 177760177 -104433487 - AluSc SINE Alu -7 302 1 1288 109 0 31 chr1 177760177 177760194 -104433470 - AluSg/x SINE Alu -182 128 118 247 134 17 250 chr1 177761023 177761043 -104432621 + MER53 DNA DNA 12 35 -154 1717 152 55 3 chr1 177761043 177761332 -104432332 + AluSx SINE Alu 1 304 -8 247 134 17 250 chr1 177761332 177761422 -104432242 + MER53 DNA DNA 35 43 -146 1693 141 11 18 chr1 177761422 177761705 -104431959 + AluJo SINE Alu 32 312 0 247 134 17 250 chr1 177761705 177761825 -104431839 + MER53 DNA DNA 43 189 0 * 430 176 130 0 chr1 177761725 177761833 -104431831 - MER53 DNA DNA -66 123 2 478 316 34 39 chr1 177764747 177764953 -104428711 - MIR SINE MIR -2 260 56 2267 109 3 0 chr1 177765380 177765692 -104427972 - AluSp SINE Alu 0 313 1 341 358 47 13 chr1 177768669 177768840 -104424824 - MIR SINE MIR -62 146 18 209 308 34 8 chr1 177768872 177768989 -104424675 + (CAGAGA)n Simple_repeat Simple_repeat 4 123 0 780 57 0 0 chr1 177770962 177771068 -104422596 - HY1 scRNA scRNA -1 111 6 1134 169 55 32 chr1 177771139 177771358 -104422306 - MER58A DNA MER1_type 0 224 1 195 333 150 0 chr1 177771683 177771803 -104421861 + L3 LINE CR1 1436 1573 -4 1171 179 78 78 chr1 177772385 177772692 -104420972 - AluJb SINE Alu 0 312 6 1938 104 0 11 chr1 177772699 177772968 -104420696 - AluSg SINE Alu -2 308 43 319 310 23 16 chr1 177773533 177773662 -104420002 + L2 LINE L2 3121 3250 -63 220 311 58 19 chr1 177773708 177773811 -104419853 - L3b LINE CR1 -178 1405 1299 251 209 39 77 chr1 177776246 177776428 -104417236 + (CAGAGA)n Simple_repeat Simple_repeat 3 177 0 185 320 72 24 chr1 177776482 177776607 -104417057 - L2 LINE L2 -58 3214 3084 388 293 67 20 chr1 177778035 177778185 -104415479 + MIR3 SINE MIR 33 189 -19 193 321 12 37 chr1 177778529 177778610 -104415054 - MIR SINE MIR -158 104 26 304 273 60 11 chr1 177781582 177781723 -104411941 - MIR SINE MIR -56 152 29 831 170 52 0 chr1 177782388 177782541 -104411123 + AluJb SINE Alu 137 297 -15 199 214 48 0 chr1 177783020 177783062 -104410602 - MIR3 SINE MIR -15 193 150 198 279 13 51 chr1 177783318 177783397 -104410267 - MIR3 SINE MIR -130 78 3 192 224 52 35 chr1 177783930 177783988 -104409676 - L3b LINE CR1 -185 1398 1340 234 0 0 0 chr1 177784964 177784990 -104408674 + (A)n Simple_repeat Simple_repeat 1 26 0 218 293 17 0 chr1 177785366 177785424 -104408240 + MIR SINE MIR 64 122 -86 216 158 0 0 chr1 177785444 177785482 -104408182 + CT-rich Low_complexity Low_complexity 1 38 0 217 220 40 0 chr1 177785506 177785556 -104408108 + (CATA)n Simple_repeat Simple_repeat 3 54 0 212 163 0 23 chr1 177787902 177787945 -104405719 + GA-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr1 177788001 177788024 -104405640 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 177788521 177788545 -104405119 + AT_rich Low_complexity Low_complexity 1 24 0 2129 87 3 39 chr1 177788765 177789075 -104404589 - AluSx SINE Alu -11 301 3 560 346 26 21 chr1 177789140 177789374 -104404290 + MIR SINE MIR 2 236 -26 255 291 136 9 chr1 177791408 177791518 -104402146 + L2 LINE L2 3145 3268 -4 2385 70 0 0 chr1 177792480 177792779 -104400885 + AluSg SINE Alu 1 299 -11 250 225 197 0 chr1 177792946 177793017 -104400647 + L2 LINE L2 3206 3290 -23 1178 179 116 3 chr1 177793024 177793309 -104400355 + MER2 DNA MER2_type 1 317 -28 200 305 34 0 chr1 177793331 177793390 -104400274 + L2 LINE L2 2999 3059 -213 439 346 66 4 chr1 177793506 177793734 -104399930 + MIR SINE MIR 13 254 -8 244 306 52 67 chr1 177793755 177793869 -104399795 + L2 LINE L2 3182 3295 -18 1119 196 116 54 chr1 177793869 177794007 -104399657 + AluJo SINE Alu 1 129 -173 2189 95 0 22 chr1 177794007 177794322 -104399342 + AluSc SINE Alu 1 308 -1 1119 196 116 54 chr1 177794322 177794459 -104399205 + AluJo SINE Alu 129 293 -9 244 306 52 67 chr1 177794459 177794478 -104399186 + L2 LINE L2 3295 3313 0 234 250 156 0 chr1 177797572 177797636 -104396028 - L2 LINE L2 -5 3267 3194 255 217 229 0 chr1 177798095 177798178 -104395486 - MIR SINE MIR -112 150 49 2379 82 3 0 chr1 177798235 177798556 -104395108 + AluSx SINE Alu 3 312 0 411 286 72 13 chr1 177798631 177798802 -104394862 + MIR SINE MIR 17 206 -56 2019 123 18 0 chr1 177799674 177799974 -104393690 - AluSg SINE Alu 0 305 1 257 291 36 9 chr1 177800216 177800326 -104393338 + L1MC/D LINE L1 5775 5887 -1921 2351 123 0 0 chr1 177800331 177800641 -104393023 + AluSx SINE Alu 1 310 -2 2330 99 0 29 chr1 177800665 177800800 -104392864 + AluSp SINE Alu 2 139 -174 2350 93 0 40 chr1 177800800 177801124 -104392540 + AluSx SINE Alu 1 311 -1 2330 99 0 29 chr1 177801124 177801302 -104392362 + AluSp SINE Alu 139 306 -7 2478 69 3 3 chr1 177801302 177801608 -104392056 + AluY SINE Alu 1 306 -5 723 230 72 38 chr1 177801816 177802218 -104391446 - MLT1G1 LTR MaLR -218 372 3 328 264 93 57 chr1 177802244 177802384 -104391280 + HAL1b LINE L1 1198 1342 -6 561 283 71 78 chr1 177802426 177802709 -104390955 + L3 LINE CR1 373 653 -924 766 243 273 19 chr1 177802808 177803291 -104390373 - MLT1G1 LTR MaLR -2 553 5 2286 98 3 22 chr1 177803293 177803610 -104390054 + AluSx SINE Alu 1 311 -1 422 156 9 141 chr1 177803720 177803956 -104389708 - MLT1J1 LTR MaLR 0 409 232 2420 101 3 0 chr1 177804018 177804324 -104389340 - AluSq SINE Alu -6 307 1 32 43 0 0 chr1 177804324 177804370 -104389294 + AT_rich Low_complexity Low_complexity 1 46 0 1331 181 85 46 chr1 177804372 177804654 -104389010 + AluJo SINE Alu 3 295 -17 803 126 9 0 chr1 177804667 177804778 -104388886 - FLAM_C SINE Alu -19 114 3 409 256 43 0 chr1 177804780 177804897 -104388767 - MLT1J2 LTR MaLR -262 188 67 876 227 81 90 chr1 177805005 177805179 -104388485 + L2 LINE L2 2973 3144 -169 2149 136 0 0 chr1 177805179 177805473 -104388191 - AluSx SINE Alu -18 294 1 876 227 81 90 chr1 177805473 177805642 -104388022 + L2 LINE L2 3144 3313 0 1162 184 11 19 chr1 177805731 177805997 -104387667 - L1MD3 LINE L1 0 7995 7732 2277 117 3 0 chr1 177806321 177806630 -104387034 - AluSx SINE Alu 0 312 3 313 265 108 20 chr1 177806691 177806793 -104386871 + L1ME4a LINE L1 5812 5922 -199 389 226 113 0 chr1 177806802 177806935 -104386729 + L1ME4a LINE L1 5973 6120 -1 527 226 121 62 chr1 177806945 177807029 -104386635 + L1ME4a LINE L1 5599 5677 -444 1878 154 7 3 chr1 177807029 177807321 -104386343 + AluJb SINE Alu 7 299 -13 527 226 121 62 chr1 177807321 177807542 -104386122 + L1ME4a LINE L1 5677 5922 -199 906 201 186 4 chr1 177807672 177807941 -104385723 - MER5C DNA MER1_type -6 318 1 242 133 0 0 chr1 177807983 177808028 -104385636 + Alu SINE Alu 89 133 0 326 104 0 0 chr1 177808169 177808217 -104385447 - FLAM SINE Alu -4 129 82 29 0 0 0 chr1 177808217 177808246 -104385418 + AT_rich Low_complexity Low_complexity 1 29 0 2399 79 3 0 chr1 177808246 177808536 -104385128 - AluSp SINE Alu -22 291 1 2191 97 48 3 chr1 177808536 177808824 -104384840 - AluSx SINE Alu -10 302 1 575 161 11 0 chr1 177808826 177808919 -104384745 - AluJ/FLAM SINE Alu -218 94 1 4604 154 66 6 chr1 177809089 177809853 -104383811 - L1MB7 LINE L1 -5 6179 5350 1814 170 3 7 chr1 177809853 177810147 -104383517 + AluJb SINE Alu 1 293 -19 4604 154 66 6 chr1 177810147 177810316 -104383348 - L1MB7 LINE L1 -834 5350 5193 2392 103 3 0 chr1 177810316 177810627 -104383037 - AluSx SINE Alu 0 312 1 859 128 0 16 chr1 177810640 177810765 -104382899 - FLAM_C SINE Alu -20 123 1 827 208 22 0 chr1 177810765 177810943 -104382721 - L1MB7 LINE L1 -1100 5046 4865 243 322 62 48 chr1 177811066 177811212 -104382452 + L3 LINE CR1 1079 1226 -351 479 241 48 48 chr1 177811238 177811383 -104382281 + MIR SINE MIR 46 190 -72 225 0 0 0 chr1 177812591 177812616 -104381048 + (A)n Simple_repeat Simple_repeat 1 25 0 308 216 128 10 chr1 177813577 177813679 -104379985 - MIR SINE MIR -96 166 53 2104 94 4 0 chr1 177813683 177813958 -104379706 - AluSg SINE Alu -1 309 34 745 316 80 73 chr1 177814077 177814771 -104378893 + L1MCa LINE L1 1920 3727 -2699 24 0 0 0 chr1 177814771 177814795 -104378869 + AT_rich Low_complexity Low_complexity 1 24 0 796 276 55 0 chr1 177814814 177815031 -104378633 - MIR SINE MIR -31 231 3 594 173 256 0 chr1 177815388 177815544 -104378120 + MIR SINE MIR 13 208 -54 224 299 131 9 chr1 177816840 177816947 -104376717 - L2 LINE L2 -570 2744 2625 2040 151 3 3 chr1 177817194 177817505 -104376159 + AluSx SINE Alu 1 311 -1 2301 99 7 0 chr1 177818139 177818432 -104375232 - AluSx SINE Alu -17 295 1 322 252 9 84 chr1 177822505 177822612 -104371052 - MIR SINE MIR -72 190 92 251 164 218 0 chr1 177823232 177823287 -104370377 - MER94 DNA DNA -67 67 1 2552 66 3 3 chr1 177823829 177824134 -104369530 - AluSp SINE Alu -8 305 1 443 262 0 33 chr1 177824368 177824490 -104369174 + MIR SINE MIR 101 218 -44 480 270 56 39 chr1 177824706 177824939 -104368725 + L1MC4 LINE L1 7021 7200 -761 2293 106 0 7 chr1 177825179 177825480 -104368184 - AluSx SINE Alu -9 303 5 1329 157 0 14 chr1 177825487 177825697 -104367967 - AluJb SINE Alu -12 300 94 355 214 84 128 chr1 177825702 177826202 -104367462 + L1MC5 LINE L1 7301 7778 -183 2312 55 55 14 chr1 177826496 177826789 -104366875 - AluY SINE Alu -6 305 1 200 35 35 0 chr1 177827133 177827162 -104366502 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1474 170 61 0 chr1 177827232 177827479 -104366185 + AluJb SINE Alu 7 268 -44 1835 124 57 25 chr1 177827490 177827773 -104365891 - AluJb SINE Alu -16 296 5 490 212 11 123 chr1 177828852 177829031 -104364633 + MER5A DNA MER1_type 1 159 -30 367 328 111 30 chr1 177829842 177830450 -104363214 - L2 LINE L2 -30 3242 2581 2404 94 0 0 chr1 177830450 177830758 -104362906 + AluSx SINE Alu 1 308 -4 266 255 278 90 chr1 177831522 177831698 -104361966 - MIR SINE MIR -7 255 114 2371 78 3 23 chr1 177831698 177832004 -104361660 - AluY SINE Alu -11 300 1 2327 118 0 6 chr1 177832004 177832317 -104361347 - AluSx SINE Alu -1 311 1 266 255 278 90 chr1 177832317 177832351 -104361313 - MIR SINE MIR -147 115 4 503 322 137 10 chr1 177832398 177832911 -104360753 - L2 LINE L2 -780 2534 1872 1201 214 157 53 chr1 177833069 177833488 -104360176 + MER34C LTR ERV1 3 377 -208 3117 148 18 61 chr1 177833488 177833705 -104359959 + MER7C DNA MER2_type 3 228 -2800 1957 158 7 16 chr1 177833705 177834015 -104359649 + AluJb SINE Alu 1 307 -5 3117 148 18 61 chr1 177834015 177834140 -104359524 + MER7C DNA MER2_type 228 357 -2671 2191 107 28 0 chr1 177834140 177834431 -104359233 - AluSx SINE Alu -9 303 5 3117 148 18 61 chr1 177834431 177834714 -104358950 + MER7C DNA MER2_type 357 602 0 1201 214 157 53 chr1 177834714 177834822 -104358842 + MER34C LTR ERV1 377 585 0 245 229 21 0 chr1 177834827 177834875 -104358789 + L2 LINE L2 3204 3252 -20 252 0 0 0 chr1 177835198 177835226 -104358438 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 303 93 0 0 chr1 177835225 177835268 -104358396 + (TG)n Simple_repeat Simple_repeat 1 43 0 222 37 0 0 chr1 177835267 177835294 -104358370 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 1674 179 43 13 chr1 177835347 177835454 -104358210 + AluJb SINE Alu 2 104 -208 342 0 0 0 chr1 177835454 177835492 -104358172 + (TAA)n Simple_repeat Simple_repeat 3 40 0 1674 179 43 13 chr1 177835492 177835685 -104357979 + AluJb SINE Alu 104 311 -1 2345 99 3 0 chr1 177835752 177836055 -104357609 + AluSx SINE Alu 1 304 -8 2230 92 0 27 chr1 177836059 177836354 -104357310 + AluSx SINE Alu 5 291 -21 459 267 52 0 chr1 177836356 177836472 -104357192 + MIR3 SINE MIR 50 171 -37 342 243 0 0 chr1 177837247 177837317 -104356347 + L2 LINE L2 3194 3263 -9 2360 74 7 0 chr1 177837458 177837743 -104355921 - AluSg SINE Alu -23 287 1 929 98 0 0 chr1 177837769 177837902 -104355762 - L1MB3 LINE L1 -8 6175 6043 309 317 146 38 chr1 177837902 177838189 -104355475 - L2 LINE L2 -9 3263 2946 381 273 48 35 chr1 177839616 177839795 -104353869 + MIR3 SINE MIR 3 177 -67 205 271 214 0 chr1 177840507 177840577 -104353087 - L2 LINE L2 0 3272 3188 223 240 53 40 chr1 177841511 177841586 -104352078 + MIR SINE MIR 18 93 -115 200 273 0 0 chr1 177842520 177842564 -104351100 - L2 LINE L2 -20 3252 3209 764 226 71 49 chr1 177844174 177844400 -104349264 - MIR SINE MIR -19 243 13 847 131 0 31 chr1 177844521 177844651 -104349013 + FLAM_C SINE Alu 1 126 -7 1692 146 44 37 chr1 177844810 177845104 -104348560 - AluJo SINE Alu -16 296 1 2047 124 0 0 chr1 177845114 177845430 -104348234 - AluSx SINE Alu 0 316 1 2068 147 0 7 chr1 177845648 177845948 -104347716 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 177845996 177846018 -104347646 + AT_rich Low_complexity Low_complexity 1 22 0 1880 188 85 25 chr1 177846254 177846488 -104347176 - MER34 LTR ERV1 -1 541 322 2113 141 0 0 chr1 177846488 177846792 -104346872 + AluJb SINE Alu 1 304 -8 1880 188 85 25 chr1 177846792 177846993 -104346671 - MER34 LTR ERV1 -220 322 80 2263 97 0 37 chr1 177846993 177847314 -104346350 - AluSx SINE Alu -3 309 1 479 50 0 0 chr1 177847314 177847374 -104346290 - AluSg/x SINE Alu -175 135 76 1310 178 0 9 chr1 177847374 177847588 -104346076 - AluSx SINE Alu -100 212 1 * 1315 139 5 0 chr1 177847588 177847781 -104345883 + AluJo SINE Alu 104 297 -15 552 191 134 97 chr1 177847796 177848109 -104345555 - MLT1A2 LTR MaLR 0 365 1 33 0 0 0 chr1 177849038 177849071 -104344593 + GC_rich Low_complexity Low_complexity 1 33 0 459 254 66 8 chr1 177850327 177850449 -104343215 - MIR SINE MIR -63 145 17 216 315 99 18 chr1 177853477 177853588 -104340076 - L2 LINE L2 -3 3269 3150 492 296 128 66 chr1 177854112 177854778 -104338886 - L2 LINE L2 -5 3267 2550 395 301 92 31 chr1 177854853 177855016 -104338648 + MIR3 SINE MIR 25 197 -11 548 161 152 9 chr1 177856458 177856570 -104337094 + FLAM_A SINE Alu 1 128 -5 915 156 7 0 chr1 177856572 177856707 -104336957 + AluJb SINE Alu 1 136 -176 698 249 127 0 chr1 177856837 177857058 -104336606 - MIR SINE MIR -2 260 12 2107 106 7 40 chr1 177857356 177857657 -104336007 - AluJo SINE Alu -10 302 12 482 229 108 102 chr1 177857668 177857834 -104335830 - MIR SINE MIR -66 196 30 2235 102 3 10 chr1 177857845 177858150 -104335514 - AluSx SINE Alu -9 303 1 1799 165 0 20 chr1 177859215 177859518 -104334146 - AluJb SINE Alu -15 297 1 227 353 33 25 chr1 177859518 177859640 -104334024 - L2 LINE L2 -10 3262 3140 1041 130 43 72 chr1 177859709 177859917 -104333747 + AluJo SINE Alu 6 207 -105 752 164 0 0 chr1 177860495 177860623 -104333041 - FLAM_A SINE Alu -4 129 2 200 196 0 18 chr1 177860787 177860843 -104332821 + (TA)n Simple_repeat Simple_repeat 1 55 0 293 318 110 85 chr1 177861004 177861240 -104332424 - L2 LINE L2 0 3272 3031 622 279 28 21 chr1 177861389 177861568 -104332096 + L1ME4a LINE L1 5652 5835 -286 2364 81 27 0 chr1 177861568 177861864 -104331800 - AluSc SINE Alu -5 304 1 622 279 28 21 chr1 177861864 177861971 -104331693 + L1ME4a LINE L1 5835 5940 -181 1327 155 14 30 chr1 177861973 177862261 -104331403 + L1M4 LINE L1 4388 4672 -1474 2289 128 0 0 chr1 177862261 177862573 -104331091 + AluSx SINE Alu 1 312 0 917 130 0 0 chr1 177862587 177862710 -104330954 + AluSq/x SINE Alu 1 123 -189 2258 97 10 16 chr1 177862885 177863194 -104330470 + AluSg SINE Alu 1 307 -3 254 208 245 0 chr1 177863247 177863353 -104330311 + MIR SINE MIR 76 207 -55 367 224 41 0 chr1 177865016 177865114 -104328550 + U13 snRNA snRNA 1 102 -2 1011 109 0 15 chr1 177865187 177865324 -104328340 + AluSq/x SINE Alu 1 135 -177 2259 101 20 7 chr1 177865325 177865631 -104328033 + AluSx SINE Alu 1 310 -2 180 152 0 0 chr1 177865735 177865768 -104327896 + (CA)n Simple_repeat Simple_repeat 1 33 0 2504 95 0 0 chr1 177867287 177867591 -104326073 - AluSq SINE Alu -9 304 1 2432 102 0 0 chr1 177867791 177868094 -104325570 + AluSx SINE Alu 1 303 -9 276 307 85 20 chr1 177868097 177868250 -104325414 + MIR SINE MIR 50 212 -50 754 138 0 36 chr1 177868251 177868389 -104325275 + FLAM_C SINE Alu 1 133 0 276 149 0 0 chr1 177868826 177868873 -104324791 + (CA)n Simple_repeat Simple_repeat 1 47 0 464 244 106 19 chr1 177870498 177870658 -104323006 - MIR3 SINE MIR -26 182 9 277 345 31 31 chr1 177871428 177871598 -104322066 + MIR SINE MIR 18 191 -63 317 175 0 0 chr1 177871903 177871960 -104321704 + Alu SINE Alu 246 302 0 2929 97 29 25 chr1 177871977 177872461 -104321203 + L1MA6 LINE L1 5814 6299 -1 2026 111 30 24 chr1 177873579 177873745 -104319919 - AluSx SINE Alu -13 299 129 2534 76 0 0 chr1 177873745 177874046 -104319618 - AluY SINE Alu -10 301 1 2026 111 30 24 chr1 177874046 177874176 -104319488 - AluSx SINE Alu -183 129 1 293 333 135 0 chr1 177876078 177876219 -104317445 - MIR SINE MIR -97 165 6 509 262 110 26 chr1 177877216 177877407 -104316257 - MIR SINE MIR -3 259 53 310 370 14 36 chr1 177877644 177877863 -104315801 - L2 LINE L2 -422 2892 2679 2110 143 0 0 chr1 177877876 177878176 -104315488 - AluSx SINE Alu -12 300 1 243 114 0 0 chr1 177878218 177878253 -104315411 + HsTC2 DNA Tc2 1864 1898 0 517 179 13 90 chr1 177878256 177878344 -104315320 - MIR SINE MIR -73 189 118 1991 147 0 10 chr1 177878344 177878666 -104314998 + AluJb SINE Alu 1 312 0 517 179 13 90 chr1 177878666 177878732 -104314932 - MIR SINE MIR -144 118 48 2033 153 3 0 chr1 177881189 177881484 -104312180 - AluJo SINE Alu -16 296 1 544 305 126 14 chr1 177882257 177882480 -104311184 - MIR SINE MIR -1 261 14 546 63 0 0 chr1 177883044 177883123 -104310541 + (CA)n Simple_repeat Simple_repeat 2 80 0 535 173 34 123 chr1 177883123 177883302 -104310362 - FAM SINE Alu -12 163 1 1016 171 24 81 chr1 177883404 177883650 -104310014 - MIR SINE MIR -25 237 6 1625 168 42 21 chr1 177884728 177884864 -104308800 + AluJb SINE Alu 1 133 -179 2159 125 0 31 chr1 177884864 177885184 -104308480 + AluSx SINE Alu 1 310 -2 1625 168 42 21 chr1 177885184 177885332 -104308332 + AluJb SINE Alu 133 291 -21 304 212 0 35 chr1 177886671 177886756 -104306908 - MIR SINE MIR -6 256 175 * 352 240 0 0 chr1 177886729 177886804 -104306860 + MIR SINE MIR 188 262 0 499 267 145 0 chr1 177886811 177886983 -104306681 - MIR SINE MIR -64 198 2 462 342 11 16 chr1 177887021 177887205 -104306459 - MIR SINE MIR -60 202 20 2004 242 153 2 chr1 177887850 177888478 -104305186 + L2 LINE L2 1996 2718 -596 1995 144 0 0 chr1 177888478 177888755 -104304909 + AluJo SINE Alu 2 278 -34 336 143 0 0 chr1 177888755 177888804 -104304860 + AluJ/FRAM SINE Alu 228 276 -26 525 117 0 0 chr1 177888804 177888881 -104304783 + AluJ/FRAM SINE Alu 226 302 -10 761 251 162 22 chr1 177888882 177889253 -104304411 + L2 LINE L2 2708 3184 -129 2389 109 3 0 chr1 177889253 177889565 -104304099 - AluSp SINE Alu 0 313 1 761 251 162 22 chr1 177889565 177889717 -104303947 + L2 LINE L2 3184 3313 0 307 241 80 62 chr1 177890237 177890349 -104303315 - MIR SINE MIR -21 241 128 2088 131 24 0 chr1 177890460 177890751 -104302913 + AluSx SINE Alu 1 298 -14 469 147 0 0 chr1 177890920 177890995 -104302669 - AluS SINE Alu -11 298 224 234 0 0 0 chr1 177891112 177891138 -104302526 + (A)n Simple_repeat Simple_repeat 1 26 0 189 74 0 0 chr1 177891306 177891333 -104302331 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 219 224 0 0 chr1 177891414 177891463 -104302201 - MIR SINE MIR -1 261 213 2136 120 3 19 chr1 177891703 177892011 -104301653 - AluSq SINE Alu -7 306 4 856 206 0 39 chr1 177892064 177892244 -104301420 - FRAM SINE Alu -4 172 1 570 219 27 59 chr1 177892636 177892759 -104300905 - LTR37B LTR ERV1 -54 414 300 2358 91 0 7 chr1 177892759 177893057 -104300607 + AluSg SINE Alu 1 296 -14 570 219 27 59 chr1 177893057 177893152 -104300512 - LTR37B LTR ERV1 -168 300 203 2135 153 0 3 chr1 177893324 177893637 -104300027 + AluSx SINE Alu 1 312 0 2053 107 0 0 chr1 177894033 177894294 -104299370 - AluSx SINE Alu -14 298 38 2051 139 12 66 chr1 177894374 177894746 -104298918 - MER31A LTR ERV1 0 485 135 2063 126 10 3 chr1 177894746 177895039 -104298625 + AluJb SINE Alu 1 295 -17 2051 139 12 66 chr1 177895039 177895076 -104298588 - MER31A LTR ERV1 -350 135 98 1626 178 68 10 chr1 177895076 177895234 -104298430 - AluJb SINE Alu -2 310 163 2043 106 72 0 chr1 177895234 177895526 -104298138 - AluSq SINE Alu 0 313 1 1626 178 68 10 chr1 177895526 177895660 -104298004 - AluJb SINE Alu -149 163 1 1237 170 50 0 chr1 177895660 177895901 -104297763 - L1M4 LINE L1 -1228 4918 4666 1341 111 5 5 chr1 177895901 177896091 -104297573 - AluSg/x SINE Alu -2 310 121 2128 131 10 10 chr1 177896866 177897178 -104296486 + AluSx SINE Alu 1 312 0 193 256 13 77 chr1 177897272 177897350 -104296314 - L2 LINE L2 0 3313 3241 191 378 74 7 chr1 177897859 177897994 -104295670 + MIR SINE MIR 28 171 -91 182 352 11 23 chr1 177898460 177898548 -104295116 + L3b LINE CR1 1309 1395 -188 429 286 9 0 chr1 177898576 177898688 -104294976 - MIR SINE MIR -66 142 30 194 174 22 0 chr1 177898725 177898771 -104294893 + GA-rich Low_complexity Low_complexity 1 47 0 350 205 26 0 chr1 177899651 177899729 -104293935 + MIR SINE MIR 70 149 -113 551 301 96 98 chr1 177899731 177899941 -104293723 + L1MC4a LINE L1 6110 6319 -1489 1920 135 0 0 chr1 177899941 177900223 -104293441 + AluSx SINE Alu 14 295 -17 551 301 96 98 chr1 177900223 177900442 -104293222 + L1MC4a LINE L1 6319 6540 -1268 2123 124 7 0 chr1 177900442 177900749 -104292915 - AluSx SINE Alu -2 310 2 551 301 96 98 chr1 177900749 177900799 -104292865 + L1MC4a LINE L1 6540 6589 -1219 627 170 67 7 chr1 177900799 177900934 -104292730 + L1MC5 LINE L1 6637 6779 -1182 780 157 8 0 chr1 177900965 177901086 -104292578 + AluJo SINE Alu 1 122 -190 671 35 0 11 chr1 177901087 177901174 -104292490 + (GAAA)n Simple_repeat Simple_repeat 3 88 0 1071 89 0 0 chr1 177901274 177901409 -104292255 - AluSq/x SINE Alu -177 135 1 465 181 8 53 chr1 177901620 177901753 -104291911 + L1ME3 LINE L1 6034 6160 -2 1970 119 0 29 chr1 177901775 177902086 -104291578 + AluJb SINE Alu 1 302 -10 958 156 6 0 chr1 177902089 177902249 -104291415 + AluJo SINE Alu 132 292 -20 2468 65 0 0 chr1 177902258 177902565 -104291099 + AluY SINE Alu 1 307 -4 182 313 94 56 chr1 177902750 177902910 -104290754 - L3b LINE CR1 -198 1385 1220 189 0 0 0 chr1 177903164 177903185 -104290479 + (CAGA)n Simple_repeat Simple_repeat 3 23 0 420 309 144 16 chr1 177904163 177904351 -104289313 + MIR SINE MIR 51 262 0 243 0 0 0 chr1 177905006 177905033 -104288631 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 297 0 0 0 chr1 177905032 177905065 -104288599 + (GA)n Simple_repeat Simple_repeat 2 34 0 304 269 51 86 chr1 177907061 177907259 -104286405 - MIR SINE MIR -17 245 45 212 0 0 35 chr1 177908594 177908623 -104285041 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 230 310 11 11 chr1 177908746 177908833 -104284831 - L3b LINE CR1 -199 1384 1298 194 256 244 12 chr1 177909813 177909895 -104283769 - MIR SINE MIR -74 188 88 1713 178 3 7 chr1 177910803 177911096 -104282568 - AluJb SINE Alu -16 296 5 309 109 0 0 chr1 177911522 177911568 -104282096 + (TAG)n Simple_repeat Simple_repeat 3 48 0 1912 143 28 0 chr1 177912065 177912352 -104281312 + AluSx SINE Alu 1 295 -17 583 273 182 25 chr1 177912420 177912706 -104280958 + L2 LINE L2 2981 3311 -2 249 230 0 0 chr1 177913705 177913779 -104279885 + GA-rich Low_complexity Low_complexity 1 74 0 219 321 0 0 chr1 177914954 177915035 -104278629 + (TCTCTG)n Simple_repeat Simple_repeat 4 84 0 180 250 0 79 chr1 177917311 177917387 -104276277 - MIR SINE MIR -81 127 58 227 293 192 42 chr1 177917919 177918086 -104275578 + MIR SINE MIR 59 250 -12 208 342 18 9 chr1 177918583 177918697 -104274967 + (CTCA)n Simple_repeat Simple_repeat 2 116 0 235 284 6 71 chr1 177919251 177919434 -104274230 + C-rich Low_complexity Low_complexity 1 171 0 292 350 146 0 chr1 177920223 177920360 -104273304 + MIR3 SINE MIR 41 197 -11 306 194 0 0 chr1 177921826 177921893 -104271771 + (TG)n Simple_repeat Simple_repeat 1 67 0 324 0 0 0 chr1 177923000 177923036 -104270628 + (TG)n Simple_repeat Simple_repeat 2 37 0 191 322 17 0 chr1 177923766 177923825 -104269839 - L3b LINE CR1 -200 1383 1324 246 115 49 16 chr1 177923870 177923931 -104269733 + GA-rich Low_complexity Low_complexity 2 64 0 1834 152 3 13 chr1 177924122 177924425 -104269239 - AluJb SINE Alu -12 300 1 1809 160 3 22 chr1 177925197 177925515 -104268149 + AluJo SINE Alu 1 312 0 203 200 22 0 chr1 177926484 177926529 -104267135 + (CAG)n Simple_repeat Simple_repeat 3 48 0 307 253 84 12 chr1 177926813 177926896 -104266768 - L2 LINE L2 0 3272 3184 286 310 336 2 chr1 177926934 177927454 -104266210 + L2 LINE L2 2020 2713 -601 2096 103 16 13 chr1 177927456 177927767 -104265897 + AluSx SINE Alu 1 312 0 1051 131 6 6 chr1 177927767 177927927 -104265737 + AluSg/x SINE Alu 132 291 -19 718 292 49 60 chr1 177928035 177928614 -104265050 + L2 LINE L2 2703 3270 -2 252 325 61 9 chr1 177929768 177929882 -104263782 - MIR3 SINE MIR -27 181 62 21 36 0 0 chr1 177930253 177930281 -104263383 + GC_rich Low_complexity Low_complexity 1 28 0 209 182 0 0 chr1 177931739 177931772 -104261892 + polypyrimidine Low_complexity Low_complexity 2 34 0 1712 149 0 8 chr1 177936028 177936315 -104257349 - AluSg SINE Alu 0 335 51 260 253 123 0 chr1 177936862 177937024 -104256640 + L1ME4a LINE L1 5939 6120 -1 343 217 36 90 chr1 177937191 177937240 -104256424 + L1MC4a LINE L1 5733 5783 -2025 1517 103 5 0 chr1 177937240 177937454 -104256210 + L1PA15 LINE L1 5948 6162 -3 2133 121 3 3 chr1 177937458 177937765 -104255899 + AluSc SINE Alu 1 307 -2 343 217 36 90 chr1 177937765 177937876 -104255788 + L1MC4a LINE L1 5786 5889 -1919 2329 73 0 7 chr1 177937880 177938181 -104255483 + AluSp SINE Alu 1 299 -14 528 187 0 0 chr1 177938181 177938272 -104255392 + FLAM SINE Alu 39 129 -14 538 270 54 37 chr1 177938296 177938648 -104255016 + L1MC5 LINE L1 7524 7881 -80 2194 102 7 0 chr1 177938648 177938952 -104254712 - AluSg SINE Alu -4 306 1 316 301 45 23 chr1 177939542 177939675 -104253989 - MIR3 SINE MIR -65 143 8 648 486 90 7 chr1 177939840 177940128 -104253536 + AluSq SINE Alu 1 312 -1 404 177 152 0 chr1 177940165 177940244 -104253420 + FLAM_A SINE Alu 36 126 -16 670 131 0 0 chr1 177940253 177940352 -104253312 + AluY SINE Alu 205 303 -8 29 28 0 0 chr1 177940405 177940441 -104253223 + AT_rich Low_complexity Low_complexity 1 36 0 1820 149 14 27 chr1 177940542 177940838 -104252826 + AluJb SINE Alu 1 292 -20 258 377 39 52 chr1 177940931 177941162 -104252502 - L2 LINE L2 -367 2947 2720 985 214 0 33 chr1 177941201 177941462 -104252202 + AluJo SINE Alu 84 312 0 432 356 57 6 chr1 177943364 177943541 -104250123 + L3 LINE CR1 887 1072 -505 495 297 49 16 chr1 177943594 177943779 -104249885 + MIR SINE MIR 63 253 -9 317 363 144 4 chr1 177943825 177944095 -104249569 + L3 LINE CR1 1233 1540 -37 886 211 0 0 chr1 177944095 177944261 -104249403 + AluJb SINE Alu 145 310 -2 374 321 18 0 chr1 177944363 177944475 -104249189 + L2 LINE L2 3200 3313 0 2395 87 0 0 chr1 177944559 177944868 -104248796 - AluSg SINE Alu -1 309 1 304 288 87 7 chr1 177944871 177945014 -104248650 - MIR3 SINE MIR -45 163 12 252 240 67 0 chr1 177945681 177945756 -104247908 - MIR3 SINE MIR -17 191 112 1288 109 0 31 chr1 177945981 177946155 -104247509 - AluSg/x SINE Alu -6 304 126 2183 95 7 3 chr1 177946155 177946449 -104247215 - AluY SINE Alu -16 295 1 2159 105 3 13 chr1 177946449 177946754 -104246910 - AluSc SINE Alu -7 302 1 1288 109 0 31 chr1 177946754 177946771 -104246893 - AluSg/x SINE Alu -182 128 118 485 323 69 83 chr1 177946820 177947428 -104246236 - L1M4 LINE L1 -1642 4504 2928 306 362 95 45 chr1 177947112 177947471 -104246193 + L1MCa LINE L1 1922 2298 -4128 * 184 99 0 86 chr1 178149105 178149186 -104044478 + (CAAAA)n Simple_repeat Simple_repeat 4 77 0 320 156 34 56 chr1 178149192 178149371 -104044293 + (CACAA)n Simple_repeat Simple_repeat 3 177 0 1105 147 16 0 chr1 178149493 178149684 -104043980 - L1MB4 LINE L1 -121 6059 5866 274 244 6 122 chr1 178149688 178149860 -104043804 - L1ME3 LINE L1 -55 6107 5959 2169 106 33 0 chr1 178149861 178150164 -104043500 + AluSq SINE Alu 1 313 0 4036 118 6 33 chr1 178150165 178150375 -104043289 + L1PB2 LINE L1 5293 5507 -644 2140 98 0 18 chr1 178150375 178150660 -104043004 + AluSx SINE Alu 6 285 -27 192 40 0 0 chr1 178150665 178150690 -104042974 + (CA)n Simple_repeat Simple_repeat 2 26 0 4036 118 6 33 chr1 178150690 178151170 -104042494 + L1PB2 LINE L1 5511 5970 -181 189 271 186 42 chr1 178152193 178152547 -104041117 + L2 LINE L2 2855 3259 -13 668 264 34 47 chr1 178152548 178152783 -104040881 + L3 LINE CR1 1308 1539 -38 925 228 30 0 chr1 178152788 178152990 -104040674 - MER63A DNA MER1_type 0 210 3 516 172 0 0 chr1 178153529 178153616 -104040048 + AluJ/FRAM SINE Alu 221 307 -5 2358 70 40 3 chr1 178154103 178154403 -104039261 + AluY SINE Alu 1 311 0 880 124 8 0 chr1 178154428 178154557 -104039107 + FLAM_C SINE Alu 2 131 -2 271 125 21 21 chr1 178155663 178155711 -104037953 + AluY SINE Alu 119 166 -135 426 244 15 23 chr1 178156585 178156716 -104036948 + MLT1J LTR MaLR 12 141 -370 236 119 24 0 chr1 178156731 178156773 -104036891 - Alu SINE Alu -257 45 3 218 196 71 0 chr1 178156932 178157044 -104036620 + (TCTCTG)n Simple_repeat Simple_repeat 2 121 0 575 128 0 23 chr1 178158693 178158779 -104034885 - FRAM SINE Alu -17 159 76 498 280 118 46 chr1 178159439 178159803 -104033861 - L1MEc LINE L1 -2866 3349 833 246 184 27 34 chr1 178159919 178160066 -104033598 + (CAGAGA)n Simple_repeat Simple_repeat 1 146 0 204 228 0 0 chr1 178160752 178160809 -104032855 + (CA)n Simple_repeat Simple_repeat 2 58 0 382 304 99 12 chr1 178161203 178161446 -104032218 - L2 LINE L2 -712 2602 2339 847 150 0 50 chr1 178161479 178161619 -104032045 - FLAM_C SINE Alu 0 133 1 48 18 0 0 chr1 178161729 178161784 -104031880 + AT_rich Low_complexity Low_complexity 1 55 0 1070 113 0 0 chr1 178161806 178161947 -104031717 - AluJb SINE Alu -171 141 1 232 388 20 0 chr1 178162640 178162738 -104030926 - MIR SINE MIR -62 146 47 396 135 68 26 chr1 178163461 178163547 -104030117 + L1M4 LINE L1 5554 5643 -531 246 313 0 12 chr1 178163686 178163766 -104029898 - AluJb SINE Alu -175 127 49 1606 184 26 29 chr1 178163767 178163938 -104029726 - AluJo SINE Alu -3 309 138 2510 64 0 0 chr1 178163938 178164234 -104029430 - AluSg SINE Alu -14 296 1 1606 184 26 29 chr1 178164234 178164372 -104029292 - AluJo SINE Alu -174 138 1 1736 148 0 58 chr1 178164497 178164807 -104028857 + AluJo SINE Alu 1 292 -20 283 320 68 10 chr1 178165521 178165624 -104028040 - MIR SINE MIR -84 124 16 507 262 262 0 chr1 178165694 178165881 -104027783 + MIR SINE MIR 20 255 -7 3349 136 67 28 chr1 178166349 178167003 -104026661 - L1MA7 LINE L1 0 6291 5612 1613 137 0 0 chr1 178167004 178167223 -104026441 - AluJb SINE Alu -8 304 86 2341 82 3 3 chr1 178167234 178167525 -104026139 - AluSq SINE Alu -22 291 1 234 0 0 0 chr1 178167530 178167556 -104026108 + (TA)n Simple_repeat Simple_repeat 2 27 0 1014 161 0 75 chr1 178167558 178167757 -104025907 - AluJ SINE Alu 0 312 129 47 26 0 26 chr1 178167757 178167810 -104025854 + AT_rich Low_complexity Low_complexity 1 53 -21 1922 125 10 28 chr1 178167810 178168098 -104025566 - AluSx SINE Alu -29 283 1 47 26 0 26 chr1 178168098 178168120 -104025544 + AT_rich Low_complexity Low_complexity 53 74 0 1036 123 82 29 chr1 178168154 178168173 -104025491 - AluSg/x SINE Alu 0 312 295 667 146 0 126 chr1 178168173 178168324 -104025340 - AluJo/FLAM SINE Alu -170 132 1 1036 123 82 29 chr1 178168324 178168474 -104025190 - AluSg/x SINE Alu -17 295 134 2267 107 0 7 chr1 178168475 178168783 -104024881 - AluSx SINE Alu -1 311 6 257 162 29 15 chr1 178168801 178168869 -104024795 + T-rich Low_complexity Low_complexity 3 71 0 1112 179 26 0 chr1 178168872 178169062 -104024602 - AluJb SINE Alu 0 312 118 255 170 0 0 chr1 178169062 178169109 -104024555 - L1MA7 LINE L1 -702 5598 5552 2092 129 23 3 chr1 178169154 178169457 -104024207 - AluSx SINE Alu -3 309 1 217 357 36 0 chr1 178169789 178169873 -104023791 - MIR3 SINE MIR -11 197 111 222 347 93 45 chr1 178170337 178170628 -104023036 + L3b LINE CR1 1249 1553 -30 874 205 84 84 chr1 178171132 178171342 -104022322 - MIR SINE MIR -6 256 44 2367 68 7 3 chr1 178171342 178171634 -104022030 - AluSp SINE Alu -20 293 1 874 205 84 84 chr1 178171634 178171672 -104021992 - MIR SINE MIR -217 45 8 2198 105 14 0 chr1 178171896 178172191 -104021473 + AluSx SINE Alu 2 300 -12 270 73 0 0 chr1 178172197 178172238 -104021426 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 2500 66 0 22 chr1 178172358 178172676 -104020988 - AluY SINE Alu 0 311 1 2261 88 3 14 chr1 178173659 178173953 -104019711 + AluSg1 SINE Alu 1 291 -18 2311 105 0 3 chr1 178174245 178174540 -104019124 - AluSg SINE Alu -16 294 1 432 0 0 0 chr1 178175880 178175928 -104017736 + (TA)n Simple_repeat Simple_repeat 2 49 0 937 97 14 14 chr1 178175933 178176077 -104017587 - L1PA15 LINE L1 0 6165 6022 1224 105 0 35 chr1 178176080 178176252 -104017412 - AluSg/x SINE Alu -13 297 132 2004 157 3 13 chr1 178176252 178176564 -104017100 - AluSx SINE Alu -3 309 1 3410 105 42 4 chr1 178176567 178176761 -104016903 - L1PA15 LINE L1 -129 6036 5843 908 242 20 39 chr1 178176761 178177089 -104016575 - L1MC4 LINE L1 -1014 5132 4799 2226 105 3 13 chr1 178177089 178177395 -104016269 - AluSx SINE Alu -9 303 1 2323 106 0 0 chr1 178177397 178177699 -104015965 - AluSx SINE Alu -10 302 1 908 242 20 39 chr1 178177699 178177785 -104015879 - L1MC4 LINE L1 -1013 5133 5047 25 0 0 0 chr1 178178049 178178074 -104015590 + AT_rich Low_complexity Low_complexity 1 25 0 445 244 128 19 chr1 178178112 178178268 -104015396 + MIR SINE MIR 86 258 -4 396 265 127 57 chr1 178178293 178178576 -104015088 + L3 LINE CR1 1268 1570 -7 2353 89 3 0 chr1 178178770 178179062 -104014602 + AluSq SINE Alu 1 293 -20 1160 238 30 107 chr1 178180326 178180496 -104013168 - MLT1J LTR MaLR 0 511 329 796 150 8 15 chr1 178180496 178180629 -104013035 - FLAM_C SINE Alu 0 133 2 1160 238 30 107 chr1 178180629 178180868 -104012796 - MLT1J LTR MaLR -182 329 152 2207 120 3 22 chr1 178180868 178181184 -104012480 - AluSx SINE Alu -2 310 1 1160 238 30 107 chr1 178181184 178181315 -104012349 - MLT1J LTR MaLR -359 152 12 1021 162 12 12 chr1 178182189 178182356 -104011308 - AluJo SINE Alu -145 167 1 2342 113 3 0 chr1 178182376 178182686 -104010978 - AluSp SINE Alu -2 311 1 309 111 19 0 chr1 178182749 178182803 -104010861 - L1PB4 LINE L1 -13 6143 6089 303 175 0 0 chr1 178183637 178183694 -104009970 + CT-rich Low_complexity Low_complexity 1 57 0 1721 157 43 23 chr1 178183715 178184015 -104009649 - AluJb SINE Alu -6 306 1 196 233 23 81 chr1 178185390 178185476 -104008188 - L2 LINE L2 -49 3223 3143 384 183 0 14 chr1 178186299 178186370 -104007294 - Tigger2 DNA MER2_type 0 2718 2649 1241 171 18 28 chr1 178186371 178186588 -104007076 - AluJo SINE Alu -11 301 87 436 160 0 0 chr1 178186590 178186665 -104006999 - Tigger2 DNA MER2_type -61 2657 2583 345 161 0 0 chr1 178186671 178186727 -104006937 - Tigger2 DNA MER2_type -1862 856 801 464 100 0 0 chr1 178186741 178186801 -104006863 - AluSc SINE Alu -17 292 233 4174 138 54 17 chr1 178186801 178187004 -104006660 - Tigger2 DNA MER2_type -1928 790 596 2338 60 53 3 chr1 178187004 178187289 -104006375 + AluSg SINE Alu 1 299 -11 4174 138 54 17 chr1 178187289 178187847 -104005817 - Tigger2 DNA MER2_type -2122 596 1 215 331 83 25 chr1 178189549 178189670 -104003994 + L3 LINE CR1 1426 1553 -24 195 318 16 0 chr1 178190603 178190666 -104002998 + MIR3 SINE MIR 130 193 -15 2145 80 83 7 chr1 178191331 178191619 -104002045 - AluSx SINE Alu -1 311 2 257 340 131 13 chr1 178192330 178192483 -104001181 + MIR3 SINE MIR 19 189 -19 209 299 76 58 chr1 178192489 178192694 -104000970 - MIR SINE MIR -43 219 14 208 233 0 0 chr1 178193068 178193111 -104000553 + CT-rich Low_complexity Low_complexity 4 46 0 1428 153 116 40 chr1 178193539 178193660 -104000004 + AluJo SINE Alu 1 111 -201 2207 111 0 13 chr1 178193660 178193958 -103999706 - AluSx SINE Alu -18 294 1 1428 153 116 40 chr1 178193958 178194111 -103999553 + AluJo SINE Alu 111 296 -16 391 223 240 8 chr1 178195162 178195283 -103998381 + MIR3 SINE MIR 23 171 -37 773 246 6 6 chr1 178195293 178195464 -103998200 - MER117 DNA MER1_type -26 171 1 210 244 0 0 chr1 178195467 178195512 -103998152 + L3b LINE CR1 1535 1579 -4 566 281 142 44 chr1 178195899 178196308 -103997356 - L2 LINE L2 0 3272 2824 279 315 22 11 chr1 178196355 178196444 -103997220 - L2 LINE L2 -607 2707 2618 801 147 93 0 chr1 178196447 178196576 -103997088 + FRAM SINE Alu 1 141 -35 1885 162 3 14 chr1 178198471 178198768 -103994896 - AluJb SINE Alu -18 294 1 2170 102 3 3 chr1 178198955 178199250 -103994414 - AluSx SINE Alu -17 295 1 439 311 173 36 chr1 178199487 178199937 -103993727 + L2 LINE L2 2355 2866 -448 1650 262 183 24 chr1 178200049 178201059 -103992605 + L2 LINE L2 1875 3091 -222 181 295 19 76 chr1 178201060 178201165 -103992499 - L2 LINE L2 -697 2617 2519 395 263 15 106 chr1 178201178 178201376 -103992288 + L2 LINE L2 3112 3291 -22 207 371 79 21 chr1 178201446 178201586 -103992078 + L2 LINE L2 3106 3253 -19 317 186 12 47 chr1 178201587 178201673 -103991991 + AluYb8 SINE Alu 111 193 -115 904 116 0 7 chr1 178201859 178202005 -103991659 + AluSg/x SINE Alu 168 312 0 287 48 0 24 chr1 178205471 178205513 -103988151 + (TC)n Simple_repeat Simple_repeat 2 42 0 772 154 0 8 chr1 178205732 178205849 -103987815 + FLAM_C SINE Alu 3 118 -15 240 35 0 0 chr1 178205856 178205885 -103987779 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2248 101 0 0 chr1 178206070 178206366 -103987298 - AluSx SINE Alu -10 302 7 194 253 60 84 chr1 178206496 178206579 -103987085 - MIR SINE MIR -86 122 42 199 273 18 0 chr1 178206617 178206672 -103986992 - L2 LINE L2 -34 3279 3224 4307 116 19 6 chr1 178206773 178207438 -103986226 - L1PB2 LINE L1 -8 6143 5470 192 40 0 0 chr1 178207647 178207672 -103985992 + (TG)n Simple_repeat Simple_repeat 2 26 0 2047 98 0 18 chr1 178207677 178207962 -103985702 - AluSx SINE Alu -27 285 6 4763 171 13 47 chr1 178207967 178208163 -103985501 - L1PB2 LINE L1 -652 5499 5298 2153 105 6 13 chr1 178208163 178208478 -103985186 - AluSp SINE Alu 0 313 1 4763 171 13 47 chr1 178208478 178208906 -103984758 - L1PB2 LINE L1 -853 5298 4857 2096 137 0 0 chr1 178208906 178209206 -103984458 - AluJb SINE Alu -12 300 1 4763 171 13 47 chr1 178209206 178209729 -103983935 - L1PB2 LINE L1 -1294 4857 4407 207 0 0 0 chr1 178209729 178209752 -103983912 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4763 171 13 47 chr1 178209752 178210026 -103983638 - L1PB2 LINE L1 -1744 4407 4125 207 305 144 8 chr1 178210094 178210113 -103983551 - L2 LINE L2 -193 3079 3064 402 21 0 0 chr1 178210113 178210160 -103983504 + (TG)n Simple_repeat Simple_repeat 2 48 0 207 305 144 8 chr1 178210160 178210258 -103983406 - L2 LINE L2 -208 3064 2946 1251 192 0 17 chr1 178210995 178211235 -103982429 + AluJo SINE Alu 61 296 -16 180 0 0 0 chr1 178211269 178211289 -103982375 + (A)n Simple_repeat Simple_repeat 1 20 0 2100 314 73 80 chr1 178211291 178212640 -103981024 - ERVL LTR ERVL -384 5380 4023 236 176 235 0 chr1 178212640 178212708 -103980956 + MER96 DNA MER1_type? 1 84 -91 2100 314 73 80 chr1 178212708 178213551 -103980113 - ERVL LTR ERVL -1741 4023 3137 2292 81 7 0 chr1 178213551 178213848 -103979816 - AluSp SINE Alu -14 299 1 2100 314 73 80 chr1 178213848 178214035 -103979629 - ERVL LTR ERVL -2627 3137 2950 188 325 150 0 chr1 178214314 178214394 -103979270 - MIR3 SINE MIR -39 169 78 882 251 50 14 chr1 178214472 178214691 -103978973 - MIR SINE MIR -24 238 12 2267 64 40 3 chr1 178214951 178215248 -103978416 - AluY SINE Alu -3 308 1 1654 190 7 16 chr1 178215735 178215909 -103977755 - AluJo SINE Alu -5 307 136 2181 115 3 3 chr1 178215909 178216221 -103977443 - AluSx SINE Alu 0 312 1 1654 190 7 16 chr1 178216221 178216356 -103977308 - AluJo SINE Alu -176 136 1 925 129 0 8 chr1 178216640 178216772 -103976892 - FLAM_C SINE Alu -2 131 1 237 307 27 0 chr1 178216984 178217059 -103976605 + L2 LINE L2 3227 3303 -10 365 265 41 49 chr1 178217332 178217477 -103976187 + MIR SINE MIR 7 149 -63 428 312 174 30 chr1 178217634 178217967 -103975697 - L2 LINE L2 -6 3307 2927 2187 97 7 10 chr1 178218305 178218615 -103975049 - AluSx SINE Alu -3 309 1 267 308 66 0 chr1 178219118 178219209 -103974455 + MIR SINE MIR 85 181 -81 2306 98 7 0 chr1 178219210 178219516 -103974148 - AluSx SINE Alu -3 309 2 208 370 52 15 chr1 178219781 178219916 -103973748 - L2 LINE L2 -213 3059 2920 182 388 0 0 chr1 178220902 178220987 -103972677 - L2 LINE L2 -2 3270 3186 189 289 92 42 chr1 178221286 178221428 -103972236 - L2 LINE L2 -457 2857 2709 275 382 46 7 chr1 178221497 178221649 -103972015 + L2 LINE L2 3104 3261 -11 541 261 53 50 chr1 178221735 178221937 -103971727 + MIR SINE MIR 2 209 -53 2355 83 0 3 chr1 178221937 178222239 -103971425 + AluSx SINE Alu 1 301 -11 541 261 53 50 chr1 178222239 178222290 -103971374 + MIR SINE MIR 209 258 -4 575 159 209 37 chr1 178222327 178222490 -103971174 + LTR50 LTR ERVL 20 210 -585 650 225 144 19 chr1 178222509 178222780 -103970884 + LTR50 LTR ERVL 484 788 -7 250 333 0 0 chr1 178223200 178223272 -103970392 + MIR SINE MIR 71 142 -66 275 146 73 0 chr1 178223349 178223404 -103970260 + Alu SINE Alu 243 301 -1 330 236 212 15 chr1 178224120 178224379 -103969285 - L1ME4a LINE L1 -1 6120 5811 203 273 36 0 chr1 178228773 178228828 -103964836 + G-rich Low_complexity Low_complexity 3 59 0 396 317 82 27 chr1 178230554 178230737 -103962927 - MIR3 SINE MIR 0 208 16 296 262 12 0 chr1 178231253 178231337 -103962327 + (CCCTAA)n Simple_repeat Simple_repeat 3 87 0 301 340 34 0 chr1 178231454 178231601 -103962063 + (CCCTAA)n Simple_repeat Simple_repeat 3 154 0 673 173 9 0 chr1 178232570 178232680 -103960984 + MER81 DNA DNA 4 114 0 720 240 51 25 chr1 178236542 178236774 -103956890 + MER5A DNA MER1_type 1 156 -21 277 273 0 13 chr1 178236880 178236957 -103956707 - L3 LINE CR1 -641 936 861 22 35 0 0 chr1 178237548 178237577 -103956087 + GC_rich Low_complexity Low_complexity 1 29 0 244 284 95 0 chr1 178238287 178238361 -103955303 + MIR SINE MIR 65 145 -117 228 178 67 0 chr1 178238404 178238449 -103955215 - L2 LINE L2 -23 3249 3202 1856 151 35 0 chr1 178238579 178238864 -103954800 - AluJb SINE Alu -17 295 1 1957 141 0 3 chr1 178238871 178239175 -103954489 - AluSx SINE Alu -9 303 1 2165 112 0 28 chr1 178239198 178239519 -103954145 - AluSx SINE Alu 0 312 1 205 289 0 0 chr1 178239568 178239613 -103954051 - MIR SINE MIR -182 80 36 714 271 119 9 chr1 178239677 178239895 -103953769 - MIR SINE MIR -13 249 8 208 278 0 52 chr1 178241669 178241766 -103951898 + CT-rich Low_complexity Low_complexity 4 95 0 631 222 258 0 chr1 178241926 178242120 -103951544 - MIR SINE MIR -17 245 2 207 214 337 20 chr1 178242209 178242307 -103951357 + MIR SINE MIR 60 188 -74 1336 269 102 43 chr1 178243171 178243839 -103949825 + L2 LINE L2 2348 3065 -248 345 47 0 0 chr1 178243839 178243882 -103949782 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 297 304 0 34 chr1 178244147 178244295 -103949369 + FRAM SINE Alu 24 166 0 240 86 0 0 chr1 178244362 178244397 -103949267 + (TG)n Simple_repeat Simple_repeat 2 36 0 763 226 12 24 chr1 178244403 178244571 -103949093 - AluJo SINE Alu -26 286 121 28 71 0 0 chr1 178244580 178244636 -103949028 + AT_rich Low_complexity Low_complexity 1 56 0 416 231 43 26 chr1 178244640 178244757 -103948907 + L2 LINE L2 3154 3272 0 507 33 0 0 chr1 178245606 178245667 -103947997 + (TG)n Simple_repeat Simple_repeat 2 62 0 268 230 44 37 chr1 178247211 178247346 -103946318 + (CAGAGA)n Simple_repeat Simple_repeat 6 141 0 198 103 0 0 chr1 178248545 178248574 -103945090 + (CCCTG)n Simple_repeat Simple_repeat 3 31 0 22 0 0 0 chr1 178249234 178249256 -103944408 + GC_rich Low_complexity Low_complexity 1 22 0 353 302 0 25 chr1 178251657 178251816 -103941848 + CT-rich Low_complexity Low_complexity 2 156 0 189 74 0 0 chr1 178251853 178251880 -103941784 + (TC)n Simple_repeat Simple_repeat 2 28 0 300 70 0 0 chr1 178252105 178252148 -103941516 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 372 6 0 chr1 178252502 178252724 -103940940 + (TG)n Simple_repeat Simple_repeat 1 223 0 1606 123 67 21 chr1 178253705 178253990 -103939674 - MER1B DNA MER1_type 0 339 42 316 172 0 3 chr1 178254034 178254107 -103939557 - FAM SINE Alu 0 179 115 607 297 15 25 chr1 178254406 178254608 -103939056 - MIR SINE MIR -53 209 10 205 333 129 6 chr1 178254687 178254858 -103938806 + MIR3 SINE MIR 3 194 -14 889 124 8 0 chr1 178255951 178256080 -103937584 - AluJo SINE Alu -171 131 2 2137 65 0 18 chr1 178256105 178256383 -103937281 - AluY SINE Alu 0 311 39 203 278 0 157 chr1 178257643 178257714 -103935950 - MIR3 SINE MIR -3 205 125 654 13 0 0 chr1 178257714 178257789 -103935875 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 2156 74 0 28 chr1 178257791 178258075 -103935589 - AluSg SINE Alu -33 277 2 203 278 0 157 chr1 178258075 178258115 -103935549 - MIR3 SINE MIR -84 124 109 396 311 12 48 chr1 178258230 178258397 -103935267 + MIR3 SINE MIR 43 203 -5 824 153 0 0 chr1 178258966 178259090 -103934574 + FLAM_C SINE Alu 3 126 -7 833 125 21 28 chr1 178259971 178260115 -103933549 + FLAM_C SINE Alu 1 143 0 23 33 0 0 chr1 178260926 178260956 -103932708 + AT_rich Low_complexity Low_complexity 1 30 0 649 226 13 28 chr1 178261098 178261341 -103932323 - L1ME3A LINE L1 -204 5966 5716 2410 57 0 7 chr1 178261374 178261675 -103931989 - AluY SINE Alu -12 299 1 378 0 0 0 chr1 178261717 178261759 -103931905 + (TG)n Simple_repeat Simple_repeat 2 43 0 878 154 21 0 chr1 178261764 178261907 -103931757 - FRAM SINE Alu -30 146 1 360 0 0 0 chr1 178264397 178264437 -103929227 + (TG)n Simple_repeat Simple_repeat 2 41 0 430 291 8 17 chr1 178264591 178264708 -103928956 - MER91A DNA MER1_type -58 138 23 201 289 0 0 chr1 178266323 178266368 -103927296 - L2 LINE L2 -12 3260 3216 29 0 0 0 chr1 178266373 178266402 -103927262 + AT_rich Low_complexity Low_complexity 1 29 0 1010 172 0 18 chr1 178266409 178266578 -103927086 - FRAM SINE Alu 0 166 1 392 250 161 8 chr1 178266788 178266912 -103926752 - MIR SINE MIR -114 148 6 287 255 75 0 chr1 178266999 178267093 -103926571 + MIR SINE MIR 50 150 -112 228 262 172 96 chr1 178267555 178267887 -103925777 + L2 LINE L2 2914 3270 -2 246 307 181 34 chr1 178268008 178268301 -103925363 - L2 LINE L2 -752 2562 2227 2122 77 4 4 chr1 178268989 178269294 -103924370 - AluSc SINE Alu 0 311 7 243 355 112 6 chr1 178270670 178270839 -103922825 - MIR3 SINE MIR -17 191 5 246 184 27 34 chr1 178272475 178272622 -103921042 + (CAGAGA)n Simple_repeat Simple_repeat 1 146 0 204 228 0 0 chr1 178273308 178273365 -103920299 + (CA)n Simple_repeat Simple_repeat 2 58 0 863 261 14 9 chr1 178274746 178274961 -103918703 + MIR SINE MIR 33 248 -14 219 235 0 20 chr1 178274965 178275016 -103918648 + CT-rich Low_complexity Low_complexity 2 51 0 225 0 0 0 chr1 178275980 178276005 -103917659 + (TG)n Simple_repeat Simple_repeat 1 25 0 297 155 0 0 chr1 178276011 178276069 -103917595 + GA-rich Low_complexity Low_complexity 2 59 0 641 134 9 0 chr1 178276638 178276750 -103916914 + CT-rich Low_complexity Low_complexity 1 113 0 306 0 0 0 chr1 178277652 178277686 -103915978 + (CA)n Simple_repeat Simple_repeat 2 35 0 1165 252 104 60 chr1 178278204 178278948 -103914716 + L2 LINE L2 2547 3311 -2 283 355 102 30 chr1 178279365 178279531 -103914133 - L2 LINE L2 -20 3252 3075 298 378 0 0 chr1 178279551 178279649 -103914015 + MIR3 SINE MIR 109 206 -2 1051 240 71 92 chr1 178279936 178280270 -103913394 + L1ME1 LINE L1 5614 5935 -231 2279 96 20 0 chr1 178280270 178280573 -103913091 - AluSg SINE Alu -1 309 1 1051 240 71 92 chr1 178280573 178280746 -103912918 + L1ME1 LINE L1 5935 6110 -56 1679 143 18 61 chr1 178280750 178281079 -103912585 + L1MB4 LINE L1 5866 6180 0 880 85 108 0 chr1 178281217 178281347 -103912317 + AluSg/x SINE Alu 143 286 -26 191 306 16 0 chr1 178281383 178281445 -103912219 + MIR SINE MIR 103 165 -97 1941 139 3 19 chr1 178281741 178281921 -103911743 - AluJb SINE Alu 0 312 138 2139 82 10 13 chr1 178281921 178282226 -103911438 - AluSx SINE Alu -8 304 1 1941 139 3 19 chr1 178282226 178282362 -103911302 - AluJb SINE Alu -174 138 1 269 243 83 0 chr1 178282521 178282628 -103911036 - MIR SINE MIR -54 154 41 733 267 44 5 chr1 178283390 178283596 -103910068 + MIR SINE MIR 20 233 -29 218 196 71 0 chr1 178284697 178284809 -103908855 + (CAGAGA)n Simple_repeat Simple_repeat 2 121 0 1621 187 3 3 chr1 178284968 178285267 -103908397 + AluJo SINE Alu 3 301 -11 527 327 43 0 chr1 178285269 178285431 -103908233 + MIR SINE MIR 23 191 -71 228 371 53 30 chr1 178285538 178285670 -103907994 + MIR SINE MIR 51 185 -77 447 229 55 101 chr1 178286270 178286488 -103907176 - L2 LINE L2 -1 3271 3064 228 371 53 30 chr1 178287238 178287370 -103906294 + MIR SINE MIR 51 185 -77 180 163 0 0 chr1 178287831 178287874 -103905790 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 370 368 8 15 chr1 178287891 178288024 -103905640 - MER91A DNA MER1_type -63 133 2 343 273 16 55 chr1 178288280 178288408 -103905256 - MIR3 SINE MIR -32 176 54 517 274 59 7 chr1 178288821 178288956 -103904708 - MIR SINE MIR -4 258 117 686 260 87 0 chr1 178289617 178289813 -103903851 + MIR SINE MIR 38 250 -12 982 228 30 0 chr1 178292166 178292368 -103901296 + MER63A DNA MER1_type 3 210 0 729 268 30 43 chr1 178292373 178292608 -103901056 - L3 LINE CR1 -38 1539 1308 191 283 187 40 chr1 178292609 178292984 -103900680 - L2 LINE L2 -13 3259 2830 581 128 0 23 chr1 178294274 178294360 -103899304 - FRAM SINE Alu -17 159 76 253 252 38 8 chr1 178294881 178295012 -103898652 + (TCTCTG)n Simple_repeat Simple_repeat 2 136 0 416 306 43 7 chr1 178296158 178296318 -103897346 + MIR SINE MIR 43 203 -59 197 309 24 24 chr1 178298356 178298440 -103895224 + L2 LINE L2 2950 3033 -239 193 333 28 14 chr1 178298671 178298743 -103894921 - MIR3 SINE MIR -49 159 87 433 265 0 29 chr1 178300019 178300121 -103893543 - L2 LINE L2 -9 3304 3206 1994 121 6 43 chr1 178300199 178300775 -103892889 - AluSx SINE Alu 0 564 1 298 228 0 0 chr1 178300775 178300787 -103892877 + CT-rich Low_complexity Low_complexity 2 180 0 28 0 0 0 chr1 178300799 178300827 -103892837 + AT_rich Low_complexity Low_complexity 1 28 0 257 218 64 0 chr1 178301036 178301114 -103892550 - MLT1J LTR MaLR -13 498 416 526 250 15 0 chr1 178301179 178301315 -103892349 - L2 LINE L2 -978 2336 2199 315 344 128 16 chr1 178304418 178304723 -103888941 + L2 LINE L2 2617 2955 -359 383 228 146 41 chr1 178304889 178305012 -103888652 + L2 LINE L2 3159 3294 -19 13549 94 25 97 chr1 178305370 178305960 -103887704 + Tigger1 DNA MER2_type 63 694 -1724 2110 96 10 3 chr1 178305960 178306251 -103887413 + AluSg SINE Alu 1 293 -17 13549 94 25 97 chr1 178306251 178306787 -103886877 + Tigger1 DNA MER2_type 694 1267 -1151 894 140 0 79 chr1 178306787 178306876 -103886788 + FRAM SINE Alu 5 75 -237 2202 112 0 3 chr1 178306876 178307181 -103886483 + AluY SINE Alu 1 304 -7 894 140 0 79 chr1 178307181 178307269 -103886395 + FRAM SINE Alu 75 168 -8 2037 126 0 13 chr1 178307271 178307581 -103886083 + AluSx SINE Alu 3 308 -4 13549 94 25 97 chr1 178307581 178308637 -103885027 + Tigger1 DNA MER2_type 1268 2233 -185 2237 107 0 0 chr1 178308637 178308937 -103884727 + AluSx SINE Alu 1 300 -12 13549 94 25 97 chr1 178308937 178309110 -103884554 + Tigger1 DNA MER2_type 2233 2417 -1 317 299 134 8 chr1 178310443 178310570 -103883094 - L2 LINE L2 0 3313 3171 257 148 111 0 chr1 178310589 178310643 -103883021 - MLT1K LTR MaLR -12 576 517 462 18 0 0 chr1 178310896 178310951 -103882713 + (CA)n Simple_repeat Simple_repeat 2 56 0 527 294 147 52 chr1 178310951 178311529 -103882135 - L2 LINE L2 -626 2688 2056 810 238 27 5 chr1 178311853 178312038 -103881626 + MER5A DNA MER1_type 1 189 0 212 274 16 0 chr1 178312576 178312638 -103881026 + MIR SINE MIR 186 248 -14 193 286 45 119 chr1 178314537 178314873 -103878791 - L2 LINE L2 -86 3186 2876 210 130 78 91 chr1 178314959 178315036 -103878628 + L2 LINE L2 3180 3255 -58 933 235 74 5 chr1 178315348 178315747 -103877917 - MLT1F LTR MaLR -5 537 83 2131 111 0 3 chr1 178315762 178316059 -103877605 - AluSx SINE Alu -16 296 1 408 209 0 23 chr1 178316086 178316172 -103877492 - MLT1F LTR MaLR -507 86 3 370 291 24 16 chr1 178317388 178317515 -103876149 + MIR SINE MIR 2 129 -133 1169 101 6 0 chr1 178317528 178317707 -103875957 + (TTC)n Simple_repeat Simple_repeat 1 180 0 363 136 0 0 chr1 178317707 178317766 -103875898 + (TCC)n Simple_repeat Simple_repeat 3 61 0 1982 143 3 10 chr1 178317773 178318087 -103875577 - AluSx SINE Alu 0 312 1 590 205 86 0 chr1 178318090 178318241 -103875423 + MIR SINE MIR 99 262 0 446 60 83 0 chr1 178319226 178319310 -103874354 + CT-rich Low_complexity Low_complexity 2 92 0 2103 126 7 0 chr1 178319313 178319623 -103874041 - AluSx SINE Alu 0 312 1 251 260 39 13 chr1 178320766 178320843 -103872821 + L2 LINE L2 2904 2982 -290 309 291 118 0 chr1 178320959 178321069 -103872595 + L2 LINE L2 3137 3259 -13 198 0 0 0 chr1 178321069 178321091 -103872573 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 309 271 5 5 chr1 178323743 178323845 -103869819 + L1MC4 LINE L1 1995 6983 -1339 324 270 27 0 chr1 178323751 178323825 -103869839 - L1MC3 LINE L1 -1139 6646 6571 295 73 36 0 chr1 178324167 178324222 -103869442 + (TA)n Simple_repeat Simple_repeat 2 58 0 780 147 0 37 chr1 178325592 178325728 -103867936 + FLAM_A SINE Alu 12 142 0 261 0 0 0 chr1 178325728 178325757 -103867907 + (TA)n Simple_repeat Simple_repeat 2 30 0 251 275 28 28 chr1 178327766 178327875 -103865789 + GA-rich Low_complexity Low_complexity 6 114 0 301 346 0 10 chr1 178328519 178328620 -103865044 - MIR SINE MIR -136 126 27 720 280 111 26 chr1 178329749 178330092 -103863572 - L2 LINE L2 0 3313 2942 2134 115 0 0 chr1 178332295 178332590 -103861074 - AluSx SINE Alu -17 295 1 204 333 122 0 chr1 178332608 178332698 -103860966 - MIR SINE MIR -56 206 106 306 0 0 0 chr1 178333678 178333712 -103859952 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 330 245 116 54 chr1 178333717 178333864 -103859800 - L2 LINE L2 -24 3289 3134 1677 155 10 30 chr1 178339583 178339887 -103853777 + AluJo SINE Alu 1 298 -14 186 43 0 0 chr1 178339893 178339916 -103853748 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 587 246 47 37 chr1 178341027 178341218 -103852446 + MIR3 SINE MIR 6 198 -10 1663 179 21 0 chr1 178342402 178342692 -103850972 + AluJo SINE Alu 13 308 -4 2202 119 0 0 chr1 178343326 178343638 -103850026 + AluSx SINE Alu 1 312 0 1947 141 7 0 chr1 178345332 178345629 -103848035 - AluSx SINE Alu -13 299 1 212 250 0 21 chr1 178347166 178347214 -103846450 + L2 LINE L2 3218 3264 -8 259 218 297 0 chr1 178349288 178349389 -103844275 - MIR3 SINE MIR -48 160 30 181 333 37 25 chr1 178349506 178349587 -103844077 + L2 LINE L2 3182 3263 -50 1004 198 0 16 chr1 178351017 178351209 -103842455 + MER20 DNA MER1_type 1 189 -30 2674 55 0 3 chr1 178351811 178352123 -103841541 + AluY SINE Alu 1 311 0 234 331 41 16 chr1 178353819 178353940 -103839724 - MIR3 SINE MIR 0 208 85 224 300 0 38 chr1 178354562 178354642 -103839022 + MIR3 SINE MIR 2 78 -130 291 157 78 0 chr1 178354887 178354938 -103838726 - MER57A LTR ERV1 -60 343 289 182 208 21 21 chr1 178355156 178355204 -103838460 - L2 LINE L2 -2 3311 3264 736 236 72 30 chr1 178355505 178355742 -103837922 + MER112 DNA MER1_type 2 248 -12 792 239 124 18 chr1 178355831 178356049 -103837615 - MER113 DNA MER1_type? -42 479 239 345 212 92 54 chr1 178356304 178356488 -103837176 - MER113 DNA MER1_type? -268 253 63 230 336 86 0 chr1 178356558 178356686 -103836978 - L3 LINE CR1 -134 1443 1305 679 294 18 9 chr1 178357453 178357681 -103835983 - MIR SINE MIR -21 241 12 185 372 23 31 chr1 178359530 178359659 -103834005 + L3b LINE CR1 1362 1489 -94 424 296 68 11 chr1 178359707 178359883 -103833781 - MIR SINE MIR -43 219 34 415 326 14 7 chr1 178359994 178360135 -103833529 - MIR SINE MIR -115 147 6 254 211 42 0 chr1 178360141 178360212 -103833452 - MER103 DNA DNA -89 77 4 491 287 70 15 chr1 178361546 178361754 -103831910 + MIR SINE MIR 38 260 -2 706 165 23 23 chr1 178362310 178362443 -103831221 - FLAM_C SINE Alu 0 133 1 487 359 88 26 chr1 178362629 178363119 -103830545 + L2 LINE L2 2125 2644 -670 2030 164 7 0 chr1 178363273 178363583 -103830081 - AluJo SINE Alu 0 312 1 4594 173 22 47 chr1 178363707 178365178 -103828486 - L1MB7 LINE L1 0 6184 4755 209 340 28 19 chr1 178365573 178365679 -103827985 + L2 LINE L2 3182 3288 -25 2171 134 0 3 chr1 178366574 178366880 -103826784 - AluJb SINE Alu -7 305 1 2530 63 3 0 chr1 178368528 178368830 -103824834 - AluY SINE Alu -8 303 1 201 286 20 0 chr1 178368940 178368989 -103824675 + L2 LINE L2 3137 3186 -86 1671 155 10 49 chr1 178370205 178370509 -103823155 - AluJo SINE Alu -20 292 1 378 143 0 0 chr1 178370645 178370708 -103822956 - Alu SINE Alu -4 298 236 288 361 17 17 chr1 178371206 178371386 -103822278 - MER5A DNA MER1_type 0 189 10 253 229 16 0 chr1 178371494 178371555 -103822109 + (CA)n Simple_repeat Simple_repeat 2 63 0 2432 77 3 3 chr1 178372180 178372491 -103821173 - AluY SINE Alu 0 311 1 491 269 118 14 chr1 178374116 178374328 -103819336 + MIR SINE MIR 13 246 -16 2407 93 0 0 chr1 178374402 178374693 -103818971 - AluSx SINE Alu -21 291 1 2151 147 6 9 chr1 178374700 178375019 -103818645 - 7SLRNA srpRNA srpRNA -2 318 1 744 257 47 0 chr1 178376165 178376379 -103817285 + L1MC4 LINE L1 5672 5895 -1913 198 293 0 13 chr1 178378616 178378691 -103814973 + L2 LINE L2 2981 3054 -218 2909 258 111 25 chr1 178378722 178379852 -103813812 - L1MC4 LINE L1 -1 8041 6815 332 271 21 10 chr1 178380322 178380418 -103813246 + MIR SINE MIR 57 153 -109 288 271 29 0 chr1 178380769 178380839 -103812825 + L2 LINE L2 3197 3268 -4 652 226 48 32 chr1 178382007 178382193 -103811471 + MER5A DNA MER1_type 1 189 0 1067 312 114 43 chr1 178382256 178383638 -103810026 + L2 LINE L2 1748 3221 -51 1853 55 5 0 chr1 178385028 178385248 -103808416 - AluSp SINE Alu -9 304 84 345 206 0 0 chr1 178385386 178385493 -103808171 + (TA)n Simple_repeat Simple_repeat 2 108 0 513 213 0 0 chr1 178385508 178385682 -103807982 + (TA)n Simple_repeat Simple_repeat 2 175 0 333 284 23 0 chr1 178385688 178385776 -103807888 + L1MC4 LINE L1 6614 6703 -1339 2391 103 0 0 chr1 178385867 178386179 -103807485 - AluSx SINE Alu 0 312 1 225 310 11 23 chr1 178387313 178387400 -103806264 - MIR3 SINE MIR -11 197 112 241 358 180 3 chr1 178388278 178388594 -103805070 + L2 LINE L2 1614 1985 -1329 532 251 66 27 chr1 178389093 178389276 -103804388 + Charlie8 DNA MER1_type 117 306 -2111 353 269 92 7 chr1 178389473 178389614 -103804050 - MIR SINE MIR -10 252 100 203 235 27 20 chr1 178389728 178389877 -103803787 + (CATA)n Simple_repeat Simple_repeat 3 152 0 223 239 145 34 chr1 178390380 178390497 -103803167 - MER5A DNA MER1_type -53 136 7 428 243 62 49 chr1 178390578 178390722 -103802942 + L2 LINE L2 3121 3266 -6 441 339 42 0 chr1 178391151 178391316 -103802348 + MIR SINE MIR 18 189 -73 645 306 134 12 chr1 178391326 178391906 -103801758 + L2 LINE L2 2326 3054 -218 1589 136 85 41 chr1 178391986 178392280 -103801384 - AluJb SINE Alu -5 307 1 191 253 133 0 chr1 178392328 178392411 -103801253 + L2 LINE L2 3219 3312 -1 2338 24 0 0 chr1 178392977 178393232 -103800432 + AluY SINE Alu 49 303 -8 232 205 99 124 chr1 178393237 178393297 -103800367 + MIR SINE MIR 50 110 -152 1848 159 10 32 chr1 178393297 178393606 -103800058 - AluJo SINE Alu -10 302 1 232 205 99 124 chr1 178393606 178393706 -103799958 + MIR SINE MIR 110 206 -56 359 333 27 6 chr1 178393767 178393950 -103799714 - L2 LINE L2 -498 2816 2630 1315 159 105 7 chr1 178394071 178394366 -103799298 + MER33 DNA MER1_type 1 324 0 467 306 62 0 chr1 178394875 178395035 -103798629 + MIR SINE MIR 60 229 -33 276 323 0 0 chr1 178395310 178395375 -103798289 + MIR SINE MIR 35 99 -109 185 279 16 0 chr1 178395524 178395585 -103798079 + MIR SINE MIR 33 94 -114 560 259 46 35 chr1 178395614 178395788 -103797876 - MIR SINE MIR -59 203 28 255 290 47 28 chr1 178396263 178396370 -103797294 + MIR SINE MIR 81 189 -73 1917 147 11 0 chr1 178396414 178396700 -103796964 - AluSx SINE Alu -23 289 1 183 299 80 58 chr1 178399049 178399186 -103794478 + L2 LINE L2 3172 3311 -2 673 226 26 121 chr1 178399251 178399516 -103794148 + MIR SINE MIR 20 259 -3 707 254 27 14 chr1 178399532 178399731 -103793933 - MIR SINE MIR -61 201 3 430 309 170 0 chr1 178399896 178400090 -103793574 - MIR SINE MIR -8 254 28 541 251 111 24 chr1 178400182 178400389 -103793275 + MIR SINE MIR 38 262 0 213 281 0 62 chr1 178400505 178400569 -103793095 - MIR SINE MIR -124 138 79 784 181 0 23 chr1 178402575 178402708 -103790956 - FLAM_C SINE Alu -12 131 2 232 292 0 31 chr1 178402794 178402859 -103790805 + L3 LINE CR1 1510 1572 -5 370 287 84 116 chr1 178404151 178404461 -103789203 + L2 LINE L2 3014 3313 0 228 231 218 13 chr1 178404578 178404656 -103789008 - MIR3 SINE MIR -3 205 112 1703 176 39 24 chr1 178404660 178404836 -103788828 + MLT1A2 LTR MaLR 1 186 -188 273 57 0 0 chr1 178404836 178404871 -103788793 + (CA)n Simple_repeat Simple_repeat 1 35 0 1703 176 39 24 chr1 178404871 178405030 -103788634 + MLT1A2 LTR MaLR 186 341 -33 228 171 49 0 chr1 178405072 178405113 -103788551 - MIR SINE MIR -133 75 33 367 158 105 0 chr1 178406411 178406487 -103787177 + L1MB8 LINE L1 4010 4093 -2053 879 154 0 7 chr1 178406489 178406625 -103787039 + AluJo SINE Alu 1 135 -177 6077 165 47 19 chr1 178406627 178406860 -103786804 + L1MB8 LINE L1 4077 4302 -1876 1620 134 73 29 chr1 178406860 178407135 -103786529 - AluJo SINE Alu -15 297 11 6077 165 47 19 chr1 178407135 178408939 -103784725 + L1MB8 LINE L1 4302 6171 -7 331 252 130 17 chr1 178409150 178409265 -103784399 + MIR SINE MIR 129 256 -6 182 223 97 117 chr1 178409302 178409405 -103784259 - L2 LINE L2 -3 3269 3169 336 24 0 0 chr1 178409697 178409738 -103783926 + (CA)n Simple_repeat Simple_repeat 1 41 0 733 164 0 0 chr1 178410843 178410953 -103782711 - FRAM SINE Alu -10 166 57 681 318 22 35 chr1 178410955 178411270 -103782394 + L2 LINE L2 1685 1995 -1319 911 232 100 0 chr1 178411657 178411877 -103781787 + MIR SINE MIR 11 252 -10 233 232 18 0 chr1 178412270 178412326 -103781338 - L2 LINE L2 0 3272 3216 219 274 63 32 chr1 178412538 178412633 -103781031 + MIR SINE MIR 151 248 -14 2133 117 43 0 chr1 178412658 178412957 -103780707 - AluSx SINE Alu 0 312 1 575 194 103 17 chr1 178413010 178413185 -103780479 + L1MC5 LINE L1 7655 7844 -117 906 164 7 13 chr1 178413230 178413411 -103780253 - AluJb SINE Alu 0 312 138 2393 93 0 3 chr1 178413863 178414173 -103779491 + AluSg SINE Alu 1 309 -1 3590 216 48 31 chr1 178414297 178414799 -103778865 + L1ME2 LINE L1 4162 4654 -1492 2470 74 3 6 chr1 178414799 178415111 -103778553 + AluY SINE Alu 1 311 0 3590 216 48 31 chr1 178415111 178415612 -103778052 + L1ME2 LINE L1 4654 5182 -964 2445 240 69 2 chr1 178415658 178416295 -103777369 + L1ME2 LINE L1 5319 5998 -166 2164 67 11 4 chr1 178416315 178416583 -103777081 + AluY SINE Alu 34 303 -8 809 201 12 0 chr1 178416599 178416763 -103776901 + L1MA10 LINE L1 6169 6334 0 202 277 275 0 chr1 178418078 178418215 -103775449 + MIR SINE MIR 19 192 -70 7554 170 37 10 chr1 178418223 178419921 -103773743 + L1MB7 LINE L1 3726 5554 -630 2300 107 0 0 chr1 178419921 178420219 -103773445 + AluSx SINE Alu 1 298 -14 7554 170 37 10 chr1 178420219 178420860 -103772804 + L1MB7 LINE L1 5554 6176 -8 445 221 110 8 chr1 178421267 178421394 -103772270 + L2 LINE L2 2593 2732 -582 196 257 114 0 chr1 178423105 178423175 -103770489 + MIR SINE MIR 80 157 -105 1808 134 20 27 chr1 178423535 178423833 -103769831 + AluJo SINE Alu 1 296 -16 702 250 167 33 chr1 178424067 178424597 -103769067 + MLT1G1 LTR MaLR 1 516 -33 547 264 44 13 chr1 178424723 178424882 -103768782 - MIR SINE MIR 0 262 99 385 229 36 12 chr1 178425011 178425094 -103768570 - MIR3 SINE MIR -35 173 89 5005 128 46 38 chr1 178425105 178425322 -103768342 + L1MB7 LINE L1 5287 5501 -683 1896 160 3 7 chr1 178425322 178425629 -103768035 + AluJb SINE Alu 1 306 -6 5005 128 46 38 chr1 178425629 178425695 -103767969 + L1MB7 LINE L1 5501 5565 -619 2125 117 0 7 chr1 178425695 178426009 -103767655 - AluSx SINE Alu 0 312 1 5005 128 46 38 chr1 178426009 178426614 -103767050 + L1MB7 LINE L1 5565 6184 0 361 271 21 10 chr1 178427133 178427229 -103766435 + MIR SINE MIR 57 153 -109 311 271 29 0 chr1 178427580 178427650 -103766014 + L2 LINE L2 3197 3268 -4 726 226 48 32 chr1 178428818 178429004 -103764660 + MER5A DNA MER1_type 1 189 0 1362 306 114 43 chr1 178429067 178430449 -103763215 + L2 LINE L2 1748 3221 -51 1820 59 5 0 chr1 178431839 178432059 -103761605 - AluSp SINE Alu -9 304 84 258 194 0 0 chr1 178432197 178432269 -103761395 + (TA)n Simple_repeat Simple_repeat 2 73 0 316 234 0 43 chr1 178432274 178432368 -103761296 + L1MC4 LINE L1 6614 6703 -1339 513 213 0 0 chr1 178432388 178432562 -103761102 + (TA)n Simple_repeat Simple_repeat 2 175 0 324 267 47 0 chr1 178432568 178432654 -103761010 + L1MC4 LINE L1 6614 6703 -1339 2358 106 0 0 chr1 178432747 178433059 -103760605 - AluSx SINE Alu 0 312 1 1981 126 0 7 chr1 178433281 178433591 -103760073 + AluSq SINE Alu 1 308 0 244 353 92 22 chr1 178433605 178433789 -103759875 + L2 LINE L2 2508 2704 -610 2371 84 10 7 chr1 178434186 178434496 -103759168 + AluSx SINE Alu 1 311 -1 1795 158 34 3 chr1 178435184 178435475 -103758189 + AluJb SINE Alu 1 300 -12 496 299 22 38 chr1 178435707 178435891 -103757773 - MIR3 SINE MIR -15 193 13 309 237 158 36 chr1 178437345 178437484 -103756180 - MIR3 SINE MIR -15 193 38 341 319 50 25 chr1 178438116 178438235 -103755429 - L2 LINE L2 -3 3269 3148 477 236 14 88 chr1 178438858 178439079 -103754585 + MIR SINE MIR 20 216 -46 270 176 0 0 chr1 178440989 178441040 -103752624 + A-rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr1 178441516 178441539 -103752125 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 178442033 178442079 -103751585 + GC_rich Low_complexity Low_complexity 1 46 0 308 281 146 89 chr1 178442138 178442804 -103750860 + L1M2 LINE L1 547 1250 -5599 1766 66 29 12 chr1 178443213 178443454 -103750210 + AluSx SINE Alu 44 288 -24 45 0 0 0 chr1 178443455 178443500 -103750164 + AT_rich Low_complexity Low_complexity 1 45 0 2209 91 3 3 chr1 178444029 178444315 -103749349 + AluSx SINE Alu 1 286 -26 2273 208 110 51 chr1 178444478 178445205 -103748459 - Charlie7 DNA MER1_type -383 2229 1460 332 232 126 11 chr1 178445274 178445369 -103748295 - Charlie7 DNA MER1_type -2396 216 111 2291 49 0 0 chr1 178445392 178445657 -103748007 - AluY SINE Alu -2 309 45 1515 101 101 0 chr1 178446023 178446232 -103747432 - MER30 DNA MER1_type 0 230 1 236 311 17 59 chr1 178446320 178446439 -103747225 - MIR SINE MIR -98 164 51 819 181 134 32 chr1 178447016 178447232 -103746432 - MIR SINE MIR 0 262 25 1508 186 0 7 chr1 178447958 178448227 -103745437 + AluJo SINE Alu 39 305 -7 881 228 92 78 chr1 178448262 178448609 -103745055 - L1ME1 LINE L1 -19 6216 5865 * 4999 194 52 157 chr1 178448579 178449514 -103744150 - L1ME1 LINE L1 -1738 4477 3446 2209 109 0 0 chr1 178449514 178449824 -103743840 - AluSq SINE Alu 0 310 1 4999 194 52 157 chr1 178449824 178450578 -103743086 - L1ME1 LINE L1 -2769 3446 2615 859 169 0 29 chr1 178450578 178450714 -103742950 + FLAM_C SINE Alu 1 132 -1 4999 194 52 157 chr1 178450714 178451339 -103742325 - L1ME1 LINE L1 -3600 2615 1926 2080 102 3 0 chr1 178451339 178451657 -103742007 - AluSx SINE Alu 0 319 1 2041 121 0 3 chr1 178451662 178451952 -103741712 - AluSx SINE Alu -23 289 1 4999 194 52 157 chr1 178451952 178452097 -103741567 - L1ME1 LINE L1 -4293 1922 2372 2008 133 126 31 chr1 178452097 178452487 -103741177 + MSTA LTR MaLR 2 428 0 4999 194 52 157 chr1 178452487 178452704 -103740960 - L1ME1 LINE L1 -3842 2373 2135 212 103 69 0 chr1 178452715 178452773 -103740891 + (TA)n Simple_repeat Simple_repeat 2 63 0 4278 167 73 42 chr1 178452774 178453330 -103740334 - L1MB4 LINE L1 -18 6231 5694 1833 150 14 3 chr1 178453330 178453624 -103740040 - AluJo SINE Alu -13 299 3 4278 167 73 42 chr1 178453624 178454918 -103738746 - L1MB4 LINE L1 -555 5694 4344 2221 98 3 7 chr1 178454977 178455282 -103738382 + AluSx SINE Alu 1 304 -8 4718 219 44 20 chr1 178457242 178458013 -103735651 - L1MB4 LINE L1 -1860 4355 3604 1769 191 41 22 chr1 178458013 178458380 -103735284 - MLT1A2 LTR MaLR 0 374 1 4718 219 44 20 chr1 178458380 178459279 -103734385 - L1MB4 LINE L1 -2611 3604 2728 1646 185 13 3 chr1 178459279 178459581 -103734083 - AluJb SINE Alu -7 305 1 1224 126 10 34 chr1 178459588 178459826 -103733838 - AluSg/x SINE Alu 0 315 83 1817 258 65 23 chr1 178459827 178460623 -103733041 - L1ME1 LINE L1 -4757 1639 810 809 211 6 0 chr1 178460621 178460801 -103732863 - L1M4 LINE L1 -2129 4017 3837 * 10276 55 5 1 chr1 178460801 178462868 -103730796 - L1PA6 LINE L1 -6 6148 4078 3186 241 7 43 chr1 178462870 178463200 -103730464 - L1ME1 LINE L1 -5571 825 485 2087 145 0 0 chr1 178463200 178463511 -103730153 - AluSx SINE Alu -1 311 1 3186 241 7 43 chr1 178463511 178463998 -103729666 - L1ME1 LINE L1 -5911 485 37 777 241 25 55 chr1 178464136 178464372 -103729292 + MIR SINE MIR 31 259 -3 1034 143 11 11 chr1 178464561 178464736 -103728928 + AluJo SINE Alu 1 175 -137 286 164 82 0 chr1 178464739 178464800 -103728864 + AluSc SINE Alu 226 291 -8 233 325 100 40 chr1 178464811 178465060 -103728604 + L1ME LINE L1 5370 5633 -488 322 289 114 26 chr1 178465061 178465175 -103728489 + L1ME LINE L1 5690 5813 -308 1205 96 0 0 chr1 178465259 178465426 -103728238 + AluYa5 SINE Alu 136 302 -9 24 0 0 51 chr1 178465575 178465593 -103728071 + AT_rich Low_complexity Low_complexity 1 18 -19 2249 100 0 0 chr1 178465593 178465902 -103727762 - AluSg SINE Alu -1 309 1 24 0 0 51 chr1 178465902 178465922 -103727742 + AT_rich Low_complexity Low_complexity 18 37 0 257 310 11 23 chr1 178467036 178467123 -103726541 - MIR3 SINE MIR -11 197 112 228 340 138 40 chr1 178467127 178467583 -103726081 + L2 LINE L2 494 994 -2320 351 354 180 3 chr1 178468001 178468317 -103725347 + L2 LINE L2 1614 1985 -1329 2230 134 59 0 chr1 178468701 178469059 -103724605 - L1PB3 LINE L1 0 6154 5776 331 348 61 49 chr1 178469183 178469430 -103724234 + L1MEd LINE L1 232 481 -5724 581 176 33 52 chr1 178469463 178469616 -103724048 + L1MC5 LINE L1 6957 7106 -855 180 0 0 0 chr1 178471384 178471404 -103722260 + (A)n Simple_repeat Simple_repeat 1 20 0 323 236 141 19 chr1 178471404 178471670 -103721994 + L1MC5 LINE L1 7099 7482 -479 180 176 0 0 chr1 178471686 178471720 -103721944 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 481 197 63 79 chr1 178471766 178472020 -103721644 + L1MC5 LINE L1 7482 7731 -230 2223 93 0 0 chr1 178472070 178472370 -103721294 - AluSg SINE Alu -7 303 4 488 316 22 26 chr1 178472382 178472610 -103721054 - MLT1J1 LTR MaLR 0 446 220 903 108 0 8 chr1 178472690 178472820 -103720844 + FLAM_C SINE Alu 3 131 -2 345 321 64 64 chr1 178472849 178473067 -103720597 + L1MEd LINE L1 1977 2194 -4202 714 229 173 21 chr1 178473315 178473599 -103720065 + MER102a DNA MER1_type 1 327 -3 401 333 12 12 chr1 178473726 178473888 -103719776 - MIR SINE MIR -54 208 47 200 345 35 18 chr1 178473883 178473996 -103719668 + L2 LINE L2 2744 2858 -456 * 203 318 91 0 chr1 178474002 178474112 -103719552 + L2 LINE L2 2971 3090 -223 541 211 57 74 chr1 178474125 178474300 -103719364 - MER63A DNA MER1_type -1 209 38 430 241 46 0 chr1 178474368 178474476 -103719188 + MIR SINE MIR 149 261 -1 656 220 173 19 chr1 178474522 178474678 -103718986 - MER63A DNA MER1_type 0 210 36 255 292 0 0 chr1 178474698 178474763 -103718901 + L2 LINE L2 3249 3313 0 2101 96 14 0 chr1 178474773 178475091 -103718573 + AluSx SINE Alu 1 322 0 2069 118 7 0 chr1 178475941 178476237 -103717427 - AluSx SINE Alu -14 298 1 834 257 109 43 chr1 178476309 178476466 -103717198 - L1MC4a LINE L1 -1642 6166 6021 1946 123 0 27 chr1 178476466 178476797 -103716867 - AluSx SINE Alu 0 323 1 834 257 109 43 chr1 178476797 178477124 -103716540 - L1MC4a LINE L1 -1787 6021 5649 214 364 0 0 chr1 178477124 178477190 -103716474 - MIR SINE MIR -113 149 84 381 305 112 53 chr1 178477268 178477480 -103716184 - L2 LINE L2 -9 3263 3024 2262 52 3 36 chr1 178477480 178477786 -103715878 + AluY SINE Alu 1 296 -15 381 305 112 53 chr1 178477786 178477894 -103715770 - L2 LINE L2 -248 3024 2924 1047 337 80 38 chr1 178478764 178479428 -103714236 - L2 LINE L2 -723 2591 1900 1924 134 0 6 chr1 178479684 178479998 -103713666 - AluSx SINE Alu 0 312 1 2568 43 0 0 chr1 178480814 178481119 -103712545 - AluY SINE Alu -6 305 1 911 219 46 76 chr1 178481377 178481506 -103712158 + MIR SINE MIR 22 142 -120 806 161 0 29 chr1 178481506 178481643 -103712021 + FLAM_C SINE Alu 1 133 0 911 219 46 76 chr1 178481643 178481750 -103711914 + MIR SINE MIR 142 251 -11 567 108 0 0 chr1 178481753 178481827 -103711837 - AluJb SINE Alu -19 293 220 907 174 50 0 chr1 178481830 178481868 -103711796 - AluJb SINE Alu -143 169 134 261 0 0 0 chr1 178481868 178481897 -103711767 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 907 174 50 0 chr1 178481897 178482019 -103711645 - AluJb SINE Alu -178 134 1 830 149 8 0 chr1 178482100 178482234 -103711430 - FRAM SINE Alu -14 162 28 434 274 80 37 chr1 178482234 178482559 -103711105 + L1ME4a LINE L1 5603 5941 -180 2041 101 16 29 chr1 178482639 178482945 -103710719 + AluSx SINE Alu 1 302 -10 329 210 0 48 chr1 178483115 178483177 -103710487 + L2 LINE L2 3205 3263 -9 6128 112 39 119 chr1 178483196 178483706 -103709958 + Tigger3b DNA MER2_type 41 590 -2438 1559 167 11 18 chr1 178483706 178483987 -103709677 - AluJb SINE Alu -25 287 9 6128 112 39 119 chr1 178483987 178484007 -103709657 + Tigger3b DNA MER2_type 590 610 -2418 2222 76 3 7 chr1 178484007 178484308 -103709356 - AluY SINE Alu -11 300 1 6128 112 39 119 chr1 178484308 178484556 -103709108 + Tigger3b DNA MER2_type 610 876 -2152 1737 117 23 4 chr1 178484556 178484821 -103708843 + AluSx SINE Alu 38 307 -5 6128 112 39 119 chr1 178484821 178485335 -103708329 + Tigger3b DNA MER2_type 876 1231 0 21 0 0 0 chr1 178485335 178485356 -103708308 + AT_rich Low_complexity Low_complexity 1 21 0 847 71 27 0 chr1 178485435 178485547 -103708117 + Tigger3(Golem) DNA MER2_type 2153 2267 -762 1562 168 70 0 chr1 178485721 178486007 -103707657 + AluSx SINE Alu 1 306 -6 329 344 138 12 chr1 178486094 178486254 -103707410 + MIR3 SINE MIR 10 189 -19 1132 179 5 27 chr1 178486855 178487078 -103706586 + MER20 DNA MER1_type 2 219 0 197 200 27 107 chr1 178487540 178487615 -103706049 + MIR3 SINE MIR 110 178 -30 230 225 67 45 chr1 178489014 178489103 -103704561 - REP3 LTR ERV -365 197 107 900 156 111 10 chr1 178489690 178489889 -103703775 - AluJo SINE Alu -7 305 87 2195 115 0 3 chr1 178489917 178490230 -103703434 - AluSx SINE Alu 0 312 1 340 319 64 85 chr1 178490234 178490516 -103703148 + L2 LINE L2 2995 3270 -2 243 261 15 0 chr1 178490604 178490669 -103702995 + MIR SINE MIR 76 141 -121 2385 86 0 0 chr1 178491068 178491372 -103702292 + AluSq SINE Alu 1 304 -9 261 83 0 0 chr1 178491966 178492002 -103701662 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 610 291 81 83 chr1 178492428 178492871 -103700793 + L2 LINE L2 2831 3272 0 180 111 0 0 chr1 178492871 178492898 -103700766 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 234 277 130 34 chr1 178492898 178493075 -103700589 + L2 LINE L2 2520 2713 -601 2235 93 7 0 chr1 178493076 178493386 -103700278 + AluSp SINE Alu 1 312 -1 2206 111 7 0 chr1 178493628 178493935 -103699729 + AluSx SINE Alu 1 309 -3 234 260 0 0 chr1 178494144 178494194 -103699470 + L2 LINE L2 3264 3313 0 2070 112 3 0 chr1 178494539 178494833 -103698831 - AluSx SINE Alu -17 295 1 220 128 13 64 chr1 178496019 178496097 -103697567 + GA-rich Low_complexity Low_complexity 4 77 0 2302 85 0 25 chr1 178496486 178496802 -103696862 - AluSg SINE Alu -2 308 1 195 69 0 0 chr1 178496852 178496881 -103696783 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1994 113 0 3 chr1 178496881 178497160 -103696504 - AluSx SINE Alu -32 280 3 260 216 0 0 chr1 178497200 178497251 -103696413 + L2 LINE L2 3263 3313 0 353 268 20 72 chr1 178497279 178497432 -103696232 + L2 LINE L2 3168 3312 -1 272 292 212 22 chr1 178497851 178497988 -103695676 - MIR3 SINE MIR -27 181 19 510 185 125 152 chr1 178498036 178498139 -103695525 - MER5A DNA MER1_type -2 187 83 1888 133 25 0 chr1 178498139 178498443 -103695221 - AluSx SINE Alu 0 311 1 510 185 125 152 chr1 178498443 178498455 -103695209 - MER5A DNA MER1_type -106 83 72 2530 55 0 0 chr1 178498455 178498763 -103694901 - AluY SINE Alu -3 308 1 510 185 125 152 chr1 178498763 178498829 -103694835 - MER5A DNA MER1_type -117 72 9 245 242 32 16 chr1 178499593 178499655 -103694009 - MIR SINE MIR -141 121 59 517 301 97 22 chr1 178500584 178500810 -103692854 - MIR SINE MIR -5 257 15 21 0 0 0 chr1 178501030 178501051 -103692613 + AT_rich Low_complexity Low_complexity 1 21 0 216 175 0 63 chr1 178502698 178502761 -103690903 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 236 193 0 35 chr1 178503203 178503260 -103690404 + (CCCCAA)n Simple_repeat Simple_repeat 1 55 0 503 176 0 12 chr1 178506261 178506346 -103687318 - FRAM/FAM SINE Alu -92 84 1 190 294 44 0 chr1 178506702 178506770 -103686894 + L2 LINE L2 3201 3271 -1 1949 156 3 0 chr1 178506854 178507142 -103686522 - AluSx SINE Alu -13 299 11 204 309 6 23 chr1 178508798 178508973 -103684691 + (TG)n Simple_repeat Simple_repeat 2 173 0 457 229 37 0 chr1 178509262 178509371 -103684293 + MER81 DNA DNA 1 113 -1 377 286 16 24 chr1 178510014 178510140 -103683524 + L2 LINE L2 3143 3267 -5 483 243 28 0 chr1 178510654 178510798 -103682866 - MER115 DNA AcHobo -428 265 118 303 261 134 0 chr1 178512791 178512910 -103680754 + L2 LINE L2 3137 3271 -1 252 164 119 30 chr1 178512992 178513059 -103680605 + L2 LINE L2 3200 3272 0 796 229 33 29 chr1 178513224 178513441 -103680223 + MIR SINE MIR 3 218 -44 216 282 291 18 chr1 178514525 178514635 -103679029 + MIR3 SINE MIR 20 159 -49 412 259 241 30 chr1 178514717 178514883 -103678781 - MIR SINE MIR -41 221 21 514 301 117 27 chr1 178515538 178515837 -103677827 - L2 LINE L2 -2 3270 2945 468 252 9 0 chr1 178515916 178516027 -103677637 + MIR SINE MIR 92 203 -59 195 343 36 29 chr1 178516060 178516200 -103677464 - L2 LINE L2 -399 2915 2775 1290 186 66 7 chr1 178517070 178517344 -103676320 - L1MB7 LINE L1 -12 6172 5883 215 105 70 18 chr1 178517727 178517784 -103675880 + (TA)n Simple_repeat Simple_repeat 2 61 0 237 132 0 0 chr1 178520676 178520714 -103672950 + (A)n Simple_repeat Simple_repeat 1 38 0 242 296 143 31 chr1 178522596 178522792 -103670872 + L2 LINE L2 3096 3313 0 2237 125 0 3 chr1 178523980 178524284 -103669380 - AluSx SINE Alu -9 303 1 2286 101 10 0 chr1 178526280 178526578 -103667086 - AluSg SINE Alu -9 301 1 752 216 114 0 chr1 178527033 178527200 -103666464 + MIR SINE MIR 45 230 -32 21 0 0 0 chr1 178527218 178527239 -103666425 + AT_rich Low_complexity Low_complexity 1 21 0 1105 246 47 6 chr1 178527266 178527587 -103666077 + L1MC4 LINE L1 7709 8042 0 209 284 98 39 chr1 178527853 178527955 -103665709 + L2 LINE L2 3123 3230 -83 274 320 48 34 chr1 178528092 178528239 -103665425 + MIR SINE MIR 104 252 -10 1797 139 62 3 chr1 178528397 178528685 -103664979 - AluSx SINE Alu -7 305 1 1430 158 79 46 chr1 178529492 178529820 -103663844 + MER44D DNA MER2_type 1 609 0 21 0 0 0 chr1 178533094 178533115 -103660549 + AT_rich Low_complexity Low_complexity 1 21 0 348 43 0 0 chr1 178533947 178533993 -103659671 + (CA)n Simple_repeat Simple_repeat 2 47 0 590 240 66 41 chr1 178536354 178536550 -103657114 + MIR SINE MIR 54 254 -8 378 306 85 7 chr1 178538000 178538205 -103655459 + MIR SINE MIR 32 257 -5 229 250 0 0 chr1 178538426 178538474 -103655190 + MIR SINE MIR 105 152 -110 209 200 20 20 chr1 178538554 178538604 -103655060 + MIR SINE MIR 100 149 -113 245 343 0 0 chr1 178539568 178539635 -103654029 - L3 LINE CR1 -1 1576 1510 866 272 226 41 chr1 178539850 178540416 -103653248 - L3 LINE CR1 -159 1418 748 1618 182 0 69 chr1 178541921 178542240 -103651424 - AluJo SINE Alu -15 297 1 273 306 0 0 chr1 178542439 178542511 -103651153 - L2 LINE L2 0 3313 3242 472 333 92 0 chr1 178542735 178542888 -103650776 - L2 LINE L2 -3 3269 3103 2460 156 3 8 chr1 178543105 178543497 -103650167 + MLT1B LTR MaLR 1 390 0 454 238 49 8 chr1 178543601 178543723 -103649941 + MLT1L LTR MaLR 489 615 0 363 328 17 9 chr1 178544496 178544612 -103649052 + MIR3 SINE MIR 15 131 -77 431 294 130 0 chr1 178545486 178545632 -103648032 + MIR SINE MIR 86 250 -12 2189 229 58 22 chr1 178546042 178546578 -103647086 + MLT1H1 LTR MaLR 1 555 0 326 273 112 107 chr1 178547972 178548214 -103645450 - MIR SINE MIR -1 261 19 757 225 113 0 chr1 178548251 178548411 -103645253 - MER45A DNA AcHobo 0 178 1 675 251 139 0 chr1 178549250 178549465 -103644199 + MIR SINE MIR 15 259 -3 874 272 29 8 chr1 178549495 178549738 -103643926 + MIR SINE MIR 14 261 -1 367 213 27 0 chr1 178549785 178549860 -103643804 - MIR SINE MIR -110 152 76 249 257 83 37 chr1 178550015 178550124 -103643540 + L2 LINE L2 3158 3271 -1 258 241 75 83 chr1 178550175 178550308 -103643356 - L2 LINE L2 -817 2497 2366 230 268 45 36 chr1 178552853 178552965 -103640699 + MIR3 SINE MIR 90 202 -6 991 264 50 77 chr1 178552991 178553331 -103640333 + L2 LINE L2 2824 3147 -166 823 125 0 0 chr1 178553331 178553451 -103640213 - FLAM_C SINE Alu -9 124 5 991 264 50 77 chr1 178553451 178553614 -103640050 + L2 LINE L2 3147 3313 0 302 289 41 33 chr1 178554714 178554835 -103638829 + L1M LINE L1 5304 5425 -696 234 316 65 24 chr1 178554973 178555141 -103638523 - L1ME3A LINE L1 -7 6163 5989 313 289 10 21 chr1 178555209 178555306 -103638358 - L1ME3A LINE L1 -204 5960 5865 207 292 0 0 chr1 178555405 178555453 -103638211 + L2 LINE L2 3210 3257 -15 24 0 0 0 chr1 178555866 178555890 -103637774 + AT_rich Low_complexity Low_complexity 1 24 0 2627 49 7 0 chr1 178556457 178556763 -103636901 + AluY SINE Alu 1 308 -3 243 273 36 9 chr1 178556906 178557016 -103636648 - L1ME3A LINE L1 -2383 5425 5313 4951 143 50 6 chr1 178558167 178559032 -103634632 - MER4D LTR ERV1 0 903 1 2223 122 3 0 chr1 178559390 178559693 -103633971 - AluSx SINE Alu -8 304 1 181 222 22 0 chr1 178560152 178560197 -103633467 + MIR SINE MIR 214 259 -3 358 209 18 64 chr1 178561077 178561187 -103632477 + MIR SINE MIR 26 130 -132 1995 154 3 3 chr1 178561392 178561690 -103631974 + AluJb SINE Alu 3 300 -12 2156 121 140 19 chr1 178561828 178562250 -103631414 + L1MC3 LINE L1 7289 7761 -24 29 28 0 0 chr1 178562258 178562294 -103631370 + AT_rich Low_complexity Low_complexity 1 36 0 331 263 110 8 chr1 178564249 178564367 -103629297 + L1M LINE L1 5259 5388 -2420 857 193 23 0 chr1 178564383 178564554 -103629110 + MLT1A1 LTR MaLR 1 175 -190 181 255 0 0 chr1 178564645 178564692 -103628972 + L2 LINE L2 3223 3269 -3 2922 149 161 108 chr1 178564937 178565491 -103628173 - L1MC3 LINE L1 -6 7779 7256 240 307 23 0 chr1 178565491 178565579 -103628085 - MLT1F1 LTR MaLR -443 124 35 2922 149 161 108 chr1 178565579 178565960 -103627704 - L1MC3 LINE L1 -529 7256 6702 401 271 60 23 chr1 178566321 178566454 -103627210 + MIR SINE MIR 20 157 -105 351 171 61 12 chr1 178566558 178566640 -103627024 + MIR SINE MIR 166 251 -11 838 111 7 56 chr1 178567160 178567304 -103626360 - FLAM_C SINE Alu -6 137 1 351 321 74 12 chr1 178567488 178567650 -103626014 - MIR SINE MIR -70 192 21 481 263 23 0 chr1 178568305 178568434 -103625230 - MIR SINE MIR -62 146 36 277 231 108 0 chr1 178568687 178568752 -103624912 - MIR SINE MIR -73 189 118 732 238 45 5 chr1 178569222 178569424 -103624240 - MER63A DNA MER1_type 0 210 1 447 273 29 35 chr1 178571165 178571337 -103622327 + MIR3 SINE MIR 20 190 -18 1992 143 0 0 chr1 178571904 178572176 -103621488 + AluSx SINE Alu 1 272 -40 305 272 81 41 chr1 178573125 178573300 -103620364 + MIR SINE MIR 2 182 -65 1661 163 74 3 chr1 178573841 178574124 -103619540 + AluJb SINE Alu 1 303 -9 291 54 0 0 chr1 178575321 178575358 -103618306 + (T)n Simple_repeat Simple_repeat 1 37 0 2306 95 44 0 chr1 178575485 178575780 -103617884 - AluSc SINE Alu -1 308 1 264 271 32 38 chr1 178575923 178576073 -103617591 + L1M4 LINE L1 5695 5845 -309 200 139 0 23 chr1 178576770 178576813 -103616851 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 189 0 0 0 chr1 178577508 178577529 -103616135 + (TA)n Simple_repeat Simple_repeat 2 22 0 1225 137 0 0 chr1 178577529 178577697 -103615967 - AluJb SINE Alu -11 301 134 241 297 126 29 chr1 178578191 178578366 -103615298 + MIR3 SINE MIR 17 208 0 2115 114 3 21 chr1 178578907 178579217 -103614447 - AluSx SINE Alu 0 305 1 1019 252 8 4 chr1 178580125 178580371 -103613293 - MLT1D LTR MaLR 0 505 259 495 166 26 99 chr1 178580396 178580547 -103613117 - MLT1D LTR MaLR -486 140 1 1721 180 3 29 chr1 178580855 178581171 -103612493 - AluJb SINE Alu -2 310 3 207 330 10 31 chr1 178582405 178582502 -103611162 + L2 LINE L2 2862 2956 -316 335 220 220 0 chr1 178582560 178582660 -103611004 + MER45A DNA AcHobo 57 178 0 251 313 62 0 chr1 178582757 178582853 -103610811 + L2 LINE L2 3171 3272 0 296 274 57 9 chr1 178583136 178583242 -103610422 + L2 LINE L2 2943 3053 -219 288 211 0 0 chr1 178583658 178583729 -103609935 + GA-rich Low_complexity Low_complexity 3 73 0 528 262 163 23 chr1 178584892 178585236 -103608428 - HAL1 LINE L1 0 2507 2116 728 279 45 5 chr1 178585242 178585464 -103608200 - MIR SINE MIR -26 236 6 768 301 139 5 chr1 178585482 178585891 -103607773 - L2 LINE L2 -22 3291 2828 1092 264 226 22 chr1 178585986 178586055 -103607609 - L2 LINE L2 -469 2845 2791 2171 111 0 10 chr1 178586055 178586353 -103607311 - AluSg SINE Alu -15 295 1 1092 264 226 22 chr1 178586353 178587057 -103606607 - L2 LINE L2 -523 2791 1914 282 328 170 8 chr1 178587118 178587359 -103606305 + L2 LINE L2 3031 3310 -3 3199 186 93 94 chr1 178587607 178588152 -103605512 - L1MC3 LINE L1 -6 7779 7144 251 253 44 44 chr1 178588152 178588243 -103605421 - MLT1H LTR MaLR -376 173 83 3199 186 93 94 chr1 178588243 178588674 -103604990 - L1MC3 LINE L1 -641 7144 6714 808 258 40 9 chr1 178589047 178589272 -103604392 + MIR SINE MIR 20 251 -11 218 351 18 27 chr1 178590602 178590713 -103602951 - MIR3 SINE MIR -87 121 12 289 234 25 38 chr1 178591020 178591178 -103602486 + (TATAA)n Simple_repeat Simple_repeat 3 158 0 2861 226 106 22 chr1 178592331 178593221 -103600443 + MER52A LTR ERV1 52 1195 -560 272 180 0 16 chr1 178593216 178593277 -103600387 + MER52A LTR ERV1 1686 1745 -10 * 481 259 24 6 chr1 178593388 178593536 -103600128 - MIR SINE MIR -63 145 19 277 231 108 0 chr1 178593796 178593861 -103599803 - MIR SINE MIR -73 189 118 760 231 51 10 chr1 178594265 178594460 -103599204 - MER63A DNA MER1_type -7 203 1 1713 185 20 35 chr1 178594982 178595377 -103598287 + MLT1B LTR MaLR 2 390 0 503 262 18 30 chr1 178596400 178596564 -103597100 + MIR3 SINE MIR 20 181 -27 371 314 160 0 chr1 178597961 178598117 -103595547 + MER5A DNA MER1_type 9 189 0 258 32 0 0 chr1 178598180 178598211 -103595453 + (CA)n Simple_repeat Simple_repeat 2 32 0 291 291 32 38 chr1 178598277 178598435 -103595229 - HAL1 LINE L1 -106 2401 2245 1343 124 5 9 chr1 178598639 178598856 -103594808 - L1M2 LINE L1 -560 5740 5525 654 161 0 0 chr1 178598856 178598968 -103594696 + L1MA3 LINE L1 6188 6305 0 365 203 25 85 chr1 178599321 178599439 -103594225 - MER5B DNA MER1_type 0 178 68 292 200 146 45 chr1 178600364 178600474 -103593190 + L2 LINE L2 3186 3306 -7 211 211 0 0 chr1 178602218 178602270 -103591394 + (TA)n Simple_repeat Simple_repeat 2 53 0 4498 33 0 12 chr1 178602565 178603080 -103590584 + L1PA4 LINE L1 5647 6155 0 308 287 53 20 chr1 178603691 178603841 -103589823 + MLT1L LTR MaLR 372 526 -89 305 293 67 18 chr1 178603879 178604043 -103589621 + L1M4 LINE L1 3157 3328 -2818 1096 183 73 0 chr1 178604065 178604184 -103589480 + AluJo SINE Alu 1 141 -171 280 0 0 48 chr1 178604184 178604226 -103589438 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1096 183 73 0 chr1 178604226 178604297 -103589367 + AluJo SINE Alu 141 205 -107 1253 126 34 75 chr1 178604470 178604625 -103589039 + MSTC LTR MaLR 1 144 -284 2083 164 31 65 chr1 178604625 178605039 -103588625 + MER57A LTR ERV1 1 400 -3 1253 126 34 75 chr1 178605039 178605122 -103588542 + MSTC LTR MaLR 144 229 -199 999 176 0 31 chr1 178605256 178605449 -103588215 + MSTC LTR MaLR 225 411 -17 726 279 34 21 chr1 178605763 178606000 -103587664 - MIR SINE MIR -18 244 5 22 0 0 0 chr1 178606112 178606134 -103587530 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 178607272 178607295 -103586369 + AT_rich Low_complexity Low_complexity 1 23 0 412 328 122 17 chr1 178607342 178607702 -103585962 + L1M4 LINE L1 3579 3976 -2170 1174 136 22 22 chr1 178607707 178607891 -103585773 - L1PA10 LINE L1 -7 6161 5978 23691 175 15 27 chr1 178607904 178613179 -103580485 - L1P3 LINE L1 -1214 5247 11 485 365 16 0 chr1 178613194 178613449 -103580215 + L1M4 LINE L1 3983 4241 -1905 635 282 65 85 chr1 178614532 178614919 -103578745 + L2 LINE L2 2930 3308 -5 325 280 0 24 chr1 178614989 178615115 -103578549 - MIR SINE MIR -62 146 39 189 306 113 38 chr1 178615469 178615629 -103578035 + MIR3 SINE MIR 3 174 -34 873 203 62 0 chr1 178615789 178615966 -103577698 + MER5A DNA MER1_type 2 189 0 493 205 160 0 chr1 178617581 178617713 -103575951 - MER5A DNA MER1_type -29 160 4 506 239 75 19 chr1 178617740 178617899 -103575765 + MER5B DNA MER1_type 4 171 -7 9232 157 37 12 chr1 178617949 178618428 -103575236 - L1MA8 LINE L1 -10 6281 5815 294 95 0 0 chr1 178618428 178618470 -103575194 + (CA)n Simple_repeat Simple_repeat 2 43 0 9232 157 37 12 chr1 178618470 178620634 -103573030 - L1MA8 LINE L1 -476 5815 3579 3097 181 52 56 chr1 178621850 178622547 -103571117 - LTR8A LTR ERV1 0 727 34 627 214 21 21 chr1 178623651 178623796 -103569868 + Zaphod DNA AcHobo 3887 4031 0 340 327 48 30 chr1 178623822 178623990 -103569674 - HERVL LTR ERVL -2735 2288 2118 2779 131 44 5 chr1 178624011 178624423 -103569241 - MSTA LTR MaLR 0 428 1 846 342 35 4 chr1 178624578 178625015 -103568649 - HERVL LTR ERVL -2315 3170 2709 182 355 33 25 chr1 178625973 178626094 -103567570 + MIR SINE MIR 116 237 -25 183 263 102 141 chr1 178626118 178626389 -103567275 - L2 LINE L2 -833 2481 2240 1511 189 0 31 chr1 178626389 178626675 -103566989 + AluJo SINE Alu 1 277 -35 183 263 102 141 chr1 178626675 178626943 -103566721 - L2 LINE L2 -1074 2240 1963 2660 187 51 15 chr1 178627095 178627640 -103566024 - LTR8A LTR ERV1 -3 724 160 929 139 39 39 chr1 178627662 178627842 -103565822 - MER30 DNA MER1_type -50 180 1 421 168 112 91 chr1 178627853 178627996 -103565668 - LTR8A LTR ERV1 -581 146 1 883 293 29 0 chr1 178628044 178628290 -103565374 + MIR SINE MIR 8 260 -2 227 261 22 0 chr1 178628473 178628519 -103565145 + MER21B LTR ERV1 52 98 -765 534 264 26 39 chr1 178628552 178628707 -103564957 + MER21B LTR ERV1 96 248 -615 4490 149 16 6 chr1 178628713 178629417 -103564247 - MER50 LTR ERV1 -23 711 1 1767 203 0 3 chr1 178629562 178629873 -103563791 + AluJb SINE Alu 1 310 -2 394 222 15 89 chr1 178629873 178630008 -103563656 + MER21-int LTR ERV1 2357 2481 -1710 4500 149 36 16 chr1 178630046 178630785 -103562879 + MER4D LTR ERV1 1 754 -149 238 0 62 0 chr1 178630782 178630814 -103562850 + MER4D LTR ERV1 862 895 -8 * 391 243 98 92 chr1 178630826 178630999 -103562665 - MER77 LTR ERV1 -277 328 155 * 479 247 118 18 chr1 178630978 178631148 -103562516 - MER77 LTR ERV1 -378 227 41 3254 149 16 25 chr1 178631191 178631224 -103562440 + MER4B LTR ERV1 1 33 -746 3507 168 15 77 chr1 178631224 178631961 -103561703 + LTR8 LTR ERV1 1 691 0 3254 149 16 25 chr1 178631961 178632534 -103561130 + MER4B LTR ERV1 33 779 0 2463 273 34 36 chr1 178632534 178633310 -103560354 - L1M4 LINE L1 -5731 811 38 2206 158 70 57 chr1 178634107 178634298 -103559366 - LTR26B LTR ERV1 -69 462 275 1881 156 7 0 chr1 178634298 178634586 -103559078 - AluSq SINE Alu -23 290 1 2206 158 70 57 chr1 178634586 178634850 -103558814 - LTR26B LTR ERV1 -256 275 1 227 286 98 53 chr1 178634864 178634997 -103558667 + MIR SINE MIR 65 203 -59 1561 228 125 57 chr1 178635406 178636037 -103557627 - MER50 LTR ERV1 -51 683 10 2162 174 28 9 chr1 178636142 178636566 -103557098 + LTR56 LTR ERV1 13 444 -1 347 269 0 11 chr1 178637128 178637221 -103556443 + MIR SINE MIR 53 144 -118 4904 163 45 15 chr1 178637820 178638361 -103555303 + MER4D LTR ERV1 1 579 -324 19116 31 4 0 chr1 178638361 178641292 -103552372 - L1PA4 LINE L1 -3 6152 3210 4904 163 45 15 chr1 178641292 178641619 -103552045 + MER4D LTR ERV1 579 895 -8 21 36 0 0 chr1 178642324 178642352 -103551312 + AT_rich Low_complexity Low_complexity 1 28 0 312 27 0 0 chr1 178642445 178642482 -103551182 + (TC)n Simple_repeat Simple_repeat 2 38 0 563 308 133 23 chr1 178642683 178643030 -103550634 + L2 LINE L2 1450 1834 -1480 2259 162 13 3 chr1 178643044 178643433 -103550231 - L1MB7 LINE L1 -23 6161 5769 763 168 22 44 chr1 178643437 178643574 -103550090 - AluJo SINE Alu -177 135 2 606 179 75 84 chr1 178643581 178643783 -103549881 - L1MB7 LINE L1 -411 5773 5571 652 261 152 67 chr1 178643784 178644258 -103549406 + L2 LINE L2 2642 3139 -174 6497 102 0 5 chr1 178644301 178645458 -103548206 + L1PB1 LINE L1 5017 6168 0 300 314 248 0 chr1 178645507 178645644 -103548020 - MIR SINE MIR -90 172 2 357 280 203 7 chr1 178646210 178646353 -103547311 + MER5B DNA MER1_type 2 172 -6 979 246 65 57 chr1 178647656 178648026 -103545638 + MLT2D LTR ERVL 22 394 -70 342 0 0 0 chr1 178648036 178648074 -103545590 + (TG)n Simple_repeat Simple_repeat 1 38 0 462 243 120 70 chr1 178648115 178648374 -103545290 - L3 LINE CR1 -48 1529 1258 2486 124 21 13 chr1 178648525 178648897 -103544767 + THE1C LTR MaLR 1 375 0 305 295 0 0 chr1 178649394 178649455 -103544209 - MIR SINE MIR -65 143 83 30743 38 7 5 chr1 178650498 178656651 -103537013 + L1PA4 LINE L1 9 6152 -3 354 339 62 8 chr1 178656915 178657045 -103536619 - MER77-int LTR ERV1 -3758 433 297 * 1355 301 15 15 chr1 178657037 178657443 -103536221 - MER77-int LTR ERV1 -3773 418 13 1347 272 39 71 chr1 178657542 178658108 -103535556 - MER77 LTR ERV1 -6 599 52 2225 246 100 31 chr1 178658135 178658887 -103534777 - L1M4 LINE L1 -5713 829 26 26 30 0 0 chr1 178659032 178659065 -103534599 + AT_rich Low_complexity Low_complexity 1 33 0 1682 190 102 11 chr1 178659525 178659888 -103533776 - MSTD LTR MaLR 0 396 1 408 143 0 0 chr1 178660229 178660299 -103533365 + (CA)n Simple_repeat Simple_repeat 2 71 0 229 241 92 35 chr1 178661136 178661223 -103532441 + L3b LINE CR1 1296 1387 -196 304 263 11 53 chr1 178662265 178662360 -103531304 - MLT1J2 LTR MaLR -321 129 39 283 313 67 14 chr1 178662493 178662925 -103530739 - L1MEc LINE L1 -2666 3549 3095 638 316 53 14 chr1 178662991 178663408 -103530256 - L1MEc LINE L1 -3261 2954 2522 388 288 11 1 chr1 178664051 178664185 -103529479 - L1MEc LINE L1 -4252 1964 1578 21 57 0 0 chr1 178664922 178664957 -103528707 + AT_rich Low_complexity Low_complexity 1 35 0 2188 96 55 0 chr1 178665517 178665810 -103527854 - AluY SINE Alu -2 309 1 189 342 25 25 chr1 178666422 178666501 -103527163 + MIR SINE MIR 65 143 -65 1135 177 49 127 chr1 178668682 178669067 -103524597 + MLT1A2 LTR MaLR 20 374 0 2015 141 3 0 chr1 178669590 178669888 -103523776 - Tigger3b DNA MER2_type -1 1230 932 2272 123 48 67 chr1 178669888 178670383 -103523281 - LTR21A LTR ERV1 -19 486 1 2655 144 30 39 chr1 178670383 178670708 -103522956 - HERVFH21 LTR ERV1 0 6529 6208 306 0 0 0 chr1 178670708 178670742 -103522922 + (TG)n Simple_repeat Simple_repeat 1 34 0 2655 144 30 39 chr1 178670742 178670875 -103522789 - HERVFH21 LTR ERV1 -321 6208 6075 796 119 0 0 chr1 178670873 178670991 -103522673 - HERVFH21 LTR ERV1 -782 5747 5630 * 5033 122 23 5 chr1 178670966 178672095 -103521569 - HERVFH21 LTR ERV1 -1727 4802 3586 * 11814 185 47 33 chr1 178672094 178675970 -103517694 - HERVFH21 LTR ERV1 -2393 4261 5 2438 114 39 73 chr1 178675970 178676477 -103517187 - LTR21A LTR ERV1 -15 490 1 * 4943 138 68 19 chr1 178676477 178677287 -103516377 - Tigger3b DNA MER2_type -2092 936 77 1688 172 10 10 chr1 178677287 178677583 -103516081 - AluJo SINE Alu -16 296 1 4943 138 68 19 chr1 178677583 178677664 -103516000 - Tigger3b DNA MER2_type -2951 77 1 497 278 8 0 chr1 178677729 178677855 -103515809 + MIR SINE MIR 3 129 -133 1195 268 195 20 chr1 178677969 178678790 -103514874 - L2 LINE L2 -174 3139 2189 1173 216 54 131 chr1 178678797 178679302 -103514362 - MLT1E2 LTR MaLR -2 503 35 870 258 88 3 chr1 178679318 178679636 -103514028 - L2 LINE L2 -1134 2180 1836 951 190 35 11 chr1 178679637 178679866 -103513798 + L1M4 LINE L1 5330 5562 -616 268 348 76 0 chr1 178680014 178680132 -103513532 + MIR SINE MIR 49 175 -87 793 159 22 145 chr1 178680509 178680736 -103512928 - MLT1A1 LTR MaLR 0 365 167 241 67 0 0 chr1 178680826 178680856 -103512808 - MLT1A1 LTR MaLR -167 207 178 263 33 0 0 chr1 178680948 178680978 -103512686 - MLT1A1 LTR MaLR -169 196 167 253 35 0 0 chr1 178680979 178681008 -103512656 - MLT1A1 LTR MaLR -168 206 178 398 188 210 97 chr1 178681316 178681492 -103512172 - MLT1A1 LTR MaLR -169 196 1 22 0 0 0 chr1 178681689 178681711 -103511953 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr1 178681788 178681837 -103511827 + AT_rich Low_complexity Low_complexity 1 49 0 629 302 17 0 chr1 178685580 178685752 -103507912 - MER45A DNA AcHobo 0 178 4 387 169 19 144 chr1 178687464 178687624 -103506040 + MLT1D LTR MaLR 1 140 -486 1115 237 4 12 chr1 178687649 178687898 -103505766 + MLT1D LTR MaLR 259 505 0 214 302 20 22 chr1 178688748 178688877 -103504787 + MIR SINE MIR 84 240 -22 342 226 162 8 chr1 178688882 178689128 -103504536 + MLT1E1 LTR MaLR 1 287 -280 441 241 57 25 chr1 178689128 178689341 -103504323 + MLT1E1 LTR MaLR 405 563 -4 1221 192 27 9 chr1 178690341 178690565 -103503099 - MSTB LTR MaLR -2 424 197 30904 110 16 24 chr1 178690565 178696956 -103496708 + L1PA7 LINE L1 17 6446 -23 226 78 0 78 chr1 178696956 178697007 -103496657 - LTR66 LTR ERVL -166 444 398 * 250 109 0 0 chr1 178696971 178697017 -103496647 + LTR66 LTR ERVL 394 439 -171 339 130 0 0 chr1 178697017 178697071 -103496593 + (TA)n Simple_repeat Simple_repeat 2 55 0 3211 134 2 4 chr1 178697083 178697581 -103496083 + L1PA13 LINE L1 5667 6163 0 1242 172 0 18 chr1 178697585 178697806 -103495858 - MSTB LTR MaLR -209 217 1 447 252 29 0 chr1 178698706 178698809 -103494855 + LTR25 LTR ERV1 248 353 -441 350 231 0 103 chr1 178698790 178698907 -103494757 + LTR25 LTR ERV1 86 190 -379 * 898 203 17 13 chr1 178698985 178699211 -103494453 + LTR25 LTR ERV1 341 794 0 1244 165 45 78 chr1 178699937 178700270 -103493394 + MLT1C LTR MaLR 5 326 -141 1405 202 26 67 chr1 178700270 178700656 -103493008 + MLT1A2 LTR MaLR 1 370 -4 585 224 80 0 chr1 178700660 178700800 -103492864 + MLT1C LTR MaLR 339 467 0 1934 171 109 0 chr1 178700821 178701207 -103492457 + MSTB1 LTR MaLR 4 431 -1 433 261 53 43 chr1 178701291 178701479 -103492185 + MIR SINE MIR 24 213 -49 22 0 0 0 chr1 178701755 178701777 -103491887 + AT_rich Low_complexity Low_complexity 1 22 0 487 295 148 30 chr1 178701971 178702503 -103491161 - L1MC4a LINE L1 -1895 5913 5319 432 322 50 17 chr1 178702877 178703057 -103490607 + MIR SINE MIR 4 189 -73 1239 184 93 50 chr1 178703442 178703785 -103489879 + THE1C LTR MaLR 15 372 -3 267 314 118 6 chr1 178704045 178704214 -103489450 - MIR3 SINE MIR -4 204 17 1038 120 0 16 chr1 178705403 178705578 -103488086 + (TTTC)n Simple_repeat Simple_repeat 1 352 0 1038 120 0 16 chr1 178705578 178705761 -103487903 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 402 55 36 0 chr1 178705854 178705909 -103487755 + (TTTC)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr1 178706208 178706230 -103487434 + AT_rich Low_complexity Low_complexity 1 22 0 271 306 83 43 chr1 178708328 178708473 -103485191 - MIR SINE MIR -63 145 2 1561 309 59 31 chr1 178709134 178710308 -103483356 - L1M3a LINE L1 -5070 885 5 1357 266 40 16 chr1 178710303 178710804 -103482860 + L1M4 LINE L1 1335 1847 -4537 * 2239 271 48 9 chr1 178711033 178711838 -103481826 + L1M4 LINE L1 3554 4390 -1992 35878 112 7 14 chr1 178711857 178715872 -103477792 + L1PA6 LINE L1 11 3964 -2190 6980 115 20 33 chr1 178715872 178716957 -103476707 - MER11C LTR ERVK 0 1071 1 35878 112 7 14 chr1 178716957 178719131 -103474533 + L1PA6 LINE L1 3964 6153 -1 3385 241 67 17 chr1 178719119 178720703 -103472961 + L1M4 LINE L1 4379 6039 -381 * 2987 241 74 12 chr1 178720701 178721852 -103471812 - L1M4 LINE L1 -3005 3377 2153 * 489 156 31 21 chr1 178721867 178721963 -103471701 + MER4A LTR ERV1 1 97 -567 1736 144 3 54 chr1 178721964 178722324 -103471340 + MER4A LTR ERV1 263 662 -2 2771 121 131 88 chr1 178722329 178722992 -103470672 + MER4A-int LTR ERV1 1 692 -5906 297 304 28 79 chr1 178722994 178723208 -103470456 + MER4A-int LTR ERV1 374 576 -6182 333 164 0 33 chr1 178723330 178723391 -103470273 + MER4A-int LTR ERV1 751 809 -5789 232 143 0 48 chr1 178723433 178723475 -103470189 + LTR49 LTR ERV1 271 310 -285 1541 88 23 100 chr1 178723498 178723827 -103469837 + MER4A-int LTR ERV1 504 749 -4266 * 3876 90 57 14 chr1 178723826 178724459 -103469205 + MER4A-int LTR ERV1 1735 2394 -4204 943 92 0 13 chr1 178724457 178724609 -103469055 - MER4-int LTR ERV1 -3712 2886 2737 * 309 143 0 0 chr1 178724609 178724658 -103469006 + LTR8 LTR ERV1 1 49 -642 774 51 0 0 chr1 178724658 178724756 -103468908 + MER4-int LTR ERV1 2396 2493 -4105 1314 145 127 0 chr1 178724758 178724986 -103468678 - LTR8 LTR ERV1 -434 257 1 15943 112 70 26 chr1 178724986 178728113 -103465551 + MER4A-int LTR ERV1 1862 6596 -2 501 165 31 21 chr1 178728121 178728218 -103465446 + MER4A LTR ERV1 1 98 -566 1645 149 6 62 chr1 178728218 178728582 -103465082 + MER4A LTR ERV1 263 664 0 314 271 138 61 chr1 178728788 178729035 -103464629 + L2 LINE L2 348 613 -2701 1679 186 4 11 chr1 178729049 178729328 -103464336 + AluJb SINE Alu 1 277 -35 864 273 52 4 chr1 178729882 178730131 -103463533 - MIR SINE MIR 0 262 2 1005 216 35 135 chr1 178730155 178730585 -103463079 + MLT1B LTR MaLR 4 390 0 262 321 230 26 chr1 178730588 178731532 -103462132 + L2 LINE L2 1355 2490 -824 193 303 56 34 chr1 178731539 178731628 -103462036 - MIR SINE MIR -14 248 158 1989 191 36 6 chr1 178732879 178733240 -103460424 + MSTB LTR MaLR 55 426 0 1083 128 0 6 chr1 178733325 178733481 -103460183 - AluSg/x SINE Alu -14 298 144 438 228 10 0 chr1 178733481 178733582 -103460082 - L1M4 LINE L1 -1962 4184 4083 538 242 38 0 chr1 178733586 178733772 -103459892 - L1M4 LINE L1 -2991 3155 2963 16096 87 13 5 chr1 178733778 178736816 -103456848 - L1PA7 LINE L1 -20 6449 3387 306 0 0 0 chr1 178736861 178736895 -103456769 + (TTA)n Simple_repeat Simple_repeat 3 36 0 35766 37 2 0 chr1 178736895 178741948 -103451716 - L1PA3 LINE L1 -18 6137 1078 824 88 18 0 chr1 178741917 178742031 -103451633 - L1PA3 LINE L1 -6030 116 1 * 13413 130 31 30 chr1 178742015 178745324 -103448340 - L1PA7 LINE L1 -3021 3440 2 943 130 34 28 chr1 178745313 178745445 -103448219 - MSTB-int LTR MaLR -1437 214 79 * 1613 143 50 113 chr1 178745445 178745845 -103447819 + THE1C LTR MaLR 1 375 0 943 130 34 28 chr1 178745845 178745889 -103447775 - MSTB-int LTR MaLR -1572 79 37 1980 183 51 46 chr1 178745889 178746259 -103447405 - MSTB LTR MaLR -13 444 77 1061 39 39 0 chr1 178746259 178746412 -103447252 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1980 183 51 46 chr1 178746412 178746433 -103447231 - MSTB LTR MaLR -380 77 58 2118 126 15 101 chr1 178746433 178746829 -103446835 - THE1B LTR MaLR -2 362 1 12812 91 3 0 chr1 178746829 178748404 -103445260 - THE1B-int LTR MaLR 0 1580 1 2562 123 5 32 chr1 178748404 178748778 -103444886 - THE1B LTR MaLR 0 364 1 1669 174 4 7 chr1 178748778 178749053 -103444611 - AluJb SINE Alu -38 274 1 1980 183 51 46 chr1 178749053 178749103 -103444561 - MSTB LTR MaLR -398 59 5 1253 234 90 73 chr1 178751767 178752468 -103441196 + L1MC4 LINE L1 6881 7674 -216 265 201 16 160 chr1 178752589 178752783 -103440881 + L1MC4 LINE L1 7876 8041 -1 847 209 26 2 chr1 178753009 178753217 -103440447 - MLT2B1 LTR ERVL -195 219 1 2401 88 121 46 chr1 178753431 178753804 -103439860 + PABL_A LTR ERV1 1 401 -259 550 145 0 0 chr1 178753795 178753871 -103439793 + PABL_A LTR ERV1 585 660 0 * 3611 113 4 2 chr1 178753871 178754358 -103439306 + PABL_A-int LTR ERV1 1 488 -4527 12221 67 6 2 chr1 178754358 178755950 -103437714 + PABL_A-int LTR ERV1 2890 4487 -528 501 303 49 5 chr1 178755955 178756140 -103437524 - MIR SINE MIR -13 249 57 207 253 187 22 chr1 178756241 178756375 -103437289 + MIR SINE MIR 19 173 -67 268 250 0 0 chr1 178756999 178757075 -103436589 - L3 LINE CR1 -77 1500 1425 195 214 0 0 chr1 178757086 178757128 -103436536 - MIR3 SINE MIR -9 199 158 467 269 34 87 chr1 178757458 178757781 -103435883 - L2 LINE L2 0 3313 3008 1288 276 47 5 chr1 178757870 178758319 -103435345 - L2 LINE L2 -637 2677 2210 355 330 158 0 chr1 178758459 178758662 -103435002 - MIR SINE MIR -26 236 2 2461 147 11 37 chr1 178759622 178760058 -103433606 + MSTA LTR MaLR 4 428 0 1147 208 10 42 chr1 178760815 178761103 -103432561 + L1ME1 LINE L1 5550 5828 -336 1745 135 91 16 chr1 178761121 178761440 -103432224 - MER61A LTR ERV1 0 343 1 6123 124 13 8 chr1 178761440 178762692 -103430972 - MER61A-int LTR ERV1 0 5217 3915 2669 169 37 51 chr1 178762670 178763376 -103430288 - MER61A-int LTR ERV1 -3664 1553 7 * 1600 184 75 6 chr1 178763382 178763703 -103429961 - MER61A LTR ERV1 0 343 1 694 245 16 5 chr1 178763703 178763884 -103429780 + L1ME1 LINE L1 5841 6026 -140 279 275 44 11 chr1 178763976 178764067 -103429597 + L3 LINE CR1 1415 1508 -69 251 264 0 0 chr1 178764142 178764195 -103429469 + CT-rich Low_complexity Low_complexity 3 55 0 380 232 0 0 chr1 178764196 178764278 -103429386 + MER5A DNA MER1_type 108 189 0 215 307 30 10 chr1 178765354 178765455 -103428209 + MIR SINE MIR 60 162 -100 3541 138 36 0 chr1 178765455 178766005 -103427659 - LTR26 LTR ERV1 0 603 34 198 283 159 14 chr1 178766390 178766535 -103427129 - L3 LINE CR1 -169 1408 1243 342 115 0 0 chr1 178768142 178768194 -103425470 + (TC)n Simple_repeat Simple_repeat 1 52 0 2044 137 10 3 chr1 178768194 178768494 -103425170 - AluSg SINE Alu -8 302 1 272 202 0 2 chr1 178768992 178769050 -103424614 + L1ME1 LINE L1 6112 6162 -4 249 33 0 0 chr1 178769510 178769540 -103424124 + (TA)n Simple_repeat Simple_repeat 2 31 0 2045 133 3 0 chr1 178769540 178769834 -103423830 - AluSp SINE Alu -18 295 1 3938 188 54 8 chr1 178769853 178770665 -103422999 + L1MB8 LINE L1 5192 6059 -119 2189 108 0 23 chr1 178770665 178770970 -103422694 + AluSg SINE Alu 1 298 -12 3938 188 54 8 chr1 178770970 178771075 -103422589 + L1MB8 LINE L1 6059 6158 -20 606 308 28 9 chr1 178771131 178771345 -103422319 + MIR SINE MIR 35 252 -10 1654 176 0 35 chr1 178772453 178772765 -103420899 - AluJb SINE Alu -8 304 4 303 315 74 12 chr1 178772938 178773100 -103420564 - MIR SINE MIR -70 192 21 438 268 24 0 chr1 178773767 178773893 -103419771 - MIR SINE MIR -62 146 40 266 215 108 0 chr1 178774145 178774210 -103419454 - MIR SINE MIR -73 189 118 5662 156 63 8 chr1 178774490 178775652 -103418012 + L1MA8 LINE L1 4912 6176 -115 228 35 0 0 chr1 178775652 178775681 -103417983 + (CA)n Simple_repeat Simple_repeat 1 29 0 5662 156 63 8 chr1 178775681 178775804 -103417860 + L1MA8 LINE L1 6176 6291 0 715 256 40 0 chr1 178775977 178776176 -103417488 - MER63A DNA MER1_type 0 210 4 550 88 0 0 chr1 178777466 178777534 -103416130 - L1M2 LINE L1 -705 5592 5525 703 150 0 0 chr1 178777534 178777646 -103416018 + L1MA3 LINE L1 6193 6305 0 321 203 25 85 chr1 178777999 178778117 -103415547 - MER5B DNA MER1_type 0 178 68 1997 125 9 18 chr1 178778636 178778964 -103414700 - L1PA8 LINE L1 0 6172 5848 644 132 39 39 chr1 178779014 178779143 -103414521 + MSTC LTR MaLR 3 131 -297 586 178 85 0 chr1 178779206 178779251 -103414413 + MSTC LTR MaLR 90 130 -298 1990 160 9 68 chr1 178779251 178779676 -103413988 + MER57A LTR ERV1 1 400 -3 586 178 85 0 chr1 178779676 178779759 -103413905 + MSTC LTR MaLR 130 229 -199 1102 160 6 8 chr1 178779912 178780103 -103413561 + MSTC LTR MaLR 215 362 -3 231 32 0 0 chr1 178780108 178780139 -103413525 - MSTC LTR MaLR 0 428 398 2073 138 3 0 chr1 178780370 178780681 -103412983 + AluSx SINE Alu 1 312 0 598 275 70 22 chr1 178780709 178780938 -103412726 - MIR SINE MIR -18 244 5 28 48 0 0 chr1 178782102 178782144 -103411520 + AT_rich Low_complexity Low_complexity 1 42 0 44 70 0 0 chr1 178782202 178782288 -103411376 + AT_rich Low_complexity Low_complexity 1 86 0 415 293 158 10 chr1 178782331 178782498 -103411166 + L1 LINE L1 3646 3787 -2359 198 0 0 0 chr1 178782498 178782520 -103411144 + (GGAAA)n Simple_repeat Simple_repeat 4 25 0 415 293 158 10 chr1 178782520 178782649 -103411015 + L1 LINE L1 3787 3986 -2160 6632 81 8 1 chr1 178782657 178784341 -103409323 - L1PA10 LINE L1 0 6168 4478 5373 232 54 49 chr1 178784353 178786196 -103407468 - L1P3 LINE L1 -4633 1818 10 24 32 0 0 chr1 178786670 178786701 -103406963 + AT_rich Low_complexity Low_complexity 1 31 0 849 138 81 52 chr1 178787101 178787275 -103406389 + LTR47A LTR ERVL 274 452 0 1827 168 121 16 chr1 178787568 178787955 -103405709 + MSTA LTR MaLR 1 428 0 1847 157 32 37 chr1 178788503 178788878 -103404786 - THE1C LTR MaLR -2 373 1 4474 122 37 15 chr1 178789221 178789360 -103404304 - L1 LINE L1 -3626 3939 3804 1611 192 0 11 chr1 178789360 178789670 -103403994 - AluSx SINE Alu 0 307 1 4474 122 37 15 chr1 178789670 178790460 -103403204 - L1 LINE L1 -3761 3804 2895 5396 115 23 10 chr1 178790480 178791313 -103402351 - L1 LINE L1 -4895 2670 1827 385 302 59 16 chr1 178844017 178844272 -103349392 + L1M4 LINE L1 2704 2969 -3177 304 340 76 62 chr1 178844461 178844802 -103348862 + L1M4 LINE L1 3181 3526 -2620 2987 192 2 0 chr1 178844811 178845416 -103348248 - L1PA3 LINE L1 0 6155 5550 547 266 17 34 chr1 178845814 178846047 -103347617 - HAL1b LINE L1 -418 930 702 393 258 79 64 chr1 178846097 178846306 -103347358 - HAL1b LINE L1 -775 573 356 1749 153 4 0 chr1 178846306 178846567 -103347097 - AluSx SINE Alu -15 297 36 393 258 79 64 chr1 178846567 178846687 -103346977 - HAL1b LINE L1 -992 356 239 307 320 50 33 chr1 178846696 178846877 -103346787 - L1MEd LINE L1 -4969 1150 967 211 104 42 0 chr1 178847783 178847831 -103345833 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 275 307 44 117 chr1 178847903 178848108 -103345556 - MIR SINE MIR 0 262 73 450 261 74 39 chr1 178850014 178850244 -103343420 + L2 LINE L2 3063 3300 -13 317 138 31 0 chr1 178851890 178851955 -103341709 + L1PA10 LINE L1 6102 6168 0 400 320 107 44 chr1 178852097 178852303 -103341361 - L2 LINE L2 -39 3233 3015 395 298 84 51 chr1 178852733 178852948 -103340716 + MIR SINE MIR 4 225 -37 764 258 26 34 chr1 178853548 178853816 -103339848 - L1MD3 LINE L1 -5 7990 7725 943 296 67 24 chr1 178853834 178854297 -103339367 - L1MD3 LINE L1 -163 7832 7350 468 250 47 35 chr1 178854347 178854519 -103339145 - L1MC3 LINE L1 -744 7041 6868 5907 156 24 9 chr1 178855559 178857202 -103336462 + L1PB1 LINE L1 4129 5803 -348 189 0 0 0 chr1 178857202 178857223 -103336441 + (TG)n Simple_repeat Simple_repeat 2 22 0 5907 156 24 9 chr1 178857223 178857571 -103336093 + L1PB1 LINE L1 5803 6144 -7 242 266 27 71 chr1 178857671 178857855 -103335809 - L1ME4a LINE L1 -106 6015 5840 2104 110 24 0 chr1 178857971 178858262 -103335402 - AluSp SINE Alu -11 302 5 597 316 37 22 chr1 178858268 178858537 -103335127 - L1MC3 LINE L1 -1983 5825 5553 5437 174 25 9 chr1 178858547 178859730 -103333934 + L1MA6 LINE L1 5105 6300 0 23 0 0 0 chr1 178859819 178859842 -103333822 + AT_rich Low_complexity Low_complexity 1 23 0 517 208 132 19 chr1 178860111 178860248 -103333416 - HAL1b LINE L1 -501 847 676 489 234 16 65 chr1 178860248 178860432 -103333232 - MER5B DNA MER1_type 0 178 4 517 208 132 19 chr1 178860432 178860506 -103333158 - HAL1b LINE L1 -672 676 612 2478 63 3 0 chr1 178861450 178861749 -103331915 - AluY SINE Alu -11 300 1 234 209 182 45 chr1 178861926 178862058 -103331606 - MIR SINE MIR -67 141 16 330 219 184 9 chr1 178862122 178862236 -103331428 + MIR SINE MIR 13 146 -116 265 220 0 0 chr1 178862236 178862286 -103331378 + PABL_B LTR ERV1 1 50 -617 908 295 62 58 chr1 178862314 178862955 -103330709 + PABL_B LTR ERV1 24 667 0 242 322 25 8 chr1 178862955 178863073 -103330591 + MIR SINE MIR 143 262 0 1242 246 107 25 chr1 178863402 178863805 -103329859 + MLT2B2 LTR ERVL 1 436 -79 332 125 0 0 chr1 178864193 178864241 -103329423 - MLT2D LTR ERVL 0 414 367 212 323 0 0 chr1 178864295 178864360 -103329304 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 707 237 163 71 chr1 178864361 178864656 -103329008 - MLT2B1 LTR ERVL -50 470 149 510 201 181 0 chr1 178865580 178865724 -103327940 + MER5A DNA MER1_type 14 183 -6 180 97 0 0 chr1 178865862 178865893 -103327771 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 422 268 56 34 chr1 178867203 178867382 -103326282 + MIR SINE MIR 21 203 -59 190 250 0 0 chr1 178867434 178867482 -103326182 - MIR SINE MIR -12 250 203 21 36 0 0 chr1 178867649 178867677 -103325987 + AT_rich Low_complexity Low_complexity 1 28 0 476 240 158 12 chr1 178867770 178867941 -103325723 + MIR SINE MIR 8 203 -59 973 218 46 28 chr1 178868304 178868762 -103324902 + MLT1D LTR MaLR 3 505 0 1244 228 82 15 chr1 178868772 178869114 -103324550 + MLT1A1 LTR MaLR 1 365 0 210 317 98 8 chr1 178869988 178870111 -103323553 - MIR SINE MIR -76 186 53 518 279 75 27 chr1 178872445 178872766 -103320898 + L1ME LINE L1 5303 5641 -480 532 176 0 0 chr1 178872769 178872854 -103320810 + AluJ/FLAM SINE Alu 2 86 -226 510 308 13 28 chr1 178873385 178873609 -103320055 + MIR SINE MIR 42 261 -1 339 331 20 20 chr1 178874359 178874507 -103319157 - MIR3 SINE MIR -7 201 54 281 344 33 25 chr1 178876037 178876159 -103317505 - L2 LINE L2 -12 3260 3138 226 318 0 0 chr1 178876403 178876469 -103317195 + MIR SINE MIR 99 164 -98 2478 63 3 0 chr1 178876646 178876945 -103316719 + AluY SINE Alu 1 300 -11 277 341 23 0 chr1 178877840 178877969 -103315695 - L3 LINE CR1 -21 1556 1425 1135 279 87 44 chr1 178878352 178879191 -103314473 - L2 LINE L2 0 3313 2210 363 318 169 0 chr1 178879333 178879534 -103314130 - MIR SINE MIR -26 236 2 2175 120 3 16 chr1 178880343 178880659 -103313005 + AluSx SINE Alu 1 312 0 2532 138 16 21 chr1 178880848 178881275 -103312389 + MSTA LTR MaLR 4 428 0 1077 231 13 39 chr1 178882036 178882344 -103311320 + L1ME1 LINE L1 5550 5849 -315 1823 122 82 12 chr1 178882345 178882664 -103311000 - MER61A LTR ERV1 -1 342 2 20821 109 38 17 chr1 178882665 178883703 -103309961 - MER61A-int LTR ERV1 0 6659 5644 2610 68 0 0 chr1 178883703 178884014 -103309650 - AluY SINE Alu 0 311 1 20821 109 38 17 chr1 178884014 178885136 -103308528 - MER61A-int LTR ERV1 -1015 5644 4546 5888 64 21 1 chr1 178885136 178885887 -103307777 + MER4E LTR ERV1 1 766 0 20821 109 38 17 chr1 178885887 178887445 -103306219 - MER61A-int LTR ERV1 -2113 4546 3021 221 28 83 0 chr1 178887445 178887481 -103306183 + A-rich Low_complexity Low_complexity 2 40 0 20821 109 38 17 chr1 178887481 178887932 -103305732 - MER61A-int LTR ERV1 -3638 3021 7 1795 138 80 28 chr1 178887938 178888264 -103305400 - MER61A LTR ERV1 0 343 1 692 237 16 16 chr1 178888264 178888447 -103305217 + L1ME1 LINE L1 5841 6026 -140 211 315 45 9 chr1 178888519 178888630 -103305034 + L3 LINE CR1 1394 1508 -69 201 215 159 37 chr1 178888738 178888845 -103304819 - MER5A DNA MER1_type -69 120 1 191 284 173 0 chr1 178889850 178889931 -103303733 + MIR SINE MIR 8 102 -160 1217 126 16 6 chr1 178889976 178890159 -103303505 - LTR26 LTR ERV1 -38 565 381 670 201 98 23 chr1 178891897 178892071 -103301593 - MIR SINE MIR -56 206 20 2193 124 0 0 chr1 178892116 178892414 -103301250 - AluSx SINE Alu -14 298 1 7228 109 19 18 chr1 178892934 178894004 -103299660 + MER11C LTR ERVK 1 1071 0 1896 168 120 111 chr1 178895593 178896249 -103297415 + MER4A LTR ERV1 3 664 0 499 252 110 0 chr1 178897052 178897207 -103296457 - MIR SINE MIR -70 192 21 234 275 14 113 chr1 178897701 178897843 -103295821 + L2 LINE L2 2957 3084 -188 219 358 57 0 chr1 178899652 178899775 -103293889 - MIR3 SINE MIR -50 158 29 251 257 189 36 chr1 178901384 178901691 -103291973 - L1ME4a LINE L1 -1 6120 5767 2574 66 0 0 chr1 178901695 178902000 -103291664 - AluY SINE Alu -6 305 1 288 254 14 0 chr1 178902049 178902120 -103291544 - L1ME4a LINE L1 -449 5672 5601 1844 172 0 0 chr1 178902338 178902623 -103291041 + AluSx SINE Alu 1 285 -27 477 0 0 0 chr1 178902623 178902676 -103290988 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 360 275 99 21 chr1 178902732 178902874 -103290790 - MER5A DNA MER1_type -34 155 3 230 282 154 32 chr1 178903759 178903915 -103289749 - MIR3 SINE MIR -1 207 33 7691 35 0 0 chr1 178904506 178905620 -103288044 + L1PA4 LINE L1 5042 6155 0 276 130 0 0 chr1 178905891 178905937 -103287727 + (TA)n Simple_repeat Simple_repeat 2 47 0 219 173 0 39 chr1 178906104 178906156 -103287508 + (TG)n Simple_repeat Simple_repeat 2 51 0 244 317 188 20 chr1 178906333 178906535 -103287129 - L2 LINE L2 -456 2858 2623 393 299 103 6 chr1 178906709 178906883 -103286781 + L2 LINE L2 3115 3305 -8 266 286 105 29 chr1 178907031 178907136 -103286528 - L2 LINE L2 0 3313 3201 336 280 259 16 chr1 178907239 178907432 -103286232 - MIR SINE MIR -6 256 17 26 30 0 0 chr1 178907842 178907875 -103285789 + AT_rich Low_complexity Low_complexity 1 33 0 299 293 107 23 chr1 178908770 178908985 -103284679 + L1ME LINE L1 5593 5825 -296 5927 263 66 32 chr1 178909572 178910964 -103282700 - L1ME LINE L1 -441 5729 4386 2296 108 0 0 chr1 178910964 178911260 -103282404 - AluSq SINE Alu -17 296 1 5927 263 66 32 chr1 178911260 178911998 -103281666 - L1ME LINE L1 -1784 4386 3675 7061 22 4 0 chr1 178911998 178912768 -103280896 + L1PA3 LINE L1 5383 6155 0 5927 263 66 32 chr1 178912768 178913898 -103279766 - L1ME LINE L1 -2495 3675 2356 253 148 0 66 chr1 178914051 178914112 -103279552 + MLT1G1 LTR MaLR 534 590 -5 252 336 68 38 chr1 178914435 178914700 -103278964 + MLT1I LTR MaLR 99 371 -38 2207 112 0 0 chr1 178914856 178915150 -103278514 + AluY SINE Alu 1 294 -17 5367 33 7 0 chr1 178915330 178915928 -103277736 - L1PA4 LINE L1 -4 6151 5550 652 270 17 34 chr1 178916317 178916554 -103277110 - HAL1b LINE L1 -418 930 698 513 249 82 67 chr1 178916600 178916809 -103276855 - HAL1b LINE L1 -775 573 356 1732 153 4 0 chr1 178916809 178917070 -103276594 - AluSx SINE Alu -15 297 36 513 249 82 67 chr1 178917070 178917190 -103276474 - HAL1b LINE L1 -992 356 239 211 104 42 0 chr1 178918286 178918334 -103275330 + (TTTG)n Simple_repeat Simple_repeat 4 53 0 259 307 44 117 chr1 178918406 178918611 -103275053 - MIR SINE MIR 0 262 73 410 274 100 47 chr1 178919226 178919416 -103274248 + MIR SINE MIR 13 212 -50 1095 215 30 25 chr1 178919540 178919865 -103273799 - L1MB7 LINE L1 -51 6123 5811 1828 186 0 0 chr1 178919920 178920226 -103273438 + AluJb SINE Alu 1 306 -6 1820 164 0 24 chr1 178920915 178921213 -103272451 + AluJb SINE Alu 1 291 -21 471 335 101 9 chr1 178921220 178921447 -103272217 + MIR SINE MIR 11 258 -4 4541 185 94 30 chr1 178921733 178922710 -103270954 + MER45B DNA AcHobo 1 1040 0 2282 104 3 0 chr1 178923062 178923360 -103270304 - AluY SINE Alu -12 299 1 242 352 128 20 chr1 178923778 178924082 -103269582 + L2 LINE L2 2419 2755 -559 653 52 0 0 chr1 178924436 178924513 -103269151 + Alu SINE Alu 224 300 -12 211 260 90 79 chr1 178924516 178924693 -103268971 - MIR SINE MIR -66 196 18 756 301 147 10 chr1 178924747 178925143 -103268521 + MLT1J2 LTR MaLR 1 450 0 257 244 103 0 chr1 178925381 178925459 -103268205 - MIR SINE MIR -2 260 175 * 895 326 25 22 chr1 178925458 178925863 -103267801 - L2 LINE L2 -8 3305 2900 342 301 63 23 chr1 178925843 178926019 -103267645 - MIR SINE MIR -62 146 3 * 378 0 0 0 chr1 178926049 178926091 -103267573 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 235 139 37 chr1 178926453 178926640 -103267024 + LTR67 LTR ERVL 352 557 0 2149 64 75 3 chr1 178926758 178927040 -103266624 - AluY SINE Alu -9 302 1 2372 289 99 15 chr1 178927692 178928990 -103264674 + ERVL LTR ERVL 2957 4401 -1363 920 280 130 40 chr1 178928993 178929704 -103263960 - L2 LINE L2 0 3313 2528 505 203 80 145 chr1 178929710 178930199 -103263465 - L1MC5 LINE L1 -44 7917 7461 * 633 187 0 30 chr1 178930194 178930328 -103263336 - L1MA4 LINE L1 -35 6265 6136 550 278 64 45 chr1 178930367 178930741 -103262923 - L1MC5 LINE L1 -465 7496 7116 364 302 81 43 chr1 178930777 178931012 -103262652 - L1MC4a LINE L1 -1068 6740 6497 228 212 229 17 chr1 178931055 178931173 -103262491 + LTR67 LTR ERVL 408 550 -7 284 255 174 20 chr1 178932989 178933087 -103260577 + MIR3 SINE MIR 11 123 -85 335 206 130 11 chr1 178933617 178933709 -103259955 + L1MEc LINE L1 49 151 -6245 921 289 127 32 chr1 178933768 178934266 -103259398 + L1MEc LINE L1 281 825 -5571 252 143 0 0 chr1 178934266 178934308 -103259356 + (TA)n Simple_repeat Simple_repeat 2 43 0 191 319 0 0 chr1 178934309 178934356 -103259308 + L2 LINE L2 3255 3301 -12 556 223 29 14 chr1 178934470 178934609 -103259055 + L2 LINE L2 3173 3313 0 1190 187 0 10 chr1 178935341 178935544 -103258120 + AluJb SINE Alu 85 285 -27 1929 132 0 0 chr1 178935606 178935871 -103257793 + AluSx SINE Alu 1 265 -47 459 0 0 0 chr1 178935871 178935922 -103257742 + (CATA)n Simple_repeat Simple_repeat 2 52 0 571 274 77 17 chr1 178938445 178938679 -103254985 - L2 LINE L2 0 3313 3066 620 198 275 0 chr1 178939224 178939391 -103254273 + MIR SINE MIR 20 232 -30 1752 215 16 37 chr1 178939548 178939930 -103253734 + MLT1A2 LTR MaLR 1 374 0 270 300 0 0 chr1 178940130 178940200 -103253464 + MIR SINE MIR 157 226 -36 1361 167 0 29 chr1 178940482 178940721 -103252943 + AluJo SINE Alu 65 296 -16 830 276 159 12 chr1 178941020 178941353 -103252311 - L2 LINE L2 -1184 2130 1749 203 182 0 0 chr1 178941384 178941417 -103252247 + polypyrimidine Low_complexity Low_complexity 3 35 0 1107 89 11 17 chr1 178941417 178941597 -103252067 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1376 189 93 68 chr1 178946016 178946382 -103247282 + MER34C LTR ERV1 31 413 -172 929 196 167 10 chr1 178946382 178946586 -103247078 - MER46A DNA MER2_type 0 236 1 1376 189 93 68 chr1 178946586 178946690 -103246974 + MER34C LTR ERV1 413 513 -72 2184 119 0 0 chr1 178946690 178946984 -103246680 - AluY SINE Alu -13 298 5 1028 221 133 22 chr1 178947035 178947458 -103246206 - LTR29 LTR ERV1 0 607 137 295 244 56 11 chr1 178947461 178947551 -103246113 - MER34 LTR ERV1 -448 94 1 2466 192 78 10 chr1 178947906 178948032 -103245632 + MER67C LTR ERV1 4 120 -590 7466 60 11 0 chr1 178948032 178949420 -103244244 + L1PA6 LINE L1 4757 6154 0 2466 192 78 10 chr1 178949420 178949926 -103243738 + MER67C LTR ERV1 120 706 -4 2052 137 7 3 chr1 178951071 178951371 -103242293 - AluSx SINE Alu -11 301 1 449 295 127 6 chr1 178952662 178952828 -103240836 + MIR SINE MIR 8 193 -69 752 256 54 25 chr1 178952946 178953188 -103240476 + MIR SINE MIR 1 249 -13 370 123 31 0 chr1 178955099 178955164 -103238500 + L1PA10 LINE L1 6102 6168 0 441 54 0 0 chr1 178955253 178955309 -103238355 + (TA)n Simple_repeat Simple_repeat 1 56 0 400 320 107 44 chr1 178955342 178955548 -103238116 - L2 LINE L2 -39 3233 3015 384 293 111 30 chr1 178955978 178956176 -103237488 + MIR SINE MIR 4 217 -45 957 217 36 32 chr1 178956797 178957078 -103236586 - L1MD3 LINE L1 -5 7990 7709 368 240 66 0 chr1 178957078 178957199 -103236465 - L1MD3 LINE L1 -158 7837 7709 2994 219 91 10 chr1 178957199 178958067 -103235597 - L1MC3 LINE L1 -160 7625 6688 316 270 9 9 chr1 178958706 178958817 -103234847 - L1MC4 LINE L1 0 8042 7932 945 263 61 61 chr1 178958827 178959129 -103234535 + MER115 DNA AcHobo 300 604 -89 2345 68 0 3 chr1 178959129 178959423 -103234241 - AluY SINE Alu -18 293 1 945 263 61 61 chr1 178959423 178959511 -103234153 + MER115 DNA AcHobo 603 690 -3 1700 271 64 24 chr1 178960020 178961250 -103232414 - Charlie8 DNA MER1_type -2 2415 1064 502 233 23 0 chr1 178961258 178961387 -103232277 + MLT1H LTR MaLR 12 143 -406 234 218 11 35 chr1 178961957 178962044 -103231620 + L1MEc LINE L1 2353 2437 -3959 351 402 0 43 chr1 178962096 178962447 -103231217 + L1M3a LINE L1 1648 1983 -5503 2137 235 51 91 chr1 178962911 178964035 -103229629 + L1M3a LINE L1 1911 2989 -4576 1956 214 35 2 chr1 178964072 178964559 -103229105 + L1MEc LINE L1 2564 3066 -3149 * 3398 198 8 1 chr1 178964551 178965302 -103228362 + L1MEc LINE L1 3491 4246 -1969 * 9409 29 0 0 chr1 178965298 178966490 -103227174 - L1P LINE L1 -2078 4068 2877 4030 33 5 2 chr1 178966486 178967069 -103226595 + L1P1 LINE L1 5199 5783 -372 * 3292 155 5 9 chr1 178967040 178967930 -103225734 + L1PB2 LINE L1 4903 5791 -360 * 554 134 31 0 chr1 178967930 178968057 -103225607 + (TA)n Simple_repeat Simple_repeat 2 132 0 2451 109 5 11 chr1 178968068 178968444 -103225220 + L1PB2 LINE L1 5776 6149 -2 5248 185 16 3 chr1 178968444 178970087 -103223577 + L1MA4 LINE L1 4699 6363 -6 1846 263 66 10 chr1 178970102 178970903 -103222761 + L1M4 LINE L1 2318 3163 -2983 569 206 19 19 chr1 178970910 178971070 -103222594 + L1M4 LINE L1 4097 4256 -1890 1781 164 101 14 chr1 178971084 178971431 -103222233 - MSTB LTR MaLR 0 426 50 223 258 30 0 chr1 178971977 178972043 -103221621 + (TG)n Simple_repeat Simple_repeat 2 69 0 362 298 249 26 chr1 178972758 178973686 -103219978 - L2 LINE L2 -825 2489 1330 1468 192 18 73 chr1 178973686 178973910 -103219754 - MLT1A2 LTR MaLR 0 374 180 216 0 0 0 chr1 178973910 178973934 -103219730 + (GA)n Simple_repeat Simple_repeat 1 24 0 1468 192 18 73 chr1 178973934 178974105 -103219559 - MLT1A2 LTR MaLR -194 180 1 362 298 249 26 chr1 178974105 178974132 -103219532 - L2 LINE L2 -1984 1330 1316 980 256 39 12 chr1 178974132 178974386 -103219278 + MIR SINE MIR 2 262 0 345 288 120 60 chr1 178975145 178975395 -103218269 - L2 LINE L2 -2704 610 346 26 0 0 0 chr1 178975538 178975564 -103218100 + AT_rich Low_complexity Low_complexity 1 26 0 1811 234 33 54 chr1 178975571 178976475 -103217189 + L1M4c LINE L1 2124 3377 -3005 * 1824 217 67 14 chr1 178976473 178977272 -103216392 - L1M4 LINE L1 -381 5803 4963 373 201 24 53 chr1 178977268 178977437 -103216227 - L1M4 LINE L1 -3184 2962 2799 * 510 281 56 0 chr1 178977430 178977608 -103216056 - L1M4 LINE L1 -1258 4888 4701 266 177 13 114 chr1 178977998 178978031 -103215633 - MER5B DNA MER1_type -10 168 133 1455 52 0 0 chr1 178978031 178978203 -103215461 - AluY SINE Alu 0 311 140 266 177 13 114 chr1 178978203 178978248 -103215416 - MER5B DNA MER1_type -45 133 98 585 237 97 53 chr1 178980035 178980263 -103213401 - L3 LINE CR1 -3 1574 1337 23 0 0 0 chr1 178980899 178980922 -103212742 + AT_rich Low_complexity Low_complexity 1 23 0 269 333 82 34 chr1 178980922 178981069 -103212595 - MIR SINE MIR -46 216 63 21 36 0 0 chr1 178982952 178982980 -103210684 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 178984088 178984111 -103209553 + AT_rich Low_complexity Low_complexity 1 23 0 319 303 98 40 chr1 178984583 178984959 -103208705 + L1MEc LINE L1 1900 2297 -4099 2095 179 20 0 chr1 178985012 178985370 -103208294 - MLT1A1 LTR MaLR 0 365 1 487 303 102 28 chr1 178985419 178985703 -103207961 + L1MEc LINE L1 2529 2833 -3382 22 0 0 0 chr1 178987016 178987038 -103206626 + AT_rich Low_complexity Low_complexity 1 22 0 309 285 74 16 chr1 178987117 178987359 -103206305 - L1ME4a LINE L1 -124 5997 5742 191 222 0 14 chr1 178987560 178987632 -103206032 + CT-rich Low_complexity Low_complexity 2 72 0 394 333 6 32 chr1 178987743 178987899 -103205765 - MER5A DNA MER1_type -36 153 2 350 78 31 31 chr1 178988167 178988231 -103205433 + L1PB1 LINE L1 6088 6151 0 346 292 18 78 chr1 178988289 178988508 -103205156 - L1ME4a LINE L1 -76 6045 5840 233 229 57 0 chr1 178988547 178988617 -103205047 - L1ME3 LINE L1 -7 6155 6082 463 346 30 15 chr1 178988619 178988888 -103204776 - L1MC4a LINE L1 -1983 5825 5553 5135 172 11 20 chr1 178988898 178990096 -103203568 + L1MA6 LINE L1 5105 6300 0 23 0 0 0 chr1 178990185 178990208 -103203456 + AT_rich Low_complexity Low_complexity 1 23 0 526 247 139 47 chr1 178990487 178990621 -103203043 - HAL1b LINE L1 -514 834 714 497 223 46 46 chr1 178990621 178990796 -103202868 - MER5B DNA MER1_type 0 178 4 526 247 139 47 chr1 178990796 178991127 -103202537 - HAL1b LINE L1 -634 714 326 436 284 28 43 chr1 178991404 178991545 -103202119 - L2 LINE L2 -13 3259 3121 633 244 128 0 chr1 178993616 178993780 -103199884 - MIR SINE MIR -58 204 20 2304 101 7 0 chr1 178993825 178994121 -103199543 - AluSx SINE Alu -14 298 1 386 348 68 48 chr1 178994581 178994891 -103198773 + L2 LINE L2 2957 3272 0 2197 113 3 0 chr1 178995207 178995498 -103198166 + AluSg SINE Alu 1 292 -18 1563 129 36 153 chr1 178996529 178997001 -103196663 + MER4A LTR ERV1 1 417 -247 578 158 171 13 chr1 178997025 178997183 -103196481 + MER4C LTR ERV1 277 459 -6 649 210 108 0 chr1 178997993 178998150 -103195514 - MIR SINE MIR -69 193 20 246 309 20 60 chr1 178998153 178998354 -103195310 + L2 LINE L2 1897 2089 -1225 250 294 20 98 chr1 178998646 178998799 -103194865 + L2 LINE L2 2957 3097 -175 225 293 153 38 chr1 178999312 178999469 -103194195 - MIR3 SINE MIR -1 207 33 23 54 0 0 chr1 179000246 179000283 -103193381 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr1 179001013 179001040 -103192624 + AT_rich Low_complexity Low_complexity 1 27 0 191 351 21 21 chr1 179001053 179001147 -103192517 - MIR3 SINE MIR -109 99 6 446 371 48 11 chr1 179002274 179002460 -103191204 - L2 LINE L2 0 3272 3080 367 316 120 40 chr1 179002785 179003060 -103190604 - L1MC/D LINE L1 -2081 5727 5431 358 234 13 0 chr1 179003079 179003156 -103190508 - L2 LINE L2 0 3313 3236 32 81 0 0 chr1 179003435 179003509 -103190155 + AT_rich Low_complexity Low_complexity 1 74 0 359 293 182 29 chr1 179003587 179004000 -103189664 - L1MC/D LINE L1 -1303 4843 4368 349 326 99 29 chr1 179004198 179004471 -103189193 - L1MC/D LINE L1 -1938 4208 3917 1710 186 40 0 chr1 179004507 179004803 -103188861 - AluJb SINE Alu -4 308 1 293 350 138 8 chr1 179005538 179005661 -103188003 - L2 LINE L2 0 3272 3134 291 143 20 0 chr1 179005858 179005907 -103187757 + MIR SINE MIR 183 232 -30 2132 324 43 10 chr1 179007039 179007904 -103185760 + ERVL LTR ERVL 2926 3818 -1946 720 271 48 0 chr1 179008327 179008515 -103185149 - MIR SINE MIR -3 259 63 235 242 15 0 chr1 179008632 179008698 -103184966 + MLT1K LTR MaLR 512 578 -10 378 0 0 0 chr1 179009824 179009866 -103183798 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 767 167 0 15 chr1 179009866 179009989 -103183675 - FLAM_C SINE Alu -189 123 1 302 221 148 25 chr1 179010985 179011107 -103182557 + L1ME4a LINE L1 5751 5887 -234 1765 272 79 47 chr1 179011287 179012719 -103180945 + L1ME LINE L1 498 1883 -4657 1624 100 5 0 chr1 179012719 179012939 -103180725 + AluSq SINE Alu 81 301 -12 1765 272 79 47 chr1 179012939 179014280 -103179384 + L1ME LINE L1 1883 3347 -3193 253 213 39 39 chr1 179014263 179014390 -103179274 + L1ME LINE L1 2406 2532 -4008 * 250 261 0 0 chr1 179014395 179014460 -103179204 + L1ME LINE L1 3356 3420 -3120 * 1758 141 50 32 chr1 179014456 179015101 -103178563 + L1M2 LINE L1 4936 5607 -693 1956 109 0 0 chr1 179015101 179015367 -103178297 + AluSq SINE Alu 1 266 -47 702 281 74 23 chr1 179015396 179015827 -103177837 + L1M4 LINE L1 4799 5251 -895 1462 227 16 26 chr1 179015833 179016220 -103177444 - MER88 LTR ERVL 0 464 82 284 307 6 17 chr1 179016306 179016482 -103177182 + L1M4 LINE L1 4882 5055 -1091 5459 157 24 24 chr1 179016500 179018315 -103175349 - L1MA4 LINE L1 -11 7708 5885 * 17332 128 39 21 chr1 179018307 179020115 -103173549 + L1P3 LINE L1 1148 2923 -4661 190 0 67 0 chr1 179020115 179020145 -103173519 + (CAA)n Simple_repeat Simple_repeat 2 33 0 17332 128 39 21 chr1 179020145 179021535 -103172129 + L1P3 LINE L1 2923 5187 -2397 7997 218 68 32 chr1 179021529 179021747 -103171917 - L1MA4 LINE L1 -1674 5891 5682 * 1046 81 17 17 chr1 179021747 179021920 -103171744 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 7997 218 68 32 chr1 179021920 179022857 -103170807 - L1MA4 LINE L1 -1883 5682 4780 1567 209 10 13 chr1 179022857 179023168 -103170496 + AluJb SINE Alu 3 312 0 7997 218 68 32 chr1 179023168 179023644 -103170020 - L1MA4 LINE L1 -2785 4780 4322 2574 33 7 3 chr1 179023644 179023949 -103169715 + AluY SINE Alu 1 306 -5 7997 218 68 32 chr1 179023949 179025162 -103168502 - L1MA4 LINE L1 -3243 4322 3154 2171 125 0 10 chr1 179025162 179025475 -103168189 - AluSg SINE Alu 0 310 1 7997 218 68 32 chr1 179025475 179026389 -103167275 - L1MA4 LINE L1 -4411 3154 1978 30 0 0 0 chr1 179026580 179026610 -103167054 + AT_rich Low_complexity Low_complexity 1 30 0 264 59 0 0 chr1 179027365 179027399 -103166265 + (TATG)n Simple_repeat Simple_repeat 1 34 0 405 0 0 0 chr1 179027399 179027444 -103166220 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 181 93 0 47 chr1 179027444 179027487 -103166177 + (CAT)n Simple_repeat Simple_repeat 3 43 0 273 275 69 107 chr1 179028067 179028300 -103165364 + MIR SINE MIR 21 244 -18 240 35 0 0 chr1 179028401 179028430 -103165234 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2075 114 4 0 chr1 179028431 179028711 -103164953 - AluSq SINE Alu -32 281 1 5265 117 4 4 chr1 179029018 179029320 -103164344 - L1PA15 LINE L1 -5 6160 5859 1130 259 32 24 chr1 179029320 179029911 -103163753 - L1MC3 LINE L1 -1927 5858 5263 228 195 0 0 chr1 179030128 179030169 -103163495 - L1MC/D LINE L1 -2019 5789 5749 1910 160 35 25 chr1 179030562 179030930 -103162734 + THE1C LTR MaLR 1 372 -3 9572 140 38 5 chr1 179030934 179032462 -103161202 + THE1C-int LTR MaLR 2 1580 0 261 116 0 0 chr1 179032462 179032505 -103161159 + THE1C LTR MaLR 1 43 -385 342 258 0 0 chr1 179033799 179033896 -103159768 + L1ME3A LINE L1 5786 5882 -288 1599 129 0 0 chr1 179035806 179036030 -103157634 + AluSg/x SINE Alu 87 310 0 195 333 26 13 chr1 179036472 179036550 -103157114 - L2 LINE L2 -611 2703 2625 359 291 45 0 chr1 179036580 179036690 -103156974 - L2 LINE L2 0 3313 3199 7514 36 0 0 chr1 179037416 179038665 -103154999 - L1PA4 LINE L1 -3 6152 4904 202 239 71 150 chr1 179039514 179039627 -103154037 - MIR3 SINE MIR -21 187 84 216 284 95 0 chr1 179040681 179040755 -103152909 - MIR3 SINE MIR -21 187 107 481 309 100 14 chr1 179040770 179040980 -103152684 - MIR SINE MIR -6 256 29 382 227 41 0 chr1 179041440 179041537 -103152127 + L1MEc LINE L1 1999 2099 -4297 1525 259 11 36 chr1 179041537 179042089 -103151575 + L1MEc LINE L1 2489 3026 -3189 5546 170 26 4 chr1 179042094 179044118 -103149546 + L1PA16 LINE L1 4089 6158 -8 1127 256 69 18 chr1 179044123 179044750 -103148914 + L1MEc LINE L1 2086 2700 -3515 359 239 42 63 chr1 179044749 179044891 -103148773 + L1MEc LINE L1 1676 1814 -4582 * 2071 246 84 0 chr1 179044886 179045550 -103148114 + L1MEc LINE L1 3715 4434 -1781 427 291 42 61 chr1 179046779 179046992 -103146672 + MIR SINE MIR 8 216 -46 413 244 188 30 chr1 179047101 179047171 -103146493 + L2 LINE L2 3085 3143 -170 357 43 0 0 chr1 179047171 179047218 -103146446 + (TATG)n Simple_repeat Simple_repeat 2 48 0 413 244 188 30 chr1 179047218 179047344 -103146320 + L2 LINE L2 3143 3312 -1 341 260 126 43 chr1 179048086 179048363 -103145301 + Charlie7 DNA MER1_type 54 353 -2259 35 24 0 0 chr1 179048363 179048405 -103145259 + AT_rich Low_complexity Low_complexity 1 42 0 1952 138 14 3 chr1 179048410 179048707 -103144957 - AluJb SINE Alu -12 300 1 1341 245 71 19 chr1 179048720 179049165 -103144499 + Charlie7 DNA MER1_type 1493 1913 -699 2103 137 3 0 chr1 179049165 179049472 -103144192 + AluSx SINE Alu 1 308 -4 1341 245 71 19 chr1 179049472 179049793 -103143871 + Charlie7 DNA MER1_type 1913 2334 -278 372 94 0 0 chr1 179049848 179049901 -103143763 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 1847 167 7 7 chr1 179049916 179050221 -103143443 - AluJb SINE Alu -7 305 1 334 174 28 111 chr1 179050229 179050373 -103143291 + Charlie7 DNA MER1_type 2458 2589 -23 273 57 0 0 chr1 179052057 179052092 -103141572 + (TC)n Simple_repeat Simple_repeat 2 36 0 808 213 51 47 chr1 179057536 179057771 -103135893 - MER106A DNA MER1_type 0 236 1 285 424 38 0 chr1 179058011 179058143 -103135521 + L2 LINE L2 3134 3270 -2 35 0 0 0 chr1 179058263 179058298 -103135366 + AT_rich Low_complexity Low_complexity 1 35 0 277 268 113 0 chr1 179058802 179058873 -103134791 + L2 LINE L2 3162 3240 -32 762 179 5 33 chr1 179058874 179058974 -103134690 - MER53 DNA DNA 0 189 95 2020 144 22 35 chr1 179058974 179059343 -103134321 - THE1B LTR MaLR 0 364 1 762 179 5 33 chr1 179059343 179059426 -103134238 - MER53 DNA DNA -94 95 11 2113 105 3 3 chr1 179059654 179059939 -103133725 - AluSc SINE Alu -24 285 1 562 213 37 29 chr1 179060949 179061085 -103132579 - AluJo SINE Alu -173 139 3 987 138 39 0 chr1 179061336 179061517 -103132147 - L1PA11 LINE L1 -2149 3997 3810 7686 144 3 9 chr1 179061518 179063668 -103129996 + L1PA11 LINE L1 4010 6173 -1 353 236 48 18 chr1 179063669 179063798 -103129866 - MER41C LTR ERV1 -113 444 282 25 0 0 0 chr1 179067635 179067660 -103126004 + AT_rich Low_complexity Low_complexity 1 25 0 336 323 93 53 chr1 179068275 179068383 -103125281 + L2 LINE L2 2255 2357 -957 2230 109 7 0 chr1 179068383 179068685 -103124979 - AluSg SINE Alu -6 304 1 336 323 93 53 chr1 179068685 179068802 -103124862 + L2 LINE L2 2357 2489 -825 1355 254 115 53 chr1 179068901 179070100 -103123564 - L1ME3A LINE L1 0 6239 4971 22 0 0 0 chr1 179070122 179070144 -103123520 + AT_rich Low_complexity Low_complexity 1 22 0 6273 122 34 1 chr1 179070144 179071301 -103122363 - L1MA2 LINE L1 0 7723 6531 2510 158 0 2 chr1 179071302 179071746 -103121918 - L1MA2 LINE L1 -5163 2402 1960 9393 173 59 8 chr1 179071747 179073552 -103120112 - L1MA2 LINE L1 -5658 1907 12 388 268 65 88 chr1 179073700 179074305 -103119359 - L1ME3A LINE L1 -1444 4771 4181 386 295 70 19 chr1 179074429 179074585 -103119079 + ERVL LTR ERVL 4739 4902 -862 50 51 0 0 chr1 179074736 179074814 -103118850 + AT_rich Low_complexity Low_complexity 1 78 0 258 208 26 0 chr1 179074836 179074913 -103118751 - L1P LINE L1 -2874 3272 3194 634 294 51 39 chr1 179074913 179075324 -103118340 - L1ME3A LINE L1 -2953 3262 2847 384 265 175 47 chr1 179075356 179075613 -103118051 - L1ME3A LINE L1 -3433 2782 2493 32 0 0 0 chr1 179076798 179076830 -103116834 + AT_rich Low_complexity Low_complexity 1 32 0 1896 166 73 15 chr1 179077078 179077476 -103116188 - MSTA LTR MaLR -5 423 3 8914 157 55 8 chr1 179077478 179079054 -103114610 - MSTA-int LTR MaLR 0 1651 1 2573 133 44 5 chr1 179079054 179079466 -103114198 - MSTA LTR MaLR 0 428 1 2183 128 3 0 chr1 179080064 179080360 -103113304 + AluSx SINE Alu 6 302 -10 23 0 0 0 chr1 179081445 179081468 -103112196 + AT_rich Low_complexity Low_complexity 1 23 0 255 103 0 0 chr1 179081560 179081599 -103112065 + (TG)n Simple_repeat Simple_repeat 2 40 0 405 277 36 12 chr1 179081628 179081798 -103111866 - HAL1b LINE L1 -859 489 384 398 289 103 55 chr1 179081927 179082239 -103111425 - L1MEd LINE L1 -4908 1297 1010 240 35 0 0 chr1 179082811 179082840 -103110824 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1796 65 0 9 chr1 179082861 179083090 -103110574 - AluY SINE Alu -84 227 1 4161 176 19 18 chr1 179083674 179085002 -103108662 + L1PB3 LINE L1 4287 5606 -548 5522 34 5 1 chr1 179085007 179085679 -103107985 + L1PA4 LINE L1 5481 6154 -1 3491 124 13 4 chr1 179085679 179086233 -103107431 + L1PB3 LINE L1 5593 6154 0 357 244 98 55 chr1 179087468 179087632 -103106032 + L1ME4a LINE L1 5923 6093 -28 1489 203 0 47 chr1 179088120 179088474 -103105190 + AluJb SINE Alu 1 340 0 13616 132 23 4 chr1 179088683 179090928 -103102736 + Tigger1 DNA MER2_type 26 2313 -105 1698 184 18 4 chr1 179091053 179091418 -103102246 - L1PA16 LINE L1 0 6155 5772 6015 154 20 16 chr1 179091418 179092062 -103101602 - L1PA13 LINE L1 -2 7599 6959 2048 131 0 16 chr1 179092062 179092374 -103101290 - AluSg SINE Alu -3 307 1 6015 154 20 16 chr1 179092374 179093678 -103099986 - L1PA7 LINE L1 -642 6959 5631 5291 50 3 0 chr1 179093678 179094332 -103099332 + L1PA7 LINE L1 6934 7589 -3 2683 233 10 38 chr1 179094332 179094984 -103098680 - L1PA13 LINE L1 -4427 3157 2520 2569 118 3 3 chr1 179094984 179095348 -103098316 - THE1B LTR MaLR 0 364 1 2683 233 10 38 chr1 179095348 179095565 -103098099 - L1PA13 LINE L1 -5064 2520 2298 373 276 0 0 chr1 179095894 179095992 -103097672 - L1PA13 LINE L1 -5399 2182 2085 851 352 28 23 chr1 179096284 179096721 -103096943 - L1PA13 LINE L1 -6348 1226 788 410 248 168 7 chr1 179096740 179096889 -103096775 + MIR SINE MIR 88 260 -2 2606 215 58 47 chr1 179097207 179098053 -103095611 - L1MD2 LINE L1 -9 6350 5496 285 203 0 0 chr1 179098060 179098119 -103095545 - Charlie2a DNA MER1_type -737 2125 2067 251 161 36 18 chr1 179098172 179098228 -103095436 - Charlie2a DNA MER1_type -1073 1789 1733 1834 216 36 39 chr1 179098487 179099308 -103094356 - L1MD2 LINE L1 -743 5403 4674 1647 178 14 14 chr1 179099505 179099798 -103093866 + AluJo SINE Alu 13 305 -7 229 238 95 0 chr1 179100313 179100397 -103093267 + Charlie2a DNA MER1_type 1733 1824 -1038 604 178 23 166 chr1 179100433 179100831 -103092833 + Charlie2a DNA MER1_type 2067 2407 -455 21 0 0 0 chr1 179100940 179100961 -103092703 + AT_rich Low_complexity Low_complexity 1 21 0 1497 127 54 0 chr1 179100988 179101248 -103092416 + L1MA1 LINE L1 6015 6288 -14 316 77 0 0 chr1 179101248 179101300 -103092364 + L1MA3 LINE L1 6254 6305 0 1004 125 0 138 chr1 179101312 179101393 -103092271 + L1PA15 LINE L1 5959 6050 -115 2327 86 10 0 chr1 179101393 179101696 -103091968 + AluY SINE Alu 5 310 -1 1004 125 0 138 chr1 179101696 179101854 -103091810 + L1PA15 LINE L1 6049 6165 0 262 212 62 18 chr1 179101894 179102007 -103091657 + Charlie2a DNA MER1_type 2633 2750 -112 746 144 17 0 chr1 179102009 179102127 -103091537 - Tigger1 DNA MER2_type -3 2415 2296 1759 222 2 7 chr1 179102131 179102572 -103091092 + L1P LINE L1 3362 3800 -2346 181 237 26 0 chr1 179102687 179102725 -103090939 + L2 LINE L2 3218 3256 -16 1706 135 29 43 chr1 179104308 179104589 -103089075 + AluSx SINE Alu 1 277 -35 405 102 0 0 chr1 179104593 179104652 -103089012 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 35 0 0 chr1 179105567 179105596 -103088068 + AT_rich Low_complexity Low_complexity 1 29 0 363 296 75 27 chr1 179105984 179106222 -103087442 - L1M4 LINE L1 -1209 4937 4692 317 316 19 13 chr1 179106856 179107014 -103086650 + HAL1b LINE L1 471 629 -719 1057 138 74 0 chr1 179107399 179107588 -103086076 - MER67C LTR ERV1 -440 270 68 2284 104 48 25 chr1 179108332 179108688 -103084976 + THE1B LTR MaLR 1 364 0 392 290 145 14 chr1 179108844 179109134 -103084530 + L1MC4a LINE L1 4382 4709 -1437 240 196 0 0 chr1 179109196 179109242 -103084422 + (CA)n Simple_repeat Simple_repeat 1 46 0 2363 266 52 32 chr1 179109314 179110085 -103083579 - MER21B LTR ERV1 -61 802 17 546 342 44 25 chr1 179110155 179110245 -103083419 + L1MC4a LINE L1 4903 4990 -1156 4015 99 2 0 chr1 179110245 179110798 -103082866 + MER41A LTR ERV1 1 554 0 546 342 44 25 chr1 179110798 179110855 -103082809 + L1MC4a LINE L1 4990 5044 -1102 2022 168 0 0 chr1 179110855 179111165 -103082499 + AluJb SINE Alu 1 310 -2 546 342 44 25 chr1 179111165 179111449 -103082215 + L1MC4a LINE L1 5044 5343 -803 502 314 91 25 chr1 179111452 179111980 -103081684 + L1MC4a LINE L1 5397 5959 -1849 1482 234 14 0 chr1 179112572 179112867 -103080797 + AluJo SINE Alu 1 299 -13 642 145 26 0 chr1 179113000 179113117 -103080547 + L1MA8 LINE L1 6167 6286 -5 246 282 26 34 chr1 179113210 179113327 -103080337 + MLT1H LTR MaLR 42 157 -392 1161 236 24 91 chr1 179113398 179113561 -103080103 + MLT1B LTR MaLR 3 175 -215 780 65 19 0 chr1 179113561 179113669 -103079995 + L1PA7 LINE L1 6045 6154 0 1161 236 24 91 chr1 179113669 179113852 -103079812 + MLT1B LTR MaLR 175 319 -71 2261 95 0 0 chr1 179113852 179114147 -103079517 + AluY SINE Alu 1 295 -16 1161 236 24 91 chr1 179114147 179114215 -103079449 + MLT1B LTR MaLR 319 390 0 5511 160 37 21 chr1 179114556 179115147 -103078517 + L1PA15 LINE L1 4398 4978 -1187 2575 104 30 0 chr1 179115147 179115511 -103078153 + THE1C LTR MaLR 1 375 0 5511 160 37 21 chr1 179115511 179116508 -103077156 + L1PA15 LINE L1 4978 5957 -208 1808 146 3 31 chr1 179116508 179116796 -103076868 + AluSx SINE Alu 1 280 -32 1125 90 11 6 chr1 179116798 179116976 -103076688 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 213 39 0 0 chr1 179116976 179117002 -103076662 + (GGAA)n Simple_repeat Simple_repeat 1 26 0 5511 160 37 21 chr1 179117002 179117140 -103076524 + L1PA15 LINE L1 5956 6164 -1 1756 171 25 0 chr1 179117505 179117780 -103075884 + AluJb SINE Alu 1 282 -30 1750 249 5 12 chr1 179118201 179118611 -103075053 + L1M2 LINE L1 875 1281 -5568 2693 190 49 40 chr1 179118633 179118893 -103074771 + L1M2 LINE L1 2114 2370 -4478 216 0 0 0 chr1 179118893 179118917 -103074747 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2693 190 49 40 chr1 179118917 179119416 -103074248 + L1M2 LINE L1 2370 2882 -3966 2093 128 0 10 chr1 179119416 179119721 -103073943 + AluSq SINE Alu 5 306 -7 2693 190 49 40 chr1 179119721 179119916 -103073748 + L1M2 LINE L1 2882 3074 -3774 2220 121 0 0 chr1 179119920 179120227 -103073437 + AluY SINE Alu 1 307 -4 1253 89 0 39 chr1 179120227 179120426 -103073238 + AluSc SINE Alu 133 309 0 5338 205 36 5 chr1 179120426 179121726 -103071938 + L1M2 LINE L1 3114 4453 -2395 918 291 56 24 chr1 179121873 179122247 -103071417 + MLT1G LTR MaLR 1 386 -204 2510 65 0 0 chr1 179122361 179122655 -103071009 + AluY SINE Alu 1 294 -17 2481 62 0 0 chr1 179125591 179125898 -103067766 - AluY SINE Alu -4 307 1 1558 213 25 14 chr1 179127005 179127366 -103066298 - MLT1A1 LTR MaLR 0 365 1 185 271 0 21 chr1 179127631 179127679 -103065985 + L2 LINE L2 2275 2321 -993 24 0 0 0 chr1 179128198 179128222 -103065442 + AT_rich Low_complexity Low_complexity 1 24 0 295 307 34 0 chr1 179128794 179128882 -103064782 + MIR SINE MIR 36 126 -136 298 191 355 40 chr1 179128882 179129034 -103064630 + LTR36 LTR ERV1 1 200 -411 1412 170 58 18 chr1 179129060 179129389 -103064275 + LTR36 LTR ERV1 270 611 0 297 317 50 8 chr1 179130487 179130607 -103063057 - MIR SINE MIR -136 126 2 894 213 76 14 chr1 179131279 179131490 -103062174 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr1 179132014 179132035 -103061629 + AT_rich Low_complexity Low_complexity 1 21 0 1970 118 4 0 chr1 179132473 179132736 -103060928 - AluSx SINE Alu -44 268 5 636 272 37 63 chr1 179133469 179133623 -103060041 - MIR SINE MIR -1 261 115 1708 203 22 22 chr1 179133623 179133988 -103059676 - MLT1A1 LTR MaLR 0 365 1 636 272 37 63 chr1 179133988 179134101 -103059563 - MIR SINE MIR -147 115 1 423 331 98 23 chr1 179134631 179134836 -103058828 + L1ME4a LINE L1 5678 5866 -255 2530 80 0 0 chr1 179134836 179135147 -103058517 + AluY SINE Alu 1 311 0 423 331 98 23 chr1 179135147 179135337 -103058327 + L1ME4a LINE L1 5866 6103 -18 330 306 41 27 chr1 179137791 179137938 -103055726 - L2 LINE L2 0 3313 3165 283 361 88 19 chr1 179138803 179139019 -103054645 - L2 LINE L2 -644 2670 2440 652 305 64 80 chr1 179139939 179140185 -103053479 + L1MEd LINE L1 12 260 -5859 2143 109 3 0 chr1 179140185 179140478 -103053186 - AluSx SINE Alu -18 294 1 652 305 64 80 chr1 179140478 179140883 -103052781 + L1MEd LINE L1 260 653 -5466 252 289 86 53 chr1 179140882 179141034 -103052630 + L1M3c LINE L1 1357 1513 -5983 * 685 329 47 26 chr1 179141416 179141842 -103051822 + L1M3c LINE L1 1988 2422 -5144 921 157 0 0 chr1 179141850 179141990 -103051674 + AluSg/x SINE Alu 156 295 -17 221 0 35 0 chr1 179141993 179142022 -103051642 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 10399 193 73 55 chr1 179142027 179142758 -103050906 + L1MA7 LINE L1 2178 2895 -4815 2069 161 3 0 chr1 179142758 179143068 -103050596 + AluSq SINE Alu 1 311 -2 10399 193 73 55 chr1 179143068 179146028 -103047636 + L1MA7 LINE L1 2895 5952 -1758 192 77 0 0 chr1 179146028 179146054 -103047610 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 10399 193 73 55 chr1 179146054 179147833 -103045831 + L1MA7 LINE L1 5952 7699 -11 330 169 0 0 chr1 179147975 179148034 -103045630 + AluJo SINE Alu 49 107 -195 1308 159 10 14 chr1 179148035 179148243 -103045421 + AluJo SINE Alu 82 288 -24 556 331 62 4 chr1 179148432 179148674 -103044990 - MIR SINE MIR 0 262 7 638 274 70 23 chr1 179148684 179149212 -103044452 + L1MEd LINE L1 925 1332 -4797 413 345 47 0 chr1 179149539 179149710 -103043954 - L2 LINE L2 -292 3021 2843 682 242 11 11 chr1 179150201 179150383 -103043281 + L1ME2 LINE L1 5974 6155 -9 1205 119 0 0 chr1 179150457 179150634 -103043030 + THE1C LTR MaLR 199 375 0 238 344 70 23 chr1 179150649 179150777 -103042887 + L1MC/D LINE L1 5523 5656 -2152 562 61 12 0 chr1 179150905 179150987 -103042677 + L1MB4 LINE L1 6098 6180 0 1310 191 8 13 chr1 179151305 179151541 -103042123 + AluJb SINE Alu 60 294 -18 209 338 56 0 chr1 179154642 179154713 -103038951 + L2 LINE L2 3239 3313 0 1922 128 7 4 chr1 179155166 179155471 -103038193 - AluSx SINE Alu 0 306 1 2289 18 0 0 chr1 179155496 179155780 -103037884 - L1P LINE L1 -1579 4567 4284 1601 26 0 5 chr1 179155780 179155973 -103037691 + L1PA4 LINE L1 5960 6152 -3 378 290 99 8 chr1 179156392 179156523 -103037141 - MIR3 SINE MIR -32 176 34 237 328 109 28 chr1 179156711 179156958 -103036706 - L2 LINE L2 -121 3192 2926 2270 105 0 0 chr1 179157067 179157361 -103036303 - AluSc SINE Alu -15 294 1 534 336 49 24 chr1 179159119 179159366 -103034298 + MIR SINE MIR 1 253 -9 1889 170 6 3 chr1 179161019 179161330 -103032334 - AluJb SINE Alu 0 312 1 2017 134 3 3 chr1 179161785 179162077 -103031587 + AluSx SINE Alu 1 292 -20 195 211 28 14 chr1 179163412 179163483 -103030181 + CT-rich Low_complexity Low_complexity 1 72 0 761 269 94 14 chr1 179163937 179164160 -103029504 + MIR SINE MIR 22 262 0 1344 302 99 49 chr1 179164289 179165434 -103028230 - L2 LINE L2 0 3313 2105 543 213 0 0 chr1 179165445 179165539 -103028125 + AluJ/FLAM SINE Alu 1 94 -218 30 0 0 0 chr1 179165543 179165573 -103028091 + AT_rich Low_complexity Low_complexity 1 30 0 251 27 0 27 chr1 179165584 179165621 -103028043 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1923 116 7 44 chr1 179165637 179165931 -103027733 - AluSq SINE Alu -30 283 1 880 220 0 0 chr1 179165944 179166103 -103027561 + FRAM SINE Alu 1 154 -22 913 270 52 4 chr1 179166114 179166366 -103027298 - L2 LINE L2 -1227 2087 1824 518 218 76 76 chr1 179166366 179166456 -103027208 + L1ME1 LINE L1 5937 6026 -140 2242 128 0 0 chr1 179166456 179166768 -103026896 - AluSx SINE Alu 0 312 1 518 218 76 76 chr1 179166768 179166902 -103026762 + L1ME1 LINE L1 6025 6161 -5 1738 146 51 20 chr1 179166955 179167249 -103026415 - AluJo SINE Alu -7 305 3 16274 213 36 28 chr1 179167338 179172956 -103020708 + L1MA6 LINE L1 5 5353 -1968 369 0 0 0 chr1 179172956 179172997 -103020667 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 16274 213 36 28 chr1 179172997 179174739 -103018925 + L1MA6 LINE L1 5353 7079 -242 965 148 13 124 chr1 179174714 179175012 -103018652 + L1MB8 LINE L1 6929 7193 -6 * 1516 322 150 13 chr1 179175030 179175942 -103017722 - L2 LINE L2 -1635 1679 643 3245 156 9 34 chr1 179177556 179178140 -103015524 - L1MA6 LINE L1 -6 6294 5726 2322 19 0 4 chr1 179178378 179178641 -103015023 + AluY SINE Alu 50 311 0 367 244 31 44 chr1 179178758 179178776 -103014888 - L1MA10 LINE L1 -1 6333 6316 1165 229 103 15 chr1 179178776 179179456 -103014208 - L1ME2 LINE L1 -9 6155 5292 236 180 0 0 chr1 179179475 179179525 -103014139 - L1ME2 LINE L1 -974 5172 5123 1189 165 0 30 chr1 179179538 179179738 -103013926 - AluJb SINE Alu -7 305 112 5509 157 15 8 chr1 179179738 179180628 -103013036 - ERVL-B1 LTR ERVL -1319 4445 3550 11734 198 19 4 chr1 179180631 179182760 -103010904 - ERVL-B1 LTR ERVL -2866 2898 738 2645 234 49 15 chr1 179182780 179183395 -103010269 - ERVL-B1 LTR ERVL -5127 637 2 2101 217 72 36 chr1 179183396 179183435 -103010229 - MLT2B1 LTR ERVL 0 520 484 429 20 0 0 chr1 179183435 179183485 -103010179 + (TG)n Simple_repeat Simple_repeat 2 51 0 2101 217 72 36 chr1 179183485 179183947 -103009717 - MLT2B1 LTR ERVL -36 484 1 484 189 182 8 chr1 179184417 179184549 -103009115 + L2 LINE L2 1907 2061 -1253 844 319 18 7 chr1 179184676 179184949 -103008715 + LTR16C LTR ERVL 186 461 -30 839 239 99 35 chr1 179184971 179185255 -103008409 + L2 LINE L2 2113 2414 -900 530 359 9 5 chr1 179185256 179185473 -103008191 - L2 LINE L2 -400 2914 2697 24 77 0 0 chr1 179185848 179185900 -103007764 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr1 179186222 179186245 -103007419 + AT_rich Low_complexity Low_complexity 1 23 0 201 286 0 16 chr1 179186649 179186712 -103006952 + CT-rich Low_complexity Low_complexity 4 65 0 318 260 62 70 chr1 179188358 179188560 -103005104 - MIR SINE MIR -59 203 4 1703 168 0 31 chr1 179189761 179190082 -103003582 - AluJb SINE Alu -1 311 1 210 200 22 0 chr1 179191512 179191557 -103002107 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 280 159 48 32 chr1 179192647 179192710 -103000954 - MIR3 SINE MIR -20 188 125 1390 181 147 11 chr1 179193146 179193412 -103000252 + AluSx SINE Alu 1 302 0 2511 72 0 3 chr1 179193943 179194247 -102999417 - AluY SINE Alu -8 303 1 285 259 0 0 chr1 179194714 179194795 -102998869 + A-rich Low_complexity Low_complexity 1 81 0 259 279 318 8 chr1 179195068 179195197 -102998467 + MER91A DNA MER1_type 28 196 0 1336 217 33 0 chr1 179196052 179196324 -102997340 - MER58B DNA MER1_type -4 337 57 424 299 50 40 chr1 179197163 179197364 -102996300 - MIR SINE MIR -31 231 29 968 207 0 0 chr1 179199076 179199240 -102994424 + FRAM SINE Alu 1 164 -2 182 333 183 21 chr1 179199248 179199434 -102994230 - L2 LINE L2 -225 3088 2873 213 333 0 0 chr1 179201297 179201360 -102992304 + L3 LINE CR1 1140 1202 -375 301 147 0 93 chr1 179201458 179201533 -102992131 + Tigger2 DNA MER2_type 18 85 -2633 23 0 0 0 chr1 179201576 179201599 -102992065 + AT_rich Low_complexity Low_complexity 1 23 0 345 314 0 10 chr1 179202179 179202281 -102991383 + MIR SINE MIR 2 102 -160 315 0 0 0 chr1 179202322 179202357 -102991307 + (T)n Simple_repeat Simple_repeat 1 35 0 226 255 0 0 chr1 179203269 179203316 -102990348 - L2 LINE L2 -13 3300 3254 2100 128 0 3 chr1 179203438 179203744 -102989920 + AluSc SINE Alu 5 309 0 35 0 0 22 chr1 179203852 179203865 -102989799 + AT_rich Low_complexity Low_complexity 1 13 -32 7293 35 0 0 chr1 179203865 179204675 -102988989 + L1PA5 LINE L1 5339 6148 -6 35 0 0 22 chr1 179204675 179204707 -102988957 + AT_rich Low_complexity Low_complexity 13 45 0 21 71 0 0 chr1 179204872 179204914 -102988750 + AT_rich Low_complexity Low_complexity 1 42 0 183 42 0 0 chr1 179205119 179205143 -102988521 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1186 159 0 48 chr1 179205145 179205353 -102988311 - AluJb SINE Alu -32 280 83 354 171 0 0 chr1 179205903 179205973 -102987691 + CT-rich Low_complexity Low_complexity 2 71 0 22 70 0 0 chr1 179206558 179206601 -102987063 + AT_rich Low_complexity Low_complexity 1 43 0 317 333 45 18 chr1 179208446 179208557 -102985107 - L2 LINE L2 -33 3239 3126 215 286 143 19 chr1 179209171 179209276 -102984388 - MIR3 SINE MIR 0 208 91 365 105 18 18 chr1 179209529 179209586 -102984078 - MLT1C LTR MaLR 0 467 411 825 219 0 24 chr1 179209587 179209751 -102983913 + FRAM SINE Alu 1 151 -25 410 79 0 63 chr1 179209777 179209840 -102983824 - MLT1C LTR MaLR -52 415 357 230 135 0 0 chr1 179209840 179209877 -102983787 - L1 LINE L1 -1545 4601 4565 1151 38 0 0 chr1 179209924 179210055 -102983609 - L1PA4 LINE L1 -4 6151 6021 2431 201 24 8 chr1 179210055 179210585 -102983079 + L1PA15 LINE L1 4634 5173 -968 5952 125 8 23 chr1 179210585 179211784 -102981880 + L1PA15 LINE L1 4979 6164 -1 1121 265 88 6 chr1 179211791 179212119 -102981545 - MLT1C LTR MaLR -98 369 15 195 308 31 31 chr1 179212641 179212706 -102980958 - L3 LINE CR1 -10 1567 1503 419 292 33 0 chr1 179212907 179213027 -102980637 - MIR3 SINE MIR -48 160 37 268 224 0 0 chr1 179213311 179213360 -102980304 + MIR SINE MIR 81 129 -133 3096 260 67 21 chr1 179213610 179214463 -102979201 + L1ME2 LINE L1 3951 4763 -1401 1911 146 0 23 chr1 179214463 179214792 -102978872 - AluJb SINE Alu 0 312 5 3096 260 67 21 chr1 179214792 179214921 -102978743 + L1ME2 LINE L1 4763 4885 -1279 186 43 0 0 chr1 179214921 179214944 -102978720 + (TAA)n Simple_repeat Simple_repeat 3 25 0 3096 260 67 21 chr1 179214944 179216001 -102977663 + L1ME2 LINE L1 4885 6096 -68 511 252 0 24 chr1 179216048 179216171 -102977493 - L2 LINE L2 -4 3309 3190 739 277 47 15 chr1 179216189 179216463 -102977201 + L1MC4a LINE L1 5695 5977 -1831 21 57 0 0 chr1 179216592 179216627 -102977037 + AT_rich Low_complexity Low_complexity 1 35 0 5193 57 7 0 chr1 179216650 179217262 -102976402 - L1PA5 LINE L1 -2 6152 5537 1221 76 67 85 chr1 179217845 179217949 -102975715 + L1MB3 LINE L1 5963 6067 -116 2033 117 7 39 chr1 179217949 179218258 -102975406 + AluSx SINE Alu 1 299 -13 1221 76 67 85 chr1 179218258 179218376 -102975288 + L1MB3 LINE L1 6067 6181 -2 332 261 21 92 chr1 179218609 179218751 -102974913 + MER91C DNA MER1_type 9 140 0 181 310 0 0 chr1 179219048 179219106 -102974558 - L2 LINE L2 -1 3271 3214 337 301 64 6 chr1 179219494 179219667 -102973997 + L1M4 LINE L1 2581 2763 -3383 684 99 10 30 chr1 179219697 179219798 -102973866 - AluSq SINE Alu -92 221 123 2163 81 0 27 chr1 179219803 179219961 -102973703 - AluSx SINE Alu -24 288 127 266 0 29 0 chr1 179219961 179219995 -102973669 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2258 70 0 3 chr1 179219995 179220279 -102973385 - AluY SINE Alu -28 283 1 2163 81 0 27 chr1 179220279 179220415 -102973249 - AluSx SINE Alu -183 129 1 1074 224 124 17 chr1 179220416 179220890 -102972774 + L1M4 LINE L1 2872 3396 -2750 21 0 0 0 chr1 179221672 179221693 -102971971 + AT_rich Low_complexity Low_complexity 1 21 0 361 81 32 0 chr1 179221835 179221897 -102971767 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 1252 248 156 31 chr1 179221938 179222418 -102971246 + MLT1H LTR MaLR 8 547 -2 240 283 0 0 chr1 179222652 179222712 -102970952 + L2 LINE L2 3254 3313 0 778 312 59 29 chr1 179223519 179224148 -102969516 + L1M4 LINE L1 3784 4431 -1715 4227 147 74 36 chr1 179224150 179224318 -102969346 - MER4D LTR ERV1 0 872 712 3610 142 29 8 chr1 179224318 179224834 -102968830 - MER1A DNA MER1_type 0 527 1 4227 147 74 36 chr1 179224834 179225514 -102968150 - MER4D LTR ERV1 -160 712 1 718 290 72 19 chr1 179225624 179225986 -102967678 + L1MC4 LINE L1 7088 7468 -574 229 284 149 14 chr1 179226480 179226621 -102967043 - L3 LINE CR1 -169 1408 1249 2227 130 0 0 chr1 179228169 179228476 -102965188 - AluSg SINE Alu -3 307 1 275 202 0 2 chr1 179228985 179229043 -102964621 + L1ME1 LINE L1 6112 6162 -4 3868 163 53 69 chr1 179229509 179230509 -102963155 + L1MB8 LINE L1 5188 6172 -6 689 298 40 9 chr1 179230537 179230762 -102962902 + MIR SINE MIR 21 252 -10 1643 151 0 75 chr1 179231883 179232188 -102961476 - AluJb SINE Alu -20 292 11 302 294 145 8 chr1 179232382 179232552 -102961112 - MIR SINE MIR -62 146 5 535 263 81 6 chr1 179233197 179233357 -102960307 - MIR SINE MIR -89 173 2 2583 49 0 3 chr1 179233576 179233881 -102959783 - AluY SINE Alu -7 304 1 275 231 108 0 chr1 179233902 179233967 -102959697 - MIR SINE MIR -73 189 118 4924 133 69 2 chr1 179234250 179235309 -102958355 + L1MA8 LINE L1 4912 6065 -226 655 196 54 59 chr1 179235409 179235613 -102958051 + L1MA8 LINE L1 6088 6290 -1 679 231 143 6 chr1 179235786 179235968 -102957696 - MER63A DNA MER1_type 0 210 4 1410 201 80 37 chr1 179236736 179237110 -102956554 + MLT1B LTR MaLR 1 390 0 985 187 0 0 chr1 179237756 179237922 -102955742 - FRAM SINE Alu -12 164 1 225 65 0 0 chr1 179238007 179238038 -102955626 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 255 271 60 38 chr1 179238085 179238218 -102955446 + L1M4 LINE L1 3753 3888 -2258 316 161 65 0 chr1 179238247 179238309 -102955355 - MIR SINE MIR -36 226 161 1175 200 14 0 chr1 179238346 179238561 -102955103 - MER58A DNA MER1_type -1 223 6 360 273 136 25 chr1 179239478 179239720 -102953944 + MLT1K LTR MaLR 162 430 -158 264 335 62 36 chr1 179240271 179240578 -102953086 - L2 LINE L2 -437 2877 2563 4560 219 21 43 chr1 179241726 179243116 -102950548 - L1M4c LINE L1 -4372 2274 816 453 328 37 41 chr1 179243247 179243518 -102950146 - HAL1 LINE L1 -1125 1382 1113 1538 253 85 59 chr1 179243532 179244516 -102949148 + L1M3e LINE L1 793 1802 -5228 318 231 154 8 chr1 179244517 179244634 -102949030 + L1M3e LINE L1 1693 1826 -5204 1280 191 10 20 chr1 179244634 179244937 -102948727 + L1M3e LINE L1 2173 2472 -4565 1032 146 0 0 chr1 179245057 179245215 -102948449 + L1PBa LINE L1 1 158 -6705 3274 114 41 0 chr1 179245233 179246203 -102947461 + L1PBa LINE L1 634 1824 -5039 464 252 97 31 chr1 179246983 179247209 -102946455 - L1MC4a LINE L1 -1853 5955 5715 1766 194 0 0 chr1 179247404 179247692 -102945972 + AluSx SINE Alu 4 291 -21 327 179 162 34 chr1 179247740 179247857 -102945807 - L1MB4 LINE L1 0 6180 6049 464 252 97 31 chr1 179248341 179248567 -102945097 - L1MC4a LINE L1 -1853 5955 5715 1793 191 0 0 chr1 179248762 179249050 -102944614 + AluSx SINE Alu 4 291 -21 531 114 181 0 chr1 179249098 179249203 -102944461 - L1MB4 LINE L1 0 6180 6057 236 340 28 0 chr1 179249220 179249326 -102944338 - L1P LINE L1 -1132 5014 4906 595 297 68 19 chr1 179249326 179249737 -102943927 - L1MC4a LINE L1 -1325 4821 4391 372 300 55 74 chr1 179249751 179249918 -102943746 - L1MC4a LINE L1 -1800 4346 4184 2249 90 0 0 chr1 179249918 179250197 -102943467 - AluSq SINE Alu -34 279 1 372 300 55 74 chr1 179250197 179250286 -102943378 - L1MC4a LINE L1 -1962 4184 4095 460 287 85 38 chr1 179250290 179250583 -102943081 - L1MC4a LINE L1 -2572 3574 3268 483 87 0 0 chr1 179250895 179250964 -102942700 + (TC)n Simple_repeat Simple_repeat 2 70 0 308 250 112 35 chr1 179252340 179252456 -102941208 + MIR SINE MIR 21 145 -117 487 299 85 47 chr1 179252823 179253224 -102940440 - L1ME LINE L1 -386 5735 5320 376 245 73 123 chr1 179253538 179253742 -102939922 - MIR SINE MIR -32 230 37 446 204 192 29 chr1 179254669 179254841 -102938823 + Charlie7 DNA MER1_type 39 238 -2374 841 251 94 27 chr1 179254925 179255255 -102938409 + Charlie7 DNA MER1_type 372 723 -1889 480 337 35 0 chr1 179255803 179255975 -102937689 + MER45A DNA AcHobo 1 178 0 183 294 54 54 chr1 179256059 179256151 -102937513 + L2 LINE L2 3177 3268 -4 228 360 122 19 chr1 179256324 179256693 -102936971 + L2 LINE L2 2825 3231 -41 182 91 30 0 chr1 179256951 179256984 -102936680 + GA-rich Low_complexity Low_complexity 1 34 0 243 88 0 0 chr1 179258168 179258202 -102935462 + (TG)n Simple_repeat Simple_repeat 2 35 0 312 171 0 0 chr1 179259638 179259720 -102933944 + A-rich Low_complexity Low_complexity 1 82 0 182 356 0 0 chr1 179259744 179259817 -102933847 - MIR SINE MIR -36 226 154 405 81 32 0 chr1 179259849 179259911 -102933753 + L1MC2 LINE L1 6270 6333 -11 386 217 135 86 chr1 179260116 179260290 -102933374 + MLT1A1 LTR MaLR 1 196 -169 240 67 0 0 chr1 179260624 179260654 -102933010 + MLT1A1 LTR MaLR 178 207 -167 253 67 0 0 chr1 179260685 179260715 -102932949 + MLT1A1 LTR MaLR 167 196 -169 624 184 40 148 chr1 179260836 179261059 -102932605 + MLT1A1 LTR MaLR 167 365 0 201 331 134 7 chr1 179261395 179261537 -102932127 - MIR SINE MIR -54 208 49 788 161 30 117 chr1 179261680 179261910 -102931754 - L1M4 LINE L1 -616 5562 5353 771 263 78 16 chr1 179261920 179262240 -102931424 + L2 LINE L2 1827 2166 -1148 1056 255 88 21 chr1 179262250 179262579 -102931085 + MLT1E2 LTR MaLR 32 382 -244 935 294 160 14 chr1 179262688 179263369 -102930295 + L2 LINE L2 2373 3141 -172 4000 108 11 0 chr1 179263437 179264132 -102929532 + L1P4 LINE L1 5123 5822 -346 11585 140 20 56 chr1 179264145 179267007 -102926657 + L1P3 LINE L1 6 2874 -3587 431 216 26 43 chr1 179267318 179267434 -102926230 + MLT1J2 LTR MaLR 21 134 -316 1781 157 13 30 chr1 179267892 179268197 -102925467 + AluJo SINE Alu 1 300 -12 374 290 129 32 chr1 179268363 179268580 -102925084 - MLT1J LTR MaLR -117 394 157 368 297 67 26 chr1 179268733 179268912 -102924752 - L1M4 LINE L1 -471 5650 5487 1298 179 14 61 chr1 179268912 179269191 -102924473 - LTR8A LTR ERV1 -428 299 34 2525 77 0 6 chr1 179269296 179269608 -102924056 - AluY SINE Alu -1 310 1 540 193 50 25 chr1 179270663 179270782 -102922882 + Zaphod DNA AcHobo 3910 4031 0 298 339 48 30 chr1 179270808 179270976 -102922688 - ERVL LTR ERVL -2735 2288 2118 2673 121 44 5 chr1 179270997 179271409 -102922255 - MSTA LTR MaLR 0 428 1 487 331 78 40 chr1 179271548 179271918 -102921746 - ERVL LTR ERVL -1905 3091 2818 364 328 60 26 chr1 179272039 179272271 -102921393 - ERVL LTR ERVL -4684 1080 841 371 333 0 8 chr1 179272388 179272508 -102921156 - ERVL LTR ERVL -5167 597 479 3190 83 46 0 chr1 179273187 179273620 -102920044 + MLT2A2 LTR ERVL 1 453 0 43317 80 17 4 chr1 179273620 179278780 -102914884 + HERVL-A2 LTR ERVL 1 5240 -414 180 97 0 0 chr1 179278780 179278811 -102914853 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 43317 80 17 4 chr1 179278811 179279232 -102914432 + HERVL-A2 LTR ERVL 5240 5654 0 3113 106 25 0 chr1 179279232 179279674 -102913990 + MLT2A2 LTR ERVL 1 453 0 336 319 129 29 chr1 179279700 179279899 -102913765 - L2 LINE L2 -927 2387 2209 1585 194 10 23 chr1 179279899 179280198 -102913466 + AluJo SINE Alu 1 295 -17 336 319 129 29 chr1 179280198 179280384 -102913280 - L2 LINE L2 -1105 2209 1963 2672 195 109 30 chr1 179280539 179281086 -102912578 - LTR8A LTR ERV1 0 727 116 1102 121 211 0 chr1 179281086 179281276 -102912388 - MER30 DNA MER1_type 0 230 1 2672 195 109 30 chr1 179281276 179281400 -102912264 - LTR8A LTR ERV1 -611 116 3 853 278 37 4 chr1 179281450 179281695 -102911969 + MIR SINE MIR 8 260 -2 565 250 23 56 chr1 179281879 179282135 -102911529 + MER21B LTR ERV1 52 265 -598 * 4294 150 20 7 chr1 179282119 179282821 -102910843 - MER50 LTR ERV1 -23 711 1 756 187 0 8 chr1 179282977 179283111 -102910553 + AluJb SINE Alu 3 135 -177 1040 208 0 5 chr1 179283213 179283405 -102910259 + AluJb SINE Alu 113 303 -9 380 207 17 95 chr1 179283407 179283523 -102910141 + MER21-int LTR ERV1 2354 2460 -1731 1103 74 0 7 chr1 179283594 179283729 -102909935 - AluY SINE Alu -177 134 1 2232 181 81 19 chr1 179283729 179284160 -102909504 - LTR26B LTR ERV1 -73 458 1 199 299 90 52 chr1 179284176 179284310 -102909354 + MIR SINE MIR 65 203 -59 1108 211 161 52 chr1 179284690 179285130 -102908534 - MER50 LTR ERV1 -7 727 240 3563 135 26 2 chr1 179285304 179285845 -102907819 + MER41A LTR ERV1 1 554 0 25 0 0 0 chr1 179285863 179285888 -102907776 + AT_rich Low_complexity Low_complexity 1 25 0 1133 380 27 38 chr1 179285988 179286356 -102907308 - THE1B LTR MaLR 0 364 1 3898 178 63 32 chr1 179286600 179287435 -102906229 + MER4D LTR ERV1 1 861 -42 4782 104 8 0 chr1 179287730 179288383 -102905281 + PABL_A LTR ERV1 1 658 -2 5898 100 21 20 chr1 179288385 179289236 -102904428 + PABL_A-int LTR ERV1 2 853 -4162 3915 99 9 3 chr1 179289234 179289817 -102903847 + PABL_A-int LTR ERV1 1038 1623 -3392 * 6773 134 223 18 chr1 179289802 179291222 -102902442 + pTR5 LTR ERV1 728 2438 0 584 156 428 0 chr1 179291255 179291435 -102902229 - LTR8 LTR ERV1 -434 257 1 17502 98 47 10 chr1 179291435 179294306 -102899358 + PABL_A-int LTR ERV1 2398 5015 0 4618 108 22 0 chr1 179294306 179294952 -102898712 + PABL_A LTR ERV1 1 660 0 1988 138 98 17 chr1 179295374 179295721 -102897943 + THE1C LTR MaLR 1 375 0 9748 153 31 3 chr1 179295721 179297258 -102896406 + THE1C-int LTR MaLR 1 1580 0 2296 141 11 21 chr1 179297260 179297637 -102896027 + THE1C LTR MaLR 3 375 0 984 236 68 70 chr1 179297935 179298379 -102895285 + MLT2C2 LTR ERVL 22 464 0 470 283 37 21 chr1 179298447 179298638 -102895026 - L3 LINE CR1 -78 1499 1306 205 300 17 0 chr1 179299278 179299338 -102894326 - MIR SINE MIR -65 143 83 361 297 42 58 chr1 179300177 179300436 -102893228 - MER4B-int LTR ERV1 -2227 4531 4277 6427 68 22 2 chr1 179300480 179301341 -102892323 - MER4B-int LTR ERV1 -3273 2313 1436 641 94 0 0 chr1 179301338 179301423 -102892241 - MER4B-int LTR ERV1 -4302 1284 1200 * 606 125 29 0 chr1 179301429 179301533 -102892131 - MER4B-int LTR ERV1 -4583 1003 897 1229 163 79 16 chr1 179301647 179301899 -102891765 - MSTB LTR MaLR -158 268 1 311 305 98 0 chr1 179301955 179302119 -102891545 + MLT1J LTR MaLR 168 347 -164 3421 102 134 2 chr1 179302331 179302870 -102890794 + LTR66 LTR ERVL 1 610 0 13008 94 19 11 chr1 179302871 179304654 -102889010 + HERVL66 LTR ERVL 1 1797 -2532 9917 128 33 24 chr1 179304634 179306170 -102887494 + HERVL66 LTR ERVL 2654 4203 -126 * 2308 75 17 0 chr1 179356173 179356468 -102837196 + AluY SINE Alu 1 300 -11 264 248 15 45 chr1 179356732 179356776 -102836888 - L1M4 LINE L1 -3817 2329 2285 1808 147 37 27 chr1 179356776 179357076 -102836588 - AluSx SINE Alu -9 303 1 264 248 15 45 chr1 179357076 179357164 -102836500 - L1M4 LINE L1 -3861 2285 2201 201 272 0 44 chr1 179357176 179357290 -102836374 + T-rich Low_complexity Low_complexity 5 113 0 417 360 109 0 chr1 179357484 179357723 -102835941 - L1ME3A LINE L1 -283 5887 5623 320 283 99 45 chr1 179357856 179358157 -102835507 - L1M1 LINE L1 -749 5397 5113 2423 81 0 0 chr1 179358157 179358452 -102835212 + AluSc SINE Alu 1 295 -14 320 283 99 45 chr1 179358452 179358707 -102834957 - L1M1 LINE L1 -1033 5113 4873 207 0 0 0 chr1 179358707 179358730 -102834934 + (TG)n Simple_repeat Simple_repeat 1 23 0 320 283 99 45 chr1 179358730 179359000 -102834664 - L1M1 LINE L1 -1273 4873 4566 1372 231 182 31 chr1 179359017 179359527 -102834137 + ERVL LTR ERVL 2382 2968 -2796 928 201 20 10 chr1 179359520 179359724 -102833940 + ERVL LTR ERVL 3285 3490 -2274 * 216 0 0 0 chr1 179360359 179360383 -102833281 + (A)n Simple_repeat Simple_repeat 1 24 0 1178 333 58 0 chr1 179361767 179362178 -102831486 + LTR16A LTR ERVL 16 450 0 1739 170 10 13 chr1 179363047 179363353 -102830311 - AluSx SINE Alu -7 305 1 562 190 40 0 chr1 179363707 179363807 -102829857 + AluJb SINE Alu 188 291 -21 2014 226 70 81 chr1 179363828 179364497 -102829167 - MLT2F LTR ERVL 0 663 2 275 294 76 43 chr1 179364552 179364736 -102828928 + MIR SINE MIR 12 201 -61 479 246 58 47 chr1 179365104 179365275 -102828389 - MER5B DNA MER1_type -3 175 3 683 163 42 70 chr1 179365414 179365543 -102828121 - MLT1B LTR MaLR 0 505 265 595 171 63 32 chr1 179365780 179365938 -102827726 + MER65A LTR ERV1 283 445 0 * 1837 116 0 11 chr1 179365938 179366206 -102827458 - MLT1B LTR MaLR -125 265 1 970 152 35 66 chr1 179366600 179366856 -102826808 - L1MA9 LINE L1 -6 6306 6059 2030 210 0 6 chr1 179367625 179367991 -102825673 + MLT1A1 LTR MaLR 2 365 0 315 192 56 88 chr1 179368024 179368149 -102825515 - MIR SINE MIR -21 241 121 2866 7 0 0 chr1 179368961 179369265 -102824399 - AluY SINE Alu -7 304 1 193 279 0 0 chr1 179369790 179369833 -102823831 - MIR3 SINE MIR -16 192 150 349 312 0 0 chr1 179370048 179370141 -102823523 - MIR SINE MIR -60 148 56 423 239 64 28 chr1 179370196 179370305 -102823359 + L2 LINE L2 3150 3262 -10 727 294 39 16 chr1 179370335 179370590 -102823074 - MIR SINE MIR 0 262 2 297 200 57 0 chr1 179370602 179370672 -102822992 + L2 LINE L2 3235 3308 -5 2204 106 10 0 chr1 179371543 179371836 -102821828 + AluSx SINE Alu 1 296 -16 2417 75 10 0 chr1 179371836 179372144 -102821520 + AluY SINE Alu 1 311 0 253 279 90 25 chr1 179372361 179372486 -102821178 + MIR SINE MIR 9 130 -78 180 152 0 0 chr1 179372833 179372866 -102820798 + (TG)n Simple_repeat Simple_repeat 2 34 0 338 279 127 62 chr1 179373335 179373568 -102820096 - MIR SINE MIR -4 258 1 240 86 0 0 chr1 179374062 179374097 -102819567 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 572 235 70 78 chr1 179374946 179375060 -102818604 + MIR SINE MIR 22 135 -127 2196 110 13 0 chr1 179375060 179375359 -102818305 + AluSg SINE Alu 1 303 -7 572 235 70 78 chr1 179375359 179375487 -102818177 + MIR SINE MIR 135 262 0 701 212 15 8 chr1 179376235 179376367 -102817297 - FLAM_C SINE Alu 0 133 1 330 238 100 0 chr1 179376534 179376614 -102817050 + L2 LINE L2 3215 3302 -11 * 847 319 7 7 chr1 179376612 179376885 -102816779 + L3 LINE CR1 1303 1575 -2 216 182 0 0 chr1 179377883 179377927 -102815737 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 224 265 0 59 chr1 179378204 179378272 -102815392 + MIR SINE MIR 148 211 -51 316 279 128 65 chr1 179378302 179378747 -102814917 - L2 LINE L2 -177 3095 2625 357 296 96 0 chr1 179378785 179378910 -102814754 - L2 LINE L2 -3 3310 3174 199 343 43 0 chr1 179379437 179379507 -102814157 + MIR SINE MIR 41 113 -95 369 0 0 0 chr1 179379959 179380000 -102813664 + (TG)n Simple_repeat Simple_repeat 1 41 0 301 303 82 8 chr1 179380213 179380335 -102813329 + MIR SINE MIR 113 243 -19 * 504 167 48 48 chr1 179380327 179380453 -102813211 - MIR SINE MIR -21 241 116 2387 61 0 48 chr1 179380538 179380851 -102812813 + AluY SINE Alu 1 298 -13 572 213 65 32 chr1 179381837 179381992 -102811672 + MIR SINE MIR 59 218 -44 288 382 9 9 chr1 179382009 179382119 -102811545 - L2 LINE L2 0 3272 3163 190 306 102 27 chr1 179382264 179382411 -102811253 + L3 LINE CR1 1021 1178 -399 1104 293 52 48 chr1 179382416 179382450 -102811214 - L2 LINE L2 -18 3295 3263 1761 123 41 0 chr1 179382450 179382725 -102810939 - AluSx SINE Alu 0 314 30 1104 293 52 48 chr1 179382725 179383147 -102810517 - L2 LINE L2 -50 3263 2836 1181 275 72 63 chr1 179383253 179383903 -102809761 - MER21B LTR ERV1 -186 677 22 2978 242 142 13 chr1 179383924 179384940 -102808724 - L2 LINE L2 -508 2806 1660 717 294 15 0 chr1 179384951 179385148 -102808516 + L3 LINE CR1 1183 1382 -195 763 257 5 35 chr1 179385511 179385713 -102807951 + MIR3 SINE MIR 6 201 -7 186 321 0 0 chr1 179385825 179385878 -102807786 - L3b LINE CR1 -198 1385 1333 416 297 101 91 chr1 179386980 179387278 -102806386 + L2 LINE L2 2804 3110 -162 2489 120 52 47 chr1 179387278 179387353 -102806311 - MSTB LTR MaLR 0 426 353 2275 72 0 24 chr1 179387353 179387646 -102806018 + AluY SINE Alu 5 290 -21 2489 120 52 47 chr1 179387646 179387994 -102805670 - MSTB LTR MaLR -73 353 1 416 297 101 91 chr1 179387994 179388159 -102805505 + L2 LINE L2 3110 3272 0 206 291 68 60 chr1 179388574 179388691 -102804973 + L2 LINE L2 3196 3313 0 244 254 79 0 chr1 179391061 179391124 -102802540 - L2 LINE L2 -1 3271 3204 334 218 197 84 chr1 179391801 179391943 -102801721 + MIR3 SINE MIR 41 198 -10 199 343 43 0 chr1 179393782 179393852 -102799812 - L2 LINE L2 -2 3270 3198 284 230 0 35 chr1 179394044 179394131 -102799533 + GA-rich Low_complexity Low_complexity 1 84 0 236 256 98 24 chr1 179394882 179394964 -102798700 + MIR SINE MIR 13 100 -162 900 222 84 13 chr1 179394981 179395206 -102798458 - MIR SINE MIR -14 248 8 4481 171 49 41 chr1 179395218 179396072 -102797592 - MER21B LTR ERV1 -2 861 1 183 250 0 0 chr1 179396133 179396173 -102797491 + L2 LINE L2 3263 3302 -11 380 306 52 8 chr1 179397332 179397466 -102796198 - MIR SINE MIR -71 191 52 270 0 0 0 chr1 179397936 179397966 -102795698 + (TG)n Simple_repeat Simple_repeat 1 30 0 241 237 51 0 chr1 179397966 179398025 -102795639 + (CATG)n Simple_repeat Simple_repeat 1 62 0 23 33 0 0 chr1 179398026 179398056 -102795608 + AT_rich Low_complexity Low_complexity 1 30 0 436 311 41 31 chr1 179398267 179398463 -102795201 + MIR SINE MIR 20 217 -45 26 30 0 0 chr1 179398477 179398510 -102795154 + AT_rich Low_complexity Low_complexity 1 33 0 348 263 78 28 chr1 179398608 179398764 -102794900 - MIR SINE MIR -64 144 41 429 222 94 58 chr1 179399085 179399256 -102794408 + MIR3 SINE MIR 21 197 -11 228 182 0 0 chr1 179399925 179399969 -102793695 + (CA)n Simple_repeat Simple_repeat 2 45 0 188 214 24 0 chr1 179400086 179400128 -102793536 + MIR SINE MIR 36 78 -130 1089 220 31 20 chr1 179400406 179400661 -102793003 + AluJb SINE Alu 7 264 -48 381 22 0 0 chr1 179400812 179400858 -102792806 + (CA)n Simple_repeat Simple_repeat 2 47 0 184 0 120 0 chr1 179401777 179401802 -102791862 + MIR SINE MIR 117 144 -118 410 309 36 7 chr1 179402544 179402683 -102790981 + MIR3 SINE MIR 31 173 -35 440 327 166 14 chr1 179402707 179402918 -102790746 + MIR SINE MIR 20 262 0 295 271 186 57 chr1 179402943 179403121 -102790543 + MIR3 SINE MIR 9 207 -55 198 304 228 0 chr1 179403112 179403204 -102790460 + L2 LINE L2 3195 3307 -6 * 235 280 0 0 chr1 179403220 179403270 -102790394 - MIR SINE MIR -68 140 91 978 169 16 5 chr1 179403271 179403455 -102790209 - MER20 DNA MER1_type -33 186 1 263 321 0 12 chr1 179403455 179403536 -102790128 - MIR3 SINE MIR -125 83 4 295 272 169 7 chr1 179403954 179404090 -102789574 - MIR3 SINE MIR -10 198 41 183 80 0 0 chr1 179404221 179404246 -102789418 + (TGGGGG)n Simple_repeat Simple_repeat 3 27 0 243 282 9 82 chr1 179404537 179404647 -102789017 + G-rich Low_complexity Low_complexity 2 103 0 189 291 0 0 chr1 179406355 179406410 -102787254 + MIR SINE MIR 183 237 -25 1155 122 29 6 chr1 179406416 179406588 -102787076 + AluSg SINE Alu 1 176 -134 701 125 0 0 chr1 179406693 179406797 -102786867 + AluY SINE Alu 204 307 -4 274 270 32 0 chr1 179407508 179407571 -102786093 - MIR SINE MIR -8 254 190 2286 110 3 3 chr1 179407878 179408186 -102785478 + AluSx SINE Alu 2 309 -3 244 132 0 0 chr1 179408242 179408280 -102785384 - LTR24 LTR ERV1 -320 147 110 218 230 24 143 chr1 179410948 179411074 -102782590 + L2 LINE L2 3183 3293 -20 511 311 12 30 chr1 179411894 179412058 -102781606 + MIR3 SINE MIR 47 207 -1 491 296 93 17 chr1 179412810 179412982 -102780682 - MIR3 SINE MIR -14 194 10 283 210 210 12 chr1 179413809 179413890 -102779774 - L2 LINE L2 -8 3264 3168 474 291 35 41 chr1 179414077 179414249 -102779415 + MIR3 SINE MIR 20 190 -18 258 318 25 33 chr1 179415284 179415405 -102778259 + MIR SINE MIR 34 152 -67 2310 89 26 0 chr1 179415772 179416075 -102777589 + AluY SINE Alu 1 311 0 1680 161 63 203 chr1 179416097 179416515 -102777149 - MER69 DNA AcHobo -7 2519 2044 2042 117 4 11 chr1 179416515 179416796 -102776868 + AluSg SINE Alu 1 279 -31 186 43 0 0 chr1 179416802 179416825 -102776839 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1680 161 63 203 chr1 179416825 179416863 -102776801 - MER69 DNA AcHobo -487 2039 1997 826 228 12 0 chr1 179416863 179417025 -102776639 + FRAM SINE Alu 1 164 -12 1680 161 63 203 chr1 179417025 179417400 -102776264 - MER69 DNA AcHobo -529 1997 1659 1353 240 94 16 chr1 179417437 179417821 -102775843 - MER69 DNA AcHobo -532 694 281 1898 119 35 48 chr1 179417821 179418131 -102775533 + AluSq SINE Alu 1 306 -7 231 96 58 0 chr1 179418144 179418196 -102775468 + GA-rich Low_complexity Low_complexity 4 58 0 308 333 86 31 chr1 179419443 179419605 -102774059 + L3b LINE CR1 1345 1515 -68 623 229 166 13 chr1 179420629 179420786 -102772878 + MER5A DNA MER1_type 9 189 0 2084 136 0 0 chr1 179420836 179421131 -102772533 - AluSx SINE Alu -17 295 1 636 244 83 0 chr1 179421602 179421770 -102771894 - MIR SINE MIR 0 262 81 23 0 0 0 chr1 179422761 179422784 -102770880 + AT_rich Low_complexity Low_complexity 1 23 0 271 352 102 0 chr1 179423190 179423298 -102770366 + L2 LINE L2 3116 3234 -38 252 298 0 53 chr1 179424481 179424575 -102769089 - MIR SINE MIR -109 153 65 647 249 63 26 chr1 179425803 179425992 -102767672 + MIR SINE MIR 44 239 -23 316 278 71 53 chr1 179426331 179426500 -102767164 + MIR SINE MIR 58 229 -33 397 260 113 21 chr1 179426851 179426994 -102766670 + MIR SINE MIR 35 191 -61 330 208 138 94 chr1 179427657 179427690 -102765974 + MIR SINE MIR 97 127 -135 1539 184 56 14 chr1 179427690 179427978 -102765686 + AluJo SINE Alu 1 300 -12 330 208 138 94 chr1 179427978 179428103 -102765561 + MIR SINE MIR 127 262 0 198 0 0 0 chr1 179428368 179428390 -102765274 + (CA)n Simple_repeat Simple_repeat 2 23 0 683 299 36 5 chr1 179428472 179428666 -102764998 - MIR SINE MIR -4 258 59 357 24 0 0 chr1 179430574 179430616 -102763048 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1000 267 98 0 chr1 179430619 179430885 -102762779 - MER69 DNA AcHobo -2234 292 1 542 328 71 5 chr1 179432130 179432328 -102761336 + MIR SINE MIR 34 244 -18 511 341 80 50 chr1 179433441 179434239 -102759425 - L2 LINE L2 -52 3220 2380 181 261 22 0 chr1 179434919 179434965 -102758699 - MIR SINE MIR -78 130 84 423 327 52 84 chr1 179434985 179435236 -102758428 + L2 LINE L2 3029 3271 -1 260 311 14 0 chr1 179435893 179435967 -102757697 + MIR SINE MIR 44 118 -90 21 0 0 0 chr1 179437636 179437657 -102756007 + AT_rich Low_complexity Low_complexity 1 21 0 906 261 31 43 chr1 179437853 179438110 -102755554 - MIR SINE MIR 0 262 9 493 249 54 97 chr1 179438589 179438724 -102754940 + MER5B DNA MER1_type 2 128 -50 2195 136 0 0 chr1 179438724 179439034 -102754630 + AluSx SINE Alu 1 310 -2 493 249 54 97 chr1 179439034 179439083 -102754581 + MER5B DNA MER1_type 128 178 0 2355 116 7 0 chr1 179439489 179439799 -102753865 + AluSx SINE Alu 1 312 0 979 289 48 43 chr1 179439896 179440312 -102753352 + L2 LINE L2 2894 3311 -2 1090 205 119 12 chr1 179441246 179441490 -102752174 + AluJb SINE Alu 1 270 -42 441 0 0 0 chr1 179441497 179441546 -102752118 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 2187 107 13 0 chr1 179441952 179442260 -102751404 + AluSx SINE Alu 1 312 0 308 326 34 0 chr1 179442539 179442628 -102751036 + MIR SINE MIR 55 146 -62 1281 192 52 120 chr1 179442639 179443046 -102750618 - MLT1B LTR MaLR -11 379 1 225 349 62 7 chr1 179444117 179444263 -102749401 - L2 LINE L2 -203 3069 2916 243 300 0 0 chr1 179445103 179445163 -102748501 - L2 LINE L2 -3 3269 3210 1194 264 63 35 chr1 179445364 179445758 -102747906 - MLT1I LTR MaLR -4 405 1 835 175 93 6 chr1 179445788 179445947 -102747717 + MLT1A1 LTR MaLR 1 179 -186 180 0 0 0 chr1 179445947 179445967 -102747697 + (TC)n Simple_repeat Simple_repeat 1 20 0 835 175 93 6 chr1 179445967 179445990 -102747674 + MLT1A1 LTR MaLR 179 199 -166 577 195 25 3 chr1 179446320 179446472 -102747192 + MLT1A2 LTR MaLR 232 372 -2 548 236 84 39 chr1 179446474 179446652 -102747012 + MIR SINE MIR 77 262 0 184 347 14 0 chr1 179446927 179446999 -102746665 + MIR SINE MIR 89 161 -101 409 298 74 50 chr1 179448182 179448424 -102745240 - MIR SINE MIR 0 262 15 * 420 365 41 9 chr1 179448395 179448614 -102745050 + L2 LINE L2 2640 2865 -449 976 249 22 18 chr1 179448628 179448857 -102744807 - MIR SINE MIR -1 261 32 2423 189 17 7 chr1 179449030 179449449 -102744215 - MSTB LTR MaLR -2 424 2 9607 176 17 2 chr1 179449450 179451075 -102742589 - MSTB-int LTR MaLR 0 1651 2 1212 164 37 25 chr1 179451077 179451321 -102742343 - MSTB LTR MaLR -2 424 178 245 261 0 0 chr1 179451540 179451586 -102742078 - MIR SINE MIR -214 48 3 307 91 0 0 chr1 179451606 179451650 -102742014 + LTR7 LTR ERV1 1 44 -406 502 314 26 0 chr1 179452666 179452822 -102740842 - MIR3 SINE MIR -12 196 37 275 376 73 11 chr1 179456469 179456647 -102737017 + MIR3 SINE MIR 2 190 -18 195 42 0 0 chr1 179458312 179458336 -102735328 + (TAA)n Simple_repeat Simple_repeat 1 24 0 48 18 0 0 chr1 179458881 179458936 -102734728 + AT_rich Low_complexity Low_complexity 1 55 0 239 48 0 71 chr1 179459517 179459559 -102734105 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 613 196 0 0 chr1 179459565 179459667 -102733997 - FLAM_C SINE Alu -40 103 2 427 267 61 0 chr1 179460668 179460799 -102732865 + L2 LINE L2 2917 3055 -217 1239 165 80 107 chr1 179461108 179461568 -102732096 - LTR7 LTR ERV1 -2 448 1 232 261 0 0 chr1 179461588 179461634 -102732030 + MIR SINE MIR 3 48 -214 738 266 63 39 chr1 179461699 179461985 -102731679 + MLT1I LTR MaLR 117 409 0 290 235 128 20 chr1 179461996 179462098 -102731566 + MIR SINE MIR 57 169 -93 233 303 49 33 chr1 179462254 179462376 -102731288 + MIR SINE MIR 20 143 -65 187 250 0 0 chr1 179463103 179463147 -102730517 - L3b LINE CR1 -9 1574 1531 297 204 39 87 chr1 179463259 179463362 -102730302 + MIR SINE MIR 44 141 -67 637 269 150 61 chr1 179463366 179463495 -102730169 - L2 LINE L2 -1 3312 3196 2765 110 21 0 chr1 179463495 179463931 -102729733 - LTR56 LTR ERV1 0 445 1 637 269 150 61 chr1 179463931 179464318 -102729346 - L2 LINE L2 -117 3196 2751 371 152 61 0 chr1 179464333 179464399 -102729265 - MER116 DNA Mariner -10 70 1 514 310 15 81 chr1 179464429 179464764 -102728900 - L3 LINE CR1 -143 1434 1122 437 278 28 0 chr1 179465222 179465330 -102728334 + MIR SINE MIR 49 159 -103 368 250 69 7 chr1 179465371 179465515 -102728149 + L2 LINE L2 2533 2685 -629 1330 150 175 41 chr1 179465580 179465745 -102727919 - MLT1A1 LTR MaLR 0 365 224 2417 80 0 0 chr1 179465745 179466034 -102727630 - AluSc SINE Alu -13 296 8 1330 150 175 41 chr1 179466034 179466188 -102727476 - MLT1A1 LTR MaLR -141 224 3 520 282 102 0 chr1 179466209 179466425 -102727239 + L2 LINE L2 2662 2899 -415 222 260 68 0 chr1 179467189 179467262 -102726402 + MIR3 SINE MIR 131 208 0 2271 113 124 5 chr1 179467469 179467849 -102725815 - MSTA LTR MaLR -3 425 1 1024 171 0 23 chr1 179467928 179468104 -102725560 - AluJb SINE Alu -5 307 136 2027 136 17 0 chr1 179468353 179468647 -102725017 + AluSq SINE Alu 1 299 -14 318 132 0 0 chr1 179468671 179468724 -102724940 + (GGGA)n Simple_repeat Simple_repeat 3 55 0 244 289 62 23 chr1 179469228 179469356 -102724308 + L2 LINE L2 3160 3292 -21 721 272 59 74 chr1 179469656 179470127 -102723537 + LTR16B LTR ERVL 1 464 0 444 279 74 46 chr1 179470945 179471228 -102722436 + HAL1b LINE L1 406 696 -652 302 216 80 34 chr1 179471850 179471938 -102721726 + L1ME4a LINE L1 5980 6071 -50 21 0 0 0 chr1 179472022 179472043 -102721621 + AT_rich Low_complexity Low_complexity 1 21 0 264 303 84 0 chr1 179472050 179472192 -102721472 + L1ME4a LINE L1 5967 6120 -1 2190 121 7 7 chr1 179472203 179472500 -102721164 + AluSx SINE Alu 1 297 -15 1978 137 3 24 chr1 179473587 179473880 -102719784 + AluJo SINE Alu 10 296 -16 193 204 0 41 chr1 179474065 179474114 -102719550 - L2 LINE L2 -5 3267 3221 354 297 31 0 chr1 179474368 179474496 -102719168 + L1ME4a LINE L1 5671 5802 -319 2218 125 0 0 chr1 179474701 179475013 -102718651 + AluSx SINE Alu 1 312 0 356 138 15 0 chr1 179475020 179475085 -102718579 + GA-rich Low_complexity Low_complexity 3 68 0 237 263 59 66 chr1 179476462 179476614 -102717050 + L1ME4a LINE L1 5968 6118 -3 424 212 124 18 chr1 179476710 179476823 -102716841 + MER63 DNA MER1_type 1 751 -311 264 212 227 0 chr1 179476863 179476929 -102716735 + MER63 DNA MER1_type 978 1058 -3 227 320 20 10 chr1 179480616 179480716 -102712948 + L2 LINE L2 2917 3017 -255 545 340 89 37 chr1 179481224 179481604 -102712060 + L2 LINE L2 2873 3272 0 349 291 214 0 chr1 179482073 179482190 -102711474 - L3 LINE CR1 -1 1576 1435 25 0 0 0 chr1 179482521 179482546 -102711118 + AT_rich Low_complexity Low_complexity 1 25 0 204 256 51 0 chr1 179483430 179483508 -102710156 + CT-rich Low_complexity Low_complexity 1 82 0 540 299 6 24 chr1 179485122 179485286 -102708378 - MIR3 SINE MIR -15 193 33 293 245 66 38 chr1 179485926 179486032 -102707632 + MIR3 SINE MIR 94 202 -6 378 0 0 0 chr1 179486890 179486932 -102706732 + (TG)n Simple_repeat Simple_repeat 1 42 0 408 261 79 30 chr1 179487332 179487497 -102706167 + MIR SINE MIR 66 238 -24 424 290 180 20 chr1 179487860 179488060 -102705604 + MIR SINE MIR 31 262 0 232 250 0 15 chr1 179488850 179488918 -102704746 + (TCTCTG)n Simple_repeat Simple_repeat 5 71 0 202 214 0 0 chr1 179488925 179488967 -102704697 + (TG)n Simple_repeat Simple_repeat 1 42 0 387 330 78 17 chr1 179490985 179491215 -102702449 - MIR SINE MIR 0 262 19 287 233 44 11 chr1 179491229 179491319 -102702345 - MIR3 SINE MIR -32 176 84 617 213 81 30 chr1 179493266 179493463 -102700201 + MIR3 SINE MIR 1 207 -1 249 250 0 0 chr1 179494350 179494402 -102699262 - L2 LINE L2 0 3272 3221 395 181 106 0 chr1 179494492 179494595 -102699069 + MIR SINE MIR 37 150 -78 217 254 15 15 chr1 179495232 179495299 -102698365 + CT-rich Low_complexity Low_complexity 1 67 0 219 88 0 0 chr1 179496886 179496920 -102696744 + (TTGG)n Simple_repeat Simple_repeat 3 36 0 2091 116 14 3 chr1 179496921 179497206 -102696458 - AluSx SINE Alu -24 288 1 219 248 117 44 chr1 179497263 179497400 -102696264 + MIR SINE MIR 8 154 -108 479 272 55 79 chr1 179498751 179499005 -102694659 + MIR SINE MIR 15 262 0 480 339 41 15 chr1 179499833 179500028 -102693636 - MIR SINE MIR -56 206 7 1427 163 10 0 chr1 179500275 179500484 -102693180 + AluJo SINE Alu 5 215 -97 361 328 42 0 chr1 179500567 179500686 -102692978 - L2 LINE L2 0 3272 3149 2214 94 0 14 chr1 179501429 179501739 -102691925 + AluSx SINE Alu 1 306 0 509 287 8 0 chr1 179502258 179502387 -102691277 - MIR3 SINE MIR -22 186 57 726 239 111 12 chr1 179502392 179502618 -102691046 - MIR SINE MIR 0 262 19 362 301 39 10 chr1 179502714 179502817 -102690847 - MIR SINE MIR -65 143 38 435 229 9 19 chr1 179502933 179503038 -102690626 + MIR SINE MIR 41 144 -64 220 205 0 0 chr1 179503428 179503467 -102690197 - L2 LINE L2 -94 3219 3181 1069 141 47 38 chr1 179503635 179503848 -102689816 + L1MC2 LINE L1 6116 6330 -14 595 189 0 0 chr1 179503853 179503959 -102689705 + FLAM_A SINE Alu 4 109 -33 243 0 0 0 chr1 179504009 179504036 -102689628 + (CA)n Simple_repeat Simple_repeat 2 28 0 905 194 92 9 chr1 179504680 179504897 -102688767 + MER46C DNA MER2_type 104 338 0 185 333 44 11 chr1 179504898 179504988 -102688676 + MIR SINE MIR 157 249 -13 2913 7 0 0 chr1 179506144 179506451 -102687213 - AluY SINE Alu -4 307 1 531 335 28 0 chr1 179507639 179507818 -102685846 + MIR SINE MIR 52 235 -27 311 290 6 57 chr1 179507883 179508059 -102685605 + C-rich Low_complexity Low_complexity 3 169 0 391 264 70 47 chr1 179508458 179508587 -102685077 - MIR3 SINE MIR -6 202 71 311 310 86 23 chr1 179508646 179508820 -102684844 + MER5A DNA MER1_type 5 189 0 446 248 53 0 chr1 179509523 179509636 -102684028 - L2 LINE L2 -22 3250 3132 322 252 159 0 chr1 179509679 179509786 -102683878 + MIR SINE MIR 133 256 -6 2433 93 0 0 chr1 179510013 179510314 -102683350 - AluY SINE Alu -10 301 1 502 314 26 0 chr1 179511657 179511813 -102681851 - MIR3 SINE MIR -12 196 37 1601 92 5 5 chr1 179513836 179514043 -102679621 - AluSg SINE Alu -103 207 1 1206 208 54 6 chr1 179514054 179514386 -102679278 - LTR37A LTR ERV1 -28 398 51 662 308 114 59 chr1 179514440 179514601 -102679063 + L2 LINE L2 1929 2080 -1234 2142 141 0 0 chr1 179514601 179514899 -102678765 - AluSq SINE Alu -15 298 1 662 308 114 59 chr1 179514899 179515186 -102678478 + L2 LINE L2 2080 2350 -964 1375 164 13 55 chr1 179515186 179515497 -102678167 - AluJo SINE Alu 0 302 5 662 308 114 59 chr1 179515497 179515918 -102677746 + L2 LINE L2 2350 2847 -467 248 324 56 0 chr1 179516258 179516329 -102677335 + L2 LINE L2 3107 3181 -91 270 365 83 35 chr1 179516534 179516679 -102676985 - L2 LINE L2 -5 3267 3116 21 89 0 0 chr1 179516963 179517019 -102676645 + GC_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr1 179517228 179517257 -102676407 + GC_rich Low_complexity Low_complexity 1 29 0 220 275 116 0 chr1 179517525 179517594 -102676070 - L2 LINE L2 -56 3216 3140 249 57 0 0 chr1 179517835 179517870 -102675794 + (GA)n Simple_repeat Simple_repeat 2 36 0 2350 105 0 16 chr1 179518029 179518344 -102675320 + AluSg SINE Alu 1 310 0 2060 124 26 10 chr1 179518362 179518668 -102674996 + AluSx SINE Alu 1 311 -1 399 266 57 8 chr1 179518846 179518970 -102674694 + MIR3 SINE MIR 75 204 -4 238 240 10 48 chr1 179519961 179520065 -102673599 + GA-rich Low_complexity Low_complexity 6 105 0 184 327 0 0 chr1 179520584 179520636 -102673028 + L2 LINE L2 3262 3313 0 190 269 58 0 chr1 179520673 179520725 -102672939 - MIR SINE MIR -91 171 117 189 0 0 0 chr1 179520798 179520819 -102672845 + (A)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr1 179520873 179520899 -102672765 + AT_rich Low_complexity Low_complexity 1 26 0 2501 87 3 0 chr1 179520906 179521217 -102672447 + AluSx SINE Alu 1 312 0 476 311 33 13 chr1 179522340 179522491 -102671173 - MIR SINE MIR -33 229 76 1950 197 77 4 chr1 179522837 179523303 -102670361 - Charlie4a DNA MER1_type -1 507 8 273 284 147 2 chr1 179524052 179524213 -102669451 + MIR SINE MIR 16 206 -56 261 195 136 47 chr1 179524563 179524683 -102668981 - MIR SINE MIR -59 149 36 2438 92 0 3 chr1 179524724 179525029 -102668635 + AluSx SINE Alu 5 308 -4 225 309 99 0 chr1 179525687 179525768 -102667896 - MIR SINE MIR -48 214 126 483 196 124 34 chr1 179525806 179525866 -102667798 - Charlie1 DNA MER1_type 0 2761 2708 2397 84 3 3 chr1 179525866 179526163 -102667501 + AluSg SINE Alu 1 297 -13 483 196 124 34 chr1 179526163 179526311 -102667353 - Charlie1 DNA MER1_type -53 2708 2534 665 217 86 7 chr1 179526337 179526489 -102667175 - Charlie1 DNA MER1_type -2597 164 1 2096 136 7 0 chr1 179527039 179527348 -102666316 + AluSx SINE Alu 1 311 -1 223 381 57 0 chr1 179528537 179528642 -102665022 + L3b LINE CR1 1426 1536 -47 2518 78 0 0 chr1 179528907 179529213 -102664451 - AluSc SINE Alu 0 309 4 497 332 100 50 chr1 179529352 179529831 -102663833 + L2 LINE L2 2810 3312 -1 189 0 0 0 chr1 179531149 179531170 -102662494 + (A)n Simple_repeat Simple_repeat 1 21 0 392 221 171 0 chr1 179532072 179532212 -102661452 - L1MD3 LINE L1 0 7995 7832 419 202 0 12 chr1 179532218 179532302 -102661362 - L1MD2 LINE L1 -230 6129 6047 2243 88 14 7 chr1 179532303 179532597 -102661067 + AluSx SINE Alu 1 296 -16 760 189 66 9 chr1 179532603 179532815 -102660849 - L1MDa LINE L1 -4234 2306 2083 26 0 0 0 chr1 179532840 179532866 -102660798 + AT_rich Low_complexity Low_complexity 1 26 0 2212 207 37 87 chr1 179533023 179533727 -102659937 - L1MDa LINE L1 -5834 706 38 497 306 24 18 chr1 179533812 179533982 -102659682 + MIR SINE MIR 34 204 -58 1001 253 146 19 chr1 179534215 179534579 -102659085 + MLT1D LTR MaLR 95 504 -1 463 167 56 22 chr1 179534580 179534670 -102658994 - MIR3 SINE MIR -33 175 83 1389 166 58 54 chr1 179534685 179534836 -102658828 - AluJb SINE Alu -33 279 125 189 0 0 0 chr1 179534836 179534857 -102658807 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1389 166 58 54 chr1 179534857 179534983 -102658681 - AluJb SINE Alu -187 125 1 711 184 0 46 chr1 179534992 179535166 -102658498 - L1MB8 LINE L1 -1 6177 6012 2062 105 0 87 chr1 179536333 179536530 -102657134 - AluSq SINE Alu -1 312 154 2441 78 0 3 chr1 179536530 179536838 -102656826 - AluY SINE Alu -4 307 1 2062 105 0 87 chr1 179536838 179536972 -102656692 - AluSq SINE Alu -159 154 10 233 318 15 0 chr1 179537042 179537108 -102656556 - MIR SINE MIR -137 125 59 683 203 47 39 chr1 179537218 179537450 -102656214 - L1MA9 LINE L1 0 6312 6079 2337 112 0 6 chr1 179537542 179537856 -102655808 - AluSx SINE Alu 0 312 1 202 205 0 0 chr1 179538091 179538130 -102655534 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 33 0 0 0 chr1 179538151 179538184 -102655480 + AT_rich Low_complexity Low_complexity 1 33 0 200 118 0 78 chr1 179538484 179538535 -102655129 + (TTTC)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr1 179538589 179538613 -102655051 + AT_rich Low_complexity Low_complexity 1 24 0 7720 27 2 0 chr1 179538613 179539854 -102653810 - L1PA4 LINE L1 -8 6147 4906 219 94 31 0 chr1 179539859 179539891 -102653773 - MIR SINE MIR -10 252 220 2042 187 67 73 chr1 179539902 179540410 -102653254 + MLT1D LTR MaLR 1 505 0 207 0 0 0 chr1 179540434 179540457 -102653207 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 972 333 130 37 chr1 179540488 179541505 -102652159 + L2 LINE L2 1750 2860 -454 481 293 36 42 chr1 179541565 179541732 -102651932 + MIR SINE MIR 13 178 -84 247 368 117 13 chr1 179541793 179542032 -102651632 + L2 LINE L2 2923 3186 -86 2240 113 3 0 chr1 179542655 179542955 -102650709 - AluSc SINE Alu -8 301 1 486 307 74 54 chr1 179543305 179543601 -102650063 - L2 LINE L2 -5 3267 2966 1886 193 50 128 chr1 179543740 179544256 -102649408 - MER70B LTR ERVL 0 578 118 2190 130 0 0 chr1 179544256 179544549 -102649115 - AluSx SINE Alu -19 293 1 1886 193 50 128 chr1 179544549 179544658 -102649006 - MER70B LTR ERVL -460 118 2 18592 166 24 15 chr1 179544667 179545014 -102648650 - MER70B-int LTR ERVL 0 5023 4681 243 0 0 0 chr1 179545014 179545041 -102648623 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 18592 166 24 15 chr1 179545041 179547667 -102645997 - MER70B-int LTR ERVL -342 4681 2011 2296 89 0 3 chr1 179547667 179547979 -102645685 - AluSc SINE Alu 0 312 2 18592 166 24 15 chr1 179547979 179548374 -102645290 - MER70B-int LTR ERVL -3012 2011 1621 7319 149 8 9 chr1 179548374 179549567 -102644097 - MER70B-int LTR ERVL -3832 1191 1 2047 235 27 0 chr1 179549569 179550045 -102643619 - MER70B LTR ERVL 0 578 90 875 159 0 31 chr1 179550044 179550207 -102643457 - MER70B LTR ERVL -419 159 2 * 2319 106 35 27 chr1 179550778 179551329 -102642335 + MER51A LTR ERV1 1 634 0 224 309 274 24 chr1 179551901 179552273 -102641391 - L2 LINE L2 -375 2939 2475 223 296 4 0 chr1 179552487 179552558 -102641106 - MIR SINE MIR -79 129 57 1612 142 0 16 chr1 179554283 179554530 -102639134 + AluJb SINE Alu 67 309 -3 279 347 67 80 chr1 179555717 179555942 -102637722 + L2 LINE L2 3034 3255 -17 203 271 43 59 chr1 179557531 179557641 -102636023 - MIR SINE MIR -102 106 2 432 213 60 148 chr1 179558386 179558602 -102635062 - L1ME4a LINE L1 -10 6111 5915 398 204 11 0 chr1 179558987 179559075 -102634589 - MER33 DNA MER1_type -1 323 235 627 199 29 44 chr1 179559079 179559215 -102634449 - FLAM_C SINE Alu -8 135 2 714 152 61 76 chr1 179559218 179559300 -102634364 - MER33 DNA MER1_type -2353 232 150 2195 108 0 14 chr1 179559300 179559597 -102634067 + AluSg SINE Alu 1 293 -17 714 152 61 76 chr1 179559597 179559712 -102633952 - MER33 DNA MER1_type -2435 150 38 470 124 101 0 chr1 179559914 179560003 -102633661 + MER4A LTR ERV1 1 98 -566 1612 131 22 78 chr1 179560003 179560369 -102633295 + MER4A LTR ERV1 261 664 0 576 160 9 9 chr1 179560435 179560541 -102633123 - MLT1D LTR MaLR -35 470 365 2360 165 11 55 chr1 179560553 179561097 -102632567 - MER41B LTR ERV1 -12 597 114 1062 251 76 86 chr1 179561098 179561257 -102632407 - L2 LINE L2 -431 2883 2724 1878 172 3 0 chr1 179561257 179561548 -102632116 - AluJo SINE Alu -7 305 14 1062 251 76 86 chr1 179561548 179561902 -102631762 - L2 LINE L2 -590 2724 2375 302 275 53 11 chr1 179561961 179562113 -102631551 - MIR SINE MIR -62 146 22 2217 106 3 0 chr1 179562235 179562528 -102631136 - AluSp SINE Alu -18 295 2 390 202 90 34 chr1 179563348 179563437 -102630227 - L2 LINE L2 -40 3273 3180 435 289 53 0 chr1 179565069 179565183 -102628481 - L2 LINE L2 -15 3257 3138 330 246 182 27 chr1 179565439 179565549 -102628115 - MIR SINE MIR -44 218 92 438 271 8 8 chr1 179565901 179566030 -102627634 + MIR SINE MIR 132 260 -2 414 154 0 0 chr1 179566460 179566538 -102627126 + GA-rich Low_complexity Low_complexity 2 79 0 540 334 72 12 chr1 179566946 179567325 -102626339 - L3 LINE CR1 -53 1524 1071 273 273 90 95 chr1 179567560 179568369 -102625295 + L1MEd LINE L1 243 1049 -5070 1502 188 108 35 chr1 179568369 179568795 -102624869 - MSTB2 LTR MaLR 0 457 1 273 273 90 95 chr1 179568795 179568851 -102624813 + L1MEd LINE L1 1049 1104 -5015 404 276 48 0 chr1 179568960 179569065 -102624599 - L1ME LINE L1 -442 5728 5619 * 904 192 32 8 chr1 179569064 179569314 -102624350 + L1 LINE L1 3040 3295 -2851 388 204 31 20 chr1 179569767 179569865 -102623799 - L2 LINE L2 -1 3312 3214 2626 52 3 0 chr1 179569876 179570186 -102623478 - AluY SINE Alu 0 311 1 222 306 0 71 chr1 179570271 179570300 -102623364 - L2 LINE L2 0 3313 3284 2150 134 3 0 chr1 179570300 179570605 -102623059 - AluSx SINE Alu -4 308 3 222 306 0 71 chr1 179570605 179570660 -102623004 - L2 LINE L2 -29 3284 3235 387 341 84 12 chr1 179571297 179571464 -102622200 + MIR SINE MIR 28 206 -56 413 174 0 0 chr1 179571611 179571697 -102621967 - L1MA9 LINE L1 -6 6306 6221 387 238 21 31 chr1 179571702 179571808 -102621856 + MER57A LTR ERV1 42 104 -299 1827 139 66 14 chr1 179571808 179572096 -102621568 + AluSx SINE Alu 1 303 -9 387 238 21 31 chr1 179572096 179572208 -102621456 + MER57A LTR ERV1 104 216 -187 482 145 16 16 chr1 179572338 179572449 -102621215 + MER57A LTR ERV1 316 403 0 627 263 30 36 chr1 179572452 179572712 -102620952 + MER57A-int LTR ERV1 3 299 -7238 390 162 115 51 chr1 179573094 179573296 -102620368 + MER31-int LTR ERV1 1027 2969 -3362 * 2658 213 99 90 chr1 179573275 179574824 -102618840 + MER31-int LTR ERV1 2404 5821 -1494 597 185 0 0 chr1 179574840 179574932 -102618732 + AluJo SINE Alu 1 92 -220 410 188 7 2 chr1 179574947 179575068 -102618596 - LTR23-int LTR ERV1 -1824 3056 2356 996 191 4 57 chr1 179575109 179575339 -102618325 + AluJo SINE Alu 95 312 0 1043 259 11 69 chr1 179575667 179576045 -102617619 + MER31-int LTR ERV1 5825 6180 -1357 321 313 88 60 chr1 179580690 179580939 -102612725 + L1M2 LINE L1 422 677 -6172 486 354 24 5 chr1 179581296 179581508 -102612156 + MER31-int LTR ERV1 6794 7009 -528 493 193 17 33 chr1 179581601 179581763 -102611901 - L1MA9 LINE L1 -129 6042 5877 380 309 46 55 chr1 179582668 179582975 -102610689 - L2 LINE L2 -204 3068 2767 215 359 26 0 chr1 179583491 179583569 -102610095 - MIR3 SINE MIR -8 200 121 237 269 96 0 chr1 179583587 179583691 -102609973 - L1ME4a LINE L1 -11 6110 5997 471 315 99 9 chr1 179586523 179586745 -102606919 - MIR SINE MIR -18 244 3 418 281 124 20 chr1 179587450 179587699 -102605965 - MER102a DNA MER1_type -21 309 35 1538 200 11 0 chr1 179588442 179588712 -102604952 + AluJo SINE Alu 19 291 -21 774 184 65 43 chr1 179588730 179588915 -102604749 + MER5A DNA MER1_type 1 189 0 188 191 85 0 chr1 179589097 179589144 -102604520 + MIR SINE MIR 111 161 -101 530 231 90 6 chr1 179589558 179589714 -102603950 + LTR41 LTR ERVL 1 169 -604 374 251 103 23 chr1 179589972 179590217 -102603447 + LTR41 LTR ERVL 514 795 0 2294 96 0 40 chr1 179590402 179590725 -102602939 - AluSg SINE Alu 0 310 1 2663 136 0 0 chr1 179590725 179591131 -102602533 - L1PA16 LINE L1 -11 6155 5750 252 299 26 32 chr1 179591366 179591520 -102602144 - L1MEc LINE L1 -6134 262 110 674 180 0 0 chr1 179591569 179591680 -102601984 - FRAM SINE Alu -21 155 45 534 322 50 52 chr1 179593020 179593439 -102600225 + L1 LINE L1 4180 4597 -1549 239 239 0 33 chr1 179593511 179593603 -102600061 + L1 LINE L1 4746 4834 -1312 312 305 152 6 chr1 179593939 179594103 -102599561 + L1MC/D LINE L1 5284 5471 -2337 535 263 121 78 chr1 179594329 179594816 -102598848 - MLT1J LTR MaLR -3 508 1 620 199 81 8 chr1 179594902 179595138 -102598526 + HsTC2 DNA Tc2 1645 1897 -1 9158 33 2 1 chr1 179595260 179596330 -102597334 + MER11C LTR ERVK 1 1071 0 2017 125 0 33 chr1 179596363 179596668 -102596996 - AluSx SINE Alu -17 295 1 264 217 0 65 chr1 179597152 179597228 -102596436 + L1M4 LINE L1 3375 3446 -2700 2344 108 0 0 chr1 179597228 179597533 -102596131 + AluSg SINE Alu 1 305 -5 264 217 0 65 chr1 179597533 179597548 -102596116 + L1M4 LINE L1 3446 3460 -2686 286 259 0 35 chr1 179597627 179597743 -102595921 - L1M4 LINE L1 -3009 3137 3026 1401 141 31 4 chr1 179597961 179598216 -102595448 - L1MA4 LINE L1 -12 6288 6027 1622 113 8 24 chr1 179598225 179598603 -102595061 - L1M2 LINE L1 -509 6484 5987 183 80 0 0 chr1 179598695 179598720 -102594944 + (CCCCAG)n Simple_repeat Simple_repeat 2 26 0 1900 154 26 8 chr1 179599203 179599585 -102594079 - L1M2 LINE L1 -847 6001 5613 5444 153 19 10 chr1 179600415 179601494 -102592170 - L1M2 LINE L1 -1226 5622 4534 2445 42 0 60 chr1 179602081 179602412 -102591252 + AluY SINE Alu 1 311 0 2268 97 10 3 chr1 179602567 179602875 -102590789 + AluSq SINE Alu 1 310 -3 698 276 92 77 chr1 179603167 179604129 -102589535 + L1MEc LINE L1 826 1801 -4595 * 2645 255 43 76 chr1 179604128 179606042 -102587622 + L1MEc LINE L1 2456 4305 -1910 434 305 58 18 chr1 179607322 179607548 -102586116 + LTR16C LTR ERVL 156 390 -101 244 215 195 40 chr1 179607696 179607845 -102585819 - L1ME3 LINE L1 -109 6053 5882 297 109 219 0 chr1 179607854 179607918 -102585746 - AluSc SINE Alu 0 299 222 809 98 0 0 chr1 179607921 179608023 -102585641 - AluJb SINE Alu -124 188 87 1669 245 67 17 chr1 179608027 179608628 -102585036 - L1ME3 LINE L1 -278 5884 5254 483 276 104 0 chr1 179608846 179608980 -102584684 - MER5A DNA MER1_type 0 189 42 5126 197 16 53 chr1 179608984 179609282 -102584382 - L1M2 LINE L1 -2560 4288 3980 2102 108 3 7 chr1 179609282 179609579 -102584085 - AluSq SINE Alu -17 296 1 2113 139 0 0 chr1 179609581 179609875 -102583789 - AluSx SINE Alu -18 294 1 5126 197 16 53 chr1 179609875 179610272 -102583392 - L1M2 LINE L1 -2869 3979 3569 2542 48 0 10 chr1 179610272 179610583 -102583081 - AluY SINE Alu -3 308 1 5126 197 16 53 chr1 179610583 179611455 -102582209 - L1M2 LINE L1 -3279 3569 2779 1003 330 64 34 chr1 179611433 179612217 -102581447 - L1MEc LINE L1 -5555 841 35 * 202 231 0 39 chr1 179612536 179612588 -102581076 + GA-rich Low_complexity Low_complexity 3 52 0 6817 169 6 11 chr1 179612848 179615165 -102578499 - L1PB2 LINE L1 0 6151 3847 334 208 13 13 chr1 179615251 179615328 -102578336 + MER52A LTR ERV1 1 77 -1678 6953 184 72 52 chr1 179615714 179617237 -102576427 + MER52A LTR ERV1 204 1755 0 677 281 98 21 chr1 179617729 179618014 -102575650 + Charlie2 DNA MER1_type 21 327 -2535 600 258 32 14 chr1 179618014 179618231 -102575433 + Charlie2 DNA MER1_type 1856 2076 -786 274 229 66 0 chr1 179618362 179618423 -102575241 - MER96 DNA MER1_type? -4 171 107 239 265 60 0 chr1 179618586 179618669 -102574995 - MIR SINE MIR -56 206 119 22 0 0 0 chr1 179618734 179618756 -102574908 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 179618779 179618803 -102574861 + AT_rich Low_complexity Low_complexity 1 24 0 44341 46 2 1 chr1 179618803 179624952 -102568712 - L1PA4 LINE L1 0 6155 1 1630 229 22 26 chr1 179624958 179625448 -102568216 + Charlie2 DNA MER1_type 2068 2555 -307 2219 151 22 40 chr1 179625450 179625821 -102567843 + THE1B LTR MaLR 1 364 0 280 57 0 0 chr1 179625821 179625856 -102567808 + THE1B-int LTR MaLR 1 35 -1545 379 294 47 0 chr1 179625856 179626026 -102567638 + Charlie2 DNA MER1_type 1986 2163 -699 11279 100 21 2 chr1 179626026 179627530 -102566134 + THE1B-int LTR MaLR 48 1580 0 2062 128 90 29 chr1 179627530 179627873 -102565791 + THE1B LTR MaLR 1 364 0 894 236 49 4 chr1 179627873 179628140 -102565524 + Charlie2 DNA MER1_type 2553 2831 -31 618 226 144 29 chr1 179628329 179628572 -102565092 - Charlie2b DNA MER1_type -2118 664 394 485 225 67 0 chr1 179628686 179628806 -102564858 - L1MA10 LINE L1 -26 6308 6181 861 231 35 61 chr1 179628811 179629263 -102564401 - L1MEc LINE L1 -3694 2521 2121 867 238 65 0 chr1 179629277 179629462 -102564202 - AluJb SINE Alu -115 197 1 3862 183 58 19 chr1 179629490 179630216 -102563448 + L1MA3 LINE L1 16 769 -6796 339 246 151 67 chr1 179630221 179630400 -102563264 + LTR4 LTR ERV1 7 200 -396 745 263 20 28 chr1 179630615 179630862 -102562802 + LTR4 LTR ERV1 352 596 0 18499 157 21 14 chr1 179630862 179632488 -102561176 + L1MA3 LINE L1 756 2369 -5196 1752 165 0 11 chr1 179632488 179632767 -102560897 - AluJo SINE Alu -36 276 1 18499 157 21 14 chr1 179632767 179635461 -102558203 + L1MA3 LINE L1 2369 5118 -2447 279 0 0 0 chr1 179635461 179635492 -102558172 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 18499 157 21 14 chr1 179635492 179636128 -102557536 + L1MA3 LINE L1 5118 5748 -1817 8546 49 0 7 chr1 179636125 179637189 -102556475 - L1P LINE L1 -3813 2333 1277 * 7300 31 5 0 chr1 179637183 179638062 -102555602 + L1P LINE L1 2342 3224 -2922 * 15610 40 1 7 chr1 179638059 179638311 -102555353 + L1P LINE L1 3506 3758 -2388 2698 36 0 0 chr1 179638311 179638616 -102555048 + AluY SINE Alu 1 305 -6 15610 40 1 7 chr1 179638616 179640267 -102553397 + L1P LINE L1 3758 5397 -749 37376 41 24 1 chr1 179640271 179645663 -102548001 + L1PA3 LINE L1 638 6155 0 7101 138 17 11 chr1 179645654 179647627 -102546037 + L1MA3 LINE L1 5731 7716 -8 * 597 196 17 31 chr1 179648046 179648313 -102545351 + MLT1B LTR MaLR 1 390 0 1464 284 136 38 chr1 179649245 179649873 -102543791 - L1MEd LINE L1 -4863 1256 691 1920 139 0 0 chr1 179649873 179650182 -102543482 - AluSx SINE Alu 0 310 2 1464 284 136 38 chr1 179650182 179650691 -102542973 - L1MEd LINE L1 -5428 691 6 256 247 50 57 chr1 179650956 179651101 -102542563 - MIR3 SINE MIR -32 176 35 1769 253 95 98 chr1 179652192 179652237 -102541427 - MER45C DNA AcHobo -635 946 902 2385 148 22 3 chr1 179652237 179652595 -102541069 - MLT1A1 LTR MaLR 0 365 1 1769 253 95 98 chr1 179652595 179653422 -102540242 - MER45C DNA AcHobo -679 902 77 690 248 153 49 chr1 179653916 179653929 -102539735 - L1MCc LINE L1 -5190 1233 1223 2495 161 35 9 chr1 179653929 179654352 -102539312 - Tigger2a DNA MER2_type 0 434 1 690 248 153 49 chr1 179654352 179654725 -102538939 - L1MCc LINE L1 -5200 1223 807 1898 104 97 0 chr1 179654862 179655130 -102538534 - AluSg SINE Alu -16 294 1 730 270 108 29 chr1 179655194 179655575 -102538089 - L1MCc LINE L1 -5927 496 86 1769 147 34 0 chr1 179655648 179655942 -102537722 + AluSx SINE Alu 23 312 0 888 204 0 0 chr1 179655952 179656109 -102537555 + FRAM SINE Alu 1 157 -19 363 225 42 0 chr1 179656593 179656664 -102537000 - L2 LINE L2 0 3272 3199 228 351 67 15 chr1 179656840 179656974 -102536690 + L2 LINE L2 3132 3272 0 414 0 0 0 chr1 179657033 179657079 -102536585 + (T)n Simple_repeat Simple_repeat 1 46 0 396 0 0 0 chr1 179657792 179657836 -102535828 + (TG)n Simple_repeat Simple_repeat 1 44 0 1654 175 10 32 chr1 179659389 179659698 -102533966 + AluJo SINE Alu 1 302 -10 200 297 0 45 chr1 179660533 179660644 -102533020 + CT-rich Low_complexity Low_complexity 1 106 0 223 325 26 26 chr1 179660957 179661071 -102532593 + L2 LINE L2 2978 3091 -181 301 292 11 0 chr1 179661524 179661613 -102532051 + MER5A DNA MER1_type 17 106 -83 909 229 9 33 chr1 179661797 179662011 -102531653 + MER82 DNA MER2_type 8 216 -437 444 14 29 29 chr1 179662282 179662352 -102531312 + (TTTA)n Simple_repeat Simple_repeat 4 73 0 1618 258 0 0 chr1 179662352 179662720 -102530944 + MER82 DNA MER2_type 285 652 -1 293 260 10 10 chr1 179663565 179663665 -102529999 + MLT1L LTR MaLR 512 611 -4 1218 211 4 8 chr1 179663792 179664029 -102529635 - MER46A DNA MER2_type 0 236 1 1790 180 40 0 chr1 179664274 179664597 -102529067 - LOR1a LTR ERV1 0 497 162 16426 115 26 17 chr1 179664610 179665989 -102527675 + LOR1-int LTR ERV1 4 1369 -6751 2566 43 0 0 chr1 179665989 179666289 -102527375 - AluY SINE Alu -11 300 1 16426 115 26 17 chr1 179666289 179666819 -102526845 + LOR1-int LTR ERV1 1369 1893 -6227 4037 116 8 15 chr1 179666819 179667467 -102526197 - L1PA14 LINE L1 0 6161 5519 16426 115 26 17 chr1 179667467 179668347 -102525317 + LOR1-int LTR ERV1 1893 2819 -5301 1960 132 17 3 chr1 179668353 179668640 -102525024 + AluSx SINE Alu 1 291 -21 2154 105 7 13 chr1 179669920 179670224 -102523440 - AluSq SINE Alu -11 302 1 3856 18 0 0 chr1 179670629 179671396 -102522268 - L1P1 LINE L1 -481 5674 4908 * 4126 0 0 0 chr1 179671395 179671872 -102521792 + L1HS LINE L1 5679 6155 0 192 40 0 0 chr1 179671874 179671899 -102521765 + (TAAAAA)n Simple_repeat Simple_repeat 3 27 0 189 0 0 0 chr1 179671914 179671935 -102521729 + (A)n Simple_repeat Simple_repeat 1 21 0 7152 163 8 9 chr1 179672154 179674661 -102519003 + L1PB2 LINE L1 3650 6151 0 778 251 80 118 chr1 179675926 179676387 -102517277 + MLT1J LTR MaLR 1 441 -70 2188 127 0 7 chr1 179676387 179676695 -102516969 - AluSx SINE Alu -6 306 1 778 251 80 118 chr1 179676695 179676758 -102516906 + MLT1J LTR MaLR 441 505 -6 906 319 66 8 chr1 179678017 179678412 -102515252 - LTR16A LTR ERVL 0 450 33 228 67 0 0 chr1 179678661 179678691 -102514973 + (TTCTCC)n Simple_repeat Simple_repeat 1 30 0 2017 120 13 7 chr1 179678691 179678990 -102514674 - AluSc SINE Alu -8 301 1 2241 69 0 7 chr1 179679333 179679624 -102514040 - L1PA6 LINE L1 -2 6152 5864 30 0 0 0 chr1 179680128 179680158 -102513506 + AT_rich Low_complexity Low_complexity 1 30 0 5266 32 8 0 chr1 179680158 179680786 -102512878 - L1PA4 LINE L1 -3 6152 5520 17424 81 4 0 chr1 179680786 179683201 -102510463 - L1P LINE L1 -3720 2426 2 5330 73 4 0 chr1 179683992 179684680 -102508984 - L1PA7 LINE L1 0 6154 5464 7009 104 4 11 chr1 179684680 179685904 -102507760 - L1P3 LINE L1 -4500 1961 746 4060 207 60 24 chr1 179686434 179687477 -102506187 - Tigger6a DNA MER2_type -1 1082 2 307 336 55 20 chr1 179687561 179687707 -102505957 - L1MEd LINE L1 -5503 616 466 401 319 58 26 chr1 179687893 179688084 -102505580 - L1MEd LINE L1 -5869 250 54 2234 116 0 0 chr1 179688084 179688378 -102505286 - AluSg SINE Alu -6 304 11 196 263 26 53 chr1 179688632 179688708 -102504956 - MIR3 SINE MIR -9 199 126 911 195 20 172 chr1 179690083 179690287 -102503377 - MLT1A2 LTR MaLR 0 374 271 180 0 0 0 chr1 179690287 179690307 -102503357 + (CA)n Simple_repeat Simple_repeat 1 20 0 911 195 20 172 chr1 179690307 179690543 -102503121 - MLT1A2 LTR MaLR -103 271 1 323 217 87 35 chr1 179690747 179690862 -102502802 - MLT1I LTR MaLR -17 392 272 277 248 35 44 chr1 179690910 179691023 -102502641 - MLT1J2 LTR MaLR -257 193 82 1735 191 3 7 chr1 179691402 179691695 -102501969 - AluJb SINE Alu -19 293 2 190 297 62 0 chr1 179696667 179696731 -102496933 + L2 LINE L2 2999 3066 -206 194 282 100 73 chr1 179697331 179697441 -102496223 - L2 LINE L2 0 3313 3201 22 35 0 0 chr1 179697492 179697521 -102496143 + AT_rich Low_complexity Low_complexity 1 29 0 719 238 85 35 chr1 179697523 179697889 -102495775 - L1ME1 LINE L1 -4 6162 5779 21 36 0 0 chr1 179698106 179698134 -102495530 + AT_rich Low_complexity Low_complexity 1 28 0 4327 250 23 25 chr1 179698145 179700668 -102492996 + L1PA15 LINE L1 1 2860 -3937 1699 178 7 23 chr1 179700668 179700971 -102492693 + AluJb SINE Alu 13 310 -2 4327 250 23 25 chr1 179700971 179701456 -102492208 + L1PA15 LINE L1 2860 3345 -3452 * 21845 77 15 8 chr1 179701455 179703764 -102489900 - L1P LINE L1 -1428 4718 2376 2212 123 0 0 chr1 179703764 179704056 -102489608 - AluY SINE Alu -14 297 6 21845 77 15 8 chr1 179704056 179704966 -102488698 - L1P LINE L1 -3770 2376 1474 459 156 0 0 chr1 179704966 179705043 -102488621 - L1P LINE L1 -6059 87 11 6830 240 19 6 chr1 179705058 179706956 -102486708 + L1PA15 LINE L1 3401 5322 -1475 27709 69 3 1 chr1 179706958 179710759 -102482905 + L1PA4 LINE L1 1 3810 -2336 12204 34 1 0 chr1 179710761 179712998 -102480666 + L1PA4 LINE L1 3913 6155 0 3084 166 13 2 chr1 179712992 179713937 -102479727 + L1PA15 LINE L1 5312 6263 -553 759 145 7 7 chr1 179713938 179714076 -102479588 + L1PA15 LINE L1 6675 6812 -4 204 217 50 0 chr1 179714154 179714214 -102479450 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 9888 183 31 17 chr1 179714220 179715140 -102478524 - L1M2 LINE L1 -745 5583 4677 2001 160 42 25 chr1 179715140 179715497 -102478167 + THE1B LTR MaLR 2 364 0 9888 183 31 17 chr1 179715497 179716306 -102477358 - L1M2 LINE L1 -1651 4677 3880 1913 164 3 0 chr1 179716306 179716605 -102477059 - AluJb SINE Alu -4 308 9 9888 183 31 17 chr1 179716605 179717089 -102476575 - L1M2 LINE L1 -2448 3880 3394 1996 132 14 0 chr1 179717089 179717384 -102476280 - AluSx SINE Alu -13 299 1 9888 183 31 17 chr1 179717384 179717659 -102476005 - L1M2 LINE L1 -2934 3394 3124 40019 40 22 2 chr1 179717663 179723689 -102469975 - L1PA3 LINE L1 -3 6152 1 4173 248 34 35 chr1 179723690 179724762 -102468902 - L1M2 LINE L1 -3173 3155 2083 1547 97 19 0 chr1 179724762 179724978 -102468686 - L1PA11 LINE L1 -8 6166 5947 4173 248 34 35 chr1 179724978 179725250 -102468414 - L1M2 LINE L1 -4245 2083 1812 1242 213 3 97 chr1 179725250 179725570 -102468094 - AluJb SINE Alu -12 290 1 4173 248 34 35 chr1 179725570 179726854 -102466810 - L1M2 LINE L1 -4516 1812 535 646 375 14 16 chr1 179727003 179727443 -102466221 - L1M3a LINE L1 -5506 449 11 310 324 55 51 chr1 179727462 179727715 -102465949 + L1MC4a LINE L1 6414 6667 -1141 584 254 82 77 chr1 179727732 179728161 -102465503 + L1MC5 LINE L1 6718 7148 -813 758 219 76 76 chr1 179728198 179728605 -102465059 + Charlie1b DNA MER1_type 7 413 -110 294 29 0 0 chr1 179728641 179728676 -102464988 + (CA)n Simple_repeat Simple_repeat 2 36 0 626 95 19 0 chr1 179728719 179728824 -102464840 - L1MB4 LINE L1 0 6180 6074 1083 246 28 34 chr1 179728930 179728964 -102464700 + L1MC5 LINE L1 7306 7339 -622 2459 62 0 10 chr1 179728964 179729272 -102464392 - AluY SINE Alu -6 305 1 1083 246 28 34 chr1 179729272 179729708 -102463956 + L1MC5 LINE L1 7339 7773 -188 2163 119 0 0 chr1 179729787 179730097 -102463567 - AluSx SINE Alu 0 310 1 1164 151 5 19 chr1 179730123 179730335 -102463329 - LTR12 LTR ERV1 -505 209 1 216 266 63 13 chr1 179730734 179730813 -102462851 - L2 LINE L2 -221 3051 2969 232 185 31 31 chr1 179730966 179731031 -102462633 + HsTC2 DNA Tc2 3 67 -1831 26 0 0 0 chr1 179731088 179731114 -102462550 + AT_rich Low_complexity Low_complexity 1 26 0 2472 174 40 2 chr1 179731292 179731763 -102461901 + L1MB2 LINE L1 5676 6164 -7 354 91 0 0 chr1 179734979 179735034 -102458630 + (TG)n Simple_repeat Simple_repeat 2 56 0 2157 123 0 3 chr1 179736166 179736459 -102457205 - AluSc SINE Alu -17 292 1 2379 133 24 38 chr1 179736656 179737107 -102456557 - MER65A LTR ERV1 0 445 1 550 159 0 80 chr1 179737666 179737804 -102455860 + L1MA9 LINE L1 5906 6032 -280 3911 196 8 7 chr1 179737812 179738543 -102455121 - MER44D DNA MER2_type -1 604 1 271 304 63 5 chr1 179738562 179738769 -102454895 - L1M4 LINE L1 -1832 4314 4096 2068 136 0 7 chr1 179738773 179739067 -102454597 - AluSx SINE Alu -20 292 1 39158 72 1 0 chr1 179739098 179745237 -102448427 + L1PA4 LINE L1 11 6154 -1 22 0 0 0 chr1 179745447 179745469 -102448195 + AT_rich Low_complexity Low_complexity 1 22 0 2014 132 0 20 chr1 179745489 179745792 -102447872 - AluSx SINE Alu -15 297 1 4248 221 10 5 chr1 179745793 179746854 -102446810 - L1 LINE L1 -1125 5021 3955 885 224 15 15 chr1 179746851 179747119 -102446545 - L1 LINE L1 -2619 3527 3260 * 6223 89 52 0 chr1 179747120 179748033 -102445631 - L1PA13 LINE L1 -2 6161 5241 448 288 58 10 chr1 179748033 179748238 -102445426 - L1PA13 LINE L1 -4956 1831 1617 470 46 15 0 chr1 179748243 179748308 -102445356 + (TA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr1 179748307 179748338 -102445326 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 1658 172 65 73 chr1 179748662 179748731 -102444933 - L1 LINE L1 -1635 4511 4443 2327 87 0 0 chr1 179748731 179749017 -102444647 - AluSc SINE Alu -17 292 7 1658 172 65 73 chr1 179749017 179749470 -102444194 - L1 LINE L1 -1703 4443 3993 4234 161 48 26 chr1 179749476 179749621 -102444043 + L1MA9 LINE L1 5088 5228 -1084 2261 102 7 3 chr1 179749621 179749916 -102443748 + AluSq SINE Alu 2 297 -16 4234 161 48 26 chr1 179749916 179749991 -102443673 + L1MA9 LINE L1 5228 5300 -1012 234 0 0 0 chr1 179749991 179750017 -102443647 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 4234 161 48 26 chr1 179750017 179750848 -102442816 + L1MA9 LINE L1 5300 6155 -157 1810 73 0 81 chr1 179750864 179751125 -102442539 + AluY SINE Alu 1 240 -71 4298 119 73 55 chr1 179751125 179752550 -102441114 - pTR5 LTR ERV1 0 2606 1524 470 76 0 0 chr1 179752550 179752616 -102441048 + AluY SINE Alu 239 304 -7 646 126 6 144 chr1 179752617 179752731 -102440933 + L1MA9 LINE L1 6168 6253 -59 325 173 40 0 chr1 179752731 179752806 -102440858 - L1MB3 LINE L1 -7 6176 6099 646 126 6 144 chr1 179752806 179752858 -102440806 + L1MA9 LINE L1 6253 6311 -1 21 36 0 0 chr1 179753027 179753055 -102440609 + AT_rich Low_complexity Low_complexity 1 28 0 2273 93 3 3 chr1 179753280 179753581 -102440083 - AluY SINE Alu -10 301 1 27 0 0 0 chr1 179753635 179753662 -102440002 + AT_rich Low_complexity Low_complexity 1 27 0 1735 164 54 4 chr1 179753929 179754209 -102439455 - AluSg SINE Alu -16 294 1 1928 134 0 29 chr1 179754227 179754541 -102439123 + AluSg SINE Alu 1 305 -5 251 213 0 0 chr1 179754876 179754937 -102438727 + T-rich Low_complexity Low_complexity 1 61 0 5739 21 1 0 chr1 179754938 179755599 -102438065 - L1PA4 LINE L1 0 6155 5494 205 246 0 46 chr1 179759636 179759701 -102433963 + CT-rich Low_complexity Low_complexity 2 63 0 805 274 6 0 chr1 179760322 179760497 -102433167 + MER45A DNA AcHobo 1 176 -2 2169 93 3 7 chr1 179761162 179761462 -102432202 - AluY SINE Alu -12 299 1 508 244 273 10 chr1 179763097 179763302 -102430362 - MIR SINE MIR 0 262 4 * 680 322 130 16 chr1 179763302 179763824 -102429840 - L2 LINE L2 -8 3305 2735 857 92 53 0 chr1 179763833 179763964 -102429700 - MER41-int LTR ERV1 -1232 4714 4577 7550 28 12 0 chr1 179763988 179765157 -102428507 - L1PA4 LINE L1 -3 6152 4979 1328 226 60 22 chr1 179765208 179765576 -102428088 + L1MA10 LINE L1 5953 6334 0 651 179 9 0 chr1 179766750 179766862 -102426802 - MER70B LTR ERVL -11 567 455 2981 214 9 46 chr1 179768632 179769113 -102424551 - MER70-int LTR ERVL -1443 3580 3130 2552 120 0 8 chr1 179769113 179769480 -102424184 + THE1B LTR MaLR 1 364 0 2981 214 9 46 chr1 179769480 179769675 -102423989 - MER70-int LTR ERVL -1893 3130 2929 900 289 20 14 chr1 179769726 179770044 -102423620 - MER70-int LTR ERVL -1656 3874 2716 650 205 16 0 chr1 179770281 179770403 -102423261 - MER70-int LTR ERVL -2304 2719 2596 4714 226 36 10 chr1 179770403 179771416 -102422248 - MLT1A1-int LTR MaLR -695 1040 1 1029 233 38 0 chr1 179771416 179771626 -102422038 - MLT1A1 LTR MaLR 0 365 148 996 212 141 7 chr1 179771908 179772191 -102421473 + MER5C DNA MER1_type 2 322 -2 539 240 23 0 chr1 179772962 179773091 -102420573 + FLAM_C SINE Alu 1 132 -1 568 282 6 0 chr1 179773893 179774056 -102419608 + L1MA4A LINE L1 30 193 -7016 234 247 123 14 chr1 179774062 179774135 -102419529 + L1MA4A LINE L1 1004 1084 -6125 4668 229 34 8 chr1 179774435 179775464 -102418200 + L1MA4A LINE L1 1439 2499 -4710 2541 124 3 3 chr1 179775464 179775828 -102417836 - THE1B LTR MaLR 0 364 1 4668 229 34 8 chr1 179775828 179775870 -102417794 + L1MA4A LINE L1 2499 2538 -4671 24 32 0 0 chr1 179775870 179775901 -102417763 + AT_rich Low_complexity Low_complexity 1 31 0 745 246 33 24 chr1 179775915 179776126 -102417538 + L1MA4A LINE L1 2524 2736 -4473 5248 99 96 111 chr1 179776136 179777720 -102415944 - pTR5 LTR ERV1 0 2438 743 12395 200 30 25 chr1 179777723 179782132 -102411532 + L1MA4A LINE L1 2743 7171 -194 487 223 75 11 chr1 179782191 179782379 -102411285 + L1MA4A LINE L1 2962 3161 -2985 * 2144 158 9 41 chr1 179782373 179782809 -102410855 + L1MA4A LINE L1 5338 5759 -544 410 147 0 0 chr1 179782807 179782875 -102410789 + L1MA4A LINE L1 6213 6280 -23 * 2138 261 74 17 chr1 179783587 179784537 -102409127 + L1ME1 LINE L1 2607 3610 -2536 1931 224 53 64 chr1 179784545 179785019 -102408645 + L1ME1 LINE L1 4987 5465 -701 1338 233 28 25 chr1 179785019 179785379 -102408285 - MLT1A1 LTR MaLR 0 365 5 1931 224 53 64 chr1 179785379 179786098 -102407566 + L1ME1 LINE L1 5465 6144 -22 22 0 0 0 chr1 179786348 179786370 -102407294 + AT_rich Low_complexity Low_complexity 1 22 0 952 304 58 42 chr1 179786938 179787385 -102406279 - MLT1J LTR MaLR -54 457 4 559 326 68 47 chr1 179787417 179787890 -102405774 + L1M4 LINE L1 3951 4433 -1713 6975 42 19 0 chr1 179788363 179789424 -102404240 - L1PA4 LINE L1 0 6155 5085 * 12905 32 14 1 chr1 179789423 179791764 -102401900 + L1PA4 LINE L1 3807 6152 -3 4279 179 76 17 chr1 179791816 179792820 -102400844 - Charlie1 DNA MER1_type -104 2657 1595 1310 171 61 0 chr1 179792837 179793082 -102400582 - MER2 DNA MER2_type -85 260 1 345 200 188 35 chr1 179793143 179793313 -102400351 + LTR40b LTR ERVL 1 196 -266 1535 213 40 45 chr1 179793313 179793863 -102399801 - MER67C LTR ERV1 0 514 1 775 258 83 20 chr1 179793863 179794112 -102399552 + LTR40b LTR ERVL 194 458 -4 1177 280 83 32 chr1 179794580 179795052 -102398612 - L2 LINE L2 0 3313 2818 268 196 0 0 chr1 179795052 179795103 -102398561 - L2 LINE L2 -656 2658 2608 520 346 47 13 chr1 179796158 179796456 -102397208 - HERVL LTR ERVL -1438 4216 3909 290 270 26 26 chr1 179796657 179796772 -102396892 - HERVL LTR ERVL -2056 3708 3594 2466 87 14 0 chr1 179797018 179797364 -102396300 - L1PB1 LINE L1 -2 6149 5799 26 64 0 0 chr1 179797521 179797568 -102396096 + AT_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr1 179797611 179797654 -102396010 + AT_rich Low_complexity Low_complexity 1 43 0 1885 53 9 0 chr1 179797871 179798099 -102395565 + AluY SINE Alu 76 305 -6 219 139 0 0 chr1 179798099 179798135 -102395529 + (TA)n Simple_repeat Simple_repeat 1 36 0 371 154 0 0 chr1 179798482 179798547 -102395117 - L1MA6 LINE L1 -26 6274 6210 1953 138 0 0 chr1 179799918 179800209 -102393455 + AluSq SINE Alu 1 291 -22 21 0 0 0 chr1 179801503 179801524 -102392140 + AT_rich Low_complexity Low_complexity 1 21 0 578 278 134 10 chr1 179802898 179803107 -102390557 + MIR SINE MIR 2 236 -26 513 146 0 0 chr1 179803340 179803436 -102390228 - L1MA6 LINE L1 -1 6299 6204 219 311 82 0 chr1 179804378 179804439 -102389225 - MIR3 SINE MIR -133 75 10 27 0 0 0 chr1 179805327 179805354 -102388310 + AT_rich Low_complexity Low_complexity 1 27 0 237 163 0 0 chr1 179805467 179805516 -102388148 + (TG)n Simple_repeat Simple_repeat 1 49 0 1499 240 79 59 chr1 179807086 179807631 -102386033 + MER74A LTR ERVL 3 558 0 635 173 0 0 chr1 179807633 179807743 -102385921 + L1MC2 LINE L1 4690 4799 -1347 * 2058 202 61 12 chr1 179807742 179808236 -102385428 + L1MC2 LINE L1 5814 6331 -13 387 340 138 4 chr1 179808259 179808527 -102385137 + L1ME3A LINE L1 5853 6156 -14 872 338 55 52 chr1 179808978 179810092 -102383572 - HERVL LTR ERVL -3590 2064 975 194 0 0 37 chr1 179810092 179810119 -102383545 + (TTA)n Simple_repeat Simple_repeat 2 27 0 872 338 55 52 chr1 179810119 179810222 -102383442 - HERVL LTR ERVL -4679 975 874 1778 101 0 8 chr1 179810760 179810998 -102382666 + AluSg/x SINE Alu 68 303 -9 351 286 0 0 chr1 179811272 179811349 -102382315 - LTR33 LTR ERVL -419 102 26 343 351 57 41 chr1 179811463 179811708 -102381956 + MLT1I LTR MaLR 159 407 -2 329 190 177 38 chr1 179811978 179812136 -102381528 - L1M4 LINE L1 -3128 3018 2839 2929 60 0 0 chr1 179812137 179812506 -102381158 - L1PA7 LINE L1 0 6154 5786 340 237 52 41 chr1 179812539 179812636 -102381028 - L2 LINE L2 0 3313 3216 479 299 113 23 chr1 179812747 179813279 -102380385 + L1M4 LINE L1 3153 3732 -2414 2518 166 84 0 chr1 179813297 179813750 -102379914 + MER6 DNA MER2_type 189 679 -186 405 283 26 18 chr1 179814253 179814366 -102379298 + MIR SINE MIR 34 147 -115 354 295 103 44 chr1 179815550 179815676 -102377988 - L1ME4a LINE L1 -37 6084 5967 1150 226 128 56 chr1 179815676 179816198 -102377466 + MER68 LTR ERV1 1 560 -2 354 295 103 44 chr1 179816198 179816342 -102377322 - L1ME4a LINE L1 -154 5967 5798 402 323 92 48 chr1 179816420 179816757 -102376907 - L1ME4a LINE L1 -441 5680 5329 26 50 0 0 chr1 179816834 179816874 -102376790 + AT_rich Low_complexity Low_complexity 1 40 0 334 314 106 35 chr1 179817166 179817478 -102376186 - L1ME4a LINE L1 -1316 4830 4497 23 0 0 0 chr1 179818335 179818358 -102375306 + AT_rich Low_complexity Low_complexity 1 23 0 1492 159 8 30 chr1 179818358 179818622 -102375042 - AluJo SINE Alu -54 258 1 272 256 91 25 chr1 179819579 179819700 -102373964 + LTR33A LTR ERVL 385 513 -10 1253 196 22 0 chr1 179819854 179820084 -102373580 + L1PA16 LINE L1 5908 6142 -24 311 295 45 0 chr1 179821221 179821333 -102372331 + MIR SINE MIR 92 208 -54 1961 140 17 7 chr1 179822615 179822915 -102370749 - AluSx SINE Alu -9 303 1 184 360 27 48 chr1 179825118 179825265 -102368399 + L2 LINE L2 3168 3311 -2 368 328 141 6 chr1 179826421 179826598 -102367066 + MIR SINE MIR 49 249 -13 435 316 31 26 chr1 179827536 179827734 -102365930 - MIR SINE MIR -11 251 49 180 0 0 0 chr1 179827741 179827761 -102365903 + (TG)n Simple_repeat Simple_repeat 1 20 0 339 366 50 0 chr1 179828222 179828383 -102365281 - MIR3 SINE MIR -7 201 33 28 0 0 0 chr1 179828674 179828702 -102364962 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 179828774 179828802 -102364862 + AT_rich Low_complexity Low_complexity 1 28 0 30997 119 8 59 chr1 179830024 179836504 -102357160 - L1PA7 LINE L1 -3 6151 12 534 280 80 15 chr1 179837049 179837249 -102356415 + MLT1K LTR MaLR 374 586 -2 293 319 28 49 chr1 179838595 179838739 -102354925 - L2 LINE L2 -5 3308 3168 930 266 77 16 chr1 179838860 179839338 -102354326 - L1ME3A LINE L1 -9 6161 5611 567 288 73 21 chr1 179839356 179839547 -102354117 + MLT1H LTR MaLR 23 223 -326 800 161 25 6 chr1 179839758 179839919 -102353745 - L1MB2 LINE L1 -10 6161 5998 677 277 105 4 chr1 179840036 179840418 -102353246 - L1ME3A LINE L1 -578 5586 5167 394 138 0 11 chr1 179840404 179840486 -102353178 - L1PB4 LINE L1 -202 5953 5889 * 5195 176 23 14 chr1 179840717 179841840 -102351824 - L1MA9 LINE L1 -10 6302 5169 5552 193 37 23 chr1 179841841 179842196 -102351468 + L1 LINE L1 3957 4305 -1841 2560 136 13 96 chr1 179842196 179842739 -102350925 + L1PA16 LINE L1 5661 6164 -2 5552 193 37 23 chr1 179842739 179843605 -102350059 + L1 LINE L1 4305 5199 -947 2187 119 0 3 chr1 179843605 179843915 -102349749 + AluSq SINE Alu 5 313 0 5552 193 37 23 chr1 179843915 179843933 -102349731 + L1 LINE L1 5199 5215 -931 294 298 76 18 chr1 179844005 179844230 -102349434 - L1M4 LINE L1 -2019 4127 3890 1224 175 84 8 chr1 179844435 179844719 -102348945 - AluJb SINE Alu 0 304 1 293 361 111 9 chr1 179844894 179845002 -102348662 + L2 LINE L2 2955 3073 -199 500 225 25 25 chr1 179845216 179845336 -102348328 - FLAM_A SINE Alu -11 122 3 21 36 0 0 chr1 179845470 179845498 -102348166 + AT_rich Low_complexity Low_complexity 1 28 0 194 296 102 0 chr1 179846301 179846389 -102347275 - MIR SINE MIR 0 262 166 184 243 39 97 chr1 179846676 179846779 -102346885 + L2 LINE L2 3169 3265 -7 317 362 66 10 chr1 179846904 179847100 -102346564 - MIR SINE MIR -50 212 6 230 136 23 0 chr1 179847202 179847246 -102346418 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 352 0 0 chr1 179847401 179847472 -102346192 - MIR3 SINE MIR -42 166 96 232 139 0 23 chr1 179847509 179847552 -102346112 + MER75 DNA T2_type 463 504 0 324 219 0 0 chr1 179847560 179847642 -102346022 + (TA)n Simple_repeat Simple_repeat 1 82 0 207 204 0 0 chr1 179847933 179847977 -102345687 + T-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 179849231 179849252 -102344412 + AT_rich Low_complexity Low_complexity 1 21 0 259 337 33 0 chr1 179849320 179849412 -102344252 - MIR3 SINE MIR -39 169 74 486 339 91 38 chr1 179849879 179850277 -102343387 - L3 LINE CR1 -23 1554 1136 425 256 119 30 chr1 179850563 179850731 -102342933 + MIR SINE MIR 8 190 -72 368 320 60 20 chr1 179850784 179850934 -102342730 - MIR3 SINE MIR -48 160 5 222 339 0 0 chr1 179852206 179852268 -102341396 - L2 LINE L2 -1 3312 3251 218 325 65 32 chr1 179852359 179852482 -102341182 + MER5A DNA MER1_type 63 189 0 932 285 83 15 chr1 179852682 179853581 -102340083 + L1ME1 LINE L1 1900 2812 -3403 465 271 57 19 chr1 179853609 179853819 -102339845 + L1ME1 LINE L1 4145 4362 -1853 7305 200 86 82 chr1 179853831 179856268 -102337396 + L1PB4 LINE L1 2482 5062 -1094 633 217 8 0 chr1 179856268 179856397 -102337267 + AluJb SINE Alu 2 131 -181 7305 200 86 82 chr1 179856397 179857119 -102336545 + L1PB4 LINE L1 5062 5780 -376 1857 203 11 5 chr1 179859274 179859653 -102334011 + L1PB4 LINE L1 5773 6153 -3 2077 249 84 16 chr1 179859689 179860501 -102333163 + L1ME1 LINE L1 4382 5248 -967 355 235 12 1 chr1 179860511 179860616 -102333048 + L1MB7 LINE L1 6072 6177 -1 * 2352 263 48 11 chr1 179860612 179861482 -102332182 + L1ME1 LINE L1 5244 6137 -98 328 291 101 19 chr1 179861496 179861654 -102332010 + L1ME2 LINE L1 5985 6155 -9 256 335 70 25 chr1 179861839 179862081 -102331583 + L1MC/D LINE L1 5385 5637 -484 23 0 0 0 chr1 179862134 179862157 -102331507 + AT_rich Low_complexity Low_complexity 1 23 0 854 330 129 24 chr1 179863074 179863653 -102330011 - ERVL LTR ERVL -530 5234 4595 341 365 52 13 chr1 179863661 179863894 -102329770 - L1M4 LINE L1 -1224 4922 4681 197 388 54 0 chr1 179864090 179864219 -102329445 + MER5A DNA MER1_type 54 189 0 2155 131 0 0 chr1 179865001 179865298 -102328366 + AluSx SINE Alu 1 297 -15 489 62 0 0 chr1 179865370 179865435 -102328229 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 21 0 0 0 chr1 179865714 179865735 -102327929 + AT_rich Low_complexity Low_complexity 1 21 0 1994 164 0 0 chr1 179867641 179867952 -102325712 - AluSx SINE Alu -1 311 1 269 295 156 16 chr1 179869528 179869650 -102324014 - MIR SINE MIR -21 241 103 264 122 0 0 chr1 179869862 179869903 -102323761 + (A)n Simple_repeat Simple_repeat 1 41 0 320 353 74 40 chr1 179870498 179870849 -102322815 - L2 LINE L2 -76 3237 2875 260 80 100 0 chr1 179870864 179870914 -102322750 - L1MA8 LINE L1 -5 6286 6232 * 2822 42 3 0 chr1 179870909 179871266 -102322398 - L1PA4 LINE L1 -921 5225 4868 7530 26 6 0 chr1 179871274 179872168 -102321496 + L1PA4 LINE L1 5254 6152 -3 5228 150 29 20 chr1 179872194 179872675 -102320989 - L1MA8 LINE L1 -47 6244 5769 580 47 0 59 chr1 179872675 179872760 -102320904 + MADE1 DNA Mariner 1 80 0 5228 150 29 20 chr1 179872760 179873415 -102320249 - L1MA8 LINE L1 -522 5769 5101 186 306 121 48 chr1 179873427 179873551 -102320113 + L2 LINE L2 3137 3269 -3 312 318 182 7 chr1 179873578 179873858 -102319806 + L2 LINE L2 2370 2698 -616 * 351 232 10 10 chr1 179873854 179873953 -102319711 + MIR SINE MIR 164 262 0 2378 96 0 0 chr1 179874353 179874665 -102318999 - AluSx SINE Alu 0 312 1 240 291 6 0 chr1 179875948 179876019 -102317645 - MIR SINE MIR -46 162 89 319 322 43 9 chr1 179876377 179876492 -102317172 + L2 LINE L2 3187 3305 -8 725 209 17 3 chr1 179876698 179877050 -102316614 + CT-rich Low_complexity Low_complexity 1 357 0 229 323 23 37 chr1 179877687 179877904 -102315760 + MER112 DNA MER1_type 41 254 -6 549 327 142 0 chr1 179877968 179878194 -102315470 - MIR SINE MIR 0 262 5 25 31 0 0 chr1 179878495 179878527 -102315137 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 179878964 179878993 -102314671 + AT_rich Low_complexity Low_complexity 1 29 0 35 45 0 15 chr1 179879243 179879269 -102314395 + AT_rich Low_complexity Low_complexity 1 26 -40 2448 78 0 3 chr1 179879269 179879577 -102314087 + AluY SINE Alu 1 307 -4 35 45 0 15 chr1 179879577 179879617 -102314047 + AT_rich Low_complexity Low_complexity 26 66 0 1290 111 25 1 chr1 179879768 179880039 -102313625 - L1P4 LINE L1 -695 5471 5195 * 5246 228 37 8 chr1 179880032 179881369 -102312295 + L1P4 LINE L1 3826 5202 -944 707 273 64 3 chr1 179882203 179882529 -102311135 - L1M4 LINE L1 -1462 4684 4339 1008 246 95 40 chr1 179882529 179882875 -102310789 + MLT1D LTR MaLR 1 365 -140 21 57 0 0 chr1 179885954 179885989 -102307675 + AT_rich Low_complexity Low_complexity 1 35 0 779 309 79 30 chr1 179886578 179886908 -102306756 - MLT1G1 LTR MaLR -33 562 217 282 252 22 115 chr1 179886934 179887073 -102306591 - MLT1-int LTR MaLR -217 1154 1029 1702 149 25 6 chr1 179887764 179888087 -102305577 - L1MA5A LINE L1 -5 6292 5964 1124 318 71 22 chr1 179888455 179888918 -102304746 - MLT1G1 LTR MaLR 0 595 110 1743 92 24 4 chr1 179889004 179889255 -102304409 - L1PA10 LINE L1 -6 6162 5907 21 0 0 0 chr1 179890229 179890250 -102303414 + AT_rich Low_complexity Low_complexity 1 21 0 348 43 0 0 chr1 179890980 179891026 -102302638 + (TC)n Simple_repeat Simple_repeat 2 47 0 216 269 0 0 chr1 179891267 179891319 -102302345 + T-rich Low_complexity Low_complexity 3 54 0 2187 177 16 3 chr1 179893533 179893918 -102299746 - MER44D DNA MER2_type -4 601 157 194 337 79 10 chr1 179895248 179895349 -102298315 + MIR SINE MIR 73 180 -82 202 224 59 71 chr1 179895485 179895570 -102298094 - L3 LINE CR1 -441 1136 1053 554 324 229 5 chr1 179896072 179896495 -102297169 - L3 LINE CR1 -4 1573 1056 203 152 0 0 chr1 179896655 179896688 -102296976 + (CATTT)n Simple_repeat Simple_repeat 3 35 0 27 49 0 0 chr1 179897004 179897045 -102296619 + AT_rich Low_complexity Low_complexity 1 41 0 474 193 101 0 chr1 179897540 179897649 -102296015 - MER5C DNA MER1_type 0 324 205 200 420 0 0 chr1 179897771 179897859 -102295805 - MER5C DNA MER1_type -236 88 1 610 286 88 8 chr1 179898167 179898429 -102295235 + HAL1 LINE L1 749 1031 -1476 242 248 168 10 chr1 179898449 179898550 -102295114 - L1ME3A LINE L1 -24 6146 6030 1139 298 62 12 chr1 179898975 179899391 -102294273 - LTR16A LTR ERVL 0 450 14 2082 243 61 30 chr1 179899873 179900646 -102293018 - L1ME2 LINE L1 -2 6162 5366 600 277 29 18 chr1 179900693 179900967 -102292697 - L1ME2 LINE L1 -851 5295 5019 587 190 17 0 chr1 179901014 179901130 -102292534 - L1ME1 LINE L1 -7 6159 6042 22 0 0 0 chr1 179901272 179901294 -102292370 + AT_rich Low_complexity Low_complexity 1 22 0 423 254 41 2 chr1 179901451 179901593 -102292071 + L1M4 LINE L1 4736 4883 -1263 588 227 131 27 chr1 179901620 179901880 -102291784 - L1ME1 LINE L1 -108 6058 5772 * 1317 263 91 12 chr1 179901874 179902705 -102290959 - L1ME1 LINE L1 -594 5570 4721 460 225 104 29 chr1 179902929 179903102 -102290562 - LTR41 LTR ERVL -569 204 19 283 118 39 0 chr1 179903381 179903432 -102290232 - L1MB1 LINE L1 -17 6172 6120 2139 167 83 0 chr1 179903453 179903848 -102289816 - MSTA LTR MaLR 0 428 1 8185 187 29 31 chr1 179903854 179904895 -102288769 - MSTA-int LTR MaLR -6 1645 608 2369 87 10 13 chr1 179904895 179905206 -102288458 - AluY SINE Alu -1 310 1 8185 187 29 31 chr1 179905206 179905811 -102287853 - MSTA-int LTR MaLR -1043 608 3 2293 152 56 22 chr1 179905813 179906227 -102287437 - MSTA LTR MaLR 0 428 1 711 177 28 7 chr1 179906230 179906371 -102287293 - L1MB1 LINE L1 -85 6083 5940 853 198 11 0 chr1 179906380 179906557 -102287107 + L1M3 LINE L1 5627 5805 -529 784 229 37 37 chr1 179906557 179906801 -102286863 + MLT1A1 LTR MaLR 122 365 0 1887 225 172 26 chr1 179906806 179907275 -102286389 - L1 LINE L1 -2812 4753 4354 2733 153 0 14 chr1 179907275 179907707 -102285957 - MSTA LTR MaLR 0 428 3 1887 225 172 26 chr1 179907707 179908045 -102285619 - L1 LINE L1 -3211 4354 3828 * 10237 206 40 5 chr1 179908040 179910714 -102282950 - L1 LINE L1 -4080 3485 22 1153 262 63 15 chr1 179910722 179911457 -102282207 - L1M4 LINE L1 -3729 3836 3074 387 253 0 0 chr1 179911457 179911535 -102282129 + Tigger5 DNA MER2_type 1 78 -2245 394 227 0 0 chr1 179911535 179911610 -102282054 - Tigger5 DNA MER2_type -3 2320 2246 1534 102 5 0 chr1 179911666 179911881 -102281783 - L1PA13 LINE L1 -128 6035 5820 296 244 12 23 chr1 179912058 179912144 -102281520 - L2 LINE L2 -2 3311 3227 1996 153 3 0 chr1 179913883 179914184 -102279480 - AluSq SINE Alu -7 306 5 25 0 0 0 chr1 179915561 179915586 -102278078 + AT_rich Low_complexity Low_complexity 1 25 0 7462 35 0 0 chr1 179915694 179917064 -102276600 + L1PA4 LINE L1 4786 6155 0 368 355 155 41 chr1 179919325 179920123 -102273541 - L3 LINE CR1 -1 1576 688 2093 107 0 0 chr1 179920471 179920751 -102272913 + AluY SINE Alu 1 280 -31 237 33 0 0 chr1 179920754 179920784 -102272880 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2024 95 0 0 chr1 179921461 179921724 -102271940 - AluY SINE Alu -8 303 41 343 322 14 0 chr1 179922467 179922613 -102271051 + L1MEc LINE L1 46 193 -6203 356 307 50 7 chr1 179922746 179922886 -102270778 + MER90 LTR ERV1 4 149 -426 21 0 0 0 chr1 179922923 179922944 -102270720 + AT_rich Low_complexity Low_complexity 1 21 0 183 204 0 0 chr1 179922999 179923043 -102270621 + (TA)n Simple_repeat Simple_repeat 1 44 0 348 322 65 29 chr1 179923177 179923422 -102270242 + L1MEc LINE L1 299 552 -5844 251 273 64 9 chr1 179923423 179923533 -102270131 + L1MEc LINE L1 1020 1135 -5261 1889 317 87 15 chr1 179923806 179925073 -102268591 + L1M3a LINE L1 1538 2581 -4905 1042 271 93 58 chr1 179925067 179925508 -102268156 + L1M3a LINE L1 2533 2957 -4608 * 2080 89 0 26 chr1 179925508 179925821 -102267843 + L1PA8 LINE L1 5868 6172 0 1042 271 93 58 chr1 179925821 179925873 -102267791 + L1M3a LINE L1 2957 3006 -4559 751 188 0 0 chr1 179925873 179926001 -102267663 + FLAM_C SINE Alu 2 129 -4 1042 271 93 58 chr1 179926001 179926595 -102267069 + L1M3a LINE L1 3006 3630 -3935 210 191 0 0 chr1 179927377 179927424 -102266240 + GA-rich Low_complexity Low_complexity 1 47 0 222 233 17 0 chr1 179927461 179927521 -102266143 + GA-rich Low_complexity Low_complexity 1 61 0 2559 263 19 3 chr1 179929490 179930235 -102263429 + L1M3a LINE L1 3621 4377 -3188 8120 227 43 19 chr1 179930235 179932192 -102261472 + L1PA15-16 LINE L1 1326 3235 -3614 2451 75 0 0 chr1 179932192 179932499 -102261165 + AluY SINE Alu 1 307 -4 8120 227 43 19 chr1 179932499 179933357 -102260307 + L1PA15-16 LINE L1 3235 4071 -2778 204 40 0 0 chr1 179933357 179933382 -102260282 + (CCA)n Simple_repeat Simple_repeat 1 25 0 8120 227 43 19 chr1 179933382 179934191 -102259473 + L1PA15-16 LINE L1 4071 5019 -1830 3205 190 20 8 chr1 179934178 179934263 -102259401 - L1P4 LINE L1 -494 5671 5588 * 2399 88 3 0 chr1 179934263 179934568 -102259096 + AluSp SINE Alu 1 306 -7 3205 190 20 8 chr1 179934568 179935514 -102258150 - L1P4 LINE L1 -577 5588 4631 4094 96 3 17 chr1 179935525 179936121 -102257543 - L1PA13 LINE L1 -15 6148 5561 754 303 28 3 chr1 179936128 179936481 -102257183 + L1ME1 LINE L1 1582 1943 -4453 26 0 0 0 chr1 179936502 179936528 -102257136 + AT_rich Low_complexity Low_complexity 1 26 0 487 287 48 21 chr1 179936566 179936754 -102256910 - MER3 DNA MER1_type 0 209 17 2313 237 80 40 chr1 179936930 179937570 -102256094 + L1ME1 LINE L1 5108 5802 -433 2960 125 17 68 chr1 179937570 179938147 -102255517 + LTR14 LTR ERVK 1 548 0 2313 237 80 40 chr1 179938147 179938582 -102255082 + L1ME1 LINE L1 5802 6218 -17 330 301 109 22 chr1 179939079 179939262 -102254402 - L2 LINE L2 -2 3311 3113 227 322 259 0 chr1 179939288 179939431 -102254233 - L2 LINE L2 -248 3065 2886 1532 86 5 0 chr1 179939555 179939775 -102253889 + L1MA1 LINE L1 6082 6302 0 2604 216 72 25 chr1 179940692 179941374 -102252290 - L1MB7 LINE L1 -54 6628 5915 * 7629 238 76 14 chr1 179941371 179941959 -102251705 - L1MB7 LINE L1 -1280 5364 4814 240 86 0 0 chr1 179941959 179941994 -102251670 + (TG)n Simple_repeat Simple_repeat 2 36 0 7629 238 76 14 chr1 179941994 179942231 -102251433 - L1MB7 LINE L1 -1830 4814 4593 321 26 0 0 chr1 179942231 179942269 -102251395 + (TG)n Simple_repeat Simple_repeat 2 39 0 7629 238 76 14 chr1 179942269 179943939 -102249725 - L1MB7 LINE L1 -2051 4593 2712 283 298 24 0 chr1 179943939 179944023 -102249641 - LTR53 LTR ERVL 0 519 434 488 293 66 37 chr1 179944026 179944436 -102249228 - L1MB7 LINE L1 -3950 2696 2275 1839 197 30 93 chr1 179944444 179944671 -102248993 - L1MB7 LINE L1 -4842 1700 1460 2316 136 69 12 chr1 179944671 179945076 -102248588 - MSTA LTR MaLR 0 428 1 1839 197 30 93 chr1 179945076 179945306 -102248358 - L1MB7 LINE L1 -5082 1460 1217 276 30 0 0 chr1 179945306 179945339 -102248325 + (TA)n Simple_repeat Simple_repeat 1 33 0 2129 129 7 0 chr1 179945339 179945634 -102248030 - AluSx SINE Alu -15 297 1 1839 197 30 93 chr1 179945634 179945843 -102247821 - L1MB7 LINE L1 -5323 1219 1074 454 193 11 0 chr1 179945842 179945930 -102247734 - L1MB7 LINE L1 -6438 104 16 * 1233 99 36 16 chr1 179945945 179946137 -102247527 - L1PA10 LINE L1 -4 6164 5969 774 141 8 0 chr1 179946334 179946455 -102247209 - AluJb SINE Alu -13 299 178 1114 192 5 0 chr1 179946464 179946657 -102247007 - AluJo SINE Alu -107 205 12 302 242 125 92 chr1 179946924 179947164 -102246500 - L1ME4a LINE L1 -9 6112 5865 4858 107 7 4 chr1 179947535 179948252 -102245412 - L1PA13 LINE L1 -2 6161 5443 249 182 0 0 chr1 179948253 179948297 -102245367 + L1PA13 LINE L1 5433 5476 -858 * 1377 35 40 0 chr1 179948296 179948511 -102245153 + L1PA4 LINE L1 5951 6172 0 1466 113 19 3 chr1 179948514 179948829 -102244835 - L1P4 LINE L1 -722 5441 5121 1041 193 72 68 chr1 179948868 179949321 -102244343 - MLT1C LTR MaLR -1 466 1 23 68 0 0 chr1 179949375 179949419 -102244245 + AT_rich Low_complexity Low_complexity 1 44 0 593 198 0 0 chr1 179949555 179949661 -102244003 - FLAM_A SINE Alu -32 110 5 219 69 0 0 chr1 179949988 179950017 -102243647 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 234 313 16 chr1 179951332 179951396 -102242268 - MIR SINE MIR -103 105 23 207 330 72 10 chr1 179951778 179951875 -102241789 + MIR SINE MIR 49 151 -111 213 310 0 70 chr1 179953978 179954049 -102239615 - MIR SINE MIR -88 120 55 237 234 72 43 chr1 179954381 179954483 -102239181 - MIR3 SINE MIR -49 159 57 246 32 0 0 chr1 179954747 179954778 -102238886 + (CA)n Simple_repeat Simple_repeat 2 32 0 354 318 133 46 chr1 179954811 179955179 -102238485 - L3 LINE CR1 -2 1575 1176 306 132 0 0 chr1 179955212 179955265 -102238399 + (TA)n Simple_repeat Simple_repeat 1 53 0 1324 129 0 57 chr1 179956330 179956578 -102237086 + L1MA5A LINE L1 6064 6297 0 2293 91 0 7 chr1 179958014 179958310 -102235354 - AluY SINE Alu -17 294 1 275 271 0 0 chr1 179958908 179958967 -102234697 - L2 LINE L2 -3 3310 3252 654 323 30 0 chr1 179959387 179959588 -102234076 + MIR SINE MIR 22 228 -34 21 0 0 0 chr1 179959926 179959947 -102233717 + AT_rich Low_complexity Low_complexity 1 21 0 234 240 40 0 chr1 179960002 179960052 -102233612 + L2 LINE L2 3262 3313 0 612 146 0 0 chr1 179960784 179960880 -102232784 + L1MA1 LINE L1 6195 6290 -12 23 0 0 0 chr1 179960907 179960930 -102232734 + AT_rich Low_complexity Low_complexity 1 23 0 270 194 0 0 chr1 179961033 179961095 -102232569 + A-rich Low_complexity Low_complexity 4 65 0 2539 85 6 20 chr1 179961213 179961503 -102232161 - HSMAR1 DNA Mariner -666 621 335 2644 30 3 0 chr1 179961503 179961806 -102231858 - AluY SINE Alu -7 304 1 2539 85 6 20 chr1 179961806 179961869 -102231795 - HSMAR1 DNA Mariner -952 335 273 * 4548 110 33 0 chr1 179961864 179962501 -102231163 + HSMAR1 DNA Mariner 629 1286 -1 271 346 59 7 chr1 179962501 179962635 -102231029 - MLT1L LTR MaLR -128 487 347 331 276 105 77 chr1 179962603 179962784 -102230880 - MLT1J LTR MaLR -214 297 112 447 285 70 27 chr1 179964052 179964238 -102229426 - MIR SINE MIR -59 203 10 325 208 56 0 chr1 179965414 179965486 -102228178 - MER5A DNA MER1_type -113 76 1 1610 226 35 61 chr1 179967308 179967800 -102225864 + MLT1D LTR MaLR 27 505 0 636 202 0 8 chr1 179968063 179968187 -102225477 - FLAM_A SINE Alu -2 140 18 1454 230 121 58 chr1 179968188 179969057 -102224607 - Charlie2 DNA MER1_type -83 2779 1856 327 285 116 58 chr1 179969146 179969318 -102224346 - Charlie2 DNA MER1_type -2675 187 6 247 209 139 47 chr1 179969539 179969625 -102224039 + L2 LINE L2 3216 3309 -4 7678 17 1 0 chr1 179969826 179970823 -102222841 + L1PA3 LINE L1 5171 6168 0 429 281 152 28 chr1 179972640 179972818 -102220846 - MIR SINE MIR -26 236 37 193 295 103 13 chr1 179973386 179973464 -102220200 + L3 LINE CR1 1145 1229 -348 280 239 26 80 chr1 179974436 179974549 -102219115 + L3 LINE CR1 1404 1510 -67 218 349 36 0 chr1 179975167 179975250 -102218414 - MIR SINE MIR -12 250 165 620 301 103 60 chr1 179975287 179975735 -102217929 - MLT1J LTR MaLR -44 467 1 210 356 40 0 chr1 179975739 179975840 -102217824 - MIR SINE MIR -109 153 49 1342 217 20 26 chr1 179975858 179976162 -102217502 - L1MD1 LINE L1 -16 6226 5925 207 0 0 0 chr1 179976162 179976185 -102217479 + (CA)n Simple_repeat Simple_repeat 2 24 0 281 225 0 9 chr1 179976262 179976373 -102217291 + (TA)n Simple_repeat Simple_repeat 2 111 0 291 200 9 73 chr1 179976383 179976457 -102217207 - L1M4b LINE L1 -5179 1680 1607 586 250 51 6 chr1 179976457 179976633 -102217031 - L1MD1 LINE L1 -331 5911 767 249 33 0 0 chr1 179976633 179976663 -102217001 + (TG)n Simple_repeat Simple_repeat 1 30 0 1960 124 4 0 chr1 179976667 179976942 -102216722 - AluSp SINE Alu -37 276 1 2483 250 61 31 chr1 179976964 179978266 -102215398 - L1M4c LINE L1 -4741 2218 895 186 388 33 25 chr1 179978419 179978540 -102215124 + L2 LINE L2 3175 3296 -17 985 321 35 25 chr1 179978818 179979139 -102214525 - L1ME3A LINE L1 -317 5853 5522 2445 73 3 0 chr1 179979139 179979439 -102214225 + AluSx SINE Alu 1 301 -11 985 321 35 25 chr1 179979439 179979705 -102213959 - L1ME3A LINE L1 -648 5522 5260 1719 200 55 0 chr1 179979716 179980046 -102213618 + MER7A DNA MER2_type 1 346 0 338 341 54 58 chr1 179980115 179980320 -102213344 - L1ME3A LINE L1 -2 6168 5965 263 265 144 45 chr1 179980363 179980718 -102212946 - L1ME3A LINE L1 -937 5209 4820 1973 109 26 0 chr1 179981247 179981555 -102212109 - AluSq SINE Alu 0 327 13 211 128 26 0 chr1 179985359 179985398 -102208266 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 188 0 0 chr1 179985521 179985569 -102208095 + (CA)n Simple_repeat Simple_repeat 2 49 0 215 370 101 0 chr1 179985839 179985958 -102207706 + MIR3 SINE MIR 78 208 0 1459 225 65 68 chr1 179986382 179986826 -102206838 + MER31B LTR ERV1 1 443 -23 649 186 0 36 chr1 179987185 179987325 -102206339 + FLAM_A SINE Alu 8 142 0 675 265 20 40 chr1 179987388 179987637 -102206027 + L1ME LINE L1 5354 5597 -569 621 258 20 93 chr1 179987644 179987989 -102205675 + L1MDa LINE L1 21 340 -6200 771 218 111 8 chr1 179988333 179988594 -102205070 + L1MDa LINE L1 1053 1340 -5203 240 111 0 0 chr1 179988955 179988991 -102204673 + (TA)n Simple_repeat Simple_repeat 1 36 0 785 268 56 63 chr1 179989151 179989725 -102203939 - Charlie2a DNA MER1_type -645 2217 1648 460 269 138 0 chr1 179989752 179989882 -102203782 + L1MDa LINE L1 575 722 -5818 3525 131 9 13 chr1 179989882 179990463 -102203201 + LTR10C LTR ERV1 5 505 0 1113 240 39 66 chr1 179990473 179990727 -102202937 + L1MDa LINE L1 749 1008 -5532 2102 88 10 31 chr1 179990727 179991021 -102202643 + AluY SINE Alu 1 288 -23 237 33 0 0 chr1 179991028 179991058 -102202606 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1113 240 39 66 chr1 179991058 179991158 -102202506 + L1MDa LINE L1 1014 1101 -5439 510 184 88 7 chr1 179991178 179991314 -102202350 + L1MDa LINE L1 1636 1782 -4758 4239 139 19 1 chr1 179991829 179992505 -102201159 + L1PA15 LINE L1 5465 6152 -13 2496 230 75 5 chr1 179992537 179993162 -102200502 + L1MD2 LINE L1 5475 6143 -216 275 270 0 0 chr1 179993165 179993239 -102200425 + L1MD2 LINE L1 6201 6274 -85 1385 244 92 7 chr1 179993317 179993776 -102199888 - L1ME2 LINE L1 -2 6162 5665 597 287 112 20 chr1 179993855 179995672 -102197992 - L1ME2 LINE L1 -970 5176 3007 334 211 0 0 chr1 179995676 179995747 -102197917 + L1 LINE L1 4217 4287 -1859 * 5292 166 37 29 chr1 179995741 179997327 -102196337 + L1PA16 LINE L1 4582 6166 0 309 278 19 19 chr1 179997697 179997805 -102195859 + L1ME LINE L1 613 720 -5914 598 284 92 47 chr1 179998529 179998982 -102194682 + L1ME LINE L1 1003 1485 -5057 1637 184 42 0 chr1 179998982 179999265 -102194399 - AluJo SINE Alu -17 295 1 598 284 92 47 chr1 179999265 179999342 -102194322 + L1ME LINE L1 1485 1557 -4985 10383 242 34 41 chr1 179999344 180000437 -102193227 + L1MA4A LINE L1 7 1107 -5742 2405 137 6 6 chr1 180000437 180000801 -102192863 - THE1B LTR MaLR 0 364 1 10383 242 34 41 chr1 180000801 180002628 -102191036 + L1MA4A LINE L1 1107 2904 -3945 6675 209 47 12 chr1 180002631 180005654 -102188010 + L1MA4A LINE L1 3552 6735 -270 1906 184 54 27 chr1 180005659 180006193 -102187471 - MLT2A2 LTR ERVL -7 547 2 486 185 70 0 chr1 180006196 180006367 -102187297 + L1MA4A LINE L1 6739 6982 -23 * 1051 287 75 16 chr1 180006361 180006977 -102186687 + L1ME LINE L1 1683 2334 -4491 384 284 21 50 chr1 180007226 180007367 -102186297 + MIR SINE MIR 67 203 -59 306 325 45 19 chr1 180007866 180008020 -102185644 + MIR SINE MIR 78 235 -27 361 316 123 0 chr1 180008714 180008828 -102184836 + MIR3 SINE MIR 14 141 -67 307 246 34 46 chr1 180008881 180009056 -102184608 + (TATATG)n Simple_repeat Simple_repeat 1 173 0 300 271 8 41 chr1 180009111 180009233 -102184431 + (TATG)n Simple_repeat Simple_repeat 3 120 0 242 269 87 48 chr1 180010737 180010841 -102182823 + L3 LINE CR1 1455 1562 -15 237 203 51 51 chr1 180010980 180011039 -102182625 + L1P4 LINE L1 5680 5738 -428 443 277 101 55 chr1 180011331 180011549 -102182115 + MIR SINE MIR 19 262 0 227 390 6 53 chr1 180011608 180011777 -102181887 - L2 LINE L2 -212 3060 2900 29 28 0 0 chr1 180013440 180013476 -102180188 + AT_rich Low_complexity Low_complexity 1 36 0 336 64 0 0 chr1 180014120 180014167 -102179497 + (CA)n Simple_repeat Simple_repeat 1 47 0 331 341 49 8 chr1 180014742 180014865 -102178799 - MIR3 SINE MIR -67 141 14 371 143 78 0 chr1 180014963 180015040 -102178624 - L1MA10 LINE L1 -1 6333 6251 223 328 42 25 chr1 180015184 180015303 -102178361 + L2 LINE L2 2933 3053 -219 309 231 241 0 chr1 180015448 180015556 -102178108 + L2 LINE L2 3137 3270 -2 206 326 106 59 chr1 180017360 180017431 -102176233 + L3 LINE CR1 883 949 -628 1459 210 52 9 chr1 180017431 180017755 -102175909 + MER58B DNA MER1_type 1 338 -3 206 326 106 59 chr1 180017755 180018088 -102175576 + L3 LINE CR1 949 1306 -271 212 308 187 0 chr1 180018539 180018630 -102175034 + MIR3 SINE MIR 91 198 -10 355 65 52 13 chr1 180018677 180018754 -102174910 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 298 235 15 106 chr1 180018979 180019111 -102174553 + MER106B DNA MER1_type 1 120 -939 4057 163 44 21 chr1 180019114 180019951 -102173713 - L1MA4 LINE L1 0 6300 5445 181 228 70 35 chr1 180021647 180021704 -102171960 - MIR SINE MIR -49 213 155 308 322 67 48 chr1 180021739 180021947 -102171717 + MIR SINE MIR 51 262 0 327 308 15 15 chr1 180023010 180023140 -102170524 - MER94 DNA DNA 0 134 5 245 290 14 0 chr1 180023526 180023595 -102170069 + L3 LINE CR1 1216 1285 -292 187 322 244 0 chr1 180023650 180023765 -102169899 + MIR3 SINE MIR 52 194 -14 358 330 9 0 chr1 180024405 180024511 -102169153 + U6 snRNA snRNA 1 107 0 2264 99 0 3 chr1 180024867 180025169 -102168495 - AluY SINE Alu -10 301 1 254 263 44 0 chr1 180025317 180025431 -102168233 + (TA)n Simple_repeat Simple_repeat 1 119 0 208 305 0 17 chr1 180025521 180025580 -102168084 - MIR SINE MIR -63 145 88 2640 93 13 16 chr1 180026419 180026795 -102166869 + THE1C LTR MaLR 1 375 0 515 135 11 22 chr1 180026795 180026884 -102166780 + THE1C-int LTR MaLR 1 88 -1492 * 4855 141 38 17 chr1 180026879 180027652 -102166012 + THE1C-int LTR MaLR 659 1447 -133 603 290 64 12 chr1 180028055 180028383 -102165281 + L1M4 LINE L1 2142 2486 -3660 817 251 89 28 chr1 180028438 180029036 -102164628 + L1M4 LINE L1 2667 3300 -2846 231 88 0 0 chr1 180029651 180029685 -102163979 + (TG)n Simple_repeat Simple_repeat 1 34 0 224 270 0 16 chr1 180031303 180031366 -102162298 + (CCA)n Simple_repeat Simple_repeat 2 63 0 8509 184 43 16 chr1 180031721 180032121 -102161543 + L1PB2 LINE L1 3272 3660 -2491 338 0 24 0 chr1 180032121 180032163 -102161501 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 8509 184 43 16 chr1 180032163 180032190 -102161474 + L1PB2 LINE L1 3660 3685 -2466 387 0 0 0 chr1 180032190 180032233 -102161431 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 8509 184 43 16 chr1 180032233 180034619 -102159045 + L1PB2 LINE L1 3685 6151 0 3815 206 28 12 chr1 180034631 180035468 -102158196 + L1MB1 LINE L1 5318 6167 -1 3819 200 53 30 chr1 180035469 180036395 -102157269 + L1MD1 LINE L1 5285 6231 -11 2306 78 0 3 chr1 180036403 180036697 -102156967 + AluY SINE Alu 19 311 0 311 318 90 11 chr1 180037291 180037441 -102156223 + MIR3 SINE MIR 10 167 -67 1807 152 152 11 chr1 180038139 180038514 -102155150 + MSTA LTR MaLR 1 428 0 221 294 79 32 chr1 180039515 180039641 -102154023 + MIR3 SINE MIR 64 195 -13 1483 123 0 0 chr1 180041542 180041745 -102151919 + AluSg SINE Alu 1 203 -107 210 71 0 0 chr1 180041752 180041780 -102151884 + (A)n Simple_repeat Simple_repeat 1 28 0 9061 29 1 0 chr1 180043474 180045327 -102148337 + L1PA4 LINE L1 4288 6152 -3 23 33 0 0 chr1 180045327 180045357 -102148307 + AT_rich Low_complexity Low_complexity 1 30 0 308 291 264 16 chr1 180046520 180046702 -102146962 + L3 LINE CR1 1294 1520 -57 2292 112 0 0 chr1 180046862 180047157 -102146507 + AluSx SINE Alu 1 295 -17 188 382 24 41 chr1 180047584 180047707 -102145957 + L2 LINE L2 2926 3046 -226 194 326 54 47 chr1 180048799 180048928 -102144736 - MIR SINE MIR -55 207 78 213 241 0 69 chr1 180049368 180049426 -102144238 - L2 LINE L2 0 3272 3219 233 29 0 29 chr1 180049480 180049515 -102144149 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 254 259 139 60 chr1 180050868 180051049 -102142615 - MIR SINE MIR -62 146 12 617 263 50 17 chr1 180051824 180052003 -102141661 - MIR SINE MIR -70 192 8 1488 184 3 32 chr1 180052279 180052594 -102141070 - AluJo SINE Alu -6 306 1 304 389 0 0 chr1 180053913 180054021 -102139643 - MIR SINE MIR -69 139 32 252 0 0 0 chr1 180054888 180054916 -102138748 + (TC)n Simple_repeat Simple_repeat 2 29 0 237 65 0 0 chr1 180054915 180054946 -102138718 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 21 0 0 0 chr1 180057504 180057525 -102136139 + AT_rich Low_complexity Low_complexity 1 21 0 196 328 33 16 chr1 180058678 180058739 -102134925 + L2 LINE L2 3144 3205 -67 241 226 0 20 chr1 180059231 180059333 -102134331 + GA-rich Low_complexity Low_complexity 3 102 0 491 360 68 14 chr1 180061193 180061563 -102132101 + L1MEc LINE L1 215 604 -5792 1743 276 47 19 chr1 180061636 180062335 -102131329 + L1MEc LINE L1 1345 2063 -4333 430 267 22 0 chr1 180062337 180062472 -102131192 - Charlie1 DNA MER1_type -1 2760 2623 * 754 285 27 5 chr1 180062469 180062690 -102130974 - Charlie1 DNA MER1_type -2535 226 1 1418 247 40 13 chr1 180062717 180063267 -102130397 + L1MEc LINE L1 2079 2618 -3597 606 346 113 28 chr1 180063394 180063899 -102129765 + L3 LINE CR1 1016 1563 -14 220 371 57 11 chr1 180064436 180064611 -102129053 + MIR SINE MIR 67 249 -13 28 29 0 0 chr1 180065203 180065238 -102128426 + AT_rich Low_complexity Low_complexity 1 35 0 1238 83 6 0 chr1 180066389 180066558 -102127106 + L1PA8 LINE L1 6003 6172 0 4625 64 51 3 chr1 180066740 180067350 -102126314 + L1PA8 LINE L1 5524 6162 -10 480 332 25 9 chr1 180067518 180067715 -102125949 + MIR3 SINE MIR 7 207 -1 285 292 10 27 chr1 180068318 180068434 -102125230 + MIR SINE MIR 31 141 -67 419 290 56 49 chr1 180068465 180068627 -102125037 - MIR3 SINE MIR -8 200 38 21 0 0 0 chr1 180070299 180070320 -102123344 + AT_rich Low_complexity Low_complexity 1 21 0 292 366 46 0 chr1 180070907 180071060 -102122604 - MER117 DNA MER1_type -36 161 2 228 301 146 10 chr1 180071423 180071526 -102122138 - MIR SINE MIR -129 133 17 329 291 182 0 chr1 180071544 180071654 -102122010 + MIR3 SINE MIR 74 203 -5 319 339 67 33 chr1 180071850 180072030 -102121634 + MIR3 SINE MIR 9 194 -14 307 244 16 16 chr1 180072791 180072914 -102120750 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 * 346 235 37 0 chr1 180072834 180072915 -102120749 + (TCTCTG)n Simple_repeat Simple_repeat 3 86 0 23 33 0 0 chr1 180074907 180074937 -102118727 + AT_rich Low_complexity Low_complexity 1 30 0 1780 128 9 78 chr1 180075493 180075812 -102117852 + AluSx SINE Alu 1 297 -15 242 286 133 31 chr1 180076267 180076365 -102117299 - L2 LINE L2 -15 3257 3150 1593 199 85 0 chr1 180076533 180076849 -102116815 - MER2 DNA MER2_type -1 343 1 1123 173 0 5 chr1 180078156 180078347 -102115317 - Tigger7 DNA MER2_type 0 2487 2298 * 1503 221 60 0 chr1 180078343 180078642 -102115022 - Tigger7 DNA MER2_type -2169 318 2 442 293 72 48 chr1 180079126 180079334 -102114330 - MIR SINE MIR -2 260 48 21 0 0 0 chr1 180080147 180080168 -102113496 + AT_rich Low_complexity Low_complexity 1 21 0 742 261 125 56 chr1 180082018 180082467 -102111197 + MLT1H LTR MaLR 66 545 -4 188 303 61 30 chr1 180087845 180087911 -102105753 + MER5A DNA MER1_type 21 88 -101 27 29 0 0 chr1 180088402 180088436 -102105228 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr1 180089224 180089247 -102104417 + (GA)n Simple_repeat Simple_repeat 2 24 0 211 239 119 0 chr1 180090365 180090432 -102103232 - MIR SINE MIR -65 197 123 3663 66 0 0 chr1 180090653 180091122 -102102542 - L1PA7 LINE L1 -432 5722 5254 3180 72 2 16 chr1 180091126 180091556 -102102108 + L1PA7 LINE L1 5730 6153 -1 708 208 47 21 chr1 180091622 180091814 -102101850 + L1MB1 LINE L1 4874 5070 -1076 21 57 0 0 chr1 180091821 180091856 -102101808 + AT_rich Low_complexity Low_complexity 1 35 0 4171 177 55 14 chr1 180092006 180093062 -102100602 + L1MB1 LINE L1 5072 6168 0 2115 130 3 0 chr1 180093109 180093417 -102100247 - AluSx SINE Alu -3 309 1 3273 77 5 0 chr1 180093913 180094344 -102099320 + L1PA8 LINE L1 5740 6172 0 28 0 0 0 chr1 180094986 180095014 -102098650 + AT_rich Low_complexity Low_complexity 1 28 0 1620 183 39 3 chr1 180096227 180096347 -102097317 + AluSx SINE Alu 1 115 -197 232 27 54 0 chr1 180096347 180096384 -102097280 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1620 183 39 3 chr1 180096384 180096547 -102097117 + AluSx SINE Alu 115 294 -18 283 357 54 9 chr1 180096690 180096802 -102096862 - L2 LINE L2 0 3272 3156 2456 90 0 0 chr1 180098089 180098399 -102095265 + AluSx SINE Alu 1 310 -2 803 177 25 0 chr1 180098410 180098568 -102095096 - L1PBa LINE L1 -5912 951 790 915 200 107 0 chr1 180098583 180098742 -102094922 + ERVL LTR ERVL 1015 1202 -4562 291 54 0 0 chr1 180098742 180098779 -102094885 + (TTGG)n Simple_repeat Simple_repeat 1 37 0 915 200 107 0 chr1 180098779 180098824 -102094840 + ERVL LTR ERVL 1202 1241 -4523 2760 160 18 44 chr1 180098824 180099374 -102094290 + ERVL LTR ERVL 5067 5602 -162 1388 296 14 3 chr1 180099375 180099730 -102093934 + MLT2B1 LTR ERVL 162 520 0 500 348 41 25 chr1 180099769 180100013 -102093651 + MIR SINE MIR 3 250 -12 22 35 0 0 chr1 180100022 180100051 -102093613 + AT_rich Low_complexity Low_complexity 1 29 0 2947 93 60 7 chr1 180100070 180100500 -102093164 - MLT2A2 LTR ERVL 0 453 1 24 0 0 0 chr1 180100558 180100582 -102093082 + AT_rich Low_complexity Low_complexity 1 24 0 212 192 179 0 chr1 180101605 180101683 -102091981 - L2 LINE L2 -1219 2095 2004 291 28 0 0 chr1 180102203 180102239 -102091425 + (GTTTG)n Simple_repeat Simple_repeat 4 39 0 862 207 5 27 chr1 180103548 180103736 -102089928 - MER5A DNA MER1_type -4 185 2 2503 65 3 0 chr1 180104917 180105223 -102088441 - AluY SINE Alu -4 307 1 949 180 0 17 chr1 180105293 180105471 -102088193 + MLT1B LTR MaLR 1 175 -215 1123 53 0 0 chr1 180105473 180105604 -102088060 + AluYa5 SINE Alu 1 131 -180 2285 70 0 14 chr1 180105611 180105933 -102087731 + AluY SINE Alu 1 318 0 562 128 12 0 chr1 180105995 180106081 -102087583 + MLT1B LTR MaLR 304 390 0 215 190 17 0 chr1 180107880 180107938 -102085726 + CT-rich Low_complexity Low_complexity 2 60 0 454 261 206 5 chr1 180109506 180109724 -102083940 - MIR SINE MIR 0 262 1 2519 36 10 0 chr1 180110692 180111001 -102082663 - L1PA4 LINE L1 -3 6152 5841 334 49 0 0 chr1 180111001 180111042 -102082622 + L1P2 LINE L1 5697 5737 -418 * 3917 25 0 0 chr1 180111040 180111516 -102082148 - L1PA3 LINE L1 -814 5332 4857 7166 19 1 0 chr1 180111516 180112339 -102081325 + L1PA3 LINE L1 5328 6155 0 31 92 0 0 chr1 180113205 180113292 -102080372 + AT_rich Low_complexity Low_complexity 1 87 0 277 318 52 23 chr1 180113642 180113815 -102079849 + L1MC/D LINE L1 5631 5808 -2000 1770 130 30 3 chr1 180113997 180114297 -102079367 - L1MA2 LINE L1 -212 6092 5785 315 333 78 8 chr1 180114642 180114831 -102078833 - L1MC/D LINE L1 -515 5647 5488 352 102 34 17 chr1 180115960 180116019 -102077645 + MSTA LTR MaLR 1 60 -368 303 28 0 0 chr1 180116680 180116716 -102076948 + (CA)n Simple_repeat Simple_repeat 1 36 0 297 128 0 0 chr1 180117478 180117525 -102076139 + (TC)n Simple_repeat Simple_repeat 2 48 0 2042 148 0 0 chr1 180119460 180119764 -102073900 + AluSq SINE Alu 1 304 -9 27 49 0 0 chr1 180121085 180121126 -102072538 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr1 180121217 180121242 -102072422 + AT_rich Low_complexity Low_complexity 1 25 0 429 314 39 0 chr1 180121375 180121531 -102072133 + MIR SINE MIR 67 228 -34 180 309 200 5 chr1 180121534 180121754 -102071910 + L2 LINE L2 1774 2036 -1278 203 222 56 0 chr1 180121795 180121849 -102071815 + T-rich Low_complexity Low_complexity 3 59 0 215 280 120 46 chr1 180121912 180122087 -102071577 + L2 LINE L2 2127 2314 -1000 385 363 13 13 chr1 180122232 180122389 -102071275 + MIR SINE MIR 2 158 -104 657 317 35 0 chr1 180122469 180122668 -102070996 - MIR SINE MIR -26 236 31 219 36 0 0 chr1 180123235 180123263 -102070401 + (ATG)n Simple_repeat Simple_repeat 1 28 0 314 326 80 58 chr1 180124248 180124573 -102069091 - L1MEd LINE L1 -4887 1232 901 189 94 0 0 chr1 180124677 180124709 -102068955 + (TC)n Simple_repeat Simple_repeat 2 33 0 431 35 18 0 chr1 180125841 180125898 -102067766 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 466 298 31 47 chr1 180126157 180126412 -102067252 - MIR SINE MIR -2 260 10 445 291 74 11 chr1 180127843 180128032 -102065632 - L2 LINE L2 0 3313 3113 25 90 0 0 chr1 180128861 180128928 -102064736 + AT_rich Low_complexity Low_complexity 1 67 0 594 78 17 17 chr1 180129264 180129380 -102064284 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 186 43 0 0 chr1 180129906 180129929 -102063735 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr1 180130167 180130197 -102063467 + AT_rich Low_complexity Low_complexity 1 30 0 191 36 36 0 chr1 180130291 180130319 -102063345 + (TA)n Simple_repeat Simple_repeat 1 29 0 404 362 42 29 chr1 180130619 180131003 -102062661 - L2 LINE L2 -892 2422 2034 752 228 46 41 chr1 180131240 180131459 -102062205 + MIR SINE MIR 12 231 -31 321 26 0 0 chr1 180131611 180131649 -102062015 + (GA)n Simple_repeat Simple_repeat 2 39 0 258 298 24 73 chr1 180131753 180131877 -102061787 - L2 LINE L2 -541 2773 2656 685 256 61 30 chr1 180131894 180132222 -102061442 + L1ME1 LINE L1 4285 4622 -1524 2590 221 38 62 chr1 180132244 180133144 -102060520 + L1ME1 LINE L1 5205 6089 -77 950 179 46 111 chr1 180133156 180133418 -102060246 + MER76 LTR ERV 444 688 0 22 0 0 0 chr1 180135120 180135142 -102058522 + AT_rich Low_complexity Low_complexity 1 22 0 265 328 76 0 chr1 180135150 180135281 -102058383 + HERVL68 LTR ERVL 2148 2288 -749 1973 238 41 20 chr1 180135319 180135861 -102057803 + HERVL68 LTR ERVL 2288 2874 -163 2310 211 41 67 chr1 180136091 180136796 -102056868 + MER76 LTR ERV 1 687 -1 870 239 73 0 chr1 180137885 180138090 -102055574 + MER76 LTR ERV 66 285 -403 216 0 0 0 chr1 180138209 180138233 -102055431 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1264 280 119 17 chr1 180138513 180138985 -102054679 + MLT1H LTR MaLR 28 547 -2 266 348 147 14 chr1 180139084 180139373 -102054291 + L2 LINE L2 2731 3059 -213 25 65 0 0 chr1 180139540 180139586 -102054078 + AT_rich Low_complexity Low_complexity 1 46 0 201 182 36 18 chr1 180139622 180139677 -102053987 + (TTTAA)n Simple_repeat Simple_repeat 3 58 0 373 266 60 93 chr1 180139677 180139925 -102053739 - MER112 DNA MER1_type -9 251 12 201 319 72 0 chr1 180139929 180139998 -102053666 + L2 LINE L2 1718 1791 -1523 1184 279 57 96 chr1 180140005 180140611 -102053053 + L2 LINE L2 2244 2872 -441 1360 128 41 5 chr1 180140611 180140830 -102052834 + MER30 DNA MER1_type 4 230 0 1184 279 57 96 chr1 180140830 180141002 -102052662 + L2 LINE L2 2872 3049 -264 2641 138 50 4 chr1 180141002 180141466 -102052198 + LTR19A LTR ERV1 2 486 0 1184 279 57 96 chr1 180141466 180141799 -102051865 + L2 LINE L2 3049 3312 -1 221 81 0 27 chr1 180143093 180143130 -102050534 + (CATAA)n Simple_repeat Simple_repeat 3 38 0 1121 156 71 9 chr1 180143837 180144048 -102049616 - L1PA16 LINE L1 -30 6136 5913 513 282 22 72 chr1 180144091 180144476 -102049188 + L1ME LINE L1 1775 2178 -4543 2838 10 0 0 chr1 180144907 180145218 -102048446 + AluYa5 SINE Alu 1 311 0 264 281 112 20 chr1 180146292 180146488 -102047176 + L1ME LINE L1 5925 6138 -377 3225 90 9 9 chr1 180146776 180147220 -102046444 - MLT2A1 LTR ERVL 0 444 1 706 212 21 93 chr1 180147389 180147625 -102046039 - MER20 DNA MER1_type 0 219 1 275 328 64 16 chr1 180148363 180148488 -102045176 + L2 LINE L2 2625 2755 -559 654 215 0 0 chr1 180150441 180150571 -102043093 + FAM SINE Alu 1 41 -8 260 256 80 16 chr1 180151204 180151329 -102042335 - L1ME3A LINE L1 -208 5962 5830 235 298 161 6 chr1 180151418 180151586 -102042078 - L1ME3A LINE L1 -2432 5610 5417 294 73 0 0 chr1 180151592 180151633 -102042031 + (TG)n Simple_repeat Simple_repeat 2 42 0 451 318 66 15 chr1 180151640 180151838 -102041826 - L1ME3A LINE L1 -831 5315 5108 224 220 44 0 chr1 180152595 180152686 -102040978 + (TA)n Simple_repeat Simple_repeat 2 96 0 1361 30 0 0 chr1 180152719 180152883 -102040781 + L1HS LINE L1 5662 5825 -330 338 41 20 0 chr1 180152883 180152931 -102040733 + L1PA6 LINE L1 6105 6154 0 451 327 80 10 chr1 180153069 180153268 -102040396 + MIR SINE MIR 47 259 -3 733 192 0 0 chr1 180154305 180154430 -102039234 + FLAM_C SINE Alu 1 125 -8 1914 240 60 40 chr1 180154446 180155226 -102038438 - MER52A LTR ERV1 -948 807 90 228 349 61 23 chr1 180155333 180155465 -102038199 + MIR SINE MIR 32 168 -94 181 281 11 112 chr1 180156533 180156622 -102037042 + L2 LINE L2 3190 3269 -3 719 128 18 0 chr1 180157017 180157126 -102036538 + AluSp/q SINE Alu 179 289 -24 363 263 69 31 chr1 180159106 180159294 -102034370 - MIR SINE MIR -42 220 31 276 301 90 30 chr1 180159464 180159597 -102034067 + MIR3 SINE MIR 20 160 -48 * 317 369 21 7 chr1 180159560 180159701 -102033963 - MER5A DNA MER1_type -14 175 33 257 382 0 0 chr1 180159633 180159722 -102033942 + MER5A DNA MER1_type 101 189 0 * 193 256 0 0 chr1 180159722 180159757 -102033907 + MIR3 SINE MIR 153 187 -21 302 330 85 21 chr1 180159790 180159978 -102033686 - MIR SINE MIR -59 203 4 23 0 0 0 chr1 180160112 180160135 -102033529 + AT_rich Low_complexity Low_complexity 1 23 0 183 256 0 0 chr1 180160802 180160841 -102032823 + MIR3 SINE MIR 149 187 -21 180 215 152 25 chr1 180160874 180160953 -102032711 - MIR SINE MIR -59 203 115 1302 110 3 3 chr1 180161349 180161623 -102032041 - L1PA13 LINE L1 -555 5613 5240 3640 103 2 0 chr1 180161625 180162141 -102031523 + L1PA13 LINE L1 5643 6159 -4 180 325 225 17 chr1 180162165 180162285 -102031379 - L3 LINE CR1 -65 1512 1368 284 361 19 52 chr1 180162307 180162520 -102031144 + MIR SINE MIR 19 224 -38 869 195 0 0 chr1 180162760 180162909 -102030755 + FRAM SINE Alu 8 156 -20 2454 88 0 0 chr1 180163428 180163736 -102029928 + AluY SINE Alu 1 308 -3 183 296 56 0 chr1 180163764 180163818 -102029846 + L2 LINE L2 2987 3043 -229 4227 29 0 0 chr1 180163821 180164313 -102029351 - L1PA4 LINE L1 -183 5972 5481 11172 26 21 0 chr1 180164313 180166415 -102027249 - L1PA2 LINE L1 -1 6154 4026 1323 55 0 0 chr1 180166416 180166581 -102027083 + L1PA4 LINE L1 5961 6125 -30 281 26 0 26 chr1 180166581 180166620 -102027044 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 48 18 0 0 chr1 180166965 180167020 -102026644 + AT_rich Low_complexity Low_complexity 1 55 0 243 317 39 39 chr1 180167048 180167152 -102026512 + L2 LINE L2 3169 3272 0 389 355 84 23 chr1 180167721 180167935 -102025729 - MIR SINE MIR -29 233 7 2350 279 129 28 chr1 180170264 180171281 -102022383 + L2 LINE L2 1641 2760 -554 667 271 55 96 chr1 180171279 180171677 -102021987 + L2 LINE L2 2928 3309 -4 * 1844 159 0 0 chr1 180171781 180172078 -102021586 - AluJb SINE Alu 0 303 7 27 29 0 0 chr1 180173088 180173122 -102020542 + AT_rich Low_complexity Low_complexity 1 34 0 334 325 147 0 chr1 180173392 180173583 -102020081 - L3 LINE CR1 -57 1520 1302 243 299 6 152 chr1 180174268 180174432 -102019232 - MIR3 SINE MIR -4 204 65 699 143 118 50 chr1 180175432 180175593 -102018071 + L1MA7 LINE L1 6115 6286 -5 688 118 73 0 chr1 180176315 180176425 -102017239 + MER67A LTR ERV1 82 199 -344 210 91 0 0 chr1 180176431 180176464 -102017200 + (TG)n Simple_repeat Simple_repeat 2 34 0 306 86 103 0 chr1 180176482 180176540 -102017124 + MER67A LTR ERV1 478 541 -2 344 233 0 14 chr1 180176557 180176630 -102017034 + MER63 DNA MER1_type 675 746 -90 235 260 94 0 chr1 180176817 180176913 -102016751 + L1ME LINE L1 1860 1964 -4432 769 233 57 10 chr1 180176957 180177150 -102016514 - MER70B LTR ERVL -146 432 231 426 250 56 0 chr1 180177155 180177263 -102016401 + L1ME LINE L1 5632 5745 -490 1147 345 113 42 chr1 180177594 180179238 -102014426 - L2 LINE L2 -1 3312 1544 405 320 39 56 chr1 180180412 180180643 -102013021 - MIR SINE MIR -2 260 34 205 383 114 31 chr1 180180770 180181094 -102012570 - L2 LINE L2 -4 3268 2918 296 354 145 36 chr1 180181297 180181351 -102012313 + L3 LINE CR1 701 748 -829 2513 51 0 16 chr1 180181351 180181665 -102011999 + AluY SINE Alu 1 309 -2 296 354 145 36 chr1 180181665 180181969 -102011695 + L3 LINE CR1 748 1098 -479 273 376 62 49 chr1 180182336 180182642 -102011022 + L2 LINE L2 2948 3257 -15 1328 119 70 13 chr1 180183100 180183327 -102010337 - Tigger5 DNA MER2_type -1 2322 2083 393 250 0 0 chr1 180183309 180183389 -102010275 - Tigger5 DNA MER2_type -2242 81 2 * 288 264 91 45 chr1 180183533 180183643 -102010021 + L3 LINE CR1 1458 1572 -5 702 278 90 5 chr1 180184447 180184670 -102008994 - MIR SINE MIR -19 243 2 224 281 191 0 chr1 180184962 180185051 -102008613 + MIR SINE MIR 86 191 -71 1474 227 97 33 chr1 180185056 180185509 -102008155 - MER90 LTR ERV1 -3 611 130 503 299 89 28 chr1 180186152 180186443 -102007221 + L2 LINE L2 3005 3313 0 2344 81 0 0 chr1 180186460 180186758 -102006906 + AluY SINE Alu 3 300 -11 3113 155 15 4 chr1 180186916 180187464 -102006200 - L1MA6 LINE L1 0 6300 5747 958 140 0 0 chr1 180187473 180187630 -102006034 + L1MA6 LINE L1 5599 5755 -545 281 364 43 71 chr1 180187632 180187772 -102005892 + L2 LINE L2 3137 3272 0 397 381 73 14 chr1 180187842 180188199 -102005465 - L3 LINE CR1 -732 845 468 313 197 16 0 chr1 180188482 180188543 -102005121 - MER58 DNA MER1_type 0 2420 2359 5539 128 32 8 chr1 180188602 180189624 -102004040 + L1PB2 LINE L1 5102 6141 -10 1752 158 135 49 chr1 180189655 180190041 -102003623 + MSTB LTR MaLR 8 426 0 581 267 30 0 chr1 180190041 180190176 -102003488 - MER58A DNA MER1_type 0 153 15 417 54 0 0 chr1 180190219 180190275 -102003389 + (TC)n Simple_repeat Simple_repeat 2 57 0 492 48 0 0 chr1 180190275 180190338 -102003326 + (CA)n Simple_repeat Simple_repeat 1 63 0 1043 211 38 0 chr1 180191195 180191460 -102002204 - L1MA4 LINE L1 -16 7000 6726 4313 175 17 10 chr1 180191646 180193052 -102000612 - L1MA4 LINE L1 -283 6733 5317 2493 49 3 13 chr1 180193052 180193357 -102000307 - AluY SINE Alu -9 302 1 4313 175 17 10 chr1 180193357 180193438 -102000226 - L1MA4 LINE L1 -1699 5317 5238 537 156 64 28 chr1 180193439 180193548 -102000116 + THE1C LTR MaLR 1 113 -262 1471 178 10 3 chr1 180193549 180193842 -101999822 - L1MA4 LINE L1 -2123 4739 4445 5404 234 71 24 chr1 180193862 180194123 -101999541 - L1MA4 LINE L1 -3108 3754 3507 2301 101 0 0 chr1 180194123 180194420 -101999244 - AluSc SINE Alu -10 299 3 5404 234 71 24 chr1 180194420 180198651 -101995013 - L1MA4 LINE L1 -3355 3507 6 5817 201 45 16 chr1 180198947 180200242 -101993422 - L1M1 LINE L1 -4066 1262 14 300 294 116 31 chr1 180200321 180201328 -101992336 - L1M4 LINE L1 -2377 3769 2677 431 272 29 10 chr1 180201655 180201758 -101991906 - MER5A DNA MER1_type -3 186 82 371 304 5 82 chr1 180202654 180202838 -101990826 + MIR3 SINE MIR 32 201 -7 287 65 22 0 chr1 180203812 180203858 -101989806 + (TG)n Simple_repeat Simple_repeat 1 47 0 221 341 127 8 chr1 180204229 180204355 -101989309 + MIR3 SINE MIR 65 205 -3 2035 82 0 11 chr1 180204843 180205112 -101988552 - AluSc SINE Alu -3 306 41 1456 197 59 126 chr1 180206586 180207094 -101986570 - LTR45B LTR ERV1 -14 475 2 222 368 45 23 chr1 180207445 180207578 -101986086 - L2 LINE L2 0 3272 3137 22 35 0 0 chr1 180207593 180207622 -101986042 + AT_rich Low_complexity Low_complexity 1 29 0 554 301 6 0 chr1 180209103 180209259 -101984405 - MIR SINE MIR -104 158 2 206 318 16 0 chr1 180209369 180209432 -101984232 - MIR SINE MIR -148 114 51 1134 104 0 0 chr1 180209517 180209671 -101983993 + AluSq SINE Alu 153 306 -7 267 356 10 0 chr1 180209678 180209779 -101983885 - MIR3 SINE MIR -1 207 106 189 307 40 0 chr1 180209877 180209952 -101983712 + MIR SINE MIR 158 235 -27 2419 47 40 7 chr1 180210766 180211065 -101982599 - AluY SINE Alu -2 309 1 511 318 23 6 chr1 180212033 180212209 -101981455 - MIR3 SINE MIR -11 197 19 2194 101 0 1 chr1 180213536 180213844 -101979820 - L1PA8A LINE L1 -31 6131 5834 246 351 101 7 chr1 180215485 180215633 -101978031 - L2 LINE L2 0 3272 3111 1175 311 46 27 chr1 180215644 180216315 -101977349 + L1MC4a LINE L1 5378 6133 -1675 1771 158 26 16 chr1 180216336 180216639 -101977025 - AluJb SINE Alu -6 306 1 266 260 10 0 chr1 180216886 180216986 -101976678 + (TATATG)n Simple_repeat Simple_repeat 3 103 0 1749 218 17 3 chr1 180217075 180217433 -101976231 - MLT1A1 LTR MaLR -2 363 1 407 285 0 31 chr1 180218350 180218483 -101975181 - MIR SINE MIR -42 220 93 2243 99 0 10 chr1 180218513 180218815 -101974849 + AluY SINE Alu 1 299 -12 320 279 74 75 chr1 180218886 180219049 -101974615 - MIR SINE MIR 0 262 92 1703 181 10 0 chr1 180219049 180219353 -101974311 + AluJo SINE Alu 1 307 -5 320 279 74 75 chr1 180219353 180219423 -101974241 - MIR SINE MIR -170 92 23 247 340 10 0 chr1 180219485 180219582 -101974082 - MIR3 SINE MIR -1 207 110 471 257 0 0 chr1 180219927 180220028 -101973636 + MIR3 SINE MIR 66 166 -42 192 261 0 0 chr1 180220855 180220901 -101972763 + MIR SINE MIR 85 130 -78 294 227 91 57 chr1 180222007 180222095 -101971569 + MIR SINE MIR 31 121 -87 3148 115 51 6 chr1 180222506 180222994 -101970670 - MER9 LTR ERVK -1 510 1 238 361 120 0 chr1 180222998 180223131 -101970533 + MIR SINE MIR 49 197 -65 4751 167 60 10 chr1 180223788 180224704 -101968960 - L1MC1 LINE L1 -6 6327 5366 8969 229 7 9 chr1 180224759 180226725 -101966939 - L1P LINE L1 -1409 4737 2774 2189 111 60 23 chr1 180226725 180227076 -101966588 + THE1B LTR MaLR 1 364 0 8969 229 7 9 chr1 180227076 180227222 -101966442 - L1P LINE L1 -3372 2774 2629 5043 139 18 27 chr1 180227224 180227798 -101965866 + L1PA15 LINE L1 4757 5335 -830 2397 82 0 0 chr1 180227798 180228092 -101965572 + AluY SINE Alu 1 294 -17 5043 139 18 27 chr1 180228092 180228916 -101964748 + L1PA15 LINE L1 5335 6148 -17 192 338 71 32 chr1 180229516 180229670 -101963994 - L2 LINE L2 -440 2874 2715 321 383 26 22 chr1 180229902 180230132 -101963532 - MLT1L LTR MaLR -310 305 75 199 338 65 0 chr1 180230245 180230322 -101963342 - L2 LINE L2 -661 2653 2572 2035 152 19 32 chr1 180230444 180230813 -101962851 - THE1B LTR MaLR 0 364 1 11183 105 15 1 chr1 180230813 180232370 -101961294 - THE1B-int LTR MaLR 0 1580 1 2164 119 19 58 chr1 180232372 180232749 -101960915 - THE1B LTR MaLR -2 362 1 301 260 40 0 chr1 180235041 180235141 -101958523 - L1MDa LINE L1 -3568 2972 2869 338 315 91 14 chr1 180235245 180235643 -101958021 - L1MDa LINE L1 -3692 2848 2420 7437 248 41 65 chr1 180235957 180236872 -101956792 - L1MB4 LINE L1 -1 6415 5479 1724 48 5 0 chr1 180236872 180237078 -101956586 - AluY SINE Alu -11 300 94 7437 248 41 65 chr1 180237078 180241881 -101951783 - L1MB4 LINE L1 -937 5479 779 405 302 16 66 chr1 180242641 180242872 -101950792 - MER46C DNA MER2_type -2 336 118 1282 122 73 27 chr1 180242872 180243157 -101950507 - THE1C LTR MaLR 0 375 1 2306 59 0 11 chr1 180247835 180248151 -101945513 - AluY SINE Alu 0 313 1 195 42 0 0 chr1 180249132 180249156 -101944508 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1769 133 4 0 chr1 180249652 180249922 -101943742 + L1PB3 LINE L1 5877 6147 -7 25 0 0 0 chr1 180249922 180249947 -101943717 + AT_rich Low_complexity Low_complexity 1 25 0 261 337 166 15 chr1 180250773 180250972 -101942692 + MIR SINE MIR 8 236 -26 242 259 35 47 chr1 180251363 180251448 -101942216 - MER63 DNA MER1_type -1 1060 977 315 274 14 0 chr1 180251450 180251523 -101942141 - MER63 DNA MER1_type -313 749 676 1629 272 37 12 chr1 180252546 180253189 -101940475 + L1ME2 LINE L1 2451 3109 -3037 * 8480 187 9 12 chr1 180253178 180255831 -101937833 + L1PA16 LINE L1 3418 6057 -109 2100 269 84 33 chr1 180255834 180257431 -101936233 + L1ME2 LINE L1 4000 5673 -493 527 239 43 0 chr1 180257442 180257559 -101936105 + FLAM_A SINE Alu 6 127 -15 548 218 138 11 chr1 180257574 180257787 -101935877 + L1ME2 LINE L1 5657 5894 -270 1758 257 77 30 chr1 180257818 180258932 -101934732 - L1MEc LINE L1 -2938 3277 2113 963 265 39 0 chr1 180258936 180259166 -101934498 + Tigger5 DNA MER2_type 1 239 -2084 479 225 0 0 chr1 180259153 180259242 -101934422 + Tigger5 DNA MER2_type 2235 2323 0 * 1191 302 60 27 chr1 180259243 180259512 -101934152 - L1MEc LINE L1 -4267 2129 1870 195 42 0 0 chr1 180259512 180259536 -101934128 + (TA)n Simple_repeat Simple_repeat 1 24 0 1191 302 60 27 chr1 180259536 180259838 -101933826 - L1MEc LINE L1 -4526 1870 1522 3740 114 9 0 chr1 180259838 180260383 -101933281 + MER41A LTR ERV1 2 551 -3 1191 302 60 27 chr1 180260383 180260617 -101933047 - L1MEc LINE L1 -4874 1522 1297 * 2945 246 34 20 chr1 180260606 180261466 -101932198 + L1MC2 LINE L1 1 824 -5221 2081 230 21 48 chr1 180261466 180262026 -101931638 + LTR27 LTR ERV1 3 547 -89 493 259 7 48 chr1 180262026 180262173 -101931491 + LTR27 LTR ERV1 494 634 -2 2462 219 82 9 chr1 180262178 180262979 -101930685 + L1MC2 LINE L1 821 1700 -4851 4528 177 60 20 chr1 180262983 180263290 -101930374 + L1MC2 LINE L1 5699 5992 -770 2522 56 0 0 chr1 180263290 180263592 -101930072 - AluY SINE Alu -9 302 1 4528 177 60 20 chr1 180263592 180264147 -101929517 + L1MC2 LINE L1 5992 6609 -153 1702 161 11 4 chr1 180264147 180264421 -101929243 + AluJo SINE Alu 1 276 -36 4528 177 60 20 chr1 180264421 180264551 -101929113 + L1MC2 LINE L1 6609 6732 -30 265 232 42 53 chr1 180264676 180264771 -101928893 - L1MEc LINE L1 -5805 591 498 206 261 14 14 chr1 180264892 180264961 -101928703 + (TTTG)n Simple_repeat Simple_repeat 4 72 0 302 377 27 0 chr1 180265011 180265157 -101928507 - L1MEc LINE L1 -6106 290 141 1774 131 50 21 chr1 180265712 180265995 -101927669 - AluSx SINE Alu -21 291 1 268 348 17 0 chr1 180266516 180266631 -101927033 + L2 LINE L2 3179 3295 -18 609 190 50 124 chr1 180266674 180266916 -101926748 - MER2 DNA MER2_type -25 320 97 6524 98 10 11 chr1 180266998 180268776 -101924888 + L1PA6 LINE L1 57 1835 -4319 3382 43 5 0 chr1 180268776 180269190 -101924474 + L1PA4 LINE L1 5740 6155 0 6524 98 10 11 chr1 180269190 180273429 -101920235 + L1PA6 LINE L1 1835 6148 -6 2749 19 0 6 chr1 180273475 180273788 -101919876 - AluY SINE Alu 0 311 1 278 309 39 44 chr1 180274088 180274269 -101919395 + MER5A DNA MER1_type 10 189 0 26 50 0 0 chr1 180274901 180274941 -101918723 + AT_rich Low_complexity Low_complexity 1 40 0 1668 44 0 5 chr1 180275002 180275207 -101918457 + L1PA5 LINE L1 5938 6141 -13 2928 176 9 55 chr1 180275450 180275490 -101918174 - MLT2B3 LTR ERVL 0 554 514 558 43 0 0 chr1 180275490 180275559 -101918105 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 2928 176 9 55 chr1 180275559 180276099 -101917565 - MLT2B3 LTR ERVL -40 514 1 213 65 0 0 chr1 180276248 180276279 -101917385 + (CA)n Simple_repeat Simple_repeat 2 32 0 235 261 0 15 chr1 180277032 180277097 -101916567 - HAL1 LINE L1 -884 1623 1560 347 295 55 59 chr1 180277117 180277371 -101916293 - MER46C DNA MER2_type -18 320 68 2204 268 60 22 chr1 180277543 180278155 -101915509 - L1PA12 LINE L1 -4577 3004 2354 2580 137 26 16 chr1 180278155 180278585 -101915079 - MER57B LTR ERV1 0 434 1 2204 268 60 22 chr1 180278585 180278752 -101914912 - L1PA12 LINE L1 -5227 2354 2195 1983 115 21 3 chr1 180279010 180279297 -101914367 - AluSp SINE Alu -19 294 3 617 293 68 40 chr1 180279542 180279992 -101913672 - L1PA12 LINE L1 -6397 1188 1 24 0 0 0 chr1 180280070 180280094 -101913570 + AT_rich Low_complexity Low_complexity 1 24 0 415 111 167 0 chr1 180281937 180282009 -101911655 + AluS SINE Alu 1 84 -228 189 0 0 0 chr1 180285636 180285657 -101908007 + (TAA)n Simple_repeat Simple_repeat 2 22 0 214 353 168 12 chr1 180286358 180286525 -101907139 + MIR SINE MIR 11 203 -59 309 231 0 0 chr1 180287071 180287136 -101906528 - MER63 DNA MER1_type -312 748 684 335 293 71 94 chr1 180287246 180287628 -101906036 - L2 LINE L2 -776 2538 2166 225 357 10 10 chr1 180287711 180287809 -101905855 - MIR SINE MIR -63 145 48 42188 40 22 1 chr1 180288679 180294722 -101898942 + L1PA2 LINE L1 1 6170 0 2206 83 7 3 chr1 180295603 180295893 -101897771 - AluY SINE Alu -19 292 2 365 329 132 70 chr1 180296115 180296759 -101896905 + L1MEc LINE L1 852 1535 -5603 264 298 42 53 chr1 180296852 180297114 -101896550 + L1MEc LINE L1 1343 1601 -5258 1968 235 51 24 chr1 180297156 180297837 -101895827 + L1M1 LINE L1 2749 3448 -4117 2954 209 44 42 chr1 180297841 180298396 -101895268 + L1M1 LINE L1 3620 4180 -3385 1480 151 18 55 chr1 180298396 180298706 -101894958 - AluJb SINE Alu 0 320 21 2954 209 44 42 chr1 180298706 180299103 -101894561 + L1M1 LINE L1 4180 4575 -2990 254 317 37 12 chr1 180299133 180299294 -101894370 - L1M4 LINE L1 -3641 2505 2341 358 288 38 12 chr1 180299933 180300093 -101893571 - MER46C DNA MER2_type -6 332 169 566 201 0 6 chr1 180300097 180300256 -101893408 - L1M4 LINE L1 -2974 3172 3015 3438 111 16 4 chr1 180300416 180300921 -101892743 - MER9 LTR ERVK 0 511 1 223 178 0 0 chr1 180301674 180301719 -101891945 + A-rich Low_complexity Low_complexity 1 45 0 2333 88 3 3 chr1 180302767 180303074 -101890590 - AluY SINE Alu -4 307 1 237 362 85 14 chr1 180303604 180303745 -101889919 + L2 LINE L2 3103 3253 -19 905 274 48 43 chr1 180303773 180303816 -101889848 + L1M4 LINE L1 1085 1126 -5077 2112 109 14 3 chr1 180303816 180304110 -101889554 + AluSp SINE Alu 1 297 -16 905 274 48 43 chr1 180304110 180304669 -101888995 + L1M4 LINE L1 1126 1680 -4523 1932 108 20 3 chr1 180304672 180304967 -101888697 - L1PA12 LINE L1 -208 5960 5661 23 54 0 0 chr1 180305146 180305183 -101888481 + AT_rich Low_complexity Low_complexity 1 37 0 224 278 37 65 chr1 180305941 180306049 -101887615 + L2 LINE L2 3148 3252 -20 1194 115 0 0 chr1 180307509 180307692 -101885972 + AluSq SINE Alu 129 311 0 8332 188 26 17 chr1 180307699 180309567 -101884097 + L1M4 LINE L1 3168 5052 -1158 429 252 34 25 chr1 180309566 180309685 -101883979 + L1MA8 LINE L1 14 133 -7432 * 8549 172 7 16 chr1 180309682 180311162 -101882502 + L1MA8 LINE L1 1099 2564 -5001 3444 114 11 13 chr1 180311171 180311705 -101881959 + L1PA13 LINE L1 5623 6155 -8 5477 165 28 21 chr1 180311709 180313871 -101879793 + L1MA8 LINE L1 2749 4924 -2641 2889 200 27 14 chr1 180313871 180314073 -101879591 + L1MA8 LINE L1 7000 7198 -512 231 36 0 0 chr1 180314073 180314101 -101879563 + (TA)n Simple_repeat Simple_repeat 1 28 0 2889 200 27 14 chr1 180314101 180314597 -101879067 + L1MA8 LINE L1 7198 7708 -2 203 303 26 0 chr1 180315128 180315204 -101878460 + L2 LINE L2 3219 3296 -17 22 0 0 0 chr1 180315578 180315600 -101878064 + AT_rich Low_complexity Low_complexity 1 22 0 724 205 73 0 chr1 180316258 180316409 -101877255 - FAM SINE Alu -13 162 1 362 262 109 14 chr1 180317152 180317437 -101876227 + L1M4 LINE L1 5178 5481 -743 240 250 143 36 chr1 180318189 180318273 -101875391 - MIR SINE MIR -97 111 19 24 32 0 0 chr1 180318310 180318341 -101875323 + AT_rich Low_complexity Low_complexity 1 31 0 576 291 73 58 chr1 180318453 180318780 -101874884 + L2 LINE L2 2967 3298 -15 2187 133 30 14 chr1 180319371 180319738 -101873926 + THE1C LTR MaLR 3 375 0 9072 125 41 7 chr1 180319739 180321214 -101872450 + THE1C-int LTR MaLR 17 1542 -38 2128 144 11 14 chr1 180321214 180321576 -101872088 + THE1C LTR MaLR 15 375 0 1020 204 127 47 chr1 180322439 180322777 -101870887 + MLT1A1 LTR MaLR 1 365 0 183 341 53 53 chr1 180323928 180324098 -101869566 - L2 LINE L2 -534 2780 2611 223 341 23 11 chr1 180324102 180324190 -101869474 + MIR SINE MIR 19 107 -155 575 194 103 24 chr1 180324195 180324360 -101869304 + MLT1A2 LTR MaLR 1 178 -196 471 80 0 0 chr1 180324361 180324410 -101869254 + (TC)n Simple_repeat Simple_repeat 2 53 -23 261 0 0 0 chr1 180324410 180324439 -101869225 + (CA)n Simple_repeat Simple_repeat 1 29 0 471 80 0 0 chr1 180324439 180324464 -101869200 + (TC)n Simple_repeat Simple_repeat 52 76 0 669 231 35 39 chr1 180324464 180324667 -101868997 + MLT1A2 LTR MaLR 173 374 0 195 279 108 45 chr1 180324671 180324782 -101868882 + MIR SINE MIR 129 246 -16 270 0 0 0 chr1 180325227 180325257 -101868407 + (ATG)n Simple_repeat Simple_repeat 2 31 0 1924 105 0 0 chr1 180325274 180325521 -101868143 - AluSg SINE Alu -26 284 38 265 178 0 0 chr1 180325607 180325652 -101868012 - MER63 DNA MER1_type -116 720 676 888 227 196 0 chr1 180325658 180326116 -101867548 - L1MCb LINE L1 -4009 2555 2008 1741 224 52 63 chr1 180326118 180326476 -101867188 - L1MCb LINE L1 -4762 1802 1441 1519 225 59 82 chr1 180326476 180327102 -101866562 + LTR9 LTR ERV1 1 612 0 1741 224 52 63 chr1 180327102 180327801 -101865863 - L1MCb LINE L1 -5123 1441 733 318 286 129 33 chr1 180327798 180328287 -101865377 + L1M4 LINE L1 3237 3772 -2374 * 255 274 13 51 chr1 180328412 180328569 -101865095 + L1M4 LINE L1 3700 3850 -2296 2130 158 39 3 chr1 180328853 180329239 -101864425 - MER57A LTR ERV1 -3 400 1 573 330 29 0 chr1 180329338 180329547 -101864117 - MER58A DNA MER1_type -4 220 6 388 254 49 52 chr1 180330479 180330767 -101862897 + MER34B LTR ERV1 279 565 0 356 113 0 84 chr1 180332195 180332266 -101861398 - L1PA16 LINE L1 -323 5840 5776 1522 199 32 0 chr1 180332266 180332572 -101861092 + L1PA16 LINE L1 5838 6163 -3 358 309 24 0 chr1 180333230 180333395 -101860269 + (TA)n Simple_repeat Simple_repeat 2 170 0 30 59 0 0 chr1 180333429 180333480 -101860184 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 180333990 180334014 -101859650 + AT_rich Low_complexity Low_complexity 1 24 0 445 296 57 40 chr1 180334202 180334503 -101859161 - MER46C DNA MER2_type -30 308 3 392 271 148 39 chr1 180334522 180334725 -101858939 - HAL1 LINE L1 -966 1541 1317 1742 145 0 25 chr1 180334815 180335097 -101858567 - AluSq SINE Alu -6 307 33 243 291 87 52 chr1 180335169 180335341 -101858323 - L2 LINE L2 -177 3095 2918 2378 28 38 0 chr1 180336167 180336454 -101857210 - L1PA4 LINE L1 -8 6147 5850 3244 39 35 15 chr1 180336454 180336914 -101856750 + L1P LINE L1 3652 4120 -2026 2463 49 7 3 chr1 180337753 180338057 -101855607 + AluY SINE Alu 1 305 -6 23 33 0 0 chr1 180338822 180338852 -101854812 + AT_rich Low_complexity Low_complexity 1 30 0 314 326 116 73 chr1 180339610 180340033 -101853631 + L2 LINE L2 2832 3272 0 2360 98 0 7 chr1 180340040 180340345 -101853319 + AluSx SINE Alu 10 312 0 21 0 0 0 chr1 180344219 180344240 -101849424 + AT_rich Low_complexity Low_complexity 1 21 0 252 332 67 47 chr1 180345891 180346084 -101847580 - MIR SINE MIR -18 244 48 405 0 0 0 chr1 180346637 180346682 -101846982 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 2140 205 39 14 chr1 180347649 180348142 -101845522 - LTR22 LTR ERVK -4 505 1 22056 100 7 2 chr1 180348144 180349471 -101844193 - HERVK22 LTR ERVK -2 6835 5516 3790 23 0 0 chr1 180349471 180349913 -101843751 - L1PA3 LINE L1 0 6155 5714 22056 100 7 2 chr1 180349913 180351751 -101841913 - HERVK22 LTR ERVK -1321 5516 3655 385 94 0 0 chr1 180351750 180351803 -101841861 - HERVK22 LTR ERVK -4292 2545 2493 * 450 150 0 12 chr1 180351795 180351875 -101841789 - HERVK22 LTR ERVK -3930 2907 2829 * 834 181 21 0 chr1 180351874 180352018 -101841646 - HERVK22 LTR ERVK -4364 2473 2327 189 0 0 0 chr1 180352198 180352219 -101841445 + (T)n Simple_repeat Simple_repeat 1 21 0 2232 143 36 8 chr1 180352437 180352829 -101840835 - HERVK22 LTR ERVK -6096 741 339 40675 37 21 1 chr1 180352830 180358860 -101834804 + L1PA2 LINE L1 1 6155 0 26 0 0 0 chr1 180358862 180358888 -101834776 + AT_rich Low_complexity Low_complexity 1 26 0 2311 111 8 17 chr1 180358888 180359239 -101834425 - HERVK22 LTR ERVK -6487 350 3 2011 211 53 20 chr1 180359246 180359735 -101833929 - LTR22 LTR ERVK -4 505 1 25 0 0 0 chr1 180360875 180360900 -101832764 + AT_rich Low_complexity Low_complexity 1 25 0 261 352 47 0 chr1 180361226 180361354 -101832310 - MIR SINE MIR -58 204 71 11226 252 41 22 chr1 180361504 180367216 -101826448 + L1PA15 LINE L1 7 5840 -1744 320 271 98 8 chr1 180367341 180367463 -101826201 - MIR SINE MIR -30 232 100 4254 169 15 4 chr1 180367497 180369154 -101824510 + L1PA15 LINE L1 5890 7604 -6 1224 152 43 23 chr1 180370394 180370651 -101823013 - L1PB4 LINE L1 -16 6140 5879 223 347 51 23 chr1 180370871 180371047 -101822617 - MIR SINE MIR -15 247 67 21 36 0 0 chr1 180372059 180372087 -101821577 + AT_rich Low_complexity Low_complexity 1 28 0 221 319 122 27 chr1 180372768 180372956 -101820708 + L2 LINE L2 2936 3141 -172 354 45 0 0 chr1 180373601 180373645 -101820019 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr1 180375339 180375367 -101818297 + AT_rich Low_complexity Low_complexity 1 28 0 284 293 37 0 chr1 180375743 180375825 -101817839 - L2 LINE L2 -919 2395 2311 256 115 0 33 chr1 180376935 180376996 -101816668 + (TA)n Simple_repeat Simple_repeat 1 59 0 352 351 30 0 chr1 180377277 180377408 -101816256 + MER91A DNA MER1_type 26 160 -36 210 361 28 19 chr1 180377763 180377871 -101815793 - MIR SINE MIR -71 191 83 310 270 45 0 chr1 180377990 180378101 -101815563 + L1MCc LINE L1 25 140 -6283 242 330 51 42 chr1 180378386 180378504 -101815160 - MIR3 SINE MIR -16 192 74 2496 176 24 54 chr1 180379211 180379784 -101813880 - L1MB1 LINE L1 -1 6167 5612 1924 173 3 6 chr1 180379790 180380131 -101813533 - L1PA15 LINE L1 -1 6815 6476 4426 75 31 15 chr1 180380131 180381149 -101812515 + MER11A LTR ERVK 2 1266 0 1430 135 24 66 chr1 180381149 180381287 -101812377 - L1PA15 LINE L1 -335 6482 6361 1876 135 0 4 chr1 180381287 180381568 -101812096 + AluSq SINE Alu 34 313 0 1430 135 24 66 chr1 180381568 180381718 -101811946 - L1PA15 LINE L1 -456 6361 6206 372 259 0 0 chr1 180381716 180381801 -101811863 + L1P LINE L1 4901 4985 -1161 * 14782 234 22 14 chr1 180381809 180386633 -101807031 - L1PA15 LINE L1 -609 6207 1323 1057 332 46 13 chr1 180386627 180387022 -101806642 - L1PA15 LINE L1 -6165 622 215 * 887 155 0 30 chr1 180387024 180387192 -101806472 - L1M3 LINE L1 -728 5606 5444 * 1635 224 56 13 chr1 180387191 180387868 -101805796 - L1M4 LINE L1 -585 5593 4888 1572 231 40 8 chr1 180387898 180388275 -101805389 + MLT1C LTR MaLR 77 465 -2 2337 211 39 91 chr1 180388276 180389020 -101804644 + MLT1C-int LTR MaLR 4 708 -663 1506 243 31 6 chr1 180389066 180389424 -101804240 + MLT1C-int LTR MaLR 1005 1371 0 1789 263 36 9 chr1 180389431 180389879 -101803785 + MLT1C LTR MaLR 8 467 0 2064 194 21 32 chr1 180390451 180390828 -101802836 - L1MA8 LINE L1 -3 6288 5917 1699 164 59 54 chr1 180390828 180391201 -101802463 + THE1C LTR MaLR 1 375 0 2064 194 21 32 chr1 180391201 180391349 -101802315 - L1MA8 LINE L1 -374 5917 5769 198 0 0 0 chr1 180391370 180391392 -101802272 + (T)n Simple_repeat Simple_repeat 1 22 0 618 130 0 0 chr1 180391569 180391661 -101802003 + AluSg/x SINE Alu 211 302 -8 1914 149 4 0 chr1 180391666 180391971 -101801693 + AluSq SINE Alu 1 306 0 231 36 0 0 chr1 180392284 180392312 -101801352 + (CA)n Simple_repeat Simple_repeat 1 28 0 954 120 0 0 chr1 180392316 180392449 -101801215 - MER49 LTR ERV1 -104 819 687 2437 133 18 10 chr1 180392449 180392839 -101800825 + THE1C-int LTR MaLR 1184 1576 -4 2158 113 62 17 chr1 180392843 180393197 -101800467 + THE1C LTR MaLR 1 370 -5 3980 144 10 55 chr1 180393201 180393601 -101800063 - MER49 LTR ERV1 -232 691 335 6243 181 18 3 chr1 180393601 180394297 -101799367 - L1PA14 LINE L1 -2 6159 5475 2035 146 0 13 chr1 180394297 180394613 -101799051 + AluSx SINE Alu 1 312 0 6243 181 18 3 chr1 180394613 180395940 -101797724 - L1PA14 LINE L1 -686 5475 4128 3980 144 10 55 chr1 180395940 180396254 -101797410 - MER49 LTR ERV1 -588 335 9 2146 61 3 54 chr1 180396671 180396986 -101796678 - AluY SINE Alu 0 300 1 2471 147 18 82 chr1 180397235 180397794 -101795870 - L1MA8 LINE L1 -520 5780 5258 1476 214 19 0 chr1 180397788 180398105 -101795559 + L1MA8 LINE L1 4927 5249 -897 * 686 135 0 10 chr1 180399928 180400032 -101793632 + MSTB LTR MaLR 32 134 -292 285 233 33 0 chr1 180400644 180400734 -101792930 - L1MA10 LINE L1 -1 6333 6241 1186 136 31 0 chr1 180400789 180400980 -101792684 + MSTB LTR MaLR 3 199 -227 234 247 144 21 chr1 180401234 180401331 -101792333 + L1M LINE L1 5306 5414 -764 188 253 41 110 chr1 180401689 180401835 -101791829 - MIR SINE MIR -12 250 115 220 342 26 31 chr1 180402232 180402337 -101791327 - MIR SINE MIR -97 111 2 453 285 73 78 chr1 180402503 180402847 -101790817 + L2 LINE L2 2967 3308 -5 2453 49 0 0 chr1 180403718 180404025 -101789639 - AluY SINE Alu 0 307 1 822 189 0 0 chr1 180404252 180404384 -101789280 + FLAM_C SINE Alu 1 132 -1 1876 146 50 0 chr1 180404483 180404764 -101788900 + AluSx SINE Alu 1 295 -17 1012 236 132 22 chr1 180405017 180405335 -101788329 + MLT1A1 LTR MaLR 13 365 0 2118 203 23 108 chr1 180406190 180406800 -101786864 - LTR6A LTR ERV1 0 564 1 194 366 14 0 chr1 180407508 180407579 -101786085 + MIR SINE MIR 9 80 -182 893 263 78 25 chr1 180407611 180407892 -101785772 + MLT1A2 LTR MaLR 1 296 -78 693 216 7 7 chr1 180409712 180409865 -101783799 - L1PB4 LINE L1 -2 6154 6002 207 213 0 93 chr1 180410393 180410468 -101783196 + L3b LINE CR1 1279 1346 -237 2121 121 3 7 chr1 180411160 180411457 -101782207 + AluSx SINE Alu 1 296 -16 331 319 15 0 chr1 180411486 180411621 -101782043 + (TA)n Simple_repeat Simple_repeat 1 137 0 21 71 0 0 chr1 180411644 180411686 -101781978 + AT_rich Low_complexity Low_complexity 1 42 0 412 305 38 42 chr1 180412375 180412611 -101781053 - MER46C DNA MER2_type -29 309 75 664 198 28 4 chr1 180412620 180412874 -101780790 - LTR10B LTR ERV1 0 547 190 316 288 127 24 chr1 180413007 180413212 -101780452 - HAL1 LINE L1 -965 1542 1317 2112 119 10 0 chr1 180413226 180413528 -101780136 - AluY SINE Alu -6 305 1 21 36 0 0 chr1 180413583 180413611 -101780053 + AT_rich Low_complexity Low_complexity 1 28 0 198 339 51 46 chr1 180413662 180413857 -101779807 - L2 LINE L2 -182 3090 2895 194 62 31 0 chr1 180417510 180417542 -101776122 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 23 0 0 0 chr1 180417642 180417665 -101775999 + AT_rich Low_complexity Low_complexity 1 23 0 2090 120 0 0 chr1 180417678 180417962 -101775702 - AluSx SINE Alu -28 284 1 24 32 0 0 chr1 180419299 180419330 -101774334 + AT_rich Low_complexity Low_complexity 1 31 0 2269 75 14 10 chr1 180419521 180419813 -101773851 - AluSc SINE Alu -16 293 1 243 0 0 0 chr1 180420901 180420928 -101772736 + (TG)n Simple_repeat Simple_repeat 1 27 0 5525 86 3 29 chr1 180421156 180421996 -101771668 - L1PB1 LINE L1 -1 6150 5331 2555 42 0 3 chr1 180421996 180422303 -101771361 - AluY SINE Alu -5 306 1 5525 86 3 29 chr1 180422303 180422333 -101771331 - L1PB1 LINE L1 -820 5331 5302 4306 70 3 0 chr1 180422336 180422911 -101770753 - LTR10C LTR ERV1 -4 587 11 4822 289 53 43 chr1 180422917 180425180 -101768484 - LTR10C-int LTR ERV1 -2 6647 4363 902 149 16 5 chr1 180425365 180425553 -101768111 - LTR10C-int LTR ERV1 -2316 3270 3081 14104 161 73 21 chr1 180425553 180426323 -101767341 - L1PBa LINE L1 -823 6039 5311 2393 99 0 3 chr1 180426323 180426637 -101767027 - AluSq SINE Alu 0 313 1 14104 161 73 21 chr1 180426637 180429716 -101763948 - L1PBa LINE L1 -1551 5311 1803 2294 94 0 3 chr1 180429716 180430015 -101763649 - AluSq SINE Alu -14 299 2 14104 161 73 21 chr1 180430015 180431767 -101761897 - L1PBa LINE L1 -5059 1803 144 214 339 23 46 chr1 180432341 180432471 -101761193 - L2 LINE L2 -562 2752 2626 398 271 99 42 chr1 180433495 180433687 -101759977 - MIR SINE MIR -12 250 48 200 337 91 63 chr1 180434518 180434770 -101758894 + L2 LINE L2 2846 3104 -168 329 322 41 29 chr1 180436188 180436359 -101757305 - MIR SINE MIR -19 243 71 279 355 54 25 chr1 180436378 180436581 -101757083 - MIR SINE MIR -52 210 2 228 371 35 20 chr1 180437938 180438135 -101755529 - MIR SINE MIR -15 247 48 1732 173 0 7 chr1 180438419 180438697 -101754967 - AluJo SINE Alu -36 276 1 2142 121 7 0 chr1 180439377 180439674 -101753990 - AluSx SINE Alu -13 299 1 272 269 81 16 chr1 180439958 180440109 -101753555 + L1ME LINE L1 5515 5676 -494 469 304 98 44 chr1 180444093 180444297 -101749367 - MIR SINE MIR 0 262 48 479 299 98 44 chr1 180448250 180448454 -101745210 - MIR SINE MIR 0 262 48 213 271 167 0 chr1 180454070 180454166 -101739498 + MIR SINE MIR 61 172 -90 21 57 0 0 chr1 180455084 180455119 -101738545 + AT_rich Low_complexity Low_complexity 1 35 0 308 385 85 0 chr1 180455341 180455471 -101738193 + MER91A DNA MER1_type 20 160 -36 274 327 33 67 chr1 180455843 180455993 -101737671 - MIR SINE MIR -72 190 46 2074 129 33 3 chr1 180456081 180456414 -101737250 - MER61A LTR ERV1 0 343 1 5763 95 61 5 chr1 180456414 180457301 -101736363 - MER61A-int LTR ERV1 0 5217 4281 5604 77 2 22 chr1 180457300 180458106 -101735558 - MER61A-int LTR ERV1 -1099 4118 3329 * 2210 112 17 0 chr1 180458107 180458401 -101735263 + AluSx SINE Alu 1 299 -13 1543 175 9 35 chr1 180458410 180458752 -101734912 - MER61A-int LTR ERV1 -4884 333 1 2161 131 27 3 chr1 180458752 180459087 -101734577 - MER61A LTR ERV1 0 343 1 233 29 29 0 chr1 180459285 180459319 -101734345 + (CA)n Simple_repeat Simple_repeat 2 36 0 216 135 0 0 chr1 180459319 180459356 -101734308 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 288 333 41 65 chr1 180459387 180459510 -101734154 - MIR3 SINE MIR -22 186 67 247 180 0 0 chr1 180460119 180460169 -101733495 - L1ME LINE L1 -467 5723 5674 1952 264 42 2 chr1 180460486 180461088 -101732576 - L1ME1 LINE L1 -58 6108 5483 1491 215 75 51 chr1 180461097 180461433 -101732231 - L1ME LINE L1 -567 5668 5342 2190 92 0 39 chr1 180461433 180461739 -101731925 - AluSx SINE Alu -18 294 1 1491 215 75 51 chr1 180461739 180462273 -101731391 - L1ME LINE L1 -893 5342 4797 478 295 5 23 chr1 180462264 180462481 -101731183 - L1ME LINE L1 -4320 2076 1864 * 2321 165 28 7 chr1 180463808 180464232 -101729432 + Tigger2a DNA MER2_type 1 433 -1 2030 134 7 3 chr1 180464494 180464799 -101728865 - AluSq SINE Alu -7 306 1 557 304 154 10 chr1 180466948 180467343 -101726321 + L1ME4a LINE L1 5628 6079 -42 576 300 65 5 chr1 180468167 180468367 -101725297 + LTR16A LTR ERVL 230 441 -9 419 228 37 117 chr1 180468756 180468909 -101724755 + L1ME LINE L1 5368 5532 -632 1809 158 7 24 chr1 180468909 180469207 -101724457 + AluJo SINE Alu 19 311 -1 419 228 37 117 chr1 180469207 180469425 -101724239 + L1ME LINE L1 5532 5724 -440 2320 99 0 7 chr1 180469573 180469877 -101723787 - AluSg SINE Alu -8 302 1 343 334 129 30 chr1 180469878 180470377 -101723287 + L2 LINE L2 2777 3312 -1 507 328 63 38 chr1 180470527 180470814 -101722850 + L3 LINE CR1 1237 1530 -47 2178 125 0 0 chr1 180471537 180471840 -101721824 - AluSq SINE Alu -10 303 1 26 30 0 0 chr1 180473623 180473656 -101720008 + AT_rich Low_complexity Low_complexity 1 33 0 2232 104 0 10 chr1 180473784 180474103 -101719561 + AluSq SINE Alu 1 313 0 361 255 0 10 chr1 180474123 180474225 -101719439 - L1MA10 LINE L1 -1 6333 6233 * 1038 249 35 5 chr1 180474218 180474595 -101719069 - L1M4 LINE L1 -994 5152 4765 1150 358 82 2 chr1 180474597 180475464 -101718200 + L1M4 LINE L1 4215 5150 -996 351 0 0 0 chr1 180475565 180475604 -101718060 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr1 180475640 180475664 -101718000 + (GA)n Simple_repeat Simple_repeat 2 25 0 292 241 130 0 chr1 180475707 180475815 -101717849 + L1M LINE L1 5292 5413 -771 290 304 59 59 chr1 180477124 180477430 -101716234 - MER41E LTR ERV1 -59 453 148 243 303 78 113 chr1 180477837 180478068 -101715596 - L2 LINE L2 0 3272 3050 823 275 108 7 chr1 180478105 180478400 -101715264 + L2 LINE L2 2989 3313 0 709 258 97 71 chr1 180478719 180479505 -101714159 + HAL1 LINE L1 486 1291 -1216 4040 129 61 14 chr1 180479575 180480294 -101713370 - L1MC1 LINE L1 -1 6332 5580 590 174 289 20 chr1 180480587 180480736 -101712928 - MER5A DNA MER1_type 0 189 1 398 234 12 35 chr1 180481925 180482096 -101711568 - L1M4 LINE L1 -2976 3170 3004 * 821 208 35 0 chr1 180482071 180482273 -101711391 + HAL1 LINE L1 1391 1599 -908 910 157 0 58 chr1 180482334 180482506 -101711158 - MLT1A1 LTR MaLR 0 365 204 296 224 14 0 chr1 180482522 180482591 -101711073 - FLAM_A SINE Alu -5 128 68 1005 187 0 42 chr1 180482618 180482832 -101710832 - MLT1A1 LTR MaLR -155 210 6 319 270 90 36 chr1 180482847 180482958 -101710706 + HAL1 LINE L1 1800 1916 -591 527 209 46 109 chr1 180483063 180483413 -101710251 + HAL1 LINE L1 1993 2320 -187 322 271 57 57 chr1 180483415 180483555 -101710109 + HAL1 LINE L1 2367 2506 -1 454 277 82 33 chr1 180484058 180484242 -101709422 - MIR SINE MIR -67 195 3 1740 174 0 10 chr1 180484518 180484806 -101708858 + AluJo SINE Alu 1 285 -27 477 34 0 0 chr1 180484807 180484866 -101708798 + (CA)n Simple_repeat Simple_repeat 2 60 0 261 339 50 46 chr1 180485115 180485333 -101708331 - LTR67 LTR ERVL -264 293 75 864 344 35 19 chr1 180485402 180485888 -101707776 - L2 LINE L2 -834 2480 1987 913 130 124 5 chr1 180485898 180486083 -101707581 + L1MA9 LINE L1 6101 6307 -5 180 299 161 35 chr1 180486473 180486647 -101707017 + L2 LINE L2 2882 3077 -195 282 250 240 50 chr1 180486714 180486914 -101706750 + MIR SINE MIR 25 262 0 226 340 0 0 chr1 180486953 180487006 -101706658 + L2 LINE L2 3136 3188 -84 22 56 0 0 chr1 180487506 180487542 -101706122 + AT_rich Low_complexity Low_complexity 1 36 0 2208 112 7 0 chr1 180487607 180487903 -101705761 - AluSx SINE Alu -14 298 1 2534 132 52 0 chr1 180488592 180488995 -101704669 + MSTC LTR MaLR 5 428 0 638 325 19 10 chr1 180489203 180489409 -101704255 - MIR SINE MIR -43 219 12 971 246 100 28 chr1 180489907 180490297 -101703367 + LTR16A LTR ERVL 25 442 -8 395 263 38 102 chr1 180492646 180492774 -101700890 - MIR SINE MIR -87 175 60 2042 126 0 7 chr1 180492774 180493107 -101700557 + AluSx SINE Alu 1 331 0 395 263 38 102 chr1 180493107 180493163 -101700501 - MIR SINE MIR -202 60 2 2028 113 3 36 chr1 180493713 180493730 -101699934 - AluSc SINE Alu -17 292 276 267 103 0 0 chr1 180493730 180493769 -101699895 + (TA)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr1 180493770 180493795 -101699869 + (GA)n Simple_repeat Simple_repeat 2 26 0 2028 113 3 36 chr1 180493795 180494076 -101699588 - AluSc SINE Alu -32 277 2 25 51 0 0 chr1 180494076 180494115 -101699549 + AT_rich Low_complexity Low_complexity 1 39 0 505 111 0 12 chr1 180494248 180494329 -101699335 - MADE1 DNA Mariner 0 80 1 2232 126 0 3 chr1 180494452 180494761 -101698903 + AluSx SINE Alu 1 308 -4 584 303 75 0 chr1 180496287 180496475 -101697189 + MIR SINE MIR 53 254 -8 24 85 0 0 chr1 180496496 180496555 -101697109 + AT_rich Low_complexity Low_complexity 1 59 0 883 288 13 42 chr1 180497585 180497839 -101695825 + MIR SINE MIR 8 256 -6 291 186 43 14 chr1 180498302 180498372 -101695292 - L2 LINE L2 -41 3272 3201 882 221 9 33 chr1 180498389 180498602 -101695062 - MER3 DNA MER1_type -1 208 1 528 275 124 5 chr1 180498768 180498961 -101694703 - L2 LINE L2 -5 3308 3093 232 340 130 50 chr1 180498983 180499468 -101694196 - L2 LINE L2 -2065 1249 726 210 321 0 12 chr1 180500436 180500517 -101693147 + GA-rich Low_complexity Low_complexity 1 80 0 199 345 83 0 chr1 180500748 180500832 -101692832 + MIR SINE MIR 38 128 -80 1824 111 63 74 chr1 180501107 180501485 -101692179 + THE1C LTR MaLR 1 374 -1 10641 113 26 6 chr1 180501486 180503032 -101690632 + THE1C-int LTR MaLR 1 1578 -2 1965 124 70 25 chr1 180503037 180503393 -101690271 + THE1C LTR MaLR 4 375 0 345 258 72 0 chr1 180504335 180504432 -101689232 + MER3 DNA MER1_type 51 154 -55 1662 173 49 0 chr1 180504440 180504810 -101688854 + MER3 DNA MER1_type 2236 2623 0 426 255 114 13 chr1 180504812 180504961 -101688703 + MIR SINE MIR 32 195 -67 6006 184 217 3 chr1 180504965 180506410 -101687254 - MER52A LTR ERV1 0 1755 1 341 261 144 0 chr1 180506813 180506924 -101686740 + MIR SINE MIR 65 191 -71 285 29 0 0 chr1 180507333 180507367 -101686297 + (TG)n Simple_repeat Simple_repeat 1 34 0 528 291 55 35 chr1 180507402 180507601 -101686063 - L2 LINE L2 -197 3116 2914 9035 173 16 11 chr1 180507607 180510330 -101683334 + L1PB1 LINE L1 3149 5881 -270 692 123 35 0 chr1 180511397 180511511 -101682153 + L1MB5 LINE L1 6057 6174 0 1534 139 18 50 chr1 180511749 180511849 -101681815 + AluSx SINE Alu 35 137 -175 527 0 16 0 chr1 180511849 180511912 -101681752 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1534 139 18 50 chr1 180511912 180512091 -101681573 + AluSx SINE Alu 137 305 -7 692 304 38 9 chr1 180512137 180512558 -101681106 + L1M4 LINE L1 2156 2588 -3558 219 69 0 0 chr1 180512949 180512978 -101680686 + (TA)n Simple_repeat Simple_repeat 1 29 0 2433 69 0 0 chr1 180512979 180513270 -101680394 - AluY SINE Alu -20 291 1 1608 175 41 0 chr1 180514465 180514734 -101678930 + AluSx SINE Alu 1 280 -32 11609 27 2 0 chr1 180514734 180516871 -101676793 + L1PA4 LINE L1 4015 6155 0 240 59 0 0 chr1 180517781 180517815 -101675849 + (CA)n Simple_repeat Simple_repeat 2 35 0 289 332 46 29 chr1 180517900 180518249 -101675415 - L1MC4 LINE L1 -65 7977 7623 420 286 90 59 chr1 180518435 180518823 -101674841 - L1MC4a LINE L1 -390 7418 7019 226 236 145 4 chr1 180518906 180519020 -101674644 - MLT1I LTR MaLR 0 549 281 561 262 13 0 chr1 180519160 180519309 -101674355 + MLT1I LTR MaLR 259 409 0 931 269 38 100 chr1 180519320 180519769 -101673895 - L1MC4 LINE L1 -813 7027 6626 306 87 0 0 chr1 180519803 180519849 -101673815 + (TG)n Simple_repeat Simple_repeat 1 46 0 202 205 0 0 chr1 180519852 180519891 -101673773 + CT-rich Low_complexity Low_complexity 1 39 0 302 294 40 68 chr1 180520038 180520215 -101673449 - L1MC4a LINE L1 -1224 6584 6413 635 314 14 5 chr1 180520927 180521134 -101672530 - MIR SINE MIR -26 236 28 27 0 0 0 chr1 180521965 180521992 -101671672 + AT_rich Low_complexity Low_complexity 1 27 0 459 280 80 56 chr1 180522182 180522432 -101671232 - MLT1J2 LTR MaLR 0 450 195 275 375 8 23 chr1 180523253 180523381 -101670283 - MIR SINE MIR -58 150 25 363 332 118 0 chr1 180524283 180524470 -101669194 + MER58C DNA MER1_type 7 215 0 458 270 75 19 chr1 180525585 180525744 -101667920 + MIR SINE MIR 21 188 -74 2555 56 0 7 chr1 180526392 180526696 -101666968 + AluY SINE Alu 1 302 -9 734 290 92 14 chr1 180526696 180527065 -101666599 + L1ME3A LINE L1 5554 5951 -219 520 82 106 12 chr1 180527428 180527513 -101666151 + MLT1A1 LTR MaLR 1 93 -272 994 137 95 104 chr1 180527658 180527899 -101665765 + MLT1A1 LTR MaLR 112 350 -15 390 268 84 84 chr1 180527930 180528191 -101665473 + L2 LINE L2 3025 3285 -28 270 0 0 0 chr1 180528289 180528319 -101665345 + (CA)n Simple_repeat Simple_repeat 2 31 0 384 345 116 19 chr1 180528523 180528946 -101664718 + L2 LINE L2 946 1409 -1905 806 261 168 37 chr1 180528992 180529398 -101664266 + MLT1C LTR MaLR 6 464 -3 552 242 93 47 chr1 180529497 180529712 -101663952 + MIR SINE MIR 1 225 -37 1440 316 104 35 chr1 180529747 180530829 -101662835 + L2 LINE L2 1568 2739 -575 309 51 0 0 chr1 180530829 180530868 -101662796 + (CA)n Simple_repeat Simple_repeat 1 39 0 1440 316 104 35 chr1 180530868 180530959 -101662705 + L2 LINE L2 2739 2822 -492 461 339 123 34 chr1 180530983 180531275 -101662389 + L2 LINE L2 2954 3271 -1 237 178 0 0 chr1 180531361 180531406 -101662258 + (TA)n Simple_repeat Simple_repeat 2 46 0 1985 97 0 106 chr1 180532083 180532413 -101661251 + AluSq SINE Alu 2 296 -17 530 324 47 42 chr1 180532802 180533163 -101660501 + L2 LINE L2 1234 1596 -1718 258 32 0 0 chr1 180533189 180533220 -101660444 + (TC)n Simple_repeat Simple_repeat 2 32 0 446 238 30 0 chr1 180533289 180533390 -101660274 + L1MC5 LINE L1 7798 7901 -60 1874 327 92 34 chr1 180533429 180534565 -101659099 + L2 LINE L2 1699 2959 -313 2206 112 3 0 chr1 180534565 180534869 -101658795 + AluSx SINE Alu 1 305 -7 1874 327 92 34 chr1 180534869 180535203 -101658461 + L2 LINE L2 2959 3272 0 208 266 86 55 chr1 180536414 180536542 -101657122 - MIR SINE MIR -123 139 8 182 245 163 20 chr1 180537056 180537154 -101656510 + L2 LINE L2 2666 2777 -537 1779 263 98 37 chr1 180537173 180537390 -101656274 + MER20B DNA MER1_type 1 203 -580 2355 99 0 0 chr1 180537390 180537694 -101655970 + AluSx SINE Alu 1 304 -8 1779 263 98 37 chr1 180537694 180538209 -101655455 + MER20B DNA MER1_type 203 778 -5 1008 256 144 33 chr1 180538212 180538671 -101654993 + L2 LINE L2 2802 3313 0 204 273 216 0 chr1 180538770 180538858 -101654806 - L2 LINE L2 0 3313 3207 369 159 0 14 chr1 180541629 180541698 -101651966 - tRNA-Arg-AGA tRNA tRNA -6 70 3 233 200 0 50 chr1 180542375 180542435 -101651229 + (TG)n Simple_repeat Simple_repeat 1 57 0 440 309 106 18 chr1 180542688 180542963 -101650701 - L3b LINE CR1 -82 1501 1203 378 0 0 0 chr1 180543597 180543639 -101650025 + (CA)n Simple_repeat Simple_repeat 2 43 0 181 244 122 73 chr1 180543794 180543876 -101649788 - L2 LINE L2 -32 3240 3155 218 304 51 0 chr1 180544028 180544107 -101649557 + MIR SINE MIR 72 154 -108 2269 107 0 10 chr1 180545833 180546133 -101647531 + AluSc SINE Alu 1 297 -12 253 325 60 26 chr1 180547925 180548042 -101645622 - MIR SINE MIR -67 141 21 292 357 0 18 chr1 180548337 180548449 -101645215 - MIR SINE MIR -78 130 21 420 213 11 0 chr1 180548500 180548594 -101645070 - L1MA8 LINE L1 -3 6288 6194 787 122 32 0 chr1 180548594 180548717 -101644947 + L1M2 LINE L1 5562 5688 -612 12782 79 10 1 chr1 180548737 180551133 -101642531 - L1PA7 LINE L1 -2 6152 3735 2318 95 0 3 chr1 180551686 180551980 -101641684 + AluSg SINE Alu 1 293 -17 396 315 94 31 chr1 180552145 180552399 -101641265 + L2 LINE L2 1865 2134 -1180 332 257 0 30 chr1 180552488 180552589 -101641075 - MER112 DNA MER1_type -97 163 66 424 283 49 81 chr1 180552624 180552887 -101640777 + L2 LINE L2 2143 2396 -918 2262 97 7 0 chr1 180552887 180553185 -101640479 - AluSx SINE Alu -12 300 1 424 283 49 81 chr1 180553185 180553229 -101640435 + L2 LINE L2 2396 2440 -874 369 0 0 0 chr1 180553561 180553602 -101640062 + (TG)n Simple_repeat Simple_repeat 2 42 0 465 360 125 14 chr1 180553621 180553974 -101639690 - L2 LINE L2 -357 2957 2566 234 91 0 0 chr1 180554228 180554261 -101639403 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 14148 57 8 3 chr1 180554263 180556755 -101636909 - L1PA6 LINE L1 -5 6149 3647 216 277 0 0 chr1 180557363 180557410 -101636254 + L2 LINE L2 3262 3308 -5 1512 203 50 18 chr1 180557690 180558030 -101635634 + MLT1A1 LTR MaLR 15 365 0 22 0 0 0 chr1 180558297 180558319 -101635345 + AT_rich Low_complexity Low_complexity 1 22 0 642 198 71 60 chr1 180558453 180558635 -101635029 - MIR SINE MIR -10 252 69 1351 305 51 43 chr1 180558684 180560102 -101633562 - L1MC4a LINE L1 -747 5399 4533 444 204 0 106 chr1 180560546 180560659 -101633005 + MER8 DNA MER2_type 1 101 -138 520 108 0 27 chr1 180560779 180560853 -101632811 - Tigger2a DNA MER2_type -361 73 2 242 257 89 0 chr1 180561009 180561110 -101632554 + L3b LINE CR1 1178 1287 -296 261 369 167 10 chr1 180561412 180561610 -101632054 - MIR SINE MIR -31 231 3 397 310 121 17 chr1 180562156 180562395 -101631269 + L3b LINE CR1 1122 1385 -198 411 336 83 54 chr1 180562448 180562799 -101630865 - L2 LINE L2 -12 3260 2900 181 0 69 0 chr1 180562801 180562830 -101630834 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 568 225 130 20 chr1 180563255 180563455 -101630209 + MIR SINE MIR 32 253 -9 564 147 84 0 chr1 180563876 180563971 -101629693 - MER81 DNA DNA 0 114 12 300 325 43 8 chr1 180564220 180564337 -101629327 + L2 LINE L2 2659 2779 -535 343 329 146 32 chr1 180564377 180564657 -101629007 + L2 LINE L2 2910 3221 -51 2025 129 3 3 chr1 180565008 180565294 -101628370 + AluSx SINE Alu 2 287 -25 228 178 27 27 chr1 180565304 180565377 -101628287 + (TAAA)n Simple_repeat Simple_repeat 3 75 0 682 291 55 15 chr1 180565505 180565776 -101627888 + MARNA DNA Mariner 137 418 -168 370 343 69 66 chr1 180566054 180566389 -101627275 - L2 LINE L2 -86 3186 2851 573 329 29 21 chr1 180566811 180567051 -101626613 + MIR SINE MIR 8 249 -13 21 36 0 0 chr1 180567269 180567297 -101626367 + AT_rich Low_complexity Low_complexity 1 28 0 205 351 153 35 chr1 180567509 180567711 -101625953 + MIR SINE MIR 22 247 -15 548 290 7 0 chr1 180568830 180568975 -101624689 + MIR3 SINE MIR 63 208 0 187 143 0 0 chr1 180569366 180569394 -101624270 + MIR3 SINE MIR 156 183 -25 180 341 37 0 chr1 180570161 180570243 -101623421 - L3 LINE CR1 0 1577 1493 * 361 309 52 7 chr1 180570238 180570374 -101623290 + MIR3 SINE MIR 67 208 0 241 282 0 0 chr1 180572156 180572241 -101621423 + (TG)n Simple_repeat Simple_repeat 2 86 0 1870 184 36 0 chr1 180577929 180578261 -101615403 + MER2 DNA MER2_type 1 344 0 555 156 0 0 chr1 180578480 180578570 -101615094 + 5S rRNA rRNA 1 90 -31 381 58 0 0 chr1 180582054 180582106 -101611558 + (CA)n Simple_repeat Simple_repeat 1 52 0 524 261 28 0 chr1 180582463 180582605 -101611059 + MIR3 SINE MIR 63 208 0 249 33 0 0 chr1 180584441 180584471 -101609193 + (CAT)n Simple_repeat Simple_repeat 3 32 0 310 193 0 0 chr1 180584771 180584828 -101608836 - L2 LINE L2 0 3313 3257 184 302 162 40 chr1 180585441 180585663 -101608001 + MIR SINE MIR 1 249 -13 266 353 77 56 chr1 180585805 180586357 -101607307 - L2 LINE L2 0 3272 2715 271 300 31 69 chr1 180587237 180587367 -101606297 - L2 LINE L2 -27 3286 3162 367 237 34 25 chr1 180588240 180588358 -101605306 + C-rich Low_complexity Low_complexity 5 123 0 324 283 175 31 chr1 180589149 180589310 -101604354 + MIR SINE MIR 16 190 -63 482 304 72 22 chr1 180589359 180589540 -101604124 + MIR3 SINE MIR 10 199 -9 393 300 88 24 chr1 180590394 180590564 -101603100 + MIR3 SINE MIR 21 201 -7 207 0 0 0 chr1 180591151 180591174 -101602490 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 346 284 52 45 chr1 180592897 180593031 -101600633 + MIR SINE MIR 49 183 -79 944 217 15 0 chr1 180594193 180594391 -101599273 - MER58A DNA MER1_type -3 221 21 410 373 25 0 chr1 180594470 180594631 -101599033 + MIR3 SINE MIR 41 205 -3 319 308 238 7 chr1 180595176 180595319 -101598345 + MIR SINE MIR 37 212 -50 189 299 0 45 chr1 180596021 180596088 -101597576 - L2 LINE L2 -1 3312 3249 530 177 7 27 chr1 180599316 180599463 -101594201 + GA-rich Low_complexity Low_complexity 4 147 0 224 306 62 0 chr1 180600217 180600361 -101593303 + CT-rich Low_complexity Low_complexity 2 154 0 336 188 0 0 chr1 180600488 180600557 -101593107 + (CA)n Simple_repeat Simple_repeat 1 69 0 344 155 14 0 chr1 180602054 180602125 -101591539 + (TG)n Simple_repeat Simple_repeat 1 72 0 206 313 12 50 chr1 180605062 180605142 -101588522 + polypyrimidine Low_complexity Low_complexity 3 79 0 258 32 0 0 chr1 180607037 180607068 -101586596 + (TG)n Simple_repeat Simple_repeat 2 32 0 206 225 0 0 chr1 180608073 180608113 -101585551 + GA-rich Low_complexity Low_complexity 1 40 0 2405 78 3 13 chr1 180609592 180609899 -101583765 - AluSx SINE Alu -7 305 2 886 49 0 0 chr1 180610152 180610254 -101583410 + AluY SINE Alu 199 300 -11 498 348 34 25 chr1 180610644 180610969 -101582695 + L2 LINE L2 2852 3179 -134 207 0 0 0 chr1 180611926 180611949 -101581715 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 1246 264 69 95 chr1 180612555 180612906 -101580758 + L3 LINE CR1 783 1109 -468 1693 197 3 0 chr1 180612906 180613024 -101580640 + AluJb SINE Alu 1 117 -195 369 0 0 0 chr1 180613024 180613065 -101580599 + (CA)n Simple_repeat Simple_repeat 2 42 0 1693 197 3 0 chr1 180613065 180613245 -101580419 + AluJb SINE Alu 117 300 -12 1246 264 69 95 chr1 180613245 180613564 -101580100 + L3 LINE CR1 1109 1435 -142 279 340 32 43 chr1 180613586 180613771 -101579893 - L2 LINE L2 -15 3298 3116 235 321 18 37 chr1 180613837 180613946 -101579718 + L3 LINE CR1 1425 1531 -46 182 271 0 71 chr1 180614820 180614890 -101578774 + MIR SINE MIR 156 220 -42 474 260 175 19 chr1 180615522 180615676 -101577988 + MER5A DNA MER1_type 10 187 -2 2060 99 11 0 chr1 180615933 180616206 -101577458 + AluSx SINE Alu 1 276 -36 180 0 0 0 chr1 180616212 180616232 -101577432 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 412 326 93 56 chr1 180617187 180617713 -101575951 + L2 LINE L2 2720 3261 -11 264 247 27 130 chr1 180617775 180617921 -101575743 - MIR SINE MIR -63 145 15 26 0 0 0 chr1 180618053 180618079 -101575585 + AT_rich Low_complexity Low_complexity 1 26 0 2317 108 0 3 chr1 180618082 180618389 -101575275 - AluSx SINE Alu -6 306 1 29 0 0 0 chr1 180619828 180619857 -101573807 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 180619951 180620001 -101573663 + AT_rich Low_complexity Low_complexity 1 50 0 1815 161 63 6 chr1 180620019 180620354 -101573310 - MLT1A1 LTR MaLR 0 365 12 542 300 159 9 chr1 180620359 180620579 -101573085 + MIR SINE MIR 5 257 -5 184 349 0 16 chr1 180620618 180620671 -101572993 - L3b LINE CR1 0 1583 1532 192 323 0 97 chr1 180620671 180620764 -101572900 + MER5C DNA MER1_type 1 84 -240 324 203 31 0 chr1 180621033 180621097 -101572567 - L3 LINE CR1 -267 1310 1245 2021 123 3 31 chr1 180621304 180621622 -101572042 - AluSq SINE Alu -4 309 1 394 320 39 45 chr1 180621638 180621816 -101571848 - L3 LINE CR1 -369 1208 1032 852 318 0 4 chr1 180622284 180622523 -101571141 + MIR SINE MIR 8 245 -17 30 0 0 0 chr1 180623363 180623393 -101570271 + AT_rich Low_complexity Low_complexity 1 30 0 2347 104 0 3 chr1 180623663 180624009 -101569655 - AluSx SINE Alu 0 312 1 392 307 38 105 chr1 180624227 180624465 -101569199 - L2 LINE L2 -13 3259 3038 311 333 125 57 chr1 180625413 180625837 -101567827 - L2 LINE L2 -403 2911 2459 181 237 53 0 chr1 180625860 180625898 -101567766 + L2 LINE L2 3259 3298 -15 376 237 246 9 chr1 180625965 180626079 -101567585 + MIR3 SINE MIR 51 191 -17 307 252 76 61 chr1 180626907 180627038 -101566626 + MIR3 SINE MIR 4 136 -72 826 274 61 16 chr1 180627106 180627351 -101566313 - MIR SINE MIR -5 257 2 301 290 62 20 chr1 180627577 180627724 -101565940 - MIR3 SINE MIR -1 207 59 236 343 212 0 chr1 180628161 180628260 -101565404 + L2 LINE L2 3134 3253 -19 198 0 0 0 chr1 180628924 180628946 -101564718 + (TAA)n Simple_repeat Simple_repeat 2 23 0 393 366 62 18 chr1 180630469 180630693 -101562971 - MIR SINE MIR -12 250 17 230 277 0 15 chr1 180630743 180630808 -101562856 - L2 LINE L2 -78 3235 3172 238 327 58 19 chr1 180630986 180631090 -101562574 + L3 LINE CR1 1161 1268 -309 212 227 0 0 chr1 180631128 180631172 -101562492 - L2 LINE L2 -27 3286 3243 310 336 19 52 chr1 180631411 180631568 -101562096 + MIR SINE MIR 1 151 -64 308 261 130 95 chr1 180631824 180632023 -101561641 - MLT1K LTR MaLR -64 524 305 2503 56 0 0 chr1 180632023 180632328 -101561336 - AluY SINE Alu -6 305 1 308 261 130 95 chr1 180632328 180632496 -101561168 - MLT1K LTR MaLR -283 305 144 4154 211 68 78 chr1 180632873 180632986 -101560678 + Zaphod DNA AcHobo 1 114 -3917 2205 117 0 10 chr1 180632986 180633324 -101560340 + AluSx SINE Alu 1 312 0 4154 211 68 78 chr1 180633324 180633473 -101560191 + Zaphod DNA AcHobo 114 263 -3768 1040 102 0 6 chr1 180633473 180633640 -101560024 + L1MA5 LINE L1 6134 6299 -1 4154 211 68 78 chr1 180633640 180634734 -101558930 + Zaphod DNA AcHobo 263 1342 -2689 7000 55 11 0 chr1 180634734 180636214 -101557450 - L1PA6 LINE L1 -1 6153 4668 4154 211 68 78 chr1 180636214 180636454 -101557210 + Zaphod DNA AcHobo 1342 1583 -2448 3125 176 51 107 chr1 180636463 180636923 -101556741 + Zaphod DNA AcHobo 2480 2964 -1067 2315 123 0 3 chr1 180636923 180637232 -101556432 + AluSg SINE Alu 1 308 -2 3125 176 51 107 chr1 180637232 180637904 -101555760 + Zaphod DNA AcHobo 2964 3549 -482 1042 189 8 157 chr1 180637905 180638047 -101555617 + AluYb8 SINE Alu 1 56 -262 2195 104 0 3 chr1 180638047 180638344 -101555320 + AluSg SINE Alu 1 296 -14 1042 189 8 157 chr1 180638344 180638571 -101555093 + AluYb8 SINE Alu 56 315 -3 1281 230 71 16 chr1 180638571 180639019 -101554645 + Zaphod DNA AcHobo 3551 4023 -8 336 92 231 0 chr1 180640541 180640606 -101553058 + MADE1 DNA Mariner 1 80 0 417 314 67 90 chr1 180640685 180641061 -101552603 + L2 LINE L2 2600 2966 -348 12925 215 43 25 chr1 180641334 180641708 -101551956 - L1MA7 LINE L1 -11 6484 6118 243 0 0 0 chr1 180641708 180641735 -101551929 + (TG)n Simple_repeat Simple_repeat 2 28 0 12925 215 43 25 chr1 180641735 180643231 -101550433 - L1MA7 LINE L1 -377 6118 4650 1896 132 0 0 chr1 180643231 180643489 -101550175 - AluSg SINE Alu -18 292 35 12925 215 43 25 chr1 180643489 180647686 -101545978 - L1MA7 LINE L1 -1845 4650 3 2400 136 29 26 chr1 180648465 180648883 -101544781 + MSTB LTR MaLR 8 426 0 3638 209 64 140 chr1 180648932 180650849 -101542815 + L1MCa LINE L1 3 2052 -4512 11798 168 59 22 chr1 180650853 180651694 -101541970 + L1PA12 LINE L1 4 813 -6771 1971 125 0 14 chr1 180651694 180652018 -101541646 - AluSx SINE Alu 0 320 1 11798 168 59 22 chr1 180652018 180653481 -101540183 + L1PA12 LINE L1 813 2221 -5363 1845 100 0 32 chr1 180653481 180653761 -101539903 + L1PA12 LINE L1 5898 6168 0 11798 168 59 22 chr1 180653761 180654480 -101539184 + L1PA12 LINE L1 2221 2912 -4672 1955 155 10 7 chr1 180654480 180654784 -101538880 + AluSx SINE Alu 1 305 -7 11798 168 59 22 chr1 180654784 180655321 -101538343 + L1PA12 LINE L1 2912 4158 -3426 373 19 0 0 chr1 180655314 180655366 -101538298 + L1P LINE L1 4569 4620 -2964 * 13001 140 34 11 chr1 180655366 180657669 -101535995 - Tigger1 DNA MER2_type -62 2356 1 240 337 42 11 chr1 180658476 180658571 -101535093 - MIR3 SINE MIR -107 101 4 21 0 0 0 chr1 180658869 180658890 -101534774 + AT_rich Low_complexity Low_complexity 1 21 0 4004 35 0 4 chr1 180658890 180659370 -101534294 - L1PA3 LINE L1 -1 6154 5677 2299 47 29 0 chr1 180659530 180659839 -101533825 - AluY SINE Alu 0 317 1 22 35 0 0 chr1 180660726 180660755 -101532909 + AT_rich Low_complexity Low_complexity 1 29 0 4287 189 32 26 chr1 180660848 180662163 -101531501 + L1MB4 LINE L1 4848 6179 -1 272 188 0 29 chr1 180662167 180662236 -101531428 + L1MC4 LINE L1 7975 8041 -1 425 271 36 7 chr1 180663473 180663614 -101530050 - MIR SINE MIR -68 140 8 3994 189 43 32 chr1 180663652 180664162 -101529502 - L1MA9 LINE L1 -38 6274 5771 186 43 0 0 chr1 180664162 180664185 -101529479 + (TG)n Simple_repeat Simple_repeat 2 24 0 3994 189 43 32 chr1 180664185 180664906 -101528758 - L1MA9 LINE L1 -541 5771 5031 * 6395 19 5 0 chr1 180664905 180665685 -101527979 - L1PA4 LINE L1 0 6155 5372 688 192 19 6 chr1 180665660 180665816 -101527848 - L1MA9 LINE L1 -1082 5064 4907 * 403 228 21 69 chr1 180666124 180666269 -101527395 - MIR SINE MIR -65 197 60 332 48 0 0 chr1 180667271 180667313 -101526351 + MER4E LTR ERV1 653 694 -72 36 70 0 0 chr1 180667386 180667457 -101526207 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr1 180667825 180667846 -101525818 + AT_rich Low_complexity Low_complexity 1 21 0 1229 230 62 97 chr1 180668819 180669315 -101524349 - MLT1F1 LTR MaLR -2 565 87 18676 114 9 7 chr1 180669319 180674730 -101518934 + L1PA8 LINE L1 764 6172 0 309 311 34 68 chr1 180675037 180675185 -101518479 + MIR SINE MIR 50 192 -70 21 0 0 0 chr1 180675224 180675245 -101518419 + AT_rich Low_complexity Low_complexity 1 21 0 185 276 35 17 chr1 180677899 180677957 -101515707 - L3b LINE CR1 -353 1230 1172 201 223 234 0 chr1 180680989 180681083 -101512581 - MIR SINE MIR -56 206 91 386 326 110 0 chr1 180681326 180681553 -101512111 + L1ME4a LINE L1 5607 5858 -263 212 191 0 21 chr1 180681610 180681657 -101512007 + A-rich Low_complexity Low_complexity 5 50 0 225 0 0 0 chr1 180681751 180681776 -101511888 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr1 180681827 180681879 -101511785 + AT_rich Low_complexity Low_complexity 1 52 0 231 385 22 0 chr1 180682683 180682774 -101510890 - L3 LINE CR1 -83 1494 1402 322 294 67 39 chr1 180682985 180683165 -101510499 - L1MC4a LINE L1 -1852 5956 5772 207 363 134 11 chr1 180683175 180683354 -101510310 - L3 LINE CR1 -164 1413 1213 305 245 99 63 chr1 180684544 180684797 -101508867 - L1ME4a LINE L1 0 6121 5860 514 211 0 115 chr1 180685113 180685269 -101508395 - MER20 DNA MER1_type -56 163 26 314 232 32 21 chr1 180685352 180685447 -101508217 - L1MC5 LINE L1 -555 7406 7311 245 182 34 45 chr1 180685452 180685540 -101508124 + (CTATA)n Simple_repeat Simple_repeat 4 90 0 27 0 0 0 chr1 180685572 180685599 -101508065 + AT_rich Low_complexity Low_complexity 1 27 0 755 144 81 6 chr1 180685613 180685787 -101507877 + MER53 DNA DNA 3 189 0 275 127 0 16 chr1 180685838 180685901 -101507763 + L1MA7 LINE L1 6230 6291 0 1984 117 0 18 chr1 180685907 180686190 -101507474 + AluSx SINE Alu 3 280 -32 243 0 0 0 chr1 180686194 180686221 -101507443 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 322 269 62 55 chr1 180686320 180686343 -101507321 - L1MC5 LINE L1 -742 7219 7198 2502 52 0 0 chr1 180686343 180686634 -101507030 - AluY SINE Alu -20 291 1 322 269 62 55 chr1 180686634 180686755 -101506909 - L1MC5 LINE L1 -763 7198 7074 456 180 30 6 chr1 180687612 180687779 -101505885 + (TA)n Simple_repeat Simple_repeat 2 172 0 370 291 42 24 chr1 180688327 180688492 -101505172 + L2 LINE L2 1895 2062 -1252 189 364 45 52 chr1 180688842 180688996 -101504668 + MIR3 SINE MIR 41 193 -15 28 48 0 0 chr1 180689653 180689695 -101503969 + AT_rich Low_complexity Low_complexity 1 42 0 498 253 253 0 chr1 180690593 180690763 -101502901 + MIR SINE MIR 40 252 -10 1263 337 90 35 chr1 180691581 180692566 -101501098 + L2 LINE L2 1570 2608 -706 2530 153 9 7 chr1 180692695 180693120 -101500544 + MSTC LTR MaLR 3 428 0 303 28 0 0 chr1 180693174 180693210 -101500454 + (TG)n Simple_repeat Simple_repeat 1 36 0 312 325 35 24 chr1 180693210 180693379 -101500285 + L2 LINE L2 2723 2893 -421 3493 32 0 0 chr1 180693399 180693810 -101499854 - L1PA3 LINE L1 -3 6152 5742 3966 17 0 2 chr1 180693810 180694318 -101499346 + L1PA3 LINE L1 5231 5737 -418 463 325 129 30 chr1 180694372 180694704 -101498960 + L2 LINE L2 2949 3313 0 1233 242 82 9 chr1 180695824 180696275 -101497389 + MER69B DNA AcHobo 743 1226 0 808 255 92 21 chr1 180696277 180696719 -101496945 - MER20B DNA MER1_type -99 684 129 574 207 17 0 chr1 180697493 180697609 -101496055 - MIR SINE MIR -43 219 102 32 26 0 0 chr1 180697698 180697737 -101495927 + AT_rich Low_complexity Low_complexity 1 39 0 640 226 0 8 chr1 180697762 180697886 -101495778 + FLAM_A SINE Alu 1 123 -19 1059 161 96 5 chr1 180698258 180698457 -101495207 + MSTB LTR MaLR 1 217 -209 197 83 28 0 chr1 180698959 180698995 -101494669 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 463 306 16 0 chr1 180698995 180699116 -101494548 + MIR SINE MIR 16 138 -124 280 328 8 16 chr1 180700737 180700859 -101492805 - MIR SINE MIR -13 249 129 700 339 45 0 chr1 180701761 180702006 -101491658 + MIR SINE MIR 1 256 -6 226 332 211 5 chr1 180703087 180703286 -101490378 - MIR SINE MIR -3 259 20 202 228 18 18 chr1 180703451 180703508 -101490156 - MIR3 SINE MIR -1 207 151 208 306 42 14 chr1 180703615 180703687 -101489977 - MIR SINE MIR -62 146 73 2273 90 3 22 chr1 180704323 180704635 -101489029 + AluY SINE Alu 1 306 -5 325 266 35 98 chr1 180705354 180705557 -101488107 - L2 LINE L2 -4 3309 3120 234 344 25 32 chr1 180706402 180706559 -101487105 + MIR SINE MIR 107 262 0 226 317 65 49 chr1 180706914 180707037 -101486627 + MIR3 SINE MIR 36 160 -48 633 260 7 13 chr1 180707039 180707193 -101486471 - MER5B DNA MER1_type -24 154 2 215 152 0 65 chr1 180708088 180708134 -101485530 + L2 LINE L2 3269 3311 -2 899 143 8 0 chr1 180708752 180708885 -101484779 - AluJo SINE Alu -178 134 1 441 262 7 63 chr1 180708938 180709099 -101484565 + MIR SINE MIR 42 192 -67 362 258 47 31 chr1 180710056 180710184 -101483480 + MIR3 SINE MIR 70 199 -9 30 27 0 0 chr1 180711425 180711462 -101482202 + AT_rich Low_complexity Low_complexity 1 37 0 722 292 159 14 chr1 180711556 180711902 -101481762 - LTR16A LTR ERVL 0 450 55 2206 125 3 0 chr1 180713098 180713402 -101480262 - AluSg SINE Alu -5 305 1 25 0 0 0 chr1 180714943 180714968 -101478696 + AT_rich Low_complexity Low_complexity 1 25 0 1271 131 56 52 chr1 180714982 180715249 -101478415 - L1MA10 LINE L1 -525 5643 5376 3771 156 13 17 chr1 180715249 180715934 -101477730 + L1MA10 LINE L1 5644 6334 0 293 333 71 0 chr1 180716973 180717099 -101476565 + MIR SINE MIR 128 262 0 740 166 6 46 chr1 180718231 180718406 -101475258 + L1MA7 LINE L1 6121 6288 -3 585 212 8 0 chr1 180718653 180718771 -101474893 + MER58A DNA MER1_type 1 119 0 862 208 76 61 chr1 180719446 180719762 -101473902 + LTR56 LTR ERV1 11 303 -134 258 32 0 0 chr1 180719762 180719793 -101473871 + (CA)n Simple_repeat Simple_repeat 2 32 0 862 208 76 61 chr1 180719793 180719931 -101473733 + LTR56 LTR ERV1 303 437 0 24 0 0 0 chr1 180720295 180720319 -101473345 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr1 180921638 180921661 -101272003 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 348 284 52 45 chr1 180923384 180923518 -101270146 + MIR SINE MIR 49 183 -79 1005 217 15 0 chr1 180924680 180924878 -101268786 - MER58A DNA MER1_type -3 221 21 406 373 25 0 chr1 180924957 180925118 -101268546 + MIR3 SINE MIR 41 205 -3 316 308 238 7 chr1 180925663 180925806 -101267858 + MIR SINE MIR 37 212 -50 192 299 0 45 chr1 180926508 180926575 -101267089 - L2 LINE L2 -1 3312 3249 530 177 7 27 chr1 180929803 180929950 -101263714 + GA-rich Low_complexity Low_complexity 4 147 0 224 306 62 0 chr1 180930704 180930848 -101262816 + CT-rich Low_complexity Low_complexity 2 154 0 336 188 0 0 chr1 180930975 180931044 -101262620 + (CA)n Simple_repeat Simple_repeat 1 69 0 344 155 14 0 chr1 180932541 180932612 -101261052 + (TG)n Simple_repeat Simple_repeat 1 72 0 206 313 12 50 chr1 180935549 180935629 -101258035 + polypyrimidine Low_complexity Low_complexity 3 79 0 258 32 0 0 chr1 180937524 180937555 -101256109 + (TG)n Simple_repeat Simple_repeat 2 32 0 206 225 0 0 chr1 180938560 180938600 -101255064 + GA-rich Low_complexity Low_complexity 1 40 0 2257 78 3 13 chr1 180940079 180940386 -101253278 - AluSx SINE Alu -7 305 2 837 49 0 0 chr1 180940639 180940741 -101252923 + AluY SINE Alu 199 300 -11 490 319 36 28 chr1 180941205 180941456 -101252208 + L2 LINE L2 2927 3179 -134 207 0 0 0 chr1 180942413 180942436 -101251228 + (TTCC)n Simple_repeat Simple_repeat 4 26 0 1238 264 69 95 chr1 180943042 180943393 -101250271 + L3 LINE CR1 783 1109 -468 1549 197 3 0 chr1 180943393 180943511 -101250153 + AluJb SINE Alu 1 117 -195 369 0 0 0 chr1 180943511 180943552 -101250112 + (CA)n Simple_repeat Simple_repeat 2 42 0 1549 197 3 0 chr1 180943552 180943732 -101249932 + AluJb SINE Alu 117 300 -12 1238 264 69 95 chr1 180943732 180944051 -101249613 + L3 LINE CR1 1109 1435 -142 278 314 43 54 chr1 180944073 180944258 -101249406 - L2 LINE L2 -15 3298 3116 236 321 18 37 chr1 180944324 180944433 -101249231 + L3 LINE CR1 1425 1531 -46 182 265 102 51 chr1 180944446 180944544 -101249120 + MER5B DNA MER1_type 8 110 -68 181 271 0 71 chr1 180945307 180945377 -101248287 + MIR SINE MIR 156 220 -42 473 260 175 19 chr1 180946009 180946163 -101247501 + MER5A DNA MER1_type 10 187 -2 1932 99 11 0 chr1 180946420 180946693 -101246971 + AluSx SINE Alu 1 276 -36 180 0 0 0 chr1 180946699 180946719 -101246945 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 390 333 59 79 chr1 180947744 180948200 -101245464 + L2 LINE L2 2815 3261 -11 262 247 27 130 chr1 180948262 180948408 -101245256 - MIR SINE MIR -63 145 15 26 0 0 0 chr1 180948540 180948566 -101245098 + AT_rich Low_complexity Low_complexity 1 26 0 2165 108 0 3 chr1 180948569 180948876 -101244788 - AluSx SINE Alu -6 306 1 29 0 0 0 chr1 180950315 180950344 -101243320 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr1 180950438 180950488 -101243176 + AT_rich Low_complexity Low_complexity 1 50 0 1927 158 63 6 chr1 180950506 180950841 -101242823 - MLT1A1 LTR MaLR 0 365 12 545 300 159 9 chr1 180950846 180951066 -101242598 + MIR SINE MIR 5 257 -5 184 349 0 16 chr1 180951105 180951158 -101242506 - L3b LINE CR1 0 1583 1532 191 323 0 97 chr1 180951158 180951251 -101242413 + MER5C DNA MER1_type 1 84 -240 325 203 31 0 chr1 180951520 180951584 -101242080 - L3 LINE CR1 -267 1310 1245 1936 123 3 31 chr1 180951791 180952109 -101241555 - AluSq SINE Alu -4 309 1 402 320 39 45 chr1 180952125 180952303 -101241361 - L3 LINE CR1 -369 1208 1032 872 328 0 4 chr1 180952766 180953025 -101240639 + MIR SINE MIR 3 260 -2 30 0 0 0 chr1 180953850 180953880 -101239784 + AT_rich Low_complexity Low_complexity 1 30 0 2242 104 0 3 chr1 180954150 180954496 -101239168 - AluSx SINE Alu 0 312 1 373 307 38 105 chr1 180954714 180954952 -101238712 - L2 LINE L2 -13 3259 3038 326 335 127 59 chr1 180955900 180956324 -101237340 - L2 LINE L2 -403 2911 2459 185 237 53 0 chr1 180956347 180956385 -101237279 + L2 LINE L2 3259 3298 -15 370 237 246 8 chr1 180956452 180956570 -101237094 + MIR3 SINE MIR 51 196 -12 299 263 80 58 chr1 180957393 180957584 -101236080 + MIR3 SINE MIR 4 205 -57 850 274 61 16 chr1 180957593 180957838 -101235826 - MIR SINE MIR -5 257 2 303 290 62 20 chr1 180958064 180958211 -101235453 - MIR3 SINE MIR -1 207 59 233 280 240 0 chr1 180958650 180958750 -101234914 + L2 LINE L2 3174 3297 -16 198 0 0 0 chr1 180959411 180959433 -101234231 + (TAA)n Simple_repeat Simple_repeat 2 23 0 378 350 58 38 chr1 180960940 180961180 -101232484 - MIR SINE MIR -1 261 17 237 277 223 0 chr1 180961230 180961324 -101232340 - L2 LINE L2 -78 3235 3121 241 327 58 19 chr1 180961473 180961577 -101232087 + L3 LINE CR1 1161 1268 -309 214 227 0 0 chr1 180961615 180961659 -101232005 - L2 LINE L2 -27 3286 3243 297 310 39 71 chr1 180961898 180962055 -101231609 + MIR SINE MIR 1 151 -64 434 261 129 94 chr1 180962308 180962510 -101231154 - MLT1K LTR MaLR -61 527 305 2425 56 0 0 chr1 180962510 180962815 -101230849 - AluY SINE Alu -6 305 1 434 261 129 94 chr1 180962815 180962983 -101230681 - MLT1K LTR MaLR -283 305 144 243 231 77 26 chr1 180962991 180963069 -101230595 + MLT1K LTR MaLR 114 195 -393 4591 211 68 78 chr1 180963360 180963473 -101230191 + Zaphod DNA AcHobo 1 114 -3917 2087 117 0 10 chr1 180963473 180963811 -101229853 + AluSx SINE Alu 1 312 0 4591 211 68 78 chr1 180963811 180963960 -101229704 + Zaphod DNA AcHobo 114 263 -3768 1061 102 0 6 chr1 180963960 180964127 -101229537 + L1MA5 LINE L1 6134 6299 -1 4591 211 68 78 chr1 180964127 180965221 -101228443 + Zaphod DNA AcHobo 263 1342 -2689 7117 55 11 0 chr1 180965221 180966701 -101226963 - L1PA6 LINE L1 -1 6153 4668 4591 211 68 78 chr1 180966701 180966941 -101226723 + Zaphod DNA AcHobo 1342 1583 -2448 3399 176 51 107 chr1 180966950 180967410 -101226254 + Zaphod DNA AcHobo 2480 2964 -1067 2186 123 0 3 chr1 180967410 180967719 -101225945 + AluSg SINE Alu 1 308 -2 3399 176 51 107 chr1 180967719 180968391 -101225273 + Zaphod DNA AcHobo 2964 3549 -482 919 189 8 157 chr1 180968392 180968534 -101225130 + AluYb8 SINE Alu 1 56 -262 2110 104 0 3 chr1 180968534 180968831 -101224833 + AluSg SINE Alu 1 296 -14 919 189 8 157 chr1 180968831 180969058 -101224606 + AluYb8 SINE Alu 56 315 -3 1400 230 71 16 chr1 180969058 180969506 -101224158 + Zaphod DNA AcHobo 3551 4023 -8 348 108 231 0 chr1 180971028 180971093 -101222571 + MADE1 DNA Mariner 1 80 0 395 314 67 90 chr1 180971172 180971548 -101222116 + L2 LINE L2 2600 2966 -348 13806 213 44 26 chr1 180971821 180972195 -101221469 - L1MA7 LINE L1 -11 6484 6118 243 0 0 0 chr1 180972195 180972222 -101221442 + (TG)n Simple_repeat Simple_repeat 2 28 0 13806 213 44 26 chr1 180972222 180973718 -101219946 - L1MA7 LINE L1 -377 6118 4650 1874 132 0 0 chr1 180973718 180973976 -101219688 - AluSg SINE Alu -18 292 35 13806 213 44 26 chr1 180973976 180978173 -101215491 - L1MA7 LINE L1 -1845 4650 3 2553 136 29 26 chr1 180978952 180979370 -101214294 + MSTB LTR MaLR 8 426 0 3979 208 64 140 chr1 180979419 180981336 -101212328 + L1MCa LINE L1 3 2052 -4512 12542 169 59 22 chr1 180981336 180982181 -101211483 + L1PA12 LINE L1 1 813 -6771 1970 125 0 14 chr1 180982181 180982505 -101211159 - AluSx SINE Alu 0 320 1 12542 169 59 22 chr1 180982505 180983968 -101209696 + L1PA12 LINE L1 813 2221 -5363 1851 100 0 32 chr1 180983968 180984248 -101209416 + L1PA12 LINE L1 5898 6168 0 12542 169 59 22 chr1 180984248 180984967 -101208697 + L1PA12 LINE L1 2221 2912 -4672 1918 155 10 7 chr1 180984967 180985271 -101208393 + AluSx SINE Alu 1 305 -7 12542 169 59 22 chr1 180985271 180985808 -101207856 + L1PA12 LINE L1 2912 4158 -3426 388 19 0 0 chr1 180985801 180985853 -101207811 + L1P LINE L1 4569 4620 -2964 * 13766 140 34 11 chr1 180985853 180988156 -101205508 - Tigger1 DNA MER2_type -62 2356 1 238 337 42 11 chr1 180988963 180989058 -101204606 - MIR3 SINE MIR -107 101 4 21 0 0 0 chr1 180989356 180989377 -101204287 + AT_rich Low_complexity Low_complexity 1 21 0 4003 35 0 4 chr1 180989377 180989857 -101203807 - L1PA3 LINE L1 -1 6154 5677 2305 47 29 0 chr1 180990017 180990326 -101203338 - AluY SINE Alu 0 317 1 22 35 0 0 chr1 180991213 180991242 -101202422 + AT_rich Low_complexity Low_complexity 1 29 0 4559 189 32 26 chr1 180991335 180992650 -101201014 + L1MB4 LINE L1 4848 6179 -1 290 188 0 29 chr1 180992654 180992723 -101200941 + L1MC4 LINE L1 7975 8041 -1 424 271 36 7 chr1 180993960 180994101 -101199563 - MIR SINE MIR -68 140 8 4280 189 43 32 chr1 180994139 180994649 -101199015 - L1MA9 LINE L1 -38 6274 5771 186 43 0 0 chr1 180994649 180994672 -101198992 + (TG)n Simple_repeat Simple_repeat 2 24 0 4280 189 43 32 chr1 180994672 180995393 -101198271 - L1MA9 LINE L1 -541 5771 5031 * 6687 44 9 3 chr1 180995392 180996303 -101197361 - L1PA4 LINE L1 0 6155 4907 409 228 21 69 chr1 180996611 180996756 -101196908 - MIR SINE MIR -65 197 60 349 48 0 0 chr1 180997758 180997800 -101195864 + MER4E LTR ERV1 653 694 -72 36 70 0 0 chr1 180997873 180997944 -101195720 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr1 180998312 180998333 -101195331 + AT_rich Low_complexity Low_complexity 1 21 0 1383 230 62 97 chr1 180999306 180999802 -101193862 - MLT1F1 LTR MaLR -2 565 87 28327 120 10 10 chr1 180999806 181005217 -101188447 + L1PA8 LINE L1 764 6172 0 312 311 34 68 chr1 181005524 181005672 -101187992 + MIR SINE MIR 50 192 -70 21 0 0 0 chr1 181005711 181005732 -101187932 + AT_rich Low_complexity Low_complexity 1 21 0 186 276 35 17 chr1 181008386 181008444 -101185220 - L3b LINE CR1 -353 1230 1172 202 223 234 0 chr1 181011476 181011570 -101182094 - MIR SINE MIR -56 206 91 445 328 109 0 chr1 181011811 181012040 -101181624 + L1ME4a LINE L1 5605 5858 -263 212 191 0 21 chr1 181012097 181012144 -101181520 + A-rich Low_complexity Low_complexity 5 50 0 225 0 0 0 chr1 181012238 181012263 -101181401 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr1 181012314 181012366 -101181298 + AT_rich Low_complexity Low_complexity 1 52 0 232 385 22 0 chr1 181013170 181013261 -101180403 - L3 LINE CR1 -83 1494 1402 322 294 67 39 chr1 181013472 181013652 -101180012 - L1MC4a LINE L1 -1852 5956 5772 218 363 134 11 chr1 181013662 181013841 -101179823 - L3 LINE CR1 -164 1413 1213 364 245 99 63 chr1 181015031 181015284 -101178380 - L1ME4a LINE L1 0 6121 5860 561 211 0 115 chr1 181015600 181015756 -101177908 - MER20 DNA MER1_type -56 163 26 339 232 32 21 chr1 181015839 181015934 -101177730 - L1MC5 LINE L1 -555 7406 7311 245 182 34 45 chr1 181015939 181016027 -101177637 + (CTATA)n Simple_repeat Simple_repeat 4 90 0 27 0 0 0 chr1 181016059 181016086 -101177578 + AT_rich Low_complexity Low_complexity 1 27 0 775 144 81 6 chr1 181016100 181016274 -101177390 + MER53 DNA DNA 3 189 0 289 127 0 16 chr1 181016325 181016388 -101177276 + L1MA7 LINE L1 6230 6291 0 1988 117 0 18 chr1 181016394 181016677 -101176987 + AluSx SINE Alu 3 280 -32 243 0 0 0 chr1 181016681 181016708 -101176956 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2506 52 0 0 chr1 181016830 181017121 -101176543 - AluY SINE Alu -20 291 1 237 264 11 22 chr1 181017134 181017225 -101176439 - L1MC5 LINE L1 -773 7188 7099 456 180 30 6 chr1 181018099 181018266 -101175398 + (TA)n Simple_repeat Simple_repeat 2 172 0 371 291 42 24 chr1 181018814 181018979 -101174685 + L2 LINE L2 1895 2062 -1252 193 364 45 52 chr1 181019329 181019483 -101174181 + MIR3 SINE MIR 41 193 -15 28 48 0 0 chr1 181020140 181020182 -101173482 + AT_rich Low_complexity Low_complexity 1 42 0 499 253 253 0 chr1 181021080 181021250 -101172414 + MIR SINE MIR 40 252 -10 1273 337 90 35 chr1 181022068 181023053 -101170611 + L2 LINE L2 1570 2608 -706 2530 153 9 7 chr1 181023182 181023607 -101170057 + MSTC LTR MaLR 3 428 0 303 28 0 0 chr1 181023661 181023697 -101169967 + (TG)n Simple_repeat Simple_repeat 1 36 0 312 325 35 24 chr1 181023697 181023866 -101169798 + L2 LINE L2 2723 2893 -421 3493 32 0 0 chr1 181023886 181024297 -101169367 - L1PA3 LINE L1 -3 6152 5742 3966 17 0 2 chr1 181024297 181024805 -101168859 + L1PA3 LINE L1 5231 5737 -418 463 325 129 30 chr1 181024859 181025191 -101168473 + L2 LINE L2 2949 3313 0 1233 242 82 9 chr1 181026311 181026762 -101166902 + MER69B DNA AcHobo 743 1226 0 808 255 92 21 chr1 181026764 181027206 -101166458 - MER20B DNA MER1_type -99 684 129 574 207 17 0 chr1 181027980 181028096 -101165568 - MIR SINE MIR -43 219 102 32 26 0 0 chr1 181028185 181028224 -101165440 + AT_rich Low_complexity Low_complexity 1 39 0 640 226 0 8 chr1 181028249 181028373 -101165291 + FLAM_A SINE Alu 1 123 -19 1059 161 96 5 chr1 181028745 181028944 -101164720 + MSTB LTR MaLR 1 217 -209 197 83 28 0 chr1 181029446 181029482 -101164182 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 463 306 16 0 chr1 181029482 181029603 -101164061 + MIR SINE MIR 16 138 -124 280 328 8 16 chr1 181031224 181031346 -101162318 - MIR SINE MIR -13 249 129 700 339 45 0 chr1 181032248 181032493 -101161171 + MIR SINE MIR 1 256 -6 226 332 211 5 chr1 181033574 181033773 -101159891 - MIR SINE MIR -3 259 20 202 228 18 18 chr1 181033938 181033995 -101159669 - MIR3 SINE MIR -1 207 151 208 306 42 14 chr1 181034102 181034174 -101159490 - MIR SINE MIR -62 146 73 2273 90 3 22 chr1 181034810 181035122 -101158542 + AluY SINE Alu 1 306 -5 325 266 35 98 chr1 181035841 181036044 -101157620 - L2 LINE L2 -4 3309 3120 234 344 25 32 chr1 181036889 181037046 -101156618 + MIR SINE MIR 107 262 0 226 317 65 49 chr1 181037401 181037524 -101156140 + MIR3 SINE MIR 36 160 -48 633 260 7 13 chr1 181037526 181037680 -101155984 - MER5B DNA MER1_type -24 154 2 215 152 0 65 chr1 181038575 181038621 -101155043 + L2 LINE L2 3269 3311 -2 899 143 8 0 chr1 181039239 181039372 -101154292 - AluJo SINE Alu -178 134 1 441 262 7 63 chr1 181039425 181039586 -101154078 + MIR SINE MIR 42 192 -67 362 258 47 31 chr1 181040543 181040671 -101152993 + MIR3 SINE MIR 70 199 -9 30 27 0 0 chr1 181041912 181041949 -101151715 + AT_rich Low_complexity Low_complexity 1 37 0 722 292 159 14 chr1 181042043 181042389 -101151275 - LTR16A LTR ERVL 0 450 55 2206 125 3 0 chr1 181043585 181043889 -101149775 - AluSg SINE Alu -5 305 1 25 0 0 0 chr1 181045430 181045455 -101148209 + AT_rich Low_complexity Low_complexity 1 25 0 1271 131 56 52 chr1 181045469 181045736 -101147928 - L1MA10 LINE L1 -525 5643 5376 3771 156 13 17 chr1 181045736 181046421 -101147243 + L1MA10 LINE L1 5644 6334 0 293 333 71 0 chr1 181047460 181047586 -101146078 + MIR SINE MIR 128 262 0 346 159 0 14 chr1 181147994 181148063 -101045601 - MER65B LTR ERV1 -463 68 1 2137 288 34 20 chr1 181148063 181148864 -101044800 - L1ME3A LINE L1 -28 6640 5829 680 267 65 1 chr1 181149149 181149469 -101044195 - L1ME LINE L1 -4892 1653 1313 350 315 58 17 chr1 181149463 181149704 -101043960 - L1ME LINE L1 -5240 1394 1144 * 190 282 105 48 chr1 181150089 181150213 -101043451 + MIR SINE MIR 67 197 -65 226 283 17 0 chr1 181150346 181150406 -101043258 + (CA)n Simple_repeat Simple_repeat 1 61 0 287 218 23 58 chr1 181151152 181151239 -101042425 - L2 LINE L2 -3 3310 3227 230 293 57 38 chr1 181151480 181151586 -101042078 + L2 LINE L2 3172 3279 -34 1497 12 0 0 chr1 181151793 181151963 -101041701 + L1HS LINE L1 5985 6154 -1 24 67 0 0 chr1 181151963 181152008 -101041656 + AT_rich Low_complexity Low_complexity 1 45 0 1247 261 113 0 chr1 181156755 181157054 -101036610 + L1ME2 LINE L1 4639 5001 -1145 288 0 0 0 chr1 181157054 181157086 -101036578 + (CA)n Simple_repeat Simple_repeat 1 32 0 1247 261 113 0 chr1 181157086 181157211 -101036453 + L1ME2 LINE L1 5001 5111 -1035 23240 52 2 0 chr1 181157218 181163247 -101030417 + L1PA4 LINE L1 7 6152 -3 1937 163 10 0 chr1 181163330 181163636 -101030028 + AluSx SINE Alu 4 312 0 2828 221 86 11 chr1 181163640 181164501 -101029163 + L1ME2 LINE L1 5192 6113 -51 275 211 0 13 chr1 181164521 181164597 -101029067 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 279 357 116 8 chr1 181164712 181164841 -101028823 + MIR3 SINE MIR 31 173 -35 583 325 36 0 chr1 181165356 181165550 -101028114 - MER63A DNA MER1_type -9 201 1 525 250 58 0 chr1 181166253 181166409 -101027255 + MIR SINE MIR 54 218 -44 8037 118 8 32 chr1 181167687 181168240 -101025424 + L1PA10 LINE L1 4104 4669 -1499 2170 107 0 36 chr1 181168240 181168549 -101025115 + AluY SINE Alu 1 298 -13 8037 118 8 32 chr1 181168549 181170082 -101023582 + L1PA10 LINE L1 4669 6163 -5 851 219 100 0 chr1 181170926 181171136 -101022528 - L1MC4 LINE L1 -14 8028 7798 1735 273 66 3 chr1 181171650 181172255 -101021409 - L1MC4 LINE L1 -146 7896 7254 511 210 57 19 chr1 181172271 181172428 -101021236 - L1MC4 LINE L1 -961 7081 6919 * 1438 178 46 14 chr1 181172426 181173061 -101020603 + L1MB1 LINE L1 5400 6163 -5 207 286 36 24 chr1 181173192 181173276 -101020388 - L2 LINE L2 -5 3267 3183 502 291 86 37 chr1 181173381 181173625 -101020039 - MIR SINE MIR -1 261 6 195 129 0 0 chr1 181174152 181174183 -101019481 + (A)n Simple_repeat Simple_repeat 1 31 0 221 278 0 0 chr1 181174414 181174468 -101019196 + L2 LINE L2 3219 3272 0 3996 74 0 19 chr1 181174498 181174627 -101019037 + L1PA7 LINE L1 5653 5783 -371 2814 16 0 6 chr1 181174627 181174940 -101018724 + AluYa5 SINE Alu 1 311 0 3996 74 0 19 chr1 181174940 181175322 -101018342 + L1PA7 LINE L1 5783 6154 0 249 386 7 7 chr1 181175333 181175486 -101018178 + L3 LINE CR1 666 818 -759 44987 43 0 2 chr1 181176814 181182399 -101011265 - L1P1 LINE L1 -573 5582 6 3064 156 69 5 chr1 181182404 181182873 -101010791 + L1MC2 LINE L1 5744 6256 -88 2221 121 3 0 chr1 181182873 181183179 -101010485 + AluSc SINE Alu 1 307 -2 3064 156 69 5 chr1 181183179 181183274 -101010390 + L1MC2 LINE L1 6256 6344 0 607 258 55 39 chr1 181183451 181183707 -101009957 - MIR SINE MIR 0 262 3 348 300 100 56 chr1 181184659 181184929 -101008735 + MLT1J2 LTR MaLR 113 394 -56 32 67 0 0 chr1 181184929 181184989 -101008675 + AT_rich Low_complexity Low_complexity 1 60 0 2659 52 0 0 chr1 181185127 181185432 -101008232 + AluY SINE Alu 1 305 -6 210 298 0 0 chr1 181185796 181185843 -101007821 + L2 LINE L2 3014 3060 -253 202 363 22 11 chr1 181186266 181186357 -101007307 + L2 LINE L2 2954 3045 -227 355 250 92 67 chr1 181186642 181186762 -101006902 + L1M4b LINE L1 17 139 -6720 762 93 203 0 chr1 181189515 181189633 -101004031 + L1MA1 LINE L1 6157 6298 -4 24 32 0 0 chr1 181189634 181189665 -101003999 + AT_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr1 181190327 181190360 -101003304 + AT_rich Low_complexity Low_complexity 1 33 0 287 347 92 42 chr1 181191002 181191426 -101002238 + L2 LINE L2 1810 2254 -1060 633 249 38 32 chr1 181193186 181193371 -101000293 - MIR SINE MIR -36 226 41 475 204 0 37 chr1 181193462 181193570 -101000094 - L1PB4 LINE L1 0 6156 6053 210 226 132 0 chr1 181194267 181194320 -100999344 + L2 LINE L2 3196 3255 -17 2658 182 20 5 chr1 181197402 181197848 -100995816 + MSTB2 LTR MaLR 5 457 0 423 268 39 39 chr1 181198138 181198265 -100995399 - L2 LINE L2 0 3313 3187 2707 124 5 0 chr1 181199089 181199460 -100994204 + THE1C LTR MaLR 1 373 -2 261 305 9 48 chr1 181200539 181200644 -100993020 + MIR SINE MIR 162 262 0 234 174 0 0 chr1 181201601 181201647 -100992017 + GA-rich Low_complexity Low_complexity 3 48 0 297 109 0 0 chr1 181202199 181202245 -100991419 + (GA)n Simple_repeat Simple_repeat 2 47 0 212 316 52 52 chr1 181203547 181203683 -100989981 + L2 LINE L2 1825 1960 -1354 309 26 0 0 chr1 181203873 181203911 -100989753 + (CA)n Simple_repeat Simple_repeat 1 38 0 860 215 0 6 chr1 181204024 181204201 -100989463 + MER3 DNA MER1_type 1 129 -80 21 0 0 0 chr1 181206970 181206991 -100986673 + AT_rich Low_complexity Low_complexity 1 21 0 246 353 101 0 chr1 181208860 181208979 -100984685 + L2 LINE L2 3164 3294 -19 1247 197 34 124 chr1 181209063 181209353 -100984311 - MLT1A2 LTR MaLR 0 374 130 2672 144 39 0 chr1 181209353 181209763 -100983901 + MSTA LTR MaLR 3 428 0 1247 197 34 124 chr1 181209763 181209883 -100983781 - MLT1A2 LTR MaLR -244 130 1 221 277 5 158 chr1 181210740 181210942 -100982722 - MIR SINE MIR -33 229 59 44412 44 2 2 chr1 181211046 181217208 -100976456 + L1PA3 LINE L1 13 6174 0 268 324 104 45 chr1 181217214 181217462 -100976202 + L2 LINE L2 2990 3294 -19 226 247 225 0 chr1 181217742 181217831 -100975833 + MIR SINE MIR 53 161 -101 223 205 130 93 chr1 181217757 181217918 -100975746 - MIR SINE MIR -34 228 62 * 229 361 105 26 chr1 181218046 181218312 -100975352 - L2 LINE L2 -19 3294 3008 1278 323 70 23 chr1 181218576 181219260 -100974404 - L2 LINE L2 -573 2741 2026 216 0 0 0 chr1 181219564 181219588 -100974076 + (CCA)n Simple_repeat Simple_repeat 3 26 0 2362 105 44 41 chr1 181220203 181220566 -100973098 - THE1B LTR MaLR 0 364 1 1299 260 29 3 chr1 181221024 181221339 -100972325 + LTR53 LTR ERVL 197 519 0 30261 113 10 20 chr1 181223363 181229857 -100963807 + L1PA7 LINE L1 8 6469 0 260 306 74 0 chr1 181230320 181230428 -100963236 - L1MC/D LINE L1 -2038 5770 5655 216 0 0 0 chr1 181230466 181230490 -100963174 + (A)n Simple_repeat Simple_repeat 1 24 0 342 203 58 158 chr1 181230614 181230717 -100962947 + HAL1 LINE L1 2229 2341 -166 7508 31 0 1 chr1 181230717 181232141 -100961523 + L1PA4 LINE L1 4722 6144 -11 342 203 58 158 chr1 181232141 181232347 -100961317 + HAL1 LINE L1 2341 2507 0 718 230 36 18 chr1 181232690 181232855 -100960809 - MER45A DNA AcHobo -1 177 10 750 275 55 50 chr1 181233940 181234340 -100959324 - MER93a LTR ERV1 0 402 1 183 267 67 0 chr1 181234676 181234736 -100958928 - L3b LINE CR1 -79 1504 1441 2011 153 14 28 chr1 181235475 181235835 -100957829 + THE1A LTR MaLR 1 355 0 215 252 52 78 chr1 181236216 181236331 -100957333 - MIR SINE MIR -114 148 37 208 147 0 0 chr1 181236602 181236636 -100957028 + (TTA)n Simple_repeat Simple_repeat 1 34 0 372 189 14 0 chr1 181236949 181237023 -100956641 - MIR SINE MIR -11 251 177 592 239 43 0 chr1 181237516 181237679 -100955985 - LTR33A LTR ERVL -26 497 328 641 303 77 19 chr1 181237727 181237988 -100955676 - LTR16C LTR ERVL -23 468 193 1702 144 163 21 chr1 181237992 181238367 -100955297 - MSTA LTR MaLR 0 428 1 454 267 262 5 chr1 181238599 181238805 -100954859 - LTR33A LTR ERVL -193 330 72 1187 282 28 2 chr1 181238817 181239250 -100954414 - L1M4 LINE L1 -915 5231 4788 886 244 58 0 chr1 181239252 181239526 -100954138 - L1M4 LINE L1 -1296 4850 4561 2482 269 38 22 chr1 181239542 181240416 -100953248 + L1ME3A LINE L1 5255 6142 -28 1805 136 57 13 chr1 181240416 181240578 -100953086 + MER65A LTR ERV1 1 154 -291 252 0 0 0 chr1 181240578 181240606 -100953058 + (CA)n Simple_repeat Simple_repeat 1 28 0 1805 136 57 13 chr1 181240606 181240759 -100952905 + MER65A LTR ERV1 154 330 -115 5248 21 0 0 chr1 181240917 181241522 -100952142 - L1PA3 LINE L1 0 6155 5551 664 135 48 16 chr1 181241614 181241740 -100951924 + MER65A LTR ERV1 316 445 0 212 286 0 65 chr1 181241776 181241853 -100951811 + MIR SINE MIR 187 258 -4 24 32 0 0 chr1 181242069 181242100 -100951564 + AT_rich Low_complexity Low_complexity 1 31 0 259 259 153 0 chr1 181242679 181242764 -100950900 + L2 LINE L2 3204 3301 -12 21 0 0 0 chr1 181243112 181243133 -100950531 + AT_rich Low_complexity Low_complexity 1 21 0 862 262 36 11 chr1 181243395 181243670 -100949994 - L1MC/D LINE L1 -2240 5551 5270 464 298 144 47 chr1 181243706 181244172 -100949492 - L1MC/D LINE L1 -891 5238 4728 467 332 115 29 chr1 181244186 181244605 -100949059 - L1MC/D LINE L1 -1458 4671 4217 302 230 0 11 chr1 181244623 181244710 -100948954 + CT-rich Low_complexity Low_complexity 1 86 0 1371 231 90 13 chr1 181244796 181245142 -100948522 + MLT1A2 LTR MaLR 1 374 0 442 314 107 67 chr1 181245143 181245431 -100948233 - L1MC/D LINE L1 -2273 3856 3536 670 212 85 0 chr1 181245431 181245620 -100948044 - MER3 DNA MER1_type 0 209 5 442 314 107 67 chr1 181245620 181245857 -100947807 - L1MC/D LINE L1 -2593 3536 3310 1120 203 146 48 chr1 181245964 181246294 -100947370 + MLT2C1 LTR ERVL 36 397 0 1006 312 106 44 chr1 181246297 181247341 -100946323 - L1MC/D LINE L1 -2902 3227 2119 493 297 74 81 chr1 181247700 181248253 -100945411 - HAL1b LINE L1 -432 916 368 461 368 80 3 chr1 181249089 181249388 -100944276 - L1MC/D LINE L1 -5556 563 242 387 312 16 0 chr1 181249957 181250082 -100943582 + HAL1 LINE L1 1560 1686 -821 502 147 7 49 chr1 181250221 181250364 -100943300 + GA-rich Low_complexity Low_complexity 2 138 0 2043 117 13 7 chr1 181250366 181250675 -100942989 + AluY SINE Alu 1 311 0 457 77 11 55 chr1 181250682 181250773 -100942891 + (GGGGA)n Simple_repeat Simple_repeat 1 87 0 508 248 156 25 chr1 181250968 181251206 -100942458 - L1ME3A LINE L1 -220 5950 5682 361 309 7 36 chr1 181251269 181251369 -100942295 + ERVL LTR ERVL 2701 2797 -2967 3596 137 25 3 chr1 181251369 181251959 -100941705 - LTR26 LTR ERV1 0 603 1 361 309 7 36 chr1 181251959 181251997 -100941667 + ERVL LTR ERVL 2797 2835 -2929 2071 125 0 13 chr1 181252030 181252335 -100941329 + AluSg SINE Alu 1 301 -9 466 242 93 39 chr1 181252431 181252613 -100941051 + ERVL LTR ERVL 4049 4240 -1524 557 327 43 0 chr1 181252659 181252867 -100940797 + ERVL LTR ERVL 4322 4538 -1116 393 86 0 0 chr1 181252927 181252985 -100940679 + (TG)n Simple_repeat Simple_repeat 1 58 0 22 88 0 0 chr1 181252995 181253052 -100940612 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr1 181253097 181253120 -100940544 + AT_rich Low_complexity Low_complexity 1 23 0 230 279 49 44 chr1 181255322 181255526 -100938138 + L1ME LINE L1 4585 4789 -1357 364 282 106 82 chr1 181255639 181256043 -100937621 + L1ME LINE L1 4931 5344 -802 432 282 113 51 chr1 181256055 181256398 -100937266 + L1ME LINE L1 5382 5748 -414 2111 162 35 0 chr1 181256883 181257260 -100936404 - MLT1B LTR MaLR 0 390 1 184 266 18 119 chr1 181257282 181257391 -100936273 + L2 LINE L2 2953 3050 -222 504 247 126 17 chr1 181257631 181257805 -100935859 - MIR SINE MIR 0 262 70 43 56 0 0 chr1 181257916 181257987 -100935677 + AT_rich Low_complexity Low_complexity 1 71 0 266 0 29 0 chr1 181258073 181258107 -100935557 + (TG)n Simple_repeat Simple_repeat 1 35 0 2028 109 3 46 chr1 181258247 181258549 -100935115 - AluSp SINE Alu -24 289 1 24 0 0 0 chr1 181258557 181258581 -100935083 + AT_rich Low_complexity Low_complexity 1 24 0 210 191 0 0 chr1 181259531 181259573 -100934091 + (TA)n Simple_repeat Simple_repeat 2 43 0 235 176 27 27 chr1 181260155 181260229 -100933435 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 1014 240 29 29 chr1 181260237 181260621 -100933043 - L1M4 LINE L1 -4958 1584 1201 362 0 0 0 chr1 181260860 181260905 -100932759 - L1PA3 LINE L1 -3 6152 6108 485 286 32 18 chr1 181260973 181261193 -100932471 - L1M4 LINE L1 -6306 236 14 321 308 59 21 chr1 181261534 181261820 -100931844 + L1M4 LINE L1 2114 2410 -3736 30 77 0 0 chr1 181261823 181261888 -100931776 + AT_rich Low_complexity Low_complexity 1 65 0 23 33 0 0 chr1 181262057 181262087 -100931577 + AT_rich Low_complexity Low_complexity 1 30 0 245 295 9 34 chr1 181262166 181262284 -100931380 + L1M4 LINE L1 2722 2837 -3309 775 96 9 0 chr1 181262305 181262420 -100931244 - L1MA8 LINE L1 -159 6132 6017 882 144 66 0 chr1 181262421 181262588 -100931076 + L1MA8 LINE L1 6113 6290 -1 1325 321 114 38 chr1 181262600 181263183 -100930481 + L1M4 LINE L1 2915 3452 -2694 2149 121 3 0 chr1 181263183 181263480 -100930184 - AluSx SINE Alu -14 298 1 1325 321 114 38 chr1 181263480 181264195 -100929469 + L1M4 LINE L1 3452 4312 -1834 785 292 95 35 chr1 181264296 181264926 -100928738 + L1M4 LINE L1 4704 5371 -775 2324 103 7 0 chr1 181264983 181265293 -100928371 - AluSx SINE Alu 0 312 1 3150 155 23 67 chr1 181267331 181267987 -100925677 - L1MA4 LINE L1 0 6482 5860 1624 146 68 52 chr1 181267987 181268356 -100925308 + THE1C LTR MaLR 1 375 0 3150 155 23 67 chr1 181268356 181268430 -100925234 - L1MA4 LINE L1 -622 5860 5784 7408 201 21 14 chr1 181268431 181268511 -100925153 - L1MA4 LINE L1 -2383 3945 3867 225 0 0 0 chr1 181268511 181268536 -100925128 + (TG)n Simple_repeat Simple_repeat 2 26 0 7408 201 21 14 chr1 181268536 181270530 -100923134 - L1MA4 LINE L1 -2461 3867 1855 2361 136 57 30 chr1 181270530 181271047 -100922617 - MLT2A2 LTR ERVL 0 554 1 7081 189 22 8 chr1 181271099 181272876 -100920788 - L1MA4 LINE L1 -4074 1254 2 2503 201 121 26 chr1 181272898 181273183 -100920481 - Charlie2 DNA MER1_type -81 2781 2524 2301 108 0 0 chr1 181273183 181273489 -100920175 + AluSq SINE Alu 1 306 -7 2503 201 121 26 chr1 181273489 181274049 -100919615 - Charlie2 DNA MER1_type -338 2524 1856 273 224 17 0 chr1 181274106 181274164 -100919500 - Charlie2 DNA MER1_type -2800 62 4 5289 59 30 26 chr1 181274591 181274788 -100918876 - MER4E LTR ERV1 -26 740 545 2298 98 3 3 chr1 181274788 181275093 -100918571 + AluSg SINE Alu 1 305 -5 5289 59 30 26 chr1 181275093 181275632 -100918032 - MER4E LTR ERV1 -221 545 1 1521 151 22 4 chr1 181276476 181276748 -100916916 - MER4E-int LTR ERV1 -113 6645 6369 531 69 0 0 chr1 181276750 181276822 -100916842 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 7336 140 66 17 chr1 181276823 181278180 -100915484 - MER4E-int LTR ERV1 -448 6310 4761 2038 129 3 7 chr1 181278180 181278506 -100915158 - AluSq SINE Alu 0 313 1 7336 140 66 17 chr1 181278506 181278833 -100914831 - MER4E-int LTR ERV1 -1997 4761 4452 375 132 59 0 chr1 181278843 181278911 -100914753 - MER4E-int LTR ERV1 -4182 2576 2505 * 797 134 7 49 chr1 181278909 181279051 -100914613 - MER4E-int LTR ERV1 -6621 137 2 839 53 0 9 chr1 181279053 181279167 -100914497 - MER4E LTR ERV1 -1 765 653 332 322 83 35 chr1 181279268 181279498 -100914166 + L1MC4a LINE L1 4466 4706 -1440 416 305 59 44 chr1 181279510 181279988 -100913676 + L1MC4a LINE L1 4756 5240 -906 376 289 39 64 chr1 181280011 181280215 -100913449 + L1MC4a LINE L1 5293 5491 -2317 1926 218 174 6 chr1 181280225 181280898 -100912766 + LTR50 LTR ERVL 3 788 -7 391 308 48 24 chr1 181281010 181281302 -100912362 + L1MC4a LINE L1 5615 5913 -1895 26 0 0 0 chr1 181281311 181281337 -100912327 + AT_rich Low_complexity Low_complexity 1 26 0 1255 282 103 43 chr1 181282168 181283424 -100910240 + HAL1 LINE L1 822 2152 -355 384 269 31 74 chr1 181283713 181283744 -100909920 + HAL1 LINE L1 2227 2258 -249 1535 153 4 12 chr1 181283744 181284039 -100909625 - AluSx SINE Alu 0 330 38 384 269 31 74 chr1 181284039 181284262 -100909402 + HAL1 LINE L1 2258 2471 -36 2888 86 0 0 chr1 181284803 181285189 -100908475 + L1PA7 LINE L1 5769 6154 0 267 386 7 7 chr1 181285200 181285353 -100908311 + L3 LINE CR1 666 818 -759 1895 147 55 33 chr1 181288017 181288384 -100905280 - THE1C LTR MaLR 0 375 1 520 224 17 35 chr1 181289542 181289658 -100904006 - L2 LINE L2 0 3313 3200 241 153 24 82 chr1 181290683 181290768 -100902896 - MER116 DNA Mariner 0 80 1 252 239 0 30 chr1 181291042 181291109 -100902555 + GA-rich Low_complexity Low_complexity 2 66 0 270 242 63 105 chr1 181291295 181291485 -100902179 - MLT1L LTR MaLR -230 385 204 207 0 0 0 chr1 181291613 181291636 -100902028 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 504 223 58 16 chr1 181292550 181292671 -100900993 + L2 LINE L2 3188 3313 0 22 35 0 0 chr1 181293098 181293127 -100900537 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr1 181293159 181293190 -100900474 + (TG)n Simple_repeat Simple_repeat 2 32 0 937 188 71 44 chr1 181293277 181293742 -100899922 - MLT1F1 LTR MaLR -43 524 5 552 178 0 62 chr1 181293948 181294077 -100899587 + L1MCb LINE L1 499 619 -5426 1444 159 0 5 chr1 181294098 181294318 -100899346 + AluSg/x SINE Alu 85 303 -9 1909 197 51 21 chr1 181294320 181294792 -100898872 + L1MCb LINE L1 621 1106 -4939 833 228 19 0 chr1 181294789 181294995 -100898669 - L1MCa LINE L1 -5290 1136 927 * 2906 236 50 29 chr1 181295006 181296156 -100897508 + L1MCb LINE L1 2876 4049 -2515 * 3297 214 76 19 chr1 181296149 181297811 -100895853 + L1MCb LINE L1 4406 6171 -746 24964 35 1 0 chr1 181297820 181301764 -100891900 - L1PA3 LINE L1 -3 6152 2207 912 174 28 0 chr1 181301865 181302009 -100891655 - AluJb SINE Alu -49 263 116 2100 251 49 20 chr1 181302015 181302725 -100890939 + MER20B DNA MER1_type 53 783 0 210 410 16 8 chr1 181303162 181303284 -100890380 + L2 LINE L2 2937 3059 -213 185 209 11 33 chr1 181303370 181303461 -100890203 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 2375 61 0 35 chr1 181303719 181304082 -100889582 - AluY SINE Alu 0 352 1 806 182 53 0 chr1 181304462 181304632 -100889032 - MER3 DNA MER1_type -1 208 30 375 19 0 0 chr1 181304632 181304685 -100888979 - L1PA4 LINE L1 -113 6042 5990 796 50 0 0 chr1 181304685 181304784 -100888880 + L1PA5 LINE L1 6054 6153 -1 246 186 0 0 chr1 181304789 181304832 -100888832 - MER3 DNA MER1_type -166 43 1 399 323 205 0 chr1 181305327 181305488 -100888176 + MER91A DNA MER1_type 1 194 -2 1683 212 144 12 chr1 181305574 181305985 -100887679 + MLT1D LTR MaLR 35 499 -6 2346 61 0 51 chr1 181306113 181306426 -100887238 + AluY SINE Alu 1 297 -14 300 319 88 49 chr1 181307914 181308118 -100885546 + L2 LINE L2 2551 2762 -552 1891 9 0 0 chr1 181308673 181308887 -100884777 - L1PA2 LINE L1 -2 6153 5940 511 345 125 13 chr1 181308897 181309201 -100884463 + L2 LINE L2 2935 3272 0 1516 127 13 4 chr1 181309557 181309785 -100883879 + MER30 DNA MER1_type 1 230 0 276 200 91 0 chr1 181312089 181312144 -100881520 - L2 LINE L2 0 3272 3213 182 176 0 0 chr1 181312116 181312150 -100881514 - MIR SINE MIR -26 236 203 * 734 203 51 19 chr1 181312272 181312430 -100881234 + FAM SINE Alu 1 40 -9 284 200 0 0 chr1 181312557 181312607 -100881057 + Charlie3 DNA MER1_type 1 50 -2660 254 300 91 28 chr1 181315920 181316182 -100877482 - L2 LINE L2 -231 3041 2767 668 233 107 6 chr1 181316334 181316493 -100877171 - MER45A DNA AcHobo 0 178 4 227 266 16 0 chr1 181316846 181316910 -100876754 + GA-rich Low_complexity Low_complexity 2 66 0 2376 172 38 2 chr1 181317439 181317887 -100875777 + L1MC1 LINE L1 5854 6317 -16 925 224 0 0 chr1 181318785 181318950 -100874714 + FRAM SINE Alu 1 165 -11 204 158 26 0 chr1 181319141 181319179 -100874485 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 808 286 75 41 chr1 181319217 181319802 -100873862 - L1ME4a LINE L1 -196 5925 5315 211 194 0 0 chr1 181319858 181319894 -100873770 + (CA)n Simple_repeat Simple_repeat 2 37 0 332 314 70 27 chr1 181320036 181320221 -100873443 - L1ME4a LINE L1 -1077 5069 4877 359 143 16 0 chr1 181321412 181321475 -100872189 + MER68 LTR ERV1 1 64 -498 189 0 0 0 chr1 181321521 181321542 -100872122 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 272 324 50 7 chr1 181321549 181321688 -100871976 + L1M4 LINE L1 4012 4156 -1990 2773 200 103 20 chr1 181321698 181322477 -100871187 + L1MC4 LINE L1 7057 7899 -143 431 184 10 19 chr1 181322480 181322583 -100871081 + L1ME3 LINE L1 5920 6021 -141 427 209 0 0 chr1 181322581 181322667 -100870997 - L1MC4 LINE L1 -525 7517 7432 * 505 200 9 18 chr1 181322679 181322789 -100870875 + L1ME3A LINE L1 6054 6162 -8 348 24 0 0 chr1 181322839 181322880 -100870784 + (CA)n Simple_repeat Simple_repeat 2 42 0 455 236 79 36 chr1 181323318 181323458 -100870206 - L2 LINE L2 0 3313 3168 337 330 34 8 chr1 181323502 181323620 -100870044 - L2 LINE L2 -288 3025 2905 350 220 18 55 chr1 181323665 181323774 -100869890 + L2 LINE L2 3207 3311 -2 330 358 49 0 chr1 181323772 181323976 -100869688 - L2 LINE L2 -413 2901 2688 * 2133 133 0 13 chr1 181324375 181324691 -100868973 - AluSx SINE Alu 0 312 1 463 290 8 15 chr1 181325197 181325328 -100868336 - MIR SINE MIR -96 166 37 4209 150 58 56 chr1 181325345 181326127 -100867537 + LTR39 LTR ERV1 1 783 0 2649 161 26 2 chr1 181327117 181327533 -100866131 - MSTB LTR MaLR 0 426 1 589 237 9 0 chr1 181328424 181328538 -100865126 - MER5B DNA MER1_type 0 178 64 210 150 0 0 chr1 181330390 181330430 -100863234 + (TG)n Simple_repeat Simple_repeat 2 41 0 307 275 11 0 chr1 181331200 181331291 -100862373 + GA-rich Low_complexity Low_complexity 1 92 0 679 226 31 13 chr1 181331908 181332067 -100861597 - MER5B DNA MER1_type -16 162 1 958 202 134 14 chr1 181332422 181332645 -100861019 + MIR SINE MIR 2 251 -11 212 0 36 0 chr1 181332650 181332678 -100860986 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 2234 80 0 10 chr1 181332890 181333191 -100860473 + AluY SINE Alu 1 298 -13 236 336 80 8 chr1 181333301 181333426 -100860238 - MER5A DNA MER1_type -40 149 16 1106 255 17 0 chr1 181335303 181335538 -100858126 - MIR SINE MIR -19 243 5 745 297 44 48 chr1 181336015 181336449 -100857215 - MLT1K LTR MaLR -25 563 132 209 322 134 34 chr1 181336864 181337013 -100856651 + MIR3 SINE MIR 27 190 -18 293 0 27 0 chr1 181337957 181337994 -100855670 + (CA)n Simple_repeat Simple_repeat 2 39 0 2368 38 0 0 chr1 181338759 181339022 -100854642 - L1PA3 LINE L1 0 6155 5893 1184 294 66 7 chr1 181339235 181339434 -100854230 + L2 LINE L2 1229 1415 -1899 1272 291 70 19 chr1 181339434 181339918 -100853746 + MLT1J LTR MaLR 1 509 -2 1184 294 66 7 chr1 181339918 181340171 -100853493 + L2 LINE L2 1415 1708 -1606 207 186 0 0 chr1 181340182 181340225 -100853439 + GA-rich Low_complexity Low_complexity 2 44 0 401 335 68 0 chr1 181340246 181340422 -100853242 + L2 LINE L2 1806 1993 -1321 2363 113 0 3 chr1 181340429 181340740 -100852924 - AluSg SINE Alu 0 310 1 2035 139 55 30 chr1 181340836 181341202 -100852462 + THE1C LTR MaLR 1 375 0 8798 194 32 38 chr1 181341204 181342792 -100850872 + THE1C-int LTR MaLR 3 1580 0 1619 183 57 46 chr1 181342792 181343163 -100850501 + THE1C LTR MaLR 1 375 0 415 231 58 25 chr1 181343179 181343300 -100850364 + MLT1K LTR MaLR 402 526 -62 751 130 0 0 chr1 181344193 181344301 -100849363 + AluSg/x SINE Alu 195 302 -8 184 276 35 0 chr1 181344701 181344759 -100848905 + L2 LINE L2 3213 3272 0 439 338 90 25 chr1 181345485 181345763 -100847901 + HAL1 LINE L1 1158 1453 -1054 322 298 48 34 chr1 181345839 181346047 -100847617 + L1ME LINE L1 3600 3810 -2336 7395 109 26 17 chr1 181346528 181347589 -100846075 - MER11C LTR ERVK 0 1071 1 411 311 115 23 chr1 181347849 181348379 -100845285 + L1ME LINE L1 3999 4577 -1569 360 264 113 0 chr1 181348389 181348495 -100845169 + L1ME LINE L1 5600 5717 -453 282 284 53 65 chr1 181449261 181449430 -100744234 - L2 LINE L2 -19 3294 3128 2203 112 0 0 chr1 181449490 181449794 -100743870 + AluSx SINE Alu 1 304 -8 27 0 0 0 chr1 181451673 181451700 -100741964 + AT_rich Low_complexity Low_complexity 1 27 0 202 229 0 0 chr1 181452049 181452097 -100741567 + (TA)n Simple_repeat Simple_repeat 2 49 0 459 0 0 0 chr1 181452782 181452833 -100740831 + (CA)n Simple_repeat Simple_repeat 2 52 0 595 289 68 5 chr1 181455290 181455480 -100738184 - MIR SINE MIR -12 250 49 353 288 23 8 chr1 181455804 181455936 -100737728 - L3 LINE CR1 -72 1505 1372 2205 98 7 0 chr1 181456164 181456469 -100737195 - AluSg SINE Alu -3 307 1 421 356 7 0 chr1 181456846 181456995 -100736669 - L3 LINE CR1 -975 602 453 688 148 7 26 chr1 181456996 181457151 -100736513 + CT-rich Low_complexity Low_complexity 3 154 0 933 239 43 50 chr1 181457163 181457443 -100736221 + MLT2B2 LTR ERVL 220 497 -18 195 349 197 8 chr1 181458009 181458364 -100735300 + L2 LINE L2 2819 3240 -32 2258 96 3 6 chr1 181463715 181464028 -100729636 + AluSx SINE Alu 1 312 0 483 309 90 11 chr1 181464166 181464354 -100729310 + L3 LINE CR1 1374 1576 -1 323 287 59 52 chr1 181464465 181464601 -100729063 - L2 LINE L2 -15 3298 3162 1367 109 36 9 chr1 181465164 181465385 -100728279 + L1MA8 LINE L1 5599 5825 -466 1316 190 4 16 chr1 181465385 181465643 -100728021 + AluJo SINE Alu 1 255 -57 2361 151 12 60 chr1 181465902 181466039 -100727625 + L1MA8 LINE L1 5815 5957 -334 2417 57 0 10 chr1 181466039 181466353 -100727311 + AluY SINE Alu 1 311 0 2361 151 12 60 chr1 181466353 181466547 -100727117 + L1MA8 LINE L1 5957 6117 -174 2230 83 0 0 chr1 181466547 181466835 -100726829 + AluSc SINE Alu 1 288 -21 2361 151 12 60 chr1 181466835 181466999 -100726665 + L1MA8 LINE L1 6117 6287 -4 311 287 60 49 chr1 181467081 181467441 -100726223 - LTR16B LTR ERVL -6 458 27 1850 154 0 13 chr1 181467664 181467969 -100725695 - AluJo SINE Alu -11 301 1 2978 26 0 0 chr1 181469231 181469571 -100724093 - L1PA4 LINE L1 -12 6143 5804 1983 113 34 0 chr1 181469666 181469958 -100723706 - AluSg SINE Alu -8 302 1 822 261 91 16 chr1 181470064 181470317 -100723347 + LTR16C LTR ERVL 220 491 0 221 355 28 14 chr1 181470858 181471041 -100722623 - L2 LINE L2 -337 2976 2792 2022 106 3 3 chr1 181471081 181471373 -100722291 + AluSg SINE Alu 1 292 -18 315 123 18 0 chr1 181471565 181471622 -100722042 + AluS SINE Alu 1 58 -243 299 329 117 17 chr1 181471750 181471990 -100721674 - L2 LINE L2 -1729 1585 1322 575 217 23 8 chr1 181471991 181472120 -100721544 - MER94 DNA DNA -3 131 1 469 280 27 47 chr1 181472277 181472427 -100721237 + MIR SINE MIR 116 262 0 343 318 21 78 chr1 181472914 181472982 -100720682 + MER5A DNA MER1_type 8 78 -111 2106 114 0 3 chr1 181472982 181473288 -100720376 + AluSg SINE Alu 1 305 -5 343 318 21 78 chr1 181473288 181473411 -100720253 + MER5A DNA MER1_type 78 188 -1 302 282 59 0 chr1 181473826 181473911 -100719753 - MIR SINE MIR -78 130 41 533 257 80 44 chr1 181474285 181474534 -100719130 - L2 LINE L2 -3 3310 3053 6969 161 24 22 chr1 181475026 181476347 -100717317 - L1MA7 LINE L1 -2 6289 4962 1079 50 14 0 chr1 181476347 181476487 -100717177 - L1PA6 LINE L1 -5 6149 6008 6969 161 24 22 chr1 181476487 181477494 -100716170 - L1MA7 LINE L1 -1329 4962 3958 1980 128 35 3 chr1 181477972 181478254 -100715410 + AluSx SINE Alu 3 293 -19 1681 134 7 60 chr1 181478966 181479298 -100714366 + AluJb SINE Alu 1 316 0 1662 231 90 65 chr1 181479966 181480525 -100713139 - MER77 LTR ERV1 -7 598 52 200 216 20 0 chr1 181482679 181482730 -100710934 - MIR3 SINE MIR -6 202 151 201 215 25 13 chr1 181483456 181483535 -100710129 + CT-rich Low_complexity Low_complexity 5 84 0 235 266 16 0 chr1 181484382 181484446 -100709218 - L2 LINE L2 0 3272 3208 270 0 0 0 chr1 181485292 181485322 -100708342 + (TG)n Simple_repeat Simple_repeat 2 31 0 586 270 56 63 chr1 181485345 181485630 -100708034 + L1MC4a LINE L1 5682 5964 -157 410 157 205 12 chr1 181485995 181486239 -100707425 + FLAM_A SINE Alu 18 277 0 181 232 74 53 chr1 181487141 181487236 -100706428 + L3b LINE CR1 1350 1446 -137 2402 85 3 0 chr1 181489886 181490179 -100703485 - AluSp SINE Alu -19 294 1 2369 150 13 3 chr1 181490376 181490756 -100702908 + MLT1B LTR MaLR 1 384 -6 877 250 46 58 chr1 181491070 181491418 -100702246 + LTR16B LTR ERVL 111 454 -10 2504 82 0 0 chr1 181492087 181492393 -100701271 + AluSc SINE Alu 1 306 -3 239 240 0 0 chr1 181492866 181492916 -100700748 + LTR67 LTR ERVL 494 543 -14 237 246 31 0 chr1 181492916 181492931 -100700733 + MLT1K LTR MaLR 522 588 0 1414 167 40 50 chr1 181493460 181493759 -100699905 + MLT1D LTR MaLR 1 296 -209 1323 180 83 7 chr1 181493869 181494169 -100699495 + MER33 DNA MER1_type 1 323 -1 3366 128 23 11 chr1 181495223 181495792 -100697872 + L1MB3 LINE L1 5597 6172 -11 743 257 222 22 chr1 181496491 181497126 -100696538 + LTR50 LTR ERVL 3 787 -8 1638 233 69 75 chr1 181497149 181497804 -100695860 + MLT1E1 LTR MaLR 3 654 0 2055 125 14 0 chr1 181498151 181498462 -100695202 + AluSx SINE Alu 3 317 0 582 189 38 0 chr1 181498940 181499046 -100694618 + FLAM_C SINE Alu 3 112 -31 22 0 0 0 chr1 181499254 181499276 -100694388 + AT_rich Low_complexity Low_complexity 1 22 0 2382 216 83 82 chr1 181499306 181500085 -100693579 - MER21B LTR ERV1 -63 800 21 231 319 78 12 chr1 181500140 181500306 -100693358 + L1M4 LINE L1 2130 2306 -3840 379 277 59 33 chr1 181500548 181500819 -100692845 + L1M4 LINE L1 2687 2964 -3182 2393 162 8 2 chr1 181500854 181501255 -100692409 + MER57A LTR ERV1 1 403 0 337 232 0 21 chr1 181501281 181501376 -100692288 - MIR SINE MIR 0 262 170 837 250 94 64 chr1 181501626 181502030 -100691634 + LTR16C LTR ERVL 71 486 -5 2421 96 3 0 chr1 181502060 181502372 -100691292 + AluSp SINE Alu 1 313 0 431 298 109 15 chr1 181502837 181503176 -100690488 + L1M4 LINE L1 3683 4053 -2093 22 0 0 0 chr1 181503343 181503365 -100690299 + AT_rich Low_complexity Low_complexity 1 22 0 1853 166 0 32 chr1 181503426 181503734 -100689930 + AluJo SINE Alu 1 298 -14 852 140 28 56 chr1 181503791 181503969 -100689695 - MER89 LTR ERV1 0 559 387 417 152 29 67 chr1 181503969 181503998 -100689666 + MLT1A1 LTR MaLR 1 30 -344 285 29 0 0 chr1 181503998 181504032 -100689632 + (CA)n Simple_repeat Simple_repeat 1 34 0 417 152 29 67 chr1 181504032 181504099 -100689565 + MLT1A1 LTR MaLR 30 93 -281 1608 82 52 9 chr1 181504099 181504159 -100689505 - MLT2A2 LTR ERVL 0 453 397 324 0 0 0 chr1 181504159 181504195 -100689469 + (TA)n Simple_repeat Simple_repeat 2 37 0 1608 82 52 9 chr1 181504195 181504367 -100689297 - MLT2A2 LTR ERVL -56 397 211 2075 89 14 0 chr1 181504367 181504648 -100689016 - THE1B-int LTR MaLR -1295 285 1 2069 128 71 34 chr1 181504648 181504999 -100688665 - THE1B LTR MaLR 0 364 1 1216 195 49 15 chr1 181505000 181505267 -100688397 + MLT1A1 LTR MaLR 90 365 0 849 227 37 3 chr1 181505267 181505546 -100688118 - MER89 LTR ERV1 -168 391 4 338 298 71 40 chr1 181506440 181506612 -100687052 + L1M4 LINE L1 4377 4542 -1604 2541 47 0 3 chr1 181506612 181506909 -100686755 - AluY SINE Alu -15 296 1 338 298 71 40 chr1 181506909 181507156 -100686508 + L1M4 LINE L1 4542 4809 -1337 235 208 13 65 chr1 181507170 181507246 -100686418 - MLT1J LTR MaLR -3 508 437 3122 154 30 49 chr1 181507246 181507842 -100685822 - MER34C LTR ERV1 0 585 1 891 286 120 39 chr1 181507842 181508226 -100685438 - MLT1J LTR MaLR -71 440 26 273 260 77 53 chr1 181509000 181509169 -100684495 + L1ME4a LINE L1 5946 6118 -3 315 153 102 136 chr1 181509695 181509813 -100683851 + MLT1C LTR MaLR 1 114 -353 1690 182 11 95 chr1 181511181 181511550 -100682114 + MLT2B3 LTR ERVL 217 554 0 523 341 22 42 chr1 181511568 181511991 -100681673 + L2 LINE L2 2649 3061 -211 1392 173 75 75 chr1 181512006 181512059 -100681605 + MLT2D LTR ERVL 1 53 -361 1526 201 17 7 chr1 181512059 181512357 -100681307 - AluJb SINE Alu -9 303 3 1392 173 75 75 chr1 181512357 181512675 -100680989 + MLT2D LTR ERVL 53 375 -39 246 32 0 0 chr1 181512675 181512706 -100680958 + (CA)n Simple_repeat Simple_repeat 2 32 0 1392 173 75 75 chr1 181512706 181512744 -100680920 + MLT2D LTR ERVL 374 411 -3 220 295 0 53 chr1 181512838 181512933 -100680731 + L2 LINE L2 3181 3270 -2 303 294 29 52 chr1 181513092 181513228 -100680436 - L2 LINE L2 -216 3056 2924 222 304 58 0 chr1 181513924 181513993 -100679671 + L2 LINE L2 3137 3209 -63 270 258 16 0 chr1 181515406 181515468 -100678196 + ORSL DNA AcHobo 4 66 -209 1370 105 8 71 chr1 181515468 181515706 -100677958 - AluJo SINE Alu -2 310 88 406 185 65 56 chr1 181515753 181515861 -100677803 + ORSL DNA AcHobo 165 273 -2 27 0 0 0 chr1 181516189 181516216 -100677448 + AT_rich Low_complexity Low_complexity 1 27 0 468 291 103 11 chr1 181516648 181516823 -100676841 - MIR SINE MIR -52 210 20 221 322 33 22 chr1 181517350 181517440 -100676224 + MIR SINE MIR 38 128 -80 1044 157 0 0 chr1 181517708 181517861 -100675803 - FRAM SINE Alu -15 161 9 405 253 80 7 chr1 181518449 181518599 -100675065 - MIR SINE MIR -4 258 98 212 330 41 0 chr1 181519827 181519924 -100673740 - L3 LINE CR1 -5 1572 1472 2041 198 115 36 chr1 181521274 181521780 -100671884 - MLT2B3 LTR ERVL 0 554 9 302 298 41 23 chr1 181521799 181522017 -100671647 + L1ME4a LINE L1 4109 4330 -1816 728 308 118 21 chr1 181522018 181522307 -100671357 - MER102a DNA MER1_type -13 317 1 6099 132 35 6 chr1 181522565 181523615 -100670049 + L1MA4A LINE L1 5219 6298 -5 549 279 105 55 chr1 181523763 181524165 -100669499 + L1ME4a LINE L1 5256 5698 -423 1584 173 73 0 chr1 181524165 181524437 -100669227 - AluJo SINE Alu -20 292 1 549 279 105 55 chr1 181524437 181524589 -100669075 + L1ME4a LINE L1 5698 5841 -280 2106 134 0 0 chr1 181524612 181524904 -100668760 + AluSx SINE Alu 1 292 -20 270 136 0 0 chr1 181524904 181524948 -100668716 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 1762 160 0 77 chr1 181524957 181525294 -100668370 + AluJb SINE Alu 1 311 -1 22 35 0 0 chr1 181525334 181525363 -100668301 + AT_rich Low_complexity Low_complexity 1 29 0 273 208 100 54 chr1 181525404 181525534 -100668130 + L1ME4a LINE L1 5974 6109 -12 1963 147 0 35 chr1 181526240 181526553 -100667111 + AluJo SINE Alu 1 302 -10 216 333 73 0 chr1 181526579 181526675 -100666989 + L2 LINE L2 2045 2147 -1167 386 300 86 49 chr1 181526796 181527238 -100666426 + L2 LINE L2 2476 3001 -271 207 100 0 0 chr1 181527858 181527888 -100665776 + (TC)n Simple_repeat Simple_repeat 1 30 0 197 62 0 31 chr1 181530074 181530106 -100663558 + (GGAAA)n Simple_repeat Simple_repeat 5 35 0 1842 185 9 3 chr1 181530107 181530426 -100663238 + MLT1A1 LTR MaLR 45 365 0 1110 162 49 25 chr1 181530426 181530630 -100663034 - MER20 DNA MER1_type -8 211 3 244 301 136 80 chr1 181530645 181530858 -100662806 + MIR SINE MIR 32 256 -6 207 229 0 42 chr1 181530874 181530922 -100662742 - L2 LINE L2 -1 3271 3226 495 331 40 64 chr1 181531099 181531199 -100662465 - L2 LINE L2 -236 3036 2935 2086 118 0 14 chr1 181531199 181531488 -100662176 + AluSx SINE Alu 1 285 -27 261 0 0 0 chr1 181531488 181531517 -100662147 + (CA)n Simple_repeat Simple_repeat 2 30 0 495 331 40 64 chr1 181531517 181532021 -100661643 - L2 LINE L2 -335 2937 2402 405 291 101 7 chr1 181532281 181532429 -100661235 + L2 LINE L2 3111 3272 0 277 266 89 17 chr1 181532547 181532680 -100660984 + MIR SINE MIR 39 143 -65 797 258 54 106 chr1 181532889 181533370 -100660294 + L2 LINE L2 2856 3311 -2 429 277 63 0 chr1 181533436 181533577 -100660087 + MIR SINE MIR 17 164 -66 24 0 0 0 chr1 181534311 181534335 -100659329 + AT_rich Low_complexity Low_complexity 1 24 0 404 304 162 11 chr1 181534423 181534614 -100659050 - MIR SINE MIR -25 237 18 250 297 69 0 chr1 181535091 181535192 -100658472 + MIR SINE MIR 95 202 -60 373 243 103 28 chr1 181535606 181535820 -100657844 + L1MC4 LINE L1 7762 7991 -51 1609 181 52 0 chr1 181535835 181536122 -100657542 + AluJo SINE Alu 1 302 -10 1297 167 144 16 chr1 181536134 181536391 -100657273 - AluJo SINE Alu -11 291 2 2161 71 14 11 chr1 181538666 181538946 -100654718 - AluY SINE Alu -5 306 26 219 69 0 0 chr1 181539049 181539078 -100654586 + (T)n Simple_repeat Simple_repeat 1 29 0 1112 184 0 10 chr1 181539094 181539295 -100654369 - AluJo SINE Alu -103 209 11 432 175 29 29 chr1 181541636 181541739 -100651925 + MER53 DNA DNA 87 189 0 251 325 65 13 chr1 181541782 181541936 -100651728 + L2 LINE L2 2897 3058 -214 180 77 0 0 chr1 181542950 181542976 -100650688 + (ATG)n Simple_repeat Simple_repeat 2 27 0 537 229 233 33 chr1 181542987 181543197 -100650467 - MIR SINE MIR -1 261 10 27 0 0 0 chr1 181543531 181543558 -100650106 + AT_rich Low_complexity Low_complexity 1 27 0 581 240 89 25 chr1 181543954 181544228 -100649436 + LTR33 LTR ERVL 1 360 -161 23 0 0 0 chr1 181545334 181545357 -100648307 + GC_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr1 181545643 181545671 -100647993 + (CA)n Simple_repeat Simple_repeat 2 29 0 260 211 19 0 chr1 181548238 181548290 -100645374 + MIR SINE MIR 56 108 -154 1900 144 14 0 chr1 181548884 181549176 -100644488 + AluJo SINE Alu 1 296 -16 560 284 95 9 chr1 181549543 181549775 -100643889 - MIR SINE MIR -9 253 2 301 243 0 14 chr1 181551226 181551300 -100642364 - MIR SINE MIR -118 90 18 239 314 145 0 chr1 181552323 181552447 -100641217 + MIR SINE MIR 95 236 -26 497 286 91 48 chr1 181552593 181552824 -100640840 + MIR SINE MIR 2 242 -20 313 212 59 12 chr1 181555539 181555624 -100638040 - MER91C DNA MER1_type -36 104 16 306 0 0 0 chr1 181561422 181561456 -100632208 + (TC)n Simple_repeat Simple_repeat 2 35 0 188 45 0 0 chr1 181561455 181561477 -100632187 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 274 264 21 97 chr1 181561611 181561755 -100631909 - L2 LINE L2 -3 3269 3137 549 259 123 6 chr1 181561931 181562093 -100631571 - MIR SINE MIR -21 241 61 2043 182 88 31 chr1 181566881 181567359 -100626305 - MLT1D LTR MaLR 0 505 1 234 224 10 71 chr1 181568240 181568338 -100625326 + L3 LINE CR1 1194 1285 -292 262 231 60 43 chr1 181569331 181569448 -100624216 - MIR SINE MIR -39 223 105 437 145 0 0 chr1 181571086 181571162 -100622502 - Alu SINE Alu -1 311 236 2225 80 0 7 chr1 181571162 181571436 -100622228 - AluSp SINE Alu -41 272 1 543 116 0 12 chr1 181571438 181571524 -100622140 - AluJb SINE Alu -179 133 49 437 239 26 65 chr1 181572308 181572463 -100621201 - MIR SINE MIR -78 184 36 374 224 112 35 chr1 181572559 181572675 -100620989 + MIR SINE MIR 126 250 -12 1546 83 0 22 chr1 181573207 181573460 -100620204 - L1PA6 LINE L1 0 6154 5931 1331 132 8 21 chr1 181573474 181573717 -100619947 - L1PA8 LINE L1 0 6172 5933 894 254 155 24 chr1 181573741 181574076 -100619588 + L2 LINE L2 2935 3313 0 215 273 0 0 chr1 181574467 181574524 -100619140 + G-rich Low_complexity Low_complexity 1 57 0 234 139 0 0 chr1 181574945 181574981 -100618683 - L2 LINE L2 -10 3303 3268 1995 88 0 4 chr1 181574981 181575272 -100618392 + AluSx SINE Alu 34 323 0 396 0 0 0 chr1 181575566 181575610 -100618054 + (CA)n Simple_repeat Simple_repeat 2 45 0 2151 322 107 24 chr1 181576783 181577027 -100616637 + L3 LINE CR1 120 342 -1235 1773 167 14 3 chr1 181577027 181577320 -100616344 + AluJo SINE Alu 1 296 -16 2151 322 107 24 chr1 181577320 181578340 -100615324 + L3 LINE CR1 342 1553 -24 22 0 0 0 chr1 181578547 181578569 -100615095 + AT_rich Low_complexity Low_complexity 1 22 0 332 231 228 0 chr1 181578570 181578694 -100614970 - MIR SINE MIR -74 188 28 1722 163 0 28 chr1 181580045 181580334 -100613330 - AluSx SINE Alu -31 281 1 357 330 124 5 chr1 181581314 181581499 -100612165 - MIR SINE MIR -51 211 5 326 337 70 72 chr1 181581508 181581989 -100611675 + L2 LINE L2 2721 3202 -70 411 38 0 0 chr1 181581989 181582042 -100611622 + (TA)n Simple_repeat Simple_repeat 2 54 0 326 337 70 72 chr1 181582042 181582112 -100611552 + L2 LINE L2 3202 3271 -1 1870 152 3 0 chr1 181582458 181582754 -100610910 - AluJo SINE Alu -15 297 1 1648 154 81 0 chr1 181583258 181583543 -100610121 - AluSc SINE Alu -1 308 1 284 291 246 15 chr1 181583656 181583855 -100609809 - MIR SINE MIR -6 256 12 462 265 39 16 chr1 181584978 181585131 -100608533 + MIR3 SINE MIR 1 158 -50 189 326 42 11 chr1 181585472 181585567 -100608097 - L3b LINE CR1 -209 1374 1277 234 0 0 0 chr1 181585929 181585955 -100607709 + (TG)n Simple_repeat Simple_repeat 2 27 0 205 331 66 15 chr1 181587651 181587787 -100605877 + L2 LINE L2 1881 2023 -1291 312 259 154 14 chr1 181587841 181587984 -100605680 + MIR SINE MIR 64 226 -36 282 305 103 82 chr1 181588746 181589028 -100604636 + L2 LINE L2 2917 3204 -68 484 308 65 22 chr1 181589102 181589287 -100604377 - MER117 DNA MER1_type -1 196 4 377 279 96 0 chr1 181589341 181589477 -100604187 + MIR SINE MIR 58 206 -56 229 239 159 23 chr1 181589537 181589625 -100604039 - MIR SINE MIR -66 142 43 435 281 88 60 chr1 181591028 181591277 -100602387 + L2 LINE L2 2804 3059 -213 336 296 103 45 chr1 181591342 181591565 -100602099 - MIR SINE MIR -26 236 1 423 339 8 0 chr1 181591566 181591693 -100601971 - MIR3 SINE MIR -11 197 70 258 286 62 67 chr1 181592200 181592378 -100601286 - L3b LINE CR1 -198 1385 1209 209 250 138 12 chr1 181593547 181593627 -100600037 + MIR SINE MIR 32 121 -87 294 224 80 88 chr1 181595980 181596105 -100597559 + MIR3 SINE MIR 15 120 -88 677 243 48 0 chr1 181596172 181596363 -100597301 - MIR SINE MIR -13 249 50 2452 178 67 20 chr1 181596496 181596991 -100596673 + Charlie1b DNA MER1_type 2 519 -4 264 215 51 13 chr1 181598928 181599007 -100594657 - MIR SINE MIR -180 82 1 272 343 19 52 chr1 181599220 181599433 -100594231 - L3b LINE CR1 -169 1414 1209 237 111 0 56 chr1 181602496 181602550 -100591114 + (CCGGG)n Simple_repeat Simple_repeat 3 53 0 277 358 163 27 chr1 181603857 181604748 -100588916 - L2 LINE L2 -556 2758 1747 2240 92 0 7 chr1 181604772 181605098 -100588566 + AluSx SINE Alu 1 312 0 1776 79 9 9 chr1 181605294 181605523 -100588141 + MER30 DNA MER1_type 1 229 -1 580 313 61 77 chr1 181605702 181605981 -100587683 + L2 LINE L2 2308 2575 -739 2219 146 54 57 chr1 181605981 181606354 -100587310 + MSTA LTR MaLR 5 378 -50 1488 171 3 48 chr1 181606354 181606670 -100586994 - AluJo SINE Alu 0 312 11 2219 146 54 57 chr1 181606670 181606721 -100586943 + MSTA LTR MaLR 378 428 0 580 313 61 77 chr1 181606721 181607001 -100586663 + L2 LINE L2 2575 2858 -456 233 323 169 42 chr1 181607035 181607391 -100586273 + L2 LINE L2 2128 2528 -786 338 321 38 9 chr1 181608129 181608235 -100585429 - MIR SINE MIR -128 134 26 2142 107 0 49 chr1 181609025 181609353 -100584311 + AluSx SINE Alu 1 312 0 2010 148 3 0 chr1 181610249 181610560 -100583104 - AluJb SINE Alu 0 312 1 247 261 0 0 chr1 181611193 181611258 -100582406 + (ATG)n Simple_repeat Simple_repeat 3 67 0 589 271 145 14 chr1 181611260 181611481 -100582183 - MIR SINE MIR -1 261 12 4654 131 68 4 chr1 181611940 181612739 -100580925 + L1MC1 LINE L1 5483 6332 -1 505 256 75 0 chr1 181612772 181612905 -100580759 + MIR SINE MIR 50 192 -70 333 273 129 8 chr1 181612954 181613086 -100580578 + L2 LINE L2 3121 3268 -4 311 246 105 9 chr1 181613264 181613378 -100580286 - MIR3 SINE MIR -49 159 35 180 152 0 0 chr1 181613630 181613663 -100580001 + T-rich Low_complexity Low_complexity 1 33 0 183 42 0 0 chr1 181614821 181614845 -100578819 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr1 181616396 181616419 -100577245 + GC_rich Low_complexity Low_complexity 1 23 0 584 330 13 13 chr1 181617475 181617708 -100575956 - MIR SINE MIR 0 262 30 1751 309 119 18 chr1 181618734 181619555 -100574109 + L3 LINE CR1 663 1566 -11 216 162 0 0 chr1 181620030 181620067 -100573597 + G-rich Low_complexity Low_complexity 5 41 0 204 67 0 0 chr1 181620298 181620328 -100573336 + (GGA)n Simple_repeat Simple_repeat 1 30 0 696 260 58 6 chr1 181620598 181620771 -100572893 - MER91A DNA MER1_type 0 196 15 880 214 39 0 chr1 181621379 181621557 -100572107 - MER5A DNA MER1_type 0 189 5 475 196 72 0 chr1 181622833 181622930 -100570734 + MIR SINE MIR 38 141 -67 449 318 13 20 chr1 181626636 181626787 -100566877 + L2 LINE L2 3115 3264 -8 552 238 81 19 chr1 181627080 181627240 -100566424 + MIR3 SINE MIR 24 193 -15 233 340 29 7 chr1 181628644 181628774 -100564890 - MIR SINE MIR -5 203 69 225 269 67 10 chr1 181629066 181629170 -100564494 + MIR SINE MIR 23 132 -76 327 257 183 0 chr1 181629469 181629584 -100564080 + MIR SINE MIR 16 149 -64 190 0 32 32 chr1 181630957 181630988 -100562676 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 309 291 13 26 chr1 181631080 181631231 -100562433 + C-rich Low_complexity Low_complexity 6 154 0 374 324 55 14 chr1 181631583 181631728 -100561936 + MIR SINE MIR 69 219 -43 262 114 0 0 chr1 181632149 181632193 -100561471 - MIR SINE MIR -117 145 102 418 235 8 42 chr1 181632706 181632825 -100560839 - MIR SINE MIR -120 142 28 378 310 110 14 chr1 181632877 181633022 -100560642 - L2 LINE L2 0 3272 3114 445 290 90 7 chr1 181634020 181634165 -100559499 - MIR SINE MIR -104 158 2 405 0 0 0 chr1 181634779 181634824 -100558840 + (TG)n Simple_repeat Simple_repeat 2 46 0 825 341 4 4 chr1 181635455 181635710 -100557954 - MIR SINE MIR 0 262 8 283 211 0 0 chr1 181635840 181635892 -100557772 + L2 LINE L2 3262 3313 0 324 48 0 0 chr1 181635971 181636013 -100557651 + (CA)n Simple_repeat Simple_repeat 1 42 0 295 302 75 38 chr1 181636634 181636793 -100556871 + L2 LINE L2 3106 3270 -2 265 338 169 7 chr1 181637143 181637218 -100556446 - MIR SINE MIR -76 186 124 1790 139 10 50 chr1 181637218 181637521 -100556143 + AluJo SINE Alu 1 291 -21 265 338 169 7 chr1 181637521 181637593 -100556071 - MIR SINE MIR -138 124 15 454 246 22 65 chr1 181637917 181638055 -100555609 + MIR SINE MIR 72 203 -59 267 333 9 9 chr1 181639118 181639226 -100554438 + MER5A DNA MER1_type 57 164 -25 230 335 0 55 chr1 181639357 181639521 -100554143 + L2 LINE L2 2945 3099 -173 384 259 103 7 chr1 181639704 181639840 -100553824 + MIR SINE MIR 5 160 -48 1236 188 76 36 chr1 181639864 181640140 -100553524 - MLT1A1 LTR MaLR -78 287 1 347 248 40 88 chr1 181640195 181640253 -100553411 + MER5B DNA MER1_type 1 51 -127 2307 108 0 0 chr1 181640253 181640549 -100553115 + AluSg SINE Alu 1 296 -14 347 248 40 88 chr1 181640549 181640615 -100553049 + MER5B DNA MER1_type 51 119 -59 203 265 20 0 chr1 181640685 181640734 -100552930 - MIR SINE MIR -94 114 65 388 327 0 0 chr1 181641037 181641144 -100552520 + L2 LINE L2 3207 3313 0 391 236 37 75 chr1 181642170 181642196 -100551468 - MIR3 SINE MIR -21 187 162 1910 92 59 29 chr1 181642196 181642468 -100551196 - AluY SINE Alu -7 304 25 391 236 37 75 chr1 181642468 181642602 -100551062 - MIR3 SINE MIR -46 162 33 717 197 46 0 chr1 181642959 181643111 -100550553 + AluJb SINE Alu 122 280 -32 1928 147 3 25 chr1 181643140 181643172 -100550492 - AluJb SINE Alu 0 312 281 237 33 0 0 chr1 181643172 181643202 -100550462 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1928 147 3 25 chr1 181643202 181643488 -100550176 - AluJb SINE Alu -31 281 1 209 217 0 0 chr1 181643560 181643606 -100550058 + A-rich Low_complexity Low_complexity 1 46 0 2270 85 4 0 chr1 181643728 181644056 -100549608 - AluSg SINE Alu 0 329 1 209 289 0 0 chr1 181644291 181644343 -100549321 + GA-rich Low_complexity Low_complexity 2 53 0 217 154 26 0 chr1 181644468 181644507 -100549157 + CT-rich Low_complexity Low_complexity 4 43 0 305 93 0 0 chr1 181644724 181644767 -100548897 - U2 snRNA snRNA -145 43 1 243 0 0 0 chr1 181645020 181645047 -100548617 + (TC)n Simple_repeat Simple_repeat 2 28 0 387 0 0 0 chr1 181645049 181645092 -100548572 + (CA)n Simple_repeat Simple_repeat 1 43 0 293 259 231 19 chr1 181647414 181647522 -100546142 + MIR3 SINE MIR 37 167 -41 207 88 0 0 chr1 181649023 181649057 -100544607 + (TG)n Simple_repeat Simple_repeat 1 34 0 1807 142 29 3 chr1 181650985 181651295 -100542369 + L1MC1 LINE L1 6011 6328 -5 243 0 0 0 chr1 181651336 181651363 -100542301 + (A)n Simple_repeat Simple_repeat 1 27 0 1258 179 40 70 chr1 181651812 181652114 -100541550 + AluJb SINE Alu 4 296 -16 612 251 70 6 chr1 181653372 181653543 -100540121 - MIR3 SINE MIR -7 201 20 479 318 81 0 chr1 181653704 181653877 -100539787 - MIR SINE MIR -13 249 63 1938 180 0 0 chr1 181653930 181654235 -100539429 + AluSx SINE Alu 2 306 -6 658 216 177 9 chr1 181654263 181654495 -100539169 + L2 LINE L2 3043 3313 0 201 288 10 156 chr1 181654506 181654711 -100538953 - L2 LINE L2 -78 3194 3020 907 173 6 0 chr1 181654756 181654912 -100538752 + FRAM SINE Alu 1 157 -9 244 365 58 0 chr1 181656834 181656938 -100536726 - MER91C DNA MER1_type 0 140 31 272 304 27 9 chr1 181656939 181657051 -100536613 - MIR SINE MIR -102 160 47 1159 209 126 13 chr1 181658208 181658510 -100535154 + MER2 DNA MER2_type 10 345 0 2083 138 3 7 chr1 181658546 181658850 -100534814 - AluJb SINE Alu -9 303 1 273 316 32 0 chr1 181658987 181659082 -100534582 - MIR SINE MIR -11 251 154 191 329 119 52 chr1 181660377 181660587 -100533077 + L2 LINE L2 2135 2358 -956 1714 93 0 0 chr1 181661653 181661867 -100531797 + AluSg/x SINE Alu 84 297 -13 405 240 0 0 chr1 181661869 181661969 -100531695 - Charlie5 DNA MER1_type -157 2455 2356 646 241 75 11 chr1 181661974 181662161 -100531503 - Charlie5 DNA MER1_type -2412 200 2 234 286 84 51 chr1 181662231 181662409 -100531255 - L2 LINE L2 -5 3308 3125 317 311 78 56 chr1 181662516 181662696 -100530968 - MIR SINE MIR -22 240 57 2348 109 0 3 chr1 181662848 181663161 -100530503 + AluSq SINE Alu 1 312 -1 2346 98 0 7 chr1 181664246 181664551 -100529113 - AluSq SINE Alu -10 303 1 323 329 82 27 chr1 181664616 181664762 -100528902 + L2 LINE L2 3117 3270 -2 2725 51 0 6 chr1 181664806 181665119 -100528545 + AluY SINE Alu 1 311 0 195 100 0 0 chr1 181665241 181665271 -100528393 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 319 302 114 7 chr1 181665424 181665573 -100528091 + L1M4 LINE L1 2855 3019 -3127 1198 241 64 11 chr1 181665631 181665992 -100527672 + L2 LINE L2 580 959 -2355 640 245 16 22 chr1 181665975 181666159 -100527505 + L2 LINE L2 3131 3313 0 * 342 326 38 8 chr1 181666718 181666850 -100526814 + MIR3 SINE MIR 9 144 -64 2350 107 0 0 chr1 181667128 181667427 -100526237 - AluSc SINE Alu -10 299 1 2220 95 7 0 chr1 181667442 181667747 -100525917 - AluSp SINE Alu 0 307 1 214 316 18 0 chr1 181668536 181668593 -100525071 - L3 LINE CR1 -4 1573 1516 251 216 0 0 chr1 181669952 181670003 -100523661 + 5S rRNA rRNA 35 85 -36 293 191 127 27 chr1 181670040 181670150 -100523514 + MIR3 SINE MIR 11 131 -77 742 248 92 16 chr1 181670172 181670422 -100523242 + L2 LINE L2 3045 3313 0 470 245 147 0 chr1 181672818 181672961 -100520703 + L2 LINE L2 3109 3272 0 445 195 201 20 chr1 181673573 181673722 -100519942 + MER5A DNA MER1_type 14 189 0 734 200 12 6 chr1 181673732 181673892 -100519772 - MER5B DNA MER1_type -3 175 15 2287 121 0 3 chr1 181674937 181675242 -100518422 + AluSx SINE Alu 1 304 -8 2195 117 3 0 chr1 181675559 181675849 -100517815 - AluSg SINE Alu -15 295 5 1096 168 0 0 chr1 181676051 181676218 -100517446 - AluJb SINE Alu -11 301 135 2565 90 0 0 chr1 181676218 181676530 -100517134 - AluSx SINE Alu 0 312 1 317 311 78 56 chr1 181676682 181676862 -100516802 + MIR SINE MIR 57 240 -22 234 286 84 51 chr1 181676969 181677147 -100516517 + L2 LINE L2 3125 3308 -5 673 230 75 11 chr1 181677217 181677404 -100516260 + Charlie5 DNA MER1_type 2 200 -2412 405 240 0 0 chr1 181677409 181677509 -100516155 + Charlie5 DNA MER1_type 2356 2455 -157 2305 94 7 3 chr1 181677511 181677810 -100515854 - AluSp SINE Alu -13 300 1 1085 162 9 22 chr1 181677815 181678037 -100515627 - MLT-int LTR MaLR -1386 349 131 1047 160 0 0 chr1 181678183 181678333 -100515331 + FRAM SINE Alu 6 155 -21 872 89 42 47 chr1 181678346 181678536 -100515128 + Charlie5 DNA MER1_type 2397 2585 -27 2377 83 0 20 chr1 181678886 181679188 -100514476 - AluSg SINE Alu -14 296 1 250 215 37 112 chr1 181679247 181679282 -100514382 + L2 LINE L2 3146 3182 -90 2129 120 27 10 chr1 181679282 181679417 -100514247 + AluSx SINE Alu 1 132 -180 2301 101 0 13 chr1 181679417 181679724 -100513940 + AluSg SINE Alu 1 303 -7 2129 120 27 10 chr1 181679724 181679887 -100513777 + AluSx SINE Alu 132 304 -8 250 215 37 112 chr1 181679887 181679958 -100513706 + L2 LINE L2 3182 3244 -28 198 222 0 0 chr1 181681148 181681184 -100512480 - MIR SINE MIR -76 132 97 509 137 53 0 chr1 181687710 181687841 -100505823 + (CA)n Simple_repeat Simple_repeat 1 138 0 210 77 62 31 chr1 181687859 181687924 -100505740 + (CA)n Simple_repeat Simple_repeat 2 68 0 283 147 47 47 chr1 181688045 181688215 -100505449 + (CA)n Simple_repeat Simple_repeat 1 170 0 423 166 53 8 chr1 181688259 181688514 -100505150 + (CA)n Simple_repeat Simple_repeat 1 266 0 407 142 26 39 chr1 181688584 181688739 -100504925 + (CA)n Simple_repeat Simple_repeat 1 153 0 313 227 235 8 chr1 181689515 181689647 -100504017 - MIR3 SINE MIR -12 196 35 2268 108 6 16 chr1 181690298 181690613 -100503051 - AluSx SINE Alu 0 312 1 1065 164 71 0 chr1 181690690 181690873 -100502791 + MER20 DNA MER1_type 24 219 0 258 122 163 0 chr1 181690931 181690980 -100502684 - Alu SINE Alu -31 270 214 439 203 60 68 chr1 181691003 181691136 -100502528 + L2 LINE L2 3141 3272 0 2331 74 27 3 chr1 181691574 181691871 -100501793 + AluY SINE Alu 1 304 -7 2265 102 6 13 chr1 181692061 181692375 -100501289 + AluSx SINE Alu 1 312 0 245 273 162 0 chr1 181693346 181693445 -100500219 - MIR SINE MIR -62 146 32 301 322 48 62 chr1 181693951 181694159 -100499505 + L2 LINE L2 3000 3204 -68 813 211 6 23 chr1 181694566 181694737 -100498927 + FRAM SINE Alu 1 168 -8 268 256 88 51 chr1 181695894 181696031 -100497633 - L2 LINE L2 -10 3262 3121 480 295 97 63 chr1 181696095 181696363 -100497301 + L2 LINE L2 2991 3267 -5 23 20 8 0 chr1 181697040 181697110 -100496554 + AT_rich Low_complexity Low_complexity 1 30 0 288 130 0 0 chr1 181697137 181697183 -100496481 + (TA)n Simple_repeat Simple_repeat 1 46 0 2341 107 3 7 chr1 181697183 181697492 -100496172 - AluSx SINE Alu -4 308 1 291 273 173 13 chr1 181697782 181697932 -100495732 - MIR SINE MIR 0 262 89 201 132 0 0 chr1 181699364 181699402 -100494262 + (CGG)n Simple_repeat Simple_repeat 2 39 0 221 313 10 10 chr1 181701235 181701331 -100492333 + GA-rich Low_complexity Low_complexity 2 97 0 300 27 0 0 chr1 181703473 181703510 -100490154 + (CA)n Simple_repeat Simple_repeat 2 38 0 221 310 137 30 chr1 181706166 181706363 -100487301 - L2 LINE L2 -224 3048 2831 22 35 0 0 chr1 181710289 181710318 -100483346 + AT_rich Low_complexity Low_complexity 1 29 0 1008 188 109 0 chr1 181711335 181711537 -100482127 - MER58A DNA MER1_type 0 224 1 207 0 0 0 chr1 181715355 181715378 -100478286 + (A)n Simple_repeat Simple_repeat 1 23 0 517 214 183 24 chr1 181715552 181715804 -100477860 - L1MC4 LINE L1 -99 7943 7652 502 225 21 105 chr1 181717025 181717173 -100476491 + MER5B DNA MER1_type 2 132 -46 1810 125 26 76 chr1 181717173 181717477 -100476187 + AluJb SINE Alu 11 299 -13 502 225 21 105 chr1 181717477 181717519 -100476145 + MER5B DNA MER1_type 132 176 -2 662 314 39 0 chr1 181718857 181719061 -100474603 - MIR SINE MIR -44 218 7 1458 141 5 0 chr1 181719389 181719595 -100474069 - AluSg/x SINE Alu -18 294 88 392 295 0 0 chr1 181719989 181720067 -100473597 - L2 LINE L2 -29 3243 3166 477 333 33 19 chr1 181720191 181720404 -100473260 + L2 LINE L2 1705 1920 -1394 248 243 147 44 chr1 181720396 181720532 -100473132 - L2 LINE L2 -1010 2304 2155 * 213 354 10 10 chr1 181720672 181720768 -100472896 - L2 LINE L2 -1150 2164 2069 1158 177 43 5 chr1 181720883 181721092 -100472572 - AluJb SINE Alu -91 221 5 799 211 11 38 chr1 181721142 181721327 -100472337 - MER58A DNA MER1_type 0 224 45 1507 156 12 114 chr1 181721435 181721768 -100471896 - AluJo SINE Alu -3 299 1 2183 109 14 0 chr1 181722557 181722851 -100470813 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr1 181723257 181723279 -100470385 + AT_rich Low_complexity Low_complexity 1 22 0 2300 102 0 3 chr1 181723279 181723573 -100470091 + AluSq SINE Alu 1 293 -20 1967 165 3 10 chr1 181724290 181724593 -100469071 - AluSx SINE Alu -11 301 1 1907 135 6 61 chr1 181725565 181725876 -100467788 + AluSx SINE Alu 1 294 -18 1592 161 53 56 chr1 181725896 181726017 -100467647 + AluJb SINE Alu 1 121 -191 2289 112 0 0 chr1 181726017 181726313 -100467351 + AluSg SINE Alu 1 296 -14 1592 161 53 56 chr1 181726313 181726495 -100467169 + AluJb SINE Alu 121 303 -9 858 161 0 0 chr1 181726923 181727041 -100466623 + FLAM_C SINE Alu 1 118 -15 378 164 0 0 chr1 181727824 181727891 -100465773 + AluS SINE Alu 230 296 -5 182 323 123 0 chr1 181728399 181728464 -100465200 - MIR SINE MIR -95 113 41 23 0 0 0 chr1 181728675 181728698 -100464966 + AT_rich Low_complexity Low_complexity 1 23 0 2097 110 60 0 chr1 181728770 181729052 -100464612 - AluSx SINE Alu -13 299 1 280 297 74 29 chr1 181729083 181729258 -100464406 + L1MC4 LINE L1 5724 5906 -1902 2305 121 0 0 chr1 181729375 181729673 -100463991 - AluSx SINE Alu -14 298 1 204 97 0 0 chr1 181729889 181729920 -100463744 + (CA)n Simple_repeat Simple_repeat 1 31 0 291 244 0 0 chr1 181729925 181730003 -100463661 + (TA)n Simple_repeat Simple_repeat 1 78 0 304 304 36 9 chr1 181730008 181730120 -100463544 + L1MC4 LINE L1 6614 6728 -1314 207 262 146 10 chr1 181730143 181730246 -100463418 - MIR SINE MIR -114 148 32 28 48 0 0 chr1 181730398 181730440 -100463224 + AT_rich Low_complexity Low_complexity 1 42 0 242 343 121 14 chr1 181730880 181731020 -100462644 - L3b LINE CR1 -3 1580 1426 1647 179 0 42 chr1 181731165 181731473 -100462191 - AluJo SINE Alu -16 296 2 875 207 137 4 chr1 181732850 181733077 -100460587 - MIR SINE MIR -4 258 2 225 154 0 0 chr1 181733719 181733758 -100459906 + CT-rich Low_complexity Low_complexity 3 41 0 2234 78 43 0 chr1 181734517 181734798 -100458866 + AluY SINE Alu 1 293 -18 2301 97 3 7 chr1 181735595 181735895 -100457769 + AluSq SINE Alu 1 299 -14 1211 177 27 14 chr1 181736264 181736484 -100457180 - MER58A DNA MER1_type -1 223 1 222 173 25 37 chr1 181736907 181736988 -100456676 + GA-rich Low_complexity Low_complexity 3 82 0 984 104 0 15 chr1 181737043 181737178 -100456486 - FLAM_C SINE Alu 0 133 1 2336 75 27 0 chr1 181738250 181738543 -100455121 - AluY SINE Alu -10 301 1 2183 60 7 21 chr1 181739516 181739797 -100453867 + AluSp SINE Alu 26 302 -11 586 193 28 9 chr1 181740158 181740267 -100453397 + FLAM_A SINE Alu 11 121 -21 1300 167 100 18 chr1 181740334 181740615 -100453049 + AluJo SINE Alu 1 304 -8 1133 168 101 5 chr1 181741193 181741401 -100452263 - MER46A DNA MER2_type -8 228 1 468 199 65 86 chr1 181741260 181741446 -100452218 + MER46A DNA MER2_type 4 185 -51 * 1183 195 34 58 chr1 181741446 181741666 -100451998 + L1ME1 LINE L1 4950 5161 -985 2205 100 0 3 chr1 181741666 181741955 -100451709 + AluSx SINE Alu 9 296 -16 1183 195 34 58 chr1 181741955 181742062 -100451602 + L1ME1 LINE L1 5161 5269 -877 1749 108 119 4 chr1 181742193 181742461 -100451203 + AluSc SINE Alu 1 299 0 873 198 12 25 chr1 181742487 181742649 -100451015 + FRAM SINE Alu 1 160 -6 2060 124 10 3 chr1 181742649 181742947 -100450717 + AluSx SINE Alu 1 300 -12 2081 218 51 175 chr1 181742958 181743263 -100450401 + L1ME1 LINE L1 5374 5715 -451 707 194 0 0 chr1 181743263 181743392 -100450272 + FLAM_C SINE Alu 14 142 -1 2081 218 51 175 chr1 181743392 181743898 -100449766 + L1ME1 LINE L1 5715 6161 -5 2474 66 10 7 chr1 181743922 181744226 -100449438 + AluSp SINE Alu 1 305 -8 1679 156 45 24 chr1 181745218 181745507 -100448157 - AluJb SINE Alu -17 295 1 806 100 0 0 chr1 181746956 181747056 -100446608 + AluJ/FLAM SINE Alu 1 100 -212 1927 158 13 0 chr1 181747163 181747590 -100446074 - AluSx SINE Alu 0 433 3 321 98 82 33 chr1 181747592 181747653 -100446011 - L1MB8 LINE L1 -3 6175 6112 1893 162 0 13 chr1 181747653 181747962 -100445702 + AluJb SINE Alu 1 305 -7 4322 155 20 39 chr1 181748042 181748599 -100445065 - L1MB8 LINE L1 -54 6124 5585 2407 65 7 0 chr1 181748599 181748891 -100444773 - AluY SINE Alu -17 294 1 4322 155 20 39 chr1 181748891 181749161 -100444503 - L1MB8 LINE L1 -593 5585 5312 1982 131 32 0 chr1 181749181 181749464 -100444200 - AluSx SINE Alu -20 292 1 800 167 98 0 chr1 181749490 181749622 -100444042 - FAM SINE Alu -37 148 4 1445 163 94 18 chr1 181749628 181749905 -100443759 - AluJo SINE Alu -12 300 3 2464 89 0 0 chr1 181749916 181750219 -100443445 - AluSq SINE Alu -10 303 1 1945 200 82 15 chr1 181750224 181750699 -100442965 - L1MB8 LINE L1 -842 5304 4798 400 287 0 0 chr1 181750813 181750907 -100442757 - ERVL LTR ERVL -1480 4174 4081 1755 70 9 0 chr1 181750922 181751136 -100442528 + AluSq SINE Alu 86 301 -12 1583 295 32 13 chr1 181751203 181752251 -100441413 - ERVL LTR ERVL -1344 3893 2740 2445 95 0 0 chr1 181752276 181752572 -100441092 - AluSx SINE Alu -16 296 1 1040 228 16 0 chr1 181752572 181752761 -100440903 - MER58A DNA MER1_type -32 192 1 857 290 53 20 chr1 181752761 181753061 -100440603 - ERVL LTR ERVL -3188 2576 2267 346 253 56 45 chr1 181753068 181753241 -100440423 - ERVL LTR ERVL -2841 2203 1946 3807 211 77 26 chr1 181753294 181753657 -100440007 + MER21B LTR ERV1 1 344 -519 2285 132 0 12 chr1 181753657 181753997 -100439667 + MER1B DNA MER1_type 2 337 0 3807 211 77 26 chr1 181753997 181754057 -100439607 + MER21B LTR ERV1 344 399 -464 2160 120 0 19 chr1 181754057 181754366 -100439298 - AluSx SINE Alu -9 303 1 3807 211 77 26 chr1 181754366 181754762 -100438902 + MER21B LTR ERV1 399 863 0 261 292 28 0 chr1 181754986 181755058 -100438606 - ERVL LTR ERVL -4099 1555 1482 637 326 54 14 chr1 181755240 181755534 -100438130 - ERVL LTR ERVL -3567 1429 1124 339 215 58 74 chr1 181755995 181756116 -100437548 + MER5C DNA MER1_type 1 119 -205 257 149 0 0 chr1 181756276 181756323 -100437341 + MER5C DNA MER1_type 278 324 0 1430 93 0 0 chr1 181758125 181758307 -100435357 - AluSx SINE Alu -130 182 1 213 39 0 0 chr1 181761383 181761409 -100432255 + (CTG)n Simple_repeat Simple_repeat 1 26 0 2133 74 29 45 chr1 181762194 181762504 -100431160 - AluSx SINE Alu -7 305 1 409 307 22 11 chr1 181762560 181762739 -100430925 + L2 LINE L2 3108 3288 -25 248 280 0 0 chr1 181763458 181763508 -100430156 + MIR SINE MIR 28 77 -131 2045 144 7 0 chr1 181763706 181763997 -100429667 - AluSx SINE Alu -19 293 1 1139 47 0 0 chr1 181764333 181764461 -100429203 - AluY SINE Alu -183 128 1 2277 108 0 0 chr1 181764461 181764757 -100428907 - AluSq SINE Alu -17 296 1 466 106 0 0 chr1 181764767 181764833 -100428831 - AluSp/q SINE Alu -16 297 232 342 253 105 95 chr1 181764917 181765297 -100428367 + L1MC4a LINE L1 5787 6170 -1638 279 233 0 0 chr1 181765447 181765507 -100428157 + MIR SINE MIR 194 253 -9 1363 103 0 0 chr1 181765623 181765808 -100427856 - AluSg/x SINE Alu -6 303 119 2083 152 0 0 chr1 181766247 181766549 -100427115 - AluSx SINE Alu -10 302 1 483 266 128 16 chr1 181769272 181769487 -100424177 + MIR SINE MIR 20 262 0 2037 144 0 3 chr1 181770155 181770454 -100423210 - AluJb SINE Alu -14 298 1 922 132 0 22 chr1 181770815 181770951 -100422713 - FLAM_C SINE Alu -10 133 1 1882 225 94 17 chr1 181772403 181772933 -100420731 + MLT1F1 LTR MaLR 1 567 0 587 205 77 6 chr1 181772963 181773119 -100420545 + L2 LINE L2 2442 2608 -706 222 291 12 47 chr1 181773122 181773208 -100420456 + L2 LINE L2 3231 3313 0 2339 87 0 16 chr1 181774099 181774410 -100419254 + AluSc SINE Alu 1 306 -3 1890 126 30 0 chr1 181775598 181775867 -100417797 + AluSg SINE Alu 19 295 -15 1086 244 70 98 chr1 181775870 181776480 -100417184 + L1ME3A LINE L1 5578 6170 0 226 273 104 13 chr1 181777210 181777287 -100416377 + L2 LINE L2 3125 3208 -64 663 76 11 0 chr1 181782163 181782255 -100411409 + AluSg SINE Alu 5 97 -213 259 188 0 0 chr1 181782877 181782941 -100410723 - L1MB2 LINE L1 -30 6141 6078 3247 123 56 53 chr1 181782949 181783552 -100410112 - L1MA4 LINE L1 -283 6199 5595 245 51 77 0 chr1 181783600 181783639 -100410025 - L1P LINE L1 -737 5429 5388 * 13374 190 42 26 chr1 181783636 181784370 -100409294 - L1MA4 LINE L1 -1061 5267 4546 2044 143 0 0 chr1 181784370 181784656 -100409008 - AluSx SINE Alu -26 286 1 13374 190 42 26 chr1 181784656 181785529 -100408135 - L1MA4 LINE L1 -1782 4546 3689 2131 141 3 0 chr1 181785529 181785834 -100407830 - AluSx SINE Alu -6 306 1 13374 190 42 26 chr1 181785834 181787664 -100406000 - L1MA4 LINE L1 -2639 3689 1770 237 33 0 0 chr1 181787664 181787694 -100405970 + (T)n Simple_repeat Simple_repeat 1 30 0 3082 244 35 24 chr1 181788894 181789394 -100404270 - L1MA4 LINE L1 -4540 1788 1295 2258 112 3 0 chr1 181789394 181789689 -100403975 - AluSp SINE Alu -12 301 6 3082 244 35 24 chr1 181789689 181789772 -100403892 - L1MA4 LINE L1 -5033 1295 1214 2236 128 0 10 chr1 181789772 181790085 -100403579 - AluSg SINE Alu 0 310 1 3082 244 35 24 chr1 181790085 181790506 -100403158 - L1MA4 LINE L1 -5114 1214 772 2697 172 6 1 chr1 181790543 181791201 -100402463 - L1MA4 LINE L1 -4625 703 4 514 259 16 90 chr1 181791265 181791520 -100402144 - L2 LINE L2 0 3313 3078 1969 146 3 7 chr1 181791522 181791816 -100401848 - AluJb SINE Alu -19 293 1 2612 41 3 0 chr1 181792450 181792743 -100400921 + AluY SINE Alu 1 294 -17 762 235 141 42 chr1 181793263 181793649 -100400015 - L2 LINE L2 -172 3141 2644 2509 52 10 10 chr1 181794385 181794695 -100398969 - AluY SINE Alu -1 310 1 1967 119 10 19 chr1 181794697 181795007 -100398657 - AluSx SINE Alu -5 307 1 948 113 8 8 chr1 181795010 181795143 -100398521 - AluSq/x SINE Alu -179 133 1 2470 85 0 3 chr1 181796467 181796773 -100396891 + AluSq SINE Alu 1 305 -8 418 219 109 0 chr1 181797127 181797255 -100396409 + MLT1C LTR MaLR 97 238 -229 2035 149 3 7 chr1 181798861 181799163 -100394501 - AluSx SINE Alu -11 301 1 1990 90 72 14 chr1 181799393 181799672 -100393992 - AluY SINE Alu -15 296 2 867 316 91 53 chr1 181799750 181800396 -100393268 + L3 LINE CR1 905 1575 -2 180 261 0 0 chr1 181800415 181800461 -100393203 - MIR SINE MIR -71 137 92 185 239 43 0 chr1 181800497 181800543 -100393121 + L2 LINE L2 1369 1416 -1898 389 206 37 47 chr1 181801028 181801135 -100392529 + MER21B LTR ERV1 1 106 -757 * 438 151 27 14 chr1 181801133 181801206 -100392458 + MER21B LTR ERV1 19 92 -771 3730 206 49 13 chr1 181801206 181801998 -100391666 + MER21B LTR ERV1 43 863 0 199 390 98 12 chr1 181802153 181802317 -100391347 - L3b LINE CR1 -100 1483 1306 1091 120 39 103 chr1 181802400 181802634 -100391030 + MER20 DNA MER1_type 1 219 0 261 284 119 8 chr1 181802969 181803103 -100390561 + MIR SINE MIR 41 189 -73 22 56 0 0 chr1 181804278 181804314 -100389350 + AT_rich Low_complexity Low_complexity 1 36 0 339 275 38 30 chr1 181804421 181804552 -100389112 + MIR SINE MIR 20 151 -111 2271 120 0 0 chr1 181804636 181804944 -100388720 + AluSx SINE Alu 1 308 -4 334 337 82 0 chr1 181805330 181805514 -100388150 - MIR SINE MIR 0 262 64 836 212 153 52 chr1 181806331 181806473 -100387191 + MLT1H LTR MaLR 30 156 -253 1949 149 0 17 chr1 181806473 181806775 -100386889 + AluJo SINE Alu 1 297 -15 836 212 153 52 chr1 181806775 181807068 -100386596 + MLT1H LTR MaLR 156 405 -4 1186 208 33 113 chr1 181807287 181807660 -100386004 - L1MC4 LINE L1 -1 8041 7709 2201 108 6 3 chr1 181807660 181807974 -100385690 + L1PA15 LINE L1 5850 6164 -1 1186 208 33 113 chr1 181807974 181808053 -100385611 - L1MC4 LINE L1 -333 7709 7625 1393 178 95 4 chr1 181808056 181808320 -100385344 - AluJb SINE Alu -22 290 3 806 191 330 0 chr1 181808344 181808484 -100385180 - AluJo SINE Alu -4 308 215 189 0 0 0 chr1 181808484 181808505 -100385159 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 806 191 330 0 chr1 181808505 181808594 -100385070 - AluJo SINE Alu -97 215 3 248 246 31 0 chr1 181808598 181808663 -100385001 - L1MC4 LINE L1 -427 7615 7549 367 236 45 9 chr1 181808719 181808829 -100384835 - L1MC4 LINE L1 -507 7535 7422 320 202 51 45 chr1 181809606 181809784 -100383880 + (CATTA)n Simple_repeat Simple_repeat 2 180 0 293 250 152 0 chr1 181810370 181810462 -100383202 - L2 LINE L2 -51 3221 3116 1296 150 19 2 chr1 181810540 181810769 -100382895 + L1MA4 LINE L1 6053 6291 -14 1815 119 58 64 chr1 181810769 181811064 -100382600 - AluSx SINE Alu -19 293 1 1296 150 19 2 chr1 181811064 181811080 -100382584 + L1MA4 LINE L1 6291 6305 0 2108 175 71 19 chr1 181811229 181811692 -100381972 + Charlie1b DNA MER1_type 28 514 -9 2626 116 18 98 chr1 181812069 181812114 -100381550 + LTR46 LTR ERV1 1 48 -412 2034 106 32 0 chr1 181812114 181812398 -100381266 - AluSq SINE Alu -20 293 1 2626 116 18 98 chr1 181812398 181812852 -100380812 + LTR46 LTR ERV1 48 460 0 321 309 0 42 chr1 181813148 181813313 -100380351 + GA-rich Low_complexity Low_complexity 1 158 0 1663 127 103 4 chr1 181813875 181814172 -100379492 + AluSc SINE Alu 1 322 0 278 43 0 130 chr1 181814177 181814223 -100379441 - LTR46 LTR ERV1 -420 40 1 548 243 44 0 chr1 181814350 181814486 -100379178 + MIR SINE MIR 7 148 -114 1787 168 3 16 chr1 181814864 181815168 -100378496 - AluJb SINE Alu -12 300 1 302 258 0 11 chr1 181815396 181815485 -100378179 - L1ME4a LINE L1 -88 6033 5946 380 303 103 34 chr1 181815557 181816033 -100377631 - L1ME4a LINE L1 -1988 5820 5312 267 103 0 0 chr1 181816034 181816073 -100377591 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 1816 134 0 11 chr1 181816076 181816337 -100377327 - AluSx SINE Alu -54 258 1 535 282 51 48 chr1 181816643 181816955 -100376709 + L2 LINE L2 2998 3310 -3 2407 95 0 0 chr1 181817026 181817322 -100376342 - AluSg SINE Alu -14 296 1 309 281 123 51 chr1 181817442 181817815 -100375849 - L1ME4a LINE L1 -1495 4651 4252 1840 178 0 19 chr1 181817902 181818216 -100375448 - AluJb SINE Alu -4 308 1 2146 102 17 17 chr1 181818226 181818520 -100375144 - AluSq SINE Alu -19 294 1 2107 108 10 10 chr1 181818652 181818949 -100374715 - AluSq SINE Alu -16 297 1 26 30 0 0 chr1 181819135 181819168 -100374496 + AT_rich Low_complexity Low_complexity 1 33 0 2176 121 26 3 chr1 181819616 181819921 -100373743 - AluSx SINE Alu 0 312 1 703 247 11 17 chr1 181820119 181820297 -100373367 + MIR SINE MIR 8 184 -78 708 223 83 123 chr1 181820300 181820708 -100372956 - L2 LINE L2 -1 3312 2921 2275 102 0 3 chr1 181822334 181822627 -100371037 - AluSg SINE Alu -16 294 3 2058 100 53 17 chr1 181824007 181824306 -100369358 + AluY SINE Alu 1 310 -1 353 261 138 14 chr1 181824479 181824617 -100369047 - Charlie8 DNA MER1_type -2188 229 75 557 268 76 0 chr1 181824764 181824921 -100368743 + MIR3 SINE MIR 31 199 -9 208 272 87 33 chr1 181825853 181825945 -100367719 + L2 LINE L2 3134 3230 -42 452 260 59 29 chr1 181826041 181826245 -100367419 + MIR SINE MIR 2 211 -51 1895 142 43 0 chr1 181826312 181826593 -100367071 - AluJb SINE Alu -19 293 1 441 250 107 36 chr1 181827476 181827688 -100365976 + MIR SINE MIR 2 229 -33 213 269 19 0 chr1 181827864 181827916 -100365748 + GA-rich Low_complexity Low_complexity 1 53 0 302 300 10 0 chr1 181830287 181830387 -100363277 - MIR SINE MIR -115 147 47 258 232 80 43 chr1 181830761 181830899 -100362765 + L2 LINE L2 1938 2080 -1234 340 302 149 52 chr1 181831089 181831645 -100362019 + L2 LINE L2 2068 2677 -637 191 248 96 88 chr1 181832110 181832176 -100361488 + MIR SINE MIR 57 126 -136 2253 105 0 22 chr1 181832176 181832491 -100361173 - AluSq SINE Alu -5 308 1 191 248 96 88 chr1 181832491 181832549 -100361115 + MIR SINE MIR 126 182 -80 726 216 54 11 chr1 181832607 181832792 -100360872 + MIR SINE MIR 40 232 -30 204 243 0 0 chr1 181832849 181832886 -100360778 - L2 LINE L2 -30 3283 3247 276 170 75 0 chr1 181832889 181832942 -100360722 + L2 LINE L2 3211 3267 -5 273 167 33 0 chr1 181834134 181834194 -100359470 - L2 LINE L2 -2 3270 3209 338 306 39 67 chr1 181834900 181835080 -100358584 + MIR SINE MIR 20 194 -68 364 217 0 0 chr1 181835342 181835411 -100358253 + L2 LINE L2 3245 3313 0 858 73 0 0 chr1 181836044 181836154 -100357510 - HY1 scRNA scRNA 0 112 3 2006 132 7 7 chr1 181836189 181836477 -100357187 + AluJb SINE Alu 6 293 -19 1002 142 0 0 chr1 181837194 181837335 -100356329 + AluSx SINE Alu 1 141 -172 1121 100 0 120 chr1 181837435 181837635 -100356029 + AluSx SINE Alu 117 292 -18 2296 110 0 0 chr1 181837638 181837937 -100355727 + AluSx SINE Alu 1 299 -13 26 30 0 0 chr1 181838005 181838038 -100355626 + AT_rich Low_complexity Low_complexity 1 33 0 628 241 51 31 chr1 181839680 181839875 -100353789 + MER105 DNA DNA 2 200 -4 967 124 0 0 chr1 181839893 181840022 -100353642 + AluSq/x SINE Alu 1 129 -183 28 48 0 0 chr1 181840218 181840260 -100353404 + AT_rich Low_complexity Low_complexity 1 42 0 389 320 0 16 chr1 181840353 181840478 -100353186 + L2 LINE L2 3134 3256 -16 298 118 88 118 chr1 181840892 181840949 -100352715 + L1MC/D LINE L1 5383 5437 -922 2230 89 3 7 chr1 181840949 181841280 -100352384 + AluSx SINE Alu 1 312 0 298 118 88 118 chr1 181841280 181841324 -100352340 + L1MC/D LINE L1 5437 5481 -878 1332 137 51 27 chr1 181841331 181841587 -100352077 - L1MB8 LINE L1 -2 6176 5915 1257 171 16 86 chr1 181844036 181844351 -100349313 - AluJb SINE Alu -19 293 1 2018 148 17 0 chr1 181844385 181844675 -100348989 + AluJb SINE Alu 1 295 -17 766 188 94 61 chr1 181844826 181845039 -100348625 + AluJo SINE Alu 1 220 -92 262 128 21 0 chr1 181845039 181845086 -100348578 + FLAM SINE Alu 86 133 0 2250 106 10 0 chr1 181845573 181845876 -100347788 + AluSc SINE Alu 1 306 -3 513 272 55 20 chr1 181846420 181846622 -100347042 - MIR SINE MIR -3 259 51 22 35 0 0 chr1 181847034 181847063 -100346601 + AT_rich Low_complexity Low_complexity 1 29 0 207 286 13 13 chr1 181848726 181848803 -100344861 + (CCG)n Simple_repeat Simple_repeat 3 79 0 367 277 84 19 chr1 181849496 181849651 -100344013 + L2 LINE L2 2541 2705 -609 1233 128 12 68 chr1 181849662 181849913 -100343751 + AluSx SINE Alu 1 237 -75 21 36 0 0 chr1 181850848 181850876 -100342788 + AT_rich Low_complexity Low_complexity 1 28 0 2285 110 3 0 chr1 181850947 181851255 -100342409 - AluSx SINE Alu -3 309 1 189 0 0 0 chr1 181851997 181852018 -100341646 + (TG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr1 181852564 181852596 -100341068 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr1 181906067 181906093 -100287571 + (A)n Simple_repeat Simple_repeat 1 26 0 662 216 78 12 chr1 181906400 181906567 -100287097 + MER5B DNA MER1_type 1 178 0 2349 75 3 0 chr1 181906848 181907154 -100286510 + AluSp SINE Alu 1 307 -6 378 303 108 56 chr1 181907168 181907492 -100286172 + L2 LINE L2 2033 2373 -941 357 324 69 78 chr1 181907541 181907975 -100285689 + L2 LINE L2 2652 3079 -193 524 220 45 30 chr1 181908117 181908249 -100285415 - MIR3 SINE MIR -66 142 9 266 346 73 48 chr1 181908398 181908562 -100285102 - L2 LINE L2 -621 2693 2535 2116 98 17 0 chr1 181908562 181908859 -100284805 + AluSq SINE Alu 2 303 -10 266 346 73 48 chr1 181908859 181909090 -100284574 - L2 LINE L2 -779 2535 2288 1322 193 29 16 chr1 181909388 181909694 -100283970 - AluJb SINE Alu -2 310 1 1338 209 41 40 chr1 181909734 181909859 -100283805 + L1MC4a LINE L1 2153 2276 -3939 2036 119 0 0 chr1 181909859 181910144 -100283520 + AluSx SINE Alu 1 285 -27 252 0 0 0 chr1 181910144 181910172 -100283492 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1338 209 41 40 chr1 181910172 181910489 -100283175 + L1MC4a LINE L1 2276 2572 -3643 1026 124 0 7 chr1 181910489 181910634 -100283030 + U4 snRNA snRNA 1 144 -1 1338 209 41 40 chr1 181910634 181910674 -100282990 + L1MC4a LINE L1 2572 2610 -3605 1804 146 0 23 chr1 181910683 181910991 -100282673 + AluSx SINE Alu 12 312 0 811 140 96 7 chr1 181910991 181911127 -100282537 + AluJb SINE Alu 134 281 -31 180 0 0 0 chr1 181911130 181911150 -100282514 + (TC)n Simple_repeat Simple_repeat 1 20 0 423 119 0 0 chr1 181911150 181911217 -100282447 + (TG)n Simple_repeat Simple_repeat 2 68 0 1300 203 86 14 chr1 181911227 181911576 -100282088 + L1MC4a LINE L1 2550 2923 -3292 1139 152 19 5 chr1 181911576 181911786 -100281878 + L1MA4A LINE L1 5974 6186 -117 1570 186 27 83 chr1 181911799 181912207 -100281457 - MLT1C LTR MaLR -82 385 1 518 236 34 0 chr1 181912207 181912355 -100281309 + L1MC4a LINE L1 4409 4561 -1654 38214 85 24 9 chr1 181912368 181914282 -100279382 + L1PA6 LINE L1 11 1894 -4260 2381 71 0 0 chr1 181914282 181914578 -100279086 + AluY SINE Alu 1 296 -15 38214 85 24 9 chr1 181914578 181918691 -100274973 + L1PA6 LINE L1 1894 6125 -29 23 0 0 0 chr1 181918831 181918854 -100274810 + AT_rich Low_complexity Low_complexity 1 23 0 2824 206 50 55 chr1 181918854 181918957 -100274707 + L1MC4a LINE L1 4547 4649 -1566 2230 77 0 7 chr1 181918957 181919255 -100274409 + AluY SINE Alu 1 296 -15 2824 206 50 55 chr1 181919255 181919701 -100273963 + L1MC4a LINE L1 4649 5093 -1122 2494 46 0 3 chr1 181919701 181920005 -100273659 + AluY SINE Alu 1 303 -8 2824 206 50 55 chr1 181920005 181920290 -100273374 + L1MC4a LINE L1 5093 5378 -837 349 275 54 37 chr1 181920328 181920616 -100273048 + L1P LINE L1 4880 5169 -977 2125 114 0 0 chr1 181920791 181921090 -100272574 + AluSx SINE Alu 1 299 -13 469 266 65 30 chr1 181921133 181921302 -100272362 + L1MC/D LINE L1 5533 5707 -2101 1924 161 0 0 chr1 181921645 181921949 -100271715 + AluSx SINE Alu 1 304 -8 252 0 0 0 chr1 181922026 181922054 -100271610 + (A)n Simple_repeat Simple_repeat 1 28 0 798 161 0 0 chr1 181922070 181922194 -100271470 + FRAM SINE Alu 33 156 -20 36 53 0 0 chr1 181922235 181922292 -100271372 + AT_rich Low_complexity Low_complexity 1 57 0 558 265 123 54 chr1 181922440 181922649 -100271015 + L1MC4a LINE L1 5521 5765 -2112 2241 90 0 3 chr1 181922649 181922950 -100270714 + AluSx SINE Alu 1 300 -12 558 265 123 54 chr1 181922950 181923091 -100270573 + L1MC4a LINE L1 5765 5895 -1982 2088 115 0 0 chr1 181923094 181923411 -100270253 + AluSx SINE Alu 1 317 0 203 222 44 0 chr1 181923411 181923456 -100270208 - MIR SINE MIR -78 130 84 455 375 114 19 chr1 181923658 181924192 -100269472 - L2 LINE L2 -428 2886 2302 425 335 89 12 chr1 181924318 181924575 -100269089 + L2 LINE L2 2368 2644 -670 1967 116 7 7 chr1 181924621 181924924 -100268740 + AluSx SINE Alu 1 303 -9 1151 140 6 0 chr1 181924924 181925102 -100268562 + AluSg/x SINE Alu 134 312 0 727 258 224 21 chr1 181925397 181925727 -100267937 - LTR16A LTR ERVL -2 448 52 212 343 14 14 chr1 181925930 181926003 -100267661 + L2 LINE L2 3241 3313 0 318 328 25 8 chr1 181927168 181927287 -100266377 - MER91A DNA MER1_type -75 121 1 344 323 69 26 chr1 181927328 181927517 -100266147 - MIR SINE MIR -45 217 21 291 54 0 0 chr1 181927933 181927970 -100265694 + (TG)n Simple_repeat Simple_repeat 1 37 0 288 0 0 0 chr1 181927969 181928001 -100265663 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 230 308 13 0 chr1 181928406 181928484 -100265180 + C-rich Low_complexity Low_complexity 4 82 0 480 253 100 59 chr1 181928698 181928868 -100264796 + MIR3 SINE MIR 12 188 -20 193 236 111 0 chr1 181928974 181929046 -100264618 - L3b LINE CR1 -186 1397 1318 1830 160 3 0 chr1 181929065 181929371 -100264293 + AluSx SINE Alu 1 307 -5 1163 320 92 9 chr1 181929437 181929881 -100263783 - L3 LINE CR1 -14 1563 1083 413 287 0 0 chr1 181929949 181930043 -100263621 + MIR SINE MIR 47 140 -68 432 55 0 0 chr1 181931075 181931130 -100262534 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 4773 136 30 46 chr1 181932501 181932775 -100260889 + L1MB2 LINE L1 5045 5322 -849 855 177 25 0 chr1 181932775 181932933 -100260731 + L1PB4 LINE L1 5991 6152 -4 4773 136 30 46 chr1 181932933 181933782 -100259882 + L1MB2 LINE L1 5322 6170 -1 460 262 99 0 chr1 181936079 181936220 -100257444 + MIR SINE MIR 63 217 -45 186 43 0 0 chr1 181936862 181936885 -100256779 + (A)n Simple_repeat Simple_repeat 1 23 0 2361 75 7 0 chr1 181936988 181937283 -100256381 + AluSq SINE Alu 1 297 -16 316 167 64 39 chr1 181938365 181938443 -100255221 - LTR54 LTR ERV1 -29 481 402 244 244 217 9 chr1 181940204 181940319 -100253345 - MIR3 SINE MIR -3 205 67 579 145 57 40 chr1 181940621 181940745 -100252919 + MIR3 SINE MIR 52 177 -31 192 355 50 41 chr1 181942349 181942470 -100251194 + L2 LINE L2 3104 3225 -47 2531 61 0 6 chr1 181942491 181942804 -100250860 + AluY SINE Alu 1 311 0 1969 137 3 7 chr1 181944273 181944565 -100249099 + AluSq SINE Alu 1 291 -22 252 162 0 0 chr1 181945005 181945042 -100248622 - tRNA-Ile-ATT tRNA tRNA -39 38 2 246 242 16 0 chr1 181945499 181945561 -100248103 + GA-rich Low_complexity Low_complexity 3 65 0 181 324 56 28 chr1 181951170 181951278 -100242386 + MIR3 SINE MIR 5 115 -93 1044 154 0 0 chr1 181951629 181951798 -100241866 - AluJb SINE Alu -9 303 135 587 251 91 11 chr1 181955937 181956112 -100237552 + MIR SINE MIR 53 241 -21 209 264 0 0 chr1 181956229 181956282 -100237382 - L2 LINE L2 -32 3240 3188 2297 145 21 18 chr1 181956453 181956840 -100236824 - L1MB5 LINE L1 -6 6168 5781 212 330 38 38 chr1 181958161 181958267 -100235397 - MIR SINE MIR -69 139 34 1862 109 17 10 chr1 181958770 181959064 -100234600 - AluSq SINE Alu -17 296 1 192 200 120 0 chr1 181961287 181961337 -100232327 + L3 LINE CR1 1378 1433 -144 * 290 227 114 0 chr1 181961334 181961422 -100232242 + MIR3 SINE MIR 86 183 -25 203 243 0 0 chr1 181961473 181961510 -100232154 + polypurine Low_complexity Low_complexity 33 69 0 276 100 0 0 chr1 181962693 181962733 -100230931 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 40 0 0 chr1 181964470 181964495 -100229169 + (TG)n Simple_repeat Simple_repeat 1 25 0 536 285 23 47 chr1 181964597 181964811 -100228853 - MIR SINE MIR -6 256 48 1470 114 14 0 chr1 181965395 181965614 -100228050 + Tigger3(Golem) DNA MER2_type 2816 3037 0 1957 74 62 0 chr1 181965770 181966027 -100227637 - AluSg1 SINE Alu -16 293 21 325 242 93 37 chr1 181966045 181966206 -100227458 + L2 LINE L2 1933 2102 -1212 657 298 220 37 chr1 181966544 181967355 -100226309 + L2 LINE L2 2318 3270 -2 2354 68 0 29 chr1 181970450 181970761 -100222903 - AluSp SINE Alu -10 303 2 442 255 10 10 chr1 181970822 181970924 -100222740 - MER5A DNA MER1_type -84 105 4 281 163 0 0 chr1 181970949 181970998 -100222666 + MER5B DNA MER1_type 1 49 -129 260 260 0 48 chr1 181971406 181971510 -100222154 + CT-rich Low_complexity Low_complexity 4 102 0 805 175 137 9 chr1 181973847 181974058 -100219606 - MLT1E1 LTR MaLR 0 654 417 385 175 131 58 chr1 181974127 181974266 -100219398 - MLT1E2 LTR MaLR -417 209 77 2237 110 0 0 chr1 181975446 181975747 -100217917 - AluSx SINE Alu -11 301 1 276 221 52 0 chr1 181975768 181975878 -100217786 - L1ME3 LINE L1 -257 5905 5789 * 371 289 51 41 chr1 181975877 181976309 -100217355 - L1ME3 LINE L1 -647 5517 5077 21 0 0 0 chr1 181976947 181976968 -100216696 + AT_rich Low_complexity Low_complexity 1 21 0 403 243 223 7 chr1 181978036 181978184 -100215480 + MIR3 SINE MIR 23 202 -6 309 51 0 0 chr1 181980742 181980781 -100212883 + (TTA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr1 181981713 181981737 -100211927 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 181981820 181981843 -100211821 + AT_rich Low_complexity Low_complexity 1 23 0 285 301 0 0 chr1 181982778 181982861 -100210803 + L2 LINE L2 3229 3311 -2 202 211 0 0 chr1 181983713 181983765 -100209899 + T-rich Low_complexity Low_complexity 1 52 0 187 266 202 32 chr1 181984184 181984278 -100209386 - L2 LINE L2 -5 3308 3199 2380 109 0 0 chr1 181984527 181984840 -100208824 + AluSq SINE Alu 1 313 0 1512 154 107 4 chr1 181984962 181985242 -100208422 + L1MC1 LINE L1 6021 6329 -4 1524 129 21 33 chr1 181985242 181985483 -100208181 + AluSx SINE Alu 62 299 -13 1629 182 54 27 chr1 181986103 181986438 -100207226 + MER2 DNA MER2_type 1 344 0 736 148 9 9 chr1 181986822 181986937 -100206727 - MLT1C LTR MaLR 0 467 353 1036 221 40 26 chr1 181987685 181987957 -100205707 + AluJo SINE Alu 13 288 -24 713 224 6 22 chr1 181988647 181988826 -100204838 + MIR SINE MIR 87 262 0 585 241 37 6 chr1 181989281 181989443 -100204221 + MIR SINE MIR 95 261 -1 1304 167 41 0 chr1 181989450 181989696 -100203968 - L1MA8 LINE L1 -3 6288 6033 4227 179 23 31 chr1 181990962 181991002 -100202662 - L1P4 LINE L1 -656 5510 5471 1993 82 0 57 chr1 181991002 181991283 -100202381 - AluSg SINE Alu -45 265 1 4227 179 23 31 chr1 181991283 181992359 -100201305 - L1P4 LINE L1 -695 5471 4402 228 214 36 0 chr1 181992637 181992693 -100200971 - MER5A DNA MER1_type -85 104 47 1579 185 58 29 chr1 181992693 181992884 -100200780 - MLT1A2 LTR MaLR 0 374 167 366 42 0 0 chr1 181992884 181992932 -100200732 + (GA)n Simple_repeat Simple_repeat 2 49 0 1579 185 58 29 chr1 181992932 181993086 -100200578 - MLT1A2 LTR MaLR -207 167 19 866 137 157 0 chr1 181993546 181993699 -100199965 - THE1C LTR MaLR 0 375 199 1778 90 20 133 chr1 181993701 181994047 -100199617 - THE1C-int LTR MaLR -1273 307 1 2388 142 35 11 chr1 181994047 181994413 -100199251 - THE1C LTR MaLR 0 375 1 1752 117 11 83 chr1 181994527 181994899 -100198765 - MER4A LTR ERV1 0 664 261 688 101 0 10 chr1 181994899 181994998 -100198666 - MER4A LTR ERV1 -566 98 1 486 274 0 0 chr1 181995172 181995278 -100198386 - L2 LINE L2 0 3313 3208 2986 150 62 13 chr1 181995534 181996067 -100197597 + L1MA4 LINE L1 5498 6056 -244 220 211 0 0 chr1 181997405 181997443 -100196221 + MER5B DNA MER1_type 1 38 -140 353 118 0 0 chr1 181997453 181997504 -100196160 - Alu SINE Alu -257 51 1 2094 113 0 14 chr1 181997571 181997853 -100195811 + AluSx SINE Alu 1 278 -34 260 324 29 67 chr1 181997897 181998002 -100195662 + MIR SINE MIR 20 120 -142 192 179 0 0 chr1 181998049 181998088 -100195576 + GA-rich Low_complexity Low_complexity 2 40 0 2232 110 0 3 chr1 181998580 181998879 -100194785 + AluSg SINE Alu 1 298 -12 207 286 71 0 chr1 181999004 181999074 -100194590 + MIR SINE MIR 75 149 -113 1716 155 6 31 chr1 181999518 181999835 -100193829 - AluSx SINE Alu -2 310 2 327 168 24 12 chr1 181999940 182000023 -100193641 - AluS SINE Alu -237 66 1 665 282 75 36 chr1 182000132 182000165 -100193499 + MIR SINE MIR 1 31 -231 2282 106 0 0 chr1 182000165 182000458 -100193206 + AluSq SINE Alu 1 293 -20 665 282 75 36 chr1 182000458 182000676 -100192988 + MIR SINE MIR 31 262 0 198 0 0 0 chr1 182001681 182001703 -100191961 + (A)n Simple_repeat Simple_repeat 1 22 0 543 151 0 3 chr1 182003075 182003217 -100190447 - MER53 DNA DNA 0 189 1 530 297 114 13 chr1 182003360 182003596 -100190068 + MIR SINE MIR 2 261 -1 337 291 155 30 chr1 182003830 182004477 -100189187 + L1ME4a LINE L1 5292 6017 -104 2727 255 47 23 chr1 182004477 182005249 -100188415 + L1MEc LINE L1 36 825 -5571 415 304 85 30 chr1 182005880 182006081 -100187583 - L2 LINE L2 -4 3309 3098 253 318 76 64 chr1 182006160 182006647 -100187017 - L2 LINE L2 -457 2857 2365 1568 165 0 36 chr1 182006768 182007071 -100186593 + L1MA4 LINE L1 6009 6300 0 688 259 71 36 chr1 182007842 182007941 -100185723 + L2 LINE L2 2113 2207 -1107 816 264 88 8 chr1 182007941 182008180 -100185484 + MIR SINE MIR 1 258 -4 688 259 71 36 chr1 182008180 182008304 -100185360 + L2 LINE L2 2207 2344 -970 237 220 0 0 chr1 182008309 182008359 -100185305 + LTR40a LTR ERVL 164 213 -306 620 262 121 0 chr1 182008378 182008584 -100185080 - HERVL40 LTR ERVL -4376 1154 924 308 237 51 42 chr1 182008751 182008869 -100184795 - HERVL40 LTR ERVL -5411 119 1 1384 247 14 0 chr1 182008873 182009152 -100184512 - LTR40a LTR ERVL -3 516 234 1888 310 62 14 chr1 182009154 182009879 -100183785 - HERVL40 LTR ERVL -1658 3996 3237 204 97 0 0 chr1 182010641 182010672 -100182992 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 741 116 27 0 chr1 182010684 182010796 -100182868 - AluJo SINE Alu 0 312 198 833 161 7 47 chr1 182010800 182010949 -100182715 - AluJo SINE Alu -169 143 1 1915 125 53 0 chr1 182011505 182011786 -100181878 + AluJb SINE Alu 1 296 -16 5675 149 29 18 chr1 182013124 182013815 -100179849 - L1PB3 LINE L1 0 6154 5472 2447 100 0 0 chr1 182013815 182014126 -100179538 + AluSx SINE Alu 1 311 -1 5675 149 29 18 chr1 182014126 182014783 -100178881 - L1PB3 LINE L1 -682 5472 4779 375 193 0 57 chr1 182014845 182014933 -100178731 - MER99 DNA DNA -480 348 266 2027 147 96 0 chr1 182015078 182015412 -100178252 - MER47A DNA MER2_type 0 366 1 24 53 0 0 chr1 182016289 182016327 -100177337 + AT_rich Low_complexity Low_complexity 1 38 0 928 189 50 0 chr1 182016543 182016702 -100176962 - FRAM SINE Alu -15 161 1 780 142 0 8 chr1 182016727 182016847 -100176817 + AluSg/x SINE Alu 177 295 -17 309 107 0 54 chr1 182016847 182016903 -100176761 - FLAM_A SINE Alu -1 132 80 509 237 38 117 chr1 182018081 182018347 -100175317 - MIR SINE MIR -6 256 12 239 247 26 52 chr1 182018528 182018605 -100175059 + MER116 DNA Mariner 1 75 -5 270 176 0 0 chr1 182018645 182018696 -100174968 + (TA)n Simple_repeat Simple_repeat 2 52 0 2278 111 3 0 chr1 182018696 182018994 -100174670 - AluSx SINE Alu -13 299 1 400 274 19 13 chr1 182019200 182019357 -100174307 - L1ME3A LINE L1 -188 5982 5825 1382 124 0 5 chr1 182019373 182019566 -100174098 - L1PB3 LINE L1 -2 6152 5961 775 216 129 8 chr1 182019573 182019814 -100173850 - L1PB3 LINE L1 -1612 4534 4265 * 2394 126 11 16 chr1 182019812 182020185 -100173479 + L1PB3 LINE L1 5581 5951 -203 2245 110 23 0 chr1 182020203 182020504 -100173160 - AluSc SINE Alu -1 308 1 861 282 117 35 chr1 182020504 182020965 -100172699 - L1ME3A LINE L1 -339 5831 5333 297 0 0 0 chr1 182020986 182021019 -100172645 + (TG)n Simple_repeat Simple_repeat 2 34 0 932 252 120 18 chr1 182021023 182021416 -100172248 - L1ME3A LINE L1 -864 5282 4850 307 238 20 40 chr1 182022225 182022326 -100171338 + MIR SINE MIR 108 206 -56 292 264 14 0 chr1 182022563 182022635 -100171029 - MIR SINE MIR -62 146 75 2480 83 0 0 chr1 182022815 182023127 -100170537 - AluSx SINE Alu 0 312 1 2306 93 0 0 chr1 182023268 182023557 -100170107 - AluSx SINE Alu -23 289 1 375 333 54 5 chr1 182023977 182024181 -100169483 + L3 LINE CR1 1363 1576 -1 668 237 24 0 chr1 182024235 182024404 -100169260 + L1MB7 LINE L1 6012 6184 0 342 269 25 38 chr1 182024622 182024644 -100169020 - L1MA10 LINE L1 -3 6331 6310 995 184 161 30 chr1 182024644 182024911 -100168753 - L1ME1 LINE L1 -18 6148 5888 352 267 140 12 chr1 182025056 182025232 -100168432 - MIR3 SINE MIR -6 202 9 1092 288 25 19 chr1 182025681 182025847 -100167817 - L1MEc LINE L1 -4643 1753 1590 198 0 0 0 chr1 182025847 182025869 -100167795 + (TG)n Simple_repeat Simple_repeat 2 23 0 1092 288 25 19 chr1 182025869 182025928 -100167736 - L1MEc LINE L1 -4806 1590 1533 2194 118 0 0 chr1 182025928 182026232 -100167432 - AluSq SINE Alu -9 304 1 1092 288 25 19 chr1 182026232 182026478 -100167186 - L1MEc LINE L1 -4863 1533 1278 1271 295 38 20 chr1 182026509 182026737 -100166927 + LTR16B LTR ERVL 8 247 -217 1690 142 0 112 chr1 182026737 182027068 -100166596 - AluJb SINE Alu -8 294 1 1271 295 38 20 chr1 182027068 182027239 -100166425 + LTR16B LTR ERVL 247 414 -50 2122 109 3 10 chr1 182027330 182027634 -100166030 + AluSx SINE Alu 11 312 0 342 217 19 47 chr1 182028385 182028491 -100165173 - MLT1K LTR MaLR 0 588 486 323 264 82 86 chr1 182028605 182028825 -100164839 - MLT1K LTR MaLR -159 429 211 540 218 181 32 chr1 182030025 182030213 -100163451 - MIR SINE MIR -46 216 1 195 224 0 69 chr1 182030479 182030537 -100163127 - MIR SINE MIR -27 235 182 314 303 0 10 chr1 182031023 182031122 -100162542 + GA-rich Low_complexity Low_complexity 2 99 0 966 197 191 44 chr1 182031854 182032219 -100161445 + MER63 DNA MER1_type 7 1030 -31 202 74 0 0 chr1 182032375 182032402 -100161262 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 2122 112 0 3 chr1 182032402 182032687 -100160977 - AluSx SINE Alu -28 284 1 565 268 28 0 chr1 182034287 182034429 -100159235 + MIR SINE MIR 47 192 -70 5156 139 21 64 chr1 182034532 182035205 -100158459 - L1MA5A LINE L1 -32 6265 5565 1907 169 10 7 chr1 182035205 182035512 -100158152 - AluJo SINE Alu -2 310 3 5156 139 21 64 chr1 182035512 182035750 -100157914 - L1MA5A LINE L1 -732 5565 5318 1600 143 120 0 chr1 182035750 182036016 -100157648 + AluSc SINE Alu 2 299 0 5156 139 21 64 chr1 182036016 182036978 -100156686 - L1MA5A LINE L1 -979 5318 4329 1830 173 3 7 chr1 182036978 182037279 -100156385 - AluJb SINE Alu -11 301 2 5156 139 21 64 chr1 182037279 182037475 -100156189 - L1MA5A LINE L1 -1968 4329 4126 263 298 221 0 chr1 182037512 182037670 -100155994 + L2 LINE L2 2040 2232 -1082 966 167 14 127 chr1 182037682 182037958 -100155706 - L1MDa LINE L1 -6262 278 34 1966 139 24 3 chr1 182037999 182038338 -100155326 - L1MB2 LINE L1 -3 6168 5823 25 0 0 0 chr1 182038444 182038469 -100155195 + AT_rich Low_complexity Low_complexity 1 25 0 664 306 83 56 chr1 182038558 182039039 -100154625 - L1MEd LINE L1 -5390 729 236 821 245 64 12 chr1 182039086 182039350 -100154314 + MLT1F1 LTR MaLR 5 301 -266 * 1826 220 56 16 chr1 182039348 182039482 -100154182 + LTR32 LTR ERVL 13 140 -331 532 88 0 12 chr1 182039482 182039562 -100154102 + MADE1 DNA Mariner 1 79 -1 1826 220 56 16 chr1 182039562 182039859 -100153805 + LTR32 LTR ERVL 140 461 -10 1163 196 76 8 chr1 182039869 182040119 -100153545 + MLT1F1 LTR MaLR 297 563 -4 211 272 19 58 chr1 182040243 182040346 -100153318 + L2 LINE L2 798 896 -2418 600 285 26 48 chr1 182040678 182040948 -100152716 + MLT1K LTR MaLR 324 587 -1 653 279 29 25 chr1 182040968 182041244 -100152420 - MLT1J LTR MaLR -4 507 231 360 202 21 0 chr1 182041239 182041336 -100152328 - MLT1J LTR MaLR -331 180 99 * 195 303 92 0 chr1 182041882 182041958 -100151706 + L2 LINE L2 3223 3305 -8 398 325 126 55 chr1 182041970 182042607 -100151057 + L2 LINE L2 1578 2259 -1055 6975 248 120 23 chr1 182042617 182044323 -100149341 - L2 LINE L2 -293 3020 1040 378 0 0 0 chr1 182044323 182044365 -100149299 + (TTA)n Simple_repeat Simple_repeat 1 42 0 6975 248 120 23 chr1 182044365 182044933 -100148731 - L2 LINE L2 -2273 1040 528 471 306 135 39 chr1 182044934 182045402 -100148262 + L2 LINE L2 1876 2388 -926 569 310 117 57 chr1 182045761 182046237 -100147427 + L1MEd LINE L1 915 1515 -975 4394 124 53 22 chr1 182046311 182047090 -100146574 - HSMAR2 DNA Mariner -6 1296 494 10965 89 22 2 chr1 182047091 182048955 -100144709 + L1PA7 LINE L1 3826 5719 -435 189 0 0 0 chr1 182048955 182048976 -100144688 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 10965 89 22 2 chr1 182048976 182049417 -100144247 + L1PA7 LINE L1 5719 6150 -4 554 256 49 4 chr1 182049434 182049680 -100143984 - L1M4 LINE L1 -1712 4434 4178 240 337 41 0 chr1 182050259 182050357 -100143307 + MIR SINE MIR 41 142 -66 487 315 67 6 chr1 182050719 182050897 -100142767 - MIR SINE MIR -10 252 64 642 248 89 45 chr1 182051029 182051275 -100142389 - L2 LINE L2 -12 3301 3045 183 293 131 30 chr1 182051285 182051483 -100142181 - L2 LINE L2 -914 2400 2183 344 275 71 31 chr1 182051681 182051809 -100141855 - MIR SINE MIR -35 173 54 311 254 28 0 chr1 182051874 182051945 -100141719 - MIR SINE MIR -187 75 3 477 296 28 30 chr1 182052048 182052266 -100141398 - L2 LINE L2 -195 3077 2861 452 215 274 15 chr1 182052541 182052676 -100140988 - MER5A DNA MER1_type -6 183 14 4593 139 57 14 chr1 182053129 182054139 -100139525 - L1MB5 LINE L1 0 6672 5619 5463 79 15 23 chr1 182054139 182054963 -100138701 - L1PA10 LINE L1 0 6168 5352 23586 163 26 18 chr1 182055053 182061366 -100132298 - L1PA10 LINE L1 0 6483 10 10158 240 35 21 chr1 182061378 182063419 -100130245 - L1MB5 LINE L1 -1014 5630 3618 7327 65 6 0 chr1 182063419 182065152 -100128512 - L1PA6 LINE L1 -2 6152 4414 10158 240 35 21 chr1 182065152 182067381 -100126283 - L1MB5 LINE L1 -3026 3618 1420 1822 155 3 7 chr1 182067381 182067671 -100125993 + AluJb SINE Alu 1 289 -23 10158 240 35 21 chr1 182067671 182068030 -100125634 - L1MB5 LINE L1 -5224 1420 1067 201 74 0 0 chr1 182068030 182068057 -100125607 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 10158 240 35 21 chr1 182068057 182068672 -100124992 - L1MB5 LINE L1 -5577 1067 185 1298 214 32 29 chr1 182068689 182069035 -100124629 - L1MA9 LINE L1 -37 6275 5929 1332 130 94 18 chr1 182069035 182069258 -100124406 - AluSg/x SINE Alu 0 312 73 387 237 0 107 chr1 182069277 182069454 -100124210 - L1MB5 LINE L1 -6383 159 2 5425 99 12 41 chr1 182069897 182070904 -100122760 + L1P LINE L1 3440 4417 -1729 5745 128 30 7 chr1 182071025 182072075 -100121589 + L1P LINE L1 2035 3108 -3038 5845 36 2 1 chr1 182072228 182073291 -100120373 + L1PA2 LINE L1 4950 6014 -141 340 269 123 48 chr1 182074519 182074746 -100118918 - L1ME4a LINE L1 0 6121 5878 375 111 67 78 chr1 182076101 182076191 -100117473 + L1MB2 LINE L1 6076 6164 -7 1345 249 44 71 chr1 182077180 182077685 -100115979 + L1M2b LINE L1 3 493 -6716 3629 188 55 22 chr1 182080609 182081520 -100112144 - L1 LINE L1 -1716 4430 3490 361 333 8 8 chr1 182081581 182081710 -100111954 + CT-rich Low_complexity Low_complexity 1 129 0 272 276 9 9 chr1 182081867 182081983 -100111681 - L1 LINE L1 -1766 4380 4265 * 2209 126 11 16 chr1 182081981 182082354 -100111310 + L1PB3 LINE L1 5581 5951 -203 2302 103 23 0 chr1 182082372 182082673 -100110991 - AluSc SINE Alu -1 308 1 229 311 53 45 chr1 182083541 182083673 -100109991 - MER5A DNA MER1_type -13 176 44 * 311 235 37 88 chr1 182083578 182083714 -100109950 + MER5A DNA MER1_type 61 189 0 531 237 38 117 chr1 182085396 182085662 -100108002 - MIR SINE MIR -6 256 12 273 182 0 0 chr1 182085960 182086015 -100107649 + (TA)n Simple_repeat Simple_repeat 1 55 0 2156 108 14 3 chr1 182086015 182086310 -100107354 - AluSq SINE Alu -15 298 1 545 262 79 30 chr1 182086422 182086586 -100107078 - MER5B DNA MER1_type -6 172 1 250 239 29 86 chr1 182086691 182086934 -100106730 - Tigger2 DNA MER2_type -20 2698 2470 946 189 50 0 chr1 182087644 182087803 -100105861 - AluJo SINE Alu -15 297 131 731 124 0 0 chr1 182087842 182087947 -100105717 + AluSg/x SINE Alu 190 294 -18 285 107 0 54 chr1 182087947 182088003 -100105661 - AluJo SINE Alu -169 133 81 182 221 26 65 chr1 182088584 182088661 -100105003 + MER5C DNA MER1_type 209 282 -42 364 258 27 124 chr1 182089272 182089497 -100104167 - MIR SINE MIR -6 256 54 405 276 54 27 chr1 182089629 182090026 -100103638 - L1MCa LINE L1 -3729 2486 2080 7394 34 14 0 chr1 182090040 182091632 -100102032 - L1PA4 LINE L1 -5 6150 4548 369 317 51 64 chr1 182091632 182091860 -100101804 - L1MCa LINE L1 -4417 1979 1756 2283 110 0 3 chr1 182091860 182092170 -100101494 - AluY SINE Alu 0 311 3 369 317 51 64 chr1 182092170 182092316 -100101348 - L1MCa LINE L1 -4640 1756 1610 41665 42 2 0 chr1 182092622 182098634 -100095030 - L1PA3 LINE L1 -132 6023 2 434 319 12 6 chr1 182099562 182099728 -100093936 - MER102a DNA MER1_type -1 329 163 202 352 0 19 chr1 182099732 182099837 -100093827 - L2 LINE L2 -336 2936 2834 878 287 58 47 chr1 182100297 182100364 -100093300 - L2 LINE L2 -896 2418 2353 2224 103 7 0 chr1 182100364 182100655 -100093009 - AluSx SINE Alu -19 293 1 878 287 58 47 chr1 182100655 182101016 -100092648 - L2 LINE L2 -961 2353 1985 360 0 0 0 chr1 182101393 182101433 -100092231 + (TA)n Simple_repeat Simple_repeat 1 40 0 315 0 0 0 chr1 182101434 182101469 -100092195 + (T)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr1 182101863 182101895 -100091769 + AT_rich Low_complexity Low_complexity 1 32 0 303 292 21 10 chr1 182101921 182102017 -100091647 - MIR SINE MIR 0 262 166 799 320 134 13 chr1 182102022 182102239 -100091425 - L2 LINE L2 0 3313 3124 2163 127 3 7 chr1 182102239 182102546 -100091118 - AluSx SINE Alu -6 306 1 799 320 134 13 chr1 182102546 182103121 -100090543 - L2 LINE L2 -189 3124 2429 217 412 46 13 chr1 182103127 182103220 -100090444 - MIR SINE MIR -104 158 57 1354 136 12 41 chr1 182103220 182103463 -100090201 + MER46A DNA MER2_type 1 236 0 217 412 46 13 chr1 182103463 182103522 -100090142 - MIR SINE MIR -205 57 1 2010 154 0 3 chr1 182105004 182105315 -100088349 + AluJb SINE Alu 3 312 0 373 297 31 31 chr1 182106768 182106896 -100086768 - MIR SINE MIR -64 144 17 201 344 50 44 chr1 182107019 182107179 -100086485 + MIR3 SINE MIR 10 170 -38 182 340 214 0 chr1 182108787 182108890 -100084774 + MIR3 SINE MIR 3 127 -81 467 287 108 6 chr1 182109566 182109733 -100083931 + MIR SINE MIR 49 232 -30 2358 255 51 31 chr1 182109830 182110829 -100082835 + L2 LINE L2 2301 3313 0 248 242 33 66 chr1 182110841 182110877 -100082787 - MER117 DNA MER1_type -106 91 55 1842 133 72 36 chr1 182110877 182111239 -100082425 - THE1C LTR MaLR 0 375 1 248 242 33 66 chr1 182111239 182111293 -100082371 - MER117 DNA MER1_type -142 55 4 1288 226 50 45 chr1 182111655 182112120 -100081544 + MLT1C LTR MaLR 1 467 0 194 258 125 58 chr1 182112459 182112579 -100081085 - L3 LINE CR1 -115 1462 1335 343 236 158 24 chr1 182112836 182112963 -100080701 + MIR SINE MIR 67 210 -52 228 200 55 18 chr1 182113052 182113107 -100080557 + MIR SINE MIR 30 86 -122 712 263 16 41 chr1 182114084 182114278 -100079386 - MIR SINE MIR -51 211 23 223 246 0 72 chr1 182114585 182114654 -100079010 + L2 LINE L2 3209 3272 0 3819 117 67 30 chr1 182114709 182115383 -100078281 - L1PA16 LINE L1 -9 6157 5459 228 0 0 0 chr1 182115490 182115520 -100078144 + L1P4 LINE L1 5460 5489 -676 2582 92 5 27 chr1 182115524 182115894 -100077770 - THE1B LTR MaLR -2 362 1 4080 160 16 11 chr1 182115903 182116903 -100076761 - L1P4 LINE L1 -664 5502 4501 194 156 44 0 chr1 182117058 182117103 -100076561 + L2 LINE L2 1652 1698 -1616 1065 212 57 29 chr1 182117122 182117438 -100076226 + L1ME3A LINE L1 5845 6169 -1 1310 250 116 44 chr1 182117450 182117967 -100075697 + L2 LINE L2 2765 3312 -1 269 189 54 27 chr1 182118173 182118247 -100075417 + L1M4 LINE L1 709 784 -5758 195 129 0 0 chr1 182118275 182118306 -100075358 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 312 344 61 8 chr1 182118868 182118999 -100074665 + L2 LINE L2 2891 3028 -244 196 269 58 0 chr1 182119897 182119949 -100073715 - L2 LINE L2 -830 2484 2430 478 130 0 0 chr1 182120573 182120650 -100073014 + MADE1 DNA Mariner 4 80 0 387 237 0 107 chr1 182120826 182121003 -100072661 + L1MB5 LINE L1 2 159 -6383 1332 130 94 18 chr1 182121022 182121245 -100072419 + AluSg/x SINE Alu 71 310 0 1298 214 32 29 chr1 182121245 182121591 -100072073 + L1MA9 LINE L1 5929 6275 -37 10177 227 51 16 chr1 182121608 182122229 -100071435 + L1MB5 LINE L1 185 783 -5861 201 74 0 0 chr1 182122229 182122256 -100071408 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 10177 227 51 16 chr1 182122256 182122615 -100071049 + L1MB5 LINE L1 783 1128 -5516 1822 155 3 7 chr1 182122615 182122905 -100070759 - AluJb SINE Alu -23 289 1 10177 227 51 16 chr1 182122905 182125135 -100068529 + L1MB5 LINE L1 1128 3278 -3366 7327 65 7 0 chr1 182125135 182126868 -100066796 + L1PA6 LINE L1 4414 6152 -2 10177 227 51 16 chr1 182126868 182128909 -100064755 + L1MB5 LINE L1 3278 5630 -1014 17124 154 22 15 chr1 182128921 182135233 -100058431 + L1PA10 LINE L1 10 6483 0 5858 79 14 24 chr1 182135323 182136148 -100057516 + L1PA10 LINE L1 5352 6168 0 5023 137 57 14 chr1 182136148 182137158 -100056506 + L1MB5 LINE L1 5619 6672 0 449 215 274 15 chr1 182137611 182137746 -100055918 + MER5A DNA MER1_type 14 183 -6 466 296 28 30 chr1 182138021 182138239 -100055425 + L2 LINE L2 2861 3077 -195 313 254 28 0 chr1 182138342 182138413 -100055251 + MIR SINE MIR 3 75 -187 339 275 71 31 chr1 182138478 182138606 -100055058 + MIR SINE MIR 54 186 -35 180 288 136 35 chr1 182138804 182139002 -100054662 + L2 LINE L2 2183 2400 -914 618 228 102 57 chr1 182139012 182139258 -100054406 + L2 LINE L2 3045 3301 -12 471 315 67 6 chr1 182139390 182139568 -100054096 + MIR SINE MIR 64 252 -10 222 274 16 0 chr1 182139935 182140020 -100053644 - MIR SINE MIR -73 135 50 659 256 49 4 chr1 182140607 182140853 -100052811 + L1M4 LINE L1 4178 4434 -1712 32184 105 19 23 chr1 182140870 182143232 -100050432 - L1PA7 LINE L1 -4 6465 4094 2339 100 0 3 chr1 182143232 182143533 -100050131 - AluY SINE Alu -11 300 1 32184 105 19 23 chr1 182143533 182147553 -100046111 - L1PA7 LINE L1 -2375 4094 8 7239 200 55 48 chr1 182147642 182148590 -100045074 - L1MB4 LINE L1 -2 6676 5736 402 21 0 0 chr1 182148590 182148637 -100045027 + (TC)n Simple_repeat Simple_repeat 2 48 0 7239 200 55 48 chr1 182148637 182148655 -100045009 - L1MB4 LINE L1 -942 5736 5720 6151 64 4 305 chr1 182148655 182150522 -100043142 + SVA Other Other 80 1384 -2 7239 200 55 48 chr1 182150522 182150626 -100043038 - L1MB4 LINE L1 -958 5720 5618 2204 105 3 0 chr1 182150626 182150911 -100042753 - AluSp SINE Alu -15 298 13 7239 200 55 48 chr1 182150911 182152430 -100041234 - L1MB4 LINE L1 -1060 5618 4053 1786 211 24 22 chr1 182152430 182152799 -100040865 + MLT1A2 LTR MaLR 1 370 -4 7239 200 55 48 chr1 182152799 182153258 -100040406 - L1MB4 LINE L1 -2625 4053 3599 349 259 57 111 chr1 182153418 182153680 -100039984 - L1MB4 LINE L1 -6293 249 2 324 256 37 0 chr1 182153773 182153855 -100039809 + L1MC4 LINE L1 6772 6856 -1186 301 273 39 84 chr1 182154060 182154214 -100039450 + LTR33A LTR ERVL 1 147 -376 346 318 84 7 chr1 182154511 182154665 -100038999 + LTR33A LTR ERVL 358 523 0 495 300 39 50 chr1 182154667 182154949 -100038715 - L1M4 LINE L1 -2168 3978 3701 1867 194 21 6 chr1 182154949 182155285 -100038379 - MER58B DNA MER1_type 0 341 1 495 300 39 50 chr1 182155285 182155462 -100038202 - L1M4 LINE L1 -2445 3701 3524 189 107 0 0 chr1 182155543 182155571 -100038093 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2022 113 36 39 chr1 182155579 182155888 -100037776 - AluSx SINE Alu -2 310 3 374 314 107 13 chr1 182156002 182156161 -100037503 - L2 LINE L2 -602 2712 2539 3000 178 35 22 chr1 182156175 182156726 -100036938 - MER68 LTR ERV1 0 562 5 308 274 82 41 chr1 182156744 182156890 -100036774 + HsTC2 DNA Tc2 375 526 -1372 333 308 19 120 chr1 182156943 182157251 -100036413 - L2 LINE L2 -46 3226 2950 270 307 59 20 chr1 182157833 182157934 -100035730 - L2 LINE L2 -4 3268 3164 563 228 66 112 chr1 182159293 182159552 -100034112 + MIR SINE MIR 13 259 -3 303 309 43 43 chr1 182159567 182159706 -100033958 - L2 LINE L2 -899 2415 2277 22 0 0 0 chr1 182160371 182160393 -100033271 + AT_rich Low_complexity Low_complexity 1 22 0 236 298 0 0 chr1 182160437 182160494 -100033170 - L2 LINE L2 -4 3309 3253 284 0 0 27 chr1 182160802 182160839 -100032825 + (TTA)n Simple_repeat Simple_repeat 2 37 0 854 253 77 4 chr1 182161093 182161326 -100032338 - MIR SINE MIR -10 252 3 2247 94 17 7 chr1 182161353 182161652 -100032012 - AluSg SINE Alu -8 302 1 2119 123 0 7 chr1 182162833 182163134 -100030530 - AluSx SINE Alu -9 303 5 2247 98 7 7 chr1 182163198 182163494 -100030170 - AluSx SINE Alu -16 296 1 199 284 40 27 chr1 182163655 182163729 -100029935 - L2 LINE L2 -220 3052 2978 568 319 13 6 chr1 182164813 182164970 -100028694 + MER91A DNA MER1_type 27 184 -12 297 304 13 0 chr1 182166186 182166265 -100027399 + CT-rich Low_complexity Low_complexity 5 84 0 543 312 98 12 chr1 182166658 182166831 -100026833 + MER91A DNA MER1_type 7 194 -2 238 264 42 0 chr1 182168291 182168363 -100025301 - MIR3 SINE MIR -39 169 95 1849 162 0 17 chr1 182168750 182169052 -100024612 - AluJb SINE Alu -15 297 1 359 303 90 0 chr1 182169054 182169176 -100024488 - L2 LINE L2 -1 3312 3180 518 332 70 29 chr1 182169611 182169855 -100023809 - MIR SINE MIR -1 261 8 334 303 79 7 chr1 182170220 182170372 -100023292 - MIR3 SINE MIR -13 195 33 3694 172 96 63 chr1 182171376 182172276 -100021388 - MER63C DNA MER1_type 0 930 2 2397 57 13 23 chr1 182172289 182172590 -100021074 - AluY SINE Alu -13 298 1 445 297 24 30 chr1 182173476 182173641 -100020023 + MIR SINE MIR 29 192 -70 230 182 23 0 chr1 182173661 182173705 -100019959 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 527 253 133 6 chr1 182174258 182174424 -100019240 - MIR SINE MIR -2 260 74 581 219 41 16 chr1 182174556 182174679 -100018985 - L2 LINE L2 0 3313 3188 630 178 71 6 chr1 182174807 182174976 -100018688 - MER33 DNA MER1_type -1 362 183 18377 193 17 24 chr1 182174976 182178225 -100015439 + L1PA12 LINE L1 907 4956 -2628 261 0 0 0 chr1 182178225 182178254 -100015410 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 18377 193 17 24 chr1 182178254 182179176 -100014488 + L1PA12 LINE L1 4956 5883 -1701 6811 83 13 26 chr1 182179176 182180973 -100012691 + L1PA11 LINE L1 4382 6173 -1 863 175 26 0 chr1 182180974 182181128 -100012536 - MER33 DNA MER1_type -166 158 1 466 281 85 18 chr1 182181143 182181307 -100012357 - MER5A DNA MER1_type -6 183 9 4022 204 79 5 chr1 182181406 182182294 -100011370 + L1MD2 LINE L1 5402 6355 -4 423 344 13 6 chr1 182182294 182182451 -100011213 - MIR SINE MIR -52 210 53 242 315 134 27 chr1 182183208 182183357 -100010307 - MIR3 SINE MIR -6 202 38 392 242 44 0 chr1 182183499 182183590 -100010074 + L2 LINE L2 3215 3309 -4 305 272 22 111 chr1 182183755 182183935 -100009729 - L2 LINE L2 -15 3298 3135 407 308 100 0 chr1 182184731 182184851 -100008813 - L2 LINE L2 -14 3258 3127 802 215 18 0 chr1 182185078 182185241 -100008423 + MER45A DNA AcHobo 13 178 0 367 273 111 69 chr1 182185749 182185818 -100007846 + MIR SINE MIR 35 100 -162 1991 124 0 21 chr1 182185818 182186108 -100007556 - AluSx SINE Alu -7 305 22 367 273 111 69 chr1 182186108 182186254 -100007410 + MIR SINE MIR 100 259 -3 354 98 0 0 chr1 182186726 182186777 -100006887 + (CA)n Simple_repeat Simple_repeat 2 52 0 213 441 56 0 chr1 182186882 182187025 -100006639 - L2 LINE L2 -218 3054 2904 1395 244 30 75 chr1 182187572 182187789 -100005875 + MLT1J LTR MaLR 1 226 -285 1826 165 0 7 chr1 182187789 182188080 -100005584 + AluJb SINE Alu 3 291 -21 1395 244 30 75 chr1 182188080 182188370 -100005294 + MLT1J LTR MaLR 226 485 -26 276 326 160 43 chr1 182188424 182188869 -100004795 - L2 LINE L2 -1134 2180 1684 226 297 31 0 chr1 182189359 182189423 -100004241 + MIR SINE MIR 118 183 -79 436 237 228 14 chr1 182189551 182189764 -100003900 + MIR SINE MIR 3 262 0 755 290 106 45 chr1 182190619 182191094 -100002570 + L2 LINE L2 2803 3312 -1 1284 183 4 30 chr1 182191095 182191330 -100002334 + AluJb SINE Alu 84 312 0 226 355 49 33 chr1 182191578 182191761 -100001903 + MIR SINE MIR 6 191 -71 849 202 12 119 chr1 182191864 182192117 -100001547 + MIR SINE MIR 33 258 -4 279 0 0 0 chr1 182192702 182192733 -100000931 + (CA)n Simple_repeat Simple_repeat 2 32 0 538 335 124 4 chr1 182193849 182194082 -99999582 + MIR SINE MIR 2 262 0 453 276 75 17 chr1 182194909 182195083 -99998581 - MIR SINE MIR -5 257 74 555 303 14 95 chr1 182196833 182197127 -99996537 - L2 LINE L2 -4 3268 2999 350 222 6 42 chr1 182197234 182197401 -99996263 + (TATAA)n Simple_repeat Simple_repeat 5 165 0 325 263 86 43 chr1 182197495 182197653 -99996011 - MIR3 SINE MIR -15 193 20 8698 141 8 6 chr1 182198013 182199443 -99994221 - Tigger2 DNA MER2_type -1 2717 1285 226 235 0 0 chr1 182199473 182199524 -99994140 - Tigger2 DNA MER2_type -2187 531 481 11034 88 7 5 chr1 182199580 182200022 -99993642 - L1PA7 LINE L1 -3 6151 5711 189 0 0 0 chr1 182200022 182200043 -99993621 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 11034 88 7 5 chr1 182200043 182201906 -99991758 - L1PA7 LINE L1 -443 5711 3826 4415 123 53 22 chr1 182201907 182202686 -99990978 + HSMAR2 DNA Mariner 494 1296 -6 569 310 117 57 chr1 182202760 182203236 -99990428 - L1MEd LINE L1 -975 1515 915 615 132 0 0 chr1 182203653 182203759 -99989905 + L1MA5A LINE L1 6189 6294 -3 2188 95 30 3 chr1 182203930 182204226 -99989438 - AluSq SINE Alu -9 304 1 2298 106 0 0 chr1 182204340 182204643 -99989021 - AluSx SINE Alu -8 304 2 183 146 0 0 chr1 182204672 182204713 -99988951 + (A)n Simple_repeat Simple_repeat 1 41 0 597 305 41 0 chr1 182204824 182205021 -99988643 + MIR SINE MIR 56 260 -2 229 236 14 42 chr1 182205194 182205266 -99988398 + L3 LINE CR1 1174 1243 -334 1982 128 4 0 chr1 182205532 182205805 -99987859 - AluSx SINE Alu -38 274 1 378 91 0 0 chr1 182206189 182206244 -99987420 + (CA)n Simple_repeat Simple_repeat 2 56 0 515 313 63 30 chr1 182206692 182207027 -99986637 + L2 LINE L2 1609 1954 -1360 2186 111 7 0 chr1 182207037 182207334 -99986330 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 182207437 182207459 -99986205 + AT_rich Low_complexity Low_complexity 1 22 0 32 101 0 0 chr1 182207496 182207605 -99986059 + AT_rich Low_complexity Low_complexity 1 109 0 603 194 8 0 chr1 182208019 182208133 -99985531 + MER114 LTR ERV 17 131 -517 1214 179 28 0 chr1 182208133 182208351 -99985313 - MLT1A1 LTR MaLR 0 365 142 4883 159 25 26 chr1 182208370 182208556 -99985108 - L1MA7 LINE L1 0 6291 6106 252 0 0 0 chr1 182208556 182208584 -99985080 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1582 91 0 0 chr1 182208584 182208782 -99984882 - AluY SINE Alu -27 284 87 4883 159 25 26 chr1 182208782 182210518 -99983146 - L1MA7 LINE L1 -183 6108 4368 * 8721 111 11 0 chr1 182210513 182211895 -99981769 - L1PA7 LINE L1 -2175 3971 2575 * 9503 88 4 1 chr1 182211886 182213276 -99980388 + L1PA7 LINE L1 3957 5350 -796 912 93 0 0 chr1 182213270 182213409 -99980255 - L1P LINE L1 -3372 2774 2636 * 6227 67 1 0 chr1 182213411 182214207 -99979457 + L1PA7 LINE L1 5350 6146 -8 1596 208 81 19 chr1 182214487 182214858 -99978806 + MSTD LTR MaLR 1 394 -2 324 340 95 23 chr1 182215246 182215508 -99978156 + L1ME LINE L1 530 810 -5260 1953 186 0 0 chr1 182215573 182215953 -99977711 + AluJb SINE Alu 1 380 0 465 259 7 0 chr1 182215961 182216096 -99977568 + LTR51 LTR ERV1 536 671 0 1072 141 56 86 chr1 182216120 182216389 -99977275 - LTR49 LTR ERV1 -334 261 1 324 315 117 25 chr1 182216406 182216568 -99977096 + L3 LINE CR1 1235 1411 -166 280 329 0 0 chr1 182216845 182216924 -99976740 + MIR SINE MIR 184 262 0 6579 107 29 13 chr1 182217170 182218211 -99975453 + MER11C LTR ERVK 1 1057 -14 192 77 0 0 chr1 182218383 182218409 -99975255 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 17027 155 49 19 chr1 182218423 182219800 -99973864 - L1PBa LINE L1 -1314 5548 4214 2282 106 0 0 chr1 182219800 182220103 -99973561 - AluY SINE Alu -8 303 1 17027 155 49 19 chr1 182220103 182224105 -99969559 - L1PBa LINE L1 -2648 4214 6 235 210 148 25 chr1 182224199 182224280 -99969384 + L2 LINE L2 3222 3312 -1 306 283 61 20 chr1 182224569 182224668 -99968996 - MER5B DNA MER1_type -75 103 1 1131 185 19 5 chr1 182224786 182225002 -99968662 + MER20 DNA MER1_type 1 219 0 824 274 75 77 chr1 182226037 182226584 -99967080 + LTR67 LTR ERVL 2 547 -10 428 280 24 16 chr1 182228959 182229084 -99964580 - MER5B DNA MER1_type -52 126 1 535 279 21 53 chr1 182229097 182229287 -99964377 - MER5A DNA MER1_type -5 184 1 1084 110 0 0 chr1 182229451 182229615 -99964049 - L1PA13 LINE L1 0 6163 6000 383 300 26 57 chr1 182229854 182230081 -99963583 - L3 LINE CR1 -3 1574 1355 413 294 48 7 chr1 182230207 182230353 -99963311 - MIR SINE MIR -55 207 56 696 315 79 14 chr1 182230855 182231147 -99962517 + L3 LINE CR1 1161 1471 -106 490 265 172 0 chr1 182231148 182231299 -99962365 - MER5A DNA MER1_type 0 189 13 252 374 0 9 chr1 182231303 182231410 -99962254 + L3 LINE CR1 1458 1563 -14 2234 104 0 0 chr1 182231498 182231796 -99961868 + AluSc SINE Alu 1 298 -11 27 29 0 0 chr1 182232419 182232453 -99961211 + AT_rich Low_complexity Low_complexity 1 34 0 317 260 122 8 chr1 182232565 182232688 -99960976 + L1ME3A LINE L1 2023 2159 -4237 * 341 279 33 77 chr1 182232680 182232815 -99960849 + L1ME3A LINE L1 3563 3689 -2526 1310 231 69 33 chr1 182232815 182233266 -99960398 + MLT1C LTR MaLR 1 467 0 341 279 33 77 chr1 182233266 182233313 -99960351 + L1ME3A LINE L1 3689 3737 -2478 340 259 26 35 chr1 182233593 182233709 -99959955 + L1ME3A LINE L1 3742 3856 -2359 2509 252 30 46 chr1 182233709 182234075 -99959589 + L1ME3A LINE L1 5205 5576 -663 2191 118 0 10 chr1 182234075 182234379 -99959285 + AluSx SINE Alu 1 301 -11 2509 252 30 46 chr1 182234379 182234971 -99958693 + L1ME3A LINE L1 5576 6147 -92 600 221 45 63 chr1 182234964 182234992 -99958672 + L1MEc LINE L1 4590 4617 -1598 * 2321 114 7 0 chr1 182234992 182235299 -99958365 + AluSx SINE Alu 1 309 -3 600 221 45 63 chr1 182235299 182235492 -99958172 + L1MEc LINE L1 4617 4807 -1408 240 100 0 0 chr1 182235585 182235625 -99958039 + (TG)n Simple_repeat Simple_repeat 2 41 0 490 95 0 0 chr1 182235862 182235936 -99957728 + MER3 DNA MER1_type 124 197 -12 259 289 63 42 chr1 182236689 182236879 -99956785 - MIR3 SINE MIR 0 208 15 605 304 67 0 chr1 182237176 182237370 -99956294 + MIR SINE MIR 56 262 0 1098 133 71 5 chr1 182237945 182238141 -99955523 + MER3 DNA MER1_type 1 209 0 434 239 49 7 chr1 182238169 182238311 -99955353 - L1MC4a LINE L1 -1874 5934 5787 2289 122 0 0 chr1 182238480 182238783 -99954881 + AluSg SINE Alu 1 303 -7 339 65 0 0 chr1 182239043 182239089 -99954575 + (TG)n Simple_repeat Simple_repeat 2 47 0 318 221 97 44 chr1 182239502 182239615 -99954049 + MIR3 SINE MIR 70 188 -20 330 98 0 0 chr1 182239753 182239804 -99953860 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 311 354 151 5 chr1 182239820 182240012 -99953652 - MIR SINE MIR -41 221 2 528 244 22 0 chr1 182242131 182242266 -99951398 - MIR SINE MIR -1 261 124 390 42 0 0 chr1 182243026 182243074 -99950590 + (TG)n Simple_repeat Simple_repeat 2 49 0 304 265 88 77 chr1 182243727 182243908 -99949756 - MIR3 SINE MIR -8 200 18 688 311 31 5 chr1 182244276 182244498 -99949166 + MIR SINE MIR 32 259 -3 204 323 121 0 chr1 182244531 182244630 -99949034 + L2 LINE L2 3161 3271 -1 2406 130 25 0 chr1 182245016 182245371 -99948293 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr1 182246541 182246562 -99947102 + AT_rich Low_complexity Low_complexity 1 21 0 257 288 129 22 chr1 182246876 182247015 -99946649 + MLT1J LTR MaLR 5 158 -353 365 282 58 37 chr1 182247821 182248009 -99945655 + L2 LINE L2 2568 2759 -555 270 360 75 36 chr1 182248040 182248318 -99945346 + L2 LINE L2 2937 3225 -47 1844 149 71 86 chr1 182248554 182248659 -99945005 + MLT1B LTR MaLR 1 106 -284 1572 170 111 54 chr1 182248659 182249101 -99944563 + MLT1C LTR MaLR 1 467 0 1844 149 71 86 chr1 182249101 182249391 -99944273 + MLT1B LTR MaLR 106 390 0 243 258 90 11 chr1 182249438 182249527 -99944137 - MIR3 SINE MIR -8 200 105 23 86 0 0 chr1 182249950 182250008 -99943656 + AT_rich Low_complexity Low_complexity 1 58 0 395 243 230 0 chr1 182250073 182250221 -99943443 + MIR SINE MIR 57 238 -24 195 331 124 0 chr1 182250246 182250367 -99943297 - MIR SINE MIR -123 139 4 352 316 29 12 chr1 182250999 182251172 -99942492 + MIR SINE MIR 38 212 -50 201 132 0 0 chr1 182252513 182252551 -99941113 + (TG)n Simple_repeat Simple_repeat 1 38 0 541 271 44 48 chr1 182252718 182252773 -99940891 - MIR SINE MIR -15 247 193 2351 74 0 27 chr1 182252773 182253070 -99940594 - AluY SINE Alu -12 299 11 541 271 44 48 chr1 182253070 182253243 -99940421 - MIR SINE MIR -69 193 20 375 374 68 0 chr1 182253818 182253965 -99939699 - MER91A DNA MER1_type -25 171 15 291 203 154 0 chr1 182255016 182255092 -99938572 - MIR SINE MIR -87 121 36 2792 254 156 31 chr1 182255408 182256430 -99937234 + L2 LINE L2 1311 2204 -1109 2257 104 0 3 chr1 182256430 182256728 -99936936 - AluSx SINE Alu -15 297 1 2792 254 156 31 chr1 182256728 182257473 -99936191 + L2 LINE L2 2204 3313 0 317 311 0 0 chr1 182257539 182257629 -99936035 - L1MC4 LINE L1 -1339 6703 6614 235 346 0 9 chr1 182258628 182258735 -99934929 + GA-rich Low_complexity Low_complexity 4 109 0 * 245 279 0 0 chr1 182258662 182258751 -99934913 + A-rich Low_complexity Low_complexity 1 89 0 517 225 85 8 chr1 182259676 182259805 -99933859 + L2 LINE L2 3134 3272 0 2066 204 74 66 chr1 182260129 182260794 -99932870 + LTR68 LTR ERV1 2 739 -1 1098 206 4 0 chr1 182260832 182261060 -99932604 - L1MA4 LINE L1 -11 6289 6061 609 262 21 37 chr1 182261517 182261704 -99931960 + MIR SINE MIR 79 262 0 210 258 32 0 chr1 182261699 182261761 -99931903 - L2 LINE L2 -2 3311 3248 * 1133 124 6 0 chr1 182262128 182262289 -99931375 + L1MC1 LINE L1 6170 6331 -2 5558 93 27 25 chr1 182264926 182264964 -99928700 - L1MA3 LINE L1 0 6305 6269 429 109 0 0 chr1 182264964 182265028 -99928636 + (TG)n Simple_repeat Simple_repeat 1 64 0 5558 93 27 25 chr1 182265028 182265836 -99927828 - L1MA3 LINE L1 -36 6269 5457 271 210 81 32 chr1 182266178 182266240 -99927424 - MER63C DNA MER1_type 0 931 867 559 227 25 0 chr1 182266244 182266363 -99927301 + AluJo SINE Alu 5 126 -186 22 0 0 0 chr1 182266363 182266385 -99927279 + AT_rich Low_complexity Low_complexity 1 22 0 375 124 0 135 chr1 182266385 182266474 -99927190 - MER63C DNA MER1_type -48 882 806 574 176 0 0 chr1 182266474 182266565 -99927099 + AluJo SINE Alu 136 226 -86 2061 151 16 37 chr1 182266609 182266992 -99926672 + THE1C LTR MaLR 1 375 0 397 129 16 0 chr1 182266992 182267054 -99926610 + FAM SINE Alu 105 167 -8 * 3500 198 40 27 chr1 182267051 182267859 -99925805 - MER63C DNA MER1_type -112 818 1 1360 244 41 39 chr1 182268361 182268775 -99924889 + MLT1C LTR MaLR 53 467 0 416 265 96 18 chr1 182269141 182269307 -99924357 - MIR SINE MIR -63 199 21 6636 115 9 10 chr1 182269340 182270297 -99923367 + LTR5 LTR ERVK 1 956 -13 1886 171 231 13 chr1 182272521 182272971 -99920693 + MLT2B3 LTR ERVL 5 552 -2 1755 167 13 29 chr1 182273060 182273366 -99920298 + AluJo SINE Alu 12 312 0 499 315 30 25 chr1 182273481 182273681 -99919983 + MIR SINE MIR 38 238 -24 383 196 11 43 chr1 182275374 182275466 -99918198 - MIR SINE MIR -108 154 66 3023 164 4 6 chr1 182275917 182276404 -99917260 - MER66B LTR ERV1 0 486 1 5061 159 14 5 chr1 182276581 182277428 -99916236 - L1PA16 LINE L1 0 6166 5312 1989 162 140 3 chr1 182277438 182277803 -99915861 + MSTB LTR MaLR 11 425 -1 9807 212 8 10 chr1 182277804 182280018 -99913646 - L1 LINE L1 -831 5315 3107 191 352 28 0 chr1 182280099 182280170 -99913494 + MIR SINE MIR 72 144 -64 1268 220 94 51 chr1 182280204 182280599 -99913065 + LTR16A LTR ERVL 16 427 -23 274 320 61 82 chr1 182280869 182280938 -99912726 - L2 LINE L2 -559 2755 2686 2165 116 10 13 chr1 182280938 182281249 -99912415 + AluSq SINE Alu 3 312 -1 274 320 61 82 chr1 182281249 182281719 -99911945 - L2 LINE L2 -628 2686 2227 270 155 103 0 chr1 182281896 182281954 -99911710 + L2 LINE L2 3205 3268 -4 184 231 0 0 chr1 182282260 182282299 -99911365 - MIR SINE MIR -59 149 111 449 303 154 9 chr1 182282373 182282594 -99911070 - MIR SINE MIR -6 256 4 240 276 38 19 chr1 182283076 182283181 -99910483 - L2 LINE L2 -234 3038 2932 21 0 0 0 chr1 182283840 182283861 -99909803 + AT_rich Low_complexity Low_complexity 1 21 0 1694 266 62 55 chr1 182283935 182284345 -99909319 - L1MC4 LINE L1 -92 7950 7544 2029 87 33 29 chr1 182284345 182284620 -99909044 - AluSg SINE Alu -12 298 23 1694 266 62 55 chr1 182284620 182285057 -99908607 - L1MC4 LINE L1 -498 7544 7097 4625 215 28 50 chr1 182285081 182285469 -99908195 - L1MEc LINE L1 -2703 3679 3284 1634 181 22 7 chr1 182285469 182285775 -99907889 - AluJo SINE Alu 0 310 1 4625 215 28 50 chr1 182285775 182286921 -99906743 - L1MEc LINE L1 -3098 3284 2216 380 249 60 35 chr1 182286924 182287125 -99906539 - L1MEc LINE L1 -4256 2128 1923 261 253 0 0 chr1 182288033 182288179 -99905485 + GA-rich Low_complexity Low_complexity 1 146 0 2362 61 10 14 chr1 182292204 182292499 -99901165 + AluY SINE Alu 1 294 -17 291 178 278 22 chr1 182292817 182292907 -99900757 + MER5A DNA MER1_type 77 189 0 823 201 11 11 chr1 182293141 182293315 -99900349 - FAM SINE Alu -1 174 1 1093 218 143 44 chr1 182293438 182293731 -99899933 + MER45B DNA AcHobo 8 329 -711 2104 180 40 12 chr1 182293749 182294172 -99899492 + MER45B DNA AcHobo 606 1040 0 321 89 0 0 chr1 182294387 182294432 -99899232 + (TG)n Simple_repeat Simple_repeat 1 45 0 402 287 28 7 chr1 182295106 182295249 -99898415 - MLT1J2 LTR MaLR -303 147 2 22 0 0 0 chr1 182295975 182295997 -99897667 + AT_rich Low_complexity Low_complexity 1 22 0 193 197 30 15 chr1 182296752 182296818 -99896846 + GA-rich Low_complexity Low_complexity 5 71 0 439 278 111 32 chr1 182297551 182297767 -99895897 - MIR SINE MIR -23 239 7 218 265 116 61 chr1 182298132 182298279 -99895385 - MIR3 SINE MIR -19 189 35 280 302 12 0 chr1 182299249 182299335 -99894329 + L2 LINE L2 3227 3313 0 1599 163 19 50 chr1 182299367 182299686 -99893978 + AluJo SINE Alu 1 309 -3 190 79 26 26 chr1 182299687 182299725 -99893939 + (GAGAA)n Simple_repeat Simple_repeat 3 40 0 207 0 0 0 chr1 182299734 182299757 -99893907 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 231 240 202 19 chr1 182299768 182299872 -99893792 + MIR SINE MIR 20 142 -120 229 257 143 0 chr1 182300569 182300639 -99893025 - MER63 DNA MER1_type -4 1058 979 377 172 82 131 chr1 182300649 182300771 -99892893 - MER63 DNA MER1_type -94 742 1 287 256 23 12 chr1 182301504 182301590 -99892074 - MIR SINE MIR -143 119 33 4084 131 17 12 chr1 182302912 182303561 -99890103 - MER39B LTR ERV1 -1 652 1 278 235 59 0 chr1 182303688 182303756 -99889908 - L2 LINE L2 -16 3297 3226 8680 69 3 2 chr1 182303757 182304827 -99888837 - MER11C LTR ERVK 0 1071 1 8181 64 2 0 chr1 182304827 182305825 -99887839 - HERVK11 LTR ERVK 0 7953 6954 * 17042 81 4 2 chr1 182305809 182307986 -99885678 - HERVK11 LTR ERVK -1188 6765 4585 9421 8 0 0 chr1 182307986 182308955 -99884709 + LTR5 LTR ERVK 1 969 0 61798 32 2 9 chr1 182308955 182316155 -99877509 + HERVK LTR ERVK 1 7148 -95 447 64 11 160 chr1 182316155 182316249 -99877415 + SVA Other Other 857 936 -450 8795 40 0 0 chr1 182316249 182317218 -99876446 + LTR5 LTR ERVK 1 969 0 26029 87 16 3 chr1 182317218 182320601 -99873063 - HERVK11 LTR ERVK -3363 4590 1165 915 101 101 0 chr1 182320601 182320750 -99872914 - HERVK11 LTR ERVK -7102 851 688 718 263 58 71 chr1 182320758 182321168 -99872496 - L2 LINE L2 -89 3224 2820 1260 234 146 3 chr1 182321346 182321709 -99871955 + MER69 DNA AcHobo 1 415 -2111 489 206 49 89 chr1 182321805 182322052 -99871612 + MER69 DNA AcHobo 2279 2515 -11 195 219 0 0 chr1 182322398 182322439 -99871225 - L2 LINE L2 0 3313 3273 606 253 82 5 chr1 182322521 182322715 -99870949 - MER69 DNA AcHobo -2191 335 127 255 256 115 0 chr1 182322753 182322831 -99870833 - L2 LINE L2 -40 3232 3146 1234 154 23 45 chr1 182322944 182323164 -99870500 - MER20 DNA MER1_type -4 215 1 2132 112 17 3 chr1 182323288 182323575 -99870089 - AluSq SINE Alu -22 291 1 235 100 0 0 chr1 182323879 182323919 -99869745 + MER41A LTR ERV1 428 467 -87 224 229 0 0 chr1 182324993 182325059 -99868605 + CT-rich Low_complexity Low_complexity 1 66 0 210 343 190 19 chr1 182325073 182325484 -99868180 - L2 LINE L2 0 3313 2833 759 322 35 20 chr1 182325538 182325935 -99867729 - L2 LINE L2 -563 2751 2349 569 289 74 11 chr1 182325937 182326127 -99867537 + MLT1G LTR MaLR 9 210 -380 388 241 23 0 chr1 182326289 182326376 -99867288 + MLT1G1 LTR MaLR 507 595 0 355 286 34 32 chr1 182326542 182326747 -99866917 - MIR SINE MIR -50 212 2 363 324 156 32 chr1 182326976 182327316 -99866348 - L2 LINE L2 0 3272 2891 556 275 31 0 chr1 182327410 182327570 -99866094 + MIR SINE MIR 81 245 -17 2393 118 10 51 chr1 182329580 182329652 -99864012 - THE1C LTR MaLR 0 375 302 1888 136 29 0 chr1 182329652 182329966 -99863698 - AluSx SINE Alu 0 322 1 2393 118 10 51 chr1 182329966 182330283 -99863381 - THE1C LTR MaLR -73 302 1 2798 132 5 2 chr1 182330461 182330907 -99862757 + L1MA5 LINE L1 5854 6300 0 242 158 0 0 chr1 182331150 182331188 -99862476 - AluJb SINE Alu -23 279 242 488 167 0 24 chr1 182331189 182331273 -99862391 - AluJb SINE Alu -162 150 69 554 266 31 79 chr1 182331294 182331523 -99862141 - MER52A LTR ERV1 -301 1454 1237 930 230 369 62 chr1 182331860 182332299 -99861365 - MER52A LTR ERV1 -522 1233 660 643 134 0 0 chr1 182332299 182332396 -99861268 + AluSq/x SINE Alu 35 131 -182 1740 191 77 27 chr1 182332449 182332887 -99860777 + LTR56 LTR ERV1 9 467 0 183 260 55 0 chr1 182333364 182333437 -99860227 - MIR SINE MIR -13 249 173 473 296 17 22 chr1 182333492 182333671 -99859993 - MIR SINE MIR -76 186 9 912 133 21 0 chr1 182334038 182334181 -99859483 + MER50 LTR ERV1 1 146 -588 1994 170 0 0 chr1 182334181 182334487 -99859177 + AluSx SINE Alu 5 310 -2 768 141 8 8 chr1 182334488 182334616 -99859048 + MER50 LTR ERV1 323 450 -284 894 161 19 0 chr1 182334617 182334772 -99858892 + MER50-int LTR ERV1 1 158 -7047 * 5213 142 5 22 chr1 182334769 182335681 -99857983 + MER50-int LTR ERV1 267 1243 -5962 850 107 8 0 chr1 182335681 182335825 -99857839 + AluSg/x SINE Alu 176 320 0 4027 129 15 20 chr1 182335827 182336437 -99857227 + MER50-int LTR ERV1 1236 1842 -5363 6951 224 105 84 chr1 182336438 182339648 -99854016 + MER50-int LTR ERV1 2789 6064 -1141 301 231 0 0 chr1 182340316 182340381 -99853283 - HERVK22 LTR ERVK -2962 3875 3811 2446 92 0 13 chr1 182341354 182341671 -99851993 + AluSp SINE Alu 1 313 0 1008 144 0 7 chr1 182342195 182342348 -99851316 + MER50-int LTR ERV1 6060 6211 -994 * 2468 123 24 5 chr1 182342337 182342712 -99850952 + MER50-int LTR ERV1 6815 7196 -9 4290 150 37 4 chr1 182342712 182343394 -99850270 + MER50 LTR ERV1 1 704 -30 777 158 199 116 chr1 182343647 182344028 -99849636 + LTR56 LTR ERV1 1 413 -198 615 212 115 36 chr1 182344027 182344192 -99849472 + LTR36 LTR ERV1 434 611 0 * 991 148 13 0 chr1 182344815 182345003 -99848661 - AluSc SINE Alu 0 321 132 367 322 210 20 chr1 182345120 182345776 -99847888 - L2 LINE L2 -494 2820 2040 2166 90 0 0 chr1 182345785 182346062 -99847602 + AluSc SINE Alu 1 277 -32 634 34 34 0 chr1 182346062 182346150 -99847514 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 204 40 0 0 chr1 182346149 182346174 -99847490 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 * 239 234 0 0 chr1 182346234 182346281 -99847383 - MST-int LTR MaLR -466 1185 1139 292 152 0 0 chr1 182346281 182346327 -99847337 + MSTB1 LTR MaLR 387 432 0 1178 167 10 10 chr1 182346329 182346565 -99847099 + MSTB1-int LTR MaLR 2 303 -1432 1547 148 126 7 chr1 182346656 182346934 -99846730 - MSTB LTR MaLR -115 311 1 2042 148 0 3 chr1 182347573 182347877 -99845787 + AluJb SINE Alu 1 303 -9 267 103 0 0 chr1 182347877 182347916 -99845748 + (TA)n Simple_repeat Simple_repeat 1 39 0 1479 189 11 18 chr1 182348018 182348303 -99845361 - AluJo SINE Alu -13 299 17 770 81 81 5 chr1 182348306 182348472 -99845192 + L1P4 LINE L1 5644 5816 -312 400 114 71 0 chr1 182348472 182348538 -99845126 + L1PA13 LINE L1 6089 6163 0 5959 51 0 9 chr1 182348617 182349356 -99844308 - L1PA7 LINE L1 -4 6150 5419 2341 274 115 2 chr1 182349687 182350741 -99842923 - L2 LINE L2 0 3313 2125 2752 146 10 5 chr1 182350741 182351152 -99842512 - MSTB LTR MaLR -13 413 1 257 174 139 47 chr1 182351157 182351243 -99842421 - L2 LINE L2 -1263 2051 1958 708 298 105 13 chr1 182351872 182352420 -99841244 - L1 LINE L1 -1870 4276 3653 5609 206 64 61 chr1 182352694 182353646 -99840018 + L1MDa LINE L1 34 982 -5558 1996 134 24 0 chr1 182353646 182353944 -99839720 + AluSx SINE Alu 1 305 -7 5609 206 64 61 chr1 182353944 182354604 -99839060 + L1MDa LINE L1 982 1639 -4901 2160 135 3 0 chr1 182354604 182354908 -99838756 + AluSx SINE Alu 1 305 -7 5609 206 64 61 chr1 182354908 182355414 -99838250 + L1MDa LINE L1 1639 2561 -3979 495 237 26 26 chr1 182355396 182355552 -99838112 + L1M4 LINE L1 4793 4948 -1198 * 877 162 76 16 chr1 182355563 182355748 -99837916 + L1MC/D LINE L1 1684 1879 -4661 1782 181 68 23 chr1 182355794 182356384 -99837280 + L1MC/D LINE L1 5343 5987 -743 252 366 46 7 chr1 182357779 182357932 -99835732 + MIR SINE MIR 55 213 -49 325 278 195 24 chr1 182357936 182358141 -99835523 - MIR SINE MIR -3 259 20 202 184 0 0 chr1 182358372 182358420 -99835244 + MIR SINE MIR 107 153 -109 414 278 119 7 chr1 182358991 182359142 -99834522 + MIR3 SINE MIR 40 207 -1 214 350 38 51 chr1 182359884 182360041 -99833623 + MIR3 SINE MIR 2 156 -52 1850 149 0 0 chr1 182360912 182361180 -99832484 - AluJb SINE Alu -34 278 11 236 293 152 10 chr1 182361239 182361338 -99832326 + L2 LINE L2 3160 3272 0 248 283 30 30 chr1 182362614 182362713 -99830951 + MIR SINE MIR 10 108 -154 1138 229 5 0 chr1 182362763 182362986 -99830678 - MER58A DNA MER1_type 0 224 1 807 183 112 37 chr1 182363319 182363560 -99830104 - ORSL DNA AcHobo -16 259 1 4317 110 3 3 chr1 182363745 182364347 -99829317 - LTR43 LTR ERV1 0 602 1 426 250 47 21 chr1 182364462 182364599 -99829065 + MIR SINE MIR 50 191 -68 1870 129 3 64 chr1 182364599 182364910 -99828754 + AluSx SINE Alu 1 292 -20 647 226 36 12 chr1 182365731 182365899 -99827765 + L3 LINE CR1 1399 1570 -7 303 342 42 8 chr1 182365957 182366077 -99827587 + MIR SINE MIR 54 177 -85 254 136 0 34 chr1 182366775 182366834 -99826830 + (TTA)n Simple_repeat Simple_repeat 3 59 0 344 275 92 0 chr1 182367673 182367782 -99825882 - L2 LINE L2 -1 3271 3153 505 254 18 0 chr1 182368349 182368459 -99825205 - MER81 DNA DNA -2 112 1 423 0 0 0 chr1 182369018 182369065 -99824599 + (TC)n Simple_repeat Simple_repeat 2 48 0 * 438 69 0 0 chr1 182369064 182369122 -99824542 + (TA)n Simple_repeat Simple_repeat 1 58 0 187 267 208 30 chr1 182371334 182371371 -99822293 - L2 LINE L2 -1 3271 3242 2153 128 0 0 chr1 182371371 182371669 -99821995 + AluSq SINE Alu 1 298 -15 187 267 208 30 chr1 182371669 182371732 -99821932 - L2 LINE L2 -30 3242 3153 288 171 95 0 chr1 182371919 182371993 -99821671 + MER31A LTR ERV1 351 440 -26 2265 88 0 10 chr1 182372131 182372426 -99821238 + AluSx SINE Alu 1 292 -20 332 160 67 0 chr1 182372438 182372513 -99821151 + L1PA16 LINE L1 6086 6165 -1 1172 104 0 37 chr1 182372517 182372681 -99820983 + AluSg/x SINE Alu 148 305 -7 1883 158 0 14 chr1 182372690 182372982 -99820682 + AluJb SINE Alu 1 288 -24 277 319 115 11 chr1 182373036 182373218 -99820446 + L1ME4a LINE L1 5874 6074 -47 610 266 184 31 chr1 182373930 182374321 -99819343 - L2 LINE L2 0 3313 2863 405 293 27 7 chr1 182374327 182374477 -99819187 - L2 LINE L2 -609 2705 2553 233 227 0 0 chr1 182375288 182375332 -99818332 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 315 0 0 0 chr1 182375415 182375450 -99818214 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 42 20 0 0 chr1 182375479 182375528 -99818136 + AT_rich Low_complexity Low_complexity 1 49 0 204 277 62 0 chr1 182375621 182375686 -99817978 - L2 LINE L2 -108 3164 3096 1942 214 65 63 chr1 182375716 182376053 -99817611 - MLT2B3 LTR ERVL 0 554 219 210 37 0 0 chr1 182376053 182376080 -99817584 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 709 200 23 0 chr1 182376085 182376215 -99817449 - FLAM_A SINE Alu 0 133 1 1942 214 65 63 chr1 182376215 182376423 -99817241 - MLT2B3 LTR ERVL -338 216 2 33590 160 30 17 chr1 182376424 182377497 -99816167 - ERVL-B3-B1 LTR ERVL -7 5757 4699 1741 216 17 3 chr1 182377497 182377853 -99815811 + MLT1A1 LTR MaLR 5 365 0 33590 160 30 17 chr1 182377853 182382079 -99811585 - ERVL-B3-B1 LTR ERVL -1065 4699 528 180 0 0 0 chr1 182382079 182382099 -99811565 + (TA)n Simple_repeat Simple_repeat 2 21 0 2489 82 0 0 chr1 182382099 182382402 -99811262 - AluSx SINE Alu -9 303 1 33590 160 30 17 chr1 182382402 182382782 -99810882 - ERVL-B3-B1 LTR ERVL -5235 529 4 2578 178 44 48 chr1 182382785 182383116 -99810548 - MLT2B1 LTR ERVL 0 520 189 2504 135 8 0 chr1 182383116 182383495 -99810169 - L1PA13 LINE L1 0 6163 5782 1699 129 17 31 chr1 182383495 182383789 -99809875 - L1MA5A LINE L1 -5 6292 6003 2578 178 44 48 chr1 182383789 182383978 -99809686 - MLT2B1 LTR ERVL -329 191 1 539 139 10 0 chr1 182384454 182384555 -99809109 + GA-rich Low_complexity Low_complexity 1 102 0 437 241 28 41 chr1 182384586 182384731 -99808933 + MIR SINE MIR 78 220 -42 275 262 12 24 chr1 182385455 182385539 -99808125 + L2 LINE L2 3186 3268 -45 333 256 13 0 chr1 182385561 182385639 -99808025 - MIR3 SINE MIR -12 196 118 2226 120 3 25 chr1 182385873 182386190 -99807474 - AluSx SINE Alu -2 310 1 2088 174 154 22 chr1 182386558 182387051 -99806613 + LTR64 LTR ERVK 1 558 0 199 346 162 7 chr1 182387056 182387192 -99806472 - L2 LINE L2 -9 3263 3107 21 82 0 0 chr1 182388366 182388415 -99805249 + AT_rich Low_complexity Low_complexity 1 49 0 673 216 120 60 chr1 182388514 182388848 -99804816 - HAL1 LINE L1 -118 2389 2036 1611 186 85 12 chr1 182388879 182389027 -99804637 + MSTD LTR MaLR 45 181 -215 321 47 0 0 chr1 182389027 182389070 -99804594 + (CA)n Simple_repeat Simple_repeat 1 43 0 1611 186 85 12 chr1 182389070 182389249 -99804415 + MSTD LTR MaLR 181 396 0 1111 249 22 63 chr1 182389251 182389757 -99803907 - HAL1 LINE L1 -1256 1251 767 303 279 37 62 chr1 182390133 182390294 -99803370 - L2 LINE L2 -1 3312 3156 811 182 0 21 chr1 182390298 182390441 -99803223 + FLAM_C SINE Alu 2 141 -2 534 232 142 0 chr1 182390441 182390596 -99803068 - MER93b LTR ERV1 -196 177 1 198 329 100 0 chr1 182390610 182390680 -99802984 - L2 LINE L2 -224 3089 3013 278 314 8 48 chr1 182391629 182391753 -99801911 + L2 LINE L2 3154 3272 0 1352 164 46 0 chr1 182391821 182392101 -99801563 - L1MA7 LINE L1 -3 6288 5996 335 273 110 65 chr1 182394632 182394786 -99798878 - MIR SINE MIR -70 192 32 283 344 44 19 chr1 182395419 182395579 -99798085 + MIR SINE MIR 19 182 -80 2057 202 100 7 chr1 182396101 182396561 -99797103 + REP3 LTR ERV 1 503 -59 189 326 12 47 chr1 182396835 182396921 -99796743 - MER5B DNA MER1_type -75 103 21 348 214 90 0 chr1 182397529 182397618 -99796046 - MIR SINE MIR -82 180 84 559 252 69 6 chr1 182397785 182397972 -99795692 + MIR SINE MIR 14 206 -56 692 250 30 25 chr1 182399078 182399305 -99794359 - MIR SINE MIR -35 227 1 251 200 44 100 chr1 182399744 182399834 -99793830 + MIR SINE MIR 102 186 -76 2238 112 3 3 chr1 182399835 182400131 -99793533 - AluSp SINE Alu -17 296 1 5621 40 6 1 chr1 182400282 182406238 -99787426 + L1PA3 LINE L1 1 6155 0 258 229 0 0 chr1 182406815 182406885 -99786779 + (CA)n Simple_repeat Simple_repeat 1 70 0 990 205 78 37 chr1 182407607 182407875 -99785789 + MLT2B2 LTR ERVL 237 515 0 402 270 61 49 chr1 182407953 182408116 -99785548 - L2 LINE L2 -2 3270 3106 255 238 32 0 chr1 182408152 182408215 -99785449 + MIR SINE MIR 41 105 -157 26 0 0 0 chr1 182408324 182408350 -99785314 + AT_rich Low_complexity Low_complexity 1 26 0 1937 136 3 3 chr1 182408459 182408745 -99784919 + AluJb SINE Alu 1 286 -26 189 0 0 0 chr1 182408749 182408770 -99784894 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1533 183 0 135 chr1 182409038 182409410 -99784254 - MLT1A1 LTR MaLR 0 365 55 2222 115 3 7 chr1 182409410 182409706 -99783958 + AluSx SINE Alu 1 295 -17 1533 183 0 135 chr1 182409706 182409755 -99783909 - MLT1A1 LTR MaLR -310 55 1 1802 74 7 70 chr1 182410010 182410281 -99783383 - AluSq SINE Alu -21 292 39 1018 114 0 0 chr1 182410284 182410416 -99783248 - AluSp SINE Alu -181 132 1 494 283 0 1 chr1 182411241 182411406 -99782258 + MIR SINE MIR 99 262 0 272 236 0 101 chr1 182411704 182411793 -99781871 - MER96 DNA MER1_type? 0 175 96 664 278 86 0 chr1 182411879 182412088 -99781576 + MIR SINE MIR 31 257 -5 319 194 0 0 chr1 182412374 182412436 -99781228 - MLT1K LTR MaLR -23 565 504 1282 211 25 173 chr1 182412436 182413112 -99780552 - MLT1E LTR MaLR 0 593 18 264 149 0 0 chr1 182413267 182413314 -99780350 + (CA)n Simple_repeat Simple_repeat 2 48 0 2133 117 7 0 chr1 182413588 182413879 -99779785 - AluSc SINE Alu -3 306 14 252 0 0 0 chr1 182415064 182415092 -99778572 + (CA)n Simple_repeat Simple_repeat 2 29 0 430 302 99 0 chr1 182415497 182415683 -99777981 + MIR SINE MIR 35 242 -20 1739 159 33 26 chr1 182417317 182417746 -99775918 - L1MA4A LINE L1 0 6300 5810 4940 145 25 26 chr1 182417747 182419014 -99774650 - L1PB4 LINE L1 0 6858 5595 243 0 0 0 chr1 182419903 182419930 -99773734 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 13160 195 58 34 chr1 182419937 182420201 -99773463 - L1PB4 LINE L1 -1251 5597 5341 1961 141 7 0 chr1 182420201 182420492 -99773172 + AluSq SINE Alu 1 293 -20 13160 195 58 34 chr1 182420492 182420927 -99772737 - L1PB4 LINE L1 -1507 5341 4918 1943 163 0 7 chr1 182420927 182421221 -99772443 + AluJb SINE Alu 1 292 -20 13160 195 58 34 chr1 182421221 182422943 -99770721 - L1PB4 LINE L1 -1930 4918 3238 369 0 0 0 chr1 182422943 182422984 -99770680 + (CA)n Simple_repeat Simple_repeat 1 41 0 13160 195 58 34 chr1 182422984 182426022 -99767642 - L1PB4 LINE L1 -3610 3238 1 349 211 14 164 chr1 182426183 182426391 -99767273 - L1MC/D LINE L1 -2029 5779 5603 636 240 0 0 chr1 182426391 182426520 -99767144 - FLAM_A SINE Alu -4 129 1 315 71 0 0 chr1 182426535 182426577 -99767087 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1079 171 130 82 chr1 182426590 182426859 -99766805 - AluJo SINE Alu -30 282 1 681 238 61 78 chr1 182426861 182427077 -99766587 - L1MC/D LINE L1 -2197 5611 5393 1797 168 13 10 chr1 182427077 182427380 -99766284 - AluSx SINE Alu -8 304 1 681 238 61 78 chr1 182427380 182427451 -99766213 - L1MC/D LINE L1 -2415 5393 5322 2198 160 18 13 chr1 182427451 182427839 -99765825 - MLT1B LTR MaLR 0 390 1 5305 206 49 53 chr1 182427840 182429216 -99764448 - MLT1B-int LTR MaLR -1 1370 1 2032 157 27 55 chr1 182429216 182429617 -99764047 - MLT1B LTR MaLR 0 390 1 681 238 61 78 chr1 182429617 182429686 -99763978 - L1MC/D LINE L1 -2484 5324 5257 239 262 40 71 chr1 182429683 182429809 -99763855 + L1MC/D LINE L1 5791 5912 -1896 * 2364 99 0 0 chr1 182430005 182430297 -99763367 + AluSx SINE Alu 1 292 -20 203 321 97 72 chr1 182430490 182430727 -99762937 - L2 LINE L2 -4 3268 3026 188 83 0 56 chr1 182431494 182431530 -99762134 + (GGA)n Simple_repeat Simple_repeat 2 35 0 2329 98 3 0 chr1 182432261 182432557 -99761107 + AluSq SINE Alu 1 297 -16 586 262 73 21 chr1 182432557 182432748 -99760916 + MLT1H LTR MaLR 96 296 -253 434 199 131 2 chr1 182432874 182432996 -99760668 + L1MB8 LINE L1 5715 5851 -318 1211 135 15 65 chr1 182433001 182433261 -99760403 + L1MB8 LINE L1 5918 6164 -14 300 262 29 10 chr1 182433321 182433424 -99760240 + LTR37B LTR ERV1 14 118 -350 * 386 200 114 19 chr1 182433406 182433511 -99760153 + MER3 DNA MER1_type 27 141 -68 862 170 45 27 chr1 182433518 182433622 -99760042 + MER3 DNA MER1_type 2236 2337 -287 2322 170 70 81 chr1 182433622 182433902 -99759762 - LTR9 LTR ERV1 0 612 330 2404 68 3 0 chr1 182433902 182434194 -99759470 - AluSp SINE Alu -20 293 1 2322 170 70 81 chr1 182434194 182434532 -99759132 - LTR9 LTR ERV1 -282 330 1 862 170 45 27 chr1 182434532 182434651 -99759013 + MER3 DNA MER1_type 2337 2463 -161 288 91 0 0 chr1 182434652 182434696 -99758968 + (TA)n Simple_repeat Simple_repeat 1 44 0 1745 141 15 0 chr1 182434696 182434966 -99758698 - AluJb SINE Alu -17 295 22 21 36 0 0 chr1 182435337 182435365 -99758299 + AT_rich Low_complexity Low_complexity 1 28 0 11213 38 6 4 chr1 182435741 182437103 -99756561 - L1P LINE L1 -1606 4540 3177 291 222 33 33 chr1 182438948 182439038 -99754626 - HAL1b LINE L1 -869 479 390 2008 182 41 7 chr1 182439155 182439568 -99754096 - L1MB4 LINE L1 -1 6179 5753 1580 186 50 4 chr1 182440193 182440472 -99753192 - AluJo SINE Alu -20 292 1 314 269 185 92 chr1 182440610 182440848 -99752816 - MIR SINE MIR 0 262 3 2132 115 3 13 chr1 182442691 182443003 -99750661 - AluSx SINE Alu -3 309 1 312 27 0 0 chr1 182443963 182444000 -99749664 + AluSg/x SINE Alu 100 136 -164 1805 148 55 7 chr1 182444003 182444293 -99749371 + AluSx SINE Alu 1 304 -8 58 24 0 12 chr1 182444304 182444357 -99749307 + AT_rich Low_complexity Low_complexity 1 54 -28 2392 79 0 3 chr1 182444357 182444647 -99749017 + AluSx SINE Alu 1 289 -23 58 24 0 12 chr1 182444647 182444676 -99748988 + AT_rich Low_complexity Low_complexity 54 82 0 491 328 65 4 chr1 182445260 182445507 -99748157 - L1ME LINE L1 -299 5822 5561 22 56 0 0 chr1 182445987 182446023 -99747641 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 182446036 182446068 -99747596 + AT_rich Low_complexity Low_complexity 1 32 0 304 313 30 38 chr1 182446085 182446216 -99747448 - L2 LINE L2 -6 3266 3137 2214 110 7 13 chr1 182447040 182447348 -99746316 + AluSx SINE Alu 1 306 -6 269 275 44 33 chr1 182447383 182447474 -99746190 + MIR SINE MIR 22 113 -95 1983 85 4 0 chr1 182447782 182448028 -99745636 - AluSp SINE Alu -66 247 1 2421 90 3 0 chr1 182448182 182448492 -99745172 - AluSx SINE Alu -1 311 1 192 152 0 0 chr1 182449213 182449246 -99744418 + CT-rich Low_complexity Low_complexity 3 35 0 28 0 0 0 chr1 182451014 182451042 -99742622 + AT_rich Low_complexity Low_complexity 1 28 0 1085 128 7 0 chr1 182451212 182451361 -99742303 - AluSq/x SINE Alu -162 150 1 270 254 0 0 chr1 182451821 182451892 -99741772 - MIR SINE MIR -8 254 184 1710 182 39 0 chr1 182452669 182453027 -99740637 - Charlie5 DNA MER1_type -4 2608 2237 473 217 96 0 chr1 182453028 182453143 -99740521 - Charlie5 DNA MER1_type -2486 126 1 523 286 32 7 chr1 182453251 182453405 -99740259 - MIR SINE MIR -22 240 83 204 268 207 0 chr1 182453684 182453766 -99739898 + L2 LINE L2 3214 3312 -1 314 271 14 0 chr1 182454133 182454203 -99739461 - MLT1K LTR MaLR -1 587 517 390 311 17 45 chr1 182454439 182454616 -99739048 - MLT1K LTR MaLR -249 339 168 349 176 0 15 chr1 182455115 182455183 -99738481 + MER5A DNA MER1_type 9 75 -114 2128 138 0 3 chr1 182455183 182455495 -99738169 + AluSx SINE Alu 1 311 -1 339 130 0 0 chr1 182455499 182455553 -99738111 + (GGGA)n Simple_repeat Simple_repeat 3 56 0 232 268 0 0 chr1 182455586 182455642 -99738022 + MER5A DNA MER1_type 128 183 -6 23 33 0 0 chr1 182455850 182455880 -99737784 + AT_rich Low_complexity Low_complexity 1 30 0 194 0 39 0 chr1 182456086 182456112 -99737552 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2276 119 6 0 chr1 182456543 182456854 -99736810 + AluSq SINE Alu 1 313 0 194 368 0 13 chr1 182457344 182457420 -99736244 + MIR SINE MIR 2 76 -186 686 256 136 34 chr1 182457516 182457754 -99735910 + MIR SINE MIR 3 251 -11 3741 141 52 0 chr1 182457770 182458352 -99735312 - LTR9 LTR ERV1 0 612 1 2462 76 3 3 chr1 182460384 182460687 -99732977 + AluY SINE Alu 1 303 -8 1312 156 0 23 chr1 182460690 182460908 -99732756 + AluJb SINE Alu 85 297 -15 253 317 90 7 chr1 182460995 182461140 -99732524 - MIR SINE MIR -55 207 51 21 0 0 0 chr1 182461287 182461308 -99732356 + AT_rich Low_complexity Low_complexity 1 21 0 2404 97 0 0 chr1 182461313 182461611 -99732053 + AluSq SINE Alu 1 298 -15 2843 108 32 25 chr1 182461616 182462059 -99731605 - Tigger2 DNA MER2_type 0 2718 2273 305 143 32 32 chr1 182462046 182462102 -99731562 - Tigger2 DNA MER2_type -2646 72 14 * 1057 94 0 0 chr1 182462102 182462240 -99731424 - MER85 DNA T2_type -1 138 1 596 262 59 49 chr1 182463856 182464142 -99729522 + L1MC4a LINE L1 5645 5933 -1875 2203 129 0 16 chr1 182464152 182464613 -99729051 + AluSx SINE Alu 1 456 0 244 294 137 34 chr1 182464639 182464785 -99728879 + HAL1 LINE L1 2333 2493 -14 180 353 0 0 chr1 182465097 182465165 -99728499 + L2 LINE L2 3202 3269 -3 494 234 46 40 chr1 182467140 182467315 -99726349 - MIR SINE MIR -79 183 8 387 245 56 42 chr1 182467536 182467679 -99725985 + MIR SINE MIR 109 253 -9 383 267 25 8 chr1 182467979 182468099 -99725565 + MIR3 SINE MIR 76 197 -11 263 161 0 16 chr1 182468670 182468732 -99724932 + (CA)n Simple_repeat Simple_repeat 2 62 0 210 224 15 90 chr1 182469975 182470042 -99723622 + MIR SINE MIR 16 77 -131 * 238 287 108 77 chr1 182470038 182470096 -99723568 - MIR SINE MIR -15 247 192 2173 110 10 3 chr1 182470096 182470395 -99723269 - AluSg SINE Alu -9 301 1 238 287 108 77 chr1 182470395 182470531 -99723133 - MIR SINE MIR -70 192 47 305 233 56 45 chr1 182471060 182471210 -99722454 + MIR SINE MIR 60 200 -62 817 212 7 0 chr1 182471210 182471356 -99722308 + FRAM SINE Alu 1 147 -19 489 134 0 21 chr1 182471356 182471453 -99722211 + L1PB1 LINE L1 6056 6150 -1 195 114 0 0 chr1 182473222 182473257 -99720407 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 210 197 96 157 chr1 182474972 182475170 -99718494 + MIR SINE MIR 13 198 -64 1786 165 26 41 chr1 182475170 182475515 -99718149 - MER2 DNA MER2_type 0 345 6 496 237 26 33 chr1 182475720 182475872 -99717792 - MIR SINE MIR -32 230 80 858 164 0 21 chr1 182475872 182476012 -99717652 - FLAM_C SINE Alu -6 137 1 1966 81 12 4 chr1 182476055 182476301 -99717363 - AluSg SINE Alu -62 248 1 221 214 86 0 chr1 182477851 182477921 -99715743 - MIR SINE MIR -3 259 184 183 42 0 0 chr1 182477984 182478008 -99715656 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 927 123 0 8 chr1 182478011 182478141 -99715523 - FRAM SINE Alu -30 146 18 237 275 53 41 chr1 182479407 182479578 -99714086 + L1ME LINE L1 178 350 -5855 1962 244 55 15 chr1 182480149 182480436 -99713228 + MLT1H LTR MaLR 52 367 -182 2046 146 0 7 chr1 182480436 182480744 -99712920 + AluSx SINE Alu 1 306 -6 1962 244 55 15 chr1 182480744 182480931 -99712733 + MLT1H LTR MaLR 367 545 -4 832 232 98 5 chr1 182480946 182481317 -99712347 + L1ME LINE L1 1013 1348 -4867 2391 110 0 0 chr1 182481317 182481626 -99712038 + AluSq SINE Alu 1 309 -4 832 232 98 5 chr1 182481626 182481801 -99711863 + L1ME LINE L1 1348 1505 -4710 1693 112 12 8 chr1 182481801 182482059 -99711605 - L1PB1 LINE L1 0 6151 5893 832 232 98 5 chr1 182482059 182482131 -99711533 + L1ME LINE L1 1505 1569 -4646 1795 156 11 0 chr1 182482131 182482413 -99711251 + AluSx SINE Alu 4 288 -24 832 232 98 5 chr1 182482413 182483006 -99710658 + L1ME LINE L1 1569 2615 -3600 1305 234 36 55 chr1 182483120 182483645 -99710019 + L1ME LINE L1 2792 3306 -2909 3636 158 56 72 chr1 182484187 182484936 -99708728 + MER21A LTR ERV1 195 931 0 2656 66 6 0 chr1 182484968 182485303 -99708361 - L1PA8 LINE L1 0 6172 5836 2203 243 33 29 chr1 182485304 182485427 -99708237 + L1ME LINE L1 4141 4262 -1953 2164 79 50 0 chr1 182485427 182485706 -99707958 + AluSq SINE Alu 1 293 -20 2203 243 33 29 chr1 182485706 182486343 -99707321 + L1ME LINE L1 4262 4904 -1311 3352 173 140 35 chr1 182486345 182487117 -99706547 - MER21B LTR ERV1 0 931 1 742 260 16 0 chr1 182487136 182487328 -99706336 + L1ME LINE L1 4968 5162 -1053 203 175 0 0 chr1 182487328 182487368 -99706296 + T-rich Low_complexity Low_complexity 3 42 0 1032 122 0 0 chr1 182487385 182487524 -99706140 - AluJb SINE Alu -171 141 3 966 201 50 122 chr1 182487565 182487951 -99705713 + L1ME LINE L1 5176 5526 -705 2081 117 3 0 chr1 182487951 182488241 -99705423 + AluSx SINE Alu 1 291 -21 966 201 50 122 chr1 182488241 182488398 -99705266 + L1ME LINE L1 5526 5693 -538 311 282 145 0 chr1 182489180 182489292 -99704372 - MIR3 SINE MIR -11 197 60 205 293 54 133 chr1 182489463 182489780 -99703884 + L2 LINE L2 2891 3182 -90 1852 194 52 18 chr1 182489781 182490162 -99703502 + MLT1D LTR MaLR 107 500 -5 1882 129 18 14 chr1 182490808 182490951 -99702713 - AluSq SINE Alu -32 281 135 2585 60 3 13 chr1 182490951 182491265 -99702399 - AluSp SINE Alu -2 311 1 1882 129 18 14 chr1 182491265 182491401 -99702263 - AluSq SINE Alu -178 135 1 1496 105 8 59 chr1 182491404 182491592 -99702072 - AluSg/x SINE Alu -1 311 136 2245 113 3 0 chr1 182491592 182491901 -99701763 - AluSp SINE Alu -2 311 2 1496 105 8 59 chr1 182491901 182491951 -99701713 - AluSg/x SINE Alu -176 136 85 888 153 0 15 chr1 182491953 182492084 -99701580 - FLAM_C SINE Alu -4 129 1 1914 141 46 0 chr1 182492116 182492399 -99701265 + AluSx SINE Alu 1 296 -16 820 202 6 45 chr1 182492399 182492577 -99701087 + AluJo/FRAM SINE Alu 134 304 -8 31 58 0 0 chr1 182492612 182492664 -99701000 + AT_rich Low_complexity Low_complexity 1 52 0 1918 141 3 0 chr1 182492717 182493031 -99700633 + AluSx SINE Alu 1 315 0 195 184 0 0 chr1 182493096 182493134 -99700530 + CT-rich Low_complexity Low_complexity 1 38 0 638 183 0 71 chr1 182493160 182493286 -99700378 - AluJo/FRAM SINE Alu -39 273 157 1641 102 5 0 chr1 182493286 182493502 -99700162 - AluSg SINE Alu -93 217 1 386 188 35 153 chr1 182493513 182493715 -99699949 - LTR37A LTR ERV1 -207 219 42 3083 136 164 6 chr1 182493840 182494377 -99699287 - LTR29 LTR ERV1 0 622 1 1218 201 33 99 chr1 182494615 182495205 -99698459 + MER67B LTR ERV1 59 487 -56 2233 107 0 7 chr1 182495205 182495505 -99698159 + AluSp SINE Alu 1 298 -15 1218 201 33 99 chr1 182495505 182495559 -99698105 + MER67B LTR ERV1 487 543 0 652 229 96 33 chr1 182495966 182496061 -99697603 - L1MC4a LINE L1 -1643 6165 6077 2472 63 0 0 chr1 182496061 182496361 -99697303 - AluY SINE Alu -11 300 1 652 229 96 33 chr1 182496361 182496505 -99697159 - L1MC4a LINE L1 -1731 6077 5911 892 137 0 43 chr1 182496506 182496645 -99697019 - FLAM_C SINE Alu 0 133 1 2399 81 0 7 chr1 182496657 182496966 -99696698 - AluSg SINE Alu -2 308 2 277 105 0 0 chr1 182497026 182497064 -99696600 - L1MC4a LINE L1 -2323 5485 5448 244 152 22 0 chr1 182497146 182497192 -99696472 + Alu SINE Alu 1 47 -254 11419 55 0 1 chr1 182497297 182498745 -99694919 - L1P LINE L1 -2256 3890 2445 189 0 0 0 chr1 182498916 182498937 -99694727 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 24 32 0 0 chr1 182499085 182499116 -99694548 + AT_rich Low_complexity Low_complexity 1 31 0 1964 153 0 7 chr1 182500220 182500520 -99693144 + AluSx SINE Alu 1 298 -14 976 156 101 45 chr1 182501969 182502354 -99691310 - LTR7 LTR ERV1 0 450 1 252 250 70 50 chr1 182504033 182504133 -99689531 + HERVK22 LTR ERVK 4590 4691 -2552 481 247 0 0 chr1 182505728 182505821 -99687843 + L2 LINE L2 3180 3272 0 2057 122 0 4 chr1 182505952 182506231 -99687433 + AluSg SINE Alu 1 278 -32 304 0 64 21 chr1 182506233 182506280 -99687384 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 4814 182 28 19 chr1 182506578 182507916 -99685748 + L1MB5 LINE L1 4824 6174 0 842 204 19 0 chr1 182508281 182508443 -99685221 + MLT1B LTR MaLR 226 390 0 371 169 87 98 chr1 182508885 182509068 -99684596 + HERVK22 LTR ERVK 4430 4610 -2227 337 353 24 37 chr1 182510366 182510418 -99683246 + HERVK22 LTR ERVK 6152 6203 -634 4839 87 85 0 chr1 182510418 182511052 -99682612 - LTR12 LTR ERV1 0 688 1 337 353 24 37 chr1 182511052 182511376 -99682288 + HERVK22 LTR ERVK 6203 6523 -314 663 95 0 0 chr1 182511439 182511523 -99682141 + AluY SINE Alu 2 85 -226 14911 61 2 12 chr1 182511681 182513635 -99680029 + L1P LINE L1 3087 5021 -1125 274 316 80 22 chr1 182514099 182514324 -99679340 - L2 LINE L2 -355 2959 2722 183 156 0 0 chr1 182514969 182515001 -99678663 + CT-rich Low_complexity Low_complexity 2 33 0 888 143 8 136 chr1 182515059 182515310 -99678354 - MER20 DNA MER1_type 0 219 1 6739 108 4 0 chr1 182516349 182517276 -99676388 - THE1A-int LTR MaLR -649 931 1 2799 83 11 0 chr1 182517276 182517627 -99676037 - THE1A LTR MaLR 0 355 1 1838 108 4 36 chr1 182517627 182517905 -99675759 - Tigger2a DNA MER2_type -165 269 1 563 273 77 77 chr1 182518168 182518545 -99675119 - MLT1I LTR MaLR 0 409 33 332 305 11 0 chr1 182519612 182519707 -99673957 + GA-rich Low_complexity Low_complexity 5 100 0 422 288 26 39 chr1 182519999 182520152 -99673512 - L1ME3A LINE L1 -54 6116 5966 297 302 95 0 chr1 182520170 182520286 -99673378 - L1M4 LINE L1 -1359 4787 4661 405 58 0 0 chr1 182520290 182520342 -99673322 + (CA)n Simple_repeat Simple_repeat 2 53 0 312 236 163 11 chr1 182520342 182520520 -99673144 - L1M4 LINE L1 -1534 4612 4408 307 91 0 0 chr1 182520523 182520567 -99673097 - AluJo SINE Alu -4 298 255 1269 173 0 5 chr1 182520567 182520764 -99672900 - AluJo SINE Alu -110 202 7 385 189 21 0 chr1 182520768 182520863 -99672801 - L1M4 LINE L1 -1732 4414 4318 187 120 20 20 chr1 182520868 182520918 -99672746 + (TA)n Simple_repeat Simple_repeat 2 51 0 2082 148 0 0 chr1 182521463 182521767 -99671897 - AluJb SINE Alu -8 304 1 488 178 186 0 chr1 182521803 182521921 -99671743 + MER104 DNA Tc2 36 175 -5 492 214 42 74 chr1 182521973 182522089 -99671575 + MIR SINE MIR 33 142 -114 2014 149 0 3 chr1 182522089 182522390 -99671274 + AluSx SINE Alu 1 300 -12 492 214 42 74 chr1 182522390 182522439 -99671225 + MIR SINE MIR 142 191 -65 3879 171 4 105 chr1 182522873 182523570 -99670094 + L1 LINE L1 3926 4692 -1454 508 160 0 0 chr1 182523570 182523645 -99670019 + AluS SINE Alu 2 76 -237 3879 171 4 105 chr1 182523645 182523670 -99669994 + L1 LINE L1 4692 4718 -1428 1614 175 31 21 chr1 182523670 182523956 -99669708 + AluJb SINE Alu 1 289 -23 3879 171 4 105 chr1 182523956 182524142 -99669522 + L1 LINE L1 4718 4810 -1336 424 247 65 39 chr1 182524244 182524398 -99669266 - MER58C DNA MER1_type -31 184 27 1950 154 10 0 chr1 182524539 182524837 -99668827 + AluSx SINE Alu 1 301 -11 324 0 0 0 chr1 182524843 182524879 -99668785 + (CA)n Simple_repeat Simple_repeat 1 36 0 1144 158 0 0 chr1 182524879 182525050 -99668614 + AluJb SINE Alu 132 302 -10 328 224 56 19 chr1 182525491 182525598 -99668066 - MER46C DNA MER2_type 0 338 228 232 152 0 43 chr1 182525695 182525741 -99667923 - MER46C DNA MER2_type -294 44 1 2194 120 0 0 chr1 182526183 182526474 -99667190 + AluSq SINE Alu 1 291 -22 1588 167 50 23 chr1 182526497 182526797 -99666867 + AluJo SINE Alu 1 308 -4 258 39 78 0 chr1 182527315 182527366 -99666298 + (TTTG)n Simple_repeat Simple_repeat 4 58 0 2015 106 0 4 chr1 182527366 182527639 -99666025 - AluSx SINE Alu -40 272 1 247 287 64 11 chr1 182528005 182528099 -99665565 + MIR SINE MIR 119 217 -45 1152 133 0 0 chr1 182528486 182528652 -99665012 + AluSg/x SINE Alu 132 297 -15 2088 121 0 7 chr1 182528676 182528965 -99664699 + AluSg1 SINE Alu 4 290 -19 2338 86 3 10 chr1 182528966 182529269 -99664395 + AluSg SINE Alu 1 301 -9 276 119 0 68 chr1 182529413 182529472 -99664192 + L1MB3 LINE L1 5282 5336 -844 2251 148 4 126 chr1 182529491 182529617 -99664047 + L1MB3 LINE L1 5317 5457 -714 2851 7 0 0 chr1 182529617 182529922 -99663742 + AluYa5 SINE Alu 1 305 -6 2251 148 4 126 chr1 182529922 182530015 -99663649 + L1MB3 LINE L1 5457 5560 -611 2294 111 0 7 chr1 182530015 182530322 -99663342 + AluSq SINE Alu 1 305 -8 2251 148 4 126 chr1 182530322 182530437 -99663227 + L1MB3 LINE L1 5560 5566 -605 1413 205 0 46 chr1 182530437 182530744 -99662920 + AluJo SINE Alu 1 293 -19 2251 148 4 126 chr1 182530744 182530940 -99662724 + L1MB3 LINE L1 5566 5784 -387 353 140 0 0 chr1 182530942 182530992 -99662672 + MER57A LTR ERV1 295 344 -59 23 0 0 0 chr1 182530997 182531020 -99662644 + AT_rich Low_complexity Low_complexity 1 23 0 746 210 0 0 chr1 182531022 182531146 -99662518 - FLAM_C SINE Alu -18 125 2 1101 143 101 14 chr1 182531163 182531380 -99662284 + L1MB3 LINE L1 5774 6009 -174 2751 110 3 5 chr1 182531389 182531763 -99661901 - L1PB3 LINE L1 0 6154 5782 351 214 111 24 chr1 182532585 182532711 -99660953 - MIR3 SINE MIR -34 174 38 2201 100 10 0 chr1 182532853 182533152 -99660512 - AluSp SINE Alu -11 302 1 246 262 190 42 chr1 182533748 182533892 -99659772 + MIR SINE MIR 24 187 -66 7069 56 2 4 chr1 182534661 182535487 -99658177 - LTR5 LTR ERVK 0 969 145 4904 189 11 1 chr1 182535759 182536702 -99656962 - L1P LINE L1 -869 5277 4326 2228 107 7 0 chr1 182536707 182537006 -99656658 - AluSx SINE Alu -11 301 2 863 229 30 30 chr1 182537532 182537733 -99655931 - MIR SINE MIR -3 259 59 2322 82 3 0 chr1 182537733 182538036 -99655628 - AluSp SINE Alu -8 305 2 1043 89 0 0 chr1 182538036 182538171 -99655493 - AluSq/x SINE Alu -178 135 1 475 231 8 58 chr1 182538314 182538435 -99655229 + MIR SINE MIR 47 161 -101 2022 124 3 19 chr1 182538473 182538787 -99654877 + AluSg SINE Alu 1 309 -1 346 188 29 0 chr1 182539039 182539108 -99654556 + L1MA9 LINE L1 6011 6081 -231 2114 98 0 0 chr1 182539118 182539392 -99654272 + AluSc SINE Alu 1 274 -35 234 0 0 0 chr1 182539394 182539420 -99654244 + (CA)n Simple_repeat Simple_repeat 1 26 0 288 183 113 14 chr1 182539428 182539499 -99654165 + L1MA9 LINE L1 6187 6264 -48 2062 100 0 4 chr1 182540132 182540412 -99653252 + AluSg SINE Alu 1 279 -31 231 61 0 0 chr1 182540417 182540450 -99653214 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1089 107 95 0 chr1 182541652 182541820 -99651844 - AluSp SINE Alu -129 184 1 344 179 120 109 chr1 182545446 182545630 -99648034 - MIR SINE MIR 0 262 77 2230 87 7 0 chr1 182545630 182545930 -99647734 + AluSg SINE Alu 1 302 -8 5033 46 3 7 chr1 182546156 182546804 -99646860 + SVA Other Other 784 1429 0 1991 135 0 0 chr1 182547457 182547760 -99645904 - AluSx SINE Alu -9 303 1 673 157 0 9 chr1 182547760 182547875 -99645789 + FLAM_C SINE Alu 27 140 -3 22 0 0 0 chr1 182547875 182547897 -99645767 + AT_rich Low_complexity Low_complexity 1 22 0 307 269 51 52 chr1 182547899 182548139 -99645525 - L1MC4 LINE L1 -1339 6983 1977 230 233 105 0 chr1 182548171 182548257 -99645407 - MER74B LTR ERVL 0 622 528 1567 73 0 56 chr1 182548286 182548520 -99645144 - AluSx SINE Alu -91 221 1 3125 52 5 17 chr1 182548773 182549179 -99644485 - SVA Other Other 0 1386 986 1825 144 17 8 chr1 182549359 182549721 -99643943 - SVA Other Other -1021 365 1 587 273 83 46 chr1 182550059 182550275 -99643389 + MLT1G LTR MaLR 69 292 -298 1084 252 148 26 chr1 182550439 182550877 -99642787 + MER77 LTR ERV1 214 665 -6 330 316 0 0 chr1 182550884 182550998 -99642666 + L1 LINE L1 3644 3757 -2389 249 146 24 0 chr1 182550999 182551040 -99642624 - MLT1A1 LTR MaLR -323 42 1 1146 254 7 18 chr1 182551096 182551376 -99642288 + MLT1C LTR MaLR 1 277 -190 810 154 0 54 chr1 182551376 182551525 -99642139 + FLAM_C SINE Alu 2 142 -1 561 250 114 27 chr1 182551526 182551710 -99641954 + MLT1C LTR MaLR 268 467 0 1079 294 80 56 chr1 182551834 182552020 -99641644 - L2 LINE L2 -1 3312 3132 804 136 24 0 chr1 182552020 182552145 -99641519 - FLAM_C SINE Alu -3 130 3 1079 294 80 56 chr1 182552145 182552720 -99640944 - L2 LINE L2 -181 3132 2515 2126 70 7 30 chr1 182552756 182553057 -99640607 - AluY SINE Alu -17 294 1 2035 122 7 7 chr1 182553063 182553367 -99640297 - AluSx SINE Alu -8 304 1 24 0 0 0 chr1 182553425 182553449 -99640215 + AT_rich Low_complexity Low_complexity 1 24 0 1922 123 14 0 chr1 182553449 182553614 -99640050 - AluSg SINE Alu -14 296 124 2394 70 0 0 chr1 182553614 182553916 -99639748 - AluY SINE Alu -9 302 1 1922 123 14 0 chr1 182553916 182554042 -99639622 - AluSg SINE Alu -186 124 1 1676 128 0 4 chr1 182554045 182554295 -99639369 - AluSx SINE Alu -17 295 47 437 198 86 9 chr1 182554428 182554544 -99639120 + MLT1G LTR MaLR 374 498 -7 2258 84 3 10 chr1 182555280 182555588 -99638076 - AluY SINE Alu -5 306 1 2035 122 7 7 chr1 182555594 182555898 -99637766 - AluSx SINE Alu -8 304 1 24 0 0 0 chr1 182555956 182555980 -99637684 + AT_rich Low_complexity Low_complexity 1 24 0 1922 123 14 0 chr1 182555980 182556145 -99637519 - AluSg SINE Alu -14 296 124 2394 70 0 0 chr1 182556145 182556447 -99637217 - AluY SINE Alu -9 302 1 1922 123 14 0 chr1 182556447 182556573 -99637091 - AluSg SINE Alu -186 124 1 1703 124 0 4 chr1 182556576 182556826 -99636838 - AluSx SINE Alu -17 295 47 721 146 0 83 chr1 182556827 182556971 -99636693 - AluJo SINE Alu -161 151 20 2165 173 42 8 chr1 182557020 182557402 -99636262 + MER57A LTR ERV1 1 395 -8 2355 111 132 24 chr1 182557403 182557773 -99635891 + MER57A-int LTR ERV1 1 410 -7127 1697 102 18 25 chr1 182557778 182558053 -99635611 - AluSx SINE Alu -38 274 2 1915 85 3 115 chr1 182558062 182558402 -99635262 - AluSp SINE Alu -11 302 1 2810 157 11 7 chr1 182558402 182558847 -99634817 + MER57A-int LTR ERV1 1140 1586 -4360 269 269 0 15 chr1 182558847 182558914 -99634750 + tRNA-Glu-GAG tRNA tRNA 7 72 -3 1516 161 36 22 chr1 182558926 182559200 -99634464 - MER50 LTR ERV1 -24 710 433 1258 154 64 0 chr1 182559183 182559358 -99634306 - MER50 LTR ERV1 -494 240 47 * 207 69 0 0 chr1 182559358 182559387 -99634277 + (TG)n Simple_repeat Simple_repeat 1 29 0 1258 154 64 0 chr1 182559387 182559431 -99634233 - MER50 LTR ERV1 -687 47 7 2039 115 61 80 chr1 182559440 182559823 -99633841 + MER57A-int LTR ERV1 1660 2049 -3897 1920 148 7 0 chr1 182559823 182560127 -99633537 - AluSq SINE Alu -7 306 1 2039 115 61 80 chr1 182560127 182560144 -99633520 + MER57A-int LTR ERV1 2049 2065 -3881 1954 134 0 3 chr1 182560144 182560435 -99633229 - AluSg SINE Alu -4 306 17 2039 115 61 80 chr1 182560435 182560559 -99633105 + MER57A-int LTR ERV1 2065 2279 -3667 327 128 0 0 chr1 182560559 182560606 -99633058 - THE1A LTR MaLR 0 355 309 526 168 51 66 chr1 182560708 182560823 -99632841 + MER57A-int LTR ERV1 2161 2275 -3671 2037 128 50 39 chr1 182560823 182561183 -99632481 - THE1B LTR MaLR 0 364 1 526 168 51 66 chr1 182561183 182561204 -99632460 + MER57A-int LTR ERV1 2275 2295 -3651 9770 93 25 32 chr1 182561284 182561732 -99631932 + MER57A-int LTR ERV1 3116 3566 -3971 2076 164 33 19 chr1 182561732 182561796 -99631868 - THE1B LTR MaLR 0 364 302 1957 137 20 3 chr1 182561796 182562095 -99631569 + AluSx SINE Alu 1 304 -8 2076 164 33 19 chr1 182562095 182562389 -99631275 - THE1B LTR MaLR -62 302 1 10667 130 11 29 chr1 182562389 182563501 -99630163 - THE1B-int LTR MaLR 0 1580 504 1794 146 3 14 chr1 182563501 182563795 -99629869 - AluSx SINE Alu -21 291 1 10667 130 11 29 chr1 182563795 182564291 -99629373 - THE1B-int LTR MaLR -1076 504 1 2142 165 40 6 chr1 182564291 182564643 -99629021 - THE1B LTR MaLR 0 364 1 9770 93 25 32 chr1 182564643 182565496 -99628168 + MER57A-int LTR ERV1 3564 4422 -3115 3713 77 2 6 chr1 182565496 182565989 -99627675 + L1PA8 LINE L1 5681 6171 -1 9770 93 25 32 chr1 182565989 182566045 -99627619 + MER57A-int LTR ERV1 4422 4477 -3060 1917 138 17 0 chr1 182566045 182566343 -99627321 - AluSx SINE Alu -9 303 1 9770 93 25 32 chr1 182566343 182566510 -99627154 + MER57A-int LTR ERV1 4477 4633 -2904 1138 124 28 11 chr1 182566510 182566688 -99626976 + THE1B LTR MaLR 1 181 -183 1868 132 0 0 chr1 182566688 182566968 -99626696 + AluSg SINE Alu 26 305 -5 191 39 19 77 chr1 182566976 182567028 -99626636 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 1132 137 10 59 chr1 182567030 182567234 -99626430 + THE1B LTR MaLR 171 364 0 16568 90 79 87 chr1 182567234 182568881 -99624783 + MER57A-int LTR ERV1 4629 6288 -1249 1852 142 0 33 chr1 182568881 182569184 -99624480 + AluSx SINE Alu 1 293 -19 16568 90 79 87 chr1 182569184 182569959 -99623705 + MER57A-int LTR ERV1 6288 7025 -512 2014 146 0 0 chr1 182569959 182570268 -99623396 + AluJb SINE Alu 1 309 -3 16568 90 79 87 chr1 182570268 182570775 -99622889 + MER57A-int LTR ERV1 7025 7535 -2 2174 158 38 0 chr1 182570777 182571144 -99622520 + MER57A LTR ERV1 1 381 -22 6746 103 4 16 chr1 182571164 182572145 -99621519 - LTR5 LTR ERVK 0 969 1 1810 125 0 11 chr1 182572145 182572409 -99621255 + AluSg SINE Alu 14 274 -36 26 0 0 0 chr1 182572423 182572449 -99621215 + AT_rich Low_complexity Low_complexity 1 26 0 669 193 9 0 chr1 182572449 182572563 -99621101 - FLAM_A SINE Alu -18 115 1 1887 125 18 4 chr1 182572852 182573158 -99620506 - AluSx SINE Alu 0 310 1 25 31 0 0 chr1 182573158 182573190 -99620474 + AT_rich Low_complexity Low_complexity 1 32 0 311 243 126 9 chr1 182574526 182574637 -99619027 - MIR SINE MIR -50 212 89 2029 113 0 3 chr1 182574684 182574977 -99618687 - AluSg SINE Alu -18 292 1 696 163 149 7 chr1 182576013 182576154 -99617510 - LTR40b LTR ERVL 0 462 302 1692 231 93 42 chr1 182576196 182576699 -99616965 - REP3 LTR ERV -33 529 1 317 129 177 0 chr1 182576708 182576770 -99616894 - LTR40b LTR ERVL -245 217 145 677 210 35 14 chr1 182576856 182576999 -99616665 - LTR40a LTR ERVL -373 146 1 26 50 0 0 chr1 182578079 182578119 -99615545 + AT_rich Low_complexity Low_complexity 1 40 0 543 40 91 10 chr1 182578149 182578347 -99615317 + (TA)n Simple_repeat Simple_repeat 1 214 0 1873 113 3 41 chr1 182578347 182578638 -99615026 - AluSx SINE Alu -31 281 2 269 127 291 0 chr1 182578645 182578700 -99614964 - MER69A DNA AcHobo -47 130 60 613 211 30 36 chr1 182578736 182578902 -99614762 + FRAM SINE Alu 2 166 0 484 190 70 60 chr1 182578924 182579124 -99614540 - LTR37A LTR ERV1 0 426 225 2030 69 35 0 chr1 182579408 182579696 -99613968 - AluY SINE Alu -13 298 1 1915 193 70 27 chr1 182579807 182580247 -99613417 + LTR2B LTR ERV1 32 490 0 725 94 0 0 chr1 182580672 182580778 -99612886 - AluY SINE Alu 0 311 206 2007 60 89 3 chr1 182581082 182581364 -99612300 + AluY SINE Alu 1 306 -5 2147 156 28 6 chr1 182581544 182581904 -99611760 + MLT1B LTR MaLR 1 368 -22 717 121 36 79 chr1 182581953 182582093 -99611571 - FLAM_C SINE Alu -9 134 1 25 0 0 0 chr1 182582101 182582126 -99611538 + AT_rich Low_complexity Low_complexity 1 25 0 1836 140 3 0 chr1 182582128 182582413 -99611251 - AluSx SINE Alu -26 286 1 2001 120 0 46 chr1 182582588 182582913 -99610751 - AluSx SINE Alu -2 310 1 1468 189 25 14 chr1 182582944 182583229 -99610435 - AluJo SINE Alu -15 297 10 1077 118 134 11 chr1 182583328 182583515 -99610149 - MER34C LTR ERV1 -371 214 5 314 267 67 0 chr1 182583590 182583680 -99609984 - MER34 LTR ERV1 0 542 447 1601 171 7 10 chr1 182583686 182583984 -99609680 - AluJb SINE Alu -12 300 4 2006 114 0 26 chr1 182584086 182584394 -99609270 + AluSx SINE Alu 1 300 -12 415 172 0 0 chr1 182584497 182584561 -99609103 - AluS SINE Alu -247 66 3 619 285 174 46 chr1 182584589 182584838 -99608826 + L2 LINE L2 1325 1541 -1773 1412 149 52 59 chr1 182584838 182585127 -99608537 - AluJo SINE Alu -25 287 1 619 285 174 46 chr1 182585127 182585315 -99608349 + L2 LINE L2 1541 1818 -1496 464 315 27 38 chr1 182585653 182585718 -99607946 + L3 LINE CR1 785 849 -728 2132 77 28 0 chr1 182585718 182586003 -99607661 + AluSp SINE Alu 1 293 -20 464 315 27 38 chr1 182586003 182586121 -99607543 + L3 LINE CR1 849 966 -611 878 186 21 32 chr1 182586149 182586337 -99607327 - AluJo SINE Alu -3 309 124 24 0 0 0 chr1 182586337 182586361 -99607303 + AT_rich Low_complexity Low_complexity 1 24 0 788 167 8 0 chr1 182586363 182586495 -99607169 + AluJ SINE Alu 1 133 -169 271 109 0 36 chr1 182586501 182586556 -99607108 + (GAAA)n Simple_repeat Simple_repeat 2 54 0 1025 157 23 0 chr1 182586556 182586728 -99606936 + AluJ SINE Alu 129 304 -8 1352 59 12 0 chr1 182586728 182586898 -99606766 + AluSp SINE Alu 1 172 -141 444 189 16 122 chr1 182587009 182587187 -99606477 + MER67A LTR ERV1 295 485 -58 2144 103 0 7 chr1 182587187 182587487 -99606177 + AluSp SINE Alu 1 298 -15 444 189 16 122 chr1 182587487 182587541 -99606123 + MER67A LTR ERV1 485 543 0 621 229 96 33 chr1 182587948 182588043 -99605621 - L1MC4a LINE L1 -1643 6165 6077 2357 67 0 0 chr1 182588043 182588343 -99605321 - AluY SINE Alu -11 300 1 621 229 96 33 chr1 182588343 182588487 -99605177 - L1MC4a LINE L1 -1731 6077 5911 810 136 0 50 chr1 182588488 182588628 -99605036 - FLAM_C SINE Alu 0 133 1 1781 105 4 18 chr1 182588640 182588916 -99604748 - AluSp SINE Alu -2 311 40 532 100 0 0 chr1 182588917 182588987 -99604677 - AluS SINE Alu -242 70 1 2250 71 3 0 chr1 182589001 182589328 -99604336 - AluSp SINE Alu 0 328 1 439 250 54 38 chr1 182589329 182589513 -99604151 - L1ME2 LINE L1 -34 6130 5944 1900 142 33 0 chr1 182589514 182589816 -99603848 + AluJo SINE Alu 1 312 0 2095 89 21 0 chr1 182589840 182590121 -99603543 - AluSg SINE Alu -23 287 1 240 310 105 23 chr1 182590417 182590588 -99603076 + L2 LINE L2 3079 3263 -50 191 289 168 13 chr1 182590794 182590943 -99602721 + L2 LINE L2 2810 2981 -291 232 329 106 12 chr1 182591220 182591305 -99602359 + L2 LINE L2 3199 3291 -22 574 235 64 11 chr1 182591306 182591493 -99602171 - L1M4 LINE L1 -3354 2792 2596 275 120 0 20 chr1 182591498 182591548 -99602116 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 885 142 0 0 chr1 182591571 182591698 -99601966 - FLAM_C SINE Alu -6 127 1 903 266 23 13 chr1 182591702 182592007 -99601657 - L1M4 LINE L1 -3540 2606 2299 378 320 46 34 chr1 182592224 182592399 -99601265 + L2 LINE L2 884 1060 -2254 311 302 13 54 chr1 182592401 182592501 -99601163 + L1M3 LINE L1 4415 4509 -1637 2387 93 0 0 chr1 182592501 182592812 -99600852 + AluSx SINE Alu 1 311 -1 311 302 13 54 chr1 182592812 182592860 -99600804 + L1M3 LINE L1 4509 4557 -1589 622 139 0 0 chr1 182592950 182593036 -99600628 - MER30B DNA MER1_type 0 230 145 820 49 0 0 chr1 182593049 182593151 -99600513 - SVA Other Other -17 1369 1268 2021 85 14 0 chr1 182593151 182593434 -99600230 - LTR5 LTR ERVK -639 330 44 3804 71 7 21 chr1 182593554 182594130 -99599534 - SVA Other Other -806 580 13 288 0 0 0 chr1 182594160 182594192 -99599472 + (TG)n Simple_repeat Simple_repeat 1 32 0 1625 155 0 4 chr1 182594192 182594450 -99599214 - AluSq SINE Alu -56 257 1 667 61 0 0 chr1 182594450 182594532 -99599132 - MER30B DNA MER1_type -108 82 1 722 195 0 8 chr1 182594548 182594676 -99598988 + FLAM_A SINE Alu 1 127 -6 2041 113 17 7 chr1 182594807 182595109 -99598555 + AluSp SINE Alu 1 305 -8 2247 99 0 0 chr1 182595109 182595413 -99598251 + AluSg SINE Alu 1 304 -6 1309 87 0 0 chr1 182595413 182595586 -99598078 + AluY SINE Alu 133 305 -6 2755 104 0 0 chr1 182595619 182595983 -99597681 + THE1B LTR MaLR 1 364 0 365 261 56 53 chr1 182595989 182596287 -99597377 + L1M3 LINE L1 5063 5358 -813 2180 107 0 7 chr1 182596287 182596587 -99597077 - AluSx SINE Alu -12 300 3 365 261 56 53 chr1 182596587 182596646 -99597018 + L1M3 LINE L1 5358 5432 -739 2106 98 0 55 chr1 182596646 182596833 -99596831 - AluSx SINE Alu -3 309 146 2285 76 3 0 chr1 182596833 182597134 -99596530 - AluY SINE Alu -9 302 1 2106 98 0 55 chr1 182597134 182597273 -99596391 - AluSx SINE Alu -166 146 1 365 261 56 53 chr1 182597273 182597296 -99596368 + L1M3 LINE L1 5432 5453 -718 24 0 0 0 chr1 182597375 182597399 -99596265 + AT_rich Low_complexity Low_complexity 1 24 0 357 253 101 28 chr1 182597455 182597633 -99596031 - L1MC4a LINE L1 -1763 6045 5855 1278 187 10 73 chr1 182597635 182597723 -99595941 - AluJo SINE Alu 0 305 213 1843 111 3 92 chr1 182597723 182597899 -99595765 - AluSx SINE Alu -16 296 106 189 0 0 0 chr1 182597899 182597920 -99595744 + (TA)n Simple_repeat Simple_repeat 2 22 0 2221 65 3 10 chr1 182597920 182598213 -99595451 - AluY SINE Alu -20 291 1 1843 111 3 92 chr1 182598213 182598224 -99595440 - AluSx SINE Alu -205 107 97 2132 84 16 29 chr1 182598224 182598535 -99595129 - AluY SINE Alu -4 307 1 1843 111 3 92 chr1 182598535 182598670 -99594994 - AluSx SINE Alu -215 97 1 1278 187 10 73 chr1 182598670 182598905 -99594759 - AluJo SINE Alu -92 213 1 241 306 81 0 chr1 182599907 182599969 -99593695 - L2 LINE L2 0 3272 3206 215 289 0 0 chr1 182600152 182600197 -99593467 + polypyrimidine Low_complexity Low_complexity 2 46 0 1305 131 0 0 chr1 182600202 182600401 -99593263 + L1PA15 LINE L1 5967 6165 0 2026 123 0 3 chr1 182600403 182600731 -99592933 + AluSq SINE Alu 1 327 0 738 163 0 41 chr1 182600887 182601010 -99592654 - FLAM_C SINE Alu -15 118 1 199 210 0 123 chr1 182601212 182601293 -99592371 - L2 LINE L2 -20 3293 3223 2125 114 0 19 chr1 182601471 182601786 -99591878 - AluSx SINE Alu -3 309 1 1752 205 60 74 chr1 182602519 182603100 -99590564 - L1MC4 LINE L1 0 8042 7470 1932 124 0 7 chr1 182603128 182603419 -99590245 - AluSx SINE Alu -23 289 1 1607 175 0 10 chr1 182603427 182603718 -99589946 - AluJb SINE Alu -24 288 1 30 27 0 0 chr1 182603727 182603764 -99589900 + AT_rich Low_complexity Low_complexity 1 37 0 517 158 0 0 chr1 182603789 182603865 -99589799 - L1MC4 LINE L1 -562 7480 7405 830 272 155 54 chr1 182603921 182604477 -99589187 + L2 LINE L2 2708 3301 -12 242 267 50 0 chr1 182604640 182604700 -99588964 + L2 LINE L2 3251 3313 0 1884 158 3 3 chr1 182605267 182605578 -99588086 - AluJo SINE Alu -1 311 1 1185 224 168 28 chr1 182605605 182606141 -99587523 - L1ME3A LINE L1 -9 6161 5514 245 316 0 35 chr1 182606552 182606666 -99586998 + GA-rich Low_complexity Low_complexity 2 111 0 276 300 11 11 chr1 182606926 182607016 -99586648 + AluSg/x SINE Alu 206 295 -5 200 300 159 37 chr1 182607450 182607616 -99586048 + MIR3 SINE MIR 4 189 -73 2179 111 0 0 chr1 182608097 182608395 -99585269 + AluSx SINE Alu 1 298 -14 1893 144 23 3 chr1 182608402 182608708 -99584956 + AluSq SINE Alu 2 313 0 408 236 27 47 chr1 182609220 182609374 -99584290 - MER77 LTR ERV1 -7 598 487 1998 209 50 48 chr1 182609460 182609938 -99583726 - MER77 LTR ERV1 -86 519 41 2705 80 8 0 chr1 182611036 182611388 -99582276 + THE1A LTR MaLR 1 355 0 325 216 0 0 chr1 182611785 182611836 -99581828 + AluJ/monomer SINE Alu 1 51 -251 849 292 55 25 chr1 182611851 182612323 -99581341 + L1ME3 LINE L1 5466 5951 -211 506 207 110 67 chr1 182612673 182612837 -99580827 + MLT1I LTR MaLR 4 174 -235 207 211 0 0 chr1 182613242 182613264 -99580400 + (CA)n Simple_repeat Simple_repeat 2 23 -30 1625 168 17 14 chr1 182613264 182613561 -99580103 + AluJb SINE Alu 1 298 -14 207 211 0 0 chr1 182613561 182613590 -99580074 + (CA)n Simple_repeat Simple_repeat 22 53 0 1611 152 20 135 chr1 182613630 182614207 -99579457 - L1MB3 LINE L1 -74 6109 5613 2137 118 0 0 chr1 182614207 182614503 -99579161 - AluSx SINE Alu -16 296 1 1611 152 20 135 chr1 182614503 182614565 -99579099 - L1MB3 LINE L1 -570 5613 5545 566 182 0 0 chr1 182614712 182614811 -99578853 + MSTA LTR MaLR 330 428 0 6626 209 33 72 chr1 182614811 182615377 -99578287 - L1MB3 LINE L1 -622 5549 4962 2302 94 0 0 chr1 182615377 182615676 -99577988 - AluSg SINE Alu -11 299 1 6626 209 33 72 chr1 182615676 182616850 -99576814 - L1MB3 LINE L1 -1209 4962 3743 815 153 8 0 chr1 182616850 182616981 -99576683 + AluSq/x SINE Alu 2 133 -179 6626 209 33 72 chr1 182616981 182616996 -99576668 - L1MB3 LINE L1 -2428 3743 3729 294 95 0 0 chr1 182616996 182617038 -99576626 + (TA)n Simple_repeat Simple_repeat 2 43 0 6626 209 33 72 chr1 182617038 182617446 -99576218 - L1MB3 LINE L1 -2442 3729 3352 1907 146 0 0 chr1 182617446 182617734 -99575930 + AluSx SINE Alu 1 288 -24 481 276 46 29 chr1 182617738 182617912 -99575752 - MIR SINE MIR 0 262 86 251 285 80 104 chr1 182618041 182618290 -99575374 + L2 LINE L2 3026 3268 -4 207 270 14 0 chr1 182618521 182618595 -99575069 + GA-rich Low_complexity Low_complexity 3 77 0 1999 113 7 0 chr1 182618676 182618960 -99574704 - AluSg SINE Alu -20 290 5 360 236 0 0 chr1 182618988 182619077 -99574587 + CT-rich Low_complexity Low_complexity 3 91 0 221 306 168 57 chr1 182620111 182620212 -99573452 + L2 LINE L2 1897 1985 -1329 1937 129 3 0 chr1 182620212 182620499 -99573165 + AluSx SINE Alu 13 300 -12 221 306 168 57 chr1 182620499 182620874 -99572790 + L2 LINE L2 1985 2426 -888 2434 139 23 39 chr1 182620932 182621131 -99572533 + MSTA LTR MaLR 1 202 -226 1962 137 3 0 chr1 182621131 182621424 -99572240 + AluSp SINE Alu 1 294 -19 2434 139 23 39 chr1 182621424 182621620 -99572044 + MSTA LTR MaLR 202 391 -37 1868 146 10 3 chr1 182621620 182621928 -99571736 - AluJb SINE Alu -2 310 1 2434 139 23 39 chr1 182621928 182621963 -99571701 + MSTA LTR MaLR 391 425 -3 266 200 38 0 chr1 182622431 182622511 -99571153 + (CA)n Simple_repeat Simple_repeat 1 83 0 2104 108 3 0 chr1 182623268 182623563 -99570101 + AluSq SINE Alu 1 296 -17 446 309 74 0 chr1 182623564 182623726 -99569938 + MIR SINE MIR 32 205 -57 1963 134 23 0 chr1 182624771 182625070 -99568594 + AluSx SINE Alu 1 306 -6 2556 184 21 57 chr1 182625669 182626102 -99567562 + L1MB4 LINE L1 5587 5993 -187 1863 164 7 0 chr1 182626102 182626412 -99567252 - AluSx SINE Alu 0 312 1 2556 184 21 57 chr1 182626412 182626588 -99567076 + L1MB4 LINE L1 5993 6174 -6 359 311 72 53 chr1 182627276 182627485 -99566179 - L2 LINE L2 -217 3055 2843 1011 205 50 43 chr1 182628745 182629003 -99564661 + AluJo SINE Alu 1 260 -52 659 123 0 47 chr1 182629440 182629546 -99564118 - AluSg/x SINE Alu -16 296 196 279 155 36 48 chr1 182629554 182629574 -99564090 + L1MB2 LINE L1 6086 6105 -66 2003 122 10 0 chr1 182629574 182629869 -99563795 + AluSx SINE Alu 10 307 -5 279 155 36 48 chr1 182629869 182629932 -99563732 + L1MB2 LINE L1 6105 6168 -3 2124 125 0 10 chr1 182629958 182630271 -99563393 + AluSq SINE Alu 1 310 -3 825 198 6 38 chr1 182630294 182630451 -99563213 - FRAM SINE Alu -14 152 1 1542 132 64 112 chr1 182630505 182630688 -99562976 + LTR8A LTR ERV1 386 545 -182 2475 61 0 0 chr1 182630688 182630998 -99562666 + AluY SINE Alu 2 311 0 1542 132 64 112 chr1 182630998 182631171 -99562493 + LTR8A LTR ERV1 545 725 -2 460 157 0 0 chr1 182631199 182631269 -99562395 - Tigger5 DNA MER2_type 0 2323 2254 2409 73 3 0 chr1 182631269 182631572 -99562092 + AluSp SINE Alu 1 304 -9 341 250 0 0 chr1 182631590 182631662 -99562002 + Tigger5 DNA MER2_type 2249 2320 -3 302 214 0 0 chr1 182631663 182631719 -99561945 - Tigger5 DNA MER2_type -2246 77 22 280 288 68 54 chr1 182631731 182631936 -99561728 - MLT1K LTR MaLR -29 559 352 452 315 19 0 chr1 182631956 182632064 -99561600 - MER115 DNA AcHobo -582 111 2 2280 69 7 10 chr1 182632070 182632375 -99561289 + AluY SINE Alu 1 304 -7 2086 97 3 3 chr1 182632478 182632767 -99560897 + AluSq SINE Alu 1 289 -24 958 153 11 17 chr1 182632785 182632962 -99560702 + AluSg/x SINE Alu 128 303 -7 493 322 59 51 chr1 182633131 182633367 -99560297 + L3 LINE CR1 644 881 -696 364 345 70 0 chr1 182633420 182633591 -99560073 + L3 LINE CR1 1077 1259 -318 2314 94 0 3 chr1 182633924 182634232 -99559432 - AluSg SINE Alu -3 307 1 498 201 187 0 chr1 182634232 182634366 -99559298 - MER58B DNA MER1_type 0 341 183 742 138 89 0 chr1 182634468 182634591 -99559073 + AluSc SINE Alu 167 300 -9 2042 92 17 3 chr1 182634664 182634958 -99558706 - AluSx SINE Alu -14 298 1 180 0 0 0 chr1 182634983 182635003 -99558661 + (A)n Simple_repeat Simple_repeat 1 20 0 2430 71 0 0 chr1 182635020 182635328 -99558336 - AluY SINE Alu 0 311 4 2032 117 13 3 chr1 182635546 182635845 -99557819 - AluSx SINE Alu -10 302 1 264 100 0 0 chr1 182635920 182635960 -99557704 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2294 82 0 10 chr1 182636289 182636595 -99557069 - AluSq SINE Alu -10 303 1 351 363 65 63 chr1 182636967 182637413 -99556251 + L2 LINE L2 2811 3257 -15 293 224 0 40 chr1 182637416 182637492 -99556172 + AluJo SINE Alu 86 158 -144 299 137 166 177 chr1 182637565 182637679 -99555985 + MLT1G1 LTR MaLR 1 114 -481 1670 147 98 0 chr1 182637679 182637944 -99555720 + AluSx SINE Alu 1 291 -21 299 137 166 177 chr1 182637944 182638004 -99555660 + MLT1G1 LTR MaLR 114 173 -422 268 278 49 134 chr1 182638022 182638157 -99555507 - MIR SINE MIR -54 208 98 2198 112 7 0 chr1 182638157 182638451 -99555213 + AluSg SINE Alu 1 296 -14 268 278 49 134 chr1 182638451 182638538 -99555126 - MIR SINE MIR -164 98 5 2166 113 41 0 chr1 182638697 182638989 -99554675 + AluSx SINE Alu 1 304 -8 381 43 0 0 chr1 182639808 182639855 -99553809 + (A)n Simple_repeat Simple_repeat 1 47 0 2446 101 0 0 chr1 182641521 182641827 -99551837 + AluSx SINE Alu 1 306 -6 216 0 0 0 chr1 182642488 182642512 -99551152 + (GA)n Simple_repeat Simple_repeat 1 24 0 535 242 160 28 chr1 182643544 182643766 -99549898 - MIR SINE MIR 0 262 1 2459 79 0 10 chr1 182644162 182644466 -99549198 - AluSg SINE Alu -9 301 1 2390 101 10 3 chr1 182644477 182644785 -99548879 - AluSx SINE Alu -2 310 1 613 276 26 68 chr1 182646990 182647255 -99546409 + MIR SINE MIR 3 256 -6 207 100 0 0 chr1 182649176 182649206 -99544458 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 394 292 98 8 chr1 182650806 182650970 -99542694 + MIR3 SINE MIR 17 197 -11 203 303 79 0 chr1 182650970 182651046 -99542618 + MIR SINE MIR 97 178 -84 2405 101 0 0 chr1 182651073 182651371 -99542293 + AluSx SINE Alu 1 298 -14 2158 115 16 13 chr1 182652768 182652935 -99540729 - AluSq SINE Alu -8 305 135 2588 64 3 13 chr1 182652935 182653247 -99540417 - AluSp SINE Alu -4 309 1 2158 115 16 13 chr1 182653247 182653383 -99540281 - AluSq SINE Alu -178 135 1 1535 105 8 59 chr1 182653386 182653574 -99540090 - AluSg/x SINE Alu -1 309 134 2328 110 3 0 chr1 182653574 182653883 -99539781 - AluSp SINE Alu -2 311 2 1535 105 8 59 chr1 182653883 182653933 -99539731 - AluSg/x SINE Alu -176 134 83 801 153 0 15 chr1 182653935 182654066 -99539598 - FLAM_C SINE Alu -4 129 1 1954 141 46 0 chr1 182654098 182654381 -99539283 + AluSx SINE Alu 1 296 -16 851 202 6 45 chr1 182654381 182654559 -99539105 + AluJo/FRAM SINE Alu 134 304 -8 31 58 0 0 chr1 182654594 182654646 -99539018 + AT_rich Low_complexity Low_complexity 1 52 0 1977 141 3 0 chr1 182654699 182655013 -99538651 + AluSx SINE Alu 1 315 0 195 184 0 0 chr1 182655078 182655116 -99538548 + CT-rich Low_complexity Low_complexity 1 38 0 1414 158 58 42 chr1 182655142 182655264 -99538400 - AluJo SINE Alu -39 273 154 1704 109 0 5 chr1 182655264 182655484 -99538180 - AluSx SINE Alu -93 219 1 1414 158 58 42 chr1 182655484 182655620 -99538044 - AluJo SINE Alu -158 154 11 2178 109 3 7 chr1 182655666 182655959 -99537705 + AluSx SINE Alu 1 292 -20 817 247 11 5 chr1 182655985 182656171 -99537493 + LTR16A LTR ERVL 258 444 -6 894 220 20 78 chr1 182656647 182656694 -99536970 + MIR SINE MIR 22 70 -192 2262 93 17 23 chr1 182656694 182656995 -99536669 + AluSq SINE Alu 1 299 -14 2479 86 3 0 chr1 182656996 182657299 -99536365 + AluSp SINE Alu 2 305 -8 894 220 20 78 chr1 182657299 182657504 -99536160 + MIR SINE MIR 69 261 -1 2364 82 0 23 chr1 182658025 182658329 -99535335 + AluY SINE Alu 1 297 -14 492 137 0 0 chr1 182658494 182658567 -99535097 - AluJ/FLAM SINE Alu -238 74 2 2189 125 3 0 chr1 182658771 182659068 -99534596 + AluSq SINE Alu 1 298 -15 305 339 17 9 chr1 182659084 182659199 -99534465 + L1M4 LINE L1 4904 5019 -1127 2332 107 0 0 chr1 182659210 182659500 -99534164 + AluSg SINE Alu 1 290 -20 373 231 133 49 chr1 182660032 182660175 -99533489 - L2 LINE L2 -1 3312 3158 587 190 41 0 chr1 182660884 182661005 -99532659 + FLAM_C SINE Alu 6 131 -12 10465 134 10 33 chr1 182661119 182662899 -99530765 - L1P LINE L1 -4406 1740 3 2291 98 3 7 chr1 182663122 182663418 -99530246 - AluSq SINE Alu -18 295 1 897 67 25 8 chr1 182663537 182663657 -99530007 - AluSc SINE Alu -187 122 1 2382 106 0 0 chr1 182663755 182664056 -99529608 - AluSg SINE Alu -9 301 1 1905 179 10 0 chr1 182664383 182664691 -99528973 - AluSx SINE Alu -1 311 1 398 91 0 0 chr1 182664730 182664785 -99528879 - U6 snRNA snRNA -51 56 2 613 140 0 0 chr1 182665257 182665350 -99528314 - AluS SINE Alu -218 94 2 429 305 78 14 chr1 182665778 182665919 -99527745 + L1M4 LINE L1 5010 5159 -987 1901 118 39 52 chr1 182665927 182666232 -99527432 + AluSp SINE Alu 1 301 -12 2509 72 0 7 chr1 182666332 182666639 -99527025 + AluY SINE Alu 1 305 -6 24 32 0 0 chr1 182666652 182666683 -99526981 + AT_rich Low_complexity Low_complexity 1 31 0 4440 177 30 56 chr1 182666806 182667801 -99525863 - LTR5 LTR ERVK 0 969 1 1374 80 11 6 chr1 182668530 182668706 -99524958 - AluSp SINE Alu -12 301 125 6512 125 16 14 chr1 182668727 182669694 -99523970 - LTR5 LTR ERVK 0 969 1 382 313 0 8 chr1 182669741 182669872 -99523792 + MIR SINE MIR 133 262 0 835 155 0 0 chr1 182670608 182670737 -99522927 + FLAM_A SINE Alu 3 131 -2 233 268 21 0 chr1 182671242 182671339 -99522325 + (CA)n Simple_repeat Simple_repeat 2 100 0 396 0 0 0 chr1 182673504 182673548 -99520116 + (TC)n Simple_repeat Simple_repeat 1 44 0 2114 113 10 20 chr1 182673824 182674125 -99519539 + AluSx SINE Alu 1 298 -14 1923 163 3 3 chr1 182675252 182675547 -99518117 + AluJo SINE Alu 1 295 -17 2045 116 25 4 chr1 182675549 182675999 -99517665 + AluSx SINE Alu 1 456 0 986 194 36 14 chr1 182676922 182677201 -99516463 + L1M4 LINE L1 5030 5314 -832 1223 105 6 0 chr1 182677201 182677363 -99516301 - AluSg/x SINE Alu -16 294 132 541 118 0 49 chr1 182677415 182677517 -99516147 + L1M LINE L1 5317 5413 -771 1117 183 0 0 chr1 182677520 182677706 -99515958 + AluJb SINE Alu 123 308 -4 2083 121 0 17 chr1 182677775 182677912 -99515752 + AluSx SINE Alu 1 139 -171 2353 92 3 0 chr1 182677912 182678205 -99515459 + AluSp SINE Alu 1 294 -19 2083 121 0 17 chr1 182678205 182678382 -99515282 + AluSx SINE Alu 139 310 0 2183 111 7 3 chr1 182678386 182678674 -99514990 + AluSx SINE Alu 1 289 -23 504 188 18 14 chr1 182679379 182679524 -99514140 - MIR SINE MIR -50 212 68 236 278 42 14 chr1 182679587 182679659 -99514005 - L2 LINE L2 -77 3195 3122 193 255 0 0 chr1 182679881 182679932 -99513732 - L2 LINE L2 -308 2964 2914 342 244 93 47 chr1 182680983 182681176 -99512488 + L2 LINE L2 2905 3106 -166 2005 119 11 0 chr1 182681361 182681639 -99512025 + AluSq SINE Alu 1 281 -32 465 314 33 94 chr1 182682127 182682594 -99511070 - L1 LINE L1 -2726 3420 2898 1928 143 52 3 chr1 182683503 182683790 -99509874 - AluJb SINE Alu -11 301 1 389 255 140 13 chr1 182684764 182684921 -99508743 - MIR3 SINE MIR -2 206 30 185 289 82 62 chr1 182685261 182685358 -99508306 + L2 LINE L2 3169 3267 -5 412 259 46 8 chr1 182685588 182685719 -99507945 + MIR3 SINE MIR 67 202 -6 216 163 0 0 chr1 182686926 182686969 -99506695 + (TG)n Simple_repeat Simple_repeat 2 44 0 12849 140 5 3 chr1 182887383 182889374 -99304290 - HUERS-P3 LTR ERV1 -3780 5139 3146 289 240 10 120 chr1 182889766 182889866 -99303798 - MIR SINE MIR -42 220 132 27 0 0 0 chr1 182889866 182889893 -99303771 + AT_rich Low_complexity Low_complexity 1 27 0 242 177 16 32 chr1 182889906 182889968 -99303696 - AluSc SINE Alu -165 134 74 262 303 51 20 chr1 182889993 182890188 -99303476 - L1ME LINE L1 -392 5729 5529 2577 42 19 10 chr1 182890537 182890844 -99302820 - AluY SINE Alu -1 310 1 288 70 0 0 chr1 182892816 182892866 -99300798 + (TG)n Simple_repeat Simple_repeat 1 93 0 288 70 0 0 chr1 182892866 182892909 -99300755 + (TG)n Simple_repeat Simple_repeat 1 43 0 237 65 0 0 chr1 182893552 182893583 -99300081 + (GA)n Simple_repeat Simple_repeat 1 31 0 518 108 0 0 chr1 182893962 182894036 -99299628 - tRNA-Gly-GGC tRNA tRNA 0 74 1 4541 120 19 78 chr1 182894307 182895180 -99298484 - LTR12 LTR ERV1 0 826 5 4143 136 56 10 chr1 182895186 182896339 -99297325 - HUERS-P3 LTR ERV1 0 8399 504 372 145 0 0 chr1 182896335 182896397 -99297267 - HUERS-P3 LTR ERV1 -835 7564 7503 * 534 161 57 31 chr1 182896395 182896587 -99297077 - HUERS-P3 LTR ERV1 -7726 900 704 27731 107 20 10 chr1 182896587 182901393 -99292271 - HUERS-P3 LTR ERV1 -3419 4980 40 1456 189 4 25 chr1 182901362 182901792 -99291872 - pTR5 LTR ERV1 -237 477 173 * 519 17 0 0 chr1 182902122 182902182 -99291482 + (TTTC)n Simple_repeat Simple_repeat 1 60 0 573 84 0 0 chr1 182903421 182903504 -99290160 - tRNA-Leu-CTG tRNA tRNA -3 83 1 6385 180 22 23 chr1 182903845 182906279 -99287385 - HUERS-P3 LTR ERV1 -5671 1747 1 1267 225 17 94 chr1 182906279 182906960 -99286704 - LTR9 LTR ERV1 0 779 1 204 163 0 0 chr1 182906978 182907021 -99286643 + (CCA)n Simple_repeat Simple_repeat 3 45 0 634 232 21 2 chr1 182907365 182907531 -99286133 - L1MA4A LINE L1 -32 6271 6099 659 200 82 91 chr1 182907691 182907911 -99285753 + HERVK14 LTR ERVK 55 272 -6971 412 264 0 0 chr1 182907985 182908072 -99285592 + HERVK14 LTR ERVK 594 680 -6563 * 4537 205 62 2 chr1 182908060 182908993 -99284671 + HERVK14 LTR ERVK 1321 2309 -4934 2486 124 32 35 chr1 182908992 182909513 -99284151 + HERVK14 LTR ERVK 2995 5579 -366 * 1330 129 19 5 chr1 182909515 182909543 -99284121 + PRIMA41-int LTR ERV1 7545 7756 0 1358 72 22 0 chr1 182909543 182909724 -99283940 + HERVK14 LTR ERVK 5575 5759 -186 357 161 0 16 chr1 182909724 182909786 -99283878 + MER41C LTR ERV1 1 61 -493 527 32 0 0 chr1 182909786 182909849 -99283815 + HERVK14 LTR ERVK 5822 5884 -61 1178 189 0 43 chr1 182910043 182910429 -99283235 - L1M2 LINE L1 -688 5609 5254 867 265 20 52 chr1 182911133 182911439 -99282225 + MLT1C LTR MaLR 170 465 -2 1039 248 31 14 chr1 182911831 182912117 -99281547 - LTR43 LTR ERV1 -137 465 175 26 50 0 0 chr1 182912358 182912398 -99281266 + GC_rich Low_complexity Low_complexity 1 40 0 717 0 0 0 chr1 182912590 182912673 -99280991 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 483 18 0 0 chr1 182913911 182913967 -99279697 + (GAAA)n Simple_repeat Simple_repeat 1 56 0 563 40 0 0 chr1 182914350 182914424 -99279240 + tRNA-Gly-GGC tRNA tRNA 1 74 0 270 116 0 0 chr1 182914804 182914847 -99278817 + (TC)n Simple_repeat Simple_repeat 1 43 0 243 133 0 0 chr1 182915490 182915535 -99278129 + (CA)n Simple_repeat Simple_repeat 1 45 0 251 104 31 21 chr1 182915535 182915631 -99278033 - HERV17 LTR ERV1 -7803 823 727 2675 78 5 2 chr1 182916635 182917056 -99276608 + MER11A LTR ERVK 2 520 -746 2052 224 7 35 chr1 182917058 182917608 -99276056 + L1MA4A LINE L1 5737 6271 -32 606 0 0 0 chr1 182918261 182918333 -99275331 - tRNA-Glu-GAG tRNA tRNA -3 72 1 612 14 0 0 chr1 182918618 182918690 -99274974 - tRNA-Gly-GGA tRNA tRNA -3 72 1 43 85 0 20 chr1 182918694 182918847 -99274817 + GC_rich Low_complexity Low_complexity 1 150 0 625 13 0 0 chr1 182919273 182919348 -99274316 - tRNA-Asp-GAC tRNA tRNA 0 75 1 26 50 0 0 chr1 182919751 182919791 -99273873 + GC_rich Low_complexity Low_complexity 1 40 0 664 48 0 0 chr1 182919982 182920065 -99273599 + tRNA-Leu-CTG tRNA tRNA 1 83 -3 296 235 0 0 chr1 182921153 182921221 -99272443 - LTR60 LTR ERV1 -518 68 1 336 311 111 17 chr1 182921222 182921402 -99272262 + L1ME LINE L1 5555 5751 -370 1365 239 47 108 chr1 182921495 182922072 -99271592 + MLT1F LTR MaLR 1 542 0 1697 195 113 25 chr1 182922286 182922686 -99270978 + MLT1C LTR MaLR 33 467 0 32 67 0 0 chr1 182922691 182922751 -99270913 + AT_rich Low_complexity Low_complexity 1 60 0 917 20 0 0 chr1 182923001 182923103 -99270561 - AluY SINE Alu -12 299 198 28 0 0 0 chr1 182923249 182923277 -99270387 + AT_rich Low_complexity Low_complexity 1 28 0 293 235 0 15 chr1 182923995 182924063 -99269601 + MIR3 SINE MIR 90 156 -52 1206 164 41 31 chr1 182924752 182925069 -99268595 - MER33 DNA MER1_type 0 324 5 461 291 122 12 chr1 182925310 182925482 -99268182 + L2 LINE L2 8 198 -3116 444 238 138 25 chr1 182925483 182925643 -99268021 + MLT1H LTR MaLR 372 549 0 1404 258 107 29 chr1 182925644 182925718 -99267946 + L2 LINE L2 2438 2505 -808 1964 164 0 6 chr1 182925718 182926029 -99267635 - AluJo SINE Alu -1 311 3 1404 258 107 29 chr1 182926029 182926771 -99266893 + L2 LINE L2 2505 3312 -1 468 175 0 0 chr1 182927624 182927721 -99265943 + (CA)n Simple_repeat Simple_repeat 2 98 0 2533 31 21 3 chr1 182928183 182928473 -99265191 - AluY SINE Alu -16 295 1 27 29 0 0 chr1 182929471 182929505 -99264159 + AT_rich Low_complexity Low_complexity 1 34 0 204 40 0 0 chr1 182929887 182929912 -99263752 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 924 188 0 0 chr1 182930140 182930289 -99263375 + FRAM SINE Alu 1 149 -27 4581 165 51 56 chr1 182930614 182931690 -99261974 + MER11C LTR ERVK 1 1071 0 2151 110 7 10 chr1 182932141 182932449 -99261215 + AluSx SINE Alu 1 307 -5 1252 121 0 16 chr1 182932449 182932631 -99261033 + AluSg/x SINE Alu 134 312 0 282 246 33 16 chr1 182932659 182932781 -99260883 + (TA)n Simple_repeat Simple_repeat 2 125 0 2089 70 0 20 chr1 182932936 182933217 -99260447 - L1PA5 LINE L1 -193 5961 5685 1268 66 10 45 chr1 182933217 182933415 -99260249 + L1PA5 LINE L1 5964 6154 0 2089 70 0 20 chr1 182933415 182933433 -99260231 - L1PA5 LINE L1 -469 5685 5668 25 0 0 0 chr1 182933533 182933558 -99260106 + AT_rich Low_complexity Low_complexity 1 25 0 474 110 0 0 chr1 182934163 182934236 -99259428 + tRNA-Asn-AAC tRNA tRNA 1 73 -4 297 266 70 23 chr1 182935171 182935299 -99258365 + L2 LINE L2 3173 3306 -7 232 354 0 13 chr1 182935706 182935785 -99257879 - L3 LINE CR1 -1078 499 422 471 228 16 0 chr1 182937494 182937621 -99256043 - L1MC4 LINE L1 0 8042 7914 538 189 70 103 chr1 182937950 182938135 -99255529 + MIR SINE MIR 84 262 0 338 308 87 0 chr1 182938136 182938240 -99255424 - MIR SINE MIR -69 139 27 259 238 0 12 chr1 182939655 182939735 -99253929 + L1ME4a LINE L1 5815 5893 -228 276 250 78 17 chr1 182939756 182939872 -99253792 + L1ME4a LINE L1 5957 6079 -42 253 315 114 38 chr1 182940237 182940421 -99253243 - L2 LINE L2 -4 3309 3112 2083 129 0 0 chr1 182940481 182940791 -99252873 + AluY SINE Alu 1 310 -1 1978 134 0 10 chr1 182941635 182941949 -99251715 + AluSx SINE Alu 1 311 -1 435 286 93 25 chr1 182943229 182943390 -99250274 - MIR3 SINE MIR -7 201 30 1549 147 11 36 chr1 182945514 182945793 -99247871 + AluJo SINE Alu 11 282 -30 284 233 17 0 chr1 182945876 182945936 -99247728 + CT-rich Low_complexity Low_complexity 5 65 0 246 299 28 47 chr1 182946185 182946292 -99247372 - L2 LINE L2 -296 2976 2872 363 269 134 0 chr1 182946394 182946513 -99247151 + MIR SINE MIR 95 229 -33 451 358 82 19 chr1 182946554 182946761 -99246903 + L2 LINE L2 3040 3259 -13 * 906 365 40 19 chr1 182946759 182947339 -99246325 - L2 LINE L2 -501 2813 2222 272 314 122 27 chr1 182947544 182947872 -99245792 - L2 LINE L2 -1135 2179 1821 1948 117 89 94 chr1 182948096 182948343 -99245321 + MLT1B LTR MaLR 1 247 -143 1263 128 5 15 chr1 182948343 182948547 -99245117 + L1PA13 LINE L1 5951 6152 -11 1948 117 89 94 chr1 182948547 182948691 -99244973 + MLT1B LTR MaLR 247 390 0 5064 89 0 6 chr1 182948972 182949633 -99244031 - LTR8 LTR ERV1 -34 657 1 433 316 86 81 chr1 182949640 182950184 -99243480 - L2 LINE L2 -1600 1714 1168 3944 187 66 24 chr1 182950464 182950510 -99243154 - MER21B LTR ERV1 -52 811 768 180 0 0 0 chr1 182950510 182950530 -99243134 + (CAAG)n Simple_repeat Simple_repeat 4 23 0 3944 187 66 24 chr1 182950530 182950565 -99243099 - MER21B LTR ERV1 -95 768 736 3435 126 19 13 chr1 182950565 182951089 -99242575 - MER1A DNA MER1_type 0 527 1 3944 187 66 24 chr1 182951089 182951760 -99241904 - MER21B LTR ERV1 -127 736 26 2184 191 36 28 chr1 182951760 182952230 -99241434 + LTR62 LTR ERVK 1 474 -245 602 255 48 7 chr1 182952350 182952495 -99241169 - MLT1G LTR MaLR -427 163 13 247 223 88 54 chr1 182952998 182953146 -99240518 + MLT1L LTR MaLR 128 280 -335 268 293 121 11 chr1 182953208 182953405 -99240259 + MLT1L LTR MaLR 363 606 -1 308 281 111 52 chr1 182953520 182953673 -99239991 + MIR3 SINE MIR 43 204 -4 2223 98 0 0 chr1 182953775 182954072 -99239592 - AluSx SINE Alu -15 297 1 569 200 0 19 chr1 182954114 182954219 -99239445 - FLAM_A SINE Alu -16 126 24 23 0 0 0 chr1 182954296 182954319 -99239345 + AT_rich Low_complexity Low_complexity 1 23 0 1610 164 4 0 chr1 182954329 182954623 -99239041 + AluJb SINE Alu 7 301 0 180 0 0 0 chr1 182954800 182954820 -99238844 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 413 315 114 0 chr1 182955281 182955430 -99238234 + MIR3 SINE MIR 36 201 -7 257 0 32 0 chr1 182956187 182956218 -99237446 - AluSq/x SINE Alu -195 108 77 517 252 14 21 chr1 182956396 182956539 -99237125 + MLT1L LTR MaLR 18 159 -456 879 148 80 40 chr1 182956539 182956715 -99236949 - MER5A DNA MER1_type -4 185 3 1091 249 163 15 chr1 182956715 182957121 -99236543 + MLT1L LTR MaLR 146 611 -4 409 320 113 14 chr1 182957202 182957565 -99236099 - L1MC/D LINE L1 -2059 5749 5351 708 139 0 41 chr1 182957854 182957976 -99235688 - AluSx SINE Alu 0 312 196 1018 117 7 0 chr1 182957977 182958122 -99235542 - AluSx SINE Alu -166 146 1 226 233 0 0 chr1 182958122 182958165 -99235499 + T-rich Low_complexity Low_complexity 5 47 0 954 289 131 28 chr1 182958647 182959214 -99234450 - L2 LINE L2 -447 2867 2243 2095 111 0 13 chr1 182959788 182960095 -99233569 - AluSq SINE Alu -10 303 1 220 270 270 0 chr1 182960462 182960588 -99233076 - L2 LINE L2 -216 3056 2897 200 352 68 0 chr1 182960741 182960829 -99232835 - L2 LINE L2 -514 2800 2707 709 234 65 11 chr1 182960875 182961177 -99232487 - L1ME LINE L1 -670 5494 5177 1223 176 0 18 chr1 182961179 182961400 -99232264 - AluSg/x SINE Alu -11 299 83 22 88 0 0 chr1 182961403 182961460 -99232204 + AT_rich Low_complexity Low_complexity 1 57 0 660 220 59 9 chr1 182962106 182962269 -99231395 + MLT1A2 LTR MaLR 182 367 -23 334 238 0 48 chr1 182962270 182962354 -99231310 - MIR SINE MIR -118 144 65 1680 129 70 0 chr1 182962506 182962777 -99230887 - AluSg SINE Alu -20 290 1 31 26 0 0 chr1 182962819 182962857 -99230807 + AT_rich Low_complexity Low_complexity 1 38 0 286 229 0 0 chr1 182962864 182962925 -99230739 - L2 LINE L2 -1037 2277 2217 1103 187 19 28 chr1 182962940 182963154 -99230510 - MER20 DNA MER1_type -7 212 1 2098 88 11 0 chr1 182964144 182964429 -99229235 + AluSp SINE Alu 1 288 -25 333 0 0 0 chr1 182964432 182964469 -99229195 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 1687 212 100 71 chr1 182964492 182964536 -99229128 - L1MCc LINE L1 -4887 1536 1495 306 0 0 0 chr1 182964536 182964570 -99229094 + (TG)n Simple_repeat Simple_repeat 2 35 0 1687 212 100 71 chr1 182964570 182965555 -99228109 - L1MCc LINE L1 -4928 1495 900 432 196 45 125 chr1 182965555 182965603 -99228061 + MER87 LTR ERV1 1 51 -490 1902 116 3 11 chr1 182965603 182965930 -99227734 + AluSx SINE Alu 1 325 0 432 196 45 125 chr1 182965930 182966048 -99227616 + MER87 LTR ERV1 51 148 -393 1138 246 78 48 chr1 182966195 182966680 -99226984 + LTR8A LTR ERV1 107 727 0 353 354 11 11 chr1 182966680 182966855 -99226809 - L1MCc LINE L1 -5520 903 729 1094 255 66 9 chr1 182967020 182967353 -99226311 - L1MCc LINE L1 -5992 431 80 1974 112 0 11 chr1 182968318 182968631 -99225033 - AluSx SINE Alu 0 310 1 2082 136 7 0 chr1 182969413 182969723 -99223941 - AluSx SINE Alu 0 312 1 2119 160 19 27 chr1 182970079 182970455 -99223209 - MER39 LTR ERV1 -2 705 333 464 246 0 0 chr1 182970455 182970573 -99223091 - L1M4 LINE L1 -1255 4891 4774 1149 168 84 14 chr1 182970668 182970882 -99222782 + MER39 LTR ERV1 2 230 -477 455 171 0 0 chr1 182970884 182970960 -99222704 - AluJ/FLAM SINE Alu -235 77 2 479 317 48 48 chr1 182971465 182971618 -99222046 - MIR SINE MIR -2 260 105 2193 88 10 0 chr1 182971618 182971912 -99221752 + AluSx SINE Alu 1 297 -15 479 317 48 48 chr1 182971912 182971985 -99221679 - MIR SINE MIR -156 106 34 1885 139 10 0 chr1 182972087 182972382 -99221282 - AluSx SINE Alu -14 298 1 534 285 118 11 chr1 182972908 182973094 -99220570 + MIR SINE MIR 31 236 -26 2482 117 26 103 chr1 182973097 182973246 -99220418 + MER4C LTR ERV1 1 160 -305 1622 131 0 88 chr1 182973246 182973551 -99220113 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr1 182973560 182973583 -99220081 + (TAAAG)n Simple_repeat Simple_repeat 2 24 0 2482 117 26 103 chr1 182973583 182973606 -99220058 + MER4C LTR ERV1 168 191 -274 1181 91 11 0 chr1 182973606 182973782 -99219882 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2482 117 26 103 chr1 182973782 182974102 -99219562 + MER4C LTR ERV1 191 465 0 214 249 77 94 chr1 182974554 182974640 -99219024 - MIR SINE MIR -6 256 170 971 206 64 0 chr1 182974640 182974844 -99218820 + MER20 DNA MER1_type 3 219 0 214 249 77 94 chr1 182974844 182974938 -99218726 - MIR SINE MIR -92 170 79 231 259 17 0 chr1 182976883 182976941 -99216723 - MIR SINE MIR -57 151 93 271 254 15 0 chr1 182977362 182977429 -99216235 - L2 LINE L2 -35 3278 3211 200 231 0 0 chr1 182977538 182977577 -99216087 + T-rich Low_complexity Low_complexity 3 41 0 257 346 57 50 chr1 182977584 182977882 -99215782 + L2 LINE L2 2148 2447 -867 877 309 84 40 chr1 182978027 182978845 -99214819 - L2 LINE L2 -71 3242 2387 1450 305 65 64 chr1 182978848 182979032 -99214632 - L2 LINE L2 -1379 1935 1753 1672 113 0 96 chr1 182979032 182979323 -99214341 + AluSx SINE Alu 1 263 -49 1450 305 65 64 chr1 182979323 182980196 -99213468 - L2 LINE L2 -1561 1753 877 810 274 28 14 chr1 182980457 182980669 -99212995 - MIR SINE MIR 0 262 48 217 400 10 10 chr1 182981192 182981292 -99212372 - MIR SINE MIR -92 116 17 276 30 0 0 chr1 182981430 182981463 -99212201 + (CA)n Simple_repeat Simple_repeat 2 34 0 364 243 47 0 chr1 182981654 182981761 -99211903 + L1ME4a LINE L1 5711 5822 -299 2004 104 4 0 chr1 182981768 182982047 -99211617 + AluSx SINE Alu 1 280 -32 405 0 0 0 chr1 182982054 182982099 -99211565 + (TAAAA)n Simple_repeat Simple_repeat 2 46 0 247 347 65 8 chr1 182984410 182984534 -99209130 + MIR SINE MIR 56 186 -76 180 323 182 0 chr1 182984610 182984709 -99208955 + L2 LINE L2 3182 3298 -15 505 239 54 45 chr1 182985213 182985365 -99208299 - MIR SINE MIR -63 145 14 291 313 49 73 chr1 182986697 182986943 -99206721 - L2 LINE L2 -2 3270 3031 881 260 61 9 chr1 182986945 182987176 -99206488 + MIR SINE MIR 2 244 -18 391 321 36 0 chr1 182988385 182988525 -99205139 + MIR3 SINE MIR 49 193 -15 201 211 0 0 chr1 182989270 182989322 -99204342 + CT-rich Low_complexity Low_complexity 3 54 0 304 186 268 0 chr1 182990415 182990512 -99203152 + L1ME4a LINE L1 5988 6110 -11 2140 143 39 0 chr1 182990706 182991041 -99202623 + MER7A DNA MER2_type 1 346 0 1133 87 0 0 chr1 182991842 182991980 -99201684 + AluSp/q SINE Alu 161 298 -15 1622 136 65 58 chr1 182992130 182992305 -99201359 - AluJo SINE Alu -2 310 138 2378 49 19 36 chr1 182992305 182992613 -99201051 + AluY SINE Alu 1 303 -8 2184 114 0 7 chr1 182992619 182992916 -99200748 + AluSx SINE Alu 1 295 -17 1622 136 65 58 chr1 182992916 182993041 -99200623 - AluJo SINE Alu -178 134 1 340 252 218 19 chr1 182993398 182993604 -99200060 + L2 LINE L2 3021 3267 -46 627 283 142 17 chr1 182993676 182994135 -99199529 - L1M4 LINE L1 -1136 5010 4495 512 219 18 9 chr1 182994403 182994517 -99199147 - MLT1L LTR MaLR -2 613 499 1713 105 155 4 chr1 182994666 182994924 -99198740 - AluSx SINE Alu -15 297 1 541 250 19 31 chr1 182994933 182995093 -99198571 - MLT1L LTR MaLR -326 289 132 899 242 54 42 chr1 182995603 182995938 -99197726 - HAL1 LINE L1 -5 2502 2164 427 219 59 0 chr1 182996216 182996365 -99197299 - HAL1 LINE L1 -647 1860 1678 333 325 20 49 chr1 182996470 182996673 -99196991 - HAL1 LINE L1 -2073 434 238 4730 218 18 82 chr1 182997758 182997882 -99195782 - L1MDa LINE L1 -1034 5506 5376 1573 140 85 37 chr1 182997882 182998154 -99195510 + AluJo SINE Alu 3 287 -25 4730 218 18 82 chr1 182998154 182999543 -99194121 - L1MDa LINE L1 -1164 5376 3900 336 24 0 0 chr1 182999543 182999584 -99194080 + (TG)n Simple_repeat Simple_repeat 2 42 0 4730 218 18 82 chr1 182999584 182999776 -99193888 - L1MDa LINE L1 -2640 3900 3978 1645 22 0 0 chr1 182999776 182999957 -99193707 + AluYb8 SINE Alu 133 313 -5 4730 218 18 82 chr1 182999957 183000173 -99193491 - L1MDa LINE L1 -2561 3979 3751 735 167 0 45 chr1 183000175 183000307 -99193357 + FLAM_C SINE Alu 2 127 -16 2005 151 3 0 chr1 183000313 183000612 -99193052 + AluSx SINE Alu 1 300 -12 26 30 0 0 chr1 183000612 183000645 -99193019 + AT_rich Low_complexity Low_complexity 1 33 0 3295 212 46 15 chr1 183000679 183001589 -99192075 - L1MDa LINE L1 -2866 3674 2737 1960 192 7 54 chr1 183001588 183002015 -99191649 - L1MDa LINE L1 -6114 426 20 * 330 26 0 0 chr1 183002016 183002055 -99191609 + (TG)n Simple_repeat Simple_repeat 2 40 0 1101 176 6 130 chr1 183002055 183002378 -99191286 - AluJo SINE Alu -18 284 2 4059 109 9 0 chr1 183002394 183002971 -99190693 + L1PA13 LINE L1 5579 6160 -3 457 145 0 0 chr1 183002971 183003040 -99190624 - FLAM SINE Alu -20 123 55 260 294 24 0 chr1 183004619 183004685 -99188979 + CT-rich Low_complexity Low_complexity 2 72 -16 2166 113 13 0 chr1 183004685 183004986 -99188678 - AluSx SINE Alu -7 305 1 260 294 24 0 chr1 183004986 183005004 -99188660 + CT-rich Low_complexity Low_complexity 72 88 0 603 255 38 22 chr1 183005136 183005320 -99188344 + L1ME1 LINE L1 3303 3489 -2657 31448 115 17 53 chr1 183005325 183007924 -99185740 + L1PA8 LINE L1 1 2693 -3479 200 59 29 0 chr1 183007924 183007958 -99185706 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 31448 115 17 53 chr1 183007958 183011778 -99181886 + L1PA8 LINE L1 2693 6172 0 5226 209 77 70 chr1 183011776 183011971 -99181693 + L1ME1 LINE L1 3475 3667 -2499 * 692 109 0 0 chr1 183011971 183012072 -99181592 + HY3 scRNA scRNA 1 101 0 5226 209 77 70 chr1 183012072 183012103 -99181561 + L1ME1 LINE L1 3667 3696 -2470 2029 143 13 0 chr1 183012103 183012410 -99181254 + AluSx SINE Alu 1 311 -1 5226 209 77 70 chr1 183012410 183013342 -99180322 + L1ME1 LINE L1 3696 4620 -1546 2176 145 3 0 chr1 183013342 183013653 -99180011 - AluSx SINE Alu 0 312 1 5226 209 77 70 chr1 183013653 183014101 -99179563 + L1ME1 LINE L1 4620 5063 -1103 1621 202 11 0 chr1 183014101 183014378 -99179286 + AluJb SINE Alu 1 280 -32 5226 209 77 70 chr1 183014378 183014792 -99178872 + L1ME1 LINE L1 5063 5472 -694 2216 187 74 40 chr1 183014792 183014894 -99178770 + MLT2B1 LTR ERVL 1 98 -422 2235 117 0 3 chr1 183014894 183015202 -99178462 + AluSx SINE Alu 1 307 -5 2216 187 74 40 chr1 183015202 183015602 -99178062 + MLT2B1 LTR ERVL 98 520 0 5226 209 77 70 chr1 183015602 183016259 -99177405 + L1ME1 LINE L1 5472 6161 -5 347 229 38 0 chr1 183016275 183016380 -99177284 + L1ME3A LINE L1 5191 5299 -847 * 488 277 114 7 chr1 183016378 183016609 -99177055 + L1ME3A LINE L1 5628 5898 -272 2078 102 20 30 chr1 183016609 183016912 -99176752 + AluSg SINE Alu 1 300 -10 488 277 114 7 chr1 183016912 183016969 -99176695 + L1ME3A LINE L1 5898 5947 -223 21 0 0 0 chr1 183017156 183017177 -99176487 + AT_rich Low_complexity Low_complexity 1 21 0 2143 77 18 0 chr1 183017771 183018044 -99175620 + AluY SINE Alu 19 296 -15 1948 132 0 39 chr1 183018370 183018681 -99174983 - AluSx SINE Alu -13 299 1 1170 329 73 33 chr1 183020004 183020971 -99172693 + L2 LINE L2 1707 2712 -602 381 298 6 81 chr1 183021086 183021247 -99172417 + L2 LINE L2 2905 3053 -219 394 273 53 20 chr1 183021404 183021554 -99172110 + MIR SINE MIR 19 173 -89 1908 142 0 14 chr1 183021584 183021895 -99171769 - AluJo SINE Alu 0 309 3 331 311 86 24 chr1 183022646 183022855 -99170809 + MIR SINE MIR 20 241 -21 757 281 45 30 chr1 183025005 183025339 -99168325 + L3 LINE CR1 1064 1402 -175 1279 138 4 71 chr1 183026149 183026374 -99167290 + MER20 DNA MER1_type 8 217 -2 1897 167 13 40 chr1 183026488 183026860 -99166804 + MLT1A1 LTR MaLR 1 362 -3 1352 229 75 14 chr1 183028515 183028992 -99164672 - MER21A LTR ERV1 -118 813 208 316 248 69 0 chr1 183028996 183029097 -99164567 - MER21B LTR ERV1 -86 777 670 275 244 12 85 chr1 183029204 183029286 -99164378 - MER21B LTR ERV1 -776 87 12 381 264 45 52 chr1 183029316 183029471 -99164193 + L1ME LINE L1 5596 5749 -421 2445 84 3 0 chr1 183030648 183030947 -99162717 + AluSp SINE Alu 2 301 -12 23 0 0 0 chr1 183030957 183030980 -99162684 + AT_rich Low_complexity Low_complexity 1 23 0 229 346 37 0 chr1 183031059 183031166 -99162498 + L1ME LINE L1 5469 5579 -583 1286 285 75 7 chr1 183031188 183031789 -99161875 - L2 LINE L2 -1 3312 2665 221 175 0 0 chr1 183031813 183031853 -99161811 - L2 LINE L2 -787 2527 2488 306 200 0 0 chr1 183031984 183032049 -99161615 - MIR SINE MIR -25 237 173 2213 116 3 0 chr1 183032166 183032460 -99161204 + AluSq SINE Alu 1 295 -18 632 184 29 29 chr1 183032612 183032748 -99160916 + L1PA10 LINE L1 6031 6166 -2 469 247 31 3 chr1 183032925 183033088 -99160576 + MIR SINE MIR 19 231 -31 402 180 11 22 chr1 183036511 183036600 -99157064 + MIR SINE MIR 108 195 -67 1729 93 31 39 chr1 183036774 183037031 -99156633 + AluSq SINE Alu 2 256 -57 368 300 114 23 chr1 183037296 183037559 -99156105 - L2 LINE L2 -167 3105 2819 2262 108 0 6 chr1 183037824 183038138 -99155526 + AluSx SINE Alu 1 312 0 304 339 0 0 chr1 183039535 183039653 -99154011 + C-rich Low_complexity Low_complexity 1 118 0 2049 66 0 33 chr1 183040670 183040944 -99152720 + AluSq SINE Alu 37 301 -12 2069 83 36 23 chr1 183042304 183042605 -99151059 - AluSx SINE Alu -7 305 1 5296 103 56 40 chr1 183043439 183044297 -99149367 + MER4D LTR ERV1 1 872 0 283 217 50 0 chr1 183044503 183044563 -99149101 + MIR SINE MIR 109 171 -91 760 305 10 1 chr1 183044697 183044966 -99148698 - L1MC/D LINE L1 -382 5739 5466 661 268 105 9 chr1 183045564 183045792 -99147872 + MIR SINE MIR 9 258 -4 1631 246 163 6 chr1 183045794 183046334 -99147330 - HsTC2 DNA Tc2 0 1898 1274 274 180 45 34 chr1 183046354 183046443 -99147221 - MER104 DNA Tc2 -87 93 4 2142 105 3 0 chr1 183046634 183046929 -99146735 + AluSq SINE Alu 1 296 -17 725 243 73 48 chr1 183046935 183047207 -99146457 - L3 LINE CR1 -78 1499 1221 207 0 0 0 chr1 183047291 183047314 -99146350 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 2510 65 0 9 chr1 183047332 183047653 -99146011 - L1PA7 LINE L1 -1 6153 5836 187 265 24 72 chr1 183047673 183047756 -99145908 - L3 LINE CR1 -466 1111 1033 1732 186 6 0 chr1 183048273 183048590 -99145074 + 7SLRNA srpRNA srpRNA 1 319 -1 303 28 0 0 chr1 183048994 183049030 -99144634 + (GA)n Simple_repeat Simple_repeat 1 36 0 560 238 5 61 chr1 183049225 183049417 -99144247 - MER5A DNA MER1_type -6 183 4 361 295 33 0 chr1 183049735 183049857 -99143807 - LTR67 LTR ERVL 0 557 432 395 235 51 0 chr1 183050369 183050467 -99143197 - MIR3 SINE MIR -9 199 97 637 294 120 100 chr1 183050630 183050970 -99142694 - L3 LINE CR1 -703 874 515 1577 116 0 0 chr1 183050970 183051194 -99142470 - AluSg/x SINE Alu -3 309 86 637 294 120 100 chr1 183051194 183051461 -99142203 - L3 LINE CR1 -1062 515 255 400 299 26 39 chr1 183052164 183052318 -99141346 - MIR SINE MIR -109 153 2 318 306 31 102 chr1 183053094 183053290 -99140374 - MIR SINE MIR -78 184 3 372 22 0 0 chr1 183053867 183053912 -99139752 + (TG)n Simple_repeat Simple_repeat 2 46 0 311 236 125 42 chr1 183054444 183054588 -99139076 - L1ME4a LINE L1 -86 6035 5880 4637 102 22 1 chr1 183054604 183055282 -99138382 + L1MA2 LINE L1 5613 6304 0 248 315 23 31 chr1 183055325 183055455 -99138209 - L1ME4a LINE L1 -1979 5829 5701 2172 214 87 25 chr1 183055480 183056042 -99137622 - MER77 LTR ERV1 -8 597 1 788 312 173 53 chr1 183056049 183056937 -99136727 + L2 LINE L2 1215 1995 -1277 1464 114 23 151 chr1 183056937 183057287 -99136377 + AluYb8 SINE Alu 1 305 -13 180 0 0 0 chr1 183057287 183057307 -99136357 + (ATG)n Simple_repeat Simple_repeat 2 21 0 788 312 173 53 chr1 183057307 183058209 -99135455 + L2 LINE L2 1994 3217 -55 617 286 13 49 chr1 183058215 183058248 -99135416 - L1MB2 LINE L1 -283 5888 5855 1887 112 3 55 chr1 183058248 183058412 -99135252 - AluSx SINE Alu -16 296 154 1814 116 70 0 chr1 183058412 183058697 -99134967 - AluSx SINE Alu -7 305 1 1887 112 3 55 chr1 183058697 183058844 -99134820 - AluSx SINE Alu -158 154 1 617 286 13 49 chr1 183058844 183058952 -99134712 - L1MB2 LINE L1 -316 5855 5754 469 157 10 10 chr1 183058952 183059054 -99134610 + CT-rich Low_complexity Low_complexity 2 103 0 2128 125 0 0 chr1 183059068 183059373 -99134291 - AluSx SINE Alu -7 305 1 3159 147 13 19 chr1 183059374 183060073 -99133591 - L1MB2 LINE L1 -387 5784 5087 455 252 28 42 chr1 183060173 183060316 -99133348 + LTR25 LTR ERV1 223 363 -431 299 258 3 80 chr1 183060313 183060454 -99133210 + MER61E LTR ERV1 75 189 -380 * 1061 137 33 16 chr1 183060492 183060675 -99132989 + MER61E LTR ERV1 341 526 -43 956 222 95 42 chr1 183060696 183060936 -99132728 - L1MB2 LINE L1 -1055 5091 4830 3094 119 7 2 chr1 183060936 183061382 -99132282 - MER83 LTR ERV1 0 448 1 956 222 95 42 chr1 183061382 183061447 -99132217 - L1MB2 LINE L1 -1316 4830 4770 999 248 84 7 chr1 183061449 183061748 -99131916 + MER90 LTR ERV1 253 574 -1 1837 82 60 25 chr1 183063128 183063409 -99130255 + AluSg SINE Alu 2 292 -18 386 259 171 38 chr1 183064213 183064476 -99129188 - L2 LINE L2 -358 2956 2659 979 170 0 22 chr1 183064511 183064693 -99128971 - AluJo SINE Alu -134 178 1 2392 81 3 0 chr1 183065172 183065480 -99128184 + AluSp SINE Alu 1 309 -4 2249 95 7 0 chr1 183065674 183065980 -99127684 + AluSp SINE Alu 1 308 -5 23 78 0 0 chr1 183065983 183066034 -99127630 + AT_rich Low_complexity Low_complexity 1 51 0 1719 151 71 40 chr1 183066332 183066683 -99126981 + MLT1A1 LTR MaLR 4 365 0 258 273 102 23 chr1 183068489 183068577 -99125087 + MIR SINE MIR 150 244 -18 394 309 36 0 chr1 183069790 183069929 -99123735 + MIR3 SINE MIR 49 192 -16 526 160 0 17 chr1 183070643 183070762 -99122902 + CT-rich Low_complexity Low_complexity 4 120 0 681 354 25 12 chr1 183071518 183071840 -99121824 + MER93a LTR ERV1 77 402 0 883 202 88 53 chr1 183073035 183073435 -99120229 + MER57-int LTR ERV1 884 1360 -3576 336 194 0 0 chr1 183073558 183073630 -99120034 + MER57-int LTR ERV1 1749 1820 -3116 * 729 133 33 67 chr1 183073626 183073776 -99119888 + MER57-int LTR ERV1 3603 3747 -1189 * 1200 210 106 133 chr1 183073761 183074525 -99119139 + MER57-int LTR ERV1 4136 4716 -220 1851 169 69 60 chr1 183074673 183075139 -99118525 - LTR54 LTR ERV1 -31 479 10 468 288 55 27 chr1 183075191 183075410 -99118254 + MER57-int LTR ERV1 6791 7015 -522 364 339 48 32 chr1 183075705 183075953 -99117711 + MER93a LTR ERV1 59 310 -92 1670 138 13 46 chr1 183075989 183076293 -99117371 - AluSx SINE Alu -18 294 1 1904 152 32 35 chr1 183077531 183077907 -99115757 - THE1C LTR MaLR 0 375 1 1610 267 76 20 chr1 183077945 183078722 -99114942 + L2 LINE L2 2508 3313 0 534 252 23 0 chr1 183078733 183078864 -99114800 - MIR3 SINE MIR -6 202 69 2238 105 78 20 chr1 183078916 183079260 -99114404 + THE1B LTR MaLR 1 364 0 670 214 57 13 chr1 183079428 183079587 -99114077 + FRAM SINE Alu 1 166 0 475 125 0 0 chr1 183080515 183080587 -99113077 + tRNA-Asp-GAC tRNA tRNA 1 72 -3 654 0 0 0 chr1 183081216 183081288 -99112376 - tRNA-Gly-GGC tRNA tRNA -2 72 1 568 286 89 40 chr1 183084875 183085099 -99108565 + MIR SINE MIR 28 262 0 425 271 45 101 chr1 183085066 183085313 -99108351 - MIR SINE MIR -1 261 29 * 1988 124 0 0 chr1 183085461 183085743 -99107921 - AluSx SINE Alu -30 282 1 669 142 27 27 chr1 183086739 183086887 -99106777 - L1MD3 LINE L1 0 7995 7848 222 265 59 15 chr1 183087051 183087119 -99106545 + L2 LINE L2 3202 3272 0 750 0 0 0 chr1 183087383 183087466 -99106198 - tRNA-Leu-CTG tRNA tRNA -3 83 1 641 14 0 0 chr1 183088155 183088227 -99105437 + tRNA-Gly-GGA tRNA tRNA 1 72 -3 276 223 86 24 chr1 183088555 183088671 -99104993 + MER3 DNA MER1_type 70 123 -86 1401 158 93 28 chr1 183088677 183089031 -99104633 + MER3 DNA MER1_type 2235 2611 0 499 86 0 0 chr1 183089169 183089239 -99104425 + tRNA-Asp-GAC tRNA tRNA 3 72 -3 1646 220 39 29 chr1 183089272 183089685 -99103979 + HUERS-P3 LTR ERV1 8480 8896 -23 2768 154 49 2 chr1 183089707 183090154 -99103510 + LTR25 LTR ERV1 1 468 -326 227 235 176 0 chr1 183090155 183090223 -99103441 + LTR25 LTR ERV1 422 501 -293 * 723 479 19 19 chr1 183090195 183090452 -99103212 + LTR25 LTR ERV1 408 664 -130 206 174 65 0 chr1 183090855 183090901 -99102763 + MIR SINE MIR 109 157 -105 453 284 88 66 chr1 183091679 183091819 -99101845 - L1M4 LINE L1 -3272 2874 2738 2087 116 6 55 chr1 183091819 183092147 -99101517 + AluSx SINE Alu 1 312 0 453 284 88 66 chr1 183092147 183092657 -99101007 - L1M4 LINE L1 -3408 2738 2210 1702 126 72 4 chr1 183092722 183092984 -99100680 + AluSx SINE Alu 1 280 -32 891 192 0 0 chr1 183093287 183093433 -99100231 + FRAM SINE Alu 1 146 -30 4770 167 53 57 chr1 183093761 183094836 -99098828 + MER11C LTR ERVK 1 1071 0 2148 103 6 10 chr1 183095289 183095600 -99098064 + AluSx SINE Alu 1 310 -2 1287 107 0 11 chr1 183095600 183095777 -99097887 + AluSg/x SINE Alu 134 308 -4 222 37 0 0 chr1 183095805 183095832 -99097832 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 204 224 15 30 chr1 183095832 183095899 -99097765 + (TA)n Simple_repeat Simple_repeat 2 67 0 2338 40 0 0 chr1 183096059 183096332 -99097332 - L1PA5 LINE L1 -198 5956 5684 1288 65 29 0 chr1 183096335 183096505 -99097159 + L1PA5 LINE L1 5965 6139 -15 25 0 0 0 chr1 183096673 183096698 -99096966 + AT_rich Low_complexity Low_complexity 1 25 0 645 14 0 0 chr1 183097301 183097375 -99096289 + tRNA-Asn-AAC tRNA tRNA 1 74 -3 199 185 15 92 chr1 183098185 183098250 -99095414 + L2 LINE L2 2951 3010 -262 289 298 66 8 chr1 183098313 183098434 -99095230 + L2 LINE L2 3138 3265 -7 206 342 0 13 chr1 183098841 183098917 -99094747 - L3 LINE CR1 -1078 499 425 367 239 44 9 chr1 183100626 183100739 -99092925 - L1MC4 LINE L1 0 8042 7926 464 224 55 77 chr1 183101079 183101262 -99092402 + MIR SINE MIR 84 262 0 301 308 87 0 chr1 183101263 183101367 -99092297 - MIR SINE MIR -69 139 27 336 231 234 27 chr1 183102844 183103100 -99090564 + L1ME4a LINE L1 5812 6120 -1 22 35 0 0 chr1 183103101 183103130 -99090534 + AT_rich Low_complexity Low_complexity 1 29 0 217 419 50 6 chr1 183103440 183103600 -99090064 - L2 LINE L2 -4 3268 3102 2346 103 0 0 chr1 183103684 183103986 -99089678 + AluY SINE Alu 1 302 -9 2221 118 0 10 chr1 183104848 183105162 -99088502 + AluSx SINE Alu 1 311 -1 374 267 99 31 chr1 183106442 183106603 -99087061 - MIR3 SINE MIR -7 201 30 1696 134 10 62 chr1 183108721 183109026 -99084638 + AluJo SINE Alu 11 299 -13 284 233 17 0 chr1 183109084 183109144 -99084520 + CT-rich Low_complexity Low_complexity 5 65 0 222 291 38 13 chr1 183109393 183109472 -99084192 - L2 LINE L2 -296 2976 2896 309 198 176 0 chr1 183109607 183109698 -99083966 + MIR SINE MIR 100 206 -56 404 312 0 0 chr1 183109860 183109969 -99083695 + L2 LINE L2 3151 3259 -13 718 366 39 17 chr1 183110006 183110547 -99083117 - L2 LINE L2 -540 2774 2222 233 268 28 0 chr1 183110714 183110785 -99082879 + GA-rich Low_complexity Low_complexity 5 77 0 2061 113 92 63 chr1 183111305 183111549 -99082115 + MLT1B LTR MaLR 1 261 -129 1268 133 5 23 chr1 183111549 183111767 -99081897 + L1PA14 LINE L1 5948 6161 0 2061 113 92 63 chr1 183111767 183111901 -99081763 + MLT1B LTR MaLR 261 390 0 5069 88 0 6 chr1 183112182 183112843 -99080821 - LTR8 LTR ERV1 -34 657 1 184 400 0 0 chr1 183113295 183113395 -99080269 - L2 LINE L2 -2047 1267 1168 3935 188 65 22 chr1 183113675 183113721 -99079943 - MER21B LTR ERV1 -52 811 768 252 0 0 0 chr1 183113721 183113749 -99079915 + (CAAG)n Simple_repeat Simple_repeat 4 31 0 3935 188 65 22 chr1 183113749 183113784 -99079880 - MER21B LTR ERV1 -95 768 736 3408 128 19 15 chr1 183113784 183114309 -99079355 - MER1A DNA MER1_type 0 527 1 3935 188 65 22 chr1 183114309 183114980 -99078684 - MER21B LTR ERV1 -127 736 26 2085 202 36 28 chr1 183114980 183115450 -99078214 + LTR62 LTR ERVK 1 474 -245 606 255 48 7 chr1 183115570 183115715 -99077949 - MLT1G LTR MaLR -427 163 13 257 194 45 0 chr1 183116219 183116286 -99077378 + MLT1L LTR MaLR 128 197 -418 270 285 124 14 chr1 183116429 183116626 -99077038 + MLT1L LTR MaLR 363 606 -1 245 291 104 52 chr1 183116741 183116875 -99076789 + MIR3 SINE MIR 43 183 -25 2284 103 0 0 chr1 183117002 183117294 -99076370 - AluSx SINE Alu -20 292 1 565 200 0 19 chr1 183117336 183117441 -99076223 - FLAM_A SINE Alu -16 126 24 23 0 0 0 chr1 183117518 183117541 -99076123 + AT_rich Low_complexity Low_complexity 1 23 0 1717 164 4 0 chr1 183117551 183117845 -99075819 + AluJb SINE Alu 7 301 0 353 315 114 0 chr1 183118503 183118652 -99075012 + MIR3 SINE MIR 36 201 -7 254 0 32 0 chr1 183119408 183119439 -99074225 - AluSq/x SINE Alu -194 108 77 508 252 14 21 chr1 183119618 183119761 -99073903 + MLT1L LTR MaLR 18 159 -456 830 158 79 34 chr1 183119761 183119938 -99073726 - MER5A DNA MER1_type -4 185 1 1048 256 164 15 chr1 183119939 183120342 -99073322 + MLT1L LTR MaLR 149 611 -4 428 320 113 14 chr1 183120423 183120786 -99072878 - L1MC/D LINE L1 -2059 5749 5351 1636 104 183 19 chr1 183121087 183121355 -99072309 - AluSx SINE Alu 0 312 1 799 294 143 22 chr1 183121888 183122391 -99071273 - L2 LINE L2 -508 2806 2243 2861 10 0 0 chr1 183122964 183123269 -99070395 - AluYa5 SINE Alu -6 305 1 198 177 145 0 chr1 183123636 183123698 -99069966 - L2 LINE L2 -216 3056 2986 763 231 51 11 chr1 183124049 183124354 -99069310 - L1ME LINE L1 -670 5494 5177 1426 155 0 18 chr1 183124356 183124582 -99069082 - AluSg/x SINE Alu -6 306 85 23 86 0 0 chr1 183124585 183124643 -99069021 + AT_rich Low_complexity Low_complexity 1 58 0 674 212 59 9 chr1 183124844 183125007 -99068657 + MLT1A2 LTR MaLR 182 367 -23 294 263 0 38 chr1 183125008 183125088 -99068576 - MIR SINE MIR -118 144 68 1711 140 70 0 chr1 183125243 183125514 -99068150 - AluSg SINE Alu -20 290 1 31 26 0 0 chr1 183125555 183125593 -99068071 + AT_rich Low_complexity Low_complexity 1 38 0 251 246 0 0 chr1 183125600 183125661 -99068003 - L2 LINE L2 -1037 2277 2217 1104 179 19 28 chr1 183125678 183125890 -99067774 - MER20 DNA MER1_type -9 210 1 2078 102 14 0 chr1 183126880 183127163 -99066501 + AluSp SINE Alu 1 287 -26 198 0 0 0 chr1 183127167 183127189 -99066475 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 1687 213 99 71 chr1 183127217 183127260 -99066404 - L1MCc LINE L1 -4887 1536 1496 342 0 0 0 chr1 183127260 183127298 -99066366 + (TG)n Simple_repeat Simple_repeat 2 39 0 1687 213 99 71 chr1 183127298 183128283 -99065381 - L1MCc LINE L1 -4927 1496 900 384 209 45 125 chr1 183128283 183128331 -99065333 + MER87 LTR ERV1 1 51 -490 2081 109 3 11 chr1 183128331 183128662 -99065002 + AluSx SINE Alu 1 329 0 384 209 45 125 chr1 183128662 183128780 -99064884 + MER87 LTR ERV1 51 148 -393 1146 256 75 47 chr1 183128927 183129412 -99064252 + LTR8A LTR ERV1 107 727 0 395 325 13 7 chr1 183129412 183129563 -99064101 - L1MCc LINE L1 -5520 903 752 207 0 0 0 chr1 183129574 183129597 -99064067 + (TTG)n Simple_repeat Simple_repeat 2 24 0 467 204 148 14 chr1 183129761 183129903 -99063761 - L1MCc LINE L1 -5992 431 271 831 147 0 0 chr1 183130007 183130143 -99063521 + AluSg/x SINE Alu 163 298 -12 192 260 0 0 chr1 183130312 183130362 -99063302 + L2 LINE L2 3264 3313 0 592 95 0 12 chr1 183130626 183130710 -99062954 - tRNA-Leu-CTG tRNA tRNA -3 83 1 482 114 0 0 chr1 183131398 183131468 -99062196 + tRNA-Gly-GGA tRNA tRNA 1 70 -5 1085 176 86 20 chr1 183131775 183132019 -99061645 + LTR25 LTR ERV1 405 664 -130 206 174 65 0 chr1 183132422 183132468 -99061196 + MIR SINE MIR 109 157 -105 416 278 90 73 chr1 183133246 183133386 -99060278 - L1M4 LINE L1 -3272 2874 2738 2079 116 6 55 chr1 183133386 183133714 -99059950 + AluSx SINE Alu 1 312 0 416 278 90 73 chr1 183133714 183134227 -99059437 - L1M4 LINE L1 -3408 2738 2210 1705 130 72 4 chr1 183134292 183134554 -99059110 + AluSx SINE Alu 1 280 -32 10736 51 10 57 chr1 183134636 183136079 -99057585 - SVA Other Other 0 1386 12 1754 155 43 13 chr1 183136200 183136503 -99057161 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 183136527 183136549 -99057115 + AT_rich Low_complexity Low_complexity 1 22 0 349 333 0 10 chr1 183137215 183137314 -99056350 - MIR SINE MIR -157 105 8 23 0 0 0 chr1 183137351 183137374 -99056290 + AT_rich Low_complexity Low_complexity 1 23 0 2348 98 0 0 chr1 183137814 183138109 -99055555 + AluSx SINE Alu 2 296 -16 866 138 0 0 chr1 183138695 183138818 -99054846 + FLAM_C SINE Alu 13 135 -8 515 165 0 61 chr1 183139449 183139554 -99054110 - L1MB8 LINE L1 -6 6172 6073 1938 145 70 22 chr1 183139554 183139912 -99053752 - THE1C LTR MaLR 0 375 1 2439 82 3 0 chr1 183139941 183140235 -99053429 - AluSp SINE Alu -18 295 1 280 209 0 22 chr1 183140245 183140336 -99053328 - L1M4 LINE L1 -954 5192 5104 461 263 83 44 chr1 183140413 183140902 -99052762 - L1MB8 LINE L1 -753 5393 5189 2260 105 3 3 chr1 183140968 183141262 -99052402 - AluSx SINE Alu -18 294 1 333 0 0 0 chr1 183141589 183141626 -99052038 + (TA)n Simple_repeat Simple_repeat 1 37 0 1363 131 0 0 chr1 183142856 183143039 -99050625 + AluSx SINE Alu 1 183 -129 1953 110 79 0 chr1 183143340 183143630 -99050034 - AluSq SINE Alu 0 313 1 739 154 24 16 chr1 183143762 183143885 -99049779 + AluSq/x SINE Alu 4 127 -186 242 257 0 29 chr1 183143899 183143969 -99049695 - MER116 DNA Mariner -11 69 2 257 254 17 0 chr1 183144057 183144116 -99049548 - Zaphod DNA AcHobo -9 4022 3963 1264 62 0 0 chr1 183144120 183144280 -99049384 - AluY SINE Alu 0 311 152 1438 148 5 0 chr1 183144328 183144545 -99049119 - AluSq SINE Alu -21 292 75 2058 98 7 14 chr1 183144656 183144952 -99048712 + AluSx SINE Alu 1 294 -18 1006 273 33 18 chr1 183144952 183145227 -99048437 - MER115 DNA AcHobo -82 611 333 695 276 122 0 chr1 183145260 183145481 -99048183 - MER115 DNA AcHobo -445 248 1 282 299 74 45 chr1 183145549 183145793 -99047871 + L1ME LINE L1 3905 4155 -1991 926 207 128 96 chr1 183145900 183146284 -99047380 + L1MC5 LINE L1 7276 7646 -315 2292 73 24 7 chr1 183146284 183146572 -99047092 + AluSc SINE Alu 1 293 -16 926 207 128 96 chr1 183146572 183146653 -99047011 + L1MC5 LINE L1 7646 7723 -238 2293 101 0 0 chr1 183146653 183146950 -99046714 + AluSx SINE Alu 1 297 -15 926 207 128 96 chr1 183146950 183147101 -99046563 + L1MC5 LINE L1 7723 7913 -48 22 70 0 0 chr1 183147109 183147152 -99046512 + AT_rich Low_complexity Low_complexity 1 43 0 809 189 0 0 chr1 183147266 183147393 -99046271 - FLAM_A SINE Alu -6 127 1 266 244 26 13 chr1 183147419 183147497 -99046167 + L1P LINE L1 4282 4360 -1786 369 231 132 38 chr1 183147504 183147716 -99045948 + L1ME LINE L1 5012 5243 -903 851 111 0 0 chr1 183147745 183147862 -99045802 + FLAM_C SINE Alu 1 117 -16 4997 116 69 36 chr1 183147905 183148165 -99045499 - MER49 LTR ERV1 -25 898 648 2067 128 0 0 chr1 183148165 183148463 -99045201 - AluSg SINE Alu -12 298 1 4997 116 69 36 chr1 183148463 183149071 -99044593 - MER49 LTR ERV1 -275 648 1 317 269 204 5 chr1 183149155 183149366 -99044298 + L1ME LINE L1 5337 5562 -600 1903 148 10 3 chr1 183149373 183149676 -99043988 + AluJb SINE Alu 1 305 -7 28 0 0 0 chr1 183149872 183149900 -99043764 + AT_rich Low_complexity Low_complexity 1 28 0 2338 59 0 16 chr1 183150205 183150512 -99043152 - AluSg SINE Alu -8 302 1 672 266 120 4 chr1 183152821 183153054 -99040610 - MIR SINE MIR -1 261 2 2312 98 3 0 chr1 183153180 183153486 -99040178 - AluSp SINE Alu -6 307 1 180 0 0 0 chr1 183153886 183153906 -99039758 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1516 162 28 38 chr1 183153908 183154198 -99039466 - AluJo SINE Alu -25 287 1 1071 177 36 0 chr1 183154375 183154567 -99039097 - MER58B DNA MER1_type 0 341 143 1067 140 104 5 chr1 183154568 183154789 -99038875 - L1MC2 LINE L1 -1 6343 6101 3485 96 2 30 chr1 183154789 183155287 -99038377 - MER1A DNA MER1_type 0 529 46 4605 114 14 63 chr1 183155301 183155667 -99037997 - L1MC2 LINE L1 -236 6108 5800 1460 195 77 16 chr1 183155667 183156031 -99037633 - MLT1B LTR MaLR -2 388 3 4605 114 14 63 chr1 183156031 183156455 -99037209 - L1MC2 LINE L1 -544 5800 5357 257 188 0 47 chr1 183156525 183156589 -99037075 + CT-rich Low_complexity Low_complexity 3 63 0 704 313 107 14 chr1 183156655 183156936 -99036728 + L2 LINE L2 308 614 -2700 971 170 0 43 chr1 183156937 183157125 -99036539 - AluJo SINE Alu -12 300 121 2969 264 133 61 chr1 183157128 183158295 -99035369 + L2 LINE L2 622 1888 -1426 2309 95 7 13 chr1 183158295 183158464 -99035200 - AluSx SINE Alu -8 304 136 2198 77 7 27 chr1 183158464 183158761 -99034903 - AluY SINE Alu -9 302 12 2309 95 7 13 chr1 183158761 183158897 -99034767 - AluSx SINE Alu -176 136 1 2969 264 133 61 chr1 183158897 183158984 -99034680 + L2 LINE L2 1888 1967 -1347 422 258 81 40 chr1 183159240 183159438 -99034226 - L1MC4 LINE L1 -27 8015 7810 273 296 16 40 chr1 183159446 183159571 -99034093 - L1MC4a LINE L1 -1211 6597 6476 569 244 122 18 chr1 183159582 183159738 -99033926 - L2 LINE L2 -607 2707 2532 351 113 0 0 chr1 183159738 183159791 -99033873 + (CA)n Simple_repeat Simple_repeat 2 54 0 3303 227 50 120 chr1 183159798 183161462 -99032202 - L1MC4 LINE L1 -5 8037 6489 336 102 0 0 chr1 183161462 183161511 -99032153 - U5 snRNA snRNA -67 49 1 217 175 35 35 chr1 183161783 183161840 -99031824 + GA-rich Low_complexity Low_complexity 1 57 0 2656 229 92 10 chr1 183161860 183162568 -99031096 - L2 LINE L2 -776 2538 1773 386 278 30 8 chr1 183163227 183163360 -99030304 - MER117 DNA MER1_type -61 136 1 200 262 74 66 chr1 183163852 183163974 -99029690 + MIR3 SINE MIR 54 176 -32 240 367 101 0 chr1 183164663 183164772 -99028892 + MIR3 SINE MIR 57 176 -32 2230 119 0 0 chr1 183165076 183165369 -99028295 - AluSx SINE Alu -19 293 1 2623 58 0 0 chr1 183165693 183166004 -99027660 - AluY SINE Alu 0 311 1 223 71 48 0 chr1 183166014 183166056 -99027608 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1342 157 4 30 chr1 183166061 183166291 -99027373 - AluJo SINE Alu -32 280 57 317 308 145 12 chr1 183167676 183167994 -99025670 - LTR50 LTR ERVL -322 473 1 1894 222 105 52 chr1 183168111 183168717 -99024947 - MLT1G LTR MaLR 0 590 3 197 324 40 14 chr1 183168725 183168799 -99024865 + L2 LINE L2 3197 3272 0 183 184 0 0 chr1 183169071 183169109 -99024555 + (CATA)n Simple_repeat Simple_repeat 4 41 0 22 56 0 0 chr1 183170001 183170037 -99023627 + AT_rich Low_complexity Low_complexity 1 36 0 529 337 122 27 chr1 183170055 183170423 -99023241 + L2 LINE L2 2472 2874 -440 361 326 62 53 chr1 183170445 183170672 -99022992 + L2 LINE L2 2827 3055 -217 27 0 0 0 chr1 183170716 183170743 -99022921 + AT_rich Low_complexity Low_complexity 1 27 0 1137 240 139 84 chr1 183170743 183171298 -99022366 - L1MC4a LINE L1 -1886 5922 5326 2127 97 0 41 chr1 183171298 183171617 -99022047 - AluSq SINE Alu -7 306 1 1137 240 139 84 chr1 183171617 183171695 -99021969 - L1MC4a LINE L1 -2482 5326 5254 1863 253 75 16 chr1 183171981 183172605 -99021059 - L1MC4 LINE L1 -142 7900 7240 869 182 37 21 chr1 183172607 183172794 -99020870 - L1MC4 LINE L1 -953 7089 6900 250 319 9 35 chr1 183173035 183173151 -99020513 - L1MC4a LINE L1 -1134 5012 4900 270 351 64 35 chr1 183173351 183173775 -99019889 - L1ME LINE L1 -460 5702 5267 370 340 97 8 chr1 183173802 183174070 -99019594 - L1ME LINE L1 -900 5246 4955 275 287 66 0 chr1 183174167 183174303 -99019361 - L1ME LINE L1 -1624 4522 4378 27 36 0 36 chr1 183174303 183174337 -99019327 + AT_rich Low_complexity Low_complexity 1 34 -20 2648 109 5 30 chr1 183174337 183174768 -99018896 - L1MA1 LINE L1 0 6302 5883 27 36 0 36 chr1 183174768 183174789 -99018875 + AT_rich Low_complexity Low_complexity 34 54 0 24 53 0 0 chr1 183175332 183175370 -99018294 + AT_rich Low_complexity Low_complexity 1 38 0 258 200 0 0 chr1 183175379 183175434 -99018230 - L1M LINE L1 -986 5373 5319 26 50 0 0 chr1 183175604 183175644 -99018020 + AT_rich Low_complexity Low_complexity 1 40 0 1866 149 0 3 chr1 183175859 183176180 -99017484 + AluSx SINE Alu 1 320 0 507 56 0 0 chr1 183176394 183176465 -99017199 + (TG)n Simple_repeat Simple_repeat 2 72 0 201 74 0 0 chr1 183178654 183178681 -99014983 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2334 89 3 0 chr1 183179240 183179533 -99014131 - AluSc SINE Alu -13 296 3 757 167 8 15 chr1 183179812 183179944 -99013720 - FLAM_C SINE Alu -2 131 1 424 281 41 0 chr1 183180344 183180465 -99013199 - MIR SINE MIR -135 127 2 181 307 40 27 chr1 183180481 183180556 -99013108 - L2 LINE L2 -84 3229 3154 362 179 77 149 chr1 183180638 183180833 -99012831 - MIR SINE MIR 0 262 82 580 229 14 0 chr1 183182088 183182228 -99011436 - L1P LINE L1 -1878 4268 4127 6891 176 37 3 chr1 183182472 183183663 -99010001 + L1PA15 LINE L1 3961 5195 -970 1979 124 8 0 chr1 183183663 183183930 -99009734 + AluSx SINE Alu 1 269 -43 6891 176 37 3 chr1 183183930 183184936 -99008728 + L1PA15 LINE L1 5195 6165 0 5755 102 21 11 chr1 183185489 183186350 -99007314 - Tigger4(Zombi) DNA MER2_type 0 2731 1862 674 169 19 6 chr1 183186341 183186489 -99007175 - Tigger4(Zombi) DNA MER2_type -2576 155 2 * 213 94 0 0 chr1 183186691 183186723 -99006941 + (T)n Simple_repeat Simple_repeat 1 32 0 862 184 134 17 chr1 183186723 183186902 -99006762 - AluJo SINE Alu -112 200 1 2538 20 3 0 chr1 183189174 183189470 -99004194 - L1PA3 LINE L1 0 6155 5859 21 57 0 0 chr1 183189578 183189613 -99004051 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr1 183190046 183190097 -99003567 + AT_rich Low_complexity Low_complexity 1 51 0 1183 222 14 34 chr1 183191256 183191549 -99002115 - LTR40c LTR ERVL -176 289 3 2263 138 0 3 chr1 183192210 183192522 -99001142 - AluSx SINE Alu 0 312 2 23 33 0 0 chr1 183192533 183192563 -99001101 + AT_rich Low_complexity Low_complexity 1 30 0 658 271 51 80 chr1 183192708 183192910 -99000754 - L1MC4a LINE L1 -1786 6022 5816 1351 177 50 43 chr1 183192910 183193212 -99000452 - AluJo SINE Alu 0 306 3 658 271 51 80 chr1 183193212 183193391 -99000273 - L1MC4a LINE L1 -1992 5816 5653 7007 48 46 0 chr1 183193391 183194310 -98999354 - L1PA5 LINE L1 -3 6151 5221 658 271 51 80 chr1 183194310 183194413 -98999251 - L1MC4a LINE L1 -2155 5653 5549 2223 134 132 5 chr1 183194479 183194859 -98998805 - MSTA LTR MaLR 0 428 1 2297 165 76 13 chr1 183194963 183195246 -98998418 - L1MB7 LINE L1 -9 6175 5893 495 258 27 36 chr1 183195246 183195467 -98998197 - L1PA6 LINE L1 -291 5863 5645 660 243 15 67 chr1 183195871 183196014 -98997650 - L1MC4 LINE L1 0 8042 7918 831 50 25 0 chr1 183196014 183196135 -98997529 + (TCCA)n Simple_repeat Simple_repeat 4 127 0 660 243 15 67 chr1 183196135 183196258 -98997406 - L1MC4 LINE L1 -124 7918 7790 183 368 29 0 chr1 183196320 183196388 -98997276 - MIR SINE MIR -69 193 124 276 263 40 0 chr1 183196496 183196572 -98997092 + MIR SINE MIR 169 247 -15 1980 127 3 32 chr1 183197549 183197857 -98995807 - AluSx SINE Alu -13 299 1 26 0 0 0 chr1 183200775 183200801 -98992863 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr1 183200851 183200873 -98992791 + AT_rich Low_complexity Low_complexity 1 22 0 2654 7 3 3 chr1 183202756 183203051 -98990613 - AluYa5 SINE Alu -16 295 1 297 0 0 0 chr1 183203144 183203177 -98990487 + (TG)n Simple_repeat Simple_repeat 2 34 0 29 60 0 0 chr1 183203532 183203582 -98990082 + AT_rich Low_complexity Low_complexity 1 50 0 239 258 181 44 chr1 183203817 183203999 -98989665 + MER112 DNA MER1_type 2 208 -52 254 340 13 93 chr1 183204038 183204188 -98989476 - MIR3 SINE MIR -49 159 22 2446 71 10 7 chr1 183204235 183204543 -98989121 - AluSp SINE Alu -4 309 1 1985 150 3 0 chr1 183205544 183205850 -98987814 - AluJo SINE Alu -5 307 1 1606 167 12 0 chr1 183206050 183206302 -98987362 + AluJo SINE Alu 31 285 -27 186 43 0 0 chr1 183206302 183206325 -98987339 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 199 260 0 20 chr1 183206875 183206925 -98986739 + MIR SINE MIR 27 75 -133 22 0 0 0 chr1 183207244 183207266 -98986398 + AT_rich Low_complexity Low_complexity 1 22 0 282 143 0 0 chr1 183207861 183207910 -98985754 + (TG)n Simple_repeat Simple_repeat 2 50 0 2278 86 0 13 chr1 183208180 183208482 -98985182 + AluY SINE Alu 6 303 -8 208 357 97 32 chr1 183209303 183209704 -98983960 - L2 LINE L2 -684 2630 2204 21 36 0 0 chr1 183210252 183210280 -98983384 + AT_rich Low_complexity Low_complexity 1 28 0 2128 106 11 0 chr1 183210830 183211113 -98982551 + AluSc SINE Alu 1 286 -23 22 0 0 0 chr1 183211283 183211305 -98982359 + AT_rich Low_complexity Low_complexity 1 22 0 592 347 201 15 chr1 183211866 183212890 -98980774 - L2 LINE L2 -252 3020 1807 326 274 105 83 chr1 183212951 183213228 -98980436 - L2 LINE L2 -77 3236 2954 1005 163 43 60 chr1 183213407 183213689 -98979975 - Charlie1 DNA MER1_type -1 2760 2484 619 241 35 0 chr1 183214001 183214146 -98979518 - Charlie1 DNA MER1_type -269 2492 2343 501 291 147 26 chr1 183214227 183214533 -98979131 - L1MC/D LINE L1 -2027 5781 5439 329 287 28 0 chr1 183214539 183214647 -98979017 + L2 LINE L2 2874 2984 -329 225 108 0 0 chr1 183214674 183214711 -98978953 + L1PA11 LINE L1 6133 6169 -5 22 0 0 0 chr1 183214741 183214763 -98978901 + AT_rich Low_complexity Low_complexity 1 22 0 624 213 197 35 chr1 183214763 183215017 -98978647 + L2 LINE L2 3019 3313 0 286 308 0 0 chr1 183215138 183215216 -98978448 - L2 LINE L2 -7 3306 3229 3066 189 40 96 chr1 183215327 183215445 -98978219 - MER21B LTR ERV1 -58 805 682 1403 183 136 4 chr1 183215445 183215702 -98977962 - AluJb SINE Alu -11 291 1 3066 189 40 96 chr1 183215702 183216436 -98977228 - MER21B LTR ERV1 -181 682 1 2389 84 0 3 chr1 183217292 183217591 -98976073 - AluSg SINE Alu -12 298 1 590 302 82 82 chr1 183218580 183219210 -98974454 + L1MEd LINE L1 5 634 -5485 3241 40 5 198 chr1 183219243 183219550 -98974114 + L1PA5 LINE L1 2235 2493 -3653 881 62 0 0 chr1 183219550 183219663 -98974001 - AluY SINE Alu -2 309 197 3241 40 5 198 chr1 183219663 183219874 -98973790 + L1PA5 LINE L1 2493 2743 -3403 13830 34 5 0 chr1 183219874 183222318 -98971346 + L1PA5 LINE L1 3699 6154 0 360 244 105 80 chr1 183222327 183222651 -98971013 + L1MEd LINE L1 658 989 -5130 16162 51 1 1 chr1 183222651 183224635 -98969029 + L1P LINE L1 22 2005 -4141 3111 229 24 4 chr1 183224632 183225130 -98968534 + L1PA4 LINE L1 5640 6147 -8 * 373 234 0 24 chr1 183225138 183225262 -98968402 + L1MEd LINE L1 967 1087 -5032 696 169 22 22 chr1 183225268 183225404 -98968260 + L1MC4a LINE L1 7273 7408 -400 1335 226 58 10 chr1 183225413 183225705 -98967959 - AluJo SINE Alu -6 306 1 267 318 68 61 chr1 183225716 183225848 -98967816 + MER5B DNA MER1_type 46 178 0 447 246 223 66 chr1 183228148 183228359 -98965305 - MIR SINE MIR -6 256 13 1326 245 78 9 chr1 183228680 183229011 -98964653 - MLT1G1 LTR MaLR -5 590 237 1066 242 90 68 chr1 183229569 183229722 -98963942 - L2 LINE L2 -109 3204 3056 1583 187 3 37 chr1 183229722 183230022 -98963642 - AluJb SINE Alu -22 290 1 1066 242 90 68 chr1 183230022 183230428 -98963236 - L2 LINE L2 -257 3056 2652 419 325 42 21 chr1 183230475 183230666 -98962998 - MIR SINE MIR -57 205 11 2884 91 6 2 chr1 183232620 183233108 -98960556 + L1PB1 LINE L1 5550 6150 -1 3456 171 56 5 chr1 183233117 183233707 -98959957 - MER6 DNA MER2_type -245 620 1 191 347 32 21 chr1 183233713 183233808 -98959856 + L2 LINE L2 3177 3272 0 287 361 0 0 chr1 183233858 183233941 -98959723 + MIR SINE MIR 47 129 -133 400 293 98 18 chr1 183233948 183234112 -98959552 + L3 LINE CR1 366 542 -1035 1072 297 71 81 chr1 183234257 183234859 -98958805 + L3 LINE CR1 804 1399 -178 2094 132 0 26 chr1 183235835 183236145 -98957519 + AluJo SINE Alu 1 302 -10 25 83 0 0 chr1 183237171 183237231 -98956433 + AT_rich Low_complexity Low_complexity 1 60 0 389 264 72 0 chr1 183238897 183239022 -98954642 + MER94 DNA DNA 1 134 0 1423 293 173 31 chr1 183239848 183241052 -98952612 + L2 LINE L2 1943 3313 0 285 29 0 0 chr1 183241487 183241521 -98952143 + (CA)n Simple_repeat Simple_repeat 2 35 0 378 0 0 0 chr1 183241583 183241625 -98952039 + (CA)n Simple_repeat Simple_repeat 2 43 0 1818 158 0 18 chr1 183242979 183243299 -98950365 - AluJo SINE Alu 0 316 2 22 70 0 0 chr1 183243562 183243605 -98950059 + AT_rich Low_complexity Low_complexity 1 43 0 661 284 56 28 chr1 183244290 183244540 -98949124 - L2 LINE L2 -37 3276 3020 396 242 120 30 chr1 183244548 183244911 -98948753 - MLT1J2 LTR MaLR -7 439 24 2272 82 20 3 chr1 183244972 183245265 -98948399 + AluY SINE Alu 1 298 -13 2413 281 155 31 chr1 183245282 183246458 -98947206 - L2 LINE L2 -337 2977 1656 222 235 212 0 chr1 183246551 183246636 -98947028 + MIR3 SINE MIR 105 207 -1 974 226 61 71 chr1 183247849 183248339 -98945325 + L1MEc LINE L1 1616 2100 -4296 981 173 0 24 chr1 183248340 183248508 -98945156 + FRAM SINE Alu 1 163 -13 1305 235 51 21 chr1 183248508 183249071 -98944593 + L1MEc LINE L1 2093 2631 -3584 191 310 0 52 chr1 183249727 183249785 -98943879 + L2 LINE L2 3121 3175 -97 240 35 0 0 chr1 183250792 183250821 -98942843 + (TA)n Simple_repeat Simple_repeat 2 30 0 210 307 53 0 chr1 183251002 183251077 -98942587 - MIR SINE MIR -13 249 171 312 313 169 36 chr1 183251299 183251494 -98942170 + MIR SINE MIR 2 222 -40 221 229 83 0 chr1 183251626 183251674 -98941990 - L2 LINE L2 -16 3256 3205 180 0 0 0 chr1 183251680 183251700 -98941964 + (TAGA)n Simple_repeat Simple_repeat 4 23 0 2452 168 46 13 chr1 183251982 183252561 -98941103 - MER82 DNA MER2_type 0 653 24 343 322 108 23 chr1 183252928 183253142 -98940522 - MIR SINE MIR -3 259 28 180 353 15 44 chr1 183253718 183253786 -98939878 - L2 LINE L2 -12 3260 3195 419 174 0 54 chr1 183254446 183254538 -98939126 - FLAM_C SINE Alu 0 143 57 999 221 111 9 chr1 183254597 183254814 -98938850 - MER8 DNA MER2_type 0 239 1 2234 108 0 3 chr1 183255543 183255840 -98937824 - AluSc SINE Alu -13 296 1 207 0 0 0 chr1 183257126 183257149 -98936515 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1386 153 19 9 chr1 183257152 183257368 -98936296 - AluJo SINE Alu -30 282 65 2484 48 0 3 chr1 183257395 183257687 -98935977 + AluY SINE Alu 1 291 -20 184 356 106 10 chr1 183258858 183258962 -98934702 + L2 LINE L2 3182 3295 -18 222 246 15 0 chr1 183259659 183259724 -98933940 + (TA)n Simple_repeat Simple_repeat 1 66 0 392 305 0 0 chr1 183260280 183260375 -98933289 - MIR SINE MIR -108 154 60 1027 117 0 6 chr1 183261727 183261890 -98931774 + L1PA13 LINE L1 6000 6161 -2 445 315 25 37 chr1 183262059 183262221 -98931443 + MIR3 SINE MIR 42 201 -7 287 175 159 0 chr1 183262473 183262536 -98931128 - MIR SINE MIR -74 188 116 205 344 111 0 chr1 183262612 183262702 -98930962 - MIR SINE MIR -161 101 2 433 333 70 0 chr1 183264149 183264278 -98929386 + L2 LINE L2 3134 3271 -1 8383 189 68 10 chr1 183265419 183267413 -98926251 - Charlie1 DNA MER1_type -231 2530 422 1491 278 148 84 chr1 183267562 183268499 -98925165 - L2 LINE L2 -9 3263 2387 1917 168 3 3 chr1 183268499 183268797 -98924867 - AluSx SINE Alu -14 298 1 1491 278 148 84 chr1 183268797 183269721 -98923943 - L2 LINE L2 -885 2387 1257 284 343 41 73 chr1 183269775 183269994 -98923670 - L2 LINE L2 -52 3220 3009 341 89 0 0 chr1 183270630 183270645 -98923019 - L1MA10 LINE L1 -2 6332 6318 2625 206 85 30 chr1 183270645 183271496 -98922168 - L1ME1 LINE L1 -7 6155 5287 1452 223 55 15 chr1 183271533 183271861 -98921803 - MLT1E LTR MaLR -41 552 212 832 187 36 6 chr1 183271870 183272036 -98921628 - MER21B LTR ERV1 -369 494 324 1454 196 20 0 chr1 183272036 183272383 -98921281 - L1ME1 LINE L1 -868 5278 4925 453 234 39 8 chr1 183273158 183273286 -98920378 + MIR SINE MIR 120 251 -11 453 282 89 35 chr1 183274974 183275176 -98918488 - L2 LINE L2 -2 3311 3099 23 0 0 0 chr1 183275956 183275979 -98917685 + AT_rich Low_complexity Low_complexity 1 23 0 389 301 65 0 chr1 183276087 183276210 -98917454 - L2 LINE L2 -1 3312 3182 287 287 40 40 chr1 183276293 183276394 -98917270 - MIR SINE MIR -27 235 135 683 229 140 35 chr1 183276787 183277102 -98916562 - MER7A DNA MER2_type 0 346 1 467 234 94 8 chr1 183277111 183277239 -98916425 - MIR SINE MIR -122 140 2 2187 107 0 26 chr1 183277453 183277762 -98915902 - AluSx SINE Alu -11 301 1 263 244 167 0 chr1 183279573 183279663 -98914001 + LTR16A LTR ERVL 18 122 -328 756 193 152 0 chr1 183279666 183279863 -98913801 + LTR16A LTR ERVL 224 450 0 264 246 62 0 chr1 183280046 183280111 -98913553 + MER5A DNA MER1_type 95 163 -26 1745 103 4 31 chr1 183280233 183280494 -98913170 + AluSx SINE Alu 58 311 -1 910 167 11 0 chr1 183281176 183281350 -98912314 - MER5B DNA MER1_type -2 176 1 197 82 82 33 chr1 183281646 183281707 -98911957 + GA-rich Low_complexity Low_complexity 5 68 0 186 43 0 0 chr1 183281777 183281800 -98911864 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 249 33 0 0 chr1 183285894 183285924 -98907740 + (TC)n Simple_repeat Simple_repeat 1 30 0 191 36 36 0 chr1 183286284 183286312 -98907352 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 297 307 9 9 chr1 183286804 183286918 -98906746 + LTR67 LTR ERVL 433 546 -11 325 284 46 28 chr1 183287653 183287762 -98905902 - L2 LINE L2 0 3272 3162 1426 174 73 48 chr1 183289467 183289492 -98904172 - MLT1A1 LTR MaLR 0 365 342 3026 185 98 31 chr1 183289492 183290266 -98903398 - LTR1B LTR ERV1 0 826 1 1426 174 73 48 chr1 183290266 183290463 -98903201 - MLT1A1 LTR MaLR -23 342 128 2279 117 0 0 chr1 183290463 183290772 -98902892 - AluSq SINE Alu -4 309 1 1426 174 73 48 chr1 183290772 183290904 -98902760 - MLT1A1 LTR MaLR -237 128 1 311 281 20 46 chr1 183290904 183291057 -98902607 + L1MC5 LINE L1 7371 7519 -442 716 158 27 7 chr1 183291076 183291222 -98902442 + L1MD3 LINE L1 7837 7985 -10 228 67 0 0 chr1 183291225 183291255 -98902409 + (GGAGA)n Simple_repeat Simple_repeat 5 34 0 310 308 133 4 chr1 183291259 183291493 -98902171 + L1MC4 LINE L1 7614 7877 -165 1686 182 0 24 chr1 183291528 183291842 -98901822 + AluJo SINE Alu 1 307 0 288 248 26 17 chr1 183291842 183291959 -98901705 + L1MC5 LINE L1 7808 7925 -36 432 206 89 56 chr1 183292036 183292203 -98901461 - MIR SINE MIR -67 141 18 317 249 119 21 chr1 183292378 183292552 -98901112 - MIR SINE MIR -37 225 41 453 239 247 25 chr1 183292744 183293063 -98900601 + L2 LINE L2 2931 3313 0 231 246 33 0 chr1 183293274 183293335 -98900329 - MIR SINE MIR -58 150 88 24 32 0 0 chr1 183294920 183294951 -98898713 + AT_rich Low_complexity Low_complexity 1 31 0 235 222 0 0 chr1 183294953 183294998 -98898666 + (CA)n Simple_repeat Simple_repeat 2 46 0 455 310 121 6 chr1 183295717 183295891 -98897773 + MIR SINE MIR 13 206 -56 272 314 85 17 chr1 183296853 183296971 -98896693 + L2 LINE L2 3133 3258 -14 1728 193 98 50 chr1 183298679 183299161 -98894503 + MLT1D LTR MaLR 1 505 0 364 309 201 28 chr1 183300026 183300741 -98892923 + L2 LINE L2 2004 2842 -472 306 206 27 14 chr1 183300742 183300815 -98892849 - Charlie8 DNA MER1_type -989 1428 1355 244 250 19 0 chr1 183300884 183300936 -98892728 - Charlie8 DNA MER1_type -2363 54 2 4684 183 64 25 chr1 183300998 183301792 -98891872 + MER45B DNA AcHobo 1 843 -738 16471 107 20 8 chr1 183301792 183302893 -98890771 - Tigger1 DNA MER2_type 0 2418 1331 2138 105 0 3 chr1 183302893 183303179 -98890485 + AluSx SINE Alu 1 285 -27 16471 107 20 8 chr1 183303179 183304467 -98889197 - Tigger1 DNA MER2_type -1087 1331 1 4684 183 64 25 chr1 183304467 183304652 -98889012 + MER45B DNA AcHobo 843 1019 -21 245 167 91 0 chr1 183307643 183307709 -98885955 + MER45B DNA AcHobo 854 925 -115 305 193 174 28 chr1 183307787 183307896 -98885768 - MIR3 SINE MIR -83 125 1 2330 83 0 0 chr1 183308316 183308618 -98885046 + AluY SINE Alu 1 302 -9 274 276 0 76 chr1 183308618 183308714 -98884950 + L2 LINE L2 2992 3081 -191 207 360 0 13 chr1 183308929 183309004 -98884660 + L2 LINE L2 3190 3263 -9 548 295 122 18 chr1 183310128 183310609 -98883055 - L2 LINE L2 -65 3248 2718 800 200 85 13 chr1 183310612 183310847 -98882817 + L1M4 LINE L1 5079 5330 -816 229 354 31 0 chr1 183310849 183310979 -98882685 - L2 LINE L2 -618 2696 2563 236 206 48 0 chr1 183311007 183311070 -98882594 + GA-rich Low_complexity Low_complexity 3 68 0 372 274 47 19 chr1 183311222 183311328 -98882336 + MIR3 SINE MIR 85 193 -15 285 174 0 0 chr1 183311345 183311391 -98882273 - MIR SINE MIR -87 121 76 1015 181 46 45 chr1 183311913 183312161 -98881503 - MIR SINE MIR -21 241 3 299 330 164 15 chr1 183312322 183312690 -98880974 + L2 LINE L2 2679 3090 -182 957 196 128 70 chr1 183312776 183313134 -98880530 + MLT1J LTR MaLR 133 511 0 484 219 165 12 chr1 183314404 183314568 -98879096 - MIR SINE MIR -14 248 60 214 247 93 27 chr1 183316819 183316943 -98876721 + MIR SINE MIR 21 153 -109 547 168 8 96 chr1 183317046 183317113 -98876551 + MER94 DNA DNA 11 64 -70 1643 144 16 50 chr1 183317113 183317432 -98876232 + AluJo SINE Alu 1 308 -4 547 168 8 96 chr1 183317432 183317489 -98876175 + MER94 DNA DNA 64 124 -10 1592 263 19 54 chr1 183318432 183318523 -98875141 + L2 LINE L2 2700 2793 -520 1957 100 61 71 chr1 183318523 183318561 -98875103 + THE1C LTR MaLR 1 38 -337 2004 117 0 0 chr1 183318561 183318869 -98874795 - AluSg SINE Alu 0 308 1 1957 100 61 71 chr1 183318869 183319208 -98874456 + THE1C LTR MaLR 38 375 0 1592 263 19 54 chr1 183319208 183319742 -98873922 + L2 LINE L2 2793 3308 -5 240 339 25 59 chr1 183319743 183319861 -98873803 - MIR SINE MIR -71 137 24 183 265 133 12 chr1 183320067 183320150 -98873514 + MIR3 SINE MIR 111 203 -5 192 213 173 13 chr1 183320777 183320852 -98872812 - MIR SINE MIR -38 224 138 1407 193 41 0 chr1 183321710 183322010 -98871654 - AluJb SINE Alu 0 311 1 180 188 0 0 chr1 183322733 183322765 -98870899 - L2 LINE L2 -1892 1422 1391 1657 200 70 48 chr1 183322791 183323247 -98870417 - MER31B LTR ERV1 0 466 1 1819 120 4 8 chr1 183323627 183323894 -98869770 - AluSp SINE Alu -14 299 34 32 43 0 0 chr1 183324365 183324411 -98869253 + AT_rich Low_complexity Low_complexity 1 46 0 463 202 114 18 chr1 183325029 183325143 -98868521 - L2 LINE L2 0 3313 3189 2961 125 22 0 chr1 183325287 183325704 -98867960 - MSTB1 LTR MaLR -6 426 1 494 297 35 14 chr1 183327278 183327423 -98866241 - L2 LINE L2 -17 3255 3108 2169 84 3 0 chr1 183328672 183328983 -98864681 + AluSp SINE Alu 1 312 0 2272 74 0 26 chr1 183329201 183329512 -98864152 + AluSx SINE Alu 2 304 -8 904 228 103 22 chr1 183331940 183332251 -98861413 + L1MC4 LINE L1 7707 8042 0 679 251 68 107 chr1 183332612 183333023 -98860641 + L2 LINE L2 2919 3313 0 718 239 97 13 chr1 183333038 183333264 -98860400 - MER20B DNA MER1_type -189 594 350 672 233 81 23 chr1 183333275 183333447 -98860217 + MIR SINE MIR 11 192 -70 848 248 124 16 chr1 183333492 183333750 -98859914 - MER20B DNA MER1_type -439 344 59 192 77 0 0 chr1 183336659 183336685 -98856979 + (CA)n Simple_repeat Simple_repeat 1 26 0 467 333 51 51 chr1 183336957 183337212 -98856452 + L3b LINE CR1 1240 1494 -89 201 167 0 28 chr1 183337387 183337423 -98856241 + MIR3 SINE MIR 151 185 -23 1608 154 16 26 chr1 183338479 183338785 -98854879 + AluSx SINE Alu 1 303 -9 1201 157 108 46 chr1 183338968 183339273 -98854391 + MER33 DNA MER1_type 1 324 0 2354 96 0 0 chr1 183339863 183340175 -98853489 - AluSx SINE Alu 0 312 1 940 159 57 13 chr1 183341202 183341359 -98852305 + MER6A DNA MER2_type 1 164 -441 * 1764 120 88 3 chr1 183341356 183341664 -98852000 + MER6A DNA MER2_type 255 588 -17 849 124 20 26 chr1 183342500 183342653 -98851011 - L1PA16 LINE L1 0 6166 6015 503 78 13 13 chr1 183342650 183342727 -98850937 + L1M LINE L1 5335 5411 -773 4102 248 107 41 chr1 183342727 183343957 -98849707 - Charlie1a DNA MER1_type -108 1347 36 587 287 128 19 chr1 183344042 183344300 -98849364 - L2 LINE L2 -31 3282 2997 248 51 0 26 chr1 183344409 183344448 -98849216 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 22 0 0 0 chr1 183344958 183344980 -98848684 + AT_rich Low_complexity Low_complexity 1 22 0 753 239 32 32 chr1 183345001 183345189 -98848475 - MIR SINE MIR -64 198 11 409 307 24 54 chr1 183345204 183345398 -98848266 + MER5A DNA MER1_type 1 178 0 2034 131 0 0 chr1 183345663 183345938 -98847726 + AluSx SINE Alu 1 275 -37 266 67 22 0 chr1 183345942 183345987 -98847677 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 180 0 0 0 chr1 183345987 183346007 -98847657 + (CA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 183346643 183346664 -98847000 + AT_rich Low_complexity Low_complexity 1 21 0 2403 74 0 6 chr1 183347179 183347490 -98846174 - AluY SINE Alu -2 309 1 331 171 143 0 chr1 183347766 183347836 -98845828 + MER116 DNA Mariner 1 80 0 1631 249 71 41 chr1 183350398 183350888 -98842776 - MLT1J LTR MaLR -6 505 1 234 209 60 90 chr1 183350941 183351008 -98842656 + L2 LINE L2 3203 3267 -5 2413 71 0 0 chr1 183351015 183351309 -98842355 + AluY SINE Alu 1 294 -17 527 224 34 41 chr1 183353216 183353363 -98840301 - MIR3 SINE MIR -42 166 21 253 241 19 0 chr1 183353418 183353472 -98840192 + L2 LINE L2 3218 3272 0 1842 365 62 45 chr1 183355541 183356712 -98836952 + L2 LINE L2 366 1555 -1759 735 207 5 78 chr1 183356683 183356876 -98836788 + MIR SINE MIR 49 227 -35 * 963 273 66 81 chr1 183356948 183357089 -98836575 + L2 LINE L2 1533 1675 -1639 1713 168 13 10 chr1 183357089 183357387 -98836277 - AluJo SINE Alu -13 299 1 963 273 66 81 chr1 183357387 183357717 -98835947 + L2 LINE L2 1675 1997 -1317 1092 258 69 24 chr1 183357730 183358223 -98835441 - L1MC4 LINE L1 0 8042 7528 730 235 6 0 chr1 183358206 183358372 -98835292 - L1ME1 LINE L1 -6 6160 5994 * 231 301 115 9 chr1 183358381 183358494 -98835170 + L2 LINE L2 1978 2102 -1212 * 239 243 14 95 chr1 183358491 183358565 -98835099 + L2 LINE L2 3204 3271 -42 1794 145 32 46 chr1 183358714 183358887 -98834777 - MER46B DNA MER2_type -2515 216 174 2448 61 0 3 chr1 183358887 183359184 -98834480 - AluY SINE Alu -15 296 1 1794 145 32 46 chr1 183359184 183359355 -98834309 - MER46B DNA MER2_type -2557 174 2 30 45 0 0 chr1 183359700 183359744 -98833920 + AT_rich Low_complexity Low_complexity 1 44 0 186 43 0 0 chr1 183361737 183361760 -98831904 + (TC)n Simple_repeat Simple_repeat 2 24 0 2481 67 0 0 chr1 183361760 183362058 -98831606 - AluY SINE Alu -13 298 1 340 338 104 15 chr1 183362185 183362386 -98831278 - MLT1J LTR MaLR -193 318 100 406 112 41 0 chr1 183362436 183362509 -98831155 - AluS SINE Alu -241 62 1 205 339 124 44 chr1 183362758 183363121 -98830543 - L2 LINE L2 -550 2764 2373 189 0 0 0 chr1 183363460 183363481 -98830183 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 374 335 35 65 chr1 183363527 183363787 -98829877 + L2 LINE L2 2600 2851 -463 670 276 80 64 chr1 183363822 183364428 -98829236 - L2 LINE L2 0 3313 2688 266 317 42 17 chr1 183364431 183364551 -98829113 + L2 LINE L2 2935 3057 -215 200 231 93 111 chr1 183366304 183366412 -98827252 - L3 LINE CR1 -8 1569 1464 509 336 203 11 chr1 183366472 183366916 -98826748 - L3 LINE CR1 -246 1331 803 352 276 30 60 chr1 183367072 183367206 -98826458 + L2 LINE L2 3183 3312 -1 528 333 58 21 chr1 183367477 183367720 -98825944 - L2 LINE L2 -470 2844 2593 1538 200 156 38 chr1 183367756 183368231 -98825433 - MLT1F LTR MaLR -9 533 3 286 297 95 14 chr1 183368614 183368762 -98824902 - MIR3 SINE MIR -4 204 45 910 123 0 0 chr1 183368854 183368976 -98824688 - FLAM_C SINE Alu -21 122 1 186 162 27 27 chr1 183369107 183369144 -98824520 + MIR SINE MIR 67 103 -159 327 263 58 36 chr1 183369522 183369659 -98824005 - MIR SINE MIR -14 248 109 214 341 12 12 chr1 183370545 183370627 -98823037 - L2 LINE L2 -21 3292 3211 351 194 0 0 chr1 183370678 183370740 -98822924 - LTR67 LTR ERVL 0 557 496 548 285 78 66 chr1 183370812 183371145 -98822519 - LTR67 LTR ERVL -202 355 19 482 279 85 20 chr1 183371427 183371610 -98822054 + MIR3 SINE MIR 8 199 -9 1916 116 67 3 chr1 183372398 183372682 -98820982 - AluSx SINE Alu -10 302 1 214 305 203 38 chr1 183372698 183372934 -98820730 - L3b LINE CR1 -107 1476 1202 494 142 143 3 chr1 183372985 183373132 -98820532 - L1MB8 LINE L1 -6 6172 5989 1055 152 43 5 chr1 183373139 183373349 -98820315 - L1MB8 LINE L1 -743 5403 5186 1758 258 75 30 chr1 183373961 183374524 -98819140 - MLT1E LTR MaLR -5 588 1 347 327 138 25 chr1 183375036 183375311 -98818353 + L2 LINE L2 2761 3061 -252 1449 198 54 4 chr1 183376471 183376749 -98816915 + MLT1A1 LTR MaLR 74 365 0 465 118 53 0 chr1 183376781 183376857 -98816807 + MADE1 DNA Mariner 1 80 0 628 353 188 17 chr1 183377000 183377476 -98816188 - L3 LINE CR1 -115 1462 1069 1236 88 0 17 chr1 183377476 183377657 -98816007 - L1MA1 LINE L1 0 6302 6125 628 353 188 17 chr1 183377657 183377892 -98815772 - L3 LINE CR1 -508 1069 629 978 231 151 45 chr1 183377892 183378337 -98815327 + L2 LINE L2 2236 2727 -587 1254 116 0 35 chr1 183378337 183378535 -98815129 + AluSg/x SINE Alu 114 304 -6 739 174 29 7 chr1 183378603 183378741 -98814923 + MLT1A1 LTR MaLR 12 152 -213 2549 50 0 0 chr1 183378747 183379065 -98814599 + L1PA7 LINE L1 5835 6152 -2 919 232 12 79 chr1 183379065 183379383 -98814281 + L2 LINE L2 2717 3017 -255 539 241 76 19 chr1 183380046 183380204 -98813460 + L2 LINE L2 1689 1855 -1459 490 258 210 33 chr1 183380312 183380583 -98813081 + L2 LINE L2 2259 2577 -737 2366 73 0 20 chr1 183380875 183381177 -98812487 - AluSc SINE Alu -13 296 1 220 224 0 20 chr1 183381355 183381404 -98812260 + L2 LINE L2 3262 3309 -4 320 176 235 0 chr1 183382747 183382832 -98810832 - MIR SINE MIR -31 231 127 250 260 115 19 chr1 183433164 183433268 -98760396 - MIR SINE MIR -39 223 110 242 330 45 27 chr1 183433829 183433941 -98759723 - L2 LINE L2 -1 3271 3158 224 295 0 108 chr1 183434168 183434307 -98759357 - L2 LINE L2 -22 3291 3168 275 403 100 3 chr1 183434504 183434814 -98758850 - L2 LINE L2 -337 2977 2638 390 255 39 20 chr1 183434993 183435095 -98758569 + MER91C DNA MER1_type 26 129 -11 445 316 118 11 chr1 183435712 183436067 -98757597 - L2 LINE L2 -453 2861 2469 533 254 28 7 chr1 183436953 183437095 -98756569 + MIR SINE MIR 21 165 -97 259 354 37 0 chr1 183437321 183437419 -98756245 + MIR SINE MIR 28 130 -78 1306 160 47 54 chr1 183438536 183438878 -98754786 + MSTD LTR MaLR 1 396 0 493 287 65 42 chr1 183438879 183439095 -98754569 - MIR SINE MIR -40 222 2 381 237 73 85 chr1 183439224 183439401 -98754263 + MIR3 SINE MIR 27 201 -7 400 303 138 15 chr1 183439929 183440124 -98753540 - MIR SINE MIR -41 221 3 260 279 0 0 chr1 183440168 183440229 -98753435 - MER113 DNA MER1_type? 0 521 461 183 302 19 0 chr1 183440450 183440503 -98753161 - L3 LINE CR1 -504 1073 1020 236 242 121 20 chr1 183440777 183440876 -98752788 + MER102b DNA MER1_type 233 341 0 2215 97 10 0 chr1 183441101 183441410 -98752254 + AluSx SINE Alu 1 312 0 200 289 118 43 chr1 183441464 183441651 -98752013 + L2 LINE L2 2309 2509 -805 248 310 49 35 chr1 183442355 183442558 -98751106 - L2 LINE L2 -1928 1386 1181 209 371 52 0 chr1 183442564 183442661 -98751003 + L2 LINE L2 2994 3095 -177 782 188 0 8 chr1 183442663 183442791 -98750873 + FLAM_A SINE Alu 1 127 -6 1568 205 115 34 chr1 183443605 183444048 -98749616 + MLT1D LTR MaLR 27 505 0 1084 298 28 58 chr1 183444905 183445503 -98748161 + L1MEc LINE L1 34 613 -5783 756 250 40 40 chr1 183445538 183445738 -98747926 - MER63A DNA MER1_type 0 210 11 1371 202 79 102 chr1 183445751 183446222 -98747442 + MER21B LTR ERV1 4 463 -400 1569 201 105 48 chr1 183446361 183446798 -98746866 - MLT1C LTR MaLR 0 467 6 362 288 78 82 chr1 183446962 183447251 -98746413 + MLT1L LTR MaLR 2 291 -324 1940 99 0 86 chr1 183447251 183447589 -98746075 + AluSq SINE Alu 1 311 0 362 288 78 82 chr1 183447589 183447711 -98745953 + MLT1L LTR MaLR 291 412 -203 2370 90 0 13 chr1 183448056 183448366 -98745298 - AluSc SINE Alu -3 306 1 349 331 31 8 chr1 183449194 183449324 -98744340 - MIR SINE MIR -110 152 20 279 273 30 0 chr1 183449330 183449396 -98744268 - MER113 DNA MER1_type? -1 520 453 849 225 170 4 chr1 183450284 183450560 -98743104 - L1M4 LINE L1 -1830 4316 3995 411 236 63 31 chr1 183450560 183450687 -98742977 - MIR SINE MIR -64 198 68 189 257 135 0 chr1 183450768 183450842 -98742822 - L2 LINE L2 -2 3311 3228 2079 142 10 3 chr1 183451325 183451662 -98742002 - AluJb SINE Alu 0 339 1 223 278 0 42 chr1 183451692 183451764 -98741900 + L3 LINE CR1 1509 1577 0 1911 156 3 3 chr1 183452272 183452560 -98741104 + AluSx SINE Alu 1 288 -24 372 43 0 0 chr1 183452560 183452606 -98741058 + (TA)n Simple_repeat Simple_repeat 2 47 0 200 240 131 104 chr1 183452674 183452857 -98740807 + MER5A DNA MER1_type 2 189 0 2733 161 50 18 chr1 183452904 183453293 -98740371 + L1MD2 LINE L1 5704 6114 -245 1436 109 275 0 chr1 183453293 183453522 -98740142 - AluSx SINE Alu -10 292 1 2733 161 50 18 chr1 183453522 183453636 -98740028 + L1MD2 LINE L1 6114 6223 -136 21 0 0 0 chr1 183454307 183454328 -98739336 + AT_rich Low_complexity Low_complexity 1 21 0 581 291 51 43 chr1 183455166 183455420 -98738244 + MLT1J2 LTR MaLR 74 329 -121 3591 46 7 16 chr1 183455523 183455960 -98737704 + L1PA7 LINE L1 5716 6148 -6 490 126 11 46 chr1 183455977 183456064 -98737600 + MLT1J2 LTR MaLR 367 450 0 197 234 21 0 chr1 183456339 183456386 -98737278 + L2 LINE L2 3258 3305 -8 2190 97 6 35 chr1 183457091 183457410 -98736254 - AluSg SINE Alu 0 310 1 345 286 31 0 chr1 183457767 183457865 -98735799 + MIR SINE MIR 31 131 -77 296 109 0 0 chr1 183457871 183457917 -98735747 - MADE1 DNA Mariner -34 46 1 416 342 13 18 chr1 183459200 183459393 -98734271 + MIR SINE MIR 18 206 -56 265 239 56 0 chr1 183460044 183460115 -98733549 - MIR SINE MIR -1 261 187 2835 147 25 8 chr1 183460125 183460595 -98733069 - L1MB4 LINE L1 0 6180 5703 588 211 37 47 chr1 183460601 183460791 -98732873 - L1MC5 LINE L1 -36 7925 7738 215 210 44 28 chr1 183460792 183460871 -98732793 - MIR SINE MIR -68 140 64 333 47 0 0 chr1 183460887 183460930 -98732734 + (TG)n Simple_repeat Simple_repeat 2 44 0 2430 82 0 0 chr1 183462766 183463072 -98730592 - AluY SINE Alu -5 306 1 1847 143 10 37 chr1 183463079 183463379 -98730285 - AluJb SINE Alu -20 292 1 2294 169 63 16 chr1 183463380 183463825 -98729839 - L1MB4 LINE L1 -40 6140 5675 189 171 0 0 chr1 183464713 183464748 -98728916 + CT-rich Low_complexity Low_complexity 2 36 0 2399 82 0 10 chr1 183465777 183466081 -98727583 - AluSg SINE Alu -9 301 1 1178 22 14 0 chr1 183467155 183467294 -98726370 + AluY SINE Alu 168 308 -3 269 236 115 6 chr1 183467487 183467600 -98726064 + MIR SINE MIR 52 172 -62 2364 97 0 0 chr1 183467668 183467966 -98725698 + AluSq SINE Alu 1 298 -15 485 214 0 54 chr1 183468087 183468199 -98725465 + MIR3 SINE MIR 93 198 -10 22 0 0 0 chr1 183468262 183468284 -98725380 + AT_rich Low_complexity Low_complexity 1 22 0 1981 117 0 91 chr1 183468380 183468721 -98724943 + AluSx SINE Alu 1 310 -2 661 219 129 24 chr1 183469072 183469282 -98724382 + MIR SINE MIR 31 262 0 189 318 0 16 chr1 183469280 183469343 -98724321 - L2 LINE L2 -2 3270 3209 * 348 234 102 147 chr1 183471004 183471466 -98722198 + L1M2 LINE L1 708 1148 -5701 864 199 0 0 chr1 183473090 183473236 -98720428 + FRAM SINE Alu 1 146 -30 495 0 0 0 chr1 183473236 183473291 -98720373 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 343 286 84 39 chr1 183473340 183473518 -98720146 - MER5A DNA MER1_type -3 186 1 488 300 52 6 chr1 183474321 183474509 -98719155 - MIR SINE MIR -56 206 20 2036 113 7 3 chr1 183474629 183474936 -98718728 - AluSp SINE Alu 0 308 1 217 284 68 27 chr1 183475306 183475380 -98718284 - MIR SINE MIR -102 160 84 296 138 169 0 chr1 183475400 183475465 -98718199 - MIR SINE MIR -11 251 176 582 237 32 51 chr1 183475610 183475766 -98717898 - MIR3 SINE MIR -20 188 36 1062 239 174 30 chr1 183475772 183476280 -98717384 - MLT1H1 LTR MaLR -1 554 23 5710 17 0 0 chr1 183476402 183477220 -98716444 - L1PA4 LINE L1 -266 5889 5072 21829 200 56 20 chr1 183477220 183482731 -98710933 - L1PA12 LINE L1 -772 6812 16 1233 246 62 57 chr1 183482926 183483454 -98710210 + L1MC5 LINE L1 5361 5891 -1917 2388 235 119 58 chr1 183483537 183483662 -98710002 + L1MC5 LINE L1 6047 6163 -1798 1691 166 7 35 chr1 183483662 183483952 -98709712 - AluJo SINE Alu -30 282 1 2388 235 119 58 chr1 183483952 183485189 -98708475 + L1MC5 LINE L1 6163 7509 -452 2334 136 26 0 chr1 183485197 183485542 -98708122 - THE1B LTR MaLR -10 354 1 917 230 71 48 chr1 183485542 183485920 -98707744 + L1MC5 LINE L1 7527 7913 -48 329 269 9 19 chr1 183486346 183486454 -98707210 - MIR3 SINE MIR -90 118 12 408 267 86 78 chr1 183487002 183487234 -98706430 - MIR SINE MIR -17 245 12 606 281 206 22 chr1 183487249 183487608 -98706056 - L2 LINE L2 -1 3312 2888 255 319 62 35 chr1 183487872 183487985 -98705679 + L3 LINE CR1 875 990 -587 348 281 123 49 chr1 183488001 183488204 -98705460 + L3 LINE CR1 1342 1559 -18 396 179 60 0 chr1 183489442 183489526 -98704138 - L1M LINE L1 -801 5373 5285 833 155 7 7 chr1 183489532 183489680 -98703984 - L1MB8 LINE L1 -1 6177 6030 1276 103 6 0 chr1 183489684 183489849 -98703815 + AluSx SINE Alu 1 166 -146 3073 150 72 53 chr1 183489849 183490718 -98702946 - L1MB8 LINE L1 -182 6002 5121 845 56 9 0 chr1 183490996 183491103 -98702561 - AluYa5/8 SINE Alu -202 108 1 985 125 0 0 chr1 183491320 183491448 -98702216 - FLAM_C SINE Alu -5 128 1 223 234 234 31 chr1 183491654 183491782 -98701882 - MER5A DNA MER1_type 0 189 36 * 332 214 230 32 chr1 183491678 183491804 -98701860 + MER5A DNA MER1_type 37 187 -2 261 192 19 0 chr1 183491814 183491866 -98701798 - MER5B DNA MER1_type 0 178 126 1528 165 33 15 chr1 183491889 183492220 -98701444 - L1MDa LINE L1 -5169 1361 992 * 2589 220 41 76 chr1 183492214 183492574 -98701090 - L1MDa LINE L1 -5802 738 416 1722 152 61 10 chr1 183492574 183492871 -98700793 - AluJb SINE Alu 0 312 1 2589 220 41 76 chr1 183492871 183493260 -98700404 - L1MDa LINE L1 -6124 416 15 387 312 32 0 chr1 183493731 183493888 -98699776 - MIR SINE MIR -16 246 85 213 350 57 8 chr1 183494128 183494251 -98699413 - L2 LINE L2 -608 2706 2578 362 286 101 0 chr1 183494357 183494476 -98699188 + L2 LINE L2 3142 3272 0 205 327 0 0 chr1 183494977 183495029 -98698635 + L2 LINE L2 3201 3252 -20 472 238 34 136 chr1 183495360 183495566 -98698098 + MIR3 SINE MIR 19 203 -5 516 263 64 23 chr1 183496183 183496354 -98697310 - MER5B DNA MER1_type 0 178 1 652 226 89 119 chr1 183496892 183497286 -98696378 - L1MC4a LINE L1 -1013 6795 6414 2240 198 77 23 chr1 183497397 183497876 -98695788 + MLT1D LTR MaLR 1 505 0 225 284 141 73 chr1 183497921 183498552 -98695112 - HAL1b LINE L1 -613 735 62 459 240 34 128 chr1 183499845 183500049 -98693615 - MIR3 SINE MIR -5 203 19 212 323 165 0 chr1 183500883 183501047 -98692617 - MIR SINE MIR -47 215 25 378 209 47 35 chr1 183501157 183501243 -98692421 - L2 LINE L2 -1 3271 3185 1830 166 13 0 chr1 183501458 183501759 -98691905 - AluJo SINE Alu -7 305 1 1661 173 87 32 chr1 183503057 183503403 -98690261 + MLT1A1 LTR MaLR 1 365 0 444 330 11 9 chr1 183503603 183503789 -98689875 + MIR SINE MIR 21 210 -52 204 387 86 0 chr1 183504033 183504126 -98689538 - L2 LINE L2 -8 3264 3164 * 375 360 40 17 chr1 183504114 183504289 -98689375 - L3 LINE CR1 -75 1502 1324 843 291 90 30 chr1 183504593 183505308 -98688356 - L1ME2 LINE L1 -248 5916 5148 559 256 146 41 chr1 183505319 183505784 -98687880 - L1ME2 LINE L1 -1016 5130 4617 350 202 1 0 chr1 183506413 183506497 -98687167 + L1ME LINE L1 5509 5590 -531 233 184 102 31 chr1 183506480 183506578 -98687086 + L1MC4 LINE L1 6599 6703 -1339 * 278 282 64 45 chr1 183506604 183506806 -98686858 + L1ME LINE L1 5611 5816 -305 2409 115 35 41 chr1 183506872 183507238 -98686426 - THE1B LTR MaLR 0 364 1 189 0 0 0 chr1 183507522 183507543 -98686121 + (T)n Simple_repeat Simple_repeat 1 21 0 477 145 0 0 chr1 183507599 183507675 -98685989 - AluSx SINE Alu -1 311 236 1353 109 49 0 chr1 183507675 183507858 -98685806 - AluSx SINE Alu -120 192 1 316 242 116 0 chr1 183507862 183507957 -98685707 - MIR3 SINE MIR -41 167 62 199 276 86 0 chr1 183507991 183508049 -98685615 + MIR SINE MIR 62 124 -84 278 246 0 0 chr1 183508075 183508132 -98685532 + MIR SINE MIR 205 261 -1 23 33 0 0 chr1 183508887 183508917 -98684747 + AT_rich Low_complexity Low_complexity 1 30 0 2328 127 3 6 chr1 183509038 183509378 -98684286 + L1PB3 LINE L1 5814 6152 -2 2189 104 3 3 chr1 183509429 183509726 -98683938 - AluSq SINE Alu -16 297 1 2222 101 7 0 chr1 183509726 183510033 -98683631 - L1P5 LINE L1 -366 5788 5480 2247 119 0 0 chr1 183510034 183510337 -98683327 - AluSx SINE Alu -9 303 1 4377 171 8 13 chr1 183510337 183511208 -98682456 - L1 LINE L1 -1154 4992 4126 980 218 17 14 chr1 183511224 183511455 -98682209 - L1MC4 LINE L1 -354 7549 7197 * 2075 223 60 58 chr1 183511448 183512151 -98681513 - L1MC4 LINE L1 -748 5398 5176 356 297 36 46 chr1 183512191 183512374 -98681290 - L1MC4 LINE L1 -33 8009 7827 2900 113 28 19 chr1 183512374 183512798 -98680866 - MSTA LTR MaLR 0 428 1 356 297 36 46 chr1 183512798 183512833 -98680831 - L1MC4 LINE L1 -215 7827 7793 350 335 39 45 chr1 183512863 183513194 -98680470 - L1MC4 LINE L1 -939 5207 4879 257 300 83 17 chr1 183514514 183514634 -98679030 + L2 LINE L2 3186 3313 0 608 240 29 41 chr1 183515090 183515261 -98678403 - MIR SINE MIR -84 178 10 212 294 18 73 chr1 183515708 183515817 -98677847 - MER5B DNA MER1_type -24 154 52 278 326 43 35 chr1 183516772 183516913 -98676751 + MIR SINE MIR 75 216 -46 1943 135 17 3 chr1 183519124 183519421 -98674243 + AluSx SINE Alu 1 301 -11 309 341 78 34 chr1 183519856 183520035 -98673629 + L2 LINE L2 2904 3090 -182 27 29 0 0 chr1 183520804 183520838 -98672826 + AT_rich Low_complexity Low_complexity 1 34 0 195 259 56 70 chr1 183521027 183521170 -98672494 - L2 LINE L2 -188 3084 2944 25 0 0 0 chr1 183521187 183521212 -98672452 + AT_rich Low_complexity Low_complexity 1 25 0 190 347 137 0 chr1 183521298 183521393 -98672271 - L2 LINE L2 -19 3294 3187 633 211 28 28 chr1 183523038 183523180 -98670484 - MLT1F1 LTR MaLR -13 554 413 404 217 33 0 chr1 183523789 183523881 -98669783 + MER81 DNA DNA 20 114 0 4235 127 39 3 chr1 183524511 183525275 -98668389 - L1PA16 LINE L1 -19 6147 5194 346 325 113 26 chr1 183525363 183525514 -98668150 - MIR SINE MIR -48 214 51 257 314 35 76 chr1 183525556 183525728 -98667936 + MIR3 SINE MIR 23 187 -21 298 234 76 83 chr1 183526205 183526350 -98667314 - L2 LINE L2 -38 3234 3091 213 321 0 0 chr1 183526400 183526456 -98667208 - MIR SINE MIR -48 214 159 1112 163 160 102 chr1 183526457 183526820 -98666844 - L1M4 LINE L1 -2032 4114 3731 1466 173 0 28 chr1 183527707 183527962 -98665702 - AluJb SINE Alu -64 248 1 212 296 34 34 chr1 183527970 183528058 -98665606 - MIR SINE MIR -74 188 101 326 296 125 26 chr1 183528481 183528633 -98665031 + MIR3 SINE MIR 25 191 -17 216 0 0 0 chr1 183528769 183528793 -98664871 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 193 195 73 0 chr1 183529871 183529912 -98663752 + MIR SINE MIR 108 151 -57 541 310 62 60 chr1 183530105 183530608 -98663056 - L1ME LINE L1 -5486 584 81 1047 153 139 0 chr1 183530612 183530814 -98662850 - L1MC2 LINE L1 -13 6331 6102 419 239 11 0 chr1 183530817 183530909 -98662755 - L1ME LINE L1 -5972 98 6 2484 67 0 10 chr1 183530945 183531257 -98662407 + AluY SINE Alu 1 309 -2 634 316 138 31 chr1 183532302 183532946 -98660718 - L2 LINE L2 -194 3078 2358 26 0 0 0 chr1 183533706 183533732 -98659932 + AT_rich Low_complexity Low_complexity 1 26 0 7114 123 26 30 chr1 183533732 183535656 -98658008 - L1MA3 LINE L1 0 6305 4395 746 144 0 0 chr1 183536874 183536978 -98656686 - AluSq/x SINE Alu -196 117 14 249 182 39 78 chr1 183537222 183537299 -98656365 + LTR66 LTR ERVL 366 439 -171 278 253 0 0 chr1 183537300 183537379 -98656285 - L1MC4 LINE L1 -1350 6692 6614 333 135 0 63 chr1 183537384 183537495 -98656169 + (TA)n Simple_repeat Simple_repeat 1 104 0 21 36 0 0 chr1 183538170 183538198 -98655466 + AT_rich Low_complexity Low_complexity 1 28 0 270 284 92 28 chr1 183538253 183538394 -98655270 - MIR SINE MIR -46 216 67 383 256 49 79 chr1 183538752 183538955 -98654709 - MIR SINE MIR -30 232 36 3498 157 46 3 chr1 183540038 183540643 -98653021 - L1MB2 LINE L1 -2 6169 5539 209 353 95 9 chr1 183541256 183541372 -98652292 + MIR SINE MIR 16 141 -67 212 281 78 0 chr1 183541576 183541640 -98652024 + L2 LINE L2 2988 3056 -257 280 234 125 0 chr1 183541704 183541768 -98651896 + L2 LINE L2 3199 3270 -2 863 74 161 47 chr1 183542830 183542979 -98650685 - MLT1D LTR MaLR -2 503 338 2031 177 13 18 chr1 183543079 183543464 -98650200 - L1MB8 LINE L1 -36 6142 5760 376 259 56 0 chr1 183543677 183543785 -98649879 - L2 LINE L2 -3 3310 3197 548 242 49 86 chr1 183543786 183544030 -98649634 - L2 LINE L2 -234 3079 2845 1827 197 33 0 chr1 183544627 183544992 -98648672 - L1MB4 LINE L1 -17 6163 5787 2328 92 10 0 chr1 183545303 183545596 -98648068 + AluSp SINE Alu 2 297 -16 666 261 27 11 chr1 183545671 183545859 -98647805 - MIR SINE MIR -26 236 46 274 290 75 11 chr1 183546081 183546174 -98647490 + L2 LINE L2 2259 2357 -957 208 327 58 19 chr1 183546741 183546845 -98646819 + L2 LINE L2 2976 3083 -189 207 314 0 0 chr1 183547000 183547070 -98646594 + MIR SINE MIR 176 245 -17 345 253 0 0 chr1 183548311 183548386 -98645278 - MIR SINE MIR -26 236 162 184 354 101 24 chr1 183549880 183550168 -98643496 + L2 LINE L2 2668 2977 -337 934 245 57 4 chr1 183550439 183550684 -98642980 - MIR SINE MIR 0 262 5 2105 107 9 50 chr1 183550867 183551185 -98642479 + AluSp SINE Alu 1 305 -8 187 295 139 0 chr1 183551407 183551529 -98642135 - MIR3 SINE MIR -24 184 46 233 0 62 0 chr1 183552932 183552964 -98640700 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 942 164 0 41 chr1 183553152 183553323 -98640341 - AluSx SINE Alu -20 292 129 437 90 15 0 chr1 183553327 183553394 -98640270 - MADE1 DNA Mariner -1 79 12 674 112 172 0 chr1 183553394 183553510 -98640154 - AluSx SINE Alu -169 144 9 7687 28 7 3 chr1 183553542 183554798 -98638866 + L1PA4 LINE L1 4892 6155 0 8970 169 52 38 chr1 183554800 183556728 -98636936 - L1MC3 LINE L1 -7 7778 5824 1159 81 0 7 chr1 183556728 183556877 -98636787 - AluSc SINE Alu -8 301 154 364 304 14 22 chr1 183556990 183557128 -98636536 - MIR SINE MIR -123 139 3 2330 75 0 0 chr1 183557935 183558254 -98635410 - AluY SINE Alu 0 311 1 1506 222 12 12 chr1 183558313 183558647 -98635017 + MLT1E3 LTR MaLR 291 624 0 775 111 9 0 chr1 183560001 183560109 -98633555 - Tigger1 DNA MER2_type 0 2418 2310 13946 126 23 11 chr1 183560119 183562242 -98631422 - Tigger1 DNA MER2_type -270 2148 1 398 39 19 0 chr1 183562572 183562624 -98631040 - MLT1E2 LTR MaLR -2 624 572 276 53 0 0 chr1 183562769 183562807 -98630857 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1654 186 76 37 chr1 183562878 183563232 -98630432 + MLT1A2 LTR MaLR 6 373 -1 2036 144 3 3 chr1 183563307 183563643 -98630021 - AluJb SINE Alu 0 312 1 710 234 103 26 chr1 183563650 183563962 -98629702 - L1ME4a LINE L1 -218 5903 5568 1981 93 31 48 chr1 183565148 183565460 -98628204 + AluSg SINE Alu 1 307 0 546 255 75 102 chr1 183565889 183566359 -98627305 - L2 LINE L2 0 3313 2857 272 252 223 0 chr1 183566571 183566674 -98626990 - L3 LINE CR1 -273 1304 1179 395 171 13 0 chr1 183566839 183566915 -98626749 - L1PA3 LINE L1 0 6155 6079 2553 122 20 2 chr1 183566948 183567350 -98626314 - L1MA5A LINE L1 -1 6296 5888 1142 170 5 0 chr1 183568527 183568715 -98624949 + MER5A DNA MER1_type 1 189 0 27 49 0 0 chr1 183569159 183569200 -98624464 + AT_rich Low_complexity Low_complexity 1 41 0 274 221 21 105 chr1 183570166 183570261 -98623403 + L2 LINE L2 3186 3272 0 25 31 0 0 chr1 183571493 183571525 -98622139 + AT_rich Low_complexity Low_complexity 1 32 0 207 263 0 18 chr1 183571553 183571610 -98622054 + L2 LINE L2 3217 3272 0 1954 167 91 3 chr1 183572997 183573381 -98620283 - MSTA LTR MaLR -9 419 2 1368 240 52 26 chr1 183573777 183574164 -98619500 - MLT2C1 LTR ERVL 0 397 1 318 186 20 191 chr1 183574660 183574859 -98618805 - L2 LINE L2 -44 3269 3105 268 213 0 0 chr1 183574908 183574955 -98618709 + MIR SINE MIR 78 124 -84 441 240 213 0 chr1 183575106 183575256 -98618408 + MER5A DNA MER1_type 8 189 0 203 372 41 8 chr1 183628829 183628950 -98564714 + MIR3 SINE MIR 2 126 -82 2299 99 3 0 chr1 183629050 183629344 -98564320 + AluSx SINE Alu 1 295 -17 376 270 88 29 chr1 183630618 183630755 -98562909 + MER5A DNA MER1_type 1 145 -44 3102 220 159 6 chr1 183630783 183631650 -98562014 + L1MDa LINE L1 17 1016 -5524 258 170 57 0 chr1 183631750 183631803 -98561861 + L1MDa LINE L1 1313 1368 -5172 381 298 98 82 chr1 183632059 183632435 -98561229 + L3 LINE CR1 931 1312 -265 210 37 0 0 chr1 183632640 183632667 -98560997 + (TG)n Simple_repeat Simple_repeat 1 27 0 1678 193 38 20 chr1 183634053 183634395 -98559269 + MLT1A1 LTR MaLR 7 354 -11 233 302 21 42 chr1 183634841 183634937 -98558727 - L2 LINE L2 -40 3232 3139 296 387 16 0 chr1 183635075 183635199 -98558465 + L2 LINE L2 3147 3272 0 476 185 222 0 chr1 183635531 183635545 -98558119 - L1MA10 LINE L1 0 6334 6321 2724 197 84 91 chr1 183635545 183636331 -98557333 - L1ME1 LINE L1 -5 6161 5408 1917 155 7 10 chr1 183636331 183636628 -98557036 - AluJb SINE Alu -16 296 1 2724 197 84 91 chr1 183636628 183637352 -98556312 - L1ME1 LINE L1 -758 5408 4681 285 29 0 0 chr1 183637666 183637700 -98555964 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 50 0 0 chr1 183637922 183637962 -98555702 + AT_rich Low_complexity Low_complexity 1 40 0 1084 179 24 24 chr1 183638000 183638212 -98555452 - L1MB4 LINE L1 0 6180 5969 382 310 128 74 chr1 183638436 183638870 -98554794 - L3 LINE CR1 -351 1226 817 1823 258 92 40 chr1 183638870 183639467 -98554197 - MLT2E LTR ERVL 0 628 1 382 310 128 74 chr1 183639467 183639545 -98554119 - L3 LINE CR1 -760 817 745 1770 136 0 85 chr1 183639545 183639862 -98553802 + AluSx SINE Alu 6 295 -17 382 310 128 74 chr1 183639862 183639932 -98553732 - L3 LINE CR1 -832 745 611 2317 89 0 26 chr1 183640406 183640719 -98552945 + AluY SINE Alu 1 305 -6 186 97 0 32 chr1 183640850 183640881 -98552783 - L2 LINE L2 -47 3225 3196 448 191 9 45 chr1 183640887 183640997 -98552667 - LTR41 LTR ERVL -6 767 662 457 247 51 32 chr1 183641494 183641652 -98552012 - LTR41 LTR ERVL -603 170 10 376 295 38 48 chr1 183641700 183641899 -98551765 - MIR SINE MIR -51 211 13 216 200 0 0 chr1 183644428 183644468 -98549196 + CT-rich Low_complexity Low_complexity 2 41 0 8367 18 0 0 chr1 183644470 183645619 -98548045 - L1PA2 LINE L1 0 6155 5007 3228 32 0 0 chr1 183645619 183645994 -98547670 + L1P LINE L1 3740 4114 -2032 1761 238 20 88 chr1 183646266 183646713 -98546951 - MLT1E2 LTR MaLR -25 601 204 2031 153 0 6 chr1 183646713 183647026 -98546638 + AluJb SINE Alu 1 311 -1 1761 238 20 88 chr1 183647026 183647184 -98546480 - MLT1E2 LTR MaLR -422 204 37 251 238 111 0 chr1 183648110 183648173 -98545491 - MLT1C LTR MaLR -60 407 338 * 356 217 120 0 chr1 183648160 183648252 -98545412 + MLT1C LTR MaLR 12 114 -353 1990 133 7 3 chr1 183648976 183649270 -98544394 + AluSq SINE Alu 1 295 -18 5799 178 31 24 chr1 183649448 183650316 -98543348 + L1MA8 LINE L1 815 1676 -4598 2305 98 0 7 chr1 183650316 183650611 -98543053 + AluSx SINE Alu 1 293 -19 5799 178 31 24 chr1 183650611 183650868 -98542796 + L1MA8 LINE L1 1676 1930 -4344 4057 116 12 8 chr1 183650868 183651464 -98542200 + LTR43 LTR ERV1 5 602 0 5799 178 31 24 chr1 183651464 183652446 -98541218 + L1MA8 LINE L1 1930 6272 -2 2535 50 0 3 chr1 183652513 183652811 -98540853 + AluSq SINE Alu 1 297 -16 975 254 31 31 chr1 183652827 183653011 -98540653 - Charlie6 DNA MER1_type -1120 2380 2194 2155 108 10 0 chr1 183653011 183653316 -98540348 + AluY SINE Alu 4 311 0 975 254 31 31 chr1 183653316 183653422 -98540242 - Charlie6 DNA MER1_type -1305 2195 2090 2028 132 0 7 chr1 183653423 183653726 -98539938 + AluSx SINE Alu 1 301 -11 5775 156 18 17 chr1 183653735 183654920 -98538744 - L1MA3 LINE L1 0 6305 5114 416 235 61 0 chr1 183655654 183655752 -98537912 + L2 LINE L2 3192 3295 -18 200 346 0 0 chr1 183657470 183657548 -98536116 + L2 LINE L2 2980 3057 -215 240 111 0 0 chr1 183657815 183657851 -98535813 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1355 169 107 65 chr1 183658251 183658683 -98534981 - LTR7 LTR ERV1 0 450 1 208 316 0 0 chr1 183659051 183659108 -98534556 + (CATA)n Simple_repeat Simple_repeat 2 58 0 502 345 99 22 chr1 183659898 183660675 -98532989 + L2 LINE L2 1653 2489 -825 261 318 55 18 chr1 183660873 183660983 -98532681 - MIR SINE MIR -56 152 39 249 279 35 0 chr1 183661341 183661427 -98532237 + LTR33 LTR ERVL 2 90 -431 390 125 125 23 chr1 183661542 183661630 -98532034 + LTR33 LTR ERVL 425 521 0 2544 65 0 0 chr1 183662296 183662603 -98531061 + AluSc SINE Alu 1 307 -2 2273 54 0 0 chr1 183662727 183663007 -98530657 - L1P LINE L1 -1067 5079 4800 3789 40 0 0 chr1 183663007 183663454 -98530210 + L1PA5 LINE L1 5706 6154 0 189 0 0 0 chr1 183663454 183663475 -98530189 + (TA)n Simple_repeat Simple_repeat 2 22 0 1642 192 3 3 chr1 183663477 183663785 -98529879 + L1PA16 LINE L1 5841 6148 -18 1783 205 55 35 chr1 183664708 183665161 -98528503 + MLT1C LTR MaLR 6 467 0 733 175 58 35 chr1 183665166 183665337 -98528327 + MIR SINE MIR 75 249 -13 311 244 176 17 chr1 183665378 183665497 -98528167 - MIR SINE MIR -14 248 111 252 0 0 0 chr1 183666139 183666167 -98527497 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr1 183666989 183667019 -98526645 + AT_rich Low_complexity Low_complexity 1 30 0 216 345 35 17 chr1 183667757 183667873 -98525791 - MIR SINE MIR -58 204 87 312 98 0 0 chr1 183668132 183668173 -98525491 - MLT2C2 LTR ERVL -7 457 417 1249 204 40 50 chr1 183668229 183668552 -98525112 - MLT2B1 LTR ERVL -40 480 161 407 381 66 4 chr1 183669035 183669279 -98524385 + L3 LINE CR1 46 304 -1273 431 364 61 4 chr1 183669305 183669585 -98524079 + L3 LINE CR1 842 1137 -440 489 320 58 25 chr1 183669601 183669851 -98523813 - MIR SINE MIR -6 256 1 289 330 25 49 chr1 183669851 183669933 -98523731 + L3 LINE CR1 1148 1231 -346 1185 99 29 0 chr1 183669933 183670104 -98523560 + L1PA10 LINE L1 5991 6166 -2 289 330 25 49 chr1 183670104 183670220 -98523444 + L3 LINE CR1 1231 1341 -236 416 291 113 26 chr1 183670234 183670464 -98523200 - MIR SINE MIR -11 251 2 248 367 10 0 chr1 183670474 183670572 -98523092 + L3 LINE CR1 1350 1448 -129 192 77 0 0 chr1 183670645 183670671 -98522993 + (TTG)n Simple_repeat Simple_repeat 2 27 0 680 181 8 31 chr1 183670950 183671077 -98522587 + AluSg/x SINE Alu 120 243 -69 216 97 0 0 chr1 183671077 183671108 -98522556 + (GA)n Simple_repeat Simple_repeat 2 32 0 213 128 26 0 chr1 183672020 183672059 -98521605 - L2 LINE L2 -31 3241 3202 470 350 70 31 chr1 183672318 183672861 -98520803 - L2 LINE L2 -516 2798 2235 330 295 118 2 chr1 183673175 183673340 -98520324 - MIR SINE MIR -63 145 16 958 247 139 44 chr1 183673617 183674221 -98519443 + L2 LINE L2 2636 3312 -1 192 299 206 0 chr1 183675373 183675470 -98518194 + MIR SINE MIR 32 148 -60 296 177 101 13 chr1 183675548 183675627 -98518037 - MER103 DNA DNA -78 88 3 392 236 8 73 chr1 183676472 183676624 -98517040 - MIR SINE MIR -58 150 56 718 295 44 0 chr1 183677866 183678117 -98515547 - MIR SINE MIR 0 262 1 272 334 87 6 chr1 183678242 183678413 -98515251 - MIR SINE MIR -50 212 30 387 351 15 0 chr1 183679254 183679385 -98514279 - MIR3 SINE MIR -34 174 42 418 175 125 0 chr1 183680368 183680448 -98513216 + 5S rRNA rRNA 1 90 -31 22 0 0 0 chr1 183681120 183681142 -98512522 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 183681952 183681979 -98511685 + AT_rich Low_complexity Low_complexity 1 27 0 289 175 18 0 chr1 183682280 183682337 -98511327 - MIR SINE MIR -10 252 195 243 181 56 0 chr1 183685807 183685879 -98507785 + L1ME4a LINE L1 6041 6116 -5 1909 133 7 52 chr1 183686138 183686446 -98507218 + AluSx SINE Alu 1 294 -18 352 304 0 0 chr1 183686756 183686858 -98506806 + L1M4 LINE L1 4487 4588 -1558 2602 27 0 0 chr1 183686881 183687180 -98506484 - L1PA2 LINE L1 0 6155 5857 401 259 22 22 chr1 183687205 183687340 -98506324 + L1MC4a LINE L1 2952 3086 -3060 674 303 70 0 chr1 183687369 183687613 -98506051 + MIR SINE MIR 2 262 0 615 278 60 65 chr1 183687819 183688171 -98505493 + L1MC4a LINE L1 5558 5907 -1901 208 338 0 0 chr1 183688218 183688286 -98505378 + (TA)n Simple_repeat Simple_repeat 2 69 0 1276 132 0 80 chr1 183690570 183690630 -98503034 - MLT2D LTR ERVL -183 231 168 2475 81 0 3 chr1 183690630 183690937 -98502727 + AluSp SINE Alu 2 307 -6 1276 132 0 80 chr1 183690937 183691127 -98502537 - MLT2D LTR ERVL -246 168 1 283 286 58 3 chr1 183691209 183691374 -98502290 + MIR SINE MIR 33 249 -13 184 182 273 0 chr1 183691455 183691510 -98502154 + MIR3 SINE MIR 128 197 -11 731 206 76 16 chr1 183692378 183692562 -98501102 - L1MA9 LINE L1 -147 6165 5971 201 244 44 56 chr1 183692567 183692591 -98501073 + MIR SINE MIR 174 197 -65 1504 137 140 25 chr1 183692591 183692913 -98500751 + MER46B DNA MER2_type 1 234 -2 201 244 44 56 chr1 183692913 183692978 -98500686 + MIR SINE MIR 197 262 0 224 304 34 84 chr1 183693273 183693569 -98500095 + L2 LINE L2 1564 1844 -1470 2159 129 3 0 chr1 183693787 183694082 -98499582 - AluSx SINE Alu -16 296 1 1611 209 94 6 chr1 183694234 183694573 -98499091 - MLT1A2 LTR MaLR -5 369 1 274 313 93 35 chr1 183694573 183694886 -98498778 + L2 LINE L2 2284 2614 -700 186 286 48 0 chr1 183696437 183696500 -98497164 - MIR3 SINE MIR -47 161 96 189 310 56 0 chr1 183703022 183703093 -98490571 - MIR SINE MIR -97 165 91 301 207 52 0 chr1 183703718 183703776 -98489888 - MIR SINE MIR -55 153 93 2148 110 51 0 chr1 183703886 183704178 -98489486 + AluSq SINE Alu 1 307 -6 4332 189 20 6 chr1 183704669 183705469 -98488195 - MER21B LTR ERV1 -52 811 1 279 203 0 0 chr1 183706752 183706811 -98486853 + (TG)n Simple_repeat Simple_repeat 1 59 0 286 333 117 53 chr1 183707433 183707604 -98486060 - L3 LINE CR1 -4 1573 1392 183 286 14 29 chr1 183707606 183707676 -98485988 - L2 LINE L2 -7 3265 3197 182 296 78 70 chr1 183707651 183707766 -98485898 + L2 LINE L2 3155 3270 -2 * 568 307 98 4 chr1 183707964 183708189 -98485475 - MIR SINE MIR -10 252 7 255 125 0 0 chr1 183710143 183710183 -98483481 + (A)n Simple_repeat Simple_repeat 1 40 0 206 32 32 0 chr1 183710772 183710803 -98482861 + (TG)n Simple_repeat Simple_repeat 2 33 0 1212 148 74 5 chr1 183712402 183712605 -98481059 + MER20 DNA MER1_type 1 217 -2 1901 132 30 17 chr1 183712720 183713016 -98480648 - AluJb SINE Alu -12 300 1 1698 157 3 24 chr1 183713102 183713396 -98480268 + AluJb SINE Alu 15 302 -10 318 319 163 12 chr1 183713790 183713956 -98479708 + MIR SINE MIR 38 228 -34 700 172 153 0 chr1 183715399 183715562 -98478102 - MER5A DNA MER1_type 0 189 2 658 221 152 13 chr1 183717707 183717865 -98475799 - MER5A DNA MER1_type 0 189 10 914 116 0 0 chr1 183718067 183718188 -98475476 + AluSp/q SINE Alu 177 297 -16 693 202 36 123 chr1 183718967 183719008 -98474656 - L1MC4 LINE L1 -1 8041 7998 2132 126 0 17 chr1 183719008 183719310 -98474354 + AluSx SINE Alu 1 297 -15 693 202 36 123 chr1 183719310 183719520 -98474144 - L1MC4 LINE L1 -44 7998 7812 293 279 81 27 chr1 183720126 183720237 -98473427 + MIR SINE MIR 17 133 -75 247 261 78 52 chr1 183721182 183721297 -98472367 - L2 LINE L2 -4 3309 3192 287 324 81 9 chr1 183722552 183722663 -98471001 - L2 LINE L2 -8 3264 3146 440 286 39 20 chr1 183722760 183722958 -98470706 + MIR3 SINE MIR 1 197 -65 202 339 51 0 chr1 183723958 183724076 -98469588 + L3 LINE CR1 1084 1207 -370 575 309 64 0 chr1 183724159 183724347 -98469317 - MIR SINE MIR -15 247 48 233 200 0 20 chr1 183724356 183724406 -98469258 - MER5B DNA MER1_type -129 49 1 198 333 19 46 chr1 183729913 183730021 -98463643 - L2 LINE L2 0 3272 3168 439 289 36 103 chr1 183732068 183732484 -98461180 + L2 LINE L2 2880 3267 -5 266 314 50 16 chr1 183732910 183733031 -98460633 - MIR SINE MIR -12 250 126 266 235 105 53 chr1 183733040 183733208 -98460456 - MIR SINE MIR -42 220 43 215 182 55 36 chr1 183733364 183733419 -98460245 - MIR3 SINE MIR -29 179 124 483 271 42 16 chr1 183733463 183733608 -98460056 - MIR SINE MIR -62 146 40 609 14 0 0 chr1 183733879 183733949 -98459715 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 558 296 147 59 chr1 183734176 183734239 -98459425 + HAL1 LINE L1 1230 1286 -1221 221 0 0 33 chr1 183734239 183734269 -98459395 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 558 296 147 59 chr1 183734269 183734614 -98459050 + HAL1 LINE L1 1286 1674 -833 322 155 0 0 chr1 183734625 183734683 -98458981 - L1MA8 LINE L1 -138 6153 6096 2634 310 122 58 chr1 183734876 183736351 -98457313 + L1MDa LINE L1 2292 3672 -2868 222 37 0 0 chr1 183736351 183736378 -98457286 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 2634 310 122 58 chr1 183736378 183736473 -98457191 + L1MDa LINE L1 3672 3760 -2780 2161 115 3 3 chr1 183736473 183736761 -98456903 - AluSx SINE Alu -24 288 1 2634 310 122 58 chr1 183736761 183737731 -98455933 + L1MDa LINE L1 3760 5084 -1456 184 238 0 48 chr1 183737731 183737773 -98455891 - L2 LINE L2 -2833 481 442 266 275 202 0 chr1 183738521 183738630 -98455034 - MIR3 SINE MIR -45 163 33 2723 91 0 0 chr1 183741210 183741562 -98452102 - L1PA11 LINE L1 -9 6165 5814 689 50 1 3 chr1 183741725 183741829 -98451835 - L1PA11 LINE L1 -343 5811 5709 2333 88 3 50 chr1 183742000 183742319 -98451345 - AluY SINE Alu -7 304 1 2099 110 11 4 chr1 183742381 183742662 -98451002 + AluSx SINE Alu 1 283 -29 935 182 62 90 chr1 183743065 183743454 -98450210 - L1MD3 LINE L1 0 8041 7678 2294 80 0 26 chr1 183743945 183744258 -98449406 + AluSc SINE Alu 1 305 -4 1296 76 0 0 chr1 183744628 183744785 -98448879 - AluSg/x SINE Alu -17 295 139 3546 148 80 35 chr1 183744785 183744923 -98448741 + L1MA8 LINE L1 5459 5589 -702 2524 76 0 0 chr1 183744923 183745226 -98448438 + AluSg SINE Alu 1 303 -7 294 29 0 0 chr1 183745226 183745261 -98448403 + (TA)n Simple_repeat Simple_repeat 2 36 0 3546 148 80 35 chr1 183745261 183745416 -98448248 + L1MA8 LINE L1 5589 5736 -555 369 0 0 0 chr1 183745416 183745457 -98448207 + (CA)n Simple_repeat Simple_repeat 2 42 0 3546 148 80 35 chr1 183745457 183745768 -98447896 + L1MA8 LINE L1 5736 6112 -179 2237 124 0 0 chr1 183745768 183746074 -98447590 + AluSx SINE Alu 1 306 -6 3546 148 80 35 chr1 183746074 183746262 -98447402 + L1MA8 LINE L1 6112 6290 -1 2776 230 68 24 chr1 183746372 183747150 -98446514 + L1ME1 LINE L1 5350 6161 -5 385 240 160 73 chr1 183747913 183748351 -98445313 + L1ME4a LINE L1 5634 6109 -12 879 84 0 23 chr1 183748864 183748995 -98444669 - MER11A LTR ERVK 0 1266 1139 272 318 71 19 chr1 183749155 183749309 -98444355 + MIR SINE MIR 72 233 -29 573 308 101 4 chr1 183749427 183749654 -98444010 + L2 LINE L2 3023 3271 -1 243 292 267 17 chr1 183749770 183749890 -98443774 + L2 LINE L2 3123 3272 0 2422 90 0 10 chr1 183750118 183750430 -98443234 - AluSc SINE Alu 0 309 1 2009 153 0 3 chr1 183750542 183750849 -98442815 + AluJo SINE Alu 1 306 -6 2015 115 14 7 chr1 183751294 183751590 -98442074 - AluSx SINE Alu -14 298 1 2823 159 4 4 chr1 183751717 183752176 -98441488 + MER31A LTR ERV1 27 485 0 2438 97 3 0 chr1 183752360 183752670 -98440994 - AluSp SINE Alu -2 311 1 2169 132 3 0 chr1 183752674 183752970 -98440694 - AluSx SINE Alu -15 297 1 1502 253 73 42 chr1 183755028 183755628 -98438036 + L1MC4a LINE L1 5391 6009 -1799 2031 135 0 0 chr1 183755720 183756021 -98437643 - AluSx SINE Alu 0 301 1 2378 64 0 0 chr1 183756059 183756364 -98437300 - AluY SINE Alu 0 305 1 414 272 0 0 chr1 183756656 183756748 -98436916 + MER81 DNA DNA 1 92 -22 312 327 36 36 chr1 183756752 183756862 -98436802 + L1MC4a LINE L1 6478 6587 -1221 320 200 0 0 chr1 183756928 183756978 -98436686 - MER58 DNA MER1_type -2143 277 228 518 233 308 17 chr1 183757002 183757242 -98436422 + L1MC4a LINE L1 6644 7038 -1004 272 188 72 29 chr1 183757264 183757333 -98436331 + MER77 LTR ERV1 41 112 -493 957 85 28 23 chr1 183757932 183757981 -98435683 + (GAAA)n Simple_repeat Simple_repeat 1 227 0 957 85 28 23 chr1 183757981 183758158 -98435506 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 274 325 40 83 chr1 183758281 183758509 -98435155 + MLT1K LTR MaLR 353 570 -18 1606 133 44 44 chr1 183758949 183759325 -98434339 - MSTA LTR MaLR -7 368 1 393 272 125 15 chr1 183759328 183759464 -98434200 + MIR SINE MIR 39 189 -73 484 313 30 67 chr1 183759539 183759839 -98433825 + MLT1L LTR MaLR 320 608 -7 1991 140 3 3 chr1 183760283 183760576 -98433088 - AluSx SINE Alu -19 293 1 22 0 0 0 chr1 183760842 183760864 -98432800 + AT_rich Low_complexity Low_complexity 1 22 0 5020 55 2 2 chr1 183761075 183761658 -98432006 + LTR14C LTR ERVK 5 587 0 1930 236 19 84 chr1 183761872 183762344 -98431320 - MLT1E2 LTR MaLR 0 626 204 2015 153 0 6 chr1 183762344 183762657 -98431007 + AluJb SINE Alu 1 311 -1 1930 236 19 84 chr1 183762657 183762815 -98430849 - MLT1E2 LTR MaLR -422 204 37 248 238 111 0 chr1 183763741 183763804 -98429860 - MLT1C LTR MaLR -60 407 338 * 355 217 120 0 chr1 183763791 183763883 -98429781 + MLT1C LTR MaLR 12 114 -353 1971 133 7 3 chr1 183764607 183764901 -98428763 + AluSq SINE Alu 1 295 -18 5877 157 22 12 chr1 183765079 183765947 -98427717 + L1MA8 LINE L1 4521 5379 -912 2284 98 0 7 chr1 183765947 183766242 -98427422 + AluSx SINE Alu 1 293 -19 5877 157 22 12 chr1 183766242 183766499 -98427165 + L1MA8 LINE L1 5379 5632 -659 4261 116 12 8 chr1 183766499 183767095 -98426569 + LTR43 LTR ERV1 5 602 0 5877 157 22 12 chr1 183767095 183767717 -98425947 + L1MA8 LINE L1 5632 6289 -2 550 329 34 48 chr1 183767723 183768144 -98425520 + L1ME3A LINE L1 986 1412 -4984 2603 54 0 3 chr1 183768144 183768458 -98425206 + AluSq SINE Alu 1 313 0 550 329 34 48 chr1 183768458 183768564 -98425100 + L1ME3A LINE L1 1412 1518 -4878 2544 62 0 0 chr1 183768564 183768872 -98424792 + AluY SINE Alu 1 308 -3 550 329 34 48 chr1 183768872 183769027 -98424637 + L1ME3A LINE L1 1518 1659 -4737 787 268 58 33 chr1 183769190 183769697 -98423967 + L1ME3A LINE L1 2074 2554 -3661 2335 103 3 0 chr1 183769701 183770003 -98423661 + AluSq SINE Alu 1 303 -10 2685 254 58 72 chr1 183770043 183770178 -98423486 + L1ME3A LINE L1 4490 4625 -1614 311 82 41 0 chr1 183770178 183770227 -98423437 + L1PB1 LINE L1 6101 6151 0 2685 254 58 72 chr1 183770227 183770299 -98423365 + L1ME3A LINE L1 4625 4697 -1542 1679 140 53 57 chr1 183770299 183770599 -98423065 - AluJb SINE Alu -13 299 1 1368 190 92 7 chr1 183770600 183770884 -98422780 - AluJo SINE Alu -4 308 1 2685 254 58 72 chr1 183770884 183771370 -98422294 + L1ME3A LINE L1 4697 5189 -1050 2476 72 3 0 chr1 183771370 183771676 -98421988 + AluSp SINE Alu 2 308 -5 2685 254 58 72 chr1 183771676 183772175 -98421489 + L1ME3A LINE L1 5189 5694 -545 1891 137 34 14 chr1 183772175 183772467 -98421197 - AluSx SINE Alu -14 298 1 2685 254 58 72 chr1 183772467 183773050 -98420614 + L1ME3A LINE L1 5694 6231 -8 189 107 0 0 chr1 183773173 183773201 -98420463 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2166 114 13 7 chr1 183773467 183773774 -98419890 + AluSx SINE Alu 1 309 -3 691 299 27 45 chr1 183773971 183774375 -98419289 + L1ME4a LINE L1 5550 5946 -175 248 122 122 0 chr1 183774643 183774684 -98418980 + AluSx SINE Alu 1 46 -256 4111 110 97 152 chr1 183774684 183776148 -98417516 + pTR5 LTR ERV1 750 2438 0 1741 130 7 7 chr1 183776151 183776420 -98417244 + AluSx SINE Alu 31 299 -13 375 327 120 30 chr1 183776963 183777263 -98416401 - L1M4 LINE L1 -1095 6470 6144 650 346 52 6 chr1 183777393 183777722 -98415942 + MER93a LTR ERV1 59 402 0 404 269 68 36 chr1 183777949 183778258 -98415406 - L1M4 LINE L1 -1738 5827 5509 203 59 0 29 chr1 183778258 183778292 -98415372 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 586 143 20 20 chr1 183778296 183778394 -98415270 - AluJb SINE Alu -196 116 19 234 324 71 24 chr1 183778516 183778726 -98414938 - L1M4 LINE L1 -2185 5380 5161 350 291 77 57 chr1 183778799 183778875 -98414789 + L1MC/D LINE L1 5257 5330 -791 2372 79 0 7 chr1 183778875 183779179 -98414485 + AluY SINE Alu 1 302 -9 350 291 77 57 chr1 183779179 183779401 -98414263 + L1MC/D LINE L1 5330 5547 -574 33 56 0 0 chr1 183779401 183779455 -98414209 + AT_rich Low_complexity Low_complexity 1 54 0 1755 212 59 75 chr1 183779600 183779878 -98413786 - L1ME1 LINE L1 -5 6161 5880 2324 84 0 7 chr1 183779878 183780174 -98413490 + AluSx SINE Alu 11 304 -8 1755 212 59 75 chr1 183780174 183780523 -98413141 - L1ME1 LINE L1 -286 5880 5544 4242 203 29 41 chr1 183780563 183782236 -98411428 - L1M4 LINE L1 -3336 4229 2583 1601 191 0 10 chr1 183782236 183782524 -98411140 - AluJb SINE Alu -23 289 5 4242 203 29 41 chr1 183782524 183782642 -98411022 - L1M4 LINE L1 -4982 2583 2465 23 68 0 0 chr1 183783154 183783198 -98410466 + AT_rich Low_complexity Low_complexity 1 44 0 852 311 6 30 chr1 183783345 183783676 -98409988 + L1MC4 LINE L1 6702 7024 -1018 577 281 44 57 chr1 183783726 183784200 -98409464 + L1MC5 LINE L1 7449 7916 -45 2060 121 11 3 chr1 183785031 183785313 -98408351 - AluSx SINE Alu -28 284 1 421 135 14 0 chr1 183785449 183785523 -98408141 + L1MA5 LINE L1 6221 6295 -5 281 191 0 0 chr1 183785523 183785565 -98408099 - L1MC1 LINE L1 -48 6285 6244 447 19 0 0 chr1 183785565 183785617 -98408047 + (CA)n Simple_repeat Simple_repeat 1 52 0 210 219 0 0 chr1 183785617 183785681 -98407983 + GA-rich Low_complexity Low_complexity 3 66 0 1977 127 49 57 chr1 183785681 183786050 -98407614 + THE1C LTR MaLR 2 367 -8 761 151 0 7 chr1 183786050 183786189 -98407475 + GA-rich Low_complexity Low_complexity 1 138 0 305 410 12 0 chr1 183786612 183786778 -98406886 - MIR3 SINE MIR 0 208 41 251 161 48 48 chr1 183788841 183788903 -98404761 + HsTC2 DNA Tc2 1 62 -1836 3504 123 31 17 chr1 183789003 183789273 -98404391 + L1MA8 LINE L1 5535 5800 -491 2008 139 7 0 chr1 183789273 183789568 -98404096 - AluSx SINE Alu -15 297 1 3504 123 31 17 chr1 183789568 183789872 -98403792 + L1MA8 LINE L1 5800 6117 -174 19318 66 28 0 chr1 183789949 183792418 -98401246 + L1P LINE L1 11 2548 -3598 22 0 0 0 chr1 183792418 183792440 -98401224 + AT_rich Low_complexity Low_complexity 1 22 0 5365 90 104 38 chr1 183792527 183793380 -98400284 - SVA Other Other 0 1386 477 24590 34 3 1 chr1 183793380 183797020 -98396644 + L1PA4 LINE L1 2533 6154 -1 2109 146 0 0 chr1 183797180 183797481 -98396183 + AluSx SINE Alu 1 301 -11 1831 146 48 7 chr1 183797625 183797920 -98395744 + AluJb SINE Alu 3 309 -3 562 84 0 24 chr1 183798454 183798537 -98395127 - L1PA5 LINE L1 0 6154 6074 1221 220 97 0 chr1 183798621 183798864 -98394800 + L1ME1 LINE L1 4895 5184 -962 2386 41 0 17 chr1 183798864 183799158 -98394506 - AluY SINE Alu -22 289 1 1221 220 97 0 chr1 183799158 183799264 -98394400 + L1ME1 LINE L1 5184 5278 -868 2772 49 0 23 chr1 183799271 183799617 -98394047 + SVA Other Other 1046 1383 -3 910 72 232 0 chr1 183799617 183799755 -98393909 + AluY SINE Alu 134 303 -8 493 163 12 0 chr1 183799844 183799930 -98393734 + AluJ/FLAM SINE Alu 1 87 -225 221 163 0 0 chr1 183799940 183799983 -98393681 + A-rich Low_complexity Low_complexity 1 43 0 2359 240 40 64 chr1 183799983 183800631 -98393033 + L1ME1 LINE L1 5272 5893 -273 2216 87 10 19 chr1 183800631 183800943 -98392721 - AluY SINE Alu -2 309 1 2359 240 40 64 chr1 183800943 183801206 -98392458 + L1ME1 LINE L1 5893 6161 -5 554 233 22 22 chr1 183801216 183801396 -98392268 + L1M4 LINE L1 1471 1650 -4892 441 50 0 0 chr1 183801405 183801465 -98392199 + (CA)n Simple_repeat Simple_repeat 2 61 0 1828 139 0 45 chr1 183801524 183801833 -98391831 + AluJb SINE Alu 18 312 0 2392 79 0 13 chr1 183801852 183802167 -98391497 + AluY SINE Alu 1 311 0 497 323 8 8 chr1 183802178 183802311 -98391353 - MIR SINE MIR -125 137 5 2096 126 3 17 chr1 183802508 183802810 -98390854 + AluSx SINE Alu 5 302 -10 288 277 214 0 chr1 183803021 183803133 -98390531 - MIR SINE MIR -4 258 123 2132 127 0 0 chr1 183803336 183803663 -98390001 - AluSx SINE Alu 0 327 1 235 229 21 0 chr1 183804247 183804295 -98389369 - MLT1L LTR MaLR -416 199 151 487 312 57 79 chr1 183804396 183804779 -98388885 + L2 LINE L2 2760 3127 -186 1720 174 16 10 chr1 183804779 183805089 -98388575 - AluJo SINE Alu 0 312 1 487 312 57 79 chr1 183805089 183805272 -98388392 + L2 LINE L2 3127 3312 -1 1056 231 32 141 chr1 183805634 183805739 -98387925 + L2 LINE L2 2607 2722 -591 1966 151 13 0 chr1 183805739 183806037 -98387627 + AluJb SINE Alu 1 302 -10 1056 231 32 141 chr1 183806037 183806086 -98387578 + L2 LINE L2 2722 2775 -538 363 23 0 0 chr1 183806086 183806130 -98387534 + (TCTCCC)n Simple_repeat Simple_repeat 1 44 0 11004 33 11 53 chr1 183806135 183807543 -98386121 + SVA Other Other 38 1386 0 1056 231 32 141 chr1 183807543 183808140 -98385524 + L2 LINE L2 2779 3270 -43 258 32 0 0 chr1 183808169 183808200 -98385464 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 189 0 0 0 chr1 183808686 183808707 -98384957 + (T)n Simple_repeat Simple_repeat 1 21 0 259 287 64 32 chr1 183808757 183808851 -98384813 + L2 LINE L2 3169 3265 -7 515 261 39 38 chr1 183809015 183809308 -98384356 - L1ME2 LINE L1 -106 6058 3652 402 280 17 63 chr1 183809611 183809786 -98383878 + MLT1J LTR MaLR 1 167 -344 433 101 159 0 chr1 183809959 183810028 -98383636 - MER47A DNA MER2_type 0 366 287 751 187 0 0 chr1 183810034 183810157 -98383507 + FLAM_C SINE Alu 5 127 -16 1471 158 51 0 chr1 183810160 183810433 -98383231 - MER47A DNA MER2_type -78 288 2 393 321 69 18 chr1 183810540 183810758 -98382906 - MLT1J LTR MaLR -174 337 109 380 265 29 29 chr1 183810836 183810972 -98382692 + MLT1J LTR MaLR 330 465 -46 3596 166 23 32 chr1 183811020 183811766 -98381898 - L1MB3 LINE L1 -1 6182 5444 447 228 152 32 chr1 183811855 183812013 -98381651 - MIR SINE MIR -73 189 13 473 269 138 0 chr1 183812159 183812289 -98381375 + MIR3 SINE MIR 43 190 -18 1150 180 0 20 chr1 183812840 183813040 -98380624 + AluJb SINE Alu 1 196 -116 205 200 0 0 chr1 183813065 183813105 -98380559 + A-rich Low_complexity Low_complexity 1 40 0 2830 212 59 62 chr1 183813190 183813549 -98380115 + Charlie6 DNA MER1_type 60 418 -3082 2275 98 0 0 chr1 183813549 183813846 -98379818 + AluSx SINE Alu 1 297 -15 2830 212 59 62 chr1 183813846 183813987 -98379677 + Charlie6 DNA MER1_type 418 558 -2942 2555 53 0 0 chr1 183813987 183814289 -98379375 - AluY SINE Alu -9 302 1 2830 212 59 62 chr1 183814289 183814581 -98379083 + Charlie6 DNA MER1_type 558 851 -2649 307 241 25 25 chr1 183814591 183814670 -98378994 + MLT1D LTR MaLR 20 98 -407 22 0 0 0 chr1 183815221 183815243 -98378421 + AT_rich Low_complexity Low_complexity 1 22 0 24 103 0 0 chr1 183815685 183815772 -98377892 + AT_rich Low_complexity Low_complexity 1 87 0 1738 156 0 0 chr1 183816162 183816418 -98377246 - AluSg SINE Alu -20 290 35 30 27 0 0 chr1 183816470 183816507 -98377157 + AT_rich Low_complexity Low_complexity 1 37 0 352 301 116 17 chr1 183816684 183817039 -98376625 - Charlie2a DNA MER1_type -929 1933 1544 758 273 72 46 chr1 183817231 183817535 -98376129 - MER77 LTR ERV1 -133 472 161 563 241 123 30 chr1 183817555 183817758 -98375906 - MER77 LTR ERV1 -380 225 4 430 237 68 21 chr1 183818597 183818787 -98374877 + LTR37B LTR ERV1 270 468 0 509 330 64 70 chr1 183818934 183819227 -98374437 + L1MEd LINE L1 463 753 -5366 2031 131 3 7 chr1 183819227 183819524 -98374140 + AluSq SINE Alu 2 297 -16 509 330 64 70 chr1 183819524 183819733 -98373931 + L1MEd LINE L1 753 962 -5157 27 0 0 0 chr1 183819739 183819766 -98373898 + AT_rich Low_complexity Low_complexity 1 27 0 3617 171 79 43 chr1 183820251 183821064 -98372600 - MER4D LTR ERV1 -61 842 1 847 312 35 23 chr1 183821071 183821417 -98372247 + LTR16B LTR ERVL 109 458 -6 2593 131 24 5 chr1 183823405 183823825 -98369839 + MSTA LTR MaLR 1 428 0 2780 180 8 11 chr1 183823825 183824348 -98369316 + MSTA-int LTR MaLR 1 521 -1130 205 321 86 0 chr1 183824450 183824531 -98369133 + MIR SINE MIR 175 262 0 388 315 16 71 chr1 183825842 183826026 -98367638 - MER96 DNA MER1_type 0 175 2 278 287 6 43 chr1 183826136 183826300 -98367364 - HAL1 LINE L1 -961 1546 1389 305 263 116 23 chr1 183826417 183826676 -98366988 - L1MEc LINE L1 -5142 1254 972 610 340 10 7 chr1 183826755 183827046 -98366618 - L1MEc LINE L1 -5596 800 509 22 80 0 0 chr1 183827690 183827740 -98365924 + AT_rich Low_complexity Low_complexity 1 50 0 494 231 0 0 chr1 183828166 183828270 -98365394 - FRAM SINE Alu -10 166 63 244 175 53 18 chr1 183828270 183828327 -98365337 + LTR68 LTR ERV1 23 81 -659 862 119 21 28 chr1 183828428 183828571 -98365093 - THE1-int LTR MaLR -979 601 460 42 64 0 27 chr1 183828571 183828681 -98364983 + AT_rich Low_complexity Low_complexity 1 107 0 707 261 19 33 chr1 183829375 183829590 -98364074 - MER58B DNA MER1_type -12 329 118 4386 224 14 6 chr1 183829695 183830764 -98362900 - L1 LINE L1 -1230 4916 3839 295 257 37 64 chr1 183830943 183831052 -98362612 - MIR SINE MIR -104 158 53 204 158 0 0 chr1 183831143 183831181 -98362483 + (CA)n Simple_repeat Simple_repeat 1 38 0 2127 121 3 3 chr1 183831322 183831635 -98362029 + AluSq SINE Alu 1 313 0 193 276 69 0 chr1 183834197 183834255 -98359409 + L3 LINE CR1 932 993 -584 335 317 10 0 chr1 183834372 183834476 -98359188 + MIR SINE MIR 110 214 -48 2471 70 0 0 chr1 183835465 183835765 -98357899 + AluY SINE Alu 1 300 -11 222 37 0 0 chr1 183836017 183836044 -98357620 + (A)n Simple_repeat Simple_repeat 1 27 0 988 336 33 7 chr1 183836657 183837080 -98356584 - LTR16B LTR ERVL -9 455 22 2258 92 0 7 chr1 183837279 183837582 -98356082 - AluY SINE Alu -10 301 1 4151 89 25 0 chr1 183837860 183838458 -98355206 + L1PA7 LINE L1 5506 6118 -36 1539 95 18 0 chr1 183838458 183838673 -98354991 + L1PA8 LINE L1 5948 6172 0 843 115 164 79 chr1 183838971 183839136 -98354528 - AluY SINE Alu -132 179 1 2437 270 16 59 chr1 183839137 183840107 -98353557 - L1PA12 LINE L1 -4689 2892 1965 679 332 125 16 chr1 183840959 183841399 -98352265 + L2 LINE L2 2474 2961 -353 3102 150 20 15 chr1 183841569 183842057 -98351607 + MER61D-int LTR ERV1 3515 3999 -2997 180 0 0 0 chr1 183842057 183842077 -98351587 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3102 150 20 15 chr1 183842077 183842342 -98351322 + MER61D-int LTR ERV1 3999 6995 -1 2753 155 34 28 chr1 183842343 183842662 -98351002 + MER61D LTR ERV1 1 326 -175 2013 138 3 0 chr1 183842662 183842951 -98350713 + AluSg SINE Alu 2 291 -19 2753 155 34 28 chr1 183842951 183843127 -98350537 + MER61D LTR ERV1 326 499 -2 2604 184 48 45 chr1 183843461 183844065 -98349599 + L1MA6 LINE L1 5694 6299 -1 4257 206 44 11 chr1 183844678 183845538 -98348126 + MSTA-int LTR MaLR 763 1651 0 2388 155 21 16 chr1 183845538 183845964 -98347700 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr1 183846856 183846881 -98346783 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr1 183847391 183847421 -98346243 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr1 183847687 183847726 -98345938 + AT_rich Low_complexity Low_complexity 1 39 0 600 63 13 0 chr1 183847820 183847899 -98345765 + L1PA6 LINE L1 6005 6084 -70 2342 112 14 0 chr1 183850365 183850730 -98342934 - THE1B-int LTR MaLR -1210 370 1 1949 168 25 25 chr1 183850730 183851094 -98342570 - THE1B LTR MaLR 0 364 1 1107 307 38 68 chr1 183851094 183852353 -98341311 - L1PA12 LINE L1 -5566 2015 8 574 261 51 6 chr1 183852361 183852518 -98341146 - MLT1A2 LTR MaLR -54 320 157 2066 121 0 29 chr1 183852643 183852950 -98340714 + AluY SINE Alu 1 298 -13 275 340 137 32 chr1 183854033 183854465 -98339199 + L2 LINE L2 590 1066 -2248 556 236 18 24 chr1 183855075 183855240 -98338424 - MLT1D LTR MaLR -28 477 314 212 143 0 0 chr1 183855581 183855616 -98338048 + (CA)n Simple_repeat Simple_repeat 2 36 0 214 205 0 0 chr1 183856596 183856635 -98337029 + A-rich Low_complexity Low_complexity 1 39 0 30 69 0 0 chr1 183857032 183857090 -98336574 + AT_rich Low_complexity Low_complexity 1 58 0 1891 151 7 13 chr1 183857249 183857554 -98336110 - AluSx SINE Alu -9 303 1 1548 210 113 10 chr1 183857706 183858121 -98335543 - MER31B LTR ERV1 -8 458 1 210 260 0 0 chr1 183859313 183859363 -98334301 + L2 LINE L2 3214 3263 -9 1203 202 11 29 chr1 183860508 183860859 -98332805 + L1MA3 LINE L1 2712 3056 -3090 * 5295 160 20 17 chr1 183860845 183861152 -98332512 + L1MA3 LINE L1 4689 4994 -1311 1930 138 26 30 chr1 183861152 183861456 -98332208 + AluSx SINE Alu 1 303 -9 5295 160 20 17 chr1 183861456 183862745 -98330919 + L1MA3 LINE L1 4994 6295 -10 1876 131 0 7 chr1 183862785 183863067 -98330597 - AluSx SINE Alu -32 280 1 1508 216 20 88 chr1 183863067 183863174 -98330490 + Charlie6 DNA MER1_type 2091 2204 -1296 2509 52 10 0 chr1 183863174 183863479 -98330185 - AluY SINE Alu 0 311 4 1508 216 20 88 chr1 183863479 183863661 -98330003 + Charlie6 DNA MER1_type 2204 2397 -1103 2400 96 0 6 chr1 183863661 183863975 -98329689 - AluSx SINE Alu 0 312 1 1508 216 20 88 chr1 183863975 183864222 -98329442 + Charlie6 DNA MER1_type 2397 2591 -909 769 151 0 8 chr1 183864223 183864342 -98329322 + FLAM_C SINE Alu 1 118 -25 3260 193 55 26 chr1 183864375 183864705 -98328959 + Charlie6 DNA MER1_type 2620 2939 -561 2111 117 0 0 chr1 183864705 183865029 -98328635 - AluSx SINE Alu 0 324 1 3260 193 55 26 chr1 183865029 183865548 -98328116 + Charlie6 DNA MER1_type 2939 3495 -5 344 269 18 58 chr1 183865557 183865728 -98327936 - LTR41 LTR ERVL -10 763 600 217 247 14 0 chr1 183866251 183866324 -98327340 + (TATAA)n Simple_repeat Simple_repeat 4 77 0 3019 55 0 5 chr1 183866714 183867099 -98326565 - L1PA5 LINE L1 -2 6152 5770 449 0 0 0 chr1 183867099 183867153 -98326511 - AluY SINE Alu -13 298 245 2155 81 10 20 chr1 183867155 183867451 -98326213 - AluY SINE Alu -18 293 1 491 258 31 54 chr1 183867454 183867714 -98325950 + L1ME1 LINE L1 5908 6161 -5 503 233 22 22 chr1 183867724 183867904 -98325760 + L1M4 LINE L1 1471 1650 -4892 441 50 0 0 chr1 183867913 183867973 -98325691 + (CA)n Simple_repeat Simple_repeat 2 61 0 1677 147 14 43 chr1 183868032 183868311 -98325353 + AluJb SINE Alu 18 288 -24 300 316 43 17 chr1 183868544 183868661 -98325003 - MIR SINE MIR -3 259 140 2346 95 0 3 chr1 183868673 183868977 -98324687 - AluSg SINE Alu -6 304 2 523 196 23 119 chr1 183869094 183869143 -98324521 + Charlie6 DNA MER1_type 1226 1278 -2222 2320 88 3 0 chr1 183869143 183869439 -98324225 + AluY SINE Alu 1 297 -14 523 196 23 119 chr1 183869439 183869537 -98324127 + Charlie6 DNA MER1_type 1278 1348 -2152 2369 86 3 3 chr1 183869537 183869838 -98323826 + AluSp SINE Alu 2 302 -11 523 196 23 119 chr1 183869838 183869908 -98323756 + Charlie6 DNA MER1_type 1348 1423 -2077 418 115 0 0 chr1 183869944 183870005 -98323659 + AluS SINE Alu 1 61 -249 10983 178 19 64 chr1 183870005 183871167 -98322497 + L1MA3 LINE L1 303 1516 -6049 222 37 0 0 chr1 183871167 183871194 -98322470 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2275 116 0 0 chr1 183871198 183871500 -98322164 - AluSx SINE Alu -10 302 1 10983 178 19 64 chr1 183871500 183871928 -98321736 + L1MA3 LINE L1 1519 1965 -5600 1890 149 3 13 chr1 183871928 183872229 -98321435 + AluSx SINE Alu 1 298 -14 10983 178 19 64 chr1 183872229 183872380 -98321284 + L1MA3 LINE L1 1965 2121 -5444 1919 77 81 0 chr1 183872380 183872640 -98321024 + AluY SINE Alu 16 296 -15 10983 178 19 64 chr1 183872640 183873538 -98320126 + L1MA3 LINE L1 2121 3058 -4507 1827 170 6 50 chr1 183873538 183873855 -98319809 + AluJb SINE Alu 1 303 -9 10983 178 19 64 chr1 183873855 183874088 -98319576 + L1MA3 LINE L1 3058 3300 -4265 868 89 89 8 chr1 183874088 183874211 -98319453 + AluSq/x SINE Alu 1 133 -179 2159 96 7 7 chr1 183874213 183874506 -98319158 + AluSg SINE Alu 1 293 -17 10983 178 19 64 chr1 183874506 183874722 -98318942 + L1MA3 LINE L1 3301 3525 -4040 1208 40 7 0 chr1 183874722 183874872 -98318792 + L1PA7 LINE L1 6004 6154 0 2268 103 0 7 chr1 183874876 183875178 -98318486 + AluSc SINE Alu 1 300 -9 10983 178 19 64 chr1 183875178 183875622 -98318042 + L1MA3 LINE L1 3528 4475 -3090 5338 160 17 16 chr1 183875608 183875915 -98317749 + L1MA3 LINE L1 6108 6413 -1311 * 1930 138 26 30 chr1 183875915 183876219 -98317445 + AluSx SINE Alu 1 303 -9 5338 160 17 16 chr1 183876219 183877519 -98316145 + L1MA3 LINE L1 6413 7724 0 2023 129 0 7 chr1 183877528 183877831 -98315833 - AluSx SINE Alu -11 301 1 3893 188 40 128 chr1 183877832 183877938 -98315726 + Charlie6 DNA MER1_type 2090 2204 -1296 2464 53 13 0 chr1 183877938 183878242 -98315422 - AluY SINE Alu 0 311 4 3893 188 40 128 chr1 183878242 183878424 -98315240 + Charlie6 DNA MER1_type 2204 2400 -1100 2400 96 0 6 chr1 183878424 183878738 -98314926 - AluSx SINE Alu 0 312 1 3893 188 40 128 chr1 183878738 183878986 -98314678 + Charlie6 DNA MER1_type 2400 2668 -832 769 151 0 8 chr1 183878986 183879105 -98314559 + FLAM_C SINE Alu 1 118 -25 3893 188 40 128 chr1 183879105 183879468 -98314196 + Charlie6 DNA MER1_type 2668 3061 -439 2111 117 0 0 chr1 183879468 183879792 -98313872 - AluSx SINE Alu 0 324 1 3893 188 40 128 chr1 183879792 183880311 -98313353 + Charlie6 DNA MER1_type 3061 3495 -5 362 265 18 53 chr1 183880320 183880490 -98313174 - LTR41 LTR ERVL -10 763 600 217 247 14 0 chr1 183881013 183881086 -98312578 + (TATAA)n Simple_repeat Simple_repeat 4 77 0 3559 42 0 20 chr1 183881476 183881854 -98311810 - L1PA5 LINE L1 -2 6152 5783 2696 16 7 0 chr1 183881854 183882157 -98311507 - AluYa5 SINE Alu -6 305 1 3559 42 0 20 chr1 183882157 183882233 -98311431 - L1PA5 LINE L1 -371 5783 5707 1685 108 6 133 chr1 183882446 183882869 -98310795 + AluSx SINE Alu 1 382 0 2286 94 3 0 chr1 183883633 183883931 -98309733 - AluSg SINE Alu -11 299 1 1928 264 76 32 chr1 183884077 183884371 -98309293 - L2 LINE L2 -7 3306 3026 2278 108 0 7 chr1 183884371 183884678 -98308986 + AluSx SINE Alu 3 307 -5 1928 264 76 32 chr1 183884678 183885191 -98308473 - L2 LINE L2 -287 3026 2452 2102 104 10 29 chr1 183885191 183885498 -98308166 + AluSx SINE Alu 5 305 -7 1928 264 76 32 chr1 183885498 183885634 -98308030 - L2 LINE L2 -861 2452 2323 200 167 0 0 chr1 183886086 183886116 -98307548 + L2 LINE L2 3136 3165 -107 204 125 0 0 chr1 183886159 183886191 -98307473 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 24 32 0 0 chr1 183886454 183886485 -98307179 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr1 183886582 183886618 -98307046 + AT_rich Low_complexity Low_complexity 1 36 0 2188 200 69 16 chr1 183886739 183887248 -98306416 - MLT1F LTR MaLR -6 536 1 1493 178 3 77 chr1 183888061 183888387 -98305277 + AluJo SINE Alu 1 302 -10 3379 163 8 97 chr1 183888457 183888786 -98304878 - MER4E LTR ERV1 0 779 422 1577 106 13 17 chr1 183888786 183889022 -98304642 + L1PA10 LINE L1 5930 6164 -4 3379 163 8 97 chr1 183889022 183889307 -98304357 - MER4E LTR ERV1 -357 422 113 1985 127 33 29 chr1 183889307 183889614 -98304050 + AluSq SINE Alu 1 308 -5 2023 90 72 0 chr1 183889616 183889895 -98303769 + AluSq SINE Alu 1 299 -14 3379 163 8 97 chr1 183889895 183890009 -98303655 - MER4E LTR ERV1 -667 112 -11 2225 119 0 0 chr1 183890009 183890302 -98303362 + AluSx SINE Alu 1 293 -19 3379 163 8 97 chr1 183890302 183890321 -98303343 - MER4E LTR ERV1 -790 4294967285 -30 4200 109 21 16 chr1 183890321 183890953 -98302711 - MER41B LTR ERV1 0 635 1 3379 163 8 97 chr1 183890953 183891015 -98302649 - MER4E LTR ERV1 -809 4294967266 40 2054 111 13 35 chr1 183891015 183891331 -98302333 + AluSp SINE Alu 1 309 -4 3379 163 8 97 chr1 183891331 183891369 -98302295 - MER4E LTR ERV1 -738 41 1 180 143 0 0 chr1 183891600 183891628 -98302036 + L2 LINE L2 3244 3271 -1 2490 112 51 57 chr1 183891727 183892320 -98301344 - MER4B LTR ERV1 0 779 1 1690 173 33 3 chr1 183894062 183894362 -98299302 - AluJo SINE Alu -3 309 1 2264 101 0 0 chr1 183896067 183896363 -98297301 - AluSg SINE Alu -14 296 1 230 240 40 40 chr1 183896483 183896558 -98297106 + L2 LINE L2 3239 3313 0 888 118 0 22 chr1 183896702 183896837 -98296827 + FLAM_C SINE Alu 2 133 0 572 208 0 0 chr1 183896893 183896994 -98296670 + AluSc SINE Alu 103 203 -106 474 316 123 0 chr1 183897616 183897828 -98295836 + MIR SINE MIR 15 252 -10 1946 166 0 3 chr1 183898225 183898527 -98295137 + AluJb SINE Alu 2 302 -10 4566 148 182 13 chr1 183899231 183899671 -98293993 - Tigger3b DNA MER2_type -1797 1231 867 2257 124 0 0 chr1 183899671 183899970 -98293694 - AluSx SINE Alu -13 299 1 4566 148 182 13 chr1 183899970 183900582 -98293082 - Tigger3b DNA MER2_type -2161 867 1 859 193 22 31 chr1 183900737 183900960 -98292704 - L1MD2 LINE L1 -13 6346 6126 25 0 0 0 chr1 183901093 183901118 -98292546 + AT_rich Low_complexity Low_complexity 1 25 0 265 186 186 10 chr1 183901149 183901246 -98292418 - L1ME4a LINE L1 -41 6080 5967 1602 94 0 9 chr1 183901557 183901769 -98291895 + AluSg/x SINE Alu 83 292 -17 2187 115 13 3 chr1 183902006 183902310 -98291354 - AluSq SINE Alu -6 307 1 596 178 93 0 chr1 183902346 183902464 -98291200 - FLAM_C SINE Alu -4 129 1 2314 103 3 0 chr1 183902466 183902777 -98290887 - AluSx SINE Alu 0 312 1 2152 158 83 13 chr1 183902786 183903088 -98290576 - L1MA8 LINE L1 -185 6106 5762 369 0 0 0 chr1 183903088 183903129 -98290535 + (TG)n Simple_repeat Simple_repeat 2 42 0 2152 158 83 13 chr1 183903129 183903274 -98290390 - L1MA8 LINE L1 -529 5762 5628 294 29 0 0 chr1 183903284 183903319 -98290345 + (TA)n Simple_repeat Simple_repeat 2 36 0 502 205 35 60 chr1 183903319 183903519 -98290145 - AluSg/x SINE Alu -7 303 109 1188 118 0 0 chr1 183903811 183903972 -98289692 - AluY SINE Alu -150 161 1 1354 159 9 9 chr1 183904107 183904327 -98289337 + AluSg/x SINE Alu 75 294 -18 1553 188 80 0 chr1 183904409 183904696 -98288968 - AluJb SINE Alu -2 310 1 2101 95 0 11 chr1 183905273 183905556 -98288108 - AluSx SINE Alu -32 280 1 3750 152 38 76 chr1 183905704 183906790 -98286874 - L1MA6 LINE L1 -5 6295 5297 1761 153 87 3 chr1 183906790 183907078 -98286586 - AluJo SINE Alu 0 312 1 3750 152 38 76 chr1 183907078 183907697 -98285967 - L1MA6 LINE L1 -1003 5297 4657 2001 113 46 0 chr1 183908569 183908851 -98284813 - AluSq SINE Alu -18 295 1 216 209 0 0 chr1 183909019 183909062 -98284602 - L2 LINE L2 0 3313 3271 187 418 20 41 chr1 183909087 183909233 -98284431 - L2 LINE L2 -116 3156 3014 247 434 6 6 chr1 183909531 183909690 -98283974 - L2 LINE L2 -548 2766 2608 1205 129 12 0 chr1 183909744 183909915 -98283749 + AluSg/x SINE Alu 125 297 -13 683 222 89 30 chr1 183909924 183910127 -98283537 + MIR SINE MIR 48 262 0 247 206 254 0 chr1 183910147 183910210 -98283454 + L2 LINE L2 3224 3302 -11 195 42 0 0 chr1 183910211 183910235 -98283429 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr1 183910734 183910764 -98282900 + AT_rich Low_complexity Low_complexity 1 30 0 2470 63 3 0 chr1 183911364 183911664 -98282000 + AluY SINE Alu 1 301 -10 195 239 0 0 chr1 183912035 183912102 -98281562 + GA-rich Low_complexity Low_complexity 1 67 0 22 56 0 0 chr1 183912279 183912315 -98281349 + AT_rich Low_complexity Low_complexity 1 36 0 567 319 70 28 chr1 183912388 183912627 -98281037 + L1MC4a LINE L1 5413 5641 -2167 2300 114 3 0 chr1 183912627 183912933 -98280731 + AluSx SINE Alu 1 307 -5 567 319 70 28 chr1 183912933 183913151 -98280513 + L1MC4a LINE L1 5641 5889 -1919 2160 93 35 0 chr1 183913215 183913504 -98280160 + AluSg SINE Alu 1 299 -11 27 0 0 0 chr1 183913998 183914025 -98279639 + AT_rich Low_complexity Low_complexity 1 27 0 1852 113 56 25 chr1 183914025 183914309 -98279355 + AluSx SINE Alu 1 293 -19 2254 98 0 7 chr1 183914317 183914613 -98279051 + AluSg SINE Alu 1 294 -16 1942 146 7 3 chr1 183914645 183914940 -98278724 + AluSx SINE Alu 1 296 -16 198 289 308 10 chr1 183915088 183915192 -98278472 + MIR3 SINE MIR 20 154 -54 522 195 18 31 chr1 183915320 183915498 -98278166 - MER20 DNA MER1_type -1 218 13 1742 168 27 10 chr1 183915507 183915804 -98277860 - AluJb SINE Alu -10 302 1 724 244 154 28 chr1 183916071 183916470 -98277194 - L2 LINE L2 -172 3141 2708 428 218 45 30 chr1 183916923 183917056 -98276608 - Charlie2a DNA MER1_type -1616 1246 1112 916 171 0 26 chr1 183917082 183917234 -98276430 - AluJb SINE Alu -30 282 135 2048 130 0 10 chr1 183917236 183917537 -98276127 - AluSg SINE Alu -12 298 1 332 296 204 7 chr1 183917806 183917958 -98275706 + MER5A DNA MER1_type 8 189 0 29 0 0 0 chr1 183919689 183919718 -98273946 + AT_rich Low_complexity Low_complexity 1 29 0 1086 125 0 12 chr1 183920494 183920681 -98272983 - AluSg/x SINE Alu 0 312 124 21 0 0 0 chr1 183922938 183922959 -98270705 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 183924077 183924102 -98269562 + AT_rich Low_complexity Low_complexity 1 25 0 196 393 0 0 chr1 183925469 183925530 -98268134 + MIR SINE MIR 21 81 -127 809 199 32 21 chr1 183925964 183926150 -98267514 - MER5A DNA MER1_type 0 189 2 310 290 191 6 chr1 183926251 183926413 -98267251 - MIR SINE MIR 0 262 71 226 316 94 57 chr1 183926555 183926799 -98266865 + L2 LINE L2 2638 2890 -424 1933 149 3 3 chr1 183926858 183927160 -98266504 + AluJb SINE Alu 1 302 -10 1262 123 0 0 chr1 183927160 183927339 -98266325 + AluSg/x SINE Alu 132 310 0 346 261 0 34 chr1 183927568 183927656 -98266008 + L2 LINE L2 3188 3272 0 2243 78 11 0 chr1 183927727 183928032 -98265632 - AluSp SINE Alu 0 308 1 1957 123 0 8 chr1 183928177 183928445 -98265219 + AluSx SINE Alu 3 268 -44 231 36 0 0 chr1 183928446 183928474 -98265190 + (TC)n Simple_repeat Simple_repeat 2 29 0 192 77 0 0 chr1 183928473 183928499 -98265165 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 483 128 26 0 chr1 183929094 183929172 -98264492 + AluS SINE Alu 1 80 -233 2101 95 0 11 chr1 183929461 183929744 -98263920 - AluSx SINE Alu -32 280 1 3750 152 38 76 chr1 183929892 183930978 -98262686 - L1MA6 LINE L1 -5 6295 5297 1761 153 87 3 chr1 183930978 183931266 -98262398 - AluJo SINE Alu 0 312 1 3750 152 38 76 chr1 183931266 183931885 -98261779 - L1MA6 LINE L1 -1003 5297 4657 2001 113 46 0 chr1 183932757 183933039 -98260625 - AluSq SINE Alu -18 295 1 216 209 0 0 chr1 183933207 183933250 -98260414 - L2 LINE L2 0 3313 3271 187 418 20 41 chr1 183933275 183933421 -98260243 - L2 LINE L2 -116 3156 3014 247 434 6 6 chr1 183933719 183933878 -98259786 - L2 LINE L2 -548 2766 2608 1205 129 12 0 chr1 183933932 183934103 -98259561 + AluSg/x SINE Alu 125 297 -13 683 222 89 30 chr1 183934112 183934315 -98259349 + MIR SINE MIR 48 262 0 247 206 254 0 chr1 183934335 183934398 -98259266 + L2 LINE L2 3224 3302 -11 195 42 0 0 chr1 183934399 183934423 -98259241 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr1 183934922 183934952 -98258712 + AT_rich Low_complexity Low_complexity 1 30 0 2747 30 0 0 chr1 183935552 183935857 -98257807 + AluYa5 SINE Alu 1 305 -6 3039 45 0 5 chr1 183935857 183936235 -98257429 + L1PA5 LINE L1 5777 6152 -2 217 247 14 0 chr1 183936625 183936698 -98256966 + (TTATA)n Simple_repeat Simple_repeat 4 77 0 344 269 18 58 chr1 183937221 183937392 -98256272 + LTR41 LTR ERVL 600 763 -10 3260 193 55 26 chr1 183937401 183937920 -98255744 - Charlie6 DNA MER1_type -5 3495 2939 2112 117 0 0 chr1 183937920 183938244 -98255420 + AluSx SINE Alu 1 324 0 3260 193 55 26 chr1 183938244 183938574 -98255090 - Charlie6 DNA MER1_type -561 2939 2620 769 151 0 8 chr1 183938607 183938726 -98254938 - FLAM_C SINE Alu -25 118 1 578 211 24 117 chr1 183938727 183938974 -98254690 - Charlie6 DNA MER1_type -909 2591 2368 673 91 0 0 chr1 183938974 183939062 -98254602 + AluS SINE Alu 1 88 -224 396 277 54 23 chr1 183939491 183939621 -98254043 + MIR SINE MIR 14 147 -115 28 61 0 0 chr1 183940656 183940705 -98252959 + AT_rich Low_complexity Low_complexity 1 49 0 258 318 0 0 chr1 183941082 183941145 -98252519 + L2 LINE L2 3186 3248 -24 218 152 22 22 chr1 183941196 183941242 -98252422 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 312 172 0 0 chr1 183941455 183941513 -98252151 + CT-rich Low_complexity Low_complexity 3 60 0 1715 135 49 36 chr1 183941734 183942038 -98251626 - AluJo SINE Alu -2 310 3 198 172 0 47 chr1 183942684 183942748 -98250916 + C-rich Low_complexity Low_complexity 3 63 0 243 266 16 62 chr1 183942779 183942907 -98250757 + CT-rich Low_complexity Low_complexity 6 127 0 1475 171 25 11 chr1 183943449 183943753 -98249911 + AluJb SINE Alu 1 308 0 285 191 162 0 chr1 183945345 183945413 -98248251 + MER5A DNA MER1_type 34 112 -77 187 193 70 53 chr1 183945439 183945496 -98248168 + MER5A DNA MER1_type 18 75 -114 1068 234 0 5 chr1 183945638 183945860 -98247804 + MER58A DNA MER1_type 1 221 -3 23 0 0 0 chr1 183946102 183946125 -98247539 + AT_rich Low_complexity Low_complexity 1 23 0 2127 128 10 3 chr1 183947183 183947489 -98246175 - AluSq SINE Alu -5 308 1 590 256 29 114 chr1 183948199 183948341 -98245323 + MIR SINE MIR 7 117 -145 881 125 0 22 chr1 183948341 183948477 -98245187 + FLAM_C SINE Alu 1 133 0 590 256 29 114 chr1 183948477 183948607 -98245057 + MIR SINE MIR 117 256 -6 2021 109 29 0 chr1 183948625 183948900 -98244764 + AluSx SINE Alu 1 283 -29 305 219 0 0 chr1 183948902 183948966 -98244698 + L1MC4 LINE L1 6640 6703 -1339 240 167 0 0 chr1 183949054 183949102 -98244562 + GA-rich Low_complexity Low_complexity 4 51 0 31 0 0 0 chr1 183949460 183949491 -98244173 + AT_rich Low_complexity Low_complexity 1 31 0 621 86 61 6 chr1 183949491 183949692 -98243972 + (TA)n Simple_repeat Simple_repeat 1 211 0 43 0 0 0 chr1 183949663 183949706 -98243958 + AT_rich Low_complexity Low_complexity 1 43 0 * 784 161 0 23 chr1 183949692 183949822 -98243842 - FLAM_C SINE Alu -6 127 1 2065 122 3 3 chr1 183950064 183950360 -98243304 + AluSx SINE Alu 7 302 -10 330 367 87 7 chr1 183951891 183952041 -98241623 - MIR SINE MIR -81 181 20 412 226 39 10 chr1 183952324 183952426 -98241238 - Charlie1 DNA MER1_type -2656 105 1 1943 145 0 31 chr1 183952572 183952889 -98240775 - AluJo SINE Alu 0 312 6 2107 120 3 23 chr1 183953454 183953755 -98239909 - AluSx SINE Alu -17 295 1 1930 147 3 3 chr1 183953910 183954227 -98239437 - AluJb SINE Alu 0 317 1 238 286 48 0 chr1 183954247 183954310 -98239354 + MIR SINE MIR 41 106 -156 961 151 50 50 chr1 183954421 183954600 -98239064 + AluJo SINE Alu 113 291 -21 2232 90 7 0 chr1 183954892 183955195 -98238469 + AluSc SINE Alu 2 306 0 230 220 40 0 chr1 183955727 183955777 -98237887 + CT-rich Low_complexity Low_complexity 3 54 0 22 80 0 0 chr1 183955788 183955838 -98237826 + AT_rich Low_complexity Low_complexity 1 50 0 260 114 0 0 chr1 183956131 183956166 -98237498 + Alu SINE Alu 6 40 -263 725 125 0 0 chr1 183956166 183956270 -98237394 + AluSg/x SINE Alu 206 309 -1 1161 211 101 126 chr1 183956325 183956569 -98237095 - L2 LINE L2 -427 2887 2638 814 145 14 51 chr1 183956569 183956707 -98236957 + FLAM_C SINE Alu 1 133 0 1161 211 101 126 chr1 183956707 183956910 -98236754 - L2 LINE L2 -676 2638 2454 2277 83 7 0 chr1 183956910 183957210 -98236454 - AluY SINE Alu -9 302 1 1161 211 101 126 chr1 183957210 183957325 -98236339 - L2 LINE L2 -860 2454 2338 716 174 99 0 chr1 183957346 183957467 -98236197 + AluSg SINE Alu 2 134 -176 1591 224 98 32 chr1 183957480 183957887 -98235777 - L2 LINE L2 -1712 1602 1169 248 154 0 92 chr1 183957889 183957954 -98235710 - MLT1E LTR MaLR -109 484 426 * 564 229 25 17 chr1 183957951 183958069 -98235595 - MLT1E LTR MaLR -106 487 369 244 259 0 0 chr1 183958206 183958260 -98235404 - L1M4 LINE L1 -1503 4643 4590 201 309 0 0 chr1 183958769 183958824 -98234840 + (ATG)n Simple_repeat Simple_repeat 3 57 0 2390 88 0 7 chr1 183958838 183959146 -98234518 + AluSx SINE Alu 1 306 -6 242 254 127 14 chr1 183959366 183959437 -98234227 - L2 LINE L2 -8 3305 3227 30 45 0 0 chr1 183959563 183959607 -98234057 + AT_rich Low_complexity Low_complexity 1 44 0 413 234 63 9 chr1 183959639 183959750 -98233914 + L1MC2 LINE L1 6202 6318 -26 30 0 0 0 chr1 183959750 183959780 -98233884 + AT_rich Low_complexity Low_complexity 1 30 0 199 304 18 0 chr1 183960021 183960077 -98233587 + L2 LINE L2 3257 3313 0 184 375 0 0 chr1 183960481 183960561 -98233103 - MIR SINE MIR -77 131 52 433 271 56 42 chr1 183961301 183961445 -98232219 - MER5B DNA MER1_type 0 178 33 180 282 0 0 chr1 183962369 183962408 -98231256 - MER5B DNA MER1_type -123 55 17 1159 139 14 43 chr1 183962544 183962752 -98230912 + AluJb SINE Alu 86 287 -25 2012 130 3 20 chr1 183963528 183963828 -98229836 + AluSq SINE Alu 4 298 -15 1310 125 135 5 chr1 183963897 183964105 -98229559 + AluSx SINE Alu 1 235 -77 1895 170 0 6 chr1 183964304 183964615 -98229049 + AluJb SINE Alu 1 309 -3 465 265 21 95 chr1 183965055 183965147 -98228517 + MIR3 SINE MIR 31 128 -80 1815 134 7 41 chr1 183965147 183965437 -98228227 + AluSx SINE Alu 1 280 -32 237 65 0 0 chr1 183965437 183965468 -98228196 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 465 265 21 95 chr1 183965468 183965563 -98228101 + MIR3 SINE MIR 126 205 -3 2318 98 0 7 chr1 183965634 183965940 -98227724 + AluSg SINE Alu 1 304 -6 904 151 7 0 chr1 183965958 183966104 -98227560 + AluSg/x SINE Alu 147 293 -17 2620 47 0 0 chr1 183966605 183966905 -98226759 + AluY SINE Alu 1 300 -11 253 228 165 25 chr1 183967146 183967225 -98226439 - L1MC4 LINE L1 -18 8024 7935 805 83 0 0 chr1 183967227 183967323 -98226341 - AluSg SINE Alu -213 97 2 207 352 88 8 chr1 183967525 183967650 -98226014 + L2 LINE L2 2373 2507 -807 770 179 0 0 chr1 183967738 183967855 -98225809 - FLAM_C SINE Alu -25 118 2 2281 90 7 7 chr1 183968407 183968707 -98224957 - AluSx SINE Alu -11 301 2 222 62 0 0 chr1 183968717 183968749 -98224915 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1530 176 3 35 chr1 183968751 183969035 -98224629 - AluJb SINE Alu -37 275 1 2181 96 10 3 chr1 183969457 183969750 -98223914 + AluSg SINE Alu 1 295 -15 444 37 0 0 chr1 183969860 183969914 -98223750 + (GA)n Simple_repeat Simple_repeat 1 54 0 492 336 7 0 chr1 183970027 183970176 -98223488 + MIR SINE MIR 63 212 -50 2104 129 3 3 chr1 183970534 183970829 -98222835 + AluSx SINE Alu 1 295 -17 36 23 0 0 chr1 183970920 183970963 -98222701 + AT_rich Low_complexity Low_complexity 1 43 0 2121 138 0 0 chr1 183971817 183972121 -98221543 + AluSx SINE Alu 3 306 -6 2259 101 3 0 chr1 183972318 183972615 -98221049 + AluSp SINE Alu 9 306 -7 2514 37 0 14 chr1 183972911 183973207 -98220457 - AluY SINE Alu -19 292 1 207 0 0 0 chr1 183973326 183973349 -98220315 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2462 92 0 9 chr1 183973396 183973711 -98219953 - AluSx SINE Alu 0 312 1 26 0 0 0 chr1 183974370 183974396 -98219268 + AT_rich Low_complexity Low_complexity 1 26 0 1803 166 0 18 chr1 183974400 183974683 -98218981 + AluJb SINE Alu 5 282 -30 258 32 0 0 chr1 183974686 183974717 -98218947 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 324 0 0 0 chr1 183974821 183974857 -98218807 + (CA)n Simple_repeat Simple_repeat 2 37 0 371 330 0 0 chr1 183975141 183975250 -98218414 + L2 LINE L2 3201 3309 -4 2316 152 62 72 chr1 183975251 183975779 -98217885 - LTR8A LTR ERV1 0 727 205 931 78 0 0 chr1 183975780 183975895 -98217769 - AluSg/x SINE Alu -11 299 185 670 245 35 15 chr1 183975995 183976222 -98217442 + L1ME3 LINE L1 3969 4202 -1944 235 212 30 30 chr1 183976222 183976288 -98217376 - Tigger6b DNA MER2_type -671 926 861 953 222 141 4 chr1 183976289 183976559 -98217105 + L1ME3 LINE L1 4276 4582 -1564 817 182 0 15 chr1 183976652 183976784 -98216880 + FLAM_C SINE Alu 3 132 -1 271 149 0 45 chr1 183976784 183976851 -98216813 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 976 186 15 10 chr1 183976855 183977059 -98216605 + L1ME3 LINE L1 4841 5045 -1101 2312 90 0 16 chr1 183977059 183977369 -98216295 + AluSc SINE Alu 1 305 -4 1055 236 63 11 chr1 183977370 183977641 -98216023 + L1ME3 LINE L1 5325 5609 -557 2218 103 7 7 chr1 183977644 183977936 -98215728 + AluSx SINE Alu 1 292 -20 737 229 132 19 chr1 183977954 183978220 -98215444 + L1ME3 LINE L1 5866 6161 -1 25 0 0 0 chr1 183978248 183978273 -98215391 + AT_rich Low_complexity Low_complexity 1 25 0 358 330 10 10 chr1 183978281 183978381 -98215283 - MIR SINE MIR -148 114 15 449 79 0 16 chr1 183978381 183978444 -98215220 - MADE1 DNA Mariner 0 80 19 2561 40 7 0 chr1 183980131 183980429 -98213235 + AluSp SINE Alu 1 300 -13 485 324 61 30 chr1 183980441 183980771 -98212893 - L1ME4a LINE L1 -246 5875 5522 2247 218 63 52 chr1 183980771 183981390 -98212274 - MLT1E2 LTR MaLR 0 626 1 485 324 61 30 chr1 183981390 183981566 -98212098 - L1ME4a LINE L1 -599 5522 5353 815 257 25 17 chr1 183981757 183981994 -98211670 - HAL1 LINE L1 -878 1629 1391 420 154 119 77 chr1 183982053 183982196 -98211468 - L1MC5 LINE L1 -5 7956 7808 1234 68 0 0 chr1 183982229 183982376 -98211288 - AluSg/x SINE Alu -5 305 159 716 245 14 0 chr1 183982376 183982575 -98211089 - L1M4c LINE L1 -4710 1936 1763 960 114 29 0 chr1 183982593 183982733 -98210931 - AluSp/q SINE Alu -7 306 163 1009 236 31 8 chr1 183982739 183982993 -98210671 - L1M4c LINE L1 -4899 1747 1488 4500 229 50 22 chr1 183982999 183984146 -98209518 - L1M4c LINE L1 -5347 1195 17 295 272 44 155 chr1 183985832 183986038 -98207626 + MIR3 SINE MIR 26 208 0 192 200 0 0 chr1 183986150 183986190 -98207474 + (TA)n Simple_repeat Simple_repeat 2 41 0 777 285 114 0 chr1 183986210 183986438 -98207226 - MIR SINE MIR -5 257 4 183 304 29 29 chr1 183986794 183986863 -98206801 + L2 LINE L2 2896 2964 -349 1815 151 3 7 chr1 183987510 183987824 -98205840 + AluSx SINE Alu 1 313 0 2076 107 11 4 chr1 183988173 183988484 -98205180 - AluSq SINE Alu 0 313 1 1764 99 0 0 chr1 183988576 183988824 -98204840 - AluSg SINE Alu 0 311 64 219 200 0 0 chr1 183988825 183988865 -98204799 - L2 LINE L2 -8 3305 3266 * 271 252 124 47 chr1 183988831 183988967 -98204697 - MIR3 SINE MIR -8 254 79 1664 166 3 7 chr1 183988979 183989286 -98204378 - AluSx SINE Alu 0 307 2 270 56 0 0 chr1 183989286 183989322 -98204342 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 2273 85 7 0 chr1 183989463 183989756 -98203908 - AluSp SINE Alu -18 295 1 595 208 55 132 chr1 183990630 183990795 -98202869 - L1MC4 LINE L1 -1 8041 7906 1925 161 0 16 chr1 183990795 183991106 -98202558 - AluJb SINE Alu -1 311 6 595 208 55 132 chr1 183991106 183991229 -98202435 - L1MC4 LINE L1 -136 7906 7775 230 196 18 18 chr1 183991227 183991283 -98202381 - L1MC4a LINE L1 -1340 6468 6413 * 405 296 46 42 chr1 183991320 183991497 -98202167 - L1 LINE L1 -1675 4471 4291 2067 122 75 36 chr1 183991497 183991648 -98202016 + THE1C LTR MaLR 1 145 -230 2357 88 10 0 chr1 183991648 183991943 -98201721 - AluSg SINE Alu -11 299 2 2067 122 75 36 chr1 183991943 183992152 -98201512 + THE1C LTR MaLR 145 375 0 405 296 46 42 chr1 183992152 183992258 -98201406 - L1 LINE L1 -1855 4291 4187 32 43 0 0 chr1 183992265 183992311 -98201353 + AT_rich Low_complexity Low_complexity 1 46 0 478 311 147 0 chr1 183992695 183992872 -98200792 - MIR SINE MIR -13 249 47 319 283 199 9 chr1 183992906 183993096 -98200568 - MIR SINE MIR 0 262 38 212 233 122 11 chr1 183993526 183993616 -98200048 - MIR3 SINE MIR -27 181 82 32 0 0 0 chr1 183994234 183994266 -98199398 + GC_rich Low_complexity Low_complexity 1 32 0 34 24 0 0 chr1 183994395 183994436 -98199228 + GC_rich Low_complexity Low_complexity 1 41 0 2458 69 0 7 chr1 183996110 183996415 -98197249 - AluSc SINE Alu -6 303 1 24 0 0 0 chr1 183996854 183996878 -98196786 + AT_rich Low_complexity Low_complexity 1 24 0 401 225 0 12 chr1 183997028 183997108 -98196556 - MIR SINE MIR -86 176 98 180 369 82 31 chr1 183997273 183997528 -98196136 + L2 LINE L2 2553 2820 -494 1374 190 118 0 chr1 183997635 183997898 -98195766 - AluJb SINE Alu -18 294 1 715 244 127 0 chr1 183998407 183998604 -98195060 + MIR SINE MIR 14 235 -27 2208 118 0 3 chr1 183999383 183999680 -98193984 - AluSx SINE Alu -16 296 1 1995 137 10 7 chr1 184000542 184000848 -98192816 - AluSx SINE Alu -3 309 3 2238 118 0 0 chr1 184001406 184001710 -98191954 - AluSx SINE Alu -8 304 1 436 171 61 116 chr1 184001721 184001778 -98191886 - L1ME2 LINE L1 -2 6162 6103 1646 138 8 20 chr1 184001778 184002031 -98191633 - AluSx SINE Alu -15 297 48 1776 103 129 0 chr1 184002041 184002313 -98191351 - AluSx SINE Alu -5 307 1 436 171 61 116 chr1 184002313 184002408 -98191256 - L1ME2 LINE L1 -70 6094 6008 22 70 0 0 chr1 184002783 184002826 -98190838 + AT_rich Low_complexity Low_complexity 1 43 0 1653 166 57 20 chr1 184003833 184004012 -98189652 - AluJb SINE Alu 0 312 116 2262 105 3 0 chr1 184004012 184004306 -98189358 - AluSg SINE Alu -15 295 1 1653 166 57 20 chr1 184004306 184004427 -98189237 - AluJb SINE Alu -196 116 1 407 248 142 9 chr1 184005157 184005270 -98188394 - L2 LINE L2 -1 3312 3185 2246 100 0 19 chr1 184006252 184006563 -98187101 - AluSx SINE Alu -7 305 1 305 340 68 0 chr1 184006799 184006902 -98186762 - MER91C DNA MER1_type -30 110 1 685 345 94 29 chr1 184008053 184008404 -98185260 + L3 LINE CR1 278 651 -926 273 270 70 62 chr1 184008577 184008836 -98184828 + L1M4 LINE L1 4585 4845 -1301 189 0 0 0 chr1 184009082 184009103 -98184561 + (TC)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr1 184009238 184009259 -98184405 + AT_rich Low_complexity Low_complexity 1 21 0 2136 123 0 10 chr1 184009436 184009736 -98183928 - AluSc SINE Alu -12 297 1 2051 123 7 0 chr1 184009987 184010297 -98183367 - AluSq SINE Alu 0 312 1 941 211 0 6 chr1 184010301 184010476 -98183188 - AluSg/x SINE Alu -17 293 120 1941 142 31 0 chr1 184010627 184010916 -98182748 + AluSx SINE Alu 1 298 -14 2261 126 3 0 chr1 184011978 184012287 -98181377 + AluSx SINE Alu 1 310 -2 3600 132 29 10 chr1 184012514 184013031 -98180633 - MER1A DNA MER1_type 0 527 1 2225 121 0 3 chr1 184014351 184014664 -98179000 - AluSx SINE Alu 0 312 1 23 0 0 0 chr1 184014666 184014689 -98178975 + AT_rich Low_complexity Low_complexity 1 23 0 2203 105 3 0 chr1 184014692 184014986 -98178678 - AluSx SINE Alu -17 295 1 916 225 5 29 chr1 184015654 184015863 -98177801 + MER3 DNA MER1_type 6 209 0 199 318 0 0 chr1 184015935 184015979 -98177685 + L2 LINE L2 3210 3253 -19 993 154 28 0 chr1 184016411 184016593 -98177071 + L1MA7 LINE L1 6105 6291 0 944 130 7 27 chr1 184016596 184016742 -98176922 + FLAM_C SINE Alu 1 143 0 1578 134 0 9 chr1 184017243 184017475 -98176189 + AluSq SINE Alu 1 230 -83 1163 212 18 36 chr1 184018517 184018739 -98174925 + MER20 DNA MER1_type 2 219 0 230 320 120 0 chr1 184020305 184020405 -98173259 - L2 LINE L2 -23 3290 3179 260 100 100 0 chr1 184020528 184020568 -98173096 - MLT2B1 LTR ERVL 0 520 477 * 321 71 0 0 chr1 184020566 184020608 -98173056 - MADE1 DNA Mariner -34 46 5 2943 121 76 0 chr1 184020609 184021056 -98172608 - MLT2B1 LTR ERVL -39 481 1 2203 108 24 0 chr1 184021106 184021403 -98172261 - AluSq SINE Alu -9 304 1 683 212 94 24 chr1 184021568 184021738 -98171926 + MER5A DNA MER1_type 8 189 0 2046 99 0 7 chr1 184021775 184022057 -98171607 - L1PA16 LINE L1 -272 5894 5615 1474 133 42 57 chr1 184022057 184022312 -98171352 + L1PA16 LINE L1 5899 6157 -9 2147 82 44 14 chr1 184022497 184022791 -98170873 + AluSg SINE Alu 1 303 -7 411 322 34 28 chr1 184022829 184023006 -98170658 - MER5B DNA MER1_type 0 178 1 2293 112 0 0 chr1 184023382 184023686 -98169978 + AluSx SINE Alu 1 304 -8 33 43 0 0 chr1 184024497 184024544 -98169120 + AT_rich Low_complexity Low_complexity 1 47 0 1715 160 6 51 chr1 184024550 184024718 -98168946 - AluJo SINE Alu -13 299 150 1935 90 4 38 chr1 184024718 184024985 -98168679 - AluSp SINE Alu -15 298 41 1715 160 6 51 chr1 184024985 184025129 -98168535 - AluJo SINE Alu -162 150 1 908 248 48 9 chr1 184025219 184025449 -98168215 - MIR SINE MIR -4 258 20 189 175 0 0 chr1 184025664 184025704 -98167960 + (TATATG)n Simple_repeat Simple_repeat 4 43 0 1702 159 26 0 chr1 184025706 184025976 -98167688 - AluJo SINE Alu -31 281 5 360 158 27 189 chr1 184025997 184026077 -98167587 - L1MC5 LINE L1 -294 7667 7576 1926 140 7 7 chr1 184026077 184026377 -98167287 - AluJb SINE Alu -12 300 1 360 158 27 189 chr1 184026377 184026555 -98167109 - L1MC5 LINE L1 -385 7576 7451 469 206 243 5 chr1 184027988 184028012 -98165652 - L1ME4a LINE L1 -3 6118 6101 2461 77 0 0 chr1 184028012 184028309 -98165355 + AluY SINE Alu 1 297 -14 469 206 243 5 chr1 184028309 184028473 -98165191 - L1ME4a LINE L1 -20 6101 5885 397 226 80 47 chr1 184028533 184028745 -98164919 - L1MC5 LINE L1 -80 7881 7663 2191 117 3 3 chr1 184029265 184029573 -98164091 - AluSx SINE Alu -4 308 1 647 184 222 53 chr1 184030900 184031107 -98162557 + MER46C DNA MER2_type 94 335 -3 439 231 157 14 chr1 184031444 184031591 -98162073 + MIR SINE MIR 2 169 -93 1927 164 3 0 chr1 184031827 184032126 -98161538 + AluSx SINE Alu 1 300 -12 2379 119 0 0 chr1 184032225 184032537 -98161127 - AluSx SINE Alu 0 312 1 538 277 13 13 chr1 184033166 184033325 -98160339 - MIR SINE MIR -2 260 102 222 334 1 62 chr1 184033397 184033475 -98160189 - MIR SINE MIR -94 114 40 2416 65 10 0 chr1 184033475 184033766 -98159898 - AluSx SINE Alu -7 305 12 222 334 1 62 chr1 184033766 184033804 -98159860 - MIR SINE MIR -168 40 1 499 301 188 21 chr1 184034743 184034878 -98158786 - L2 LINE L2 0 3313 3202 1660 167 20 17 chr1 184034878 184035172 -98158492 - AluJo SINE Alu -17 295 1 499 301 188 21 chr1 184035172 184035372 -98158292 - L2 LINE L2 -111 3202 2922 625 259 159 38 chr1 184035647 184036114 -98157550 + LTR50 LTR ERVL 17 635 -160 381 204 31 31 chr1 184036127 184036225 -98157439 + LTR33A LTR ERVL 420 517 -6 432 286 123 0 chr1 184038015 184038218 -98155446 + L3b LINE CR1 1303 1530 -53 378 313 50 45 chr1 184038509 184038710 -98154954 + MIR SINE MIR 20 221 -41 639 233 100 0 chr1 184039097 184039260 -98154404 + MIR SINE MIR 59 234 -28 2224 108 7 0 chr1 184039890 184040219 -98153445 + AluSq SINE Alu 1 313 0 353 171 24 0 chr1 184040773 184040855 -98152809 + GA-rich Low_complexity Low_complexity 2 85 0 210 368 93 28 chr1 184041133 184041315 -98152349 - L3b LINE CR1 -19 1564 1371 180 262 115 33 chr1 184042326 184042387 -98151277 + L2 LINE L2 3240 3305 -8 311 276 58 51 chr1 184042442 184042598 -98151066 - L3b LINE CR1 -325 1258 1102 396 0 0 0 chr1 184042726 184042770 -98150894 + (TG)n Simple_repeat Simple_repeat 1 44 0 454 326 53 21 chr1 184044994 184045181 -98148483 - MIR3 SINE MIR -12 196 4 1483 146 9 105 chr1 184045465 184045598 -98148066 + L1MC1 LINE L1 6025 6169 -164 2367 92 0 0 chr1 184045598 184045893 -98147771 - AluSg SINE Alu -15 295 1 1483 146 9 105 chr1 184045893 184046101 -98147563 + L1MC1 LINE L1 6169 6333 0 1105 207 10 0 chr1 184046412 184046605 -98147059 - AluJo SINE Alu -113 199 5 308 364 0 39 chr1 184046641 184046770 -98146894 + MIR SINE MIR 17 140 -68 187 281 70 35 chr1 184046898 184047012 -98146652 + L2 LINE L2 2945 3062 -210 2226 97 3 31 chr1 184047489 184047810 -98145854 - AluSx SINE Alu 0 312 1 2084 99 0 56 chr1 184047813 184048143 -98145521 - AluSp SINE Alu 0 313 1 2197 107 3 0 chr1 184049036 184049334 -98144330 - AluSx SINE Alu -13 299 1 2169 116 10 0 chr1 184050156 184050449 -98143215 - AluSx SINE Alu -16 296 1 23 0 0 0 chr1 184051044 184051067 -98142597 + AT_rich Low_complexity Low_complexity 1 23 0 371 332 108 9 chr1 184051941 184052155 -98141509 - MIR SINE MIR -16 246 12 479 193 59 102 chr1 184052262 184052449 -98141215 - MER5A DNA MER1_type 0 189 11 3885 143 8 11 chr1 184052940 184053577 -98140087 - MER41B LTR ERV1 0 635 1 507 258 44 0 chr1 184054697 184054856 -98138808 + MER103 DNA DNA 1 166 0 371 214 60 12 chr1 184054971 184055055 -98138609 + MIR SINE MIR 45 132 -76 494 245 9 9 chr1 184055406 184055512 -98138152 + MIR3 SINE MIR 55 160 -48 2052 110 0 0 chr1 184105614 184105887 -98087777 - AluSx SINE Alu -39 273 1 1621 142 26 84 chr1 184105936 184106245 -98087419 - AluSx SINE Alu -17 295 5 642 297 19 17 chr1 184106257 184106571 -98087093 - L1MC5 LINE L1 -929 6879 6558 504 244 79 24 chr1 184107064 184107262 -98086402 + MIR SINE MIR 34 232 -30 225 0 0 0 chr1 184107531 184107556 -98086108 + (T)n Simple_repeat Simple_repeat 1 25 0 258 229 33 0 chr1 184107848 184107909 -98085755 + L2 LINE L2 3208 3270 -2 203 339 0 0 chr1 184108635 184108697 -98084967 + L2 LINE L2 2992 3053 -219 2204 91 28 0 chr1 184108836 184109123 -98084541 - AluSx SINE Alu -17 295 1 5889 165 56 11 chr1 184109123 184110315 -98083349 - L1MC3 LINE L1 -21 7764 6519 301 299 104 56 chr1 184111645 184111876 -98081788 - MLT1H LTR MaLR -198 351 110 1932 238 58 26 chr1 184111960 184112577 -98081087 - L1ME3A LINE L1 -23 6147 5511 27 0 0 0 chr1 184113778 184113805 -98079859 + AT_rich Low_complexity Low_complexity 1 27 0 317 361 6 42 chr1 184114558 184114724 -98078940 + MIR3 SINE MIR 47 206 -2 731 231 17 17 chr1 184115919 184116092 -98077572 - MIR3 SINE MIR -6 202 30 222 133 33 33 chr1 184116617 184116677 -98076987 + (TG)n Simple_repeat Simple_repeat 2 61 0 618 246 82 78 chr1 184116952 184117184 -98076480 - MIR SINE MIR -10 252 20 1769 157 61 0 chr1 184117246 184117539 -98076125 - AluJb SINE Alu -1 311 1 247 222 111 0 chr1 184117787 184117841 -98075823 - MIR3 SINE MIR -48 160 101 438 283 133 6 chr1 184117881 184118054 -98075610 + MIR SINE MIR 60 254 -8 21 82 0 0 chr1 184118138 184118187 -98075477 + AT_rich Low_complexity Low_complexity 1 49 0 200 99 55 44 chr1 184118895 184118986 -98074678 + (TATAA)n Simple_repeat Simple_repeat 4 95 0 * 498 212 31 0 chr1 184118980 184119414 -98074250 + (TA)n Simple_repeat Simple_repeat 1 447 0 21 36 0 0 chr1 184119421 184119449 -98074215 + AT_rich Low_complexity Low_complexity 1 28 0 472 223 11 0 chr1 184119449 184119624 -98074040 + (TA)n Simple_repeat Simple_repeat 2 178 0 315 105 0 0 chr1 184119631 184119688 -98073976 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 296 224 17 0 chr1 184119737 184119795 -98073869 - L2 LINE L2 -6 3266 3208 557 157 0 23 chr1 184120073 184120245 -98073419 + (TA)n Simple_repeat Simple_repeat 1 168 0 314 244 47 0 chr1 184120253 184120339 -98073325 + L1MC4 LINE L1 6614 6703 -1339 504 244 79 24 chr1 184121156 184121354 -98072310 + MIR SINE MIR 34 232 -30 225 0 0 0 chr1 184121624 184121649 -98072015 + (T)n Simple_repeat Simple_repeat 1 25 0 296 224 17 0 chr1 184121940 184121998 -98071666 + L2 LINE L2 3208 3266 -6 259 0 98 0 chr1 184122047 184122088 -98071576 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2128 94 7 0 chr1 184122094 184122370 -98071294 - AluSp SINE Alu -35 278 1 21 57 0 0 chr1 184122370 184122405 -98071259 + AT_rich Low_complexity Low_complexity 1 35 0 215 197 0 61 chr1 184123676 184123742 -98069922 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 391 240 220 0 chr1 184123813 184123963 -98069701 - MIR SINE MIR 0 262 80 286 340 24 26 chr1 184124118 184124250 -98069414 - MIR SINE MIR -73 135 7 561 307 22 17 chr1 184124760 184124939 -98068725 + MIR3 SINE MIR 20 199 -9 402 299 109 0 chr1 184126328 184126465 -98067199 + L2 LINE L2 3162 3313 0 944 334 85 40 chr1 184126681 184127403 -98066261 - L2 LINE L2 -9 3263 2492 744 225 11 47 chr1 184127704 184127895 -98065769 - MER5A DNA MER1_type -3 186 3 380 374 21 11 chr1 184128417 184128604 -98065060 - MER5A DNA MER1_type 0 189 1 315 333 34 27 chr1 184128604 184128751 -98064913 - MIR3 SINE MIR -37 171 24 180 337 36 0 chr1 184128850 184128933 -98064731 + MIR SINE MIR 177 262 0 614 210 13 32 chr1 184128938 184129095 -98064569 - MER104 DNA Tc2 -4 176 23 394 222 148 19 chr1 184129160 184129268 -98064396 - L2 LINE L2 -363 2951 2830 248 91 136 0 chr1 184129283 184129327 -98064337 - L1P4 LINE L1 -428 5738 5689 377 104 19 15 chr1 184129330 184129412 -98064252 - L1PA10 LINE L1 -334 5834 5753 222 206 0 0 chr1 184129413 184129481 -98064183 + T-rich Low_complexity Low_complexity 1 68 0 6849 15 1 0 chr1 184129488 184130307 -98063357 - L1PA2 LINE L1 -2 6153 5334 * 10955 21 0 0 chr1 184130304 184131646 -98062018 + L1PA2 LINE L1 4010 5351 -795 2082 115 28 0 chr1 184131647 184131934 -98061730 - AluSx SINE Alu -17 295 1 526 82 0 0 chr1 184131934 184132007 -98061657 - L1PA10 LINE L1 -386 5780 5708 672 293 161 28 chr1 184132007 184132331 -98061333 - L2 LINE L2 -578 2736 2370 26 0 0 0 chr1 184132394 184132420 -98061244 + AT_rich Low_complexity Low_complexity 1 26 0 919 276 101 31 chr1 184132708 184133066 -98060598 + L2 LINE L2 2868 3250 -63 204 227 0 125 chr1 184133377 184133415 -98060249 + MIR SINE MIR 101 142 -120 1185 146 108 0 chr1 184133415 184133487 -98060177 - MER46A DNA MER2_type -2495 236 173 1269 56 0 0 chr1 184133487 184133649 -98060015 + (TATAA)n Simple_repeat Simple_repeat 4 165 0 1185 146 108 0 chr1 184133649 184133789 -98059875 - MER46A DNA MER2_type -2558 173 1 204 227 0 125 chr1 184133789 184133878 -98059786 + MIR SINE MIR 142 212 -50 2261 158 16 59 chr1 184134575 184135019 -98058645 - MSTB LTR MaLR 0 426 2 2755 64 6 11 chr1 184135025 184135382 -98058282 - THE1A LTR MaLR 0 355 1 1205 216 36 38 chr1 184136030 184136395 -98057269 - L1ME1 LINE L1 -4 6162 5799 1552 206 15 0 chr1 184136483 184136822 -98056842 - L1MB1 LINE L1 -11 6157 5814 1294 50 0 0 chr1 184136845 184137005 -98056659 - L1PA7 LINE L1 -1 6153 5994 3035 182 42 15 chr1 184137006 184138207 -98055457 - L1MB1 LINE L1 -340 5828 4598 332 290 21 0 chr1 184138214 184138307 -98055357 - L1MEc LINE L1 -5501 895 801 37799 71 10 11 chr1 184138337 184144482 -98049182 + L1PA6 LINE L1 14 6151 -3 343 152 15 0 chr1 184144495 184144561 -98049103 + MER53 DNA DNA 122 188 -1 1105 241 22 6 chr1 184144564 184144875 -98048789 - L1MEc LINE L1 -6046 350 35 242 313 28 83 chr1 184149219 184149363 -98044301 - L2 LINE L2 0 3272 3137 257 358 8 22 chr1 184149602 184149736 -98043928 - L2 LINE L2 -206 3066 2935 200 176 0 0 chr1 184149888 184149922 -98043742 + GA-rich Low_complexity Low_complexity 3 36 0 228 362 112 19 chr1 184149965 184150277 -98043387 - L2 LINE L2 -562 2752 2412 * 251 235 0 0 chr1 184150274 184150325 -98043339 - L2 LINE L2 0 3313 3263 184 339 36 0 chr1 184150393 184150505 -98043159 - L2 LINE L2 -942 2372 2257 34 24 0 0 chr1 184151478 184151519 -98042145 + AT_rich Low_complexity Low_complexity 1 41 0 302 289 44 0 chr1 184152420 184152510 -98041154 + MIR3 SINE MIR 67 160 -48 470 171 34 17 chr1 184152550 184152667 -98040997 - ORSL DNA AcHobo -7 268 150 261 0 0 0 chr1 184152688 184152717 -98040947 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 316 0 0 chr1 184152749 184152847 -98040817 - L1MC4 LINE L1 -1341 6701 6604 384 214 0 0 chr1 184152847 184152964 -98040700 + (TA)n Simple_repeat Simple_repeat 2 118 0 323 268 76 32 chr1 184153040 184153197 -98040467 + MIR3 SINE MIR 45 208 0 22 0 0 0 chr1 184154038 184154060 -98039604 + AT_rich Low_complexity Low_complexity 1 22 0 535 243 68 109 chr1 184154122 184155181 -98038483 - L1MC5 LINE L1 -50 7911 6810 2102 117 0 3 chr1 184155181 184155472 -98038192 - AluSx SINE Alu -22 290 1 535 243 68 109 chr1 184155472 184155521 -98038143 - L1MC5 LINE L1 -1151 6810 6761 1875 121 26 59 chr1 184155521 184155826 -98037838 - AluSx SINE Alu -17 295 1 535 243 68 109 chr1 184155826 184156148 -98037516 - L1MC5 LINE L1 -1200 6761 6558 195 42 0 0 chr1 184156720 184156744 -98036920 + (A)n Simple_repeat Simple_repeat 1 24 0 1851 163 0 0 chr1 184156907 184157184 -98036480 + AluJb SINE Alu 35 311 -1 21 0 0 0 chr1 184157631 184157652 -98036012 + AT_rich Low_complexity Low_complexity 1 21 0 277 288 43 25 chr1 184158118 184158281 -98035383 + MER112 DNA MER1_type 88 253 -7 2127 121 10 0 chr1 184159083 184159380 -98034284 + AluSg SINE Alu 5 304 -6 329 352 0 19 chr1 184159958 184160063 -98033601 - MER5B DNA MER1_type -74 104 2 345 24 0 0 chr1 184160140 184160182 -98033482 + (TG)n Simple_repeat Simple_repeat 2 43 0 222 333 27 0 chr1 184161785 184161860 -98031804 - L2 LINE L2 -8 3305 3229 223 282 86 43 chr1 184163126 184163243 -98030421 - MIR3 SINE MIR -32 176 55 217 320 51 0 chr1 184167782 184167860 -98025804 - L2 LINE L2 -5 3267 3186 418 372 72 21 chr1 184169156 184169532 -98024132 - HAL1b LINE L1 -586 762 368 377 264 76 39 chr1 184169600 184169930 -98023734 - L1ME4a LINE L1 -105 6016 5675 244 306 10 117 chr1 184170012 184170164 -98023500 + MIR SINE MIR 4 132 -130 1733 180 44 0 chr1 184170164 184170458 -98023206 + 7SLRNA srpRNA srpRNA 5 311 -9 244 306 10 117 chr1 184170458 184170501 -98023163 + MIR SINE MIR 132 178 -84 645 339 52 7 chr1 184173718 184174025 -98019639 + L3 LINE CR1 1254 1574 -3 485 319 11 55 chr1 184174529 184174711 -98018953 + MIR3 SINE MIR 17 190 -18 23 33 0 0 chr1 184175167 184175197 -98018467 + AT_rich Low_complexity Low_complexity 1 30 0 641 228 69 0 chr1 184177141 184177343 -98016321 - L1MD3 LINE L1 -9 7986 7771 184 273 0 0 chr1 184178021 184178065 -98015599 + L2 LINE L2 3263 3306 -7 23 33 0 0 chr1 184179781 184179811 -98013853 + AT_rich Low_complexity Low_complexity 1 30 0 2195 94 3 47 chr1 184180330 184180465 -98013199 + AluSx SINE Alu 1 140 -172 270 81 0 0 chr1 184180465 184180502 -98013162 + (TA)n Simple_repeat Simple_repeat 1 37 0 2195 94 3 47 chr1 184180502 184180685 -98012979 + AluSx SINE Alu 140 305 -7 289 148 98 0 chr1 184180958 184181019 -98012645 + MER5C DNA MER1_type 54 120 -204 3932 104 17 27 chr1 184181019 184181405 -98012259 - MER51C LTR ERV1 0 640 280 4544 69 59 5 chr1 184181405 184182031 -98011633 + PABL_A LTR ERV1 1 660 0 3932 104 17 27 chr1 184182031 184182309 -98011355 - MER51C LTR ERV1 -360 280 1 623 182 176 0 chr1 184182310 184182486 -98011178 + MER5C DNA MER1_type 118 324 0 2366 90 0 13 chr1 184185448 184185758 -98007906 - AluSg SINE Alu -4 306 1 264 108 0 0 chr1 184185842 184185879 -98007785 - Alu SINE Alu -271 37 1 235 189 0 0 chr1 184185967 184186004 -98007660 - Alu SINE Alu -264 37 1 238 277 43 92 chr1 184186190 184186331 -98007333 - MIR3 SINE MIR -65 143 10 21 36 0 0 chr1 184186490 184186518 -98007146 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 184188874 184188902 -98004762 + AT_rich Low_complexity Low_complexity 1 28 0 5816 159 34 29 chr1 184190547 184191139 -98002525 - L1MC3 LINE L1 -27 7758 7170 2317 106 6 0 chr1 184191139 184191450 -98002214 + AluSp SINE Alu 1 313 0 5816 159 34 29 chr1 184191450 184192094 -98001570 - L1MC3 LINE L1 -615 7170 6516 598 272 77 20 chr1 184192600 184192846 -98000818 - MIR SINE MIR -1 261 2 187 344 16 0 chr1 184193168 184193229 -98000435 - L2 LINE L2 -5 3267 3206 1878 140 47 4 chr1 184193412 184193691 -97999973 - AluSx SINE Alu -21 291 1 708 274 121 5 chr1 184193717 184193907 -97999757 + MIR SINE MIR 17 228 -34 381 344 6 11 chr1 184193914 184194094 -97999570 + (TG)n Simple_repeat Simple_repeat 2 180 0 207 239 57 0 chr1 184195063 184195151 -97998513 + A-rich Low_complexity Low_complexity 2 94 0 204 349 61 0 chr1 184195602 184195668 -97997996 + L2 LINE L2 3197 3266 -47 291 322 0 17 chr1 184197259 184197374 -97996290 - MER117 DNA MER1_type -52 145 33 381 317 196 40 chr1 184198018 184198371 -97995293 + L2 LINE L2 2860 3267 -5 268 218 27 64 chr1 184198892 184199002 -97994662 - MER103 DNA DNA -11 155 50 298 197 0 30 chr1 184199278 184199344 -97994320 + MIR3 SINE MIR 121 184 -24 25366 39 7 1 chr1 184199393 184203807 -97989857 - L1PA5 LINE L1 0 6154 1720 455 246 7 28 chr1 184203970 184204112 -97989552 - MLT1J LTR MaLR -24 487 349 393 253 121 39 chr1 184204173 184204355 -97989309 - MLT1J LTR MaLR -265 246 50 1848 146 7 11 chr1 184204821 184205108 -97988556 + AluJb SINE Alu 1 286 -26 24 0 0 0 chr1 184205112 184205136 -97988528 + AT_rich Low_complexity Low_complexity 1 24 0 2228 110 0 0 chr1 184205317 184205609 -97988055 + AluSg SINE Alu 1 292 -18 281 311 11 56 chr1 184206631 184206811 -97986853 + MIR SINE MIR 65 236 -26 293 254 55 133 chr1 184206954 184207135 -97986529 + MIR SINE MIR 9 175 -87 254 213 148 0 chr1 184207515 184207576 -97986088 - L2 LINE L2 0 3313 3244 280 259 64 62 chr1 184207577 184207812 -97985852 + L1MEd LINE L1 1076 1353 -4862 815 168 0 0 chr1 184207861 184207986 -97985678 + FLAM_C SINE Alu 3 127 -16 2908 238 41 22 chr1 184207992 184209055 -97984609 - L1M4 LINE L1 -2365 3781 2698 338 269 19 46 chr1 184209058 184209166 -97984498 - L1ME LINE L1 -5926 144 40 510 276 117 53 chr1 184209498 184209763 -97983901 + L2 LINE L2 3032 3313 0 2514 188 78 3 chr1 184211095 184211663 -97982001 + LTR31 LTR ERV1 1 610 -9 959 192 157 91 chr1 184212485 184212971 -97980693 + MLT1E2 LTR MaLR 115 626 0 641 246 96 61 chr1 184213167 184213437 -97980227 + L1MC/D LINE L1 5391 5681 -2127 893 279 30 15 chr1 184213437 184213770 -97979894 - MER46C DNA MER2_type 0 338 1 641 246 96 61 chr1 184213770 184213894 -97979770 + L1MC/D LINE L1 5681 5799 -2009 215 125 25 0 chr1 184214026 184214066 -97979598 + (CATA)n Simple_repeat Simple_repeat 2 42 0 274 43 0 22 chr1 184214652 184214698 -97978966 - AluSc SINE Alu -1 298 254 815 279 86 0 chr1 184215998 184216220 -97977444 - MIR SINE MIR -21 241 1 207 0 0 0 chr1 184216235 184216258 -97977406 + (TC)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr1 184217061 184217089 -97976575 + AT_rich Low_complexity Low_complexity 1 28 0 1757 135 59 20 chr1 184217824 184218122 -97975542 + L1MB3 LINE L1 5828 6142 -41 1615 108 0 0 chr1 184218122 184218335 -97975329 - AluSp SINE Alu -16 297 85 1757 135 59 20 chr1 184218335 184218377 -97975287 + L1MB3 LINE L1 6142 6181 -2 2959 179 49 16 chr1 184218379 184219480 -97974184 - L1M3 LINE L1 -361 5822 4674 385 309 70 43 chr1 184219481 184219561 -97974103 + L1M3 LINE L1 4606 4682 -1464 1622 125 73 62 chr1 184219561 184219737 -97973927 - AluSx SINE Alu -20 292 110 1825 159 7 19 chr1 184219737 184220045 -97973619 + AluSx SINE Alu 1 304 -8 1622 125 73 62 chr1 184220045 184220157 -97973507 - AluSx SINE Alu -202 110 1 385 309 70 43 chr1 184220157 184220306 -97973358 + L1M4 LINE L1 4682 4841 -1305 203 258 32 0 chr1 184220435 184220497 -97973167 + (TAAA)n Simple_repeat Simple_repeat 2 65 0 342 281 70 0 chr1 184220688 184220909 -97972755 + L1P4 LINE L1 5254 5490 -675 1463 158 35 51 chr1 184221106 184221422 -97972242 + MSTC LTR MaLR 118 428 0 976 126 33 4 chr1 184221763 184222027 -97971637 + CT-rich Low_complexity Low_complexity 1 271 0 2202 102 7 13 chr1 184222027 184222332 -97971332 - AluSx SINE Alu -9 303 1 681 295 25 25 chr1 184223195 184223395 -97970269 + MIR SINE MIR 5 204 -58 1008 281 78 24 chr1 184223701 184223809 -97969855 - MLT1J1 LTR MaLR 0 446 345 4183 81 2 0 chr1 184223809 184224362 -97969302 + MER41A LTR ERV1 1 554 0 1008 281 78 24 chr1 184224362 184224663 -97969001 - MLT1J1 LTR MaLR -101 345 15 186 273 0 0 chr1 184224741 184224785 -97968879 + L2 LINE L2 3210 3253 -19 324 271 158 30 chr1 184225453 184225586 -97968078 - MIR SINE MIR -29 233 84 480 112 101 0 chr1 184225656 184225745 -97967919 + MER4A LTR ERV1 1 98 -566 1509 108 22 110 chr1 184225754 184226124 -97967540 + MER4A LTR ERV1 269 664 0 376 256 60 15 chr1 184226446 184226579 -97967085 - Charlie1 DNA MER1_type -2570 191 53 2025 206 62 2 chr1 184226846 184227278 -97966386 - LTR32 LTR ERVL 0 471 14 2022 123 3 57 chr1 184228674 184228992 -97964672 - AluSq SINE Alu -12 301 1 25 31 0 0 chr1 184229808 184229840 -97963824 + AT_rich Low_complexity Low_complexity 1 32 0 36 108 0 0 chr1 184230091 184230239 -97963425 + AT_rich Low_complexity Low_complexity 1 148 0 2220 190 70 82 chr1 184230854 184231553 -97962111 + LTR8 LTR ERV1 1 691 0 622 174 26 22 chr1 184232088 184232318 -97961346 + GA-rich Low_complexity Low_complexity 1 231 0 2568 33 0 7 chr1 184232318 184232618 -97961046 + AluY SINE Alu 1 298 -13 395 342 0 0 chr1 184234172 184234286 -97959378 + MLT1E LTR MaLR 1 114 -479 1757 197 73 11 chr1 184234323 184234694 -97958970 + MLT1E LTR MaLR 200 593 0 2727 153 15 68 chr1 184234694 184235236 -97958428 + MLT2B3 LTR ERVL 42 554 0 330 204 155 0 chr1 184235236 184235339 -97958325 - L1MC5 LINE L1 -235 7726 7608 190 269 45 30 chr1 184236219 184236286 -97957378 - MIR SINE MIR -56 152 85 394 329 90 7 chr1 184236554 184236709 -97956955 - MIR3 SINE MIR -15 193 26 676 253 16 100 chr1 184237147 184237396 -97956268 + MIR SINE MIR 14 241 -21 494 262 35 7 chr1 184239930 184240071 -97953593 - MIR SINE MIR -50 212 68 322 345 34 23 chr1 184240575 184240752 -97952912 - MIR SINE MIR -79 183 5 219 333 51 58 chr1 184241781 184241810 -97951854 - L2 LINE L2 -4 3309 3281 2449 124 22 0 chr1 184241810 184242166 -97951498 - THE1B LTR MaLR 0 364 1 219 333 51 58 chr1 184242166 184242274 -97951390 - L2 LINE L2 -32 3281 3173 2666 248 106 27 chr1 184243164 184244064 -97949600 + L2 LINE L2 1694 2664 -650 1361 211 49 76 chr1 184244073 184244519 -97949145 + MLT1C LTR MaLR 34 467 0 740 244 90 109 chr1 184244519 184245022 -97948642 + L2 LINE L2 2615 3080 -233 1788 163 6 22 chr1 184245022 184245335 -97948329 - AluJb SINE Alu 0 312 5 740 244 90 109 chr1 184245335 184245565 -97948099 + L2 LINE L2 3080 3313 0 302 254 158 40 chr1 184245690 184245867 -97947797 + MIR SINE MIR 49 246 -16 2494 70 0 13 chr1 184247484 184247797 -97945867 + AluY SINE Alu 1 309 -2 3652 138 62 31 chr1 184248093 184248798 -97944866 - LTR8A LTR ERV1 0 727 1 228 287 54 16 chr1 184248824 184248953 -97944711 + L1MEc LINE L1 56 189 -6207 1427 304 30 21 chr1 184248963 184249365 -97944299 + L1MEc LINE L1 235 647 -5749 3831 146 14 35 chr1 184249365 184250079 -97943585 - LTR34 LTR ERV1 0 699 1 1427 304 30 21 chr1 184250079 184250379 -97943285 + L1MEc LINE L1 647 943 -5453 318 219 31 94 chr1 184250392 184250520 -97943144 - MER58B DNA MER1_type -1 340 221 1677 211 28 8 chr1 184250538 184250936 -97942728 + L1ME1 LINE L1 5720 6125 -41 2220 76 0 14 chr1 184251295 184251585 -97942079 + AluY SINE Alu 1 286 -25 1844 165 0 7 chr1 184253300 184253597 -97940067 - AluJo SINE Alu -17 295 1 243 93 139 0 chr1 184254064 184254107 -97939557 + LTR1 LTR ERV1 1 49 -736 3471 110 46 113 chr1 184254112 184254855 -97938809 + LTR1 LTR ERV1 1 693 -92 11599 204 55 29 chr1 184254961 184256976 -97936688 - L1M3 LINE L1 -373 6031 4070 1216 79 56 11 chr1 184256976 184257154 -97936510 - L1PA12 LINE L1 -15 6153 5968 11599 204 55 29 chr1 184257154 184259055 -97934609 - L1M3 LINE L1 -2334 4070 2018 1210 232 67 14 chr1 184259188 184259533 -97934131 + MLT1A1 LTR MaLR 1 363 -2 282 316 73 22 chr1 184259994 184260130 -97933534 - MIR SINE MIR -117 145 3 575 320 53 35 chr1 184261032 184261316 -97932348 + L2 LINE L2 1529 1817 -1497 246 32 0 0 chr1 184261644 184261675 -97931989 + (CA)n Simple_repeat Simple_repeat 2 32 0 400 315 30 24 chr1 184261707 184261750 -97931914 - L1M4 LINE L1 -1432 4714 4673 219 69 0 0 chr1 184261750 184261779 -97931885 + (TTA)n Simple_repeat Simple_repeat 2 30 0 400 315 30 24 chr1 184261779 184262065 -97931599 - L1M4 LINE L1 -1473 4673 4383 3170 148 111 25 chr1 184262097 184262746 -97930918 + MER39 LTR ERV1 1 705 -2 3973 192 54 21 chr1 184262787 184263751 -97929913 - L1MC3 LINE L1 0 7785 6790 3572 260 85 31 chr1 184263765 184265727 -97927937 - L1MC3 LINE L1 -1481 6304 3076 358 239 54 0 chr1 184265957 184266049 -97927615 - MER21B LTR ERV1 -109 754 658 1459 246 132 92 chr1 184266057 184266729 -97926935 - MER21B LTR ERV1 -152 711 13 327 312 0 56 chr1 184266976 184267020 -97926644 + L1ME LINE L1 270 315 -5755 3177 145 15 17 chr1 184267020 184267552 -97926112 - LTR26B LTR ERV1 0 531 1 327 312 0 56 chr1 184267552 184267632 -97926032 + L1ME LINE L1 315 387 -5683 330 158 132 11 chr1 184267693 184267816 -97925848 + FRAM SINE Alu 1 106 -60 21 0 0 0 chr1 184267985 184268006 -97925658 + AT_rich Low_complexity Low_complexity 1 21 0 810 221 101 39 chr1 184268403 184268661 -97925003 - LTR48 LTR ERV1 0 787 514 * 812 178 108 54 chr1 184268629 184268870 -97924794 - LTR48 LTR ERV1 -533 254 1 1253 234 128 41 chr1 184269031 184269569 -97924095 - MER34C LTR ERV1 0 585 1 1880 144 37 40 chr1 184270045 184270421 -97923243 - THE1C LTR MaLR 0 375 1 6948 231 44 18 chr1 184270873 184273378 -97920286 - L1PA12 LINE L1 -3678 3906 1394 742 100 0 0 chr1 184273481 184273581 -97920083 - AluS SINE Alu -211 102 3 324 306 62 4 chr1 184273582 184273710 -97919954 - L1 LINE L1 -1328 4818 4688 347 326 0 0 chr1 184274171 184274266 -97919398 + MER5A DNA MER1_type 94 188 -1 453 255 73 12 chr1 184274275 184274449 -97919215 + MER20 DNA MER1_type 1 219 0 199 333 18 89 chr1 184274725 184274893 -97918771 - MIR SINE MIR -10 252 97 2367 92 50 34 chr1 184274961 184275319 -97918345 - THE1B LTR MaLR 0 364 1 252 254 28 0 chr1 184275413 184275484 -97918180 - MIR SINE MIR -64 144 72 3063 221 37 48 chr1 184276393 184276896 -97916768 - L1MB8 LINE L1 -16 6162 5671 4433 56 0 12 chr1 184276896 184277464 -97916200 + L1PA8 LINE L1 5612 6172 0 3063 221 37 48 chr1 184277464 184277924 -97915740 - L1MB8 LINE L1 -507 5671 5208 287 238 24 0 chr1 184278315 184278399 -97915265 + L1 LINE L1 2816 2901 -3245 2087 121 24 40 chr1 184278549 184278929 -97914735 + THE1C LTR MaLR 2 375 0 9439 118 44 39 chr1 184278929 184280500 -97913164 + THE1C-int LTR MaLR 1 1579 -1 1837 146 49 32 chr1 184280501 184280870 -97912794 + THE1C LTR MaLR 1 375 0 321 247 82 25 chr1 184281173 184281331 -97912333 - L1M4c LINE L1 -4201 2183 2017 4897 171 20 46 chr1 184281381 184282647 -97911017 - L1MA3 LINE L1 -1 6304 5070 2584 171 51 2 chr1 184282645 184283159 -97910505 + L1MA3 LINE L1 4530 5068 -1078 * 432 358 21 5 chr1 184283854 184284047 -97909617 - MIR SINE MIR -10 252 57 2606 220 65 5 chr1 184284148 184284748 -97908916 - L1MC3 LINE L1 -997 6788 6153 3511 189 49 5 chr1 184284867 184285623 -97908041 + L1MC3 LINE L1 6990 7778 -7 400 296 101 6 chr1 184286181 184286340 -97907324 - MIR SINE MIR -40 222 49 1167 317 85 51 chr1 184286761 184287529 -97906135 + L2 LINE L2 2266 3054 -259 365 176 0 14 chr1 184287932 184288006 -97905658 + L1MA4 LINE L1 5379 5451 -849 299 0 0 0 chr1 184288006 184288039 -97905625 + U2 snRNA snRNA 1 33 -155 4949 143 11 7 chr1 184288039 184288391 -97905273 + L1MA4 LINE L1 5438 5787 -513 225 0 0 0 chr1 184288391 184288416 -97905248 + (CA)n Simple_repeat Simple_repeat 2 26 0 4949 143 11 7 chr1 184288416 184288911 -97904753 + L1MA4 LINE L1 5787 6288 -12 1475 179 72 4 chr1 184289051 184289350 -97904314 - AluJb SINE Alu 0 318 2 512 135 135 0 chr1 184290330 184290419 -97903245 - L1P4 LINE L1 -551 5612 5512 2151 83 10 0 chr1 184290421 184290721 -97902943 + L1PA13 LINE L1 5861 6163 0 192 40 0 0 chr1 184291401 184291426 -97902238 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2189 192 60 24 chr1 184291506 184291969 -97901695 + MLT2B1 LTR ERVL 1 480 -40 261 193 7 57 chr1 184291987 184292127 -97901537 + (TA)n Simple_repeat Simple_repeat 1 133 0 490 297 55 7 chr1 184292230 184292503 -97901161 + L1ME LINE L1 4046 4331 -1815 1113 250 73 31 chr1 184292605 184293342 -97900322 + L1ME LINE L1 4942 5703 -467 3194 229 30 66 chr1 184293569 184294939 -97898725 + L1M1 LINE L1 17 1286 -6279 1125 225 9 102 chr1 184295827 184296160 -97897504 - AluJb SINE Alu 0 302 1 209 180 20 0 chr1 184296503 184296553 -97897111 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1315 159 19 56 chr1 184297607 184298422 -97895242 - L1MB4 LINE L1 -82 6098 5199 30 0 0 0 chr1 184299806 184299836 -97893828 + AT_rich Low_complexity Low_complexity 1 30 0 306 295 134 7 chr1 184299907 184300056 -97893608 + L1MEd LINE L1 832 999 -5120 188 286 169 13 chr1 184300249 184300326 -97893338 - MIR3 SINE MIR -118 90 2 268 326 35 12 chr1 184300631 184300717 -97892947 - MIR3 SINE MIR -27 181 94 2257 171 37 33 chr1 184300906 184301361 -97892303 + MSTB2 LTR MaLR 1 457 0 22 35 0 0 chr1 184301731 184301760 -97891904 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 184301944 184301968 -97891696 + AT_rich Low_complexity Low_complexity 1 24 0 313 361 19 6 chr1 184302026 184302184 -97891480 - L2 LINE L2 -1264 2050 1891 611 258 32 77 chr1 184302327 184302548 -97891116 + MLT1I LTR MaLR 199 409 0 2122 118 0 0 chr1 184302886 184303188 -97890476 - AluSc SINE Alu 0 302 1 764 312 79 34 chr1 184303485 184304241 -97889423 + L1MEd LINE L1 461 1250 -4869 282 116 0 0 chr1 184304253 184304296 -97889368 + (GGGAA)n Simple_repeat Simple_repeat 2 44 0 684 293 73 14 chr1 184304482 184304769 -97888895 - L2 LINE L2 -2 3311 3008 754 214 6 0 chr1 184304959 184305137 -97888527 - L1 LINE L1 -812 5334 5156 287 282 102 14 chr1 184305500 184305716 -97887948 + L1MEd LINE L1 2115 2349 -3780 3816 99 30 17 chr1 184305781 184306374 -97887290 - L1PB2 LINE L1 -3 6148 5548 1392 130 5 14 chr1 184306383 184306598 -97887066 + THE1-int LTR MaLR 1188 1400 -180 1740 137 37 10 chr1 184306607 184307007 -97886657 - L1PB2 LINE L1 -584 5567 5160 215 197 0 61 chr1 184307722 184307788 -97885876 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 399 240 220 0 chr1 184307859 184308009 -97885655 - MIR SINE MIR 0 262 80 282 340 24 26 chr1 184308164 184308296 -97885368 - MIR SINE MIR -73 135 7 551 307 22 17 chr1 184308806 184308985 -97884679 + MIR3 SINE MIR 20 199 -9 407 299 109 0 chr1 184310374 184310511 -97883153 + L2 LINE L2 3162 3313 0 920 333 86 41 chr1 184310727 184311448 -97882216 - L2 LINE L2 -9 3263 2492 748 225 11 47 chr1 184311750 184311941 -97881723 - MER5A DNA MER1_type -3 186 3 368 374 21 11 chr1 184312463 184312650 -97881014 - MER5A DNA MER1_type 0 189 1 294 336 41 27 chr1 184312650 184312796 -97880868 - MIR3 SINE MIR -37 171 24 181 337 36 0 chr1 184312895 184312978 -97880686 + MIR SINE MIR 177 262 0 660 210 13 32 chr1 184312983 184313140 -97880524 - MER104 DNA Tc2 -4 176 23 389 222 148 19 chr1 184313205 184313313 -97880351 - L2 LINE L2 -363 2951 2830 262 91 136 0 chr1 184313328 184313372 -97880292 - L1P4 LINE L1 -428 5738 5689 396 102 19 15 chr1 184313375 184313457 -97880207 - L1PA10 LINE L1 -334 5834 5753 222 206 0 0 chr1 184313458 184313526 -97880138 + T-rich Low_complexity Low_complexity 1 68 0 7157 15 0 0 chr1 184313533 184314349 -97879315 - L1PA2 LINE L1 -3 6152 5337 11504 24 4 4 chr1 184314349 184316488 -97877176 + L1PA5 LINE L1 4010 6154 0 297 197 0 30 chr1 184316537 184316603 -97877061 - MIR3 SINE MIR -24 184 121 504 227 166 65 chr1 184318204 184318433 -97875231 + MIR SINE MIR 11 262 0 252 0 0 0 chr1 184319299 184319327 -97874337 + (TG)n Simple_repeat Simple_repeat 1 28 0 1396 296 146 24 chr1 184319749 184320636 -97873028 - L2 LINE L2 0 3313 2312 289 313 73 20 chr1 184320844 184320994 -97872670 - MIR SINE MIR -21 241 84 7180 206 19 16 chr1 184321202 184322633 -97871031 - L1M1 LINE L1 -6005 1560 126 356 338 60 13 chr1 184322653 184322804 -97870860 + L3 LINE CR1 1409 1566 -11 463 170 70 0 chr1 184322811 184322911 -97870753 - L1M1 LINE L1 -7434 131 25 372 335 58 31 chr1 184322914 184323105 -97870559 - MIR SINE MIR -65 197 2 2217 61 46 0 chr1 184323135 184323415 -97870249 + AluY SINE Alu 3 295 -16 2364 89 3 0 chr1 184323426 184323729 -97869935 + AluSg SINE Alu 1 304 -6 566 318 37 37 chr1 184325176 184325500 -97868164 + L2 LINE L2 2142 2465 -849 5988 141 18 20 chr1 184325513 184327366 -97866298 - L1MA2 LINE L1 0 7723 5876 8316 161 18 9 chr1 184327425 184330010 -97863654 - L1MA2 LINE L1 -2716 4849 2246 3122 196 23 25 chr1 184330459 184331208 -97862456 - L1 LINE L1 -2195 5370 4624 * 5374 208 12 5 chr1 184331204 184332410 -97861254 + L1 LINE L1 3951 5164 -982 3757 84 59 11 chr1 184332510 184333067 -97860597 - L1PA8A LINE L1 -28 6103 5520 697 221 66 101 chr1 184333164 184333572 -97860092 - L1MC4a LINE L1 -1741 6067 5674 557 306 153 9 chr1 184334381 184334603 -97859061 + MIR SINE MIR 8 261 -1 248 350 0 0 chr1 184334667 184334747 -97858917 + L2 LINE L2 3234 3313 0 201 196 0 0 chr1 184334989 184335035 -97858629 + (CATATA)n Simple_repeat Simple_repeat 4 49 0 1351 298 78 8 chr1 184335421 184335935 -97857729 + L2 LINE L2 2293 2842 -472 313 258 129 18 chr1 184335935 184336098 -97857566 - HAL1 LINE L1 -83 2424 2244 422 303 96 76 chr1 184336099 184336505 -97857159 + L2 LINE L2 2898 3311 -2 22 0 0 0 chr1 184336792 184336814 -97856850 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 184336869 184336890 -97856774 + AT_rich Low_complexity Low_complexity 1 21 0 852 283 59 40 chr1 184337450 184337732 -97855932 - HAL1 LINE L1 -5 2502 2208 425 19 19 0 chr1 184337732 184337786 -97855878 + (CA)n Simple_repeat Simple_repeat 2 56 0 852 283 59 40 chr1 184337786 184337924 -97855740 - HAL1 LINE L1 -299 2208 2074 18102 30 1 2 chr1 184338176 184340938 -97852726 - L1PA2 LINE L1 -202 5953 3195 796 277 15 59 chr1 184341115 184341386 -97852278 - MIR SINE MIR -2 260 2 1443 289 87 62 chr1 184341435 184342364 -97851300 - HAL1 LINE L1 -1554 953 2 2328 93 3 3 chr1 184342908 184343210 -97850454 - AluSq SINE Alu -11 302 1 204 323 160 38 chr1 184344158 184344502 -97849162 + L2 LINE L2 2583 2968 -346 631 331 180 24 chr1 184344841 184345375 -97848289 + L3 LINE CR1 915 1531 -46 24 53 0 0 chr1 184345914 184345952 -97847712 + AT_rich Low_complexity Low_complexity 1 38 0 211 135 27 0 chr1 184346557 184346594 -97847070 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 376 268 41 41 chr1 184346625 184346748 -97846916 - MLT1I LTR MaLR -81 328 206 6638 159 18 4 chr1 184346944 184348663 -97845001 - L1PA15 LINE L1 -323 5842 4106 670 294 51 15 chr1 184348822 184349019 -97844645 - MIR SINE MIR -26 236 33 570 312 68 36 chr1 184349623 184349873 -97843791 + MIR SINE MIR 3 260 -2 731 200 7 14 chr1 184351201 184351346 -97842318 + MER5B DNA MER1_type 1 144 -34 868 224 19 0 chr1 184351359 184351520 -97842144 - MER5A DNA MER1_type -25 164 1 183 261 0 43 chr1 184352812 184352881 -97840783 - MIR SINE MIR -7 255 190 1745 121 36 36 chr1 184354026 184354327 -97839337 - AluSq SINE Alu 0 303 3 252 211 19 0 chr1 184354710 184354762 -97838902 - MER45A DNA AcHobo 0 178 126 1280 280 73 30 chr1 184354882 184355346 -97838318 - MER45C DNA AcHobo -469 484 1 814 245 73 8 chr1 184355903 184356148 -97837516 - MIR SINE MIR 0 262 2 261 250 15 0 chr1 184356372 184356440 -97837224 + MIR SINE MIR 63 131 -131 441 230 43 36 chr1 184357463 184357550 -97836114 - MIR SINE MIR -26 236 146 2167 104 3 31 chr1 184357550 184357867 -97835797 - AluSc SINE Alu -1 308 1 441 230 43 36 chr1 184357867 184357918 -97835746 - MIR SINE MIR -116 146 97 1609 234 60 63 chr1 184358339 184358830 -97834834 - LTR9 LTR ERV1 0 612 122 2299 103 0 28 chr1 184358830 184359149 -97834515 - AluSq SINE Alu -3 310 1 1609 234 60 63 chr1 184359149 184359271 -97834393 - LTR9 LTR ERV1 -490 122 1 420 337 51 31 chr1 184359732 184359928 -97833736 - MIR3 SINE MIR -6 202 1 680 256 70 35 chr1 184360826 184361056 -97832608 + MIR SINE MIR 25 262 0 21 0 0 0 chr1 184362088 184362109 -97831555 + AT_rich Low_complexity Low_complexity 1 21 0 234 228 98 11 chr1 184362173 184362265 -97831399 + L1ME4a LINE L1 5982 6081 -40 354 299 121 39 chr1 184362421 184362652 -97831012 + L1M4 LINE L1 4981 5230 -916 225 0 0 0 chr1 184362688 184362713 -97830951 + (A)n Simple_repeat Simple_repeat 1 25 0 806 66 0 0 chr1 184362726 184362832 -97830832 - L1PB1 LINE L1 -1 6150 6045 2231 119 0 10 chr1 184362920 184363232 -97830432 + AluSg SINE Alu 1 309 -1 3337 324 73 64 chr1 184363656 184365479 -97828185 + HERV16 LTR ERVL 424 2283 -2713 1889 176 0 0 chr1 184365479 184365791 -97827873 + AluSx SINE Alu 1 312 0 3337 324 73 64 chr1 184365791 184366609 -97827055 + HERV16 LTR ERVL 2283 3091 -1905 455 297 84 28 chr1 184366884 184367229 -97826435 + L1MC4a LINE L1 5188 5542 -751 344 276 142 7 chr1 184367242 184367517 -97826147 + L1MC4a LINE L1 5574 5885 -1923 789 244 0 0 chr1 184368302 184368470 -97825194 - MER45A DNA AcHobo -1 177 10 340 296 67 22 chr1 184368614 184368910 -97824754 - LTR33 LTR ERVL 0 521 174 183 250 0 0 chr1 184370059 184370099 -97823565 + MIR SINE MIR 69 108 -100 523 289 85 5 chr1 184370378 184370579 -97823085 + MIR SINE MIR 6 222 -40 949 214 184 10 chr1 184370834 184371138 -97822526 + MLT2C1 LTR ERVL 1 357 -40 1734 153 30 54 chr1 184371279 184371651 -97822013 - MLT1A1 LTR MaLR 0 365 3 21 36 0 0 chr1 184371914 184371942 -97821722 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 184371979 184372001 -97821663 + AT_rich Low_complexity Low_complexity 1 22 0 2423 130 16 3 chr1 184372001 184372371 -97821293 - THE1C LTR MaLR 0 375 1 183 359 75 9 chr1 184372460 184372566 -97821098 + MIR3 SINE MIR 13 125 -83 2316 97 0 3 chr1 184373123 184373421 -97820243 + AluSq SINE Alu 1 297 -16 1788 144 11 7 chr1 184373970 184374255 -97819409 - AluSx SINE Alu -26 286 1 275 353 94 16 chr1 184374338 184374593 -97819071 + L2 LINE L2 2159 2433 -881 21 36 0 0 chr1 184376065 184376093 -97817571 + AT_rich Low_complexity Low_complexity 1 28 0 713 261 26 17 chr1 184376685 184376919 -97816745 + L1MCc LINE L1 14 249 -6174 454 233 103 0 chr1 184376921 184377037 -97816627 + L1MCc LINE L1 293 420 -6003 1842 261 55 42 chr1 184377140 184377943 -97815721 + L1ME3A LINE L1 5350 6162 -8 690 271 99 0 chr1 184378030 184378211 -97815453 - MIR SINE MIR -24 238 40 2213 131 0 0 chr1 184378291 184378589 -97815075 - AluSx SINE Alu -14 298 1 185 215 154 31 chr1 184378755 184378820 -97814844 + MIR3 SINE MIR 130 202 -6 207 69 0 0 chr1 184378873 184378902 -97814762 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 224 315 0 0 chr1 184378905 184378959 -97814705 - L2 LINE L2 -14 3299 3246 885 310 16 30 chr1 184378959 184379058 -97814606 - L2 LINE L2 -243 3070 2971 608 48 12 0 chr1 184379058 184379142 -97814522 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 885 310 16 30 chr1 184379142 184379477 -97814187 - L2 LINE L2 -342 2971 2645 1485 181 146 31 chr1 184379700 184380119 -97813545 - MLT1C LTR MaLR 0 467 1 540 245 46 7 chr1 184380265 184380416 -97813248 - MIR SINE MIR -18 244 88 580 88 0 0 chr1 184380523 184380603 -97813061 - MADE1 DNA Mariner 0 80 1 25 31 0 0 chr1 184382148 184382180 -97811484 + AT_rich Low_complexity Low_complexity 1 32 0 290 300 29 4 chr1 184382635 184382827 -97810837 - MIR SINE MIR 0 262 3 536 319 88 14 chr1 184383784 184384000 -97809664 + MIR SINE MIR 2 233 -29 333 324 113 10 chr1 184384414 184384618 -97809046 + MIR SINE MIR 17 241 -21 286 346 0 20 chr1 184384753 184384854 -97808810 + MIR SINE MIR 42 140 -122 338 0 22 0 chr1 184385439 184385484 -97808180 - MADE1 DNA Mariner -34 46 1 322 323 92 43 chr1 184385827 184385991 -97807673 + MIR3 SINE MIR 12 183 -25 431 233 313 11 chr1 184386850 184387026 -97806638 + MIR SINE MIR 8 236 -26 3012 16 0 0 chr1 184387114 184387480 -97806184 - L1PA3 LINE L1 -996 5150 4785 7439 27 15 0 chr1 184387480 184388492 -97805172 + L1PA3 LINE L1 5130 6154 -1 2100 164 14 14 chr1 184391132 184391497 -97802167 - MLT1A1 LTR MaLR 0 365 1 435 171 34 0 chr1 184393270 184393358 -97800306 + MLT1C LTR MaLR 1 91 -376 1474 199 60 14 chr1 184393548 184393914 -97799750 + MLT1C LTR MaLR 82 464 -3 412 300 46 31 chr1 184394664 184394794 -97798870 - L2 LINE L2 -5 3267 3136 32 0 0 0 chr1 184395389 184395421 -97798243 + AT_rich Low_complexity Low_complexity 1 32 0 687 239 44 10 chr1 184395490 184395589 -97798075 + MLT1J LTR MaLR 1 95 -416 207 0 0 0 chr1 184395589 184395612 -97798052 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 687 239 44 10 chr1 184395612 184395717 -97797947 + MLT1J LTR MaLR 95 212 -299 339 273 55 61 chr1 184395768 184395933 -97797731 - L1MDa LINE L1 -3525 3015 2852 304 194 119 15 chr1 184396055 184396189 -97797475 - L1MDa LINE L1 -3936 2604 2457 5686 137 10 10 chr1 184396291 184397826 -97795838 - L1PB1 LINE L1 -3 6864 5329 4917 180 33 5 chr1 184397827 184398960 -97794704 - L1PB1 LINE L1 -4463 2400 1093 2633 229 90 11 chr1 184398963 184399859 -97793805 - L1PB1 LINE L1 -5817 1046 80 357 279 99 29 chr1 184400025 184400197 -97793467 - L1MDa LINE L1 -4576 2145 1962 3153 245 84 18 chr1 184400226 184401849 -97791815 - L1ME1 LINE L1 -5 6230 4417 1765 114 114 11 chr1 184401849 184402121 -97791543 - AluSg SINE Alu -10 300 1 3153 245 84 18 chr1 184402121 184402692 -97790972 - L1ME1 LINE L1 -1818 4417 3885 282 221 15 0 chr1 184402698 184402766 -97790898 + MSTB1 LTR MaLR 359 427 -5 2842 254 36 30 chr1 184402773 184404240 -97789424 - L1ME1 LINE L1 -3372 2843 1318 2320 84 14 0 chr1 184404274 184404561 -97789103 - AluSg SINE Alu -19 291 1 871 243 61 29 chr1 184404578 184404898 -97788766 - L1ME1 LINE L1 -6036 360 29 306 306 210 11 chr1 184404886 184405072 -97788592 - MIR SINE MIR -8 254 32 * 2220 105 0 3 chr1 184407443 184407737 -97785927 + AluSg SINE Alu 1 293 -17 290 303 79 0 chr1 184408061 184408137 -97785527 + L2 LINE L2 3160 3241 -31 230 196 0 20 chr1 184409217 184409268 -97784396 - L2 LINE L2 -8 3305 3256 275 270 191 9 chr1 184409327 184409442 -97784222 + MIR SINE MIR 115 250 -12 22 56 0 0 chr1 184409551 184409587 -97784077 + AT_rich Low_complexity Low_complexity 1 36 0 194 227 45 114 chr1 184409893 184409981 -97783683 - MIR3 SINE MIR -14 194 113 322 292 109 36 chr1 184410033 184410170 -97783494 + MIR3 SINE MIR 1 147 -61 207 375 75 0 chr1 184410320 184410400 -97783264 - MER5A DNA MER1_type -84 105 20 274 346 33 109 chr1 184410449 184410752 -97782912 - L2 LINE L2 -64 3208 2929 199 156 0 0 chr1 184411193 184411225 -97782439 + L2 LINE L2 3258 3289 -24 2130 169 12 68 chr1 184412110 184412523 -97781141 - MLT1B LTR MaLR 0 390 1 22 88 0 0 chr1 184414732 184414789 -97778875 + AT_rich Low_complexity Low_complexity 1 57 0 293 229 205 6 chr1 184414956 184415087 -97778577 - MIR SINE MIR -62 146 2 932 223 62 33 chr1 184415986 184416197 -97777467 + MER20 DNA MER1_type 1 217 -2 255 263 88 43 chr1 184416212 184416377 -97777287 - MIR SINE MIR -65 143 22 234 0 0 0 chr1 184416537 184416563 -97777101 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr1 184416985 184417010 -97776654 + (A)n Simple_repeat Simple_repeat 1 25 0 2464 35 42 0 chr1 184417460 184417746 -97775918 + AluY SINE Alu 1 298 -13 22 0 0 0 chr1 184418140 184418162 -97775502 + AT_rich Low_complexity Low_complexity 1 22 0 2978 84 2 138 chr1 184418896 184419410 -97774254 + MLT2A1 LTR ERVL 1 444 0 520 200 55 7 chr1 184420400 184420545 -97773119 + MER103 DNA DNA 13 164 -2 304 293 33 73 chr1 184420930 184421080 -97772584 - MIR SINE MIR -117 145 2 535 240 58 83 chr1 184421298 184421540 -97772124 + MLT1L LTR MaLR 159 394 -221 327 223 11 53 chr1 184421638 184421714 -97771950 + MER94 DNA DNA 2 75 -59 1912 121 44 7 chr1 184421714 184422012 -97771652 + AluSx SINE Alu 1 309 -3 327 223 11 53 chr1 184422012 184422029 -97771635 + MER94 DNA DNA 75 91 -43 228 200 18 36 chr1 184422979 184423034 -97770630 - L2 LINE L2 -2 3311 3258 324 0 0 0 chr1 184423154 184423190 -97770474 + (CA)n Simple_repeat Simple_repeat 2 37 0 262 244 138 119 chr1 184423560 184424023 -97769641 - L2 LINE L2 -5 3308 2837 907 162 23 17 chr1 184424829 184425002 -97768662 - MER104 DNA Tc2 -3 177 4 2672 158 0 7 chr1 184425327 184425698 -97767966 - L1PB1 LINE L1 -3 6148 5779 373 49 12 49 chr1 184425698 184425779 -97767885 + (TA)n Simple_repeat Simple_repeat 1 78 0 2672 158 0 7 chr1 184425779 184425837 -97767827 - L1PB1 LINE L1 -372 5779 5722 3364 93 1 24 chr1 184425837 184426060 -97767604 + L1P5 LINE L1 5147 5374 -777 2635 56 0 0 chr1 184426060 184426364 -97767300 + AluY SINE Alu 1 304 -7 3364 93 1 24 chr1 184426364 184426716 -97766948 + L1P5 LINE L1 5374 5714 -437 188 271 34 59 chr1 184427059 184427177 -97766487 - L2 LINE L2 -5 3308 3194 264 208 104 39 chr1 184427291 184427368 -97766296 + MER117 DNA MER1_type 7 88 -109 24 32 0 0 chr1 184427511 184427542 -97766122 + AT_rich Low_complexity Low_complexity 1 31 0 301 298 50 14 chr1 184427545 184427686 -97765978 - L1ME4a LINE L1 -13 6108 5963 327 231 8 77 chr1 184427812 184427929 -97765735 - MER103 DNA DNA -3 163 55 898 113 12 0 chr1 184427945 184428105 -97765559 + (TTCC)n Simple_repeat Simple_repeat 3 164 0 2467 54 0 7 chr1 184428105 184428399 -97765265 - AluY SINE Alu -19 292 1 622 197 28 17 chr1 184428399 184428629 -97765035 + CT-rich Low_complexity Low_complexity 1 232 0 2495 192 70 82 chr1 184429164 184429863 -97763801 - LTR8 LTR ERV1 0 691 1 36 108 0 0 chr1 184430478 184430626 -97763038 + AT_rich Low_complexity Low_complexity 1 148 0 25 31 0 0 chr1 184430877 184430909 -97762755 + AT_rich Low_complexity Low_complexity 1 32 0 2011 120 3 57 chr1 184431728 184432044 -97761620 + AluSq SINE Alu 1 299 -14 2234 201 62 2 chr1 184433440 184433872 -97759792 + LTR32 LTR ERVL 14 471 0 432 256 60 15 chr1 184434139 184434272 -97759392 + Charlie1 DNA MER1_type 53 191 -2570 1661 108 22 110 chr1 184434594 184434964 -97758700 - MER4A LTR ERV1 0 664 269 525 112 101 0 chr1 184434973 184435062 -97758602 - MER4A LTR ERV1 -566 98 1 322 271 158 30 chr1 184435132 184435265 -97758399 + MIR SINE MIR 84 233 -29 185 273 0 0 chr1 184435933 184435977 -97757687 - L2 LINE L2 -19 3253 3210 1156 286 78 24 chr1 184436042 184436356 -97757308 + MLT1J1 LTR MaLR 1 345 -101 4468 89 2 0 chr1 184436356 184436909 -97756755 - MER41A LTR ERV1 0 554 1 1156 286 78 24 chr1 184436909 184437017 -97756647 + MLT1J1 LTR MaLR 345 446 0 665 295 25 25 chr1 184437323 184437523 -97756141 - MIR SINE MIR -58 204 5 2208 102 7 13 chr1 184438386 184438691 -97754973 + AluSx SINE Alu 1 303 -9 688 139 28 28 chr1 184438691 184438871 -97754793 + GA-rich Low_complexity Low_complexity 1 180 0 688 299 23 9 chr1 184440190 184440407 -97753257 + MLT1J LTR MaLR 1 220 -291 990 226 25 15 chr1 184441239 184441443 -97752221 - MER20 DNA MER1_type -3 216 11 501 275 9 0 chr1 184441977 184442086 -97751578 + L2 LINE L2 3204 3313 0 278 301 26 80 chr1 184442125 184442238 -97751426 - MIR SINE MIR -110 152 46 935 107 0 0 chr1 184442341 184442591 -97751073 + AluY SINE Alu 160 409 0 711 272 37 86 chr1 184443383 184443788 -97749876 + L2 LINE L2 2291 2675 -639 30 27 0 0 chr1 184445529 184445566 -97748098 + AT_rich Low_complexity Low_complexity 1 37 0 227 346 62 17 chr1 184446657 184446836 -97746828 - L2 LINE L2 -459 2855 2669 370 282 24 13 chr1 184447003 184447142 -97746522 - MIR SINE MIR -62 146 31 517 296 72 58 chr1 184447310 184447655 -97746009 + L2 LINE L2 2911 3260 -12 227 216 86 95 chr1 184448258 184448374 -97745290 + MIR3 SINE MIR 48 162 -46 1229 230 34 65 chr1 184449239 184449622 -97744042 - MLT1D LTR MaLR -114 391 21 472 248 33 41 chr1 184449838 184449959 -97743705 + HERVL LTR ERVL 4204 4323 -1331 199 214 71 0 chr1 184450136 184450178 -97743486 + MIR SINE MIR 63 107 -155 306 290 40 10 chr1 184450257 184450357 -97743307 - MIR SINE MIR -112 150 48 253 263 74 21 chr1 184450402 184450497 -97743167 + MIR SINE MIR 113 212 -50 657 294 81 28 chr1 184450520 184450768 -97742896 - MIR SINE MIR 0 262 2 22 0 0 0 chr1 184450787 184450809 -97742855 + AT_rich Low_complexity Low_complexity 1 22 0 2662 180 29 2 chr1 184450814 184451269 -97742395 - MLT1C LTR MaLR 0 467 1 307 211 64 64 chr1 184452239 184452348 -97741316 - MIR3 SINE MIR -92 116 8 392 305 35 66 chr1 184454113 184454310 -97739354 - L2 LINE L2 -4 3309 3119 292 216 88 198 chr1 184454320 184454381 -97739283 - MIR SINE MIR -10 252 186 1690 168 143 19 chr1 184454381 184454702 -97738962 + MLT1A1 LTR MaLR 3 363 -2 292 216 88 198 chr1 184454702 184454923 -97738741 - MIR SINE MIR -76 186 1 1389 159 124 10 chr1 184455200 184455490 -97738174 - MER33 DNA MER1_type -1 323 1 355 290 142 12 chr1 184455702 184455871 -97737793 + MIR SINE MIR 69 259 -3 403 241 0 0 chr1 184455941 184456024 -97737640 - L2 LINE L2 -7 3306 3224 369 230 96 57 chr1 184456725 184456787 -97736877 - L1M4 LINE L1 -3539 3105 3047 2428 86 0 0 chr1 184456787 184457091 -97736573 + AluY SINE Alu 1 304 -7 369 230 96 57 chr1 184457091 184457237 -97736427 - L1M4 LINE L1 -3597 3047 2889 2438 247 30 76 chr1 184457237 184458027 -97735637 + MER21B LTR ERV1 1 754 -109 7057 219 69 59 chr1 184458067 184458835 -97734829 - L1M4 LINE L1 -3762 2882 2123 2146 108 0 0 chr1 184458835 184459114 -97734550 + AluSg SINE Alu 1 279 -31 342 0 0 0 chr1 184459121 184459159 -97734505 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 7057 219 69 59 chr1 184459159 184459852 -97733812 - L1M4 LINE L1 -4526 2118 1433 1957 147 7 16 chr1 184459852 184460159 -97733505 - AluSx SINE Alu -8 304 1 7057 219 69 59 chr1 184460159 184461546 -97732118 - L1M4 LINE L1 -5211 1433 8 773 301 64 14 chr1 184461552 184461848 -97731816 + MLT1J LTR MaLR 201 511 0 223 386 7 46 chr1 184461860 184462013 -97731651 - MIR SINE MIR -95 167 21 246 77 0 0 chr1 184462526 184462565 -97731099 - L1PA15 LINE L1 -3 6162 6124 264 108 0 0 chr1 184462567 184462604 -97731060 + L1PA15 LINE L1 6117 6153 -12 3018 128 2 2 chr1 184462637 184463081 -97730583 - L1PA15 LINE L1 -48 6117 5674 10701 235 34 37 chr1 184463085 184465393 -97728271 - L1PA12 LINE L1 -3892 3692 1390 880 241 85 121 chr1 184465393 184466085 -97727579 - PABL_B LTR ERV1 0 667 1 10701 235 34 37 chr1 184466085 184467471 -97726193 - L1PA12 LINE L1 -6194 1390 1 196 314 0 0 chr1 184467624 184467675 -97725989 + MIR SINE MIR 25 75 -187 216 178 44 0 chr1 184468155 184468200 -97725464 + MIR3 SINE MIR 151 197 -11 372 279 66 15 chr1 184469314 184469450 -97724214 - MIR SINE MIR -65 197 55 396 0 0 0 chr1 184470815 184470859 -97722805 + (TG)n Simple_repeat Simple_repeat 2 45 0 230 196 0 22 chr1 184471549 184471596 -97722068 + (TATG)n Simple_repeat Simple_repeat 1 45 0 383 282 7 40 chr1 184471662 184471811 -97721853 - MIR SINE MIR 0 262 119 265 214 0 18 chr1 184473082 184473138 -97720526 + L2 LINE L2 3221 3275 -38 690 199 103 13 chr1 184473553 184473709 -97719955 - MER45A DNA AcHobo 0 178 9 234 250 103 15 chr1 184474308 184474376 -97719288 + MIR3 SINE MIR 108 181 -27 980 262 133 6 chr1 184474735 184475052 -97718612 + LTR18A LTR ERVL 1 357 0 1057 128 16 64 chr1 184475333 184475521 -97718143 - MLT2B3 LTR ERVL -334 220 42 1911 197 73 11 chr1 184475521 184475892 -97717772 - MLT1E LTR MaLR 0 593 200 434 342 0 0 chr1 184475929 184476043 -97717621 - MLT1E LTR MaLR -479 114 1 2355 49 0 23 chr1 184477597 184477902 -97715762 - AluY SINE Alu -13 298 1 423 0 0 0 chr1 184477928 184477975 -97715689 + (CA)n Simple_repeat Simple_repeat 1 47 0 258 342 42 17 chr1 184478065 184478185 -97715479 - L2 LINE L2 0 3272 3150 2186 121 0 3 chr1 184478691 184478997 -97714667 - AluSx SINE Alu -7 305 1 269 252 76 53 chr1 184479038 184479169 -97714495 - MIR SINE MIR -6 256 123 320 286 135 23 chr1 184480371 184480504 -97713160 + MIR3 SINE MIR 25 172 -36 21 71 0 0 chr1 184481443 184481485 -97712179 + AT_rich Low_complexity Low_complexity 1 42 0 1004 153 45 28 chr1 184481927 184482104 -97711560 + MER5A DNA MER1_type 1 180 -9 200 396 88 0 chr1 184482199 184482290 -97711374 + MIR SINE MIR 34 132 -76 772 237 151 64 chr1 184483009 184483447 -97710217 + MLT1H1 LTR MaLR 80 555 0 292 347 10 10 chr1 184484282 184484380 -97709284 + MIR SINE MIR 44 141 -67 574 287 147 0 chr1 184484395 184484552 -97709112 - MER5A DNA MER1_type -1 188 9 2036 123 0 35 chr1 184489811 184490127 -97703537 + AluSx SINE Alu 1 305 -7 414 260 227 0 chr1 184490649 184490803 -97702861 + MER5A DNA MER1_type 1 189 0 363 325 30 122 chr1 184491926 184492255 -97701409 - L2 LINE L2 -28 3244 2946 201 39 0 0 chr1 184493294 184493320 -97700344 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2664 83 13 32 chr1 184493339 184493713 -97699951 + L1PA13 LINE L1 5795 6161 -2 336 197 0 0 chr1 184493747 184493813 -97699851 + MER5B DNA MER1_type 1 66 -112 899 239 15 5 chr1 184493833 184494038 -97699626 + L1ME3A LINE L1 5546 5752 -418 1523 204 59 6 chr1 184494041 184494398 -97699266 + L1ME3A LINE L1 5795 6170 0 * 6162 188 30 20 chr1 184494387 184495538 -97698126 + L1MC3 LINE L1 4747 4787 -1359 2112 18 0 0 chr1 184495538 184495767 -97697897 + AluYb8 SINE Alu 84 312 -6 6162 188 30 20 chr1 184495767 184496377 -97697287 + L1MC3 LINE L1 4787 5389 -757 299 95 0 0 chr1 184496377 184496419 -97697245 + L1MC3 LINE L1 6905 6946 -839 404 185 44 44 chr1 184496428 184497217 -97696447 + L1MC2 LINE L1 6139 7728 -1 739 189 8 0 chr1 184497230 184497362 -97696302 + MER5B DNA MER1_type 46 178 0 294 310 130 0 chr1 184497623 184497723 -97695941 + L2 LINE L2 3151 3263 -9 361 228 18 79 chr1 184498435 184498549 -97695115 - MIR SINE MIR -55 153 47 770 263 49 22 chr1 184498599 184498823 -97694841 - MIR SINE MIR -25 237 8 461 269 39 8 chr1 184498828 184498958 -97694706 - MER94 DNA DNA 0 134 1 1243 227 181 33 chr1 184499655 184500109 -97693555 + LTR33 LTR ERVL 1 521 0 598 315 98 11 chr1 184500321 184500726 -97692938 + L2 LINE L2 2636 3074 -239 270 233 144 67 chr1 184500994 184501084 -97692580 - L2 LINE L2 -43 3229 3133 5673 140 40 16 chr1 184501275 184502652 -97691012 - L1MA8 LINE L1 -2 6289 4880 433 275 129 60 chr1 184502781 184502935 -97690729 - MLT1H LTR MaLR -185 364 222 2201 146 102 46 chr1 184502935 184503334 -97690330 + MLT2C2 LTR ERVL 1 429 -35 390 42 0 0 chr1 184503334 184503382 -97690282 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 146 102 46 chr1 184503382 184503421 -97690243 + MLT2C2 LTR ERVL 429 464 0 433 275 129 60 chr1 184503421 184503600 -97690064 - MLT1H LTR MaLR -327 222 8 416 343 78 30 chr1 184503602 184504180 -97689484 - L2 LINE L2 -218 3054 2368 869 304 73 36 chr1 184505335 184505776 -97687888 + LTR16B LTR ERVL 1 457 -7 2763 23 0 0 chr1 184506052 184506361 -97687303 + AluY SINE Alu 1 309 -2 256 340 27 20 chr1 184506386 184506533 -97687131 - L2 LINE L2 -231 3041 2894 220 350 0 21 chr1 184506811 184506908 -97686756 - L2 LINE L2 -592 2722 2628 1964 144 0 13 chr1 184506911 184507196 -97686468 + AluSx SINE Alu 1 283 -29 276 53 0 0 chr1 184507196 184507234 -97686430 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 1964 144 0 13 chr1 184507234 184507246 -97686418 + AluSx SINE Alu 283 294 -18 216 0 0 0 chr1 184507618 184507642 -97686022 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 1662 34 34 0 chr1 184507642 184507849 -97685815 - L1PA7 LINE L1 -10 6144 5931 3303 159 39 47 chr1 184507910 184508179 -97685485 + L1MC2 LINE L1 5580 5850 -494 2139 111 0 0 chr1 184508179 184508458 -97685206 + AluSx SINE Alu 1 279 -33 183 42 0 0 chr1 184508458 184508482 -97685182 + (CA)n Simple_repeat Simple_repeat 1 24 0 3303 159 39 47 chr1 184508482 184508978 -97684686 + L1MC2 LINE L1 5848 6340 -4 440 90 15 0 chr1 184509499 184509566 -97684098 + MER41B LTR ERV1 482 549 -86 808 147 0 22 chr1 184509584 184509720 -97683944 + FLAM_C SINE Alu 1 133 0 1921 147 67 19 chr1 184509848 184510222 -97683442 - L1MA8 LINE L1 -22 7229 6838 5928 148 30 16 chr1 184510240 184510586 -97683078 - L1PB1 LINE L1 -7 6860 6521 300 53 0 0 chr1 184510586 184510624 -97683040 + (TG)n Simple_repeat Simple_repeat 2 39 0 279 0 0 0 chr1 184510623 184510654 -97683010 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 5928 148 30 16 chr1 184510624 184511482 -97682182 - L1PB1 LINE L1 -346 6521 5643 2394 74 3 0 chr1 184511482 184511781 -97681883 - AluY SINE Alu -11 300 1 5928 148 30 16 chr1 184511781 184512469 -97681195 - L1PB1 LINE L1 -1224 5643 4966 5665 160 65 17 chr1 184512470 184513968 -97679696 - L1PB1 LINE L1 -5143 1720 1 11852 173 36 25 chr1 184513983 184514077 -97679587 - L1MA8 LINE L1 -403 6848 6757 189 0 0 0 chr1 184514077 184514098 -97679566 + (TG)n Simple_repeat Simple_repeat 2 22 0 11852 173 36 25 chr1 184514098 184517107 -97676557 - L1MA8 LINE L1 -494 6757 3718 242 271 165 12 chr1 184517143 184517228 -97676436 + MIR SINE MIR 154 251 -11 558 165 0 39 chr1 184517306 184517409 -97676255 - FLAM_A SINE Alu -13 129 31 3064 82 22 22 chr1 184518168 184518629 -97675035 + L1PA13 LINE L1 5703 6163 0 194 323 0 15 chr1 184518698 184518763 -97674901 - MIR SINE MIR -81 127 64 189 171 0 0 chr1 184518971 184519006 -97674658 + (CA)n Simple_repeat Simple_repeat 2 36 0 4739 246 96 47 chr1 184519414 184520262 -97673402 - L1MA8 LINE L1 -3382 3724 2919 2261 125 35 3 chr1 184520262 184520639 -97673025 + L1MA2 LINE L1 5912 6300 -4 4739 246 96 47 chr1 184520639 184523585 -97670079 - L1MA8 LINE L1 -4187 2919 1 2186 146 39 8 chr1 184523950 184524314 -97669350 + THE1C LTR MaLR 1 375 0 384 234 90 0 chr1 184525343 184525454 -97668210 + MIR SINE MIR 87 207 -55 278 206 15 15 chr1 184525648 184525716 -97667948 + MER4-int LTR ERV1 1095 1162 -5436 227 284 0 32 chr1 184525901 184526019 -97667645 + GA-rich Low_complexity Low_complexity 1 114 0 735 271 53 12 chr1 184526020 184526267 -97667397 + MIR SINE MIR 5 261 -1 296 291 79 44 chr1 184526297 184526524 -97667140 + MIR SINE MIR 2 236 -26 504 307 14 0 chr1 184527384 184527524 -97666140 + MIR3 SINE MIR 61 202 -6 200 292 33 50 chr1 184528154 184528274 -97665390 + L2 LINE L2 2557 2674 -640 279 352 125 45 chr1 184528561 184528896 -97664768 + L2 LINE L2 2943 3304 -9 244 345 92 0 chr1 184530024 184530143 -97663521 + MIR SINE MIR 59 188 -74 341 266 158 19 chr1 184530477 184530635 -97663029 - L1ME4a LINE L1 -3 6118 5939 515 237 7 66 chr1 184531285 184531331 -97662333 - L1ME4a LINE L1 -467 5654 5607 2218 86 0 51 chr1 184531331 184531645 -97662019 - AluSq SINE Alu -15 298 1 515 237 7 66 chr1 184531645 184531750 -97661914 - L1ME4a LINE L1 -514 5607 5512 295 297 40 57 chr1 184532182 184532357 -97661307 + L2 LINE L2 2872 3043 -229 521 252 71 51 chr1 184532461 184532675 -97660989 - MER112 DNA MER1_type -1 259 38 1273 120 5 18 chr1 184532675 184532892 -97660772 - L1MA6 LINE L1 0 6300 6087 521 252 71 51 chr1 184532892 184532931 -97660733 - MER112 DNA MER1_type -222 38 1 302 264 157 3 chr1 184533350 184533527 -97660137 + MIR SINE MIR 18 260 -2 713 247 77 97 chr1 184533546 184534064 -97659600 + MLT1J LTR MaLR 1 508 -3 23 0 0 0 chr1 184535153 184535176 -97658488 + AT_rich Low_complexity Low_complexity 1 23 0 260 284 12 0 chr1 184535344 184535425 -97658239 - L1MC4a LINE L1 -1892 5916 5835 1791 219 14 11 chr1 184535461 184535827 -97657837 - MSTD LTR MaLR -29 367 1 301 253 13 0 chr1 184535827 184535902 -97657762 - L1MC4a LINE L1 -360 5802 5727 235 263 166 44 chr1 184536039 184536244 -97657420 + L1MC/D LINE L1 5381 5610 -2198 655 236 9 9 chr1 184536259 184536685 -97656979 + (TATG)n Simple_repeat Simple_repeat 1 425 0 244 182 0 0 chr1 184536685 184536729 -97656935 - L1MC4 LINE L1 -1339 6703 6660 327 328 77 16 chr1 184536729 184536912 -97656752 + MIR SINE MIR 68 261 -1 399 301 20 46 chr1 184537011 184537207 -97656457 + MIR SINE MIR 24 214 -48 212 254 0 0 chr1 184537410 184537473 -97656191 + A-rich Low_complexity Low_complexity 1 63 0 190 259 0 52 chr1 184537833 184537891 -97655773 - L2 LINE L2 -233 3039 2985 196 254 28 42 chr1 184538731 184538802 -97654862 - MIR3 SINE MIR -42 166 97 1494 310 114 20 chr1 184538806 184539358 -97654306 + MER115 DNA AcHobo 2 605 -88 2128 192 31 21 chr1 184539358 184539987 -97653677 - Charlie1a DNA MER1_type -5 1450 751 5381 174 22 30 chr1 184539987 184541995 -97651669 - L1MA10 LINE L1 -2 6332 4340 2312 193 42 61 chr1 184542058 184542696 -97650968 - Charlie1a DNA MER1_type -722 733 108 327 218 0 64 chr1 184542733 184542811 -97650853 + Zaphod DNA AcHobo 3959 4031 0 246 128 0 0 chr1 184543526 184543565 -97650099 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 2038 150 7 0 chr1 184543565 184543871 -97649793 - AluSx SINE Alu -4 308 1 241 314 46 78 chr1 184544883 184545043 -97648621 - MIR3 SINE MIR -62 146 3 1859 231 42 7 chr1 184545581 184546032 -97647632 + MLT1C LTR MaLR 1 467 0 183 362 64 30 chr1 184546194 184546459 -97647205 + L2 LINE L2 2818 3091 -181 1043 156 39 0 chr1 184546710 184546890 -97646774 - MER20 DNA MER1_type -6 213 27 413 261 241 14 chr1 184547021 184547228 -97646436 + MIR SINE MIR 2 255 -7 21 36 0 0 chr1 184547494 184547522 -97646142 + AT_rich Low_complexity Low_complexity 1 28 0 226 226 0 16 chr1 184547715 184547777 -97645887 + (CA)n Simple_repeat Simple_repeat 2 62 0 295 318 106 45 chr1 184548177 184548309 -97645355 + MIR3 SINE MIR 2 141 -67 204 256 0 0 chr1 184548848 184548887 -97644777 + L2 LINE L2 3222 3260 -12 373 249 6 6 chr1 184550456 184550629 -97643035 + (TA)n Simple_repeat Simple_repeat 1 173 0 1993 145 13 7 chr1 184550818 184551128 -97642536 - AluSx SINE Alu 0 312 1 536 327 27 18 chr1 184551303 184551526 -97642138 + L2 LINE L2 2369 2593 -721 672 213 126 33 chr1 184551531 184551631 -97642033 - MER58C DNA MER1_type -2220 200 111 1439 224 22 35 chr1 184551631 184552001 -97641663 - MLT1A1 LTR MaLR 0 365 1 672 213 126 33 chr1 184552001 184552083 -97641581 - MER58C DNA MER1_type -2309 111 1 370 362 84 23 chr1 184552088 184552477 -97641187 + L2 LINE L2 2583 3027 -245 364 265 202 44 chr1 184552524 184552638 -97641026 - LTR16A1 LTR ERVL 0 457 362 1344 292 24 13 chr1 184552638 184553097 -97640567 - LTR16B LTR ERVL 0 464 1 364 265 202 44 chr1 184553097 184553344 -97640320 - LTR16A1 LTR ERVL -95 362 73 299 358 128 0 chr1 184553487 184553596 -97640068 + L2 LINE L2 3134 3256 -16 259 390 0 21 chr1 184554099 184554194 -97639470 + MIR SINE MIR 20 112 -150 2411 153 41 7 chr1 184554300 184554711 -97638953 - MSTB LTR MaLR 0 426 2 1100 297 32 23 chr1 184554716 184555063 -97638601 + MLT1I LTR MaLR 60 409 0 882 213 0 0 chr1 184555729 184555893 -97637771 - MER58B DNA MER1_type -1 340 177 272 284 37 12 chr1 184556145 184556226 -97637438 - L2 LINE L2 -900 2414 2332 803 122 0 8 chr1 184556742 184556865 -97636799 - L1PA4 LINE L1 -231 5924 5803 * 2242 63 0 20 chr1 184556838 184557140 -97636524 + L1PA4 LINE L1 5860 6155 0 32 0 0 0 chr1 184557140 184557172 -97636492 + AT_rich Low_complexity Low_complexity 1 32 0 235 259 0 0 chr1 184557483 184557537 -97636127 + MIR SINE MIR 3 56 -206 273 196 0 0 chr1 184557643 184557699 -97635965 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 333 303 0 0 chr1 184557704 184557793 -97635871 - L1MC4 LINE L1 -1339 6703 6615 233 119 24 0 chr1 184557794 184557836 -97635828 + (TA)n Simple_repeat Simple_repeat 1 43 0 349 292 0 0 chr1 184557841 184557930 -97635734 - L1MC4 LINE L1 -1339 6703 6615 311 192 27 14 chr1 184557910 184557983 -97635681 - L1MCa LINE L1 -4358 2068 1995 * 226 244 26 0 chr1 184557993 184558071 -97635593 + L1MC4 LINE L1 6614 6693 -1349 219 69 0 0 chr1 184558804 184558833 -97634831 + (TTA)n Simple_repeat Simple_repeat 2 30 0 732 196 22 0 chr1 184558927 184559065 -97634599 + FRAM SINE Alu 11 151 -25 583 339 126 20 chr1 184560002 184560527 -97633137 + L2 LINE L2 2573 3162 -151 1806 124 8 113 chr1 184560527 184560915 -97632749 + MER7A DNA MER2_type 1 345 -1 2089 139 25 27 chr1 184562632 184563277 -97630387 - MER39 LTR ERV1 -1 706 1 651 296 61 20 chr1 184563344 184563591 -97630073 + MIR SINE MIR 6 262 0 1127 169 35 0 chr1 184563736 184563937 -97629727 - MER6B DNA MER2_type -1 209 2 25 0 0 0 chr1 184563937 184563962 -97629702 + AT_rich Low_complexity Low_complexity 1 25 0 442 289 117 26 chr1 184563980 184564246 -97629418 + L2 LINE L2 2614 2903 -411 1319 219 11 30 chr1 184564251 184564763 -97628901 - L1PB4 LINE L1 -4 6299 5808 778 332 86 22 chr1 184564786 184565147 -97628517 + L2 LINE L2 2930 3313 0 520 317 27 6 chr1 184565703 184565888 -97627776 + MIR3 SINE MIR 6 195 -13 213 200 0 0 chr1 184566906 184566946 -97626718 + CT-rich Low_complexity Low_complexity 2 41 0 318 265 120 8 chr1 184569273 184569390 -97624274 - MIR3 SINE MIR -43 165 36 1481 128 7 28 chr1 184572304 184572586 -97621078 - L1MA4 LINE L1 -5 6295 6020 314 296 26 0 chr1 184573664 184573779 -97619885 + (TA)n Simple_repeat Simple_repeat 2 119 0 216 0 0 0 chr1 184573779 184573803 -97619861 + (CA)n Simple_repeat Simple_repeat 2 25 0 20284 31 2 0 chr1 184576454 184579665 -97613999 + L1PA4 LINE L1 2940 6152 -3 404 115 62 115 chr1 184579704 184579817 -97613847 - MIR SINE MIR -68 194 88 321 26 0 0 chr1 184580322 184580360 -97613304 + tRNA-Lys-AAG tRNA tRNA 1 38 -38 1974 116 3 11 chr1 184580529 184580814 -97612850 + AluSx SINE Alu 3 285 -27 225 0 0 0 chr1 184580814 184580839 -97612825 + (TG)n Simple_repeat Simple_repeat 2 26 0 225 200 0 0 chr1 184580843 184580898 -97612766 - L1MC4 LINE L1 -1339 6703 6649 503 316 31 36 chr1 184580910 184581135 -97612529 - MIR SINE MIR -25 237 14 393 282 17 28 chr1 184581154 184581335 -97612329 + A-rich Low_complexity Low_complexity 2 180 0 294 29 0 0 chr1 184581930 184581965 -97611699 + (CA)n Simple_repeat Simple_repeat 2 36 0 369 372 145 8 chr1 184582462 184583131 -97610533 + L2 LINE L2 2374 3123 -149 21 0 0 0 chr1 184583581 184583602 -97610062 + AT_rich Low_complexity Low_complexity 1 21 0 570 261 64 39 chr1 184583699 184583902 -97609762 - MIR SINE MIR -53 209 2 209 341 59 12 chr1 184584723 184584808 -97608856 - MIR SINE MIR -148 114 26 188 268 99 42 chr1 184584954 184585025 -97608639 + MER5A DNA MER1_type 46 120 -69 210 203 0 51 chr1 184584955 184585014 -97608650 - MER5B DNA MER1_type -36 142 87 250 257 14 27 chr1 184585337 184585411 -97608253 - MIR SINE MIR -65 197 125 198 0 0 0 chr1 184585934 184585956 -97607708 + (TTA)n Simple_repeat Simple_repeat 2 23 0 470 298 139 38 chr1 184586279 184587506 -97606158 - L1ME LINE L1 -610 5535 4188 4216 60 0 4 chr1 184587619 184588154 -97605510 - L1PA5 LINE L1 0 6154 5622 1367 40 0 0 chr1 184588156 184588332 -97605332 + L1P LINE L1 4854 5029 -1117 381 276 37 0 chr1 184588360 184588494 -97605170 - L1ME LINE L1 -2113 4016 3878 233 238 92 39 chr1 184588493 184588699 -97604965 - L1ME LINE L1 -3639 2490 2274 * 32 26 0 0 chr1 184588703 184588742 -97604922 + AT_rich Low_complexity Low_complexity 1 39 0 6714 128 34 48 chr1 184589066 184590315 -97603349 - Tigger3b DNA MER2_type 0 1231 1 319 313 14 73 chr1 184590449 184590796 -97602868 - L1MEc LINE L1 -4485 1669 1359 252 241 182 51 chr1 184590867 184591103 -97602561 - L1MEc LINE L1 -4906 1213 947 24 0 0 0 chr1 184591105 184591129 -97602535 + AT_rich Low_complexity Low_complexity 1 24 0 403 300 116 46 chr1 184591192 184591716 -97601948 + L1M4 LINE L1 4177 4737 -1409 4011 124 64 54 chr1 184592003 184592780 -97600884 + LTR1 LTR ERV1 1 785 0 282 217 0 0 chr1 184593192 184593261 -97600403 + GA-rich Low_complexity Low_complexity 4 72 0 22 0 0 0 chr1 184594457 184594479 -97599185 + AT_rich Low_complexity Low_complexity 1 22 0 1183 141 11 22 chr1 184594964 184595148 -97598516 - AluSx SINE Alu -130 182 1 282 166 7 112 chr1 184595838 184595942 -97597722 - MLT1H LTR MaLR 0 585 491 29292 69 16 13 chr1 184596564 184600563 -97593101 + HERVL-A1 LTR ERVL 1646 5654 0 2587 73 69 82 chr1 184600564 184601013 -97592651 + MLT2A1 LTR ERVL 2 444 0 213 356 30 10 chr1 184601015 184601116 -97592548 + MIR SINE MIR 117 219 -43 270 337 61 25 chr1 184601478 184601674 -97591990 + LTR67 LTR ERVL 353 555 -2 321 333 72 0 chr1 184601747 184601885 -97591779 + MIR SINE MIR 7 154 -108 2529 135 30 0 chr1 184601942 184602341 -97591323 - L1PA15 LINE L1 -7 6158 5748 730 259 186 52 chr1 184602374 184602795 -97590869 - L2 LINE L2 -76 3237 2758 540 179 0 0 chr1 184602806 184602890 -97590774 + AluJ/FLAM SINE Alu 1 84 -228 192 353 73 61 chr1 184603339 184603668 -97589996 + L2 LINE L2 2884 3216 -56 543 90 0 0 chr1 184603741 184603819 -97589845 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 398 292 58 17 chr1 184605381 184605557 -97588107 - MIR SINE MIR -18 244 59 2060 129 0 0 chr1 184605681 184605961 -97587703 + AluSq SINE Alu 1 280 -33 300 53 0 0 chr1 184605961 184605999 -97587665 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1680 143 20 0 chr1 184606196 184606539 -97587125 - L1PA16 LINE L1 -9 6157 5730 2684 83 3 0 chr1 184607205 184607556 -97586108 - THE1A LTR MaLR -1 354 3 11020 102 25 0 chr1 184607558 184609100 -97584564 - THE1A-int LTR MaLR 0 1580 1 2245 104 60 0 chr1 184609100 184609435 -97584229 - THE1A LTR MaLR 0 355 1 285 125 0 0 chr1 184609553 184609609 -97584055 + (T)n Simple_repeat Simple_repeat 1 56 0 374 372 112 43 chr1 184609942 184610426 -97583238 + L3 LINE CR1 27 543 -1034 213 200 0 0 chr1 184610430 184610476 -97583188 + (TG)n Simple_repeat Simple_repeat 1 46 0 1453 288 88 59 chr1 184610483 184610644 -97583020 - L2 LINE L2 -185 3128 2973 1919 140 0 11 chr1 184610644 184610972 -97582692 - AluSx SINE Alu 0 330 6 1453 288 88 59 chr1 184610972 184611611 -97582053 - L2 LINE L2 -340 2973 2322 317 333 83 0 chr1 184611660 184611804 -97581860 + L1M4 LINE L1 4903 5058 -1088 250 331 39 28 chr1 184612158 184612336 -97581328 - L1ME LINE L1 -5866 204 25 873 302 112 24 chr1 184612354 184613061 -97580603 + L1MB2 LINE L1 2552 3380 -2766 180 0 0 0 chr1 184613061 184613081 -97580583 + (TG)n Simple_repeat Simple_repeat 1 20 0 873 302 112 24 chr1 184613081 184613410 -97580254 + L1MB2 LINE L1 3380 3679 -2467 24 0 0 0 chr1 184613434 184613458 -97580206 + AT_rich Low_complexity Low_complexity 1 24 0 2575 82 3 3 chr1 184613630 184613985 -97579679 + L1PA10 LINE L1 5810 6164 -4 428 318 44 35 chr1 184614032 184614347 -97579317 + L1MB2 LINE L1 3939 4256 -1890 1500 232 87 18 chr1 184614431 184614866 -97578798 - MLT1C LTR MaLR -2 465 1 342 253 42 84 chr1 184614932 184615098 -97578566 + L1MB2 LINE L1 4501 4659 -1487 1696 270 79 21 chr1 184615182 184615871 -97577793 - HsTC2c DNA Tc2 -3 726 1 574 288 132 45 chr1 184615871 184616286 -97577378 + L1MB2 LINE L1 4744 5201 -945 1506 199 36 0 chr1 184616286 184616563 -97577101 + AluJb SINE Alu 3 289 -23 574 288 132 45 chr1 184616563 184616588 -97577076 + L1MB2 LINE L1 5201 5222 -924 218 54 0 54 chr1 184616629 184616666 -97576998 + (TATG)n Simple_repeat Simple_repeat 2 36 0 242 182 0 21 chr1 184616666 184616740 -97576924 - L1MC4 LINE L1 -1340 6982 2003 324 87 0 0 chr1 184616774 184616820 -97576844 - MADE1 DNA Mariner -34 46 1 3400 178 20 25 chr1 184616871 184617620 -97576044 + L1MB2 LINE L1 5333 6128 -43 2908 144 18 45 chr1 184617619 184618176 -97575488 + L1MA7 LINE L1 5709 6250 -41 * 226 237 21 32 chr1 184618101 184618179 -97575485 + L1PB4 LINE L1 6059 6137 -19 * 5081 116 45 27 chr1 184618179 184619922 -97573742 + L1PA16 LINE L1 4397 6150 -16 226 237 21 32 chr1 184619922 184619936 -97573728 + L1PB4 LINE L1 6137 6150 -6 25 65 0 0 chr1 184619942 184619988 -97573676 + AT_rich Low_complexity Low_complexity 1 46 0 2163 84 3 21 chr1 184620198 184620506 -97573158 - AluSg SINE Alu 0 303 1 298 221 49 85 chr1 184620690 184620911 -97572753 + L1M1 LINE L1 5290 5457 -846 841 269 65 59 chr1 184621224 184621685 -97571979 + L1ME3 LINE L1 5488 5951 -211 1499 257 67 46 chr1 184621955 184622627 -97571037 + L1MC4a LINE L1 5256 5941 -1867 1010 302 173 16 chr1 184622878 184623451 -97570213 - L2 LINE L2 -1061 2253 1591 259 321 126 83 chr1 184623492 184623866 -97569798 + L3 LINE CR1 974 1363 -214 580 195 27 0 chr1 184623981 184624130 -97569534 - L1M4 LINE L1 -806 5340 5188 211 179 36 0 chr1 184624237 184624293 -97569371 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 309 297 100 23 chr1 184624464 184624983 -97568681 - L1 LINE L1 -2955 3191 2630 2590 234 58 24 chr1 184624999 184625757 -97567907 + L1ME1 LINE L1 5365 6148 -18 23 0 0 0 chr1 184625775 184625798 -97567866 + AT_rich Low_complexity Low_complexity 1 23 0 667 342 39 29 chr1 184625824 184626239 -97567425 + L1MEc LINE L1 57 475 -5921 216 0 0 0 chr1 184626726 184626750 -97566914 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 258 258 125 17 chr1 184626768 184626888 -97566776 + L1MEc LINE L1 1599 1731 -4665 258 283 37 21 chr1 184626945 184627136 -97566528 + L1MEc LINE L1 3199 3392 -2823 335 282 0 28 chr1 184627252 184627368 -97566296 + L1MEc LINE L1 3580 3686 -2529 1736 298 39 5 chr1 184627373 184627949 -97565715 + L1M3a LINE L1 11 746 -5209 1527 223 11 8 chr1 184627947 184628311 -97565353 + L1 LINE L1 4866 5230 -916 * 319 353 39 77 chr1 184628624 184628831 -97564833 + L2 LINE L2 3071 3269 -3 211 325 34 77 chr1 184629628 184629695 -97563969 + MIR SINE MIR 61 129 -133 2378 168 21 14 chr1 184629695 184630118 -97563546 + MSTB LTR MaLR 1 426 0 8378 188 37 5 chr1 184630118 184631716 -97561948 + MSTB-int LTR MaLR 1 1649 -2 2512 161 19 9 chr1 184631718 184632140 -97561524 + MSTB LTR MaLR 1 426 0 211 325 34 77 chr1 184632140 184632185 -97561479 + MIR SINE MIR 129 172 -90 243 61 0 0 chr1 184632829 184632862 -97560802 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1723 176 7 0 chr1 184632868 184633141 -97560523 - AluJo SINE Alu -36 276 2 286 127 16 16 chr1 184633162 184633225 -97560439 + (TA)n Simple_repeat Simple_repeat 1 63 0 308 37 3 0 chr1 184633235 184633280 -97560384 + L1P4 LINE L1 5403 5448 -717 442 274 34 33 chr1 184633425 184633619 -97560045 + MIR SINE MIR 15 145 -63 288 258 25 58 chr1 184634031 184634151 -97559513 - MIR SINE MIR -66 196 81 6683 80 5 3 chr1 184634290 184635726 -97557938 - L1PA10 LINE L1 0 6168 4730 370 315 51 41 chr1 184636760 184636957 -97556707 - L2 LINE L2 -208 3064 2866 2025 134 3 0 chr1 184637209 184637492 -97556172 + AluSx SINE Alu 1 284 -28 218 317 0 0 chr1 184637624 184637684 -97555980 - L2 LINE L2 -556 2758 2699 387 267 33 0 chr1 184638480 184638570 -97555094 + MIR3 SINE MIR 69 161 -47 2012 112 11 3 chr1 184638833 184639142 -97554522 - AluSg SINE Alu 0 310 1 283 286 36 12 chr1 184640078 184640162 -97553502 + MIR SINE MIR 33 118 -90 189 159 0 0 chr1 184640376 184640420 -97553244 + CT-rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr1 184640973 184641001 -97552663 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 184642661 184642689 -97550975 + AT_rich Low_complexity Low_complexity 1 28 0 243 180 0 0 chr1 184643631 184643681 -97549983 + (TA)n Simple_repeat Simple_repeat 1 50 0 439 307 65 60 chr1 184646358 184646573 -97547091 - MIR SINE MIR -8 254 39 2094 114 6 19 chr1 184646590 184646906 -97546758 - AluSx SINE Alu 0 312 1 745 269 103 13 chr1 184647096 184647330 -97546334 - MIR SINE MIR 0 262 8 410 313 84 18 chr1 184647832 184647998 -97545666 - MIR3 SINE MIR -15 193 17 241 217 0 58 chr1 184648609 184648678 -97544986 - MIR SINE MIR -124 138 74 22 0 0 0 chr1 184648951 184648973 -97544691 + AT_rich Low_complexity Low_complexity 1 22 0 254 236 0 56 chr1 184649999 184650088 -97543576 + A-rich Low_complexity Low_complexity 3 86 0 1935 125 82 20 chr1 184650139 184650492 -97543172 + THE1C LTR MaLR 1 375 0 2034 144 25 14 chr1 184650494 184650849 -97542815 - MER46B DNA MER2_type -2 234 1 359 305 39 8 chr1 184650851 184650979 -97542685 - MIR SINE MIR -49 213 82 372 307 91 98 chr1 184651891 184652155 -97541509 - L2 LINE L2 -32 3240 2979 230 155 28 42 chr1 184652303 184652374 -97541290 + (TA)n Simple_repeat Simple_repeat 1 70 0 206 146 62 0 chr1 184652476 184652524 -97541140 + (TA)n Simple_repeat Simple_repeat 2 52 0 246 141 28 42 chr1 184653516 184653587 -97540077 + (TA)n Simple_repeat Simple_repeat 1 70 0 197 116 0 47 chr1 184653631 184653674 -97539990 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 523 236 46 52 chr1 184654871 184655045 -97538619 + MIR SINE MIR 90 262 0 21 36 0 0 chr1 184655057 184655085 -97538579 + AT_rich Low_complexity Low_complexity 1 28 0 612 288 50 0 chr1 184655443 184655603 -97538061 + MIR SINE MIR 92 259 -3 24 0 0 0 chr1 184655605 184655629 -97538035 + AT_rich Low_complexity Low_complexity 1 24 0 882 168 254 49 chr1 184656418 184656662 -97537002 - AluJo SINE Alu -8 294 1 229 306 0 30 chr1 184656958 184657092 -97536572 + GA-rich Low_complexity Low_complexity 2 131 0 7170 101 8 26 chr1 184657110 184658186 -97535478 - MER11C LTR ERVK -14 1057 1 196 114 68 0 chr1 184658467 184658511 -97535153 + (CATA)n Simple_repeat Simple_repeat 2 48 0 200 182 0 36 chr1 184658555 184658610 -97535054 + (CATA)n Simple_repeat Simple_repeat 2 54 0 277 303 79 0 chr1 184659439 184659528 -97534136 + L3 LINE CR1 436 531 -1046 214 284 80 11 chr1 184660049 184660137 -97533527 + L3 LINE CR1 631 724 -853 185 333 62 39 chr1 184660105 184660234 -97533430 - MIR3 SINE MIR -72 136 5 * 228 309 113 0 chr1 184660258 184660355 -97533309 - MIR SINE MIR -96 166 59 215 143 89 0 chr1 184663482 184663538 -97530126 + (GTTTG)n Simple_repeat Simple_repeat 2 62 0 2487 60 7 3 chr1 184664308 184664610 -97529054 + AluSp SINE Alu 1 303 -10 328 308 141 16 chr1 184717299 184717484 -97476180 - MIR SINE MIR -6 256 49 443 269 7 55 chr1 184717509 184717654 -97476010 - MER5A DNA MER1_type 0 189 52 1343 134 40 5 chr1 184718294 184718517 -97475147 - Tigger1 DNA MER2_type 0 2418 2188 2401 77 0 34 chr1 184718617 184718848 -97474816 + L1PA8 LINE L1 5836 6053 -119 2451 57 10 0 chr1 184718848 184719148 -97474516 + AluY SINE Alu 1 303 -8 2401 77 0 34 chr1 184719148 184719265 -97474399 + L1PA8 LINE L1 6053 6172 0 245 75 25 0 chr1 184719281 184719321 -97474343 + (CA)n Simple_repeat Simple_repeat 2 42 0 229 351 218 0 chr1 184719353 184719555 -97474109 + MIR SINE MIR 1 246 -16 3391 204 20 9 chr1 184720599 184721246 -97472418 + MER21-int LTR ERV1 2642 3295 -896 267 270 0 16 chr1 184721272 184721335 -97472329 + MER21B LTR ERV1 24 85 -778 2752 224 122 40 chr1 184721362 184722115 -97471549 + MER21B LTR ERV1 19 833 -30 270 311 79 51 chr1 184724112 184724289 -97469375 - MIR3 SINE MIR -7 201 20 341 241 121 20 chr1 184724339 184724538 -97469126 + L1MC5 LINE L1 7461 7679 -282 4382 101 29 8 chr1 184724600 184725265 -97468399 + L1PB2 LINE L1 5470 6148 -3 36 91 0 0 chr1 184725270 184725369 -97468295 + AT_rich Low_complexity Low_complexity 1 99 0 269 242 15 0 chr1 184725574 184725640 -97468024 - MIR SINE MIR -131 131 65 51 42 0 0 chr1 184727819 184727891 -97465773 + AT_rich Low_complexity Low_complexity 1 72 0 879 176 13 7 chr1 184728327 184728480 -97465184 - FRAM SINE Alu -22 154 1 286 167 0 0 chr1 184728534 184728582 -97465082 - FLAM_A SINE Alu -12 121 74 24 32 0 0 chr1 184729162 184729193 -97464471 + AT_rich Low_complexity Low_complexity 1 31 0 818 203 7 0 chr1 184729195 184729343 -97464321 - FRAM SINE Alu -24 152 4 376 368 74 6 chr1 184729444 184729607 -97464057 - MIR3 SINE MIR -20 188 15 28 29 0 0 chr1 184729741 184729776 -97463888 + AT_rich Low_complexity Low_complexity 1 35 0 339 253 11 11 chr1 184730883 184730978 -97462686 - MER112 DNA MER1_type -162 98 4 1141 242 8 24 chr1 184731622 184731874 -97461790 - MIR SINE MIR 0 262 15 329 319 43 0 chr1 184732631 184732725 -97460939 - MIR3 SINE MIR -7 201 104 322 234 64 21 chr1 184732718 184732812 -97460852 - L2 LINE L2 -8 3305 3208 * 727 226 68 27 chr1 184733452 184733673 -97459991 - MER112 DNA MER1_type -25 235 6 372 22 0 0 chr1 184733686 184733731 -97459933 + (CA)n Simple_repeat Simple_repeat 1 45 0 1393 191 0 27 chr1 184733732 184733989 -97459675 - AluJo SINE Alu -25 287 38 229 349 55 0 chr1 184734331 184734440 -97459224 + L3 LINE CR1 722 836 -741 1039 184 20 56 chr1 184734477 184734727 -97458937 + L1MB1 LINE L1 5928 6168 0 775 141 33 0 chr1 184735592 184735713 -97457951 + MLT1A1 LTR MaLR 241 365 0 1735 182 30 38 chr1 184735880 184736248 -97457416 + MLT1A1 LTR MaLR 1 365 0 374 311 39 22 chr1 184736364 184736544 -97457120 - MIR SINE MIR 0 262 80 312 303 48 35 chr1 184736582 184736727 -97456937 - L1ME LINE L1 -334 5828 5682 264 286 145 38 chr1 184736808 184737070 -97456594 - L1ME LINE L1 -612 5558 5269 640 230 37 31 chr1 184737471 184737530 -97456134 + AluJo SINE Alu 85 142 -170 1839 49 5 0 chr1 184737530 184737754 -97455910 + AluY SINE Alu 87 311 0 640 230 37 31 chr1 184737754 184737885 -97455779 + AluJo SINE Alu 142 276 -36 2360 129 10 0 chr1 184737985 184738452 -97455212 - L1P4 LINE L1 -730 5431 4961 1711 149 54 40 chr1 184738452 184738822 -97454842 - THE1C LTR MaLR 0 375 1 9915 127 4 43 chr1 184738822 184740465 -97453199 - THE1C-int LTR MaLR 0 1580 1 262 32 0 0 chr1 184740465 184740496 -97453168 - THE1C LTR MaLR 0 364 334 446 197 31 94 chr1 184740521 184740648 -97453016 + MER34C-int LTR ERV1 4616 4734 -202 195 322 0 0 chr1 184740774 184740833 -97452831 - MIR SINE MIR -202 60 2 1008 208 48 6 chr1 184741215 184741464 -97452200 + MER34C-int LTR ERV1 4020 4248 -688 284 179 217 38 chr1 184741471 184741577 -97452087 + LTR37A LTR ERV1 4 128 -298 1050 231 79 39 chr1 184741578 184741933 -97451731 + MER34C-int LTR ERV1 4366 4734 -202 2115 186 83 57 chr1 184742017 184742297 -97451367 + MER34C LTR ERV1 8 279 -306 2860 129 11 11 chr1 184742297 184742745 -97450919 - MER83 LTR ERV1 0 448 1 2115 186 83 57 chr1 184742745 184743027 -97450637 + MER34C LTR ERV1 279 585 0 667 244 137 49 chr1 184743541 184744046 -97449618 - LTR48 LTR ERV1 -2 593 157 350 278 118 1 chr1 184744013 184744123 -97449541 - MER34 LTR ERV1 -430 121 1 * 299 263 108 43 chr1 184744682 184744868 -97448796 + MIR SINE MIR 42 239 -23 1805 178 0 0 chr1 184746584 184746876 -97446788 - AluJb SINE Alu -20 292 1 24 91 0 0 chr1 184747278 184747344 -97446320 + AT_rich Low_complexity Low_complexity 1 66 0 252 320 115 33 chr1 184747519 184747641 -97446023 - MIR3 SINE MIR -67 141 10 210 385 24 6 chr1 184747862 184748031 -97445633 + L2 LINE L2 2809 2980 -292 557 188 12 71 chr1 184748323 184748493 -97445171 + MER53 DNA DNA 30 189 0 184 282 0 0 chr1 184748618 184748657 -97445007 - L3 LINE CR1 -23 1554 1516 1774 116 8 127 chr1 184748904 184749282 -97444382 + MER1B DNA MER1_type 1 333 -4 267 329 35 0 chr1 184749884 184749969 -97443695 + L2 LINE L2 3223 3310 -3 2613 145 35 13 chr1 184751798 184752253 -97441411 + MLT1C LTR MaLR 3 467 0 329 196 0 0 chr1 184752746 184752837 -97440827 + Alu SINE Alu 235 325 0 2668 141 11 9 chr1 184753043 184753476 -97440188 + L1PA15 LINE L1 5729 6162 -3 218 103 0 26 chr1 184753806 184753845 -97439819 + (TA)n Simple_repeat Simple_repeat 1 38 0 217 293 17 0 chr1 184754073 184754131 -97439533 + L2 LINE L2 3213 3271 -1 259 204 0 19 chr1 184754698 184754752 -97438912 - MIR SINE MIR -106 156 104 220 347 65 32 chr1 184755509 184755633 -97438031 + L2 LINE L2 2581 2708 -606 189 346 44 59 chr1 184755673 184755732 -97437932 + MIR SINE MIR 89 147 -115 2234 97 0 0 chr1 184755732 184756062 -97437602 + AluSx SINE Alu 1 330 0 189 346 44 59 chr1 184756062 184756135 -97437529 + MIR SINE MIR 147 222 -40 207 260 271 0 chr1 184757196 184757292 -97436372 - L2 LINE L2 -14 3299 3178 734 224 29 54 chr1 184757667 184757872 -97435792 + L2 LINE L2 2056 2255 -1059 2392 215 81 14 chr1 184757908 184758651 -97435013 - L1MD2 LINE L1 -368 5991 5156 411 290 30 10 chr1 184759050 184759150 -97434514 + MIR SINE MIR 45 146 -62 1753 165 0 3 chr1 184759543 184759834 -97433830 - AluSx SINE Alu -22 290 1 7792 31 4 0 chr1 184759843 184761582 -97432082 - L1PA3 LINE L1 0 6155 4444 8901 27 1 0 chr1 184761582 184762632 -97431032 + L1PA3 LINE L1 3386 4436 -1710 321 298 32 16 chr1 184763240 184763364 -97430300 - L2 LINE L2 -3 3310 3185 225 320 180 12 chr1 184763839 184764011 -97429653 - MIR3 SINE MIR -5 203 3 291 28 0 0 chr1 184764863 184764899 -97428765 + (TG)n Simple_repeat Simple_repeat 2 37 0 1539 171 13 37 chr1 184764903 184765201 -97428463 - AluJo SINE Alu -21 291 1 2239 79 0 43 chr1 184765384 184765689 -97427975 - AluY SINE Alu -19 292 1 971 176 5 24 chr1 184766692 184766902 -97426762 + L1PB3 LINE L1 5947 6152 -2 582 301 19 10 chr1 184766945 184767151 -97426513 + L2 LINE L2 3103 3310 -3 21 0 0 0 chr1 184768113 184768134 -97425530 + AT_rich Low_complexity Low_complexity 1 21 0 6125 7 0 0 chr1 184768390 184769075 -97424589 - L1HS LINE L1 0 6155 5471 624 280 55 25 chr1 184770454 184770654 -97423010 + MIR SINE MIR 1 206 -56 451 343 142 49 chr1 184770733 184771745 -97421919 + L2 LINE L2 616 1532 -1782 186 103 0 0 chr1 184771745 184771774 -97421890 + (TAA)n Simple_repeat Simple_repeat 2 30 0 451 343 142 49 chr1 184771774 184772674 -97420990 + L2 LINE L2 1532 2707 -607 190 315 62 138 chr1 184772758 184773114 -97420550 + L2 LINE L2 2941 3269 -3 268 260 0 0 chr1 184773219 184773269 -97420395 - MER91B DNA MER1_type -14 126 77 1410 190 52 78 chr1 184773271 184773655 -97420009 + MLT1A2 LTR MaLR 1 374 0 255 262 16 0 chr1 184773805 184773866 -97419798 - MER91B DNA MER1_type -127 63 2 274 317 37 0 chr1 184774561 184774643 -97419021 - MIR3 SINE MIR -36 172 88 963 219 43 0 chr1 184774647 184774857 -97418807 + MER74B LTR ERVL 60 278 -344 521 169 24 0 chr1 184775314 184775397 -97418267 - AluJb SINE Alu -19 293 209 1655 187 6 25 chr1 184775538 184775853 -97417811 + AluJo SINE Alu 1 309 -3 815 232 116 26 chr1 184776246 184776548 -97417116 - L1MB7 LINE L1 0 6184 5856 1427 213 68 28 chr1 184776557 184776910 -97416754 + MLT1A2 LTR MaLR 1 367 -7 1903 177 19 3 chr1 184776910 184777272 -97416392 - L1ME1 LINE L1 -317 6660 6293 202 70 0 47 chr1 184777289 184777332 -97416332 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 189 74 0 0 chr1 184777330 184777357 -97416307 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 283 196 0 0 chr1 184777357 184777408 -97416256 - Alu SINE Alu -5 295 245 2386 223 50 29 chr1 184777408 184778203 -97415461 - L1ME1 LINE L1 -698 6297 5496 1806 215 38 29 chr1 184778234 184778788 -97414876 - L1ME1 LINE L1 -3196 3761 3203 1040 252 58 52 chr1 184778788 184779312 -97414352 - L1ME1 LINE L1 -5189 1758 1239 2087 229 115 70 chr1 184779367 184780062 -97413602 + MER21B LTR ERV1 13 738 -125 1816 163 3 0 chr1 184780153 184780442 -97413222 + AluJb SINE Alu 11 300 -12 192 158 0 0 chr1 184781103 184781141 -97412523 + GA-rich Low_complexity Low_complexity 3 40 0 3351 149 93 40 chr1 184781170 184781311 -97412353 + MER4B-int LTR ERV1 6045 6177 -581 2283 93 17 0 chr1 184781311 184781602 -97412062 - AluSp SINE Alu -17 296 1 3351 149 93 40 chr1 184781602 184782137 -97411527 + MER4B-int LTR ERV1 6177 6757 -1 3893 105 21 34 chr1 184782138 184782756 -97410908 + MER4B LTR ERV1 1 610 0 1363 217 75 10 chr1 184782756 184783051 -97410613 + LTR32 LTR ERVL 153 466 -5 7540 217 44 17 chr1 184783057 184785805 -97407859 + L1MA5 LINE L1 1814 4680 -2168 1629 168 36 31 chr1 184785801 184786189 -97407475 + L1MA5 LINE L1 5064 5453 -1395 * 2415 140 28 33 chr1 184786189 184786235 -97407429 - MSTB LTR MaLR 0 426 381 2107 133 27 35 chr1 184786235 184786602 -97407062 + THE1B LTR MaLR 1 364 0 2415 140 28 33 chr1 184786602 184786983 -97406681 - MSTB LTR MaLR -45 381 1 2815 172 29 32 chr1 184786985 184787733 -97405931 + L1MA5 LINE L1 5451 6190 -743 1541 203 10 22 chr1 184787736 184788047 -97405617 + AluJo SINE Alu 2 308 -4 3881 139 11 28 chr1 184788047 184788745 -97404919 + L1MA5 LINE L1 6294 6996 -6 2123 256 43 28 chr1 184788804 184789379 -97404285 + MLT1E LTR MaLR 10 593 0 244 195 0 46 chr1 184790034 184790121 -97403543 + CT-rich Low_complexity Low_complexity 6 88 0 1941 141 93 3 chr1 184790177 184790511 -97403153 - THE1B LTR MaLR 0 364 1 1798 120 85 0 chr1 184790581 184790886 -97402778 + AluSx SINE Alu 1 327 0 24 0 0 0 chr1 184790886 184790910 -97402754 + AT_rich Low_complexity Low_complexity 1 24 0 1673 146 185 14 chr1 184790911 184791084 -97402580 + MSTA LTR MaLR 5 147 -281 180 0 0 0 chr1 184791084 184791104 -97402560 + (TC)n Simple_repeat Simple_repeat 1 20 0 1673 146 185 14 chr1 184791104 184791292 -97402372 + MSTA LTR MaLR 147 428 0 258 81 0 0 chr1 184791307 184791344 -97402320 + (CA)n Simple_repeat Simple_repeat 1 37 0 1415 159 98 61 chr1 184791363 184791690 -97401974 - MER2 DNA MER2_type 0 345 7 269 227 16 47 chr1 184791784 184791912 -97401752 + T-rich Low_complexity Low_complexity 5 128 0 369 328 227 26 chr1 184793731 184794885 -97398779 + L2 LINE L2 1889 3272 0 264 349 74 7 chr1 184794879 184795028 -97398636 + MIR3 SINE MIR 49 207 -1 * 2087 201 56 71 chr1 184795070 184795691 -97397973 + LTR9 LTR ERV1 1 612 0 3670 152 38 36 chr1 184796546 184797258 -97396406 + LTR8A LTR ERV1 7 719 -8 4623 97 3 5 chr1 184797312 184797952 -97395712 - L1PA11 LINE L1 -3 6171 5533 1155 174 5 0 chr1 184798237 184798456 -97395208 + AluY SINE Alu 87 306 -5 689 161 27 40 chr1 184798485 184798634 -97395030 + FRAM SINE Alu 1 40 0 394 327 58 16 chr1 184798637 184798894 -97394770 + L1M4 LINE L1 2204 2471 -3675 198 71 0 0 chr1 184798993 184799021 -97394643 + (CA)n Simple_repeat Simple_repeat 2 29 0 445 297 78 44 chr1 184799027 184799320 -97394344 + L1M4 LINE L1 2638 2940 -3206 795 306 104 9 chr1 184799466 184800045 -97393619 - L1M4 LINE L1 -1495 4651 4018 1570 190 0 30 chr1 184800077 184800377 -97393287 - AluJb SINE Alu -11 301 11 457 303 202 18 chr1 184800592 184800810 -97392854 + MIR SINE MIR 2 259 -3 277 356 23 17 chr1 184801189 184801366 -97392298 - L2 LINE L2 -1420 1894 1717 273 287 46 0 chr1 184802216 184802303 -97391361 + MIR3 SINE MIR 118 208 0 288 324 64 75 chr1 184802513 184802686 -97390978 - MER91A DNA MER1_type -25 171 1 25 0 0 0 chr1 184803112 184803137 -97390527 + AT_rich Low_complexity Low_complexity 1 25 0 393 301 62 81 chr1 184803281 184803750 -97389914 + MLT1J LTR MaLR 3 462 -49 735 316 243 25 chr1 184803941 184804806 -97388858 + L2 LINE L2 782 1834 -1480 248 242 42 21 chr1 184805210 184805305 -97388359 - L1ME LINE L1 -285 5885 5789 760 268 75 9 chr1 184805333 184805561 -97388103 + MIR SINE MIR 4 246 -16 350 284 12 49 chr1 184805576 184805738 -97387926 - LTR33 LTR ERVL -22 499 344 714 161 0 0 chr1 184805871 184805989 -97387675 + AluJb SINE Alu 1 118 -194 45 0 0 0 chr1 184805992 184806037 -97387627 + AT_rich Low_complexity Low_complexity 1 45 0 356 184 58 23 chr1 184806172 184806259 -97387405 + MER103 DNA DNA 10 99 -67 1763 147 3 0 chr1 184807049 184807342 -97386322 + L1PA13 LINE L1 5870 6163 0 350 234 32 58 chr1 184807775 184807929 -97385735 + MLT1L LTR MaLR 440 589 -26 1228 184 68 42 chr1 184808283 184808668 -97384996 + Charlie4a DNA MER1_type 27 421 -87 212 132 0 75 chr1 184808668 184808721 -97384943 + (TAAAAA)n Simple_repeat Simple_repeat 4 52 0 352 207 85 0 chr1 184808721 184808803 -97384861 + Charlie4a DNA MER1_type 414 502 -6 1177 209 103 9 chr1 184809199 184809530 -97384134 - L1ME3A LINE L1 -6 6164 5803 753 202 17 39 chr1 184809544 184809722 -97383942 + Charlie1 DNA MER1_type 12 185 -2576 499 194 14 69 chr1 184809724 184809868 -97383796 + Charlie1 DNA MER1_type 2622 2757 -4 1710 225 69 6 chr1 184809877 184810370 -97383294 - L1ME3A LINE L1 -367 5795 5272 500 296 95 41 chr1 184810423 184810700 -97382964 - L1MC4 LINE L1 -135 7673 7360 1849 172 154 29 chr1 184810700 184811147 -97382517 + MLT1D LTR MaLR 1 503 -2 500 296 95 41 chr1 184811147 184811179 -97382485 - L1MC4 LINE L1 -448 7360 7331 2151 309 78 52 chr1 184811257 184811306 -97382358 - HERVL LTR ERVL -2937 2717 2671 1721 156 43 0 chr1 184811306 184811577 -97382087 + AluSx SINE Alu 3 286 -22 315 0 0 0 chr1 184811577 184811612 -97382052 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 2151 309 78 52 chr1 184811616 184812210 -97381454 - HERVL LTR ERVL -2983 2671 2094 2172 133 3 15 chr1 184812210 184812548 -97381116 + MER1B DNA MER1_type 1 334 -3 2151 309 78 52 chr1 184812548 184812936 -97380728 - HERVL LTR ERVL -3560 2094 1718 1898 123 63 0 chr1 184812936 184813233 -97380431 - AluSx SINE Alu 0 314 1 2151 309 78 52 chr1 184813233 184813716 -97379948 - HERVL LTR ERVL -3936 1718 1160 281 338 0 29 chr1 184813852 184813988 -97379676 - HERVL LTR ERVL -4757 1007 876 6311 124 42 6 chr1 184814007 184815248 -97378416 - L1MA6 LINE L1 0 6300 5023 2352 88 3 0 chr1 184816012 184816308 -97377356 - AluSp SINE Alu -16 297 1 1099 255 71 6 chr1 184816308 184816630 -97377034 - LTR50 LTR ERVL -24 771 429 887 272 143 59 chr1 184817082 184817308 -97376356 + L2 LINE L2 2555 2761 -552 1685 160 70 17 chr1 184817308 184817664 -97376000 - THE1C LTR MaLR 0 375 1 10494 114 28 7 chr1 184817664 184819212 -97374452 - THE1C-int LTR MaLR 0 1580 1 1850 134 73 25 chr1 184819212 184819570 -97374094 - THE1C LTR MaLR 0 375 1 887 272 143 59 chr1 184819570 184820042 -97373622 + L2 LINE L2 2760 3311 -2 24 32 0 0 chr1 184821265 184821296 -97372368 + AT_rich Low_complexity Low_complexity 1 31 0 273 279 19 48 chr1 184821341 184821445 -97372219 - MIR SINE MIR -52 210 110 23 0 0 0 chr1 184821836 184821859 -97371805 + AT_rich Low_complexity Low_complexity 1 23 0 286 331 29 66 chr1 184822040 184822176 -97371488 + MIR3 SINE MIR 5 135 -73 1126 252 141 46 chr1 184822966 184823513 -97370151 - L1MC4 LINE L1 -233 7809 7211 1333 188 8 136 chr1 184823610 184824126 -97369538 - LTR7 LTR ERV1 0 450 1 741 287 142 15 chr1 184824131 184824766 -97368898 - L1M4 LINE L1 -1952 4194 3478 623 222 186 66 chr1 184824773 184825225 -97368439 - MLT1H1 LTR MaLR -7 535 1 626 269 35 29 chr1 184826429 184826600 -97367064 - MER91B DNA MER1_type -2 188 17 391 220 123 64 chr1 184826674 184826771 -97366893 + L1ME2 LINE L1 5258 5348 -828 2194 99 3 3 chr1 184826771 184827063 -97366601 + AluSc SINE Alu 1 292 -17 391 220 123 64 chr1 184827063 184827152 -97366512 + L1ME2 LINE L1 5348 5455 -721 447 257 0 21 chr1 184827258 184827402 -97366262 + L1ME2 LINE L1 5417 5557 -607 1871 155 16 10 chr1 184827639 184827943 -97365721 + AluJb SINE Alu 4 309 -3 2014 113 3 42 chr1 184829429 184829739 -97363925 + AluSx SINE Alu 1 298 -14 1422 229 37 67 chr1 184830246 184830756 -97362908 + L1ME2 LINE L1 5548 6042 -122 1620 188 18 0 chr1 184830780 184831052 -97362612 - AluJo SINE Alu -35 277 1 321 243 0 0 chr1 184831055 184831125 -97362539 + L1ME2 LINE L1 6036 6105 -59 1069 259 99 29 chr1 184831149 184831562 -97362102 + L2 LINE L2 2871 3312 -1 23 33 0 0 chr1 184832002 184832032 -97361632 + AT_rich Low_complexity Low_complexity 1 30 0 196 359 184 0 chr1 184832576 184832679 -97360985 - L2 LINE L2 -10 3262 3141 197 366 82 29 chr1 184832851 184833157 -97360507 - L2 LINE L2 -352 2962 2641 13264 118 26 15 chr1 184833363 184834457 -97359207 - Tigger1 DNA MER2_type -298 2120 1040 2330 55 41 3 chr1 184834457 184834747 -97358917 + AluY SINE Alu 1 301 -10 13264 118 26 15 chr1 184834747 184834897 -97358767 - Tigger1 DNA MER2_type -1378 1040 893 2115 131 30 24 chr1 184834897 184835270 -97358394 - THE1C LTR MaLR 0 375 1 13264 118 26 15 chr1 184835270 184836117 -97357547 - Tigger1 DNA MER2_type -1525 893 5 2212 117 41 19 chr1 184836153 184836520 -97357144 + THE1C LTR MaLR 1 375 0 442 333 62 44 chr1 184838020 184838152 -97355512 + MIR SINE MIR 3 142 -120 315 0 0 0 chr1 184838152 184838187 -97355477 + (TG)n Simple_repeat Simple_repeat 2 36 0 442 333 62 44 chr1 184838187 184838279 -97355385 + MIR SINE MIR 142 231 -31 211 28 56 0 chr1 184838682 184838718 -97354946 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1915 193 25 3 chr1 184838794 184839151 -97354513 + MLT1A1 LTR MaLR 1 365 0 564 170 36 0 chr1 184839190 184839302 -97354362 + L1PB2 LINE L1 6033 6148 -3 828 154 0 0 chr1 184839427 184839550 -97354114 + FLAM_C SINE Alu 1 123 -20 551 91 114 0 chr1 184840661 184840749 -97352915 + FRAM SINE Alu 62 159 -17 185 318 111 0 chr1 184840779 184840842 -97352822 + L3 LINE CR1 1027 1096 -481 239 286 0 0 chr1 184841042 184841098 -97352566 - L2 LINE L2 -11 3302 3247 499 304 29 29 chr1 184841201 184841408 -97352256 + L2 LINE L2 2247 2453 -861 185 352 88 33 chr1 184841414 184841505 -97352159 - L2 LINE L2 -18 3295 3200 457 316 116 28 chr1 184841519 184841873 -97351791 + L2 LINE L2 2460 2844 -470 413 260 7 84 chr1 184842000 184842154 -97351510 + L2 LINE L2 3167 3308 -5 185 297 238 11 chr1 184842671 184842940 -97350724 - L2 LINE L2 -1035 2279 1950 200 243 10 117 chr1 184842997 184843100 -97350564 - L2 LINE L2 -1837 1477 1386 21 0 0 0 chr1 184844141 184844162 -97349502 + AT_rich Low_complexity Low_complexity 1 21 0 209 270 95 0 chr1 184844360 184844434 -97349230 - MIR SINE MIR -11 251 171 * 772 302 20 12 chr1 184844428 184844683 -97348981 - MIR SINE MIR 0 262 6 521 253 80 12 chr1 184845356 184845518 -97348146 + MIR3 SINE MIR 13 185 -23 317 295 145 48 chr1 184845525 184845752 -97347912 + MIR SINE MIR 14 262 0 1196 291 94 66 chr1 184847451 184847592 -97346072 + L3 LINE CR1 618 754 -823 1826 146 14 17 chr1 184847592 184847886 -97345778 + AluJb SINE Alu 3 295 -17 1196 291 94 66 chr1 184847886 184848667 -97344997 + L3 LINE CR1 754 1566 -11 1918 144 14 0 chr1 184849045 184849330 -97344334 - AluJb SINE Alu -2 310 22 990 197 58 10 chr1 184849332 184849540 -97344124 - MER20 DNA MER1_type 0 219 2 29 28 0 0 chr1 184850582 184850618 -97343046 + AT_rich Low_complexity Low_complexity 1 36 0 351 0 0 0 chr1 184851260 184851299 -97342365 + (CA)n Simple_repeat Simple_repeat 2 40 0 1821 149 24 0 chr1 184853545 184853833 -97339831 - MSTA LTR MaLR 0 428 134 3452 171 58 10 chr1 184853834 184854530 -97339134 + L1MC1 LINE L1 5604 6332 -1 6913 224 111 42 chr1 184854530 184856560 -97337104 - L1MEc LINE L1 -1291 4924 3035 1883 230 40 40 chr1 184856560 184857065 -97336599 - MLT1D LTR MaLR 0 505 1 6913 224 111 42 chr1 184857065 184857990 -97335674 - L1MEc LINE L1 -3180 3035 1776 2715 163 12 0 chr1 184857990 184858470 -97335194 - L1PB4 LINE L1 -13 6143 5658 6913 224 111 42 chr1 184858470 184858644 -97335020 - L1MEc LINE L1 -4439 1776 1615 1553 209 0 11 chr1 184858650 184858928 -97334736 + AluJo SINE Alu 1 275 -37 2265 96 0 0 chr1 184859095 184859408 -97334256 - AluSc SINE Alu 0 313 1 283 300 56 0 chr1 184859408 184859498 -97334166 - MER2 DNA MER2_type -248 97 3 1308 223 91 89 chr1 184859500 184860333 -97333331 - L1MEc LINE L1 -4789 1607 773 931 339 38 8 chr1 184860333 184860705 -97332959 - L1MEc LINE L1 -5970 426 44 267 319 90 90 chr1 184861745 184862033 -97331631 + L2 LINE L2 2985 3272 0 226 385 78 14 chr1 184863171 184863389 -97330275 - L2 LINE L2 -1702 1612 1381 2119 217 72 22 chr1 184863885 184864388 -97329276 + MER119 DNA MER1_type 2 529 -54 482 260 123 89 chr1 184864714 184865359 -97328305 - L1ME4a LINE L1 -15 6106 5431 2082 135 0 0 chr1 184865359 184865663 -97328001 - AluSg SINE Alu -6 304 1 482 260 123 89 chr1 184865663 184865760 -97327904 - L1ME4a LINE L1 -690 5431 5339 2046 104 3 14 chr1 184865765 184866085 -97327579 - AluSq SINE Alu 0 317 1 180 111 0 0 chr1 184866817 184866844 -97326820 + (TA)n Simple_repeat Simple_repeat 2 28 0 319 207 115 0 chr1 184867180 184867267 -97326397 - L1MC4 LINE L1 -2 8040 7944 227 273 15 15 chr1 184867299 184867365 -97326299 - L2 LINE L2 -5 3267 3202 509 177 10 0 chr1 184868392 184868488 -97325176 + L1MC1 LINE L1 6231 6327 -6 226 362 8 0 chr1 184868988 184869115 -97324549 + L1P LINE L1 4883 5010 -1136 1851 175 21 148 chr1 184870239 184870851 -97322813 - Tigger7 DNA MER2_type 0 2487 1799 1426 205 36 7 chr1 184870851 184871129 -97322535 + AluJo SINE Alu 1 286 -26 1851 175 21 148 chr1 184871129 184871328 -97322336 - Tigger7 DNA MER2_type -688 1799 1 357 245 64 0 chr1 184872815 184872909 -97320755 - L1ME LINE L1 -502 5619 5520 24 0 0 0 chr1 184873667 184873691 -97319973 + AT_rich Low_complexity Low_complexity 1 24 0 221 159 0 87 chr1 184874060 184874129 -97319535 + GA-rich Low_complexity Low_complexity 3 65 0 2561 37 0 3 chr1 184874298 184874597 -97319067 + AluY SINE Alu 1 298 -13 193 327 0 0 chr1 184874878 184874930 -97318734 + L2 LINE L2 3254 3305 -8 188 262 33 16 chr1 184875008 184875069 -97318595 + MER5A DNA MER1_type 80 141 -48 1774 288 144 35 chr1 184875092 184876109 -97317555 - L3 LINE CR1 -109 1468 342 21 0 0 0 chr1 184876258 184876279 -97317385 + AT_rich Low_complexity Low_complexity 1 21 0 211 225 0 0 chr1 184876304 184876344 -97317320 + T-rich Low_complexity Low_complexity 2 41 0 202 400 33 0 chr1 184876747 184876837 -97316827 - L2 LINE L2 -9 3263 3171 2508 48 0 0 chr1 184876863 184877158 -97316506 + AluY SINE Alu 1 295 -16 620 208 8 0 chr1 184877304 184877429 -97316235 - MER3 DNA MER1_type -1 208 83 1017 157 24 43 chr1 184877652 184877862 -97315802 + MER3 DNA MER1_type 4 209 0 24 77 0 0 chr1 184879067 184879119 -97314545 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr1 184879914 184879939 -97313725 + AT_rich Low_complexity Low_complexity 1 25 0 211 293 173 45 chr1 184880081 184880214 -97313450 - MIR SINE MIR -15 247 98 383 200 27 0 chr1 184880361 184880436 -97313228 + MIR SINE MIR 186 262 0 499 145 48 32 chr1 184881257 184881381 -97312283 - Charlie4 DNA MER1_type -36 1925 1800 2126 196 66 7 chr1 184881695 184882149 -97311515 + MER119 DNA MER1_type 32 512 -71 214 309 137 46 chr1 184882227 184882402 -97311262 + L2 LINE L2 2828 3018 -254 1925 124 0 7 chr1 184882426 184882709 -97310955 - AluSx SINE Alu -30 282 2 223 203 0 17 chr1 184882737 184882796 -97310868 + T-rich Low_complexity Low_complexity 3 60 0 207 367 138 0 chr1 184882808 184882917 -97310747 + L2 LINE L2 3145 3268 -4 1285 92 0 0 chr1 184883874 184884037 -97309627 + AluY SINE Alu 1 163 -148 405 164 0 0 chr1 184884037 184884110 -97309554 + (TA)n Simple_repeat Simple_repeat 1 73 0 280 281 206 38 chr1 184884493 184884653 -97309011 - MER5A DNA MER1_type -2 187 1 2178 158 89 5 chr1 184884725 184885142 -97308522 - Tigger2 DNA MER2_type 0 2718 2267 346 232 0 0 chr1 184885126 184885195 -97308469 - Tigger2 DNA MER2_type -2649 69 1 * 869 180 81 6 chr1 184885659 184885831 -97307833 - MER5A DNA MER1_type -4 185 1 557 256 154 0 chr1 184885885 184886041 -97307623 - MER5A DNA MER1_type 0 189 10 206 328 0 16 chr1 184886120 184886184 -97307480 + MIR SINE MIR 200 262 0 555 340 24 0 chr1 184886197 184886403 -97307261 + MIR SINE MIR 7 217 -45 438 222 0 0 chr1 184886951 184887032 -97306632 - MER81 DNA DNA -32 82 2 1821 183 30 108 chr1 184887317 184887916 -97305748 - MLT1F1 LTR MaLR -9 558 1 465 216 72 0 chr1 184889650 184889747 -97303917 + L2 LINE L2 3208 3311 -2 724 250 90 59 chr1 184889798 184890394 -97303270 - L1ME LINE L1 -343 5821 5188 255 264 154 0 chr1 184890497 184890588 -97303076 + L2 LINE L2 3150 3254 -18 1727 170 20 0 chr1 184890589 184890889 -97302775 - AluJo SINE Alu -6 306 1 1067 234 9 0 chr1 184890960 184891174 -97302490 + MER58A DNA MER1_type 1 216 -8 2169 139 27 38 chr1 184941420 184941788 -97251876 + THE1B LTR MaLR 1 364 0 11474 85 4 6 chr1 184941788 184943109 -97250555 + THE1B-int LTR MaLR 1 1321 -259 8776 46 4 2 chr1 184943109 184944176 -97249488 + MER11C LTR ERVK 1 1069 -2 11474 85 4 6 chr1 184944176 184944436 -97249228 + THE1B-int LTR MaLR 1321 1580 0 1995 154 36 22 chr1 184944436 184944793 -97248871 + THE1B LTR MaLR 1 362 -2 283 309 15 70 chr1 184944868 184945069 -97248595 + L2 LINE L2 2193 2382 -932 514 325 118 57 chr1 184945151 184945778 -97247886 - L2 LINE L2 -786 2528 1864 249 222 0 0 chr1 184945786 184945840 -97247824 + (TA)n Simple_repeat Simple_repeat 2 55 0 195 42 0 0 chr1 184945927 184945951 -97247713 + (CA)n Simple_repeat Simple_repeat 2 25 0 402 311 45 54 chr1 184946018 184946356 -97247308 - L1MEc LINE L1 -3755 2460 2127 1781 230 38 38 chr1 184946400 184946905 -97246759 - MLT1D LTR MaLR 0 505 1 2134 120 19 13 chr1 184947112 184947421 -97246243 - AluSx SINE Alu -1 311 1 417 306 104 22 chr1 184947559 184947915 -97245749 - HAL1b LINE L1 -733 615 231 951 249 111 9 chr1 184948533 184949081 -97244583 - L1MEc LINE L1 -4796 1419 862 1017 173 0 0 chr1 184949106 184949262 -97244402 + AluJb SINE Alu 134 289 -23 826 310 47 45 chr1 184949351 184949925 -97243739 - L1MEc LINE L1 -5708 688 114 1709 263 107 12 chr1 184950656 184951226 -97242438 + MLT1E3 LTR MaLR 1 624 0 180 0 0 0 chr1 184951450 184951470 -97242194 + (TA)n Simple_repeat Simple_repeat 2 21 0 6924 16 0 0 chr1 184953026 184953812 -97239852 + L1PA3 LINE L1 5367 6152 -3 537 120 27 0 chr1 184954094 184954203 -97239461 - AluSg/x SINE Alu 0 314 204 23 0 0 0 chr1 184954482 184954505 -97239159 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 184954584 184954605 -97239059 + AT_rich Low_complexity Low_complexity 1 21 0 1159 204 21 18 chr1 184954766 184955050 -97238614 + L1 LINE L1 2 286 -6744 2590 243 68 56 chr1 184955050 184956290 -97237374 + L1 LINE L1 1182 2110 -4996 417 86 0 0 chr1 184956290 184956348 -97237316 + (TATG)n Simple_repeat Simple_repeat 2 59 0 2590 243 68 56 chr1 184956348 184957533 -97236131 + L1 LINE L1 2110 3280 -3826 1327 229 46 5 chr1 184957534 184957967 -97235697 + L1 LINE L1 3667 4117 -2989 * 4100 161 63 2 chr1 184957936 184958827 -97234837 + L1 LINE L1 5438 6382 -743 24 0 0 0 chr1 184958971 184958995 -97234669 + AT_rich Low_complexity Low_complexity 1 24 0 427 298 50 53 chr1 184959002 184959182 -97234482 - HAL1 LINE L1 -1385 1122 942 2181 257 21 35 chr1 184959182 184959813 -97233851 + MLT1E3 LTR MaLR 3 624 0 427 298 50 53 chr1 184959813 184959974 -97233690 - HAL1 LINE L1 -1565 942 782 344 382 19 24 chr1 184960022 184960234 -97233430 - HAL1 LINE L1 -1866 641 431 262 287 56 77 chr1 184960385 184960580 -97233084 - HAL1 LINE L1 -2315 192 2 21 0 0 0 chr1 184960587 184960608 -97233056 + AT_rich Low_complexity Low_complexity 1 21 0 385 273 93 16 chr1 184960762 184960956 -97232708 - L1M4 LINE L1 -2427 3719 3511 4386 127 43 38 chr1 184960968 184962772 -97230892 - SVA Other Other -518 1170 1 1309 280 59 36 chr1 184962900 184964003 -97229661 - L1M4 LINE L1 -2667 3479 2352 2505 192 24 35 chr1 184964446 184964993 -97228671 + MER67A LTR ERV1 1 541 -2 758 298 72 39 chr1 184965108 184965497 -97228167 + L2 LINE L2 1814 2215 -1099 796 311 26 43 chr1 184965498 184965848 -97227816 + L2 LINE L2 2442 2785 -529 419 263 5 81 chr1 184965927 184966125 -97227539 - MLT1J LTR MaLR -71 440 258 225 222 28 28 chr1 184966326 184966398 -97227266 - MLT1L LTR MaLR -543 72 1 198 71 0 0 chr1 184969056 184969084 -97224580 + (TG)n Simple_repeat Simple_repeat 2 29 0 398 292 125 33 chr1 184969760 184970065 -97223599 + MARNA DNA Mariner 136 468 -118 349 353 113 13 chr1 184971022 184971260 -97222404 + L3 LINE CR1 188 449 -1128 257 292 223 15 chr1 184971413 184971615 -97222049 + L3 LINE CR1 426 669 -908 561 254 0 0 chr1 184972415 184972545 -97221119 + MER94 DNA DNA 5 134 0 548 145 0 0 chr1 184972679 184972762 -97220902 + 5S rRNA rRNA 7 89 -32 625 321 21 53 chr1 184973334 184973711 -97219953 + MLT1J LTR MaLR 3 367 -144 199 219 0 0 chr1 184974922 184974963 -97218701 + L2 LINE L2 3231 3271 -1 21517 147 20 27 chr1 184975140 184978658 -97215006 + L1MA3 LINE L1 17 3557 -4167 2109 129 3 13 chr1 184978658 184978968 -97214696 + AluSq SINE Alu 7 313 0 21517 147 20 27 chr1 184978968 184979929 -97213735 + L1MA3 LINE L1 3557 4523 -3201 1631 174 80 3 chr1 184979929 184980217 -97213447 + AluSx SINE Alu 3 312 0 21517 147 20 27 chr1 184980217 184980344 -97213320 + L1MA3 LINE L1 4523 4649 -3075 1541 59 5 27 chr1 184980344 184980564 -97213100 - L1PA4 LINE L1 0 6155 5941 21517 147 20 27 chr1 184980564 184982643 -97211021 + L1MA3 LINE L1 4649 6741 -983 1750 165 26 16 chr1 184982643 184982952 -97210712 + AluSx SINE Alu 1 312 0 21517 147 20 27 chr1 184982952 184983007 -97210657 + L1MA3 LINE L1 6741 6795 -929 2399 68 7 0 chr1 184983007 184983301 -97210363 - AluY SINE Alu -15 296 1 21517 147 20 27 chr1 184983301 184984306 -97209358 + L1MA3 LINE L1 6795 7723 -1 1832 141 171 8 chr1 184984483 184984851 -97208813 + MSTA LTR MaLR 1 428 0 189 194 60 90 chr1 184987851 184987918 -97205746 + L3 LINE CR1 1509 1573 -4 264 30 0 0 chr1 184988088 184988121 -97205543 + (TG)n Simple_repeat Simple_repeat 2 34 0 3863 174 44 30 chr1 184988539 184989612 -97204052 - L1MB8 LINE L1 -1 6177 5094 2093 127 14 109 chr1 184989922 184990472 -97203192 - L1MA5 LINE L1 -1454 4692 4195 5593 148 38 11 chr1 184990472 184991080 -97202584 + L1MA5 LINE L1 4678 5268 -1032 315 0 0 0 chr1 184991080 184991115 -97202549 + (CA)n Simple_repeat Simple_repeat 2 36 0 5593 148 38 11 chr1 184991115 184992080 -97201584 + L1MA5 LINE L1 5268 6278 -22 24 0 0 0 chr1 184992083 184992107 -97201557 + AT_rich Low_complexity Low_complexity 1 24 0 367 282 65 18 chr1 184992304 184992474 -97201190 + L1M3e LINE L1 1592 1769 -5261 255 294 12 0 chr1 184992475 184992560 -97201104 + CT-rich Low_complexity Low_complexity 3 88 0 1195 154 20 16 chr1 184993728 184993974 -97199690 - L1MA9 LINE L1 -30 6282 6036 1283 178 30 9 chr1 184993988 184994219 -97199445 - MER46A DNA MER2_type 0 236 1 705 184 0 0 chr1 184994219 184994355 -97199309 + L1MA9 LINE L1 5784 5919 -393 189 341 68 11 chr1 184996652 184996740 -97196924 - L2 LINE L2 -43 3229 3137 786 255 51 43 chr1 184996760 184997015 -97196649 - MIR SINE MIR 0 262 6 201 352 93 63 chr1 184997018 184997288 -97196376 - L2 LINE L2 -185 3087 2810 458 306 24 0 chr1 184997548 184997672 -97195992 - L2 LINE L2 -3 3269 3143 834 259 14 9 chr1 184997762 184997982 -97195682 + MIR SINE MIR 2 222 -40 180 0 0 0 chr1 184998628 184998648 -97195016 + (T)n Simple_repeat Simple_repeat 1 20 0 234 333 37 0 chr1 184998928 184999009 -97194655 - L2 LINE L2 -236 3036 2953 2396 217 34 97 chr1 184999018 184999783 -97193881 - MER21B LTR ERV1 -146 717 1 396 242 81 0 chr1 184999890 184999989 -97193675 - MIR SINE MIR 0 262 156 622 203 47 8 chr1 185000030 185000158 -97193506 + MIR SINE MIR 32 164 -98 675 251 10 44 chr1 185001013 185001216 -97192448 + MIR SINE MIR 20 215 -47 202 238 0 0 chr1 185001246 185001288 -97192376 - L2 LINE L2 -1 3312 3271 227 317 0 0 chr1 185001377 185001437 -97192227 - L3b LINE CR1 -69 1514 1455 206 314 128 12 chr1 185001562 185001648 -97192016 - MIR3 SINE MIR -19 189 94 1793 88 8 19 chr1 185002132 185002185 -97191479 + L1PA10 LINE L1 5909 5961 -207 1669 161 78 12 chr1 185002185 185002507 -97191157 + MER61A LTR ERV1 1 343 0 1793 88 8 19 chr1 185002507 185002716 -97190948 + L1PA10 LINE L1 5961 6168 0 425 330 149 0 chr1 185002946 185003167 -97190497 + MIR SINE MIR 9 262 0 2197 99 72 9 chr1 185004107 185004441 -97189223 - THE1A LTR MaLR 0 355 1 1653 161 0 0 chr1 185004630 185004890 -97188774 - AluJb SINE Alu -52 260 1 202 318 16 0 chr1 185004904 185004967 -97188697 - L2 LINE L2 -700 2614 2551 202 248 83 76 chr1 185005055 185005200 -97188464 - L2 LINE L2 -940 2374 2229 273 221 114 69 chr1 185005287 185005418 -97188246 - MIR SINE MIR -1 261 125 359 338 44 44 chr1 185005519 185005723 -97187941 + MIR SINE MIR 45 248 -14 417 298 158 38 chr1 185006254 185006546 -97187118 + L1MEd LINE L1 698 1024 -5095 22 0 0 0 chr1 185006560 185006582 -97187082 + AT_rich Low_complexity Low_complexity 1 22 0 3450 114 49 30 chr1 185006584 185006875 -97186789 - Tigger3(Golem) DNA MER2_type 0 3028 2744 2367 85 3 0 chr1 185006875 185007182 -97186482 - AluSp SINE Alu -4 309 2 3450 114 49 30 chr1 185007182 185007523 -97186141 - Tigger3(Golem) DNA MER2_type -284 2744 2384 4995 62 11 6 chr1 185007523 185008518 -97185146 - SVA Other Other -954 1386 62 365 327 60 7 chr1 185008823 185008973 -97184691 - L1MEc LINE L1 -4892 1313 1156 26 30 0 0 chr1 185009094 185009127 -97184537 + AT_rich Low_complexity Low_complexity 1 33 0 252 0 0 0 chr1 185009427 185009455 -97184209 + (T)n Simple_repeat Simple_repeat 1 28 0 2380 56 7 3 chr1 185009514 185009817 -97183847 - AluY SINE Alu -7 304 1 3828 243 39 18 chr1 185010351 185012525 -97181139 - L1ME1 LINE L1 -5 6230 4038 3598 140 37 12 chr1 185012525 185013174 -97180490 - L1MA3 LINE L1 0 6305 5641 3828 243 39 18 chr1 185013174 185013256 -97180408 - L1ME1 LINE L1 -2197 4038 3959 305 260 0 73 chr1 185013256 185013448 -97180216 + (CATA)n Simple_repeat Simple_repeat 2 179 0 * 427 239 48 24 chr1 185013335 185013502 -97180162 + (CATG)n Simple_repeat Simple_repeat 4 174 0 425 241 0 63 chr1 185013426 185013617 -97180047 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 * 2067 247 47 17 chr1 185013618 185014400 -97179264 - L1ME1 LINE L1 -2277 3938 3133 3441 251 74 52 chr1 185014462 185015066 -97178598 - L1ME1 LINE L1 -3670 2545 1956 2113 93 36 0 chr1 185015066 185015345 -97178319 + AluSg SINE Alu 1 289 -21 3441 251 74 52 chr1 185015345 185016551 -97177113 - L1ME1 LINE L1 -4259 1956 739 484 287 18 30 chr1 185016557 185016724 -97176940 - L1ME1 LINE L1 -5780 616 452 431 195 81 49 chr1 185016721 185016844 -97176820 - L1ME1 LINE L1 -6234 162 36 * 3193 279 35 24 chr1 185016863 185017994 -97175670 - L1MEc LINE L1 -5219 1177 35 909 233 53 34 chr1 185018464 185018726 -97174938 - MLT1C LTR MaLR 0 467 201 660 267 124 22 chr1 185018882 185019107 -97174557 + MIR SINE MIR 15 262 0 501 259 42 42 chr1 185019135 185019324 -97174340 - L1MEc LINE L1 -6173 223 35 2032 292 122 67 chr1 185019670 185021005 -97172659 - L2 LINE L2 -725 2589 1159 219 114 0 0 chr1 185021005 185021040 -97172624 + (TG)n Simple_repeat Simple_repeat 1 35 0 2032 292 122 67 chr1 185021040 185021225 -97172439 - L2 LINE L2 -2155 1159 986 243 346 39 0 chr1 185021744 185021822 -97171842 + MIR3 SINE MIR 113 193 -15 213 108 0 0 chr1 185022155 185022192 -97171472 + (TG)n Simple_repeat Simple_repeat 2 38 0 359 291 86 13 chr1 185022272 185022423 -97171241 - MIR3 SINE MIR -28 180 19 230 271 103 37 chr1 185023538 185023645 -97170019 - MIR3 SINE MIR -1 207 94 2062 73 106 0 chr1 185023970 185024271 -97169393 - L1PA13 LINE L1 0 6163 5831 213 328 23 82 chr1 185024435 185024606 -97169058 + MER5A DNA MER1_type 1 161 -28 309 287 299 6 chr1 185024629 185024786 -97168878 - MIR SINE MIR 0 262 60 * 343 339 138 11 chr1 185024781 185024955 -97168709 + MIR SINE MIR 48 243 -19 1684 295 96 38 chr1 185027208 185029557 -97164107 - L1ME3A LINE L1 -219 5951 3465 2061 116 27 3 chr1 185029787 185030081 -97163583 + AluSx SINE Alu 1 301 -11 257 234 41 109 chr1 185030235 185030555 -97163109 - L1ME3A LINE L1 -2769 3377 3080 1330 169 0 19 chr1 185030557 185030770 -97162894 - AluJo SINE Alu -19 293 85 28 29 0 0 chr1 185030802 185030837 -97162827 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr1 185031039 185031065 -97162599 + AT_rich Low_complexity Low_complexity 1 26 0 330 153 0 0 chr1 185031532 185031591 -97162073 + A-rich Low_complexity Low_complexity 1 59 0 334 284 0 12 chr1 185032031 185032112 -97161552 + L2 LINE L2 3190 3269 -44 538 275 130 15 chr1 185032191 185032391 -97161273 + MIR SINE MIR 28 250 -12 420 319 206 28 chr1 185033853 185034289 -97159375 + MLT1H LTR MaLR 22 535 -14 279 334 186 29 chr1 185034360 185034704 -97158960 + L3 LINE CR1 253 650 -927 184 311 0 0 chr1 185034686 185034731 -97158933 - L3 LINE CR1 -456 1121 1077 * 203 239 0 0 chr1 185034820 185034866 -97158798 + MIR3 SINE MIR 158 203 -5 368 210 6 160 chr1 185035092 185035273 -97158391 - MIR SINE MIR -70 192 40 239 216 20 0 chr1 185036280 185036331 -97157333 - L2 LINE L2 0 3272 3221 304 320 107 8 chr1 185036356 185036478 -97157186 + MER5A DNA MER1_type 56 189 0 185 156 0 44 chr1 185036554 185036574 -97157090 + (TAA)n Simple_repeat Simple_repeat 3 22 -23 2391 64 0 7 chr1 185036574 185036869 -97156795 + AluY SINE Alu 3 295 -16 185 156 0 44 chr1 185036869 185036893 -97156771 + (TAA)n Simple_repeat Simple_repeat 22 45 0 183 243 54 95 chr1 185036913 185036987 -97156677 - MIR3 SINE MIR -6 202 132 757 278 145 7 chr1 185037149 185037579 -97156085 + L1PA14 LINE L1 5354 5835 -326 257 377 30 0 chr1 185037985 185038105 -97155559 - MIR SINE MIR -64 144 43 230 365 0 14 chr1 185038874 185038948 -97154716 - MIR SINE MIR -184 78 6 474 205 0 43 chr1 185039088 185039205 -97154459 + MLT2B1 LTR ERVL 1 112 -403 555 16 0 0 chr1 185039205 185039269 -97154395 + (TATTG)n Simple_repeat Simple_repeat 2 65 0 1217 174 117 24 chr1 185039273 185039520 -97154144 - AluJb SINE Alu -28 284 15 1351 208 147 32 chr1 185039529 185039904 -97153760 + MLT2B1 LTR ERVL 103 520 0 735 250 49 5 chr1 185039919 185040103 -97153561 + MIR SINE MIR 71 262 0 2291 91 7 3 chr1 185040235 185040544 -97153120 + AluSp SINE Alu 1 310 -3 445 194 18 165 chr1 185040648 185040818 -97152846 - MER91B DNA MER1_type -8 182 38 1582 170 24 14 chr1 185043079 185043368 -97150296 + AluJo SINE Alu 11 302 -10 253 186 23 12 chr1 185045871 185045957 -97147707 - L1ME4a LINE L1 -2 6119 6033 1026 212 78 65 chr1 185045962 185046406 -97147258 - MSTD LTR MaLR -2 455 4 470 138 92 35 chr1 185046461 185046548 -97147116 - AluJ SINE Alu -29 283 192 * 554 154 0 0 chr1 185046540 185046631 -97147033 - AluJ SINE Alu -201 111 21 832 298 40 8 chr1 185046771 185047019 -97146645 - MIR SINE MIR 0 262 7 192 40 0 0 chr1 185047752 185047777 -97145887 + (GA)n Simple_repeat Simple_repeat 2 26 0 412 260 114 72 chr1 185048275 185048732 -97144932 - MARNA DNA Mariner -43 543 68 1559 237 63 39 chr1 185048889 185049382 -97144282 - MLT1D LTR MaLR 0 505 1 237 332 80 53 chr1 185049549 185049736 -97143928 + L3 LINE CR1 1320 1511 -66 290 325 18 0 chr1 185050661 185050775 -97142889 + L2 LINE L2 1772 1887 -1427 555 29 0 0 chr1 185051335 185051404 -97142260 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 731 281 36 0 chr1 185051406 185051627 -97142037 + MER112 DNA MER1_type 32 260 0 4418 180 53 12 chr1 185051641 185051789 -97141875 - L1MA9 LINE L1 -3 6309 6169 192 77 0 0 chr1 185051789 185051815 -97141849 + (TATG)n Simple_repeat Simple_repeat 1 26 0 4418 180 53 12 chr1 185051815 185052610 -97141054 - L1MA9 LINE L1 -143 6169 5327 2474 98 131 2 chr1 185052610 185053007 -97140657 + LTR7 LTR ERV1 1 448 -2 13672 122 19 16 chr1 185053009 185055561 -97138103 + HERVH LTR ERV1 1 2828 -4885 2457 140 0 5 chr1 185055559 185055944 -97137720 + HERVH LTR ERV1 3354 3736 -3977 * 6533 121 1 2 chr1 185055954 185056922 -97136742 + HERVH LTR ERV1 3994 4949 -2764 2617 93 5 13 chr1 185057024 185057411 -97136253 + HERVH LTR ERV1 7330 7713 0 2548 93 134 2 chr1 185057411 185057807 -97135857 + LTR7 LTR ERV1 1 448 -2 364 87 0 0 chr1 185057830 185057876 -97135788 - MER4E-int LTR ERV1 -6712 46 1 2763 121 31 13 chr1 185057881 185058459 -97135205 - MER4E LTR ERV1 -5 774 1 3352 193 20 7 chr1 185058461 185059204 -97134460 - L1MA9 LINE L1 -1044 5102 4350 366 211 0 4 chr1 185059269 185059349 -97134315 + MLT2B1 LTR ERVL 1 78 -336 216 0 0 0 chr1 185059379 185059403 -97134261 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 810 143 43 0 chr1 185059403 185059543 -97134121 - L1MA5A LINE L1 -8 6289 6144 7797 225 37 17 chr1 185059543 185059752 -97133912 + ERVL-B1 LTR ERVL 23 226 -5538 3728 204 27 1 chr1 185059752 185060467 -97133197 - MER44D DNA MER2_type 0 605 1 7797 225 37 17 chr1 185060467 185061997 -97131667 + ERVL-B1 LTR ERVL 226 1798 -3966 774 187 0 0 chr1 185062010 185062149 -97131515 + ERVL-B1 LTR ERVL 5617 5755 -9 2011 208 46 50 chr1 185062151 185062670 -97130994 + MLT2B1 LTR ERVL 1 517 -3 189 242 0 0 chr1 185062872 185062905 -97130759 + MIR SINE MIR 42 74 -134 181 204 140 108 chr1 185063088 185063181 -97130483 + MIR SINE MIR 8 103 -159 1206 184 56 37 chr1 185063383 185063758 -97129906 - Charlie5 DNA MER1_type 0 2624 2243 436 214 0 0 chr1 185063778 185063876 -97129788 - Charlie5 DNA MER1_type -2510 102 5 255 305 12 0 chr1 185064587 185064669 -97128995 - MIR3 SINE MIR -5 203 121 639 183 75 71 chr1 185064930 185065198 -97128466 + MER33 DNA MER1_type 45 313 -11 217 288 27 14 chr1 185066785 185066858 -97126806 - MIR SINE MIR -11 251 178 2754 265 138 6 chr1 185067056 185068078 -97125586 - MER69B DNA AcHobo 0 1226 70 283 191 52 52 chr1 185068412 185068585 -97125079 + (TTATA)n Simple_repeat Simple_repeat 4 176 0 187 174 43 43 chr1 185069746 185069792 -97123872 - MIR SINE MIR -72 190 145 378 302 60 0 chr1 185069985 185070101 -97123563 - L2 LINE L2 0 3313 3191 756 309 25 16 chr1 185070669 185070912 -97122752 - MIR SINE MIR -3 259 15 209 325 138 56 chr1 185072887 185073047 -97120617 - L2 LINE L2 0 3272 3100 21 0 0 0 chr1 185074017 185074038 -97119626 + AT_rich Low_complexity Low_complexity 1 21 0 348 24 0 0 chr1 185074688 185074729 -97118935 + (TG)n Simple_repeat Simple_repeat 2 42 0 751 289 14 19 chr1 185074923 185075131 -97118533 - MIR3 SINE MIR 0 208 2 260 346 9 23 chr1 185075401 185075538 -97118126 - MIR SINE MIR -62 146 50 225 0 0 0 chr1 185076037 185076062 -97117602 + (A)n Simple_repeat Simple_repeat 1 25 0 193 257 104 69 chr1 185076684 185076828 -97116836 + MIR SINE MIR 100 248 -14 1080 156 8 38 chr1 185077873 185078110 -97115554 + L1MA6 LINE L1 6068 6297 -3 21 57 0 0 chr1 185078235 185078270 -97115394 + AT_rich Low_complexity Low_complexity 1 35 0 3986 269 118 37 chr1 185078287 185080133 -97113531 - L2 LINE L2 0 3313 1225 180 0 0 0 chr1 185080136 185080156 -97113508 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 14083 174 30 7 chr1 185080156 185082425 -97111239 - L1PB1 LINE L1 -6 6861 4645 2151 127 0 3 chr1 185082425 185082716 -97110948 + AluSg SINE Alu 1 290 -20 14083 174 30 7 chr1 185082716 185086377 -97107287 - L1PB1 LINE L1 -2222 4645 636 1046 176 5 0 chr1 185086379 185086578 -97107086 - L1PB1 LINE L1 -6663 200 1 572 313 14 28 chr1 185086615 185086832 -97106832 - L2 LINE L2 -2123 1191 978 194 328 0 0 chr1 185088391 185088449 -97105215 + MIR SINE MIR 58 115 -93 621 257 44 0 chr1 185089119 185089302 -97104362 - LTR33 LTR ERVL -27 494 304 217 370 102 8 chr1 185091366 185091493 -97102171 - MIR3 SINE MIR -3 205 67 683 314 96 27 chr1 185092460 185092836 -97100828 + L2 LINE L2 2813 3214 -99 40289 36 23 3 chr1 185092933 185098950 -97094714 - L1PA3 LINE L1 -5 6150 8 312 218 115 0 chr1 185099203 185099290 -97094374 + MIR SINE MIR 91 187 -75 324 0 0 0 chr1 185099298 185099334 -97094330 + (TA)n Simple_repeat Simple_repeat 2 37 0 234 91 0 0 chr1 185099432 185099465 -97094199 + (TA)n Simple_repeat Simple_repeat 1 33 0 222 279 127 44 chr1 185099516 185099630 -97094034 - L3 LINE CR1 -310 1267 1135 739 83 0 18 chr1 185099630 185099739 -97093925 - L1PA11 LINE L1 0 6174 6068 222 279 127 44 chr1 185099739 185099782 -97093882 - L3 LINE CR1 -442 1135 1097 243 271 75 0 chr1 185099799 185099932 -97093732 + L1MC/D LINE L1 5694 5836 -1972 911 228 60 57 chr1 185099991 185100307 -97093357 - L1MC4 LINE L1 -1030 7012 6696 1374 205 61 59 chr1 185100313 185100772 -97092892 + MLT1C LTR MaLR 8 467 0 485 234 40 27 chr1 185100781 185100848 -97092816 - L1MC4 LINE L1 -1140 6645 6580 542 28 14 0 chr1 185100848 185100920 -97092744 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 485 234 40 27 chr1 185100920 185101070 -97092594 - L1MC4 LINE L1 -1205 6580 6444 423 202 11 0 chr1 185101228 185101322 -97092342 + L1PA10 LINE L1 9 103 -5772 1346 206 21 7 chr1 185101517 185101803 -97091861 + L1PA10 LINE L1 219 508 -5367 3329 188 8 34 chr1 185101803 185103037 -97090627 + L1PA10 LINE L1 717 2038 -4423 19180 138 16 9 chr1 185103082 185107186 -97086478 + L1PA10 LINE L1 2338 6473 -10 629 286 68 36 chr1 185107517 185107769 -97085895 + MIR SINE MIR 1 260 -2 218 143 0 41 chr1 185107845 185107894 -97085770 - L2 LINE L2 -2 3311 3265 238 104 42 0 chr1 185107911 185107959 -97085705 + LTR66 LTR ERVL 384 433 -177 216 135 0 0 chr1 185107962 185107999 -97085665 + (TA)n Simple_repeat Simple_repeat 2 38 0 354 294 13 85 chr1 185108098 185108251 -97085413 + MIR3 SINE MIR 53 194 -14 2826 136 5 2 chr1 185108358 185108785 -97084879 - MSTA LTR MaLR 0 428 1 538 127 15 30 chr1 185110682 185110816 -97082848 + GA-rich Low_complexity Low_complexity 1 132 0 766 286 37 5 chr1 185111068 185111285 -97082379 + MIR SINE MIR 5 228 -34 684 293 0 11 chr1 185111385 185111559 -97082105 + MER5B DNA MER1_type 7 178 0 205 255 21 0 chr1 185112904 185112951 -97080713 + GA-rich Low_complexity Low_complexity 2 49 0 637 363 41 53 chr1 185114434 185115015 -97078649 - L2 LINE L2 -409 2905 2332 225 311 79 85 chr1 185115468 185115796 -97077868 - MLT1K LTR MaLR -3 585 260 200 241 103 86 chr1 185116187 185116303 -97077361 + L2 LINE L2 3116 3233 -39 36754 35 2 0 chr1 185116919 185122107 -97071557 - L1PA2 LINE L1 -57 6098 905 574 110 0 22 chr1 185122108 185122199 -97071465 - L1P1 LINE L1 -451 5704 5616 186 71 0 0 chr1 185123283 185123311 -97070353 + (TG)n Simple_repeat Simple_repeat 1 28 0 288 0 0 0 chr1 185123490 185123522 -97070142 + (A)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr1 185123766 185123791 -97069873 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr1 185125425 185125457 -97068207 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr1 185125993 185126021 -97067643 + AT_rich Low_complexity Low_complexity 1 28 0 211 333 57 49 chr1 185126021 185126144 -97067520 - L2 LINE L2 -28 3244 3121 320 277 12 0 chr1 185126494 185126577 -97067087 - MIR SINE MIR -82 180 97 4304 289 58 35 chr1 185126638 185129058 -97064606 + L1MEc LINE L1 46 2521 -3875 1027 240 37 37 chr1 185129069 185129448 -97064216 + L1MEc LINE L1 2626 3004 -3211 261 0 0 0 chr1 185129477 185129506 -97064158 + (CA)n Simple_repeat Simple_repeat 2 30 0 233 297 14 0 chr1 185129510 185129584 -97064080 - L1MA10 LINE L1 -44 6290 6216 591 214 121 27 chr1 185129891 185130115 -97063549 + L1MB8 LINE L1 1389 1633 -4751 4764 179 37 7 chr1 185130134 185131097 -97062567 + L1MC2 LINE L1 5345 6336 -8 824 30 0 10 chr1 185131111 185131211 -97062453 - L1PA3 LINE L1 -9 6146 6048 598 273 55 48 chr1 185131222 185131552 -97062112 + L1MB8 LINE L1 1796 2127 -4436 433 276 53 62 chr1 185131563 185131918 -97061746 + L1MEc LINE L1 1731 2082 -4314 459 226 31 67 chr1 185132072 185132267 -97061397 + L1MEc LINE L1 3919 4106 -2109 1855 222 88 111 chr1 185132274 185133224 -97060440 + L1MEc LINE L1 4273 5201 -1014 1296 221 37 73 chr1 185133380 185134069 -97059595 + L1MB8 LINE L1 5297 5957 -521 5581 32 0 3 chr1 185134069 185134734 -97058930 - L1PA4 LINE L1 -2 6153 5491 2190 183 20 13 chr1 185134750 185135198 -97058466 + L1MB8 LINE L1 5964 6414 0 205 302 69 52 chr1 185135656 185135772 -97057892 + MIR SINE MIR 21 138 -70 39 38 0 0 chr1 185135874 185135927 -97057737 + AT_rich Low_complexity Low_complexity 1 53 0 762 198 0 0 chr1 185136228 185136390 -97057274 + CT-rich Low_complexity Low_complexity 2 163 0 3706 176 16 47 chr1 185136434 185137223 -97056441 - L1MC3 LINE L1 -12 7773 7009 3930 198 45 2 chr1 185137225 185138042 -97055622 - L1MC3 LINE L1 -1022 6763 5912 * 4550 235 48 28 chr1 185138030 185138225 -97055439 - L1PA15-16 LINE L1 -2728 4121 3931 1979 124 20 3 chr1 185138225 185138523 -97055141 - AluSx SINE Alu -7 305 3 4550 235 48 28 chr1 185138523 185138818 -97054846 - L1PA15-16 LINE L1 -2918 3931 3643 2359 86 3 0 chr1 185138818 185139109 -97054555 - AluSp SINE Alu -21 292 1 4550 235 48 28 chr1 185139109 185140525 -97053139 - L1PA15-16 LINE L1 -3206 3643 2196 240 111 0 0 chr1 185140525 185140570 -97053094 + (TA)n Simple_repeat Simple_repeat 2 46 0 4550 235 48 28 chr1 185140570 185141610 -97052054 - L1PA15-16 LINE L1 -4653 2196 1178 1186 294 45 56 chr1 185141811 185142437 -97051227 - L1PA15-16 LINE L1 -6229 620 2 2284 237 58 3 chr1 185142442 185143130 -97050534 - L1MCa LINE L1 -3103 3323 2598 1941 182 49 29 chr1 185143132 185143525 -97050139 - L1MB3 LINE L1 -2 6181 5776 474 18 0 0 chr1 185143525 185143580 -97050084 + (TA)n Simple_repeat Simple_repeat 2 56 0 1941 182 49 29 chr1 185143580 185143631 -97050033 - L1MB3 LINE L1 -407 5776 5728 1355 223 96 0 chr1 185143630 185144074 -97049590 - L1MCa LINE L1 -3947 2479 2075 * 2028 141 26 45 chr1 185144964 185145346 -97048318 + THE1C LTR MaLR 1 375 0 372 292 168 38 chr1 185145496 185145835 -97047829 + L2 LINE L2 1934 2316 -998 2171 125 7 0 chr1 185145849 185146152 -97047512 + AluSg SINE Alu 1 305 -5 436 290 0 0 chr1 185146231 185146376 -97047288 - L1M4 LINE L1 -979 5167 5023 314 335 161 19 chr1 185146393 185146548 -97047116 + MER5A DNA MER1_type 13 189 0 6068 161 7 4 chr1 185146658 185147670 -97045994 - L1MC1 LINE L1 0 6333 5319 * 42859 31 22 1 chr1 185147666 185153719 -97039945 - L1PA2 LINE L1 0 6155 3 1629 236 15 25 chr1 185153717 185154487 -97039177 - L1MC1 LINE L1 -820 5326 4448 * 262 329 146 22 chr1 185154529 185154844 -97038820 + L2 LINE L2 2671 3078 -194 574 236 0 0 chr1 185155479 185155589 -97038075 + MLT1A1 LTR MaLR 1 110 -255 420 148 148 34 chr1 185155587 185155675 -97037989 + MLT1A1 LTR MaLR 271 368 -6 * 503 349 8 0 chr1 185156112 185156244 -97037420 - L2 LINE L2 -6 3266 3134 1494 178 63 66 chr1 185156291 185156346 -97037318 - MLT1B LTR MaLR -1 389 335 3466 137 8 9 chr1 185156346 185156873 -97036791 + MER1A DNA MER1_type 2 527 0 1494 178 63 66 chr1 185156873 185157256 -97036408 - MLT1B LTR MaLR -55 335 1 1475 179 60 3 chr1 185157296 185157643 -97036021 - Charlie5 DNA MER1_type -11 2601 2235 614 158 8 53 chr1 185157641 185157748 -97035916 - Charlie5 DNA MER1_type -2497 127 26 * 1324 190 10 111 chr1 185157748 185158154 -97035510 - MLT1A1 LTR MaLR 0 365 1 614 158 8 53 chr1 185158154 185158179 -97035485 - Charlie5 DNA MER1_type -2598 26 1 427 320 50 6 chr1 185159120 185159301 -97034363 - L2 LINE L2 -41 3272 3084 292 267 35 95 chr1 185159309 185159425 -97034239 - L2 LINE L2 -1 3271 3163 345 292 97 9 chr1 185159654 185159828 -97033836 + MIR3 SINE MIR 2 190 -63 818 230 146 9 chr1 185160910 185161136 -97032528 + AluSg1 SINE Alu 36 292 -17 418 322 44 19 chr1 185162317 185162522 -97031142 - MIR SINE MIR -40 222 13 454 247 21 0 chr1 185162654 185162751 -97030913 + MER5A DNA MER1_type 9 107 -82 200 227 0 0 chr1 185164027 185164071 -97029593 + T-rich Low_complexity Low_complexity 1 44 0 255 333 59 0 chr1 185165750 185165852 -97027812 + L3 LINE CR1 1380 1487 -90 198 0 0 0 chr1 185166024 185166046 -97027618 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 950 226 74 65 chr1 185167331 185167478 -97026186 - MER2 DNA MER2_type 0 345 201 3950 81 14 4 chr1 185167478 185168036 -97025628 - L1MA1 LINE L1 0 6302 5739 950 226 74 65 chr1 185168036 185168225 -97025439 - MER2 DNA MER2_type -144 201 6 517 319 72 14 chr1 185168248 185168476 -97025188 - MIR SINE MIR -24 238 5 28 48 0 0 chr1 185169053 185169095 -97024569 + AT_rich Low_complexity Low_complexity 1 42 0 207 213 16 33 chr1 185169729 185169790 -97023874 - MIR SINE MIR -92 170 111 250 211 0 39 chr1 185169822 185169874 -97023790 - L2 LINE L2 -54 3259 3210 2464 80 0 6 chr1 185169874 185170185 -97023479 + AluY SINE Alu 1 309 -2 21 36 0 0 chr1 185170350 185170378 -97023286 + AT_rich Low_complexity Low_complexity 1 28 0 403 280 129 0 chr1 185170619 185170751 -97022913 - MER5B DNA MER1_type 0 178 30 774 291 159 33 chr1 185170790 185171332 -97022332 + MLT1L LTR MaLR 6 615 0 345 307 0 0 chr1 185171954 185172055 -97021609 - MIR SINE MIR 0 262 162 233 333 7 82 chr1 185172321 185172456 -97021208 - L2 LINE L2 -4 3268 3144 667 227 0 43 chr1 185173135 185173298 -97020366 + MER20 DNA MER1_type 1 156 -63 291 264 57 36 chr1 185173548 185173688 -97019976 - MIR3 SINE MIR -1 207 65 195 100 0 0 chr1 185173988 185174018 -97019646 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1240 301 120 50 chr1 185174176 185174925 -97018739 + L2 LINE L2 2350 3045 -227 333 0 0 0 chr1 185174925 185174962 -97018702 + (TG)n Simple_repeat Simple_repeat 1 37 0 234 0 0 0 chr1 185174961 185174987 -97018677 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 1240 301 120 50 chr1 185174962 185175096 -97018568 + L2 LINE L2 3045 3272 0 328 339 106 33 chr1 185175419 185175779 -97017885 - L3 LINE CR1 -868 709 324 332 328 0 80 chr1 185176153 185176206 -97017458 + MIR3 SINE MIR 45 101 -107 1145 231 9 0 chr1 185176206 185176427 -97017237 - MER58A DNA MER1_type 0 224 2 332 328 0 80 chr1 185176427 185176498 -97017166 + MIR3 SINE MIR 101 159 -49 318 296 165 6 chr1 185177448 185177624 -97016040 - MIR SINE MIR -44 218 15 183 283 0 94 chr1 185179115 185179221 -97014443 - MIR SINE MIR -56 206 111 2689 148 78 68 chr1 185179557 185180163 -97013501 - LTR9 LTR ERV1 0 612 1 396 329 64 7 chr1 185180440 185180580 -97013084 + L2 LINE L2 3116 3263 -9 212 286 295 0 chr1 185180587 185180699 -97012965 - L2 LINE L2 -12 3260 3116 201 231 0 0 chr1 185181379 185181418 -97012246 + CT-rich Low_complexity Low_complexity 1 39 0 285 222 42 0 chr1 185182249 185182321 -97011343 - MER116 DNA Mariner -5 75 1 865 156 19 0 chr1 185182662 185182816 -97010848 - L1MC3 LINE L1 -207 7578 7422 291 337 78 24 chr1 185183567 185183733 -97009931 + L2 LINE L2 2501 2675 -639 629 301 47 14 chr1 185183858 185184071 -97009593 + MIR SINE MIR 43 262 0 227 334 54 54 chr1 185184367 185184491 -97009173 - MIR SINE MIR -82 126 3 2207 103 3 0 chr1 185185227 185185518 -97008146 - AluSc SINE Alu -17 292 1 182 293 57 93 chr1 185185861 185186001 -97007663 + MIR SINE MIR 65 199 -63 748 333 108 41 chr1 185186954 185188709 -97004955 + L1MC2 LINE L1 2222 4098 -2284 440 309 60 25 chr1 185188712 185189145 -97004519 + L1MC2 LINE L1 4115 4562 -1820 * 662 205 13 1 chr1 185189136 185189304 -97004360 + L1M3 LINE L1 3841 4009 -2137 791 221 114 129 chr1 185189304 185189814 -97003850 + LTR28 LTR ERV1 1 1305 -450 5279 210 48 14 chr1 185189852 185191278 -97002386 + L1M3 LINE L1 4006 5489 -682 195 42 0 0 chr1 185191278 185191302 -97002362 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5279 210 48 14 chr1 185191302 185191340 -97002324 + L1M3 LINE L1 5489 5524 -647 330 304 123 10 chr1 185191386 185191590 -97002074 + L1MC2 LINE L1 4966 5192 -1190 532 253 80 80 chr1 185191729 185192081 -97001583 + L1MC4 LINE L1 6716 7067 -975 610 303 107 30 chr1 185192084 185192384 -97001280 + L2 LINE L2 2636 2958 -356 424 304 48 19 chr1 185192359 185192566 -97001098 + L2 LINE L2 3101 3313 0 * 485 314 41 12 chr1 185192785 185192957 -97000707 - MIR3 SINE MIR -11 197 21 439 248 28 0 chr1 185194033 185194142 -96999522 + MER5A DNA MER1_type 1 112 -77 256 299 0 0 chr1 185194402 185194469 -96999195 + GA-rich Low_complexity Low_complexity 2 68 0 351 308 75 14 chr1 185194761 185194907 -96998757 + MLT1I LTR MaLR 237 391 -18 237 65 0 0 chr1 185196229 185196260 -96997404 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 203 304 62 54 chr1 185196835 185196947 -96996717 - L2 LINE L2 -24 3248 3136 4726 189 38 20 chr1 185197076 185198093 -96995571 + L1MC2 LINE L1 5529 6566 -14 2395 86 0 0 chr1 185198093 185198396 -96995268 - AluY SINE Alu -8 303 1 4726 189 38 20 chr1 185198396 185198411 -96995253 + L1MC2 LINE L1 6566 6579 -1 251 338 152 7 chr1 185198623 185198774 -96994890 + MIR SINE MIR 34 206 -56 305 290 32 24 chr1 185199459 185199583 -96994081 - MIR SINE MIR -55 207 83 214 372 44 51 chr1 185199784 185199921 -96993743 - L2 LINE L2 -5 3267 3132 1112 264 113 41 chr1 185199935 185200672 -96992992 - LTR1B LTR ERV1 0 785 25 325 306 217 6 chr1 185200722 185200879 -96992785 + L1MC4a LINE L1 5989 6178 -1630 930 218 90 113 chr1 185202278 185202804 -96990860 + MLT1D LTR MaLR 1 626 0 268 246 72 22 chr1 185203483 185203621 -96990043 - L1ME4a LINE L1 -1 6120 5976 220 383 102 8 chr1 185204473 185204601 -96989063 - L2 LINE L2 -18 3254 3115 1723 173 0 7 chr1 185204622 185204911 -96988753 - AluSx SINE Alu -15 297 11 1839 193 74 0 chr1 185205198 185205561 -96988103 - MLT1B LTR MaLR 0 390 1 253 290 99 23 chr1 185205924 185206055 -96987609 - MER5A DNA MER1_type 0 189 49 190 366 30 37 chr1 185205957 185206091 -96987573 + MER5A DNA MER1_type 54 186 -3 * 209 206 0 29 chr1 185206252 185206320 -96987344 + GA-rich Low_complexity Low_complexity 1 66 0 311 282 111 0 chr1 185206328 185206445 -96987219 - MLT1L LTR MaLR -353 262 133 767 277 23 31 chr1 185206635 185206891 -96986773 - MIR SINE MIR -3 259 6 21 0 0 0 chr1 185207735 185207756 -96985908 + AT_rich Low_complexity Low_complexity 1 21 0 186 339 36 0 chr1 185208733 185208789 -96984875 + L2 LINE L2 3173 3230 -42 297 347 57 23 chr1 185209036 185209212 -96984452 - L3 LINE CR1 -67 1510 1329 273 223 11 75 chr1 185211085 185211179 -96982485 - MIR SINE MIR -51 211 124 289 308 53 15 chr1 185212172 185212305 -96981359 + L2 LINE L2 2595 2732 -582 235 204 0 37 chr1 185212508 185212562 -96981102 + CT-rich Low_complexity Low_complexity 3 54 0 3720 189 40 52 chr1 185212581 185213709 -96979955 - L1MB8 LINE L1 -18 6160 5038 1550 175 13 38 chr1 185213709 185214023 -96979641 - AluJb SINE Alu -6 306 1 3720 189 40 52 chr1 185214023 185214069 -96979595 - L1MB8 LINE L1 -1140 5038 4993 5291 159 61 5 chr1 185214085 185215564 -96978100 - L1MA4 LINE L1 -8 6292 4735 1197 103 0 11 chr1 185215575 185215760 -96977904 - L1PA14 LINE L1 0 6161 5979 1910 146 146 8 chr1 185215924 185216300 -96977364 + MSTA LTR MaLR 1 428 0 1836 256 83 49 chr1 185216435 185218000 -96975664 - L1M4c LINE L1 -4437 2701 956 402 69 0 0 chr1 185218118 185218176 -96975488 + (TG)n Simple_repeat Simple_repeat 2 59 0 562 196 7 7 chr1 185218424 185218562 -96975102 + CT-rich Low_complexity Low_complexity 3 140 0 327 241 0 0 chr1 185218564 185218647 -96975017 + C-rich Low_complexity Low_complexity 4 86 0 546 269 52 31 chr1 185218982 185219175 -96974489 + MIR SINE MIR 11 207 -55 209 105 0 26 chr1 185219377 185219415 -96974249 + L2 LINE L2 3273 3309 -4 267 294 20 39 chr1 185219600 185219700 -96973964 + MIR SINE MIR 48 145 -63 211 357 18 62 chr1 185219700 185219812 -96973852 - MER5A DNA MER1_type -1 188 82 195 42 0 0 chr1 185220522 185220546 -96973118 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1585 171 29 4 chr1 185220549 185220829 -96972835 - AluSx SINE Alu -25 287 1 272 245 0 41 chr1 185220868 185220966 -96972698 - L1MC4 LINE L1 -1334 6708 6615 1187 220 79 26 chr1 185220972 185221313 -96972351 - L1ME1 LINE L1 -22 6144 5786 352 264 11 22 chr1 185221317 185221495 -96972169 + (TA)n Simple_repeat Simple_repeat 1 176 0 1562 241 49 66 chr1 185221496 185222517 -96971147 - L1M3 LINE L1 -381 5790 4790 485 197 0 7 chr1 185222521 185222663 -96971001 + (TA)n Simple_repeat Simple_repeat 1 141 0 226 311 0 0 chr1 185222670 185222760 -96970904 + L1MC4 LINE L1 6614 6703 -1339 225 211 0 0 chr1 185222765 185222822 -96970842 + (TA)n Simple_repeat Simple_repeat 1 57 0 2060 245 82 8 chr1 185222826 185223549 -96970115 - L1M3 LINE L1 -1346 4800 4025 624 304 116 20 chr1 185223550 185223988 -96969676 - L1M3 LINE L1 -2465 3681 3202 294 176 39 0 chr1 185223983 185224034 -96969630 - L1P LINE L1 -1215 4931 4879 * 2997 205 34 1 chr1 185224088 185224214 -96969450 - L1 LINE L1 -1269 4877 4757 639 39 0 0 chr1 185224214 185224292 -96969372 + (TATAG)n Simple_repeat Simple_repeat 5 82 0 2997 205 34 1 chr1 185224292 185224833 -96968831 - L1 LINE L1 -1389 4757 4188 * 5415 160 26 9 chr1 185224831 185226041 -96967623 + L1PA16 LINE L1 4926 6164 -2 722 266 55 22 chr1 185226035 185226347 -96967317 - L1M3 LINE L1 -2936 3210 2889 * 1332 276 73 29 chr1 185226347 185227411 -96966253 - L1MCc LINE L1 -4748 2193 1081 1055 265 81 19 chr1 185227442 185227872 -96965792 - L1MCc LINE L1 -5943 480 24 231 397 84 8 chr1 185228528 185228659 -96965005 + L2 LINE L2 3123 3263 -9 241 260 0 26 chr1 185230199 185230276 -96963388 + A-rich Low_complexity Low_complexity 2 76 0 2029 136 7 0 chr1 185230343 185230669 -96962995 + AluSq SINE Alu 1 328 0 326 386 11 53 chr1 185230867 185231056 -96962608 - MIR SINE MIR -69 193 13 195 350 50 10 chr1 185232283 185232383 -96961281 - MIR SINE MIR -73 189 86 268 200 0 57 chr1 185232512 185232582 -96961082 + T-rich Low_complexity Low_complexity 3 68 0 180 111 0 0 chr1 185232787 185232814 -96960850 + (AATTG)n Simple_repeat Simple_repeat 5 31 0 2096 118 0 0 chr1 185233709 185233989 -96959675 + AluSc SINE Alu 1 280 -29 27 0 0 0 chr1 185233992 185234019 -96959645 + AT_rich Low_complexity Low_complexity 1 27 0 270 271 0 0 chr1 185234707 185234766 -96958898 + (TG)n Simple_repeat Simple_repeat 2 60 0 797 262 133 31 chr1 185235472 185235505 -96958159 - LTR40b LTR ERVL 0 462 434 2071 137 45 25 chr1 185235505 185235862 -96957802 - THE1B LTR MaLR 0 364 1 797 262 133 31 chr1 185235862 185236122 -96957542 - LTR40b LTR ERVL -28 434 139 193 392 29 29 chr1 185237083 185237254 -96956410 - MER5A DNA MER1_type -12 177 7 288 0 0 0 chr1 185237285 185237317 -96956347 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 310 379 0 15 chr1 185238540 185238672 -96954992 - L2 LINE L2 -2 3311 3182 530 192 0 0 chr1 185239237 185239336 -96954328 + MLT1E2 LTR MaLR 528 626 0 1226 228 91 37 chr1 185239358 185239429 -96954235 - L1ME LINE L1 -349 5749 5683 2350 103 3 0 chr1 185239429 185239741 -96953923 - AluSp SINE Alu 0 313 1 1226 228 91 37 chr1 185239741 185240538 -96953126 - L1ME LINE L1 -415 5683 4659 932 237 41 22 chr1 185240617 185240933 -96952731 - L1ME LINE L1 -3181 2899 2578 576 323 120 33 chr1 185241134 185241533 -96952131 - L1ME LINE L1 -5634 436 3 1214 154 73 5 chr1 185241554 185241774 -96951890 + MER46A DNA MER2_type 1 235 -1 25 65 0 0 chr1 185241985 185242031 -96951633 + AT_rich Low_complexity Low_complexity 1 46 0 422 286 35 35 chr1 185242071 185242270 -96951394 - L1MDa LINE L1 -4498 2042 1844 359 270 60 69 chr1 185242260 185242605 -96951059 + L1ME LINE L1 1001 1388 -4984 * 1325 315 37 27 chr1 185242611 185243306 -96950358 - L1MDa LINE L1 -5302 1228 527 14315 153 32 16 chr1 185243567 185243803 -96949861 - L1MA2 LINE L1 0 7723 7492 2419 89 0 0 chr1 185243803 185244106 -96949558 - AluSx SINE Alu -9 303 1 14315 153 32 16 chr1 185244106 185244537 -96949127 - L1MA2 LINE L1 -231 7492 7069 1800 151 128 50 chr1 185244537 185244934 -96948730 - MSTA LTR MaLR 0 428 1 14315 153 32 16 chr1 185244934 185249920 -96943744 - L1MA2 LINE L1 -654 7069 1964 6525 184 11 3 chr1 185249924 185251057 -96942607 - L1MA2 LINE L1 -5657 1908 766 12112 173 39 16 chr1 185301058 185301246 -96892418 - L1M1 LINE L1 -481 7242 7060 1822 151 128 50 chr1 185301246 185301643 -96892021 - MSTA LTR MaLR 0 428 1 12112 173 39 16 chr1 185301643 185304806 -96888858 - L1M1 LINE L1 -663 7060 3807 17842 148 62 6 chr1 185304908 185308127 -96885537 - L1M1 LINE L1 -3989 3576 179 696 257 28 6 chr1 185308179 185308358 -96885306 + MER63A DNA MER1_type 1 183 -27 971 251 0 9 chr1 185308433 185308652 -96885012 - MER58A DNA MER1_type -4 220 4 217 370 102 8 chr1 185310724 185310851 -96882813 - MIR3 SINE MIR -3 205 67 683 314 96 27 chr1 185311818 185312194 -96881470 + L2 LINE L2 2813 3214 -99 24817 34 16 18 chr1 185312291 185318441 -96875223 - L1PA3 LINE L1 -5 6150 8 317 218 115 0 chr1 185318694 185318781 -96874883 + MIR SINE MIR 91 187 -75 360 0 0 0 chr1 185318789 185318829 -96874835 + (TA)n Simple_repeat Simple_repeat 2 41 0 234 91 0 0 chr1 185318927 185318960 -96874704 + (TA)n Simple_repeat Simple_repeat 1 33 0 223 279 127 44 chr1 185319011 185319125 -96874539 - L3 LINE CR1 -310 1267 1135 742 83 0 18 chr1 185319125 185319234 -96874430 - L1PA11 LINE L1 0 6174 6068 223 279 127 44 chr1 185319234 185319277 -96874387 - L3 LINE CR1 -442 1135 1097 274 271 75 0 chr1 185319294 185319427 -96874237 + L1MC/D LINE L1 5694 5836 -1972 1009 228 60 57 chr1 185319486 185319802 -96873862 - L1MC4 LINE L1 -1030 7012 6696 1513 209 59 57 chr1 185319808 185320267 -96873397 + MLT1C LTR MaLR 8 467 0 518 234 40 27 chr1 185320276 185320343 -96873321 - L1MC4 LINE L1 -1140 6645 6580 503 16 16 0 chr1 185320343 185320407 -96873257 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 518 234 40 27 chr1 185320407 185320557 -96873107 - L1MC4 LINE L1 -1205 6580 6444 1038 169 6 6 chr1 185320715 185320893 -96872771 + L1P3 LINE L1 9 186 -5689 1418 212 21 10 chr1 185321011 185321299 -96872365 + L1P3 LINE L1 218 508 -5367 * 3548 211 56 42 chr1 185321285 185322533 -96871131 + L1P3 LINE L1 759 2038 -4423 21168 121 12 7 chr1 185322573 185325907 -96867757 + L1P3 LINE L1 2333 5673 -798 209 309 0 15 chr1 185326231 185326299 -96867365 + MIR SINE MIR 153 219 -43 296 325 9 26 chr1 185326567 185326681 -96866983 + L2 LINE L2 3200 3311 -2 189 388 0 0 chr1 185327063 185327130 -96866534 - L2 LINE L2 -219 3053 2987 234 0 0 0 chr1 185328065 185328091 -96865573 + (CA)n Simple_repeat Simple_repeat 2 27 0 186 43 0 0 chr1 185328096 185328119 -96865545 + (CAT)n Simple_repeat Simple_repeat 3 25 0 229 326 47 0 chr1 185328605 185328691 -96864973 + Charlie8 DNA MER1_type 196 285 -2132 1981 252 20 42 chr1 185329138 185329681 -96863983 + MLT1E LTR MaLR 2 532 -61 707 225 0 0 chr1 185329681 185329823 -96863841 + FRAM SINE Alu 33 174 -2 313 194 0 16 chr1 185329824 185329886 -96863778 + MLT1E LTR MaLR 564 624 0 1844 198 61 73 chr1 185330105 185330495 -96863169 - MLT1D LTR MaLR -6 499 115 230 0 0 32 chr1 185330495 185330526 -96863138 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 1844 198 61 73 chr1 185330526 185330640 -96863024 - MLT1D LTR MaLR -390 115 1 22 35 0 0 chr1 185331256 185331285 -96862379 + AT_rich Low_complexity Low_complexity 1 29 0 393 22 0 0 chr1 185331548 185331594 -96862070 + (TC)n Simple_repeat Simple_repeat 2 47 0 270 0 0 0 chr1 185331593 185331623 -96862041 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 242 365 12 0 chr1 185333532 185333617 -96860047 - L2 LINE L2 -44 3228 3143 746 265 12 0 chr1 185333617 185333783 -96859881 + MER45A DNA AcHobo 4 171 -7 23 0 0 0 chr1 185334437 185334460 -96859204 + AT_rich Low_complexity Low_complexity 1 23 0 39 38 0 0 chr1 185335247 185335300 -96858364 + AT_rich Low_complexity Low_complexity 1 53 0 205 302 69 52 chr1 185335402 185335518 -96858146 - MIR SINE MIR -70 138 21 2190 183 20 13 chr1 185335976 185336424 -96857240 - L1MB8 LINE L1 0 6178 5728 5656 27 0 3 chr1 185336440 185337105 -96856559 + L1PA4 LINE L1 5491 6153 -2 2802 221 65 91 chr1 185337105 185338674 -96854990 - L1MB8 LINE L1 -521 5721 4204 459 226 31 67 chr1 185338681 185338876 -96854788 - L1MB8 LINE L1 -2109 4037 3850 445 273 53 62 chr1 185339030 185339385 -96854279 - L1MEc LINE L1 -4314 2082 1731 598 273 55 48 chr1 185339396 185339726 -96853938 - L1MEc LINE L1 -4436 2127 1796 829 46 0 9 chr1 185339737 185339845 -96853819 + L1PA3 LINE L1 6048 6154 -1 5030 172 35 6 chr1 185339848 185340815 -96852849 - L1MC2 LINE L1 -5 6339 5345 578 219 121 27 chr1 185340834 185341058 -96852606 - L1MEc LINE L1 -4751 1633 1389 277 319 34 8 chr1 185341045 185341164 -96852500 + MLT1-int LTR MaLR 480 601 -770 * 458 233 19 38 chr1 185341205 185341364 -96852300 - L1ME LINE L1 -442 5724 5569 387 290 11 2 chr1 185341378 185341504 -96852160 + L1ME1 LINE L1 6005 6290 -44 261 0 0 0 chr1 185341508 185341537 -96852127 + (TG)n Simple_repeat Simple_repeat 2 30 0 4304 276 101 33 chr1 185341566 185344376 -96849288 - L1MEc LINE L1 -3211 3004 46 320 277 12 0 chr1 185344437 185344520 -96849144 + MIR SINE MIR 97 180 -82 211 333 57 49 chr1 185344870 185344993 -96848671 + L2 LINE L2 3121 3244 -28 21 36 0 0 chr1 185344993 185345021 -96848643 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr1 185345557 185345589 -96848075 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr1 185347223 185347248 -96846416 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chr1 185347492 185347524 -96846140 + (T)n Simple_repeat Simple_repeat 1 32 0 186 71 0 0 chr1 185347703 185347731 -96845933 + (CA)n Simple_repeat Simple_repeat 1 28 0 370 307 53 0 chr1 185348693 185348807 -96844857 - L2 LINE L2 -37 3235 3116 225 311 79 85 chr1 185349198 185349526 -96844138 + MLT1K LTR MaLR 260 585 -3 637 363 41 53 chr1 185350131 185350712 -96842952 + L2 LINE L2 2332 2905 -409 205 255 21 0 chr1 185352195 185352242 -96841422 + CT-rich Low_complexity Low_complexity 2 49 0 678 293 0 11 chr1 185353587 185353761 -96839903 - MER5B DNA MER1_type 0 178 7 766 286 37 5 chr1 185353861 185354078 -96839586 - MIR SINE MIR -34 228 5 538 127 15 30 chr1 185354330 185354464 -96839200 + CT-rich Low_complexity Low_complexity 1 132 0 226 276 0 17 chr1 185355473 185355531 -96838133 - MER81 DNA DNA -57 57 1 2821 136 5 2 chr1 185356361 185356788 -96836876 + MSTA LTR MaLR 1 428 0 355 294 13 85 chr1 185356895 185357048 -96836616 - MIR3 SINE MIR -14 194 53 304 75 0 0 chr1 185357236 185357276 -96836388 - L1MA6 LINE L1 -357 5943 5904 565 152 11 125 chr1 185357312 185357496 -96836168 + L1MC3 LINE L1 7608 7770 -15 706 259 43 81 chr1 185358475 185358845 -96834819 + MLT1I LTR MaLR 48 403 -6 189 305 73 24 chr1 185359373 185359455 -96834209 - MIR SINE MIR -162 100 15 645 239 72 114 chr1 185359596 185360182 -96833482 + MLT1G LTR MaLR 3 581 -9 255 288 12 25 chr1 185360332 185360412 -96833252 + L2 LINE L2 3188 3266 -6 226 284 116 32 chr1 185360416 185360511 -96833153 + L2 LINE L2 3158 3260 -12 408 307 85 82 chr1 185360666 185360995 -96832669 + L2 LINE L2 2943 3272 0 218 326 53 0 chr1 185361115 185361210 -96832454 - L3b LINE CR1 -380 1203 1104 183 318 32 0 chr1 185361246 185361309 -96832355 - L3 LINE CR1 -583 994 930 494 119 12 0 chr1 185361710 185361794 -96831870 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 982 205 24 48 chr1 185362885 185363134 -96830530 - MIR SINE MIR -10 252 10 407 319 59 12 chr1 185363332 185363501 -96830163 - MIR SINE MIR -29 233 57 182 330 200 0 chr1 185363788 185363888 -96829776 + L2 LINE L2 3137 3256 -16 431 314 96 31 chr1 185365732 185365892 -96827772 - MIR SINE MIR -10 198 28 1096 168 67 126 chr1 185367256 185367644 -96826020 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr1 185370098 185370127 -96823537 + AT_rich Low_complexity Low_complexity 1 29 0 405 86 0 0 chr1 185371942 185372000 -96821664 + (CA)n Simple_repeat Simple_repeat 2 59 0 450 341 57 16 chr1 185372136 185372382 -96821282 - MIR SINE MIR 0 262 7 276 390 16 8 chr1 185372598 185372721 -96820943 + MIR SINE MIR 20 143 -119 195 158 26 0 chr1 185373814 185373852 -96819812 - L2 LINE L2 0 3313 3275 181 71 0 71 chr1 185374149 185374191 -96819473 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 762 221 121 8 chr1 185374393 185374633 -96819031 - L1MD3 LINE L1 0 7995 7729 30 27 0 0 chr1 185374644 185374681 -96818983 + AT_rich Low_complexity Low_complexity 1 37 0 1921 140 4 4 chr1 185374778 185375103 -96818561 - AluSx SINE Alu 0 329 5 1642 178 39 9 chr1 185375656 185375987 -96817677 + MER2 DNA MER2_type 3 343 -1 314 338 73 58 chr1 185378086 185378550 -96815114 - MLT1K LTR MaLR -18 570 100 1528 103 43 13 chr1 185381105 185381337 -96812327 - AluSg/x SINE Alu 0 310 72 412 295 24 62 chr1 185381566 185381776 -96811888 + L1MC4a LINE L1 5723 5924 -1884 1240 236 50 30 chr1 185382184 185382545 -96811119 - MLT1A2 LTR MaLR 0 374 7 1642 86 5 0 chr1 185382697 185382907 -96810757 - AluSp SINE Alu 0 313 103 41128 43 7 1 chr1 185382923 185389040 -96804624 - L1PA4 LINE L1 -3 6152 1 950 78 0 0 chr1 185389040 185389155 -96804509 - AluSq/x SINE Alu -194 118 4 245 222 69 28 chr1 185389380 185389452 -96804212 + L3 LINE CR1 1502 1576 -1 27 29 0 0 chr1 185392464 185392498 -96801166 + AT_rich Low_complexity Low_complexity 1 34 0 441 307 26 32 chr1 185392845 185393034 -96800630 + MIR SINE MIR 74 261 -1 260 298 53 0 chr1 185393495 185393589 -96800075 - MIR SINE MIR -74 188 90 291 104 0 0 chr1 185394019 185394067 -96799597 + (CA)n Simple_repeat Simple_repeat 2 49 0 814 244 0 17 chr1 185394819 185394999 -96798665 - MER45A DNA AcHobo -1 177 1 1299 271 60 109 chr1 185395534 185396390 -96797274 + HAL1 LINE L1 6 860 -1647 359 186 29 0 chr1 185396390 185396460 -96797204 - MER45 DNA AcHobo -923 117 46 1299 271 60 109 chr1 185396460 185396725 -96796939 + HAL1 LINE L1 860 1137 -1370 458 248 101 0 chr1 185397243 185397352 -96796312 + L2 LINE L2 3194 3313 0 341 123 35 0 chr1 185397567 185397624 -96796040 + MER94 DNA DNA 1 59 -75 22 35 0 0 chr1 185397769 185397798 -96795866 + AT_rich Low_complexity Low_complexity 1 29 0 251 270 0 16 chr1 185400357 185400420 -96793244 + (TG)n Simple_repeat Simple_repeat 1 62 0 1025 270 177 46 chr1 185401557 185402788 -96790876 + HAL1 LINE L1 726 2127 -380 1918 176 30 0 chr1 185402788 185403124 -96790540 + MER7A DNA MER2_type 2 345 -1 1025 270 177 46 chr1 185403124 185403155 -96790509 + HAL1 LINE L1 2127 2153 -354 4769 164 23 23 chr1 185403159 185403894 -96789770 + L1MA8 LINE L1 4585 5319 -972 1863 103 0 0 chr1 185403894 185404136 -96789528 + AluY SINE Alu 64 305 -6 4769 164 23 23 chr1 185404136 185404778 -96788886 + L1MA8 LINE L1 5319 5965 -326 1912 160 106 5 chr1 185404778 185405166 -96788498 - MSTA LTR MaLR 0 428 2 4769 164 23 23 chr1 185405166 185405489 -96788175 + L1MA8 LINE L1 5965 6287 -4 319 300 31 55 chr1 185405486 185405743 -96787921 + HAL1 LINE L1 2146 2396 -111 * 23 0 0 0 chr1 185405822 185405845 -96787819 + AT_rich Low_complexity Low_complexity 1 23 0 222 339 0 0 chr1 185406220 185406285 -96787379 - L2 LINE L2 -4 3268 3204 751 292 0 0 chr1 185409252 185409437 -96784227 + MER5A DNA MER1_type 5 189 0 227 286 29 0 chr1 185409441 185409511 -96784153 - MIR SINE MIR -170 92 21 219 341 0 0 chr1 185410027 185410109 -96783555 + GA-rich Low_complexity Low_complexity 1 82 0 198 359 207 15 chr1 185410894 185411092 -96782572 + MIR SINE MIR 27 262 0 433 316 39 43 chr1 185411535 185411766 -96781898 - MIR SINE MIR -9 253 24 2363 78 17 0 chr1 185412083 185412379 -96781285 + AluY SINE Alu 1 301 -10 21 0 0 0 chr1 185412537 185412558 -96781106 + AT_rich Low_complexity Low_complexity 1 21 0 1210 176 50 17 chr1 185413128 185413430 -96780234 + L1MA8 LINE L1 5980 6291 0 180 268 49 89 chr1 185413812 185413935 -96779729 + L3 LINE CR1 1459 1576 -1 743 354 131 28 chr1 185414994 185415840 -96777824 - L2 LINE L2 -8 3264 2358 834 308 87 35 chr1 185416130 185416769 -96776895 + L2 LINE L2 2654 3313 0 621 246 11 77 chr1 185416913 185417096 -96776568 - MER5B DNA MER1_type -7 171 1 1990 121 0 0 chr1 185417425 185417697 -96775967 - AluSx SINE Alu -14 298 27 272 344 25 25 chr1 185419456 185419619 -96774045 + L3 LINE CR1 1403 1565 -12 264 283 26 6 chr1 185419846 185419922 -96773742 - MIR3 SINE MIR -36 172 95 264 271 24 24 chr1 185420658 185420743 -96772921 + MIR SINE MIR 60 144 -118 448 304 40 53 chr1 185421291 185421518 -96772146 + MIR SINE MIR 21 244 -18 1024 281 77 29 chr1 185421708 185422152 -96771512 + Tigger8 DNA MER2_type 157 621 -45 983 242 14 5 chr1 185423627 185423838 -96769826 - MER58A DNA MER1_type -2 222 10 1221 317 19 42 chr1 185424231 185424809 -96768855 - HERV16 LTR ERVL -1075 4579 4015 1264 284 113 49 chr1 185424997 185425624 -96768040 - HERV16 LTR ERVL -2724 2272 1606 515 336 63 5 chr1 185425650 185425873 -96767791 - HERV16 LTR ERVL -3518 1478 1243 181 327 85 48 chr1 185425888 185426053 -96767611 - L2 LINE L2 -250 3022 2852 528 338 15 15 chr1 185426755 185426959 -96766705 - L3 LINE CR1 -11 1566 1363 1729 117 4 15 chr1 185427529 185427793 -96765871 - Tigger7 DNA MER2_type 0 2491 2231 231 250 0 18 chr1 185427790 185427846 -96765818 - Tigger7 DNA MER2_type -2432 55 1 * 1372 214 72 43 chr1 185427849 185428265 -96765399 - MER39 LTR ERV1 -23 684 257 1453 98 25 0 chr1 185428605 185428808 -96764856 + AluSg/x SINE Alu 84 291 -19 220 344 45 32 chr1 185428946 185429100 -96764564 + MIR SINE MIR 52 207 -55 1181 259 121 26 chr1 185429174 185429638 -96764026 - LTR33A LTR ERVL -2 521 14 1384 116 0 0 chr1 185429773 185429988 -96763676 - L1MA2 LINE L1 0 6304 6090 248 348 74 30 chr1 185431604 185431739 -96761925 - MIR3 SINE MIR -11 197 57 265 364 34 0 chr1 185432499 185432617 -96761047 + MIR SINE MIR 70 191 -71 312 302 188 7 chr1 185433172 185433321 -96760343 - MLT1K LTR MaLR -346 242 67 235 352 57 19 chr1 185433450 185433609 -96760055 - MIR3 SINE MIR -3 205 41 282 29 0 0 chr1 185435341 185435376 -96758288 + (TG)n Simple_repeat Simple_repeat 2 36 0 962 194 71 82 chr1 185435571 185435911 -96757753 + L1MB8 LINE L1 3397 3732 -2414 2441 237 23 13 chr1 185435912 185436596 -96757068 + L1MB8 LINE L1 4043 4733 -1413 14781 189 29 34 chr1 185436609 185437103 -96756561 - L1MA4 LINE L1 -3 6479 5984 360 0 0 0 chr1 185437103 185437143 -96756521 + (TG)n Simple_repeat Simple_repeat 2 41 0 14781 189 29 34 chr1 185437143 185438094 -96755570 - L1MA4 LINE L1 -498 5984 5029 2411 57 0 0 chr1 185438094 185438391 -96755273 + AluY SINE Alu 1 297 -14 14781 189 29 34 chr1 185438391 185439960 -96753704 - L1MA4 LINE L1 -1453 5029 3453 2075 118 0 3 chr1 185439960 185440247 -96753417 - AluSc SINE Alu -23 286 1 14781 189 29 34 chr1 185440247 185441702 -96751962 - L1MA4 LINE L1 -3029 3453 1992 2052 98 37 7 chr1 185441702 185441998 -96751666 + AluSq SINE Alu 1 305 -8 14781 189 29 34 chr1 185441998 185444045 -96749619 - L1MA4 LINE L1 -4490 1992 4 3213 195 72 45 chr1 185444059 185444741 -96748923 + L1MB8 LINE L1 4730 5392 -786 1691 141 14 41 chr1 185444741 185444885 -96748779 + AluSx SINE Alu 1 147 -165 2054 33 49 0 chr1 185444885 185445130 -96748534 + AluY SINE Alu 39 295 -16 1691 141 14 41 chr1 185445130 185445305 -96748359 + AluSx SINE Alu 147 312 0 3213 195 72 45 chr1 185445305 185445970 -96747694 + L1MB8 LINE L1 5392 6107 -71 2400 156 14 24 chr1 185445977 185446750 -96746914 - Ricksha DNA DNA -20 3231 2403 9856 149 29 8 chr1 185446778 185448384 -96745280 - Ricksha DNA DNA -966 2280 640 4213 260 83 27 chr1 185448385 185451325 -96742339 - L1 LINE L1 -2715 4452 1625 1307 314 41 16 chr1 185451601 185452088 -96741576 - L1 LINE L1 -6621 547 49 421 291 94 61 chr1 185453903 185454969 -96738695 + L1ME3A LINE L1 1105 2237 -4159 907 254 114 74 chr1 185455115 185456490 -96737174 + L1ME3A LINE L1 2218 3787 -2428 995 279 62 17 chr1 185456508 185457042 -96736622 + L1ME3A LINE L1 4147 4704 -1511 24 77 0 0 chr1 185457073 185457125 -96736539 + AT_rich Low_complexity Low_complexity 1 52 0 736 134 18 0 chr1 185457125 185457253 -96736411 + L1MB1 LINE L1 5782 5895 -273 446 265 74 21 chr1 185457386 185457575 -96736089 - LTR43 LTR ERV1 -247 355 157 1045 190 158 27 chr1 185457752 185458015 -96735649 + L1MB1 LINE L1 5885 6178 -11 962 176 73 10 chr1 185458159 185458363 -96735301 + U3 snRNA snRNA 1 217 0 939 240 131 73 chr1 185458363 185458647 -96735017 + L1ME3A LINE L1 5414 5680 -559 2240 110 21 42 chr1 185458647 185459030 -96734634 + THE1C LTR MaLR 1 375 0 939 240 131 73 chr1 185459030 185459319 -96734345 + L1ME3A LINE L1 5680 6020 -219 358 279 7 29 chr1 185459347 185459487 -96734177 + L1ME3A LINE L1 6098 6234 -5 21 36 0 0 chr1 185459511 185459539 -96734125 + AT_rich Low_complexity Low_complexity 1 28 0 361 336 51 14 chr1 185459637 185459854 -96733810 - L1ME4a LINE L1 -218 5903 5679 1064 184 133 106 chr1 185460346 185460707 -96732957 + MLT2D LTR ERVL 1 375 -39 189 0 0 0 chr1 185460707 185460728 -96732936 + (CATA)n Simple_repeat Simple_repeat 4 24 0 1064 184 133 106 chr1 185460728 185460763 -96732901 + MLT2D LTR ERVL 375 408 -6 545 163 10 0 chr1 185461498 185461596 -96732068 - MER53 DNA DNA 0 189 91 2311 176 134 2 chr1 185461852 185462307 -96731357 - MLT2B1 LTR ERVL 0 520 6 216 319 86 17 chr1 185462713 185462829 -96730835 + MIR SINE MIR 22 145 -63 22 56 0 0 chr1 185463550 185463586 -96730078 + AT_rich Low_complexity Low_complexity 1 36 0 197 427 77 0 chr1 185463620 185463737 -96729927 + MIR SINE MIR 16 141 -67 21 0 0 0 chr1 185463903 185463924 -96729740 + AT_rich Low_complexity Low_complexity 1 21 0 425 318 104 40 chr1 185464598 185464944 -96728720 + LTR67 LTR ERVL 184 551 -6 582 269 27 59 chr1 185465410 185465596 -96728068 - MER5A DNA MER1_type -1 188 9 509 360 159 20 chr1 185465595 185465763 -96727901 - L2 LINE L2 -1339 1975 1832 * 2498 41 0 31 chr1 185465763 185466080 -96727584 + AluY SINE Alu 1 307 -4 509 360 159 20 chr1 185466080 185466708 -96726956 - L2 LINE L2 -1482 1832 1068 251 283 175 8 chr1 185467439 185467559 -96726105 + L2 LINE L2 2755 2894 -420 286 211 60 82 chr1 185467620 185467785 -96725879 + MLT1J1 LTR MaLR 336 440 -6 487 257 64 16 chr1 185467792 185467979 -96725685 + L2 LINE L2 3116 3311 -2 2327 88 7 0 chr1 185469432 185469728 -96723936 + AluSq SINE Alu 1 298 -15 3856 106 26 30 chr1 185470143 185470747 -96722917 - LTR43 LTR ERV1 0 602 1 1731 238 60 15 chr1 185471098 185471564 -96722100 - MLT1D LTR MaLR -18 487 1 7604 23 5 0 chr1 185471737 185472879 -96720785 - L1PA3 LINE L1 -2 6153 5013 22 0 0 0 chr1 185472917 185472939 -96720725 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr1 185473375 185473412 -96720252 + AT_rich Low_complexity Low_complexity 1 37 0 1350 208 49 0 chr1 185473611 185473876 -96719788 + AluJo SINE Alu 1 278 -34 1960 127 61 28 chr1 185473876 185474239 -96719425 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr1 185474248 185474288 -96719376 + AT_rich Low_complexity Low_complexity 1 40 0 286 303 0 0 chr1 185474775 185474851 -96718813 + MER20B DNA MER1_type 18 93 -690 1530 248 34 24 chr1 185474901 185475406 -96718258 + MER20B DNA MER1_type 189 698 -85 23 0 0 0 chr1 185475980 185476003 -96717661 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr1 185476059 185476092 -96717572 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr1 185477407 185477437 -96716227 + AT_rich Low_complexity Low_complexity 1 30 0 1762 145 25 3 chr1 185477901 185478183 -96715481 + AluJb SINE Alu 1 288 -24 191 317 0 50 chr1 185480095 185480155 -96713509 + MIR3 SINE MIR 105 161 -47 524 264 47 14 chr1 185480156 185480304 -96713360 + MER106B DNA MER1_type 3 155 -904 1265 127 5 11 chr1 185482501 185482690 -96710974 + Tigger4(Zombi) DNA MER2_type 1 188 -2543 1713 160 96 23 chr1 185482705 185483048 -96710616 + Tigger4(Zombi) DNA MER2_type 2359 2726 -5 27 0 0 0 chr1 185483589 185483616 -96710048 + AT_rich Low_complexity Low_complexity 1 27 0 2155 119 26 52 chr1 185483723 185484108 -96709556 + THE1C LTR MaLR 1 375 0 437 283 137 32 chr1 185484144 185484492 -96709172 + MLT1J2 LTR MaLR 64 438 -8 237 239 14 14 chr1 185484844 185484915 -96708749 + GA-rich Low_complexity Low_complexity 2 72 0 21 0 0 0 chr1 185485610 185485631 -96708033 + AT_rich Low_complexity Low_complexity 1 21 0 267 337 41 0 chr1 185485843 185485941 -96707723 - L2 LINE L2 0 3272 3171 10398 92 23 8 chr1 185486720 185487136 -96706528 + L1P3 LINE L1 2 410 -6051 216 0 0 0 chr1 185487136 185487160 -96706504 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 10398 92 23 8 chr1 185487160 185488199 -96705465 + L1P3 LINE L1 410 1479 -4982 1724 73 0 0 chr1 185488187 185488433 -96705231 + L1P3 LINE L1 3223 3468 -2993 * 619 129 0 0 chr1 185488429 185488522 -96705142 + L1P3 LINE L1 3830 3922 -2539 * 5370 229 50 48 chr1 185488523 185490516 -96703148 - L1 LINE L1 -2616 3734 1745 1755 124 3 106 chr1 185490516 185490846 -96702818 + AluSq SINE Alu 1 296 -7 5370 229 50 48 chr1 185490846 185491201 -96702463 - L1 LINE L1 -4605 1745 1392 2197 106 10 0 chr1 185491201 185491502 -96702162 - AluSp SINE Alu -9 304 1 5370 229 50 48 chr1 185491502 185491829 -96701835 - L1 LINE L1 -4958 1392 1461 8629 50 4 10 chr1 185491829 185492905 -96700759 + MER11C LTR ERVK 1 1069 -2 5370 229 50 48 chr1 185492905 185493515 -96700149 - L1 LINE L1 -4888 1462 854 2121 301 31 21 chr1 185493693 185494539 -96699125 - L1 LINE L1 -5522 759 1 998 257 63 2 chr1 185494537 185494993 -96698671 - L1ME LINE L1 -720 5442 4951 * 195 42 0 0 chr1 185495043 185495067 -96698597 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 185495434 185495455 -96698209 + AT_rich Low_complexity Low_complexity 1 21 0 2704 40 10 3 chr1 185495460 185496176 -96697488 - L1PA5 LINE L1 -3 6151 5294 20445 164 45 15 chr1 185496377 185499001 -96694663 + L1MA3 LINE L1 14 2559 -5165 207 0 0 0 chr1 185499001 185499024 -96694640 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 20445 164 45 15 chr1 185499024 185501922 -96691742 + L1MA3 LINE L1 2559 5871 -1853 3424 119 6 6 chr1 185501922 185502433 -96691231 + MER9 LTR ERVK 1 511 0 20445 164 45 15 chr1 185502433 185504320 -96689344 + L1MA3 LINE L1 5871 7701 -23 242 297 171 0 chr1 185504735 185504846 -96688818 + MER103 DNA DNA 36 165 -1 1216 303 112 15 chr1 185506758 185507478 -96686186 - L2 LINE L2 -2 3311 2530 213 279 47 0 chr1 185507742 185507828 -96685836 + (CA)n Simple_repeat Simple_repeat 1 90 0 23 0 0 0 chr1 185509347 185509370 -96684294 + AT_rich Low_complexity Low_complexity 1 23 0 1622 126 14 22 chr1 185509538 185509815 -96683849 - L1PA16 LINE L1 -9 6157 5883 1259 269 55 117 chr1 185510644 185511205 -96682459 + L2 LINE L2 1211 1805 -1509 2598 55 0 0 chr1 185511205 185511516 -96682148 - AluY SINE Alu 0 311 1 1259 269 55 117 chr1 185511516 185512310 -96681354 + L2 LINE L2 1805 2482 -832 184 214 0 54 chr1 185513155 185513211 -96680453 + L2 LINE L2 2473 2525 -789 * 410 229 83 28 chr1 185513201 185513310 -96680354 + L2 LINE L2 3199 3313 0 1009 204 62 0 chr1 185516219 185516430 -96677234 + MER58A DNA MER1_type 1 224 0 612 329 185 14 chr1 185516555 185516761 -96676903 - L2 LINE L2 0 3313 3144 1026 179 86 51 chr1 185516761 185516838 -96676826 - MER33 DNA MER1_type -2261 324 251 1445 191 14 24 chr1 185516838 185517131 -96676533 + AluJb SINE Alu 2 291 -21 1026 179 86 51 chr1 185517131 185517366 -96676298 - MER33 DNA MER1_type -2334 251 1 612 329 185 14 chr1 185517366 185517791 -96675873 - L2 LINE L2 -169 3144 2586 291 252 19 56 chr1 185517837 185517944 -96675720 + MIR SINE MIR 160 262 0 1184 287 71 24 chr1 185518609 185519311 -96674353 - L2 LINE L2 -4 3309 2577 283 229 169 25 chr1 185521195 185521313 -96672351 + MIR3 SINE MIR 20 154 -54 560 251 81 28 chr1 185522731 185522952 -96670712 - MIR SINE MIR 0 262 31 1678 160 14 10 chr1 185523016 185523304 -96670360 - AluJb SINE Alu -18 294 6 271 244 23 35 chr1 185523338 185523424 -96670240 - MER112 DNA MER1_type -109 151 67 234 269 77 0 chr1 185523513 185523591 -96670073 + L2 LINE L2 3176 3259 -54 415 262 113 12 chr1 185524214 185524470 -96669194 - L1ME4a LINE L1 -26 6095 5814 8487 156 48 124 chr1 185524483 185526787 -96666877 + L1PA7 LINE L1 12 2141 -4005 17527 103 10 38 chr1 185526787 185530271 -96663393 + L1PA7 LINE L1 2697 6150 -4 1068 279 86 11 chr1 185530385 185530744 -96662920 + L2 LINE L2 1278 1663 -1651 479 284 101 59 chr1 185530866 185531172 -96662492 - MLT1H LTR MaLR 0 549 231 210 128 0 0 chr1 185531915 185531954 -96661710 + (A)n Simple_repeat Simple_repeat 1 39 0 534 267 70 12 chr1 185532367 185532539 -96661125 + MIR SINE MIR 20 201 -61 2414 65 3 3 chr1 185532540 185532847 -96660817 + AluY SINE Alu 1 307 -4 345 291 72 24 chr1 185532892 185533016 -96660648 + MIR SINE MIR 38 174 -34 2212 97 0 10 chr1 185534751 185535050 -96658614 - AluY SINE Alu -2 309 14 9768 193 16 14 chr1 185535108 185537995 -96655669 + L1PA16 LINE L1 3123 6011 -155 297 283 83 35 chr1 185538323 185538448 -96655216 - L2 LINE L2 -8 3305 3171 13787 25 0 0 chr1 185538448 185540854 -96652810 + L1PA3 LINE L1 3739 6152 -3 297 283 83 35 chr1 185540854 185540873 -96652791 - L2 LINE L2 -142 3171 3154 200 292 0 21 chr1 185540892 185540988 -96652676 - L2 LINE L2 -120 3193 3100 363 250 98 64 chr1 185540994 185541182 -96652482 + L1ME LINE L1 4358 4557 -1589 2468 98 14 0 chr1 185541182 185541539 -96652125 + L1PA13 LINE L1 5801 6162 -1 363 250 98 64 chr1 185541539 185541586 -96652078 + L1ME LINE L1 4557 4601 -1545 330 217 60 0 chr1 185541659 185541742 -96651922 + L1ME LINE L1 4755 4842 -1304 411 275 21 0 chr1 185541835 185541977 -96651687 + (TA)n Simple_repeat Simple_repeat 1 145 0 308 273 91 9 chr1 185542049 185542159 -96651505 + L1ME LINE L1 5083 5201 -945 855 237 110 86 chr1 185542169 185542713 -96650951 + L1ME LINE L1 5254 5810 -352 881 294 179 17 chr1 185542714 185543249 -96650415 - L2 LINE L2 -376 2938 2317 727 365 85 31 chr1 185543339 185544233 -96649431 + L2 LINE L2 1892 2833 -481 786 320 77 24 chr1 185544438 185544813 -96648851 + L1M3c LINE L1 5 399 -5742 246 229 0 0 chr1 185544863 185544911 -96648753 + L1M3c LINE L1 820 867 -5274 236 288 163 0 chr1 185544973 185545053 -96648611 + L1 LINE L1 329 421 -5720 1882 242 94 34 chr1 185545275 185546246 -96647418 + L1 LINE L1 906 1916 -4295 513 216 85 45 chr1 185546254 185546430 -96647234 + L1 LINE L1 4159 4341 -1869 317 314 81 24 chr1 185547409 185547533 -96646131 + MIR SINE MIR 131 261 -1 3247 114 22 67 chr1 185547560 185548112 -96645552 + MER1A DNA MER1_type 1 527 0 730 257 34 64 chr1 185548294 185548559 -96645105 + MLT1J LTR MaLR 220 476 -35 325 316 0 0 chr1 185549160 185549255 -96644409 + L2 LINE L2 3180 3274 -39 337 286 88 78 chr1 185550433 185550958 -96642706 - L1MC5 LINE L1 -162 7799 7270 226 282 0 47 chr1 185551388 185551473 -96642191 + MIR3 SINE MIR 123 203 -5 234 0 0 0 chr1 185551754 185551780 -96641884 + (CA)n Simple_repeat Simple_repeat 1 26 0 493 316 27 11 chr1 185551974 185552161 -96641503 + L3 LINE CR1 1190 1379 -198 414 232 13 7 chr1 185553098 185553253 -96640411 + (CA)n Simple_repeat Simple_repeat 1 156 0 353 322 7 41 chr1 185553270 185553416 -96640248 + MIR SINE MIR 51 191 -71 337 357 54 0 chr1 185555432 185555561 -96638103 + MIR3 SINE MIR 63 198 -10 223 311 10 58 chr1 185555836 185555939 -96637725 + MIR SINE MIR 78 175 -87 888 257 24 73 chr1 185556203 185556491 -96637173 - Charlie8 DNA MER1_type -2143 274 1 483 302 29 47 chr1 185557097 185557269 -96636395 + MIR3 SINE MIR 17 185 -23 235 234 27 197 chr1 185558003 185558191 -96635473 - L2 LINE L2 0 3272 3117 219 269 0 0 chr1 185558996 185559048 -96634616 - MIR SINE MIR -37 225 174 28 99 0 0 chr1 185559162 185559253 -96634411 + AT_rich Low_complexity Low_complexity 1 91 0 185 80 0 0 chr1 185559547 185559572 -96634092 + MIR SINE MIR 82 106 -102 492 301 141 0 chr1 185559870 185560069 -96633595 - MIR SINE MIR -2 260 34 229 316 143 0 chr1 185560183 185560281 -96633383 + L2 LINE L2 3158 3269 -3 21 36 0 0 chr1 185560689 185560717 -96632947 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 185561038 185561059 -96632605 + AT_rich Low_complexity Low_complexity 1 21 0 1391 104 48 52 chr1 185561345 185561444 -96632220 - MER30 DNA MER1_type 0 230 132 2202 122 3 0 chr1 185561444 185561747 -96631917 + AluSq SINE Alu 1 304 -9 1391 104 48 52 chr1 185561747 185561878 -96631786 - MER30 DNA MER1_type -98 132 1 277 263 25 25 chr1 185562543 185562623 -96631041 - MLT1J LTR MaLR -42 469 390 213 265 48 0 chr1 185562712 185562795 -96630869 + GA-rich Low_complexity Low_complexity 2 88 0 412 340 6 6 chr1 185563329 185563488 -96630176 - ERVL LTR ERVL -392 5372 5214 1431 307 82 50 chr1 185563609 185564514 -96629150 - ERVL LTR ERVL -2589 3065 2098 5195 162 16 28 chr1 185564843 185566432 -96627232 - L1PB1 LINE L1 -1 6150 4592 634 261 116 15 chr1 185567254 185567453 -96626211 - MLT1J LTR MaLR -235 276 58 1701 235 79 67 chr1 185567483 185568227 -96625437 + MER20B DNA MER1_type 30 782 -1 22 0 0 0 chr1 185568874 185568896 -96624768 + AT_rich Low_complexity Low_complexity 1 22 0 583 244 72 31 chr1 185570369 185570562 -96623102 + MIR SINE MIR 62 262 0 201 154 0 0 chr1 185572312 185572351 -96621313 + CT-rich Low_complexity Low_complexity 3 41 0 1901 154 14 11 chr1 185572640 185573003 -96620661 - L1MA6 LINE L1 0 6300 5937 276 254 0 30 chr1 185573230 185573297 -96620367 + tRNA-Ala-GCG tRNA tRNA 1 65 -10 441 0 0 0 chr1 185573629 185573678 -96619986 + (TC)n Simple_repeat Simple_repeat 2 50 0 234 81 0 0 chr1 185573679 185573716 -96619948 + (CA)n Simple_repeat Simple_repeat 2 38 0 741 93 19 0 chr1 185574295 185574402 -96619262 - AluSq/x SINE Alu -203 109 1 1163 190 0 23 chr1 185574417 185574638 -96619026 + L1PB4 LINE L1 5939 6154 -2 306 253 0 0 chr1 185574640 185574735 -96618929 + L1MB1 LINE L1 4317 4411 -1735 * 4353 185 36 35 chr1 185574723 185576012 -96617652 + L1MB1 LINE L1 4874 6161 -28 183 156 0 0 chr1 185576018 185576050 -96617614 + GA-rich Low_complexity Low_complexity 2 33 0 23 68 0 0 chr1 185576295 185576339 -96617325 + AT_rich Low_complexity Low_complexity 1 44 0 305 298 43 0 chr1 185576341 185576435 -96617229 + MLT1J LTR MaLR 1 98 -413 675 299 88 64 chr1 185576446 185576988 -96616676 - MLT1G LTR MaLR -12 543 1 1626 219 128 67 chr1 185577030 185577268 -96616396 + L1M4 LINE L1 3691 3913 -2233 1223 195 101 52 chr1 185577268 185577616 -96616048 + MLT1A1 LTR MaLR 1 365 0 1626 219 128 67 chr1 185577616 185578242 -96615422 + L1M4 LINE L1 3913 4608 -1538 * 3211 194 129 4 chr1 185578235 185579178 -96614486 + L1MC3 LINE L1 6677 7783 -2 2444 244 46 57 chr1 185579281 185580286 -96613378 + L1M3e LINE L1 1571 2549 -5017 234 81 0 0 chr1 185580286 185580323 -96613341 + (CA)n Simple_repeat Simple_repeat 2 38 0 2444 244 46 57 chr1 185580323 185580908 -96612756 + L1M3e LINE L1 2549 3139 -4427 463 227 94 30 chr1 185580909 185581112 -96612552 + L1M3e LINE L1 2969 3184 -4381 4602 221 25 32 chr1 185581213 185582282 -96611382 + L1M3e LINE L1 3966 5030 -2535 1938 125 4 4 chr1 185582282 185582590 -96611074 + AluSp SINE Alu 4 311 0 4602 221 25 32 chr1 185582590 185582781 -96610883 + L1M3e LINE L1 5030 5221 -2344 276 141 203 0 chr1 185582782 185582881 -96610783 + AluS SINE Alu 222 295 0 273 157 118 0 chr1 185582911 185582962 -96610702 + MLT1J LTR MaLR 379 435 -76 468 301 172 0 chr1 185584132 185584341 -96609323 + MIR SINE MIR 4 248 -14 22 0 0 0 chr1 185585345 185585367 -96608297 + AT_rich Low_complexity Low_complexity 1 22 0 1441 215 28 53 chr1 185585991 185586349 -96607315 - MLT1A1 LTR MaLR -7 358 10 496 161 13 2 chr1 185586454 185586545 -96607119 - LTR12 LTR ERV1 0 714 389 367 262 24 51 chr1 185586545 185586683 -96606981 - LTR30 LTR ERV1 -79 643 377 975 156 85 49 chr1 185586739 185586963 -96606701 - LTR12 LTR ERV1 -480 234 3 21 71 0 0 chr1 185587016 185587058 -96606606 + AT_rich Low_complexity Low_complexity 1 42 0 2335 215 12 18 chr1 185587684 185588251 -96605413 - L1MB8 LINE L1 -1 6177 5614 286 119 0 0 chr1 185588251 185588293 -96605371 - MLT2B2 LTR ERVL 0 515 474 225 65 0 0 chr1 185588293 185588324 -96605340 + (CA)n Simple_repeat Simple_repeat 2 32 0 6133 156 24 13 chr1 185588326 185589371 -96604293 - ERVL LTR ERVL -350 5414 4359 * 8660 178 30 0 chr1 185589367 185590860 -96602804 - ERVL LTR ERVL -2182 3582 2045 2431 207 28 2 chr1 185590960 185591433 -96602231 - ERVL LTR ERVL -3961 1803 1319 4809 175 7 6 chr1 185591737 185592740 -96600924 - L1PB4 LINE L1 -3 6153 5150 4916 230 37 20 chr1 185592744 185593814 -96599850 - ERVL LTR ERVL -4451 1313 225 295 221 13 13 chr1 185593860 185593937 -96599727 - Ricksha DNA DNA -2328 918 842 3317 227 40 35 chr1 185593987 185595073 -96598591 - L1PB4 LINE L1 -2492 3654 2563 1545 255 38 36 chr1 185595132 185595709 -96597955 - L1M4c LINE L1 -4606 2353 1776 1009 102 0 0 chr1 185595719 185595847 -96597817 - AluSg/x SINE Alu -17 293 166 1165 174 24 99 chr1 185595954 185596327 -96597337 - L1M4c LINE L1 -5310 1549 1205 2409 290 51 48 chr1 185596872 185597786 -96595878 - L1M4c LINE L1 -5914 945 29 1017 148 0 0 chr1 185598202 185598357 -96595307 + AluSg/x SINE Alu 152 306 -6 652 336 62 37 chr1 185598501 185598933 -96594731 + L2 LINE L2 1695 2137 -1177 668 347 121 16 chr1 185599122 185599744 -96593920 + L2 LINE L2 493 1179 -2135 231 366 10 0 chr1 185599748 185599849 -96593815 + L2 LINE L2 1329 1430 -1884 523 312 114 67 chr1 185599849 185600545 -96593119 + L2 LINE L2 2576 3298 -15 521 339 63 29 chr1 185600605 185601078 -96592586 + L2 LINE L2 2430 3272 0 26 50 0 0 chr1 185601927 185601967 -96591697 + AT_rich Low_complexity Low_complexity 1 40 0 185 440 12 0 chr1 185602051 185602135 -96591529 - L2 LINE L2 -197 3075 2991 465 332 88 30 chr1 185602383 185602747 -96590917 - L3 LINE CR1 -13 1564 1180 427 310 94 35 chr1 185603940 185604143 -96589521 + MIR SINE MIR 48 262 0 180 369 27 100 chr1 185604831 185605132 -96588532 - L2 LINE L2 0 3272 2994 400 237 23 61 chr1 185606518 185606649 -96587015 + MLT1J LTR MaLR 268 393 -118 24 32 0 0 chr1 185606930 185606961 -96586703 + AT_rich Low_complexity Low_complexity 1 31 0 5823 150 27 6 chr1 185606961 185607983 -96585681 - L1MA5 LINE L1 -3 6297 5254 534 163 0 0 chr1 185608494 185608586 -96585078 - L1M4 LINE L1 -431 5753 5662 452 268 10 62 chr1 185608585 185608779 -96584885 - L1MA5 LINE L1 -1811 4335 4152 * 1045 233 136 36 chr1 185608887 185609217 -96584447 - MLT1A1 LTR MaLR 0 365 3 1641 276 26 38 chr1 185609226 185609447 -96584217 - L1M4 LINE L1 -2076 4070 3848 2936 9 0 0 chr1 185609447 185609765 -96583899 - AluYb8 SINE Alu 0 318 1 1641 276 26 38 chr1 185609765 185610301 -96583363 - L1M4 LINE L1 -2298 3848 3322 429 70 0 0 chr1 185610939 185610996 -96582668 + (CA)n Simple_repeat Simple_repeat 2 58 0 246 128 0 0 chr1 185610996 185611035 -96582629 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr1 185611122 185611144 -96582520 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr1 185611359 185611393 -96582271 + (TA)n Simple_repeat Simple_repeat 1 34 0 2518 62 3 12 chr1 185612056 185612392 -96581272 + L1PA8 LINE L1 5833 6165 -7 22 56 0 0 chr1 185614373 185614409 -96579255 + AT_rich Low_complexity Low_complexity 1 36 0 374 273 78 23 chr1 185614688 185614816 -96578848 - MER5B DNA MER1_type -42 136 2 218 274 26 97 chr1 185614956 185615069 -96578595 + L2 LINE L2 3168 3272 0 180 231 0 0 chr1 185616060 185616112 -96577552 + (TG)n Simple_repeat Simple_repeat 1 52 0 611 135 10 0 chr1 185616708 185616812 -96576852 - MER53 DNA DNA -84 105 1 232 289 0 0 chr1 185616814 185616866 -96576798 + L2 LINE L2 3261 3312 -1 431 288 205 15 chr1 185617215 185617420 -96576244 + MIR SINE MIR 15 258 -4 416 171 0 11 chr1 185618860 185618948 -96574716 + CT-rich Low_complexity Low_complexity 2 88 0 292 334 126 63 chr1 185620240 185620668 -96572996 + L2 LINE L2 2334 2788 -526 24 0 0 0 chr1 185621454 185621478 -96572186 + AT_rich Low_complexity Low_complexity 1 24 0 367 289 268 16 chr1 185621517 185621711 -96571953 - MIR SINE MIR -15 247 5 290 173 25 178 chr1 185621897 185622094 -96571570 - L1MC4 LINE L1 0 8042 7876 4181 226 19 36 chr1 185622105 185623085 -96570579 + L1PA13 LINE L1 2 965 -5822 765 350 23 52 chr1 185623118 185623681 -96569983 + L2 LINE L2 2301 2847 -467 267 390 18 84 chr1 185623730 185624110 -96569554 + L2 LINE L2 2918 3272 0 362 137 42 0 chr1 185624720 185624815 -96568849 + (TA)n Simple_repeat Simple_repeat 2 100 0 571 294 59 14 chr1 185627050 185627271 -96566393 + MIR SINE MIR 29 259 -3 288 345 84 7 chr1 185627769 185627911 -96565753 - MER91A DNA MER1_type -30 166 14 13300 181 27 35 chr1 185628025 185628976 -96564688 - L1MA1 LINE L1 0 7721 6764 2002 133 0 0 chr1 185628976 185629261 -96564403 + AluSx SINE Alu 14 298 -14 13300 181 27 35 chr1 185629261 185634408 -96559256 - L1MA1 LINE L1 -957 6764 1725 225 0 0 0 chr1 185634408 185634433 -96559231 + (TC)n Simple_repeat Simple_repeat 2 26 0 13300 181 27 35 chr1 185634433 185634860 -96558804 - L1MA1 LINE L1 -5996 1725 1296 1618 231 94 7 chr1 185634866 185634952 -96558712 - L1MA1 LINE L1 -7100 465 388 2140 122 0 0 chr1 185634952 185635255 -96558409 - AluSc SINE Alu -6 303 1 1618 231 94 7 chr1 185635255 185635584 -96558080 - L1MA1 LINE L1 -7177 388 14 619 304 65 16 chr1 185635665 185635912 -96557752 + MIR SINE MIR 1 259 -3 211 313 15 0 chr1 185636234 185636301 -96557363 - L2 LINE L2 -8 3264 3197 1230 309 88 42 chr1 185636408 185638085 -96555579 - L1M4 LINE L1 -873 5273 3520 10725 226 47 15 chr1 185638615 185639537 -96554127 + ERVL-C2 LTR ERVL 3008 3899 -1865 2109 128 0 0 chr1 185639537 185639843 -96553821 + AluSg SINE Alu 1 306 -4 10725 226 47 15 chr1 185639843 185641554 -96552110 + ERVL-C2 LTR ERVL 3899 5756 -8 332 271 234 60 chr1 185641554 185641601 -96552063 + MLT2C2 LTR ERVL 1 39 -425 401 238 123 16 chr1 185641601 185641723 -96551941 + MLT1E3 LTR MaLR 70 204 -420 332 271 234 60 chr1 185641723 185641934 -96551730 + MLT2C2 LTR ERVL 39 446 -18 231 233 58 23 chr1 185642340 185642426 -96551238 + MER53 DNA DNA 94 182 -7 * 373 214 60 0 chr1 185642358 185642442 -96551222 - MER53 DNA DNA -100 89 1 855 209 23 0 chr1 185642495 185642667 -96550997 - MER105 DNA DNA 0 204 29 262 328 25 16 chr1 185642733 185642855 -96550809 + L2 LINE L2 3187 3309 -4 233 261 67 34 chr1 185642961 185643080 -96550584 - L1 LINE L1 -1234 4912 4790 232 299 92 76 chr1 185643323 185643901 -96549763 - L1 LINE L1 -1954 4192 3606 921 314 63 30 chr1 185644043 185645001 -96548663 - L1 LINE L1 -2980 3166 2178 332 360 56 28 chr1 185645478 185645692 -96547972 + L1MEd LINE L1 328 547 -5572 200 100 25 0 chr1 185646322 185646362 -96547302 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 255 366 74 29 chr1 185646762 185646937 -96546727 + L2 LINE L2 3090 3272 0 2168 174 166 2 chr1 185648266 185648713 -96544951 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr1 185648794 185648816 -96544848 + AT_rich Low_complexity Low_complexity 1 22 0 467 224 30 0 chr1 185648829 185648963 -96544701 - MER103 DNA DNA -19 147 10 237 247 204 0 chr1 185649034 185649127 -96544537 - MIR3 SINE MIR -48 160 49 342 347 107 18 chr1 185649261 185649486 -96544178 + L3 LINE CR1 1332 1576 -1 21 0 0 0 chr1 185650214 185650235 -96543429 + AT_rich Low_complexity Low_complexity 1 21 0 638 269 29 18 chr1 185650540 185650711 -96542953 + MIR SINE MIR 3 175 -87 531 241 133 5 chr1 185650775 185650978 -96542686 + L1ME1 LINE L1 3579 3807 -2339 2088 173 23 0 chr1 185651002 185651354 -96542310 - THE1B LTR MaLR -2 362 3 10195 123 44 1 chr1 185651361 185652872 -96540792 - THE1B-int LTR MaLR -5 1575 1 1944 177 33 0 chr1 185652872 185653205 -96540459 - THE1B LTR MaLR 0 364 21 2388 224 61 40 chr1 185653205 185653792 -96539872 + L1ME1 LINE L1 3805 4415 -1731 3259 70 5 7 chr1 185653792 185654235 -96539429 + L1PA7 LINE L1 5713 6154 0 2388 224 61 40 chr1 185654235 185654430 -96539234 + L1ME1 LINE L1 4415 4604 -1542 * 2540 229 29 45 chr1 185654410 185654827 -96538837 + L1ME1 LINE L1 4976 5398 -768 1787 150 54 0 chr1 185654827 185655121 -96538543 + AluSg SINE Alu 1 310 0 2540 229 29 45 chr1 185655121 185655729 -96537935 + L1ME1 LINE L1 5398 5985 -181 607 192 13 13 chr1 185655839 185655990 -96537674 + L1MA10 LINE L1 6182 6332 -2 202 345 0 45 chr1 185656212 185656322 -96537342 + L2 LINE L2 2376 2480 -834 5626 140 20 40 chr1 185657490 185658687 -96534977 - L1MA9 LINE L1 0 6312 5141 1908 250 67 6 chr1 185658685 185659367 -96534297 - L1 LINE L1 -3411 3437 2720 * 377 214 90 0 chr1 185659358 185659447 -96534217 - L1 LINE L1 -4334 2515 2419 * 402 204 61 72 chr1 185659453 185659634 -96534030 - L1M4c LINE L1 -4085 2299 2121 280 237 35 26 chr1 185659648 185659762 -96533902 - L1M4c LINE L1 -4229 2155 2041 346 324 55 28 chr1 185660462 185660644 -96533020 + MIR SINE MIR 49 235 -27 216 309 37 0 chr1 185660761 185660842 -96532822 - L3b LINE CR1 -328 1255 1172 279 282 67 27 chr1 185662940 185663089 -96530575 + L1ME4a LINE L1 4458 4612 -1534 1050 174 0 0 chr1 185663325 185663503 -96530161 - AluSg/x SINE Alu -1 311 134 848 186 57 11 chr1 185663758 185664186 -96529478 - MER69 DNA AcHobo -9 2517 1999 * 1524 243 67 75 chr1 185664171 185664664 -96529000 - MER69 DNA AcHobo -656 570 82 407 345 7 7 chr1 185664692 185664840 -96528824 - MIR SINE MIR -112 150 3 21 0 0 0 chr1 185664958 185664979 -96528685 + AT_rich Low_complexity Low_complexity 1 21 0 492 242 184 42 chr1 185665031 185665390 -96528274 + L1ME4a LINE L1 5478 5887 -234 198 71 0 0 chr1 185665422 185665450 -96528214 + (CA)n Simple_repeat Simple_repeat 1 28 0 432 276 189 14 chr1 185666249 185666466 -96527198 + MIR SINE MIR 7 261 -1 314 263 0 13 chr1 185666609 185666685 -96526979 - MIR3 SINE MIR -9 199 125 2354 68 3 10 chr1 185667226 185667537 -96526127 - AluY SINE Alu -2 309 1 2031 186 74 17 chr1 185667780 185668252 -96525412 - Charlie4a DNA MER1_type -7 501 3 231 223 11 53 chr1 185668595 185668689 -96524975 + L1MC4 LINE L1 6616 6705 -1337 366 226 167 0 chr1 185668748 185668850 -96524814 + L2 LINE L2 3187 3305 -8 399 291 48 30 chr1 185669674 185669839 -96523825 - L3 LINE CR1 -79 1498 1331 352 351 147 32 chr1 185670169 185670611 -96523053 - L3 LINE CR1 -344 1233 741 212 278 53 90 chr1 185671009 185671142 -96522522 + L2 LINE L2 2227 2354 -960 774 270 78 0 chr1 185671309 185671539 -96522125 - MIR SINE MIR -13 249 2 428 195 172 109 chr1 185671743 185671964 -96521700 - LTR16A1 LTR ERVL -105 352 118 232 154 0 0 chr1 185672436 185672475 -96521189 - U2 snRNA snRNA -149 39 1 17203 46 5 0 chr1 185672760 185674918 -96518746 + L1P LINE L1 2838 5005 -1141 * 39578 76 11 4 chr1 185674917 185680362 -96513302 - L1P2 LINE L1 -664 5490 4 411 272 162 0 chr1 185681361 185681534 -96512130 - HAL1b LINE L1 -749 599 399 192 77 0 0 chr1 185681884 185681910 -96511754 + (T)n Simple_repeat Simple_repeat 1 26 0 1660 173 57 23 chr1 185682352 185682705 -96510959 - MLT1A1 LTR MaLR 0 365 1 599 300 56 27 chr1 185682735 185682978 -96510686 + MIR SINE MIR 11 260 -2 3368 107 41 9 chr1 185683029 185683560 -96510104 + L1PA13 LINE L1 5615 6162 -1 2131 189 37 43 chr1 185683626 185684118 -96509546 - MLT1D LTR MaLR 0 505 17 282 125 0 0 chr1 185684788 185684836 -96508828 + (TG)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr1 185685607 185685631 -96508033 + AT_rich Low_complexity Low_complexity 1 24 0 258 260 0 0 chr1 185686367 185686440 -96507224 + (TA)n Simple_repeat Simple_repeat 2 74 0 581 250 15 39 chr1 185686488 185686692 -96506972 + Charlie5 DNA MER1_type 1 199 -2413 424 236 70 32 chr1 185686686 185686805 -96506859 + Charlie5 DNA MER1_type 2347 2475 -149 * 1387 238 84 47 chr1 185686805 185687292 -96506372 + MLT1D LTR MaLR 1 505 0 424 236 70 32 chr1 185687292 185687329 -96506335 + Charlie5 DNA MER1_type 2475 2509 -115 2319 111 22 33 chr1 185687366 185687734 -96505930 + THE1B LTR MaLR 1 364 0 181 245 38 19 chr1 185688516 185688569 -96505095 - MIR3 SINE MIR -46 162 109 1026 231 66 7 chr1 185688912 185689075 -96504589 - L1MA10 LINE L1 -1 6333 6144 180 77 0 0 chr1 185689075 185689101 -96504563 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1026 231 66 7 chr1 185689101 185689223 -96504441 - L1MA10 LINE L1 -190 6144 6031 * 2149 182 18 0 chr1 185689199 185689590 -96504074 + L1MA9 LINE L1 5642 6039 -273 1943 93 52 4 chr1 185689724 185690030 -96503634 + AluSx SINE Alu 3 321 0 212 363 65 77 chr1 185690257 185690593 -96503071 + L2 LINE L2 2936 3267 -5 217 295 0 13 chr1 185691524 185691602 -96502062 + GA-rich Low_complexity Low_complexity 3 79 0 1068 179 20 91 chr1 185691610 185691907 -96501757 - L1MA10 LINE L1 -117 6217 5942 919 171 44 49 chr1 185691905 185692110 -96501554 + L1 LINE L1 4703 4906 -1240 * 231 279 16 0 chr1 185692688 185692749 -96500915 - MIR3 SINE MIR -47 161 100 26 50 0 0 chr1 185692987 185693027 -96500637 + AT_rich Low_complexity Low_complexity 1 40 0 221 390 67 0 chr1 185693141 185693246 -96500418 - MIR3 SINE MIR -2 206 95 2324 142 2 78 chr1 185693327 185693786 -96499878 + L1MC1 LINE L1 5892 6315 -18 261 139 0 0 chr1 185693795 185693838 -96499826 + (TA)n Simple_repeat Simple_repeat 2 44 0 514 212 18 9 chr1 185694505 185694618 -96499046 + MER81 DNA DNA 1 114 0 361 290 10 10 chr1 185694618 185694718 -96498946 - MIR SINE MIR -79 129 30 431 273 31 8 chr1 185696014 185696142 -96497522 + MIR SINE MIR 132 262 0 291 274 132 51 chr1 185696565 185696762 -96496902 + L2 LINE L2 3099 3311 -2 2304 285 124 10 chr1 185696763 185697462 -96496202 - L2 LINE L2 -572 2742 1931 2157 103 0 14 chr1 185697462 185697795 -96495869 + AluSq SINE Alu 1 329 0 2304 285 124 10 chr1 185697795 185697921 -96495743 - L2 LINE L2 -1383 1931 1821 2314 246 68 18 chr1 185697921 185698638 -96495026 + L1ME2 LINE L1 5406 6158 -6 214 360 0 0 chr1 185698866 185698941 -96494723 + L2 LINE L2 2968 3042 -230 438 294 71 57 chr1 185698977 185699345 -96494319 - MLT1K LTR MaLR -2 586 214 322 342 63 13 chr1 185699557 185699715 -96493949 - MIR SINE MIR -26 236 71 1250 333 42 17 chr1 185699717 185700242 -96493422 - HERV16 LTR ERVL -3663 1333 796 308 302 35 35 chr1 185700437 185700553 -96493111 - L2 LINE L2 -19 3294 3179 3638 296 79 23 chr1 185700771 185702176 -96491488 + HERV16 LTR ERVL 1613 3096 -1900 821 325 89 40 chr1 185702287 185702971 -96490693 + HERV16 LTR ERVL 3237 3954 -1531 722 333 50 9 chr1 185703048 185703366 -96490298 + HERV16 LTR ERVL 4096 4426 -1228 770 319 51 21 chr1 185703676 185703803 -96489861 + LTR16A LTR ERVL 105 227 -223 712 245 141 0 chr1 185703803 185703987 -96489677 - MER63A DNA MER1_type 0 210 1 770 319 51 21 chr1 185703987 185704195 -96489469 + LTR16A LTR ERVL 227 450 0 1510 145 53 27 chr1 185705307 185705569 -96488095 - AluJb SINE Alu -39 273 5 2451 44 0 7 chr1 185705922 185706218 -96487446 + AluY SINE Alu 1 294 -17 234 288 38 38 chr1 185706793 185706925 -96486739 + MER117 DNA MER1_type 2 133 -64 521 253 5 31 chr1 185707235 185707429 -96486235 - L1MC5 LINE L1 -60 7901 7713 251 390 7 29 chr1 185709421 185709557 -96484107 + L3 LINE CR1 1375 1507 -70 * 872 311 149 19 chr1 185709552 185710244 -96483420 + L2 LINE L2 2434 3220 -93 263 239 68 43 chr1 185710376 185710493 -96483171 + L2 LINE L2 3184 3303 -10 336 213 149 138 chr1 185710647 185710821 -96482843 + LTR33 LTR ERVL 11 198 -323 2509 223 49 31 chr1 185711619 185712331 -96481333 - L1ME1 LINE L1 -15 6220 5496 2562 272 64 65 chr1 185712333 185712445 -96481219 - L1ME1 LINE L1 -4240 2156 2045 429 36 0 0 chr1 185712445 185712500 -96481164 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2076 106 0 3 chr1 185712502 185712784 -96480880 - AluSp SINE Alu -32 281 1 2562 272 64 65 chr1 185712784 185714010 -96479654 - L1ME1 LINE L1 -4352 2044 815 2047 169 14 14 chr1 185714010 185714371 -96479293 - MLT1A1 LTR MaLR -4 361 1 2562 272 64 65 chr1 185714371 185714903 -96478761 - L1ME1 LINE L1 -5581 815 284 221 293 12 24 chr1 185715802 185715884 -96477780 + MER5A DNA MER1_type 81 161 -28 23 0 0 0 chr1 185716173 185716196 -96477468 + AT_rich Low_complexity Low_complexity 1 23 0 283 369 10 0 chr1 185716932 185717035 -96476629 + MIR SINE MIR 38 141 -67 265 308 19 10 chr1 185717834 185717959 -96475705 + GA-rich Low_complexity Low_complexity 1 126 0 2229 110 0 3 chr1 185718837 185719147 -96474517 - AluY SINE Alu -2 309 1 253 314 95 7 chr1 185719372 185719509 -96474155 - Charlie8 DNA MER1_type -2223 194 46 31808 77 10 6 chr1 185719509 185725037 -96468627 + L1PA6 LINE L1 634 6153 -1 243 250 125 0 chr1 185725052 185725108 -96468556 - Charlie8 DNA MER1_type -2354 63 1 255 170 0 0 chr1 185725563 185725610 -96468054 + GA-rich Low_complexity Low_complexity 2 48 0 2074 174 59 2 chr1 185725726 185726134 -96467530 - MSTB1 LTR MaLR -1 431 1 723 249 0 57 chr1 185726149 185726358 -96467306 - MER63A DNA MER1_type -13 197 1 343 318 71 47 chr1 185727526 185727737 -96465927 - MIR SINE MIR -20 242 27 21 0 0 0 chr1 185727967 185727988 -96465676 + AT_rich Low_complexity Low_complexity 1 21 0 719 296 39 11 chr1 185728306 185728590 -96465074 - L1ME LINE L1 -310 5811 5520 180 383 55 23 chr1 185728722 185728850 -96464814 + L2 LINE L2 3140 3271 -1 7040 60 4 2 chr1 185728950 185730210 -96463454 - L1PA8 LINE L1 -14 6158 4893 233 300 50 72 chr1 185731604 185731881 -96461783 - L2 LINE L2 -1191 2123 1853 1955 201 47 60 chr1 185732697 185733209 -96460455 - MLT1D LTR MaLR 0 505 1 382 385 124 23 chr1 185733427 185734283 -96459381 - L2 LINE L2 -338 2976 2035 259 163 0 0 chr1 185734573 185734622 -96459042 + L2 LINE L2 3264 3312 -1 1717 185 10 13 chr1 185735513 185735826 -96457838 + AluJo SINE Alu 1 312 0 828 230 12 0 chr1 185736068 185736233 -96457431 + FRAM SINE Alu 1 163 -13 251 319 124 41 chr1 185736862 185737054 -96456610 - L1ME LINE L1 -365 5799 5578 1569 271 74 0 chr1 185737054 185737511 -96456153 - LTR16C LTR ERVL 0 491 1 251 319 124 41 chr1 185737511 185737584 -96456080 - L1ME LINE L1 -586 5578 5512 259 285 62 28 chr1 185737591 185737913 -96455751 - L1M4 LINE L1 -3751 2631 2295 * 989 233 59 40 chr1 185737903 185738305 -96455359 - L1ME3 LINE L1 -262 5900 5492 1537 186 31 28 chr1 185738907 185739197 -96454467 + AluJo SINE Alu 1 291 -21 239 268 0 24 chr1 185741125 185741207 -96452457 + C-rich Low_complexity Low_complexity 4 83 0 2532 155 9 19 chr1 185742244 185742676 -96450988 - MSTC LTR MaLR 0 428 1 12312 160 57 55 chr1 185743481 185743812 -96449852 + L1MA2 LINE L1 2518 2847 -4718 387 0 0 0 chr1 185743812 185743855 -96449809 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 12312 160 57 55 chr1 185743855 185747742 -96445922 + L1MA2 LINE L1 2847 6752 -813 9932 111 103 40 chr1 185747747 185749456 -96444208 + L1PA7 LINE L1 1 1798 -4653 19747 95 5 14 chr1 185749456 185753058 -96440606 + L1PA7 LINE L1 2838 6450 -19 198 0 0 0 chr1 185753058 185753080 -96440584 + (TA)n Simple_repeat Simple_repeat 1 22 0 228 67 0 0 chr1 185753107 185753137 -96440527 + (TG)n Simple_repeat Simple_repeat 2 31 0 314 198 17 23 chr1 185753184 185753361 -96440303 + (TA)n Simple_repeat Simple_repeat 1 176 0 188 119 0 24 chr1 185753419 185753461 -96440203 + (TA)n Simple_repeat Simple_repeat 2 42 0 2053 153 0 3 chr1 185753472 185753785 -96439879 + AluSx SINE Alu 1 312 0 2166 106 0 0 chr1 185753821 185754130 -96439534 + AluSq SINE Alu 1 309 0 6411 101 29 3 chr1 185754160 185755123 -96438541 + L1MA2 LINE L1 6736 7723 0 944 133 0 0 chr1 185755253 185755404 -96438260 - L1PA15 LINE L1 -6 6159 6009 243 330 78 13 chr1 185755577 185755807 -96437857 + L1ME LINE L1 5592 5836 -285 1382 169 50 121 chr1 185755833 185756254 -96437410 + Tigger2a DNA MER2_type 1 391 -43 240 86 0 0 chr1 185756382 185756417 -96437247 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 43 0 0 chr1 185756416 185756439 -96437225 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 344 360 45 30 chr1 185756915 185757115 -96436549 + MIR SINE MIR 4 206 -56 467 301 52 10 chr1 185757180 185757373 -96436291 - L2 LINE L2 -1 3312 3112 394 380 47 22 chr1 185757747 185758023 -96435641 + L1ME3A LINE L1 551 833 -5286 2025 108 4 0 chr1 185758059 185758328 -96435336 + AluSq SINE Alu 26 295 -18 1644 200 157 50 chr1 185758632 185759091 -96434573 + MLT2B1 LTR ERVL 1 508 -12 1242 245 138 24 chr1 185759113 185759533 -96434131 + ERVL-B1 LTR ERVL 2 469 -5295 896 268 9 9 chr1 185759534 185759747 -96433917 + ERVL-B1 LTR ERVL 735 947 -4817 21106 185 37 13 chr1 185759853 185763754 -96429910 + ERVL-B1 LTR ERVL 1213 5207 -557 2425 287 94 34 chr1 185763780 185766045 -96427619 + L1ME3A LINE L1 2630 4757 -1396 2255 107 0 0 chr1 185766045 185766344 -96427320 + AluSq SINE Alu 1 299 -14 2425 287 94 34 chr1 185766344 185766703 -96426961 + L1ME3A LINE L1 4757 5093 -1060 802 138 8 8 chr1 185766703 185766833 -96426831 + FLAM_C SINE Alu 1 130 -3 2425 287 94 34 chr1 185766833 185767324 -96426340 + L1ME3A LINE L1 5093 5951 -202 427 255 36 71 chr1 185767373 185767569 -96426095 + L1ME3A LINE L1 5945 6133 -20 1690 297 73 4 chr1 185767697 185768298 -96425366 - L2 LINE L2 -243 3070 2429 27176 40 0 1 chr1 185768313 185774477 -96419187 + L1PA3 LINE L1 1 6152 -3 821 218 55 129 chr1 185774612 185774975 -96418689 + MLT1A2 LTR MaLR 1 336 -38 5843 160 22 19 chr1 185774975 185776987 -96416677 + L1PB2 LINE L1 4125 6148 -3 22 0 0 0 chr1 185777206 185777228 -96416436 + AT_rich Low_complexity Low_complexity 1 22 0 749 321 4 24 chr1 185777538 185777784 -96415880 + MIR SINE MIR 12 252 -10 2229 107 0 0 chr1 185777872 185778180 -96415484 - AluSx SINE Alu 0 312 1 289 325 64 14 chr1 185779271 185779562 -96414102 + L2 LINE L2 2703 3054 -218 247 157 41 50 chr1 185779806 185779927 -96413737 + (TA)n Simple_repeat Simple_repeat 2 121 0 267 314 83 51 chr1 185782360 185782516 -96411148 - MER5B DNA MER1_type -14 164 4 342 316 158 32 chr1 185782537 185782695 -96410969 - MER5A DNA MER1_type -8 181 4 330 241 0 83 chr1 185783172 185783280 -96410384 - MLT1H LTR MaLR 0 549 451 5118 136 11 27 chr1 185783337 185784234 -96409430 + L1MA6 LINE L1 5418 6300 0 285 29 0 0 chr1 185784469 185784503 -96409161 + (TC)n Simple_repeat Simple_repeat 1 34 0 503 269 177 0 chr1 185786281 185786456 -96407208 + MIR SINE MIR 57 262 0 240 246 66 78 chr1 185786503 185786670 -96406994 - MLT1J LTR MaLR -22 489 325 419 260 10 19 chr1 185786677 185786781 -96406883 + MER5A DNA MER1_type 4 106 -83 424 193 83 69 chr1 185786956 185787101 -96406563 - MLT1J LTR MaLR -362 149 3 305 220 33 22 chr1 185787578 185787669 -96405995 - MLT1J2 LTR MaLR -14 436 345 2273 94 7 0 chr1 185788373 185788670 -96404994 - AluY SINE Alu -12 299 1 185 105 0 26 chr1 185789302 185789340 -96404324 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 245 128 21 0 chr1 185789403 185789450 -96404214 + (TA)n Simple_repeat Simple_repeat 2 49 0 28 0 0 0 chr1 185790295 185790323 -96403341 + AT_rich Low_complexity Low_complexity 1 28 0 204 163 0 0 chr1 185790413 185790456 -96403208 + (CA)n Simple_repeat Simple_repeat 1 43 0 214 315 204 0 chr1 185791154 185791262 -96402402 + L2 LINE L2 3142 3271 -1 263 226 35 0 chr1 185791578 185791646 -96402018 + MIR SINE MIR 83 141 -67 261 0 0 0 chr1 185791808 185791837 -96401827 + (CA)n Simple_repeat Simple_repeat 2 30 0 275 231 13 13 chr1 185792250 185792328 -96401336 - MIR SINE MIR -49 213 136 475 249 89 61 chr1 185792622 185792820 -96400844 + MLT1J2 LTR MaLR 246 446 0 340 325 114 38 chr1 185792860 185793358 -96400306 - L1ME4a LINE L1 -201 5920 5385 1843 141 126 53 chr1 185794297 185794693 -96398971 + MSTA LTR MaLR 1 425 -3 1858 140 43 18 chr1 185795664 185795992 -96397672 + L1PB4 LINE L1 5806 6141 -15 27 0 0 0 chr1 185795996 185796023 -96397641 + AT_rich Low_complexity Low_complexity 1 27 0 420 303 148 0 chr1 185796094 185796256 -96397408 + MIR SINE MIR 48 233 -29 1528 167 17 114 chr1 185796269 185796682 -96396982 + MLT1A2 LTR MaLR 2 374 0 232 267 17 0 chr1 185798168 185798228 -96395436 + GA-rich Low_complexity Low_complexity 1 61 0 495 261 8 107 chr1 185799050 185799311 -96394353 - L2 LINE L2 0 3313 3079 259 350 29 29 chr1 185799345 185799485 -96394179 - L2 LINE L2 -1475 1839 1700 39 22 0 0 chr1 185799497 185799543 -96394121 + AT_rich Low_complexity Low_complexity 1 46 0 313 333 11 0 chr1 185799543 185799633 -96394031 + L2 LINE L2 1163 1253 -2061 232 170 0 0 chr1 185799682 185799729 -96393935 + (TA)n Simple_repeat Simple_repeat 2 48 0 2185 291 8 68 chr1 185799807 185800658 -96393006 - L2 LINE L2 -1904 1410 611 685 244 139 51 chr1 185801077 185801391 -96392273 - MLT1J2 LTR MaLR 0 450 66 4004 157 92 3 chr1 185801681 185802438 -96391226 + LTR1B LTR ERV1 1 825 -1 2607 96 17 3 chr1 185803391 185803744 -96389920 - THE1B LTR MaLR -6 358 1 417 255 109 27 chr1 185803784 185804938 -96388726 + L1MC4 LINE L1 6489 7901 -141 1846 231 121 76 chr1 185804955 185805655 -96388009 + LTR41 LTR ERVL 8 739 -34 248 303 40 0 chr1 185805752 185805828 -96387836 + L1MC4 LINE L1 7933 8011 -31 367 362 65 0 chr1 185806388 185806526 -96387138 + L2 LINE L2 3121 3267 -5 1870 159 135 21 chr1 185806728 185807112 -96386552 + MSTA LTR MaLR 1 428 0 8527 145 57 36 chr1 185807114 185808659 -96385005 + MSTA-int LTR MaLR 3 1580 0 1691 169 156 8 chr1 185808659 185809032 -96384632 + MSTA LTR MaLR 1 428 0 273 369 27 9 chr1 185809580 185809691 -96383973 + MIR SINE MIR 25 137 -125 280 321 58 22 chr1 185810851 185810988 -96382676 + L2 LINE L2 3172 3313 0 427 303 202 28 chr1 185813954 185814172 -96379492 + MIR SINE MIR 2 257 -5 422 312 69 17 chr1 185814991 185815164 -96378500 + MIR3 SINE MIR 15 196 -12 2328 157 33 19 chr1 185816292 185816719 -96376945 - Tigger2a DNA MER2_type 0 434 2 26 0 0 0 chr1 185817889 185817915 -96375749 + AT_rich Low_complexity Low_complexity 1 26 0 4386 212 15 12 chr1 185818346 185820086 -96373578 + L1MB4 LINE L1 4442 6180 0 328 301 89 39 chr1 185820815 185821018 -96372646 - L1ME4a LINE L1 -4 6117 5905 393 272 89 56 chr1 185821453 185821723 -96371941 - L1ME4a LINE L1 -587 5534 5256 344 298 133 27 chr1 185821907 185822132 -96371532 - L1ME4a LINE L1 -1112 5034 4786 740 186 21 6 chr1 185823955 185824293 -96369371 + GA-rich Low_complexity Low_complexity 1 342 0 4774 229 8 6 chr1 185824293 185825152 -96368512 - ERVL LTR ERVL -4628 1136 273 3501 222 22 7 chr1 185825152 185825873 -96367791 + MER44D DNA MER2_type 1 604 -1 4774 229 8 6 chr1 185825873 185825976 -96367688 - ERVL LTR ERVL -5491 273 172 261 229 0 0 chr1 185826019 185826080 -96367584 - ERVL LTR ERVL -5681 83 23 658 68 0 0 chr1 185826080 185826168 -96367496 + L1MA5A LINE L1 6144 6231 -66 375 189 0 56 chr1 185826189 185826279 -96367385 - MLT2D LTR ERVL -329 85 1 5396 178 34 24 chr1 185826349 185826737 -96366927 + L1MA9 LINE L1 4354 4737 -1575 876 96 0 15 chr1 185826737 185826868 -96366796 + L1PB1 LINE L1 6019 6151 0 5396 178 34 24 chr1 185826868 185828427 -96365237 + L1MA9 LINE L1 4737 6311 -1 747 271 47 0 chr1 185828452 185828666 -96364998 - MER112 DNA MER1_type -5 255 32 994 96 17 17 chr1 185828671 185828722 -96364942 + (GAAA)n Simple_repeat Simple_repeat 1 228 0 994 96 17 17 chr1 185828722 185828899 -96364765 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 256 278 97 56 chr1 185829014 185829230 -96364434 + L1MEc LINE L1 1770 1994 -4402 337 144 0 162 chr1 185829233 185829344 -96364320 + L1MEc LINE L1 2183 2275 -4121 773 243 12 0 chr1 185829345 185829518 -96364146 - MER58A DNA MER1_type -1 223 49 6463 204 50 36 chr1 185829629 185832867 -96360797 + L1PA16 LINE L1 2889 6153 -13 666 289 31 39 chr1 185832871 185833286 -96360378 + L1ME LINE L1 2041 2452 -3932 * 2441 201 105 23 chr1 185833261 185833824 -96359840 + L1MCa LINE L1 7 615 -5811 1323 227 72 21 chr1 185833833 185834208 -96359456 + MSTD LTR MaLR 1 394 -2 6748 216 138 67 chr1 185834256 185834510 -96359154 + L1MCa LINE L1 578 813 -5613 186 43 0 0 chr1 185834510 185834533 -96359131 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6748 216 138 67 chr1 185834533 185837243 -96356421 + L1MCa LINE L1 813 3957 -2469 2371 85 0 0 chr1 185837243 185837536 -96356128 - AluY SINE Alu -18 293 1 6748 216 138 67 chr1 185837536 185838905 -96354759 + L1MCa LINE L1 3957 5228 -1198 724 171 23 23 chr1 185838905 185839080 -96354584 + L1MB7 LINE L1 6001 6175 -9 2058 190 12 10 chr1 185839149 185839555 -96354109 - L1MB8 LINE L1 -170 6008 5602 12022 33 5 0 chr1 185839676 185841890 -96351774 - L1PA3 LINE L1 0 6155 3925 13553 31 1 0 chr1 185841890 185843539 -96350125 + L1P LINE L1 1700 3349 -2797 990 264 61 42 chr1 185843672 185845115 -96348549 + L1ME LINE L1 2801 4342 -2084 380 256 8 0 chr1 185845152 185845273 -96348391 + L1ME LINE L1 4525 4646 -1780 5658 118 29 1 chr1 185845278 185846163 -96347501 - L1PA13 LINE L1 -6 6157 5240 712 222 19 42 chr1 185846162 185846378 -96347286 + L1ME LINE L1 5606 5816 -628 * 270 271 21 0 chr1 185846386 185846482 -96347182 + (TA)n Simple_repeat Simple_repeat 1 98 0 882 70 0 0 chr1 185849756 185849870 -96343794 + L1PA8 LINE L1 6045 6158 -14 291 282 10 19 chr1 185850468 185850571 -96343093 + CT-rich Low_complexity Low_complexity 1 102 0 1064 256 124 23 chr1 185850659 185851053 -96342611 - MLT1J2 LTR MaLR -15 435 2 346 281 0 0 chr1 185852114 185852203 -96341461 + MIR SINE MIR 169 257 -5 251 243 0 29 chr1 185852220 185852290 -96341374 + (TAG)n Simple_repeat Simple_repeat 3 70 0 307 309 65 7 chr1 185855590 185855729 -96337935 + L2 LINE L2 3167 3313 0 907 177 48 38 chr1 185855968 185856177 -96337487 + MER58A DNA MER1_type 4 214 -10 252 216 227 82 chr1 185856592 185856786 -96336878 + MER54A LTR ERVL 310 531 -370 * 1603 230 77 42 chr1 185856613 185857108 -96336556 - MER74A LTR ERVL -46 512 1 198 229 0 0 chr1 185858487 185858522 -96335142 - MIR SINE MIR -183 79 45 212 211 0 0 chr1 185860696 185860734 -96332930 - L2 LINE L2 -8 3305 3268 416 361 55 9 chr1 185860796 185861015 -96332649 - MIR SINE MIR -14 248 20 219 320 182 9 chr1 185861017 185861242 -96332422 + L2 LINE L2 3029 3292 -21 2103 134 0 3 chr1 185861607 185861914 -96331750 + AluSx SINE Alu 4 309 -3 365 369 54 0 chr1 185863560 185863709 -96329955 - MIR3 SINE MIR -17 191 35 21 0 0 0 chr1 185863764 185863785 -96329879 + AT_rich Low_complexity Low_complexity 1 21 0 185 271 14 71 chr1 185864889 185864959 -96328705 + MIR SINE MIR 9 74 -188 398 377 11 11 chr1 185867166 185867341 -96326323 + MIR3 SINE MIR 2 176 -32 427 326 138 19 chr1 185868000 185868319 -96325345 + L3b LINE CR1 1132 1488 -95 235 337 99 0 chr1 185868459 185868560 -96325104 - L2 LINE L2 -216 3056 2946 426 349 30 65 chr1 185868619 185868851 -96324813 + MIR SINE MIR 27 250 -12 263 274 242 0 chr1 185869148 185869243 -96324421 + L2 LINE L2 3153 3270 -2 343 284 101 35 chr1 185869712 185869881 -96323783 + MIR SINE MIR 8 187 -75 318 272 44 95 chr1 185870602 185870760 -96322904 + MIR SINE MIR 57 206 -56 2281 89 0 0 chr1 185870853 185871146 -96322518 - AluY SINE Alu -18 293 1 182 62 31 0 chr1 185871147 185871179 -96322485 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1977 125 4 0 chr1 185871179 185871460 -96322204 - AluSq SINE Alu -31 282 1 184 116 0 47 chr1 185871890 185871933 -96321731 + (TA)n Simple_repeat Simple_repeat 1 41 0 476 119 18 64 chr1 185874020 185874129 -96319535 - ORSL DNA AcHobo 0 275 172 1828 116 11 4 chr1 185874213 185874481 -96319183 - AluSq SINE Alu -1 312 43 323 83 0 0 chr1 185874666 185874714 -96318950 + AluSg SINE Alu 40 87 -213 1205 50 0 0 chr1 185874717 185874856 -96318808 + AluSq/x SINE Alu 1 139 -173 316 353 65 11 chr1 185874887 185875071 -96318593 + MIR3 SINE MIR 15 208 0 366 360 22 34 chr1 185875143 185875290 -96318374 + MIR3 SINE MIR 11 157 -51 894 179 62 6 chr1 185875290 185875469 -96318195 + MER5A DNA MER1_type 1 189 0 366 360 22 34 chr1 185875469 185875499 -96318165 + MIR3 SINE MIR 157 186 -22 226 257 71 14 chr1 185876315 185876385 -96317279 + L2 LINE L2 3229 3302 -11 270 260 6 127 chr1 185876807 185876980 -96316684 + L2 LINE L2 3161 3312 -1 231 188 0 0 chr1 185876987 185877035 -96316629 + (TA)n Simple_repeat Simple_repeat 2 49 0 267 164 0 0 chr1 185877060 185877121 -96316543 + (TA)n Simple_repeat Simple_repeat 1 61 0 320 288 256 26 chr1 185877160 185877351 -96316313 + MIR SINE MIR 28 262 0 2316 62 0 14 chr1 185877518 185877834 -96315830 + AluY SINE Alu 1 312 0 189 336 64 71 chr1 185878897 185879037 -96314627 - L2 LINE L2 0 3272 3134 190 338 176 5 chr1 185879111 185879333 -96314331 + L2 LINE L2 2406 2665 -649 5938 107 14 0 chr1 185879345 185880809 -96312855 + L1PA15 LINE L1 4681 6165 0 716 255 140 0 chr1 185880821 185881021 -96312643 + MIR SINE MIR 35 262 0 2267 118 3 0 chr1 185881021 185881327 -96312337 + AluSx SINE Alu 1 307 -5 300 312 139 37 chr1 185881343 185881687 -96311977 + L2 LINE L2 2716 3101 -212 1224 218 35 3 chr1 185881747 185882036 -96311628 - MER58B DNA MER1_type 0 341 44 366 328 32 0 chr1 185882044 185882169 -96311495 + L2 LINE L2 3185 3313 0 1922 133 52 12 chr1 185882409 185882754 -96310910 + THE1B LTR MaLR 6 364 0 823 229 16 11 chr1 185882790 185882978 -96310686 + MER5A DNA MER1_type 1 189 0 493 273 106 31 chr1 185882991 185883152 -96310512 - MER5B DNA MER1_type -5 173 1 2195 112 3 7 chr1 185883976 185884271 -96309393 + AluSg SINE Alu 1 294 -16 201 262 208 13 chr1 185884369 185884518 -96309146 - MIR SINE MIR -12 250 73 299 293 52 75 chr1 185884713 185884887 -96308777 + MIR SINE MIR 81 250 -12 2362 119 0 0 chr1 185885187 185885497 -96308167 + AluSx SINE Alu 3 312 0 185 156 0 0 chr1 185887730 185887762 -96305902 + MIR SINE MIR 70 101 -107 235 317 167 25 chr1 185887897 185888017 -96305647 + MIR SINE MIR 30 166 -96 193 300 0 0 chr1 185888942 185888992 -96304672 + L2 LINE L2 3264 3313 0 338 42 21 0 chr1 185890148 185890196 -96303468 + (CA)n Simple_repeat Simple_repeat 2 50 0 480 62 0 0 chr1 185890740 185890804 -96302860 + (TA)n Simple_repeat Simple_repeat 2 65 0 193 296 62 37 chr1 185890851 185890932 -96302732 + MIR SINE MIR 2 84 -178 267 215 0 0 chr1 185891574 185891639 -96302025 + (CA)n Simple_repeat Simple_repeat 2 66 0 248 53 26 0 chr1 185892744 185892782 -96300882 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2215 125 3 3 chr1 185893235 185893548 -96300116 + AluSq SINE Alu 1 313 0 1176 251 20 25 chr1 185893723 185894077 -96299587 + L1M2 LINE L1 2331 2682 -4167 2186 267 63 19 chr1 185894087 185895233 -96298431 + L1PA15 LINE L1 1 1654 -5133 970 119 0 0 chr1 185896948 185897082 -96296582 + AluSc SINE Alu 161 294 -15 604 220 0 8 chr1 185897355 185897473 -96296191 + FLAM_A SINE Alu 5 121 -12 1619 156 6 81 chr1 185898165 185898485 -96295179 + AluSx SINE Alu 1 296 -16 245 313 20 33 chr1 185899281 185899433 -96294231 - MIR SINE MIR -8 254 13 13947 208 19 40 chr1 185899534 185903692 -96289972 + L1PA15 LINE L1 1659 5809 -1007 428 202 9 18 chr1 185903692 185903801 -96289863 + U5 snRNA snRNA 7 114 -2 13947 208 19 40 chr1 185903801 185904157 -96289507 + L1PA15 LINE L1 5809 6171 -645 345 205 0 12 chr1 185904158 185904241 -96289423 + L1PA15 LINE L1 6722 6803 -13 10974 188 39 49 chr1 185904402 185908443 -96285221 + L1MA9 LINE L1 2025 5979 -569 303 93 0 0 chr1 185908443 185908486 -96285178 + (CA)n Simple_repeat Simple_repeat 2 44 0 10974 188 39 49 chr1 185908486 185909008 -96284656 + L1MA9 LINE L1 5979 6505 -43 390 134 0 0 chr1 185909713 185909780 -96283884 + (GGA)n Simple_repeat Simple_repeat 3 69 0 246 93 70 0 chr1 185910645 185910714 -96282950 + L1MA9 LINE L1 6497 6568 0 297 277 34 50 chr1 185911315 185911434 -96282230 - MLT2E LTR ERVL -479 149 33 2913 13 0 0 chr1 185911591 185911909 -96281755 - AluYb8 SINE Alu 0 318 1 185 333 247 5 chr1 185912057 185912243 -96281421 + L2 LINE L2 2543 2773 -541 209 273 18 0 chr1 185912823 185912878 -96280786 + L2 LINE L2 3258 3313 0 186 43 0 0 chr1 185913024 185913047 -96280617 + (TG)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr1 185917510 185917547 -96276117 + (TG)n Simple_repeat Simple_repeat 1 37 0 2424 68 0 23 chr1 185917749 185918056 -96275608 + AluY SINE Alu 1 300 -11 614 254 28 28 chr1 185918428 185918641 -96275023 + L1MCc LINE L1 1129 1341 -5082 661 237 50 56 chr1 185918643 185918953 -96274711 + L1MCc LINE L1 1281 1579 -4943 2125 121 17 0 chr1 185918953 185919242 -96274422 - AluSx SINE Alu -18 294 1 661 237 50 56 chr1 185919242 185919299 -96274365 + L1MCc LINE L1 1579 1635 -4887 22 0 0 0 chr1 185919823 185919845 -96273819 + AT_rich Low_complexity Low_complexity 1 22 0 234 398 39 10 chr1 185920222 185920325 -96273339 - L2 LINE L2 -25 3247 3142 2493 70 0 10 chr1 185920572 185920886 -96272778 - AluY SINE Alu 0 311 1 3854 76 9 28 chr1 185920886 185921453 -96272211 - L1PA13 LINE L1 -3 6160 5605 501 62 0 0 chr1 185921453 185921518 -96272146 + L1PA13 LINE L1 5539 5603 -565 742 180 124 9 chr1 185921523 185921740 -96271924 - MER33 DNA MER1_type -57 267 26 217 346 48 29 chr1 185921996 185922100 -96271564 + MIR SINE MIR 48 153 -109 269 287 80 69 chr1 185923026 185923105 -96270559 - LTR16C LTR ERVL -3 488 411 204 274 0 0 chr1 185923105 185923156 -96270508 + GA-rich Low_complexity Low_complexity 1 51 0 269 287 80 69 chr1 185923156 185923214 -96270450 - LTR16C LTR ERVL -80 411 299 657 333 32 60 chr1 185923705 185924257 -96269407 - ERVL LTR ERVL -379 5314 4739 1380 197 123 37 chr1 185924279 185924685 -96268979 - MLT1C LTR MaLR 0 467 18 332 357 94 0 chr1 185925099 185925270 -96268394 + MIR SINE MIR 48 234 -28 759 258 24 56 chr1 185925354 185925641 -96268023 + MLT1J LTR MaLR 234 511 0 183 80 0 0 chr1 185926377 185926402 -96267262 + (T)n Simple_repeat Simple_repeat 1 25 0 259 264 14 14 chr1 185926544 185926616 -96267048 - MLT1K LTR MaLR -2 586 515 253 250 0 28 chr1 185926554 185926626 -96267038 - LTR67 LTR ERVL -10 547 478 * 629 315 34 10 chr1 185926967 185927274 -96266390 + L2 LINE L2 2792 3104 -209 383 280 80 20 chr1 185927559 185927709 -96265955 + MLT1L LTR MaLR 354 512 -103 305 336 10 0 chr1 185927802 185927906 -96265758 + L2 LINE L2 3168 3272 0 676 249 45 25 chr1 185927956 185928201 -96265463 + L1ME2 LINE L1 4859 5108 -1038 1053 168 17 0 chr1 185928208 185928381 -96265283 + Tigger4(Zombi) DNA MER2_type 3 178 -2553 1519 158 26 7 chr1 185928504 185928777 -96264887 + Tigger4(Zombi) DNA MER2_type 2454 2731 0 2911 241 54 11 chr1 185928781 185929768 -96263896 + L1ME2 LINE L1 5119 6147 -17 319 273 68 8 chr1 185930174 185930306 -96263358 - MER103 DNA DNA -7 159 20 279 242 16 0 chr1 185930566 185930628 -96263036 + L2 LINE L2 2605 2667 -647 203 291 0 0 chr1 185930654 185930709 -96262955 + MIR SINE MIR 96 150 -112 186 43 0 0 chr1 185930991 185931014 -96262650 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 1113 324 99 35 chr1 185931037 185931664 -96262000 - L2 LINE L2 -764 2550 1884 2102 288 282 35 chr1 185931672 185933044 -96260620 - L2 LINE L2 -498 2816 1106 439 254 116 0 chr1 185933170 185933308 -96260356 - MIR SINE MIR -44 218 65 267 167 37 37 chr1 185933814 185933868 -96259796 - MIR3 SINE MIR -21 187 134 205 322 0 17 chr1 185934019 185934078 -96259586 + L2 LINE L2 3207 3264 -8 321 261 51 65 chr1 185934772 185934910 -96258754 - MIR SINE MIR -102 160 25 346 322 81 38 chr1 185935448 185935659 -96258005 + L2 LINE L2 3052 3271 -1 402 274 13 1 chr1 185935802 185935906 -96257758 + MIR SINE MIR 1 108 -100 21 0 0 0 chr1 185935910 185935931 -96257733 + AT_rich Low_complexity Low_complexity 1 21 0 303 340 136 12 chr1 185936323 185936485 -96257179 + MIR SINE MIR 6 187 -75 379 302 116 23 chr1 185936631 185936846 -96256818 + MIR SINE MIR 14 248 -14 1887 172 0 6 chr1 185937006 185937320 -96256344 - AluJo SINE Alu 0 312 1 6582 68 16 2 chr1 185938301 185939168 -96254496 - L1PA7 LINE L1 -4 6150 5272 619 377 94 19 chr1 185939260 185939381 -96254283 + L2 LINE L2 91 201 -3113 2133 113 7 17 chr1 185939381 185939682 -96253982 - AluSx SINE Alu -14 298 1 619 377 94 19 chr1 185939682 185939959 -96253705 + L2 LINE L2 201 456 -2858 634 242 16 0 chr1 185939959 185940087 -96253577 + FLAM_A SINE Alu 1 130 -3 619 377 94 19 chr1 185940087 185940334 -96253330 + L2 LINE L2 456 786 -2528 784 252 8 140 chr1 185940357 185940722 -96252942 - MLT1I LTR MaLR -23 386 70 545 299 6 0 chr1 185941100 185941257 -96252407 - MIR SINE MIR 0 262 105 184 254 28 42 chr1 185941313 185941384 -96252280 + L2 LINE L2 1012 1081 -2233 1641 341 103 46 chr1 185941603 185941644 -96252020 + L2 LINE L2 1074 1111 -2202 2270 96 3 0 chr1 185941644 185941937 -96251727 + AluSp SINE Alu 1 294 -19 1641 341 103 46 chr1 185941937 185944023 -96249641 + L2 LINE L2 1111 3313 0 811 342 55 37 chr1 185944199 185945124 -96248540 + L1ME2 LINE L1 228 1169 -5227 5722 160 20 4 chr1 185945145 185947011 -96246653 + L1PB2 LINE L1 4246 6139 -12 219 103 0 0 chr1 185947019 185947058 -96246606 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 507 254 43 106 chr1 185947100 185947376 -96246288 + L1ME2 LINE L1 1234 1453 -4943 1936 154 13 3 chr1 185947376 185947681 -96245983 + AluSx SINE Alu 1 308 -4 507 254 43 106 chr1 185947681 185948007 -96245657 + L1ME2 LINE L1 1453 1798 -4598 413 280 58 17 chr1 185948166 185948480 -96245184 + L1ME2 LINE L1 2086 2382 -3833 5944 249 36 29 chr1 185948486 185950718 -96242946 + L1MB7 LINE L1 2884 5048 -1098 329 129 0 97 chr1 185950729 185950791 -96242873 + Alu SINE Alu 238 293 -9 378 251 55 12 chr1 185950791 185950954 -96242710 + L1ME2 LINE L1 3039 3208 -3007 577 189 44 29 chr1 185950958 185951118 -96242546 + MLT1A1 LTR MaLR 10 199 -166 2803 136 9 0 chr1 185951119 185951567 -96242097 + L1PA16 LINE L1 5706 6157 -9 3158 231 35 17 chr1 185951569 185952394 -96241270 + L1ME2 LINE L1 5383 6222 -11 374 284 163 16 chr1 185952690 185952880 -96240784 + MIR SINE MIR 45 262 0 2139 102 20 7 chr1 185953326 185953621 -96240043 + AluSx SINE Alu 1 299 -13 3978 159 61 53 chr1 185953638 185953867 -96239797 + L1MB7 LINE L1 5103 5329 -855 2391 112 0 0 chr1 185953867 185954179 -96239485 + AluSx SINE Alu 1 312 0 3978 159 61 53 chr1 185954179 185955019 -96238645 + L1MB7 LINE L1 5329 6177 -7 353 265 92 24 chr1 185955477 185955611 -96238053 + MIR SINE MIR 2 140 -68 205 271 0 0 chr1 185955758 185955806 -96237858 - L2 LINE L2 -5 3308 3261 294 250 36 12 chr1 185955902 185955986 -96237678 + L2 LINE L2 3228 3313 0 1834 134 74 0 chr1 185956042 185956325 -96237339 + AluSq SINE Alu 1 304 -9 230 272 136 33 chr1 185956531 185956658 -96237006 + MIR SINE MIR 19 163 -45 21 36 0 0 chr1 185956902 185956930 -96236734 + AT_rich Low_complexity Low_complexity 1 28 0 423 270 108 13 chr1 185957386 185957551 -96236113 - MIR SINE MIR -62 146 4 1934 76 3 99 chr1 185957637 185957940 -96235724 - AluSx SINE Alu -38 274 1 184 277 15 15 chr1 185958046 185958111 -96235553 - MIR SINE MIR -109 153 89 217 210 81 48 chr1 185958358 185958420 -96235244 + L3b LINE CR1 1284 1347 -236 213 39 0 0 chr1 185958420 185958446 -96235218 + (GAAA)n Simple_repeat Simple_repeat 4 29 0 193 385 22 0 chr1 185958668 185958759 -96234905 + MIR SINE MIR 50 142 -66 2275 99 3 26 chr1 185959371 185959684 -96233980 + AluSx SINE Alu 1 306 -6 8116 215 34 18 chr1 185960162 185961030 -96232634 - L1MB3 LINE L1 0 6183 5331 194 0 39 0 chr1 185961030 185961056 -96232608 + (TTG)n Simple_repeat Simple_repeat 1 27 0 8116 215 34 18 chr1 185961056 185961632 -96232032 - L1MB3 LINE L1 -852 5331 4766 2314 84 0 10 chr1 185961632 185961930 -96231734 + AluY SINE Alu 1 295 -16 8116 215 34 18 chr1 185961930 185963056 -96230608 - L1MB3 LINE L1 -1417 4766 3564 2012 113 3 64 chr1 185963056 185963385 -96230279 + AluSx SINE Alu 1 309 -3 8116 215 34 18 chr1 185963385 185964000 -96229664 - L1MB3 LINE L1 -2619 3564 2961 4557 232 34 40 chr1 185963995 185964360 -96229304 + MLT1A1-int LTR MaLR 61 426 -1309 * 2310 108 0 13 chr1 185964360 185964676 -96228988 + AluSx SINE Alu 1 312 0 4557 232 34 40 chr1 185964676 185966108 -96227556 + MLT1A1-int LTR MaLR 426 1724 -11 1605 194 35 38 chr1 185966118 185966484 -96227180 + MLT1A1 LTR MaLR 1 365 0 258 255 0 0 chr1 185967624 185967675 -96225989 + L2 LINE L2 3254 3304 -9 325 248 132 16 chr1 185967973 185968094 -96225570 - L2 LINE L2 -1 3312 3178 1177 226 55 66 chr1 185968302 185968740 -96224924 + L1ME3A LINE L1 5689 6121 -49 225 154 0 0 chr1 185968747 185968786 -96224878 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 329 292 0 34 chr1 185969382 185969471 -96224193 - L2 LINE L2 -1 3271 3186 277 377 78 36 chr1 185969980 185970365 -96223299 + L2 LINE L2 2324 2724 -590 1173 263 88 5 chr1 185970438 185970814 -96222850 + L1MC/D LINE L1 5404 5810 -1998 204 163 0 0 chr1 185970819 185970862 -96222802 + A-rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr1 185971057 185971101 -96222563 + AT_rich Low_complexity Low_complexity 1 44 0 1455 159 121 18 chr1 185971191 185971531 -96222133 - THE1C LTR MaLR 0 375 1 437 176 49 10 chr1 185972054 185972221 -96221443 + MER3 DNA MER1_type 1 209 0 660 351 25 0 chr1 185972225 185972427 -96221237 - MIR SINE MIR -38 224 18 25 51 0 0 chr1 185972502 185972541 -96221123 + AT_rich Low_complexity Low_complexity 1 39 0 225 0 0 0 chr1 185972592 185972617 -96221047 + (A)n Simple_repeat Simple_repeat 1 25 0 207 0 0 0 chr1 185972838 185972861 -96220803 + (A)n Simple_repeat Simple_repeat 1 23 0 963 189 106 42 chr1 185972869 185973174 -96220490 + MER57A LTR ERV1 104 402 -1 2810 234 41 51 chr1 185973176 185974337 -96219327 - L1ME2 LINE L1 0 6164 5023 1950 299 38 5 chr1 185974416 185975022 -96218642 + MLT2E LTR ERVL 1 626 -2 1972 165 83 15 chr1 185975029 185975428 -96218236 + MSTB LTR MaLR 1 426 0 240 317 179 32 chr1 185976313 185976436 -96217228 + MIR3 SINE MIR 40 180 -28 200 303 40 40 chr1 185978321 185978397 -96215267 - L2 LINE L2 -3 3310 3235 1657 176 0 17 chr1 185978479 185978795 -96214869 + AluJb SINE Alu 1 311 0 219 296 93 0 chr1 185979585 185979693 -96213971 - MIR SINE MIR 0 262 145 180 125 0 0 chr1 185979938 185979970 -96213694 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 230 343 57 0 chr1 185980531 185980636 -96213028 - MIR SINE MIR -76 186 76 417 294 28 7 chr1 185980791 185980934 -96212730 - L2 LINE L2 0 3313 3168 387 0 0 0 chr1 185980938 185980981 -96212683 + (TG)n Simple_repeat Simple_repeat 2 44 0 913 324 61 9 chr1 185982212 185982684 -96210980 - L2 LINE L2 -150 3163 2669 268 150 20 0 chr1 185982994 185983055 -96210609 - MLT1G LTR MaLR -11 579 476 2123 114 7 0 chr1 185983769 185984058 -96209606 - AluSg SINE Alu -19 291 1 226 329 131 22 chr1 185984412 185984549 -96209115 + MIR3 SINE MIR 48 199 -9 357 316 19 70 chr1 185985085 185985243 -96208421 - MIR SINE MIR -54 208 59 764 301 88 18 chr1 185985366 185985755 -96207909 + MLT1J2 LTR MaLR 59 448 -2 501 316 63 5 chr1 185985773 185985963 -96207701 - L3 LINE CR1 -107 1470 1270 536 269 50 0 chr1 185986903 185987063 -96206601 - MIR SINE MIR -10 252 85 215 268 0 70 chr1 185987137 185987208 -96206456 - MIR SINE MIR -67 141 76 314 303 34 50 chr1 185987474 185987593 -96206071 + MIR3 SINE MIR 58 174 -34 2141 125 0 0 chr1 185989097 185989384 -96204280 + AluSx SINE Alu 1 287 -25 23 33 0 0 chr1 185989384 185989414 -96204250 + AT_rich Low_complexity Low_complexity 1 30 0 936 108 0 32 chr1 185989492 185989678 -96203986 + (TA)n Simple_repeat Simple_repeat 1 180 0 1601 199 102 40 chr1 185989680 185990103 -96203561 - MLT2B1 LTR ERVL -71 449 1 2666 184 26 33 chr1 185990117 185990617 -96203047 + MLT2B3 LTR ERVL 14 511 -43 246 32 0 0 chr1 185990617 185990648 -96203016 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 2666 184 26 33 chr1 185990648 185990692 -96202972 + MLT2B3 LTR ERVL 511 554 0 623 278 67 57 chr1 185990693 185991203 -96202461 - HAL1 LINE L1 -910 1597 1083 421 180 73 27 chr1 185991252 185991402 -96202262 - HAL1 LINE L1 -1511 996 840 2283 116 3 0 chr1 185991411 185991721 -96201943 + AluSp SINE Alu 1 311 -2 317 156 0 16 chr1 185991725 185991789 -96201875 + L1MC/D LINE L1 5769 5831 -411 519 274 87 78 chr1 185991990 185992540 -96201124 - HAL1 LINE L1 -1886 621 67 270 73 0 0 chr1 185992554 185992595 -96201069 + (TG)n Simple_repeat Simple_repeat 2 42 0 677 116 47 23 chr1 185992774 185992946 -96200718 + G-rich Low_complexity Low_complexity 3 178 0 247 65 0 0 chr1 185992946 185992977 -96200687 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 226 87 43 0 chr1 185994022 185994068 -96199596 + CT-rich Low_complexity Low_complexity 1 48 0 280 279 0 0 chr1 185994143 185994211 -96199453 + L2 LINE L2 3245 3312 -1 264 100 0 0 chr1 185995802 185995842 -96197822 + (TC)n Simple_repeat Simple_repeat 1 40 0 990 234 68 9 chr1 185995891 185996563 -96197101 - L1ME1 LINE L1 -47 6119 5255 626 211 14 103 chr1 185996880 185997093 -96196571 - MER58A DNA MER1_type -3 221 28 348 24 0 0 chr1 185997118 185997159 -96196505 + (CA)n Simple_repeat Simple_repeat 2 42 0 560 304 61 6 chr1 185998021 185998202 -96195462 - MIR SINE MIR -16 246 56 2095 139 7 0 chr1 186000163 186000465 -96193199 + AluSq SINE Alu 9 312 -1 2012 169 25 3 chr1 186000465 186000819 -96192845 - MSTB LTR MaLR -64 362 1 8707 170 27 30 chr1 186000819 186002475 -96191189 - MSTB-int LTR MaLR 0 1651 2 1090 169 29 19 chr1 186002476 186002683 -96190981 - MSTB LTR MaLR -2 424 216 993 112 0 8 chr1 186002684 186002818 -96190846 + AluSq/x SINE Alu 1 133 -180 702 274 17 0 chr1 186002948 186003127 -96190537 + MIR SINE MIR 4 185 -77 1163 178 14 14 chr1 186003144 186003352 -96190312 + AluJo SINE Alu 86 293 -19 239 286 0 0 chr1 186003353 186003409 -96190255 + MIR SINE MIR 207 262 0 320 291 34 67 chr1 186004234 186004413 -96189251 - MLT1J LTR MaLR -338 173 1 213 333 24 24 chr1 186004534 186004618 -96189046 - L2 LINE L2 -4 3268 3185 21 0 0 0 chr1 186004673 186004694 -96188970 + AT_rich Low_complexity Low_complexity 1 21 0 2324 101 0 3 chr1 186004709 186005005 -96188659 + AluSx SINE Alu 2 296 -16 4700 262 86 6 chr1 186005056 186006489 -96187175 + L1MB7 LINE L1 69 1615 -5244 414 203 0 13 chr1 186006496 186006575 -96187089 + FLAM_C SINE Alu 30 107 -36 631 191 13 15 chr1 186006581 186006876 -96186788 + GA-rich Low_complexity Low_complexity 1 294 0 2470 245 59 88 chr1 186006901 186007522 -96186142 + L1MB7 LINE L1 1601 2238 -4719 1981 129 16 30 chr1 186007522 186007825 -96185839 + AluSx SINE Alu 1 299 -13 2470 245 59 88 chr1 186007825 186009244 -96184420 + L1MB7 LINE L1 2238 3695 -3262 800 209 0 13 chr1 186009244 186009397 -96184267 + FRAM SINE Alu 2 152 -24 2470 245 59 88 chr1 186009397 186009839 -96183825 + L1MB7 LINE L1 3695 4148 -2809 3488 91 4 0 chr1 186009839 186010335 -96183329 + L1MA2 LINE L1 5807 6304 0 2470 245 59 88 chr1 186010335 186010860 -96182804 + L1MB7 LINE L1 4148 4793 -2164 2246 123 0 3 chr1 186010868 186011176 -96182488 + AluSx SINE Alu 1 307 -5 2771 16 0 0 chr1 186011203 186011507 -96182157 + AluYa5 SINE Alu 1 304 -7 874 173 8 81 chr1 186011508 186011611 -96182053 + L1MB7 LINE L1 5991 6100 -885 1950 138 7 7 chr1 186011611 186011902 -96181762 + AluSx SINE Alu 1 291 -21 874 173 8 81 chr1 186011902 186012082 -96181582 + L1MB7 LINE L1 6100 6261 -724 40111 41 21 11 chr1 186012087 186018180 -96175484 + L1PA2 LINE L1 3 6155 0 2251 207 36 3 chr1 186018180 186018740 -96174924 + L1MB7 LINE L1 6251 6818 -176 288 200 100 10 chr1 186018984 186019084 -96174580 - MERVL LTR ERVL -201 5284 5176 989 331 45 24 chr1 186019520 186019903 -96173761 - MERVL LTR ERVL -1281 4204 3831 189 0 0 0 chr1 186019903 186019924 -96173740 + (TA)n Simple_repeat Simple_repeat 2 22 0 989 331 45 24 chr1 186019924 186020475 -96173189 - MERVL LTR ERVL -1654 3831 3282 313 349 0 0 chr1 186020641 186020727 -96172937 - MERVL LTR ERVL -1961 3035 2950 366 100 0 0 chr1 186020741 186020791 -96172873 + Alu SINE Alu 1 50 -253 911 135 0 0 chr1 186020791 186020924 -96172740 + AluSg/x SINE Alu 149 281 -31 3522 297 20 21 chr1 186020939 186022182 -96171482 - MERVL LTR ERVL -2143 2853 1612 1535 303 86 11 chr1 186022239 186022866 -96170798 - MERVL LTR ERVL -3508 1488 815 921 293 127 15 chr1 186023569 186023972 -96169692 - LTR16B LTR ERVL -16 448 1 658 277 54 102 chr1 186025041 186025482 -96168182 - MLT1K LTR MaLR -91 497 78 715 314 62 0 chr1 186025984 186026226 -96167438 - MIR SINE MIR 0 262 6 224 290 177 16 chr1 186026198 186026322 -96167342 + MIR SINE MIR 62 205 -57 * 369 238 24 35 chr1 186026420 186026561 -96167103 + MIR SINE MIR 42 176 -66 2164 116 0 14 chr1 186028773 186029090 -96164574 + AluSx SINE Alu 1 312 0 1353 128 140 40 chr1 186029241 186029491 -96164173 + THE1B LTR MaLR 90 364 0 246 327 19 19 chr1 186030107 186030214 -96163450 - MIR SINE MIR -66 142 36 238 342 37 25 chr1 186030797 186030958 -96162706 + MIR SINE MIR 90 252 -10 1406 166 33 44 chr1 186031154 186031425 -96162239 + Tigger3b DNA MER2_type 1 268 -963 6193 108 36 17 chr1 186031509 186032474 -96161190 + Tigger3b DNA MER2_type 248 1231 0 1938 168 0 3 chr1 186033008 186033306 -96160358 - AluJo SINE Alu -13 299 3 952 321 73 12 chr1 186033561 186033701 -96159963 + LTR16A LTR ERVL 1 131 -319 1778 104 8 17 chr1 186033701 186033942 -96159722 + AluSx SINE Alu 57 295 -17 952 321 73 12 chr1 186033942 186034225 -96159439 + LTR16A LTR ERVL 131 450 0 592 317 65 4 chr1 186034656 186034902 -96158762 + MIR SINE MIR 2 262 0 1178 194 9 14 chr1 186035212 186035428 -96158236 - MER58A DNA MER1_type 0 224 10 2265 118 3 6 chr1 186036002 186036356 -96157308 - AluSx SINE Alu 0 353 1 335 347 47 20 chr1 186036481 186036631 -96157033 + MIR3 SINE MIR 25 178 -30 204 182 0 0 chr1 186037107 186037151 -96156513 + GA-rich Low_complexity Low_complexity 2 45 0 222 118 0 0 chr1 186037345 186037379 -96156285 + (A)n Simple_repeat Simple_repeat 1 34 0 1882 123 142 6 chr1 186038436 186038754 -96154910 + MER46B DNA MER2_type 1 236 0 2905 197 30 46 chr1 186038754 186038799 -96154865 - MLT2B3 LTR ERVL 0 554 510 471 18 0 0 chr1 186038799 186038855 -96154809 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 2167 126 3 0 chr1 186038855 186039157 -96154507 - AluSx SINE Alu -9 303 1 2905 197 30 46 chr1 186039157 186039671 -96153993 - MLT2B3 LTR ERVL -42 512 1 202 233 17 17 chr1 186039694 186039754 -96153910 + L2 LINE L2 3161 3220 -93 357 327 75 0 chr1 186039808 186039915 -96153749 - L2 LINE L2 0 3272 3158 285 225 75 0 chr1 186039986 186040066 -96153598 - MIR SINE MIR 0 262 177 3641 73 13 9 chr1 186040066 186040517 -96153147 - MLT2A2 LTR ERVL 0 453 1 448 290 22 14 chr1 186040583 186040721 -96152943 - MIR SINE MIR -87 175 37 316 213 33 0 chr1 186040766 186040827 -96152837 - L2 LINE L2 -243 3070 3008 2458 84 0 0 chr1 186040838 186041148 -96152516 + AluY SINE Alu 1 310 -1 336 266 59 104 chr1 186041646 186041868 -96151796 + MIR SINE MIR 18 229 -33 193 311 0 0 chr1 186042178 186042239 -96151425 - MIR SINE MIR -58 204 144 599 313 134 26 chr1 186042255 186042606 -96151058 + MLT1I LTR MaLR 21 409 0 2112 124 13 0 chr1 186042745 186043044 -96150620 + AluSg SINE Alu 8 310 0 203 323 104 0 chr1 186043686 186043782 -96149882 + MIR3 SINE MIR 91 196 -12 198 0 0 0 chr1 186044767 186044789 -96148875 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 221 83 28 0 chr1 186044788 186044824 -96148840 + (TA)n Simple_repeat Simple_repeat 1 37 0 393 313 62 92 chr1 186044847 186045074 -96148590 + L2 LINE L2 2977 3196 -76 237 282 14 0 chr1 186045239 186045310 -96148354 + L2 LINE L2 3242 3313 0 454 281 113 31 chr1 186046212 186046468 -96147196 - L2 LINE L2 -4 3309 3033 2276 92 3 7 chr1 186046469 186046772 -96146892 + AluSp SINE Alu 1 302 -11 2180 94 14 0 chr1 186046835 186047123 -96146541 + AluSx SINE Alu 1 292 -20 2450 81 0 0 chr1 186047123 186047420 -96146244 + AluSg SINE Alu 1 298 -12 383 320 89 36 chr1 186047442 186047667 -96145997 - L2 LINE L2 -571 2743 2507 1869 221 125 62 chr1 186048537 186048785 -96144879 + MLT1E2 LTR MaLR 5 236 -390 2067 123 24 0 chr1 186048785 186049077 -96144587 + AluSx SINE Alu 1 299 -13 1869 221 125 62 chr1 186049077 186049413 -96144251 + MLT1E2 LTR MaLR 236 626 0 572 251 73 55 chr1 186049643 186049862 -96143802 + MIR SINE MIR 8 230 -32 464 340 73 28 chr1 186050350 186050597 -96143067 - MIR SINE MIR 0 262 5 222 348 11 11 chr1 186050782 186050874 -96142790 + MIR SINE MIR 19 110 -98 1995 104 15 0 chr1 186050920 186051190 -96142474 + AluSx SINE Alu 33 306 -6 2411 81 7 0 chr1 186051363 186051660 -96142004 - AluSp SINE Alu -14 299 1 1994 117 7 7 chr1 186051660 186051950 -96141714 - Tigger3b DNA MER2_type -1 1230 941 15828 136 15 107 chr1 186051968 186055306 -96138358 + L1P LINE L1 12 3040 -3106 2112 74 0 0 chr1 186055284 186055554 -96138110 + L1PA7 LINE L1 5885 6154 0 * 3881 131 44 35 chr1 186055561 186056285 -96137379 - Tigger3b DNA MER2_type -276 955 225 988 132 0 2 chr1 186056288 186056523 -96137141 + AluJ SINE Alu 3 293 -19 1391 185 58 8 chr1 186056529 186056788 -96136876 - Tigger3b DNA MER2_type -958 273 2 313 365 79 0 chr1 186057366 186057492 -96136172 + L2 LINE L2 3137 3272 0 1368 171 136 15 chr1 186058367 186058707 -96134957 + MLT1A1 LTR MaLR 1 365 0 1641 159 114 0 chr1 186058859 186059130 -96134534 + AluJb SINE Alu 1 302 0 245 333 77 0 chr1 186059153 186059231 -96134433 + MIR SINE MIR 2 85 -177 426 238 20 147 chr1 186059236 186059378 -96134286 + L2 LINE L2 1539 1612 -1702 1314 34 5 20 chr1 186059378 186059581 -96134083 + (GAAA)n Simple_repeat Simple_repeat 1 200 0 426 238 20 147 chr1 186059581 186059790 -96133874 + L2 LINE L2 1612 1846 -1468 4608 220 85 28 chr1 186059843 186060381 -96133283 - ERVL-B3 LTR ERVL -4540 1224 718 1892 170 0 19 chr1 186060381 186060693 -96132971 - AluJb SINE Alu -6 306 1 4608 220 85 28 chr1 186060693 186061260 -96132404 - ERVL-B3 LTR ERVL -5046 718 56 1977 294 58 33 chr1 186061265 186061319 -96132345 + L2 LINE L2 1835 1886 -1428 3345 154 23 46 chr1 186061319 186061884 -96131780 - MLT2B3 LTR ERVL -2 552 1 1977 294 58 33 chr1 186061884 186062785 -96130879 + L2 LINE L2 1886 2864 -450 21 0 0 0 chr1 186063924 186063945 -96129719 + AT_rich Low_complexity Low_complexity 1 21 0 288 345 17 35 chr1 186064064 186064180 -96129484 - MIR3 SINE MIR -46 162 49 276 154 15 46 chr1 186064238 186064303 -96129361 + L2 LINE L2 3251 3313 0 1798 163 23 7 chr1 186064873 186065180 -96128484 - AluJb SINE Alu 0 312 1 33 43 0 0 chr1 186065258 186065305 -96128359 + AT_rich Low_complexity Low_complexity 1 47 0 1770 137 7 41 chr1 186065306 186065598 -96128066 - AluJb SINE Alu -29 283 2 261 0 0 0 chr1 186065598 186065627 -96128037 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 896 176 0 0 chr1 186065632 186065774 -96127890 - FRAM SINE Alu -30 146 5 1506 195 30 27 chr1 186065783 186066080 -96127584 - AluJo SINE Alu -14 298 1 1227 118 0 0 chr1 186066088 186066257 -96127407 - AluSg/x SINE Alu -15 295 127 1464 204 83 119 chr1 186068980 186069500 -96124164 - MLT1D LTR MaLR 0 505 5 1982 105 0 89 chr1 186069682 186070007 -96123657 - AluSx SINE Alu -16 296 1 1786 185 3 10 chr1 186070034 186070337 -96123327 + AluJo SINE Alu 1 301 -11 1667 183 0 35 chr1 186071930 186072247 -96121417 + AluJo SINE Alu 1 306 -6 2164 107 13 7 chr1 186072598 186072896 -96120768 + AluSx SINE Alu 1 300 -12 2012 136 3 10 chr1 186073023 186073331 -96120333 + AluSx SINE Alu 1 306 -6 330 151 65 0 chr1 186073343 186073482 -96120182 + (TA)n Simple_repeat Simple_repeat 1 148 0 206 283 0 33 chr1 186074333 186074393 -96119271 - L2 LINE L2 -5 3267 3210 180 0 0 0 chr1 186074515 186074535 -96119129 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 209 313 0 16 chr1 186075235 186075299 -96118365 - L2 LINE L2 -569 2745 2683 923 108 8 0 chr1 186075299 186075429 -96118235 + AluSg SINE Alu 1 131 -179 511 118 0 0 chr1 186075585 186075653 -96118011 + AluJ/FLAM SINE Alu 6 73 -239 511 88 0 0 chr1 186075753 186075821 -96117843 + Alu SINE Alu 235 302 -10 1182 160 0 15 chr1 186075986 186076060 -96117604 - AluJb SINE Alu -115 197 123 207 0 0 0 chr1 186076060 186076083 -96117581 + (TA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr1 186076084 186076104 -96117560 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1182 160 0 15 chr1 186076104 186076227 -96117437 - AluJb SINE Alu -188 124 1 2615 147 29 25 chr1 186076432 186076914 -96116750 + MER41B LTR ERV1 114 597 -38 1482 164 293 50 chr1 186076942 186077441 -96116223 + LTR29 LTR ERV1 3 622 0 2196 102 6 22 chr1 186077512 186077826 -96115838 - AluSc SINE Alu 0 309 1 1703 110 4 4 chr1 186077841 186078077 -96115587 - AluSx SINE Alu -76 236 1 396 0 0 0 chr1 186078111 186078155 -96115509 + (CA)n Simple_repeat Simple_repeat 1 44 0 570 189 20 98 chr1 186078157 186078310 -96115354 - MER21B LTR ERV1 -640 223 83 296 245 61 31 chr1 186078321 186078419 -96115245 - MER21B LTR ERV1 -752 111 11 649 136 164 0 chr1 186078633 186078743 -96114921 + FLAM_C SINE Alu 1 128 -5 215 235 20 0 chr1 186078809 186078860 -96114804 - MIR SINE MIR -101 161 110 666 244 0 0 chr1 186079460 186079583 -96114081 - FLAM_C SINE Alu -19 124 2 1915 178 58 164 chr1 186080179 186080976 -96112688 - LTR8A LTR ERV1 -15 712 1 420 234 109 16 chr1 186080981 186081109 -96112555 - MIR3 SINE MIR -37 171 32 461 317 74 45 chr1 186081211 186081352 -96112312 - MIR SINE MIR 0 262 110 2430 148 80 8 chr1 186081352 186081751 -96111913 - MSTA LTR MaLR 0 428 1 461 317 74 45 chr1 186081751 186081852 -96111812 - MIR SINE MIR -152 110 13 1754 187 7 0 chr1 186082946 186083251 -96110413 - AluJo SINE Alu -5 307 1 754 315 105 59 chr1 186083648 186084324 -96109340 + L2 LINE L2 1615 2321 -993 822 269 9 19 chr1 186084330 186084542 -96109122 - MER63A DNA MER1_type 0 210 1 687 323 47 71 chr1 186084797 186085453 -96108211 + L2 LINE L2 2619 3268 -4 2093 134 0 3 chr1 186086206 186086505 -96107159 + AluSx SINE Alu 1 298 -14 485 273 38 72 chr1 186086510 186086719 -96106945 - MIR SINE MIR -56 206 5 232 315 67 34 chr1 186088664 186088753 -96104911 + MER5A DNA MER1_type 1 92 -97 952 239 47 19 chr1 186088850 186089063 -96104601 + MER20 DNA MER1_type 1 219 0 243 186 47 0 chr1 186089591 186089634 -96104030 + MER3 DNA MER1_type 44 88 -121 182 33 67 0 chr1 186089635 186089665 -96103999 + (TTAAA)n Simple_repeat Simple_repeat 1 32 0 281 337 0 0 chr1 186089823 186089906 -96103758 + (CA)n Simple_repeat Simple_repeat 2 84 0 366 172 0 161 chr1 186089906 186089946 -96103718 + Tigger3(Golem) DNA MER2_type 11 29 -573 2287 123 0 0 chr1 186089946 186090255 -96103409 + AluSx SINE Alu 1 309 -3 366 172 0 161 chr1 186090255 186090307 -96103357 + Tigger3(Golem) DNA MER2_type 29 88 -514 2247 106 17 0 chr1 186090421 186090714 -96102950 - AluSx SINE Alu -14 298 1 862 244 95 36 chr1 186090762 186091098 -96102566 + MLT1C LTR MaLR 10 365 -102 2325 72 0 0 chr1 186091148 186091440 -96102224 - AluY SINE Alu -2 309 18 1395 179 13 4 chr1 186091454 186091689 -96101975 - AluJo SINE Alu -74 238 2 790 64 0 0 chr1 186091701 186091795 -96101869 - AluY SINE Alu -12 299 206 550 285 64 93 chr1 186092079 186092455 -96101209 - MLT1J LTR MaLR -144 367 3 1995 94 0 88 chr1 186092911 186093240 -96100424 - AluSx SINE Alu -12 300 1 984 293 76 59 chr1 186093240 186093759 -96099905 + MLT1H LTR MaLR 19 549 0 367 288 145 24 chr1 186094091 186094295 -96099369 - MIR SINE MIR -12 250 14 499 267 76 23 chr1 186094423 186094595 -96099069 + L2 LINE L2 3111 3291 -22 221 241 74 0 chr1 186094940 186094994 -96098670 + MIR SINE MIR 114 171 -91 296 292 18 77 chr1 186095067 186095235 -96098429 + L2 LINE L2 2517 2674 -640 847 274 109 52 chr1 186095255 186095310 -96098354 + L2 LINE L2 2825 2875 -438 2312 109 3 3 chr1 186095310 186095622 -96098042 - AluSp SINE Alu -1 312 1 847 274 109 52 chr1 186095622 186095979 -96097685 + L2 LINE L2 2875 3268 -45 2841 10 0 0 chr1 186095979 186096285 -96097379 + AluYa5 SINE Alu 4 309 -2 847 274 109 52 chr1 186096285 186096331 -96097333 + L2 LINE L2 3268 3310 -3 688 304 97 65 chr1 186096310 186096874 -96096790 + L2 LINE L2 2702 3265 -48 * 2378 122 48 20 chr1 186097246 186097600 -96096064 - THE1B LTR MaLR 0 364 1 12357 83 14 17 chr1 186097600 186098750 -96094914 - THE1B-int LTR MaLR 0 1580 434 2320 102 3 0 chr1 186098750 186099055 -96094609 - AluSp SINE Alu -3 310 5 12357 83 14 17 chr1 186099055 186099488 -96094176 - THE1B-int LTR MaLR -1146 434 1 3211 114 96 4 chr1 186099530 186100031 -96093633 - LTR10A LTR ERV1 -62 547 1 2481 109 51 11 chr1 186100080 186100430 -96093234 - THE1B LTR MaLR 0 364 1 2289 114 3 0 chr1 186100738 186101044 -96092620 + AluSg SINE Alu 1 307 -3 2326 88 3 0 chr1 186101457 186101753 -96091911 - AluSp SINE Alu -16 297 1 2397 93 3 0 chr1 186101869 186102181 -96091483 - AluSp SINE Alu 0 313 1 21 71 0 0 chr1 186102263 186102305 -96091359 + AT_rich Low_complexity Low_complexity 1 42 0 1722 154 3 59 chr1 186102456 186102761 -96090903 - AluJb SINE Alu -24 288 1 267 281 78 66 chr1 186102850 186103017 -96090647 + MIR SINE MIR 90 258 -4 21 0 0 0 chr1 186103020 186103041 -96090623 + AT_rich Low_complexity Low_complexity 1 21 0 952 110 0 0 chr1 186103379 186103506 -96090158 + AluSg SINE Alu 5 131 -179 214 198 236 9 chr1 186103617 186103723 -96089941 - L3b LINE CR1 -190 1393 1264 23 0 0 0 chr1 186104048 186104071 -96089593 + AT_rich Low_complexity Low_complexity 1 23 0 186 103 0 0 chr1 186106195 186106224 -96087440 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr1 186108454 186108492 -96085172 + AT_rich Low_complexity Low_complexity 1 38 0 378 0 0 0 chr1 186109035 186109077 -96084587 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr1 186109965 186109987 -96083677 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 186110840 186110861 -96082803 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr1 186111395 186111424 -96082240 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr1 186112002 186112033 -96081631 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 239 0 0 chr1 186113742 186113788 -96079876 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chr1 186114154 186114176 -96079488 + AT_rich Low_complexity Low_complexity 1 22 0 264 299 37 110 chr1 186115674 186115747 -96077917 + MIR3 SINE MIR 53 109 -99 1087 243 32 4 chr1 186115747 186115998 -96077666 + MIR SINE MIR 5 262 0 264 299 37 110 chr1 186115998 186116088 -96077576 + MIR3 SINE MIR 109 204 -4 1831 123 51 0 chr1 186116143 186116436 -96077228 - AluSx SINE Alu -4 308 1 6728 59 4 2 chr1 186116787 186117629 -96076035 - L1PA7 LINE L1 0 6154 5312 2822 167 23 71 chr1 186117741 186118388 -96075276 - L1MB7 LINE L1 -11 6173 5558 321 75 0 38 chr1 186118397 186118450 -96075214 - L1MA10 LINE L1 -1 6333 6283 387 0 0 0 chr1 186118452 186118495 -96075169 + (TA)n Simple_repeat Simple_repeat 1 43 0 2052 125 35 0 chr1 186118497 186118785 -96074879 - AluSx SINE Alu -14 298 1 182 336 80 22 chr1 186119204 186119341 -96074323 + MIR SINE MIR 77 221 -41 862 91 68 23 chr1 186119660 186119836 -96073828 - Charlie5 DNA MER1_type -24 2588 2405 1396 135 28 82 chr1 186119847 186120063 -96073601 - MER33 DNA MER1_type -2297 288 93 2287 86 27 7 chr1 186120063 186120364 -96073300 - AluSx SINE Alu -4 308 2 1396 135 28 82 chr1 186120364 186120465 -96073199 - MER33 DNA MER1_type -2492 93 1 197 286 39 26 chr1 186120912 186120989 -96072675 + MIR SINE MIR 67 144 -118 2242 94 24 0 chr1 186121280 186121568 -96072096 + AluSx SINE Alu 2 296 -16 394 209 29 21 chr1 186126446 186126549 -96067115 - MIR SINE MIR -61 147 63 2391 81 0 7 chr1 186126862 186127160 -96066504 - AluSx SINE Alu -16 296 1 2217 108 0 7 chr1 186127163 186127458 -96066206 - AluSq SINE Alu -20 293 1 2493 77 0 0 chr1 186127808 186128105 -96065559 - AluSg SINE Alu -13 297 1 2436 86 0 3 chr1 186129000 186129303 -96064361 - AluSq SINE Alu -11 302 1 254 235 73 103 chr1 186130555 186130691 -96062973 + L2 LINE L2 3181 3312 -1 611 210 0 24 chr1 186130797 186130921 -96062743 + FLAM_A SINE Alu 1 121 -12 315 71 0 0 chr1 186130922 186130964 -96062700 + (GA)n Simple_repeat Simple_repeat 1 42 0 22 35 0 0 chr1 186131594 186131623 -96062041 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr1 186132531 186132557 -96061107 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 262 260 39 29 chr1 186133907 186134011 -96059653 + MIR3 SINE MIR 81 185 -23 243 0 0 0 chr1 186135054 186135081 -96058583 + (T)n Simple_repeat Simple_repeat 1 27 0 198 313 45 0 chr1 186136348 186136415 -96057249 - MIR SINE MIR -84 124 55 1794 161 7 17 chr1 186136507 186136806 -96056858 + AluJb SINE Alu 1 296 -16 1109 157 0 0 chr1 186137427 186137593 -96056071 - AluSg/x SINE Alu -13 299 134 2308 100 3 0 chr1 186137593 186137892 -96055772 - AluSx SINE Alu -12 300 1 203 288 0 0 chr1 186138663 186138722 -96054942 + G-rich Low_complexity Low_complexity 2 60 0 2143 129 0 7 chr1 186139535 186139838 -96053826 - AluSx SINE Alu -11 301 1 249 298 73 32 chr1 186140075 186140199 -96053465 + MIR SINE MIR 47 175 -87 187 156 0 0 chr1 186140707 186140739 -96052925 - MIR SINE MIR -112 150 119 192 241 0 37 chr1 186140808 186140862 -96052802 - MIR3 SINE MIR -8 200 149 2116 92 50 0 chr1 186140882 186141165 -96052499 - AluSq SINE Alu -16 297 1 1137 133 149 8 chr1 186141195 186141444 -96052220 - MER33 DNA MER1_type -40 284 1 233 236 0 0 chr1 186141444 186141499 -96052165 - MIR3 SINE MIR -48 160 106 255 256 151 23 chr1 186142818 186143014 -96050650 + MER102a DNA MER1_type 109 327 -3 418 118 40 13 chr1 186143026 186143102 -96050562 + MER20 DNA MER1_type 1 78 -141 239 304 11 11 chr1 186143481 186143573 -96050091 - MIR SINE MIR -77 131 40 41 0 0 0 chr1 186144386 186144427 -96049237 + AT_rich Low_complexity Low_complexity 1 41 0 1059 221 90 47 chr1 186144497 186144828 -96048836 - MSTD LTR MaLR 0 396 2 200 250 36 18 chr1 186144865 186144921 -96048743 + CT-rich Low_complexity Low_complexity 4 60 0 302 267 131 40 chr1 186145407 186145583 -96048081 - MIR SINE MIR -56 206 15 180 0 0 0 chr1 186145656 186145676 -96047988 + (T)n Simple_repeat Simple_repeat 1 20 0 34 0 0 0 chr1 186145826 186145860 -96047804 + AT_rich Low_complexity Low_complexity 1 34 0 922 91 0 0 chr1 186146833 186146954 -96046710 - AluSg/x SINE Alu -6 306 186 1105 196 15 0 chr1 186147242 186147446 -96046218 - AluSq SINE Alu -106 207 1 2451 81 10 7 chr1 186147852 186148160 -96045504 + AluSx SINE Alu 1 309 -3 2128 124 19 3 chr1 186150836 186151143 -96042521 - AluSx SINE Alu 0 312 1 225 113 0 113 chr1 186151334 186151387 -96042277 - L2 LINE L2 0 3313 3267 1649 135 0 0 chr1 186153110 186153340 -96040324 + AluSq SINE Alu 1 230 -83 299 100 0 0 chr1 186153343 186153383 -96040281 + AluSg/x SINE Alu 191 230 -72 679 150 0 0 chr1 186153386 186153486 -96040178 + AluSg/x SINE Alu 188 287 -22 516 207 57 29 chr1 186153527 186153667 -96039997 + L2 LINE L2 3169 3312 -1 425 327 141 18 chr1 186154096 186154592 -96039072 - L2 LINE L2 -584 2730 2174 267 146 0 0 chr1 186154855 186154896 -96038768 + MER117 DNA MER1_type 1 41 -156 339 194 16 0 chr1 186155030 186155092 -96038572 - L2 LINE L2 0 3272 3210 23 0 0 0 chr1 186156005 186156028 -96037636 + AT_rich Low_complexity Low_complexity 1 23 0 381 269 0 19 chr1 186156591 186156695 -96036969 + L2 LINE L2 3171 3272 0 2619 37 0 3 chr1 186158084 186158384 -96035280 - AluY SINE Alu -12 299 1 578 284 71 0 chr1 186159655 186159866 -96033798 + MIR SINE MIR 4 229 -33 235 218 0 18 chr1 186159965 186160020 -96033644 - L1MC/D LINE L1 -1884 5924 5871 345 344 83 18 chr1 186160166 186160384 -96033280 + L2 LINE L2 2864 3095 -177 325 305 28 21 chr1 186161038 186161179 -96032485 - MIR3 SINE MIR -7 201 60 2078 136 0 7 chr1 186161620 186161922 -96031742 - AluSx SINE Alu -12 300 1 794 277 12 16 chr1 186163613 186163855 -96029809 - MIR SINE MIR -1 261 21 364 214 124 41 chr1 186164364 186164509 -96029155 + MER103 DNA DNA 2 158 -8 1630 127 58 69 chr1 186166734 186167025 -96026639 + AluJb SINE Alu 1 288 -24 2160 113 0 0 chr1 186167519 186167824 -96025840 - AluSx SINE Alu 0 306 2 2331 82 0 0 chr1 186167844 186168125 -96025539 - AluSc SINE Alu -24 285 5 220 204 0 20 chr1 186169688 186169737 -96023927 + (CA)n Simple_repeat Simple_repeat 1 48 0 2259 93 35 0 chr1 186169746 186170035 -96023629 - AluSg SINE Alu -11 299 1 222 231 39 26 chr1 186170517 186170595 -96023069 + (TCTCTG)n Simple_repeat Simple_repeat 6 84 0 287 338 40 0 chr1 186175279 186175430 -96018234 - MIR3 SINE MIR -8 200 44 21 0 0 0 chr1 186175732 186175753 -96017911 + AT_rich Low_complexity Low_complexity 1 21 0 252 260 119 4 chr1 186176443 186176582 -96017082 - MIR SINE MIR -41 167 3 373 299 124 0 chr1 186178741 186178878 -96014786 - MIR3 SINE MIR -14 194 41 2317 112 0 0 chr1 186178965 186179269 -96014395 - AluSx SINE Alu -8 304 1 916 229 55 28 chr1 186179466 186179719 -96013945 + MIR SINE MIR 3 262 0 217 273 45 57 chr1 186179761 186179849 -96013815 - L3 LINE CR1 -32 1545 1459 185 304 0 14 chr1 186183255 186183324 -96010340 + MIR SINE MIR 31 98 -110 183 100 0 0 chr1 186184389 186184419 -96009245 + (CA)n Simple_repeat Simple_repeat 2 31 0 300 324 66 7 chr1 186184813 186184949 -96008715 + MIR SINE MIR 11 154 -108 629 176 0 0 chr1 186185384 186185486 -96008178 + U6 snRNA snRNA 1 102 -5 1818 182 3 3 chr1 186185486 186185782 -96007882 - AluJb SINE Alu -16 296 1 2220 113 3 3 chr1 186186365 186186667 -96006997 - AluSq SINE Alu -3 310 9 213 250 39 0 chr1 186187049 186187101 -96006563 + GA-rich Low_complexity Low_complexity 1 54 0 181 266 64 43 chr1 186188082 186188176 -96005488 - MIR SINE MIR -80 128 33 192 294 29 15 chr1 186188522 186188590 -96005074 - L2 LINE L2 -64 3208 3140 180 0 0 0 chr1 186189437 186189457 -96004207 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 411 352 60 13 chr1 186189462 186189695 -96003969 - MIR SINE MIR -9 253 10 355 277 101 0 chr1 186191716 186191835 -96001829 + MIR SINE MIR 21 151 -57 207 271 123 8 chr1 186193232 186193354 -96000310 + MIR3 SINE MIR 62 197 -11 624 219 0 34 chr1 186193486 186193632 -96000032 + MER5B DNA MER1_type 2 142 -36 2522 60 0 3 chr1 186193633 186193932 -95999732 - AluY SINE Alu -13 298 1 383 293 24 6 chr1 186194327 186194476 -95999188 - MIR SINE MIR -59 149 16 2013 128 13 16 chr1 186196033 186196338 -95997326 - AluSq SINE Alu -4 309 6 306 0 0 0 chr1 186197748 186197782 -95995882 + (TG)n Simple_repeat Simple_repeat 2 35 0 1710 111 18 0 chr1 186197879 186198105 -95995559 - AluSc SINE Alu -17 292 63 391 311 22 12 chr1 186198271 186198435 -95995229 - MIR SINE MIR -39 169 7 728 247 76 30 chr1 186198495 186198685 -95994979 - L1ME2 LINE L1 -2 6162 5982 2041 137 10 0 chr1 186198685 186198978 -95994686 - AluSx SINE Alu -16 296 1 728 247 76 30 chr1 186198978 186199155 -95994509 - L1ME2 LINE L1 -182 5982 5759 1864 127 15 0 chr1 186199302 186199570 -95994094 + AluSq SINE Alu 1 272 -41 2419 99 3 0 chr1 186200913 186201225 -95992439 - AluSp SINE Alu 0 313 1 216 136 102 0 chr1 186202617 186202676 -95990988 + (TTATA)n Simple_repeat Simple_repeat 1 65 0 302 247 35 0 chr1 186204474 186204559 -95989105 + MIR SINE MIR 81 168 -94 848 232 31 13 chr1 186204561 186204790 -95988874 - MIR SINE MIR 0 262 31 465 248 23 31 chr1 186205734 186205863 -95987801 + LTR67 LTR ERVL 428 555 -2 2441 93 0 0 chr1 186207236 186207538 -95986126 - AluSx SINE Alu -10 302 1 25 0 0 0 chr1 186207645 186207670 -95985994 + AT_rich Low_complexity Low_complexity 1 25 0 936 221 75 5 chr1 186208094 186208293 -95985371 + AluJo SINE Alu 68 280 -32 2304 112 0 0 chr1 186208793 186209098 -95984566 - AluSx SINE Alu -6 306 2 2505 38 0 7 chr1 186209118 186209405 -95984259 - AluSc SINE Alu -24 285 1 569 286 71 0 chr1 186210676 186210886 -95982778 + MIR SINE MIR 5 229 -33 235 218 0 18 chr1 186210985 186211040 -95982624 - L1MC/D LINE L1 -1884 5924 5871 345 344 83 18 chr1 186211186 186211404 -95982260 + L2 LINE L2 2864 3095 -177 355 277 101 0 chr1 186212769 186212888 -95980776 + MIR SINE MIR 21 151 -57 207 271 123 8 chr1 186214286 186214408 -95979256 + MIR3 SINE MIR 62 197 -11 624 219 0 34 chr1 186214540 186214686 -95978978 + MER5B DNA MER1_type 2 142 -36 2522 60 0 3 chr1 186214687 186214986 -95978678 - AluY SINE Alu -13 298 1 383 293 24 6 chr1 186215381 186215530 -95978134 - MIR SINE MIR -59 149 16 2150 83 47 17 chr1 186217087 186217387 -95976277 - AluSq SINE Alu -4 309 1 1065 145 149 8 chr1 186217417 186217666 -95975998 - MER33 DNA MER1_type -40 284 1 233 236 0 0 chr1 186217666 186217721 -95975943 - MIR3 SINE MIR -48 160 106 385 145 40 13 chr1 186219248 186219324 -95974340 + MER20 DNA MER1_type 1 78 -141 250 279 0 12 chr1 186219703 186219789 -95973875 - MIR SINE MIR -132 130 46 2305 42 4 0 chr1 186221158 186221420 -95972244 - AluY SINE Alu -12 299 37 415 275 140 45 chr1 186221932 186222154 -95971510 - MIR SINE MIR 0 262 20 324 257 105 0 chr1 186222315 186222420 -95971244 + MIR SINE MIR 31 146 -116 301 270 16 16 chr1 186223042 186223168 -95970496 + MIR SINE MIR 84 209 -53 424 155 0 0 chr1 186223605 186223676 -95969988 + Alu SINE Alu 227 297 -13 894 130 0 0 chr1 186224463 186224640 -95969024 + (CCTG)n Simple_repeat Simple_repeat 2 178 0 192 179 0 0 chr1 186224658 186224697 -95968967 + CT-rich Low_complexity Low_complexity 3 41 0 2251 104 51 23 chr1 186225946 186226300 -95967364 - THE1B LTR MaLR 0 364 1 38 75 0 0 chr1 186226545 186226625 -95967039 + AT_rich Low_complexity Low_complexity 1 80 0 2063 153 0 6 chr1 186226608 186226921 -95966743 - AluSx SINE Alu -1 311 1 329 293 33 47 chr1 186227171 186227321 -95966343 - LTR67 LTR ERVL -355 202 55 314 296 117 6 chr1 186228155 186228334 -95965330 - MIR SINE MIR -14 248 50 185 127 32 32 chr1 186228684 186228747 -95964917 + (TATAA)n Simple_repeat Simple_repeat 5 67 0 216 97 0 0 chr1 186228747 186228778 -95964886 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 57 0 0 chr1 186230202 186230237 -95963427 + AT_rich Low_complexity Low_complexity 1 35 0 472 223 115 0 chr1 186231152 186231291 -95962373 - L1 LINE L1 -3610 2536 2382 246 293 0 0 chr1 186233316 186233398 -95960266 + T-rich Low_complexity Low_complexity 1 82 0 211 244 0 0 chr1 186234247 186234292 -95959372 + T-rich Low_complexity Low_complexity 1 45 0 1315 83 0 0 chr1 186234803 186234972 -95958692 - AluSg/x SINE Alu -7 305 137 181 154 51 0 chr1 186235308 186235347 -95958317 - MIR SINE MIR -69 139 99 420 278 9 36 chr1 186236323 186236488 -95957176 - MIR SINE MIR -62 146 30 597 64 13 0 chr1 186236680 186236758 -95956906 + MADE1 DNA Mariner 2 80 0 289 294 29 20 chr1 186237956 186238058 -95955606 + MIR SINE MIR 13 115 -147 2829 16 0 0 chr1 186238421 186238727 -95954937 - AluYb8 SINE Alu -12 306 1 325 194 19 111 chr1 186240588 186240696 -95952968 - MIR SINE MIR -62 200 103 533 155 0 10 chr1 186241188 186241285 -95952379 - L1PA16 LINE L1 -2 6164 6069 395 223 92 65 chr1 186241497 186241681 -95951983 - L3 LINE CR1 -198 1379 1191 1257 155 97 0 chr1 186241789 186241996 -95951668 + AluJo SINE Alu 1 227 -85 203 186 51 34 chr1 186242122 186242181 -95951483 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 1281 138 0 0 chr1 186242463 186242652 -95951012 + L1PA15 LINE L1 5974 6162 -3 369 212 8 93 chr1 186243206 186243324 -95950340 - L2 LINE L2 -15 3298 3191 228 315 120 0 chr1 186244082 186244190 -95949474 - MIR SINE MIR -114 148 28 281 308 54 3 chr1 186244253 186244375 -95949289 - MIR SINE MIR -82 126 40 1584 145 46 46 chr1 186244625 186244941 -95948723 - AluJo SINE Alu 0 316 1 325 262 16 16 chr1 186245788 186245914 -95947750 - MIR SINE MIR -53 209 84 324 257 105 0 chr1 186246536 186246641 -95947023 - MIR SINE MIR -116 146 31 415 275 140 45 chr1 186246802 186247024 -95946640 + MIR SINE MIR 20 262 0 2203 69 4 0 chr1 186247534 186247808 -95945856 + AluY SINE Alu 37 311 0 2014 146 7 7 chr1 186248102 186248411 -95945253 + AluJb SINE Alu 1 309 -3 279 157 0 0 chr1 186250115 186250166 -95943498 + T-rich Low_complexity Low_complexity 1 51 0 229 261 0 29 chr1 186250618 186250687 -95942977 + C-rich Low_complexity Low_complexity 1 67 0 855 144 24 0 chr1 186251316 186251441 -95942223 + FLAM_C SINE Alu 4 131 -2 2293 106 3 0 chr1 186251837 186252138 -95941526 - AluSx SINE Alu -9 303 2 1922 164 23 11 chr1 186252604 186252951 -95940713 + MER46B DNA MER2_type 11 236 0 283 326 75 41 chr1 186253622 186253769 -95939895 - MIR SINE MIR -63 199 48 185 328 118 15 chr1 186254947 186255151 -95938513 + L2 LINE L2 1904 2128 -1186 394 304 9 9 chr1 186255194 186255309 -95938355 + L2 LINE L2 3155 3269 -3 251 239 125 0 chr1 186257307 186257395 -95936269 + L3 LINE CR1 1479 1577 0 327 324 65 18 chr1 186257732 186257902 -95935762 + MIR SINE MIR 11 188 -74 588 285 101 4 chr1 186257904 186258132 -95935532 - MIR SINE MIR 0 262 13 463 268 107 5 chr1 186259583 186259807 -95933857 - MIR SINE MIR -1 261 15 446 273 58 0 chr1 186261680 186261801 -95931863 + MIR SINE MIR 61 188 -74 203 293 192 0 chr1 186262290 186262389 -95931275 + MER5A DNA MER1_type 49 166 -23 1623 178 37 0 chr1 186263846 186264115 -95929549 - 7SLRNA srpRNA srpRNA -21 299 21 21 0 0 0 chr1 186265402 186265423 -95928241 + AT_rich Low_complexity Low_complexity 1 21 0 1305 162 9 5 chr1 186265859 186266075 -95927589 - MER20 DNA MER1_type -1 218 2 297 0 0 0 chr1 186268214 186268247 -95925417 + (TG)n Simple_repeat Simple_repeat 1 33 0 276 30 0 0 chr1 186268246 186268279 -95925385 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 388 242 102 123 chr1 186269133 186269214 -95924450 - MIR SINE MIR -10 252 171 1711 175 13 6 chr1 186269214 186269529 -95924135 - L1PA16 LINE L1 -3 6163 5847 388 242 102 123 chr1 186269529 186269691 -95923973 - MIR SINE MIR -91 171 14 348 284 63 16 chr1 186269719 186269846 -95923818 - L2 LINE L2 -1 3271 3139 365 283 0 10 chr1 186270867 186270966 -95922698 + MIR SINE MIR 164 261 -1 2402 100 3 0 chr1 186271219 186271530 -95922134 - AluSp SINE Alu 0 313 2 2412 84 0 0 chr1 186272085 186272383 -95921281 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 186272995 186273017 -95920647 + AT_rich Low_complexity Low_complexity 1 22 0 260 206 0 29 chr1 186275054 186275122 -95918542 - MIR3 SINE MIR -3 205 140 184 316 194 32 chr1 186275560 186275715 -95917949 - MIR3 SINE MIR -6 202 23 196 250 18 0 chr1 186275770 186275826 -95917838 + MIR SINE MIR 97 153 -109 282 205 57 115 chr1 186275850 186275972 -95917692 + L2 LINE L2 3158 3272 0 339 305 38 0 chr1 186276367 186276409 -95917255 + L2 LINE L2 3205 3244 -69 196 308 0 0 chr1 186276409 186276461 -95917203 + MIR SINE MIR 206 257 -5 339 305 38 0 chr1 186276461 186276472 -95917192 + L2 LINE L2 3244 3313 0 760 186 29 14 chr1 186277396 186277508 -95916156 + FLAM_C SINE Alu 2 118 -194 387 0 0 0 chr1 186277508 186277551 -95916113 + (CA)n Simple_repeat Simple_repeat 2 44 0 760 186 29 14 chr1 186277551 186277578 -95916086 + FLAM_C SINE Alu 118 143 -169 426 260 155 20 chr1 186278743 186278943 -95914721 - MIR SINE MIR -1 261 35 328 233 137 62 chr1 186280326 186280472 -95913192 + MER5B DNA MER1_type 22 178 0 198 0 0 0 chr1 186282251 186282273 -95911391 + (TG)n Simple_repeat Simple_repeat 2 23 0 566 258 16 0 chr1 186282671 186282799 -95910865 - L2 LINE L2 -15 3298 3169 225 231 0 0 chr1 186283424 186283463 -95910201 + C-rich Low_complexity Low_complexity 5 43 0 197 284 30 30 chr1 186283842 186283909 -95909755 - MIR3 SINE MIR -15 193 127 1457 120 37 5 chr1 186285197 186285414 -95908250 + MER30 DNA MER1_type 7 230 0 360 0 0 0 chr1 186285492 186285532 -95908132 + (T)n Simple_repeat Simple_repeat 1 40 0 198 239 265 8 chr1 186286578 186286695 -95906969 - MIR SINE MIR -46 216 70 1805 163 31 0 chr1 186288865 186289154 -95904510 + AluJo SINE Alu 1 298 -14 210 213 21 0 chr1 186290295 186290342 -95903322 + (TA)n Simple_repeat Simple_repeat 1 48 0 746 271 27 38 chr1 186290344 186290606 -95903058 - MIR SINE MIR -2 260 2 474 304 52 11 chr1 186290669 186290860 -95902804 - MIR SINE MIR -1 261 63 208 349 0 0 chr1 186291879 186291945 -95901719 + (TG)n Simple_repeat Simple_repeat 2 67 0 207 377 100 0 chr1 186293119 186293350 -95900314 + L2 LINE L2 1192 1445 -1869 290 295 33 25 chr1 186294204 186294326 -95899338 - MIR3 SINE MIR -5 203 81 234 0 0 0 chr1 186295674 186295700 -95897964 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2329 91 0 0 chr1 186296813 186297111 -95896553 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 186297727 186297749 -95895915 + AT_rich Low_complexity Low_complexity 1 22 0 260 304 104 39 chr1 186298269 186298499 -95895165 + L2 LINE L2 1831 2075 -1239 218 264 92 35 chr1 186298603 186298690 -95894974 + L2 LINE L2 3136 3227 -45 23 68 0 0 chr1 186299094 186299138 -95894526 + AT_rich Low_complexity Low_complexity 1 44 0 294 282 14 0 chr1 186299920 186299991 -95893673 - L2 LINE L2 -5 3267 3196 2031 193 28 133 chr1 186302740 186302839 -95890825 - L1ME1 LINE L1 -2 6164 6056 2284 114 13 0 chr1 186302839 186303147 -95890517 - AluSx SINE Alu 0 312 1 2031 193 28 133 chr1 186303147 186303676 -95889988 - L1ME1 LINE L1 -110 6056 5611 1243 186 89 30 chr1 186303676 186303945 -95889719 - AluJo SINE Alu -26 286 2 2031 193 28 133 chr1 186303945 186303999 -95889665 - L1ME1 LINE L1 -555 5611 5553 339 85 0 0 chr1 186305116 186305163 -95888501 + (TG)n Simple_repeat Simple_repeat 2 48 0 194 234 128 0 chr1 186305751 186305798 -95887866 - L2 LINE L2 -86 3186 3134 321 234 0 16 chr1 186305962 186306026 -95887638 - L2 LINE L2 -17 3255 3193 210 311 311 0 chr1 186306029 186306135 -95887529 - L2 LINE L2 0 3272 3134 354 61 0 0 chr1 186307096 186307145 -95886519 + (TG)n Simple_repeat Simple_repeat 2 50 0 2105 134 0 0 chr1 186307629 186307919 -95885745 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr1 186308687 186308723 -95884941 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 186309010 186309031 -95884633 + AT_rich Low_complexity Low_complexity 1 21 0 689 273 39 71 chr1 186309109 186309391 -95884273 - MLT1J LTR MaLR -230 281 9 279 241 0 0 chr1 186309969 186310027 -95883637 + L2 LINE L2 3241 3298 -15 429 274 52 15 chr1 186310357 186310492 -95883172 - MIR SINE MIR -74 188 49 1800 122 0 0 chr1 186311739 186311985 -95881679 - AluSx SINE Alu -5 307 62 717 88 0 0 chr1 186311985 186312076 -95881588 - AluSg1 SINE Alu -217 92 2 332 335 67 11 chr1 186312362 186312541 -95881123 - MIR SINE MIR -62 200 12 233 164 15 75 chr1 186312672 186312739 -95880925 - L1MC4 LINE L1 -1340 6702 6640 187 300 40 0 chr1 186312891 186312941 -95880723 + MIR SINE MIR 70 121 -87 189 147 0 0 chr1 186315034 186315068 -95878596 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 1412 151 16 25 chr1 186315245 186315490 -95878174 + AluJo SINE Alu 60 302 -10 324 0 0 0 chr1 186315515 186315551 -95878113 + (TG)n Simple_repeat Simple_repeat 2 37 0 1961 179 72 60 chr1 186316325 186316401 -95877263 + Charlie1b DNA MER1_type 32 106 -2655 2420 84 3 0 chr1 186316401 186316700 -95876964 + AluSx SINE Alu 1 300 -12 1961 179 72 60 chr1 186316700 186316949 -95876715 + Charlie1b DNA MER1_type 106 367 -2394 2195 107 3 3 chr1 186316949 186317249 -95876415 - AluSx SINE Alu -12 300 1 1961 179 72 60 chr1 186317249 186317408 -95876256 + Charlie1b DNA MER1_type 367 523 0 396 0 0 0 chr1 186317574 186317618 -95876046 + (TG)n Simple_repeat Simple_repeat 1 44 0 25 31 0 0 chr1 186317867 186317899 -95875765 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 186318591 186318614 -95875050 + AT_rich Low_complexity Low_complexity 1 23 0 237 178 0 0 chr1 186320030 186320075 -95873589 + (TG)n Simple_repeat Simple_repeat 1 45 0 1792 114 46 0 chr1 186320558 186320820 -95872844 - AluSp SINE Alu -39 274 1 228 67 0 0 chr1 186321370 186321400 -95872264 + (A)n Simple_repeat Simple_repeat 1 30 0 239 304 59 44 chr1 186322438 186322573 -95871091 - L2 LINE L2 -8 3305 3169 23 0 0 0 chr1 186323073 186323096 -95870568 + AT_rich Low_complexity Low_complexity 1 23 0 340 213 0 0 chr1 186324204 186324265 -95869399 + L2 LINE L2 3253 3313 0 373 304 73 27 chr1 186324322 186324542 -95869122 + L1ME3A LINE L1 5933 6162 -8 553 164 8 8 chr1 186325741 186325863 -95867801 + CT-rich Low_complexity Low_complexity 3 124 0 2603 37 3 0 chr1 186326827 186327122 -95866542 - AluY SINE Alu -15 296 1 21 0 0 0 chr1 186327398 186327419 -95866245 + AT_rich Low_complexity Low_complexity 1 21 0 256 265 83 38 chr1 186328346 186328478 -95865186 - MIR SINE MIR -41 221 84 875 286 55 55 chr1 186328570 186328913 -95864751 - MLT1J LTR MaLR -105 406 64 730 268 32 27 chr1 186330923 186331143 -95862521 - MIR SINE MIR -6 256 36 21 0 0 0 chr1 186331307 186331328 -95862336 + AT_rich Low_complexity Low_complexity 1 21 0 250 247 14 14 chr1 186331923 186331996 -95861668 - MIR SINE MIR -107 101 29 2148 92 24 10 chr1 186332077 186332394 -95861270 - AluSg SINE Alu 0 335 15 800 237 24 0 chr1 186332584 186332753 -95860911 - MER45A DNA AcHobo 0 178 6 196 340 99 7 chr1 186333575 186333716 -95859948 - MIR3 SINE MIR -52 156 3 2009 136 3 7 chr1 186334167 186334462 -95859202 + AluSx SINE Alu 17 310 -2 291 54 0 0 chr1 186338616 186338653 -95855011 + (CA)n Simple_repeat Simple_repeat 2 38 0 324 0 0 0 chr1 186342279 186342315 -95851349 + (TG)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr1 186342322 186342359 -95851305 + (GA)n Simple_repeat Simple_repeat 1 37 0 1865 140 45 0 chr1 186342533 186342819 -95850845 + AluSx SINE Alu 1 299 -13 1963 153 24 0 chr1 186343741 186344036 -95849628 + AluJb SINE Alu 1 302 -10 352 202 106 19 chr1 186344305 186344409 -95849255 + MIR SINE MIR 76 188 -74 676 36 0 0 chr1 186344422 186344505 -95849159 - AluY SINE Alu -11 300 218 262 106 21 0 chr1 186347415 186347462 -95846202 - MLT1J LTR MaLR -35 476 429 23 0 0 0 chr1 186348339 186348362 -95845302 + AT_rich Low_complexity Low_complexity 1 23 0 186 191 0 0 chr1 186348767 186348809 -95844855 + (TG)n Simple_repeat Simple_repeat 2 43 0 251 122 0 24 chr1 186350103 186350144 -95843520 + L2 LINE L2 3258 3297 -16 252 0 0 0 chr1 186352061 186352089 -95841575 + (TG)n Simple_repeat Simple_repeat 1 28 0 316 253 13 0 chr1 186356002 186356081 -95837583 + CT-rich Low_complexity Low_complexity 2 81 0 879 150 154 95 chr1 186357291 186357351 -95836313 - L1MB3 LINE L1 -2 6181 6126 1806 82 4 31 chr1 186357351 186357608 -95836056 - AluSc SINE Alu -35 274 25 879 150 154 95 chr1 186357608 186357800 -95835864 - L1MB3 LINE L1 -57 6126 5914 210 71 0 0 chr1 186358112 186358140 -95835524 + (CGG)n Simple_repeat Simple_repeat 1 28 0 2291 128 0 0 chr1 186359297 186359682 -95833982 - AluSx SINE Alu 0 385 1 265 325 26 26 chr1 186360635 186360752 -95832912 - MIR SINE MIR -99 163 47 2112 101 31 0 chr1 186361527 186361814 -95831850 - AluY SINE Alu -14 297 2 594 231 49 7 chr1 186363278 186363456 -95830208 - MIR SINE MIR -59 203 4 301 281 37 22 chr1 186364069 186364204 -95829460 + MIR3 SINE MIR 51 187 -21 2593 48 0 3 chr1 186364716 186365026 -95828638 + AluY SINE Alu 1 309 -2 1665 176 39 21 chr1 186367680 186368016 -95825648 - MLT1E1 LTR MaLR 0 654 313 260 218 18 0 chr1 186368042 186368097 -95825567 - MLT1E1 LTR MaLR -438 216 161 270 0 0 0 chr1 186368270 186368300 -95825364 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 189 346 10 69 chr1 186368647 186368748 -95824916 - L2 LINE L2 -23 3249 3155 224 327 136 9 chr1 186368924 186369034 -95824630 - L2 LINE L2 -9 3263 3140 347 318 9 9 chr1 186369318 186369428 -95824236 + MIR SINE MIR 41 150 -112 814 179 0 67 chr1 186369930 186370109 -95823555 - MER3 DNA MER1_type -41 168 2 183 80 0 0 chr1 186370311 186370336 -95823328 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 187 280 272 0 chr1 186372123 186372248 -95821416 + MIR SINE MIR 38 196 -66 2307 107 0 0 chr1 186372484 186372775 -95820889 + AluSg SINE Alu 1 291 -19 21 0 0 0 chr1 186374643 186374664 -95819000 + AT_rich Low_complexity Low_complexity 1 21 0 566 243 101 30 chr1 186375349 186375518 -95818146 + MER5A DNA MER1_type 9 189 0 221 336 97 13 chr1 186375519 186375745 -95817919 + L2 LINE L2 2164 2408 -906 2123 112 3 0 chr1 186380441 186380752 -95812912 + AluSg SINE Alu 1 312 0 2302 112 26 47 chr1 186381470 186381853 -95811811 - THE1C LTR MaLR 0 375 1 1047 227 5 19 chr1 186382529 186382745 -95810919 + MER20 DNA MER1_type 6 218 -1 213 39 0 0 chr1 186382761 186382787 -95810877 + (TTA)n Simple_repeat Simple_repeat 2 27 0 205 186 0 0 chr1 186382809 186382852 -95810812 + T-rich Low_complexity Low_complexity 1 43 0 249 33 0 0 chr1 186385291 186385321 -95808343 + (TTA)n Simple_repeat Simple_repeat 1 30 0 211 333 137 0 chr1 186388507 186388609 -95805055 + L3 LINE CR1 974 1089 -488 714 329 98 25 chr1 186388636 186388995 -95804669 + L3 LINE CR1 1169 1553 -24 180 226 169 105 chr1 186390297 186390421 -95803243 + MIR SINE MIR 67 198 -64 183 299 93 52 chr1 186391331 186391428 -95802236 + L2 LINE L2 3172 3272 0 239 245 117 11 chr1 186392038 186392132 -95801532 + MIR3 SINE MIR 99 202 -6 2270 125 0 0 chr1 186392374 186392686 -95800978 - AluSx SINE Alu 0 312 1 318 132 0 0 chr1 186393767 186393820 -95799844 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 258 81 0 0 chr1 186394234 186394271 -95799393 + (TG)n Simple_repeat Simple_repeat 2 38 0 252 337 20 10 chr1 186394292 186394390 -95799274 + MIR3 SINE MIR 82 180 -28 596 170 0 9 chr1 186395451 186395557 -95798107 + MER3 DNA MER1_type 5 109 -100 2041 100 53 10 chr1 186395557 186395857 -95797807 + L1PA11 LINE L1 5862 6174 0 475 223 0 9 chr1 186396024 186396136 -95797528 + MER3 DNA MER1_type 99 209 0 260 262 0 0 chr1 186396082 186396143 -95797521 - MER3 DNA MER1_type -108 101 41 * 21 0 0 0 chr1 186396230 186396251 -95797413 + AT_rich Low_complexity Low_complexity 1 21 0 491 235 208 0 chr1 186396858 186397007 -95796657 + MER5A DNA MER1_type 10 189 0 2259 72 0 4 chr1 186397443 186397722 -95795942 - AluY SINE Alu -4 307 30 28 71 0 0 chr1 186398683 186398739 -95794925 + AT_rich Low_complexity Low_complexity 1 56 0 217 235 176 0 chr1 186399092 186399160 -95794504 - MIR SINE MIR -2 260 181 222 304 152 18 chr1 186399672 186399784 -95793880 + L2 LINE L2 3137 3263 -9 234 242 0 0 chr1 186400192 186400258 -95793406 + (CAGT)n Simple_repeat Simple_repeat 4 69 0 1821 156 3 3 chr1 186400270 186400552 -95793112 - AluSx SINE Alu -30 282 1 185 321 24 0 chr1 186400558 186400642 -95793022 + MIR3 SINE MIR 117 202 -6 1271 326 107 27 chr1 186402103 186402832 -95790832 - L3 LINE CR1 -80 1497 711 577 292 51 10 chr1 186402895 186403090 -95790574 - MIR SINE MIR -54 208 6 445 326 165 21 chr1 186403093 186403480 -95790184 - L3 LINE CR1 -905 672 230 2197 127 3 0 chr1 186404397 186404705 -95788959 - AluSx SINE Alu -3 309 1 266 297 102 8 chr1 186404920 186405048 -95788616 - MIR3 SINE MIR -5 203 64 194 0 39 0 chr1 186405203 186405229 -95788435 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1922 141 14 0 chr1 186405232 186405508 -95788156 - AluJo SINE Alu -30 282 3 21 0 0 0 chr1 186405891 186405912 -95787752 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 186406010 186406031 -95787633 + AT_rich Low_complexity Low_complexity 1 21 0 326 234 13 0 chr1 186406424 186406501 -95787163 - MIR SINE MIR -6 256 179 480 264 43 91 chr1 186406856 186407064 -95786600 - MIR SINE MIR -5 257 60 2128 133 0 0 chr1 186407247 186407541 -95786123 + AluSx SINE Alu 1 294 -18 1051 210 30 60 chr1 186407584 186407917 -95785747 - L1ME1 LINE L1 -5 6161 5839 566 286 97 0 chr1 186407986 186408182 -95785482 + MIR SINE MIR 31 245 -17 35 0 0 0 chr1 186408187 186408222 -95785442 + AT_rich Low_complexity Low_complexity 1 35 0 330 287 238 17 chr1 186408293 186408474 -95785190 - MIR SINE MIR -32 230 10 349 273 139 21 chr1 186409337 186409524 -95784140 - L2 LINE L2 -947 2367 2159 223 357 71 10 chr1 186410053 186410151 -95783513 - L2 LINE L2 -2 3270 3167 801 103 0 0 chr1 186411155 186411272 -95782392 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 307 111 16 32 chr1 186411405 186411468 -95782196 + (GGAAA)n Simple_repeat Simple_repeat 4 65 0 435 282 24 32 chr1 186411928 186412052 -95781612 - MIR3 SINE MIR -49 159 37 24 67 0 0 chr1 186412401 186412446 -95781218 + AT_rich Low_complexity Low_complexity 1 45 0 783 203 0 0 chr1 186412446 186412564 -95781100 - FLAM_C SINE Alu -15 118 1 243 0 0 0 chr1 186412666 186412693 -95780971 + (CTATG)n Simple_repeat Simple_repeat 2 28 0 188 243 135 0 chr1 186412720 186412794 -95780870 + MIR3 SINE MIR 111 194 -14 628 279 25 6 chr1 186413859 186414017 -95779647 + MIR SINE MIR 51 211 -51 392 295 14 22 chr1 186414441 186414580 -95779084 - 7SK RNA RNA -42 151 14 549 338 68 8 chr1 186414821 186415055 -95778609 - MIR SINE MIR -11 251 4 242 306 116 20 chr1 186415219 186415366 -95778298 + MIR3 SINE MIR 16 176 -32 364 230 230 16 chr1 186415396 186415522 -95778142 + MIR SINE MIR 25 177 -85 * 1064 249 84 22 chr1 186415504 186415873 -95777791 + L2 LINE L2 2922 3313 0 183 323 0 15 chr1 186415879 186415944 -95777720 + MIR SINE MIR 189 252 -10 278 367 65 7 chr1 186416181 186416320 -95777344 + L3 LINE CR1 1331 1477 -100 4440 328 50 26 chr1 186416399 186417617 -95776047 + MERVL LTR ERVL 1585 2772 -2713 1761 178 23 0 chr1 186417617 186417920 -95775744 + AluJb SINE Alu 3 312 0 4440 328 50 26 chr1 186417920 186419911 -95773753 + MERVL LTR ERVL 2772 4889 -596 1032 208 10 138 chr1 186420337 186420488 -95773176 + MLT2B1 LTR ERVL 1 170 -350 2429 68 0 0 chr1 186420488 186420782 -95772882 + AluY SINE Alu 11 304 -7 1032 208 10 138 chr1 186420782 186421330 -95772334 + MLT2B1 LTR ERVL 170 520 0 204 40 0 0 chr1 186421387 186421412 -95772252 + (T)n Simple_repeat Simple_repeat 1 25 0 261 208 0 0 chr1 186422466 186422538 -95771126 + (CA)n Simple_repeat Simple_repeat 2 73 0 331 247 82 0 chr1 186423511 186423584 -95770080 - MIR3 SINE MIR -9 199 121 579 266 30 45 chr1 186423599 186423798 -95769866 - MIR SINE MIR -52 210 15 193 295 33 0 chr1 186424612 186424673 -95768991 + L2 LINE L2 3239 3301 -12 647 251 26 26 chr1 186425648 186425839 -95767825 + MIR SINE MIR 18 208 -54 2499 71 3 0 chr1 186426214 186426524 -95767140 + AluY SINE Alu 1 311 0 1458 154 150 0 chr1 186426640 186426907 -95766757 + AluJb SINE Alu 1 307 -5 5624 158 19 67 chr1 186427578 186428765 -95764899 + L1P LINE L1 4084 5214 -932 201 74 0 0 chr1 186428955 186428982 -95764682 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2326 114 0 3 chr1 186429128 186429436 -95764228 - AluSx SINE Alu -5 307 1 302 408 33 5 chr1 186429440 186429624 -95764040 - L3b LINE CR1 -265 1318 1130 1238 268 141 36 chr1 186429706 186430421 -95763243 - L1ME4a LINE L1 -1 6120 5328 22 0 0 0 chr1 186430647 186430669 -95762995 + AT_rich Low_complexity Low_complexity 1 22 0 315 354 48 29 chr1 186433722 186433928 -95759736 + L2 LINE L2 2746 2955 -359 282 295 84 74 chr1 186433968 186434158 -95759506 + L2 LINE L2 3107 3298 -15 252 116 274 8 chr1 186435091 186435180 -95758484 + MER53 DNA DNA 1 186 -3 260 355 137 0 chr1 186435768 186435892 -95757772 - L2 LINE L2 -9 3263 3123 251 361 39 0 chr1 186436182 186436312 -95757352 - L2 LINE L2 -520 2794 2660 429 239 28 9 chr1 186438181 186438290 -95755374 + MER81 DNA DNA 1 111 -3 258 105 0 0 chr1 186438884 186438922 -95754742 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 384 179 0 0 chr1 186439165 186439243 -95754421 + (TCTA)n Simple_repeat Simple_repeat 2 79 0 229 274 12 107 chr1 186439250 186439418 -95754246 + L1ME4a LINE L1 5956 6107 -14 509 311 28 34 chr1 186440902 186441079 -95752585 - MIR3 SINE MIR 0 208 33 241 182 23 0 chr1 186441245 186441289 -95752375 - L2 LINE L2 -18 3254 3210 210 290 121 24 chr1 186443087 186443211 -95750453 + MIR SINE MIR 62 197 -65 23 0 0 0 chr1 186444872 186444895 -95748769 + AT_rich Low_complexity Low_complexity 1 23 0 426 308 114 26 chr1 186447755 186447982 -95745682 - MLT1J2 LTR MaLR 0 450 204 1840 123 99 0 chr1 186448713 186448997 -95744667 - AluSx SINE Alu 0 312 1 755 109 0 0 chr1 186449022 186449123 -95744541 + HY3 scRNA scRNA 1 101 0 27 0 0 0 chr1 186449123 186449150 -95744514 + AT_rich Low_complexity Low_complexity 1 27 0 1893 149 14 3 chr1 186449737 186450032 -95743632 - AluJo SINE Alu -9 303 6 24 0 0 0 chr1 186451252 186451276 -95742388 + AT_rich Low_complexity Low_complexity 1 24 0 2647 242 54 39 chr1 186451809 186452545 -95741119 - MER21B LTR ERV1 -111 752 6 1060 209 0 0 chr1 186452546 186452737 -95740927 + MIR SINE MIR 70 260 -2 297 0 0 0 chr1 186453239 186453272 -95740392 + (CA)n Simple_repeat Simple_repeat 1 33 0 237 151 0 75 chr1 186454493 186454546 -95739118 - L2 LINE L2 -3 3269 3221 187 244 0 111 chr1 186455252 186455342 -95738322 + L2 LINE L2 2868 2947 -325 238 330 6 39 chr1 186455647 186455829 -95737835 + GA-rich Low_complexity Low_complexity 2 177 0 1422 270 39 32 chr1 186456281 186456980 -95736684 - L2 LINE L2 -8 3305 2591 243 333 74 37 chr1 186456997 186457132 -95736532 + L2 LINE L2 2898 3037 -235 488 309 110 54 chr1 186458159 186458641 -95735023 - L2 LINE L2 -1 3312 2804 293 203 43 152 chr1 186459869 186460007 -95733657 - MIR SINE MIR -51 211 89 287 176 0 0 chr1 186460008 186460059 -95733605 + L2 LINE L2 3222 3272 0 679 264 130 0 chr1 186460308 186460516 -95733148 - MIR SINE MIR -24 238 4 23 33 0 0 chr1 186461586 186461616 -95732048 + AT_rich Low_complexity Low_complexity 1 30 0 397 299 104 43 chr1 186461868 186462099 -95731565 + MIR SINE MIR 1 245 -17 291 100 0 0 chr1 186463959 186463999 -95729665 + 5S rRNA rRNA 3 42 -79 798 256 68 52 chr1 186464319 186464628 -95729036 - L2 LINE L2 -2 3311 2998 1819 157 0 0 chr1 186466322 186466596 -95727068 - AluJb SINE Alu -38 274 1 252 0 0 0 chr1 186466688 186466716 -95726948 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 270 0 0 0 chr1 186466715 186466745 -95726919 + (TA)n Simple_repeat Simple_repeat 1 30 0 251 191 32 0 chr1 186466773 186466836 -95726828 + (TA)n Simple_repeat Simple_repeat 1 65 0 252 59 0 0 chr1 186466837 186466871 -95726793 + (GA)n Simple_repeat Simple_repeat 1 34 0 2779 118 0 6 chr1 186468002 186468368 -95725296 + THE1B LTR MaLR 1 364 0 903 142 0 0 chr1 186468401 186468528 -95725136 - AluSq/x SINE Alu -185 127 1 1650 172 57 3 chr1 186469358 186469654 -95724010 + AluJo SINE Alu 1 312 0 189 74 0 0 chr1 186469688 186469715 -95723949 + (CA)n Simple_repeat Simple_repeat 2 28 0 666 235 34 50 chr1 186469829 186470008 -95723656 - MIR SINE MIR -59 203 28 1671 163 10 14 chr1 186470729 186471018 -95722646 + AluJo SINE Alu 1 288 -24 4612 108 22 2 chr1 186471922 186472544 -95721120 - MER41B LTR ERV1 0 635 1 357 268 34 89 chr1 186472720 186472780 -95720884 - MIR3 SINE MIR -4 204 142 1330 84 0 0 chr1 186472780 186472946 -95720718 - L1PA14 LINE L1 -1 6160 5995 357 268 34 89 chr1 186472946 186473064 -95720600 - MIR3 SINE MIR -66 142 36 1430 171 0 0 chr1 186473443 186473665 -95719999 - AluJo SINE Alu -3 309 88 2039 171 36 68 chr1 186473763 186474207 -95719457 - LTR49 LTR ERV1 -72 537 107 2461 201 38 58 chr1 186474439 186474970 -95718694 - MLT2B1 LTR ERVL 0 520 1 231 313 58 31 chr1 186475011 186475302 -95718362 + L1MC/D LINE L1 5633 5931 -1877 1222 176 14 14 chr1 186475936 186476152 -95717512 - MER20 DNA MER1_type -3 216 1 833 229 80 0 chr1 186476202 186476390 -95717274 - MIR SINE MIR -1 261 59 2503 110 3 0 chr1 186477384 186477720 -95715944 - L1PA15 LINE L1 -7 6158 5822 324 342 117 20 chr1 186477763 186477959 -95715705 + MIR SINE MIR 48 262 0 191 298 0 0 chr1 186478012 186478059 -95715605 + L2 LINE L2 3210 3256 -16 204 300 9 45 chr1 186478101 186478211 -95715453 - MIR SINE MIR -61 147 42 223 260 0 0 chr1 186479178 186479228 -95714436 + GA-rich Low_complexity Low_complexity 2 51 0 549 217 17 0 chr1 186480006 186480121 -95713543 + L2 LINE L2 2257 2373 -941 1895 193 154 14 chr1 186480136 186480576 -95713088 + MER44D DNA MER2_type 49 605 0 1058 264 39 66 chr1 186480576 186481391 -95712273 + L2 LINE L2 2523 3312 -1 313 315 43 31 chr1 186481996 186482158 -95711506 + MIR SINE MIR 12 175 -87 1110 83 0 7 chr1 186482276 186482421 -95711243 - L1PB1 LINE L1 -3 6148 6005 270 329 7 64 chr1 186483150 186483290 -95710374 - MLT1J LTR MaLR -92 419 288 313 292 21 88 chr1 186483537 186483729 -95709935 - MLT1J LTR MaLR -330 181 3 2050 87 4 0 chr1 186484768 186485033 -95708631 - AluY SINE Alu -7 304 39 21 0 0 0 chr1 186485459 186485480 -95708184 + AT_rich Low_complexity Low_complexity 1 21 0 378 213 38 0 chr1 186486053 186486133 -95707531 - MER117 DNA MER1_type -114 83 1 21 36 0 0 chr1 186486835 186486863 -95706801 + AT_rich Low_complexity Low_complexity 1 28 0 208 345 77 54 chr1 186487228 186487396 -95706268 + MIR3 SINE MIR 37 208 0 648 266 68 14 chr1 186487669 186487891 -95705773 - MIR SINE MIR 0 262 29 1817 268 94 36 chr1 186488461 186489181 -95704483 + L2 LINE L2 2027 2788 -526 537 295 147 36 chr1 186489181 186489564 -95704100 - MLT1L LTR MaLR 0 511 173 276 317 24 0 chr1 186489750 186489832 -95703832 + L2 LINE L2 3186 3269 -3 353 310 163 27 chr1 186490389 186490573 -95703091 + MIR SINE MIR 47 255 -7 280 373 6 25 chr1 186491228 186491389 -95702275 + MIR3 SINE MIR 42 199 -9 225 338 23 38 chr1 186492139 186492272 -95701392 - L2 LINE L2 -173 3099 2969 403 324 75 64 chr1 186492962 186493401 -95700263 - L2 LINE L2 -3 3310 2867 448 323 0 24 chr1 186493462 186493626 -95700038 + L2 LINE L2 2362 2521 -793 435 148 12 25 chr1 186493653 186493734 -95699930 + L1M4 LINE L1 54 133 -6409 * 3754 224 28 19 chr1 186493731 186494792 -95698872 + L1M4 LINE L1 2953 4023 -2621 673 241 7 35 chr1 186494796 186494941 -95698723 + FLAM_A SINE Alu 1 141 -1 6447 250 38 15 chr1 186494951 186496337 -95697327 + L1M4 LINE L1 4026 5480 -1202 2581 147 108 29 chr1 186496337 186496377 -95697287 - MLT2B1 LTR ERVL 0 520 485 180 0 0 0 chr1 186496377 186496397 -95697267 + (CA)n Simple_repeat Simple_repeat 2 21 0 2581 147 108 29 chr1 186496397 186496838 -95696826 - MLT2B1 LTR ERVL -35 485 1 6447 250 38 15 chr1 186496838 186497442 -95696222 + L1M4 LINE L1 5480 6068 -614 379 146 37 61 chr1 186497442 186497524 -95696140 + L2 LINE L2 3234 3313 0 280 342 103 19 chr1 186498642 186498797 -95694867 + MIR SINE MIR 13 180 -82 207 0 0 0 chr1 186499328 186499351 -95694313 + (A)n Simple_repeat Simple_repeat 1 23 0 318 226 24 12 chr1 186500404 186500488 -95693176 + LTR16C LTR ERVL 317 401 -90 308 227 454 0 chr1 186500536 186500796 -95692868 + L2 LINE L2 1903 2280 -1034 414 353 77 14 chr1 186500857 186501078 -95692586 - MIR SINE MIR -26 236 2 337 280 0 0 chr1 186501121 186501196 -95692468 - MIR3 SINE MIR -3 205 131 333 328 0 9 chr1 186503441 186503557 -95690107 + MIR3 SINE MIR 71 185 -23 215 133 22 0 chr1 186504265 186504310 -95689354 + GA-rich Low_complexity Low_complexity 3 48 0 812 96 10 0 chr1 186505251 186505355 -95688309 - AluSq/x SINE Alu -206 106 2 237 33 0 0 chr1 186505411 186505441 -95688223 + (TG)n Simple_repeat Simple_repeat 2 31 0 292 271 14 0 chr1 186506505 186506575 -95687089 + MER81 DNA DNA 41 111 -3 373 305 51 51 chr1 186506824 186507021 -95686643 + MIR SINE MIR 8 204 -58 1346 284 126 34 chr1 186507071 186507998 -95685666 - L2 LINE L2 -1 3312 2299 489 244 38 0 chr1 186509073 186509204 -95684460 + MER103 DNA DNA 3 138 -28 429 313 102 17 chr1 186509731 186509907 -95683757 - L3 LINE CR1 0 1577 1387 201 276 35 0 chr1 186510497 186510555 -95683109 + L2 LINE L2 2433 2492 -822 198 209 0 0 chr1 186511135 186511178 -95682486 + (TATG)n Simple_repeat Simple_repeat 4 46 0 224 364 13 0 chr1 186512203 186512280 -95681384 + MIR SINE MIR 170 247 -15 368 286 28 62 chr1 186512849 186512922 -95680742 - MER5B DNA MER1_type 0 178 104 1283 233 82 0 chr1 186512922 186513239 -95680425 + MER2 DNA MER2_type 1 343 -1 368 286 28 62 chr1 186513239 186513343 -95680321 - MER5B DNA MER1_type -74 104 7 231 208 83 0 chr1 186514316 186514364 -95679300 + L2 LINE L2 3186 3237 -76 281 351 65 6 chr1 186514513 186514681 -95678983 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chr1 186514697 186514719 -95678945 + AT_rich Low_complexity Low_complexity 1 22 0 180 225 0 84 chr1 186515087 186515158 -95678506 - MER5A DNA MER1_type -1 188 124 271 365 39 33 chr1 186516120 186516301 -95677363 + MER5A DNA MER1_type 1 182 -7 1035 183 43 47 chr1 186516383 186516618 -95677046 + MIR SINE MIR 28 261 -1 2410 83 3 0 chr1 186516736 186517102 -95676562 - AluSx SINE Alu 0 367 1 238 287 159 38 chr1 186517281 186517438 -95676226 - MIR3 SINE MIR -10 198 23 354 289 94 8 chr1 186518849 186518977 -95674687 + MIR SINE MIR 4 142 -66 332 272 37 0 chr1 186519375 186519456 -95674208 - L2 LINE L2 -46 3267 3184 226 146 18 18 chr1 186519643 186519698 -95673966 + CT-rich Low_complexity Low_complexity 1 55 0 276 130 0 0 chr1 186520400 186520446 -95673218 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 197 283 123 57 chr1 186520448 186520554 -95673110 - L3 LINE CR1 -1445 132 20 * 778 235 25 0 chr1 186520465 186520627 -95673037 + MER5A DNA MER1_type 24 189 0 265 295 23 75 chr1 186520644 186520817 -95672847 - MLT1H LTR MaLR -257 292 129 321 275 117 0 chr1 186520905 186521025 -95672639 - MIR SINE MIR -56 206 73 21 57 0 0 chr1 186521658 186521693 -95671971 + AT_rich Low_complexity Low_complexity 1 35 0 2233 115 3 6 chr1 186523130 186523443 -95670221 - AluSx SINE Alu 0 312 1 248 239 82 69 chr1 186524759 186524918 -95668746 - LTR16C LTR ERVL -5 486 292 527 241 232 0 chr1 186525583 186525790 -95667874 - MIR SINE MIR 0 262 8 406 280 59 0 chr1 186527186 186527304 -95666360 + MIR SINE MIR 5 129 -133 9149 44 6 1 chr1 186527311 186529170 -95664494 - L1PA5 LINE L1 -1 6153 4305 818 67 9 0 chr1 186529164 186529269 -95664395 + L1P LINE L1 3712 3817 -2329 4235 33 2 0 chr1 186529375 186529865 -95663799 + L1P LINE L1 3792 4282 -1864 963 273 34 79 chr1 186529865 186530360 -95663304 + MLT1J LTR MaLR 39 511 0 788 183 72 29 chr1 186530527 186530735 -95662929 - L1MB1 LINE L1 -183 6006 5790 256 206 29 15 chr1 186530747 186530815 -95662849 + (TA)n Simple_repeat Simple_repeat 2 70 0 250 247 22 0 chr1 186530815 186530904 -95662760 - L1MC4 LINE L1 -1339 6703 6613 36 53 0 0 chr1 186530904 186530961 -95662703 + AT_rich Low_complexity Low_complexity 1 57 0 5710 164 26 31 chr1 186530961 186533125 -95660539 - L1PB3 LINE L1 -12 6142 3997 4695 178 24 25 chr1 186533110 186534496 -95659168 - L1MB1 LINE L1 -531 5781 4382 * 198 326 22 58 chr1 186534806 186534944 -95658720 + MER5B DNA MER1_type 21 153 -25 1682 190 60 23 chr1 186535225 186535577 -95658087 + MLT1A1 LTR MaLR 1 365 0 616 79 0 0 chr1 186536003 186536079 -95657585 + U6 snRNA snRNA 1 76 -31 332 341 40 57 chr1 186536224 186536400 -95657264 - MER5A DNA MER1_type 0 189 17 215 248 57 86 chr1 186536681 186536786 -95656878 + MIR SINE MIR 132 233 -29 1096 251 61 16 chr1 186536792 186537116 -95656548 + Tigger7 DNA MER2_type 1 2491 0 825 193 50 59 chr1 186537235 186537473 -95656191 - L1M4c LINE L1 -5372 1274 1039 250 299 75 42 chr1 186537691 186537905 -95655759 - L1M4c LINE L1 -6308 234 14 306 73 0 0 chr1 186538064 186538105 -95655559 + (T)n Simple_repeat Simple_repeat 1 41 0 252 284 29 78 chr1 186538105 186538207 -95655457 - MIR SINE MIR -74 134 38 273 325 90 39 chr1 186539595 186539829 -95653835 + L1ME4a LINE L1 5320 5565 -556 609 304 42 18 chr1 186539951 186540333 -95653331 + L1ME4a LINE L1 5728 6118 -3 474 232 20 20 chr1 186540649 186540748 -95652916 + L2 LINE L2 3154 3252 -20 441 322 28 7 chr1 186540884 186541027 -95652637 + MIR SINE MIR 3 148 -114 560 245 143 78 chr1 186541034 186541523 -95652141 + MLT1F LTR MaLR 10 530 -12 211 253 55 55 chr1 186541573 186541664 -95652000 - MIR SINE MIR -65 197 107 794 182 0 0 chr1 186541709 186541881 -95651783 + AluJb SINE Alu 163 334 0 1706 64 18 114 chr1 186543088 186543369 -95650295 + AluSq SINE Alu 45 298 -15 501 203 116 112 chr1 186544748 186544999 -95648665 + MIR SINE MIR 2 253 -9 238 207 17 0 chr1 186545001 186545059 -95648605 + (CAT)n Simple_repeat Simple_repeat 1 59 0 801 231 91 15 chr1 186545713 186545912 -95647752 - MIR SINE MIR -13 249 36 2136 107 0 0 chr1 186545938 186546218 -95647446 + AluSg SINE Alu 1 280 -30 823 243 29 33 chr1 186546587 186546797 -95646867 + MER58A DNA MER1_type 1 209 -15 267 345 40 58 chr1 186546845 186547019 -95646645 - MIR SINE MIR -72 190 20 298 239 37 37 chr1 186547208 186547317 -95646347 + AluSx SINE Alu 3 111 -192 839 207 35 6 chr1 186547497 186547671 -95645993 + AluSx SINE Alu 117 295 -14 483 306 109 14 chr1 186547751 186548035 -95645629 + L1MCc LINE L1 98 408 -6015 2085 216 86 12 chr1 186548273 186548787 -95644877 + L1MD3 LINE L1 7430 7981 -14 1357 272 141 27 chr1 186549676 186549858 -95643806 - MLT1L LTR MaLR 0 615 455 1858 132 44 20 chr1 186549858 186550153 -95643511 - AluSg SINE Alu -8 302 1 1357 272 141 27 chr1 186550153 186550522 -95643142 - MLT1L LTR MaLR -160 455 1 240 339 58 58 chr1 186550954 186551143 -95642521 + L2 LINE L2 2896 3084 -188 2590 136 8 2 chr1 186551198 186551594 -95642070 - HSMAR2 DNA Mariner -1 1301 904 1084 132 0 35 chr1 186551595 186551769 -95641895 - AluJb SINE Alu -1 311 144 6190 120 0 16 chr1 186551778 186552696 -95640968 - HSMAR2 DNA Mariner -398 904 2 366 343 27 81 chr1 186552939 186553467 -95640197 - L2 LINE L2 -236 3036 2539 1932 209 146 34 chr1 186553468 186553976 -95639688 - MLT1E2 LTR MaLR 0 626 62 273 271 155 34 chr1 186554202 186554352 -95639312 + MIR3 SINE MIR 4 167 -41 797 241 69 10 chr1 186555092 186555295 -95638369 - MIR SINE MIR -5 257 43 829 157 0 0 chr1 186555296 186555411 -95638253 + FLAM_C SINE Alu 1 115 -18 23 33 0 0 chr1 186555413 186555443 -95638221 + AT_rich Low_complexity Low_complexity 1 30 0 191 293 0 0 chr1 186555443 186555484 -95638180 - MIR SINE MIR -208 54 14 360 339 146 27 chr1 186556163 186556676 -95636988 - L2 LINE L2 -88 3184 2615 1341 294 51 40 chr1 186556964 186557367 -95636297 + L2 LINE L2 1750 2164 -1150 2682 26 0 3 chr1 186557367 186557672 -95635992 - AluY SINE Alu -7 304 1 1341 294 51 40 chr1 186557672 186557895 -95635769 + L2 LINE L2 2164 2383 -931 1629 227 17 53 chr1 186557946 186558413 -95635251 + L1MEc LINE L1 423 872 -5524 923 235 66 12 chr1 186558431 186558750 -95634914 + L1MEc LINE L1 1023 1358 -5038 812 208 16 148 chr1 186558739 186558872 -95634792 + L1ME1 LINE L1 5782 5931 -235 * 1354 169 123 4 chr1 186558872 186558994 -95634670 + AluJo SINE Alu 1 107 -205 225 0 0 0 chr1 186558994 186559019 -95634645 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1354 169 123 4 chr1 186559019 186559156 -95634508 + AluJo SINE Alu 107 291 -21 812 208 16 148 chr1 186559156 186559455 -95634209 + L1ME1 LINE L1 5931 6157 -9 2546 264 32 48 chr1 186559915 186561582 -95632082 - L1M1 LINE L1 -4289 2817 1 1393 253 69 12 chr1 186561590 186561998 -95631666 + L1ME3A LINE L1 5705 6135 -35 763 256 109 23 chr1 186562890 186563156 -95630508 + L3b LINE CR1 1221 1509 -74 1704 214 28 165 chr1 186564619 186565508 -95628156 - LTR41 LTR ERVL -6 767 1 195 286 0 0 chr1 186565627 186565669 -95627995 - MIR SINE MIR -173 89 48 240 210 32 48 chr1 186566140 186566202 -95627462 - MIR SINE MIR -125 83 23 407 269 228 0 chr1 186566495 186566640 -95627024 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr1 186566678 186566728 -95626936 + (A)n Simple_repeat Simple_repeat 1 50 0 17224 174 118 28 chr1 186567484 186568140 -95625524 - L1P LINE L1 -2316 3830 3234 252 0 0 0 chr1 186568140 186568168 -95625496 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 7870 30 0 5 chr1 186568168 186569132 -95624532 - L1PA3 LINE L1 -13 6142 5180 17224 174 118 28 chr1 186569132 186570093 -95623571 - L1P LINE L1 -2912 3234 2361 274 243 14 0 chr1 186570093 186570163 -95623501 - MER103 DNA DNA -10 156 86 13592 47 10 2 chr1 186570170 186572568 -95621096 - L1PA5 LINE L1 -6 6148 3738 17224 174 118 28 chr1 186572568 186574383 -95619281 - L1P LINE L1 -3790 2356 3 21 0 0 0 chr1 186575481 186575502 -95618162 + AT_rich Low_complexity Low_complexity 1 21 0 2136 212 8 3 chr1 186575833 186576324 -95617340 - MER89 LTR ERV1 0 559 3 957 163 0 0 chr1 186576357 186576510 -95617154 - AluSc SINE Alu 0 309 157 264 159 0 0 chr1 186576510 186576554 -95617110 + Alu SINE Alu 249 292 -10 373 275 53 24 chr1 186576598 186576767 -95616897 + HERVL LTR ERVL 3537 3672 -1982 499 290 45 34 chr1 186576796 186576972 -95616692 + HERVL LTR ERVL 3777 3954 -1810 862 261 110 14 chr1 186577010 186577358 -95616306 + HERVL LTR ERVL 3988 4371 -1283 1320 334 21 17 chr1 186577666 186578244 -95615420 + HERVL LTR ERVL 4761 5340 -424 2591 208 49 82 chr1 186578657 186579426 -95614238 + MER21B LTR ERV1 13 756 -107 315 286 195 27 chr1 186579626 186579811 -95613853 + LTR33 LTR ERVL 304 519 -2 2676 211 82 2 chr1 186579911 186580433 -95613231 + MLT1F1 LTR MaLR 1 564 -3 599 246 86 40 chr1 186580461 186580636 -95613028 - MIR SINE MIR 0 262 80 3091 231 53 1 chr1 186580644 186581323 -95612341 + HsTC2c DNA Tc2 15 728 -1 296 338 0 0 chr1 186581324 186581392 -95612272 - MIR SINE MIR -186 76 9 793 126 0 0 chr1 186581499 186581618 -95612046 + L1MB2 LINE L1 6051 6169 -2 23 54 0 0 chr1 186581618 186581655 -95612009 + AT_rich Low_complexity Low_complexity 1 37 0 1626 191 7 11 chr1 186581655 186581938 -95611726 + AluJb SINE Alu 1 282 -30 233 75 25 0 chr1 186581941 186581981 -95611683 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 497 165 78 0 chr1 186582092 186582195 -95611469 + L1ME2 LINE L1 6044 6154 -10 1550 178 4 32 chr1 186582205 186582514 -95611150 - AluJb SINE Alu 0 309 9 236 326 0 21 chr1 186582605 186582700 -95610964 - L3 LINE CR1 -805 772 680 277 307 109 10 chr1 186582700 186582801 -95610863 - L3 LINE CR1 -1147 430 320 248 306 256 6 chr1 186583836 186583996 -95609668 - L2 LINE L2 0 3313 3114 263 211 11 0 chr1 186584158 186584248 -95609416 + GA-rich Low_complexity Low_complexity 1 91 0 316 245 161 42 chr1 186585307 186585499 -95608165 - L1ME4a LINE L1 -5 6116 5902 1415 260 117 40 chr1 186585793 186586339 -95607325 + MLT2E LTR ERVL 36 623 -5 466 333 47 5 chr1 186586755 186586947 -95606717 + ERVL LTR ERVL 464 663 -5101 941 296 58 14 chr1 186586973 186587334 -95606330 + ERVL LTR ERVL 764 1140 -4624 27 0 0 0 chr1 186587401 186587428 -95606236 + AT_rich Low_complexity Low_complexity 1 27 0 436 257 115 40 chr1 186587458 186587684 -95605980 - L1M4 LINE L1 -3375 2771 2529 2961 260 116 27 chr1 186587737 186588360 -95605304 + L1ME LINE L1 3357 3923 -2223 2028 133 0 11 chr1 186588360 186588668 -95604996 - AluSg SINE Alu 0 305 1 2961 260 116 27 chr1 186588668 186589278 -95604386 + L1ME LINE L1 3923 4743 -1403 195 42 0 0 chr1 186589278 186589302 -95604362 + (GA)n Simple_repeat Simple_repeat 2 25 0 2961 260 116 27 chr1 186589302 186589526 -95604138 + L1ME LINE L1 4743 4946 -1200 355 325 53 0 chr1 186589770 186589921 -95603743 - MLT1I LTR MaLR -238 171 13 833 265 136 28 chr1 186589948 186590457 -95603207 - HAL1 LINE L1 -856 1651 1088 369 280 63 28 chr1 186590462 186590605 -95603059 - MLT1L LTR MaLR 0 615 468 937 286 80 19 chr1 186590657 186591015 -95602649 - MLT1L LTR MaLR -229 386 12 395 263 135 42 chr1 186591032 186591321 -95602343 - HAL1 LINE L1 -1420 1087 772 685 319 29 22 chr1 186591578 186591952 -95601712 + MER115 DNA AcHobo 31 455 -238 426 286 149 0 chr1 186592109 186592270 -95601394 - MER5A DNA MER1_type -3 186 2 180 77 0 0 chr1 186592329 186592355 -95601309 + (TC)n Simple_repeat Simple_repeat 1 26 0 274 283 50 0 chr1 186592383 186592482 -95601182 - HAL1 LINE L1 -2382 125 22 182 286 9 86 chr1 186592690 186592795 -95600869 + MIR SINE MIR 116 212 -50 270 307 45 11 chr1 186592926 186593014 -95600650 + MIR SINE MIR 20 110 -152 420 306 95 43 chr1 186593049 186593396 -95600268 + L1ME LINE L1 5267 5631 -490 4057 167 103 26 chr1 186593996 186594792 -95598872 - MER21B LTR ERV1 -1 862 6 285 377 89 5 chr1 186595297 186595488 -95598176 - MIR SINE MIR -37 225 19 2066 196 16 3 chr1 186596031 186596414 -95597250 - MLT1B LTR MaLR 0 390 3 349 278 10 21 chr1 186596667 186596764 -95596900 + MER94 DNA DNA 39 134 0 268 291 17 2 chr1 186597097 186597175 -95596489 + MER20 DNA MER1_type 9 75 -144 388 289 88 46 chr1 186597409 186597603 -95596061 + MIR SINE MIR 11 212 -50 297 289 232 24 chr1 186599956 186600441 -95593223 - L2 LINE L2 -252 3061 2474 192 111 0 0 chr1 186601008 186601044 -95592620 + (TA)n Simple_repeat Simple_repeat 1 36 0 935 295 39 44 chr1 186601746 186602153 -95591511 - MLT1I LTR MaLR -4 405 1 330 26 0 0 chr1 186603069 186603108 -95590556 + (TG)n Simple_repeat Simple_repeat 1 39 0 326 347 111 5 chr1 186604026 186604225 -95589439 - MIR SINE MIR -41 221 2 249 33 0 0 chr1 186605081 186605111 -95588553 + (TG)n Simple_repeat Simple_repeat 2 31 0 2233 105 3 0 chr1 186605470 186605766 -95587898 + AluSp SINE Alu 1 297 -16 1238 247 48 37 chr1 186606937 186607370 -95586294 + MLT1J1 LTR MaLR 9 446 0 320 376 82 42 chr1 186608021 186608351 -95585313 + L2 LINE L2 2930 3272 0 929 252 41 32 chr1 186609487 186609733 -95583931 - MIR SINE MIR 0 262 15 398 228 0 0 chr1 186610486 186610565 -95583099 + MER116 DNA Mariner 2 80 0 1236 287 83 7 chr1 186610969 186611380 -95582284 - L2 LINE L2 -1 3312 2871 2199 120 3 0 chr1 186611592 186611901 -95581763 + AluSx SINE Alu 1 310 -2 439 292 56 28 chr1 186612905 186613083 -95580581 + MER5A DNA MER1_type 7 189 0 320 282 120 0 chr1 186613998 186614115 -95579549 + MER112 DNA MER1_type 3 133 -127 190 362 32 90 chr1 186614447 186614635 -95579029 + L2 LINE L2 3000 3176 -96 484 237 188 16 chr1 186614836 186615022 -95578642 + MIR SINE MIR 45 262 0 1082 182 75 69 chr1 186615249 186615323 -95578341 + MER33 DNA MER1_type 1 73 -2512 2280 89 0 0 chr1 186615323 186615615 -95578049 + AluY SINE Alu 8 299 -12 1082 182 75 69 chr1 186615615 186615858 -95577806 + MER33 DNA MER1_type 73 320 -4 2305 92 0 3 chr1 186616871 186617164 -95576500 - AluSp SINE Alu -19 294 3 228 258 32 0 chr1 186617540 186617602 -95576062 + L2 LINE L2 3209 3272 0 700 291 39 9 chr1 186619114 186619344 -95574320 + MIR SINE MIR 8 244 -18 958 214 114 5 chr1 186619499 186619700 -95573964 - MER58A DNA MER1_type 0 224 2 189 0 0 0 chr1 186620131 186620152 -95573512 + (CA)n Simple_repeat Simple_repeat 2 22 0 192 326 73 86 chr1 186620437 186620936 -95572728 + L2 LINE L2 2709 3186 -86 812 237 31 58 chr1 186621169 186621324 -95572340 - MER58A DNA MER1_type -2202 218 69 903 226 69 0 chr1 186621324 186621528 -95572136 - MER20 DNA MER1_type -1 218 1 812 237 31 58 chr1 186621528 186621596 -95572068 - MER58A DNA MER1_type -2351 69 1 840 268 169 71 chr1 186623318 186624004 -95569660 - MER20B DNA MER1_type -30 753 1 1182 201 48 0 chr1 186625507 186625716 -95567948 + MER20 DNA MER1_type 1 219 0 192 77 0 0 chr1 186627370 186627396 -95566268 + (TTA)n Simple_repeat Simple_repeat 3 28 0 503 243 58 40 chr1 186627397 186627570 -95566094 + MER5B DNA MER1_type 1 176 -2 909 225 6 6 chr1 186627677 186627855 -95565809 + MER5B DNA MER1_type 1 178 0 852 229 11 17 chr1 186627863 186628042 -95565622 - MER5B DNA MER1_type 0 178 1 2181 115 51 78 chr1 186628309 186628683 -95564981 + THE1B LTR MaLR 1 364 0 12033 99 25 0 chr1 186628683 186630221 -95563443 + THE1B-int LTR MaLR 1 1576 -4 2178 140 53 34 chr1 186630223 186630580 -95563084 + THE1B LTR MaLR 1 364 0 2856 162 5 0 chr1 186630828 186631254 -95562410 - MSTA LTR MaLR 0 428 1 591 137 0 0 chr1 186631624 186631719 -95561945 - MSTA LTR MaLR -329 99 5 * 628 126 29 0 chr1 186631712 186631815 -95561849 - MSTA LTR MaLR -322 106 1 879 212 88 55 chr1 186631957 186632231 -95561433 - MLT1L LTR MaLR -332 283 1 2131 129 3 0 chr1 186632380 186632675 -95560989 + AluSp SINE Alu 1 296 -17 2588 106 3 3 chr1 186632884 186633241 -95560423 + THE1B LTR MaLR 1 357 -7 9918 109 35 1 chr1 186633247 186634607 -95559057 + THE1B-int LTR MaLR 1 1406 -174 44265 46 2 1 chr1 186634615 186640783 -95552881 + L1PA3 LINE L1 8 6155 0 1518 63 5 0 chr1 186640774 186640965 -95552699 + THE1B-int LTR MaLR 1389 1580 0 * 2715 119 8 0 chr1 186640965 186641326 -95552338 + THE1B LTR MaLR 1 364 0 25 51 0 0 chr1 186641493 186641532 -95552132 + AT_rich Low_complexity Low_complexity 1 39 0 1030 302 18 12 chr1 186641641 186641969 -95551695 + L1M3a LINE L1 1532 1861 -5625 5178 156 28 35 chr1 186642232 186643208 -95550456 + LTR5 LTR ERVK 1 969 0 246 313 25 0 chr1 186643288 186643368 -95550296 + L1M3a LINE L1 1904 1985 -5501 1822 265 24 7 chr1 186643530 186644081 -95549583 + L1M3a LINE L1 1900 2459 -5106 * 7298 182 30 9 chr1 186644078 186645833 -95547831 + L1MA6 LINE L1 1239 3028 -4065 2068 147 3 0 chr1 186645834 186646141 -95547523 + AluSx SINE Alu 1 308 -4 15298 169 35 20 chr1 186646166 186646735 -95546929 + L1MA6 LINE L1 3295 3854 -3865 255 31 0 0 chr1 186646735 186646767 -95546897 + (TA)n Simple_repeat Simple_repeat 2 33 0 15298 169 35 20 chr1 186646767 186648416 -95545248 + L1MA6 LINE L1 3854 5477 -2242 1375 147 60 5 chr1 186648416 186648634 -95545030 + MER30 DNA MER1_type 1 230 0 15298 169 35 20 chr1 186648634 186650759 -95542905 + L1MA6 LINE L1 5477 7719 0 1816 168 26 26 chr1 186650784 186651136 -95542528 + Tigger1 DNA MER2_type 7 358 -2060 11041 134 22 13 chr1 186651140 186652889 -95540775 + Tigger1 DNA MER2_type 495 2258 -160 36620 96 13 18 chr1 186652889 186658083 -95535581 - L1PA6 LINE L1 -14 6140 992 2286 81 3 7 chr1 186658083 186658381 -95535283 - AluY SINE Alu -14 297 1 36620 96 13 18 chr1 186658381 186659356 -95534308 - L1PA6 LINE L1 -5162 992 13 380 193 36 0 chr1 186659789 186659872 -95533792 - HsTC2 DNA Tc2 -1812 86 1 464 271 165 32 chr1 186659889 186660107 -95533557 - MIR SINE MIR -14 248 2 1940 205 89 59 chr1 186660209 186660950 -95532714 + L1MC5 LINE L1 7152 7914 -47 805 206 100 0 chr1 186661594 186661764 -95531900 - MER20 DNA MER1_type 0 219 33 1493 252 91 16 chr1 186661783 186662236 -95531428 - MLT1J LTR MaLR -24 487 1 343 339 131 0 chr1 186662560 186662781 -95530883 - MIR SINE MIR 0 262 13 858 153 0 29 chr1 186662923 186663060 -95530604 - FLAM_C SINE Alu 0 133 1 388 330 87 17 chr1 186663077 186663250 -95530414 + MIR SINE MIR 1 185 -77 435 333 4 2 chr1 186664628 186665032 -95528632 + (CA)n Simple_repeat Simple_repeat 1 404 0 1017 150 0 0 chr1 186665589 186665736 -95527928 + (TTC)n Simple_repeat Simple_repeat 1 327 0 1017 150 0 0 chr1 186665736 186665916 -95527748 + (TTC)n Simple_repeat Simple_repeat 1 180 0 205 265 0 0 chr1 186668121 186668170 -95525494 - MIR SINE MIR -8 254 206 218 269 278 13 chr1 186668271 186668498 -95525166 - L2 LINE L2 -1 3271 2985 40 0 0 0 chr1 186670647 186670687 -95522977 + AT_rich Low_complexity Low_complexity 1 40 0 371 190 0 25 chr1 186670747 186670826 -95522838 - MER103 DNA DNA -47 119 43 216 0 0 0 chr1 186671277 186671301 -95522363 + (CA)n Simple_repeat Simple_repeat 1 24 0 244 293 50 0 chr1 186671409 186671508 -95522156 + L3b LINE CR1 1254 1357 -226 375 314 23 41 chr1 186671648 186671820 -95521844 - MIR3 SINE MIR -6 202 34 241 383 12 48 chr1 186671898 186672065 -95521599 - L2 LINE L2 -221 3051 2891 286 260 14 0 chr1 186673369 186673442 -95520222 + GA-rich Low_complexity Low_complexity 3 76 0 293 299 173 16 chr1 186673941 186674068 -95519596 + MIR3 SINE MIR 4 150 -58 408 260 136 38 chr1 186674747 186675028 -95518636 + MLT1J LTR MaLR 7 322 -124 2175 113 0 13 chr1 186675028 186675329 -95518335 + AluSx SINE Alu 3 299 -13 408 260 136 38 chr1 186675329 186675468 -95518196 + MLT1J LTR MaLR 322 446 0 485 247 128 40 chr1 186675747 186675974 -95517690 + MLT1J LTR MaLR 183 429 -82 191 258 106 15 chr1 186676810 186676876 -95516788 - L2 LINE L2 -4 3309 3238 744 269 101 35 chr1 186676975 186677291 -95516373 + MLT1J2 LTR MaLR 113 449 -1 326 106 0 0 chr1 186677909 186677956 -95515708 - U5 snRNA snRNA -69 47 1 303 161 113 0 chr1 186677978 186678040 -95515624 + MER112 DNA MER1_type 83 151 -109 1981 146 6 13 chr1 186678283 186678647 -95515017 - AluSq SINE Alu 0 362 1 220 182 0 76 chr1 186678647 186678663 -95515001 + T-rich Low_complexity Low_complexity 1 180 0 198 265 191 15 chr1 186678718 186678786 -95514878 - MIR SINE MIR -89 119 40 200 111 28 0 chr1 186678928 186678964 -95514700 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1117 160 70 0 chr1 186679030 186679243 -95514421 - L1MB3 LINE L1 -4 6179 5952 792 200 0 14 chr1 186680361 186680506 -95513158 + FLAM_C SINE Alu 1 143 0 244 278 68 85 chr1 186680512 186680688 -95512976 + MIR SINE MIR 34 206 -56 2158 132 3 3 chr1 186680701 186681012 -95512652 + AluSx SINE Alu 1 311 -1 333 0 0 0 chr1 186681068 186681105 -95512559 + (CA)n Simple_repeat Simple_repeat 1 37 0 268 330 144 0 chr1 186681842 186681960 -95511704 + L2 LINE L2 3137 3271 -1 484 253 5 26 chr1 186682174 186682331 -95511333 - MER5B DNA MER1_type -21 168 14 231 330 80 18 chr1 186682989 186683101 -95510563 - L2 LINE L2 -3 3269 3151 839 281 35 81 chr1 186683151 186683586 -95510078 + L2 LINE L2 2805 3219 -94 1316 207 41 7 chr1 186683599 186683894 -95509770 + MLT1D LTR MaLR 201 505 0 519 288 76 10 chr1 186683899 186684097 -95509567 - L3 LINE CR1 -218 1359 1149 392 295 23 31 chr1 186684302 186684431 -95509233 + MIR SINE MIR 13 140 -122 303 342 168 20 chr1 186684528 186684641 -95509023 - L3 LINE CR1 -559 1018 923 273 29 0 0 chr1 186684641 186684675 -95508989 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 303 342 168 20 chr1 186684675 186684859 -95508805 - L3 LINE CR1 -654 923 677 369 279 9 61 chr1 186685994 186686217 -95507447 + MIR SINE MIR 8 262 0 183 239 0 0 chr1 186686688 186686734 -95506930 + (TA)n Simple_repeat Simple_repeat 1 46 0 674 176 151 13 chr1 186688169 186688328 -95505336 - MER5A DNA MER1_type 0 189 9 1680 159 16 48 chr1 186688878 186689192 -95504472 + AluJb SINE Alu 1 304 -8 238 351 70 80 chr1 186689615 186689914 -95503750 - L2 LINE L2 0 3272 2977 268 225 11 11 chr1 186690006 186690095 -95503569 + GA-rich Low_complexity Low_complexity 1 89 0 2117 102 3 0 chr1 186690916 186691199 -95502465 + AluSc SINE Alu 1 284 -25 281 239 15 0 chr1 186691229 186691296 -95502368 + CT-rich Low_complexity Low_complexity 2 69 0 301 311 11 11 chr1 186692271 186692361 -95501303 - MIR SINE MIR -85 177 88 651 163 0 0 chr1 186692377 186692500 -95501164 + CT-rich Low_complexity Low_complexity 3 125 0 601 261 240 36 chr1 186692505 186693132 -95500532 - L2 LINE L2 -34 3279 2507 339 275 22 0 chr1 186693375 186693466 -95500198 + MIR3 SINE MIR 106 198 -10 706 142 59 107 chr1 186693642 186693665 -95499999 - MER3 DNA MER1_type -1 161 138 3453 180 21 2 chr1 186693665 186694281 -95499383 + L1MB5 LINE L1 5546 6173 -1 706 142 59 107 chr1 186694281 186694426 -95499238 - MER3 DNA MER1_type -24 138 1 215 240 0 20 chr1 186695617 186695667 -95497997 + CT-rich Low_complexity Low_complexity 4 52 0 2107 125 3 0 chr1 186695698 186695993 -95497671 - AluSx SINE Alu -16 296 1 337 280 32 0 chr1 186696546 186696639 -95497025 - MER103 DNA DNA -7 159 64 595 297 91 18 chr1 186696769 186697055 -95496609 + LTR16A1 LTR ERVL 146 452 -5 234 194 97 42 chr1 186697105 186697177 -95496487 - L2 LINE L2 0 3272 3197 1663 61 0 23 chr1 186698139 186698353 -95495311 + AluY SINE Alu 103 311 0 1317 215 0 4 chr1 186699026 186699272 -95494392 - MLT1A1 LTR MaLR -120 245 1 491 278 34 57 chr1 186699575 186699751 -95493913 + MIR SINE MIR 37 208 -54 1590 128 12 28 chr1 186700141 186700425 -95493239 + AluSx SINE Alu 38 317 0 385 307 98 7 chr1 186700457 186700610 -95493054 - L1MC4 LINE L1 -76 7966 7800 5204 220 68 81 chr1 186700616 186701297 -95492367 - L1MC4a LINE L1 -109 7699 7011 216 67 0 0 chr1 186701297 186701327 -95492337 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5204 220 68 81 chr1 186701327 186702428 -95491236 - L1MC4a LINE L1 -797 7011 5940 561 261 22 22 chr1 186703618 186703756 -95489908 - L3 LINE CR1 -7 1570 1433 425 322 30 80 chr1 186703768 186704069 -95489595 + L2 LINE L2 2987 3272 0 290 308 96 0 chr1 186704078 186704182 -95489482 - L3 LINE CR1 -150 1427 1314 182 327 73 20 chr1 186704269 186704419 -95489245 - L3 LINE CR1 -297 1280 1123 305 325 5 101 chr1 186705294 186705482 -95488182 + L2 LINE L2 3080 3249 -23 225 276 143 32 chr1 186705578 186705720 -95487944 - MER5B DNA MER1_type -28 161 7 236 368 0 0 chr1 186705789 186705876 -95487788 + L3 LINE CR1 382 468 -1109 795 261 110 24 chr1 186705917 186706208 -95487456 - MLT1I LTR MaLR -3 406 91 712 248 0 0 chr1 186706926 186707083 -95486581 + L1MC4 LINE L1 6894 7050 -992 2381 261 47 14 chr1 186707140 186707891 -95485773 + L2 LINE L2 1927 3074 -239 442 200 0 0 chr1 186707896 186707971 -95485693 + FLAM_A SINE Alu 1 75 -57 218 351 26 18 chr1 186708357 186708471 -95485193 - L3b LINE CR1 -346 1237 1123 200 326 26 56 chr1 186709122 186709279 -95484385 + MIR SINE MIR 8 164 -62 235 250 136 23 chr1 186709339 186709427 -95484237 - L2 LINE L2 0 3313 3216 204 135 0 0 chr1 186709519 186709556 -95484108 + (TA)n Simple_repeat Simple_repeat 1 37 0 7446 53 0 0 chr1 186709557 186710632 -95483032 - L1PA6 LINE L1 -15 6139 5067 355 257 257 0 chr1 186710641 186710754 -95482910 - L2 LINE L2 -234 3079 2938 749 251 77 16 chr1 186711408 186711764 -95481900 + MLT1C LTR MaLR 1 467 0 665 273 92 18 chr1 186713157 186713384 -95480280 + MIR SINE MIR 19 262 0 437 308 30 20 chr1 186713794 186713992 -95479672 + MIR SINE MIR 2 201 -61 297 287 91 28 chr1 186714249 186714392 -95479272 - MIR SINE MIR -11 251 100 266 304 20 39 chr1 186714503 186714605 -95479059 - MIR SINE MIR -140 122 23 292 273 43 96 chr1 186714637 186714824 -95478840 + MER5B DNA MER1_type 1 177 -1 358 315 19 6 chr1 186715240 186715402 -95478262 - L1ME4a LINE L1 -265 5856 5693 267 133 0 0 chr1 186715418 186715463 -95478201 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 2012 121 0 20 chr1 186715575 186715872 -95477792 + AluSx SINE Alu 1 291 -21 2725 234 113 72 chr1 186716515 186717688 -95475976 - MER69B DNA AcHobo -3 1223 2 310 311 25 43 chr1 186717742 186717903 -95475761 + MIR SINE MIR 59 216 -46 498 273 90 113 chr1 186718017 186718528 -95475136 + L2 LINE L2 2757 3258 -14 2293 113 0 3 chr1 186719202 186719513 -95474151 - AluSx SINE Alu 0 312 3 284 326 96 22 chr1 186720044 186720179 -95473485 + MIR SINE MIR 2 146 -116 571 319 27 5 chr1 186720553 186720738 -95472926 + MER5A DNA MER1_type 1 189 0 285 234 131 37 chr1 186720848 186720955 -95472709 - MIR3 SINE MIR -86 122 6 213 39 0 0 chr1 186721054 186721080 -95472584 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 0 362 246 92 8 chr1 186721430 186721567 -95472097 + MIR3 SINE MIR 3 154 -75 258 278 0 0 chr1 186721678 186721750 -95471914 - MER103 DNA DNA -76 90 19 613 268 21 41 chr1 186721754 186721997 -95471667 - L2 LINE L2 -1 3312 3075 214 322 0 0 chr1 186722709 186722768 -95470896 - MIR SINE MIR -8 254 196 2760 184 21 32 chr1 186722842 186723449 -95470215 + MLT1E3 LTR MaLR 57 618 -6 481 237 46 35 chr1 186723451 186723599 -95470065 - MIR SINE MIR -62 146 4 866 121 15 23 chr1 186723681 186723813 -95469851 + AluSq/x SINE Alu 3 133 -179 317 163 0 0 chr1 186723891 186723940 -95469724 - MER63 DNA MER1_type -35 1027 979 402 211 114 26 chr1 186723941 186724055 -95469609 - MER63 DNA MER1_type -311 751 2 574 256 78 66 chr1 186725751 186725993 -95467671 - MIR SINE MIR -2 260 16 180 368 97 9 chr1 186726907 186727021 -95466643 + MIR3 SINE MIR 44 167 -41 1893 198 90 22 chr1 186727084 186727539 -95466125 + MLT1D LTR MaLR 1 486 -19 2506 115 27 21 chr1 186727676 186728049 -95465615 - THE1C LTR MaLR 0 375 1 315 300 20 20 chr1 186728381 186728481 -95465183 + MIR3 SINE MIR 69 168 -40 195 290 81 0 chr1 186728513 186728575 -95465089 - MIR SINE MIR -70 192 126 209 314 69 39 chr1 186728705 186728807 -95464857 + L2 LINE L2 2932 3036 -236 372 43 0 0 chr1 186729184 186729230 -95464434 + (TG)n Simple_repeat Simple_repeat 2 47 0 1248 290 68 45 chr1 186729841 186730633 -95463031 + L1MEd LINE L1 121 930 -5189 369 229 76 46 chr1 186730671 186730802 -95462862 + L1ME3A LINE L1 3 137 -5982 397 307 70 40 chr1 186731113 186731413 -95462251 + L1ME3A LINE L1 581 889 -5230 477 260 147 20 chr1 186731427 186731862 -95461802 + L1ME3A LINE L1 4962 5460 -689 1609 137 11 36 chr1 186731868 186732146 -95461518 + THE1B LTR MaLR 94 364 0 11568 91 24 0 chr1 186732148 186733689 -95459975 + THE1B-int LTR MaLR 3 1580 0 2136 139 28 19 chr1 186733689 186734048 -95459616 + THE1B LTR MaLR 1 362 -2 253 276 53 0 chr1 186734054 186734130 -95459534 + L1ME3A LINE L1 5540 5619 -534 229 200 9 152 chr1 186734143 186734248 -95459416 + MER112 DNA MER1_type 5 94 -166 204 40 0 0 chr1 186734336 186734361 -95459303 + (TG)n Simple_repeat Simple_repeat 1 25 0 747 261 51 12 chr1 186734561 186734818 -95458846 + L1ME3A LINE L1 5648 5914 -239 194 274 137 0 chr1 186735047 186735120 -95458544 + L2 LINE L2 3157 3239 -33 1029 113 0 0 chr1 186735125 186735284 -95458380 + (GGAA)n Simple_repeat Simple_repeat 4 162 0 308 301 177 11 chr1 186736558 186736744 -95456920 - MIR SINE MIR -44 218 2 198 282 57 97 chr1 186736859 186736983 -95456681 - L2 LINE L2 -10 3262 3144 326 282 81 29 chr1 186737036 186737097 -95456567 - L2 LINE L2 -226 3046 2990 234 0 0 0 chr1 186737097 186737123 -95456541 + (TG)n Simple_repeat Simple_repeat 2 27 0 326 282 81 29 chr1 186737123 186737270 -95456394 - L2 LINE L2 -282 2990 2827 2711 219 70 17 chr1 186737803 186738556 -95455108 + Charlie1 DNA MER1_type 1451 2243 -518 4277 145 100 92 chr1 186738556 186739106 -95454558 - L1MC3 LINE L1 -41 7744 7109 302 206 41 41 chr1 186739106 186739179 -95454485 - MLT1F1 LTR MaLR -450 117 45 4277 145 100 92 chr1 186739179 186739578 -95454086 - L1MC3 LINE L1 -676 7109 6715 1430 210 130 34 chr1 186739586 186740110 -95453554 + Charlie1 DNA MER1_type 2188 2761 0 405 310 88 88 chr1 186740112 186740512 -95453152 + L2 LINE L2 2873 3272 0 360 210 0 0 chr1 186740650 186740712 -95452952 - L2 LINE L2 -5 3308 3247 2188 141 0 0 chr1 186741277 186741590 -95452074 + AluSq SINE Alu 1 313 0 584 185 48 20 chr1 186741664 186741810 -95451854 + Charlie5 DNA MER1_type 2469 2618 0 335 292 26 9 chr1 186742502 186742615 -95451049 - MIR SINE MIR -123 139 25 437 118 0 0 chr1 186742702 186742778 -95450886 - L1MA4A LINE L1 -3 6300 6225 889 146 6 30 chr1 186742778 186742943 -95450721 + L1MA4A LINE L1 6003 6163 -140 254 275 117 8 chr1 186743662 186743782 -95449882 + L2 LINE L2 3179 3311 -2 225 274 57 57 chr1 186743950 186744074 -95449590 + L2 LINE L2 2935 3058 -214 258 309 25 0 chr1 186745762 186745843 -95447821 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 934 231 51 83 chr1 186746254 186746341 -95447323 - MLT1J LTR MaLR -1 510 422 1847 185 46 0 chr1 186746341 186746670 -95446994 + MER2 DNA MER2_type 1 344 0 934 231 51 83 chr1 186746670 186747018 -95446646 - MLT1J LTR MaLR -89 422 1 280 393 0 0 chr1 186747197 186747332 -95446332 + L2 LINE L2 2925 3059 -213 180 313 0 21 chr1 186747434 186747482 -95446182 + L2 LINE L2 3132 3178 -94 422 286 0 8 chr1 186747582 186747701 -95445963 + MIR SINE MIR 25 142 -66 231 36 0 0 chr1 186747749 186747777 -95445887 + (CA)n Simple_repeat Simple_repeat 2 29 0 258 228 11 65 chr1 186747849 186747941 -95445723 - LTR67 LTR ERVL -14 543 457 382 291 6 86 chr1 186748112 186748287 -95445377 - MLT1K LTR MaLR -412 176 16 314 325 107 32 chr1 186748536 186748816 -95444848 + L2 LINE L2 3011 3311 -2 226 301 97 35 chr1 186749299 186749412 -95444252 - MIR SINE MIR -83 179 60 222 195 0 0 chr1 186749637 186749678 -95443986 + GA-rich Low_complexity Low_complexity 2 42 0 452 269 99 16 chr1 186750223 186750432 -95443232 - MIR SINE MIR -6 256 32 298 244 5 42 chr1 186750506 186750637 -95443027 + MLT1J1 LTR MaLR 311 432 -14 555 216 155 46 chr1 186752117 186752311 -95441353 - MER58C DNA MER1_type 0 215 1 188 183 0 100 chr1 186752602 186752662 -95441002 - MIR SINE MIR -91 171 118 434 209 9 38 chr1 186756799 186756904 -95436760 + MER5A DNA MER1_type 8 109 -80 269 271 119 17 chr1 186757180 186757298 -95436366 + MIR SINE MIR 25 154 -108 2483 48 0 29 chr1 186758387 186758696 -95434968 - AluY SINE Alu -11 300 1 261 232 0 0 chr1 186758830 186758886 -95434778 + MER103 DNA DNA 55 110 -56 4402 194 43 7 chr1 186759018 186759850 -95433814 + MER21B LTR ERV1 1 862 -1 21 0 0 0 chr1 186760726 186760747 -95432917 + AT_rich Low_complexity Low_complexity 1 21 0 261 270 11 11 chr1 186761481 186761570 -95432094 + L2 LINE L2 2978 3066 -206 248 245 121 77 chr1 186761897 186762170 -95431494 + MLT1I LTR MaLR 1 285 -124 959 230 77 12 chr1 186762466 186762849 -95430815 + MLT1J LTR MaLR 1 467 -44 545 240 190 6 chr1 186762853 186763032 -95430632 + L1ME1 LINE L1 5685 5896 -270 224 150 25 0 chr1 186763797 186763837 -95429827 + MIR SINE MIR 58 98 -164 1627 158 109 34 chr1 186763837 186764186 -95429478 + THE1C LTR MaLR 1 375 0 475 213 8 16 chr1 186764186 186764308 -95429356 + MIR SINE MIR 94 214 -48 1835 148 26 16 chr1 186764781 186765084 -95428580 + AluSx SINE Alu 1 306 -6 328 332 69 10 chr1 186765521 186765723 -95427941 + MIR SINE MIR 37 250 -12 335 330 191 5 chr1 186766531 186766740 -95426924 + MIR SINE MIR 2 249 -13 1007 173 44 84 chr1 186767293 186767518 -95426146 + MER8 DNA MER2_type 21 236 -3 1094 193 47 0 chr1 186767681 186767893 -95425771 - MER58A DNA MER1_type -2 222 1 426 306 27 0 chr1 186770569 186770680 -95422984 + MIR SINE MIR 31 144 -64 392 227 28 85 chr1 186770721 186770862 -95422802 - MIR SINE MIR -53 209 77 444 37 0 0 chr1 186771639 186771654 -95422010 + (CA)n Simple_repeat Simple_repeat 1 69 0 444 37 0 0 chr1 186771654 186771708 -95421956 + (CA)n Simple_repeat Simple_repeat 2 55 0 250 326 21 0 chr1 186772592 186772698 -95420966 + MIR SINE MIR 1 110 -98 661 150 30 126 chr1 186772698 186772865 -95420799 + L1MB8 LINE L1 5976 6126 -52 214 267 11 78 chr1 186772873 186772963 -95420701 + MIR SINE MIR 97 180 -82 227 289 87 47 chr1 186773114 186773263 -95420401 - L2 LINE L2 0 3313 3159 226 213 225 25 chr1 186773621 186773701 -95419963 + MIR SINE MIR 2 97 -165 1968 121 48 6 chr1 186773702 186774015 -95419649 + MSTA LTR MaLR 1 326 -102 565 168 0 0 chr1 186774115 186774210 -95419454 + MSTA LTR MaLR 334 428 0 196 353 115 8 chr1 186774242 186774364 -95419300 + MIR SINE MIR 127 261 -1 702 189 136 18 chr1 186775477 186775646 -95418018 - MER5A DNA MER1_type 0 189 1 355 280 55 90 chr1 186776731 186776931 -95416733 - L2 LINE L2 -50 3222 3030 28 0 0 0 chr1 186776949 186776977 -95416687 + AT_rich Low_complexity Low_complexity 1 28 0 1993 140 0 11 chr1 186777095 186777380 -95416284 + AluSx SINE Alu 3 284 -28 276 30 0 0 chr1 186777382 186777415 -95416249 + (CATA)n Simple_repeat Simple_repeat 2 34 0 364 307 0 39 chr1 186777777 186777930 -95415734 - L2 LINE L2 0 3313 3167 653 276 104 4 chr1 186778080 186778348 -95415316 + LTR33A LTR ERVL 226 520 -3 436 223 9 61 chr1 186778894 186779086 -95414578 - HsTC2 DNA Tc2 -1 1897 4 393 304 82 6 chr1 186779300 186779471 -95414193 + MIR3 SINE MIR 16 199 -9 1445 230 14 14 chr1 186779729 186780094 -95413570 + MLT1A1 LTR MaLR 1 365 0 347 299 24 61 chr1 186780504 186780668 -95412996 - MIR3 SINE MIR -31 177 20 243 0 0 0 chr1 186780927 186780954 -95412710 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1464 150 89 21 chr1 186781128 186781408 -95412256 - AluJo SINE Alu -1 311 13 1611 207 7 0 chr1 186783008 186783308 -95410356 + AluJb SINE Alu 1 302 -10 298 298 70 9 chr1 186783338 186783452 -95410212 + L2 LINE L2 2228 2348 -966 482 256 0 16 chr1 186783590 186783715 -95409949 + L2 LINE L2 3191 3313 0 273 339 75 16 chr1 186783746 186783932 -95409732 + L2 LINE L2 2575 2771 -543 24 32 0 0 chr1 186784284 186784315 -95409349 + AT_rich Low_complexity Low_complexity 1 31 0 187 246 33 49 chr1 186784381 186784442 -95409222 + L2 LINE L2 3204 3263 -9 213 65 0 0 chr1 186785243 186785274 -95408390 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr1 186785452 186785477 -95408187 + GC_rich Low_complexity Low_complexity 1 25 0 369 156 240 0 chr1 186786286 186786382 -95407282 + MER53 DNA DNA 24 142 -47 296 198 33 33 chr1 186786566 186786657 -95407007 + MER5B DNA MER1_type 1 91 -87 270 244 193 52 chr1 186786757 186786892 -95406772 + L2 LINE L2 3148 3301 -12 1864 83 31 8 chr1 186787061 186787315 -95406349 - AluY SINE Alu -15 296 37 608 298 63 32 chr1 186788638 186788890 -95404774 + MIR SINE MIR 2 261 -1 369 229 161 47 chr1 186789831 186790023 -95403641 - MER112 DNA MER1_type -6 254 41 180 283 0 33 chr1 186790378 186790438 -95403226 + L2 LINE L2 3251 3308 -5 386 323 104 5 chr1 186791208 186791428 -95402236 - MIR SINE MIR 0 262 21 298 207 49 49 chr1 186791943 186792025 -95401639 - L2 LINE L2 0 3272 3191 903 76 0 34 chr1 186792456 186792575 -95401089 + AluY SINE Alu 28 142 -169 1264 86 0 0 chr1 186792630 186792793 -95400871 + AluY SINE Alu 148 310 -1 1178 165 45 30 chr1 186792799 186793065 -95400599 + L1MD3 LINE L1 7726 7995 0 443 308 186 50 chr1 186793212 186793629 -95400035 + L3 LINE CR1 963 1471 -106 4248 174 56 35 chr1 186793629 186794474 -95399190 + MER21B LTR ERV1 1 862 -1 443 308 186 50 chr1 186794474 186794595 -95399069 + L3 LINE CR1 1471 1574 -3 1149 138 6 0 chr1 186794930 186795104 -95398560 - L1PA16 LINE L1 -9 6157 5983 750 314 167 20 chr1 186795365 186795808 -95397856 - L3 LINE CR1 -430 1147 640 207 360 33 46 chr1 186795974 186796127 -95397537 - L2 LINE L2 -1 3271 3121 236 273 63 97 chr1 186796238 186796647 -95397017 - L3 LINE CR1 -5 1572 1133 264 310 108 16 chr1 186796725 186796854 -95396810 - L3 LINE CR1 -444 1133 993 230 69 0 0 chr1 186796882 186796911 -95396753 + (T)n Simple_repeat Simple_repeat 1 29 0 552 271 43 14 chr1 186797546 186797753 -95395911 - MIR SINE MIR -48 214 2 355 191 64 11 chr1 186797771 186797865 -95395799 - L2 LINE L2 0 3272 3174 192 313 47 0 chr1 186798515 186798579 -95395085 - MIR3 SINE MIR -54 154 98 348 286 117 44 chr1 186798664 186798870 -95394794 + MLT1I LTR MaLR 64 284 -125 3169 58 10 15 chr1 186799679 186800089 -95393575 + L1PA10 LINE L1 5761 6168 0 22 0 0 0 chr1 186800205 186800227 -95393437 + AT_rich Low_complexity Low_complexity 1 22 0 298 315 93 76 chr1 186800419 186800775 -95392889 - L2 LINE L2 -1 3271 2910 2309 114 0 0 chr1 186800914 186801213 -95392451 - AluSx SINE Alu -13 299 1 233 337 30 41 chr1 186801481 186801650 -95392014 + L2 LINE L2 2918 3084 -188 186 323 32 0 chr1 186801738 186801800 -95391864 + MIR SINE MIR 43 106 -102 227 143 0 18 chr1 186802744 186802800 -95390864 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 461 234 90 14 chr1 186802884 186803029 -95390635 - L2 LINE L2 0 3313 3158 23 0 0 0 chr1 186803135 186803158 -95390506 + AT_rich Low_complexity Low_complexity 1 23 0 268 172 47 16 chr1 186804746 186804810 -95388854 + MIR SINE MIR 100 165 -97 203 259 82 59 chr1 186804891 186804976 -95388688 - L2 LINE L2 -56 3257 3171 270 326 74 0 chr1 186805261 186805396 -95388268 + MIR SINE MIR 46 190 -72 2362 84 7 0 chr1 186805522 186805818 -95387846 + AluSq SINE Alu 1 298 -15 185 314 70 0 chr1 186806750 186806836 -95386828 + MIR SINE MIR 41 132 -130 392 288 149 28 chr1 186808649 186808864 -95384800 + MIR SINE MIR 20 260 -2 294 73 0 0 chr1 186810164 186810205 -95383459 + (TG)n Simple_repeat Simple_repeat 1 41 0 3673 165 44 4 chr1 186811180 186811878 -95381786 + L1MB3 LINE L1 5451 6176 -7 32 0 0 0 chr1 186811878 186811910 -95381754 + AT_rich Low_complexity Low_complexity 1 32 0 233 136 91 0 chr1 186811979 186812023 -95381641 + LTR67 LTR ERVL 105 152 -405 * 688 247 59 91 chr1 186811989 186812329 -95381335 + MLT1J LTR MaLR 114 442 -69 2217 269 142 31 chr1 186812433 186813530 -95380134 + L2 LINE L2 1514 2732 -582 386 269 9 9 chr1 186813542 186813650 -95380014 - MIR SINE MIR -107 155 48 635 163 0 6 chr1 186814505 186814752 -95378912 + AluJ SINE Alu 1 297 -15 2456 76 0 3 chr1 186814752 186815056 -95378608 + AluY SINE Alu 1 303 -8 925 262 95 51 chr1 186815830 186816391 -95377273 - L2 LINE L2 0 3313 2718 2575 68 0 0 chr1 186816405 186816731 -95376933 - AluY SINE Alu 0 326 1 2341 175 46 53 chr1 186816839 186817382 -95376282 - L1MB5 LINE L1 -8 6166 5628 370 266 9 18 chr1 186817382 186817491 -95376173 - L2 LINE L2 -611 2703 2596 866 270 154 24 chr1 186817493 186817985 -95375679 - L2 LINE L2 -1234 2080 1525 560 180 16 0 chr1 186818442 186818561 -95375103 + MIR SINE MIR 16 145 -63 316 178 82 14 chr1 186819245 186819267 -95374397 + MER3 DNA MER1_type 1 20 -142 4614 73 16 9 chr1 186819267 186819897 -95373767 + L1PA10 LINE L1 5535 6168 0 316 178 82 14 chr1 186819897 186819947 -95373717 + MER3 DNA MER1_type 20 78 -131 779 247 177 68 chr1 186820780 186821323 -95372341 + MLT1L LTR MaLR 6 607 -8 296 174 0 0 chr1 186821779 186821825 -95371839 - MER3 DNA MER1_type -131 78 33 814 38 0 28 chr1 186821829 186821935 -95371729 - L1PA10 LINE L1 0 6168 6066 393 239 11 0 chr1 186823817 186823909 -95369755 - MIR SINE MIR -71 191 99 245 347 0 0 chr1 186824202 186824274 -95369390 + L2 LINE L2 3234 3305 -8 628 154 147 26 chr1 186824635 186824791 -95368873 + MIR SINE MIR 85 259 -3 26 0 0 0 chr1 186824865 186824891 -95368773 + AT_rich Low_complexity Low_complexity 1 26 0 432 37 0 0 chr1 186825663 186825717 -95367947 + (TG)n Simple_repeat Simple_repeat 2 55 0 827 251 32 18 chr1 186827804 186828023 -95365641 - MIR SINE MIR -27 235 14 21 36 0 0 chr1 186829531 186829559 -95364105 + AT_rich Low_complexity Low_complexity 1 28 0 393 22 0 0 chr1 186831557 186831603 -95362061 + (TG)n Simple_repeat Simple_repeat 1 46 0 905 290 207 27 chr1 186831938 186832100 -95361564 + L2 LINE L2 2153 2284 -1030 1255 178 117 61 chr1 186832100 186832426 -95361238 + MER2 DNA MER2_type 1 344 0 905 290 207 27 chr1 186832426 186832893 -95360771 + L2 LINE L2 2284 2923 -391 1926 165 29 9 chr1 186832893 186833233 -95360431 + MER7A DNA MER2_type 2 346 0 905 290 207 27 chr1 186833233 186833301 -95360363 + L2 LINE L2 2923 2977 -337 180 176 0 0 chr1 186833301 186833335 -95360329 + CT-rich Low_complexity Low_complexity 2 35 0 278 259 191 30 chr1 186833473 186833604 -95360060 + L2 LINE L2 3159 3310 -3 234 280 48 40 chr1 186833953 186834078 -95359586 + MIR SINE MIR 96 221 -41 537 327 18 5 chr1 186835429 186835646 -95358018 + L3b LINE CR1 1277 1496 -87 275 266 148 39 chr1 186835902 186836105 -95357559 + MIR SINE MIR 32 256 -6 280 244 179 24 chr1 186836284 186836407 -95357257 + MIR SINE MIR 20 161 -101 422 300 89 0 chr1 186836419 186836609 -95357055 - MIR SINE MIR -20 242 36 36 0 0 0 chr1 186837589 186837625 -95356039 + AT_rich Low_complexity Low_complexity 1 36 0 232 240 27 27 chr1 186837667 186837742 -95355922 + MER20B DNA MER1_type 289 363 -420 207 205 0 0 chr1 186838514 186838553 -95355111 + (TG)n Simple_repeat Simple_repeat 1 39 0 199 242 16 32 chr1 186839749 186839811 -95353853 - MER5B DNA MER1_type -36 142 82 1071 213 46 65 chr1 186840004 186840268 -95353396 - MLT1D LTR MaLR -8 497 201 219 36 0 0 chr1 186840268 186840296 -95353368 + (TG)n Simple_repeat Simple_repeat 2 29 0 1071 213 46 65 chr1 186840296 186840409 -95353255 - MLT1D LTR MaLR -304 201 87 206 286 71 0 chr1 186840449 186840505 -95353159 - L2 LINE L2 -30 3283 3224 254 296 32 48 chr1 186840538 186840578 -95353086 - L3 LINE CR1 -3 1574 1535 948 172 63 0 chr1 186840578 186840752 -95352912 + MER5A DNA MER1_type 3 187 -2 254 296 32 48 chr1 186840752 186840836 -95352828 - L3 LINE CR1 -42 1535 1452 309 301 0 0 chr1 186841235 186841338 -95352326 + MIR3 SINE MIR 66 169 -39 602 238 76 13 chr1 186841418 186841594 -95352070 - MIR SINE MIR -37 225 39 2715 30 3 0 chr1 186841608 186841912 -95351752 + AluY SINE Alu 1 305 -6 2168 111 0 0 chr1 186842668 186842981 -95350683 + AluSc SINE Alu 3 315 0 448 259 9 0 chr1 186843222 186843330 -95350334 + MIR3 SINE MIR 93 201 -7 2009 173 40 3 chr1 186843418 186843770 -95349894 - MLT1A1 LTR MaLR 0 365 1 494 298 21 43 chr1 186843813 186844001 -95349663 - MIR SINE MIR -70 192 9 257 322 7 27 chr1 186844247 186844396 -95349268 + L1M2 LINE L1 5494 5639 -652 2292 104 0 0 chr1 186844512 186844809 -95348855 + AluSx SINE Alu 1 297 -15 582 246 98 39 chr1 186844947 186845252 -95348412 + L1ME4a LINE L1 5798 6120 -1 214 107 71 0 chr1 186845258 186845314 -95348350 + (TA)n Simple_repeat Simple_repeat 2 61 0 255 276 181 9 chr1 186846851 186846967 -95346697 + L2 LINE L2 3119 3254 -18 542 268 7 0 chr1 186847076 186847214 -95346450 - MER5B DNA MER1_type -4 174 36 318 341 77 24 chr1 186847624 186847794 -95345870 + MIR SINE MIR 31 209 -53 413 241 128 7 chr1 186848758 186848899 -95344765 - MIR SINE MIR -16 246 89 204 256 58 0 chr1 186851516 186851602 -95342062 + A-rich Low_complexity Low_complexity 4 94 0 320 281 25 89 chr1 186851754 186851957 -95341707 - MIR3 SINE MIR 0 208 19 2105 129 0 19 chr1 186851986 186852304 -95341360 + AluSx SINE Alu 1 312 0 565 239 0 0 chr1 186853942 186854059 -95339605 + MIR SINE MIR 56 172 -90 285 301 60 79 chr1 186854443 186854980 -95338684 + L2 LINE L2 2716 3252 -20 253 153 42 69 chr1 186856120 186856192 -95337472 + MLT1I LTR MaLR 80 149 -260 269 241 9 111 chr1 186856327 186856435 -95337229 + MLT1H LTR MaLR 453 549 0 22 35 0 0 chr1 186857711 186857740 -95335924 + AT_rich Low_complexity Low_complexity 1 29 0 427 250 110 0 chr1 186858376 186858512 -95335152 - MIR SINE MIR -16 246 96 238 309 147 0 chr1 186859761 186859897 -95333767 - MIR SINE MIR -70 192 37 229 316 52 37 chr1 186862074 186862210 -95331454 + MIR3 SINE MIR 4 141 -67 1329 266 106 27 chr1 186862253 186862734 -95330930 + MLT1G1 LTR MaLR 75 593 -2 358 143 32 159 chr1 186862974 186863100 -95330564 - MER45A DNA AcHobo 0 178 69 189 0 0 0 chr1 186863302 186863323 -95330341 + (T)n Simple_repeat Simple_repeat 1 21 0 529 252 64 27 chr1 186863335 186863639 -95330025 - LTR33 LTR ERVL -48 473 62 637 268 50 92 chr1 186868393 186868793 -95324871 + MLT1J LTR MaLR 110 492 -19 387 0 0 0 chr1 186868829 186868872 -95324792 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 218 117 71 chr1 186868885 186869124 -95324540 + L1M4 LINE L1 3968 4217 -1929 23 0 0 0 chr1 186869330 186869353 -95324311 + AT_rich Low_complexity Low_complexity 1 23 0 464 247 100 86 chr1 186869436 186869727 -95323937 + L1ME4a LINE L1 5816 6110 -11 246 59 0 0 chr1 186869974 186870008 -95323656 - L1P LINE L1 -808 5357 5324 2901 141 15 32 chr1 186870738 186871269 -95322395 + L1MB7 LINE L1 5663 6184 0 1381 179 32 3 chr1 186871414 186871722 -95321942 + L1M4 LINE L1 4960 5276 -870 * 4939 160 42 4 chr1 186871716 186872650 -95321014 + L1MB5 LINE L1 5195 6166 -8 307 291 97 0 chr1 186872891 186872994 -95320670 + MIR SINE MIR 33 145 -63 426 227 65 13 chr1 186873161 186873315 -95320349 + MER113 DNA MER1_type? 1 162 -359 215 178 22 0 chr1 186873924 186873969 -95319695 + L2 LINE L2 3224 3269 -3 26 0 0 0 chr1 186874454 186874480 -95319184 + AT_rich Low_complexity Low_complexity 1 26 0 251 262 71 12 chr1 186874549 186874633 -95319031 - MIR SINE MIR -65 197 109 226 284 0 25 chr1 186875252 186875333 -95318331 + L1MC4 LINE L1 6640 6718 -1324 209 250 18 0 chr1 186875670 186875726 -95317938 + (TTA)n Simple_repeat Simple_repeat 2 58 0 331 327 69 0 chr1 186876337 186876496 -95317168 - MIR3 SINE MIR -22 186 17 694 163 55 114 chr1 186876637 186876839 -95316825 + MER20 DNA MER1_type 29 218 -1 1934 156 32 40 chr1 186878813 186879191 -95314473 - THE1C LTR MaLR 0 375 1 214 211 154 0 chr1 186879736 186879788 -95313876 + MIR SINE MIR 33 92 -116 543 257 123 5 chr1 186879829 186880016 -95313648 - MIR SINE MIR 0 262 54 1808 161 17 7 chr1 186880016 186880314 -95313350 + AluJo SINE Alu 1 301 -11 2446 208 112 54 chr1 186880321 186881135 -95312529 + L1ME LINE L1 136 996 -5209 771 188 129 0 chr1 186881140 186881310 -95312354 + MER3 DNA MER1_type 1 192 -17 561 176 38 8 chr1 186881320 186881451 -95312213 + L1ME LINE L1 992 1126 -5079 2007 137 3 7 chr1 186881459 186881766 -95311898 + AluSq SINE Alu 1 306 -7 967 256 38 46 chr1 186881795 186882248 -95311416 + L1ME LINE L1 1926 2374 -4022 273 260 14 0 chr1 186882335 186882408 -95311256 + (TA)n Simple_repeat Simple_repeat 2 75 0 283 296 13 53 chr1 186882746 186882908 -95310756 + MIR SINE MIR 5 153 -73 1899 120 33 4 chr1 186882984 186883283 -95310381 - AluSp SINE Alu 0 307 1 26 30 0 0 chr1 186883384 186883417 -95310247 + AT_rich Low_complexity Low_complexity 1 33 0 252 122 0 0 chr1 186883554 186883595 -95310069 + (CA)n Simple_repeat Simple_repeat 2 42 0 268 301 14 0 chr1 186883625 186883698 -95309966 + MIR3 SINE MIR 108 181 -27 202 305 106 43 chr1 186883757 186883898 -95309766 - MIR SINE MIR -46 216 67 632 233 101 5 chr1 186884219 186884408 -95309256 - MIR SINE MIR -45 217 11 268 280 45 15 chr1 186886436 186886568 -95307096 + L2 LINE L2 2364 2499 -815 338 276 83 64 chr1 186886623 186886887 -95306777 - L2 LINE L2 -75 3238 2970 368 205 0 48 chr1 186886927 186887010 -95306654 + L2 LINE L2 3235 3313 0 276 120 0 0 chr1 186887679 186887729 -95305935 + (TG)n Simple_repeat Simple_repeat 2 51 0 210 337 71 10 chr1 186888882 186888980 -95304684 - MIR SINE MIR -147 115 12 1549 153 56 21 chr1 186889932 186890219 -95303445 - AluJo SINE Alu -15 297 1 331 294 159 56 chr1 186890250 186890853 -95302811 + L2 LINE L2 1987 2651 -663 214 107 71 0 chr1 186891867 186891923 -95301741 + (TA)n Simple_repeat Simple_repeat 2 61 0 523 260 95 33 chr1 186891929 186892233 -95301431 - L1ME4a LINE L1 -1 6120 5798 2165 104 0 0 chr1 186892371 186892668 -95300996 - AluSx SINE Alu -15 297 1 268 322 7 27 chr1 186892784 186892933 -95300731 - L1M2 LINE L1 -652 5639 5494 578 336 18 35 chr1 186893178 186893407 -95300257 + MIR SINE MIR 9 233 -29 2016 173 40 3 chr1 186893409 186893761 -95299903 + MLT1A1 LTR MaLR 1 365 0 490 259 9 0 chr1 186893849 186893957 -95299707 - MIR3 SINE MIR -7 201 93 1902 113 3 7 chr1 186894198 186894516 -95299148 - AluY SINE Alu 0 317 1 391 246 94 36 chr1 186894538 186894676 -95298988 - L3 LINE CR1 -627 950 805 238 340 73 47 chr1 186895662 186895812 -95297852 + L2 LINE L2 3108 3261 -11 445 285 43 60 chr1 186895945 186896151 -95297513 + MIR SINE MIR 10 213 -49 659 312 73 12 chr1 186896371 186896618 -95297046 + MIR SINE MIR 1 262 0 22 0 0 0 chr1 186897471 186897493 -95296171 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 186897548 186897572 -95296092 + AT_rich Low_complexity Low_complexity 1 24 0 214 123 228 18 chr1 186898294 186898351 -95295313 + L2 LINE L2 3245 3313 0 336 209 9 23 chr1 186899380 186899598 -95294066 + G-rich Low_complexity Low_complexity 1 214 0 1592 143 59 21 chr1 186899875 186900161 -95293503 - AluJo SINE Alu -15 297 1 440 305 148 55 chr1 186900192 186900924 -95292740 + L2 LINE L2 1987 2786 -528 289 305 30 23 chr1 186901052 186901183 -95292481 + L2 LINE L2 2916 3047 -225 299 266 172 30 chr1 186901213 186901354 -95292310 - L2 LINE L2 0 3313 3143 198 0 0 0 chr1 186901354 186901376 -95292288 + (TA)n Simple_repeat Simple_repeat 2 23 0 299 266 172 30 chr1 186901376 186901403 -95292261 - L2 LINE L2 -170 3143 3121 191 148 19 111 chr1 186901585 186901639 -95292025 + L2 LINE L2 3224 3272 0 523 227 34 87 chr1 186902628 186902835 -95290829 + MIR SINE MIR 12 207 -55 749 274 75 13 chr1 186902883 186903109 -95290555 - MIR SINE MIR -21 241 2 342 0 0 0 chr1 186903160 186903198 -95290466 + (TAA)n Simple_repeat Simple_repeat 2 39 0 762 182 0 8 chr1 186905511 186905643 -95288021 + FLAM_C SINE Alu 1 131 -2 216 0 0 0 chr1 186909938 186909962 -95283702 + (A)n Simple_repeat Simple_repeat 1 24 0 257 349 73 0 chr1 186910175 186910284 -95283380 + L2 LINE L2 3151 3267 -5 28 0 0 0 chr1 186910583 186910611 -95283053 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 59 0 chr1 186914490 186914524 -95279140 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 403 254 135 8 chr1 186917279 186917405 -95276259 - MIR SINE MIR 0 262 121 244 335 32 52 chr1 186917798 186917953 -95275711 - MIR SINE MIR -43 219 68 364 303 105 0 chr1 186918494 186918646 -95275018 + MIR3 SINE MIR 30 197 -11 208 250 0 0 chr1 186919180 186919220 -95274444 - MIR3 SINE MIR -21 187 148 419 297 145 46 chr1 186919227 186919508 -95274156 - L3 LINE CR1 -206 1371 1119 2137 74 51 3 chr1 186919508 186919804 -95273860 - AluY SINE Alu -1 310 1 419 297 145 46 chr1 186919804 186919963 -95273701 - L3 LINE CR1 -458 1119 805 238 340 73 47 chr1 186920950 186921100 -95272564 + L2 LINE L2 3108 3261 -11 445 285 43 60 chr1 186921233 186921439 -95272225 + MIR SINE MIR 10 213 -49 659 312 73 12 chr1 186921659 186921906 -95271758 + MIR SINE MIR 1 262 0 22 0 0 0 chr1 186922760 186922782 -95270882 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 186922837 186922861 -95270803 + AT_rich Low_complexity Low_complexity 1 24 0 214 123 228 18 chr1 186923583 186923640 -95270024 + L2 LINE L2 3245 3313 0 191 225 84 70 chr1 186924936 186925007 -95268657 - MIR3 SINE MIR -9 199 128 1678 160 4 4 chr1 186926385 186926666 -95266998 - AluJo SINE Alu -21 291 11 1355 194 71 21 chr1 186926712 186927037 -95266627 + MER58B DNA MER1_type 1 341 0 1111 212 325 42 chr1 186927663 186928281 -95265383 + LTR50 LTR ERVL 1 793 -2 2975 132 0 7 chr1 186929887 186930318 -95263346 + MSTA LTR MaLR 1 428 0 351 0 0 0 chr1 186930605 186930644 -95263020 + (CA)n Simple_repeat Simple_repeat 1 39 0 772 300 108 10 chr1 186930929 186931319 -95262345 + L2 LINE L2 2886 3313 0 626 196 33 46 chr1 186932027 186932180 -95261484 - MIR SINE MIR -2 260 110 489 59 15 0 chr1 186934888 186934956 -95258708 + MER41B LTR ERV1 477 545 -90 23 33 0 0 chr1 186935897 186935927 -95257737 + GC_rich Low_complexity Low_complexity 1 30 0 200 167 0 42 chr1 186936560 186936608 -95257056 + CT-rich Low_complexity Low_complexity 1 46 0 487 263 29 0 chr1 186936894 186937031 -95256633 - L2 LINE L2 -6 3307 3167 7715 31 0 0 chr1 186937180 186938204 -95255460 - L1PA4 LINE L1 0 6155 5132 1878 137 0 3 chr1 186938210 186938502 -95255162 - AluSx SINE Alu -21 291 1 410 210 92 8 chr1 186938593 186938712 -95254952 - L1ME4a LINE L1 -2 6119 5991 493 313 115 5 chr1 186938968 186939176 -95254488 + MIR SINE MIR 29 259 -3 190 353 15 0 chr1 186939763 186939831 -95253833 - MIR SINE MIR -69 139 71 219 284 223 7 chr1 186940821 186940969 -95252695 + L2 LINE L2 2782 2961 -353 423 56 0 0 chr1 186941072 186941126 -95252538 + (CA)n Simple_repeat Simple_repeat 2 55 0 712 290 44 41 chr1 186941151 186941468 -95252196 + L2 LINE L2 2979 3296 -17 657 250 140 41 chr1 186942173 186942537 -95251127 + MLT1I LTR MaLR 5 404 -5 276 230 230 0 chr1 186942569 186942643 -95251021 - MIR SINE MIR -60 202 112 230 262 233 0 chr1 186943040 186943137 -95250527 + MIR3 SINE MIR 30 150 -58 489 329 24 6 chr1 186943137 186943307 -95250357 - MER5B DNA MER1_type -3 175 3 713 345 56 19 chr1 186944372 186944746 -95248918 - LTR16A LTR ERVL -6 444 57 2639 178 41 6 chr1 186944881 186945415 -95248249 - L1MB4 LINE L1 0 6180 5628 892 193 123 61 chr1 186945571 186945897 -95247767 + MLT1D LTR MaLR 1 346 -159 553 267 5 81 chr1 186946062 186946272 -95247392 - L2 LINE L2 0 3313 3120 338 232 77 77 chr1 186946290 186946445 -95247219 - L1ME4a LINE L1 -22 6099 5945 225 0 0 0 chr1 186947304 186947329 -95246335 + (TG)n Simple_repeat Simple_repeat 2 26 0 679 321 22 18 chr1 186948485 186948709 -95244955 + MIR SINE MIR 2 226 -36 682 326 85 27 chr1 186948818 186949281 -95244383 + MLT1K LTR MaLR 15 564 -24 352 266 85 74 chr1 186949571 186949751 -95243913 + MIR SINE MIR 14 193 -15 251 299 26 26 chr1 186950247 186950364 -95243300 + L1ME3A LINE L1 5054 5170 -976 1514 173 70 20 chr1 186950414 186950714 -95242950 - MLT1A1 LTR MaLR -50 315 1 418 317 63 42 chr1 186950790 186951124 -95242540 + L1ME3A LINE L1 5357 5697 -473 370 298 19 58 chr1 186951164 186951372 -95242292 + L1ME3A LINE L1 5795 5994 -176 1300 139 0 29 chr1 186951572 186951780 -95241884 - AluJb SINE Alu -24 288 87 24 0 0 0 chr1 186951831 186951855 -95241809 + AT_rich Low_complexity Low_complexity 1 24 0 440 263 179 6 chr1 186952015 186952171 -95241493 - MIR3 SINE MIR -24 184 2 497 278 14 0 chr1 186953316 186953460 -95240204 - MARNA DNA Mariner -180 406 261 253 193 24 48 chr1 186953570 186953653 -95240011 - MARNA DNA Mariner -352 234 154 1130 94 44 0 chr1 186953829 186953988 -95239676 + AluSg/x SINE Alu 137 302 -10 262 242 105 57 chr1 186954020 186954144 -95239520 + MIR SINE MIR 17 146 -116 1366 114 5 0 chr1 186954165 186954358 -95239306 + AluSg/x SINE Alu 102 295 -17 256 228 114 65 chr1 186954389 186954512 -95239152 + MIR SINE MIR 17 145 -117 427 324 73 61 chr1 186954880 186955288 -95238376 - L2 LINE L2 -8 3264 2852 867 170 111 0 chr1 186956717 186956888 -95236776 - MER20 DNA MER1_type 0 219 30 2114 99 27 0 chr1 186956920 186957213 -95236451 - AluSq SINE Alu -12 301 1 626 296 49 45 chr1 186957624 186957871 -95235793 - MIR SINE MIR 0 262 15 353 227 340 10 chr1 186958183 186958377 -95235287 - MIR SINE MIR 0 262 5 396 308 32 32 chr1 186958397 186958553 -95235111 - MIR SINE MIR -91 171 16 1915 141 7 0 chr1 186959101 186959399 -95234265 + AluSx SINE Alu 1 300 -12 180 259 25 74 chr1 186959843 186959918 -95233746 - L2 LINE L2 -9 3263 3193 475 188 43 72 chr1 186959918 186960056 -95233608 + MER91B DNA MER1_type 1 134 -56 223 191 128 0 chr1 186960076 186960123 -95233541 - L2 LINE L2 -70 3202 3150 592 243 0 0 chr1 186961688 186961799 -95231865 - FLAM_A SINE Alu -19 123 13 2129 101 0 3 chr1 186961854 186962150 -95231514 - AluSq SINE Alu -18 295 1 188 359 0 0 chr1 186962197 186962261 -95231403 - L2 LINE L2 -68 3204 3141 301 271 9 9 chr1 186962271 186962378 -95231286 + (CA)n Simple_repeat Simple_repeat 1 107 0 252 293 4 12 chr1 186962416 186962665 -95230999 + (CA)n Simple_repeat Simple_repeat 1 246 0 259 263 13 0 chr1 186962682 186962838 -95230826 + (CA)n Simple_repeat Simple_repeat 1 158 0 306 296 59 12 chr1 186964207 186964376 -95229288 + L1ME4a LINE L1 5728 5904 -217 2122 112 7 0 chr1 186964512 186964815 -95228849 - AluSp SINE Alu 0 313 9 34 0 0 0 chr1 186964815 186964849 -95228815 + AT_rich Low_complexity Low_complexity 1 34 0 210 256 58 23 chr1 186965045 186965131 -95228533 - MIR SINE MIR -100 108 20 720 288 121 38 chr1 186965156 186965552 -95228112 + MLT1J2 LTR MaLR 22 450 0 244 286 110 32 chr1 186965962 186966116 -95227548 - MIR3 SINE MIR -26 182 17 403 308 23 15 chr1 186966165 186966295 -95227369 + MIR SINE MIR 23 153 -109 354 260 0 70 chr1 186966344 186966444 -95227220 - L2 LINE L2 -33 3280 3188 250 167 139 42 chr1 186966452 186966524 -95227140 + MIR SINE MIR 172 250 -12 208 229 0 0 chr1 186966970 186967005 -95226659 - L2 LINE L2 -14 3258 3224 2157 247 53 45 chr1 186967112 186967785 -95225879 + L2 LINE L2 1930 2608 -706 270 317 45 91 chr1 186968149 186968392 -95225272 - L2 LINE L2 -8 3264 3033 278 50 25 0 chr1 186969257 186969297 -95224367 + (CA)n Simple_repeat Simple_repeat 2 42 0 244 341 59 16 chr1 186969508 186969670 -95223994 - MIR3 SINE MIR -81 181 15 191 350 50 25 chr1 186969722 186969842 -95223822 - L2 LINE L2 -1 3312 3190 213 291 64 0 chr1 186970924 186971034 -95222630 + MIR SINE MIR 92 208 -54 247 269 37 19 chr1 186972081 186972189 -95221475 + GA-rich Low_complexity Low_complexity 1 110 0 219 351 66 26 chr1 186972199 186972350 -95221314 + MIR3 SINE MIR 15 171 -37 208 301 0 41 chr1 186972488 186972561 -95221103 + CT-rich Low_complexity Low_complexity 4 73 0 357 269 0 19 chr1 186973099 186973203 -95220461 - MIR SINE MIR -1 261 160 235 375 33 33 chr1 186973497 186973649 -95220015 + MIR3 SINE MIR 51 202 -6 238 349 138 36 chr1 186973730 186974034 -95219630 - L3b LINE CR1 -147 1436 1102 208 233 0 0 chr1 186974587 186974630 -95219034 + L2 LINE L2 3271 3313 0 1743 275 137 13 chr1 186974691 186975573 -95218091 - L2 LINE L2 -4 3309 2315 412 265 85 32 chr1 186975605 186975794 -95217870 + MIR3 SINE MIR 1 199 -9 24 0 0 0 chr1 186977323 186977347 -95216317 + AT_rich Low_complexity Low_complexity 1 24 0 2092 119 0 25 chr1 186977585 186977905 -95215759 + AluSx SINE Alu 1 312 0 285 234 78 16 chr1 186979003 186979131 -95214533 + L1ME4a LINE L1 5975 6110 -11 925 140 0 0 chr1 186979161 186979297 -95214367 - AluJb SINE Alu -18 294 159 278 171 0 0 chr1 186979297 186979338 -95214326 - Alu SINE Alu -260 42 2 315 271 108 23 chr1 186980230 186980359 -95213305 - L2 LINE L2 0 3272 3133 21 0 0 0 chr1 186981040 186981061 -95212603 + AT_rich Low_complexity Low_complexity 1 21 0 425 205 46 99 chr1 186981203 186981290 -95212374 - MER5B DNA MER1_type -35 143 66 1902 137 23 7 chr1 186981290 186981596 -95212068 - AluSx SINE Alu -1 311 1 425 205 46 99 chr1 186981596 186981659 -95212005 - MER5B DNA MER1_type -112 66 1 254 226 161 21 chr1 186982001 186982094 -95211570 - MIR SINE MIR -65 197 92 305 223 175 60 chr1 186982214 186982380 -95211284 - L2 LINE L2 -215 3057 2873 233 238 95 0 chr1 186983598 186983661 -95210003 + MIR3 SINE MIR 133 201 -7 278 237 172 21 chr1 186983988 186984081 -95209583 + L2 LINE L2 3161 3267 -5 210 297 0 63 chr1 186984231 186984342 -95209322 - MIR SINE MIR -80 182 79 431 319 23 60 chr1 186985037 186985253 -95208411 + L2 LINE L2 3103 3310 -3 336 343 22 7 chr1 186985738 186985875 -95207789 + MIR3 SINE MIR 24 162 -46 1665 235 65 33 chr1 186986460 186986949 -95206715 - MLT2B1 LTR ERVL -2 518 14 2163 97 0 28 chr1 186987167 186987506 -95206158 - AluY SINE Alu 0 331 1 226 132 240 124 chr1 186989189 186989310 -95204354 - L2 LINE L2 0 3272 3138 385 197 0 0 chr1 186990029 186990105 -95203559 - L2 LINE L2 -2 3311 3236 213 193 244 34 chr1 186990470 186990589 -95203075 - MIR SINE MIR -2 260 117 284 337 0 0 chr1 186990651 186990743 -95202921 + L2 LINE L2 2992 3083 -189 312 246 138 36 chr1 186991617 186991812 -95201852 - MER113 DNA MER1_type? -303 218 4 22 35 0 0 chr1 186992104 186992133 -95201531 + AT_rich Low_complexity Low_complexity 1 29 0 822 228 59 109 chr1 186992657 186993078 -95200586 + MSTC LTR MaLR 1 400 -28 212 263 118 13 chr1 186993386 186993462 -95200202 + MIR3 SINE MIR 114 197 -11 396 276 77 0 chr1 186993735 186993895 -95199769 + MIR SINE MIR 11 181 -63 312 27 0 0 chr1 186994037 186994074 -95199590 + (TG)n Simple_repeat Simple_repeat 2 38 0 275 258 0 0 chr1 186994719 186994781 -95198883 - MIR SINE MIR 0 262 201 1149 177 35 17 chr1 186994781 186995013 -95198651 + MER46A DNA MER2_type 1 236 0 708 311 0 28 chr1 186995019 186995273 -95198391 - MIR SINE MIR -8 254 8 632 222 12 43 chr1 186995585 186995747 -95197917 - MER58B DNA MER1_type -1 340 184 237 224 92 41 chr1 186995883 186995981 -95197683 - MIR3 SINE MIR -13 195 93 242 358 21 0 chr1 186997713 186997808 -95195856 + MIR SINE MIR 49 145 -63 1489 156 0 4 chr1 186997950 186998187 -95195477 + MER46A DNA MER2_type 1 236 0 209 234 91 0 chr1 186998188 186998265 -95195399 - MIR SINE MIR -65 197 114 208 239 0 0 chr1 186998259 186998305 -95195359 + L2 LINE L2 3258 3303 -10 * 211 151 321 0 chr1 186998431 186998484 -95195180 + MIR SINE MIR 82 151 -57 320 301 0 0 chr1 186999020 186999103 -95194561 + G-rich Low_complexity Low_complexity 1 83 0 512 266 25 49 chr1 186999919 187000122 -95193542 + MIR SINE MIR 1 198 -64 1590 144 0 0 chr1 187000122 187000358 -95193306 - MER46A DNA MER2_type 0 236 1 803 236 9 45 chr1 187001185 187001405 -95192259 + MIR SINE MIR 23 234 -28 554 266 45 0 chr1 187002508 187002662 -95191002 - MIR SINE MIR -54 208 48 266 322 61 9 chr1 187002774 187002889 -95190775 + MIR3 SINE MIR 82 202 -6 280 271 47 24 chr1 187003374 187003459 -95190205 + L2 LINE L2 3169 3255 -17 246 220 0 0 chr1 187004914 187004973 -95188691 + (CCG)n Simple_repeat Simple_repeat 3 61 0 747 311 59 49 chr1 187005619 187006111 -95187553 - L3 LINE CR1 -24 1553 1057 489 304 65 15 chr1 187006644 187006904 -95186760 - L3 LINE CR1 -700 877 605 494 259 206 5 chr1 187006998 187007187 -95186477 + MIR SINE MIR 25 251 -11 321 320 30 0 chr1 187007241 187007341 -95186323 + MIR3 SINE MIR 85 187 -21 2602 154 14 5 chr1 187008058 187008479 -95185185 + MSTB LTR MaLR 1 425 -1 181 111 0 0 chr1 187008796 187008823 -95184841 + L2 LINE L2 3272 3298 -15 30 27 0 0 chr1 187009547 187009584 -95184080 + AT_rich Low_complexity Low_complexity 1 37 0 191 259 19 0 chr1 187009749 187009803 -95183861 - MIR SINE MIR -117 91 37 429 350 87 38 chr1 187009953 187010345 -95183319 - L2 LINE L2 -6 3307 2897 224 289 0 48 chr1 187010788 187010871 -95182793 + L2 LINE L2 3235 3313 0 610 265 29 6 chr1 187011309 187011479 -95182185 - MER5B DNA MER1_type -4 174 1 205 337 40 20 chr1 187011910 187012011 -95181653 + L2 LINE L2 3208 3310 -3 * 252 345 48 0 chr1 187011979 187012063 -95181601 - L2 LINE L2 -25 3288 3201 312 290 49 38 chr1 187013632 187013815 -95179849 + MER5A DNA MER1_type 3 187 -2 669 146 10 181 chr1 187014760 187014965 -95178699 - FRAM SINE Alu -7 169 1 225 65 0 0 chr1 187015317 187015348 -95178316 + (TC)n Simple_repeat Simple_repeat 2 32 0 373 280 72 39 chr1 187015722 187015929 -95177735 + L2 LINE L2 3100 3313 0 255 212 0 45 chr1 187016026 187016092 -95177572 + L2 LINE L2 3242 3304 -9 255 170 0 0 chr1 187016237 187016284 -95177380 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 197 310 48 41 chr1 187016318 187016463 -95177201 + MIR SINE MIR 46 191 -71 189 267 17 17 chr1 187017506 187017566 -95176098 + MIR SINE MIR 37 96 -112 180 325 24 0 chr1 187017854 187017937 -95175727 + L3b LINE CR1 1303 1387 -196 315 255 55 14 chr1 187018147 187018292 -95175372 + L1ME4a LINE L1 5971 6121 0 3361 200 41 36 chr1 187018495 187019296 -95174368 + L1MA9 LINE L1 5469 6273 -39 282 342 145 16 chr1 187019615 187019673 -95173991 + MIR SINE MIR 34 83 -179 2109 115 91 21 chr1 187019673 187020013 -95173651 - THE1B LTR MaLR 0 364 1 282 342 145 16 chr1 187020013 187020147 -95173517 + MIR SINE MIR 83 251 -11 256 257 101 37 chr1 187020453 187020562 -95173102 - L2 LINE L2 -9 3263 3148 1038 316 78 20 chr1 187020883 187021607 -95172057 + L2 LINE L2 2271 3050 -222 1052 289 147 27 chr1 187021840 187022844 -95170820 + HAL1 LINE L1 790 1914 -593 227 172 69 58 chr1 187023156 187023243 -95170421 + HAL1 LINE L1 2096 2183 -324 268 232 196 77 chr1 187023260 187023428 -95170236 + HAL1b LINE L1 746 933 -415 21 0 0 0 chr1 187023428 187023449 -95170215 + AT_rich Low_complexity Low_complexity 1 21 0 320 203 29 80 chr1 187023507 187023645 -95170019 + HAL1 LINE L1 2249 2379 -128 193 246 0 18 chr1 187023920 187023977 -95169687 + L3 LINE CR1 905 960 -617 271 267 147 13 chr1 187024021 187024212 -95169452 + MIR SINE MIR 5 262 0 532 224 21 21 chr1 187024402 187024545 -95169119 - MIR SINE MIR -2 260 118 266 217 0 60 chr1 187024550 187024633 -95169031 + MER116 DNA Mariner 1 78 -2 2118 141 0 7 chr1 187024839 187025145 -95168519 + AluSx SINE Alu 1 304 -8 265 266 43 0 chr1 187025184 187025278 -95168386 - MER69 DNA AcHobo 0 2526 2429 290 313 76 23 chr1 187026849 187026980 -95166684 + MIR SINE MIR 113 250 -12 255 61 0 0 chr1 187027914 187027947 -95165717 + (TG)n Simple_repeat Simple_repeat 2 34 0 215 238 0 0 chr1 187028070 187028112 -95165552 + GA-rich Low_complexity Low_complexity 2 43 0 289 336 0 10 chr1 187028997 187029101 -95164563 - MIR3 SINE MIR -22 186 84 332 219 47 0 chr1 187029297 187029361 -95164303 - MER81 DNA DNA -47 67 1 351 0 0 0 chr1 187029617 187029656 -95164008 + (CA)n Simple_repeat Simple_repeat 2 40 0 539 258 58 11 chr1 187030225 187030415 -95163249 - L2 LINE L2 -10 3303 3105 1797 138 6 66 chr1 187030753 187031071 -95162593 + AluSx SINE Alu 1 299 -13 2223 114 0 23 chr1 187031835 187032143 -95161521 + AluSg SINE Alu 1 301 -9 465 281 62 6 chr1 187032320 187032480 -95161184 - MIR SINE MIR -46 216 48 314 294 81 62 chr1 187032518 187032678 -95160986 + MIR SINE MIR 20 182 -80 538 73 0 0 chr1 187033086 187033154 -95160510 + Alu SINE Alu 2 69 -249 1706 233 82 43 chr1 187033967 187034958 -95158706 - L2 LINE L2 -12 3301 2291 554 254 91 25 chr1 187035305 187035521 -95158143 - MIR SINE MIR -6 256 25 283 286 59 25 chr1 187035912 187036031 -95157633 - MIR SINE MIR -62 146 24 226 234 43 0 chr1 187036133 187036180 -95157484 - L2 LINE L2 -16 3297 3249 2543 190 66 0 chr1 187036509 187036977 -95156687 - LTR53 LTR ERVL 0 519 21 2587 205 120 134 chr1 187037010 187037557 -95156107 - L1MC3 LINE L1 0 7785 7232 457 253 1 1 chr1 187037557 187037648 -95156016 - MLT1F1 LTR MaLR -444 123 40 2587 205 120 134 chr1 187037648 187037754 -95155910 - L1MC3 LINE L1 -553 7232 7126 368 40 20 0 chr1 187037754 187037804 -95155860 + (TA)n Simple_repeat Simple_repeat 1 51 0 2587 205 120 134 chr1 187037804 187037893 -95155771 - L1MC3 LINE L1 -659 7126 7037 3744 92 80 40 chr1 187037893 187038470 -95155194 + L1PB2 LINE L1 5547 6146 -5 2587 205 120 134 chr1 187038470 187038827 -95154837 - L1MC3 LINE L1 -748 7037 6611 2456 83 0 0 chr1 187038827 187039127 -95154537 - AluSc SINE Alu -9 300 1 2587 205 120 134 chr1 187039127 187039259 -95154405 - L1MC3 LINE L1 -1174 6611 6479 956 199 44 0 chr1 187039359 187039540 -95154124 - MER5A DNA MER1_type 0 189 1 511 274 44 0 chr1 187039640 187039775 -95153889 + L2 LINE L2 3132 3272 0 277 86 35 0 chr1 187040096 187040154 -95153510 + (TA)n Simple_repeat Simple_repeat 2 61 0 183 42 0 0 chr1 187040271 187040295 -95153369 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 3078 58 8 0 chr1 187040295 187040657 -95153007 - L1PA7 LINE L1 -13 6141 5777 186 280 269 0 chr1 187040980 187041073 -95152591 - L2 LINE L2 -5 3308 3191 1745 134 32 45 chr1 187041133 187041447 -95152217 + AluSx SINE Alu 1 310 -2 739 189 0 12 chr1 187041462 187041631 -95152033 + GA-rich Low_complexity Low_complexity 4 170 0 742 160 17 22 chr1 187041651 187041832 -95151832 + GA-rich Low_complexity Low_complexity 1 180 0 2003 165 18 55 chr1 187042579 187042978 -95150686 + MLT1B LTR MaLR 3 386 -4 262 275 38 69 chr1 187043159 187043223 -95150441 - MIR SINE MIR -111 151 91 2529 111 91 8 chr1 187043223 187043467 -95150197 - MSTA LTR MaLR 0 428 137 2032 108 0 11 chr1 187043467 187043736 -95149928 + AluSc SINE Alu 27 292 -17 2529 111 91 8 chr1 187043736 187043886 -95149778 - MSTA LTR MaLR -291 137 1 262 275 38 69 chr1 187043886 187043952 -95149712 - MIR SINE MIR -171 91 25 648 244 45 17 chr1 187044754 187044930 -95148734 - MIR3 SINE MIR -1 207 27 204 358 44 22 chr1 187044926 187045063 -95148601 + L3 LINE CR1 1028 1167 -410 * 197 328 0 0 chr1 187045087 187045151 -95148513 + L3 LINE CR1 1353 1416 -161 216 122 0 0 chr1 187045406 187045447 -95148217 + (T)n Simple_repeat Simple_repeat 1 41 0 183 129 0 0 chr1 187046916 187046947 -95146717 + (CA)n Simple_repeat Simple_repeat 2 32 0 376 279 88 7 chr1 187047053 187047200 -95146464 + L2 LINE L2 3154 3312 -1 309 100 0 20 chr1 187047395 187047445 -95146219 + LTR33 LTR ERVL 473 521 0 236 143 0 0 chr1 187047520 187047555 -95146109 + MIR SINE MIR 220 254 -8 572 264 11 50 chr1 187047714 187047896 -95145768 - MER5B DNA MER1_type -3 175 1 745 215 34 34 chr1 187048141 187048318 -95145346 + MER5B DNA MER1_type 1 177 -1 2222 118 0 0 chr1 187048731 187049027 -95144637 + AluSx SINE Alu 1 296 -16 280 222 14 56 chr1 187049381 187049453 -95144211 + MIR SINE MIR 77 145 -63 672 269 12 6 chr1 187049466 187049637 -95144027 - MER5B DNA MER1_type -6 172 1 378 260 51 26 chr1 187051278 187051432 -95142232 + MIR SINE MIR 3 154 -54 202 348 143 18 chr1 187052097 187052209 -95141455 + MIR SINE MIR 137 262 0 323 335 94 22 chr1 187052411 187052764 -95140900 - L2 LINE L2 -213 3059 2682 418 157 7 214 chr1 187053284 187053424 -95140240 - MER81 DNA DNA -1 113 3 807 199 156 39 chr1 187053646 187053877 -95139787 - MIR SINE MIR 0 262 5 299 250 22 22 chr1 187053885 187053977 -95139687 - MIR SINE MIR -1 261 170 721 334 137 22 chr1 187054046 187054293 -95139371 - L2 LINE L2 -692 2622 2405 2168 182 5 16 chr1 187054293 187054662 -95139002 + MLT1A1 LTR MaLR 1 365 0 721 334 137 22 chr1 187054662 187055042 -95138622 - L2 LINE L2 -909 2405 1923 293 187 0 55 chr1 187055329 187055420 -95138244 + A-rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr1 187058221 187058242 -95135422 + AT_rich Low_complexity Low_complexity 1 21 0 1051 228 45 20 chr1 187058613 187058859 -95134805 - MIR SINE MIR 0 262 11 899 212 62 6 chr1 187058863 187059042 -95134622 - MER5A DNA MER1_type 0 189 1 246 182 36 18 chr1 187059305 187059360 -95134304 + L2 LINE L2 2131 2186 -1128 1162 187 4 31 chr1 187059403 187059660 -95134004 + AluJo SINE Alu 44 293 -19 2093 118 0 3 chr1 187059748 187060037 -95133627 - AluSq SINE Alu -20 293 6 196 359 152 0 chr1 187062480 187062572 -95131092 + MIR SINE MIR 44 149 -59 2068 222 123 14 chr1 187063932 187064419 -95129245 + MLT1F LTR MaLR 3 542 0 232 330 75 0 chr1 187065513 187065607 -95128057 + L2 LINE L2 3137 3237 -35 3839 176 14 23 chr1 187065844 187066586 -95127078 + L1MB7 LINE L1 5423 6157 -27 856 238 17 0 chr1 187066594 187066766 -95126898 - AluJ SINE Alu -29 283 109 268 0 50 25 chr1 187066805 187066845 -95126819 + L1MB7 LINE L1 6143 6183 -1 2056 134 10 13 chr1 187066857 187067170 -95126494 + AluSx SINE Alu 1 312 0 543 228 55 0 chr1 187067186 187067313 -95126351 + L1ME1 LINE L1 6010 6143 -23 227 293 40 0 chr1 187068708 187068783 -95124881 + MARNA DNA Mariner 140 217 -369 380 244 6 125 chr1 187068914 187069082 -95124582 + MIR3 SINE MIR 50 197 -11 263 289 24 0 chr1 187069262 187069345 -95124319 - MLT1J LTR MaLR 0 511 427 230 71 0 24 chr1 187069349 187069391 -95124273 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 829 293 34 69 chr1 187069420 187069799 -95123865 - MLT1J LTR MaLR -145 366 1 797 197 0 8 chr1 187070239 187070366 -95123298 - AluJ SINE Alu -185 127 2 509 277 43 16 chr1 187071018 187071206 -95122458 - MARNA DNA Mariner -106 480 288 765 162 37 162 chr1 187071292 187071425 -95122239 - MER5A DNA MER1_type 0 189 92 1450 84 16 0 chr1 187071425 187071615 -95122049 - L1PB1 LINE L1 -3 6148 5956 765 162 37 162 chr1 187071615 187071697 -95121967 - MER5A DNA MER1_type -97 92 1 332 299 6 104 chr1 187071988 187072152 -95121512 - MIR3 SINE MIR -11 197 50 1018 242 95 43 chr1 187072770 187073117 -95120547 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr1 187073318 187073346 -95120318 + AT_rich Low_complexity Low_complexity 1 28 0 1895 104 4 4 chr1 187075015 187075274 -95118390 - L1PB1 LINE L1 0 6151 5893 539 271 129 0 chr1 187075615 187075770 -95117894 + MER5A DNA MER1_type 9 183 -6 509 207 96 22 chr1 187075800 187075935 -95117729 + MER5A DNA MER1_type 20 164 -25 183 204 167 0 chr1 187075938 187075992 -95117672 + L2 LINE L2 3243 3305 -8 1647 144 32 11 chr1 187076134 187076419 -95117245 + L1MB7 LINE L1 5875 6165 -19 589 303 32 11 chr1 187076421 187076606 -95117058 + MIR SINE MIR 18 206 -56 2399 86 0 3 chr1 187076620 187076921 -95116743 + AluSq SINE Alu 1 300 -13 1542 195 127 47 chr1 187076928 187077462 -95116202 + MER34C LTR ERV1 1 577 -8 1589 187 111 78 chr1 187077500 187077664 -95116000 - MER39 LTR ERV1 0 707 550 854 154 8 0 chr1 187077664 187077794 -95115870 + FLAM_A SINE Alu 1 131 -2 1589 187 111 78 chr1 187077794 187078191 -95115473 - MER39 LTR ERV1 -157 550 74 2449 7 0 4 chr1 187078191 187078460 -95115204 - AluYa5 SINE Alu -5 306 39 1589 187 111 78 chr1 187078460 187078528 -95115136 - MER39 LTR ERV1 -633 74 10 469 289 114 12 chr1 187078552 187078718 -95114946 - MER5A DNA MER1_type 0 189 7 965 326 61 19 chr1 187078770 187079346 -95114318 + L1MCc LINE L1 14 613 -5810 288 234 0 0 chr1 187079447 187079511 -95114153 + L1MCc LINE L1 827 890 -5533 1257 160 5 10 chr1 187079525 187079725 -95113939 - L1PA16 LINE L1 -9 6157 5959 812 68 0 0 chr1 187079725 187079828 -95113836 - AluY SINE Alu -11 300 198 965 102 0 0 chr1 187079828 187079955 -95113709 - AluSg SINE Alu -183 127 1 5047 166 36 7 chr1 187079955 187081481 -95112183 - L1PA16 LINE L1 -194 5972 4381 288 0 0 0 chr1 187081481 187081513 -95112151 + (TG)n Simple_repeat Simple_repeat 1 32 0 5047 166 36 7 chr1 187081513 187081778 -95111886 - L1PA16 LINE L1 -1785 4381 4125 2381 231 44 23 chr1 187081769 187082156 -95111508 + L1MCc LINE L1 868 1245 -5323 * 2110 160 23 14 chr1 187082156 187082500 -95111164 - MER7A DNA MER2_type -1 345 1 2381 231 44 23 chr1 187082500 187082906 -95110758 + L1MCc LINE L1 1245 1681 -4887 1731 171 0 7 chr1 187082914 187083189 -95110475 + AluJo SINE Alu 9 281 -31 293 278 35 9 chr1 187083258 187083373 -95110291 + L1MCc LINE L1 1706 1823 -5118 * 1457 233 79 9 chr1 187083367 187083834 -95109830 - L1MEc LINE L1 -4579 1817 1318 299 330 104 54 chr1 187083926 187084223 -95109441 - L2 LINE L2 -339 2975 2664 442 169 0 13 chr1 187084390 187084467 -95109197 + MLT1J2 LTR MaLR 55 130 -320 317 264 11 0 chr1 187084459 187084546 -95109118 + MLT1J2 LTR MaLR 361 448 -2 * 241 274 13 131 chr1 187084873 187084909 -95108755 + MIR SINE MIR 68 107 -155 1494 165 79 25 chr1 187084909 187085188 -95108476 - AluJo SINE Alu -7 295 2 241 274 13 131 chr1 187085188 187085304 -95108360 + MIR SINE MIR 107 202 -60 430 256 59 50 chr1 187085304 187085576 -95108088 + MLT1H LTR MaLR 1 319 -230 258 226 23 0 chr1 187085676 187085747 -95107917 + MLT1I LTR MaLR 322 443 -7 200 257 35 80 chr1 187087010 187087123 -95106541 + L2 LINE L2 3015 3122 -150 2320 46 7 0 chr1 187087662 187087973 -95105691 + AluY SINE Alu 1 313 0 186 280 128 24 chr1 187089517 187089642 -95104022 - MIR SINE MIR -66 196 59 1709 160 11 14 chr1 187089807 187090088 -95103576 + AluJo SINE Alu 1 280 -32 829 109 8 0 chr1 187090145 187090264 -95103400 + THE1B LTR MaLR 196 315 -49 530 338 62 14 chr1 187090441 187090799 -95102865 + L1ME LINE L1 5337 5711 -410 369 165 71 24 chr1 187090910 187091080 -95102584 + (TA)n Simple_repeat Simple_repeat 2 179 0 23 54 0 0 chr1 187091082 187091119 -95102545 + AT_rich Low_complexity Low_complexity 1 37 0 232 221 74 25 chr1 187091138 187091301 -95102363 + (TA)n Simple_repeat Simple_repeat 2 172 0 25 51 0 0 chr1 187091331 187091370 -95102294 + AT_rich Low_complexity Low_complexity 1 39 0 207 204 0 0 chr1 187091373 187091417 -95102247 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 311 209 173 9 chr1 187091813 187091923 -95101741 + L1ME4a LINE L1 5954 6081 -40 201 277 178 0 chr1 187092336 187092437 -95101227 - MIR SINE MIR -122 140 22 510 217 98 35 chr1 187092880 187093023 -95100641 + L1MC/D LINE L1 5670 5821 -351 647 319 85 0 chr1 187093039 187093321 -95100343 + L2 LINE L2 2000 2305 -1009 1014 253 114 27 chr1 187093324 187093816 -95099848 - L2 LINE L2 -4 3309 2774 418 297 34 8 chr1 187094588 187094706 -95098958 - MIR SINE MIR -68 140 20 207 0 0 0 chr1 187095045 187095068 -95098596 + (A)n Simple_repeat Simple_repeat 1 23 0 720 138 46 23 chr1 187095095 187095225 -95098439 - FLAM_C SINE Alu 0 133 1 349 284 180 18 chr1 187095947 187096169 -95097495 - MIR SINE MIR 0 262 5 232 377 101 42 chr1 187096476 187096784 -95096880 - L2 LINE L2 -5 3267 2942 199 350 50 10 chr1 187097787 187097887 -95095777 - L2 LINE L2 -2 3311 3208 186 222 56 0 chr1 187097932 187097986 -95095678 - MIR SINE MIR -120 142 86 469 231 88 52 chr1 187098270 187098521 -95095143 + MIR SINE MIR 2 261 -1 595 263 34 29 chr1 187098740 187098949 -95094715 - MIR SINE MIR -48 214 5 1829 179 3 3 chr1 187099666 187099962 -95093702 - AluJb SINE Alu -16 296 1 283 218 11 11 chr1 187100468 187100555 -95093109 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 408 291 64 12 chr1 187100765 187100937 -95092727 + MIR SINE MIR 9 189 -73 189 343 29 10 chr1 187100993 187101095 -95092569 - MIR SINE MIR -77 185 82 2041 100 0 0 chr1 187102693 187102944 -95090720 + AluSg SINE Alu 1 251 -59 1035 98 0 28 chr1 187102944 187103087 -95090577 + AluSq SINE Alu 119 257 -56 256 330 0 10 chr1 187103146 187103243 -95090421 - MIR3 SINE MIR -32 176 81 203 191 85 0 chr1 187104372 187104419 -95089245 - L2 LINE L2 -5 3267 3217 417 277 27 11 chr1 187106466 187106633 -95087031 + MIR SINE MIR 7 174 -62 486 233 128 0 chr1 187107546 187107679 -95085985 + MER96 DNA MER1_type? 1 150 -25 230 344 75 0 chr1 187108551 187108644 -95085020 - MIR SINE MIR -162 100 1 285 214 0 50 chr1 187108958 187109140 -95084524 + (CATA)n Simple_repeat Simple_repeat 1 173 0 240 132 0 94 chr1 187109704 187109757 -95083907 - L2 LINE L2 -1 3312 3265 621 297 29 24 chr1 187109971 187110217 -95083447 + MIR SINE MIR 2 248 -14 904 200 51 0 chr1 187111717 187111912 -95081752 + MER3 DNA MER1_type 5 209 0 357 333 72 7 chr1 187112201 187112354 -95081310 + MIR3 SINE MIR 21 183 -25 186 43 0 0 chr1 187113367 187113390 -95080274 + (A)n Simple_repeat Simple_repeat 1 23 0 184 283 19 0 chr1 187113748 187113801 -95079863 + L3 LINE CR1 1420 1473 -104 251 300 177 31 chr1 187114104 187114234 -95079430 + L2 LINE L2 3165 3313 0 * 515 347 138 27 chr1 187114228 187115076 -95078588 - L2 LINE L2 -811 2503 1562 459 318 92 9 chr1 187115386 187115603 -95078061 + MIR SINE MIR 28 262 0 1358 186 62 15 chr1 187115820 187116121 -95077543 - AluSx SINE Alu 0 314 1 1113 269 135 28 chr1 187116386 187117211 -95076453 - L2 LINE L2 -3 3310 2412 858 210 83 5 chr1 187117875 187118080 -95075584 - MER58A DNA MER1_type 0 224 4 281 129 271 29 chr1 187118426 187118496 -95075168 - L2 LINE L2 -19 3294 3208 234 250 169 52 chr1 187118870 187119006 -95074658 - L2 LINE L2 -4 3309 3158 277 271 0 0 chr1 187119717 187119787 -95073877 - MER91B DNA MER1_type -118 72 3 220 292 58 50 chr1 187119841 187119961 -95073703 + MIR SINE MIR 122 242 -20 1564 234 62 74 chr1 187120067 187120497 -95073167 + L1MEc LINE L1 2153 2587 -3628 2428 88 0 0 chr1 187120497 187120792 -95072872 + AluSq SINE Alu 1 295 -18 1564 234 62 74 chr1 187120792 187121006 -95072658 + L1MEc LINE L1 2587 2750 -3465 3465 170 22 3 chr1 187121006 187121600 -95072064 - MER6A DNA MER2_type 0 605 1 1564 234 62 74 chr1 187121600 187121792 -95071872 + L1MEc LINE L1 2750 2943 -3272 432 253 136 0 chr1 187123555 187123709 -95069955 + MIR SINE MIR 88 262 0 349 295 53 33 chr1 187123910 187124085 -95069579 - MIR SINE MIR -71 191 16 621 186 174 0 chr1 187124638 187124799 -95068865 - MER5A DNA MER1_type 0 189 1 241 294 138 0 chr1 187125694 187125803 -95067861 - MIR SINE MIR -76 186 63 288 257 147 18 chr1 187126013 187126122 -95067542 - MIR SINE MIR -139 123 1 243 236 56 14 chr1 187126427 187126499 -95067165 + MIR SINE MIR 23 97 -111 407 238 38 0 chr1 187126661 187126766 -95066898 + MIR SINE MIR 85 193 -69 1244 159 51 23 chr1 187126787 187127044 -95066620 - L1MD3 LINE L1 -2 7993 7730 464 193 77 161 chr1 187127056 187127341 -95066323 - MIR SINE MIR -1 261 1 453 311 83 80 chr1 187127451 187127911 -95065753 - L2 LINE L2 -8 3264 2804 413 244 47 48 chr1 187127926 187128181 -95065483 - MLT1I LTR MaLR 0 409 123 421 312 23 93 chr1 187128288 187128676 -95064988 - L2 LINE L2 -560 2754 2394 645 269 101 16 chr1 187128736 187128993 -95064671 + HAL1 LINE L1 2228 2506 -1 218 337 63 11 chr1 187129168 187129263 -95064401 - L2 LINE L2 -197 3075 2976 259 302 35 23 chr1 187129476 187129562 -95064102 + MER5A DNA MER1_type 101 187 -2 458 279 37 0 chr1 187129802 187129938 -95063726 + MIR3 SINE MIR 54 194 -14 834 292 74 25 chr1 187129955 187130400 -95063264 + L1ME LINE L1 5258 5724 -397 2374 92 0 13 chr1 187130468 187130783 -95062881 + AluY SINE Alu 1 311 0 621 214 20 89 chr1 187130881 187131129 -95062535 + L2 LINE L2 2733 2963 -351 305 308 10 10 chr1 187131276 187131380 -95062284 + L2 LINE L2 3183 3286 -27 221 315 34 60 chr1 187131863 187132012 -95061652 - MIR3 SINE MIR -62 146 2 2426 78 7 0 chr1 187132472 187132778 -95060886 + AluSq SINE Alu 1 308 -5 194 275 101 56 chr1 187133172 187133350 -95060314 + MIR SINE MIR 71 256 -6 267 359 28 9 chr1 187133444 187133550 -95060114 + MIR3 SINE MIR 77 184 -24 2299 105 6 10 chr1 187133556 187133870 -95059794 - AluSq SINE Alu 0 313 1 772 346 137 17 chr1 187134150 187134976 -95058688 - L2 LINE L2 -205 3067 2128 296 251 101 78 chr1 187135294 187135513 -95058151 + MLT1I LTR MaLR 101 376 -74 1587 186 17 14 chr1 187135513 187135808 -95057856 - AluJo SINE Alu -11 301 6 296 251 101 78 chr1 187135808 187135885 -95057779 + MLT1I LTR MaLR 376 450 0 352 293 136 26 chr1 187135972 187136163 -95057501 - MIR SINE MIR -27 235 24 413 299 52 11 chr1 187136753 187136927 -95056737 + MIR SINE MIR 11 191 -71 182 211 154 0 chr1 187137176 187137228 -95056436 - MIR SINE MIR -111 151 92 3795 200 51 17 chr1 187137399 187139073 -95054591 + L1MB8 LINE L1 4439 6172 -6 322 263 26 121 chr1 187139624 187139814 -95053850 - MER5B DNA MER1_type -4 174 3 187 103 0 0 chr1 187140464 187140493 -95053171 - MIR SINE MIR -110 152 124 1141 82 82 0 chr1 187140513 187140671 -95052993 + AluSg/x SINE Alu 127 297 -13 206 250 183 0 chr1 187140673 187140733 -95052931 - MIR SINE MIR -164 98 28 320 207 0 23 chr1 187141576 187141663 -95052001 + GA-rich Low_complexity Low_complexity 4 88 0 306 223 194 43 chr1 187142009 187142148 -95051516 + MIR SINE MIR 25 184 -78 874 224 48 0 chr1 187142219 187142384 -95051280 + FAM SINE Alu 3 175 0 613 181 15 0 chr1 187143877 187144010 -95049654 + (TA)n Simple_repeat Simple_repeat 2 136 0 225 173 0 58 chr1 187144010 187144062 -95049602 + L1MCa LINE L1 2016 2064 -4362 466 217 0 28 chr1 187144072 187144215 -95049449 + (TATG)n Simple_repeat Simple_repeat 2 140 0 239 296 23 0 chr1 187144217 187144305 -95049359 + L1MC4 LINE L1 6614 6703 -1339 259 279 47 0 chr1 187144331 187144417 -95049247 + L1MC4 LINE L1 6614 6703 -1339 226 161 0 71 chr1 187144487 187144543 -95049121 - L1MC4 LINE L1 -1339 6703 6652 * 252 292 0 0 chr1 187144508 187144597 -95049067 + L1MC4 LINE L1 6615 6703 -1339 235 303 0 0 chr1 187144568 187144657 -95049007 + L1MC4 LINE L1 6615 6703 -1339 * 241 245 0 43 chr1 187144667 187144761 -95048903 - L1MC4 LINE L1 -1339 6703 6614 * 265 258 45 0 chr1 187144683 187144772 -95048892 + L1MC4 LINE L1 6614 6706 -1336 220 192 39 0 chr1 187144781 187144833 -95048831 + (TA)n Simple_repeat Simple_repeat 2 55 0 453 267 148 24 chr1 187144897 187145107 -95048557 + MARNA DNA Mariner 177 412 -174 213 267 86 43 chr1 187145451 187145567 -95048097 - MIR SINE MIR -2 260 140 280 244 56 22 chr1 187145643 187145733 -95047931 - MIR SINE MIR -65 197 105 267 246 77 101 chr1 187145830 187145986 -95047678 + MLT1K LTR MaLR 387 538 -50 1681 154 133 9 chr1 187145986 187146310 -95047354 + MLT1A1 LTR MaLR 2 365 0 267 246 77 101 chr1 187146310 187146360 -95047304 + MLT1K LTR MaLR 538 588 0 332 282 0 29 chr1 187146374 187146477 -95047187 - MARNA DNA Mariner -12 574 475 420 251 114 12 chr1 187147958 187148125 -95045539 + MIR SINE MIR 20 203 -59 255 362 67 3 chr1 187151149 187151431 -95042233 + L2 LINE L2 1935 2234 -1080 415 261 237 29 chr1 187151441 187151648 -95042016 + MIR SINE MIR 13 262 0 245 333 52 105 chr1 187151931 187152397 -95041267 + L2 LINE L2 2807 3247 -25 2158 105 3 20 chr1 187152398 187152704 -95040960 - AluSp SINE Alu -12 301 1 222 224 0 15 chr1 187152969 187153068 -95040596 + (CACCC)n Simple_repeat Simple_repeat 1 97 0 1615 149 17 40 chr1 187153242 187153543 -95040121 + AluSx SINE Alu 12 305 -7 2268 102 3 13 chr1 187153732 187154035 -95039629 - AluSx SINE Alu -12 300 1 351 312 12 77 chr1 187154047 187154217 -95039447 - MIR3 SINE MIR -19 189 31 2224 41 7 51 chr1 187154455 187154783 -95038881 + AluY SINE Alu 1 315 0 1743 165 10 3 chr1 187155016 187155307 -95038357 - AluJb SINE Alu -19 293 1 2376 85 0 3 chr1 187155320 187155613 -95038051 - AluSc SINE Alu -17 292 1 239 328 0 0 chr1 187155711 187155778 -95037886 - L2 LINE L2 0 3272 3206 22 0 0 0 chr1 187156015 187156037 -95037627 + AT_rich Low_complexity Low_complexity 1 22 0 229 211 0 0 chr1 187156778 187156830 -95036834 + A-rich Low_complexity Low_complexity 1 52 0 261 0 0 0 chr1 187156891 187156920 -95036744 + (TC)n Simple_repeat Simple_repeat 2 30 0 1476 139 13 4 chr1 187156969 187157207 -95036457 + L1MC1 LINE L1 6093 6332 -1 441 225 63 21 chr1 187157409 187157551 -95036113 - MIR SINE MIR 0 262 115 1618 107 144 15 chr1 187157764 187158034 -95035630 + AluSg1 SINE Alu 1 305 -4 297 261 0 11 chr1 187158260 187158348 -95035316 - HY3 scRNA scRNA -14 87 1 1610 164 29 7 chr1 187160994 187161295 -95032369 + AluJo SINE Alu 1 307 0 2176 104 3 39 chr1 187161299 187161607 -95032057 + AluSx SINE Alu 1 297 -15 968 242 20 16 chr1 187161648 187161896 -95031768 + L1M4 LINE L1 3999 4247 -1899 900 254 18 4 chr1 187162088 187162316 -95031348 + MIR SINE MIR 12 242 -20 2067 132 0 0 chr1 187162318 187162619 -95031045 + AluSx SINE Alu 1 301 0 457 190 30 10 chr1 187163297 187163397 -95030267 + MER5A DNA MER1_type 1 102 -87 36 40 0 0 chr1 187166511 187166561 -95027103 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 187166585 187166607 -95027057 + AT_rich Low_complexity Low_complexity 1 22 0 810 197 73 43 chr1 187167280 187167514 -95026150 + MIR SINE MIR 1 241 -21 294 299 28 35 chr1 187167547 187167691 -95025973 + L2 LINE L2 2841 2983 -330 201 121 0 0 chr1 187167808 187167841 -95025823 + (TC)n Simple_repeat Simple_repeat 1 33 0 705 202 0 0 chr1 187169288 187169407 -95024257 - FLAM_A SINE Alu -14 119 1 432 172 11 0 chr1 187169418 187169505 -95024159 - L1MA6 LINE L1 -1 6299 6212 2046 112 11 7 chr1 187169521 187169808 -95023856 + AluSx SINE Alu 1 288 -24 1062 156 229 98 chr1 187169908 187170137 -95023527 + MER34 LTR ERV1 138 336 -206 2388 103 0 0 chr1 187170137 187170448 -95023216 + AluSx SINE Alu 2 312 0 1062 156 229 98 chr1 187170448 187170576 -95023088 + MER34 LTR ERV1 336 542 0 421 270 26 0 chr1 187170583 187170698 -95022966 - L1ME LINE L1 -442 5679 5562 2280 99 0 16 chr1 187170705 187171017 -95022647 + AluSx SINE Alu 1 307 -5 276 260 0 0 chr1 187171060 187171133 -95022531 - L1ME2 LINE L1 -10 6154 6082 1629 245 66 56 chr1 187171161 187171809 -95021855 - HAL1 LINE L1 -355 2152 1498 199 339 0 0 chr1 187171837 187171893 -95021771 - L2 LINE L2 -16 3297 3242 1491 108 5 14 chr1 187172166 187172388 -95021276 + L1PB2 LINE L1 5932 6151 0 512 287 39 0 chr1 187172525 187172706 -95020958 - MLT1J LTR MaLR 0 511 324 406 296 14 0 chr1 187172938 187173080 -95020584 - MER103 DNA DNA -12 154 11 199 346 51 32 chr1 187173115 187173271 -95020393 - L2 LINE L2 -1337 1977 1819 387 174 0 0 chr1 187173587 187173673 -95019991 + CT-rich Low_complexity Low_complexity 2 87 0 1634 89 27 18 chr1 187174257 187174481 -95019183 + AluSg/x SINE Alu 85 310 -2 200 367 220 3 chr1 187175598 187175884 -95017780 - L2 LINE L2 -1904 1410 1063 2223 112 7 3 chr1 187175931 187176236 -95017428 + AluSq SINE Alu 1 306 -7 204 342 0 0 chr1 187176335 187176411 -95017253 - L2 LINE L2 -2519 795 720 238 288 38 12 chr1 187176442 187176522 -95017142 + MIR SINE MIR 53 134 -128 2255 124 0 0 chr1 187176585 187176891 -95016773 + AluSx SINE Alu 1 306 -6 702 211 0 0 chr1 187177014 187177142 -95016522 + FLAM_A SINE Alu 1 128 -5 3403 228 58 97 chr1 187177347 187177697 -95015967 + L1MEc LINE L1 35 397 -5999 2246 115 6 14 chr1 187177697 187178045 -95015619 - L1MA9 LINE L1 -5 6307 5963 3403 228 58 97 chr1 187178045 187178331 -95015333 + L1MEc LINE L1 397 693 -5703 306 125 0 0 chr1 187178331 187178430 -95015234 + Alu SINE Alu 236 334 0 3403 228 58 97 chr1 187178430 187179067 -95014597 + L1MEc LINE L1 693 1353 -5043 788 172 0 15 chr1 187179067 187179201 -95014463 + FLAM_C SINE Alu 1 132 -1 3403 228 58 97 chr1 187179201 187179308 -95014356 + L1MEc LINE L1 1353 1408 -4988 2261 113 0 10 chr1 187179308 187179617 -95014047 + AluSx SINE Alu 1 306 -6 3403 228 58 97 chr1 187179617 187179668 -95013996 + L1MEc LINE L1 1408 1459 -4937 2278 110 0 0 chr1 187179829 187180120 -95013544 + AluSg SINE Alu 1 291 -19 2122 119 0 3 chr1 187180132 187180427 -95013237 + AluSx SINE Alu 1 294 -18 610 268 147 22 chr1 187181178 187181409 -95012255 - MLT1J1 LTR MaLR -110 336 77 2497 170 29 4 chr1 187181473 187181926 -95011738 - MLT2C2 LTR ERVL 0 464 1 2427 108 0 0 chr1 187182152 187182458 -95011206 - AluSx SINE Alu -6 306 1 1955 155 0 7 chr1 187183105 187183408 -95010256 - AluJb SINE Alu -11 301 1 398 115 82 0 chr1 187183921 187183982 -95009682 - Alu SINE Alu -3 298 233 225 206 9 122 chr1 187184321 187184428 -95009236 - MIR SINE MIR -55 207 113 202 241 38 51 chr1 187184470 187184549 -95009115 + L2 LINE L2 3194 3271 -1 583 171 299 16 chr1 187184841 187185028 -95008636 - MER112 DNA MER1_type -20 240 1 2588 71 0 0 chr1 187185227 187185538 -95008126 + AluY SINE Alu 1 311 0 354 266 89 39 chr1 187185976 187186132 -95007532 + MIR SINE MIR 12 179 -83 209 218 109 0 chr1 187186853 187186908 -95006756 - MIR SINE MIR -110 152 92 954 131 0 29 chr1 187187091 187187228 -95006436 + FLAM_C SINE Alu 1 133 0 2340 91 0 3 chr1 187187297 187187595 -95006069 + AluSc SINE Alu 5 301 -8 706 215 0 0 chr1 187187741 187187904 -95005760 - AluSq SINE Alu -14 299 137 327 311 73 12 chr1 187188006 187188170 -95005494 + L1MEc LINE L1 1582 1755 -5070 847 172 0 15 chr1 187188171 187188305 -95005359 + FLAM_C SINE Alu 1 132 -1 240 321 0 12 chr1 187188321 187188405 -95005259 + L1MEc LINE L1 1592 1674 -4868 2216 110 3 10 chr1 187188412 187188720 -95004944 + AluSx SINE Alu 1 306 -6 2301 90 10 7 chr1 187188932 187189233 -95004431 + AluSg SINE Alu 1 302 -8 1633 228 126 88 chr1 187190023 187191274 -95002390 + L1MC5 LINE L1 6571 7773 -188 402 21 0 0 chr1 187191274 187191321 -95002343 + (TC)n Simple_repeat Simple_repeat 2 48 0 216 0 0 0 chr1 187191320 187191344 -95002320 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 1633 228 126 88 chr1 187191321 187191394 -95002270 + L1MC5 LINE L1 7773 7924 -37 24 0 0 0 chr1 187192166 187192190 -95001474 + AT_rich Low_complexity Low_complexity 1 24 0 226 225 63 54 chr1 187192598 187192709 -95000955 - L2 LINE L2 -20 3293 3182 712 255 28 33 chr1 187192748 187192960 -95000704 + MIR SINE MIR 5 215 -47 449 264 134 10 chr1 187193079 187193292 -95000372 - L1MEc LINE L1 -4286 1930 1514 34 0 0 0 chr1 187193568 187193602 -95000062 + AT_rich Low_complexity Low_complexity 1 34 0 2496 55 10 0 chr1 187194558 187194850 -94998814 - AluY SINE Alu -16 295 1 974 201 5 20 chr1 187194850 187195054 -94998610 - MLT2D LTR ERVL -213 201 1 246 309 0 12 chr1 187195056 187195137 -94998527 - L1M4 LINE L1 -1208 4938 4859 198 333 17 0 chr1 187195394 187195454 -94998210 - L2 LINE L2 -76 3196 3136 2017 109 4 0 chr1 187195573 187195847 -94997817 + AluSq SINE Alu 21 295 -18 470 217 45 64 chr1 187195869 187196026 -94997638 + L2 LINE L2 3160 3313 0 387 317 84 7 chr1 187196791 187196933 -94996731 + L2 LINE L2 3161 3313 0 828 291 32 12 chr1 187197256 187197507 -94996157 - MIR SINE MIR -1 261 6 238 206 206 10 chr1 187197664 187197761 -94995903 - L1ME4a LINE L1 -44 6077 5962 923 286 59 20 chr1 187197764 187198090 -94995574 - L1ME4a LINE L1 -193 5928 5583 1595 156 12 98 chr1 187198090 187198237 -94995427 + AluJo SINE Alu 1 106 -206 2009 133 7 7 chr1 187198237 187198545 -94995119 + AluSx SINE Alu 1 308 -4 1595 156 12 98 chr1 187198545 187198725 -94994939 + AluJo SINE Alu 106 300 -12 923 286 59 20 chr1 187198725 187198790 -94994874 - L1ME4a LINE L1 -538 5583 5522 6393 110 33 118 chr1 187198813 187199403 -94994261 - Tigger3b DNA MER2_type -1797 1231 813 2206 122 0 6 chr1 187199403 187199714 -94993950 - AluSx SINE Alu -3 309 1 6393 110 33 118 chr1 187199714 187200445 -94993219 - Tigger3b DNA MER2_type -2215 813 22 189 360 0 0 chr1 187201249 187201299 -94992365 - L2 LINE L2 -19 3294 3245 195 250 0 0 chr1 187202147 187202191 -94991473 + MIR SINE MIR 113 156 -106 917 172 278 4 chr1 187202380 187202607 -94991057 - AluJo SINE Alu -17 295 7 2359 98 0 0 chr1 187203027 187203322 -94990342 + AluSq SINE Alu 1 295 -18 271 250 38 25 chr1 187203469 187203549 -94990115 + MIR SINE MIR 34 114 -148 307 181 12 12 chr1 187203981 187204064 -94989600 + CT-rich Low_complexity Low_complexity 1 83 0 22 0 0 0 chr1 187204306 187204328 -94989336 + AT_rich Low_complexity Low_complexity 1 22 0 288 317 171 8 chr1 187205489 187205612 -94988052 + L3 LINE CR1 1416 1558 -19 2115 103 38 3 chr1 187206273 187206564 -94987100 + AluSx SINE Alu 1 301 -11 348 351 54 9 chr1 187206760 187206982 -94986682 - MIR SINE MIR -6 256 25 698 281 86 45 chr1 187207040 187207460 -94986204 - L2 LINE L2 -61 3252 2816 2082 145 0 0 chr1 187209064 187209360 -94984304 + AluJo SINE Alu 1 296 -16 740 225 135 31 chr1 187209475 187209697 -94983967 - MIR SINE MIR -14 248 4 1570 167 0 12 chr1 187210524 187210776 -94982888 + AluJo SINE Alu 47 295 -17 329 318 153 9 chr1 187210806 187211029 -94982635 + L3 LINE CR1 762 1016 -561 558 106 211 0 chr1 187211030 187211134 -94982530 - MER3 DNA MER1_type 0 209 84 203 259 86 17 chr1 187211144 187211202 -94982462 - MIR SINE MIR -194 68 7 2349 127 24 32 chr1 187211710 187211783 -94981881 + MER47A DNA MER2_type 1 73 -2250 2206 120 7 0 chr1 187211783 187212083 -94981581 + AluSx SINE Alu 1 302 -10 2349 127 24 32 chr1 187212083 187212378 -94981286 + MER47A DNA MER2_type 73 366 0 453 261 39 15 chr1 187212809 187212939 -94980725 + MIR SINE MIR 81 213 -49 815 177 140 16 chr1 187213159 187213345 -94980319 + MER3 DNA MER1_type 1 209 0 395 237 197 26 chr1 187213354 187213413 -94980251 + MER5B DNA MER1_type 1 49 -129 2233 96 0 52 chr1 187213413 187213737 -94979927 + AluSp SINE Alu 1 307 -6 395 237 197 26 chr1 187213737 187213829 -94979835 + MER5B DNA MER1_type 49 178 0 200 241 304 0 chr1 187213857 187213936 -94979728 - MER5A DNA MER1_type -21 168 66 1655 151 37 0 chr1 187213936 187214207 -94979457 - AluJo SINE Alu -18 294 14 1366 199 51 33 chr1 187214220 187214552 -94979112 + MLT1D LTR MaLR 168 505 0 1901 160 92 84 chr1 187214657 187215001 -94978663 - MER21A LTR ERV1 -11 912 572 1744 156 0 25 chr1 187215001 187215284 -94978380 + AluJb SINE Alu 1 276 -36 1901 160 92 84 chr1 187215284 187215926 -94977738 - MER21A LTR ERV1 -351 572 1 1617 108 22 30 chr1 187216082 187216314 -94977350 + MER30 DNA MER1_type 1 230 0 794 79 0 10 chr1 187217243 187217344 -94976320 - HY3 scRNA scRNA -1 100 1 329 307 74 62 chr1 187219432 187219608 -94974056 - MER5B DNA MER1_type 0 178 1 1445 183 44 12 chr1 187220002 187220341 -94973323 + L1ME4a LINE L1 4862 5211 -935 4705 139 24 7 chr1 187220341 187221088 -94972576 + L1MB7 LINE L1 5416 6175 -9 408 225 62 44 chr1 187221481 187221641 -94972023 + L1ME4a LINE L1 5677 5839 -282 849 158 116 0 chr1 187222128 187222292 -94971372 - AluJo SINE Alu -129 183 1 2423 167 62 0 chr1 187222847 187223248 -94970416 + MSTB LTR MaLR 1 426 0 25 0 0 0 chr1 187223292 187223317 -94970347 + AT_rich Low_complexity Low_complexity 1 25 0 535 283 82 40 chr1 187224597 187224815 -94968849 + L1MC/D LINE L1 4808 5015 -1389 1744 164 0 15 chr1 187224815 187225089 -94968575 + AluJb SINE Alu 5 274 -38 535 283 82 40 chr1 187225089 187225450 -94968214 + L1MC/D LINE L1 5015 5359 -1045 1768 169 7 3 chr1 187225450 187225734 -94967930 + AluSx SINE Alu 1 285 -27 180 111 0 0 chr1 187225737 187225764 -94967900 + (CAAA)n Simple_repeat Simple_repeat 3 29 0 535 283 82 40 chr1 187225764 187225888 -94967776 + L1MC/D LINE L1 5360 5546 -858 964 287 46 57 chr1 187226409 187227101 -94966563 + L1ME4a LINE L1 5290 5933 -188 4306 142 17 53 chr1 187226503 187226912 -94966752 + L1MB3 LINE L1 5391 5813 -370 238 48 0 48 chr1 187226912 187226954 -94966710 + (TG)n Simple_repeat Simple_repeat 2 41 0 4306 142 17 53 chr1 187226954 187227314 -94966350 + L1MB3 LINE L1 5813 6185 2 2043 170 0 0 chr1 187227314 187227626 -94966038 + AluJb SINE Alu 1 312 0 381 22 0 0 chr1 187227628 187227674 -94965990 + (CA)n Simple_repeat Simple_repeat 2 47 0 4306 142 17 53 chr1 187227674 187227723 -94965941 + L1MB3 LINE L1 6134 6183 0 1676 149 20 23 chr1 187227727 187228028 -94965636 + L1M2 LINE L1 5262 5561 -751 1126 60 40 0 chr1 187228028 187228177 -94965487 + MER41A LTR ERV1 400 554 0 627 152 0 0 chr1 187228177 187228269 -94965395 + MER41A-int LTR ERV1 1 92 -7664 * 1668 83 18 5 chr1 187228261 187228478 -94965186 + MER41B-int LTR ERV1 5725 5944 -2 3327 103 101 0 chr1 187228478 187228974 -94964690 + MER41B LTR ERV1 1 546 -89 225 0 0 0 chr1 187228974 187228999 -94964665 + (A)n Simple_repeat Simple_repeat 1 25 0 1354 144 51 13 chr1 187228999 187229063 -94964601 + L1M2 LINE L1 5544 5604 -708 2297 97 3 7 chr1 187229063 187229371 -94964293 + AluSx SINE Alu 1 307 -5 1354 144 51 13 chr1 187229371 187229542 -94964122 + L1M2 LINE L1 5604 5788 -524 2063 133 3 10 chr1 187229571 187229879 -94963785 + AluSx SINE Alu 2 307 -5 3563 187 32 65 chr1 187230039 187230938 -94962726 + L1MC4a LINE L1 5873 6742 -1066 1664 143 55 4 chr1 187231750 187232023 -94961641 + AluJb SINE Alu 1 287 -25 954 174 89 5 chr1 187232046 187232236 -94961428 + L1MC4 LINE L1 6807 7012 -1030 2427 99 0 0 chr1 187232236 187232539 -94961125 + AluY SINE Alu 1 303 -8 1183 115 0 35 chr1 187232539 187232713 -94960951 + AluSg/x SINE Alu 134 301 -11 2081 124 0 0 chr1 187232713 187233039 -94960625 + AluSg SINE Alu 1 326 0 4109 154 97 56 chr1 187233039 187234040 -94959624 + L1MC4 LINE L1 6252 8042 0 1279 174 5 5 chr1 187234473 187234691 -94958973 + AluJo SINE Alu 85 302 -10 2979 68 6 0 chr1 187235485 187235836 -94957828 - THE1A LTR MaLR -2 353 1 392 270 51 15 chr1 187235925 187236062 -94957602 - MIR SINE MIR -47 215 74 375 305 59 106 chr1 187236898 187237401 -94956263 + L2 LINE L2 2772 3297 25 2243 106 3 10 chr1 187237401 187237704 -94955960 - AluSp SINE Alu -12 301 1 1668 164 33 3 chr1 187237704 187237878 -94955786 - AluJb SINE Alu -4 308 141 1819 166 23 0 chr1 187237878 187238180 -94955484 - AluJb SINE Alu -3 309 1 432 0 0 0 chr1 187238181 187238229 -94955435 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1668 164 33 3 chr1 187238229 187238351 -94955313 - AluJb SINE Alu -170 142 1 375 305 59 106 chr1 187238351 187238377 -94955287 + L2 LINE L2 3294 3272 0 844 144 0 30 chr1 187239225 187239357 -94954307 - FLAM_A SINE Alu -5 128 1 221 311 48 62 chr1 187239885 187240094 -94953570 - MIR SINE MIR -17 245 40 1403 186 52 0 chr1 187240383 187240673 -94952991 + MER33 DNA MER1_type 20 324 0 24 0 0 0 chr1 187242320 187242344 -94951320 + AT_rich Low_complexity Low_complexity 1 24 0 319 118 39 0 chr1 187242358 187242409 -94951255 + MER116 DNA Mariner 2 54 -26 26 0 0 0 chr1 187242505 187242531 -94951133 + AT_rich Low_complexity Low_complexity 1 26 0 1391 110 10 24 chr1 187242668 187242877 -94950787 - AluSg/x SINE Alu -6 306 101 205 208 0 21 chr1 187243015 187243063 -94950601 + GA-rich Low_complexity Low_complexity 4 50 0 461 266 102 23 chr1 187243079 187243256 -94950408 + MARNA DNA Mariner 58 248 -338 586 122 0 0 chr1 187243282 187243356 -94950308 + tRNA-Lys-AAG tRNA tRNA 1 74 -2 1876 135 7 4 chr1 187243362 187243643 -94950021 + AluJb SINE Alu 29 310 -2 253 0 54 0 chr1 187244165 187244202 -94949462 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 2643 42 3 0 chr1 187245625 187245935 -94947729 - AluY SINE Alu 0 311 1 840 249 72 5 chr1 187246594 187246803 -94946861 + MIR SINE MIR 40 262 0 2325 103 0 3 chr1 187247662 187247972 -94945692 + AluSc SINE Alu 1 309 0 309 270 66 42 chr1 187248267 187248404 -94945260 + MIR SINE MIR 30 173 -61 1725 144 3 43 chr1 187248479 187248778 -94944886 + AluJo SINE Alu 1 287 -25 248 208 75 0 chr1 187248786 187248839 -94944825 + L3b LINE CR1 1519 1575 -8 2046 138 0 3 chr1 187249066 187249357 -94944307 + AluSx SINE Alu 1 290 -22 2271 154 43 5 chr1 187249970 187250346 -94943318 + MLT1B LTR MaLR 1 390 0 269 307 101 28 chr1 187250610 187250789 -94942875 - L2 LINE L2 -189 3083 2892 2979 68 6 0 chr1 187251690 187252041 -94941623 - THE1A LTR MaLR -2 353 1 392 270 51 15 chr1 187252130 187252267 -94941397 - MIR SINE MIR -47 215 74 27 73 0 0 chr1 187252688 187252743 -94940921 + AT_rich Low_complexity Low_complexity 1 55 0 613 242 136 10 chr1 187253597 187253795 -94939869 - MIR SINE MIR -37 225 3 333 294 32 63 chr1 187256173 187256299 -94937365 + MIR SINE MIR 45 166 -96 190 370 24 24 chr1 187256590 187256717 -94936947 - L2 LINE L2 -552 2762 2636 3951 229 99 64 chr1 187256947 187258561 -94935103 + L1MEc LINE L1 43 1713 -4683 2160 90 0 0 chr1 187258565 187258833 -94934831 + AluSx SINE Alu 1 268 -44 862 222 113 16 chr1 187259524 187259781 -94933883 + L1MC4a LINE L1 6542 6823 -985 1029 91 13 13 chr1 187259803 187259957 -94933707 - LTR13 LTR ERVK 0 1007 854 * 1458 190 54 65 chr1 187259952 187260643 -94933021 - LTR13 LTR ERVK -270 737 1 2130 194 61 67 chr1 187260643 187261051 -94932613 + L1MC5 LINE L1 6840 7244 -717 359 71 0 18 chr1 187261051 187261107 -94932557 + (CA)n Simple_repeat Simple_repeat 2 56 0 2130 194 61 67 chr1 187261107 187261389 -94932275 + L1MC5 LINE L1 7244 7526 -435 1393 106 0 5 chr1 187261585 187261773 -94931891 - AluSq SINE Alu -13 300 114 338 71 0 0 chr1 187261773 187261815 -94931849 - AluSq SINE Alu -131 172 131 744 172 0 23 chr1 187261818 187261946 -94931718 - AluJo/FLAM SINE Alu -177 125 1 1313 192 44 4 chr1 187262178 187262428 -94931236 + AluJo SINE Alu 34 293 -19 1403 169 7 26 chr1 187262436 187262708 -94930956 + L1MA9 LINE L1 6046 6312 0 1697 136 0 29 chr1 187262766 187263039 -94930625 + AluJo SINE Alu 31 295 -17 983 151 13 0 chr1 187263043 187263195 -94930469 + AluJb SINE Alu 153 306 -6 1126 198 152 19 chr1 187263211 187263474 -94930190 + AluY SINE Alu 14 311 0 22 0 0 0 chr1 187263474 187263496 -94930168 + AT_rich Low_complexity Low_complexity 1 22 0 231 172 97 108 chr1 187263594 187263687 -94929977 - MER112 DNA MER1_type -137 123 32 23 0 0 0 chr1 187264206 187264229 -94929435 + AT_rich Low_complexity Low_complexity 1 23 0 1676 145 12 92 chr1 187264621 187264959 -94928705 - AluJb SINE Alu -1 311 1 233 333 0 0 chr1 187264961 187265015 -94928649 + L2 LINE L2 3122 3175 -97 346 263 15 75 chr1 187265068 187265201 -94928463 + HAL1b LINE L1 730 854 -494 2304 100 3 7 chr1 187265272 187265582 -94928082 + AluSq SINE Alu 1 309 -4 358 309 39 49 chr1 187265621 187265825 -94927839 + HAL1 LINE L1 2190 2391 -116 1420 160 89 22 chr1 187266730 187266999 -94926665 + AluJo SINE Alu 2 288 -24 392 265 123 51 chr1 187267225 187267637 -94926027 + L1MC/D LINE L1 5210 5671 -811 1966 173 23 11 chr1 187267637 187267989 -94925675 + L1PA16 LINE L1 5806 6161 -5 392 265 123 51 chr1 187267989 187268051 -94925613 + L1MC/D LINE L1 5671 5727 -755 431 259 150 81 chr1 187268297 187268609 -94925055 + L1MC/D LINE L1 5309 5661 -2147 1966 173 23 11 chr1 187268609 187268961 -94924703 + L1PA16 LINE L1 5806 6161 -5 431 259 150 81 chr1 187268961 187269081 -94924583 + L1MC/D LINE L1 5661 5771 -2037 6126 121 14 32 chr1 187269085 187270294 -94923370 - L1PB1 LINE L1 -1 6150 4956 818 129 0 0 chr1 187270294 187270410 -94923254 + AluSg/x SINE Alu 179 294 -18 797 306 171 8 chr1 187270880 187271369 -94922295 - L2 LINE L2 -1 3312 2739 182 114 0 29 chr1 187271638 187271673 -94921991 + (TC)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr1 187271690 187271715 -94921949 + (CA)n Simple_repeat Simple_repeat 1 25 0 982 177 30 39 chr1 187271928 187272021 -94921643 - MER20 DNA MER1_type 0 219 127 2023 211 6 0 chr1 187272021 187272382 -94921282 + MLT1A1 LTR MaLR 3 365 0 982 177 30 39 chr1 187272382 187272491 -94921173 - MER20 DNA MER1_type -92 127 19 7948 21 0 0 chr1 187273058 187273921 -94919743 + L1PA4 LINE L1 5290 6152 -3 509 209 0 15 chr1 187274222 187274356 -94919308 + CT-rich Low_complexity Low_complexity 4 135 0 524 256 94 30 chr1 187274383 187274586 -94919078 - L2 LINE L2 -1 3312 3097 739 232 7 0 chr1 187274646 187274788 -94918876 + MER45A DNA AcHobo 36 178 0 2364 276 123 7 chr1 187274802 187275617 -94918047 - L2 LINE L2 -338 2976 2068 198 0 0 0 chr1 187275830 187275852 -94917812 + (ATG)n Simple_repeat Simple_repeat 2 23 0 479 240 39 0 chr1 187275888 187275992 -94917672 + MER81 DNA DNA 2 109 -5 207 0 0 0 chr1 187276091 187276114 -94917550 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 183 156 0 89 chr1 187276121 187276166 -94917498 + L2 LINE L2 3254 3294 -19 * 209 128 0 85 chr1 187276132 187276179 -94917485 + MIR SINE MIR 220 262 0 2079 120 0 17 chr1 187276251 187276551 -94917113 + AluSx SINE Alu 1 295 -17 314 143 16 0 chr1 187277068 187277131 -94916533 + GA-rich Low_complexity Low_complexity 1 64 0 180 176 0 0 chr1 187277149 187277183 -94916481 + CT-rich Low_complexity Low_complexity 1 34 0 4323 224 91 38 chr1 187277633 187278660 -94915004 - L1MC4 LINE L1 -295 7747 6643 333 0 0 0 chr1 187278660 187278697 -94914967 + (CA)n Simple_repeat Simple_repeat 2 38 0 4323 224 91 38 chr1 187278697 187278902 -94914762 - L1MC4 LINE L1 -1399 6643 6450 271 293 0 0 chr1 187279190 187279265 -94914399 + L1M4 LINE L1 4799 4873 -1273 310 92 10 245 chr1 187279705 187279742 -94913922 + MSTD LTR MaLR 320 322 -74 2180 122 7 0 chr1 187279742 187280045 -94913619 + AluSx SINE Alu 1 305 -7 310 92 10 245 chr1 187280045 187280105 -94913559 + MSTD LTR MaLR 322 394 -2 206 244 22 0 chr1 187280173 187280218 -94913446 + L2 LINE L2 3222 3267 -5 1765 164 0 27 chr1 187280412 187280711 -94912953 + AluJb SINE Alu 1 291 -21 337 252 25 50 chr1 187280865 187280984 -94912680 - MIR SINE MIR -78 184 69 367 286 49 108 chr1 187281340 187281373 -94912291 - L2 LINE L2 0 3313 3280 3252 50 76 19 chr1 187281373 187281793 -94911871 + MLT2A1 LTR ERVL 1 444 0 367 286 49 108 chr1 187281793 187282046 -94911618 - L2 LINE L2 -33 3280 3044 822 222 35 53 chr1 187282691 187282975 -94910689 - LTR4 LTR ERV1 0 596 318 578 254 24 49 chr1 187283152 187283357 -94910307 - LTR4 LTR ERV1 -396 200 1 212 253 101 30 chr1 187283395 187283494 -94910170 - MIR SINE MIR -37 225 120 251 299 175 11 chr1 187283564 187283741 -94909923 + L1ME LINE L1 5621 5826 -295 200 111 0 28 chr1 187283879 187283915 -94909749 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 215 59 0 29 chr1 187284504 187284538 -94909126 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 1621 173 0 11 chr1 187284577 187284861 -94908803 + AluJb SINE Alu 29 309 -3 564 250 50 6 chr1 187284861 187285021 -94908643 + L1MEc LINE L1 1709 1875 -4521 1222 124 79 20 chr1 187285037 187285239 -94908425 + AluJb SINE Alu 85 298 -14 23 0 0 0 chr1 187285680 187285703 -94907961 + AT_rich Low_complexity Low_complexity 1 23 0 279 197 221 74 chr1 187285718 187285840 -94907824 + LTR40a LTR ERVL 2 141 -378 306 249 38 115 chr1 187286053 187286169 -94907495 + LTR40b LTR ERVL 196 291 -171 2296 119 0 0 chr1 187286169 187286481 -94907183 + AluSx SINE Alu 1 312 0 306 249 38 115 chr1 187286481 187286573 -94907091 + LTR40b LTR ERVL 291 388 -74 254 179 85 0 chr1 187286573 187286679 -94906985 + (TA)n Simple_repeat Simple_repeat 1 115 0 253 109 36 0 chr1 187286687 187286742 -94906922 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 237 143 24 0 chr1 187286770 187286812 -94906852 + LTR40a LTR ERVL 476 518 -1 6685 137 24 26 chr1 187286969 187288156 -94905508 + L1P3 LINE L1 10 1554 -4907 15226 51 5 0 chr1 187288151 187290743 -94902921 + L1PA6 LINE L1 3542 6154 0 437 206 0 0 chr1 187290831 187290904 -94902760 - tRNA-Val-GTT tRNA tRNA -3 73 1 274 85 0 0 chr1 187290962 187291009 -94902655 - L1MA8 LINE L1 -2 6289 6243 2412 97 3 0 chr1 187291193 187291503 -94902161 + AluSx SINE Alu 1 311 -1 2234 94 0 10 chr1 187292006 187292305 -94901359 - AluSc SINE Alu -4 305 10 2313 116 0 0 chr1 187292360 187292670 -94900994 - AluSq SINE Alu -3 310 1 241 245 19 0 chr1 187293678 187293731 -94899933 + L2 LINE L2 3192 3245 -27 1405 186 33 4 chr1 187293735 187294010 -94899654 + L1MA9 LINE L1 6025 6307 -5 1910 126 0 7 chr1 187294265 187294589 -94899075 + AluJb SINE Alu 1 322 0 31 44 0 0 chr1 187295110 187295155 -94898509 + GC_rich Low_complexity Low_complexity 1 45 0 1215 144 35 70 chr1 187295595 187295689 -94897975 + AluJo SINE Alu 47 143 -169 2228 83 24 0 chr1 187295689 187295977 -94897687 + AluSq SINE Alu 1 295 -18 1215 144 35 70 chr1 187295977 187296139 -94897525 + AluJo SINE Alu 143 294 -18 1580 165 25 7 chr1 187296920 187297205 -94896459 + AluJo SINE Alu 1 290 -22 24 41 0 20 chr1 187297266 187297285 -94896379 + AT_rich Low_complexity Low_complexity 1 19 -29 1245 59 33 0 chr1 187297285 187297438 -94896226 - L1PA13 LINE L1 -6 6157 6000 24 41 0 20 chr1 187297438 187297467 -94896197 + AT_rich Low_complexity Low_complexity 19 48 0 295 238 83 12 chr1 187297620 187297704 -94895960 - MIR SINE MIR -81 181 92 1828 137 6 40 chr1 187298406 187298728 -94894936 + AluSx SINE Alu 2 312 0 227 111 22 67 chr1 187299056 187299101 -94894563 + L2 LINE L2 3266 3308 -5 1155 201 27 51 chr1 187299584 187299877 -94893787 - AluJo SINE Alu -18 294 9 736 125 0 117 chr1 187299941 187300069 -94893595 + FLAM_A SINE Alu 13 125 -17 1737 188 0 19 chr1 187300097 187300405 -94893259 + AluJb SINE Alu 1 302 -10 267 130 109 0 chr1 187300409 187300455 -94893209 + MER34 LTR ERV1 34 84 -458 876 152 0 0 chr1 187300455 187300587 -94893077 + AluJb SINE Alu 176 307 -5 260 109 0 43 chr1 187300587 187300633 -94893031 + MER34 LTR ERV1 80 123 -419 189 0 0 0 chr1 187300634 187300655 -94893009 + (T)n Simple_repeat Simple_repeat 1 21 0 249 306 0 0 chr1 187300792 187300911 -94892753 + L1MC4 LINE L1 6615 6703 -1339 227 291 47 0 chr1 187300841 187300927 -94892737 - L1MC4 LINE L1 -1339 6703 6614 * 265 258 45 0 chr1 187300938 187301027 -94892637 + L1MC4 LINE L1 6614 6706 -1336 220 192 39 0 chr1 187301036 187301088 -94892576 + (TA)n Simple_repeat Simple_repeat 2 55 0 419 276 148 24 chr1 187301152 187301362 -94892302 + MARNA DNA Mariner 177 412 -174 244 259 122 38 chr1 187301705 187301836 -94891828 - MIR SINE MIR -2 260 119 303 244 56 22 chr1 187301897 187301987 -94891677 - MIR SINE MIR -65 197 105 276 246 77 101 chr1 187302084 187302240 -94891424 + MLT1K LTR MaLR 387 538 -50 1796 154 133 9 chr1 187302240 187302564 -94891100 + MLT1A1 LTR MaLR 2 365 0 276 246 77 101 chr1 187302564 187302614 -94891050 + MLT1K LTR MaLR 538 588 0 339 282 0 29 chr1 187302628 187302731 -94890933 - MARNA DNA Mariner -12 574 475 472 251 114 12 chr1 187304213 187304380 -94889284 + MIR SINE MIR 20 203 -59 255 188 21 0 chr1 187306476 187306524 -94887140 - Alu SINE Alu -253 50 2 2356 85 0 3 chr1 187306538 187306831 -94886833 - AluSc SINE Alu -17 292 1 261 328 0 0 chr1 187306929 187306996 -94886668 - L2 LINE L2 0 3272 3206 22 0 0 0 chr1 187307233 187307255 -94886409 + AT_rich Low_complexity Low_complexity 1 22 0 229 211 0 0 chr1 187307998 187308050 -94885614 + A-rich Low_complexity Low_complexity 1 52 0 261 0 0 0 chr1 187308111 187308140 -94885524 + (TC)n Simple_repeat Simple_repeat 2 30 0 1604 138 8 4 chr1 187308189 187308428 -94885236 + L1MC1 LINE L1 6093 6332 -1 482 225 63 21 chr1 187308630 187308772 -94884892 - MIR SINE MIR 0 262 115 1549 107 148 19 chr1 187308987 187309257 -94884407 + AluSg1 SINE Alu 1 305 -4 428 277 43 86 chr1 187360588 187360866 -94832798 - Charlie8 DNA MER1_type -1001 1416 64 2213 82 17 3 chr1 187360989 187361283 -94832381 - AluSq SINE Alu -15 298 1 249 241 19 0 chr1 187361410 187361464 -94832200 - L2 LINE L2 -9 3304 3250 387 263 193 56 chr1 187361712 187361904 -94831760 + MIR SINE MIR 12 231 -31 776 177 73 0 chr1 187361904 187362068 -94831596 - MER104 DNA MER2_type -1 179 4 387 263 193 56 chr1 187362068 187362085 -94831579 + MIR SINE MIR 231 244 -18 2624 48 0 3 chr1 187362191 187362500 -94831164 + AluY SINE Alu 1 308 -3 791 161 0 15 chr1 187362865 187362995 -94830669 - FLAM_C SINE Alu -5 128 1 243 235 0 0 chr1 187363137 187363235 -94830429 + C-rich Low_complexity Low_complexity 1 98 0 417 227 23 61 chr1 187363295 187363427 -94830237 - FLAM_C SINE Alu -6 127 1 2217 116 0 7 chr1 187363441 187363751 -94829913 - AluSx SINE Alu -4 308 1 285 344 38 15 chr1 187363863 187363994 -94829670 + MIR SINE MIR 52 185 -77 514 298 62 14 chr1 187363994 187364202 -94829462 + MIR SINE MIR 9 226 -36 313 323 123 44 chr1 187364213 187364554 -94829110 + L2 LINE L2 2343 2710 -604 26 74 0 0 chr1 187364767 187364821 -94828843 + AT_rich Low_complexity Low_complexity 1 54 0 1306 188 9 94 chr1 187364916 187365235 -94828429 - AluJo SINE Alu -20 292 1 287 313 0 12 chr1 187365262 187365345 -94828319 + L2 LINE L2 3232 3313 0 2182 122 10 0 chr1 187365606 187365909 -94827755 - AluSx SINE Alu -6 306 1 1710 135 90 0 chr1 187365916 187366183 -94827481 - AluJb SINE Alu -21 291 1 3265 171 67 91 chr1 187366605 187367432 -94826232 + L1MB3 LINE L1 4158 5003 -1180 2087 126 7 0 chr1 187367432 187367726 -94825938 + AluSx SINE Alu 1 296 -16 3265 171 67 91 chr1 187367726 187368294 -94825370 + L1MB3 LINE L1 5003 5583 -600 2200 107 14 0 chr1 187368294 187368585 -94825079 + AluSg SINE Alu 1 295 -15 3265 171 67 91 chr1 187368585 187368699 -94824965 + L1MB3 LINE L1 5583 5698 -485 1591 180 0 0 chr1 187368699 187368949 -94824715 + AluJb SINE Alu 1 250 -62 3265 171 67 91 chr1 187368949 187369261 -94824403 + L1MB3 LINE L1 5698 5925 -258 1463 154 57 4 chr1 187369272 187369518 -94824146 - MER4B LTR ERV1 -7 603 345 44184 44 8 1 chr1 187369522 187375605 -94818059 - L1PA4 LINE L1 -26 6129 2 1913 111 85 62 chr1 187375605 187375958 -94817706 - MER4B LTR ERV1 -247 363 3 1083 175 42 38 chr1 187375961 187376058 -94817606 + L1MB3 LINE L1 5928 6023 -160 2013 147 0 0 chr1 187376058 187376371 -94817293 - AluSx SINE Alu 0 313 1 1083 175 42 38 chr1 187376371 187376512 -94817152 + L1MB3 LINE L1 6023 6168 -15 576 268 20 0 chr1 187376541 187376694 -94816970 + L1ME LINE L1 5504 5659 -511 1618 164 7 39 chr1 187376695 187376898 -94816766 - AluJo SINE Alu -15 297 106 2701 86 14 33 chr1 187376898 187377029 -94816635 - THE1A LTR MaLR 0 355 223 2413 97 0 0 chr1 187377029 187377337 -94816327 - AluSc SINE Alu -1 308 1 2701 86 14 33 chr1 187377337 187377567 -94816097 - THE1A LTR MaLR -132 223 1 1618 164 7 39 chr1 187377567 187377668 -94815996 - AluJo SINE Alu -206 106 3 410 200 11 21 chr1 187377698 187377793 -94815871 + L1ME LINE L1 5684 5777 -385 198 0 0 0 chr1 187378258 187378280 -94815384 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 468 130 162 15 chr1 187378950 187379075 -94814589 - MER69 DNA AcHobo -3 2523 43 1912 149 10 0 chr1 187379708 187380004 -94813660 + AluSx SINE Alu 9 307 -5 280 306 0 0 chr1 187380364 187380436 -94813228 + L2 LINE L2 3199 3270 -2 190 363 20 20 chr1 187380580 187380682 -94812982 - L2 LINE L2 -553 2761 2660 526 267 0 17 chr1 187381191 187381371 -94812293 - L1MEc LINE L1 -5307 1089 913 306 268 6 24 chr1 187381379 187381481 -94812183 + L1MDa LINE L1 1367 1571 -4811 1584 146 60 29 chr1 187381507 187381788 -94811876 + AluJo SINE Alu 1 290 -22 476 191 11 0 chr1 187381813 187381907 -94811757 + L1MDa LINE L1 2683 2777 -3605 378 317 30 41 chr1 187381962 187382230 -94811434 + L1MC4 LINE L1 4991 5255 -891 1424 234 80 41 chr1 187382259 187382721 -94810943 + L1MC4 LINE L1 5302 5781 -2027 423 272 114 64 chr1 187382729 187383395 -94810269 + L1MC4 LINE L1 7226 8015 -27 560 288 106 75 chr1 187383417 187383962 -94809702 - HAL1 LINE L1 -1094 1413 852 2314 113 3 0 chr1 187384180 187384490 -94809174 - AluSp SINE Alu -2 311 1 2000 153 0 3 chr1 187384839 187385146 -94808518 - AluJo SINE Alu -6 306 1 198 286 14 14 chr1 187385613 187385683 -94807981 + MIR SINE MIR 166 235 -27 1694 191 0 14 chr1 187386045 187386338 -94807326 - AluJb SINE Alu -23 289 1 1930 128 10 7 chr1 187386405 187386714 -94806950 - AluSx SINE Alu 0 312 2 1233 245 117 11 chr1 187387487 187387838 -94805826 + LTR16C LTR ERVL 104 491 0 181 411 0 0 chr1 187387880 187387953 -94805711 - MIR3 SINE MIR -6 202 130 759 167 8 8 chr1 187388037 187388158 -94805506 + FLAM_C SINE Alu 2 123 -16 198 0 0 0 chr1 187388158 187388180 -94805484 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1707 181 7 0 chr1 187388368 187388644 -94805020 + AluJo SINE Alu 2 279 -33 2280 122 3 0 chr1 187389050 187389361 -94804303 + AluSx SINE Alu 1 312 0 220 69 0 0 chr1 187389361 187389390 -94804274 + (GAA)n Simple_repeat Simple_repeat 1 180 0 782 187 8 0 chr1 187389663 187389786 -94803878 + FLAM_A SINE Alu 2 125 -8 363 235 41 20 chr1 187389867 187389965 -94803699 + L1ME LINE L1 5521 5620 -501 1690 161 21 0 chr1 187389969 187390248 -94803416 + AluJo SINE Alu 5 289 -23 2198 108 0 10 chr1 187390381 187390677 -94802987 + AluSg SINE Alu 1 293 -17 2357 212 45 82 chr1 187390887 187391273 -94802391 + L1 LINE L1 4563 4962 -1184 1485 219 14 3 chr1 187391273 187391560 -94802104 + AluJb SINE Alu 1 290 -22 2357 212 45 82 chr1 187391560 187391892 -94801772 + L1 LINE L1 4962 5250 -896 2991 112 31 0 chr1 187391892 187392313 -94801351 + MER57B LTR ERV1 1 434 0 2357 212 45 82 chr1 187392313 187392415 -94801249 + L1 LINE L1 5250 5354 -792 1880 80 24 0 chr1 187392391 187392642 -94801022 + L1PA15 LINE L1 5572 5828 -338 * 4601 96 74 11 chr1 187392646 187393305 -94800359 + L1PA7 LINE L1 2 702 -5759 15849 79 5 24 chr1 187393341 187395577 -94798087 + L1PA7 LINE L1 3558 5783 -686 2480 90 0 6 chr1 187395577 187395889 -94797775 + AluSg SINE Alu 1 310 0 15849 79 5 24 chr1 187395889 187396564 -94797100 + L1PA7 LINE L1 5783 6469 0 2283 130 17 3 chr1 187396564 187396907 -94796757 + L1PA15 LINE L1 5814 6164 -1 4251 157 44 20 chr1 187396920 187397053 -94796611 + L1MB2 LINE L1 5285 5413 -758 205 28 0 56 chr1 187397053 187397089 -94796575 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 2438 77 7 7 chr1 187397099 187397409 -94796255 + AluY SINE Alu 1 310 -1 4251 157 44 20 chr1 187397409 187397746 -94795918 + L1MB2 LINE L1 5421 5748 -423 225 0 0 0 chr1 187397746 187397771 -94795893 + (CA)n Simple_repeat Simple_repeat 2 26 0 4251 157 44 20 chr1 187397771 187398132 -94795532 + L1MB2 LINE L1 5748 6152 -19 22 0 0 0 chr1 187398132 187398154 -94795510 + AT_rich Low_complexity Low_complexity 1 22 0 226 98 0 49 chr1 187398154 187398195 -94795469 + Alu SINE Alu 96 134 -168 27 0 0 0 chr1 187398195 187398222 -94795442 + AT_rich Low_complexity Low_complexity 1 27 0 249 108 0 0 chr1 187398238 187398275 -94795389 - L1M4 LINE L1 -1286 4860 4824 2193 97 0 22 chr1 187398317 187398628 -94795036 + AluSq SINE Alu 1 304 -9 23 0 0 0 chr1 187398723 187398746 -94794918 + AT_rich Low_complexity Low_complexity 1 23 0 769 169 23 0 chr1 187398839 187398969 -94794695 + FLAM_C SINE Alu 1 133 0 330 67 0 0 chr1 187399619 187399664 -94794000 + (T)n Simple_repeat Simple_repeat 1 45 0 1851 156 3 10 chr1 187399929 187400224 -94793440 + AluJb SINE Alu 1 293 -19 465 298 55 17 chr1 187400439 187400620 -94793044 - MIR3 SINE MIR -6 202 15 1665 171 25 7 chr1 187401855 187402136 -94791528 + AluJo SINE Alu 1 286 -26 244 272 31 86 chr1 187402516 187402678 -94790986 + MER103 DNA DNA 3 155 -11 2373 87 0 23 chr1 187402843 187403152 -94790512 - AluSx SINE Alu -10 302 1 299 275 33 8 chr1 187403236 187403356 -94790308 - L1M4 LINE L1 -2301 3845 3723 385 179 15 0 chr1 187403357 187403424 -94790240 + AluJ/FLAM SINE Alu 1 68 -234 1858 129 0 0 chr1 187403524 187403788 -94789876 + AluSx SINE Alu 46 309 -3 754 262 31 9 chr1 187403795 187404020 -94789644 - L1M4 LINE L1 -2409 3737 3508 1938 251 63 75 chr1 187404331 187404524 -94789140 + L1M4c LINE L1 754 948 -5436 2198 113 3 0 chr1 187404524 187404817 -94788847 - AluSx SINE Alu -18 294 1 1938 251 63 75 chr1 187404817 187404910 -94788754 + L1M4c LINE L1 948 1041 -5343 2242 111 10 0 chr1 187404910 187405217 -94788447 + AluSg SINE Alu 1 310 0 1938 251 63 75 chr1 187405217 187405657 -94788007 + L1M4c LINE L1 1041 1485 -4899 2239 128 0 0 chr1 187405657 187405954 -94787710 - AluSx SINE Alu -15 297 1 1938 251 63 75 chr1 187405954 187406081 -94787583 + L1M4c LINE L1 1485 1599 -4785 198 0 0 0 chr1 187406081 187406103 -94787561 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1938 251 63 75 chr1 187406103 187406213 -94787451 + L1M4c LINE L1 1599 1709 -4675 2226 89 7 0 chr1 187406335 187406616 -94787048 + AluSq SINE Alu 11 293 -20 1085 184 36 70 chr1 187406617 187406948 -94786716 + L1M4c LINE L1 2445 2764 -3618 1272 263 67 29 chr1 187406963 187407408 -94786256 + LTR16B LTR ERVL 3 464 0 388 272 68 108 chr1 187407410 187407763 -94785901 + HERV16 LTR ERVL 3 341 -4655 1854 137 0 25 chr1 187407777 187408085 -94785579 + AluSx SINE Alu 12 312 0 1769 292 157 10 chr1 187408336 187408533 -94785131 + HERV16 LTR ERVL 610 777 -4219 2143 96 0 36 chr1 187408533 187408675 -94784989 + AluY SINE Alu 1 128 -183 2934 10 0 0 chr1 187408675 187408987 -94784677 + AluYb8 SINE Alu 1 312 -6 2143 96 0 36 chr1 187408987 187409146 -94784518 + AluY SINE Alu 128 291 -20 1769 292 157 10 chr1 187409146 187409650 -94784014 + HERV16 LTR ERVL 777 1414 -3582 25 0 0 0 chr1 187409830 187409855 -94783809 + AT_rich Low_complexity Low_complexity 1 25 0 206 271 10 0 chr1 187410115 187410211 -94783453 + (TA)n Simple_repeat Simple_repeat 2 98 0 348 24 0 0 chr1 187410227 187410268 -94783396 + (CA)n Simple_repeat Simple_repeat 2 42 0 1620 163 51 0 chr1 187410275 187410532 -94783132 + AluJo SINE Alu 1 270 -42 1498 207 3 27 chr1 187411038 187411337 -94782327 + AluJb SINE Alu 1 292 -20 348 83 56 28 chr1 187411338 187411446 -94782218 + (TA)n Simple_repeat Simple_repeat 1 111 0 262 104 64 58 chr1 187411436 187411609 -94782055 + (CATATA)n Simple_repeat Simple_repeat 2 175 0 * 663 45 57 40 chr1 187411588 187411764 -94781900 + (CTATA)n Simple_repeat Simple_repeat 2 180 0 597 165 0 0 chr1 187411789 187411880 -94781784 + FRAM SINE Alu 43 133 -43 611 95 34 39 chr1 187411892 187412071 -94781593 + (TA)n Simple_repeat Simple_repeat 1 178 0 461 184 170 48 chr1 187412775 187412922 -94780742 - MER96 DNA MER1_type? -9 166 2 1182 128 66 33 chr1 187413615 187413857 -94779807 - L1MB8 LINE L1 0 6178 5929 2058 127 0 7 chr1 187413884 187414176 -94779488 + AluJb SINE Alu 22 311 -1 2089 148 0 0 chr1 187414406 187414716 -94778948 + AluJb SINE Alu 1 310 -2 709 203 98 0 chr1 187414823 187414986 -94778678 - MER5A DNA MER1_type 0 189 11 22 35 0 0 chr1 187415548 187415577 -94778087 + AT_rich Low_complexity Low_complexity 1 29 0 294 195 13 52 chr1 187416338 187416415 -94777249 - L2 LINE L2 -19 3294 3221 1688 132 66 11 chr1 187416721 187416994 -94776670 - AluJo SINE Alu -14 298 11 449 231 21 23 chr1 187417346 187417540 -94776124 + MER8 DNA MER2_type 1 238 -1 603 174 0 0 chr1 187417589 187417704 -94775960 - AluJb SINE Alu -2 310 196 765 200 143 0 chr1 187417959 187418134 -94775530 - MIR SINE MIR -32 230 31 22 56 0 0 chr1 187419623 187419659 -94774005 + GC_rich Low_complexity Low_complexity 1 36 0 207 147 15 103 chr1 187420961 187421029 -94772635 + L2 LINE L2 3221 3282 -31 568 163 140 140 chr1 187421395 187421539 -94772125 - AluJb SINE Alu -10 302 159 1830 150 7 7 chr1 187421539 187421839 -94771825 - AluJb SINE Alu -1 311 12 568 163 140 140 chr1 187421839 187421861 -94771803 - AluJb SINE Alu -153 159 138 2452 79 0 3 chr1 187421861 187422166 -94771498 - AluY SINE Alu -2 309 6 568 163 140 140 chr1 187422166 187422219 -94771445 - AluJb SINE Alu -173 139 82 870 146 0 0 chr1 187422298 187422421 -94771243 + FLAM_C SINE Alu 1 123 -20 985 171 109 0 chr1 187422477 187422670 -94770994 + AluJb SINE Alu 86 299 -13 1425 151 108 0 chr1 187422676 187422934 -94770730 + AluJo SINE Alu 1 286 -26 2186 125 0 10 chr1 187423303 187423615 -94770049 - AluSx SINE Alu -3 309 1 1873 114 71 0 chr1 187424152 187424433 -94769231 - AluSg SINE Alu -9 301 1 542 193 167 102 chr1 187425454 187425884 -94767780 - Charlie7 DNA MER1_type -88 2524 2067 846 175 0 7 chr1 187425884 187426027 -94767637 + AluJb SINE Alu 157 298 -14 30 59 0 0 chr1 187426854 187426905 -94766759 + AT_rich Low_complexity Low_complexity 1 51 0 629 186 8 0 chr1 187426906 187427047 -94766617 - FLAM_C SINE Alu 0 142 1 2233 202 166 18 chr1 187427047 187427494 -94766170 - Charlie2 DNA MER1_type -62 2800 2420 2384 95 3 0 chr1 187427494 187427800 -94765864 + AluSq SINE Alu 2 308 -5 2233 202 166 18 chr1 187427800 187428172 -94765492 - Charlie2 DNA MER1_type -442 2420 1860 259 246 0 0 chr1 187428211 187428276 -94765388 - Charlie2 DNA MER1_type -2615 247 183 1648 181 57 77 chr1 187428349 187428752 -94764912 - MSTD LTR MaLR 0 396 2 899 189 33 193 chr1 187429344 187429888 -94763776 + L2 LINE L2 2317 2773 -541 296 274 161 0 chr1 187429928 187430052 -94763612 + L2 LINE L2 2934 3077 -236 2306 112 0 0 chr1 187430312 187430615 -94763049 + AluSx SINE Alu 1 303 -9 1937 109 25 0 chr1 187431491 187431765 -94761899 - AluSx SINE Alu -31 281 1 1409 128 41 8 chr1 187431806 187432048 -94761616 - L1MA8 LINE L1 -6 6285 6036 201 262 0 0 chr1 187432619 187432680 -94760984 + (TA)n Simple_repeat Simple_repeat 1 61 0 2313 81 3 10 chr1 187432736 187433032 -94760632 - AluSq SINE Alu -19 294 1 441 250 43 9 chr1 187433130 187433246 -94760418 - L2 LINE L2 -3 3310 3191 525 146 11 11 chr1 187434059 187434148 -94759516 + AluJb SINE Alu 199 287 -25 1238 147 0 93 chr1 187434812 187435071 -94758593 - AluJb SINE Alu -77 235 1 250 326 41 10 chr1 187436280 187436378 -94757286 + MIR SINE MIR 38 138 -124 212 303 163 43 chr1 187437014 187437291 -94756373 + L2 LINE L2 2963 3272 0 366 241 15 73 chr1 187437378 187437515 -94756149 + MIR SINE MIR 50 178 -84 284 332 124 26 chr1 187438459 187438766 -94754898 + L2 LINE L2 2431 2767 -547 186 229 49 33 chr1 187438965 187439026 -94754638 + L2 LINE L2 2987 3048 -224 1125 164 14 19 chr1 187439485 187439698 -94753966 + AluJo SINE Alu 11 222 -90 614 283 73 9 chr1 187439936 187440155 -94753509 - MIR SINE MIR -2 260 28 390 135 0 54 chr1 187440330 187440404 -94753260 + MER21B LTR ERV1 1 70 -793 254 191 0 21 chr1 187440438 187440485 -94753179 + MER21B LTR ERV1 40 85 -778 * 3702 178 45 50 chr1 187440471 187441299 -94752365 + MER21B LTR ERV1 39 862 -1 1754 174 3 0 chr1 187441664 187441946 -94751718 - AluJb SINE Alu -28 284 2 1588 174 23 57 chr1 187441990 187442289 -94751375 + AluJo SINE Alu 1 289 -23 225 0 0 0 chr1 187442427 187442452 -94751212 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 351 284 43 28 chr1 187443144 187443285 -94750379 + MIR SINE MIR 59 201 -61 277 290 67 47 chr1 187443387 187443580 -94750084 - HAL1 LINE L1 -56 2451 2255 1013 196 0 0 chr1 187443586 187443759 -94749905 - FAM SINE Alu -2 173 1 592 122 31 0 chr1 187443772 187443870 -94749794 - AluSx SINE Alu -9 300 200 851 106 0 9 chr1 187443870 187443983 -94749681 - AluSx SINE Alu -201 112 1 1984 141 0 7 chr1 187444332 187444623 -94749041 + AluSx SINE Alu 2 290 -22 291 28 0 0 chr1 187444623 187444659 -94749005 + (CA)n Simple_repeat Simple_repeat 2 37 0 686 176 32 0 chr1 187444956 187445081 -94748583 + FLAM_C SINE Alu 1 129 -14 2240 108 7 0 chr1 187446106 187446411 -94747253 - AluSp SINE Alu -6 307 1 1528 128 34 110 chr1 187446414 187446598 -94747066 - AluJo SINE Alu -10 302 152 2559 52 0 13 chr1 187446598 187446903 -94746761 - AluY SINE Alu -10 301 1 1528 128 34 110 chr1 187446903 187447045 -94746619 - AluJo SINE Alu -160 152 1 4096 76 26 0 chr1 187447630 187448168 -94745496 - L1PA8A LINE L1 -28 6103 5552 2236 77 20 10 chr1 187448164 187448614 -94745050 + L1PA8A LINE L1 5112 5558 -573 * 22 0 0 0 chr1 187450573 187450595 -94743069 + AT_rich Low_complexity Low_complexity 1 22 0 185 261 123 0 chr1 187451036 187451101 -94742563 - MIR SINE MIR -67 195 123 2279 138 78 2 chr1 187452610 187453008 -94740656 - MSTA LTR MaLR 0 428 1 770 249 139 27 chr1 187453396 187453770 -94739894 - L2 LINE L2 -36 3277 2862 326 310 155 10 chr1 187455439 187455639 -94738025 - MIR SINE MIR -11 251 23 477 0 0 0 chr1 187455965 187456018 -94737646 + (TC)n Simple_repeat Simple_repeat 1 53 0 243 0 0 0 chr1 187456017 187456044 -94737620 + (CA)n Simple_repeat Simple_repeat 1 27 0 * 697 280 86 47 chr1 187457153 187457514 -94736150 + L2 LINE L2 2937 3311 -2 1725 148 20 14 chr1 187457759 187458056 -94735608 - L1PB4 LINE L1 0 6156 5858 1748 118 0 0 chr1 187458056 187458284 -94735380 + AluSg SINE Alu 1 228 -82 4013 125 9 18 chr1 187458390 187459112 -94734552 - L1PB4 LINE L1 -283 5873 5159 1896 161 0 32 chr1 187459739 187460049 -94733615 + AluJb SINE Alu 3 302 -10 613 140 112 0 chr1 187460164 187460271 -94733393 - 5S rRNA rRNA -2 119 1 255 328 22 30 chr1 187462618 187462752 -94730912 - MER5A DNA MER1_type -22 167 35 * 371 370 15 0 chr1 187462640 187462775 -94730889 + MER5A DNA MER1_type 53 189 0 953 195 0 32 chr1 187462786 187462971 -94730693 - MER5A DNA MER1_type -3 186 8 182 347 150 37 chr1 187463311 187463605 -94730059 - L2 LINE L2 0 3272 2946 423 315 42 84 chr1 187464064 187464350 -94729314 + L2 LINE L2 2999 3272 0 330 26 0 0 chr1 187465011 187465050 -94728614 + (CA)n Simple_repeat Simple_repeat 1 39 0 500 235 65 35 chr1 187465340 187465510 -94728154 + MER97c DNA MER1_type? 4 178 -912 656 319 15 11 chr1 187466111 187466371 -94727293 + L3 LINE CR1 1227 1487 -90 647 91 63 140 chr1 187466415 187466558 -94727106 - LTR34 LTR ERV1 -567 132 1 1697 131 4 0 chr1 187466846 187467082 -94726582 + AluSx SINE Alu 54 290 -22 266 0 0 29 chr1 187467086 187467121 -94726543 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 373 250 113 16 chr1 187467127 187467251 -94726413 + MIR SINE MIR 16 151 -57 619 277 121 16 chr1 187467305 187467561 -94726103 + L2 LINE L2 1396 1678 -1636 563 232 22 42 chr1 187467569 187467919 -94725745 + L1MC5 LINE L1 7529 7928 -33 451 288 82 21 chr1 187468221 187468464 -94725200 - MIR SINE MIR -4 258 1 315 308 54 23 chr1 187468464 187468576 -94725088 + L2 LINE L2 3157 3272 0 240 35 0 0 chr1 187470501 187470530 -94723134 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 188 362 114 19 chr1 187470686 187470791 -94722873 + L2 LINE L2 3153 3267 -5 184 348 160 21 chr1 187471664 187472032 -94721632 - L2 LINE L2 -357 2957 2502 370 274 142 40 chr1 187472038 187472264 -94721400 - MIR SINE MIR -10 252 4 455 248 135 77 chr1 187472269 187472491 -94721173 - L2 LINE L2 -862 2452 2218 1980 196 58 58 chr1 187473135 187473634 -94720030 + MLT1F LTR MaLR 19 517 -25 289 289 35 63 chr1 187473744 187473891 -94719773 - MIR SINE MIR -68 140 3 278 366 23 17 chr1 187473894 187474069 -94719595 + MIR3 SINE MIR 33 208 0 191 315 197 34 chr1 187474136 187474314 -94719350 + L3b LINE CR1 1289 1495 -88 356 291 82 6 chr1 187474474 187474632 -94719032 + MIR SINE MIR 79 248 -14 274 304 0 0 chr1 187476099 187476178 -94717486 - MIR SINE MIR -105 103 25 410 254 11 11 chr1 187476980 187477157 -94716507 + GA-rich Low_complexity Low_complexity 3 179 0 360 308 19 13 chr1 187477556 187477712 -94715952 + L1MEc LINE L1 1626 1782 -4614 319 310 82 39 chr1 187477730 187477985 -94715679 + L1MEc LINE L1 1857 2122 -4274 1884 250 65 44 chr1 187477992 187478882 -94714782 + L1MEc LINE L1 2145 3054 -3161 1330 249 72 45 chr1 187479019 187479548 -94714116 - HAL1 LINE L1 -722 1785 1243 1891 142 12 52 chr1 187481121 187481446 -94712218 + AluSx SINE Alu 1 312 0 216 97 0 0 chr1 187481732 187481763 -94711901 + (TA)n Simple_repeat Simple_repeat 1 31 0 275 297 250 16 chr1 187482297 187482489 -94711175 + MIR SINE MIR 20 256 -6 180 111 0 0 chr1 187482656 187482683 -94710981 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 495 297 43 40 chr1 187483274 187483550 -94710114 + L2 LINE L2 2539 2815 -499 518 206 61 6 chr1 187484419 187484584 -94709080 - MER104 DNA MER2_type -3 177 4 2403 82 0 3 chr1 187485741 187486044 -94707620 + AluY SINE Alu 1 302 -9 1988 171 0 0 chr1 187486188 187486486 -94707178 - AluSx SINE Alu -14 298 1 190 191 0 0 chr1 187486615 187486657 -94707007 - L2 LINE L2 -3 3310 3269 1697 195 35 48 chr1 187486734 187487129 -94706535 - MLT1B LTR MaLR 0 390 1 361 294 42 0 chr1 187487216 187487335 -94706329 - LTR16A LTR ERVL -87 363 240 1180 331 69 22 chr1 187487595 187488218 -94705446 - HERV16 LTR ERVL -4340 656 5 608 327 80 18 chr1 187488232 187488630 -94705034 - LTR16A LTR ERVL -12 438 16 185 147 29 0 chr1 187489333 187489367 -94704297 + L3 LINE CR1 1297 1331 -246 298 361 8 16 chr1 187490338 187490460 -94703204 + MIR SINE MIR 16 136 -72 6290 23 0 0 chr1 187490463 187491194 -94702470 + L1PA4 LINE L1 5424 6154 -1 297 300 90 20 chr1 187491361 187491461 -94702203 + L2 LINE L2 3162 3268 -4 23 86 0 0 chr1 187491480 187491538 -94702126 + AT_rich Low_complexity Low_complexity 1 58 0 651 304 154 13 chr1 187491625 187492182 -94701482 - L2 LINE L2 -12 3301 2653 1167 279 61 34 chr1 187492205 187492614 -94701050 - LTR16C LTR ERVL -2 489 70 596 287 159 10 chr1 187492672 187492961 -94700703 - L2 LINE L2 -716 2598 2267 18117 169 23 12 chr1 187492961 187495542 -94698122 + L1PA14 LINE L1 11 2561 -5023 2084 142 6 0 chr1 187495542 187495853 -94697811 + AluSq SINE Alu 1 313 0 18117 169 23 12 chr1 187495853 187496954 -94696710 + L1PA14 LINE L1 2561 3648 -3936 1904 144 4 4 chr1 187496954 187497270 -94696394 + AluSc SINE Alu 1 316 0 18117 169 23 12 chr1 187497270 187498335 -94695329 + L1PA14 LINE L1 3648 4699 -2885 2275 79 23 26 chr1 187498335 187498640 -94695024 - AluY SINE Alu -7 304 1 18117 169 23 12 chr1 187498640 187500378 -94693286 + L1PA14 LINE L1 4699 6835 -749 3820 111 19 2 chr1 187500479 187501055 -94692609 + L1PA14 LINE L1 7010 7595 -4 931 108 0 0 chr1 187501090 187501229 -94692435 + L1MB1 LINE L1 6029 6167 -1 472 292 87 50 chr1 187501454 187501699 -94691965 - MIR SINE MIR -10 252 3 320 228 40 60 chr1 187501881 187502030 -94691634 - MER103 DNA DNA -2 164 19 221 224 119 0 chr1 187502227 187502294 -94691370 - L2 LINE L2 -5 3267 3193 6319 176 48 72 chr1 187502481 187504101 -94689563 - MER45R DNA AcHobo 0 1581 1 208 309 148 0 chr1 187504753 187504834 -94688830 - MIR SINE MIR -6 256 164 234 295 205 18 chr1 187505212 187505324 -94688340 - MIR SINE MIR -113 149 17 23 33 0 0 chr1 187505786 187505816 -94687848 + AT_rich Low_complexity Low_complexity 1 30 0 210 37 0 0 chr1 187506581 187506608 -94687056 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1655 110 4 9 chr1 187506610 187506838 -94686826 - AluSc SINE Alu -18 291 65 230 349 101 9 chr1 187506842 187506951 -94686713 - L3 LINE CR1 -1226 351 233 1670 212 9 3 chr1 187508234 187508569 -94685095 - MLT-int LTR MaLR -136 1599 1263 679 167 9 0 chr1 187508627 187508741 -94684923 - MLT1B LTR MaLR 0 390 276 644 233 56 75 chr1 187508846 187509112 -94684552 + MIR SINE MIR 2 262 0 811 222 115 13 chr1 187510071 187510305 -94683359 - MIR SINE MIR 0 262 5 193 284 128 91 chr1 187510299 187510651 -94683013 + L2 LINE L2 2876 3240 -32 * 24 0 0 0 chr1 187511119 187511143 -94682521 + AT_rich Low_complexity Low_complexity 1 24 0 2166 128 3 0 chr1 187511901 187512198 -94681466 + AluSx SINE Alu 1 298 -14 2286 246 61 11 chr1 187512389 187513015 -94680649 + L2 LINE L2 1518 2174 -1140 264 254 0 0 chr1 187513018 187513081 -94680583 + L2 LINE L2 2287 2349 -965 25 95 0 0 chr1 187513294 187513368 -94680296 + AT_rich Low_complexity Low_complexity 1 74 0 357 269 102 78 chr1 187513546 187513713 -94679951 + L1MEd LINE L1 13 183 -5936 810 265 47 0 chr1 187513971 187514205 -94679459 + MLT1F1 LTR MaLR 323 567 0 26 30 0 0 chr1 187514398 187514431 -94679233 + AT_rich Low_complexity Low_complexity 1 33 0 374 289 28 34 chr1 187514882 187515173 -94678491 - L1M4 LINE L1 -3617 2529 2241 209 197 0 45 chr1 187515297 187515363 -94678301 + T-rich Low_complexity Low_complexity 3 65 0 14728 138 19 5 chr1 187515521 187517903 -94675761 - Tigger1 DNA MER2_type 0 2418 5 28 0 0 0 chr1 187517913 187517941 -94675723 + AT_rich Low_complexity Low_complexity 1 28 0 244 116 0 23 chr1 187518017 187518060 -94675604 + MSTD LTR MaLR 1 42 -354 2946 229 49 66 chr1 187518060 187518904 -94674760 + MSTD-int LTR MaLR 907 1735 0 545 190 0 10 chr1 187518909 187519009 -94674655 + MSTD LTR MaLR 9 107 -289 5257 131 77 5 chr1 187519009 187520781 -94672883 + L1PB1 LINE L1 3 2049 -4814 376 45 0 0 chr1 187520782 187520826 -94672838 + (T)n Simple_repeat Simple_repeat 1 44 0 1368 89 6 6 chr1 187520928 187521108 -94672556 - AluY SINE Alu -29 282 103 12352 200 54 20 chr1 187521134 187525474 -94668190 + L1PB1 LINE L1 2148 6528 -339 263 49 24 0 chr1 187525474 187525515 -94668149 + (TA)n Simple_repeat Simple_repeat 2 43 0 12352 200 54 20 chr1 187525515 187525867 -94667797 + L1PB1 LINE L1 6528 6866 -1 22 0 0 0 chr1 187525867 187525889 -94667775 + AT_rich Low_complexity Low_complexity 1 22 0 1596 158 70 10 chr1 187525889 187526187 -94667477 + MSTD LTR MaLR 81 396 0 310 214 39 39 chr1 187526190 187526293 -94667371 + L1M4 LINE L1 3868 3970 -2176 1874 146 4 4 chr1 187526322 187526644 -94667020 - AluSx SINE Alu 0 322 1 2146 139 3 0 chr1 187526816 187527126 -94666538 - AluY SINE Alu 0 311 1 1074 78 18 6 chr1 187527164 187527331 -94666333 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 480 202 0 48 chr1 187527331 187527519 -94666145 + GA-rich Low_complexity Low_complexity 1 179 0 731 90 17 56 chr1 187527548 187527726 -94665938 + (GGAA)n Simple_repeat Simple_repeat 1 171 0 312 254 80 29 chr1 187527726 187527864 -94665800 + L1M4 LINE L1 4146 4290 -1856 331 229 118 49 chr1 187527939 187528083 -94665581 + L1M4 LINE L1 4400 4553 -1593 22087 20 0 0 chr1 187528098 187531585 -94662079 + L1HS LINE L1 2653 6140 -10 234 62 0 0 chr1 187531585 187531617 -94662047 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 198 0 0 0 chr1 187531650 187531672 -94661992 + (A)n Simple_repeat Simple_repeat 1 22 0 371 310 0 0 chr1 187531676 187531821 -94661843 + L1M4 LINE L1 4562 4706 -1440 225 261 113 49 chr1 187531893 187532035 -94661629 + MLT1J LTR MaLR 18 168 -343 14563 57 4 0 chr1 187532249 187534889 -94658775 - L1PA6 LINE L1 0 6154 3500 996 129 7 0 chr1 187534889 187535044 -94658620 - L1P3 LINE L1 -6296 165 10 361 304 56 14 chr1 187535201 187535559 -94658105 + L1M4 LINE L1 4759 5131 -1015 344 341 112 3 chr1 187535657 187535957 -94657707 - L2 LINE L2 -246 3067 2725 379 297 81 61 chr1 187536407 187536509 -94657155 + L1MEd LINE L1 600 698 -5421 2712 171 23 27 chr1 187536509 187537107 -94656557 + L1MB3 LINE L1 5586 6181 -2 379 297 81 61 chr1 187537107 187537250 -94656414 + L1MEd LINE L1 698 850 -5269 4150 42 0 0 chr1 187537268 187537832 -94655832 + L1PA5 LINE L1 5612 6175 0 654 112 20 0 chr1 187537840 187537938 -94655726 + AluJo SINE Alu 35 134 -178 438 297 66 37 chr1 187538029 187538691 -94654973 + L1MEd LINE L1 904 1878 -4252 23 0 0 0 chr1 187538713 187538736 -94654928 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 187538848 187538869 -94654795 + AT_rich Low_complexity Low_complexity 1 21 0 973 308 157 14 chr1 187539002 187539644 -94654020 - L2 LINE L2 -641 2673 1940 929 160 57 11 chr1 187539709 187540014 -94653650 + L1M4 LINE L1 5140 5450 -728 2568 87 3 0 chr1 187540027 187540383 -94653281 - L1PA13 LINE L1 -2 6161 5805 614 342 91 23 chr1 187540399 187540885 -94652779 - L2 LINE L2 -1487 1827 1309 566 293 57 45 chr1 187540872 187541118 -94652546 + L2 LINE L2 3065 3313 0 * 180 77 0 0 chr1 187541749 187541775 -94651889 + (CCA)n Simple_repeat Simple_repeat 1 26 0 429 324 14 0 chr1 187542610 187542752 -94650912 - MIR SINE MIR 0 262 119 1791 133 3 57 chr1 187542845 187543162 -94650502 - AluSx SINE Alu -10 302 3 589 305 20 25 chr1 187543212 187543415 -94650249 - MIR3 SINE MIR -5 203 2 1125 290 56 30 chr1 187544660 187544796 -94648868 + MLT1I LTR MaLR 1 132 -277 2115 124 0 0 chr1 187544796 187545095 -94648569 - AluSx SINE Alu -13 299 1 1125 290 56 30 chr1 187545095 187545351 -94648313 + MLT1I LTR MaLR 132 403 -6 284 322 153 31 chr1 187545497 187545758 -94647906 + L2 LINE L2 2932 3224 -89 240 275 142 50 chr1 187546258 187546378 -94647286 + MIR SINE MIR 131 261 -1 459 276 31 37 chr1 187546828 187546991 -94646673 - MIR3 SINE MIR -30 178 17 457 311 77 50 chr1 187547538 187547760 -94645904 - MIR SINE MIR -15 247 20 1856 119 0 11 chr1 187548451 187548728 -94644936 + AluSq SINE Alu 25 298 -15 302 298 58 10 chr1 187548732 187548836 -94644828 + L3 LINE CR1 1461 1569 -8 584 321 132 22 chr1 187548947 187549546 -94644118 - L2 LINE L2 -2 3311 2620 474 236 53 78 chr1 187549557 187549576 -94644088 + L1M4 LINE L1 3768 3786 -2360 2330 47 3 20 chr1 187549576 187549875 -94643789 + AluSp SINE Alu 1 294 -19 474 236 53 78 chr1 187549875 187549962 -94643702 + L1M4 LINE L1 3786 3874 -2272 2001 146 14 55 chr1 187549962 187550021 -94643643 - MER7A DNA MER2_type -2692 346 286 1819 143 14 0 chr1 187550021 187550319 -94643345 + AluSx SINE Alu 7 312 0 2001 146 14 55 chr1 187550319 187550622 -94643042 - MER7A DNA MER2_type -2752 286 1 474 236 53 78 chr1 187550622 187550644 -94643020 + L1M4 LINE L1 3874 3895 -2251 2038 128 3 0 chr1 187550644 187550940 -94642724 + AluSx SINE Alu 1 297 -15 474 236 53 78 chr1 187550940 187551240 -94642424 + L1M4 LINE L1 3895 4230 -1916 216 303 241 12 chr1 187551287 187551449 -94642215 - MIR SINE MIR -56 206 8 214 182 30 15 chr1 187552502 187552568 -94641096 + GA-rich Low_complexity Low_complexity 2 68 0 213 154 0 0 chr1 187553557 187553596 -94640068 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 775 219 7 0 chr1 187553598 187553744 -94639920 - FRAM SINE Alu -24 152 6 268 288 18 77 chr1 187554491 187554661 -94639003 + LTR16C LTR ERVL 332 491 0 189 0 0 0 chr1 187556315 187556336 -94637328 + (CCA)n Simple_repeat Simple_repeat 1 21 0 415 220 18 37 chr1 187556601 187556710 -94636954 + L1ME2 LINE L1 5992 6098 -66 231 218 0 0 chr1 187556854 187556909 -94636755 + L1MC5 LINE L1 7806 7860 -101 2279 238 99 56 chr1 187556942 187557829 -94635835 - L1M4 LINE L1 -5616 926 2 498 204 139 0 chr1 187557981 187558089 -94635575 - FLAM_A SINE Alu -10 123 1 2314 66 0 38 chr1 187558311 187558628 -94635036 - AluY SINE Alu -6 305 1 277 375 97 24 chr1 187559499 187559870 -94633794 + L2 LINE L2 2872 3269 -3 327 266 0 161 chr1 187560303 187560495 -94633169 - MIR3 SINE MIR -23 185 25 213 281 93 50 chr1 187561696 187561835 -94631829 + MIR3 SINE MIR 57 201 -7 235 351 43 0 chr1 187562385 187562479 -94631185 - L2 LINE L2 -221 3051 2954 246 276 48 38 chr1 187562780 187562885 -94630779 - MIR SINE MIR -25 237 132 2270 177 27 56 chr1 187562898 187562999 -94630665 + MLT1D LTR MaLR 1 103 -402 2184 75 0 24 chr1 187562999 187563293 -94630371 + AluY SINE Alu 6 292 -19 2270 177 27 56 chr1 187563293 187563710 -94629954 + MLT1D LTR MaLR 103 504 -1 2072 110 14 0 chr1 187564010 187564300 -94629364 + AluSq SINE Alu 1 294 -19 869 106 14 14 chr1 187564777 187564919 -94628745 + L1MC3 LINE L1 7305 7446 -339 252 333 43 0 chr1 187565113 187565185 -94628479 + MIR3 SINE MIR 87 162 -46 546 284 154 6 chr1 187565185 187565347 -94628317 - MER5A DNA MER1_type 0 189 4 1178 156 24 9 chr1 187565361 187565573 -94628091 + MER20 DNA MER1_type 4 218 -1 620 186 29 36 chr1 187565589 187565729 -94627935 - MER5A DNA MER1_type -24 165 27 412 258 67 18 chr1 187566266 187566431 -94627233 + MIR SINE MIR 33 203 -59 365 200 25 12 chr1 187566430 187566510 -94627154 - L2 LINE L2 -21 3292 3212 * 2084 117 3 0 chr1 187566538 187566829 -94626835 - AluSq SINE Alu -21 292 1 192 247 55 41 chr1 187567247 187567320 -94626344 - L2 LINE L2 -2 3311 3238 399 240 16 24 chr1 187567930 187568055 -94625609 - MIR SINE MIR -82 180 57 496 262 40 27 chr1 187569105 187569290 -94624374 + MIR SINE MIR 20 204 -58 207 0 0 0 chr1 187569352 187569375 -94624289 + (A)n Simple_repeat Simple_repeat 1 23 0 2233 62 10 20 chr1 187569419 187569723 -94623941 + AluY SINE Alu 1 301 -10 506 229 76 0 chr1 187570127 187570245 -94623419 - MIR SINE MIR -124 138 12 1175 270 81 64 chr1 187570376 187571134 -94622530 - L2 LINE L2 0 3313 2522 653 302 58 5 chr1 187571944 187572133 -94621531 - MIR SINE MIR -7 255 57 749 222 57 28 chr1 187572150 187572362 -94621302 - L1ME3A LINE L1 -9 6161 5944 2123 118 3 0 chr1 187573408 187573713 -94619951 + AluSq SINE Alu 1 306 -7 358 273 115 34 chr1 187573947 187574156 -94619508 + MIR SINE MIR 30 255 -7 369 0 0 0 chr1 187574287 187574328 -94619336 + (CA)n Simple_repeat Simple_repeat 2 42 0 5892 121 10 4 chr1 187574490 187575459 -94618205 + L1PA16 LINE L1 4855 5831 -335 2367 64 3 0 chr1 187575459 187575757 -94617907 + AluY SINE Alu 1 299 -12 5892 121 10 4 chr1 187575757 187576095 -94617569 + L1PA16 LINE L1 5831 6166 0 272 296 84 89 chr1 187576998 187577211 -94616453 - MIR SINE MIR -7 255 44 223 226 38 0 chr1 187577488 187577541 -94616123 + L2 LINE L2 3210 3264 -8 2429 56 0 0 chr1 187577760 187578064 -94615600 + AluSc SINE Alu 1 304 -5 215 306 108 27 chr1 187578126 187578237 -94615427 - L2 LINE L2 -14 3299 3180 345 201 30 112 chr1 187578399 187578533 -94615131 + L1MEd LINE L1 32 154 -5965 590 288 48 30 chr1 187578606 187578758 -94614906 + L1MEd LINE L1 926 1074 -5045 1760 166 0 14 chr1 187578758 187579078 -94614586 + AluJb SINE Alu 1 312 0 590 288 48 30 chr1 187579078 187579321 -94614343 + L1MEd LINE L1 1074 1257 -4862 3568 185 76 45 chr1 187579914 187580609 -94613055 + L1ME2 LINE L1 4270 4942 -1204 1518 176 52 3 chr1 187580609 187580899 -94612765 + AluJo SINE Alu 3 306 -6 3568 185 76 45 chr1 187580899 187580953 -94612711 + L1ME2 LINE L1 4942 4993 -1153 1972 118 23 3 chr1 187580953 187581232 -94612432 + AluSx SINE Alu 1 288 -24 366 23 0 0 chr1 187581232 187581275 -94612389 + (CA)n Simple_repeat Simple_repeat 2 44 0 1972 118 23 3 chr1 187581275 187581301 -94612363 + AluSx SINE Alu 288 312 0 1966 121 6 46 chr1 187581306 187581629 -94612035 + AluSg SINE Alu 1 310 0 2151 108 0 0 chr1 187581638 187581934 -94611730 + AluSg SINE Alu 1 296 -14 3568 185 76 45 chr1 187581934 187582150 -94611514 + L1ME2 LINE L1 5003 5288 -858 876 137 0 50 chr1 187582150 187582289 -94611375 + FLAM_C SINE Alu 1 132 -1 3568 185 76 45 chr1 187582289 187582334 -94611330 + L1ME2 LINE L1 5288 5330 -816 588 179 49 60 chr1 187582321 187582505 -94611159 + L1ME2 LINE L1 5814 5995 -169 * 709 189 19 19 chr1 187582518 187582677 -94610987 + L1MA10 LINE L1 6174 6332 -2 1222 254 74 52 chr1 187582776 187583197 -94610467 + MLT1J LTR MaLR 78 507 -4 207 325 37 69 chr1 187583775 187583963 -94609701 - L2 LINE L2 -3 3269 3088 401 305 99 17 chr1 187584489 187584661 -94609003 + MIR3 SINE MIR 8 202 -6 1020 177 56 44 chr1 187584662 187584905 -94608759 + MER33 DNA MER1_type 1 240 -2345 1255 191 129 18 chr1 187584905 187585177 -94608487 - AluJo SINE Alu 0 302 1 1020 177 56 44 chr1 187585177 187585223 -94608441 + MER33 DNA MER1_type 240 284 -40 1760 184 91 35 chr1 187585368 187585829 -94607835 + Charlie4a DNA MER1_type 1 487 -21 376 264 168 20 chr1 187586519 187586716 -94606948 - MIR SINE MIR -6 256 31 251 302 47 12 chr1 187586901 187586987 -94606677 + MIR3 SINE MIR 85 173 -35 1150 153 30 0 chr1 187587470 187587673 -94605991 + AluJb SINE Alu 95 303 -9 181 279 33 16 chr1 187587683 187587744 -94605920 + MER5A DNA MER1_type 104 165 -24 636 154 15 62 chr1 187587846 187587976 -94605688 + FLAM_A SINE Alu 1 124 -9 199 263 0 79 chr1 187588180 187588256 -94605408 + MIR SINE MIR 122 191 -71 2369 71 0 19 chr1 187589014 187589324 -94604340 + AluY SINE Alu 1 304 -7 1673 156 35 0 chr1 187590109 187590398 -94603266 - AluSx SINE Alu -9 303 5 457 292 71 26 chr1 187592932 187593199 -94600465 - MARNA DNA Mariner -173 413 135 219 69 0 0 chr1 187594112 187594141 -94599523 + (A)n Simple_repeat Simple_repeat 1 29 0 844 213 67 24 chr1 187595358 187595612 -94598052 + L1MC4 LINE L1 7355 7619 -423 303 284 134 8 chr1 187595616 187595743 -94597921 + L1MC4 LINE L1 7758 7900 -142 1285 174 94 30 chr1 187595889 187596179 -94597485 + AluJo SINE Alu 1 307 0 1980 140 0 3 chr1 187597063 187597356 -94596308 - AluJo SINE Alu -20 292 1 252 0 0 0 chr1 187599937 187599965 -94593699 + (A)n Simple_repeat Simple_repeat 1 28 0 1673 151 0 61 chr1 187600108 187600299 -94593365 - AluJo SINE Alu 0 312 146 2181 85 0 17 chr1 187600299 187600592 -94593072 - AluY SINE Alu -10 301 14 1673 151 0 61 chr1 187600592 187600711 -94592953 - AluJo SINE Alu -166 146 21 360 152 0 0 chr1 187601792 187601858 -94591806 + (CA)n Simple_repeat Simple_repeat 1 66 0 567 299 18 27 chr1 187602056 187602280 -94591384 + MIR SINE MIR 26 247 -15 310 286 57 73 chr1 187604180 187604372 -94589292 - MIR SINE MIR -48 214 26 206 214 24 0 chr1 187606840 187606882 -94586782 + GA-rich Low_complexity Low_complexity 2 44 0 1893 164 0 13 chr1 187607117 187607427 -94586237 - AluJb SINE Alu -6 306 1 632 283 0 12 chr1 187607928 187608094 -94585570 - MER5B DNA MER1_type -12 166 3 1170 133 7 137 chr1 187608341 187608612 -94585052 - MER46A DNA MER2_type 0 236 1 218 283 0 0 chr1 187608935 187608995 -94584669 - MIR3 SINE MIR -42 166 107 274 309 127 9 chr1 187609935 187610045 -94583619 + MLT2E LTR ERVL 37 159 -469 327 292 75 43 chr1 187610115 187610276 -94583388 + MLT2E LTR ERVL 409 574 -54 180 0 0 0 chr1 187610488 187610508 -94583156 + (TC)n Simple_repeat Simple_repeat 1 20 0 279 307 73 20 chr1 187611976 187612126 -94581538 - MIR SINE MIR -13 249 92 2398 84 46 6 chr1 187612516 187612862 -94580802 + L1PA13 LINE L1 5804 6163 0 894 129 0 0 chr1 187613777 187613909 -94579755 + FLAM_C SINE Alu 2 133 0 1907 144 24 0 chr1 187613969 187614260 -94579404 + AluSx SINE Alu 1 298 -14 228 35 0 0 chr1 187614261 187614290 -94579374 + (CAGAA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 187615019 187615041 -94578623 + AT_rich Low_complexity Low_complexity 1 22 0 1685 194 7 7 chr1 187615963 187616273 -94577391 + AluJb SINE Alu 1 310 -2 1398 158 59 22 chr1 187616396 187616668 -94576996 + L1MB2 LINE L1 5888 6169 -2 343 290 46 8 chr1 187616697 187616828 -94576836 - MIR SINE MIR -25 237 102 197 220 68 103 chr1 187617194 187617308 -94576356 - MIR SINE MIR -65 197 79 359 206 0 0 chr1 187618758 187618831 -94574833 - LTR30 LTR ERV1 -98 624 552 324 70 0 0 chr1 187619164 187619207 -94574457 - FRAM SINE Alu -66 100 58 258 237 68 0 chr1 187619223 187619282 -94574382 + MLT1J1 LTR MaLR 49 111 -335 387 227 92 42 chr1 187619284 187619403 -94574261 + MLT1J LTR MaLR 227 351 -160 2216 92 0 3 chr1 187619445 187619728 -94573936 + AluSc SINE Alu 12 293 -16 1037 185 96 98 chr1 187619735 187620091 -94573573 + MLT1A1 LTR MaLR 1 355 -10 786 269 15 39 chr1 187620836 187621096 -94572568 - MIR SINE MIR 0 262 9 2298 111 0 13 chr1 187621352 187621668 -94571996 - AluSx SINE Alu 0 312 1 441 0 0 0 chr1 187621942 187621991 -94571673 + (CA)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chr1 187622986 187623012 -94570652 + (TAA)n Simple_repeat Simple_repeat 2 27 0 547 207 15 37 chr1 187623103 187623238 -94570426 + L1MC1 LINE L1 4830 4961 -1185 6488 125 25 37 chr1 187623249 187623914 -94569750 + L1MC1 LINE L1 5165 5817 -516 2120 119 0 47 chr1 187623914 187624234 -94569430 + AluSg SINE Alu 1 305 -5 6488 125 25 37 chr1 187624234 187624746 -94568918 + L1MC1 LINE L1 5817 6333 0 1759 181 137 26 chr1 187624751 187625205 -94568459 + L1MD1 LINE L1 5600 6103 -139 429 139 38 0 chr1 187625215 187625294 -94568370 + L1MD2 LINE L1 6278 6359 0 248 130 152 0 chr1 187625406 187625452 -94568212 + MLT1C-int LTR MaLR 1305 1357 -14 1473 213 101 43 chr1 187625473 187625910 -94567754 + MLT1C LTR MaLR 6 467 0 2970 159 86 21 chr1 187626460 187627212 -94566452 + MER21A LTR ERV1 1 924 -7 215 350 141 0 chr1 187627253 187627430 -94566234 + MIR SINE MIR 47 248 -14 1940 175 138 17 chr1 187627872 187628278 -94565386 + LTR32 LTR ERVL 17 471 0 561 401 79 42 chr1 187628418 187629128 -94564536 - L2 LINE L2 -2390 924 189 265 296 148 6 chr1 187629865 187630034 -94563630 - L1MC4a LINE L1 -1898 5910 5718 275 236 42 0 chr1 187630070 187630142 -94563522 - L1MC4a LINE L1 -468 5653 5579 248 164 73 0 chr1 187630222 187630277 -94563387 - L1MC4a LINE L1 -2381 5427 5369 2177 132 0 3 chr1 187630279 187630582 -94563082 + AluSx SINE Alu 1 302 -10 285 250 52 35 chr1 187630636 187630812 -94562852 - L1MC4a LINE L1 -802 5344 5195 2064 114 10 3 chr1 187631538 187631827 -94561837 + AluSx SINE Alu 1 291 -21 227 167 24 0 chr1 187632164 187632206 -94561458 + L1MB3 LINE L1 4903 4945 -1201 227 167 24 0 chr1 187632279 187632321 -94561343 + L1MB3 LINE L1 4903 4945 -1201 842 186 6 148 chr1 187632394 187632705 -94560959 + L1MB3 LINE L1 4903 5169 -977 22 0 0 0 chr1 187632724 187632746 -94560918 + AT_rich Low_complexity Low_complexity 1 22 0 1087 156 97 34 chr1 187632756 187632994 -94560670 + AluJo SINE Alu 54 306 -6 1121 236 4 31 chr1 187632997 187633256 -94560408 + L1MB3 LINE L1 5432 5683 -500 15002 108 33 46 chr1 187633264 187635688 -94557976 + Tigger1 DNA MER2_type 24 2414 -4 2127 179 121 0 chr1 187635691 187636139 -94557525 + L1MB3 LINE L1 5681 6182 -1 470 244 113 63 chr1 187637366 187637627 -94556037 + L1ME4a LINE L1 5603 5850 -271 192 77 0 0 chr1 187637627 187637653 -94556011 + (TG)n Simple_repeat Simple_repeat 2 27 0 470 244 113 63 chr1 187637653 187637667 -94555997 + L1ME4a LINE L1 5850 5862 -259 1638 183 3 31 chr1 187637667 187637984 -94555680 + AluJo SINE Alu 1 308 -4 470 244 113 63 chr1 187637984 187638150 -94555514 + L1ME4a LINE L1 5862 6067 -54 1965 104 97 0 chr1 187638406 187638684 -94554980 + AluSq SINE Alu 1 305 -8 308 203 0 0 chr1 187640854 187640918 -94552746 + MIR SINE MIR 80 143 -119 2832 19 0 0 chr1 187640995 187641306 -94552358 - AluYa5 SINE Alu 0 311 1 1849 206 11 6 chr1 187641348 187641703 -94551961 + MLT1A1 LTR MaLR 1 357 -8 187 286 0 0 chr1 187842506 187842548 -94351116 - L2 LINE L2 -92 3180 3139 1988 106 0 4 chr1 187842673 187842947 -94350717 - AluSq SINE Alu -11 302 30 1357 277 101 2 chr1 187843060 187843475 -94350189 - MLT1G1 LTR MaLR -139 456 1 260 229 14 14 chr1 187843543 187843613 -94350051 + MIR SINE MIR 179 248 -14 297 75 0 0 chr1 187843652 187843692 -94349972 + (CAT)n Simple_repeat Simple_repeat 1 40 0 189 289 87 19 chr1 187843721 187843825 -94349839 - MIR SINE MIR -64 144 34 742 258 35 10 chr1 187844674 187844872 -94348792 - MIR SINE MIR -11 251 49 386 258 25 17 chr1 187845591 187845711 -94347953 - Zaphod DNA AcHobo 0 4031 3911 848 295 85 18 chr1 187845864 187846145 -94347519 - MER115 DNA AcHobo -367 326 27 931 218 109 19 chr1 187846200 187846411 -94347253 - MIR SINE MIR -28 234 5 493 302 106 3 chr1 187847137 187847357 -94346307 + MIR SINE MIR 17 256 -6 311 368 153 0 chr1 187847911 187848120 -94345544 + L2 LINE L2 2547 2787 -527 255 200 24 94 chr1 187848123 187848208 -94345456 - MLT1K LTR MaLR -2 586 508 234 188 10 125 chr1 187848208 187848219 -94345445 - LTR67 LTR ERVL -2 555 471 413 236 71 36 chr1 187848370 187848510 -94345154 - MLT1K LTR MaLR -304 284 140 358 350 77 36 chr1 187848587 187848861 -94344803 + L2 LINE L2 2807 3091 -181 990 220 29 41 chr1 187848921 187849166 -94344498 - MIR SINE MIR 0 262 21 256 270 0 0 chr1 187850074 187850127 -94343537 - MIR SINE MIR -14 248 193 1165 191 64 69 chr1 187850127 187850379 -94343285 + MER2 DNA MER2_type 1 252 -92 2242 86 0 13 chr1 187850379 187850680 -94342984 - AluSc SINE Alu -12 297 1 1165 191 64 69 chr1 187850680 187850773 -94342891 + MER2 DNA MER2_type 252 344 0 256 270 0 0 chr1 187850773 187850793 -94342871 - MIR SINE MIR -68 194 175 742 284 186 30 chr1 187850800 187851240 -94342424 - L2 LINE L2 -1 3312 2804 552 278 30 0 chr1 187851295 187851428 -94342236 - MIR SINE MIR -101 161 25 350 219 88 18 chr1 187851639 187851753 -94341911 + MIR SINE MIR 104 225 -37 230 176 44 103 chr1 187852080 187852148 -94341516 + L2 LINE L2 3238 3301 -12 215 256 12 12 chr1 187852743 187852825 -94340839 + (TTTA)n Simple_repeat Simple_repeat 3 84 0 217 296 12 12 chr1 187852907 187852988 -94340676 + MIR3 SINE MIR 2 82 -126 1257 145 32 41 chr1 187855001 187855222 -94338442 + MER20 DNA MER1_type 1 219 0 418 259 55 16 chr1 187855235 187855373 -94338291 - MIR SINE MIR -73 135 16 2125 100 0 17 chr1 187855528 187855827 -94337837 - AluSx SINE Alu -7 305 12 196 353 47 0 chr1 187856118 187856203 -94337461 + L3 LINE CR1 1289 1377 -200 542 280 86 30 chr1 187856857 187857089 -94336575 + MIR SINE MIR 17 261 -1 298 274 67 22 chr1 187858406 187858541 -94335123 - MIR SINE MIR -13 249 109 476 262 90 0 chr1 187858843 187858965 -94334699 - MIR3 SINE MIR -33 175 43 249 33 0 0 chr1 187859060 187859090 -94334574 + (TAA)n Simple_repeat Simple_repeat 1 30 0 192 208 94 75 chr1 187861422 187861475 -94332189 + L2 LINE L2 3216 3269 -3 182 211 211 0 chr1 187861486 187861538 -94332126 - MIR SINE MIR -81 181 119 517 208 40 40 chr1 187861721 187861870 -94331794 + MER117 DNA MER1_type 2 150 -47 349 333 76 8 chr1 187861922 187862054 -94331610 - MIR3 SINE MIR -49 159 19 198 298 21 64 chr1 187862126 187862220 -94331444 + MIR SINE MIR 109 198 -64 664 213 20 27 chr1 187863279 187863429 -94330235 + L2 LINE L2 3165 3313 0 460 249 178 27 chr1 187863430 187863615 -94330049 - L3 LINE CR1 -246 1331 1119 265 274 10 69 chr1 187863613 187863715 -94329949 - MIR3 SINE MIR -15 193 98 * 609 262 55 62 chr1 187863906 187864162 -94329502 - L2 LINE L2 -1 3271 3018 256 300 218 0 chr1 187865426 187865536 -94328128 - MIR SINE MIR -81 181 48 354 242 105 32 chr1 187865687 187865811 -94327853 - L2 LINE L2 -9 3304 3172 261 259 30 104 chr1 187866060 187866195 -94327469 - MIR SINE MIR -17 245 121 218 306 171 0 chr1 187867185 187867296 -94326368 + L2 LINE L2 3179 3308 -5 916 210 55 15 chr1 187867523 187867723 -94325941 + MIR SINE MIR 5 212 -50 357 344 39 39 chr1 187868047 187868326 -94325338 - L2 LINE L2 -527 2787 2509 299 263 21 21 chr1 187868343 187868438 -94325226 - MIR SINE MIR -4 258 164 347 21 0 21 chr1 187870463 187870511 -94323153 - L1P LINE L1 -2438 3708 3662 276 287 0 75 chr1 187872101 187872184 -94321480 - MIR SINE MIR -160 102 25 1891 122 0 14 chr1 187872184 187872471 -94321193 - AluJo SINE Alu -18 294 12 268 326 71 35 chr1 187872912 187873053 -94320611 + MIR SINE MIR 5 150 -112 3248 11 0 0 chr1 187873401 187873763 -94319901 - L1PA3 LINE L1 -211 5944 5583 260 0 0 0 chr1 187873761 187873823 -94319841 + L1PA2 LINE L1 6113 6174 0 * 348 290 40 16 chr1 187873892 187874016 -94319648 + MIR3 SINE MIR 75 201 -7 251 314 50 21 chr1 187874078 187874218 -94319446 + MIR SINE MIR 69 212 -50 289 302 81 0 chr1 187875029 187875115 -94318549 + L1MEd LINE L1 95 187 -5932 370 278 119 75 chr1 187875122 187875349 -94318315 + L1MEd LINE L1 2454 2690 -3439 773 139 22 58 chr1 187875353 187875490 -94318174 + AluJ SINE Alu 2 133 -179 387 0 0 0 chr1 187877202 187877245 -94316419 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 2096 84 15 0 chr1 187877245 187877518 -94316146 - AluSc SINE Alu -32 277 1 379 283 142 0 chr1 187879308 187879414 -94314250 + MIR3 SINE MIR 46 166 -42 439 279 75 31 chr1 187879811 187879972 -94313692 + MIR SINE MIR 2 169 -93 425 271 52 51 chr1 187880985 187881169 -94312495 + MIR SINE MIR 11 192 -63 227 249 158 28 chr1 187881858 187882004 -94311660 - MIR SINE MIR -57 205 38 880 187 7 0 chr1 187882723 187882873 -94310791 + AluJ SINE Alu 135 285 -27 21 0 0 0 chr1 187882884 187882905 -94310759 + AT_rich Low_complexity Low_complexity 1 21 0 378 305 168 0 chr1 187882905 187883087 -94310577 + MIR SINE MIR 19 233 -29 559 281 73 0 chr1 187883786 187883964 -94309700 + MIR SINE MIR 2 192 -70 606 341 68 85 chr1 187885261 187885674 -94307990 - L2 LINE L2 0 3272 2867 1606 138 23 4 chr1 187885695 187885955 -94307709 - AluSx SINE Alu -8 304 40 1195 327 187 20 chr1 187885955 187886858 -94306806 - L2 LINE L2 -525 2789 1736 228 323 106 31 chr1 187887299 187887525 -94306139 + L2 LINE L2 2819 3061 -211 31 58 0 0 chr1 187890815 187890867 -94302797 + GC_rich Low_complexity Low_complexity 1 52 0 205 256 0 33 chr1 187891167 187891257 -94302407 + (CGG)n Simple_repeat Simple_repeat 2 88 0 186 43 0 0 chr1 187891258 187891281 -94302383 + (CCG)n Simple_repeat Simple_repeat 3 25 0 203 133 0 0 chr1 187891355 187891385 -94302279 + (CGG)n Simple_repeat Simple_repeat 2 31 0 289 318 198 0 chr1 187892512 187892638 -94301026 - L2 LINE L2 -5 3267 3117 2126 153 27 5 chr1 187893044 187893416 -94300248 - L1MD3 LINE L1 -170 7825 7446 1120 126 27 11 chr1 187893421 187893604 -94300060 - L1PA15 LINE L1 -6 6159 5974 260 325 188 0 chr1 187894903 187895020 -94298644 + L2 LINE L2 3133 3271 -1 245 312 55 37 chr1 187895664 187895773 -94297891 + L3b LINE CR1 1389 1499 -84 219 310 151 35 chr1 187896200 187896597 -94297067 + L2 LINE L2 2063 2505 -809 392 248 143 0 chr1 187896898 187897031 -94296633 - MIR SINE MIR -60 202 51 275 225 28 28 chr1 187897448 187897519 -94296145 + CT-rich Low_complexity Low_complexity 1 71 0 204 261 0 0 chr1 187897716 187897762 -94295902 + L2 LINE L2 3244 3289 -24 479 270 158 26 chr1 187897815 187897967 -94295697 - MER5A DNA MER1_type 0 189 18 204 250 0 67 chr1 187897944 187898004 -94295660 + MER5A DNA MER1_type 9 64 -125 * 501 300 109 35 chr1 187898145 187898375 -94295289 + MIR SINE MIR 9 255 -7 22 88 0 0 chr1 187899029 187899086 -94294578 + AT_rich Low_complexity Low_complexity 1 57 0 267 79 0 0 chr1 187899261 187899299 -94294365 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 276 289 67 22 chr1 187899300 187899390 -94294274 - L2 LINE L2 -21 3251 3158 531 262 35 7 chr1 187899530 187899671 -94293993 + L2 LINE L2 3169 3313 0 1521 193 96 17 chr1 187900131 187900550 -94293114 + MLT1C LTR MaLR 10 461 -6 649 314 30 79 chr1 187900789 187901442 -94292222 + L2 LINE L2 2550 3158 -155 2218 111 0 10 chr1 187901442 187901740 -94291924 - AluSq SINE Alu -18 295 1 649 314 30 79 chr1 187901740 187901889 -94291775 + L2 LINE L2 3158 3313 0 208 295 49 0 chr1 187902957 187903018 -94290646 + MIR SINE MIR 75 138 -70 1782 183 0 13 chr1 187904263 187904564 -94289100 - AluJo SINE Alu -13 299 3 512 278 31 11 chr1 187904838 187905029 -94288635 - L1MEc LINE L1 -6165 231 37 191 322 17 17 chr1 187906119 187906178 -94287486 + L2 LINE L2 3209 3267 -5 691 313 50 23 chr1 187906449 187906711 -94286953 + LTR67 LTR ERVL 30 298 -259 633 277 32 5 chr1 187906737 187906925 -94286739 + LTR67 LTR ERVL 363 555 -2 183 241 96 0 chr1 187907167 187907250 -94286414 + L2 LINE L2 2401 2491 -823 577 295 78 94 chr1 187907473 187907920 -94285744 + L2 LINE L2 2809 3248 -24 188 253 241 11 chr1 187908814 187908901 -94284763 + MIR SINE MIR 47 153 -109 1229 201 70 23 chr1 187908967 187909348 -94284316 - MLT1C LTR MaLR -3 464 1 837 225 76 32 chr1 187910149 187910407 -94283257 + MLT1H LTR MaLR 217 493 -56 189 0 0 0 chr1 187910407 187910428 -94283236 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 837 225 76 32 chr1 187910428 187910484 -94283180 + MLT1H LTR MaLR 493 545 -4 263 247 14 0 chr1 187910708 187910781 -94282883 - MLT1J2 LTR MaLR -27 423 350 488 219 10 0 chr1 187910824 187910920 -94282744 - MLT1H LTR MaLR -195 354 258 1151 179 29 89 chr1 187910963 187911108 -94282556 + MLT2B1 LTR ERVL 1 118 -402 1931 160 7 0 chr1 187911108 187911408 -94282256 + AluJb SINE Alu 1 302 -10 1151 179 29 89 chr1 187911408 187911575 -94282089 + MLT2B1 LTR ERVL 118 294 -226 868 114 60 0 chr1 187911577 187911726 -94281938 + L1P5 LINE L1 5644 5801 -350 210 154 0 0 chr1 187911749 187911788 -94281876 + (TA)n Simple_repeat Simple_repeat 1 39 0 332 300 0 0 chr1 187911788 187911878 -94281786 - L1MC4 LINE L1 -1339 6703 6614 2539 103 0 5 chr1 187911896 187912264 -94281400 + L1PB1 LINE L1 5785 6150 -1 412 265 100 79 chr1 187912923 187913342 -94280322 - MLT1H LTR MaLR -4 545 118 312 243 17 67 chr1 187913972 187914122 -94279542 + MLT1H LTR MaLR 1 192 -357 351 255 90 28 chr1 187914337 187914482 -94279182 + MLT1H LTR MaLR 396 549 0 314 318 104 0 chr1 187915337 187915491 -94278173 - MIR3 SINE MIR -3 205 36 256 163 0 0 chr1 187915749 187915792 -94277872 - L2 LINE L2 0 3313 3271 976 240 47 65 chr1 187916030 187916368 -94277296 - MER102b DNA MER1_type -1 340 9 1822 151 4 11 chr1 187916703 187916982 -94276682 + AluJb SINE Alu 9 285 -27 343 102 71 10 chr1 187916982 187917080 -94276584 + (TA)n Simple_repeat Simple_repeat 1 104 0 618 320 152 33 chr1 187917289 187917683 -94275981 - L2 LINE L2 0 3313 2873 216 327 126 27 chr1 187917929 187918152 -94275512 - L2 LINE L2 -694 2620 2376 363 305 53 0 chr1 187918623 187918718 -94274946 - L2 LINE L2 -2 3270 3171 2202 64 0 0 chr1 187918833 187919113 -94274551 + L1PA8 LINE L1 5887 6166 -6 1704 158 0 0 chr1 187919142 187919401 -94274263 + AluJb SINE Alu 36 294 -18 2354 69 23 3 chr1 187919498 187919803 -94273861 + AluY SINE Alu 1 311 0 213 284 12 74 chr1 187920163 187920244 -94273420 + MIR SINE MIR 114 189 -73 710 287 17 0 chr1 187920378 187920559 -94273105 + MIR SINE MIR 60 243 -19 486 61 0 0 chr1 187920895 187920961 -94272703 + (CCAA)n Simple_repeat Simple_repeat 2 67 0 200 357 75 30 chr1 187920989 187921188 -94272476 + L2 LINE L2 1750 1957 -1357 364 265 235 7 chr1 187921900 187922036 -94271628 + MIR3 SINE MIR 15 181 -27 23 0 0 0 chr1 187922691 187922714 -94270950 + AT_rich Low_complexity Low_complexity 1 23 0 611 262 99 50 chr1 187922733 187922788 -94270876 + HAL1 LINE L1 1402 1453 -1054 578 161 193 19 chr1 187922788 187922949 -94270715 - MER53 DNA DNA 0 189 1 611 262 99 50 chr1 187922949 187923236 -94270428 + HAL1 LINE L1 1453 1761 -746 366 265 155 30 chr1 187923316 187923667 -94269997 - MLT1L LTR MaLR -14 574 171 651 309 43 16 chr1 187923672 187923928 -94269736 - L2 LINE L2 -23 3290 3028 326 269 21 35 chr1 187924041 187924186 -94269478 + HAL1 LINE L1 2011 2153 -354 237 236 76 49 chr1 187924600 187924744 -94268920 + HAL1 LINE L1 2355 2502 -5 205 224 172 0 chr1 187925112 187925170 -94268494 - MIR SINE MIR -78 130 63 301 315 46 30 chr1 187925260 187925457 -94268207 + L2 LINE L2 2817 3016 -256 982 268 12 16 chr1 187925565 187925819 -94267845 + MIR SINE MIR 10 262 0 1192 240 116 102 chr1 187927480 187928050 -94265614 + MLT1K LTR MaLR 5 582 -6 182 303 174 28 chr1 187928312 187928421 -94265243 - L2 LINE L2 -1 3271 3147 182 269 130 46 chr1 187928871 187928979 -94264685 - MIR SINE MIR -58 150 34 258 301 83 88 chr1 187929198 187929414 -94264250 + L2 LINE L2 2763 2977 -337 208 278 9 65 chr1 187929739 187929847 -94263817 + L2 LINE L2 2903 3004 -268 252 229 0 29 chr1 187929925 187929995 -94263669 + (CTATT)n Simple_repeat Simple_repeat 3 70 0 568 350 21 58 chr1 187930071 187930362 -94263302 + L2 LINE L2 2985 3264 -8 1817 174 0 7 chr1 187930484 187930789 -94262875 + AluJb SINE Alu 1 303 -9 188 65 0 32 chr1 187931272 187931303 -94262361 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1327 127 4 83 chr1 187931627 187931855 -94261809 - AluJo SINE Alu -16 296 87 720 224 11 52 chr1 187932614 187932788 -94260876 - MIR SINE MIR -40 222 56 241 221 73 0 chr1 187933148 187933216 -94260448 - L1P2 LINE L1 -319 5835 5763 3560 164 7 37 chr1 187933352 187934006 -94259658 - L1MB7 LINE L1 -66 6118 5487 2209 100 3 27 chr1 187934006 187934307 -94259357 - AluSx SINE Alu -18 294 1 3560 164 7 37 chr1 187934307 187934389 -94259275 - L1MB7 LINE L1 -697 5487 5404 1601 185 68 7 chr1 187934391 187934819 -94258845 - L1MB7 LINE L1 -2191 3955 3502 1821 103 28 7 chr1 187934819 187935101 -94258563 + MLT2A1 LTR ERVL 1 288 -156 22879 42 2 0 chr1 187935780 187939385 -94254279 - L1PA3 LINE L1 -8 6147 2535 579 275 94 29 chr1 187939389 187939865 -94253799 - L1MEc LINE L1 -4013 2550 2044 532 290 30 5 chr1 187940167 187940367 -94253297 - L1MEc LINE L1 -4537 1847 1643 10194 174 22 19 chr1 187940391 187942274 -94251390 - L1PB4 LINE L1 -9 6849 4952 2158 129 0 0 chr1 187942274 187942584 -94251080 - AluSx SINE Alu -2 310 1 10194 174 22 19 chr1 187942584 187943935 -94249729 - L1PB4 LINE L1 -1906 4952 3607 1232 115 5 0 chr1 187943931 187944123 -94249541 + L1MA2 LINE L1 6112 6304 0 4430 216 39 6 chr1 187944167 187945392 -94248272 - L1PB4 LINE L1 -3972 2877 1612 5639 117 10 6 chr1 187945411 187946987 -94246677 - L1PA15 LINE L1 -4 7599 6019 727 153 0 0 chr1 187946987 187947104 -94246560 + L1MA1 LINE L1 6185 6302 0 9795 209 17 10 chr1 187947114 187947678 -94245986 - L1PA15 LINE L1 -1547 6037 5479 276 100 0 0 chr1 187947678 187947718 -94245946 + (TG)n Simple_repeat Simple_repeat 2 41 0 9795 209 17 10 chr1 187947718 187949514 -94244150 - L1PA15 LINE L1 -2105 5479 3659 1684 171 6 4 chr1 187949522 187949938 -94243726 - L1PA15 LINE L1 -4391 3193 2778 7551 30 0 0 chr1 187949953 187951013 -94242651 - L1PA3 LINE L1 0 6155 5102 8536 37 0 0 chr1 187951015 187952093 -94241571 + L1P LINE L1 3286 4363 -1783 21131 171 17 16 chr1 187952153 187957872 -94235792 - L1PA11 LINE L1 0 7612 1099 1724 180 0 0 chr1 187957871 187958194 -94235470 + L1P LINE L1 2503 2825 -3321 * 4581 206 36 20 chr1 187958183 187959230 -94234434 - L1PA11 LINE L1 -6511 1070 7 1682 207 39 0 chr1 187959238 187959654 -94234010 - L1PA13 LINE L1 -4824 2750 2319 341 359 14 39 chr1 187960245 187960604 -94233060 - L1PA13 LINE L1 -7231 350 1 2077 253 16 11 chr1 187960605 187961151 -94232513 - L1M2 LINE L1 -5231 1618 1070 355 335 93 46 chr1 187961552 187961746 -94231918 - L1M2 LINE L1 -6062 787 585 335 333 8 54 chr1 187961804 187961933 -94231731 - L1M2 LINE L1 -6062 787 665 1060 314 41 9 chr1 187962031 187962467 -94231197 - L1M2 LINE L1 -6399 450 1 * 1794 226 47 23 chr1 187962466 187963068 -94230596 - L1M4b LINE L1 -4728 2231 1616 * 4958 162 54 8 chr1 187963064 187964084 -94229580 - L1MC1 LINE L1 0 6333 5267 3245 29 0 0 chr1 187964120 187964503 -94229161 - L1PA4 LINE L1 -3 6152 5770 846 71 0 14 chr1 187964503 187964518 -94229146 - L1P LINE L1 -2886 3260 3246 17860 38 2 0 chr1 187964518 187967468 -94226196 - L1PA3 LINE L1 -2 6153 3199 846 71 0 14 chr1 187967468 187967593 -94226071 - L1P LINE L1 -2900 3246 3122 40853 33 21 1 chr1 187967597 187973628 -94220036 - L1HS LINE L1 0 6155 2 24220 51 0 2 chr1 187973622 187976772 -94216892 - L1PA3 LINE L1 -3001 3145 1 * 2081 134 7 0 chr1 187976774 187977073 -94216591 - AluSg SINE Alu -9 301 1 4083 228 63 68 chr1 187977074 187977210 -94216454 - L1M4b LINE L1 -5229 1630 1495 2160 163 3 0 chr1 187977210 187977572 -94216092 + MER47A DNA MER2_type 1 363 -3 4083 228 63 68 chr1 187977572 187978798 -94214866 - L1M4b LINE L1 -5364 1495 275 286 304 10 10 chr1 187978865 187978967 -94214697 - L1M4b LINE L1 -6591 268 167 417 313 48 27 chr1 187979298 187979445 -94214219 + L2 LINE L2 2910 3059 -254 714 287 12 12 chr1 187979445 187979689 -94213975 - LTR16B LTR ERVL 0 464 221 6090 228 31 95 chr1 187979737 187979946 -94213718 - L1M4c LINE L1 -4161 3007 2786 387 56 0 0 chr1 187979946 187980000 -94213664 + (TA)n Simple_repeat Simple_repeat 2 55 0 6090 228 31 95 chr1 187980000 187983249 -94210415 - L1M4c LINE L1 -4382 2786 7 373 302 48 55 chr1 187983249 187983524 -94210140 - L1M4 LINE L1 -1574 4572 4303 447 307 69 42 chr1 187983712 187984335 -94209329 - L1M4 LINE L1 -1828 4318 3679 732 330 84 66 chr1 187984429 187985652 -94208012 - L1M4 LINE L1 -2582 3564 2320 2119 127 14 0 chr1 187985758 187986042 -94207622 - AluSx SINE Alu -24 288 1 1164 205 45 61 chr1 187986149 187986517 -94207147 + L1MD3 LINE L1 7044 7623 -372 2090 103 57 4 chr1 187986631 187986912 -94206752 - AluSg SINE Alu -14 296 1 1528 134 90 30 chr1 187987167 187987462 -94206202 + AluJo SINE Alu 1 311 0 3585 184 74 29 chr1 187987468 187988500 -94205164 - L1MB8 LINE L1 -6 6172 5074 1805 178 0 28 chr1 187988500 187988821 -94204843 + AluJb SINE Alu 1 312 0 3585 184 74 29 chr1 187988821 187988972 -94204692 - L1MB8 LINE L1 -1104 5074 4931 278 298 45 22 chr1 187989121 187989299 -94204365 - HAL1 LINE L1 -962 1545 1364 4266 30 0 0 chr1 187990167 187990704 -94202960 - L1PA3 LINE L1 -3394 2752 2216 21752 31 0 1 chr1 187990704 187994111 -94199553 + L1PA3 LINE L1 2753 6155 0 276 302 69 48 chr1 187994206 187994395 -94199269 + L2 LINE L2 3121 3313 0 229 25 0 50 chr1 187994679 187994719 -94198945 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2170 164 16 19 chr1 187995361 187995727 -94197937 - MLT1A1 LTR MaLR 0 365 1 394 238 152 52 chr1 187995780 187995990 -94197674 - L2 LINE L2 -80 3233 3003 1685 210 0 6 chr1 187996152 187996466 -94197198 + AluJo SINE Alu 1 312 0 332 301 44 9 chr1 187996488 187996601 -94197063 + MER20 DNA MER1_type 103 219 0 375 261 35 25 chr1 187996627 187996855 -94196809 - MLT1K LTR MaLR -280 308 5 192 322 87 47 chr1 187996862 187997011 -94196653 - L2 LINE L2 -447 2867 2713 210 321 73 53 chr1 187997423 187997725 -94195939 - L3 LINE CR1 -877 700 393 2962 159 37 59 chr1 187997789 187998417 -94195247 - L1MB2 LINE L1 -8 6163 5550 5001 106 1 1 chr1 187998430 187999092 -94194572 - L1PA13 LINE L1 -19 6144 5483 9370 143 24 5 chr1 188001262 188002990 -94190674 - L1PA13 LINE L1 -651 5523 3765 1859 163 2 32 chr1 188002984 188003421 -94190243 - L1MB2 LINE L1 -619 5564 5141 * 340 288 88 0 chr1 188003710 188003835 -94189829 - MIR SINE MIR -51 211 76 341 288 13 28 chr1 188004013 188004153 -94189511 - MIR SINE MIR -38 170 31 675 266 28 23 chr1 188004322 188004541 -94189123 + MIR SINE MIR 44 262 0 2538 71 0 0 chr1 188004654 188004965 -94188699 + AluY SINE Alu 1 311 0 1300 273 44 63 chr1 188005021 188005542 -94188122 - MLT1J LTR MaLR 0 511 1 188 230 243 27 chr1 188006227 188006301 -94187363 + L2 LINE L2 3173 3262 -10 432 229 51 57 chr1 188007236 188007393 -94186271 + MER5A DNA MER1_type 12 167 -22 313 312 0 13 chr1 188008034 188008111 -94185553 - L2 LINE L2 -21 3251 3176 22 0 0 0 chr1 188008149 188008171 -94185493 + AT_rich Low_complexity Low_complexity 1 22 0 229 304 39 20 chr1 188008287 188008389 -94185275 - MIR3 SINE MIR -7 201 98 234 306 14 0 chr1 188008496 188008568 -94185096 - MIR3 SINE MIR -17 191 119 1090 305 91 11 chr1 188008834 188009296 -94184368 - MLT1L LTR MaLR 0 615 117 356 233 124 143 chr1 188009486 188009744 -94183920 + MIR SINE MIR 6 258 -4 453 97 0 0 chr1 188011662 188011734 -94181930 + (TC)n Simple_repeat Simple_repeat 1 72 0 504 232 56 16 chr1 188011991 188012116 -94181548 - Charlie8 DNA MER1_type -2153 264 135 247 231 0 0 chr1 188012172 188012224 -94181440 - Charlie8 DNA MER1_type -2290 127 76 594 265 69 15 chr1 188012577 188012781 -94180883 + MIR SINE MIR 46 260 -2 764 192 9 2 chr1 188012811 188013024 -94180640 + MER46C DNA MER2_type 79 328 -10 251 237 43 11 chr1 188013147 188013240 -94180424 - L2 LINE L2 -224 3048 2953 248 276 105 0 chr1 188013699 188013775 -94179889 - L2 LINE L2 -578 2736 2653 494 337 49 5 chr1 188014688 188014893 -94178771 - MIR SINE MIR -28 234 21 583 181 24 39 chr1 188016147 188016274 -94177390 + L1MB5 LINE L1 6050 6174 0 220 267 267 20 chr1 188016948 188017098 -94176566 - MIR3 SINE MIR -10 198 12 * 349 254 26 35 chr1 188017069 188017183 -94176481 + MIR SINE MIR 65 177 -85 2891 90 34 3 chr1 188017302 188017689 -94175975 + L1PA10 LINE L1 5766 6164 -4 503 244 15 0 chr1 188018041 188018176 -94175488 + MER69 DNA AcHobo 2390 2526 0 22 0 0 0 chr1 188018594 188018616 -94175048 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr1 188019993 188020017 -94173647 + (T)n Simple_repeat Simple_repeat 1 24 0 2258 72 0 23 chr1 188020742 188021048 -94172616 - AluY SINE Alu -12 299 1 613 308 106 12 chr1 188021291 188021613 -94172051 + L1MEd LINE L1 132 483 -5722 318 349 33 33 chr1 188021795 188022036 -94171628 + L1MEd LINE L1 683 923 -5282 636 272 127 0 chr1 188022038 188022251 -94171413 - MIR SINE MIR -9 253 14 518 258 115 36 chr1 188022251 188022503 -94171161 + MLT1J LTR MaLR 1 272 -239 1289 203 54 0 chr1 188022600 188022876 -94170788 - AluJo SINE Alu -19 293 3 262 276 43 69 chr1 188022982 188023098 -94170566 + MLT1J LTR MaLR 342 454 -57 240 333 0 0 chr1 188023153 188023225 -94170439 - tRNA-Gly-GGA tRNA tRNA -3 72 1 1961 176 6 3 chr1 188023886 188024243 -94169421 + L1 LINE L1 3927 4284 -1862 2144 113 3 0 chr1 188025144 188025426 -94168238 + AluSq SINE Alu 3 285 -28 2009 124 3 14 chr1 188025698 188025988 -94167676 + AluSg SINE Alu 3 289 -21 1377 185 62 0 chr1 188026439 188026682 -94166982 - AluJb SINE Alu -46 266 9 21 36 0 0 chr1 188026890 188026918 -94166746 + AT_rich Low_complexity Low_complexity 1 28 0 378 240 71 31 chr1 188026922 188027118 -94166546 + HAL1b LINE L1 647 850 -498 411 209 222 102 chr1 188027283 188027508 -94166156 - MLT1E1 LTR MaLR -393 261 10 366 259 222 5 chr1 188027772 188027988 -94165676 - L2 LINE L2 -473 2841 2579 2453 77 0 6 chr1 188028314 188028625 -94165039 + AluSg SINE Alu 1 309 -1 2082 201 68 27 chr1 188028692 188029175 -94164489 + MLT1D LTR MaLR 1 503 -2 619 286 61 0 chr1 188029230 188029377 -94164287 + L2 LINE L2 3103 3258 -14 1372 182 83 4 chr1 188029518 188029782 -94163882 - MSTB LTR MaLR 0 426 142 3557 209 44 59 chr1 188029883 188030721 -94162943 + L1MEd LINE L1 1161 2010 -4205 2471 73 0 10 chr1 188030721 188031034 -94162630 - AluY SINE Alu -1 310 1 3557 209 44 59 chr1 188031034 188032157 -94161507 + L1MEd LINE L1 2010 3003 -3212 2152 88 4 4 chr1 188032159 188032433 -94161231 + AluY SINE Alu 1 274 -37 235 299 65 19 chr1 188033498 188033605 -94160059 + MER5A DNA MER1_type 76 187 -2 * 407 277 30 0 chr1 188033512 188033613 -94160051 - MER5A DNA MER1_type -77 112 9 588 261 8 72 chr1 188033614 188033863 -94159801 + L1M4 LINE L1 5391 5623 -555 339 213 46 19 chr1 188034011 188034119 -94159545 + MIR SINE MIR 100 210 -52 402 264 47 27 chr1 188034462 188034610 -94159054 + MIR SINE MIR 92 242 -20 1308 135 0 5 chr1 188034688 188034880 -94158784 + AluSx SINE Alu 3 193 -119 325 176 0 0 chr1 188034880 188034931 -94158733 + AluS SINE Alu 20 70 -233 17606 75 1 2 chr1 188035031 188037356 -94156308 + L1P LINE L1 782 3103 -3043 625 165 152 6 chr1 188040358 188040522 -94153142 + ORSL DNA AcHobo 1 188 -87 1857 125 4 0 chr1 188040580 188040860 -94152804 - L1MA4 LINE L1 -6 6294 6014 419 122 256 0 chr1 188040860 188040942 -94152722 + ORSL DNA AcHobo 173 275 0 449 266 48 43 chr1 188042320 188042508 -94151156 + MER90 LTR ERV1 425 613 -1 208 321 0 0 chr1 188042523 188042579 -94151085 + MIR SINE MIR 156 211 -51 290 340 53 40 chr1 188042607 188042757 -94150907 + L2 LINE L2 3116 3267 -5 3245 219 31 30 chr1 188044145 188045025 -94148639 - L1MB8 LINE L1 0 6178 5298 323 283 140 82 chr1 188045146 188045244 -94148420 + HAL1 LINE L1 3 94 -2413 2220 82 44 0 chr1 188045244 188045537 -94148127 + AluY SINE Alu 2 307 -4 323 283 140 82 chr1 188045537 188045852 -94147812 + HAL1 LINE L1 94 432 -2075 228 67 0 0 chr1 188046661 188046691 -94146973 + (A)n Simple_repeat Simple_repeat 1 30 0 218 208 104 0 chr1 188046816 188046864 -94146800 - L2 LINE L2 0 3313 3261 28 29 0 0 chr1 188047395 188047430 -94146234 + AT_rich Low_complexity Low_complexity 1 35 0 324 231 67 10 chr1 188047474 188047578 -94146086 + MLT1I LTR MaLR 12 121 -288 244 279 8 85 chr1 188047684 188047813 -94145851 - MER94 DNA DNA -15 119 1 487 376 70 32 chr1 188047895 188048238 -94145426 - L2 LINE L2 0 3272 2917 2349 48 14 3 chr1 188048319 188048608 -94145056 + AluY SINE Alu 2 293 -18 357 33 98 16 chr1 188048803 188048864 -94144800 - L1MC1 LINE L1 0 6333 6268 472 188 59 10 chr1 188048864 188048965 -94144699 + MER44D DNA MER2_type 4 379 -230 984 231 12 31 chr1 188049401 188049656 -94144008 - MIR SINE MIR -1 261 12 257 309 35 23 chr1 188049895 188050151 -94143513 - L1M4 LINE L1 -2222 3924 3666 222 62 0 0 chr1 188050425 188050457 -94143207 + (TG)n Simple_repeat Simple_repeat 2 33 0 227 196 0 22 chr1 188051576 188051622 -94142042 + GA-rich Low_complexity Low_complexity 1 45 0 314 146 0 0 chr1 188052667 188052715 -94140949 - MLT1I LTR MaLR 0 409 362 16234 52 2 0 chr1 188052815 188054980 -94138684 + L1P LINE L1 1380 3549 -2597 20310 114 11 13 chr1 188055080 188058757 -94134907 + L1P3 LINE L1 744 4426 -2035 467 45 0 15 chr1 188058857 188058923 -94134741 + L1PA8 LINE L1 5439 5503 -669 * 10506 40 0 4 chr1 188058902 188060289 -94133375 - L1PA4 LINE L1 -2483 3663 2282 13533 42 17 0 chr1 188060289 188062738 -94130926 + L1PA4 LINE L1 3667 6149 -6 5478 63 0 0 chr1 188062741 188063439 -94130225 + L1PA8 LINE L1 5475 6172 0 2810 159 6 6 chr1 188063439 188063968 -94129696 + L1MA6 LINE L1 5769 6297 -3 496 179 9 57 chr1 188063988 188064094 -94129570 - MER5A DNA MER1_type -80 109 9 1979 166 0 3 chr1 188064128 188064441 -94129223 - AluJo SINE Alu 0 312 1 1353 192 3 52 chr1 188064520 188064811 -94128853 + AluJo SINE Alu 24 300 -12 1676 148 7 7 chr1 188064959 188065229 -94128435 - AluJb SINE Alu -16 296 27 5233 101 5 26 chr1 188065329 188066197 -94127467 - L1P LINE L1 -843 5303 4455 699 94 19 0 chr1 188066196 188066302 -94127362 - L1M2 LINE L1 -530 5761 5654 * 2000 133 28 28 chr1 188066302 188066654 -94127010 - THE1B LTR MaLR -12 352 1 2362 130 2 8 chr1 188066654 188067093 -94126571 - L1M2 LINE L1 -650 5650 5214 1062 141 54 0 chr1 188067099 188067283 -94126381 + MSTA LTR MaLR 235 428 0 5618 176 29 19 chr1 188067283 188068544 -94125120 - L1M2 LINE L1 -1475 4671 3398 3209 209 37 6 chr1 188068547 188069362 -94124302 + L1 LINE L1 2435 3274 -2872 * 5978 25 4 0 chr1 188069359 188070094 -94123570 - L1PA3 LINE L1 -1354 4792 4055 6693 100 2 32 chr1 188070094 188071471 -94122193 + L1PA3 LINE L1 4802 6152 -3 835 121 0 7 chr1 188071478 188071627 -94122037 + L1 LINE L1 3259 3406 -2740 719 155 0 0 chr1 188071673 188071802 -94121862 - L1MA3 LINE L1 0 6305 6177 3851 92 12 23 chr1 188071803 188072378 -94121286 - L1PA13 LINE L1 -2 6161 5593 548 78 0 0 chr1 188072378 188072453 -94121211 - L1PA5 LINE L1 0 6154 6078 1106 90 0 0 chr1 188072454 188072609 -94121055 - L1PA13 LINE L1 -544 5619 5465 622 272 148 60 chr1 188073244 188073608 -94120056 + L2 LINE L2 2914 3309 -4 267 140 0 0 chr1 188073608 188073658 -94120006 + (AATTG)n Simple_repeat Simple_repeat 3 52 0 2462 239 114 31 chr1 188073712 188074647 -94119017 + L2 LINE L2 1642 2654 -660 470 199 0 110 chr1 188074927 188075118 -94118546 + LTR12 LTR ERV1 283 452 -262 882 263 91 43 chr1 188075167 188075785 -94117879 + L2 LINE L2 2657 3312 -1 381 272 35 26 chr1 188075924 188076038 -94117626 + MIR3 SINE MIR 91 205 -3 252 345 0 0 chr1 188076106 188076193 -94117471 - L2 LINE L2 0 3272 3186 235 373 111 28 chr1 188077222 188077611 -94116053 - L2 LINE L2 -2 3311 2891 254 330 64 0 chr1 188077703 188077797 -94115867 - L2 LINE L2 -527 2787 2688 479 270 14 34 chr1 188078284 188078432 -94115232 - MIR3 SINE MIR -3 205 61 298 309 158 27 chr1 188078406 188078704 -94114960 - L2 LINE L2 -905 2409 2073 * 248 297 242 23 chr1 188078696 188078824 -94114840 + MIR SINE MIR 96 251 -11 * 184 331 57 25 chr1 188078840 188078997 -94114667 - L2 LINE L2 -1189 2125 1964 1210 26 13 33 chr1 188080769 188080921 -94112743 + AluY SINE Alu 143 291 -20 368 333 29 23 chr1 188081395 188081569 -94112095 + MIR3 SINE MIR 33 207 -1 215 213 21 0 chr1 188081762 188081809 -94111855 + L2 LINE L2 3264 3311 -2 3576 140 2 6 chr1 188083060 188083589 -94110075 + MER1A DNA MER1_type 1 527 0 192 204 136 0 chr1 188083740 188083784 -94109880 - L3b LINE CR1 -6 1577 1528 560 227 43 76 chr1 188083816 188084001 -94109663 + MER5A DNA MER1_type 11 189 0 531 323 71 15 chr1 188084002 188084268 -94109396 - L3 LINE CR1 -80 1497 1217 43 0 0 0 chr1 188084434 188084477 -94109187 + AT_rich Low_complexity Low_complexity 1 43 0 355 323 181 7 chr1 188085417 188085572 -94108092 + L3 LINE CR1 1389 1570 -7 205 328 0 0 chr1 188085607 188085668 -94107996 - MIR SINE MIR -21 241 181 23 0 0 0 chr1 188085953 188085976 -94107688 + AT_rich Low_complexity Low_complexity 1 23 0 912 166 10 10 chr1 188086016 188086209 -94107455 + L1MA6 LINE L1 6108 6300 0 199 351 69 8 chr1 188086431 188086562 -94107102 + MIR SINE MIR 113 251 -11 1943 100 147 22 chr1 188086821 188087141 -94106523 + THE1B LTR MaLR 1 360 -4 10855 90 12 2 chr1 188087145 188088649 -94105015 + THE1B-int LTR MaLR 1 1519 -61 412 188 47 0 chr1 188088649 188088734 -94104930 + THE1B LTR MaLR 276 364 0 219 321 90 37 chr1 188088942 188089076 -94104588 + L2 LINE L2 3115 3255 -17 183 80 0 0 chr1 188089081 188089106 -94104558 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 1432 192 47 0 chr1 188089673 188089991 -94103673 - MER63B DNA MER1_type -101 335 3 242 368 48 8 chr1 188091801 188091926 -94101738 + L2 LINE L2 2717 2846 -468 805 282 41 0 chr1 188091953 188092173 -94101491 - MIR SINE MIR -22 240 12 199 290 140 38 chr1 188092153 188092339 -94101325 + L2 LINE L2 2860 3064 -208 * 321 350 0 14 chr1 188092676 188092819 -94100845 + MIR SINE MIR 14 154 -108 1247 294 70 59 chr1 188092884 188093521 -94100143 + L2 LINE L2 2389 3035 -278 195 186 0 0 chr1 188093558 188093601 -94100063 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 333 43 0 chr1 188093601 188093739 -94099925 + L2 LINE L2 3170 3313 0 324 280 59 34 chr1 188093797 188093915 -94099749 - L2 LINE L2 0 3313 3193 263 316 31 10 chr1 188094075 188094173 -94099491 + MIR SINE MIR 46 145 -63 3660 253 69 32 chr1 188094184 188096039 -94097625 + L1M4c LINE L1 9 1492 -4480 21 36 0 0 chr1 188096041 188096069 -94097595 + AT_rich Low_complexity Low_complexity 1 28 0 459 0 37 105 chr1 188096075 188096336 -94097328 + (TA)n Simple_repeat Simple_repeat 1 243 0 365 78 39 67 chr1 188096340 188096519 -94097145 + (CTATA)n Simple_repeat Simple_repeat 2 175 0 290 50 61 77 chr1 188096567 188096748 -94096916 + (TA)n Simple_repeat Simple_repeat 1 178 0 6391 230 34 8 chr1 188096775 188098828 -94094836 + L1M4c LINE L1 1613 3722 -2248 1883 156 20 12 chr1 188098823 188099590 -94094074 + L1M2 LINE L1 4875 5681 -610 * 2198 67 25 28 chr1 188099696 188099979 -94093685 - AluY SINE Alu -29 282 1 2541 208 53 35 chr1 188100145 188100752 -94092912 - MLT1E2 LTR MaLR -8 618 1 863 274 54 35 chr1 188100995 188101312 -94092352 - L2 LINE L2 0 3313 2991 870 310 133 8 chr1 188101391 188101759 -94091905 - L2 LINE L2 -1110 2204 1791 1783 155 32 59 chr1 188101860 188101906 -94091758 + L1MA6 LINE L1 5740 5786 -514 2092 144 0 0 chr1 188101906 188102198 -94091466 + AluSq SINE Alu 1 292 -21 1783 155 32 59 chr1 188102198 188102557 -94091107 + L1MA6 LINE L1 5786 6134 -166 25 0 0 0 chr1 188102563 188102588 -94091076 + AT_rich Low_complexity Low_complexity 1 25 0 518 282 129 6 chr1 188102619 188102789 -94090875 + MIR SINE MIR 2 192 -70 2160 183 55 2 chr1 188102794 188103194 -94090470 + MSTB LTR MaLR 1 421 -5 334 234 0 0 chr1 188103196 188103260 -94090404 + MIR SINE MIR 196 259 -3 1327 267 46 44 chr1 188103262 188103853 -94089811 - MLT1G1 LTR MaLR -3 592 1 396 250 86 36 chr1 188103972 188104106 -94089558 - MIR3 SINE MIR -38 170 58 225 340 30 0 chr1 188104877 188104977 -94088687 - L3b LINE CR1 -189 1394 1292 283 297 218 0 chr1 188105075 188105176 -94088488 - L2 LINE L2 -1 3271 3149 279 107 24 48 chr1 188105909 188105993 -94087671 + (TA)n Simple_repeat Simple_repeat 2 83 0 421 89 0 0 chr1 188105994 188106050 -94087614 + MSTB LTR MaLR 317 372 -54 408 209 34 23 chr1 188106055 188106232 -94087432 + (TA)n Simple_repeat Simple_repeat 1 179 0 29 47 0 0 chr1 188106237 188106280 -94087384 + AT_rich Low_complexity Low_complexity 1 43 0 386 332 59 106 chr1 188106807 188107262 -94086402 - L2 LINE L2 -14 3258 2825 2021 137 151 0 chr1 188107921 188108293 -94085371 + MSTA LTR MaLR 1 428 0 378 355 42 6 chr1 188108304 188108470 -94085194 + MIR SINE MIR 47 218 -44 2128 113 0 0 chr1 188108829 188109134 -94084530 + AluY SINE Alu 1 305 0 801 277 23 23 chr1 188109711 188109931 -94083733 + MIR SINE MIR 2 221 -41 225 234 0 0 chr1 188111231 188111295 -94082369 + GA-rich Low_complexity Low_complexity 2 65 0 264 349 118 20 chr1 188111603 188111755 -94081909 + L3 LINE CR1 1411 1577 0 181 260 70 60 chr1 188111803 188111903 -94081761 - L2 LINE L2 -607 2707 2607 3084 162 23 27 chr1 188112670 188113226 -94080438 - MLT2B3 LTR ERVL 0 554 1 369 333 10 0 chr1 188113513 188113615 -94080049 - L2 LINE L2 -31 3241 3139 487 49 0 0 chr1 188114111 188114172 -94079492 + L1P4 LINE L1 5722 5782 -379 5512 111 26 31 chr1 188114172 188115973 -94077691 + L1PA15 LINE L1 4346 6158 -7 1316 171 92 46 chr1 188116076 188116402 -94077262 + MLT1A2 LTR MaLR 21 358 -16 243 155 84 42 chr1 188116416 188116487 -94077177 - MLT1I LTR MaLR -21 388 315 444 343 7 7 chr1 188117651 188117791 -94075873 - MIR3 SINE MIR -67 141 2 640 133 7 28 chr1 188118134 188118277 -94075387 + (TTC)n Simple_repeat Simple_repeat 1 140 0 16023 153 17 19 chr1 188118509 188120541 -94073123 + L1M1 LINE L1 2411 4445 -3279 1995 34 0 0 chr1 188120541 188120776 -94072888 + L1PA3 LINE L1 5921 6155 0 16023 153 17 19 chr1 188120776 188121660 -94072004 + L1M1 LINE L1 4445 5329 -2395 305 102 0 0 chr1 188121660 188121709 -94071955 + Alu SINE Alu 250 298 -2 16023 153 17 19 chr1 188121709 188123421 -94070243 + L1M1 LINE L1 5329 7076 -648 1836 233 67 55 chr1 188124297 188124889 -94068775 - L1ME3A LINE L1 0 6170 5451 1556 154 46 25 chr1 188124889 188125169 -94068495 - AluJo SINE Alu -24 288 3 1836 233 67 55 chr1 188125169 188125469 -94068195 - L1ME3A LINE L1 -719 5451 5156 380 284 37 25 chr1 188125623 188125785 -94067879 - MIR SINE MIR 0 262 99 238 330 9 9 chr1 188125978 188126084 -94067580 - LTR16A1 LTR ERVL -329 128 23 256 260 117 0 chr1 188126386 188126463 -94067201 - HERV16 LTR ERVL -4908 88 3 914 244 34 34 chr1 188126487 188126749 -94066915 - LTR16A LTR ERVL -67 383 122 401 241 0 53 chr1 188127013 188127146 -94066518 - MER104 DNA Tc2 -45 135 10 249 33 0 0 chr1 188127175 188127205 -94066459 + (CA)n Simple_repeat Simple_repeat 1 30 0 2855 29 0 3 chr1 188128375 188128715 -94064949 + L1PA4 LINE L1 5813 6151 -4 225 136 34 34 chr1 188128719 188128778 -94064886 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 736 273 130 4 chr1 188128938 188129169 -94064495 - MIR SINE MIR 0 262 3 859 148 8 0 chr1 188129439 188129567 -94064097 - FLAM_C SINE Alu -4 129 1 7227 48 1 0 chr1 188129804 188131444 -94062220 - L1PA5 LINE L1 -6 6148 4507 1962 123 0 25 chr1 188131505 188131790 -94061874 - AluSq SINE Alu -27 286 9 4023 123 7 0 chr1 188132238 188132821 -94060843 + L1P3 LINE L1 1 587 -5874 5130 91 25 29 chr1 188134290 188134729 -94058935 + Tigger1 DNA MER2_type 719 1155 -1263 2511 97 11 37 chr1 188134729 188135110 -94058554 + THE1C LTR MaLR 5 375 0 5130 91 25 29 chr1 188135110 188135463 -94058201 + Tigger1 DNA MER2_type 1155 1508 -910 592 281 50 34 chr1 188135655 188135975 -94057689 - L1M4 LINE L1 -1971 4175 3851 393 246 108 54 chr1 188136026 188136413 -94057251 - L1MEd LINE L1 -4910 1209 802 233 347 48 24 chr1 188136422 188136546 -94057118 + L2 LINE L2 2644 2770 -544 395 300 9 0 chr1 188136551 188136661 -94057003 + L2 LINE L2 2942 3052 -261 385 268 49 8 chr1 188137019 188137142 -94056522 + LTR16C LTR ERVL 358 485 -6 437 122 0 0 chr1 188137465 188137539 -94056125 - L1MA5 LINE L1 -2 6298 6225 214 206 29 0 chr1 188137755 188137823 -94055841 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 1623 144 74 0 chr1 188137823 188138107 -94055557 - L1M2 LINE L1 -507 5793 5489 2749 133 5 12 chr1 188138955 188139383 -94054281 - MER61B LTR ERV1 0 425 1 378 297 72 0 chr1 188139578 188139689 -94053975 + L2 LINE L2 3150 3268 -4 1949 143 42 67 chr1 188139704 188140152 -94053512 - LTR23 LTR ERV1 0 437 1 334 267 48 19 chr1 188140871 188140976 -94052688 - L2 LINE L2 -1 3312 3205 546 301 64 18 chr1 188142731 188142950 -94050714 - MIR SINE MIR -32 230 2 198 71 0 0 chr1 188143194 188143222 -94050442 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 721 252 106 25 chr1 188143824 188144098 -94049566 - L1MC4a LINE L1 -1847 5961 5666 6276 45 23 0 chr1 188144401 188145175 -94048489 - L1PA5 LINE L1 -2 6152 5361 284 260 31 63 chr1 188145439 188145566 -94048098 + MIR SINE MIR 110 232 -30 31 26 0 0 chr1 188146145 188146183 -94047481 + AT_rich Low_complexity Low_complexity 1 38 0 461 223 78 118 chr1 188147831 188147878 -94045786 - L1ME4a LINE L1 -1 6120 6073 200 128 0 26 chr1 188147878 188147917 -94045747 + (TAAAAA)n Simple_repeat Simple_repeat 6 43 0 461 223 78 118 chr1 188147917 188148106 -94045558 - L1ME4a LINE L1 -48 6073 5860 1190 181 71 99 chr1 188148106 188148379 -94045285 - MER2 DNA MER2_type 0 344 82 2477 70 0 0 chr1 188148379 188148679 -94044985 + AluY SINE Alu 1 300 -11 1190 181 71 99 chr1 188148679 188148759 -94044905 - MER2 DNA MER2_type -262 82 1 461 223 78 118 chr1 188148759 188148829 -94044835 - L1ME4a LINE L1 -261 5860 5789 2697 181 14 72 chr1 188149565 188150145 -94043519 - MLT2B3 LTR ERVL -8 546 1 9075 159 43 14 chr1 188150145 188151717 -94041947 - ERVL-B3 LTR ERVL -7 5757 4140 1021 253 49 40 chr1 188151693 188151836 -94041828 - ERVL-B3 LTR ERVL -5414 350 210 * 1874 122 0 73 chr1 188151836 188152139 -94041525 + AluSx SINE Alu 13 293 -19 1021 253 49 40 chr1 188152139 188152319 -94041345 - ERVL-B3 LTR ERVL -5554 210 24 326 214 0 14 chr1 188152308 188152378 -94041286 - Ricksha DNA DNA -1120 926 858 * 2515 226 20 6 chr1 188152439 188152939 -94040725 - MLT2B3 LTR ERVL -47 507 1 3640 98 11 0 chr1 188153957 188154478 -94039186 - L1PA13 LINE L1 -3 6160 5634 279 140 0 20 chr1 188154852 188154902 -94038762 - MLT1D LTR MaLR 0 505 457 1195 190 31 0 chr1 188154950 188155176 -94038488 - MLT1D LTR MaLR -272 233 1 6925 34 1 1 chr1 188155628 188157140 -94036524 - L1PA5 LINE L1 -1 6153 4525 421 53 133 0 chr1 188157140 188157215 -94036449 + L1P LINE L1 2093 2177 -3969 27 73 0 0 chr1 188157216 188157271 -94036393 + AT_rich Low_complexity Low_complexity 1 55 0 2239 52 10 0 chr1 188157282 188157573 -94036091 + L1P LINE L1 2132 2425 -3721 1862 198 75 32 chr1 188158277 188158741 -94034923 + LTR2B LTR ERV1 7 490 0 7200 46 2 3 chr1 188158853 188159913 -94033751 + L1PA5 LINE L1 5086 6146 -8 189 0 0 0 chr1 188159913 188159934 -94033730 + (TA)n Simple_repeat Simple_repeat 2 22 0 248 120 20 0 chr1 188160344 188160394 -94033270 + (CA)n Simple_repeat Simple_repeat 1 51 0 184 371 147 28 chr1 188160398 188160684 -94032980 - L2 LINE L2 -735 2579 2260 584 218 8 8 chr1 188161130 188161254 -94032410 + MLT1I LTR MaLR 3 126 -283 405 275 120 18 chr1 188161292 188161459 -94032205 + MLT1I LTR MaLR 226 409 0 313 138 0 17 chr1 188161464 188161522 -94032142 + MLT1I-int LTR MaLR 6 62 -1309 481 271 25 8 chr1 188162561 188162679 -94030985 - L2 LINE L2 0 3313 3194 425 334 29 55 chr1 188163119 188163463 -94030201 - L2 LINE L2 -907 2407 2073 775 270 94 82 chr1 188163547 188163973 -94029691 + MLT1J2 LTR MaLR 20 450 0 401 313 102 7 chr1 188164063 188164210 -94029454 - MER5B DNA MER1_type -16 162 2 318 225 100 0 chr1 188164245 188164325 -94029339 - MER94 DNA DNA -8 126 39 22 56 0 0 chr1 188164543 188164579 -94029085 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 188165510 188165531 -94028133 + AT_rich Low_complexity Low_complexity 1 21 0 7853 200 22 27 chr1 188165877 188168632 -94025032 - L1MA4A LINE L1 -24 6279 3495 5268 158 44 16 chr1 188168631 188169774 -94023890 - L1PA16 LINE L1 0 7604 6411 * 2006 142 0 3 chr1 188169774 188170070 -94023594 + AluSx SINE Alu 4 298 -14 5268 158 44 16 chr1 188170070 188170420 -94023244 - L1PA16 LINE L1 -1193 6411 6072 8384 223 21 28 chr1 188170421 188171896 -94021768 - L1PA16 LINE L1 -2445 5139 3687 1985 137 3 3 chr1 188171896 188172189 -94021475 - AluSq SINE Alu -20 293 1 8384 223 21 28 chr1 188172189 188173069 -94020595 - L1PA16 LINE L1 -3897 3687 2803 2994 285 12 30 chr1 188173051 188174046 -94019618 - L1PA16 LINE L1 -5796 1785 8 * 23 68 0 0 chr1 188174097 188174141 -94019523 + AT_rich Low_complexity Low_complexity 1 44 0 322 310 46 0 chr1 188174447 188174534 -94019130 - L2 LINE L2 -34 3279 3189 288 213 38 55 chr1 188175393 188175576 -94018088 + (TA)n Simple_repeat Simple_repeat 1 180 0 2701 194 10 14 chr1 188175588 188176082 -94017582 + MLT1D LTR MaLR 12 503 -2 277 346 45 50 chr1 188176272 188176474 -94017190 - L2 LINE L2 -201 3071 2871 323 322 186 40 chr1 188176612 188177068 -94016596 - L2 LINE L2 -628 2686 2164 2317 97 0 23 chr1 188177598 188177906 -94015758 + AluSq SINE Alu 1 301 -12 1983 171 84 30 chr1 188178391 188178831 -94014833 - MLT1D LTR MaLR 0 505 42 193 29 29 29 chr1 188179740 188179775 -94013889 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1195 158 0 0 chr1 188179779 188179962 -94013702 - AluY SINE Alu -33 278 96 380 287 17 9 chr1 188180742 188180857 -94012807 - MIR SINE MIR -63 145 30 663 239 13 31 chr1 188181221 188181380 -94012284 + MER91B DNA MER1_type 35 190 0 780 0 52 9 chr1 188184794 188184910 -94008754 + (TCTA)n Simple_repeat Simple_repeat 2 122 0 2030 227 65 2 chr1 188184922 188185350 -94008314 - LTR42 LTR ERVL -40 455 1 23 0 0 0 chr1 188187152 188187175 -94006489 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 188188815 188188846 -94004818 + AT_rich Low_complexity Low_complexity 1 31 0 219 417 35 0 chr1 188188917 188189032 -94004632 - MIR3 SINE MIR -87 121 3 261 0 0 0 chr1 188189195 188189224 -94004440 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 702 259 86 11 chr1 188191166 188191450 -94002214 + L1PBa LINE L1 1535 1983 -4233 265 236 146 0 chr1 188191469 188191558 -94002106 + L1MEc LINE L1 1879 1980 -4416 336 287 25 69 chr1 188191595 188191797 -94001867 + L1MEc LINE L1 2050 2242 -3973 1468 234 62 62 chr1 188191841 188192312 -94001352 + L1MEc LINE L1 2380 2853 -3362 2294 119 0 0 chr1 188192312 188192624 -94001040 + AluSx SINE Alu 1 312 0 1468 234 62 62 chr1 188192624 188192908 -94000756 + L1MEc LINE L1 2852 3135 -3080 238 242 61 15 chr1 188192908 188192974 -94000690 + MER21A LTR ERV1 392 460 -471 733 148 22 15 chr1 188193007 188193142 -94000522 + MER4B-int LTR ERV1 1 136 -6622 2848 231 41 32 chr1 188193163 188193851 -93999813 + L1PA13 LINE L1 2 695 -6092 576 99 0 0 chr1 188193860 188193941 -93999723 + L1PA15 LINE L1 6067 6147 -18 3908 264 79 29 chr1 188193971 188196642 -93997022 + L1MEc LINE L1 3164 5966 -273 960 255 72 46 chr1 188196627 188197043 -93996621 + L1ME3 LINE L1 5727 6153 -9 * 25 31 0 0 chr1 188197201 188197233 -93996431 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 188197402 188197427 -93996237 + AT_rich Low_complexity Low_complexity 1 25 0 1184 296 94 11 chr1 188197442 188198121 -93995543 + L2 LINE L2 2579 3310 -3 209 368 38 9 chr1 188199454 188199560 -93994104 - L2 LINE L2 -43 3229 3121 501 141 0 0 chr1 188199719 188199804 -93993860 + (TG)n Simple_repeat Simple_repeat 1 85 0 206 272 114 26 chr1 188199882 188199966 -93993698 - L2 LINE L2 -1353 1961 1863 1744 193 3 7 chr1 188199966 188200272 -93993392 + AluJo SINE Alu 2 306 -6 206 272 114 26 chr1 188200272 188200301 -93993363 - L2 LINE L2 -1451 1863 1838 21 57 0 0 chr1 188200477 188200512 -93993152 + AT_rich Low_complexity Low_complexity 1 35 0 353 309 65 8 chr1 188200565 188200688 -93992976 - L2 LINE L2 0 3272 3143 3876 196 27 48 chr1 188200750 188201740 -93991924 + LTR5 LTR ERVK 1 969 0 411 186 10 21 chr1 188201746 188201843 -93991821 + HERVK LTR ERVK 7 102 -7141 * 11162 148 16 10 chr1 188201837 188205414 -93988250 + HERVK LTR ERVK 3881 7241 -2 3935 195 28 50 chr1 188205416 188206406 -93987258 + LTR5 LTR ERVK 1 969 0 563 320 155 9 chr1 188207589 188207930 -93985734 - L3 LINE CR1 -2 1575 1185 2211 128 0 0 chr1 188207934 188208246 -93985418 - AluSx SINE Alu 0 312 1 189 128 0 51 chr1 188208275 188208314 -93985350 + L2 LINE L2 3269 3305 -8 290 210 190 10 chr1 188208322 188208422 -93985242 - MLT1E1 LTR MaLR -535 119 2 209 95 0 24 chr1 188208731 188208773 -93984891 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1974 24 4 28 chr1 188208799 188209050 -93984614 - L1PA4 LINE L1 0 6155 5911 21 36 0 0 chr1 188210071 188210099 -93983565 + AT_rich Low_complexity Low_complexity 1 28 0 3202 111 11 2 chr1 188210128 188210597 -93983067 + MER1A DNA MER1_type 57 529 0 237 295 87 34 chr1 188212382 188212589 -93981075 - HAL1 LINE L1 -874 1633 1416 1774 171 62 16 chr1 188212589 188213092 -93980572 - LTR27 LTR ERV1 0 501 1 477 243 116 122 chr1 188213187 188213697 -93979967 - L1MEd LINE L1 -4943 1176 670 252 333 8 16 chr1 188213791 188213920 -93979744 - L1MEd LINE L1 -5559 560 433 185 170 38 0 chr1 188214453 188214506 -93979158 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 1205 311 60 7 chr1 188214743 188215177 -93978487 - L3 LINE CR1 -36 1541 1085 669 186 0 0 chr1 188215293 188215417 -93978247 + L1PB4 LINE L1 6020 6143 -13 281 354 56 56 chr1 188216147 188216342 -93977322 - L2 LINE L2 -34 3238 3044 308 322 157 29 chr1 188216394 188216636 -93977028 - L2 LINE L2 -1015 2299 2027 312 306 167 17 chr1 188216675 188216855 -93976809 - MIR SINE MIR -38 224 18 3462 126 4 4 chr1 188216856 188217380 -93976284 + MER1A DNA MER1_type 1 524 -5 515 314 41 0 chr1 188217494 188217663 -93976001 + MER45A DNA AcHobo 1 176 -2 1780 177 3 19 chr1 188218199 188218510 -93975154 - AluJo SINE Alu -6 306 1 547 266 67 71 chr1 188218595 188218877 -93974787 + L2 LINE L2 3033 3313 0 1194 251 102 13 chr1 188219425 188219895 -93973769 + Charlie7 DNA MER1_type 52 563 -2049 1307 229 83 0 chr1 188220022 188220336 -93973328 + MER58B DNA MER1_type 1 340 -1 245 264 110 74 chr1 188220456 188220565 -93973099 - L2 LINE L2 -50 3263 3145 2168 117 0 7 chr1 188220565 188220856 -93972808 + AluSx SINE Alu 1 289 -23 245 264 110 74 chr1 188220856 188220909 -93972755 - L2 LINE L2 -168 3145 3095 348 182 41 50 chr1 188220967 188221088 -93972576 - L1MA9 LINE L1 -33 6279 6160 301 321 55 0 chr1 188223619 188223693 -93969971 + L2 LINE L2 3156 3239 -33 1757 165 112 11 chr1 188223693 188224069 -93969595 + MLT2D LTR ERVL 1 414 0 301 321 55 0 chr1 188224069 188224103 -93969561 + L2 LINE L2 3239 3270 -2 983 228 18 31 chr1 188225016 188225240 -93968424 - MER58A DNA MER1_type -3 221 1 1034 181 60 38 chr1 188225562 188225827 -93967837 + MER58B DNA MER1_type 71 341 0 369 0 0 0 chr1 188226309 188226350 -93967314 + (TG)n Simple_repeat Simple_repeat 2 42 0 181 289 70 42 chr1 188227179 188227321 -93966343 + MIR SINE MIR 41 186 -76 800 257 11 27 chr1 188227716 188227903 -93965761 + MER5A DNA MER1_type 6 189 0 232 280 100 33 chr1 188228271 188228421 -93965243 - L2 LINE L2 -571 2743 2584 201 304 40 136 chr1 188228589 188228839 -93964825 + L2 LINE L2 2971 3196 -76 * 1933 274 140 22 chr1 188228835 188229086 -93964578 - L2 LINE L2 -1 3312 3092 1676 141 26 56 chr1 188229086 188229391 -93964273 - AluSx SINE Alu -16 296 1 1933 274 140 22 chr1 188229391 188230163 -93963501 - L2 LINE L2 -221 3092 2184 318 233 41 14 chr1 188230171 188230244 -93963420 + L2 LINE L2 3238 3312 -1 555 276 156 31 chr1 188234986 188235211 -93958453 + L2 LINE L2 2633 2885 -429 347 237 69 52 chr1 188235787 188235960 -93957704 + MER74B LTR ERVL 442 617 -5 689 286 30 26 chr1 188235986 188236217 -93957447 - MIR SINE MIR -3 259 28 1177 258 160 43 chr1 188239546 188240399 -93953265 + L2 LINE L2 2371 3313 0 25 31 0 0 chr1 188242356 188242388 -93951276 + AT_rich Low_complexity Low_complexity 1 32 0 7376 95 5 23 chr1 188243252 188244343 -93949321 + MER11C LTR ERVK 1 1071 0 522 256 54 0 chr1 188244510 188244678 -93948986 - LTR33A LTR ERVL 0 523 347 207 100 0 0 chr1 188245976 188246006 -93947658 + (CA)n Simple_repeat Simple_repeat 1 30 0 929 260 135 9 chr1 188246314 188246633 -93947031 - L2 LINE L2 -2 3311 2953 2386 80 3 0 chr1 188246658 188246957 -93946707 - AluSc SINE Alu -9 300 1 261 83 0 0 chr1 188246961 188246997 -93946667 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr1 188248914 188248935 -93944729 + AT_rich Low_complexity Low_complexity 1 21 0 512 270 103 43 chr1 188249064 188249736 -93943928 - L1M4 LINE L1 -755 5391 4690 22 0 0 0 chr1 188249820 188249842 -93943822 + AT_rich Low_complexity Low_complexity 1 22 0 472 278 112 102 chr1 188250139 188250773 -93942891 - L1M4 LINE L1 -1857 4289 3648 360 299 137 41 chr1 188251340 188251684 -93941980 - L1M4 LINE L1 -2905 3241 2865 232 325 20 7 chr1 188251710 188251861 -93941803 - L1M4 LINE L1 -3312 2834 2682 21 36 0 0 chr1 188252426 188252454 -93941210 + AT_rich Low_complexity Low_complexity 1 28 0 1012 289 86 23 chr1 188252774 188253252 -93940412 - L1ME3A LINE L1 -8 6162 5655 27 0 0 0 chr1 188253335 188253362 -93940302 + AT_rich Low_complexity Low_complexity 1 27 0 2179 133 13 49 chr1 188253369 188253760 -93939904 - MER51B LTR ERV1 0 377 1 2206 142 15 0 chr1 188253761 188254100 -93939564 - MER51B-int LTR ERV1 0 7816 7473 745 146 22 7 chr1 188254101 188254238 -93939426 - LTR54B LTR ERV1 -357 141 3 3902 114 99 0 chr1 188254238 188254835 -93938829 - MER51B-int LTR ERV1 -389 7148 6493 1812 121 7 3 chr1 188254834 188255123 -93938541 - MER51B-int LTR ERV1 -2599 4938 4649 * 16138 134 45 20 chr1 188255098 188256646 -93937018 - MER51B-int LTR ERV1 -4537 3279 1659 2386 78 0 13 chr1 188256646 188256952 -93936712 - AluY SINE Alu -9 302 1 16138 134 45 20 chr1 188256952 188258319 -93935345 - MER51B-int LTR ERV1 -6157 1659 329 914 136 105 19 chr1 188258307 188258382 -93935282 - MER51B-int LTR ERV1 -7640 176 109 * 351 0 0 0 chr1 188258382 188258421 -93935243 + (GA)n Simple_repeat Simple_repeat 2 40 0 914 136 105 19 chr1 188258421 188258507 -93935157 - MER51B-int LTR ERV1 -7707 109 1 1975 129 2 2 chr1 188258507 188258893 -93934771 - MER51B LTR ERV1 0 377 48 358 147 173 13 chr1 188258883 188258958 -93934706 - MER51A LTR ERV1 -546 88 2 * 334 143 18 0 chr1 188258968 188259024 -93934640 - L1M4 LINE L1 -1039 5107 5051 30140 110 12 24 chr1 188259089 188262551 -93931113 + L1PA7 LINE L1 8 3554 -2915 2461 75 0 0 chr1 188262551 188262846 -93930818 + AluY SINE Alu 1 295 -16 30140 110 12 24 chr1 188262846 188265722 -93927942 + L1PA7 LINE L1 3554 6465 -4 411 21 0 0 chr1 188265841 188265889 -93927775 + (CA)n Simple_repeat Simple_repeat 2 49 0 2460 105 0 3 chr1 188265889 188266242 -93927422 + L1PB1 LINE L1 5793 6144 -7 1760 259 21 0 chr1 188266274 188266804 -93926860 - L1M4 LINE L1 -3267 3690 3150 1839 294 88 51 chr1 188266848 188267794 -93925870 - L1M4 LINE L1 -5656 1203 11 408 262 6 85 chr1 188268589 188268722 -93924942 - MLT1J LTR MaLR -315 196 77 2136 127 7 0 chr1 188268722 188269022 -93924642 - AluSx SINE Alu -10 302 1 408 262 6 85 chr1 188269022 188269052 -93924612 - MLT1J LTR MaLR -434 77 46 1276 301 112 7 chr1 188269120 188269539 -93924125 + LTR16B LTR ERVL 2 464 0 715 184 70 6 chr1 188269751 188269909 -93923755 + LTR54 LTR ERV1 3 170 -340 656 121 0 10 chr1 188269912 188270011 -93923653 + MER4A LTR ERV1 1 98 -566 1813 137 3 19 chr1 188270011 188270362 -93923302 + MER4A LTR ERV1 261 664 0 3823 132 195 88 chr1 188270365 188271052 -93922612 + MER4A-int LTR ERV1 1 831 -5767 462 18 0 0 chr1 188271052 188271107 -93922557 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 3823 132 195 88 chr1 188271107 188271422 -93922242 + MER4A-int LTR ERV1 831 1111 -5487 237 65 0 0 chr1 188271422 188271453 -93922211 + (TG)n Simple_repeat Simple_repeat 2 32 0 6952 115 63 20 chr1 188271453 188272723 -93920941 + MER4A-int LTR ERV1 1161 2485 -4113 1280 142 79 8 chr1 188272736 188272976 -93920688 - LTR8 LTR ERV1 -434 257 1 2583 136 98 26 chr1 188272977 188273082 -93920582 + MER4A-int LTR ERV1 2738 2834 -3764 267 79 0 0 chr1 188273082 188273120 -93920544 + (TTAAA)n Simple_repeat Simple_repeat 4 41 0 2583 136 98 26 chr1 188273120 188273697 -93919967 + MER4A-int LTR ERV1 2834 3469 -3129 373 102 34 0 chr1 188273703 188273762 -93919902 + MER4A-int LTR ERV1 3621 3681 -2917 * 15631 115 53 16 chr1 188273759 188276420 -93917244 + MER4A-int LTR ERV1 3840 6598 0 635 131 0 10 chr1 188276421 188276520 -93917144 + MER4A LTR ERV1 1 98 -566 1683 166 6 23 chr1 188276520 188276857 -93916807 + MER4A LTR ERV1 261 650 -14 2585 112 101 14 chr1 188276885 188277321 -93916343 + MER4A-int LTR ERV1 1 474 -6124 3266 108 0 24 chr1 188277325 188277825 -93915839 + MER4A-int LTR ERV1 783 1270 -3745 2259 94 6 28 chr1 188277826 188278144 -93915520 + AluY SINE Alu 1 311 0 474 18 0 0 chr1 188278144 188278183 -93915481 + (CA)n Simple_repeat Simple_repeat 1 94 0 474 18 0 0 chr1 188278183 188278238 -93915426 + (CA)n Simple_repeat Simple_repeat 2 56 0 495 122 12 0 chr1 188278250 188278331 -93915333 + LTR54 LTR ERV1 408 489 -21 1827 153 3 22 chr1 188278331 188278683 -93914981 - MER4A LTR ERV1 0 664 261 614 131 0 10 chr1 188278683 188278782 -93914882 - MER4A LTR ERV1 -566 98 1 14881 111 70 23 chr1 188278793 188281259 -93912405 - MER4A-int LTR ERV1 -5 6593 3999 2208 109 0 3 chr1 188281259 188281553 -93912111 + AluSq SINE Alu 1 293 -20 14881 111 70 23 chr1 188281553 188281675 -93911989 - MER4A-int LTR ERV1 -2599 3999 3884 1976 151 136 32 chr1 188281651 188282180 -93911484 - MER4A-int LTR ERV1 -3278 3320 2737 * 1135 155 146 9 chr1 188282180 188282406 -93911258 + LTR8 LTR ERV1 1 257 -434 7813 121 64 10 chr1 188282406 188283367 -93910297 - MER4A-int LTR ERV1 -4103 2495 1430 216 0 0 0 chr1 188283367 188283391 -93910273 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 7813 121 64 10 chr1 188283391 188283855 -93909809 - MER4A-int LTR ERV1 -5168 1430 993 258 160 0 40 chr1 188283875 188283925 -93909739 - LTR49 LTR ERV1 -282 313 266 257 100 0 117 chr1 188283925 188283985 -93909679 - MER4A-int LTR ERV1 -5851 747 695 2863 85 100 21 chr1 188283987 188284638 -93909026 - MER4A-int LTR ERV1 -5774 824 1 1815 121 23 30 chr1 188284640 188284988 -93908676 - MER4A LTR ERV1 0 664 261 563 134 21 10 chr1 188284988 188285085 -93908579 - MER4A LTR ERV1 -566 98 1 986 295 138 10 chr1 188286285 188286698 -93906966 - MLT1J LTR MaLR -45 466 1 22 0 0 0 chr1 188286798 188286820 -93906844 + AT_rich Low_complexity Low_complexity 1 22 0 332 224 97 67 chr1 188287826 188287959 -93905705 + L2 LINE L2 2837 2982 -290 307 295 72 24 chr1 188288187 188288353 -93905311 + L1MC/D LINE L1 5625 5798 -2010 342 146 0 0 chr1 188288353 188288408 -93905256 - MLT2C2 LTR ERVL 0 520 466 2293 213 0 5 chr1 188288442 188288860 -93904804 - MLT2C2 LTR ERVL -48 416 1 1538 201 3 40 chr1 188289128 188289452 -93904212 + AluJo SINE Alu 1 312 0 23 0 0 0 chr1 188289487 188289510 -93904154 + AT_rich Low_complexity Low_complexity 1 23 0 269 314 23 0 chr1 188290181 188290267 -93903397 - MIR SINE MIR -76 186 99 216 0 0 0 chr1 188290324 188290348 -93903316 + (TA)n Simple_repeat Simple_repeat 1 24 0 708 336 139 29 chr1 188290495 188291143 -93902521 - L2 LINE L2 -2071 1243 525 7002 65 0 0 chr1 188291249 188293003 -93900661 + L1PA7 LINE L1 4386 6141 -13 1110 176 54 31 chr1 188293089 188293207 -93900457 + MIR SINE MIR 34 161 -101 4111 137 19 75 chr1 188293207 188294038 -93899626 - LTR1 LTR ERV1 0 785 1 1110 176 54 31 chr1 188294038 188294141 -93899523 + MIR SINE MIR 161 260 -2 24 0 0 0 chr1 188295679 188295703 -93897961 + AT_rich Low_complexity Low_complexity 1 24 0 194 253 110 32 chr1 188297896 188298050 -93895614 + MIR SINE MIR 91 256 -6 203 200 22 0 chr1 188298189 188298234 -93895430 + GA-rich Low_complexity Low_complexity 1 46 0 292 341 12 12 chr1 188298594 188298764 -93894900 + L1MDa LINE L1 18 187 -6353 308 260 0 0 chr1 188298887 188298964 -93894700 + L1M4 LINE L1 2947 3023 -3123 9730 98 5 3 chr1 188298965 188300307 -93893357 + L1P LINE L1 2 1346 -4800 291 246 77 0 chr1 188300526 188300591 -93893073 + MER3 DNA MER1_type 2 71 -138 2274 93 10 0 chr1 188302468 188302759 -93890905 - AluSx SINE Alu -18 294 1 324 340 0 39 chr1 188302859 188303012 -93890652 + MER5B DNA MER1_type 3 149 -29 381 283 28 69 chr1 188303031 188303176 -93890488 - MIR SINE MIR 0 262 124 405 332 156 5 chr1 188304422 188304621 -93889043 - MIR SINE MIR -17 245 17 1089 263 113 68 chr1 188304651 188305039 -93888625 + MLT1G LTR MaLR 1 370 -160 326 366 189 14 chr1 188305071 188305352 -93888312 + L2 LINE L2 2943 3272 0 1183 319 66 19 chr1 188305885 188306475 -93887189 + L1MDa LINE L1 417 1034 -5687 1449 275 83 19 chr1 188306507 188307238 -93886426 + L1MDa LINE L1 1638 2415 -4306 261 163 0 0 chr1 188307541 188307590 -93886074 + (TG)n Simple_repeat Simple_repeat 2 50 0 208 219 232 0 chr1 188307603 188307685 -93885979 + L2 LINE L2 3211 3311 -2 561 122 0 137 chr1 188308680 188308819 -93884845 + L1MA9 LINE L1 6156 6275 -37 981 181 62 29 chr1 188309020 188309230 -93884434 - MER20 DNA MER1_type 0 219 3 1387 214 25 7 chr1 188309469 188309750 -93883914 + MSTD LTR MaLR 111 396 0 1704 11 0 5 chr1 188309784 188309973 -93883691 + AluY SINE Alu 32 219 -92 493 268 10 81 chr1 188310073 188310282 -93883382 - L1MC/D LINE L1 -2060 5748 5555 205 172 35 35 chr1 188310385 188310472 -93883192 + (TTATA)n Simple_repeat Simple_repeat 4 90 0 23 0 0 0 chr1 188310503 188310526 -93883138 + AT_rich Low_complexity Low_complexity 1 23 0 1412 93 10 0 chr1 188310601 188310805 -93882859 + L1PA14 LINE L1 5954 6159 -2 419 260 30 24 chr1 188310845 188311014 -93882650 - L1M4 LINE L1 -2913 3233 3064 249 224 65 9 chr1 188311088 188311195 -93882469 - L1M4 LINE L1 -3181 2965 2853 3021 89 59 2 chr1 188311754 188312212 -93881452 - L1P4 LINE L1 -401 5767 5284 436 214 0 0 chr1 188312212 188312393 -93881271 + L1P LINE L1 2391 2760 -3386 * 3244 182 30 5 chr1 188312387 188313047 -93880617 - L1P LINE L1 -781 5365 4689 678 246 126 11 chr1 188315722 188315913 -93877751 + MIR SINE MIR 32 244 -18 1517 130 0 29 chr1 188316748 188316987 -93876677 - AluSg/x SINE Alu 0 310 79 399 146 0 0 chr1 188316987 188317042 -93876622 + AluS SINE Alu 33 87 -215 22 0 0 0 chr1 188317105 188317127 -93876537 + AT_rich Low_complexity Low_complexity 1 22 0 517 269 42 46 chr1 188317330 188317546 -93876118 + MIR SINE MIR 10 224 -38 908 184 6 0 chr1 188317625 188317788 -93875876 + FRAM SINE Alu 1 164 -2 3993 69 9 34 chr1 188318896 188319464 -93874200 - MER41A LTR ERV1 0 554 1 348 24 0 0 chr1 188319892 188319933 -93873731 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 688 298 50 37 chr1 188319943 188320265 -93873399 - L2 LINE L2 -27 3286 2961 10339 53 1 2 chr1 188321929 188324001 -93869663 + L1PA6 LINE L1 4079 6149 -5 2285 54 44 3 chr1 188324128 188324425 -93869239 - AluY SINE Alu -2 309 1 237 33 0 0 chr1 188326079 188326109 -93867555 + (TG)n Simple_repeat Simple_repeat 2 31 0 371 366 14 9 chr1 188326115 188326331 -93867333 - L2 LINE L2 -574 2740 2524 39 68 0 0 chr1 188326366 188326440 -93867224 + AT_rich Low_complexity Low_complexity 1 74 0 2231 109 0 0 chr1 188326441 188326734 -93866930 - AluSg SINE Alu -17 293 1 536 190 68 32 chr1 188326768 188326923 -93866741 + MER33 DNA MER1_type 1 158 -81 26 50 0 0 chr1 188326992 188327032 -93866632 + AT_rich Low_complexity Low_complexity 1 40 0 618 158 82 6 chr1 188327037 188327195 -93866469 + MER33 DNA MER1_type 155 324 0 195 303 128 55 chr1 188328339 188328448 -93865216 - L2 LINE L2 -8 3264 3148 183 80 0 0 chr1 188328626 188328651 -93865013 + (TG)n Simple_repeat Simple_repeat 2 26 0 897 191 38 0 chr1 188328685 188328842 -93864822 - AluJo SINE Alu -29 283 121 498 318 87 40 chr1 188329707 188330176 -93863488 + L2 LINE L2 531 1021 -2293 21 0 0 0 chr1 188330256 188330277 -93863387 + AT_rich Low_complexity Low_complexity 1 21 0 497 286 101 0 chr1 188330738 188330916 -93862748 - MIR SINE MIR -62 200 5 1570 130 0 0 chr1 188331920 188332135 -93861529 + AluSx SINE Alu 1 215 -97 730 243 89 73 chr1 188332861 188333232 -93860432 - L1ME3A LINE L1 0 6170 5794 304 290 47 19 chr1 188333280 188333387 -93860277 + L1MC4 LINE L1 6592 6701 -1341 554 229 157 6 chr1 188333407 188333573 -93860091 - L1ME3A LINE L1 -377 5793 5603 2283 104 7 0 chr1 188334666 188334974 -93858690 + AluSp SINE Alu 1 310 -3 376 279 81 97 chr1 188335557 188335822 -93857842 - L1ME3A LINE L1 -1977 4169 3912 3195 115 4 4 chr1 188335822 188336300 -93857364 - L1PB3 LINE L1 -1 6153 5676 376 279 81 97 chr1 188336300 188336468 -93857196 - L1ME3A LINE L1 -2234 3912 3743 205 205 0 0 chr1 188336572 188336611 -93857053 + T-rich Low_complexity Low_complexity 5 43 0 310 283 109 50 chr1 188336890 188337212 -93856452 - L1ME3A LINE L1 -2754 3392 3052 328 227 11 0 chr1 188337268 188337356 -93856308 - L1ME3A LINE L1 -3211 2935 2847 1280 300 109 7 chr1 188338556 188339255 -93854409 + L1MC4 LINE L1 7268 8037 -5 1574 214 3 10 chr1 188339992 188340301 -93853363 + AluJo SINE Alu 1 307 -5 5137 147 8 0 chr1 188340441 188341239 -93852425 - L1PA16 LINE L1 -4 6162 5359 1851 88 19 0 chr1 188341239 188341500 -93852164 - L1PA13 LINE L1 -4 6159 5894 22 56 0 0 chr1 188341609 188341645 -93852019 + AT_rich Low_complexity Low_complexity 1 36 0 318 225 100 0 chr1 188341863 188341943 -93851721 + MER94 DNA DNA 39 126 -8 401 313 102 7 chr1 188341978 188342125 -93851539 + MER5B DNA MER1_type 2 162 -16 775 270 94 82 chr1 188342215 188342641 -93851023 - MLT1J2 LTR MaLR 0 450 20 400 336 35 56 chr1 188342725 188343067 -93850597 + L2 LINE L2 2073 2407 -907 481 271 25 8 chr1 188343507 188343625 -93850039 + L2 LINE L2 3194 3313 0 313 138 0 17 chr1 188344664 188344722 -93848942 - MLT1I-int LTR MaLR -1309 62 6 405 275 120 18 chr1 188344727 188344894 -93848770 - MLT1I LTR MaLR 0 409 226 584 218 8 8 chr1 188344932 188345056 -93848608 - MLT1I LTR MaLR -283 126 3 269 100 20 0 chr1 188345792 188345842 -93847822 + (TG)n Simple_repeat Simple_repeat 1 51 0 7272 44 0 0 chr1 188346269 188347332 -93846332 - L1PA5 LINE L1 -7 6147 5086 1869 209 11 43 chr1 188347444 188347908 -93845756 - LTR2 LTR ERV1 0 449 1 2253 48 10 0 chr1 188348611 188348902 -93844762 - L1P LINE L1 -3721 2425 2132 32 81 0 0 chr1 188348913 188348987 -93844677 + AT_rich Low_complexity Low_complexity 1 74 0 419 36 0 0 chr1 188348989 188349044 -93844620 - L1P LINE L1 -3999 2147 2093 6903 36 1 1 chr1 188349044 188350557 -93843107 + L1PA5 LINE L1 4525 6154 0 1195 190 31 0 chr1 188351006 188351232 -93842432 + MLT1D LTR MaLR 1 233 -272 279 140 0 20 chr1 188351280 188351330 -93842334 + MLT1E2 LTR MaLR 578 626 0 3640 98 11 0 chr1 188351704 188352225 -93841439 + L1PA13 LINE L1 5634 6160 -3 2509 226 20 6 chr1 188353243 188353743 -93839921 + MLT2B3 LTR ERVL 1 507 -47 334 211 0 14 chr1 188353804 188353875 -93839789 + Ricksha DNA DNA 858 927 -1119 * 1077 251 50 37 chr1 188353863 188354042 -93839622 + ERVL-B3 LTR ERVL 24 210 -5554 1918 119 0 66 chr1 188354042 188354344 -93839320 - AluSx SINE Alu -18 294 13 1077 251 50 37 chr1 188354344 188354487 -93839177 + ERVL-B3 LTR ERVL 210 350 -5414 * 9068 160 43 14 chr1 188354463 188356035 -93837629 + ERVL-B3 LTR ERVL 4140 5757 -7 2728 178 14 72 chr1 188356035 188356615 -93837049 + MLT2B3 LTR ERVL 1 546 -8 456 225 78 118 chr1 188357351 188357421 -93836243 + L1ME4a LINE L1 5789 5860 -261 1184 195 59 88 chr1 188357421 188357501 -93836163 + MER2 DNA MER2_type 1 82 -262 2463 73 0 0 chr1 188357501 188357801 -93835863 - AluY SINE Alu -11 300 1 1184 195 59 88 chr1 188357801 188358074 -93835590 + MER2 DNA MER2_type 82 344 0 456 225 78 118 chr1 188358074 188358349 -93835315 + L1ME4a LINE L1 5860 6120 -1 31 26 0 0 chr1 188359997 188360035 -93833629 + AT_rich Low_complexity Low_complexity 1 38 0 310 311 51 51 chr1 188360614 188360810 -93832854 - MIR SINE MIR -30 232 37 6219 45 23 0 chr1 188361005 188361774 -93831890 + L1PA5 LINE L1 5361 6147 -7 6471 47 1 0 chr1 188361798 188362586 -93831078 + L1PA6 LINE L1 5361 6149 -5 2255 57 44 3 chr1 188362714 188363011 -93830653 - AluY SINE Alu -2 309 1 237 33 0 0 chr1 188364663 188364693 -93828971 + (TG)n Simple_repeat Simple_repeat 2 31 0 371 366 14 9 chr1 188364699 188364915 -93828749 - L2 LINE L2 -574 2740 2524 39 68 0 0 chr1 188364950 188365024 -93828640 + AT_rich Low_complexity Low_complexity 1 74 0 2243 106 0 0 chr1 188365025 188365318 -93828346 - AluSg SINE Alu -17 293 1 538 190 68 32 chr1 188365352 188365507 -93828157 + MER33 DNA MER1_type 1 158 -81 26 50 0 0 chr1 188365576 188365616 -93828048 + AT_rich Low_complexity Low_complexity 1 40 0 618 158 82 6 chr1 188365621 188365779 -93827885 + MER33 DNA MER1_type 155 324 0 195 303 128 55 chr1 188366923 188367032 -93826632 - L2 LINE L2 -8 3264 3148 219 69 0 0 chr1 188367210 188367239 -93826425 + (TG)n Simple_repeat Simple_repeat 2 30 0 892 187 39 0 chr1 188367276 188367431 -93826233 - AluJo SINE Alu -31 281 121 498 318 87 40 chr1 188368296 188368765 -93824899 + L2 LINE L2 531 1021 -2293 21 0 0 0 chr1 188368845 188368866 -93824798 + AT_rich Low_complexity Low_complexity 1 21 0 497 286 101 0 chr1 188369327 188369505 -93824159 - MIR SINE MIR -62 200 5 1575 134 0 0 chr1 188370509 188370726 -93822938 + AluSx SINE Alu 1 217 -95 761 213 43 173 chr1 188371450 188372103 -93821561 - L1ME3A LINE L1 0 6170 5603 2283 104 7 0 chr1 188373196 188373504 -93820160 + AluSp SINE Alu 1 310 -3 380 279 81 97 chr1 188374087 188374352 -93819312 - L1ME3A LINE L1 -1977 4169 3912 3181 117 4 4 chr1 188374352 188374830 -93818834 - L1PB3 LINE L1 -1 6153 5676 380 279 81 97 chr1 188374830 188374998 -93818666 - L1ME3A LINE L1 -2234 3912 3743 205 205 0 0 chr1 188375102 188375141 -93818523 + T-rich Low_complexity Low_complexity 5 43 0 310 283 109 50 chr1 188375420 188375742 -93817922 - L1ME3A LINE L1 -2754 3392 3052 328 227 11 0 chr1 188375798 188375886 -93817778 - L1ME3A LINE L1 -3211 2935 2847 1303 299 109 7 chr1 188377086 188377785 -93815879 + L1MC4 LINE L1 7268 8037 -5 1604 216 0 10 chr1 188378522 188378832 -93814832 + AluJo SINE Alu 1 307 -5 5177 148 7 0 chr1 188378972 188379779 -93813885 - L1PA16 LINE L1 -4 6162 5350 * 5732 96 38 1 chr1 188379770 188380615 -93813049 - L1PA13 LINE L1 -4 6159 5284 416 97 0 0 chr1 188380615 188380677 -93812987 + L1P LINE L1 2391 2452 -3694 436 274 0 0 chr1 188380679 188380796 -93812868 + L1P LINE L1 2644 2760 -3386 * 3244 182 30 5 chr1 188380790 188381450 -93812214 - L1PA16 LINE L1 -781 5365 4689 678 246 126 11 chr1 188384124 188384315 -93809349 + MIR SINE MIR 32 244 -18 1531 126 0 29 chr1 188385151 188385390 -93808274 - AluSg/x SINE Alu 0 310 79 399 146 0 0 chr1 188385390 188385445 -93808219 + AluS SINE Alu 33 87 -215 22 0 0 0 chr1 188385508 188385530 -93808134 + AT_rich Low_complexity Low_complexity 1 22 0 517 269 42 46 chr1 188385733 188385949 -93807715 + MIR SINE MIR 10 224 -38 924 182 6 0 chr1 188386028 188386193 -93807471 + FRAM SINE Alu 1 166 0 3981 70 9 34 chr1 188387301 188387869 -93805795 - MER41A LTR ERV1 0 554 1 384 22 0 0 chr1 188388304 188388349 -93805315 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 688 298 50 37 chr1 188388359 188388681 -93804983 - L2 LINE L2 -27 3286 2961 10389 52 0 1 chr1 188390345 188392420 -93801244 + L1PA6 LINE L1 4079 6152 -2 721 252 106 25 chr1 188392723 188392997 -93800667 + L1MC4a LINE L1 5666 5961 -1847 198 71 0 0 chr1 188393599 188393627 -93800037 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 546 301 64 18 chr1 188393871 188394090 -93799574 + MIR SINE MIR 2 230 -32 334 267 48 19 chr1 188395833 188395938 -93797726 + L2 LINE L2 3205 3312 -1 1938 145 42 65 chr1 188396657 188397104 -93796560 + LTR23 LTR ERV1 1 437 0 361 279 72 0 chr1 188397119 188397230 -93796434 - L2 LINE L2 -4 3309 3191 2749 133 5 12 chr1 188397425 188397853 -93795811 + MER61B LTR ERV1 1 425 0 1623 144 74 0 chr1 188398701 188398985 -93794679 + L1M2 LINE L1 5489 5793 -507 214 206 29 0 chr1 188398985 188399053 -93794611 + (TATATG)n Simple_repeat Simple_repeat 1 70 0 437 122 0 0 chr1 188399269 188399343 -93794321 + L1MA5 LINE L1 6225 6298 -2 365 271 51 8 chr1 188399671 188399789 -93793875 - LTR16C LTR ERVL -11 480 358 395 300 9 0 chr1 188400147 188400257 -93793407 - L2 LINE L2 -261 3052 2942 233 347 48 24 chr1 188400262 188400386 -93793278 - L2 LINE L2 -544 2770 2644 393 246 108 54 chr1 188400395 188400782 -93792882 + L1MEd LINE L1 802 1209 -4910 612 295 49 28 chr1 188400833 188401223 -93792441 + L1M4 LINE L1 3851 4248 -1898 * 14361 39 0 0 chr1 188401222 188403009 -93790655 - L1PA5 LINE L1 -1369 4777 2991 7231 45 2 0 chr1 188403009 188404380 -93789284 + L1PA5 LINE L1 4774 6146 -8 29 0 0 0 chr1 188404380 188404409 -93789255 + AT_rich Low_complexity Low_complexity 1 29 0 2561 207 26 48 chr1 188404454 188405020 -93788644 - MLT2B3 LTR ERVL 0 554 1 3493 148 19 2 chr1 188405020 188405602 -93788062 - ERVL-B3 LTR ERVL -7 5757 5166 1303 61 0 6 chr1 188405602 188405767 -93787897 + L1P2 LINE L1 5430 5593 -561 1487 172 7 71 chr1 188405771 188406068 -93787596 - ERVL-B3 LTR ERVL -609 5155 4878 1243 261 108 15 chr1 188406102 188406528 -93787136 + L1M2c LINE L1 550 1434 -6132 4828 232 41 37 chr1 188406569 188407823 -93785841 + L1M2c LINE L1 2097 3345 -4220 2002 106 53 3 chr1 188407823 188408105 -93785559 + AluSg SINE Alu 1 296 -14 4828 232 41 37 chr1 188408105 188408950 -93784714 + L1M2c LINE L1 3345 4185 -3380 282 29 0 0 chr1 188408950 188408985 -93784679 + (TA)n Simple_repeat Simple_repeat 1 35 0 4828 232 41 37 chr1 188408985 188409143 -93784521 + L1M2c LINE L1 4185 4046 -3519 2119 140 0 0 chr1 188409143 188409451 -93784213 + AluSx SINE Alu 1 308 -4 4828 232 41 37 chr1 188409451 188409896 -93783768 + L1M2c LINE L1 4045 4487 -3078 1207 209 16 7 chr1 188409894 188410201 -93783463 + L1P LINE L1 5072 5381 -765 * 268 184 20 0 chr1 188410204 188410253 -93783411 - HERVL-B3 LTR ERVL -5079 575 526 870 150 3 22 chr1 188410253 188410427 -93783237 + MER51B LTR ERV1 34 257 -120 1503 274 52 31 chr1 188410430 188410784 -93782880 - HERVL-B3 LTR ERVL -5274 490 122 1727 179 21 0 chr1 188410784 188411069 -93782595 + AluJb SINE Alu 1 291 -21 1503 274 52 31 chr1 188411069 188411193 -93782471 - HERVL-B3 LTR ERVL -5642 122 2 1341 209 17 0 chr1 188411196 188411236 -93782428 - MLT2B3 LTR ERVL -2 552 514 793 86 16 0 chr1 188411236 188411364 -93782300 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 1341 209 17 0 chr1 188411364 188411558 -93782106 - MLT2B3 LTR ERVL -40 514 314 1915 120 117 12 chr1 188411671 188412012 -93781652 + MER51B LTR ERV1 1 377 0 1021 124 34 40 chr1 188412012 188412189 -93781475 + MER51B-int LTR ERV1 1 176 -7640 22520 118 43 15 chr1 188412200 188416587 -93777077 + MER51B-int LTR ERV1 422 4812 -3004 2142 132 0 0 chr1 188416587 188416882 -93776782 + AluSq SINE Alu 3 297 -16 22520 118 43 15 chr1 188416882 188419974 -93773690 + MER51B-int LTR ERV1 4812 7816 0 1704 138 43 4 chr1 188419977 188420314 -93773350 + MER51B LTR ERV1 3 377 0 1628 268 48 9 chr1 188420314 188420777 -93772887 + LTR26 LTR ERV1 123 603 0 1481 183 51 35 chr1 188420777 188421089 -93772575 - MLT2B3 LTR ERVL -237 317 1 39 22 0 0 chr1 188421095 188421141 -93772523 + AT_rich Low_complexity Low_complexity 1 46 0 1514 234 52 33 chr1 188421206 188421690 -93771974 + L1MC4 LINE L1 7133 7625 -417 23 0 0 0 chr1 188421729 188421752 -93771912 + AT_rich Low_complexity Low_complexity 1 23 0 953 258 117 31 chr1 188421802 188422315 -93771349 + L1ME3A LINE L1 5313 5886 -284 1221 168 168 57 chr1 188422315 188422609 -93771055 + MER4A LTR ERV1 2 241 -224 2101 107 10 13 chr1 188422609 188422908 -93770756 - AluSx SINE Alu -14 298 1 1221 168 168 57 chr1 188422908 188423161 -93770503 + MER4A LTR ERV1 241 465 0 242 54 0 27 chr1 188423178 188423215 -93770449 + (TA)n Simple_repeat Simple_repeat 1 36 0 533 273 144 10 chr1 188423233 188423427 -93770237 + L1ME3A LINE L1 5938 6157 -13 246 320 33 33 chr1 188423444 188423566 -93770098 + L1MC/D LINE L1 5439 5560 -2248 13176 226 45 40 chr1 188423592 188429759 -93763905 + L1PA16 LINE L1 2 6826 -778 1817 161 10 26 chr1 188429759 188430064 -93763600 + AluSx SINE Alu 1 300 -12 13176 226 45 40 chr1 188430064 188430847 -93762817 + L1PA16 LINE L1 6826 7604 0 374 231 85 8 chr1 188430875 188431005 -93762659 + L1MC/D LINE L1 5611 5750 -2058 206 423 27 0 chr1 188432758 188432869 -93760795 - L2 LINE L2 -34 3238 3125 21 0 0 0 chr1 188433177 188433198 -93760466 + AT_rich Low_complexity Low_complexity 1 21 0 3040 165 35 0 chr1 188433780 188434296 -93759368 + L1MC1 LINE L1 5775 6308 -25 38 0 0 0 chr1 188434296 188434334 -93759330 + AT_rich Low_complexity Low_complexity 1 38 0 538 71 65 18 chr1 188434334 188434503 -93759161 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 211 62 37 62 chr1 188434515 188434596 -93759068 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 237 209 32 38 chr1 188434606 188434764 -93758900 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 * 326 207 46 17 chr1 188434651 188434825 -93758839 + (TA)n Simple_repeat Simple_repeat 2 180 0 186 103 0 0 chr1 188435274 188435303 -93758361 + (CA)n Simple_repeat Simple_repeat 2 30 0 335 327 50 28 chr1 188436032 188436193 -93757471 - MIR SINE MIR -65 143 8 1356 160 19 26 chr1 188436835 188437103 -93756561 + L1PA15 LINE L1 5896 6161 -4 1885 154 7 0 chr1 188437139 188437424 -93756240 + AluJb SINE Alu 1 287 -25 1314 258 86 17 chr1 188437614 188438090 -93755574 - Charlie7 DNA MER1_type -2054 558 50 2147 295 90 28 chr1 188438751 188439581 -93754083 + L1M2b LINE L1 21 902 -6307 * 6187 221 30 9 chr1 188439579 188441765 -93751899 + L1M2b LINE L1 1719 3948 -3260 3802 196 29 7 chr1 188443214 188444099 -93749565 + L1M2b LINE L1 3962 4866 -2342 7532 32 0 2 chr1 188444218 188445154 -93748510 + L1PA3 LINE L1 5222 6155 0 408 20 0 0 chr1 188445616 188445665 -93747999 + (CA)n Simple_repeat Simple_repeat 2 50 0 286 290 139 83 chr1 188445887 188446793 -93746871 + L1MEd LINE L1 113 1069 -5050 15966 175 15 12 chr1 188446811 188450172 -93743492 + L1PA14 LINE L1 2737 6111 -753 2293 107 0 16 chr1 188450172 188450490 -93743174 + AluSp SINE Alu 1 313 0 15966 175 15 12 chr1 188450490 188450998 -93742666 + L1PA14 LINE L1 6111 6616 -248 3261 132 58 4 chr1 188451817 188452369 -93741295 - L1MB3 LINE L1 0 6183 5602 189 0 0 0 chr1 188452821 188452842 -93740822 + (TGG)n Simple_repeat Simple_repeat 3 23 0 303 130 0 0 chr1 188453052 188453098 -93740566 + AluJo SINE Alu 1 46 -256 2044 113 14 14 chr1 188453056 188453349 -93740315 + AluSx SINE Alu 5 297 -15 349 333 24 8 chr1 188454449 188454572 -93739092 - MIR SINE MIR -61 147 23 6633 45 2 0 chr1 188456248 188457063 -93736601 + L1PA5 LINE L1 5335 6151 -3 905 290 149 27 chr1 188458146 188458853 -93734811 - L2 LINE L2 -68 3245 2449 815 267 112 55 chr1 188458908 188459309 -93734355 + LTR16C LTR ERVL 67 490 -1 3005 251 76 56 chr1 188459309 188460361 -93733303 - L2 LINE L2 -1000 2314 1242 339 347 66 0 chr1 188461070 188461237 -93732427 + MIR SINE MIR 20 197 -65 2706 152 6 17 chr1 188461266 188461732 -93731932 - MLT1C LTR MaLR -6 461 1 1953 136 42 0 chr1 188462792 188463079 -93730585 - AluSq SINE Alu -14 299 1 457 325 52 16 chr1 188463690 188463881 -93729783 + MIR SINE MIR 8 205 -57 1413 273 16 33 chr1 188464093 188464577 -93729087 + L1PB4 LINE L1 9 484 -6365 1402 290 11 32 chr1 188464877 188465436 -93728228 + L1PB4 LINE L1 688 1234 -5615 6103 211 50 90 chr1 188465440 188469151 -93724513 + L1PB4 LINE L1 2309 5709 -1139 1312 183 33 8 chr1 188469156 188469421 -93724243 + AluJo SINE Alu 39 309 0 3940 185 35 12 chr1 188469426 188470535 -93723129 + L1PB4 LINE L1 5727 6851 -7 207 405 63 0 chr1 188470626 188470737 -93722927 + L2 LINE L2 3139 3256 -16 1870 167 0 0 chr1 188471457 188471739 -93721925 - AluSx SINE Alu -30 282 1 1694 145 84 39 chr1 188472138 188472497 -93721167 + THE1C LTR MaLR 1 375 0 1611 195 13 30 chr1 188472526 188472824 -93720840 + AluJb SINE Alu 1 293 -19 32610 95 10 49 chr1 188473020 188477001 -93716663 - L1PA7 LINE L1 0 6154 2020 2441 62 0 31 chr1 188477001 188477322 -93716342 - AluY SINE Alu 0 311 1 32610 95 10 49 chr1 188477322 188477620 -93716044 - L1PA7 LINE L1 -4134 2020 1712 993 128 0 0 chr1 188477620 188477761 -93715903 - AluSg/x SINE Alu 0 310 170 32610 95 10 49 chr1 188477761 188479741 -93713923 - L1PA7 LINE L1 -4442 1712 11 1601 169 13 42 chr1 188479753 188480060 -93713604 - AluJb SINE Alu -14 298 1 6312 85 52 22 chr1 188481073 188482796 -93710868 - L1PA14 LINE L1 -4 6157 4416 1300 245 14 3 chr1 188482818 188483100 -93710564 + AluJo SINE Alu 3 287 -25 232 298 64 43 chr1 188483758 188483852 -93709812 + MIR SINE MIR 132 227 -35 1632 160 13 42 chr1 188484084 188484390 -93709274 - AluJb SINE Alu -15 297 1 212 0 0 35 chr1 188484451 188484480 -93709184 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 370 256 137 0 chr1 188484903 188485020 -93708644 - MIR SINE MIR -56 206 74 21 36 0 0 chr1 188485465 188485493 -93708171 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr1 188486158 188486205 -93707459 + AT_rich Low_complexity Low_complexity 1 47 0 759 143 8 16 chr1 188487390 188487516 -93706148 - FLAM_C SINE Alu -18 125 1 204 162 29 29 chr1 188487566 188487634 -93706030 + T-rich Low_complexity Low_complexity 4 71 0 2219 115 10 3 chr1 188487982 188488287 -93705377 - AluSx SINE Alu -5 307 1 278 260 164 10 chr1 188488494 188488598 -93705066 - L2 LINE L2 -3 3310 3191 21 71 0 0 chr1 188489306 188489348 -93704316 + AT_rich Low_complexity Low_complexity 1 42 0 492 315 0 0 chr1 188489505 188489654 -93704010 - ERVL LTR ERVL -636 5128 4980 859 238 35 13 chr1 188489698 188489925 -93703739 - MLT1H1 LTR MaLR -2 553 322 239 255 0 0 chr1 188490042 188490089 -93703575 - MLT1H1 LTR MaLR -400 155 109 1077 243 70 17 chr1 188490109 188490409 -93703255 + MLT2B1 LTR ERVL 149 464 -56 326 164 23 125 chr1 188490553 188490681 -93702983 + ERVL LTR ERVL 1 115 -5539 23 0 0 0 chr1 188492537 188492560 -93701104 + AT_rich Low_complexity Low_complexity 1 23 0 1125 273 26 11 chr1 188492560 188492917 -93700747 + ERVL LTR ERVL 104 486 -5201 311 211 11 44 chr1 188493793 188493883 -93699781 - MLT1F LTR MaLR -3 539 453 23685 48 1 0 chr1 188493905 188497366 -93696298 - L1P2 LINE L1 -411 5743 2281 6064 177 67 12 chr1 188498006 188499357 -93694307 - Charlie1a DNA MER1_type -30 1425 1 281 213 47 20 chr1 188500508 188500658 -93693006 + (TA)n Simple_repeat Simple_repeat 2 155 0 1505 178 74 0 chr1 188501086 188501356 -93692308 + AluJo SINE Alu 21 310 -2 21 0 0 0 chr1 188501416 188501437 -93692227 + AT_rich Low_complexity Low_complexity 1 21 0 236 347 29 20 chr1 188501474 188501647 -93692017 - MIR SINE MIR -48 214 6 1287 167 51 121 chr1 188501779 188502168 -93691496 - MLT1A1 LTR MaLR 0 365 4 270 56 0 0 chr1 188502175 188502211 -93691453 + (TG)n Simple_repeat Simple_repeat 1 36 0 217 298 8 23 chr1 188502215 188502346 -93691318 + (TA)n Simple_repeat Simple_repeat 2 130 0 * 231 216 0 0 chr1 188502327 188502378 -93691286 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2856 178 2 8 chr1 188503445 188503933 -93689731 + MER66B LTR ERV1 1 485 -1 205 286 36 36 chr1 188504045 188504129 -93689535 - L2 LINE L2 -37 3276 3193 3624 201 27 8 chr1 188504155 188504935 -93688729 + L1PA16 LINE L1 4553 5347 -799 297 0 0 0 chr1 188504937 188504970 -93688694 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 6614 87 11 1 chr1 188504970 188505907 -93687757 - L1PA10 LINE L1 -21 6147 5203 4975 125 41 15 chr1 188505907 188505937 -93687727 + L1PA16 LINE L1 5336 5364 -802 2062 106 33 0 chr1 188505937 188506212 -93687452 + AluSg SINE Alu 1 284 -26 4975 125 41 15 chr1 188506212 188506990 -93686674 + L1PA16 LINE L1 5364 6165 -1 1193 161 43 0 chr1 188507118 188507348 -93686316 - L1 LINE L1 -1280 4866 4627 325 234 145 55 chr1 188507791 188507936 -93685728 - MIR SINE MIR -57 205 48 250 273 82 36 chr1 188509237 188509347 -93684317 + MLT1I LTR MaLR 57 171 -238 778 289 69 0 chr1 188509718 188509964 -93683700 + HERVL LTR ERVL 3728 3990 -1664 1309 298 63 2 chr1 188510015 188510414 -93683250 + HERVL LTR ERVL 4111 4533 -1231 324 233 53 0 chr1 188510419 188510505 -93683159 + MIR SINE MIR 68 146 -62 6096 146 74 40 chr1 188510506 188511742 -93681922 - MER52C LTR ERV1 0 1278 1 28 0 0 0 chr1 188511743 188511771 -93681893 + AT_rich Low_complexity Low_complexity 1 28 0 472 83 12 24 chr1 188512210 188512294 -93681370 + L1MB8 LINE L1 6096 6178 0 843 179 42 33 chr1 188512554 188512766 -93680898 - MER63 DNA MER1_type -21 1040 827 1679 142 33 36 chr1 188513250 188513552 -93680112 - MSTA LTR MaLR 0 428 128 946 102 0 0 chr1 188513651 188513778 -93679886 - MSTA LTR MaLR -301 127 1 9914 158 23 4 chr1 188513778 188515399 -93678265 - MSTA-int LTR MaLR 0 1651 1 2642 123 28 14 chr1 188515399 188515821 -93677843 - MSTA LTR MaLR 0 428 1 27 29 0 0 chr1 188516443 188516477 -93677187 + AT_rich Low_complexity Low_complexity 1 34 0 189 354 9 26 chr1 188516651 188516764 -93676900 - MIR SINE MIR -132 130 20 289 266 36 86 chr1 188517319 188517458 -93676206 + MIR SINE MIR 66 197 -65 278 265 0 0 chr1 188517555 188517623 -93676041 - MIR SINE MIR -2 260 193 2355 85 7 7 chr1 188517712 188518017 -93675647 - AluSp SINE Alu -8 305 1 1552 176 46 108 chr1 188518730 188518792 -93674872 + LTR37B LTR ERV1 1 65 -403 2565 70 0 6 chr1 188518792 188519104 -93674560 - AluY SINE Alu -1 310 1 1552 176 46 108 chr1 188519104 188519494 -93674170 + LTR37B LTR ERV1 65 423 -45 2075 117 11 14 chr1 188519494 188519796 -93673868 - AluSx SINE Alu 0 301 1 1552 176 46 108 chr1 188519796 188519840 -93673824 + LTR37B LTR ERV1 423 468 0 778 274 133 23 chr1 188520149 188520503 -93673161 - L2 LINE L2 -1 3312 2920 1900 254 135 12 chr1 188520505 188521244 -93672420 - L2 LINE L2 -504 2810 1981 2773 158 16 12 chr1 188521245 188521758 -93671906 + L1MB3 LINE L1 5666 6180 -3 190 167 28 0 chr1 188521793 188521829 -93671835 - L2 LINE L2 -1330 1984 1948 953 269 83 38 chr1 188521829 188522252 -93671412 - MLT1H LTR MaLR -2 547 106 642 261 40 71 chr1 188522318 188522490 -93671174 - L2 LINE L2 -1359 1955 1796 2125 140 0 3 chr1 188522490 188522790 -93670874 + AluSx SINE Alu 1 299 -13 642 261 40 71 chr1 188522790 188522939 -93670725 - L2 LINE L2 -1518 1796 1644 790 176 59 16 chr1 188522942 188523129 -93670535 - MSTB2 LTR MaLR 0 457 263 5810 105 22 27 chr1 188523132 188523747 -93669917 + MER4D LTR ERV1 1 618 -254 2414 103 5 41 chr1 188523747 188523986 -93669678 + THE1A LTR MaLR 1 224 -131 2029 139 10 0 chr1 188523986 188524280 -93669384 + AluSp SINE Alu 3 299 -14 2414 103 5 41 chr1 188524280 188524408 -93669256 + THE1A LTR MaLR 224 355 0 11775 94 10 2 chr1 188524408 188525976 -93667688 + THE1A-int LTR MaLR 1 1580 0 2145 148 17 6 chr1 188525976 188526327 -93667337 + THE1A LTR MaLR 1 355 0 5810 105 22 27 chr1 188526327 188526585 -93667079 + MER4D LTR ERV1 615 871 -1 233 190 127 38 chr1 188526611 188526690 -93666974 - MSTB2 LTR MaLR -280 177 92 2550 219 79 40 chr1 188526790 188527496 -93666168 + MER50 LTR ERV1 1 734 0 4157 200 60 34 chr1 188528113 188529642 -93664022 + L1MCb LINE L1 4 1577 -4850 1544 173 159 4 chr1 188529644 188529991 -93663673 + MLT2B1 LTR ERVL 1 442 -73 380 169 0 12 chr1 188529991 188530074 -93663590 + CT-rich Low_complexity Low_complexity 3 84 0 333 118 0 0 chr1 188530072 188530123 -93663541 + (TCCC)n Simple_repeat Simple_repeat 3 53 0 * 586 281 147 27 chr1 188530152 188530486 -93663178 + MLT1J2 LTR MaLR 69 442 -8 671 189 27 0 chr1 188530682 188530793 -93662871 - FLAM_A SINE Alu -19 114 1 330 288 50 34 chr1 188531082 188531350 -93662314 - MLT1I LTR MaLR -14 581 112 291 28 0 0 chr1 188532202 188532238 -93661426 + (TG)n Simple_repeat Simple_repeat 2 37 0 2197 157 25 75 chr1 188532733 188533216 -93660448 + MER31B LTR ERV1 8 466 0 22 35 0 0 chr1 188533815 188533844 -93659820 + GC_rich Low_complexity Low_complexity 1 29 0 56 67 0 0 chr1 188534060 188534165 -93659499 + GC_rich Low_complexity Low_complexity 1 105 0 25 31 0 0 chr1 188534171 188534203 -93659461 + GC_rich Low_complexity Low_complexity 1 32 0 34 55 0 0 chr1 188534342 188534397 -93659267 + GC_rich Low_complexity Low_complexity 1 55 0 366 326 34 46 chr1 188534913 188535241 -93658423 - L3 LINE CR1 -51 1526 1203 309 257 40 10 chr1 188535762 188535863 -93657801 + L2 LINE L2 3159 3262 -10 272 224 0 93 chr1 188536353 188536460 -93657204 + L1ME3 LINE L1 6068 6162 0 889 170 5 85 chr1 188537135 188537293 -93656371 + MER20 DNA MER1_type 25 163 -56 213 39 0 0 chr1 188537293 188537319 -93656345 + (CA)n Simple_repeat Simple_repeat 1 26 0 889 170 5 85 chr1 188537319 188537372 -93656292 + MER20 DNA MER1_type 163 219 0 475 220 21 28 chr1 188537408 188537549 -93656115 + Charlie2 DNA MER1_type 2434 2573 -289 194 269 104 45 chr1 188537551 188537752 -93655912 - L2 LINE L2 -248 3024 2812 400 263 94 47 chr1 188537916 188538087 -93655577 + MIR SINE MIR 72 250 -12 298 310 77 63 chr1 188539092 188539534 -93654130 - L2 LINE L2 -2 3270 2823 1269 93 0 0 chr1 188539664 188539825 -93653839 + AluSg/x SINE Alu 140 300 -12 716 199 51 28 chr1 188542611 188542787 -93650877 + MER104 DNA MER2_type 1 180 0 306 245 32 11 chr1 188543082 188543176 -93650488 + MIR SINE MIR 59 154 -108 2031 109 41 50 chr1 188544995 188545335 -93648329 + MER1B DNA MER1_type 1 337 0 265 48 0 48 chr1 188549556 188549598 -93644066 + L1PA15 LINE L1 6106 6145 -20 1728 184 3 28 chr1 188550493 188550813 -93642851 + AluJb SINE Alu 1 312 0 2104 112 4 0 chr1 188555128 188555404 -93638260 - AluSx SINE Alu -21 291 15 254 344 104 0 chr1 188555752 188555877 -93637787 - MIR SINE MIR -40 222 85 1624 150 20 30 chr1 188556221 188556521 -93637143 + AluJo SINE Alu 1 297 -15 333 294 109 97 chr1 188558675 188559025 -93634639 + HAL1 LINE L1 6 359 -2148 481 181 237 0 chr1 188559070 188559190 -93634474 - MER45A DNA AcHobo -23 155 10 328 236 116 56 chr1 188559426 188559659 -93634005 + HAL1 LINE L1 790 1036 -1471 232 274 147 25 chr1 188559731 188559935 -93633729 + HAL1 LINE L1 2279 2507 0 2395 64 0 29 chr1 188559981 188560294 -93633370 + AluY SINE Alu 1 304 -7 369 219 66 106 chr1 188560713 188560864 -93632800 + MIR SINE MIR 70 214 -48 2278 120 0 0 chr1 188561185 188561494 -93632170 - AluSx SINE Alu -3 309 1 222 283 0 0 chr1 188561618 188561664 -93632000 - MIR SINE MIR -129 79 34 2032 98 37 24 chr1 188562035 188562330 -93631334 - AluSx SINE Alu -13 299 1 752 166 69 35 chr1 188564353 188564498 -93629166 - FRAM SINE Alu -5 171 22 2447 110 74 11 chr1 188564579 188564943 -93628721 + MLT1B LTR MaLR 4 390 0 1796 172 0 3 chr1 188565000 188565291 -93628373 + AluJo SINE Alu 6 295 -17 207 0 0 0 chr1 188565971 188565994 -93627670 + (TTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 188566284 188566307 -93627357 + AT_rich Low_complexity Low_complexity 1 23 0 205 432 0 0 chr1 188566494 188566568 -93627096 + MIR SINE MIR 32 105 -103 2222 134 60 71 chr1 188566585 188566839 -93626825 + MSTB1 LTR MaLR 1 249 -183 2287 105 0 0 chr1 188566839 188567134 -93626530 + AluSq SINE Alu 1 295 -18 2222 134 60 71 chr1 188567134 188567313 -93626351 + MSTB1 LTR MaLR 249 429 -3 2017 123 0 7 chr1 188567436 188567751 -93625913 + AluSx SINE Alu 1 313 0 2321 82 0 0 chr1 188568510 188568801 -93624863 + AluSg1 SINE Alu 1 291 -18 1294 188 33 18 chr1 188568953 188569225 -93624439 + AluJo SINE Alu 1 276 -36 533 245 164 0 chr1 188569878 188570037 -93623627 + MIR SINE MIR 32 216 -46 21 0 0 0 chr1 188570446 188570467 -93623197 + GC_rich Low_complexity Low_complexity 1 21 0 446 216 210 17 chr1 188571106 188571282 -93622382 + L2 LINE L2 3102 3311 -2 488 281 7 0 chr1 188571628 188571763 -93621901 - L1ME LINE L1 -422 5699 5564 227 227 23 114 chr1 188571927 188572015 -93621649 - L2 LINE L2 -25 3288 3209 3660 108 211 34 chr1 188572648 188573564 -93620100 + LTR12 LTR ERV1 57 714 0 987 191 0 0 chr1 188573584 188573741 -93619923 + FRAM SINE Alu 1 157 -9 270 0 0 0 chr1 188573927 188573957 -93619707 + (T)n Simple_repeat Simple_repeat 1 30 0 4248 126 14 50 chr1 188574410 188574458 -93619206 - L1MB1 LINE L1 0 6168 6120 2189 107 0 10 chr1 188574458 188574749 -93618915 - AluSg SINE Alu -16 294 7 4248 126 14 50 chr1 188574749 188575400 -93618264 - L1MB1 LINE L1 -48 6120 5494 537 166 62 48 chr1 188576100 188576245 -93617419 - Charlie4 DNA MER1_type -1 1960 1814 467 181 32 11 chr1 188576304 188576398 -93617266 - MLT1A2 LTR MaLR 0 374 279 1543 207 0 17 chr1 188576978 188577277 -93616387 - AluJb SINE Alu -18 294 1 848 197 66 58 chr1 188577329 188577588 -93616076 + MIR SINE MIR 2 262 0 424 297 41 55 chr1 188577600 188577771 -93615893 - L1M4 LINE L1 -1843 4303 4136 986 183 118 0 chr1 188577771 188577957 -93615707 + MER3 DNA MER1_type 1 208 -1 424 297 41 55 chr1 188577957 188578078 -93615586 - L1M4 LINE L1 -2010 4136 4015 1319 204 63 63 chr1 188578100 188578463 -93615201 - MLT2B2 LTR ERVL -13 502 140 506 289 64 17 chr1 188579479 188579652 -93614012 - MIR SINE MIR -56 206 26 688 254 68 42 chr1 188579688 188579924 -93613740 - MIR SINE MIR -19 243 2 216 158 0 0 chr1 188580227 188580265 -93613399 + CT-rich Low_complexity Low_complexity 2 39 0 1609 193 3 10 chr1 188580307 188580602 -93613062 - AluJo SINE Alu -19 293 1 789 202 42 15 chr1 188581539 188581714 -93611950 + MER5B DNA MER1_type 1 162 -16 2203 97 0 40 chr1 188582111 188582432 -93611232 + AluSg SINE Alu 1 308 -2 211 323 92 0 chr1 188583436 188583501 -93610163 + L2 LINE L2 3239 3309 -4 1027 296 56 29 chr1 188583958 188584516 -93609148 + L1MC4a LINE L1 5260 5832 -1976 1705 102 12 12 chr1 188584711 188584956 -93608708 + L1PB1 LINE L1 5905 6149 -2 406 262 82 22 chr1 188585221 188585404 -93608260 - L1ME LINE L1 -312 5809 5616 1078 257 160 32 chr1 188585663 188586095 -93607569 + LTR16C LTR ERVL 4 490 -1 2067 92 52 0 chr1 188586500 188586817 -93606847 - AluSx SINE Alu 0 331 1 463 261 151 14 chr1 188586873 188587029 -93606635 - LTR33A LTR ERVL -122 399 266 2045 204 10 69 chr1 188587029 188587523 -93606141 + MLT1C LTR MaLR 1 465 -2 463 261 151 14 chr1 188587523 188587656 -93606008 - LTR33A LTR ERVL -255 266 38 215 373 32 25 chr1 188587840 188587998 -93605666 - MIR3 SINE MIR -22 186 28 342 239 35 71 chr1 188588310 188588423 -93605241 - L2 LINE L2 -23 3290 3182 4827 140 33 3 chr1 188588591 188589348 -93604316 - L1MC1 LINE L1 0 6333 5554 197 265 191 0 chr1 188589754 188589822 -93603842 - L2 LINE L2 -42 3230 3150 1191 217 86 58 chr1 188590073 188590602 -93603062 - MER39 LTR ERV1 0 707 1 184 285 32 113 chr1 188590642 188590828 -93602836 - L2 LINE L2 -296 2976 2806 293 229 42 21 chr1 188590899 188590995 -93602669 + Charlie5 DNA MER1_type 35 132 -2480 180 0 0 0 chr1 188590995 188591015 -93602649 + (TA)n Simple_repeat Simple_repeat 2 21 0 609 199 19 26 chr1 188591017 188591085 -93602579 + Charlie5 DNA MER1_type 2431 2498 -87 2319 104 3 0 chr1 188591085 188591384 -93602280 - AluSq SINE Alu -13 300 1 609 199 19 26 chr1 188591384 188591471 -93602193 + Charlie5 DNA MER1_type 2498 2585 0 477 385 30 11 chr1 188591482 188591752 -93601912 - L2 LINE L2 -557 2757 2483 431 211 38 60 chr1 188591772 188591905 -93601759 + MER77 LTR ERV1 66 195 -410 * 1711 255 42 68 chr1 188591880 188592527 -93601137 + MER21B LTR ERV1 98 727 -136 295 322 89 0 chr1 188592600 188592746 -93600918 - L2 LINE L2 -951 2363 2205 1509 205 3 7 chr1 188593227 188593515 -93600149 + AluJo SINE Alu 1 287 -25 2418 102 0 3 chr1 188593559 188593872 -93599792 + AluSx SINE Alu 1 312 0 194 267 67 0 chr1 188593873 188593918 -93599746 - L2 LINE L2 -82 3190 3143 323 270 200 9 chr1 188594398 188594513 -93599151 + MER5A DNA MER1_type 29 165 -24 521 338 12 0 chr1 188594995 188595155 -93598509 - MIR SINE MIR -93 169 8 1914 98 4 0 chr1 188596355 188596609 -93597055 - AluSp SINE Alu -58 255 1 865 328 73 8 chr1 188597269 188597653 -93596011 + L2 LINE L2 2379 2787 -527 579 256 116 23 chr1 188597658 188598088 -93595576 - MLT1J2 LTR MaLR -4 442 3 954 302 59 43 chr1 188598088 188598604 -93595060 + L2 LINE L2 2782 3304 -9 414 278 40 0 chr1 188598629 188598755 -93594909 - L3 LINE CR1 -688 889 759 301 287 24 81 chr1 188598972 188599118 -93594546 + MIR SINE MIR 10 141 -67 255 351 46 84 chr1 188600689 188600928 -93592736 - L2 LINE L2 -98 3174 2945 27 81 0 0 chr1 188602138 188602200 -93591464 + AT_rich Low_complexity Low_complexity 1 62 0 1935 180 19 25 chr1 188602589 188602956 -93590708 - MLT1A1 LTR MaLR 0 365 1 438 266 138 91 chr1 188603422 188603971 -93589693 + MLT1K LTR MaLR 14 588 0 618 104 0 0 chr1 188604160 188604256 -93589408 + (TA)n Simple_repeat Simple_repeat 2 97 0 803 153 19 19 chr1 188605354 188605511 -93588153 - BC200 scRNA scRNA -43 157 1 1091 274 63 37 chr1 188605929 188606793 -93586871 + L1MEd LINE L1 683 1567 -4562 24 32 0 0 chr1 188606901 188606932 -93586732 + AT_rich Low_complexity Low_complexity 1 31 0 1816 151 16 16 chr1 188608284 188608595 -93585069 + AluJo SINE Alu 1 311 -1 200 292 95 36 chr1 188609864 188610001 -93583663 + MER5A DNA MER1_type 44 188 -1 192 356 0 17 chr1 188610858 188610917 -93582747 + L2 LINE L2 3129 3186 -86 357 221 29 58 chr1 188612163 188612267 -93581397 - MLT1H LTR MaLR -75 474 374 627 197 94 96 chr1 188612307 188612548 -93581116 - MLT1H LTR MaLR -259 290 5 303 318 88 0 chr1 188616429 188616577 -93577087 + MIR SINE MIR 90 250 -12 886 132 7 22 chr1 188616585 188616721 -93576943 + FLAM_C SINE Alu 1 134 -9 526 278 38 75 chr1 188617748 188617960 -93575704 + MER115 DNA AcHobo 44 247 -446 26 0 0 0 chr1 188618600 188618626 -93575038 + AT_rich Low_complexity Low_complexity 1 26 0 976 208 26 44 chr1 188619003 188619182 -93574482 - MER58A DNA MER1_type -2197 223 47 1990 147 0 3 chr1 188619182 188619474 -93574190 + AluJo SINE Alu 1 291 -21 976 208 26 44 chr1 188619474 188619520 -93574144 - MER58A DNA MER1_type -2373 47 2 339 242 227 0 chr1 188619828 188619960 -93573704 + MIR3 SINE MIR 41 202 -6 360 297 206 7 chr1 188620058 188620213 -93573451 + MIR3 SINE MIR 20 205 -3 524 279 107 0 chr1 188622580 188622777 -93570887 - MIR SINE MIR -5 257 40 209 284 0 30 chr1 188623924 188623991 -93569673 + L2 LINE L2 3200 3264 -8 438 268 80 0 chr1 188624054 188624166 -93569498 + L2 LINE L2 3140 3260 -12 207 69 0 0 chr1 188624169 188624198 -93569466 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 26 0 0 0 chr1 188624330 188624356 -93569308 + AT_rich Low_complexity Low_complexity 1 26 0 1220 316 120 38 chr1 188626015 188627049 -93566615 - L2 LINE L2 -640 2674 1556 421 228 349 5 chr1 188627537 188627726 -93565938 + MLT1L LTR MaLR 8 261 -354 393 305 42 30 chr1 188627790 188627957 -93565707 + MLT1L LTR MaLR 355 523 -92 230 364 21 7 chr1 188629136 188629276 -93564388 + L2 LINE L2 2906 3047 -225 465 223 47 27 chr1 188635029 188635177 -93558487 - Charlie5 DNA MER1_type 0 2624 2474 439 286 60 30 chr1 188636413 188636546 -93557118 + MIR3 SINE MIR 18 154 -54 705 197 8 0 chr1 188636568 188636695 -93556969 - MER94 DNA DNA -6 128 1 896 288 49 12 chr1 188636732 188637059 -93556605 - MER102b DNA MER1_type -2 339 1 2765 33 0 0 chr1 188637660 188637966 -93555698 + AluY SINE Alu 1 306 -5 209 33 33 0 chr1 188638733 188638763 -93554901 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 485 279 58 17 chr1 188641001 188641173 -93552491 - MIR3 SINE MIR 0 208 30 664 182 15 15 chr1 188642701 188642833 -93550831 - MER94 DNA DNA -2 132 1 246 291 36 18 chr1 188643342 188643452 -93550212 - MIR SINE MIR -72 190 79 1005 176 28 32 chr1 188643541 188643757 -93549907 - MER20 DNA MER1_type -4 215 1 22 56 0 0 chr1 188643924 188643960 -93549704 + AT_rich Low_complexity Low_complexity 1 36 0 288 0 0 0 chr1 188645176 188645208 -93548456 + (CA)n Simple_repeat Simple_repeat 2 33 0 1119 205 44 73 chr1 188645636 188645978 -93547686 + MLT1K LTR MaLR 257 588 0 290 209 77 11 chr1 188645981 188646072 -93547592 + HAL1b LINE L1 1245 1341 -7 242 324 123 35 chr1 188646219 188646389 -93547275 - L3b LINE CR1 -90 1493 1309 582 249 82 68 chr1 188648290 188648583 -93545081 - L3 LINE CR1 -111 1466 1170 1851 136 24 10 chr1 188649778 188650072 -93543592 + AluSx SINE Alu 5 302 -10 227 226 97 0 chr1 188651374 188651436 -93542228 + L1ME3 LINE L1 6004 6071 -91 1866 163 171 11 chr1 188652727 188653096 -93540568 + MSTA LTR MaLR 1 428 0 383 380 44 32 chr1 188653098 188653656 -93540008 + L2 LINE L2 2481 3054 -218 209 257 54 0 chr1 188654892 188654966 -93538698 + MIR SINE MIR 99 176 -86 690 150 0 9 chr1 188655550 188655663 -93538001 - L1PA15 LINE L1 0 6165 6054 22 0 0 0 chr1 188655881 188655903 -93537761 + AT_rich Low_complexity Low_complexity 1 22 0 777 302 103 0 chr1 188655927 188656159 -93537505 + MIR SINE MIR 5 260 -2 766 274 39 35 chr1 188657710 188657940 -93535724 - MIR SINE MIR -21 241 11 400 300 115 29 chr1 188657926 188658169 -93535495 + L2 LINE L2 2562 2825 -489 * 27 0 0 0 chr1 188658582 188658609 -93535055 + AT_rich Low_complexity Low_complexity 1 27 0 240 336 53 0 chr1 188658868 188658981 -93534683 + L2 LINE L2 3154 3272 0 2008 134 31 22 chr1 188659625 188659982 -93533682 - MER46B DNA MER2_type -1 235 1 1470 123 9 9 chr1 188660015 188660242 -93533422 - AluSg/x SINE Alu -3 307 81 423 246 8 37 chr1 188660625 188660759 -93532905 + LTR67 LTR ERVL 402 531 -26 290 295 84 0 chr1 188661345 188661440 -93532224 + L2 LINE L2 2238 2340 -974 664 244 54 32 chr1 188661467 188661688 -93531976 + MLT1J LTR MaLR 39 264 -247 214 204 20 0 chr1 188661839 188661888 -93531776 + GA-rich Low_complexity Low_complexity 1 50 0 524 314 106 30 chr1 188661891 188661924 -93531740 + L2 LINE L2 2356 2385 -887 1949 150 4 0 chr1 188661924 188662226 -93531438 + AluSx SINE Alu 1 303 0 524 314 106 30 chr1 188662226 188662852 -93530812 + L2 LINE L2 2385 3077 -195 557 236 23 159 chr1 188663070 188663421 -93530243 + MLT1I LTR MaLR 81 383 -26 428 218 35 0 chr1 188663460 188663547 -93530117 - MIR SINE MIR -16 246 157 213 328 109 25 chr1 188664322 188664441 -93529223 + MIR SINE MIR 90 218 -44 402 294 219 6 chr1 188664897 188665057 -93528607 - MIR3 SINE MIR -1 207 14 245 322 103 51 chr1 188665539 188665753 -93527911 + L2 LINE L2 3044 3268 -4 1865 156 3 10 chr1 188665911 188666206 -93527458 - AluJb SINE Alu -13 299 7 307 353 60 0 chr1 188666233 188666349 -93527315 + L2 LINE L2 3190 3312 -1 2199 135 0 0 chr1 188666379 188666690 -93526974 + AluSx SINE Alu 1 311 -1 198 103 0 0 chr1 188666942 188666971 -93526693 + (CAA)n Simple_repeat Simple_repeat 2 30 0 320 275 11 11 chr1 188667138 188667229 -93526435 + GA-rich Low_complexity Low_complexity 2 92 0 328 235 173 62 chr1 188667747 188667926 -93525738 + MIR3 SINE MIR 5 203 -5 246 81 0 0 chr1 188669486 188669523 -93524141 + (CA)n Simple_repeat Simple_repeat 1 37 0 311 286 204 44 chr1 188669793 188670111 -93523553 + L1M2 LINE L1 869 1237 -5612 309 243 226 74 chr1 188669796 188670163 -93523501 - L1M2 LINE L1 -5921 928 506 * 26 30 0 0 chr1 188670178 188670211 -93523453 + GC_rich Low_complexity Low_complexity 1 33 0 194 286 89 0 chr1 188670791 188670847 -93522817 - L2 LINE L2 -51 3221 3161 296 256 22 0 chr1 188671627 188671717 -93521947 + LTR67 LTR ERVL 434 525 -32 456 250 83 25 chr1 188671851 188671971 -93521693 - MIR SINE MIR -116 146 20 2002 146 11 0 chr1 188672121 188672408 -93521256 + AluJb SINE Alu 1 290 -22 487 267 51 34 chr1 188672951 188673127 -93520537 + MER5A DNA MER1_type 8 186 -3 180 0 0 0 chr1 188674013 188674033 -93519631 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 321 214 95 63 chr1 188674376 188674467 -93519197 + L1ME4a LINE L1 5959 6057 -64 1907 143 0 29 chr1 188674467 188674775 -93518889 - AluJo SINE Alu -13 299 1 321 214 95 63 chr1 188674775 188674809 -93518855 + L1ME4a LINE L1 6057 6088 -33 189 107 0 0 chr1 188675135 188675163 -93518501 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 243 236 36 0 chr1 188675793 188675848 -93517816 - L2 LINE L2 0 3272 3216 560 261 45 6 chr1 188676752 188676928 -93516736 + MIR SINE MIR 69 251 -11 192 77 0 0 chr1 188676932 188676958 -93516706 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1273 248 81 32 chr1 188677134 188677678 -93515986 + L2 LINE L2 2738 3312 -1 1271 221 60 25 chr1 188677679 188678032 -93515632 + L2 LINE L2 2011 2375 -939 2128 136 0 0 chr1 188678174 188678469 -93515195 + AluJb SINE Alu 6 300 -12 679 314 124 36 chr1 188678547 188678843 -93514821 + L2 LINE L2 2368 2637 -676 860 142 25 0 chr1 188678843 188679005 -93514659 + L1MA8 LINE L1 6125 6290 -1 679 314 124 36 chr1 188679005 188679353 -93514311 + L2 LINE L2 2637 3068 -245 237 32 0 0 chr1 188679459 188679490 -93514174 + HSMAR1 DNA Mariner 1257 1287 0 3159 236 31 54 chr1 188679494 188680657 -93513007 + L1MEc LINE L1 100 1235 -5161 461 230 54 7 chr1 188680667 188680815 -93512849 + L1MA10 LINE L1 6180 6334 0 714 265 140 20 chr1 188680997 188681390 -93512274 + L1MEc LINE L1 2934 3373 -2842 324 0 0 0 chr1 188681395 188681431 -93512233 + (TG)n Simple_repeat Simple_repeat 2 37 0 275 252 73 26 chr1 188681473 188681499 -93512165 - L1MA10 LINE L1 -1 6333 6308 1882 228 127 5 chr1 188681499 188682073 -93511591 - L1ME1 LINE L1 -26 6140 5497 387 288 133 32 chr1 188682282 188682517 -93511147 + L1MEc LINE L1 3680 3955 -2260 1933 147 3 3 chr1 188682517 188682823 -93510841 + AluJb SINE Alu 1 306 -6 387 288 133 32 chr1 188682823 188682896 -93510768 + L1MEc LINE L1 3955 4019 -2196 22 56 0 0 chr1 188683099 188683135 -93510529 + AT_rich Low_complexity Low_complexity 1 36 0 303 257 50 40 chr1 188683311 188683412 -93510252 + L2 LINE L2 3141 3242 -30 200 188 42 21 chr1 188684308 188684356 -93509308 + L2 LINE L2 3224 3272 0 241 197 82 16 chr1 188684560 188684621 -93509043 + MIR3 SINE MIR 135 199 -9 2049 121 7 16 chr1 188684822 188685127 -93508537 + AluSq SINE Alu 1 302 -11 1075 110 128 13 chr1 188686231 188686458 -93507206 + L1MA7 LINE L1 6039 6291 0 421 240 191 4 chr1 188687641 188687801 -93505863 + MIR SINE MIR 62 243 -19 2153 114 0 7 chr1 188689116 188689415 -93504249 - AluSc SINE Alu -8 301 5 198 0 0 0 chr1 188689424 188689446 -93504218 + (T)n Simple_repeat Simple_repeat 1 22 0 2133 111 7 3 chr1 188689690 188689988 -93503676 - AluSp SINE Alu -13 300 2 26 0 0 0 chr1 188690124 188690150 -93503514 + AT_rich Low_complexity Low_complexity 1 26 0 1375 111 25 60 chr1 188691247 188691280 -93502384 + MER30 DNA MER1_type 4 37 -193 2352 85 0 3 chr1 188691280 188691575 -93502089 - AluSg SINE Alu -16 294 1 1375 111 25 60 chr1 188691575 188691776 -93501888 + MER30 DNA MER1_type 37 230 0 447 291 67 40 chr1 188691808 188691983 -93501681 - L1ME1 LINE L1 -808 5338 5169 870 228 0 0 chr1 188691983 188692150 -93501514 - FAM SINE Alu -4 171 5 447 291 67 40 chr1 188692150 188692497 -93501167 - L1ME1 LINE L1 -977 5169 4802 273 247 82 36 chr1 188692646 188692865 -93500799 - L1ME1 LINE L1 -1569 4577 4349 13818 126 34 19 chr1 188693136 188695245 -93498419 + Tigger1 DNA MER2_type 1 2150 -268 4098 88 10 34 chr1 188695245 188695868 -93497796 + L1PB1 LINE L1 5542 6149 -2 13818 126 34 19 chr1 188695868 188696137 -93497527 + Tigger1 DNA MER2_type 2150 2414 -4 333 230 93 39 chr1 188696176 188696244 -93497420 - L1ME1 LINE L1 -2214 3932 3869 1934 158 7 0 chr1 188696244 188696529 -93497135 - AluSx SINE Alu -25 287 1 333 230 93 39 chr1 188696529 188696664 -93497000 - L1ME1 LINE L1 -2277 3869 3718 27 0 0 0 chr1 188697225 188697252 -93496412 + AT_rich Low_complexity Low_complexity 1 27 0 792 179 30 0 chr1 188697565 188697699 -93495965 - FRAM SINE Alu -39 137 1 210 330 106 50 chr1 188698342 188698521 -93495143 + MIR SINE MIR 47 235 -27 595 232 104 5 chr1 188699964 188700184 -93493480 - HsTC2a DNA Tc2 -5 737 496 5398 202 60 32 chr1 188700184 188700408 -93493256 - L1MC4 LINE L1 -1 8041 7825 893 116 0 0 chr1 188700408 188700529 -93493135 + 5S rRNA rRNA 1 121 0 186 103 0 0 chr1 188700532 188700561 -93493103 + (TG)n Simple_repeat Simple_repeat 2 30 0 5398 202 60 32 chr1 188700561 188701043 -93492621 - L1MC4 LINE L1 -218 7824 7357 330 26 0 0 chr1 188701051 188701090 -93492574 + (TA)n Simple_repeat Simple_repeat 2 40 0 2225 112 0 10 chr1 188701090 188701385 -93492279 - AluSx SINE Alu -18 294 1 5398 202 60 32 chr1 188701385 188702003 -93491661 - L1MC4 LINE L1 -685 7357 6663 387 41 0 0 chr1 188702003 188702052 -93491612 + (TG)n Simple_repeat Simple_repeat 2 50 0 5398 202 60 32 chr1 188702052 188702224 -93491440 - L1MC4 LINE L1 -1379 6663 6497 263 333 26 0 chr1 188702522 188702678 -93490986 - L1M4 LINE L1 -1549 4597 4438 543 301 131 47 chr1 188702679 188703618 -93490046 - L1ME1 LINE L1 -2616 3530 2492 480 320 107 40 chr1 188703658 188704230 -93489434 - HAL1b LINE L1 -712 1586 85 1586 144 93 37 chr1 188704427 188704782 -93488882 + THE1C LTR MaLR 1 375 0 1618 203 0 10 chr1 188704866 188705184 -93488480 - AluJo SINE Alu 0 312 1 1492 220 76 21 chr1 188705897 188706320 -93487344 - HsTC2a DNA Tc2 -298 446 1 860 309 126 16 chr1 188706889 188707335 -93486329 - L2 LINE L2 -1 3312 2818 264 340 64 21 chr1 188707380 188707521 -93486143 - L2 LINE L2 -748 2566 2420 267 231 99 33 chr1 188707651 188707742 -93485922 - L2 LINE L2 -50 3222 3126 389 273 84 14 chr1 188708082 188708225 -93485439 - HAL1 LINE L1 -1608 899 747 261 281 81 81 chr1 188708529 188708714 -93484950 - HAL1 LINE L1 -2319 188 4 1775 116 0 4 chr1 188709178 188709420 -93484244 + AluSx SINE Alu 2 242 -70 255 203 87 0 chr1 188709427 188709496 -93484168 + HAL1 LINE L1 825 899 -1608 559 321 29 32 chr1 188710079 188710394 -93483270 + L2 LINE L2 3000 3313 0 6354 96 14 7 chr1 188710851 188711728 -93481936 + L1MA2 LINE L1 5422 6304 0 552 305 72 8 chr1 188712839 188713075 -93480589 + MIR SINE MIR 9 259 -3 1014 212 78 55 chr1 188713108 188713453 -93480211 + L1ME1 LINE L1 5811 6163 -3 3502 271 100 62 chr1 188713504 188713526 -93480138 + L2 LINE L2 38 58 -3256 1258 171 38 5 chr1 188713526 188713737 -93479927 + MER20 DNA MER1_type 1 218 -1 3502 271 100 62 chr1 188713737 188715388 -93478276 + L2 LINE L2 58 1775 -1539 242 303 56 11 chr1 188717273 188717362 -93476302 - MIR SINE MIR -150 112 20 1645 189 0 0 chr1 188717583 188717864 -93475800 + AluJo SINE Alu 9 289 -23 23 0 0 0 chr1 188718008 188718031 -93475633 + AT_rich Low_complexity Low_complexity 1 23 0 279 361 143 0 chr1 188718586 188718705 -93474959 - L2 LINE L2 -1 3271 3136 3000 178 88 43 chr1 188718705 188718902 -93474762 + L1MB3 LINE L1 4749 4936 -1248 1461 198 36 98 chr1 188718902 188719291 -93474373 + MLT1A1 LTR MaLR 1 365 0 3000 178 88 43 chr1 188719291 188720289 -93473375 + L1MB3 LINE L1 4936 6007 -177 400 153 82 0 chr1 188720308 188720393 -93473271 + L1MB3 LINE L1 6090 6181 -2 799 236 38 21 chr1 188720435 188720672 -93472992 - L2 LINE L2 -2354 960 720 6509 122 24 6 chr1 188720672 188722003 -93471661 + L1PB1 LINE L1 4801 6151 0 2246 254 49 47 chr1 188722014 188722425 -93471239 - L2 LINE L2 -2577 737 323 2010 164 0 0 chr1 188722425 188722736 -93470928 + AluJb SINE Alu 1 311 -1 2246 254 49 47 chr1 188722736 188723021 -93470643 - L2 LINE L2 -2991 323 40 629 269 155 51 chr1 188723319 188723655 -93470009 + L1MEd LINE L1 561 861 -1629 5735 68 46 17 chr1 188723655 188724881 -93468783 + SVA Other Other 11 1386 0 629 269 155 51 chr1 188724881 188725407 -93468257 + L1MEd LINE L1 861 1622 -868 556 311 67 57 chr1 188725582 188726092 -93467572 + L1MEd LINE L1 1806 2302 -3827 2070 125 3 13 chr1 188726092 188726405 -93467259 + AluSg SINE Alu 1 310 0 556 311 67 57 chr1 188726405 188726894 -93466770 + L1MEd LINE L1 2302 2785 -3344 643 287 99 20 chr1 188726959 188727548 -93466116 + L1MEd LINE L1 2904 3534 -2595 354 257 80 0 chr1 188727571 188727684 -93465980 + L1MEd LINE L1 3749 3870 -2259 589 151 140 0 chr1 188727684 188727777 -93465887 + FLAM_A SINE Alu 11 116 -26 198 103 0 0 chr1 188728039 188728068 -93465596 + (A)n Simple_repeat Simple_repeat 1 29 0 1201 195 57 73 chr1 188728997 188729381 -93464283 - MER39 LTR ERV1 -19 688 311 4209 248 108 36 chr1 188729386 188730862 -93462802 + L2 LINE L2 548 2130 -1184 445 268 18 15 chr1 188730862 188730988 -93462676 + MLT1C LTR MaLR 356 467 0 1029 258 92 37 chr1 188731011 188731488 -93462176 + L2 LINE L2 2736 3242 -71 4952 151 35 8 chr1 188731495 188732939 -93460725 - L1MA4A LINE L1 -20 6280 4749 215 219 188 0 chr1 188732939 188733003 -93460661 + L2 LINE L2 3233 3308 -5 252 143 0 0 chr1 188733005 188733047 -93460617 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1937 204 77 125 chr1 188733136 188734309 -93459355 - L1MC5 LINE L1 -26 7935 6820 1216 134 22 22 chr1 188734312 188734544 -93459120 - L1M1 LINE L1 -811 5492 5261 531 269 115 76 chr1 188734532 188734655 -93459009 - L1MC4a LINE L1 -1007 6801 6684 * 2626 203 93 35 chr1 188734655 188735222 -93458442 + MER77 LTR ERV1 3 602 -3 531 269 115 76 chr1 188735222 188735585 -93458079 - L1MC4a LINE L1 -1124 6684 6296 1484 164 0 4 chr1 188735591 188735829 -93457835 + AluJb SINE Alu 1 237 -75 180 0 0 0 chr1 188735843 188735863 -93457801 + (A)n Simple_repeat Simple_repeat 1 20 0 598 131 40 20 chr1 188735877 188735976 -93457688 + U13 snRNA snRNA 4 104 0 33 25 0 0 chr1 188736085 188736125 -93457539 + AT_rich Low_complexity Low_complexity 1 40 0 1867 234 55 60 chr1 188736272 188736922 -93456742 - L1MC4a LINE L1 -668 5637 5297 413 210 12 0 chr1 188737138 188737219 -93456445 - L2 LINE L2 0 3313 3232 453 305 45 13 chr1 188738029 188738183 -93455481 + MIR SINE MIR 37 195 -67 1961 80 0 0 chr1 188739721 188739959 -93453705 + AluSq SINE Alu 3 240 -73 499 235 50 56 chr1 188741230 188741409 -93452255 + LTR16C LTR ERVL 149 326 -165 236 278 111 0 chr1 188741489 188741561 -93452103 + LTR16C LTR ERVL 412 491 0 281 254 18 36 chr1 188741572 188741682 -93451982 + L1MEd LINE L1 1081 1188 -5017 492 204 187 24 chr1 188742740 188743011 -93450653 + L1MEd LINE L1 2135 2395 -3820 438 226 40 8 chr1 188743021 188743145 -93450519 + L1MEd LINE L1 2444 2571 -3644 * 1377 211 69 12 chr1 188743142 188743563 -93450101 + L1M4 LINE L1 4363 4807 -1339 416 308 38 23 chr1 188744002 188744135 -93449529 + MIR SINE MIR 16 150 -58 357 248 56 89 chr1 188744170 188744384 -93449280 + MLT1J2 LTR MaLR 27 233 -217 702 188 87 7 chr1 188745200 188745349 -93448315 + MIR SINE MIR 81 241 -21 1187 49 56 0 chr1 188745462 188745606 -93448058 + L1PA8 LINE L1 6008 6159 -13 198 0 0 0 chr1 188745609 188745631 -93448033 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 576 283 91 30 chr1 188746123 188746388 -93447276 + L2 LINE L2 2992 3272 0 249 260 193 72 chr1 188746630 188746811 -93446853 - L2 LINE L2 -2 3270 3068 26 30 0 0 chr1 188747339 188747372 -93446292 + AT_rich Low_complexity Low_complexity 1 33 0 235 318 24 0 chr1 188748307 188748392 -93445272 - L2 LINE L2 -1 3312 3226 729 242 57 35 chr1 188750465 188750692 -93442972 + MIR SINE MIR 17 248 -14 409 102 54 30 chr1 188750848 188751015 -93442649 + (TG)n Simple_repeat Simple_repeat 1 171 0 555 51 63 40 chr1 188751158 188751333 -93442331 + (TG)n Simple_repeat Simple_repeat 1 179 0 237 145 40 53 chr1 188751337 188751413 -93442251 + (GTGTG)n Simple_repeat Simple_repeat 1 75 0 514 46 69 46 chr1 188751413 188751587 -93442077 + (TG)n Simple_repeat Simple_repeat 2 179 0 271 323 100 9 chr1 188752288 188752418 -93441246 - MIR SINE MIR -71 191 51 2168 124 0 0 chr1 188752473 188752763 -93440901 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr1 188752809 188752845 -93440819 + AT_rich Low_complexity Low_complexity 1 36 0 238 399 40 29 chr1 188752873 188753046 -93440618 - L2 LINE L2 -60 3212 3038 391 147 63 32 chr1 188753047 188753142 -93440522 - L1ME4a LINE L1 -65 6056 5959 1860 154 20 7 chr1 188754626 188754931 -93438733 - AluJb SINE Alu -3 309 1 935 240 100 0 chr1 188755518 188755747 -93437917 - MIR SINE MIR 0 262 11 2375 32 0 25 chr1 188756143 188756424 -93437240 - AluY SINE Alu -3 308 35 1827 140 0 18 chr1 188756721 188757076 -93436588 - AluJb SINE Alu 0 351 2 204 40 0 0 chr1 188757199 188757224 -93436440 + (T)n Simple_repeat Simple_repeat 1 25 0 251 194 65 0 chr1 188757626 188757688 -93435976 - MIR SINE MIR -48 214 149 2043 76 69 4 chr1 188757702 188757977 -93435687 + AluSx SINE Alu 1 293 -19 1687 108 0 4 chr1 188758631 188758871 -93434793 + AluSq SINE Alu 75 313 0 409 185 167 9 chr1 188758890 188758998 -93434666 - MIR3 SINE MIR -73 135 11 286 209 105 47 chr1 188759011 188759097 -93434567 + MIR3 SINE MIR 67 157 -51 417 212 358 0 chr1 188759097 188759248 -93434416 - MER58C DNA MER1_type -10 205 1 511 279 173 33 chr1 188759632 188759997 -93433667 - L2 LINE L2 -5 3267 2852 212 233 33 0 chr1 188761574 188761634 -93432030 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 204 125 0 0 chr1 188761695 188761727 -93431937 + (CTTG)n Simple_repeat Simple_repeat 4 35 0 541 162 57 0 chr1 188761727 188761832 -93431832 - AluJb SINE Alu -19 293 183 288 0 0 0 chr1 188761832 188761864 -93431800 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 542 97 280 0 chr1 188761864 188761957 -93431707 - FLAM_C SINE Alu -23 120 2 477 287 59 61 chr1 188762120 188762428 -93431236 + L1MC4a LINE L1 5647 5800 -362 232 167 56 14 chr1 188762634 188762706 -93430958 + (TTAAA)n Simple_repeat Simple_repeat 4 78 0 356 272 128 3 chr1 188762829 188762936 -93430728 + MIR3 SINE MIR 78 194 -14 31 44 0 0 chr1 188763864 188763909 -93429755 + AT_rich Low_complexity Low_complexity 1 45 0 301 250 0 0 chr1 188764040 188764100 -93429564 - L2 LINE L2 0 3272 3213 799 302 37 12 chr1 188764199 188764444 -93429220 + MIR SINE MIR 12 262 0 389 288 34 17 chr1 188764562 188764680 -93428984 - L2 LINE L2 -182 3090 2971 992 255 17 17 chr1 188764863 188765098 -93428566 - MIR SINE MIR -1 261 27 386 331 157 40 chr1 188765213 188765931 -93427733 - L2 LINE L2 -652 2662 1861 212 288 200 25 chr1 188765982 188766062 -93427602 - MER91A DNA MER1_type -17 179 86 737 279 151 58 chr1 188766843 188767632 -93426032 + L1MC4a LINE L1 5369 6230 -1578 516 314 117 0 chr1 188768325 188768513 -93425151 + MIR SINE MIR 43 252 -10 876 242 99 18 chr1 188768685 188769176 -93424488 + MLT1G1 LTR MaLR 21 595 0 3268 258 105 43 chr1 188769181 188769463 -93424201 - L2 LINE L2 -323 2990 2727 2131 85 27 0 chr1 188769463 188769757 -93423907 - AluSx SINE Alu -10 302 1 3268 258 105 43 chr1 188769757 188770965 -93422699 - L2 LINE L2 -586 2727 1410 2100 121 3 3 chr1 188771480 188771786 -93421878 + AluSx SINE Alu 1 306 -6 375 301 23 75 chr1 188772368 188772541 -93421123 - MIR SINE MIR -37 225 62 510 314 164 9 chr1 188773265 188773491 -93420173 + MIR SINE MIR 2 262 0 1903 132 30 0 chr1 188773767 188774070 -93419594 + AluSx SINE Alu 1 312 0 430 294 63 63 chr1 188774174 188774443 -93419221 - L3b LINE CR1 -147 1436 1168 789 282 39 16 chr1 188775060 188775315 -93418349 + MIR SINE MIR 1 261 -1 313 261 11 65 chr1 188775337 188775429 -93418235 + L2 LINE L2 3186 3272 0 380 278 105 43 chr1 188776672 188776881 -93416783 + L1ME4a LINE L1 5873 6094 -27 180 276 35 0 chr1 188777000 188777058 -93416606 + L3b LINE CR1 1274 1333 -250 612 327 80 30 chr1 188778007 188778380 -93415284 - L2 LINE L2 -3 3269 2878 657 305 70 21 chr1 188778642 188778970 -93414694 - L2 LINE L2 -513 2801 2458 843 263 156 10 chr1 188778970 188779444 -93414220 + MLT1F LTR MaLR 1 534 -8 1005 315 60 17 chr1 188779451 188779931 -93413733 - L2 LINE L2 -852 2462 1962 625 219 192 0 chr1 188780104 188780255 -93413409 + MER5A DNA MER1_type 4 183 -6 628 249 35 24 chr1 188780401 188780570 -93413094 - MER5B DNA MER1_type -7 171 1 484 250 55 93 chr1 188781855 188782083 -93411581 - MIR SINE MIR -4 258 41 545 151 0 109 chr1 188782132 188782200 -93411464 - MER97a DNA MER1_type? -716 178 104 1918 101 15 4 chr1 188782200 188782467 -93411197 + AluSg SINE Alu 10 279 -31 198 0 0 0 chr1 188782467 188782489 -93411175 + (CA)n Simple_repeat Simple_repeat 1 22 0 545 151 0 109 chr1 188782489 188782538 -93411126 - MER97a DNA MER1_type? -788 106 73 231 281 0 0 chr1 188782722 188782779 -93410885 + L2 LINE L2 3003 3059 -213 244 271 57 14 chr1 188785357 188785427 -93408237 - L2 LINE L2 -58 3255 3183 370 240 146 0 chr1 188785467 188785563 -93408101 - MER81 DNA DNA -4 110 1 837 306 24 76 chr1 188785646 188786175 -93407489 - L1MC4a LINE L1 -1902 5906 5410 2220 79 7 0 chr1 188786175 188786465 -93407199 + AluY SINE Alu 1 292 -19 837 306 24 76 chr1 188786465 188786526 -93407138 - L1MC4a LINE L1 -2398 5410 5347 785 126 21 77 chr1 188786550 188786693 -93406971 - FLAM_C SINE Alu -7 136 2 301 270 43 26 chr1 188786695 188786810 -93406854 - L1MC4a LINE L1 -816 5330 5214 273 309 89 42 chr1 188787169 188787360 -93406304 + L2 LINE L2 2917 3116 -156 1843 160 0 0 chr1 188787864 188788164 -93405500 + AluJb SINE Alu 1 300 -12 293 302 203 29 chr1 188789615 188789857 -93403807 - L2 LINE L2 -1 3271 2988 227 239 0 0 chr1 188790263 188790309 -93403355 + MIR SINE MIR 41 86 -122 1919 100 0 11 chr1 188790562 188790833 -93402831 + AluSg SINE Alu 32 299 -11 570 289 93 34 chr1 188791043 188791334 -93402330 - MLT1J1 LTR MaLR -138 308 1 506 210 104 40 chr1 188792151 188792441 -93401223 + L1ME LINE L1 2072 2334 -3881 1494 175 3 34 chr1 188792447 188792560 -93401104 + AluJo SINE Alu 11 126 -186 2240 92 3 0 chr1 188792560 188792865 -93400799 - AluSc SINE Alu -3 306 1 1494 175 3 34 chr1 188792865 188793043 -93400621 + AluJo SINE Alu 126 293 -19 1329 275 131 20 chr1 188793089 188793577 -93400087 - MLT1G1 LTR MaLR 0 595 54 1046 231 26 76 chr1 188793591 188794089 -93399575 + L1ME LINE L1 2420 2892 -3323 1211 227 48 43 chr1 188794102 188794477 -93399187 + L1ME LINE L1 5479 5855 -384 1557 186 122 59 chr1 188794498 188794907 -93398757 - MSTB2 LTR MaLR 0 457 23 3494 186 63 58 chr1 188795575 188796078 -93397586 + L1ME1 LINE L1 5189 5688 -646 1915 139 14 0 chr1 188796078 188796373 -93397291 + AluSq SINE Alu 2 300 -13 3494 186 63 58 chr1 188796373 188796861 -93396803 + L1ME1 LINE L1 5688 6332 -2 21 36 0 0 chr1 188796861 188796889 -93396775 + AT_rich Low_complexity Low_complexity 1 28 0 1081 249 113 35 chr1 188797454 188797887 -93395777 - MLT1C LTR MaLR 0 467 1 2138 82 7 0 chr1 188798395 188798686 -93394978 + AluY SINE Alu 1 293 -18 358 279 29 29 chr1 188799493 188799629 -93394035 + MER112 DNA MER1_type 1 136 -124 395 161 0 12 chr1 188799644 188799725 -93393939 + CT-rich Low_complexity Low_complexity 3 82 0 304 275 55 9 chr1 188799726 188799835 -93393829 + MER112 DNA MER1_type 146 259 -1 1611 234 129 28 chr1 188801464 188801968 -93391696 - MLT1H1 LTR MaLR 0 555 1 688 291 169 38 chr1 188802201 188802663 -93391001 - L2 LINE L2 -2 3311 2791 186 233 0 0 chr1 188802716 188802776 -93390888 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 13960 106 28 6 chr1 188803201 188805213 -93388451 + L1PBa LINE L1 1 2057 -4806 247 254 34 0 chr1 188805479 188805538 -93388126 + LTR19A LTR ERV1 393 453 -33 1147 74 0 6 chr1 188805569 188805732 -93387932 + L1PBa LINE L1 2036 2197 -4666 4048 103 11 95 chr1 188805735 188806454 -93387210 + L1PB2 LINE L1 5493 6151 0 342 284 0 10 chr1 188806953 188807055 -93386609 + (CAACT)n Simple_repeat Simple_repeat 5 105 0 601 236 48 24 chr1 188807202 188807367 -93386297 + MIR SINE MIR 21 189 -73 189 203 14 81 chr1 188810989 188811063 -93382601 - L2 LINE L2 -111 3202 3134 2200 119 6 6 chr1 188811193 188811505 -93382159 - AluSq SINE Alu -1 312 1 449 313 60 27 chr1 188812454 188812754 -93380910 + L1ME4a LINE L1 5808 6117 -4 223 256 33 50 chr1 188813282 188813403 -93380261 + MIR SINE MIR 88 206 -56 645 274 144 14 chr1 188814173 188814589 -93379075 - L2 LINE L2 -2 3311 2842 226 260 94 47 chr1 188814630 188814757 -93378907 - L2 LINE L2 -586 2728 2596 259 299 94 52 chr1 188814820 188815058 -93378606 + MIR SINE MIR 1 249 -13 774 105 0 125 chr1 188815185 188815337 -93378327 - FLAM_C SINE Alu 0 133 1 238 41 0 61 chr1 188815370 188815419 -93378245 + LTR66 LTR ERVL 394 439 -171 300 257 0 0 chr1 188815419 188815532 -93378132 + (TA)n Simple_repeat Simple_repeat 1 113 0 2150 106 10 3 chr1 188815573 188815865 -93377799 - AluSq SINE Alu -19 294 1 184 303 53 13 chr1 188816606 188816682 -93376982 - MIR SINE MIR -82 180 102 267 197 14 42 chr1 188816704 188816775 -93376889 - MLT1K LTR MaLR 0 588 520 1858 155 13 20 chr1 188817218 188817521 -93376143 - AluSx SINE Alu -11 301 1 358 245 86 55 chr1 188817567 188817730 -93375934 - MER91B DNA MER1_type -5 185 18 2152 140 0 7 chr1 188818168 188818475 -93375189 - AluSx SINE Alu -3 309 5 1675 160 31 7 chr1 188818478 188818766 -93374898 - AluJo SINE Alu -17 295 1 1049 313 91 78 chr1 188818958 188819997 -93373667 + L3 LINE CR1 523 1574 -3 202 114 0 29 chr1 188820912 188820947 -93372717 + (GGA)n Simple_repeat Simple_repeat 1 34 0 719 162 0 8 chr1 188824875 188824992 -93368672 + FLAM_A SINE Alu 1 116 -17 914 260 185 6 chr1 188825850 188826254 -93367410 - LTR33 LTR ERVL -4 517 1 2270 89 31 0 chr1 188826379 188826672 -93366992 + AluSp SINE Alu 1 302 -11 848 234 123 62 chr1 188827011 188827499 -93366165 - LTR33 LTR ERVL -1 520 3 209 258 0 32 chr1 188828752 188828814 -93364850 + MIR SINE MIR 203 262 0 209 264 50 41 chr1 188828894 188829015 -93364649 - MIR SINE MIR -1 261 140 355 228 61 9 chr1 188829551 188829665 -93363999 + LTR33 LTR ERVL 381 500 -21 310 241 27 54 chr1 188829720 188829832 -93363832 - L2 LINE L2 -37 3276 3168 326 167 98 114 chr1 188829847 188829979 -93363685 + L2 LINE L2 3153 3282 -31 412 232 40 53 chr1 188830012 188830163 -93363501 - L2 LINE L2 -177 3136 2988 356 298 18 26 chr1 188830191 188830305 -93363359 - MIR SINE MIR -126 136 24 247 245 0 0 chr1 188830317 188830370 -93363294 + MIR SINE MIR 191 243 -19 396 266 76 32 chr1 188831265 188831327 -93362337 - MIR SINE MIR -84 178 120 2051 194 14 0 chr1 188831327 188831687 -93361977 + MLT1A1 LTR MaLR 1 365 0 396 266 76 32 chr1 188831687 188831782 -93361882 - MIR SINE MIR -142 120 14 227 292 0 14 chr1 188832670 188832742 -93360922 - L2 LINE L2 -1 3312 3242 266 331 50 0 chr1 188834014 188834153 -93359511 - MIR SINE MIR -110 152 7 41 0 0 0 chr1 188834197 188834238 -93359426 + AT_rich Low_complexity Low_complexity 1 41 0 419 310 83 1 chr1 188834782 188834988 -93358676 - MIR SINE MIR -8 254 35 355 258 157 107 chr1 188835925 188836244 -93357420 - L1ME4a LINE L1 -50 6071 5710 613 164 16 41 chr1 188836244 188836389 -93357275 + FLAM_A SINE Alu 1 142 0 355 258 157 107 chr1 188836389 188836630 -93357034 - L1ME4a LINE L1 -411 5710 5482 233 139 0 0 chr1 188836675 188836711 -93356953 - L2 LINE L2 -21 3251 3216 25 0 0 0 chr1 188836924 188836949 -93356715 + AT_rich Low_complexity Low_complexity 1 25 0 362 167 0 0 chr1 188836979 188837039 -93356625 - L1M4 LINE L1 -2456 3690 3631 681 292 59 4 chr1 188837142 188837388 -93356276 - MLT1F LTR MaLR -280 287 6 187 330 133 23 chr1 188837441 188837614 -93356050 + L2 LINE L2 2926 3117 -155 208 284 165 0 chr1 188838015 188838124 -93355540 + MIR SINE MIR 19 145 -63 3633 155 86 35 chr1 188838362 188839086 -93354578 - L1M4c LINE L1 -5606 778 18 831 263 0 5 chr1 188839086 188839272 -93354392 + MER58A DNA MER1_type 39 223 -1 29 47 0 0 chr1 188839339 188839382 -93354282 + AT_rich Low_complexity Low_complexity 1 43 0 249 83 0 0 chr1 188839564 188839600 -93354064 + (TG)n Simple_repeat Simple_repeat 1 36 0 1600 126 0 4 chr1 188839600 188839830 -93353834 + AluSg/x SINE Alu 74 302 -8 273 119 0 0 chr1 188840946 188840988 -93352676 + (TA)n Simple_repeat Simple_repeat 2 43 0 2234 107 7 7 chr1 188840988 188841296 -93352368 - AluSx SINE Alu -4 308 1 2236 108 3 0 chr1 188842421 188842726 -93350938 + AluSx SINE Alu 1 306 -6 612 49 12 12 chr1 188844253 188844335 -93349329 + LOR1a LTR ERV1 18 99 -398 2886 127 0 0 chr1 188844362 188844764 -93348900 + LOR1a LTR ERV1 96 497 0 2265 189 40 14 chr1 188844799 188845244 -93348420 + MSTB2 LTR MaLR 1 457 0 202 256 0 0 chr1 188845284 188845327 -93348337 - MIR SINE MIR -139 123 81 2006 127 64 20 chr1 188847809 188847968 -93345696 - Tigger3(Golem) DNA MER2_type -342 2686 2535 2352 90 0 10 chr1 188847968 188848268 -93345396 - AluSx SINE Alu -15 297 1 2006 127 64 20 chr1 188848268 188848501 -93345163 - Tigger3(Golem) DNA MER2_type -493 2535 2277 551 215 37 0 chr1 188848489 188848596 -93345068 - Tigger3(Golem) DNA MER2_type -2918 111 1 * 770 190 19 114 chr1 188848598 188848809 -93344855 - MER8 DNA MER2_type 0 239 49 361 336 32 99 chr1 188848913 188849258 -93344406 + L2 LINE L2 2941 3262 -10 553 69 0 0 chr1 188849359 188849431 -93344233 - AluS SINE Alu -240 72 1 3568 78 2 47 chr1 188849431 188849769 -93343895 - HSMAR2 DNA Mariner -220 1082 773 2203 121 0 0 chr1 188849769 188850067 -93343597 - AluSx SINE Alu -14 298 1 3568 78 2 47 chr1 188850067 188850240 -93343424 - HSMAR2 DNA Mariner -529 773 594 3824 114 12 21 chr1 188850279 188850372 -93343292 - HSMAR2 DNA Mariner -694 608 516 1938 103 8 0 chr1 188850372 188850633 -93343031 - AluSp SINE Alu -12 301 39 3824 114 12 21 chr1 188850633 188851120 -93342544 - HSMAR2 DNA Mariner -786 516 33 1756 109 0 0 chr1 188851223 188851452 -93342212 + AluSq SINE Alu 68 296 -17 1298 117 9 30 chr1 188851453 188851684 -93341980 + HSMAR2 DNA Mariner 1077 1302 0 432 182 0 0 chr1 188851684 188851772 -93341892 + (TG)n Simple_repeat Simple_repeat 1 88 0 2149 120 0 20 chr1 188851799 188852098 -93341566 + AluSx SINE Alu 1 293 -19 252 0 0 0 chr1 188852098 188852126 -93341538 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 883 223 50 86 chr1 188853221 188853317 -93340347 - L1M4 LINE L1 -2668 3478 3380 1614 77 0 0 chr1 188853317 188853513 -93340151 - AluSg/x SINE Alu -18 294 99 2273 73 7 0 chr1 188853521 188853810 -93339854 - AluY SINE Alu -20 291 1 883 223 50 86 chr1 188853810 188853902 -93339762 - L1M4 LINE L1 -2773 3373 3279 2264 102 26 3 chr1 188853902 188854207 -93339457 - AluSx SINE Alu 0 312 1 883 223 50 86 chr1 188854207 188854429 -93339235 - L1M4 LINE L1 -2867 3279 3073 1276 179 0 0 chr1 188854446 188854647 -93339017 - AluJo SINE Alu -21 291 91 400 148 125 0 chr1 188854655 188854743 -93338921 - L1M4 LINE L1 -3436 2710 2612 1314 152 0 52 chr1 188854743 188854973 -93338691 - AluJb SINE Alu -2 310 93 27 0 0 0 chr1 188854980 188855007 -93338657 + AT_rich Low_complexity Low_complexity 1 27 0 410 233 68 23 chr1 188855016 188855149 -93338515 - L1MD3 LINE L1 -1 7994 7856 332 189 14 0 chr1 188855540 188855614 -93338050 - L1MB8 LINE L1 0 6178 6104 1624 214 9 6 chr1 188855810 188856152 -93337512 - L1MB7 LINE L1 -80 6104 5762 23 0 0 0 chr1 188856234 188856257 -93337407 + AT_rich Low_complexity Low_complexity 1 23 0 210 71 0 0 chr1 188856482 188856510 -93337154 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 211 295 66 0 chr1 188858119 188858180 -93335484 + MIR SINE MIR 42 106 -102 586 305 11 0 chr1 188858214 188858391 -93335273 - MER117 DNA MER1_type -1 196 18 194 0 39 0 chr1 188858542 188858568 -93335096 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 404 239 11 0 chr1 188858570 188858662 -93335002 - FLAM_A SINE Alu -27 115 23 356 273 53 13 chr1 188858848 188858998 -93334666 + MIR SINE MIR 35 190 -72 2276 92 6 44 chr1 188859000 188859316 -93334348 + AluSg1 SINE Alu 1 304 -5 1649 167 0 17 chr1 188859584 188859871 -93333793 + AluJb SINE Alu 1 282 -30 2008 136 0 0 chr1 188859875 188860162 -93333502 + AluSq SINE Alu 4 290 -23 2144 95 3 14 chr1 188860166 188860461 -93333203 + AluSx SINE Alu 1 292 -20 40 49 0 0 chr1 188860627 188860688 -93332976 + AT_rich Low_complexity Low_complexity 1 61 0 335 266 89 6 chr1 188860690 188860848 -93332816 - L1ME4a LINE L1 -131 5990 5820 4167 112 38 3 chr1 188862260 188862874 -93330790 - MER41B LTR ERV1 0 635 1 2172 114 3 10 chr1 188862998 188863304 -93330360 + AluSx SINE Alu 1 304 -8 919 240 162 36 chr1 188863549 188863908 -93329756 - MLT1I LTR MaLR -2 407 4 542 209 45 34 chr1 188863997 188864155 -93329509 + MSTC LTR MaLR 1 172 -224 509 176 0 0 chr1 188864258 188864371 -93329293 + AluS SINE Alu 222 334 0 2155 185 3 5 chr1 188864375 188864765 -93328899 - L1MB3 LINE L1 -23 6160 5772 9104 161 20 16 chr1 188864771 188865288 -93328376 - L1M4 LINE L1 -3404 2978 2464 2018 161 24 6 chr1 188865288 188865629 -93328035 + MER7A DNA MER2_type 2 346 0 9104 161 20 16 chr1 188865629 188867148 -93326516 - L1M4 LINE L1 -3918 2464 922 2066 131 0 3 chr1 188867149 188867447 -93326217 + AluSq SINE Alu 1 297 -16 1358 131 86 33 chr1 188867616 188867637 -93326027 + Tigger3(Golem) DNA MER2_type 2771 2789 -239 1786 163 3 13 chr1 188867637 188867950 -93325714 - AluJb SINE Alu -2 310 1 1358 131 86 33 chr1 188867950 188868173 -93325491 + Tigger3(Golem) DNA MER2_type 2789 3028 0 425 252 113 13 chr1 188868402 188868553 -93325111 - MIR SINE MIR -10 252 87 1500 201 0 7 chr1 188868972 188869245 -93324419 + AluJo SINE Alu 11 281 -31 577 138 0 0 chr1 188870268 188870355 -93323309 + L1PA16 LINE L1 5821 5907 -259 492 169 0 0 chr1 188870355 188870432 -93323232 - LTR54 LTR ERV1 -433 77 1 2148 114 0 0 chr1 188870624 188870913 -93322751 - AluSg1 SINE Alu -20 289 1 38 39 0 0 chr1 188870922 188870974 -93322690 + AT_rich Low_complexity Low_complexity 1 52 0 734 310 29 35 chr1 188872182 188872527 -93321137 + MLT1I LTR MaLR 65 407 -2 490 308 29 29 chr1 188872527 188872766 -93320898 - MER102a DNA MER1_type -17 313 75 198 71 0 0 chr1 188873346 188873374 -93320290 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 223 270 99 45 chr1 188874409 188874520 -93319144 - L2 LINE L2 0 3272 3156 275 327 9 18 chr1 188874639 188874749 -93318915 - L2 LINE L2 -223 3049 2941 2224 17 0 0 chr1 188874786 188875027 -93318637 + AluYa5 SINE Alu 30 270 -41 209 300 0 17 chr1 188875229 188875289 -93318375 + MIR SINE MIR 32 90 -118 1715 158 23 0 chr1 188875410 188875720 -93317944 + L1MC3 LINE L1 7469 7785 0 904 234 14 12 chr1 188876322 188876569 -93317095 - MIR SINE MIR -13 249 9 1872 168 22 28 chr1 188876824 188877188 -93316476 - MLT1A1 LTR MaLR 0 365 4 2313 206 38 7 chr1 188877191 188877643 -93316021 - MLT1A1-int LTR MaLR 0 1735 1270 631 106 0 26 chr1 188877726 188877839 -93315825 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 269 192 41 27 chr1 188877839 188877912 -93315752 - MLT1A1-int LTR MaLR -487 884 811 3251 205 12 6 chr1 188877962 188878620 -93315044 - MLT1A1-int LTR MaLR -1073 662 1 237 200 0 0 chr1 188878620 188878665 -93314999 - MLT1A1 LTR MaLR 0 374 330 288 146 0 0 chr1 188878766 188878814 -93314850 + MLT1F1 LTR MaLR 516 563 -4 1838 160 0 19 chr1 188879052 188879370 -93314294 + AluJb SINE Alu 1 312 0 658 281 0 0 chr1 188881487 188881633 -93312031 - MLT1I LTR MaLR 0 409 264 371 240 61 107 chr1 188882293 188882489 -93311175 + MER5B DNA MER1_type 3 178 0 2001 104 38 21 chr1 188882737 188883026 -93310638 + AluSq SINE Alu 1 294 -19 1229 100 0 0 chr1 188883026 188883211 -93310453 + AluSc SINE Alu 129 316 0 23 33 0 0 chr1 188883584 188883614 -93310050 + AT_rich Low_complexity Low_complexity 1 30 0 1925 241 112 2 chr1 188883790 188884264 -93309400 - MLT1F LTR MaLR -1 541 16 312 242 111 10 chr1 188884272 188884371 -93309293 - MLT1I LTR MaLR -276 133 25 504 291 31 0 chr1 188885298 188885425 -93308239 + MLT1H1 LTR MaLR 4 134 -421 2228 96 3 53 chr1 188885566 188885888 -93307776 - AluSx SINE Alu -6 306 1 200 303 34 34 chr1 188886206 188886295 -93307369 - MER5A DNA MER1_type -96 93 5 2160 156 3 40 chr1 188886650 188887028 -93306636 + THE1B LTR MaLR 1 364 0 335 235 82 10 chr1 188888257 188888355 -93305309 + L2 LINE L2 3168 3272 0 230 250 163 0 chr1 188888486 188888578 -93305086 - MER91A DNA MER1_type 0 196 90 2251 230 82 38 chr1 188889127 188889788 -93303876 + L1MEc LINE L1 36 725 -5671 1812 144 9 41 chr1 188889823 188890143 -93303521 - AluJb SINE Alu 0 312 3 21 0 0 0 chr1 188890737 188890758 -93302906 + AT_rich Low_complexity Low_complexity 1 21 0 368 240 121 121 chr1 188891037 188891449 -93302215 - MLT1K LTR MaLR 0 588 177 247 284 0 27 chr1 188892335 188892409 -93301255 - MER5A DNA MER1_type -3 186 115 241 284 10 59 chr1 188892353 188892455 -93301209 + MER5B DNA MER1_type 22 118 -60 * 2143 108 3 7 chr1 188893749 188894062 -93299602 + AluSp SINE Alu 1 312 0 273 359 8 8 chr1 188894137 188894254 -93299410 - L2 LINE L2 0 3313 3197 195 42 0 0 chr1 188894268 188894292 -93299372 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1618 163 166 34 chr1 188894846 188895196 -93298468 - MSTD LTR MaLR 0 396 1 1061 227 72 8 chr1 188895196 188895447 -93298217 + MLT1A1 LTR MaLR 24 290 -75 211 279 101 0 chr1 188895593 188895672 -93297992 - L2 LINE L2 -191 3081 2995 720 245 86 68 chr1 188895679 188895742 -93297922 - MER21B LTR ERV1 -125 738 678 1842 199 55 105 chr1 188895742 188896325 -93297339 + MLT2B3 LTR ERVL 1 554 0 720 245 86 68 chr1 188896325 188896587 -93297077 - MER21B LTR ERV1 -185 678 407 860 264 111 17 chr1 188897578 188897614 -93296050 - L2 LINE L2 0 3313 3282 2956 170 10 57 chr1 188897614 188898195 -93295469 + MLT2B3 LTR ERVL 1 554 0 860 264 111 17 chr1 188898195 188898518 -93295146 - L2 LINE L2 -31 3282 2920 4685 77 77 8 chr1 188899421 188900067 -93293597 + LTR8 LTR ERV1 1 691 0 210 71 0 0 chr1 188900723 188900751 -93292913 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 426 260 42 109 chr1 188901113 188901378 -93292286 + MLT1J LTR MaLR 219 465 -46 182 437 35 0 chr1 188901546 188901688 -93291976 - L2 LINE L2 -2859 455 309 2168 111 3 7 chr1 188902129 188902457 -93291207 + AluSq SINE Alu 1 313 0 570 266 40 6 chr1 188902988 188903165 -93290499 - MIR SINE MIR -51 211 29 2157 237 109 26 chr1 188904077 188904445 -93289219 - MER20B DNA MER1_type -2 782 446 1892 168 0 3 chr1 188904445 188904748 -93288916 - AluJo SINE Alu -10 302 1 2157 237 109 26 chr1 188904748 188905101 -93288563 - MER20B DNA MER1_type -338 446 1 186 71 0 0 chr1 188907264 188907292 -93286372 + (CCCCCA)n Simple_repeat Simple_repeat 3 30 0 1549 192 18 75 chr1 188907385 188907771 -93285893 - MLT1A1 LTR MaLR 0 365 2 252 0 0 0 chr1 188908795 188908823 -93284841 + (CA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr1 188909270 188909292 -93284372 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr1 188909674 188909708 -93283956 + (CA)n Simple_repeat Simple_repeat 2 35 0 222 0 35 0 chr1 188910504 188910533 -93283131 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 2061 100 41 0 chr1 188910533 188910803 -93282861 - AluSx SINE Alu -31 281 1 193 262 68 87 chr1 188910994 188911097 -93282567 - MIR SINE MIR -131 131 31 226 163 0 0 chr1 188911123 188911166 -93282498 - MSTB2 LTR MaLR -15 442 400 207 0 0 0 chr1 188912361 188912384 -93281280 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 782 154 23 15 chr1 188912512 188912642 -93281022 - FLAM_C SINE Alu -2 131 1 21 36 0 0 chr1 188912871 188912899 -93280765 + AT_rich Low_complexity Low_complexity 1 28 0 423 319 48 43 chr1 188913405 188913612 -93280052 - MIR3 SINE MIR 0 208 1 245 242 65 0 chr1 188914490 188914552 -93279112 - MIR SINE MIR -110 152 87 25 0 0 0 chr1 188914717 188914742 -93278922 + AT_rich Low_complexity Low_complexity 1 25 0 220 250 91 53 chr1 188914795 188914927 -93278737 - L2 LINE L2 -848 2466 2330 350 244 191 46 chr1 188915832 188915963 -93277701 + MIR3 SINE MIR 2 151 -57 200 262 238 32 chr1 188916410 188916536 -93277128 - MER5A DNA MER1_type -1 188 37 374 361 14 35 chr1 188916634 188916778 -93276886 + MIR3 SINE MIR 22 162 -46 316 315 86 23 chr1 188918413 188918670 -93274994 + L1M4 LINE L1 5077 5349 -797 22 35 0 0 chr1 188918915 188918944 -93274720 + AT_rich Low_complexity Low_complexity 1 29 0 2228 78 4 0 chr1 188919293 188919601 -93274063 + AluSp SINE Alu 1 309 0 642 318 39 13 chr1 188920093 188920326 -93273338 - MIR SINE MIR -1 261 23 257 279 0 0 chr1 188921345 188921406 -93272258 + CT-rich Low_complexity Low_complexity 6 66 0 274 261 63 54 chr1 188921642 188921753 -93271911 - L2 LINE L2 -1 3312 3201 185 271 0 0 chr1 188921737 188921785 -93271879 + MIR SINE MIR 158 205 -57 * 2364 87 0 10 chr1 188921897 188922208 -93271456 - AluSx SINE Alu -4 308 1 1501 256 79 32 chr1 188922640 188923132 -93270532 - MLT1E LTR MaLR -77 516 2 256 246 0 0 chr1 188923145 188923206 -93270458 + Charlie1 DNA MER1_type 2701 2761 0 1669 158 9 54 chr1 188923672 188923844 -93269820 - AluJb SINE Alu -9 303 150 2360 96 3 0 chr1 188923844 188924145 -93269519 - AluSp SINE Alu -11 302 1 1669 158 9 54 chr1 188924145 188924289 -93269375 - AluJb SINE Alu -162 150 1 27 49 0 0 chr1 188924908 188924949 -93268715 + AT_rich Low_complexity Low_complexity 1 41 0 270 0 0 0 chr1 188925471 188925501 -93268163 + (TG)n Simple_repeat Simple_repeat 1 30 0 1609 174 41 24 chr1 188925507 188925800 -93267864 - AluJb SINE Alu -14 298 1 1119 240 0 39 chr1 188927185 188927439 -93266225 - MIR SINE MIR 0 262 19 274 353 22 15 chr1 188928359 188928495 -93265169 - MIR SINE MIR -115 147 11 913 194 13 0 chr1 188928842 188928997 -93264667 + AluJo SINE Alu 3 159 -153 37 23 0 0 chr1 188929070 188929114 -93264550 + AT_rich Low_complexity Low_complexity 1 44 0 2065 123 0 40 chr1 188929205 188929529 -93264135 - AluSx SINE Alu -1 311 1 759 251 36 20 chr1 188929758 188930009 -93263655 + L1MC4a LINE L1 5674 5928 -1880 1025 126 17 51 chr1 188930043 188930218 -93263446 + FAM SINE Alu 1 47 -2 667 115 60 110 chr1 188930877 188930947 -93262717 - MER104 DNA MER2_type -1722 176 104 1836 163 7 7 chr1 188930947 188931242 -93262422 + AluJo SINE Alu 1 295 -17 667 115 60 110 chr1 188931242 188931353 -93262311 - MER104 DNA MER2_type -1794 104 4 208 328 17 0 chr1 188931443 188931501 -93262163 + L2 LINE L2 3254 3312 -1 259 298 38 38 chr1 188931557 188931575 -93262089 - L2 LINE L2 -4 3309 3292 2374 78 10 7 chr1 188931575 188931883 -93261781 + AluSq SINE Alu 1 309 -4 259 298 38 38 chr1 188931883 188931995 -93261669 - L2 LINE L2 -20 3293 3179 * 565 380 74 7 chr1 188931982 188932440 -93261224 - L2 LINE L2 -1011 2303 1815 353 239 53 44 chr1 188932637 188932750 -93260914 + MIR SINE MIR 11 124 -84 703 215 0 0 chr1 188933565 188933695 -93259969 - FLAM_A SINE Alu -3 130 1 405 0 0 0 chr1 188933821 188933866 -93259798 + (TA)n Simple_repeat Simple_repeat 2 46 0 210 37 0 0 chr1 188934110 188934137 -93259527 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr1 188934387 188934415 -93259249 + AT_rich Low_complexity Low_complexity 1 28 0 451 286 15 58 chr1 188934620 188934717 -93258947 - MLT1J LTR MaLR -200 311 226 1648 168 4 0 chr1 188934717 188934973 -93258691 - AluJb SINE Alu -18 294 38 451 286 15 58 chr1 188934973 188935081 -93258583 - MLT1J LTR MaLR -285 226 115 1375 210 89 47 chr1 188935219 188935623 -93258041 - L1MD2 LINE L1 -238 6121 5701 1528 165 20 47 chr1 188935691 188935988 -93257676 - AluJo SINE Alu -23 289 1 767 90 231 0 chr1 188936069 188936225 -93257439 + MSTA LTR MaLR 3 194 -234 543 141 54 0 chr1 188936230 188936322 -93257342 + MSTA LTR MaLR 332 428 0 1608 161 67 6 chr1 188936322 188936651 -93257013 + MSTA LTR MaLR 80 428 0 710 228 78 6 chr1 188936690 188936857 -93256807 + MIR SINE MIR 7 185 -77 190 340 85 0 chr1 188936884 188936990 -93256674 + L2 LINE L2 3156 3270 -2 348 160 107 13 chr1 188937039 188937114 -93256550 - L2 LINE L2 -5 3308 3227 295 212 12 35 chr1 188939058 188939143 -93254521 + GA-rich Low_complexity Low_complexity 1 83 0 216 182 39 26 chr1 188939497 188939574 -93254090 + (CCG)n Simple_repeat Simple_repeat 1 78 0 26 0 0 0 chr1 188939593 188939619 -93254045 + GC_rich Low_complexity Low_complexity 1 26 0 327 292 91 70 chr1 188939655 188939898 -93253766 - L1M2 LINE L1 -5739 1110 863 1779 143 7 7 chr1 188941272 188941552 -93252112 + AluJb SINE Alu 1 280 -32 216 97 0 0 chr1 188941552 188941583 -93252081 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2116 105 11 3 chr1 188942004 188942172 -93251492 - AluSx SINE Alu -16 296 124 180 0 0 0 chr1 188942172 188942192 -93251472 + (TA)n Simple_repeat Simple_repeat 1 20 0 2116 105 11 3 chr1 188942192 188942309 -93251355 - AluSx SINE Alu -188 124 9 300 50 0 0 chr1 188942619 188942659 -93251005 - Alu SINE Alu -261 40 1 1836 144 24 14 chr1 188943590 188943882 -93249782 - AluJb SINE Alu -17 295 1 184 287 109 30 chr1 188944497 188944598 -93249066 + L2 LINE L2 3160 3268 -4 195 277 77 0 chr1 188945046 188945111 -93248553 - L2 LINE L2 0 3313 3244 267 290 58 65 chr1 188945123 188945278 -93248386 - MER5B DNA MER1_type -3 175 22 * 274 284 0 27 chr1 188945222 188945296 -93248368 + MER5A DNA MER1_type 115 186 -3 181 366 44 22 chr1 188945684 188945867 -93247797 - L2 LINE L2 -578 2736 2550 245 250 119 119 chr1 188946182 188946594 -93247070 + MLT1K LTR MaLR 177 588 0 21 0 0 0 chr1 188946873 188946894 -93246770 + AT_rich Low_complexity Low_complexity 1 21 0 308 200 133 0 chr1 188947840 188947915 -93245749 - MIR SINE MIR 0 262 178 1251 160 4 44 chr1 188947930 188948155 -93245509 - AluJo SINE Alu -12 300 85 365 281 42 84 chr1 188948155 188948322 -93245342 - MIR SINE MIR -98 164 5 1887 176 16 16 chr1 188948765 188949151 -93244513 - MER58D DNA MER1_type 0 386 1 1121 257 166 8 chr1 188949171 188949556 -93244108 - MLT1H LTR MaLR -103 446 1 593 265 92 77 chr1 188949556 188950036 -93243628 - L1MC/D LINE L1 -743 5403 5320 2485 64 0 0 chr1 188950036 188950333 -93243331 - AluY SINE Alu -14 297 1 593 265 92 77 chr1 188950333 188950758 -93242906 - L1MC/D LINE L1 -826 5320 4903 296 276 132 84 chr1 188950966 188951216 -93242448 - MIR SINE MIR 0 262 1 2203 125 0 16 chr1 188951835 188952140 -93241524 - AluSx SINE Alu -12 300 1 240 326 11 34 chr1 188952231 188952320 -93241344 + L2 LINE L2 3170 3256 -16 850 222 19 0 chr1 188952322 188952484 -93241180 - FAM SINE Alu -9 166 2 351 320 111 45 chr1 188952750 188953206 -93240458 - L2 LINE L2 -110 3162 2682 2263 103 10 0 chr1 188953393 188953685 -93239979 + AluSq SINE Alu 1 295 -18 199 327 148 49 chr1 188953730 188953953 -93239711 + L2 LINE L2 2658 2902 -412 317 347 34 37 chr1 188954100 188954368 -93239296 - L2 LINE L2 -18 3295 3029 693 309 51 17 chr1 188954407 188954753 -93238911 - L2 LINE L2 -236 3036 2684 560 287 240 15 chr1 188954756 188955190 -93238474 + L2 LINE L2 2532 3061 -252 326 290 97 13 chr1 188955325 188955480 -93238184 - L2 LINE L2 -636 2678 2511 23 33 0 0 chr1 188955709 188955739 -93237925 + AT_rich Low_complexity Low_complexity 1 30 0 960 147 31 37 chr1 188955854 188956045 -93237619 + MER20 DNA MER1_type 29 218 -1 375 254 140 66 chr1 188956143 188956286 -93237378 - MARNA DNA Mariner -7 579 448 467 152 13 0 chr1 188956286 188956365 -93237299 - L1PA10 LINE L1 -1 6167 6088 375 254 140 66 chr1 188956365 188956556 -93237108 - MARNA DNA Mariner -138 448 220 225 323 169 4 chr1 188956671 188956778 -93236886 + L1MC/D LINE L1 5454 5542 -2266 2161 124 0 0 chr1 188956778 188957069 -93236595 - AluSc SINE Alu -10 299 9 225 323 169 4 chr1 188957069 188957209 -93236455 + L1MC/D LINE L1 5542 5742 -2066 2336 81 3 16 chr1 188957786 188958096 -93235568 - AluY SINE Alu -5 306 1 2225 120 0 3 chr1 188959786 188960085 -93233579 + AluSx SINE Alu 1 298 -14 221 75 25 0 chr1 188960687 188960727 -93232937 + (GA)n Simple_repeat Simple_repeat 1 41 0 22 35 0 0 chr1 188961360 188961389 -93232275 + AT_rich Low_complexity Low_complexity 1 29 0 1284 224 52 33 chr1 188961945 188962275 -93231389 + MER58B DNA MER1_type 2 337 -4 2092 130 138 5 chr1 188962574 188962952 -93230712 - MSTA LTR MaLR 0 428 1 4876 140 31 13 chr1 188962952 188963778 -93229886 - MSTA-int LTR MaLR 0 1580 740 1606 160 48 14 chr1 188965188 188965481 -93228183 - AluJb SINE Alu -9 303 1 2903 163 42 8 chr1 188966179 188966708 -93226956 + MER44D DNA MER2_type 1 602 -3 205 304 0 27 chr1 188966982 188967094 -93226570 + GA-rich Low_complexity Low_complexity 3 111 0 522 327 42 14 chr1 188967159 188967376 -93226288 + L2 LINE L2 1863 2085 -1229 846 169 0 14 chr1 188967378 188967526 -93226138 - FRAM SINE Alu 0 40 1 23 0 0 0 chr1 188967649 188967672 -93225992 + AT_rich Low_complexity Low_complexity 1 23 0 472 169 45 0 chr1 188967672 188967761 -93225903 - AluJ/FLAM SINE Alu -215 97 5 337 344 156 30 chr1 188967896 188968262 -93225402 + L2 LINE L2 2387 2798 -516 441 218 121 16 chr1 188968484 188968608 -93225056 + L2 LINE L2 3171 3307 -6 32 57 0 0 chr1 188968957 188969010 -93224654 + AT_rich Low_complexity Low_complexity 1 53 0 1151 117 0 0 chr1 188969727 188969881 -93223783 + AluSg/x SINE Alu 137 290 -22 1946 117 64 0 chr1 188970079 188970361 -93223303 + AluSx SINE Alu 1 300 -12 602 132 11 0 chr1 188971338 188971429 -93222235 - MER4E LTR ERV1 0 779 688 2318 166 13 0 chr1 188971544 188971942 -93221722 - MER57A LTR ERV1 0 403 1 2476 55 3 7 chr1 188972291 188972599 -93221065 - AluY SINE Alu -4 307 1 680 257 59 47 chr1 188972957 188973210 -93220454 + MIR SINE MIR 7 262 0 422 209 99 110 chr1 188973377 188973568 -93220096 + MER58C DNA MER1_type 27 215 0 201 321 0 0 chr1 188974401 188974454 -93219210 - MIR3 SINE MIR -27 181 129 345 233 129 17 chr1 188975309 188975425 -93218239 + MIR SINE MIR 124 252 -10 2162 74 42 3 chr1 188975478 188975762 -93217902 + AluYa5 SINE Alu 1 295 -16 311 331 35 28 chr1 188975782 188975924 -93217740 - L3 LINE CR1 -1 1576 1434 217 283 0 17 chr1 188975987 188976047 -93217617 - L2 LINE L2 -219 3053 2995 1036 308 120 32 chr1 188976962 188977654 -93216010 + L1MEd LINE L1 16 768 -5351 429 279 121 29 chr1 188977778 188978358 -93215306 + L1MEd LINE L1 1057 1730 -861 1340 183 12 4 chr1 188978627 188978868 -93214796 + AluJo SINE Alu 66 308 -4 22 0 0 0 chr1 188979194 188979216 -93214448 + AT_rich Low_complexity Low_complexity 1 22 0 404 284 281 12 chr1 188979409 188979729 -93213935 - L2 LINE L2 0 3313 2908 1883 142 0 20 chr1 188980264 188980560 -93213104 + AluJb SINE Alu 1 290 -22 306 277 57 71 chr1 188980675 188980816 -93212848 + L2 LINE L2 3134 3272 0 1512 188 10 16 chr1 188980916 188981220 -93212444 + AluJo SINE Alu 1 302 -10 391 355 60 38 chr1 188981254 188981437 -93212227 + MIR3 SINE MIR 1 187 -21 207 69 0 0 chr1 188982179 188982208 -93211456 + (TG)n Simple_repeat Simple_repeat 2 30 0 8091 168 51 30 chr1 188982596 188984216 -93209448 + L1PB3 LINE L1 3449 5032 -1122 2061 77 13 68 chr1 188984216 188984526 -93209138 + AluY SINE Alu 11 303 -8 8091 168 51 30 chr1 188984526 188985007 -93208657 + L1PB3 LINE L1 5032 5501 -653 2150 92 43 0 chr1 188985007 188985289 -93208375 + AluSx SINE Alu 1 294 -18 8091 168 51 30 chr1 188985289 188985796 -93207868 + L1PB3 LINE L1 5501 6117 -37 21 36 0 0 chr1 188986770 188986798 -93206866 + AT_rich Low_complexity Low_complexity 1 28 0 246 267 113 81 chr1 188987574 188987795 -93205869 - MLT1L LTR MaLR -223 392 165 1704 122 4 28 chr1 188988035 188988315 -93205349 + AluSq SINE Alu 43 316 0 2412 85 3 0 chr1 188989037 188989343 -93204321 + AluSp SINE Alu 1 307 -6 811 194 12 6 chr1 188989967 188990127 -93203537 - MER5A DNA MER1_type -21 168 8 2451 165 18 11 chr1 188990138 188990587 -93203077 + L1PA16 LINE L1 5707 6158 -8 2420 77 0 0 chr1 188990621 188990918 -93202746 - AluSc SINE Alu -12 297 1 2177 116 3 0 chr1 188990923 188991225 -93202439 - AluSx SINE Alu -9 303 1 999 85 0 97 chr1 188992241 188992406 -93201258 - AluSg/x SINE Alu -30 280 132 2114 128 7 0 chr1 188992406 188992712 -93200952 - AluSc SINE Alu -1 308 1 232 208 222 0 chr1 188993436 188993508 -93200156 - MIR SINE MIR -99 163 76 21 0 0 0 chr1 188994016 188994037 -93199627 + AT_rich Low_complexity Low_complexity 1 21 0 246 289 55 78 chr1 188994156 188994284 -93199380 - MIR SINE MIR -65 143 19 419 213 247 13 chr1 188994432 188994582 -93199082 - MIR SINE MIR -30 232 48 1786 156 0 39 chr1 188995347 188995655 -93198009 - AluJb SINE Alu -16 296 1 202 267 81 81 chr1 188996664 188996739 -93196925 - MIR SINE MIR -75 187 110 1048 236 117 17 chr1 188996739 188997091 -93196573 - MLT1B LTR MaLR -3 387 1 254 161 0 32 chr1 188997688 188997750 -93195914 - L1MC4 LINE L1 0 8042 7983 2879 219 119 51 chr1 188997756 188998212 -93195452 - L1MC4 LINE L1 -95 7713 7289 2218 123 0 0 chr1 188998212 188998522 -93195142 - AluSx SINE Alu -2 310 1 2879 219 119 51 chr1 188998522 188998707 -93194957 - L1MC4 LINE L1 -519 7289 7118 1707 169 30 0 chr1 188998707 188998974 -93194690 - AluJo SINE Alu -37 275 1 2879 219 119 51 chr1 188998974 188999609 -93194055 - L1MC4 LINE L1 -690 7118 6454 302 268 61 56 chr1 189000305 189000518 -93193146 + L1MD3 LINE L1 2238 2451 -3975 3151 182 95 28 chr1 189000798 189001649 -93192015 + L1MDa LINE L1 1119 2026 -4514 585 217 9 0 chr1 189001650 189001756 -93191908 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 784 90 192 34 chr1 189001748 189001925 -93191739 + Tigger3(Golem) DNA MER2_type 2279 2483 -546 690 143 0 0 chr1 189001927 189002072 -93191592 - AluSg/x SINE Alu 0 329 185 2012 119 33 10 chr1 189002089 189002391 -93191273 - AluSg SINE Alu -1 309 1 1969 116 41 24 chr1 189002393 189002685 -93190979 - AluSx SINE Alu -15 297 1 2970 121 26 62 chr1 189002709 189003253 -93190411 + Tigger3(Golem) DNA MER2_type 2504 3027 -2 1652 250 24 8 chr1 189003255 189003751 -93189913 + L1MD3 LINE L1 4690 5193 -1233 1605 179 22 149 chr1 189003783 189004090 -93189574 + L1MD3 LINE L1 5310 5654 -985 2176 99 0 7 chr1 189004090 189004374 -93189290 + AluSg1 SINE Alu 19 300 -9 1605 179 22 149 chr1 189004374 189004653 -93189011 + L1MD3 LINE L1 5654 5967 -672 1632 180 11 3 chr1 189004653 189004937 -93188727 + AluJo SINE Alu 4 289 -23 1605 179 22 149 chr1 189004937 189004966 -93188698 + L1MD3 LINE L1 5967 5998 -641 2138 142 80 20 chr1 189004966 189005368 -93188296 + MSTA LTR MaLR 3 428 0 1605 179 22 149 chr1 189005368 189005650 -93188014 + L1MD3 LINE L1 5998 5983 -656 1579 167 31 27 chr1 189005650 189005774 -93187890 + AluJo SINE Alu 2 124 -188 257 0 30 0 chr1 189005774 189005807 -93187857 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1579 167 31 27 chr1 189005807 189005976 -93187688 + AluJo SINE Alu 124 296 -16 1605 179 22 149 chr1 189005976 189006357 -93187307 + L1MD3 LINE L1 5982 6410 -229 275 273 101 14 chr1 189006364 189006503 -93187161 + L1MD2 LINE L1 6475 6625 -14 2155 118 0 3 chr1 189007052 189007348 -93186316 - AluSx SINE Alu -17 295 1 2799 131 69 4 chr1 189007521 189008001 -93185663 - MER9 LTR ERVK 0 511 1 3405 153 19 15 chr1 189008001 189009057 -93184607 - HERVK9 LTR ERVK 0 8032 3538 * 25745 90 3 2 chr1 189009031 189012757 -93180907 - HERVK9 LTR ERVK -730 5186 1463 2723 115 98 8 chr1 189012765 189013234 -93180430 - MER9 LTR ERVK 0 511 1 182 250 141 16 chr1 189013240 189013304 -93180360 + L2 LINE L2 3201 3272 0 1993 139 0 0 chr1 189013844 189014148 -93179516 - AluSx SINE Alu 0 304 1 213 286 130 0 chr1 189014824 189014901 -93178763 + MIR SINE MIR 58 144 -118 2241 85 17 0 chr1 189015765 189016059 -93177605 + AluSq SINE Alu 1 299 -14 341 288 122 0 chr1 189017420 189017559 -93176105 - MIR SINE MIR -72 190 35 437 266 47 31 chr1 189017921 189018049 -93175615 + MIR SINE MIR 9 138 -124 22 35 0 0 chr1 189019808 189019837 -93173827 + AT_rich Low_complexity Low_complexity 1 29 0 665 319 50 8 chr1 189022921 189023159 -93170505 + MIR SINE MIR 13 260 -2 1783 81 4 4 chr1 189024307 189024542 -93169122 - AluSq SINE Alu -4 309 75 202 273 28 98 chr1 189025289 189025432 -93168232 - L2 LINE L2 -9 3304 3172 6442 146 28 21 chr1 189026032 189026902 -93166762 + Tigger2 DNA MER2_type 1 882 -1836 1828 166 10 7 chr1 189026902 189027039 -93166625 + AluJb SINE Alu 1 136 -176 2251 91 17 7 chr1 189027039 189027336 -93166328 + AluSq SINE Alu 1 300 -13 1828 166 10 7 chr1 189027336 189027505 -93166159 + AluJb SINE Alu 136 308 -4 6442 146 28 21 chr1 189027505 189027775 -93165889 + Tigger2 DNA MER2_type 882 1149 -1569 1453 71 5 19 chr1 189027878 189028090 -93165574 + Tigger2 DNA MER2_type 1136 1344 -1374 3384 111 94 5 chr1 189028093 189028644 -93165020 + Tigger2 DNA MER2_type 2119 2718 0 1221 160 38 4 chr1 189028867 189029104 -93164560 - L1MB4 LINE L1 -314 5866 5622 1165 201 128 77 chr1 189029104 189029533 -93164131 - MLT1D LTR MaLR -51 454 4 216 353 54 42 chr1 189029725 189029892 -93163772 - L3 LINE CR1 -68 1509 1341 572 236 53 96 chr1 189030033 189030241 -93163423 - MIR SINE MIR -1 261 63 2138 119 3 3 chr1 189030242 189030535 -93163129 - AluSp SINE Alu -20 293 1 2011 145 16 0 chr1 189030575 189030879 -93162785 - AluSx SINE Alu 0 312 4 202 315 84 28 chr1 189031085 189031228 -93162436 - L2 LINE L2 -211 3061 2911 206 293 13 40 chr1 189031230 189031305 -93162359 - L3 LINE CR1 -367 1210 1138 22 0 0 0 chr1 189031398 189031420 -93162244 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr1 189031433 189031474 -93162190 + AT_rich Low_complexity Low_complexity 1 41 0 205 258 102 62 chr1 189031507 189031635 -93162029 - L3 LINE CR1 -603 974 842 4355 129 107 5 chr1 189031644 189032394 -93161270 - LTR1B LTR ERV1 0 826 1 30 27 0 0 chr1 189032935 189032972 -93160692 + AT_rich Low_complexity Low_complexity 1 37 0 477 0 0 0 chr1 189033788 189033841 -93159823 + (T)n Simple_repeat Simple_repeat 1 53 0 230 0 0 32 chr1 189034225 189034256 -93159408 + (TTAAA)n Simple_repeat Simple_repeat 1 30 0 855 153 0 8 chr1 189034256 189034387 -93159277 - MER3 DNA MER1_type -78 131 2 694 254 134 22 chr1 189034657 189034889 -93158775 + MIR SINE MIR 5 262 0 2082 88 55 7 chr1 189035029 189035337 -93158327 + L1PA8A LINE L1 5804 6126 -5 1734 135 0 50 chr1 189036045 189036326 -93157338 + AluJo SINE Alu 12 278 -34 1922 166 3 20 chr1 189036605 189036948 -93156716 - MER1B DNA MER1_type 0 337 1 3634 156 25 37 chr1 189037675 189038206 -93155458 - L1MB5 LINE L1 0 6174 5653 1388 142 201 0 chr1 189038206 189038495 -93155169 - MER7A DNA MER2_type -1 345 1 3634 156 25 37 chr1 189038495 189038692 -93154972 - L1MB5 LINE L1 -521 5653 5455 230 267 69 59 chr1 189039301 189039402 -93154262 + L2 LINE L2 2955 3056 -216 651 235 83 10 chr1 189039549 189039753 -93153911 + L2 LINE L2 3095 3313 0 212 298 202 0 chr1 189039766 189039860 -93153804 + L2 LINE L2 3152 3264 -8 970 94 0 0 chr1 189040729 189040856 -93152808 + AluSg/x SINE Alu 183 309 -3 2372 75 3 0 chr1 189040872 189041164 -93152500 + AluSp SINE Alu 1 293 -20 2086 128 0 7 chr1 189041226 189041524 -93152140 + AluSq SINE Alu 1 296 -17 1243 117 0 6 chr1 189041524 189041703 -93151961 + AluSq SINE Alu 134 311 -2 404 236 16 31 chr1 189042831 189042958 -93150706 - L1ME1 LINE L1 -211 5955 5831 1459 243 108 66 chr1 189044027 189044439 -93149225 - L1ME3 LINE L1 -90 6031 5638 2164 106 7 0 chr1 189044439 189044732 -93148932 - AluSx SINE Alu -2 310 16 1459 243 108 66 chr1 189044732 189045788 -93147876 - L1ME3 LINE L1 -483 5638 4537 505 208 59 0 chr1 189045849 189045950 -93147714 - FLAM_C SINE Alu -36 107 1 1331 115 18 174 chr1 189046115 189046455 -93147209 - AluJb SINE Alu -25 287 1 333 233 84 99 chr1 189046472 189046700 -93146964 - L1ME3 LINE L1 -1835 4311 4092 2358 201 126 14 chr1 189046700 189047360 -93146304 - MER50 LTR ERV1 0 734 1 333 233 84 99 chr1 189047360 189047484 -93146180 - L1ME3 LINE L1 -2054 4092 3968 216 149 0 0 chr1 189047495 189047542 -93146122 + (C)n Simple_repeat Simple_repeat 1 47 0 1622 189 11 3 chr1 189047544 189047830 -93145834 - AluJb SINE Alu -22 290 3 237 289 26 9 chr1 189047841 189047955 -93145709 - L1ME3 LINE L1 -2187 3959 3844 2352 103 0 0 chr1 189047955 189048255 -93145409 - AluSc SINE Alu -9 300 1 1074 65 0 0 chr1 189048271 189048410 -93145254 - AluSp/q SINE Alu -2 311 173 895 281 54 43 chr1 189048432 189048874 -93144790 - L1ME3 LINE L1 -2374 3772 3319 701 196 8 8 chr1 189048874 189049007 -93144657 - FLAM_C SINE Alu 0 133 1 895 281 54 43 chr1 189049007 189049234 -93144430 - L1ME3 LINE L1 -2827 3319 3096 7591 171 54 25 chr1 189049359 189051088 -93142576 - L1PA16 LINE L1 -14 6152 4333 216 0 0 0 chr1 189051088 189051112 -93142552 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7591 171 54 25 chr1 189051112 189052028 -93141636 - L1PA16 LINE L1 -1833 4333 3445 434 168 53 11 chr1 189052529 189052624 -93141040 + MER88 LTR ERVL 80 178 -286 * 534 231 25 38 chr1 189052540 189052700 -93140964 - MER74B LTR ERVL -74 548 391 536 184 10 10 chr1 189052717 189052820 -93140844 - FRAM SINE Alu -64 112 10 1321 221 97 21 chr1 189052829 189053169 -93140495 - MER74B LTR ERVL -191 431 66 2637 3 3 0 chr1 189054414 189054699 -93138965 + AluYa5 SINE Alu 13 298 -13 1777 162 36 7 chr1 189054719 189055022 -93138642 - AluJb SINE Alu 0 312 1 21 0 0 0 chr1 189055373 189055394 -93138270 + AT_rich Low_complexity Low_complexity 1 21 0 214 245 0 19 chr1 189056473 189056526 -93137138 + (ATGGTG)n Simple_repeat Simple_repeat 2 53 0 31 68 0 0 chr1 189056850 189056909 -93136755 + AT_rich Low_complexity Low_complexity 1 59 0 359 333 71 8 chr1 189057446 189057572 -93136092 + L2 LINE L2 3134 3267 -5 363 217 28 70 chr1 189057749 189057892 -93135772 - L1MC4 LINE L1 -4 8038 7902 534 248 50 0 chr1 189057948 189058069 -93135595 - FLAM_A SINE Alu -6 127 1 2170 218 112 12 chr1 189058081 189058686 -93134978 - L1MC4 LINE L1 -142 7900 7235 262 347 144 0 chr1 189059039 189059261 -93134403 + L2 LINE L2 2388 2641 -673 1701 186 76 5 chr1 189059261 189059680 -93133984 - L1MC4 LINE L1 -443 7599 7151 614 254 32 37 chr1 189060753 189060942 -93132722 + MIR3 SINE MIR 20 207 -1 741 237 103 0 chr1 189062633 189062827 -93130837 + MIR SINE MIR 49 262 0 225 39 0 0 chr1 189062829 189062855 -93130809 - U2 snRNA snRNA -156 32 7 231 36 0 0 chr1 189063083 189063111 -93130553 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 207 191 32 16 chr1 189063189 189063252 -93130412 + (TA)n Simple_repeat Simple_repeat 2 65 0 2043 62 0 0 chr1 189064940 189065183 -93128481 + AluY SINE Alu 2 244 -67 21 36 0 0 chr1 189066414 189066442 -93127222 + AT_rich Low_complexity Low_complexity 1 28 0 184 171 0 98 chr1 189067028 189067069 -93126595 - L2 LINE L2 -102 3170 3134 195 332 37 75 chr1 189067180 189067367 -93126297 - L2 LINE L2 -285 2987 2808 2292 86 0 10 chr1 189067458 189067761 -93125903 + AluY SINE Alu 1 300 -11 1376 102 13 13 chr1 189067815 189068374 -93125290 - L1PA15 LINE L1 -4 6161 5482 1337 82 0 36 chr1 189068375 189068556 -93125108 - AluSp SINE Alu -5 308 133 2256 112 3 0 chr1 189068556 189068859 -93124805 - AluSq SINE Alu -9 304 1 1337 82 0 36 chr1 189068859 189068872 -93124792 - AluSp SINE Alu -180 133 121 877 137 0 0 chr1 189068953 189069077 -93124587 - AluSp SINE Alu -60 253 130 1607 181 7 36 chr1 189069080 189069384 -93124280 - AluJo SINE Alu -15 297 3 190 243 0 0 chr1 189070146 189070183 -93123481 + MIR SINE MIR 86 122 -86 832 271 52 12 chr1 189070264 189070515 -93123149 + MIR SINE MIR 2 262 0 2222 102 0 3 chr1 189071232 189071536 -93122128 - AluY SINE Alu -8 303 1 2295 116 3 0 chr1 189071752 189072063 -93121601 - AluSx SINE Alu 0 312 1 600 314 160 32 chr1 189072204 189072804 -93120860 - L2 LINE L2 0 3313 2629 31 26 0 0 chr1 189074166 189074204 -93119460 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr1 189074553 189074576 -93119088 + AT_rich Low_complexity Low_complexity 1 23 0 513 289 27 7 chr1 189074585 189074734 -93118930 + MIR3 SINE MIR 45 196 -12 4422 207 85 39 chr1 189074777 189076364 -93117300 + L1ME1 LINE L1 3921 5629 -537 1792 134 36 11 chr1 189076364 189076639 -93117025 - AluJb SINE Alu -30 282 1 4422 207 85 39 chr1 189076639 189077089 -93116575 + L1ME1 LINE L1 5629 6057 -109 228 296 66 20 chr1 189078308 189078460 -93115204 + L1ME LINE L1 5311 5469 -2339 240 268 89 47 chr1 189078525 189078715 -93114949 + L1ME LINE L1 5583 5780 -341 196 27 54 27 chr1 189079053 189079090 -93114574 + (TTTTTA)n Simple_repeat Simple_repeat 2 39 0 191 217 0 65 chr1 189079315 189079361 -93114303 - L2 LINE L2 -48 3224 3182 1773 138 63 33 chr1 189079966 189080300 -93113364 - MER2 DNA MER2_type 0 344 1 1750 141 9 44 chr1 189080660 189080979 -93112685 + AluJb SINE Alu 5 312 0 927 113 0 0 chr1 189081269 189081393 -93112271 - FLAM_C SINE Alu -19 124 1 1896 141 40 3 chr1 189081713 189082012 -93111652 - AluJb SINE Alu -2 310 1 2267 86 0 16 chr1 189082221 189082535 -93111129 + AluSx SINE Alu 1 309 -3 189 74 0 0 chr1 189083640 189083667 -93109997 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1092 170 21 5 chr1 189083669 189083863 -93109801 - AluJo SINE Alu -30 282 86 282 242 0 30 chr1 189084067 189084133 -93109531 + L2 LINE L2 3204 3267 -5 2081 118 0 7 chr1 189084138 189084474 -93109190 - AluSx SINE Alu 0 334 1 799 155 59 37 chr1 189084661 189084848 -93108816 + MER3 DNA MER1_type 1 191 -18 214 293 46 32 chr1 189085154 189085282 -93108382 + MIR SINE MIR 10 140 -68 1799 154 16 29 chr1 189085746 189086057 -93107607 - AluJb SINE Alu -3 309 3 207 0 0 0 chr1 189086840 189086863 -93106801 + (CA)n Simple_repeat Simple_repeat 2 24 0 190 359 11 11 chr1 189087079 189087171 -93106493 - MIR3 SINE MIR 0 208 117 200 243 100 29 chr1 189087197 189087267 -93106397 - MER5A DNA MER1_type -71 118 44 2057 121 4 0 chr1 189087717 189087998 -93105666 - AluSx SINE Alu -30 282 1 305 253 141 0 chr1 189088883 189088982 -93104682 + MIR SINE MIR 30 142 -66 233 200 0 0 chr1 189089679 189089724 -93103940 + CT-rich Low_complexity Low_complexity 2 46 0 2013 139 20 3 chr1 189089817 189090120 -93103544 - AluSx SINE Alu -2 310 3 2344 77 0 37 chr1 189090124 189090449 -93103215 - AluSq SINE Alu 0 313 1 22 35 0 0 chr1 189091209 189091238 -93102426 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 189091412 189091434 -93102230 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 189093319 189093349 -93100315 + AT_rich Low_complexity Low_complexity 1 30 0 685 125 54 0 chr1 189093459 189093571 -93100093 + MLT1E LTR MaLR 442 559 -34 695 233 182 24 chr1 189093900 189094230 -93099434 - HAL1 LINE L1 -723 1784 1403 1284 243 91 33 chr1 189095360 189095549 -93098115 + L1MB7 LINE L1 2397 2574 -3572 1699 185 3 32 chr1 189095549 189095857 -93097807 + AluJb SINE Alu 1 299 -13 1284 243 91 33 chr1 189095857 189096153 -93097511 + L1MB7 LINE L1 2574 2910 -3236 * 2782 252 39 33 chr1 189096139 189097105 -93096559 + L1MB7 LINE L1 3608 4579 -1567 54 0 0 0 chr1 189097153 189097207 -93096457 + AT_rich Low_complexity Low_complexity 1 54 0 1720 157 55 0 chr1 189097207 189097481 -93096183 - AluJb SINE Alu -21 291 3 3437 210 77 20 chr1 189097485 189098973 -93094691 + L1MB7 LINE L1 4565 6141 -43 1624 220 72 25 chr1 189098969 189099414 -93094250 - L1M4 LINE L1 -757 5389 4924 * 215 327 47 19 chr1 189099522 189099629 -93094035 - MIR SINE MIR -91 171 62 180 373 105 24 chr1 189099846 189100055 -93093609 - L2 LINE L2 -2782 532 307 210 37 0 0 chr1 189100663 189100690 -93092974 + (TTA)n Simple_repeat Simple_repeat 1 27 0 2048 133 0 0 chr1 189100690 189100969 -93092695 - AluSx SINE Alu -33 279 1 315 178 96 0 chr1 189100972 189101045 -93092619 + Charlie5 DNA MER1_type 2545 2624 0 2458 80 0 0 chr1 189101191 189101491 -93092173 - AluSc SINE Alu -9 300 1 300 27 0 0 chr1 189103306 189103343 -93090321 + (TG)n Simple_repeat Simple_repeat 1 37 0 875 163 0 0 chr1 189104024 189104159 -93089505 + FAM SINE Alu 1 40 -9 610 141 50 9 chr1 189105043 189105238 -93088426 - MER1B DNA MER1_type 0 339 66 246 125 0 0 chr1 189106241 189106289 -93087375 + (A)n Simple_repeat Simple_repeat 1 48 0 23 68 0 0 chr1 189109061 189109105 -93084559 + AT_rich Low_complexity Low_complexity 1 44 0 2095 108 31 0 chr1 189110322 189110610 -93083054 - AluSx SINE Alu -11 301 5 213 39 0 0 chr1 189115194 189115220 -93078444 + (TTA)n Simple_repeat Simple_repeat 2 27 0 252 0 0 0 chr1 189115380 189115408 -93078256 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr1 189117405 189117428 -93076236 + AT_rich Low_complexity Low_complexity 1 23 0 248 197 99 0 chr1 189119103 189119174 -93074490 + HsTC2 DNA Tc2 1 78 -1820 30 0 0 0 chr1 189119517 189119547 -93074117 + AT_rich Low_complexity Low_complexity 1 30 0 1564 163 80 4 chr1 189119547 189119811 -93073853 - AluJb SINE Alu -26 286 3 318 229 271 0 chr1 189123625 189123721 -93069943 + MIR SINE MIR 70 191 -71 376 244 17 33 chr1 189125126 189125306 -93068358 + CT-rich Low_complexity Low_complexity 2 178 0 306 249 17 44 chr1 189125645 189125826 -93067838 + CT-rich Low_complexity Low_complexity 3 178 0 2336 139 12 19 chr1 189126604 189127015 -93066649 + L1MA7 LINE L1 3748 4155 -1991 1041 178 5 0 chr1 189127011 189127208 -93066456 + L1MA7 LINE L1 4864 5061 -1085 * 2359 139 5 0 chr1 189127201 189127589 -93066075 + L1MA7 LINE L1 5336 5725 -566 2270 114 3 9 chr1 189127650 189127965 -93065699 + AluSp SINE Alu 1 313 0 2790 186 9 10 chr1 189127967 189128542 -93065122 + L1MA7 LINE L1 5717 6290 -1 297 0 0 0 chr1 189128551 189128584 -93065080 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 513 255 98 11 chr1 189128756 189128940 -93064724 + MER115 DNA AcHobo 229 428 -265 457 285 85 50 chr1 189129603 189129803 -93063861 - MIR SINE MIR -18 244 38 190 139 47 47 chr1 189130519 189130562 -93063102 - L3 LINE CR1 -7 1570 1528 2127 114 0 10 chr1 189132359 189132658 -93061006 + AluSx SINE Alu 1 296 -16 236 284 74 21 chr1 189132922 189133017 -93060647 + MIR SINE MIR 67 166 -96 192 292 53 44 chr1 189133717 189133830 -93059834 + L2 LINE L2 3183 3296 -17 272 91 23 0 chr1 189134243 189134287 -93059377 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 204 267 0 0 chr1 189134485 189134530 -93059134 - L2 LINE L2 -8 3305 3261 696 204 56 31 chr1 189134539 189134701 -93058963 + MIR SINE MIR 26 191 -71 193 161 0 0 chr1 189134734 189134765 -93058899 - L2 LINE L2 -92 3221 3191 271 267 0 0 chr1 189135116 189135176 -93058488 - MER5B DNA MER1_type -67 111 52 475 222 0 0 chr1 189135364 189135454 -93058210 + MIR SINE MIR 100 189 -73 2293 108 3 0 chr1 189135461 189135756 -93057908 - AluSx SINE Alu -16 296 1 437 233 63 16 chr1 189136510 189136652 -93057012 - MIR SINE MIR -63 145 10 314 315 69 41 chr1 189136874 189137086 -93056578 + MIR SINE MIR 15 237 -25 214 295 134 9 chr1 189137172 189137241 -93056423 + MIR SINE MIR 121 180 -82 2411 82 0 7 chr1 189137241 189137545 -93056119 + AluY SINE Alu 1 302 -9 214 295 134 9 chr1 189137545 189137587 -93056077 + MIR SINE MIR 180 246 -16 284 314 0 58 chr1 189137665 189137786 -93055878 - MIR SINE MIR -51 211 98 382 257 289 14 chr1 189137858 189138076 -93055588 - L3 LINE CR1 -41 1536 1259 453 198 165 8 chr1 189138749 189138870 -93054794 - MIR SINE MIR -121 141 2 1544 123 0 5 chr1 189139190 189139410 -93054254 + AluSg/x SINE Alu 82 300 -10 219 69 0 0 chr1 189139668 189139697 -93053967 + (T)n Simple_repeat Simple_repeat 1 29 0 2239 125 0 0 chr1 189139878 189140173 -93053491 + AluSx SINE Alu 1 295 -17 306 240 58 0 chr1 189140312 189140416 -93053248 - L1ME LINE L1 -340 5781 5672 1920 151 7 0 chr1 189140451 189140743 -93052921 + AluJo SINE Alu 1 294 -18 466 320 10 56 chr1 189140746 189140875 -93052789 + L1MC4 LINE L1 5265 5383 -2425 2149 128 10 0 chr1 189140875 189141179 -93052485 + AluSc SINE Alu 3 309 0 466 320 10 56 chr1 189141179 189141246 -93052418 + L1MC4 LINE L1 5383 5452 -2356 428 287 128 17 chr1 189141266 189141500 -93052164 - L2 LINE L2 -321 2992 2736 1481 107 7 79 chr1 189141884 189142061 -93051603 + MLT1B LTR MaLR 1 152 -238 1904 100 40 37 chr1 189142061 189142177 -93051487 + AluSx SINE Alu 1 115 -197 2195 105 0 7 chr1 189142177 189142485 -93051179 + AluSq SINE Alu 1 306 0 1904 100 40 37 chr1 189142485 189142666 -93050998 + AluSx SINE Alu 115 300 -12 1481 107 7 79 chr1 189142666 189142768 -93050896 + MLT1B LTR MaLR 152 260 -130 217 297 0 0 chr1 189143123 189143187 -93050477 + (CATA)n Simple_repeat Simple_repeat 4 67 0 318 310 11 0 chr1 189143187 189143274 -93050390 + L1MC4 LINE L1 6614 6701 -1341 561 259 53 16 chr1 189143435 189143639 -93050025 - MIR SINE MIR -56 206 3 342 254 102 140 chr1 189143782 189143921 -93049743 + L1ME4a LINE L1 5732 5875 -246 1676 152 46 33 chr1 189143921 189144224 -93049440 + AluJo SINE Alu 1 307 -5 342 254 102 140 chr1 189144224 189144303 -93049361 + L1ME4a LINE L1 5875 5955 -166 704 84 106 28 chr1 189144303 189144445 -93049219 + L1MB4 LINE L1 6028 6180 0 342 254 102 140 chr1 189144445 189144619 -93049045 + L1ME4a LINE L1 5955 6110 -11 186 333 37 0 chr1 189146885 189146966 -93046698 + MER5A DNA MER1_type 87 170 -19 241 306 135 9 chr1 189148380 189148491 -93045173 + MIR3 SINE MIR 62 186 -22 333 288 25 0 chr1 189148886 189148966 -93044698 + L2 LINE L2 2977 3058 -214 619 121 10 0 chr1 189148998 189149121 -93044543 - AluSg/x SINE Alu 0 336 213 2121 92 0 54 chr1 189149180 189149494 -93044170 + AluSx SINE Alu 5 301 -11 2304 106 13 3 chr1 189149900 189150201 -93043463 - AluSx SINE Alu -8 304 1 263 396 79 0 chr1 189150394 189150533 -93043131 + L2 LINE L2 3123 3272 0 2290 122 0 3 chr1 189150666 189150978 -93042686 + AluJb SINE Alu 1 311 -1 1626 58 27 22 chr1 189151137 189151362 -93042302 - L1PA6 LINE L1 0 6154 5929 453 170 72 46 chr1 189151956 189152109 -93041555 + L1ME4a LINE L1 5963 6119 -2 2215 84 42 0 chr1 189152114 189152399 -93041265 + AluSg SINE Alu 1 297 -13 236 91 23 0 chr1 189155447 189155491 -93038173 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 205 307 33 27 chr1 189155530 189155680 -93037984 + CT-rich Low_complexity Low_complexity 4 154 0 2325 82 9 19 chr1 189155862 189156177 -93037487 - AluSx SINE Alu 0 312 1 254 293 0 24 chr1 189157138 189157220 -93036444 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 2638 46 3 0 chr1 189157378 189157684 -93035980 - AluY SINE Alu -4 307 1 1601 110 0 9 chr1 189159575 189159794 -93033870 - AluSx SINE Alu -58 254 38 797 239 126 57 chr1 189160633 189160782 -93032882 + L2 LINE L2 2040 2177 -1137 2189 113 0 3 chr1 189160782 189161095 -93032569 - AluSx SINE Alu 0 312 1 797 239 126 57 chr1 189161095 189161278 -93032386 + L2 LINE L2 2177 2396 -918 262 188 24 112 chr1 189161353 189161523 -93032141 - L1ME4a LINE L1 -4 6117 5963 337 264 35 35 chr1 189161623 189161742 -93031922 - L1ME4a LINE L1 -335 5786 5665 2324 123 0 0 chr1 189161742 189162051 -93031613 - AluY SINE Alu -1 310 2 337 264 35 35 chr1 189162051 189162075 -93031589 - L1ME4a LINE L1 -455 5666 5643 231 312 51 77 chr1 189162188 189162422 -93031242 - L1ME4a LINE L1 -515 5606 5379 908 200 0 11 chr1 189162472 189162657 -93031007 - FRAM SINE Alu -1 175 1 2331 119 0 3 chr1 189162705 189163015 -93030649 - AluSx SINE Alu -3 309 1 342 0 0 0 chr1 189163974 189164012 -93029652 + (CA)n Simple_repeat Simple_repeat 2 39 0 239 181 114 114 chr1 189164370 189164549 -93029115 - MIR3 SINE MIR -68 194 10 435 279 53 26 chr1 189165408 189165634 -93028030 + L1MC4 LINE L1 6798 7029 -1013 2243 70 13 0 chr1 189165638 189165936 -93027728 - AluSx SINE Alu -9 303 2 261 152 22 0 chr1 189166000 189166046 -93027618 + L1MC5 LINE L1 6968 7014 -947 702 237 32 5 chr1 189166073 189166263 -93027401 - L1MC5 LINE L1 -35 7926 7732 1657 184 146 68 chr1 189166274 189166937 -93026727 + L1MC5 LINE L1 7025 7739 -222 270 232 74 11 chr1 189167279 189167374 -93026290 + MIR SINE MIR 101 201 -61 1602 126 100 4 chr1 189167427 189167688 -93025976 + AluJo SINE Alu 1 286 -26 603 272 13 0 chr1 189167698 189167856 -93025808 - MIR SINE MIR 0 262 103 1740 144 3 48 chr1 189168402 189168715 -93024949 - AluJo SINE Alu -13 299 1 514 266 149 74 chr1 189169049 189169452 -93024212 + L3 LINE CR1 960 1392 -185 553 270 21 13 chr1 189169469 189169660 -93024004 + MIR SINE MIR 14 251 -11 352 237 122 0 chr1 189169746 189169902 -93023762 + L1ME4a LINE L1 5944 6118 -3 229 215 149 41 chr1 189170086 189170207 -93023457 + L1ME4a LINE L1 5971 6104 -17 21 0 0 0 chr1 189171615 189171636 -93022028 + AT_rich Low_complexity Low_complexity 1 21 0 1757 179 0 0 chr1 189171892 189172193 -93021471 + AluJb SINE Alu 1 301 -11 2271 100 3 0 chr1 189173883 189174192 -93019472 - AluSp SINE Alu -1 312 3 545 247 114 0 chr1 189174392 189174558 -93019106 - MIR SINE MIR -13 249 65 2338 75 3 0 chr1 189175382 189175690 -93017974 + AluSx SINE Alu 1 309 -3 271 185 62 49 chr1 189176175 189176256 -93017408 + L2 LINE L2 3232 3313 0 185 333 28 9 chr1 189177101 189177209 -93016455 - MIR SINE MIR -55 153 44 201 279 0 0 chr1 189177624 189177667 -93015997 - MER91A DNA MER1_type -2 188 146 2147 109 0 7 chr1 189177681 189177983 -93015681 + AluSx SINE Alu 5 304 -8 2098 125 0 6 chr1 189177984 189178295 -93015369 + AluSg1 SINE Alu 1 309 0 300 302 72 0 chr1 189178328 189178467 -93015197 - MER91A DNA MER1_type -47 149 1 329 260 99 75 chr1 189178567 189178623 -93015041 + MIR SINE MIR 19 72 -190 1458 178 3 36 chr1 189178623 189178926 -93014738 - AluJo SINE Alu -19 293 1 329 260 99 75 chr1 189178926 189179061 -93014603 + MIR SINE MIR 72 211 -51 2586 169 41 2 chr1 189179151 189179614 -93014050 - MER31A LTR ERV1 0 485 5 263 210 0 16 chr1 189181153 189181215 -93012449 + CT-rich Low_complexity Low_complexity 2 62 0 2298 64 0 3 chr1 189181230 189181527 -93012137 + AluSg SINE Alu 1 296 -14 1532 133 60 80 chr1 189181538 189181869 -93011795 + AluSx SINE Alu 1 312 0 4378 146 9 20 chr1 189182003 189182174 -93011490 + L1MB3 LINE L1 5442 5613 -570 2310 71 7 0 chr1 189182174 189182469 -93011195 + AluSp SINE Alu 1 297 -16 4378 146 9 20 chr1 189182469 189183045 -93010619 + L1MB3 LINE L1 5613 6181 -2 2219 115 0 0 chr1 189183918 189184230 -93009434 - AluSx SINE Alu 0 312 1 945 221 20 5 chr1 189184351 189184555 -93009109 - MIR SINE MIR -19 243 37 567 215 34 27 chr1 189184552 189184701 -93008963 - MIR3 SINE MIR -26 182 33 * 386 237 44 69 chr1 189185277 189185437 -93008227 + MIR SINE MIR 30 192 -62 256 333 37 0 chr1 189185704 189185812 -93007852 - MIR3 SINE MIR -2 206 95 751 276 29 21 chr1 189186015 189186258 -93007406 + MIR SINE MIR 6 250 -12 255 277 139 10 chr1 189186279 189186380 -93007284 + L2 LINE L2 3154 3267 -5 892 266 132 47 chr1 189186395 189187024 -93006640 + L2 LINE L2 2640 3313 0 183 100 0 0 chr1 189187097 189187127 -93006537 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 294 307 39 24 chr1 189187127 189187254 -93006410 + L3 LINE CR1 1432 1560 -17 488 290 59 23 chr1 189187846 189188092 -93005572 + L1MC4a LINE L1 5617 5783 -338 292 229 110 42 chr1 189188117 189188235 -93005429 + L1ME4a LINE L1 5970 6095 -26 645 310 65 22 chr1 189189434 189189666 -93003998 - MIR SINE MIR -1 261 20 1263 121 31 54 chr1 189190002 189190226 -93003438 + MER20 DNA MER1_type 1 219 0 352 351 69 15 chr1 189190625 189190756 -93002908 + MIR3 SINE MIR 9 146 -62 23 33 0 0 chr1 189191303 189191333 -93002331 + AT_rich Low_complexity Low_complexity 1 30 0 2259 61 16 22 chr1 189191935 189192246 -93001418 - AluSp SINE Alu -4 309 1 758 245 89 38 chr1 189193357 189193453 -93000211 - LTR16C LTR ERVL 0 491 401 2840 112 46 18 chr1 189193453 189193907 -92999757 + MLT1C LTR MaLR 1 467 0 758 245 89 38 chr1 189193907 189194047 -92999617 - LTR16C LTR ERVL -90 401 243 229 267 267 30 chr1 189195000 189195165 -92998499 + MIR SINE MIR 40 243 -19 979 101 0 0 chr1 189196012 189196151 -92997513 - FRAM SINE Alu -6 170 32 180 0 0 0 chr1 189196350 189196370 -92997294 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 299 276 99 73 chr1 189196853 189197045 -92996619 + MIR3 SINE MIR 5 201 -7 770 56 24 24 chr1 189197103 189197229 -92996435 + (TTTTC)n Simple_repeat Simple_repeat 5 130 0 195 42 0 0 chr1 189197229 189197253 -92996411 + (TCCCC)n Simple_repeat Simple_repeat 5 28 0 880 183 0 122 chr1 189197262 189197475 -92996189 - AluJb SINE Alu -39 273 87 1961 120 0 68 chr1 189197780 189198106 -92995558 - AluSx SINE Alu -8 304 1 1556 192 0 7 chr1 189198445 189198736 -92994928 + AluJo SINE Alu 7 295 -17 2302 79 9 16 chr1 189199972 189200287 -92993377 + AluSp SINE Alu 1 313 0 222 360 12 6 chr1 189201053 189201217 -92992447 + (CA)n Simple_repeat Simple_repeat 2 166 0 224 301 24 89 chr1 189202707 189202830 -92990834 + MIR SINE MIR 92 206 -56 270 226 43 75 chr1 189203380 189203473 -92990191 - MIR3 SINE MIR -53 155 66 204 133 0 0 chr1 189203532 189203562 -92990102 - MIR SINE MIR -119 143 114 470 298 144 45 chr1 189203881 189204171 -92989493 + L1MC4a LINE L1 5606 5928 -238 23 0 0 0 chr1 189204294 189204317 -92989347 + AT_rich Low_complexity Low_complexity 1 23 0 365 206 0 0 chr1 189204661 189204734 -92988930 - MER116 DNA Mariner -4 76 4 1846 98 0 8 chr1 189205013 189205293 -92988371 - AluSx SINE Alu 0 311 34 295 277 25 92 chr1 189205293 189205406 -92988258 - L2 LINE L2 -10 3303 3199 620 263 132 5 chr1 189206771 189206961 -92986703 - MIR SINE MIR -13 249 36 497 247 53 68 chr1 189209774 189209964 -92983700 + MIR3 SINE MIR 1 187 -21 230 261 46 0 chr1 189210000 189210065 -92983599 + Charlie8 DNA MER1_type 58 125 -2292 263 248 109 38 chr1 189210129 189210339 -92983325 + L1ME2 LINE L1 4458 4682 -1464 414 204 11 0 chr1 189210343 189210436 -92983228 + L1MB7 LINE L1 5104 5197 -949 291 271 25 76 chr1 189210513 189210631 -92983033 - MIR SINE MIR -136 126 15 185 0 40 0 chr1 189211737 189211762 -92981902 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 5111 154 24 3 chr1 189212829 189213804 -92979860 + L1MB7 LINE L1 5174 6166 -18 3048 191 53 9 chr1 189213936 189214741 -92978923 + L1ME2 LINE L1 4828 5700 -464 186 103 0 0 chr1 189214741 189214770 -92978894 + (TA)n Simple_repeat Simple_repeat 2 30 0 3048 191 53 9 chr1 189214770 189215059 -92978605 + L1ME2 LINE L1 5700 5975 -189 439 288 36 29 chr1 189215131 189215270 -92978394 - L2 LINE L2 -2 3311 3172 287 217 84 35 chr1 189215273 189215416 -92978248 + L1MC/D LINE L1 5314 5463 -2345 602 231 41 0 chr1 189215423 189215570 -92978094 + L2 LINE L2 1552 1704 -1610 625 281 119 14 chr1 189215602 189215897 -92977767 + MLT1H LTR MaLR 209 534 -15 259 303 0 13 chr1 189215928 189216004 -92977660 - MLT1K LTR MaLR -327 261 187 297 159 0 0 chr1 189216326 189216389 -92977275 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 712 316 118 16 chr1 189216831 189217211 -92976453 + MLT1K LTR MaLR 13 431 -157 318 50 0 0 chr1 189218124 189218164 -92975500 + (GA)n Simple_repeat Simple_repeat 1 40 0 282 330 48 0 chr1 189218244 189218347 -92975317 + L2 LINE L2 3163 3270 -2 181 139 0 56 chr1 189218324 189218360 -92975304 - L2 LINE L2 -2682 632 599 * 2003 139 0 22 chr1 189218665 189218982 -92974682 - AluJb SINE Alu -1 311 2 484 206 20 20 chr1 189219159 189219276 -92974388 - MER63 DNA MER1_type -1 1059 719 515 311 66 6 chr1 189219410 189219577 -92974087 - MIR3 SINE MIR 0 208 32 393 326 8 31 chr1 189219661 189219790 -92973874 + MLT1K LTR MaLR 99 224 -364 2182 85 14 0 chr1 189219894 189220187 -92973477 - AluSx SINE Alu -15 297 1 378 214 10 39 chr1 189220330 189220433 -92973231 + LTR67 LTR ERVL 458 557 0 1813 199 74 64 chr1 189220450 189221052 -92972612 - MLT1E3 LTR MaLR 0 624 1 750 231 66 33 chr1 189221105 189221347 -92972317 + MLT1K LTR MaLR 339 588 0 2617 138 11 47 chr1 189221678 189221968 -92971696 - Tigger2a DNA MER2_type -2274 434 164 2095 113 0 7 chr1 189221968 189222278 -92971386 - AluSx SINE Alu -4 308 1 2617 138 11 47 chr1 189222278 189222436 -92971228 - Tigger2a DNA MER2_type -2544 164 2 1526 171 7 33 chr1 189222564 189222869 -92970795 - AluJo SINE Alu -15 297 1 180 0 0 0 chr1 189222930 189222950 -92970714 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1844 103 59 4 chr1 189222966 189223239 -92970425 - AluSq SINE Alu -25 288 1 255 326 163 0 chr1 189223245 189223343 -92970321 - MIR SINE MIR -65 143 30 291 301 160 28 chr1 189223347 189223560 -92970104 + MIR SINE MIR 12 252 -10 717 243 0 13 chr1 189224135 189224287 -92969377 + MIR3 SINE MIR 34 183 -25 317 246 39 70 chr1 189224981 189225097 -92968567 - MIR SINE MIR -107 101 14 522 313 64 36 chr1 189225502 189225751 -92967913 - MIR SINE MIR -6 256 1 424 286 138 10 chr1 189225847 189226050 -92967614 - MIR SINE MIR -32 230 2 420 230 184 13 chr1 189226199 189226351 -92967313 - MER91A DNA MER1_type 0 196 19 1444 208 53 32 chr1 189226504 189226669 -92966995 + MLT1B LTR MaLR 4 164 -226 2481 59 0 0 chr1 189226669 189226975 -92966689 + AluY SINE Alu 1 306 -5 1444 208 53 32 chr1 189226975 189227188 -92966476 + MLT1B LTR MaLR 164 390 0 204 289 0 79 chr1 189227798 189227874 -92965790 - L2 LINE L2 -62 3210 3141 381 240 78 31 chr1 189228610 189228739 -92964925 + L1ME LINE L1 5299 5433 -688 246 204 19 19 chr1 189229115 189229169 -92964495 + MIR SINE MIR 82 135 -73 385 271 52 13 chr1 189229197 189229352 -92964312 - L1MC5 LINE L1 -51 7910 7750 369 256 244 0 chr1 189229351 189229523 -92964141 + L1ME LINE L1 5549 5762 -359 * 443 316 72 16 chr1 189229541 189229734 -92963930 + MLT1K LTR MaLR 15 218 -370 270 156 109 16 chr1 189229851 189229915 -92963749 + MLT1K LTR MaLR 508 577 -11 225 333 94 0 chr1 189229944 189230082 -92963582 + L1ME LINE L1 5782 5932 -189 23 0 0 0 chr1 189230257 189230280 -92963384 + AT_rich Low_complexity Low_complexity 1 23 0 2580 48 0 0 chr1 189230753 189231062 -92962602 - AluY SINE Alu -2 309 1 333 0 0 0 chr1 189231274 189231311 -92962353 + (CAG)n Simple_repeat Simple_repeat 2 38 0 195 162 0 0 chr1 189233029 189233066 -92960598 + (CAAG)n Simple_repeat Simple_repeat 2 38 0 327 279 162 18 chr1 189233308 189233419 -92960245 - MER5A DNA MER1_type -7 182 56 269 246 144 76 chr1 189233334 189233452 -92960212 + MER5A DNA MER1_type 43 168 -21 * 2234 101 0 0 chr1 189233853 189234151 -92959513 + AluY SINE Alu 1 298 -13 181 253 12 96 chr1 189235146 189235229 -92958435 - L2 LINE L2 -13 3259 3184 475 241 43 121 chr1 189235476 189235758 -92957906 + MIR SINE MIR 3 262 0 1784 205 68 35 chr1 189236159 189236432 -92957232 + Charlie4a DNA MER1_type 4 301 -1660 1421 167 87 7 chr1 189236432 189236708 -92956956 + AluSx SINE Alu 1 298 -14 1784 205 68 35 chr1 189236708 189236922 -92956742 + Charlie4a DNA MER1_type 301 507 -1 2217 92 3 0 chr1 189237249 189237544 -92956120 + AluY SINE Alu 1 296 -15 2226 96 0 0 chr1 189238527 189238818 -92954846 + AluSx SINE Alu 2 292 -20 198 267 17 50 chr1 189239829 189239889 -92953775 - L2 LINE L2 -85 3228 3171 2331 86 0 0 chr1 189240268 189240570 -92953094 - AluSg SINE Alu -8 302 1 1691 153 0 24 chr1 189240577 189240864 -92952800 - AluJb SINE Alu -22 290 11 1805 155 3 0 chr1 189240883 189241173 -92952491 - AluSx SINE Alu -18 294 4 182 308 166 47 chr1 189241296 189241682 -92951982 - L2 LINE L2 -653 2661 2230 266 241 65 36 chr1 189242364 189242487 -92951177 + MIR SINE MIR 45 169 -62 318 224 15 0 chr1 189242619 189242686 -92950978 - MER5B DNA MER1_type -110 68 1 668 256 92 60 chr1 189242720 189243001 -92950663 - MER102b DNA MER1_type -45 296 7 381 235 47 12 chr1 189243052 189243137 -92950527 + MIR SINE MIR 86 173 -89 2306 94 0 0 chr1 189243652 189243960 -92949704 + AluSx SINE Alu 1 308 -4 202 333 15 0 chr1 189244874 189244940 -92948724 - MIR SINE MIR -122 140 74 313 267 44 56 chr1 189245105 189245285 -92948379 - LTR31 LTR ERV1 -9 610 433 5764 73 24 16 chr1 189245689 189246507 -92947157 - L1MA3 LINE L1 0 6305 5481 537 203 65 59 chr1 189247444 189247597 -92946067 + MIR3 SINE MIR 51 204 -4 1555 143 31 62 chr1 189247604 189247926 -92945738 - AluJo SINE Alu 0 312 1 840 249 107 73 chr1 189248145 189248527 -92945137 + L2 LINE L2 2913 3307 -6 230 250 31 0 chr1 189248946 189249010 -92944654 + L2 LINE L2 3207 3272 0 415 321 66 0 chr1 189249200 189249337 -92944327 + MIR SINE MIR 113 258 -4 2146 101 14 0 chr1 189249368 189249664 -92944000 - AluSx SINE Alu -12 300 1 2632 84 43 0 chr1 189250249 189250618 -92943046 - L1PA8 LINE L1 -1 6171 5787 216 299 102 114 chr1 189250831 189251303 -92942361 - L2 LINE L2 0 3272 2807 1671 155 7 18 chr1 189251363 189251818 -92941846 + AluJb SINE Alu 4 455 0 385 291 30 24 chr1 189251821 189251986 -92941678 + L1ME3A LINE L1 4540 4705 -1441 520 258 121 40 chr1 189252253 189252309 -92941355 - LTR16A LTR ERVL 0 450 400 1991 135 82 6 chr1 189252309 189252649 -92941015 + MER47A DNA MER2_type 1 366 0 520 258 121 40 chr1 189252649 189252790 -92940874 - LTR16A LTR ERVL -50 400 237 2403 209 118 43 chr1 189252799 189252971 -92940693 + L1ME3A LINE L1 5399 5557 -613 2182 94 0 3 chr1 189252971 189253259 -92940405 - AluSc SINE Alu -22 287 1 2403 209 118 43 chr1 189253259 189253332 -92940332 + L1ME3A LINE L1 5557 5623 -547 1841 145 3 10 chr1 189253332 189253642 -92940022 - AluJb SINE Alu -4 308 1 2403 209 118 43 chr1 189253642 189254092 -92939572 + L1ME3A LINE L1 5623 6147 -23 907 227 5 5 chr1 189254094 189254279 -92939385 - MLT1F LTR MaLR -13 529 345 246 120 20 40 chr1 189254317 189254367 -92939297 - MLT1E1 LTR MaLR -571 83 35 1219 278 82 18 chr1 189255628 189256202 -92937462 + L2 LINE L2 2707 3313 0 1285 101 152 0 chr1 189256238 189256436 -92937228 + MER30 DNA MER1_type 3 230 0 293 248 55 55 chr1 189256909 189257018 -92936646 - MIR SINE MIR -1 261 153 279 173 0 0 chr1 189257018 189257070 -92936594 + MER46C DNA MER2_type 1 52 -286 202 114 0 29 chr1 189257292 189257327 -92936337 + (TTG)n Simple_repeat Simple_repeat 3 36 0 427 143 29 0 chr1 189257710 189257780 -92935884 + MER46C DNA MER2_type 258 329 -9 331 225 67 58 chr1 189257791 189257911 -92935753 - MIR SINE MIR -62 146 33 1813 139 7 30 chr1 189259688 189259991 -92933673 + AluJb SINE Alu 3 298 -14 359 97 0 16 chr1 189259993 189260055 -92933609 + (TG)n Simple_repeat Simple_repeat 1 61 0 987 241 124 63 chr1 189260107 189260485 -92933179 + MLT1I LTR MaLR 1 401 -8 240 246 43 14 chr1 189260485 189260554 -92933110 - MIR SINE MIR -62 200 130 4444 65 14 0 chr1 189260884 189261450 -92932214 - L1PA8 LINE L1 -7 6165 5592 5346 61 1 1 chr1 189261459 189262128 -92931536 - L1PA8 LINE L1 0 6172 5504 7574 115 19 18 chr1 189262129 189263247 -92930417 - L1P3 LINE L1 -5338 1123 5 368 343 0 22 chr1 189263270 189263407 -92930257 - MIR3 SINE MIR -62 146 13 947 226 19 10 chr1 189263653 189263861 -92929803 - MER63A DNA MER1_type 0 210 1 2377 140 26 21 chr1 189264093 189264479 -92929185 + MER61D LTR ERV1 114 501 0 675 213 33 47 chr1 189264479 189264629 -92929035 + MER61D-int LTR ERV1 2 149 -5068 1748 113 0 64 chr1 189264643 189264788 -92928876 - AluSx SINE Alu -48 264 144 2169 125 0 0 chr1 189264788 189265093 -92928571 - AluSx SINE Alu -7 305 1 1748 113 0 64 chr1 189265093 189265229 -92928435 - AluSx SINE Alu -168 144 1 3134 152 39 13 chr1 189265240 189265773 -92927891 + MER61D-int LTR ERV1 1407 1953 -3633 1367 111 0 5 chr1 189265759 189265948 -92927716 + MER61D-int LTR ERV1 3806 3993 -1224 * 1994 133 20 0 chr1 189265951 189266245 -92927419 + MER61D-int LTR ERV1 4918 5217 0 2235 124 69 42 chr1 189266286 189266319 -92927345 + MER61D LTR ERV1 114 145 -356 2249 112 6 13 chr1 189266319 189266633 -92927031 + AluSx SINE Alu 1 312 0 2235 124 69 42 chr1 189266633 189266977 -92926687 + MER61D LTR ERV1 145 501 0 610 306 228 14 chr1 189267082 189267867 -92925797 + L2 LINE L2 1821 2773 -541 4099 172 39 67 chr1 189267870 189268968 -92924696 - L1MB5 LINE L1 0 6174 5109 473 222 170 7 chr1 189268985 189269120 -92924544 + MIR SINE MIR 105 261 -1 2407 94 0 0 chr1 189269410 189269708 -92923956 - AluSx SINE Alu -14 298 1 1856 195 67 31 chr1 189269873 189270324 -92923340 + MLT1C LTR MaLR 1 467 0 2144 93 32 0 chr1 189270580 189270859 -92922805 + AluSp SINE Alu 16 303 -10 741 279 29 10 chr1 189271465 189271673 -92921991 - LTR16A LTR ERVL -8 442 231 2267 289 56 34 chr1 189271737 189271785 -92921879 - HERV16 LTR ERVL -2697 2331 2286 4265 162 63 5 chr1 189271785 189272525 -92921139 - LTR39 LTR ERV1 0 783 1 2267 289 56 34 chr1 189272525 189274087 -92919577 - HERV16 LTR ERVL -2742 2286 589 900 190 11 17 chr1 189274107 189274286 -92919378 + LTR28 LTR ERV1 1 178 -842 1050 215 53 48 chr1 189274314 189274688 -92918976 + LTR27 LTR ERV1 121 636 0 1221 339 25 14 chr1 189274689 189275247 -92918417 - HERV16 LTR ERVL -4422 574 11 239 241 19 0 chr1 189275258 189275312 -92918352 - LTR16A LTR ERVL -5 445 391 1103 125 20 0 chr1 189275312 189275486 -92918178 + AluSp SINE Alu 142 313 0 751 265 182 38 chr1 189275486 189275832 -92917832 - LTR16A LTR ERVL -55 401 8 2004 140 0 0 chr1 189276269 189276561 -92917103 + AluSx SINE Alu 3 294 -18 784 164 8 0 chr1 189276747 189276875 -92916789 - FLAM_C SINE Alu -12 131 3 182 289 0 19 chr1 189276951 189277003 -92916661 - L2 LINE L2 -8 3264 3214 251 284 50 57 chr1 189277050 189277191 -92916473 - MLT1J LTR MaLR -25 486 347 235 94 0 0 chr1 189277232 189277264 -92916400 - MER53 DNA DNA -1 188 157 785 177 0 73 chr1 189277264 189277421 -92916243 - MER53 DNA DNA -8 181 14 198 0 0 0 chr1 189277421 189277443 -92916221 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2016 141 3 7 chr1 189277448 189277746 -92915918 - AluSx SINE Alu -15 297 1 785 177 0 73 chr1 189277746 189277774 -92915890 - MER53 DNA DNA -179 10 4 6134 119 16 9 chr1 189278806 189279566 -92914098 + L1MA4 LINE L1 5335 6104 -196 2086 88 85 0 chr1 189279566 189279838 -92913826 - AluSx SINE Alu -17 295 1 6134 119 16 9 chr1 189279838 189280035 -92913629 + L1MA4 LINE L1 6104 6298 -2 299 271 59 17 chr1 189280052 189280170 -92913494 - MLT1K LTR MaLR -92 496 374 2309 125 5 57 chr1 189280844 189281180 -92912484 + THE1B LTR MaLR 1 316 -48 2340 94 0 0 chr1 189281180 189281478 -92912186 - AluY SINE Alu -13 298 1 2309 125 5 57 chr1 189281478 189281525 -92912139 + THE1B LTR MaLR 316 364 0 2146 130 3 0 chr1 189281809 189282109 -92911555 + AluSx SINE Alu 3 303 -9 28 29 0 0 chr1 189282753 189282788 -92910876 + AT_rich Low_complexity Low_complexity 1 35 0 708 238 73 121 chr1 189282871 189282989 -92910675 + L1ME3 LINE L1 5449 5571 -591 2333 106 0 3 chr1 189282989 189283300 -92910364 + AluSx SINE Alu 1 310 -2 708 238 73 121 chr1 189283300 189283559 -92910105 + L1ME3 LINE L1 5571 5795 -367 1130 146 0 0 chr1 189283559 189283723 -92909941 + FRAM SINE Alu 1 164 -2 708 238 73 121 chr1 189283723 189283881 -92909783 + L1ME3 LINE L1 5795 5959 -203 1369 182 78 107 chr1 189284795 189285219 -92908445 + MLT1J LTR MaLR 1 409 -102 1966 148 0 0 chr1 189285219 189285510 -92908154 - AluJb SINE Alu 0 312 22 1369 182 78 107 chr1 189285510 189285608 -92908056 + MLT1J LTR MaLR 409 508 -3 2465 139 15 15 chr1 189285771 189286173 -92907491 - MER57A LTR ERV1 0 403 2 227 331 29 22 chr1 189286313 189286449 -92907215 + MER5A DNA MER1_type 47 183 -6 2398 72 13 13 chr1 189287418 189287722 -92905942 - AluY SINE Alu -7 304 1 911 210 93 80 chr1 189287973 189288042 -92905622 + MER2 DNA MER2_type 2 69 -276 2569 92 17 0 chr1 189288042 189288391 -92905273 - THE1A LTR MaLR 0 355 1 12074 81 11 6 chr1 189288391 189289964 -92903700 - THE1A-int LTR MaLR 0 1580 1 2716 91 8 0 chr1 189289964 189290316 -92903348 - THE1A LTR MaLR 0 355 1 911 210 93 80 chr1 189290316 189290346 -92903318 + MER2 DNA MER2_type 69 97 -248 2690 30 3 0 chr1 189290346 189290647 -92903017 + AluY SINE Alu 1 302 -9 911 210 93 80 chr1 189290647 189290868 -92902796 + MER2 DNA MER2_type 97 329 -16 212 137 0 78 chr1 189290991 189291042 -92902622 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 219 310 186 21 chr1 189291441 189291499 -92902165 + MIR SINE MIR 79 126 -136 1926 176 3 3 chr1 189291499 189291806 -92901858 + AluJb SINE Alu 2 308 -4 219 310 186 21 chr1 189291806 189291892 -92901772 + MIR SINE MIR 126 247 -15 225 320 50 0 chr1 189292125 189292225 -92901439 - MIR SINE MIR -71 137 33 255 175 0 0 chr1 189292846 189292886 -92900778 + MER57A LTR ERV1 295 334 -69 22 0 0 0 chr1 189292886 189292908 -92900756 + AT_rich Low_complexity Low_complexity 1 22 0 202 221 39 78 chr1 189293339 189293416 -92900248 - L2 LINE L2 -9 3263 3190 265 285 95 25 chr1 189293556 189293714 -92899950 + MIR SINE MIR 22 190 -72 341 276 49 32 chr1 189294407 189294530 -92899134 - MIR SINE MIR -99 163 39 2457 95 0 0 chr1 189294532 189294838 -92898826 - AluSx SINE Alu -6 306 1 711 233 112 30 chr1 189294924 189295298 -92898366 + MLT1J LTR MaLR 24 509 -2 409 284 200 5 chr1 189295547 189295737 -92897927 + MIR SINE MIR 20 246 -16 23 33 0 0 chr1 189296861 189296891 -92896773 + AT_rich Low_complexity Low_complexity 1 30 0 539 199 186 19 chr1 189297149 189297212 -92896452 - MER53 DNA DNA 0 189 138 2302 159 38 24 chr1 189297212 189297284 -92896380 + MSTA LTR MaLR 1 70 -358 2233 65 42 49 chr1 189297284 189297592 -92896072 + AluY SINE Alu 1 306 -5 2302 159 38 24 chr1 189297592 189297941 -92895723 + MSTA LTR MaLR 70 428 0 8404 168 75 7 chr1 189297941 189299487 -92894177 + MSTA-int LTR MaLR 1 1651 0 2496 161 47 0 chr1 189299487 189299896 -92893768 + MSTA LTR MaLR 1 428 0 539 199 186 19 chr1 189299896 189299991 -92893673 - MER53 DNA DNA -50 139 2 2066 202 81 51 chr1 189301436 189302006 -92891658 - L1ME3 LINE L1 -8 6154 5568 216 143 0 0 chr1 189302148 189302190 -92891474 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 1841 208 54 44 chr1 189302205 189302801 -92890863 - L1MC5 LINE L1 -61 7900 7299 225 217 0 0 chr1 189302836 189302882 -92890782 - L1MC4 LINE L1 -607 7435 7390 1904 158 37 57 chr1 189303502 189303908 -92889756 - L1MB2 LINE L1 -1 6170 5773 480 146 12 0 chr1 189303909 189303991 -92889673 - AluJo SINE Alu 0 312 230 991 141 0 7 chr1 189303992 189304134 -92889530 - AluJo SINE Alu -171 141 1 2245 132 28 122 chr1 189304137 189304362 -92889302 - L1MB2 LINE L1 -391 5780 5632 2708 45 0 0 chr1 189304362 189304673 -92888991 - AluYa5 SINE Alu 0 311 1 2245 132 28 122 chr1 189304673 189304978 -92888686 - L1MB2 LINE L1 -539 5632 5300 522 104 31 0 chr1 189304984 189305080 -92888584 + CT-rich Low_complexity Low_complexity 4 102 0 1923 150 0 21 chr1 189305080 189305412 -92888252 - AluJo SINE Alu 0 326 1 6153 192 19 19 chr1 189305413 189306664 -92887000 - L1MB2 LINE L1 -836 5310 4057 2347 125 0 0 chr1 189306664 189306976 -92886688 + AluSx SINE Alu 1 312 0 6153 192 19 19 chr1 189306976 189307020 -92886644 - L1MB2 LINE L1 -2088 4058 4015 2155 121 0 0 chr1 189307026 189307344 -92886320 - AluSg SINE Alu 0 318 1 180 0 0 0 chr1 189307970 189307990 -92885674 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 2258 116 0 0 chr1 189310266 189310568 -92883096 + AluSx SINE Alu 1 302 -10 197 279 0 29 chr1 189310764 189310832 -92882832 - L2 LINE L2 -340 2973 2908 375 23 0 0 chr1 189311819 189311880 -92881784 + (TG)n Simple_repeat Simple_repeat 1 105 0 375 23 0 0 chr1 189311880 189311924 -92881740 + (TG)n Simple_repeat Simple_repeat 1 44 0 2214 99 3 0 chr1 189312103 189312385 -92881279 + AluSx SINE Alu 1 283 -29 2186 119 0 7 chr1 189312448 189312750 -92880914 + AluSg SINE Alu 2 301 -9 237 65 0 0 chr1 189312750 189312781 -92880883 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 * 510 71 20 20 chr1 189312779 189312877 -92880787 + (GAAA)n Simple_repeat Simple_repeat 4 101 0 338 162 27 40 chr1 189312877 189312951 -92880713 - MLT1L LTR MaLR -70 545 473 362 270 17 17 chr1 189312966 189313081 -92880583 - L2 LINE L2 -5 3308 3194 461 263 178 42 chr1 189313081 189313317 -92880347 - MLT1L LTR MaLR -200 415 148 237 246 119 87 chr1 189313340 189313408 -92880256 - MER5B DNA MER1_type -41 137 73 1299 170 135 8 chr1 189313408 189313667 -92879997 - AluJo SINE Alu -10 292 1 237 246 119 87 chr1 189313667 189313724 -92879940 - MER5B DNA MER1_type -105 73 8 2050 148 0 13 chr1 189314406 189314711 -92878953 - AluJb SINE Alu -11 301 1 338 195 0 26 chr1 189314711 189314788 -92878876 - L1MC4 LINE L1 -9 8033 7959 * 2006 231 70 12 chr1 189314779 189315363 -92878301 - L1MC4 LINE L1 -305 7737 7120 1868 142 51 14 chr1 189315369 189315664 -92878000 - AluSg SINE Alu 0 310 5 1107 200 27 18 chr1 189315674 189315899 -92877765 + MSTD LTR MaLR 3 229 -167 216 0 0 0 chr1 189315938 189315962 -92877702 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 635 191 35 0 chr1 189315964 189316079 -92877585 - AluJb SINE Alu -192 120 2 886 171 20 0 chr1 189316098 189316244 -92877420 + MSTD LTR MaLR 248 396 0 2850 219 58 9 chr1 189316244 189316879 -92876785 - L1MC4 LINE L1 -916 7126 6461 189 0 0 0 chr1 189317176 189317197 -92876467 + (TG)n Simple_repeat Simple_repeat 2 22 0 216 48 72 60 chr1 189317256 189317339 -92876325 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 619 150 61 95 chr1 189317696 189317843 -92875821 - FLAM_C SINE Alu 0 143 2 255 143 0 0 chr1 189317844 189317886 -92875778 - L2 LINE L2 -6 3307 3266 2425 103 0 0 chr1 189317947 189318257 -92875407 - AluSg SINE Alu 0 310 1 2045 103 11 11 chr1 189318257 189318539 -92875125 - AluSg SINE Alu -15 295 14 472 263 30 15 chr1 189319600 189319733 -92873931 - MIR SINE MIR -120 142 8 180 77 0 0 chr1 189320467 189320493 -92873171 + (TCC)n Simple_repeat Simple_repeat 2 27 0 192 77 0 0 chr1 189320502 189320528 -92873136 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 300 237 149 18 chr1 189320700 189320814 -92872850 + HAL1 LINE L1 1083 1211 -1296 230 179 18 0 chr1 189321048 189321104 -92872560 + CT-rich Low_complexity Low_complexity 2 58 0 288 0 0 0 chr1 189321609 189321641 -92872023 + (A)n Simple_repeat Simple_repeat 1 32 0 1890 168 0 10 chr1 189322372 189322675 -92870989 - AluJb SINE Alu -12 300 1 207 70 70 0 chr1 189323661 189323704 -92869960 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 212 237 0 0 chr1 189324407 189324445 -92869219 + MER91 DNA MER1_type 44 81 -115 234 261 42 109 chr1 189324868 189324987 -92868677 + L2 LINE L2 3201 3311 -2 270 0 0 0 chr1 189325829 189325859 -92867805 + (TG)n Simple_repeat Simple_repeat 2 31 0 2212 109 33 0 chr1 189327464 189327767 -92865897 - AluSq SINE Alu 0 313 1 794 337 96 16 chr1 189327789 189328166 -92865498 - L2 LINE L2 -8 3264 2858 315 0 0 0 chr1 189328618 189328653 -92865011 + (CA)n Simple_repeat Simple_repeat 1 35 0 246 291 241 7 chr1 189329183 189329324 -92864340 - MIR SINE MIR -2 260 87 390 239 84 97 chr1 189329689 189329823 -92863841 - MIR3 SINE MIR -23 185 51 2264 85 0 0 chr1 189329823 189330151 -92863513 + AluY SINE Alu 1 328 0 390 239 84 97 chr1 189330151 189330170 -92863494 - MIR3 SINE MIR -157 51 33 2330 112 0 3 chr1 189330368 189330681 -92862983 - AluSx SINE Alu 0 312 1 790 213 58 106 chr1 189331029 189331439 -92862225 - MLT1C LTR MaLR 0 467 51 1950 163 3 3 chr1 189331439 189331734 -92861930 - AluJb SINE Alu -14 298 4 790 213 58 106 chr1 189331734 189331778 -92861886 - MLT1C LTR MaLR -416 51 6 2316 101 3 0 chr1 189332324 189332622 -92861042 + AluSp SINE Alu 1 299 -14 837 255 142 28 chr1 189332752 189333105 -92860559 - MLT1I LTR MaLR -9 400 8 187 310 70 10 chr1 189333112 189333212 -92860452 - L2 LINE L2 -217 3055 2950 264 313 75 34 chr1 189333913 189334060 -92859604 + MIR SINE MIR 93 245 -17 741 235 126 17 chr1 189334496 189334726 -92858938 + MIR SINE MIR 6 260 -2 182 379 0 0 chr1 189334788 189334846 -92858818 + L3b LINE CR1 1515 1572 -11 2271 108 3 0 chr1 189335085 189335372 -92858292 + AluSp SINE Alu 1 288 -25 453 19 0 0 chr1 189335372 189335426 -92858238 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1304 241 80 11 chr1 189335839 189336188 -92857476 + L3 LINE CR1 519 891 -686 246 216 39 0 chr1 189336191 189336242 -92857422 - L2 LINE L2 0 3313 3261 186 43 0 0 chr1 189337334 189337357 -92856307 + (A)n Simple_repeat Simple_repeat 1 23 0 1069 115 72 48 chr1 189337409 189337618 -92856046 - L1PA8 LINE L1 0 6172 5959 2251 115 0 0 chr1 189337743 189338038 -92855626 + AluSq SINE Alu 9 303 -10 866 143 8 8 chr1 189338194 189338327 -92855337 + FLAM_C SINE Alu 1 133 -10 1610 161 13 65 chr1 189338334 189338644 -92855020 + AluJo SINE Alu 7 300 -12 586 291 96 29 chr1 189338969 189339282 -92854382 - L1ME4a LINE L1 -213 5908 5575 449 337 32 88 chr1 189339767 189340141 -92853523 - L2 LINE L2 0 3272 2920 208 309 196 13 chr1 189340905 189341053 -92852611 + MIR SINE MIR 41 207 -55 2002 184 63 0 chr1 189341758 189342123 -92851541 - MLT1B LTR MaLR -2 388 1 2528 82 0 0 chr1 189342906 189343209 -92850455 - AluSx SINE Alu -9 303 1 542 331 99 52 chr1 189343602 189344165 -92849499 - L1ME4a LINE L1 -237 5884 5299 227 236 73 89 chr1 189344261 189344384 -92849280 - MER5B DNA MER1_type 0 178 58 580 342 59 28 chr1 189344440 189344829 -92848835 - L2 LINE L2 -6 3266 2866 * 732 313 47 4 chr1 189344819 189345052 -92848612 + MIR SINE MIR 20 262 0 1947 152 90 15 chr1 189345065 189345454 -92848210 - LTR47B LTR ERVL 0 443 26 225 369 63 40 chr1 189345542 189345794 -92847870 - L2 LINE L2 -583 2731 2474 222 281 187 50 chr1 189347002 189347141 -92846523 - MIR SINE MIR -77 185 28 26 30 0 0 chr1 189347229 189347262 -92846402 + AT_rich Low_complexity Low_complexity 1 33 0 517 202 149 87 chr1 189347854 189348062 -92845602 + MIR SINE MIR 36 256 -6 219 69 0 0 chr1 189348779 189348808 -92844856 + (CA)n Simple_repeat Simple_repeat 1 29 0 1285 122 0 0 chr1 189348809 189348981 -92844683 - FRAM SINE Alu -6 170 1 670 276 85 69 chr1 189349237 189349297 -92844367 - L1MC4a LINE L1 -597 5583 5525 2147 128 0 28 chr1 189349297 189349618 -92844046 - AluSx SINE Alu 0 312 1 670 276 85 69 chr1 189349618 189350168 -92843496 - L1MC4a LINE L1 -655 5525 5267 590 278 121 14 chr1 189350981 189351204 -92842460 - MIR SINE MIR -2 260 14 1519 178 33 40 chr1 189351358 189351661 -92842003 - AluJo SINE Alu -11 301 1 454 273 87 44 chr1 189352024 189352207 -92841457 - MIR SINE MIR -38 224 34 180 111 0 0 chr1 189353287 189353314 -92840350 + (TC)n Simple_repeat Simple_repeat 2 28 0 187 298 0 0 chr1 189353862 189353909 -92839755 - MIR3 SINE MIR -34 174 128 902 284 5 5 chr1 189354718 189354940 -92838724 - MIR SINE MIR 0 262 41 489 262 67 24 chr1 189354953 189355117 -92838547 - MIR SINE MIR -81 181 11 550 178 0 97 chr1 189355356 189355509 -92838155 - L1MB7 LINE L1 -2 6182 6042 977 106 0 0 chr1 189355522 189355645 -92838019 + AluSq/x SINE Alu 13 135 -177 2092 146 7 0 chr1 189355645 189355954 -92837710 + AluSx SINE Alu 1 311 -1 3211 211 50 6 chr1 189355954 189356694 -92836970 - L1ME1 LINE L1 -110 6056 5285 2137 129 0 0 chr1 189356705 189356999 -92836665 - AluSx SINE Alu -18 294 1 643 310 82 16 chr1 189357055 189357300 -92836364 + MIR SINE MIR 2 262 0 1002 99 280 16 chr1 189357676 189357858 -92835806 - MER30 DNA MER1_type 0 230 1 244 200 22 0 chr1 189358758 189358803 -92834861 - L2 LINE L2 -1 3271 3226 2113 117 24 3 chr1 189358896 189359187 -92834477 + AluSx SINE Alu 1 297 -15 280 291 140 68 chr1 189359195 189359608 -92834056 + L2 LINE L2 2871 3313 0 319 282 87 37 chr1 189361592 189361833 -92831831 + L2 LINE L2 2369 2621 -693 262 273 26 13 chr1 189361977 189362054 -92831610 + L2 LINE L2 3215 3292 -21 312 279 95 77 chr1 189362498 189362720 -92830944 + L2 LINE L2 2596 2821 -493 233 288 42 25 chr1 189362811 189362929 -92830735 + L2 LINE L2 2987 3106 -166 204 67 0 0 chr1 189362957 189362987 -92830677 + (TCC)n Simple_repeat Simple_repeat 2 31 0 481 224 127 42 chr1 189363031 189363196 -92830468 + L2 LINE L2 3121 3299 -14 2033 177 89 40 chr1 189363206 189363687 -92829977 - MLT1D LTR MaLR 0 505 1 306 235 78 85 chr1 189363806 189363959 -92829705 - MIR SINE MIR -52 210 59 210 191 24 0 chr1 189364061 189364103 -92829561 + GA-rich Low_complexity Low_complexity 2 44 0 426 254 26 42 chr1 189364409 189364568 -92829096 - MIR SINE MIR -59 149 37 608 303 41 103 chr1 189364576 189365042 -92828622 + L2 LINE L2 2836 3272 0 2090 179 19 7 chr1 189365348 189365772 -92827892 - L1MB8 LINE L1 -5 6173 5745 2691 97 0 24 chr1 189365772 189365812 -92827852 - THE1B LTR MaLR 0 364 325 2336 114 0 0 chr1 189365812 189366120 -92827544 + AluY SINE Alu 1 308 -3 2691 97 0 24 chr1 189366120 189366452 -92827212 - THE1B LTR MaLR -39 325 1 1150 244 8 8 chr1 189366893 189367135 -92826529 - MIR SINE MIR 0 262 21 329 242 194 16 chr1 189367298 189367422 -92826242 - MIR3 SINE MIR -62 146 1 2395 132 132 96 chr1 189368270 189368909 -92824755 - MER4A LTR ERV1 0 664 3 1113 284 134 32 chr1 189369023 189369730 -92823934 + L2 LINE L2 2128 2906 -408 340 263 190 15 chr1 189369848 189369985 -92823679 + L2 LINE L2 3105 3265 -48 232 314 167 6 chr1 189370038 189370194 -92823470 + MIR SINE MIR 3 183 -79 195 42 0 0 chr1 189371292 189371316 -92822348 + (GGA)n Simple_repeat Simple_repeat 1 24 0 1603 162 39 29 chr1 189371351 189371660 -92822004 - AluJo SINE Alu 0 312 1 183 188 62 94 chr1 189371661 189371725 -92821939 - L2 LINE L2 -27 3245 3184 2323 105 7 0 chr1 189373060 189373355 -92820309 - AluSx SINE Alu -15 297 1 378 0 0 0 chr1 189373556 189373598 -92820066 + (TG)n Simple_repeat Simple_repeat 2 43 0 569 288 86 30 chr1 189374063 189374298 -92819366 - MIR SINE MIR 0 262 15 195 180 40 20 chr1 189374309 189374359 -92819305 - L2 LINE L2 0 3272 3222 2292 102 3 0 chr1 189375480 189375783 -92817881 + AluSp SINE Alu 1 304 -9 252 286 95 12 chr1 189377246 189377330 -92816334 + MIR3 SINE MIR 70 160 -48 2556 59 3 0 chr1 189378130 189378435 -92815229 + AluY SINE Alu 1 306 -5 182 239 68 45 chr1 189379376 189379464 -92814200 - MIR3 SINE MIR -7 201 112 237 257 108 27 chr1 189380008 189380082 -92813582 + L2 LINE L2 3188 3267 -5 2324 105 23 0 chr1 189380093 189380398 -92813266 + AluSx SINE Alu 1 312 0 1854 179 0 0 chr1 189381292 189381583 -92812081 + AluJb SINE Alu 14 304 -8 828 193 91 0 chr1 189381965 189382152 -92811512 - MER20 DNA MER1_type 0 219 16 749 163 0 57 chr1 189383406 189383547 -92810117 - FLAM_A SINE Alu 0 133 1 266 273 22 81 chr1 189383845 189383985 -92809679 - MIR SINE MIR -25 183 45 1487 170 75 11 chr1 189386426 189386708 -92806956 - AluJb SINE Alu -12 300 1 1048 220 57 101 chr1 189387200 189387339 -92806325 - LTR37B LTR ERV1 -12 456 312 1864 167 3 3 chr1 189387339 189387638 -92806026 - AluJo SINE Alu -12 300 2 1048 220 57 101 chr1 189387638 189387975 -92805689 - LTR37B LTR ERV1 -156 312 1 2635 45 3 0 chr1 189389656 189389985 -92803679 - AluY SINE Alu 0 330 1 844 224 53 76 chr1 189390127 189390587 -92803077 - MLT1C LTR MaLR -20 485 34 845 288 150 14 chr1 189390591 189391011 -92802653 + L2 LINE L2 2837 3313 0 2492 73 0 22 chr1 189391255 189391572 -92802092 + AluY SINE Alu 2 311 0 238 290 9 84 chr1 189392111 189392140 -92801524 - MIR3 SINE MIR -38 170 140 2095 128 0 0 chr1 189392140 189392493 -92801171 - AluSx SINE Alu 0 353 1 238 290 9 84 chr1 189392493 189392568 -92801096 - MIR3 SINE MIR -68 140 72 271 313 36 0 chr1 189392935 189393018 -92800646 - L2 LINE L2 -3 3269 3184 2164 94 14 0 chr1 189393386 189393707 -92799957 + AluSx SINE Alu 3 327 0 758 169 0 0 chr1 189394259 189394377 -92799287 + FLAM_C SINE Alu 1 118 -15 791 217 80 0 chr1 189395241 189395416 -92798248 + MIR SINE MIR 47 235 -27 237 246 14 0 chr1 189397161 189397230 -92796434 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 230 174 0 0 chr1 189398285 189398331 -92795333 - MLT1K LTR MaLR -22 566 521 1895 129 9 94 chr1 189398539 189398880 -92794784 - AluSx SINE Alu 0 312 1 470 275 122 51 chr1 189398900 189399195 -92794469 - MLT1K LTR MaLR -266 322 7 242 128 0 0 chr1 189399415 189399454 -92794210 + MARNA DNA Mariner 193 231 -355 321 276 171 0 chr1 189399480 189399585 -92794079 + L2 LINE L2 3150 3272 0 2102 124 24 0 chr1 189400272 189400570 -92793094 + AluSx SINE Alu 1 305 -7 2495 93 0 0 chr1 189400657 189400968 -92792696 + AluSx SINE Alu 1 311 -1 339 270 72 30 chr1 189401458 189401721 -92791943 - L1ME4a LINE L1 -1 6120 5847 329 358 153 0 chr1 189402830 189402902 -92790762 + L1ME LINE L1 5604 5664 -457 2049 93 12 75 chr1 189402902 189403224 -92790440 + AluJb SINE Alu 1 302 -10 329 358 153 0 chr1 189403224 189403341 -92790323 + L1ME LINE L1 5664 5822 -299 2322 71 37 0 chr1 189403716 189404013 -92789651 + AluSp SINE Alu 1 308 -5 563 257 24 42 chr1 189404862 189405040 -92788624 + MIR SINE MIR 46 222 -40 24 0 0 0 chr1 189405221 189405245 -92788419 + GC_rich Low_complexity Low_complexity 1 24 0 654 0 0 0 chr1 189405612 189405684 -92787980 + tRNA-Pro-CCG tRNA tRNA 1 72 -3 658 0 0 0 chr1 189406375 189406447 -92787217 - tRNA-Pro-CCT tRNA tRNA -3 72 1 1978 72 62 46 chr1 189407194 189407499 -92786165 - AluSq SINE Alu -3 310 1 2407 63 33 3 chr1 189407510 189407812 -92785852 - AluY SINE Alu 0 311 1 543 97 0 0 chr1 189407926 189407998 -92785666 - AluJ/FRAM SINE Alu -20 292 221 2889 200 49 0 chr1 189408010 189408541 -92785123 - MER41D LTR ERV1 0 557 1 204 135 0 0 chr1 189408667 189408704 -92784960 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1996 98 49 7 chr1 189408709 189408996 -92784668 - AluSg SINE Alu -11 299 1 691 125 0 18 chr1 189410706 189410818 -92782846 - AluSg SINE Alu -1 311 202 2475 147 79 36 chr1 189410818 189411288 -92782376 - LTR2B LTR ERV1 0 490 1 1544 68 10 19 chr1 189411288 189411493 -92782171 - AluSg SINE Alu -107 203 1 275 276 9 26 chr1 189413004 189413120 -92780544 + (CGG)n Simple_repeat Simple_repeat 3 116 0 217 271 0 0 chr1 189414802 189414850 -92778814 - L2 LINE L2 -3 3269 3222 481 204 0 56 chr1 189414867 189414975 -92778689 - FLAM_A SINE Alu -34 108 7 855 304 121 27 chr1 189415133 189415873 -92777791 - L2 LINE L2 -424 2890 2004 1523 273 152 25 chr1 189415958 189416190 -92777474 + L2 LINE L2 2401 2602 -711 1843 101 13 91 chr1 189416190 189416358 -92777306 - AluSx SINE Alu -35 277 140 2310 102 0 13 chr1 189416358 189416672 -92776992 - AluSg SINE Alu 0 310 1 1843 101 13 91 chr1 189416672 189416801 -92776863 - AluSx SINE Alu -172 140 3 1523 273 152 25 chr1 189416801 189417371 -92776293 + L2 LINE L2 2602 3306 -7 205 259 281 36 chr1 189417730 189417869 -92775795 - L2 LINE L2 0 3313 3141 21 0 0 0 chr1 189417961 189417982 -92775682 + AT_rich Low_complexity Low_complexity 1 21 0 266 240 124 23 chr1 189418090 189418219 -92775445 + L2 LINE L2 2494 2635 -679 1256 132 5 30 chr1 189418744 189419234 -92774430 - AluSg/x SINE Alu 0 312 121 1781 118 23 138 chr1 189418754 189418922 -92774742 - AluYb8 SINE Alu 0 308 122 2088 102 44 7 chr1 189418922 189419216 -92774448 - AluSq SINE Alu -8 305 1 1781 118 23 138 chr1 189419216 189419234 -92774430 - AluYb8 SINE Alu -186 122 104 216 97 0 0 chr1 189419234 189419265 -92774399 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1781 118 23 138 chr1 189419265 189419395 -92774269 - AluYb8 SINE Alu -204 104 1 2003 134 0 20 chr1 189419871 189420177 -92773487 + AluSx SINE Alu 1 300 -12 672 261 149 22 chr1 189420660 189420882 -92772782 - MIR SINE MIR -12 250 1 2044 134 13 10 chr1 189421154 189421461 -92772203 - AluSq SINE Alu 0 313 6 1862 156 0 7 chr1 189422040 189422323 -92771341 + AluSx SINE Alu 1 281 -31 * 2466 69 0 7 chr1 189422322 189422625 -92771039 - AluY SINE Alu -10 301 1 513 183 0 0 chr1 189422672 189422765 -92770899 + FLAM_C SINE Alu 49 141 -2 1214 258 33 9 chr1 189422773 189423102 -92770562 + MER46C DNA MER2_type 2 338 0 613 164 60 0 chr1 189423195 189423311 -92770353 + FRAM SINE Alu 54 176 0 886 223 6 23 chr1 189423325 189423500 -92770164 - FAM SINE Alu 0 175 4 1673 146 39 0 chr1 189423506 189423760 -92769904 - AluSx SINE Alu -13 299 36 2808 198 8 6 chr1 189423854 189424350 -92769314 - ERVL-D LTR ERVL -3919 1845 1349 2126 130 10 0 chr1 189424350 189424643 -92769021 + AluSx SINE Alu 1 296 -16 1085 145 13 0 chr1 189424643 189424802 -92768862 + AluJo/FRAM SINE Alu 134 294 -18 4196 242 66 14 chr1 189424802 189424862 -92768802 - ERVL-D LTR ERVL -4333 1321 1266 2515 70 0 0 chr1 189424862 189425162 -92768502 + AluY SINE Alu 1 300 -11 4196 242 66 14 chr1 189425162 189426341 -92767323 - ERVL-D LTR ERVL -4388 1266 5 1522 195 27 36 chr1 189426341 189426744 -92766920 - MLT2D LTR ERVL -6 458 70 473 290 104 97 chr1 189426809 189427769 -92765895 + L2 LINE L2 1792 2758 -556 348 357 254 4 chr1 189427847 189428127 -92765537 + L2 LINE L2 2914 3263 -9 2191 79 11 0 chr1 189428799 189429111 -92764553 - AluY SINE Alu 0 315 1 3318 82 7 28 chr1 189429386 189429823 -92763841 + MSTA LTR MaLR 1 428 0 1812 160 11 3 chr1 189429843 189430130 -92763534 - AluSx SINE Alu -23 289 1 182 65 65 0 chr1 189430140 189430171 -92763493 + (CATA)n Simple_repeat Simple_repeat 2 34 0 254 182 0 52 chr1 189430171 189430248 -92763416 + LTR66 LTR ERVL 399 471 -139 226 224 52 0 chr1 189430256 189430314 -92763350 + L2 LINE L2 3208 3268 -4 366 349 128 9 chr1 189430686 189431013 -92762651 + L2 LINE L2 784 1149 -2165 1449 288 144 46 chr1 189431029 189431914 -92761750 + L2 LINE L2 1630 2427 -887 1899 146 7 17 chr1 189431914 189432209 -92761455 - AluJo SINE Alu -20 292 1 2038 129 20 0 chr1 189432218 189432512 -92761152 - AluSx SINE Alu -12 300 1 1449 288 144 46 chr1 189432512 189432635 -92761029 + L2 LINE L2 2434 2748 -566 2000 151 0 0 chr1 189432638 189432930 -92760734 + AluJb SINE Alu 1 292 -20 1885 102 31 0 chr1 189432936 189433190 -92760474 + AluSx SINE Alu 39 300 -12 5596 209 28 9 chr1 189433441 189434102 -92759562 - L1 LINE L1 -908 5238 4542 2322 79 10 0 chr1 189434102 189434393 -92759271 - AluSc SINE Alu -15 294 1 5596 209 28 9 chr1 189434393 189434965 -92758699 - L1 LINE L1 -1604 4542 3982 504 203 90 8 chr1 189434971 189435104 -92758560 - MIR SINE MIR -37 225 82 2292 106 0 0 chr1 189435289 189435591 -92758073 + AluSx SINE Alu 1 302 -10 1755 174 70 58 chr1 189435771 189436184 -92757480 - LTR52 LTR ERVL -3 418 1 574 221 101 0 chr1 189436763 189436921 -92756743 + MER104 DNA Tc2 6 179 -1 223 350 68 42 chr1 189437001 189437238 -92756426 - L2 LINE L2 -217 3055 2813 180 140 100 40 chr1 189437395 189437445 -92756219 + L3 LINE CR1 1374 1426 -151 222 313 134 0 chr1 189437864 189437976 -92755688 + L3b LINE CR1 1103 1229 -354 1522 182 39 18 chr1 189438116 189438402 -92755262 - AluJb SINE Alu -20 292 1 1929 168 81 6 chr1 189438624 189439689 -92753975 - L1MB7 LINE L1 0 6184 4968 502 255 26 13 chr1 189439690 189439843 -92753821 - L1MC4a LINE L1 -1914 5894 5740 291 332 29 0 chr1 189440569 189440686 -92752978 + MIR3 SINE MIR 52 173 -35 2716 215 62 52 chr1 189440979 189441057 -92752607 - L1MC4 LINE L1 -1 8041 7965 2240 98 0 3 chr1 189441057 189441389 -92752275 - AluSq SINE Alu 0 331 1 2716 215 62 52 chr1 189441389 189442132 -92751532 - L1MC4 LINE L1 -77 7965 7211 2543 65 0 3 chr1 189442276 189442583 -92751081 + AluSx SINE Alu 2 307 -5 2372 86 0 13 chr1 189444514 189444817 -92748847 - AluSx SINE Alu -13 299 1 1969 141 7 3 chr1 189444886 189445185 -92748479 - AluSx SINE Alu -11 301 2 668 132 0 53 chr1 189445644 189445758 -92747906 + MER5B DNA MER1_type 27 134 -44 1441 153 61 8 chr1 189445768 189446029 -92747635 - L1MC1 LINE L1 -20 6313 6039 26 0 0 0 chr1 189446060 189446086 -92747578 + AT_rich Low_complexity Low_complexity 1 26 0 1461 165 105 4 chr1 189447047 189447314 -92746350 - AluJb SINE Alu -18 294 1 225 0 0 0 chr1 189447317 189447342 -92746322 + (T)n Simple_repeat Simple_repeat 1 25 0 213 132 0 0 chr1 189447579 189447617 -92746047 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 375 271 9 37 chr1 189447625 189447732 -92745932 - L2 LINE L2 -7 3265 3162 305 285 109 42 chr1 189448285 189448478 -92745186 - L1ME3A LINE L1 0 6170 5965 2104 129 0 16 chr1 189448755 189449058 -92744606 + AluSx SINE Alu 1 298 -14 210 295 0 0 chr1 189449360 189449438 -92744226 + T-rich Low_complexity Low_complexity 1 78 0 203 156 0 0 chr1 189450593 189450625 -92743039 + L2 LINE L2 1963 1994 -1320 5392 254 125 36 chr1 189450711 189451078 -92742586 - L2 LINE L2 -410 2904 2571 2160 84 3 7 chr1 189451078 189451390 -92742274 - AluY SINE Alu 0 311 1 5392 254 125 36 chr1 189451390 189451635 -92742029 - L2 LINE L2 -743 2571 2349 423 0 0 0 chr1 189451635 189451682 -92741982 + (TG)n Simple_repeat Simple_repeat 2 48 0 5392 254 125 36 chr1 189451682 189452982 -92740682 - L2 LINE L2 -965 2349 1166 1252 150 42 19 chr1 189452982 189453195 -92740469 + MER20 DNA MER1_type 2 219 0 2528 161 10 5 chr1 189453205 189453603 -92740061 - MER57A LTR ERV1 -3 400 1 5392 254 125 36 chr1 189453603 189453762 -92739902 - L2 LINE L2 -2156 1158 634 2189 91 54 3 chr1 189454120 189454418 -92739246 + AluSq SINE Alu 1 313 0 3372 147 37 13 chr1 189455615 189456214 -92737450 + L1MC2 LINE L1 5732 6344 0 310 290 47 0 chr1 189457266 189457373 -92736291 + MIR SINE MIR 116 227 -35 513 202 188 58 chr1 189457807 189458015 -92735649 - MER106A DNA MER1_type 0 236 2 207 0 0 0 chr1 189458680 189458703 -92734961 + (T)n Simple_repeat Simple_repeat 1 23 0 369 0 0 0 chr1 189458742 189458783 -92734881 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 199 319 168 0 chr1 189459554 189459667 -92733997 - L2 LINE L2 -5 3267 3136 374 309 96 39 chr1 189459888 189460068 -92733596 + MIR SINE MIR 7 193 -66 2098 246 45 22 chr1 189460068 189460575 -92733089 + LTR40a LTR ERVL 1 519 0 211 288 210 42 chr1 189460687 189461072 -92732592 - L2 LINE L2 -678 2636 2187 282 330 62 23 chr1 189461607 189461783 -92731881 + MIR SINE MIR 20 202 -60 4654 100 53 37 chr1 189461890 189463046 -92730618 - SVA Other Other -955 1384 16 794 152 23 23 chr1 189464676 189464808 -92728856 + FLAM_A SINE Alu 11 142 0 26 0 0 0 chr1 189466895 189466921 -92726743 + AT_rich Low_complexity Low_complexity 1 26 0 251 48 0 48 chr1 189467147 189467189 -92726475 + (CAGAGA)n Simple_repeat Simple_repeat 2 41 0 414 246 85 31 chr1 189467833 189467963 -92725701 - MIR3 SINE MIR -51 157 21 2793 268 66 54 chr1 189468173 189468928 -92724736 + L1MEc LINE L1 77 821 -5575 2384 85 0 3 chr1 189468928 189469222 -92724442 + AluSg SINE Alu 1 293 -17 2793 268 66 54 chr1 189469222 189469265 -92724399 + L1MEc LINE L1 821 862 -5534 738 208 8 23 chr1 189469265 189469385 -92724279 + FLAM_A SINE Alu 1 120 -182 450 108 0 0 chr1 189469385 189469459 -92724205 + (TGGA)n Simple_repeat Simple_repeat 4 77 0 22 35 0 0 chr1 189469468 189469497 -92724167 + AT_rich Low_complexity Low_complexity 1 29 0 2793 268 66 54 chr1 189469497 189469819 -92723845 + L1MEc LINE L1 862 1215 -5181 1590 120 0 5 chr1 189469819 189470036 -92723628 + AluSg/x SINE Alu 92 307 -3 2793 268 66 54 chr1 189470036 189470173 -92723491 + L1MEc LINE L1 1215 1349 -5047 2196 119 0 3 chr1 189470190 189470485 -92723179 + AluSx SINE Alu 2 295 -17 1065 208 38 4 chr1 189470485 189470725 -92722939 + L1MEc LINE L1 1859 2106 -4290 232 118 0 0 chr1 189470750 189470784 -92722880 + L1M3 LINE L1 5818 5851 -332 627 244 75 0 chr1 189470803 189471004 -92722660 + L1MEc LINE L1 2405 2620 -3595 3534 220 54 40 chr1 189471013 189471294 -92722370 + L1MEc LINE L1 2122 2398 -3817 2726 157 39 8 chr1 189471294 189471784 -92721880 + L1MB2 LINE L1 5657 6161 -10 3534 220 54 40 chr1 189471784 189472624 -92721040 + L1MEc LINE L1 2398 3220 -2995 1152 262 58 48 chr1 189472616 189473429 -92720235 - L1MEd LINE L1 -4865 1254 574 * 2107 196 83 5 chr1 189473476 189473909 -92719755 + MLT1D LTR MaLR 3 469 -36 638 167 49 14 chr1 189473909 189474053 -92719611 - HAL1 LINE L1 -874 1633 1485 500 284 40 11 chr1 189474416 189474592 -92719072 - MIR SINE MIR -21 241 61 1597 247 34 56 chr1 189475942 189476496 -92717168 - MLT1H LTR MaLR 0 549 8 2476 64 0 3 chr1 189476682 189476980 -92716684 - AluY SINE Alu -14 297 1 467 265 61 28 chr1 189477210 189477391 -92716273 - MIR SINE MIR 0 262 76 271 255 78 29 chr1 189478436 189478538 -92715126 - L1MC5 LINE L1 -44 7917 7811 727 173 15 30 chr1 189479767 189479900 -92713764 - FLAM_A SINE Alu -2 131 1 939 302 77 14 chr1 189481755 189482186 -92711478 + L2 LINE L2 2856 3313 0 250 212 178 34 chr1 189482196 189482314 -92711350 - L2 LINE L2 0 3272 3138 237 257 46 83 chr1 189482436 189482545 -92711119 - MIR SINE MIR -149 113 9 1323 100 11 6 chr1 189483528 189483708 -92709956 - AluSg/x SINE Alu -21 291 111 358 161 0 0 chr1 189483708 189483764 -92709900 - Alu SINE Alu -246 56 1 2127 139 43 68 chr1 189483941 189484333 -92709331 + MSTA LTR MaLR 1 382 -46 2261 88 3 14 chr1 189484333 189484658 -92709006 - AluSx SINE Alu 0 312 1 2127 139 43 68 chr1 189484658 189484704 -92708960 + MSTA LTR MaLR 382 428 0 535 250 110 13 chr1 189485602 189485838 -92707826 - L1MC5 LINE L1 -47 7914 7656 198 0 0 0 chr1 189485982 189486004 -92707660 + (T)n Simple_repeat Simple_repeat 1 22 0 2243 110 13 0 chr1 189486162 189486462 -92707202 - AluSp SINE Alu -9 304 1 2331 85 3 28 chr1 189487454 189487773 -92705891 + AluSx SINE Alu 1 311 -1 258 217 0 0 chr1 189488770 189488816 -92704848 - MER3 DNA MER1_type 0 209 164 207 0 0 0 chr1 189488817 189488840 -92704824 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2393 96 0 3 chr1 189488901 189489202 -92704462 - AluSx SINE Alu -12 300 1 1650 149 4 50 chr1 189489206 189489487 -92704177 - AluJo SINE Alu -19 293 26 235 56 0 148 chr1 189489487 189489505 -92704159 + AluJo/FRAM SINE Alu 88 107 -195 5091 82 5 1 chr1 189489505 189490163 -92703501 - PABL_A LTR ERV1 0 660 1 235 56 0 148 chr1 189490163 189490198 -92703466 + AluJo/FRAM SINE Alu 107 133 -169 944 193 0 0 chr1 189490204 189490370 -92703294 + FRAM SINE Alu 1 166 0 310 77 0 0 chr1 189490370 189490409 -92703255 - AluJo SINE Alu -261 40 2 785 186 12 19 chr1 189490409 189490570 -92703094 - MER3 DNA MER1_type -49 160 1 1288 171 43 59 chr1 189490881 189491185 -92702479 + AluJo SINE Alu 1 299 -13 1970 108 47 24 chr1 189492168 189492465 -92701199 - AluSx SINE Alu -8 304 1 724 165 8 45 chr1 189492469 189492602 -92701062 - FLAM_C SINE Alu -5 128 1 625 226 124 5 chr1 189492988 189493007 -92700657 - MIR SINE MIR -46 216 201 1651 165 168 11 chr1 189493007 189493377 -92700287 - MSTA LTR MaLR 0 428 1 625 226 124 5 chr1 189493377 189493543 -92700121 - MIR SINE MIR -61 201 9 2262 117 0 0 chr1 189493715 189494013 -92699651 + AluSq SINE Alu 1 298 -15 405 221 127 66 chr1 189494458 189494639 -92699025 - MIR3 SINE MIR -8 200 9 446 148 16 49 chr1 189494694 189494816 -92698848 + C-rich Low_complexity Low_complexity 4 121 0 4809 158 49 9 chr1 189494949 189495826 -92697838 - L1MC1 LINE L1 0 6333 5422 9331 98 23 45 chr1 189496530 189497947 -92695717 - SVA Other Other -1 1385 1 1569 177 7 43 chr1 189497963 189498263 -92695401 - AluSq SINE Alu -24 289 1 381 163 50 0 chr1 189498301 189498381 -92695283 - MIR SINE MIR -80 182 99 640 329 112 11 chr1 189498435 189498791 -92694873 + L3 LINE CR1 958 1349 -228 185 365 0 0 chr1 189498913 189498965 -92694699 + MIR SINE MIR 48 99 -163 220 398 8 25 chr1 189499231 189499349 -92694315 + L2 LINE L2 3124 3239 -33 333 242 61 20 chr1 189499438 189499537 -92694127 - MARNA DNA Mariner -447 139 37 40 73 0 0 chr1 189499952 189500034 -92693630 + AT_rich Low_complexity Low_complexity 1 82 0 232 288 270 12 chr1 189500920 189501083 -92692581 - L2 LINE L2 0 3272 3068 1487 169 104 28 chr1 189501201 189501527 -92692137 + MLT1A1 LTR MaLR 1 351 -14 24 53 0 0 chr1 189502047 189502085 -92691579 + AT_rich Low_complexity Low_complexity 1 38 0 1448 185 109 29 chr1 189502103 189502194 -92691470 + L1MCa LINE L1 2 84 -6342 2437 87 0 0 chr1 189502194 189502494 -92691170 + AluSc SINE Alu 1 300 -9 1448 185 109 29 chr1 189502494 189502715 -92690949 + L1MCa LINE L1 84 339 -6087 * 13154 143 60 35 chr1 189502698 189505318 -92688346 + L1M4c LINE L1 2 2683 -3699 23 0 0 0 chr1 189505324 189505347 -92688317 + AT_rich Low_complexity Low_complexity 1 23 0 768 219 52 0 chr1 189505347 189505557 -92688107 + L1M4c LINE L1 2664 2884 -3498 760 195 0 12 chr1 189505561 189505730 -92687934 + L1MB3 LINE L1 6017 6183 0 2265 86 3 20 chr1 189505745 189506049 -92687615 + AluSx SINE Alu 14 312 0 7940 137 119 18 chr1 189506061 189507152 -92686512 + L1MCa LINE L1 348 1638 -4788 2303 118 0 0 chr1 189507152 189507456 -92686208 + AluSx SINE Alu 1 304 -8 7940 137 119 18 chr1 189507456 189507888 -92685776 + L1MCa LINE L1 1638 2025 -4401 462 162 7 169 chr1 189507893 189507975 -92685689 + MLT1A1 LTR MaLR 498 545 -81 2125 113 0 4 chr1 189507975 189508250 -92685414 + AluSx SINE Alu 6 279 -33 462 162 7 169 chr1 189508250 189508321 -92685343 + MLT1A1 LTR MaLR 545 626 0 390 293 31 37 chr1 189508699 189508890 -92684774 + L1ME4a LINE L1 5931 6120 -1 2276 91 3 7 chr1 189509428 189509726 -92683938 - AluSx SINE Alu -15 297 1 638 203 65 13 chr1 189509830 189509983 -92683681 + MER5A DNA MER1_type 1 161 -28 340 257 104 55 chr1 189509991 189510136 -92683528 - MARNA DNA Mariner -89 497 361 2107 103 45 3 chr1 189510136 189510427 -92683237 - AluSq SINE Alu -10 303 1 2460 76 0 9 chr1 189510437 189510752 -92682912 - AluSp SINE Alu 0 313 2 340 257 104 55 chr1 189510752 189510797 -92682867 - MARNA DNA Mariner -233 353 286 237 200 0 0 chr1 189511301 189511346 -92682318 + MER5A DNA MER1_type 145 189 0 1576 178 21 14 chr1 189511546 189511833 -92681831 + AluJb SINE Alu 2 290 -22 2275 65 11 0 chr1 189514056 189514333 -92679331 + AluSq SINE Alu 24 303 -10 1145 147 16 0 chr1 189514339 189514523 -92679141 + L1PB2 LINE L1 5965 6151 0 2159 118 0 7 chr1 189514927 189515224 -92678440 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr1 189516211 189516232 -92677432 + AT_rich Low_complexity Low_complexity 1 21 0 775 176 23 0 chr1 189516258 189516389 -92677275 + AluJo SINE Alu 2 135 -177 1568 182 10 26 chr1 189516389 189516697 -92676967 + AluJb SINE Alu 1 303 -9 189 321 109 7 chr1 189517199 189517336 -92676328 - MIR3 SINE MIR -53 155 5 210 259 94 94 chr1 189517534 189517704 -92675960 - L2 LINE L2 -50 3263 3094 211 288 125 0 chr1 189517722 189517802 -92675862 - L2 LINE L2 -310 2962 2873 2192 71 40 37 chr1 189518058 189518354 -92675310 - AluY SINE Alu -14 297 1 316 299 11 0 chr1 189518491 189518578 -92675086 + Charlie1b DNA MER1_type 2 89 -434 23 0 0 0 chr1 189518585 189518608 -92675056 + AT_rich Low_complexity Low_complexity 1 23 0 2244 112 0 0 chr1 189518608 189518902 -92674762 - AluSq SINE Alu -19 294 1 364 221 94 65 chr1 189519002 189519304 -92674360 + LTR37A LTR ERV1 73 426 0 * 1658 174 49 61 chr1 189519304 189519568 -92674096 + Charlie1b DNA MER1_type 104 363 -2398 2321 100 0 0 chr1 189519568 189519858 -92673806 + AluSx SINE Alu 1 290 -22 1658 174 49 61 chr1 189519858 189520018 -92673646 + Charlie1b DNA MER1_type 363 523 0 251 271 232 20 chr1 189520399 189520550 -92673114 + MIR SINE MIR 26 208 -54 473 274 51 23 chr1 189520592 189520767 -92672897 - MIR SINE MIR -50 212 33 2893 118 76 5 chr1 189520838 189521272 -92672392 + MER4C LTR ERV1 1 465 0 2047 117 21 7 chr1 189521291 189521582 -92672082 - AluSx SINE Alu -17 295 1 565 91 91 0 chr1 189521612 189521700 -92671964 + MER4A LTR ERV1 3 98 -566 1611 118 31 61 chr1 189521700 189522021 -92671643 + MER4A LTR ERV1 261 630 -34 2152 112 0 14 chr1 189522086 189522382 -92671282 - AluSx SINE Alu -20 292 1 706 173 62 12 chr1 189522596 189522758 -92670906 + MER53 DNA DNA 4 173 -16 225 205 115 49 chr1 189523172 189523294 -92670370 - L1MC5 LINE L1 -46 7915 7786 330 226 97 11 chr1 189523320 189523413 -92670251 - L1ME2 LINE L1 -13 6151 6051 2333 93 3 0 chr1 189524352 189524652 -92669012 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr1 189525919 189525944 -92667720 + AT_rich Low_complexity Low_complexity 1 25 0 284 274 78 20 chr1 189526194 189526296 -92667368 - MER103 DNA DNA -55 111 4 1842 159 14 3 chr1 189526495 189526791 -92666873 + AluSx SINE Alu 1 299 -13 1090 96 0 0 chr1 189527496 189527632 -92666032 + AluSq/x SINE Alu 1 136 -177 2358 105 0 0 chr1 189527632 189527938 -92665726 + AluY SINE Alu 1 306 -5 559 256 110 66 chr1 189528268 189528657 -92665007 + MLT1J2 LTR MaLR 19 447 -3 497 272 24 8 chr1 189528858 189528983 -92664681 - MIR3 SINE MIR -49 159 33 1694 303 84 20 chr1 189529237 189530046 -92663618 + L2 LINE L2 1858 2718 -596 760 252 183 23 chr1 189530048 189530310 -92663354 + MLT1J LTR MaLR 1 304 -207 22 0 0 0 chr1 189530393 189530415 -92663249 + AT_rich Low_complexity Low_complexity 1 22 0 183 323 16 0 chr1 189530472 189530534 -92663130 + L2 LINE L2 2743 2805 -509 22 35 0 0 chr1 189530616 189530645 -92663019 + AT_rich Low_complexity Low_complexity 1 29 0 366 281 0 11 chr1 189530645 189530734 -92662930 + L2 LINE L2 3182 3269 -3 1760 160 3 42 chr1 189530826 189531132 -92662532 + AluJo SINE Alu 1 294 -18 2023 139 3 0 chr1 189531256 189531544 -92662120 - AluY SINE Alu -22 289 1 1920 148 10 7 chr1 189531829 189532127 -92661537 - AluJb SINE Alu -12 300 2 632 258 183 43 chr1 189532181 189532386 -92661278 + L2 LINE L2 2916 3091 -222 1321 191 128 7 chr1 189532386 189532659 -92661005 - AluJo SINE Alu -4 308 3 632 258 183 43 chr1 189532659 189532802 -92660862 + L2 LINE L2 3091 3313 0 1377 171 0 80 chr1 189533075 189533349 -92660315 - AluJo SINE Alu -60 252 1 792 240 127 40 chr1 189533498 189533869 -92659795 + HAL1 LINE L1 2043 2445 -62 252 184 0 0 chr1 189534217 189534266 -92659398 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 335 241 0 69 chr1 189535187 189535303 -92658361 + MER113 DNA MER1_type? 266 373 -148 316 322 57 17 chr1 189535394 189535571 -92658093 + MIR SINE MIR 9 192 -70 2273 87 3 3 chr1 189537819 189538107 -92655557 - AluSq SINE Alu -17 296 9 2191 90 0 21 chr1 189538293 189538610 -92655054 - AluSp SINE Alu 0 311 1 2227 60 67 7 chr1 189538953 189539237 -92654427 - AluSg SINE Alu -9 301 1 219 36 0 0 chr1 189539519 189539547 -92654117 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1995 100 39 7 chr1 189539550 189539830 -92653834 - AluSx SINE Alu -23 289 1 200 200 44 0 chr1 189540003 189540093 -92653571 + (TA)n Simple_repeat Simple_repeat 1 94 0 226 303 83 18 chr1 189540241 189540350 -92653314 - L2 LINE L2 -4 3268 3153 239 340 109 73 chr1 189540428 189540878 -92652786 - L2 LINE L2 -3 3269 2804 396 0 0 0 chr1 189541551 189541595 -92652069 + (TG)n Simple_repeat Simple_repeat 2 45 0 492 218 84 14 chr1 189541695 189541837 -92651827 - L2 LINE L2 -6 3307 3156 779 239 65 94 chr1 189541893 189542061 -92651603 - L1MC4 LINE L1 -63 7979 7808 2038 147 0 3 chr1 189542061 189542373 -92651291 - AluJb SINE Alu -1 311 1 779 239 65 94 chr1 189542373 189542427 -92651237 - L1MC4 LINE L1 -234 7808 7754 2196 89 27 10 chr1 189542427 189542720 -92650944 + AluSg1 SINE Alu 1 298 -11 779 239 65 94 chr1 189542720 189542847 -92650817 - L1MC4 LINE L1 -288 7754 7639 614 214 0 0 chr1 189542847 189542964 -92650700 - L1MB5 LINE L1 0 6174 6058 239 179 107 0 chr1 189542985 189543041 -92650623 - L2 LINE L2 -561 2753 2692 2123 123 0 3 chr1 189543047 189543340 -92650324 + AluSx SINE Alu 1 292 -20 1528 205 26 16 chr1 189544130 189544437 -92649227 + L1MDa LINE L1 3 312 -6228 2409 91 3 0 chr1 189544717 189545024 -92648640 - AluSx SINE Alu -4 308 1 201 74 0 0 chr1 189545715 189545742 -92647922 + (GA)n Simple_repeat Simple_repeat 2 28 0 2174 89 4 0 chr1 189545925 189546206 -92647458 + AluSp SINE Alu 1 282 -31 292 22 44 0 chr1 189546209 189546254 -92647410 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1884 155 30 0 chr1 189546616 189546919 -92646745 + AluJo SINE Alu 1 312 0 212 217 265 48 chr1 189547717 189547800 -92645864 - L2 LINE L2 -3 3269 3169 370 291 12 0 chr1 189547910 189547996 -92645668 - L2 LINE L2 0 3313 3227 774 178 68 31 chr1 189548507 189548698 -92644966 - MIR SINE MIR 0 262 65 2431 95 0 0 chr1 189549104 189549409 -92644255 + AluSg SINE Alu 1 305 -5 368 326 118 41 chr1 189549701 189550143 -92643521 - L2 LINE L2 -622 2692 2217 861 278 24 20 chr1 189550170 189550425 -92643239 - MIR SINE MIR -6 256 1 286 284 0 0 chr1 189550831 189550898 -92642766 + MIR SINE MIR 75 141 -121 3696 130 31 10 chr1 189550899 189551414 -92642250 - MER1A DNA MER1_type -1 526 1 22 35 0 0 chr1 189551983 189552012 -92641652 + AT_rich Low_complexity Low_complexity 1 29 0 275 306 65 107 chr1 189552316 189552626 -92641038 + L2 LINE L2 2838 3133 -139 2091 135 63 30 chr1 189552626 189552989 -92640675 + THE1C LTR MaLR 1 375 0 275 306 65 107 chr1 189552989 189553034 -92640630 + L2 LINE L2 3133 3178 -94 2429 167 44 9 chr1 189553080 189553510 -92640154 + MLT1C LTR MaLR 23 467 0 188 232 107 0 chr1 189553510 189553566 -92640098 + L2 LINE L2 3252 3313 0 2587 141 70 54 chr1 189553977 189554459 -92639205 + LTR2B LTR ERV1 1 490 0 4879 125 53 54 chr1 189554459 189555802 -92637862 + Harlequin LTR ERV1 1 1349 -5547 * 5525 57 19 1 chr1 189555786 189556541 -92637123 + Harlequin LTR ERV1 1807 2574 -4322 * 7368 54 22 1 chr1 189556529 189557431 -92636233 + Harlequin LTR ERV1 3340 4260 -2636 1773 59 12 35 chr1 189557425 189557679 -92635985 + Harlequin LTR ERV1 1570 1817 -5079 * 18650 107 9 9 chr1 189557667 189560313 -92633351 + Harlequin LTR ERV1 4249 6896 0 2793 143 52 25 chr1 189560313 189560790 -92632874 + LTR2B LTR ERV1 1 490 0 263 290 150 0 chr1 189560862 189560962 -92632702 + MER5B DNA MER1_type 1 115 -63 2109 96 6 51 chr1 189561397 189561710 -92631954 + AluSq SINE Alu 1 299 -14 352 152 127 0 chr1 189562253 189562332 -92631332 - L1ME4a LINE L1 -2 6119 6031 754 80 0 72 chr1 189562796 189562921 -92630743 + L1PA4 LINE L1 6040 6155 0 2387 65 14 0 chr1 189562946 189563237 -92630427 + AluSp SINE Alu 1 295 -18 2455 87 0 0 chr1 189563676 189563975 -92629689 + AluSg SINE Alu 1 299 -11 2461 249 92 33 chr1 189564571 189564936 -92628728 + L1ME3A LINE L1 4978 5320 -850 1972 145 3 0 chr1 189564936 189565242 -92628422 + AluSx SINE Alu 1 307 0 2461 249 92 33 chr1 189565242 189565999 -92627665 + L1ME3A LINE L1 5320 6170 0 616 209 44 97 chr1 189566441 189566555 -92627109 - MIR SINE MIR 0 262 143 2342 74 0 10 chr1 189566555 189566853 -92626811 + AluY SINE Alu 1 295 -16 2358 103 0 0 chr1 189566861 189567162 -92626502 + AluSq SINE Alu 1 301 -12 616 209 44 97 chr1 189567162 189567244 -92626420 - MIR SINE MIR -126 136 68 206 260 123 0 chr1 189567426 189567499 -92626165 + L2 LINE L2 3124 3205 -67 321 242 226 60 chr1 189567586 189567989 -92625675 + MLT1H LTR MaLR 3 513 -36 504 328 78 0 chr1 189568020 189568212 -92625452 + MIR SINE MIR 56 262 0 290 294 11 11 chr1 189568213 189568305 -92625359 - L2 LINE L2 0 3272 3181 246 315 222 0 chr1 189568403 189568511 -92625153 - L2 LINE L2 0 3272 3141 338 305 125 8 chr1 189568760 189568888 -92624776 - L2 LINE L2 -452 2862 2720 773 265 16 36 chr1 189569993 189570242 -92623422 + MIR SINE MIR 9 252 -10 379 319 13 6 chr1 189570351 189570508 -92623156 - L1MC5 LINE L1 -81 7880 7723 240 330 117 22 chr1 189571817 189571996 -92621668 + MIR SINE MIR 2 197 -65 508 317 50 0 chr1 189572489 189572669 -92620995 - MIR SINE MIR 0 262 74 212 306 71 0 chr1 189572863 189572948 -92620716 + L2 LINE L2 3182 3272 0 2445 98 0 0 chr1 189573089 189573394 -92620270 + AluSx SINE Alu 1 305 -7 817 202 36 97 chr1 189573621 189573869 -92619795 + MIR SINE MIR 8 240 -22 2260 106 0 0 chr1 189573923 189574224 -92619440 - AluSx SINE Alu -11 301 1 22 0 0 0 chr1 189574825 189574847 -92618817 + AT_rich Low_complexity Low_complexity 1 22 0 8870 153 44 26 chr1 189574847 189575032 -92618632 - L1MA3 LINE L1 0 7724 7544 2160 106 169 5 chr1 189575032 189575400 -92618264 - MSTA LTR MaLR 0 428 1 8870 153 44 26 chr1 189575400 189575581 -92618083 - L1MA3 LINE L1 -180 7544 7368 2483 83 0 0 chr1 189575581 189575882 -92617782 - AluSg SINE Alu -9 301 1 8870 153 44 26 chr1 189575882 189576511 -92617153 - L1MA3 LINE L1 -356 7368 6752 2196 90 7 3 chr1 189576511 189576800 -92616864 - AluSg SINE Alu -20 290 1 8870 153 44 26 chr1 189576800 189576868 -92616796 - L1MA3 LINE L1 -972 6752 6687 7454 55 1 3 chr1 189576868 189578596 -92615068 + L1PA5 LINE L1 4426 6154 0 8870 153 44 26 chr1 189578596 189579481 -92614183 - L1MA3 LINE L1 -1037 6687 5819 2479 58 0 0 chr1 189579481 189579792 -92613872 + AluY SINE Alu 1 311 0 8870 153 44 26 chr1 189579792 189580848 -92612816 - L1MA3 LINE L1 -1905 5819 4644 4935 113 37 4 chr1 189580831 189581580 -92612084 - L1MA3 LINE L1 -5306 2259 1486 * 372 249 35 0 chr1 189581712 189581828 -92611836 - MIR SINE MIR -62 146 30 2356 78 0 0 chr1 189581831 189582146 -92611518 - AluSg SINE Alu 0 315 1 2555 62 0 0 chr1 189582261 189582566 -92611098 + AluY SINE Alu 1 305 -6 1979 136 7 0 chr1 189582850 189583145 -92610519 - AluJb SINE Alu -2 310 14 445 250 165 25 chr1 189583741 189583941 -92609723 + MIR SINE MIR 35 262 0 280 283 76 0 chr1 189584202 189584294 -92609370 - MER94 DNA DNA -32 102 4 1955 132 62 3 chr1 189584317 189584606 -92609058 + AluSx SINE Alu 1 306 -6 502 325 15 25 chr1 189585190 189585390 -92608274 + MIR3 SINE MIR 7 204 -4 538 271 111 38 chr1 189585525 189585787 -92607877 + MER21B LTR ERV1 434 714 -149 2355 81 3 0 chr1 189585789 189586084 -92607580 + AluSc SINE Alu 1 296 -13 252 304 44 59 chr1 189586412 189586547 -92607117 - L2 LINE L2 -935 2379 2247 350 219 0 0 chr1 189586610 189586683 -92606981 - MER96 DNA MER1_type? -93 82 10 516 333 95 16 chr1 189586700 189587015 -92606649 - L2 LINE L2 -1117 2197 1858 358 226 15 68 chr1 189587973 189588106 -92605558 + L1MC4a LINE L1 7300 7425 -383 1647 168 0 39 chr1 189588106 189588391 -92605273 + AluSx SINE Alu 17 290 -22 204 40 0 0 chr1 189588391 189588416 -92605248 + (TA)n Simple_repeat Simple_repeat 1 25 0 1104 217 11 47 chr1 189588458 189588600 -92605064 + L1MD3 LINE L1 7417 7563 -419 2540 32 0 10 chr1 189588600 189588912 -92604752 + AluYa5 SINE Alu 1 309 -2 1104 217 11 47 chr1 189588912 189589171 -92604493 + L1MD3 LINE L1 7563 7982 0 2170 97 0 4 chr1 189589205 189589484 -92604180 + AluSg1 SINE Alu 1 278 -31 2430 72 3 0 chr1 189591426 189591718 -92601946 - AluSq SINE Alu -20 293 1 212 264 69 14 chr1 189591896 189591968 -92601696 + MIR SINE MIR 100 175 -87 246 337 23 0 chr1 189593062 189593164 -92600500 + MIR3 SINE MIR 75 179 -29 2164 104 7 16 chr1 189593859 189594167 -92599497 + AluSx SINE Alu 1 305 -7 2221 115 0 0 chr1 189594168 189594472 -92599192 + AluSx SINE Alu 1 304 -8 2294 103 0 0 chr1 189594969 189595270 -92598394 - AluSg SINE Alu -7 303 3 216 0 0 0 chr1 189596625 189596649 -92597015 + (TG)n Simple_repeat Simple_repeat 1 24 0 1750 186 10 13 chr1 189597393 189597705 -92595959 + AluJb SINE Alu 2 312 0 202 367 94 33 chr1 189597981 189598161 -92595503 + L3 LINE CR1 47 237 -1340 1128 264 89 34 chr1 189598161 189598544 -92595120 - MLT1I LTR MaLR 0 409 6 557 311 246 15 chr1 189598578 189598855 -92594809 + L3 LINE CR1 331 543 -1034 3916 126 50 20 chr1 189598855 189599593 -92594071 + L1MA9 LINE L1 5552 6311 -1 557 311 246 15 chr1 189599593 189599771 -92593893 + L3 LINE CR1 543 891 -686 2573 196 74 32 chr1 189599795 189600332 -92593332 - L1ME3A LINE L1 -9 6161 5587 1569 105 18 9 chr1 189600332 189600560 -92593104 - MER30 DNA MER1_type 0 230 1 2573 196 74 32 chr1 189600560 189600711 -92592953 - L1ME3A LINE L1 -583 5587 5444 1000 217 6 33 chr1 189600715 189601072 -92592592 + LTR2 LTR ERV1 3 449 0 208 320 70 0 chr1 189601241 189601341 -92592323 + L3 LINE CR1 1175 1281 -296 433 175 72 0 chr1 189601741 189601838 -92591826 + MER53 DNA DNA 2 105 -84 304 311 57 0 chr1 189601939 189602045 -92591619 + L3 LINE CR1 1276 1387 -190 4470 54 35 0 chr1 189602095 189602666 -92590998 + LTR10C LTR ERV1 1 591 0 398 277 225 19 chr1 189603023 189603062 -92590602 - MIR SINE MIR -5 257 227 4422 100 30 5 chr1 189603062 189603690 -92589974 + LTR9B LTR ERV1 1 644 0 398 277 225 19 chr1 189603690 189603863 -92589801 - MIR SINE MIR -35 227 1 1914 127 0 0 chr1 189606369 189606637 -92587027 - AluSq SINE Alu -45 268 1 570 258 129 26 chr1 189606653 189606847 -92586817 - MIR SINE MIR -12 250 37 2245 87 0 3 chr1 189607104 189607393 -92586271 - AluSq SINE Alu -25 288 1 257 196 0 20 chr1 189608125 189608176 -92585488 - L2 LINE L2 -13 3259 3210 271 226 0 131 chr1 189608180 189608204 -92585460 - MIR SINE MIR -160 102 76 2195 113 7 0 chr1 189608204 189608505 -92585159 + AluJb SINE Alu 1 303 -9 271 226 0 131 chr1 189608505 189608564 -92585100 - MIR SINE MIR -186 76 30 215 232 159 0 chr1 189608604 189608673 -92584991 - MIR SINE MIR -17 245 166 2460 67 0 0 chr1 189609481 189609779 -92583885 - AluY SINE Alu -13 298 1 21 0 0 0 chr1 189609829 189609850 -92583814 + AT_rich Low_complexity Low_complexity 1 21 0 361 25 12 0 chr1 189610753 189610808 -92582856 + AluY SINE Alu 249 296 -6 450 79 26 0 chr1 189611980 189612056 -92581608 - L1PA16 LINE L1 -20 6146 6069 2217 103 10 0 chr1 189612117 189612408 -92581256 - AluSx SINE Alu -18 294 1 22 35 0 0 chr1 189612594 189612623 -92581041 + AT_rich Low_complexity Low_complexity 1 29 0 246 274 94 19 chr1 189613538 189613644 -92580020 - MIR SINE MIR -108 154 41 3692 164 66 32 chr1 189613720 189614594 -92579070 + L1MB3 LINE L1 5280 6183 0 702 209 111 23 chr1 189614609 189614781 -92578883 - MER5A DNA MER1_type 0 189 3 243 282 90 54 chr1 189614891 189615025 -92578639 + MIR3 SINE MIR 15 151 -70 413 186 10 62 chr1 189615608 189615705 -92577959 + Tigger2 DNA MER2_type 1 92 -2626 362 275 11 0 chr1 189616282 189616373 -92577291 + L1MC4 LINE L1 6612 6703 -1339 307 130 0 0 chr1 189616345 189616391 -92577273 - L1MC4 LINE L1 -1339 6703 6658 * 2487 83 0 6 chr1 189616421 189616733 -92576931 - AluSg SINE Alu 0 310 1 455 167 258 0 chr1 189617431 189617497 -92576167 + MER20 DNA MER1_type 1 49 -170 246 81 0 0 chr1 189617497 189617534 -92576130 + (CTG)n Simple_repeat Simple_repeat 3 39 0 455 167 258 0 chr1 189617534 189617599 -92576065 + MER20 DNA MER1_type 49 166 -53 193 239 174 11 chr1 189617691 189617783 -92575881 + L2 LINE L2 2941 3047 -225 2143 51 0 0 chr1 189618953 189619206 -92574458 + AluY SINE Alu 1 253 -58 2302 86 3 3 chr1 189619963 189620264 -92573400 + AluSp SINE Alu 1 301 -12 489 273 87 17 chr1 189621456 189621628 -92572036 - MIR3 SINE MIR -9 199 16 2078 95 0 15 chr1 189621845 189622118 -92571546 - AluSx SINE Alu -43 269 1 451 282 51 0 chr1 189622128 189622245 -92571419 + L2 LINE L2 3175 3297 -16 30 83 0 0 chr1 189622358 189622430 -92571234 + AT_rich Low_complexity Low_complexity 1 72 0 376 224 41 41 chr1 189623073 189623243 -92570421 - Charlie7 DNA MER1_type -2 2610 2441 326 278 10 10 chr1 189623237 189623334 -92570330 - Charlie7 DNA MER1_type -2507 105 9 * 2376 103 0 0 chr1 189623413 189623724 -92569940 + AluSx SINE Alu 1 311 -1 2254 104 7 0 chr1 189624056 189624353 -92569311 - AluSx SINE Alu -13 299 1 520 278 147 2 chr1 189624747 189624955 -92568709 - MIR SINE MIR -6 256 16 183 182 182 0 chr1 189625962 189626017 -92567647 - MIR SINE MIR -164 98 34 667 115 187 14 chr1 189630156 189630295 -92563369 - L1MA9 LINE L1 -5 6307 6145 206 121 0 0 chr1 189630302 189630335 -92563329 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2072 101 4 4 chr1 189630367 189630645 -92563019 + AluSx SINE Alu 1 278 -34 225 0 0 0 chr1 189630649 189630674 -92562990 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 600 146 0 9 chr1 189631280 189631390 -92562274 - AluJb SINE Alu -29 283 175 22 35 0 0 chr1 189631391 189631420 -92562244 + AT_rich Low_complexity Low_complexity 1 29 0 226 291 191 9 chr1 189632324 189632544 -92561120 + MER112 DNA MER1_type 1 260 0 22 0 0 0 chr1 189632618 189632640 -92561024 + AT_rich Low_complexity Low_complexity 1 22 0 1245 210 159 33 chr1 189632719 189632950 -92560714 - L1ME LINE L1 -508 5656 5455 2106 120 7 0 chr1 189632950 189633250 -92560414 - AluSp SINE Alu -11 302 1 1245 210 159 33 chr1 189633250 189633803 -92559861 - L1ME LINE L1 -709 5455 4973 2404 55 0 10 chr1 189633803 189634095 -92559569 - AluY SINE Alu -22 289 1 1245 210 159 33 chr1 189634095 189634391 -92559273 - L1ME LINE L1 -1191 4973 4382 438 204 9 0 chr1 189634394 189634507 -92559157 - L1MA4A LINE L1 -2 7003 6890 12764 171 48 23 chr1 189634518 189634733 -92558931 - L1MA4A LINE L1 -260 6745 6537 2230 92 0 14 chr1 189634733 189635028 -92558636 - AluY SINE Alu -20 291 1 12764 171 48 23 chr1 189635028 189636342 -92557322 - L1MA4A LINE L1 -468 6537 5257 186 43 0 0 chr1 189636342 189636365 -92557299 + (TG)n Simple_repeat Simple_repeat 2 24 0 2294 89 0 35 chr1 189636371 189636686 -92556978 - AluSc SINE Alu -5 304 1 12764 171 48 23 chr1 189636686 189636842 -92556822 - L1MA4A LINE L1 -1752 5253 5102 2374 94 3 0 chr1 189636842 189637141 -92556523 - AluSx SINE Alu -11 301 2 12764 171 48 23 chr1 189637141 189639027 -92554637 - L1MA4A LINE L1 -1903 5102 3078 699 192 6 26 chr1 189639045 189639201 -92554463 - L1MA4A LINE L1 -4489 2360 2208 281 238 16 0 chr1 189639208 189639271 -92554393 - L1MCc LINE L1 -6188 235 172 2253 117 0 0 chr1 189639539 189639837 -92553827 - AluSx SINE Alu -13 299 2 421 277 89 0 chr1 189639906 189640018 -92553646 - L2 LINE L2 0 3313 3192 1551 251 58 65 chr1 189640132 189640653 -92553011 + LTR40a LTR ERVL 3 519 0 452 251 164 43 chr1 189641877 189642108 -92551556 + L2 LINE L2 3055 3313 0 346 280 187 65 chr1 189642120 189642179 -92551485 - MIR SINE MIR -20 242 192 2170 129 0 0 chr1 189642179 189642482 -92551182 + AluSx SINE Alu 1 303 -9 346 280 187 65 chr1 189642482 189642636 -92551028 - MIR SINE MIR -70 192 3 23 0 0 0 chr1 189642872 189642895 -92550769 + AT_rich Low_complexity Low_complexity 1 23 0 790 274 157 41 chr1 189642957 189643075 -92550589 + L2 LINE L2 1850 1953 -1361 2167 77 9 59 chr1 189643075 189643399 -92550265 - AluY SINE Alu 0 311 4 790 274 157 41 chr1 189643399 189643740 -92549924 + L2 LINE L2 1953 2362 -952 453 344 73 35 chr1 189644044 189644332 -92549332 + L2 LINE L2 2886 3184 -129 1993 126 7 0 chr1 189644499 189644785 -92548879 - AluSx SINE Alu -24 288 1 313 280 0 21 chr1 189644794 189644887 -92548777 - HAL1 LINE L1 -856 1651 1561 1917 120 50 0 chr1 189644892 189645175 -92548489 - AluSx SINE Alu -11 301 5 2500 71 0 0 chr1 189645327 189645637 -92548027 - AluY SINE Alu 0 311 2 481 211 95 20 chr1 189645648 189645687 -92547977 - L1MA10 LINE L1 -2 6332 6294 2361 233 41 35 chr1 189645687 189646394 -92547270 - L1ME1 LINE L1 -44 6191 5481 1154 254 34 27 chr1 189646401 189646666 -92546998 - L1ME1 LINE L1 -1822 4393 4122 1663 157 7 25 chr1 189646666 189646952 -92546712 - AluJo SINE Alu -31 281 1 1154 254 34 27 chr1 189646952 189647096 -92546568 - L1ME1 LINE L1 -2093 4122 3981 * 2284 234 46 19 chr1 189647092 189647925 -92545739 - L1ME1 LINE L1 -2629 3586 2732 227 204 19 0 chr1 189647904 189647958 -92545706 - L1ME1 LINE L1 -6278 118 64 * 4064 175 36 47 chr1 189647999 189649447 -92544217 - L1MB7 LINE L1 -19 6165 4735 5493 170 55 34 chr1 189649611 189651171 -92542493 - L1MC1 LINE L1 -17 6596 5015 1701 117 8 26 chr1 189651177 189651468 -92542196 - AluSg SINE Alu 0 306 21 674 213 18 6 chr1 189651508 189651672 -92541992 - L1MC1 LINE L1 -3295 3131 2966 2175 235 22 25 chr1 189651672 189652118 -92541546 - L1MB7 LINE L1 -1435 4711 4265 2285 72 4 0 chr1 189652118 189652427 -92541237 - AluY SINE Alu 0 310 1 2175 235 22 25 chr1 189652427 189652625 -92541039 - L1MB7 LINE L1 -1881 4265 4068 361 243 39 39 chr1 189652626 189652729 -92540935 - MER46A DNA MER2_type -90 146 44 542 165 12 0 chr1 189652628 189652713 -92540951 + Tigger4(Zombi) DNA MER2_type 1 86 -2645 2656 254 28 11 chr1 189652732 189653552 -92540112 - L1MB7 LINE L1 -3135 3011 2178 * 7930 165 34 49 chr1 189653530 189653560 -92540104 - L1MC1 LINE L1 -3947 2479 2450 2095 120 7 3 chr1 189653560 189653861 -92539803 + AluSx SINE Alu 1 302 -10 2183 95 3 14 chr1 189653865 189654160 -92539504 + AluSq SINE Alu 2 293 -20 7930 165 34 49 chr1 189654160 189654312 -92539352 - L1MC1 LINE L1 -3979 2447 2294 2070 110 40 10 chr1 189654312 189654613 -92539051 - AluSx SINE Alu 0 312 3 7930 165 34 49 chr1 189654613 189656518 -92537146 - L1MC1 LINE L1 -4132 2294 335 2129 102 3 26 chr1 189656518 189656821 -92536843 - AluSx SINE Alu -16 296 1 7930 165 34 49 chr1 189656821 189657151 -92536513 - L1MC1 LINE L1 -6091 335 2 1591 86 36 0 chr1 189657168 189657389 -92536275 - MER30 DNA MER1_type 0 230 2 2232 111 0 25 chr1 189658601 189658917 -92534747 - AluSx SINE Alu -4 308 1 1791 260 80 64 chr1 189659034 189659789 -92533875 - LTR41 LTR ERVL -6 767 1 21 0 0 0 chr1 189659880 189659901 -92533763 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 189660027 189660048 -92533616 + AT_rich Low_complexity Low_complexity 1 21 0 2086 144 0 3 chr1 189660651 189660964 -92532700 - AluSx SINE Alu 0 312 1 1313 147 24 5 chr1 189661256 189661467 -92532197 + AluJo SINE Alu 1 215 -97 22 0 0 0 chr1 189661755 189661777 -92531887 + AT_rich Low_complexity Low_complexity 1 22 0 2175 109 0 3 chr1 189662749 189663043 -92530621 - AluSx SINE Alu -19 293 1 943 278 138 18 chr1 189663253 189663689 -92529975 - L2 LINE L2 -458 2856 2369 1054 253 223 8 chr1 189664049 189664646 -92529018 - L1MC4 LINE L1 -451 7591 6867 * 1707 237 93 8 chr1 189664627 189665100 -92528564 - L1MC4 LINE L1 -1976 5832 5320 252 304 9 27 chr1 189665914 189666026 -92527638 + (TATG)n Simple_repeat Simple_repeat 3 112 0 649 343 107 13 chr1 189666038 189666432 -92527232 + L3 LINE CR1 429 859 -718 1481 208 7 24 chr1 189666437 189666730 -92526934 - AluJo SINE Alu -15 297 10 278 281 67 6 chr1 189666819 189666997 -92526667 - L1MEc LINE L1 -3846 2369 2181 2078 137 0 10 chr1 189667073 189667380 -92526284 + AluSx SINE Alu 1 304 -8 2305 93 10 10 chr1 189667777 189668088 -92525576 - AluSp SINE Alu 0 313 3 223 125 50 0 chr1 189668147 189668187 -92525477 + CT-rich Low_complexity Low_complexity 3 44 0 326 273 78 62 chr1 189668189 189668629 -92525035 - L1MEc LINE L1 -899 1677 1280 1771 219 110 65 chr1 189668667 189669556 -92524108 - L1ME3A LINE L1 -6 6156 5181 1372 156 97 4 chr1 189669583 189669821 -92523843 - AluJo SINE Alu -30 282 23 470 284 89 13 chr1 189669827 189670063 -92523601 - L1ME3A LINE L1 -960 5186 4933 3731 177 72 41 chr1 189670210 189670491 -92523173 - L1MB2 LINE L1 -112 6059 5788 2031 139 0 0 chr1 189670491 189670785 -92522879 + AluSx SINE Alu 1 294 -18 2220 100 0 0 chr1 189670787 189671100 -92522564 + AluSc SINE Alu 1 313 0 3731 177 72 41 chr1 189671100 189671798 -92521866 - L1MB2 LINE L1 -383 5788 5049 2039 95 44 3 chr1 189671798 189672092 -92521572 - AluSx SINE Alu -6 306 1 3731 177 72 41 chr1 189672092 189672238 -92521426 - L1MB2 LINE L1 -1122 5049 4909 5678 154 10 8 chr1 189672257 189673125 -92520539 - L1PA16 LINE L1 -2 6164 5289 1994 119 0 14 chr1 189673125 189673411 -92520253 - AluSc SINE Alu -11 298 17 5678 154 10 8 chr1 189673411 189674190 -92519474 - L1PA16 LINE L1 -877 5289 4513 3361 242 64 17 chr1 189674203 189675128 -92518536 - L1M4 LINE L1 -5559 983 16 24 0 0 0 chr1 189675268 189675292 -92518372 + AT_rich Low_complexity Low_complexity 1 24 0 1929 161 58 14 chr1 189675723 189676071 -92517593 - THE1B LTR MaLR 0 364 2 442 46 31 0 chr1 189676071 189676136 -92517528 + (TG)n Simple_repeat Simple_repeat 1 67 0 2047 201 60 44 chr1 189676139 189676592 -92517072 - MLT1D LTR MaLR -45 460 1 2110 252 101 11 chr1 189676628 189677349 -92516315 - L1ME3A LINE L1 -4 6166 5381 1526 172 64 7 chr1 189677402 189677685 -92515979 - MER1B DNA MER1_type -20 319 22 416 164 77 19 chr1 189677808 189677912 -92515752 - L1MB4 LINE L1 -1 6179 6070 23 78 0 0 chr1 189678719 189678770 -92514894 + AT_rich Low_complexity Low_complexity 1 51 0 1666 166 0 24 chr1 189679056 189679346 -92514318 - AluJo SINE Alu -22 290 8 2089 96 0 4 chr1 189679685 189679989 -92513675 + AluSg SINE Alu 1 303 0 2003 84 80 0 chr1 189680487 189680762 -92512902 + AluSx SINE Alu 1 297 -15 1119 186 24 19 chr1 189681054 189681264 -92512400 + AluJo SINE Alu 87 297 -15 21 0 0 0 chr1 189682019 189682040 -92511624 + AT_rich Low_complexity Low_complexity 1 21 0 1426 163 120 104 chr1 189682435 189682877 -92510787 - MLT1C LTR MaLR 0 467 19 291 28 0 0 chr1 189683139 189683175 -92510489 + (CA)n Simple_repeat Simple_repeat 2 37 0 284 256 16 64 chr1 189683440 189683565 -92510099 - MER20 DNA MER1_type -4 215 97 23 68 0 0 chr1 189684049 189684093 -92509571 + AT_rich Low_complexity Low_complexity 1 44 0 2230 87 3 0 chr1 189684354 189684672 -92508992 + AluSp SINE Alu 1 319 0 26 0 0 0 chr1 189685099 189685125 -92508539 + AT_rich Low_complexity Low_complexity 1 26 0 2304 97 3 0 chr1 189686284 189686583 -92507081 + AluSq SINE Alu 1 300 -13 387 301 24 57 chr1 189686708 189686917 -92506747 - L2 LINE L2 -5 3308 3107 390 256 32 0 chr1 189687060 189687185 -92506479 + CT-rich Low_complexity Low_complexity 4 132 0 1129 272 102 43 chr1 189687274 189688019 -92505645 + L2 LINE L2 2530 3308 -5 1440 171 10 53 chr1 189688536 189688925 -92504739 + L1MB7 LINE L1 5152 5530 -654 15123 122 27 20 chr1 189688971 189691365 -92502299 - Tigger1 DNA MER2_type 0 2418 7 2357 167 71 8 chr1 189691397 189691888 -92501776 + L1MB7 LINE L1 5645 6166 -18 1334 210 32 0 chr1 189691908 189692189 -92501475 + AluJo SINE Alu 4 293 -19 442 300 125 61 chr1 189692314 189692921 -92500743 - L2 LINE L2 -1381 1933 1288 22 0 0 0 chr1 189693498 189693520 -92500144 + AT_rich Low_complexity Low_complexity 1 22 0 879 272 59 24 chr1 189693521 189693811 -92499853 - L1MC/D LINE L1 -2075 5733 5434 21 57 0 0 chr1 189693925 189693960 -92499704 + AT_rich Low_complexity Low_complexity 1 35 0 2022 304 144 51 chr1 189697831 189698849 -92494815 + L2 LINE L2 1218 2421 -893 2150 114 13 0 chr1 189698849 189699155 -92494509 - AluSx SINE Alu -2 310 1 2022 304 144 51 chr1 189699155 189699638 -92494026 + L2 LINE L2 2421 2858 -456 260 135 0 19 chr1 189699712 189699764 -92493900 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 231 114 0 0 chr1 189699769 189699804 -92493860 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 781 162 14 28 chr1 189699815 189699882 -92493782 + CT-rich Low_complexity Low_complexity 1 67 -511 2325 86 0 0 chr1 189699882 189700184 -92493480 - AluY SINE Alu -9 302 1 781 162 14 28 chr1 189700184 189700402 -92493262 + CT-rich Low_complexity Low_complexity 67 578 0 218 186 0 58 chr1 189700418 189700504 -92493160 + CT-rich Low_complexity Low_complexity 3 83 0 22 0 0 0 chr1 189700711 189700733 -92492931 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1 189701608 189701641 -92492023 + AT_rich Low_complexity Low_complexity 1 33 0 2281 86 7 10 chr1 189701998 189702302 -92491362 - AluSc SINE Alu -6 303 1 1932 130 18 0 chr1 189702584 189702887 -92490777 + AluSx SINE Alu 3 310 0 1863 275 161 56 chr1 189704347 189704656 -92489008 + L2 LINE L2 1427 1702 -1612 1597 158 30 4 chr1 189704656 189704921 -92488743 - AluJb SINE Alu -36 276 5 1863 275 161 56 chr1 189704921 189705617 -92488047 + L2 LINE L2 1702 2538 -776 1015 282 25 65 chr1 189705630 189706031 -92487633 + L2 LINE L2 2917 3301 -12 24 32 0 0 chr1 189708215 189708246 -92485418 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr1 189709503 189709540 -92484124 + AT_rich Low_complexity Low_complexity 1 37 0 299 264 92 11 chr1 189709715 189709802 -92483862 + MIR SINE MIR 35 128 -134 2129 130 0 0 chr1 189709934 189710234 -92483430 - AluY SINE Alu -11 300 1 897 272 40 8 chr1 189711003 189711253 -92482411 - MIR SINE MIR 0 262 5 1942 138 0 19 chr1 189714819 189715137 -92478527 + AluJo SINE Alu 1 312 0 2251 100 7 0 chr1 189715410 189715709 -92477955 + AluSx SINE Alu 1 301 -11 323 294 90 52 chr1 189716124 189716335 -92477329 - L2 LINE L2 -819 2495 2277 856 338 69 6 chr1 189716559 189717017 -92476647 + L2 LINE L2 2590 3083 -189 1132 312 114 40 chr1 189717229 189718108 -92475556 - L2 LINE L2 -567 2747 1804 24 0 0 0 chr1 189718586 189718610 -92475054 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 189719162 189719183 -92474481 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr1 189719683 189719733 -92473931 + AT_rich Low_complexity Low_complexity 1 50 0 377 269 198 0 chr1 189720089 189720256 -92473408 - MIR SINE MIR 0 262 63 222 329 12 12 chr1 189720274 189720359 -92473305 - L2 LINE L2 -1 3312 3228 986 221 4 53 chr1 189720435 189720585 -92473079 - MIR SINE MIR -23 239 104 2373 89 0 0 chr1 189720585 189720889 -92472775 + AluY SINE Alu 1 304 -7 986 221 4 53 chr1 189720889 189720982 -92472682 - MIR SINE MIR -158 104 8 248 291 142 79 chr1 189721053 189721566 -92472098 - L2 LINE L2 -162 3110 2463 891 321 58 46 chr1 189721828 189722419 -92471245 - L2 LINE L2 -905 2409 1812 2799 13 0 6 chr1 189724191 189724503 -92469161 - AluYb8 SINE Alu -8 310 1 1572 188 22 0 chr1 189725122 189725394 -92468270 + AluJo SINE Alu 4 281 -31 231 281 103 27 chr1 189725442 189725588 -92468076 + MIR SINE MIR 104 260 -2 28 48 0 0 chr1 189725782 189725824 -92467840 + AT_rich Low_complexity Low_complexity 1 42 0 1899 171 0 3 chr1 189726050 189726354 -92467310 + AluJb SINE Alu 1 303 -9 2201 116 6 0 chr1 189726667 189726978 -92466686 + AluSq SINE Alu 1 313 0 404 181 138 0 chr1 189727991 189728085 -92465579 - FLAM_C SINE Alu 0 133 27 813 211 70 6 chr1 189729482 189729638 -92464026 - MER5A DNA MER1_type -3 186 21 21 0 0 0 chr1 189729672 189729693 -92463971 + AT_rich Low_complexity Low_complexity 1 21 0 474 298 62 21 chr1 189729706 189730079 -92463585 - L1ME4a LINE L1 -123 5998 5611 26 88 0 0 chr1 189730170 189730238 -92463426 + AT_rich Low_complexity Low_complexity 1 68 0 218 221 23 52 chr1 189730474 189730695 -92462969 + (TATAA)n Simple_repeat Simple_repeat 1 214 0 1310 243 224 37 chr1 189730778 189731434 -92462230 - L2 LINE L2 -15 3298 2508 463 279 22 7 chr1 189731923 189732059 -92461605 + MIR SINE MIR 94 231 -31 270 219 50 57 chr1 189732081 189732292 -92461372 - L1P LINE L1 -770 5386 5176 326 326 122 41 chr1 189732295 189732638 -92461026 - L1ME4a LINE L1 -1024 5122 4752 360 0 0 0 chr1 189732781 189732821 -92460843 + (CA)n Simple_repeat Simple_repeat 1 40 0 279 270 0 0 chr1 189734507 189734570 -92459094 + L2 LINE L2 3210 3272 0 1195 181 5 5 chr1 189735242 189735452 -92458212 - MER2 DNA MER2_type -135 210 1 379 286 91 35 chr1 189736997 189737196 -92456468 + MIR SINE MIR 49 258 -4 29 0 0 0 chr1 189738345 189738374 -92455290 + AT_rich Low_complexity Low_complexity 1 29 0 180 176 0 0 chr1 189738579 189738613 -92455051 + (TA)n Simple_repeat Simple_repeat 1 34 0 476 212 66 47 chr1 189739584 189739797 -92453867 - MER58 DNA MER1_type 0 2420 1 1722 142 37 27 chr1 189740130 189740297 -92453367 - AluJo SINE Alu -13 299 126 207 0 0 0 chr1 189740297 189740320 -92453344 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1722 142 37 27 chr1 189740320 189740448 -92453216 - AluJo SINE Alu -186 126 1 2538 65 0 0 chr1 189740533 189740839 -92452825 - AluY SINE Alu -3 308 3 21 0 0 0 chr1 189740843 189740864 -92452800 + AT_rich Low_complexity Low_complexity 1 21 0 1920 156 0 10 chr1 189742762 189743070 -92450594 - AluSx SINE Alu -7 305 1 983 238 82 56 chr1 189744325 189744834 -92448830 - MER68 LTR ERV1 0 562 20 2210 144 100 3 chr1 189745040 189745430 -92448234 - MSTC LTR MaLR 0 428 1 24 32 0 0 chr1 189745538 189745569 -92448095 + AT_rich Low_complexity Low_complexity 1 31 0 1468 93 0 5 chr1 189745706 189745900 -92447764 - AluSg/x SINE Alu -15 295 103 261 0 0 0 chr1 189746218 189746247 -92447417 + (T)n Simple_repeat Simple_repeat 1 29 0 563 199 26 13 chr1 189747499 189747650 -92446014 - MER103 DNA DNA -7 159 7 184 266 188 32 chr1 189747805 189747959 -92445705 - L3b LINE CR1 -192 1391 1214 429 311 88 47 chr1 189748481 189748674 -92444990 - L2 LINE L2 -31 3241 3041 881 275 124 26 chr1 189748922 189749452 -92444212 - L1ME3A LINE L1 -221 5949 5472 2095 108 11 4 chr1 189749452 189749754 -92443910 - AluSx SINE Alu 0 306 3 881 275 124 26 chr1 189749754 189750532 -92443132 - L1ME3A LINE L1 -698 5472 4461 1868 169 0 7 chr1 189750532 189750834 -92442830 - AluJo SINE Alu -12 300 1 881 275 124 26 chr1 189750834 189751017 -92442647 - L1ME3A LINE L1 -1709 4461 4297 1521 170 4 22 chr1 189751096 189751372 -92442292 - AluJo SINE Alu -41 271 1 1957 121 11 0 chr1 189751496 189751760 -92441904 + AluSx SINE Alu 1 267 -45 571 207 78 33 chr1 189752379 189752621 -92441043 - L1ME1 LINE L1 -296 5870 5613 2312 224 42 34 chr1 189752657 189753300 -92440364 + L1ME3A LINE L1 5518 6165 -5 24 0 0 0 chr1 189753555 189753579 -92440085 + AT_rich Low_complexity Low_complexity 1 24 0 1680 60 0 0 chr1 189753797 189753997 -92439667 - AluY SINE Alu -11 300 101 25 31 0 0 chr1 189754462 189754494 -92439170 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr1 189754966 189754986 -92438678 + (T)n Simple_repeat Simple_repeat 1 20 0 398 318 37 0 chr1 189756012 189756119 -92437545 - L2 LINE L2 0 3313 3203 892 132 0 0 chr1 189756204 189756333 -92437331 - FLAM_C SINE Alu -3 130 2 23 0 0 0 chr1 189756446 189756469 -92437195 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 189757236 189757259 -92436405 + AT_rich Low_complexity Low_complexity 1 23 0 201 337 123 93 chr1 189758111 189758476 -92435188 - L2 LINE L2 -1 3271 2896 213 304 0 25 chr1 189758614 189758693 -92434971 + CT-rich Low_complexity Low_complexity 2 78 0 25 31 0 0 chr1 189759379 189759411 -92434253 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 189759428 189759449 -92434215 + AT_rich Low_complexity Low_complexity 1 21 0 244 213 13 93 chr1 189760046 189760121 -92433543 - MIR SINE MIR -146 116 48 374 332 46 25 chr1 189760153 189760349 -92433315 + L2 LINE L2 2757 2956 -358 335 306 8 52 chr1 189761433 189761567 -92432097 - MER5B DNA MER1_type -26 152 25 260 313 20 10 chr1 189761707 189761806 -92431858 + L2 LINE L2 2716 2815 -499 379 134 61 49 chr1 189761989 189762071 -92431593 + L2 LINE L2 2633 2715 -599 675 229 17 74 chr1 189762088 189762208 -92431456 - MER58A DNA MER1_type -175 166 58 1935 122 0 94 chr1 189762208 189762528 -92431136 + AluSx SINE Alu 1 290 -22 675 229 17 74 chr1 189762528 189762582 -92431082 - MER58A DNA MER1_type -283 58 2 631 260 69 132 chr1 189762582 189762908 -92430756 + L2 LINE L2 2698 2962 -351 2398 79 0 3 chr1 189762908 189763212 -92430452 + AluSc SINE Alu 7 309 0 631 260 69 132 chr1 189763212 189763528 -92430136 + L2 LINE L2 2962 3297 -16 1710 77 0 5 chr1 189763865 189764087 -92429577 + AluSc SINE Alu 84 304 -5 24 67 0 0 chr1 189764831 189764876 -92428788 + AT_rich Low_complexity Low_complexity 1 45 0 396 333 91 71 chr1 189765360 189765724 -92427940 - L2 LINE L2 0 3272 2905 373 265 0 12 chr1 189765766 189765849 -92427815 + L2 LINE L2 3199 3280 -33 2266 148 77 5 chr1 189766900 189767304 -92426360 - Tigger2a DNA MER2_type 0 434 2 211 257 73 37 chr1 189768992 189769101 -92424563 + MIR SINE MIR 79 191 -71 406 117 283 0 chr1 189769316 189769420 -92424244 + L1MC1 LINE L1 6199 7783 -2 2281 85 7 0 chr1 189769429 189769722 -92423942 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr1 189770485 189770513 -92423151 + AT_rich Low_complexity Low_complexity 1 28 0 2388 82 3 0 chr1 189771747 189772050 -92421614 - AluSp SINE Alu -9 304 1 264 228 30 127 chr1 189772370 189772567 -92421097 - MIR SINE MIR -36 226 49 203 292 0 15 chr1 189772620 189772685 -92420979 + MIR SINE MIR 181 244 -18 231 356 0 10 chr1 189773851 189773952 -92419712 + L2 LINE L2 2990 3089 -183 395 265 87 65 chr1 189775234 189775419 -92418245 - MIR3 SINE MIR -1 207 19 545 346 39 17 chr1 189776788 189777022 -92416642 + MIR SINE MIR 14 252 -10 221 144 3 0 chr1 189778118 189778158 -92415506 - MIR SINE MIR -63 145 110 246 32 0 0 chr1 189778215 189778246 -92415418 + (TG)n Simple_repeat Simple_repeat 1 31 0 460 241 92 14 chr1 189779457 189779598 -92414066 + MIR SINE MIR 94 245 -17 222 289 40 13 chr1 189779618 189779694 -92413970 - MIR SINE MIR -115 93 16 190 345 60 9 chr1 189779676 189779792 -92413872 + L2 LINE L2 2938 3059 -213 * 373 159 0 0 chr1 189779874 189779937 -92413727 - L1MB8 LINE L1 -9 6169 6107 246 262 16 0 chr1 189780013 189780074 -92413590 + L2 LINE L2 3192 3253 -19 234 0 0 0 chr1 189780080 189780106 -92413558 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 584 335 26 18 chr1 189780896 189781123 -92412541 - MIR SINE MIR -6 256 28 228 290 0 70 chr1 189781181 189781281 -92412383 - MIR SINE MIR -66 196 104 354 213 260 24 chr1 189781873 189782042 -92411622 + HAL1 LINE L1 3 211 -2296 776 285 95 30 chr1 189782302 189782733 -92410931 + HAL1 LINE L1 639 1097 -1410 2283 229 88 15 chr1 189785683 189786361 -92407303 + L1MC4a LINE L1 7081 7808 0 2275 127 3 0 chr1 189786739 189787047 -92406617 + AluSx SINE Alu 1 309 -3 333 253 0 81 chr1 189788537 189788636 -92405028 - L2 LINE L2 -1 3271 3181 486 248 125 16 chr1 189788673 189788845 -92404819 - MIR SINE MIR -62 146 5 563 322 35 5 chr1 189789748 189789947 -92403717 + MIR SINE MIR 20 224 -38 234 285 133 13 chr1 189790037 189790188 -92403476 + MLT1L LTR MaLR 101 269 -346 1934 152 0 32 chr1 189790805 189791120 -92402544 + AluJo SINE Alu 1 305 -7 1058 52 0 0 chr1 189792018 189792153 -92401511 - L1PA4 LINE L1 -3 6152 6018 1038 187 86 0 chr1 189792172 189792370 -92401294 + MER20 DNA MER1_type 5 219 0 469 268 101 42 chr1 189792465 189792633 -92401031 + MIR SINE MIR 69 246 -16 2352 104 13 0 chr1 189792682 189792989 -92400675 - AluSq SINE Alu -2 311 1 361 310 0 0 chr1 189792999 189793086 -92400578 + L2 LINE L2 3182 3268 -4 365 331 64 55 chr1 189793094 189793405 -92400259 + L2 LINE L2 2944 3257 -15 532 272 186 32 chr1 189793705 189794297 -92399367 + L1ME4a LINE L1 5388 6070 -51 201 311 30 9 chr1 189795813 189795900 -92397764 - MIR SINE MIR -41 167 75 401 324 7 15 chr1 189796035 189796171 -92397493 - MER5A DNA MER1_type 0 189 55 399 299 174 14 chr1 189796256 189796400 -92397264 + MER5A DNA MER1_type 14 180 -9 186 331 47 58 chr1 189796811 189796983 -92396681 - L3 LINE CR1 -49 1528 1359 1262 310 34 22 chr1 189796988 189797189 -92396475 - L3 LINE CR1 -407 1170 973 1525 167 17 24 chr1 189797189 189797477 -92396187 + AluJb SINE Alu 1 286 -26 1262 310 34 22 chr1 189797477 189797772 -92395892 - L3 LINE CR1 -604 973 668 328 66 16 33 chr1 189797927 189797988 -92395676 + L1PA16 LINE L1 6107 6166 0 1206 247 22 53 chr1 189798067 189798158 -92395506 + L1MC4a LINE L1 5254 5346 -2462 2579 130 57 5 chr1 189798158 189798565 -92395099 + MSTC LTR MaLR 1 428 0 1206 247 22 53 chr1 189798565 189798840 -92394824 + L1MC4a LINE L1 5346 5604 -2204 2267 158 42 24 chr1 189798840 189799264 -92394400 - MSTB1 LTR MaLR 0 432 1 1206 247 22 53 chr1 189799264 189799385 -92394279 + L1MC4a LINE L1 5604 5727 -2081 472 294 115 64 chr1 189799388 189799701 -92393963 + L1MC4a LINE L1 5974 6302 -1506 443 223 46 15 chr1 189799806 189799936 -92393728 + L1MC4a LINE L1 6476 6609 -1199 236 123 35 35 chr1 189799944 189800001 -92393663 + L1MEd LINE L1 1019 1075 -5044 367 293 84 54 chr1 189800093 189800260 -92393404 + L1MDa LINE L1 13 184 -5935 352 317 38 32 chr1 189800338 189800524 -92393140 + L1MDa LINE L1 283 469 -5650 2284 119 3 0 chr1 189800571 189800874 -92392790 + AluSx SINE Alu 1 304 -8 1762 146 29 11 chr1 189801108 189801383 -92392281 + AluJb SINE Alu 1 280 -32 653 64 21 0 chr1 189801391 189801485 -92392179 + (GAAAA)n Simple_repeat Simple_repeat 2 97 0 280 271 35 82 chr1 189801486 189801528 -92392136 + L1MDa LINE L1 889 931 -5188 2359 111 0 0 chr1 189801528 189801834 -92391830 + AluSq SINE Alu 1 306 -7 280 271 35 82 chr1 189801834 189802046 -92391618 + L1MDa LINE L1 931 1131 -4988 939 281 139 44 chr1 189802079 189802627 -92391037 + MLT1L LTR MaLR 5 604 -11 483 303 242 22 chr1 189802641 189802980 -92390684 + L1MDa LINE L1 1167 1576 -914 2612 68 0 0 chr1 189803085 189803392 -92390272 + AluY SINE Alu 1 307 -4 2155 110 3 0 chr1 189803462 189803744 -92389920 + AluSx SINE Alu 1 283 -29 436 315 135 14 chr1 189804201 189804458 -92389206 - MARNA DNA Mariner -44 542 229 2720 122 21 5 chr1 189804458 189804884 -92388780 + L1PA13 LINE L1 5731 6163 0 436 315 135 14 chr1 189804884 189804982 -92388682 - MARNA DNA Mariner -357 229 144 614 260 101 62 chr1 189805153 189805187 -92388477 + MIR SINE MIR 1 32 -230 1872 133 89 0 chr1 189805187 189805457 -92388207 + AluSg SINE Alu 1 294 -16 614 260 101 62 chr1 189805457 189805649 -92388015 + MIR SINE MIR 32 236 -26 2611 44 0 7 chr1 189806665 189806963 -92386701 - AluY SINE Alu -15 296 1 184 302 83 10 chr1 189808206 189808281 -92385383 - MIR SINE MIR -57 205 124 1251 217 20 4 chr1 189808281 189808525 -92385139 + MIR SINE MIR 2 249 -13 243 159 23 0 chr1 189808526 189808570 -92385094 - MIR SINE MIR -73 135 91 1078 224 0 11 chr1 189808947 189809219 -92384445 + L1M4 LINE L1 5067 5335 -811 * 1227 183 48 45 chr1 189809217 189809506 -92384158 + L1PB4 LINE L1 5867 6156 0 972 124 0 0 chr1 189809511 189809640 -92384024 + AluSp/q SINE Alu 170 298 -15 2620 193 28 102 chr1 189809658 189810532 -92383132 + L1MA9 LINE L1 5320 6128 -184 791 139 69 14 chr1 189810535 189810679 -92382985 + THE1C LTR MaLR 1 152 -223 5335 104 20 8 chr1 189810682 189811478 -92382186 + THE1C-int LTR MaLR 775 1580 0 2155 121 49 22 chr1 189811478 189811843 -92381821 + THE1C LTR MaLR 1 375 0 274 91 0 0 chr1 189811843 189811887 -92381777 + L1MB2 LINE L1 6127 6170 -1 348 208 14 14 chr1 189811985 189812057 -92381607 - MIR3 SINE MIR -19 189 118 180 288 50 62 chr1 189812016 189812096 -92381568 - L3 LINE CR1 -1170 407 329 * 2177 276 124 15 chr1 189812924 189813878 -92379786 + L2 LINE L2 2253 3313 0 243 227 61 0 chr1 189813942 189814008 -92379656 + MLT1L LTR MaLR 2 71 -544 1692 178 3 44 chr1 189814052 189814350 -92379314 + AluJo SINE Alu 3 288 -24 227 73 49 0 chr1 189814353 189814394 -92379270 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 417 39 0 0 chr1 189814415 189814466 -92379198 + (CA)n Simple_repeat Simple_repeat 1 51 0 222 308 140 19 chr1 189815381 189815488 -92378176 - MIR3 SINE MIR -12 196 77 1620 179 182 0 chr1 189815560 189815917 -92377747 + MSTB LTR MaLR 3 424 -2 2342 93 7 0 chr1 189816511 189816802 -92376862 - AluSg SINE Alu -17 293 1 1910 172 7 7 chr1 189817337 189817640 -92376024 - AluJo SINE Alu -9 303 1 235 357 117 24 chr1 189817806 189818019 -92375645 + MIR SINE MIR 20 252 -10 2107 138 3 0 chr1 189818089 189818386 -92375278 + AluSx SINE Alu 1 298 -14 1820 110 170 25 chr1 189818420 189818738 -92374926 - THE1B LTR MaLR 0 364 1 997 133 84 0 chr1 189819216 189819382 -92374282 + MER20 DNA MER1_type 40 219 0 22 0 0 0 chr1 189819591 189819613 -92374051 + AT_rich Low_complexity Low_complexity 1 22 0 973 262 148 30 chr1 189819823 189820509 -92373155 - L2 LINE L2 -11 3302 2542 444 250 125 35 chr1 189820533 189820677 -92372987 - MIR3 SINE MIR -18 190 34 367 295 143 19 chr1 189820798 189821056 -92372608 + L2 LINE L2 1880 2169 -1145 405 265 46 13 chr1 189821365 189821516 -92372148 + MLT1K LTR MaLR 432 587 -1 442 319 26 49 chr1 189821546 189821812 -92371852 + L2 LINE L2 2213 2472 -842 207 383 45 13 chr1 189822224 189822378 -92371286 + L2 LINE L2 2866 3024 -248 21 0 0 0 chr1 189822465 189822486 -92371178 + AT_rich Low_complexity Low_complexity 1 21 0 572 270 124 33 chr1 189822515 189822789 -92370875 + L1MC4a LINE L1 5040 5338 -808 2303 102 0 0 chr1 189822869 189823163 -92370501 + AluSx SINE Alu 1 294 -18 2645 49 0 3 chr1 189823192 189823500 -92370164 + AluY SINE Alu 1 307 -4 2472 85 0 13 chr1 189823615 189823931 -92369733 - AluSq SINE Alu -1 312 1 425 275 104 35 chr1 189824215 189824502 -92369162 + L1MC4a LINE L1 5600 5906 -1902 850 177 0 0 chr1 189824516 189824646 -92369018 - FLAM_A SINE Alu -3 130 1 311 232 110 0 chr1 189824963 189825045 -92368619 - MIR SINE MIR -155 107 17 380 184 192 20 chr1 189826110 189826275 -92367389 + MIR SINE MIR 38 228 -34 26 30 0 0 chr1 189827585 189827618 -92366046 + GC_rich Low_complexity Low_complexity 1 33 0 216 250 24 0 chr1 189827631 189827715 -92365949 + (CCG)n Simple_repeat Simple_repeat 3 88 0 205 173 13 13 chr1 189828237 189828312 -92365352 + (CCCCG)n Simple_repeat Simple_repeat 5 79 0 323 264 66 8 chr1 189829507 189829628 -92364036 + MIR SINE MIR 79 206 -56 23 54 0 0 chr1 189830304 189830341 -92363323 + AT_rich Low_complexity Low_complexity 1 37 0 349 298 60 48 chr1 189830393 189830501 -92363163 + L2 LINE L2 2944 3049 -264 787 149 0 0 chr1 189830501 189830615 -92363049 - FLAM_C SINE Alu -19 114 1 349 298 60 48 chr1 189830615 189830758 -92362906 + L2 LINE L2 3049 3198 -115 1480 261 126 14 chr1 189830920 189831422 -92362242 + MER20B DNA MER1_type 38 595 -188 1777 138 0 0 chr1 189831423 189831670 -92361994 + AluSx SINE Alu 1 247 -65 1187 192 62 71 chr1 189831670 189832009 -92361655 + MER21A LTR ERV1 513 848 -83 638 231 139 44 chr1 189832125 189832306 -92361358 + L1MC4a LINE L1 5711 5873 -1935 2179 115 3 3 chr1 189832306 189832602 -92361062 - AluSx SINE Alu -16 296 1 638 231 139 44 chr1 189832602 189832736 -92360928 + L1MC4a LINE L1 5873 6056 -1752 346 130 19 0 chr1 189832894 189832948 -92360716 - MLT1E2 LTR MaLR -2 622 568 546 230 0 0 chr1 189832954 189833054 -92360610 - FLAM_A SINE Alu -42 100 1 1851 232 99 14 chr1 189833056 189833560 -92360104 - MLT1E2 LTR MaLR -57 569 23 841 174 0 0 chr1 189833605 189833737 -92359927 + FLAM_C SINE Alu 1 132 -1 2208 107 0 20 chr1 189833773 189834071 -92359593 + AluSx SINE Alu 1 292 -20 2433 63 0 10 chr1 189834238 189834537 -92359127 + AluY SINE Alu 1 296 -15 1622 220 40 83 chr1 189834710 189834991 -92358673 + L1MC5 LINE L1 6652 6944 -1042 756 176 32 0 chr1 189834991 189835116 -92358548 + FLAM_C SINE Alu 2 130 -3 1622 220 40 83 chr1 189835116 189835139 -92358525 + L1MC5 LINE L1 6944 6966 -1020 2298 152 20 50 chr1 189835139 189835580 -92358084 + MSTC LTR MaLR 1 428 0 1622 220 40 83 chr1 189835580 189835911 -92357753 + L1MC5 LINE L1 6966 7258 -728 539 172 0 21 chr1 189837343 189837488 -92356176 + G-rich Low_complexity Low_complexity 4 145 0 237 294 0 15 chr1 189837491 189837559 -92356105 + GA-rich Low_complexity Low_complexity 3 69 0 2175 89 34 0 chr1 189838145 189838438 -92355226 + AluSp SINE Alu 1 303 -10 2070 112 0 24 chr1 189838446 189838742 -92354922 + AluSx SINE Alu 1 289 -23 401 265 112 40 chr1 189838871 189839013 -92354651 + L1MC/D LINE L1 5519 5649 -696 2475 47 23 7 chr1 189839013 189839313 -92354351 + AluY SINE Alu 1 305 -6 401 265 112 40 chr1 189839313 189839369 -92354295 + L1MC/D LINE L1 5649 5700 -645 1695 128 4 0 chr1 189839369 189839603 -92354061 + AluJb SINE Alu 1 235 -77 401 265 112 40 chr1 189839603 189839744 -92353920 + L1MC/D LINE L1 5700 5886 -459 253 210 37 0 chr1 189840016 189840097 -92353567 + (TATAA)n Simple_repeat Simple_repeat 4 87 0 434 319 70 13 chr1 189840367 189840524 -92353140 + MIR SINE MIR 5 170 -92 308 247 93 0 chr1 189840616 189840713 -92352951 - L1MC4 LINE L1 -1323 6719 6614 1573 195 22 0 chr1 189841268 189841545 -92352119 + AluJo SINE Alu 1 283 -29 195 162 0 0 chr1 189841547 189841584 -92352080 + GA-rich Low_complexity Low_complexity 4 40 0 390 209 23 70 chr1 189841644 189841773 -92351891 + MIR SINE MIR 71 193 -69 255 225 270 0 chr1 189842033 189842122 -92351542 - L2 LINE L2 -5 3308 3196 2145 111 3 40 chr1 189842152 189842476 -92351188 - AluSx SINE Alu 0 312 1 2259 77 3 0 chr1 189843893 189844180 -92349484 + AluY SINE Alu 17 304 -7 2465 64 3 0 chr1 189844466 189844763 -92348901 + AluY SINE Alu 1 298 -13 2273 94 17 0 chr1 189844870 189845168 -92348496 + AluSx SINE Alu 1 303 -9 14182 183 40 65 chr1 189845729 189845946 -92347718 - L1MA5A LINE L1 -5 6934 6713 2410 120 120 0 chr1 189845946 189846328 -92347336 - MSTA LTR MaLR 0 428 1 14182 183 40 65 chr1 189846328 189846632 -92347032 - L1MA5A LINE L1 -226 6713 6403 2001 122 52 3 chr1 189846632 189846919 -92346745 - AluSx SINE Alu -11 301 1 14182 183 40 65 chr1 189846919 189847213 -92346451 - L1MA5A LINE L1 -536 6403 6103 195 42 0 0 chr1 189847213 189847237 -92346427 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 14182 183 40 65 chr1 189847237 189847944 -92345720 - L1MA5A LINE L1 -836 6103 5380 378 155 6 18 chr1 189847944 189848026 -92345638 - Alu SINE Alu -1 300 234 268 132 0 0 chr1 189848001 189848039 -92345625 - Alu SINE Alu -265 38 1 * 14182 183 40 65 chr1 189848039 189848610 -92345054 - L1MA5A LINE L1 -1572 5367 4783 346 121 0 17 chr1 189848610 189848668 -92344996 - HY3 scRNA scRNA -2 99 43 14182 183 40 65 chr1 189848668 189849723 -92343941 - L1MA5A LINE L1 -2156 4783 3704 846 163 0 0 chr1 189849723 189849852 -92343812 + FLAM_C SINE Alu 5 133 0 14182 183 40 65 chr1 189849852 189850141 -92343523 - L1MA5A LINE L1 -3235 3704 3409 2619 64 0 0 chr1 189850141 189850452 -92343212 - AluY SINE Alu 0 311 1 14182 183 40 65 chr1 189850452 189853173 -92340491 - L1MA5A LINE L1 -3530 3409 129 247 250 14 0 chr1 189853218 189853290 -92340374 - L1MA5A LINE L1 -6588 201 129 277 236 14 0 chr1 189853296 189853368 -92340296 - L1MA5A LINE L1 -6588 201 129 277 236 14 0 chr1 189853374 189853446 -92340218 - L1MA5A LINE L1 -6588 201 129 926 199 42 0 chr1 189853452 189853618 -92340046 - L1MA5A LINE L1 -6588 201 29 1986 150 3 0 chr1 189854381 189854681 -92338983 - AluSx SINE Alu -11 301 1 1545 199 21 7 chr1 189854978 189855269 -92338395 + AluJb SINE Alu 6 300 -12 1176 144 0 0 chr1 189855713 189855887 -92337777 - FRAM SINE Alu -8 168 1 353 330 70 5 chr1 189856001 189856186 -92337478 - L2 LINE L2 -605 2709 2513 340 308 129 34 chr1 189856747 189857104 -92336560 + L2 LINE L2 334 724 -2590 228 306 0 0 chr1 189857318 189857380 -92336284 + MIR SINE MIR 201 262 0 416 262 16 78 chr1 189857594 189857785 -92335879 - MER5A DNA MER1_type -7 182 4 503 254 99 22 chr1 189857825 189858057 -92335607 - MIR SINE MIR 0 262 13 375 74 0 0 chr1 189858073 189858119 -92335545 - MLT2A1 LTR ERVL 0 453 405 261 0 0 0 chr1 189858119 189858148 -92335516 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 189 0 0 chr1 189858184 189858237 -92335427 + (TA)n Simple_repeat Simple_repeat 1 53 0 2896 72 80 10 chr1 189858237 189858638 -92335026 - MLT2A1 LTR ERVL -15 429 1 1617 132 24 108 chr1 189858657 189858990 -92334674 - AluYb8 SINE Alu -5 313 9 204 158 0 0 chr1 189859114 189859152 -92334512 + CT-rich Low_complexity Low_complexity 5 42 0 1469 91 39 43 chr1 189859755 189859986 -92333678 - MER30 DNA MER1_type 0 230 1 1178 80 0 25 chr1 189860120 189860282 -92333382 - AluY SINE Alu -10 301 144 2127 108 0 41 chr1 189860419 189860733 -92332931 - AluSx SINE Alu -11 301 1 470 96 14 0 chr1 189860786 189860859 -92332805 + (TA)n Simple_repeat Simple_repeat 2 75 0 2401 96 0 3 chr1 189861448 189861750 -92331914 - AluSx SINE Alu -11 301 1 237 237 17 17 chr1 189861968 189862027 -92331637 + MLT1K LTR MaLR 191 249 -339 236 267 0 0 chr1 189862368 189862428 -92331236 + MLT1K LTR MaLR 525 584 -4 2065 125 3 22 chr1 189862620 189862932 -92330732 - AluSg SINE Alu -4 306 1 1735 160 20 29 chr1 189863249 189863555 -92330109 + AluJo SINE Alu 1 303 -9 534 293 30 6 chr1 189864244 189864411 -92329253 + L3 LINE CR1 1269 1439 -138 739 271 55 103 chr1 189864520 189864727 -92328937 + L2 LINE L2 2850 3065 -248 2189 87 0 0 chr1 189864727 189865004 -92328660 - AluSg SINE Alu -6 304 28 739 271 55 103 chr1 189865004 189865283 -92328381 + L2 LINE L2 3065 3313 0 23 0 0 0 chr1 189865658 189865681 -92327983 + AT_rich Low_complexity Low_complexity 1 23 0 4894 99 28 28 chr1 189865925 189865983 -92327681 + L1MA3 LINE L1 5550 5607 -698 1717 157 13 44 chr1 189865983 189866301 -92327363 + AluJo SINE Alu 1 308 -4 4894 99 28 28 chr1 189866301 189866489 -92327175 + L1MA3 LINE L1 5607 5794 -511 2551 68 0 10 chr1 189866489 189866799 -92326865 + AluSg SINE Alu 1 307 -3 4894 99 28 28 chr1 189866799 189867139 -92326525 + L1MA3 LINE L1 5794 6140 -165 2279 80 0 0 chr1 189867139 189867413 -92326251 + AluSg SINE Alu 19 292 -18 4894 99 28 28 chr1 189867413 189867580 -92326084 + L1MA3 LINE L1 6139 6305 0 24 32 0 0 chr1 189867580 189867611 -92326053 + AT_rich Low_complexity Low_complexity 1 31 0 1321 107 48 79 chr1 189867630 189867826 -92325838 + MER49 LTR ERV1 51 252 -671 2429 92 0 0 chr1 189867826 189868131 -92325533 + AluSg SINE Alu 1 305 -5 1321 107 48 79 chr1 189868131 189868142 -92325522 + MER49 LTR ERV1 252 262 -661 2249 90 0 0 chr1 189868142 189868451 -92325213 + AluSg SINE Alu 1 309 0 1321 107 48 79 chr1 189868451 189868493 -92325171 + MER49 LTR ERV1 262 294 -629 431 144 41 28 chr1 189868479 189868593 -92325071 + MER4E LTR ERV1 62 284 -588 * 1576 192 30 57 chr1 189868589 189868649 -92325015 + MER4D LTR ERV1 544 604 -299 2018 141 0 0 chr1 189868649 189868961 -92324703 - AluSx SINE Alu 0 312 1 1399 203 42 3 chr1 189868965 189869251 -92324413 - AluJo SINE Alu -15 297 1 1576 192 30 57 chr1 189869251 189869554 -92324110 + MER4D LTR ERV1 607 903 0 202 188 87 87 chr1 189869555 189869624 -92324040 - MIR SINE MIR -57 151 83 222 250 155 12 chr1 189870796 189870880 -92322784 - L2 LINE L2 -41 3231 3136 329 325 177 25 chr1 189871145 189871869 -92321795 - L2 LINE L2 -400 2914 2081 227 184 202 37 chr1 189871936 189872045 -92321619 - L1ME4a LINE L1 -31 6090 5964 1042 98 0 0 chr1 189872071 189872204 -92321460 - AluSp SINE Alu -180 133 1 1370 120 0 0 chr1 189872213 189872404 -92321260 - AluSg/x SINE Alu -2 310 120 23 0 0 0 chr1 189872404 189872427 -92321237 + AT_rich Low_complexity Low_complexity 1 23 0 2289 96 10 13 chr1 189872439 189872752 -92320912 - AluSx SINE Alu 0 312 1 411 47 203 0 chr1 189872785 189872849 -92320815 + MADE1 DNA Mariner 4 80 0 25 0 0 0 chr1 189872852 189872877 -92320787 + AT_rich Low_complexity Low_complexity 1 25 0 856 230 182 56 chr1 189872878 189873019 -92320645 + Charlie2a DNA MER1_type 1 123 -2659 2033 116 0 48 chr1 189873019 189873329 -92320335 + AluSx SINE Alu 1 295 -17 856 230 182 56 chr1 189873329 189873582 -92320082 + Charlie2a DNA MER1_type 123 445 -2337 2432 86 0 0 chr1 189873584 189873876 -92319788 + AluSx SINE Alu 1 292 -20 997 186 103 8 chr1 189873910 189874173 -92319491 + Charlie2a DNA MER1_type 728 1015 -1847 432 303 52 29 chr1 189874292 189874599 -92319065 - L1ME4a LINE L1 -200 5921 5608 211 250 100 0 chr1 189876551 189876651 -92317013 + MIR SINE MIR 86 195 -67 2347 91 3 0 chr1 189876731 189877028 -92316636 + AluSg SINE Alu 1 298 -12 2542 84 0 0 chr1 189877035 189877344 -92316320 + AluSg SINE Alu 1 309 -1 2139 145 0 0 chr1 189877454 189877764 -92315900 + AluSx SINE Alu 1 310 -2 773 127 5 4 chr1 189877882 189878085 -92315579 + AluSx SINE Alu 3 292 -18 451 172 147 17 chr1 189878283 189878399 -92315265 - L2 LINE L2 0 3313 3183 255 266 93 50 chr1 189878766 189878905 -92314759 + MIR SINE MIR 12 156 -106 2002 132 18 0 chr1 189878935 189879216 -92314448 + AluJb SINE Alu 1 286 -26 258 250 0 0 chr1 189879489 189879549 -92314115 - L1MEd LINE L1 -5472 647 588 1480 204 70 6 chr1 189879567 189879880 -92313784 - MER58B DNA MER1_type 0 341 9 2038 140 3 7 chr1 189879938 189880238 -92313426 + AluSx SINE Alu 1 299 -13 2306 105 3 0 chr1 189880589 189880885 -92312779 - AluSq SINE Alu -16 297 1 29 0 0 0 chr1 189882746 189882775 -92310889 + AT_rich Low_complexity Low_complexity 1 29 0 2328 61 44 3 chr1 189882830 189883124 -92310540 + AluY SINE Alu 1 306 -5 1137 33 13 53 chr1 189883447 189883621 -92310043 + AluY SINE Alu 141 308 0 2276 37 48 0 chr1 189883857 189884158 -92309506 + AluY SINE Alu 1 314 0 677 130 0 0 chr1 189884313 189884413 -92309251 + FRAM SINE Alu 32 131 -45 37 52 0 0 chr1 189884413 189884471 -92309193 + AT_rich Low_complexity Low_complexity 1 58 0 1833 268 128 6 chr1 189885009 189885635 -92308029 - MER20B DNA MER1_type -65 718 17 682 360 76 15 chr1 189886013 189886355 -92307309 - L2 LINE L2 -5 3267 2905 1766 164 7 4 chr1 189886829 189887109 -92306555 - AluJb SINE Alu -26 286 6 27 29 0 0 chr1 189887731 189887765 -92305899 + AT_rich Low_complexity Low_complexity 1 34 0 1611 120 124 22 chr1 189888272 189888546 -92305118 + AluSg SINE Alu 1 302 -8 248 245 20 0 chr1 189888548 189888597 -92305067 - MIR SINE MIR -165 97 48 2014 110 3 44 chr1 189888752 189889069 -92304595 - AluSx SINE Alu -8 304 1 358 259 41 119 chr1 189889070 189889413 -92304251 + L1ME4a LINE L1 5603 5918 -203 302 333 61 0 chr1 189890409 189890523 -92303141 - MIR3 SINE MIR -21 187 67 22 0 0 0 chr1 189891843 189891865 -92301799 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 189892856 189892881 -92300783 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 0 0 0 chr1 189893011 189893047 -92300617 + (TG)n Simple_repeat Simple_repeat 2 37 0 3280 266 104 53 chr1 189893862 189895079 -92298585 + L1MCc LINE L1 17 1171 -5467 2197 154 71 17 chr1 189895079 189895299 -92298365 - MSTB1 LTR MaLR 0 432 225 2223 106 0 0 chr1 189895299 189895620 -92298044 - AluSx SINE Alu 0 321 1 2197 154 71 17 chr1 189895620 189895807 -92297857 - MSTB1 LTR MaLR -207 225 1 3280 266 104 53 chr1 189895807 189896078 -92297586 + L1MCc LINE L1 1171 1427 -5211 2172 124 0 3 chr1 189896078 189896376 -92297288 + AluSx SINE Alu 1 297 -15 3280 266 104 53 chr1 189896376 189896531 -92297133 + L1MCc LINE L1 1427 1744 -4894 1823 142 108 9 chr1 189896550 189896874 -92296790 - Tigger1 DNA MER2_type 0 2418 2063 2402 93 3 0 chr1 189896875 189897175 -92296489 + AluSp SINE Alu 1 301 -12 5445 99 31 17 chr1 189897180 189897989 -92295675 - Tigger1 DNA MER2_type -465 1953 1134 1656 111 67 0 chr1 189897986 189898239 -92295425 - Tigger1 DNA MER2_type -1736 682 413 * 311 60 20 0 chr1 189898374 189898424 -92295240 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 11003 37 9 79 chr1 189898424 189899897 -92293767 - SVA Other Other -17 1369 1 1420 158 8 4 chr1 189899897 189900131 -92293533 - Tigger1 DNA MER2_type -1990 428 194 2590 65 0 0 chr1 189900247 189900555 -92293109 + AluSc SINE Alu 1 308 -1 296 280 11 32 chr1 189900558 189900651 -92293013 + L1MCc LINE L1 2008 2098 -5024 289 262 14 35 chr1 189900660 189900805 -92292859 + L1MCc LINE L1 1956 2097 -4844 3884 166 18 18 chr1 189900809 189901098 -92292566 + L1MCa LINE L1 41 329 -6097 2160 145 3 0 chr1 189901098 189901409 -92292255 + AluSx SINE Alu 1 312 0 3884 166 18 18 chr1 189901409 189901789 -92291875 + L1MCa LINE L1 328 710 -5716 2250 93 41 0 chr1 189902224 189902515 -92291149 + AluSg SINE Alu 2 304 -6 3035 146 24 39 chr1 189902549 189903140 -92290524 + L1MCa LINE L1 689 1270 -5156 2372 107 0 0 chr1 189903140 189903450 -92290214 + AluSx SINE Alu 1 310 -2 675 125 0 0 chr1 189903487 189903583 -92290081 + AluSg/x SINE Alu 209 304 -6 1899 139 38 35 chr1 189903583 189904125 -92289539 + L1MCa LINE L1 1262 1895 -4531 635 39 26 58 chr1 189904125 189904279 -92289385 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 298 297 0 0 chr1 189904289 189904363 -92289301 + (CCTA)n Simple_repeat Simple_repeat 2 75 0 2037 217 4 59 chr1 189904363 189904852 -92288812 - MLT2B1 LTR ERVL -58 462 1 821 237 71 0 chr1 189904852 189905076 -92288588 + L1ME1 LINE L1 5922 6161 -5 1652 169 4 4 chr1 189905130 189905402 -92288262 + AluJo SINE Alu 1 272 -40 25 0 0 0 chr1 189905413 189905438 -92288226 + AT_rich Low_complexity Low_complexity 1 25 0 891 318 62 52 chr1 189905620 189906158 -92287506 - L2 LINE L2 -470 2844 2296 2303 119 3 0 chr1 189906158 189906469 -92287195 - AluSx SINE Alu 0 312 1 891 318 62 52 chr1 189906469 189906623 -92287041 - L2 LINE L2 -1018 2296 2145 231 183 0 0 chr1 189907048 189907074 -92286590 + A-rich Low_complexity Low_complexity 1 26 -34 2454 74 0 6 chr1 189907074 189907386 -92286278 + AluY SINE Alu 1 310 -1 231 183 0 0 chr1 189907386 189907419 -92286245 + A-rich Low_complexity Low_complexity 25 60 0 303 291 93 54 chr1 189907469 189907643 -92286021 - L2 LINE L2 -1232 2082 1893 1938 158 0 10 chr1 189907643 189907946 -92285718 - AluJb SINE Alu -12 300 1 303 291 93 54 chr1 189907946 189908029 -92285635 - L2 LINE L2 -1421 1893 1815 2081 128 42 0 chr1 189908473 189908762 -92284902 - AluSx SINE Alu -11 301 1 1856 159 0 10 chr1 189908762 189909064 -92284600 - AluJo SINE Alu -13 299 1 3126 161 56 13 chr1 189909138 189909747 -92283917 + LTR24C LTR ERV1 1 635 0 626 212 8 8 chr1 189909773 189909891 -92283773 + FLAM_C SINE Alu 1 118 -25 180 0 0 0 chr1 189909891 189909911 -92283753 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1812 167 104 19 chr1 189909957 189910322 -92283342 - MSTD LTR MaLR 0 396 1 4205 118 3 5 chr1 189910379 189910990 -92282674 - MER4B LTR ERV1 0 610 1 574 293 39 17 chr1 189911062 189911294 -92282370 - LTR16C LTR ERVL -1 490 254 1035 136 23 28 chr1 189911361 189911537 -92282127 - LTR9B LTR ERV1 0 644 470 432 0 0 0 chr1 189911600 189911648 -92282016 + (CA)n Simple_repeat Simple_repeat 2 49 0 1662 174 58 39 chr1 189911674 189912035 -92281629 - THE1C LTR MaLR -7 368 1 2315 104 0 13 chr1 189912942 189913250 -92280414 + AluSx SINE Alu 2 305 -7 2221 80 10 7 chr1 189913873 189914162 -92279502 - AluSq SINE Alu -23 290 1 325 188 118 24 chr1 189914181 189914266 -92279398 - L2 LINE L2 -18 3295 3203 1500 184 156 67 chr1 189914550 189915013 -92278651 - MLT1D LTR MaLR -1 504 1 702 205 20 36 chr1 189915121 189915316 -92278348 - L1MC4a LINE L1 -1976 5832 5641 1350 130 101 32 chr1 189915441 189915718 -92277946 - L1MB8 LINE L1 -1 6177 5882 499 151 65 11 chr1 189915718 189915811 -92277853 + MER4A LTR ERV1 1 98 -566 1696 131 166 74 chr1 189915811 189916178 -92277486 + MER4A LTR ERV1 261 661 -3 764 119 142 0 chr1 189916182 189916316 -92277348 - L1MB8 LINE L1 -293 5885 5733 1378 167 48 48 chr1 189916316 189916586 -92277078 - AluJo SINE Alu -42 270 1 1128 137 0 0 chr1 189916681 189916849 -92276815 - FRAM SINE Alu -11 165 1 22 0 0 0 chr1 189917104 189917126 -92276538 + GC_rich Low_complexity Low_complexity 1 22 0 2431 83 0 0 chr1 189918060 189918360 -92275304 - AluSx SINE Alu -12 300 1 184 170 128 0 chr1 189918512 189918559 -92275105 + MIR3 SINE MIR 111 163 -45 693 33 11 0 chr1 189920478 189920570 -92273094 - AluY SINE Alu -29 282 190 2176 116 3 3 chr1 189921723 189922015 -92271649 - AluSp SINE Alu -21 292 1 207 311 16 0 chr1 189923376 189923437 -92270227 - MIR SINE MIR -121 141 80 337 287 43 17 chr1 189924016 189924131 -92269533 - L2 LINE L2 -139 3133 3016 356 315 91 75 chr1 189924344 189924773 -92268891 + L2 LINE L2 2831 3266 -6 2486 79 7 0 chr1 189925356 189925659 -92268005 + AluSc SINE Alu 1 305 -4 280 264 189 0 chr1 189925731 189925837 -92267827 + MIR SINE MIR 124 249 -13 275 266 196 23 chr1 189926083 189926256 -92267408 + MIR SINE MIR 60 262 0 202 200 0 0 chr1 189927530 189927565 -92266099 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 198 118 0 0 chr1 189929069 189929103 -92264561 + (TG)n Simple_repeat Simple_repeat 2 35 0 192 179 0 0 chr1 189929485 189929524 -92264140 + T-rich Low_complexity Low_complexity 2 40 0 1535 163 13 58 chr1 189929625 189929732 -92263932 + AluJo SINE Alu 11 121 -191 186 71 0 0 chr1 189929732 189929760 -92263904 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1535 163 13 58 chr1 189929760 189929965 -92263699 + AluJo SINE Alu 121 309 -3 180 0 0 0 chr1 189930698 189930718 -92262946 + (T)n Simple_repeat Simple_repeat 1 20 0 431 264 50 7 chr1 189930836 189930976 -92262688 + MIR3 SINE MIR 58 203 -5 2477 67 0 0 chr1 189931134 189931434 -92262230 + AluY SINE Alu 1 300 -11 808 203 28 57 chr1 189931805 189931873 -92261791 - MER45A DNA AcHobo -1405 176 108 2182 104 3 0 chr1 189931873 189932161 -92261503 + AluSg SINE Alu 1 289 -21 808 203 28 57 chr1 189932161 189932269 -92261395 - MER45A DNA AcHobo -1473 108 5 1804 128 59 7 chr1 189932443 189932733 -92260931 - AluSx SINE Alu -7 305 1 459 254 42 0 chr1 189932813 189932931 -92260733 + MER103 DNA DNA 1 123 -43 337 341 29 22 chr1 189933522 189933660 -92260004 - MIR SINE MIR -115 147 9 2414 82 0 3 chr1 189935415 189935719 -92257945 - AluSx SINE Alu -9 303 1 2415 222 38 66 chr1 189936107 189936890 -92256774 + L1M4 LINE L1 3929 4689 -1457 359 162 103 0 chr1 189936890 189936958 -92256706 - Charlie3 DNA MER1_type -2635 75 1 6150 69 25 3 chr1 189938471 189939561 -92254103 - L1PA8 LINE L1 -3 6169 5003 5651 70 303 1 chr1 189939561 189940490 -92253174 - L1PA8 LINE L1 -1957 4189 2981 2179 119 0 0 chr1 189940490 189940776 -92252888 - AluSx SINE Alu -26 286 1 635 298 65 20 chr1 189940846 189941094 -92252570 + MIR SINE MIR 4 262 0 259 175 123 0 chr1 189941147 189941204 -92252460 - L2 LINE L2 0 3313 3250 2021 124 3 38 chr1 189942262 189942576 -92251088 + AluSx SINE Alu 1 303 -9 24 53 0 0 chr1 189942932 189942970 -92250694 + AT_rich Low_complexity Low_complexity 1 38 0 294 73 0 0 chr1 189944531 189944572 -92249092 + (CATA)n Simple_repeat Simple_repeat 2 42 0 2101 116 11 0 chr1 189944586 189944870 -92248794 - AluSx SINE Alu -25 287 1 282 264 99 50 chr1 189944901 189945102 -92248562 - L1M4 LINE L1 -2744 3402 3192 308 264 98 93 chr1 189945223 189945469 -92248195 + L1ME3A LINE L1 5912 6158 -12 1354 219 118 2 chr1 189945469 189945536 -92248128 - L1M4 LINE L1 -2936 3210 3152 2267 111 3 3 chr1 189945536 189945843 -92247821 - AluSp SINE Alu -6 307 1 1354 219 118 2 chr1 189945843 189946208 -92247456 - L1M4 LINE L1 -2994 3152 2728 913 198 6 0 chr1 189946216 189946388 -92247276 + AluJo SINE Alu 123 295 -17 9861 210 39 55 chr1 189946389 189946886 -92246778 - L1M4 LINE L1 -1070 5076 4573 1828 164 13 0 chr1 189946886 189947184 -92246480 - AluJo SINE Alu -10 302 1 9861 210 39 55 chr1 189947184 189947837 -92245827 - L1M4 LINE L1 -1573 4573 3911 1977 153 6 10 chr1 189947837 189948150 -92245514 + AluSx SINE Alu 1 312 0 9861 210 39 55 chr1 189948150 189949876 -92243788 - L1M4 LINE L1 -2235 3911 2245 21 36 0 0 chr1 189949876 189949904 -92243760 + AT_rich Low_complexity Low_complexity 1 28 0 1936 154 25 0 chr1 189949921 189950206 -92243458 + AluSx SINE Alu 3 294 -18 5351 132 53 46 chr1 189950207 189951326 -92242338 - L1MA7 LINE L1 -6 6285 5160 573 119 46 55 chr1 189952485 189952594 -92241070 - L1PA16 LINE L1 -66 6100 5993 268 340 119 44 chr1 189952820 189953114 -92240550 + L2 LINE L2 2856 3171 -101 184 314 70 12 chr1 189953175 189953261 -92240403 + MIR3 SINE MIR 95 185 -23 1544 205 17 14 chr1 189954100 189954393 -92239271 - AluJo SINE Alu -18 294 1 21 0 0 0 chr1 189954395 189954416 -92239248 + AT_rich Low_complexity Low_complexity 1 21 0 803 125 0 0 chr1 189954618 189954722 -92238942 - U6 snRNA snRNA -3 104 1 1631 185 18 4 chr1 189955105 189955386 -92238278 - AluJo SINE Alu -27 285 1 243 0 0 0 chr1 189955400 189955427 -92238237 + (TA)n Simple_repeat Simple_repeat 1 27 0 1394 240 111 12 chr1 189955481 189955806 -92237858 - LTR18A LTR ERVL 0 357 1 41478 121 21 18 chr1 189955807 189961837 -92231827 - HERVL18 LTR ERVL 0 6047 2 1549 216 100 15 chr1 189961844 189962173 -92231491 - LTR18A LTR ERVL 0 357 1 226 227 0 0 chr1 189962199 189962243 -92231421 - MIR3 SINE MIR -14 194 151 22 56 0 0 chr1 189962256 189962292 -92231372 + AT_rich Low_complexity Low_complexity 1 36 0 2072 113 17 14 chr1 189962560 189962853 -92230811 - AluSx SINE Alu -18 294 1 471 302 7 7 chr1 189963036 189963175 -92230489 + MIR SINE MIR 42 180 -82 346 310 51 13 chr1 189963303 189963461 -92230203 + L1ME4a LINE L1 5734 5897 -224 26 30 0 0 chr1 189963514 189963547 -92230117 + AT_rich Low_complexity Low_complexity 1 33 0 2253 117 0 0 chr1 189963547 189963847 -92229817 + AluSx SINE Alu 1 300 -12 6824 171 18 38 chr1 189963853 189965243 -92228421 - L1MA3 LINE L1 -10 6295 4878 254 31 0 0 chr1 189965243 189965275 -92228389 + LTR39 LTR ERV1 400 431 -352 6824 171 18 38 chr1 189965275 189965288 -92228376 - L1MA3 LINE L1 -1427 4878 4866 9700 189 28 19 chr1 189965288 189966302 -92227362 - L1PA15 LINE L1 0 6165 5162 1885 178 0 0 chr1 189966302 189966606 -92227058 - AluJb SINE Alu -8 304 1 9700 189 28 19 chr1 189966606 189968347 -92225317 - L1PA15 LINE L1 -1003 5162 3374 6824 171 18 38 chr1 189968347 189969202 -92224462 - L1MA3 LINE L1 -1439 4866 4066 1106 294 100 62 chr1 189969533 189969571 -92224093 + L2 LINE L2 2293 2328 -985 2963 170 14 29 chr1 189969571 189970084 -92223580 - MLT1D LTR MaLR 0 505 1 1106 294 100 62 chr1 189970084 189970976 -92222688 + L2 LINE L2 2328 3246 -67 587 197 86 0 chr1 189974304 189974421 -92219243 + FLAM_A SINE Alu 1 127 -6 203 204 19 0 chr1 189975314 189975368 -92218296 + CT-rich Low_complexity Low_complexity 1 55 0 803 179 0 8 chr1 189975639 189975773 -92217891 + AluJo SINE Alu 7 139 -173 1587 138 31 8 chr1 189975774 189976034 -92217630 + AluJb SINE Alu 42 307 -5 351 0 0 0 chr1 189976502 189976541 -92217123 + (CA)n Simple_repeat Simple_repeat 1 39 0 4242 164 37 12 chr1 189977466 189978242 -92215422 - L1MB8 LINE L1 0 6178 5383 707 299 66 77 chr1 189978429 189978709 -92214955 + L2 LINE L2 2850 3124 -189 876 154 0 15 chr1 189978709 189978839 -92214825 - FLAM_C SINE Alu -5 128 1 707 299 66 77 chr1 189978839 189979027 -92214637 + L2 LINE L2 3124 3313 0 271 219 110 0 chr1 189979178 189979251 -92214413 + MIR SINE MIR 109 189 -73 1258 216 119 10 chr1 189979314 189979624 -92214040 + MER2 DNA MER2_type 1 344 0 663 197 74 0 chr1 189979661 189979783 -92213881 + FLAM_C SINE Alu 1 131 -2 1479 163 0 0 chr1 189980008 189980229 -92213435 - AluJb SINE Alu -19 293 73 432 216 0 29 chr1 189980876 189980978 -92212686 + MIR SINE MIR 162 260 -2 1607 122 0 14 chr1 189981152 189981373 -92212291 + AluSx SINE Alu 1 218 -94 400 182 0 0 chr1 189981404 189981470 -92212194 + L1MB7 LINE L1 6000 6065 -119 1256 111 81 15 chr1 189981796 189981994 -92211670 - AluJo SINE Alu -17 295 85 2749 29 0 0 chr1 189983823 189984129 -92209535 + AluY SINE Alu 1 306 -5 378 0 0 0 chr1 189984525 189984567 -92209097 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 48 0 0 chr1 189985142 189985184 -92208480 + AT_rich Low_complexity Low_complexity 1 42 0 510 275 24 45 chr1 189985326 189985573 -92208091 - L1ME4a LINE L1 -152 5969 5728 1344 96 0 0 chr1 189985574 189985741 -92207923 - AluSq SINE Alu -13 300 134 2344 110 0 0 chr1 189985741 189986042 -92207622 - AluSx SINE Alu -11 301 1 301 157 0 0 chr1 189986047 189986098 -92207566 - L1ME4a LINE L1 -2084 5724 5674 2301 92 0 0 chr1 189986251 189986545 -92207119 + AluSg SINE Alu 1 294 -16 377 300 57 14 chr1 189986571 189986711 -92206953 + MER5A DNA MER1_type 44 189 0 2471 95 45 31 chr1 189987544 189987902 -92205762 - THE1B LTR MaLR 0 364 2 947 140 40 7 chr1 189987967 189988117 -92205547 + AluSg/x SINE Alu 136 290 -22 201 138 0 0 chr1 189988117 189988146 -92205518 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 647 276 7 7 chr1 189988155 189988300 -92205364 - L2 LINE L2 0 3313 3169 208 349 47 9 chr1 189988511 189988617 -92205047 + L2 LINE L2 3163 3272 0 341 157 0 0 chr1 189988799 189988850 -92204814 - Alu SINE Alu -246 53 3 2579 44 0 0 chr1 189989155 189989450 -92204214 + AluY SINE Alu 1 295 -16 22 56 0 0 chr1 189989604 189989640 -92204024 + AT_rich Low_complexity Low_complexity 1 36 0 537 124 0 83 chr1 189989837 189990030 -92203634 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 938 69 8 0 chr1 189990059 189990190 -92203474 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 1696 121 19 23 chr1 189990201 189990458 -92203206 - AluSq SINE Alu -55 258 3 347 215 13 158 chr1 189990688 189990730 -92202934 + L3 LINE CR1 626 672 -905 1579 183 18 7 chr1 189990730 189991014 -92202650 - AluJo SINE Alu -25 287 1 347 215 13 158 chr1 189991014 189991129 -92202535 + L3 LINE CR1 672 760 -817 424 310 26 13 chr1 189991158 189991313 -92202351 + MIR SINE MIR 28 184 -78 190 308 0 0 chr1 189991368 189991433 -92202231 + L3 LINE CR1 760 824 -753 2129 117 0 0 chr1 189992511 189992801 -92200863 - AluSg SINE Alu -20 290 1 2538 130 55 19 chr1 189992824 189993246 -92200418 - LTR23 LTR ERV1 0 437 1 2895 56 14 0 chr1 189994264 189994643 -92199021 - L1PA5 LINE L1 0 6154 5789 4232 137 45 20 chr1 189994688 189994731 -92198933 - LTR8A LTR ERV1 0 727 687 4558 124 8 8 chr1 189994731 189995366 -92198298 - MER41B LTR ERV1 0 635 1 4232 137 45 20 chr1 189995366 189996031 -92197633 - LTR8A LTR ERV1 -40 687 1 21 0 0 0 chr1 189996639 189996660 -92197004 + AT_rich Low_complexity Low_complexity 1 21 0 512 290 89 0 chr1 189997121 189997290 -92196374 - L2 LINE L2 -2 3311 3128 258 269 29 96 chr1 189997510 189997586 -92196078 - L2 LINE L2 -17 3255 3186 2381 86 7 0 chr1 189997586 189997889 -92195775 + AluSq SINE Alu 1 305 -8 258 269 29 96 chr1 189997889 189997916 -92195748 - L2 LINE L2 -86 3186 3159 439 215 256 0 chr1 189997956 189998077 -92195587 + MER5A DNA MER1_type 35 186 -3 274 249 32 146 chr1 189998119 189998428 -92195236 - L2 LINE L2 -191 3081 2808 1959 193 66 21 chr1 189998450 189998829 -92194835 - MSTD LTR MaLR 0 396 1 198 240 0 0 chr1 189998851 189998901 -92194763 + CT-rich Low_complexity Low_complexity 3 52 0 2125 171 26 0 chr1 189998983 189999362 -92194302 - L1MA9 LINE L1 -32 6280 5892 768 172 8 15 chr1 189999387 189999521 -92194143 - FLAM_C SINE Alu 0 133 1 2311 91 0 0 chr1 190000331 190000640 -92193024 + AluSq SINE Alu 1 309 0 598 269 53 37 chr1 190000949 190001194 -92192470 + MIR SINE MIR 13 261 -1 2177 107 21 0 chr1 190001260 190001551 -92192113 + AluSq SINE Alu 1 297 -16 423 183 209 0 chr1 190001628 190001743 -92191921 - MER5A DNA MER1_type -21 168 30 622 211 102 0 chr1 190001763 190001891 -92191773 + MER33 DNA MER1_type 1 141 -183 220 143 39 50 chr1 190001901 190002083 -92191581 + (TA)n Simple_repeat Simple_repeat 1 180 0 424 134 157 34 chr1 190002113 190002283 -92191381 + Charlie5 DNA MER1_type 2377 2602 -10 352 245 50 43 chr1 190002473 190002612 -92191052 - MIR SINE MIR -60 202 63 691 172 2 133 chr1 190003047 190003241 -92190423 + MER5B DNA MER1_type 11 185 -4 693 270 114 21 chr1 190003344 190003581 -92190083 - MIR SINE MIR -2 260 2 200 378 21 49 chr1 190003645 190003788 -92189876 - MIR3 SINE MIR -66 142 4 357 268 93 97 chr1 190004788 190004873 -92188791 + L2 LINE L2 2709 2793 -479 1479 183 39 32 chr1 190004873 190005152 -92188512 + AluJo SINE Alu 3 283 -29 258 32 0 0 chr1 190005157 190005188 -92188476 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 357 268 93 97 chr1 190005188 190005668 -92187996 + L2 LINE L2 2797 3268 -4 476 256 36 77 chr1 190005867 190006062 -92187602 + MER5A DNA MER1_type 2 188 -1 365 209 124 38 chr1 190008336 190008441 -92185223 + LTR8 LTR ERV1 1 114 -577 727 216 92 42 chr1 190008515 190008816 -92184848 + LTR8A LTR ERV1 116 511 -180 267 79 0 0 chr1 190009016 190009054 -92184610 + (TG)n Simple_repeat Simple_repeat 1 38 0 298 230 92 58 chr1 190009831 190009918 -92183746 + L2 LINE L2 3208 3297 -16 2067 127 3 7 chr1 190010054 190010362 -92183302 - AluSx SINE Alu -3 309 3 2085 164 111 36 chr1 190010373 190010843 -92182821 - L1MB8 LINE L1 -1 6177 5673 239 279 81 45 chr1 190010843 190010954 -92182710 - MIR SINE MIR -99 163 49 1994 108 6 51 chr1 190012686 190013000 -92180664 - AluSx SINE Alu 0 312 13 372 291 136 58 chr1 190013233 190013594 -92180070 + L2 LINE L2 2193 2581 -733 601 317 64 3 chr1 190013967 190013983 -92179681 - L1ME LINE L1 -382 5739 5725 1393 138 69 0 chr1 190013983 190014215 -92179449 - L1MA5A LINE L1 0 6297 6050 601 317 64 3 chr1 190014215 190014435 -92179229 - L1ME LINE L1 -396 5725 5479 979 152 0 13 chr1 190014450 190014601 -92179063 - AluJb SINE Alu -162 150 2 461 224 43 9 chr1 190014601 190014717 -92178947 + MER69 DNA AcHobo 682 801 -425 876 214 36 48 chr1 190014722 190014974 -92178690 + MER69 DNA AcHobo 2021 2269 -257 1397 160 100 0 chr1 190015065 190015346 -92178318 - MLT1C LTR MaLR -153 314 6 1054 223 30 83 chr1 190015587 190015923 -92177741 + MLT1J LTR MaLR 186 503 -8 455 216 46 26 chr1 190015962 190016115 -92177549 - L1MEd LINE L1 -5282 837 682 1615 251 100 24 chr1 190016233 190016771 -92176893 - MLT1G1 LTR MaLR 0 595 17 198 0 0 0 chr1 190016771 190016793 -92176871 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 300 291 48 145 chr1 190016810 190017099 -92176565 - L1MEd LINE L1 -5548 571 311 394 297 58 7 chr1 190017099 190017237 -92176427 + L2 LINE L2 3123 3267 -5 21 36 0 0 chr1 190017311 190017339 -92176325 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 190018121 190018150 -92175514 + AT_rich Low_complexity Low_complexity 1 29 0 2243 109 7 0 chr1 190018744 190019047 -92174617 + AluSg SINE Alu 1 305 -5 539 297 145 37 chr1 190019095 190019496 -92174168 - MLT1J2 LTR MaLR 0 450 7 304 285 98 0 chr1 190019757 190019880 -92173784 - MER69 DNA AcHobo -2391 135 1 1736 221 84 7 chr1 190020070 190020583 -92173081 + MLT2F LTR ERVL 1 598 -65 629 82 10 0 chr1 190020583 190020680 -92172984 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 6317 123 42 17 chr1 190020680 190020852 -92172812 + Tigger3b DNA MER2_type 140 306 -2722 2464 79 0 16 chr1 190020852 190021169 -92172495 - AluSq SINE Alu 0 313 2 6317 123 42 17 chr1 190021169 190022061 -92171603 + Tigger3b DNA MER2_type 306 1231 0 840 264 108 0 chr1 190022063 190022275 -92171389 - MIR SINE MIR -25 237 3 768 243 74 5 chr1 190022328 190022517 -92171147 - MIR SINE MIR -2 260 59 243 238 231 34 chr1 190022516 190022532 -92171132 - L3 LINE CR1 -27 1550 1538 * 501 17 0 0 chr1 190022532 190022590 -92171074 + (TG)n Simple_repeat Simple_repeat 2 59 0 243 238 231 34 chr1 190022590 190022720 -92170944 - L3 LINE CR1 -39 1538 1375 467 248 60 17 chr1 190022735 190022852 -92170812 + MER93b LTR ERV1 14 135 -238 275 117 70 23 chr1 190022883 190023054 -92170610 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr1 190023055 190023076 -92170588 + AT_rich Low_complexity Low_complexity 1 21 0 721 191 17 0 chr1 190023122 190023237 -92170427 - FLAM_C SINE Alu -25 118 2 626 225 18 30 chr1 190023242 190023411 -92170253 + MER93b LTR ERV1 207 373 0 255 174 0 0 chr1 190024002 190024048 -92169616 + MER93b-int LTR ERV1 744 789 -6748 4396 89 4 2 chr1 190024442 190024995 -92168669 - MER41A LTR ERV1 0 554 1 992 232 44 14 chr1 190025328 190025646 -92168018 + MER34C LTR ERV1 60 430 -155 3032 204 85 67 chr1 190025752 190027184 -92166480 + MER93b-int LTR ERV1 891 3607 -2339 378 216 0 0 chr1 190027321 190027409 -92166255 + MER93b-int LTR ERV1 1777 1864 -3072 226 161 37 37 chr1 190027425 190027506 -92166158 + (TTTAA)n Simple_repeat Simple_repeat 4 84 0 2005 124 3 20 chr1 190027507 190027805 -92165859 - AluSx SINE Alu -19 293 1 784 121 53 15 chr1 190027817 190027949 -92165715 + MER93b-int LTR ERV1 4042 4178 -2153 2395 91 0 38 chr1 190027956 190028296 -92165368 - THE1A LTR MaLR -28 327 1 10335 99 7 6 chr1 190028296 190029881 -92163783 - THE1A-int LTR MaLR 0 1580 1 2704 96 3 0 chr1 190029881 190030235 -92163429 - THE1A LTR MaLR 0 355 1 811 247 123 17 chr1 190030235 190030535 -92163129 + MER93b-int LTR ERV1 4374 4705 -1626 1050 124 0 0 chr1 190030552 190030697 -92162967 + AluSg/x SINE Alu 145 289 -23 276 53 0 0 chr1 190030727 190030765 -92162899 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 4126 191 48 30 chr1 190030767 190031694 -92161970 + MER93b-int LTR ERV1 3403 4346 -590 665 240 31 65 chr1 190031695 190032162 -92161502 + MER93b-int LTR ERV1 3777 7183 -212 23 0 0 0 chr1 190032349 190032372 -92161292 + AT_rich Low_complexity Low_complexity 1 23 0 868 246 103 38 chr1 190032372 190032713 -92160951 + MER93b LTR ERV1 11 373 0 813 312 185 13 chr1 190032717 190033317 -92160347 - L3 LINE CR1 -282 1295 593 272 292 51 29 chr1 190036061 190036198 -92157466 - MIR SINE MIR -56 206 67 921 229 0 0 chr1 190036414 190036584 -92157080 - FAM SINE Alu -5 170 1 2236 88 28 0 chr1 190036663 190036948 -92156716 - AluSc SINE Alu -16 293 1 234 0 0 0 chr1 190037057 190037083 -92156581 + (T)n Simple_repeat Simple_repeat 1 26 0 195 376 24 0 chr1 190037276 190037401 -92156263 + MIR SINE MIR 90 217 -45 4260 168 4 35 chr1 190037685 190038494 -92155170 + L1MA10 LINE L1 5551 6334 0 5058 133 18 5 chr1 190038758 190039690 -92153974 - L1PA16 LINE L1 -15 6151 5175 462 110 8 158 chr1 190039709 190039836 -92153828 - LTR12 LTR ERV1 -357 357 250 994 200 11 18 chr1 190039853 190040104 -92153560 - L1P LINE L1 -924 5222 4978 * 44005 31 21 0 chr1 190040103 190046120 -92147544 - L1PA2 LINE L1 0 6155 8 7526 205 34 24 chr1 190046122 190047882 -92145782 - L1 LINE L1 -1152 4994 3249 705 149 28 0 chr1 190047882 190047989 -92145675 - FLAM_C SINE Alu -27 116 7 7526 205 34 24 chr1 190047989 190048340 -92145324 - L1 LINE L1 -2897 3249 2903 1064 238 21 4 chr1 190048396 190048631 -92145033 - MER8 DNA MER2_type 0 239 1 226 260 0 42 chr1 190048733 190048829 -92144835 - L1MC4 LINE L1 -1337 6705 6614 * 285 250 71 0 chr1 190048783 190048867 -92144797 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr1 190048867 190048888 -92144776 + (TA)n Simple_repeat Simple_repeat 1 21 0 2199 126 0 3 chr1 190048888 190049190 -92144474 - AluSx SINE Alu -11 301 1 234 0 0 0 chr1 190049417 190049443 -92144221 + (CA)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chr1 190049443 190049482 -92144182 + polypyrimidine Low_complexity Low_complexity 4 42 0 7310 52 1 1 chr1 190049658 190051256 -92142408 - L1PA7 LINE L1 -4 6150 4553 392 314 90 43 chr1 190052224 190052523 -92141141 + L3 LINE CR1 358 670 -907 621 270 68 30 chr1 190053091 190053328 -92140336 + MIR SINE MIR 2 247 -15 4123 161 42 6 chr1 190053630 190054338 -92139326 + MER50 LTR ERV1 1 734 0 1249 212 118 28 chr1 190054726 190055089 -92138575 + MSTD LTR MaLR 1 396 0 561 281 64 20 chr1 190055401 190055650 -92138014 - MIR SINE MIR 0 262 3 223 203 31 0 chr1 190056009 190056073 -92137591 + CT-rich Low_complexity Low_complexity 5 70 0 1881 123 35 42 chr1 190056366 190056676 -92136988 + AluSx SINE Alu 1 308 -4 1683 199 3 0 chr1 190058708 190059005 -92134659 - AluJo SINE Alu -14 298 1 211 222 0 19 chr1 190059024 190059078 -92134586 - L2 LINE L2 -555 2759 2707 * 532 295 13 0 chr1 190059071 190059220 -92134444 - MIR3 SINE MIR 0 208 58 321 257 0 0 chr1 190059521 190059595 -92134069 - L2 LINE L2 0 3313 3240 305 100 20 0 chr1 190059738 190059788 -92133876 + (GA)n Simple_repeat Simple_repeat 1 51 0 257 227 67 42 chr1 190059807 190059926 -92133738 - L2 LINE L2 -423 2891 2770 382 286 53 8 chr1 190059943 190060076 -92133588 - MIR SINE MIR -3 259 121 448 213 14 64 chr1 190062110 190062251 -92131413 - MLT1J LTR MaLR -37 474 341 298 303 49 21 chr1 190062250 190062392 -92131272 - MLT1J LTR MaLR -363 148 3 * 279 274 80 99 chr1 190062394 190062606 -92131058 - MLT1K LTR MaLR -189 399 192 528 183 124 22 chr1 190062949 190063086 -92130578 - MLT1K LTR MaLR -64 524 374 316 241 73 7 chr1 190063161 190063355 -92130309 - MLT1K LTR MaLR -342 246 3 577 70 7 14 chr1 190064799 190064866 -92128798 - L1MC/D LINE L1 -418 5736 5672 2967 35 0 0 chr1 190064866 190065211 -92128453 + L1PA4 LINE L1 5808 6155 0 577 70 7 14 chr1 190065211 190065225 -92128439 - L1MC/D LINE L1 -482 5672 5659 26 0 0 0 chr1 190065475 190065501 -92128163 + AT_rich Low_complexity Low_complexity 1 26 0 283 299 63 0 chr1 190066305 190066432 -92127232 + MIR SINE MIR 119 253 -9 198 156 89 0 chr1 190066398 190066443 -92127221 + L2 LINE L2 3265 3313 0 * 596 310 83 4 chr1 190066988 190067230 -92126434 + MIR SINE MIR 1 261 -1 286 183 100 0 chr1 190067328 190067388 -92126276 + L2 LINE L2 3236 3301 -12 880 115 15 0 chr1 190068703 190068833 -92124831 + FLAM_C SINE Alu 1 132 -1 1890 123 0 0 chr1 190069779 190070039 -92123625 + AluSc SINE Alu 50 309 0 1343 192 25 106 chr1 190070642 190071048 -92122616 + MLT1A2 LTR MaLR 1 373 -1 314 247 52 0 chr1 190071273 190071350 -92122314 - MIR SINE MIR -73 189 109 1554 174 36 7 chr1 190071702 190071983 -92121681 - AluJo SINE Alu -10 302 14 535 229 61 0 chr1 190072315 190072446 -92121218 - MIR SINE MIR -48 214 76 217 301 73 29 chr1 190072665 190072937 -92120727 - L2 LINE L2 -674 2640 2357 546 275 12 18 chr1 190073154 190073325 -92120339 - MER91B DNA MER1_type 0 190 21 189 316 25 0 chr1 190075403 190075482 -92118182 - L2 LINE L2 -4 3309 3229 445 270 29 54 chr1 190075685 190075880 -92117784 - L1ME LINE L1 -422 5699 5517 2135 106 0 0 chr1 190075968 190076250 -92117414 - AluSg SINE Alu -2 308 27 458 374 29 0 chr1 190076896 190077035 -92116629 - MER91A DNA MER1_type -52 144 2 293 266 13 0 chr1 190077381 190077460 -92116204 - MLT1J1 LTR MaLR -9 437 358 1344 167 10 2 chr1 190077490 190077782 -92115882 - MER2 DNA MER2_type 0 345 1 252 195 18 0 chr1 190077782 190077837 -92115827 - MLT1J2 LTR MaLR -138 366 264 274 277 48 0 chr1 190077881 190077964 -92115700 - MLT1J2 LTR MaLR -291 159 73 207 0 0 0 chr1 190078379 190078402 -92115262 + (T)n Simple_repeat Simple_repeat 1 23 0 552 201 183 6 chr1 190079235 190079404 -92114260 + MIR SINE MIR 61 259 -3 219 317 100 25 chr1 190080075 190080195 -92113469 - L2 LINE L2 -3 3310 3182 1833 184 67 59 chr1 190080463 190080953 -92112711 + MLT1D LTR MaLR 9 502 -3 386 287 0 0 chr1 190081367 190081482 -92112182 + MIR3 SINE MIR 87 201 -7 3284 199 30 33 chr1 190081551 190082290 -92111374 + L1MA9 LINE L1 5509 6247 -65 2298 101 0 7 chr1 190082290 190082586 -92111078 - AluSx SINE Alu -17 295 2 3284 199 30 33 chr1 190082586 190082614 -92111050 + L1MA9 LINE L1 6247 6274 -38 226 289 48 24 chr1 190083256 190083339 -92110325 + L2 LINE L2 3188 3272 0 190 342 94 51 chr1 190083403 190083774 -92109890 - L2 LINE L2 -38 3234 2848 187 258 0 16 chr1 190083858 190083920 -92109744 - L2 LINE L2 -559 2755 2695 349 285 95 13 chr1 190084071 190084229 -92109435 + MIR SINE MIR 89 259 -3 314 306 100 19 chr1 190084943 190085103 -92108561 - MIR SINE MIR -10 252 80 219 286 0 0 chr1 190085511 190085567 -92108097 + L2 LINE L2 3201 3256 -16 471 198 182 0 chr1 190085983 190086104 -92107560 + MIR3 SINE MIR 20 162 -46 524 140 11 0 chr1 190086279 190086372 -92107292 + CT-rich Low_complexity Low_complexity 3 96 0 1663 189 6 22 chr1 190086376 190086693 -92106971 - AluJo SINE Alu 0 312 1 22 56 0 0 chr1 190086993 190087029 -92106635 + AT_rich Low_complexity Low_complexity 1 36 0 420 271 12 59 chr1 190087819 190087989 -92105675 + MIR SINE MIR 84 245 -17 229 328 67 41 chr1 190088817 190089012 -92104652 + MIR SINE MIR 8 207 -55 600 244 84 23 chr1 190089143 190089378 -92104286 + MIR SINE MIR 9 254 -8 423 333 0 15 chr1 190089666 190089801 -92103863 - L2 LINE L2 -1 3271 3139 21 0 0 0 chr1 190090000 190090021 -92103643 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr1 190090204 190090245 -92103419 + (TG)n Simple_repeat Simple_repeat 1 41 0 254 295 47 58 chr1 190091893 190092083 -92101581 - L3 LINE CR1 -1 1576 1389 328 267 101 85 chr1 190092111 190092546 -92101118 - L2 LINE L2 0 3313 2872 189 0 0 0 chr1 190092703 190092724 -92100940 + (T)n Simple_repeat Simple_repeat 1 21 0 319 263 0 13 chr1 190092828 190092904 -92100760 + Tigger5 DNA MER2_type 1 75 -2248 1521 136 0 16 chr1 190092912 190093155 -92100509 + Tigger5 DNA MER2_type 2085 2323 0 3423 88 20 30 chr1 190093595 190094086 -92099578 - LTR15 LTR ERV1 -7 486 1 637 305 126 30 chr1 190094511 190095003 -92098661 - L2 LINE L2 -517 2797 2259 2160 167 14 3 chr1 190095018 190095378 -92098286 - MLT1A1 LTR MaLR 0 365 2 429 197 34 77 chr1 190097171 190097288 -92096376 - MLT1J LTR MaLR -7 504 393 543 291 69 82 chr1 190097669 190098409 -92095255 + L1MEd LINE L1 614 1343 -4862 283 268 62 0 chr1 190098596 190098708 -92094956 + L1MEd LINE L1 1634 1752 -4644 1056 260 94 21 chr1 190099108 190099585 -92094079 + L1MEd LINE L1 2179 2690 -3525 344 216 142 46 chr1 190099610 190099845 -92093819 - L2 LINE L2 -45 3268 2942 373 304 109 5 chr1 190101360 190101580 -92092084 - LTR16B LTR ERVL -78 386 144 241 336 26 35 chr1 190102257 190102370 -92091294 + MIR SINE MIR 38 149 -59 27 0 0 0 chr1 190102415 190102442 -92091222 + AT_rich Low_complexity Low_complexity 1 27 0 657 150 17 0 chr1 190102442 190102562 -92091102 - FRAM SINE Alu -21 155 34 336 353 108 0 chr1 190102686 190102825 -92090839 + L2 LINE L2 3111 3264 -8 2660 48 0 0 chr1 190102846 190103155 -92090509 + AluY SINE Alu 1 309 -2 663 235 107 5 chr1 190103199 190103386 -92090278 + MIR SINE MIR 36 241 -21 308 317 21 14 chr1 190104271 190104416 -92089248 - MIR SINE MIR 0 262 117 1148 113 0 48 chr1 190104810 190104978 -92088686 + AluSq SINE Alu 1 160 -153 551 121 137 8 chr1 190105194 190105318 -92088346 + FLAM_C SINE Alu 2 141 -2 396 333 0 29 chr1 190105553 190105677 -92087987 + MIR3 SINE MIR 2 121 -87 2486 81 0 0 chr1 190105677 190105975 -92087689 - AluSg SINE Alu -12 298 1 396 333 0 29 chr1 190105975 190106021 -92087643 + MIR3 SINE MIR 121 167 -41 725 261 125 15 chr1 190106791 190107120 -92086544 - L1ME4a LINE L1 0 6121 5757 890 190 5 46 chr1 190107350 190107545 -92086119 + MLT1A1 LTR MaLR 3 189 -176 429 363 102 16 chr1 190107650 190108022 -92085642 - L3 LINE CR1 -890 687 284 1550 171 12 1 chr1 190108294 190108730 -92084934 + MLT1D LTR MaLR 2 505 0 3548 165 16 14 chr1 190108919 190109562 -92084102 - L1MB7 LINE L1 -14 6170 5527 1897 129 81 66 chr1 190110007 190110291 -92083373 - MLT1B LTR MaLR -3 387 94 1959 121 0 0 chr1 190110291 190110555 -92083109 - AluSg SINE Alu -13 297 34 1897 129 81 66 chr1 190110555 190110651 -92083013 - MLT1B LTR MaLR -296 94 1 328 296 67 30 chr1 190112257 190112588 -92081076 - L1MC5 LINE L1 -66 7895 7553 277 228 0 0 chr1 190112909 190112966 -92080698 + L1MA8 LINE L1 5916 5972 -319 283 268 58 51 chr1 190113098 190113236 -92080428 + MIR SINE MIR 48 186 -76 431 18 18 0 chr1 190113285 190113341 -92080323 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 272 222 32 0 chr1 190113972 190114035 -92079629 - MER5A DNA MER1_type -7 182 118 474 331 26 10 chr1 190114628 190114933 -92078731 - L2 LINE L2 -933 2381 2072 956 125 37 0 chr1 190114986 190115122 -92078542 + AluJo SINE Alu 1 141 -171 291 28 0 0 chr1 190116135 190116171 -92077493 + (TG)n Simple_repeat Simple_repeat 2 37 0 878 230 211 41 chr1 190116779 190117197 -92076467 + MLT1J LTR MaLR 23 511 0 296 275 0 0 chr1 190117704 190117773 -92075891 + L3 LINE CR1 1508 1576 -1 224 59 29 0 chr1 190118738 190118772 -92074892 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2344 92 0 0 chr1 190118799 190119093 -92074571 - AluSc SINE Alu -15 294 1 349 286 29 0 chr1 190119966 190120071 -92073593 + MIR SINE MIR 41 148 -114 246 264 85 19 chr1 190120522 190120628 -92073036 - L3 LINE CR1 -488 1089 977 203 315 170 15 chr1 190120742 190120942 -92072722 - MIR SINE MIR -30 232 2 1914 110 7 60 chr1 190122613 190122914 -92070750 + AluSg SINE Alu 26 310 0 538 278 64 86 chr1 190122988 190123566 -92070098 - L2 LINE L2 0 3272 2660 2079 125 0 33 chr1 190123966 190124271 -92069393 - AluSx SINE Alu -17 295 1 1436 204 22 13 chr1 190125024 190125337 -92068327 + MER33 DNA MER1_type 9 324 0 226 300 0 60 chr1 190125386 190125486 -92068178 + MIR SINE MIR 97 190 -72 251 254 53 35 chr1 190125512 190125626 -92068038 + LTR16A LTR ERVL 25 140 -310 1090 330 49 33 chr1 190125660 190126348 -92067316 + HERVL LTR ERVL 3453 4151 -1503 843 345 38 28 chr1 190126354 190126956 -92066708 + HERVL LTR ERVL 4719 5326 -438 415 290 28 6 chr1 190127241 190127459 -92066205 + LTR16A LTR ERVL 188 443 -7 225 200 40 0 chr1 190127602 190127652 -92066012 + MIR3 SINE MIR 144 195 -13 226 328 23 37 chr1 190127688 190127829 -92065835 - MIR SINE MIR -23 185 40 531 201 176 6 chr1 190128103 190128262 -92065402 - MER5A DNA MER1_type 0 189 4 329 167 42 62 chr1 190129983 190130079 -92063585 - MIR SINE MIR -70 192 99 203 200 22 0 chr1 190130871 190130916 -92062748 + MIR SINE MIR 81 126 -82 216 97 0 0 chr1 190131631 190131662 -92062002 + (A)n Simple_repeat Simple_repeat 1 31 0 222 98 33 33 chr1 190131769 190131830 -92061834 + A-rich Low_complexity Low_complexity 4 64 0 316 177 188 10 chr1 190131844 190131940 -92061724 + MIR SINE MIR 16 128 -80 300 53 0 0 chr1 190132052 190132090 -92061574 + (TG)n Simple_repeat Simple_repeat 1 38 0 229 26 53 0 chr1 190132090 190132128 -92061536 + (GA)n Simple_repeat Simple_repeat 2 41 0 252 242 143 0 chr1 190132624 190132715 -92060949 - L2 LINE L2 -16 3256 3153 250 286 78 47 chr1 190133535 190133729 -92059935 - MIR SINE MIR -1 261 1 2263 122 3 0 chr1 190135489 190135800 -92057864 + AluSx SINE Alu 1 312 0 237 290 75 56 chr1 190135818 190135925 -92057739 + L2 LINE L2 3154 3262 -10 2208 100 0 3 chr1 190136434 190136725 -92056939 + AluSc SINE Alu 3 292 -17 682 94 0 10 chr1 190136767 190136902 -92056762 + AluSg/x SINE Alu 205 310 0 2245 191 20 47 chr1 190138858 190139367 -92054297 - MLT1D LTR MaLR -10 495 1 192 139 56 0 chr1 190139374 190139410 -92054254 + L2 LINE L2 2589 2626 -688 238 294 15 15 chr1 190139424 190139492 -92054172 - MIR SINE MIR -174 88 21 * 584 246 69 44 chr1 190139450 190139653 -92054011 + MIR SINE MIR 21 228 -34 307 273 50 10 chr1 190139676 190139775 -92053889 + L2 LINE L2 2629 2731 -583 300 311 73 30 chr1 190139810 190139974 -92053690 + L2 LINE L2 2851 3021 -251 29 47 0 0 chr1 190140306 190140349 -92053315 + AT_rich Low_complexity Low_complexity 1 43 0 748 284 139 26 chr1 190143073 190143557 -92050107 - L2 LINE L2 -26 3287 2751 470 296 76 12 chr1 190144129 190144301 -92049363 + L2 LINE L2 27 209 -3105 525 242 188 5 chr1 190144321 190144507 -92049157 + L2 LINE L2 3094 3313 0 204 257 114 29 chr1 190145090 190145160 -92048504 + L2 LINE L2 3134 3209 -63 554 217 87 0 chr1 190146102 190146240 -92047424 + Charlie7 DNA MER1_type 8 157 -2455 445 197 43 26 chr1 190146219 190146336 -92047328 + Charlie7 DNA MER1_type 2489 2607 -5 * 1088 128 0 6 chr1 190148226 190148406 -92045258 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 4325 70 28 14 chr1 190148406 190148973 -92044691 + LTR14C LTR ERVK 12 586 -1 1138 90 11 11 chr1 190148974 190148985 -92044679 + (TTTC)n Simple_repeat Simple_repeat 1 189 0 1138 90 11 11 chr1 190148985 190149163 -92044501 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 24751 140 6 7 chr1 190149220 190153219 -92040445 - L1P LINE L1 -945 5201 1205 1949 135 34 0 chr1 190154035 190154332 -92039332 + AluSc SINE Alu 1 307 -2 1867 149 39 36 chr1 190155366 190155434 -92038230 - L1PA16 LINE L1 -2 6164 6098 3076 76 0 18 chr1 190155434 190155816 -92037848 - THE1C LTR MaLR 0 375 1 1867 149 39 36 chr1 190155816 190156082 -92037582 - L1PA16 LINE L1 -68 6098 5829 1455 116 102 4 chr1 190156089 190156314 -92037350 - L1PA16 LINE L1 -454 5712 5466 * 3157 252 11 14 chr1 190156296 190157148 -92036516 + L1 LINE L1 2243 3091 -3055 416 360 30 5 chr1 190158434 190158634 -92035030 - MIR SINE MIR -1 261 57 351 225 12 0 chr1 190158987 190159067 -92034597 - L1ME4a LINE L1 -272 5849 5769 264 77 0 0 chr1 190159895 190159934 -92033730 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 259 226 0 48 chr1 190159942 190160004 -92033660 + L2 LINE L2 3251 3309 -4 22 80 0 0 chr1 190160442 190160492 -92033172 + AT_rich Low_complexity Low_complexity 1 50 0 913 193 0 17 chr1 190161211 190161387 -92032277 + MIR SINE MIR 90 262 0 254 283 0 17 chr1 190161896 190161956 -92031708 - L2 LINE L2 -1 3271 3213 266 255 0 43 chr1 190162738 190162832 -92030832 - L1MC4 LINE L1 -1339 6703 6614 1017 125 3 10 chr1 190162833 190162884 -92030780 + (TA)n Simple_repeat Simple_repeat 1 51 -581 2845 10 0 0 chr1 190162884 190163190 -92030474 + AluY SINE Alu 1 306 -5 1017 125 3 10 chr1 190163190 190163470 -92030194 + (TA)n Simple_repeat Simple_repeat 51 632 0 1544 152 11 41 chr1 190163901 190164335 -92029329 - L1MA9 LINE L1 -1 6311 5795 2150 158 134 8 chr1 190164408 190164788 -92028876 + MSTA LTR MaLR 1 428 0 10454 135 9 38 chr1 190164790 190166414 -92027250 + MSTA-int LTR MaLR 3 1579 -1 2026 166 147 8 chr1 190166417 190166791 -92026873 + MSTA LTR MaLR 3 428 0 1704 161 6 59 chr1 190166967 190167291 -92026373 + AluSx SINE Alu 5 311 -1 361 202 134 84 chr1 190167472 190167591 -92026073 - MLT1J LTR MaLR -295 186 27 1239 238 57 75 chr1 190167635 190168298 -92025366 - L2 LINE L2 -1 3312 2651 1809 181 26 34 chr1 190168323 190168738 -92024926 + MER66A LTR ERV1 27 438 -40 272 247 52 0 chr1 190168745 190168822 -92024842 - L2 LINE L2 -693 2621 2541 269 303 125 20 chr1 190169448 190169600 -92024064 + MIR SINE MIR 41 208 -54 626 228 81 0 chr1 190169799 190169922 -92023742 + FLAM_A SINE Alu 1 133 0 6839 85 30 1 chr1 190169924 190171749 -92021915 + L1PA11 LINE L1 4337 6174 0 187 301 62 62 chr1 190171844 190171957 -92021707 - L2 LINE L2 -10 3262 3150 232 250 0 16 chr1 190172870 190172934 -92020730 + L1ME LINE L1 5719 5781 -340 495 214 176 53 chr1 190172985 190173172 -92020492 + MER58C DNA MER1_type 1 210 -5 825 214 148 96 chr1 190173246 190173774 -92019890 - MLT1G LTR MaLR 0 590 16 854 260 19 10 chr1 190174024 190174232 -92019432 + MIR SINE MIR 17 226 -36 326 279 34 93 chr1 190174398 190174602 -92019062 + LTR67 LTR ERVL 366 557 0 203 338 0 0 chr1 190176264 190176332 -92017332 + MIR SINE MIR 144 211 -51 4266 102 42 44 chr1 190176403 190177068 -92016596 + L1P3 LINE L1 635 1298 -5163 7508 62 5 5 chr1 190177069 190178641 -92015023 + L1PA8 LINE L1 4614 6172 0 2512 54 0 29 chr1 190180196 190180512 -92013152 - AluY SINE Alu -4 307 1 333 237 31 10 chr1 190180725 190180822 -92012842 - MIR3 SINE MIR -1 207 109 1625 174 7 24 chr1 190180846 190181133 -92012531 + AluJo SINE Alu 1 282 -30 238 245 0 0 chr1 190181168 190181217 -92012447 - L2 LINE L2 0 3313 3265 290 226 188 8 chr1 190181475 190181608 -92012056 - MER103 DNA DNA -7 159 3 219 227 0 0 chr1 190181640 190181684 -92011980 + CT-rich Low_complexity Low_complexity 3 46 0 820 262 124 62 chr1 190182242 190182708 -92010956 + L2 LINE L2 2818 3312 -1 217 315 19 46 chr1 190183679 190183787 -92009877 + MIR SINE MIR 1 105 -157 467 260 59 83 chr1 190183956 190184210 -92009454 - L2 LINE L2 -25 3288 3041 306 341 48 36 chr1 190184460 190184627 -92009037 + L2 LINE L2 2509 2677 -637 250 236 14 0 chr1 190184930 190185002 -92008662 + LTR33A LTR ERVL 450 522 -1 2460 71 0 3 chr1 190186484 190186793 -92006871 - AluY SINE Alu -3 308 1 199 319 37 86 chr1 190187490 190187653 -92006011 + L3 LINE CR1 1377 1531 -46 239 312 55 37 chr1 190187818 190187927 -92005737 + MIR SINE MIR 34 144 -64 718 247 114 62 chr1 190188375 190188683 -92004981 + L2 LINE L2 2989 3312 -1 296 300 50 8 chr1 190190083 190190203 -92003461 + MIR SINE MIR 29 153 -55 210 354 103 11 chr1 190190422 190190597 -92003067 + L2 LINE L2 2922 3112 -160 15543 119 21 6 chr1 190191013 190193396 -92000268 - Tigger1 DNA MER2_type 0 2418 2 1155 285 46 81 chr1 190193401 190194141 -91999523 - MER21B LTR ERV1 -149 714 1 368 288 93 7 chr1 190194152 190194291 -91999373 - MIR SINE MIR -109 153 3 194 191 24 24 chr1 190194662 190194746 -91998918 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 208 324 0 28 chr1 190194880 190194951 -91998713 + C-rich Low_complexity Low_complexity 2 70 0 586 276 112 14 chr1 190195011 190195225 -91998439 - MIR SINE MIR -26 236 2 191 375 10 0 chr1 190195261 190195357 -91998307 + MIR SINE MIR 49 145 -117 220 313 71 36 chr1 190196140 190196252 -91997412 + L2 LINE L2 3154 3269 -3 281 275 109 36 chr1 190196416 190196554 -91997110 + MIR SINE MIR 3 150 -112 337 313 134 30 chr1 190196557 190196691 -91996973 - MER91A DNA MER1_type 0 196 49 652 315 43 16 chr1 190197872 190198126 -91995538 + MIR SINE MIR 2 262 0 349 292 0 0 chr1 190198383 190198472 -91995192 + MIR3 SINE MIR 119 207 -1 225 94 0 0 chr1 190199985 190200017 -91993647 + (CA)n Simple_repeat Simple_repeat 2 33 0 301 345 142 18 chr1 190202058 190202333 -91991331 + L2 LINE L2 3005 3313 0 233 261 37 67 chr1 190202565 190202699 -91990965 - MIR SINE MIR -45 217 88 481 272 64 8 chr1 190202921 190203046 -91990618 - MIR3 SINE MIR -21 187 56 215 331 119 25 chr1 190203082 190203242 -91990422 - MIR SINE MIR -78 184 10 478 283 75 13 chr1 190203710 190203869 -91989795 - MIR SINE MIR -80 182 14 207 0 0 0 chr1 190204965 190204988 -91988676 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 252 225 125 0 chr1 190205012 190205092 -91988572 + L2 LINE L2 3137 3226 -46 1056 256 157 26 chr1 190205506 190205932 -91987732 + L2 LINE L2 1382 1863 -1451 192 80 0 0 chr1 190205992 190206017 -91987647 + L2 LINE L2 1879 1903 -1411 353 281 0 65 chr1 190206018 190206157 -91987507 - MER94 DNA DNA 0 134 5 1088 254 214 36 chr1 190206161 190206936 -91986728 + L2 LINE L2 2403 3313 0 306 206 0 0 chr1 190207112 190207180 -91986484 - L1PB4 LINE L1 -5 6151 6084 397 266 166 30 chr1 190207228 190207566 -91986098 + L1ME4a LINE L1 5736 6119 -2 529 254 99 22 chr1 190208733 190208965 -91984699 - L1ME3 LINE L1 -225 5937 5688 232 207 52 0 chr1 190209161 190209219 -91984445 - MER69 DNA AcHobo -109 68 8 761 275 95 33 chr1 190210161 190211035 -91982629 - L1ME3 LINE L1 -459 5703 4756 21 36 0 0 chr1 190213411 190213439 -91980225 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 190213711 190213742 -91979922 + AT_rich Low_complexity Low_complexity 1 31 0 455 365 50 59 chr1 190213788 190214345 -91979319 + L1MEd LINE L1 9 560 -5559 360 94 0 0 chr1 190214544 190214597 -91979067 + (GA)n Simple_repeat Simple_repeat 2 54 0 2201 123 3 13 chr1 190214712 190215021 -91978643 + AluSx SINE Alu 1 306 -6 853 284 39 35 chr1 190215090 190215569 -91978095 + L1MEd LINE L1 948 1522 -968 1735 163 121 16 chr1 190215569 190215753 -91977911 - MSTA LTR MaLR 0 428 265 261 0 0 0 chr1 190215753 190215782 -91977882 + (GA)n Simple_repeat Simple_repeat 1 29 0 1735 163 121 16 chr1 190215782 190215984 -91977680 - MSTA LTR MaLR -163 265 1 853 284 39 35 chr1 190215984 190216106 -91977558 + L1MEd LINE L1 1522 1642 -848 2100 205 41 0 chr1 190216476 190216964 -91976700 + L1ME1 LINE L1 5318 5825 -341 1509 89 17 21 chr1 190216964 190217201 -91976463 + L1PA8 LINE L1 5937 6172 0 302 282 8 53 chr1 190217241 190217372 -91976292 + L1MC5 LINE L1 7609 7733 -228 739 209 74 71 chr1 190217377 190217435 -91976229 + L1ME1 LINE L1 5811 5867 -299 2172 60 3 70 chr1 190217435 190217760 -91975904 + AluY SINE Alu 1 305 0 739 209 74 71 chr1 190217760 190218050 -91975614 + L1ME1 LINE L1 5867 6161 -5 295 123 35 18 chr1 190218248 190218305 -91975359 - MER58 DNA MER1_type -2 2418 2361 244 297 88 11 chr1 190218310 190218401 -91975263 - MER58 DNA MER1_type -2147 273 176 321 242 92 33 chr1 190218516 190218636 -91975028 + L1ME LINE L1 2176 2302 -3827 264 341 45 0 chr1 190218699 190218787 -91974877 - MIR SINE MIR -168 94 3 333 0 0 0 chr1 190218957 190218994 -91974670 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr1 190219161 190219193 -91974471 + AT_rich Low_complexity Low_complexity 1 32 0 962 243 8 53 chr1 190219286 190219549 -91974115 + MIR SINE MIR 1 251 -11 439 326 175 11 chr1 190219578 190219949 -91973715 + L1ME LINE L1 4448 4879 -1250 347 287 83 26 chr1 190219970 190220200 -91973464 + MER112 DNA MER1_type 12 254 -6 2253 119 0 0 chr1 190220452 190220747 -91972917 + AluSx SINE Alu 1 295 -17 694 264 35 18 chr1 190220757 190221041 -91972623 + L1ME LINE L1 5238 5526 -623 319 303 76 8 chr1 190221784 190221903 -91971761 - L2 LINE L2 -5 3308 3182 613 261 14 112 chr1 190222199 190222414 -91971250 + MER91A DNA MER1_type 2 195 -1 501 252 184 14 chr1 190222625 190222772 -91970892 - MIR3 SINE MIR -16 192 21 410 317 45 40 chr1 190223477 190223676 -91969988 + MIR SINE MIR 24 223 -39 480 346 122 13 chr1 190224532 190224769 -91968895 - L3 LINE CR1 -3 1574 1312 522 282 51 26 chr1 190225051 190225246 -91968418 - L2 LINE L2 -19 3294 3095 319 277 8 25 chr1 190225264 190225383 -91968281 - L1M4 LINE L1 -988 5158 5042 403 183 0 29 chr1 190225389 190225493 -91968171 + CT-rich Low_complexity Low_complexity 2 102 0 226 281 16 0 chr1 190225631 190225695 -91967969 + (TA)n Simple_repeat Simple_repeat 1 65 0 329 320 20 30 chr1 190225696 190225996 -91967668 - L1M4 LINE L1 -1332 4814 4518 502 344 167 5 chr1 190226259 190226474 -91967190 + MIR SINE MIR 13 262 0 2025 259 56 61 chr1 190227639 190228423 -91965241 + L2 LINE L2 1641 2420 -894 7002 43 1 47 chr1 190228426 190229431 -91964233 - L1P LINE L1 -3028 3118 2160 * 11641 56 5 2 chr1 190229422 190230992 -91962672 - L1P LINE L1 -1430 4716 3143 4765 71 3 25 chr1 190230993 190231721 -91961943 + L1P LINE L1 4660 5371 -775 25 0 0 0 chr1 190232008 190232033 -91961631 + AT_rich Low_complexity Low_complexity 1 25 0 264 340 21 0 chr1 190233716 190233810 -91959854 - L2 LINE L2 -81 3232 3137 256 360 54 30 chr1 190234749 190234952 -91958712 - MIR SINE MIR -4 258 51 23 54 0 0 chr1 190235926 190235963 -91957701 + AT_rich Low_complexity Low_complexity 1 37 0 288 267 9 29 chr1 190236221 190236326 -91957338 - L1ME LINE L1 -480 5641 5539 399 343 64 17 chr1 190236859 190237092 -91956572 + L2 LINE L2 2628 2871 -443 349 323 73 0 chr1 190237357 190237481 -91956183 + L2 LINE L2 3181 3313 0 991 197 116 0 chr1 190237538 190237797 -91955867 + L1 LINE L1 5045 5333 -813 24592 57 3 5 chr1 190237798 190241940 -91951724 + L1PA5 LINE L1 2024 6153 -1 1540 275 45 62 chr1 190241940 190242863 -91950801 + L2 LINE L2 2414 3313 0 314 241 69 35 chr1 190243160 190243276 -91950388 + MIR SINE MIR 62 181 -81 231 282 86 69 chr1 190243571 190243788 -91949876 - MIR3 SINE MIR -50 212 1 195 287 35 23 chr1 190244601 190244688 -91948976 + L2 LINE L2 3226 3313 0 1210 149 0 11 chr1 190244743 190244931 -91948733 - AluSg/x SINE Alu 0 312 127 192 362 52 0 chr1 190245942 190246058 -91947606 + L2 LINE L2 3151 3272 0 271 270 27 0 chr1 190246431 190246505 -91947159 - L2 LINE L2 -298 2974 2899 889 240 50 45 chr1 190247731 190247973 -91945691 - MIR SINE MIR -6 256 14 188 318 166 26 chr1 190248218 190248369 -91945295 - L3 LINE CR1 -226 1351 1180 * 205 236 73 0 chr1 190248341 190248396 -91945268 + L2 LINE L2 54 112 -3202 495 33 0 0 chr1 190249183 190249244 -91944420 + (TG)n Simple_repeat Simple_repeat 1 61 0 327 85 0 0 chr1 190249254 190249301 -91944363 + (GA)n Simple_repeat Simple_repeat 2 48 0 475 297 75 29 chr1 190249552 190250033 -91943631 + L1ME4a LINE L1 5617 6119 -2 310 340 115 15 chr1 190250456 190250656 -91943008 - MIR SINE MIR -10 252 33 2455 184 59 16 chr1 190250951 190252453 -91941211 + L1MC1 LINE L1 4751 6333 0 275 314 130 11 chr1 190252499 190252684 -91940980 - LTR67 LTR ERVL -305 252 46 3579 164 7 52 chr1 190253477 190254273 -91939391 + L1MB1 LINE L1 5284 6042 -126 2874 184 17 6 chr1 190254269 190254931 -91938733 - L1PB1 LINE L1 -1265 4881 4213 * 2762 130 19 2 chr1 190254931 190256121 -91937543 + L1PB1 LINE L1 4892 6150 -1 836 99 21 28 chr1 190256130 190256271 -91937393 + L1MB1 LINE L1 6028 6167 -1 532 278 158 27 chr1 190257127 190257386 -91936278 - L2 LINE L2 0 3313 3021 467 164 0 0 chr1 190257880 190257953 -91935711 + AluJ/FLAM SINE Alu 1 73 -239 825 208 69 0 chr1 190258863 190259036 -91934628 - MER58A DNA MER1_type 0 224 40 493 82 0 82 chr1 190259109 190259194 -91934470 - MADE1 DNA Mariner -1 79 2 406 200 137 0 chr1 190259864 190259959 -91933705 + MER103 DNA DNA 2 109 -57 590 296 49 40 chr1 190260564 190260811 -91932853 + MIR SINE MIR 1 249 -13 321 261 80 58 chr1 190260838 190260967 -91932697 + L1ME4a LINE L1 5926 6062 -59 2415 69 0 0 chr1 190260967 190261270 -91932394 + AluY SINE Alu 1 303 -8 321 261 80 58 chr1 190261270 190261328 -91932336 + L1ME4a LINE L1 6062 6117 -4 340 258 125 17 chr1 190261679 190261799 -91931865 + MLT1J2 LTR MaLR 193 325 -125 499 274 81 22 chr1 190262011 190262234 -91931430 - L1ME LINE L1 -512 5658 5423 653 297 74 7 chr1 190262341 190262880 -91930784 + L1ME LINE L1 4756 5330 -816 1384 283 91 26 chr1 190263227 190264023 -91929641 - L2 LINE L2 -4 3309 2458 5271 141 38 20 chr1 190264339 190265504 -91928160 - L1MA8 LINE L1 0 6291 5108 313 336 76 0 chr1 190265602 190265721 -91927943 - L2 LINE L2 -5 3308 3181 366 345 65 13 chr1 190265986 190266218 -91927446 - L2 LINE L2 -443 2871 2628 305 276 41 0 chr1 190266777 190266875 -91926789 + L1ME LINE L1 5562 5663 -458 25 31 0 0 chr1 190267695 190267727 -91925937 + AT_rich Low_complexity Low_complexity 1 32 0 205 366 59 30 chr1 190268131 190268333 -91925331 + MIR SINE MIR 51 258 -4 235 365 21 0 chr1 190270842 190270938 -91922726 + L2 LINE L2 3137 3234 -79 23 54 0 0 chr1 190271938 190271975 -91921689 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 190272620 190272645 -91921019 + AT_rich Low_complexity Low_complexity 1 25 0 305 346 87 0 chr1 190273966 190274093 -91919571 - MIR SINE MIR -124 138 1 497 193 147 18 chr1 190274186 190274295 -91919369 - L2 LINE L2 0 3313 3191 533 296 51 86 chr1 190274325 190274823 -91918841 - L2 LINE L2 -4 3268 2791 238 296 130 25 chr1 190275739 190275901 -91917763 - L2 LINE L2 -197 3075 2897 189 74 0 0 chr1 190277324 190277351 -91916313 + (TC)n Simple_repeat Simple_repeat 2 28 0 661 247 87 46 chr1 190277376 190277595 -91916069 + MIR SINE MIR 35 262 0 2863 88 0 3 chr1 190278330 190278706 -91914958 - THE1C LTR MaLR 0 375 1 341 318 73 93 chr1 190278777 190279132 -91914532 + L2 LINE L2 2917 3264 -8 367 261 52 15 chr1 190279276 190279410 -91914254 + MER117 DNA MER1_type 4 142 -55 223 303 156 33 chr1 190279654 190279776 -91913888 + L2 LINE L2 3160 3296 -17 544 191 0 16 chr1 190280886 190281012 -91912652 + L1ME3A LINE L1 6046 6169 -1 363 350 69 0 chr1 190283522 190283682 -91909982 + MIR SINE MIR 25 195 -67 * 999 262 82 56 chr1 190283676 190283774 -91909890 - L2 LINE L2 -64 3249 3155 302 0 26 0 chr1 190283774 190283812 -91909852 + (CA)n Simple_repeat Simple_repeat 2 40 0 999 262 82 56 chr1 190283812 190284395 -91909269 - L2 LINE L2 -158 3155 2538 2840 229 29 8 chr1 190284415 190285080 -91908584 - L1MB7 LINE L1 -10 6174 5496 472 348 59 22 chr1 190285082 190285355 -91908309 - L2 LINE L2 -1762 1552 1270 1055 269 45 102 chr1 190285367 190286081 -91907583 - L2 LINE L2 -2227 1087 415 207 171 0 0 chr1 190286295 190286330 -91907334 + (CA)n Simple_repeat Simple_repeat 2 36 0 7348 57 37 0 chr1 190286523 190287196 -91906468 - L1PA7 LINE L1 -2 6152 5471 2008 138 0 3 chr1 190287196 190287494 -91906170 - AluSg SINE Alu -13 297 1 7348 57 37 0 chr1 190287494 190287798 -91905866 - L1PA7 LINE L1 -683 5471 5180 5217 86 39 1 chr1 190287798 190288518 -91905146 - L1P LINE L1 -1224 4922 4176 234 0 0 0 chr1 190291241 190291267 -91902397 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2130 86 8 0 chr1 190291805 190292133 -91901531 + AluSq SINE Alu 14 343 0 22 0 0 0 chr1 190292941 190292963 -91900701 + AT_rich Low_complexity Low_complexity 1 22 0 338 217 48 36 chr1 190293191 190293274 -91900390 + MER94 DNA DNA 12 95 -39 427 306 61 25 chr1 190293983 190294179 -91899485 - MIR SINE MIR -59 203 1 362 173 74 12 chr1 190295473 190295554 -91898110 - L1ME LINE L1 -521 5600 5515 239 164 36 0 chr1 190295620 190295675 -91897989 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 546 207 85 49 chr1 190295886 190296050 -91897614 - MLT1J LTR MaLR 0 511 342 278 279 126 0 chr1 190296178 190296289 -91897375 - MLT1J LTR MaLR -380 131 7 3465 192 34 13 chr1 190297257 190297972 -91895692 + L1MB4 LINE L1 5451 6180 0 2247 166 31 42 chr1 190298003 190298454 -91895210 + MSTB2 LTR MaLR 12 457 0 185 289 0 0 chr1 190298609 190298654 -91895010 - MIR SINE MIR -129 79 35 293 260 139 64 chr1 190299065 190299238 -91894426 - MIR SINE MIR -69 193 8 438 200 168 0 chr1 190299684 190299779 -91893885 - MER81 DNA DNA -3 111 1 426 252 50 31 chr1 190301862 190301998 -91891666 + MIR SINE MIR 16 152 -67 1070 230 18 5 chr1 190302000 190302222 -91891442 + MIR SINE MIR 13 237 -25 778 190 70 60 chr1 190302535 190302679 -91890985 - LTR37A LTR ERV1 0 426 285 333 0 0 0 chr1 190302679 190302716 -91890948 + (CA)n Simple_repeat Simple_repeat 2 38 0 778 190 70 60 chr1 190302716 190302751 -91890913 - LTR37A LTR ERV1 -141 285 252 1016 26 0 0 chr1 190302751 190302864 -91890800 + L1PA5 LINE L1 6040 6152 -2 778 190 70 60 chr1 190302864 190303141 -91890523 - LTR37A LTR ERV1 -174 252 35 212 244 0 0 chr1 190305337 190305382 -91888282 + G-rich Low_complexity Low_complexity 3 47 0 250 269 129 0 chr1 190305600 190305693 -91887971 - MER5A DNA MER1_type -77 112 8 197 204 45 0 chr1 190305785 190305829 -91887835 + L2 LINE L2 3267 3312 -1 305 340 50 38 chr1 190305948 190306107 -91887557 - MIR SINE MIR -74 188 28 308 147 44 15 chr1 190306783 190306851 -91886813 - MER92C LTR ERV1 -1 553 484 374 176 15 169 chr1 190306962 190307098 -91886566 - MER92B LTR ERV1 -521 115 1 595 213 65 93 chr1 190307217 190307284 -91886380 - MER63A DNA MER1_type -1478 210 143 2349 194 75 7 chr1 190307284 190307738 -91885926 + MER31A LTR ERV1 1 485 0 595 213 65 93 chr1 190307738 190307886 -91885778 - MER63A DNA MER1_type -1545 143 1 1920 148 0 17 chr1 190308621 190308918 -91884746 - AluSx SINE Alu -20 292 1 207 333 56 0 chr1 190309061 190309133 -91884531 - L2 LINE L2 -258 3014 2939 188 378 55 8 chr1 190309498 190309625 -91884039 - L2 LINE L2 -798 2516 2384 24 32 0 0 chr1 190309980 190310011 -91883653 + AT_rich Low_complexity Low_complexity 1 31 0 479 325 111 29 chr1 190310342 190310758 -91882906 + L2 LINE L2 1441 1890 -1424 1010 279 98 6 chr1 190310760 190311075 -91882589 - L2 LINE L2 -557 2757 2414 3787 259 140 26 chr1 190311137 190312584 -91881080 - L2 LINE L2 -526 2788 1177 264 309 103 15 chr1 190313163 190313299 -91880365 + MIR SINE MIR 107 254 -8 22 35 0 0 chr1 190313316 190313345 -91880319 + AT_rich Low_complexity Low_complexity 1 29 0 246 233 0 0 chr1 190313439 190313482 -91880182 + U6 snRNA snRNA 49 91 -16 443 323 30 12 chr1 190313559 190313723 -91879941 + MIR SINE MIR 96 262 0 307 240 33 91 chr1 190314762 190314883 -91878781 + MIR SINE MIR 49 162 -100 2184 90 10 23 chr1 190315400 190315710 -91877954 - AluSc SINE Alu -3 306 1 219 333 22 7 chr1 190315794 190315929 -91877735 + GA-rich Low_complexity Low_complexity 2 138 0 252 59 0 0 chr1 190316381 190316415 -91877249 + (T)n Simple_repeat Simple_repeat 1 34 0 453 314 59 13 chr1 190317136 190317289 -91876375 - MIR SINE MIR -74 188 29 423 349 16 21 chr1 190317927 190318116 -91875548 - MER5A DNA MER1_type -1 188 1 198 323 94 42 chr1 190318163 190318259 -91875405 + L2 LINE L2 3182 3282 -31 2005 23 0 0 chr1 190319496 190319715 -91873949 - AluYa5 SINE Alu -7 304 86 274 226 83 12 chr1 190320217 190320301 -91873363 - L2 LINE L2 -983 2331 2242 246 321 112 22 chr1 190320371 190320595 -91873069 + L2 LINE L2 1981 2224 -1090 515 324 113 0 chr1 190320608 190320750 -91872914 + L2 LINE L2 3115 3272 0 539 345 93 8 chr1 190322144 190322532 -91871132 + L3 LINE CR1 1132 1552 -25 518 259 64 38 chr1 190324240 190324478 -91869186 - MIR SINE MIR -1 261 20 415 250 125 33 chr1 190324659 190324843 -91868821 - L2 LINE L2 0 3313 3113 276 196 0 0 chr1 190324900 190324956 -91868708 + L1M4 LINE L1 4720 4775 -1371 285 174 72 0 chr1 190325084 190325153 -91868511 + L1M4 LINE L1 4786 4859 -1287 1080 218 17 13 chr1 190325513 190325747 -91867917 + L1M4 LINE L1 4848 5082 -1064 403 317 11 43 chr1 190325905 190326091 -91867573 - L2 LINE L2 -600 2714 2535 275 318 55 18 chr1 190326132 190326286 -91867378 - MIR SINE MIR -63 145 40 228 143 0 0 chr1 190327863 190327905 -91865759 + (CA)n Simple_repeat Simple_repeat 2 43 0 1998 196 81 18 chr1 190328100 190328534 -91865130 + MER65C LTR ERV1 1 461 0 701 284 74 76 chr1 190329604 190330090 -91863574 + MLT1L LTR MaLR 1 485 -130 774 109 27 54 chr1 190330143 190330290 -91863374 - L1MA9 LINE L1 0 6312 6170 1168 88 6 11 chr1 190330291 190330297 -91863367 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1168 88 6 11 chr1 190330297 190330478 -91863186 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 305 151 19 0 chr1 190330562 190330615 -91863049 - L1MA9 LINE L1 -164 6148 6095 209 264 69 69 chr1 190331156 190331300 -91862364 + L2 LINE L2 3169 3312 -1 247 213 148 0 chr1 190332242 190332303 -91861361 - MER103 DNA DNA -80 86 17 282 260 198 0 chr1 190332355 190332451 -91861213 - L2 LINE L2 -1 3312 3198 2247 152 23 6 chr1 190334072 190334421 -91859243 - THE1A LTR MaLR 0 355 1 222 306 56 46 chr1 190335012 190335120 -91858544 + L2 LINE L2 3195 3303 -10 395 303 82 87 chr1 190335431 190335810 -91857854 - L2 LINE L2 0 3272 2896 1964 227 22 59 chr1 190335962 190336596 -91857068 - MLT2B3 LTR ERVL -1 553 1 462 193 84 17 chr1 190337429 190337548 -91856116 + MIR SINE MIR 88 214 -48 499 211 79 0 chr1 190337557 190337671 -91855993 + L2 LINE L2 3191 3313 0 425 353 43 89 chr1 190337911 190338396 -91855268 + L2 LINE L2 2807 3269 -3 604 312 42 21 chr1 190338414 190338651 -91855013 + MIR SINE MIR 20 261 -1 1913 142 16 7 chr1 190339376 190339685 -91853979 + AluSx SINE Alu 1 312 0 264 216 54 14 chr1 190339894 190339968 -91853696 - MIR SINE MIR -89 173 97 655 257 30 25 chr1 190340384 190340621 -91853043 + LTR16A LTR ERVL 32 269 -181 569 312 50 9 chr1 190341536 190341757 -91851907 - MIR SINE MIR -13 249 20 447 297 49 11 chr1 190342004 190342189 -91851475 - MIR SINE MIR -51 211 20 1535 75 5 0 chr1 190342312 190342529 -91851135 - AluSc SINE Alu 0 310 93 646 150 265 0 chr1 190342763 190342910 -91850754 - L1PA16 LINE L1 -9 6157 5972 352 284 89 6 chr1 190343639 190343808 -91849856 - MIR SINE MIR -16 246 64 188 319 172 24 chr1 190344389 190344558 -91849106 - MIR3 SINE MIR -7 201 8 1338 227 58 58 chr1 190345417 190345914 -91847750 - MLT1D LTR MaLR -8 497 1 709 317 60 14 chr1 190346335 190346682 -91846982 + MLT1J1 LTR MaLR 63 425 -21 932 178 11 5 chr1 190347262 190347453 -91846211 + MER96B DNA MER1_type? 1 192 -225 306 300 120 20 chr1 190347592 190347692 -91845972 - L2 LINE L2 -1 3312 3203 457 320 0 0 chr1 190347704 190347857 -91845807 - MLT1I LTR MaLR -255 154 2 755 242 99 56 chr1 190348090 190348482 -91845182 - MLT1C LTR MaLR 0 467 59 23 33 0 0 chr1 190349686 190349716 -91843948 + AT_rich Low_complexity Low_complexity 1 30 0 1391 163 4 4 chr1 190349778 190350042 -91843622 + L1MA6 LINE L1 5407 5670 -630 2413 155 28 28 chr1 190350042 190350098 -91843566 + Tigger1 DNA MER2_type 1 56 -2362 2409 88 0 0 chr1 190350098 190350405 -91843259 - AluSx SINE Alu -5 307 1 2413 155 28 28 chr1 190350405 190350805 -91842859 + Tigger1 DNA MER2_type 55 457 -1961 15979 27 1 0 chr1 190350825 190353465 -91840199 - L1PA3 LINE L1 0 6155 3493 15833 29 10 1 chr1 190353566 190356125 -91837539 - L1PA3 LINE L1 -149 6006 3426 11829 127 10 14 chr1 190356125 190358100 -91835564 + Tigger1 DNA MER2_type 450 2417 -1 3600 140 11 6 chr1 190358100 190358722 -91834942 + L1MA6 LINE L1 5668 6292 -8 906 114 8 0 chr1 190359063 190359194 -91834470 - FLAM_C SINE Alu -1 142 11 326 300 0 0 chr1 190359502 190359592 -91834072 + MIR SINE MIR 94 183 -79 230 319 77 11 chr1 190359683 190359774 -91833890 + L3 LINE CR1 1478 1574 -3 1949 205 55 9 chr1 190361634 190362013 -91831651 + MLT2B1 LTR ERVL 82 483 -37 414 0 0 0 chr1 190362013 190362059 -91831605 + (TA)n Simple_repeat Simple_repeat 2 47 0 1949 205 55 9 chr1 190362059 190362099 -91831565 + MLT2B1 LTR ERVL 483 520 0 1121 199 78 59 chr1 190362102 190362210 -91831454 + MLT2C1 LTR ERVL 38 142 -255 1969 157 0 0 chr1 190362210 190362497 -91831167 + AluSx SINE Alu 1 287 -25 1121 199 78 59 chr1 190362497 190362694 -91830970 + MLT2C1 LTR ERVL 142 349 -48 2023 208 174 85 chr1 190362824 190363627 -91830037 + MLT1-int LTR MaLR 8 882 -489 256 254 0 0 chr1 190363832 190363887 -91829777 + MLT1-int LTR MaLR 959 1013 -358 613 233 161 5 chr1 190363887 190364080 -91829584 + MLT1D LTR MaLR 279 501 -4 348 218 0 39 chr1 190364140 190364218 -91829446 - L2 LINE L2 -12 3301 3227 2369 43 0 33 chr1 190364427 190364758 -91828906 + AluY SINE Alu 1 311 0 298 332 139 9 chr1 190364891 190365114 -91828550 - L2 LINE L2 -814 2500 2249 209 346 93 40 chr1 190365147 190365500 -91828164 - L2 LINE L2 -1501 1813 1442 1233 210 107 32 chr1 190365522 190365869 -91827795 - MLT1F LTR MaLR 0 542 170 242 247 71 24 chr1 190366533 190366618 -91827046 + MER81 DNA DNA 26 114 0 408 192 158 17 chr1 190368634 190368754 -91824910 + MIR SINE MIR 53 189 -73 2134 93 16 42 chr1 190368980 190369291 -91824373 - AluY SINE Alu -8 303 1 210 303 20 99 chr1 190369686 190369838 -91823826 + L2 LINE L2 3158 3297 -16 312 318 42 47 chr1 190369989 190370181 -91823483 - MIR SINE MIR -70 192 2 24417 141 22 14 chr1 190372101 190378454 -91815210 - L1PA8 LINE L1 -3 6484 1 355 340 61 0 chr1 190379162 190379309 -91814355 + MIR SINE MIR 20 175 -87 324 352 40 0 chr1 190379989 190380114 -91813550 - L2 LINE L2 -4 3268 3139 349 298 128 49 chr1 190380216 190380481 -91813183 - L2 LINE L2 -435 2879 2594 204 292 0 0 chr1 190380556 190380604 -91813060 - L2 LINE L2 -4 3309 3262 36 0 0 0 chr1 190381534 190381570 -91812094 + AT_rich Low_complexity Low_complexity 1 36 0 336 198 23 81 chr1 190381576 190381662 -91812002 - L2 LINE L2 0 3272 3192 457 317 68 10 chr1 190381854 190382059 -91811605 + MIR SINE MIR 24 240 -22 286 234 96 62 chr1 190383174 190383330 -91810334 + MIR SINE MIR 31 192 -65 205 306 74 50 chr1 190383408 190383529 -91810135 + MIR3 SINE MIR 1 124 -84 349 253 121 0 chr1 190384623 190384714 -91808950 - L2 LINE L2 -1 3312 3211 286 361 0 19 chr1 190385237 190385345 -91808319 - L2 LINE L2 -4 3309 3204 669 274 127 0 chr1 190387393 190387605 -91806059 - MIR SINE MIR -11 251 13 214 268 18 0 chr1 190387613 190387669 -91805995 + L2 LINE L2 2992 3048 -224 294 319 80 14 chr1 190387977 190388115 -91805549 - MIR3 SINE MIR -5 203 57 198 296 34 23 chr1 190389154 190389242 -91804422 + L2 LINE L2 3184 3272 0 1939 153 0 7 chr1 190390811 190391111 -91802553 + AluJb SINE Alu 1 298 -14 281 271 241 8 chr1 190391528 190391661 -91802003 - MIR SINE MIR -31 231 68 708 185 162 6 chr1 190392425 190392598 -91801066 + MER20 DNA MER1_type 16 215 -4 22 0 0 0 chr1 190392779 190392801 -91800863 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 190393418 190393442 -91800222 + AT_rich Low_complexity Low_complexity 1 24 0 2126 163 14 8 chr1 190393908 190394271 -91799393 + MLT1A1 LTR MaLR 1 365 0 309 26 0 0 chr1 190394722 190394760 -91798904 + (TG)n Simple_repeat Simple_repeat 2 39 0 490 238 95 52 chr1 190395282 190395513 -91798151 - MER112 DNA MER1_type -6 254 14 271 308 67 10 chr1 190395529 190395633 -91798031 + L2 LINE L2 3190 3299 -14 2228 121 0 0 chr1 190396444 190396742 -91796922 - AluSx SINE Alu -13 299 2 926 72 0 0 chr1 190398282 190398407 -91795257 + AluY SINE Alu 186 310 -1 197 33 33 0 chr1 190398413 190398443 -91795221 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr1 190398603 190398625 -91795039 + AT_rich Low_complexity Low_complexity 1 22 0 2088 125 60 28 chr1 190399569 190399922 -91793742 + THE1B LTR MaLR 1 364 0 203 232 296 21 chr1 190400906 190401048 -91792616 + MIR SINE MIR 20 200 -62 22 0 0 0 chr1 190401067 190401089 -91792575 + AT_rich Low_complexity Low_complexity 1 22 0 2577 102 19 11 chr1 190401407 190401778 -91791886 + THE1C LTR MaLR 2 375 0 1309 196 75 39 chr1 190401779 190402111 -91791553 + MER2 DNA MER2_type 1 344 0 774 62 86 23 chr1 190402400 190402528 -91791136 - L1PA5 LINE L1 0 6154 6019 2329 91 0 31 chr1 190404831 190405151 -91788513 - AluY SINE Alu -1 310 1 210 280 53 53 chr1 190405888 190405963 -91787701 - L2 LINE L2 -4 3309 3235 203 245 0 38 chr1 190406823 190406876 -91786788 + GA-rich Low_complexity Low_complexity 1 51 0 40 0 0 0 chr1 190407551 190407591 -91786073 + AT_rich Low_complexity Low_complexity 1 40 0 311 326 11 34 chr1 190407727 190407905 -91785759 + MIR3 SINE MIR 20 193 -15 436 254 25 62 chr1 190408389 190408633 -91785031 - HAL1b LINE L1 -111 1237 1003 358 248 29 7 chr1 190409343 190409480 -91784184 - HAL1b LINE L1 -195 1153 1014 21 0 0 0 chr1 190409990 190410011 -91783653 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chr1 190410055 190410090 -91783574 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6747 91 0 4 chr1 190410373 190411611 -91782053 - L1PA8 LINE L1 -4 6168 4932 554 260 111 0 chr1 190412437 190412618 -91781046 + MIR SINE MIR 6 206 -56 217 302 0 12 chr1 190413886 190413972 -91779692 + MIR3 SINE MIR 4 88 -120 530 240 10 75 chr1 190416289 190416489 -91777175 - MIR SINE MIR 0 262 76 306 0 0 0 chr1 190416681 190416715 -91776949 + (CA)n Simple_repeat Simple_repeat 2 35 0 264 301 29 10 chr1 190417524 190417627 -91776037 + MIR3 SINE MIR 99 203 -5 699 170 150 50 chr1 190417661 190417861 -91775803 - L1MD3 LINE L1 0 7995 7776 651 231 144 31 chr1 190418242 190418498 -91775166 - L2 LINE L2 0 3313 3029 594 75 19 28 chr1 190419012 190419119 -91774545 + (TTTCC)n Simple_repeat Simple_repeat 4 109 0 199 173 39 0 chr1 190419140 190419192 -91774472 + CT-rich Low_complexity Low_complexity 2 55 0 323 305 53 13 chr1 190420302 190420453 -91773211 - MIR3 SINE MIR -33 175 19 368 277 208 15 chr1 190421038 190421240 -91772424 + MIR SINE MIR 21 261 -1 1957 153 3 6 chr1 190421357 190421670 -91771994 - AluJo SINE Alu 0 312 1 379 282 26 0 chr1 190422195 190422312 -91771352 - MER5C DNA MER1_type 0 324 205 280 252 75 9 chr1 190422338 190422445 -91771219 - MER5C DNA MER1_type -205 119 6 2793 174 94 103 chr1 190423802 190424439 -91769225 - L1ME1 LINE L1 0 6166 5537 2592 68 0 0 chr1 190424439 190424748 -91768916 + AluY SINE Alu 1 309 -2 2793 174 94 103 chr1 190424748 190424961 -91768703 - L1ME1 LINE L1 -629 5537 5324 373 315 34 17 chr1 190425025 190425203 -91768461 + MER5A DNA MER1_type 7 187 -2 309 26 0 0 chr1 190425365 190425403 -91768261 + (TG)n Simple_repeat Simple_repeat 2 39 0 310 337 22 28 chr1 190425600 190425778 -91767886 + MER5B DNA MER1_type 1 177 -1 23 0 0 0 chr1 190425789 190425812 -91767852 + AT_rich Low_complexity Low_complexity 1 23 0 957 217 22 0 chr1 190426599 190426783 -91766881 + MER5A DNA MER1_type 2 189 0 231 217 0 0 chr1 190426992 190427052 -91766612 + CT-rich Low_complexity Low_complexity 1 60 0 3652 160 9 39 chr1 190427053 190427753 -91765911 - L1MB8 LINE L1 -10 6168 5490 242 318 12 24 chr1 190428588 190428673 -91764991 - MIR SINE MIR -22 240 157 1225 152 5 21 chr1 190428882 190429073 -91764591 - MER20 DNA MER1_type -31 188 1 211 217 0 87 chr1 190429092 190429161 -91764503 + MIR SINE MIR 118 180 -82 213 182 0 0 chr1 190429611 190429644 -91764020 + G-rich Low_complexity Low_complexity 3 35 0 225 330 22 0 chr1 190430182 190430273 -91763391 - MIR SINE MIR -110 152 60 278 258 50 99 chr1 190430749 190430865 -91762799 + MER5A DNA MER1_type 15 120 -69 2287 78 11 0 chr1 190430865 190431147 -91762517 - AluSc SINE Alu -22 287 3 278 258 50 99 chr1 190431147 190431212 -91762452 + MER5A DNA MER1_type 120 187 -2 226 203 0 94 chr1 190431720 190431784 -91761880 + MIR SINE MIR 172 229 -33 1156 271 108 23 chr1 190431825 190432305 -91761359 + LTR33 LTR ERVL 1 521 0 211 273 91 0 chr1 190432795 190432861 -91760803 - MIR SINE MIR -116 146 75 358 301 6 38 chr1 190432979 190433162 -91760502 + L2 LINE L2 3122 3298 -15 1517 174 3 61 chr1 190433337 190433483 -91760181 + AluJo SINE Alu 1 154 -158 2439 87 0 0 chr1 190433483 190433783 -91759881 + AluY SINE Alu 1 300 -11 1517 174 3 61 chr1 190433783 190433963 -91759701 + AluJo SINE Alu 154 308 -4 186 333 29 48 chr1 190434052 190434157 -91759507 + L2 LINE L2 3168 3270 -2 207 0 0 0 chr1 190434565 190434588 -91759076 + (TG)n Simple_repeat Simple_repeat 2 24 0 1359 242 63 27 chr1 190434891 190435338 -91758326 + MLT1C LTR MaLR 1 463 -4 479 288 85 7 chr1 190435893 190436046 -91757618 + MIR SINE MIR 83 247 -15 581 273 62 10 chr1 190436416 190436610 -91757054 - MIR SINE MIR -31 231 28 553 246 49 0 chr1 190437871 190437993 -91755671 + MIR3 SINE MIR 76 203 -5 325 289 25 80 chr1 190438166 190438405 -91755259 + L2 LINE L2 2869 3094 -178 12875 28 0 1 chr1 190438508 190440773 -91752891 - L1PA4 LINE L1 0 6155 3860 6515 34 0 4 chr1 190440773 190441617 -91752047 + L1PA4 LINE L1 3005 3845 -2301 603 75 0 0 chr1 190441632 190441712 -91751952 - MADE1 DNA Mariner 0 80 1 310 319 50 25 chr1 190441712 190441820 -91751844 + L2 LINE L2 3189 3302 -11 2321 86 11 46 chr1 190442704 190442893 -91750771 - L1PB1 LINE L1 -1 6150 5956 284 0 77 19 chr1 190442893 190442945 -91750719 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1480 124 0 0 chr1 190442945 190443147 -91750517 - AluSg/x SINE Alu -28 284 83 2321 86 11 46 chr1 190443147 190443329 -91750335 - L1PB1 LINE L1 -193 5958 5791 291 157 0 0 chr1 190443329 190443380 -91750284 + (TG)n Simple_repeat Simple_repeat 1 51 0 331 303 0 0 chr1 190443380 190443469 -91750195 + L1MC4 LINE L1 6615 6703 -1339 3265 155 19 16 chr1 190443488 190444719 -91748945 - L1P5 LINE L1 -360 5791 4567 489 256 121 29 chr1 190444842 190445049 -91748615 + MIR SINE MIR 37 262 0 482 264 60 30 chr1 190445231 190445398 -91748266 + MIR SINE MIR 89 260 -2 1992 134 21 0 chr1 190446633 190446917 -91746747 - AluSg1 SINE Alu -19 290 1 2767 16 0 0 chr1 190447508 190447816 -91745848 - AluYb8 SINE Alu -10 308 1 188 333 71 10 chr1 190448497 190448596 -91745068 - MIR3 SINE MIR -15 193 89 199 125 50 0 chr1 190449023 190449063 -91744601 + L2 LINE L2 3271 3312 -1 256 335 196 10 chr1 190449371 190449580 -91744084 - MIR SINE MIR -11 251 4 437 336 51 5 chr1 190450287 190450504 -91743160 - MIR SINE MIR -33 229 3 281 241 98 30 chr1 190450920 190451048 -91742616 + MIR SINE MIR 5 138 -70 220 250 33 17 chr1 190451312 190451372 -91742292 + MIR SINE MIR 90 150 -112 296 240 10 39 chr1 190451502 190451606 -91742058 + L2 LINE L2 3152 3252 -61 1044 299 53 15 chr1 190451622 190452033 -91741631 + LTR16A LTR ERVL 17 443 -7 545 254 35 66 chr1 190452997 190453194 -91740470 - MIR SINE MIR -25 237 47 665 254 97 45 chr1 190453636 190454100 -91739564 + L1MEd LINE L1 565 1052 -5067 225 221 0 29 chr1 190454141 190454209 -91739455 + L1MEd LINE L1 1191 1256 -4863 2097 110 0 4 chr1 190454894 190455175 -91738489 + AluSq SINE Alu 1 280 -33 225 0 0 0 chr1 190455175 190455200 -91738464 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2731 96 3 3 chr1 190455565 190455929 -91737735 - THE1B LTR MaLR 0 364 1 678 231 62 20 chr1 190455979 190456174 -91737490 + MIR SINE MIR 49 251 -11 182 316 134 59 chr1 190456597 190456850 -91736814 + L3 LINE CR1 124 395 -1182 213 343 77 35 chr1 190457098 190457241 -91736423 + L3 LINE CR1 716 864 -713 445 329 24 6 chr1 190457331 190457498 -91736166 + MIR SINE MIR 15 184 -78 733 311 156 41 chr1 190457875 190458626 -91735038 + L2 LINE L2 1979 2818 -496 526 254 65 14 chr1 190458626 190458764 -91734900 - MER5B DNA MER1_type 0 178 34 1118 221 82 8 chr1 190458999 190459375 -91734289 - Charlie4a DNA MER1_type -45 463 60 24 32 0 0 chr1 190459529 190459560 -91734104 + AT_rich Low_complexity Low_complexity 1 31 0 342 370 39 35 chr1 190459800 190459912 -91733752 + MIR SINE MIR 5 115 -147 1885 157 7 3 chr1 190459912 190460212 -91733452 - AluJb SINE Alu -11 301 1 342 370 39 35 chr1 190460212 190460356 -91733308 + MIR SINE MIR 115 262 0 847 80 0 0 chr1 190460918 190461030 -91732634 + L1MA2 LINE L1 6187 6298 -6 24 0 0 0 chr1 190461030 190461054 -91732610 + AT_rich Low_complexity Low_complexity 1 24 0 383 219 29 29 chr1 190461179 190461284 -91732380 + MIR SINE MIR 47 151 -111 22 99 0 0 chr1 190461308 190461379 -91732285 + AT_rich Low_complexity Low_complexity 1 71 0 2320 114 0 0 chr1 190462600 190462907 -91730757 - AluSg SINE Alu -3 307 1 540 336 34 20 chr1 190463046 190463454 -91730210 - L1MC/D LINE L1 -2082 5726 5313 4331 71 13 30 chr1 190463646 190464254 -91729410 + L1PA7 LINE L1 5557 6154 0 2203 96 14 0 chr1 190464256 190464547 -91729117 + AluY SINE Alu 1 295 -16 45 19 0 0 chr1 190464843 190464895 -91728769 + AT_rich Low_complexity Low_complexity 1 52 0 497 156 111 0 chr1 190464922 190465057 -91728607 + MER5C DNA MER1_type 173 322 -2 1073 221 23 0 chr1 190466363 190466580 -91727084 + MER58A DNA MER1_type 1 222 -2 361 258 17 0 chr1 190469039 190469159 -91724505 + (TA)n Simple_repeat Simple_repeat 2 123 0 457 200 58 17 chr1 190470752 190470831 -91722833 + L1MB4 LINE L1 6056 6143 -37 4546 131 6 6 chr1 190470831 190471562 -91722102 + L1MA5A LINE L1 5564 6294 -3 457 200 58 17 chr1 190471562 190471602 -91722062 + L1MB4 LINE L1 6143 6180 0 220 374 46 53 chr1 190471619 190471750 -91721914 - L2 LINE L2 -71 3201 3072 22 35 0 0 chr1 190472033 190472062 -91721602 + AT_rich Low_complexity Low_complexity 1 29 0 420 168 168 0 chr1 190472062 190472157 -91721507 - MER96 DNA MER1_type? -18 157 47 196 310 0 0 chr1 190472260 190472318 -91721346 + L2 LINE L2 3244 3301 -12 808 264 89 9 chr1 190472526 190472852 -91720812 - L1MEc LINE L1 -5222 1174 823 259 243 54 54 chr1 190473645 190473756 -91719908 + L1ME LINE L1 6 116 -5954 378 311 81 77 chr1 190474090 190474521 -91719143 + L2 LINE L2 2539 2971 -343 615 260 23 17 chr1 190474786 190474959 -91718705 - MER45A DNA AcHobo -1 177 4 241 274 16 0 chr1 190475058 190475120 -91718544 - L2 LINE L2 -4 3309 3247 415 327 114 50 chr1 190475187 190475845 -91717819 + L2 LINE L2 1467 2166 -1148 619 194 3 17 chr1 190475845 190475982 -91717682 + LTR16A LTR ERVL 343 450 0 467 269 84 0 chr1 190476311 190476430 -91717234 - L2 LINE L2 -3 3310 3182 248 420 33 7 chr1 190476669 190476943 -91716721 + L2 LINE L2 2804 3084 -188 200 141 47 59 chr1 190478120 190478205 -91715459 + (TTTAA)n Simple_repeat Simple_repeat 1 84 0 290 289 47 39 chr1 190478300 190478428 -91715236 + L2 LINE L2 2304 2432 -882 393 329 20 71 chr1 190478474 190478810 -91714854 + L2 LINE L2 2694 3052 -220 2180 116 0 10 chr1 190479193 190479487 -91714177 + AluSg SINE Alu 1 291 -19 289 299 0 34 chr1 190479616 190479733 -91713931 - MIR SINE MIR -47 215 103 1780 148 6 46 chr1 190479745 190479860 -91713804 + AluJb SINE Alu 1 119 -193 2786 10 0 0 chr1 190479860 190480163 -91713501 - AluYa5 SINE Alu -8 303 1 1780 148 6 46 chr1 190480163 190480372 -91713292 + AluJb SINE Alu 119 312 0 1157 261 86 33 chr1 190480623 190481110 -91712554 + MLT1L LTR MaLR 74 586 -29 429 122 0 0 chr1 190481395 190481469 -91712195 + (TG)n Simple_repeat Simple_repeat 2 75 0 294 255 26 92 chr1 190482060 190482213 -91711451 + MLT1K LTR MaLR 436 578 -10 536 245 58 0 chr1 190482230 190482385 -91711279 - MIR3 SINE MIR -42 166 3 222 236 18 0 chr1 190482773 190482828 -91710836 + (TATG)n Simple_repeat Simple_repeat 3 58 0 239 271 0 0 chr1 190482941 190483000 -91710664 + CT-rich Low_complexity Low_complexity 2 60 0 236 360 53 0 chr1 190483127 190483241 -91710423 + L3 LINE CR1 1336 1455 -122 393 175 26 88 chr1 190483432 190483546 -91710118 - L2 LINE L2 -4 3309 3203 231 231 0 19 chr1 190484222 190484274 -91709390 + (CATA)n Simple_repeat Simple_repeat 2 52 0 1540 164 3 97 chr1 190484292 190484622 -91709042 + AluY SINE Alu 1 299 -12 530 343 64 53 chr1 190484787 190485340 -91708324 + L2 LINE L2 2544 3108 -164 261 0 0 0 chr1 190485360 190485389 -91708275 + (CA)n Simple_repeat Simple_repeat 1 29 0 295 185 15 22 chr1 190485604 190485739 -91707925 + (TA)n Simple_repeat Simple_repeat 1 134 0 319 301 0 12 chr1 190485853 190485936 -91707728 + L2 LINE L2 3191 3272 0 484 206 98 43 chr1 190486069 190486253 -91707411 + L2 LINE L2 2150 2343 -971 331 320 137 13 chr1 190487016 190487169 -91706495 - L2 LINE L2 -3 3269 3098 627 248 59 40 chr1 190487201 190487403 -91706261 - MIR SINE MIR -23 239 34 24 0 0 0 chr1 190487818 190487842 -91705822 + AT_rich Low_complexity Low_complexity 1 24 0 1928 156 6 19 chr1 190488753 190489068 -91704596 + AluJb SINE Alu 1 311 -1 2890 233 42 22 chr1 190489388 190490681 -91702983 - L1ME1 LINE L1 -5 6161 4845 1928 150 7 3 chr1 190490681 190490987 -91702677 + AluSx SINE Alu 1 307 -5 2890 233 42 22 chr1 190490987 190491290 -91702374 - L1ME1 LINE L1 -1321 4845 4549 303 206 82 0 chr1 190491289 190491386 -91702278 - L1MD3 LINE L1 0 7995 7891 * 2511 191 19 100 chr1 190491400 190491956 -91701708 - L1MD2 LINE L1 -216 6143 5664 2039 164 0 0 chr1 190491956 190492289 -91701375 - AluSx SINE Alu 0 312 1 2511 191 19 100 chr1 190492289 190492490 -91701174 - L1MD2 LINE L1 -695 5664 5448 1955 227 36 17 chr1 190492512 190493151 -91700513 - L1ME1 LINE L1 -1584 4562 3912 282 200 0 18 chr1 190493157 190493212 -91700452 + Tigger1 DNA MER2_type 2364 2417 -1 215 273 18 0 chr1 190493969 190494024 -91699640 - MIR SINE MIR -29 233 178 190 352 150 28 chr1 190494364 190494611 -91699053 - L2 LINE L2 -337 2977 2701 1793 159 58 28 chr1 190494756 190495120 -91698544 - THE1C LTR MaLR 0 375 1 273 339 142 8 chr1 190495317 190495444 -91698220 + MIR3 SINE MIR 54 197 -11 665 160 13 4 chr1 190495828 190495959 -91697705 + MLT1D LTR MaLR 389 505 0 242 319 89 24 chr1 190495985 190496154 -91697510 + L2 LINE L2 2356 2535 -779 616 263 56 19 chr1 190496279 190496492 -91697172 + MER112 DNA MER1_type 28 248 -12 254 350 115 33 chr1 190496497 190496912 -91696752 + L2 LINE L2 2671 3114 -158 212 219 0 0 chr1 190497000 190497041 -91696623 + L2 LINE L2 3232 3272 0 271 273 53 20 chr1 190498378 190498528 -91695136 + Charlie7 DNA MER1_type 2458 2612 0 1892 163 24 0 chr1 190499445 190499739 -91693925 - AluJo SINE Alu -11 301 1 1998 252 80 44 chr1 190500091 190501079 -91692585 + L2 LINE L2 2289 3313 0 234 307 131 34 chr1 190502095 190502271 -91691393 - L3b LINE CR1 -207 1376 1184 263 321 197 16 chr1 190503167 190503360 -91690304 - MIR SINE MIR -7 255 28 198 103 0 0 chr1 190503973 190504002 -91689662 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 312 70 0 0 chr1 190505340 190505383 -91688281 + (TG)n Simple_repeat Simple_repeat 1 43 0 1530 175 18 82 chr1 190505933 190506333 -91687331 - MLT1B LTR MaLR -12 378 5 502 231 48 14 chr1 190506913 190507060 -91686604 + MIR SINE MIR 59 210 -52 1332 95 62 5 chr1 190507060 190507271 -91686393 - THE1C LTR MaLR 0 375 153 1873 137 39 3 chr1 190507271 190507545 -91686119 + AluSq SINE Alu 1 287 -26 243 0 0 0 chr1 190507545 190507572 -91686092 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 6375 100 1 2 chr1 190507594 190509385 -91684279 + L1PA10 LINE L1 4363 6152 -16 1819 195 0 3 chr1 190510120 190510433 -91683231 + AluJb SINE Alu 1 312 0 246 339 98 65 chr1 190511254 190511499 -91682165 + L2 LINE L2 2966 3218 -54 294 115 0 0 chr1 190511516 190511568 -91682096 + (TGGA)n Simple_repeat Simple_repeat 1 52 0 673 286 34 30 chr1 190511983 190512217 -91681447 + MIR SINE MIR 14 248 -14 308 300 73 9 chr1 190512297 190512407 -91681257 - L2 LINE L2 -1 3271 3155 573 280 81 75 chr1 190512644 190513162 -91680502 + HAL1 LINE L1 47 567 -1940 1028 145 13 67 chr1 190513332 190513624 -91680040 + L1MB1 LINE L1 5214 5492 -676 595 180 11 44 chr1 190513624 190513772 -91679892 + GA-rich Low_complexity Low_complexity 4 146 -34 3537 143 12 52 chr1 190513772 190514151 -91679513 + L1MB1 LINE L1 5476 5815 -353 2158 125 0 3 chr1 190514151 190514448 -91679216 + AluSp SINE Alu 1 296 -17 3537 143 12 52 chr1 190514448 190514787 -91678877 + L1MB1 LINE L1 5815 6166 -2 595 180 11 44 chr1 190514787 190514821 -91678843 + GA-rich Low_complexity Low_complexity 146 180 0 2006 66 0 0 chr1 190514865 190515133 -91678531 + AluY SINE Alu 41 308 0 2374 269 97 40 chr1 190515215 190516634 -91677030 + HAL1 LINE L1 1008 2507 0 1910 134 173 3 chr1 190517414 190517773 -91675891 - MSTA LTR MaLR 0 428 9 391 272 44 7 chr1 190518536 190518672 -91674992 - HAL1 LINE L1 -1633 874 734 1669 191 73 55 chr1 190518705 190519182 -91674482 + MLT1D LTR MaLR 20 505 0 253 316 0 34 chr1 190519386 190519503 -91674161 - HAL1 LINE L1 -2169 338 226 237 183 14 113 chr1 190519722 190519793 -91673871 - MIR SINE MIR -103 159 96 317 258 78 31 chr1 190520093 190520221 -91673443 + MLT1J1 LTR MaLR 101 234 -212 353 214 12 0 chr1 190520232 190520316 -91673348 + MLT1J1 LTR MaLR 356 440 -6 1435 157 4 25 chr1 190521084 190521347 -91672317 + AluJb SINE Alu 61 312 0 191 315 0 0 chr1 190522019 190522073 -91671591 + MIR SINE MIR 53 106 -102 298 198 210 0 chr1 190522404 190522485 -91671179 + MIR3 SINE MIR 105 202 -6 287 234 18 35 chr1 190522954 190523125 -91670539 + (TTA)n Simple_repeat Simple_repeat 1 168 0 202 316 26 13 chr1 190523517 190523593 -91670071 + L2 LINE L2 3231 3307 -6 304 75 19 19 chr1 190524304 190524357 -91669307 - LTR40b LTR ERVL -25 437 385 856 239 33 9 chr1 190524410 190524659 -91669005 - LTR40b LTR ERVL -206 313 1 821 302 96 26 chr1 190524659 190525036 -91668628 - L2 LINE L2 -104 3209 2807 321 182 15 30 chr1 190525723 190525789 -91667875 + L2 LINE L2 3208 3272 0 206 325 118 69 chr1 190526242 190526664 -91667000 - L2 LINE L2 -6 3266 2824 366 231 69 56 chr1 190526977 190527137 -91666527 - L1ME4a LINE L1 -3 6118 5957 399 321 30 8 chr1 190527244 190527378 -91666286 - L2 LINE L2 -6 3307 3171 214 284 157 39 chr1 190528582 190528684 -91664980 + MIR SINE MIR 20 133 -75 349 203 0 0 chr1 190528749 190528818 -91664846 + L1MC4 LINE L1 6635 6703 -1339 180 149 30 15 chr1 190528884 190528951 -91664713 + (TA)n Simple_repeat Simple_repeat 2 69 0 42 57 0 0 chr1 190528951 190529021 -91664643 + AT_rich Low_complexity Low_complexity 1 70 0 227 368 54 30 chr1 190529674 190529840 -91663824 - MIR SINE MIR -64 198 29 400 311 25 19 chr1 190530046 190530207 -91663457 + MIR SINE MIR 47 208 -54 10258 70 14 29 chr1 190530564 190531968 -91661696 + SVA Other Other 2 1383 -3 4650 93 23 6 chr1 190532178 190532867 -91660797 + L1PA13 LINE L1 5463 6163 0 575 325 63 35 chr1 190533162 190533792 -91659872 - L1MEd LINE L1 -1932 4197 3550 460 322 113 20 chr1 190533792 190534020 -91659644 - L1MEd LINE L1 -3472 2657 2452 2161 131 0 3 chr1 190534020 190534333 -91659331 - AluSq SINE Alu -1 312 1 460 322 113 20 chr1 190534333 190534501 -91659163 - L1MEd LINE L1 -3677 2452 2224 338 327 65 20 chr1 190534858 190535011 -91658653 - HAL1 LINE L1 -950 1557 1398 515 289 112 46 chr1 190535016 190535730 -91657934 - L1MEd LINE L1 -4863 1256 496 844 150 92 17 chr1 190536304 190536477 -91657187 + MER53 DNA DNA 4 189 0 248 236 83 14 chr1 190538032 190538104 -91655560 + MIR SINE MIR 88 164 -98 307 309 75 0 chr1 190538206 190538300 -91655364 + L2 LINE L2 3151 3251 -21 1223 184 4 4 chr1 190538351 190538584 -91655080 + MER82 DNA MER2_type 2 234 -419 265 266 8 70 chr1 190540086 190540214 -91653450 - MIR3 SINE MIR -7 201 82 1312 207 97 25 chr1 190540909 190541344 -91652320 - Charlie4a DNA MER1_type -3 505 40 214 320 80 32 chr1 190542496 190542621 -91651043 + L2 LINE L2 2868 2998 -274 184 273 107 58 chr1 190542725 190542846 -91650818 + L2 LINE L2 3149 3275 -38 243 269 19 67 chr1 190543223 190543327 -91650337 + MIR SINE MIR 124 222 -40 21 0 0 0 chr1 190544451 190544472 -91649192 + AT_rich Low_complexity Low_complexity 1 21 0 899 283 0 0 chr1 190544664 190544869 -91648795 + MIR SINE MIR 46 250 -12 186 310 113 0 chr1 190544916 190544987 -91648677 - L2 LINE L2 -4 3268 3190 246 309 96 78 chr1 190545131 190545361 -91648303 - L2 LINE L2 -207 3065 2832 246 32 0 0 chr1 190545530 190545561 -91648103 + (CA)n Simple_repeat Simple_repeat 2 32 0 396 284 113 0 chr1 190545581 190545785 -91647879 + L1MC1 LINE L1 1428 1654 -4742 3374 254 63 74 chr1 190545821 190547941 -91645723 + L1MC1 LINE L1 2209 4295 -1920 2233 125 0 0 chr1 190547941 190548252 -91645412 + AluSx SINE Alu 1 311 -1 3374 254 63 74 chr1 190548252 190548926 -91644738 + L1MC1 LINE L1 4295 4974 -1241 5357 179 34 3 chr1 190549186 190550582 -91643082 + L1MC1 LINE L1 4960 6396 -6 703 279 61 8 chr1 190550584 190550960 -91642704 + L1M4 LINE L1 3560 3955 -2191 390 276 93 36 chr1 190550967 190551116 -91642548 + L1M4 LINE L1 4084 4223 -1923 2424 87 0 0 chr1 190551116 190551414 -91642250 + AluY SINE Alu 1 298 -13 390 276 93 36 chr1 190551414 190551543 -91642121 + L1M4 LINE L1 4223 4378 -1768 1003 83 0 35 chr1 190551620 190551764 -91641900 + AluSc SINE Alu 159 297 -12 587 233 99 39 chr1 190551765 190551878 -91641786 + L1M4 LINE L1 4509 4614 -1532 225 65 0 0 chr1 190551878 190551909 -91641755 + (TG)n Simple_repeat Simple_repeat 2 32 0 587 233 99 39 chr1 190551909 190552027 -91641637 + L1M4 LINE L1 4614 4754 -1392 30 0 0 0 chr1 190552042 190552072 -91641592 + AT_rich Low_complexity Low_complexity 1 30 0 2430 79 9 20 chr1 190552166 190552507 -91641157 + L1PA8A LINE L1 5795 6131 0 5691 97 6 46 chr1 190552526 190553806 -91639858 + L1PA10 LINE L1 4930 6168 0 515 301 47 25 chr1 190554487 190554723 -91638941 + MLT1J2 LTR MaLR 24 264 -186 499 196 49 53 chr1 190554724 190554940 -91638724 - MER58 DNA MER1_type -1 2419 8 480 209 72 43 chr1 190554980 190555119 -91638545 + MLT1J1 LTR MaLR 286 428 -18 876 271 54 4 chr1 190555191 190555431 -91638233 - MIR SINE MIR -10 252 1 400 273 0 0 chr1 190556859 190556958 -91636706 + MIR3 SINE MIR 92 190 -18 817 172 90 0 chr1 190557053 190557198 -91636466 + FAM SINE Alu 1 158 -17 32 43 0 0 chr1 190557198 190557244 -91636420 + AT_rich Low_complexity Low_complexity 1 46 0 442 270 147 18 chr1 190557320 190557483 -91636181 - MIR3 SINE MIR -9 199 16 415 278 85 62 chr1 190559125 190559301 -91634363 - MIR SINE MIR -48 214 35 181 319 14 14 chr1 190559310 190559382 -91634282 - MIR3 SINE MIR -125 83 12 319 286 50 70 chr1 190559422 190559496 -91634168 + L3 LINE CR1 1351 1425 -152 2088 169 43 18 chr1 190559496 190559935 -91633729 - LTR7 LTR ERV1 0 450 1 319 286 50 70 chr1 190559935 190560059 -91633605 + L3 LINE CR1 1425 1545 -32 1057 257 56 41 chr1 190560454 190560921 -91632743 + MLT1L LTR MaLR 140 613 -2 344 385 115 9 chr1 190561076 190561302 -91632362 + MIR SINE MIR 7 256 -6 213 239 33 65 chr1 190561316 190561408 -91632256 + MIR SINE MIR 124 212 -50 280 301 36 0 chr1 190561987 190562070 -91631594 + MIR SINE MIR 51 136 -72 384 268 130 54 chr1 190562344 190562583 -91631081 + MLT1J2 LTR MaLR 188 444 -6 219 282 182 71 chr1 190562905 190563075 -91630589 - MIR3 SINE MIR 0 208 20 468 331 81 34 chr1 190563660 190563980 -91629684 - L2 LINE L2 -3 3269 2935 422 325 86 21 chr1 190564111 190564391 -91629273 - MLT1K LTR MaLR -87 501 204 3874 203 25 16 chr1 190564539 190565765 -91627899 + L1MB7 LINE L1 4938 6173 -11 392 208 28 19 chr1 190565780 190565886 -91627778 + L1MB5 LINE L1 5322 5428 -750 1986 129 14 0 chr1 190565897 190566191 -91627473 + AluSq SINE Alu 12 309 -4 288 130 0 0 chr1 190566194 190566240 -91627424 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 373 91 0 0 chr1 190566245 190566300 -91627364 + L1MB5 LINE L1 5416 5470 -704 552 72 0 0 chr1 190566300 190566404 -91627260 - AluY SINE Alu 0 317 214 3105 182 43 25 chr1 190566405 190567096 -91626568 + L1MB5 LINE L1 5460 6163 -11 204 322 109 27 chr1 190567164 190567347 -91626317 + L2 LINE L2 2764 2961 -353 * 432 321 30 15 chr1 190567340 190567474 -91626190 + L2 LINE L2 3137 3272 0 1334 149 0 33 chr1 190568073 190568315 -91625349 + MER46A DNA MER2_type 2 235 -1 2127 109 0 0 chr1 190568404 190568715 -91624949 - AluSx SINE Alu 0 311 1 217 257 27 40 chr1 190568796 190568870 -91624794 + MIR SINE MIR 81 153 -109 615 298 56 0 chr1 190570532 190570710 -91622954 + MIR SINE MIR 28 215 -47 4783 97 61 0 chr1 190570832 190571572 -91622092 + L1PA13 LINE L1 5370 6154 -9 1845 166 102 46 chr1 190571582 190571917 -91621747 + MLT1D LTR MaLR 13 381 -124 2325 67 0 17 chr1 190571917 190572217 -91621447 - AluY SINE Alu -16 295 1 1845 166 102 46 chr1 190572217 190572334 -91621330 + MLT1D LTR MaLR 381 490 -15 2028 148 0 3 chr1 190572351 190572649 -91621015 + AluSx SINE Alu 1 297 -15 1083 348 35 52 chr1 190572664 190573397 -91620267 + L2 LINE L2 2241 2961 -353 287 311 56 11 chr1 190573409 190573499 -91620165 + L2 LINE L2 3138 3231 -41 342 206 0 0 chr1 190573512 190573585 -91620079 + (TA)n Simple_repeat Simple_repeat 1 73 0 235 67 0 0 chr1 190573599 190573644 -91620020 - LTR66 LTR ERVL -171 439 395 1610 202 185 47 chr1 190573899 190574472 -91619192 + MLT1E1 LTR MaLR 2 653 -1 181 289 0 0 chr1 190575075 190575120 -91618544 + MIR SINE MIR 96 140 -68 182 247 235 12 chr1 190575178 190575263 -91618401 + MIR SINE MIR 156 259 -3 337 226 43 32 chr1 190575616 190575709 -91617955 + MIR SINE MIR 60 153 -109 459 233 162 23 chr1 190576781 190577047 -91616617 + L1M4 LINE L1 3093 3395 -2751 22 0 0 0 chr1 190577053 190577075 -91616589 + AT_rich Low_complexity Low_complexity 1 22 0 3010 52 3 0 chr1 190577075 190577457 -91616207 - L1PA4 LINE L1 -2 6153 5771 198 0 0 0 chr1 190577457 190577479 -91616185 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6307 25 0 0 chr1 190577479 190578207 -91615457 - L1PA3 LINE L1 -18 6137 5410 10415 37 1 0 chr1 190578207 190579917 -91613747 - L1PA4 LINE L1 -366 5788 4077 4789 35 0 0 chr1 190579917 190580517 -91613147 + L1PA4 LINE L1 3477 4076 -2070 430 301 5 21 chr1 190580522 190580708 -91612956 + L1M4 LINE L1 3403 3585 -2561 4014 285 25 35 chr1 190580724 190582382 -91611282 + L1PBa LINE L1 3 1644 -5219 * 5820 168 49 10 chr1 190582349 190585136 -91608528 + L1PBb LINE L1 8 2900 -3303 2638 193 47 16 chr1 190585141 190585778 -91607886 + L1ME1 LINE L1 5505 6161 -5 400 341 72 0 chr1 190585885 190586090 -91607574 - L1ME4a LINE L1 -238 5883 5694 2402 83 0 0 chr1 190586090 190586110 -91607554 - AluY SINE Alu -10 301 282 339 25 0 0 chr1 190586110 190586150 -91607514 + (TG)n Simple_repeat Simple_repeat 1 40 0 2402 83 0 0 chr1 190586150 190586430 -91607234 - AluY SINE Alu -28 283 1 400 341 72 0 chr1 190586430 190586599 -91607065 - L1ME4a LINE L1 -427 5694 5482 264 350 75 25 chr1 190587440 190587600 -91606064 + L2 LINE L2 3071 3238 -34 * 334 264 33 22 chr1 190587592 190587683 -91605981 + L2 LINE L2 2622 2713 -601 229 160 0 20 chr1 190587683 190587733 -91605931 - L1MC5 LINE L1 -919 7042 6994 897 290 30 20 chr1 190587785 190588178 -91605486 - L1MC4 LINE L1 -944 7098 6701 459 234 118 36 chr1 190588227 190588788 -91604876 + L1MC5 LINE L1 7020 7577 -384 2535 74 0 0 chr1 190588874 190589184 -91604480 - AluY SINE Alu -1 310 1 333 295 48 24 chr1 190589289 190589455 -91604209 - L1ME LINE L1 -605 5516 5347 403 288 47 54 chr1 190590433 190590618 -91603046 - MIR SINE MIR -66 142 4 261 368 0 34 chr1 190591006 190591123 -91602541 + L2 LINE L2 2924 3036 -236 298 415 28 17 chr1 190591498 190591857 -91601807 + L2 LINE L2 1018 1380 -1934 191 204 0 82 chr1 190593419 190593468 -91600196 + L2 LINE L2 3186 3230 -42 790 269 108 78 chr1 190593536 190594103 -91599561 - MLT1H1 LTR MaLR 0 555 1 407 36 36 0 chr1 190595710 190595766 -91597898 + (GGAA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr1 190595893 190595914 -91597750 + AT_rich Low_complexity Low_complexity 1 21 0 2573 42 0 7 chr1 190596558 190596865 -91596799 + AluY SINE Alu 1 305 -6 441 354 36 31 chr1 190597693 190597888 -91595776 - MIR3 SINE MIR -10 198 3 2333 91 0 0 chr1 190597950 190598237 -91595427 + AluSc SINE Alu 1 287 -22 339 318 139 17 chr1 190599143 190599316 -91594348 - MIR SINE MIR -18 244 51 416 291 45 28 chr1 190599383 190599562 -91594102 + MIR SINE MIR 31 212 -50 368 209 0 15 chr1 190599994 190600061 -91593603 - MIR SINE MIR -127 81 16 507 233 113 0 chr1 190600174 190600307 -91593357 + MIR SINE MIR 76 223 -39 414 289 63 7 chr1 190602568 190602710 -91590954 + MIR SINE MIR 51 200 -62 245 70 47 0 chr1 190602711 190602754 -91590910 + (CATA)n Simple_repeat Simple_repeat 4 48 0 9276 102 9 2 chr1 190602811 190602930 -91590734 + HSMAR1 DNA Mariner 1 118 -1169 194 0 0 37 chr1 190602930 190602957 -91590707 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 9276 102 9 2 chr1 190602957 190604111 -91589553 + HSMAR1 DNA Mariner 118 1283 -4 551 330 31 5 chr1 190604111 190604305 -91589359 - MIR SINE MIR -13 249 51 473 260 62 20 chr1 190604503 190604649 -91589015 - L2 LINE L2 -4 3268 3117 212 337 12 12 chr1 190605147 190605230 -91588434 - L2 LINE L2 0 3313 3231 189 289 0 0 chr1 190605531 190605569 -91588095 + MIR SINE MIR 112 149 -59 1886 138 0 0 chr1 190605570 190605830 -91587834 + AluSg SINE Alu 39 298 -12 264 295 76 0 chr1 190606440 190606545 -91587119 - MIR SINE MIR -56 206 94 23 33 0 0 chr1 190606650 190606680 -91586984 + AT_rich Low_complexity Low_complexity 1 30 0 685 271 12 68 chr1 190606902 190607017 -91586647 - MIR SINE MIR -8 254 159 2232 100 3 0 chr1 190607017 190607308 -91586356 - AluSx SINE Alu -20 292 1 685 271 12 68 chr1 190607308 190607443 -91586221 - MIR SINE MIR -103 159 18 197 226 274 49 chr1 190608767 190608931 -91584733 + MIR SINE MIR 47 247 -15 182 170 19 75 chr1 190608903 190608956 -91584708 + L2 LINE L2 3264 3313 0 * 261 0 0 0 chr1 190609126 190609155 -91584509 + (TG)n Simple_repeat Simple_repeat 2 30 0 252 59 0 0 chr1 190609154 190609188 -91584476 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 438 286 133 30 chr1 190609653 190609887 -91583777 + MIR SINE MIR 2 259 -3 228 316 126 76 chr1 190610962 190611424 -91582240 - L2 LINE L2 -20 3293 2809 254 231 0 0 chr1 190612082 190612134 -91581530 + CT-rich Low_complexity Low_complexity 1 52 0 690 264 74 26 chr1 190612335 190612566 -91581098 - MIR SINE MIR -16 246 5 551 294 7 7 chr1 190614237 190614373 -91579291 + L2 LINE L2 3137 3272 0 569 217 65 14 chr1 190615302 190615440 -91578224 + MIR SINE MIR 20 164 -98 246 204 0 0 chr1 190615722 190615771 -91577893 + GA-rich Low_complexity Low_complexity 1 49 0 201 158 0 0 chr1 190617426 190617464 -91576200 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 230 286 0 0 chr1 190617588 190617637 -91576027 + LTR16A LTR ERVL 402 450 0 358 332 92 22 chr1 190618906 190619264 -91574400 + HERVL LTR ERVL 742 1124 -4640 3339 73 0 2 chr1 190619330 190619770 -91573894 - L1PA8 LINE L1 -2 6170 5732 321 294 25 49 chr1 190619865 190620028 -91573636 + HERVL LTR ERVL 1284 1442 -4322 1503 263 40 8 chr1 190620207 190620587 -91573077 + MER119 DNA MER1_type 31 422 -161 1066 204 38 0 chr1 190620588 190620828 -91572836 + MER119 DNA MER1_type 334 582 -1 204 40 0 0 chr1 190620891 190620916 -91572748 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5298 114 1 10 chr1 190620916 190621705 -91571959 - L1PA10 LINE L1 -21 6147 5366 12709 128 17 8 chr1 190621707 190623770 -91569894 + L1PA10 LINE L1 3278 5358 -788 261 286 80 36 chr1 190623792 190623904 -91569760 + HERVL LTR ERVL 1714 1830 -3934 372 371 39 22 chr1 190623970 190624334 -91569330 + HERVL LTR ERVL 2680 3049 -2715 850 284 85 62 chr1 190624632 190625617 -91568047 + L1MEd LINE L1 530 1572 -4738 422 306 71 22 chr1 190626035 190626303 -91567361 + HERVL LTR ERVL 3373 3612 -2042 239 0 32 0 chr1 190626666 190626697 -91566967 + (TTG)n Simple_repeat Simple_repeat 2 33 0 13614 181 19 6 chr1 190627680 190629939 -91563725 - L1PB1 LINE L1 -1 6150 3818 222 37 0 0 chr1 190629939 190629966 -91563698 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 13614 181 19 6 chr1 190629966 190631576 -91562088 - L1PB1 LINE L1 -2333 3818 2231 747 329 44 18 chr1 190631576 190631959 -91561705 + HERVL LTR ERVL 4088 4480 -1284 204 40 0 0 chr1 190632877 190632902 -91560762 + (TAA)n Simple_repeat Simple_repeat 2 26 0 561 224 40 0 chr1 190634052 190634177 -91559487 + FLAM_A SINE Alu 1 130 -3 32 0 0 0 chr1 190634177 190634209 -91559455 + AT_rich Low_complexity Low_complexity 1 32 0 1988 143 7 7 chr1 190634228 190634535 -91559129 - AluSx SINE Alu -5 307 1 187 369 90 21 chr1 190634560 190635072 -91558592 + L2 LINE L2 565 1111 -2203 208 388 40 45 chr1 190635132 190635356 -91558308 + L2 LINE L2 1343 1565 -1749 22 70 0 0 chr1 190635384 190635427 -91558237 + AT_rich Low_complexity Low_complexity 1 43 0 479 266 167 15 chr1 190635540 190635767 -91557897 - MIR SINE MIR -2 260 3 546 16 0 0 chr1 190636575 190636638 -91557026 + (TG)n Simple_repeat Simple_repeat 1 63 0 204 167 28 0 chr1 190637319 190637355 -91556309 + MER5A DNA MER1_type 46 82 -107 713 247 6 0 chr1 190637365 190637535 -91556129 - MER58B DNA MER1_type -4 337 167 2728 215 63 34 chr1 190637549 190638312 -91555352 + L1MC4 LINE L1 7214 7998 -44 1666 204 60 20 chr1 190638411 190638814 -91554850 + HsTC2 DNA Tc2 516 934 -964 807 251 148 0 chr1 190638815 190639106 -91554558 - MER69 DNA AcHobo -2 2524 2191 271 265 29 0 chr1 190639102 190639170 -91554494 - MER69 DNA AcHobo -2456 70 1 * 497 285 80 10 chr1 190639175 190639375 -91554289 + HsTC2 DNA Tc2 932 1145 -753 511 201 183 6 chr1 190639378 190639542 -91554122 + HsTC2 DNA Tc2 1696 1888 -10 488 308 73 26 chr1 190639957 190640191 -91553473 + L3 LINE CR1 1137 1381 -196 202 283 17 0 chr1 190640214 190640274 -91553390 + L2 LINE L2 3253 3313 0 835 217 131 12 chr1 190640404 190640603 -91553061 - MIR SINE MIR -31 231 15 295 337 11 0 chr1 190641467 190641556 -91552108 - MIR SINE MIR -166 96 7 406 361 13 0 chr1 190642159 190642317 -91551347 + L3 LINE CR1 1296 1455 -122 627 262 28 0 chr1 190642943 190643088 -91550576 - MIR3 SINE MIR -3 205 57 186 43 0 0 chr1 190643382 190643405 -91550259 + (TG)n Simple_repeat Simple_repeat 2 24 0 396 267 84 30 chr1 190643767 190643898 -91549766 - MIR SINE MIR -6 256 119 475 156 11 11 chr1 190644190 190644280 -91549384 + L1MA4 LINE L1 6183 6272 -28 317 259 83 19 chr1 190644342 190644450 -91549214 - L1ME LINE L1 -283 5838 5724 451 200 48 0 chr1 190644458 190644563 -91549101 - FRAM SINE Alu -2 174 65 354 323 47 34 chr1 190645124 190645359 -91548305 - L1MC4a LINE L1 -1848 5960 5723 228 267 244 59 chr1 190645604 190645739 -91547925 + MIR3 SINE MIR 10 169 -39 279 79 0 0 chr1 190645797 190645835 -91547829 + (TG)n Simple_repeat Simple_repeat 2 39 0 239 266 57 81 chr1 190646703 190646827 -91546837 - L2 LINE L2 0 3272 3152 390 21 0 0 chr1 190646851 190646898 -91546766 + (TG)n Simple_repeat Simple_repeat 1 47 0 1638 214 71 50 chr1 190647016 190647511 -91546153 - MLT1D LTR MaLR 0 505 1 19605 93 13 3 chr1 190647525 190651185 -91542479 - L1PA7 LINE L1 0 6154 2467 255 352 78 41 chr1 190651304 190651447 -91542217 + MIR SINE MIR 30 185 -77 3255 132 56 6 chr1 190651447 190651948 -91541716 - MER1A DNA MER1_type 0 527 2 255 352 78 41 chr1 190651948 190652023 -91541641 + MIR SINE MIR 185 256 -6 199 339 0 0 chr1 190652105 190652170 -91541494 - L2 LINE L2 -2 3270 3206 297 282 139 53 chr1 190653360 190653605 -91540059 - L2 LINE L2 0 3272 3007 1127 147 18 49 chr1 190654819 190655044 -91538620 + MER20 DNA MER1_type 2 219 0 521 184 150 7 chr1 190655303 190655450 -91538214 - LTR33A LTR ERVL -62 461 294 2094 79 0 0 chr1 190655645 190655898 -91537766 + AluSc SINE Alu 1 253 -56 796 235 78 25 chr1 190656002 190656206 -91537458 + MLT1J LTR MaLR 229 443 -68 1985 143 23 3 chr1 190656226 190656527 -91537137 - AluSx SINE Alu -5 307 1 984 207 17 6 chr1 190656878 190657057 -91536607 - MER5A DNA MER1_type 0 189 9 662 206 8 0 chr1 190658922 190659053 -91534611 + FLAM_C SINE Alu 1 132 -11 486 0 0 0 chr1 190659362 190659416 -91534248 + (CA)n Simple_repeat Simple_repeat 2 55 0 1168 161 0 11 chr1 190659517 190659697 -91533967 - AluJo SINE Alu -1 311 134 21 0 0 0 chr1 190659906 190659927 -91533737 + AT_rich Low_complexity Low_complexity 1 21 0 480 276 142 71 chr1 190660077 190660391 -91533273 - MLT1H1 LTR MaLR 0 555 195 1185 142 0 11 chr1 190660391 190660581 -91533083 + L1PA16 LINE L1 5969 6156 -10 480 276 142 71 chr1 190660581 190660791 -91532873 - MLT1H1 LTR MaLR -360 195 1 219 125 62 16 chr1 190660850 190660914 -91532750 + (TA)n Simple_repeat Simple_repeat 1 67 0 745 225 12 6 chr1 190660921 190661090 -91532574 + MLT1J1 LTR MaLR 1 170 -276 3160 248 83 77 chr1 190661098 190662810 -91530854 - L1MC4a LINE L1 -651 7157 5435 1398 189 100 24 chr1 190662843 190663223 -91530441 + L1MA9 LINE L1 5866 6274 -38 209 132 26 0 chr1 190663226 190663264 -91530400 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 190663600 190663621 -91530043 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr1 190664215 190664256 -91529408 + (TG)n Simple_repeat Simple_repeat 2 42 0 350 267 20 34 chr1 190665630 190665776 -91527888 + L1ME4a LINE L1 5754 5897 -224 271 246 104 22 chr1 190665810 190665944 -91527720 + L1ME4a LINE L1 5974 6118 -3 563 89 22 0 chr1 190666347 190666437 -91527227 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 387 0 0 0 chr1 190666535 190666578 -91527086 + (CA)n Simple_repeat Simple_repeat 2 44 0 303 284 23 11 chr1 190667263 190667351 -91526313 - MIR SINE MIR -1 261 173 266 215 127 13 chr1 190667641 190667720 -91525944 - MIR SINE MIR -112 150 63 350 270 171 0 chr1 190668165 190668276 -91525388 - L2 LINE L2 -1 3271 3142 835 141 0 30 chr1 190668435 190668570 -91525094 - AluJo SINE Alu -181 131 1 1643 184 7 26 chr1 190668770 190669075 -91524589 + AluJo SINE Alu 1 299 -13 199 352 24 24 chr1 190669348 190669473 -91524191 - MIR SINE MIR -57 205 81 258 32 0 0 chr1 190670546 190670577 -91523087 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 184 294 0 0 chr1 190670747 190670798 -91522866 + MIR3 SINE MIR 155 205 -3 1915 171 0 9 chr1 190670826 190671141 -91522523 - AluJb SINE Alu 0 312 1 2530 203 30 60 chr1 190671275 190671920 -91521744 + MLT1E2 LTR MaLR 1 625 -1 1982 157 47 14 chr1 190672639 190673002 -91520662 + THE1C LTR MaLR 1 375 0 202 300 221 0 chr1 190673759 190673899 -91519765 + MIR SINE MIR 49 219 -43 * 854 265 97 54 chr1 190673878 190674380 -91519284 + L2 LINE L2 2773 3295 -18 416 348 25 25 chr1 190674753 190674914 -91518750 + MIR SINE MIR 13 173 -89 1796 189 17 7 chr1 190675329 190675626 -91518038 + AluJo SINE Alu 1 300 -12 2030 140 119 58 chr1 190675895 190675924 -91517740 + LTR54 LTR ERV1 3 29 -481 2162 108 0 0 chr1 190675924 190676203 -91517461 + AluSc SINE Alu 1 279 -30 2030 140 119 58 chr1 190676203 190676652 -91517012 + LTR54 LTR ERV1 29 510 0 370 323 100 8 chr1 190678082 190678212 -91515452 + L2 LINE L2 2617 2758 -556 664 299 35 106 chr1 190678235 190678595 -91515069 + L2 LINE L2 2863 3182 -131 1813 191 18 0 chr1 190678595 190678930 -91514734 - MER58B DNA MER1_type 0 341 1 664 299 35 106 chr1 190678930 190679050 -91514614 + L2 LINE L2 3182 3309 -4 1363 205 80 52 chr1 190679903 190679980 -91513684 + Charlie4a DNA MER1_type 18 91 -1870 1843 156 135 26 chr1 190679980 190680365 -91513299 - MSTA LTR MaLR 0 428 2 1363 205 80 52 chr1 190680365 190680765 -91512899 + Charlie4a DNA MER1_type 91 508 0 4353 182 28 46 chr1 190682250 190683041 -91510623 + L1MA9 LINE L1 3859 4663 -1649 2174 135 0 0 chr1 190683041 190683337 -91510327 - AluSx SINE Alu -11 301 6 4353 182 28 46 chr1 190683337 190684511 -91509153 + L1MA9 LINE L1 4658 5768 -539 712 135 15 8 chr1 190684511 190684632 -91509032 + L1MA9 LINE L1 6179 6312 0 1089 292 55 53 chr1 190684894 190685383 -91508281 + L3 LINE CR1 1082 1571 -6 207 245 0 0 chr1 190686416 190686469 -91507195 - L2 LINE L2 0 3313 3261 19665 101 36 57 chr1 190686475 190692853 -91500811 - L1PA7 LINE L1 -1 6153 13 464 187 82 32 chr1 190693380 190693527 -91500137 + MIR SINE MIR 63 215 -47 280 244 0 107 chr1 190694532 190694663 -91499001 + MER5A DNA MER1_type 1 117 -72 1017 276 174 24 chr1 190695398 190696012 -91497652 - L2 LINE L2 -191 3122 2420 26 30 0 0 chr1 190696022 190696055 -91497609 + AT_rich Low_complexity Low_complexity 1 33 0 303 264 28 58 chr1 190696486 190696786 -91496878 + L1MC4a LINE L1 7317 7632 -176 1623 113 92 0 chr1 190696796 190697104 -91496560 + Tigger4(Zombi) DNA MER2_type 2 2731 0 213 60 0 90 chr1 190697113 190697180 -91496484 + (GAA)n Simple_repeat Simple_repeat 2 62 0 232 161 0 54 chr1 190697223 190697279 -91496385 + L1MC5 LINE L1 7865 7917 -44 223 259 19 0 chr1 190698339 190698393 -91495271 + MIR SINE MIR 201 255 -7 633 298 6 0 chr1 190698411 190698579 -91495085 + L1ME3A LINE L1 5997 6165 -5 304 343 36 43 chr1 190699002 190699142 -91494522 + L2 LINE L2 3134 3272 0 2726 150 56 2 chr1 190700068 190700529 -91493135 - L1MB8 LINE L1 -5 6173 5688 516 334 87 29 chr1 190700537 190700881 -91492783 - L3 LINE CR1 -7 1570 1207 180 314 39 0 chr1 190700881 190700932 -91492732 + L3 LINE CR1 1518 1570 -7 791 275 88 82 chr1 190701051 190701505 -91492159 + MLT1K LTR MaLR 124 580 -8 205 173 19 58 chr1 190701626 190701678 -91491986 - L3 LINE CR1 -605 972 923 * 224 227 0 0 chr1 190701666 190701710 -91491954 + MIR SINE MIR 207 250 -12 655 307 47 50 chr1 190702503 190702667 -91490997 + Charlie2 DNA MER1_type 1 165 -2697 2921 3 0 0 chr1 190702667 190702977 -91490687 - AluYa5 SINE Alu -1 310 1 655 307 47 50 chr1 190702977 190703131 -91490533 + Charlie2 DNA MER1_type 165 318 -2544 1103 224 222 11 chr1 190703142 190703575 -91490089 + Charlie2 DNA MER1_type 1859 2382 -480 494 269 110 0 chr1 190703595 190703740 -91489924 - L1ME LINE L1 -5649 421 261 437 267 15 8 chr1 190703987 190704118 -91489546 + Charlie2 DNA MER1_type 2690 2821 -41 449 309 16 62 chr1 190705186 190705380 -91488284 + L3 LINE CR1 1309 1493 -84 * 586 228 47 20 chr1 190705359 190705507 -91488157 - MER5A DNA MER1_type -30 148 1 510 319 24 12 chr1 190705543 190705712 -91487952 + MIR SINE MIR 1 171 -91 207 0 0 0 chr1 190706127 190706150 -91487514 + (A)n Simple_repeat Simple_repeat 1 23 0 181 398 37 0 chr1 190706799 190706907 -91486757 - L2 LINE L2 -3 3269 3158 358 323 91 27 chr1 190707674 190707726 -91485938 - MIR SINE MIR -6 256 209 2129 178 23 16 chr1 190707726 190708113 -91485551 + MLT1B LTR MaLR 1 390 0 358 323 91 27 chr1 190708113 190708246 -91485418 - MIR SINE MIR -53 209 59 356 267 48 0 chr1 190709987 190710092 -91483572 + L2 LINE L2 2965 3074 -239 279 369 0 9 chr1 190710079 190710190 -91483474 + L2 LINE L2 3203 3312 -1 * 404 338 91 30 chr1 190710701 190711062 -91482602 + L2 LINE L2 2854 3236 -36 325 289 151 36 chr1 190711098 190711264 -91482400 - L2 LINE L2 0 3313 3129 180 158 0 0 chr1 190711379 190711417 -91482247 + (CA)n Simple_repeat Simple_repeat 1 38 0 281 245 10 31 chr1 190713740 190713838 -91479826 + GA-rich Low_complexity Low_complexity 4 99 0 390 269 67 15 chr1 190713975 190714109 -91479555 - MER5A DNA MER1_type -1 188 48 1636 187 26 7 chr1 190714575 190714692 -91478972 + AluJo SINE Alu 1 114 -198 393 39 0 0 chr1 190714692 190714743 -91478921 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1636 187 26 7 chr1 190714743 190714930 -91478734 + AluJo SINE Alu 114 311 -1 2506 104 6 11 chr1 190715175 190715531 -91478133 - L1PA13 LINE L1 -4 6159 5806 234 238 111 16 chr1 190715846 190715909 -91477755 + L2 LINE L2 3204 3272 0 2044 121 0 51 chr1 190716065 190716380 -91477284 + AluSx SINE Alu 1 299 -13 2207 184 2 30 chr1 190716992 190717393 -91476271 - MLT1B LTR MaLR 0 390 1 1908 169 13 3 chr1 190717841 190718143 -91475521 + AluJb SINE Alu 1 305 -7 846 157 17 11 chr1 190718166 190718344 -91475320 + GA-rich Low_complexity Low_complexity 2 180 0 679 138 5 53 chr1 190718362 190718550 -91475114 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 321 133 67 95 chr1 190718660 190718765 -91474899 - MLT1G LTR MaLR 0 590 489 6582 154 11 12 chr1 190768765 190770839 -91422825 + L1MA4 LINE L1 4221 6294 -6 259 285 171 16 chr1 190771049 190771172 -91422492 + MIR SINE MIR 119 260 -2 3412 123 0 8 chr1 190771453 190771939 -91421725 + L1PA15 LINE L1 5683 6164 -1 965 293 78 12 chr1 190771944 190772375 -91421289 - L2 LINE L2 -255 3058 2593 457 257 9 0 chr1 190772441 190772550 -91421114 - MER69A DNA AcHobo -67 110 1 214 272 89 89 chr1 190772751 190772964 -91420700 + L2 LINE L2 2681 2893 -421 462 315 123 20 chr1 190773167 190773370 -91420294 + MIR SINE MIR 26 249 -13 217 293 71 40 chr1 190773400 190773499 -91420165 + L2 LINE L2 3211 3312 -1 366 322 62 27 chr1 190774204 190774350 -91419314 + MIR SINE MIR 26 176 -86 979 265 78 68 chr1 190774372 190774949 -91418715 - MLT1G LTR MaLR -7 583 1 595 344 44 4 chr1 190775152 190775402 -91418262 - MIR SINE MIR 0 262 3 560 256 8 0 chr1 190776339 190776460 -91417204 - L2 LINE L2 -6 3307 3186 1295 253 146 36 chr1 190777348 190777882 -91415782 - MLT1L LTR MaLR -7 608 16 196 200 114 100 chr1 190778236 190778376 -91415288 - MIR3 SINE MIR -1 207 66 203 292 100 39 chr1 190779313 190779443 -91414221 - MIR SINE MIR -62 200 63 1300 206 21 94 chr1 190779676 190780049 -91413615 - MLT1A1 LTR MaLR 0 365 20 2011 190 63 25 chr1 190780773 190781215 -91412449 + LTR2B LTR ERV1 32 490 0 198 395 83 18 chr1 190781733 190781842 -91411822 + L2 LINE L2 3137 3252 -20 1930 161 0 22 chr1 190782316 190782633 -91411031 - AluJo SINE Alu 0 312 3 419 314 115 69 chr1 190782635 190783027 -91410637 + L2 LINE L2 2832 3241 -31 697 142 124 0 chr1 190783050 190783163 -91410501 - AluSg/x SINE Alu -16 296 170 1089 81 0 0 chr1 190783992 190784141 -91409523 + (TTTC)n Simple_repeat Simple_repeat 4 152 0 252 0 0 0 chr1 190784170 190784198 -91409466 + (TC)n Simple_repeat Simple_repeat 1 28 0 1002 195 25 17 chr1 190784198 190784434 -91409230 - AluJo SINE Alu 0 312 75 586 264 57 11 chr1 190784677 190784867 -91408797 + MIR SINE MIR 60 260 -2 242 327 168 0 chr1 190785401 190785508 -91408156 + L2 LINE L2 3148 3272 0 1053 181 181 78 chr1 190785652 190786060 -91407604 - LTR7 LTR ERV1 0 450 1 2659 154 35 12 chr1 190786425 190786847 -91406817 + MSTB1 LTR MaLR 1 432 0 513 262 8 0 chr1 190786887 190787009 -91406655 - MLT1L LTR MaLR -10 605 483 633 250 44 52 chr1 190787155 190787403 -91406261 - MLT1L LTR MaLR -369 246 1 183 80 0 0 chr1 190787875 190787900 -91405764 + (T)n Simple_repeat Simple_repeat 1 25 0 2075 176 2 35 chr1 190788184 190788582 -91405082 + MLT1B LTR MaLR 6 390 0 292 342 40 35 chr1 190789263 190789462 -91404202 + MIR SINE MIR 40 239 -23 276 200 0 0 chr1 190790370 190790430 -91403234 + GA-rich Low_complexity Low_complexity 3 62 0 1777 264 60 9 chr1 190790538 190790992 -91402672 + MLT1H1 LTR MaLR 71 547 -8 1020 306 146 8 chr1 190791275 190791897 -91401767 + L1ME4a LINE L1 5410 6117 -4 2915 225 57 74 chr1 190792289 190793499 -91400165 + L1ME2 LINE L1 3 1332 -5208 1700 161 3 33 chr1 190793501 190793806 -91399858 - AluJo SINE Alu -16 296 1 2056 191 83 23 chr1 190793864 190794335 -91399329 - MLT1D LTR MaLR -2 503 5 566 208 25 64 chr1 190794340 190794582 -91399082 - MLT1D-int LTR MaLR -8 1724 1237 840 226 0 0 chr1 190794589 190794757 -91398907 + FRAM SINE Alu 1 168 -8 423 168 98 210 chr1 190794757 190794971 -91398693 - MLT1D-int LTR MaLR -223 1148 959 1550 234 82 81 chr1 190795073 190795727 -91397937 + L1ME2 LINE L1 3848 4500 -2040 189 0 0 0 chr1 190795727 190795748 -91397916 + (GAAA)n Simple_repeat Simple_repeat 4 24 0 1550 234 82 81 chr1 190795748 190795776 -91397888 + L1ME2 LINE L1 4500 4526 -2014 472 117 156 0 chr1 190795776 190795853 -91397811 + 5S rRNA rRNA 1 89 -32 1550 234 82 81 chr1 190795853 190796141 -91397523 + L1ME2 LINE L1 4526 4902 -1638 1529 241 81 19 chr1 190796136 190796655 -91397009 + L1ME2 LINE L1 5165 5715 -825 * 1827 150 0 25 chr1 190796655 190796964 -91396700 + AluJb SINE Alu 13 314 0 3580 215 60 19 chr1 190796967 190797757 -91395907 - MER21B LTR ERV1 -30 833 12 760 82 9 9 chr1 190797781 190797891 -91395773 + L1MD2 LINE L1 6249 6358 -1 342 251 74 70 chr1 190797900 190798132 -91395532 + Charlie8 DNA MER1_type 106 276 -2141 291 283 69 35 chr1 190798603 190798748 -91394916 - MIR SINE MIR -41 221 72 730 232 19 58 chr1 190799379 190799638 -91394026 + MIR SINE MIR 13 261 -1 348 138 0 0 chr1 190799680 190799745 -91393919 + (TGG)n Simple_repeat Simple_repeat 1 65 0 22 0 0 0 chr1 190799854 190799876 -91393788 + AT_rich Low_complexity Low_complexity 1 22 0 1469 144 41 82 chr1 190800011 190800302 -91393362 - AluSx SINE Alu -11 301 23 2406 77 3 0 chr1 190800438 190800735 -91392929 + AluSc SINE Alu 1 298 -11 1976 146 3 37 chr1 190801004 190801327 -91392337 - AluSx SINE Alu 0 312 1 288 111 0 0 chr1 190802178 190802223 -91391441 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr1 190802597 190802625 -91391039 + AT_rich Low_complexity Low_complexity 1 28 0 2054 135 24 3 chr1 190802952 190803249 -91390415 + AluSx SINE Alu 1 303 -9 408 237 30 0 chr1 190803254 190803376 -91390288 + L1ME2 LINE L1 5827 5960 -604 2060 116 4 0 chr1 190803376 190803678 -91389986 - AluSx SINE Alu 0 315 13 1385 127 0 28 chr1 190803678 190803890 -91389774 + AluSg/x SINE Alu 97 302 -10 1701 184 193 25 chr1 190803890 190804368 -91389296 + L1ME2 LINE L1 5992 6549 -9 493 205 16 16 chr1 190804401 190804528 -91389136 + L1MB8 LINE L1 6036 6162 -16 717 262 101 64 chr1 190804531 190805076 -91388588 + L1ME4a LINE L1 5476 6040 -81 2256 153 59 61 chr1 190805602 190806113 -91387551 + LTR54 LTR ERV1 1 510 0 284 274 59 9 chr1 190806342 190806448 -91387216 - MIR SINE MIR -81 127 30 438 356 5 11 chr1 190806483 190806674 -91386990 + MIR3 SINE MIR 16 205 -3 625 148 0 30 chr1 190807961 190808092 -91385572 + FLAM_A SINE Alu 18 145 0 293 77 39 0 chr1 190808260 190808312 -91385352 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 1568 170 4 8 chr1 190808318 190808577 -91385087 - AluJo SINE Alu -15 297 40 195 308 103 47 chr1 190808763 190808870 -91384794 - MIR SINE MIR -63 145 33 204 40 0 0 chr1 190809080 190809105 -91384559 + (T)n Simple_repeat Simple_repeat 1 25 0 251 221 12 23 chr1 190809545 190809631 -91384033 - L1ME LINE L1 -270 5896 5812 204 40 0 0 chr1 190809639 190809664 -91384000 + (T)n Simple_repeat Simple_repeat 1 25 0 608 213 50 59 chr1 190810590 190810811 -91382853 + L1ME1 LINE L1 5812 6030 -136 727 174 14 0 chr1 190810811 190810949 -91382715 + L1MA10 LINE L1 6181 6320 -14 364 193 0 152 chr1 190810962 190811049 -91382615 - MER5B DNA MER1_type -64 125 50 748 203 0 0 chr1 190811049 190811177 -91382487 + FLAM_A SINE Alu 2 129 -4 364 193 0 152 chr1 190811177 190811214 -91382450 - MER5B DNA MER1_type -139 50 9 183 274 16 16 chr1 190811215 190811277 -91382387 - L2 LINE L2 -505 2809 2748 521 307 43 6 chr1 190811901 190812064 -91381600 + MIR SINE MIR 24 192 -70 2874 187 62 10 chr1 190812100 190812684 -91380980 + MER90 LTR ERV1 1 614 0 237 158 0 0 chr1 190812752 190812790 -91380874 - L2 LINE L2 -95 3177 3140 265 69 0 103 chr1 190813739 190813797 -91379867 + L1PA13 LINE L1 6110 6161 -2 183 253 147 0 chr1 190815449 190815524 -91378140 + MIR SINE MIR 66 151 -111 398 225 9 0 chr1 190815564 190815675 -91377989 + CT-rich Low_complexity Low_complexity 1 112 0 366 259 54 9 chr1 190816211 190816323 -91377341 + L2 LINE L2 3156 3272 0 322 279 64 7 chr1 190816746 190816886 -91376778 + MIR SINE MIR 82 229 -33 869 220 6 6 chr1 190817103 190817280 -91376384 - MER45A DNA AcHobo 0 178 2 200 229 0 0 chr1 190817762 190817810 -91375854 + MIR3 SINE MIR 159 206 -2 1753 142 0 0 chr1 190817870 190818123 -91375541 + AluSq SINE Alu 1 253 -60 31 0 0 0 chr1 190818191 190818222 -91375442 + AT_rich Low_complexity Low_complexity 1 31 0 204 135 81 0 chr1 190818222 190818370 -91375294 + (TA)n Simple_repeat Simple_repeat 2 161 0 361 163 35 47 chr1 190818370 190818542 -91375122 + (TTATA)n Simple_repeat Simple_repeat 3 172 0 251 134 70 0 chr1 190818542 190818684 -91374980 + (TA)n Simple_repeat Simple_repeat 2 153 0 78 0 0 0 chr1 190818684 190818762 -91374902 + AT_rich Low_complexity Low_complexity 1 78 0 274 263 201 57 chr1 190819130 190819324 -91374340 + MIR SINE MIR 22 243 -19 1015 291 90 29 chr1 190820535 190820979 -91372685 + MLT1J LTR MaLR 3 473 -38 758 190 171 0 chr1 190821369 190821527 -91372137 - MER5A DNA MER1_type -3 186 2 206 277 158 10 chr1 190821707 190821808 -91371856 - L2 LINE L2 -4 3309 3194 253 324 45 9 chr1 190822351 190822462 -91371202 - L2 LINE L2 -4 3268 3154 272 333 39 45 chr1 190823549 190823705 -91369959 - MER5A DNA MER1_type 0 189 24 283 224 15 0 chr1 190823780 190823847 -91369817 - L2 LINE L2 -1 3271 3204 217 175 0 88 chr1 190824041 190824098 -91369566 - L2 LINE L2 -337 2976 2925 1221 230 119 33 chr1 190824836 190825257 -91368407 + MLT1J LTR MaLR 53 509 -2 3066 64 8 0 chr1 190826594 190826982 -91366682 + L1PA7 LINE L1 5764 6154 0 347 49 0 0 chr1 190826998 190827039 -91366625 + LTR23 LTR ERV1 320 360 -77 202 139 28 0 chr1 190827047 190827083 -91366581 + A-rich Low_complexity Low_complexity 5 41 0 1747 185 13 3 chr1 190827144 190827452 -91366212 + AluJb SINE Alu 1 311 -1 253 247 177 32 chr1 190827504 190827662 -91366002 + L2 LINE L2 2920 3100 -172 191 402 0 0 chr1 190827998 190828085 -91365579 + L2 LINE L2 3186 3272 0 365 258 152 20 chr1 190828255 190828406 -91365258 + MIR SINE MIR 5 175 -87 552 318 175 10 chr1 190829936 190830342 -91363322 + L3 LINE CR1 1005 1477 -100 366 280 147 0 chr1 190832881 190833031 -91360633 - MIR SINE MIR -16 246 75 22 35 0 0 chr1 190835249 190835278 -91358386 + GC_rich Low_complexity Low_complexity 1 29 0 233 29 29 0 chr1 190835593 190835627 -91358037 + (CCG)n Simple_repeat Simple_repeat 2 36 0 273 98 0 0 chr1 190836869 190836910 -91356754 + (CAT)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr1 190838205 190838230 -91355434 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 218 214 0 18 chr1 190838994 190839050 -91354614 + CT-rich Low_complexity Low_complexity 2 56 0 223 350 32 19 chr1 190840699 190840856 -91352808 + MIR3 SINE MIR 31 189 -19 194 259 25 49 chr1 190840995 190841076 -91352588 + MIR SINE MIR 36 114 -94 2247 124 0 3 chr1 190842053 190842351 -91351313 - AluSx SINE Alu -15 297 1 729 158 9 0 chr1 190843728 190843842 -91349822 + FLAM_C SINE Alu 2 116 -17 2348 74 23 7 chr1 190843894 190844193 -91349471 + AluY SINE Alu 1 304 -7 2419 99 0 0 chr1 190844321 190844633 -91349031 - AluSx SINE Alu 0 312 1 236 345 0 0 chr1 190845022 190845106 -91348558 + (CA)n Simple_repeat Simple_repeat 1 84 0 2292 108 0 6 chr1 190845553 190845868 -91347796 + AluSq SINE Alu 1 313 0 266 329 0 0 chr1 190847621 190847703 -91345961 + (TATG)n Simple_repeat Simple_repeat 2 83 0 486 184 10 39 chr1 190848664 190848767 -91344897 - Tigger5 DNA MER2_type 0 2323 2224 264 222 19 0 chr1 190848761 190848815 -91344849 - Tigger5 DNA MER2_type -2268 55 1 * 2261 119 3 0 chr1 190849920 190850231 -91343433 - AluSx SINE Alu 0 312 1 881 132 0 22 chr1 190851739 190851875 -91341789 - FLAM_C SINE Alu 0 133 1 316 333 48 19 chr1 190852254 190852359 -91341305 - MER5A DNA MER1_type -44 145 38 671 147 28 142 chr1 190852495 190852570 -91341094 + MER53 DNA DNA 3 85 -104 252 120 0 0 chr1 190852570 190852620 -91341044 + (TA)n Simple_repeat Simple_repeat 1 50 0 2309 97 14 0 chr1 190852622 190852911 -91340753 - AluSx SINE Alu -19 293 1 671 147 28 142 chr1 190852911 190853043 -91340621 + MER53 DNA DNA 86 189 0 486 303 96 11 chr1 190853511 190853699 -91339965 + MIR SINE MIR 26 229 -33 1982 150 0 16 chr1 190854677 190854991 -91338673 + AluJb SINE Alu 2 310 -2 1150 168 10 5 chr1 190855500 190855702 -91337962 + AluJo SINE Alu 87 289 -23 2262 80 30 7 chr1 190859492 190859792 -91333872 + AluSg SINE Alu 2 308 -2 228 35 0 0 chr1 190861004 190861033 -91332631 + (T)n Simple_repeat Simple_repeat 1 29 0 330 223 10 97 chr1 190863140 190863243 -91330421 - L2 LINE L2 -31 3282 3189 526 243 192 14 chr1 190863561 190863853 -91329811 - MER113 DNA MER1_type? -170 351 8 1336 174 58 58 chr1 190863878 190864189 -91329475 + AluJo SINE Alu 1 311 -1 193 216 20 20 chr1 190865415 190865466 -91328198 - L2 LINE L2 -1 3271 3221 188 238 48 0 chr1 190865837 190865879 -91327785 + MER5B DNA MER1_type 89 132 -46 711 218 42 0 chr1 190866169 190866311 -91327353 + MER45A DNA AcHobo 1 148 -30 2330 104 10 0 chr1 190867013 190867322 -91326342 + AluSx SINE Alu 1 312 0 1850 149 0 30 chr1 190867412 190867708 -91325956 + AluJo SINE Alu 1 287 -25 21 0 0 0 chr1 190868200 190868221 -91325443 + AT_rich Low_complexity Low_complexity 1 21 0 266 323 54 8 chr1 190868250 190868380 -91325284 - MIR SINE MIR -48 214 79 847 275 50 17 chr1 190868409 190868649 -91325015 + MIR SINE MIR 15 262 0 1205 226 61 37 chr1 190868787 190869247 -91324417 + L1MC4 LINE L1 7567 8037 -5 417 283 84 6 chr1 190869276 190869434 -91324230 + MIR3 SINE MIR 15 184 -62 582 269 11 44 chr1 190869776 190869958 -91323706 - MER5B DNA MER1_type -2 176 1 492 324 114 6 chr1 190870926 190871102 -91322562 - MIR SINE MIR -60 202 8 347 340 92 20 chr1 190871556 190871709 -91321955 + MIR3 SINE MIR 3 166 -42 220 241 17 17 chr1 190871914 190871972 -91321692 - MIR3 SINE MIR -38 170 113 744 324 53 64 chr1 190872060 190872689 -91320975 + L2 LINE L2 2645 3268 -4 413 214 0 0 chr1 190873133 190873217 -91320447 + 7SLRNA srpRNA srpRNA 237 320 0 314 253 131 10 chr1 190873597 190873696 -91319968 + L2 LINE L2 3193 3303 -10 324 221 29 0 chr1 190873730 190873798 -91319866 + FRAM/FAM SINE Alu 1 69 -97 1305 204 8 0 chr1 190874924 190875174 -91318490 - L1PB4 LINE L1 -5 6151 5900 277 300 133 0 chr1 190875721 190875811 -91317853 - L2 LINE L2 -53 3219 3118 210 279 95 88 chr1 190876292 190876357 -91317307 - MIR3 SINE MIR -49 159 94 705 271 190 5 chr1 190876357 190876578 -91317086 + MIR SINE MIR 1 262 0 2101 151 0 0 chr1 190876981 190877285 -91316379 - AluSx SINE Alu -6 306 3 2150 122 10 0 chr1 190878047 190878350 -91315314 + AluSx SINE Alu 2 307 -5 1507 123 33 14 chr1 190878426 190878702 -91314962 - Tigger7 DNA MER2_type 0 2587 2307 912 215 0 6 chr1 190878704 190878876 -91314788 - Tigger7 DNA MER2_type -562 171 1 959 168 7 0 chr1 190879007 190879156 -91314508 + FRAM SINE Alu 1 146 -30 979 125 30 0 chr1 190879890 190880058 -91313606 - MER58 DNA MER1_type -143 198 26 846 230 101 5 chr1 190881221 190881430 -91312234 - MIR SINE MIR 0 262 34 261 259 0 12 chr1 190881542 190881623 -91312041 - L2 LINE L2 -54 3259 3180 202 250 0 0 chr1 190881815 190881855 -91311809 + L2 LINE L2 2716 2755 -559 603 310 93 13 chr1 190882043 190882269 -91311395 + MIR SINE MIR 19 262 0 27 49 0 0 chr1 190882623 190882664 -91311000 + AT_rich Low_complexity Low_complexity 1 41 0 1645 191 10 33 chr1 190882686 190882989 -91310675 - AluJb SINE Alu -16 296 1 1934 166 7 0 chr1 190883006 190883296 -91310368 - AluJb SINE Alu -19 293 2 2081 118 28 0 chr1 190883510 190883797 -91309867 + AluSg SINE Alu 1 295 -15 26 0 0 0 chr1 190883830 190883856 -91309808 + AT_rich Low_complexity Low_complexity 1 26 0 33 73 0 0 chr1 190883895 190883963 -91309701 + AT_rich Low_complexity Low_complexity 1 68 0 737 93 0 37 chr1 190883963 190884070 -91309594 - FLAM_C SINE Alu -16 127 25 730 254 0 0 chr1 190884363 190884536 -91309128 - MER97b DNA MER1_type? -875 178 6 790 189 54 38 chr1 190884871 190885019 -91308645 + MER5A DNA MER1_type 1 154 -35 1827 143 27 17 chr1 190885019 190885320 -91308344 + AluJo SINE Alu 1 304 -8 790 189 54 38 chr1 190885320 190885356 -91308308 + MER5A DNA MER1_type 154 188 -1 741 171 61 6 chr1 190886838 190887019 -91306645 - L1P LINE L1 -783 5363 5173 1062 116 101 0 chr1 190887128 190887317 -91306347 - Tigger7 DNA MER2_type 0 2491 2284 256 224 0 0 chr1 190887311 190887378 -91306286 - Tigger7 DNA MER2_type -398 152 86 * 745 151 0 0 chr1 190887400 190887519 -91306145 - Tigger7 DNA MER2_type -613 120 2 285 356 0 17 chr1 190887531 190887646 -91306018 + MER5A DNA MER1_type 77 189 0 704 212 33 5 chr1 190887654 190887838 -91305826 - MER5A DNA MER1_type 0 189 1 519 289 18 103 chr1 190887911 190888357 -91305307 + MLT1J LTR MaLR 7 414 -97 507 315 213 35 chr1 190888534 190889296 -91304368 + L2 LINE L2 228 1124 -2190 464 268 148 0 chr1 190889425 190889608 -91304056 - MER46C DNA MER2_type -3 335 126 237 73 24 0 chr1 190889692 190889733 -91303931 - MER46C DNA MER2_type -265 73 32 423 328 77 73 chr1 190889823 190890289 -91303375 + L2 LINE L2 2490 2957 -357 2184 193 66 88 chr1 190890555 190891296 -91302368 + LTR8A LTR ERV1 1 725 -2 257 333 69 0 chr1 190891442 190891514 -91302150 + L2 LINE L2 3178 3254 -59 1620 205 17 0 chr1 190891546 190891844 -91301820 + AluJb SINE Alu 1 303 -9 1199 223 69 9 chr1 190892418 190892750 -91300914 + L1MC4 LINE L1 7548 7899 -143 2341 104 0 0 chr1 190892813 190893112 -91300552 + AluY SINE Alu 1 299 -12 410 230 23 0 chr1 190893112 190893199 -91300465 + MER5B DNA MER1_type 90 178 0 181 273 0 0 chr1 190893283 190893327 -91300337 - L2 LINE L2 -5 3267 3224 376 232 28 24 chr1 190893407 190893549 -91300115 - MIR SINE MIR 0 262 78 270 299 12 48 chr1 190893685 190893852 -91299812 - L1ME LINE L1 -382 5739 5579 279 0 0 0 chr1 190894283 190894314 -91299350 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 402 260 55 8 chr1 190894454 190894581 -91299083 - MER94 DNA DNA 0 134 2 209 333 0 0 chr1 190894807 190894867 -91298797 - MIR SINE MIR -64 144 85 35 71 0 0 chr1 190895229 190895299 -91298365 + AT_rich Low_complexity Low_complexity 1 70 0 2014 120 24 3 chr1 190895680 190895972 -91297692 + AluSx SINE Alu 1 298 -14 30 27 0 0 chr1 190896165 190896202 -91297462 + AT_rich Low_complexity Low_complexity 1 37 0 27 62 0 0 chr1 190896481 190896529 -91297135 + AT_rich Low_complexity Low_complexity 1 48 0 381 355 28 19 chr1 190896647 190896858 -91296806 + MIR SINE MIR 50 262 0 1460 138 4 0 chr1 190896869 190897100 -91296564 + MER50 LTR ERV1 1 232 -502 1669 158 4 14 chr1 190897103 190897382 -91296282 + MER50 LTR ERV1 436 711 -23 869 226 0 0 chr1 190897416 190897580 -91296084 - FAM SINE Alu -11 164 1 839 174 47 7 chr1 190897605 190897754 -91295910 - Tigger2 DNA MER2_type 0 2718 2564 * 1059 147 61 0 chr1 190897753 190897951 -91295713 - Tigger2 DNA MER2_type -2508 210 1 1350 98 0 5 chr1 190898160 190898353 -91295311 + L1PA7 LINE L1 5963 6154 0 874 311 63 18 chr1 190898956 190899352 -91294312 - L2 LINE L2 -2240 1074 661 1707 154 7 40 chr1 190899617 190899915 -91293749 + AluSx SINE Alu 1 288 -24 1396 142 4 22 chr1 190900142 190900368 -91293296 + AluJb SINE Alu 73 294 -18 2226 105 0 3 chr1 190900465 190900771 -91292893 + AluSx SINE Alu 1 305 -7 186 43 0 0 chr1 190900791 190900814 -91292850 + (T)n Simple_repeat Simple_repeat 1 23 0 213 42 42 42 chr1 190901257 190901305 -91292359 + (CAAAAA)n Simple_repeat Simple_repeat 3 50 0 372 43 0 0 chr1 190901308 190901354 -91292310 + (TG)n Simple_repeat Simple_repeat 2 47 0 181 238 0 24 chr1 190901963 190902005 -91291659 + L2 LINE L2 3272 3312 -1 558 306 18 24 chr1 190902030 190902200 -91291464 + MIR SINE MIR 2 170 -92 25 31 0 0 chr1 190902265 190902297 -91291367 + AT_rich Low_complexity Low_complexity 1 32 0 25 75 0 0 chr1 190902594 190902647 -91291017 + AT_rich Low_complexity Low_complexity 1 53 0 7668 103 49 5 chr1 190903474 190904653 -91289011 - Tigger3b DNA MER2_type 0 1231 1 536 313 75 75 chr1 190906199 190906489 -91287175 + L2 LINE L2 2483 2775 -539 738 197 0 0 chr1 190906489 190906616 -91287048 + FLAM_C SINE Alu 1 127 -6 536 313 75 75 chr1 190906616 190906776 -91286888 + L2 LINE L2 2774 2933 -381 2459 74 0 10 chr1 190906811 190907123 -91286541 - AluY SINE Alu -2 309 1 213 356 0 0 chr1 190907719 190907778 -91285886 + L2 LINE L2 1847 1905 -1409 2389 106 0 0 chr1 190907802 190908105 -91285559 - AluSx SINE Alu -9 303 1 5949 74 20 11 chr1 190908162 190908968 -91284696 + L1PA11 LINE L1 5362 6174 0 1345 177 71 7 chr1 190909617 190909928 -91283736 - MER33 DNA MER1_type 0 324 1 500 45 15 0 chr1 190910110 190910177 -91283487 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 396 59 0 0 chr1 190910349 190910400 -91283264 + (CA)n Simple_repeat Simple_repeat 2 52 0 365 305 282 6 chr1 190910522 190911057 -91282607 + L2 LINE L2 1615 2297 -1017 1160 183 8 54 chr1 190911059 190911300 -91282364 - AluJo SINE Alu -82 230 1 447 328 65 37 chr1 190911303 190911626 -91282038 + L2 LINE L2 2323 2654 -660 229 281 16 16 chr1 190912012 190912076 -91281588 + MIR SINE MIR 31 94 -114 22 0 0 0 chr1 190912341 190912363 -91281301 + AT_rich Low_complexity Low_complexity 1 22 0 2510 68 0 3 chr1 190912504 190912811 -91280853 + AluY SINE Alu 1 306 -5 193 309 12 103 chr1 190913375 190913540 -91280124 + L2 LINE L2 2296 2445 -869 222 224 20 0 chr1 190913638 190913687 -91279977 - L2 LINE L2 -8 3305 3256 397 274 38 0 chr1 190913769 190913875 -91279789 + MER63 DNA MER1_type 1 736 -100 244 286 0 0 chr1 190913897 190913946 -91279718 + MER63 DNA MER1_type 1011 1059 -1 305 252 19 87 chr1 190914695 190914798 -91278866 + L2 LINE L2 3203 3298 -15 203 250 83 94 chr1 190914861 190914957 -91278707 + L2 LINE L2 3174 3268 -4 22 56 0 0 chr1 190915005 190915041 -91278623 + AT_rich Low_complexity Low_complexity 1 36 0 11897 88 20 9 chr1 190915413 190917162 -91276502 - L1P LINE L1 -2659 3487 1720 418 273 122 30 chr1 190919041 190919379 -91274285 + L1ME4a LINE L1 5579 5946 -175 2863 10 0 0 chr1 190919785 190920096 -91273568 - AluYa5 SINE Alu 0 311 1 571 222 140 35 chr1 190920861 190921032 -91272632 + MER5A DNA MER1_type 1 189 0 1653 158 87 3 chr1 190921259 190921569 -91272095 - MER2 DNA MER2_type -1 344 9 818 167 8 0 chr1 190922014 190922140 -91271524 + FLAM_C SINE Alu 1 127 -16 1518 138 96 12 chr1 190923278 190923707 -91269957 + LTR54 LTR ERV1 3 510 0 1120 180 226 4 chr1 190924217 190924360 -91269304 - AluJo SINE Alu -10 292 182 270 95 0 0 chr1 190924360 190924402 -91269262 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1120 180 226 4 chr1 190924402 190924497 -91269167 - AluJo SINE Alu -120 182 1 585 277 53 70 chr1 190924720 190925020 -91268644 - L2 LINE L2 0 3313 3019 418 269 103 6 chr1 190925374 190925530 -91268134 + L2 LINE L2 3142 3312 -1 281 368 83 0 chr1 190925957 190926090 -91267574 + MIR3 SINE MIR 3 146 -62 4423 178 41 12 chr1 190926481 190927850 -91265814 + L1MB7 LINE L1 4777 6175 -9 710 258 56 82 chr1 190928206 190928435 -91265229 - MIR SINE MIR 0 262 29 399 21 0 0 chr1 190928435 190928483 -91265181 + (TTA)n Simple_repeat Simple_repeat 1 48 0 703 184 9 0 chr1 190928487 190928601 -91265063 - FLAM_A SINE Alu -18 115 1 710 258 56 82 chr1 190928601 190928633 -91265031 - MIR SINE MIR -236 26 3 246 319 15 67 chr1 190928991 190929126 -91264538 - L2 LINE L2 -1 3271 3144 2471 208 51 4 chr1 190929392 190929922 -91263742 + MER74A LTR ERVL 1 555 -3 1770 166 7 0 chr1 190929935 190930235 -91263429 + AluJo SINE Alu 3 304 0 959 346 87 17 chr1 190930271 190930970 -91262694 - L2 LINE L2 -493 2821 2074 221 337 23 0 chr1 190931044 190931130 -91262534 - MIR SINE MIR -4 258 171 1988 153 121 31 chr1 190931132 190931519 -91262145 + MSTB LTR MaLR 5 426 0 3238 188 17 60 chr1 190931635 190931920 -91261744 - MER72 LTR ERV1 0 722 426 3997 97 18 7 chr1 190931920 190932479 -91261185 + MER61E LTR ERV1 1 565 -4 3238 188 17 60 chr1 190932479 190932849 -91260815 - MER72 LTR ERV1 -296 426 101 1780 179 3 0 chr1 190932849 190933140 -91260524 - AluJo SINE Alu -20 292 1 3238 188 17 60 chr1 190933140 190933237 -91260427 - MER72 LTR ERV1 -621 101 1 207 262 179 0 chr1 190934481 190934565 -91259099 - MIR SINE MIR -44 218 120 1047 282 96 22 chr1 190934655 190935296 -91258368 + L2 LINE L2 2636 3313 0 1301 205 124 45 chr1 190935567 190935969 -91257695 - Charlie4a DNA MER1_type -1484 477 39 2510 164 16 2 chr1 190935969 190936395 -91257269 - MSTB1 LTR MaLR 0 432 1 1301 205 124 45 chr1 190936395 190936411 -91257253 - Charlie4a DNA MER1_type -1922 39 26 627 221 14 0 chr1 190936997 190937142 -91256522 - MER103 DNA DNA -13 153 7 509 349 189 13 chr1 190938468 190938855 -91254809 + L2 LINE L2 2488 2942 -372 267 340 28 0 chr1 190938990 190939096 -91254568 + L2 LINE L2 3158 3266 -47 263 358 0 0 chr1 190940618 190940699 -91252965 + MIR SINE MIR 1 81 -181 21 36 0 0 chr1 190940856 190940884 -91252780 + AT_rich Low_complexity Low_complexity 1 28 0 32 109 0 0 chr1 190941168 190941305 -91252359 + AT_rich Low_complexity Low_complexity 1 137 0 3052 196 12 46 chr1 190941342 190941584 -91252080 - MER82 DNA MER2_type -1 652 403 1599 170 0 82 chr1 190941584 190941913 -91251751 - AluJo SINE Alu -10 302 1 3052 196 12 46 chr1 190941913 190942345 -91251319 - MER82 DNA MER2_type -250 403 1 271 284 55 30 chr1 190942365 190942522 -91251142 - L1M2 LINE L1 -642 5524 5388 211 133 0 22 chr1 190942785 190942830 -91250834 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 * 240 176 39 0 chr1 190942803 190942854 -91250810 + (CATA)n Simple_repeat Simple_repeat 2 54 0 2874 172 228 67 chr1 190943629 190944508 -91249156 - LTR28 LTR ERV1 0 1020 1 2488 140 80 32 chr1 190944706 190945054 -91248610 + L1MA9 LINE L1 5758 6141 -171 3809 202 53 56 chr1 190945054 190945916 -91247748 + MER21B LTR ERV1 1 860 -3 2488 140 80 32 chr1 190945916 190946095 -91247569 + L1MA9 LINE L1 6141 6310 -2 1271 166 85 39 chr1 190946258 190946565 -91247099 + MER33 DNA MER1_type 4 324 0 1316 195 92 3 chr1 190947297 190947579 -91246085 + AluJb SINE Alu 3 309 -3 216 0 0 0 chr1 190947644 190947668 -91245996 + (T)n Simple_repeat Simple_repeat 1 24 0 216 355 0 16 chr1 190948066 190948128 -91245536 + L2 LINE L2 3003 3063 -250 720 223 143 51 chr1 190948187 190948501 -91245163 - MER2 DNA MER2_type -1 343 1 680 226 0 0 chr1 190948568 190948683 -91244981 - FLAM_A SINE Alu -18 115 1 234 339 141 8 chr1 190948709 190948830 -91244834 + L2 LINE L2 3136 3272 0 449 254 0 18 chr1 190949357 190949471 -91244193 + MER81 DNA DNA 1 112 -2 1249 221 211 10 chr1 190950144 190950527 -91243137 + L2 LINE L2 2544 3002 -311 325 261 0 0 chr1 190950534 190950622 -91243042 + (TA)n Simple_repeat Simple_repeat 1 88 0 192 135 0 0 chr1 190950653 190950690 -91242974 + (TA)n Simple_repeat Simple_repeat 1 37 0 1049 216 34 45 chr1 190950720 190950888 -91242776 - AluJo SINE Alu -13 289 124 227 54 27 0 chr1 190950888 190950925 -91242739 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1049 216 34 45 chr1 190950925 190951047 -91242617 - AluJo SINE Alu -178 124 2 771 210 72 108 chr1 190951057 190951362 -91242302 + L2 LINE L2 3020 3313 0 1250 253 157 36 chr1 190951821 190952399 -91241265 - L1MC4 LINE L1 -141 7901 7254 1578 244 108 27 chr1 190952415 190952771 -91240893 - L1MC4 LINE L1 -963 7079 6656 189 0 0 0 chr1 190952771 190952792 -91240872 + (GA)n Simple_repeat Simple_repeat 2 22 0 1578 244 108 27 chr1 190952792 190953021 -91240643 - L1MC4 LINE L1 -1386 6656 6447 273 167 0 0 chr1 190953480 190953534 -91240130 + (TA)n Simple_repeat Simple_repeat 2 55 0 283 328 63 73 chr1 190953707 190953994 -91239670 - L2 LINE L2 0 3313 3030 1977 136 7 14 chr1 190954095 190954390 -91239274 - AluSq SINE Alu -18 295 3 382 234 139 0 chr1 190954585 190954722 -91238942 - Charlie7 DNA MER1_type -2455 157 2 226 302 0 0 chr1 190955030 190955093 -91238571 - L2 LINE L2 0 3313 3251 227 286 26 39 chr1 190955303 190955380 -91238284 + L2 LINE L2 3227 3302 -11 392 197 94 0 chr1 190955687 190955804 -91237860 - L1ME4a LINE L1 -3 6118 5991 221 217 0 87 chr1 190956029 190956098 -91237566 + L2 LINE L2 3206 3268 -4 794 165 187 175 chr1 190956384 190956802 -91236862 - MLT1A2 LTR MaLR 0 428 6 31 82 0 0 chr1 190956945 190957018 -91236646 + AT_rich Low_complexity Low_complexity 1 73 0 279 0 0 0 chr1 190957026 190957057 -91236607 + (CA)n Simple_repeat Simple_repeat 2 32 0 717 195 0 0 chr1 190957070 190957193 -91236471 - FLAM_C SINE Alu -20 123 1 192 131 0 7 chr1 190957221 190957254 -91236410 + L2 LINE L2 3238 3311 -2 2909 3 0 0 chr1 190957380 190957691 -91235973 + AluYb8 SINE Alu 1 311 -7 21 0 0 0 chr1 190957796 190957817 -91235847 + AT_rich Low_complexity Low_complexity 1 21 0 2077 128 0 3 chr1 190958663 190958959 -91234705 + AluSx SINE Alu 1 295 -17 180 380 26 44 chr1 190959849 190960078 -91233586 + L2 LINE L2 2418 2642 -672 21 0 0 0 chr1 190960121 190960142 -91233522 + AT_rich Low_complexity Low_complexity 1 21 0 2970 287 68 18 chr1 190960184 190961807 -91231857 + L1MEc LINE L1 45 1776 -4516 1360 108 10 0 chr1 190961840 190962086 -91231578 - AluSq SINE Alu 0 365 118 530 215 70 19 chr1 190962088 190962246 -91231418 + L1MEc LINE L1 1846 2011 -4385 413 343 157 0 chr1 190962322 190962494 -91231170 - L2 LINE L2 -339 2975 2777 299 272 9 0 chr1 190962860 190962974 -91230690 + CT-rich Low_complexity Low_complexity 1 115 0 264 342 216 0 chr1 190963231 190963342 -91230322 + L2 LINE L2 3121 3255 -17 669 281 92 23 chr1 190963490 190963707 -91229957 - MIR SINE MIR 0 262 31 974 171 62 95 chr1 190963808 190964082 -91229582 - LTR54 LTR ERV1 -245 265 1 469 335 129 0 chr1 190964369 190964563 -91229101 - MIR SINE MIR -40 222 4 389 340 26 26 chr1 190965205 190965396 -91228268 - MIR SINE MIR -65 197 7 21 36 0 0 chr1 190965417 190965445 -91228219 + AT_rich Low_complexity Low_complexity 1 28 0 372 103 0 0 chr1 190967443 190967501 -91226163 + (CA)n Simple_repeat Simple_repeat 2 59 0 252 371 116 19 chr1 190968288 190968555 -91225109 - L2 LINE L2 -734 2580 2288 365 224 140 0 chr1 190968949 190969056 -91224608 - Charlie1a DNA MER1_type 0 1455 1334 4917 158 88 81 chr1 190969100 190970427 -91223237 - Charlie1a DNA MER1_type -76 1379 44 23 68 0 0 chr1 190970610 190970654 -91223010 + AT_rich Low_complexity Low_complexity 1 44 0 401 272 9 0 chr1 190970803 190970917 -91222747 + L1M4 LINE L1 3623 3737 -2409 26 50 0 0 chr1 190970917 190970957 -91222707 + AT_rich Low_complexity Low_complexity 1 40 0 621 252 0 0 chr1 190970957 190971072 -91222592 - FLAM_A SINE Alu -27 115 1 25 65 0 0 chr1 190971097 190971143 -91222521 + AT_rich Low_complexity Low_complexity 1 46 0 3057 220 61 55 chr1 190971143 190972291 -91221373 + L1M4 LINE L1 3757 4911 -1235 455 300 47 24 chr1 190972424 190972455 -91221209 - MIR SINE MIR -60 202 173 1596 192 59 28 chr1 190972455 190972809 -91220855 + MLT1A1 LTR MaLR 1 365 0 455 300 47 24 chr1 190972809 190972947 -91220717 - MIR SINE MIR -89 173 29 29 28 0 0 chr1 190972951 190972987 -91220677 + AT_rich Low_complexity Low_complexity 1 36 0 222 245 0 0 chr1 190973017 190973066 -91220598 + (TA)n Simple_repeat Simple_repeat 2 50 0 2302 85 0 13 chr1 190973335 190973640 -91220024 + AluY SINE Alu 1 301 -10 1991 162 0 0 chr1 190973833 190974141 -91219523 + AluSx SINE Alu 3 310 -2 1295 171 0 26 chr1 190975079 190975307 -91218357 + AluJb SINE Alu 78 299 -13 259 167 0 0 chr1 190975591 190975645 -91218019 - FAM SINE Alu -8 167 125 1316 171 9 9 chr1 190975645 190975861 -91217803 - AluJo SINE Alu -94 218 3 14028 185 15 10 chr1 190976473 190980552 -91213112 - L1PB3 LINE L1 0 6870 2775 * 42682 36 21 1 chr1 190980546 190986576 -91207088 - L1PA2 LINE L1 -2 6153 1 1471 183 10 13 chr1 190986581 190986887 -91206777 - L1PB3 LINE L1 -4122 2741 2437 1507 182 7 38 chr1 190987040 190987359 -91206305 + AluJo SINE Alu 1 310 0 309 209 0 0 chr1 190987359 190987426 -91206238 + (CATA)n Simple_repeat Simple_repeat 1 67 0 814 225 45 0 chr1 190987791 190987969 -91205695 + MER5A DNA MER1_type 3 188 -1 29 78 0 0 chr1 190988043 190988107 -91205557 + AT_rich Low_complexity Low_complexity 1 64 0 347 218 36 27 chr1 190988331 190988441 -91205223 - L1ME3A LINE L1 -223 5947 5837 234 194 65 0 chr1 190988462 190988524 -91205140 + L1ME4a LINE L1 5976 6041 -80 588 304 11 22 chr1 190990695 190990879 -91202785 + MER5A DNA MER1_type 7 188 -1 259 260 13 26 chr1 190990993 190991070 -91202594 + MLT1H LTR MaLR 28 103 -439 284 203 105 73 chr1 190991125 190991354 -91202310 + MLT1H LTR MaLR 156 487 -68 411 360 24 14 chr1 190991449 190991738 -91201926 + L1PA13 LINE L1 7 298 -7283 12458 180 21 17 chr1 190991998 190993806 -91199858 + L1PA13 LINE L1 2319 4118 -3483 2707 88 11 11 chr1 190993806 190994181 -91199483 - THE1C LTR MaLR 0 375 1 12458 180 21 17 chr1 190994181 190995770 -91197894 + L1PA13 LINE L1 4118 5699 -1902 2221 128 0 0 chr1 190995770 190996076 -91197588 + AluSx SINE Alu 1 306 -6 12458 180 21 17 chr1 190996076 190997938 -91195726 + L1PA13 LINE L1 5699 7594 -7 26 0 0 0 chr1 190997950 190997976 -91195688 + AT_rich Low_complexity Low_complexity 1 26 0 703 200 0 0 chr1 190998930 190999055 -91194609 - FLAM_C SINE Alu -18 125 1 188 135 27 0 chr1 190999605 190999642 -91194022 + (TAG)n Simple_repeat Simple_repeat 1 38 0 860 264 23 9 chr1 190999663 190999883 -91193781 - MIR SINE MIR -10 252 30 537 202 90 125 chr1 191000151 191000680 -91192984 + MER110 LTR ERV1 1 491 0 32 26 0 0 chr1 191000728 191000767 -91192897 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr1 191001103 191001145 -91192519 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr1 191001177 191001212 -91192452 + AT_rich Low_complexity Low_complexity 1 35 0 5538 100 6 9 chr1 191001265 191002043 -91191621 - L1PA11 LINE L1 -1 6173 5396 2642 103 0 10 chr1 191002043 191002430 -91191234 - L1PA7 LINE L1 -3 6151 5769 5538 100 6 9 chr1 191002430 191002442 -91191222 - L1PA11 LINE L1 -778 5396 5385 43911 39 1 2 chr1 191002446 191004273 -91189391 - L1PA3 LINE L1 -1 6154 4327 1785 36 5 14 chr1 191004273 191004493 -91189171 + AluY SINE Alu 94 311 0 43911 39 1 2 chr1 191004493 191008824 -91184840 - L1PA3 LINE L1 -1828 4327 2 28430 99 7 1 chr1 191008822 191013347 -91180317 - L1PA7 LINE L1 -373 5781 1236 * 2684 153 21 0 chr1 191013335 191013805 -91179859 - L1PA11 LINE L1 -751 5395 4916 * 192 278 0 0 chr1 191014002 191014074 -91179590 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 1015 184 8 64 chr1 191014074 191014324 -91179340 - MER46A DNA MER2_type 0 236 1 189 0 0 0 chr1 191014538 191014559 -91179105 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 332 225 106 66 chr1 191014600 191014751 -91178913 + MIR SINE MIR 102 258 -4 787 263 120 39 chr1 191014839 191015329 -91178335 + L1ME4a LINE L1 5584 6113 -8 189 195 0 0 chr1 191015532 191015573 -91178091 + (TA)n Simple_repeat Simple_repeat 1 41 0 1824 112 116 8 chr1 191015688 191015955 -91177709 + AluSg1 SINE Alu 1 296 -13 35 41 0 0 chr1 191016737 191016786 -91176878 + AT_rich Low_complexity Low_complexity 1 49 0 236 375 170 28 chr1 191017007 191017290 -91176374 + L2 LINE L2 2912 3234 -38 1302 223 13 0 chr1 191017300 191017529 -91176135 + MER8 DNA MER2_type 8 239 0 245 235 0 139 chr1 191017838 191017953 -91175711 - MER102b DNA MER1_type -10 331 233 1203 216 124 28 chr1 191017955 191018317 -91175347 + L2 LINE L2 1746 2142 -1172 506 240 40 8 chr1 191018416 191018541 -91175123 - MIR SINE MIR -114 148 20 27 29 0 0 chr1 191019056 191019090 -91174574 + AT_rich Low_complexity Low_complexity 1 34 0 6752 59 17 0 chr1 191019295 191020656 -91173008 + L1PA7 LINE L1 4784 6161 0 1751 153 55 12 chr1 191020657 191020984 -91172680 + Tigger1 DNA MER2_type 2078 2418 0 1521 228 65 8 chr1 191020984 191021492 -91172172 + L1M4 LINE L1 4796 5332 -814 246 354 123 33 chr1 191021561 191021951 -91171713 - L2 LINE L2 -453 2861 2437 1650 183 3 20 chr1 191021998 191022304 -91171360 + AluJo SINE Alu 1 301 -11 949 274 68 42 chr1 191022403 191023024 -91170640 - L1M4 LINE L1 -1213 4933 4297 427 269 55 7 chr1 191023077 191023222 -91170442 - MIR SINE MIR 0 262 111 2292 153 41 9 chr1 191023816 191024235 -91169429 + MSTB1 LTR MaLR 1 432 0 4625 257 150 23 chr1 191024534 191025958 -91167706 + L2 LINE L2 1029 2700 -614 2152 137 0 0 chr1 191025958 191026258 -91167406 - AluSx SINE Alu -12 300 1 4625 257 150 23 chr1 191026258 191026509 -91167155 + L2 LINE L2 2700 2918 -396 956 291 128 42 chr1 191026504 191026933 -91166731 - L2 LINE L2 -385 2929 2464 * 189 339 0 0 chr1 191028885 191028941 -91164723 - L2 LINE L2 -1 3271 3216 5194 141 30 3 chr1 191029676 191031054 -91162610 + L1PA16 LINE L1 4748 6155 -11 24 0 0 29 chr1 191031054 191031067 -91162597 + AT_rich Low_complexity Low_complexity 1 13 -21 4378 111 4 20 chr1 191031067 191031767 -91161897 + L1PA16 LINE L1 5476 6164 -2 24 0 0 29 chr1 191031767 191031788 -91161876 + AT_rich Low_complexity Low_complexity 13 34 0 29 28 0 0 chr1 191032274 191032310 -91161354 + AT_rich Low_complexity Low_complexity 1 36 0 2048 129 33 7 chr1 191032434 191032736 -91160928 - AluSx SINE Alu -2 310 1 413 303 50 25 chr1 191033597 191033795 -91159869 - MIR SINE MIR -57 205 3 183 114 0 0 chr1 191034231 191034266 -91159398 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 320 375 76 52 chr1 191034304 191034467 -91159197 - L2 LINE L2 0 3272 3114 1672 249 33 13 chr1 191034467 191034921 -91158743 + LTR40c LTR ERVL 3 465 0 320 375 76 52 chr1 191034921 191035125 -91158539 - L2 LINE L2 -158 3114 2896 218 354 10 20 chr1 191035233 191035332 -91158332 - L2 LINE L2 -556 2758 2661 192 309 32 21 chr1 191035597 191035691 -91157973 - L2 LINE L2 -1042 2272 2178 741 173 24 0 chr1 191035721 191035848 -91157816 + FLAM_C SINE Alu 2 131 -2 363 375 126 30 chr1 191035895 191036354 -91157310 - L2 LINE L2 -2568 746 244 519 194 139 67 chr1 191036663 191036722 -91156942 - MIR SINE MIR -68 194 141 2355 104 0 0 chr1 191036722 191037021 -91156643 + AluSx SINE Alu 1 299 -13 519 194 139 67 chr1 191037021 191037126 -91156538 - MIR SINE MIR -121 141 18 316 249 46 41 chr1 191038315 191038497 -91155167 + MER41E LTR ERV1 55 370 -265 25 0 0 0 chr1 191039307 191039332 -91154332 + AT_rich Low_complexity Low_complexity 1 25 0 382 301 68 49 chr1 191039678 191039841 -91153823 - MIR3 SINE MIR -21 187 22 2378 66 7 3 chr1 191040121 191040424 -91153240 + AluY SINE Alu 1 304 -7 24 32 0 0 chr1 191040618 191040649 -91153015 + AT_rich Low_complexity Low_complexity 1 31 0 378 243 358 5 chr1 191041031 191041249 -91152415 - MLT1H LTR MaLR -4 545 251 266 155 17 52 chr1 191041298 191041356 -91152308 - MLT1I LTR MaLR -266 143 98 24 53 0 0 chr1 191042120 191042158 -91151506 + AT_rich Low_complexity Low_complexity 1 38 0 407 277 74 88 chr1 191042643 191043008 -91150656 + L1MEd LINE L1 1122 1579 -1322 247 275 50 0 chr1 191043012 191043092 -91150572 + L1MEd LINE L1 1908 1991 -4549 315 292 97 0 chr1 191043429 191043573 -91150091 + L1MEd LINE L1 2440 2597 -4124 26 0 0 0 chr1 191043597 191043623 -91150041 + AT_rich Low_complexity Low_complexity 1 26 0 813 114 0 0 chr1 191043640 191043763 -91149901 + L1PA8 LINE L1 6050 6172 0 1591 248 62 38 chr1 191043823 191044237 -91149427 + L1MEd LINE L1 2666 3107 -3433 2234 112 3 6 chr1 191044237 191044550 -91149114 - AluSx SINE Alu 0 312 1 1591 248 62 38 chr1 191044550 191044878 -91148786 + L1MEd LINE L1 3107 3426 -3114 207 0 0 0 chr1 191045163 191045186 -91148478 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1945 230 36 26 chr1 191045416 191045911 -91147753 + MLT1D LTR MaLR 1 500 -5 362 245 45 67 chr1 191045943 191046152 -91147512 + L1MEc LINE L1 2454 2650 -3890 371 297 187 22 chr1 191047593 191047866 -91145798 - L2 LINE L2 -955 2359 2042 243 53 27 67 chr1 191048001 191048076 -91145588 + (TTTAA)n Simple_repeat Simple_repeat 1 72 0 231 273 22 22 chr1 191049876 191049986 -91143678 + MIR SINE MIR 8 116 -93 1076 191 10 15 chr1 191050145 191050349 -91143315 + AluJb SINE Alu 85 287 -25 293 176 0 0 chr1 191050392 191050443 -91143221 + MIR SINE MIR 200 250 -12 22 0 0 0 chr1 191051656 191051678 -91141986 + AT_rich Low_complexity Low_complexity 1 22 0 2205 97 0 35 chr1 191052820 191053139 -91140525 - AluSx SINE Alu -4 308 1 907 279 77 23 chr1 191054010 191054450 -91139214 - LTR16B LTR ERVL 0 464 1 34 72 0 0 chr1 191054975 191055044 -91138620 + AT_rich Low_complexity Low_complexity 1 69 0 451 326 0 16 chr1 191055956 191056085 -91137579 - MIR3 SINE MIR -45 163 37 180 77 0 0 chr1 191057068 191057094 -91136570 + (CTG)n Simple_repeat Simple_repeat 2 27 0 502 231 74 0 chr1 191057223 191057344 -91136320 + MIR SINE MIR 87 216 -46 23 33 0 0 chr1 191057589 191057619 -91136045 + AT_rich Low_complexity Low_complexity 1 30 0 1807 133 63 0 chr1 191057813 191058099 -91135565 + L1MA1 LINE L1 1895 2198 -5367 5967 92 21 4 chr1 191058407 191059310 -91134354 + L1MA1 LINE L1 2203 3120 -4445 512 55 41 0 chr1 191059308 191059381 -91134283 + L1P4 LINE L1 5412 5487 -674 * 2066 111 4 4 chr1 191059382 191059682 -91133982 + AluSg SINE Alu 1 300 0 10159 141 36 21 chr1 191059685 191062628 -91131036 + L1MA1 LINE L1 4725 7717 -4 329 176 154 0 chr1 191062644 191062735 -91130929 - MIR SINE MIR -157 105 1 6666 54 16 3 chr1 191063314 191064670 -91128994 + L1PA8A LINE L1 4756 6119 -12 339 153 46 0 chr1 191064670 191064801 -91128863 + (TA)n Simple_repeat Simple_repeat 1 137 0 7431 121 97 101 chr1 191064927 191066633 -91127031 - pTR5 LTR ERV1 0 2438 741 249 325 9 26 chr1 191067791 191067905 -91125759 - MIR SINE MIR -75 133 22 183 316 0 70 chr1 191068606 191068663 -91125001 + L2 LINE L2 419 471 -2843 1419 249 111 14 chr1 191068670 191069104 -91124560 + LTR33 LTR ERVL 11 486 -35 1812 142 69 28 chr1 191069104 191069464 -91124200 + THE1C LTR MaLR 1 375 0 9428 142 7 31 chr1 191069467 191071083 -91122581 + THE1C-int LTR MaLR 4 1580 0 1972 139 52 30 chr1 191071083 191071450 -91122214 + THE1C LTR MaLR 1 375 0 312 198 55 33 chr1 191071470 191071561 -91122103 + L1MC4 LINE L1 6611 6703 -1339 * 330 233 44 22 chr1 191071531 191071621 -91122043 + L1MC4 LINE L1 6612 6703 -1339 242 93 0 23 chr1 191071625 191071668 -91121996 + (TA)n Simple_repeat Simple_repeat 1 42 0 312 226 11 43 chr1 191071677 191071770 -91121894 + L1MC4 LINE L1 6614 6703 -1339 * 320 221 0 53 chr1 191071737 191071863 -91121801 + L1MC4 LINE L1 6614 6703 -1339 629 187 0 7 chr1 191071867 191072022 -91121642 + (TA)n Simple_repeat Simple_repeat 1 154 0 181 313 0 0 chr1 191072054 191072102 -91121562 + L2 LINE L2 455 502 -2812 7023 218 66 17 chr1 191072123 191072482 -91121182 - L1M4 LINE L1 -1020 5126 4786 2190 106 3 13 chr1 191072482 191072783 -91120881 - AluSq SINE Alu -15 298 1 7023 218 66 17 chr1 191072783 191074373 -91119291 - L1M4 LINE L1 -1360 4786 3081 649 194 8 30 chr1 191074385 191074519 -91119145 - FLAM_C SINE Alu -12 131 1 2528 269 65 40 chr1 191074595 191075793 -91117871 + L2 LINE L2 2100 3313 0 445 248 51 0 chr1 191075868 191075985 -91117679 - L2 LINE L2 -1 3312 3190 24 0 0 0 chr1 191076008 191076032 -91117632 + AT_rich Low_complexity Low_complexity 1 24 0 682 217 77 0 chr1 191076051 191076194 -91117470 + FRAM SINE Alu 1 152 -24 299 302 82 60 chr1 191076303 191076485 -91117179 - L2 LINE L2 -285 3028 2843 381 309 171 0 chr1 191076690 191076842 -91116822 - MER91B DNA MER1_type -12 178 1 21 0 0 0 chr1 191077885 191077906 -91115758 + AT_rich Low_complexity Low_complexity 1 21 0 251 278 97 14 chr1 191077933 191078005 -91115659 + MIR SINE MIR 20 97 -165 507 92 0 0 chr1 191078136 191078212 -91115452 - MER41A LTR ERV1 -81 473 398 1701 115 0 4 chr1 191078907 191079141 -91114523 + AluSq SINE Alu 11 243 -70 714 123 0 29 chr1 191079142 191079280 -91114384 + (GGAA)n Simple_repeat Simple_repeat 2 135 0 207 162 0 0 chr1 191079957 191079994 -91113670 + T-rich Low_complexity Low_complexity 1 37 0 280 257 134 29 chr1 191080073 191080244 -91113420 + MER112 DNA MER1_type 68 256 -4 11628 164 30 16 chr1 191080288 191083626 -91110038 + L1MA2 LINE L1 2877 6261 -43 363 193 34 17 chr1 191083649 191083825 -91109839 + (TA)n Simple_repeat Simple_repeat 2 180 0 254 119 15 45 chr1 191083831 191083898 -91109766 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 304 151 70 35 chr1 191083898 191083984 -91109680 + L1MCa LINE L1 1977 2065 -4361 224 89 89 0 chr1 191083990 191084069 -91109595 + (TA)n Simple_repeat Simple_repeat 1 86 0 283 55 41 41 chr1 191084241 191084314 -91109350 + (TTATA)n Simple_repeat Simple_repeat 2 74 0 246 62 0 0 chr1 191084314 191084346 -91109318 + (CA)n Simple_repeat Simple_repeat 2 33 0 1341 249 113 36 chr1 191084414 191084883 -91108781 + L2 LINE L2 2808 3312 -1 356 224 180 68 chr1 191085262 191085423 -91108241 - L2 LINE L2 -197 3116 2938 367 266 153 0 chr1 191085988 191086085 -91107579 - MIR SINE MIR 0 262 141 189 0 0 0 chr1 191086085 191086106 -91107558 + (TTA)n Simple_repeat Simple_repeat 3 23 0 367 266 153 0 chr1 191086106 191086132 -91107532 - MIR SINE MIR -121 141 120 183 338 104 13 chr1 191086196 191086273 -91107391 + L2 LINE L2 3143 3226 -46 299 298 85 50 chr1 191087216 191087357 -91106307 - MIR SINE MIR -64 198 53 426 300 142 28 chr1 191087730 191087990 -91105674 + L1ME4a LINE L1 5509 5738 -383 1328 197 102 13 chr1 191087990 191088305 -91105359 + MER2 DNA MER2_type 2 344 0 426 300 142 28 chr1 191088305 191088544 -91105120 + L1ME4a LINE L1 5738 6065 -56 714 306 122 3 chr1 191089414 191089798 -91103866 + L2 LINE L2 2761 3178 -135 314 271 167 48 chr1 191089845 191090096 -91103568 + L2 LINE L2 3033 3313 0 1976 136 0 7 chr1 191090444 191090738 -91102926 + AluSx SINE Alu 3 294 -18 2017 131 0 0 chr1 191090882 191091165 -91102499 + AluSx SINE Alu 13 295 -17 1706 191 7 7 chr1 191091900 191092209 -91101455 + AluJb SINE Alu 1 309 -3 598 211 150 14 chr1 191092261 191092474 -91101190 + MER112 DNA MER1_type 13 254 -6 458 337 66 0 chr1 191092615 191092781 -91100883 + L2 LINE L2 2897 3073 -240 302 316 197 7 chr1 191093085 191093237 -91100427 - L2 LINE L2 -4 3268 3088 744 197 0 0 chr1 191093367 191093489 -91100175 - FLAM_A SINE Alu -11 122 1 998 167 82 52 chr1 191093557 191093860 -91099804 + LTR8 LTR ERV1 1 256 -435 1198 187 62 91 chr1 191093900 191094350 -91099314 + LTR8A LTR ERV1 287 723 -4 405 361 122 11 chr1 191094769 191095137 -91098527 - L2 LINE L2 -802 2512 2104 293 282 92 23 chr1 191095937 191096068 -91097596 - MER5A DNA MER1_type -7 182 43 224 95 71 0 chr1 191096089 191096131 -91097533 + A-rich Low_complexity Low_complexity 2 46 0 619 299 128 23 chr1 191098829 191098856 -91094808 + L2 LINE L2 1890 1913 -1401 2496 157 42 11 chr1 191098856 191099307 -91094357 - MLT1C LTR MaLR 0 467 3 619 299 128 23 chr1 191099307 191099455 -91094209 + L2 LINE L2 1913 2044 -1270 597 179 232 6 chr1 191099455 191099623 -91094041 - MER3 DNA MER1_type -3 206 1 619 299 128 23 chr1 191099623 191099874 -91093790 + L2 LINE L2 2044 2362 -952 24 32 0 0 chr1 191100287 191100318 -91093346 + AT_rich Low_complexity Low_complexity 1 31 0 417 203 101 63 chr1 191100857 191101015 -91092649 + MER103 DNA DNA 3 166 0 185 341 89 57 chr1 191101376 191101499 -91092165 - L2 LINE L2 -9 3263 3137 224 255 104 66 chr1 191101565 191101671 -91091993 - MIR SINE MIR -151 111 2 1116 187 112 11 chr1 191101810 191102078 -91091586 + MER58D DNA MER1_type 90 384 -2 1374 158 0 83 chr1 191103028 191103282 -91090382 + AluJb SINE Alu 1 233 -79 331 250 67 19 chr1 191103780 191103884 -91089780 - MIR SINE MIR 0 262 154 275 307 34 29 chr1 191103986 191104191 -91089473 + L1ME LINE L1 5621 5826 -295 263 191 44 0 chr1 191104265 191104333 -91089331 + (TA)n Simple_repeat Simple_repeat 2 72 0 276 214 0 0 chr1 191104333 191104403 -91089261 - LTR66 LTR ERVL -166 444 375 186 43 0 0 chr1 191104735 191104758 -91088906 + (TA)n Simple_repeat Simple_repeat 2 24 0 436 294 170 5 chr1 191105092 191105286 -91088378 - MIR SINE MIR -5 257 32 235 162 0 40 chr1 191106523 191106597 -91087067 - L1ME4a LINE L1 -5 6116 6046 337 308 162 4 chr1 191106656 191106890 -91086774 - L1ME4a LINE L1 -222 5899 5629 23 0 0 0 chr1 191108516 191108539 -91085125 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 191108627 191108650 -91085014 + AT_rich Low_complexity Low_complexity 1 23 0 458 230 26 52 chr1 191108686 191108877 -91084787 + L1MC4a LINE L1 5746 5931 -1877 24 32 0 0 chr1 191108998 191109029 -91084635 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 191109096 191109122 -91084542 + AT_rich Low_complexity Low_complexity 1 26 0 1984 263 55 15 chr1 191110075 191110734 -91082930 + L1M4 LINE L1 3232 3916 -2230 228 324 261 22 chr1 191112330 191112913 -91080751 + L2 LINE L2 1366 2087 -1227 269 349 28 0 chr1 191113314 191113423 -91080241 + MIR SINE MIR 151 262 0 358 260 94 31 chr1 191114007 191114134 -91079530 + L2 LINE L2 3175 3309 -4 256 343 128 8 chr1 191115286 191115537 -91078127 - L2 LINE L2 -1226 2088 1808 2115 66 0 0 chr1 191115612 191115871 -91077793 + AluY SINE Alu 40 298 -13 419 190 25 0 chr1 191116749 191116828 -91076836 + MER58 DNA MER1_type 191 271 -70 22 0 0 0 chr1 191117309 191117331 -91076333 + AT_rich Low_complexity Low_complexity 1 22 0 4450 155 61 12 chr1 191117586 191117878 -91075786 + L1MB4 LINE L1 5026 5302 -878 2051 132 0 13 chr1 191117878 191118014 -91075650 + AluSq SINE Alu 1 137 -176 2304 85 3 7 chr1 191118014 191118320 -91075344 + AluSx SINE Alu 1 305 -7 2051 132 0 13 chr1 191118320 191118494 -91075170 + AluSq SINE Alu 137 307 -6 4450 155 61 12 chr1 191118494 191119279 -91074385 + L1MB4 LINE L1 5302 6151 -29 21 36 0 0 chr1 191119287 191119315 -91074349 + AT_rich Low_complexity Low_complexity 1 28 0 604 224 98 8 chr1 191119412 191119676 -91073988 + L1M4 LINE L1 3026 3313 -2833 340 127 127 0 chr1 191119751 191119814 -91073850 - MSTA LTR MaLR 0 428 358 5907 78 29 22 chr1 191119814 191120649 -91073015 - PABL_A-int LTR ERV1 -4174 841 1 5081 68 22 0 chr1 191120649 191121295 -91072369 - PABL_A LTR ERV1 0 660 1 1337 203 143 25 chr1 191121301 191121700 -91071964 + L1M4 LINE L1 4519 4964 -1182 2191 206 205 33 chr1 191121700 191122427 -91071237 + MER21B LTR ERV1 1 852 -11 2023 109 17 7 chr1 191122481 191122775 -91070889 + AluSx SINE Alu 1 297 -15 2153 131 0 0 chr1 191122779 191123077 -91070587 - AluSx SINE Alu -14 298 1 199 303 67 0 chr1 191123361 191123450 -91070214 + MIR SINE MIR 163 257 -5 1268 164 30 0 chr1 191123503 191123734 -91069930 - L1PA16 LINE L1 -9 6157 5920 221 119 24 0 chr1 191124987 191125029 -91068635 + (TG)n Simple_repeat Simple_repeat 1 43 0 302 256 0 13 chr1 191125431 191125447 -91068217 + GA-rich Low_complexity Low_complexity 4 19 -61 1862 134 0 8 chr1 191125447 191125715 -91067949 + AluSx SINE Alu 1 266 -46 302 256 0 13 chr1 191125715 191125776 -91067888 + GA-rich Low_complexity Low_complexity 19 80 0 211 146 24 0 chr1 191126200 191126241 -91067423 + (TA)n Simple_repeat Simple_repeat 1 42 0 1301 88 153 4 chr1 191127364 191127592 -91066072 + L1MA6 LINE L1 6032 6293 -7 228 308 154 0 chr1 191127668 191127759 -91065905 - L2 LINE L2 -1 3312 3208 1008 171 112 0 chr1 191127765 191127952 -91065712 - MER3 DNA MER1_type 0 209 2 1250 281 107 14 chr1 191128078 191128539 -91065125 - L2 LINE L2 -313 3000 2492 21 71 0 0 chr1 191128588 191128630 -91065034 + AT_rich Low_complexity Low_complexity 1 42 0 571 324 78 73 chr1 191128851 191129738 -91063926 + L1MEc LINE L1 202 1092 -5471 39995 70 12 4 chr1 191129867 191135973 -91057691 + L1PA5 LINE L1 4 6152 -2 22 0 0 0 chr1 191135990 191136012 -91057652 + AT_rich Low_complexity Low_complexity 1 22 0 757 300 84 47 chr1 191136032 191136566 -91057098 + L1MEc LINE L1 1146 1633 -4751 262 110 41 41 chr1 191136729 191136802 -91056862 + L1MEc LINE L1 2358 2430 -4133 31736 110 13 50 chr1 191136802 191143203 -91050461 + L1PA7 LINE L1 2 6152 -2 1299 245 88 0 chr1 191143253 191143731 -91049933 + L1MEc LINE L1 2446 2965 -3417 271 339 18 9 chr1 191145073 191145182 -91048482 + L2 LINE L2 2234 2343 -971 2815 133 14 5 chr1 191145190 191145618 -91048046 - L1P3 LINE L1 -5443 432 1 2562 233 109 34 chr1 191146212 191146979 -91046685 - MER21B LTR ERV1 -11 852 28 345 269 13 0 chr1 191147010 191147088 -91046576 - MER21B LTR ERV1 -773 90 12 397 276 142 47 chr1 191147196 191147540 -91046124 + L1ME4a LINE L1 5508 5884 -237 325 267 17 68 chr1 191147561 191147737 -91045927 + L1ME4a LINE L1 5949 6115 -6 23 33 0 0 chr1 191147776 191147806 -91045858 + AT_rich Low_complexity Low_complexity 1 30 0 1078 105 0 0 chr1 191148473 191148616 -91045048 + AluSq/x SINE Alu 1 143 -169 24 67 0 0 chr1 191148823 191148868 -91044796 + AT_rich Low_complexity Low_complexity 1 45 0 286 243 75 47 chr1 191149671 191149778 -91043886 + MIR SINE MIR 35 144 -64 257 296 93 19 chr1 191150231 191150339 -91043325 + MIR3 SINE MIR 89 204 -4 255 106 45 0 chr1 191152188 191152254 -91041410 + (TA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr1 191152603 191152623 -91041041 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 382 205 94 51 chr1 191152726 191152843 -91040821 + L2 LINE L2 3184 3305 -8 270 176 0 0 chr1 191153266 191153317 -91040347 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 289 326 20 10 chr1 191153468 191153566 -91040098 + L2 LINE L2 2121 2219 -1095 36 0 0 0 chr1 191153701 191153737 -91039927 + AT_rich Low_complexity Low_complexity 1 36 0 397 324 6 39 chr1 191153773 191153952 -91039712 + MIR SINE MIR 64 236 -26 182 263 0 0 chr1 191157576 191157614 -91036050 - MIR SINE MIR -138 70 33 6210 142 16 17 chr1 191157696 191157810 -91035854 - L1PB1 LINE L1 -15 6136 6023 222 62 0 0 chr1 191157810 191157842 -91035822 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1591 145 8 4 chr1 191157844 191158092 -91035572 - AluSx SINE Alu -25 287 39 6210 142 16 17 chr1 191158092 191159793 -91033871 - L1PB1 LINE L1 -129 6022 4316 3072 97 185 26 chr1 191159793 191160340 -91033324 - MER51A LTR ERV1 0 634 1 6210 142 16 17 chr1 191160340 191160515 -91033149 - L1PB1 LINE L1 -1835 4316 4142 693 114 73 0 chr1 191160519 191160642 -91033022 + L1MB8 LINE L1 5701 5832 -346 * 3015 191 62 8 chr1 191160627 191161240 -91032424 + L1MB3 LINE L1 1 646 -5738 2465 173 106 6 chr1 191161228 191161776 -91031888 + L1MB3 LINE L1 915 1517 -4867 * 5677 194 57 22 chr1 191161771 191163849 -91029815 + L1MB3 LINE L1 3962 6120 -299 1020 151 6 0 chr1 191163848 191164020 -91029644 + L1 LINE L1 3994 4166 -1980 * 1311 208 7 7 chr1 191164020 191164304 -91029360 + L1MB3 LINE L1 6124 6416 -3 1139 113 9 81 chr1 191164315 191164537 -91029127 + L1MB8 LINE L1 5814 6019 -159 448 215 132 0 chr1 191164723 191164844 -91028820 + MIR SINE MIR 110 246 -16 25 0 0 0 chr1 191164919 191164944 -91028720 + AT_rich Low_complexity Low_complexity 1 25 0 547 172 40 0 chr1 191165592 191165691 -91027973 - AluSg/x SINE Alu -19 290 188 3854 92 61 13 chr1 191166184 191166741 -91026923 - LTR8 LTR ERV1 -107 584 1 1757 147 72 9 chr1 191166741 191167074 -91026590 - HUERS-P1 LTR ERV1 0 6263 5910 * 10784 95 16 54 chr1 191167058 191168594 -91025070 - HUERS-P1 LTR ERV1 -4630 1633 167 3320 153 130 35 chr1 191168594 191169348 -91024316 - LTR1B LTR ERV1 0 826 1 10784 95 16 54 chr1 191169348 191169509 -91024155 - HUERS-P1 LTR ERV1 -6096 167 1 1132 118 65 6 chr1 191169509 191169678 -91023986 - LTR8 LTR ERV1 0 691 513 1845 135 6 58 chr1 191169810 191170121 -91023543 + AluSx SINE Alu 1 295 -17 202 293 72 60 chr1 191171934 191172101 -91021563 - L2 LINE L2 -125 3188 3020 227 191 15 29 chr1 191172148 191172216 -91021448 + (TA)n Simple_repeat Simple_repeat 2 68 0 591 285 141 4 chr1 191174065 191174360 -91019304 + L2 LINE L2 2680 3011 -302 3577 230 50 9 chr1 191174360 191175338 -91018326 - L1MCb LINE L1 -2043 4521 3504 2225 111 0 0 chr1 191175339 191175627 -91018037 + AluSc SINE Alu 1 288 -21 1317 152 5 0 chr1 191175826 191176030 -91017634 - MER2 DNA MER2_type -138 207 3 1945 254 82 20 chr1 191176035 191176288 -91017376 - L1MCb LINE L1 -3126 3438 3202 2060 138 0 16 chr1 191176288 191176593 -91017071 - AluSx SINE Alu -12 300 1 1945 254 82 20 chr1 191176593 191177084 -91016580 - L1MCb LINE L1 -3362 3202 2648 3814 208 124 16 chr1 191177094 191178571 -91015093 - L1MCb LINE L1 -4087 2477 759 2256 157 35 32 chr1 191178571 191179119 -91014545 - MLT2A2 LTR ERVL 0 554 1 1516 214 29 32 chr1 191179120 191179499 -91014165 - L1MCb LINE L1 -5283 762 385 431 234 18 0 chr1 191179482 191179593 -91014071 - L1MB3 LINE L1 -112 6071 5959 * 1955 231 43 4 chr1 191179598 191180087 -91013577 - L1MB3 LINE L1 -296 5888 5381 777 216 7 0 chr1 191180088 191180241 -91013423 - MER46A DNA MER2_type 0 236 83 1135 188 33 50 chr1 191180249 191180489 -91013175 - L1M3f LINE L1 -5091 237 2 1381 268 149 48 chr1 191180949 191181680 -91011984 - L2 LINE L2 -794 2520 1716 1108 241 70 28 chr1 191181681 191181967 -91011697 + MER69 DNA AcHobo 2 299 -927 25 31 0 0 chr1 191182011 191182043 -91011621 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 191183871 191183901 -91009763 + AT_rich Low_complexity Low_complexity 1 30 0 1870 133 145 54 chr1 191185631 191186023 -91007641 + MSTC LTR MaLR 1 428 0 614 239 102 36 chr1 191186152 191186601 -91007063 - L1MEd LINE L1 -863 1627 1049 853 140 35 40 chr1 191186612 191186809 -91006855 - MER6 DNA MER2_type 0 865 -64 487 162 0 48 chr1 191186812 191186917 -91006747 - L1MEd LINE L1 -5083 1036 937 363 197 0 0 chr1 191187254 191187315 -91006349 - Charlie5 DNA MER1_type -2549 63 3 358 38 19 19 chr1 191187373 191187426 -91006238 - MADE1 DNA Mariner -26 54 2 633 197 0 0 chr1 191187429 191187551 -91006113 - L1ME LINE L1 -515 5647 5526 290 288 98 61 chr1 191187594 191187757 -91005907 - MER21B LTR ERV1 -371 492 324 353 237 73 17 chr1 191187829 191188006 -91005658 - L1MEd LINE L1 -5233 886 700 30 59 0 0 chr1 191188014 191188065 -91005599 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr1 191188217 191188240 -91005424 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr1 191189081 191189105 -91004559 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr1 191189169 191189193 -91004471 + AT_rich Low_complexity Low_complexity 1 24 0 246 274 16 0 chr1 191190066 191190128 -91003536 + MIR SINE MIR 56 118 -144 365 281 140 11 chr1 191190929 191191107 -91002557 - MIR SINE MIR -12 250 50 1321 113 192 0 chr1 191191375 191191615 -91002049 - AluSx SINE Alu -18 294 9 186 226 32 48 chr1 191191615 191191677 -91001987 + L3 LINE CR1 949 1009 -568 1626 163 16 4 chr1 191191685 191191942 -91001722 + AluJo SINE Alu 1 260 -52 21 0 0 0 chr1 191191953 191191974 -91001690 + AT_rich Low_complexity Low_complexity 1 21 0 2369 55 14 0 chr1 191192182 191192471 -91001193 + AluY SINE Alu 1 293 -18 23 33 0 0 chr1 191193015 191193045 -91000619 + AT_rich Low_complexity Low_complexity 1 30 0 34 0 0 0 chr1 191193111 191193145 -91000519 + AT_rich Low_complexity Low_complexity 1 34 0 487 277 39 39 chr1 191195301 191195456 -90998208 + MIR SINE MIR 23 177 -85 2247 71 24 0 chr1 191195702 191195999 -90997665 - L1PA8 LINE L1 -4 6168 5865 262 304 59 10 chr1 191196388 191196490 -90997174 + MIR SINE MIR 32 138 -124 196 268 72 21 chr1 191198441 191198538 -90995126 - MIR SINE MIR -4 258 157 919 238 57 0 chr1 191198555 191198803 -90994861 + MIR SINE MIR 1 262 0 298 246 70 0 chr1 191199800 191199914 -90993750 + L1ME4a LINE L1 5969 6090 -31 880 149 0 15 chr1 191200116 191200250 -90993414 + FLAM_C SINE Alu 1 132 -1 311 224 199 61 chr1 191200301 191200497 -90993167 + L1ME4a LINE L1 5846 6068 -53 1570 185 50 14 chr1 191200524 191200639 -90993025 + AluJb SINE Alu 2 111 -201 414 0 0 0 chr1 191200639 191200685 -90992979 + (CA)n Simple_repeat Simple_repeat 1 46 0 1570 185 50 14 chr1 191200685 191200850 -90992814 + AluJb SINE Alu 111 292 -20 216 0 0 0 chr1 191200851 191200875 -90992789 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr1 191200892 191200927 -90992737 + AT_rich Low_complexity Low_complexity 1 35 0 194 278 22 44 chr1 191201622 191201712 -90991952 + MIR SINE MIR 117 204 -58 1971 131 13 35 chr1 191202408 191202721 -90990943 - AluSx SINE Alu -6 306 1 408 283 117 0 chr1 191202741 191202886 -90990778 + MIR SINE MIR 68 229 -33 183 42 0 0 chr1 191202910 191202934 -90990730 + (ATG)n Simple_repeat Simple_repeat 3 26 0 269 250 311 0 chr1 191203065 191203197 -90990467 - MIR SINE MIR 0 262 90 2043 115 3 7 chr1 191205612 191205922 -90987742 + AluSx SINE Alu 1 309 0 188 324 56 28 chr1 191205979 191206050 -90987614 - L2 LINE L2 0 3272 3200 231 36 0 0 chr1 191206170 191206198 -90987466 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2043 110 45 7 chr1 191207082 191207372 -90986292 - AluSx SINE Alu -11 301 1 1742 146 0 71 chr1 191207515 191207851 -90985813 - AluJb SINE Alu 0 312 1 189 186 186 0 chr1 191207908 191207951 -90985713 - MER5B DNA MER1_type -3 175 125 980 168 19 19 chr1 191207956 191208117 -90985547 + FRAM SINE Alu 1 158 -18 217 246 29 29 chr1 191208118 191208187 -90985477 - MER5B DNA MER1_type -109 69 1 233 319 193 22 chr1 191208608 191208743 -90984921 + MIR SINE MIR 56 213 -49 2111 88 49 3 chr1 191209491 191209775 -90983889 - AluSq SINE Alu -16 297 1 551 290 79 19 chr1 191210311 191210525 -90983139 - MIR SINE MIR -1 261 35 2336 85 0 25 chr1 191211092 191211409 -90982255 + AluSq SINE Alu 1 309 -4 1915 157 7 3 chr1 191211433 191211726 -90981938 + AluSx SINE Alu 1 294 -18 301 312 119 61 chr1 191214675 191214986 -90978678 + L1M2 LINE L1 594 922 -5927 825 207 164 0 chr1 191216356 191216564 -90977100 + Charlie1 DNA MER1_type 1 242 -2519 329 173 142 47 chr1 191216547 191216674 -90976990 + Charlie1 DNA MER1_type 2622 2760 -1 * 1690 112 84 11 chr1 191216867 191217154 -90976510 + AluSx SINE Alu 1 308 -4 1899 199 115 19 chr1 191217327 191217916 -90975748 + MLT1E2 LTR MaLR 1 626 0 4627 143 59 3 chr1 191217933 191218850 -90974814 - L1MB5 LINE L1 0 6174 5207 928 277 71 61 chr1 191218952 191219384 -90974280 - L1MC4a LINE L1 -348 5818 5392 886 167 26 86 chr1 191219384 191219617 -90974047 + MER20 DNA MER1_type 1 219 0 928 277 71 61 chr1 191219617 191219637 -90974027 - L1MC4a LINE L1 -774 5392 5374 2287 77 20 3 chr1 191219637 191219934 -90973730 + AluSc SINE Alu 1 302 -7 928 277 71 61 chr1 191219934 191220118 -90973546 - L1MC4a LINE L1 -792 5374 5263 321 333 23 8 chr1 191220200 191220332 -90973332 + L1M4 LINE L1 4465 4598 -1548 205 323 32 11 chr1 191220415 191220508 -90973156 - MIR3 SINE MIR -14 194 100 226 264 38 85 chr1 191220869 191220975 -90972689 - MIR SINE MIR -78 184 84 215 324 147 0 chr1 191220974 191221076 -90972588 - L2 LINE L2 0 3272 3156 * 1389 284 73 27 chr1 191221914 191222633 -90971031 + L2 LINE L2 2555 3312 -1 1792 38 5 0 chr1 191223081 191223293 -90970371 + AluY SINE Alu 84 296 -15 372 322 75 29 chr1 191223493 191223667 -90969997 + MIR3 SINE MIR 27 208 0 2443 55 3 0 chr1 191223891 191224182 -90969482 + AluSc SINE Alu 2 293 -16 547 256 66 67 chr1 191226026 191226281 -90967383 + MIR SINE MIR 10 262 0 186 289 0 0 chr1 191226305 191226357 -90967307 + L2 LINE L2 3246 3297 -16 21 36 0 0 chr1 191226518 191226546 -90967118 + AT_rich Low_complexity Low_complexity 1 28 0 183 300 96 60 chr1 191226580 191226665 -90966999 - L2 LINE L2 -1713 1601 1521 3159 145 70 2 chr1 191226665 191227183 -90966481 + MER41C LTR ERV1 1 553 -1 183 300 96 60 chr1 191227183 191227430 -90966234 - L2 LINE L2 -1793 1521 1257 1685 154 70 20 chr1 191227782 191228139 -90965525 - THE1C LTR MaLR 0 375 1 2305 93 7 3 chr1 191228253 191228555 -90965109 - AluSq SINE Alu -10 303 1 1106 286 75 47 chr1 191228649 191229425 -90964239 + L2 LINE L2 2497 3294 -19 16902 67 8 1 chr1 191229455 191231807 -90961857 + L1P LINE L1 2584 4951 -1195 314 190 170 50 chr1 191231849 191231949 -90961715 + MIR3 SINE MIR 76 187 -21 298 198 167 52 chr1 191231954 191232050 -90961614 + MIR3 SINE MIR 81 187 -21 6947 60 6 1 chr1 191232133 191233362 -90960302 + L1PA6 LINE L1 4921 6153 -1 206 130 22 43 chr1 191233468 191233514 -90960150 + GA-rich Low_complexity Low_complexity 1 45 0 13388 99 22 1 chr1 191233865 191236638 -90957026 + L1PA8 LINE L1 3348 6170 -2 496 95 125 1 chr1 191238789 191238902 -90954762 + L1MB3 LINE L1 6049 6168 -6 416 266 36 58 chr1 191241322 191241461 -90952203 + MIR3 SINE MIR 19 154 -54 789 237 17 11 chr1 191241584 191241761 -90951903 - MER45A DNA AcHobo 0 178 1 290 238 25 12 chr1 191241989 191242069 -90951595 + MLT1F LTR MaLR 18 98 -444 1262 90 18 27 chr1 191242112 191242323 -90951341 - L1P LINE L1 -3167 2979 2769 441 159 88 0 chr1 191242323 191242436 -90951228 - L1MA7 LINE L1 -19 6272 6150 886 199 19 0 chr1 191243685 191243846 -90949818 - FRAM SINE Alu -9 167 4 472 223 91 34 chr1 191244059 191244234 -90949430 + MIR SINE MIR 75 259 -3 305 254 111 32 chr1 191245016 191245142 -90948522 + L2 LINE L2 3178 3313 0 192 200 0 0 chr1 191245633 191245678 -90947986 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 26 88 0 0 chr1 191246208 191246276 -90947388 + AT_rich Low_complexity Low_complexity 1 68 0 275 333 173 19 chr1 191246342 191246504 -90947160 + MIR3 SINE MIR 17 203 -5 1296 154 5 5 chr1 191247125 191247333 -90946331 + MER58A DNA MER1_type 2 209 -15 387 262 288 5 chr1 191247855 191248046 -90945618 - MIR SINE MIR -1 261 17 2858 221 74 17 chr1 191249981 191250693 -90942971 + L1MDa LINE L1 14 766 -5774 1361 271 49 22 chr1 191250707 191250791 -90942873 + L1M4 LINE L1 3133 3213 -2933 2354 76 13 13 chr1 191250791 191251094 -90942570 - AluSc SINE Alu -6 303 1 1361 271 49 22 chr1 191251094 191251600 -90942064 + L1M4 LINE L1 3213 3739 -2407 26 82 0 0 chr1 191251690 191251751 -90941913 + AT_rich Low_complexity Low_complexity 1 61 0 632 256 97 20 chr1 191252677 191252872 -90940792 + MIR SINE MIR 32 241 -21 190 280 20 0 chr1 191253466 191253516 -90940148 + L2 LINE L2 3263 3313 0 328 258 0 0 chr1 191253929 191253991 -90939673 + MER91B DNA MER1_type 2 63 -127 684 134 126 0 chr1 191254390 191254509 -90939155 + AluJb SINE Alu 1 134 -178 190 333 13 13 chr1 191254620 191254695 -90938969 + L2 LINE L2 3197 3271 -1 21 36 0 0 chr1 191255577 191255605 -90938059 + AT_rich Low_complexity Low_complexity 1 28 0 199 329 178 14 chr1 191255689 191255835 -90937829 - L3b LINE CR1 -136 1447 1278 46 54 0 0 chr1 191256016 191256090 -90937574 + AT_rich Low_complexity Low_complexity 1 74 0 349 35 0 86 chr1 191256272 191256330 -90937334 + MADE1 DNA Mariner 1 53 -27 209 306 24 105 chr1 191256344 191256468 -90937196 + MER5A DNA MER1_type 55 168 -21 23 0 0 0 chr1 191256597 191256620 -90937044 + AT_rich Low_complexity Low_complexity 1 23 0 199 313 133 0 chr1 191259245 191259328 -90934336 - MIR SINE MIR -13 249 156 284 226 0 0 chr1 191259331 191259384 -90934280 - L2 LINE L2 0 3313 3261 208 310 248 0 chr1 191259366 191259495 -90934169 - MIR SINE MIR -93 169 9 * 357 226 13 0 chr1 191259513 191259607 -90934057 - L1MA8 LINE L1 0 6291 6205 201 261 0 0 chr1 191260324 191260370 -90933294 - MIR SINE MIR -57 205 160 7566 174 23 27 chr1 191261007 191262281 -90931383 + L1PA16 LINE L1 3623 4886 -1280 222 37 0 0 chr1 191262281 191262308 -90931356 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7566 174 23 27 chr1 191262308 191263040 -90930624 + L1PA16 LINE L1 4886 5619 -547 2014 168 92 35 chr1 191263040 191263499 -90930165 + LTR2B LTR ERV1 1 485 -5 3522 108 13 27 chr1 191263499 191263561 -90930103 + L1PA16 LINE L1 5611 5672 -494 2376 112 0 0 chr1 191263561 191263873 -90929791 + AluSx SINE Alu 1 312 0 3522 108 13 27 chr1 191263873 191264365 -90929299 + L1PA16 LINE L1 5672 6157 -9 575 167 49 42 chr1 191264419 191264563 -90929101 + MER96B DNA MER1_type? 164 308 -109 1608 129 47 0 chr1 191264576 191264831 -90928833 - L1PB3 LINE L1 -9 6145 5879 180 234 0 0 chr1 191265318 191265365 -90928299 + (CTA)n Simple_repeat Simple_repeat 1 47 0 181 375 0 0 chr1 191265932 191265988 -90927676 + L2 LINE L2 3217 3272 0 184 357 29 29 chr1 191266025 191266095 -90927569 + L2 LINE L2 3004 3073 -199 490 259 18 65 chr1 191266195 191266365 -90927299 + L2 LINE L2 3152 3313 0 5235 151 36 8 chr1 191266581 191267759 -90925905 + L1MA8 LINE L1 5059 6265 -26 2071 148 19 55 chr1 191267801 191268220 -90925444 + L1MD1 LINE L1 5833 6236 -6 22 0 0 0 chr1 191268222 191268244 -90925420 + AT_rich Low_complexity Low_complexity 1 22 0 378 231 8 82 chr1 191272390 191272524 -90921140 + MER5C DNA MER1_type 1 124 -200 446 290 140 19 chr1 191272873 191273087 -90920577 - MIR SINE MIR 0 262 23 288 363 22 11 chr1 191274256 191274347 -90919317 + L2 LINE L2 3156 3247 -25 1609 159 55 3 chr1 191274442 191274750 -90918914 + MER33 DNA MER1_type 1 324 0 252 0 0 0 chr1 191275356 191275384 -90918280 + (CA)n Simple_repeat Simple_repeat 2 29 0 6460 89 8 4 chr1 191275776 191276023 -90917641 + L1PA12 LINE L1 4761 5006 -1162 1881 107 3 107 chr1 191276023 191276370 -90917294 + AluSx SINE Alu 1 311 -1 6460 89 8 4 chr1 191276370 191277541 -90916123 + L1PA12 LINE L1 5006 6167 -1 2241 110 0 3 chr1 191277761 191278069 -90915595 + AluSx SINE Alu 1 307 -5 226 283 116 36 chr1 191278605 191278743 -90914921 - MIR SINE MIR -67 195 47 1688 48 0 35 chr1 191279304 191279535 -90914129 - L1PA5 LINE L1 0 6154 5932 1956 137 0 4 chr1 191280342 191280620 -90913044 + AluJb SINE Alu 1 277 -35 1586 132 11 31 chr1 191282514 191282602 -90911062 + L1P4 LINE L1 5351 5439 -724 2301 61 0 45 chr1 191282602 191282914 -90910750 + AluY SINE Alu 1 298 -13 1586 132 11 31 chr1 191282914 191283112 -90910552 + L1P4 LINE L1 5439 5631 -532 195 329 66 13 chr1 191283155 191283231 -90910433 + MIR SINE MIR 22 101 -107 2045 245 53 11 chr1 191283403 191284011 -90909653 - L1MC4a LINE L1 -1820 5988 5356 308 306 136 0 chr1 191284011 191284158 -90909506 + MIR SINE MIR 96 262 0 228 269 77 48 chr1 191284842 191284946 -90908718 + MIR SINE MIR 107 213 -49 222 235 20 0 chr1 191285337 191285388 -90908276 - L2 LINE L2 -4 3268 3217 22 0 0 0 chr1 191285595 191285617 -90908047 + AT_rich Low_complexity Low_complexity 1 22 0 319 338 128 7 chr1 191286104 191286252 -90907412 - L2 LINE L2 -3 3269 3104 345 255 108 20 chr1 191286349 191286451 -90907213 + MER81 DNA DNA 2 112 -2 278 119 40 59 chr1 191291067 191291168 -90902496 + CT-rich Low_complexity Low_complexity 5 103 0 921 242 52 15 chr1 191291212 191291481 -90902183 - L1ME1 LINE L1 -8 6158 5880 * 5019 252 75 56 chr1 191291468 191293789 -90899875 - L1MEc LINE L1 -3965 2431 66 535 294 37 94 chr1 191294108 191294640 -90899024 + L2 LINE L2 2778 3263 -9 559 317 99 28 chr1 191294690 191294974 -90898690 + MER102b DNA MER1_type 38 341 0 182 362 0 14 chr1 191295555 191295624 -90898040 + L2 LINE L2 2965 3032 -240 316 285 76 57 chr1 191295749 191295907 -90897757 + MIR SINE MIR 11 171 -91 1602 175 31 45 chr1 191296153 191296418 -90897246 - MLT1A1 LTR MaLR -11 354 94 1349 0 0 0 chr1 191296418 191296568 -90897096 + L1PA2 LINE L1 6002 6151 -4 1602 175 31 45 chr1 191296568 191296657 -90897007 - MLT1A1 LTR MaLR -271 94 5 199 338 62 0 chr1 191296892 191296972 -90896692 - L2 LINE L2 -29 3243 3159 557 274 212 9 chr1 191299963 191300175 -90893489 - MIR SINE MIR -1 261 7 590 332 106 0 chr1 191300466 191300692 -90892972 - MIR SINE MIR -7 255 6 182 250 0 45 chr1 191300743 191300787 -90892877 - L2 LINE L2 -18 3254 3213 296 241 0 0 chr1 191300810 191300864 -90892800 + MER58A DNA MER1_type 19 72 -35 787 150 16 0 chr1 191300957 191301084 -90892580 + MER58A DNA MER1_type 96 224 0 261 180 33 16 chr1 191301108 191301169 -90892495 - MIR SINE MIR -108 154 93 1146 264 92 94 chr1 191301833 191302122 -90891542 - L2 LINE L2 -207 3106 2818 2281 101 0 7 chr1 191302122 191302418 -90891246 - AluSx SINE Alu -13 299 6 1146 264 92 94 chr1 191302418 191302847 -90890817 - L2 LINE L2 -495 2818 2349 335 332 75 27 chr1 191302848 191303035 -90890629 - L2 LINE L2 -31 3241 3046 1303 195 98 49 chr1 191303074 191303402 -90890262 - MER2 DNA MER2_type -1 344 1 550 326 17 11 chr1 191303410 191303588 -90890076 + MER5A DNA MER1_type 7 185 -4 489 247 133 18 chr1 191303822 191303988 -90889676 - MIR SINE MIR -75 187 3 228 330 54 18 chr1 191304024 191304136 -90889528 - L2 LINE L2 -1 3312 3197 895 333 73 30 chr1 191304307 191304963 -90888701 - L2 LINE L2 -213 3059 2370 2483 170 65 17 chr1 191304963 191305439 -90888225 + MLT1D LTR MaLR 1 499 -6 428 326 22 50 chr1 191305571 191305752 -90887912 - MIR3 SINE MIR -18 190 15 254 290 80 51 chr1 191306373 191306511 -90887153 - L3b LINE CR1 -20 1563 1422 1653 160 13 70 chr1 191306552 191306736 -90886928 - AluJo SINE Alu -18 294 134 426 39 0 0 chr1 191306736 191306788 -90886876 + (TA)n Simple_repeat Simple_repeat 2 53 0 1653 160 13 70 chr1 191306788 191306915 -90886749 - AluJo SINE Alu -178 134 1 882 341 162 42 chr1 191307906 191309539 -90884125 + L2 LINE L2 1422 3250 -22 1932 140 46 0 chr1 191309542 191309846 -90883818 - AluSx SINE Alu 0 312 1 23 33 0 0 chr1 191309855 191309885 -90883779 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr1 191309894 191309919 -90883745 + AT_rich Low_complexity Low_complexity 1 25 0 380 288 9 18 chr1 191310030 191310141 -90883523 - MIR SINE MIR 0 262 153 318 339 159 9 chr1 191310300 191310633 -90883031 - L2 LINE L2 -1233 2081 1699 486 329 0 13 chr1 191311100 191311258 -90882406 + L2 LINE L2 3117 3272 0 1086 169 29 0 chr1 191311311 191311483 -90882181 + MER45A DNA AcHobo 1 177 -1 185 272 108 95 chr1 191312146 191312202 -90881462 - L2 LINE L2 -1239 2075 2021 277 296 37 0 chr1 191312202 191312283 -90881381 - MIR SINE MIR -126 136 53 185 272 108 95 chr1 191312283 191312304 -90881360 - L2 LINE L2 -1293 2021 1916 564 329 49 8 chr1 191312593 191312839 -90880825 + MIR SINE MIR 5 260 -2 335 295 0 116 chr1 191313021 191313194 -90880470 + L3 LINE CR1 1424 1576 -1 21 0 0 0 chr1 191313221 191313242 -90880422 + AT_rich Low_complexity Low_complexity 1 21 0 596 243 66 22 chr1 191316238 191316419 -90877245 + MIR SINE MIR 2 190 -72 2214 122 10 3 chr1 191316456 191316767 -90876897 + AluSq SINE Alu 1 313 0 203 169 169 15 chr1 191317369 191317434 -90876230 + MER5A DNA MER1_type 1 75 -114 292 232 232 9 chr1 191319867 191319979 -90873685 - MER20B DNA MER1_type -646 137 1 1149 267 118 16 chr1 191320008 191320518 -90873146 + MER20B DNA MER1_type 159 758 -25 277 332 148 36 chr1 191321992 191322215 -90871449 + L2 LINE L2 2830 3077 -195 229 253 179 39 chr1 191322498 191322632 -90871032 + MER5B DNA MER1_type 25 188 -1 262 260 135 21 chr1 191325764 191325860 -90867804 + MIR3 SINE MIR 62 168 -40 242 228 53 0 chr1 191326424 191326481 -90867183 - L2 LINE L2 0 3313 3254 454 226 61 0 chr1 191327885 191328000 -90865664 + L2 LINE L2 3192 3313 0 191 302 19 0 chr1 191328346 191328399 -90865265 + L2 LINE L2 3213 3266 -6 1246 234 42 27 chr1 191329339 191329673 -90863991 - MER2 DNA MER2_type -4 340 2 212 191 24 0 chr1 191330327 191330369 -90863295 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 344 351 86 7 chr1 191330492 191330643 -90863021 - MIR3 SINE MIR -29 179 17 679 249 40 15 chr1 191330835 191331036 -90862628 + MIR SINE MIR 1 206 -56 225 162 76 152 chr1 191331326 191331431 -90862233 + LTR11 LTR ERV 348 444 -240 434 234 36 84 chr1 191331628 191331795 -90861869 + MIR SINE MIR 64 222 -40 1762 85 0 0 chr1 191331797 191332009 -90861655 - AluSc SINE Alu -21 288 77 219 69 0 0 chr1 191332454 191332483 -90861181 + (TC)n Simple_repeat Simple_repeat 1 29 0 378 0 0 0 chr1 191332483 191332525 -90861139 + (TG)n Simple_repeat Simple_repeat 1 42 0 349 302 62 0 chr1 191332883 191332979 -90860685 + MIR SINE MIR 48 149 -113 4667 24 0 0 chr1 191332989 191333702 -90859962 - L1P2 LINE L1 -364 5791 5079 318 50 0 0 chr1 191334586 191334626 -90859038 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 221 180 20 0 chr1 191334652 191334702 -90858962 + (TG)n Simple_repeat Simple_repeat 1 51 0 2185 111 0 0 chr1 191335210 191335498 -90858166 + AluSx SINE Alu 1 288 -24 568 284 98 15 chr1 191336493 191336828 -90856836 + L1ME4a LINE L1 5558 5920 -201 262 212 139 66 chr1 191336879 191337016 -90856648 + MIR SINE MIR 116 262 0 3184 142 4 30 chr1 191337347 191337884 -90855780 - L1MB3 LINE L1 -2 6181 5659 304 215 99 77 chr1 191338200 191338397 -90855267 - MIR SINE MIR -49 213 19 222 288 0 30 chr1 191338533 191338599 -90855065 + L2 LINE L2 3204 3267 -5 526 348 70 14 chr1 191339007 191339294 -90854370 + L2 LINE L2 2954 3256 -16 1855 124 72 4 chr1 191339690 191339994 -90853670 + AluSx SINE Alu 1 322 0 409 324 0 0 chr1 191340024 191340129 -90853535 - MIR SINE MIR -59 149 45 302 273 86 50 chr1 191340422 191340561 -90853103 - MIR SINE MIR -29 233 90 359 230 69 0 chr1 191343274 191343361 -90850303 + MIR SINE MIR 34 126 -136 242 306 36 36 chr1 191343789 191343900 -90849764 + L3 LINE CR1 1466 1576 -1 290 204 136 0 chr1 191344475 191344563 -90849101 + MER117 DNA MER1_type 41 140 -57 533 266 39 100 chr1 191345511 191345770 -90847894 + MIR SINE MIR 15 257 -5 326 380 33 0 chr1 191345860 191346010 -90847654 + MIR3 SINE MIR 33 187 -21 368 284 137 0 chr1 191346835 191346937 -90846727 - MIR3 SINE MIR -6 202 87 377 299 143 57 chr1 191347024 191347395 -90846269 + L2 LINE L2 2869 3271 -1 211 378 0 14 chr1 191347395 191347469 -90846195 - MIR3 SINE MIR -121 87 15 1081 212 122 0 chr1 191347860 191348105 -90845559 + ORSL DNA AcHobo 1 275 0 227 75 100 0 chr1 191348612 191348652 -90845012 - L2 LINE L2 -1 3312 3269 2174 105 0 23 chr1 191349096 191349400 -90844264 + AluSg SINE Alu 1 297 -13 251 345 135 23 chr1 191349430 191349559 -90844105 - MIR3 SINE MIR -46 162 20 330 26 0 0 chr1 191349971 191350010 -90843654 + (TG)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chr1 191350125 191350156 -90843508 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr1 191350269 191350296 -90843368 + (TG)n Simple_repeat Simple_repeat 2 28 0 315 0 0 0 chr1 191350604 191350639 -90843025 + (TG)n Simple_repeat Simple_repeat 2 36 0 495 291 234 4 chr1 191351136 191351363 -90842301 + Charlie2 DNA MER1_type 47 325 -2537 2753 225 90 22 chr1 191351364 191352306 -90841358 + Charlie2 DNA MER1_type 1855 2860 -2 181 143 29 29 chr1 191353026 191353061 -90840603 - MIR SINE MIR -83 125 91 2025 122 41 0 chr1 191353648 191353943 -90839721 + AluSx SINE Alu 6 312 0 202 315 181 37 chr1 191354171 191354574 -90839090 + L2 LINE L2 1701 2161 -1153 244 313 125 0 chr1 191354739 191354835 -90838829 + L2 LINE L2 3161 3268 -4 766 318 24 47 chr1 191354981 191355475 -90838189 - L2 LINE L2 -81 3232 2743 1811 128 8 4 chr1 191355475 191355732 -90837932 + AluSx SINE Alu 1 258 -54 1471 195 31 0 chr1 191355890 191356147 -90837517 - AluJo SINE Alu -32 280 16 1995 146 3 0 chr1 191357070 191357371 -90836293 - AluSx SINE Alu -10 302 1 540 268 32 6 chr1 191358524 191358681 -90834983 - MIR SINE MIR 0 262 102 234 353 78 18 chr1 191358915 191359082 -90834582 + MIR SINE MIR 12 188 -74 931 252 58 0 chr1 191359935 191360177 -90833487 + MIR SINE MIR 7 262 0 645 210 139 67 chr1 191360569 191360675 -90832989 + MIR SINE MIR 8 105 -157 2197 127 44 41 chr1 191360675 191361038 -90832626 + THE1B LTR MaLR 1 364 0 645 210 139 67 chr1 191361038 191361169 -90832495 + MIR SINE MIR 105 262 0 1691 163 31 37 chr1 191361303 191361597 -90832067 - AluJb SINE Alu -20 292 1 283 291 0 20 chr1 191361717 191361819 -90831845 + L1MA8 LINE L1 62 1048 -6050 3173 236 58 76 chr1 191362788 191363656 -90830008 + L1MA8 LINE L1 1539 2083 -5084 2004 133 7 7 chr1 191363656 191363956 -90829708 + AluSx SINE Alu 1 300 -12 3173 236 58 76 chr1 191363956 191364849 -90828815 + L1MA8 LINE L1 2083 2990 -4177 * 7653 140 39 74 chr1 191364834 191366189 -90827475 + L1MA8 LINE L1 4768 6169 -1143 764 23 0 0 chr1 191366189 191366276 -90827388 + AluY SINE Alu 216 302 -9 7653 140 39 74 chr1 191366276 191366507 -90827157 + L1MA8 LINE L1 6169 6406 -906 228 111 0 0 chr1 191366507 191366543 -90827121 + (CA)n Simple_repeat Simple_repeat 1 36 0 7653 140 39 74 chr1 191366543 191366720 -90826944 + L1MA8 LINE L1 6406 6588 -724 2217 98 0 26 chr1 191366720 191367026 -90826638 + AluY SINE Alu 1 298 -13 7653 140 39 74 chr1 191367026 191367357 -90826307 + L1MA8 LINE L1 6588 6838 -474 2353 86 3 13 chr1 191367357 191367670 -90825994 + AluSp SINE Alu 1 310 -3 7653 140 39 74 chr1 191367670 191367956 -90825708 + L1MA8 LINE L1 6838 7132 -180 342 244 13 0 chr1 191367956 191368034 -90825630 + Tigger5 DNA MER2_type 1 79 -2244 448 171 0 0 chr1 191368036 191368106 -90825558 - Tigger5 DNA MER2_type -12 2311 2242 * 470 176 0 35 chr1 191368096 191368181 -90825483 + Tigger5 DNA MER2_type 2242 2323 0 1015 117 18 12 chr1 191368181 191368352 -90825312 + L1MA8 LINE L1 6110 6281 -10 183 80 0 0 chr1 191368363 191368388 -90825276 + (CATA)n Simple_repeat Simple_repeat 1 25 0 214 299 97 56 chr1 191368576 191368720 -90824944 + L2 LINE L2 3154 3303 -10 7363 26 1 2 chr1 191369025 191369835 -90823829 + L1PA5 LINE L1 5337 6145 -9 241 242 111 40 chr1 191370179 191370278 -90823386 - L1ME4a LINE L1 0 6121 6016 216 269 0 0 chr1 191370402 191370469 -90823195 + (TA)n Simple_repeat Simple_repeat 2 68 0 423 301 68 12 chr1 191370929 191371092 -90822572 - L2 LINE L2 0 3272 3101 288 265 13 151 chr1 191371511 191371749 -90821915 - MIR SINE MIR -11 251 47 1085 127 0 0 chr1 191372052 191372209 -90821455 - AluSg/x SINE Alu -1 311 155 1965 155 76 33 chr1 191372672 191373047 -90820617 + L1M2 LINE L1 4979 5382 -893 1967 164 7 0 chr1 191373047 191373352 -90820312 + AluSx SINE Alu 1 307 -5 1965 155 76 33 chr1 191373352 191373510 -90820154 + L1M2 LINE L1 5382 5532 -743 510 125 0 0 chr1 191373945 191374025 -90819639 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1909 149 7 7 chr1 191374025 191374320 -90819344 - AluJo SINE Alu -17 295 1 2176 121 14 0 chr1 191374928 191375225 -90818439 + AluSq SINE Alu 1 301 -12 22 56 0 0 chr1 191375365 191375401 -90818263 + AT_rich Low_complexity Low_complexity 1 36 0 690 304 53 33 chr1 191376257 191376707 -90816957 - L1ME4a LINE L1 -171 5950 5492 1070 180 59 70 chr1 191376942 191377198 -90816466 + L1MC1 LINE L1 6 258 -6168 4324 150 151 14 chr1 191377199 191377874 -90815790 + L1MC1 LINE L1 792 1637 -4789 2588 169 17 30 chr1 191377874 191378337 -90815327 - MSTB2 LTR MaLR 0 457 1 4324 150 151 14 chr1 191378337 191378612 -90815052 + L1MC1 LINE L1 1637 1873 -4553 897 223 15 0 chr1 191378592 191378789 -90814875 + L1MC1 LINE L1 4736 4935 -1491 * 1276 205 189 0 chr1 191378790 191379097 -90814567 + MLT1A1 LTR MaLR 1 365 0 6489 176 27 14 chr1 191379099 191380733 -90812931 + L1MC1 LINE L1 4955 6612 -1 312 48 0 0 chr1 191381463 191381505 -90812159 + (TG)n Simple_repeat Simple_repeat 1 42 0 1998 160 0 0 chr1 191381508 191381820 -90811844 - AluJb SINE Alu 0 312 1 262 232 0 0 chr1 191381849 191381905 -90811759 + MIR SINE MIR 80 135 -127 1360 265 90 32 chr1 191381938 191382730 -90810934 + L1M4 LINE L1 3788 4625 -1521 412 333 31 16 chr1 191382735 191382864 -90810800 - L2 LINE L2 -2 3311 3181 282 323 16 47 chr1 191382920 191383047 -90810617 - MIR SINE MIR -120 142 20 184 300 14 71 chr1 191384090 191384160 -90809504 + MIR SINE MIR 5 70 -192 289 119 0 85 chr1 191384160 191384219 -90809445 + U2 snRNA snRNA 1 54 -134 221 244 49 24 chr1 191384261 191384343 -90809321 + MIR SINE MIR 179 262 0 814 159 32 0 chr1 191384617 191384743 -90808921 + FLAM_C SINE Alu 2 131 -2 27613 122 14 72 chr1 191385145 191390209 -90803455 + L1PA15 LINE L1 12 4782 -1364 37607 92 28 29 chr1 191390209 191396632 -90797032 + HERV9 LTR ERV1 17 4974 0 914 125 121 18 chr1 191396632 191396871 -90796793 + HERV9 LTR ERV1 873 1139 -5757 329 180 0 0 chr1 191396872 191396933 -90796731 + HERV9 LTR ERV1 7504 7564 -835 * 2167 97 10 0 chr1 191396929 191397218 -90796446 + HERV9 LTR ERV1 7789 8080 -319 * 4696 86 144 138 chr1 191397211 191398583 -90795081 + pTR5 LTR ERV1 897 2438 0 7643 48 7 0 chr1 191398586 191399942 -90793722 + L1PA7 LINE L1 4779 6141 -13 946 217 133 42 chr1 191400515 191400847 -90792817 + L1ME3A LINE L1 5804 6165 -5 5537 142 13 17 chr1 191401514 191402885 -90790779 + L1PA15 LINE L1 4783 6144 -21 239 372 64 27 chr1 191402967 191403155 -90790509 - MIR SINE MIR -20 242 48 34 72 0 0 chr1 191403566 191403635 -90790029 + AT_rich Low_complexity Low_complexity 1 69 0 982 223 52 13 chr1 191403887 191404116 -90789548 + MIR SINE MIR 3 240 -22 255 218 30 173 chr1 191404162 191404295 -90789369 + L2 LINE L2 3199 3312 -1 201 297 27 14 chr1 191404421 191404495 -90789169 + MIR SINE MIR 79 153 -109 222 303 66 13 chr1 191404591 191404667 -90788997 + MER91C DNA MER1_type 31 110 -30 21 0 0 0 chr1 191405528 191405549 -90788115 + AT_rich Low_complexity Low_complexity 1 21 0 217 248 83 90 chr1 191405635 191405780 -90787884 + L3b LINE CR1 1290 1433 -150 2327 63 0 17 chr1 191406160 191406461 -90787203 + AluY SINE Alu 6 301 -10 234 196 36 0 chr1 191406520 191406576 -90787088 - LTR16B LTR ERVL -404 60 3 407 310 60 22 chr1 191406587 191407039 -90786625 - L1M4 LINE L1 -2055 4091 3623 22 80 0 0 chr1 191407097 191407147 -90786517 + AT_rich Low_complexity Low_complexity 1 50 0 227 282 80 55 chr1 191407239 191407524 -90786140 - L1M4 LINE L1 -2954 3192 2889 826 133 7 0 chr1 191407524 191407667 -90785997 - L1MA8 LINE L1 -4 6287 6144 227 282 80 55 chr1 191407667 191407871 -90785793 - L1M4 LINE L1 -3257 2889 2691 386 232 50 10 chr1 191407951 191408050 -90785614 - MIR SINE MIR -42 220 118 1232 306 196 0 chr1 191408067 191408638 -90785026 - MER115 DNA AcHobo -9 684 2 727 215 35 6 chr1 191408740 191408912 -90784752 - MIR SINE MIR -12 250 74 322 253 32 21 chr1 191408968 191409063 -90784601 - MIR3 SINE MIR -1 207 112 187 356 110 8 chr1 191410431 191410549 -90783115 + L2 LINE L2 3142 3271 -1 184 194 129 32 chr1 191410541 191410603 -90783061 - L3 LINE CR1 -319 1258 1191 * 296 238 52 5 chr1 191410881 191410969 -90782695 + MIR SINE MIR 64 151 -62 1322 233 18 21 chr1 191411701 191412011 -90781653 - AluJo SINE Alu 0 309 1 2170 115 119 22 chr1 191412148 191412558 -90781106 + LTR7 LTR ERV1 1 450 0 12960 128 9 32 chr1 191412558 191415360 -90778304 + HERVH LTR ERV1 1 2983 -4730 530 184 0 0 chr1 191415358 191415461 -90778203 + HERVH LTR ERV1 3141 3243 -4470 * 3333 119 0 0 chr1 191415457 191415953 -90777711 + HERVH LTR ERV1 4654 5149 -2564 2127 169 9 7 chr1 191415944 191416370 -90777294 + HERVH LTR ERV1 5590 6016 -1697 * 2259 91 12 6 chr1 191416363 191416705 -90776959 + HERVH LTR ERV1 7157 7500 -213 1751 192 65 45 chr1 191416726 191417174 -90776490 + LTR2B LTR ERV1 34 490 0 1333 82 14 23 chr1 191417174 191417393 -90776271 + HERVH LTR ERV1 7497 7713 0 2175 112 119 22 chr1 191417393 191417803 -90775861 + LTR7 LTR ERV1 1 450 0 532 177 0 0 chr1 191418244 191418323 -90775341 - FRAM/FAM SINE Alu -105 71 1 257 289 108 4 chr1 191418535 191418659 -90775005 - MIR SINE MIR -62 146 15 234 321 0 37 chr1 191418921 191419002 -90774662 - MIR SINE MIR -82 180 103 302 262 97 19 chr1 191419198 191419301 -90774363 + MER91C DNA MER1_type 1 111 -29 501 277 181 0 chr1 191421065 191421220 -90772444 - MER5A DNA MER1_type 0 189 7 230 54 0 27 chr1 191421291 191421328 -90772336 + (TTTAA)n Simple_repeat Simple_repeat 2 37 0 2012 138 3 7 chr1 191421328 191421624 -90772040 - AluSg SINE Alu -13 297 1 570 309 98 17 chr1 191422456 191422692 -90770972 + MIR SINE MIR 8 262 0 646 319 158 39 chr1 191423730 191424773 -90768891 + L2 LINE L2 1698 2864 -450 366 242 0 0 chr1 191426349 191426440 -90767224 - LTR30 LTR ERV1 -109 613 523 436 329 72 13 chr1 191426565 191426802 -90766862 + MIR SINE MIR 2 252 -10 225 0 0 0 chr1 191427549 191427574 -90766090 + (TC)n Simple_repeat Simple_repeat 2 26 0 240 149 0 0 chr1 191427586 191427633 -90766031 + (CA)n Simple_repeat Simple_repeat 2 48 0 1888 143 27 3 chr1 191427849 191428143 -90765521 - AluJb SINE Alu -11 301 1 2439 74 3 0 chr1 191429218 191429515 -90764149 - AluSg SINE Alu -12 298 1 2167 116 0 3 chr1 191430032 191430324 -90763340 + AluSc SINE Alu 1 291 -18 313 230 54 14 chr1 191431845 191431919 -90761745 - L2 LINE L2 -10 3262 3186 204 330 107 40 chr1 191431963 191432187 -90761477 - L2 LINE L2 -1370 1944 1706 652 302 60 40 chr1 191433849 191434101 -90759563 + MIR SINE MIR 1 257 -5 282 356 12 31 chr1 191434790 191434950 -90758714 - L2 LINE L2 -595 2719 2563 241 373 133 15 chr1 191435685 191435948 -90757716 - L2 LINE L2 -27 3245 2952 23 0 0 0 chr1 191437063 191437086 -90756578 + AT_rich Low_complexity Low_complexity 1 23 0 346 329 43 7 chr1 191437908 191438089 -90755575 - MIR3 SINE MIR -7 201 15 510 252 61 0 chr1 191438772 191438887 -90754777 + L2 LINE L2 3187 3308 -5 962 71 0 0 chr1 191440151 191440277 -90753387 + L1PA5 LINE L1 6026 6151 -3 183 233 17 67 chr1 191440323 191440383 -90753281 - L3 LINE CR1 -1288 289 233 195 271 0 0 chr1 191440744 191440814 -90752850 + C-rich Low_complexity Low_complexity 4 73 0 269 203 27 27 chr1 191440882 191440956 -90752708 + CT-rich Low_complexity Low_complexity 2 75 0 311 235 0 17 chr1 191440973 191441088 -90752576 + CT-rich Low_complexity Low_complexity 2 114 0 607 293 33 33 chr1 191441567 191441667 -90751997 - MIR SINE MIR -48 214 115 15919 92 2 1 chr1 191441667 191444715 -90748949 + L1PA7 LINE L1 3095 6151 -3 607 293 33 33 chr1 191444715 191444826 -90748838 - MIR SINE MIR -146 116 3 202 268 0 18 chr1 191444911 191444967 -90748697 + L2 LINE L2 1778 1832 -1482 1007 168 11 42 chr1 191445004 191445194 -90748470 - AluJo SINE Alu -43 269 86 1668 232 186 33 chr1 191445196 191445799 -90747865 + L2 LINE L2 1825 2519 -795 3235 86 12 20 chr1 191445811 191446302 -90747362 - LTR15 LTR ERV1 -6 487 1 1331 154 70 35 chr1 191446302 191446493 -90747171 + L1MB5 LINE L1 5879 6085 -89 2920 127 2 2 chr1 191446493 191446917 -90746747 - MSTA LTR MaLR -4 424 1 1331 154 70 35 chr1 191446917 191447011 -90746653 + L1MB5 LINE L1 6085 6174 0 232 225 84 99 chr1 191447025 191447167 -90746497 + L3 LINE CR1 1206 1345 -232 824 325 83 54 chr1 191447563 191447865 -90745799 + L2 LINE L2 212 504 -2810 189 0 0 0 chr1 191447865 191447886 -90745778 + (CA)n Simple_repeat Simple_repeat 2 22 0 824 325 83 54 chr1 191447886 191448309 -90745355 + L2 LINE L2 504 958 -2356 2230 126 0 3 chr1 191448357 191448666 -90744998 - AluSx SINE Alu 0 312 5 4055 132 46 33 chr1 191448709 191449427 -90744237 + LTR8A LTR ERV1 1 727 0 214 322 9 70 chr1 191449768 191449883 -90743781 + MER5B DNA MER1_type 1 108 -70 236 263 40 26 chr1 191449885 191449961 -90743703 - MER69 DNA AcHobo 0 2526 2450 * 534 236 40 27 chr1 191449955 191450103 -90743561 - MER69 DNA AcHobo -2376 150 1 2435 89 0 0 chr1 191450169 191450473 -90743191 - AluSc SINE Alu -4 305 2 180 261 171 0 chr1 191450817 191450905 -90742759 - L3 LINE CR1 -149 1428 1326 * 646 305 26 0 chr1 191450903 191451054 -90742610 - L2 LINE L2 0 3272 3118 1255 196 87 3 chr1 191451167 191451205 -90742459 - MLT2B1 LTR ERVL 0 515 482 300 53 0 0 chr1 191451205 191451243 -90742421 + (TG)n Simple_repeat Simple_repeat 2 39 0 1255 196 87 3 chr1 191451243 191451588 -90742076 - MLT2B1 LTR ERVL -33 482 55 42 36 0 0 chr1 191451780 191451836 -90741828 + AT_rich Low_complexity Low_complexity 1 56 0 1222 180 67 14 chr1 191453710 191453994 -90739670 + L1MC2 LINE L1 6046 6344 0 694 229 36 0 chr1 191454041 191454181 -90739483 + MIR SINE MIR 13 157 -105 2062 117 26 23 chr1 191454184 191454492 -90739172 + AluSg SINE Alu 1 309 -1 356 320 50 27 chr1 191455156 191455378 -90738286 - Charlie8 DNA MER1_type -2153 264 38 269 261 154 0 chr1 191455503 191455568 -90738096 - MER91C DNA MER1_type -32 108 34 205 243 0 43 chr1 191456161 191456231 -90737433 + CT-rich Low_complexity Low_complexity 1 67 0 29 28 0 0 chr1 191459777 191459813 -90733851 + AT_rich Low_complexity Low_complexity 1 36 0 974 185 19 28 chr1 191460149 191460360 -90733304 - MER3 DNA MER1_type 0 209 1 341 302 7 60 chr1 191460364 191460513 -90733151 - MIR3 SINE MIR -31 177 37 593 260 188 10 chr1 191460598 191460806 -90732858 - MIR SINE MIR -14 248 4 289 188 25 0 chr1 191461357 191461437 -90732227 + (TA)n Simple_repeat Simple_repeat 1 82 0 230 221 59 0 chr1 191461450 191461518 -90732146 - L1MC4 LINE L1 -1357 6685 6614 552 293 11 17 chr1 191462338 191462512 -90731152 - MIR SINE MIR -3 259 87 389 243 58 0 chr1 191462531 191462634 -90731030 + MER20B DNA MER1_type 111 219 0 22 35 0 0 chr1 191463701 191463730 -90729934 + AT_rich Low_complexity Low_complexity 1 29 0 2417 81 10 0 chr1 191463842 191464151 -90729513 + AluSp SINE Alu 1 312 -1 297 229 42 0 chr1 191464249 191464345 -90729319 + L1ME4a LINE L1 5989 6088 -33 2388 103 0 3 chr1 191464402 191464713 -90728951 + AluSx SINE Alu 1 310 -2 873 231 89 34 chr1 191465661 191465916 -90727748 - MIR SINE MIR -1 261 12 21 0 0 0 chr1 191466388 191466409 -90727255 + AT_rich Low_complexity Low_complexity 1 21 0 484 139 47 0 chr1 191466415 191466587 -90727077 + (TA)n Simple_repeat Simple_repeat 1 180 0 1047 168 139 113 chr1 191466593 191467046 -90726618 + MER4C LTR ERV1 1 465 0 236 140 0 40 chr1 191467046 191467096 -90726568 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 539 316 7 13 chr1 191468533 191468685 -90724979 - MER5A DNA MER1_type -4 185 35 2154 96 3 0 chr1 191469727 191470029 -90723635 + AluSq SINE Alu 1 303 0 190 276 17 17 chr1 191470060 191470118 -90723546 + MIR SINE MIR 72 129 -79 457 323 124 5 chr1 191470273 191470490 -90723174 - MIR SINE MIR 0 262 20 1115 273 90 26 chr1 191470616 191471005 -90722659 - LTR16C LTR ERVL 0 491 78 2288 209 28 34 chr1 191471049 191471605 -90722059 - MLT1E2 LTR MaLR -2 624 85 2233 107 53 28 chr1 191471605 191471960 -90721704 - THE1B LTR MaLR 0 364 1 2288 209 28 34 chr1 191471960 191472043 -90721621 - MLT1E2 LTR MaLR -541 85 3 2191 91 17 3 chr1 191472044 191472331 -90721333 + AluSc SINE Alu 1 291 -18 605 335 47 4 chr1 191472700 191472933 -90720731 - MIR SINE MIR -12 250 8 358 262 36 0 chr1 191473204 191473288 -90720376 + L2 LINE L2 3227 3313 0 2186 115 0 0 chr1 191473683 191473979 -90719685 - AluSx SINE Alu -12 300 5 337 267 30 59 chr1 191474004 191474139 -90719525 + L1MC/D LINE L1 3575 3705 -2441 382 241 11 11 chr1 191475086 191475173 -90718491 + MIR SINE MIR 57 143 -119 478 210 38 25 chr1 191475747 191475904 -90717760 - MER103 DNA DNA -4 162 4 242 242 21 32 chr1 191475932 191476027 -90717637 + L1MC/D LINE L1 5653 5746 -2062 777 202 0 69 chr1 191476065 191476268 -90717396 - Tigger1 DNA MER2_type 0 2418 2230 914 131 91 0 chr1 191476271 191476447 -90717217 - Tigger1 DNA MER2_type -1705 713 522 4422 113 44 14 chr1 191476458 191477186 -90716478 - Tigger1 DNA MER2_type -198 2220 1471 724 248 6 19 chr1 191477186 191477347 -90716317 - FRAM SINE Alu -17 159 1 5736 144 24 13 chr1 191477349 191477709 -90715955 - Tigger1 DNA MER2_type -940 1478 1124 2462 70 3 0 chr1 191477709 191478011 -90715653 - AluY SINE Alu -8 303 1 5736 144 24 13 chr1 191478011 191478684 -90714980 - Tigger1 DNA MER2_type -1294 1124 433 671 71 0 20 chr1 191478691 191478790 -90714874 + Tigger1 DNA MER2_type 1049 1145 -1273 * 2141 170 63 5 chr1 191478788 191479199 -90714465 - Tigger1 DNA MER2_type -1983 435 1 210 167 0 0 chr1 191479462 191479498 -90714166 + A-rich Low_complexity Low_complexity 1 36 0 1140 259 25 3 chr1 191480101 191480426 -90713238 + L1MC4a LINE L1 5475 5806 -2002 3003 256 103 32 chr1 191480461 191481854 -90711810 + L1MC4a LINE L1 5895 7386 -422 358 328 103 6 chr1 191481884 191482058 -90711606 - L1MEd LINE L1 -5923 196 6 252 247 67 17 chr1 191482159 191482317 -90711347 + L1ME LINE L1 5593 5760 -370 26 0 0 0 chr1 191482553 191482579 -90711085 + AT_rich Low_complexity Low_complexity 1 26 0 332 240 77 48 chr1 191483106 191483210 -90710454 + MIR SINE MIR 47 153 -109 315 269 252 11 chr1 191483785 191483967 -90709697 + L1ME LINE L1 5566 5731 -390 2287 117 3 0 chr1 191484292 191484601 -90709063 - AluSp SINE Alu -3 310 1 204 291 0 0 chr1 191484688 191484743 -90708921 + L2 LINE L2 3209 3263 -9 2109 248 65 39 chr1 191484933 191485527 -90708137 - L1ME LINE L1 -5041 1042 385 2214 110 0 0 chr1 191485527 191485819 -90707845 + AluSq SINE Alu 1 292 -21 2109 248 65 39 chr1 191485819 191486215 -90707449 - L1ME LINE L1 -5698 385 1 447 253 77 72 chr1 191486478 191486534 -90707130 + MIR SINE MIR 28 82 -180 2314 90 104 23 chr1 191486534 191486879 -90706785 - THE1C LTR MaLR 0 375 3 9742 116 42 27 chr1 191486881 191487410 -90706254 - THE1C-int LTR MaLR 0 1580 1060 2311 80 10 7 chr1 191487410 191487709 -90705955 + AluY SINE Alu 1 300 -11 9742 116 42 27 chr1 191487709 191488736 -90704928 - THE1C-int LTR MaLR -520 1060 1 2310 87 119 0 chr1 191488736 191489071 -90704593 - THE1C LTR MaLR 0 375 1 447 253 77 72 chr1 191489071 191489231 -90704433 + MIR SINE MIR 81 249 -13 4652 166 11 5 chr1 191489255 191490100 -90703564 - L1MC1 LINE L1 -8 6325 5476 2782 16 0 0 chr1 191490354 191490662 -90703002 - AluY SINE Alu -3 308 1 2032 137 13 10 chr1 191490662 191490968 -90702696 - AluSx SINE Alu -5 307 1 351 211 0 28 chr1 191491377 191491448 -90702216 + L2 LINE L2 3204 3272 0 1962 257 71 19 chr1 191491473 191492068 -90701596 + MLT1E2 LTR MaLR 1 626 0 402 351 54 17 chr1 191493610 191493849 -90699815 - L2 LINE L2 -809 2505 2258 3077 209 39 21 chr1 191493860 191494650 -90699014 + L1MD2 LINE L1 5537 6340 -19 646 200 0 33 chr1 191495016 191495136 -90698528 + FRAM SINE Alu 8 123 -53 805 216 6 6 chr1 191495597 191495773 -90697891 + L1ME2 LINE L1 5501 5676 -490 2067 148 23 0 chr1 191495786 191496131 -90697533 + MLT2C1 LTR ERVL 2 354 -43 1066 200 33 33 chr1 191496139 191496444 -90697220 + L1ME2 LINE L1 5691 5995 -169 627 186 50 0 chr1 191496497 191496637 -90697027 + L1MA10 LINE L1 6175 6321 -13 2042 139 0 7 chr1 191497029 191497323 -90696341 + AluSx SINE Alu 1 292 -20 1042 129 0 0 chr1 191497965 191498112 -90695552 - AluSg/x SINE Alu -19 291 145 292 323 8 55 chr1 191498676 191498803 -90694861 - L2 LINE L2 -237 3035 2915 2388 307 108 19 chr1 191498958 191499943 -90693721 - L2 LINE L2 0 3313 2165 1633 200 0 3 chr1 191499943 191500243 -90693421 + AluJb SINE Alu 1 299 -13 2388 307 108 19 chr1 191500243 191500696 -90692968 - L2 LINE L2 -1148 2165 1754 447 78 0 0 chr1 191500853 191500917 -90692747 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 681 252 32 52 chr1 191502147 191502401 -90691263 - MIR SINE MIR -6 256 4 667 286 57 94 chr1 191502492 191503213 -90690451 + L1ME LINE L1 4318 5023 -1123 21 0 0 0 chr1 191503213 191503234 -90690430 + AT_rich Low_complexity Low_complexity 1 21 0 667 286 57 94 chr1 191503234 191503265 -90690399 + L1ME LINE L1 5023 5054 -1092 1518 162 39 4 chr1 191503290 191503549 -90690115 - AluJo SINE Alu -15 297 30 300 223 150 86 chr1 191503989 191504022 -90689642 + L1ME LINE L1 5582 5611 -510 2312 119 0 0 chr1 191504022 191504332 -90689332 + AluSq SINE Alu 1 310 -3 300 223 150 86 chr1 191504332 191504518 -90689146 + L1ME LINE L1 5611 5815 -306 1507 186 35 21 chr1 191505006 191505296 -90688368 - AluJb SINE Alu -18 294 1 1791 235 63 148 chr1 191505883 191506479 -90687185 + L2 LINE L2 1099 1744 -1570 6506 29 0 0 chr1 191506479 191507239 -90686425 + L1PA4 LINE L1 5390 6149 -6 1791 235 63 148 chr1 191507239 191507529 -90686135 + L2 LINE L2 1744 1879 -1435 1453 162 22 100 chr1 191507529 191507716 -90685948 - AluYb8 SINE Alu -22 296 143 2187 111 3 7 chr1 191507716 191508014 -90685650 - AluSx SINE Alu -15 297 1 1453 162 22 100 chr1 191508014 191508147 -90685517 - AluYb8 SINE Alu -175 143 1 1791 235 63 148 chr1 191508147 191508338 -90685326 + L2 LINE L2 1879 2085 -1229 367 193 0 0 chr1 191508656 191508739 -90684925 + MER53 DNA DNA 1 83 -106 320 156 78 0 chr1 191508679 191508756 -90684908 - MER53 DNA DNA -13 176 94 * 1639 57 0 5 chr1 191509625 191509835 -90683829 - L1PA6 LINE L1 -2 6152 5944 413 85 0 0 chr1 191509835 191509894 -90683770 - L1P LINE L1 -2276 3870 3812 2021 145 0 0 chr1 191510030 191510327 -90683337 - AluSg SINE Alu -13 297 1 21 0 0 0 chr1 191510350 191510371 -90683293 + AT_rich Low_complexity Low_complexity 1 21 0 4405 134 86 19 chr1 191510519 191510926 -90682738 + MER4D LTR ERV1 8 386 -517 2432 81 0 0 chr1 191510926 191511224 -90682440 - AluSg SINE Alu -11 299 2 4405 134 86 19 chr1 191511224 191511656 -90682008 + MER4D LTR ERV1 386 903 0 243 182 61 61 chr1 191511772 191511838 -90681826 + MER5A DNA MER1_type 29 94 -95 * 251 220 0 0 chr1 191511828 191511878 -90681786 + L2 LINE L2 3248 3297 -16 252 326 89 15 chr1 191512642 191512777 -90680887 + L2 LINE L2 3166 3310 -3 1543 208 0 0 chr1 191512875 191513164 -90680500 - AluJo SINE Alu -23 289 1 186 133 0 0 chr1 191513617 191513647 -90680017 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 3591 147 152 10 chr1 191514187 191514910 -90678754 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr1 191515196 191515217 -90678447 + AT_rich Low_complexity Low_complexity 1 21 0 1998 158 115 18 chr1 191516348 191516790 -90676874 + MER31A LTR ERV1 1 485 0 384 370 44 0 chr1 191517053 191517188 -90676476 + MER91A DNA MER1_type 52 192 -4 2418 133 18 60 chr1 191517258 191517710 -90675954 + Tigger2a DNA MER2_type 1 433 -1 21 0 0 0 chr1 191518942 191518963 -90674701 + AT_rich Low_complexity Low_complexity 1 21 0 236 284 40 0 chr1 191519005 191519079 -90674585 - MIR SINE MIR -66 196 120 2011 123 9 28 chr1 191519247 191519564 -90674100 - AluSx SINE Alu -1 311 1 554 206 84 115 chr1 191519891 191519938 -90673726 + MER20B DNA MER1_type 473 520 -263 2345 115 6 12 chr1 191519938 191520276 -90673388 - MER1B DNA MER1_type -1 336 1 554 206 84 115 chr1 191520276 191520549 -90673115 + MER20B DNA MER1_type 520 783 0 243 250 179 0 chr1 191520641 191520725 -90672939 + MIR SINE MIR 163 261 -1 228 306 60 8 chr1 191520826 191520960 -90672704 - MER104 DNA Tc2 -37 143 3 198 103 0 0 chr1 191522980 191523009 -90670655 + (A)n Simple_repeat Simple_repeat 1 29 0 226 269 15 30 chr1 191525335 191525402 -90668262 - L2 LINE L2 -7 3265 3200 506 276 292 4 chr1 191525466 191525723 -90667941 + L2 LINE L2 2299 2629 -685 635 306 136 35 chr1 191525837 191526235 -90667429 + L2 LINE L2 2856 3293 -20 2192 81 41 3 chr1 191526625 191526920 -90666744 - AluSg SINE Alu -4 306 1 832 175 31 93 chr1 191527205 191527357 -90666307 + AluJo SINE Alu 123 262 -50 2004 111 31 7 chr1 191527357 191527645 -90666019 - AluSg SINE Alu -15 295 1 832 175 31 93 chr1 191527645 191527686 -90665978 + AluJo SINE Alu 262 304 -8 2096 120 17 3 chr1 191528630 191528931 -90664733 - AluSx SINE Alu -7 305 1 854 201 6 39 chr1 191528937 191529106 -90664558 - AluJo/FRAM SINE Alu -11 301 137 1569 177 3 51 chr1 191529106 191529422 -90664242 - AluJo SINE Alu -10 302 2 261 200 14 0 chr1 191529446 191529516 -90664148 - L1ME4a LINE L1 0 6121 6051 245 259 160 8 chr1 191529655 191529786 -90663878 - L1ME4a LINE L1 -239 5882 5732 2305 113 0 7 chr1 191530239 191530549 -90663115 + AluSq SINE Alu 1 308 -5 373 109 0 16 chr1 191530632 191530696 -90662968 + Alu SINE Alu 240 302 0 291 312 37 37 chr1 191532118 191532227 -90661437 + L2 LINE L2 3200 3308 -5 2393 94 3 0 chr1 191533753 191534061 -90659603 - AluSx SINE Alu -3 309 1 309 247 0 24 chr1 191534069 191534154 -90659510 + MER112 DNA MER1_type 169 251 -9 306 265 112 0 chr1 191534216 191534314 -90659350 - MLT1H LTR MaLR 0 549 441 738 275 39 21 chr1 191535796 191536029 -90657635 + MIR SINE MIR 13 249 -13 594 293 143 49 chr1 191536060 191536666 -90656998 + L2 LINE L2 2644 3298 -15 2173 102 20 0 chr1 191537683 191537977 -90655687 - AluSx SINE Alu -12 300 1 1700 194 45 20 chr1 191538963 191539319 -90654345 - MLT1A1 LTR MaLR 0 365 1 1117 212 48 65 chr1 191539403 191539800 -90653864 - MLT1B LTR MaLR 0 390 1 2887 9 0 3 chr1 191539919 191540238 -90653426 - AluYb8 SINE Alu 0 318 1 26 50 0 0 chr1 191540419 191540459 -90653205 + AT_rich Low_complexity Low_complexity 1 40 0 1592 164 4 11 chr1 191540469 191540732 -90652932 + AluJo SINE Alu 21 281 -31 372 127 34 34 chr1 191540732 191540972 -90652692 + (TAGA)n Simple_repeat Simple_repeat 1 240 0 189 94 0 0 chr1 191541000 191541032 -90652632 + (GAAA)n Simple_repeat Simple_repeat 4 35 0 283 258 0 0 chr1 191541338 191541400 -90652264 - L2 LINE L2 0 3313 3252 2192 115 3 0 chr1 191541654 191541949 -90651715 + AluSx SINE Alu 1 296 -16 533 246 257 16 chr1 191542261 191542448 -90651216 - MIR SINE MIR -3 259 28 2218 165 26 5 chr1 191542663 191543087 -90650577 - MER65C LTR ERV1 -24 437 5 353 161 32 0 chr1 191543202 191543264 -90650400 + Tigger2 DNA MER2_type 2 65 -2653 1872 120 160 118 chr1 191543264 191543790 -90649874 + Tigger2 DNA MER2_type 210 757 -1961 875 178 65 0 chr1 191543790 191543975 -90649689 + Tigger2 DNA MER2_type 2522 2718 0 3191 129 28 2 chr1 191544054 191544094 -90649570 - MER41B LTR ERV1 -85 550 513 2428 91 0 0 chr1 191544094 191544403 -90649261 + AluSg SINE Alu 1 309 -1 3191 129 28 2 chr1 191544403 191544898 -90648766 - MER41B LTR ERV1 -122 513 1 9129 144 60 78 chr1 191544898 191547759 -90645905 - HUERS-P3b LTR ERV1 0 6563 3258 2123 117 7 0 chr1 191547759 191548063 -90645601 - AluSx SINE Alu 0 306 1 9129 144 60 78 chr1 191548063 191548705 -90644959 - HUERS-P3b LTR ERV1 -3305 3258 2606 2151 112 61 10 chr1 191548701 191549197 -90644467 - HUERS-P3b LTR ERV1 -3929 2017 1392 * 4142 121 23 20 chr1 191549198 191549885 -90643779 - HUERS-P3b LTR ERV1 -5256 690 2 1006 73 26 0 chr1 191549886 191550037 -90643627 - MER41B LTR ERV1 0 635 481 232 349 0 9 chr1 191550144 191550250 -90643414 - L1ME LINE L1 -608 5558 5454 368 312 65 29 chr1 191550825 191550995 -90642669 - MIR SINE MIR -40 222 47 2251 104 0 0 chr1 191551589 191551878 -90641786 - AluSx SINE Alu -23 289 1 2133 132 7 0 chr1 191552049 191552359 -90641305 + AluSq SINE Alu 2 313 0 3215 250 199 24 chr1 191553080 191554371 -90639293 + L2 LINE L2 1239 2755 -559 720 234 14 59 chr1 191554388 191554610 -90639054 + L2 LINE L2 3098 3309 -4 266 298 213 0 chr1 191554685 191554826 -90638838 - MIR SINE MIR -26 236 66 2174 97 35 0 chr1 191555152 191555440 -90638224 - AluSp SINE Alu -14 299 2 2349 100 0 0 chr1 191555441 191555741 -90637923 - AluSx SINE Alu -12 300 1 21 57 0 0 chr1 191556006 191556041 -90637623 + AT_rich Low_complexity Low_complexity 1 35 0 2199 122 0 0 chr1 191556434 191556729 -90636935 + AluSx SINE Alu 1 295 -17 25 0 0 0 chr1 191557116 191557141 -90636523 + AT_rich Low_complexity Low_complexity 1 25 0 220 286 44 44 chr1 191557244 191557335 -90636329 + L2 LINE L2 2526 2616 -698 1831 165 13 3 chr1 191557621 191557924 -90635740 - AluJb SINE Alu -6 306 1 269 295 0 0 chr1 191559118 191559179 -90634485 + L2 LINE L2 3246 3306 -7 21 0 0 0 chr1 191559302 191559323 -90634341 + AT_rich Low_complexity Low_complexity 1 21 0 1786 172 0 14 chr1 191560840 191561137 -90632527 - AluJo SINE Alu -19 293 1 1914 131 14 17 chr1 191561691 191561982 -90631682 - AluJb SINE Alu -22 290 1 425 306 140 22 chr1 191562465 191562687 -90630977 + MIR SINE MIR 15 262 0 814 135 15 23 chr1 191562935 191563068 -90630596 - FLAM_C SINE Alu 0 133 2 459 279 27 0 chr1 191563640 191563751 -90629913 - MIR SINE MIR -66 196 83 307 128 37 156 chr1 191563755 191563864 -90629800 + FLAM_A SINE Alu 31 126 -7 24 0 0 0 chr1 191565126 191565150 -90628514 + AT_rich Low_complexity Low_complexity 1 24 0 242 341 49 0 chr1 191566217 191566299 -90627365 - L2 LINE L2 -19 3253 3168 483 236 199 37 chr1 191566708 191566949 -90626715 - L2 LINE L2 0 3313 3034 2023 128 0 3 chr1 191567033 191567315 -90626349 - AluSq SINE Alu -30 283 3 2280 112 0 0 chr1 191567563 191567868 -90625796 - AluSx SINE Alu -7 305 1 5368 108 31 10 chr1 191567868 191569578 -90624086 - L1PA16 LINE L1 -11 6155 4376 2435 84 0 0 chr1 191569578 191569888 -90623776 - AluY SINE Alu -1 310 1 5368 108 31 10 chr1 191569888 191569976 -90623688 - L1PA16 LINE L1 -1790 4376 4291 2415 198 4 6 chr1 191569977 191570457 -90623207 - L1PA16 LINE L1 -1944 4202 3724 2111 116 3 3 chr1 191570974 191571268 -90622396 + AluSc SINE Alu 1 294 -15 877 258 24 19 chr1 191572489 191572702 -90620962 + MIR SINE MIR 49 262 0 495 221 194 3 chr1 191573956 191574135 -90619529 + MER58C DNA MER1_type 3 215 0 13629 127 63 12 chr1 191574171 191576459 -90617205 - Tigger1 DNA MER2_type 0 2418 14 279 244 26 13 chr1 191577911 191577989 -90615675 - L2 LINE L2 -1046 2268 2190 680 287 101 31 chr1 191577995 191578281 -90615383 - L2 LINE L2 0 3313 3008 489 226 28 9 chr1 191578348 191578454 -90615210 - L2 LINE L2 -506 2808 2701 208 263 18 0 chr1 191578822 191578879 -90614785 - MIR SINE MIR -63 145 88 2205 99 7 0 chr1 191579594 191579878 -90613786 + AluSg SINE Alu 1 286 -24 237 33 0 0 chr1 191580059 191580089 -90613575 + (T)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr1 191580124 191580152 -90613512 + (T)n Simple_repeat Simple_repeat 1 28 0 23 54 0 0 chr1 191580363 191580400 -90613264 + AT_rich Low_complexity Low_complexity 1 37 0 782 200 69 0 chr1 191580430 191580575 -90613089 - FRAM SINE Alu -21 155 1 325 289 16 16 chr1 191581336 191581457 -90612207 + MARNA DNA Mariner 269 389 -197 22 70 0 0 chr1 191582350 191582393 -90611271 + AT_rich Low_complexity Low_complexity 1 43 0 238 200 147 27 chr1 191584475 191584550 -90609114 - MER103 DNA DNA -82 84 1 203 229 42 0 chr1 191585205 191585253 -90608411 + L3 LINE CR1 1430 1479 -98 355 218 11 0 chr1 191585402 191585489 -90608175 + L1MB3 LINE L1 6083 6170 -13 311 249 139 0 chr1 191586261 191586367 -90607297 + L1MC4a LINE L1 5521 5640 -481 587 178 0 9 chr1 191586377 191586484 -90607180 + MER2 DNA MER2_type 59 164 -181 327 333 79 5 chr1 191586575 191586764 -90606900 + L1MC4a LINE L1 5678 5880 -1928 5323 117 170 22 chr1 191586818 191587890 -90605774 - Tigger3b DNA MER2_type 0 1231 2 584 234 305 4 chr1 191588422 191588661 -90605003 - MER5C DNA MER1_type 0 324 14 1942 149 10 3 chr1 191588834 191589135 -90604529 + 7SLRNA srpRNA srpRNA 1 303 -17 284 198 45 90 chr1 191589272 191589383 -90604281 + MLT1K LTR MaLR 466 571 -17 351 276 47 24 chr1 191589509 191589636 -90604028 + MIR SINE MIR 16 145 -63 240 331 162 0 chr1 191589856 191590010 -90603654 + L2 LINE L2 2553 2731 -583 677 263 154 60 chr1 191590325 191590740 -90602924 + MLT1H1 LTR MaLR 102 555 0 1199 211 182 39 chr1 191590858 191591251 -90602413 + MLT1C LTR MaLR 6 467 0 2450 68 0 0 chr1 191591993 191592289 -90601375 - AluSg SINE Alu -14 296 1 255 347 84 24 chr1 191592606 191592773 -90600891 - MER5B DNA MER1_type -1 177 1 2200 87 7 39 chr1 191593756 191594065 -90599599 + AluSx SINE Alu 1 299 -13 569 299 197 47 chr1 191594349 191595273 -90598391 + L2 LINE L2 1357 2419 -895 210 360 29 15 chr1 191595566 191595702 -90597962 + L2 LINE L2 2840 2977 -336 286 232 0 85 chr1 191595789 191595871 -90597793 + L2 LINE L2 3181 3255 -17 21 82 0 0 chr1 191597082 191597131 -90596533 + AT_rich Low_complexity Low_complexity 1 49 0 819 169 88 0 chr1 191598421 191598581 -90595083 - MER105 DNA DNA -3 201 28 587 240 85 49 chr1 191599665 191599911 -90593753 + MER112 DNA MER1_type 1 255 -1 1812 139 100 26 chr1 191600258 191600597 -90593067 + THE1B LTR MaLR 1 364 0 11840 80 14 1 chr1 191600597 191602156 -90591508 + THE1B-int LTR MaLR 1 1580 0 2159 134 57 17 chr1 191602156 191602506 -90591158 + THE1B LTR MaLR 1 364 0 233 324 54 27 chr1 191603325 191603436 -90590228 - L2 LINE L2 -9 3304 3191 1892 159 0 3 chr1 191603722 191604005 -90589659 + AluSx SINE Alu 1 282 -30 334 277 99 84 chr1 191604600 191604802 -90588862 - L2 LINE L2 -3 3269 3065 281 333 27 9 chr1 191604809 191604920 -90588744 + MIR3 SINE MIR 93 205 -3 2577 71 0 0 chr1 191605752 191606063 -90587601 + AluY SINE Alu 1 311 0 1797 130 18 11 chr1 191606259 191606536 -90587128 - AluJo SINE Alu -33 279 1 300 304 10 10 chr1 191606620 191606722 -90586942 + L1MC4a LINE L1 5880 5981 -1827 948 260 126 63 chr1 191608112 191609063 -90584601 + L1ME LINE L1 2 1023 -5060 828 145 0 28 chr1 191609064 191609209 -90584455 + FLAM_C SINE Alu 1 141 -2 1235 284 61 62 chr1 191609215 191609841 -90583823 + L1ME LINE L1 1061 1687 -4574 2270 104 0 0 chr1 191609841 191610138 -90583526 - AluSx SINE Alu -13 299 3 1235 284 61 62 chr1 191610138 191610331 -90583333 + L1ME LINE L1 1687 1879 -4382 27 29 0 0 chr1 191610355 191610389 -90583275 + AT_rich Low_complexity Low_complexity 1 34 0 2099 176 24 28 chr1 191610390 191610816 -90582848 - L1MA4 LINE L1 -19 6281 5858 1250 157 72 40 chr1 191610816 191611065 -90582599 - MER1B DNA MER1_type -12 327 71 3869 143 66 81 chr1 191611068 191612008 -90581656 + pTR5 LTR ERV1 804 2021 -417 302 276 10 0 chr1 191612011 191612109 -90581555 + LTR30 LTR ERV1 544 642 -80 1449 65 98 5 chr1 191612110 191612324 -90581340 + LTR12 LTR ERV1 480 713 -1 801 183 7 21 chr1 191612324 191612466 -90581198 - MER1B DNA MER1_type -157 140 1 2368 92 0 10 chr1 191612793 191613098 -90580566 - AluSg SINE Alu -8 302 1 2297 119 0 0 chr1 191613365 191613676 -90579988 - AluSq SINE Alu -2 311 1 186 296 0 0 chr1 191614186 191614230 -90579434 - L2 LINE L2 -21 3292 3249 299 376 21 7 chr1 191614742 191614883 -90578781 - L2 LINE L2 -940 2374 2232 2012 134 0 0 chr1 191615109 191615399 -90578265 + AluSg SINE Alu 1 290 -20 310 266 94 8 chr1 191618474 191618602 -90575062 + L1MA10 LINE L1 5264 5402 -2406 407 199 139 5 chr1 191618769 191618932 -90574732 + L1MA10 LINE L1 5989 6333 -1 275 283 145 25 chr1 191618913 191619072 -90574592 + L1ME4a LINE L1 5916 6093 -28 * 322 314 137 11 chr1 191619200 191619375 -90574289 - Charlie8 DNA MER1_type -2178 239 43 814 207 0 29 chr1 191621325 191621499 -90572165 - FRAM SINE Alu -5 171 3 29 101 0 0 chr1 191622710 191622809 -90570855 + GC_rich Low_complexity Low_complexity 1 99 0 4428 155 46 41 chr1 191623559 191624437 -90569227 + Tigger7 DNA MER2_type 1 882 -1605 709 114 0 65 chr1 191624426 191624478 -90569186 + Tigger7 DNA MER2_type 1571 1625 -862 * 4537 124 43 11 chr1 191624478 191625147 -90568517 + LTR8 LTR ERV1 1 691 0 709 114 0 65 chr1 191625147 191625217 -90568447 + Tigger7 DNA MER2_type 1625 1685 -802 * 2948 163 55 3 chr1 191625214 191625987 -90567677 - MER54A LTR ERVL -27 874 1 264 208 125 0 chr1 191626079 191626151 -90567513 + MLT1J LTR MaLR 100 180 -331 188 287 109 10 chr1 191626652 191626753 -90566911 + L2 LINE L2 2930 3040 -273 766 216 127 4 chr1 191626822 191627058 -90566606 + LTR37B LTR ERV1 199 463 -5 490 306 121 26 chr1 191627059 191627324 -90566340 + L2 LINE L2 3024 3313 0 185 284 15 15 chr1 191628191 191628258 -90565406 + L2 LINE L2 1381 1447 -1867 337 277 170 64 chr1 191628925 191629066 -90564598 + MER5A DNA MER1_type 32 187 -2 694 309 46 51 chr1 191629067 191629417 -90564247 + L2 LINE L2 2804 3151 -162 600 225 46 12 chr1 191629426 191629599 -90564065 + MER104 DNA MER2_type 1 179 -1 784 224 78 35 chr1 191629806 191630061 -90563603 + LTR37B LTR ERV1 201 466 -2 505 265 37 7 chr1 191630063 191630199 -90563465 + L2 LINE L2 3174 3313 0 1302 204 39 29 chr1 191630329 191630608 -90563056 - AluJo SINE Alu -13 299 18 1725 174 213 45 chr1 191630666 191631150 -90562514 - MER34B LTR ERV1 0 565 1 1986 169 16 60 chr1 191632435 191632868 -90560796 + L1MB7 LINE L1 5755 6168 -16 2373 151 83 5 chr1 191632887 191633284 -90560380 - MSTA LTR MaLR 0 428 1 2107 135 132 23 chr1 191633529 191633915 -90559749 + MSTA LTR MaLR 1 428 0 1664 156 61 40 chr1 191634026 191634268 -90559396 + L1MA9 LINE L1 5957 6210 -102 1696 165 0 67 chr1 191634268 191634596 -90559068 - AluJb SINE Alu -6 306 1 1664 156 61 40 chr1 191634596 191634699 -90558965 + L1MA9 LINE L1 6210 6309 -3 6092 45 1 0 chr1 191634746 191635440 -90558224 + L1PA5 LINE L1 5459 6153 -1 186 103 0 0 chr1 191635484 191635513 -90558151 + (A)n Simple_repeat Simple_repeat 1 29 0 557 235 26 2 chr1 191635732 191635862 -90557802 - MLT1H LTR MaLR -361 188 12 486 215 11 0 chr1 191636323 191636416 -90557248 + MLT2E LTR ERVL 535 628 0 1260 114 0 6 chr1 191637716 191637892 -90555772 + AluSg/x SINE Alu 134 308 -2 287 184 0 20 chr1 191638553 191638602 -90555062 + MER5B DNA MER1_type 2 49 -129 26 0 0 0 chr1 191638606 191638632 -90555032 + AT_rich Low_complexity Low_complexity 1 26 0 424 218 110 44 chr1 191638854 191639020 -90554644 - MER5B DNA MER1_type -17 161 4 744 203 90 28 chr1 191639023 191639092 -90554572 + MER5A DNA MER1_type 1 64 -125 2323 66 0 10 chr1 191639092 191639380 -90554284 + AluSq SINE Alu 12 296 -17 744 203 90 28 chr1 191639380 191639487 -90554177 + MER5A DNA MER1_type 64 188 -1 893 200 35 5 chr1 191639841 191640041 -90553623 - L1MCa LINE L1 -4582 1728 1523 241 136 91 0 chr1 191640042 191640086 -90553578 - MLT2B2 LTR ERVL 0 515 468 400 213 13 0 chr1 191640115 191640190 -90553474 - Tigger5 DNA MER2_type -2246 77 2 2487 151 30 84 chr1 191640201 191640545 -90553119 - MLT2B2 LTR ERVL -45 470 109 2174 108 0 10 chr1 191640545 191640842 -90552822 - AluSc SINE Alu -13 296 3 1741 168 10 7 chr1 191640844 191641142 -90552522 - AluJo SINE Alu -13 299 1 2487 151 30 84 chr1 191641142 191641291 -90552373 - MLT2B2 LTR ERVL -407 108 1 266 221 68 118 chr1 191641291 191641460 -90552204 - L1MCa LINE L1 -4644 1485 1182 2416 67 7 0 chr1 191641460 191641760 -90551904 - AluY SINE Alu -9 302 1 266 221 68 118 chr1 191641760 191641797 -90551867 - L1MCa LINE L1 -4947 1182 1145 1899 116 94 11 chr1 191641839 191642115 -90551549 - AluSq SINE Alu -14 299 1 1157 158 46 85 chr1 191642180 191642509 -90551155 + MLT1C LTR MaLR 3 318 -149 672 206 50 70 chr1 191642593 191642792 -90550872 + MLT1C LTR MaLR 273 467 0 559 252 16 0 chr1 191643173 191643300 -90550364 + MLT1H LTR MaLR 413 541 -8 269 293 158 26 chr1 191643375 191643716 -90549948 - HAL1 LINE L1 -891 1616 1231 791 241 88 52 chr1 191644606 191645101 -90548563 - L1MCa LINE L1 -5147 972 410 630 165 0 0 chr1 191695124 191695221 -90498443 + AluJb SINE Alu 194 290 -22 384 274 53 9 chr1 191695601 191695714 -90497950 + MIR3 SINE MIR 82 199 -9 21 0 0 0 chr1 191697925 191697946 -90495718 + AT_rich Low_complexity Low_complexity 1 21 0 226 234 0 0 chr1 191698367 191698414 -90495250 + (TG)n Simple_repeat Simple_repeat 2 48 0 234 292 92 8 chr1 191701138 191701268 -90492396 + MIR SINE MIR 110 250 -12 837 258 231 45 chr1 191701486 191701971 -90491693 - L3 LINE CR1 -83 1494 920 207 0 0 0 chr1 191702084 191702107 -90491557 + (CA)n Simple_repeat Simple_repeat 2 24 0 444 273 139 18 chr1 191702899 191703064 -90490600 + L2 LINE L2 3129 3313 0 2235 110 0 0 chr1 191703498 191703797 -90489867 - AluSg SINE Alu -9 301 3 1616 160 54 17 chr1 191703829 191704123 -90489541 + AluJb SINE Alu 1 305 -7 22 56 0 0 chr1 191705581 191705617 -90488047 + AT_rich Low_complexity Low_complexity 1 36 0 392 356 40 24 chr1 191705855 191706105 -90487559 - L1MEd LINE L1 -5558 561 308 279 250 64 43 chr1 191706151 191706291 -90487373 - L1MEd LINE L1 -5965 154 12 2188 130 0 0 chr1 191706313 191706621 -90487043 - AluSq SINE Alu -5 308 1 329 233 0 14 chr1 191706565 191706638 -90487026 - AluSg/x SINE Alu -111 191 120 21 0 0 0 chr1 191706736 191706757 -90486907 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 191708092 191708130 -90485534 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr1 191710406 191710434 -90483230 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 191712354 191712380 -90481284 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr1 191713878 191713908 -90479756 + AT_rich Low_complexity Low_complexity 1 30 0 2140 315 153 38 chr1 191713989 191715653 -90478011 - L2 LINE L2 -8 3264 1394 356 272 107 59 chr1 191715601 191715770 -90477894 + MIR SINE MIR 86 262 0 * 1836 175 27 12 chr1 191715815 191716147 -90477517 - MER1B DNA MER1_type 0 337 1 387 0 0 0 chr1 191716313 191716356 -90477308 + (TG)n Simple_repeat Simple_repeat 2 44 0 24 96 0 0 chr1 191717003 191717076 -90476588 + AT_rich Low_complexity Low_complexity 1 73 0 6260 176 161 28 chr1 191719399 191720947 -90472717 - MER52A LTR ERV1 0 1755 1 287 281 37 59 chr1 191721963 191722098 -90471566 + MIR SINE MIR 71 202 -60 25 31 0 0 chr1 191723177 191723209 -90470455 + AT_rich Low_complexity Low_complexity 1 32 0 440 284 56 0 chr1 191723465 191723627 -90470037 - L1ME LINE L1 -438 5683 5513 256 260 98 32 chr1 191725997 191726120 -90467544 - L3b LINE CR1 -204 1379 1249 22 35 0 0 chr1 191726145 191726174 -90467490 + AT_rich Low_complexity Low_complexity 1 29 0 340 278 78 0 chr1 191727679 191727794 -90465870 - MER112 DNA MER1_type -13 247 124 278 233 0 14 chr1 191727820 191727893 -90465771 + (TA)n Simple_repeat Simple_repeat 1 72 0 315 259 0 25 chr1 191727898 191727979 -90465685 - MER112 DNA MER1_type -180 80 2 322 338 56 48 chr1 191728008 191728239 -90465425 + MIR SINE MIR 2 234 -28 22 35 0 0 chr1 191728244 191728273 -90465391 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 191728398 191728428 -90465236 + AT_rich Low_complexity Low_complexity 1 30 0 2402 52 3 0 chr1 191728925 191729215 -90464449 - AluY SINE Alu -20 291 1 259 257 193 46 chr1 191729706 191729815 -90463849 - L2 LINE L2 -11 3261 3137 215 341 116 45 chr1 191730616 191730883 -90462781 - L2 LINE L2 -2 3311 3026 1652 148 72 14 chr1 191732009 191732299 -90461365 - AluJo SINE Alu -5 307 1 2214 110 3 10 chr1 191733018 191733328 -90460336 - AluSx SINE Alu -4 308 1 1892 161 3 22 chr1 191733331 191733647 -90460017 - 7SLRNA srpRNA srpRNA -9 311 2 814 183 0 0 chr1 191733651 191733793 -90459871 - FLAM_C SINE Alu -1 142 1 183 362 110 8 chr1 191734375 191734502 -90459162 + L3 LINE CR1 125 264 -1313 2612 121 33 26 chr1 191736971 191737401 -90456263 + Tigger2a DNA MER2_type 2 434 0 3804 89 11 4 chr1 191738352 191738881 -90454783 - L1PA15 LINE L1 -3 6162 5630 2024 136 10 3 chr1 191738885 191739195 -90454469 - AluSq SINE Alu -1 312 1 22 0 0 0 chr1 191739253 191739275 -90454389 + AT_rich Low_complexity Low_complexity 1 22 0 348 283 10 0 chr1 191739649 191739748 -90453916 - MIR SINE MIR -86 176 77 414 300 25 8 chr1 191739793 191739913 -90453751 + L3 LINE CR1 1449 1570 -7 21 0 0 0 chr1 191740900 191740921 -90452743 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 191741866 191741886 -90451778 + (A)n Simple_repeat Simple_repeat 1 20 0 235 94 57 123 chr1 191741973 191742079 -90451585 - L1ME4a LINE L1 -5 6116 6018 615 272 86 12 chr1 191742911 191743073 -90450591 + MIR3 SINE MIR 21 194 -14 23 54 0 0 chr1 191744150 191744187 -90449477 + AT_rich Low_complexity Low_complexity 1 37 0 322 279 72 27 chr1 191745248 191745359 -90448305 + L2 LINE L2 3191 3306 -7 212 345 92 48 chr1 191746185 191746391 -90447273 - L2 LINE L2 -1414 1900 1686 30 77 0 0 chr1 191746409 191746474 -90447190 + AT_rich Low_complexity Low_complexity 1 65 0 25 65 0 0 chr1 191748481 191748527 -90445137 + AT_rich Low_complexity Low_complexity 1 46 0 537 312 107 51 chr1 191748567 191749031 -90444633 + HAL1b LINE L1 1 430 -918 304 284 123 7 chr1 191749033 191749188 -90444476 + L1MDa LINE L1 1776 1948 -4592 329 164 0 0 chr1 191749867 191749922 -90443742 - L1PB4 LINE L1 -13 6143 6089 504 258 105 0 chr1 191750033 191750157 -90443507 + L2 LINE L2 3136 3272 0 1302 161 0 0 chr1 191750269 191750474 -90443190 + MER2 DNA MER2_type 2 206 -139 21 82 0 0 chr1 191750669 191750718 -90442946 + AT_rich Low_complexity Low_complexity 1 49 0 1083 160 0 17 chr1 191751006 191751181 -90442483 - FRAM SINE Alu -5 171 1 218 232 134 12 chr1 191751511 191751593 -90442071 - MIR SINE MIR -10 252 161 405 269 44 25 chr1 191751670 191751830 -90441834 - MER103 DNA DNA -2 164 2 1710 168 0 27 chr1 191752128 191752426 -90441238 - AluJb SINE Alu -22 290 1 280 328 160 8 chr1 191752470 191752589 -90441075 + L2 LINE L2 3136 3272 0 382 293 68 94 chr1 191752749 191753015 -90440649 - MIR SINE MIR 0 262 4 290 330 91 19 chr1 191753025 191753234 -90440430 - L2 LINE L2 -1001 2313 2090 2148 248 94 42 chr1 191754823 191755643 -90438021 + L1ME3A LINE L1 5267 6129 -41 513 199 244 0 chr1 191755907 191756063 -90437601 - MER3 DNA MER1_type 0 209 16 2433 70 3 10 chr1 191756221 191756533 -90437131 + AluSp SINE Alu 1 310 -3 3123 169 20 4 chr1 191756553 191757093 -90436571 + MER44D DNA MER2_type 1 604 -1 23 0 0 0 chr1 191757302 191757325 -90436339 + AT_rich Low_complexity Low_complexity 1 23 0 39 22 0 0 chr1 191758272 191758318 -90435346 + AT_rich Low_complexity Low_complexity 1 46 0 883 207 66 51 chr1 191758864 191759120 -90434544 - L1ME2 LINE L1 -17 6147 5888 395 304 62 19 chr1 191759121 191759378 -90434286 + L1ME4a LINE L1 5581 5848 -273 1393 350 74 18 chr1 191760383 191761165 -90432499 - L2 LINE L2 -337 2977 2152 24 0 0 0 chr1 191761537 191761561 -90432103 + AT_rich Low_complexity Low_complexity 1 24 0 375 215 57 62 chr1 191761627 191761804 -90431860 + L1ME4a LINE L1 4298 4473 -1673 218 196 0 0 chr1 191762005 191762056 -90431608 + A-rich Low_complexity Low_complexity 5 55 0 23 33 0 0 chr1 191764616 191764646 -90429018 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr1 191765937 191765969 -90427695 + AT_rich Low_complexity Low_complexity 1 32 0 24 85 0 0 chr1 191766376 191766435 -90427229 + AT_rich Low_complexity Low_complexity 1 59 0 1631 168 3 28 chr1 191766468 191766759 -90426905 + AluJo SINE Alu 11 294 -18 837 262 194 32 chr1 191766773 191767452 -90426212 + L1ME4a LINE L1 5318 6106 -15 23 0 0 0 chr1 191767686 191767709 -90425955 + AT_rich Low_complexity Low_complexity 1 23 0 2207 96 3 16 chr1 191768508 191768811 -90424853 - AluSg SINE Alu -11 299 1 22 0 0 0 chr1 191768884 191768906 -90424758 + AT_rich Low_complexity Low_complexity 1 22 0 331 267 0 0 chr1 191769003 191769089 -90424575 + AluSc SINE Alu 162 247 -52 1462 121 19 0 chr1 191769090 191769305 -90424359 + AluSg/x SINE Alu 85 303 -9 429 233 126 0 chr1 191769365 191769468 -90424196 + L2 LINE L2 3191 3306 -7 496 282 120 14 chr1 191769471 191769687 -90423977 - MIR SINE MIR 0 262 24 30 59 0 0 chr1 191770078 191770129 -90423535 + AT_rich Low_complexity Low_complexity 1 51 0 23 54 0 0 chr1 191770137 191770174 -90423490 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 191771239 191771262 -90422402 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 191771463 191771484 -90422180 + AT_rich Low_complexity Low_complexity 1 21 0 320 297 115 36 chr1 191771887 191772052 -90421612 - MIR SINE MIR -70 192 15 956 258 19 19 chr1 191772490 191772746 -90420918 + MIR SINE MIR 7 262 0 1966 154 13 0 chr1 191772990 191773295 -90420369 + AluSx SINE Alu 1 309 -3 383 0 21 0 chr1 191773801 191773848 -90419816 + (CA)n Simple_repeat Simple_repeat 2 49 0 995 184 170 21 chr1 191778421 191778703 -90414961 - MER5C DNA MER1_type 0 324 1 2116 50 3 14 chr1 191778813 191779096 -90414568 - L1P LINE L1 -5376 770 491 12022 22 1 0 chr1 191779096 191781269 -90412395 + L1PA4 LINE L1 3974 6152 -3 420 279 18 67 chr1 191781446 191781611 -90412053 - MIR SINE MIR -58 204 48 353 260 0 0 chr1 191781674 191781747 -90411917 - L2 LINE L2 -7 3306 3234 1689 259 119 52 chr1 191781958 191782820 -90410844 - L2 LINE L2 -777 2537 1618 189 309 36 12 chr1 191782823 191782907 -90410757 - L2 LINE L2 -1520 1794 1709 7404 68 2 1 chr1 191782914 191784001 -90409663 + L1P3 LINE L1 4384 5472 -700 28 0 0 0 chr1 191785227 191785255 -90408409 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 191786141 191786162 -90407502 + AT_rich Low_complexity Low_complexity 1 21 0 4051 61 33 0 chr1 191786310 191786853 -90406811 - L1PA7 LINE L1 -3 6151 5591 25 83 0 0 chr1 191787061 191787121 -90406543 + AT_rich Low_complexity Low_complexity 1 60 0 185 128 0 26 chr1 191787140 191787179 -90406485 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 330 193 0 0 chr1 191788009 191788066 -90405598 - MIR SINE MIR -204 58 2 783 196 0 0 chr1 191788163 191788301 -90405363 + MLT1A1 LTR MaLR 1 138 -227 1819 146 106 3 chr1 191788307 191788629 -90405035 - THE1B LTR MaLR -6 358 4 1265 175 26 4 chr1 191788630 191788858 -90404806 + MLT1A1 LTR MaLR 133 365 0 455 305 109 0 chr1 191789002 191789076 -90404588 - MIR SINE MIR -62 200 135 269 89 22 0 chr1 191789076 191789121 -90404543 + (TA)n Simple_repeat Simple_repeat 2 47 0 455 305 109 0 chr1 191789121 191789220 -90404444 - MIR SINE MIR -127 135 8 413 238 17 23 chr1 191789380 191789515 -90404149 + MLT1I LTR MaLR 80 207 -202 22 0 0 0 chr1 191790288 191790310 -90403354 + AT_rich Low_complexity Low_complexity 1 22 0 639 286 111 0 chr1 191790426 191790643 -90403021 - MIR SINE MIR 0 262 22 513 151 21 32 chr1 191791545 191791638 -90402026 + AluJb SINE Alu 38 129 -183 314 272 25 0 chr1 191793065 191793146 -90400518 - MER68 LTR ERV1 -451 111 29 1606 182 20 35 chr1 191793343 191793689 -90399975 + MER58B DNA MER1_type 1 341 0 21 57 0 0 chr1 191793894 191793929 -90399735 + AT_rich Low_complexity Low_complexity 1 35 0 5617 216 103 33 chr1 191794275 191795802 -90397862 + L1ME4a LINE L1 3181 4884 -1274 1756 80 30 4 chr1 191795802 191796039 -90397625 - AluY SINE Alu -11 300 58 5617 216 103 33 chr1 191796039 191796503 -90397161 + L1ME4a LINE L1 4884 5314 -844 2189 134 0 0 chr1 191796783 191797088 -90396576 - AluSx SINE Alu -7 305 1 2200 121 3 0 chr1 191797290 191797597 -90396067 - AluSx SINE Alu -4 308 1 268 261 42 92 chr1 191797868 191797987 -90395677 + MIR3 SINE MIR 90 202 -6 203 306 118 0 chr1 191798096 191798181 -90395483 + MIR3 SINE MIR 108 202 -6 21 57 0 0 chr1 191798575 191798610 -90395054 + AT_rich Low_complexity Low_complexity 1 35 0 478 257 133 5 chr1 191798839 191799057 -90394607 + L1ME4a LINE L1 5619 5864 -257 945 238 55 25 chr1 191800116 191800519 -90393145 + L1ME1 LINE L1 2206 2620 -3526 * 1082 229 50 3 chr1 191800517 191800737 -90392927 + L1ME1 LINE L1 2849 3088 -3058 261 0 0 0 chr1 191800737 191800766 -90392898 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1082 229 50 3 chr1 191800766 191800847 -90392817 + L1ME1 LINE L1 3088 3164 -2982 * 2344 220 83 22 chr1 191800843 191802124 -90391540 + L1ME1 LINE L1 4705 6161 -5 530 243 65 9 chr1 191803909 191804078 -90389586 + MER104 DNA Tc2 1 180 0 849 314 85 28 chr1 191804586 191805044 -90388620 + L3 LINE CR1 1093 1576 -1 298 286 19 19 chr1 191807353 191807458 -90386206 - MER103 DNA DNA -55 111 7 415 284 46 50 chr1 191807693 191807975 -90385689 + L1M4 LINE L1 4567 4847 -1299 1388 144 0 132 chr1 191808246 191808572 -90385092 + AluSx SINE Alu 5 287 -25 224 232 14 43 chr1 191808938 191809007 -90384657 - L2 LINE L2 -60 3253 3187 27 29 0 0 chr1 191809600 191809634 -90384030 + AT_rich Low_complexity Low_complexity 1 34 0 503 320 86 17 chr1 191809652 191809886 -90383778 - MIR SINE MIR -11 251 2 1776 219 50 18 chr1 191809974 191810418 -90383246 + MLT1C LTR MaLR 8 465 -2 2246 269 67 3 chr1 191810468 191811107 -90382557 + L1MEc LINE L1 112 791 -5605 758 156 156 13 chr1 191811117 191811271 -90382393 + AluJb SINE Alu 121 296 -16 1790 113 0 0 chr1 191812368 191812607 -90381057 + AluSg SINE Alu 1 239 -71 2246 98 7 0 chr1 191814391 191814688 -90378976 - AluSc SINE Alu -10 299 1 1133 107 0 7 chr1 191814925 191815074 -90378590 + AluJo SINE Alu 1 148 -164 415 301 47 75 chr1 191815099 191815312 -90378352 + LTR49-int LTR ERV1 18 224 -6039 2039 190 81 43 chr1 191815630 191816247 -90377417 + LTR49-int LTR ERV1 13 1835 -5702 * 3026 147 4 6 chr1 191816244 191816721 -90376943 - MER4B-int LTR ERV1 -3192 3566 3091 * 8027 156 48 63 chr1 191816712 191819328 -90374336 + LTR49-int LTR ERV1 3553 5742 -589 2714 148 9 18 chr1 191819330 191819775 -90373889 + LTR26B LTR ERV1 30 470 -61 203 189 0 0 chr1 191819775 191819812 -90373852 + A-rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr1 191820492 191820525 -90373139 + AT_rich Low_complexity Low_complexity 1 33 0 2336 95 0 7 chr1 191820901 191821207 -90372457 + AluSg SINE Alu 1 304 -6 509 286 65 18 chr1 191821658 191821826 -90371838 + LTR67 LTR ERVL 372 547 -10 25 0 0 0 chr1 191821896 191821921 -90371743 + AT_rich Low_complexity Low_complexity 1 25 0 682 153 17 0 chr1 191821979 191822097 -90371567 - L1MC/D LINE L1 -592 5752 5633 4473 168 31 7 chr1 191822108 191822881 -90370783 + L1P3 LINE L1 10 801 -5660 28933 121 18 18 chr1 191822984 191827393 -90366271 + L1PA8 LINE L1 611 5062 -1425 192 40 0 0 chr1 191827393 191827418 -90366246 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 28933 121 18 18 chr1 191827418 191828840 -90364824 + L1PA8 LINE L1 5062 6482 -5 300 172 0 0 chr1 191829449 191829507 -90364157 + (TA)n Simple_repeat Simple_repeat 1 58 0 1398 190 88 7 chr1 191829704 191829978 -90363686 + AluJo SINE Alu 1 296 -16 19639 47 0 4 chr1 191832757 191836028 -90357636 + L1PA5 LINE L1 2872 6148 -6 23 0 0 0 chr1 191836031 191836054 -90357610 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr1 191836072 191836097 -90357567 + (A)n Simple_repeat Simple_repeat 1 25 0 352 210 126 77 chr1 191836271 191836414 -90357250 + L2 LINE L2 1771 1920 -1394 360 270 45 9 chr1 191836569 191836680 -90356984 + MER112 DNA MER1_type 41 155 -105 1661 176 116 126 chr1 191836788 191837510 -90356154 + LTR8A LTR ERV1 1 715 -12 574 291 136 39 chr1 191837833 191838218 -90355446 - L1MEc LINE L1 -1714 4501 4155 1992 140 3 3 chr1 191838218 191838510 -90355154 - AluJb SINE Alu -20 292 1 574 291 136 39 chr1 191838510 191838904 -90354760 - L1MEc LINE L1 -2060 4155 3646 403 309 82 5 chr1 191838966 191839160 -90354504 - L1MEc LINE L1 -3734 2481 2273 2581 64 0 3 chr1 191839188 191839500 -90354164 + AluY SINE Alu 1 311 0 809 227 14 34 chr1 191839538 191839745 -90353919 - MER3 DNA MER1_type 0 209 7 364 280 128 41 chr1 191839760 191840174 -90353490 - L1MEc LINE L1 -4136 2260 1811 363 304 43 43 chr1 191840875 191841155 -90352509 + L1MEd LINE L1 910 1189 -4930 * 2059 251 52 61 chr1 191841154 191842626 -90351038 + L1MB5 LINE L1 2 1694 -4952 2828 197 60 24 chr1 191842641 191845256 -90348408 + L1MB5 LINE L1 3526 6307 -365 2560 143 44 2 chr1 191845256 191845691 -90347973 - MSTB2 LTR MaLR -4 453 1 2828 197 60 24 chr1 191845691 191845795 -90347869 + L1MB5 LINE L1 6307 6406 -266 295 376 60 23 chr1 191845841 191845974 -90347690 + L2 LINE L2 3134 3271 -1 214 387 28 0 chr1 191845990 191846096 -90347568 + L2 LINE L2 2734 2842 -472 494 348 71 64 chr1 191846115 191846411 -90347253 - L2 LINE L2 -35 3237 2940 204 232 36 18 chr1 191847434 191847490 -90346174 - MIR SINE MIR -63 145 89 234 0 0 0 chr1 191848978 191849004 -90344660 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 264 338 0 0 chr1 191849206 191849277 -90344387 - L2 LINE L2 -1 3271 3201 207 289 84 60 chr1 191849413 191849496 -90344168 - L2 LINE L2 -18 3254 3170 288 394 80 8 chr1 191849512 191849776 -90343888 + L2 LINE L2 2364 2646 -668 185 216 245 78 chr1 191849948 191850050 -90343614 + L2 LINE L2 3192 3310 -3 313 214 22 22 chr1 191850087 191850176 -90343488 + L1ME1 LINE L1 121 209 -5910 387 226 48 83 chr1 191850195 191850363 -90343301 + L1MC4a LINE L1 6763 6924 -884 253 288 192 20 chr1 191850537 191850793 -90342871 + L1MC4 LINE L1 7019 7395 -492 1525 58 16 188 chr1 191850793 191851102 -90342562 + LTR12 LTR ERV1 8 263 -451 461 273 105 19 chr1 191851117 191851384 -90342280 + L1ME3A LINE L1 5594 5883 -287 2718 249 45 19 chr1 191851421 191852249 -90341415 - L1ME1 LINE L1 -8 6158 5310 1807 261 60 24 chr1 191852296 191852882 -90340782 + L1ME1 LINE L1 3239 3857 -2272 2403 161 34 0 chr1 191852882 191853297 -90340367 + MSTB1 LTR MaLR 4 432 0 1807 261 60 24 chr1 191853297 191853431 -90340233 + L1ME1 LINE L1 3857 3985 -2144 1736 163 9 20 chr1 191853437 191853786 -90339878 - L1 LINE L1 -1306 4840 4496 1669 241 55 17 chr1 191853851 191854485 -90339179 + L1ME1 LINE L1 4147 4843 -1286 483 248 22 4 chr1 191854509 191854730 -90338934 - L1MD2 LINE L1 -37 6322 6047 * 727 198 99 0 chr1 191854728 191854920 -90338744 - L1MDa LINE L1 -4230 2310 2100 671 239 55 1 chr1 191854919 191855200 -90338464 + L1ME1 LINE L1 5130 5425 -724 * 1865 209 24 60 chr1 191855213 191855710 -90337954 - MLT1D LTR MaLR 0 505 27 2144 208 124 32 chr1 191855773 191856404 -90337260 + L1ME1 LINE L1 5443 6131 -18 22 35 0 0 chr1 191856404 191856433 -90337231 + AT_rich Low_complexity Low_complexity 1 29 0 249 293 97 50 chr1 191856509 191856549 -90337115 + L1MEd LINE L1 949 986 -5133 2181 129 0 0 chr1 191856549 191856852 -90336812 + AluSx SINE Alu 1 303 -9 249 293 97 50 chr1 191856852 191857070 -90336594 + L1MEd LINE L1 986 1219 -4900 640 266 79 33 chr1 191857264 191857505 -90336159 + MIR SINE MIR 5 256 -6 288 290 97 40 chr1 191857600 191857724 -90335940 + MIR SINE MIR 68 198 -64 203 402 56 24 chr1 191858492 191858743 -90334921 - L2 LINE L2 -349 2965 2707 724 140 7 7 chr1 191860512 191860648 -90333016 + CT-rich Low_complexity Low_complexity 1 136 0 21 0 0 0 chr1 191860890 191860911 -90332753 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 191862012 191862038 -90331626 + AT_rich Low_complexity Low_complexity 1 26 0 551 205 76 57 chr1 191862039 191862249 -90331415 - L1ME3A LINE L1 -1 6169 5956 562 256 48 60 chr1 191862329 191862661 -90331003 - L1MC5 LINE L1 -430 7531 7204 681 291 21 42 chr1 191862691 191863028 -90330636 - HAL1b LINE L1 -708 640 311 41624 42 23 2 chr1 191863030 191869055 -90324609 - L1PA3 LINE L1 0 6155 1 453 281 62 33 chr1 191869056 191869330 -90324334 - HAL1b LINE L1 -1028 320 39 365 269 11 21 chr1 191870287 191870380 -90323284 - MIR SINE MIR -64 144 53 279 277 12 12 chr1 191870423 191870506 -90323158 + CT-rich Low_complexity Low_complexity 1 83 0 23 0 0 0 chr1 191872030 191872053 -90321611 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chr1 191872590 191872622 -90321042 + (TATG)n Simple_repeat Simple_repeat 1 32 0 641 76 49 14 chr1 191872622 191872766 -90320898 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 2444 227 16 25 chr1 191872888 191873451 -90320213 + MER74B LTR ERVL 58 615 -7 1274 198 52 79 chr1 191874167 191874536 -90319128 - MLT1A2 LTR MaLR -4 370 12 2209 91 22 6 chr1 191875094 191875414 -90318250 + L1MA1 LINE L1 5978 6302 0 383 325 105 0 chr1 191875699 191875813 -90317851 - L2 LINE L2 0 3272 3147 22171 86 18 6 chr1 191876773 191880803 -90312861 - L1PA7 LINE L1 -2 6152 2075 232 366 129 5 chr1 191881127 191881313 -90312351 + L2 LINE L2 2869 3077 -195 43756 40 3 1 chr1 191881332 191886197 -90307467 - L1PA3 LINE L1 0 6155 1275 1468 18 0 0 chr1 191886197 191886368 -90307296 - L1PA2 LINE L1 -2 6153 5983 43756 40 3 1 chr1 191886368 191887638 -90306026 - L1PA3 LINE L1 -4880 1275 9 223 364 136 7 chr1 191887681 191887821 -90305843 + L2 LINE L2 3105 3262 -10 193 300 53 47 chr1 191890570 191890760 -90302904 + L2 LINE L2 2841 3031 -241 253 271 47 65 chr1 191890823 191890930 -90302734 - L2 LINE L2 0 3313 3209 2911 82 17 2 chr1 191890980 191891384 -90302280 + L1PA12 LINE L1 5756 6165 -3 225 259 0 0 chr1 191891546 191891600 -90302064 + Charlie2 DNA MER1_type 269 322 -2460 889 203 105 62 chr1 191891623 191891972 -90301692 + Charlie2 DNA MER1_type 1882 2253 -609 6690 176 29 26 chr1 191891972 191894117 -90299547 + L1PA13 LINE L1 3979 6149 -14 889 203 105 62 chr1 191894117 191894185 -90299479 + Charlie2 DNA MER1_type 2253 2317 -545 1538 301 42 53 chr1 191894187 191894404 -90299260 + L2 LINE L2 2107 2325 -989 2521 111 7 42 chr1 191894404 191894432 -90299232 - L1MA2 LINE L1 0 6304 6277 207 0 0 0 chr1 191894432 191894455 -90299209 + (CA)n Simple_repeat Simple_repeat 2 24 0 2521 111 7 42 chr1 191894455 191894878 -90298786 - L1MA2 LINE L1 -27 6277 5869 1538 301 42 53 chr1 191894878 191895307 -90298357 + L2 LINE L2 2325 2746 -568 1911 196 46 10 chr1 191895315 191895674 -90297990 + MLT2D LTR ERVL 1 377 -37 300 27 0 0 chr1 191895674 191895711 -90297953 + (CA)n Simple_repeat Simple_repeat 2 38 0 1911 196 46 10 chr1 191895711 191895744 -90297920 + MLT2D LTR ERVL 377 407 -7 472 228 116 0 chr1 191895848 191896151 -90297513 - L1M4 LINE L1 -2686 3460 3123 518 256 22 15 chr1 191896230 191896367 -90297297 - MER46C DNA MER2_type -2 336 199 316 43 0 21 chr1 191896375 191896422 -90297242 - MADE1 DNA Mariner 0 80 35 1662 143 35 3 chr1 191896554 191896868 -90296796 - L1MA1 LINE L1 0 6302 5979 362 234 171 0 chr1 191896899 191897010 -90296654 - MER46C DNA MER2_type -200 138 9 4445 230 91 38 chr1 191897172 191898868 -90294796 - L1ME2 LINE L1 -10 6949 5065 6510 16 7 0 chr1 191898868 191899617 -90294047 + L1PA2 LINE L1 5402 6155 0 4445 230 91 38 chr1 191899617 191900410 -90293254 - L1ME2 LINE L1 -1894 5065 4316 992 308 50 31 chr1 191900409 191901647 -90292017 - L1ME2 LINE L1 -4899 1524 134 * 436 358 56 35 chr1 191901655 191901940 -90291724 + L2 LINE L2 2978 3268 -4 548 280 59 32 chr1 191902121 191902307 -90291357 + MIR SINE MIR 17 207 -55 2262 59 0 4 chr1 191902555 191902827 -90290837 - AluY SINE Alu -7 304 34 1112 237 106 76 chr1 191904072 191904730 -90288934 - HAL1 LINE L1 -78 2429 1752 772 211 53 32 chr1 191905381 191905627 -90288037 - HAL1 LINE L1 -760 1747 1497 1217 304 53 9 chr1 191905637 191906319 -90287345 + L2 LINE L2 2596 3312 -1 244 322 12 123 chr1 191906433 191906604 -90287060 + L2 LINE L2 2660 2811 -503 189 0 0 0 chr1 191906669 191906690 -90286974 + (TC)n Simple_repeat Simple_repeat 2 22 0 360 325 83 38 chr1 191906935 191907249 -90286415 + L2 LINE L2 2968 3295 -18 357 299 88 111 chr1 191909701 191909936 -90283728 - L3 LINE CR1 -503 1074 852 2228 122 0 0 chr1 191909936 191910246 -90283418 - AluSg SINE Alu 0 310 3 357 299 88 111 chr1 191910246 191910476 -90283188 - L3 LINE CR1 -725 852 618 1541 200 49 59 chr1 191910509 191910980 -90282684 - MER31B LTR ERV1 0 466 1 288 161 0 0 chr1 191910980 191911036 -90282628 - MER31B-int LTR ERV1 -20 4916 4861 355 263 35 29 chr1 191911038 191911222 -90282442 - MER89-int LTR ERV1 -1558 5243 2751 444 147 0 0 chr1 191911781 191911856 -90281808 + L1 LINE L1 2660 2734 -3412 * 1015 201 91 0 chr1 191911852 191912106 -90281558 + L1 LINE L1 4653 4929 -1217 562 185 15 7 chr1 191912408 191912543 -90281121 + CT-rich Low_complexity Low_complexity 3 138 0 242 241 0 0 chr1 191912543 191912597 -90281067 + T-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr1 191912808 191912831 -90280833 + AT_rich Low_complexity Low_complexity 1 23 0 364 240 16 16 chr1 191913646 191913767 -90279897 - L1ME3A LINE L1 -206 5964 5844 1965 218 84 50 chr1 191913794 191914127 -90279537 - REP3 LTR ERV -2 560 201 3746 55 8 2 chr1 191914127 191914601 -90279063 + L1PA7 LINE L1 5678 6154 0 1965 218 84 50 chr1 191914601 191914805 -90278859 - REP3 LTR ERV -361 201 5 456 309 76 37 chr1 191914810 191915803 -90277861 - L1ME3A LINE L1 -349 5813 4755 468 324 20 65 chr1 191917054 191917301 -90276363 - MIR SINE MIR -17 245 10 1750 174 0 32 chr1 191917833 191918143 -90275521 + AluJo SINE Alu 1 300 -12 1008 246 228 57 chr1 191918183 191918642 -90275022 - MLT1F1 LTR MaLR -22 545 23 1787 180 22 11 chr1 191918642 191919003 -90274661 + MLT1A1 LTR MaLR 1 365 0 1008 246 228 57 chr1 191919003 191919031 -90274633 - MLT1F1 LTR MaLR -544 23 1 389 232 27 0 chr1 191919164 191919276 -90274388 - LTR33 LTR ERVL -6 515 401 827 216 91 10 chr1 191919429 191919628 -90274036 - LTR33 LTR ERVL -306 215 1 265 389 74 16 chr1 191919668 191919912 -90273752 + L3b LINE CR1 1314 1571 -12 2002 73 0 12 chr1 191922423 191922682 -90270982 - AluY SINE Alu -5 306 51 510 320 23 58 chr1 191922905 191923214 -90270450 - MLT1I LTR MaLR 0 409 112 421 336 7 14 chr1 191923734 191923874 -90269790 + L2 LINE L2 3174 3312 -1 190 321 37 0 chr1 191923914 191923995 -90269669 + MIR SINE MIR 48 131 -131 183 80 0 0 chr1 191924431 191924456 -90269208 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 737 295 32 0 chr1 191924653 191924870 -90268794 - MIR SINE MIR -35 227 4 394 301 61 50 chr1 191925375 191925602 -90268062 + MIR SINE MIR 9 233 -29 205 188 0 0 chr1 191925574 191925606 -90268058 + L2 LINE L2 3210 3241 -31 * 507 279 33 0 chr1 191926028 191926150 -90267514 + MIR SINE MIR 47 172 -90 180 395 116 0 chr1 191926368 191926497 -90267167 - L2 LINE L2 -5 3267 3124 686 252 22 60 chr1 191927034 191927132 -90266532 - MIR SINE MIR -10 252 152 2226 178 59 0 chr1 191927132 191927536 -90266128 + MSTA LTR MaLR 1 428 0 7457 157 80 31 chr1 191927540 191929110 -90264554 + MSTB-int LTR MaLR 5 1651 0 2429 140 68 5 chr1 191929112 191929511 -90264153 + MSTB LTR MaLR 3 426 0 686 252 22 60 chr1 191929511 191929652 -90264012 - MIR SINE MIR -114 148 19 218 152 0 22 chr1 191929660 191929706 -90263958 + CT-rich Low_complexity Low_complexity 4 48 0 197 191 15 88 chr1 191930534 191930602 -90263062 + L2 LINE L2 3183 3245 -68 22 35 0 0 chr1 191930784 191930813 -90262851 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr1 191931586 191931627 -90262037 + AT_rich Low_complexity Low_complexity 1 41 0 236 350 166 9 chr1 191932187 191932404 -90261260 - HAL1 LINE L1 -594 1913 1663 587 286 109 44 chr1 191932410 191932542 -90261122 - HAL1 LINE L1 -898 1609 1487 637 200 32 37 chr1 191932542 191932732 -90260932 - MER53 DNA DNA 0 189 1 587 286 109 44 chr1 191932732 191933194 -90260470 - HAL1 LINE L1 -1020 1487 976 225 0 0 0 chr1 191933701 191933726 -90259938 + (T)n Simple_repeat Simple_repeat 1 25 0 210 255 0 20 chr1 191934185 191934236 -90259428 + L2 LINE L2 3252 3301 -12 360 366 57 1 chr1 191934561 191934701 -90258963 - MIR3 SINE MIR -71 137 12 1770 53 5 0 chr1 191935384 191935592 -90258072 + AluY SINE Alu 87 295 -16 450 356 98 0 chr1 191935761 191935997 -90257667 + MIR SINE MIR 1 259 -3 2116 122 3 7 chr1 191936091 191936425 -90257239 + AluSg SINE Alu 1 310 0 861 268 4 25 chr1 191936852 191937091 -90256573 - MIR SINE MIR -14 248 15 333 47 0 0 chr1 191937137 191937180 -90256484 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2169 120 0 0 chr1 191938133 191938424 -90255240 + AluSx SINE Alu 14 304 -8 664 248 19 6 chr1 191938846 191939007 -90254657 - MER117 DNA MER1_type -5 192 30 315 301 236 0 chr1 191939016 191939139 -90254525 + MIR SINE MIR 22 173 -89 355 209 55 18 chr1 191940256 191940366 -90253298 + L1ME1 LINE L1 6048 6161 -5 2699 32 0 6 chr1 191940408 191940721 -90252943 - AluY SINE Alu 0 311 1 195 100 0 0 chr1 191942517 191942547 -90251117 + (A)n Simple_repeat Simple_repeat 1 30 0 189 333 86 8 chr1 191944073 191944190 -90249474 - L2 LINE L2 -480 2834 2709 245 354 0 0 chr1 191944339 191944421 -90249243 + MER5A DNA MER1_type 7 88 -101 200 329 38 25 chr1 191944360 191944439 -90249225 - MER5A DNA MER1_type -15 174 95 * 6273 91 11 4 chr1 191944661 191946579 -90247085 - L1PA14 LINE L1 -9 6152 4226 5566 199 10 28 chr1 191946590 191947511 -90246153 + L1P LINE L1 2332 3224 -2922 2248 62 0 59 chr1 191947511 191947849 -90245815 + AluY SINE Alu 1 320 0 5566 199 10 28 chr1 191947849 191948278 -90245386 + L1P LINE L1 3224 3659 -2487 207 344 21 21 chr1 191948281 191948377 -90245287 + L2 LINE L2 2738 2833 -481 22 0 0 0 chr1 191948459 191948481 -90245183 + AT_rich Low_complexity Low_complexity 1 22 0 420 328 84 59 chr1 191948496 191948734 -90244930 + L2 LINE L2 3019 3262 -10 2373 79 3 13 chr1 191949035 191949340 -90244324 - AluSp SINE Alu -11 302 1 1272 249 88 29 chr1 191950486 191950507 -90243157 - L2 LINE L2 0 3313 3295 1949 114 44 4 chr1 191950507 191950803 -90242861 - AluSx SINE Alu 0 309 3 1272 249 88 29 chr1 191950803 191951426 -90242238 - L2 LINE L2 -18 3295 2628 550 285 161 5 chr1 191951428 191951621 -90242043 + MER58A DNA MER1_type 1 223 -1 6004 263 85 37 chr1 191951623 191952549 -90241115 - L2 LINE L2 -682 2632 1752 5806 114 32 0 chr1 191952549 191953670 -90239994 - L1PA16 LINE L1 -9 6157 5019 6004 263 85 37 chr1 191953670 191954823 -90238841 - L2 LINE L2 -1562 1752 454 472 329 137 7 chr1 191955104 191955411 -90238253 - L2 LINE L2 -571 2743 2397 3701 107 4 20 chr1 191956926 191957487 -90236177 + MER41A LTR ERV1 3 554 0 258 163 116 35 chr1 191958077 191958163 -90235501 - L1MA9 LINE L1 -33 6279 6187 538 323 53 11 chr1 191958328 191958517 -90235147 - MIR SINE MIR -48 214 18 25 0 0 0 chr1 191958562 191958587 -90235077 + AT_rich Low_complexity Low_complexity 1 25 0 19554 169 20 18 chr1 191958788 191958815 -90234849 - L1PA11 LINE L1 0 7612 7587 3962 129 26 17 chr1 191958815 191959513 -90234151 - L1MA4A LINE L1 -7 6296 5593 19554 169 20 18 chr1 191959513 191960193 -90233471 - L1PA11 LINE L1 -25 7587 6910 1927 175 0 0 chr1 191960193 191960484 -90233180 - AluJb SINE Alu -21 291 1 19554 169 20 18 chr1 191960484 191961993 -90231671 - L1PA11 LINE L1 -702 6910 5406 225 0 0 0 chr1 191961993 191962018 -90231646 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1922 158 0 0 chr1 191962019 191962297 -90231367 - AluSx SINE Alu -34 278 1 19554 169 20 18 chr1 191962297 191966858 -90226806 - L1PA11 LINE L1 -2205 5407 6 9873 164 32 40 chr1 191966867 191969447 -90224217 - L1MA4A LINE L1 -692 5608 3055 330 26 0 0 chr1 191970038 191970077 -90223587 + (CA)n Simple_repeat Simple_repeat 2 40 0 637 277 151 5 chr1 191970313 191970519 -90223145 - MIR SINE MIR -26 236 1 300 231 104 108 chr1 191971509 191971662 -90222002 - L2 LINE L2 -1 3312 3159 2023 134 34 0 chr1 191971662 191971953 -90221711 - AluSg SINE Alu -9 301 1 300 231 104 108 chr1 191971953 191972011 -90221653 - L2 LINE L2 -154 3159 3102 345 278 11 11 chr1 191972220 191972310 -90221354 + L2 LINE L2 3183 3272 0 414 200 48 0 chr1 191972645 191972806 -90220858 + L1MA9 LINE L1 6026 6290 -22 532 264 278 12 chr1 191973408 191973662 -90220002 + L2 LINE L2 2887 3072 -241 3594 139 37 25 chr1 191973662 191974307 -90219357 - MER39B LTR ERV1 0 653 1 532 264 278 12 chr1 191974307 191974386 -90219278 + L2 LINE L2 3072 3309 -4 186 43 0 0 chr1 191974407 191974430 -90219234 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 1405 195 92 50 chr1 191975803 191976183 -90217481 - MSTD LTR MaLR 0 396 1 2425 89 0 3 chr1 191977127 191977440 -90216224 - AluSx SINE Alu 0 312 1 271 364 16 0 chr1 191977759 191977888 -90215776 + MIR SINE MIR 120 250 -12 250 278 148 19 chr1 191979534 191979642 -90214022 - L3b LINE CR1 -180 1403 1282 210 150 0 0 chr1 191980030 191980070 -90213594 + (CAT)n Simple_repeat Simple_repeat 3 42 0 209 250 0 26 chr1 191980071 191980229 -90213435 + CT-rich Low_complexity Low_complexity 1 153 0 2318 100 8 30 chr1 191980661 191981031 -90212633 + THE1C LTR MaLR 1 362 -13 9884 114 37 42 chr1 191981056 191982643 -90211021 + THE1C-int LTR MaLR 1 1580 0 2391 115 16 19 chr1 191982644 191983018 -90210646 + THE1C LTR MaLR 3 375 0 1938 147 3 27 chr1 191983030 191983329 -90210335 - AluSx SINE Alu -20 292 1 33 25 0 0 chr1 191983405 191983445 -90210219 + AT_rich Low_complexity Low_complexity 1 40 0 663 285 114 79 chr1 191983580 191984089 -90209575 - MLT1L LTR MaLR -88 527 1 438 20 0 0 chr1 191984596 191984647 -90209017 + (ATG)n Simple_repeat Simple_repeat 1 51 0 626 260 57 11 chr1 191984656 191984833 -90208831 - MIR SINE MIR -21 241 57 326 291 22 4 chr1 191985758 191985859 -90207805 - MIR SINE MIR -103 105 1 410 256 24 32 chr1 191986735 191986860 -90206804 - MIR3 SINE MIR -3 205 82 391 303 56 14 chr1 192037473 192037615 -90156049 + MIR SINE MIR 100 247 -15 * 784 281 55 9 chr1 192037609 192037826 -90155838 - MIR SINE MIR -2 260 34 1238 102 17 0 chr1 192038597 192038774 -90154890 + AluSq SINE Alu 134 313 0 405 278 43 14 chr1 192038795 192038935 -90154729 + LTR33 LTR ERVL 76 199 -324 1357 229 202 7 chr1 192039339 192039750 -90153914 - L2 LINE L2 0 3313 2823 1097 236 40 10 chr1 192040710 192041108 -90152556 - MER69B DNA AcHobo -88 1138 729 279 0 0 0 chr1 192041403 192041434 -90152230 + (CA)n Simple_repeat Simple_repeat 2 32 0 683 228 82 4 chr1 192041925 192042180 -90151484 - Charlie2 DNA MER1_type -14 2848 2574 4067 26 0 0 chr1 192042182 192042681 -90150983 + L1P LINE L1 4036 4534 -1612 212 355 0 0 chr1 192043137 192043199 -90150465 + MIR SINE MIR 23 84 -124 215 250 133 23 chr1 192044032 192044131 -90149533 + L2 LINE L2 1562 1679 -1635 300 27 0 0 chr1 192044131 192044168 -90149496 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 250 133 23 chr1 192044168 192044196 -90149468 + L2 LINE L2 1679 1703 -1611 1934 155 26 31 chr1 192044206 192044592 -90149072 - MLT1B LTR MaLR -6 384 1 3820 275 97 9 chr1 192044609 192045943 -90147721 + L2 LINE L2 1698 3146 -167 1330 137 15 27 chr1 192045943 192046214 -90147450 - L1MA3 LINE L1 -37 6263 5997 2439 221 50 44 chr1 192046232 192047034 -90146630 - THE1C-int LTR MaLR -772 808 2 2525 123 3 0 chr1 192047035 192047409 -90146255 - THE1C LTR MaLR 0 375 1 4505 132 25 2 chr1 192047409 192047628 -90146036 - L1MA3 LINE L1 -288 6017 5805 203 23 91 0 chr1 192047628 192047672 -90145992 + (TA)n Simple_repeat Simple_repeat 1 48 0 4505 132 25 2 chr1 192047672 192048414 -90145250 - L1MA3 LINE L1 -500 5805 5034 3956 174 14 1 chr1 192048415 192049104 -90144560 - L1M1 LINE L1 -6855 710 13 1756 193 32 6 chr1 192049311 192049658 -90144006 + MLT1A1 LTR MaLR 1 356 -9 232 396 42 17 chr1 192049904 192050144 -90143520 + L2 LINE L2 2808 3053 -219 1985 100 50 43 chr1 192050871 192051171 -90142493 + AluSp SINE Alu 1 302 -11 200 261 0 0 chr1 192051405 192051451 -90142213 - L2 LINE L2 -11 3261 3216 280 362 46 20 chr1 192051543 192051695 -90141969 - L2 LINE L2 -15 3257 3102 260 372 50 77 chr1 192054795 192055158 -90138506 + L2 LINE L2 2846 3198 -74 394 135 125 10 chr1 192055581 192055685 -90137979 + LTR33 LTR ERVL 402 517 -4 344 259 135 21 chr1 192056006 192056147 -90137517 + MIR SINE MIR 58 204 -58 1903 177 24 19 chr1 192056537 192056910 -90136754 + THE1C LTR MaLR 1 375 0 221 234 21 0 chr1 192057101 192057148 -90136516 - L2 LINE L2 -16 3297 3250 386 233 12 0 chr1 192057265 192057351 -90136313 + L2 LINE L2 3227 3313 0 323 286 201 0 chr1 192058170 192058324 -90135340 - MIR3 SINE MIR -7 201 17 1870 135 12 9 chr1 192059131 192059465 -90134199 + L1MA4A LINE L1 5969 6303 0 25763 32 2 0 chr1 192059496 192063547 -90130117 + L1PA3 LINE L1 2089 6145 -10 424 224 24 0 chr1 192063569 192063694 -90129970 - Charlie2 DNA MER1_type -295 2567 2440 341 251 105 18 chr1 192063805 192063976 -90129688 - Charlie2 DNA MER1_type -453 2409 2224 * 865 245 221 17 chr1 192063968 192064266 -90129398 - Charlie2 DNA MER1_type -2497 365 7 529 143 0 0 chr1 192064542 192064640 -90129024 - L1MA7 LINE L1 -5 6286 6189 310 255 29 10 chr1 192065297 192065399 -90128265 + GA-rich Low_complexity Low_complexity 1 104 0 878 288 171 29 chr1 192067691 192068281 -90125383 + L2 LINE L2 2622 3313 0 584 261 37 94 chr1 192068736 192068981 -90124683 + MIR SINE MIR 20 250 -12 411 294 147 38 chr1 192068990 192069228 -90124436 + MLT1L LTR MaLR 1 264 -351 24 0 0 0 chr1 192069314 192069338 -90124326 + AT_rich Low_complexity Low_complexity 1 24 0 1635 170 29 0 chr1 192069387 192069663 -90124001 - AluJb SINE Alu -26 286 3 4636 120 55 11 chr1 192069673 192070480 -90123184 - L1MA5 LINE L1 -2 6298 5457 252 284 14 14 chr1 192070539 192070613 -90123051 + MLT1J LTR MaLR 243 316 -195 5634 138 24 11 chr1 192071330 192072921 -90120743 + L1MA8 LINE L1 4644 6259 -32 1888 134 88 0 chr1 192072921 192073241 -90120423 + MER7A DNA MER2_type 1 346 0 5634 138 24 11 chr1 192073241 192073275 -90120389 + L1MA8 LINE L1 6259 6291 0 515 300 150 26 chr1 192073311 192073538 -90120126 - MIR SINE MIR 0 262 8 1841 190 66 30 chr1 192075035 192075461 -90118203 + MLT1C LTR MaLR 21 461 -6 349 275 28 0 chr1 192075467 192075576 -90118088 + CT-rich Low_complexity Low_complexity 5 116 0 1450 240 71 35 chr1 192075765 192076222 -90117442 + MLT1G1 LTR MaLR 3 434 -108 4277 116 145 22 chr1 192076222 192076954 -90116710 - LTR12 LTR ERV1 0 826 5 1962 192 35 63 chr1 192076969 192077589 -90116075 - pTR5 LTR ERV1 -1093 1345 743 431 148 0 37 chr1 192077616 192077697 -90115967 + MLT1G1 LTR MaLR 477 554 -1 187 358 122 81 chr1 192078082 192078417 -90115247 + L2 LINE L2 2812 3160 -112 256 282 26 0 chr1 192078494 192078572 -90115092 + (TCCA)n Simple_repeat Simple_repeat 4 83 0 2287 86 3 0 chr1 192078715 192079006 -90114658 - AluY SINE Alu -19 292 1 342 309 124 52 chr1 192079046 192079256 -90114408 - MIR SINE MIR -35 227 3 1648 88 35 0 chr1 192081164 192081392 -90112272 - AluY SINE Alu -2 309 74 2530 50 0 0 chr1 192081392 192081694 -90111970 - AluY SINE Alu -8 303 1 1538 203 3 17 chr1 192081705 192081996 -90111668 - AluJo SINE Alu -25 287 1 263 347 93 21 chr1 192082916 192083109 -90110555 + L2 LINE L2 2249 2455 -859 706 56 0 0 chr1 192083113 192083203 -90110461 - AluY SINE Alu -5 306 217 432 246 14 56 chr1 192083265 192083407 -90110257 + L2 LINE L2 2531 2666 -648 2353 92 0 0 chr1 192083435 192083741 -90109923 - AluY SINE Alu -5 306 1 1087 275 149 10 chr1 192084035 192084646 -90109018 - HAL1 LINE L1 -712 1795 1100 251 273 125 6 chr1 192085375 192085489 -90108175 - MIR SINE MIR -65 143 15 332 309 85 11 chr1 192085531 192085625 -90108039 + MIR SINE MIR 2 102 -160 870 261 99 22 chr1 192085666 192085988 -90107676 + LTR33 LTR ERVL 24 370 -151 366 281 8 16 chr1 192086088 192086209 -90107455 + LTR33 LTR ERVL 391 510 -11 562 259 50 0 chr1 192086228 192086367 -90107297 + MIR SINE MIR 117 262 0 1183 43 0 19 chr1 192086374 192086536 -90107128 - L1PA5 LINE L1 -912 5234 5076 7025 55 7 1 chr1 192086537 192087450 -90106214 + L1PA5 LINE L1 5231 6148 -6 387 0 0 0 chr1 192087754 192087797 -90105867 + (CA)n Simple_repeat Simple_repeat 1 43 0 322 102 0 0 chr1 192088720 192088769 -90104895 - Alu SINE Alu -1 299 251 770 229 65 69 chr1 192088912 192089157 -90104507 - MIR SINE MIR -1 261 18 187 115 0 0 chr1 192090371 192090397 -90103267 - MIR3 SINE MIR -25 183 158 3279 203 26 73 chr1 192090408 192091078 -90102586 - L1MC3 LINE L1 -169 7616 7002 2242 118 32 3 chr1 192091078 192091426 -90102238 + MER46B DNA MER2_type 1 233 -3 3279 203 26 73 chr1 192091426 192091694 -90101970 - L1MC3 LINE L1 -783 7002 6723 357 298 41 70 chr1 192091694 192091865 -90101799 - MIR3 SINE MIR -41 167 2 846 265 187 33 chr1 192092792 192093241 -90100423 - LTR33 LTR ERVL -3 518 1 284 315 45 9 chr1 192093332 192093443 -90100221 - L2 LINE L2 0 3272 3158 489 169 11 11 chr1 192093789 192093878 -90099786 + L2 LINE L2 3225 3313 0 679 329 98 11 chr1 192095156 192095442 -90098222 + MLT1J1 LTR MaLR 11 321 -125 760 200 0 0 chr1 192095801 192095941 -90097723 - MER82 DNA MER2_type -354 299 160 180 0 0 0 chr1 192096389 192096409 -90097255 + (A)n Simple_repeat Simple_repeat 1 20 0 358 266 266 6 chr1 192097381 192097554 -90096110 - MIR SINE MIR -4 258 41 1264 311 73 42 chr1 192097832 192099368 -90094296 + L1ME3 LINE L1 4 1635 -4675 403 330 53 21 chr1 192099663 192099692 -90093972 + L1ME3 LINE L1 5202 5229 -916 1095 270 75 13 chr1 192099692 192100077 -90093587 - MLT1I LTR MaLR 0 409 1 403 330 53 21 chr1 192100077 192100664 -90093000 + L1ME3 LINE L1 5229 5845 -300 250 211 47 70 chr1 192100943 192101071 -90092593 + L1MC4 LINE L1 7918 8042 0 1818 187 13 7 chr1 192101584 192101889 -90091775 + Tigger5 DNA MER2_type 1 307 -2016 1450 131 0 5 chr1 192101885 192102107 -90091557 + Tigger5 DNA MER2_type 2103 2323 0 * 496 302 119 71 chr1 192102181 192102778 -90090886 + L1MDa LINE L1 1291 1904 -1078 540 45 0 0 chr1 192102778 192102845 -90090819 + (TA)n Simple_repeat Simple_repeat 2 68 0 496 302 119 71 chr1 192102845 192102967 -90090697 + L1MDa LINE L1 1904 2019 -963 214 282 0 51 chr1 192103641 192103719 -90089945 - MIR3 SINE MIR -13 195 122 405 342 36 26 chr1 192103788 192103981 -90089683 + MIR SINE MIR 10 204 -58 2423 209 35 7 chr1 192103998 192104592 -90089072 - L1M4 LINE L1 -1728 4418 3808 36 40 0 0 chr1 192104703 192104753 -90088911 + AT_rich Low_complexity Low_complexity 1 50 0 1823 158 27 3 chr1 192104863 192105155 -90088509 - AluSx SINE Alu -13 299 1 335 345 118 9 chr1 192105307 192105527 -90088137 + MIR SINE MIR 16 259 -3 389 328 64 18 chr1 192105940 192106111 -90087553 - MIR SINE MIR -56 206 28 538 298 73 19 chr1 192106650 192106855 -90086809 - MIR SINE MIR -44 218 3 2091 279 57 64 chr1 192107125 192107798 -90085866 + MER45C DNA AcHobo 1 668 -285 1930 203 36 29 chr1 192107839 192108362 -90085302 - L1M4 LINE L1 -1656 4490 3964 1248 207 45 10 chr1 192108431 192108745 -90084919 + MER45B DNA AcHobo 716 1040 0 21 36 0 0 chr1 192109237 192109265 -90084399 + AT_rich Low_complexity Low_complexity 1 28 0 1248 128 26 13 chr1 192109964 192110198 -90083466 - L1MA4 LINE L1 -16 6284 6048 195 356 45 0 chr1 192110525 192110657 -90083007 + MIR SINE MIR 125 262 0 270 292 0 11 chr1 192110668 192110757 -90082907 + A-rich Low_complexity Low_complexity 4 91 0 1469 206 136 29 chr1 192110802 192111215 -90082449 + MSTB2 LTR MaLR 1 457 0 271 303 179 19 chr1 192112875 192113037 -90080627 + MIR SINE MIR 49 236 -26 2233 117 3 0 chr1 192113267 192113574 -90080090 + AluSq SINE Alu 1 308 -5 220 351 61 34 chr1 192115464 192115612 -90078052 - L2 LINE L2 -222 3050 2899 575 279 15 45 chr1 192116892 192117093 -90076571 - MIR SINE MIR -34 228 34 204 330 11 0 chr1 192118375 192118463 -90075201 - MIR SINE MIR -1 261 173 337 239 33 11 chr1 192119005 192119097 -90074567 + L2 LINE L2 3208 3301 -12 230 190 139 51 chr1 192119187 192119266 -90074398 + L1ME4a LINE L1 5533 5618 -503 637 238 30 121 chr1 192119266 192119598 -90074066 + MLT1J LTR MaLR 1 302 -209 914 281 144 16 chr1 192120315 192120935 -90072729 + L2 LINE L2 2618 3313 0 184 138 0 0 chr1 192121227 192121256 -90072408 - MIR SINE MIR -60 148 120 275 250 109 39 chr1 192121876 192122004 -90071660 + MIR3 SINE MIR 8 144 -64 244 111 0 0 chr1 192122004 192122040 -90071624 + L1MA8 LINE L1 6092 6127 -164 1070 123 43 0 chr1 192122096 192122283 -90071381 + L1MA8 LINE L1 6092 6286 -5 515 223 49 16 chr1 192122310 192122464 -90071200 - MIR SINE MIR 0 262 106 186 229 0 0 chr1 192122502 192122537 -90071127 + MIR SINE MIR 222 256 -6 405 277 123 0 chr1 192122704 192122834 -90070830 + MIR SINE MIR 90 235 -27 418 330 22 6 chr1 192122976 192123158 -90070506 + MER5A DNA MER1_type 4 188 -1 554 283 6 0 chr1 192124301 192124467 -90069197 + MIR SINE MIR 95 261 -1 524 288 52 15 chr1 192125733 192126004 -90067660 + L1ME4a LINE L1 5637 5917 -204 1785 104 0 16 chr1 192126723 192126994 -90066670 - AluSc SINE Alu 0 303 37 681 238 127 104 chr1 192127023 192127237 -90066427 + L1ME4a LINE L1 5508 5716 -405 5957 189 10 22 chr1 192127237 192129083 -90064581 - L1PA15 LINE L1 -4 6161 4328 2197 95 0 3 chr1 192129083 192129392 -90064272 + AluSq SINE Alu 2 309 0 5957 189 10 22 chr1 192129392 192129629 -90064035 - L1PA15 LINE L1 -1837 4328 4090 681 238 127 104 chr1 192129629 192130012 -90063652 + L1ME4a LINE L1 5716 6119 -2 315 238 143 0 chr1 192130154 192130238 -90063426 - MIR SINE MIR -10 252 157 216 0 0 0 chr1 192131274 192131298 -90062366 + (A)n Simple_repeat Simple_repeat 1 24 0 518 287 55 17 chr1 192133134 192133315 -90060349 - MIR SINE MIR -55 207 20 796 296 107 43 chr1 192133563 192134023 -90059641 - LTR16C LTR ERVL -2 489 1 578 289 16 21 chr1 192134100 192134290 -90059374 - MER5A DNA MER1_type 0 189 1 409 288 80 8 chr1 192134349 192134474 -90059190 + MIR SINE MIR 16 149 -113 195 273 61 15 chr1 192135335 192135401 -90058263 - L3b LINE CR1 -219 1364 1296 181 358 9 37 chr1 192135790 192135899 -90057765 + MIR3 SINE MIR 82 187 -21 2692 227 67 24 chr1 192135945 192136571 -90057093 + MER82 DNA MER2_type 1 653 0 186 277 134 25 chr1 192136681 192136800 -90056864 - MIR SINE MIR -91 171 40 21 0 0 0 chr1 192137187 192137208 -90056456 + AT_rich Low_complexity Low_complexity 1 21 0 553 256 77 6 chr1 192137367 192137523 -90056141 - MIR SINE MIR -48 214 48 2182 143 49 54 chr1 192139234 192139253 -90054411 + MSTA LTR MaLR 1 19 -409 538 125 0 0 chr1 192139253 192139333 -90054331 - MADE1 DNA Mariner 0 80 1 2182 143 49 54 chr1 192139333 192139741 -90053923 + MSTA LTR MaLR 19 426 -2 215 31 31 0 chr1 192140071 192140103 -90053561 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 723 188 0 0 chr1 192140188 192140321 -90053343 - FLAM_A SINE Alu 0 133 1 507 126 21 0 chr1 192141084 192141179 -90052485 - MER114 LTR ERV -77 571 475 224 371 19 29 chr1 192141637 192141742 -90051922 - MIR3 SINE MIR -54 154 51 188 33 0 33 chr1 192142769 192142799 -90050865 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 557 253 99 32 chr1 192143167 192143511 -90050153 + L1ME4a LINE L1 5483 5849 -272 220 218 0 36 chr1 192143878 192143933 -90049731 + GA-rich Low_complexity Low_complexity 3 55 0 189 390 85 0 chr1 192144577 192144659 -90049005 - L2 LINE L2 -30 3242 3154 269 282 0 71 chr1 192145108 192145193 -90048471 - MER115 DNA AcHobo -613 80 2 22 0 0 0 chr1 192146312 192146334 -90047330 + AT_rich Low_complexity Low_complexity 1 22 0 345 295 63 0 chr1 192146361 192146456 -90047208 + MIR SINE MIR 89 189 -73 209 289 189 11 chr1 192147418 192147508 -90046156 - L3 LINE CR1 -74 1503 1398 22 0 0 0 chr1 192148339 192148361 -90045303 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr1 192148816 192148853 -90044811 + AT_rich Low_complexity Low_complexity 1 37 0 305 278 55 25 chr1 192149075 192149363 -90044301 + L1ME LINE L1 5123 5424 -742 291 301 78 0 chr1 192149397 192149500 -90044164 + L1ME LINE L1 5508 5618 -503 21 57 0 0 chr1 192149721 192149756 -90043908 + AT_rich Low_complexity Low_complexity 1 35 0 492 114 0 0 chr1 192150438 192150508 -90043156 + AluS SINE Alu 225 294 -15 365 292 42 0 chr1 192152546 192152666 -90040998 + L2 LINE L2 3189 3313 0 441 54 0 0 chr1 192152694 192152750 -90040914 + (TG)n Simple_repeat Simple_repeat 2 57 0 340 241 37 28 chr1 192154194 192154302 -90039362 - MIR SINE MIR -46 216 108 249 290 0 0 chr1 192154731 192154793 -90038871 + GA-rich Low_complexity Low_complexity 1 62 0 544 315 49 69 chr1 192155807 192156382 -90037282 - L2 LINE L2 -10 3303 2746 200 357 14 0 chr1 192157432 192157502 -90036162 - L2 LINE L2 -9 3263 3193 23 0 0 0 chr1 192157624 192157647 -90036017 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 192159797 192159819 -90033845 + AT_rich Low_complexity Low_complexity 1 22 0 1503 238 20 59 chr1 192161406 192161482 -90032182 + L1ME1 LINE L1 5525 5602 -564 2176 121 0 0 chr1 192161482 192161771 -90031893 + AluSx SINE Alu 3 291 -21 1503 238 20 59 chr1 192161771 192162240 -90031424 + L1ME1 LINE L1 5602 6049 -117 288 120 0 0 chr1 192162300 192162350 -90031314 + (TA)n Simple_repeat Simple_repeat 1 50 0 4278 244 50 48 chr1 192162409 192162514 -90031150 + L1ME LINE L1 2944 3047 -3099 1716 182 23 13 chr1 192162514 192162821 -90030843 + AluJo SINE Alu 1 310 -2 4278 244 50 48 chr1 192162821 192163860 -90029804 + L1ME LINE L1 3047 4082 -2064 721 212 71 47 chr1 192163860 192164072 -90029592 - MER20 DNA MER1_type 0 219 3 4278 244 50 48 chr1 192164072 192164737 -90028927 + L1ME LINE L1 4082 4761 -1385 1936 157 0 7 chr1 192164737 192165030 -90028634 + AluJo SINE Alu 1 291 -21 4278 244 50 48 chr1 192165030 192165122 -90028542 + L1ME LINE L1 4761 4851 -1295 186 43 0 0 chr1 192165127 192165150 -90028514 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11239 192 46 41 chr1 192165152 192167688 -90025976 - L1MA4A LINE L1 -12 6993 4470 297 0 0 0 chr1 192167688 192167721 -90025943 + (TG)n Simple_repeat Simple_repeat 2 34 0 11239 192 46 41 chr1 192167721 192169696 -90023968 - L1MA4A LINE L1 -2535 4470 2506 1998 143 0 13 chr1 192169696 192169996 -90023668 + AluSg SINE Alu 1 296 -14 11239 192 46 41 chr1 192169996 192172418 -90021246 - L1MA4A LINE L1 -4499 2506 12 1184 217 75 21 chr1 192172436 192172864 -90020800 + L1ME LINE L1 4855 5305 -841 184 228 70 18 chr1 192173390 192173447 -90020217 + MIR SINE MIR 67 126 -136 182 206 56 103 chr1 192173628 192173735 -90019929 + MIR SINE MIR 53 154 -108 1092 248 84 26 chr1 192174363 192174778 -90018886 + L1ME LINE L1 5323 5761 -405 204 67 0 0 chr1 192174795 192174825 -90018839 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 14645 35 6 0 chr1 192174825 192177362 -90016302 - L1PA4 LINE L1 -11 6144 3594 2249 174 23 35 chr1 192177862 192178293 -90015371 - MSTB LTR MaLR 0 426 1 6508 186 13 27 chr1 192178293 192179646 -90014018 - MSTB-int LTR MaLR 0 1651 319 429 36 0 0 chr1 192179638 192179694 -90013970 - MSTB-int LTR MaLR -1595 56 1 * 990 186 5 5 chr1 192179694 192179887 -90013777 - MSTB LTR MaLR 0 428 236 4434 172 20 22 chr1 192181422 192182136 -90011528 - L1MB3 LINE L1 -2 6181 5463 279 0 0 0 chr1 192182136 192182167 -90011497 + (TG)n Simple_repeat Simple_repeat 2 32 0 4434 172 20 22 chr1 192182167 192182456 -90011208 - L1MB3 LINE L1 -720 5463 5175 * 19478 160 33 18 chr1 192182454 192190055 -90003609 - L1MA1 LINE L1 0 7721 16 204 135 0 0 chr1 192190126 192190163 -90003501 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 4640 130 8 5 chr1 192190164 192191350 -90002314 - L1PA15 LINE L1 -9 6156 5005 3126 206 50 53 chr1 192191350 192191382 -90002282 - L1PA12 LINE L1 -5007 2574 2543 2090 143 3 10 chr1 192191382 192191696 -90001968 + AluJb SINE Alu 1 312 0 3126 206 50 53 chr1 192191696 192192506 -90001158 - L1PA12 LINE L1 -5038 2543 1735 395 329 48 32 chr1 192192512 192192828 -90000836 - L1PA12 LINE L1 -5589 1992 1672 3866 199 43 26 chr1 192192895 192193960 -89999704 - L1MB3 LINE L1 -1037 5109 4027 3700 161 30 21 chr1 192195127 192195362 -89998302 + L1PA15 LINE L1 4556 4787 -1359 1537 191 16 29 chr1 192195362 192195676 -89997988 + AluSx SINE Alu 3 312 0 3700 161 30 21 chr1 192195676 192196208 -89997456 + L1PA15 LINE L1 4787 5330 -816 17721 151 16 81 chr1 192196214 192200323 -89993341 + L1PA8 LINE L1 2 3842 -2304 6524 75 18 1 chr1 192200446 192201807 -89991857 + L1PA8 LINE L1 4788 6159 -13 5234 135 1 8 chr1 192201809 192201977 -89991687 + L1PA15 LINE L1 5315 5483 -682 2060 103 41 0 chr1 192201977 192202267 -89991397 + AluSc SINE Alu 1 302 -7 5234 135 1 8 chr1 192202267 192202955 -89990709 + L1PA15 LINE L1 5483 6165 0 244 302 12 14 chr1 192202960 192203046 -89990618 + MER5A DNA MER1_type 91 185 -4 522 289 121 25 chr1 192203195 192203434 -89990230 - L3b LINE CR1 -199 1384 1123 797 186 21 46 chr1 192203660 192203854 -89989810 - MER5A DNA MER1_type 0 189 1 208 318 125 11 chr1 192203903 192203991 -89989673 - MIR3 SINE MIR -30 178 81 1152 268 21 29 chr1 192204266 192204606 -89989058 - L2 LINE L2 -922 2392 2056 283 348 17 0 chr1 192204624 192204742 -89988922 - L2 LINE L2 -1809 1505 1386 784 303 45 11 chr1 192204757 192205021 -89988643 - L2 LINE L2 -2089 1225 953 408 301 35 18 chr1 192205494 192205607 -89988057 + MIR SINE MIR 31 145 -117 212 361 39 54 chr1 192205622 192205752 -89987912 + L2 LINE L2 3184 3311 -2 2134 195 50 42 chr1 192206005 192206502 -89987162 + MLT1D LTR MaLR 1 501 -4 1649 299 10 17 chr1 192208161 192208760 -89984904 + L1MEc LINE L1 23 617 -5779 892 168 21 26 chr1 192208861 192209052 -89984612 + THE1C LTR MaLR 154 343 -32 237 185 11 22 chr1 192209074 192209166 -89984498 + (TA)n Simple_repeat Simple_repeat 1 91 0 236 368 44 18 chr1 192209522 192209636 -89984028 + L2 LINE L2 2586 2702 -612 190 369 120 47 chr1 192210223 192210497 -89983167 + L2 LINE L2 2923 3216 -56 6454 82 1 23 chr1 192210530 192211430 -89982234 - SVA Other Other -3 1383 504 5330 72 78 12 chr1 192211530 192212333 -89981331 - SVA Other Other -530 856 1 2073 159 104 5 chr1 192212663 192213085 -89980579 - MLT1C LTR MaLR -3 464 1 682 313 153 15 chr1 192213098 192213497 -89980167 + L2 LINE L2 2840 3293 -20 280 273 31 62 chr1 192213683 192213844 -89979820 + L2 LINE L2 3013 3168 -145 11421 173 65 13 chr1 192214011 192214160 -89979504 - L1M4 LINE L1 -3275 3107 2967 2205 181 29 14 chr1 192214160 192214580 -89979084 + MSTB LTR MaLR 1 426 0 11421 173 65 13 chr1 192214580 192215164 -89978500 - L1M4 LINE L1 -3415 2967 2415 1088 273 61 6 chr1 192215164 192215490 -89978174 + MER2 DNA MER2_type 1 344 0 11421 173 65 13 chr1 192215490 192216175 -89977489 - L1M4 LINE L1 -3967 2415 1767 198 0 0 0 chr1 192216175 192216197 -89977467 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 11421 173 65 13 chr1 192216197 192217242 -89976422 - L1M4 LINE L1 -4615 1767 460 2356 78 0 3 chr1 192217242 192217535 -89976129 - AluY SINE Alu -19 292 1 11421 173 65 13 chr1 192217535 192218005 -89975659 - L1M4 LINE L1 -5922 460 16 620 303 25 46 chr1 192218491 192218772 -89974892 + L2 LINE L2 3030 3304 -9 456 321 62 33 chr1 192219065 192219305 -89974359 + MLT1K LTR MaLR 277 523 -65 189 147 0 0 chr1 192219590 192219624 -89974040 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 446 291 86 14 chr1 192219833 192220043 -89973621 - MIR SINE MIR -26 236 12 5569 201 20 33 chr1 192222337 192224461 -89969203 + L1PA16 LINE L1 4077 6165 -1 22 35 0 0 chr1 192224461 192224490 -89969174 + AT_rich Low_complexity Low_complexity 1 29 0 606 219 38 66 chr1 192225732 192225915 -89967749 - L1ME3A LINE L1 -328 5842 5665 1703 199 101 35 chr1 192225928 192226415 -89967249 + Charlie1b DNA MER1_type 5 523 0 664 296 94 26 chr1 192226417 192227319 -89966345 - L1ME3A LINE L1 -536 5626 4657 183 294 44 0 chr1 192227763 192227831 -89965833 + L2 LINE L2 3235 3305 -8 1977 179 17 0 chr1 192227930 192228283 -89965381 + MLT1A1 LTR MaLR 1 359 -6 2593 106 79 7 chr1 192228775 192229182 -89964482 + MLT2A1 LTR ERVL 1 436 -8 241 226 83 36 chr1 192229277 192229361 -89964303 - MER103 DNA DNA -59 107 20 405 280 48 83 chr1 192229907 192230075 -89963589 + MER5A DNA MER1_type 23 184 -5 630 291 13 35 chr1 192230140 192230367 -89963297 - MARNA DNA Mariner -95 491 270 303 381 31 0 chr1 192231052 192231212 -89962452 + MIR SINE MIR 98 262 0 913 118 0 0 chr1 192231528 192231655 -89962009 + AluSq/x SINE Alu 7 133 -179 1260 91 10 72 chr1 192231669 192231878 -89961786 + AluY SINE Alu 100 295 -16 879 217 0 0 chr1 192231881 192232047 -89961617 + AluJo/FRAM SINE Alu 137 302 0 5393 119 2 25 chr1 192232060 192232116 -89961548 + L1PA15 LINE L1 5319 5375 -790 2204 110 10 3 chr1 192232116 192232424 -89961240 + AluSq SINE Alu 3 312 -1 5393 119 2 25 chr1 192232424 192233230 -89960434 + L1PA15 LINE L1 5375 6161 -4 22 35 0 0 chr1 192233695 192233724 -89959940 + AT_rich Low_complexity Low_complexity 1 29 0 2365 159 36 29 chr1 192233849 192234327 -89959337 - MER34C LTR ERV1 0 585 105 692 232 21 0 chr1 192234329 192234471 -89959193 + FRAM SINE Alu 1 145 -31 248 122 24 0 chr1 192234478 192234519 -89959145 - MER34C LTR ERV1 -509 76 35 323 324 38 0 chr1 192234565 192234670 -89958994 - L1MC/D LINE L1 -2266 5542 5434 204 254 0 18 chr1 192234949 192235004 -89958660 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 625 317 103 57 chr1 192235004 192235711 -89957953 + L1M4 LINE L1 4493 5232 -914 280 308 0 23 chr1 192235726 192235856 -89957808 + L1M LINE L1 5255 5381 -2427 278 114 0 0 chr1 192235892 192235936 -89957728 - L1MC4 LINE L1 -235 7807 7764 343 290 32 0 chr1 192237225 192237318 -89956346 - MIR3 SINE MIR -8 200 105 301 235 0 88 chr1 192237644 192237746 -89955918 + L2 LINE L2 3219 3311 -2 2124 113 10 0 chr1 192238080 192238372 -89955292 + AluSx SINE Alu 1 295 -17 244 268 42 0 chr1 192238375 192238446 -89955218 - MIR SINE MIR -109 153 80 213 371 15 64 chr1 192238524 192238726 -89954938 - L2 LINE L2 -76 3196 3005 494 298 71 6 chr1 192240297 192240465 -89953199 - MIR3 SINE MIR -9 199 21 240 330 39 10 chr1 192240465 192240568 -89953096 + MIR SINE MIR 30 135 -73 4629 125 26 11 chr1 192241422 192242148 -89951516 - Ricksha DNA DNA -573 2673 1937 824 110 0 0 chr1 192242151 192242260 -89951404 + AluSq/x SINE Alu 4 112 -200 11121 118 11 31 chr1 192242261 192242932 -89950732 - L1P3 LINE L1 -3654 2807 2124 2498 73 0 6 chr1 192242932 192243245 -89950419 + AluY SINE Alu 1 311 0 11121 118 11 31 chr1 192243245 192245254 -89948410 - L1P3 LINE L1 -4337 2124 174 4712 232 50 11 chr1 192245368 192247514 -89946150 + L1ME1 LINE L1 3941 6312 0 363 214 37 123 chr1 192247911 192248098 -89945566 - MIR SINE MIR -15 247 77 26 30 0 0 chr1 192248122 192248155 -89945509 + AT_rich Low_complexity Low_complexity 1 33 0 303 49 0 0 chr1 192248232 192248273 -89945391 + (CA)n Simple_repeat Simple_repeat 1 41 0 205 366 8 24 chr1 192249105 192249228 -89944436 + L2 LINE L2 2919 3039 -233 1263 224 51 0 chr1 192249685 192249939 -89943725 + Tigger7 DNA MER2_type 1 267 -2220 1133 23 0 0 chr1 192250023 192250154 -89943510 - L1PA5 LINE L1 -8 6146 6016 1394 132 5 0 chr1 192250155 192250360 -89943304 - MER2 DNA MER2_type -139 206 1 471 190 25 0 chr1 192250360 192250439 -89943225 + Tigger7 DNA MER2_type 2405 2485 -2 380 321 212 18 chr1 192250654 192250928 -89942736 - MLT1K LTR MaLR -130 458 132 441 236 84 80 chr1 192252698 192252973 -89940691 - L1ME3A LINE L1 -34 6136 5861 263 146 18 0 chr1 192253548 192253603 -89940061 + CT-rich Low_complexity Low_complexity 3 58 0 24 32 0 0 chr1 192255482 192255513 -89938151 + AT_rich Low_complexity Low_complexity 1 31 0 755 271 57 70 chr1 192255834 192256629 -89937035 + L1ME3A LINE L1 5124 5920 -250 1384 113 0 0 chr1 192256761 192256955 -89936709 - L1P3 LINE L1 -6267 194 1 808 260 62 62 chr1 192256953 192257610 -89936054 - L1MEd LINE L1 -4864 1341 790 * 309 355 35 14 chr1 192260929 192261070 -89932594 - MER5A DNA MER1_type -6 183 40 * 321 326 30 23 chr1 192260944 192261076 -89932588 + MER5A DNA MER1_type 35 167 -22 271 238 0 25 chr1 192261082 192261162 -89932502 - MIR SINE MIR -104 158 81 598 292 99 6 chr1 192261903 192262074 -89931590 + MIR SINE MIR 3 189 -73 34556 57 25 3 chr1 192262310 192268280 -89925384 + L1PA4 LINE L1 9 6155 0 194 295 49 16 chr1 192268368 192268429 -89925235 + L2 LINE L2 3197 3259 -54 252 130 43 29 chr1 192268931 192269000 -89924664 + GA-rich Low_complexity Low_complexity 4 73 0 428 289 69 29 chr1 192269211 192269384 -89924280 + MIR SINE MIR 4 183 -79 3353 255 60 28 chr1 192269662 192271996 -89921668 + L1ME2 LINE L1 963 3331 -2884 2399 250 21 60 chr1 192272015 192273109 -89920555 + L1ME2 LINE L1 5194 6403 0 22 0 0 0 chr1 192273310 192273332 -89920332 + AT_rich Low_complexity Low_complexity 1 22 0 295 103 0 0 chr1 192273653 192273692 -89919972 + Alu SINE Alu 3 41 -259 9320 200 17 7 chr1 192273697 192275667 -89917997 - L1P LINE L1 -897 5249 3261 4734 233 21 25 chr1 192275661 192277204 -89916460 - L1PA13 LINE L1 -4520 2267 180 * 1988 126 3 20 chr1 192279541 192279835 -89913829 - AluSx SINE Alu -23 289 1 729 278 144 35 chr1 192280890 192281722 -89911942 + L1MEc LINE L1 1601 2523 -3873 863 148 13 58 chr1 192281844 192281999 -89911665 + AluJo SINE Alu 108 255 -57 183 36 73 36 chr1 192282008 192282063 -89911601 + (TA)n Simple_repeat Simple_repeat 1 57 0 2145 89 85 0 chr1 192282158 192282440 -89911224 + AluSc SINE Alu 1 306 -3 1043 226 106 48 chr1 192282444 192282842 -89910822 + LTR8A LTR ERV1 307 727 0 908 194 93 76 chr1 192282852 192283208 -89910456 - MER34C LTR ERV1 -179 406 45 521 269 11 6 chr1 192283396 192283571 -89910093 - L1ME3A LINE L1 -261 5909 5734 678 275 136 13 chr1 192283574 192283810 -89909854 - LTR16A LTR ERVL -133 317 53 293 114 0 23 chr1 192284084 192284128 -89909536 + Alu SINE Alu 1 43 -259 260 139 0 0 chr1 192284125 192284161 -89909503 + Alu SINE Alu 5 40 -262 * 2133 111 0 26 chr1 192284162 192284469 -89909195 + AluSq SINE Alu 5 303 -10 1434 189 93 6 chr1 192285001 192285313 -89908351 - MER2 DNA MER2_type -5 340 2 980 234 17 9 chr1 192285496 192285727 -89907937 - L1PB4 LINE L1 -3 6153 5921 1738 184 28 48 chr1 192285770 192286167 -89907497 + MLT1B LTR MaLR 2 390 0 835 100 0 0 chr1 192286306 192286442 -89907222 + AluSp/q SINE Alu 176 311 0 11360 82 11 6 chr1 192286504 192288865 -89904799 - L1PA7 LINE L1 0 6154 3791 2370 98 0 0 chr1 192290086 192290392 -89903272 - AluSc SINE Alu -3 306 1 18472 84 7 1 chr1 192291836 192295245 -89898419 - L1PA8 LINE L1 -1 6171 2786 25 0 0 0 chr1 192295629 192295654 -89898010 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 192295682 192295712 -89897952 + AT_rich Low_complexity Low_complexity 1 30 0 3551 148 54 3 chr1 192295712 192296355 -89897309 - L1MA5 LINE L1 -6 6294 5619 1427 156 42 0 chr1 192296355 192296618 -89897046 + L1MA5 LINE L1 5356 5629 -671 237 250 0 0 chr1 192296694 192296731 -89896933 + (CA)n Simple_repeat Simple_repeat 2 41 -8 2031 171 21 0 chr1 192296731 192297071 -89896593 - MER7A DNA MER2_type 0 346 2 237 250 0 0 chr1 192297071 192297081 -89896583 + (CA)n Simple_repeat Simple_repeat 40 49 0 239 167 42 0 chr1 192297393 192297441 -89896223 + L2 LINE L2 3263 3312 -1 793 256 20 5 chr1 192298346 192298545 -89895119 + MLT1A2 LTR MaLR 173 374 0 1462 176 10 3 chr1 192298781 192299071 -89894593 + L1ME1 LINE L1 5275 5566 -2476 300 228 0 0 chr1 192299056 192299113 -89894551 + L1ME1 LINE L1 5940 5996 -170 * 1728 257 50 33 chr1 192299241 192299720 -89893944 + LTR33 LTR ERVL 1 487 -34 21 0 0 0 chr1 192300002 192300023 -89893641 + AT_rich Low_complexity Low_complexity 1 21 0 275 247 0 0 chr1 192300133 192300226 -89893438 + L1MC4 LINE L1 6609 6701 -1341 213 121 0 0 chr1 192300227 192300260 -89893404 + (TA)n Simple_repeat Simple_repeat 1 33 0 305 244 0 24 chr1 192300471 192300553 -89893111 - L1MC4 LINE L1 -1339 6703 6624 2390 57 10 13 chr1 192300919 192301219 -89892445 + AluY SINE Alu 1 299 -12 620 207 171 0 chr1 192301219 192301383 -89892281 + MIR SINE MIR 9 200 -62 29 28 0 0 chr1 192301400 192301436 -89892228 + AT_rich Low_complexity Low_complexity 1 36 0 271 235 66 63 chr1 192301827 192301995 -89891669 - MER63A DNA MER1_type 0 210 1 23 0 0 0 chr1 192302450 192302473 -89891191 + AT_rich Low_complexity Low_complexity 1 23 0 304 342 0 18 chr1 192303713 192303831 -89889833 + MIR SINE MIR 16 132 -76 282 197 53 53 chr1 192304346 192304422 -89889242 + L3b LINE CR1 1109 1184 -399 310 280 28 9 chr1 192305112 192305219 -89888445 + MER103 DNA DNA 55 163 -3 188 303 13 26 chr1 192305252 192305328 -89888336 + L2 LINE L2 3198 3272 0 460 251 74 18 chr1 192305454 192305617 -89888047 + MER69A DNA AcHobo 1 172 -5 1921 129 38 0 chr1 192305844 192306131 -89887533 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 192306529 192306552 -89887112 + AT_rich Low_complexity Low_complexity 1 23 0 211 226 119 12 chr1 192307520 192307604 -89886060 - L2 LINE L2 0 3313 3221 552 230 37 99 chr1 192308230 192308391 -89885273 + MIR SINE MIR 6 156 -106 1030 281 65 34 chr1 192308405 192308821 -89884843 + L1MEc LINE L1 36 464 -5932 1241 201 25 81 chr1 192308827 192309227 -89884437 + MLT1A1 LTR MaLR 2 457 0 2491 223 39 48 chr1 192309249 192310118 -89883546 + L1MEc LINE L1 516 1376 -5020 592 155 8 16 chr1 192310121 192310250 -89883414 + GA-rich Low_complexity Low_complexity 2 129 0 2004 240 74 36 chr1 192310254 192310972 -89882692 + L1MEc LINE L1 1394 2138 -4258 924 235 45 27 chr1 192310976 192311308 -89882356 + L1MEc LINE L1 2347 2684 -3531 2075 74 19 0 chr1 192311317 192311573 -89882091 + AluSp SINE Alu 39 299 -14 1832 244 26 11 chr1 192311576 192312196 -89881468 + L1MEc LINE L1 2785 3413 -2802 2970 212 13 38 chr1 192312203 192312812 -89880852 - MER77 LTR ERV1 -7 598 5 3241 235 61 13 chr1 192312815 192313763 -89879901 + L1MEc LINE L1 3408 4409 -1806 1653 229 22 3 chr1 192313763 192314121 -89879543 - MLT1A1 LTR MaLR 0 365 1 3241 235 61 13 chr1 192314121 192314182 -89879482 + L1MEc LINE L1 4409 4466 -1749 3053 159 95 25 chr1 192314220 192314810 -89878854 + MER54B LTR ERVL 1 631 -162 388 278 80 90 chr1 192314848 192315269 -89878395 - L2 LINE L2 -224 3089 2661 1579 186 7 10 chr1 192315534 192315840 -89877824 + AluJo SINE Alu 3 307 -5 350 316 20 20 chr1 192316239 192316391 -89877273 + L1MEd LINE L1 622 773 -5346 2504 67 0 9 chr1 192317355 192317671 -89875993 + AluSq SINE Alu 1 313 0 195 304 0 0 chr1 192318892 192318948 -89874716 + L3 LINE CR1 1042 1097 -480 203 337 84 0 chr1 192319946 192320029 -89873635 + L2 LINE L2 3148 3237 -35 188 324 56 0 chr1 192320052 192320123 -89873541 + MIR3 SINE MIR 109 183 -25 513 260 0 12 chr1 192320236 192320403 -89873261 + L1ME3A LINE L1 5690 5849 -321 1084 196 68 14 chr1 192320428 192320647 -89873017 - MER8 DNA MER2_type 0 239 9 1827 178 51 0 chr1 192320674 192321005 -89872659 + MER7A DNA MER2_type 1 346 0 315 313 162 14 chr1 192321071 192321368 -89872296 - MLT1I LTR MaLR -6 403 63 403 253 136 13 chr1 192321584 192321700 -89871964 - L1M4 LINE L1 -851 5295 5154 1704 166 10 55 chr1 192321700 192322007 -89871657 - AluJo SINE Alu -19 293 1 403 253 136 13 chr1 192322007 192322044 -89871620 - L1M4 LINE L1 -992 5154 5123 532 240 94 21 chr1 192322132 192322461 -89871203 - L1M4 LINE L1 -1469 4677 4325 576 279 134 1 chr1 192322467 192322957 -89870707 + L1ME3 LINE L1 5315 5878 -288 337 202 0 29 chr1 192323199 192323303 -89870361 + CT-rich Low_complexity Low_complexity 3 103 0 462 314 80 23 chr1 192323406 192323705 -89869959 + MLT1I LTR MaLR 94 409 0 * 471 295 38 6 chr1 192323705 192323880 -89869784 + Charlie8 DNA MER1_type 82 262 -2155 415 292 30 43 chr1 192324236 192324410 -89869254 - MIR SINE MIR -55 207 38 444 335 79 15 chr1 192325887 192326090 -89867574 - MIR SINE MIR -30 232 17 593 106 0 0 chr1 192326108 192326193 -89867471 - AluJ/FRAM SINE Alu -2 310 226 2159 131 3 7 chr1 192327073 192327379 -89866285 + AluSx SINE Alu 1 305 -7 833 135 0 8 chr1 192327983 192328116 -89865548 + AluJo SINE Alu 1 132 -170 184 385 37 7 chr1 192330405 192330540 -89863124 + L3b LINE CR1 1248 1386 -197 22 0 0 0 chr1 192330741 192330763 -89862901 + AT_rich Low_complexity Low_complexity 1 22 0 229 267 129 10 chr1 192331034 192331135 -89862529 - MIR SINE MIR -13 249 137 181 227 0 45 chr1 192331143 192331187 -89862477 + L2 LINE L2 3021 3062 -251 2482 80 0 0 chr1 192332261 192332563 -89861101 + AluY SINE Alu 1 302 -9 2244 101 3 13 chr1 192332829 192333137 -89860527 - AluSq SINE Alu -8 305 1 498 108 0 0 chr1 192333548 192333622 -89860042 + (CTG)n Simple_repeat Simple_repeat 1 74 0 9677 103 10 0 chr1 192333908 192336067 -89857597 + L1PA7 LINE L1 3982 6154 0 253 273 102 0 chr1 192336575 192336663 -89857001 - MIR SINE MIR -84 178 82 766 204 13 20 chr1 192336762 192336914 -89856750 + AluJo SINE Alu 137 287 -15 203 281 16 0 chr1 192337015 192337079 -89856585 - MIR SINE MIR -102 160 96 5015 129 47 21 chr1 192337338 192338182 -89855482 - L1MA8 LINE L1 -21 6270 5392 2292 106 0 7 chr1 192338182 192338483 -89855181 - AluY SINE Alu -12 299 1 5015 129 47 21 chr1 192338483 192338669 -89854995 - L1MA8 LINE L1 -899 5392 5212 271 306 82 0 chr1 192338935 192339020 -89854644 - L2 LINE L2 -1 3312 3221 680 282 97 41 chr1 192341815 192342177 -89851487 + LTR16A LTR ERVL 74 455 -2 206 224 69 0 chr1 192342205 192342321 -89851343 + (CAAA)n Simple_repeat Simple_repeat 2 125 0 2411 95 0 0 chr1 192342468 192342764 -89850900 + AluSc SINE Alu 1 296 -13 209 293 10 41 chr1 192342783 192342880 -89850784 - MIR SINE MIR -54 154 58 1966 113 7 7 chr1 192343085 192343367 -89850297 + AluSx SINE Alu 31 312 0 21 89 0 0 chr1 192343526 192343582 -89850082 + AT_rich Low_complexity Low_complexity 1 56 0 1197 157 65 44 chr1 192344694 192344988 -89848676 - MER33 DNA MER1_type 0 324 25 336 327 65 45 chr1 192345345 192345544 -89848120 + MIR SINE MIR 2 204 -58 255 360 105 9 chr1 192345921 192346035 -89847629 - MIR SINE MIR -118 144 20 252 0 0 0 chr1 192346316 192346344 -89847320 + (A)n Simple_repeat Simple_repeat 1 28 0 306 0 0 0 chr1 192347610 192347644 -89846020 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 167 0 0 chr1 192347817 192347859 -89845805 + T-rich Low_complexity Low_complexity 2 43 0 204 150 25 0 chr1 192351335 192351375 -89842289 + GA-rich Low_complexity Low_complexity 4 44 0 256 243 174 35 chr1 192352285 192352429 -89841235 - MIR SINE MIR -14 248 85 1055 198 39 0 chr1 192353476 192353683 -89839981 + MER20 DNA MER1_type 5 219 0 733 211 40 0 chr1 192353894 192354046 -89839618 - MER63A DNA MER1_type 0 210 53 21 36 0 0 chr1 192355870 192355898 -89837766 + AT_rich Low_complexity Low_complexity 1 28 0 266 291 29 48 chr1 192356433 192356477 -89837187 - MIR3 SINE MIR -15 193 150 2146 110 14 0 chr1 192356477 192356767 -89836897 - AluSx SINE Alu -18 294 1 266 291 29 48 chr1 192356767 192356825 -89836839 - MIR3 SINE MIR -58 150 93 229 31 0 31 chr1 192356966 192356998 -89836666 + (TG)n Simple_repeat Simple_repeat 1 31 0 1592 172 11 18 chr1 192358447 192358726 -89834938 + AluJb SINE Alu 24 300 -12 1404 233 86 56 chr1 192360475 192361008 -89832656 - MLT1H LTR MaLR 0 549 1 1375 219 32 29 chr1 192361311 192361622 -89832042 + AluJo SINE Alu 1 312 0 207 0 0 0 chr1 192361796 192361819 -89831845 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2067 144 13 24 chr1 192361997 192362371 -89831293 + THE1C LTR MaLR 1 370 -5 2367 108 0 0 chr1 192362372 192362677 -89830987 + AluSg SINE Alu 1 305 -5 1744 206 14 14 chr1 192362760 192363128 -89830536 + MLT1A2 LTR MaLR 3 370 -4 375 257 0 10 chr1 192363596 192363697 -89829967 - MLT1H-int LTR MaLR -1633 102 3 449 157 22 11 chr1 192363794 192363883 -89829781 - MLT1H LTR MaLR -44 505 416 318 141 30 2 chr1 192363883 192363969 -89829695 + MLT1G LTR MaLR 458 585 -4 2137 128 0 13 chr1 192363975 192364287 -89829377 + AluSx SINE Alu 1 308 -4 237 263 13 53 chr1 192366106 192366182 -89827482 + L2 LINE L2 3200 3272 0 1009 94 17 17 chr1 192367108 192367288 -89826376 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 370 169 22 11 chr1 192367292 192367381 -89826283 + GA-rich Low_complexity Low_complexity 3 92 0 427 306 122 27 chr1 192368509 192368731 -89824933 + MIR SINE MIR 1 243 -19 * 494 223 71 0 chr1 192368711 192368823 -89824841 + L2 LINE L2 3190 3309 -4 212 302 8 0 chr1 192369253 192369379 -89824285 + GA-rich Low_complexity Low_complexity 3 129 0 23 0 0 0 chr1 192370241 192370264 -89823400 + AT_rich Low_complexity Low_complexity 1 23 0 11983 116 10 53 chr1 192370958 192373864 -89819800 + L1P3 LINE L1 8 2904 -3557 21 0 0 0 chr1 192374599 192374620 -89819044 + AT_rich Low_complexity Low_complexity 1 21 0 685 250 56 11 chr1 192378146 192378351 -89815313 - MIR SINE MIR -42 220 7 1447 256 77 63 chr1 192379321 192379468 -89814196 - L1M4c LINE L1 -4671 2288 2145 1550 146 0 4 chr1 192379468 192379701 -89813963 - AluJb SINE Alu -8 304 73 1447 256 77 63 chr1 192379701 192380616 -89813048 - L1M4c LINE L1 -4814 2145 1183 360 326 57 9 chr1 192381145 192381375 -89812289 - L1M4c LINE L1 -6611 248 8 753 264 142 23 chr1 192381403 192381617 -89812047 - L1MEc LINE L1 -4584 1812 1625 2294 193 48 48 chr1 192381617 192382219 -89811445 + MER7C DNA MER2_type 1 602 0 753 264 142 23 chr1 192382219 192382447 -89811217 - L1MEc LINE L1 -4771 1625 1317 235 229 0 0 chr1 192382518 192382579 -89811085 + A-rich Low_complexity Low_complexity 4 64 0 720 124 8 197 chr1 192382579 192382838 -89810826 - MER2 DNA MER2_type -135 210 1 1562 230 43 30 chr1 192382840 192383471 -89810193 - L1MEc LINE L1 -5096 1300 662 1691 166 21 18 chr1 192383472 192383675 -89809989 - AluSx SINE Alu 0 312 111 2066 161 43 6 chr1 192383675 192384024 -89809640 - THE1B LTR MaLR 0 364 3 11571 92 12 18 chr1 192384026 192385615 -89808049 - THE1B-int LTR MaLR 0 1580 1 2288 147 28 8 chr1 192385615 192385968 -89807696 - THE1B LTR MaLR 0 364 5 1691 166 21 18 chr1 192385968 192386070 -89807594 - AluSx SINE Alu -200 112 2 1544 275 81 9 chr1 192386086 192386654 -89807010 - L1MEc LINE L1 -5714 682 74 2263 107 0 28 chr1 192386685 192387004 -89806660 - AluY SINE Alu -1 310 1 280 172 17 17 chr1 192387944 192388002 -89805662 - MLT1J2 LTR MaLR -306 144 87 27 49 0 0 chr1 192388069 192388110 -89805554 + AT_rich Low_complexity Low_complexity 1 41 0 375 304 66 41 chr1 192388151 192388588 -89805076 - L1MC4a LINE L1 -1906 5902 5455 236 206 0 27 chr1 192389150 192389223 -89804441 - L1MC4a LINE L1 -1318 4828 4758 331 356 56 18 chr1 192389252 192389536 -89804128 - L1MC4a LINE L1 -1453 4693 4399 26 30 0 0 chr1 192389675 192389708 -89803956 + AT_rich Low_complexity Low_complexity 1 33 0 312 332 70 25 chr1 192389716 192389915 -89803749 - L1MC4a LINE L1 -2217 3929 3722 254 316 48 34 chr1 192389927 192390342 -89803322 - L1MC4a LINE L1 -2439 3707 3287 28 61 0 0 chr1 192390391 192390440 -89803224 + AT_rich Low_complexity Low_complexity 1 49 0 1085 206 87 63 chr1 192390465 192390752 -89802912 - AluJo SINE Alu -8 294 1 217 219 0 0 chr1 192390903 192390944 -89802720 + (TG)n Simple_repeat Simple_repeat 2 42 0 28041 122 14 57 chr1 192391121 192395066 -89798598 - L1PA7 LINE L1 0 6154 2604 2035 147 0 3 chr1 192395066 192395379 -89798285 - AluSx SINE Alu 0 312 1 28041 122 14 57 chr1 192395379 192397864 -89795800 - L1PA7 LINE L1 -3550 2604 13 520 340 0 9 chr1 192398600 192398815 -89794849 - Charlie8 DNA MER1_type -2203 214 2 2180 136 19 27 chr1 192398871 192399238 -89794426 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr1 192400727 192400748 -89792916 + AT_rich Low_complexity Low_complexity 1 21 0 633 335 23 5 chr1 192400862 192401080 -89792584 - MIR SINE MIR -32 230 9 23 0 0 0 chr1 192401347 192401370 -89792294 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr1 192401704 192401751 -89791913 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr1 192403979 192404014 -89789650 + AT_rich Low_complexity Low_complexity 1 35 0 2109 128 0 0 chr1 192404414 192404712 -89788952 + AluSx SINE Alu 2 299 -13 299 274 0 9 chr1 192405153 192405299 -89788365 - L1M LINE L1 -803 5343 5216 286 237 82 67 chr1 192405753 192405888 -89787776 + L2 LINE L2 3115 3251 -62 1453 248 85 68 chr1 192406069 192406553 -89787111 + MLT1G LTR MaLR 1 492 -98 234 335 188 12 chr1 192407048 192407373 -89786291 + L2 LINE L2 1935 2316 -998 274 373 79 0 chr1 192407662 192407788 -89785876 + L2 LINE L2 3178 3313 0 351 317 83 48 chr1 192407816 192408046 -89785618 + L2 LINE L2 2373 2610 -704 387 222 340 0 chr1 192408094 192408238 -89785426 + MIR SINE MIR 60 252 -10 2212 129 0 0 chr1 192408311 192408620 -89785044 + AluSx SINE Alu 1 309 -3 1344 176 121 0 chr1 192408734 192409007 -89784657 - AluJb SINE Alu -6 306 1 199 308 0 0 chr1 192409316 192409368 -89784296 + L2 LINE L2 3220 3271 -1 783 178 91 43 chr1 192409543 192409581 -89784083 - L1MCb LINE L1 -4502 2125 2090 2256 89 13 13 chr1 192409581 192409884 -89783780 - AluSq SINE Alu -10 303 1 783 178 91 43 chr1 192409884 192410151 -89783513 - L1MCb LINE L1 -4537 2090 1654 14095 122 19 18 chr1 192410153 192412787 -89780877 - L1PA8A LINE L1 -3 6443 3818 234 0 0 0 chr1 192412787 192412813 -89780851 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 14095 122 19 18 chr1 192412813 192413323 -89780341 - L1PA8A LINE L1 -2628 3818 3310 7549 132 17 13 chr1 192413323 192413430 -89780234 - L1PA8A LINE L1 -4734 1141 1036 183 100 0 0 chr1 192413430 192413460 -89780204 + (TTG)n Simple_repeat Simple_repeat 1 30 0 7549 132 17 13 chr1 192413460 192414678 -89778986 - L1PA8A LINE L1 -4839 1036 2 291 167 26 51 chr1 192414679 192414757 -89778907 + C-rich Low_complexity Low_complexity 4 79 0 3473 203 44 40 chr1 192414784 192416453 -89777211 - L1MCb LINE L1 -4851 1194 5 1758 184 0 13 chr1 192416603 192416907 -89776757 - AluJo SINE Alu 0 312 13 1957 127 12 52 chr1 192418870 192419194 -89774470 - AluSx SINE Alu -1 311 1 1371 163 84 119 chr1 192419451 192419855 -89773809 + MLT1B LTR MaLR 1 390 0 209 283 0 0 chr1 192420267 192420320 -89773344 - L2 LINE L2 -338 2934 2882 1579 187 3 35 chr1 192420354 192420670 -89772994 + AluJb SINE Alu 1 306 -6 1970 125 0 0 chr1 192420764 192421060 -89772604 + AluSx SINE Alu 18 313 0 1617 172 91 0 chr1 192421349 192421466 -89772198 - L1MA8 LINE L1 -3 6288 6183 2391 91 0 0 chr1 192421466 192421763 -89771901 - AluY SINE Alu -14 297 1 1617 172 91 0 chr1 192421763 192421965 -89771699 - L1MA8 LINE L1 -108 6183 5940 590 120 0 0 chr1 192421965 192422064 -89771600 - AluSc SINE Alu 0 302 204 247 175 0 0 chr1 192422076 192422116 -89771548 + LTR30 LTR ERV1 13 52 -670 880 108 5 138 chr1 192422125 192422320 -89771344 + LTR12 LTR ERV1 66 234 -480 291 172 0 0 chr1 192422377 192422435 -89771229 + LTR12 LTR ERV1 228 285 -429 325 176 49 78 chr1 192422436 192422538 -89771126 + LTR30 LTR ERV1 379 642 -80 593 133 0 0 chr1 192422538 192422628 -89771036 + LTR12 LTR ERV1 625 714 0 1620 101 0 5 chr1 192422628 192422836 -89770828 - AluSc SINE Alu -102 207 1 2254 119 26 106 chr1 192422855 192423310 -89770354 - L1MA8 LINE L1 -371 5929 5511 24 67 0 0 chr1 192423408 192423453 -89770211 + AT_rich Low_complexity Low_complexity 1 45 0 245 50 0 25 chr1 192424012 192424052 -89769612 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 243 342 84 62 chr1 192424453 192424810 -89768854 - L2 LINE L2 -5 3267 2903 327 324 27 60 chr1 192424877 192425210 -89768454 - L2 LINE L2 -71 3242 2921 1641 181 3 39 chr1 192425509 192425819 -89767845 - AluJo SINE Alu -13 299 1 583 245 100 22 chr1 192426016 192426318 -89767346 - L1MC4a LINE L1 -297 5824 5562 809 152 0 0 chr1 192426361 192426473 -89767191 - FLAM_C SINE Alu -30 113 2 231 327 13 26 chr1 192426481 192426637 -89767027 - L1P LINE L1 -1540 4606 4453 387 355 106 20 chr1 192426685 192427139 -89766525 - L1M4 LINE L1 -1735 4411 3919 255 226 0 39 chr1 192427466 192427568 -89766096 + (TATAA)n Simple_repeat Simple_repeat 2 99 0 5304 158 16 19 chr1 192428617 192429484 -89764180 - MER6 DNA MER2_type 0 865 1 21 0 0 0 chr1 192429678 192429699 -89763965 + AT_rich Low_complexity Low_complexity 1 21 0 492 292 168 14 chr1 192430987 192431196 -89762468 + MIR SINE MIR 7 247 -15 1013 230 169 19 chr1 192431603 192431797 -89761867 - L1ME3A LINE L1 -242 5911 5747 231 61 0 0 chr1 192431797 192431830 -89761834 + (TG)n Simple_repeat Simple_repeat 2 34 0 1013 230 169 19 chr1 192431830 192431996 -89761668 - L1ME3A LINE L1 -406 5747 5497 3151 279 57 51 chr1 192432127 192432756 -89760908 - L1ME3A LINE L1 -1900 4229 3605 2716 29 0 3 chr1 192432756 192433064 -89760600 - AluY SINE Alu -1 310 4 3151 279 57 51 chr1 192433064 192433271 -89760393 - L1ME3A LINE L1 -2524 3605 3401 2113 91 7 0 chr1 192433271 192433567 -89760097 - AluSc SINE Alu 0 298 1 2305 71 13 29 chr1 192433567 192433874 -89759790 - AluSx SINE Alu -9 303 1 3151 279 57 51 chr1 192433874 192434569 -89759095 - L1ME3A LINE L1 -2728 3401 2678 1864 176 92 35 chr1 192434569 192434972 -89758692 - MSTC LTR MaLR 0 428 3 3151 279 57 51 chr1 192434972 192435468 -89758196 - L1ME3A LINE L1 -3451 2678 2186 857 288 72 64 chr1 192435532 192436374 -89757290 - L1MEd LINE L1 -4576 1734 845 2369 115 0 0 chr1 192436513 192436825 -89756839 + AluSx SINE Alu 1 312 0 191 256 23 0 chr1 192437559 192437602 -89756062 - L2 LINE L2 -15 3298 3255 2477 61 0 0 chr1 192437620 192437915 -89755749 - AluY SINE Alu -16 295 1 462 273 64 23 chr1 192440088 192440260 -89753404 - MIR SINE MIR -14 248 70 180 391 83 30 chr1 192440268 192440316 -89753348 - L2 LINE L2 -1062 2252 2208 2646 146 26 47 chr1 192440316 192440742 -89752922 + MSTB2 LTR MaLR 1 418 -39 2115 82 0 0 chr1 192440742 192440999 -89752665 - AluY SINE Alu -16 295 39 2646 146 26 47 chr1 192440999 192441039 -89752625 + MSTB2 LTR MaLR 418 457 0 180 391 83 30 chr1 192441039 192441353 -89752311 - L2 LINE L2 -1106 2208 1871 214 182 78 0 chr1 192443593 192443670 -89749994 + (TA)n Simple_repeat Simple_repeat 1 83 0 531 168 16 8 chr1 192445885 192446010 -89747654 + CT-rich Low_complexity Low_complexity 2 127 0 24 32 0 0 chr1 192446364 192446395 -89747269 + AT_rich Low_complexity Low_complexity 1 31 0 240 163 0 0 chr1 192446947 192446990 -89746674 + CT-rich Low_complexity Low_complexity 1 43 0 2393 80 3 0 chr1 192449023 192449323 -89744341 + AluSg SINE Alu 3 303 -7 285 146 0 0 chr1 192450172 192450220 -89743444 + (CA)n Simple_repeat Simple_repeat 2 49 0 261 0 0 0 chr1 192452308 192452337 -89741327 + (A)n Simple_repeat Simple_repeat 1 29 0 587 320 114 34 chr1 192456355 192456827 -89736837 + L2 LINE L2 2149 2658 -656 180 0 0 0 chr1 192457065 192457085 -89736579 + (TC)n Simple_repeat Simple_repeat 2 21 0 183 250 0 0 chr1 192457087 192457139 -89736525 + (CA)n Simple_repeat Simple_repeat 1 52 0 205 258 48 16 chr1 192459524 192459586 -89734078 - MIR SINE MIR -88 174 111 321 275 107 61 chr1 192460053 192460228 -89733436 + MIR SINE MIR 36 217 -45 330 319 121 0 chr1 192461735 192461892 -89731772 + MER5A DNA MER1_type 14 189 0 185 344 0 16 chr1 192462067 192462131 -89731533 + L2 LINE L2 3251 3313 0 2205 72 0 0 chr1 192462272 192462563 -89731101 - AluY SINE Alu 0 309 19 376 345 84 10 chr1 192463981 192464197 -89729467 - MIR SINE MIR -6 256 25 1211 277 94 24 chr1 192465501 192466195 -89727469 - L2 LINE L2 -1 3312 2546 2186 131 0 0 chr1 192467353 192467650 -89726014 + AluSx SINE Alu 1 297 -15 184 280 21 97 chr1 192468405 192468498 -89725166 + MIR SINE MIR 6 91 -171 222 37 0 0 chr1 192468531 192468558 -89725106 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 456 299 69 8 chr1 192470344 192470553 -89723111 + MIR SINE MIR 11 237 -25 528 16 0 0 chr1 192472697 192472758 -89720906 + (TC)n Simple_repeat Simple_repeat 2 62 0 270 56 0 0 chr1 192472757 192472793 -89720871 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 386 348 53 85 chr1 192473013 192473295 -89720369 - L2 LINE L2 -3 3269 2997 312 277 48 0 chr1 192474004 192474087 -89719577 + L2 LINE L2 3227 3313 0 762 105 0 0 chr1 192474304 192474418 -89719246 + (TTTCC)n Simple_repeat Simple_repeat 2 115 0 220 250 33 0 chr1 192474418 192474478 -89719186 + CT-rich Low_complexity Low_complexity 3 64 0 196 250 25 0 chr1 192474537 192474617 -89719047 + CT-rich Low_complexity Low_complexity 2 83 0 285 264 0 42 chr1 192474818 192474890 -89718774 - L2 LINE L2 -3 3310 3242 261 0 0 0 chr1 192475596 192475625 -89718039 + (TC)n Simple_repeat Simple_repeat 1 29 0 261 119 0 0 chr1 192475624 192475666 -89717998 + (CA)n Simple_repeat Simple_repeat 1 42 0 329 287 52 17 chr1 192477145 192477260 -89716404 - L3 LINE CR1 -12 1565 1447 247 323 158 8 chr1 192478038 192478171 -89715493 - MIR3 SINE MIR -12 196 44 236 299 88 39 chr1 192480062 192480213 -89713451 + MIR SINE MIR 22 175 -63 305 264 23 0 chr1 192480554 192480641 -89713023 - L1MC4 LINE L1 -1339 6703 6615 303 315 0 0 chr1 192480574 192480663 -89713001 + L1MC4 LINE L1 6614 6702 -1340 * 396 186 0 0 chr1 192480666 192480779 -89712885 + (TA)n Simple_repeat Simple_repeat 2 114 0 236 246 0 0 chr1 192480853 192480910 -89712754 + (CAT)n Simple_repeat Simple_repeat 1 57 0 29 28 0 0 chr1 192482185 192482221 -89711443 + AT_rich Low_complexity Low_complexity 1 36 0 1872 126 52 0 chr1 192482633 192482904 -89710760 - AluSx SINE Alu -27 285 1 226 333 163 0 chr1 192483766 192483907 -89709757 + MIR SINE MIR 33 196 -66 183 398 83 19 chr1 192484140 192484248 -89709416 + L2 LINE L2 3122 3236 -36 420 247 11 0 chr1 192484495 192484584 -89709080 - MER92A LTR ERV1 -29 383 294 1157 118 59 27 chr1 192484601 192484822 -89708842 - L1MA5 LINE L1 -2 6298 6071 2066 124 6 55 chr1 192484823 192485171 -89708493 - MER1B DNA MER1_type -3 336 6 742 96 8 24 chr1 192485189 192485314 -89708350 - L1MA5 LINE L1 -223 6077 5955 331 281 251 10 chr1 192486140 192486339 -89707325 + MIR SINE MIR 13 259 -3 21 71 0 0 chr1 192486449 192486491 -89707173 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 192486877 192486899 -89706765 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1 192487005 192487044 -89706620 + AT_rich Low_complexity Low_complexity 1 39 0 1820 157 0 4 chr1 192488184 192488465 -89705199 - AluJb SINE Alu -32 280 1 21 0 0 0 chr1 192488475 192488496 -89705168 + AT_rich Low_complexity Low_complexity 1 21 0 483 95 0 0 chr1 192488781 192488855 -89704809 + (CA)n Simple_repeat Simple_repeat 1 74 0 283 419 26 7 chr1 192489275 192489430 -89704234 - MIR3 SINE MIR -21 187 30 1755 162 19 7 chr1 192489729 192490037 -89703627 + AluJo SINE Alu 1 312 0 475 313 136 0 chr1 192491926 192492169 -89701495 - L2 LINE L2 -56 3257 2982 268 230 68 14 chr1 192492560 192492634 -89701030 + L2 LINE L2 3236 3313 0 1483 236 38 24 chr1 192493463 192493832 -89699832 + MLT1A2 LTR MaLR 1 374 0 580 305 51 16 chr1 192495479 192495723 -89697941 - MIR SINE MIR 0 262 4 23 78 0 0 chr1 192498316 192498367 -89695297 + AT_rich Low_complexity Low_complexity 1 51 0 452 374 6 11 chr1 192498851 192499025 -89694639 + MIR3 SINE MIR 36 208 0 2528 57 0 0 chr1 192499185 192499483 -89694181 + AluY SINE Alu 1 298 -13 253 206 29 137 chr1 192500266 192500368 -89693296 + L3b LINE CR1 1294 1384 -199 1651 174 0 34 chr1 192502868 192503192 -89690472 + AluJb SINE Alu 1 314 0 894 250 78 4 chr1 192503773 192504005 -89689659 - MIR SINE MIR -2 260 12 311 278 113 0 chr1 192505533 192505648 -89688016 - MIR SINE MIR -77 185 58 206 334 17 86 chr1 192505721 192506080 -89687584 - L2 LINE L2 -338 2976 2643 239 241 72 12 chr1 192506126 192506209 -89687455 - MER91C DNA MER1_type -34 106 19 376 341 47 8 chr1 192506292 192506421 -89687243 + L2 LINE L2 3139 3272 0 410 311 57 17 chr1 192506492 192506530 -89687134 + MIR SINE MIR 65 100 -162 1797 157 94 0 chr1 192506530 192506848 -89686816 - MER7A DNA MER2_type 0 346 1 410 311 57 17 chr1 192506848 192506986 -89686678 + MIR SINE MIR 100 248 -14 6935 144 8 0 chr1 192506988 192508126 -89685538 - L1P LINE L1 -810 5336 4190 348 98 0 20 chr1 192508117 192508200 -89685464 + L1PA10 LINE L1 6099 6180 0 * 1055 290 115 21 chr1 192508218 192508653 -89685011 + LTR16C LTR ERVL 1 476 -15 329 62 21 0 chr1 192509740 192509788 -89683876 + (GGAA)n Simple_repeat Simple_repeat 3 51 0 297 89 0 0 chr1 192509964 192510009 -89683655 + (TG)n Simple_repeat Simple_repeat 2 46 0 776 138 0 9 chr1 192512421 192512537 -89681127 + MER94 DNA DNA 14 128 -6 352 284 11 0 chr1 192513485 192513580 -89680084 - MER5A DNA MER1_type -84 105 10 309 139 0 0 chr1 192516534 192516577 -89677087 - MER105 DNA DNA -161 43 1 21 0 0 0 chr1 192517105 192517126 -89676538 + AT_rich Low_complexity Low_complexity 1 21 0 258 310 52 69 chr1 192517222 192517338 -89676326 - L2 LINE L2 -19 3253 3140 241 204 0 0 chr1 192518771 192518820 -89674844 - MIR3 SINE MIR -13 195 147 214 234 0 21 chr1 192518786 192518833 -89674831 - L3b LINE CR1 -24 1559 1514 * 243 0 0 0 chr1 192519427 192519454 -89674210 + (TA)n Simple_repeat Simple_repeat 1 27 0 286 71 0 36 chr1 192520009 192520065 -89673599 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chr1 192520505 192520535 -89673129 + AT_rich Low_complexity Low_complexity 1 30 0 490 223 14 51 chr1 192520547 192520715 -89672949 + MIR SINE MIR 30 182 -63 2593 56 0 0 chr1 192523234 192523540 -89670124 + AluY SINE Alu 1 306 -5 197 366 104 67 chr1 192523696 192524313 -89669351 - L2 LINE L2 -829 2485 1846 1440 209 54 14 chr1 192524533 192524887 -89668777 - MLT1A2 LTR MaLR 0 374 7 2107 153 34 3 chr1 192524899 192525252 -89668412 - THE1B LTR MaLR 0 364 1 10558 109 32 10 chr1 192525253 192526797 -89666867 - THE1B-int LTR MaLR -1 1579 1 1981 144 30 43 chr1 192526797 192526849 -89666815 - THE1B LTR MaLR 0 364 313 2363 104 0 3 chr1 192526849 192527158 -89666506 - AluY SINE Alu -3 308 1 1981 144 30 43 chr1 192527158 192527474 -89666190 - THE1B LTR MaLR -51 313 1 1223 282 99 43 chr1 192527545 192528098 -89665566 + MER115 DNA AcHobo 85 668 -25 23 0 0 0 chr1 192529098 192529121 -89664543 + AT_rich Low_complexity Low_complexity 1 23 0 228 209 0 0 chr1 192529619 192529662 -89664002 - MLT1K LTR MaLR -17 571 529 789 282 53 38 chr1 192530594 192531012 -89662652 + MLT1J1 LTR MaLR 1 424 -22 209 160 0 20 chr1 192531056 192531106 -89662558 + CT-rich Low_complexity Low_complexity 2 50 0 565 239 33 6 chr1 192531508 192531688 -89661976 + L1ME3A LINE L1 5653 5837 -333 459 296 105 0 chr1 192532653 192532815 -89660849 + MIR SINE MIR 47 225 -37 523 322 35 26 chr1 192533755 192534184 -89659480 + L1M4 LINE L1 2221 2653 -3493 22 0 0 0 chr1 192534220 192534242 -89659422 + AT_rich Low_complexity Low_complexity 1 22 0 2448 56 3 10 chr1 192534458 192534762 -89658902 - AluY SINE Alu -9 302 1 2371 112 0 0 chr1 192534960 192535264 -89658400 - AluSq SINE Alu -9 304 1 2504 244 31 6 chr1 192536316 192537016 -89656648 + L1ME1 LINE L1 5442 6159 -7 21 36 0 0 chr1 192537363 192537391 -89656273 + AT_rich Low_complexity Low_complexity 1 28 0 1827 201 57 24 chr1 192539236 192539951 -89653713 - MER99 DNA DNA -1 827 7 208 277 191 0 chr1 192540101 192540195 -89653469 + MIR SINE MIR 81 192 -70 236 254 0 28 chr1 192540374 192540445 -89653219 - MER99 DNA DNA -665 163 95 369 246 17 0 chr1 192540777 192540895 -89652769 + MER113 DNA MER1_type? 1 120 -401 554 256 26 39 chr1 192541156 192541213 -89652451 + MER45A DNA AcHobo 25 81 -1500 1790 123 210 11 chr1 192541213 192541401 -89652263 - MSTA LTR MaLR 0 428 279 183 42 0 0 chr1 192541401 192541425 -89652239 + (GA)n Simple_repeat Simple_repeat 1 24 0 1790 123 210 11 chr1 192541425 192541593 -89652071 - MSTA LTR MaLR -149 279 1 554 256 26 39 chr1 192541593 192541691 -89651973 + MER45A DNA AcHobo 81 178 0 10434 98 1 1 chr1 192542217 192543795 -89649869 - L1PA7 LINE L1 -2483 3663 2087 11376 101 22 43 chr1 192543795 192546298 -89647366 + L1PA7 LINE L1 3662 6154 0 642 273 0 0 chr1 192546298 192546470 -89647194 - MER115 DNA AcHobo -36 657 486 353 327 25 25 chr1 192546491 192546653 -89647011 - MER115 DNA AcHobo -497 196 35 198 0 0 0 chr1 192547551 192547573 -89646091 + (T)n Simple_repeat Simple_repeat 1 22 0 324 312 82 33 chr1 192547792 192547988 -89645676 + MIR3 SINE MIR 8 216 -46 371 258 170 6 chr1 192549212 192549371 -89644293 + MIR SINE MIR 78 262 0 23 33 0 0 chr1 192549848 192549878 -89643786 + AT_rich Low_complexity Low_complexity 1 30 0 182 424 61 0 chr1 192550116 192550215 -89643449 - L2 LINE L2 -86 3186 3082 1062 204 29 0 chr1 192550596 192550802 -89642862 + MER20 DNA MER1_type 8 219 0 281 188 29 0 chr1 192551486 192551555 -89642109 + AluS SINE Alu 230 300 -2 21 82 0 0 chr1 192552447 192552496 -89641168 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr1 192552990 192553012 -89640652 + AT_rich Low_complexity Low_complexity 1 22 0 270 324 72 29 chr1 192553272 192553411 -89640253 + MIR3 SINE MIR 42 186 -22 305 137 0 0 chr1 192553465 192553516 -89640148 - MLT2A1 LTR ERVL 0 444 394 208 206 0 0 chr1 192553516 192553550 -89640114 + (CA)n Simple_repeat Simple_repeat 1 34 0 300 183 0 17 chr1 192553550 192553610 -89640054 - L1MCa LINE L1 -4362 2064 2006 2904 78 13 18 chr1 192553631 192554047 -89639617 - MLT2A1 LTR ERVL -40 480 1 3433 99 4 0 chr1 192554069 192554565 -89639099 + L1PA13 LINE L1 5661 6158 -5 418 303 93 12 chr1 192554694 192554856 -89638808 + MIR SINE MIR 10 184 -78 654 297 156 24 chr1 192554928 192555268 -89638396 - L2 LINE L2 -1 3312 2928 393 299 52 8 chr1 192555263 192555397 -89638267 - L2 LINE L2 -497 2817 2678 * 668 253 40 0 chr1 192555401 192555575 -89638089 - MER20 DNA MER1_type -6 213 33 1448 238 5 29 chr1 192555623 192556001 -89637663 - L2 LINE L2 -644 2670 2302 4494 273 97 16 chr1 192556608 192558076 -89635588 - L2 LINE L2 -1007 2307 721 29 47 0 0 chr1 192558844 192558887 -89634777 + AT_rich Low_complexity Low_complexity 1 43 0 189 247 42 105 chr1 192558901 192559037 -89634627 + L2 LINE L2 3147 3313 0 608 263 61 30 chr1 192559235 192559433 -89634231 + MIR3 SINE MIR 3 206 -2 365 321 36 15 chr1 192560202 192560339 -89633325 + MIR SINE MIR 2 141 -121 2467 50 0 3 chr1 192560437 192560736 -89632928 - AluY SINE Alu -13 298 1 1020 198 6 0 chr1 192560942 192561119 -89632545 + MER45A DNA AcHobo 1 178 0 2295 111 3 0 chr1 192561209 192561515 -89632149 - AluSx SINE Alu -5 307 1 1817 144 19 35 chr1 192561544 192561857 -89631807 + AluJo SINE Alu 1 308 -4 747 240 181 0 chr1 192562043 192562264 -89631400 + MIR SINE MIR 2 262 0 873 338 88 55 chr1 192562531 192563038 -89630626 - L2 LINE L2 -1 3271 2783 2374 39 0 3 chr1 192563038 192563373 -89630291 + AluY SINE Alu 1 334 0 873 338 88 55 chr1 192563373 192564169 -89629495 - L2 LINE L2 -489 2783 1881 21 0 0 0 chr1 192564306 192564327 -89629337 + AT_rich Low_complexity Low_complexity 1 21 0 3894 245 84 65 chr1 192564748 192565148 -89628516 - L1MEc LINE L1 -4173 2223 1832 1485 175 4 16 chr1 192565148 192565399 -89628265 - AluJb SINE Alu -64 248 1 3894 245 84 65 chr1 192565399 192566546 -89627118 - L1MEc LINE L1 -4564 1832 625 219 69 0 0 chr1 192566546 192566575 -89627089 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3894 245 84 65 chr1 192566575 192567096 -89626568 - L1MEc LINE L1 -5771 625 115 809 279 86 87 chr1 192567173 192568365 -89625299 + L1MC4 LINE L1 6698 7888 -154 417 303 76 27 chr1 192568662 192569032 -89624632 + L1M4 LINE L1 4628 5015 -1131 449 117 0 13 chr1 192569692 192569769 -89623895 + L1PA15 LINE L1 5707 5782 -521 4825 140 12 2 chr1 192569769 192570864 -89622800 + L1PA15 LINE L1 4927 6029 -136 1896 152 18 18 chr1 192570866 192571202 -89622462 + L1PA15 LINE L1 5825 6160 -5 23 33 0 0 chr1 192571244 192571274 -89622390 + AT_rich Low_complexity Low_complexity 1 30 0 1077 93 136 59 chr1 192571296 192571532 -89622132 + L1MA4A LINE L1 5776 6029 -274 277 360 41 0 chr1 192572133 192572258 -89621406 - MIR SINE MIR -71 137 19 2278 114 0 0 chr1 192572421 192572718 -89620946 + AluSg SINE Alu 1 297 -13 802 278 118 46 chr1 192576542 192577103 -89616561 + L2 LINE L2 2573 3187 -126 201 74 0 0 chr1 192577123 192577150 -89616514 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr1 192578274 192578310 -89615354 + AT_rich Low_complexity Low_complexity 1 36 0 363 281 151 7 chr1 192578384 192578523 -89615141 - MIR SINE MIR -86 176 18 254 348 137 1 chr1 192578701 192578815 -89614849 + MIR SINE MIR 12 140 -68 383 176 118 0 chr1 192579861 192579963 -89613701 - LTR37A LTR ERV1 0 426 313 1777 164 28 51 chr1 192579972 192580363 -89613301 + MLT1B LTR MaLR 1 382 -8 766 201 31 85 chr1 192580381 192580675 -89612989 - LTR37B LTR ERV1 -117 351 74 2925 222 70 18 chr1 192581223 192582039 -89611625 + L1ME1 LINE L1 4557 5330 -836 1675 51 28 0 chr1 192582039 192582253 -89611411 + L1PA7 LINE L1 5935 6154 0 2925 222 70 18 chr1 192582253 192582951 -89610713 + L1ME1 LINE L1 5330 6148 -18 288 154 0 0 chr1 192583521 192583573 -89610091 + (CA)n Simple_repeat Simple_repeat 2 53 0 740 366 11 25 chr1 192583885 192584169 -89609495 - L2 LINE L2 -3 3269 2990 2314 84 13 10 chr1 192584295 192584604 -89609060 - AluSg SINE Alu 0 310 1 621 219 120 56 chr1 192584755 192584988 -89608676 + MIR SINE MIR 15 262 0 382 283 92 0 chr1 192585066 192585218 -89608446 - MIR SINE MIR -48 214 49 1705 157 11 25 chr1 192585838 192586151 -89607513 - AluJo SINE Alu 0 309 1 1562 197 10 14 chr1 192587056 192587345 -89606319 + AluJb SINE Alu 1 288 -24 25 0 0 0 chr1 192587348 192587373 -89606291 + AT_rich Low_complexity Low_complexity 1 25 0 461 266 78 0 chr1 192587391 192587519 -89606145 - MIR SINE MIR -73 189 52 200 267 0 0 chr1 192588112 192588157 -89605507 + GA-rich Low_complexity Low_complexity 1 45 0 444 37 0 0 chr1 192588702 192588756 -89604908 + (CA)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chr1 192590809 192590834 -89602830 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr1 192592032 192592059 -89601605 + AT_rich Low_complexity Low_complexity 1 27 0 35681 88 7 11 chr1 192593637 192599773 -89593891 + L1PA6 LINE L1 11 6121 -33 194 271 17 17 chr1 192600438 192600497 -89593167 + L2 LINE L2 3210 3268 -4 213 224 0 20 chr1 192602225 192602274 -89591390 - L2 LINE L2 -5 3267 3220 221 316 92 10 chr1 192602436 192602534 -89591130 - MER91A DNA MER1_type -1 195 90 206 402 36 0 chr1 192602533 192602645 -89591019 - MER91A DNA MER1_type -20 176 61 * 1499 177 122 4 chr1 192603677 192603948 -89589716 + AluJb SINE Alu 9 311 -1 442 286 104 0 chr1 192604749 192604903 -89588761 - MIR SINE MIR -79 183 14 241 357 63 55 chr1 192606047 192606445 -89587219 + L2 LINE L2 1385 1785 -1529 1209 148 0 5 chr1 192606447 192606656 -89587008 - L1MA4 LINE L1 -14 6286 6079 288 209 47 23 chr1 192606723 192606809 -89586855 - MLT1K LTR MaLR -20 568 481 276 283 96 32 chr1 192606870 192607057 -89586607 - MLT1L LTR MaLR -229 386 188 1041 207 5 0 chr1 192607120 192607323 -89586341 + MER20 DNA MER1_type 1 204 -15 893 297 106 26 chr1 192607495 192607968 -89585696 - MLT1J LTR MaLR 0 615 3 1433 171 136 11 chr1 192608105 192608369 -89585295 + AluJo SINE Alu 2 298 -4 271 320 55 76 chr1 192608396 192608807 -89584857 + L2 LINE L2 2826 3311 -2 355 307 48 54 chr1 192608808 192608974 -89584690 - MIR SINE MIR -62 200 36 21 0 0 0 chr1 192608993 192609014 -89584650 + AT_rich Low_complexity Low_complexity 1 21 0 879 316 98 13 chr1 192609229 192609782 -89583882 + MLT1L LTR MaLR 8 607 -8 28 0 0 0 chr1 192610351 192610379 -89583285 + AT_rich Low_complexity Low_complexity 1 28 0 182 289 0 0 chr1 192610547 192610592 -89583072 - MIR3 SINE MIR -31 177 133 223 239 45 102 chr1 192610829 192610917 -89582747 + MIR SINE MIR 4 86 -176 750 298 38 64 chr1 192610920 192611373 -89582291 - MLT1J LTR MaLR 0 511 71 328 206 55 0 chr1 192611433 192611506 -89582158 + MIR SINE MIR 92 168 -94 1013 200 63 0 chr1 192611566 192611771 -89581893 - MER20 DNA MER1_type 0 219 2 184 266 203 0 chr1 192611997 192612076 -89581588 + L2 LINE L2 3186 3280 -33 710 319 84 32 chr1 192612127 192612460 -89581204 - LTR67 LTR ERVL 0 557 243 1416 236 33 81 chr1 192612460 192612918 -89580746 + MLT2B1 LTR ERVL 1 479 -41 2122 139 0 0 chr1 192612918 192613212 -89580452 - AluSx SINE Alu -18 294 1 1416 236 33 81 chr1 192613212 192613250 -89580414 + MLT2B1 LTR ERVL 479 472 -48 191 88 29 0 chr1 192613250 192613284 -89580380 + (TA)n Simple_repeat Simple_repeat 2 36 0 1416 236 33 81 chr1 192613284 192613332 -89580332 + MLT2B1 LTR ERVL 471 520 0 710 319 84 32 chr1 192613332 192613522 -89580142 - LTR67 LTR ERVL -314 243 7 226 321 0 0 chr1 192613733 192613814 -89579850 + polypyrimidine Low_complexity Low_complexity 1 81 0 1749 181 10 0 chr1 192613856 192614148 -89579516 + AluJb SINE Alu 1 295 -17 1541 169 50 4 chr1 192614280 192614559 -89579105 + AluSq SINE Alu 1 292 -21 4148 133 8 1 chr1 192614559 192615207 -89578457 - L1PB3 LINE L1 -1 6153 5502 1832 143 104 21 chr1 192615332 192615668 -89577996 + THE1B LTR MaLR 1 364 0 10891 99 20 33 chr1 192615668 192617269 -89576395 + THE1B-int LTR MaLR 1 1580 0 2203 113 57 28 chr1 192617269 192617623 -89576041 + THE1B LTR MaLR 1 364 0 6253 52 25 0 chr1 192617650 192618466 -89575198 - L1PA7 LINE L1 -4 6150 5315 1700 109 4 0 chr1 192618465 192618731 -89574933 + L1P LINE L1 3375 3641 -2505 * 312 320 85 65 chr1 192618747 192619373 -89574291 - L1MC4a LINE L1 -333 5829 5258 2129 102 0 63 chr1 192619434 192619767 -89573897 - AluSq SINE Alu -1 312 1 366 61 0 0 chr1 192619836 192619872 -89573792 + (TG)n Simple_repeat Simple_repeat 1 85 0 366 61 0 0 chr1 192619872 192619921 -89573743 + (TG)n Simple_repeat Simple_repeat 1 49 0 459 304 65 65 chr1 192620005 192620268 -89573396 - L1MC4a LINE L1 -1101 5045 4783 4077 97 5 0 chr1 192620305 192620904 -89572760 - L1MA2 LINE L1 -42 6262 5661 2060 151 41 60 chr1 192620905 192621342 -89572322 + LTR3 LTR ERVK 1 429 0 603 40 0 0 chr1 192621343 192621417 -89572247 + LTR3b LTR ERVK 427 500 0 1907 97 0 0 chr1 192621417 192621695 -89571969 - L1MA2 LINE L1 -638 5666 5389 27 62 0 0 chr1 192621832 192621880 -89571784 + AT_rich Low_complexity Low_complexity 1 48 0 343 301 117 15 chr1 192621883 192622358 -89571306 - L1MC4a LINE L1 -1542 4604 4061 465 339 67 37 chr1 192622413 192623002 -89570662 - L1MC4a LINE L1 -2166 3980 3362 2621 176 8 2 chr1 192623230 192623714 -89569950 - L1MA4 LINE L1 -26 6274 5788 1464 245 74 17 chr1 192623818 192624414 -89569250 - MER114 LTR ERV -3 645 16 1650 173 0 18 chr1 192624602 192624880 -89568784 - AluJo SINE Alu -39 273 1 3101 16 0 2 chr1 192625161 192625598 -89568066 - L1PA3 LINE L1 -537 5618 5183 4667 17 0 0 chr1 192625598 192626127 -89567537 + L1PA3 LINE L1 5625 6155 0 28 48 0 0 chr1 192626565 192626607 -89567057 + AT_rich Low_complexity Low_complexity 1 42 0 243 169 210 16 chr1 192626613 192626737 -89566927 - MER5C DNA MER1_type -42 282 135 228 205 0 0 chr1 192629210 192629249 -89564415 + MER45 DNA AcHobo 1542 1580 -1 359 268 71 0 chr1 192629380 192629492 -89564172 - MER5C DNA MER1_type -203 121 2 2598 39 0 7 chr1 192629653 192629959 -89563705 - AluY SINE Alu -7 304 1 245 316 105 0 chr1 192630435 192630530 -89563134 - MIR SINE MIR -132 130 26 5650 163 25 19 chr1 192630544 192631362 -89562302 - L1MA8 LINE L1 0 6291 5480 2258 104 3 3 chr1 192631362 192631669 -89561995 - AluSq SINE Alu -6 307 1 5650 163 25 19 chr1 192631669 192632904 -89560760 - L1MA8 LINE L1 -811 5480 4223 244 195 98 0 chr1 192632907 192632955 -89560709 + L1 LINE L1 3438 3480 -2666 369 50 267 0 chr1 192632955 192633015 -89560649 - MADE1 DNA Mariner -4 76 1 244 195 98 0 chr1 192633015 192633048 -89560616 + L1 LINE L1 3480 3527 -2619 904 125 0 0 chr1 192633050 192633170 -89560494 + AluSq/x SINE Alu 8 127 -186 409 145 0 0 chr1 192633170 192633239 -89560425 + Alu SINE Alu 235 303 -8 3697 150 25 40 chr1 192633239 192633585 -89560079 + L1 LINE L1 3518 3868 -2278 2294 114 5 37 chr1 192633585 192633961 -89559703 + THE1B LTR MaLR 1 364 0 3697 150 25 40 chr1 192633961 192634349 -89559315 + L1 LINE L1 3868 4241 -1905 791 237 45 6 chr1 192634635 192634812 -89558852 - MER5A DNA MER1_type -1 188 5 253 245 32 43 chr1 192635687 192635781 -89557883 - LTR16C LTR ERVL -31 460 368 1548 279 100 33 chr1 192636132 192636420 -89557244 + HAL1b LINE L1 261 528 -820 1902 163 7 0 chr1 192636420 192636721 -89556943 + AluSx SINE Alu 1 303 -9 1548 279 100 33 chr1 192636721 192637224 -89556440 + HAL1b LINE L1 528 1105 -243 201 200 20 0 chr1 192638165 192638215 -89555449 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 4246 206 73 68 chr1 192638245 192639946 -89553718 + L1MC4a LINE L1 6098 7807 -1 2432 93 0 3 chr1 192640249 192640562 -89553102 - AluSq SINE Alu -1 312 1 22 35 0 0 chr1 192640776 192640805 -89552859 + AT_rich Low_complexity Low_complexity 1 29 0 1945 163 74 25 chr1 192641676 192641930 -89551734 + MSTA LTR MaLR 3 287 -141 8323 31 6 0 chr1 192641930 192643714 -89549950 + L1PA3 LINE L1 4389 6177 0 1945 163 74 25 chr1 192643714 192643862 -89549802 + MSTA LTR MaLR 287 426 -2 562 335 10 15 chr1 192644283 192644480 -89549184 + MIR3 SINE MIR 3 198 -10 21 0 0 0 chr1 192644776 192644797 -89548867 + AT_rich Low_complexity Low_complexity 1 21 0 1365 258 24 29 chr1 192645121 192645546 -89548118 + L1ME2 LINE L1 5725 6150 -14 349 312 39 32 chr1 192645589 192645743 -89547921 + L1ME LINE L1 5519 5673 -497 2091 97 4 0 chr1 192646067 192646336 -89547328 + AluSx SINE Alu 27 296 -16 376 320 103 0 chr1 192647880 192648036 -89545628 + L2 LINE L2 3098 3269 -3 254 324 48 9 chr1 192648103 192648208 -89545456 + MIR SINE MIR 98 206 -56 545 297 22 39 chr1 192648517 192648749 -89544915 + MIR SINE MIR 11 238 -24 346 287 133 0 chr1 192650606 192650749 -89542915 - MIR SINE MIR 0 262 101 6372 121 5 6 chr1 192651503 192652492 -89541172 - L1P LINE L1 -1429 4717 3730 4085 99 7 2 chr1 192652491 192653328 -89540336 + L1P4 LINE L1 4752 5594 -574 * 1264 96 0 0 chr1 192653328 192653506 -89540158 + AluYa5 SINE Alu 127 304 -7 207 292 21 0 chr1 192653673 192653721 -89539943 + L2 LINE L2 3134 3182 -90 234 279 82 48 chr1 192653741 192653888 -89539776 + MIR SINE MIR 111 262 0 343 316 70 23 chr1 192653971 192654142 -89539522 + MIR3 SINE MIR 15 193 -15 21 57 0 0 chr1 192654191 192654226 -89539438 + AT_rich Low_complexity Low_complexity 1 35 0 1904 219 5 72 chr1 192656276 192656848 -89536816 - L1ME2 LINE L1 -10 6154 5621 21 57 0 0 chr1 192657113 192657148 -89536516 + AT_rich Low_complexity Low_complexity 1 35 0 777 210 19 19 chr1 192657150 192657312 -89536352 - AluJo SINE Alu -30 282 121 243 226 48 0 chr1 192657321 192657383 -89536281 + MIR SINE MIR 113 177 -85 * 586 363 96 14 chr1 192657377 192658105 -89535559 - L2 LINE L2 -2 3311 2512 201 238 0 0 chr1 192658148 192658190 -89535474 + MIR SINE MIR 217 258 -4 245 360 13 0 chr1 192658277 192658352 -89535312 + MIR SINE MIR 10 85 -177 720 190 6 19 chr1 192659231 192659389 -89534275 - L1ME1 LINE L1 -5 6161 6006 458 259 132 17 chr1 192659419 192659593 -89534071 - L2 LINE L2 -778 2536 2343 1639 158 15 4 chr1 192659977 192660242 -89533422 + Tigger4(Zombi) DNA MER2_type 1 268 -2463 1383 112 9 14 chr1 192660244 192660467 -89533197 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 640 282 60 60 chr1 192660543 192660791 -89532873 - MIR SINE MIR 0 262 15 253 247 19 13 chr1 192661196 192661288 -89532376 + GA-rich Low_complexity Low_complexity 1 92 0 24 53 0 0 chr1 192661357 192661395 -89532269 + AT_rich Low_complexity Low_complexity 1 38 0 3504 38 2 0 chr1 192661423 192661848 -89531816 + L1PA4 LINE L1 5730 6155 0 183 80 0 0 chr1 192661916 192661941 -89531723 + (CTTTG)n Simple_repeat Simple_repeat 5 29 0 21 36 0 0 chr1 192662036 192662064 -89531600 + AT_rich Low_complexity Low_complexity 1 28 0 325 309 112 13 chr1 192662192 192662434 -89531230 - L1MC4a LINE L1 -259 5862 5591 426 85 0 0 chr1 192662434 192662493 -89531171 + (TA)n Simple_repeat Simple_repeat 1 59 0 325 309 112 13 chr1 192662493 192662589 -89531075 - L1MC4a LINE L1 -530 5591 5506 270 0 0 0 chr1 192663706 192663736 -89529928 + (TG)n Simple_repeat Simple_repeat 1 30 0 243 378 8 17 chr1 192664147 192664266 -89529398 + MIR SINE MIR 145 262 0 559 254 243 0 chr1 192664270 192664455 -89529209 + MIR SINE MIR 33 262 0 181 293 57 85 chr1 192665746 192665852 -89527812 - L3 LINE CR1 -1122 455 353 884 301 77 23 chr1 192666062 192666450 -89527214 + MLT1I LTR MaLR 1 409 0 980 289 134 13 chr1 192666808 192667402 -89526262 + L2 LINE L2 2635 3292 -21 23 0 0 0 chr1 192667663 192667686 -89525978 + AT_rich Low_complexity Low_complexity 1 23 0 350 368 0 0 chr1 192667889 192668006 -89525658 - MIR3 SINE MIR -78 130 14 312 27 0 0 chr1 192668362 192668399 -89525265 + (TG)n Simple_repeat Simple_repeat 2 38 0 216 262 33 16 chr1 192668939 192669000 -89524664 - L3 LINE CR1 -3 1574 1513 239 194 0 97 chr1 192669050 192669122 -89524542 - L3 LINE CR1 -187 1390 1326 300 347 45 78 chr1 192669130 192669375 -89524289 - L2 LINE L2 -12 3260 3024 441 290 113 11 chr1 192669792 192669978 -89523686 + MLT1L LTR MaLR 403 607 -8 274 277 123 8 chr1 192669987 192670117 -89523547 - L3 LINE CR1 -1120 457 313 196 304 0 98 chr1 192670184 192670276 -89523388 - L2 LINE L2 -4 3268 3186 305 260 252 0 chr1 192670375 192670498 -89523166 - MIR SINE MIR -24 238 85 245 300 33 0 chr1 192670771 192670831 -89522833 - L2 LINE L2 0 3313 3252 209 321 151 38 chr1 192670895 192671054 -89522610 - MIR SINE MIR 0 262 86 246 327 127 0 chr1 192671484 192671594 -89522070 - MIR SINE MIR -121 141 18 300 53 0 0 chr1 192672007 192672045 -89521619 + (T)n Simple_repeat Simple_repeat 1 38 0 461 282 261 0 chr1 192672606 192672801 -89520863 + MIR SINE MIR 7 252 -10 218 167 0 0 chr1 192672814 192672850 -89520814 + (TTG)n Simple_repeat Simple_repeat 3 38 0 352 195 86 70 chr1 192673894 192674022 -89519642 - MLT1H LTR MaLR -18 531 402 433 264 54 75 chr1 192674051 192674290 -89519374 - MLT1H LTR MaLR -231 318 85 279 0 0 0 chr1 192674687 192674718 -89518946 + (CA)n Simple_repeat Simple_repeat 2 32 0 280 343 147 14 chr1 192675378 192675521 -89518143 + L2 LINE L2 3106 3267 -5 2188 106 0 16 chr1 192675798 192676101 -89517563 + AluY SINE Alu 1 298 -13 200 40 0 0 chr1 192676101 192676126 -89517538 + (TA)n Simple_repeat Simple_repeat 2 26 0 260 137 20 0 chr1 192676126 192676177 -89517487 + (CA)n Simple_repeat Simple_repeat 2 53 0 427 277 57 21 chr1 192677353 192677494 -89516170 + L2 LINE L2 3160 3305 -8 199 296 148 34 chr1 192677648 192677736 -89515928 + L2 LINE L2 3167 3264 -8 321 310 59 48 chr1 192677804 192677991 -89515673 - MIR SINE MIR -45 217 29 286 35 0 121 chr1 192677992 192678050 -89515614 + L1MA7 LINE L1 6237 6287 -4 333 0 0 0 chr1 192679092 192679129 -89514535 + (CA)n Simple_repeat Simple_repeat 1 37 0 535 303 111 5 chr1 192679259 192679467 -89514197 - MIR SINE MIR -13 249 20 314 366 20 59 chr1 192679575 192679728 -89513936 + MIR3 SINE MIR 30 176 -32 329 307 28 6 chr1 192680201 192680400 -89513264 + L1MDa LINE L1 1752 2052 -849 1535 321 55 17 chr1 192680517 192680988 -89512676 + MER115 DNA AcHobo 108 596 -97 451 259 64 28 chr1 192681877 192682236 -89511428 + L1MDa LINE L1 2514 2885 -3655 2132 94 9 9 chr1 192682529 192682848 -89510816 + L1MA2 LINE L1 5263 5581 -724 1768 62 17 0 chr1 192682848 192683061 -89510603 + L1MA1 LINE L1 6058 6277 -25 366 42 0 0 chr1 192683061 192683109 -89510555 + (CA)n Simple_repeat Simple_repeat 2 49 0 1768 62 17 0 chr1 192683109 192683136 -89510528 + L1MA1 LINE L1 6277 6302 0 4341 106 36 20 chr1 192683140 192683158 -89510506 + L1MA2 LINE L1 5593 5609 -695 2085 117 0 3 chr1 192683158 192683440 -89510224 + AluSx SINE Alu 4 284 -28 738 32 0 0 chr1 192683440 192683533 -89510131 + (CTAAA)n Simple_repeat Simple_repeat 3 95 0 4341 106 36 20 chr1 192683533 192684214 -89509450 + L1MA2 LINE L1 5608 6304 0 351 287 8 47 chr1 192684270 192684399 -89509265 + L1MDa LINE L1 3275 3398 -3142 912 266 154 48 chr1 192684466 192684873 -89508791 - HAL1b LINE L1 -151 1197 835 2445 77 0 0 chr1 192684873 192685170 -89508494 - AluSg SINE Alu -13 297 1 912 266 154 48 chr1 192685170 192685770 -89507894 - HAL1b LINE L1 -513 835 83 246 128 0 0 chr1 192686092 192686131 -89507533 + (TG)n Simple_repeat Simple_repeat 2 40 0 864 254 88 17 chr1 192688112 192688288 -89505376 + L1MDa LINE L1 4466 4628 -1912 1768 54 0 0 chr1 192688288 192688491 -89505173 + AluY SINE Alu 1 203 -108 864 254 88 17 chr1 192688491 192688866 -89504798 + L1MDa LINE L1 4628 5062 -1478 1078 234 82 22 chr1 192688874 192689292 -89504372 + L1MDa LINE L1 5189 5618 -922 321 134 57 19 chr1 192689294 192689451 -89504213 + (TA)n Simple_repeat Simple_repeat 1 163 0 263 233 163 0 chr1 192689467 192689553 -89504111 + L1M4 LINE L1 4680 4779 -1367 262 333 36 0 chr1 192689601 192689685 -89503979 + MIR SINE MIR 161 247 -15 2463 48 0 29 chr1 192689942 192690253 -89503411 - AluY SINE Alu -9 302 1 252 149 0 0 chr1 192690328 192690375 -89503289 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 258 296 12 0 chr1 192690735 192690816 -89502848 - Charlie1 DNA MER1_type -1043 1718 1637 393 304 35 41 chr1 192691196 192691367 -89502297 + L2 LINE L2 3144 3313 0 1519 241 59 33 chr1 192691625 192692513 -89501151 + L1MC5 LINE L1 7089 7901 -60 844 277 32 0 chr1 192692581 192692830 -89500834 + MIR SINE MIR 3 259 -3 282 244 58 58 chr1 192692890 192692976 -89500688 + MER117 DNA MER1_type 28 113 -84 307 294 76 25 chr1 192693090 192693209 -89500455 - MIR3 SINE MIR -48 160 36 3568 211 68 28 chr1 192694233 192695107 -89498557 - Charlie1 DNA MER1_type -432 2329 1421 490 247 0 0 chr1 192695087 192695180 -89498484 - Charlie1 DNA MER1_type -2668 93 1 * 22 35 0 0 chr1 192695447 192695476 -89498188 + AT_rich Low_complexity Low_complexity 1 29 0 1447 279 49 92 chr1 192696792 192697241 -89496423 + MER21B LTR ERV1 1 407 -456 2463 60 0 0 chr1 192697241 192697539 -89496125 - AluY SINE Alu -13 298 1 1447 279 49 92 chr1 192697539 192697830 -89495834 + MER21B LTR ERV1 407 709 -154 252 177 25 13 chr1 192698152 192698231 -89495433 + (TATG)n Simple_repeat Simple_repeat 3 82 0 531 69 0 0 chr1 192700371 192700443 -89493221 + (GGGAA)n Simple_repeat Simple_repeat 2 73 0 360 176 29 140 chr1 192700568 192700704 -89492960 - MLT1H LTR MaLR -3 546 426 411 285 106 46 chr1 192700868 192700947 -89492717 - L1ME4a LINE L1 -207 5914 5841 1096 191 107 61 chr1 192700947 192701293 -89492371 + MLT1A1 LTR MaLR 3 364 -1 411 285 106 46 chr1 192701293 192701714 -89491950 - L1ME4a LINE L1 -280 5841 5384 1038 338 171 7 chr1 192702193 192702663 -89491001 + L2 LINE L2 2279 2895 -377 2428 90 48 25 chr1 192702663 192703019 -89490645 + THE1B LTR MaLR 1 364 0 1038 338 171 7 chr1 192703019 192703218 -89490446 + L2 LINE L2 2895 3060 -212 9490 205 46 29 chr1 192703713 192705456 -89488208 + L1M1 LINE L1 2137 3850 -3715 2088 131 0 0 chr1 192705456 192705786 -89487878 + AluSx SINE Alu 1 330 0 9490 205 46 29 chr1 192705786 192706926 -89486738 + L1M1 LINE L1 3850 4970 -2595 231 36 0 0 chr1 192706926 192706954 -89486710 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 9490 205 46 29 chr1 192706954 192707058 -89486606 + L1M1 LINE L1 4970 5071 -2494 1558 75 24 0 chr1 192707058 192707271 -89486393 + L1PA13 LINE L1 5946 6163 0 9490 205 46 29 chr1 192707271 192707636 -89486028 + L1M1 LINE L1 5071 5429 -2136 1942 151 50 34 chr1 192707636 192707994 -89485670 + THE1B LTR MaLR 1 364 0 9490 205 46 29 chr1 192707994 192708231 -89485433 + L1M1 LINE L1 5429 5809 -1756 1619 165 8 80 chr1 192708231 192708582 -89485082 + MER44D DNA MER2_type 14 609 0 2880 138 32 30 chr1 192709001 192709502 -89484162 + L1PA16 LINE L1 5656 6157 -9 464 261 0 0 chr1 192710347 192710466 -89483198 + MER103 DNA DNA 3 121 -45 258 227 0 30 chr1 192710864 192710930 -89482734 + (TATG)n Simple_repeat Simple_repeat 3 66 0 284 295 171 32 chr1 192711225 192711476 -89482188 - MLT1J LTR MaLR -2 509 224 267 288 15 0 chr1 192711524 192711590 -89482074 - MLT1J LTR MaLR -410 101 35 1500 124 164 37 chr1 192713947 192714245 -89479419 - MSTA LTR MaLR -92 336 1 6989 166 78 55 chr1 192714246 192715787 -89477877 - MSTA-int LTR MaLR -1 1579 3 1102 132 128 15 chr1 192715789 192715993 -89477671 - MSTA LTR MaLR 0 428 202 309 261 27 54 chr1 192715993 192716040 -89477624 + L1MB7 LINE L1 1557 1604 -4780 2293 91 3 3 chr1 192716040 192716338 -89477326 + AluY SINE Alu 1 298 -13 309 261 27 54 chr1 192716338 192716401 -89477263 + L1MB7 LINE L1 1604 1664 -4720 275 71 24 0 chr1 192716401 192716443 -89477221 + (GAAA)n Simple_repeat Simple_repeat 3 45 0 312 287 83 67 chr1 192716449 192716884 -89476780 + L1MB7 LINE L1 1796 2237 -4326 * 2166 204 38 49 chr1 192716874 192717507 -89476157 + L1MB7 LINE L1 4933 5558 -824 1270 151 85 30 chr1 192717500 192717771 -89475893 + L1MB7 LINE L1 6127 6412 -8 * 604 298 64 57 chr1 192717764 192718184 -89475480 - L1ME LINE L1 -440 5722 5300 * 2186 101 37 0 chr1 192718599 192718895 -89474769 + AluSc SINE Alu 3 309 0 1914 225 95 15 chr1 192719017 192719492 -89474172 - MLT2B1 LTR ERVL -2 518 6 24952 165 20 21 chr1 192719494 192719611 -89474053 - ERVL-B1 LTR ERVL 0 5764 5648 3388 69 36 13 chr1 192719611 192720089 -89473575 - LTR15 LTR ERV1 -4 489 1 24952 165 20 21 chr1 192720089 192720398 -89473266 - ERVL-B1 LTR ERVL -116 5648 5340 2817 0 0 7 chr1 192720398 192720705 -89472959 - AluYa5 SINE Alu -6 305 1 24952 165 20 21 chr1 192720705 192725249 -89468415 - ERVL-B1 LTR ERVL -424 5340 790 378 0 0 0 chr1 192725251 192725293 -89468371 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr1 192726344 192726366 -89467298 + AT_rich Low_complexity Low_complexity 1 22 0 913 269 130 32 chr1 192726377 192726901 -89466763 + HAL1b LINE L1 244 818 -530 180 0 0 0 chr1 192727265 192727285 -89466379 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1588 238 60 71 chr1 192727640 192728301 -89465363 + MLT1E1 LTR MaLR 1 654 0 359 293 75 41 chr1 192728549 192729081 -89464583 + L1M4c LINE L1 2886 3435 -2947 2364 166 27 20 chr1 192729098 192729561 -89464103 + L1MD3 LINE L1 6124 6344 0 23 54 0 0 chr1 192729729 192729766 -89463898 + AT_rich Low_complexity Low_complexity 1 37 0 288 313 47 21 chr1 192730138 192730330 -89463334 - L1 LINE L1 -2311 3835 3639 516 361 80 44 chr1 192731410 192731773 -89461891 - L2 LINE L2 0 3272 2897 1218 291 63 30 chr1 192731790 192732185 -89461479 - LTR16A LTR ERVL -12 438 31 696 263 98 0 chr1 192732835 192733071 -89460593 - MIR SINE MIR -3 259 1 211 229 0 0 chr1 192733777 192733825 -89459839 + T-rich Low_complexity Low_complexity 6 53 0 7122 31 0 0 chr1 192734804 192735638 -89458026 + L1PA5 LINE L1 5314 6147 -7 23 0 0 0 chr1 192735638 192735661 -89458003 + AT_rich Low_complexity Low_complexity 1 23 0 424 317 61 9 chr1 192735847 192736077 -89457587 - L1M4 LINE L1 -1433 4713 4472 926 212 111 33 chr1 192736132 192736439 -89457225 - L1M4 LINE L1 -898 5248 4918 252 0 0 0 chr1 192736611 192736639 -89457025 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 590 196 19 6 chr1 192736639 192736797 -89456867 + GA-rich Low_complexity Low_complexity 1 160 0 579 318 77 20 chr1 192736842 192737191 -89456473 - HAL1 LINE L1 -922 1585 1217 2092 160 11 64 chr1 192737259 192737710 -89455954 - L1M2 LINE L1 -512 5779 5353 * 6191 158 9 22 chr1 192737704 192739834 -89453830 - L1PB1 LINE L1 -4 6147 4054 2933 205 29 16 chr1 192739829 192740527 -89453137 - L1M2 LINE L1 -774 5372 4666 * 2509 55 0 3 chr1 192740679 192740990 -89452674 - AluY SINE Alu 0 311 2 253 226 0 0 chr1 192741636 192741689 -89451975 - HsTC2 DNA Tc2 -1816 82 30 2391 60 0 0 chr1 192741976 192742281 -89451383 + AluY SINE Alu 1 305 0 1697 189 0 20 chr1 192743510 192743811 -89449853 - AluJo SINE Alu -17 295 1 22 0 0 0 chr1 192744412 192744434 -89449230 + AT_rich Low_complexity Low_complexity 1 22 0 5443 115 53 3 chr1 192745644 192746843 -89446821 + L1PA13 LINE L1 4925 6159 -4 356 310 144 44 chr1 192746931 192747160 -89446504 - MIR SINE MIR -3 259 8 22 0 0 0 chr1 192747814 192747836 -89445828 + AT_rich Low_complexity Low_complexity 1 22 0 425 330 121 22 chr1 192748691 192749154 -89444510 - L1MC4a LINE L1 -1865 5943 5435 980 181 0 0 chr1 192751484 192751650 -89442014 + FRAM SINE Alu 1 166 0 22 0 0 0 chr1 192751650 192751672 -89441992 + AT_rich Low_complexity Low_complexity 1 22 0 1634 182 53 3 chr1 192751896 192752237 -89441427 + L1MB5 LINE L1 5567 5924 -250 214 200 36 18 chr1 192752239 192752294 -89441370 + (CTATT)n Simple_repeat Simple_repeat 4 59 0 270 0 0 0 chr1 192753585 192753615 -89440049 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 354 23 0 0 chr1 192753614 192753657 -89440007 + (GA)n Simple_repeat Simple_repeat 1 43 0 352 249 33 61 chr1 192754327 192754481 -89439183 - MIR SINE MIR -1 261 114 725 240 6 29 chr1 192755102 192755277 -89438387 + L1MEc LINE L1 577 747 -5649 4734 249 99 50 chr1 192755319 192755411 -89438253 + L1ME1 LINE L1 38 124 -6091 2299 87 0 7 chr1 192755411 192755711 -89437953 + AluY SINE Alu 1 298 -13 279 0 0 0 chr1 192755712 192755743 -89437921 + (CA)n Simple_repeat Simple_repeat 2 32 0 4734 249 99 50 chr1 192755743 192756476 -89437188 + L1ME1 LINE L1 124 819 -5396 1999 112 4 0 chr1 192756476 192756743 -89436921 + AluSx SINE Alu 1 268 -44 4734 249 99 50 chr1 192756743 192758313 -89435351 + L1ME1 LINE L1 819 2513 -3702 1325 135 151 8 chr1 192758313 192758565 -89435099 - L1PB4 LINE L1 -8 6148 5861 8406 215 58 87 chr1 192758565 192759347 -89434317 - L1PA12 LINE L1 -3557 4027 3224 1420 127 0 0 chr1 192759347 192759536 -89434128 + AluSx SINE Alu 1 189 -123 8406 215 58 87 chr1 192759536 192761893 -89431771 - L1PA12 LINE L1 -4360 3224 813 1198 178 21 13 chr1 192761894 192762130 -89431534 + Tigger1 DNA MER2_type 2181 2418 0 381 181 11 64 chr1 192762131 192762225 -89431439 + L1ME1 LINE L1 4104 4192 -2023 2663 237 69 36 chr1 192762226 192762665 -89430999 + L1ME1 LINE L1 4875 5298 -937 7511 116 15 10 chr1 192762665 192764638 -89429026 + L1PA8A LINE L1 4179 6131 0 2663 237 69 36 chr1 192764638 192765477 -89428187 + L1ME1 LINE L1 5298 6189 -46 456 259 12 47 chr1 192765366 192765490 -89428174 + L1MA10 LINE L1 6238 6356 -47 * 1649 198 0 16 chr1 192765490 192765803 -89427861 + AluJb SINE Alu 1 308 -4 456 259 12 47 chr1 192765803 192765848 -89427816 + L1MA10 LINE L1 6356 6401 -2 21 36 0 0 chr1 192766842 192766870 -89426794 + AT_rich Low_complexity Low_complexity 1 28 0 365 254 73 0 chr1 192769238 192769348 -89424316 - ORSL DNA AcHobo -157 118 1 1778 146 3 24 chr1 192769751 192770039 -89423625 - AluJo SINE Alu -30 282 1 2175 238 21 9 chr1 192770254 192770787 -89422877 - MER45B DNA AcHobo -1 1039 501 874 240 158 12 chr1 192770847 192771093 -89422571 - MER45B DNA AcHobo -758 282 1 343 285 72 52 chr1 192773564 192773757 -89419907 + MIR SINE MIR 20 216 -46 294 333 54 0 chr1 192774487 192774580 -89419084 + MIR SINE MIR 30 127 -81 225 157 0 84 chr1 192774580 192774663 -89419001 + T-rich Low_complexity Low_complexity 5 80 0 929 274 79 23 chr1 192775324 192775782 -89417882 - L2 LINE L2 0 3313 2779 441 214 0 26 chr1 192775930 192776047 -89417617 + Ricksha DNA DNA 9 122 -3124 * 6255 158 31 24 chr1 192776026 192777356 -89416308 + Ricksha DNA DNA 1710 3106 -145 1821 97 74 10 chr1 192777356 192777655 -89416009 - L1MA1 LINE L1 -5 6297 5980 6255 158 31 24 chr1 192777655 192777793 -89415871 + Ricksha DNA DNA 3106 3241 -10 644 168 181 13 chr1 192778992 192779147 -89414517 + MER5A DNA MER1_type 9 189 0 23 33 0 0 chr1 192780411 192780441 -89413223 + AT_rich Low_complexity Low_complexity 1 30 0 5917 104 0 3 chr1 192780763 192781909 -89411755 - L1PB1 LINE L1 -1 6866 5740 10513 189 80 6 chr1 192781909 192786366 -89407298 - L1PB1 LINE L1 -2070 4792 6 2998 182 32 18 chr1 192786385 192786665 -89406999 - L1 LINE L1 -1309 4725 4450 1770 183 3 20 chr1 192786665 192786965 -89406699 - AluSx SINE Alu -17 295 1 2998 182 32 18 chr1 192786965 192787394 -89406270 - L1 LINE L1 -1584 4450 4006 2111 264 53 58 chr1 192787405 192789119 -89404545 - L1 LINE L1 -4178 1857 350 1284 289 62 10 chr1 192789172 192789658 -89404006 - L1M3a LINE L1 -5218 737 48 21 57 0 0 chr1 192789835 192789870 -89403794 + AT_rich Low_complexity Low_complexity 1 35 0 937 185 0 13 chr1 192790218 192790375 -89403289 + FAM SINE Alu 15 169 -16 494 182 45 18 chr1 192790375 192790485 -89403179 + L1MC4a LINE L1 5821 5933 -1875 35 63 0 0 chr1 192790579 192790642 -89403022 + AT_rich Low_complexity Low_complexity 1 63 0 324 224 121 26 chr1 192790650 192790766 -89402898 + L1MC4a LINE L1 5946 6072 -1736 1026 271 80 53 chr1 192790819 192791546 -89402118 + L1MC4 LINE L1 6168 7032 -856 6633 67 3 21 chr1 192791546 192792661 -89401003 - L1PA7 LINE L1 -3 6151 5030 1026 271 80 53 chr1 192792661 192792971 -89400693 + L1MC4 LINE L1 7032 7332 -556 394 266 119 69 chr1 192793332 192793869 -89399795 - L1MCa LINE L1 -2807 3619 1229 249 254 0 0 chr1 192793964 192794031 -89399633 + CT-rich Low_complexity Low_complexity 2 68 0 2462 69 0 3 chr1 192794094 192794397 -89399267 - AluY SINE Alu -9 302 1 688 160 32 8 chr1 192794806 192794931 -89398733 + MER1B DNA MER1_type 1 128 -169 292 268 134 8 chr1 192795191 192795229 -89398435 + HAL1b LINE L1 496 528 -820 2192 87 3 19 chr1 192795229 192795539 -89398125 - AluY SINE Alu -6 305 1 292 268 134 8 chr1 192795539 192795627 -89398037 + HAL1b LINE L1 528 638 -710 209 283 33 17 chr1 192795891 192795951 -89397713 + L2 LINE L2 3002 3062 -210 194 246 16 49 chr1 192796084 192796145 -89397519 + L2 LINE L2 3214 3272 0 2491 116 21 0 chr1 192796242 192796614 -89397050 - L1PA15 LINE L1 -17 6148 5769 227 100 25 0 chr1 192796655 192796695 -89396969 - L1MB3 LINE L1 -11 6172 6132 4648 126 4 7 chr1 192796695 192797432 -89396232 - L1PA15 LINE L1 -8 6157 5423 1641 164 47 40 chr1 192798211 192798510 -89395154 - AluJb SINE Alu -11 301 1 278 393 30 22 chr1 192798720 192798855 -89394809 + L2 LINE L2 3125 3260 -12 345 276 33 92 chr1 192799056 192799208 -89394456 + MER5A DNA MER1_type 47 189 0 239 260 14 41 chr1 192799592 192799665 -89393999 + MIR3 SINE MIR 97 167 -41 544 286 31 49 chr1 192800168 192800392 -89393272 - MIR SINE MIR 0 262 43 801 139 28 14 chr1 192800432 192800576 -89393088 - L1MC2 LINE L1 -230 6114 5969 4339 87 53 0 chr1 192800959 192801317 -89392347 - L1PB1 LINE L1 0 6151 5745 252 0 0 0 chr1 192801317 192801345 -89392319 + (TG)n Simple_repeat Simple_repeat 2 29 0 4339 87 53 0 chr1 192801345 192801608 -89392056 - L1PB1 LINE L1 -406 5745 5497 22 0 0 0 chr1 192802296 192802318 -89391346 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 192802397 192802418 -89391246 + AT_rich Low_complexity Low_complexity 1 21 0 1116 246 24 24 chr1 192803045 192803419 -89390245 - THE1C LTR MaLR -1 374 1 1524 156 23 17 chr1 192803426 192803740 -89389924 - THE1C-int LTR MaLR -7 1573 1299 * 5794 113 54 8 chr1 192803736 192804651 -89389013 - THE1C-int LTR MaLR -623 957 1 1969 117 106 6 chr1 192804651 192804992 -89388672 - THE1C LTR MaLR 0 375 1 236 258 108 108 chr1 192805354 192805540 -89388124 - MIR SINE MIR -74 188 3 209 265 10 71 chr1 192805541 192805639 -89388025 + L2 LINE L2 3181 3272 0 740 153 0 8 chr1 192806089 192806220 -89387444 + THE1C LTR MaLR 246 375 0 2687 269 63 30 chr1 192807116 192808754 -89384910 + L1M2a LINE L1 274 3093 -4074 225 108 0 0 chr1 192809010 192809047 -89384617 + L1MA2 LINE L1 6259 6295 -9 226 94 0 75 chr1 192809073 192809126 -89384538 + (TAAAAA)n Simple_repeat Simple_repeat 4 52 0 410 200 36 9 chr1 192809790 192809935 -89383729 - L1ME1 LINE L1 -1 6333 6053 900 226 23 28 chr1 192810057 192810274 -89383390 + MER20 DNA MER1_type 4 219 0 202 226 57 19 chr1 192810330 192810383 -89383281 + L2 LINE L2 2926 2980 -292 * 789 206 22 17 chr1 192810379 192810559 -89383105 - MIR SINE MIR -79 183 3 1438 131 31 0 chr1 192810699 192810921 -89382743 + MER30 DNA MER1_type 1 229 -1 1430 180 45 58 chr1 192811178 192811555 -89382109 + MLT1A2 LTR MaLR 1 372 -2 225 323 42 0 chr1 192812013 192812109 -89381555 + MIR SINE MIR 151 250 -12 384 244 12 0 chr1 192812133 192812219 -89381445 + MER5A DNA MER1_type 20 106 -83 21 0 0 0 chr1 192812712 192812733 -89380931 + AT_rich Low_complexity Low_complexity 1 21 0 217 159 23 0 chr1 192812964 192813008 -89380656 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 219 265 12 72 chr1 192813682 192813765 -89379899 + MIR SINE MIR 185 262 0 349 210 0 0 chr1 192813768 192813830 -89379834 - MER63 DNA MER1_type -315 745 684 333 206 29 0 chr1 192813874 192813976 -89379688 + Charlie5 DNA MER1_type 2469 2573 -39 348 277 113 5 chr1 192813983 192814178 -89379486 - AluJo SINE Alu -14 288 73 253 229 0 0 chr1 192814735 192814783 -89378881 - L2 LINE L2 -15 3298 3251 264 30 0 0 chr1 192814847 192814880 -89378784 + (TG)n Simple_repeat Simple_repeat 2 34 0 531 304 44 6 chr1 192815287 192815445 -89378219 + MIR3 SINE MIR 2 165 -43 234 339 63 26 chr1 192816261 192816450 -89377214 + L2 LINE L2 1968 2163 -1151 326 269 128 46 chr1 192816453 192816672 -89376992 + Charlie8 DNA MER1_type 1 237 -2180 649 283 60 20 chr1 192816919 192817170 -89376494 - MIR SINE MIR 0 262 2 204 298 64 11 chr1 192817170 192817261 -89376403 + L2 LINE L2 2294 2389 -925 187 204 37 93 chr1 192818602 192818656 -89375008 - L2 LINE L2 -12 3260 3210 27 0 0 0 chr1 192818832 192818859 -89374805 + AT_rich Low_complexity Low_complexity 1 27 0 277 323 24 48 chr1 192819516 192819640 -89374024 - L2 LINE L2 -211 3102 2982 580 249 106 90 chr1 192819672 192820106 -89373558 + ERVL-F LTR ERVL 5315 5755 -9 526 307 107 4 chr1 192820107 192820332 -89373332 + MLT2F LTR ERVL 1 248 -415 939 221 13 4 chr1 192820395 192820621 -89373043 - MLT1D LTR MaLR -2 503 276 1118 102 15 3 chr1 192820759 192820946 -89372718 - L1MC1 LINE L1 -345 5829 5665 1786 140 4 0 chr1 192821031 192821288 -89372376 - AluSx SINE Alu -54 258 1 273 305 126 50 chr1 192821289 192821532 -89372132 - MIR SINE MIR -11 251 1 273 313 108 23 chr1 192822222 192822398 -89371266 - MIR3 SINE MIR -9 199 9 1814 129 45 21 chr1 192822968 192823254 -89370410 - AluSx SINE Alu -18 294 2 1695 146 7 47 chr1 192824158 192824481 -89369183 + AluJb SINE Alu 1 312 0 304 231 115 0 chr1 192824869 192824973 -89368691 - MIR SINE MIR -30 232 117 593 96 0 0 chr1 192826110 192826193 -89367471 - Alu SINE Alu -8 303 221 395 317 0 10 chr1 192826903 192827007 -89366657 - MER91B DNA MER1_type 0 190 88 1492 87 4 13 chr1 192828092 192828321 -89365343 - L1MA1 LINE L1 -68 6234 6008 313 312 0 71 chr1 192828492 192828544 -89365120 + MER5A DNA MER1_type 47 101 -88 2529 154 24 2 chr1 192828544 192828967 -89364697 + MSTB1 LTR MaLR 1 432 0 313 312 0 71 chr1 192828967 192829068 -89364596 + MER5A DNA MER1_type 101 189 0 250 312 112 40 chr1 192829068 192829176 -89364488 - L3 LINE CR1 -48 1529 1413 206 211 58 19 chr1 192829815 192829867 -89363797 - MER91A DNA MER1_type -11 185 132 379 320 40 16 chr1 192829938 192830063 -89363601 - MER91A DNA MER1_type -24 172 45 232 229 127 119 chr1 192830176 192830420 -89363244 + L2 LINE L2 2683 2928 -386 1702 173 20 14 chr1 192831062 192831357 -89362307 + AluJo SINE Alu 3 299 -13 200 290 30 80 chr1 192832539 192832639 -89361025 + L2 LINE L2 3164 3258 -14 214 286 12 24 chr1 192832944 192833028 -89360636 + MIR SINE MIR 180 262 0 290 410 54 41 chr1 192834618 192834933 -89358731 + L2 LINE L2 2949 3267 -5 354 80 0 0 chr1 192834935 192834985 -89358679 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 350 321 0 0 chr1 192835863 192835969 -89357695 + L1MC4 LINE L1 6615 6720 -1322 333 310 69 0 chr1 192835890 192836006 -89357658 - L1MC4 LINE L1 -1339 6703 6580 * 647 113 113 42 chr1 192836081 192836223 -89357441 - L1MA9 LINE L1 -5 6307 6156 260 294 79 0 chr1 192837174 192837281 -89356383 + MIR SINE MIR 65 142 -66 2554 62 0 0 chr1 192838319 192838623 -89355041 - AluY SINE Alu -7 304 1 329 240 13 0 chr1 192838712 192838787 -89354877 - L1MC4 LINE L1 -1339 6703 6628 14474 167 47 44 chr1 192839172 192844157 -89349507 + L1PA12 LINE L1 762 5754 -1830 41411 42 3 6 chr1 192844568 192850728 -89342936 + L1PA4 LINE L1 16 6152 -3 30 0 0 0 chr1 192850786 192850816 -89342848 + AT_rich Low_complexity Low_complexity 1 30 0 682 137 53 0 chr1 192850847 192850978 -89342686 - MER39B LTR ERV1 -4 649 512 261 119 0 0 chr1 192850989 192851031 -89342633 + MER39B LTR ERV1 417 458 -195 2228 121 18 21 chr1 192851031 192851411 -89342253 - MER39B LTR ERV1 -274 379 1 279 221 221 21 chr1 192851724 192851864 -89341800 - MLT1L LTR MaLR -341 170 3 292 353 39 39 chr1 192851896 192852100 -89341564 - L2 LINE L2 -556 2758 2555 325 193 0 0 chr1 192852744 192852801 -89340863 - Tigger3b DNA MER2_type -3 1228 1172 * 5388 113 30 13 chr1 192852800 192853719 -89339945 - Tigger3b DNA MER2_type -295 936 2 668 284 10 36 chr1 192853731 192853925 -89339739 - MIR SINE MIR -73 189 1 23 33 0 0 chr1 192854681 192854711 -89338953 + AT_rich Low_complexity Low_complexity 1 30 0 352 251 262 49 chr1 192854978 192855344 -89338320 - MLT1J1 LTR MaLR 0 446 3 4257 168 37 16 chr1 192855436 192855529 -89338135 - L1MA9 LINE L1 0 6312 6222 5002 78 8 3 chr1 192855529 192856186 -89337478 + PABL_A LTR ERV1 1 660 0 4257 168 37 16 chr1 192856186 192856951 -89336713 - L1MA9 LINE L1 -90 6222 5436 208 128 35 64 chr1 192856958 192857099 -89336565 + T-rich Low_complexity Low_complexity 4 140 0 331 157 9 56 chr1 192857110 192857218 -89336446 + T-rich Low_complexity Low_complexity 4 106 0 21 0 0 0 chr1 192858704 192858725 -89334939 + AT_rich Low_complexity Low_complexity 1 21 0 351 60 0 0 chr1 192858908 192858958 -89334706 + (TG)n Simple_repeat Simple_repeat 2 51 0 207 125 0 0 chr1 192858960 192859000 -89334664 + (GA)n Simple_repeat Simple_repeat 1 40 0 231 88 0 0 chr1 192859092 192859126 -89334538 + (TGG)n Simple_repeat Simple_repeat 2 35 0 347 303 18 9 chr1 192859514 192859623 -89334041 + MIR3 SINE MIR 98 207 -1 261 289 174 16 chr1 192860544 192860665 -89332999 - MIR3 SINE MIR -5 203 64 224 271 21 0 chr1 192860729 192860777 -89332887 - L2 LINE L2 -23 3290 3242 212 361 8 33 chr1 192861034 192861156 -89332508 - L2 LINE L2 -413 2901 2783 282 160 0 0 chr1 192861755 192861805 -89331859 + (TA)n Simple_repeat Simple_repeat 1 50 0 186 289 184 18 chr1 192862168 192862315 -89331349 + MIR SINE MIR 16 191 -71 221 291 171 34 chr1 192863544 192863661 -89330003 - MIR3 SINE MIR -67 141 9 1609 210 59 29 chr1 192864133 192864575 -89329089 - MLT1C LTR MaLR -6 461 7 379 322 89 48 chr1 192864589 192864735 -89328929 - L2 LINE L2 0 3272 3121 824 108 0 0 chr1 192865085 192865205 -89328459 - L1PA15 LINE L1 -6 6159 6040 843 81 0 0 chr1 192865215 192865326 -89328338 - AluY SINE Alu -10 301 191 272 250 60 0 chr1 192865906 192865990 -89327674 + L1M4 LINE L1 4771 4859 -1287 5056 79 22 21 chr1 192865997 192866716 -89326948 - L1PA11 LINE L1 0 6174 5455 240 327 27 0 chr1 192868793 192868903 -89324761 + MIR SINE MIR 96 208 -54 622 215 76 13 chr1 192869083 192869241 -89324423 + MER4E LTR ERV1 1 168 -611 1274 217 19 64 chr1 192869245 192869619 -89324045 + MER4D LTR ERV1 544 900 -3 752 228 112 0 chr1 192869629 192869835 -89323829 - LTR48B LTR ERV1 -415 229 1 442 234 156 21 chr1 192870012 192870204 -89323460 - Charlie2 DNA MER1_type -2560 222 5 240 35 0 0 chr1 192870807 192870836 -89322828 + (TTA)n Simple_repeat Simple_repeat 2 30 0 13304 86 10 9 chr1 192870837 192873481 -89320183 - L1PA7 LINE L1 -17 6452 3792 2949 109 7 0 chr1 192873484 192873904 -89319760 - L1PA7 LINE L1 -6028 433 11 3490 138 38 45 chr1 192873990 192874823 -89318841 + MER4D LTR ERV1 1 755 -11 224 217 0 0 chr1 192874849 192874895 -89318769 + CT-rich Low_complexity Low_complexity 1 46 0 267 263 68 25 chr1 192875068 192875186 -89318478 - L2 LINE L2 -534 2780 2658 306 246 64 30 chr1 192876093 192876235 -89317429 + L1MEd LINE L1 1140 1277 -4852 198 0 0 0 chr1 192876865 192876887 -89316777 + (TCTCTG)n Simple_repeat Simple_repeat 3 24 0 232 287 28 84 chr1 192877732 192877875 -89315789 - MIR SINE MIR -16 246 112 199 264 0 19 chr1 192879037 192879090 -89314574 + L2 LINE L2 3227 3278 -35 3007 75 16 0 chr1 192879896 192880283 -89313381 + L1MA2 LINE L1 5912 6304 0 31 0 0 0 chr1 192880283 192880314 -89313350 + AT_rich Low_complexity Low_complexity 1 31 0 442 202 138 0 chr1 192880584 192880693 -89312971 - LTR67 LTR ERVL -2 555 432 1654 74 14 0 chr1 192881016 192881231 -89312433 - L1PA14 LINE L1 0 6161 5944 2246 88 0 53 chr1 192881611 192881929 -89311735 + AluY SINE Alu 1 301 -10 5850 166 12 4 chr1 192883901 192885710 -89307954 - L1PA14 LINE L1 -202 5959 4136 325 251 98 60 chr1 192935857 192936072 -89257592 - L1MCa LINE L1 -4975 1451 1229 249 254 0 0 chr1 192936167 192936234 -89257430 + CT-rich Low_complexity Low_complexity 2 68 0 2438 73 0 3 chr1 192936297 192936600 -89257064 - AluY SINE Alu -9 302 1 1886 144 42 33 chr1 192937009 192937343 -89256321 + MER1B DNA MER1_type 1 337 0 187 343 10 10 chr1 192937444 192937546 -89256118 + L2 LINE L2 3181 3282 -31 354 61 0 0 chr1 192937668 192937717 -89255947 + (CA)n Simple_repeat Simple_repeat 2 50 0 914 184 45 0 chr1 192938574 192938753 -89254911 + MER5A DNA MER1_type 1 187 -2 1370 228 146 0 chr1 192939485 192939862 -89253802 + MER63B DNA MER1_type 2 433 -3 441 329 12 37 chr1 192940392 192940556 -89253108 + MIR SINE MIR 30 189 -73 6439 182 29 30 chr1 192940932 192942694 -89250970 + L1PA8 LINE L1 3 1785 -4666 * 12271 143 8 7 chr1 192942692 192943165 -89250499 + L1PA8 LINE L1 2884 3355 -3106 2169 107 7 0 chr1 192943165 192943455 -89250209 + AluSg1 SINE Alu 1 292 -17 12271 143 8 7 chr1 192943455 192945057 -89248607 + L1PA8 LINE L1 3355 4961 -1500 6077 101 12 3 chr1 192945271 192946180 -89247484 + L1PA8 LINE L1 5570 6486 -1 469 266 92 17 chr1 192946188 192946361 -89247303 - MIR SINE MIR -13 249 64 522 202 0 0 chr1 192946438 192946527 -89247137 + AluJ/FLAM SINE Alu 1 89 -223 * 703 167 0 0 chr1 192946525 192946645 -89247019 + AluJo/FRAM SINE Alu 187 306 -6 2659 150 90 23 chr1 192947005 192947571 -89246093 - L1MA9 LINE L1 0 6312 5709 22 0 0 0 chr1 192947579 192947601 -89246063 + AT_rich Low_complexity Low_complexity 1 22 0 194 125 0 25 chr1 192947665 192947705 -89245959 + (TA)n Simple_repeat Simple_repeat 1 39 0 270 0 0 0 chr1 192947708 192947738 -89245926 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr1 192949137 192949160 -89244504 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 192949350 192949378 -89244286 + AT_rich Low_complexity Low_complexity 1 28 0 186 191 0 0 chr1 192949593 192949635 -89244029 + (CA)n Simple_repeat Simple_repeat 2 43 0 2152 135 7 0 chr1 192949676 192949979 -89243685 - AluSx SINE Alu -7 305 1 24450 152 18 14 chr1 192950482 192952626 -89241038 - L1PA8A LINE L1 -4 6442 4308 1954 88 27 0 chr1 192952626 192952888 -89240776 - AluSg SINE Alu -15 295 27 24450 152 18 14 chr1 192952888 192956363 -89237301 - L1PA8A LINE L1 -2138 4308 774 5932 105 0 3 chr1 192956705 192957851 -89235813 - L1PB1 LINE L1 -1 6866 5740 11368 189 81 7 chr1 192957851 192962308 -89231356 - L1PB1 LINE L1 -2070 4792 6 3206 180 32 18 chr1 192962327 192962607 -89231057 - L1 LINE L1 -1309 4725 4450 1730 183 3 20 chr1 192962607 192962907 -89230757 - AluSx SINE Alu -17 295 1 3206 180 32 18 chr1 192962907 192963336 -89230328 - L1 LINE L1 -1584 4450 4006 2347 265 53 59 chr1 192963347 192965062 -89228602 - L1 LINE L1 -4178 1857 350 1412 293 59 10 chr1 192965067 192965601 -89228063 - L1 LINE L1 -5218 737 48 21 57 0 0 chr1 192965778 192965813 -89227851 + AT_rich Low_complexity Low_complexity 1 35 0 918 185 0 13 chr1 192966159 192966316 -89227348 + FAM SINE Alu 15 169 -16 528 182 45 18 chr1 192966316 192966426 -89227238 + L1MC4a LINE L1 5821 5933 -1875 38 75 0 0 chr1 192966520 192966600 -89227064 + AT_rich Low_complexity Low_complexity 1 80 0 5713 123 13 33 chr1 192967007 192967954 -89225710 - L1P3 LINE L1 -4947 928 1 434 297 52 49 chr1 192967968 192968315 -89225349 + HAL1b LINE L1 94 441 -907 496 278 28 24 chr1 192968350 192968562 -89225102 + HAL1b LINE L1 435 647 -701 287 327 0 10 chr1 192968622 192968723 -89224941 + LTR33 LTR ERVL 32 131 -390 739 303 76 13 chr1 192968899 192969375 -89224289 + L1ME3A LINE L1 4617 5122 -1024 22 35 0 0 chr1 192969411 192969440 -89224224 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 192969486 192969508 -89224156 + AT_rich Low_complexity Low_complexity 1 22 0 248 231 54 41 chr1 192969522 192969669 -89223995 + L1P5 LINE L1 5352 5500 -656 * 2267 257 114 2 chr1 192969667 192970566 -89223098 + L1ME3A LINE L1 5150 6153 -17 549 321 41 22 chr1 192970600 192970918 -89222746 + L1ME LINE L1 5489 5812 -350 32 26 0 0 chr1 192970920 192970959 -89222705 + AT_rich Low_complexity Low_complexity 1 39 0 265 277 7 14 chr1 192971423 192971564 -89222100 + CT-rich Low_complexity Low_complexity 1 140 0 263 362 0 11 chr1 192971565 192971659 -89222005 + C-rich Low_complexity Low_complexity 4 96 0 206 246 35 18 chr1 192971667 192971781 -89221883 + CT-rich Low_complexity Low_complexity 4 119 0 244 310 14 0 chr1 192971785 192971856 -89221808 + C-rich Low_complexity Low_complexity 4 75 0 326 243 12 24 chr1 192972133 192972302 -89221362 + GA-rich Low_complexity Low_complexity 4 170 0 280 306 105 23 chr1 192972304 192972693 -89220971 + L1MC/D LINE L1 4415 4835 -1311 26 30 0 0 chr1 192972885 192972918 -89220746 + AT_rich Low_complexity Low_complexity 1 33 0 612 308 123 6 chr1 192973129 192973486 -89220178 + L1MC/D LINE L1 5313 5711 -2097 227 195 110 37 chr1 192973662 192973744 -89219920 - MLT1J LTR MaLR -338 173 86 237 343 10 10 chr1 192973851 192973950 -89219714 + Charlie8 DNA MER1_type 154 252 -2165 193 231 0 0 chr1 192974081 192974120 -89219544 - L2 LINE L2 -1408 1906 1868 583 296 67 28 chr1 192974204 192974613 -89219051 - MLT1J LTR MaLR -24 487 23 1276 174 34 86 chr1 192974970 192975297 -89218367 + L1MA9 LINE L1 5841 6150 -162 653 176 0 0 chr1 192975337 192975456 -89218208 + L1MA9 LINE L1 6155 6273 -39 603 316 64 0 chr1 192975505 192975692 -89217972 + MIR SINE MIR 47 245 -17 2267 137 6 3 chr1 192975899 192976265 -89217399 - L1PB4 LINE L1 -1 6155 5789 16582 154 37 8 chr1 192976390 192976639 -89217025 - L1 LINE L1 -2756 4809 4569 2440 66 3 0 chr1 192976639 192976943 -89216721 - AluY SINE Alu -6 305 1 16582 154 37 8 chr1 192976943 192980787 -89212877 - L1 LINE L1 -2996 4569 618 1310 213 8 65 chr1 192980811 192981178 -89212486 + L1M1 LINE L1 82 427 -7138 1305 234 28 25 chr1 192981227 192981317 -89212347 - L1 LINE L1 -753 5393 5305 1792 180 16 3 chr1 192981317 192981623 -89212041 - AluJb SINE Alu 0 312 3 1305 234 28 25 chr1 192981623 192981967 -89211697 - L1 LINE L1 -841 5305 4958 429 148 46 0 chr1 192981974 192982082 -89211582 - L1 LINE L1 -1646 4500 4388 3470 195 33 42 chr1 192982184 192982908 -89210756 - L1 LINE L1 -1675 4471 3788 4495 116 7 1 chr1 192982908 192983580 -89210084 + L1PA10 LINE L1 5488 6163 -5 3470 195 33 42 chr1 192983580 192984096 -89209568 - L1 LINE L1 -2358 3788 3269 2120 279 47 21 chr1 192984116 192985147 -89208517 - L1PA15-16 LINE L1 -5503 1346 397 303 311 84 8 chr1 192985540 192985791 -89207873 + L1MEc LINE L1 1055 1324 -5072 357 275 47 5 chr1 192985792 192986003 -89207661 + L1M4 LINE L1 4140 4359 -1787 2888 141 41 10 chr1 192986013 192986888 -89206776 + L1P5 LINE L1 4796 5697 -454 3907 212 26 28 chr1 192986993 192988277 -89205387 + L1PA7 LINE L1 1036 2327 -4134 7355 116 14 56 chr1 192988292 192990339 -89203325 + L1PA7 LINE L1 4460 6468 -1 268 308 101 15 chr1 192990577 192990744 -89202920 - MIR SINE MIR -43 219 32 235 241 81 11 chr1 192990927 192991014 -89202650 - Tigger2 DNA MER2_type -2293 425 333 209 204 20 0 chr1 192991242 192991291 -89202373 + G-rich Low_complexity Low_complexity 2 51 0 242 252 0 27 chr1 192991304 192991415 -89202249 + G-rich Low_complexity Low_complexity 1 108 0 26 0 0 0 chr1 192991424 192991450 -89202214 + GC_rich Low_complexity Low_complexity 1 26 0 525 158 96 7 chr1 192991581 192991727 -89201937 + L1PA8 LINE L1 5909 6067 -105 * 2288 148 5 5 chr1 192991723 192992136 -89201528 - L1P5 LINE L1 -361 5795 5383 8807 141 19 5 chr1 192992145 192994766 -89198898 - L1MA1 LINE L1 0 6302 3642 215 354 83 21 chr1 192995158 192995350 -89198314 - MIR SINE MIR -27 235 32 1535 181 29 35 chr1 192997189 192997263 -89196401 - MLT1B LTR MaLR -49 341 268 1862 104 100 7 chr1 192997263 192997543 -89196121 - AluSx SINE Alu -6 306 1 1535 181 29 35 chr1 192997543 192997811 -89195853 - MLT1B LTR MaLR -122 268 1 192 256 40 68 chr1 192998198 192998374 -89195290 + L2 LINE L2 1335 1505 -1809 1380 134 197 33 chr1 192998555 192998860 -89194804 + THE1A LTR MaLR 1 355 0 23 68 0 0 chr1 192998864 192998908 -89194756 + AT_rich Low_complexity Low_complexity 1 44 0 2222 103 13 7 chr1 192999529 192999829 -89193835 + AluSg SINE Alu 1 302 -8 377 143 14 0 chr1 192999829 192999899 -89193765 + L1PB1 LINE L1 5965 6035 -116 * 5932 131 21 11 chr1 192999898 193000876 -89192788 + L1P3 LINE L1 8 995 -4880 225 0 0 0 chr1 193000992 193001019 -89192645 + L1PA8A LINE L1 6015 6041 -90 925 98 0 0 chr1 193001121 193001254 -89192410 + L1PB1 LINE L1 6018 6150 -1 1258 276 81 23 chr1 193001263 193002575 -89191089 + L1ME3A LINE L1 4373 5768 -402 692 179 68 49 chr1 193002616 193002778 -89190886 - MER58B DNA MER1_type -3 338 174 408 243 9 0 chr1 193002789 193002896 -89190768 + L1ME3A LINE L1 5802 5909 -261 278 298 57 13 chr1 193002911 193003069 -89190595 + L1ME3A LINE L1 6001 6165 -5 372 260 81 49 chr1 193003591 193003714 -89189950 - L2 LINE L2 0 3313 3187 1041 161 11 0 chr1 193003884 193004064 -89189600 - L1MC1 LINE L1 0 6333 6152 321 89 0 0 chr1 193004074 193004119 -89189545 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2211 110 3 0 chr1 193004344 193004644 -89189020 - AluY SINE Alu -10 301 1 229 271 84 24 chr1 193004713 193004879 -89188785 - L1ME LINE L1 -238 5883 5708 191 286 20 0 chr1 193004919 193004968 -89188696 + L2 LINE L2 3215 3264 -8 409 277 42 0 chr1 193005735 193005854 -89187810 - L2 LINE L2 -1 3271 3148 1237 213 120 37 chr1 193006351 193006727 -89186937 + MLT2F LTR ERVL 188 594 -69 290 272 148 24 chr1 193006848 193007017 -89186647 + L2 LINE L2 3123 3312 -1 993 202 118 11 chr1 193007231 193007493 -89186171 + MLT1D LTR MaLR 4 293 -212 466 313 105 42 chr1 193007976 193008489 -89185175 + L2 LINE L2 2738 3272 0 274 315 139 0 chr1 193008612 193008720 -89184944 - MIR SINE MIR -11 251 129 525 310 83 14 chr1 193008922 193009138 -89184526 - MIR SINE MIR -21 241 11 449 337 12 18 chr1 193009174 193009343 -89184321 + MER5B DNA MER1_type 1 168 -10 250 307 159 23 chr1 193009999 193010170 -89183494 + MIR SINE MIR 21 206 -56 362 304 57 6 chr1 193010473 193010631 -89183033 + MLT1J2 LTR MaLR 1 166 -284 2473 61 0 0 chr1 193010954 193011249 -89182415 + AluY SINE Alu 1 295 -16 231 254 64 18 chr1 193011252 193011362 -89182302 + L1MA9 LINE L1 6196 6310 -2 455 168 102 29 chr1 193012427 193012564 -89181100 - MER104 DNA Tc2 0 180 34 284 276 112 17 chr1 193012775 193012891 -89180773 + L2 LINE L2 3187 3313 0 195 375 42 31 chr1 193012935 193013031 -89180633 + L2 LINE L2 3137 3233 -39 2412 82 0 0 chr1 193013067 193013372 -89180292 + AluY SINE Alu 1 305 -6 4760 116 74 38 chr1 193013850 193014692 -89178972 + MER4D LTR ERV1 1 872 0 1898 168 10 3 chr1 193014806 193015116 -89178548 + AluJb SINE Alu 1 312 0 187 157 39 20 chr1 193015116 193015167 -89178497 + GA-rich Low_complexity Low_complexity 3 54 0 189 0 0 0 chr1 193015172 193015193 -89178471 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 817 270 79 64 chr1 193015952 193016264 -89177400 + L1MC4 LINE L1 6701 7007 -1035 6536 70 3 24 chr1 193016264 193017379 -89176285 - L1PA7 LINE L1 -3 6151 5030 817 270 79 64 chr1 193017379 193017689 -89175975 + L1MC4 LINE L1 7007 7332 -710 5686 44 1 3 chr1 193018349 193019294 -89174370 + L1P1 LINE L1 4658 5600 -555 4567 109 48 33 chr1 193019405 193020319 -89173345 - L1P3 LINE L1 -4800 1661 751 459 304 62 10 chr1 193021351 193021657 -89172007 - L1ME4a LINE L1 -210 5911 5590 209 232 55 7 chr1 193021734 193021801 -89171863 + MIR SINE MIR 64 131 -77 251 214 4 52 chr1 193022465 193022725 -89170939 + G-rich Low_complexity Low_complexity 1 247 0 225 336 0 31 chr1 193023305 193023433 -89170231 + CT-rich Low_complexity Low_complexity 2 125 0 * 433 295 24 41 chr1 193023362 193023832 -89169832 + C-rich Low_complexity Low_complexity 1 462 0 641 121 0 30 chr1 193025126 193025245 -89168419 + AluSp/q SINE Alu 188 303 0 294 353 24 6 chr1 193025678 193025845 -89167819 + MER20B DNA MER1_type 2 171 -612 1661 149 3 30 chr1 193025873 193026168 -89167496 + AluJo SINE Alu 15 301 -11 2760 16 0 3 chr1 193026170 193026480 -89167184 + AluYa5 SINE Alu 1 309 -2 188 293 131 20 chr1 193026840 193026939 -89166725 - L3b LINE CR1 -9 1574 1465 316 330 69 35 chr1 193027701 193027874 -89165790 - L1ME LINE L1 -342 5779 5601 402 265 10 0 chr1 193028402 193028504 -89165160 + L1M3a LINE L1 12 114 -5841 352 250 0 12 chr1 193029096 193029176 -89164488 - MIR SINE MIR -113 149 71 1931 122 11 0 chr1 193030100 193030371 -89163293 + AluSq SINE Alu 40 313 0 685 151 7 82 chr1 193030724 193030870 -89162794 - FRAM SINE Alu -30 146 12 243 103 0 0 chr1 193031007 193031046 -89162618 + (TG)n Simple_repeat Simple_repeat 2 40 0 1887 145 0 36 chr1 193031344 193031648 -89162016 - AluJo SINE Alu -19 293 1 183 80 0 0 chr1 193031696 193031721 -89161943 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 3944 186 43 41 chr1 193032242 193032945 -89160719 - L1PB3 LINE L1 0 6154 5453 2143 113 20 0 chr1 193032945 193033246 -89160418 - AluSx SINE Alu -5 307 1 3944 186 43 41 chr1 193033246 193034290 -89159374 - L1PB3 LINE L1 -701 5453 4396 520 129 51 0 chr1 193034850 193035189 -89158475 + (TA)n Simple_repeat Simple_repeat 1 356 0 59 15 0 0 chr1 193035189 193035255 -89158409 + AT_rich Low_complexity Low_complexity 1 66 0 261 154 33 0 chr1 193035255 193035346 -89158318 + (TA)n Simple_repeat Simple_repeat 1 94 0 595 64 64 29 chr1 193035378 193035551 -89158113 + (TA)n Simple_repeat Simple_repeat 2 180 0 373 176 40 40 chr1 193035554 193035730 -89157934 + (TTATA)n Simple_repeat Simple_repeat 3 178 0 330 152 33 60 chr1 193035710 193035894 -89157770 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 * 11460 42 1 0 chr1 193035914 193038080 -89155584 - L1PA4 LINE L1 -7 6148 3981 3190 28 0 0 chr1 193038080 193038468 -89155196 - L1PA4 LINE L1 -3060 3086 2699 298 317 154 5 chr1 193038615 193038823 -89154841 - MIR SINE MIR -14 248 10 2294 115 0 0 chr1 193038889 193039202 -89154462 - AluSq SINE Alu 0 313 1 1534 197 18 117 chr1 193039436 193039888 -89153776 + MLT1D-int LTR MaLR 963 1369 -2 911 248 113 29 chr1 193039913 193040459 -89153205 + MLT1D LTR MaLR 13 504 -1 586 187 180 20 chr1 193041694 193041844 -89151820 + MER5B DNA MER1_type 3 176 -2 1040 216 166 3 chr1 193042526 193042822 -89150842 - MER2 DNA MER2_type 0 344 1 915 287 91 31 chr1 193043309 193043710 -89149954 + L1M4 LINE L1 2806 3181 -2965 1902 167 3 0 chr1 193043710 193044009 -89149655 + AluJb SINE Alu 1 300 -12 915 287 91 31 chr1 193044009 193044552 -89149112 + L1M4 LINE L1 3181 3807 -2339 * 1697 11 0 0 chr1 193044534 193044724 -89148940 - L1P2 LINE L1 -529 5626 5437 259 27 0 0 chr1 193044721 193044758 -89148906 + L1PA2 LINE L1 6116 6152 -3 * 21 57 0 0 chr1 193044801 193044836 -89148828 + AT_rich Low_complexity Low_complexity 1 35 0 686 188 252 34 chr1 193045052 193045258 -89148406 + MER33 DNA MER1_type 1 161 -2424 2216 118 3 0 chr1 193045258 193045555 -89148109 - AluSp SINE Alu -13 300 3 686 188 252 34 chr1 193045555 193045614 -89148050 + MER33 DNA MER1_type 161 324 0 499 258 57 76 chr1 193045616 193045984 -89147680 + L1M4 LINE L1 4036 4396 -1750 229 206 44 29 chr1 193046140 193046208 -89147456 + MER113 DNA MER1_type? 329 397 -124 218 288 102 0 chr1 193046287 193046346 -89147318 + MER5A DNA MER1_type 9 73 -116 322 247 65 0 chr1 193047648 193047741 -89145923 + MIR SINE MIR 90 188 -74 531 222 20 0 chr1 193047807 193047906 -89145758 - L2 LINE L2 -3 3269 3169 2333 101 0 22 chr1 193048641 193048957 -89144707 - AluSx SINE Alu -1 311 3 559 322 35 26 chr1 193049102 193049329 -89144335 - MIR SINE MIR -6 256 28 997 272 23 7 chr1 193049513 193049875 -89143789 - LTR16A LTR ERVL -20 430 1 617 274 38 60 chr1 193050346 193050612 -89143052 - MIR SINE MIR 0 262 3 2874 297 80 14 chr1 193050855 193052221 -89141443 - L2 LINE L2 0 3313 1860 306 303 115 46 chr1 193052606 193052824 -89140840 - MIR SINE MIR 0 262 30 193 200 25 0 chr1 193053567 193053607 -89140057 + MIR3 SINE MIR 168 208 0 247 286 0 0 chr1 193055523 193055586 -89138078 - L2 LINE L2 0 3313 3251 231 325 108 0 chr1 193055802 193055885 -89137779 + MIR3 SINE MIR 6 97 -111 21 71 0 0 chr1 193057367 193057409 -89136255 + AT_rich Low_complexity Low_complexity 1 42 0 1040 149 77 10 chr1 193057555 193057749 -89135915 - MSTC LTR MaLR -221 207 1 255 93 0 0 chr1 193058163 193058206 -89135458 + (TA)n Simple_repeat Simple_repeat 2 44 0 449 145 232 0 chr1 193058212 193058324 -89135340 + L1M4 LINE L1 5656 5790 -384 850 98 30 0 chr1 193058326 193058459 -89135205 + L1MA5 LINE L1 6162 6298 -2 263 175 52 72 chr1 193058486 193058583 -89135081 - MER20B DNA MER1_type 0 783 689 665 280 114 76 chr1 193059210 193059442 -89134222 + L2 LINE L2 2272 2494 -820 2136 180 18 0 chr1 193059442 193059825 -89133839 - MLT1B LTR MaLR 0 390 1 665 280 114 76 chr1 193059825 193060038 -89133626 + L2 LINE L2 2494 2734 -580 1149 316 43 0 chr1 193061256 193061655 -89132009 - LTR16B LTR ERVL -11 453 38 304 197 82 0 chr1 193061657 193061718 -89131946 - LTR16B LTR ERVL -396 68 3 2254 170 35 16 chr1 193062275 193062699 -89130965 - MSTB1 LTR MaLR 0 432 1 238 399 23 8 chr1 193062781 193062914 -89130750 - L2 LINE L2 0 3272 3138 2224 104 0 0 chr1 193062932 193063220 -89130444 + AluSc SINE Alu 1 288 -21 184 250 173 0 chr1 193063253 193063305 -89130359 - MIR3 SINE MIR -4 204 144 564 165 0 41 chr1 193063879 193064000 -89129664 - FLAM_A SINE Alu 0 142 27 237 341 77 44 chr1 193064002 193064184 -89129480 + L2 LINE L2 2574 2761 -553 791 244 144 18 chr1 193065184 193065247 -89128417 - LTR50 LTR ERVL 0 795 741 2180 125 73 14 chr1 193065247 193065591 -89128073 + THE1B LTR MaLR 1 364 0 791 244 144 18 chr1 193065591 193066047 -89127617 - LTR50 LTR ERVL -54 741 11 289 202 48 60 chr1 193066359 193066414 -89127250 + L2 LINE L2 3231 3286 -27 207 100 0 0 chr1 193066414 193066444 -89127220 + (TG)n Simple_repeat Simple_repeat 1 30 0 289 202 48 60 chr1 193066444 193066472 -89127192 + L2 LINE L2 3286 3313 0 1576 194 7 7 chr1 193066972 193067260 -89126404 + L1MA9 LINE L1 11 298 -6732 2498 232 31 55 chr1 193067263 193068739 -89124925 + L1MA9 LINE L1 1310 2749 -4358 2389 154 49 10 chr1 193068744 193069154 -89124510 - MSTB LTR MaLR 0 426 1 775 112 47 82 chr1 193069154 193069324 -89124340 - MSTB-int LTR MaLR 0 1651 1488 1367 210 46 0 chr1 193069325 193069654 -89124010 + L1MA9 LINE L1 3643 3986 -3120 9362 166 40 15 chr1 193069662 193069892 -89123772 + L1MA9 LINE L1 4251 4474 -2798 1717 171 10 3 chr1 193069892 193070201 -89123463 + AluJb SINE Alu 1 311 -1 9362 166 40 15 chr1 193070201 193072918 -89120746 + L1MA9 LINE L1 4474 7257 -15 182 36 0 36 chr1 193073274 193073302 -89120362 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 462 287 75 11 chr1 193073326 193073500 -89120164 + MIR SINE MIR 59 243 -19 407 314 16 8 chr1 193073590 193073711 -89119953 + L2 LINE L2 3186 3307 -6 239 232 183 0 chr1 193073858 193073940 -89119724 + MIR SINE MIR 120 216 -46 222 349 142 0 chr1 193074817 193074923 -89118741 - MIR3 SINE MIR -7 201 81 227 231 62 15 chr1 193075049 193075114 -89118550 + MLT1J LTR MaLR 100 167 -344 510 324 107 39 chr1 193075513 193076229 -89117435 + L2 LINE L2 2492 3250 -22 363 325 32 6 chr1 193076942 193077099 -89116565 + MIR3 SINE MIR 41 201 -7 237 322 13 81 chr1 193077828 193077977 -89115687 + MIR3 SINE MIR 25 163 -45 325 276 239 8 chr1 193078818 193078952 -89114712 + MER46C DNA MER2_type 167 331 -7 2096 129 7 0 chr1 193079795 193080089 -89113575 + AluSx SINE Alu 1 296 -16 212 296 28 56 chr1 193080170 193080241 -89113423 - L2 LINE L2 -1 3271 3203 800 234 16 11 chr1 193081690 193081878 -89111786 + MER5A DNA MER1_type 1 189 0 215 299 93 31 chr1 193083227 193083324 -89110340 - L2 LINE L2 -10 3303 3201 207 381 10 10 chr1 193083512 193083609 -89110055 - L2 LINE L2 -305 2967 2871 523 311 68 52 chr1 193083621 193084106 -89109558 - MLT1J LTR MaLR -7 504 12 184 341 157 44 chr1 193084253 193084725 -89108939 - L2 LINE L2 -577 2737 2183 2611 40 0 0 chr1 193084725 193085024 -89108640 - AluY SINE Alu -12 299 1 184 341 157 44 chr1 193085024 193085144 -89108520 - L2 LINE L2 -1131 2183 2078 517 278 163 13 chr1 193086302 193086529 -89107135 + MIR SINE MIR 2 262 0 398 234 55 152 chr1 193087337 193087593 -89106071 - L2 LINE L2 -10 3262 3032 2590 72 32 3 chr1 193088184 193088532 -89105132 - L1PA8 LINE L1 -9 6163 5806 23 0 0 0 chr1 193089275 193089298 -89104366 + AT_rich Low_complexity Low_complexity 1 23 0 1047 144 29 11 chr1 193089879 193090053 -89103611 + L1PA15 LINE L1 5976 6152 -13 841 228 123 5 chr1 193090639 193090850 -89102814 - MIR SINE MIR -21 241 6 568 213 63 31 chr1 193091401 193091528 -89102136 - L2 LINE L2 -1 3271 3141 486 258 75 8 chr1 193092439 193092559 -89101105 - L2 LINE L2 0 3313 3186 1025 216 29 0 chr1 193093512 193093720 -89099944 + MER20 DNA MER1_type 2 215 -4 15082 127 48 22 chr1 193093737 193093818 -89099846 + Tigger2 DNA MER2_type 1 78 -2640 2414 86 0 10 chr1 193093818 193094120 -89099544 + AluSx SINE Alu 5 303 -9 15082 127 48 22 chr1 193094120 193094159 -89099505 + Tigger2 DNA MER2_type 78 115 -2603 2428 61 0 3 chr1 193094159 193094453 -89099211 + AluY SINE Alu 1 293 -18 15082 127 48 22 chr1 193094453 193096981 -89096683 + Tigger2 DNA MER2_type 115 2718 0 2457 135 28 9 chr1 193097029 193097458 -89096206 - LTR23 LTR ERV1 0 437 1 748 183 95 27 chr1 193097751 193098047 -89095617 - LTR48 LTR ERV1 0 729 471 284 265 10 29 chr1 193098047 193098147 -89095517 - LTR8 LTR ERV1 0 691 594 3989 115 10 2 chr1 193098147 193098754 -89094910 + MER41B LTR ERV1 1 612 -23 2229 187 40 55 chr1 193098753 193099357 -89094307 - LTR8 LTR ERV1 -96 595 1 * 1191 173 11 109 chr1 193099368 193099743 -89093921 - LTR49 LTR ERV1 -255 340 3 258 32 0 0 chr1 193100567 193100598 -89093066 + (CA)n Simple_repeat Simple_repeat 2 32 0 2697 253 81 17 chr1 193100924 193102160 -89091504 + L1MC/D LINE L1 3359 4760 -1386 2159 100 31 0 chr1 193102160 193102449 -89091215 + AluSp SINE Alu 1 298 -15 2697 253 81 17 chr1 193102449 193102829 -89090835 + L1MC/D LINE L1 4760 5114 -1032 2124 24 0 0 chr1 193102885 193103131 -89090533 + L1PA2 LINE L1 5909 6154 -1 702 183 14 56 chr1 193104322 193104464 -89089200 + AluJo SINE Alu 9 144 -168 2271 116 57 44 chr1 193104465 193104870 -89088794 + MSTB LTR MaLR 4 413 -13 229 280 6 63 chr1 193104872 193105047 -89088617 - LTR38B LTR ERV1 0 610 446 246 363 133 30 chr1 193106075 193106210 -89087454 - L3 LINE CR1 -15 1562 1414 274 276 207 23 chr1 193106408 193106625 -89087039 + L1MC/D LINE L1 5631 5887 -1921 287 325 98 30 chr1 193107468 193107702 -89085962 + L2 LINE L2 2709 2958 -356 618 151 14 43 chr1 193107850 193107989 -89085675 - L1MA9 LINE L1 -77 6235 6101 2432 176 21 84 chr1 193107990 193108667 -89084997 + LTR27 LTR ERV1 3 636 0 1123 203 59 3 chr1 193108671 193108961 -89084703 - L1MA9 LINE L1 -210 6102 5797 450 0 0 0 chr1 193108961 193109011 -89084653 + (TG)n Simple_repeat Simple_repeat 2 51 0 2633 135 105 38 chr1 193109011 193109515 -89084149 + MER72 LTR ERV1 185 722 0 2725 161 45 31 chr1 193110769 193111346 -89082318 + MER34C LTR ERV1 1 585 0 324 397 6 6 chr1 193111374 193111530 -89082134 - L2 LINE L2 -554 2760 2605 239 319 111 0 chr1 193111788 193111860 -89081804 + L2 LINE L2 3189 3268 -4 440 171 27 36 chr1 193112193 193112304 -89081360 - LTR54 LTR ERV1 0 510 401 681 227 7 0 chr1 193112324 193112465 -89081199 - MER57A LTR ERV1 -131 272 131 202 296 19 0 chr1 193112579 193112633 -89081031 + L3b LINE CR1 1349 1403 -180 2091 139 0 0 chr1 193113077 193113372 -89080292 - AluSx SINE Alu -14 298 4 361 86 0 35 chr1 193113374 193113432 -89080232 - AluSq/x SINE Alu -166 136 81 861 114 0 0 chr1 193113984 193114116 -89079548 + (GGAA)n Simple_repeat Simple_repeat 3 134 0 239 48 0 71 chr1 193114116 193114158 -89079506 + (GGGGA)n Simple_repeat Simple_repeat 3 41 0 689 275 43 12 chr1 193114384 193114642 -89079022 - HAL1 LINE L1 -868 1639 1374 368 301 108 57 chr1 193114680 193115116 -89078548 - HAL1 LINE L1 -2048 459 2 527 258 86 0 chr1 193115995 193116181 -89077483 - L1MC4a LINE L1 -1875 5933 5732 1842 220 85 35 chr1 193116194 193116793 -89076871 - LTR48B LTR ERV1 -13 631 3 889 141 0 0 chr1 193117263 193117384 -89076280 - FLAM_C SINE Alu -20 123 3 2294 117 3 0 chr1 193117697 193118005 -89075659 + AluSx SINE Alu 1 309 -3 1614 159 58 27 chr1 193118015 193118310 -89075354 + AluJo SINE Alu 3 306 -6 655 314 67 9 chr1 193118408 193118870 -89074794 + L1ME3A LINE L1 5401 5889 -281 406 290 152 23 chr1 193119115 193119332 -89074332 + MIR SINE MIR 14 258 -4 3702 172 62 38 chr1 193119483 193120580 -89073084 + L1MB8 LINE L1 5074 6178 0 1008 297 53 35 chr1 193121384 193121758 -89071906 - L3 LINE CR1 -67 1510 1130 354 270 230 7 chr1 193121950 193122098 -89071566 + MER5A DNA MER1_type 9 189 0 239 257 0 14 chr1 193122102 193122172 -89071492 + L1ME LINE L1 5598 5666 -455 1673 184 30 3 chr1 193122703 193123002 -89070662 - AluJo SINE Alu -5 307 1 708 306 44 33 chr1 193123153 193123424 -89070240 + L2 LINE L2 3036 3309 -4 214 360 72 9 chr1 193123803 193123914 -89069750 + L2 LINE L2 3195 3312 -1 317 157 114 0 chr1 193124030 193124100 -89069564 + L1ME4a LINE L1 5947 6024 -97 2126 105 108 15 chr1 193125500 193125843 -89067821 - THE1C LTR MaLR 0 375 1 691 230 41 36 chr1 193125937 193126133 -89067531 + MIR SINE MIR 64 260 -2 316 280 64 17 chr1 193126124 193126249 -89067415 - MIR SINE MIR -66 142 34 * 247 137 0 39 chr1 193126631 193126682 -89066982 - Alu SINE Alu -1 301 253 198 0 0 0 chr1 193126743 193126765 -89066899 + (A)n Simple_repeat Simple_repeat 1 22 0 250 233 0 50 chr1 193126765 193126825 -89066839 + MER5A DNA MER1_type 61 117 -72 216 0 0 0 chr1 193127146 193127170 -89066494 + (T)n Simple_repeat Simple_repeat 1 24 0 360 195 0 69 chr1 193127214 193127301 -89066363 + MER8 DNA MER2_type 1 81 -158 230 209 60 30 chr1 193128693 193128760 -89064904 - MER5A DNA MER1_type -2 187 119 1000 107 134 0 chr1 193128763 193128912 -89064752 - AluSg/x SINE Alu -1 308 140 2357 85 3 0 chr1 193129979 193130273 -89063391 + AluSp SINE Alu 1 295 -18 568 259 72 30 chr1 193130598 193130834 -89062830 - MIR SINE MIR -10 252 7 1745 148 13 50 chr1 193130857 193131155 -89062509 + AluJb SINE Alu 1 287 -25 2274 76 20 23 chr1 193131601 193131903 -89061761 + AluY SINE Alu 3 303 -8 229 211 284 11 chr1 193132089 193132184 -89061480 + MER20B DNA MER1_type 23 143 -640 2223 129 0 0 chr1 193132892 193133195 -89060469 - AluSx SINE Alu -9 303 1 1718 192 7 11 chr1 193133591 193133877 -89059787 + AluJb SINE Alu 1 285 -27 609 253 139 0 chr1 193134406 193134564 -89059100 - MER5A DNA MER1_type 0 189 10 252 291 0 13 chr1 193135006 193135085 -89058579 - MIR SINE MIR -2 260 183 2066 145 76 12 chr1 193135182 193135590 -89058074 - MER65A LTR ERV1 -9 436 3 521 282 92 12 chr1 193136442 193136605 -89057059 - MER5B DNA MER1_type -1 177 2 852 162 110 35 chr1 193136614 193136699 -89056965 - MER5A DNA MER1_type 0 189 112 2331 157 23 35 chr1 193136699 193137132 -89056532 + MSTC LTR MaLR 1 428 0 852 162 110 35 chr1 193137132 193137219 -89056445 - MER5A DNA MER1_type -77 112 4 2139 97 20 30 chr1 193137526 193137826 -89055838 - AluSx SINE Alu -15 297 1 1737 152 21 14 chr1 193138004 193138294 -89055370 - AluJb SINE Alu 0 312 21 472 305 20 40 chr1 193138741 193138892 -89054772 + MIR3 SINE MIR 33 180 -28 1381 148 17 25 chr1 193138896 193139132 -89054532 - AluJo SINE Alu -78 234 1 1981 125 77 8 chr1 193140774 193141125 -89052539 - THE1C LTR MaLR 0 375 1 884 241 0 62 chr1 193141647 193141871 -89051793 - MIR SINE MIR -21 241 32 1438 185 75 8 chr1 193142182 193142439 -89051225 + AluJo SINE Alu 7 284 -28 324 0 0 0 chr1 193142439 193142475 -89051189 + (CA)n Simple_repeat Simple_repeat 1 36 0 263 369 56 25 chr1 193143331 193143491 -89050173 + L3 LINE CR1 1288 1452 -125 201 292 257 0 chr1 193145665 193145778 -89047886 + MER5B DNA MER1_type 1 142 -36 207 308 15 0 chr1 193145708 193145773 -89047891 - MER5A DNA MER1_type -72 117 52 479 348 64 49 chr1 193145781 193146313 -89047351 - L2 LINE L2 -558 2756 2217 453 301 61 67 chr1 193146318 193146630 -89047034 + L2 LINE L2 2552 2861 -453 346 341 39 0 chr1 193146937 193147116 -89046548 + MER5A DNA MER1_type 1 186 -3 549 246 0 26 chr1 193148911 193149069 -89044595 - MIR SINE MIR -5 257 106 21 36 0 0 chr1 193149281 193149309 -89044355 + AT_rich Low_complexity Low_complexity 1 28 0 240 302 34 74 chr1 193150232 193150266 -89043398 - MIR SINE MIR 0 262 228 1021 219 22 22 chr1 193150266 193150490 -89043174 + MER58A DNA MER1_type 1 224 0 240 302 34 74 chr1 193150490 193150604 -89043060 - MIR SINE MIR -34 228 120 21 0 0 0 chr1 193150657 193150678 -89042986 + AT_rich Low_complexity Low_complexity 1 21 0 354 302 63 74 chr1 193150863 193151052 -89042612 + MER5A DNA MER1_type 2 188 -1 1821 155 118 14 chr1 193151218 193151573 -89042091 + MSTD LTR MaLR 5 396 0 598 192 0 15 chr1 193152103 193152233 -89041431 + MSTD LTR MaLR 1 128 -268 547 214 23 102 chr1 193152247 193152462 -89041202 + MSTD LTR MaLR 260 457 0 629 283 136 42 chr1 193152463 193152795 -89040869 - LTR16B LTR ERVL -101 363 1 1919 164 52 9 chr1 193152952 193153281 -89040383 - MER61A LTR ERV1 0 343 1 20828 103 26 10 chr1 193153281 193156896 -89036768 - MER61A-int LTR ERV1 0 6066 1655 300 70 0 0 chr1 193156894 193156937 -89036727 - MER61A-int LTR ERV1 -3855 1362 1320 * 2151 166 34 15 chr1 193156930 193157573 -89036091 - MER61A-int LTR ERV1 -4440 777 1 1996 143 52 9 chr1 193157573 193157902 -89035762 - MER61A LTR ERV1 0 343 1 349 270 80 44 chr1 193158087 193158224 -89035440 + MIR3 SINE MIR 67 208 0 4743 68 0 0 chr1 193158340 193158931 -89034733 + LTR10C LTR ERV1 1 591 0 488 245 19 113 chr1 193158931 193159083 -89034581 + LTR10C-int LTR ERV1 5 115 -6534 225 0 0 0 chr1 193159083 193159108 -89034556 + (CA)n Simple_repeat Simple_repeat 2 26 0 488 245 19 113 chr1 193159108 193159265 -89034399 + LTR10C-int LTR ERV1 115 285 -6364 324 331 0 13 chr1 193160093 193160247 -89033417 + GA-rich Low_complexity Low_complexity 1 152 0 3357 104 33 7 chr1 193160272 193160875 -89032789 + LTR10C-int LTR ERV1 1919 2537 -4359 5491 285 40 35 chr1 193161063 193163337 -89030327 + LTR10C-int LTR ERV1 4363 6647 -2 4622 67 0 13 chr1 193163338 193163935 -89029729 + LTR10C LTR ERV1 1 589 -2 940 222 97 11 chr1 193163946 193164256 -89029408 - MER57A LTR ERV1 0 403 102 532 103 34 8 chr1 193164256 193164373 -89029291 + (TA)n Simple_repeat Simple_repeat 2 121 0 287 209 66 0 chr1 193164428 193164519 -89029145 - MER57A-int LTR ERV1 0 7537 7441 1783 175 6 32 chr1 193164659 193164973 -89028691 + AluJb SINE Alu 1 306 -6 1251 249 16 49 chr1 193166657 193167023 -89026641 - MER57A-int LTR ERV1 -1359 6178 5825 1897 85 253 159 chr1 193167305 193167834 -89025830 + LTR12 LTR ERV1 3 581 -133 2348 98 10 0 chr1 193167892 193168198 -89025466 - AluSc SINE Alu 0 309 1 2713 211 58 59 chr1 193168228 193169029 -89024635 - MER57A-int LTR ERV1 -1494 3442 3270 1696 206 13 0 chr1 193169029 193169335 -89024329 + AluJb SINE Alu 1 310 -2 2713 211 58 59 chr1 193169335 193170611 -89023053 - MER57A-int LTR ERV1 -1666 3270 1995 264 183 117 0 chr1 193170736 193170774 -89022890 - MER34 LTR ERV1 0 542 510 227 29 57 0 chr1 193170774 193170809 -89022855 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 264 183 117 0 chr1 193170809 193170830 -89022834 - MER34 LTR ERV1 -32 510 476 345 200 80 30 chr1 193170830 193170930 -89022734 - MER34 LTR ERV1 -305 237 133 1163 198 109 43 chr1 193170930 193171452 -89022212 - MER57A-int LTR ERV1 -3316 1807 1027 716 205 0 0 chr1 193171463 193171585 -89022079 + FLAM_C SINE Alu 1 122 -21 811 253 149 11 chr1 193172047 193172308 -89021356 - MER57A-int LTR ERV1 -7238 299 3 753 227 82 93 chr1 193172310 193172676 -89020988 - MER57A LTR ERV1 0 403 42 207 154 0 39 chr1 193172676 193172728 -89020936 + (TTAA)n Simple_repeat Simple_repeat 3 52 0 198 229 49 16 chr1 193172826 193172887 -89020777 - MIR SINE MIR -128 134 72 250 296 28 70 chr1 193173242 193173293 -89020371 - MIR SINE MIR -48 160 108 1812 144 31 69 chr1 193173293 193173683 -89019981 + THE1C LTR MaLR 1 375 0 250 296 28 70 chr1 193173683 193173773 -89019891 - MIR SINE MIR -100 108 23 847 180 0 7 chr1 193173985 193174124 -89019540 + AluJb SINE Alu 145 282 -30 409 253 11 0 chr1 193174841 193174932 -89018732 - L2 LINE L2 -1 3271 3180 188 289 9 79 chr1 193174970 193175084 -89018580 - MIR SINE MIR -42 220 115 361 169 15 0 chr1 193175153 193175218 -89018446 + L1PA8A LINE L1 6 71 -5804 4376 76 22 19 chr1 193175220 193176253 -89017411 - MER11A LTR ERVK 0 1266 1 24369 137 16 8 chr1 193176253 193182541 -89011123 + L1PA8A LINE L1 68 6482 -1 215 300 0 0 chr1 193183120 193183170 -89010494 + L3 LINE CR1 1526 1575 -2 6161 111 3 19 chr1 193183228 193184411 -89009253 + L1PB1 LINE L1 4986 6150 -1 739 285 72 26 chr1 193184475 193184864 -89008800 - MLT1I LTR MaLR 0 409 3 228 111 0 0 chr1 193185644 193185680 -89007984 + (CAT)n Simple_repeat Simple_repeat 1 36 0 3402 100 4 4 chr1 193185801 193186300 -89007364 - L1PB1 LINE L1 0 6151 5653 576 106 0 0 chr1 193186302 193186387 -89007277 - L1PBa LINE L1 -5734 1129 1045 3334 88 40 0 chr1 193186392 193186890 -89006774 - L1PBa LINE L1 -6345 518 1 954 150 6 6 chr1 193186902 193187069 -89006595 - L1MB5 LINE L1 -36 6138 5972 316 377 8 0 chr1 193187072 193187202 -89006462 - MIR SINE MIR -112 150 20 22 35 0 0 chr1 193187288 193187317 -89006347 + AT_rich Low_complexity Low_complexity 1 29 0 299 227 99 57 chr1 193238681 193238822 -88954842 - MER117 DNA MER1_type -34 163 17 185 341 24 12 chr1 193238971 193239053 -88954611 + MIR SINE MIR 21 103 -105 2091 100 62 0 chr1 193239872 193240162 -88953502 + AluSx SINE Alu 1 308 -4 208 260 20 0 chr1 193240444 193240494 -88953170 + MIR3 SINE MIR 151 201 -7 243 61 0 0 chr1 193240534 193240567 -88953097 + (CA)n Simple_repeat Simple_repeat 2 34 0 825 122 0 43 chr1 193240825 193240964 -88952700 + FLAM_C SINE Alu 1 133 0 1408 102 0 0 chr1 193241376 193241553 -88952111 + AluSx SINE Alu 1 177 -135 257 139 0 0 chr1 193241728 193241771 -88951893 - L2 LINE L2 -1 3312 3270 222 369 0 0 chr1 193241853 193241937 -88951727 - L3b LINE CR1 -351 1232 1149 208 128 77 0 chr1 193241985 193242024 -88951640 - L2 LINE L2 -87 3226 3185 368 291 88 14 chr1 193242509 193242657 -88951007 - MIR SINE MIR -92 170 12 228 278 0 0 chr1 193243535 193243589 -88950075 + (TA)n Simple_repeat Simple_repeat 2 55 0 583 145 50 31 chr1 193243593 193243752 -88949912 + Charlie5 DNA MER1_type 2457 2618 0 304 265 60 0 chr1 193243768 193243831 -88949833 + MER5A DNA MER1_type 9 80 -109 2168 89 0 32 chr1 193243831 193244146 -88949518 + AluY SINE Alu 1 305 -6 304 265 60 0 chr1 193244146 193244165 -88949499 + MER5A DNA MER1_type 80 96 -93 208 200 147 107 chr1 193244251 193244332 -88949332 - MER5C DNA MER1_type -2 322 246 2479 74 0 3 chr1 193244332 193244644 -88949020 + AluY SINE Alu 1 311 0 208 200 147 107 chr1 193244644 193244712 -88948952 - MER5C DNA MER1_type -78 246 167 575 210 24 24 chr1 193245494 193245618 -88948046 - MER5C DNA MER1_type -200 124 1 22 0 0 0 chr1 193245921 193245943 -88947721 + AT_rich Low_complexity Low_complexity 1 22 0 441 337 89 28 chr1 193246183 193246575 -88947089 + L2 LINE L2 2431 2846 -468 1922 155 10 3 chr1 193247304 193247608 -88946056 - AluJb SINE Alu -6 306 1 2071 110 49 29 chr1 193248039 193248384 -88945280 + THE1B LTR MaLR 1 352 -12 1899 72 4 4 chr1 193248392 193248670 -88944994 + THE1B-int LTR MaLR 1 278 -1302 269 186 0 12 chr1 193250184 193250270 -88943394 + CT-rich Low_complexity Low_complexity 2 86 0 9376 79 23 3 chr1 193250905 193252198 -88941466 + THE1B-int LTR MaLR 261 1579 -1 2067 138 51 28 chr1 193252199 193252555 -88941109 + THE1B LTR MaLR 1 364 0 1615 177 13 32 chr1 193252729 193253040 -88940624 - AluJo SINE Alu -6 306 2 2011 109 57 0 chr1 193253107 193253390 -88940274 + AluY SINE Alu 1 299 -12 1357 156 0 14 chr1 193253490 193253701 -88939963 - AluJb SINE Alu -18 294 87 24 32 0 0 chr1 193253703 193253734 -88939930 + AT_rich Low_complexity Low_complexity 1 31 0 277 337 51 10 chr1 193254255 193254353 -88939311 + MIR SINE MIR 16 117 -91 328 344 117 0 chr1 193255559 193255713 -88937951 - L3 LINE CR1 -9 1568 1397 225 318 111 0 chr1 193255822 193255885 -88937779 - L2 LINE L2 -17 3255 3186 268 364 116 0 chr1 193256088 193256217 -88937447 + MIR3 SINE MIR 14 157 -51 187 255 64 0 chr1 193256321 193256368 -88937296 + L3 LINE CR1 1526 1575 -2 372 263 88 50 chr1 193256478 193256638 -88937026 + MARNA DNA Mariner 366 531 -55 23 0 0 0 chr1 193256650 193256673 -88936991 + AT_rich Low_complexity Low_complexity 1 23 0 304 311 89 56 chr1 193257358 193257538 -88936126 + L2 LINE L2 3078 3263 -9 779 299 20 16 chr1 193258532 193258776 -88934888 - MIR SINE MIR -3 259 15 267 292 69 28 chr1 193260352 193260496 -88933168 - MIR SINE MIR -42 220 71 973 207 6 0 chr1 193261830 193262004 -88931660 - FAM SINE Alu 0 175 1 369 93 0 0 chr1 193262489 193262543 -88931121 + (A)n Simple_repeat Simple_repeat 1 54 0 969 217 8 35 chr1 193262903 193263161 -88930503 + MER58B DNA MER1_type 85 335 -6 1969 158 30 0 chr1 193263679 193263982 -88929682 + AluJo SINE Alu 1 312 0 22 0 0 0 chr1 193263994 193264016 -88929648 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr1 193264110 193264147 -88929517 + AT_rich Low_complexity Low_complexity 1 37 0 416 225 0 0 chr1 193266214 193266303 -88927361 + MER89 LTR ERV1 1 89 -470 * 1223 214 36 7 chr1 193266276 193266502 -88927162 + MER89 LTR ERV1 197 434 -125 228 35 0 0 chr1 193266502 193266531 -88927133 + (CA)n Simple_repeat Simple_repeat 2 30 0 1223 214 36 7 chr1 193266531 193266579 -88927085 + MER89 LTR ERV1 434 479 -80 22 35 0 0 chr1 193266636 193266665 -88926999 + AT_rich Low_complexity Low_complexity 1 29 0 323 293 19 57 chr1 193266671 193266828 -88926836 - MIR SINE MIR -64 198 48 738 261 10 43 chr1 193267627 193267834 -88925830 + MIR SINE MIR 63 262 0 200 300 93 40 chr1 193267882 193268032 -88925632 + L2 LINE L2 2272 2429 -885 1606 177 51 6 chr1 193268095 193268445 -88925219 + LTR37A LTR ERV1 60 425 -1 648 276 111 19 chr1 193268588 193268823 -88924841 + MIR SINE MIR 9 260 -2 414 296 57 11 chr1 193269656 193269832 -88923832 + L1MC/D LINE L1 5541 5724 -2084 598 330 53 57 chr1 193270120 193270383 -88923281 - MER4C-int LTR ERV1 -1750 2897 2634 2251 109 3 0 chr1 193270383 193270677 -88922987 - AluSg SINE Alu -15 295 1 598 330 53 57 chr1 193270677 193271174 -88922490 - MER4C-int LTR ERV1 -2013 2634 2140 2751 10 0 3 chr1 193271320 193271628 -88922036 + AluYa5 SINE Alu 1 307 -4 295 279 47 64 chr1 193272161 193272396 -88921268 - MER4C-int LTR ERV1 -2983 4773 4101 287 245 31 31 chr1 193272461 193272559 -88921105 - MER4C-int LTR ERV1 -3323 3478 3381 280 313 27 27 chr1 193272654 193272878 -88920786 - MER4C-int LTR ERV1 -4372 4054 3831 927 298 51 25 chr1 193273237 193273720 -88919944 - MER4C-int LTR ERV1 -3273 3818 155 2121 120 3 0 chr1 193274795 193275087 -88918577 + AluSg SINE Alu 3 295 -15 625 203 73 45 chr1 193276657 193277167 -88916497 - MER4C-int LTR ERV1 -5929 669 1 419 157 264 14 chr1 193277169 193277309 -88916355 - MER4C LTR ERV1 0 465 291 1202 127 133 51 chr1 193277385 193277701 -88915963 - MER4A LTR ERV1 -322 342 1 1625 227 68 59 chr1 193277733 193278340 -88915324 - LTR9 LTR ERV1 0 612 1 381 233 0 0 chr1 193278359 193278432 -88915232 + L1M2 LINE L1 1095 1167 -5682 483 173 12 105 chr1 193278717 193278879 -88914785 + MLT1J1 LTR MaLR 10 156 -290 1115 268 86 0 chr1 193278967 193279247 -88914417 + L1M2 LINE L1 896 1199 -5650 3861 173 8 26 chr1 193279259 193280131 -88913533 + L1M2 LINE L1 1421 2276 -4573 * 12998 191 20 29 chr1 193280123 193283107 -88910557 + L1M2 LINE L1 2764 5717 -1131 2412 99 0 3 chr1 193283107 193283411 -88910253 + AluSc SINE Alu 1 303 -6 12998 191 20 29 chr1 193283411 193283700 -88909964 + L1M2 LINE L1 5717 6007 -841 1693 209 3 3 chr1 193283711 193284013 -88909651 + AluJb SINE Alu 1 302 -10 306 0 0 0 chr1 193284013 193284047 -88909617 + (GGA)n Simple_repeat Simple_repeat 1 34 0 1112 118 114 88 chr1 193284106 193284334 -88909330 + LTR12 LTR ERV1 1 234 -480 386 168 84 99 chr1 193284421 193284552 -88909112 + LTR30 LTR ERV1 524 723 -71 681 109 0 0 chr1 193284552 193284644 -88909020 + LTR12 LTR ERV1 492 583 -131 33527 108 10 9 chr1 193284666 193290207 -88903457 + HERV9 LTR ERV1 59 5692 -2707 9619 115 11 12 chr1 193290207 193291622 -88902042 + HERV9 LTR ERV1 6982 8395 -4 289 211 0 0 chr1 193291626 193291678 -88901986 + LTR30 LTR ERV1 1 52 -670 932 157 45 52 chr1 193291678 193291946 -88901718 + LTR12 LTR ERV1 100 2032 -406 317 233 11 0 chr1 193291948 193292038 -88901626 + LTR30 LTR ERV1 553 643 -79 721 99 0 10 chr1 193292040 193292141 -88901523 + LTR12 LTR ERV1 615 714 0 2658 82 15 18 chr1 193292164 193292507 -88901157 - L1PA8A LINE L1 -1 6130 5789 614 263 166 5 chr1 193292522 193292727 -88900937 + MER102a DNA MER1_type 78 315 -15 2136 108 0 0 chr1 193294238 193294536 -88899128 + AluSx SINE Alu 6 303 0 472 305 26 7 chr1 193294711 193294862 -88898802 - MIR3 SINE MIR -25 183 30 237 250 47 0 chr1 193295262 193295326 -88898338 + L2 LINE L2 3206 3272 0 371 341 98 5 chr1 193295664 193295869 -88897795 - MIR SINE MIR -17 245 22 275 135 0 0 chr1 193297220 193297257 -88896407 - MER46A DNA MER2_type 0 236 200 2169 102 7 3 chr1 193297257 193297568 -88896096 + AluSx SINE Alu 1 312 0 837 109 0 25 chr1 193297602 193297721 -88895943 + AluJb SINE Alu 11 126 -186 1027 197 43 0 chr1 193297738 193297926 -88895738 - MER46A DNA MER2_type -38 198 3 898 241 22 77 chr1 193297928 193298048 -88895616 - MIR SINE MIR -2 260 135 3365 166 170 28 chr1 193298048 193298771 -88894893 - LTR1B LTR ERV1 0 826 1 898 241 22 77 chr1 193298771 193298924 -88894740 - MIR SINE MIR -127 135 2 833 132 0 0 chr1 193299930 193300044 -88893620 + FLAM_C SINE Alu 14 127 -16 319 274 41 34 chr1 193300391 193300537 -88893127 - L1ME4a LINE L1 -3 6118 5972 2032 180 0 17 chr1 193300546 193300896 -88892768 + MER2 DNA MER2_type 1 344 0 415 307 127 67 chr1 193300936 193301203 -88892461 - L2 LINE L2 -1 3271 2989 275 310 125 71 chr1 193301197 193301565 -88892099 - L2 LINE L2 -1389 1925 1538 * 2001 142 0 0 chr1 193301794 193302075 -88891589 + AluSx SINE Alu 1 281 -31 2128 141 0 0 chr1 193302605 193302902 -88890762 + AluSx SINE Alu 1 297 -15 186 313 113 25 chr1 193303143 193303223 -88890441 + MIR SINE MIR 32 118 -90 28 0 0 0 chr1 193303702 193303730 -88889934 + AT_rich Low_complexity Low_complexity 1 28 0 1628 162 44 4 chr1 193304063 193304360 -88889304 + AluSg SINE Alu 1 308 0 355 265 59 35 chr1 193304399 193304569 -88889095 - MARNA DNA Mariner -155 431 258 1935 142 3 0 chr1 193305059 193305348 -88888316 - AluJb SINE Alu 0 312 23 1389 222 26 92 chr1 193305625 193306093 -88887571 - LTR56 LTR ERV1 0 445 9 183 321 89 58 chr1 193306363 193306553 -88887111 + L2 LINE L2 2920 3115 -157 443 266 46 0 chr1 193306557 193306666 -88886998 + MIR SINE MIR 3 116 -146 238 333 11 0 chr1 193306766 193306856 -88886808 + MIR SINE MIR 110 200 -62 1800 156 11 4 chr1 193306861 193307137 -88886527 + AluJb SINE Alu 6 283 -29 255 187 53 53 chr1 193307146 193307221 -88886443 + MIR SINE MIR 185 259 -3 2161 131 0 7 chr1 193307261 193307566 -88886098 - AluSq SINE Alu -10 303 1 2303 98 3 0 chr1 193307592 193307888 -88885776 + AluSx SINE Alu 1 297 -15 2551 93 17 11 chr1 193309636 193309991 -88883673 - THE1B LTR MaLR -7 357 1 286 333 21 0 chr1 193310407 193310500 -88883164 - L2 LINE L2 -977 2337 2243 23 0 0 0 chr1 193311571 193311594 -88882070 + AT_rich Low_complexity Low_complexity 1 23 0 1864 175 0 0 chr1 193312401 193312747 -88880917 - AluSq SINE Alu 0 346 1 206 171 24 0 chr1 193312887 193312928 -88880736 + T-rich Low_complexity Low_complexity 1 42 0 1015 136 12 24 chr1 193313056 193313225 -88880439 - AluSg/x SINE Alu -22 288 122 517 286 136 10 chr1 193314438 193314644 -88879020 + MIR SINE MIR 19 250 -12 1696 183 7 0 chr1 193315836 193316125 -88877539 - AluJo SINE Alu -21 291 1 252 122 0 0 chr1 193316174 193316215 -88877449 + (CA)n Simple_repeat Simple_repeat 2 42 0 27 0 0 0 chr1 193316234 193316261 -88877403 + AT_rich Low_complexity Low_complexity 1 27 0 295 293 50 40 chr1 193316737 193316836 -88876828 + MIR3 SINE MIR 4 103 -105 2639 258 73 44 chr1 193316892 193318170 -88875494 + L2 LINE L2 2000 3313 0 31 26 0 0 chr1 193319829 193319867 -88873797 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 193320113 193320134 -88873530 + AT_rich Low_complexity Low_complexity 1 21 0 298 385 10 10 chr1 193321088 193321288 -88872376 + L2 LINE L2 2508 2707 -607 2780 81 28 11 chr1 193321296 193321654 -88872010 + THE1B LTR MaLR 1 364 0 758 208 104 19 chr1 193321770 193321924 -88871740 - AluJo SINE Alu -45 267 101 837 171 0 59 chr1 193321925 193322077 -88871587 - FLAM_C SINE Alu 0 143 1 484 217 0 0 chr1 193322099 193322182 -88871482 - AluJ/FLAM SINE Alu -226 86 4 941 302 55 12 chr1 193322275 193322619 -88871045 - LTR33 LTR ERVL -158 363 5 202 246 46 154 chr1 193322622 193322685 -88870979 + L2 LINE L2 2715 2759 -555 2244 120 7 0 chr1 193322685 193322984 -88870680 + AluSx SINE Alu 1 301 -11 202 246 46 154 chr1 193322984 193323050 -88870614 + L2 LINE L2 2759 2830 -484 458 269 264 0 chr1 193323636 193323818 -88869846 + MIR SINE MIR 8 237 -25 2543 133 5 19 chr1 193325065 193325434 -88868230 + THE1B LTR MaLR 1 364 0 1500 174 110 4 chr1 193325608 193325872 -88867792 - AluJb SINE Alu -20 292 1 840 294 108 38 chr1 193325899 193326270 -88867394 - L2 LINE L2 0 3313 2917 827 185 15 0 chr1 193326327 193326457 -88867207 + FLAM_C SINE Alu 1 132 -1 2505 112 56 33 chr1 193326470 193326700 -88866964 + L1PB4 LINE L1 5353 5599 -557 2327 101 3 0 chr1 193326700 193326998 -88866666 + AluSp SINE Alu 1 299 -14 2505 112 56 33 chr1 193326998 193327194 -88866470 + L1PB4 LINE L1 5599 5789 -367 219 204 0 0 chr1 193327194 193327248 -88866416 + (TG)n Simple_repeat Simple_repeat 1 54 0 2205 102 9 126 chr1 193327248 193327467 -88866197 + L1PB4 LINE L1 5777 5923 -233 2467 118 32 32 chr1 193327467 193327841 -88865823 - THE1C LTR MaLR -1 374 1 2205 102 9 126 chr1 193327841 193328051 -88865613 + L1PB4 LINE L1 5923 6156 0 25 0 0 0 chr1 193328136 193328161 -88865503 + AT_rich Low_complexity Low_complexity 1 25 0 1627 197 0 7 chr1 193328568 193328862 -88864802 + AluJo SINE Alu 13 304 -8 1892 176 6 0 chr1 193328995 193329307 -88864357 - LTR26 LTR ERV1 -2 601 288 749 129 0 26 chr1 193329326 193329442 -88864222 - FLAM_C SINE Alu 0 143 31 1797 148 0 30 chr1 193329458 193329761 -88863903 + AluJo SINE Alu 1 294 -18 248 180 0 20 chr1 193329843 193329893 -88863771 - Alu SINE Alu -135 168 120 * 1679 138 78 0 chr1 193329879 193330148 -88863516 - LTR26 LTR ERV1 -313 290 1 2808 104 3 6 chr1 193330594 193330959 -88862705 - THE1B LTR MaLR 0 364 1 794 217 6 19 chr1 193331234 193331395 -88862269 + FRAM SINE Alu 1 159 -7 353 311 94 55 chr1 193332557 193332985 -88860679 + L2 LINE L2 2712 3239 -74 1943 138 7 7 chr1 193333026 193333324 -88860340 - AluSx SINE Alu -14 298 1 823 189 0 0 chr1 193333738 193333886 -88859778 - AluSg/x SINE Alu -28 284 137 31 68 0 0 chr1 193333922 193333981 -88859683 + AT_rich Low_complexity Low_complexity 1 59 0 333 0 0 0 chr1 193334328 193334365 -88859299 + (TG)n Simple_repeat Simple_repeat 1 37 0 219 36 0 0 chr1 193334364 193334392 -88859272 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1945 131 30 10 chr1 193334624 193334921 -88858743 + AluSq SINE Alu 1 303 -10 823 240 57 9 chr1 193335369 193335598 -88858066 - MIR SINE MIR -21 241 2 582 203 67 146 chr1 193335757 193335889 -88857775 + LTR37B LTR ERV1 97 238 -230 1624 218 3 0 chr1 193335889 193336183 -88857481 + AluJo SINE Alu 6 300 -12 582 203 67 146 chr1 193336183 193336454 -88857210 + LTR37B LTR ERV1 238 468 0 1037 124 6 51 chr1 193336616 193336794 -88856870 - AluJo SINE Alu -7 305 136 718 197 0 0 chr1 193337151 193337283 -88856381 - AluJo SINE Alu -169 133 2 2116 123 0 0 chr1 193337571 193337856 -88855808 + AluSg1 SINE Alu 1 285 -24 31960 110 10 61 chr1 193338444 193343827 -88849837 + L1PA7 LINE L1 2 4986 -1168 2346 92 0 0 chr1 193343827 193344121 -88849543 + AluY SINE Alu 12 305 -6 31960 110 10 61 chr1 193344121 193345230 -88848434 + L1PA7 LINE L1 4986 6150 -4 230 211 19 0 chr1 193345230 193345282 -88848382 + (TA)n Simple_repeat Simple_repeat 2 54 0 1916 134 27 7 chr1 193345559 193345857 -88847807 - AluSx SINE Alu -8 304 1 1645 188 3 29 chr1 193346620 193346934 -88846730 + AluJo SINE Alu 1 306 -6 25 0 0 0 chr1 193346959 193346984 -88846680 + AT_rich Low_complexity Low_complexity 1 25 0 1445 186 0 8 chr1 193347124 193347376 -88846288 + AluJo SINE Alu 61 310 -2 296 277 215 37 chr1 193347529 193347771 -88845893 + HAL1 LINE L1 2 286 -2221 614 231 0 0 chr1 193347860 193347990 -88845674 - FLAM_A SINE Alu -3 130 1 986 259 125 67 chr1 193348032 193348354 -88845310 + HAL1 LINE L1 625 927 -1580 2168 118 0 40 chr1 193348354 193348675 -88844989 + AluSg SINE Alu 2 309 -1 986 259 125 67 chr1 193348675 193348984 -88844680 + HAL1 LINE L1 927 1293 -1214 * 5481 51 0 1 chr1 193348981 193349643 -88844021 + L1PA5 LINE L1 5321 5981 -173 1853 112 14 25 chr1 193349677 193349954 -88843710 + AluSx SINE Alu 15 288 -24 252 182 73 0 chr1 193350061 193350116 -88843548 - L2 LINE L2 -996 2318 2260 1650 159 7 34 chr1 193350812 193351108 -88842556 + AluJo SINE Alu 1 288 -24 2025 148 67 28 chr1 193351179 193351612 -88842052 + LTR7 LTR ERV1 1 450 0 216 335 18 72 chr1 193351615 193351782 -88841882 - L2 LINE L2 -199 3073 2916 579 242 90 49 chr1 193352012 193352188 -88841476 - L1ME1 LINE L1 -39 6139 5925 2147 142 0 3 chr1 193352188 193352498 -88841166 - AluSx SINE Alu -3 309 1 579 242 90 49 chr1 193352498 193352588 -88841076 - L1ME1 LINE L1 -253 5925 5840 1446 104 41 5 chr1 193352589 193352810 -88840854 + LTR26B LTR ERV1 1 229 -302 43358 33 22 1 chr1 193352810 193358821 -88834843 + L1PA2 LINE L1 36 6174 0 2237 139 18 0 chr1 193358867 193359204 -88834460 + LTR26B LTR ERV1 189 531 0 2618 187 62 32 chr1 193359205 193359834 -88833830 - L1ME1 LINE L1 -328 5838 5187 1059 164 0 0 chr1 193359944 193360103 -88833561 + AluJ SINE Alu 1 159 -153 3735 142 158 26 chr1 193360104 193360830 -88832834 - LTR12 LTR ERV1 0 826 5 2397 196 34 34 chr1 193360867 193361464 -88832200 - pTR5 LTR ERV1 -1097 1341 745 942 135 14 14 chr1 193361464 193361612 -88832052 + AluJ SINE Alu 155 302 -10 527 288 40 66 chr1 193361613 193361915 -88831749 - L2 LINE L2 -738 2576 2283 2252 118 0 0 chr1 193361967 193362264 -88831400 - AluSx SINE Alu -15 297 1 381 283 97 0 chr1 193362264 193362377 -88831287 - L1MC/D LINE L1 -2144 5664 5541 1124 61 0 0 chr1 193362383 193362514 -88831150 + AluSg SINE Alu 1 131 -179 259 209 88 3 chr1 193362642 193362758 -88830906 - L1M1 LINE L1 -866 5431 5305 403 368 79 5 chr1 193362763 193363141 -88830523 - L1MC/D LINE L1 -860 5286 4881 1201 179 143 16 chr1 193363213 193363464 -88830200 - AluJo SINE Alu -21 291 9 1776 187 10 3 chr1 193363496 193363795 -88829869 - AluJo SINE Alu -11 301 1 608 262 29 104 chr1 193364729 193364858 -88828806 - MIR SINE MIR 0 262 125 2159 124 0 10 chr1 193364858 193365157 -88828507 - AluSq SINE Alu -17 296 1 608 262 29 104 chr1 193365157 193365213 -88828451 - MIR SINE MIR -137 125 66 2129 142 0 10 chr1 193365213 193365546 -88828118 + AluSx SINE Alu 1 312 0 608 262 29 104 chr1 193365546 193365638 -88828026 - MIR SINE MIR -196 66 5 1860 189 0 0 chr1 193365844 193366150 -88827514 + AluJo SINE Alu 1 306 -6 832 237 0 0 chr1 193366164 193366320 -88827344 + FRAM SINE Alu 6 161 -15 23 0 0 0 chr1 193366492 193366515 -88827149 + AT_rich Low_complexity Low_complexity 1 23 0 2268 111 0 0 chr1 193366897 193367195 -88826469 + AluSx SINE Alu 2 299 -13 476 349 8 38 chr1 193367678 193367913 -88825751 + L3 LINE CR1 990 1217 -360 746 305 144 24 chr1 193368015 193368592 -88825072 + L2 LINE L2 96 741 -2573 1409 194 0 4 chr1 193368646 193368883 -88824781 - AluJb SINE Alu -76 236 1 1009 304 118 32 chr1 193368973 193369157 -88824507 + L2 LINE L2 2153 2320 -993 2158 136 0 3 chr1 193369157 193369458 -88824206 - AluSq SINE Alu -13 300 1 1009 304 118 32 chr1 193369458 193369703 -88823961 + L2 LINE L2 2320 2543 -770 4646 83 85 2 chr1 193369703 193370338 -88823326 - LTR12 LTR ERV1 0 688 1 1009 304 118 32 chr1 193370338 193370964 -88822700 + L2 LINE L2 2543 3313 0 1358 62 193 0 chr1 193372016 193372208 -88821456 + AluY SINE Alu 83 311 0 2241 125 3 0 chr1 193372451 193372762 -88820902 - AluSx SINE Alu 0 312 1 648 235 39 147 chr1 193373272 193373619 -88820045 - Charlie8 DNA MER1_type -70 271 104 2427 101 0 0 chr1 193373619 193373925 -88819739 - AluSc SINE Alu -2 307 2 648 235 39 147 chr1 193373925 193374019 -88819645 - Charlie8 DNA MER1_type -237 104 1 1884 154 18 0 chr1 193374434 193374720 -88818944 + AluSx SINE Alu 4 294 -18 1371 168 5 0 chr1 193374782 193375002 -88818662 - AluJb SINE Alu -7 305 85 4450 128 36 36 chr1 193375705 193375976 -88817688 + LTR19C LTR ERV1 1 271 -508 2530 48 0 0 chr1 193375976 193376271 -88817393 - AluY SINE Alu -16 295 1 4450 128 36 36 chr1 193376271 193376778 -88816886 + LTR19C LTR ERV1 270 779 0 728 177 92 14 chr1 193376818 193376881 -88816783 - AluJb SINE Alu -9 303 246 4894 101 1 8 chr1 193376881 193377545 -88816119 - PABL_A LTR ERV1 0 660 1 728 177 92 14 chr1 193377545 193377622 -88816042 - AluJb SINE Alu -66 246 152 911 140 89 67 chr1 193377623 193378022 -88815642 - LTR7 LTR ERV1 -1 449 1 823 153 0 0 chr1 193378033 193378157 -88815507 - FLAM_C SINE Alu -5 138 15 1536 152 75 75 chr1 193378420 193378795 -88814869 - THE1C LTR MaLR 0 375 1 941 116 0 8 chr1 193379007 193379136 -88814528 + FLAM_C SINE Alu 1 128 -15 329 115 19 0 chr1 193379156 193379208 -88814456 + HsTC2 DNA Tc2 1846 1898 0 660 245 65 65 chr1 193379211 193379505 -88814159 - L2 LINE L2 -609 2705 2412 307 315 9 9 chr1 193379519 193379627 -88814037 + MIR3 SINE MIR 53 160 -48 669 230 24 0 chr1 193379784 193379910 -88813754 + FLAM_A SINE Alu 1 129 -4 1923 217 80 75 chr1 193379911 193380314 -88813350 + L1M1 LINE L1 3157 3556 -4009 2360 88 3 0 chr1 193380314 193380611 -88813053 + AluSp SINE Alu 6 303 -10 1923 217 80 75 chr1 193380611 193380665 -88812999 + L1M1 LINE L1 3556 3608 -3957 2495 31 41 0 chr1 193380665 193380956 -88812708 + AluY SINE Alu 1 303 -8 1923 217 80 75 chr1 193380956 193381402 -88812262 + L1M1 LINE L1 3608 4042 -3523 1549 85 90 0 chr1 193381402 193381613 -88812051 + MER30 DNA MER1_type 1 230 0 1923 217 80 75 chr1 193381613 193381753 -88811911 + L1M1 LINE L1 4042 4180 -3385 1966 119 61 17 chr1 193381755 193382049 -88811615 + AluSx SINE Alu 3 309 -3 15312 190 26 25 chr1 193382072 193383864 -88809800 + L1PB1 LINE L1 2 1791 -5076 6152 118 23 28 chr1 193383864 193384823 -88808841 - LTR13 LTR ERVK 0 954 1 15312 190 26 25 chr1 193384823 193385449 -88808215 + L1PB1 LINE L1 1791 2415 -4452 2204 119 0 3 chr1 193385449 193385752 -88807912 - AluSg SINE Alu -8 302 1 15312 190 26 25 chr1 193385752 193386428 -88807236 + L1PB1 LINE L1 2415 3089 -3778 1530 150 119 8 chr1 193386428 193386712 -88806952 + AluSg1 SINE Alu 1 313 0 15312 190 26 25 chr1 193386712 193387158 -88806506 + L1PB1 LINE L1 3089 3533 -3334 2056 137 7 0 chr1 193387158 193387450 -88806214 + AluSp SINE Alu 1 294 -19 15312 190 26 25 chr1 193387450 193388188 -88805476 + L1PB1 LINE L1 3533 4269 -2598 2234 93 3 3 chr1 193388188 193388477 -88805187 + AluSc SINE Alu 1 289 -20 15312 190 26 25 chr1 193388477 193390176 -88803488 + L1PB1 LINE L1 4269 5965 -902 1695 170 7 0 chr1 193390176 193390476 -88803188 + AluJb SINE Alu 5 306 0 15312 190 26 25 chr1 193390476 193390522 -88803142 + L1PB1 LINE L1 5965 6009 -858 2225 113 0 7 chr1 193390522 193390831 -88802833 - AluSg SINE Alu -3 307 1 15312 190 26 25 chr1 193390831 193391608 -88802056 + L1PB1 LINE L1 6009 6829 -38 510 286 6 22 chr1 193391576 193391754 -88801910 + L1 LINE L1 3276 3450 -3412 * 1731 167 35 0 chr1 193391942 193392230 -88801434 + AluSx SINE Alu 1 298 -14 34 42 0 0 chr1 193392492 193392540 -88801124 + AT_rich Low_complexity Low_complexity 1 48 0 8884 165 41 102 chr1 193392540 193392913 -88800751 + L1 LINE L1 3471 3865 -2997 5525 100 33 16 chr1 193392913 193393680 -88799984 - LTR17 LTR ERV1 0 780 1 8884 165 41 102 chr1 193393680 193394258 -88799406 + L1 LINE L1 3865 4477 -2385 1917 148 34 0 chr1 193394258 193394556 -88799108 - AluSx SINE Alu -4 308 1 8884 165 41 102 chr1 193394556 193394989 -88798675 + L1 LINE L1 4477 4935 -1927 1608 167 23 39 chr1 193394989 193395130 -88798534 + AluJb SINE Alu 1 143 -169 2329 101 0 0 chr1 193395130 193395427 -88798237 + AluY SINE Alu 1 297 -14 1608 167 23 39 chr1 193395427 193395591 -88798073 + AluJb SINE Alu 143 301 -11 8884 165 41 102 chr1 193395591 193395888 -88797776 + L1 LINE L1 4935 5249 -1613 825 199 0 8 chr1 193395888 193396019 -88797645 + AluJo SINE Alu 5 134 -178 8884 165 41 102 chr1 193396019 193396663 -88797001 + L1 LINE L1 5249 5779 -1083 1721 162 72 0 chr1 193396669 193396959 -88796705 - AluSx SINE Alu -1 311 1 677 171 68 0 chr1 193396961 193397078 -88796586 - AluJo/FLAM SINE Alu -177 125 1 1703 166 0 11 chr1 193397091 193397368 -88796296 - AluJo SINE Alu -13 299 26 242 132 0 0 chr1 193397368 193397406 -88796258 + L1MA7 LINE L1 5938 5975 -337 2753 123 11 27 chr1 193397406 193397845 -88795819 - MER4E LTR ERV1 0 779 348 748 128 0 0 chr1 193397872 193397974 -88795690 - U6 snRNA snRNA -5 102 1 1317 119 10 10 chr1 193397979 193398180 -88795484 - MER4B LTR ERV1 -404 206 6 1664 141 56 7 chr1 193398202 193398507 -88795157 + L1MA7 LINE L1 5967 6286 -5 1187 174 0 33 chr1 193398514 193398726 -88794938 + AluJo SINE Alu 84 288 -24 4860 77 14 20 chr1 193398930 193399569 -88794095 + PABL_A LTR ERV1 26 660 0 1827 154 23 16 chr1 193399639 193399945 -88793719 - AluSx SINE Alu -4 308 1 258 261 15 15 chr1 193400597 193400662 -88793002 + MIR SINE MIR 72 136 -126 396 174 101 46 chr1 193400689 193400798 -88792866 + MIR SINE MIR 123 237 -25 2284 157 8 25 chr1 193400838 193401240 -88792424 - MER61B LTR ERV1 -29 396 2 881 109 7 36 chr1 193401391 193401528 -88792136 + LTR39 LTR ERV1 3 135 -648 1024 106 0 0 chr1 193401528 193401670 -88791994 + AluSp/q SINE Alu 169 310 -3 2077 119 50 0 chr1 193401670 193401973 -88791691 + LTR39 LTR ERV1 166 483 -300 1702 169 3 56 chr1 193401975 193402171 -88791493 + AluJo SINE Alu 3 177 -135 2154 116 10 0 chr1 193402171 193402474 -88791190 + AluSq SINE Alu 1 306 -7 1702 169 3 56 chr1 193402474 193402597 -88791067 + AluJo SINE Alu 177 305 -7 632 237 56 48 chr1 193402626 193402963 -88790701 - LTR35 LTR ERV1 0 678 350 271 225 79 22 chr1 193403512 193403601 -88790063 + L2 LINE L2 2675 2768 -546 434 262 229 9 chr1 193403990 193404204 -88789460 + MIR SINE MIR 2 262 0 484 100 0 62 chr1 193404386 193404466 -88789198 - MER1B DNA MER1_type 0 339 265 1880 217 99 79 chr1 193404467 193404694 -88788970 + MER50 LTR ERV1 12 233 -501 2191 77 3 51 chr1 193404694 193404838 -88788826 + AluSg SINE Alu 1 124 -186 2841 10 0 0 chr1 193404838 193405143 -88788521 + AluYa5 SINE Alu 1 305 -6 2191 77 3 51 chr1 193405143 193405311 -88788353 + AluSg SINE Alu 124 298 -12 1880 217 99 79 chr1 193405311 193405792 -88787872 + MER50 LTR ERV1 233 734 0 1945 132 0 4 chr1 193405792 193406065 -88787599 - MER1B DNA MER1_type -66 273 2 27 29 0 0 chr1 193406427 193406461 -88787203 + AT_rich Low_complexity Low_complexity 1 34 0 830 191 0 0 chr1 193406651 193406782 -88786882 + FLAM_A SINE Alu 1 131 -2 30 27 0 0 chr1 193406814 193406851 -88786813 + AT_rich Low_complexity Low_complexity 1 37 0 715 197 0 8 chr1 193406862 193406989 -88786675 + MER2 DNA MER2_type 1 126 -219 1315 126 61 14 chr1 193407041 193407255 -88786409 + MER2 DNA MER2_type 122 345 0 234 279 44 29 chr1 193407264 193407332 -88786332 + MER21B LTR ERV1 22 90 -773 316 216 0 0 chr1 193407367 193407418 -88786246 + MER21B LTR ERV1 46 96 -767 354 203 27 0 chr1 193407456 193407530 -88786134 + MER21B LTR ERV1 98 173 -690 2217 182 27 55 chr1 193407542 193407786 -88785878 + MER21B LTR ERV1 330 558 -305 1452 171 7 57 chr1 193407786 193407935 -88785729 - AluJb SINE Alu -28 284 156 180 0 0 0 chr1 193407935 193407955 -88785709 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1452 171 7 57 chr1 193407955 193408104 -88785560 - AluJb SINE Alu -156 156 1 2217 182 27 55 chr1 193408104 193408298 -88785366 + MER21B LTR ERV1 558 756 -107 1223 192 44 17 chr1 193408397 193408684 -88784980 + LTR10B LTR ERV1 309 547 0 235 241 114 25 chr1 193408687 193408766 -88784898 + MER21B LTR ERV1 775 860 -3 690 101 0 10 chr1 193409251 193409350 -88784314 + MER4A LTR ERV1 1 98 -566 1952 105 3 77 chr1 193409350 193409723 -88783941 + MER4A LTR ERV1 261 664 0 1861 199 75 70 chr1 193410191 193410268 -88783396 + LTR48 LTR ERV1 1 76 -568 2751 184 113 72 chr1 193410268 193411061 -88782603 - LTR1B LTR ERV1 0 826 1 1861 199 75 70 chr1 193411061 193411632 -88782032 + LTR48 LTR ERV1 76 609 -35 1209 191 61 8 chr1 193411674 193411936 -88781728 - AluJo SINE Alu -3 309 34 370 120 0 0 chr1 193411941 193411991 -88781673 + MER39B LTR ERV1 604 653 0 2212 99 23 0 chr1 193412401 193412704 -88780960 + AluSx SINE Alu 1 310 -2 1987 161 0 0 chr1 193413527 193413832 -88779832 - AluJb SINE Alu -7 305 1 1895 167 3 0 chr1 193413861 193414155 -88779509 + AluSx SINE Alu 1 295 -17 1424 163 113 0 chr1 193414611 193414897 -88778767 + AluJb SINE Alu 2 316 0 247 357 110 19 chr1 193415411 193415565 -88778099 + L2 LINE L2 343 510 -2804 288 320 101 49 chr1 193415636 193415964 -88777700 + L2 LINE L2 674 1018 -2296 311 190 0 0 chr1 193416378 193416436 -88777228 - MER58B DNA MER1_type -2 339 282 1969 167 62 57 chr1 193416492 193416688 -88776976 - MSTB LTR MaLR -23 403 209 1627 194 16 13 chr1 193416688 193416997 -88776667 - AluJb SINE Alu -2 310 1 1969 167 62 57 chr1 193416997 193417023 -88776641 - MSTB LTR MaLR -217 209 185 2086 89 3 80 chr1 193417023 193417347 -88776317 - AluSx SINE Alu -13 299 1 1969 167 62 57 chr1 193417347 193417524 -88776140 - MSTB LTR MaLR -241 185 1 951 196 143 0 chr1 193417524 193417751 -88775913 - MER58B DNA MER1_type -55 286 27 984 212 34 0 chr1 193417773 193417952 -88775712 + MER5A DNA MER1_type 5 189 0 695 217 0 36 chr1 193419018 193419156 -88774508 - FLAM_A SINE Alu 0 133 1 272 167 0 0 chr1 193419324 193419366 -88774298 + MER2 DNA MER2_type 2 43 -302 1624 109 35 0 chr1 193419414 193419644 -88774020 - THE1A LTR MaLR -1 354 117 1150 127 11 17 chr1 193419656 193419837 -88773827 - THE1C LTR MaLR -195 180 1 1318 208 10 45 chr1 193419838 193419870 -88773794 + MER2 DNA MER2_type 67 99 -246 2071 123 0 3 chr1 193419870 193420179 -88773485 + AluSq SINE Alu 1 308 0 1318 208 10 45 chr1 193420179 193420434 -88773230 + MER2 DNA MER2_type 99 345 0 211 347 61 20 chr1 193420437 193420535 -88773129 + L2 LINE L2 3158 3259 -13 2164 124 0 7 chr1 193420795 193421094 -88772570 + AluSg SINE Alu 1 297 -13 375 210 77 63 chr1 193421199 193421342 -88772322 - L1ME4a LINE L1 -247 5874 5730 1813 113 83 0 chr1 193421389 193421654 -88772010 - AluY SINE Alu -20 291 5 2067 106 26 13 chr1 193421742 193422045 -88771619 + AluSx SINE Alu 1 307 -5 800 126 0 0 chr1 193422107 193422218 -88771446 + FLAM_C SINE Alu 1 111 -32 1872 124 38 24 chr1 193422350 193422640 -88771024 - AluSc SINE Alu -15 294 1 1717 178 3 13 chr1 193422735 193423044 -88770620 + AluJb SINE Alu 5 310 -2 22 70 0 0 chr1 193423225 193423268 -88770396 + AT_rich Low_complexity Low_complexity 1 43 0 1734 173 3 33 chr1 193423558 193423864 -88769800 + AluJo SINE Alu 1 297 -15 299 297 18 18 chr1 193424279 193424444 -88769220 + L1ME3 LINE L1 4629 4793 -1353 363 107 0 22 chr1 193424444 193424679 -88768985 + AluSq SINE Alu 1 302 -1 495 339 73 49 chr1 193424682 193425232 -88768432 + L1ME3 LINE L1 4787 5322 -840 2588 152 51 5 chr1 193425232 193425641 -88768023 + MSTA LTR MaLR 1 428 0 495 339 73 49 chr1 193425641 193426144 -88767520 + L1ME3 LINE L1 5322 5884 -278 1357 235 70 83 chr1 193426325 193426602 -88767062 + L2 LINE L2 2417 2696 -617 180 0 0 0 chr1 193426602 193426622 -88767042 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2168 123 3 0 chr1 193426624 193426926 -88766738 - AluSq SINE Alu -10 303 1 1357 235 70 83 chr1 193426926 193427319 -88766345 + L2 LINE L2 2697 3082 -231 5035 171 32 28 chr1 193427343 193428352 -88765312 + L1MC2 LINE L1 5323 6335 -9 1459 183 138 112 chr1 193428449 193428524 -88765140 - L1MC4 LINE L1 -1 8041 7969 2084 143 0 0 chr1 193428524 193428831 -88764833 - AluJb SINE Alu 0 312 6 1459 183 138 112 chr1 193428831 193429237 -88764427 - L1MC4 LINE L1 -73 7969 7536 1591 155 126 11 chr1 193429237 193429515 -88764149 + AluJb SINE Alu 3 312 0 1459 183 138 112 chr1 193429515 193429684 -88763980 - L1MC4 LINE L1 -506 7536 7373 347 235 129 0 chr1 193429815 193429900 -88763764 + L2 LINE L2 3216 3311 -2 2166 90 10 23 chr1 193430210 193430511 -88763153 - L1PA11 LINE L1 0 6174 5878 37 0 0 0 chr1 193430511 193430548 -88763116 + AT_rich Low_complexity Low_complexity 1 37 0 378 0 0 0 chr1 193430571 193430613 -88763051 + (TA)n Simple_repeat Simple_repeat 2 43 0 4694 106 15 10 chr1 193430614 193431819 -88761845 - L1PA11 LINE L1 -268 5906 4697 4081 159 8 38 chr1 193431810 193432201 -88761463 + L1P LINE L1 2924 3280 -2866 * 2146 112 3 16 chr1 193432201 193432504 -88761160 + AluSx SINE Alu 1 299 -13 4081 159 8 38 chr1 193432504 193432912 -88760752 + L1P LINE L1 3280 3699 -2447 1730 163 7 17 chr1 193432942 193433254 -88760410 - AluJo SINE Alu 0 309 1 2220 125 0 3 chr1 193433458 193433770 -88759894 - AluSx SINE Alu -1 311 1 357 161 0 0 chr1 193433806 193433862 -88759802 - FRAM/FAM SINE Alu -118 57 2 1731 173 29 0 chr1 193433897 193434175 -88759489 - AluJb SINE Alu -26 286 1 1599 195 7 37 chr1 193434185 193434482 -88759182 - AluJb SINE Alu -24 288 1 2388 94 3 0 chr1 193434746 193435053 -88758611 - AluY SINE Alu -3 308 1 2323 78 6 25 chr1 193435677 193435996 -88757668 - AluSq SINE Alu 0 313 1 21 82 0 0 chr1 193436064 193436113 -88757551 + AT_rich Low_complexity Low_complexity 1 49 0 307 248 83 64 chr1 193436211 193436368 -88757296 + L2 LINE L2 3153 3312 -1 2058 135 15 122 chr1 193437241 193437732 -88755932 + L1MB3 LINE L1 5651 6103 -80 820 173 0 1 chr1 193437736 193437986 -88755678 + AluJ SINE Alu 7 289 -23 352 115 0 0 chr1 193437990 193438042 -88755622 + L1MB3 LINE L1 6087 6138 -45 657 200 0 9 chr1 193438043 193438153 -88755511 + FLAM_C SINE Alu 2 110 -33 1718 185 0 0 chr1 193438168 193438454 -88755210 - AluJb SINE Alu -26 286 1 1173 153 0 79 chr1 193438495 193438724 -88754940 + AluJo SINE Alu 1 211 -101 271 106 0 0 chr1 193438774 193438821 -88754843 + L1MB3 LINE L1 6137 6183 0 2305 112 0 3 chr1 193438842 193439155 -88754509 - AluSx SINE Alu 0 312 1 1684 196 0 10 chr1 193439652 193439958 -88753706 + AluJb SINE Alu 1 303 -9 2499 73 0 0 chr1 193440003 193440306 -88753358 + AluY SINE Alu 1 303 -8 2078 130 0 7 chr1 193440353 193440654 -88753010 + AluSx SINE Alu 1 299 -13 1691 144 4 22 chr1 193440731 193441002 -88752662 + AluJb SINE Alu 3 268 -44 200 170 43 0 chr1 193441013 193441060 -88752604 + GA-rich Low_complexity Low_complexity 5 53 0 * 788 116 0 48 chr1 193441053 193441242 -88752422 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2307 115 0 0 chr1 193441274 193441586 -88752078 + AluSx SINE Alu 1 312 0 520 286 107 32 chr1 193441823 193442103 -88751561 + MER102b DNA MER1_type 38 338 -3 2125 146 0 0 chr1 193442186 193442495 -88751169 + AluJb SINE Alu 1 309 -3 225 299 69 23 chr1 193442502 193442589 -88751075 + MIR SINE MIR 118 208 -54 2137 121 0 0 chr1 193442642 193442951 -88750713 + AluSx SINE Alu 1 309 0 203 191 24 0 chr1 193443137 193443179 -88750485 + GA-rich Low_complexity Low_complexity 1 43 0 1840 174 0 6 chr1 193443720 193444031 -88749633 - AluJb SINE Alu -3 309 1 4295 161 31 3 chr1 193444502 193445204 -88748460 - MER50 LTR ERV1 -12 722 1 293 255 106 0 chr1 193445395 193445489 -88748175 - MIR3 SINE MIR -23 185 82 2124 177 13 39 chr1 193445637 193446021 -88747643 + MLT1A2 LTR MaLR 1 374 0 25 0 0 0 chr1 193446275 193446300 -88747364 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chr1 193446325 193446356 -88747308 + AT_rich Low_complexity Low_complexity 1 31 0 1022 150 0 0 chr1 193446402 193446572 -88747092 - AluSg/x SINE Alu 0 304 135 1844 151 0 36 chr1 193446613 193446918 -88746746 - AluSx SINE Alu -18 294 1 1803 171 13 7 chr1 193446919 193447223 -88746441 - AluJb SINE Alu -6 306 1 275 227 45 38 chr1 193447228 193447360 -88746304 - L1MC5 LINE L1 -205 7756 7624 29 47 0 0 chr1 193447626 193447669 -88745995 + AT_rich Low_complexity Low_complexity 1 43 0 2083 109 10 7 chr1 193447860 193448154 -88745510 + AluSq SINE Alu 1 295 -18 2335 86 7 3 chr1 193448310 193448613 -88745051 + AluSx SINE Alu 1 304 -8 207 0 0 0 chr1 193448835 193448858 -88744806 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1003 205 5 20 chr1 193448863 193449041 -88744623 - AluJo SINE Alu 0 312 136 2501 75 0 7 chr1 193449041 193449349 -88744315 - AluY SINE Alu -5 306 1 1003 205 5 20 chr1 193449349 193449400 -88744264 - AluJo SINE Alu -176 136 86 257 301 84 56 chr1 193450128 193450271 -88743393 + MER5A DNA MER1_type 15 161 -28 * 268 273 103 67 chr1 193450143 193450308 -88743356 - MER5A DNA MER1_type -18 171 1 2162 115 0 0 chr1 193450403 193450698 -88742966 + AluSx SINE Alu 3 297 -15 24 32 0 0 chr1 193450698 193450729 -88742935 + AT_rich Low_complexity Low_complexity 1 31 0 2214 96 17 0 chr1 193450921 193451246 -88742418 + AluSp SINE Alu 12 313 0 1731 170 22 67 chr1 193451337 193451474 -88742190 + MER93b LTR ERV1 1 143 -230 1416 181 69 24 chr1 193451474 193451762 -88741902 + AluJb SINE Alu 1 301 -11 1731 170 22 67 chr1 193451762 193451995 -88741669 + MER93b LTR ERV1 143 354 -19 933 192 6 0 chr1 193452000 193452167 -88741497 + FRAM SINE Alu 1 168 -8 2736 105 11 3 chr1 193452250 193452611 -88741053 - THE1B LTR MaLR 0 364 1 241 259 89 131 chr1 193452656 193452892 -88740772 - MIR SINE MIR -31 231 6 1543 213 69 67 chr1 193453091 193453556 -88740108 - MER31B LTR ERV1 0 466 1 205 258 150 8 chr1 193453633 193453753 -88739911 + MIR SINE MIR 121 257 -5 22 35 0 0 chr1 193453772 193453801 -88739863 + AT_rich Low_complexity Low_complexity 1 29 0 719 212 0 36 chr1 193454066 193454203 -88739461 - FLAM_A SINE Alu -1 132 1 1146 315 50 23 chr1 193454527 193454965 -88738699 - LTR16A LTR ERVL 0 450 1 1977 144 20 0 chr1 193455044 193455364 -88738300 + AluSx SINE Alu 6 331 0 854 121 0 8 chr1 193455425 193455667 -88737997 + FLAM_C SINE Alu 19 259 0 812 179 8 0 chr1 193455670 193455804 -88737860 + AluJb SINE Alu 133 267 -45 279 258 0 0 chr1 193456111 193456173 -88737491 + L2 LINE L2 3247 3308 -5 320 331 29 15 chr1 193456449 193456585 -88737079 + L2 LINE L2 2898 3035 -237 211 204 20 0 chr1 193456595 193456644 -88737020 + (CA)n Simple_repeat Simple_repeat 1 50 0 2290 131 84 23 chr1 193456677 193456843 -88736821 + LTR26B LTR ERV1 28 182 -349 2192 132 0 0 chr1 193456843 193457146 -88736518 + AluSq SINE Alu 1 303 -10 2290 131 84 23 chr1 193457146 193457420 -88736244 + LTR26B LTR ERV1 182 531 0 837 219 58 100 chr1 193457515 193457603 -88736061 + MLT2D LTR ERVL 1 91 -323 1947 151 0 0 chr1 193457603 193457916 -88735748 - AluSx SINE Alu 0 313 1 837 219 58 100 chr1 193457916 193458137 -88735527 + MLT2D LTR ERVL 91 298 -116 364 85 0 0 chr1 193458132 193458179 -88735485 + MLT2D LTR ERVL 467 513 -2 * 1066 137 60 0 chr1 193458308 193458476 -88735188 - FRAM SINE Alu -2 174 1 1186 90 0 0 chr1 193458784 193458939 -88734725 + AluY SINE Alu 155 309 -2 2249 102 0 0 chr1 193459804 193460121 -88733543 + AluSq SINE Alu 1 317 0 1740 149 0 30 chr1 193460133 193460451 -88733213 + AluSx SINE Alu 1 309 0 24 77 0 0 chr1 193460461 193460513 -88733151 + AT_rich Low_complexity Low_complexity 1 52 0 2131 89 0 36 chr1 193460550 193460852 -88732812 - AluY SINE Alu -20 291 1 615 168 10 0 chr1 193461130 193461231 -88732433 + U13 snRNA snRNA 1 102 -2 1879 141 38 0 chr1 193462175 193462465 -88731199 + AluSx SINE Alu 1 301 -11 460 158 21 0 chr1 193462498 193462593 -88731071 + GA-rich Low_complexity Low_complexity 4 100 0 2518 35 0 38 chr1 193462771 193463087 -88730577 - AluY SINE Alu -7 304 1 1685 170 0 42 chr1 193463170 193463481 -88730183 + AluJo SINE Alu 1 298 -14 1197 188 0 44 chr1 193463654 193463883 -88729781 - AluJo SINE Alu -83 229 11 260 273 192 55 chr1 193464146 193464417 -88729247 + L2 LINE L2 1036 1343 -1971 198 0 0 0 chr1 193465331 193465353 -88728311 + (T)n Simple_repeat Simple_repeat 1 22 0 648 292 35 26 chr1 193466349 193466575 -88727089 - MIR SINE MIR -19 243 16 440 219 15 58 chr1 193466860 193466997 -88726667 + MIR SINE MIR 124 254 -8 643 222 8 0 chr1 193467724 193467850 -88725814 - FLAM_A SINE Alu -6 127 1 192 313 60 0 chr1 193468288 193468355 -88725309 + L2 LINE L2 3200 3270 -2 284 281 90 11 chr1 193468911 193469000 -88724664 - MIR SINE MIR -150 112 17 358 172 145 69 chr1 193469025 193469144 -88724520 + MER113 DNA MER1_type? 1 134 -387 2297 95 3 0 chr1 193469144 193469440 -88724224 - AluSg SINE Alu -13 297 1 358 172 145 69 chr1 193469440 193469465 -88724199 + MER113 DNA MER1_type? 134 156 -365 236 283 17 0 chr1 193469521 193469581 -88724083 + MER113 DNA MER1_type? 454 514 -7 224 257 90 97 chr1 193470089 193470233 -88723431 + MIR SINE MIR 47 189 -73 377 358 119 0 chr1 193470516 193470650 -88723014 + MER91A DNA MER1_type 1 150 -46 21 0 0 0 chr1 193470943 193470964 -88722700 + AT_rich Low_complexity Low_complexity 1 21 0 1492 171 55 34 chr1 193471637 193471929 -88721735 + 7SLRNA srpRNA srpRNA 4 301 -19 2061 100 14 17 chr1 193471952 193472273 -88721391 - AluSx SINE Alu 0 312 1 189 0 0 0 chr1 193472282 193472303 -88721361 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 23 0 0 0 chr1 193472411 193472434 -88721230 + AT_rich Low_complexity Low_complexity 1 23 0 748 209 68 23 chr1 193472557 193472734 -88720930 + AluJo SINE Alu 119 303 -9 1946 124 60 0 chr1 193472762 193473045 -88720619 + AluSx SINE Alu 1 300 -12 408 343 81 24 chr1 193473088 193473298 -88720366 - MIR SINE MIR 0 262 41 374 375 23 0 chr1 193473735 193473863 -88719801 - L3 LINE CR1 -19 1558 1428 455 314 243 17 chr1 193474282 193474702 -88718962 - L3 LINE CR1 -438 1139 625 1639 175 70 12 chr1 193475037 193475380 -88718284 - MLT1A2 LTR MaLR -11 363 1 2114 129 10 0 chr1 193475423 193475726 -88717938 - AluSx SINE Alu -6 306 1 540 187 9 9 chr1 193475743 193475850 -88717814 - L1MC4 LINE L1 -33 8009 7903 342 0 0 0 chr1 193475998 193476036 -88717628 + (TG)n Simple_repeat Simple_repeat 2 39 0 1607 161 47 4 chr1 193476036 193476310 -88717354 - AluJb SINE Alu -22 290 5 402 270 63 9 chr1 193476524 193476635 -88717029 + MIR SINE MIR 22 138 -124 1868 163 10 13 chr1 193476679 193476992 -88716672 - AluJb SINE Alu 0 312 1 1600 177 0 41 chr1 193477056 193477350 -88716314 - AluJo SINE Alu -30 282 1 1281 238 74 6 chr1 193477444 193477780 -88715884 - MLT1A1 LTR MaLR -2 363 5 1341 185 40 50 chr1 193478030 193478333 -88715331 - AluJo SINE Alu -12 300 1 269 204 301 19 chr1 193478431 193478534 -88715130 + L2 LINE L2 3137 3268 -4 2167 90 19 42 chr1 193478732 193479042 -88714622 + AluSx SINE Alu 1 303 -9 1038 180 33 5 chr1 193479627 193479838 -88713826 - AluJo SINE Alu -15 297 81 1643 158 14 14 chr1 193480123 193480414 -88713250 - AluJb SINE Alu -14 298 8 1506 157 0 8 chr1 193480418 193480654 -88713010 - AluJb SINE Alu -78 234 1 548 201 60 67 chr1 193481176 193481310 -88712354 - FLAM_A SINE Alu 0 133 1 184 241 69 17 chr1 193481356 193481414 -88712250 + L2 LINE L2 2798 2858 -456 644 221 70 35 chr1 193481467 193481639 -88712025 - MER5B DNA MER1_type 0 178 1 277 272 251 31 chr1 193481658 193481853 -88711811 + L2 LINE L2 3026 3263 -50 1918 139 11 0 chr1 193481964 193482245 -88711419 - AluSx SINE Alu -28 284 1 2328 110 0 0 chr1 193482465 193482764 -88710900 + AluSx SINE Alu 1 299 -13 3579 212 117 57 chr1 193482764 193482931 -88710733 - L1ME LINE L1 -583 5652 5497 2727 104 11 14 chr1 193482931 193483296 -88710368 - THE1B LTR MaLR 0 364 1 3579 212 117 57 chr1 193483296 193484250 -88709414 - L1ME LINE L1 -738 5497 4407 2480 83 0 0 chr1 193484250 193484551 -88709113 - AluSp SINE Alu -12 301 1 3579 212 117 57 chr1 193484551 193485014 -88708650 - L1ME LINE L1 -1828 4407 3974 1794 141 25 7 chr1 193485016 193485300 -88708364 + MER7A DNA MER2_type 4 290 -56 866 142 0 0 chr1 193485300 193485420 -88708244 - AluSq/x SINE Alu -193 120 1 959 233 187 124 chr1 193485421 193485911 -88707753 - L1ME LINE L1 -4753 1643 1185 279 0 0 0 chr1 193485911 193485942 -88707722 + (TG)n Simple_repeat Simple_repeat 2 32 0 338 89 0 0 chr1 193485947 193485992 -88707672 - MER72 LTR ERV1 -31 691 647 959 233 187 124 chr1 193485992 193486336 -88707328 - L1ME LINE L1 -5214 1182 861 559 189 110 63 chr1 193486336 193486463 -88707201 + FLAM_A SINE Alu 1 133 0 468 171 120 68 chr1 193486347 193486464 -88707200 + FLAM_A SINE Alu 12 134 -8 * 959 233 187 124 chr1 193486463 193486552 -88707112 - L1ME LINE L1 -5535 861 779 2019 146 0 10 chr1 193486552 193486847 -88706817 + AluSx SINE Alu 1 292 -20 959 233 187 124 chr1 193486847 193486974 -88706690 - L1ME LINE L1 -5617 779 472 3288 183 32 5 chr1 193486983 193487721 -88705943 - L1 LINE L1 -1596 4550 3793 2391 90 3 0 chr1 193488098 193488408 -88705256 - AluY SINE Alu 0 311 1 230 206 47 131 chr1 193488738 193488845 -88704819 - MER5B DNA MER1_type 0 178 92 483 252 67 15 chr1 193488887 193489022 -88704642 - MER5A DNA MER1_type 0 189 48 2529 74 3 0 chr1 193489064 193489374 -88704290 - AluSx SINE Alu -1 311 1 238 250 62 62 chr1 193489393 193489537 -88704127 - L2 LINE L2 -1802 1512 1369 235 281 123 18 chr1 193489663 193489777 -88703887 - L3 LINE CR1 -821 756 631 189 0 0 0 chr1 193490417 193490438 -88703226 + (CAAAAA)n Simple_repeat Simple_repeat 1 21 0 186 71 0 0 chr1 193491784 193491812 -88701852 + (TG)n Simple_repeat Simple_repeat 2 29 0 24 0 0 0 chr1 193492077 193492101 -88701563 + AT_rich Low_complexity Low_complexity 1 24 0 255 273 71 40 chr1 193492716 193492815 -88700849 + L2 LINE L2 3199 3300 -13 339 25 0 0 chr1 193493475 193493515 -88700149 + (TG)n Simple_repeat Simple_repeat 2 41 0 201 133 0 44 chr1 193494504 193494549 -88699115 + (TTAAA)n Simple_repeat Simple_repeat 2 44 0 426 333 163 0 chr1 193495217 193495364 -88698300 + MER5A DNA MER1_type 9 179 -10 514 263 60 32 chr1 193495553 193495804 -88697860 - Charlie7 DNA MER1_type -1889 723 466 902 233 197 53 chr1 193495820 193496287 -88697377 - MLT1F LTR MaLR -6 536 3 617 252 181 43 chr1 193496304 193496653 -88697011 - Charlie7 DNA MER1_type -2214 398 2 272 218 11 58 chr1 193497086 193497173 -88696491 + Charlie4a DNA MER1_type 39 121 -387 297 230 54 0 chr1 193497184 193497258 -88696406 - MLT1F LTR MaLR -463 79 2 670 186 99 87 chr1 193497326 193497649 -88696015 + Charlie4a DNA MER1_type 182 508 0 1881 163 0 25 chr1 193497707 193498026 -88695638 - AluSx SINE Alu -1 311 1 2125 136 0 3 chr1 193498109 193498404 -88695260 - AluSx SINE Alu -15 297 4 277 272 99 6 chr1 193498409 193498571 -88695093 - L1MC5 LINE L1 -168 7793 7617 321 242 75 88 chr1 193498586 193498826 -88694838 - L1MC5 LINE L1 -393 7568 7332 583 155 93 0 chr1 193499039 193499136 -88694528 - U6 snRNA snRNA 0 107 2 2024 114 0 0 chr1 193499213 193499486 -88694178 - AluSx SINE Alu -39 273 1 2154 111 3 20 chr1 193500021 193500327 -88693337 - AluSc SINE Alu -8 301 1 31 0 0 0 chr1 193501325 193501356 -88692308 + AT_rich Low_complexity Low_complexity 1 31 0 2245 100 0 13 chr1 193501711 193502012 -88691652 + AluSx SINE Alu 1 297 -15 2415 92 0 0 chr1 193502977 193503271 -88690393 + AluSx SINE Alu 1 294 -18 1993 147 0 0 chr1 193505562 193505861 -88687803 - AluSx SINE Alu -13 299 1 2163 110 3 0 chr1 193506029 193506329 -88687335 - AluSg SINE Alu -9 301 1 2383 99 0 0 chr1 193506352 193506655 -88687009 - AluSx SINE Alu -8 304 2 1831 163 10 0 chr1 193506703 193506991 -88686673 + AluSx SINE Alu 6 296 -16 312 293 0 30 chr1 193507191 193507290 -88686374 + L2 LINE L2 1338 1433 -1881 1343 265 128 88 chr1 193507388 193507510 -88686154 + L2 LINE L2 1675 1791 -1523 2380 69 0 10 chr1 193507510 193507814 -88685850 - AluY SINE Alu -10 301 1 1343 265 128 88 chr1 193507814 193508047 -88685617 + L2 LINE L2 1791 2013 -1301 1441 154 83 0 chr1 193508047 193508313 -88685351 - AluJo SINE Alu -24 288 1 1343 265 128 88 chr1 193508313 193509001 -88684663 + L2 LINE L2 2013 2761 -553 2334 213 164 31 chr1 193509249 193509467 -88684197 + L1ME2 LINE L1 5018 5206 -958 1951 139 26 13 chr1 193509467 193509769 -88683895 - AluJb SINE Alu -6 306 1 2334 213 164 31 chr1 193509769 193510560 -88683104 + L1ME2 LINE L1 5206 6151 -13 267 301 12 12 chr1 193510610 193510693 -88682971 - MIR SINE MIR -113 149 67 231 225 0 0 chr1 193511899 193511970 -88681694 + GA-rich Low_complexity Low_complexity 2 72 0 218 177 0 32 chr1 193511984 193512046 -88681618 + GA-rich Low_complexity Low_complexity 4 63 0 2186 106 0 0 chr1 193512861 193513145 -88680519 - AluSc SINE Alu -25 284 1 21 36 0 0 chr1 193513296 193513324 -88680340 + AT_rich Low_complexity Low_complexity 1 28 0 557 216 0 0 chr1 193513846 193513948 -88679716 - FLAM_A SINE Alu -40 102 1 198 103 0 0 chr1 193515264 193515293 -88678371 + (CAG)n Simple_repeat Simple_repeat 1 29 0 1509 190 3 68 chr1 193516938 193517114 -88676550 - AluJb SINE Alu -21 291 142 2061 64 0 0 chr1 193517114 193517364 -88676300 - AluY SINE Alu -2 309 60 1509 190 3 68 chr1 193517364 193517498 -88676166 - AluJb SINE Alu -170 142 1 1917 141 26 3 chr1 193517925 193518229 -88675435 - AluJb SINE Alu -1 311 1 2364 54 10 14 chr1 193518231 193518528 -88675136 - AluSp SINE Alu -17 296 1 591 189 13 33 chr1 193518536 193518689 -88674975 - L1MB1 LINE L1 0 6168 6019 1407 172 70 4 chr1 193518710 193519057 -88674607 - L1MB1 LINE L1 -158 6010 5697 23 0 0 0 chr1 193521937 193521960 -88671704 + AT_rich Low_complexity Low_complexity 1 23 0 2364 88 0 0 chr1 193521984 193522280 -88671384 - AluY SINE Alu -12 299 4 715 77 20 6 chr1 193522315 193522564 -88671100 + AluY SINE Alu 1 299 -12 441 242 317 0 chr1 193522608 193522794 -88670870 + MIR SINE MIR 2 246 -16 1381 186 54 62 chr1 193522944 193523335 -88670329 - MSTC LTR MaLR -7 421 40 2131 96 0 48 chr1 193523335 193523647 -88670017 - AluSx SINE Alu -15 297 1 1381 186 54 62 chr1 193523647 193523687 -88669977 - MSTC LTR MaLR -388 40 1 351 0 0 0 chr1 193524933 193524972 -88668692 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 441 116 87 0 chr1 193525745 193525814 -88667850 + MER5A DNA MER1_type 1 75 -114 1619 176 18 4 chr1 193525817 193525992 -88667672 - AluSx SINE Alu 0 306 124 207 0 0 0 chr1 193525992 193526015 -88667649 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1619 176 18 4 chr1 193526015 193526141 -88667523 - AluSx SINE Alu -182 124 1 1119 113 25 0 chr1 193526168 193526327 -88667337 + AluSp SINE Alu 1 163 -150 2110 128 0 28 chr1 193526857 193527176 -88666488 - AluSx SINE Alu -2 310 1 1923 130 0 11 chr1 193527215 193527492 -88666172 - AluSx SINE Alu -38 274 1 1223 140 67 0 chr1 193528083 193528276 -88665388 - AluJb SINE Alu -16 296 91 23 54 0 0 chr1 193528389 193528426 -88665238 + AT_rich Low_complexity Low_complexity 1 37 0 548 230 0 0 chr1 193528441 193528554 -88665110 - AluJb SINE Alu -193 119 7 1887 174 3 0 chr1 193528798 193529085 -88664579 - AluSx SINE Alu -24 288 1 36469 77 17 7 chr1 193529692 193535779 -88657885 - L1PA6 LINE L1 0 6154 11 233 135 162 40 chr1 193536023 193536097 -88657567 - MER46C DNA MER2_type -23 315 233 441 323 21 0 chr1 193536569 193537003 -88656661 + (CCCCAG)n Simple_repeat Simple_repeat 1 443 0 363 133 0 80 chr1 193537020 193537133 -88656531 + (CCCCAG)n Simple_repeat Simple_repeat 2 105 0 10484 137 137 20 chr1 193537626 193538734 -88654930 + Tigger1 DNA MER2_type 26 1003 -1415 2365 97 10 0 chr1 193538734 193539044 -88654620 - AluSq SINE Alu 0 313 1 10484 137 137 20 chr1 193539044 193540077 -88653587 + Tigger1 DNA MER2_type 1003 2418 0 1277 192 46 80 chr1 193540384 193540686 -88652978 + AluJb SINE Alu 1 292 -20 578 224 60 8 chr1 193540696 193540830 -88652834 - MER5A DNA MER1_type -18 171 31 2555 266 167 20 chr1 193541082 193542387 -88651277 - L2 LINE L2 0 3313 1815 1607 171 30 12 chr1 193542400 193542733 -88650931 + MER2 DNA MER2_type 7 345 0 187 158 0 53 chr1 193542753 193542791 -88650873 - L2 LINE L2 -1539 1775 1740 193 265 44 55 chr1 193542853 193542966 -88650698 - MER5A DNA MER1_type -44 134 27 1597 116 194 10 chr1 193543784 193544078 -88649586 - MER7A DNA MER2_type 0 346 1 202 353 110 22 chr1 193544319 193544455 -88649209 + L2 LINE L2 2797 2944 -370 2159 110 3 0 chr1 193544677 193544969 -88648695 - AluSg SINE Alu -17 293 1 1866 149 35 0 chr1 193547128 193547417 -88646247 + AluSx SINE Alu 1 299 -13 192 338 38 12 chr1 193548216 193548296 -88645368 - MIR3 SINE MIR -45 163 82 24 67 0 0 chr1 193548794 193548839 -88644825 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr1 193549067 193549097 -88644567 + AT_rich Low_complexity Low_complexity 1 30 0 483 285 146 13 chr1 193550111 193550269 -88643395 + MER5A DNA MER1_type 11 189 0 22 0 0 0 chr1 193551362 193551384 -88642280 + AT_rich Low_complexity Low_complexity 1 22 0 772 156 8 23 chr1 193551384 193551512 -88642152 - FLAM_C SINE Alu -7 126 1 678 225 70 11 chr1 193552208 193552395 -88641269 + MER6B DNA MER2_type 1 198 -12 2388 69 10 10 chr1 193552894 193553200 -88640464 - AluSg SINE Alu -4 306 1 296 201 89 11 chr1 193553366 193553545 -88640119 + Charlie5 DNA MER1_type 2371 2563 -49 415 159 0 0 chr1 193554455 193554518 -88639146 - AluJ/FLAM SINE Alu -249 63 1 1313 182 17 9 chr1 193555917 193556148 -88637516 - AluJo SINE Alu -15 297 65 1951 130 3 59 chr1 193556995 193557319 -88636345 - AluJb SINE Alu -6 306 1 340 316 122 10 chr1 193557319 193557494 -88636170 + L1ME LINE L1 5547 5748 -373 1491 174 93 4 chr1 193557494 193557753 -88635911 + AluJo SINE Alu 1 282 -30 340 316 122 10 chr1 193557753 193557773 -88635891 + L1ME LINE L1 5748 5764 -357 1992 122 33 13 chr1 193557809 193558112 -88635552 + AluSx SINE Alu 1 309 -3 317 333 107 12 chr1 193558235 193558403 -88635261 - L1ME LINE L1 -483 5638 5455 278 299 116 27 chr1 193559717 193559864 -88633800 - MIR SINE MIR 0 262 103 432 292 65 11 chr1 193560497 193560682 -88632982 + MER117 DNA MER1_type 1 195 -2 5191 137 109 35 chr1 193561665 193562201 -88631463 - Tigger3b DNA MER2_type -1816 1212 717 1640 169 37 3 chr1 193562201 193562496 -88631168 - AluJo SINE Alu -7 305 1 5191 137 109 35 chr1 193562496 193563088 -88630576 - Tigger3b DNA MER2_type -2311 717 1 1655 159 4 19 chr1 193564029 193564300 -88629364 - AluJb SINE Alu -45 267 1 1694 126 56 53 chr1 193565029 193565287 -88628377 - MER46B DNA MER2_type -2497 234 98 2256 97 17 3 chr1 193565287 193565467 -88628197 - AluSq SINE Alu -9 304 117 186 71 0 0 chr1 193565467 193565495 -88628169 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2256 97 17 3 chr1 193565495 193565612 -88628052 - AluSq SINE Alu -196 117 3 1694 126 56 53 chr1 193565612 193565711 -88627953 - MER46B DNA MER2_type -2633 98 1 2158 91 0 25 chr1 193565767 193566109 -88627555 - AluSc SINE Alu 0 335 1 1274 151 107 0 chr1 193567192 193567397 -88626267 - AluJo SINE Alu -9 303 77 22 80 0 0 chr1 193567829 193567879 -88625785 + AT_rich Low_complexity Low_complexity 1 50 0 198 0 0 0 chr1 193568531 193568553 -88625111 + (T)n Simple_repeat Simple_repeat 1 22 0 243 125 0 0 chr1 193569010 193569050 -88624614 + (T)n Simple_repeat Simple_repeat 1 40 0 192 77 0 0 chr1 193569197 193569223 -88624441 + (T)n Simple_repeat Simple_repeat 1 26 0 288 53 0 0 chr1 193572471 193572509 -88621155 + (TA)n Simple_repeat Simple_repeat 1 38 0 1031 98 0 0 chr1 193572813 193572946 -88620718 + AluSq/x SINE Alu 1 133 -179 2163 109 7 16 chr1 193572961 193573265 -88620399 + AluSq SINE Alu 1 301 -12 1506 98 0 0 chr1 193573420 193573614 -88620050 + AluSx SINE Alu 1 194 -118 886 109 0 0 chr1 193573989 193574108 -88619556 - AluJb SINE Alu -193 119 1 23 0 0 0 chr1 193576206 193576229 -88617435 + AT_rich Low_complexity Low_complexity 1 23 0 379 282 181 13 chr1 193576521 193576670 -88616994 - MIR SINE MIR -88 174 1 12821 130 58 22 chr1 193576695 193578094 -88615570 + Tigger1 DNA MER2_type 1 1348 -1070 2121 112 0 20 chr1 193578094 193578389 -88615275 + AluSg SINE Alu 1 289 -21 12821 130 58 22 chr1 193578389 193579105 -88614559 + Tigger1 DNA MER2_type 1348 2210 -208 2411 77 0 0 chr1 193579105 193579403 -88614261 + AluSp SINE Alu 1 298 -15 12821 130 58 22 chr1 193579403 193579619 -88614045 + Tigger1 DNA MER2_type 2210 2417 -1 3840 52 25 2 chr1 193579668 193580147 -88613517 + LTR2B LTR ERV1 1 490 0 6014 89 7 30 chr1 193580147 193581070 -88612594 + Harlequin LTR ERV1 1 901 -5995 * 6360 58 29 14 chr1 193581055 193582043 -88611621 + Harlequin LTR ERV1 1572 2574 -4322 * 22454 116 17 7 chr1 193582042 193584597 -88609067 + Harlequin LTR ERV1 3352 5950 -946 198 0 0 0 chr1 193584597 193584619 -88609045 + (CA)n Simple_repeat Simple_repeat 1 22 0 22454 116 17 7 chr1 193584619 193585575 -88608089 + Harlequin LTR ERV1 5950 6896 0 3558 72 36 2 chr1 193585575 193586049 -88607615 + LTR2B LTR ERV1 1 490 0 2100 114 0 7 chr1 193586049 193586339 -88607325 + AluSg SINE Alu 15 302 -8 216 303 124 0 chr1 193586347 193586436 -88607228 + MIR SINE MIR 97 196 -66 2088 123 34 31 chr1 193587056 193587413 -88606251 - THE1B LTR MaLR -6 358 1 643 253 76 69 chr1 193587441 193587632 -88606032 - LTR16A LTR ERVL -40 410 222 2449 70 0 13 chr1 193587632 193587944 -88605720 - AluY SINE Alu -3 308 1 643 253 76 69 chr1 193587944 193588159 -88605505 - LTR16A LTR ERVL -228 222 1 250 143 0 0 chr1 193588300 193588349 -88605315 - MERVL LTR ERVL -202 5283 5235 451 335 60 18 chr1 193588519 193588800 -88604864 - MERVL LTR ERVL -686 5078 4786 368 139 29 0 chr1 193588813 193588892 -88604772 - MLT1F LTR MaLR -2 565 480 834 131 0 8 chr1 193588892 193589024 -88604640 - AluJb SINE Alu -183 129 1 * 1256 273 91 39 chr1 193589024 193589485 -88604179 - MLT1F LTR MaLR -57 485 1 451 350 12 29 chr1 193589491 193589620 -88604044 - MERVL LTR ERVL -836 4649 4524 1909 178 87 6 chr1 193589620 193589986 -88603678 - MSTD LTR MaLR 0 396 1 451 350 12 29 chr1 193589986 193590102 -88603562 - MERVL LTR ERVL -961 4524 4408 927 330 66 17 chr1 193590165 193590634 -88603030 - MERVL LTR ERVL -1821 3943 3452 1117 246 36 41 chr1 193590740 193591122 -88602542 - MERVL LTR ERVL -1905 3091 2844 1573 304 75 55 chr1 193591126 193591286 -88602378 - MERVL LTR ERVL -2498 2498 2343 1982 104 0 24 chr1 193591286 193591602 -88602062 - AluSx SINE Alu 0 309 1 1573 304 75 55 chr1 193591602 193591769 -88601895 - MERVL LTR ERVL -2653 2343 2181 2086 95 0 14 chr1 193591769 193592083 -88601581 + AluSq SINE Alu 3 312 0 1573 304 75 55 chr1 193592083 193592483 -88601181 - MERVL LTR ERVL -2815 2181 1753 923 315 66 10 chr1 193592524 193592770 -88600894 - MERVL LTR ERVL -4250 746 515 1761 138 46 11 chr1 193592770 193593053 -88600611 - AluJo SINE Alu -14 298 6 923 315 66 10 chr1 193593053 193593414 -88600250 - MERVL LTR ERVL -4481 515 78 1420 251 19 36 chr1 193593504 193593918 -88599746 - LTR16A LTR ERVL -18 432 26 223 318 48 0 chr1 193593931 193593994 -88599670 - L2 LINE L2 -27 3286 3221 5033 233 126 48 chr1 193594014 193594655 -88599009 - L2 LINE L2 -243 3070 2480 4099 28 38 0 chr1 193594655 193595127 -88598537 + LTR2B LTR ERV1 1 490 0 5033 233 126 48 chr1 193595127 193595159 -88598505 - L2 LINE L2 -833 2480 2452 2018 117 3 0 chr1 193595159 193595480 -88598184 + AluSq SINE Alu 1 322 0 2087 131 0 3 chr1 193595481 193595794 -88597870 + AluSx SINE Alu 1 312 0 5033 233 126 48 chr1 193595794 193595988 -88597676 - L2 LINE L2 -861 2452 2275 2648 133 188 25 chr1 193595988 193596516 -88597148 + LTR18B LTR ERVL 1 614 0 5033 233 126 48 chr1 193596516 193597507 -88596157 - L2 LINE L2 -1038 2275 1059 2074 109 0 0 chr1 193597783 193598097 -88595567 - AluSx SINE Alu 0 316 3 1747 153 61 0 chr1 193598790 193599084 -88594580 + AluSx SINE Alu 1 312 0 1072 92 122 6 chr1 193599164 193599289 -88594375 + MLT2A1 LTR ERVL 262 412 -32 271 78 39 0 chr1 193599289 193599340 -88594324 + (TA)n Simple_repeat Simple_repeat 2 54 0 1072 92 122 6 chr1 193599340 193599378 -88594286 + MLT2A1 LTR ERVL 412 444 0 4456 126 55 35 chr1 193599415 193599984 -88593680 + MER4E LTR ERV1 1 590 -189 2413 62 7 0 chr1 193599984 193600291 -88593373 - AluSc SINE Alu 0 309 1 4456 126 55 35 chr1 193600291 193600485 -88593179 + MER4E LTR ERV1 590 779 0 2495 50 0 0 chr1 193600598 193600898 -88592766 - AluY SINE Alu -11 300 1 734 111 0 0 chr1 193600962 193601061 -88592603 + FRAM SINE Alu 50 148 -28 22 35 0 0 chr1 193601073 193601102 -88592562 + AT_rich Low_complexity Low_complexity 1 29 0 444 246 61 0 chr1 193601142 193601256 -88592408 - MIR SINE MIR -75 187 67 412 322 125 7 chr1 193602006 193602158 -88591506 + MIR SINE MIR 23 192 -70 1334 158 123 11 chr1 193602170 193602430 -88591234 + AluSc SINE Alu 1 289 -20 284 269 32 11 chr1 193602718 193602811 -88590853 + MIR SINE MIR 80 174 -88 1780 137 0 42 chr1 193603492 193603659 -88590005 - AluJb SINE Alu -18 294 121 234 0 0 0 chr1 193603659 193603685 -88589979 + (TTA)n Simple_repeat Simple_repeat 3 28 0 1801 74 46 49 chr1 193603686 193603970 -88589694 - AluY SINE Alu -28 283 1 1780 137 0 42 chr1 193603970 193604107 -88589557 - AluJb SINE Alu -190 122 1 412 313 60 20 chr1 193604109 193604310 -88589354 + Charlie7 DNA MER1_type 479 687 -1925 1955 158 3 0 chr1 193605294 193605605 -88588059 - AluJo SINE Alu 0 312 1 226 215 97 43 chr1 193606652 193606745 -88586919 + LTR48B LTR ERV1 451 548 -96 847 242 37 0 chr1 193606952 193607142 -88586522 - MER3 DNA MER1_type 0 209 13 2092 126 3 0 chr1 193607144 193607446 -88586218 + AluSx SINE Alu 1 303 -9 604 218 85 96 chr1 193607598 193607745 -88585919 - L2 LINE L2 -1 3312 3168 1612 179 6 16 chr1 193607745 193608057 -88585607 + AluJb SINE Alu 3 311 -1 604 218 85 96 chr1 193608057 193608180 -88585484 - L2 LINE L2 -145 3168 3045 2198 138 11 17 chr1 193608180 193608536 -88585128 - THE1A LTR MaLR 0 355 2 2632 84 6 3 chr1 193608537 193608883 -88584781 - THE1A-int LTR MaLR 0 1580 1234 2805 251 82 41 chr1 193608885 193609500 -88584164 - L2 LINE L2 -265 3048 2460 1326 192 59 14 chr1 193609500 193609786 -88583878 + AluJo SINE Alu 3 301 -11 2805 251 82 41 chr1 193609786 193610069 -88583595 - L2 LINE L2 -853 2460 2098 2061 113 0 0 chr1 193610069 193610353 -88583311 + AluSq SINE Alu 21 304 -9 2805 251 82 41 chr1 193610353 193610459 -88583205 - L2 LINE L2 -1215 2098 1998 1796 137 98 49 chr1 193610731 193610793 -88582871 + MLT1B LTR MaLR 1 59 -331 2004 131 3 10 chr1 193610793 193611098 -88582566 - AluSx SINE Alu -9 303 1 1796 137 98 49 chr1 193611098 193611361 -88582303 + MLT1B LTR MaLR 59 342 -48 682 121 0 10 chr1 193611361 193611460 -88582204 + MER4A LTR ERV1 1 98 -566 2011 125 183 12 chr1 193611460 193611805 -88581859 + MER4A LTR ERV1 261 664 0 241 196 20 0 chr1 193611805 193611856 -88581808 + MLT1B LTR MaLR 339 390 0 2101 116 0 3 chr1 193611953 193612255 -88581409 + AluSx SINE Alu 1 301 -11 1238 109 0 0 chr1 193612487 193612662 -88581002 + AluSg/x SINE Alu 131 305 -7 2036 107 10 3 chr1 193612913 193613202 -88580462 + AluSg SINE Alu 1 291 -19 774 154 16 0 chr1 193613543 193613666 -88579998 + AluJb SINE Alu 1 125 -187 516 197 68 0 chr1 193613798 193613915 -88579749 + L1MB3 LINE L1 6052 6176 -7 2408 78 0 0 chr1 193614017 193614325 -88579339 + AluY SINE Alu 1 308 -3 234 0 0 0 chr1 193614503 193614529 -88579135 + (CA)n Simple_repeat Simple_repeat 2 27 0 791 280 20 10 chr1 193616012 193616245 -88577419 + MIR SINE MIR 10 241 -21 989 165 0 0 chr1 193616602 193616760 -88576904 - AluJb SINE Alu -24 288 131 2288 91 0 0 chr1 193616840 193617136 -88576528 - AluSx SINE Alu -16 296 1 2002 121 0 7 chr1 193618035 193618324 -88575340 + AluSq SINE Alu 1 287 -26 357 219 62 67 chr1 193618354 193618532 -88575132 + L1MC5 LINE L1 7749 7925 -36 1061 141 0 34 chr1 193618714 193618891 -88574773 + FRAM SINE Alu 1 163 -13 1923 145 26 0 chr1 193618893 193619197 -88574467 + AluSx SINE Alu 1 312 0 808 120 24 8 chr1 193619202 193619327 -88574337 + FLAM_C SINE Alu 12 138 -5 1697 151 7 4 chr1 193619675 193619954 -88573710 + AluJb SINE Alu 1 280 -32 2803 152 42 20 chr1 193620002 193620079 -88573585 - MER74A LTR ERVL -5 553 479 2059 157 51 0 chr1 193620079 193620454 -88573210 + L1MC1 LINE L1 5939 6332 -1 2803 152 42 20 chr1 193620454 193620917 -88572747 - MER74A LTR ERVL -79 479 1 1934 139 3 7 chr1 193621554 193621864 -88571800 + AluJo SINE Alu 1 309 -3 197 288 34 0 chr1 193622023 193622082 -88571582 - L2 LINE L2 -26 3246 3186 2205 106 7 0 chr1 193622915 193623217 -88570447 + AluSg SINE Alu 2 305 -5 21 0 0 0 chr1 193623500 193623521 -88570143 + AT_rich Low_complexity Low_complexity 1 21 0 723 233 121 5 chr1 193623974 193624180 -88569484 - MIR SINE MIR -8 254 25 408 265 139 30 chr1 193624215 193624381 -88569283 + LTR41 LTR ERVL 1 184 -589 308 242 6 0 chr1 193624794 193624874 -88568790 + LTR41 LTR ERVL 696 794 -1 401 265 10 0 chr1 193625413 193625511 -88568153 + MIR SINE MIR 38 136 -72 2351 88 0 0 chr1 193625713 193626018 -88567646 - AluSg SINE Alu -5 305 1 2292 97 3 0 chr1 193626467 193626776 -88566888 + AluSg SINE Alu 1 310 0 2141 91 3 33 chr1 193627121 193627428 -88566236 + AluSx SINE Alu 1 298 -14 521 314 5 5 chr1 193627553 193627744 -88565920 + LTR16C LTR ERVL 277 467 -24 302 248 99 25 chr1 193627801 193627922 -88565742 + L1MCa LINE L1 1911 2040 -4386 2050 118 3 0 chr1 193627922 193628210 -88565454 - AluSx SINE Alu -23 289 1 215 170 21 0 chr1 193628243 193628290 -88565374 + (TA)n Simple_repeat Simple_repeat 1 48 0 2116 105 3 0 chr1 193628750 193629036 -88564628 + AluSq SINE Alu 14 300 -13 477 252 22 15 chr1 193629064 193629199 -88564465 + MIR3 SINE MIR 58 193 -15 215 79 26 0 chr1 193629421 193629459 -88564205 + (CA)n Simple_repeat Simple_repeat 2 40 0 320 289 190 8 chr1 193629560 193629681 -88563983 + MIR3 SINE MIR 52 194 -14 282 321 71 0 chr1 193629707 193629819 -88563845 - MIR SINE MIR -57 205 86 1130 251 67 65 chr1 193629924 193630461 -88563203 - L1MC4 LINE L1 -17 8025 7488 282 56 0 0 chr1 193632148 193632184 -88561480 + (CA)n Simple_repeat Simple_repeat 2 37 0 332 200 107 0 chr1 193632241 193632316 -88561348 - L2 LINE L2 -1 3271 3189 1485 181 146 17 chr1 193632562 193632972 -88560692 - Charlie4a DNA MER1_type -45 463 1 260 329 0 0 chr1 193633512 193633582 -88560082 - MIR SINE MIR -104 104 35 389 290 9 0 chr1 193634164 193634271 -88559393 - MIR SINE MIR -68 140 33 337 254 187 22 chr1 193635010 193635144 -88558520 + L2 LINE L2 3114 3269 -3 1665 81 36 0 chr1 193635621 193635843 -88557821 + AluSx SINE Alu 1 230 -82 325 291 37 60 chr1 193637111 193637245 -88556419 - MIR SINE MIR -56 206 76 384 22 0 0 chr1 193637256 193637301 -88556363 + (TG)n Simple_repeat Simple_repeat 2 46 0 301 269 15 0 chr1 193637334 193637401 -88556263 - L1MC4 LINE L1 -1339 6703 6636 441 50 0 0 chr1 193637401 193637461 -88556203 + (GA)n Simple_repeat Simple_repeat 2 61 0 659 240 88 90 chr1 193637464 193637844 -88555820 - MER65A LTR ERV1 -1 444 64 2367 65 7 7 chr1 193637844 193638154 -88555510 - AluY SINE Alu -1 310 1 659 240 88 90 chr1 193638154 193638218 -88555446 - MER65A LTR ERV1 -381 64 1 2255 99 0 3 chr1 193638323 193638626 -88555038 + AluSx SINE Alu 1 302 -10 2155 113 0 0 chr1 193638640 193638940 -88554724 + AluSx SINE Alu 1 300 -12 1856 128 97 22 chr1 193639315 193639636 -88554028 - MSTB LTR MaLR -4 422 78 4531 125 120 12 chr1 193639754 193640569 -88553095 - MER4D LTR ERV1 0 903 1 220 196 89 0 chr1 193641043 193641099 -88552565 - L2 LINE L2 -7 3265 3205 2071 136 36 0 chr1 193641487 193641789 -88551875 - AluSp SINE Alu 0 313 1 233 350 64 14 chr1 193643174 193643394 -88550270 + L2 LINE L2 1962 2192 -1122 1020 204 122 44 chr1 193643394 193643878 -88549786 + MLT1F1 LTR MaLR 1 567 0 444 272 37 58 chr1 193644383 193644574 -88549090 + MIR SINE MIR 20 206 -56 2049 117 3 13 chr1 193644802 193645100 -88548564 - AluSx SINE Alu -17 295 1 635 319 35 4 chr1 193645291 193645517 -88548147 - MIR SINE MIR -25 237 5 562 229 21 21 chr1 193645760 193645904 -88547760 - MIR SINE MIR 0 262 119 234 331 66 8 chr1 193646041 193646162 -88547502 - MIR SINE MIR -48 214 87 29 0 0 0 chr1 193646727 193646756 -88546908 + AT_rich Low_complexity Low_complexity 1 29 0 899 139 0 0 chr1 193646756 193646878 -88546786 - AluJb SINE Alu -190 122 1 630 287 122 40 chr1 193646987 193647321 -88546343 - MLT1L LTR MaLR 0 615 135 1931 148 0 26 chr1 193647321 193647632 -88546032 - AluJo SINE Alu -9 303 1 630 287 122 40 chr1 193647632 193647702 -88545962 - MLT1L LTR MaLR -480 135 72 1028 134 0 47 chr1 193647930 193648102 -88545562 + FRAM SINE Alu 1 164 -12 27 0 0 0 chr1 193648141 193648168 -88545496 + AT_rich Low_complexity Low_complexity 1 27 0 1700 178 0 21 chr1 193648290 193648610 -88545054 - AluJo SINE Alu 0 315 2 321 269 161 16 chr1 193648707 193648893 -88544771 + L1ME4a LINE L1 5856 6068 -53 1975 225 20 16 chr1 193648914 193649359 -88544305 - L1ME1 LINE L1 -5 6161 5715 750 199 6 0 chr1 193649362 193649508 -88544156 - MLT1C LTR MaLR -3 464 235 1293 148 16 62 chr1 193650391 193650468 -88543196 - MLT1C LTR MaLR -234 233 154 2547 56 0 0 chr1 193650468 193650770 -88542894 + AluY SINE Alu 2 303 -8 1293 148 16 62 chr1 193650770 193650936 -88542728 - MLT1C LTR MaLR -313 154 1 1923 179 26 121 chr1 193650939 193651748 -88541916 - L1ME1 LINE L1 -455 5711 4963 233 220 0 0 chr1 193651807 193651857 -88541807 - L1M LINE L1 -968 5376 5327 618 305 77 65 chr1 193651864 193652343 -88541321 + L1MEd LINE L1 60 544 -5575 2114 126 3 10 chr1 193652383 193652693 -88540971 + AluSx SINE Alu 3 310 -2 365 247 48 100 chr1 193652944 193653175 -88540489 + L1MEd LINE L1 720 938 -5181 1039 170 0 0 chr1 193655108 193655279 -88538385 - AluSg/x SINE Alu -5 305 135 2061 154 3 0 chr1 193655284 193655590 -88538074 + AluSx SINE Alu 6 312 0 1080 178 112 0 chr1 193655729 193655926 -88537738 - MER20 DNA MER1_type 0 219 1 218 239 42 14 chr1 193656049 193656120 -88537544 + MIR SINE MIR 189 261 -1 232 254 16 16 chr1 193656142 193656205 -88537459 + GA-rich Low_complexity Low_complexity 1 63 0 2489 89 0 0 chr1 193656357 193656661 -88537003 + AluSx SINE Alu 1 304 -8 2542 70 0 0 chr1 193656793 193657093 -88536571 + AluY SINE Alu 1 300 -11 225 292 106 9 chr1 193657348 193657461 -88536203 - MIR SINE MIR -68 140 17 2135 115 0 7 chr1 193657711 193658026 -88535638 - AluSq SINE Alu 0 313 1 1612 187 27 3 chr1 193658165 193658459 -88535205 - AluJb SINE Alu -11 301 1 180 327 100 18 chr1 193658602 193658712 -88534952 + L3 LINE CR1 604 722 -855 1107 158 59 23 chr1 193659378 193659599 -88534065 + MER45B DNA AcHobo 1 229 -811 419 136 15 0 chr1 193659654 193659720 -88533944 - MER45B DNA AcHobo -725 315 249 1154 175 33 62 chr1 193659792 193659928 -88533736 + MER45B DNA AcHobo 327 455 -585 2145 130 0 3 chr1 193659928 193660227 -88533437 - AluSx SINE Alu -14 298 1 1154 175 33 62 chr1 193660227 193660330 -88533334 + MER45B DNA AcHobo 455 559 -481 341 43 21 0 chr1 193660350 193660397 -88533267 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 1302 166 59 38 chr1 193660397 193660413 -88533251 + MER45B DNA AcHobo 558 572 -468 2009 154 0 0 chr1 193660413 193660706 -88532958 - AluSx SINE Alu -19 293 1 1302 166 59 38 chr1 193660706 193660979 -88532685 + MER45B DNA AcHobo 572 853 -187 4857 127 15 4 chr1 193661017 193661747 -88531917 - L1MB3 LINE L1 -2 6181 5444 282 154 39 26 chr1 193661747 193661825 -88531839 + CT-rich Low_complexity Low_complexity 1 79 0 1691 140 44 60 chr1 193661825 193662140 -88531524 - AluSx SINE Alu -1 311 2 354 121 0 0 chr1 193662141 193662199 -88531465 - L1MB3 LINE L1 -731 5452 5395 331 202 11 22 chr1 193662199 193662288 -88531376 + MER45R DNA AcHobo 1433 1520 -61 372 167 30 0 chr1 193663723 193663789 -88529875 + MER45 DNA AcHobo 1513 1580 -1 1533 284 22 76 chr1 193664212 193664287 -88529377 - HERV16 LTR ERVL -4339 657 579 1989 179 0 0 chr1 193664287 193664599 -88529065 + AluJo SINE Alu 1 312 0 1533 284 22 76 chr1 193664599 193665218 -88528446 - HERV16 LTR ERVL -4417 579 1 1308 226 49 61 chr1 193665220 193665627 -88528037 - LTR16A1 LTR ERVL -2 455 54 416 302 127 38 chr1 193665637 193665742 -88527922 + LTR33 LTR ERVL 29 123 -398 2220 114 10 13 chr1 193665742 193666049 -88527615 + AluSx SINE Alu 1 306 -6 416 302 127 38 chr1 193666049 193666325 -88527339 + LTR33 LTR ERVL 123 488 -33 230 354 0 0 chr1 193666377 193666442 -88527222 - L2 LINE L2 -526 2788 2724 1981 165 0 0 chr1 193666583 193666886 -88526778 - AluJb SINE Alu -9 303 1 2441 69 0 28 chr1 193666945 193667262 -88526402 - AluY SINE Alu -3 308 1 439 325 39 21 chr1 193667264 193667498 -88526166 - HAL1b LINE L1 -808 540 303 43522 35 22 3 chr1 193668057 193672362 -88521302 - L1PA3 LINE L1 0 6155 1694 6740 52 34 63 chr1 193672362 193673917 -88519747 - SVA Other Other -839 1386 2 43522 35 22 3 chr1 193673917 193675645 -88518019 - L1PA3 LINE L1 -4461 1694 1 3608 264 105 5 chr1 193675889 193677013 -88516651 - L2 LINE L2 -337 2977 1742 1118 129 0 41 chr1 193677013 193677184 -88516480 + FRAM SINE Alu 1 163 -13 993 122 0 0 chr1 193677193 193677324 -88516340 + AluJo SINE Alu 2 132 -170 2521 65 10 0 chr1 193677355 193677661 -88516003 - AluY SINE Alu -1 310 2 1002 156 38 0 chr1 193677775 193677935 -88515729 + AluJo SINE Alu 137 302 -10 673 162 29 0 chr1 193677957 193678130 -88515534 + (TA)n Simple_repeat Simple_repeat 1 178 0 1792 179 10 3 chr1 193678680 193678977 -88514687 + AluJo SINE Alu 1 299 -13 180 196 22 0 chr1 193679053 193679099 -88514565 - L2 LINE L2 -938 2376 2330 353 211 0 14 chr1 193679961 193680032 -88513632 - L2 LINE L2 -3 3269 3200 43 35 0 0 chr1 193681629 193681686 -88511978 + AT_rich Low_complexity Low_complexity 1 57 0 315 49 0 0 chr1 193682609 193682650 -88511014 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 408 40 0 0 chr1 193682649 193682699 -88510965 + (TA)n Simple_repeat Simple_repeat 1 50 0 22 35 0 0 chr1 193683401 193683430 -88510234 + AT_rich Low_complexity Low_complexity 1 29 0 256 209 142 37 chr1 193683918 193684052 -88509612 + L1ME LINE L1 5721 5868 -253 3454 216 17 6 chr1 193684242 193684885 -88508779 + MER82 DNA MER2_type 4 653 0 762 204 43 52 chr1 193686500 193686730 -88506934 - L1ME1 LINE L1 -7 6159 5932 1563 124 5 0 chr1 193687241 193687450 -88506214 + AluSx SINE Alu 1 210 -102 804 141 16 0 chr1 193687450 193687578 -88506086 + AluSg/x SINE Alu 170 299 -13 23 86 0 0 chr1 193687588 193687646 -88506018 + AT_rich Low_complexity Low_complexity 1 58 0 1977 80 48 83 chr1 193687807 193688119 -88505545 + AluSp SINE Alu 6 306 -7 206 288 17 0 chr1 193688729 193688788 -88504876 - L2 LINE L2 -4 3268 3209 184 319 14 0 chr1 193689452 193689521 -88504143 - L2 LINE L2 0 3313 3244 1859 165 26 9 chr1 193691032 193691371 -88502293 + MER7A DNA MER2_type 1 343 -3 432 198 109 10 chr1 193691998 193692099 -88501565 - L2 LINE L2 -4 3309 3199 691 259 6 6 chr1 193692209 193692371 -88501293 + L2 LINE L2 3151 3312 -1 329 48 0 0 chr1 193692664 193692706 -88500958 - 5S rRNA rRNA -79 42 1 1554 207 21 3 chr1 193692774 193693064 -88500600 + AluJo SINE Alu 1 295 -17 200 351 53 30 chr1 193693547 193693678 -88499986 + L2 LINE L2 3179 3312 -1 1840 154 10 3 chr1 193693713 193694006 -88499658 + AluJb SINE Alu 1 295 -17 220 312 37 83 chr1 193694248 193694466 -88499198 - L2 LINE L2 -741 2573 2366 629 290 65 37 chr1 193694639 193694884 -88498780 + MIR SINE MIR 4 255 -7 1795 173 30 3 chr1 193694950 193695245 -88498419 + AluJo SINE Alu 1 303 -9 677 184 29 7 chr1 193695532 193695668 -88497996 + LTR24 LTR ERV1 286 424 -43 1175 236 168 0 chr1 193696522 193696832 -88496832 + REP3 LTR ERV 1 362 -200 623 167 23 53 chr1 193696842 193696974 -88496690 - FLAM_C SINE Alu -15 128 1 575 165 78 0 chr1 193696974 193697089 -88496575 + REP3 LTR ERV 381 504 -58 949 161 12 0 chr1 193697203 193697365 -88496299 + MLT1E1 LTR MaLR 491 654 0 1234 167 8 56 chr1 193698111 193698345 -88495319 - MER58A DNA MER1_type 0 224 2 443 194 60 0 chr1 193699647 193699781 -88493883 + L1ME1 LINE L1 3176 3317 -2829 * 560 186 35 0 chr1 193699779 193699892 -88493772 + L1MD3 LINE L1 7860 7976 -19 8835 123 12 52 chr1 193699899 193702149 -88491515 + L1P2 LINE L1 3509 5662 -492 6003 129 27 18 chr1 193702153 193703204 -88490460 - MER11C LTR ERVK -5 1066 7 4076 54 0 0 chr1 193703205 193703709 -88489955 + L1PA5 LINE L1 5651 6154 0 1495 201 70 30 chr1 193703711 193704139 -88489525 + L1ME1 LINE L1 4407 4851 -1295 2103 118 47 11 chr1 193704143 193704525 -88489139 - L1MB3 LINE L1 -3 6180 5785 577 210 0 42 chr1 193704539 193704658 -88489006 + AluSq/x SINE Alu 3 116 -196 2170 110 10 0 chr1 193704919 193705211 -88488453 - AluSx SINE Alu -17 295 1 2154 109 0 14 chr1 193705280 193705573 -88488091 - AluSg SINE Alu -21 289 1 2623 205 88 20 chr1 193705746 193706173 -88487491 + L1ME1 LINE L1 4846 5242 -924 1752 178 6 34 chr1 193706173 193706493 -88487171 + AluJo SINE Alu 1 311 -1 2623 205 88 20 chr1 193706493 193707223 -88486441 + L1ME1 LINE L1 5242 6073 -93 1895 164 92 9 chr1 193707240 193707588 -88486076 + MER44D DNA MER2_type 1 377 -328 323 197 14 14 chr1 193707585 193707656 -88486008 + MER44D DNA MER2_type 539 609 0 * 251 141 13 90 chr1 193707664 193707742 -88485922 + L1MA10 LINE L1 6263 6334 0 496 216 173 5 chr1 193708059 193708244 -88485420 - LTR50 LTR ERVL -577 218 3 1855 113 73 56 chr1 193708462 193708817 -88484847 - MER46B DNA MER2_type 0 236 1 302 189 0 0 chr1 193708829 193708882 -88484782 + MLT1D LTR MaLR 6 58 -447 1205 130 0 0 chr1 193708882 193709051 -88484613 - AluSg/x SINE Alu -11 299 131 569 191 45 0 chr1 193709055 193709165 -88484499 + MLT1D LTR MaLR 46 160 -345 194 57 57 0 chr1 193709178 193709213 -88484451 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1262 195 42 0 chr1 193709222 193709463 -88484201 + MLT1D LTR MaLR 255 505 0 319 289 50 90 chr1 193709465 193709766 -88483898 + HAL1b LINE L1 586 874 -474 1144 61 0 0 chr1 193710146 193710278 -88483386 + AluY SINE Alu 1 132 -179 450 287 248 31 chr1 193710312 193710429 -88483235 - L2 LINE L2 -4 3309 3219 1851 26 0 18 chr1 193710429 193710657 -88483007 + L1PA4 LINE L1 5932 6155 0 450 287 248 31 chr1 193710657 193710825 -88482839 - L2 LINE L2 -94 3219 2962 566 302 81 37 chr1 193710846 193711276 -88482388 + L1MB8 LINE L1 2111 2559 -3587 240 286 189 14 chr1 193711374 193711462 -88482202 + L1MB8 LINE L1 2750 2821 -3325 1753 158 0 62 chr1 193711462 193711785 -88481879 + AluJo SINE Alu 1 303 -9 240 286 189 14 chr1 193711785 193711913 -88481751 + L1MB8 LINE L1 2821 3004 -3142 368 244 98 11 chr1 193712023 193712304 -88481360 + L1MB8 LINE L1 5122 5423 -728 1635 133 35 42 chr1 193712399 193712715 -88480949 + AluJb SINE Alu 1 314 0 3433 174 50 22 chr1 193712860 193713237 -88480427 + L1MB8 LINE L1 5433 5798 -380 2282 76 0 0 chr1 193713237 193713512 -88480152 + AluSx SINE Alu 29 303 -9 3433 174 50 22 chr1 193713512 193713860 -88479804 + L1MB8 LINE L1 5798 6178 0 21 57 0 0 chr1 193713886 193713921 -88479743 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr1 193714091 193714149 -88479515 + AT_rich Low_complexity Low_complexity 1 58 0 24 0 0 0 chr1 193714529 193714553 -88479111 + AT_rich Low_complexity Low_complexity 1 24 0 2243 125 0 0 chr1 193715113 193715410 -88478254 - AluSx SINE Alu -15 297 1 261 301 48 0 chr1 193715722 193715805 -88477859 - L2 LINE L2 -1335 1979 1893 414 0 0 0 chr1 193715872 193715918 -88477746 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 1825 184 0 3 chr1 193715918 193716217 -88477447 + AluJb SINE Alu 1 298 -14 412 242 202 0 chr1 193716389 193716488 -88477176 + L2 LINE L2 3153 3271 -1 478 219 223 33 chr1 193716746 193717020 -88476644 + MER46C DNA MER2_type 13 338 0 1431 199 40 11 chr1 193717212 193717489 -88476175 - AluJo SINE Alu -25 287 3 343 321 66 15 chr1 193717726 193717863 -88475801 + L2 LINE L2 2767 2910 -404 3677 163 79 23 chr1 193718225 193718960 -88474704 + MER21B LTR ERV1 1 776 -87 357 205 48 0 chr1 193719021 193719104 -88474560 + MER103 DNA DNA 31 117 -49 279 323 21 11 chr1 193719231 193719324 -88474340 - MIR SINE MIR -16 246 153 262 305 91 13 chr1 193721735 193721889 -88471775 - MIR3 SINE MIR -11 197 32 304 234 56 65 chr1 193722413 193722520 -88471144 - MER5B DNA MER1_type 0 178 73 950 200 0 0 chr1 193722749 193722909 -88470755 - FRAM SINE Alu -6 160 1 311 374 26 0 chr1 193723394 193723509 -88470155 - HAL1 LINE L1 -1964 543 426 596 261 63 13 chr1 193723512 193723750 -88469914 - HAL1 LINE L1 -2118 389 140 1785 144 15 0 chr1 193724072 193724342 -88469322 + AluSx SINE Alu 25 298 -14 691 281 80 38 chr1 193724695 193725093 -88468571 + L1MC4a LINE L1 5507 5921 -1887 315 0 0 0 chr1 193725098 193725133 -88468531 + (CA)n Simple_repeat Simple_repeat 1 35 0 1562 203 101 3 chr1 193725162 193725517 -88468147 + MLT1B LTR MaLR 1 390 0 744 255 15 12 chr1 193726416 193726675 -88466989 - L1MC4 LINE L1 -89 7953 7694 30 0 0 0 chr1 193726760 193726790 -88466874 + AT_rich Low_complexity Low_complexity 1 30 0 2022 105 22 7 chr1 193727302 193727579 -88466085 + AluSx SINE Alu 1 281 -31 231 352 66 11 chr1 193727838 193727929 -88465735 - L2 LINE L2 -36 3277 3182 5908 131 94 25 chr1 193727946 193728501 -88465163 + Tigger3b DNA MER2_type 1 516 -2512 2078 148 3 0 chr1 193728501 193728806 -88464858 + AluJb SINE Alu 3 308 -4 5908 131 94 25 chr1 193728806 193729402 -88464262 + Tigger3b DNA MER2_type 516 1231 0 281 148 0 123 chr1 193729724 193729805 -88463859 - L1MA9 LINE L1 -410 5890 5820 1648 146 35 60 chr1 193729805 193730120 -88463544 - AluSq SINE Alu -6 307 1 1008 114 0 0 chr1 193730122 193730254 -88463410 - AluSq/x SINE Alu -180 132 1 2407 94 0 3 chr1 193730284 193730592 -88463072 - AluSc SINE Alu -2 307 1 2229 125 0 3 chr1 193731696 193732000 -88461664 - AluSx SINE Alu -9 303 1 990 189 6 0 chr1 193732242 193732406 -88461258 - AluJb SINE Alu -14 298 134 210 162 0 0 chr1 193732602 193732639 -88461025 + T-rich Low_complexity Low_complexity 1 37 0 339 235 113 20 chr1 193733625 193733833 -88459831 - MLT1H LTR MaLR -69 480 233 353 232 152 67 chr1 193734108 193734332 -88459332 + MIR SINE MIR 16 258 -4 2181 111 129 0 chr1 193736149 193736482 -88457182 - MER83B LTR ERV1 -2 376 1 25281 95 30 17 chr1 193736482 193738467 -88455197 - MER83B-int LTR ERV1 -11 4869 2911 2392 82 7 0 chr1 193738467 193738770 -88454894 - AluY SINE Alu -6 305 1 25281 95 30 17 chr1 193738770 193738922 -88454742 - MER83B-int LTR ERV1 -1969 2911 2762 2223 124 0 0 chr1 193738922 193739221 -88454443 - AluSg SINE Alu -11 299 1 25281 95 30 17 chr1 193739221 193739873 -88453791 - MER83B-int LTR ERV1 -2118 2762 2120 2278 38 42 7 chr1 193739873 193740161 -88453503 - AluY SINE Alu -12 299 2 25281 95 30 17 chr1 193740161 193741216 -88452448 - MER83B-int LTR ERV1 -2760 2120 973 5159 156 83 13 chr1 193742365 193743277 -88450387 - MER83B-int LTR ERV1 -3893 987 12 1534 111 74 21 chr1 193743279 193743594 -88450070 - MER83B LTR ERV1 -2 376 1 586 165 9 0 chr1 193743622 193743731 -88449933 + L1MA6 LINE L1 5746 5855 -448 1192 102 0 61 chr1 193743878 193744099 -88449565 - L1MA6 LINE L1 -469 5833 5627 2811 94 34 43 chr1 193744099 193744426 -88449238 + L1MA6 LINE L1 5835 6163 -137 2091 121 19 0 chr1 193744426 193744733 -88448931 + AluSq SINE Alu 1 313 0 2811 94 34 43 chr1 193744733 193744867 -88448797 + L1MA6 LINE L1 6163 6297 -3 32 26 0 0 chr1 193744884 193744923 -88448741 + AT_rich Low_complexity Low_complexity 1 39 0 1663 129 0 4 chr1 193744938 193745179 -88448485 - L1PB3 LINE L1 -6 6148 5909 2353 101 3 0 chr1 193745973 193746280 -88447384 + AluSx SINE Alu 1 308 -4 321 26 0 0 chr1 193747417 193747455 -88446209 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1824 166 169 3 chr1 193747683 193748050 -88445614 - MSTA LTR MaLR 0 428 1 775 189 8 0 chr1 193748235 193748367 -88445297 - FRAM SINE Alu -30 146 14 2125 148 0 0 chr1 193749508 193749806 -88443858 - AluSx SINE Alu -14 298 1 1956 152 102 28 chr1 193749811 193750174 -88443490 + LTR57 LTR ERVL 22 411 0 1734 205 43 53 chr1 193750200 193750692 -88442972 - Charlie4a DNA MER1_type -20 488 2 269 263 121 0 chr1 193750976 193751075 -88442589 - MIR SINE MIR -18 244 134 1454 182 0 82 chr1 193751166 193751530 -88442134 + AluJb SINE Alu 1 312 0 638 325 88 10 chr1 193751531 193751839 -88441825 - L2 LINE L2 -84 3229 2898 1881 140 0 11 chr1 193751892 193752202 -88441462 + AluSx SINE Alu 1 307 0 4761 156 50 5 chr1 193752202 193753373 -88440291 - L1MB2 LINE L1 -36 6135 4912 283 303 264 0 chr1 193753380 193753558 -88440106 - L2 LINE L2 -400 2914 2690 2420 191 60 31 chr1 193753560 193754073 -88439591 + L1MB7 LINE L1 5586 6119 -65 1628 168 0 77 chr1 193754073 193754400 -88439264 - AluJo SINE Alu -10 302 1 2420 191 60 31 chr1 193754400 193754468 -88439196 + L1MB7 LINE L1 6119 6184 0 28 0 0 0 chr1 193754653 193754681 -88438983 + AT_rich Low_complexity Low_complexity 1 28 0 1793 172 0 22 chr1 193755861 193756175 -88437489 + AluJo SINE Alu 3 309 -3 1785 198 72 45 chr1 193757036 193757342 -88436322 - MLT1D LTR MaLR -1 504 179 1573 88 55 5 chr1 193757342 193757559 -88436105 + AluSg/x SINE Alu 85 312 0 1785 198 72 45 chr1 193757559 193757737 -88435927 - MLT1D LTR MaLR -326 179 7 297 261 22 22 chr1 193758688 193758780 -88434884 + L2 LINE L2 3181 3272 0 2253 108 0 6 chr1 193758813 193759127 -88434537 - AluSx SINE Alu 0 312 1 949 163 43 22 chr1 193759433 193759617 -88434047 + MER5A DNA MER1_type 1 188 -1 1502 165 55 11 chr1 193759835 193760107 -88433557 + AluJb SINE Alu 7 290 -22 2250 87 10 0 chr1 193761512 193761801 -88431863 + AluJo SINE Alu 1 292 -20 373 265 65 70 chr1 193762140 193762370 -88431294 - MIR SINE MIR -10 252 24 329 43 21 0 chr1 193763769 193763816 -88429848 + (CTGGGG)n Simple_repeat Simple_repeat 5 52 0 217 238 60 24 chr1 193764085 193764169 -88429495 + MIR SINE MIR 30 116 -92 428 284 219 5 chr1 193764184 193764399 -88429265 + MIR SINE MIR 2 262 0 746 259 18 22 chr1 193764594 193764818 -88428846 + MIR SINE MIR 6 228 -34 1241 136 0 75 chr1 193765882 193766110 -88427554 - AluJb SINE Alu -15 297 87 941 188 24 29 chr1 193767571 193767778 -88425886 + MER3 DNA MER1_type 4 209 0 191 317 197 24 chr1 193768665 193768873 -88424791 + MIR SINE MIR 4 247 -15 381 266 25 68 chr1 193769033 193769130 -88424534 + MER63 DNA MER1_type 12 112 -1576 1926 164 120 8 chr1 193769130 193769513 -88424151 - MSTB LTR MaLR 0 426 1 381 266 25 68 chr1 193769513 193769612 -88424052 + MER63 DNA MER1_type 112 1688 0 1647 166 50 0 chr1 193770710 193770987 -88422677 - AluJb SINE Alu -21 291 1 375 296 24 16 chr1 193771584 193771709 -88421955 - L2 LINE L2 -1 3271 3146 915 186 10 36 chr1 193771893 193772087 -88421577 + MER20 DNA MER1_type 31 219 0 236 258 16 0 chr1 193772531 193772593 -88421071 + MIR SINE MIR 191 253 -9 348 206 74 132 chr1 193773124 193773313 -88420351 - MER5B DNA MER1_type 0 178 1 2067 213 58 42 chr1 193773817 193774049 -88419615 - L1ME3A LINE L1 -35 6135 5908 1992 143 0 20 chr1 193774049 193774349 -88419315 - AluJo SINE Alu -18 294 1 2067 213 58 42 chr1 193774349 193774707 -88418957 - L1ME3A LINE L1 -262 5908 5536 201 314 169 8 chr1 193774783 193774901 -88418763 - MIR SINE MIR -119 143 7 1732 116 48 82 chr1 193775096 193775390 -88418274 - AluSx SINE Alu -28 284 1 183 161 0 0 chr1 193776681 193776712 -88416952 - L2 LINE L2 -17 3255 3225 277 188 12 59 chr1 193776746 193776831 -88416833 - MIR SINE MIR 0 262 182 406 174 186 23 chr1 193777086 193777172 -88416492 - Tigger5 DNA MER2_type 0 2323 2224 963 175 71 11 chr1 193777411 193777594 -88416070 - AluJb SINE Alu -7 305 112 442 133 0 0 chr1 193777594 193777654 -88416010 - AluS SINE Alu -257 61 2 407 246 97 111 chr1 193778292 193778499 -88415165 - MER102b DNA MER1_type -3 338 135 336 48 0 0 chr1 193778500 193778542 -88415122 + (TG)n Simple_repeat Simple_repeat 2 43 0 2010 155 0 0 chr1 193779050 193779347 -88414317 - AluJb SINE Alu -14 298 2 755 158 38 66 chr1 193779355 193779389 -88414275 - MER5B DNA MER1_type 0 178 145 1845 186 48 79 chr1 193779389 193779910 -88413754 + MLT1D LTR MaLR 1 505 0 755 158 38 66 chr1 193779910 193780058 -88413606 - MER5B DNA MER1_type -33 145 1 1589 224 55 20 chr1 193781337 193781788 -88411876 + MLT1C LTR MaLR 1 467 0 588 217 179 69 chr1 193782008 193782298 -88411366 + MER102b DNA MER1_type 19 340 -1 266 317 19 10 chr1 193782424 193782528 -88411136 + MER5B DNA MER1_type 3 107 -71 239 277 31 0 chr1 193782554 193782619 -88411045 - MER5A DNA MER1_type -86 103 37 423 267 30 23 chr1 193783894 193784025 -88409639 - L2 LINE L2 0 3313 3182 551 210 0 16 chr1 193785395 193785519 -88408145 - L1MA10 LINE L1 -3 6331 6210 893 163 20 7 chr1 193785520 193785673 -88407991 + FRAM SINE Alu 1 151 -25 206 77 0 51 chr1 193785673 193785712 -88407952 + (TA)n Simple_repeat Simple_repeat 1 37 0 506 224 5 109 chr1 193785712 193785904 -88407760 - L1ME2 LINE L1 -119 6045 5874 575 132 23 23 chr1 193785913 193786042 -88407622 + CT-rich Low_complexity Low_complexity 1 129 0 1096 267 3 10 chr1 193786057 193786265 -88407399 - L1MEc LINE L1 -6071 325 118 2332 113 3 0 chr1 193786265 193786576 -88407088 + AluSx SINE Alu 1 312 0 1096 267 3 10 chr1 193786576 193786659 -88407005 - L1MEc LINE L1 -6278 118 36 189 333 49 0 chr1 193786862 193786943 -88406721 + MIR SINE MIR 40 124 -84 209 288 0 38 chr1 193787096 193787176 -88406488 + L2 LINE L2 3237 3313 0 23 33 0 0 chr1 193788234 193788264 -88405400 + AT_rich Low_complexity Low_complexity 1 30 0 434 270 108 32 chr1 193788569 193788754 -88404910 + MIR SINE MIR 20 218 -44 270 286 87 36 chr1 193789320 193789485 -88404179 + MIR SINE MIR 17 192 -63 994 198 0 11 chr1 193789569 193789746 -88403918 + FAM SINE Alu 1 175 0 1853 156 0 36 chr1 193790027 193790335 -88403329 - AluJo SINE Alu -15 297 1 535 241 44 25 chr1 193790428 193790586 -88403078 - MIR SINE MIR 0 262 102 270 0 0 0 chr1 193790801 193790831 -88402833 + (CA)n Simple_repeat Simple_repeat 2 31 0 404 283 47 23 chr1 193791395 193791587 -88402077 + L3 LINE CR1 1381 1576 -1 696 285 49 85 chr1 193791642 193792172 -88401492 + MLT1J LTR MaLR 1 511 0 519 332 20 15 chr1 193792202 193792404 -88401260 + MIR SINE MIR 47 249 -13 23 86 0 0 chr1 193792545 193792603 -88401061 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr1 193792638 193792668 -88400996 + AT_rich Low_complexity Low_complexity 1 30 0 253 304 141 22 chr1 193792717 193792852 -88400812 + MER5A DNA MER1_type 36 186 -3 195 260 0 130 chr1 193793326 193793403 -88400261 - L2 LINE L2 -2 3270 3204 2201 122 14 0 chr1 193793427 193793723 -88399941 + AluSx SINE Alu 1 300 -12 508 88 0 88 chr1 193793752 193793843 -88399821 + HY3 scRNA scRNA 13 95 -6 180 0 0 0 chr1 193793848 193793868 -88399796 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 475 323 158 16 chr1 193794003 193794589 -88399075 - L2 LINE L2 -204 3068 2383 395 220 22 22 chr1 193794605 193794696 -88398968 + MIR SINE MIR 56 146 -62 37 43 0 14 chr1 193795080 193795101 -88398563 + AT_rich Low_complexity Low_complexity 1 21 -47 709 65 0 0 chr1 193795101 193795194 -88398470 + L1PA8 LINE L1 6067 6159 -13 37 43 0 14 chr1 193795194 193795241 -88398423 + AT_rich Low_complexity Low_complexity 21 68 0 256 394 86 17 chr1 193795281 193795631 -88398033 + L2 LINE L2 2895 3268 -4 251 216 31 10 chr1 193795741 193795838 -88397826 + CT-rich Low_complexity Low_complexity 3 101 0 21 0 0 0 chr1 193795941 193795962 -88397702 + AT_rich Low_complexity Low_complexity 1 21 0 348 331 32 24 chr1 193796010 193796134 -88397530 + L2 LINE L2 3139 3263 -9 338 320 114 48 chr1 193796227 193796372 -88397292 + MIR SINE MIR 1 168 -94 297 0 0 0 chr1 193796372 193796405 -88397259 + (CA)n Simple_repeat Simple_repeat 2 34 0 338 320 114 48 chr1 193796405 193796487 -88397177 + MIR SINE MIR 168 243 -19 1225 271 82 12 chr1 193797401 193797888 -88395776 - LTR33 LTR ERVL 0 521 1 238 257 174 21 chr1 193797898 193798042 -88395622 + MIR SINE MIR 92 257 -5 332 43 0 21 chr1 193798293 193798340 -88395324 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 42 0 0 chr1 193798402 193798426 -88395238 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 226 309 99 0 chr1 193798653 193798734 -88394930 + L2 LINE L2 3180 3268 -4 187 54 54 0 chr1 193799148 193799185 -88394479 + A-rich Low_complexity Low_complexity 2 40 0 4047 161 26 14 chr1 193799737 193800536 -88393128 - L1MB5 LINE L1 0 6174 5366 941 269 93 16 chr1 193802330 193802694 -88390970 + MLT1J1 LTR MaLR 21 412 -34 800 212 1 6 chr1 193802908 193803092 -88390572 + L1PA16 LINE L1 5979 6156 -5 304 154 200 0 chr1 193803102 193803167 -88390497 - MLT1H1 LTR MaLR -44 511 434 593 206 30 124 chr1 193803362 193803595 -88390069 - L2 LINE L2 -2 3311 3101 887 147 37 18 chr1 193803648 193803811 -88389853 - FRAM SINE Alu 0 176 11 1798 283 77 17 chr1 193804256 193804910 -88388754 - L2 LINE L2 -227 3086 2395 4302 269 61 25 chr1 193804934 193805394 -88388270 - L2 LINE L2 -1626 1688 1246 1923 100 91 26 chr1 193805394 193805744 -88387920 - THE1C LTR MaLR -2 373 1 10206 114 41 8 chr1 193805744 193807274 -88386390 - THE1C-int LTR MaLR 0 1580 1 1872 128 75 33 chr1 193807274 193807634 -88386030 - THE1C LTR MaLR 0 375 1 4302 269 61 25 chr1 193807634 193808331 -88385333 - L2 LINE L2 -2068 1246 465 2262 51 0 27 chr1 193808331 193808657 -88385007 + AluY SINE Alu 1 318 0 4302 269 61 25 chr1 193808657 193808904 -88384760 - L2 LINE L2 -2849 465 228 249 236 236 52 chr1 193810869 193811043 -88382621 - MIR SINE MIR -33 229 24 269 330 0 28 chr1 193811229 193811335 -88382329 + MIR SINE MIR 62 164 -98 544 0 28 14 chr1 193811693 193811765 -88381899 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 2160 110 10 26 chr1 193811768 193812078 -88381586 - AluSx SINE Alu -7 305 1 1742 183 10 7 chr1 193812122 193812423 -88381241 - AluJb SINE Alu -10 302 1 900 216 135 27 chr1 193812690 193812949 -88380715 - L1ME1 LINE L1 -3 6163 5877 1995 141 10 0 chr1 193813163 193813462 -88380202 - AluSx SINE Alu -10 302 1 26 30 0 0 chr1 193813641 193813674 -88379990 + AT_rich Low_complexity Low_complexity 1 33 0 228 202 115 29 chr1 193813816 193813920 -88379744 - L1ME LINE L1 -205 5916 5804 523 282 93 62 chr1 193814681 193814821 -88378843 - MARNA DNA Mariner -8 578 444 2234 127 0 13 chr1 193814821 193815136 -88378528 + AluSx SINE Alu 1 311 -1 523 282 93 62 chr1 193815136 193815513 -88378151 - MARNA DNA Mariner -142 444 45 2065 152 33 30 chr1 193815720 193816083 -88377581 - THE1B LTR MaLR 0 364 1 216 302 58 12 chr1 193816452 193816538 -88377126 + L2 LINE L2 3178 3267 -46 973 215 15 5 chr1 193816636 193816836 -88376828 - MLT1A2 LTR MaLR 0 374 173 529 224 88 47 chr1 193816883 193816974 -88376690 - MLT1A2 LTR MaLR -193 181 95 1808 142 82 17 chr1 193816974 193817326 -88376338 + THE1C LTR MaLR 1 375 0 529 224 88 47 chr1 193817326 193817404 -88376260 - MLT1A2 LTR MaLR -279 95 5 186 243 216 27 chr1 193817462 193817536 -88376128 - L2 LINE L2 -23 3249 3162 569 170 0 0 chr1 193817537 193817637 -88376027 - MLT1D LTR MaLR 0 626 527 2148 124 0 29 chr1 193817643 193817950 -88375714 + AluSx SINE Alu 1 298 -14 1097 194 119 31 chr1 193817950 193818269 -88375395 - MLT1D LTR MaLR -145 360 14 195 129 0 0 chr1 193818343 193818374 -88375290 + (TA)n Simple_repeat Simple_repeat 2 32 0 1663 172 108 10 chr1 193819199 193819605 -88374059 - L1ME2 LINE L1 -6 6158 5713 324 350 82 21 chr1 193819664 193819955 -88373709 - L2 LINE L2 -946 2368 2060 246 238 16 0 chr1 193820369 193820432 -88373232 + (TGG)n Simple_repeat Simple_repeat 2 65 0 420 291 104 90 chr1 193820557 193821263 -88372401 - L1M2 LINE L1 -5465 1384 667 867 266 19 41 chr1 193824129 193824396 -88369268 - MIR SINE MIR 0 262 2 1780 179 3 16 chr1 193824491 193824799 -88368865 + AluJo SINE Alu 1 304 -8 315 321 11 11 chr1 193826142 193826248 -88367416 - MIR SINE MIR -46 162 56 324 0 0 0 chr1 193827120 193827156 -88366508 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 330 137 13 chr1 193828435 193828662 -88365002 + MIR SINE MIR 6 260 -2 218 361 105 27 chr1 193830317 193830536 -88363128 + L2 LINE L2 3019 3254 -18 2125 113 0 14 chr1 193830645 193830937 -88362727 - AluSx SINE Alu -24 288 1 557 236 28 0 chr1 193831023 193831167 -88362497 - MER112 DNA MER1_type -112 148 1 228 264 42 14 chr1 193831625 193831697 -88361967 - L2 LINE L2 -2 3311 3238 709 299 74 22 chr1 193831794 193832105 -88361559 + L3 LINE CR1 1219 1545 -32 243 0 0 0 chr1 193832107 193832134 -88361530 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1824 172 0 10 chr1 193832387 193832690 -88360974 - AluJb SINE Alu -12 300 1 23 54 0 0 chr1 193832692 193832729 -88360935 + AT_rich Low_complexity Low_complexity 1 37 0 1058 207 27 10 chr1 193833379 193833611 -88360053 + MIR SINE MIR 1 236 -26 531 81 0 14 chr1 193833715 193833789 -88359875 - Alu SINE Alu -14 296 224 1434 114 48 0 chr1 193833880 193834090 -88359574 - AluSq SINE Alu -93 220 1 5899 140 32 13 chr1 193834100 193836095 -88357569 - L1PA14 LINE L1 -3 6158 4145 184 188 58 72 chr1 193836665 193836734 -88356930 + L3 LINE CR1 993 1060 -517 1510 189 18 67 chr1 193836964 193837350 -88356314 + MLT1A2 LTR MaLR 4 370 -4 344 347 20 14 chr1 193837787 193837934 -88355730 - MER5B DNA MER1_type -29 149 2 250 211 0 0 chr1 193837993 193838050 -88355614 + L2 LINE L2 1853 1909 -1405 430 367 58 18 chr1 193838060 193838335 -88355329 + L2 LINE L2 2521 2806 -508 243 295 155 31 chr1 193838563 193838692 -88354972 + L2 LINE L2 3078 3222 -50 194 339 0 0 chr1 193838730 193838789 -88354875 + L2 LINE L2 1917 1975 -1339 962 270 113 37 chr1 193838791 193839354 -88354310 - L2 LINE L2 -20 3293 2686 289 196 178 47 chr1 193839358 193839465 -88354199 + Charlie5 DNA MER1_type 3 123 -2489 1499 169 52 18 chr1 193839480 193839823 -88353841 + Charlie5 DNA MER1_type 2263 2617 0 1146 291 110 2 chr1 193839827 193840273 -88353391 - L2 LINE L2 -619 2695 2202 4065 185 37 16 chr1 193840275 193841970 -88351694 + L1MB7 LINE L1 4442 6165 -19 463 326 102 48 chr1 193842124 193842710 -88350954 - L2 LINE L2 -1425 1889 1272 321 343 146 16 chr1 193842747 193843087 -88350577 + L2 LINE L2 2679 3066 -206 188 191 48 0 chr1 193843228 193843270 -88350394 + MIR SINE MIR 109 152 -110 29 0 0 0 chr1 193844288 193844317 -88349347 + AT_rich Low_complexity Low_complexity 1 29 0 2098 139 3 3 chr1 193844457 193844767 -88348897 + AluJb SINE Alu 1 310 -2 275 370 50 8 chr1 193845698 193845817 -88347847 - L2 LINE L2 -8 3264 3141 1216 232 57 19 chr1 193847055 193847421 -88346243 - HsTC2 DNA Tc2 0 1898 1519 2404 74 3 0 chr1 193848009 193848306 -88345358 - AluSx SINE Alu -14 298 1 258 121 0 69 chr1 193849628 193849727 -88343937 + Alu SINE Alu 248 342 0 1224 264 78 3 chr1 193850454 193850787 -88342877 - MER20B DNA MER1_type -311 472 115 216 269 231 45 chr1 193852374 193852530 -88341134 + MIR SINE MIR 74 258 -4 606 272 80 65 chr1 193852570 193852846 -88340818 - L2 LINE L2 -8 3305 3026 210 254 0 0 chr1 193853444 193853511 -88340153 + (TA)n Simple_repeat Simple_repeat 2 68 0 4519 104 9 14 chr1 193853889 193854554 -88339110 - L1PA16 LINE L1 -11 6155 5494 940 256 22 4 chr1 193854765 193854992 -88338672 + MIR SINE MIR 3 233 -29 2348 81 0 0 chr1 193855037 193855332 -88338332 - AluSc SINE Alu -14 295 1 531 242 57 44 chr1 193855340 193855567 -88338097 + L1MC5 LINE L1 7706 7935 -26 27 49 0 0 chr1 193857293 193857334 -88336330 + AT_rich Low_complexity Low_complexity 1 41 0 258 316 32 11 chr1 193859192 193859287 -88334377 - LTR67 LTR ERVL -362 195 99 21 0 0 0 chr1 193859478 193859499 -88334165 + AT_rich Low_complexity Low_complexity 1 21 0 1154 238 175 17 chr1 193861225 193861288 -88332376 - L1MC4 LINE L1 -2 8040 7988 2503 51 14 0 chr1 193861288 193861582 -88332082 + AluSp SINE Alu 1 298 -15 1154 238 175 17 chr1 193861582 193861654 -88332010 - L1MC4 LINE L1 -54 7988 7929 321 26 0 0 chr1 193861654 193861692 -88331972 + (CA)n Simple_repeat Simple_repeat 2 39 0 1154 238 175 17 chr1 193861692 193862018 -88331646 - L1MC4 LINE L1 -113 7929 7505 551 230 143 4 chr1 193862223 193862453 -88331211 - L1ME4a LINE L1 -157 5964 5703 591 252 0 0 chr1 193862460 193862583 -88331081 + FLAM_A SINE Alu 8 130 -12 459 0 0 0 chr1 193862587 193862638 -88331026 + (CA)n Simple_repeat Simple_repeat 1 51 0 2403 101 0 0 chr1 193862685 193862993 -88330671 - AluSg SINE Alu -2 308 1 591 232 106 42 chr1 193863732 193864176 -88329488 - MLT1H LTR MaLR -15 534 1 1093 320 42 50 chr1 193864749 193865227 -88328437 + MER115 DNA AcHobo 2 475 -218 481 242 105 33 chr1 193866405 193866558 -88327106 - MIR3 SINE MIR -5 203 40 22 0 0 0 chr1 193866835 193866857 -88326807 + AT_rich Low_complexity Low_complexity 1 22 0 190 355 62 33 chr1 193867127 193867338 -88326326 - L3b LINE CR1 -75 1508 1292 197 333 0 0 chr1 193867473 193867524 -88326140 - MIR SINE MIR -112 96 46 218 248 200 64 chr1 193867729 193867854 -88325810 + MIR SINE MIR 70 211 -51 1723 176 3 13 chr1 193868200 193868502 -88325162 - AluJb SINE Alu -13 299 1 200 111 0 28 chr1 193868549 193868585 -88325079 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 193 258 135 34 chr1 193868984 193869073 -88324591 + L3 LINE CR1 1403 1500 -77 201 158 0 0 chr1 193870020 193870058 -88323606 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 526 153 0 12 chr1 193870107 193870192 -88323472 - AluJ/FLAM SINE Alu -228 84 1 7267 149 93 66 chr1 193870502 193871088 -88322576 - L1MC3 LINE L1 0 7785 7216 298 258 0 0 chr1 193871088 193871154 -88322510 - MLT1F1 LTR MaLR -450 117 52 7267 149 93 66 chr1 193871154 193871385 -88322279 - L1MC3 LINE L1 -569 7216 6993 222 91 0 0 chr1 193871385 193871418 -88322246 + (TG)n Simple_repeat Simple_repeat 2 34 0 7267 149 93 66 chr1 193871418 193871919 -88321745 - L1MC3 LINE L1 -792 6993 6346 1605 185 46 9 chr1 193871919 193872244 -88321420 - MER1B DNA MER1_type 0 337 1 7267 149 93 66 chr1 193872244 193872536 -88321128 - L1MC3 LINE L1 -1439 6346 6063 217 116 47 0 chr1 193872554 193872597 -88321067 + T-rich Low_complexity Low_complexity 3 47 0 1888 159 17 20 chr1 193872677 193872978 -88320686 - AluJo SINE Alu -12 300 1 1481 109 0 0 chr1 193873152 193873345 -88320319 - AluSc SINE Alu -116 193 1 1021 111 0 0 chr1 193873346 193873481 -88320183 - AluSq/x SINE Alu -177 135 1 1208 134 0 5 chr1 193873620 193873807 -88319857 - AluY SINE Alu -4 307 122 10373 36 0 8 chr1 193873817 193875906 -88317758 - L1PA8 LINE L1 -8 6164 4119 379 207 74 8 chr1 193877727 193877848 -88315816 - L1ME4a LINE L1 0 6121 5993 192 222 44 0 chr1 193878762 193878807 -88314857 - L2 LINE L2 -212 3060 3014 623 322 93 55 chr1 193878878 193879297 -88314367 - L2 LINE L2 0 3272 2838 190 317 280 20 chr1 193879412 193879951 -88313713 - L2 LINE L2 -925 2389 1711 2476 45 3 16 chr1 193880051 193880363 -88313301 + AluY SINE Alu 1 308 -3 21 0 0 0 chr1 193881244 193881265 -88312399 + AT_rich Low_complexity Low_complexity 1 21 0 1644 167 0 7 chr1 193882109 193882384 -88311280 + AluJo SINE Alu 16 288 -24 28 0 0 0 chr1 193882384 193882412 -88311252 + AT_rich Low_complexity Low_complexity 1 28 0 265 205 96 24 chr1 193882754 193882837 -88310827 - MIR SINE MIR -98 164 76 1877 134 17 17 chr1 193883249 193883548 -88310116 + AluJb SINE Alu 1 299 -13 186 336 78 35 chr1 193884433 193884549 -88309115 + L2 LINE L2 2915 3035 -237 1901 169 0 0 chr1 193885351 193885647 -88308017 - AluJb SINE Alu -12 300 5 385 313 55 25 chr1 193886017 193886180 -88307484 - MIR SINE MIR -48 214 47 1117 286 60 25 chr1 193886243 193886433 -88307231 + L2 LINE L2 2517 2699 -614 2350 86 3 0 chr1 193886433 193886734 -88306930 + AluSp SINE Alu 1 302 -11 1117 286 60 25 chr1 193886734 193887001 -88306663 + L2 LINE L2 2699 3074 -239 537 276 60 26 chr1 193887198 193887430 -88306234 + MER112 DNA MER1_type 20 259 -1 24 53 0 0 chr1 193887858 193887896 -88305768 + AT_rich Low_complexity Low_complexity 1 38 0 349 188 10 10 chr1 193888122 193888218 -88305446 + CT-rich Low_complexity Low_complexity 4 99 0 247 214 225 34 chr1 193888218 193888307 -88305357 - L2 LINE L2 -9 3263 3158 2087 114 27 17 chr1 193888382 193888679 -88304985 + AluSx SINE Alu 1 300 -12 210 357 41 10 chr1 193888705 193888803 -88304861 - MIR3 SINE MIR -23 185 85 1244 211 148 82 chr1 193889434 193889752 -88303912 + Tigger7 DNA MER2_type 1 2491 0 222 245 0 0 chr1 193889901 193889950 -88303714 + (TAA)n Simple_repeat Simple_repeat 2 50 0 180 254 17 17 chr1 193890084 193890143 -88303521 - L2 LINE L2 -191 3081 3023 2369 91 0 7 chr1 193890497 193890806 -88302858 - AluSq SINE Alu -6 307 1 655 221 80 58 chr1 193891404 193891630 -88302034 + MER106A DNA MER1_type 6 236 0 658 248 92 99 chr1 193891682 193892085 -88301579 - MLT1J LTR MaLR -105 406 7 2017 147 0 3 chr1 193893021 193893313 -88300351 - AluJb SINE Alu -21 291 1 2347 92 3 6 chr1 193893366 193893680 -88299984 - AluSp SINE Alu 0 313 1 22 0 0 0 chr1 193893701 193893723 -88299941 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 193893731 193893753 -88299911 + AT_rich Low_complexity Low_complexity 1 22 0 369 304 10 20 chr1 193894271 193894373 -88299291 + L2 LINE L2 3209 3309 -4 284 353 142 16 chr1 193894449 193894899 -88298765 - L2 LINE L2 -514 2800 2294 292 364 109 6 chr1 193895051 193895364 -88298300 + L2 LINE L2 2051 2395 -919 1191 223 21 0 chr1 193895364 193895597 -88298067 + MIR SINE MIR 4 241 -21 268 351 75 75 chr1 193895602 193896081 -88297583 + L2 LINE L2 2377 2855 -459 26 64 0 0 chr1 193896968 193897015 -88296649 + AT_rich Low_complexity Low_complexity 1 47 0 3007 44 0 3 chr1 193898381 193898745 -88294919 - L1PA7 LINE L1 -2 6152 5790 393 279 111 12 chr1 193899616 193899788 -88293876 - MER5A DNA MER1_type 0 189 1 1545 153 3 80 chr1 193900158 193900471 -88293193 - AluJb SINE Alu -23 289 1 336 48 0 0 chr1 193901347 193901389 -88292275 + (TG)n Simple_repeat Simple_repeat 1 42 0 436 255 71 36 chr1 193901492 193901696 -88291968 - L1M4 LINE L1 -692 5486 5273 4046 187 47 11 chr1 193901742 193902888 -88290776 - L1MB8 LINE L1 -1 6177 4992 4565 161 8 43 chr1 193902909 193903591 -88290073 - L1PA16 LINE L1 -9 7595 6890 2144 101 40 48 chr1 193903591 193903969 -88289695 - THE1C LTR MaLR 0 375 1 4565 161 8 43 chr1 193903969 193904120 -88289544 - L1PA16 LINE L1 -714 6890 6735 2374 89 0 3 chr1 193904120 193904424 -88289240 - AluSq SINE Alu -10 303 1 4565 161 8 43 chr1 193904424 193904444 -88289220 - L1PA16 LINE L1 -869 6735 6716 2394 94 0 10 chr1 193904444 193904753 -88288911 - AluY SINE Alu -5 306 1 4565 161 8 43 chr1 193904753 193905610 -88288054 - L1PA16 LINE L1 -888 6716 5919 1343 223 39 6 chr1 193905597 193905960 -88287704 - L1MB8 LINE L1 -1141 5005 4631 * 1995 226 50 0 chr1 193905960 193906460 -88287204 + L1M4 LINE L1 3805 4329 -1817 2031 97 0 29 chr1 193906460 193906771 -88286893 - L1PA14 LINE L1 -2 6159 5858 1096 136 11 5 chr1 193906771 193906955 -88286709 + L1PA14 LINE L1 5676 5860 -301 12609 147 50 4 chr1 193906955 193910085 -88283579 - L1PA16 LINE L1 -4896 2685 2 432 222 0 0 chr1 193910087 193910186 -88283478 + L1M4 LINE L1 4320 4418 -1728 321 243 184 0 chr1 193910190 193910293 -88283371 + FLAM_C SINE Alu 6 127 -6 818 218 0 0 chr1 193910302 193910499 -88283165 + L1M4 LINE L1 4412 4608 -1538 208 315 55 14 chr1 193910621 193910694 -88282970 - L2 LINE L2 -47 3266 3191 21 0 0 0 chr1 193910694 193910715 -88282949 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 193911152 193911178 -88282486 + AT_rich Low_complexity Low_complexity 1 26 0 861 158 0 0 chr1 193911200 193911358 -88282306 + CT-rich Low_complexity Low_complexity 3 160 0 1753 169 0 53 chr1 193911358 193911678 -88281986 - AluJo SINE Alu -5 307 5 365 183 344 15 chr1 193912585 193912716 -88280948 - L2 LINE L2 0 3313 3140 285 262 77 71 chr1 193912717 193912931 -88280733 - L2 LINE L2 -302 3011 2791 248 377 57 6 chr1 193913063 193913222 -88280442 - L2 LINE L2 -1780 1534 1368 21 57 0 0 chr1 193913387 193913422 -88280242 + AT_rich Low_complexity Low_complexity 1 35 0 242 255 147 45 chr1 193913441 193913598 -88280066 - L1 LINE L1 -2213 3933 3761 349 264 93 50 chr1 193914065 193914247 -88279417 - MIR SINE MIR -3 259 70 29 0 0 0 chr1 193914373 193914402 -88279262 + AT_rich Low_complexity Low_complexity 1 29 0 1002 203 0 79 chr1 193914836 193915063 -88278601 - MER63A DNA MER1_type 0 210 2 1905 140 40 20 chr1 193915298 193915598 -88278066 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr1 193916011 193916033 -88277631 + AT_rich Low_complexity Low_complexity 1 22 0 609 276 0 65 chr1 193916666 193916788 -88276876 - MER5A DNA MER1_type -2 187 80 1627 163 3 48 chr1 193916788 193917106 -88276558 - AluJb SINE Alu 0 305 1 609 276 0 65 chr1 193917106 193917181 -88276483 - MER5A DNA MER1_type -109 80 2 211 171 0 24 chr1 193917337 193917378 -88276286 + L2 LINE L2 3217 3256 -16 22 0 0 0 chr1 193917711 193917733 -88275931 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 193920227 193920253 -88273411 + AT_rich Low_complexity Low_complexity 1 26 0 201 260 32 81 chr1 193920316 193920439 -88273225 - L2 LINE L2 -8 3305 3189 207 0 0 0 chr1 193921425 193921448 -88272216 + (T)n Simple_repeat Simple_repeat 1 23 0 694 246 206 71 chr1 193921751 193922053 -88271611 - L2 LINE L2 0 3313 2944 1879 164 10 6 chr1 193922053 193922364 -88271300 + AluJb SINE Alu 1 312 0 694 246 206 71 chr1 193922364 193922455 -88271209 - L2 LINE L2 -369 2944 2867 2849 115 46 45 chr1 193922469 193923076 -88270588 + MER4B LTR ERV1 1 778 -1 1538 182 52 15 chr1 193923227 193923551 -88270113 - MER58B DNA MER1_type 0 341 6 1651 172 11 4 chr1 193923563 193923897 -88269767 - AluJb SINE Alu 0 336 1 1824 175 10 29 chr1 193924079 193924393 -88269271 - AluJb SINE Alu -4 308 1 492 362 50 13 chr1 193924968 193925353 -88268311 - L2 LINE L2 -210 3103 2698 388 209 95 34 chr1 193925394 193925588 -88268076 - MER34 LTR ERV1 0 737 385 2312 136 24 64 chr1 193925832 193926282 -88267382 - MSTB1 LTR MaLR 0 432 1 24 53 0 0 chr1 193928354 193928392 -88265272 + AT_rich Low_complexity Low_complexity 1 38 0 1909 192 50 130 chr1 193928558 193928648 -88265016 + L1MB7 LINE L1 5369 5465 -719 1564 206 0 21 chr1 193928648 193928939 -88264725 - AluJo SINE Alu -27 285 1 1909 192 50 130 chr1 193928939 193929460 -88264204 + L1MB7 LINE L1 5465 5892 -292 1633 182 158 3 chr1 193929460 193929822 -88263842 + MER47B DNA MER2_type 1 418 0 1909 192 50 130 chr1 193929822 193930084 -88263580 + L1MB7 LINE L1 5892 6173 -11 351 96 0 0 chr1 193930143 193930195 -88263469 + (TCC)n Simple_repeat Simple_repeat 1 52 0 302 301 49 42 chr1 193930729 193930872 -88262792 + L2 LINE L2 3170 3313 0 4691 167 19 22 chr1 193930949 193931855 -88261809 - MER4D LTR ERV1 0 903 1 2181 125 20 3 chr1 193932641 193932946 -88260718 - AluSx SINE Alu -2 310 1 878 324 101 29 chr1 193933128 193933644 -88260020 - L3 LINE CR1 -403 1174 622 2465 104 34 14 chr1 193934962 193935319 -88258345 - THE1B LTR MaLR 0 364 1 11375 89 18 15 chr1 193935319 193936411 -88257253 - THE1B-int LTR MaLR 0 1580 480 2458 87 0 3 chr1 193936411 193936721 -88256943 - AluY SINE Alu -2 309 1 11375 89 18 15 chr1 193936721 193937203 -88256461 - THE1B-int LTR MaLR -1100 480 1 2421 123 28 14 chr1 193937203 193937562 -88256102 - THE1B LTR MaLR 0 364 1 272 271 0 0 chr1 193937572 193937642 -88256022 + (TG)n Simple_repeat Simple_repeat 1 70 0 314 289 104 40 chr1 193938099 193938272 -88255392 + L1ME2 LINE L1 5768 5951 -213 22 0 0 0 chr1 193938327 193938349 -88255315 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 193938472 193938502 -88255162 + AT_rich Low_complexity Low_complexity 1 30 0 590 295 147 27 chr1 193938697 193939145 -88254519 - L2 LINE L2 -1017 2297 1796 1541 215 87 20 chr1 193939183 193939621 -88254043 + MLT1C LTR MaLR 1 467 0 953 132 0 24 chr1 193939712 193939879 -88253785 + MSTC LTR MaLR 58 220 -208 382 365 99 25 chr1 193939888 193940521 -88253143 - L2 LINE L2 -1665 1649 970 2940 168 41 34 chr1 193940658 193941084 -88252580 + L1MB4 LINE L1 5481 5902 -278 2074 184 21 37 chr1 193941084 193941513 -88252151 - MSTC LTR MaLR -3 425 4 2940 168 41 34 chr1 193941513 193941677 -88251987 + L1MB4 LINE L1 5902 6079 -101 1369 241 71 8 chr1 193941677 193942029 -88251635 - MLT1A2 LTR MaLR 0 374 1 2940 168 41 34 chr1 193942029 193942091 -88251573 + L1MB4 LINE L1 6079 6139 -41 * 4666 137 38 11 chr1 193942069 193942910 -88250754 + L1MC1 LINE L1 5452 6315 -18 183 113 57 0 chr1 193942953 193943006 -88250658 + (TA)n Simple_repeat Simple_repeat 1 56 0 4658 129 78 4 chr1 193943058 193943892 -88249772 + MER4D LTR ERV1 1 896 -7 2380 208 51 111 chr1 193944137 193944484 -88249180 - MER21B LTR ERV1 -58 805 439 1765 171 10 36 chr1 193944484 193944788 -88248876 + AluJo SINE Alu 1 296 -16 2380 208 51 111 chr1 193944788 193945285 -88248379 - MER21B LTR ERV1 -424 439 12 3862 146 32 12 chr1 193945714 193946372 -88247292 - LTR51 LTR ERV1 0 671 1 1808 201 75 73 chr1 193946586 193947279 -88246385 + LTR48 LTR ERV1 1 644 0 1315 138 32 6 chr1 193947508 193947934 -88245730 - LTR54 LTR ERV1 0 510 14 621 149 57 91 chr1 193948263 193948332 -88245332 - MIR SINE MIR -2 260 190 2134 177 199 38 chr1 193948332 193949010 -88244654 - LTR48 LTR ERV1 0 787 1 621 149 57 91 chr1 193949010 193949115 -88244549 - MIR SINE MIR -72 190 92 210 118 0 0 chr1 193949540 193949574 -88244090 + (TTA)n Simple_repeat Simple_repeat 2 35 0 227 179 0 0 chr1 193949575 193949614 -88244050 - MIR SINE MIR -119 143 105 207 0 0 0 chr1 193950931 193950954 -88242710 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 256 323 11 43 chr1 193951469 193951562 -88242102 + MIR3 SINE MIR 91 180 -28 207 328 0 0 chr1 193951726 193951784 -88241880 - L2 LINE L2 -15 3257 3200 2269 105 3 0 chr1 193951791 193952120 -88241544 + AluSp SINE Alu 1 330 0 366 321 9 0 chr1 193952475 193952584 -88241080 + MIR SINE MIR 14 123 -139 336 255 147 57 chr1 193952765 193952896 -88240768 - MIR SINE MIR -80 182 33 1808 155 28 3 chr1 193952896 193953180 -88240484 - AluJb SINE Alu -13 299 9 336 255 147 57 chr1 193953180 193953205 -88240459 - MIR SINE MIR -229 33 12 227 244 0 0 chr1 193954046 193954087 -88239577 + polypyrimidine Low_complexity Low_complexity 2 42 0 1377 181 56 38 chr1 193954092 193954380 -88239284 - AluJo SINE Alu -19 293 1 723 184 7 0 chr1 193954919 193955060 -88238604 + L1M4 LINE L1 4609 4750 -1396 712 183 114 0 chr1 193955072 193955203 -88238461 + FAM SINE Alu 18 163 -22 974 222 29 4 chr1 193955211 193955450 -88238214 + L1M4 LINE L1 4744 4988 -1158 2742 99 0 0 chr1 193955498 193955853 -88237811 - THE1B LTR MaLR -9 355 1 667 281 110 46 chr1 193956842 193957259 -88236405 + L2 LINE L2 1946 2389 -925 1185 288 191 40 chr1 193957290 193958391 -88235273 - L2 LINE L2 0 3313 2031 21 0 0 0 chr1 193958437 193958458 -88235206 + AT_rich Low_complexity Low_complexity 1 21 0 672 87 0 0 chr1 193958563 193958655 -88235009 + L1M1 LINE L1 5644 5735 -569 181 224 35 71 chr1 193959488 193959536 -88234128 - MER5B DNA MER1_type -12 166 121 2493 130 0 2 chr1 193959536 193959935 -88233729 - L1MA5 LINE L1 -3 6297 5900 181 224 35 71 chr1 193959935 193959971 -88233693 - MER5B DNA MER1_type -57 121 85 2167 117 13 0 chr1 193959991 193960290 -88233374 - AluSx SINE Alu -9 303 1 246 32 0 0 chr1 193961876 193961907 -88231757 + (TG)n Simple_repeat Simple_repeat 2 32 0 618 243 169 16 chr1 193962082 193962395 -88231269 + L2 LINE L2 1432 1792 -1522 1373 168 0 13 chr1 193962396 193962622 -88231042 + AluJb SINE Alu 1 223 -89 1499 243 123 101 chr1 193962638 193963157 -88230507 + L2 LINE L2 1899 2405 -908 216 67 0 0 chr1 193963157 193963187 -88230477 + (CATCC)n Simple_repeat Simple_repeat 1 30 0 1499 243 123 101 chr1 193963187 193964034 -88229630 + L2 LINE L2 2405 3313 0 350 293 155 29 chr1 193965166 193965340 -88228324 + L3 LINE CR1 1298 1493 -84 688 115 0 0 chr1 193965857 193965953 -88227711 - AluJb SINE Alu -15 297 202 22 35 0 0 chr1 193966396 193966425 -88227239 + AT_rich Low_complexity Low_complexity 1 29 0 37 62 0 0 chr1 193968527 193968592 -88225072 + AT_rich Low_complexity Low_complexity 1 65 0 1885 266 151 29 chr1 193968977 193970027 -88223637 - HAL1 LINE L1 -1104 1403 226 3873 193 90 11 chr1 193970359 193971102 -88222562 - MER21B LTR ERV1 -61 802 1 6853 204 53 50 chr1 193971936 193974320 -88219344 - L1M4c LINE L1 -4003 2643 180 2158 120 7 7 chr1 193974320 193974628 -88219036 - AluSq SINE Alu -5 308 1 6853 204 53 50 chr1 193974628 193974806 -88218858 - L1M4c LINE L1 -6466 180 4 271 229 0 33 chr1 193974875 193974936 -88218728 + 7SK RNA RNA 4 62 -131 434 287 7 35 chr1 193975815 193975958 -88217706 + MIR SINE MIR 62 200 -62 1976 155 0 10 chr1 193975970 193976266 -88217398 + AluJb SINE Alu 1 293 -19 181 256 64 39 chr1 193977241 193977319 -88216345 - MIR SINE MIR -117 145 66 2182 263 63 24 chr1 193977732 193978793 -88214871 - L2 LINE L2 -1 3312 2210 1357 199 57 60 chr1 193978858 193979274 -88214390 + MLT1C LTR MaLR 37 467 0 650 288 68 23 chr1 193979274 193979538 -88214126 - L2 LINE L2 -1097 2217 1942 1064 262 61 72 chr1 193979904 193980415 -88213249 - L2 LINE L2 -1367 1947 1443 284 237 0 53 chr1 193982746 193982822 -88210842 + C-rich Low_complexity Low_complexity 3 74 0 871 340 79 57 chr1 193982885 193984135 -88209529 - L2 LINE L2 -1808 1506 229 1259 186 17 8 chr1 193984267 193984503 -88209161 + MIR SINE MIR 1 238 -24 2657 203 82 41 chr1 193985928 193986986 -88206678 - L1ME2 LINE L1 -44 6189 5084 741 206 35 0 chr1 193986997 193987138 -88206526 - AluJb SINE Alu -19 293 148 2983 168 12 6 chr1 193987141 193987780 -88205884 - L1M1 LINE L1 -743 5403 4796 639 194 39 58 chr1 193987778 193987984 -88205680 - L1ME2 LINE L1 -1117 5098 4897 * 245 102 72 36 chr1 193988010 193988176 -88205488 + (TATAA)n Simple_repeat Simple_repeat 3 174 0 21 0 0 0 chr1 193988176 193988197 -88205467 + AT_rich Low_complexity Low_complexity 1 21 0 521 66 78 18 chr1 193988243 193988410 -88205254 + (TA)n Simple_repeat Simple_repeat 2 178 0 867 254 105 37 chr1 193988427 193988660 -88205004 - L1ME2 LINE L1 -1319 4896 4625 737 187 42 75 chr1 193988660 193988874 -88204790 - MER3 DNA MER1_type -1 208 2 867 254 105 37 chr1 193988874 193989022 -88204642 - L1ME2 LINE L1 -1590 4625 4489 615 247 21 11 chr1 193989033 193989223 -88204441 - L1ME2 LINE L1 -3470 2745 2554 387 202 10 10 chr1 193989248 193989347 -88204317 - L1ME2 LINE L1 -4097 2299 2201 1071 250 70 57 chr1 193989393 193989905 -88203759 - L1ME2 LINE L1 -4482 1914 1396 369 0 0 0 chr1 193989906 193989947 -88203717 + (TG)n Simple_repeat Simple_repeat 2 42 0 959 289 91 56 chr1 193990008 193990775 -88202889 - L1ME2 LINE L1 -5391 1005 212 239 315 19 19 chr1 193990776 193990884 -88202780 - L1ME2 LINE L1 -6254 142 35 656 261 97 80 chr1 193991397 193991708 -88201956 - MLT1J2 LTR MaLR -114 336 21 221 288 0 17 chr1 193991833 193991892 -88201772 + CT-rich Low_complexity Low_complexity 6 63 0 208 246 116 0 chr1 193991908 193991977 -88201687 - L2 LINE L2 -42 3230 3154 259 363 103 75 chr1 193992636 193993074 -88200590 - L2 LINE L2 0 3272 2823 713 189 50 0 chr1 193993133 193993292 -88200372 - L1MC1 LINE L1 -6 6607 6441 1385 110 14 10 chr1 193993292 193993501 -88200163 + L1PB1 LINE L1 5685 5894 -257 * 6079 196 47 54 chr1 193993499 193995121 -88198543 - L1MC1 LINE L1 -667 5957 4325 2248 104 0 35 chr1 193995121 193995437 -88198227 + AluSx SINE Alu 5 309 -3 6079 196 47 54 chr1 193995437 193996110 -88197554 - L1MC1 LINE L1 -2299 4325 3649 691 148 0 0 chr1 193996110 193996211 -88197453 - FRAM SINE Alu -39 137 37 6079 196 47 54 chr1 193996211 193997678 -88195986 - L1MC1 LINE L1 -2975 3649 2157 406 181 0 0 chr1 193997680 193997752 -88195912 + Tigger5 DNA MER2_type 8 79 -2244 1515 137 175 22 chr1 193997814 193998180 -88195484 - L1MC1 LINE L1 -4264 2162 1741 718 192 6 6 chr1 193998186 193998353 -88195311 + CT-rich Low_complexity Low_complexity 4 170 0 244 189 27 27 chr1 193998367 193998441 -88195223 + CT-rich Low_complexity Low_complexity 3 76 0 6062 162 84 64 chr1 193998469 193999668 -88193996 - L1MC1 LINE L1 -4762 1664 423 2400 56 7 13 chr1 193999668 193999971 -88193693 + AluY SINE Alu 7 307 -4 6062 162 84 64 chr1 193999971 194000373 -88193291 - L1MC1 LINE L1 -6003 423 31 1437 162 100 44 chr1 194000412 194000719 -88192945 + AluJo SINE Alu 1 322 0 273 172 0 17 chr1 194000727 194000785 -88192879 + MER94 DNA DNA 38 94 -40 391 261 11 0 chr1 194000833 194000921 -88192743 - MIR SINE MIR -168 94 6 21 0 0 0 chr1 194001058 194001079 -88192585 + AT_rich Low_complexity Low_complexity 1 21 0 469 256 81 29 chr1 194001303 194001475 -88192189 + MIR SINE MIR 12 192 -70 3077 248 65 51 chr1 194001766 194003365 -88190299 - HAL1 LINE L1 0 2507 887 319 335 41 16 chr1 194003443 194003637 -88190027 + L1M4 LINE L1 3554 3752 -2394 30221 107 11 59 chr1 194003741 194005883 -88187781 + L1PA8 LINE L1 19 2263 -3909 2271 83 4 0 chr1 194005883 194006160 -88187504 - AluY SINE Alu -17 294 17 30221 107 11 59 chr1 194006160 194006526 -88187138 + L1PA8 LINE L1 2263 2645 -3527 2050 117 7 0 chr1 194006526 194006809 -88186855 + AluSg SINE Alu 1 285 -25 297 0 0 0 chr1 194006809 194006842 -88186822 + (CA)n Simple_repeat Simple_repeat 2 34 0 30221 107 11 59 chr1 194006842 194010796 -88182868 + L1PA8 LINE L1 2643 6163 -9 399 292 208 14 chr1 194010917 194011061 -88182603 - MIR3 SINE MIR -27 181 10 261 0 0 0 chr1 194011750 194011779 -88181885 + (T)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr1 194012551 194012582 -88181082 + AT_rich Low_complexity Low_complexity 1 31 0 1022 340 129 20 chr1 194013974 194014818 -88178846 - L2 LINE L2 -387 2927 1992 3127 32 0 0 chr1 194015231 194015600 -88178064 - L1PA3 LINE L1 -3 6152 5784 5326 23 10 0 chr1 194015600 194016647 -88177017 + L1PA3 LINE L1 4723 5775 -380 210 337 87 0 chr1 194016875 194016967 -88176697 - L2 LINE L2 -960 2354 2255 24 0 0 0 chr1 194018612 194018636 -88175028 + AT_rich Low_complexity Low_complexity 1 24 0 258 257 27 0 chr1 194018952 194019026 -88174638 + CT-rich Low_complexity Low_complexity 4 79 0 180 0 0 0 chr1 194019717 194019737 -88173927 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 528 322 121 59 chr1 194019756 194020820 -88172844 - L2 LINE L2 0 3272 2153 21 36 0 0 chr1 194021010 194021038 -88172626 + AT_rich Low_complexity Low_complexity 1 28 0 580 285 237 22 chr1 194021610 194022176 -88171488 - L2 LINE L2 -4 3309 2627 658 251 42 0 chr1 194022182 194022350 -88171314 - MER69A DNA AcHobo 0 177 3 398 292 79 33 chr1 194022364 194022604 -88171060 - L2 LINE L2 -756 2558 2308 1725 183 25 19 chr1 194024465 194024826 -88168838 - MLT1A1 LTR MaLR -2 363 1 5313 32 0 0 chr1 194025171 194025792 -88167872 + L1PA3 LINE L1 5535 6155 0 677 222 105 77 chr1 194028403 194028651 -88165013 + MIR SINE MIR 2 256 -6 583 199 20 27 chr1 194029655 194029801 -88163863 - L1MEc LINE L1 -6216 180 36 2040 150 57 100 chr1 194029816 194030528 -88163136 - LTR49-int LTR ERV1 -906 5425 4880 441 184 31 0 chr1 194030629 194030727 -88162937 - L1MDa LINE L1 -4269 2157 2057 782 210 74 21 chr1 194030751 194031044 -88162620 - L1MDa LINE L1 -4434 1992 1706 216 0 0 0 chr1 194031049 194031073 -88162591 + (TA)n Simple_repeat Simple_repeat 1 24 0 2197 117 0 0 chr1 194031073 194031365 -88162299 - AluSx SINE Alu -16 296 5 1148 111 0 6 chr1 194031444 194031625 -88162039 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2038 123 0 0 chr1 194031626 194031902 -88161762 - AluSx SINE Alu -34 278 3 417 112 56 0 chr1 194031911 194032000 -88161664 + CT-rich Low_complexity Low_complexity 2 95 0 946 157 0 57 chr1 194032004 194032163 -88161501 - FRAM SINE Alu -26 150 1 383 225 0 11 chr1 194032163 194032252 -88161412 - L1MDa LINE L1 -4860 1566 1479 261 125 22 0 chr1 194032636 194032696 -88160968 + L1MA8 LINE L1 6234 6285 -6 319 304 18 0 chr1 194033687 194033855 -88159809 + LTR37B LTR ERV1 266 436 -32 2331 95 3 3 chr1 194033856 194034160 -88159504 - AluSp SINE Alu -9 304 1 2460 92 0 0 chr1 194034292 194034596 -88159068 - AluSx SINE Alu -8 304 1 232 254 16 16 chr1 194034748 194034811 -88158853 + CT-rich Low_complexity Low_complexity 1 63 0 222 239 42 14 chr1 194034833 194034904 -88158760 - MIR SINE MIR -1 261 189 373 235 24 0 chr1 194035027 194035112 -88158552 + MER20 DNA MER1_type 1 87 -132 778 129 24 8 chr1 194035257 194035381 -88158283 - FLAM_C SINE Alu -6 137 12 2001 151 26 0 chr1 194035389 194035693 -88157971 - AluSx SINE Alu 0 312 1 1168 138 0 33 chr1 194035695 194035876 -88157788 - FRAM SINE Alu -9 167 1 293 219 56 69 chr1 194036076 194036236 -88157428 - L1MC5 LINE L1 -55 7906 7749 1826 157 0 7 chr1 194036266 194036553 -88157111 - AluSq SINE Alu -26 287 3 191 274 14 68 chr1 194086773 194086846 -88106818 - L2 LINE L2 -1391 1923 1855 23 54 0 0 chr1 194087183 194087220 -88106444 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr1 194087827 194087857 -88105807 + AT_rich Low_complexity Low_complexity 1 30 0 1878 135 4 4 chr1 194088740 194089062 -88104602 - AluY SINE Alu 0 322 1 254 28 0 28 chr1 194089111 194089147 -88104517 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1221 183 59 3 chr1 194089801 194090091 -88103573 - MER33 DNA MER1_type -3 321 16 271 384 5 38 chr1 194090106 194090291 -88103373 + L2 LINE L2 2467 2645 -669 303 275 35 35 chr1 194090291 194090433 -88103231 + Charlie7 DNA MER1_type 31 172 -2440 384 390 12 0 chr1 194090635 194090799 -88102865 - MER5A DNA MER1_type -9 180 15 2241 128 22 27 chr1 194090799 194091165 -88102499 - THE1B LTR MaLR 0 364 1 215 171 183 61 chr1 194094100 194094182 -88099482 - MIR SINE MIR -51 211 120 524 258 61 0 chr1 194094224 194094356 -88099308 - MIR SINE MIR -109 153 14 690 246 177 66 chr1 194094949 194095539 -88098125 - L2 LINE L2 -141 3172 2536 241 200 147 13 chr1 194095811 194095886 -88097778 - MIR SINE MIR -116 146 62 522 280 55 78 chr1 194095911 194096218 -88097446 - L2 LINE L2 -11 3302 3003 396 332 49 49 chr1 194096253 194096539 -88097125 - L2 LINE L2 -518 2796 2511 275 231 144 29 chr1 194096566 194096674 -88096990 + L2 LINE L2 3189 3308 -5 232 24 24 48 chr1 194096843 194096885 -88096779 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr1 194099706 194099730 -88093934 + (A)n Simple_repeat Simple_repeat 1 24 0 609 193 0 0 chr1 194106655 194106795 -88086869 + CT-rich Low_complexity Low_complexity 1 140 0 239 287 89 20 chr1 194108464 194108565 -88085099 - L2 LINE L2 -9 3263 3156 441 273 16 16 chr1 194109290 194109411 -88084253 - MIR SINE MIR -60 202 82 336 262 111 16 chr1 194111877 194112003 -88081661 - MIR SINE MIR -18 244 107 437 237 35 18 chr1 194112017 194112131 -88081533 + MIR SINE MIR 30 145 -117 251 175 0 16 chr1 194112403 194112466 -88081198 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 180 0 0 0 chr1 194113237 194113257 -88080407 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1544 151 4 33 chr1 194113260 194113532 -88080132 - AluJo SINE Alu -42 270 7 21 0 0 0 chr1 194113904 194113925 -88079739 + AT_rich Low_complexity Low_complexity 1 21 0 265 211 56 0 chr1 194114499 194114570 -88079094 + MIR SINE MIR 113 187 -75 253 343 128 0 chr1 194117014 194117116 -88076548 - L2 LINE L2 -1 3271 3157 670 296 45 12 chr1 194117267 194117514 -88076150 + MIR SINE MIR 2 256 -6 358 264 100 0 chr1 194118199 194118309 -88075355 + MIR SINE MIR 51 171 -91 2826 126 57 0 chr1 194118317 194118784 -88074880 - MER1A DNA MER1_type -7 522 1 256 208 19 0 chr1 194118785 194118838 -88074826 + MIR SINE MIR 165 218 -44 1932 140 29 46 chr1 194118892 194119242 -88074422 - MER2 DNA MER2_type 0 344 1 790 261 325 0 chr1 194119265 194119641 -88074023 - L2 LINE L2 -1 3312 2815 6662 139 40 18 chr1 194121140 194122341 -88071323 - Tigger3b DNA MER2_type 0 1231 4 40 21 0 0 chr1 194122531 194122578 -88071086 + AT_rich Low_complexity Low_complexity 1 47 0 206 348 78 58 chr1 194122919 194123301 -88070363 + L3b LINE CR1 1102 1491 -92 25 0 0 0 chr1 194124011 194124036 -88069628 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr1 194124052 194124101 -88069563 + AT_rich Low_complexity Low_complexity 1 49 0 2850 129 20 45 chr1 194124368 194124587 -88069077 - L1MA9 LINE L1 0 6312 6089 2161 121 7 0 chr1 194124587 194124892 -88068772 - AluY SINE Alu -4 307 1 2850 129 20 45 chr1 194124892 194125223 -88068441 - L1MA9 LINE L1 -223 6089 5776 228 231 0 0 chr1 194125239 194125291 -88068373 + L1MC4 LINE L1 6652 6703 -1339 312 137 0 0 chr1 194125291 194125342 -88068322 + (CA)n Simple_repeat Simple_repeat 2 52 0 493 90 142 12 chr1 194125345 194125440 -88068224 - L1P4 LINE L1 -383 5780 5672 240 213 0 0 chr1 194125541 194125602 -88068062 + T-rich Low_complexity Low_complexity 1 61 0 367 183 73 0 chr1 194126535 194126617 -88067047 + L1MD3 LINE L1 7904 7991 -4 284 175 17 133 chr1 194126618 194126738 -88066926 + Charlie8 DNA MER1_type 379 484 -1933 188 349 72 43 chr1 194126764 194126973 -88066691 + L2 LINE L2 2717 2931 -383 25 0 0 0 chr1 194127110 194127135 -88066529 + AT_rich Low_complexity Low_complexity 1 25 0 285 281 0 0 chr1 194127250 194127314 -88066350 - L2 LINE L2 -8 3264 3201 328 285 64 121 chr1 194127331 194127580 -88066084 + L2 LINE L2 3032 3266 -6 200 322 44 0 chr1 194127937 194128027 -88065637 + L2 LINE L2 3216 3309 -4 5930 45 3 0 chr1 194128277 194129005 -88064659 - L1PA5 LINE L1 -1 6153 5424 422 262 54 53 chr1 194131545 194131717 -88061947 - MIR SINE MIR -55 207 38 367 244 244 37 chr1 194131727 194131944 -88061720 + MIR SINE MIR 1 262 0 570 202 0 10 chr1 194133613 194133717 -88059947 - Tigger7 DNA MER2_type 0 2491 2389 * 1423 188 47 4 chr1 194133712 194133967 -88059697 - Tigger7 DNA MER2_type -2220 267 2 712 331 77 33 chr1 194134364 194134844 -88058820 - L2 LINE L2 -555 2759 2259 581 169 17 68 chr1 194134845 194134963 -88058701 - FLAM_C SINE Alu -11 132 21 278 271 9 75 chr1 194137277 194137332 -88056332 + MLT1F1 LTR MaLR 49 95 -447 2052 196 69 49 chr1 194137332 194137826 -88055838 + MLT1D LTR MaLR 1 504 -1 278 271 9 75 chr1 194137826 194137877 -88055787 + MLT1F1 LTR MaLR 95 148 -394 * 1103 222 75 0 chr1 194137846 194138085 -88055579 + MLT1F1 LTR MaLR 308 564 -3 1937 156 3 12 chr1 194138519 194138852 -88054812 + MER44D DNA MER2_type 1 600 -9 1657 201 23 12 chr1 194139269 194139613 -88054051 - MER7A DNA MER2_type 0 346 1 245 312 39 0 chr1 194139727 194139804 -88053860 - L2 LINE L2 0 3313 3234 231 222 0 0 chr1 194139958 194140039 -88053625 + GA-rich Low_complexity Low_complexity 2 82 0 211 362 47 27 chr1 194140056 194140205 -88053459 - L2 LINE L2 -1333 1981 1830 360 255 119 49 chr1 194141088 194141274 -88052390 - MIR SINE MIR -4 258 51 226 270 21 76 chr1 194141606 194141772 -88051892 - MIR SINE MIR -18 244 93 351 0 0 0 chr1 194142730 194142769 -88050895 + (CA)n Simple_repeat Simple_repeat 2 40 0 1729 141 29 61 chr1 194144950 194145262 -88048402 - AluJb SINE Alu -10 302 1 30 59 0 0 chr1 194148638 194148689 -88044975 + AT_rich Low_complexity Low_complexity 1 51 0 254 325 36 0 chr1 194149552 194149635 -88044029 - MIR SINE MIR -111 151 66 370 259 0 2 chr1 194149642 194149731 -88043933 - FRAM/FAM SINE Alu -92 74 2 370 233 14 0 chr1 194149749 194149822 -88043842 - tRNA-Glu-GAG tRNA tRNA 0 75 2 1830 184 6 14 chr1 194149865 194150223 -88043441 - L1MC/D LINE L1 -1963 5822 5468 * 2516 245 23 13 chr1 194150206 194150982 -88042682 - L1MC/D LINE L1 -981 5165 4382 2253 170 21 11 chr1 194150984 194151366 -88042298 - MSTB LTR MaLR 0 426 41 12347 56 14 0 chr1 194151366 194153727 -88039937 - L1PA5 LINE L1 0 6154 3775 7172 24 0 0 chr1 194153730 194154562 -88039102 - L1PA3 LINE L1 0 6155 5324 14641 62 1 1 chr1 194154576 194156494 -88037170 - L1PA5 LINE L1 -2356 3790 1873 386 93 0 0 chr1 194156494 194156548 -88037116 - MSTB LTR MaLR -372 54 1 2720 226 21 8 chr1 194156548 194157260 -88036404 - L1MC/D LINE L1 -1762 4384 3664 18998 158 14 5 chr1 194157262 194163320 -88030344 - L1PA14 LINE L1 -5 7594 1479 1462 128 9 9 chr1 194163321 194163540 -88030124 - L1PA14 LINE L1 -7353 228 10 1044 250 15 0 chr1 194163540 194163812 -88029852 - L1MC/D LINE L1 -2470 3676 3401 623 233 80 64 chr1 194166267 194166516 -88027148 - MER112 DNA MER1_type 0 256 4 5886 187 41 34 chr1 194166705 194168147 -88025517 - Charlie1a DNA MER1_type -3 1452 1 191 229 0 0 chr1 194168830 194168865 -88024799 - MIR SINE MIR -10 252 218 1935 175 89 3 chr1 194169658 194170029 -88023635 + MLT2D LTR ERVL 1 403 -11 2099 153 7 58 chr1 194170350 194170761 -88022903 + MLT1B LTR MaLR 1 390 0 34 24 0 0 chr1 194171198 194171239 -88022425 + AT_rich Low_complexity Low_complexity 1 41 0 470 294 15 117 chr1 194171342 194171607 -88022057 - MIR SINE MIR -5 257 20 216 0 0 0 chr1 194171669 194171693 -88021971 + (T)n Simple_repeat Simple_repeat 1 24 0 582 258 10 57 chr1 194174253 194174447 -88019217 - MIR3 SINE MIR -9 199 15 470 197 26 26 chr1 194174698 194174815 -88018849 + L1ME3A LINE L1 6004 6120 -50 189 0 0 0 chr1 194174872 194174893 -88018771 + (A)n Simple_repeat Simple_repeat 1 21 0 1831 154 7 3 chr1 194174903 194175195 -88018469 + AluSg SINE Alu 1 293 -17 1226 14 0 14 chr1 194175664 194175812 -88017852 + L1PA5 LINE L1 6009 6154 0 191 128 51 0 chr1 194175823 194175862 -88017802 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 253 222 0 0 chr1 194177315 194177378 -88016286 + A-rich Low_complexity Low_complexity 1 63 0 291 54 0 0 chr1 194178095 194178132 -88015532 + (CA)n Simple_repeat Simple_repeat 2 38 0 540 218 56 6 chr1 194179827 194180045 -88013619 + MER46C DNA MER2_type 71 338 0 295 314 100 18 chr1 194180092 194180321 -88013343 + HAL1 LINE L1 2245 2492 -15 24 0 0 0 chr1 194180331 194180355 -88013309 + AT_rich Low_complexity Low_complexity 1 24 0 1744 156 0 75 chr1 194180427 194180760 -88012904 + AluJo SINE Alu 3 310 -2 433 322 25 0 chr1 194182632 194182753 -88010911 + MIR3 SINE MIR 31 154 -54 597 263 67 128 chr1 194182944 194183320 -88010344 + L2 LINE L2 2940 3292 -21 207 256 26 64 chr1 194183696 194183774 -88009890 - MER5A DNA MER1_type -6 183 109 1808 129 48 3 chr1 194184297 194184607 -88009057 - L1MA6 LINE L1 0 6300 5977 225 94 0 0 chr1 194184611 194184643 -88009021 + (T)n Simple_repeat Simple_repeat 1 32 0 334 300 78 38 chr1 194184884 194185191 -88008473 + L2 LINE L2 2296 2683 -631 346 244 193 25 chr1 194186312 194186431 -88007233 - MIR3 SINE MIR -48 160 22 2334 87 13 0 chr1 194186489 194186789 -88006875 - AluSc SINE Alu -5 304 1 537 178 20 0 chr1 194187024 194187125 -88006539 + AluJb SINE Alu 199 301 -11 25 65 0 0 chr1 194187194 194187240 -88006424 + AT_rich Low_complexity Low_complexity 1 46 0 401 322 90 0 chr1 194187324 194187535 -88006129 - L1MC/D LINE L1 -1985 5823 5594 558 249 230 9 chr1 194187857 194188070 -88005594 + MIR SINE MIR 3 262 0 320 231 147 51 chr1 194188073 194188229 -88005435 - L1MC/D LINE L1 -2024 5784 5614 5115 104 36 19 chr1 194188264 194188626 -88005038 - L1PB3 LINE L1 0 6154 5800 306 0 0 0 chr1 194188626 194188660 -88005004 + (TA)n Simple_repeat Simple_repeat 2 35 0 5115 104 36 19 chr1 194188660 194189094 -88004570 - L1PB3 LINE L1 -354 5800 5344 303 281 139 31 chr1 194189136 194189424 -88004240 - L1MC/D LINE L1 -2235 5573 5255 362 309 102 68 chr1 194189659 194190176 -88003488 - L1MC/D LINE L1 -1205 4941 4407 25 0 0 0 chr1 194190246 194190271 -88003393 + AT_rich Low_complexity Low_complexity 1 25 0 197 132 26 0 chr1 194191091 194191129 -88002535 + (CA)n Simple_repeat Simple_repeat 2 40 0 661 258 163 91 chr1 194192029 194192478 -88001186 + L2 LINE L2 1812 2292 -1022 553 43 0 0 chr1 194192479 194192548 -88001116 - L1PA4 LINE L1 -5402 744 676 * 6427 64 22 0 chr1 194192545 194193388 -88000276 + L1PA4 LINE L1 716 1577 -4569 * 26008 35 13 0 chr1 194193386 194197349 -87996315 + L1PA4 LINE L1 2130 6141 -14 252 256 22 56 chr1 194197351 194197441 -87996223 - MER58 DNA MER1_type -124 91 5 234 221 116 32 chr1 194197540 194197635 -87996029 + L2 LINE L2 2621 2723 -591 237 200 47 12 chr1 194197942 194198027 -87995637 + GA-rich Low_complexity Low_complexity 3 90 0 349 243 86 36 chr1 194198637 194198777 -87994887 - MIR SINE MIR -96 166 20 211 243 225 9 chr1 194200790 194200901 -87992763 - MIR SINE MIR -77 185 51 1693 91 45 0 chr1 194205777 194205997 -87987667 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr1 194206630 194206651 -87987013 + AT_rich Low_complexity Low_complexity 1 21 0 233 289 156 11 chr1 194207194 194207284 -87986380 + L2 LINE L2 3168 3270 -2 297 131 0 0 chr1 194208464 194208525 -87985139 + (TG)n Simple_repeat Simple_repeat 2 62 0 230 284 0 0 chr1 194211157 194211224 -87982440 + (TG)n Simple_repeat Simple_repeat 2 68 0 1421 57 0 0 chr1 194214935 194215111 -87978553 - L1PA7 LINE L1 -210 5944 5769 37095 35 3 0 chr1 194215121 194220325 -87973339 - L1PA3 LINE L1 0 6155 938 1943 110 8 0 chr1 194220426 194220681 -87972983 - AluSc SINE Alu -52 257 1 23 33 0 0 chr1 194220943 194220973 -87972691 + AT_rich Low_complexity Low_complexity 1 30 0 454 85 0 0 chr1 194223743 194223802 -87969862 - Charlie1 DNA MER1_type -26 2735 2677 601 213 39 0 chr1 194223840 194223967 -87969697 - MER63 DNA MER1_type -302 760 3 10317 181 82 50 chr1 194223972 194226552 -87967112 - Charlie1 DNA MER1_type -98 2663 1 212 270 40 0 chr1 194227363 194227437 -87966227 - MER5C DNA MER1_type 0 324 248 358 222 0 12 chr1 194227576 194227657 -87966007 - MER5C DNA MER1_type -200 124 45 306 253 34 185 chr1 194228552 194228817 -87964847 + L3 LINE CR1 1261 1485 -92 391 190 129 35 chr1 194228817 194228933 -87964731 + MER94 DNA DNA 1 127 -7 261 254 28 28 chr1 194228938 194229009 -87964655 + L3 LINE CR1 1475 1545 -32 198 0 0 0 chr1 194229228 194229250 -87964414 + (TG)n Simple_repeat Simple_repeat 1 22 0 12430 53 14 6 chr1 194229398 194231665 -87961999 + L1PA6 LINE L1 3872 6152 -2 309 235 61 43 chr1 194231689 194231804 -87961860 + L1ME4a LINE L1 6005 6121 0 21 0 0 0 chr1 194232160 194232181 -87961483 + AT_rich Low_complexity Low_complexity 1 21 0 1043 271 118 37 chr1 194233925 194234534 -87959130 - L2 LINE L2 0 3313 2665 614 294 57 9 chr1 194234534 194234762 -87958902 + MIR SINE MIR 3 241 -21 23 33 0 0 chr1 194234772 194234802 -87958862 + AT_rich Low_complexity Low_complexity 1 30 0 297 0 0 0 chr1 194234945 194234978 -87958686 + (TG)n Simple_repeat Simple_repeat 2 34 0 838 162 72 36 chr1 194235080 194235247 -87958417 + AluJb SINE Alu 127 299 -13 242 273 0 0 chr1 194236275 194236330 -87957334 + CT-rich Low_complexity Low_complexity 2 56 0 340 288 104 0 chr1 194237211 194237336 -87956328 + MIR SINE MIR 54 191 -71 318 50 0 0 chr1 194237402 194237442 -87956222 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1655 48 0 0 chr1 194237442 194237629 -87956035 - L1PA7 LINE L1 -11 6143 5957 2041 60 16 0 chr1 194237629 194237881 -87955783 + L1P3 LINE L1 5530 5785 -369 5266 59 0 1 chr1 194237881 194238542 -87955122 + L1P LINE L1 1 660 -5486 21 0 0 0 chr1 194239666 194239687 -87953977 + AT_rich Low_complexity Low_complexity 1 21 0 324 70 0 0 chr1 194240082 194240125 -87953539 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 320 21 77 chr1 194240560 194240754 -87952910 - LTR67 LTR ERVL -266 291 109 728 275 73 91 chr1 194240996 194241304 -87952360 - HAL1 LINE L1 -1835 672 360 1568 190 14 14 chr1 194241304 194241593 -87952071 - AluJo SINE Alu -23 289 1 728 275 73 91 chr1 194241593 194241968 -87951696 - HAL1 LINE L1 -2147 360 1 227 314 67 0 chr1 194242247 194242352 -87951312 - L2 LINE L2 -189 3083 2972 4413 17 0 0 chr1 194242716 194243189 -87950475 - L1PA2 LINE L1 -1 6154 5682 3762 19 0 0 chr1 194243190 194243744 -87949920 + L1PA2 LINE L1 5127 5680 -475 2139 158 124 16 chr1 194244702 194245088 -87948576 - MSTA LTR MaLR 0 428 1 2246 92 11 0 chr1 194246500 194246834 -87946830 - AluSq SINE Alu 0 337 1 190 197 45 76 chr1 194247272 194247338 -87946326 - L2 LINE L2 -87 3226 3163 22 0 0 0 chr1 194248779 194248801 -87944863 + AT_rich Low_complexity Low_complexity 1 22 0 1353 194 62 3 chr1 194249696 194250000 -87943664 - MER33 DNA MER1_type -1 323 2 1357 196 71 14 chr1 194251338 194251618 -87942046 - AluJo SINE Alu -14 298 3 316 350 32 8 chr1 194251919 194252042 -87941622 - MIR3 SINE MIR -69 139 14 1472 291 98 31 chr1 194253136 194254411 -87939253 - L1MEd LINE L1 -2002 4127 2768 389 259 24 0 chr1 194254575 194254660 -87939004 - L2 LINE L2 -7 3306 3220 357 270 112 28 chr1 194254789 194254967 -87938697 - L1MEd LINE L1 -3646 2483 2291 4658 133 31 6 chr1 194254968 194255272 -87938392 - L1MA4A LINE L1 -5 6298 6003 438 75 0 0 chr1 194255272 194255339 -87938325 + (CA)n Simple_repeat Simple_repeat 2 68 0 4658 133 31 6 chr1 194255339 194255819 -87937845 - L1MA4A LINE L1 -300 6003 5495 10638 188 61 93 chr1 194255820 194258360 -87935304 - L1 LINE L1 -2655 4193 1694 726 224 54 0 chr1 194258360 194258507 -87935157 - FRAM SINE Alu -23 153 1 10638 188 61 93 chr1 194258507 194260149 -87933515 - L1 LINE L1 -5154 1694 1 325 322 26 0 chr1 194260160 194260275 -87933389 - L1MEd LINE L1 -5685 434 317 2687 87 28 3 chr1 194260844 194261199 -87932465 - THE1B LTR MaLR 0 364 1 414 353 13 6 chr1 194262125 194262281 -87931383 - MIR3 SINE MIR -34 174 18 395 208 57 28 chr1 194264553 194264659 -87929005 + L2 LINE L2 3183 3291 -22 2426 86 0 0 chr1 194265103 194265406 -87928258 - AluY SINE Alu -8 303 1 1370 283 148 19 chr1 194266141 194267106 -87926558 + L2 LINE L2 2213 3313 0 267 31 0 0 chr1 194267706 194267738 -87925926 + (TG)n Simple_repeat Simple_repeat 1 32 0 758 152 7 13 chr1 194268425 194268576 -87925088 + L1MA4 LINE L1 6151 6300 0 477 301 83 37 chr1 194268957 194269173 -87924491 - MIR SINE MIR -34 228 3 184 278 178 33 chr1 194269719 194269809 -87923855 - L3b LINE CR1 -192 1391 1289 2249 113 0 3 chr1 194270118 194270428 -87923236 + AluSc SINE Alu 1 309 0 465 250 50 25 chr1 194271108 194271228 -87922436 + L2 LINE L2 3191 3313 0 219 36 0 0 chr1 194272702 194272730 -87920934 + (TA)n Simple_repeat Simple_repeat 1 28 0 187 200 0 20 chr1 194273270 194273320 -87920344 + L2 LINE L2 2264 2312 -1002 27 62 0 0 chr1 194274157 194274205 -87919459 + AT_rich Low_complexity Low_complexity 1 48 0 33 0 0 0 chr1 194274409 194274442 -87919222 + AT_rich Low_complexity Low_complexity 1 33 0 237 65 0 0 chr1 194274442 194274473 -87919191 + (CA)n Simple_repeat Simple_repeat 2 32 0 766 199 33 7 chr1 194274477 194274628 -87919036 - FRAM SINE Alu -24 152 1 623 321 219 16 chr1 194274746 194275461 -87918203 - L2 LINE L2 -81 3191 2337 308 277 27 18 chr1 194275749 194275861 -87917803 - MER103 DNA DNA -2 164 52 23 0 0 0 chr1 194276609 194276632 -87917032 + AT_rich Low_complexity Low_complexity 1 23 0 739 276 170 26 chr1 194276745 194277248 -87916416 - L2 LINE L2 -6 3307 2720 1659 311 94 59 chr1 194277326 194278488 -87915176 - L2 LINE L2 -996 2318 1117 555 322 46 15 chr1 194278486 194278747 -87914917 + L3 LINE CR1 647 915 -662 * 391 312 69 26 chr1 194278791 194278980 -87914684 - MIR SINE MIR -14 248 52 428 335 61 17 chr1 194279022 194279252 -87914412 + L3 LINE CR1 990 1229 -348 350 79 270 0 chr1 194279303 194279366 -87914298 + MADE1 DNA Mariner 1 80 0 426 285 23 17 chr1 194279678 194279850 -87913814 + L1ME LINE L1 5554 5726 -395 494 299 51 0 chr1 194281111 194281248 -87912416 + MIR SINE MIR 49 192 -70 1959 162 0 0 chr1 194281279 194281587 -87912077 + AluJb SINE Alu 1 308 -4 209 135 27 0 chr1 194282178 194282215 -87911449 + (TA)n Simple_repeat Simple_repeat 1 38 0 307 281 33 62 chr1 194282343 194282553 -87911111 + L1MEc LINE L1 2215 2418 -3978 303 253 48 0 chr1 194282769 194282852 -87910812 - L2 LINE L2 0 3313 3227 867 327 17 33 chr1 194282881 194283300 -87910364 - L1M3a LINE L1 -5543 412 1 2088 130 0 0 chr1 194283517 194283816 -87909848 + AluSx SINE Alu 1 299 -13 493 315 139 39 chr1 194283862 194284395 -87909269 - L1 LINE L1 -2692 3454 2869 437 301 91 62 chr1 194284433 194284839 -87908825 - HAL1 LINE L1 -1109 1398 981 193 372 0 26 chr1 194285362 194285440 -87908224 - L2 LINE L2 -63 3209 3134 512 93 28 28 chr1 194285465 194285572 -87908092 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 375 297 83 46 chr1 194285656 194285990 -87907674 - L2 LINE L2 -188 3084 2736 5892 135 6 4 chr1 194286063 194287157 -87906507 - L1PA16 LINE L1 -37 6129 5034 1187 157 0 0 chr1 194287161 194287359 -87906305 + L1PA16 LINE L1 4840 5037 -1109 202 173 0 96 chr1 194287391 194287443 -87906221 - L2 LINE L2 -673 2641 2595 239 300 170 14 chr1 194287546 194287769 -87905895 - L2 LINE L2 -904 2410 2153 780 266 52 38 chr1 194287778 194287869 -87905795 + L1ME4a LINE L1 5523 5611 -510 1944 164 0 0 chr1 194287869 194288174 -87905490 + AluJo SINE Alu 1 305 -7 780 266 52 38 chr1 194288174 194288450 -87905214 + L1ME4a LINE L1 5611 5895 -226 25341 99 14 18 chr1 194288563 194292345 -87901319 + L1P LINE L1 11 3777 -2369 230 320 0 26 chr1 194342427 194342505 -87851159 - L2 LINE L2 -2 3311 3236 21 0 0 0 chr1 194343060 194343081 -87850583 + AT_rich Low_complexity Low_complexity 1 21 0 1512 92 60 0 chr1 194343714 194343931 -87849733 + MER30 DNA MER1_type 1 230 0 1386 282 148 19 chr1 194344894 194345859 -87847805 + L2 LINE L2 2213 3313 0 267 31 0 0 chr1 194346459 194346491 -87847173 + (TG)n Simple_repeat Simple_repeat 1 32 0 758 152 7 13 chr1 194347178 194347329 -87846335 + L1MA4 LINE L1 6151 6300 0 486 301 83 37 chr1 194347710 194347926 -87845738 - MIR SINE MIR -34 228 3 2291 104 0 3 chr1 194348871 194349179 -87844485 + AluSc SINE Alu 1 307 -2 465 250 50 25 chr1 194349862 194349982 -87843682 + L2 LINE L2 3191 3313 0 23 0 0 0 chr1 194351455 194351478 -87842186 + AT_rich Low_complexity Low_complexity 1 23 0 187 200 0 20 chr1 194352018 194352068 -87841596 + L2 LINE L2 2264 2312 -1002 27 62 0 0 chr1 194352905 194352953 -87840711 + AT_rich Low_complexity Low_complexity 1 48 0 33 0 0 0 chr1 194353157 194353190 -87840474 + AT_rich Low_complexity Low_complexity 1 33 0 255 61 0 0 chr1 194353190 194353223 -87840441 + (CA)n Simple_repeat Simple_repeat 2 34 0 766 199 33 7 chr1 194353227 194353378 -87840286 - FRAM SINE Alu -24 152 1 623 321 219 16 chr1 194353496 194354211 -87839453 - L2 LINE L2 -81 3191 2337 308 277 27 18 chr1 194354499 194354611 -87839053 - MER103 DNA DNA -2 164 52 23 0 0 0 chr1 194355355 194355378 -87838286 + AT_rich Low_complexity Low_complexity 1 23 0 739 276 170 26 chr1 194355491 194355994 -87837670 - L2 LINE L2 -6 3307 2720 1771 306 96 57 chr1 194356072 194357229 -87836435 - L2 LINE L2 -996 2318 1117 555 322 46 15 chr1 194357227 194357488 -87836176 + L3 LINE CR1 647 915 -662 * 360 287 79 30 chr1 194357557 194357721 -87835943 - MIR SINE MIR -39 223 52 428 335 61 17 chr1 194357763 194357993 -87835671 + L3 LINE CR1 990 1229 -348 207 0 0 0 chr1 194357993 194358016 -87835648 + (CA)n Simple_repeat Simple_repeat 1 23 0 350 79 270 0 chr1 194358046 194358109 -87835555 - MADE1 DNA Mariner 0 80 1 426 285 23 17 chr1 194358421 194358593 -87835071 + L1ME LINE L1 5554 5726 -395 180 323 43 32 chr1 194358609 194358702 -87834962 + L3 LINE CR1 1252 1345 -232 494 299 51 0 chr1 194359854 194359991 -87833673 + MIR SINE MIR 49 192 -70 1829 176 3 0 chr1 194360022 194360329 -87833335 + AluJb SINE Alu 1 308 -4 303 253 48 0 chr1 194361504 194361587 -87832077 - L2 LINE L2 0 3313 3227 867 327 17 33 chr1 194361616 194362035 -87831629 - L1M3a LINE L1 -5543 412 1 2136 123 0 0 chr1 194362252 194362552 -87831112 + AluSx SINE Alu 1 300 -12 382 333 72 41 chr1 194362598 194362943 -87830721 - L1 LINE L1 -2692 3454 3099 469 298 91 62 chr1 194363169 194363575 -87830089 - HAL1 LINE L1 -1109 1398 981 193 372 0 26 chr1 194364098 194364176 -87829488 - L2 LINE L2 -63 3209 3134 483 142 9 26 chr1 194364201 194364314 -87829350 + GA-rich Low_complexity Low_complexity 2 112 0 385 302 89 46 chr1 194364398 194364732 -87828932 - L2 LINE L2 -188 3084 2736 5909 135 6 4 chr1 194364805 194365899 -87827765 - L1PA16 LINE L1 -37 6129 5034 1187 157 0 0 chr1 194365903 194366101 -87827563 + L1PA16 LINE L1 4840 5037 -1109 202 173 0 96 chr1 194366133 194366185 -87827479 - L2 LINE L2 -673 2641 2595 244 309 170 14 chr1 194366288 194366511 -87827153 - L2 LINE L2 -904 2410 2153 780 266 52 38 chr1 194366520 194366611 -87827053 + L1ME4a LINE L1 5523 5611 -510 1944 164 0 0 chr1 194366611 194366916 -87826748 + AluJo SINE Alu 1 305 -7 780 266 52 38 chr1 194366916 194367192 -87826472 + L1ME4a LINE L1 5611 5895 -226 37782 81 13 9 chr1 194367305 194373423 -87820241 + L1PA6 LINE L1 11 6152 -2 288 235 61 43 chr1 194373447 194373562 -87820102 + L1ME4a LINE L1 6005 6121 0 1042 271 118 37 chr1 194375683 194376292 -87817372 - L2 LINE L2 0 3313 2665 612 294 57 9 chr1 194376292 194376520 -87817144 + MIR SINE MIR 3 241 -21 279 0 0 0 chr1 194376704 194376735 -87816929 + (TG)n Simple_repeat Simple_repeat 2 32 0 763 175 78 0 chr1 194376850 194377004 -87816660 + AluJb SINE Alu 134 299 -13 242 273 0 0 chr1 194378032 194378087 -87815577 + CT-rich Low_complexity Low_complexity 2 56 0 347 288 104 0 chr1 194378968 194379093 -87814571 + MIR SINE MIR 54 191 -71 318 50 0 0 chr1 194379159 194379199 -87814465 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1549 48 0 0 chr1 194379199 194379386 -87814278 - L1PA7 LINE L1 -11 6143 5957 1994 60 16 0 chr1 194379386 194379638 -87814026 + L1PA7 LINE L1 5530 5785 -369 44368 37 2 1 chr1 194379638 194385787 -87807877 + L1PA3 LINE L1 1 6155 0 1388 57 0 0 chr1 194385798 194385974 -87807690 + L1PA7 LINE L1 5769 5944 -210 195 42 0 0 chr1 194390214 194390238 -87803426 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 25 0 0 0 chr1 194392034 194392059 -87801605 + AT_rich Low_complexity Low_complexity 1 25 0 2705 98 2 36 chr1 194393786 194394203 -87799461 + L1PA15 LINE L1 5763 6165 0 855 126 0 0 chr1 194394225 194394371 -87799293 - FLAM_C SINE Alu 0 146 1 501 341 16 8 chr1 194395440 194395689 -87797975 + L1ME LINE L1 5560 5810 -311 22 70 0 0 chr1 194395694 194395737 -87797927 + AT_rich Low_complexity Low_complexity 1 43 0 476 73 375 0 chr1 194395842 194395938 -87797726 + L1PA16 LINE L1 6026 6157 -9 783 276 94 24 chr1 194397261 194397558 -87796106 - L2 LINE L2 -681 2633 2316 1339 206 62 75 chr1 194397566 194397701 -87795963 - MLT1I LTR MaLR -6 403 268 1815 167 7 3 chr1 194397701 194398000 -87795664 - AluSx SINE Alu -12 300 1 1339 206 62 75 chr1 194398000 194398248 -87795416 - MLT1I LTR MaLR -141 268 25 453 327 175 0 chr1 194398260 194398477 -87795187 - L2 LINE L2 -997 2317 2063 255 226 0 0 chr1 194399524 194399577 -87794087 - Tigger5 DNA MER2_type 0 2323 2271 388 234 13 0 chr1 194399586 194399663 -87794001 - Tigger5 DNA MER2_type -2244 79 2 1158 198 33 0 chr1 194399684 194399896 -87793768 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chr1 194400248 194400279 -87793385 + AT_rich Low_complexity Low_complexity 1 31 0 2952 132 19 13 chr1 194400869 194401345 -87792319 + L1PA16 LINE L1 5678 6156 -10 1003 142 41 0 chr1 194401424 194401593 -87792071 + MER20 DNA MER1_type 42 217 -2 338 298 24 32 chr1 194401593 194401717 -87791947 - MIR SINE MIR -120 142 20 365 263 44 0 chr1 194401771 194401885 -87791779 - L1ME LINE L1 -420 5701 5583 46 19 0 0 chr1 194401885 194401938 -87791726 + AT_rich Low_complexity Low_complexity 1 53 0 601 272 120 5 chr1 194402200 194402391 -87791273 + MIR SINE MIR 46 258 -4 400 292 19 0 chr1 194402834 194402988 -87790676 - MER103 DNA DNA -2 164 8 357 298 31 73 chr1 194403107 194403228 -87790436 + MER5A DNA MER1_type 7 121 -68 2199 91 7 0 chr1 194403228 194403606 -87790058 - AluSq SINE Alu 0 380 1 357 298 31 73 chr1 194403606 194403673 -87789991 + MER5A DNA MER1_type 121 189 0 240 310 230 0 chr1 194405151 194405238 -87788426 - L2 LINE L2 -9 3263 3157 181 338 35 42 chr1 194405419 194405561 -87788103 - L2 LINE L2 -596 2718 2578 1596 131 20 50 chr1 194406081 194406378 -87787286 - L1PA15 LINE L1 -1893 4253 3966 * 5226 162 91 6 chr1 194406369 194408137 -87785527 + L1PA15 LINE L1 4227 6165 0 183 205 0 0 chr1 194410942 194410981 -87782683 + (CA)n Simple_repeat Simple_repeat 1 39 0 310 289 193 0 chr1 194411050 194411164 -87782500 - L2 LINE L2 0 3272 3137 2044 68 0 11 chr1 194411279 194411542 -87782122 + AluY SINE Alu 50 309 -2 297 321 107 51 chr1 194411556 194411894 -87781770 - L2 LINE L2 -219 3053 2695 823 277 94 73 chr1 194412428 194413150 -87780514 + L1MEd LINE L1 440 1176 -4943 552 274 25 21 chr1 194413145 194413343 -87780321 + L1ME3A LINE L1 5679 5881 -285 * 317 225 94 31 chr1 194413633 194413841 -87779823 + L1MEd LINE L1 1221 1491 -999 249 398 0 0 chr1 194413849 194413932 -87779732 - MIR SINE MIR -160 102 20 476 332 37 33 chr1 194414111 194414325 -87779339 - MIR SINE MIR -6 256 42 400 272 114 22 chr1 194414604 194414788 -87778876 + MIR SINE MIR 50 250 -12 300 27 0 0 chr1 194415708 194415745 -87777919 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr1 194416755 194416787 -87776877 + AT_rich Low_complexity Low_complexity 1 32 0 181 395 23 0 chr1 194418703 194418789 -87774875 - MIR SINE MIR -79 183 96 189 0 0 0 chr1 194419480 194419501 -87774163 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 306 0 0 0 chr1 194419500 194419534 -87774130 + (GA)n Simple_repeat Simple_repeat 1 34 0 1373 179 36 16 chr1 194419611 194419909 -87773755 - MER61B LTR ERV1 -34 391 1 1332 304 81 29 chr1 194420009 194420690 -87772974 + L1MEd LINE L1 53 768 -5351 21 36 0 0 chr1 194420702 194420730 -87772934 + AT_rich Low_complexity Low_complexity 1 28 0 522 261 181 26 chr1 194420803 194420888 -87772776 + L1MEd LINE L1 922 992 -1498 924 186 73 44 chr1 194420888 194421092 -87772572 + MER63A DNA MER1_type 1 210 0 522 261 181 26 chr1 194421092 194421633 -87772031 + L1MEd LINE L1 992 1634 -856 4113 170 62 15 chr1 194422181 194423036 -87770628 + L1MC4a LINE L1 6697 7591 -217 556 226 40 12 chr1 194423039 194423201 -87770463 + L1MC4a LINE L1 7655 7808 0 333 0 0 0 chr1 194424517 194424554 -87769110 + (CA)n Simple_repeat Simple_repeat 2 38 0 232 286 98 27 chr1 194425709 194425821 -87767843 - L3b LINE CR1 -195 1388 1269 597 219 22 15 chr1 194426925 194427062 -87766602 + MER5B DNA MER1_type 37 174 -4 252 395 25 12 chr1 194427701 194427863 -87765801 - L2 LINE L2 -277 3036 2873 237 306 0 0 chr1 194428476 194428538 -87765126 - L2 LINE L2 0 3272 3211 242 351 114 41 chr1 194428552 194429138 -87764526 + L2 LINE L2 2157 2785 -529 223 274 45 89 chr1 194429412 194429591 -87764073 + L2 LINE L2 3125 3295 -18 1403 214 74 62 chr1 194429793 194430018 -87763646 + L1MC5 LINE L1 7323 7544 -417 2955 117 9 5 chr1 194430018 194430444 -87763220 + MSTA LTR MaLR 1 428 0 1403 214 74 62 chr1 194430444 194430816 -87762848 + L1MC5 LINE L1 7544 7927 -34 381 193 8 67 chr1 194430836 194430955 -87762709 + L1MC5 LINE L1 7638 7749 -212 1318 208 34 20 chr1 194431340 194431633 -87762031 + AluJo SINE Alu 2 298 -4 4795 184 35 9 chr1 194431910 194431931 -87761733 + L1M2 LINE L1 1837 1856 -4992 673 178 0 0 chr1 194431931 194432038 -87761626 + U6 snRNA snRNA 1 107 0 4795 184 35 9 chr1 194432038 194433181 -87760483 + L1M2 LINE L1 1856 3033 -3815 1548 145 8 12 chr1 194433182 194433424 -87760240 + THE1C LTR MaLR 1 241 -134 7853 173 19 13 chr1 194433426 194435029 -87758635 + L1M2 LINE L1 3249 4860 -1988 1025 159 66 59 chr1 194435029 194435159 -87758505 + MER33 DNA MER1_type 52 180 -2405 2057 148 69 3 chr1 194435159 194435523 -87758141 - MLT1B LTR MaLR 0 390 3 1025 159 66 59 chr1 194435523 194435663 -87758001 + MER33 DNA MER1_type 180 324 0 180 281 110 12 chr1 194435876 194435958 -87757706 + MIR SINE MIR 73 162 -100 * 840 208 42 21 chr1 194435946 194436138 -87757526 - MIR SINE MIR -1 261 66 180 315 171 44 chr1 194436407 194436588 -87757076 - L3 LINE CR1 -4 1573 1370 610 288 11 92 chr1 194436894 194437165 -87756499 - MIR SINE MIR -11 251 3 411 82 47 0 chr1 194437220 194437305 -87756359 + T-rich Low_complexity Low_complexity 4 92 0 2743 22 0 0 chr1 194437306 194437626 -87756038 - L1PA2 LINE L1 0 6155 5836 1902 177 0 0 chr1 194438066 194438371 -87755293 - AluJb SINE Alu -3 309 5 23 0 0 0 chr1 194439340 194439363 -87754301 + AT_rich Low_complexity Low_complexity 1 23 0 1242 163 92 21 chr1 194441156 194441395 -87752269 + AluJo SINE Alu 39 294 -18 249 263 0 0 chr1 194442682 194442739 -87750925 + MIR SINE MIR 196 252 -10 284 0 0 27 chr1 194442936 194442973 -87750691 + (TA)n Simple_repeat Simple_repeat 2 37 0 345 240 115 39 chr1 194445454 194445622 -87748042 + MIR3 SINE MIR 2 176 -66 244 327 36 64 chr1 194445909 194446019 -87747645 + MIR SINE MIR 25 131 -77 285 146 0 0 chr1 194446436 194446484 -87747180 + (CA)n Simple_repeat Simple_repeat 2 49 0 180 0 0 0 chr1 194446485 194446505 -87747159 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 214 227 23 11 chr1 194446853 194446941 -87746723 + (TA)n Simple_repeat Simple_repeat 2 90 0 549 258 44 13 chr1 194447806 194447984 -87745680 - MIR SINE MIR -62 146 13 572 244 47 47 chr1 194448499 194448712 -87744952 - L1ME3A LINE L1 -101 6069 5857 601 262 105 29 chr1 194449751 194449961 -87743703 - MIR SINE MIR -9 253 28 275 352 106 35 chr1 194450362 194450845 -87742819 + L2 LINE L2 2340 2856 -458 292 266 79 4 chr1 194451355 194451475 -87742189 + MIR SINE MIR 20 154 -67 559 209 16 89 chr1 194451535 194451726 -87741938 + MER104 DNA MER2_type 1 177 -3 2431 54 3 7 chr1 194452767 194453064 -87740600 + AluY SINE Alu 1 296 -15 2379 81 0 0 chr1 194453344 194453639 -87740025 + AluSx SINE Alu 2 296 -16 196 246 56 95 chr1 194455322 194455448 -87738216 + MIR SINE MIR 87 207 -55 749 240 138 9 chr1 194455597 194455814 -87737850 - MIR SINE MIR -3 259 15 911 172 116 10 chr1 194455820 194456018 -87737646 - MER20 DNA MER1_type 0 219 1 234 128 0 0 chr1 194456898 194456937 -87736727 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 194457432 194457453 -87736211 + AT_rich Low_complexity Low_complexity 1 21 0 2240 104 14 0 chr1 194460565 194460862 -87732802 - AluSx SINE Alu -11 301 1 208 344 0 0 chr1 194465498 194465559 -87728105 + CT-rich Low_complexity Low_complexity 2 62 0 318 223 25 8 chr1 194465772 194465893 -87727771 + GA-rich Low_complexity Low_complexity 2 124 0 273 257 119 30 chr1 194466402 194466503 -87727161 + L2 LINE L2 3179 3288 -25 661 156 227 0 chr1 194468329 194468483 -87725181 + MER5A DNA MER1_type 1 189 0 24 32 0 0 chr1 194469613 194469644 -87724020 + AT_rich Low_complexity Low_complexity 1 31 0 192 338 12 25 chr1 194469755 194469835 -87723829 - L2 LINE L2 -33 3239 3161 203 296 37 19 chr1 194470379 194470433 -87723231 - MIR SINE MIR -135 73 19 283 357 106 18 chr1 194470585 194470868 -87722796 - L2 LINE L2 -1 3312 3005 181 296 125 23 chr1 194471393 194471481 -87722183 - L2 LINE L2 0 3272 3176 228 219 0 0 chr1 194471829 194471870 -87721794 + FLAM_A SINE Alu 1 41 -90 194 140 0 40 chr1 194476474 194476524 -87717140 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 192 200 0 0 chr1 194477433 194477483 -87716181 + (TG)n Simple_repeat Simple_repeat 1 50 0 2368 69 7 3 chr1 194478614 194478918 -87714746 - AluY SINE Alu -6 305 1 448 221 78 13 chr1 194479768 194479922 -87713742 + MER103 DNA DNA 2 165 -1 639 129 10 0 chr1 194480061 194480162 -87713502 + FLAM_A SINE Alu 34 135 -7 1508 185 3 67 chr1 194480178 194480492 -87713172 + AluJo SINE Alu 1 294 -18 2373 112 0 0 chr1 194480916 194481221 -87712443 - AluSx SINE Alu -7 305 1 198 71 0 0 chr1 194482459 194482487 -87711177 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 222 37 0 0 chr1 194483639 194483666 -87709998 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 508 163 12 0 chr1 194486840 194486926 -87706738 - Tigger5 DNA MER2_type 0 2323 2237 14465 137 38 6 chr1 194486969 194489325 -87704339 + L1M1 LINE L1 16 2447 -5118 2287 108 0 0 chr1 194489777 194490082 -87703582 - AluSx SINE Alu -7 305 1 8197 244 118 29 chr1 194491229 194494256 -87699408 + L2 LINE L2 3 3309 -4 450 245 137 17 chr1 194494465 194494615 -87699049 + MIR SINE MIR 25 211 -51 459 35 0 0 chr1 194494615 194494672 -87698992 + (CA)n Simple_repeat Simple_repeat 2 58 0 450 245 137 17 chr1 194494672 194494731 -87698933 + MIR SINE MIR 211 262 0 1771 171 10 7 chr1 194495834 194496132 -87697532 - AluJo SINE Alu -13 299 1 5318 126 40 1 chr1 194496132 194497005 -87696659 + Tigger1 DNA MER2_type 45 951 -1467 36354 81 10 6 chr1 194497013 194503151 -87690513 + L1PA6 LINE L1 11 6167 0 6990 119 111 8 chr1 194503184 194504532 -87689132 + Tigger1 DNA MER2_type 941 2418 0 469 180 203 0 chr1 194505789 194505917 -87687747 - MIR SINE MIR -21 241 88 360 0 0 0 chr1 194506744 194506784 -87686880 + (CA)n Simple_repeat Simple_repeat 2 41 0 535 274 128 27 chr1 194508389 194508608 -87685056 - MIR SINE MIR 0 262 22 415 292 9 9 chr1 194509790 194509903 -87683761 - L2 LINE L2 0 3313 3201 216 232 72 72 chr1 194510022 194510091 -87683573 - L3 LINE CR1 -1328 249 181 361 286 34 54 chr1 194510224 194510371 -87683293 + MIR SINE MIR 70 213 -49 303 198 66 22 chr1 194511852 194511943 -87681721 - Charlie8 DNA MER1_type -2216 201 107 281 254 30 15 chr1 194513998 194514065 -87679599 + L2 LINE L2 3246 3313 0 300 136 30 91 chr1 194516092 194516158 -87677506 + L1M4c LINE L1 217 278 -6106 2499 82 0 3 chr1 194517256 194517562 -87676102 - AluSg SINE Alu -5 305 1 360 323 0 0 chr1 194517651 194517750 -87675914 + MIR3 SINE MIR 85 183 -25 259 164 15 15 chr1 194517900 194517967 -87675697 + GA-rich Low_complexity Low_complexity 2 68 0 216 383 43 0 chr1 194518684 194518799 -87674865 - MIR SINE MIR -69 139 20 389 372 21 71 chr1 194518970 194519209 -87674455 - L2 LINE L2 0 3272 3046 241 314 73 16 chr1 194519566 194519690 -87673974 + L2 LINE L2 2954 3084 -188 202 313 60 0 chr1 194520235 194520302 -87673362 + L2 LINE L2 3147 3217 -55 235 269 108 32 chr1 194520361 194520454 -87673210 + L2 LINE L2 3214 3313 0 338 338 44 31 chr1 194521397 194521557 -87672107 - MER91A DNA MER1_type -13 183 22 6244 191 33 12 chr1 194523434 194525596 -87668068 + L1MB7 LINE L1 3949 6158 -26 232 277 109 40 chr1 194525995 194526096 -87667568 - L2 LINE L2 -9 3304 3197 392 293 71 75 chr1 194527074 194527327 -87666337 - L2 LINE L2 -43 3229 2978 1946 142 0 13 chr1 194528133 194528144 -87665520 - AluSx SINE Alu -9 303 293 195 69 0 0 chr1 194528144 194528173 -87665491 + (GTTTG)n Simple_repeat Simple_repeat 2 30 0 1946 142 0 13 chr1 194528173 194528464 -87665200 - AluSx SINE Alu -19 293 5 2197 115 3 3 chr1 194530293 194530605 -87663059 + AluSq SINE Alu 1 312 -1 435 52 0 0 chr1 194531960 194532018 -87661646 + (CA)n Simple_repeat Simple_repeat 1 58 0 218 237 72 72 chr1 194532926 194533023 -87660641 + MIR3 SINE MIR 1 97 -111 429 169 0 0 chr1 194534406 194534465 -87659199 + AluS SINE Alu 2 60 -258 2041 138 0 13 chr1 194534699 194535030 -87658634 + AluSx SINE Alu 1 312 0 844 175 0 7 chr1 194535038 194535181 -87658483 + FLAM_C SINE Alu 2 143 0 252 260 0 0 chr1 194535864 194535914 -87657750 + Charlie1 DNA MER1_type 18 67 -2694 201 167 0 0 chr1 194535987 194536023 -87657641 + A-rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 194536379 194536400 -87657264 + AT_rich Low_complexity Low_complexity 1 21 0 277 203 68 14 chr1 194536443 194536517 -87657147 - Charlie1 DNA MER1_type 0 2761 2684 784 205 5 126 chr1 194536549 194536764 -87656900 - Charlie1 DNA MER1_type -2555 206 18 232 235 62 25 chr1 194539293 194539374 -87654290 + L1MC4a LINE L1 6086 6169 -1639 211 0 28 56 chr1 194539748 194539784 -87653880 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 657 342 141 14 chr1 194539839 194540342 -87653322 - L3 LINE CR1 -429 1148 582 320 259 191 40 chr1 194540371 194540815 -87652849 - L1MC4 LINE L1 -1 8041 7531 441 261 25 17 chr1 194541314 194541433 -87652231 - MIR SINE MIR -72 190 71 180 0 0 0 chr1 194541972 194541992 -87651672 + (TG)n Simple_repeat Simple_repeat 2 21 0 212 333 44 70 chr1 194542538 194542652 -87651012 - L2 LINE L2 -20 3293 3183 321 306 127 15 chr1 194542853 194542987 -87650677 + MIR SINE MIR 10 158 -104 2112 168 20 6 chr1 194542987 194543502 -87650162 - MER39B LTR ERV1 0 653 4 407 163 174 0 chr1 194543503 194543595 -87650069 + MIR SINE MIR 153 260 -2 286 345 69 72 chr1 194543869 194544217 -87649447 - L2 LINE L2 0 3272 2926 484 314 152 23 chr1 194544490 194544971 -87648693 - L2 LINE L2 -1023 2291 1749 24 53 0 0 chr1 194545032 194545070 -87648594 + AT_rich Low_complexity Low_complexity 1 38 0 2412 43 40 0 chr1 194545115 194545414 -87648250 + AluY SINE Alu 1 311 0 561 233 14 34 chr1 194545763 194545909 -87647755 - L2 LINE L2 0 3313 3171 695 242 114 62 chr1 194546254 194546543 -87647121 + L1MEd LINE L1 318 621 -5498 1123 172 5 30 chr1 194546688 194546913 -87646751 - AluJo SINE Alu 0 311 92 240 300 50 0 chr1 194547333 194547393 -87646271 - L3b LINE CR1 -24 1559 1497 488 327 108 35 chr1 194547395 194547710 -87645954 + L2 LINE L2 2976 3313 0 1898 127 53 13 chr1 194547808 194547982 -87645682 - AluSx SINE Alu 0 312 120 271 0 51 0 chr1 194547982 194548021 -87645643 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1898 127 53 13 chr1 194548021 194548146 -87645518 - AluSx SINE Alu -192 120 1 263 281 0 0 chr1 194548206 194548270 -87645394 + L2 LINE L2 3209 3272 0 318 172 0 14 chr1 194548470 194548715 -87644949 + AluJo SINE Alu 1 282 -20 213 39 0 0 chr1 194548715 194548741 -87644923 + (GA)n Simple_repeat Simple_repeat 2 27 0 278 130 22 0 chr1 194549020 194549066 -87644598 - L2 LINE L2 0 3272 3226 274 211 0 56 chr1 194549069 194549140 -87644524 - MLT1K LTR MaLR -5 583 517 800 160 29 0 chr1 194550392 194550567 -87643097 + CT-rich Low_complexity Low_complexity 1 180 0 1537 170 3 42 chr1 194550588 194550871 -87642793 - AluJo SINE Alu -40 272 1 182 196 22 22 chr1 194551394 194551440 -87642224 + L2 LINE L2 3268 3313 0 287 251 39 26 chr1 194552051 194552230 -87641434 + MIR SINE MIR 5 257 -5 494 334 68 56 chr1 194552367 194552762 -87640902 + L2 LINE L2 2827 3226 -46 192 279 33 33 chr1 194553364 194553425 -87640239 - MIR SINE MIR -102 106 46 2172 116 7 0 chr1 194554072 194554364 -87639300 - AluSq SINE Alu -13 300 7 416 225 50 88 chr1 194554403 194554563 -87639101 + MER63A DNA MER1_type 54 207 -3 1258 221 45 27 chr1 194555042 194555373 -87638291 - MER4D LTR ERV1 0 903 567 1174 140 22 137 chr1 194555440 194555762 -87637902 - MER49 LTR ERV1 -638 285 1 591 279 29 17 chr1 194556411 194556583 -87637081 + MIR SINE MIR 1 174 -88 201 337 79 10 chr1 194557998 194558099 -87635565 - L3 LINE CR1 -19 1558 1451 635 267 41 70 chr1 194558254 194558340 -87635324 - L3 LINE CR1 -121 1456 1369 2143 129 0 7 chr1 194558340 194558657 -87635007 + AluSq SINE Alu 1 313 0 635 267 41 70 chr1 194558657 194558840 -87634824 - L3 LINE CR1 -208 1369 1195 3821 114 16 5 chr1 194559545 194560152 -87633512 - MER39B LTR ERV1 -38 615 2 1356 173 71 0 chr1 194560278 194560544 -87633120 + MER49 LTR ERV1 1 285 -638 1194 247 14 41 chr1 194560574 194560939 -87632725 + MER4D LTR ERV1 549 903 0 1778 191 68 32 chr1 194561614 194562055 -87631609 + LTR2B LTR ERV1 34 490 0 259 301 91 122 chr1 194562078 194562397 -87631267 - L2 LINE L2 -10 3262 2954 198 183 83 17 chr1 194563173 194563233 -87630431 - MIR SINE MIR -56 206 143 * 519 231 75 0 chr1 194563231 194563365 -87630299 + MIR SINE MIR 108 251 -11 586 232 18 0 chr1 194563380 194563492 -87630172 - MIR SINE MIR -131 131 18 699 246 11 5 chr1 194563608 194563795 -87629869 + MER5A DNA MER1_type 2 189 0 634 238 62 82 chr1 194564491 194564650 -87629014 - MIR SINE MIR -2 260 106 2429 77 0 0 chr1 194564650 194564947 -87628717 + AluSx SINE Alu 1 297 -15 634 238 62 82 chr1 194564947 194565031 -87628633 - MIR SINE MIR -156 106 22 506 252 83 65 chr1 194566612 194566842 -87626822 - L2 LINE L2 -4 3309 3076 595 155 17 9 chr1 194566957 194567073 -87626591 - FLAM_C SINE Alu -16 117 1 987 223 61 4 chr1 194567878 194568107 -87625557 + MIR SINE MIR 18 259 -3 204 203 87 29 chr1 194568825 194568894 -87624770 - MIR SINE MIR -56 206 134 240 268 0 85 chr1 194570633 194570715 -87622949 - MIR SINE MIR -75 187 113 196 277 54 89 chr1 194571641 194571753 -87621911 + MIR SINE MIR 16 123 -85 293 363 54 51 chr1 194572306 194572637 -87621027 + L2 LINE L2 2814 3145 -127 622 262 165 5 chr1 194572668 194572874 -87620790 - MIR SINE MIR -12 250 12 406 228 44 96 chr1 194572885 194573021 -87620643 + L2 LINE L2 3144 3272 0 2123 125 0 41 chr1 194574262 194574582 -87619082 + AluSx SINE Alu 4 310 -2 335 312 56 16 chr1 194574598 194574723 -87618941 - L2 LINE L2 0 3313 3184 192 316 10 41 chr1 194575277 194575375 -87618289 + MIR SINE MIR 103 197 -65 2030 120 0 74 chr1 194575715 194576041 -87617623 + AluSx SINE Alu 1 302 -10 1687 168 3 68 chr1 194576139 194576460 -87617204 - AluJb SINE Alu -12 300 1 247 253 24 24 chr1 194577649 194577732 -87615932 - MIR SINE MIR -100 162 80 291 207 0 0 chr1 194578449 194578507 -87615157 - MLT1K LTR MaLR -11 577 520 425 306 95 50 chr1 194579718 194579823 -87613841 - MIR SINE MIR -9 253 154 3422 112 138 65 chr1 194579823 194580467 -87613197 + LTR8 LTR ERV1 1 691 0 425 306 95 50 chr1 194580467 194580603 -87613061 - MIR SINE MIR -108 154 1 21 36 0 0 chr1 194581719 194581747 -87611917 + AT_rich Low_complexity Low_complexity 1 28 0 2223 90 0 0 chr1 194581747 194582053 -87611611 + AluSg SINE Alu 1 306 0 240 35 0 0 chr1 194582688 194582717 -87610947 + (TG)n Simple_repeat Simple_repeat 2 30 0 317 186 14 0 chr1 194582828 194582898 -87610766 + (TA)n Simple_repeat Simple_repeat 2 72 0 219 69 0 0 chr1 194585489 194585518 -87608146 + (A)n Simple_repeat Simple_repeat 1 29 0 1678 184 3 13 chr1 194585759 194586058 -87607606 + AluJo SINE Alu 1 296 -16 765 241 46 62 chr1 194587581 194587951 -87605713 - HAL1 LINE L1 -37 2470 2107 2767 249 106 48 chr1 194587989 194588014 -87605650 - HAL1 LINE L1 -481 2026 2004 1842 186 13 43 chr1 194588014 194588390 -87605274 + MLT1A1 LTR MaLR 1 365 0 2767 249 106 48 chr1 194588390 194589697 -87603967 - HAL1 LINE L1 -503 2004 617 536 263 130 20 chr1 194589774 194590074 -87603590 - L1MC4 LINE L1 -15 8027 7695 735 261 39 81 chr1 194590076 194590286 -87603378 - HAL1 LINE L1 -1972 535 344 1906 149 0 0 chr1 194590286 194590614 -87603050 - AluSx SINE Alu 0 328 1 735 261 39 81 chr1 194590614 194590759 -87602905 - HAL1 LINE L1 -2163 344 194 3382 109 93 112 chr1 194590817 194591484 -87602180 + MER39 LTR ERV1 4 659 -48 2676 20 0 0 chr1 194591484 194591781 -87601883 - AluY SINE Alu -14 297 1 3382 109 93 112 chr1 194591781 194591830 -87601834 + MER39 LTR ERV1 659 707 0 237 252 93 60 chr1 194591927 194592078 -87601586 - HAL1 LINE L1 -2329 178 23 487 238 29 63 chr1 194592613 194592663 -87601001 + MER112 DNA MER1_type 1 51 -209 2055 116 0 27 chr1 194592663 194593001 -87600663 + AluSx SINE Alu 1 312 0 487 238 29 63 chr1 194593001 194593254 -87600410 + MER112 DNA MER1_type 51 258 -2 1815 214 67 0 chr1 194593258 194593734 -87599930 + Charlie4a DNA MER1_type 1 508 0 182 220 250 0 chr1 194594610 194594710 -87598954 + L2 LINE L2 2376 2500 -814 1107 137 52 14 chr1 194595793 194596004 -87597660 - MER20 DNA MER1_type 0 219 1 28 0 0 0 chr1 194596056 194596084 -87597580 + AT_rich Low_complexity Low_complexity 1 28 0 239 127 0 18 chr1 194596717 194596772 -87596892 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 201 233 0 17 chr1 194598545 194598605 -87595059 + (CGG)n Simple_repeat Simple_repeat 2 60 0 659 232 104 45 chr1 194601427 194601647 -87592017 - MIR SINE MIR 0 262 30 423 328 1 9 chr1 194601656 194601812 -87591852 + MIR SINE MIR 39 191 -56 2029 157 126 22 chr1 194602001 194602454 -87591210 - MLT1D LTR MaLR 0 505 6 256 187 269 28 chr1 194602585 194602767 -87590897 - Charlie7 DNA MER1_type -78 2534 2309 * 609 213 237 12 chr1 194602763 194603016 -87590648 - Charlie7 DNA MER1_type -2078 534 225 311 193 155 0 chr1 194603229 194603309 -87590355 + MIR SINE MIR 54 143 -65 24 32 0 0 chr1 194603990 194604021 -87589643 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 194604933 194604954 -87588710 + AT_rich Low_complexity Low_complexity 1 21 0 239 152 22 0 chr1 194605064 194605110 -87588554 + MIR SINE MIR 195 241 -21 656 250 85 73 chr1 194605387 194605635 -87588029 - MIR SINE MIR -10 252 2 194 264 29 114 chr1 194605635 194605707 -87587957 + MIR SINE MIR 84 143 -65 236 195 0 0 chr1 194606442 194606483 -87587181 - MER2 DNA MER2_type -24 321 281 406 183 97 0 chr1 194606531 194606624 -87587040 - MER2 DNA MER2_type -135 210 109 659 212 93 0 chr1 194606705 194606856 -87586808 - MER2 DNA MER2_type -180 165 1 224 59 29 0 chr1 194607284 194607318 -87586346 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2357 76 3 10 chr1 194607490 194607791 -87585873 + AluSp SINE Alu 2 300 -13 1639 155 138 0 chr1 194607816 194608112 -87585552 + MER1B DNA MER1_type 1 337 0 697 314 144 65 chr1 194609995 194611141 -87582523 - L2 LINE L2 -343 2971 1736 215 218 129 59 chr1 194611141 194611242 -87582422 - MIR SINE MIR -1 261 154 195 114 0 0 chr1 194611274 194611309 -87582355 + (TCCG)n Simple_repeat Simple_repeat 2 36 0 266 0 29 0 chr1 194611309 194611343 -87582321 + (TTTCC)n Simple_repeat Simple_repeat 5 39 0 1182 170 0 18 chr1 194611343 194611561 -87582103 - AluJb SINE Alu -32 280 67 182 170 264 0 chr1 194611605 194611658 -87582006 - MIR SINE MIR -122 140 74 204 367 56 11 chr1 194611913 194612003 -87581661 + MIR3 SINE MIR 8 101 -107 1903 141 0 3 chr1 194612018 194612309 -87581355 + AluJb SINE Alu 1 290 -22 2623 179 32 2 chr1 194612309 194612811 -87580853 - L1ME2 LINE L1 -22 6142 5626 983 288 68 75 chr1 194612824 194613462 -87580202 + L1MC4 LINE L1 7323 8042 0 415 221 159 32 chr1 194613526 194613866 -87579798 - L1M4 LINE L1 -2683 3463 3081 373 267 160 26 chr1 194613909 194614440 -87579224 - L1M4 LINE L1 -3126 3020 2419 287 302 0 40 chr1 194615381 194615507 -87578157 - HAL1 LINE L1 -603 1904 1784 238 216 27 27 chr1 194615660 194615734 -87577930 - MER116 DNA Mariner -5 75 2 378 324 52 42 chr1 194616017 194616570 -87577094 - L1M4 LINE L1 -2045 4101 3543 21 0 0 0 chr1 194617568 194617589 -87576075 + AT_rich Low_complexity Low_complexity 1 21 0 586 331 22 0 chr1 194619206 194619387 -87574277 + L3 LINE CR1 1054 1238 -339 22 35 0 0 chr1 194619473 194619502 -87574162 + AT_rich Low_complexity Low_complexity 1 29 0 1019 136 20 45 chr1 194619746 194619889 -87573775 + MER33 DNA MER1_type 1 131 -2411 1981 78 4 8 chr1 194619889 194620145 -87573519 + AluSx SINE Alu 44 298 -14 1019 136 20 45 chr1 194620145 194620202 -87573462 + MER33 DNA MER1_type 131 188 -93 310 292 108 8 chr1 194620462 194620582 -87573082 - L2 LINE L2 0 3313 3182 2641 153 4 76 chr1 194624812 194625336 -87568328 - MER66B LTR ERV1 0 486 1 10901 107 52 31 chr1 194625336 194627054 -87566610 - MER66B-int LTR ERV1 0 6676 4924 449 252 24 0 chr1 194627057 194627180 -87566484 + MER66-int LTR ERV1 4341 4466 -2210 284 152 0 61 chr1 194627306 194627372 -87566292 + MER72 LTR ERV1 5 66 -656 2602 115 20 65 chr1 194627372 194627719 -87565945 - MER66-int LTR ERV1 -2275 4401 4083 2189 85 10 23 chr1 194627719 194628025 -87565639 - AluSc SINE Alu -5 304 3 2602 115 20 65 chr1 194628025 194628182 -87565482 - MER66-int LTR ERV1 -2593 4083 3920 1743 158 143 31 chr1 194628182 194628567 -87565097 + MSTA LTR MaLR 1 428 0 6306 205 24 3 chr1 194628567 194629784 -87563880 + MSTA-int LTR MaLR 1 1242 -409 1382 148 81 46 chr1 194629784 194630067 -87563597 + MSTA LTR MaLR 135 427 -1 2350 92 16 22 chr1 194630068 194630436 -87563228 - MER66B-int LTR ERV1 -2752 3924 3559 405 86 0 0 chr1 194630437 194630495 -87563169 + (TTCTG)n Simple_repeat Simple_repeat 2 59 0 365 64 0 0 chr1 194630498 194630545 -87563119 - MER66B-int LTR ERV1 -3226 3450 3404 623 192 48 16 chr1 194630552 194630677 -87562987 - MER66B-int LTR ERV1 -3598 3078 2950 3747 171 57 48 chr1 194630761 194631829 -87561835 - MER66B-int LTR ERV1 -5562 1114 1 2589 171 27 12 chr1 194631829 194632308 -87561356 - MER66B LTR ERV1 0 486 1 21 0 0 0 chr1 194632876 194632897 -87560767 + AT_rich Low_complexity Low_complexity 1 21 0 388 258 61 0 chr1 194632999 194633131 -87560533 - L1ME LINE L1 -390 5772 5633 2133 156 15 0 chr1 194633277 194633604 -87560060 + MER1B DNA MER1_type 8 339 0 240 186 0 0 chr1 194634818 194634861 -87558803 + L1P LINE L1 4634 4676 -1470 709 125 0 0 chr1 194634993 194635097 -87558567 + L1PA10 LINE L1 6055 6158 -10 27 0 0 0 chr1 194635397 194635424 -87558240 + AT_rich Low_complexity Low_complexity 1 27 0 325 260 62 0 chr1 194636399 194636495 -87557169 - L2 LINE L2 -214 3058 2957 9360 27 0 188 chr1 194636514 194638108 -87555556 + SVA Other Other 93 1386 0 737 215 57 94 chr1 194638435 194638700 -87554964 - L1ME1 LINE L1 -5 6161 5907 359 258 97 60 chr1 194638684 194639007 -87554657 - L1P4 LINE L1 -303 5818 5508 * 465 299 118 16 chr1 194639563 194639750 -87553914 - MIR SINE MIR -56 206 1 22 0 0 0 chr1 194639808 194639830 -87553834 + AT_rich Low_complexity Low_complexity 1 22 0 258 200 32 53 chr1 194639911 194640006 -87553658 - L1ME4a LINE L1 -102 6019 5927 186 279 0 0 chr1 194640086 194640129 -87553535 - L2 LINE L2 -6 3307 3265 221 208 14 0 chr1 194642487 194642559 -87551105 + (TA)n Simple_repeat Simple_repeat 1 73 0 23 54 0 0 chr1 194645305 194645342 -87548322 + AT_rich Low_complexity Low_complexity 1 37 0 210 141 31 31 chr1 194645549 194645613 -87548051 + CT-rich Low_complexity Low_complexity 1 64 0 2066 107 7 0 chr1 194646211 194646521 -87547143 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 194648231 194648252 -87545412 + AT_rich Low_complexity Low_complexity 1 21 0 1959 122 3 14 chr1 194649882 194650178 -87543486 + AluSx SINE Alu 1 293 -19 38022 71 7 5 chr1 194656666 194662811 -87530853 - L1PA5 LINE L1 -2 6152 3 371 328 97 15 chr1 194662923 194663118 -87530546 - L1M4 LINE L1 -1908 4238 4028 2080 209 78 39 chr1 194663259 194663956 -87529708 - L1M4 LINE L1 -903 5243 4520 1901 37 0 0 chr1 194664519 194664734 -87528930 + AluY SINE Alu 81 295 -16 229 266 97 53 chr1 194664850 194664963 -87528701 + L3 LINE CR1 1375 1492 -85 21 0 0 0 chr1 194665224 194665245 -87528419 + AT_rich Low_complexity Low_complexity 1 21 0 881 276 113 62 chr1 194665889 194666088 -87527576 - L2 LINE L2 -1 3312 3125 315 0 0 0 chr1 194666088 194666123 -87527541 + (TG)n Simple_repeat Simple_repeat 2 36 0 881 276 113 62 chr1 194666123 194666599 -87527065 - L2 LINE L2 -188 3125 2575 1842 150 3 33 chr1 194666599 194666906 -87526758 + AluSx SINE Alu 1 298 -14 881 276 113 62 chr1 194666906 194667112 -87526552 - L2 LINE L2 -738 2575 2381 25 51 0 0 chr1 194668761 194668800 -87524864 + AT_rich Low_complexity Low_complexity 1 39 0 517 240 60 20 chr1 194669048 194669198 -87524466 - L1ME3A LINE L1 -55 6115 5960 776 247 84 3 chr1 194669200 194669518 -87524146 - L1ME3A LINE L1 -307 5863 5491 2444 160 35 14 chr1 194669904 194670392 -87523272 - L1MB2 LINE L1 0 6171 5674 2445 219 39 12 chr1 194670392 194671060 -87522604 - L1MB2 LINE L1 -820 5326 4641 507 304 55 8 chr1 194671085 194671338 -87522326 - L1MB2 LINE L1 -1876 4270 4006 379 258 147 55 chr1 194671351 194671677 -87521987 - L1MB2 LINE L1 -2192 3954 3599 305 287 141 40 chr1 194672116 194672684 -87520980 - L1MEd LINE L1 -4888 1231 607 443 308 70 66 chr1 194672777 194673063 -87520601 - L1MEd LINE L1 -5747 372 86 555 222 257 0 chr1 194674342 194674513 -87519151 + MER58C DNA MER1_type 1 215 0 22 0 0 0 chr1 194674608 194674630 -87519034 + AT_rich Low_complexity Low_complexity 1 22 0 378 358 98 0 chr1 194674738 194674953 -87518711 + MIR SINE MIR 20 255 -7 1967 97 29 14 chr1 194677721 194677999 -87515665 + AluSx SINE Alu 12 293 -19 248 53 26 0 chr1 194678084 194678122 -87515542 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 153 24 12 chr1 194678471 194678556 -87515108 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 475 272 132 4 chr1 194678567 194678817 -87514847 - L1MC4 LINE L1 -144 7898 7617 2214 116 0 0 chr1 194679082 194679374 -87514290 + AluSq SINE Alu 1 292 -21 814 177 0 0 chr1 194679647 194679771 -87513893 + AluJo SINE Alu 1 124 -188 2235 96 3 17 chr1 194679795 194680096 -87513568 + AluSg SINE Alu 1 297 -13 195 42 0 0 chr1 194680129 194680153 -87513511 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1130 142 0 0 chr1 194680153 194680308 -87513356 + AluJo SINE Alu 132 286 -26 491 325 52 11 chr1 194680308 194680499 -87513165 + MIR SINE MIR 24 222 -40 1952 282 171 8 chr1 194680768 194681570 -87512094 + L2 LINE L2 35 967 -2347 1812 184 39 3 chr1 194681570 194681901 -87511763 + MER61A LTR ERV1 1 343 0 3853 120 108 17 chr1 194681904 194682623 -87511041 + MER61A-int LTR ERV1 4 788 -4429 273 100 0 0 chr1 194682603 194682643 -87511021 + MER61A-int LTR ERV1 1320 1359 -3858 * 20550 96 27 21 chr1 194682645 194685710 -87507954 + MER61A-int LTR ERV1 1746 6422 -574 5063 153 30 59 chr1 194685710 194686813 -87506851 - MER11C LTR ERVK 0 1071 1 20550 96 27 21 chr1 194686813 194687101 -87506563 + MER61A-int LTR ERV1 6422 6707 -289 1957 105 36 3 chr1 194687088 194687393 -87506271 + MER61A-int LTR ERV1 4903 5217 0 * 1968 167 39 0 chr1 194687393 194687723 -87505941 + MER61A LTR ERV1 1 343 0 1542 240 96 12 chr1 194687723 194688215 -87505449 + L2 LINE L2 964 1496 -1818 4317 130 16 29 chr1 194688257 194689025 -87504639 - MER4E LTR ERV1 -8 758 1 1865 237 123 10 chr1 194689025 194689602 -87504062 + L2 LINE L2 1564 2205 -1109 281 265 23 8 chr1 194689692 194689824 -87503840 + (TA)n Simple_repeat Simple_repeat 1 134 0 279 191 16 55 chr1 194689813 194689996 -87503668 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 * 488 157 12 29 chr1 194689996 194690168 -87503496 + (TA)n Simple_repeat Simple_repeat 1 169 0 306 137 44 55 chr1 194690186 194690368 -87503296 + (TA)n Simple_repeat Simple_repeat 1 180 0 259 109 0 0 chr1 194690379 194690425 -87503239 - MADE1 DNA Mariner 0 80 35 202 78 98 0 chr1 194690444 194690495 -87503169 + (TA)n Simple_repeat Simple_repeat 1 56 0 245 86 0 0 chr1 194690495 194690530 -87503134 - MADE1 DNA Mariner -33 47 13 1996 121 59 7 chr1 194690644 194690934 -87502730 + AluSx SINE Alu 1 305 -7 562 234 19 32 chr1 194691690 194691844 -87501820 + MLT1L LTR MaLR 132 283 -332 682 263 67 0 chr1 194691945 194692139 -87501525 + MLT1L LTR MaLR 407 613 -2 431 294 196 5 chr1 194692146 194692200 -87501464 - MIR SINE MIR -27 235 193 282 116 0 0 chr1 194692200 194692243 -87501421 + (CA)n Simple_repeat Simple_repeat 2 44 0 431 294 196 5 chr1 194692243 194692382 -87501282 - MIR SINE MIR -69 193 5 633 25 13 0 chr1 194694704 194694783 -87498881 + MADE1 DNA Mariner 1 80 0 418 271 69 131 chr1 194694833 194695124 -87498540 - L2 LINE L2 -43 3229 2957 2248 191 48 55 chr1 194696048 194696592 -87497072 - MER87 LTR ERV1 -1 540 1 1466 214 105 55 chr1 194697127 194697707 -87495957 + LTR1B LTR ERV1 1 609 -217 265 177 51 25 chr1 194697916 194697995 -87495669 - MER46C DNA MER2_type -1 337 257 787 197 122 28 chr1 194697995 194698208 -87495456 - MLT1A2 LTR MaLR -7 367 135 779 34 0 59 chr1 194698206 194698222 -87495442 - MER83B LTR ERV1 -266 112 97 * 2133 129 3 0 chr1 194698222 194698509 -87495155 - AluSc SINE Alu -5 304 17 779 34 0 59 chr1 194698509 194698611 -87495053 - MER83B LTR ERV1 -281 97 1 2059 125 0 38 chr1 194698718 194699038 -87494626 + AluSx SINE Alu 2 309 -3 2634 217 52 30 chr1 194699201 194699914 -87493750 + MER21B LTR ERV1 22 750 -113 348 314 0 19 chr1 194700213 194700318 -87493346 + MIR SINE MIR 32 134 -128 233 222 49 12 chr1 194700318 194700399 -87493265 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 2275 104 3 0 chr1 194700409 194700708 -87492956 + AluSx SINE Alu 1 300 -12 449 277 42 30 chr1 194700788 194700954 -87492710 + MLT1I LTR MaLR 104 271 -138 24 32 0 0 chr1 194701177 194701208 -87492456 + AT_rich Low_complexity Low_complexity 1 31 0 215 77 0 26 chr1 194701638 194701677 -87491987 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1459 156 24 23 chr1 194701677 194702015 -87491649 - MER61C LTR ERV1 -4 430 1 580 183 114 0 chr1 194702015 194702146 -87491518 + L2 LINE L2 3132 3277 -36 375 289 24 87 chr1 194702461 194702669 -87490995 - MIR SINE MIR 0 262 68 566 248 173 43 chr1 194702676 194703116 -87490548 - MLT1H1 LTR MaLR 0 555 59 503 301 12 73 chr1 194703207 194703453 -87490211 - MER102a DNA MER1_type -1 329 99 822 214 82 10 chr1 194703638 194703834 -87489830 - L2 LINE L2 0 3313 3104 211 274 154 43 chr1 194705912 194706029 -87487635 + L2 LINE L2 3141 3270 -2 245 108 0 0 chr1 194706085 194706122 -87487542 + MER21B LTR ERV1 207 243 -620 389 226 152 67 chr1 194706708 194706872 -87486792 - MLT1K LTR MaLR -8 580 403 539 320 83 25 chr1 194706899 194707177 -87486487 - MLT1K LTR MaLR -271 317 24 2240 116 0 10 chr1 194707245 194707548 -87486116 + AluSx SINE Alu 1 300 -12 371 292 35 0 chr1 194707931 194708044 -87485620 + MIR3 SINE MIR 52 168 -40 258 81 0 0 chr1 194708662 194708699 -87484965 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 336 102 0 0 chr1 194709181 194709230 -87484434 + (CA)n Simple_repeat Simple_repeat 1 49 0 237 317 123 87 chr1 194710459 194710793 -87482871 - L2 LINE L2 -8 3264 2919 22 56 0 0 chr1 194711169 194711205 -87482459 + AT_rich Low_complexity Low_complexity 1 36 0 458 277 26 58 chr1 194711422 194711577 -87482087 + MIR SINE MIR 103 252 -10 290 331 105 0 chr1 194711868 194711992 -87481672 + MIR3 SINE MIR 32 168 -40 1456 249 38 16 chr1 194712035 194712401 -87481263 + MLT1A2 LTR MaLR 1 374 0 2007 118 24 3 chr1 194712946 194713234 -87480430 - AluSx SINE Alu -14 298 5 311 344 0 0 chr1 194713279 194713369 -87480295 + MIR SINE MIR 48 137 -125 180 226 32 81 chr1 194713368 194713430 -87480234 - L2 LINE L2 0 3313 3255 * 508 329 95 41 chr1 194713973 194714101 -87479563 - L2 LINE L2 -9 3304 3184 180 111 0 0 chr1 194714101 194714128 -87479536 + (TG)n Simple_repeat Simple_repeat 2 28 0 508 329 95 41 chr1 194714128 194714576 -87479088 - L2 LINE L2 -129 3184 2703 314 191 91 82 chr1 194715188 194715298 -87478366 + LTR33A LTR ERVL 413 523 0 2113 168 11 8 chr1 194715678 194716035 -87477629 + MER46B DNA MER2_type 1 233 -3 393 238 19 38 chr1 194716215 194716320 -87477344 - MIR SINE MIR 0 262 160 488 351 5 0 chr1 194716695 194716900 -87476764 + HAL1 LINE L1 1427 1632 -875 25 31 0 0 chr1 194717409 194717441 -87476223 + AT_rich Low_complexity Low_complexity 1 32 0 388 279 104 19 chr1 194717680 194717834 -87475830 + LTR33 LTR ERVL 49 215 -306 335 219 88 26 chr1 194717913 194718027 -87475637 + LTR33 LTR ERVL 401 521 0 339 302 79 60 chr1 194718125 194718407 -87475257 + L1M4 LINE L1 4064 4358 -1788 1329 273 87 48 chr1 194718407 194718927 -87474737 - MLT1F LTR MaLR -2 540 1 339 302 79 60 chr1 194718927 194719064 -87474600 + L1M4 LINE L1 4358 4491 -1655 275 164 0 15 chr1 194719159 194719226 -87474438 + (TA)n Simple_repeat Simple_repeat 2 67 0 535 279 115 32 chr1 194719260 194719572 -87474092 + L1M4 LINE L1 4685 5022 -1124 494 286 28 35 chr1 194719585 194719947 -87473717 + L1M4 LINE L1 5255 5614 -564 950 260 12 28 chr1 194721282 194721536 -87472128 - MIR SINE MIR -9 253 4 2330 96 0 0 chr1 194721624 194721917 -87471747 + AluSc SINE Alu 1 293 -16 271 339 95 25 chr1 194722133 194722416 -87471248 - L2 LINE L2 -444 2870 2568 229 276 20 31 chr1 194722792 194722890 -87470774 - L2 LINE L2 -1048 2266 2170 216 0 0 0 chr1 194722919 194722943 -87470721 + (A)n Simple_repeat Simple_repeat 1 24 0 755 189 24 12 chr1 194722946 194723115 -87470549 + MER53 DNA DNA 18 188 -1 259 275 44 83 chr1 194723119 194723348 -87470316 - MER102a DNA MER1_type 0 330 111 33 0 0 0 chr1 194723348 194723381 -87470283 + AT_rich Low_complexity Low_complexity 1 33 0 1773 171 0 17 chr1 194723405 194723692 -87469972 + AluJo SINE Alu 1 282 -30 195 42 0 0 chr1 194723696 194723720 -87469944 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 198 118 0 0 chr1 194724405 194724439 -87469225 + (GA)n Simple_repeat Simple_repeat 2 35 0 354 195 0 0 chr1 194724725 194724802 -87468862 + (CCA)n Simple_repeat Simple_repeat 2 78 0 206 342 150 8 chr1 194725308 194725428 -87468236 - MIR3 SINE MIR -69 139 3 401 303 48 12 chr1 194726320 194726485 -87467179 - MIR3 SINE MIR -7 201 31 1186 281 71 44 chr1 194727087 194727750 -87465914 + L1ME4a LINE L1 5394 6074 -47 188 264 81 58 chr1 194727841 194727928 -87465736 - L2 LINE L2 -96 3217 3129 196 232 36 0 chr1 194728033 194728089 -87465575 - L2 LINE L2 -335 2978 2921 387 289 62 16 chr1 194729259 194729453 -87464211 + MIR SINE MIR 10 212 -50 299 227 191 36 chr1 194730378 194730488 -87463176 - L2 LINE L2 -10 3262 3136 251 389 0 0 chr1 194730588 194730660 -87463004 + L3 LINE CR1 1502 1573 -4 294 29 0 0 chr1 194732008 194732043 -87461621 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 194732184 194732205 -87461459 + AT_rich Low_complexity Low_complexity 1 21 0 327 333 19 9 chr1 194732547 194732655 -87461009 + MIR SINE MIR 6 114 -148 770 380 54 16 chr1 194732770 194733286 -87460378 + L2 LINE L2 705 1240 -2074 1101 167 13 62 chr1 194733516 194733743 -87459921 - MER20 DNA MER1_type -2 217 2 2200 87 0 24 chr1 194734202 194734500 -87459164 + AluY SINE Alu 2 292 -19 273 334 30 15 chr1 194734668 194734771 -87458893 + MIR SINE MIR 3 102 -106 267 303 40 81 chr1 194735045 194735243 -87458421 + L2 LINE L2 3114 3303 -10 205 175 0 0 chr1 194737410 194737450 -87456214 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 1231 267 222 14 chr1 194737450 194738171 -87455493 - L2 LINE L2 0 3313 2433 528 301 43 47 chr1 194738367 194738623 -87455041 - L3 LINE CR1 -6 1571 1317 241 260 68 14 chr1 194738672 194738745 -87454919 - MIR SINE MIR -66 196 120 28 48 0 0 chr1 194738973 194739015 -87454649 + AT_rich Low_complexity Low_complexity 1 42 0 195 42 0 0 chr1 194739085 194739109 -87454555 + (TC)n Simple_repeat Simple_repeat 1 24 0 429 265 5 70 chr1 194739181 194739364 -87454300 + MIR SINE MIR 20 190 -56 2170 111 3 0 chr1 194739785 194740074 -87453590 - AluSq SINE Alu -23 290 1 333 291 145 57 chr1 194741326 194741458 -87452206 - MIR SINE MIR 0 262 143 2381 75 7 10 chr1 194741458 194741766 -87451898 + AluSp SINE Alu 1 307 -6 333 291 145 57 chr1 194741766 194741860 -87451804 - MIR SINE MIR -119 143 16 4275 88 25 16 chr1 194741875 194742423 -87451241 + MER41A LTR ERV1 1 553 -1 622 247 93 89 chr1 194742537 194742828 -87450836 - L2 LINE L2 -1 3312 3021 433 256 65 42 chr1 194742913 194743081 -87450583 - MER20B DNA MER1_type -609 174 3 339 301 80 89 chr1 194743095 194743397 -87450267 - L2 LINE L2 -378 2936 2638 351 286 117 66 chr1 194743606 194743795 -87449869 - L1ME LINE L1 -302 5819 5641 2020 125 7 0 chr1 194743795 194744082 -87449582 - AluSx SINE Alu -21 291 3 351 286 117 66 chr1 194744082 194744392 -87449272 - L1ME LINE L1 -480 5641 5289 3366 184 86 20 chr1 194744397 194745061 -87448603 - MER50 LTR ERV1 -23 711 4 24 0 0 0 chr1 194745304 194745328 -87448336 + AT_rich Low_complexity Low_complexity 1 24 0 36 23 0 0 chr1 194745511 194745554 -87448110 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr1 194745578 194745606 -87448058 + AT_rich Low_complexity Low_complexity 1 28 0 420 272 51 84 chr1 194745620 194745991 -87447673 - L1ME LINE L1 -1446 4700 4342 239 321 111 0 chr1 194746222 194746384 -87447280 + LTR33A LTR ERVL 114 293 -230 260 211 189 11 chr1 194746456 194746551 -87447113 + LTR33A LTR ERVL 412 523 0 233 287 194 16 chr1 194746765 194746894 -87446770 - MIR SINE MIR -79 183 32 360 295 57 0 chr1 194748455 194748560 -87445104 + L2 LINE L2 3160 3270 -2 22 0 0 0 chr1 194748999 194749021 -87444643 + AT_rich Low_complexity Low_complexity 1 22 0 6069 136 9 0 chr1 194749021 194750349 -87443315 - L1PA15 LINE L1 0 6165 4833 2282 125 0 0 chr1 194751118 194751423 -87442241 - AluSx SINE Alu -7 305 1 290 315 43 106 chr1 194751559 194751813 -87441851 - L2 LINE L2 -6 3266 3029 1907 183 0 3 chr1 194752049 194752360 -87441304 - AluJb SINE Alu -2 310 1 221 240 231 29 chr1 194752477 194752581 -87441083 + L2 LINE L2 3188 3312 -1 3114 93 20 40 chr1 194753460 194753510 -87440154 - MLT2A1 LTR ERVL -3 441 392 246 32 0 0 chr1 194753510 194753541 -87440123 + (TG)n Simple_repeat Simple_repeat 2 32 0 3114 93 20 40 chr1 194753541 194753940 -87439724 - MLT2A1 LTR ERVL -52 392 1 38117 67 6 2 chr1 194753940 194759447 -87434217 - HERVL-A1 LTR ERVL 0 5654 125 555 195 6 9 chr1 194759447 194759803 -87433861 + (TA)n Simple_repeat Simple_repeat 1 354 0 308 258 0 21 chr1 194759811 194759904 -87433760 - L1MC4 LINE L1 -1339 6703 6613 309 188 0 99 chr1 194759941 194760042 -87433622 - L1MC4 LINE L1 -1339 6703 6613 600 119 0 0 chr1 194760045 194760154 -87433510 + (TA)n Simple_repeat Simple_repeat 2 110 0 2062 96 26 6 chr1 194760157 194760470 -87433194 - MLT2A1 LTR ERVL -125 319 1 288 351 127 38 chr1 194760603 194761186 -87432478 - L2 LINE L2 -27 3245 2613 370 283 30 10 chr1 194761279 194761378 -87432286 - MIR SINE MIR -62 146 46 270 379 95 4 chr1 194761439 194761703 -87431961 - L2 LINE L2 -701 2613 2326 1447 312 31 9 chr1 194761811 194762366 -87431298 - HERV16 LTR ERVL -2108 2888 2322 1063 306 30 21 chr1 194762453 194762884 -87430780 - HERV16 LTR ERVL -4198 798 364 719 174 5 47 chr1 194763909 194764099 -87429565 + MER69 DNA AcHobo 2336 2517 -9 257 156 0 22 chr1 194765146 194765191 -87428473 - L2 LINE L2 -2 3270 3227 203 204 143 0 chr1 194765157 194765206 -87428458 - MIR SINE MIR -6 256 201 * 210 316 31 10 chr1 194765647 194765745 -87427919 + L2 LINE L2 2722 2821 -493 283 296 61 17 chr1 194765792 194765907 -87427757 + L2 LINE L2 2985 3104 -209 664 304 23 28 chr1 194766031 194766248 -87427416 - MIR SINE MIR -32 230 15 552 200 179 2 chr1 194766580 194766720 -87426944 - MER5A DNA MER1_type -21 168 4 199 211 322 0 chr1 194766852 194766942 -87426722 + L2 LINE L2 3190 3308 -5 3811 244 34 57 chr1 194767260 194768818 -87424846 - L2 LINE L2 -37 3276 1756 346 109 0 0 chr1 194770637 194770692 -87422972 + L1MA8 LINE L1 6202 6256 -35 480 279 120 82 chr1 194771578 194772520 -87421144 + L2 LINE L2 2310 3310 -3 649 298 186 30 chr1 194774805 194775282 -87418382 + L2 LINE L2 2655 3192 -121 229 229 0 0 chr1 194775307 194775355 -87418309 + T-rich Low_complexity Low_complexity 1 48 0 1485 220 107 9 chr1 194775456 194775916 -87417748 - L1ME2 LINE L1 -91 6073 5569 705 150 0 0 chr1 194776362 194776495 -87417169 + CT-rich Low_complexity Low_complexity 3 135 0 1364 199 80 15 chr1 194778017 194778428 -87415236 - Charlie4a DNA MER1_type -54 454 17 395 279 161 12 chr1 194779352 194779513 -87414151 + MER5A DNA MER1_type 5 189 0 403 369 27 9 chr1 194781271 194781493 -87412171 + L3 LINE CR1 1012 1237 -340 2754 7 0 3 chr1 194782434 194782738 -87410926 + AluY SINE Alu 1 303 -8 23 0 0 0 chr1 194782911 194782934 -87410730 + AT_rich Low_complexity Low_complexity 1 23 0 242 292 90 11 chr1 194783563 194783652 -87410012 + MIR SINE MIR 14 109 -153 387 248 102 63 chr1 194783687 194783893 -87409771 - MLT1K LTR MaLR -6 582 369 256 266 0 25 chr1 194784420 194784499 -87409165 + MIR SINE MIR 40 116 -92 266 280 89 110 chr1 194784638 194784874 -87408790 + MIR SINE MIR 29 259 -3 251 224 0 0 chr1 194785114 194785172 -87408492 + T-rich Low_complexity Low_complexity 1 58 0 2031 158 0 0 chr1 194786094 194786404 -87407260 - AluSx SINE Alu -2 310 1 257 408 8 0 chr1 194786769 194786889 -87406775 + MIR SINE MIR 47 167 -95 30 27 0 0 chr1 194786933 194786970 -87406694 + AT_rich Low_complexity Low_complexity 1 37 0 656 208 48 24 chr1 194787135 194787342 -87406322 - PABL_B LTR ERV1 0 667 456 238 220 0 0 chr1 194787797 194787847 -87405817 - PABL_B LTR ERV1 -617 50 1 1902 163 0 0 chr1 194787982 194788265 -87405399 + AluJb SINE Alu 1 283 -29 311 278 67 117 chr1 194788374 194788554 -87405110 - MIR3 SINE MIR -18 190 20 469 254 27 9 chr1 194788663 194788835 -87404829 + MER4E LTR ERV1 1 284 -588 * 1495 210 39 6 chr1 194788833 194789171 -87404493 + MER4D LTR ERV1 547 895 -8 1067 166 9 19 chr1 194789483 194789694 -87403970 + L1PB4 LINE L1 5941 6149 -7 23 33 0 0 chr1 194789694 194789724 -87403940 + AT_rich Low_complexity Low_complexity 1 30 0 268 308 62 39 chr1 194790362 194790492 -87403172 - MIR SINE MIR -109 153 21 258 235 97 49 chr1 194790719 194790847 -87402817 + MIR SINE MIR 23 153 -75 27 62 0 0 chr1 194791201 194791249 -87402415 + AT_rich Low_complexity Low_complexity 1 48 0 253 333 18 26 chr1 194791782 194791896 -87401768 + MIR3 SINE MIR 85 197 -11 765 317 98 24 chr1 194792112 194792563 -87401101 + L1M2 LINE L1 10 493 -6356 285 347 28 28 chr1 194793269 194793589 -87400075 + L1PA15-16 LINE L1 1240 1559 -5290 356 265 10 10 chr1 194793593 194793695 -87399969 + L1PA15-16 LINE L1 1472 1573 -5276 * 5381 238 36 24 chr1 194793672 194794129 -87399535 + L1PA15-16 LINE L1 1336 1786 -5063 2589 108 6 3 chr1 194794129 194794490 -87399174 - THE1B LTR MaLR -2 362 1 5381 238 36 24 chr1 194794490 194796655 -87397009 + L1PA15-16 LINE L1 1786 3923 -2926 1949 141 0 29 chr1 194796655 194796961 -87396703 + AluSq SINE Alu 1 297 -16 5381 238 36 24 chr1 194796961 194797131 -87396533 + L1PA15-16 LINE L1 3923 4089 -2760 1645 57 0 102 chr1 194797131 194797376 -87396288 + AluY SINE Alu 86 305 -6 5381 238 36 24 chr1 194797376 194797604 -87396060 + L1PA15-16 LINE L1 4089 4425 -2424 365 190 0 0 chr1 194797603 194797682 -87395982 + L1P5 LINE L1 5711 5789 -367 * 677 252 108 23 chr1 194797693 194797951 -87395713 - L1ME LINE L1 -1062 6503 6224 546 112 17 35 chr1 194797951 194798067 -87395597 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 237 170 0 0 chr1 194798076 194798123 -87395541 - L1M4 LINE L1 -1355 4791 4745 783 185 66 106 chr1 194798125 194798275 -87395389 - MER20 DNA MER1_type 0 219 79 2174 143 67 7 chr1 194798275 194798695 -87394969 + L1MA4 LINE L1 5850 6294 -6 783 185 66 106 chr1 194798695 194798771 -87394893 - MER20 DNA MER1_type -140 79 2 4708 244 56 39 chr1 194798773 194800540 -87393124 - L1M4 LINE L1 -1397 4749 3014 1859 138 10 14 chr1 194800540 194800829 -87392835 - AluSx SINE Alu -24 288 1 4708 244 56 39 chr1 194800829 194801052 -87392612 - L1M4 LINE L1 -3132 3014 2718 969 250 19 0 chr1 194801052 194801268 -87392396 - MER58A DNA MER1_type -4 220 1 4708 244 56 39 chr1 194801268 194801393 -87392271 - L1M4 LINE L1 -3428 2718 2597 751 256 103 11 chr1 194802336 194802695 -87390969 - L1M4 LINE L1 -3527 2619 2228 424 193 50 0 chr1 194802694 194802813 -87390851 - L1MEc LINE L1 -3160 4405 4281 * 2079 145 7 0 chr1 194802813 194803123 -87390541 - AluSx SINE Alu 0 312 1 431 253 7 7 chr1 194803153 194803331 -87390333 - L1MEc LINE L1 -3931 3634 3497 272 59 0 0 chr1 194803343 194803377 -87390287 - Tigger1 DNA MER2_type -227 2191 2158 9571 211 33 15 chr1 194803379 194804558 -87389106 - L1ME LINE L1 -1554 6011 4854 483 63 0 0 chr1 194804558 194804621 -87389043 + (TA)n Simple_repeat Simple_repeat 1 63 0 9571 211 33 15 chr1 194804621 194805777 -87387887 - L1ME LINE L1 -2711 4854 3616 1976 141 3 3 chr1 194805777 194806084 -87387580 + AluSx SINE Alu 1 307 0 9571 211 33 15 chr1 194806084 194806413 -87387251 - L1ME LINE L1 -3949 3616 3294 1228 270 60 56 chr1 194806437 194807260 -87386404 - L1ME LINE L1 -4981 2574 1813 312 311 39 58 chr1 194807743 194807949 -87385715 - L1ME LINE L1 -5867 1688 1487 239 272 33 11 chr1 194808027 194808119 -87385545 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 235 241 69 0 chr1 194808230 194808288 -87385376 - L2 LINE L2 -4 3309 3248 625 274 30 20 chr1 194808649 194808850 -87384814 - Charlie8 DNA MER1_type -2213 204 2 28 61 0 0 chr1 194809189 194809238 -87384426 + AT_rich Low_complexity Low_complexity 1 49 0 279 310 20 10 chr1 194809620 194809720 -87383944 + MIR SINE MIR 44 144 -118 1427 174 7 3 chr1 194809723 194810017 -87383647 + L1MA7 LINE L1 5975 6269 -22 1621 204 50 28 chr1 194811135 194811533 -87382131 + MER90 LTR ERV1 53 459 -155 285 327 0 0 chr1 194812531 194812638 -87381026 - MER117 DNA MER1_type -82 115 9 1766 137 38 4 chr1 194812968 194813325 -87380339 - AluJb SINE Alu 0 387 22 24 0 0 0 chr1 194813506 194813530 -87380134 + AT_rich Low_complexity Low_complexity 1 24 0 226 301 60 0 chr1 194813572 194813655 -87380009 - LTR67 LTR ERVL -15 542 455 1800 103 19 0 chr1 194815755 194816017 -87377647 - L1PA13 LINE L1 -4 6159 5893 1891 179 27 67 chr1 194816024 194816549 -87377115 - Charlie4a DNA MER1_type -2 506 3 280 305 31 31 chr1 194817779 194817931 -87375733 - MIR SINE MIR -73 135 30 2290 78 7 17 chr1 194817956 194818252 -87375412 + AluY SINE Alu 1 293 -18 238 273 0 0 chr1 194818898 194818953 -87374711 + CT-rich Low_complexity Low_complexity 1 55 0 223 355 19 19 chr1 194819093 194819200 -87374464 - L2 LINE L2 -181 3091 2985 527 81 0 0 chr1 194820112 194820186 -87373478 + L1PA8 LINE L1 6099 6172 0 274 357 25 13 chr1 194820547 194820704 -87372960 - MER5B DNA MER1_type -17 161 3 1784 168 34 23 chr1 194822134 194822587 -87371077 - L1MC/D LINE L1 -700 5644 5189 299 310 203 10 chr1 194823013 194823210 -87370454 + MIR SINE MIR 22 256 -6 186 352 49 14 chr1 194823524 194823666 -87369998 - L2 LINE L2 -4 3309 3163 228 308 0 0 chr1 194823880 194823945 -87369719 + T-rich Low_complexity Low_complexity 2 66 0 1769 176 36 44 chr1 194824635 194825022 -87368642 + MLT1B LTR MaLR 7 390 0 247 378 21 56 chr1 194825531 194825674 -87367990 - L2 LINE L2 -18 3254 3117 458 279 144 22 chr1 194825975 194826197 -87367467 - L2 LINE L2 -622 2692 2444 186 43 0 0 chr1 194826271 194826294 -87367370 + (CA)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr1 194826383 194826418 -87367246 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr1 194826820 194826848 -87366816 + AT_rich Low_complexity Low_complexity 1 28 0 187 374 61 0 chr1 194828785 194828884 -87364780 + L2 LINE L2 3121 3225 -47 23 0 0 0 chr1 194830308 194830331 -87363333 + AT_rich Low_complexity Low_complexity 1 23 0 834 272 35 0 chr1 194830525 194830753 -87362911 - MLT1I LTR MaLR -25 384 149 308 296 35 0 chr1 194831262 194831377 -87362287 + MLT1J1 LTR MaLR 17 135 -311 228 260 98 32 chr1 194831478 194831601 -87362063 + MLT1J2 LTR MaLR 279 409 -41 1274 242 28 3 chr1 194831812 194832134 -87361530 - MLT1I LTR MaLR 0 409 80 1539 212 11 3 chr1 194832269 194832583 -87361081 - AluJo SINE Alu 0 316 1 1139 236 114 103 chr1 194832839 194833453 -87360211 - MLT1E2 LTR MaLR 0 626 4 836 293 206 42 chr1 194834902 194834961 -87358703 + L2 LINE L2 2148 2196 -1118 353 121 0 0 chr1 194834961 194835019 -87358645 - L1MA1 LINE L1 0 6302 6245 836 293 206 42 chr1 194835019 194835470 -87358194 + L2 LINE L2 2196 2572 -742 997 214 4 48 chr1 194835470 194835699 -87357965 + MER20 DNA MER1_type 1 219 0 836 293 206 42 chr1 194835699 194835897 -87357767 + L2 LINE L2 2572 2973 -341 439 329 5 59 chr1 194835875 194835946 -87357718 + L2 LINE L2 3104 3177 -136 * 2054 172 26 10 chr1 194835946 194836329 -87357335 - MLT1B LTR MaLR 0 390 2 439 329 5 59 chr1 194836329 194836479 -87357185 + L2 LINE L2 3177 3313 0 609 379 100 2 chr1 194836502 194837001 -87356663 - L2 LINE L2 -798 2516 1969 204 310 183 31 chr1 194837292 194837521 -87356143 - L2 LINE L2 -1336 1978 1715 247 339 18 77 chr1 194838774 194838942 -87354722 - L2 LINE L2 -1 3312 3155 200 398 0 9 chr1 194839457 194839570 -87354094 - L2 LINE L2 -943 2371 2260 250 332 51 43 chr1 194839691 194839926 -87353738 - L2 LINE L2 -2296 1018 782 242 324 28 19 chr1 194840844 194840952 -87352712 + MIR3 SINE MIR 87 195 -13 273 29 0 0 chr1 194842009 194842044 -87351620 + MADE1 DNA Mariner 46 80 0 2198 223 142 5 chr1 194843167 194843755 -87349909 + MER76 LTR ERV 1 676 -12 387 0 0 0 chr1 194843755 194843798 -87349866 + (TC)n Simple_repeat Simple_repeat 1 43 0 2198 223 142 5 chr1 194843798 194843814 -87349850 + MER76 LTR ERV 676 688 0 503 230 71 8 chr1 194843815 194843941 -87349723 + MIR SINE MIR 59 192 -70 718 278 43 13 chr1 194845177 194845411 -87348253 + LTR16C LTR ERVL 251 491 0 387 60 0 0 chr1 194845549 194845599 -87348065 + (CA)n Simple_repeat Simple_repeat 2 51 0 184 349 0 0 chr1 194846629 194846672 -87346992 - L2 LINE L2 -92 3180 3138 19631 157 33 10 chr1 194847434 194851600 -87342064 - L1MA2 LINE L1 -305 7418 3008 1572 71 5 10 chr1 194851600 194851798 -87341866 + AluY SINE Alu 95 291 -20 19631 157 33 10 chr1 194851798 194854802 -87338862 - L1MA2 LINE L1 -4715 3008 75 454 296 68 6 chr1 194854803 194854965 -87338699 + MIR SINE MIR 68 239 -23 786 264 0 0 chr1 194855295 194855469 -87338195 - MER45A DNA AcHobo -3 175 2 201 132 0 0 chr1 194855818 194855856 -87337808 + (TG)n Simple_repeat Simple_repeat 1 38 0 265 417 0 0 chr1 194856498 194856613 -87337051 + MIR3 SINE MIR 61 175 -33 6803 207 54 20 chr1 194856808 194858488 -87335176 - L1MB7 LINE L1 -7 6177 4354 2094 113 0 24 chr1 194858488 194858807 -87334857 + AluSx SINE Alu 1 312 0 6803 207 54 20 chr1 194858807 194860158 -87333506 - L1MB7 LINE L1 -1830 4354 3049 755 207 61 18 chr1 194860168 194860332 -87333332 - AluJo SINE Alu -20 292 122 599 216 84 5 chr1 194860338 194860551 -87333113 - L1MB7 LINE L1 -3125 3021 2792 1286 251 82 63 chr1 194860572 194861082 -87332582 + MER21B LTR ERV1 12 531 -332 1977 139 20 127 chr1 194861082 194861580 -87332084 - MER65A LTR ERV1 0 445 1 2469 218 47 20 chr1 194861580 194862714 -87330950 - MER65A-int LTR ERV1 0 4871 3604 1999 209 114 28 chr1 194862879 194863627 -87330037 - MER4-int LTR ERV1 -938 4077 3078 1137 184 55 86 chr1 194863657 194864322 -87329342 - MER4-int LTR ERV1 -1913 4418 3741 12966 113 9 10 chr1 194864457 194867219 -87326445 + Harlequin LTR ERV1 300 2972 -5427 1190 133 5 0 chr1 194867218 194867406 -87326258 + Harlequin LTR ERV1 4756 4944 -3455 * 2148 183 101 70 chr1 194867407 194868281 -87325383 + Harlequin LTR ERV1 840 1740 -5156 * 5380 98 1 5 chr1 194868279 194869056 -87324608 + Harlequin LTR ERV1 7626 8399 0 5670 74 94 1 chr1 194869056 194869812 -87323852 + LTR12 LTR ERV1 1 826 0 638 164 27 49 chr1 194869820 194870003 -87323661 - MER65A-int LTR ERV1 -2887 3711 3533 2158 108 7 3 chr1 194870020 194870315 -87323349 - AluSx SINE Alu -16 296 1 1997 154 7 0 chr1 194870613 194870906 -87322758 + AluSx SINE Alu 1 295 -17 614 234 5 30 chr1 194870921 194871118 -87322546 - MER65A-int LTR ERV1 -6388 1732 1541 6897 201 79 61 chr1 194871232 194871870 -87321794 - MER65A-int LTR ERV1 -2383 2488 1863 7508 33 0 0 chr1 194871870 194873395 -87320269 - L1PA2 LINE L1 -1 6154 4630 9037 183 13 7 chr1 194873405 194876025 -87317639 - L1PA13 LINE L1 -3 6160 3520 6897 201 79 61 chr1 194876025 194877768 -87315896 - MER65A-int LTR ERV1 -3016 1855 53 2502 127 52 12 chr1 194877821 194878248 -87315416 - MER65A LTR ERV1 -1 444 1 853 235 92 4 chr1 194878249 194878509 -87315155 + MER21B LTR ERV1 529 811 -52 473 236 29 14 chr1 194878533 194878673 -87314991 - L1M4c LINE L1 -3346 3036 2895 2450 124 8 36 chr1 194878704 194879090 -87314574 - THE1C LTR MaLR 0 375 1 9118 129 60 24 chr1 194879090 194880614 -87313050 - THE1C-int LTR MaLR 0 1580 1 1939 109 17 20 chr1 194880614 194880916 -87312748 - THE1C LTR MaLR 0 375 75 229 191 29 29 chr1 194880916 194880984 -87312680 - L1M4 LINE L1 -5157 1227 1160 1725 236 30 2 chr1 194880997 194881497 -87312167 - L1M4c LINE L1 -4563 1821 1308 286 145 0 87 chr1 194881493 194881562 -87312102 + L1M4 LINE L1 1510 1572 -4970 * 279 0 0 0 chr1 194882143 194882174 -87311490 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1310 216 35 8 chr1 194882982 194883241 -87310423 + AluJo SINE Alu 1 266 -46 408 71 0 0 chr1 194884068 194884124 -87309540 + (TG)n Simple_repeat Simple_repeat 2 57 0 229 206 32 48 chr1 194885194 194885257 -87308407 - L2 LINE L2 -6 3307 3246 444 222 212 72 chr1 194885622 194885856 -87307808 + MIR SINE MIR 7 262 0 592 320 28 53 chr1 194886045 194886367 -87307297 + L2 LINE L2 2988 3301 -12 1328 264 97 44 chr1 194887500 194887699 -87305965 - HAL1 LINE L1 -1854 653 466 2405 91 0 0 chr1 194887699 194888007 -87305657 + AluY SINE Alu 1 308 -3 1328 264 97 44 chr1 194888007 194888416 -87305248 - HAL1 LINE L1 -2041 466 13 188 179 51 0 chr1 194889731 194889770 -87303894 + MER5A DNA MER1_type 98 138 -51 2280 148 25 49 chr1 194889996 194890441 -87303223 - Tigger2a DNA MER2_type 0 434 1 192 221 325 0 chr1 194891430 194891507 -87302157 + MIR3 SINE MIR 92 193 -15 753 341 115 57 chr1 194891943 194893342 -87300322 + L2 LINE L2 1798 3268 -4 413 337 101 38 chr1 194893593 194894089 -87299575 - L2 LINE L2 -460 2854 2328 348 145 72 0 chr1 194894451 194894520 -87299144 - MSTD LTR MaLR 0 396 323 7144 54 0 0 chr1 194894596 194895549 -87298115 - L1PA7 LINE L1 -1 6153 5197 1210 258 47 9 chr1 194895550 194895868 -87297796 - MSTD LTR MaLR -58 338 9 407 319 133 47 chr1 194895955 194896256 -87297408 + L1MB8 LINE L1 5258 5584 -537 21 36 0 0 chr1 194896787 194896815 -87296849 + AT_rich Low_complexity Low_complexity 1 28 0 719 249 144 22 chr1 194898117 194898346 -87295318 + MIR SINE MIR 6 262 0 584 209 184 6 chr1 194898954 194899112 -87294552 - MER5A DNA MER1_type 0 189 4 185 306 20 51 chr1 194899815 194899913 -87293751 - MIR SINE MIR 0 262 168 270 298 32 16 chr1 194899928 194900052 -87293612 - MLT1I LTR MaLR 0 409 284 1028 237 40 34 chr1 194900133 194900487 -87293177 - MER74B LTR ERVL -67 555 200 240 188 0 0 chr1 194900559 194900607 -87293057 - MER74B LTR ERVL -574 48 1 374 160 20 70 chr1 194900733 194900833 -87292831 - MLT1J2 LTR MaLR -355 95 1 367 306 27 0 chr1 194900833 194900944 -87292720 - MIR SINE MIR -107 155 42 2330 195 61 11 chr1 194902272 194902810 -87290854 + L1MB8 LINE L1 5612 6176 -2 401 308 83 13 chr1 194903300 194903456 -87290208 + MIR3 SINE MIR 20 186 -22 434 269 110 0 chr1 194904464 194904609 -87289055 - MIR3 SINE MIR -8 200 40 270 0 0 0 chr1 194904666 194904696 -87288968 + (TA)n Simple_repeat Simple_repeat 2 31 0 1098 268 98 48 chr1 194905027 194905088 -87288576 + MLT1H1 LTR MaLR 1 58 -497 1629 154 63 11 chr1 194905088 194905208 -87288456 + AluSx SINE Alu 1 113 -199 405 0 0 0 chr1 194905208 194905253 -87288411 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1629 154 63 11 chr1 194905253 194905417 -87288247 + AluSx SINE Alu 113 300 -12 1098 268 98 48 chr1 194905417 194905878 -87287786 + MLT1H1 LTR MaLR 58 549 -6 253 208 19 0 chr1 194905884 194905937 -87287727 + MIR SINE MIR 171 224 -38 224 122 24 0 chr1 194905974 194906015 -87287649 + CT-rich Low_complexity Low_complexity 1 42 0 180 0 0 0 chr1 194906068 194906088 -87287576 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2466 58 6 16 chr1 194906095 194906407 -87287257 - AluY SINE Alu -2 309 1 755 245 177 23 chr1 194906655 194907320 -87286344 - L2 LINE L2 0 3313 2544 636 297 84 8 chr1 194907351 194907590 -87286074 + MIR SINE MIR 6 262 0 184 273 0 0 chr1 194907599 194907654 -87286010 - L2 LINE L2 -800 2514 2460 210 37 0 0 chr1 194907729 194907756 -87285908 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1799 141 3 28 chr1 194908357 194908647 -87285017 - AluSx SINE Alu -13 299 17 468 222 5 9 chr1 194910110 194910253 -87283411 + GA-rich Low_complexity Low_complexity 1 142 0 189 0 0 0 chr1 194911269 194911290 -87282374 + (T)n Simple_repeat Simple_repeat 1 21 0 235 328 83 28 chr1 194911391 194911571 -87282093 + MIR SINE MIR 23 212 -50 293 289 53 0 chr1 194911666 194911742 -87281922 - L2 LINE L2 0 3272 3193 582 159 49 13 chr1 194911753 194911933 -87281731 + MER1B DNA MER1_type 1 220 -77 196 338 117 13 chr1 194911940 194912017 -87281647 - L2 LINE L2 -60 3212 3128 532 276 43 37 chr1 194912575 194912738 -87280926 - MIR SINE MIR -22 186 21 724 181 42 0 chr1 194912791 194912935 -87280729 - MER5A DNA MER1_type -7 182 33 11801 94 51 26 chr1 194912944 194915179 -87278485 - LTR19-int LTR ERV1 -1121 4465 1738 889 167 204 41 chr1 194915179 194915400 -87278264 + LTR8 LTR ERV1 1 257 -434 3729 45 16 2 chr1 194915400 194915891 -87277773 - PABL_A-int LTR ERV1 -3366 1649 1152 * 6055 99 8 42 chr1 194915872 194916808 -87276856 - PABL_A-int LTR ERV1 -4111 904 1 4904 55 43 3 chr1 194916811 194917442 -87276222 - PABL_A LTR ERV1 -3 657 2 8348 92 6 4 chr1 194917753 194919743 -87273921 - L1PA8 LINE L1 0 6487 4505 8365 144 15 25 chr1 194919750 194921715 -87271949 - L1PA8 LINE L1 -4094 2367 412 1751 245 47 130 chr1 194921952 194922900 -87270764 - L2 LINE L2 -261 3052 2181 583 257 28 28 chr1 194922975 194923193 -87270471 + MER112 DNA MER1_type 41 258 -2 272 232 152 48 chr1 194923194 194923319 -87270345 - L2 LINE L2 -1137 2177 2040 25 108 0 0 chr1 194924114 194924216 -87269448 + AT_rich Low_complexity Low_complexity 1 102 0 2444 70 0 7 chr1 194924322 194924624 -87269040 + AluY SINE Alu 1 300 -11 740 232 39 17 chr1 194924873 194925054 -87268610 + MER58A DNA MER1_type 26 210 -14 2342 214 85 16 chr1 194925054 194926166 -87267498 + L1MDa LINE L1 2022 3243 -3297 2306 68 7 29 chr1 194926166 194926473 -87267191 + AluY SINE Alu 1 300 -11 2342 214 85 16 chr1 194926473 194926714 -87266950 + L1MDa LINE L1 3243 3466 -3074 2045 158 132 7 chr1 194926732 194927142 -87266522 + MLT1D LTR MaLR 45 505 0 2246 234 38 12 chr1 194927142 194927718 -87265946 + MLT1D-int LTR MaLR 1 591 -780 839 185 0 2 chr1 194927718 194927889 -87265775 + MLT2B3 LTR ERVL 2 170 -350 384 227 102 8 chr1 194927910 194928038 -87265626 + MLT2B3 LTR ERVL 395 534 -20 377 92 0 25 chr1 194928082 194928151 -87265513 + MLT2B3 LTR ERVL 393 554 0 315 164 0 18 chr1 194928204 194928259 -87265405 + MLT1D-int LTR MaLR 607 660 -711 608 256 54 59 chr1 194928307 194928510 -87265154 + MLT1D-int LTR MaLR 661 862 -509 229 154 0 0 chr1 194928684 194928723 -87264941 + MLT1D-int LTR MaLR 982 1020 -351 32 26 0 0 chr1 194929169 194929208 -87264456 + AT_rich Low_complexity Low_complexity 1 39 0 360 345 92 65 chr1 194929753 194930054 -87263610 + L2 LINE L2 184 475 -2839 931 181 105 6 chr1 194930054 194930225 -87263439 + MER5A DNA MER1_type 2 189 0 360 345 92 65 chr1 194930225 194930813 -87262851 + L2 LINE L2 475 1097 -2217 595 320 98 30 chr1 194931129 194931495 -87262169 + L2 LINE L2 2031 2421 -893 29 0 0 0 chr1 194932519 194932548 -87261116 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr1 194932941 194932963 -87260701 + (T)n Simple_repeat Simple_repeat 1 22 0 409 83 56 0 chr1 194933353 194933425 -87260239 + L1MA8 LINE L1 6209 6284 -7 262 302 28 9 chr1 194933738 194933844 -87259820 + MIR SINE MIR 118 225 -37 3515 232 33 23 chr1 194934089 194935863 -87257801 + L1MC3 LINE L1 4479 5403 -743 1080 238 63 20 chr1 194935848 194936147 -87257517 + L1MD3 LINE L1 7676 7987 -8 * 615 207 43 0 chr1 194936218 194936358 -87257306 + L1MD3 LINE L1 7029 7174 -821 1816 266 105 57 chr1 194936997 194937116 -87256548 - L1MC4 LINE L1 -166 7876 7764 2286 103 7 0 chr1 194937116 194937418 -87256246 - AluSq SINE Alu -9 304 1 1816 266 105 57 chr1 194937418 194938312 -87255352 - L1MC4 LINE L1 -278 7764 6915 1725 169 3 17 chr1 194938312 194938602 -87255062 - AluJb SINE Alu -26 286 1 1816 266 105 57 chr1 194938602 194938797 -87254867 - L1MC4 LINE L1 -1127 6915 6601 429 66 0 0 chr1 194938797 194938858 -87254806 + (TA)n Simple_repeat Simple_repeat 2 62 0 1816 266 105 57 chr1 194938858 194938911 -87254753 - L1MC4 LINE L1 -1441 6601 6552 935 59 0 0 chr1 194939784 194939903 -87253761 - L1PA5 LINE L1 -5 6149 6031 21 71 0 0 chr1 194941052 194941094 -87252570 + AT_rich Low_complexity Low_complexity 1 42 0 4627 179 59 11 chr1 194941180 194942152 -87251512 - L1MA10 LINE L1 0 6334 5317 * 9151 189 23 12 chr1 194942147 194942998 -87250666 - L1PA16 LINE L1 -1 6165 5325 285 29 0 0 chr1 194942998 194943032 -87250632 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 8999 25 0 1 chr1 194943033 194944864 -87248800 - L1PA4 LINE L1 -8 6147 4318 9151 189 23 12 chr1 194944864 194946978 -87246686 - L1PA16 LINE L1 -840 5326 3178 238 223 16 74 chr1 194946980 194947101 -87246563 - L1MA10 LINE L1 -813 5333 5220 317 265 19 80 chr1 194947244 194947406 -87246258 - L2 LINE L2 -4 3309 3158 276 314 107 18 chr1 194947560 194947729 -87245935 - L2 LINE L2 -421 2893 2710 310 330 173 42 chr1 194947801 194947992 -87245672 - L2 LINE L2 0 3272 3057 * 320 284 55 9 chr1 194947958 194948067 -87245597 - MIR SINE MIR -136 126 13 534 308 27 62 chr1 194948310 194948716 -87244948 - L2 LINE L2 -1 3312 2921 937 240 24 61 chr1 194951653 194951949 -87241715 - L1M4b LINE L1 -6535 324 40 21 0 0 0 chr1 194951975 194951996 -87241668 + AT_rich Low_complexity Low_complexity 1 21 0 445 313 62 11 chr1 194952333 194952509 -87241155 + MIR SINE MIR 40 224 -38 1207 283 97 33 chr1 194952627 194953203 -87240461 - MLT1L LTR MaLR -2 613 1 1293 135 68 5 chr1 194953303 194953525 -87240139 - MSTB LTR MaLR -4 422 187 8214 192 32 5 chr1 194953526 194955076 -87238588 - MSTB-int LTR MaLR -58 1593 2 2091 170 78 12 chr1 194955077 194955477 -87238187 - MSTB LTR MaLR 0 426 1 2409 76 0 10 chr1 194956411 194956725 -87236939 + AluY SINE Alu 1 311 0 974 244 48 0 chr1 194956844 194957073 -87236591 - MIR SINE MIR 0 262 23 25 0 0 0 chr1 194957150 194957175 -87236489 + AT_rich Low_complexity Low_complexity 1 25 0 453 321 24 12 chr1 194957415 194957583 -87236081 - MIR3 SINE MIR -6 202 33 386 279 147 84 chr1 194957681 194957871 -87235793 + MIR SINE MIR 48 249 -13 859 289 129 11 chr1 194958053 194958417 -87235247 + LTR16C LTR ERVL 83 489 -2 26 30 0 0 chr1 194959429 194959462 -87234202 + AT_rich Low_complexity Low_complexity 1 33 0 186 143 0 0 chr1 194960396 194960431 -87233233 + (GA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr1 194960983 194961012 -87232652 + AT_rich Low_complexity Low_complexity 1 29 0 497 214 23 38 chr1 194961184 194961315 -87232349 + MLT1H LTR MaLR 5 133 -416 253 260 14 151 chr1 194962528 194962636 -87231028 + L2 LINE L2 749 834 -2480 1848 112 14 0 chr1 194962636 194962930 -87230734 - L1MA3 LINE L1 0 6305 6008 253 260 14 151 chr1 194962930 194962967 -87230697 + L2 LINE L2 834 874 -2440 978 114 0 0 chr1 194963045 194963176 -87230488 - AluSc SINE Alu -178 131 1 207 341 71 55 chr1 194963389 194963644 -87230020 + L2 LINE L2 1233 1491 -1823 196 313 151 45 chr1 194964661 194964926 -87228738 + L2 LINE L2 620 912 -2402 194 0 39 0 chr1 194965291 194965317 -87228347 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1647 101 7 101 chr1 194965319 194965486 -87228178 - AluSp SINE Alu -20 293 161 312 27 0 0 chr1 194965486 194965523 -87228141 + (TA)n Simple_repeat Simple_repeat 2 38 0 1647 101 7 101 chr1 194965523 194965633 -87228031 - AluSp SINE Alu -152 161 42 221 298 122 62 chr1 194970111 194970480 -87223184 + L2 LINE L2 2921 3311 -2 272 269 0 93 chr1 194970835 194970943 -87222721 - LTR16A1 LTR ERVL -89 368 271 3460 96 17 11 chr1 194973087 194973607 -87220057 - L1PA13 LINE L1 -1 6162 5640 3506 130 26 6 chr1 194973609 194974597 -87219067 + L1P4 LINE L1 4678 5683 -478 248 217 0 87 chr1 194975959 194976051 -87217613 - L1P LINE L1 -1155 4991 4908 219 328 0 0 chr1 194976211 194976272 -87217392 - L2 LINE L2 -18 3295 3235 322 343 57 51 chr1 194976346 194976597 -87217067 - L1 LINE L1 -1478 4668 4420 444 146 0 100 chr1 194976597 194976707 -87216957 - L1PA11 LINE L1 0 6174 6076 322 343 57 51 chr1 194976707 194976965 -87216699 - L1 LINE L1 -1726 4420 4156 258 290 86 0 chr1 194977043 194977136 -87216528 + MIR3 SINE MIR 73 173 -35 1855 174 0 23 chr1 194977281 194977586 -87216078 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr1 194977738 194977759 -87215905 + AT_rich Low_complexity Low_complexity 1 21 0 2294 187 10 49 chr1 194978287 194978854 -87214810 - LTR27 LTR ERV1 -137 499 1 200 246 0 66 chr1 194980724 194980785 -87212879 + MER5B DNA MER1_type 19 75 -103 * 225 270 34 79 chr1 194980740 194980829 -87212835 - MER5A DNA MER1_type -31 158 74 313 305 85 40 chr1 194980939 194981116 -87212548 - L3 LINE CR1 -137 1440 1256 384 300 68 65 chr1 194981738 194982075 -87211589 + MARNA DNA Mariner 71 408 -178 276 130 0 0 chr1 194982869 194982915 -87210749 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr1 194983050 194983071 -87210593 + AT_rich Low_complexity Low_complexity 1 21 0 369 297 115 26 chr1 194984090 194984282 -87209382 + L2 LINE L2 3104 3312 -1 2297 304 138 24 chr1 194984541 194985816 -87207848 + L2 LINE L2 157 1576 -1738 270 294 80 37 chr1 194986231 194986418 -87207246 - L2 LINE L2 0 3313 3119 220 360 136 22 chr1 194986457 194986685 -87206979 - L2 LINE L2 -376 2938 2685 544 65 0 0 chr1 194987351 194987428 -87206236 - L1PA3 LINE L1 0 6155 6079 6674 29 1 0 chr1 194987428 194988560 -87205104 + L1PA4 LINE L1 4942 6074 -81 590 291 44 11 chr1 194988883 194989065 -87204599 - MIR SINE MIR -21 241 54 310 204 10 31 chr1 194989497 194989595 -87204069 - Charlie2 DNA MER1_type -351 2511 2416 624 172 26 0 chr1 194989685 194989801 -87203863 - Tigger1 DNA MER2_type 0 2418 2300 360 157 405 0 chr1 194989803 194989892 -87203772 + FLAM_A SINE Alu 1 125 -8 * 13278 132 35 3 chr1 194989889 194992129 -87201535 - Tigger1 DNA MER2_type -106 2312 1 1152 246 45 16 chr1 194992149 194992531 -87201133 - Charlie2 DNA MER1_type -614 2248 1856 564 208 49 14 chr1 194992535 194992679 -87200985 - Charlie2 DNA MER1_type -2459 323 175 330 300 27 0 chr1 194992773 194992883 -87200781 - Charlie2 DNA MER1_type -2749 113 1 974 272 58 4 chr1 194993110 194993353 -87200311 - MIR SINE MIR 0 262 7 1012 330 97 37 chr1 194994639 194994798 -87198866 + L3 LINE CR1 927 1075 -502 2274 102 0 0 chr1 194994798 194995091 -87198573 - AluSx SINE Alu -19 293 1 1012 330 97 37 chr1 194995091 194995527 -87198137 + L3 LINE CR1 1075 1558 -19 3840 95 26 0 chr1 194995900 194996166 -87197498 + L1PB1 LINE L1 5513 5771 -380 360 0 0 0 chr1 194996166 194996206 -87197458 + (CA)n Simple_repeat Simple_repeat 2 41 0 3840 95 26 0 chr1 194996206 194996519 -87197145 + L1PB1 LINE L1 5771 6107 -44 27 49 0 0 chr1 194996677 194996718 -87196946 + AT_rich Low_complexity Low_complexity 1 41 0 787 282 80 68 chr1 194996764 194996918 -87196746 - L2 LINE L2 -4 3309 3158 342 0 0 0 chr1 194996918 194996956 -87196708 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 787 282 80 68 chr1 194996956 194997492 -87196172 - L2 LINE L2 -155 3158 2617 812 190 103 17 chr1 194998072 194998246 -87195418 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr1 194998771 194998799 -87194865 + AT_rich Low_complexity Low_complexity 1 28 0 2117 81 27 14 chr1 194998919 194999214 -87194450 + AluY SINE Alu 1 299 -12 2333 181 35 29 chr1 195000424 195000975 -87192689 - L1MB7 LINE L1 -30 6154 5601 262 234 62 0 chr1 195001431 195001495 -87192169 + (CATG)n Simple_repeat Simple_repeat 3 70 0 906 217 23 20 chr1 195001496 195001907 -87191757 - MLT2B1 LTR ERVL -42 422 1 1818 138 22 0 chr1 195002389 195002700 -87190964 + L1MA8 LINE L1 5963 6280 -11 22 0 0 0 chr1 195002864 195002886 -87190778 + AT_rich Low_complexity Low_complexity 1 22 0 1903 148 3 24 chr1 195002886 195003184 -87190480 - AluSx SINE Alu -20 292 1 358 307 106 21 chr1 195003188 195003377 -87190287 - MIR SINE MIR -56 206 2 202 327 58 0 chr1 195003584 195003688 -87189976 + MIR SINE MIR 97 206 -56 1250 254 109 5 chr1 195004817 195005231 -87188433 - LTR16A1 LTR ERVL 0 457 1 231 88 0 0 chr1 195005271 195005305 -87188359 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 386 280 97 11 chr1 195005772 195005947 -87187717 - Charlie8 DNA MER1_type -2182 235 46 232 400 82 0 chr1 195005994 195006129 -87187535 + L2 LINE L2 3124 3269 -3 1868 145 38 0 chr1 195006291 195006581 -87187083 + AluJb SINE Alu 9 309 -3 306 50 0 0 chr1 195007596 195007636 -87186028 + (AGATG)n Simple_repeat Simple_repeat 3 42 0 2779 257 157 33 chr1 195007754 195008002 -87185662 + Charlie8 DNA MER1_type 455 671 -1746 1373 213 29 47 chr1 195008002 195008383 -87185281 - MLT1A2 LTR MaLR 0 374 1 2779 257 157 33 chr1 195008383 195008596 -87185068 + Charlie8 DNA MER1_type 671 856 -1561 1982 124 66 30 chr1 195008596 195008958 -87184706 + THE1C LTR MaLR 1 375 0 2779 257 157 33 chr1 195008958 195009966 -87183698 + Charlie8 DNA MER1_type 856 2108 -309 189 107 0 0 chr1 195011717 195011745 -87181919 + (CCTA)n Simple_repeat Simple_repeat 4 31 0 290 0 0 70 chr1 195012603 195012646 -87181018 + (TC)n Simple_repeat Simple_repeat 2 41 0 215 324 15 0 chr1 195014324 195014392 -87179272 + MIR3 SINE MIR 91 159 -49 185 118 59 0 chr1 195014600 195014634 -87179030 + MIR3 SINE MIR 162 197 -11 2522 63 0 0 chr1 195015554 195015857 -87177807 + AluY SINE Alu 1 303 -8 494 258 32 0 chr1 195016328 195016452 -87177212 - MLT1G1 LTR MaLR -17 578 451 2339 248 69 65 chr1 195016503 195017303 -87176361 + MER21B LTR ERV1 1 803 -60 748 235 88 26 chr1 195017345 195017667 -87175997 - MLT1G1 LTR MaLR -210 385 1 1404 324 40 0 chr1 195017698 195018145 -87175519 - L2 LINE L2 -2787 527 63 819 301 84 38 chr1 195018243 195018825 -87174839 + L1ME3A LINE L1 5258 5866 -304 747 247 118 0 chr1 195018888 195019074 -87174590 + MIR SINE MIR 55 262 0 442 309 62 37 chr1 195020563 195020725 -87172939 - MIR SINE MIR -89 173 8 2090 158 17 3 chr1 195021294 195021654 -87172010 + MLT1A1 LTR MaLR 1 365 0 286 367 129 16 chr1 195021729 195022108 -87171556 - L2 LINE L2 -473 2841 2420 265 322 43 9 chr1 195022524 195022639 -87171025 - L2 LINE L2 -1085 2229 2111 184 308 33 44 chr1 195022727 195022818 -87170846 - L2 LINE L2 -1416 1898 1809 409 296 67 69 chr1 195022848 195023209 -87170455 - L2 LINE L2 -1619 1695 1336 1066 162 0 6 chr1 195023215 195023382 -87170282 + FRAM SINE Alu 1 162 -14 184 269 0 0 chr1 195024133 195024185 -87169479 + MER5C DNA MER1_type 262 313 -11 2198 104 0 36 chr1 195024267 195024574 -87169090 - AluSx SINE Alu -16 296 1 6333 77 10 10 chr1 195026608 195028315 -87165349 - L1PA8 LINE L1 -4 6168 4447 333 129 16 0 chr1 195028641 195028703 -87164961 + L1MB4 LINE L1 6115 6177 -3 5837 98 9 7 chr1 195028856 195029751 -87163913 + L1PA11 LINE L1 5278 6174 0 595 312 55 0 chr1 195030452 195030651 -87163013 + MIR SINE MIR 49 258 -4 681 242 20 131 chr1 195031028 195031301 -87162363 + L2 LINE L2 3001 3228 -85 2485 69 0 0 chr1 195031301 195031607 -87162057 - AluY SINE Alu -5 306 1 681 242 20 131 chr1 195031607 195031684 -87161980 + L2 LINE L2 3228 3312 -1 214 213 0 33 chr1 195031685 195031746 -87161918 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 225 0 0 0 chr1 195032014 195032039 -87161625 + (A)n Simple_repeat Simple_repeat 1 25 0 210 316 112 10 chr1 195033206 195033304 -87160360 + L2 LINE L2 2929 3036 -236 277 302 44 127 chr1 195033399 195033651 -87160013 - L2 LINE L2 -19 3253 3023 208 302 19 0 chr1 195033656 195033709 -87159955 + L2 LINE L2 3133 3186 -86 189 0 0 0 chr1 195033818 195033839 -87159825 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 307 272 33 78 chr1 195034133 195034313 -87159351 + L1MC4 LINE L1 7694 7865 -177 28 29 0 0 chr1 195034340 195034375 -87159289 + AT_rich Low_complexity Low_complexity 1 35 0 323 341 85 29 chr1 195036386 195036644 -87157020 - HAL1b LINE L1 -772 645 435 306 106 0 0 chr1 195037181 195037228 -87156436 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 543 315 29 51 chr1 195037424 195037813 -87155851 - L2 LINE L2 -189 3083 2704 206 260 14 82 chr1 195038195 195038268 -87155396 + MER5A DNA MER1_type 91 158 -31 * 225 250 19 0 chr1 195038220 195038272 -87155392 - MER5A DNA MER1_type -98 91 39 2208 66 0 50 chr1 195039383 195039714 -87153950 + AluY SINE Alu 1 316 0 212 321 0 0 chr1 195039952 195040005 -87153659 + MIR3 SINE MIR 144 196 -12 29 0 0 0 chr1 195040083 195040112 -87153552 + AT_rich Low_complexity Low_complexity 1 29 0 2579 84 0 67 chr1 195040119 195040536 -87153128 - L1PA8 LINE L1 -1 6171 5783 1421 205 75 117 chr1 195040540 195041154 -87152510 - L1ME3 LINE L1 -13 6149 5562 648 299 15 42 chr1 195041264 195041528 -87152136 + L2 LINE L2 3057 3313 0 279 0 0 0 chr1 195042106 195042137 -87151527 + (A)n Simple_repeat Simple_repeat 1 31 0 234 250 17 17 chr1 195042730 195042790 -87150874 + L2 LINE L2 3212 3271 -1 2026 166 31 0 chr1 195043787 195044142 -87149522 + MLT2D LTR ERVL 1 366 -48 236 128 0 21 chr1 195044142 195044189 -87149475 + (TC)n Simple_repeat Simple_repeat 2 47 0 257 57 0 186 chr1 195044190 195044260 -87149404 + MLT2C1 LTR ERVL 350 397 0 325 238 222 0 chr1 195044533 195044659 -87149005 - MIR SINE MIR -17 245 92 268 295 36 48 chr1 195044887 195045053 -87148611 + L2 LINE L2 2240 2403 -911 188 363 44 0 chr1 195045059 195045150 -87148514 + L2 LINE L2 2539 2633 -681 877 198 0 34 chr1 195045152 195045329 -87148335 - MER2 DNA MER2_type -174 171 1 285 181 43 35 chr1 195045338 195045497 -87148167 + (TTATA)n Simple_repeat Simple_repeat 1 160 0 517 272 69 25 chr1 195046024 195046395 -87147269 - L1ME LINE L1 -506 5658 5265 24 32 0 0 chr1 195046604 195046635 -87147029 + AT_rich Low_complexity Low_complexity 1 31 0 40570 35 22 2 chr1 195046671 195052698 -87140966 - L1PA2 LINE L1 -4 6151 2 7534 23 0 0 chr1 195052725 195053642 -87140022 - L1P LINE L1 -1512 4634 3718 7744 21 0 0 chr1 195053642 195055196 -87138468 + L1PA3 LINE L1 4596 6154 -1 180 0 0 0 chr1 195055203 195055223 -87138441 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 405 367 60 6 chr1 195055223 195055495 -87138169 - L1ME LINE L1 -1053 5093 4809 342 276 0 0 chr1 195055646 195055762 -87137902 - L1ME LINE L1 -1544 4602 4487 364 383 6 0 chr1 195056019 195056181 -87137483 - L1ME LINE L1 -1947 4199 4037 579 192 24 0 chr1 195056845 195056970 -87136694 + MER67D LTR ERV1 7 134 -380 992 131 17 17 chr1 195057142 195057317 -87136347 + MER67C LTR ERV1 229 403 -307 663 214 121 10 chr1 195057295 195057501 -87136163 + MER67D LTR ERV1 282 510 -4 * 225 0 0 0 chr1 195057934 195057959 -87135705 + (A)n Simple_repeat Simple_repeat 1 25 0 249 365 9 28 chr1 195058248 195058355 -87135309 + L2 LINE L2 3203 3307 -6 196 394 24 16 chr1 195060564 195060691 -87132973 + L2 LINE L2 2842 2969 -303 2146 122 44 39 chr1 195061125 195061487 -87132177 + THE1B LTR MaLR 1 364 0 11822 89 6 9 chr1 195061487 195063072 -87130592 + THE1B-int LTR MaLR 1 1580 0 2013 126 40 67 chr1 195063072 195063444 -87130220 + THE1B LTR MaLR 1 362 -2 10390 187 44 6 chr1 195065202 195068074 -87125590 - L1 LINE L1 -1090 6475 3257 1933 145 52 0 chr1 195068074 195068363 -87125301 - AluSx SINE Alu -6 306 3 10390 187 44 6 chr1 195068363 195068623 -87125041 - L1 LINE L1 -4308 3257 3008 707 192 0 0 chr1 195068624 195068744 -87124920 + AluSq/x SINE Alu 1 120 -193 638 144 9 18 chr1 195068742 195068853 -87124811 + AluJb SINE Alu 199 308 -4 * 3692 105 53 13 chr1 195068854 195069480 -87124184 - L1 LINE L1 -4547 3018 2368 3577 195 88 54 chr1 195069465 195070821 -87122843 - L1 LINE L1 -5430 2135 23 * 9279 207 49 32 chr1 195070830 195073949 -87119715 - L1 LINE L1 -1832 5733 2542 1736 227 18 10 chr1 195073927 195074519 -87119145 - L1M3c LINE L1 -4681 2356 1749 * 610 312 158 0 chr1 195074751 195074972 -87118692 + MIR SINE MIR 3 258 -4 1809 181 0 19 chr1 195075930 195076244 -87117420 + AluJb SINE Alu 1 308 -4 242 309 9 64 chr1 195076521 195076631 -87117033 - MIR SINE MIR -50 212 109 389 356 37 32 chr1 195076827 195077165 -87116499 - L2 LINE L2 -194 3078 2742 1045 238 120 50 chr1 195078140 195078293 -87115371 + MLT1A1 LTR MaLR 1 142 -223 738 159 7 43 chr1 195078293 195078431 -87115233 + FLAM_C SINE Alu 1 133 0 1045 238 120 50 chr1 195078431 195078618 -87115046 + MLT1A1 LTR MaLR 142 365 0 1737 227 52 0 chr1 195078662 195079027 -87114637 + MLT1A1-int LTR MaLR 27 410 -1325 1463 254 43 2 chr1 195079028 195079411 -87114253 + MLT1A1-int LTR MaLR 1217 1651 0 837 237 99 6 chr1 195079411 195079718 -87113946 + MSTD LTR MaLR 1 395 -1 568 335 120 22 chr1 195080167 195080525 -87113139 + L3 LINE CR1 692 1084 -493 419 292 50 17 chr1 195080556 195080757 -87112907 - MIR SINE MIR -11 251 43 344 280 40 24 chr1 195080784 195080909 -87112755 + L3 LINE CR1 1200 1326 -251 246 299 13 13 chr1 195081445 195081522 -87112142 + MIR SINE MIR 20 96 -112 244 324 28 48 chr1 195081575 195081720 -87111944 + MIR SINE MIR 12 153 -109 196 365 16 0 chr1 195082338 195082392 -87111272 - L2 LINE L2 -86 3186 3129 2394 92 0 0 chr1 195082392 195082698 -87110966 + AluSq SINE Alu 1 306 -7 707 286 129 0 chr1 195083096 195083313 -87110351 + MIR SINE MIR 15 259 -3 247 200 0 0 chr1 195084612 195084657 -87109007 + MIR SINE MIR 103 147 -115 211 325 87 40 chr1 195084715 195084841 -87108823 + L2 LINE L2 3136 3267 -5 2453 63 0 20 chr1 195085217 195085520 -87108144 - AluY SINE Alu -14 297 1 653 307 26 4 chr1 195085521 195085749 -87107915 - MIR SINE MIR -16 246 14 524 295 113 68 chr1 195086309 195087071 -87106593 + L2 LINE L2 1710 2505 -809 2655 172 84 27 chr1 195087236 195087280 -87106384 - MLT2B3 LTR ERVL 0 554 514 533 15 15 0 chr1 195087280 195087346 -87106318 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 2655 172 84 27 chr1 195087346 195087825 -87105839 - MLT2B3 LTR ERVL -40 514 1 11106 150 75 29 chr1 195087825 195088523 -87105141 - ERVL-B3 LTR ERVL -7 5757 5092 2353 91 0 22 chr1 195088523 195088841 -87104823 - AluY SINE Alu 0 311 1 11106 150 75 29 chr1 195088841 195090156 -87103508 - ERVL-B3 LTR ERVL -672 5092 3653 578 146 0 10 chr1 195090157 195090253 -87103411 - MLT2B1 LTR ERVL -425 95 1 2239 144 5 24 chr1 195090593 195090611 -87103053 - L1PA15 LINE L1 0 6165 6148 2439 125 94 3 chr1 195090611 195091003 -87102661 - MSTA LTR MaLR 0 428 1 2239 144 5 24 chr1 195091003 195091365 -87102299 - L1PA15 LINE L1 -17 6148 5792 9764 192 24 20 chr1 195091370 195092870 -87100794 - L1PA15 LINE L1 -600 5565 4064 2086 148 21 32 chr1 195092870 195093249 -87100415 + THE1C LTR MaLR 1 375 0 9764 192 24 20 chr1 195093249 195094159 -87099505 - L1PA15 LINE L1 -2101 4064 3159 443 118 13 0 chr1 195094179 195094255 -87099409 + (TA)n Simple_repeat Simple_repeat 1 77 0 307 268 78 49 chr1 195094300 195094442 -87099222 - L2 LINE L2 -1 3312 3167 21 0 0 0 chr1 195094588 195094609 -87099055 + AT_rich Low_complexity Low_complexity 1 21 0 209 265 145 12 chr1 195094611 195094694 -87098970 - L2 LINE L2 0 3313 3220 * 259 330 0 29 chr1 195094691 195094794 -87098870 - MIR SINE MIR -133 129 30 * 949 268 173 22 chr1 195094792 195095162 -87098502 - L2 LINE L2 -664 2650 2225 343 339 20 51 chr1 195095467 195095662 -87098002 - MER5A DNA MER1_type 0 189 1 29857 105 7 17 chr1 195095668 195098214 -87095450 + L1PA7 LINE L1 769 3340 -2814 2199 102 3 3 chr1 195098214 195098508 -87095156 + AluY SINE Alu 1 294 -17 29857 105 7 17 chr1 195098508 195101281 -87092383 + L1PA7 LINE L1 3340 6030 -124 23 33 0 0 chr1 195102324 195102354 -87091310 + AT_rich Low_complexity Low_complexity 1 30 0 1927 110 4 4 chr1 195102438 195102710 -87090954 - AluSc SINE Alu -5 304 33 1863 136 46 0 chr1 195103234 195103514 -87090150 + AluSx SINE Alu 4 296 -16 470 126 232 0 chr1 195104875 195104970 -87088694 + MER63 DNA MER1_type 1 743 -319 328 316 0 0 chr1 195104963 195105058 -87088606 + MER63 DNA MER1_type 963 1057 -5 * 333 118 0 0 chr1 195105107 195105158 -87088506 + (CA)n Simple_repeat Simple_repeat 2 52 0 766 301 35 21 chr1 195107516 195107798 -87085866 + L2 LINE L2 3026 3311 -2 271 347 8 33 chr1 195109118 195109239 -87084425 + L2 LINE L2 3195 3312 -1 491 283 75 16 chr1 195109700 195109887 -87083777 + Charlie7 DNA MER1_type 27 224 -2388 570 269 42 10 chr1 195109933 195110126 -87083538 + Charlie7 DNA MER1_type 1428 1626 -986 4606 267 103 24 chr1 195110128 195111025 -87082639 - L2 LINE L2 -616 2698 1874 261 0 0 0 chr1 195111025 195111054 -87082610 + (TTG)n Simple_repeat Simple_repeat 2 30 0 4606 267 103 24 chr1 195111054 195111732 -87081932 - L2 LINE L2 -1440 1874 997 614 264 83 55 chr1 195111736 195112229 -87081435 + Charlie7 DNA MER1_type 2105 2611 -1 1877 155 0 10 chr1 195112265 195112587 -87081077 - AluJb SINE Alu 0 312 1 407 197 109 82 chr1 195112678 195112825 -87080839 + MIR SINE MIR 109 259 -3 551 273 150 9 chr1 195113376 195113596 -87080068 - MIR SINE MIR -2 260 10 452 300 37 63 chr1 195115503 195115693 -87077971 - MIR3 SINE MIR -10 198 14 400 158 0 0 chr1 195116804 195116880 -87076784 + L1MA9 LINE L1 6237 6312 0 475 262 36 42 chr1 195117220 195117388 -87076276 + MIR SINE MIR 25 191 -71 205 343 38 38 chr1 195117634 195117739 -87075925 - MIR3 SINE MIR -54 154 50 1708 61 5 5 chr1 195118668 195118880 -87074784 + AluSc SINE Alu 87 298 -11 227 211 14 42 chr1 195120053 195120124 -87073540 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 411 21 0 0 chr1 195120535 195120583 -87073081 + (TG)n Simple_repeat Simple_repeat 1 48 0 207 330 125 0 chr1 195121274 195121362 -87072302 - L2 LINE L2 -5 3267 3169 198 103 0 0 chr1 195121616 195121645 -87072019 + (TATG)n Simple_repeat Simple_repeat 4 32 0 180 200 53 93 chr1 195122216 195122291 -87071373 + L2 LINE L2 789 860 -2454 580 293 74 44 chr1 195122339 195122568 -87071096 - MIR SINE MIR -6 256 21 210 356 23 23 chr1 195123769 195123856 -87069808 + MIR SINE MIR 17 103 -105 303 28 0 0 chr1 195124069 195124105 -87069559 + (CA)n Simple_repeat Simple_repeat 1 36 0 182 277 169 12 chr1 195124271 195124354 -87069310 - MIR3 SINE MIR -2 206 111 23 78 0 0 chr1 195124811 195124862 -87068802 + AT_rich Low_complexity Low_complexity 1 51 0 1114 225 68 47 chr1 195125192 195125695 -87067969 - MLT1E2 LTR MaLR 0 505 3 247 284 90 8 chr1 195126273 195126407 -87067257 - L1ME4a LINE L1 -195 5926 5782 435 68 0 0 chr1 195127270 195127329 -87066335 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 190 229 250 31 chr1 195128147 195128243 -87065421 + L2 LINE L2 3197 3313 0 22 35 0 0 chr1 195128279 195128308 -87065356 + AT_rich Low_complexity Low_complexity 1 29 0 319 369 65 9 chr1 195129033 195129250 -87064414 + L2 LINE L2 1915 2143 -1171 417 298 60 89 chr1 195129288 195129657 -87064007 + L1MA9 LINE L1 1599 1956 -5530 2999 197 113 100 chr1 195129860 195130824 -87062840 + L1M4c LINE L1 562 1604 -4780 5907 105 10 8 chr1 195130824 195132402 -87061262 + L1PA14 LINE L1 4579 6160 -1 2999 197 113 100 chr1 195132402 195133063 -87060601 + L1M4c LINE L1 1604 2255 -4129 314 242 67 58 chr1 195133453 195133573 -87060091 + LTR45B LTR ERV1 351 471 -18 2271 229 25 8 chr1 195133585 195134349 -87059315 + L1MA9 LINE L1 3403 4179 -3386 30693 37 4 2 chr1 195134498 195139029 -87054635 - L1PA4 LINE L1 0 6155 1616 782 176 22 45 chr1 195139083 195139343 -87054321 + L1MA9 LINE L1 4268 6283 -1282 19522 68 1 0 chr1 195139343 195141840 -87051824 + L1P LINE L1 3 2501 -3645 2299 66 0 28 chr1 195141840 195142150 -87051514 + L1PA4 LINE L1 5846 6155 0 616 215 76 6 chr1 195142177 195142349 -87051315 + L1MA9 LINE L1 6304 6487 -1078 1520 285 11 0 chr1 195142352 195142699 -87050965 + L1PA15 LINE L1 1 351 -6436 681 297 41 15 chr1 195142697 195142892 -87050772 + L1PA13 LINE L1 863 1062 -5725 * 1482 141 13 4 chr1 195142939 195143173 -87050491 + AluSg/x SINE Alu 72 307 -3 4020 145 16 3 chr1 195143175 195143846 -87049818 + L1PA14 LINE L1 5482 6161 0 1796 114 1 32 chr1 195143849 195144134 -87049530 + MER4D LTR ERV1 184 459 -413 1681 144 22 0 chr1 195144134 195144405 -87049259 + MER4D LTR ERV1 596 872 -31 22 35 0 0 chr1 195144465 195144494 -87049170 + AT_rich Low_complexity Low_complexity 1 29 0 1376 322 38 34 chr1 195144500 195145003 -87048661 + L1PA15 LINE L1 335 839 -5948 6843 192 27 34 chr1 195145005 195147408 -87046256 + L1PA15 LINE L1 2377 5353 -1463 2277 77 7 39 chr1 195147408 195147718 -87045946 + AluSq SINE Alu 1 300 -13 6843 192 27 34 chr1 195147718 195149173 -87044491 + L1PA15 LINE L1 5353 6816 0 4085 169 38 40 chr1 195149168 195149493 -87044171 + L1MA9 LINE L1 6461 6785 -946 * 2174 120 10 0 chr1 195149493 195149801 -87043863 - AluSq SINE Alu -2 311 1 4085 169 38 40 chr1 195149801 195150536 -87043128 + L1MA9 LINE L1 6785 7529 -202 331 216 0 14 chr1 195150548 195150622 -87043042 + Tigger5 DNA MER2_type 7 79 -2244 258 170 128 0 chr1 195150631 195150678 -87042986 + Tigger5 DNA MER2_type 2271 2323 0 1394 94 0 0 chr1 195150678 195150879 -87042785 + L1MA9 LINE L1 6110 6310 -2 2011 218 81 14 chr1 195150888 195151615 -87042049 + L1MB3 LINE L1 4758 5541 -642 845 157 16 43 chr1 195151617 195151648 -87042016 + L1MB3 LINE L1 5997 6027 -156 1290 199 12 109 chr1 195151648 195152050 -87041614 - MLT1A1 LTR MaLR 0 365 3 845 157 16 43 chr1 195152050 195152203 -87041461 + L1MB3 LINE L1 6027 6176 -7 413 339 83 40 chr1 195152815 195153210 -87040454 + L2 LINE L2 2851 3262 -10 277 289 77 39 chr1 195153343 195153447 -87040217 + L2 LINE L2 3148 3255 -17 210 279 29 81 chr1 195153571 195153707 -87039957 - L3b LINE CR1 -138 1445 1317 444 288 218 2 chr1 195153770 195153957 -87039707 - MIR SINE MIR -37 225 1 1612 143 0 55 chr1 195153997 195154160 -87039504 - AluJb SINE Alu -32 280 136 1926 125 0 25 chr1 195154160 195154441 -87039223 - AluSx SINE Alu -38 274 1 1612 143 0 55 chr1 195154441 195154550 -87039114 - AluJb SINE Alu -176 136 23 5983 109 18 46 chr1 195154581 195156313 -87037351 - L1PA14 LINE L1 -2 6159 4462 4019 163 10 19 chr1 195156313 195157081 -87036583 + L1PA14 LINE L1 3730 4490 -1656 691 231 19 140 chr1 195157100 195157364 -87036300 - MIR SINE MIR -28 234 3 373 261 36 66 chr1 195158077 195158269 -87035395 - MIR SINE MIR -65 143 5 225 346 143 25 chr1 195160083 195160398 -87033266 + L2 LINE L2 2270 2621 -693 225 211 0 35 chr1 195160421 195160478 -87033186 + GA-rich Low_complexity Low_complexity 2 56 0 652 250 40 30 chr1 195161200 195161400 -87032264 + MIR SINE MIR 28 229 -33 215 282 169 0 chr1 195161413 195161484 -87032180 + L2 LINE L2 3223 3305 -8 31 0 0 0 chr1 195161789 195161820 -87031844 + AT_rich Low_complexity Low_complexity 1 31 0 2656 45 0 0 chr1 195162893 195163204 -87030460 + AluY SINE Alu 1 311 0 560 167 17 17 chr1 195163262 195163382 -87030282 + L1PA15 LINE L1 6045 6164 -1 204 111 22 44 chr1 195164104 195164149 -87029515 + CT-rich Low_complexity Low_complexity 3 46 0 907 198 15 50 chr1 195164149 195164351 -87029313 - AluJo SINE Alu -117 195 1 256 270 180 10 chr1 195164460 195164560 -87029104 - L2 LINE L2 -11 3302 3186 2441 96 3 0 chr1 195165124 195165436 -87028228 - AluSp SINE Alu 0 313 1 699 114 15 38 chr1 195166023 195166155 -87027509 + L1MB4 LINE L1 6045 6173 -7 612 250 0 0 chr1 195167086 195167210 -87026454 + L2 LINE L2 3189 3312 -1 278 276 0 10 chr1 195167210 195167308 -87026356 + MER103 DNA DNA 70 166 0 1672 166 84 5 chr1 195167775 195168142 -87025522 - L1MB7 LINE L1 -9 6175 5780 339 253 49 31 chr1 195168144 195168205 -87025459 - MER57A LTR ERV1 0 403 345 215 59 0 29 chr1 195168205 195168239 -87025425 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 339 253 49 31 chr1 195168239 195168339 -87025325 - MER57A LTR ERV1 -58 345 239 302 206 14 14 chr1 195168404 195168477 -87025187 - LTR54 LTR ERV1 -437 73 1 237 111 0 0 chr1 195168482 195168518 -87025146 - L1MB7 LINE L1 -399 5775 5740 356 200 59 0 chr1 195168520 195168605 -87025059 - HUERS-P2 LTR ERV1 -2998 90 1 4131 133 25 82 chr1 195168605 195169437 -87024227 - LTR1 LTR ERV1 0 785 1 6373 237 63 66 chr1 195169440 195173511 -87020153 - L1M4c LINE L1 -1551 5093 1011 2226 184 60 0 chr1 195173511 195173946 -87019718 - LOR1b LTR ERV1 0 461 1 6373 237 63 66 chr1 195173946 195174221 -87019443 - L1M4c LINE L1 -5633 1011 737 324 119 0 0 chr1 195174221 195174280 -87019384 + (CA)n Simple_repeat Simple_repeat 1 59 0 6373 237 63 66 chr1 195174280 195174725 -87018939 - L1M4c LINE L1 -5907 737 199 2365 103 0 0 chr1 195174725 195175026 -87018638 - AluSq SINE Alu -12 301 1 6373 237 63 66 chr1 195175026 195175171 -87018493 - L1M4c LINE L1 -6445 199 55 295 332 92 55 chr1 195176529 195176821 -87016843 + L2 LINE L2 2945 3247 -25 185 222 67 0 chr1 195176883 195176928 -87016736 - L2 LINE L2 -1 3312 3265 260 326 11 11 chr1 195177418 195177513 -87016151 - L3 LINE CR1 -14 1563 1469 2025 132 0 3 chr1 195178065 195178353 -87015311 - AluSg SINE Alu -23 287 1 25 31 0 0 chr1 195178413 195178445 -87015219 + AT_rich Low_complexity Low_complexity 1 32 0 244 357 41 0 chr1 195178618 195178789 -87014875 + L1ME3A LINE L1 5988 6165 -5 392 371 25 5 chr1 195178929 195179131 -87014533 - L2 LINE L2 -448 2866 2661 472 228 9 0 chr1 195180372 195180486 -87013178 - MER115 DNA AcHobo -8 685 571 669 307 102 8 chr1 195180539 195180793 -87012871 - MER115 DNA AcHobo -315 378 101 419 52 17 0 chr1 195180800 195180858 -87012806 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 696 303 133 18 chr1 195181384 195181829 -87011835 - MLT1D LTR MaLR -9 496 1 1680 185 59 8 chr1 195181914 195182270 -87011394 + MLT1A2 LTR MaLR 1 374 0 1118 314 140 15 chr1 195182375 195183184 -87010480 - L3 LINE CR1 -1 1576 667 511 284 50 21 chr1 195183576 195183717 -87009947 + MIR SINE MIR 1 145 -117 1147 212 68 58 chr1 195183733 195184203 -87009461 - MER39 LTR ERV1 -20 687 1 541 252 8 0 chr1 195184223 195184346 -87009318 + MIR SINE MIR 139 262 0 1670 209 3 16 chr1 195184686 195185070 -87008594 - AluJo SINE Alu 0 381 2 596 244 30 0 chr1 195185866 195186030 -87007634 - MER115 DNA AcHobo 0 693 525 334 266 11 32 chr1 195186075 195186169 -87007495 - MER115 DNA AcHobo -385 308 217 2080 87 0 11 chr1 195186671 195187003 -87006661 + AluY SINE Alu 1 329 0 612 193 52 16 chr1 195187007 195187199 -87006465 + MER69 DNA AcHobo 2107 2305 -221 583 278 176 19 chr1 195187294 195187510 -87006154 - MIR SINE MIR 0 262 13 408 270 128 20 chr1 195187561 195187709 -87005955 + MIR SINE MIR 58 221 -41 272 184 0 0 chr1 195189219 195189268 -87004396 + HERVH LTR ERV1 5968 6016 -1697 * 3452 102 14 18 chr1 195189261 195189820 -87003844 + HERVH LTR ERV1 7157 7713 0 2262 126 72 21 chr1 195189820 195190248 -87003416 + LTR7 LTR ERV1 1 450 0 203 263 263 11 chr1 195190794 195190889 -87002775 + MIR3 SINE MIR 44 162 -46 1915 177 120 22 chr1 195191079 195191264 -87002400 + Tigger6 DNA MER2_type 1055 1221 -376 4667 131 50 45 chr1 195191264 195192162 -87001502 - MER4D LTR ERV1 0 903 1 1915 177 120 22 chr1 195192162 195192467 -87001197 + Tigger6 DNA MER2_type 1221 1593 -4 280 130 19 0 chr1 195192478 195192532 -87001132 - Charlie2 DNA MER1_type -65 2797 2743 1307 140 42 38 chr1 195192532 195192833 -87000831 - LTR29 LTR ERV1 0 600 330 622 215 76 13 chr1 195192944 195193102 -87000562 + MER4E LTR ERV1 1 168 -611 1274 217 19 64 chr1 195193106 195193480 -87000184 + MER4D LTR ERV1 544 900 -3 734 233 112 0 chr1 195193490 195193696 -86999968 - LTR48B LTR ERV1 -415 229 1 442 234 156 21 chr1 195193873 195194065 -86999599 - Charlie2 DNA MER1_type -2640 222 5 240 35 0 0 chr1 195194668 195194697 -86998967 + (TTA)n Simple_repeat Simple_repeat 2 30 0 13304 86 10 9 chr1 195194698 195197342 -86996322 - L1PA7 LINE L1 -17 6452 3792 2949 109 7 0 chr1 195197345 195197765 -86995899 - L1PA7 LINE L1 -6028 433 11 3490 138 38 45 chr1 195197851 195198684 -86994980 + MER4D LTR ERV1 1 755 -11 224 217 0 0 chr1 195198710 195198756 -86994908 + CT-rich Low_complexity Low_complexity 1 46 0 267 263 68 25 chr1 195198929 195199047 -86994617 - L2 LINE L2 -534 2780 2658 306 246 64 30 chr1 195199954 195200096 -86993568 + L1MEd LINE L1 1140 1277 -4852 198 0 0 0 chr1 195200726 195200748 -86992916 + (TCTCTG)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr1 195201139 195201163 -86992501 + AT_rich Low_complexity Low_complexity 1 24 0 245 287 28 84 chr1 195201592 195201735 -86991929 - MIR SINE MIR -16 246 112 204 264 0 19 chr1 195202898 195202951 -86990713 + L2 LINE L2 3227 3278 -35 2790 75 16 0 chr1 195203757 195204144 -86989520 + L1MA2 LINE L1 5912 6304 0 31 0 0 0 chr1 195204144 195204175 -86989489 + AT_rich Low_complexity Low_complexity 1 31 0 396 196 140 0 chr1 195204447 195204554 -86989110 - LTR67 LTR ERVL -4 553 432 1541 74 14 0 chr1 195204877 195205092 -86988572 - L1PA14 LINE L1 0 7599 7382 2252 88 0 53 chr1 195205471 195205789 -86987875 + AluY SINE Alu 1 301 -10 15134 161 38 34 chr1 195207761 195214375 -86979289 - L1PA14 LINE L1 -202 7397 762 329 240 13 0 chr1 195214760 195214835 -86978829 + L1MC4 LINE L1 6628 6703 -1339 2563 62 0 0 chr1 195214926 195215231 -86978433 + AluY SINE Alu 1 305 -6 260 294 79 0 chr1 195216269 195216376 -86977288 - MIR SINE MIR -66 142 65 647 113 113 42 chr1 195217327 195217469 -86976195 + L1MA9 LINE L1 6156 6307 -5 333 310 69 0 chr1 195217544 195217660 -86976004 + L1MC4 LINE L1 6580 6703 -1339 * 350 321 0 0 chr1 195217581 195217687 -86975977 - L1MC4 LINE L1 -1322 6720 6615 354 80 0 0 chr1 195218566 195218616 -86975048 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 448 391 72 38 chr1 195218618 195219063 -86974601 - L2 LINE L2 -5 3267 2808 41659 41 3 6 chr1 195219135 195225296 -86968368 + L1PA4 LINE L1 16 6152 -3 30 0 0 0 chr1 195225354 195225384 -86968280 + AT_rich Low_complexity Low_complexity 1 30 0 683 145 53 0 chr1 195225415 195225546 -86968118 - MER39B LTR ERV1 -4 649 512 261 119 0 0 chr1 195225557 195225599 -86968065 + MER39B LTR ERV1 417 458 -195 2209 124 21 21 chr1 195225599 195225978 -86967686 - MER39B LTR ERV1 -274 379 1 279 221 221 21 chr1 195226291 195226431 -86967233 - MLT1L LTR MaLR -341 170 3 292 353 39 39 chr1 195226463 195226667 -86966997 - L2 LINE L2 -556 2758 2555 325 193 0 0 chr1 195227312 195227369 -86966295 - Tigger3b DNA MER2_type -3 1229 1173 * 5395 113 30 13 chr1 195227368 195228287 -86965377 - Tigger3b DNA MER2_type -295 936 2 668 284 10 36 chr1 195228299 195228493 -86965171 - MIR SINE MIR -73 189 1 23 33 0 0 chr1 195229249 195229279 -86964385 + AT_rich Low_complexity Low_complexity 1 30 0 352 251 262 49 chr1 195229546 195229912 -86963752 - MLT1J1 LTR MaLR 0 446 3 6954 196 46 11 chr1 195230004 195230097 -86963567 - L1MA9 LINE L1 0 6312 6224 5032 78 8 1 chr1 195230097 195230753 -86962911 + PABL_A LTR ERV1 1 660 0 6954 196 46 11 chr1 195230753 195232406 -86961258 - L1MA9 LINE L1 -88 6224 4630 1507 114 0 0 chr1 195232406 195232607 -86961057 - AluSg/x SINE Alu -8 302 102 6954 196 46 11 chr1 195232607 195234259 -86959405 - L1MA9 LINE L1 -1682 4630 2731 5934 119 25 12 chr1 195234252 195235418 -86958246 + L1MA4A LINE L1 5109 6292 -11 * 511 248 14 0 chr1 195235425 195235566 -86958098 - L1M4 LINE L1 -3396 3771 3629 2958 266 58 28 chr1 195235568 195237316 -86956348 - L1M4 LINE L1 -3962 3205 274 2347 131 16 13 chr1 195238212 195238586 -86955078 - THE1C LTR MaLR 0 375 1 1795 129 21 12 chr1 195238586 195238906 -86954758 - MLT1J1-int LTR MaLR 0 1580 1299 * 5794 113 54 8 chr1 195238902 195239817 -86953847 - THE1C-int LTR MaLR -623 957 1 1969 117 106 6 chr1 195239817 195240158 -86953506 - THE1C LTR MaLR 0 375 1 236 258 108 108 chr1 195240520 195240706 -86952958 - MIR SINE MIR -74 188 3 209 265 10 71 chr1 195240707 195240805 -86952859 + L2 LINE L2 3181 3272 0 4648 126 4 7 chr1 195241791 195242528 -86951136 + L1PA15 LINE L1 5423 6157 -8 227 100 25 0 chr1 195242528 195242568 -86951096 + L1MB4 LINE L1 6131 6171 -9 2540 110 21 0 chr1 195242609 195242981 -86950683 + L1PA15 LINE L1 5769 6148 -17 194 246 16 49 chr1 195243078 195243139 -86950525 - L2 LINE L2 0 3272 3214 209 283 33 17 chr1 195243272 195243332 -86950332 - L2 LINE L2 -210 3062 3002 308 302 94 16 chr1 195243596 195243684 -86949980 - HAL1b LINE L1 -710 638 558 2214 87 3 16 chr1 195243684 195243993 -86949671 + AluY SINE Alu 1 305 -6 308 302 94 16 chr1 195243993 195244096 -86949568 - HAL1b LINE L1 -790 558 432 1690 214 70 33 chr1 195244099 195244581 -86949083 + MLT1D LTR MaLR 4 503 -2 548 302 107 4 chr1 195244644 195244869 -86948795 - MLT2F LTR ERVL -415 248 1 775 234 107 86 chr1 195244870 195245302 -86948362 - ERVL-F LTR ERVL -9 5755 5315 277 323 24 48 chr1 195245334 195245458 -86948206 + L2 LINE L2 2982 3102 -211 27 0 0 0 chr1 195246114 195246141 -86947523 + AT_rich Low_complexity Low_complexity 1 27 0 187 204 37 93 chr1 195246317 195246371 -86947293 + L2 LINE L2 3210 3260 -12 21 36 0 0 chr1 195247356 195247384 -86946280 + AT_rich Low_complexity Low_complexity 1 28 0 204 298 64 11 chr1 195247712 195247803 -86945861 - L2 LINE L2 -925 2389 2294 649 283 60 20 chr1 195247803 195248054 -86945610 + MIR SINE MIR 2 262 0 326 269 128 46 chr1 195248301 195248520 -86945144 - Charlie8 DNA MER1_type -2180 237 1 234 339 63 26 chr1 195248523 195248712 -86944952 - L2 LINE L2 -1151 2163 1968 531 304 44 6 chr1 195249528 195249686 -86943978 - MIR3 SINE MIR -43 165 2 264 30 0 0 chr1 195250093 195250126 -86943538 + (CA)n Simple_repeat Simple_repeat 2 34 0 253 229 0 0 chr1 195250190 195250238 -86943426 + L2 LINE L2 3251 3298 -15 395 317 0 10 chr1 195251566 195251670 -86941994 + MER91B DNA MER1_type 88 190 0 593 96 0 0 chr1 195252380 195252463 -86941201 + Alu SINE Alu 221 303 -8 304 231 115 0 chr1 195253600 195253704 -86939960 + MIR SINE MIR 117 232 -30 1695 146 7 47 chr1 195254092 195254415 -86939249 - AluJb SINE Alu 0 312 1 1814 129 45 21 chr1 195255319 195255605 -86938059 + AluSx SINE Alu 2 294 -18 273 313 108 23 chr1 195256175 195256351 -86937313 + MIR3 SINE MIR 9 199 -9 273 305 126 50 chr1 195257041 195257284 -86936380 + MIR SINE MIR 1 251 -11 1786 140 4 0 chr1 195257285 195257542 -86936122 + AluSx SINE Alu 1 258 -54 2518 126 12 5 chr1 195257650 195258070 -86935594 + L1MC1 LINE L1 5688 6110 -223 544 286 31 49 chr1 195258110 195258334 -86935330 + MIR SINE MIR 43 262 0 239 260 14 41 chr1 195258836 195258909 -86934755 - MIR3 SINE MIR -41 167 97 345 276 33 92 chr1 195259293 195259445 -86934219 - MER5A DNA MER1_type 0 189 47 278 393 30 22 chr1 195259646 195259781 -86933883 - L2 LINE L2 -12 3260 3125 1641 164 47 40 chr1 195259991 195260290 -86933374 + AluJb SINE Alu 1 301 -11 407 287 70 6 chr1 195260294 195260451 -86933213 - MIR SINE MIR 0 262 96 5056 79 22 21 chr1 195262528 195263247 -86930417 + L1PA11 LINE L1 5455 6174 0 272 250 60 0 chr1 195263254 195263338 -86930326 - L1M4 LINE L1 -1287 4859 4771 843 81 0 0 chr1 195263918 195264029 -86929635 + AluY SINE Alu 191 301 -10 824 108 0 0 chr1 195264039 195264159 -86929505 + L1PA15 LINE L1 6040 6159 -6 379 322 89 48 chr1 195264509 195264655 -86929009 + L2 LINE L2 3121 3272 0 1639 206 61 30 chr1 195264669 195265110 -86928554 + MLT1C LTR MaLR 7 461 -6 215 287 0 85 chr1 195265189 195265283 -86928381 - MIR3 SINE MIR -24 184 99 221 291 171 34 chr1 195265580 195265697 -86927967 + MIR3 SINE MIR 9 141 -67 186 289 184 18 chr1 195266926 195267073 -86926591 - MIR SINE MIR -71 191 16 282 160 0 0 chr1 195267436 195267486 -86926178 + (TA)n Simple_repeat Simple_repeat 1 50 0 212 361 8 33 chr1 195268085 195268207 -86925457 + L2 LINE L2 2783 2901 -413 224 271 21 0 chr1 195268464 195268512 -86925152 + L2 LINE L2 3242 3290 -23 261 289 174 16 chr1 195268576 195268697 -86924967 + MIR3 SINE MIR 64 203 -5 347 303 18 9 chr1 195269618 195269727 -86923937 - MIR3 SINE MIR -1 207 98 231 88 0 0 chr1 195270115 195270149 -86923515 + (CCA)n Simple_repeat Simple_repeat 2 35 0 207 125 0 0 chr1 195270241 195270281 -86923383 + (TC)n Simple_repeat Simple_repeat 1 40 0 351 60 0 0 chr1 195270283 195270333 -86923331 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr1 195270516 195270537 -86923127 + AT_rich Low_complexity Low_complexity 1 21 0 214 286 12 24 chr1 195273226 195273310 -86920354 - MIR SINE MIR 0 262 180 225 280 30 80 chr1 195273615 195273715 -86919949 - L2 LINE L2 -14 3258 3164 1718 171 19 23 chr1 195274881 195275191 -86918473 - AluJo SINE Alu -1 311 3 232 229 127 119 chr1 195275833 195276077 -86917587 - L2 LINE L2 -386 2928 2683 379 320 40 16 chr1 195276190 195276315 -86917349 + MER91A DNA MER1_type 45 172 -24 206 211 58 19 chr1 195276386 195276438 -86917226 + MER91A DNA MER1_type 132 185 -11 250 312 112 40 chr1 195277077 195277185 -86916479 + L3 LINE CR1 1413 1529 -48 313 312 0 71 chr1 195277185 195277286 -86916378 - MER5A DNA MER1_type 0 189 101 2529 154 24 2 chr1 195277286 195277709 -86915955 - MSTB1 LTR MaLR 0 432 1 313 312 0 71 chr1 195277709 195277761 -86915903 - MER5A DNA MER1_type -88 101 47 1991 94 3 10 chr1 195277932 195278220 -86915444 + L1MA1 LINE L1 6008 6293 -9 226 94 0 75 chr1 195278246 195278299 -86915365 + (TAAAAA)n Simple_repeat Simple_repeat 4 52 0 423 207 26 9 chr1 195278963 195279109 -86914555 - L1ME1 LINE L1 -1 6333 6053 900 226 23 28 chr1 195279231 195279448 -86914216 + MER20 DNA MER1_type 4 219 0 202 226 57 19 chr1 195279504 195279557 -86914107 + L2 LINE L2 2926 2980 -292 * 789 206 22 17 chr1 195279553 195279733 -86913931 - MIR SINE MIR -79 183 3 1438 131 31 0 chr1 195279873 195280095 -86913569 + MER30 DNA MER1_type 1 229 -1 1430 180 45 58 chr1 195280352 195280729 -86912935 + MLT1A2 LTR MaLR 1 372 -2 225 323 42 0 chr1 195281187 195281283 -86912381 + MIR SINE MIR 151 250 -12 384 244 12 0 chr1 195281307 195281393 -86912271 + MER5A DNA MER1_type 20 106 -83 21 0 0 0 chr1 195281886 195281907 -86911757 + AT_rich Low_complexity Low_complexity 1 21 0 217 159 23 0 chr1 195282138 195282182 -86911482 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 219 265 12 72 chr1 195282856 195282939 -86910725 + MIR SINE MIR 185 262 0 377 177 0 0 chr1 195282942 195283004 -86910660 - MER63 DNA MER1_type -315 745 684 449 208 32 19 chr1 195283048 195283157 -86910507 + Charlie5 DNA MER1_type 2469 2582 -42 1818 145 25 3 chr1 195283157 195283439 -86910225 - AluJo SINE Alu -24 288 1 449 208 32 19 chr1 195283439 195283483 -86910181 + Charlie5 DNA MER1_type 2582 2624 0 22 0 0 0 chr1 195283986 195284008 -86909656 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 195284087 195284109 -86909555 + AT_rich Low_complexity Low_complexity 1 22 0 4339 87 53 0 chr1 195284797 195285060 -86908604 + L1PB1 LINE L1 5497 5745 -406 252 0 0 0 chr1 195285060 195285088 -86908576 + (CA)n Simple_repeat Simple_repeat 2 29 0 4339 87 53 0 chr1 195285088 195285446 -86908218 + L1PB1 LINE L1 5745 6151 0 1050 290 74 97 chr1 195285806 195285898 -86907766 - L2 LINE L2 -81 3232 3139 1638 179 80 14 chr1 195285898 195286249 -86907415 + MLT1A2 LTR MaLR 1 374 0 1050 290 74 97 chr1 195286249 195287067 -86906597 - L2 LINE L2 -174 3139 2344 400 277 27 0 chr1 195287071 195287183 -86906481 - MIR SINE MIR -70 192 78 551 311 87 10 chr1 195287229 195287435 -86906229 + MIR SINE MIR 41 262 0 615 229 24 149 chr1 195288398 195288647 -86905017 + MIR SINE MIR 1 218 -44 445 214 14 57 chr1 195289991 195290131 -86903533 - MIR SINE MIR -127 135 2 184 203 156 16 chr1 195290662 195290726 -86902938 - L3 LINE CR1 -338 1239 1167 204 294 185 33 chr1 195290914 195291006 -86902658 + L2 LINE L2 3163 3268 -4 375 262 7 74 chr1 195291592 195291792 -86901872 + MLT1J2 LTR MaLR 27 210 -236 31455 73 4 12 chr1 195292828 195297276 -86896388 + L1PA5 LINE L1 2 4412 -1734 8039 44 0 0 chr1 195297286 195298318 -86895346 - L1P LINE L1 -1421 4725 3694 4211 85 2 6 chr1 195298316 195298939 -86894725 + L1P LINE L1 1087 1706 -4440 * 7188 45 5 2 chr1 195299143 195300341 -86893323 + L1PA5 LINE L1 4947 6146 -8 1746 170 57 12 chr1 195300578 195300913 -86892751 - MER61D LTR ERV1 0 501 152 450 123 0 0 chr1 195300982 195301047 -86892617 - MER61D LTR ERV1 -323 178 114 713 171 92 6 chr1 195301144 195301308 -86892356 - L1MB1 LINE L1 -4 6164 5987 22 0 0 0 chr1 195301339 195301361 -86892303 + AT_rich Low_complexity Low_complexity 1 22 0 1798 161 15 15 chr1 195301923 195302264 -86891400 + L1MA5A LINE L1 5687 6027 -270 739 118 0 44 chr1 195302266 195302298 -86891366 + L1P4 LINE L1 3808 3840 -2306 2100 160 28 6 chr1 195302298 195302654 -86891010 + THE1B LTR MaLR 1 364 0 739 118 0 44 chr1 195302654 195302757 -86890907 + L1P4 LINE L1 3840 3937 -2209 6006 157 15 6 chr1 195302791 195304223 -86889441 + L1P4 LINE L1 4134 5572 -593 207 278 120 75 chr1 195304348 195304481 -86889183 + MIR SINE MIR 53 191 -71 2015 160 3 3 chr1 195305139 195305446 -86888218 + AluSx SINE Alu 1 307 -5 245 109 22 0 chr1 195305516 195305562 -86888102 + CT-rich Low_complexity Low_complexity 3 49 0 582 324 50 9 chr1 195305868 195306450 -86887214 - L1ME3A LINE L1 -295 5875 5261 1142 231 42 16 chr1 195306927 195307235 -86886429 - LTR53 LTR ERVL -15 504 189 244 214 155 0 chr1 195307344 195307428 -86886236 - LTR53 LTR ERVL -417 102 6 1245 226 132 25 chr1 195307922 195308330 -86885334 + MLT1D LTR MaLR 54 505 0 3282 152 22 24 chr1 195308342 195308939 -86884725 + LTR26 LTR ERV1 1 596 -7 2792 19 0 0 chr1 195309751 195310062 -86883602 + AluYa5 SINE Alu 1 311 0 3978 136 40 7 chr1 195310850 195311554 -86882110 - L1MA6 LINE L1 -6 6294 5568 1552 98 44 0 chr1 195311554 195311769 -86881895 - L1PA8 LINE L1 -5 6167 5933 1332 51 11 0 chr1 195311769 195311946 -86881718 + L1P3 LINE L1 5615 5793 -379 389 319 60 38 chr1 195312547 195312732 -86880932 + L3 LINE CR1 1381 1569 -8 21 36 0 0 chr1 195313011 195313039 -86880625 + AT_rich Low_complexity Low_complexity 1 28 0 218 381 138 32 chr1 195313153 195313464 -86880200 - L2 LINE L2 0 3272 2905 1971 146 10 7 chr1 195313464 195313772 -86879892 + AluY SINE Alu 1 309 -2 218 381 138 32 chr1 195313772 195313872 -86879792 - L2 LINE L2 -367 2905 2817 378 159 28 28 chr1 195313874 195313981 -86879683 + GA-rich Low_complexity Low_complexity 1 107 0 211 382 8 8 chr1 195314043 195314166 -86879498 - L2 LINE L2 -461 2853 2731 468 316 69 25 chr1 195314454 195314729 -86878935 - L2 LINE L2 -773 2541 2255 399 246 44 9 chr1 195315166 195315280 -86878384 + MIR SINE MIR 137 254 -8 559 63 38 0 chr1 195315343 195315422 -86878242 + L1PA12 LINE L1 6086 6167 -1 2665 39 0 0 chr1 195315839 195316149 -86877515 - AluY SINE Alu -1 310 1 1027 175 40 0 chr1 195316332 195316509 -86877155 + MER5A DNA MER1_type 1 184 -5 427 262 84 0 chr1 195316774 195316881 -86876783 + L2 LINE L2 3155 3270 -2 702 273 65 0 chr1 195316941 195317167 -86876497 + MIR SINE MIR 18 261 -1 1223 193 149 30 chr1 195319579 195320015 -86873649 - LTR54B LTR ERV1 -2 496 9 473 227 67 17 chr1 195320329 195320448 -86873216 - MER5B DNA MER1_type 0 178 54 1625 185 57 38 chr1 195321602 195321969 -86871695 - MLT1A2 LTR MaLR 0 374 1 213 222 0 0 chr1 195322554 195322599 -86871065 + L2 LINE L2 2190 2234 -1080 1056 261 42 114 chr1 195322765 195323502 -86870162 - MER21B LTR ERV1 -157 706 23 21308 177 18 28 chr1 195323574 195327986 -86865678 + L1PA12 LINE L1 1 5693 -1891 2551 59 7 0 chr1 195327986 195328290 -86865374 - AluY SINE Alu -5 306 1 21308 177 18 28 chr1 195328290 195328757 -86864907 + L1PA12 LINE L1 5693 6163 -1421 1303 201 13 13 chr1 195328773 195329072 -86864592 - Charlie2a DNA MER1_type -803 2059 1761 520 277 130 38 chr1 195329074 195329317 -86864347 - LTR16A LTR ERVL -181 269 10 1284 111 5 10 chr1 195329337 195329536 -86864128 + L1PA13 LINE L1 5961 6158 -5 1547 167 17 53 chr1 195329545 195329845 -86863819 - AluJb SINE Alu -23 289 1 601 225 104 0 chr1 195329909 195330082 -86863582 - Charlie2a DNA MER1_type -1206 1656 1466 2036 244 69 39 chr1 195330150 195330799 -86862865 - Charlie2b DNA MER1_type -2113 669 1 227 370 41 14 chr1 195331196 195331342 -86862322 + L2 LINE L2 2594 2743 -571 220 391 93 65 chr1 195331894 195332142 -86861522 + L2 LINE L2 2999 3253 -19 1074 207 70 0 chr1 195332921 195333134 -86860530 - MLT1F LTR MaLR 0 542 315 549 94 0 0 chr1 195333206 195333291 -86860373 + (GGAGA)n Simple_repeat Simple_repeat 2 86 0 2347 255 26 17 chr1 195333291 195334063 -86859601 + L1MDa LINE L1 1737 2515 -4025 657 244 50 9 chr1 195334071 195334292 -86859372 + L1MDa LINE L1 2574 2803 -3737 380 169 0 84 chr1 195334625 195334708 -86858956 - Tigger7 DNA MER2_type -16 2475 2400 * 2969 170 36 4 chr1 195334707 195335212 -86858452 - Tigger7 DNA MER2_type -212 521 1 1949 286 70 21 chr1 195335217 195335892 -86857772 - L2 LINE L2 -572 2742 2035 589 293 49 0 chr1 195335893 195336057 -86857607 - L2 LINE L2 -1989 1325 1154 883 149 58 0 chr1 195336312 195336466 -86857198 - HSMAR2 DNA Mariner -1 1301 1139 2808 54 0 8 chr1 195336466 195336839 -86856825 - L1PA6 LINE L1 -925 5221 4852 7055 52 6 1 chr1 195336850 195337745 -86855919 + L1PA6 LINE L1 5254 6152 -2 7117 143 22 4 chr1 195337747 195338877 -86854787 - HSMAR2 DNA Mariner -150 1152 3 310 308 33 0 chr1 195339204 195339324 -86854340 + L1ME4a LINE L1 5983 6106 -15 276 30 0 0 chr1 195339512 195339545 -86854119 + (CA)n Simple_repeat Simple_repeat 1 33 0 327 294 196 5 chr1 195339681 195339875 -86853789 - L1MC/D LINE L1 -2023 5785 5555 420 190 204 11 chr1 195339883 195340071 -86853593 + MLT1E2 LTR MaLR 4 220 -404 1030 245 84 51 chr1 195340502 195340894 -86852770 - LTR40a LTR ERVL -114 405 1 344 233 0 0 chr1 195340921 195340994 -86852670 - HERVL40 LTR ERVL -50 5480 5408 326 285 56 45 chr1 195341350 195341529 -86852135 + L1M4 LINE L1 3875 4055 -2091 185 306 16 0 chr1 195342914 195342976 -86850688 + MIR SINE MIR 198 260 -2 245 304 50 37 chr1 195343090 195343271 -86850393 - MIR SINE MIR -16 246 1 408 300 0 0 chr1 195343599 195343699 -86849965 + L2 LINE L2 3214 3313 0 553 310 156 34 chr1 195344572 195345189 -86848475 + L2 LINE L2 1903 2594 -720 334 361 57 0 chr1 195345715 195345837 -86847827 + L2 LINE L2 3141 3269 -3 292 220 0 0 chr1 195346467 195346526 -86847138 + U13 snRNA snRNA 1 59 -45 25 0 0 0 chr1 195346943 195346968 -86846696 + AT_rich Low_complexity Low_complexity 1 25 0 664 245 53 5 chr1 195347130 195347318 -86846346 - MIR SINE MIR -6 256 60 2146 116 32 0 chr1 195347386 195347732 -86845932 + L1MA4 LINE L1 5939 6295 -5 2241 119 0 0 chr1 195347853 195348147 -86845517 - AluSg SINE Alu -16 294 1 301 312 46 0 chr1 195348833 195348942 -86844722 + L1ME3 LINE L1 619 732 -5473 461 288 40 9 chr1 195348944 195349166 -86844498 + L1ME3 LINE L1 1589 1817 -4579 1819 133 13 36 chr1 195349267 195349569 -86844095 + Tigger1 DNA MER2_type 532 826 -1592 9858 128 29 10 chr1 195349732 195351293 -86842371 + Tigger1 DNA MER2_type 828 2417 -1 345 225 38 0 chr1 195351294 195351374 -86842290 + MER58B DNA MER1_type 259 341 0 2246 259 52 40 chr1 195351475 195352426 -86841238 + L1ME3 LINE L1 4547 5531 -700 1670 166 0 54 chr1 195352426 195352739 -86840925 + AluJo SINE Alu 1 296 -16 2246 259 52 40 chr1 195352739 195353442 -86840222 + L1ME3 LINE L1 5531 6224 -7 485 306 88 22 chr1 195353428 195353552 -86840112 + L1MEd LINE L1 2515 2629 -3586 * 1452 170 62 33 chr1 195353552 195353849 -86839815 + AluJb SINE Alu 1 305 0 485 306 88 22 chr1 195353849 195354214 -86839450 + L1MEd LINE L1 2629 3037 -3178 1361 292 137 47 chr1 195354226 195355482 -86838182 + L1ME LINE L1 55 1423 -4973 12890 209 29 11 chr1 195355509 195356396 -86837268 + L1PA16 LINE L1 2014 2883 -3283 2354 171 31 0 chr1 195356396 195356811 -86836853 - MSTA LTR MaLR 0 428 1 12890 209 29 11 chr1 195356811 195359989 -86833675 + L1PA16 LINE L1 2883 6153 -13 328 263 71 29 chr1 195359990 195360134 -86833530 + L1ME LINE L1 3112 3261 -2954 2161 224 49 9 chr1 195360239 195360787 -86832877 + L1ME LINE L1 5323 5892 -343 4152 126 12 8 chr1 195360789 195361433 -86832231 - HSMAR2 DNA Mariner -653 649 3 274 245 31 80 chr1 195361675 195361838 -86831826 - L2 LINE L2 -1 3312 3158 180 313 88 38 chr1 195362157 195362237 -86831427 - L2 LINE L2 -380 2933 2850 204 225 0 0 chr1 195363083 195363123 -86830541 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 264 246 193 53 chr1 195363913 195364100 -86829564 - MIR SINE MIR -19 243 31 791 272 46 39 chr1 195364460 195364765 -86828899 + LTR16A LTR ERVL 56 362 -88 483 116 27 0 chr1 195365341 195365453 -86828211 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 261 309 168 13 chr1 195366047 195366196 -86827468 + MIR SINE MIR 19 190 -72 281 319 43 0 chr1 195366298 195366392 -86827272 + MIR3 SINE MIR 101 198 -10 286 229 48 48 chr1 195366631 195366736 -86826928 + MIR SINE MIR 128 232 -30 187 182 0 0 chr1 195366840 195366873 -86826791 - L2 LINE L2 0 3313 3281 187 238 369 0 chr1 195367319 195367403 -86826261 + MIR SINE MIR 38 152 -56 276 301 26 77 chr1 195367727 195367883 -86825781 - MIR3 SINE MIR -44 164 17 3917 82 39 11 chr1 195368247 195368811 -86824853 - LTR19B LTR ERV1 0 580 1 325 311 52 26 chr1 195368931 195369124 -86824540 - L1ME4a LINE L1 -89 6101 5904 1568 196 91 0 chr1 195369885 195370216 -86823448 - MLT1F1 LTR MaLR -206 361 1 1071 118 207 100 chr1 195370885 195371214 -86822450 - THE1B LTR MaLR 0 364 1 466 175 57 96 chr1 195371282 195371459 -86822205 + MER104 DNA Tc2 7 176 -4 833 226 28 0 chr1 195372511 195372728 -86820936 + L1MC4 LINE L1 7424 7646 -396 797 209 80 84 chr1 195372831 195373271 -86820393 + L1MC4 LINE L1 7604 8041 -1 737 241 60 48 chr1 195373347 195373678 -86819986 - L1ME4a LINE L1 -747 5468 5153 372 22 0 0 chr1 195373678 195373723 -86819941 + (TG)n Simple_repeat Simple_repeat 2 46 0 737 241 60 48 chr1 195373723 195373921 -86819743 - L1ME4a LINE L1 -1062 5153 4959 915 255 160 23 chr1 195373971 195374467 -86819197 - MLT1G3 LTR MaLR -7 548 1 2868 264 95 42 chr1 195374479 195376630 -86817034 - L1MEc LINE L1 -1861 4354 2113 485 214 22 181 chr1 195376631 195377067 -86816597 - LTR41 LTR ERVL 0 795 409 558 212 112 12 chr1 195377096 195377266 -86816398 - LTR41 LTR ERVL -586 187 1 222 303 182 20 chr1 195378278 195378377 -86815287 - MER91A DNA MER1_type -21 175 61 24 32 0 0 chr1 195378874 195378905 -86814759 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 195379477 195379499 -86814165 + AT_rich Low_complexity Low_complexity 1 22 0 276 313 98 28 chr1 195379828 195380042 -86813622 + L2 LINE L2 3043 3271 -42 2119 167 22 51 chr1 195381128 195381618 -86812046 - L1 LINE L1 -832 5314 4839 286 258 31 0 chr1 195381623 195381720 -86811944 + L1MA9 LINE L1 6183 6282 -30 22 0 0 0 chr1 195381720 195381742 -86811922 + AT_rich Low_complexity Low_complexity 1 22 0 354 184 235 0 chr1 195381990 195382088 -86811576 - MER5C DNA MER1_type 0 324 204 25 51 0 0 chr1 195382101 195382140 -86811524 + AT_rich Low_complexity Low_complexity 1 39 0 385 188 104 0 chr1 195382224 195382320 -86811344 - L1M4 LINE L1 -1053 5093 4988 985 266 171 0 chr1 195382324 195382651 -86811013 + MLT1H1 LTR MaLR 13 395 -160 244 62 0 0 chr1 195382758 195382790 -86810874 + U2 snRNA snRNA 3 34 -154 373 278 119 79 chr1 195382926 195383486 -86810178 + L1 LINE L1 4353 4944 -1202 1116 112 0 41 chr1 195383547 195383717 -86809947 + AluY SINE Alu 1 163 -148 311 98 20 0 chr1 195384088 195384139 -86809525 + L1ME LINE L1 5558 5609 -512 601 118 3 1 chr1 195384147 195384251 -86809413 + L1PA8 LINE L1 10 421 -6040 * 6830 139 11 14 chr1 195384243 195385392 -86808272 + L1PA8 LINE L1 308 1453 -5008 * 11330 94 15 7 chr1 195385390 195387796 -86805868 + L1PA8 LINE L1 3972 6383 -104 * 41224 43 6 0 chr1 195387794 195393907 -86799757 + L1PA4 LINE L1 1 6152 -3 923 40 0 24 chr1 195393967 195394091 -86799573 + L1PA8 LINE L1 6367 6487 0 362 199 31 87 chr1 195394094 195394255 -86799409 + L1ME4a LINE L1 5029 5180 -966 464 280 55 40 chr1 195394270 195394545 -86799119 + L1ME4a LINE L1 5597 5875 -246 1933 159 30 3 chr1 195394549 195394883 -86798781 + MER2 DNA MER2_type 1 343 -1 38 103 0 0 chr1 195395652 195395788 -86797876 + AT_rich Low_complexity Low_complexity 1 136 0 264 315 11 0 chr1 195395825 195395914 -86797750 - MIR SINE MIR -109 153 64 2529 83 0 0 chr1 195396266 195396579 -86797085 - AluSq SINE Alu 0 313 1 196 357 0 14 chr1 195397095 195397165 -86796499 + MIR SINE MIR 21 89 -119 1076 153 51 33 chr1 195397267 195397482 -86796182 + MER20 DNA MER1_type 1 219 0 943 118 0 0 chr1 195397810 195397937 -86795727 + AluSg/x SINE Alu 168 294 -18 22 0 0 0 chr1 195397937 195397959 -86795705 + AT_rich Low_complexity Low_complexity 1 22 0 2113 104 31 3 chr1 195397968 195398255 -86795409 + AluSg SINE Alu 1 295 -15 919 219 74 140 chr1 195398540 195398818 -86794846 + MLT2B1 LTR ERVL 6 301 -219 1347 188 47 73 chr1 195398818 195399202 -86794462 + MLT1A2 LTR MaLR 1 374 0 919 219 74 140 chr1 195399202 195399433 -86794231 + MLT2B1 LTR ERVL 301 479 -41 198 0 0 0 chr1 195399433 195399455 -86794209 + (TTAA)n Simple_repeat Simple_repeat 4 25 0 919 219 74 140 chr1 195399455 195399487 -86794177 + MLT2B1 LTR ERVL 479 512 -8 25645 179 47 11 chr1 195399493 195404505 -86789159 + ERVL-B1-B1 LTR ERVL 1 5300 -464 1791 140 58 24 chr1 195404505 195404798 -86788866 + AluJo SINE Alu 1 303 -9 25645 179 47 11 chr1 195404798 195405273 -86788391 + ERVL-B1-B1 LTR ERVL 5300 5757 -7 1403 181 148 80 chr1 195405273 195405719 -86787945 + MLT2B1 LTR ERVL 1 484 -36 411 21 0 0 chr1 195405719 195405767 -86787897 + (CA)n Simple_repeat Simple_repeat 2 49 0 1403 181 148 80 chr1 195405767 195405807 -86787857 + MLT2B1 LTR ERVL 484 520 0 2729 96 5 5 chr1 195406252 195406627 -86787037 + THE1C LTR MaLR 1 375 0 451 339 42 34 chr1 195406918 195407154 -86786510 + MIR SINE MIR 19 256 -6 204 296 34 0 chr1 195408028 195408116 -86785548 + L2 LINE L2 1346 1436 -1878 726 275 178 35 chr1 195408500 195408904 -86784760 - L2 LINE L2 0 3313 2852 263 352 9 9 chr1 195408923 195409031 -86784633 + L2 LINE L2 2966 3073 -199 203 233 0 0 chr1 195409120 195409163 -86784501 + L2 LINE L2 3229 3271 -1 347 125 0 16 chr1 195409164 195409228 -86784436 + (TGGA)n Simple_repeat Simple_repeat 2 64 0 233 345 0 11 chr1 195409458 195409545 -86784119 - L2 LINE L2 -1 3271 3186 342 320 79 26 chr1 195409690 195409918 -86783746 + MIR SINE MIR 2 241 -21 1464 230 60 10 chr1 195410773 195411173 -86782491 - MER31B LTR ERV1 -46 420 1 3380 173 41 10 chr1 195412123 195412810 -86780854 - MER67C LTR ERV1 -2 708 1 193 225 50 0 chr1 195412815 195412855 -86780809 + L2 LINE L2 3184 3225 -47 292 321 25 0 chr1 195412920 195413001 -86780663 - L2 LINE L2 -47 3266 3184 1151 173 18 44 chr1 195413157 195413382 -86780282 - MER20 DNA MER1_type 0 219 1 804 245 89 22 chr1 195413426 195413517 -86780147 + L1M4 LINE L1 2965 3048 -3098 2136 134 36 38 chr1 195413517 195413882 -86779782 + THE1B LTR MaLR 1 364 0 804 245 89 22 chr1 195413882 195414194 -86779470 + L1M4 LINE L1 3048 3395 -2751 538 190 0 0 chr1 195414226 195414326 -86779338 + MLT1I LTR MaLR 306 405 -4 2397 75 0 0 chr1 195414417 195414723 -86778941 - AluY SINE Alu -5 306 1 210 293 86 79 chr1 195415759 195415899 -86777765 + MER5A DNA MER1_type 25 165 -24 321 327 0 18 chr1 195416142 195416307 -86777357 - MLT1I LTR MaLR -208 201 40 439 308 88 12 chr1 195416558 195416794 -86776870 + L2 LINE L2 2784 3032 -240 608 160 0 0 chr1 195417058 195417164 -86776500 + L1P LINE L1 2920 3025 -3121 5288 157 28 44 chr1 195417817 195418905 -86774759 - MER11C LTR ERVK -1 1070 1 219 250 0 0 chr1 195418907 195418955 -86774709 + (TG)n Simple_repeat Simple_repeat 1 48 0 3604 158 8 17 chr1 195419383 195420037 -86773627 + L1P LINE L1 3065 3712 -2434 27 73 0 0 chr1 195420195 195420250 -86773414 + AT_rich Low_complexity Low_complexity 1 55 0 2571 187 34 38 chr1 195420357 195420864 -86772800 - MLT1D LTR MaLR 0 505 1 244 267 165 57 chr1 195422709 195422885 -86770779 + MER117 DNA MER1_type 3 197 0 308 286 68 14 chr1 195422887 195423012 -86770652 - MIR3 SINE MIR -50 158 22 2332 84 0 10 chr1 195423012 195423308 -86770356 - AluSp SINE Alu -20 293 1 308 286 68 14 chr1 195423308 195423329 -86770335 - MIR3 SINE MIR -186 22 4 1591 179 105 6 chr1 195423401 195423726 -86769938 + MLT1D LTR MaLR 3 359 -146 1862 239 127 30 chr1 195423796 195424506 -86769158 + L1ME3A LINE L1 5395 6170 0 201 211 19 19 chr1 195424698 195424750 -86768914 + L2 LINE L2 3221 3272 0 232 234 16 62 chr1 195424791 195424855 -86768809 - L2 LINE L2 -9 3263 3203 216 97 0 0 chr1 195424926 195424957 -86768707 + (A)n Simple_repeat Simple_repeat 1 31 0 279 0 0 0 chr1 195424984 195425015 -86768649 + (A)n Simple_repeat Simple_repeat 1 31 0 1904 98 4 0 chr1 195426840 195427085 -86766579 + AluSx SINE Alu 50 295 -17 596 262 71 41 chr1 195429420 195429774 -86763890 + L1MC4a LINE L1 5528 5791 -330 233 119 0 0 chr1 195429852 195429894 -86763770 + LTR66 LTR ERVL 398 439 -171 22 0 0 0 chr1 195430016 195430038 -86763626 + AT_rich Low_complexity Low_complexity 1 22 0 259 200 110 10 chr1 195430332 195430432 -86763232 - MER69 DNA AcHobo -56 2470 2361 771 196 120 0 chr1 195430432 195430590 -86763074 + FRAM SINE Alu 1 176 0 2165 208 83 19 chr1 195430638 195431273 -86762391 - MER69 DNA AcHobo -154 2372 1697 697 254 49 108 chr1 195431282 195431439 -86762225 - MER69 DNA AcHobo -1614 912 780 5643 104 26 18 chr1 195431439 195432256 -86761408 + L1MA2 LINE L1 5482 6304 0 697 254 49 108 chr1 195432256 195432405 -86761259 - MER69 DNA AcHobo -1746 780 624 747 252 63 0 chr1 195432418 195432624 -86761040 + MER69 DNA AcHobo 39 257 -969 1934 258 97 5 chr1 195432637 195433195 -86760469 - MER69 DNA AcHobo -1917 609 1 1273 125 9 161 chr1 195433336 195433672 -86759992 + LTR12 LTR ERV1 1 285 -429 357 163 19 35 chr1 195433673 195433775 -86759889 + LTR30 LTR ERV1 553 723 -71 547 163 11 0 chr1 195433775 195433867 -86759797 + LTR12 LTR ERV1 492 584 -130 45535 101 15 11 chr1 195433883 195440258 -86753406 + HERV9 LTR ERV1 54 6456 -1943 1804 114 30 0 chr1 195440258 195440521 -86753143 + HERV9 LTR ERV1 7628 7898 -501 * 2801 101 3 0 chr1 195440519 195440896 -86752768 + HERV9 LTR ERV1 8022 8399 0 238 200 0 20 chr1 195440896 195440946 -86752718 + LTR30 LTR ERV1 1 49 -673 1065 167 37 65 chr1 195440946 195441257 -86752407 + LTR12 LTR ERV1 51 2032 -406 332 167 59 88 chr1 195441259 195441361 -86752303 + LTR30 LTR ERV1 379 620 -92 551 178 0 0 chr1 195441361 195441451 -86752213 + LTR12 LTR ERV1 625 714 0 225 349 0 0 chr1 195441547 195441633 -86752031 - MER5B DNA MER1_type -3 175 90 2335 72 26 0 chr1 195441638 195441945 -86751719 + L1PA7 LINE L1 5710 6024 -130 5456 87 6 24 chr1 195441945 195442646 -86751018 + LTR12 LTR ERV1 1 688 0 8241 115 26 16 chr1 195442646 195444819 -86748845 + HERV17 LTR ERV1 1 2176 -6223 439 88 15 15 chr1 195444798 195444866 -86748798 + HERV9 LTR ERV1 1759 1826 -6573 * 7604 96 0 5 chr1 195444870 195445896 -86747768 + HERV9 LTR ERV1 2177 3197 -5202 * 9919 79 3 13 chr1 195445887 195447216 -86746448 + HERV9 LTR ERV1 7072 8387 -12 1147 45 22 0 chr1 195447216 195447228 -86746436 + L1PA7 LINE L1 6005 6015 -139 5488 76 13 26 chr1 195447228 195447925 -86745739 + LTR12 LTR ERV1 1 688 0 1147 45 22 0 chr1 195447925 195448046 -86745618 + L1PA7 LINE L1 6015 6141 -13 216 204 0 45 chr1 195448069 195448113 -86745551 - MER5B DNA MER1_type -129 49 8 234 276 0 0 chr1 195448284 195448342 -86745322 - MIR SINE MIR -3 259 202 324 0 0 0 chr1 195448348 195448384 -86745280 + (CA)n Simple_repeat Simple_repeat 1 36 0 548 200 7 76 chr1 195448596 195448741 -86744923 + MER20 DNA MER1_type 81 215 -4 399 303 96 10 chr1 195449217 195449415 -86744249 + MIR SINE MIR 20 234 -28 478 255 79 60 chr1 195449591 195449807 -86743857 - L2 LINE L2 0 3313 3094 21 0 0 0 chr1 195450337 195450358 -86743306 + AT_rich Low_complexity Low_complexity 1 21 0 1979 127 0 14 chr1 195451045 195451336 -86742328 + AluSx SINE Alu 17 303 -9 3591 212 46 75 chr1 195451336 195452656 -86741008 + MLT1A1-int LTR MaLR 462 1727 -8 1586 194 25 32 chr1 195452664 195453021 -86740643 + MLT1A1 LTR MaLR 1 428 0 558 304 16 0 chr1 195453449 195453633 -86740031 + MIR SINE MIR 75 261 -1 212 203 47 16 chr1 195453771 195453835 -86739829 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2451 195 37 18 chr1 195453887 195454400 -86739264 + Charlie1b DNA MER1_type 1 523 0 474 256 59 56 chr1 195455222 195455647 -86738017 - L1MEd LINE L1 -5117 1002 472 669 278 6 0 chr1 195455864 195456033 -86737631 - L1MEd LINE L1 -5946 173 4 2446 97 0 0 chr1 195456208 195456519 -86737145 - AluSq SINE Alu -2 311 1 249 83 0 0 chr1 195456770 195456806 -86736858 + (TC)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr1 195456909 195456939 -86736725 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 195457331 195457353 -86736311 + AT_rich Low_complexity Low_complexity 1 22 0 452 303 15 15 chr1 195457465 195457597 -86736067 + ERVL LTR ERVL 1967 2098 -3666 320 253 146 0 chr1 195457604 195457734 -86735930 + MIR SINE MIR 33 190 -61 21 36 0 0 chr1 195458256 195458284 -86735380 + AT_rich Low_complexity Low_complexity 1 28 0 1255 260 70 65 chr1 195459149 195459575 -86734089 - Charlie7 DNA MER1_type -1338 1274 843 775 206 8 0 chr1 195459575 195459706 -86733958 + FLAM_A SINE Alu 2 133 0 1255 260 70 65 chr1 195459706 195459890 -86733774 - Charlie7 DNA MER1_type -1769 843 661 2178 193 45 69 chr1 195459895 195460382 -86733282 + MLT2B1 LTR ERVL 1 475 -45 1154 53 29 0 chr1 195460382 195460552 -86733112 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 2178 193 45 69 chr1 195460552 195460597 -86733067 + MLT2B1 LTR ERVL 475 520 0 14849 210 24 44 chr1 195460624 195460845 -86732819 + ERVL-B1 LTR ERVL 22 246 -5518 392 0 21 0 chr1 195460845 195460893 -86732771 + (TA)n Simple_repeat Simple_repeat 1 49 0 14849 210 24 44 chr1 195460893 195461701 -86731963 + ERVL-B1 LTR ERVL 246 1069 -4695 1841 163 3 3 chr1 195461701 195461995 -86731669 + AluJo SINE Alu 1 294 -18 14849 210 24 44 chr1 195461995 195463891 -86729773 + ERVL-B1 LTR ERVL 1069 2885 -2879 2510 83 0 6 chr1 195463891 195464204 -86729460 - AluY SINE Alu 0 311 1 14849 210 24 44 chr1 195464204 195464390 -86729274 + ERVL-B1 LTR ERVL 2885 3073 -2691 7537 161 27 6 chr1 195464394 195465647 -86728017 + ERVL-B1 LTR ERVL 3279 4558 -1206 1860 230 148 14 chr1 195519480 195520055 -86673609 + L2 LINE L2 1895 2546 -768 674 283 189 0 chr1 195520060 195520357 -86673307 + L2 LINE L2 2960 3312 -1 861 102 31 0 chr1 195521302 195521430 -86672234 + AluSg/x SINE Alu 173 304 -6 2114 85 9 63 chr1 195521680 195521997 -86671667 + AluSg1 SINE Alu 1 300 -9 314 259 59 0 chr1 195522017 195522102 -86671562 - L1MC4 LINE L1 -1339 6703 6614 199 345 76 88 chr1 195522109 195522451 -86671213 + L2 LINE L2 2929 3266 -6 214 188 0 47 chr1 195522677 195522741 -86670923 + T-rich Low_complexity Low_complexity 5 65 0 727 291 97 29 chr1 195525015 195525496 -86668168 - L2 LINE L2 -61 3252 2730 1709 159 60 20 chr1 195527186 195527537 -86666127 - MLT1A1 LTR MaLR 0 365 1 2272 103 17 0 chr1 195527564 195527865 -86665799 - AluSg SINE Alu -4 306 1 710 168 32 8 chr1 195528113 195528238 -86665426 + FLAM_A SINE Alu 1 128 -5 663 205 79 33 chr1 195528789 195529111 -86664553 - Tigger3(Golem) DNA MER2_type -1 3028 1 313 301 115 22 chr1 195529794 195530020 -86663644 + MLT1K LTR MaLR 335 581 -7 249 341 34 0 chr1 195530136 195530224 -86663440 - MER5A DNA MER1_type -8 181 91 729 200 0 0 chr1 195530260 195530380 -86663284 - FLAM_A SINE Alu -13 120 1 289 315 25 31 chr1 195530684 195530846 -86662818 + MLT1J LTR MaLR 301 461 -50 3739 81 29 13 chr1 195531005 195531057 -86662607 + MER41A LTR ERV1 1 51 -503 3655 102 2 4 chr1 195531057 195531569 -86662095 + MER9 LTR ERVK 1 511 0 3739 81 29 13 chr1 195531569 195532060 -86661604 + MER41A LTR ERV1 51 553 -1 5037 124 71 23 chr1 195532231 195532842 -86660822 + MER41A-int LTR ERV1 1 581 -5365 2321 106 3 0 chr1 195532842 195533145 -86660519 - AluSq SINE Alu -9 304 1 5037 124 71 23 chr1 195533145 195534260 -86659404 + MER41A-int LTR ERV1 581 1993 -3953 12812 136 29 39 chr1 195534262 195537265 -86656399 + MER41A-int LTR ERV1 2167 5689 -257 2251 125 0 0 chr1 195537265 195537568 -86656096 - AluSg SINE Alu -7 303 1 12812 136 29 39 chr1 195537568 195537821 -86655843 + MER41A-int LTR ERV1 5689 5943 -3 312 93 0 0 chr1 195537821 195537864 -86655800 + MER41A LTR ERV1 1 43 -511 1768 136 4 8 chr1 195537992 195538256 -86655408 + AluSc SINE Alu 42 304 -5 522 291 73 36 chr1 195539539 195539814 -86653850 - Charlie8 DNA MER1_type -2132 285 1 231 352 209 0 chr1 195540237 195540342 -86653322 + L2 LINE L2 3119 3245 -27 619 286 16 16 chr1 195541739 195541924 -86651740 - MIR SINE MIR -60 202 18 432 254 93 83 chr1 195542472 195542665 -86650999 - MER91A DNA MER1_type 0 196 2 1496 166 34 106 chr1 195543447 195543466 -86650198 + MLT1B LTR MaLR 1 20 -370 207 0 0 0 chr1 195543466 195543489 -86650175 + (CA)n Simple_repeat Simple_repeat 1 23 0 1496 166 34 106 chr1 195543489 195543885 -86649779 + MLT1B LTR MaLR 20 386 -4 24 53 0 0 chr1 195544266 195544304 -86649360 + AT_rich Low_complexity Low_complexity 1 38 0 275 276 26 43 chr1 195544362 195544478 -86649186 - L3 LINE CR1 -193 1384 1271 2135 131 0 3 chr1 195545119 195545416 -86648248 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr1 195545484 195545513 -86648151 + AT_rich Low_complexity Low_complexity 1 29 0 13586 114 11 7 chr1 195546283 195546981 -86646683 - L1PA8 LINE L1 -9 6163 5469 2310 101 10 0 chr1 195546981 195547287 -86646377 - AluSc SINE Alu 0 309 1 13586 114 11 7 chr1 195547287 195549502 -86644162 - L1PA8 LINE L1 -703 5469 3265 12661 170 17 26 chr1 195549603 195551970 -86641694 - L1PA8 LINE L1 -2827 3319 976 189 74 0 0 chr1 195551970 195551997 -86641667 + (TTG)n Simple_repeat Simple_repeat 1 27 0 12661 170 17 26 chr1 195551997 195552300 -86641364 - L1PA8 LINE L1 -5170 976 672 6053 77 8 1 chr1 195552429 195553278 -86640386 - L1PA13 LINE L1 -5 6158 5304 445 246 124 38 chr1 195553315 195553537 -86640127 - MIR SINE MIR -1 261 20 2275 100 3 13 chr1 195554091 195554392 -86639272 + AluSg SINE Alu 1 298 -12 1121 198 86 149 chr1 195554993 195555659 -86638005 + MLT1E2 LTR MaLR 1 626 0 422 261 35 28 chr1 195555832 195555974 -86637690 + MIR SINE MIR 3 145 -117 1702 127 34 30 chr1 195555979 195556246 -86637418 + AluSx SINE Alu 1 268 -44 278 28 0 0 chr1 195556247 195556283 -86637381 - AluYa5/8 SINE Alu -36 264 229 1316 135 16 0 chr1 195556283 195556475 -86637189 - AluSg SINE Alu -115 195 1 470 158 104 120 chr1 195556517 195556700 -86636964 + L2 LINE L2 3119 3298 -15 210 71 0 0 chr1 195556703 195556731 -86636933 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 261 57 0 0 chr1 195557015 195557050 -86636614 + (TC)n Simple_repeat Simple_repeat 2 36 0 254 167 17 0 chr1 195557590 195557650 -86636014 + (TA)n Simple_repeat Simple_repeat 1 61 0 207 0 0 0 chr1 195557998 195558021 -86635643 + (A)n Simple_repeat Simple_repeat 1 23 0 2167 38 22 95 chr1 195558030 195558347 -86635317 + AluY SINE Alu 1 294 -17 280 360 43 12 chr1 195558380 195558541 -86635123 - L2 LINE L2 -219 3053 2888 1105 209 39 4 chr1 195558573 195558831 -86634833 - ORSL DNA AcHobo 0 275 9 1383 218 113 71 chr1 195558835 195559202 -86634462 + L2 LINE L2 2812 3205 -108 2427 97 0 0 chr1 195559202 195559513 -86634151 + AluSx SINE Alu 2 312 0 1383 218 113 71 chr1 195559513 195559623 -86634041 + L2 LINE L2 3205 3309 -4 338 129 0 0 chr1 195560232 195560294 -86633370 + L1MC3 LINE L1 7540 7601 -184 240 354 97 0 chr1 195561486 195561599 -86632065 + L2 LINE L2 3149 3272 0 565 272 231 5 chr1 195561618 195561813 -86631851 + MIR SINE MIR 7 245 -17 185 311 0 0 chr1 195562164 195562209 -86631455 - L2 LINE L2 -18 3254 3210 211 184 41 41 chr1 195562627 195562676 -86630988 + L2 LINE L2 3265 3313 0 2139 139 3 0 chr1 195562953 195563256 -86630408 - AluSx SINE Alu -8 304 1 265 226 0 0 chr1 195563668 195563721 -86629943 - L2 LINE L2 -2 3311 3259 413 198 19 38 chr1 195565324 195565430 -86628234 + LTR56 LTR ERV1 1 104 -341 733 269 33 0 chr1 195566230 195566412 -86627252 + MER5A DNA MER1_type 1 188 -1 266 308 103 0 chr1 195566563 195566641 -86627023 + MIR3 SINE MIR 106 191 -17 536 276 6 26 chr1 195566661 195566817 -86626847 + MIR SINE MIR 2 154 -108 360 283 0 0 chr1 195567246 195567338 -86626326 + MIR SINE MIR 157 248 -14 2360 143 66 14 chr1 195567441 195567867 -86625797 + MER83 LTR ERV1 1 448 0 22 0 0 0 chr1 195567933 195567955 -86625709 + AT_rich Low_complexity Low_complexity 1 22 0 497 195 0 0 chr1 195568789 195568876 -86624788 - L2 LINE L2 0 3313 3227 847 179 0 8 chr1 195568876 195569010 -86624654 + FLAM_C SINE Alu 1 133 -10 420 250 4 119 chr1 195569049 195569285 -86624379 - L2 LINE L2 -157 3156 2948 1777 144 6 64 chr1 195569361 195569688 -86623976 - AluJo SINE Alu -3 309 2 188 214 18 0 chr1 195572882 195572938 -86620726 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 1858 114 66 7 chr1 195573407 195573678 -86619986 + AluSx SINE Alu 1 287 -25 344 218 11 0 chr1 195573680 195573767 -86619897 + (TA)n Simple_repeat Simple_repeat 1 88 0 401 345 138 54 chr1 195574530 195574956 -86618708 - L2 LINE L2 0 3272 2811 622 170 14 54 chr1 195575091 195575238 -86618426 - MER103 DNA DNA -23 143 3 317 327 231 21 chr1 195575317 195575931 -86617733 - L2 LINE L2 -557 2757 2015 1047 270 59 50 chr1 195575987 195576531 -86617133 + MLT1H LTR MaLR 1 549 0 24692 56 2 2 chr1 195577007 195581129 -86612535 + L1PA6 LINE L1 2028 6152 -2 267 338 76 27 chr1 195581542 195581870 -86611794 + MLT1K-int LTR MaLR 1028 1371 0 324 253 11 0 chr1 195581870 195581961 -86611703 + MLT1K LTR MaLR 1 92 -463 723 253 43 35 chr1 195581999 195582263 -86611401 - MLT1H LTR MaLR -239 310 2 716 204 0 0 chr1 195582363 195582495 -86611169 + FLAM_C SINE Alu 2 133 0 1393 147 0 14 chr1 195582504 195582722 -86610942 + AluSg/x SINE Alu 98 312 0 1051 219 91 38 chr1 195582727 195583179 -86610485 + L1MC5 LINE L1 7453 7928 -33 262 233 167 50 chr1 195584956 195585076 -86608588 - MER5A DNA MER1_type -6 183 50 * 309 289 133 0 chr1 195585002 195585092 -86608572 + MER5A DNA MER1_type 65 166 -23 993 216 0 11 chr1 195586233 195586418 -86607246 + AluJo SINE Alu 1 183 -129 1815 143 29 0 chr1 195586595 195586909 -86606755 + MER47A DNA MER2_type 44 366 0 190 315 153 18 chr1 195588370 195588481 -86605183 + L2 LINE L2 3136 3261 -11 687 319 21 0 chr1 195588710 195588901 -86604763 - MER91A DNA MER1_type -1 195 1 316 219 95 83 chr1 195589647 195590038 -86603626 + LTR4 LTR ERV1 112 587 0 368 313 61 30 chr1 195591427 195591657 -86602007 + MLT1K LTR MaLR 143 379 -209 1665 202 179 33 chr1 195592242 195592756 -86600908 - MLT1G1 LTR MaLR -6 589 1 272 319 60 66 chr1 195593778 195593944 -86599720 - L2 LINE L2 -77 3195 3031 920 229 112 27 chr1 195594430 195594553 -86599111 + AluJo SINE Alu 1 112 -200 2216 113 7 3 chr1 195594553 195594862 -86598802 - AluSx SINE Alu -2 310 1 920 229 112 27 chr1 195594862 195594996 -86598668 + AluJo SINE Alu 112 280 -32 219 186 0 0 chr1 195595053 195595096 -86598568 + G-rich Low_complexity Low_complexity 5 47 0 748 202 150 0 chr1 195595154 195595352 -86598312 - MLT1G1 LTR MaLR -389 206 1 2247 96 0 0 chr1 195595592 195595925 -86597739 - AluSc SINE Alu 0 333 1 457 132 231 0 chr1 195595966 195596057 -86597607 + FLAM_A SINE Alu 1 112 -30 411 21 0 0 chr1 195596058 195596106 -86597558 + (GA)n Simple_repeat Simple_repeat 1 48 0 276 100 0 0 chr1 195596107 195596147 -86597517 + (GGGGA)n Simple_repeat Simple_repeat 2 41 0 15114 120 18 20 chr1 195596589 195599012 -86594652 + Tigger1 DNA MER2_type 1 2418 0 1101 232 104 65 chr1 195599292 195599784 -86593880 + MLT1J LTR MaLR 1 511 0 256 302 9 38 chr1 195600532 195600638 -86593026 + MIR SINE MIR 63 165 -97 314 269 96 10 chr1 195600638 195600742 -86592922 - MER5A DNA MER1_type 0 189 77 2131 120 0 43 chr1 195601829 195602153 -86591511 + AluSx SINE Alu 3 312 0 283 346 27 1 chr1 195602218 195602340 -86591324 - MIR SINE MIR -58 150 28 21 0 0 0 chr1 195602783 195602804 -86590860 + AT_rich Low_complexity Low_complexity 1 21 0 816 228 53 44 chr1 195603636 195603864 -86589800 + MIR SINE MIR 20 249 -13 393 250 0 109 chr1 195604098 195604254 -86589410 + MIR SINE MIR 65 203 -59 568 265 114 48 chr1 195605455 195605881 -86587783 + LTR16A LTR ERVL 1 449 -1 2241 111 3 13 chr1 195605976 195606291 -86587373 - AluSx SINE Alu 0 312 1 232 225 79 34 chr1 195606336 195606425 -86587239 + L2 LINE L2 3152 3244 -69 330 45 0 0 chr1 195607038 195607082 -86586582 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 57 0 0 chr1 195607597 195607632 -86586032 + AT_rich Low_complexity Low_complexity 1 35 0 261 167 0 0 chr1 195607861 195607909 -86585755 - L1MA10 LINE L1 -28 6306 6259 202 265 185 52 chr1 195607982 195608193 -86585471 - L2 LINE L2 0 3313 3075 6738 101 16 4 chr1 195608760 195609820 -86583844 - L1MA2 LINE L1 0 7723 6651 2586 68 0 0 chr1 195609822 195610132 -86583532 - AluY SINE Alu -1 310 1 1346 84 0 0 chr1 195610151 195610317 -86583347 - AluSg/x SINE Alu 0 312 147 3613 179 3 1 chr1 195610332 195611057 -86582607 - L1MA2 LINE L1 -922 6643 5918 8073 142 17 65 chr1 195611068 195613321 -86580343 - L1MA2 LINE L1 -2190 5375 3270 4209 93 2 3 chr1 195613321 195613903 -86579761 - L1PA14 LINE L1 -3 6158 5578 8073 142 17 65 chr1 195613903 195614373 -86579291 - L1MA2 LINE L1 -4295 3270 2779 1066 76 6 0 chr1 195614372 195614529 -86579135 - L1MA2 LINE L1 -5113 2452 2295 * 2250 105 42 0 chr1 195614526 195614906 -86578758 - L1M1 LINE L1 -4789 2776 2381 532 128 0 0 chr1 195614915 195615001 -86578663 + FLAM_C SINE Alu 53 138 -5 6785 151 114 19 chr1 195615009 195616336 -86577328 - L1M1 LINE L1 -6095 1470 17 1295 272 72 42 chr1 195616503 195616978 -86576686 + L2 LINE L2 2824 3312 -1 738 223 48 5 chr1 195617133 195617321 -86576343 - MIR SINE MIR -3 259 64 289 328 128 26 chr1 195617747 195617942 -86575722 + MIR SINE MIR 21 235 -27 536 309 39 11 chr1 195618024 195618202 -86575462 - MER5A DNA MER1_type 0 189 7 318 321 82 22 chr1 195618171 195618305 -86575359 - MIR3 SINE MIR -59 149 8 * 260 343 52 35 chr1 195618951 195619123 -86574541 + L2 LINE L2 2925 3099 -173 211 279 87 58 chr1 195619139 195619243 -86574421 - MER5A DNA MER1_type -2 187 81 2597 56 0 3 chr1 195619698 195620002 -86573662 - AluY SINE Alu -8 303 1 1752 181 0 3 chr1 195620033 195620320 -86573344 + AluJb SINE Alu 5 290 -22 2459 62 0 7 chr1 195620763 195621070 -86572594 - AluY SINE Alu -6 305 1 22 0 0 0 chr1 195621200 195621222 -86572442 + AT_rich Low_complexity Low_complexity 1 22 0 1312 172 169 0 chr1 195622107 195622397 -86571267 - MER58B DNA MER1_type -2 339 1 266 256 96 24 chr1 195622785 195622910 -86570754 + MIR SINE MIR 79 212 -50 698 212 12 6 chr1 195623191 195623356 -86570308 + MER97a DNA MER1_type? 13 178 -716 514 216 0 0 chr1 195623442 195623553 -86570111 + Tigger8 DNA MER2_type 371 481 -185 2079 154 103 12 chr1 195623737 195624165 -86569499 - MLT1C LTR MaLR 0 467 1 483 191 114 0 chr1 195624537 195624642 -86569022 - MER63A DNA MER1_type 0 117 1 223 200 63 11 chr1 195624643 195624709 -86568955 - MIR3 SINE MIR -50 158 87 229 108 27 0 chr1 195625211 195625248 -86568416 + MER63A DNA MER1_type 1 38 -172 544 254 35 7 chr1 195625335 195625477 -86568187 + MER63A DNA MER1_type 62 207 -3 615 256 11 45 chr1 195625499 195625550 -86568114 - MIR SINE MIR -65 197 146 2173 121 0 3 chr1 195625550 195625847 -86567817 - AluSx SINE Alu -16 296 1 615 256 11 45 chr1 195625847 195625971 -86567693 - MIR SINE MIR -116 146 28 210 282 65 57 chr1 195625989 195626113 -86567551 - L2 LINE L2 -5 3308 3184 208 296 42 0 chr1 195626640 195626711 -86566953 - MIR3 SINE MIR -4 204 131 1186 172 82 26 chr1 195628243 195628546 -86565118 + MER2 DNA MER2_type 1 320 -25 208 296 0 0 chr1 195628876 195628930 -86564734 + GA-rich Low_complexity Low_complexity 2 55 0 1850 163 21 19 chr1 195629168 195629543 -86564121 + L1MB7 LINE L1 5616 5991 -193 726 217 25 0 chr1 195629565 195629726 -86563938 - L1MEc LINE L1 -4640 1756 1592 644 238 91 19 chr1 195629735 195630097 -86563567 - L1MEc LINE L1 -4893 1503 1116 214 239 80 88 chr1 195630459 195630572 -86563092 + MER91B DNA MER1_type 18 129 -61 225 250 18 0 chr1 195630626 195630682 -86562982 + MER91B DNA MER1_type 117 173 -17 21 0 0 0 chr1 195630806 195630827 -86562837 + AT_rich Low_complexity Low_complexity 1 21 0 2258 119 0 3 chr1 195630879 195631189 -86562475 + AluSx SINE Alu 1 309 -3 4038 67 2 2 chr1 195631694 195632188 -86561476 + L1PA8A LINE L1 5613 6109 -22 207 0 0 0 chr1 195632188 195632211 -86561453 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4038 67 2 2 chr1 195632211 195632235 -86561429 + L1PA8A LINE L1 6108 6131 0 316 228 76 0 chr1 195633621 195633700 -86559964 - HAL1 LINE L1 -1319 1188 1104 439 296 65 41 chr1 195633700 195633986 -86559678 - L1M4 LINE L1 -2230 3916 3613 1706 182 3 17 chr1 195633986 195634283 -86559381 + AluJo SINE Alu 1 293 -19 439 296 65 41 chr1 195634283 195634455 -86559209 - L1M4 LINE L1 -2533 3613 3447 1706 184 0 10 chr1 195634469 195634763 -86558901 + AluJo SINE Alu 1 291 -21 330 254 22 14 chr1 195634851 195634989 -86558675 + L1M4 LINE L1 2923 3061 -3085 370 275 112 27 chr1 195634999 195635155 -86558509 + L1MEd LINE L1 970 1158 -4961 2189 126 0 0 chr1 195635155 195635457 -86558207 + AluSx SINE Alu 1 302 -10 370 275 112 27 chr1 195635457 195635558 -86558106 + L1MEd LINE L1 1158 1249 -4870 2838 138 15 10 chr1 195635609 195636089 -86557575 - MER44D DNA MER2_type -1 604 68 5888 178 23 4 chr1 195636101 195638034 -86555630 - L1PA14 LINE L1 -10 6151 4168 3464 201 0 18 chr1 195638036 195638434 -86555230 + L1P LINE L1 1750 2129 -4017 2184 116 0 0 chr1 195638434 195638718 -86554946 + AluSg SINE Alu 1 284 -26 3464 201 0 18 chr1 195638718 195639089 -86554575 + L1P LINE L1 2129 2505 -3641 345 175 0 165 chr1 195639089 195639186 -86554478 - MER44D DNA MER2_type -624 81 1 1569 107 40 0 chr1 195639390 195639643 -86554021 + L1MA5A LINE L1 6030 6292 -5 26 30 0 0 chr1 195639956 195639989 -86553675 + AT_rich Low_complexity Low_complexity 1 33 0 1841 122 79 7 chr1 195640089 195640367 -86553297 - AluSg SINE Alu -7 303 6 241 298 46 97 chr1 195640402 195640815 -86552849 - MLT1J LTR MaLR -118 393 2 346 277 48 0 chr1 195640962 195640984 -86552680 - L1MA10 LINE L1 0 6334 6313 3299 213 31 15 chr1 195640984 195641795 -86551869 - L1ME1 LINE L1 -18 6148 5325 647 257 182 16 chr1 195641813 195642650 -86551014 + L1MEd LINE L1 2121 3096 -3033 236 228 217 11 chr1 195642770 195642862 -86550802 + MIR SINE MIR 37 147 -115 558 184 22 151 chr1 195643836 195644021 -86549643 + MIR SINE MIR 100 260 -2 1006 35 0 0 chr1 195644321 195644435 -86549229 - AluYa5/8 SINE Alu -20 291 178 1934 60 0 4 chr1 195644559 195644792 -86548872 - AluY SINE Alu 0 311 80 1843 167 13 0 chr1 195644800 195645100 -86548564 - AluSx SINE Alu -8 304 1 228 143 24 0 chr1 195645414 195645456 -86548208 - Tigger5 DNA MER2_type -238 2085 2043 814 150 0 19 chr1 195645571 195645731 -86547933 + (GGGGA)n Simple_repeat Simple_repeat 4 160 0 343 294 119 8 chr1 195647183 195647309 -86546355 + MIR3 SINE MIR 59 198 -10 735 137 0 0 chr1 195647447 195647549 -86546115 + FLAM_A SINE Alu 25 126 -16 1370 192 27 7 chr1 195648267 195648316 -86545348 + L1MB7 LINE L1 4925 4972 -1182 417 39 0 0 chr1 195648316 195648367 -86545297 + (CA)n Simple_repeat Simple_repeat 2 52 0 1370 192 27 7 chr1 195648367 195648697 -86544967 + L1MB7 LINE L1 4972 5313 -841 1960 161 0 3 chr1 195648707 195649012 -86544652 + AluJb SINE Alu 1 304 -8 696 56 0 0 chr1 195649019 195649108 -86544556 + (GGAA)n Simple_repeat Simple_repeat 4 92 0 801 138 30 36 chr1 195649147 195649314 -86544350 + L1MB7 LINE L1 5319 5484 -690 6103 68 14 26 chr1 195649318 195651048 -86542616 + SVA Other Other 11 1402 0 1560 204 114 46 chr1 195651310 195651529 -86542135 - MER82 DNA MER2_type -16 637 434 1815 155 7 26 chr1 195651529 195651865 -86541799 - AluSx SINE Alu 0 312 1 1560 204 114 46 chr1 195651865 195651894 -86541770 - MER82 DNA MER2_type -219 434 408 1955 93 4 4 chr1 195651894 195652151 -86541513 + AluSc SINE Alu 44 300 -9 1560 204 114 46 chr1 195652151 195652338 -86541326 - MER82 DNA MER2_type -245 408 171 1435 169 191 32 chr1 195652342 195652568 -86541096 + L1MB7 LINE L1 5484 5673 -511 2425 75 0 0 chr1 195652568 195652862 -86540802 + AluY SINE Alu 1 294 -17 1435 169 191 32 chr1 195652862 195653043 -86540621 + L1MB7 LINE L1 5673 5956 -228 1409 151 24 0 chr1 195653094 195653345 -86540319 + L1MB7 LINE L1 5928 6184 0 9861 219 12 45 chr1 195653487 195656292 -86537372 + L1PA11 LINE L1 12 2679 -3782 2167 138 0 0 chr1 195656292 195656597 -86537067 + AluSx SINE Alu 1 305 -7 9861 219 12 45 chr1 195656597 195657306 -86536358 + L1PA11 LINE L1 2679 3410 -3051 1616 5 38 0 chr1 195657314 195657489 -86536175 + L1PA3 LINE L1 5950 6141 -14 * 13617 136 17 22 chr1 195657468 195659779 -86533885 + L1PA11 LINE L1 3370 5685 -804 1810 131 35 14 chr1 195659779 195660069 -86533595 + AluSx SINE Alu 1 296 -16 13617 136 17 22 chr1 195660069 195660870 -86532794 + L1PA11 LINE L1 5685 6488 -1 1584 202 19 19 chr1 195660956 195661263 -86532401 + AluJo SINE Alu 1 307 -5 1252 164 5 0 chr1 195661742 195661950 -86531714 + MER3 DNA MER1_type 1 209 0 23 33 0 0 chr1 195662693 195662723 -86530941 + AT_rich Low_complexity Low_complexity 1 30 0 213 127 16 48 chr1 195663653 195663716 -86529948 + GA-rich Low_complexity Low_complexity 3 63 0 22426 147 22 15 chr1 195663949 195667312 -86526352 + L1M1 LINE L1 17 3356 -4260 1915 112 104 0 chr1 195667312 195667590 -86526074 + AluSx SINE Alu 1 307 -5 22426 147 22 15 chr1 195667590 195671036 -86522628 + L1M1 LINE L1 3356 6873 -743 545 239 28 49 chr1 195671080 195671222 -86522442 + L2 LINE L2 3172 3310 -3 26 64 0 0 chr1 195671456 195671503 -86522161 + AT_rich Low_complexity Low_complexity 1 47 0 325 254 15 0 chr1 195672712 195672779 -86520885 + L2 LINE L2 3197 3264 -8 257 217 120 33 chr1 195672883 195672975 -86520689 + MIR3 SINE MIR 82 181 -27 3298 112 30 11 chr1 195673995 195674569 -86519095 + LTR10C LTR ERV1 1 505 0 596 288 48 19 chr1 195674569 195674840 -86518824 + HERVI LTR ERV1 2 280 -7505 189 0 0 0 chr1 195674840 195674861 -86518803 + (TG)n Simple_repeat Simple_repeat 1 21 0 260 262 22 98 chr1 195674959 195675142 -86518522 + HERVI LTR ERV1 544 712 -5937 2695 145 13 107 chr1 195675362 195675977 -86517687 + HERVI LTR ERV1 3943 4499 -3286 301 126 114 6 chr1 195676095 195676262 -86517402 - Harlequin LTR ERV1 -5872 1024 840 9302 202 33 21 chr1 195676262 195678420 -86515244 - Harlequin LTR ERV1 -5198 2587 499 797 208 48 65 chr1 195678487 195678781 -86514883 - Harlequin LTR ERV1 -6360 289 1 1341 219 90 69 chr1 195678790 195678882 -86514782 - LTR10A LTR ERV1 -61 548 459 2349 68 0 7 chr1 195678882 195679177 -86514487 + AluY SINE Alu 11 303 -8 1341 219 90 69 chr1 195679177 195679608 -86514056 - LTR10A LTR ERV1 -150 459 14 8666 256 58 38 chr1 195679719 195682867 -86510797 + HERVI LTR ERV1 4572 7783 -2 3252 120 16 15 chr1 195682871 195683453 -86510211 + LTR10C LTR ERV1 1 505 0 2164 118 3 0 chr1 195683589 195683886 -86509778 - AluSg SINE Alu -10 300 3 24 103 0 0 chr1 195683957 195684044 -86509620 + AT_rich Low_complexity Low_complexity 1 87 0 2217 121 7 0 chr1 195685130 195685428 -86508236 + AluSq SINE Alu 1 300 -13 787 262 23 23 chr1 195685832 195686046 -86507618 - MIR SINE MIR 0 262 49 709 184 179 0 chr1 195686635 195686831 -86506833 - L1ME3A LINE L1 0 6170 5940 724 303 35 9 chr1 195687519 195687750 -86505914 - MIR SINE MIR -16 246 10 1684 156 21 21 chr1 195688216 195688367 -86505297 - AluJo SINE Alu -24 288 135 2118 115 10 0 chr1 195688367 195688655 -86505009 - AluSc SINE Alu -18 291 1 1684 156 21 21 chr1 195688655 195688791 -86504873 - AluJo SINE Alu -176 136 1 446 182 40 0 chr1 195688935 195689034 -86504630 - MLT1-int LTR MaLR -837 534 432 779 211 13 13 chr1 195689262 195689418 -86504246 - MIR SINE MIR -102 160 5 682 290 100 16 chr1 195689447 195690013 -86503651 - L1ME3A LINE L1 -296 5868 5245 268 293 23 15 chr1 195690189 195690322 -86503342 - L1ME3A LINE L1 -1131 5015 4882 36261 85 11 8 chr1 195690526 195696653 -86497011 - L1PA6 LINE L1 -3 6151 12 588 200 17 0 chr1 195696914 195697089 -86496575 + GA-rich Low_complexity Low_complexity 2 179 0 3026 114 61 36 chr1 195697108 195697944 -86495720 + Harlequin LTR ERV1 864 4405 -3380 830 63 8 16 chr1 195697921 195698048 -86495616 + Harlequin LTR ERV1 1584 1709 -5187 * 317 213 175 0 chr1 195698054 195698134 -86495530 - LTR8 LTR ERV1 -438 253 160 11182 157 11 22 chr1 195698135 195701312 -86492352 + Harlequin LTR ERV1 1806 6645 -4 1587 212 97 39 chr1 195701315 195701833 -86491831 + LTR10A LTR ERV1 1 548 -61 803 118 0 0 chr1 195701845 195701964 -86491700 + MER4A LTR ERV1 546 664 0 3099 89 182 6 chr1 195701967 195702162 -86491502 + MER4A-int LTR ERV1 1 160 -6438 207 0 0 0 chr1 195702162 195702185 -86491479 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3099 89 182 6 chr1 195702185 195702630 -86491034 + MER4A-int LTR ERV1 160 820 -5778 393 94 0 76 chr1 195702634 195702777 -86490887 + MER4A-int LTR ERV1 687 886 -5712 5100 133 78 37 chr1 195702783 195702894 -86490770 + MER4A-int LTR ERV1 1161 1266 -5332 351 0 0 0 chr1 195702894 195702933 -86490731 + (TG)n Simple_repeat Simple_repeat 2 40 0 5100 133 78 37 chr1 195702933 195703553 -86490111 + MER4A-int LTR ERV1 1266 1851 -4747 2379 98 0 0 chr1 195703553 195703848 -86489816 - AluSc SINE Alu -14 295 1 5100 133 78 37 chr1 195703848 195704294 -86489370 + MER4A-int LTR ERV1 1851 2277 -4321 1113 161 37 79 chr1 195704314 195704487 -86489177 + MER4A-int LTR ERV1 3343 3522 -3076 3307 75 10 38 chr1 195704487 195704967 -86488697 - L1PA7 LINE L1 -13 6141 5675 * 12926 86 19 1 chr1 195704966 195707529 -86486135 - L1PA8 LINE L1 -3 6169 3507 1113 161 37 79 chr1 195704967 195707709 -86485955 + MER4A-int LTR ERV1 3522 3681 -2917 * 15271 95 47 45 chr1 195707707 195708764 -86484900 + MER4A-int LTR ERV1 3836 4890 -1708 321 78 20 0 chr1 195708764 195708815 -86484849 - Alu SINE Alu -1 299 248 15271 95 47 45 chr1 195708815 195709985 -86483679 + MER4A-int LTR ERV1 4890 6121 -477 2083 139 0 3 chr1 195709985 195710287 -86483377 - AluSx SINE Alu -11 301 1 15271 95 47 45 chr1 195710287 195710766 -86482898 + MER4A-int LTR ERV1 6121 6598 0 597 113 21 10 chr1 195710767 195710864 -86482800 + MER4A LTR ERV1 1 98 -566 1460 116 3 110 chr1 195710864 195711237 -86482427 + MER4A LTR ERV1 261 664 0 1888 161 0 16 chr1 195711304 195711608 -86482056 + AluJb SINE Alu 1 299 -13 590 251 89 77 chr1 195711848 195712083 -86481581 + MIR SINE MIR 7 244 -18 2233 113 0 7 chr1 195712205 195712506 -86481158 + AluSx SINE Alu 1 299 -13 2572 149 29 21 chr1 195713489 195713716 -86479948 - MER50 LTR ERV1 -23 711 487 2232 86 0 38 chr1 195713716 195714029 -86479635 - AluY SINE Alu -10 301 1 2572 149 29 21 chr1 195714029 195714284 -86479380 - MER50 LTR ERV1 -247 487 225 1240 129 78 4 chr1 195714755 195714987 -86478677 - MER50 LTR ERV1 -485 249 1 207 295 78 115 chr1 195716258 195716580 -86477084 + L2 LINE L2 2894 3203 -69 2846 143 63 94 chr1 195717424 195717886 -86475778 - Charlie1 DNA MER1_type -5 2756 2330 2072 129 0 16 chr1 195717886 195718196 -86475468 - AluSg SINE Alu -5 305 1 2846 143 63 94 chr1 195718196 195718569 -86475095 - Charlie1 DNA MER1_type -431 2330 1947 1774 147 32 11 chr1 195718571 195718856 -86474808 + AluJo SINE Alu 1 291 -21 268 139 0 0 chr1 195718877 195718920 -86474744 - MLT2B1 LTR ERVL -7 513 471 1873 137 19 22 chr1 195718923 195719244 -86474420 - MER2 DNA MER2_type -25 320 1 1032 217 141 8 chr1 195719244 195719507 -86474157 - MLT2B1 LTR ERVL -41 479 182 724 141 131 30 chr1 195719507 195719583 -86474081 + Charlie1 DNA MER1_type 2543 2610 -151 1927 159 0 16 chr1 195719583 195719891 -86473773 - AluJo SINE Alu -9 303 1 724 141 131 30 chr1 195719891 195720013 -86473651 + Charlie1 DNA MER1_type 2610 2761 0 458 139 0 245 chr1 195720278 195720429 -86473235 + FLAM_A SINE Alu 1 114 -19 180 0 0 0 chr1 195720430 195720450 -86473214 + (TTG)n Simple_repeat Simple_repeat 2 21 0 358 289 213 20 chr1 195720557 195720754 -86472910 - MIR SINE MIR -13 249 15 424 202 62 39 chr1 195721300 195721429 -86472235 + MER94 DNA DNA 1 132 -2 367 246 101 22 chr1 195721524 195721662 -86472002 - MER112 DNA MER1_type -9 251 103 276 298 29 10 chr1 195721951 195722055 -86471609 - MLT1J LTR MaLR -310 201 96 342 0 0 0 chr1 195722525 195722563 -86471101 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 225 0 0 chr1 195722620 195722660 -86471004 + MIR3 SINE MIR 130 169 -39 853 200 76 0 chr1 195723404 195723589 -86470075 + MER58A DNA MER1_type 4 202 -22 1774 243 101 21 chr1 195723845 195724365 -86469299 - MLT1E LTR MaLR -34 547 1 324 193 114 50 chr1 195724370 195724510 -86469154 - L1M4 LINE L1 -339 5835 5687 458 238 0 0 chr1 195724604 195724705 -86468959 + U13 snRNA snRNA 1 101 -3 200 204 0 0 chr1 195725438 195725482 -86468182 + GA-rich Low_complexity Low_complexity 2 45 0 255 203 0 34 chr1 195725816 195725875 -86467789 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 659 277 16 32 chr1 195725913 195726101 -86467563 + MIR SINE MIR 63 247 -15 507 293 95 19 chr1 195726261 195726452 -86467212 + L1M4 LINE L1 2676 2851 -3295 2112 135 3 3 chr1 195726452 195726763 -86466901 - AluSx SINE Alu -1 311 1 507 293 95 19 chr1 195726763 195727035 -86466629 + L1M4 LINE L1 2851 3174 -2972 774 196 0 0 chr1 195727042 195727175 -86466489 + FLAM_C SINE Alu 1 133 0 2156 133 0 3 chr1 195727310 195727618 -86466046 - AluSx SINE Alu -3 309 3 40945 45 8 1 chr1 195777956 195784064 -86409600 + L1PA4 LINE L1 5 6152 -3 34 0 0 0 chr1 195784065 195784099 -86409565 + AT_rich Low_complexity Low_complexity 1 34 0 2236 98 0 7 chr1 195784107 195784402 -86409262 + AluSc SINE Alu 1 293 -16 570 163 101 39 chr1 195784405 195784534 -86409130 + FLAM_A SINE Alu 6 142 0 1886 150 38 7 chr1 195785213 195785506 -86408158 - AluSx SINE Alu -10 302 1 829 196 0 0 chr1 195785657 195785790 -86407874 + FLAM_C SINE Alu 1 133 -10 24 0 0 0 chr1 195786706 195786730 -86406934 + AT_rich Low_complexity Low_complexity 1 24 0 514 261 75 53 chr1 195786939 195787127 -86406537 - L2 LINE L2 -2 3311 3120 349 358 34 56 chr1 195787179 195787355 -86406309 - L2 LINE L2 -361 2953 2784 2041 131 0 16 chr1 195787355 195787660 -86406004 + AluJb SINE Alu 1 300 -12 349 358 34 56 chr1 195787660 195787751 -86405913 - L2 LINE L2 -530 2784 2692 10211 161 16 34 chr1 195787809 195788128 -86405536 - L1PB1 LINE L1 -12 6855 6532 2139 114 0 41 chr1 195788128 195788445 -86405219 - AluSx SINE Alu -8 304 1 10211 161 16 34 chr1 195788445 195788785 -86404879 - L1PB1 LINE L1 -335 6532 6187 2451 76 0 7 chr1 195788785 195789087 -86404577 - AluSx SINE Alu -12 300 1 10211 161 16 34 chr1 195789087 195790438 -86403226 - L1PB1 LINE L1 -680 6187 4813 1471 148 0 5 chr1 195790438 195790661 -86403003 - AluJb SINE Alu -90 222 1 10211 161 16 34 chr1 195790661 195791272 -86402392 - L1PB1 LINE L1 -2054 4813 4193 1949 134 7 3 chr1 195791272 195791563 -86402101 - AluSx SINE Alu -20 292 1 10211 161 16 34 chr1 195791563 195791838 -86401826 - L1PB1 LINE L1 -2674 4193 3915 2273 82 41 3 chr1 195791838 195792131 -86401533 - AluSq SINE Alu -9 304 1 10211 161 16 34 chr1 195792131 195792303 -86401361 - L1PB1 LINE L1 -2952 3915 3741 2318 67 40 7 chr1 195792303 195792600 -86401064 - AluY SINE Alu -4 307 1 10211 161 16 34 chr1 195792600 195792916 -86400748 - L1PB1 LINE L1 -3126 3741 3531 3432 122 72 5 chr1 195792915 195793528 -86400136 - L1PB1 LINE L1 -6207 656 3 * 462 325 24 29 chr1 195793586 195793832 -86399832 + L1MC4 LINE L1 4994 5238 -908 926 251 129 18 chr1 195794248 195794574 -86399090 + L1MC4 LINE L1 5299 5660 -2148 243 296 23 0 chr1 195794787 195794875 -86398789 + L1MC4 LINE L1 6614 6703 -1339 336 248 0 0 chr1 195794877 195794978 -86398686 + (TA)n Simple_repeat Simple_repeat 2 102 0 412 261 72 69 chr1 195795092 195795432 -86398232 + L1MC/D LINE L1 5127 5471 -743 523 278 30 5 chr1 195795443 195795641 -86398023 - L1MC4 LINE L1 -2 8040 7838 377 210 171 45 chr1 195795699 195795875 -86397789 - L1MC4 LINE L1 -851 7191 6994 2140 282 107 51 chr1 195795879 195797350 -86396314 - L1MC4 LINE L1 -747 5399 4012 2188 116 30 0 chr1 195797350 195797653 -86396011 - AluSx SINE Alu 0 312 1 2140 282 107 51 chr1 195797653 195798066 -86395598 - L1MC4 LINE L1 -2134 4012 3624 758 101 0 0 chr1 195798066 195798165 -86395499 + AluSg/x SINE Alu 194 292 -18 2140 282 107 51 chr1 195798165 195799871 -86393793 - L1MC4 LINE L1 -2522 3624 2110 1368 229 93 15 chr1 195799996 195800641 -86393023 + L1M4 LINE L1 3067 3809 -2337 432 294 33 17 chr1 195800664 195800844 -86392820 + MARNA DNA Mariner 220 402 -184 734 46 0 0 chr1 195800852 195800939 -86392725 + L1PA3 LINE L1 6056 6142 -13 460 208 10 0 chr1 195800976 195801077 -86392587 + L1ME2 LINE L1 6021 6122 -42 394 130 52 0 chr1 195802143 195802220 -86391444 - MER53 DNA DNA -1 188 108 189 0 0 0 chr1 195802487 195802508 -86391156 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 657 224 7 40 chr1 195802515 195802667 -86390997 - AluJb SINE Alu -32 280 134 910 125 0 0 chr1 195802667 195802795 -86390869 - AluSg/x SINE Alu -3 307 180 1244 189 0 52 chr1 195802818 195803051 -86390613 - AluJo SINE Alu -91 221 1 27 0 0 0 chr1 195803064 195803091 -86390573 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr1 195803683 195803726 -86389938 + AT_rich Low_complexity Low_complexity 1 43 0 2344 92 0 0 chr1 195804146 195804439 -86389225 + AluSc SINE Alu 1 293 -16 1643 183 7 17 chr1 195805077 195805366 -86388298 + AluJb SINE Alu 1 286 -26 2365 91 10 0 chr1 195806495 195806793 -86386871 + AluSp SINE Alu 1 301 -12 685 232 0 21 chr1 195806998 195807140 -86386524 + MIR SINE MIR 103 241 -21 2381 81 0 3 chr1 195807244 195807540 -86386124 - AluSc SINE Alu -6 303 9 1540 152 105 14 chr1 195808464 195808740 -86384924 + AluJo SINE Alu 1 301 -11 206 318 15 106 chr1 195809487 195809685 -86383979 + L2 LINE L2 2796 2975 -339 1248 115 0 0 chr1 195809706 195809880 -86383784 + AluY SINE Alu 133 306 -5 1307 162 9 5 chr1 195810271 195810481 -86383183 + AluJb SINE Alu 94 304 -8 13898 193 39 12 chr1 195810557 195817047 -86376617 + L1PB1 LINE L1 6 6846 -21 326 299 145 74 chr1 195817376 195817412 -86376252 + L1ME4a LINE L1 5572 5604 -517 2395 68 0 0 chr1 195817412 195817707 -86375957 + AluY SINE Alu 1 295 -16 326 299 145 74 chr1 195817707 195818064 -86375600 + L1ME4a LINE L1 5604 5993 -128 1819 131 52 39 chr1 195818553 195818858 -86374806 + AluJb SINE Alu 1 309 -3 5838 128 37 2 chr1 195818977 195820129 -86373535 - L1MA8 LINE L1 -2 6289 5097 723 52 43 26 chr1 195820846 195820961 -86372703 + L1MB2 LINE L1 6054 6170 -1 1082 157 27 5 chr1 195821274 195821459 -86372205 - MER20 DNA MER1_type -1 218 30 1952 149 27 0 chr1 195821697 195821992 -86371672 + AluJo SINE Alu 1 303 -9 576 86 0 0 chr1 195821997 195822078 -86371586 + L1MA1 LINE L1 6194 6274 -28 673 322 58 16 chr1 195822591 195822606 -86371058 + HAL1b LINE L1 64 77 -1271 2027 119 61 0 chr1 195822606 195822901 -86370763 + AluSq SINE Alu 1 313 0 673 322 58 16 chr1 195822901 195823398 -86370266 + HAL1b LINE L1 77 598 -750 861 191 0 14 chr1 195823458 195823605 -86370059 + FRAM SINE Alu 11 155 -21 1418 210 10 42 chr1 195823664 195823973 -86369691 + AluJo SINE Alu 1 299 -13 1390 224 124 106 chr1 195824286 195825162 -86368502 + L1MC5 LINE L1 6626 7517 -444 1524 151 56 39 chr1 195825177 195825462 -86368202 - AluJo SINE Alu -22 290 1 712 147 18 0 chr1 195825492 195825601 -86368063 + FLAM_C SINE Alu 1 111 -32 191 61 30 0 chr1 195825607 195825640 -86368024 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr1 195825640 195825661 -86368003 + AT_rich Low_complexity Low_complexity 1 21 0 2418 75 0 3 chr1 195825922 195826228 -86367436 + AluY SINE Alu 1 305 -6 1960 168 0 0 chr1 195826997 195827301 -86366363 - AluJb SINE Alu -8 304 1 360 306 166 0 chr1 195827468 195827625 -86366039 - MIR3 SINE MIR -10 198 16 12145 147 28 10 chr1 195828043 195830256 -86363408 - L1M1 LINE L1 -553 5752 3580 1575 57 18 31 chr1 195830256 195830484 -86363180 - L1PA6 LINE L1 0 6154 5930 12145 147 28 10 chr1 195830484 195830521 -86363143 - L1M1 LINE L1 -2725 3580 3545 1755 169 0 32 chr1 195830521 195830829 -86362835 - AluJb SINE Alu -14 298 1 12145 147 28 10 chr1 195830829 195831404 -86362260 - L1M1 LINE L1 -2760 3545 2876 2341 121 0 0 chr1 195831534 195831841 -86361823 - AluSx SINE Alu -5 307 1 234 404 105 0 chr1 195832393 195832507 -86361157 - L2 LINE L2 -31 3241 3116 1613 178 14 21 chr1 195832688 195832916 -86360748 + AluJb SINE Alu 1 228 -84 1456 119 5 5 chr1 195832916 195833126 -86360538 - AluSg/x SINE Alu -8 304 95 1613 178 14 21 chr1 195833126 195833178 -86360486 + AluJb SINE Alu 228 279 -33 307 127 32 0 chr1 195833178 195833241 -86360423 + GA-rich Low_complexity Low_complexity 1 65 0 194 326 57 78 chr1 195833255 195833500 -86360164 - L2 LINE L2 -337 2977 2738 1695 142 8 4 chr1 195833517 195833771 -86359893 - AluJb SINE Alu -23 289 35 776 167 0 14 chr1 195833813 195833957 -86359707 - FLAM_C SINE Alu -1 142 1 485 261 96 0 chr1 195834670 195834785 -86358879 - MIR SINE MIR -55 153 28 24 53 0 0 chr1 195834852 195834890 -86358774 + AT_rich Low_complexity Low_complexity 1 38 0 260 236 124 34 chr1 195835751 195835775 -86357889 - L2 LINE L2 -5 3308 3288 2265 99 3 0 chr1 195835775 195836069 -86357595 + AluSx SINE Alu 1 295 -17 260 236 124 34 chr1 195836069 195836133 -86357531 - L2 LINE L2 -25 3288 3212 1099 121 0 0 chr1 195836135 195836292 -86357372 + AluSg/x SINE Alu 150 306 -6 392 274 157 20 chr1 195836294 195836491 -86357173 - L2 LINE L2 -94 3219 2996 469 300 84 26 chr1 195839086 195839276 -86354388 - MIR3 SINE MIR -6 202 2 560 193 42 61 chr1 195840556 195840572 -86353092 + L1MC5 LINE L1 7323 7338 -623 4121 188 119 62 chr1 195840572 195840627 -86353037 + Charlie1a DNA MER1_type 2 52 -2709 2484 59 3 7 chr1 195840627 195840934 -86352730 - AluSp SINE Alu -2 311 6 4121 188 119 62 chr1 195840934 195840985 -86352679 + Charlie1a DNA MER1_type 52 99 -2662 2372 53 0 17 chr1 195840985 195841287 -86352377 - AluY SINE Alu -14 297 1 4121 188 119 62 chr1 195841287 195841498 -86352166 + Charlie1a DNA MER1_type 99 296 -2465 2088 123 0 0 chr1 195841498 195841791 -86351873 - AluSx SINE Alu -19 293 1 4121 188 119 62 chr1 195841791 195842677 -86350987 + Charlie1a DNA MER1_type 296 1298 -1463 2042 130 17 3 chr1 195842677 195842970 -86350694 + AluSx SINE Alu 1 297 -15 4121 188 119 62 chr1 195842970 195843138 -86350526 + Charlie1a DNA MER1_type 1298 1455 0 560 193 42 61 chr1 195843138 195843333 -86350331 + L1MC5 LINE L1 7338 7530 -431 613 162 15 66 chr1 195843335 195843471 -86350193 + AluJ SINE Alu 1 129 -183 234 130 65 8 chr1 195843471 195843594 -86350070 + (TA)n Simple_repeat Simple_repeat 1 130 0 647 201 149 0 chr1 195843596 195843730 -86349934 + AluJ SINE Alu 136 289 -23 698 158 0 16 chr1 195843738 195843865 -86349799 + 7SK RNA RNA 1 125 -68 421 178 0 0 chr1 195843903 195843976 -86349688 + 7SK RNA RNA 121 193 0 246 297 81 54 chr1 195844236 195844458 -86349206 - L2 LINE L2 -237 3035 2808 515 221 22 77 chr1 195844538 195844656 -86349008 + MLT1F LTR MaLR 8 114 -428 845 132 0 7 chr1 195844656 195844792 -86348872 + L1MC1 LINE L1 6198 6332 -1 515 221 22 77 chr1 195844792 195844854 -86348810 + MLT1F LTR MaLR 114 178 -364 581 182 105 74 chr1 195844918 195845058 -86348606 - L1MC5 LINE L1 -87 7874 7721 2235 123 17 23 chr1 195845058 195845407 -86348257 + MER7A DNA MER2_type 2 346 0 581 182 105 74 chr1 195845407 195845524 -86348140 - L1MC5 LINE L1 -240 7721 7609 1770 62 0 26 chr1 195845743 195845969 -86347695 + AluY SINE Alu 83 302 -9 1002 229 89 94 chr1 195846133 195846748 -86346916 - L1MC5 LINE L1 -735 7226 6615 2827 241 121 19 chr1 195846751 195847919 -86345745 + L1 LINE L1 3885 5171 -975 1836 140 4 4 chr1 195848035 195848300 -86345364 - AluSx SINE Alu -47 265 1 1203 163 127 65 chr1 195848510 195848786 -86344878 + AluJo SINE Alu 1 293 -9 1748 158 0 45 chr1 195848792 195849102 -86344562 + AluJb SINE Alu 1 296 -16 1792 164 24 3 chr1 195849142 195849435 -86344229 + AluJo SINE Alu 1 299 -13 1320 273 123 19 chr1 195849438 195850087 -86343577 - L1MC4a LINE L1 -1547 6261 5545 487 299 60 5 chr1 195850087 195850271 -86343393 + L2 LINE L2 2620 2813 -501 1118 266 16 63 chr1 195850285 195850777 -86342887 - MLT1J LTR MaLR 0 511 43 1061 277 124 12 chr1 195850824 195851235 -86342429 + L2 LINE L2 2857 3313 0 219 221 52 52 chr1 195851440 195851517 -86342147 + MIR3 SINE MIR 89 165 -43 190 276 118 40 chr1 195851527 195851603 -86342061 - L2 LINE L2 -36 3236 3155 2161 139 7 0 chr1 195852039 195852349 -86341315 - AluSx SINE Alu 0 312 1 1764 183 0 30 chr1 195852855 195853156 -86340508 + AluJo SINE Alu 1 292 -20 228 281 97 0 chr1 195853161 195853275 -86340389 + MER112 DNA MER1_type 136 260 0 268 289 67 60 chr1 195853275 195853424 -86340240 + MIR SINE MIR 15 164 -98 2237 112 3 0 chr1 195853426 195853721 -86339943 + AluSg SINE Alu 3 298 -12 2241 129 3 0 chr1 195853728 195854037 -86339627 + AluSx SINE Alu 1 310 -2 1228 156 0 0 chr1 195854049 195854229 -86339435 + AluSg/x SINE Alu 120 299 -13 2486 57 0 3 chr1 195854397 195854695 -86338969 - AluY SINE Alu -14 297 1 2256 112 0 0 chr1 195855867 195856161 -86337503 - AluSx SINE Alu -18 294 1 702 288 257 43 chr1 195856331 195857242 -86336422 - L3 LINE CR1 -115 1462 357 1759 159 24 0 chr1 195857426 195857716 -86335948 + AluSg SINE Alu 1 297 -13 451 317 28 40 chr1 195857840 195858089 -86335575 + MLT1J LTR MaLR 224 469 -42 1339 195 0 0 chr1 195858142 195858363 -86335301 - MER58A DNA MER1_type 0 224 4 1929 152 7 0 chr1 195858493 195858799 -86334865 + AluJo SINE Alu 1 308 0 891 156 0 7 chr1 195858877 195859012 -86334652 - AluJo SINE Alu -178 134 1 944 247 121 41 chr1 195859866 195860206 -86333458 + L2 LINE L2 2932 3298 -15 2258 101 0 13 chr1 195860315 195860613 -86333051 + AluSg SINE Alu 1 294 -16 667 76 0 159 chr1 195860678 195860810 -86332854 + HY1 scRNA scRNA 1 111 -1 6444 70 1 57 chr1 195860902 195861248 -86332416 + L1PA12 LINE L1 4965 5329 -839 2187 79 0 7 chr1 195861248 195861527 -86332137 + AluSx SINE Alu 1 277 -35 1757 142 0 24 chr1 195861527 195861815 -86331849 + AluSx SINE Alu 32 312 0 6444 70 1 57 chr1 195861815 195862725 -86330939 + L1PA12 LINE L1 5327 6168 0 2237 78 17 7 chr1 195862828 195863122 -86330542 + AluY SINE Alu 1 297 -14 36322 80 7 10 chr1 195863887 195869047 -86324617 + L1PA6 LINE L1 11 5150 -1004 2246 111 3 3 chr1 195869047 195869354 -86324310 + AluSg SINE Alu 1 307 -3 36322 80 7 10 chr1 195869354 195870356 -86323308 + L1PA6 LINE L1 5150 6154 0 23 33 0 0 chr1 195870356 195870386 -86323278 + AT_rich Low_complexity Low_complexity 1 30 0 1769 170 17 7 chr1 195871142 195871442 -86322222 + AluJb SINE Alu 1 303 -9 2025 124 7 10 chr1 195871497 195871796 -86321868 + AluSx SINE Alu 1 298 -14 1916 104 20 61 chr1 195871873 195872192 -86321472 - AluSq SINE Alu 0 307 1 21 36 0 0 chr1 195872193 195872221 -86321443 + AT_rich Low_complexity Low_complexity 1 28 0 1178 176 19 5 chr1 195872224 195872434 -86321230 - MER46A DNA MER2_type 0 236 24 1045 156 70 11 chr1 195872516 195872702 -86320962 + AluJo SINE Alu 85 281 -31 1630 170 141 0 chr1 195872803 195873180 -86320484 + L1MD2 LINE L1 5681 6109 -250 938 224 82 4 chr1 195873316 195873548 -86320116 - MIR SINE MIR 0 262 13 1137 114 30 6 chr1 195873994 195874161 -86319503 - AluJb SINE Alu -6 306 136 2190 99 3 7 chr1 195874934 195875227 -86318437 - AluSx SINE Alu -20 292 1 2361 46 0 23 chr1 195877621 195877958 -86315706 - AluY SINE Alu 0 311 1 2467 44 0 7 chr1 195878130 195878428 -86315236 + AluY SINE Alu 1 296 -15 2100 101 0 11 chr1 195879557 195879835 -86313829 + AluSg SINE Alu 21 295 -15 1644 267 92 50 chr1 195880740 195881394 -86312270 + L1MC4a LINE L1 5296 5994 -1814 234 0 0 0 chr1 195881394 195881420 -86312244 + (TG)n Simple_repeat Simple_repeat 2 27 0 1644 267 92 50 chr1 195881420 195881600 -86312064 + L1MC4a LINE L1 5994 6165 -1643 28 0 0 0 chr1 195881656 195881684 -86311980 + AT_rich Low_complexity Low_complexity 1 28 0 1721 152 24 14 chr1 195881687 195881816 -86311848 + AluJb SINE Alu 1 127 -185 2181 111 3 7 chr1 195881816 195882122 -86311542 + AluSg SINE Alu 1 305 -5 1721 152 24 14 chr1 195882122 195882282 -86311382 + AluJb SINE Alu 127 293 -19 2137 103 0 0 chr1 195883132 195883404 -86310260 - AluSc SINE Alu -37 272 1 688 179 34 0 chr1 195883405 195883522 -86310142 - FLAM_A SINE Alu -10 132 12 2414 97 0 0 chr1 195884678 195884987 -86308677 + AluSg SINE Alu 1 309 -1 884 146 0 8 chr1 195885100 195885223 -86308441 - FLAM_A SINE Alu -10 123 2 23 33 0 0 chr1 195885519 195885549 -86308115 + AT_rich Low_complexity Low_complexity 1 30 0 1665 195 27 7 chr1 195885954 195886251 -86307413 - AluJo SINE Alu -9 303 1 264 30 0 0 chr1 195886914 195886947 -86306717 + (T)n Simple_repeat Simple_repeat 1 33 0 2151 113 7 10 chr1 195886960 195887261 -86306403 - AluSx SINE Alu -2 310 11 207 0 0 0 chr1 195887312 195887335 -86306329 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1681 83 5 9 chr1 195887362 195887580 -86306084 - AluSx SINE Alu -95 217 1 729 128 35 92 chr1 195887611 195887752 -86305912 + FLAM_C SINE Alu 1 133 0 1904 137 0 52 chr1 195887815 195887961 -86305703 + AluSx SINE Alu 1 124 -188 2284 104 0 10 chr1 195887961 195888258 -86305406 + AluSx SINE Alu 1 294 -18 1904 137 0 52 chr1 195888258 195888418 -86305246 + AluSx SINE Alu 124 291 -21 21 0 0 0 chr1 195888418 195888439 -86305225 + AT_rich Low_complexity Low_complexity 1 21 0 2339 74 0 13 chr1 195888449 195888747 -86304917 + AluSg SINE Alu 1 294 -16 2261 99 0 7 chr1 195889960 195890262 -86303402 - AluSg SINE Alu -10 300 1 289 164 218 0 chr1 195890660 195890715 -86302949 - U6 snRNA snRNA -39 68 2 25 51 0 0 chr1 195890812 195890851 -86302813 + AT_rich Low_complexity Low_complexity 1 39 0 1972 117 0 7 chr1 195890902 195891224 -86302440 - AluSc SINE Alu 0 320 1 303 370 11 8 chr1 195891254 195891438 -86302226 + MIR SINE MIR 20 247 -15 2075 119 24 0 chr1 195892426 195892721 -86300943 - AluSx SINE Alu -10 302 1 791 243 109 5 chr1 195892735 195892937 -86300727 + MIR SINE MIR 29 251 -11 2241 108 0 7 chr1 195893283 195893579 -86300085 + AluSq SINE Alu 2 295 -18 1522 195 50 0 chr1 195893720 195893997 -86299667 + AluJo SINE Alu 1 291 -21 213 315 14 0 chr1 195894191 195894264 -86299400 + GA-rich Low_complexity Low_complexity 2 75 0 2470 85 0 13 chr1 195894476 195894792 -86298872 - AluSx SINE Alu 0 312 1 2169 123 3 3 chr1 195894846 195895147 -86298517 + AluSq SINE Alu 2 302 -11 2232 104 0 3 chr1 195895468 195895765 -86297899 + AluSg SINE Alu 1 296 -14 2420 100 0 0 chr1 195896578 195896889 -86296775 + AluSx SINE Alu 2 312 0 2256 121 3 3 chr1 195896971 195897284 -86296380 - AluSq SINE Alu 0 313 1 864 225 0 6 chr1 195897611 195897780 -86295884 - AluJb SINE Alu -3 309 142 808 183 7 0 chr1 195897789 195897926 -86295738 + AluJb SINE Alu 154 291 -21 1056 105 0 0 chr1 195897929 195898062 -86295602 + AluSq/x SINE Alu 1 133 -180 2445 64 0 3 chr1 195898065 195898362 -86295302 + AluY SINE Alu 1 296 -15 1473 153 16 100 chr1 195898373 195898694 -86294970 + AluJo SINE Alu 2 295 -17 1956 146 0 10 chr1 195898700 195899002 -86294662 + AluJo SINE Alu 1 299 -13 226 234 88 35 chr1 195899044 195899215 -86294449 + L1ME4a LINE L1 5768 5947 -174 22 35 0 0 chr1 195899505 195899534 -86294130 + AT_rich Low_complexity Low_complexity 1 29 0 640 240 187 34 chr1 195899993 195900034 -86293630 - HAL1 LINE L1 -643 1864 1831 2482 55 0 7 chr1 195900034 195900342 -86293322 - AluY SINE Alu -5 306 1 640 240 187 34 chr1 195900342 195900567 -86293097 - HAL1 LINE L1 -676 1831 1557 897 214 12 0 chr1 195900568 195900741 -86292923 + MER3 DNA MER1_type 2 129 -80 987 265 164 34 chr1 195900762 195901441 -86292223 - HAL1 LINE L1 -943 1564 798 2276 101 7 0 chr1 195901441 195901738 -86291926 + AluSx SINE Alu 1 299 -13 1905 141 41 0 chr1 195902051 195902341 -86291323 - AluSx SINE Alu -10 302 1 2165 114 3 7 chr1 195902795 195903094 -86290570 - AluSx SINE Alu -14 298 1 2175 100 0 36 chr1 195903145 195903454 -86290210 + AluSx SINE Alu 1 298 -14 1032 259 17 0 chr1 195904449 195904685 -86288979 - MIR SINE MIR -4 258 19 2356 82 7 10 chr1 195904685 195904988 -86288676 - AluSg SINE Alu -4 306 5 187 289 0 0 chr1 195905028 195905073 -86288591 - MIR SINE MIR 0 262 218 319 234 269 42 chr1 195905154 195905321 -86288343 - MIR SINE MIR -52 210 6 1535 190 28 3 chr1 195906177 195906466 -86287198 - AluJo SINE Alu -16 296 1 30 27 0 0 chr1 195906568 195906605 -86287059 + AT_rich Low_complexity Low_complexity 1 37 0 461 274 62 14 chr1 195906697 195906843 -86286821 - MIR SINE MIR -98 164 12 2340 88 7 0 chr1 195907295 195907591 -86286073 - AluSx SINE Alu -14 298 1 183 42 0 0 chr1 195907645 195907669 -86285995 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 708 148 10 0 chr1 195907678 195907779 -86285885 - FRAM SINE Alu -31 145 44 1843 137 31 27 chr1 195907858 195908150 -86285514 - AluSx SINE Alu -19 293 1 531 264 16 50 chr1 195908182 195908364 -86285300 + MER5B DNA MER1_type 2 177 -1 237 289 101 19 chr1 195908424 195908583 -86285081 + L2 LINE L2 1915 2086 -1228 21 0 0 0 chr1 195909069 195909090 -86284574 + AT_rich Low_complexity Low_complexity 1 21 0 213 287 22 83 chr1 195910450 195910631 -86283033 + MIR SINE MIR 82 251 -11 2167 123 7 0 chr1 195910772 195911072 -86282592 + AluSx SINE Alu 1 302 -10 2265 116 0 0 chr1 195911242 195911535 -86282129 + AluSc SINE Alu 1 293 -16 921 93 0 0 chr1 195911622 195911740 -86281924 - AluSg/x SINE Alu -18 292 175 21 36 0 0 chr1 195911740 195911768 -86281896 + AT_rich Low_complexity Low_complexity 1 28 0 4647 139 75 38 chr1 195911775 195911832 -86281832 - Charlie1 DNA MER1_type -133 2628 2575 2104 132 0 7 chr1 195911832 195912136 -86281528 - AluSx SINE Alu -10 302 1 4647 139 75 38 chr1 195912136 195913068 -86280596 - Charlie1 DNA MER1_type -186 2575 1603 1641 159 3 41 chr1 195913119 195913409 -86280255 - AluJo SINE Alu -22 290 12 2347 80 7 3 chr1 195913495 195913794 -86279870 + AluSg SINE Alu 1 300 -10 1384 170 0 25 chr1 195913802 195914037 -86279627 + AluSx SINE Alu 1 229 -83 895 120 167 13 chr1 195914037 195914187 -86279477 - AluSg/x SINE Alu -68 241 69 2082 112 18 3 chr1 195914455 195914740 -86278924 - AluSg SINE Alu -21 289 1 1573 138 24 4 chr1 195914740 195914986 -86278678 - AluSx SINE Alu -16 296 46 980 145 51 37 chr1 195915214 195915451 -86278213 + AluSq SINE Alu 1 296 -17 608 167 114 0 chr1 195916172 195916286 -86277378 + FRAM SINE Alu 34 160 -16 1639 131 91 7 chr1 195917126 195917400 -86276264 + AluSx SINE Alu 1 297 -15 1887 130 27 3 chr1 195919426 195919718 -86273946 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr1 195921577 195921598 -86272066 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr1 195923341 195923361 -86270303 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 2156 91 0 18 chr1 195924249 195924562 -86269102 - AluY SINE Alu 0 308 1 758 161 0 0 chr1 195924565 195924677 -86268987 - AluSg/x SINE Alu -15 297 186 660 115 31 0 chr1 195924788 195924884 -86268780 + L1PB1 LINE L1 6050 6148 -3 2209 118 3 0 chr1 195924915 195925211 -86268453 + AluSx SINE Alu 1 297 -15 350 308 0 0 chr1 195925909 195926013 -86267651 + L1M4 LINE L1 3656 3759 -2387 808 272 57 89 chr1 195926021 195926163 -86267501 + L1M4 LINE L1 3824 3969 -2177 2371 82 3 0 chr1 195926163 195926467 -86267197 + AluSp SINE Alu 1 305 -8 808 272 57 89 chr1 195926467 195926528 -86267136 + L1M4 LINE L1 3969 4030 -2116 2354 55 0 55 chr1 195926528 195926840 -86266824 - AluY SINE Alu -16 295 1 808 272 57 89 chr1 195926840 195927072 -86266592 + L1M4 LINE L1 4030 4246 -1900 414 57 0 0 chr1 195927306 195927359 -86266305 + (TG)n Simple_repeat Simple_repeat 2 54 0 189 147 0 0 chr1 195927486 195927520 -86266144 + (TA)n Simple_repeat Simple_repeat 1 34 0 2232 101 7 3 chr1 195927520 195927816 -86265848 - AluSx SINE Alu -15 297 1 1637 191 0 17 chr1 195927849 195928148 -86265516 - AluJb SINE Alu -18 294 1 2212 124 0 0 chr1 195928516 195928807 -86264857 - AluSx SINE Alu -21 291 1 1566 160 56 82 chr1 195929015 195929371 -86264293 - MER7A DNA MER2_type -1 345 1 1566 160 11 8 chr1 195929559 195929821 -86263843 - AluJb SINE Alu 0 312 50 308 238 16 0 chr1 195929849 195929912 -86263752 - AluJb SINE Alu -238 64 1 181 296 99 20 chr1 195929934 195930086 -86263578 + L3b LINE CR1 1248 1411 -172 2235 104 0 23 chr1 195930991 195931299 -86262365 + AluSq SINE Alu 1 301 -12 2126 111 10 0 chr1 195931859 195932147 -86261517 + AluSx SINE Alu 1 291 -21 7472 40 0 41 chr1 195933144 195933962 -86259702 - L1PA5 LINE L1 0 6154 5304 2409 84 0 0 chr1 195933962 195934259 -86259405 + AluY SINE Alu 1 297 -14 7472 40 0 41 chr1 195934259 195934423 -86259241 - L1PA5 LINE L1 -850 5304 5135 2536 75 3 0 chr1 195934423 195934729 -86258935 - AluY SINE Alu -4 307 1 7472 40 0 41 chr1 195934729 195935033 -86258631 - L1PA5 LINE L1 -1019 5135 4889 608 245 128 5 chr1 195935122 195935310 -86258354 - MIR SINE MIR -51 211 1 2189 87 31 3 chr1 195935386 195935674 -86257990 + AluSp SINE Alu 1 296 -17 1828 171 0 20 chr1 195936343 195936647 -86257017 - AluJb SINE Alu -14 298 1 773 159 45 94 chr1 195936967 195937141 -86256523 - MER3 DNA MER1_type -18 191 27 1728 181 20 3 chr1 195937141 195937434 -86256230 + AluJb SINE Alu 1 298 -14 773 159 45 94 chr1 195937434 195937460 -86256204 - MER3 DNA MER1_type -182 27 1 1639 191 9 19 chr1 195940604 195940919 -86252745 - AluJo SINE Alu 0 312 1 875 137 15 0 chr1 195942219 195942350 -86251314 - FLAM_A SINE Alu 0 133 1 896 264 18 9 chr1 195942878 195943098 -86250566 + MER58A DNA MER1_type 1 222 -2 643 213 31 8 chr1 195943836 195943963 -86249701 + FLAM_A SINE Alu 1 130 -3 2072 142 0 0 chr1 195945097 195945392 -86248272 - AluSx SINE Alu -17 295 1 603 197 56 7 chr1 195945852 195945994 -86247670 - MIR SINE MIR 0 262 114 262 224 271 9 chr1 195946026 195946133 -86247531 - MIR SINE MIR -100 162 28 964 226 168 99 chr1 195946405 195946768 -86246896 - MLT1H1 LTR MaLR -1 554 202 268 208 38 0 chr1 195946894 195946947 -86246717 - MLT1H1 LTR MaLR -468 62 8 185 0 40 0 chr1 195946984 195947009 -86246655 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2100 144 3 0 chr1 195947287 195947592 -86246072 - AluJb SINE Alu -6 306 1 21 36 0 0 chr1 195949165 195949193 -86244471 + AT_rich Low_complexity Low_complexity 1 28 0 607 146 0 92 chr1 195950316 195950368 -86243296 - FLAM_C SINE Alu -184 118 63 2366 93 3 3 chr1 195950368 195950668 -86242996 + AluSq SINE Alu 1 300 -13 607 146 0 92 chr1 195950668 195950745 -86242919 - FLAM_C SINE Alu -239 63 1 376 167 219 0 chr1 195951803 195951899 -86241765 - MER5B DNA MER1_type -60 118 2 2062 113 41 3 chr1 195953589 195953882 -86239782 - AluJo SINE Alu -8 304 1 233 125 42 21 chr1 195956928 195956976 -86236688 + CT-rich Low_complexity Low_complexity 3 51 0 188 220 140 0 chr1 195957341 195957391 -86236273 + L2 LINE L2 371 427 -2887 244 309 83 60 chr1 195957520 195957627 -86236037 + L2 LINE L2 584 687 -2627 2320 101 0 3 chr1 195957627 195957925 -86235739 + AluSx SINE Alu 1 297 -15 244 309 83 60 chr1 195957925 195958131 -86235533 + L2 LINE L2 687 904 -2410 301 279 12 12 chr1 195958321 195958407 -86235257 - MER5A DNA MER1_type 0 189 104 306 259 178 7 chr1 195958513 195958648 -86235016 + MER103 DNA DNA 2 159 -7 862 137 0 43 chr1 195958833 195958972 -86234692 - FLAM_C SINE Alu 0 133 1 2165 104 14 10 chr1 195959025 195959322 -86234342 + AluSp SINE Alu 1 298 -15 2082 125 3 7 chr1 195959887 195960218 -86233446 + AluSq SINE Alu 1 330 0 2414 94 0 0 chr1 195960403 195960702 -86232962 + AluSq SINE Alu 7 305 -8 1757 180 7 3 chr1 195960744 195961049 -86232615 - AluJb SINE Alu -6 306 1 2165 100 7 0 chr1 195961075 195961376 -86232288 + AluSg SINE Alu 2 304 0 347 290 130 12 chr1 195961498 195961667 -86231997 - MIR3 SINE MIR -5 203 15 293 252 81 0 chr1 195962202 195962313 -86231351 + L1ME4a LINE L1 5924 6043 -78 * 990 162 31 16 chr1 195962296 195962487 -86231177 + L1MC1 LINE L1 5699 5892 -441 2335 64 0 11 chr1 195962487 195962768 -86230896 + AluY SINE Alu 2 279 -32 198 0 0 0 chr1 195962770 195962792 -86230872 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 236 259 9 83 chr1 195962820 195962928 -86230736 + MIR3 SINE MIR 82 181 -27 208 286 0 26 chr1 195963284 195963361 -86230303 + GA-rich Low_complexity Low_complexity 3 77 0 683 213 26 13 chr1 195963511 195963666 -86229998 + MER103 DNA DNA 5 161 -5 484 184 0 0 chr1 195965688 195965764 -86227900 + AluSx SINE Alu 7 82 -231 2340 87 0 3 chr1 195965764 195966062 -86227602 + AluSg1 SINE Alu 1 297 -12 1646 119 5 0 chr1 195966062 195966280 -86227384 + AluSx SINE Alu 76 295 -17 183 220 0 0 chr1 195966403 195966453 -86227211 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2208 108 0 3 chr1 195967583 195967870 -86225794 + AluSx SINE Alu 1 286 -26 198 0 0 0 chr1 195967877 195967899 -86225765 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 366 317 145 32 chr1 195967911 195968283 -86225381 + L2 LINE L2 2215 2628 -686 2332 102 0 0 chr1 195970717 195971011 -86222653 + AluSx SINE Alu 1 294 -18 467 269 43 55 chr1 195971020 195971277 -86222387 - L2 LINE L2 -145 3168 2915 1574 143 50 29 chr1 195971479 195971758 -86221906 + AluJo SINE Alu 1 285 -27 31 0 0 0 chr1 195971760 195971791 -86221873 + AT_rich Low_complexity Low_complexity 1 31 0 2079 113 0 14 chr1 195971798 195972080 -86221584 + AluSx SINE Alu 2 279 -33 2105 121 3 13 chr1 195972113 195972426 -86221238 - AluSx SINE Alu -1 311 2 658 178 0 8 chr1 195972529 195972647 -86221017 - FLAM_A SINE Alu -15 118 2 22 56 0 0 chr1 195972713 195972749 -86220915 + AT_rich Low_complexity Low_complexity 1 36 0 1842 169 3 7 chr1 195972754 195973055 -86220609 + AluJb SINE Alu 1 300 -12 316 300 12 0 chr1 195973058 195973138 -86220526 - Charlie1 DNA MER1_type -2680 81 1 416 169 0 0 chr1 195973192 195973257 -86220407 - L1MC4 LINE L1 -383 7659 7595 496 128 128 0 chr1 195973259 195973337 -86220327 + 5S rRNA rRNA 1 88 -33 1748 173 65 34 chr1 195973337 195973724 -86219940 - L1MC4 LINE L1 -438 7604 7206 1522 185 7 46 chr1 195973757 195973913 -86219751 - AluJb SINE Alu -21 291 151 2226 127 0 0 chr1 195973913 195974212 -86219452 - AluSq SINE Alu -14 299 1 1522 185 7 46 chr1 195974212 195974358 -86219306 - AluJb SINE Alu -161 151 1 1255 254 88 40 chr1 195974451 195974881 -86218783 + L1MC4a LINE L1 5476 5926 -1882 487 300 82 0 chr1 195975352 195975522 -86218142 - MIR SINE MIR -28 234 51 183 49 73 0 chr1 195975757 195975798 -86217866 + (TA)n Simple_repeat Simple_repeat 1 44 0 969 172 58 0 chr1 195975798 195975972 -86217692 - AluJo SINE Alu -128 184 1 229 286 0 0 chr1 195976239 195976295 -86217369 + L3 LINE CR1 620 675 -902 23 42 0 21 chr1 195976633 195976661 -86217003 + AT_rich Low_complexity Low_complexity 1 29 -18 1355 209 60 0 chr1 195976661 195976827 -86216837 + AluJo SINE Alu 1 192 -120 2438 65 7 3 chr1 195976827 195977137 -86216527 - AluY SINE Alu 0 311 1 1355 209 60 0 chr1 195977137 195977252 -86216412 + AluJo SINE Alu 192 299 -13 23 42 0 21 chr1 195977252 195977271 -86216393 + AT_rich Low_complexity Low_complexity 29 47 0 1436 122 23 5 chr1 195978292 195978513 -86215151 + AluJb SINE Alu 1 225 -87 2278 175 100 82 chr1 195978513 195978772 -86214892 + Ricksha_b DNA DNA 289 542 -2312 2201 102 0 32 chr1 195978772 195979086 -86214578 + AluSc SINE Alu 5 308 -1 2278 175 100 82 chr1 195979086 195979307 -86214357 + Ricksha_b DNA DNA 542 757 -2097 1689 179 4 0 chr1 195979307 195979575 -86214089 - AluJo SINE Alu -27 285 17 2278 175 100 82 chr1 195979575 195979864 -86213800 + Ricksha_b DNA DNA 757 1073 -181 1004 127 0 48 chr1 195979867 195980032 -86213632 - FRAM SINE Alu -9 167 11 516 177 30 79 chr1 195980071 195980102 -86213562 + Ricksha_b DNA DNA 1074 1105 -1749 2253 94 7 0 chr1 195980102 195980401 -86213263 - AluSx SINE Alu -11 301 1 516 177 30 79 chr1 195980401 195980429 -86213235 + Ricksha_b DNA DNA 1105 1133 -1721 2014 88 53 3 chr1 195980429 195980712 -86212952 + AluSc SINE Alu 1 297 -12 516 177 30 79 chr1 195980712 195980815 -86212849 + Ricksha_b DNA DNA 1133 1229 -25 319 360 84 12 chr1 195980828 195981213 -86212451 + L2 LINE L2 2703 3115 -157 2021 94 16 52 chr1 195981833 195982142 -86211522 - AluSq SINE Alu -15 298 1 781 182 14 47 chr1 195982404 195982552 -86211112 - FRAM SINE Alu -33 143 1 2240 127 0 9 chr1 195982699 195983014 -86210650 + AluSx SINE Alu 1 312 0 188 67 33 0 chr1 195984424 195984454 -86209210 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chr1 195984992 195985014 -86208650 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1389 97 0 0 chr1 195988546 195988732 -86204932 + AluSg/x SINE Alu 124 309 -1 303 28 0 0 chr1 195988916 195988952 -86204712 + (TA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr1 195988952 195988975 -86204689 + AT_rich Low_complexity Low_complexity 1 23 0 266 115 19 0 chr1 195989104 195989156 -86204508 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr1 195989156 195989177 -86204487 + AT_rich Low_complexity Low_complexity 1 21 0 649 189 54 7 chr1 195991255 195991403 -86202261 + MER58A DNA MER1_type 45 199 -25 1931 126 31 0 chr1 195991459 195991745 -86201919 + AluSx SINE Alu 15 309 -3 2308 110 0 0 chr1 195991745 195992044 -86201620 + AluSg SINE Alu 1 300 -10 2419 72 3 0 chr1 195992379 195992671 -86200993 + AluSp SINE Alu 1 293 -20 297 200 23 100 chr1 195992671 195992796 -86200868 + L1ME4a LINE L1 5974 6088 -33 2265 95 3 0 chr1 195993014 195993308 -86200356 - AluSc SINE Alu -14 295 1 2077 122 16 3 chr1 195993843 195994146 -86199518 + AluSx SINE Alu 1 307 -5 2194 124 0 10 chr1 195994146 195994460 -86199204 + AluSx SINE Alu 1 311 -1 1196 121 22 0 chr1 195994466 195994648 -86199016 + AluSg/x SINE Alu 125 310 0 2409 48 21 0 chr1 195994740 195995030 -86198634 + AluY SINE Alu 1 296 -15 1542 165 40 84 chr1 195996066 195996387 -86197277 + AluJo SINE Alu 1 307 -5 1226 34 0 7 chr1 195996607 195996781 -86196883 + L1PA5 LINE L1 5992 6164 0 2083 137 0 7 chr1 195997315 195997615 -86196049 - AluJb SINE Alu -14 298 1 181 306 16 16 chr1 195997658 195997720 -86195944 + MIR SINE MIR 8 69 -193 2077 109 0 4 chr1 195997904 195998180 -86195484 - AluSg SINE Alu -19 291 17 1207 160 11 5 chr1 195998180 195998368 -86195296 + AluSg/x SINE Alu 104 292 -18 246 32 0 0 chr1 195998371 195998402 -86195262 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1556 179 7 7 chr1 195999952 196000232 -86193432 - AluJo SINE Alu -32 280 1 1111 168 218 3 chr1 196000247 196000598 -86193066 + LTR54B LTR ERV1 8 479 -31 220 180 30 20 chr1 196000601 196000701 -86192963 + (TA)n Simple_repeat Simple_repeat 1 101 0 1651 153 67 0 chr1 196000793 196001075 -86192589 - AluJo SINE Alu -11 301 1 2194 133 0 0 chr1 196001557 196001858 -86191806 - AluSx SINE Alu -11 301 1 437 279 105 71 chr1 196001858 196002074 -86191590 + L1ME2 LINE L1 5625 5832 -330 2155 113 3 7 chr1 196002074 196002366 -86191298 + AluSx SINE Alu 1 291 -21 437 279 105 71 chr1 196002366 196002487 -86191177 + L1ME2 LINE L1 5832 5948 -214 1312 189 51 54 chr1 196002487 196002783 -86190881 + AluJo SINE Alu 1 295 -17 437 279 105 71 chr1 196002783 196002858 -86190806 + L1ME2 LINE L1 5948 6019 -143 21 36 0 0 chr1 196002897 196002925 -86190739 + AT_rich Low_complexity Low_complexity 1 28 0 1429 201 50 14 chr1 196002942 196003220 -86190444 + AluJo SINE Alu 3 290 -22 2230 81 3 3 chr1 196003232 196003515 -86190149 + AluSp SINE Alu 1 283 -30 820 66 0 9 chr1 196003736 196003842 -86189822 - AluY SINE Alu -18 293 189 228 143 0 0 chr1 196004340 196004382 -86189282 + (A)n Simple_repeat Simple_repeat 1 42 0 192 40 0 0 chr1 196004552 196004577 -86189087 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr1 196004592 196004612 -86189052 + (A)n Simple_repeat Simple_repeat 1 20 0 2078 115 7 0 chr1 196005472 196005760 -86187904 - AluSx SINE Alu -22 290 1 2111 117 0 0 chr1 196005946 196006251 -86187413 + AluSx SINE Alu 1 305 0 2861 123 48 4 chr1 196006255 196006760 -86186904 + L1MA5 LINE L1 5620 6146 -154 435 114 0 43 chr1 196006917 196006987 -86186677 + FLAM_A SINE Alu 50 116 -26 2374 98 0 0 chr1 196007134 196007440 -86186224 + AluY SINE Alu 1 306 -5 270 0 0 0 chr1 196007453 196007483 -86186181 + (CAA)n Simple_repeat Simple_repeat 3 32 0 2187 100 7 13 chr1 196007509 196007808 -86185856 - AluY SINE Alu -14 297 1 2406 109 0 0 chr1 196008038 196008350 -86185314 + AluSx SINE Alu 1 312 0 841 107 24 71 chr1 196008492 196008601 -86185063 + L1MA5 LINE L1 6135 6235 -65 2194 75 4 7 chr1 196008601 196008880 -86184784 + AluSp SINE Alu 35 312 -1 841 107 24 71 chr1 196008880 196008939 -86184725 + L1MA5 LINE L1 6235 6295 -5 1326 101 0 16 chr1 196009092 196009280 -86184384 - AluSg/x SINE Alu -4 306 122 368 291 58 63 chr1 196009460 196009649 -86184015 - MIR SINE MIR -74 188 1 1653 158 17 47 chr1 196009754 196010052 -86183612 - AluJo SINE Alu -23 289 1 2305 99 0 10 chr1 196010450 196010754 -86182910 + AluSx SINE Alu 1 301 -11 323 216 164 8 chr1 196010754 196010888 -86182776 + L1M4 LINE L1 3200 3354 -2792 382 202 106 32 chr1 196010936 196011124 -86182540 + LTR37B LTR ERV1 222 423 -45 941 251 124 17 chr1 196011136 196011678 -86181986 + L1M4 LINE L1 3964 4563 -1583 2236 85 3 10 chr1 196011678 196011971 -86181693 + AluSc SINE Alu 1 291 -18 2286 117 0 7 chr1 196012013 196012320 -86181344 + AluSx SINE Alu 1 305 -7 1214 158 0 0 chr1 196012321 196012504 -86181160 + AluSg/x SINE Alu 125 307 -5 921 188 218 0 chr1 196012505 196012771 -86180893 - MER33 DNA MER1_type 0 324 1 228 296 0 0 chr1 196012771 196012842 -86180822 + L1M4 LINE L1 4573 4643 -1503 474 262 119 27 chr1 196012885 196013221 -86180443 + L1M4 LINE L1 4738 5104 -1042 2193 101 3 51 chr1 196016540 196016856 -86176808 - AluSx SINE Alu -11 301 1 2162 105 7 0 chr1 196017502 196017787 -86175877 + AluSc SINE Alu 1 287 -22 1988 141 7 3 chr1 196018048 196018338 -86175326 + AluJb SINE Alu 1 291 -21 2449 87 3 0 chr1 196018623 196018934 -86174730 + AluSx SINE Alu 1 312 0 1925 139 10 3 chr1 196019230 196019518 -86174146 + AluJb SINE Alu 2 291 -21 309 271 44 0 chr1 196019708 196019903 -86173761 - L1MC/D LINE L1 -745 5435 5254 468 285 135 89 chr1 196019964 196020603 -86173061 - L1MC/D LINE L1 -982 5164 4497 2136 80 42 7 chr1 196021046 196021335 -86172329 - AluSc SINE Alu -10 299 1 35 0 0 0 chr1 196021470 196021505 -86172159 + AT_rich Low_complexity Low_complexity 1 35 0 811 149 0 0 chr1 196021505 196021626 -86172038 - 5S rRNA rRNA 0 121 1 23 54 0 0 chr1 196021652 196021689 -86171975 + AT_rich Low_complexity Low_complexity 1 37 0 818 114 0 0 chr1 196021779 196021893 -86171771 + FLAM_C SINE Alu 5 118 -15 227 53 0 26 chr1 196021900 196021938 -86171726 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 35 41 0 0 chr1 196022073 196022122 -86171542 + AT_rich Low_complexity Low_complexity 1 49 0 1917 118 77 9 chr1 196022234 196022572 -86171092 - MER46B DNA MER2_type 0 236 1 2293 109 0 3 chr1 196023150 196023452 -86170212 - AluSx SINE Alu -11 301 1 516 272 22 60 chr1 196025120 196025352 -86168312 - Charlie8 DNA MER1_type -2145 272 50 2261 98 0 0 chr1 196025445 196025741 -86167923 + AluSc SINE Alu 1 296 -13 325 269 148 45 chr1 196026016 196026239 -86167425 - L2 LINE L2 -8 3305 3060 419 153 0 0 chr1 196026239 196026298 -86167366 - AluS SINE Alu -247 66 8 1417 101 10 10 chr1 196026298 196026496 -86167168 + AluSg/x SINE Alu 112 309 -1 302 250 31 0 chr1 196026496 196026560 -86167104 - L2 LINE L2 -245 3068 3003 1402 196 185 179 chr1 196026743 196027289 -86166375 - L2 LINE L2 -339 2975 2434 2349 82 7 0 chr1 196027289 196027583 -86166081 - AluSc SINE Alu -13 296 1 1402 196 185 179 chr1 196027583 196027633 -86166031 - L2 LINE L2 -880 2434 2386 385 235 90 18 chr1 196027633 196027799 -86165865 - MER104 DNA Tc2 -2 178 1 2843 10 0 0 chr1 196027806 196028117 -86165547 + AluYa5 SINE Alu 1 311 0 1402 196 185 179 chr1 196028117 196028344 -86165320 - L2 LINE L2 -933 2381 2157 1671 115 48 96 chr1 196028344 196028657 -86165007 + AluSx SINE Alu 1 298 -14 1402 196 185 179 chr1 196028657 196028821 -86164843 - L2 LINE L2 -1157 2157 1806 190 185 15 138 chr1 196028823 196028888 -86164776 - L2 LINE L2 -1843 1471 1415 2458 66 0 7 chr1 196029109 196029413 -86164251 - AluY SINE Alu -9 302 1 240 350 152 28 chr1 196029546 196030152 -86163512 - L2 LINE L2 -779 2535 1855 22 0 0 0 chr1 196030894 196030916 -86162748 + AT_rich Low_complexity Low_complexity 1 22 0 959 194 38 0 chr1 196031185 196031371 -86162293 - MER3 DNA MER1_type -6 203 11 2021 104 0 35 chr1 196031555 196031868 -86161796 + AluSg SINE Alu 1 303 0 1366 171 61 8 chr1 196032099 196032363 -86161301 - AluJo SINE Alu -30 282 5 180 0 0 0 chr1 196032445 196032465 -86161199 + (A)n Simple_repeat Simple_repeat 1 20 0 383 275 238 5 chr1 196032499 196032688 -86160976 + MIR SINE MIR 30 262 0 207 85 106 0 chr1 196032779 196032826 -86160838 + A-rich Low_complexity Low_complexity 2 53 0 995 141 96 6 chr1 196033439 196033616 -86160048 - MER46A DNA MER2_type 0 236 44 730 121 9 9 chr1 196033983 196034099 -86159565 + AluSg/x SINE Alu 177 292 -20 2270 89 13 0 chr1 196034287 196034591 -86159073 + AluSx SINE Alu 1 308 -4 3000 183 68 30 chr1 196036984 196037707 -86155957 - L1MB8 LINE L1 0 6178 5429 1172 160 146 11 chr1 196037714 196037982 -86155682 - L1MA7 LINE L1 0 6291 5988 782 119 0 0 chr1 196037993 196038111 -86155553 - L1MB8 LINE L1 -748 5436 5319 561 160 10 0 chr1 196038115 196038215 -86155449 - L1MC3 LINE L1 -8 7777 7677 1171 97 0 0 chr1 196038224 196038378 -86155286 - AluSg/x SINE Alu -25 287 134 986 133 28 22 chr1 196038378 196038559 -86155105 - L1MC3 LINE L1 -91 7694 7513 329 140 0 0 chr1 196038559 196038609 -86155055 - Alu SINE Alu -20 280 231 691 134 8 17 chr1 196038610 196038729 -86154935 - AluJo SINE Alu -154 158 41 1730 107 0 25 chr1 196038753 196038995 -86154669 - AluSx SINE Alu -18 294 59 1081 125 0 7 chr1 196088995 196089147 -86104517 - AluSx SINE Alu -155 157 7 5829 178 126 42 chr1 196089157 196091308 -86102356 - L1MC3 LINE L1 -272 7513 5179 1252 196 6 100 chr1 196091308 196091649 -86102015 - AluJb SINE Alu -2 310 2 738 134 125 0 chr1 196091659 196091771 -86101893 - AluJb SINE Alu -179 133 8 810 156 39 28 chr1 196091801 196091980 -86101684 - L1MC3 LINE L1 -982 5164 4984 2927 9 0 0 chr1 196092000 196092315 -86101349 - AluYb8 SINE Alu -3 315 1 384 197 122 68 chr1 196092335 196092375 -86101289 - L1MC3 LINE L1 -1667 4479 4443 1908 126 20 10 chr1 196092375 196092668 -86100996 - AluSx SINE Alu -16 296 1 384 197 122 68 chr1 196092668 196092774 -86100890 - L1MC3 LINE L1 -1703 4443 4325 2025 89 21 92 chr1 196092864 196093191 -86100473 - AluYb8 SINE Alu -14 304 1 1959 151 31 0 chr1 196093237 196093528 -86100136 + AluSx SINE Alu 1 300 -12 1915 237 39 19 chr1 196093583 196094098 -86099566 - L1MC3 LINE L1 -1818 4328 3804 423 161 74 0 chr1 196094177 196094258 -86099406 - L1MB4 LINE L1 0 6180 6094 2142 111 10 10 chr1 196094439 196094737 -86098927 - AluSx SINE Alu -14 298 1 299 25 25 0 chr1 196094950 196094990 -86098674 + (CA)n Simple_repeat Simple_repeat 2 42 0 204 40 0 0 chr1 196094989 196095014 -86098650 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 204 344 176 0 chr1 196095564 196095689 -86097975 - MIR3 SINE MIR -22 186 40 2126 93 61 0 chr1 196095702 196095982 -86097682 - AluSp SINE Alu -16 297 1 28 29 0 0 chr1 196095989 196096024 -86097640 + AT_rich Low_complexity Low_complexity 1 35 0 2391 98 0 0 chr1 196096027 196096334 -86097330 + AluSq SINE Alu 1 307 -6 2022 132 3 3 chr1 196096399 196096702 -86096962 + AluSx SINE Alu 1 303 -9 1988 139 29 23 chr1 196096806 196097115 -86096549 + AluJo SINE Alu 1 311 -1 2163 125 3 3 chr1 196097541 196097852 -86095812 + AluSx SINE Alu 1 311 -1 1931 110 0 0 chr1 196098261 196098515 -86095149 + AluSq SINE Alu 1 254 -59 1750 159 24 3 chr1 196099238 196099534 -86094130 + AluJo SINE Alu 2 303 -9 1695 176 3 10 chr1 196101099 196101395 -86092269 + AluJo SINE Alu 1 294 -18 2097 115 37 0 chr1 196101400 196101696 -86091968 + AluSp SINE Alu 5 311 -2 183 302 0 0 chr1 196101946 196101989 -86091675 - L2 LINE L2 -20 3252 3210 536 271 151 9 chr1 196102035 196102253 -86091411 - MIR SINE MIR -3 259 11 724 177 28 14 chr1 196102303 196102444 -86091220 + L1MB8 LINE L1 6034 6176 -2 252 246 182 18 chr1 196102701 196102811 -86090853 - MIR SINE MIR -88 174 47 1759 143 63 7 chr1 196103733 196104020 -86089644 - AluSx SINE Alu -9 303 1 603 321 185 31 chr1 196104885 196105396 -86088268 + L2 LINE L2 1852 2283 -1031 2162 101 4 0 chr1 196105396 196105672 -86087992 + AluSq SINE Alu 2 278 -35 315 0 0 0 chr1 196105675 196105710 -86087954 + (CA)n Simple_repeat Simple_repeat 1 35 0 603 321 185 31 chr1 196105710 196105880 -86087784 + L2 LINE L2 2284 2643 -671 2379 74 0 3 chr1 196105952 196106249 -86087415 - AluY SINE Alu -14 297 2 222 177 16 16 chr1 196106322 196106384 -86087280 + (TTATA)n Simple_repeat Simple_repeat 5 66 0 1719 181 6 32 chr1 196106388 196106703 -86086961 - AluJb SINE Alu -5 307 1 1693 112 0 48 chr1 196106813 196107064 -86086600 + AluSq SINE Alu 1 239 -74 468 242 25 8 chr1 196107332 196107452 -86086212 + MLT1H LTR MaLR 93 214 -335 637 247 115 11 chr1 196107533 196107707 -86085957 + MLT1H LTR MaLR 366 557 -10 2170 102 3 3 chr1 196108213 196108528 -86085136 + AluSq SINE Alu 1 315 0 375 279 146 12 chr1 196108675 196108840 -86084824 - MIR SINE MIR -65 197 11 930 188 95 102 chr1 196109178 196109397 -86084267 - L1ME3A LINE L1 -15 6155 5936 2537 44 0 3 chr1 196109397 196109693 -86083971 + AluY SINE Alu 1 295 -16 930 188 95 102 chr1 196109693 196109751 -86083913 - L1ME3A LINE L1 -234 5936 5878 1627 193 20 0 chr1 196109751 196110047 -86083617 - AluJo SINE Alu -10 302 1 930 188 95 102 chr1 196110047 196110072 -86083592 - L1ME3A LINE L1 -292 5878 5854 205 161 0 36 chr1 196110719 196110775 -86082889 + GA-rich Low_complexity Low_complexity 2 55 0 2264 115 0 0 chr1 196110984 196111288 -86082376 + AluSx SINE Alu 1 304 -8 190 174 14 101 chr1 196111625 196111694 -86081970 + L2 LINE L2 3034 3096 -217 2057 124 7 3 chr1 196111846 196112136 -86081528 + AluSx SINE Alu 1 291 -21 341 283 119 0 chr1 196112161 196112320 -86081344 - MIR SINE MIR -13 249 72 303 70 0 0 chr1 196112446 196112489 -86081175 + L1MA3 LINE L1 6263 6305 0 415 231 102 0 chr1 196112569 196112677 -86080987 - L2 LINE L2 -2 3311 3193 1691 148 4 8 chr1 196112701 196112964 -86080700 - AluJb SINE Alu -11 301 40 1737 135 6 64 chr1 196114220 196114531 -86079133 + AluJb SINE Alu 1 293 -19 2449 74 0 6 chr1 196114791 196115102 -86078562 + AluY SINE Alu 1 309 -2 246 306 16 0 chr1 196115106 196115168 -86078496 + MIR SINE MIR 30 92 -116 22 35 0 0 chr1 196115307 196115336 -86078328 + AT_rich Low_complexity Low_complexity 1 29 0 598 177 9 0 chr1 196115588 196115701 -86077963 + MER3 DNA MER1_type 33 146 -63 26 0 0 0 chr1 196115718 196115744 -86077920 + AT_rich Low_complexity Low_complexity 1 26 0 2099 101 25 0 chr1 196115744 196116022 -86077642 - AluSc SINE Alu -24 285 1 327 131 16 0 chr1 196116022 196116083 -86077581 + L1MC2 LINE L1 5791 5852 -481 622 143 0 11 chr1 196116086 196116177 -86077487 + AluJ/FLAM SINE Alu 2 91 -221 2476 173 53 2 chr1 196116213 196116669 -86076995 + L1MC2 LINE L1 5850 6328 -16 297 189 38 0 chr1 196116676 196116729 -86076935 + MER3 DNA MER1_type 155 209 0 236 157 39 78 chr1 196116689 196116740 -86076924 - MER3 DNA MER1_type -120 89 41 * 2151 95 3 17 chr1 196117658 196117954 -86075710 - AluSg1 SINE Alu -17 292 1 820 167 0 8 chr1 196117974 196118100 -86075564 - AluSq/x SINE Alu -184 129 5 2156 131 0 0 chr1 196118208 196118499 -86075165 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr1 196118500 196118528 -86075136 + AT_rich Low_complexity Low_complexity 1 28 0 845 174 0 0 chr1 196118715 196118847 -86074817 - FLAM_C SINE Alu 0 133 2 25 31 0 0 chr1 196118865 196118897 -86074767 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr1 196118912 196118940 -86074724 + AT_rich Low_complexity Low_complexity 1 28 0 1189 139 79 9 chr1 196119804 196120020 -86073644 + L1MB5 LINE L1 5944 6174 0 243 0 0 0 chr1 196120073 196120100 -86073564 + (A)n Simple_repeat Simple_repeat 1 27 0 843 223 134 34 chr1 196120230 196120468 -86073196 + AluSg SINE Alu 17 278 -32 26 0 0 0 chr1 196121330 196121356 -86072308 + AT_rich Low_complexity Low_complexity 1 26 0 235 343 19 19 chr1 196121680 196121788 -86071876 + MIR SINE MIR 39 146 -62 2232 94 0 0 chr1 196123016 196123313 -86070351 + AluSx SINE Alu 1 297 -15 237 119 0 0 chr1 196124425 196124467 -86069197 + (CCG)n Simple_repeat Simple_repeat 1 42 0 200 200 22 0 chr1 196124497 196124542 -86069122 + (CCG)n Simple_repeat Simple_repeat 1 46 0 180 77 0 0 chr1 196124600 196124626 -86069038 + (TCC)n Simple_repeat Simple_repeat 1 26 0 200 293 20 80 chr1 196125434 196125584 -86068080 + L2 LINE L2 10 150 -3164 2260 89 38 0 chr1 196126263 196126554 -86067110 + AluSp SINE Alu 9 310 -3 1983 98 18 4 chr1 196126742 196127016 -86066648 + AluSc SINE Alu 1 278 -31 2279 89 0 7 chr1 196127017 196127310 -86066354 + AluSq SINE Alu 1 291 -22 1425 95 0 0 chr1 196127313 196127492 -86066172 + AluSc SINE Alu 126 304 -5 25 0 0 0 chr1 196127633 196127658 -86066006 + AT_rich Low_complexity Low_complexity 1 25 0 776 152 15 45 chr1 196127719 196127851 -86065813 + FLAM_C SINE Alu 1 128 -5 2292 103 0 0 chr1 196127872 196128164 -86065500 + AluSx SINE Alu 2 293 -19 1620 183 0 33 chr1 196128377 196128683 -86064981 + AluJb SINE Alu 15 310 -2 229 281 94 0 chr1 196128803 196128867 -86064797 + MIR SINE MIR 176 245 -17 2250 98 3 3 chr1 196129108 196129405 -86064259 - AluSc SINE Alu -12 297 1 2289 114 0 0 chr1 196129828 196130126 -86063538 + AluSq SINE Alu 1 298 -15 316 122 20 0 chr1 196131125 196131174 -86062490 - MLT1B LTR MaLR -2 388 339 1019 123 58 7 chr1 196131241 196131395 -86062269 - AluSg/x SINE Alu -14 296 135 348 228 26 72 chr1 196131404 196131466 -86062198 + L1M1 LINE L1 3344 3407 -4158 2159 118 0 0 chr1 196131466 196131754 -86061910 + AluSg SINE Alu 1 288 -22 279 79 0 0 chr1 196131759 196131797 -86061867 + (TA)n Simple_repeat Simple_repeat 2 39 0 348 228 26 72 chr1 196131797 196131921 -86061743 + L1M1 LINE L1 3411 3527 -4038 2743 20 0 3 chr1 196131943 196132244 -86061420 + L1PA3 LINE L1 5856 6155 0 562 162 11 187 chr1 196132250 196132426 -86061238 + L1M1 LINE L1 3484 3689 -3876 2214 100 0 0 chr1 196132426 196132707 -86060957 + AluSq SINE Alu 24 304 -9 1260 189 15 111 chr1 196132711 196133044 -86060620 + AluJo SINE Alu 2 302 0 562 162 11 187 chr1 196133044 196133089 -86060575 + L1M1 LINE L1 3692 3664 -3901 1944 156 86 13 chr1 196133089 196133403 -86060261 + MER1B DNA MER1_type 1 337 0 562 162 11 187 chr1 196133403 196133437 -86060227 + L1M1 LINE L1 3663 3701 -3864 431 305 7 47 chr1 196134117 196134362 -86059302 + MIR SINE MIR 29 260 -2 186 305 140 67 chr1 196134397 196134437 -86059227 - MER5B DNA MER1_type -2 176 140 1863 178 3 3 chr1 196134437 196134746 -86058918 + AluJb SINE Alu 3 311 -1 186 305 140 67 chr1 196134746 196134869 -86058795 - MER5B DNA MER1_type -38 140 1 1066 220 5 45 chr1 196134881 196135104 -86058560 - MER58A DNA MER1_type -4 220 7 1566 165 57 30 chr1 196136371 196136668 -86056996 + AluJb SINE Alu 3 307 -5 270 194 0 45 chr1 196136668 196136735 -86056929 + LTR67 LTR ERVL 461 524 -33 607 84 0 0 chr1 196137227 196137310 -86056354 - Alu SINE Alu 0 311 229 886 287 46 92 chr1 196137574 196137629 -86056035 - L2 LINE L2 -11 3261 3205 2160 94 49 0 chr1 196137629 196137915 -86055749 - AluSx SINE Alu -12 300 1 886 287 46 92 chr1 196137915 196138360 -86055304 - L2 LINE L2 -67 3205 2772 311 174 139 35 chr1 196138416 196138531 -86055133 - MER53 DNA DNA -3 186 60 936 167 12 19 chr1 196138553 196138715 -86054949 - AluJo SINE Alu -30 282 122 545 198 0 0 chr1 196138766 196138852 -86054812 + AluJ/FLAM SINE Alu 2 87 -225 491 326 63 0 chr1 196138880 196139055 -86054609 - MIR SINE MIR -47 215 30 307 269 97 2 chr1 196139410 196139599 -86054065 + LTR33A LTR ERVL 277 514 -9 29 0 0 0 chr1 196139703 196139732 -86053932 + AT_rich Low_complexity Low_complexity 1 29 0 1798 163 0 7 chr1 196139807 196140090 -86053574 + AluJb SINE Alu 1 281 -31 228 111 0 0 chr1 196140092 196140128 -86053536 + (TA)n Simple_repeat Simple_repeat 2 37 0 2192 112 16 0 chr1 196140819 196141123 -86052541 - AluSg SINE Alu -1 309 1 939 119 0 0 chr1 196141134 196141260 -86052404 - AluSq/x SINE Alu -186 126 1 735 267 58 17 chr1 196141263 196141503 -86052161 - MIR SINE MIR -6 256 7 1945 149 3 13 chr1 196141648 196141949 -86051715 + AluJo SINE Alu 1 298 -14 915 138 0 23 chr1 196142210 196142340 -86051324 + FLAM_C SINE Alu 1 127 -6 740 299 86 0 chr1 196142739 196142973 -86050691 - MIR SINE MIR -4 258 5 1198 156 11 0 chr1 196143390 196143576 -86050088 + Tigger4(Zombi) DNA MER2_type 1 188 -2543 1918 132 0 30 chr1 196143591 196143830 -86049834 + Tigger4(Zombi) DNA MER2_type 2359 2589 -142 1232 235 19 26 chr1 196143830 196144141 -86049523 + AluJo SINE Alu 1 309 -3 1918 132 0 30 chr1 196144141 196144205 -86049459 + Tigger4(Zombi) DNA MER2_type 2589 2653 -78 2087 127 3 3 chr1 196144205 196144496 -86049168 - AluSg1 SINE Alu -15 294 4 1124 68 0 0 chr1 196144504 196144637 -86049027 - AluSq/x SINE Alu -179 133 1 2156 116 7 10 chr1 196144696 196144999 -86048665 - AluSx SINE Alu -10 302 1 1582 157 30 43 chr1 196145091 196145258 -86048406 - AluJo SINE Alu -11 301 133 225 83 0 0 chr1 196145258 196145294 -86048370 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2056 122 4 0 chr1 196145294 196145573 -86048091 - AluSp SINE Alu -31 282 3 1582 157 30 43 chr1 196145573 196145709 -86047955 - AluJo SINE Alu -177 135 1 1013 139 0 78 chr1 196145935 196146115 -86047549 - AluJo SINE Alu -15 297 132 2247 81 0 3 chr1 196146132 196146417 -86047247 + AluY SINE Alu 1 284 -27 186 133 0 0 chr1 196146418 196146448 -86047216 + (TA)n Simple_repeat Simple_repeat 2 31 0 226 178 0 0 chr1 196146465 196146510 -86047154 - LTR66 LTR ERVL -171 439 395 * 241 174 0 0 chr1 196146471 196146517 -86047147 + LTR66 LTR ERVL 394 439 -171 794 153 51 0 chr1 196146540 196146658 -86047006 - AluJo SINE Alu -181 131 8 264 176 11 99 chr1 196147665 196147720 -86045944 - L1MC5 LINE L1 -45 7916 7870 2215 118 3 6 chr1 196147720 196148033 -86045631 + AluSx SINE Alu 1 312 0 264 176 11 99 chr1 196148033 196148068 -86045596 - L1MC5 LINE L1 -91 7870 7834 1972 162 3 0 chr1 196148183 196148491 -86045173 - AluSx SINE Alu -3 309 1 335 268 31 8 chr1 196148576 196148703 -86044961 - HAL1 LINE L1 -136 2371 2242 456 277 17 0 chr1 196148703 196148822 -86044842 - L2 LINE L2 -12 3301 3181 335 275 78 21 chr1 196148833 196148975 -86044689 - HAL1 LINE L1 -295 2212 2063 1529 144 130 62 chr1 196148981 196149320 -86044344 - MLT1A1 LTR MaLR -3 362 1 868 194 61 0 chr1 196149408 196149573 -86044091 - FAM SINE Alu 0 175 1 1258 264 148 17 chr1 196149680 196150266 -86043398 - HAL1 LINE L1 -741 1766 1104 2122 106 42 22 chr1 196150282 196150593 -86043071 + MER1B DNA MER1_type 1 317 -22 458 249 54 27 chr1 196150609 196150794 -86042870 - HAL1 LINE L1 -1423 1084 895 296 261 14 0 chr1 196150890 196150959 -86042705 - HAL1 LINE L1 -2434 73 4 238 313 16 0 chr1 196151090 196151154 -86042510 + tRNA-Ile-ATT tRNA tRNA 2 66 -11 1955 132 14 0 chr1 196151581 196151861 -86041803 - AluSx SINE Alu -26 286 3 998 246 79 58 chr1 196151873 196152202 -86041462 - LTR16A LTR ERVL -56 394 59 3320 108 21 85 chr1 196152227 196152790 -86040874 + MER1A DNA MER1_type 1 527 -2 1323 140 100 59 chr1 196153317 196153588 -86040076 + AluJb SINE Alu 22 303 -9 189 175 0 0 chr1 196153656 196153696 -86039968 + CT-rich Low_complexity Low_complexity 1 40 0 2078 113 3 39 chr1 196153777 196154087 -86039577 - AluSx SINE Alu -12 300 2 244 329 186 0 chr1 196154920 196155060 -86038604 - L3 LINE CR1 -1202 375 210 1977 139 14 3 chr1 196155433 196155727 -86037937 + AluJb SINE Alu 1 297 -15 271 309 123 85 chr1 196155739 196155975 -86037689 + MIR SINE MIR 6 250 -12 4839 143 28 33 chr1 196156091 196156804 -86036860 - L1MA4 LINE L1 -106 6194 5485 2110 125 7 0 chr1 196156804 196157099 -86036565 - AluSx SINE Alu -13 299 3 4839 143 28 33 chr1 196157099 196157253 -86036411 - L1MA4 LINE L1 -815 5485 5332 1923 164 7 3 chr1 196157253 196157546 -86036118 - AluSx SINE Alu -15 297 4 1948 106 8 0 chr1 196157557 196157822 -86035842 - AluSp SINE Alu -16 297 31 3923 107 101 128 chr1 196157825 196159221 -86034443 - pTR5 LTR ERV1 0 2438 743 4310 149 9 20 chr1 196159259 196159526 -86034138 - L1MA4 LINE L1 -805 5341 5073 2170 125 0 3 chr1 196159526 196159831 -86033833 + AluSx SINE Alu 2 305 -7 4310 149 9 20 chr1 196159831 196160326 -86033338 - L1MA4 LINE L1 -1073 5073 4587 2008 145 0 3 chr1 196160326 196160629 -86033035 - AluJb SINE Alu -10 302 1 13836 141 36 28 chr1 196160629 196161526 -86032138 + Ricksha DNA DNA 272 1160 -2086 2271 103 0 10 chr1 196161526 196161827 -86031837 + AluSx SINE Alu 1 298 -14 13836 141 36 28 chr1 196161827 196162709 -86030955 + Ricksha DNA DNA 1160 2034 -1212 2035 139 3 3 chr1 196162709 196163010 -86030654 - AluSx SINE Alu -11 301 1 13836 141 36 28 chr1 196163010 196163394 -86030270 + Ricksha DNA DNA 2034 2457 -789 210 71 0 0 chr1 196163394 196163422 -86030242 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 13836 141 36 28 chr1 196163422 196163549 -86030115 + Ricksha DNA DNA 2457 2582 -664 898 107 16 0 chr1 196163550 196163671 -86029993 - AluSg/x SINE Alu -18 294 172 1491 165 69 0 chr1 196163672 196163932 -86029732 + Ricksha DNA DNA 2584 2861 -385 331 125 28 28 chr1 196163941 196164013 -86029651 + CT-rich Low_complexity Low_complexity 2 73 0 654 104 0 0 chr1 196164076 196164172 -86029492 + (TTCC)n Simple_repeat Simple_repeat 2 97 0 1853 133 3 68 chr1 196164188 196164511 -86029153 - AluSx SINE Alu -10 302 1 1496 129 15 94 chr1 196164512 196164669 -86028995 + Ricksha DNA DNA 2930 3047 -204 1372 193 44 4 chr1 196164669 196164943 -86028721 - AluJb SINE Alu -27 285 1 1496 129 15 94 chr1 196164943 196165126 -86028538 + Ricksha DNA DNA 3047 3243 -8 355 305 68 86 chr1 196165678 196166029 -86027635 + L2 LINE L2 2230 2574 -740 1429 198 35 14 chr1 196166066 196166354 -86027310 + AluJo SINE Alu 1 294 -18 189 0 0 0 chr1 196166533 196166554 -86027110 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2130 87 4 0 chr1 196166555 196166831 -86026833 - AluSx SINE Alu -33 279 3 1039 170 40 25 chr1 196166856 196167056 -86026608 - HAL1 LINE L1 -762 1745 1543 * 6566 101 31 66 chr1 196167041 196167360 -86026304 + L1MA3 LINE L1 5039 5368 -937 2051 136 3 10 chr1 196167360 196167661 -86026003 + AluSx SINE Alu 1 299 -13 6566 101 31 66 chr1 196167661 196167731 -86025933 + L1MA3 LINE L1 5368 5439 -866 270 0 0 0 chr1 196167731 196167761 -86025903 + (GAA)n Simple_repeat Simple_repeat 2 31 0 6566 101 31 66 chr1 196167761 196168681 -86024983 + L1MA3 LINE L1 5439 6305 0 240 191 79 16 chr1 196168701 196168764 -86024900 - HAL1 LINE L1 -937 1570 1504 1911 227 163 31 chr1 196168765 196169316 -86024348 - MLT1E3 LTR MaLR 0 624 1 1878 249 111 59 chr1 196169316 196169822 -86023842 - HAL1 LINE L1 -1000 1507 934 2123 147 0 0 chr1 196169822 196170128 -86023536 - AluSx SINE Alu -5 307 2 1878 249 111 59 chr1 196170128 196170506 -86023158 - HAL1 LINE L1 -1573 934 577 280 294 96 14 chr1 196171182 196171328 -86022336 - L1ME4a LINE L1 -18 6103 5946 29 47 0 0 chr1 196171328 196171371 -86022293 + AT_rich Low_complexity Low_complexity 1 43 0 855 261 23 66 chr1 196171440 196171697 -86021967 + MIR SINE MIR 17 262 0 490 229 11 90 chr1 196171721 196171798 -86021866 - L1ME4a LINE L1 -315 5806 5724 2012 97 66 3 chr1 196171798 196172086 -86021578 - AluSq SINE Alu -7 306 1 2204 93 3 45 chr1 196172091 196172264 -86021400 - AluSq SINE Alu -15 298 119 194 0 39 0 chr1 196172264 196172290 -86021374 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2359 49 0 7 chr1 196172290 196172574 -86021090 - AluY SINE Alu -29 282 1 2204 93 3 45 chr1 196172574 196172710 -86020954 - AluSq SINE Alu -192 121 1 490 229 11 90 chr1 196172710 196172814 -86020850 - L1ME4a LINE L1 -401 5720 5634 317 333 14 14 chr1 196172835 196172973 -86020691 + L2 LINE L2 3175 3312 -1 239 272 11 22 chr1 196173322 196173414 -86020250 - LTR67 LTR ERVL -17 540 450 1987 130 43 0 chr1 196174085 196174384 -86019280 - AluSx SINE Alu 0 312 1 618 359 63 25 chr1 196174577 196174942 -86018722 + L2 LINE L2 2523 2901 -413 201 74 0 0 chr1 196174943 196174970 -86018694 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 344 293 92 79 chr1 196174970 196175373 -86018291 + L2 LINE L2 2892 3299 -14 2206 107 10 0 chr1 196175410 196175710 -86017954 - AluSx SINE Alu -8 304 2 535 147 11 0 chr1 196175784 196175879 -86017785 - L1PA15 LINE L1 -148 6017 5922 1609 146 90 0 chr1 196176217 196176485 -86017179 + AluJb SINE Alu 5 296 -16 242 338 60 45 chr1 196176762 196176895 -86016769 - MIR SINE MIR -112 150 16 230 313 30 0 chr1 196177421 196177488 -86016176 + L2 LINE L2 3242 3310 -3 630 283 114 9 chr1 196177716 196177935 -86015729 + MIR SINE MIR 20 261 -1 23 0 0 0 chr1 196178209 196178232 -86015432 + AT_rich Low_complexity Low_complexity 1 23 0 375 228 27 81 chr1 196178278 196178427 -86015237 - HAL1 LINE L1 -4 2503 2363 253 0 54 0 chr1 196178455 196178492 -86015172 + (TA)n Simple_repeat Simple_repeat 2 40 0 2267 115 0 0 chr1 196178585 196178889 -86014775 + AluSx SINE Alu 1 304 -8 2168 122 0 13 chr1 196178896 196179207 -86014457 + AluSx SINE Alu 5 311 -1 706 218 53 68 chr1 196179228 196179494 -86014170 - HAL1 LINE L1 -1499 1008 747 298 302 16 39 chr1 196179756 196179885 -86013779 - HAL1 LINE L1 -1943 564 439 361 229 14 0 chr1 196179891 196179961 -86013703 - MER5A DNA MER1_type -2 187 117 1657 145 90 13 chr1 196179962 196180476 -86013188 + MER51A LTR ERV1 1 625 -9 448 229 128 0 chr1 196180495 196180604 -86013060 - MER5A DNA MER1_type -66 123 1 588 264 57 101 chr1 196180662 196180802 -86012862 - HAL1 LINE L1 -2155 352 207 279 0 0 0 chr1 196180802 196180833 -86012831 + (CA)n Simple_repeat Simple_repeat 2 32 0 588 264 57 101 chr1 196180833 196181060 -86012604 - HAL1 LINE L1 -2300 207 1 397 254 114 9 chr1 196181059 196181173 -86012491 - HAL1b LINE L1 -40 1308 1183 * 2267 108 7 0 chr1 196181179 196181486 -86012178 + AluSc SINE Alu 1 309 0 21 104 0 0 chr1 196181524 196181601 -86012063 + AT_rich Low_complexity Low_complexity 1 77 0 3923 120 20 62 chr1 196181624 196182726 -86010938 + L1M1 LINE L1 4709 5769 -531 219 158 0 0 chr1 196182742 196182780 -86010884 + A-rich Low_complexity Low_complexity 1 38 0 4134 117 53 6 chr1 196182782 196183423 -86010241 + L1PBa LINE L1 120 790 -6073 4814 121 77 7 chr1 196183428 196183979 -86009685 + L1PBa LINE L1 2156 2667 -4195 186 43 0 0 chr1 196183979 196184002 -86009662 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4814 121 77 7 chr1 196184002 196184624 -86009040 + L1PBa LINE L1 2667 3410 -3452 1983 185 31 22 chr1 196184605 196184762 -86008902 + L1 LINE L1 4549 4703 -1443 * 2139 100 27 7 chr1 196184762 196185062 -86008602 + AluSq SINE Alu 1 306 -7 1983 185 31 22 chr1 196185062 196185358 -86008306 + L1 LINE L1 4703 5006 -1140 1135 141 6 0 chr1 196185361 196185531 -86008133 + AluJb SINE Alu 2 172 -140 1970 92 12 0 chr1 196185531 196185782 -86007882 - AluSx SINE Alu -58 254 1 5668 214 47 96 chr1 196185782 196186249 -86007415 - L1M4 LINE L1 -1732 4414 3926 1792 179 10 0 chr1 196186249 196186546 -86007118 - AluJb SINE Alu -11 301 2 2072 123 3 0 chr1 196186552 196186866 -86006798 - AluSq SINE Alu 0 315 1 5668 214 47 96 chr1 196186866 196187157 -86006507 - L1M4 LINE L1 -2225 3921 3617 183 42 0 0 chr1 196187157 196187181 -86006483 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 5668 214 47 96 chr1 196187181 196187350 -86006314 - L1M4 LINE L1 -2529 3617 3441 4366 94 5 0 chr1 196187350 196187916 -86005748 - L1PA13 LINE L1 0 6163 5595 5668 214 47 96 chr1 196187916 196189320 -86004344 - L1M4 LINE L1 -2705 3441 2191 2496 70 7 0 chr1 196189320 196189621 -86004043 - AluY SINE Alu -8 303 1 5668 214 47 96 chr1 196189621 196189674 -86003990 - L1M4 LINE L1 -3955 2191 2137 726 221 23 23 chr1 196189682 196189854 -86003810 - AluJo SINE Alu -21 291 120 6939 72 9 10 chr1 196189879 196190381 -86003283 - L1PA11 LINE L1 -4 6170 5669 2303 112 3 0 chr1 196190381 196190684 -86002980 + AluSx SINE Alu 1 304 -8 6939 72 9 10 chr1 196190684 196191882 -86001782 - L1PA11 LINE L1 -505 5669 4474 2298 209 10 17 chr1 196191882 196192430 -86001234 - L1PA12 LINE L1 -5085 2499 1179 1106 287 77 75 chr1 196192834 196193340 -86000324 - ERVL LTR ERVL -4038 1726 1216 1977 89 0 62 chr1 196193340 196193632 -86000032 - AluSg SINE Alu -9 301 28 1106 287 77 75 chr1 196193632 196193849 -85999815 - ERVL LTR ERVL -4548 1216 1001 2400 234 127 21 chr1 196193998 196194749 -85998915 - L2 LINE L2 -1077 2237 1408 1237 213 43 46 chr1 196194761 196195302 -85998362 - L1ME2 LINE L1 -3 6167 5660 460 314 80 47 chr1 196195326 196195625 -85998039 + L2 LINE L2 2255 2563 -751 1798 134 45 17 chr1 196195657 196195775 -85997889 + AluJb SINE Alu 1 114 -198 284 0 28 0 chr1 196195775 196195811 -85997853 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1798 134 45 17 chr1 196195811 196195984 -85997680 + AluJb SINE Alu 114 300 -12 209 308 68 55 chr1 196195989 196196135 -85997529 + L2 LINE L2 2698 2845 -469 2392 102 0 0 chr1 196196331 196196635 -85997029 - AluSx SINE Alu -8 304 1 249 250 158 26 chr1 196196683 196196759 -85996905 + L2 LINE L2 3228 3313 0 2214 112 3 0 chr1 196196825 196197120 -85996544 - AluSx SINE Alu -16 296 1 1683 165 0 31 chr1 196197166 196197478 -85996186 - AluJb SINE Alu 0 303 1 21 71 0 0 chr1 196197481 196197523 -85996141 + AT_rich Low_complexity Low_complexity 1 42 0 377 125 18 0 chr1 196197531 196197587 -85996077 - U7 snRNA snRNA -1 62 6 22 0 0 0 chr1 196197591 196197613 -85996051 + AT_rich Low_complexity Low_complexity 1 22 0 703 173 8 55 chr1 196197614 196197741 -85995923 - FLAM_A SINE Alu -12 121 1 2867 118 31 17 chr1 196199144 196199566 -85994098 + MSTA LTR MaLR 1 428 0 310 361 84 5 chr1 196199963 196200165 -85993499 + L2 LINE L2 2097 2314 -1000 687 311 37 28 chr1 196200635 196200989 -85992675 - ERVL LTR ERVL -1924 3840 3484 4409 127 15 9 chr1 196200999 196201666 -85991998 - Tigger1 DNA MER2_type -8 2410 1740 * 10971 119 5 14 chr1 196201663 196203274 -85990390 - Tigger1 DNA MER2_type -821 1597 1 2139 113 10 3 chr1 196203391 196203691 -85989973 - AluSc SINE Alu -7 302 1 1928 162 0 6 chr1 196203699 196204013 -85989651 - AluJb SINE Alu 0 312 1 24 0 0 0 chr1 196204023 196204047 -85989617 + AT_rich Low_complexity Low_complexity 1 24 0 1696 168 6 35 chr1 196204088 196204404 -85989260 - AluSx SINE Alu 0 312 6 1258 174 94 76 chr1 196204414 196204635 -85989029 - AluJo SINE Alu -19 293 64 1856 152 0 26 chr1 196204635 196204944 -85988720 + AluJo SINE Alu 1 301 -11 1258 174 94 76 chr1 196204944 196205010 -85988654 - AluJo SINE Alu -248 64 1 22 0 0 0 chr1 196205010 196205032 -85988632 + AT_rich Low_complexity Low_complexity 1 22 0 1341 186 0 39 chr1 196205082 196205178 -85988486 + Tigger1 DNA MER2_type 199 297 -2121 2393 86 7 0 chr1 196205178 196205481 -85988183 + AluSp SINE Alu 1 305 -8 1341 186 0 39 chr1 196205481 196205642 -85988022 + Tigger1 DNA MER2_type 297 446 -1972 903 333 55 10 chr1 196205753 196206414 -85987250 + ERVL LTR ERVL 2929 3652 -2002 328 293 93 14 chr1 196206463 196206603 -85987061 - L2 LINE L2 -938 2376 2226 1480 317 27 6 chr1 196206603 196207130 -85986534 + ERVL LTR ERVL 3766 4303 -1461 527 200 9 0 chr1 196207140 196207250 -85986414 + L2 LINE L2 1930 2040 -1274 2308 158 6 3 chr1 196207251 196207606 -85986058 - MER50-int LTR ERV1 -6849 356 1 1363 108 22 40 chr1 196207621 196207774 -85985890 - MER50 LTR ERV1 -17 717 567 2121 106 0 3 chr1 196207774 196208107 -85985557 + AluSx SINE Alu 1 332 0 1363 108 22 40 chr1 196208107 196208175 -85985489 - MER50 LTR ERV1 -167 567 499 2271 272 88 39 chr1 196208175 196208279 -85985385 + L2 LINE L2 2030 2127 -1186 2314 113 0 0 chr1 196208279 196208580 -85985084 - AluSx SINE Alu -11 301 1 2271 272 88 39 chr1 196208580 196208907 -85984757 + L2 LINE L2 2127 2436 -877 1925 113 99 0 chr1 196208907 196209190 -85984474 - AluSx SINE Alu -1 311 1 2271 272 88 39 chr1 196209190 196209786 -85983878 + L2 LINE L2 2436 3189 -124 2167 132 0 3 chr1 196209885 196210196 -85983468 - AluSx SINE Alu -2 310 1 1236 223 50 74 chr1 196210206 196210237 -85983427 - L1MC4 LINE L1 0 8042 8012 1948 159 0 7 chr1 196210237 196210538 -85983126 + AluJo SINE Alu 1 299 -13 1236 223 50 74 chr1 196210538 196210648 -85983016 - L1MC4 LINE L1 -30 8012 7901 216 0 0 0 chr1 196210648 196210672 -85982992 + (CA)n Simple_repeat Simple_repeat 2 25 0 1236 223 50 74 chr1 196210672 196211044 -85982620 - L1MC4 LINE L1 -141 7901 7540 23 0 0 0 chr1 196211045 196211068 -85982596 + AT_rich Low_complexity Low_complexity 1 23 0 839 340 77 9 chr1 196211088 196211532 -85982132 + ERVL LTR ERVL 4851 5324 -440 489 234 44 38 chr1 196211533 196211673 -85981991 + HAL1 LINE L1 602 745 -1762 2423 109 48 31 chr1 196211673 196212031 -85981633 + THE1B LTR MaLR 1 364 0 489 234 44 38 chr1 196212031 196212048 -85981616 + HAL1 LINE L1 745 760 -1747 * 790 264 157 29 chr1 196212034 196212063 -85981601 + HAL1 LINE L1 1506 1530 -977 2110 176 28 6 chr1 196212063 196212420 -85981244 + MLT1A1 LTR MaLR 1 365 0 790 264 157 29 chr1 196212420 196213223 -85980441 + HAL1 LINE L1 1530 2477 -30 1102 181 100 129 chr1 196213646 196213970 -85979694 + MLT1A1 LTR MaLR 6 320 -45 2203 105 0 0 chr1 196213970 196214282 -85979382 + AluSx SINE Alu 1 312 0 1102 181 100 129 chr1 196214282 196214327 -85979337 + MLT1A1 LTR MaLR 320 365 0 1975 154 7 0 chr1 196214409 196214702 -85978962 - AluJb SINE Alu -16 296 2 1971 135 87 0 chr1 196215541 196215875 -85977789 + L1MA4 LINE L1 5935 6297 -3 259 271 158 15 chr1 196216227 196216360 -85977304 - MIR SINE MIR -100 162 11 262 294 104 81 chr1 196217056 196217267 -85976397 + LTR67 LTR ERVL 2 217 -340 318 239 130 0 chr1 196217558 196217650 -85976014 + LTR67 LTR ERVL 386 489 -68 1645 184 7 10 chr1 196217650 196217944 -85975720 - AluJo SINE Alu -18 294 2 207 0 0 0 chr1 196217944 196217967 -85975697 + (A)n Simple_repeat Simple_repeat 1 23 0 2151 160 16 40 chr1 196217991 196218365 -85975299 + MLT1A1 LTR MaLR 1 365 0 278 253 12 12 chr1 196218365 196218448 -85975216 + LTR67 LTR ERVL 475 557 0 22 0 0 0 chr1 196219070 196219092 -85974572 + AT_rich Low_complexity Low_complexity 1 22 0 627 261 133 74 chr1 196219128 196219334 -85974330 - L1ME4a LINE L1 -115 6006 5814 2366 96 0 3 chr1 196219334 196219635 -85974029 - AluSg SINE Alu -9 301 2 627 261 133 74 chr1 196219635 196219652 -85974012 - L1ME4a LINE L1 -307 5814 5799 1687 138 12 4 chr1 196219652 196219905 -85973759 - AluJo SINE Alu -55 257 3 627 261 133 74 chr1 196219905 196220332 -85973332 - L1ME4a LINE L1 -322 5799 5316 873 174 0 0 chr1 196220776 196220908 -85972756 - FLAM_C SINE Alu 0 133 2 206 167 0 21 chr1 196222188 196222236 -85971428 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1885 135 21 0 chr1 196222239 196222521 -85971143 - AluSx SINE Alu -24 288 1 1167 306 65 41 chr1 196222885 196223165 -85970499 - L2 LINE L2 -264 3008 2736 2198 109 3 0 chr1 196223165 196223459 -85970205 - AluSq SINE Alu -18 295 1 1167 306 65 41 chr1 196223459 196223855 -85969809 - L2 LINE L2 -536 2736 2326 1926 155 24 106 chr1 196223877 196224302 -85969362 - MLT1B LTR MaLR 0 390 1 854 178 0 7 chr1 196224364 196224499 -85969165 + FRAM SINE Alu 29 162 -14 4881 100 10 20 chr1 196224501 196225069 -85968595 + L1MA3 LINE L1 5499 6060 -245 2764 112 72 8 chr1 196225069 196225471 -85968193 - MSTA LTR MaLR 0 428 1 4881 100 10 20 chr1 196225471 196225615 -85968049 + L1MA3 LINE L1 6060 6204 -101 2709 126 62 7 chr1 196225616 196226022 -85967642 + MSTA LTR MaLR 1 428 0 9834 153 22 18 chr1 196226035 196227665 -85965999 + MSTA-int LTR MaLR 15 1651 0 809 74 9 0 chr1 196227665 196227773 -85965891 + MSTA LTR MaLR 1 109 -319 28079 131 9 14 chr1 196227784 196234191 -85959473 - L1PA8A LINE L1 -2 6444 7 1794 152 70 9 chr1 196234191 196234507 -85959157 + MSTA LTR MaLR 94 428 0 1243 230 50 30 chr1 196234541 196234603 -85959061 + L1ME1 LINE L1 5713 5772 -394 1265 221 4 25 chr1 196234603 196234847 -85958817 - MER8 DNA MER2_type 0 239 1 1243 230 50 30 chr1 196234847 196235184 -85958480 + L1ME1 LINE L1 5772 6120 -46 1700 186 3 10 chr1 196235184 196235474 -85958190 + AluJo SINE Alu 1 288 -24 544 192 35 99 chr1 196235474 196235540 -85958124 + L1MA10 LINE L1 6260 6329 -5 2333 100 7 3 chr1 196235810 196236120 -85957544 + AluSx SINE Alu 1 311 -1 1257 232 105 27 chr1 196236186 196236555 -85957109 + MLT1H LTR MaLR 48 488 -61 303 203 43 0 chr1 196236616 196236685 -85956979 + MIR SINE MIR 90 161 -101 367 222 12 30 chr1 196236685 196236852 -85956812 + (TTTA)n Simple_repeat Simple_repeat 3 166 0 235 245 0 0 chr1 196236852 196236901 -85956763 + MIR SINE MIR 189 237 -25 2649 50 0 0 chr1 196237145 196237447 -85956217 - AluY SINE Alu -9 302 1 1620 247 56 48 chr1 196237532 196238034 -85955630 + L2 LINE L2 1930 2435 -879 385 241 35 0 chr1 196238429 196238599 -85955065 + (TA)n Simple_repeat Simple_repeat 1 176 0 2192 124 3 0 chr1 196239437 196239736 -85953928 - AluSx SINE Alu -12 300 1 280 329 52 52 chr1 196239744 196239899 -85953765 - MIR SINE MIR -75 187 33 1996 159 0 0 chr1 196239908 196240204 -85953460 - AluSx SINE Alu -15 297 2 809 187 0 0 chr1 196240283 196240417 -85953247 - AluJo SINE Alu -178 134 1 204 235 0 0 chr1 196241174 196241225 -85952439 + (TA)n Simple_repeat Simple_repeat 2 52 0 27 0 0 0 chr1 196241245 196241272 -85952392 + AT_rich Low_complexity Low_complexity 1 27 0 3343 256 100 24 chr1 196241345 196242428 -85951236 + L2 LINE L2 1060 2224 -1090 267 157 0 0 chr1 196242432 196242483 -85951181 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 164 49 16 chr1 196242527 196242588 -85951076 + LTR66 LTR ERVL 401 463 -147 2169 210 165 82 chr1 196242989 196243637 -85950027 + L1MC4 LINE L1 6442 7035 -773 1991 127 0 3 chr1 196243637 196243978 -85949686 + AluSx SINE Alu 1 340 0 2169 210 165 82 chr1 196243978 196244001 -85949663 + L1MC4 LINE L1 7035 7055 -753 1486 179 19 55 chr1 196244001 196244313 -85949351 + AluJb SINE Alu 2 302 -10 2169 210 165 82 chr1 196244313 196244874 -85948790 + L1MC4 LINE L1 7055 7713 -95 304 278 89 0 chr1 196245004 196245094 -85948570 + L2 LINE L2 2217 2314 -1000 1302 152 29 0 chr1 196245095 196245299 -85948365 + AluJo SINE Alu 84 293 -19 2125 126 0 16 chr1 196245301 196245610 -85948054 + AluSx SINE Alu 1 304 -8 234 83 104 21 chr1 196245611 196245659 -85948005 + L2 LINE L2 2305 2356 -958 25396 106 119 70 chr1 196245669 196250570 -85943094 + L1PA7 LINE L1 12 5224 -930 2880 10 0 0 chr1 196250570 196250878 -85942786 - AluY SINE Alu -3 308 1 25396 106 119 70 chr1 196250878 196251513 -85942151 + L1PA7 LINE L1 5224 5826 -328 24 0 0 0 chr1 196251884 196251908 -85941756 + AT_rich Low_complexity Low_complexity 1 24 0 2317 89 3 0 chr1 196252032 196252323 -85941341 + AluSx SINE Alu 1 292 -20 1717 165 11 21 chr1 196252525 196252838 -85940826 - AluJo SINE Alu 0 310 1 1843 149 0 0 chr1 196252843 196253118 -85940546 - AluJb SINE Alu -14 298 24 851 272 45 50 chr1 196253235 196253705 -85939959 - MLT1J LTR MaLR -6 505 1 1478 200 25 11 chr1 196255158 196255443 -85938221 + AluJo SINE Alu 1 289 -23 234 150 0 0 chr1 196255477 196255517 -85938147 + (A)n Simple_repeat Simple_repeat 1 40 0 1117 188 68 37 chr1 196255646 196255994 -85937670 + L1ME1 LINE L1 5812 6331 -3 382 221 19 10 chr1 196256023 196256127 -85937537 - L1MC5 LINE L1 -457 7504 7400 1708 143 77 0 chr1 196256143 196256416 -85937248 - AluJo SINE Alu -18 294 1 390 206 10 31 chr1 196256489 196256586 -85937078 + L1MC5 LINE L1 7818 7912 -49 315 343 83 0 chr1 196256608 196256716 -85936948 + MER5A DNA MER1_type 73 189 0 2375 109 0 0 chr1 196256839 196257151 -85936513 + AluSx SINE Alu 1 312 0 2255 92 0 20 chr1 196257194 196257500 -85936164 + AluSq SINE Alu 1 300 -13 2337 92 7 0 chr1 196258185 196258480 -85935184 + AluSx SINE Alu 1 297 -15 388 254 102 87 chr1 196258534 196258809 -85934855 - MLT1K LTR MaLR -183 405 127 867 158 23 0 chr1 196258970 196259103 -85934561 - FLAM_C SINE Alu -7 136 1 537 291 209 0 chr1 196259188 196259408 -85934256 - Charlie8 DNA MER1_type -2142 275 10 238 284 42 53 chr1 196260584 196260679 -85932985 - L2 LINE L2 0 3272 3179 210 340 0 19 chr1 196261522 196261628 -85932036 + C-rich Low_complexity Low_complexity 3 106 0 2157 85 11 0 chr1 196263309 196263629 -85930035 - AluSp SINE Alu 0 323 1 1703 145 0 24 chr1 196263817 196264113 -85929551 - AluJo SINE Alu -14 298 10 261 119 0 0 chr1 196264839 196264881 -85928783 + (T)n Simple_repeat Simple_repeat 1 42 0 759 11 0 0 chr1 196264881 196264968 -85928696 - L1PA2 LINE L1 0 6155 6069 1189 14 0 0 chr1 196264968 196265110 -85928554 + L1PA2 LINE L1 5931 6072 -83 346 287 56 9 chr1 196266480 196266588 -85927076 + MER112 DNA MER1_type 10 122 -138 781 211 63 26 chr1 196266601 196266791 -85926873 - MER63A DNA MER1_type -13 197 1 337 228 98 16 chr1 196266791 196266906 -85926758 + MER112 DNA MER1_type 127 251 -9 216 317 92 9 chr1 196266917 196267024 -85926640 - MIR3 SINE MIR -49 159 39 2056 111 37 3 chr1 196267241 196267539 -85926125 - AluSq SINE Alu -5 308 1 1631 171 10 16 chr1 196267584 196267888 -85925776 - AluJo SINE Alu -10 302 1 276 291 0 12 chr1 196269426 196269512 -85924152 + (TA)n Simple_repeat Simple_repeat 2 86 0 2268 123 0 0 chr1 196270072 196270380 -85923284 + AluSx SINE Alu 1 308 -4 528 103 0 103 chr1 196270958 196271055 -85922609 - L1PB4 LINE L1 -17 6139 6053 783 115 22 27 chr1 196271058 196271201 -85922463 - L1PB4 LINE L1 -184 5967 5815 2032 112 17 24 chr1 196271315 196271609 -85922055 - AluSg SINE Alu -18 292 1 1552 178 44 37 chr1 196271774 196272072 -85921592 - AluJo SINE Alu -1 301 2 497 217 54 76 chr1 196272324 196272485 -85921179 - MIR SINE MIR -16 246 88 2365 80 10 0 chr1 196272485 196272784 -85920880 + AluSc SINE Alu 1 302 -7 497 217 54 76 chr1 196272784 196272806 -85920858 - MIR SINE MIR -174 88 67 286 102 61 0 chr1 196273401 196273450 -85920214 - L1MA9 LINE L1 -35 6277 6226 4939 163 23 48 chr1 196273486 196273811 -85919853 - L1MA9 LINE L1 -66 6246 5914 2253 90 0 0 chr1 196273811 196274088 -85919576 + AluSg SINE Alu 2 278 -32 185 65 32 0 chr1 196274088 196274119 -85919545 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 4939 163 23 48 chr1 196274119 196274266 -85919398 - L1MA9 LINE L1 -397 5915 5766 369 0 0 0 chr1 196274266 196274307 -85919357 + (TG)n Simple_repeat Simple_repeat 2 42 0 4939 163 23 48 chr1 196274307 196275112 -85918552 - L1MA9 LINE L1 -546 5766 4992 2363 91 3 0 chr1 196275221 196275519 -85918145 - AluSp SINE Alu -14 299 1 217 292 183 44 chr1 196275813 196275950 -85917714 - L2 LINE L2 -103 3169 3014 351 0 0 0 chr1 196276285 196276324 -85917340 + (CA)n Simple_repeat Simple_repeat 2 40 0 3107 158 17 87 chr1 196276481 196277077 -85916587 - MLT2B3 LTR ERVL 0 554 1 842 128 227 0 chr1 196277571 196277712 -85915952 - AluSc SINE Alu -4 305 133 2236 113 3 0 chr1 196277713 196278014 -85915650 - AluSx SINE Alu -10 302 1 2450 183 34 32 chr1 196278050 196278517 -85915147 - Charlie1a DNA MER1_type -1540 1221 751 2095 143 0 6 chr1 196278517 196278831 -85914833 + AluJb SINE Alu 1 312 0 2450 183 34 32 chr1 196278831 196278887 -85914777 - Charlie1a DNA MER1_type -2010 751 697 1766 152 22 7 chr1 196278887 196279185 -85914479 + AluSx SINE Alu 1 302 0 8159 81 11 0 chr1 196279185 196280466 -85913198 - L1PA8 LINE L1 -632 5540 4245 4834 72 0 0 chr1 196280468 196281116 -85912548 + L1PA8 LINE L1 5539 6186 0 664 133 0 0 chr1 196281158 196281256 -85912408 - FLAM_A SINE Alu -2 140 43 2999 203 65 3 chr1 196281269 196281634 -85912030 - Charlie1a DNA MER1_type -2119 642 224 351 0 0 0 chr1 196281634 196281673 -85911991 + (CA)n Simple_repeat Simple_repeat 1 39 0 2999 203 65 3 chr1 196281673 196281912 -85911752 - Charlie1a DNA MER1_type -2537 224 1 266 250 104 21 chr1 196282296 196282392 -85911272 + MIR SINE MIR 13 116 -146 1931 155 0 7 chr1 196282565 196282856 -85910808 - AluJo SINE Alu -23 289 1 555 300 70 10 chr1 196282963 196283163 -85910501 - MIR SINE MIR -1 261 50 560 114 0 208 chr1 196283218 196283258 -85910406 - MER2 DNA MER2_type -222 123 76 653 243 0 29 chr1 196283258 196283394 -85910270 - FLAM_A SINE Alu -1 132 1 560 114 0 208 chr1 196283394 196283418 -85910246 - MER2 DNA MER2_type -269 76 49 2607 62 0 0 chr1 196283418 196283726 -85909938 - AluY SINE Alu -3 308 1 560 114 0 208 chr1 196283726 196283809 -85909855 - MER2 DNA MER2_type -296 49 6 229 214 12 119 chr1 196283892 196283976 -85909688 - MLT1L LTR MaLR -536 79 5 334 348 72 38 chr1 196284299 196284592 -85909072 + L3b LINE CR1 1108 1410 -173 674 152 0 0 chr1 196285404 196285509 -85908155 - FLAM_C SINE Alu -32 111 7 3924 162 45 23 chr1 196285532 196285957 -85907707 - L1MC1 LINE L1 -7 6326 5875 2520 54 0 7 chr1 196285957 196286255 -85907409 - AluY SINE Alu -14 297 2 3924 162 45 23 chr1 196286255 196286613 -85907051 - L1MC1 LINE L1 -458 5875 5526 23 0 0 0 chr1 196286665 196286688 -85906976 + AT_rich Low_complexity Low_complexity 1 23 0 24 96 0 0 chr1 196287493 196287566 -85906098 + AT_rich Low_complexity Low_complexity 1 73 0 2456 57 3 3 chr1 196287955 196288252 -85905412 + AluSp SINE Alu 5 301 -12 392 332 77 45 chr1 196289015 196289535 -85904129 + L2 LINE L2 2770 3312 -1 3293 126 15 26 chr1 196290740 196291094 -85902570 - Tigger1 DNA MER2_type -1049 1369 1022 2217 110 0 0 chr1 196291094 196291393 -85902271 - AluY SINE Alu -11 300 2 3293 126 15 26 chr1 196291393 196291579 -85902085 - Tigger1 DNA MER2_type -1396 1022 835 1096 119 83 21 chr1 196291582 196291775 -85901889 + MSTC LTR MaLR 4 208 -220 1076 167 0 17 chr1 196291776 196291950 -85901714 + AluJo SINE Alu 1 171 -141 279 165 0 2 chr1 196291950 196292005 -85901659 + Alu SINE Alu 249 297 -3 * 1219 149 16 88 chr1 196291999 196292112 -85901552 + MSTC LTR MaLR 198 285 -143 2360 97 0 0 chr1 196292112 196292421 -85901243 + AluSc SINE Alu 1 309 0 1219 149 16 88 chr1 196292421 196292556 -85901108 + MSTC LTR MaLR 285 428 0 3768 149 15 8 chr1 196292561 196293211 -85900453 - Tigger1 DNA MER2_type -1583 835 181 300 98 0 0 chr1 196293208 196293249 -85900415 - Tigger1 DNA MER2_type -2377 41 1 * 181 240 154 29 chr1 196293579 196293683 -85899981 + MIR SINE MIR 66 182 -80 2076 129 7 7 chr1 196294408 196294711 -85898953 - AluSx SINE Alu -9 303 1 2191 101 14 0 chr1 196295339 196295625 -85898039 + AluSx SINE Alu 1 290 -22 416 123 0 0 chr1 196295901 196295974 -85897690 - L1MA9 LINE L1 -35 6277 6205 552 280 91 5 chr1 196295979 196296165 -85897499 - MIR SINE MIR -20 242 41 2266 106 0 3 chr1 196296322 196296623 -85897041 - AluSg SINE Alu -10 300 1 410 165 12 12 chr1 196296838 196296923 -85896741 + L1MB7 LINE L1 5953 6037 -147 412 300 44 98 chr1 196297023 196297563 -85896101 - HAL1b LINE L1 -633 715 205 330 241 121 26 chr1 196297567 196297664 -85896000 + MIR SINE MIR 3 114 -148 1060 87 0 32 chr1 196297664 196297849 -85895815 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 330 241 121 26 chr1 196297849 196297867 -85895797 + MIR SINE MIR 114 129 -133 426 284 48 119 chr1 196297883 196297920 -85895744 - HAL1 LINE L1 -1206 1301 1263 1978 119 60 0 chr1 196297920 196298205 -85895459 - AluY SINE Alu -7 304 3 426 284 48 119 chr1 196298205 196298302 -85895362 - HAL1 LINE L1 -1244 1263 1161 2366 71 0 3 chr1 196298302 196298599 -85895065 - AluY SINE Alu -1 310 15 426 284 48 119 chr1 196298599 196298985 -85894679 - HAL1 LINE L1 -1346 1161 817 634 272 74 18 chr1 196299167 196299384 -85894280 - MIR SINE MIR -1 261 33 1535 101 0 5 chr1 196299693 196299901 -85893763 + AluSq SINE Alu 88 294 -19 2355 81 3 0 chr1 196300916 196301211 -85892453 + AluSp SINE Alu 1 296 -17 2077 152 0 0 chr1 196301384 196301681 -85891983 - AluSx SINE Alu -15 297 1 504 216 20 0 chr1 196302218 196302320 -85891344 - U13 snRNA snRNA 0 104 1 689 188 15 8 chr1 196303209 196303342 -85890322 - AluJo SINE Alu -176 136 3 21 0 0 0 chr1 196303347 196303368 -85890296 + AT_rich Low_complexity Low_complexity 1 21 0 1489 90 20 5 chr1 196303383 196303583 -85890081 - AluSq SINE Alu -110 203 1 7696 20 0 0 chr1 196303744 196305071 -85888593 - L1PA4 LINE L1 -2 6153 4824 9196 176 30 58 chr1 196305071 196306028 -85887636 - L1P LINE L1 -969 5177 4195 2017 135 3 35 chr1 196306028 196306340 -85887324 - AluSx SINE Alu -10 302 1 9196 176 30 58 chr1 196306340 196306725 -85886939 - L1P LINE L1 -1951 4195 3801 1888 142 117 35 chr1 196306725 196307119 -85886545 + MSTA LTR MaLR 1 426 -2 9196 176 30 58 chr1 196307119 196307937 -85885727 - L1P LINE L1 -2345 3801 3075 243 303 30 0 chr1 196309645 196309711 -85883953 - L3 LINE CR1 -31 1546 1479 224 266 83 64 chr1 196309710 196309819 -85883845 - L2 LINE L2 0 3272 3162 * 337 308 7 14 chr1 196309824 196309970 -85883694 - L1M4 LINE L1 -2631 3515 3371 2796 217 160 25 chr1 196310032 196310981 -85882683 - L1M4 LINE L1 -1560 4586 3510 1812 174 46 28 chr1 196311030 196311357 -85882307 - MER1B DNA MER1_type 0 339 7 15177 154 28 26 chr1 196311357 196314390 -85879274 + L1MA3 LINE L1 1125 4152 -3572 425 60 194 0 chr1 196314390 196314457 -85879207 + MADE1 DNA Mariner 1 80 0 15177 154 28 26 chr1 196314457 196315232 -85878432 + L1MA3 LINE L1 4152 4924 -2800 2193 102 0 0 chr1 196315232 196315507 -85878157 + AluSx SINE Alu 1 275 -37 15177 154 28 26 chr1 196315507 196317268 -85876396 + L1MA3 LINE L1 4924 6751 -973 2214 113 0 0 chr1 196317268 196317559 -85876105 + AluSq SINE Alu 5 295 -18 15177 154 28 26 chr1 196317559 196318535 -85875129 + L1MA3 LINE L1 6751 7724 0 23 33 0 0 chr1 196318543 196318573 -85875091 + AT_rich Low_complexity Low_complexity 1 30 0 525 234 0 0 chr1 196318721 196318845 -85874819 - L1MCa LINE L1 -4534 1681 1558 1357 318 81 30 chr1 196318858 196319657 -85874007 - L2 LINE L2 -462 2852 2013 328 334 71 36 chr1 196320204 196320512 -85873152 + L2 LINE L2 2994 3312 -1 25 31 0 0 chr1 196322114 196322146 -85871518 + AT_rich Low_complexity Low_complexity 1 32 0 1979 161 0 3 chr1 196322474 196322784 -85870880 + AluSx SINE Alu 1 309 -3 290 226 0 0 chr1 196323984 196324037 -85869627 - AluSx SINE Alu -12 290 238 880 206 46 11 chr1 196324040 196324215 -85869449 - AluSx SINE Alu -127 185 5 232 250 0 31 chr1 196324346 196324410 -85869254 - MLT1L LTR MaLR -419 196 135 286 295 115 55 chr1 196324514 196324897 -85868767 + L1M4 LINE L1 3809 4214 -1932 2115 139 0 7 chr1 196324944 196325077 -85868587 + AluSx SINE Alu 2 134 -178 2193 124 7 0 chr1 196325077 196325383 -85868281 + AluSg SINE Alu 1 308 -2 2115 139 0 7 chr1 196325383 196325552 -85868112 + AluSx SINE Alu 134 302 -10 463 261 171 20 chr1 196325588 196325944 -85867720 + L1M4 LINE L1 4370 4779 -1367 2047 113 21 0 chr1 196326285 196326568 -85867096 + AluSx SINE Alu 3 291 -21 427 228 83 67 chr1 196326586 196326766 -85866898 - L1ME LINE L1 -2681 3534 3352 1019 253 150 36 chr1 196326839 196327808 -85865856 - L1ME LINE L1 -4674 1541 450 858 142 0 15 chr1 196328368 196328502 -85865162 + FLAM_C SINE Alu 1 132 -1 963 247 103 52 chr1 196328643 196328973 -85864691 - L1MEc LINE L1 -3648 2567 2255 736 239 110 32 chr1 196328973 196329283 -85864381 + MER58B DNA MER1_type 4 337 -4 2185 103 0 13 chr1 196329289 196329590 -85864074 - AluSc SINE Alu -12 297 1 963 247 103 52 chr1 196329590 196330084 -85863580 - L1MEc LINE L1 -3964 2251 1704 446 251 67 14 chr1 196330083 196330306 -85863358 - L1MEc LINE L1 -5288 1108 874 * 21 0 0 0 chr1 196330405 196330426 -85863238 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr1 196330589 196330653 -85863011 + AT_rich Low_complexity Low_complexity 1 64 0 663 219 126 52 chr1 196331492 196331762 -85861902 - LTR34 LTR ERV1 -4 695 406 2782 19 0 0 chr1 196331763 196332079 -85861585 - L1PA4 LINE L1 -408 5747 5432 3553 28 2 0 chr1 196332079 196332498 -85861166 + L1PA4 LINE L1 5731 6153 -2 522 260 126 19 chr1 196332505 196332774 -85860890 - LTR34 LTR ERV1 -298 401 104 338 246 53 18 chr1 196332791 196332905 -85860759 - MER4A LTR ERV1 -546 118 1 2489 127 23 50 chr1 196333617 196334057 -85859607 - MSTA LTR MaLR 0 428 1 1745 128 95 7 chr1 196334315 196334589 -85859075 + AluSx SINE Alu 1 298 -14 2201 55 80 0 chr1 196334591 196334865 -85858799 + AluY SINE Alu 1 296 -15 1190 179 88 12 chr1 196335007 196335247 -85858417 - MLT1A1 LTR MaLR -2 363 106 201 256 0 0 chr1 196335247 196335290 -85858374 + CT-rich Low_complexity Low_complexity 2 44 0 42854 32 21 1 chr1 196335356 196341383 -85852281 - L1PA2 LINE L1 -2 6153 2 696 316 117 34 chr1 196341415 196341852 -85851812 + L2 LINE L2 2841 3313 0 1936 157 3 3 chr1 196342325 196342637 -85851027 - AluSq SINE Alu -1 312 1 279 54 0 0 chr1 196343012 196343049 -85850615 + (TG)n Simple_repeat Simple_repeat 2 38 0 1882 135 7 0 chr1 196343128 196343432 -85850232 + AluSq SINE Alu 1 306 0 194 239 0 0 chr1 196344968 196345014 -85848650 + L2 LINE L2 3264 3309 -4 24 32 0 0 chr1 196345593 196345624 -85848040 + AT_rich Low_complexity Low_complexity 1 31 0 252 153 278 14 chr1 196345665 196345737 -85847927 - MIR SINE MIR -3 259 169 478 238 24 0 chr1 196345763 196345889 -85847775 - MER94 DNA DNA -4 130 2 24 0 0 0 chr1 196346358 196346382 -85847282 + AT_rich Low_complexity Low_complexity 1 24 0 2102 133 3 0 chr1 196347166 196347459 -85846205 - AluSq SINE Alu -17 296 3 2257 111 7 0 chr1 196347728 196348025 -85845639 - AluSx SINE Alu -13 299 1 302 186 265 10 chr1 196348181 196348283 -85845381 - L1ME4a LINE L1 -20 6101 5974 1777 183 20 20 chr1 196348535 196348879 -85844785 - MER2 DNA MER2_type 0 344 1 442 155 0 14 chr1 196349420 196349491 -85844173 + HUERS-P3b LTR ERV1 7342 7411 -7 3284 139 39 6 chr1 196349492 196350032 -85843632 + LTR9B LTR ERV1 1 558 -86 726 281 70 31 chr1 196350049 196350305 -85843359 - Tigger8 DNA MER2_type -47 619 354 373 281 0 0 chr1 196350359 196350441 -85843223 + L2 LINE L2 3232 3313 0 392 263 81 27 chr1 196350444 196350630 -85843034 - Tigger8 DNA MER2_type -317 349 154 237 224 0 0 chr1 196351193 196351251 -85842413 + (TA)n Simple_repeat Simple_repeat 1 58 0 2205 107 10 7 chr1 196351724 196352032 -85841632 - AluSg SINE Alu -1 309 1 2100 114 0 26 chr1 196352880 196353188 -85840476 - AluSq SINE Alu -11 302 3 312 228 190 6 chr1 196353199 196353357 -85840307 - L1ME4a LINE L1 0 6121 5935 2141 128 7 0 chr1 196353987 196354284 -85839380 - AluSx SINE Alu -13 299 1 22 0 0 0 chr1 196355041 196355063 -85838601 + AT_rich Low_complexity Low_complexity 1 22 0 378 286 176 30 chr1 196355202 196355538 -85838126 + L1MC4 LINE L1 5255 5639 -2169 449 180 108 18 chr1 196355680 196355791 -85837873 + L1MC4 LINE L1 6885 7005 -1037 345 235 12 0 chr1 196356337 196356422 -85837242 + HsTC2 DNA Tc2 1 86 -1812 6445 61 1 0 chr1 196356427 196357233 -85836431 - L1PA8 LINE L1 -17 6155 5349 319 179 84 21 chr1 196357233 196357328 -85836336 + HsTC2 DNA Tc2 1793 1893 -5 2210 227 56 116 chr1 196357452 196357616 -85836048 - L1MC4 LINE L1 0 8042 7870 2023 144 0 3 chr1 196357616 196357915 -85835749 - AluSx SINE Alu -14 298 1 2210 227 56 116 chr1 196357915 196358591 -85835073 - L1MC4 LINE L1 -172 7870 7296 2193 83 0 0 chr1 196358591 196358894 -85834770 + AluSc SINE Alu 2 304 0 2210 227 56 116 chr1 196358894 196359283 -85834381 - L1MC4 LINE L1 -746 7296 6885 339 123 148 0 chr1 196359893 196359974 -85833690 - L1MA8 LINE L1 0 6291 6199 1468 179 0 58 chr1 196360384 196360692 -85832972 - AluJo SINE Alu -22 290 1 38 51 0 0 chr1 196360794 196360853 -85832811 + AT_rich Low_complexity Low_complexity 1 59 0 1837 150 0 35 chr1 196360865 196361178 -85832486 - AluJo SINE Alu -10 302 1 223 302 0 0 chr1 196361319 196361372 -85832292 + L2 LINE L2 3185 3237 -35 437 210 226 23 chr1 196361397 196361577 -85832087 - MIR SINE MIR -15 247 35 615 239 162 59 chr1 196361834 196361927 -85831737 - MIR SINE MIR 0 262 180 2382 95 0 0 chr1 196361927 196362222 -85831442 - AluSg SINE Alu -15 295 1 615 239 162 59 chr1 196362222 196362350 -85831314 - MIR SINE MIR -82 180 18 695 228 21 6 chr1 196364536 196364707 -85828957 - L1MD2 LINE L1 -4 7781 6180 441 274 136 81 chr1 196364842 196365571 -85828093 + LTR41 LTR ERVL 5 773 0 283 310 58 0 chr1 196366387 196366474 -85827190 + L2 LINE L2 1513 1604 -1710 738 261 119 45 chr1 196366475 196366828 -85826836 + L2 LINE L2 2153 2531 -783 268 235 0 49 chr1 196366865 196366967 -85826697 + A-rich Low_complexity Low_complexity 3 99 0 22 35 0 0 chr1 196367450 196367479 -85826185 + AT_rich Low_complexity Low_complexity 1 29 0 625 168 26 0 chr1 196367539 196367652 -85826012 + AluSg/x SINE Alu 186 301 -11 213 108 0 0 chr1 196368040 196368077 -85825587 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 555 255 143 0 chr1 196368211 196368372 -85825292 + MIR SINE MIR 48 231 -31 6142 179 95 33 chr1 196368547 196370051 -85823613 + Tigger6b DNA MER2_type 1 1597 0 2355 75 0 13 chr1 196370285 196370592 -85823072 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 196370946 196370969 -85822695 + AT_rich Low_complexity Low_complexity 1 23 0 2184 78 0 53 chr1 196371007 196371328 -85822336 - AluY SINE Alu -2 309 6 271 254 272 35 chr1 196371533 196371706 -85821958 + MIR SINE MIR 49 262 0 197 321 18 0 chr1 196371869 196371925 -85821739 + L2 LINE L2 3114 3170 -102 258 330 39 0 chr1 196372183 196372286 -85821378 - MIR3 SINE MIR -38 170 64 846 206 0 32 chr1 196372505 196372694 -85820970 + L1PB4 LINE L1 5972 6154 -2 388 296 45 30 chr1 196373633 196373765 -85819899 + MIR SINE MIR 28 161 -101 180 395 64 18 chr1 196375400 196375509 -85818155 - L2 LINE L2 -25 3247 3134 519 318 71 9 chr1 196376094 196376305 -85817359 - L3 LINE CR1 -98 1479 1256 1165 211 127 0 chr1 196376387 196376695 -85816969 + MER7A DNA MER2_type 1 345 -1 297 0 0 0 chr1 196376696 196376729 -85816935 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 289 0 0 chr1 196377234 196377279 -85816385 + polypurine Low_complexity Low_complexity 3 47 0 21 89 0 0 chr1 196377441 196377497 -85816167 + AT_rich Low_complexity Low_complexity 1 56 0 1362 201 32 39 chr1 196378250 196378534 -85815130 - AluJo SINE Alu -30 282 1 24 67 0 0 chr1 196378655 196378700 -85814964 + AT_rich Low_complexity Low_complexity 1 45 0 206 167 21 0 chr1 196379585 196379633 -85814031 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 28 0 0 0 chr1 196380120 196380148 -85813516 + AT_rich Low_complexity Low_complexity 1 28 0 2002 108 31 10 chr1 196380210 196380498 -85813166 + AluSq SINE Alu 1 294 -19 25 0 0 0 chr1 196381323 196381348 -85812316 + AT_rich Low_complexity Low_complexity 1 25 0 396 0 0 0 chr1 196382138 196382182 -85811482 + (GA)n Simple_repeat Simple_repeat 1 44 0 5809 67 66 0 chr1 196382864 196383639 -85810025 - LTR12 LTR ERV1 0 826 1 378 248 102 7 chr1 196383802 196383816 -85809848 - L1MA10 LINE L1 -1 6333 6320 2425 219 124 23 chr1 196383816 196385210 -85808454 - L1ME1 LINE L1 -5 6161 4909 1857 162 0 13 chr1 196385210 196385524 -85808140 + AluJb SINE Alu 1 310 -2 2425 219 124 23 chr1 196385524 196385587 -85808077 - L1ME1 LINE L1 -1257 4909 4854 187 71 0 0 chr1 196385587 196385615 -85808049 + (TTTG)n Simple_repeat Simple_repeat 1 96 0 2061 115 4 0 chr1 196385615 196385893 -85807771 - AluSq SINE Alu -1 309 4 2425 219 124 23 chr1 196385893 196386063 -85807601 - L1ME1 LINE L1 -1311 4855 4398 3744 149 90 8 chr1 196386072 196386829 -85806835 - L1MA9 LINE L1 -18 6498 5680 327 119 0 0 chr1 196386832 196386891 -85806773 - FLAM_A SINE Alu 0 133 75 10213 226 91 25 chr1 196386891 196387104 -85806560 - L1MA9 LINE L1 -1443 4907 4709 2259 106 0 0 chr1 196387104 196387406 -85806258 - AluSq SINE Alu -11 302 1 10213 226 91 25 chr1 196387406 196389583 -85804081 - L1MA9 LINE L1 -1641 4709 2676 1893 167 0 10 chr1 196389583 196389882 -85803782 - AluSx SINE Alu -16 296 1 10213 226 91 25 chr1 196389882 196391149 -85802515 - L1MA9 LINE L1 -3674 2676 1493 1562 195 3 18 chr1 196391149 196391431 -85802233 - AluJo SINE Alu -34 278 1 10213 226 91 25 chr1 196391431 196392700 -85800964 - L1MA9 LINE L1 -4857 1493 1 408 254 156 0 chr1 196392713 196392839 -85800825 - L1ME1 LINE L1 -1742 4404 4299 1885 161 7 3 chr1 196392839 196393149 -85800515 - AluJo SINE Alu -1 311 1 408 254 156 0 chr1 196393149 196393246 -85800418 - L1ME1 LINE L1 -1847 4299 4146 2801 228 72 49 chr1 196393269 196394109 -85799555 - L1ME1 LINE L1 -2200 3946 3127 342 0 0 0 chr1 196394109 196394147 -85799517 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1573 171 46 0 chr1 196394147 196394410 -85799254 - AluJo SINE Alu -32 280 6 2801 228 72 49 chr1 196394410 196394855 -85798809 - L1ME1 LINE L1 -3018 3128 2630 454 255 26 39 chr1 196394941 196395094 -85798570 - MIR SINE MIR -7 255 105 219 290 0 32 chr1 196395845 196395907 -85797757 - L2 LINE L2 -9 3263 3204 480 270 142 34 chr1 196396077 196396281 -85797383 + MIR SINE MIR 37 262 0 865 309 129 44 chr1 196396577 196397010 -85796654 - L2 LINE L2 -495 2819 2424 2115 119 0 3 chr1 196397010 196397304 -85796360 - AluSc SINE Alu -14 295 3 1647 175 10 10 chr1 196397306 196397469 -85796195 - AluJo SINE Alu -13 299 134 2101 118 3 10 chr1 196397469 196397773 -85795891 - AluSg SINE Alu -8 302 1 1647 175 10 10 chr1 196397773 196397900 -85795764 - AluJo SINE Alu -177 135 9 865 309 129 44 chr1 196397900 196398372 -85795292 - L2 LINE L2 -890 2424 1834 198 71 0 0 chr1 196399036 196399064 -85794600 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 411 161 91 9 chr1 196399202 196399317 -85794347 - MER39 LTR ERV1 0 666 411 1577 153 88 16 chr1 196399317 196399637 -85794027 - MER61A LTR ERV1 0 343 1 17397 90 41 11 chr1 196399637 196402333 -85791331 - MER61A-int LTR ERV1 0 5217 2390 2221 102 3 13 chr1 196402333 196402638 -85791026 + AluSp SINE Alu 1 302 -11 17397 90 41 11 chr1 196402638 196402720 -85790944 - MER61A-int LTR ERV1 -2827 2390 2312 270 163 0 0 chr1 196402721 196402764 -85790900 + Alu SINE Alu 2 44 -258 1354 125 0 5 chr1 196402764 196402956 -85790708 + AluSg/x SINE Alu 90 280 -29 219 36 0 0 chr1 196402956 196402984 -85790680 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3849 198 81 59 chr1 196403020 196404125 -85789539 - LTR28 LTR ERV1 0 1755 1 194 372 77 0 chr1 196404125 196404203 -85789461 - L2 LINE L2 -325 2988 2905 218 299 23 46 chr1 196405322 196405409 -85788255 - MER5B DNA MER1_type 0 178 94 1413 250 46 25 chr1 196405950 196406382 -85787282 - L1M4 LINE L1 -1922 4224 3784 201 186 10 69 chr1 196406384 196406486 -85787178 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 22 0 0 0 chr1 196406502 196406524 -85787140 + AT_rich Low_complexity Low_complexity 1 22 0 204 196 18 18 chr1 196406542 196406598 -85787066 + (TA)n Simple_repeat Simple_repeat 2 57 0 247 243 0 12 chr1 196406667 196406741 -85786923 + L1ME1 LINE L1 6057 6127 -37 2009 124 13 10 chr1 196407474 196407772 -85785892 - AluSx SINE Alu -10 302 4 22 0 0 0 chr1 196407777 196407799 -85785865 + AT_rich Low_complexity Low_complexity 1 22 0 6640 36 9 0 chr1 196407865 196408664 -85785000 - L1PA5 LINE L1 -8 6146 5341 843 297 54 0 chr1 196409090 196409329 -85784335 - MIR SINE MIR -5 257 6 9899 181 27 25 chr1 196409372 196412303 -85781361 - L1MB5 LINE L1 -1 7592 4718 2060 225 49 2 chr1 196412294 196412788 -85780876 - L1MB5 LINE L1 -3250 4315 3799 * 9727 185 91 82 chr1 196412800 196413172 -85780492 - L1MA1 LINE L1 0 7721 7354 2021 153 38 16 chr1 196413172 196413539 -85780125 - THE1C LTR MaLR 0 375 1 9727 185 91 82 chr1 196413539 196413696 -85779968 - L1MA1 LINE L1 -367 7354 7200 2236 107 3 3 chr1 196413696 196413996 -85779668 - AluSq SINE Alu -13 300 1 9727 185 91 82 chr1 196413996 196415127 -85778537 - L1MA1 LINE L1 -521 7200 6081 1440 74 16 16 chr1 196415127 196415316 -85778348 - AluY SINE Alu -122 189 1 9727 185 91 82 chr1 196415316 196417711 -85775953 - L1MA1 LINE L1 -1640 6081 3418 244 163 0 0 chr1 196417712 196417761 -85775903 - Alu SINE Alu -5 297 249 13505 170 68 10 chr1 196417761 196420327 -85773337 - L1MA1 LINE L1 -4839 2726 12 1529 232 53 72 chr1 196420325 196420541 -85773123 - L1MB5 LINE L1 -3753 3812 3593 * 216 0 0 0 chr1 196420541 196420565 -85773099 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1529 232 53 72 chr1 196420565 196420670 -85772994 - L1MB5 LINE L1 -3972 3593 3488 536 15 29 0 chr1 196420670 196420738 -85772926 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 1529 232 53 72 chr1 196420738 196421306 -85772358 - L1MB5 LINE L1 -4077 3488 2938 * 2020 233 40 27 chr1 196421289 196421945 -85771719 - L1M4 LINE L1 -1651 4495 3832 1827 242 74 7 chr1 196422176 196422610 -85771054 - L1ME1 LINE L1 -7 6159 5756 6205 132 21 28 chr1 196422610 196423688 -85769976 + MER11C LTR ERVK 1 1071 0 1827 242 74 7 chr1 196423688 196424371 -85769293 - L1ME1 LINE L1 -410 5756 4942 1397 266 41 24 chr1 196424371 196424788 -85768876 - MLT1F LTR MaLR -46 496 73 265 320 0 0 chr1 196424936 196425014 -85768650 - MLT1J1 LTR MaLR -354 92 15 225 393 93 13 chr1 196425314 196425464 -85768200 - MIR SINE MIR -81 181 20 618 339 88 41 chr1 196426331 196427112 -85766552 - L2 LINE L2 -748 2566 1749 186 256 0 0 chr1 196427258 196427297 -85766367 + L2 LINE L2 2924 2962 -310 13624 219 50 38 chr1 196427443 196430046 -85763618 + L1MA6 LINE L1 7 2577 -4655 537 58 0 0 chr1 196430046 196430115 -85763549 + (TA)n Simple_repeat Simple_repeat 2 70 0 13624 219 50 38 chr1 196430115 196430577 -85763087 + L1MA6 LINE L1 2577 3032 -4200 2133 131 0 0 chr1 196430577 196430867 -85762797 + AluSx SINE Alu 1 290 -22 13624 219 50 38 chr1 196430867 196432001 -85761663 + L1MA6 LINE L1 3032 4151 -3081 283 128 0 0 chr1 196432001 196432040 -85761624 + LTR8 LTR ERV1 549 587 -104 13624 219 50 38 chr1 196432040 196432387 -85761277 + L1MA6 LINE L1 4151 4492 -2740 1561 199 0 18 chr1 196432387 196432698 -85760966 + AluJo SINE Alu 1 306 0 13624 219 50 38 chr1 196432698 196433754 -85759910 + L1MA6 LINE L1 4492 6489 -743 295 93 93 0 chr1 196433754 196433769 -85759895 - Alu SINE Alu -6 294 282 2318 42 3 0 chr1 196433769 196434057 -85759607 - L1PA4 LINE L1 -3 6152 5864 295 93 93 0 chr1 196434057 196434095 -85759569 - Alu SINE Alu -18 282 236 2060 120 3 0 chr1 196434470 196434785 -85758879 - AluSx SINE Alu 0 316 1 4391 140 31 12 chr1 196434785 196435556 -85758108 + L1MA6 LINE L1 6473 7258 -2 292 261 11 0 chr1 196435650 196435738 -85757926 + L1M4b LINE L1 91 179 -6680 331 305 122 30 chr1 196435999 196436196 -85757468 + L1M4b LINE L1 830 1044 -5811 1177 259 53 49 chr1 196436394 196436840 -85756824 + L2 LINE L2 2607 3051 -262 189 323 48 0 chr1 196437911 196437973 -85755691 - L2 LINE L2 -1 3271 3207 1726 168 0 40 chr1 196438211 196438514 -85755150 - AluJo SINE Alu -21 291 1 346 283 224 7 chr1 196438625 196438777 -85754887 - MER5A DNA MER1_type -1 188 4 434 173 0 0 chr1 196438792 196438873 -85754791 - MIR SINE MIR -58 204 124 288 0 0 0 chr1 196438943 196438975 -85754689 + (TG)n Simple_repeat Simple_repeat 1 32 0 201 74 0 0 chr1 196438975 196439002 -85754662 + (GA)n Simple_repeat Simple_repeat 2 28 0 1060 204 29 12 chr1 196439136 196439381 -85754283 - MLT1E1 LTR MaLR 0 654 406 219 307 55 71 chr1 196439519 196439646 -85754018 - L2 LINE L2 -473 2841 2717 33 0 0 0 chr1 196439898 196439931 -85753733 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr1 196440748 196440780 -85752884 + AT_rich Low_complexity Low_complexity 1 32 0 270 219 0 0 chr1 196440924 196440988 -85752676 + MER58 DNA MER1_type 56 119 -96 274 189 19 0 chr1 196440996 196441049 -85752615 + MER58 DNA MER1_type 2365 2418 -2 2294 107 0 0 chr1 196441702 196441992 -85751672 - AluSx SINE Alu -18 294 5 5375 93 67 0 chr1 196442399 196443267 -85750397 - L1PA11 LINE L1 -2 6172 5233 23 0 0 0 chr1 196443442 196443465 -85750199 + AT_rich Low_complexity Low_complexity 1 23 0 2263 107 3 0 chr1 196444830 196445128 -85748536 - AluSx SINE Alu -13 299 1 346 277 188 30 chr1 196445175 196445643 -85748021 - L1ME4a LINE L1 -212 5909 5372 193 328 15 0 chr1 196446351 196446418 -85747246 - MIR SINE MIR 0 262 195 12418 181 39 11 chr1 196446863 196449561 -85744103 - L1 LINE L1 -978 6587 3964 261 0 0 0 chr1 196449561 196449590 -85744074 + (TG)n Simple_repeat Simple_repeat 2 30 0 2158 82 0 7 chr1 196449590 196449871 -85743793 - AluY SINE Alu -20 291 13 12418 181 39 11 chr1 196449871 196450360 -85743304 - L1 LINE L1 -3601 3964 3301 612 76 0 0 chr1 196450360 196450439 -85743225 + MADE1 DNA Mariner 1 79 -1 12418 181 39 11 chr1 196450439 196450508 -85743156 - L1 LINE L1 -4264 3301 3235 6065 65 34 46 chr1 196450508 196451810 -85741854 - SVA Other Other -520 1386 433 5410 66 28 56 chr1 196451838 196453159 -85740505 - SVA Other Other -518 868 57 306 0 0 0 chr1 196453159 196453193 -85740471 + (AGGGGG)n Simple_repeat Simple_repeat 2 35 0 8842 162 32 46 chr1 196453193 196453875 -85739789 - L1 LINE L1 -4337 3228 2538 2231 73 0 24 chr1 196453875 196454197 -85739467 - AluY SINE Alu 0 315 1 8842 162 32 46 chr1 196454197 196455951 -85737713 - L1 LINE L1 -5027 2538 166 49 18 0 0 chr1 196456328 196456384 -85737280 + AT_rich Low_complexity Low_complexity 1 56 0 3026 34 0 0 chr1 196456679 196457065 -85736599 - L1P LINE L1 -922 5224 4839 5512 31 0 1 chr1 196457065 196457714 -85735950 + L1PA4 LINE L1 5505 6152 -3 282 326 98 0 chr1 196458933 196459065 -85734599 - MIR SINE MIR 0 262 118 918 284 17 8 chr1 196459948 196460184 -85733480 - MIR SINE MIR -1 261 24 3163 145 17 26 chr1 196460198 196460772 -85732892 - MER101B LTR ERV1 -1 569 1 336 349 163 24 chr1 196460894 196461146 -85732518 - L2 LINE L2 -1 3271 2985 853 225 35 10 chr1 196461786 196461986 -85731678 + MIR SINE MIR 29 233 -29 25 31 0 0 chr1 196462927 196462959 -85730705 + AT_rich Low_complexity Low_complexity 1 32 0 1969 88 0 4 chr1 196462964 196463213 -85730451 + AluY SINE Alu 1 248 -63 6857 177 15 34 chr1 196463214 196463878 -85729786 - L1 LINE L1 -1341 4805 4130 6375 81 16 16 chr1 196463878 196465613 -85728051 - L1PA13 LINE L1 -12 6151 4412 6857 177 15 34 chr1 196465613 196466333 -85727331 - L1 LINE L1 -2016 4130 3451 2889 3 0 0 chr1 196466333 196466643 -85727021 - AluYa5 SINE Alu -1 310 1 6857 177 15 34 chr1 196466643 196466817 -85726847 - L1 LINE L1 -2695 3451 3275 2624 266 154 23 chr1 196466818 196468021 -85725643 - L1M1 LINE L1 -5872 1693 19 2302 100 0 28 chr1 196468577 196468897 -85724767 + AluSx SINE Alu 1 311 -1 318 272 82 67 chr1 196470254 196470449 -85723215 - L1MC/D LINE L1 -1971 5837 5640 372 248 144 70 chr1 196470485 196470755 -85722909 - L1MC/D LINE L1 -552 5569 5280 1874 157 24 3 chr1 196471286 196471573 -85722091 - AluJb SINE Alu -19 293 1 21 0 0 0 chr1 196471619 196471640 -85722024 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr1 196472553 196472577 -85721087 + (T)n Simple_repeat Simple_repeat 1 24 0 34 72 0 0 chr1 196473257 196473326 -85720338 + AT_rich Low_complexity Low_complexity 1 69 0 25 75 0 0 chr1 196473678 196473731 -85719933 + AT_rich Low_complexity Low_complexity 1 53 0 240 136 0 0 chr1 196474202 196474246 -85719418 - LTR37B LTR ERV1 -49 419 376 1132 244 54 56 chr1 196474247 196474748 -85718916 - LTR24B LTR ERV1 -7 569 70 268 169 56 56 chr1 196474929 196475018 -85718646 - LTR37A LTR ERV1 -259 167 79 329 321 64 18 chr1 196475340 196475558 -85718106 - LTR33A LTR ERVL -4 519 292 374 255 44 39 chr1 196475819 196475997 -85717667 - LTR50 LTR ERVL -364 159 7 934 258 92 24 chr1 196477379 196477871 -85715793 + L1ME1 LINE L1 3052 3576 -2570 1871 157 7 11 chr1 196477872 196478153 -85715511 + AluSx SINE Alu 1 280 -32 219 69 0 0 chr1 196478155 196478184 -85715480 + (TAAAG)n Simple_repeat Simple_repeat 1 29 0 664 151 24 24 chr1 196478186 196478352 -85715312 + GA-rich Low_complexity Low_complexity 2 167 0 3890 230 37 38 chr1 196478354 196479635 -85714029 + L1ME1 LINE L1 3562 4840 -1306 1078 147 5 0 chr1 196479635 196479826 -85713838 + L1ME1 LINE L1 5333 5524 -660 25 31 0 0 chr1 196479849 196479881 -85713783 + AT_rich Low_complexity Low_complexity 1 32 0 41075 32 21 1 chr1 196479881 196485905 -85707759 - L1PA2 LINE L1 -7 6148 2 2070 225 71 24 chr1 196485905 196486526 -85707138 + L1ME1 LINE L1 5512 6161 -5 201 147 0 0 chr1 196486598 196486632 -85707032 + (A)n Simple_repeat Simple_repeat 1 34 0 239 333 0 0 chr1 196486823 196486898 -85706766 + L2 LINE L2 3235 3309 -4 2973 268 123 19 chr1 196487122 196488260 -85705404 - L2 LINE L2 -589 2725 1469 733 246 48 11 chr1 196488258 196488445 -85705219 - MIR SINE MIR -2 260 67 * 187 138 0 0 chr1 196488449 196488478 -85705186 - MIR SINE MIR -156 106 78 312 286 26 13 chr1 196488479 196488556 -85705108 - MIR SINE MIR -156 106 29 240 59 0 0 chr1 196488564 196488598 -85705066 + (TG)n Simple_repeat Simple_repeat 2 35 0 2227 84 10 3 chr1 196488598 196488895 -85704769 - AluSq SINE Alu -14 299 1 250 267 112 52 chr1 196488916 196489032 -85704632 - L2 LINE L2 -2003 1311 1189 180 0 0 0 chr1 196489315 196489335 -85704329 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 26 30 0 0 chr1 196489839 196489872 -85703792 + AT_rich Low_complexity Low_complexity 1 33 0 208 338 32 64 chr1 196491570 196491727 -85701937 + L3b LINE CR1 1432 1583 0 439 271 34 17 chr1 196491786 196491904 -85701760 - L2 LINE L2 0 3313 3194 25 75 0 0 chr1 196492547 196492600 -85701064 + AT_rich Low_complexity Low_complexity 1 53 0 400 292 208 22 chr1 196492664 196492976 -85700688 - L2 LINE L2 -620 2694 2325 1255 173 37 83 chr1 196493431 196493731 -85699933 - AluJo SINE Alu -26 286 1 21 0 0 0 chr1 196493755 196493776 -85699888 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr1 196496824 196496864 -85696800 + AT_rich Low_complexity Low_complexity 1 40 0 29 28 0 0 chr1 196497039 196497075 -85696589 + AT_rich Low_complexity Low_complexity 1 36 0 994 268 58 19 chr1 196497090 196497452 -85696212 + Charlie7 DNA MER1_type 35 410 -2202 751 247 89 23 chr1 196497486 196497790 -85695874 + Charlie7 DNA MER1_type 1726 2049 -563 720 206 148 0 chr1 196497797 196497952 -85695712 + FAM SINE Alu 1 46 -3 501 243 248 0 chr1 196497957 196498171 -85695493 + Charlie7 DNA MER1_type 2060 2326 -286 1280 183 8 8 chr1 196498172 196498413 -85695251 + L1MB7 LINE L1 5910 6150 -34 345 247 152 6 chr1 196498455 196498633 -85695031 + Charlie7 DNA MER1_type 2392 2595 -17 1615 178 0 26 chr1 196498946 196499249 -85694415 + AluJo SINE Alu 1 295 -17 775 240 28 132 chr1 196499817 196500387 -85693277 - MER77 LTR ERV1 -9 596 214 387 313 20 20 chr1 196500532 196500679 -85692985 - MER77 LTR ERV1 -408 197 51 2290 109 33 11 chr1 196501673 196502040 -85691624 - THE1C LTR MaLR 0 375 1 294 369 8 33 chr1 196502441 196502563 -85691101 + L2 LINE L2 3134 3252 -20 853 250 39 10 chr1 196503297 196503505 -85690159 + MIR SINE MIR 30 243 -19 317 346 197 12 chr1 196503724 196504059 -85689605 - L2 LINE L2 0 3272 2876 214 372 33 16 chr1 196504072 196504193 -85689471 + L2 LINE L2 3191 3313 0 182 263 162 30 chr1 196504197 196504296 -85689368 - MIR SINE MIR -30 232 121 384 77 0 0 chr1 196505298 196505350 -85688314 + (TG)n Simple_repeat Simple_repeat 2 53 0 604 143 20 0 chr1 196505360 196505458 -85688206 - FAM SINE Alu -2 183 84 483 278 139 0 chr1 196505499 196505672 -85687992 + MIR SINE MIR 47 243 -19 359 343 70 67 chr1 196506094 196506394 -85687270 - L2 LINE L2 0 3272 2972 216 264 57 0 chr1 196506703 196506756 -85686908 - L2 LINE L2 -3 3310 3255 27 29 0 0 chr1 196506756 196506790 -85686874 + AT_rich Low_complexity Low_complexity 1 34 0 2172 131 0 0 chr1 196507785 196508097 -85685567 + AluJb SINE Alu 1 312 0 1082 175 152 0 chr1 196508745 196508956 -85684708 + AluJo SINE Alu 3 245 -67 267 89 89 0 chr1 196508956 196509001 -85684663 + MADE1 DNA Mariner 31 79 -1 203 261 0 15 chr1 196509368 196509433 -85684231 + T-rich Low_complexity Low_complexity 2 65 0 787 212 12 30 chr1 196509468 196509633 -85684031 - Tigger2 DNA MER2_type -11 2707 2546 * 2597 169 48 36 chr1 196509629 196510151 -85683513 - Tigger2 DNA MER2_type -1862 856 329 5077 138 19 6 chr1 196510151 196511216 -85682448 - L1PA16 LINE L1 0 6166 5089 4793 53 20 31 chr1 196511220 196512365 -85681299 + MER11A LTR ERVK 1 1266 0 10152 181 38 16 chr1 196512370 196516086 -85677578 - L1PA15-16 LINE L1 -1061 5788 1283 1720 156 34 12 chr1 196516086 196516406 -85677258 - Tigger2 DNA MER2_type -2391 327 1 203 156 0 0 chr1 196518103 196518135 -85675529 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr1 196518538 196518561 -85675103 + AT_rich Low_complexity Low_complexity 1 23 0 448 36 0 0 chr1 196519152 196519207 -85674457 + MADE1 DNA Mariner 25 79 -1 2121 124 3 0 chr1 196520848 196521139 -85672525 + AluSx SINE Alu 3 294 -18 461 262 221 20 chr1 196521305 196521454 -85672210 - MER5A DNA MER1_type -7 182 4 23 0 0 0 chr1 196522289 196522312 -85671352 + AT_rich Low_complexity Low_complexity 1 23 0 2447 60 0 3 chr1 196522762 196523064 -85670600 - AluY SINE Alu -10 301 1 322 154 0 46 chr1 196523064 196523129 -85670535 - MER69 DNA AcHobo -7 2519 2458 294 254 0 0 chr1 196523147 196523206 -85670458 - MER69 DNA AcHobo -1094 132 74 231 335 66 82 chr1 196523334 196523516 -85670148 + L2 LINE L2 2537 2715 -599 768 272 44 26 chr1 196523556 196523828 -85669836 - L1MEc LINE L1 -4600 1796 1520 2212 123 0 0 chr1 196523848 196524158 -85669506 - AluSx SINE Alu -2 310 1 719 269 7 0 chr1 196524182 196524331 -85669333 + MER45A DNA AcHobo 1 150 -28 22 0 0 0 chr1 196524515 196524537 -85669127 + AT_rich Low_complexity Low_complexity 1 22 0 289 245 9 47 chr1 196524582 196524688 -85668976 - MIR SINE MIR -56 206 105 2140 112 27 0 chr1 196524761 196525057 -85668607 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr1 196525714 196525735 -85667929 + AT_rich Low_complexity Low_complexity 1 21 0 205 310 0 0 chr1 196525773 196525831 -85667833 + CT-rich Low_complexity Low_complexity 3 60 0 360 0 0 0 chr1 196529234 196529274 -85664390 + (TG)n Simple_repeat Simple_repeat 1 40 0 369 205 142 39 chr1 196529895 196530022 -85663642 - L2 LINE L2 -4 3309 3170 278 261 76 42 chr1 196530292 196530411 -85663253 - L2 LINE L2 -2 3270 3148 2229 97 3 3 chr1 196531549 196531857 -85661807 + AluSg SINE Alu 1 308 -2 1577 141 100 0 chr1 196532192 196532462 -85661202 + AluJb SINE Alu 1 297 -15 2225 156 28 0 chr1 196534054 196534445 -85659219 - L1PA16 LINE L1 -9 6157 5756 2212 120 0 0 chr1 196534616 196534925 -85658739 - AluSc SINE Alu 0 309 1 595 303 71 9 chr1 196535129 196535340 -85658324 - MIR SINE MIR -38 224 1 3044 201 56 65 chr1 196536032 196536192 -85657472 - L1ME2 LINE L1 -37 6127 5967 429 20 0 0 chr1 196536192 196536242 -85657422 + (CA)n Simple_repeat Simple_repeat 2 51 0 3044 201 56 65 chr1 196536242 196537121 -85656543 - L1ME2 LINE L1 -197 5967 5106 1620 173 14 7 chr1 196537121 196537404 -85656260 - AluJo SINE Alu -24 288 4 3044 201 56 65 chr1 196537404 196537725 -85655939 - L1ME2 LINE L1 -1058 5106 4783 7480 33 3 0 chr1 196537744 196538834 -85654830 - L1PA4 LINE L1 0 6155 5064 11527 45 0 1 chr1 196538834 196540264 -85653400 + L1P LINE L1 664 2092 -4054 1714 231 104 50 chr1 196540263 196540526 -85653138 - L1ME2 LINE L1 -1381 4765 4517 * 2154 98 10 10 chr1 196540526 196540823 -85652841 + AluSx SINE Alu 1 297 -15 1714 231 104 50 chr1 196540823 196540834 -85652830 - L1ME2 LINE L1 -1629 4517 4508 297 0 0 0 chr1 196540834 196540867 -85652797 + (TA)n Simple_repeat Simple_repeat 1 33 0 1714 231 104 50 chr1 196540867 196541344 -85652320 - L1ME2 LINE L1 -1638 4508 3973 419 303 31 49 chr1 196541874 196542036 -85651628 - L2 LINE L2 -9 3304 3146 202 319 0 0 chr1 196542066 196542113 -85651551 - L2 LINE L2 -259 3054 3008 499 362 41 18 chr1 196542331 196542549 -85651115 - L2 LINE L2 -540 2774 2552 1792 114 76 14 chr1 196542655 196542945 -85650719 - AluSx SINE Alu -2 310 3 41 82 0 0 chr1 196543101 196543198 -85650466 + AT_rich Low_complexity Low_complexity 1 97 0 2070 124 3 0 chr1 196543542 196543867 -85649797 + AluSq SINE Alu 1 326 0 34 24 0 0 chr1 196544286 196544327 -85649337 + AT_rich Low_complexity Low_complexity 1 41 0 236 86 0 0 chr1 196544642 196544677 -85648987 - L1PA16 LINE L1 -4 6162 6128 5533 144 45 7 chr1 196544693 196546408 -85647256 - L1MA4 LINE L1 -9 6291 4507 3210 146 26 8 chr1 196546402 196547005 -85646659 - L1MA4 LINE L1 -2364 3782 3169 * 556 240 77 51 chr1 196547031 196547227 -85646437 + MIR SINE MIR 58 258 -4 28 0 0 0 chr1 196552316 196552344 -85641320 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 196553087 196553122 -85640542 + AT_rich Low_complexity Low_complexity 1 35 0 422 275 133 28 chr1 196553507 196553718 -85639946 - MIR SINE MIR -28 234 2 232 343 46 46 chr1 196554421 196554637 -85639027 + MIR SINE MIR 47 262 0 2080 113 0 0 chr1 196554642 196554950 -85638714 - AluY SINE Alu 0 308 1 2246 104 0 0 chr1 196556072 196556369 -85637295 + AluSc SINE Alu 1 297 -12 21 0 0 0 chr1 196556374 196556395 -85637269 + AT_rich Low_complexity Low_complexity 1 21 0 2105 87 7 10 chr1 196556641 196556940 -85636724 - AluY SINE Alu -13 298 1 26 30 0 0 chr1 196557484 196557517 -85636147 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr1 196557556 196557588 -85636076 + AT_rich Low_complexity Low_complexity 1 32 0 1974 118 6 65 chr1 196559567 196559890 -85633774 - AluSx SINE Alu -8 304 1 210 258 43 86 chr1 196560061 196560154 -85633510 - L2 LINE L2 0 3313 3225 649 238 104 6 chr1 196560236 196560400 -85633264 + MER58A DNA MER1_type 30 209 -15 1621 160 45 79 chr1 196561498 196561854 -85631810 + MER2 DNA MER2_type 1 344 0 434 300 35 6 chr1 196562599 196562769 -85630895 - L1ME LINE L1 -420 5701 5527 267 217 0 0 chr1 196562919 196562979 -85630685 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 831 317 136 15 chr1 196564142 196564619 -85629045 - L3 LINE CR1 -361 1216 682 1923 140 16 0 chr1 196564619 196564927 -85628737 - L1PA16 LINE L1 -4 6162 5850 6924 28 1 12 chr1 196564929 196565761 -85627903 + L1PA3 LINE L1 5330 6152 -3 1242 88 0 59 chr1 196565764 196565968 -85627696 + L1P4 LINE L1 5352 5543 -618 421 228 82 114 chr1 196567015 196567270 -85626394 - L3 LINE CR1 -154 1423 1177 * 471 234 39 117 chr1 196567268 196567299 -85626365 - L2 LINE L2 0 3313 3281 2078 117 0 0 chr1 196567299 196567589 -85626075 - AluSx SINE Alu -22 290 1 471 234 39 117 chr1 196567589 196567813 -85625851 - L2 LINE L2 -32 3281 3078 241 339 233 0 chr1 196568101 196568290 -85625374 - L3 LINE CR1 -535 1042 810 218 404 68 21 chr1 196568345 196568580 -85625084 - L3 LINE CR1 -882 695 450 2098 121 0 0 chr1 196568594 196568876 -85624788 + AluSx SINE Alu 1 282 -30 485 308 194 0 chr1 196568895 196569106 -85624558 + MIR SINE MIR 3 254 -8 327 306 45 30 chr1 196569731 196569865 -85623799 - MIR SINE MIR -107 155 20 183 278 0 0 chr1 196570069 196570105 -85623559 - L3 LINE CR1 -1 1576 1541 23 33 0 0 chr1 196570152 196570182 -85623482 + AT_rich Low_complexity Low_complexity 1 30 0 209 132 0 26 chr1 196570224 196570262 -85623402 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 400 233 60 35 chr1 196570836 196570952 -85622712 + L2 LINE L2 3181 3299 -14 455 301 45 23 chr1 196571482 196571658 -85622006 + MER5A DNA MER1_type 7 186 -3 2059 129 0 16 chr1 196572574 196572884 -85620780 + AluSx SINE Alu 1 305 -7 1192 173 38 144 chr1 196573868 196574285 -85619379 + MLT1A2 LTR MaLR 1 373 -1 2598 197 54 11 chr1 196574502 196575039 -85618625 - MER68 LTR ERV1 -2 560 1 236 295 11 63 chr1 196576164 196576259 -85617405 + L2 LINE L2 3224 3313 0 247 244 30 148 chr1 196576607 196576685 -85616979 + MIR SINE MIR 49 108 -154 2230 82 0 0 chr1 196576685 196576990 -85616674 - AluSc SINE Alu 0 305 1 247 244 30 148 chr1 196576990 196577044 -85616620 + MIR SINE MIR 108 167 -95 43 20 0 0 chr1 196577110 196577160 -85616504 + AT_rich Low_complexity Low_complexity 1 50 0 491 276 158 0 chr1 196577201 196577353 -85616311 - MER5A DNA MER1_type -1 188 13 1037 156 12 12 chr1 196577715 196577888 -85615776 + FRAM SINE Alu 1 172 -4 191 368 0 11 chr1 196578080 196578167 -85615497 + MIR SINE MIR 16 101 -107 24 67 0 0 chr1 196578345 196578390 -85615274 + AT_rich Low_complexity Low_complexity 1 45 0 318 165 66 33 chr1 196578442 196578563 -85615101 - Zaphod DNA AcHobo -3088 943 819 2787 221 35 7 chr1 196578569 196579145 -85614519 - Zaphod DNA AcHobo -3439 592 1 22 0 0 0 chr1 196579219 196579241 -85614423 + AT_rich Low_complexity Low_complexity 1 22 0 1450 167 19 38 chr1 196580376 196580640 -85613024 - AluJo SINE Alu -28 284 26 460 296 151 0 chr1 196581172 196581331 -85612333 - MER5A DNA MER1_type 0 189 7 447 202 98 66 chr1 196581409 196581592 -85612072 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr1 196582178 196582206 -85611458 + AT_rich Low_complexity Low_complexity 1 28 0 1244 205 68 118 chr1 196583820 196583870 -85609794 + MLT1D LTR MaLR 1 52 -453 924 9 0 0 chr1 196583870 196583977 -85609687 + L1PA2 LINE L1 6049 6155 0 1244 205 68 118 chr1 196583977 196584385 -85609279 + MLT1D LTR MaLR 52 436 -69 1608 158 51 3 chr1 196584570 196584862 -85608802 - AluJb SINE Alu -2 310 5 226 122 82 41 chr1 196584954 196585003 -85608661 + L2 LINE L2 3262 3312 -1 12717 159 30 12 chr1 196585079 196585665 -85607999 - L1MA3 LINE L1 0 7724 7150 1631 139 78 0 chr1 196585665 196585923 -85607741 + AluSg SINE Alu 17 294 -16 12717 159 30 12 chr1 196585923 196588441 -85605223 - L1MA3 LINE L1 -574 7150 4480 2359 82 0 0 chr1 196588441 196588735 -85604929 - AluY SINE Alu -17 294 1 12717 159 30 12 chr1 196588735 196590851 -85602813 - L1MA3 LINE L1 -3244 4480 2404 2557 66 0 6 chr1 196590860 196591192 -85602472 - L1PA5 LINE L1 -5 6149 5820 4567 44 0 1 chr1 196591192 196591936 -85601728 + L1PA5 LINE L1 5066 5808 -346 * 13223 173 42 5 chr1 196591934 196594255 -85599409 - L1MA3 LINE L1 -5147 2418 11 1296 123 0 0 chr1 196594266 196594437 -85599227 - AluSq SINE Alu -9 304 134 2209 100 3 10 chr1 196594437 196594737 -85598927 - AluSx SINE Alu -12 300 3 363 249 116 61 chr1 196594986 196595167 -85598497 + L2 LINE L2 3108 3298 -15 1449 184 15 18 chr1 196595170 196595442 -85598222 + AluJo SINE Alu 3 273 -39 1868 171 0 7 chr1 196595627 196595931 -85597733 + AluJb SINE Alu 1 302 -10 585 273 157 15 chr1 196597706 196597981 -85595683 - L1MC4a LINE L1 -439 5723 5612 706 205 8 0 chr1 196597981 196598108 -85595556 - FLAM_C SINE Alu -5 128 1 585 273 157 15 chr1 196598108 196598129 -85595535 - L1MC4a LINE L1 -550 5612 5595 218 239 22 0 chr1 196599366 196599412 -85594252 - MIR SINE MIR 0 262 216 2074 102 9 50 chr1 196600577 196600900 -85592764 - AluSq SINE Alu -3 310 1 24 77 0 0 chr1 196601339 196601391 -85592273 + AT_rich Low_complexity Low_complexity 1 52 0 478 316 120 10 chr1 196601623 196601832 -85591832 + MIR SINE MIR 28 259 -3 474 233 17 50 chr1 196602022 196602142 -85591522 - MIR3 SINE MIR 0 208 93 2254 121 0 0 chr1 196602164 196602469 -85591195 - AluSq SINE Alu -8 305 1 1822 107 92 0 chr1 196603306 196603578 -85590086 - AluSx SINE Alu -15 297 1 29 28 0 0 chr1 196604151 196604187 -85589477 + AT_rich Low_complexity Low_complexity 1 36 0 511 283 94 55 chr1 196604318 196604647 -85589017 + HAL1 LINE L1 607 948 -1559 195 42 0 0 chr1 196604666 196604690 -85588974 + (TA)n Simple_repeat Simple_repeat 1 24 0 339 229 0 62 chr1 196604691 196604787 -85588877 + L1MC4 LINE L1 6614 6703 -1339 192 217 0 0 chr1 196604789 196604835 -85588829 + (TA)n Simple_repeat Simple_repeat 2 47 0 467 258 122 9 chr1 196604859 196605080 -85588584 + HAL1 LINE L1 1977 2222 -285 974 222 5 5 chr1 196605206 196605400 -85588264 + MER58A DNA MER1_type 2 195 -29 2187 113 7 0 chr1 196605469 196605769 -85587895 + AluY SINE Alu 1 302 -9 5417 139 25 55 chr1 196605781 196606053 -85587611 + L1MA8 LINE L1 4316 4595 -1551 1842 181 0 0 chr1 196606053 196606362 -85587302 - AluJb SINE Alu -3 309 1 5417 139 25 55 chr1 196606362 196607204 -85586460 + L1MA8 LINE L1 4595 5397 -749 4456 129 30 1 chr1 196607632 196608360 -85585304 + L1MA8 LINE L1 5379 6127 -164 645 202 9 0 chr1 196608373 196608487 -85585177 + MER58B DNA MER1_type 211 325 -16 613 158 86 14 chr1 196608567 196608706 -85584958 + L1 LINE L1 4312 4460 -1686 596 144 0 0 chr1 196608696 196608793 -85584871 + L1MA8 LINE L1 6150 6246 -45 * 870 73 8 8 chr1 196608793 196608916 -85584748 + L1PB1 LINE L1 6024 6146 -5 1317 145 0 10 chr1 196608931 196609131 -85584533 + AluJb SINE Alu 16 213 -99 312 241 70 95 chr1 196609206 196609364 -85584300 + HAL1 LINE L1 2348 2501 -6 21 36 0 0 chr1 196609364 196609392 -85584272 + AT_rich Low_complexity Low_complexity 1 28 0 192 339 94 31 chr1 196609944 196610071 -85583593 + L2 LINE L2 3179 3313 0 443 338 153 23 chr1 196611718 196612274 -85581390 + L2 LINE L2 2217 2844 -470 480 259 15 52 chr1 196612349 196612484 -85581180 + L2 LINE L2 3180 3309 -4 2392 91 13 0 chr1 196613699 196614008 -85579656 - AluSp SINE Alu 0 313 1 556 148 46 9 chr1 196614091 196614199 -85579465 - L1MA5A LINE L1 -6 6291 6180 22 35 0 0 chr1 196615306 196615335 -85578329 + AT_rich Low_complexity Low_complexity 1 29 0 1589 167 3 57 chr1 196615406 196615723 -85577941 + AluJo SINE Alu 1 300 -12 287 218 11 35 chr1 196616131 196616218 -85577446 + HAL1 LINE L1 2256 2340 -167 207 0 0 0 chr1 196616337 196616360 -85577304 + (A)n Simple_repeat Simple_repeat 1 23 0 730 212 75 17 chr1 196616920 196617161 -85576503 - Charlie1 DNA MER1_type 0 2761 2507 510 120 160 0 chr1 196617183 196617283 -85576381 - L1MA8 LINE L1 -159 6132 6017 28 0 0 0 chr1 196617923 196617951 -85575713 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr1 196618210 196618256 -85575408 + (CA)n Simple_repeat Simple_repeat 2 47 0 998 129 0 14 chr1 196618258 196618398 -85575266 - AluJ SINE Alu -27 285 148 867 156 0 7 chr1 196618467 196618608 -85575056 - AluJ SINE Alu -172 140 1 340 255 329 6 chr1 196618718 196618879 -85574785 - MIR SINE MIR -10 252 40 922 81 0 0 chr1 196618907 196619067 -85574597 + AluSg/x SINE Alu 172 331 0 419 219 0 196 chr1 196620123 196620342 -85573322 - MER5B DNA MER1_type 0 178 3 1329 189 126 7 chr1 196620367 196620669 -85572995 + MER2 DNA MER2_type 7 344 -1 223 295 90 13 chr1 196620701 196620779 -85572885 - MER91C DNA MER1_type -10 130 47 264 105 53 70 chr1 196621135 196621180 -85572484 - MLT2A1 LTR ERVL 0 444 399 267 31 0 0 chr1 196621180 196621212 -85572452 + (CA)n Simple_repeat Simple_repeat 2 33 0 264 105 53 70 chr1 196621212 196621223 -85572441 - MLT2A1 LTR ERVL -45 399 389 236 98 0 0 chr1 196621269 196621310 -85572354 + LTR66 LTR ERVL 398 438 -172 2686 89 38 8 chr1 196621325 196621717 -85571947 - MLT2A1 LTR ERVL -40 404 1 2063 122 0 0 chr1 196622810 196623096 -85570568 + AluSc SINE Alu 1 286 -23 893 294 126 11 chr1 196623605 196623888 -85569776 + HAL1 LINE L1 27 381 -2126 2271 106 0 0 chr1 196623888 196624181 -85569483 + AluSg SINE Alu 1 293 -17 893 294 126 11 chr1 196624181 196624340 -85569324 + HAL1 LINE L1 381 520 -1987 289 119 0 0 chr1 196624344 196624386 -85569278 - MSTA LTR MaLR 0 428 387 1110 200 43 5 chr1 196624387 196624597 -85569067 + AluJb SINE Alu 3 220 -92 290 262 24 12 chr1 196624604 196624688 -85568976 + GA-rich Low_complexity Low_complexity 5 89 0 2600 139 18 2 chr1 196624688 196625083 -85568581 - MSTA LTR MaLR -27 401 1 962 276 81 55 chr1 196625125 196625559 -85568105 + HAL1 LINE L1 555 999 -1508 13134 186 44 40 chr1 196625584 196626273 -85567391 - L1MA4A LINE L1 -3 7002 6317 234 0 0 0 chr1 196626273 196626299 -85567365 + (TTG)n Simple_repeat Simple_repeat 2 27 0 13134 186 44 40 chr1 196626299 196629283 -85564381 - L1MA4A LINE L1 -688 6317 3346 2093 115 6 13 chr1 196629283 196629595 -85564069 - AluSx SINE Alu -2 310 1 13134 186 44 40 chr1 196629595 196632857 -85560807 - L1MA4A LINE L1 -3659 3346 38 447 19 0 0 chr1 196632880 196632932 -85560732 + (CATA)n Simple_repeat Simple_repeat 2 53 0 240 204 163 0 chr1 196633002 196633100 -85560564 + HAL1 LINE L1 1091 1204 -1303 544 259 70 16 chr1 196633101 196633286 -85560378 + L1ME3 LINE L1 5805 5999 -163 1152 270 143 53 chr1 196633449 196633676 -85559988 + HAL1 LINE L1 1171 1376 -1131 655 255 13 13 chr1 196633676 196633833 -85559831 + FAM SINE Alu 1 157 -18 1152 270 143 53 chr1 196633833 196634286 -85559378 + HAL1 LINE L1 1376 1950 -557 2297 113 0 0 chr1 196634286 196634596 -85559068 - AluSg SINE Alu 0 310 1 1152 270 143 53 chr1 196634596 196634785 -85558879 + HAL1 LINE L1 1950 2120 -387 2208 100 0 0 chr1 196635042 196635332 -85558332 + AluY SINE Alu 1 290 -21 2593 133 13 53 chr1 196635463 196635753 -85557911 + Tigger2a DNA MER2_type 1 268 -2440 2368 97 0 3 chr1 196635753 196636061 -85557603 - AluSq SINE Alu -6 307 1 2593 133 13 53 chr1 196636061 196636221 -85557443 + Tigger2a DNA MER2_type 268 433 -1 459 0 0 0 chr1 196636222 196636273 -85557391 + (TG)n Simple_repeat Simple_repeat 2 52 0 1358 183 51 82 chr1 196636398 196636584 -85557080 - MER44D DNA MER2_type -1882 605 415 2280 113 7 0 chr1 196636584 196636894 -85556770 + AluSx SINE Alu 1 312 0 1358 183 51 82 chr1 196636894 196637063 -85556601 - MER44D DNA MER2_type -2072 415 206 26 30 0 0 chr1 196637948 196637981 -85555683 + AT_rich Low_complexity Low_complexity 1 33 0 245 170 19 19 chr1 196638034 196638087 -85555577 + L2 LINE L2 3258 3310 -3 215 288 14 14 chr1 196638441 196638514 -85555150 + GA-rich Low_complexity Low_complexity 2 74 0 182 292 21 0 chr1 196641035 196641083 -85552581 + MIR SINE MIR 7 55 -207 180 362 101 0 chr1 196641087 196641156 -85552508 - MIR SINE MIR -95 113 38 * 185 326 23 0 chr1 196641134 196641220 -85552444 + MIR SINE MIR 112 199 -63 25 0 0 0 chr1 196641237 196641262 -85552402 + AT_rich Low_complexity Low_complexity 1 25 0 186 174 0 0 chr1 196641337 196641383 -85552281 + T-rich Low_complexity Low_complexity 1 46 0 40166 74 5 3 chr1 196641387 196643583 -85550081 - L1PA5 LINE L1 -5 6149 3960 2328 81 0 3 chr1 196643583 196643878 -85549786 + AluY SINE Alu 1 294 -17 40166 74 5 3 chr1 196643878 196647811 -85545853 - L1PA5 LINE L1 -2194 3960 5 182 360 23 0 chr1 196647899 196647985 -85545679 + MIR SINE MIR 169 256 -6 231 135 58 0 chr1 196648356 196648408 -85545256 + Charlie7 DNA MER1_type 58 112 -2500 2730 29 0 0 chr1 196648838 196649146 -85544518 + AluY SINE Alu 1 308 -3 1637 210 3 3 chr1 196649426 196649726 -85543938 + AluJo SINE Alu 3 302 -10 873 199 13 0 chr1 196651976 196652132 -85541532 + FAM SINE Alu 1 158 -17 30 27 0 0 chr1 196652135 196652172 -85541492 + AT_rich Low_complexity Low_complexity 1 37 0 2194 226 90 58 chr1 196652728 196652827 -85540837 + L1M4 LINE L1 2568 2662 -3484 2069 103 0 67 chr1 196652827 196652947 -85540717 + AluY SINE Alu 1 127 -184 1017 142 0 0 chr1 196652947 196653116 -85540548 + (TA)n Simple_repeat Simple_repeat 2 170 0 2069 103 0 67 chr1 196653116 196653325 -85540339 + AluY SINE Alu 127 308 -3 2194 226 90 58 chr1 196653325 196654116 -85539548 + L1M4 LINE L1 2662 3486 -2660 2638 81 8 16 chr1 196654265 196654637 -85539027 - L1PA13 LINE L1 -14 6149 5781 3740 121 9 6 chr1 196654687 196655555 -85538109 - L1PA13 LINE L1 -380 5783 4916 833 216 41 9 chr1 196655548 196655766 -85537898 + L1M4 LINE L1 3519 3743 -2403 * 1571 175 42 7 chr1 196655808 196656094 -85537570 + AluJb SINE Alu 1 296 -16 232 233 0 0 chr1 196657566 196657609 -85536055 - L2 LINE L2 -4 3309 3267 2261 116 0 0 chr1 196658083 196658385 -85535279 - AluSg SINE Alu -8 302 1 180 212 0 0 chr1 196660220 196660253 -85533411 - L2 LINE L2 -1777 1537 1505 21 0 0 0 chr1 196661627 196661648 -85532016 + AT_rich Low_complexity Low_complexity 1 21 0 2180 104 3 3 chr1 196661943 196662240 -85531424 + AluSg SINE Alu 1 297 -13 2206 136 3 3 chr1 196662651 196662989 -85530675 - L1PA16 LINE L1 -6 6160 5823 588 275 43 19 chr1 196663105 196663164 -85530500 + MER58A DNA MER1_type 4 60 -2360 8483 77 6 3 chr1 196663164 196665104 -85528560 + L1PA7 LINE L1 4198 6152 -2 588 275 43 19 chr1 196665104 196665255 -85528409 + MER58A DNA MER1_type 60 219 -5 808 266 115 9 chr1 196665457 196665675 -85527989 + MIR SINE MIR 1 241 -21 637 265 38 11 chr1 196666456 196666641 -85527023 - MIR SINE MIR -16 246 57 1109 177 48 19 chr1 196667974 196668183 -85525481 - AluJb SINE Alu -11 301 87 233 299 13 13 chr1 196668625 196668702 -85524962 + MIR SINE MIR 75 151 -111 1862 175 19 8 chr1 196669143 196669509 -85524155 - L1MB4 LINE L1 -54 6126 5757 21 0 0 0 chr1 196669516 196669537 -85524127 + AT_rich Low_complexity Low_complexity 1 21 0 227 141 47 16 chr1 196669657 196669721 -85523943 + MIR SINE MIR 138 203 -59 475 319 98 25 chr1 196669924 196670054 -85523610 + MIR SINE MIR 10 162 -100 2160 167 41 10 chr1 196670054 196670467 -85523197 - MSTB LTR MaLR 0 426 1 475 319 98 25 chr1 196670467 196670540 -85523124 + MIR SINE MIR 162 228 -34 213 180 0 0 chr1 196670780 196670830 -85522834 + (TG)n Simple_repeat Simple_repeat 2 51 0 535 249 85 24 chr1 196671020 196671185 -85522479 - MIR SINE MIR -11 251 77 725 295 81 53 chr1 196671185 196671619 -85522045 + MLT1J LTR MaLR 1 446 -65 1784 162 3 7 chr1 196672478 196672780 -85520884 + L1PA16 LINE L1 5865 6165 -1 5685 93 24 11 chr1 196672785 196673664 -85520000 + L1MA2 LINE L1 5415 6304 0 30 0 0 0 chr1 196673664 196673694 -85519970 + AT_rich Low_complexity Low_complexity 1 30 0 2021 124 17 3 chr1 196674472 196674770 -85518894 - AluSg SINE Alu -8 302 1 323 347 74 26 chr1 196674988 196675178 -85518486 - MIR3 SINE MIR 0 208 10 209 275 9 37 chr1 196675203 196675312 -85518352 + (TA)n Simple_repeat Simple_repeat 1 106 0 266 159 72 0 chr1 196675316 196675385 -85518279 + L1MCa LINE L1 1995 2068 -4358 203 195 24 0 chr1 196675385 196675426 -85518238 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 310 206 55 0 chr1 196675512 196675585 -85518079 + L1MC4 LINE L1 7770 7846 -196 2306 81 3 0 chr1 196677015 196677319 -85516345 - AluSp SINE Alu 0 305 1 6804 56 25 46 chr1 196677801 196678717 -85514947 - MER11D LTR ERVK 0 897 1 207 250 0 0 chr1 196678815 196678855 -85514809 + MIR3 SINE MIR 161 200 -8 1411 170 20 65 chr1 196678990 196679284 -85514380 + AluJo SINE Alu 1 281 -31 495 0 0 0 chr1 196679300 196679355 -85514309 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 140 0 20 chr1 196679398 196679448 -85514216 + (TA)n Simple_repeat Simple_repeat 1 49 0 315 263 50 20 chr1 196679492 196679591 -85514073 + MIR SINE MIR 161 262 0 1579 183 49 3 chr1 196680273 196680558 -85513106 - AluJb SINE Alu -9 303 6 3716 187 47 53 chr1 196681760 196681852 -85511812 + L1MB8 LINE L1 4962 5053 -1125 2147 114 7 3 chr1 196681852 196682151 -85511513 - AluSx SINE Alu -12 300 1 3716 187 47 53 chr1 196682151 196682342 -85511322 + L1MB8 LINE L1 5053 5244 -934 4378 48 2 0 chr1 196682342 196682879 -85510785 + L1PA4 LINE L1 5614 6151 -4 3716 187 47 53 chr1 196682879 196683811 -85509853 + L1MB8 LINE L1 5244 6172 -6 365 286 73 76 chr1 196683861 196684176 -85509488 - L2 LINE L2 -725 2589 2276 265 156 20 19 chr1 196684184 196684389 -85509275 + AluJo SINE Alu 6 298 -2 203 277 60 0 chr1 196684465 196684548 -85509116 - L2 LINE L2 -1244 2070 1983 712 145 0 26 chr1 196684555 196684672 -85508992 + FLAM_A SINE Alu 8 121 -21 344 316 110 0 chr1 196684679 196684834 -85508830 - L2 LINE L2 -1318 1996 1825 225 310 90 73 chr1 196685903 196686100 -85507564 - MIR SINE MIR -24 238 34 776 221 0 7 chr1 196686535 196686680 -85506984 + AluJo SINE Alu 1 144 -168 1162 178 70 14 chr1 196687017 196687303 -85506361 + MER33 DNA MER1_type 1 302 -22 4391 78 7 26 chr1 196688026 196688642 -85505022 + L1PA10 LINE L1 5555 6158 -10 231 36 0 0 chr1 196688668 196688696 -85504968 + (TATG)n Simple_repeat Simple_repeat 2 29 0 2003 139 7 0 chr1 196688698 196688985 -85504679 - AluSq SINE Alu -24 289 1 3207 11 0 0 chr1 196689013 196689376 -85504288 - L1PA3 LINE L1 -176 5979 5617 1311 44 6 28 chr1 196689376 196689593 -85504071 + L1PA3 LINE L1 5979 6155 0 509 124 62 10 chr1 196689681 196689778 -85503886 - HSMAR2 DNA Mariner -2 1300 1199 4134 141 16 16 chr1 196689793 196689946 -85503718 - L1MA3 LINE L1 -13 7711 7559 2069 142 0 7 chr1 196689946 196690255 -85503409 - AluSx SINE Alu -5 307 1 2081 138 7 3 chr1 196690257 196690554 -85503110 - AluSx SINE Alu -14 298 1 4134 141 16 16 chr1 196690554 196692216 -85501448 - L1MA3 LINE L1 -166 7558 5896 225 0 0 0 chr1 196692216 196692241 -85501423 + (T)n Simple_repeat Simple_repeat 1 25 0 482 136 0 0 chr1 196692241 196692322 -85501342 + MSTB1 LTR MaLR 352 432 0 41087 31 21 1 chr1 196692442 196698469 -85495195 - L1HS LINE L1 -3 6152 1 8555 167 53 23 chr1 196698467 196700138 -85493526 - L1MA3 LINE L1 -1653 5912 4293 * 2262 104 3 0 chr1 196700138 196700437 -85493227 + AluSc SINE Alu 1 300 -9 8555 167 53 23 chr1 196700437 196702044 -85491620 - L1MA3 LINE L1 -3272 4293 2523 2772 65 6 3 chr1 196702047 196702400 -85491264 - THE1A LTR MaLR 0 355 2 2365 80 6 0 chr1 196702401 196702728 -85490936 - THE1A-int LTR MaLR 0 1580 1252 223 307 23 57 chr1 196753972 196753991 -85439673 - MIR SINE MIR -155 107 89 1464 187 63 14 chr1 196753991 196754339 -85439325 + MLT1A1 LTR MaLR 1 365 0 223 307 23 57 chr1 196754339 196754407 -85439257 - MIR SINE MIR -173 89 23 375 346 135 10 chr1 196754843 196755051 -85438613 + MIR SINE MIR 23 256 -6 2255 111 0 7 chr1 196755065 196755363 -85438301 - AluSg SINE Alu -12 298 3 312 179 12 12 chr1 196755365 196755449 -85438215 - L1M4 LINE L1 -3191 2955 2872 198 191 0 0 chr1 196755777 196755819 -85437845 + (TA)n Simple_repeat Simple_repeat 2 43 0 28 48 0 0 chr1 196756436 196756478 -85437186 + AT_rich Low_complexity Low_complexity 1 42 0 7833 14 5 0 chr1 196756483 196758108 -85435556 - L1PA2 LINE L1 0 6155 4527 2056 58 0 0 chr1 196758108 196758384 -85435280 + L1P LINE L1 4777 5052 -1094 1124 227 83 75 chr1 196758542 196758872 -85434792 + L1ME2 LINE L1 3560 3886 -2260 4793 86 100 21 chr1 196758872 196759595 -85434069 - LTR17 LTR ERV1 0 780 1 1124 227 83 75 chr1 196759595 196759948 -85433716 + L1ME2 LINE L1 3886 4249 -1897 700 221 55 17 chr1 196759948 196760183 -85433481 + L1ME2 LINE L1 4498 4741 -1405 2548 218 73 54 chr1 196760184 196760442 -85433222 + L1ME2 LINE L1 4985 5237 -927 1963 183 6 11 chr1 196760442 196760808 -85432856 + MLT1A1 LTR MaLR 2 365 0 2548 218 73 54 chr1 196760808 196760895 -85432769 + L1ME2 LINE L1 5237 5321 -843 1576 139 44 11 chr1 196760895 196761168 -85432496 + AluJb SINE Alu 23 304 -8 2548 218 73 54 chr1 196761168 196761963 -85431701 + L1ME2 LINE L1 5321 6155 -9 2065 148 0 3 chr1 196762258 196762561 -85431103 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 196763541 196763562 -85430102 + AT_rich Low_complexity Low_complexity 1 21 0 2398 157 77 9 chr1 196763922 196764387 -85429277 - L1PB4 LINE L1 -3 6153 5657 2179 16 0 0 chr1 196764487 196764737 -85428927 + L1PA2 LINE L1 5906 6155 0 514 295 11 6 chr1 196766375 196766558 -85427106 - L1M4 LINE L1 -1927 4219 4036 186 119 30 30 chr1 196766622 196766689 -85426975 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 29 0 0 0 chr1 196766689 196766718 -85426946 + AT_rich Low_complexity Low_complexity 1 29 0 181 258 48 16 chr1 196766723 196766785 -85426879 - L3 LINE CR1 -529 1048 985 199 306 20 0 chr1 196767375 196767424 -85426240 + MIR SINE MIR 32 81 -127 609 138 36 24 chr1 196768326 196768493 -85425171 + CT-rich Low_complexity Low_complexity 3 171 0 1698 194 0 0 chr1 196768494 196768772 -85424892 - AluSx SINE Alu -34 278 1 324 120 0 0 chr1 196769604 196769654 -85424010 + (TATG)n Simple_repeat Simple_repeat 4 53 0 648 261 23 9 chr1 196770664 196770879 -85422785 + L1MA9 LINE L1 6057 6274 -38 38 39 0 0 chr1 196770879 196770931 -85422733 + AT_rich Low_complexity Low_complexity 1 52 0 23960 91 12 3 chr1 196770938 196775305 -85418359 - L1PA7 LINE L1 -13 6456 2048 21242 34 1 0 chr1 196775298 196778007 -85415657 - L1P LINE L1 -1769 4377 1667 * 9487 92 31 0 chr1 196778007 196779413 -85414251 - L1PA7 LINE L1 -5009 1452 4 1070 289 54 18 chr1 196779591 196780034 -85413630 - LTR16B LTR ERVL 0 464 6 208 170 38 0 chr1 196780634 196780687 -85412977 - MER5C DNA MER1_type -160 164 110 1956 242 130 12 chr1 196780753 196781767 -85411897 - L1MC4 LINE L1 -139 7903 6597 257 96 96 0 chr1 196781810 196781862 -85411802 - L1MB7 LINE L1 -16 6168 6112 2143 114 0 3 chr1 196781862 196782151 -85411513 + AluSx SINE Alu 1 288 -24 930 177 16 21 chr1 196782167 196782353 -85411311 - L1MB7 LINE L1 -59 6125 5941 * 1899 209 31 44 chr1 196782349 196782831 -85410833 - L1M4 LINE L1 -5554 988 513 4172 108 34 0 chr1 196782832 196783506 -85410158 - L1MA5A LINE L1 -25 6272 5576 1746 229 96 18 chr1 196783517 196784006 -85409658 - L1M4 LINE L1 -6014 528 2 696 232 7 12 chr1 196784020 196784207 -85409457 - L1MC4 LINE L1 -1405 6590 6438 2116 277 97 10 chr1 196784937 196785640 -85408024 + L2 LINE L2 1772 2535 -779 524 266 16 0 chr1 196786104 196786228 -85407436 + L2 LINE L2 2485 2610 -704 1024 283 157 16 chr1 196786236 196786726 -85406938 + L2 LINE L2 2741 3302 -11 27 0 0 0 chr1 196787128 196787155 -85406509 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr1 196787288 196787325 -85406339 + AT_rich Low_complexity Low_complexity 1 37 0 5929 132 36 72 chr1 196787399 196787780 -85405884 + Tigger3b DNA MER2_type 4 397 -2631 2350 113 0 0 chr1 196787780 196788091 -85405573 - AluSx SINE Alu -1 311 1 1888 96 92 4 chr1 196788094 196788381 -85405283 - AluSx SINE Alu 0 310 1 5929 132 36 72 chr1 196788381 196789253 -85404411 + Tigger3b DNA MER2_type 399 1218 -13 2780 236 11 9 chr1 196789304 196789953 -85403711 - MER82 DNA MER2_type -2 651 2 21 57 0 0 chr1 196790164 196790199 -85403465 + AT_rich Low_complexity Low_complexity 1 35 0 261 83 0 0 chr1 196790380 196790416 -85403248 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 2352 79 16 3 chr1 196790418 196790722 -85402942 - AluSp SINE Alu -5 308 1 429 246 0 112 chr1 196790869 196791003 -85402661 + MIR SINE MIR 6 124 -138 207 88 0 0 chr1 196791003 196791037 -85402627 + (CCTG)n Simple_repeat Simple_repeat 2 35 0 321 128 51 13 chr1 196791037 196791106 -85402558 + T-rich Low_complexity Low_complexity 2 76 -6 300 111 0 0 chr1 196791106 196791151 -85402513 + (CCTCG)n Simple_repeat Simple_repeat 5 49 0 476 260 27 13 chr1 196791159 196791170 -85402494 + MIR SINE MIR 108 117 -145 1997 106 3 35 chr1 196791170 196791452 -85402212 - AluSx SINE Alu -39 273 1 476 260 27 13 chr1 196791452 196791590 -85402074 + MIR SINE MIR 117 259 -3 425 251 246 28 chr1 196793059 196793238 -85400426 + MIR SINE MIR 19 236 -26 313 288 62 156 chr1 196793236 196793639 -85400025 + L2 LINE L2 2903 3267 -5 * 10397 160 31 26 chr1 196793820 196794706 -85398958 - L1MA8 LINE L1 -165 6126 5246 2110 125 29 35 chr1 196794706 196795081 -85398583 - THE1C LTR MaLR -2 373 1 10397 160 31 26 chr1 196795081 196795939 -85397725 - L1MA8 LINE L1 -1045 5246 4394 5565 99 16 7 chr1 196795939 196796769 -85396895 - L1MA1 LINE L1 0 6302 5466 10397 160 31 26 chr1 196796769 196797956 -85395708 - L1MA8 LINE L1 -1897 4394 3182 1176 83 0 0 chr1 196797956 196798112 -85395552 - AluSg/x SINE Alu 0 312 157 1594 186 27 3 chr1 196798125 196798495 -85395169 - L1MA8 LINE L1 -2970 3176 2798 271 128 0 21 chr1 196798748 196798795 -85394869 - L1M1 LINE L1 -754 5551 5506 28 29 0 0 chr1 196798846 196798881 -85394783 + AT_rich Low_complexity Low_complexity 1 35 0 242 146 0 0 chr1 196799667 196799708 -85393956 + L1ME1 LINE L1 6121 6161 -5 180 103 0 0 chr1 196799749 196799772 -85393892 + (T)n Simple_repeat Simple_repeat 1 24 0 7626 26 0 0 chr1 196799772 196801366 -85392298 - L1PA3 LINE L1 0 6155 4564 1358 186 115 0 chr1 196802727 196802996 -85390668 + AluJb SINE Alu 1 300 -2 2696 228 106 45 chr1 196803474 196804300 -85389364 + L1ME2 LINE L1 2998 3919 -2227 4746 86 100 21 chr1 196804300 196805023 -85388641 - LTR17 LTR ERV1 0 780 1 2696 228 106 45 chr1 196805023 196805376 -85388288 + L1ME2 LINE L1 3919 4249 -1897 767 219 53 28 chr1 196805376 196805623 -85388041 + L1ME2 LINE L1 4498 4750 -1396 * 2788 218 73 64 chr1 196805612 196805870 -85387794 + L1ME2 LINE L1 4985 5239 -925 1971 183 6 11 chr1 196805870 196806236 -85387428 + MLT1A1 LTR MaLR 2 365 0 2788 218 73 64 chr1 196806236 196806323 -85387341 + L1ME2 LINE L1 5239 5324 -840 1569 139 44 11 chr1 196806323 196806596 -85387068 + AluJb SINE Alu 23 304 -8 2788 218 73 64 chr1 196806596 196807391 -85386273 + L1ME2 LINE L1 5324 6155 -9 1889 136 4 0 chr1 196807686 196807959 -85385705 + AluSq SINE Alu 1 274 -39 234 0 0 0 chr1 196807959 196807985 -85385679 + (TC)n Simple_repeat Simple_repeat 2 27 0 237 178 0 0 chr1 196807987 196808032 -85385632 + (CA)n Simple_repeat Simple_repeat 2 46 0 566 194 54 86 chr1 196808079 196808265 -85385399 + MER58C DNA MER1_type 35 214 -1 180 0 0 0 chr1 196808746 196808766 -85384898 + (T)n Simple_repeat Simple_repeat 1 20 0 335 339 65 8 chr1 196809668 196809792 -85383872 - L2 LINE L2 -5 3267 3137 311 352 95 67 chr1 196809924 196810382 -85383282 - L2 LINE L2 -189 3083 2639 1724 191 0 13 chr1 196810382 196810696 -85382968 + AluJb SINE Alu 1 310 -2 311 352 95 67 chr1 196810696 196810931 -85382733 - L2 LINE L2 -633 2639 2412 2212 75 4 4 chr1 196810931 196811239 -85382425 - AluY SINE Alu 0 308 1 288 0 0 0 chr1 196811239 196811271 -85382393 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1890 135 11 0 chr1 196811271 196811545 -85382119 - AluSx SINE Alu -32 280 4 311 352 95 67 chr1 196811545 196811699 -85381965 - L2 LINE L2 -859 2413 2216 202 275 121 74 chr1 196811788 196811937 -85381727 - L2 LINE L2 -1313 2001 1846 2205 100 3 16 chr1 196812336 196812646 -85381018 - AluSc SINE Alu -3 306 1 22 0 0 0 chr1 196812705 196812727 -85380937 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 196813915 196813946 -85379718 + AT_rich Low_complexity Low_complexity 1 31 0 584 280 56 81 chr1 196814172 196814604 -85379060 + L1ME3A LINE L1 5556 5976 -194 286 277 50 50 chr1 196814642 196814761 -85378903 + L1ME3A LINE L1 5959 6077 -93 37 0 0 0 chr1 196814853 196814890 -85378774 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 196815015 196815045 -85378619 + AT_rich Low_complexity Low_complexity 1 30 0 298 293 9 28 chr1 196815100 196815206 -85378458 - MLT1K LTR MaLR -75 513 410 194 317 189 43 chr1 196815862 196816026 -85377638 + MIR SINE MIR 43 230 -32 360 293 68 20 chr1 196816041 196816188 -85377476 + MIR SINE MIR 49 202 -60 26 64 0 0 chr1 196816217 196816264 -85377400 + AT_rich Low_complexity Low_complexity 1 47 0 1937 144 17 0 chr1 196816517 196816815 -85376849 - AluSx SINE Alu -9 303 1 393 265 108 36 chr1 196818470 196818636 -85375028 - MIR SINE MIR -11 251 74 268 302 94 9 chr1 196818861 196818967 -85374697 + L2 LINE L2 2681 2795 -519 1487 186 7 0 chr1 196818971 196819245 -85374419 - MER63 DNA MER1_type 0 1061 786 306 377 7 26 chr1 196819333 196819487 -85374177 - L2 LINE L2 0 3272 3122 407 199 252 44 chr1 196819622 196819828 -85373836 - MER2 DNA MER2_type 0 345 97 7838 14 5 0 chr1 196819886 196820837 -85372827 - L1PA3 LINE L1 0 6155 5204 4925 174 93 29 chr1 196820878 196822648 -85371016 - L1M1 LINE L1 -5004 2561 16 248 247 118 11 chr1 196822753 196822846 -85370818 + L2 LINE L2 3163 3265 -7 2010 117 34 10 chr1 196823008 196823306 -85370358 - AluSx SINE Alu -7 305 1 1089 275 40 27 chr1 196824122 196824496 -85369168 + L1MC4a LINE L1 5567 5945 -1863 1503 167 8 0 chr1 196824671 196824946 -85368718 - AluJb SINE Alu 0 311 35 24 0 0 0 chr1 196825783 196825807 -85367857 + AT_rich Low_complexity Low_complexity 1 24 0 2091 129 0 7 chr1 196827147 196827449 -85366215 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr1 196828429 196828450 -85365214 + AT_rich Low_complexity Low_complexity 1 21 0 4944 138 50 9 chr1 196828810 196829651 -85364013 - L1PB4 LINE L1 -3 6153 5279 1799 140 84 3 chr1 196829675 196829960 -85363704 - AluSg SINE Alu -2 308 1 1919 227 86 53 chr1 196832250 196832835 -85360829 - L1ME3A LINE L1 -4 6166 5563 384 22 0 0 chr1 196832897 196832942 -85360722 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 425 326 50 9 chr1 196833161 196833379 -85360285 + MIR SINE MIR 17 247 -15 12321 120 19 49 chr1 196834029 196834438 -85359226 + L1P3 LINE L1 1 421 -6040 253 0 54 0 chr1 196834438 196834475 -85359189 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 12321 120 19 49 chr1 196834475 196836598 -85357066 + L1P3 LINE L1 421 2544 -3917 2033 157 99 25 chr1 196836598 196837081 -85356583 - pTR5 LTR ERV1 -1177 1261 743 1758 181 18 25 chr1 196837081 196837517 -85356147 + pTR5 LTR ERV1 912 1344 -1094 4748 106 81 47 chr1 196837533 196838328 -85355336 + LTR12 LTR ERV1 5 826 0 1410 204 9 40 chr1 196838476 196838805 -85354859 - LTR1 LTR ERV1 -466 319 1 2290 169 19 19 chr1 196839041 196839467 -85354197 + MSTB LTR MaLR 1 426 0 403 273 99 19 chr1 196839523 196839684 -85353980 + L2 LINE L2 2584 2757 -557 408 313 153 20 chr1 196839925 196840174 -85353490 + L2 LINE L2 3027 3308 -5 1022 161 130 62 chr1 196841596 196841918 -85351746 + MER2 DNA MER2_type 1 344 0 944 178 0 35 chr1 196841964 196842133 -85351531 - FAM SINE Alu -12 163 1 1770 159 7 7 chr1 196842815 196843110 -85350554 + AluJo SINE Alu 1 295 -17 2354 103 3 0 chr1 196844514 196844826 -85348838 - AluSp SINE Alu 0 313 1 768 226 74 0 chr1 196845730 196845920 -85347744 + L1MB7 LINE L1 4730 4933 -1213 453 36 0 0 chr1 196845937 196845992 -85347672 + (TAGA)n Simple_repeat Simple_repeat 1 55 0 1935 130 0 39 chr1 196845996 196846303 -85347361 - AluJb SINE Alu -17 295 1 243 220 0 0 chr1 196846306 196846356 -85347308 + L1MB7 LINE L1 4924 4973 -1173 988 213 18 5 chr1 196846399 196846620 -85347044 + L1MB7 LINE L1 5942 6165 -19 1975 133 7 0 chr1 196847622 196847915 -85345749 - AluSc SINE Alu -14 295 1 2329 97 0 3 chr1 196848140 196848438 -85345226 - AluSq SINE Alu -16 297 1 2333 96 0 3 chr1 196848761 196849062 -85344602 - AluSq SINE Alu -13 300 1 182 356 14 0 chr1 196849551 196849624 -85344040 - L2 LINE L2 -554 2760 2687 583 291 98 25 chr1 196850289 196850615 -85343049 - L2 LINE L2 0 3313 2964 519 302 85 23 chr1 196850679 196850937 -85342727 - L2 LINE L2 -476 2838 2565 1246 75 0 0 chr1 196851514 196851675 -85341989 + L1PA3 LINE L1 5992 6152 -3 22 0 0 0 chr1 196851675 196851697 -85341967 + AT_rich Low_complexity Low_complexity 1 22 0 492 229 0 38 chr1 196851992 196852097 -85341567 - FLAM_A SINE Alu -41 101 1 496 316 19 0 chr1 196852725 196852880 -85340784 + MIR SINE MIR 67 224 -38 249 319 135 21 chr1 196853011 196853152 -85340512 - MER5A DNA MER1_type -1 188 32 1402 178 14 0 chr1 196853226 196853513 -85340151 + L1MA6 LINE L1 6009 6299 -1 1319 236 9 0 chr1 196853937 196854280 -85339384 + L1PA16 LINE L1 4266 4611 -1535 569 115 0 0 chr1 196854282 196854369 -85339295 - AluSg/x SINE Alu -9 303 217 1961 108 4 0 chr1 196854369 196854628 -85339036 - AluSx SINE Alu -52 260 1 5394 123 24 17 chr1 196854628 196856170 -85337494 + L1PA16 LINE L1 4605 6161 -5 2046 125 10 0 chr1 196856663 196856959 -85336705 - AluSx SINE Alu -13 299 1 2145 102 10 17 chr1 196857608 196857901 -85335763 + AluSc SINE Alu 1 291 -18 198 257 100 79 chr1 196858297 196858437 -85335227 + L3b LINE CR1 1288 1430 -153 710 210 149 28 chr1 196858622 196858836 -85334828 - MIR SINE MIR -21 241 2 192 319 5 99 chr1 196859076 196859267 -85334397 + L2 LINE L2 2926 3098 -174 416 276 89 8 chr1 196859298 196859421 -85334243 - L2 LINE L2 -2 3311 3179 * 1861 243 65 46 chr1 196859403 196859987 -85333677 - L2 LINE L2 -546 2768 2174 22 0 0 0 chr1 196860108 196860130 -85333534 + AT_rich Low_complexity Low_complexity 1 22 0 1974 137 3 50 chr1 196860642 196860963 -85332701 - AluJo SINE Alu -6 306 1 248 135 0 0 chr1 196861116 196861153 -85332511 - MSTB LTR MaLR -11 417 381 1273 119 0 0 chr1 196861153 196861329 -85332335 + AluSp SINE Alu 137 312 -1 2041 156 70 5 chr1 196861329 196861701 -85331963 - MSTB LTR MaLR -30 396 1 9116 176 18 7 chr1 196861701 196863334 -85330330 - MSTB-int LTR MaLR 0 1651 2 2397 166 12 9 chr1 196863334 196863755 -85329909 - MSTB LTR MaLR 0 426 5 225 337 11 33 chr1 196864186 196864278 -85329386 - MER5A DNA MER1_type -49 140 51 * 281 329 0 12 chr1 196864208 196864290 -85329374 + MER5A DNA MER1_type 81 161 -28 249 343 86 9 chr1 196864299 196864404 -85329260 - MIR SINE MIR -60 148 36 564 312 12 12 chr1 196865179 196865352 -85328312 - MER5B DNA MER1_type -5 173 1 192 353 216 9 chr1 196865352 196865464 -85328200 + MIR3 SINE MIR 12 147 -61 2417 161 26 25 chr1 196866244 196867040 -85326624 - L1M1 LINE L1 -625 5678 4887 1856 181 3 0 chr1 196867040 196867349 -85326315 - AluJo SINE Alu -2 310 1 2417 161 26 25 chr1 196867349 196867461 -85326203 - L1M1 LINE L1 -1416 4887 4777 1428 143 0 80 chr1 196867497 196867748 -85325916 + AluJb SINE Alu 74 304 -8 698 150 0 26 chr1 196867748 196867901 -85325763 + GA-rich Low_complexity Low_complexity 2 150 0 2206 129 7 0 chr1 196867924 196868226 -85325438 + AluSx SINE Alu 1 304 -8 2195 178 40 20 chr1 196868692 196869142 -85324522 - LOR1b LTR ERV1 0 461 3 453 127 0 13 chr1 196869252 196869359 -85324305 + L1PA13 LINE L1 6075 6180 0 243 0 0 0 chr1 196869778 196869805 -85323859 + (A)n Simple_repeat Simple_repeat 1 27 0 1816 189 102 15 chr1 196870217 196870677 -85322987 + L1MC4a LINE L1 7309 7808 0 247 217 148 52 chr1 196870684 196870834 -85322830 - MLT1H1 LTR MaLR -50 545 322 697 260 48 20 chr1 196870907 196871157 -85322507 - MLT1H1 LTR MaLR -298 257 1 450 269 160 17 chr1 196871201 196871376 -85322288 + MIR SINE MIR 12 211 -51 475 319 137 4 chr1 196872369 196872595 -85321069 + MIR SINE MIR 7 262 0 1910 183 3 0 chr1 196872808 196873114 -85320550 + AluJb SINE Alu 1 307 -5 21 36 0 0 chr1 196873551 196873579 -85320085 + AT_rich Low_complexity Low_complexity 1 28 0 1275 129 36 65 chr1 196874104 196874276 -85319388 - MER4D LTR ERV1 0 872 697 1787 171 7 23 chr1 196874276 196874575 -85319089 + AluJo SINE Alu 1 294 -18 2186 125 3 0 chr1 196874584 196874889 -85318775 + AluSx SINE Alu 3 308 -4 1275 129 36 65 chr1 196874889 196874984 -85318680 - MER4D LTR ERV1 -183 689 603 1264 170 4 17 chr1 196875007 196875237 -85318427 - AluJo SINE Alu -1 311 85 2893 172 52 21 chr1 196875237 196875561 -85318103 - MER4D LTR ERV1 -263 640 327 2133 59 30 11 chr1 196875561 196875832 -85317832 - AluY SINE Alu -8 303 28 2893 172 52 21 chr1 196875832 196876128 -85317536 - MER4D LTR ERV1 -576 327 1 256 397 75 11 chr1 196876216 196876483 -85317181 - L2 LINE L2 -2954 360 77 21 57 0 0 chr1 196878416 196878451 -85315213 + AT_rich Low_complexity Low_complexity 1 35 0 472 317 154 4 chr1 196878715 196878942 -85314722 + MIR SINE MIR 2 262 0 22 0 0 0 chr1 196879269 196879291 -85314373 + AT_rich Low_complexity Low_complexity 1 22 0 204 67 0 0 chr1 196880159 196880189 -85313475 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1713 151 13 50 chr1 196880193 196880491 -85313173 - AluJo SINE Alu -25 287 1 186 43 0 0 chr1 196881390 196881413 -85312251 + (TATG)n Simple_repeat Simple_repeat 2 24 0 464 282 128 46 chr1 196881576 196881771 -85311893 + MIR SINE MIR 12 222 -40 2132 110 0 3 chr1 196881848 196882139 -85311525 - AluSx SINE Alu -22 290 1 22 0 0 0 chr1 196882146 196882168 -85311496 + AT_rich Low_complexity Low_complexity 1 22 0 458 215 96 53 chr1 196882905 196883114 -85310550 - L1ME LINE L1 -336 5785 5568 193 145 32 0 chr1 196883199 196883261 -85310403 + (TA)n Simple_repeat Simple_repeat 1 64 0 1883 112 16 0 chr1 196883470 196883728 -85309936 + AluSg SINE Alu 35 296 -14 1794 86 31 21 chr1 196884115 196884405 -85309259 - L1PB3 LINE L1 -127 6027 5735 685 273 93 52 chr1 196884427 196884771 -85308893 + L2 LINE L2 2272 2629 -685 545 235 44 15 chr1 196884776 196884912 -85308752 - L2 LINE L2 -16 3297 3158 2110 151 20 86 chr1 196884915 196885002 -85308662 - MSTB LTR MaLR 0 426 335 2388 105 0 0 chr1 196885002 196885307 -85308357 + AluSx SINE Alu 1 305 -7 2110 151 20 86 chr1 196885307 196885695 -85307969 - MSTB LTR MaLR -91 335 1 216 211 19 0 chr1 196885742 196885794 -85307870 - L2 LINE L2 -712 2602 2550 4435 108 30 1 chr1 196885871 196886545 -85307119 - L1PA15 LINE L1 -1 6164 5472 362 297 29 14 chr1 196886564 196886702 -85306962 - L2 LINE L2 -2 3311 3172 1025 133 10 51 chr1 196886703 196886899 -85306765 - THE1B LTR MaLR 0 364 177 186 71 0 0 chr1 196886904 196886932 -85306732 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 943 171 77 65 chr1 196887038 196887348 -85306316 - SVA Other Other -643 743 430 1204 110 11 0 chr1 196887378 196887560 -85306104 - THE1B LTR MaLR -180 184 1 367 239 92 73 chr1 196887560 196887820 -85305844 - L2 LINE L2 -131 3182 2918 439 299 101 94 chr1 196887854 196888379 -85305285 + L2 LINE L2 2731 3262 -10 1939 152 0 0 chr1 196888515 196888805 -85304859 - AluSx SINE Alu -22 290 1 256 135 39 0 chr1 196888872 196888924 -85304740 - L1MB7 LINE L1 -17 6167 6114 1072 61 15 0 chr1 196888927 196889059 -85304605 + AluY SINE Alu 1 134 -177 2728 10 0 3 chr1 196889059 196889360 -85304304 + AluY SINE Alu 1 300 -11 24 91 0 0 chr1 196889392 196889458 -85304206 + AT_rich Low_complexity Low_complexity 1 66 0 210 216 0 0 chr1 196890635 196890672 -85302992 + C-rich Low_complexity Low_complexity 3 39 0 306 73 0 0 chr1 196890693 196890734 -85302930 + (CAG)n Simple_repeat Simple_repeat 3 43 0 297 162 0 0 chr1 196890833 196890901 -85302763 + (CA)n Simple_repeat Simple_repeat 1 68 0 2254 100 3 7 chr1 196893227 196893527 -85300137 + AluSp SINE Alu 1 299 -14 1912 112 65 4 chr1 196894694 196894971 -85298693 + AluSx SINE Alu 1 294 -18 1451 149 11 129 chr1 196895184 196895533 -85298131 - AluJb SINE Alu -4 308 1 180 274 20 0 chr1 196896072 196896123 -85297541 - L2 LINE L2 -4 3309 3258 2186 135 0 0 chr1 196896419 196896723 -85296941 - AluSx SINE Alu -8 304 1 1616 191 0 27 chr1 196897242 196897536 -85296128 + AluJo SINE Alu 4 289 -23 2170 130 0 3 chr1 196897709 196898008 -85295656 - AluSx SINE Alu -14 298 1 22 35 0 0 chr1 196898103 196898132 -85295532 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 196898164 196898185 -85295479 + AT_rich Low_complexity Low_complexity 1 21 0 1763 163 3 29 chr1 196898736 196898856 -85294808 + AluJo SINE Alu 1 123 -189 247 25 50 0 chr1 196898856 196898896 -85294768 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2362 80 0 29 chr1 196898897 196899208 -85294456 - AluY SINE Alu -9 302 1 1763 163 3 29 chr1 196899208 196899392 -85294272 + AluJo SINE Alu 122 299 -13 2252 115 0 13 chr1 196899566 196899879 -85293785 - AluSq SINE Alu -4 309 1 344 228 54 33 chr1 196901098 196901190 -85292474 - L2 LINE L2 0 3313 3220 192 111 0 0 chr1 196901353 196901380 -85292284 - L2 LINE L2 -715 2599 2573 1648 136 35 31 chr1 196901746 196902032 -85291632 + AluJb SINE Alu 10 296 -16 1805 254 72 42 chr1 196903537 196904336 -85289328 - L2 LINE L2 -82 3231 2408 21 57 0 0 chr1 196904423 196904458 -85289206 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 196904810 196904831 -85288833 + AT_rich Low_complexity Low_complexity 1 21 0 35 71 0 0 chr1 196905165 196905235 -85288429 + AT_rich Low_complexity Low_complexity 1 70 0 253 163 233 0 chr1 196905533 196905619 -85288045 + MER112 DNA MER1_type 65 170 -90 1493 147 29 25 chr1 196905622 196905901 -85287763 - AluSx SINE Alu -19 293 14 185 129 32 0 chr1 196906024 196906055 -85287609 + MER5B DNA MER1_type 127 158 -20 21 0 0 0 chr1 196906097 196906118 -85287546 + AT_rich Low_complexity Low_complexity 1 21 0 2310 100 0 3 chr1 196906140 196906449 -85287215 - AluSg1 SINE Alu -1 308 1 191 263 0 35 chr1 196906626 196906683 -85286981 - L2 LINE L2 -12 3260 3206 204 304 18 0 chr1 196906892 196906948 -85286716 - MIR SINE MIR -62 146 90 192 318 63 48 chr1 196907036 196907099 -85286565 - MIR SINE MIR -111 97 34 2327 104 16 0 chr1 196907526 196907833 -85285831 + AluSx SINE Alu 1 312 0 207 0 0 0 chr1 196908029 196908052 -85285612 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 196908564 196908586 -85285078 + AT_rich Low_complexity Low_complexity 1 22 0 1861 243 65 46 chr1 196908707 196909291 -85284373 + L2 LINE L2 2174 2768 -546 416 276 89 8 chr1 196909273 196909396 -85284268 + L2 LINE L2 3179 3311 -2 * 192 319 5 99 chr1 196909427 196909618 -85284046 - L2 LINE L2 -174 3098 2926 710 210 149 28 chr1 196909858 196910072 -85283592 + MIR SINE MIR 2 241 -21 198 257 100 79 chr1 196910257 196910397 -85283267 - L3b LINE CR1 -153 1430 1288 2145 102 10 17 chr1 196910794 196911087 -85282577 - AluSc SINE Alu -18 291 1 2046 125 10 0 chr1 196911734 196912030 -85281634 + AluSx SINE Alu 1 299 -13 5394 123 18 6 chr1 196912523 196914065 -85279599 - L1PA16 LINE L1 -5 6161 4605 2166 113 3 3 chr1 196914065 196914367 -85279297 + AluSx SINE Alu 1 302 -10 2927 178 37 0 chr1 196914367 196914941 -85278723 - L1MB7 LINE L1 -63 6121 5527 1887 190 38 99 chr1 196914941 196915122 -85278542 + LTR53 LTR ERVL 1 192 -327 704 214 97 0 chr1 196915122 196915276 -85278388 - FAM SINE Alu -5 170 2 1887 190 38 99 chr1 196915276 196915647 -85278017 + LTR53 LTR ERVL 192 519 0 652 170 30 61 chr1 196915647 196915787 -85277877 - L1MB7 LINE L1 -653 5531 5397 317 71 0 0 chr1 196915787 196915829 -85277835 + 5S rRNA rRNA 1 42 -79 652 170 30 61 chr1 196915829 196915946 -85277718 - L1MB7 LINE L1 -787 5397 5278 1280 160 15 0 chr1 196915953 196916153 -85277511 - AluJo SINE Alu -24 288 86 2765 176 75 14 chr1 196916182 196916417 -85277247 - L1MB7 LINE L1 -920 5226 5007 2230 124 45 24 chr1 196916417 196916797 -85276867 + MLT1B LTR MaLR 3 390 0 2765 176 75 14 chr1 196916797 196917202 -85276462 - L1MB7 LINE L1 -1139 5007 4547 2564 118 60 34 chr1 196917202 196917798 -85275866 + MER4B LTR ERV1 1 779 0 692 235 17 17 chr1 196917798 196918028 -85275636 - L1MB7 LINE L1 -1596 4550 4321 750 81 0 0 chr1 196918029 196918128 -85275536 - AluY SINE Alu -11 300 202 584 197 25 59 chr1 196918146 196918251 -85275413 - L1MB7 LINE L1 -1832 4314 4218 1921 144 41 36 chr1 196918251 196918613 -85275051 - THE1B LTR MaLR 0 364 1 584 197 25 59 chr1 196918613 196918710 -85274954 - L1MB7 LINE L1 -1928 4218 4119 4014 144 22 10 chr1 196918713 196919406 -85274258 + MER50 LTR ERV1 5 705 -29 340 158 0 0 chr1 196919408 196919465 -85274199 - L1MB7 LINE L1 -2021 4125 4069 3895 132 30 11 chr1 196919543 196920203 -85273461 - LTR8A LTR ERV1 0 727 55 1342 94 0 0 chr1 196920203 196920384 -85273280 + AluY SINE Alu 126 306 -5 374 280 147 90 chr1 196921341 196921641 -85272023 - L2 LINE L2 -1 3271 2955 307 374 20 27 chr1 196921692 196921839 -85271825 + MIR3 SINE MIR 51 196 -12 25 31 0 0 chr1 196922317 196922349 -85271315 + AT_rich Low_complexity Low_complexity 1 32 0 246 250 0 0 chr1 196922358 196922410 -85271254 - MIR SINE MIR -8 254 203 2283 94 7 3 chr1 196922424 196922732 -85270932 + AluSg1 SINE Alu 1 309 0 1818 124 9 42 chr1 196922756 196922803 -85270861 - L1MB3 LINE L1 0 6183 6136 1916 135 37 3 chr1 196922803 196923100 -85270564 + AluSx SINE Alu 1 307 -5 1818 124 9 42 chr1 196923100 196923383 -85270281 - L1MB3 LINE L1 -47 6136 5864 464 282 13 20 chr1 196923519 196923668 -85269996 - MIR SINE MIR -109 153 6 324 0 0 0 chr1 196923671 196923707 -85269957 + (TG)n Simple_repeat Simple_repeat 2 37 0 648 258 0 0 chr1 196923769 196923901 -85269763 + FLAM_A SINE Alu 2 133 0 891 171 0 0 chr1 196924832 196924972 -85268692 + FLAM_C SINE Alu 1 140 -3 432 111 0 16 chr1 196925005 196925068 -85268596 + AluJ/FRAM SINE Alu 232 293 -19 1792 180 7 0 chr1 196925122 196925417 -85268247 + AluJo SINE Alu 1 297 -15 323 287 83 72 chr1 196925428 196925776 -85267888 - MLT1J LTR MaLR -50 461 110 21 0 0 0 chr1 196925813 196925834 -85267830 + AT_rich Low_complexity Low_complexity 1 21 0 2335 91 3 0 chr1 196925852 196926148 -85267516 - AluSp SINE Alu -16 297 1 2162 115 3 16 chr1 196926623 196926927 -85266737 + AluSq SINE Alu 1 300 -13 227 275 42 63 chr1 196927698 196927840 -85265824 - MLT1J LTR MaLR -41 470 332 882 222 58 0 chr1 196927842 196928049 -85265615 - MER20 DNA MER1_type 0 219 1 1821 256 82 40 chr1 196928101 196929028 -85264636 + L1MEc LINE L1 846 1811 -4585 2230 103 0 3 chr1 196929138 196929428 -85264236 - AluSg SINE Alu -21 289 1 216 258 30 30 chr1 196929572 196929638 -85264026 + MER91B DNA MER1_type 23 88 -102 1731 110 0 0 chr1 196930375 196930661 -85263003 + AluSq SINE Alu 58 343 0 9552 42 4 1 chr1 196931111 196933058 -85260606 - L1PA5 LINE L1 -8 6146 4200 4693 111 36 13 chr1 196933224 196933980 -85259684 + LTR17 LTR ERV1 1 773 -7 2047 119 0 7 chr1 196934237 196934532 -85259132 - AluSc SINE Alu -1 308 16 2453 71 3 0 chr1 196934547 196934855 -85258809 - AluY SINE Alu 0 311 3 2555 68 0 3 chr1 196935590 196935900 -85257764 - AluSq SINE Alu 0 313 5 22 0 0 0 chr1 196937342 196937364 -85256300 + AT_rich Low_complexity Low_complexity 1 22 0 294 327 139 68 chr1 196937418 196937661 -85256003 - L2 LINE L2 -1 3271 3047 2378 110 0 0 chr1 196937661 196937971 -85255693 + AluSx SINE Alu 1 310 -2 294 327 139 68 chr1 196937971 196938396 -85255268 - L2 LINE L2 -225 3047 2556 223 333 56 25 chr1 196939007 196939169 -85254495 + L2 LINE L2 2564 2730 -584 1724 175 0 7 chr1 196939268 196939554 -85254110 - AluSx SINE Alu -28 284 1 1622 195 0 10 chr1 196940466 196940768 -85252896 + AluSx SINE Alu 1 299 -13 2029 105 33 36 chr1 196940883 196941187 -85252477 + AluSq SINE Alu 1 303 -10 190 309 131 12 chr1 196941187 196941271 -85252393 - L2 LINE L2 -268 3045 2952 2356 102 3 0 chr1 196941451 196941755 -85251909 + AluSx SINE Alu 1 305 -7 250 296 83 19 chr1 196942656 196942764 -85250900 + MIR3 SINE MIR 60 174 -34 530 235 115 60 chr1 196942794 196943028 -85250636 + L3 LINE CR1 1061 1307 -270 608 244 5 50 chr1 196943045 196943246 -85250418 + L1MA10 LINE L1 6131 6322 -12 2362 103 6 0 chr1 196943393 196943704 -85249960 + AluSq SINE Alu 1 313 0 1967 146 3 3 chr1 196944242 196944537 -85249127 - AluSx SINE Alu -17 295 1 445 293 138 6 chr1 196944963 196945130 -85248534 - MIR SINE MIR -3 259 71 1135 216 67 94 chr1 196945705 196946111 -85247553 + MER34B LTR ERV1 1 372 -193 1571 187 13 46 chr1 196946111 196946416 -85247248 - AluJb SINE Alu -17 295 1 1135 216 67 94 chr1 196946416 196946601 -85247063 + MER34B LTR ERV1 372 560 -5 626 202 9 0 chr1 196946737 196946846 -85246818 + FLAM_A SINE Alu 13 122 -20 2280 100 0 0 chr1 196947268 196947558 -85246106 + AluSg SINE Alu 2 291 -19 276 126 39 19 chr1 196947988 196948091 -85245573 + (TG)n Simple_repeat Simple_repeat 1 105 0 320 151 54 6 chr1 196948122 196948288 -85245376 + (TG)n Simple_repeat Simple_repeat 2 175 0 1015 194 0 0 chr1 196948478 196948653 -85245011 - FAM SINE Alu 0 175 1 1941 80 14 40 chr1 196948686 196948961 -85244703 + AluY SINE Alu 33 300 -11 24 91 0 0 chr1 196948993 196949059 -85244605 + AT_rich Low_complexity Low_complexity 1 66 0 245 150 250 0 chr1 196949784 196949864 -85243800 + MER112 DNA MER1_type 65 164 -96 2166 109 24 3 chr1 196949867 196950160 -85243504 - AluSx SINE Alu -13 299 1 216 0 0 0 chr1 196950160 196950184 -85243480 + (TATTG)n Simple_repeat Simple_repeat 2 25 0 2203 107 23 0 chr1 196951318 196951617 -85242047 - AluSp SINE Alu -7 306 1 2407 67 3 3 chr1 196951906 196952203 -85241461 - AluY SINE Alu -14 297 1 183 42 0 0 chr1 196952208 196952232 -85241432 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 226 225 0 0 chr1 196952468 196952508 -85241156 - L2 LINE L2 -19 3253 3214 * 1512 300 104 55 chr1 196952507 196953762 -85239902 - L2 LINE L2 -224 3048 1735 1751 172 0 43 chr1 196953768 196953901 -85239763 + AluJo SINE Alu 1 138 -174 1920 148 0 30 chr1 196953901 196954199 -85239465 + AluJb SINE Alu 1 289 -23 1751 172 0 43 chr1 196954199 196954391 -85239273 + AluJo SINE Alu 138 312 0 216 0 0 0 chr1 196954493 196954517 -85239147 + (A)n Simple_repeat Simple_repeat 1 24 0 333 265 0 51 chr1 196954677 196954775 -85238889 - L2 LINE L2 -24 3289 3197 289 385 19 6 chr1 196955416 196955572 -85238092 - L2 LINE L2 -2089 1225 1068 518 118 0 54 chr1 196955608 196955701 -85237963 + MER63 DNA MER1_type 39 752 -84 1901 142 3 3 chr1 196956051 196956339 -85237325 + AluSx SINE Alu 14 301 -11 2208 104 0 3 chr1 196957282 196957579 -85236085 + AluSg SINE Alu 1 296 -14 1284 164 230 0 chr1 196957845 196958119 -85235545 - MER1B DNA MER1_type 0 337 1 22 0 0 0 chr1 196958708 196958730 -85234934 + AT_rich Low_complexity Low_complexity 1 22 0 1352 152 47 7 chr1 196958879 196959156 -85234508 + L1MA4 LINE L1 6011 6298 -2 1705 142 19 92 chr1 196959165 196959309 -85234355 + AluSx SINE Alu 1 154 -158 2081 128 0 0 chr1 196959309 196959598 -85234066 + AluSx SINE Alu 1 289 -23 222 105 0 0 chr1 196959598 196959636 -85234028 + (TA)n Simple_repeat Simple_repeat 2 39 0 1705 142 19 92 chr1 196959636 196959815 -85233849 + AluSx SINE Alu 152 301 -11 22 0 0 0 chr1 196959941 196959963 -85233701 + AT_rich Low_complexity Low_complexity 1 22 0 4001 149 65 13 chr1 196960867 196960903 -85232761 - L1PA16 LINE L1 -3 6163 6130 2055 120 6 29 chr1 196960903 196961219 -85232445 + AluSx SINE Alu 1 309 -3 4001 149 65 13 chr1 196961219 196961529 -85232135 - L1PA16 LINE L1 -36 6130 5838 2063 126 34 0 chr1 196961529 196961823 -85231841 - AluSq SINE Alu -9 304 1 4001 149 65 13 chr1 196961823 196962238 -85231426 - L1PA16 LINE L1 -328 5838 5361 1036 157 0 46 chr1 196962238 196962435 -85231229 - MLT1B LTR MaLR -35 355 168 1004 189 0 17 chr1 196962438 196962613 -85231051 - FAM SINE Alu -13 172 1 1055 82 59 6 chr1 196962614 196962784 -85230880 - MLT1B LTR MaLR -211 179 1 230 336 30 30 chr1 196963514 196963648 -85230016 + L2 LINE L2 2597 2730 -584 555 278 61 27 chr1 196963782 196963982 -85229682 + MIR SINE MIR 4 211 -51 260 246 18 0 chr1 196964018 196964075 -85229589 + L2 LINE L2 2989 3046 -226 630 300 50 29 chr1 196964130 196964370 -85229294 + MIR SINE MIR 17 261 -1 515 203 182 20 chr1 196965210 196965358 -85228306 - MLT1H LTR MaLR 0 549 378 233 181 83 0 chr1 196965686 196965758 -85227906 + (TTTAA)n Simple_repeat Simple_repeat 3 80 0 2312 107 0 0 chr1 196965778 196966077 -85227587 - AluSx SINE Alu -11 301 3 24 53 0 0 chr1 196966353 196966391 -85227273 + AT_rich Low_complexity Low_complexity 1 38 0 2372 115 0 0 chr1 196967313 196967625 -85226039 + AluSx SINE Alu 1 312 0 668 272 60 0 chr1 196968207 196968391 -85225273 - MIR SINE MIR -54 208 14 1577 184 37 40 chr1 196968504 196968671 -85224993 - AluJb SINE Alu -14 298 131 546 91 0 0 chr1 196968671 196968748 -85224916 + (TG)n Simple_repeat Simple_repeat 2 78 0 1577 184 37 40 chr1 196968748 196968879 -85224785 - AluJb SINE Alu -181 131 1 563 306 79 50 chr1 196968937 196969254 -85224410 - L2 LINE L2 0 3313 2988 23 0 0 0 chr1 196969339 196969362 -85224302 + AT_rich Low_complexity Low_complexity 1 23 0 2351 84 3 0 chr1 196969447 196969745 -85223919 + AluSp SINE Alu 1 299 -14 23 0 0 0 chr1 196969901 196969924 -85223740 + GC_rich Low_complexity Low_complexity 1 23 0 616 330 245 11 chr1 196970058 196970600 -85223064 - L2 LINE L2 -343 2971 2303 573 126 0 0 chr1 196970856 196970943 -85222721 + MLT1J1 LTR MaLR 1 87 -359 713 302 54 39 chr1 196971071 196971402 -85222262 + MLT1J1 LTR MaLR 95 430 -16 2261 104 0 3 chr1 196972223 196972521 -85221143 + AluSq SINE Alu 1 297 -16 2489 33 40 3 chr1 196973946 196974246 -85219418 + AluY SINE Alu 1 311 0 252 0 0 0 chr1 196974327 196974355 -85219309 + (TG)n Simple_repeat Simple_repeat 2 29 0 1932 89 73 86 chr1 196975829 196976142 -85217522 + AluSx SINE Alu 2 310 -2 294 253 141 22 chr1 196976501 196976770 -85216894 + L1M4 LINE L1 2699 2999 -3147 7418 20 0 0 chr1 196976889 196977745 -85215919 + L1PA3 LINE L1 5300 6155 0 374 96 96 0 chr1 196977845 196977918 -85215746 + MER2 DNA MER2_type 130 209 -136 304 377 7 26 chr1 196978144 196978298 -85215366 + L2 LINE L2 3122 3272 0 1401 186 7 0 chr1 196978386 196978660 -85215004 + MER63 DNA MER1_type 785 1060 0 270 302 94 9 chr1 196978664 196978770 -85214894 - L2 LINE L2 -519 2795 2681 384 265 108 36 chr1 196978994 196979160 -85214504 + MIR SINE MIR 74 251 -11 1804 135 3 35 chr1 196980817 196981136 -85212528 + AluY SINE Alu 3 311 0 273 256 141 22 chr1 196981494 196981763 -85211901 + L1M4 LINE L1 2699 2999 -3147 327 331 7 0 chr1 196981994 196982130 -85211534 + L1M4 LINE L1 3322 3458 -2688 378 263 106 45 chr1 196982782 196982980 -85210684 - MIR SINE MIR -30 232 23 41003 31 22 1 chr1 196983517 196989533 -85204131 - L1PA2 LINE L1 0 6155 12 1924 202 74 39 chr1 196990930 196991503 -85202161 + MLT1E2 LTR MaLR 20 503 -2 973 165 46 36 chr1 196991838 196992032 -85201632 - AluJb SINE Alu -13 299 104 1402 178 14 0 chr1 196992497 196992784 -85200880 - L1MA6 LINE L1 -1 6299 6009 249 319 135 21 chr1 196992858 196992999 -85200665 + MER5A DNA MER1_type 32 188 -1 496 316 19 0 chr1 196993130 196993285 -85200379 - MIR SINE MIR -38 224 67 483 229 0 38 chr1 196993912 196994017 -85199647 + FLAM_A SINE Alu 1 101 -41 22 0 0 0 chr1 196994312 196994334 -85199330 + AT_rich Low_complexity Low_complexity 1 22 0 1240 106 0 0 chr1 196994334 196994504 -85199160 - L1PA3 LINE L1 -3 6152 5983 519 302 85 23 chr1 196995071 196995329 -85198335 + L2 LINE L2 2565 2838 -476 583 291 98 25 chr1 196995393 196995719 -85197945 + L2 LINE L2 2964 3313 0 182 356 14 0 chr1 196996384 196996457 -85197207 + L2 LINE L2 2687 2760 -554 2333 96 0 3 chr1 196996946 196997247 -85196417 + AluSq SINE Alu 1 300 -13 2329 97 0 3 chr1 196997570 196997868 -85195796 + AluSq SINE Alu 1 297 -16 2141 116 10 0 chr1 196998093 196998396 -85195268 + AluY SINE Alu 1 306 -5 374 280 147 90 chr1 196999353 196999653 -85194011 - L2 LINE L2 -1 3271 2955 307 374 20 27 chr1 196999704 196999851 -85193813 + MIR3 SINE MIR 51 196 -12 25 31 0 0 chr1 197000329 197000361 -85193303 + AT_rich Low_complexity Low_complexity 1 32 0 258 231 0 0 chr1 197000370 197000422 -85193242 - MIR SINE MIR -8 254 203 2232 95 13 0 chr1 197000436 197000741 -85192923 + AluSg1 SINE Alu 1 309 0 2129 99 38 0 chr1 197000812 197001105 -85192559 + AluSx SINE Alu 1 304 -8 1290 148 8 61 chr1 197001209 197001472 -85192192 + THE1B LTR MaLR 116 364 0 23 68 0 0 chr1 197001587 197001631 -85192033 + AT_rich Low_complexity Low_complexity 1 44 0 737 169 71 54 chr1 197002005 197002189 -85191475 + L1MC/D LINE L1 5625 5811 -1974 * 834 29 0 0 chr1 197002182 197002286 -85191378 - L1P LINE L1 -1038 5108 5005 2312 110 0 3 chr1 197003148 197003458 -85190206 + AluSx SINE Alu 1 309 -3 2337 88 0 16 chr1 197004066 197004374 -85189290 + AluY SINE Alu 1 303 -8 2349 101 16 0 chr1 197005347 197005654 -85188010 - AluSx SINE Alu 0 312 1 192 318 63 48 chr1 197006081 197006144 -85187520 + MIR SINE MIR 34 97 -111 204 304 18 0 chr1 197006232 197006288 -85187376 + MIR SINE MIR 90 146 -62 191 263 0 35 chr1 197006497 197006554 -85187110 + L2 LINE L2 3206 3260 -12 2366 94 0 3 chr1 197006731 197007040 -85186624 + AluSg1 SINE Alu 1 308 -1 21 0 0 0 chr1 197007062 197007083 -85186581 + AT_rich Low_complexity Low_complexity 1 21 0 185 129 32 0 chr1 197007125 197007156 -85186508 - MER5B DNA MER1_type -20 158 127 2244 105 0 0 chr1 197007261 197007557 -85186107 + AluSx SINE Alu 1 296 -16 198 301 137 0 chr1 197008044 197008117 -85185547 + MIR3 SINE MIR 115 197 -11 22 0 0 0 chr1 197008532 197008554 -85185110 + AT_rich Low_complexity Low_complexity 1 22 0 25 65 0 0 chr1 197008601 197008647 -85185017 + AT_rich Low_complexity Low_complexity 1 46 0 1661 170 33 19 chr1 197008652 197008923 -85184741 - AluJb SINE Alu -26 286 12 1037 209 9 9 chr1 197008959 197009174 -85184490 + MER20 DNA MER1_type 4 218 -1 4791 73 47 12 chr1 197009498 197009816 -85183848 + L1PA12 LINE L1 5465 5770 -398 2324 84 0 7 chr1 197009816 197010113 -85183551 + AluY SINE Alu 1 295 -16 4791 73 47 12 chr1 197010113 197010474 -85183190 + L1PA12 LINE L1 5770 6168 0 207 0 0 0 chr1 197010570 197010593 -85183071 + (T)n Simple_repeat Simple_repeat 1 23 0 714 218 109 13 chr1 197010925 197011081 -85182583 + AluJb SINE Alu 125 295 -17 5049 162 39 27 chr1 197011397 197011528 -85182136 - L1MA9 LINE L1 -2 6310 6182 213 39 0 0 chr1 197011528 197011554 -85182110 + (TG)n Simple_repeat Simple_repeat 1 26 0 5049 162 39 27 chr1 197011554 197012856 -85180808 - L1MA9 LINE L1 -130 6182 4858 21 0 0 0 chr1 197013415 197013436 -85180228 + AT_rich Low_complexity Low_complexity 1 21 0 2137 124 3 0 chr1 197013512 197013810 -85179854 - AluSx SINE Alu -13 299 1 2578 47 0 0 chr1 197014008 197014304 -85179360 + AluY SINE Alu 1 296 -15 2256 110 0 0 chr1 197014316 197014607 -85179057 + AluSg SINE Alu 1 291 -19 2490 103 11 24 chr1 197014964 197015344 -85178320 - THE1C LTR MaLR 0 375 1 1790 163 3 13 chr1 197015457 197015764 -85177900 + AluJb SINE Alu 7 310 -2 1071 154 0 0 chr1 197015810 197015966 -85177698 + AluSg/x SINE Alu 133 288 -21 590 217 16 31 chr1 197016271 197016400 -85177264 + FLAM_A SINE Alu 1 127 -6 603 117 0 0 chr1 197016687 197016781 -85176883 + (GA)n Simple_repeat Simple_repeat 1 94 0 1917 158 7 3 chr1 197017246 197017537 -85176127 + AluJb SINE Alu 1 292 -20 1041 161 25 0 chr1 197017548 197017709 -85175955 + AluJb SINE Alu 123 287 -25 1793 116 0 0 chr1 197017717 197017958 -85175706 + AluSg SINE Alu 1 241 -69 189 0 0 0 chr1 197017966 197017987 -85175677 + (TAGA)n Simple_repeat Simple_repeat 2 22 0 2196 116 3 0 chr1 197018269 197018561 -85175103 - AluSx SINE Alu -19 293 1 1724 137 46 21 chr1 197018592 197018877 -85174787 - AluSx SINE Alu -20 292 1 246 287 119 0 chr1 197018878 197019021 -85174643 + MIR SINE MIR 97 256 -6 1750 111 57 86 chr1 197019835 197020221 -85173443 + THE1C LTR MaLR 1 375 0 292 311 0 67 chr1 197020221 197020271 -85173393 - MIR SINE MIR -129 133 81 1864 179 34 11 chr1 197020271 197020628 -85173036 + MLT1A1 LTR MaLR 1 365 0 292 311 0 67 chr1 197020628 197020696 -85172968 - MIR SINE MIR -181 81 23 375 346 135 10 chr1 197021132 197021340 -85172324 + MIR SINE MIR 23 256 -6 2482 70 0 7 chr1 197021354 197021655 -85172009 - AluY SINE Alu -12 299 1 1596 132 119 4 chr1 197021767 197022048 -85171616 - AluSg1 SINE Alu 0 310 1 1274 216 108 7 chr1 197023180 197023449 -85170215 - AluJo SINE Alu -16 296 1 2361 83 0 7 chr1 197023683 197023985 -85169679 - AluSg SINE Alu -10 300 1 2242 91 10 3 chr1 197024127 197024423 -85169241 - AluSg SINE Alu -10 300 3 388 232 18 45 chr1 197024950 197025062 -85168602 - MIR3 SINE MIR -48 160 52 225 0 0 0 chr1 197025195 197025220 -85168444 + (T)n Simple_repeat Simple_repeat 1 25 0 2211 100 7 0 chr1 197028852 197029141 -85164523 - AluSp SINE Alu -22 291 1 377 207 97 79 chr1 197029304 197029542 -85164122 + L1MC5 LINE L1 7452 7699 -262 2196 109 6 16 chr1 197029542 197029717 -85163947 - AluSq SINE Alu -5 308 136 2233 114 3 0 chr1 197029717 197030014 -85163650 - AluSg SINE Alu -12 298 1 2196 109 6 16 chr1 197030014 197030149 -85163515 - AluSq SINE Alu -177 136 1 377 207 97 79 chr1 197030149 197030239 -85163425 + L1MC5 LINE L1 7699 7786 -175 275 160 40 80 chr1 197030242 197030317 -85163347 + L1MC5 LINE L1 7827 7898 -63 1668 158 100 4 chr1 197030426 197030705 -85162959 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr1 197030768 197030812 -85162852 + AT_rich Low_complexity Low_complexity 1 44 0 742 161 0 44 chr1 197030966 197031103 -85162561 + FLAM_C SINE Alu 1 131 -2 211 114 0 29 chr1 197031138 197031173 -85162491 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 267 133 0 0 chr1 197031173 197031218 -85162446 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 1748 175 18 7 chr1 197031218 197031503 -85162161 - AluJo SINE Alu -24 288 1 228 304 101 0 chr1 197031507 197031576 -85162088 - L2 LINE L2 -228 3044 2969 2207 140 0 0 chr1 197032109 197032416 -85161248 - AluSx SINE Alu -5 307 1 2065 105 4 0 chr1 197032478 197032754 -85160910 - AluSp SINE Alu -13 300 24 246 215 89 59 chr1 197033058 197033193 -85160471 + MER112 DNA MER1_type 74 212 -48 2131 116 10 3 chr1 197033447 197033740 -85159924 - AluSx SINE Alu -17 295 1 468 307 108 6 chr1 197033748 197033924 -85159740 + MIR SINE MIR 28 221 -41 491 241 73 22 chr1 197035569 197035706 -85157958 + MIR SINE MIR 1 144 -118 750 133 23 8 chr1 197035706 197035834 -85157830 + LTR19A LTR ERV1 357 486 0 21 57 0 0 chr1 197035859 197035894 -85157770 + AT_rich Low_complexity Low_complexity 1 35 0 247 247 91 0 chr1 197035918 197035995 -85157669 + MIR SINE MIR 179 262 0 1437 167 9 0 chr1 197036043 197036271 -85157393 - AluJb SINE Alu -82 230 1 2515 63 0 0 chr1 197036301 197036601 -85157063 + AluY SINE Alu 1 300 -11 2036 134 7 0 chr1 197036628 197036926 -85156738 - AluSp SINE Alu -12 301 2 2103 125 34 0 chr1 197037425 197037720 -85155944 - AluSx SINE Alu -7 305 1 1373 194 114 46 chr1 197038237 197038369 -85155295 - Charlie4a DNA MER1_type -1476 485 363 2177 114 3 7 chr1 197038369 197038667 -85154997 + AluSx SINE Alu 1 297 -15 1373 194 114 46 chr1 197038667 197038973 -85154691 - Charlie4a DNA MER1_type -1598 363 17 257 159 0 0 chr1 197039160 197039204 -85154460 - AluSx SINE Alu -7 295 252 1597 96 5 10 chr1 197039204 197039412 -85154252 - AluSx SINE Alu -105 207 1 233 293 61 12 chr1 197039414 197039496 -85154168 + L2 LINE L2 3179 3264 -8 27 49 0 0 chr1 197039702 197039743 -85153921 + AT_rich Low_complexity Low_complexity 1 41 0 2231 99 0 0 chr1 197039744 197040037 -85153627 - AluSg SINE Alu -17 293 1 1219 148 0 36 chr1 197040040 197040236 -85153428 - AluJo SINE Alu -16 296 108 2756 186 77 40 chr1 197090247 197090966 -85102698 - L1ME1 LINE L1 -84 6082 5294 2287 95 7 0 chr1 197090966 197091260 -85102404 - AluSc SINE Alu -13 296 1 2756 186 77 40 chr1 197091260 197091793 -85101871 - L1ME1 LINE L1 -872 5294 4782 489 265 118 28 chr1 197092205 197092377 -85101287 - MLT1J LTR MaLR -277 234 38 1422 229 23 50 chr1 197092377 197092761 -85100903 - MLT1A2 LTR MaLR 0 374 1 489 265 118 28 chr1 197092761 197092799 -85100865 - MLT1J LTR MaLR -473 38 5 2147 116 3 16 chr1 197093156 197093466 -85100198 + AluSx SINE Alu 1 306 -6 234 271 232 46 chr1 197093664 197093815 -85099849 + MIR3 SINE MIR 30 208 0 286 200 93 0 chr1 197093931 197094006 -85099658 - MLT1G LTR MaLR -26 564 483 1734 184 27 7 chr1 197094006 197094299 -85099365 + AluJb SINE Alu 1 299 -13 922 164 9 103 chr1 197094304 197094518 -85099146 + AluJo SINE Alu 87 280 -32 2394 85 7 0 chr1 197094518 197094823 -85098841 - AluSp SINE Alu -6 307 1 626 276 65 0 chr1 197094832 197095002 -85098662 - MLT1G LTR MaLR -217 373 193 34 55 0 0 chr1 197095022 197095077 -85098587 + AT_rich Low_complexity Low_complexity 1 55 0 1881 150 20 13 chr1 197095077 197095377 -85098287 + AluJo SINE Alu 1 302 -10 474 246 227 30 chr1 197095460 197095663 -85098001 - MIR SINE MIR -6 256 14 2114 142 8 50 chr1 197095663 197096043 -85097621 - THE1B LTR MaLR 0 364 1 2025 138 2 79 chr1 197096048 197096425 -85097239 + MLT1B LTR MaLR 1 344 -46 2271 99 0 7 chr1 197096425 197096728 -85096936 - AluSg SINE Alu -9 301 1 2025 138 2 79 chr1 197096728 197096770 -85096894 + MLT1B LTR MaLR 344 388 -2 732 267 65 49 chr1 197098257 197098397 -85095267 + MIR SINE MIR 12 159 -103 1380 193 104 0 chr1 197098397 197098667 -85094997 + AluJo SINE Alu 1 298 -14 732 267 65 49 chr1 197098667 197098773 -85094891 + MIR SINE MIR 159 262 0 2305 101 13 0 chr1 197099106 197099414 -85094250 + AluSx SINE Alu 1 312 0 2291 117 0 0 chr1 197099612 197099912 -85093752 + AluSc SINE Alu 1 300 -9 707 258 62 107 chr1 197100304 197100589 -85093075 - L2 LINE L2 -91 3222 2977 2326 40 57 24 chr1 197100589 197100885 -85092779 + AluY SINE Alu 1 306 -5 707 258 62 107 chr1 197100885 197101085 -85092579 - L2 LINE L2 -336 2977 2770 811 152 117 6 chr1 197101378 197101549 -85092115 - AluSc SINE Alu 0 309 120 300 308 80 40 chr1 197101750 197102298 -85091366 - L1M4 LINE L1 -1458 4688 4109 2354 105 0 0 chr1 197102298 197102592 -85091072 + AluSg SINE Alu 1 294 -16 300 308 80 40 chr1 197102592 197102690 -85090974 - L1M4 LINE L1 -2037 4109 4016 263 157 0 0 chr1 197102752 197102803 -85090861 + MADE1 DNA Mariner 29 79 -1 778 170 0 22 chr1 197102900 197103035 -85090629 - FLAM_C SINE Alu -1 132 1 910 224 0 0 chr1 197103059 197103220 -85090444 - FAM SINE Alu -13 162 2 23 33 0 0 chr1 197103233 197103263 -85090401 + AT_rich Low_complexity Low_complexity 1 30 0 280 341 41 80 chr1 197103492 197103942 -85089722 + L2 LINE L2 2724 3214 -58 443 318 68 0 chr1 197104261 197104409 -85089255 - L2 LINE L2 0 3272 3115 1908 54 4 0 chr1 197104490 197104732 -85088932 + L1PA5 LINE L1 5911 6153 -1 1691 153 7 24 chr1 197104966 197105253 -85088411 + AluJo SINE Alu 1 282 -30 414 0 0 0 chr1 197105259 197105305 -85088359 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1884 170 7 0 chr1 197105354 197105654 -85088010 - AluJb SINE Alu -10 302 1 599 224 0 17 chr1 197105710 197105826 -85087838 - FLAM_A SINE Alu -18 115 2 1631 177 42 7 chr1 197105833 197106121 -85087543 - AluJb SINE Alu -13 299 2 530 233 72 14 chr1 197106149 197106372 -85087292 - L1MC5 LINE L1 -60 7901 7666 22 0 0 0 chr1 197107114 197107136 -85086528 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 197107448 197107477 -85086187 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr1 197107488 197107520 -85086144 + (T)n Simple_repeat Simple_repeat 1 32 0 1523 224 21 13 chr1 197107808 197108197 -85085467 - L1MC4 LINE L1 -413 7629 7238 * 1598 205 37 11 chr1 197108192 197108575 -85085089 - L1MC4 LINE L1 -808 7081 6581 609 80 0 0 chr1 197108575 197108663 -85085001 + (CATA)n Simple_repeat Simple_repeat 4 91 0 1598 205 37 11 chr1 197108663 197108726 -85084938 - L1MC4 LINE L1 -1308 6581 6521 935 211 22 5 chr1 197109043 197109228 -85084436 + MER5A DNA MER1_type 1 188 -1 2315 101 7 0 chr1 197109585 197109892 -85083772 - AluSx SINE Alu -3 309 1 1462 202 3 17 chr1 197110010 197110297 -85083367 + AluJb SINE Alu 1 283 -29 211 231 0 0 chr1 197110301 197110340 -85083324 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 2297 110 3 0 chr1 197111205 197111515 -85082149 + AluSq SINE Alu 1 311 -2 677 226 0 22 chr1 197111689 197111826 -85081838 + AluJo SINE Alu 2 135 -177 1559 172 41 21 chr1 197111826 197112116 -85081548 + AluJb SINE Alu 1 296 -16 2323 104 3 0 chr1 197112477 197112784 -85080880 - AluSx SINE Alu -4 308 1 2251 110 0 3 chr1 197112792 197113091 -85080573 - AluSq SINE Alu -15 298 1 21 0 0 0 chr1 197113120 197113141 -85080523 + AT_rich Low_complexity Low_complexity 1 21 0 2067 86 3 58 chr1 197113187 197113513 -85080151 - AluSg SINE Alu 0 313 4 2051 130 40 7 chr1 197114779 197115080 -85078584 + AluSx SINE Alu 1 311 -1 1840 157 0 43 chr1 197115752 197116083 -85077581 - AluJo SINE Alu 0 318 1 348 24 0 0 chr1 197117185 197117226 -85076438 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr1 197117381 197117402 -85076262 + AT_rich Low_complexity Low_complexity 1 21 0 237 310 60 50 chr1 197117402 197117502 -85076162 + L2 LINE L2 3154 3254 -18 1151 202 48 20 chr1 197117969 197118221 -85075443 + MIR SINE MIR 1 259 -3 191 329 164 0 chr1 197118419 197118492 -85075172 + L2 LINE L2 3156 3240 -32 568 245 169 65 chr1 197118562 197118677 -85074987 + L2 LINE L2 2800 2902 -411 501 193 228 0 chr1 197118677 197118822 -85074842 + MER45A DNA AcHobo 1 178 0 568 245 169 65 chr1 197118822 197119059 -85074605 + L2 LINE L2 2902 3210 -103 2234 87 3 0 chr1 197119059 197119347 -85074317 + AluSg SINE Alu 1 289 -21 568 245 169 65 chr1 197119347 197119463 -85074201 + L2 LINE L2 3210 3313 0 2146 117 7 19 chr1 197119494 197119801 -85073863 + AluSx SINE Alu 1 303 -9 1929 162 23 7 chr1 197119867 197120170 -85073494 + AluJb SINE Alu 1 308 -4 708 192 8 0 chr1 197121864 197121989 -85071675 + FLAM_A SINE Alu 1 126 -7 2384 93 3 0 chr1 197122124 197122424 -85071240 + AluSq SINE Alu 1 301 -12 438 204 0 0 chr1 197122424 197122517 -85071147 + (TATG)n Simple_repeat Simple_repeat 4 96 0 231 257 0 43 chr1 197122632 197122702 -85070962 - MIR SINE MIR -150 112 46 1026 71 0 104 chr1 197122747 197122901 -85070763 - AluSq/x SINE Alu -175 138 1 2189 125 0 10 chr1 197122913 197123225 -85070439 - AluSx SINE Alu -3 309 1 1380 121 4 48 chr1 197123630 197123744 -85069920 + L1MA2 LINE L1 6043 6160 -144 1864 126 48 10 chr1 197123744 197124038 -85069626 + AluJo SINE Alu 1 305 -7 1380 121 4 48 chr1 197124038 197124195 -85069469 + L1MA2 LINE L1 6160 6302 -2 217 264 28 0 chr1 197124279 197124351 -85069313 - L2 LINE L2 -373 2940 2867 913 326 115 19 chr1 197124635 197125211 -85068453 - L2 LINE L2 -467 2847 2217 432 186 310 14 chr1 197126775 197126920 -85066744 + MIR SINE MIR 2 189 -73 1894 145 0 36 chr1 197127725 197128029 -85065635 + AluJo SINE Alu 1 293 -19 1878 178 3 0 chr1 197128091 197128395 -85065269 - AluJb SINE Alu -7 305 1 755 141 8 8 chr1 197128420 197128541 -85065123 + AluSx SINE Alu 35 155 -157 1977 41 11 11 chr1 197129261 197129528 -85064136 + LTR22A LTR ERVK 1 267 -191 228 271 84 65 chr1 197131116 197131223 -85062441 - L2 LINE L2 -8 3264 3156 849 133 0 22 chr1 197131305 197131440 -85062224 + FLAM_C SINE Alu 1 132 -1 25 0 0 0 chr1 197131553 197131578 -85062086 + AT_rich Low_complexity Low_complexity 1 25 0 473 276 24 8 chr1 197131580 197131703 -85061961 - MIR SINE MIR -29 233 109 823 162 26 13 chr1 197131703 197131857 -85061807 - FRAM SINE Alu -10 166 11 2262 112 0 3 chr1 197132141 197132454 -85061210 - AluSx SINE Alu 0 312 1 23 33 0 0 chr1 197132478 197132508 -85061156 + AT_rich Low_complexity Low_complexity 1 30 0 928 207 0 0 chr1 197132642 197132821 -85060843 + MER58A DNA MER1_type 45 223 -1 751 173 0 23 chr1 197133088 197133221 -85060443 - FLAM_A SINE Alu -3 130 1 213 39 0 0 chr1 197133229 197133255 -85060409 + (T)n Simple_repeat Simple_repeat 1 26 0 301 300 215 5 chr1 197134270 197134470 -85059194 + MIR SINE MIR 18 259 -3 651 161 9 2 chr1 197136026 197136154 -85057510 + L1MB7 LINE L1 6047 6166 0 214 235 15 29 chr1 197136378 197136446 -85057218 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2291 113 0 3 chr1 197137068 197137379 -85056285 + AluSx SINE Alu 1 310 -2 2172 91 0 60 chr1 197137380 197137698 -85055966 + AluY SINE Alu 1 299 -12 2269 108 0 3 chr1 197138321 197138618 -85055046 + AluSx SINE Alu 1 296 -16 1004 259 0 0 chr1 197139159 197139383 -85054281 + MER58A DNA MER1_type 1 224 0 1828 163 0 49 chr1 197142660 197142836 -85050828 - AluJo SINE Alu -3 309 155 2076 133 10 26 chr1 197142836 197143144 -85050520 - AluSx SINE Alu -9 303 1 1828 163 0 49 chr1 197143144 197143292 -85050372 - AluJo SINE Alu -157 155 1 245 50 0 25 chr1 197144025 197144065 -85049599 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 368 254 319 6 chr1 197145336 197145505 -85048159 + MIR SINE MIR 33 254 -8 442 301 19 26 chr1 197146048 197146204 -85047460 - MIR SINE MIR 0 262 108 229 225 78 78 chr1 197146221 197146350 -85047314 + L1ME4a LINE L1 5634 5762 -359 22 70 0 0 chr1 197146402 197146445 -85047219 + AT_rich Low_complexity Low_complexity 1 43 0 322 274 29 0 chr1 197146534 197146636 -85047028 + L1ME4a LINE L1 5948 6052 -69 32 81 0 0 chr1 197146756 197146830 -85046834 + AT_rich Low_complexity Low_complexity 1 74 0 2280 106 0 3 chr1 197148081 197148384 -85045280 + AluSx SINE Alu 6 307 -5 2170 128 7 0 chr1 197148886 197149190 -85044474 - AluSx SINE Alu -6 306 1 213 208 0 38 chr1 197149394 197149447 -85044217 + L3 LINE CR1 1313 1363 -214 2556 58 0 7 chr1 197149485 197149795 -85043869 - AluY SINE Alu -3 308 1 515 315 116 3 chr1 197150607 197150899 -85042765 - L2 LINE L2 -5 3308 2984 290 333 50 50 chr1 197151243 197151384 -85042280 + MIR SINE MIR 19 159 -49 357 289 49 35 chr1 197153089 197153231 -85040433 - MIR SINE MIR -47 215 72 1551 149 0 24 chr1 197154462 197154711 -85038953 + AluJo SINE Alu 61 303 -9 29 0 0 0 chr1 197155632 197155661 -85038003 + AT_rich Low_complexity Low_complexity 1 29 0 220 259 72 86 chr1 197156118 197156257 -85037407 - L2 LINE L2 -463 2851 2715 919 117 0 0 chr1 197157059 197157187 -85036477 - AluJb SINE Alu 0 312 185 440 302 124 22 chr1 197157346 197157571 -85036093 - MIR SINE MIR -13 249 2 1710 84 21 4 chr1 197157647 197157884 -85035780 - L1PA7 LINE L1 -3 6151 5911 368 312 40 0 chr1 197159128 197159253 -85034411 + MIR SINE MIR 85 214 -48 189 0 0 0 chr1 197159563 197159584 -85034080 + (A)n Simple_repeat Simple_repeat 1 21 0 1203 63 0 17 chr1 197159584 197159759 -85033905 - L1PA8A LINE L1 -28 6103 5932 183 163 23 23 chr1 197159794 197159837 -85033827 - L2 LINE L2 0 3313 3271 2244 123 0 3 chr1 197159964 197160273 -85033391 + AluSx SINE Alu 1 308 -4 1672 145 7 47 chr1 197160617 197160914 -85032750 + AluJb SINE Alu 14 298 -14 372 282 121 8 chr1 197160930 197161054 -85032610 - MIR SINE MIR -122 140 3 252 286 125 21 chr1 197161228 197161420 -85032244 - MLT1J LTR MaLR 0 511 300 2119 109 0 38 chr1 197161440 197161753 -85031911 - AluSg SINE Alu -8 302 2 332 235 39 13 chr1 197161917 197162045 -85031619 - MLT1L LTR MaLR -380 131 1 2246 89 0 0 chr1 197162678 197162970 -85030694 - AluSc SINE Alu -17 292 1 2388 82 0 0 chr1 197163311 197163614 -85030050 - AluY SINE Alu -8 303 1 432 254 108 0 chr1 197163732 197163862 -85029802 + MIR SINE MIR 94 237 -25 37 39 0 0 chr1 197164513 197164564 -85029100 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr1 197167277 197167299 -85026365 + AT_rich Low_complexity Low_complexity 1 22 0 2189 105 0 17 chr1 197167662 197167956 -85025708 + AluSq SINE Alu 1 289 -24 1826 164 17 0 chr1 197171665 197171963 -85021701 - AluJb SINE Alu -9 303 1 543 200 9 0 chr1 197172029 197172134 -85021530 + U6 snRNA snRNA 1 106 -1 197 350 68 26 chr1 197172185 197172302 -85021362 - L2 LINE L2 -1355 1959 1838 838 173 189 90 chr1 197172331 197172718 -85020946 + LTR37B LTR ERV1 5 429 -39 878 305 66 26 chr1 197172722 197173182 -85020482 - L2 LINE L2 -258 3055 2576 994 274 101 34 chr1 197173183 197173690 -85019974 - MER34 LTR ERV1 -1 541 1 469 308 88 0 chr1 197173690 197173849 -85019815 - L2 LINE L2 -735 2579 2407 228 247 41 0 chr1 197173926 197173999 -85019665 - L1ME2 LINE L1 -19 6145 6070 345 261 62 25 chr1 197174039 197174200 -85019464 - L1ME3A LINE L1 -17 6153 5987 369 186 8 46 chr1 197174230 197174332 -85019332 - L1ME3A LINE L1 -246 5923 5818 296 267 12 0 chr1 197175371 197175457 -85018207 + (CGGGG)n Simple_repeat Simple_repeat 2 88 0 247 267 16 0 chr1 197176162 197176250 -85017414 + MIR SINE MIR 79 170 -38 3059 166 60 57 chr1 197176826 197177254 -85016410 - L1MB7 LINE L1 -20 6164 5730 2295 74 0 14 chr1 197177254 197177550 -85016114 - AluSx SINE Alu -20 292 1 3059 166 60 57 chr1 197177550 197177965 -85015699 - L1MB7 LINE L1 -454 5730 5318 2214 113 0 0 chr1 197178623 197178923 -85014741 - AluSp SINE Alu -13 300 1 21 57 0 0 chr1 197180463 197180498 -85013166 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr1 197180606 197180631 -85013033 + (TGG)n Simple_repeat Simple_repeat 1 25 0 263 255 85 21 chr1 197180698 197180792 -85012872 - L2 LINE L2 -8 3305 3206 660 69 49 0 chr1 197181396 197181498 -85012166 - L1MA1 LINE L1 0 6302 6196 407 355 8 0 chr1 197181986 197182107 -85011557 + MIR SINE MIR 20 141 -121 849 206 33 16 chr1 197182805 197182989 -85010675 + MER58A DNA MER1_type 37 223 -1 410 244 128 41 chr1 197183060 197183232 -85010432 + MIR SINE MIR 36 222 -40 300 294 271 22 chr1 197183579 197184043 -85009621 + L2 LINE L2 2731 3311 -2 263 298 48 29 chr1 197184420 197184524 -85009140 - MER5B DNA MER1_type -53 125 20 2459 66 10 3 chr1 197184868 197185170 -85008494 + AluSx SINE Alu 1 304 -8 928 148 56 12 chr1 197186470 197186632 -85007032 + FRAM SINE Alu 1 168 -8 1460 146 5 5 chr1 197187326 197187545 -85006119 + AluSq SINE Alu 1 219 -94 693 112 0 10 chr1 197187548 197187646 -85006018 + AluSg/x SINE Alu 189 285 -25 249 258 0 0 chr1 197187650 197187712 -85005952 + L1MC4a LINE L1 5575 5636 -2172 459 238 219 32 chr1 197187758 197188137 -85005527 + L1MC4a LINE L1 5720 6169 -1639 1377 221 39 17 chr1 197188163 197188520 -85005144 - MLT1A1 LTR MaLR 0 365 1 478 333 99 49 chr1 197188627 197189180 -85004484 + L2 LINE L2 2172 2752 -562 2174 109 0 38 chr1 197190433 197190753 -85002911 - AluSx SINE Alu -4 308 1 301 269 99 0 chr1 197190761 197190902 -85002762 - L1ME LINE L1 -365 5805 5651 2144 116 13 0 chr1 197191421 197191722 -85001942 + AluSp SINE Alu 2 306 -7 189 163 0 23 chr1 197191903 197191946 -85001718 - MIR SINE MIR -120 142 101 1708 160 13 53 chr1 197192149 197192523 -85001141 - L1MA9 LINE L1 -5 6307 5949 2056 108 35 3 chr1 197192562 197192850 -85000814 - AluSx SINE Alu -15 297 1 2250 116 0 0 chr1 197193348 197193641 -85000023 + AluSg SINE Alu 1 293 -17 332 306 159 0 chr1 197194376 197194533 -84999131 - L1MC4a LINE L1 -1658 6150 5969 541 261 70 59 chr1 197194557 197194784 -84998880 - L1MC4a LINE L1 -1925 5883 5651 2024 128 0 45 chr1 197194784 197195097 -84998567 - AluSx SINE Alu -10 302 4 541 261 70 59 chr1 197195097 197195141 -84998523 - L1MC4a LINE L1 -2157 5651 5609 1761 104 0 0 chr1 197196012 197196243 -84997421 - AluSp SINE Alu -12 301 71 21 0 0 0 chr1 197196253 197196274 -84997390 + AT_rich Low_complexity Low_complexity 1 21 0 2506 258 246 12 chr1 197196384 197197461 -84996203 + L2 LINE L2 191 1519 -1795 576 158 158 12 chr1 197197461 197197626 -84996038 + Charlie5 DNA MER1_type 6 194 -2418 1008 167 92 8 chr1 197197631 197197882 -84995782 + Charlie5 DNA MER1_type 2353 2624 0 211 176 162 44 chr1 197197882 197197950 -84995714 + L2 LINE L2 1507 1582 -1732 817 41 0 0 chr1 197197987 197198085 -84995579 - HY3 scRNA scRNA -3 98 1 1857 240 119 14 chr1 197198086 197198724 -84994940 + L2 LINE L2 1567 2271 -1043 673 240 0 26 chr1 197199633 197199644 -84994020 - MER21B LTR ERV1 -384 479 469 1969 129 28 3 chr1 197199644 197199930 -84993734 + AluSx SINE Alu 1 293 -19 673 240 0 26 chr1 197199930 197200072 -84993592 - MER21B LTR ERV1 -394 469 330 2805 153 24 8 chr1 197200104 197200601 -84993063 - L1MB3 LINE L1 0 6183 5679 198 324 140 52 chr1 197200945 197201081 -84992583 - L2 LINE L2 0 3272 3125 23 54 0 0 chr1 197201170 197201207 -84992457 + AT_rich Low_complexity Low_complexity 1 37 0 212 200 0 0 chr1 197201266 197201306 -84992358 - MIR SINE MIR -120 142 103 2097 68 0 8 chr1 197201337 197201600 -84992064 - AluY SINE Alu -7 304 44 342 156 50 6 chr1 197201771 197201931 -84991733 + (TA)n Simple_repeat Simple_repeat 1 167 0 254 133 52 22 chr1 197201943 197202078 -84991586 + (TA)n Simple_repeat Simple_repeat 2 140 0 235 148 39 55 chr1 197202181 197202363 -84991301 + (TA)n Simple_repeat Simple_repeat 2 180 0 346 122 56 38 chr1 197202377 197202822 -84990842 + (TA)n Simple_repeat Simple_repeat 1 452 0 1779 139 3 30 chr1 197202872 197203174 -84990490 - AluJb SINE Alu -14 298 5 319 338 107 29 chr1 197203178 197203459 -84990205 + L1MC/D LINE L1 4684 4986 -1160 1741 172 16 3 chr1 197203528 197203836 -84989828 - AluJb SINE Alu 0 312 1 781 287 105 6 chr1 197203890 197204221 -84989443 + L1MC/D LINE L1 5378 5742 -452 28 0 0 0 chr1 197204287 197204315 -84989349 + AT_rich Low_complexity Low_complexity 1 28 0 419 52 17 0 chr1 197205148 197205206 -84988458 + (CA)n Simple_repeat Simple_repeat 2 60 0 479 0 56 0 chr1 197205504 197205575 -84988089 + (CA)n Simple_repeat Simple_repeat 2 76 0 2749 161 16 26 chr1 197205667 197206159 -84987505 - MER45B DNA AcHobo 0 1040 554 1746 209 120 5 chr1 197206164 197206538 -84987126 - MER45B DNA AcHobo -606 434 18 1545 235 84 15 chr1 197206726 197207202 -84986462 - L2 LINE L2 0 3313 2805 2471 69 0 0 chr1 197207797 197208100 -84985564 - AluY SINE Alu -2 309 7 242 331 41 0 chr1 197209211 197209332 -84984332 + MER91A DNA MER1_type 3 128 -68 833 254 104 43 chr1 197209641 197210015 -84983649 - MLT1C LTR MaLR -65 402 6 221 190 103 17 chr1 197210374 197210432 -84983232 + L2 LINE L2 3210 3272 0 2257 104 0 16 chr1 197210749 197211056 -84982608 + AluSx SINE Alu 1 302 -10 2877 91 8 5 chr1 197212872 197213246 -84980418 - THE1C LTR MaLR 0 375 1 554 164 0 112 chr1 197213270 197213422 -84980242 + L2 LINE L2 3179 3313 0 1671 140 64 8 chr1 197213858 197214123 -84979541 - AluJb SINE Alu -32 280 1 616 260 125 34 chr1 197214753 197214961 -84978703 + MIR SINE MIR 26 252 -10 195 275 75 25 chr1 197215352 197215432 -84978232 + L2 LINE L2 3028 3111 -161 188 0 74 0 chr1 197217154 197217181 -84976483 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 5196 142 13 4 chr1 197217193 197217428 -84976236 - L1MA2 LINE L1 0 6304 6072 1914 133 50 0 chr1 197217428 197217706 -84975958 - AluSx SINE Alu -16 296 5 5196 142 13 4 chr1 197217706 197219271 -84974393 - L1MA2 LINE L1 -232 6072 4407 10430 157 18 67 chr1 197221356 197221999 -84971665 - L1MA2 LINE L1 -1726 4420 3747 2510 54 0 0 chr1 197221999 197222293 -84971371 - AluY SINE Alu -13 298 5 10430 157 18 67 chr1 197222293 197222854 -84970810 - L1MA2 LINE L1 -2399 3747 3160 2179 135 3 0 chr1 197222854 197223165 -84970499 - AluSx SINE Alu 0 312 1 10430 157 18 67 chr1 197223165 197223979 -84969685 - L1MA2 LINE L1 -2986 3160 2436 617 121 12 0 chr1 197223979 197224062 -84969602 - AluY SINE Alu -20 291 208 10430 157 18 67 chr1 197224062 197224233 -84969431 - L1MA2 LINE L1 -3710 2436 2258 330 338 190 20 chr1 197224339 197224733 -84968931 + L2 LINE L2 2031 2491 -823 493 256 72 22 chr1 197224733 197224913 -84968751 + L2 LINE L2 2346 2534 -780 375 365 33 47 chr1 197225179 197225393 -84968271 - L2 LINE L2 -96 3176 2966 397 286 56 3 chr1 197225499 197225658 -84968006 - HAL1b LINE L1 -1 6120 1193 186 366 0 0 chr1 197225664 197225735 -84967929 + L2 LINE L2 2687 2757 -557 308 293 47 19 chr1 197226875 197226981 -84966683 - L2 LINE L2 -18 3254 3146 766 248 57 19 chr1 197227515 197227725 -84965939 - MIR SINE MIR -5 257 40 227 233 97 10 chr1 197228257 197228360 -84965304 + L1MB7 LINE L1 4165 4276 -1870 234 214 11 129 chr1 197228363 197228541 -84965123 + L1MB7 LINE L1 4389 4545 -1601 1108 201 0 0 chr1 197228564 197228763 -84964901 - MLT1B LTR MaLR 0 390 192 2170 230 112 9 chr1 197228850 197229385 -84964279 + MLT1E LTR MaLR 4 593 0 1744 173 6 13 chr1 197229409 197229748 -84963916 + AluJb SINE Alu 1 312 0 595 224 241 6 chr1 197230840 197231010 -84962654 + MER63A DNA MER1_type 1 210 0 669 296 81 18 chr1 197231339 197231744 -84961920 - MLT1L LTR MaLR 0 615 135 4970 57 0 0 chr1 197232152 197232734 -84960930 - L1PA7 LINE L1 -1 6153 5572 5117 79 4 0 chr1 197232734 197233596 -84960068 + L1PA7 LINE L1 4693 5556 -598 4937 159 51 14 chr1 197233618 197234891 -84958773 + L1MB7 LINE L1 4851 6168 -16 236 95 24 0 chr1 197234891 197234899 -84958765 + (TA)n Simple_repeat Simple_repeat 2 8 -36 2130 102 0 27 chr1 197234899 197235193 -84958471 + AluSq SINE Alu 1 286 -27 236 95 24 0 chr1 197235193 197235226 -84958438 + (TA)n Simple_repeat Simple_repeat 8 44 0 239 119 0 0 chr1 197235226 197235268 -84958396 - LTR66 LTR ERVL -171 439 398 271 191 13 0 chr1 197235270 197235344 -84958320 - L1MC4 LINE L1 -1339 6983 2006 513 251 0 105 chr1 197235500 197235691 -84957973 + MER5B DNA MER1_type 1 171 -7 686 207 55 12 chr1 197235785 197235949 -84957715 - L1ME1 LINE L1 -5 6161 5991 396 0 0 0 chr1 197236738 197236782 -84956882 + (CA)n Simple_repeat Simple_repeat 1 44 0 529 273 23 41 chr1 197237318 197237490 -84956174 - MLT1L LTR MaLR -90 525 357 941 187 0 18 chr1 197237518 197237707 -84955957 - AluJ SINE Alu 0 312 127 891 154 8 0 chr1 197237754 197237884 -84955780 - AluJ SINE Alu -171 131 1 528 340 74 14 chr1 197237887 197238172 -84955492 - MLT1L LTR MaLR -312 303 2 2019 144 10 0 chr1 197238814 197239113 -84954551 + AluSx SINE Alu 1 302 -10 2246 117 0 0 chr1 197239587 197239895 -84953769 + AluSx SINE Alu 1 308 -4 479 232 149 23 chr1 197240100 197240276 -84953388 + MLT1J LTR MaLR 1 160 -290 5539 196 34 23 chr1 197240293 197241530 -84952134 + L1MC4 LINE L1 6793 8042 0 225 132 171 40 chr1 197241649 197241725 -84951939 + MLT1J LTR MaLR 375 460 -51 553 281 146 0 chr1 197242250 197242442 -84951222 - MIR SINE MIR -10 252 33 2447 89 0 3 chr1 197244129 197244442 -84949222 + AluSp SINE Alu 1 312 -1 233 300 0 0 chr1 197245715 197245775 -84947889 + MIR SINE MIR 203 262 0 198 0 0 0 chr1 197247106 197247128 -84946536 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 541 286 100 14 chr1 197247142 197247362 -84946302 + MIR SINE MIR 5 243 -19 274 200 12 50 chr1 197247419 197247499 -84946165 - L2 LINE L2 -40 3232 3156 251 276 19 67 chr1 197247490 197247595 -84946069 - L2 LINE L2 -1041 2273 2174 * 216 0 0 0 chr1 197248431 197248455 -84945209 + (T)n Simple_repeat Simple_repeat 1 24 0 1955 176 0 6 chr1 197249705 197250017 -84943647 + AluJb SINE Alu 1 310 -2 546 317 54 21 chr1 197250355 197250595 -84943069 + MIR SINE MIR 2 249 -13 2029 136 7 0 chr1 197250805 197251100 -84942564 - AluSx SINE Alu -15 297 1 211 301 11 43 chr1 197252153 197252246 -84941418 + MIR SINE MIR 29 118 -144 958 225 41 41 chr1 197252250 197252494 -84941170 + MIR SINE MIR 2 245 -17 309 116 0 0 chr1 197253350 197253393 -84940271 - L2 LINE L2 -4 3268 3226 426 278 77 23 chr1 197253659 197253810 -84939854 + MIR SINE MIR 18 188 -74 40 67 0 0 chr1 197253857 197253932 -84939732 + AT_rich Low_complexity Low_complexity 1 75 0 809 128 64 0 chr1 197255320 197255445 -84938219 - MER5A DNA MER1_type -56 133 1 201 39 0 0 chr1 197255463 197255489 -84938175 + (TG)n Simple_repeat Simple_repeat 1 26 0 495 251 194 32 chr1 197256297 197256544 -84937120 - LTR33 LTR ERVL 0 521 235 398 289 81 7 chr1 197256571 197256720 -84936944 - LTR33 LTR ERVL -348 173 14 332 278 0 0 chr1 197256871 197256943 -84936721 - L2 LINE L2 0 3313 3242 2088 190 120 6 chr1 197257147 197257662 -84936002 - MER90 LTR ERV1 0 575 2 692 236 99 0 chr1 197259983 197260144 -84933520 - MER69A DNA AcHobo 0 177 1 1038 199 0 0 chr1 197260342 197260518 -84933146 + AluJb SINE Alu 129 304 -8 2535 72 3 0 chr1 197261100 197261404 -84932260 + AluSp SINE Alu 4 308 -5 836 221 96 19 chr1 197262376 197262600 -84931064 - MIR SINE MIR -13 249 9 2864 93 79 5 chr1 197262600 197263031 -84930633 - MER4C LTR ERV1 0 465 3 3655 173 51 48 chr1 197263084 197263912 -84929752 - MER21B LTR ERV1 -22 841 12 237 185 123 15 chr1 197265090 197265155 -84928509 + MIR3 SINE MIR 127 198 -10 324 318 117 0 chr1 197265562 197265716 -84927948 - MIR SINE MIR -44 218 47 186 219 0 0 chr1 197266795 197266836 -84926828 + MIR SINE MIR 75 115 -93 1869 159 3 3 chr1 197267037 197267394 -84926270 - AluSx SINE Alu 0 357 1 27 0 0 0 chr1 197268047 197268074 -84925590 + AT_rich Low_complexity Low_complexity 1 27 0 189 179 0 0 chr1 197268157 197268185 -84925479 + MIR SINE MIR 49 76 -186 * 1373 294 77 44 chr1 197268180 197268752 -84924912 + L2 LINE L2 2336 2926 -388 394 311 8 8 chr1 197268877 197268996 -84924668 + L2 LINE L2 3194 3312 -1 535 327 133 20 chr1 197268999 197269443 -84924221 + L3 LINE CR1 1081 1574 -3 468 256 33 25 chr1 197270475 197270596 -84923068 + MIR SINE MIR 8 129 -133 1054 213 14 14 chr1 197270774 197270985 -84922679 - MER58A DNA MER1_type -5 219 9 2291 105 0 3 chr1 197271066 197271379 -84922285 - AluSx SINE Alu 0 312 1 217 328 34 107 chr1 197271489 197271751 -84921913 - L2 LINE L2 -41 3231 2989 427 300 50 6 chr1 197272198 197272358 -84921306 - MIR SINE MIR -47 215 49 374 234 3 72 chr1 197274807 197275160 -84918504 + GA-rich Low_complexity Low_complexity 1 328 0 821 173 101 0 chr1 197275675 197275843 -84917821 - MER20 DNA MER1_type -2 217 33 1226 121 14 28 chr1 197276366 197276581 -84917083 - L1MA4 LINE L1 -1 6299 6088 8590 111 54 88 chr1 197276583 197278980 -84914684 - pTR5 LTR ERV1 0 8399 504 844 185 49 42 chr1 197278976 197279335 -84914329 - Harlequin LTR ERV1 -835 7564 842 * 23084 85 2 12 chr1 197279406 197282610 -84911054 - Harlequin LTR ERV1 -5227 3172 1 6888 139 33 147 chr1 197282613 197284527 -84909137 - pTR5 LTR ERV1 0 2438 743 7912 145 13 55 chr1 197284527 197284577 -84909087 - L1MA4 LINE L1 -208 7113 7062 2951 9 0 0 chr1 197284577 197284892 -84908772 - AluYb8 SINE Alu -3 315 1 7912 145 13 55 chr1 197284892 197286397 -84907267 - L1MA4 LINE L1 -259 7062 5683 2451 93 0 34 chr1 197286397 197286540 -84907124 + AluSx SINE Alu 1 147 -165 2411 103 0 0 chr1 197286540 197286842 -84906822 + AluSq SINE Alu 1 302 -11 2451 93 0 34 chr1 197286842 197287021 -84906643 + AluSx SINE Alu 147 312 0 7912 145 13 55 chr1 197287021 197287873 -84905791 - L1MA4 LINE L1 -1638 5683 4796 * 11078 185 30 35 chr1 197287844 197288110 -84905554 - L1MA4 LINE L1 -3709 3458 3192 2248 130 3 16 chr1 197288110 197288426 -84905238 - AluSx SINE Alu 0 312 1 11078 185 30 35 chr1 197288426 197291648 -84902016 - L1MA4 LINE L1 -3975 3192 2 326 198 52 95 chr1 197291653 197291769 -84901895 - MIR SINE MIR -59 203 93 21 0 0 0 chr1 197291769 197291790 -84901874 + AT_rich Low_complexity Low_complexity 1 21 0 191 160 0 100 chr1 197291938 197291988 -84901676 - MIR SINE MIR -146 116 72 625 293 32 11 chr1 197292006 197292194 -84901470 - MIR3 SINE MIR -12 196 5 195 138 0 0 chr1 197292195 197292224 -84901440 - MIR SINE MIR -142 66 38 265 333 65 0 chr1 197293515 197293623 -84900041 - L2 LINE L2 -4 3309 3195 227 361 41 25 chr1 197293685 197293807 -84899857 + L2 LINE L2 3148 3271 -1 198 65 43 22 chr1 197294460 197294506 -84899158 + A-rich Low_complexity Low_complexity 2 48 0 4274 84 0 4 chr1 197294535 197295091 -84898573 - MER41A LTR ERV1 0 554 1 2535 56 7 13 chr1 197295134 197295440 -84898224 - AluY SINE Alu -5 306 3 356 290 164 10 chr1 197295672 197295879 -84897785 - L2 LINE L2 -20 3293 3055 440 180 173 29 chr1 197295903 197296042 -84897622 - MLT1J LTR MaLR -32 479 321 396 258 81 0 chr1 197296112 197296236 -84897428 - MLT1J LTR MaLR -303 208 75 940 172 35 30 chr1 197296250 197296297 -84897367 - MER3 DNA MER1_type 0 209 164 1751 169 62 0 chr1 197296297 197296587 -84897077 - AluJb SINE Alu -4 308 1 940 172 35 30 chr1 197296587 197296742 -84896922 - MER3 DNA MER1_type -45 164 6 1898 295 116 54 chr1 197296771 197297613 -84896051 - L2 LINE L2 -328 2985 2026 1646 169 32 21 chr1 197297613 197297918 -84895746 + AluJb SINE Alu 1 308 0 1898 295 116 54 chr1 197297918 197298450 -84895214 - L2 LINE L2 -1287 2026 1528 212 320 107 39 chr1 197298459 197298562 -84895102 + MIR3 SINE MIR 88 197 -11 216 0 0 0 chr1 197299877 197299901 -84893763 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2333 84 0 3 chr1 197299903 197300189 -84893475 + AluSp SINE Alu 1 317 0 268 31 0 0 chr1 197300189 197300221 -84893443 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 321 264 33 28 chr1 197300284 197300406 -84893258 + CT-rich Low_complexity Low_complexity 3 213 0 709 181 20 16 chr1 197301026 197301238 -84892426 + CT-rich Low_complexity Low_complexity 1 212 0 300 257 139 14 chr1 197301238 197301382 -84892282 - HAL1 LINE L1 -1206 1301 1140 475 164 19 0 chr1 197301384 197301488 -84892176 + CT-rich Low_complexity Low_complexity 1 106 0 2228 113 0 0 chr1 197301595 197301904 -84891760 - AluSg SINE Alu -1 309 1 542 244 92 0 chr1 197302736 197302867 -84890797 + L2 LINE L2 3167 3309 -4 3391 126 55 0 chr1 197304412 197304937 -84888727 - MER41C LTR ERV1 0 554 1 432 271 95 14 chr1 197305083 197305273 -84888391 - MIR3 SINE MIR -46 216 13 539 223 9 9 chr1 197306182 197306294 -84887370 - L2 LINE L2 -4 3309 3198 274 236 67 160 chr1 197307133 197307358 -84886306 - MIR SINE MIR -6 256 53 351 0 0 0 chr1 197307422 197307461 -84886203 + (CA)n Simple_repeat Simple_repeat 2 40 0 200 284 11 74 chr1 197308098 197308193 -84885471 - MIR SINE MIR -56 206 118 684 342 82 11 chr1 197308828 197309208 -84884456 + L2 LINE L2 1802 2208 -1106 332 268 76 52 chr1 197309321 197309605 -84884059 - MLT1J1 LTR MaLR -118 393 15 378 289 110 91 chr1 197309627 197309778 -84883886 + L2 LINE L2 2239 2386 -928 2139 103 30 0 chr1 197309778 197310079 -84883585 + AluSg SINE Alu 1 310 0 378 289 110 91 chr1 197310079 197310608 -84883056 + L2 LINE L2 2386 2932 -382 538 279 55 25 chr1 197310662 197310863 -84882801 + L2 LINE L2 3102 3308 -5 242 263 88 25 chr1 197311092 197311172 -84882492 + L2 LINE L2 3193 3277 -36 1043 275 92 30 chr1 197312756 197312868 -84880796 + Tigger8 DNA MER2_type 96 200 -466 261 0 0 0 chr1 197312868 197312897 -84880767 + (TG)n Simple_repeat Simple_repeat 1 29 0 1043 275 92 30 chr1 197312897 197313210 -84880454 + Tigger8 DNA MER2_type 200 547 -119 218 210 81 32 chr1 197313778 197313840 -84879824 + L2 LINE L2 3230 3294 -19 7370 129 33 8 chr1 197314238 197315438 -84878226 - Tigger3b DNA MER2_type -1 1230 1 21 36 0 0 chr1 197316197 197316225 -84877439 + AT_rich Low_complexity Low_complexity 1 28 0 260 234 156 0 chr1 197317887 197317964 -84875700 + L2 LINE L2 3168 3256 -16 846 199 10 46 chr1 197317991 197318113 -84875551 - MER5A DNA MER1_type 0 189 75 2274 104 0 0 chr1 197318113 197318420 -84875244 - AluSg SINE Alu -3 307 1 846 199 10 46 chr1 197318420 197318493 -84875171 - MER5A DNA MER1_type -114 75 1 363 270 97 81 chr1 197318571 197318756 -84874908 + MIR SINE MIR 20 207 -55 219 88 0 0 chr1 197319009 197319043 -84874621 + (TG)n Simple_repeat Simple_repeat 2 35 0 1628 195 68 31 chr1 197320368 197320722 -84872942 - MLT1A2 LTR MaLR -7 367 1 2011 148 0 0 chr1 197320775 197321080 -84872584 + AluJb SINE Alu 1 305 -7 189 0 0 0 chr1 197322339 197322360 -84871304 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 448 275 37 0 chr1 197324029 197324138 -84869526 - L2 LINE L2 0 3272 3160 482 269 170 20 chr1 197324167 197324420 -84869244 - L2 LINE L2 0 3313 3023 1056 157 9 61 chr1 197324498 197324727 -84868937 - AluJo SINE Alu -15 297 81 709 168 34 0 chr1 197324934 197325053 -84868611 - FRAM SINE Alu -55 121 1 305 225 0 50 chr1 197325056 197325136 -84868528 - L1MC3 LINE L1 -1139 6646 6571 527 207 9 9 chr1 197325162 197325273 -84868391 - FLAM_A SINE Alu -31 111 1 296 270 52 0 chr1 197325444 197325538 -84868126 - MER5A DNA MER1_type 0 178 65 186 388 29 6 chr1 197326591 197326761 -84866903 - MER5B DNA MER1_type -4 174 1 1099 61 7 0 chr1 197327430 197327577 -84866087 + AluSp/q SINE Alu 161 308 -5 339 264 218 18 chr1 197328540 197328650 -84865014 + MIR3 SINE MIR 14 145 -63 180 111 0 0 chr1 197328750 197328777 -84864887 + (T)n Simple_repeat Simple_repeat 1 27 0 458 211 45 64 chr1 197329740 197329896 -84863768 + MER103 DNA DNA 8 160 -6 329 257 97 42 chr1 197329920 197330064 -84863600 + MER5A DNA MER1_type 2 153 -36 435 317 41 0 chr1 197330071 197330194 -84863470 - L2 LINE L2 -1 3271 3144 385 328 0 0 chr1 197330740 197330865 -84862799 + L2 LINE L2 1931 2055 -1259 631 283 96 0 chr1 197330871 197331058 -84862606 - MIR SINE MIR 0 262 58 335 276 224 8 chr1 197331315 197331449 -84862215 + L2 LINE L2 3105 3267 -5 592 194 41 100 chr1 197332092 197332164 -84861500 + MER3 DNA MER1_type 43 118 -91 1902 147 19 7 chr1 197332164 197332471 -84861193 + AluSx SINE Alu 1 311 -1 592 194 41 100 chr1 197332471 197332568 -84861096 + MER3 DNA MER1_type 118 202 -7 186 103 0 0 chr1 197332583 197332612 -84861052 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 197333053 197333075 -84860589 + AT_rich Low_complexity Low_complexity 1 22 0 338 41 0 20 chr1 197336282 197336331 -84857333 + (TTC)n Simple_repeat Simple_repeat 3 50 0 180 393 62 0 chr1 197336805 197336917 -84856747 - L2 LINE L2 0 3272 3154 * 210 250 0 0 chr1 197336892 197336940 -84856724 + L2 LINE L2 3225 3272 0 323 316 10 10 chr1 197337788 197337886 -84855778 - MIR3 SINE MIR -29 179 82 679 233 170 24 chr1 197338413 197338619 -84855045 - MIR SINE MIR 0 262 27 447 291 16 24 chr1 197339752 197339879 -84853785 - L2 LINE L2 -2 3270 3145 375 265 219 7 chr1 197340719 197340870 -84852794 + MIR SINE MIR 29 211 -51 206 263 18 0 chr1 197341414 197341471 -84852193 + MIR SINE MIR 184 241 -21 384 296 40 20 chr1 197341808 197341966 -84851698 - MER5A DNA MER1_type -15 163 1 199 237 34 17 chr1 197342468 197342527 -84851137 - L2 LINE L2 -77 3195 3136 256 278 187 20 chr1 197342940 197343239 -84850425 - L2 LINE L2 -411 2903 2555 387 313 83 16 chr1 197344070 197344262 -84849402 - MIR3 SINE MIR -2 206 2 989 235 82 7 chr1 197344300 197344650 -84849014 + MLT1J2 LTR MaLR 42 450 0 739 213 104 38 chr1 197344782 197344993 -84848671 + MIR SINE MIR 4 228 -34 256 322 35 0 chr1 197345399 197345486 -84848178 - L2 LINE L2 -1 3271 3182 342 295 69 29 chr1 197345567 197345740 -84847924 - L2 LINE L2 -272 3041 2862 238 231 77 15 chr1 197346030 197346095 -84847569 + L2 LINE L2 3245 3313 0 405 273 173 71 chr1 197346116 197346578 -84847086 + L2 LINE L2 2468 2976 -338 272 298 24 12 chr1 197346817 197346901 -84846763 + L2 LINE L2 3136 3220 -52 195 42 0 0 chr1 197346907 197346931 -84846733 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 212 273 13 39 chr1 197347566 197347643 -84846021 + T-rich Low_complexity Low_complexity 5 79 0 1240 150 42 29 chr1 197347860 197348100 -84845564 + AluJo SINE Alu 64 306 -6 319 346 0 19 chr1 197348200 197348307 -84845357 + L2 LINE L2 3209 3313 0 563 286 57 40 chr1 197348851 197349099 -84844565 - MIR SINE MIR -3 259 8 360 214 149 83 chr1 197349454 197349622 -84844042 + MER102a DNA MER1_type 152 330 0 355 298 56 14 chr1 197349897 197350073 -84843591 + MIR SINE MIR 35 221 -41 234 91 0 0 chr1 197350301 197350334 -84843330 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 6822 34 1 0 chr1 197350751 197351541 -84842123 + L1PA5 LINE L1 5363 6153 -1 279 0 0 0 chr1 197352174 197352205 -84841459 + (T)n Simple_repeat Simple_repeat 1 31 0 336 252 155 26 chr1 197353068 197353184 -84840480 + MIR SINE MIR 17 146 -62 204 274 72 92 chr1 197354164 197354317 -84839347 + MIR SINE MIR 56 205 -57 247 284 44 37 chr1 197355840 197355971 -84837693 - MIR SINE MIR -68 140 4 22 0 0 0 chr1 197356355 197356377 -84837287 + AT_rich Low_complexity Low_complexity 1 22 0 1605 165 25 25 chr1 197356377 197356656 -84837008 - AluJo SINE Alu -33 279 1 194 167 0 24 chr1 197356922 197356964 -84836700 - L2 LINE L2 -2 3311 3271 700 264 14 19 chr1 197358157 197358369 -84835295 + MIR SINE MIR 46 256 -6 238 159 0 23 chr1 197358369 197358413 -84835251 + MER102a DNA MER1_type 288 330 0 269 265 15 0 chr1 197358760 197358828 -84834836 + L2 LINE L2 3202 3270 -2 210 273 91 0 chr1 197360136 197360191 -84833473 - L2 LINE L2 -20 3252 3193 203 308 70 76 chr1 197360267 197360452 -84833212 + L2 LINE L2 3019 3202 -70 389 279 18 55 chr1 197360493 197360546 -84833118 + MIR SINE MIR 102 155 -107 1075 149 109 41 chr1 197360546 197360767 -84832897 + MER46A DNA MER2_type 1 236 0 389 279 18 55 chr1 197360767 197360878 -84832786 + MIR SINE MIR 155 260 -2 3354 163 27 2 chr1 197361128 197361718 -84831946 + L1MB5 LINE L1 5570 6174 0 401 265 74 19 chr1 197364469 197364631 -84829033 + MIR3 SINE MIR 37 207 -1 421 270 88 27 chr1 197364829 197364977 -84828687 - MER91A DNA MER1_type -21 175 19 373 267 127 8 chr1 197365285 197365440 -84828224 - MIR SINE MIR -62 146 19 258 308 78 70 chr1 197365887 197366231 -84827433 + L2 LINE L2 2257 2603 -711 186 278 0 42 chr1 197366266 197366338 -84827326 + L2 LINE L2 2690 2758 -556 259 370 104 0 chr1 197366605 197366740 -84826924 + L2 LINE L2 3124 3272 0 255 61 0 0 chr1 197368322 197368355 -84825309 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 234 0 0 0 chr1 197369617 197369643 -84824021 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 570 245 41 13 chr1 197369890 197370076 -84823588 - MIR SINE MIR -56 206 13 24 32 0 0 chr1 197370821 197370852 -84822812 + AT_rich Low_complexity Low_complexity 1 31 0 2394 75 0 3 chr1 197372312 197372607 -84821057 - AluY SINE Alu -17 294 1 438 266 121 0 chr1 197373419 197373592 -84820072 - MIR SINE MIR -16 246 53 432 0 0 0 chr1 197374432 197374480 -84819184 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 198 71 0 0 chr1 197374861 197374889 -84818775 + (TC)n Simple_repeat Simple_repeat 1 28 0 383 333 41 14 chr1 197375226 197375373 -84818291 + L3 LINE CR1 1415 1565 -12 198 217 136 116 chr1 197375623 197375821 -84817843 + L2 LINE L2 2986 3187 -85 446 222 50 20 chr1 197377182 197377327 -84816337 + MIR SINE MIR 18 161 -66 2199 121 3 16 chr1 197377591 197377905 -84815759 + AluSx SINE Alu 1 310 -2 323 227 0 13 chr1 197378347 197378422 -84815242 - LTR67 LTR ERVL 0 557 484 1511 184 129 25 chr1 197378449 197378884 -84814780 + Charlie4a DNA MER1_type 29 508 0 950 209 11 6 chr1 197378911 197379088 -84814576 - MER45A DNA AcHobo 0 178 1 * 1438 245 51 55 chr1 197379088 197379555 -84814109 - LTR67 LTR ERVL -89 468 4 3277 125 33 50 chr1 197380372 197380683 -84812981 - MER4B LTR ERV1 0 779 464 2080 107 35 3 chr1 197380683 197380972 -84812692 + AluSq SINE Alu 3 300 -13 3277 125 33 50 chr1 197380972 197381280 -84812384 - MER4B LTR ERV1 -315 464 1 196 150 83 50 chr1 197381394 197381454 -84812210 - MIR SINE MIR -75 187 126 1123 176 18 59 chr1 197381675 197381947 -84811717 - L1MD3 LINE L1 -5 7990 7730 443 344 25 25 chr1 197382942 197383183 -84810481 - MIR SINE MIR -8 254 14 361 317 62 0 chr1 197383404 197383549 -84810115 + MIR3 SINE MIR 43 196 -12 1026 143 10 25 chr1 197383942 197384138 -84809526 + MER96B DNA MER1_type? 44 236 -181 372 266 201 6 chr1 197384162 197384331 -84809333 - MIR SINE MIR -56 206 5 370 315 7 13 chr1 197385070 197385219 -84808445 - MIR3 SINE MIR -7 201 54 289 363 100 50 chr1 197386112 197386432 -84807232 + L2 LINE L2 2932 3267 -5 447 281 103 13 chr1 197387033 197387257 -84806407 - MIR SINE MIR -13 249 6 301 310 0 0 chr1 197388009 197388096 -84805568 - L2 LINE L2 0 3313 3227 6645 142 7 5 chr1 197388288 197389869 -84803795 - L1M1 LINE L1 -545 5757 4171 2701 265 60 28 chr1 197389866 197390591 -84803073 - L1MDa LINE L1 -5349 1191 354 * 186 43 0 0 chr1 197390591 197390614 -84803050 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2701 265 60 28 chr1 197390614 197390951 -84802713 - L1MDa LINE L1 -6186 354 29 3039 232 79 5 chr1 197390951 197391714 -84801950 - Zaphod DNA AcHobo -3212 819 1 28 0 0 0 chr1 197392457 197392485 -84801179 + AT_rich Low_complexity Low_complexity 1 28 0 803 242 154 47 chr1 197394935 197395357 -84798307 + L2 LINE L2 2804 3270 -43 378 0 0 0 chr1 197395775 197395817 -84797847 + (CA)n Simple_repeat Simple_repeat 2 43 0 540 230 0 40 chr1 197395844 197395970 -84797694 + L2 LINE L2 3192 3312 -1 402 239 100 0 chr1 197395993 197396123 -84797541 - Charlie8 DNA MER1_type -2236 181 39 253 127 95 16 chr1 197397673 197397736 -84795928 + GA-rich Low_complexity Low_complexity 2 69 0 304 116 5 0 chr1 197399171 197399215 -84794449 - MLT2B2 LTR ERVL -8 507 465 300 27 0 0 chr1 197399215 197399252 -84794412 + (TG)n Simple_repeat Simple_repeat 2 38 0 2122 142 7 0 chr1 197399728 197400038 -84793626 + AluSx SINE Alu 1 312 0 180 0 0 0 chr1 197400118 197400138 -84793526 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1960 110 4 0 chr1 197400140 197400395 -84793269 - AluSx SINE Alu -25 287 32 363 23 0 0 chr1 197400600 197400644 -84793020 + (CA)n Simple_repeat Simple_repeat 2 45 0 297 167 0 0 chr1 197400645 197400693 -84792971 + MLT2B2 LTR ERVL 468 515 0 897 286 111 40 chr1 197402903 197403441 -84790223 + L2 LINE L2 2550 3141 -172 2358 74 3 7 chr1 197403441 197403737 -84789927 - AluY SINE Alu -16 295 1 897 286 111 40 chr1 197403737 197403923 -84789741 + L2 LINE L2 3141 3312 -1 552 286 95 32 chr1 197404000 197404252 -84789412 - MLT1H1 LTR MaLR -91 464 197 244 308 77 22 chr1 197404266 197404357 -84789307 + MIR SINE MIR 49 144 -64 1400 114 5 10 chr1 197406004 197406205 -84787459 - AluSc SINE Alu -10 299 100 227 349 74 13 chr1 197406209 197406358 -84787306 + L2 LINE L2 341 498 -2816 369 89 0 18 chr1 197406470 197406526 -84787138 - MLT2A2 LTR ERVL 0 453 399 270 0 0 0 chr1 197406526 197406556 -84787108 + (TA)n Simple_repeat Simple_repeat 1 30 0 214 152 22 22 chr1 197406573 197406619 -84787045 + (TA)n Simple_repeat Simple_repeat 1 46 0 313 245 0 43 chr1 197406631 197406725 -84786939 - L1MC4 LINE L1 -1339 6703 6614 257 258 21 62 chr1 197406646 197406743 -84786921 + L1MC4 LINE L1 6611 6703 -1339 * 234 230 0 100 chr1 197406737 197406837 -84786827 - L1MC4 LINE L1 -1339 6703 6614 * 264 217 43 65 chr1 197406863 197406955 -84786709 - L1MC4 LINE L1 -1339 6703 6614 230 143 0 0 chr1 197406967 197407009 -84786655 - LTR66 LTR ERVL -171 439 398 308 289 0 0 chr1 197407033 197407123 -84786541 - L1MC4 LINE L1 -1339 6703 6614 244 310 23 0 chr1 197407139 197407226 -84786438 - L1MC4 LINE L1 -1339 6703 6615 255 204 0 0 chr1 197407231 197407285 -84786379 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 230 143 0 0 chr1 197407285 197407327 -84786337 + LTR66 LTR ERVL 398 439 -171 246 170 38 0 chr1 197407363 197407416 -84786248 - L1MC4 LINE L1 -1339 6703 6649 2735 68 21 89 chr1 197407420 197407848 -84785816 - MLT2A1 LTR ERVL -45 399 1 405 335 51 70 chr1 197408044 197408558 -84785106 + L2 LINE L2 878 1381 -1933 1555 238 115 35 chr1 197408644 197409185 -84784479 + MLT1L LTR MaLR 24 607 -8 336 341 122 13 chr1 197409189 197409567 -84784097 + L2 LINE L2 1485 1903 -1411 15248 197 36 19 chr1 197409582 197415778 -84777886 + L1PB1 LINE L1 6 6507 -360 243 0 0 0 chr1 197415799 197415826 -84777838 + (CA)n Simple_repeat Simple_repeat 2 28 0 301 202 10 71 chr1 197415841 197415940 -84777724 + L1MC4 LINE L1 6614 6706 -1336 507 93 0 74 chr1 197415942 197416104 -84777560 + (TA)n Simple_repeat Simple_repeat 2 151 0 2304 156 11 16 chr1 197416111 197416305 -84777359 + L1PB1 LINE L1 6492 6685 -182 1901 120 0 11 chr1 197416305 197416579 -84777085 + AluSc SINE Alu 1 271 -38 2304 156 11 16 chr1 197416579 197416762 -84776902 + L1PB1 LINE L1 6685 6867 0 495 348 115 43 chr1 197416916 197417754 -84775910 + L2 LINE L2 2005 2902 -412 2836 90 20 25 chr1 197417759 197418161 -84775503 + MLT2A1 LTR ERVL 1 400 -44 232 301 24 0 chr1 197418162 197418245 -84775419 - L1MC4 LINE L1 -1344 6698 6614 412 208 0 25 chr1 197418245 197418404 -84775260 + (TA)n Simple_repeat Simple_repeat 1 155 0 401 57 38 0 chr1 197418418 197418471 -84775193 + MLT2A2 LTR ERVL 399 453 0 44874 69 15 1 chr1 197418471 197424044 -84769620 + HERVL-A2-A1 LTR ERVL 1 5654 0 1148 49 0 0 chr1 197424044 197424186 -84769478 + MLT2A1 LTR ERVL 1 142 -302 384 83 0 14 chr1 197424192 197424252 -84769412 + MLT2A2 LTR ERVL 402 451 -2 342 0 0 0 chr1 197424286 197424324 -84769340 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 229 83 0 chr1 197424420 197424468 -84769196 + L2 LINE L2 3221 3272 0 198 204 227 0 chr1 197426716 197426782 -84766882 + MIR SINE MIR 38 117 -92 338 247 218 12 chr1 197426804 197426954 -84766710 - MER5A DNA MER1_type 0 189 4 395 298 80 38 chr1 197428079 197428317 -84765347 + MLT1L LTR MaLR 2 249 -366 419 301 28 20 chr1 197428350 197428576 -84765088 + MLT1L LTR MaLR 234 615 0 262 337 41 20 chr1 197428603 197428701 -84764963 + MIR SINE MIR 33 132 -130 1627 211 42 30 chr1 197429309 197429670 -84763994 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr1 197429983 197430005 -84763659 + (T)n Simple_repeat Simple_repeat 1 22 0 622 275 29 75 chr1 197430783 197430843 -84762821 + HAL1 LINE L1 24 85 -2422 2343 102 0 0 chr1 197430843 197431138 -84762526 - AluSg SINE Alu -15 295 1 622 275 29 75 chr1 197431138 197431426 -84762238 + HAL1 LINE L1 85 356 -2151 813 180 11 60 chr1 197431427 197431610 -84762054 - AluJb SINE Alu -10 302 129 24786 76 3 1 chr1 197431612 197435535 -84758129 - L1PA6 LINE L1 -2 6152 2221 1016 101 0 0 chr1 197435538 197435677 -84757987 + L1P LINE L1 4867 5005 -1141 * 13064 146 21 25 chr1 197435671 197437890 -84755774 - L1PA6 LINE L1 -3926 2220 11 707 201 15 8 chr1 197437901 197438035 -84755629 - AluJb SINE Alu -176 136 2 4630 251 94 46 chr1 197438049 197439945 -84753719 + HAL1 LINE L1 362 2349 -158 306 234 0 0 chr1 197440000 197440064 -84753600 - L2 LINE L2 -978 2336 2273 624 247 12 12 chr1 197440108 197440270 -84753394 - MER105 DNA DNA -42 162 1 356 342 88 16 chr1 197440323 197440630 -84753034 - L2 LINE L2 -1146 2168 1840 3175 177 24 9 chr1 197441112 197441653 -84752011 - MER44D DNA MER2_type 0 605 2 189 0 0 0 chr1 197442074 197442095 -84751569 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 3954 191 60 27 chr1 197442095 197442912 -84750752 - MER21B LTR ERV1 -19 844 1 740 286 47 88 chr1 197444221 197444755 -84748909 + LTR67 LTR ERVL 3 514 -43 2708 193 68 25 chr1 197444757 197445287 -84748377 + MER41C LTR ERV1 1 553 -1 2700 190 15 0 chr1 197445288 197445751 -84747913 + MER41C-int LTR ERV1 1 470 -7286 * 53497 90 12 3 chr1 197445750 197452788 -84740876 + MER41C-int LTR ERV1 658 5944 -2 2605 192 65 34 chr1 197452788 197453325 -84740339 + MER41C LTR ERV1 1 554 0 288 255 39 49 chr1 197453551 197453653 -84740011 + MER103 DNA DNA 17 117 -49 390 206 187 0 chr1 197454490 197454597 -84739067 + L2 LINE L2 3186 3312 -1 290 87 22 0 chr1 197455113 197455159 -84738505 + (TG)n Simple_repeat Simple_repeat 2 48 0 209 30 61 0 chr1 197455337 197455370 -84738294 + A-rich Low_complexity Low_complexity 2 36 0 2162 59 44 0 chr1 197455373 197455675 -84737989 + AluY SINE Alu 3 316 0 12068 167 45 35 chr1 197455675 197457902 -84735762 + L1MC3 LINE L1 5324 7580 -205 943 158 0 0 chr1 197457902 197458035 -84735629 + FLAM_C SINE Alu 1 133 0 12068 167 45 35 chr1 197458035 197458244 -84735420 + L1MC3 LINE L1 7580 7785 0 1896 235 64 49 chr1 197458231 197458618 -84735046 + L1MEc LINE L1 2252 2632 -3583 * 2076 128 0 3 chr1 197458618 197458915 -84734749 - AluSx SINE Alu -16 296 1 1896 235 64 49 chr1 197458915 197459433 -84734231 + L1MEc LINE L1 2632 3129 -3086 436 285 55 99 chr1 197459414 197459908 -84733756 + L1MEc LINE L1 3823 4294 -1921 * 2148 137 0 13 chr1 197459997 197460303 -84733361 + AluSx SINE Alu 1 302 -10 270 286 79 24 chr1 197460312 197460438 -84733226 + L1MEc LINE L1 4327 4459 -1756 1419 210 108 24 chr1 197460449 197460820 -84732844 + LTR40c LTR ERVL 59 460 -5 832 241 98 142 chr1 197460826 197461359 -84732305 + L1MEc LINE L1 4478 5026 -1189 270 214 86 0 chr1 197461359 197461429 -84732235 - MER116 DNA Mariner -4 76 1 832 241 98 142 chr1 197461429 197461773 -84731891 + L1MEc LINE L1 5026 5383 -832 3904 178 83 8 chr1 197461775 197462533 -84731131 - Charlie1a DNA MER1_type -640 815 1 1159 197 141 75 chr1 197462917 197463293 -84730371 + MER57A LTR ERV1 3 403 0 782 152 162 88 chr1 197463720 197463924 -84729740 + MER20 DNA MER1_type 1 219 0 1784 168 3 16 chr1 197464247 197464594 -84729070 + MER65A LTR ERV1 1 426 -19 2025 266 69 36 chr1 197464651 197465554 -84728110 + MER65A-int LTR ERV1 54 985 -3886 1288 212 75 69 chr1 197465546 197465685 -84727979 + MER65A-int LTR ERV1 1304 1441 -5317 * 18621 85 49 0 chr1 197465685 197468899 -84724765 + L1PA7 LINE L1 2888 6151 -3 1288 212 75 69 chr1 197468899 197469223 -84724441 + MER65A-int LTR ERV1 1441 1762 -4996 2204 101 10 7 chr1 197469223 197469529 -84724135 + AluY SINE Alu 1 307 -4 1288 212 75 69 chr1 197469529 197469954 -84723710 + MER65A-int LTR ERV1 1762 2323 -4435 894 186 27 41 chr1 197470374 197470595 -84723069 + MER65A-int LTR ERV1 3513 3730 -2868 2922 160 89 99 chr1 197470675 197471316 -84722348 + MER65A-int LTR ERV1 3730 4376 -1955 2336 85 3 0 chr1 197471316 197471610 -84722054 - AluSq SINE Alu -18 295 1 2922 160 89 99 chr1 197471610 197471982 -84721682 + MER65A-int LTR ERV1 4376 4770 -1561 2019 144 3 0 chr1 197471982 197472281 -84721383 - AluSx SINE Alu -12 300 1 2922 160 89 99 chr1 197472281 197472552 -84721112 + MER65A-int LTR ERV1 4770 5042 -1289 24 32 0 0 chr1 197472805 197472836 -84720828 + AT_rich Low_complexity Low_complexity 1 31 0 446 179 22 49 chr1 197472847 197473010 -84720654 + MER65A-int LTR ERV1 3729 3962 -974 1930 237 59 5 chr1 197473177 197473599 -84720065 + MER65A-int LTR ERV1 3618 4062 -809 * 2193 218 15 8 chr1 197473594 197474066 -84719598 + MER65A-int LTR ERV1 4397 4871 0 2512 162 25 25 chr1 197474066 197474105 -84719559 + MER65A LTR ERV1 1 39 -406 225 65 0 0 chr1 197474105 197474136 -84719528 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2512 162 25 25 chr1 197474136 197474541 -84719123 + MER65A LTR ERV1 38 445 0 462 229 204 68 chr1 197474926 197475096 -84718568 + L2 LINE L2 1814 1960 -1354 2162 124 0 3 chr1 197475096 197475402 -84718262 - AluSc SINE Alu -4 305 1 462 229 204 68 chr1 197475402 197475511 -84718153 + L2 LINE L2 1960 2131 -1183 6162 226 52 16 chr1 197475536 197475579 -84718085 + L1MB7 LINE L1 2253 2293 -4127 2073 80 58 0 chr1 197475579 197475853 -84717811 + AluSp SINE Alu 1 290 -23 6162 226 52 16 chr1 197475853 197478720 -84714944 + L1MB7 LINE L1 2293 6419 -1 1117 241 130 3 chr1 197478726 197479049 -84714615 + L2 LINE L2 2436 2799 -515 335 197 15 15 chr1 197479050 197479116 -84714548 + MER3 DNA MER1_type 39 104 -105 291 155 0 35 chr1 197479142 197479200 -84714464 + MER3 DNA MER1_type 2265 2320 0 1853 152 24 112 chr1 197479240 197479660 -84714004 - MLT1B LTR MaLR -7 383 1 487 215 0 89 chr1 197479660 197479774 -84713890 + MER3 DNA MER1_type 2347 2446 0 718 135 0 45 chr1 197479788 197479899 -84713765 - FLAM_A SINE Alu -22 120 15 832 140 79 22 chr1 197479899 197480077 -84713587 + MER3 DNA MER1_type 2436 2623 0 393 279 167 34 chr1 197480080 197480284 -84713380 + L2 LINE L2 2804 3034 -279 240 206 48 0 chr1 197480292 197480355 -84713309 - L1MC4 LINE L1 -1339 6983 2006 383 295 218 0 chr1 197480398 197480591 -84713073 - LTR16C LTR ERVL -99 392 158 1578 200 66 30 chr1 197480732 197481097 -84712567 + MLT1B LTR MaLR 10 387 -3 453 228 106 42 chr1 197481113 197481302 -84712362 + L2 LINE L2 3113 3313 0 766 234 72 12 chr1 197481360 197481527 -84712137 - MER45A DNA AcHobo -1 177 1 425 345 134 37 chr1 197481531 197481997 -84711667 + L2 LINE L2 2228 2770 -544 2155 117 3 3 chr1 197481997 197482297 -84711367 - AluSc SINE Alu -9 300 1 425 345 134 37 chr1 197482297 197482447 -84711217 + L2 LINE L2 2770 2904 -410 368 247 31 0 chr1 197482461 197482558 -84711106 - MIR SINE MIR -98 164 65 183 167 0 0 chr1 197482577 197482619 -84711045 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 338 285 5 66 chr1 197484144 197484281 -84709383 - MIR SINE MIR -63 145 63 2010 161 32 24 chr1 197484281 197484653 -84709011 + THE1C LTR MaLR 1 375 0 338 285 5 66 chr1 197484653 197484700 -84708964 - MIR SINE MIR -145 63 15 987 149 154 31 chr1 197486368 197486563 -84707101 + MER20 DNA MER1_type 1 219 0 2147 185 113 21 chr1 197487676 197488099 -84705565 + MLT2B1 LTR ERVL 1 384 -136 252 0 0 0 chr1 197488099 197488127 -84705537 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 414 39 0 0 chr1 197488126 197488178 -84705486 + (CA)n Simple_repeat Simple_repeat 1 52 0 2147 185 113 21 chr1 197488127 197488230 -84705434 + MLT2B1 LTR ERVL 384 520 0 212 212 15 0 chr1 197490323 197490389 -84703275 + GA-rich Low_complexity Low_complexity 2 68 0 * 312 130 0 39 chr1 197490378 197490455 -84703209 + (GGAGA)n Simple_repeat Simple_repeat 2 75 0 492 156 0 0 chr1 197491261 197491351 -84702313 + (TG)n Simple_repeat Simple_repeat 1 90 0 768 279 74 0 chr1 197492487 197492716 -84700948 + MIR SINE MIR 13 258 -4 486 270 15 29 chr1 197492768 197492905 -84700759 + MIR3 SINE MIR 61 195 -13 252 0 0 0 chr1 197496202 197496230 -84697434 + (TG)n Simple_repeat Simple_repeat 2 29 0 401 104 30 0 chr1 197496263 197496330 -84697334 + CT-rich Low_complexity Low_complexity 4 72 0 512 272 37 47 chr1 197496417 197496608 -84697056 - MIR3 SINE MIR -6 202 14 1635 178 14 14 chr1 197498000 197498292 -84695372 + AluJo SINE Alu 1 292 -20 387 89 0 0 chr1 197498292 197498348 -84695316 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 386 229 12 12 chr1 197499360 197499443 -84694221 + MER81 DNA DNA 1 83 -31 894 298 82 39 chr1 197500456 197500737 -84692927 + L3 LINE CR1 1050 1358 -219 6953 45 1 0 chr1 197500737 197501529 -84692135 + L1PA5 LINE L1 5356 6148 -6 894 298 82 39 chr1 197501529 197501684 -84691980 + L3 LINE CR1 1358 1505 -72 2185 105 7 7 chr1 197502161 197502457 -84691207 - AluSg SINE Alu -1 309 14 2142 133 0 0 chr1 197503331 197503640 -84690024 + AluSx SINE Alu 2 310 -2 1311 39 11 11 chr1 197506503 197506682 -84686982 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 581 89 0 11 chr1 197506682 197506772 -84686892 + (TTCC)n Simple_repeat Simple_repeat 1 89 0 2296 102 0 0 chr1 197506772 197507067 -84686597 - AluY SINE Alu -16 295 1 342 300 17 8 chr1 197507274 197507394 -84686270 - MIR3 SINE MIR -6 202 82 1516 230 55 39 chr1 197507526 197507965 -84685699 + LTR16A1 LTR ERVL 1 446 -11 623 244 83 51 chr1 197508567 197508879 -84684785 - MER113 DNA MER1_type? -195 326 5 240 267 99 53 chr1 197509095 197509226 -84684438 - L2 LINE L2 0 3272 3136 2332 174 62 120 chr1 197509680 197510416 -84683248 + LTR8A LTR ERV1 34 727 0 215 79 26 0 chr1 197511321 197511359 -84682305 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1879 150 10 7 chr1 197512390 197512697 -84680967 - AluSx SINE Alu -3 309 2 343 309 72 14 chr1 197513399 197513538 -84680126 + MIR SINE MIR 25 171 -91 215 281 70 44 chr1 197514549 197514663 -84679001 - MIR SINE MIR -48 214 98 357 293 17 10 chr1 197516074 197516206 -84677458 + MER5A DNA MER1_type 40 169 -9 257 297 0 0 chr1 197516353 197516417 -84677247 + CT-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr1 197516843 197516864 -84676800 + AT_rich Low_complexity Low_complexity 1 21 0 273 348 30 15 chr1 197517539 197517674 -84675990 - L2 LINE L2 -2 3270 3134 199 364 35 7 chr1 197518054 197518197 -84675467 - L2 LINE L2 -611 2703 2557 830 286 66 66 chr1 197518527 197519223 -84674441 + L2 LINE L2 2624 3311 -2 3809 126 17 8 chr1 197519398 197519993 -84673671 - MER51C LTR ERV1 0 640 1 730 294 29 18 chr1 197520064 197520404 -84673260 + L1M4 LINE L1 3346 3689 -2457 1592 89 0 5 chr1 197520408 197520610 -84673054 + AluSg/x SINE Alu 80 280 -32 217 0 29 29 chr1 197520613 197520647 -84673017 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 33 66 0 0 chr1 197520979 197521040 -84672624 + AT_rich Low_complexity Low_complexity 1 61 0 470 323 65 32 chr1 197521108 197521604 -84672060 + HAL1 LINE L1 1109 1620 -887 717 281 54 10 chr1 197521988 197522283 -84671381 + L1ME3A LINE L1 3191 3498 -2648 216 135 0 0 chr1 197522388 197522425 -84671239 + (A)n Simple_repeat Simple_repeat 1 37 0 370 306 63 43 chr1 197522487 197522788 -84670876 + L1ME3A LINE L1 3657 3963 -2183 23 54 0 0 chr1 197522870 197522907 -84670757 + AT_rich Low_complexity Low_complexity 1 37 0 2011 141 23 0 chr1 197522921 197523225 -84670439 - AluSx SINE Alu -1 311 1 30 27 0 0 chr1 197523232 197523269 -84670395 + AT_rich Low_complexity Low_complexity 1 37 0 297 306 57 73 chr1 197523381 197524271 -84669393 + L1ME3A LINE L1 4108 4983 -1163 785 321 43 37 chr1 197524406 197524978 -84668686 + L1ME3A LINE L1 5303 5881 -289 522 282 78 64 chr1 197524456 197525049 -84668615 + L1MB1 LINE L1 5354 5954 -235 * 24 0 0 0 chr1 197528204 197528228 -84665436 + AT_rich Low_complexity Low_complexity 1 24 0 866 229 38 29 chr1 197528673 197528913 -84664751 + MIR SINE MIR 18 259 -3 318 288 131 39 chr1 197529010 197529163 -84664501 + MIR SINE MIR 32 198 -64 2248 125 3 10 chr1 197529337 197529649 -84664015 - AluSx SINE Alu -2 310 1 300 354 16 8 chr1 197530719 197530846 -84662818 - MIR SINE MIR -61 147 20 941 300 159 31 chr1 197532146 197532827 -84660837 - L3 LINE CR1 -185 1392 625 304 261 87 9 chr1 197533311 197533426 -84660238 + L2 LINE L2 3189 3312 -1 204 346 88 15 chr1 197533487 197533623 -84660041 - L2 LINE L2 -219 3053 2908 335 325 161 33 chr1 197533794 197534154 -84659510 - L3 LINE CR1 -1081 496 91 2248 123 0 0 chr1 197534641 197534949 -84658715 - AluSx SINE Alu -3 309 2 1069 170 0 0 chr1 197536568 197536733 -84656931 - FRAM SINE Alu -14 162 1 2114 171 57 46 chr1 197543631 197544088 -84649576 - MLT1D LTR MaLR 0 505 44 2307 106 3 0 chr1 197544172 197544474 -84649190 + AluSx SINE Alu 1 303 -9 1449 191 128 11 chr1 197544713 197545064 -84648600 - MLT1C LTR MaLR -3 464 73 465 270 146 17 chr1 197545600 197545778 -84647886 + MIR SINE MIR 26 226 -36 279 0 0 0 chr1 197545843 197545874 -84647790 + (T)n Simple_repeat Simple_repeat 1 31 0 200 159 91 0 chr1 197546893 197546937 -84646727 - L2 LINE L2 -2 3311 3264 308 316 10 0 chr1 197547211 197547309 -84646355 - MIR SINE MIR -69 139 41 2289 162 62 2 chr1 197547411 197547813 -84645851 + MSTB LTR MaLR 1 426 0 213 296 153 41 chr1 197548634 197548732 -84644932 - L2 LINE L2 -272 3041 2933 286 257 9 9 chr1 197549866 197550089 -84643575 + (TG)n Simple_repeat Simple_repeat 1 223 0 219 135 0 27 chr1 197550618 197550655 -84643009 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 545 221 61 55 chr1 197551329 197551492 -84642172 - MIR SINE MIR -16 246 83 463 286 63 19 chr1 197551792 197551998 -84641666 - MIR SINE MIR -12 250 36 238 87 43 0 chr1 197552348 197552394 -84641270 + (TA)n Simple_repeat Simple_repeat 2 49 0 677 237 9 7 chr1 197552522 197552719 -84640945 + MIR SINE MIR 2 195 -63 302 261 23 0 chr1 197553551 197553639 -84640025 + L2 LINE L2 2573 2662 -652 288 0 0 0 chr1 197553807 197553839 -84639825 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 439 286 97 47 chr1 197554119 197554402 -84639262 - L2 LINE L2 -341 2973 2667 2488 82 3 0 chr1 197554402 197554706 -84638958 + AluSp SINE Alu 1 305 -8 439 286 97 47 chr1 197554706 197554782 -84638882 - L2 LINE L2 -647 2667 2596 635 105 23 0 chr1 197554782 197554868 -84638796 + AluSg/x SINE Alu 202 289 -23 342 342 57 0 chr1 197555751 197555909 -84637755 + MIR SINE MIR 20 186 -76 1214 73 0 0 chr1 197555946 197556096 -84637568 + AluYa5 SINE Alu 153 302 -9 183 42 0 0 chr1 197556885 197556909 -84636755 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1029 301 102 17 chr1 197557241 197557779 -84635885 + L2 LINE L2 2701 3292 -21 2191 155 57 39 chr1 197558053 197558126 -84635538 - MLT1C LTR MaLR -2 465 395 2199 107 0 7 chr1 197558126 197558426 -84635238 + AluSc SINE Alu 3 300 -9 2191 155 57 39 chr1 197558426 197558809 -84634855 - MLT1C LTR MaLR -72 395 1 557 281 23 29 chr1 197561041 197561212 -84632452 + MER91B DNA MER1_type 14 183 -7 339 291 43 8 chr1 197561236 197561353 -84632311 - MIR SINE MIR -56 152 32 264 241 60 12 chr1 197561908 197561991 -84631673 - MIR SINE MIR -97 165 79 218 273 0 0 chr1 197562973 197563017 -84630647 + polypurine Low_complexity Low_complexity 1 44 0 279 273 26 0 chr1 197563153 197563230 -84630434 + MLT1K LTR MaLR 509 587 -1 251 273 0 0 chr1 197563644 197563699 -84629965 + L2 LINE L2 3217 3271 -1 3278 148 103 23 chr1 197564619 197565272 -84628392 + MER39 LTR ERV1 1 705 -2 206 340 21 0 chr1 197566268 197566365 -84627299 - MIR SINE MIR -16 246 148 242 295 77 97 chr1 197568213 197568420 -84625244 + MIR3 SINE MIR 3 205 -3 191 276 35 0 chr1 197569804 197569862 -84623802 - MIR SINE MIR -93 169 110 2178 205 12 12 chr1 197572519 197572949 -84620715 - MER63B DNA MER1_type -6 430 1 30 27 0 0 chr1 197573841 197573878 -84619786 + AT_rich Low_complexity Low_complexity 1 37 0 504 280 166 14 chr1 197574074 197574285 -84619379 - MIR SINE MIR -16 246 4 247 270 56 48 chr1 197574368 197574494 -84619170 - MIR SINE MIR -86 176 50 300 296 113 14 chr1 197575814 197575956 -84617708 + MIR3 SINE MIR 42 197 -11 21 0 0 0 chr1 197577347 197577368 -84616296 + AT_rich Low_complexity Low_complexity 1 21 0 2919 16 0 0 chr1 197577530 197577843 -84615821 + AluYb8 SINE Alu 1 313 -5 557 244 94 28 chr1 197579377 197579590 -84614074 - LTR16C LTR ERVL 0 491 265 330 260 83 0 chr1 197580821 197580937 -84612727 - MIR SINE MIR -49 159 31 392 168 10 0 chr1 197581053 197581154 -84612510 + (TG)n Simple_repeat Simple_repeat 1 102 0 223 264 47 11 chr1 197583253 197583382 -84610282 - MIR SINE MIR -76 186 10 764 261 62 29 chr1 197584049 197584290 -84609374 + MIR SINE MIR 8 256 -6 362 278 67 72 chr1 197584895 197585266 -84608398 + L3 LINE CR1 800 1240 -337 240 217 0 0 chr1 197585279 197585325 -84608339 - L2 LINE L2 0 3313 3268 588 242 117 8 chr1 197585550 197585824 -84607840 - L2 LINE L2 -250 3063 2755 945 264 80 54 chr1 197586043 197586430 -84607234 + MLT1I LTR MaLR 1 397 -12 537 314 59 17 chr1 197586628 197586864 -84606800 + L3 LINE CR1 1329 1574 -3 2068 196 30 28 chr1 197586905 197587370 -84606294 - MLT1C LTR MaLR -1 466 1 191 222 19 0 chr1 197587394 197587448 -84606216 - MIR SINE MIR -48 214 160 371 265 46 40 chr1 197587574 197587725 -84605939 - MIR SINE MIR -92 170 19 2394 97 0 0 chr1 197588532 197588830 -84604834 - AluSx SINE Alu -14 298 1 1028 118 52 0 chr1 197589202 197589355 -84604309 + MLT1A1 LTR MaLR 1 161 -204 1676 168 51 4 chr1 197589359 197589633 -84604031 + AluJb SINE Alu 5 291 -21 664 165 9 0 chr1 197589649 197589758 -84603906 + MLT1A1 LTR MaLR 256 365 0 219 313 31 0 chr1 197589758 197589822 -84603842 + polypurine Low_complexity Low_complexity 1 66 0 232 211 26 0 chr1 197591621 197591697 -84601967 + (CATA)n Simple_repeat Simple_repeat 3 80 0 274 229 251 0 chr1 197591706 197591847 -84601817 - MIR SINE MIR -62 200 30 212 288 150 0 chr1 197591945 197592105 -84601559 - L3b LINE CR1 -196 1387 1204 2421 53 0 0 chr1 197592231 197592583 -84601081 + AluY SINE Alu 1 352 0 225 175 0 0 chr1 197592594 197592634 -84601030 - L2 LINE L2 -93 3220 3181 2087 119 31 7 chr1 197593946 197594240 -84599424 + AluSc SINE Alu 1 301 -8 1940 102 0 0 chr1 197595042 197595286 -84598378 - AluSq SINE Alu -69 244 1 184 224 60 52 chr1 197596171 197596273 -84597391 - MIR SINE MIR -46 216 115 700 229 44 49 chr1 197597442 197597647 -84596017 - MIR SINE MIR -34 228 25 246 324 14 35 chr1 197598476 197598621 -84595043 + MIR SINE MIR 15 156 -106 243 200 0 0 chr1 197599513 197599573 -84594091 - L1ME4a LINE L1 -1 6120 6061 490 285 58 21 chr1 197600748 197600952 -84592712 + MIR SINE MIR 49 255 -7 508 114 66 0 chr1 197602271 197602438 -84591226 + (TA)n Simple_repeat Simple_repeat 1 178 0 234 280 28 9 chr1 197602449 197602556 -84591108 + MER112 DNA MER1_type 43 151 -109 * 295 196 0 0 chr1 197602544 197602595 -84591069 - tRNA-Arg-CGC tRNA tRNA -24 52 2 1385 164 52 52 chr1 197602732 197603056 -84590608 - MER33 DNA MER1_type 0 324 1 29 0 0 0 chr1 197603100 197603129 -84590535 + AT_rich Low_complexity Low_complexity 1 29 0 1050 109 4 7 chr1 197603167 197603436 -84590228 + (TTCC)n Simple_repeat Simple_repeat 1 267 0 378 287 8 25 chr1 197603989 197604111 -84589553 - MIR SINE MIR -61 201 82 256 280 80 8 chr1 197604659 197604784 -84588880 + MER103 DNA DNA 2 135 -31 421 222 291 21 chr1 197604862 197605051 -84588613 + MIR SINE MIR 8 247 -15 263 298 48 36 chr1 197605367 197605451 -84588213 - MER117 DNA MER1_type 0 197 113 227 95 54 54 chr1 197605534 197605608 -84588056 + (TATAA)n Simple_repeat Simple_repeat 1 74 0 291 254 0 16 chr1 197606113 197606176 -84587488 - MIR SINE MIR -131 77 16 209 253 108 36 chr1 197606835 197606918 -84586746 - L2 LINE L2 0 3313 3225 261 57 0 0 chr1 197607416 197607451 -84586213 + (TC)n Simple_repeat Simple_repeat 2 36 0 196 194 0 30 chr1 197608066 197608133 -84585531 + CT-rich Low_complexity Low_complexity 1 65 0 1078 260 34 86 chr1 197608263 197608798 -84584866 + MLT1J LTR MaLR 5 511 0 265 316 6 90 chr1 197610388 197610565 -84583099 + L2 LINE L2 3019 3180 -92 1596 248 96 26 chr1 197610565 197611178 -84582486 - L2 LINE L2 -548 2766 2111 6898 37 4 0 chr1 197611182 197612012 -84581652 - L1PA4 LINE L1 -4033 2113 1281 * 27353 32 4 1 chr1 197612011 197616045 -84577619 + L1PA4 LINE L1 2114 6155 0 451 247 9 119 chr1 197616092 197616319 -84577345 - L2 LINE L2 -1213 2101 1900 863 272 75 4 chr1 197616320 197616599 -84577065 - L2 LINE L2 -1657 1657 1359 216 263 21 116 chr1 197616603 197616698 -84576966 + L2 LINE L2 3186 3271 -1 219 180 20 20 chr1 197616897 197616947 -84576717 + (TATG)n Simple_repeat Simple_repeat 1 50 0 335 315 17 57 chr1 197620286 197620493 -84573171 - L2 LINE L2 -268 3045 2857 2345 101 0 0 chr1 197620493 197620799 -84572865 + AluY SINE Alu 1 306 -5 335 315 17 57 chr1 197620799 197620926 -84572738 - L2 LINE L2 -456 2857 2727 250 219 23 31 chr1 197622350 197622478 -84571186 + (TATG)n Simple_repeat Simple_repeat 4 130 0 353 293 28 0 chr1 197622485 197622591 -84571073 + (TG)n Simple_repeat Simple_repeat 2 110 0 491 221 8 23 chr1 197623352 197623483 -84570181 + MIR SINE MIR 134 262 0 2286 94 20 3 chr1 197623716 197624013 -84569651 - AluSc SINE Alu -6 303 2 266 349 0 0 chr1 197624767 197624853 -84568811 + (CA)n Simple_repeat Simple_repeat 1 86 0 209 216 0 0 chr1 197624928 197624965 -84568699 + polypyrimidine Low_complexity Low_complexity 3 39 0 433 229 61 155 chr1 197625906 197626203 -84567461 + L2 LINE L2 3004 3272 0 319 269 76 17 chr1 197626592 197626711 -84566953 - MIR3 SINE MIR -7 201 76 1816 42 0 0 chr1 197626725 197626942 -84566722 - L1PA5 LINE L1 0 6154 5938 321 276 156 35 chr1 197627738 197628143 -84565521 - L2 LINE L2 -26 3287 2834 1226 174 1 1 chr1 197628219 197628452 -84565212 + L1MB4 LINE L1 5655 5887 -296 768 196 29 6 chr1 197628470 197628643 -84565021 + L1MB4 LINE L1 6004 6180 0 245 158 53 35 chr1 197628716 197628773 -84564891 - L1MC4 LINE L1 -23 8019 7962 1625 165 16 53 chr1 197629055 197629377 -84564287 - AluJo SINE Alu -2 310 1 2409 72 0 3 chr1 197629979 197630271 -84563393 - AluSx SINE Alu -16 296 6 250 310 0 0 chr1 197630291 197630362 -84563302 + MIR SINE MIR 78 148 -114 1161 235 189 44 chr1 197630371 197630848 -84562816 + MLT1H1 LTR MaLR 10 555 0 1345 278 49 41 chr1 197631240 197631393 -84562271 + L2 LINE L2 2617 2767 -546 570 231 15 37 chr1 197631393 197631527 -84562137 + MER94 DNA DNA 1 131 -3 1345 278 49 41 chr1 197631527 197632029 -84561635 + L2 LINE L2 2767 3294 -19 293 319 89 35 chr1 197633318 197633487 -84560177 - MIR SINE MIR -70 192 15 605 226 71 0 chr1 197633494 197633649 -84560015 + MIR SINE MIR 96 261 -1 233 217 0 58 chr1 197633898 197633967 -84559697 - L2 LINE L2 -95 3218 3154 466 221 6 12 chr1 197634418 197634581 -84559083 + (CCA)n Simple_repeat Simple_repeat 2 163 0 356 275 0 11 chr1 197634633 197634811 -84558853 + (CCA)n Simple_repeat Simple_repeat 2 177 0 180 0 0 0 chr1 197635376 197635396 -84558268 + (GA)n Simple_repeat Simple_repeat 2 21 0 393 291 74 46 chr1 197636119 197636294 -84557370 - MIR SINE MIR -70 192 13 431 319 28 0 chr1 197636376 197636520 -84557144 + (CATG)n Simple_repeat Simple_repeat 1 148 0 367 322 35 28 chr1 197637377 197637612 -84556052 + MIR SINE MIR 13 251 -11 952 292 82 43 chr1 197638910 197639376 -84554288 - MLT1L LTR MaLR -116 499 16 189 0 0 0 chr1 197640309 197640330 -84553334 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 585 286 56 5 chr1 197640684 197640880 -84552784 + MIR SINE MIR 57 262 0 216 265 0 0 chr1 197641141 197641190 -84552474 + GA-rich Low_complexity Low_complexity 1 49 0 497 246 22 29 chr1 197641640 197641778 -84551886 - MIR SINE MIR -75 187 51 181 188 0 0 chr1 197643949 197643981 -84549683 - MIR SINE MIR -5 257 226 220 328 37 8 chr1 197644170 197644304 -84549360 - L2 LINE L2 -300 2972 2835 224 317 24 0 chr1 197644739 197644821 -84548843 - L2 LINE L2 -78 3194 3111 25 31 0 0 chr1 197645987 197646019 -84547645 + AT_rich Low_complexity Low_complexity 1 32 0 1645 102 17 0 chr1 197646020 197646255 -84547409 - L1MA1 LINE L1 -4 6298 6060 3892 139 49 10 chr1 197646818 197647493 -84546171 - Tigger3b DNA MER2_type 0 1231 531 1058 162 0 0 chr1 197647494 197647661 -84546003 + FRAM SINE Alu 1 165 -11 3246 147 30 11 chr1 197647661 197648186 -84545478 - Tigger3b DNA MER2_type -695 536 2 1903 158 50 29 chr1 197649681 197650062 -84543602 + MLT1B LTR MaLR 2 390 0 253 262 12 0 chr1 197650431 197650515 -84543149 + MIR SINE MIR 173 257 -5 249 339 68 60 chr1 197650953 197651270 -84542394 + L2 LINE L2 2779 3105 -167 203 276 35 0 chr1 197651742 197651800 -84541864 + MIR SINE MIR 86 145 -63 180 333 0 15 chr1 197653906 197653972 -84539692 + MIR SINE MIR 72 136 -72 394 253 157 30 chr1 197654478 197654644 -84539020 - MIR SINE MIR -25 237 51 866 96 22 34 chr1 197655814 197655992 -84537672 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 237 311 203 17 chr1 197656067 197656244 -84537420 - MIR SINE MIR -5 257 48 216 97 0 0 chr1 197656734 197656765 -84536899 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 202 269 144 19 chr1 197657581 197657685 -84535979 + L2 LINE L2 3155 3271 -1 206 363 66 11 chr1 197658576 197658758 -84534906 - L2 LINE L2 -15 3298 3107 547 239 0 8 chr1 197659504 197659634 -84534030 + L2 LINE L2 3144 3272 0 186 43 0 0 chr1 197660031 197660054 -84533610 + (TC)n Simple_repeat Simple_repeat 2 24 0 557 295 29 0 chr1 197661317 197661490 -84532174 - MIR SINE MIR 0 262 85 2004 166 3 56 chr1 197661497 197661630 -84532034 - MER1B DNA MER1_type -2373 339 200 7347 46 3 0 chr1 197661630 197662689 -84530975 - L1PA7 LINE L1 0 6154 5093 2004 166 3 56 chr1 197662689 197662911 -84530753 - MER1B DNA MER1_type -2512 200 3 440 327 76 5 chr1 197663077 197663300 -84530364 + MIR SINE MIR 17 255 -7 189 171 0 0 chr1 197665290 197665325 -84528339 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 6384 108 10 0 chr1 197665412 197666900 -84526764 + L1PA11 LINE L1 4675 6172 -2 2592 56 3 0 chr1 197667147 197667452 -84526212 - AluY SINE Alu -5 306 1 367 244 13 76 chr1 197668159 197668384 -84525280 + L1MC5 LINE L1 7731 7941 -20 265 255 230 43 chr1 197670382 197670543 -84523121 - L3b LINE CR1 -183 1400 1210 216 0 0 0 chr1 197670550 197670574 -84523090 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 237 302 106 58 chr1 197670582 197670771 -84522893 - L2 LINE L2 0 3272 3075 343 291 45 0 chr1 197670809 197670919 -84522745 + L2 LINE L2 3158 3272 0 313 260 107 47 chr1 197672067 197672236 -84521428 - MIR SINE MIR -10 252 74 491 277 40 0 chr1 197672279 197672427 -84521237 - MIR SINE MIR -11 251 98 2214 132 0 0 chr1 197673282 197673634 -84520030 + AluSx SINE Alu 1 312 0 405 331 143 7 chr1 197673758 197674045 -84519619 + MLT1J2 LTR MaLR 64 389 -61 2092 194 46 107 chr1 197676449 197677143 -84516521 + MLT1E1 LTR MaLR 2 653 -1 241 162 29 0 chr1 197677173 197677241 -84516423 + CT-rich Low_complexity Low_complexity 3 72 0 286 259 203 7 chr1 197677312 197677455 -84516209 - L2 LINE L2 0 3272 3102 453 246 0 131 chr1 197677572 197677771 -84515893 - MER5B DNA MER1_type 0 178 6 746 313 58 11 chr1 197677784 197678194 -84515470 + LTR16A LTR ERVL 9 457 0 190 365 88 6 chr1 197678194 197678375 -84515289 - L2 LINE L2 -268 3004 2809 455 276 46 0 chr1 197679729 197679881 -84513783 - MIR SINE MIR -6 256 98 1471 197 36 42 chr1 197680257 197680617 -84513047 + MLT1B LTR MaLR 33 390 0 551 261 70 0 chr1 197681108 197681250 -84512414 + MIR SINE MIR 41 192 -70 1967 126 18 14 chr1 197681263 197681549 -84512115 + AluSx SINE Alu 1 287 -25 1824 190 26 34 chr1 197681886 197682270 -84511394 + MLT1B LTR MaLR 10 390 0 181 294 44 29 chr1 197682318 197682386 -84511278 - L2 LINE L2 0 3313 3245 231 281 52 10 chr1 197683310 197683406 -84510258 + L2 LINE L2 3206 3305 -8 2009 105 3 0 chr1 197683509 197683794 -84509870 + L1PA8 LINE L1 5887 6172 0 1601 219 97 67 chr1 197683851 197684377 -84509287 + MLT1F LTR MaLR 1 542 0 1827 165 0 21 chr1 197685447 197685738 -84507926 + AluJb SINE Alu 3 287 -25 180 0 0 0 chr1 197685739 197685759 -84507905 + (AAATG)n Simple_repeat Simple_repeat 1 20 0 215 348 62 18 chr1 197687452 197687564 -84506100 - L2 LINE L2 -10 3262 3146 309 247 37 111 chr1 197688229 197688419 -84505245 + MLT1K LTR MaLR 397 572 -16 262 300 11 30 chr1 197688514 197688624 -84505040 + MER5A DNA MER1_type 63 167 -11 388 260 0 0 chr1 197689384 197689480 -84504184 - MER5A DNA MER1_type -80 109 14 1803 219 68 27 chr1 197689534 197690019 -84503645 + MLT1D LTR MaLR 1 505 0 223 325 142 0 chr1 197690702 197690822 -84502842 - L2 LINE L2 -3 3269 3133 501 17 0 0 chr1 197692517 197692575 -84501089 + (GA)n Simple_repeat Simple_repeat 1 58 0 277 277 10 42 chr1 197693044 197693174 -84500490 + MER5B DNA MER1_type 28 164 -25 213 39 0 0 chr1 197693547 197693573 -84500091 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 812 280 17 8 chr1 197695412 197695651 -84498013 + MIR SINE MIR 12 252 -10 204 289 62 31 chr1 197695655 197695752 -84497912 + MIR3 SINE MIR 109 208 0 282 56 0 0 chr1 197696179 197696215 -84497449 + (TC)n Simple_repeat Simple_repeat 1 36 0 1755 112 0 4 chr1 197697817 197698067 -84495597 + L1PB1 LINE L1 5902 6150 -1 22 0 0 0 chr1 197698792 197698814 -84494850 + AT_rich Low_complexity Low_complexity 1 22 0 217 253 236 39 chr1 197699131 197699313 -84494351 + L2 LINE L2 2541 2758 -556 2740 103 3 8 chr1 197700476 197700853 -84492811 + THE1C LTR MaLR 1 375 0 188 333 13 13 chr1 197705204 197705282 -84488382 - L3 LINE CR1 -177 1400 1323 409 246 81 57 chr1 197705764 197705981 -84487683 - LTR16A1 LTR ERVL -176 274 54 297 285 73 22 chr1 197706400 197706537 -84487127 - L2 LINE L2 -1 3271 3128 2519 202 72 4 chr1 197708062 197708562 -84485102 - MLT1F LTR MaLR -8 534 1 392 252 88 27 chr1 197708664 197708811 -84484853 + MIR SINE MIR 51 206 -56 2182 117 58 17 chr1 197710259 197710619 -84483045 + THE1C LTR MaLR 1 375 0 287 269 54 0 chr1 197710853 197710925 -84482739 + L1ME4a LINE L1 5985 6052 -69 1691 69 0 43 chr1 197710925 197711184 -84482480 - AluY SINE Alu 0 311 91 287 269 54 0 chr1 197711184 197711241 -84482423 + L1ME4a LINE L1 6052 6121 0 2377 163 40 9 chr1 197711300 197711754 -84481910 + Charlie4a DNA MER1_type 1 468 -40 622 242 7 0 chr1 197711916 197712069 -84481595 - MIR SINE MIR -77 185 32 260 286 56 62 chr1 197714102 197714263 -84479401 - MER20B DNA MER1_type -594 189 30 305 267 164 38 chr1 197716423 197716685 -84476979 + L2 LINE L2 2805 3099 -173 422 192 0 0 chr1 197717372 197717450 -84476214 + MER116 DNA Mariner 1 78 -2 841 175 58 29 chr1 197718465 197718636 -84475028 + MER45A DNA AcHobo 1 176 -2 223 359 56 28 chr1 197719073 197719215 -84474449 - L2 LINE L2 0 3272 3127 335 102 0 0 chr1 197719324 197719373 -84474291 + U5 snRNA snRNA 1 49 -67 376 363 125 23 chr1 197719384 197720282 -84473382 - L2 LINE L2 -254 3018 2026 740 267 97 42 chr1 197720347 197720658 -84473006 + MLT1I LTR MaLR 82 409 0 256 352 125 23 chr1 197720684 197721036 -84472628 - L2 LINE L2 -1304 2010 1623 796 269 70 12 chr1 197721093 197721335 -84472329 - MIR SINE MIR 0 262 7 261 351 55 27 chr1 197722970 197723052 -84470612 - L2 LINE L2 -218 3054 2976 1133 48 30 0 chr1 197723052 197723220 -84470444 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 261 351 55 27 chr1 197723220 197723582 -84470082 - L2 LINE L2 -296 2976 2601 246 316 0 0 chr1 197724873 197724930 -84468734 + HAL1 LINE L1 3 59 -2448 1449 244 122 48 chr1 197724940 197725521 -84468143 + MLT1E3 LTR MaLR 1 624 0 3499 254 169 50 chr1 197725532 197727669 -84465995 + HAL1 LINE L1 90 2480 -27 254 318 47 16 chr1 197727943 197728072 -84465592 - MIR SINE MIR -50 212 80 299 224 0 10 chr1 197729259 197729357 -84464307 + (CA)n Simple_repeat Simple_repeat 2 98 0 180 0 0 0 chr1 197729844 197729864 -84463800 + (A)n Simple_repeat Simple_repeat 1 20 0 490 246 63 11 chr1 197730328 197730503 -84463161 - MIR3 SINE MIR -1 207 24 2190 221 57 61 chr1 197732285 197732877 -84460787 + MLT1E LTR MaLR 4 593 0 211 345 55 28 chr1 197732957 197733073 -84460591 - L3 LINE CR1 -37 1540 1418 6463 11 0 1 chr1 197733073 197733790 -84459874 + L1PA2 LINE L1 5440 6155 0 211 345 55 28 chr1 197733790 197733818 -84459846 - L3 LINE CR1 -159 1418 1392 443 298 95 16 chr1 197733829 197734071 -84459593 - MIR SINE MIR 0 262 2 338 299 73 37 chr1 197734071 197734231 -84459433 - L3 LINE CR1 -182 1395 1230 1864 161 39 12 chr1 197734283 197734613 -84459051 + L1MC1 LINE L1 5995 6333 0 830 174 19 6 chr1 197734656 197734817 -84458847 + L1MB5 LINE L1 5997 6159 -15 514 239 34 35 chr1 197735135 197735350 -84458314 - L1MB8 LINE L1 -329 5849 5634 1285 335 142 16 chr1 197735468 197736391 -84457273 - L3 LINE CR1 -538 1039 1 731 286 99 7 chr1 197741055 197741349 -84452315 + L1ME LINE L1 5499 5819 -302 249 256 143 36 chr1 197743144 197743312 -84450352 + MIR3 SINE MIR 21 206 -2 204 162 0 0 chr1 197745193 197745230 -84448434 - L2 LINE L2 0 3313 3277 180 310 0 0 chr1 197746113 197746200 -84447464 + CT-rich Low_complexity Low_complexity 2 88 0 483 286 168 23 chr1 197746828 197747048 -84446616 - MIR SINE MIR -4 258 7 189 107 0 0 chr1 197747741 197747769 -84445895 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr1 197748315 197748339 -84445325 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 237 221 0 39 chr1 197749845 197749922 -84443742 + A-rich Low_complexity Low_complexity 4 77 0 333 284 91 0 chr1 197750400 197750488 -84443176 - L2 LINE L2 -19 3253 3158 1402 208 138 22 chr1 197750508 197750869 -84442795 + MLT1I LTR MaLR 7 409 0 205 239 22 0 chr1 197750890 197750936 -84442728 - L2 LINE L2 -20 3293 3247 197 318 66 26 chr1 197751094 197751245 -84442419 - L2 LINE L2 -169 3103 2947 208 243 27 54 chr1 197752281 197752355 -84441309 + L2 LINE L2 3020 3091 -181 417 287 126 17 chr1 197753420 197753594 -84440070 + MIR SINE MIR 70 262 0 704 142 0 7 chr1 197754614 197754755 -84438909 + (TTCC)n Simple_repeat Simple_repeat 4 143 0 192 238 86 67 chr1 197755752 197755857 -84437807 + L2 LINE L2 3166 3272 0 475 240 19 0 chr1 197755961 197756065 -84437599 + MARNA DNA Mariner 132 237 -349 1484 186 72 62 chr1 197758224 197758612 -84435052 + MSTD LTR MaLR 5 396 0 194 207 35 0 chr1 197759491 197759549 -84434115 + MIR SINE MIR 79 138 -124 1971 191 30 55 chr1 197759575 197760047 -84433617 + MLT1C LTR MaLR 8 467 0 289 229 26 182 chr1 197760559 197760790 -84432874 - MIR SINE MIR -19 243 49 484 301 82 10 chr1 197760892 197761117 -84432547 - MIR SINE MIR -19 243 5 206 188 12 38 chr1 197761259 197761339 -84432325 + CT-rich Low_complexity Low_complexity 4 81 0 1738 96 0 22 chr1 197761880 197762110 -84431554 - AluSq SINE Alu -88 225 1 403 285 77 41 chr1 197762793 197763001 -84430663 + MIR SINE MIR 4 225 -37 514 251 28 34 chr1 197763129 197763308 -84430356 - MER5B DNA MER1_type 0 178 1 184 366 39 13 chr1 197763425 197763578 -84430086 + L3 LINE CR1 1149 1305 -272 396 323 8 0 chr1 197763606 197763739 -84429925 + L3 LINE CR1 1397 1530 -47 316 256 26 45 chr1 197764229 197764370 -84429294 - MIR SINE MIR -57 151 20 638 149 7 91 chr1 197765056 197765113 -84428551 + MER96B DNA MER1_type? 122 182 -235 3246 62 0 0 chr1 197765113 197765514 -84428150 + L1PA7 LINE L1 5754 6154 0 638 149 7 91 chr1 197765514 197765610 -84428054 + MER96B DNA MER1_type? 182 262 -155 632 250 57 2 chr1 197765611 197765806 -84427858 + L1MA9 LINE L1 6083 6293 -7 817 184 12 6 chr1 197765806 197765969 -84427695 - MER96B DNA MER1_type? -253 164 1 188 351 96 11 chr1 197765972 197766066 -84427598 - L2 LINE L2 -44 3228 3127 977 240 114 25 chr1 197767230 197767588 -84426076 + MLT1I LTR MaLR 14 403 -6 416 281 68 0 chr1 197767603 197767749 -84425915 + MIR SINE MIR 97 252 -10 255 194 41 0 chr1 197768186 197768256 -84425408 - MIR SINE MIR -69 139 65 1898 165 0 7 chr1 197770079 197770382 -84423282 + AluJo SINE Alu 3 303 -9 2219 113 0 7 chr1 197770387 197770680 -84422984 + AluSx SINE Alu 1 291 -21 217 313 16 0 chr1 197770784 197770848 -84422816 - MIR3 SINE MIR -15 193 129 620 213 37 18 chr1 197771289 197771453 -84422211 - MIR SINE MIR 0 262 96 336 266 195 13 chr1 197771697 197771851 -84421813 + Charlie8 DNA MER1_type 99 280 -2137 214 273 0 0 chr1 197772628 197772683 -84420981 - MIR SINE MIR -51 211 157 185 302 0 0 chr1 197773825 197773878 -84419786 - MIR SINE MIR -81 127 75 198 283 61 61 chr1 197774014 197774212 -84419452 + L3 LINE CR1 649 846 -731 728 215 124 34 chr1 197775551 197775760 -84417904 + MIR SINE MIR 10 237 -25 689 286 5 10 chr1 197776083 197776279 -84417385 + MER91A DNA MER1_type 2 196 0 201 319 88 21 chr1 197776927 197777113 -84416551 + MIR SINE MIR 10 205 -57 202 269 0 0 chr1 197777148 197777200 -84416464 - L2 LINE L2 -8 3264 3213 235 267 69 20 chr1 197777213 197777314 -84416350 + MIR3 SINE MIR 98 203 -5 261 0 0 0 chr1 197777708 197777737 -84415927 + (A)n Simple_repeat Simple_repeat 1 29 0 673 233 111 12 chr1 197777793 197777965 -84415699 - MER5A DNA MER1_type 0 189 1 192 271 43 29 chr1 197778637 197778707 -84414957 - MIR SINE MIR -102 106 36 545 278 82 16 chr1 197780677 197780871 -84412793 + MIR SINE MIR 20 226 -36 453 253 40 40 chr1 197780914 197781088 -84412576 - L2 LINE L2 0 3313 3140 288 274 39 20 chr1 197781988 197782090 -84411574 + MIR3 SINE MIR 67 170 -38 529 298 127 37 chr1 197782161 197782570 -84411094 + LTR16A1 LTR ERVL 12 457 0 378 348 26 35 chr1 197783227 197783454 -84410210 + MIR SINE MIR 34 258 -4 428 293 87 41 chr1 197783828 197784418 -84409246 + L1ME3A LINE L1 4929 5551 -619 313 321 63 54 chr1 197784451 197784784 -84408880 + L1ME3A LINE L1 5621 5956 -214 2634 197 60 13 chr1 197785700 197786304 -84407360 + MER92B LTR ERV1 5 636 0 1820 163 0 10 chr1 197786844 197787138 -84406526 - AluJo SINE Alu -21 291 1 199 374 99 8 chr1 197787210 197787341 -84406323 - L2 LINE L2 -1 3271 3129 274 287 148 0 chr1 197788354 197788462 -84405202 - L2 LINE L2 -2 3270 3147 197 286 0 0 chr1 197788482 197788538 -84405126 + L2 LINE L2 3217 3272 0 471 183 0 12 chr1 197788854 197788936 -84404728 - MER63 DNA MER1_type -299 763 683 565 268 43 18 chr1 197789424 197789588 -84404076 + MIR SINE MIR 21 188 -74 276 192 39 0 chr1 197789929 197789981 -84403683 - LTR39 LTR ERV1 -729 54 1 186 43 0 0 chr1 197790557 197790580 -84403084 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 203 264 115 46 chr1 197792215 197792302 -84401362 + MIR3 SINE MIR 1 93 -115 444 273 86 0 chr1 197792334 197792462 -84401202 + MIR3 SINE MIR 63 201 -7 432 214 20 0 chr1 197793053 197793151 -84400513 + MER5A DNA MER1_type 10 109 -80 346 259 52 9 chr1 197793373 197793489 -84400175 - MIR SINE MIR -110 152 32 318 285 26 53 chr1 197795102 197795253 -84398411 - MIR3 SINE MIR -16 192 46 367 167 13 13 chr1 197797022 197797100 -84396564 + MIR SINE MIR 101 178 -84 207 315 152 22 chr1 197797165 197797365 -84396299 + L2 LINE L2 3002 3249 -64 639 318 20 4 chr1 197797365 197797620 -84396044 + MIR SINE MIR 4 262 0 207 315 152 22 chr1 197797620 197797695 -84395969 + L2 LINE L2 3249 3313 0 358 273 78 89 chr1 197797886 197798157 -84395507 + L2 LINE L2 2809 3076 -196 2089 190 49 7 chr1 197798157 197798605 -84395059 - MLT1C LTR MaLR 0 467 1 237 315 117 0 chr1 197799003 197799165 -84394499 + L2 LINE L2 2809 2989 -324 289 285 111 0 chr1 197799266 197799410 -84394254 - MIR3 SINE MIR -10 198 39 1776 206 19 41 chr1 197799842 197800259 -84393405 + MLT1C LTR MaLR 60 467 0 2627 83 3 28 chr1 197801391 197801754 -84391910 + THE1A LTR MaLR 2 355 0 1165 212 105 41 chr1 197802207 197802645 -84391019 + MLT1C LTR MaLR 1 467 0 227 316 187 18 chr1 197802986 197803157 -84390507 + MIR SINE MIR 50 249 -13 493 277 45 11 chr1 197803508 197803685 -84389979 - MER5A DNA MER1_type 0 189 7 1124 82 0 25 chr1 197803871 197804029 -84389635 + L1PA4 LINE L1 5999 6152 -3 180 308 0 0 chr1 197805945 197805997 -84387667 - L2 LINE L2 -19 3253 3202 227 261 0 0 chr1 197806045 197806091 -84387573 + polypyrimidine Low_complexity Low_complexity 2 47 0 288 274 19 27 chr1 197806688 197806866 -84386798 + L1ME LINE L1 5648 5822 -299 1412 98 74 23 chr1 197806885 197807100 -84386564 - MER30 DNA MER1_type 0 230 5 325 101 14 14 chr1 197807185 197807254 -84386410 + (TG)n Simple_repeat Simple_repeat 2 70 0 372 297 174 10 chr1 197808151 197808346 -84385318 - MIR SINE MIR -2 260 34 181 358 64 18 chr1 197808510 197808619 -84385045 + L2 LINE L2 2910 3023 -249 274 340 168 5 chr1 197809401 197809498 -84384166 + MIR SINE MIR 28 108 -154 303 28 0 0 chr1 197809498 197809534 -84384130 + (ATG)n Simple_repeat Simple_repeat 2 37 0 274 340 168 5 chr1 197809534 197809633 -84384031 + MIR SINE MIR 108 256 -6 289 340 38 66 chr1 197810114 197810326 -84383338 - MIR3 SINE MIR 0 208 3 192 312 140 0 chr1 197811769 197811862 -84381802 - MIR SINE MIR 0 262 157 948 259 106 7 chr1 197814425 197814699 -84378965 + L2 LINE L2 2425 2725 -589 1347 170 59 5 chr1 197814699 197815101 -84378563 + MER84 LTR ERVI 1 507 0 773 262 211 29 chr1 197815101 197815581 -84378083 + L2 LINE L2 2721 3313 0 195 204 0 0 chr1 197816271 197816315 -84377349 + (TA)n Simple_repeat Simple_repeat 2 45 0 206 156 22 0 chr1 197816815 197816860 -84376804 + GA-rich Low_complexity Low_complexity 2 47 0 272 345 72 68 chr1 197817415 197817679 -84375985 - L2 LINE L2 -5 3267 3003 266 340 165 20 chr1 197817787 197818084 -84375580 - L2 LINE L2 -337 2977 2638 1884 144 4 0 chr1 197818162 197818440 -84375224 + AluJo SINE Alu 9 287 -25 223 289 53 50 chr1 197818810 197818990 -84374674 + MIR SINE MIR 3 183 -62 234 351 13 0 chr1 197820174 197820251 -84373413 + L2 LINE L2 3235 3312 -1 186 200 29 0 chr1 197822073 197822108 -84371556 - MIR3 SINE MIR -22 186 151 242 253 25 124 chr1 197822165 197822367 -84371297 + Charlie8 DNA MER1_type 139 1418 -999 356 255 32 0 chr1 197822411 197822505 -84371159 - MIR SINE MIR -90 118 22 597 283 151 41 chr1 197824274 197825089 -84368575 + L2 LINE L2 2372 3291 -22 1602 134 7 39 chr1 197825632 197825915 -84367749 + AluSx SINE Alu 39 312 0 270 311 0 47 chr1 197826176 197826324 -84367340 + (CACCC)n Simple_repeat Simple_repeat 3 143 0 605 156 0 43 chr1 197826567 197826753 -84366911 + CT-rich Low_complexity Low_complexity 3 180 0 187 243 0 0 chr1 197826951 197826988 -84366676 - L2 LINE L2 -8 3305 3269 420 287 8 25 chr1 197827316 197827438 -84366226 - MIR SINE MIR -61 201 82 205 295 90 13 chr1 197827437 197827515 -84366149 - L2 LINE L2 0 3313 3230 * 1263 173 56 53 chr1 197828355 197828678 -84364986 - MER33 DNA MER1_type 0 324 1 29 0 0 0 chr1 197828722 197828751 -84364913 + AT_rich Low_complexity Low_complexity 1 29 0 383 297 8 29 chr1 197828785 197829201 -84364463 + CT-rich Low_complexity Low_complexity 1 407 0 28 0 0 0 chr1 197829668 197829696 -84363968 + AT_rich Low_complexity Low_complexity 1 28 0 866 287 75 21 chr1 197829802 197830231 -84363433 + L1MC/D LINE L1 3587 4038 -2108 240 159 57 0 chr1 197830249 197830337 -84363327 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 353 268 61 54 chr1 197830559 197830608 -84363056 + L1MC/D LINE L1 5255 5302 -940 2036 125 171 11 chr1 197830608 197830977 -84362687 + MSTA LTR MaLR 1 428 0 353 268 61 54 chr1 197830977 197831311 -84362353 + L1MC/D LINE L1 5302 5659 -583 2353 52 26 13 chr1 197832849 197833154 -84360510 - AluY SINE Alu -2 309 1 546 243 107 17 chr1 197833496 197833673 -84359991 - MIR SINE MIR -68 194 2 252 316 71 0 chr1 197834069 197834167 -84359497 + MER91A DNA MER1_type 18 122 -74 474 18 0 0 chr1 197834274 197834329 -84359335 + (TG)n Simple_repeat Simple_repeat 1 55 0 6126 28 30 0 chr1 197835315 197835983 -84357681 + L1PA4 LINE L1 5405 6098 -57 291 54 0 0 chr1 197835983 197836020 -84357644 + (TA)n Simple_repeat Simple_repeat 1 37 0 6126 28 30 0 chr1 197836020 197836078 -84357586 + L1PA4 LINE L1 6098 6153 -2 180 325 51 60 chr1 197837781 197837898 -84355766 + MIR SINE MIR 118 233 -29 258 222 42 28 chr1 197838222 197838294 -84355370 + MIR3 SINE MIR 86 158 -50 282 211 42 42 chr1 197838580 197838651 -84355013 + MIR SINE MIR 73 143 -65 376 251 198 48 chr1 197839342 197839529 -84354135 + MLT1G LTR MaLR 313 562 -28 224 297 23 23 chr1 197839829 197839957 -84353707 + CT-rich Low_complexity Low_complexity 1 128 0 332 248 124 0 chr1 197841099 197841204 -84352460 + MIR SINE MIR 132 249 -13 721 336 100 43 chr1 197841595 197842262 -84351402 + L3 LINE CR1 857 1561 -16 206 239 28 70 chr1 197843350 197843421 -84350243 + MIR3 SINE MIR 137 204 -4 215 333 64 0 chr1 197843805 197843883 -84349781 - L2 LINE L2 0 3272 3190 439 239 44 9 chr1 197844230 197844343 -84349321 - MIR SINE MIR -58 204 88 1501 175 11 25 chr1 197844899 197845185 -84348479 - AluJo SINE Alu -30 282 1 316 287 18 37 chr1 197845193 197845357 -84348307 + L2 LINE L2 2933 3093 -179 510 323 172 0 chr1 197845579 197845765 -84347899 - L2 LINE L2 -2 3270 3053 569 193 166 0 chr1 197846065 197846205 -84347459 + MER5A DNA MER1_type 4 166 -23 411 356 63 5 chr1 197846789 197847011 -84346653 - MIR SINE MIR -1 261 27 203 338 54 0 chr1 197848641 197848715 -84344949 - L2 LINE L2 0 3313 3236 307 259 202 74 chr1 197848883 197849358 -84344306 - L2 LINE L2 -448 2866 2331 630 161 37 43 chr1 197849717 197849879 -84343785 - MER53 DNA DNA -28 161 1 351 0 0 0 chr1 197850044 197850083 -84343581 + (TG)n Simple_repeat Simple_repeat 2 40 0 449 262 180 0 chr1 197850198 197850370 -84343294 + MIR SINE MIR 49 251 -11 197 286 53 45 chr1 197851277 197851410 -84342254 + L2 LINE L2 3179 3312 -1 239 388 39 0 chr1 197851686 197851815 -84341849 - L2 LINE L2 0 3272 3139 201 291 0 0 chr1 197854953 197855008 -84338656 - MIR SINE MIR -120 88 34 338 296 37 38 chr1 197855036 197855214 -84338450 - MIR SINE MIR -63 145 16 284 314 149 8 chr1 197856431 197856552 -84337112 + MER5A DNA MER1_type 39 176 -2 189 362 9 60 chr1 197857508 197857624 -84336040 - L2 LINE L2 -17 3255 3146 207 296 9 26 chr1 197858519 197858634 -84335030 + GA-rich Low_complexity Low_complexity 2 114 0 703 206 146 20 chr1 197858984 197859183 -84334481 + MIR SINE MIR 14 237 -25 291 319 141 0 chr1 197860386 197860549 -84333115 - MIR SINE MIR 0 262 77 439 298 21 57 chr1 197862352 197862493 -84331171 - L2 LINE L2 0 3272 3137 333 315 55 42 chr1 197862593 197862758 -84330906 - MIR3 SINE MIR -40 168 2 432 272 38 6 chr1 197862854 197863012 -84330652 - MER103 DNA DNA -1 165 3 210 71 0 0 chr1 197864176 197864204 -84329460 + (CA)n Simple_repeat Simple_repeat 1 28 0 3141 148 15 13 chr1 197864615 197865156 -84328508 - L1PA16 LINE L1 -3 6163 5622 209 265 0 0 chr1 197866557 197866606 -84327058 + L2 LINE L2 3265 3313 0 447 310 55 7 chr1 197867045 197867190 -84326474 - L2 LINE L2 -2 3270 3119 306 273 102 31 chr1 197868081 197868209 -84325455 - MIR SINE MIR -56 206 70 886 299 136 33 chr1 197868329 197869246 -84324418 - L2 LINE L2 -12 3301 2284 203 360 111 0 chr1 197869292 197869517 -84324147 - L2 LINE L2 -1188 2126 1877 * 632 230 46 7 chr1 197869476 197869628 -84324036 - MIR SINE MIR 0 262 105 676 186 26 83 chr1 197871069 197871262 -84322402 - L2 LINE L2 0 3313 3132 272 178 0 0 chr1 197871834 197871879 -84321785 + 5S rRNA rRNA 1 45 -76 490 315 47 75 chr1 197872144 197872573 -84321091 + L2 LINE L2 2116 2532 -782 255 352 99 57 chr1 197872589 197872718 -84320946 + L2 LINE L2 2645 2767 -505 2016 157 37 8 chr1 197872718 197873095 -84320569 + MLT1B LTR MaLR 3 390 0 255 352 99 57 chr1 197873095 197873127 -84320537 + L2 LINE L2 2767 2796 -476 2690 197 72 0 chr1 197873127 197873655 -84320009 + MLT1F1 LTR MaLR 1 566 -1 255 352 99 57 chr1 197873655 197874048 -84319616 + L2 LINE L2 2796 3224 -48 507 118 0 0 chr1 197874071 197874156 -84319508 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 243 0 0 0 chr1 197874350 197874377 -84319287 + (T)n Simple_repeat Simple_repeat 1 27 0 1954 103 4 0 chr1 197874762 197875033 -84318631 + AluSp SINE Alu 33 304 -9 253 289 24 24 chr1 197875953 197876036 -84317628 - MIR SINE MIR -72 190 108 1679 255 81 81 chr1 197876286 197876690 -84316974 - L2 LINE L2 -97 3216 2813 1773 113 73 4 chr1 197876690 197876965 -84316699 + AluSq SINE Alu 1 294 -19 1679 255 81 81 chr1 197876965 197877427 -84316237 - L2 LINE L2 -500 2813 2357 1257 257 86 26 chr1 197877432 197877922 -84315742 - L2 LINE L2 -2013 1301 783 665 275 98 41 chr1 197878078 197878394 -84315270 - LTR16B LTR ERVL 0 464 131 248 0 31 0 chr1 197879518 197879550 -84314114 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 436 219 210 0 chr1 197879900 197880019 -84313645 + MER5A DNA MER1_type 40 183 -6 210 263 18 0 chr1 197881171 197881228 -84312436 + GA-rich Low_complexity Low_complexity 2 59 0 22 35 0 0 chr1 197881262 197881291 -84312373 + AT_rich Low_complexity Low_complexity 1 29 0 383 209 53 44 chr1 197881750 197881936 -84311728 + L1MC/D LINE L1 5279 5466 -750 1022 141 0 27 chr1 197882184 197882368 -84311296 + L1MB3 LINE L1 5997 6175 -8 335 138 0 15 chr1 197883688 197883753 -84309911 + (TG)n Simple_repeat Simple_repeat 2 65 0 317 273 125 0 chr1 197883815 197883903 -84309761 + L3 LINE CR1 412 510 -1067 241 368 11 0 chr1 197883942 197884037 -84309627 + MIR3 SINE MIR 108 203 -5 642 329 65 61 chr1 197884091 197884617 -84309047 + L3 LINE CR1 656 1183 -394 524 299 69 20 chr1 197884713 197884917 -84308747 - L3 LINE CR1 -107 1470 1257 24 53 0 0 chr1 197885932 197885970 -84307694 + AT_rich Low_complexity Low_complexity 1 38 0 426 20 0 0 chr1 197886141 197886192 -84307472 + (TG)n Simple_repeat Simple_repeat 2 52 0 210 286 32 16 chr1 197886899 197886962 -84306702 - L3b LINE CR1 -89 1494 1431 435 38 0 0 chr1 197887426 197887479 -84306185 + (CA)n Simple_repeat Simple_repeat 1 53 0 605 311 162 51 chr1 197887928 197888712 -84304952 - L2 LINE L2 -5 3267 2131 1829 243 90 25 chr1 197889253 197890142 -84303522 - L2 LINE L2 -129 3184 2233 736 228 23 6 chr1 197890228 197890399 -84303265 - MIR SINE MIR -16 246 73 199 321 66 77 chr1 197890453 197890649 -84303015 - L2 LINE L2 -614 2700 2507 2303 138 77 3 chr1 197890654 197891016 -84302648 + MSTB LTR MaLR 1 389 -37 378 247 41 0 chr1 197893161 197893258 -84300406 + MER5A DNA MER1_type 4 104 -85 470 310 47 12 chr1 197894765 197894936 -84298728 + MER5B DNA MER1_type 2 178 0 229 320 68 61 chr1 197895258 197895405 -84298259 + MIR SINE MIR 21 168 -94 1168 111 6 0 chr1 197895411 197895582 -84298082 + L1PA16 LINE L1 5986 6157 -9 318 305 38 9 chr1 197896883 197896988 -84296676 - MIR SINE MIR -81 127 20 406 241 202 8 chr1 197897545 197897739 -84295925 + MIR SINE MIR 23 256 -6 1355 228 23 74 chr1 197898202 197898592 -84295072 + MLT1A2 LTR MaLR 1 370 -4 188 286 0 0 chr1 197899009 197899058 -84294606 + L2 LINE L2 3001 3049 -223 327 174 29 14 chr1 197899079 197899148 -84294516 - MIR3 SINE MIR -30 178 109 708 261 107 66 chr1 197899218 197899536 -84294128 + L2 LINE L2 2970 3300 -13 1706 197 0 7 chr1 197900589 197900899 -84292765 - AluJb SINE Alu -4 308 1 1983 129 0 0 chr1 197900942 197901222 -84292442 - AluSg SINE Alu -30 280 1 434 370 0 0 chr1 197901516 197901654 -84292010 - L2 LINE L2 -1 3271 3134 1785 135 24 21 chr1 197901733 197902021 -84291643 + AluSx SINE Alu 12 300 -12 26 74 0 0 chr1 197902057 197902111 -84291553 + AT_rich Low_complexity Low_complexity 1 54 0 379 306 66 66 chr1 197902111 197902265 -84291399 + L1ME3A LINE L1 5869 6025 -145 3013 112 5 2 chr1 197902265 197902692 -84290972 - MSTA LTR MaLR 0 428 1 379 306 66 66 chr1 197902692 197902838 -84290826 + L1ME3A LINE L1 6024 6169 -1 474 314 83 24 chr1 197902890 197903294 -84290370 - L2 LINE L2 -196 3076 2653 638 209 35 9 chr1 197903299 197903414 -84290250 + MLT1A1 LTR MaLR 170 287 -78 239 353 59 13 chr1 197903764 197903917 -84289747 - L2 LINE L2 -657 2657 2498 210 192 192 26 chr1 197903925 197904003 -84289661 + L2 LINE L2 3180 3270 -43 26 30 0 0 chr1 197904900 197904933 -84288731 + AT_rich Low_complexity Low_complexity 1 33 0 2280 309 113 7 chr1 197905438 197906517 -84287147 - L2 LINE L2 -1340 1974 782 248 250 18 0 chr1 197906924 197906980 -84286684 - MIR SINE MIR -6 256 200 26 30 0 0 chr1 197907300 197907333 -84286331 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr1 197907547 197907569 -84286095 + (TC)n Simple_repeat Simple_repeat 2 23 0 770 201 14 0 chr1 197907576 197907720 -84285944 - FRAM SINE Alu -26 150 5 180 111 0 0 chr1 197907726 197907753 -84285911 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 519 334 67 67 chr1 197908272 197908676 -84284988 + L2 LINE L2 2860 3263 -9 770 251 120 22 chr1 197908705 197908972 -84284692 - L2 LINE L2 -1 3312 3020 295 286 46 86 chr1 197909407 197909582 -84284082 + MIR SINE MIR 51 218 -44 462 327 125 0 chr1 197909619 197909827 -84283837 - MIR SINE MIR -6 256 23 667 278 104 17 chr1 197910799 197911050 -84282614 + MIR SINE MIR 6 262 0 639 250 33 38 chr1 197912407 197912591 -84281073 - MIR SINE MIR -30 232 50 209 286 18 0 chr1 197914295 197914351 -84279313 - MIR SINE MIR -34 228 172 2347 72 0 0 chr1 197914372 197914664 -84279000 + AluY SINE Alu 1 292 -19 1453 189 0 30 chr1 197914884 197915185 -84278479 + AluJo SINE Alu 21 312 0 377 198 38 57 chr1 197915219 197915325 -84278339 + MIR SINE MIR 39 142 -120 330 173 15 218 chr1 197915380 197915582 -84278082 + MIR SINE MIR 97 257 -5 2352 153 25 8 chr1 197916390 197916783 -84276881 + L1MB3 LINE L1 5732 6131 -52 342 115 0 0 chr1 197917613 197917665 -84275999 + (CA)n Simple_repeat Simple_repeat 1 52 0 476 222 198 0 chr1 197918403 197918565 -84275099 + L1ME2 LINE L1 5965 6158 -6 288 0 0 0 chr1 197921096 197921128 -84272536 + (CA)n Simple_repeat Simple_repeat 2 33 0 438 101 0 0 chr1 197921762 197921831 -84271833 + (TC)n Simple_repeat Simple_repeat 2 70 0 244 286 113 68 chr1 197922549 197922682 -84270982 + MIR SINE MIR 53 191 -71 263 317 0 0 chr1 197922683 197922765 -84270899 - L3 LINE CR1 -1 1576 1495 988 259 28 16 chr1 197922772 197923027 -84270637 - MIR SINE MIR 0 262 5 431 320 45 69 chr1 197923567 197923858 -84269806 - L2 LINE L2 -74 3198 2915 417 277 30 43 chr1 197923861 197924039 -84269625 - MIR SINE MIR -23 185 6 195 237 72 82 chr1 197924367 197924464 -84269200 - L2 LINE L2 -181 3091 2996 342 304 130 26 chr1 197924611 197924841 -84268823 - L2 LINE L2 -906 2408 2155 1784 132 3 24 chr1 197925130 197925449 -84268215 - AluSx SINE Alu 0 313 1 323 208 0 10 chr1 197926199 197926295 -84267369 + GA-rich Low_complexity Low_complexity 2 96 0 300 317 33 0 chr1 197926981 197927101 -84266563 + L3 LINE CR1 1446 1569 -8 843 304 104 36 chr1 197927817 197928202 -84265462 + MLT1K LTR MaLR 148 558 -30 199 288 98 65 chr1 197929137 197929290 -84264374 - MIR3 SINE MIR -40 168 11 1445 174 61 69 chr1 197929589 197929950 -84263714 + MLT1A1 LTR MaLR 8 365 0 425 262 105 86 chr1 197930096 197930233 -84263431 + MIR SINE MIR 4 141 -121 778 176 0 131 chr1 197930233 197930432 -84263232 + FAM SINE Alu 2 174 -1 425 262 105 86 chr1 197930432 197930557 -84263107 + MIR SINE MIR 141 262 0 226 348 22 11 chr1 197930796 197930888 -84262776 + MIR SINE MIR 48 140 -122 612 246 129 19 chr1 197931035 197931291 -84262373 + L2 LINE L2 3014 3297 -16 372 240 128 24 chr1 197931421 197931546 -84262118 + MIR SINE MIR 111 248 -14 200 229 148 0 chr1 197931819 197931880 -84261784 + MER91B DNA MER1_type 99 168 -22 2083 93 6 35 chr1 197932008 197932320 -84261344 - AluSx SINE Alu -9 303 1 207 100 0 0 chr1 197933113 197933143 -84260521 + (T)n Simple_repeat Simple_repeat 1 30 0 257 169 0 77 chr1 197933641 197933706 -84259958 - MIR SINE MIR -19 243 184 517 252 0 58 chr1 197933882 197934021 -84259643 - MIR3 SINE MIR -1 207 77 623 176 34 8 chr1 197934097 197934216 -84259448 - FLAM_A SINE Alu -9 124 3 210 291 220 28 chr1 197934566 197934707 -84258957 - MIR3 SINE MIR -6 202 35 25 90 0 0 chr1 197935021 197935088 -84258576 + AT_rich Low_complexity Low_complexity 1 67 0 247 262 76 142 chr1 197935184 197935459 -84258205 - MIR SINE MIR -1 261 5 2174 101 0 7 chr1 197936470 197936777 -84256887 - AluSc SINE Alu -2 307 3 285 75 0 0 chr1 197936985 197937025 -84256639 + (TG)n Simple_repeat Simple_repeat 2 41 0 1650 224 72 21 chr1 197937518 197937951 -84255713 - MLT1C LTR MaLR -8 459 5 306 0 0 0 chr1 197938190 197938224 -84255440 + (TG)n Simple_repeat Simple_repeat 2 35 0 2052 165 3 0 chr1 197940244 197940584 -84253080 - L1MC1 LINE L1 -2 6331 5991 1334 233 66 11 chr1 197940864 197941212 -84252452 + MLT1C LTR MaLR 99 465 -2 480 263 124 7 chr1 197942258 197942395 -84251269 - MIR3 SINE MIR -38 170 18 898 239 101 56 chr1 197942848 197943274 -84250390 - MLT1J1 LTR MaLR 0 446 2 881 162 0 17 chr1 197943544 197943723 -84249941 + (ATGGTG)n Simple_repeat Simple_repeat 5 180 0 668 189 7 0 chr1 197943725 197943873 -84249791 + (TGG)n Simple_repeat Simple_repeat 1 149 0 1566 137 149 36 chr1 197944740 197945076 -84248588 + THE1C LTR MaLR 1 374 -1 1697 161 34 0 chr1 197945293 197945584 -84248080 + AluJb SINE Alu 3 303 -9 199 283 0 17 chr1 197945712 197945772 -84247892 + MIR SINE MIR 108 166 -96 1602 191 3 3 chr1 197945826 197946125 -84247539 + AluJo SINE Alu 1 299 -13 224 294 15 0 chr1 197947445 197947513 -84246151 + L3b LINE CR1 1320 1388 -195 504 72 0 0 chr1 197947583 197947652 -84246012 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 1400 214 9 35 chr1 197947660 197947977 -84245687 - AluJo SINE Alu -3 309 1 197 305 114 23 chr1 197948024 197948155 -84245509 + L2 LINE L2 2596 2738 -576 412 263 53 75 chr1 197948198 197948426 -84245238 + L2 LINE L2 2873 3095 -177 251 350 50 8 chr1 197949696 197949816 -84243848 + L2 LINE L2 2702 2826 -488 328 278 104 21 chr1 197949822 197949938 -84243726 - L2 LINE L2 -3 3269 3137 1355 233 32 40 chr1 197949938 197950338 -84243326 + MLT2C1 LTR ERVL 1 397 0 328 278 104 21 chr1 197950338 197950365 -84243299 - L2 LINE L2 -135 3137 3114 606 264 93 6 chr1 197950406 197950602 -84243062 - MIR SINE MIR -17 245 34 214 286 231 0 chr1 197950654 197950745 -84242919 + MIR3 SINE MIR 79 190 -18 1461 181 0 38 chr1 197950856 197951327 -84242337 + AluJb SINE Alu 1 460 0 792 100 0 0 chr1 197951327 197951447 -84242217 + (GGA)n Simple_repeat Simple_repeat 2 121 0 2260 93 0 0 chr1 197952356 197952657 -84241007 + AluSg SINE Alu 1 301 -9 383 133 8 25 chr1 197953017 197953118 -84240546 + L1MA2 LINE L1 6053 6158 -146 3014 188 0 24 chr1 197953118 197953624 -84240040 + L1PA13 LINE L1 1104 1597 -5190 2976 160 1 3 chr1 197953724 197954327 -84239337 + L1PA13 LINE L1 1837 2449 -4348 10922 177 10 42 chr1 197954327 197956624 -84237040 + L1PA13 LINE L1 3212 5435 -1362 6165 96 25 6 chr1 197956676 197958055 -84235609 + L1PA13 LINE L1 5412 6814 0 1011 108 32 0 chr1 197958055 197958213 -84235451 + L1MA3 LINE L1 6143 6305 0 21 0 0 0 chr1 197958216 197958237 -84235427 + AT_rich Low_complexity Low_complexity 1 21 0 488 206 21 0 chr1 197959685 197959782 -84233882 + MER5A DNA MER1_type 7 105 -84 340 299 11 0 chr1 197959869 197959956 -84233708 + L2 LINE L2 3225 3312 -1 246 252 8 134 chr1 197962041 197962168 -84231496 - MER5A DNA MER1_type 0 189 79 288 311 78 0 chr1 197962208 197962298 -84231366 + L2 LINE L2 3155 3251 -21 370 258 75 0 chr1 197963740 197963860 -84229804 + MIR SINE MIR 124 252 -10 192 125 0 0 chr1 197963874 197963906 -84229758 + (ATG)n Simple_repeat Simple_repeat 2 33 0 482 329 168 40 chr1 197964262 197964660 -84229004 + L2 LINE L2 2809 3257 -15 943 263 24 4 chr1 197965383 197965634 -84228030 - MIR SINE MIR -5 257 2 264 207 24 37 chr1 197965977 197966059 -84227605 + MIR SINE MIR 139 219 -43 219 313 38 12 chr1 197966091 197966171 -84227493 - MIR SINE MIR -153 109 28 201 196 18 36 chr1 197966313 197966369 -84227295 + (TG)n Simple_repeat Simple_repeat 1 55 0 194 227 0 23 chr1 197966538 197966582 -84227082 + L2 LINE L2 3216 3258 -14 317 296 34 80 chr1 197967623 197967887 -84225777 + L2 LINE L2 2690 2941 -373 204 360 76 17 chr1 197970949 197971121 -84222543 - L2 LINE L2 -906 2408 2227 396 138 0 0 chr1 197971636 197971694 -84221970 - MLT1H LTR MaLR 0 549 492 1236 158 8 62 chr1 197971698 197971938 -84221726 - MLT2D LTR ERVL 0 414 188 24 0 0 0 chr1 197971938 197971962 -84221702 + AT_rich Low_complexity Low_complexity 1 24 0 1532 215 3 3 chr1 197971962 197972250 -84221414 - AluJo SINE Alu -24 288 1 980 141 0 0 chr1 197972250 197972385 -84221279 - AluJo SINE Alu -177 135 1 992 146 97 0 chr1 197972390 197972575 -84221089 - MLT2D LTR ERVL -211 203 1 1234 239 132 11 chr1 197972653 197973009 -84220655 - MLT1H LTR MaLR -137 412 14 21 0 0 0 chr1 197973782 197973803 -84219861 + AT_rich Low_complexity Low_complexity 1 21 0 192 247 96 14 chr1 197975508 197975581 -84218083 - MIR SINE MIR -59 203 125 190 307 109 40 chr1 197975739 197975840 -84217824 + MIR SINE MIR 10 117 -145 4930 176 15 53 chr1 197975919 197976488 -84217176 + L1MA9 LINE L1 4330 4919 -1393 2300 110 3 0 chr1 197976488 197976788 -84216876 + AluSc SINE Alu 1 301 -8 4930 176 15 53 chr1 197976788 197978066 -84215598 + L1MA9 LINE L1 4919 6105 -207 514 291 102 34 chr1 197978280 197978575 -84215089 - L2 LINE L2 -1 3312 2998 241 236 36 0 chr1 197979292 197979347 -84214317 + CT-rich Low_complexity Low_complexity 2 58 0 2238 180 18 3 chr1 197979602 197979986 -84213678 - MLT1B LTR MaLR 0 390 1 950 276 32 35 chr1 197981191 197981503 -84212161 - MER110 LTR ERV1 -16 475 165 400 213 12 113 chr1 197981684 197981765 -84211899 - MER110-int LTR ERV1 0 4647 4588 2618 219 28 44 chr1 197981765 197982265 -84211399 + MLT1E2 LTR MaLR 1 490 -136 1704 171 6 34 chr1 197982265 197982586 -84211078 + AluJb SINE Alu 1 312 0 2618 219 28 44 chr1 197982586 197982721 -84210943 + MLT1E2 LTR MaLR 490 626 0 400 213 12 113 chr1 197982721 197982799 -84210865 - MER110-int LTR ERV1 -59 4588 4504 600 148 113 43 chr1 197982997 197983112 -84210552 + FLAM_C SINE Alu 1 123 -10 2245 115 3 0 chr1 197983574 197983878 -84209786 + AluSq SINE Alu 1 305 -8 203 309 0 0 chr1 197983899 197983954 -84209710 - L2 LINE L2 -3 3269 3215 248 305 12 0 chr1 197983998 197984080 -84209584 + L1M4 LINE L1 4753 4835 -1311 2338 45 0 0 chr1 197984644 197984912 -84208752 + AluY SINE Alu 35 302 -9 5261 275 55 42 chr1 197984927 197986782 -84206882 - MER110-int LTR ERV1 -679 3968 2089 2612 45 0 7 chr1 197987388 197987698 -84205966 - AluY SINE Alu -3 308 1 1526 201 29 16 chr1 197987738 197988051 -84205613 - MER77 LTR ERV1 0 605 289 215 309 93 0 chr1 197988190 197988287 -84205377 + L2 LINE L2 2394 2499 -815 251 307 59 10 chr1 197989941 197990042 -84203622 - MIR SINE MIR -40 222 117 445 328 94 0 chr1 197990475 197990667 -84202997 + MER63A DNA MER1_type 1 210 0 6918 79 16 2 chr1 197990957 197992648 -84201016 + L1PA13 LINE L1 4471 6149 -14 700 235 94 47 chr1 197992895 197993016 -84200648 + L1MC5 LINE L1 7371 7485 -476 2318 104 3 0 chr1 197993016 197993324 -84200340 + AluY SINE Alu 1 309 -2 700 235 94 47 chr1 197993324 197993500 -84200164 + L1MC5 LINE L1 7485 7682 -279 205 162 0 0 chr1 197994042 197994079 -84199585 + (CAT)n Simple_repeat Simple_repeat 3 39 0 261 0 0 0 chr1 197994270 197994299 -84199365 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 258 273 212 86 chr1 197994299 197994497 -84199167 - L2 LINE L2 -16 3256 3034 372 267 128 67 chr1 197996247 197996442 -84197222 + MIR SINE MIR 27 233 -29 210 345 9 35 chr1 197997012 197997128 -84196536 - L2 LINE L2 0 3313 3201 1252 181 54 108 chr1 197997573 197997887 -84195777 + AluJo SINE Alu 2 298 -4 720 291 50 17 chr1 197998528 197998769 -84194895 + MIR SINE MIR 4 252 -10 216 0 0 0 chr1 197998816 197998840 -84194824 + (CA)n Simple_repeat Simple_repeat 1 24 0 32 0 0 0 chr1 197999130 197999162 -84194502 + AT_rich Low_complexity Low_complexity 1 32 0 715 189 0 0 chr1 197999162 197999273 -84194391 - FLAM_C SINE Alu -17 126 16 434 253 42 32 chr1 197999325 197999515 -84194149 + L1 LINE L1 4130 4321 -1825 1079 255 58 47 chr1 197999605 197999665 -84193999 - L1ME LINE L1 -560 5604 5546 1615 140 147 0 chr1 197999665 197999930 -84193734 + AluSx SINE Alu 1 304 -8 1079 255 58 47 chr1 197999930 198000584 -84193080 - L1ME LINE L1 -618 5546 4870 201 74 0 0 chr1 198000777 198000804 -84192860 + (T)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr1 198003094 198003120 -84190544 + AT_rich Low_complexity Low_complexity 1 26 0 231 208 104 39 chr1 198003632 198003709 -84189955 + L2 LINE L2 3232 3313 0 358 295 44 13 chr1 198004042 198004183 -84189481 - MIR SINE MIR -63 145 24 1526 199 56 28 chr1 198004508 198004864 -84188800 - MLT1F LTR MaLR -2 540 175 1250 214 54 64 chr1 198004864 198005276 -84188388 + MER39 LTR ERV1 1 590 -117 1399 181 55 0 chr1 198005316 198005608 -84188056 + L1MA4 LINE L1 5991 6298 -2 1806 175 0 13 chr1 198005610 198005919 -84187745 + AluSx SINE Alu 1 305 -7 370 202 35 44 chr1 198005920 198006034 -84187630 + MER39 LTR ERV1 595 707 0 575 245 104 18 chr1 198006036 198006199 -84187465 - MLT1F LTR MaLR -365 177 1 808 128 0 68 chr1 198007350 198007371 -84186293 - FLAM_C SINE Alu -187 125 104 2482 115 45 25 chr1 198007371 198007728 -84185936 - THE1B LTR MaLR 0 364 1 808 128 0 68 chr1 198007728 198007839 -84185825 - FLAM_C SINE Alu -208 104 2 2493 114 145 72 chr1 198008046 198008521 -84185143 - LTR54 LTR ERV1 0 510 1 839 243 53 14 chr1 198008791 198009029 -84184635 - LTR31 LTR ERV1 -19 526 337 397 273 29 14 chr1 198009211 198009350 -84184314 - LTR43 LTR ERV1 -281 321 181 1085 193 14 37 chr1 198009527 198009745 -84183919 - LTR31 LTR ERV1 -304 315 103 423 254 273 24 chr1 198010242 198010451 -84183213 + L3 LINE CR1 1233 1493 -84 3212 115 20 63 chr1 198011466 198011903 -84181761 - MER4B LTR ERV1 0 779 214 2314 106 0 3 chr1 198011903 198012205 -84181459 + AluSg SINE Alu 1 301 -9 3212 115 20 63 chr1 198012205 198012411 -84181253 - MER4B LTR ERV1 -565 214 1 882 169 85 112 chr1 198012521 198012816 -84180848 - MER58B DNA MER1_type -17 324 38 503 282 112 5 chr1 198013623 198013811 -84179853 + MIR SINE MIR 47 254 -8 1149 178 139 4 chr1 198013830 198013960 -84179704 + MER49 LTR ERV1 1 112 -811 2049 167 36 0 chr1 198013960 198014320 -84179344 + MER83C LTR ERV1 1 373 0 1149 178 139 4 chr1 198014320 198014448 -84179216 + MER49 LTR ERV1 112 294 -629 3269 164 11 74 chr1 198014508 198015213 -84178451 + MER4D LTR ERV1 243 903 0 3623 128 38 21 chr1 198015392 198015707 -84177957 - LTR29 LTR ERV1 0 622 291 1859 151 97 31 chr1 198015707 198016057 -84177607 + MER83C LTR ERV1 1 373 0 3623 128 38 21 chr1 198016057 198016345 -84177319 - LTR29 LTR ERV1 -331 291 9 2129 78 0 0 chr1 198016710 198016981 -84176683 - AluY SINE Alu -6 305 35 238 305 12 0 chr1 198017544 198017626 -84176038 - L1M4 LINE L1 -1311 4835 4753 209 309 0 0 chr1 198017670 198017725 -84175939 + L2 LINE L2 3215 3269 -3 2117 116 3 0 chr1 198017746 198018048 -84175616 - AluSq SINE Alu -8 305 3 214 342 27 63 chr1 198020165 198020276 -84173388 + MIR3 SINE MIR 13 119 -89 604 341 102 7 chr1 198020308 198020592 -84173072 + L2 LINE L2 2495 2805 -509 228 284 108 14 chr1 198020638 198020712 -84172952 + L2 LINE L2 3192 3272 0 630 146 0 0 chr1 198022067 198022177 -84171487 + (GGGA)n Simple_repeat Simple_repeat 1 110 0 204 97 0 0 chr1 198022301 198022332 -84171332 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 356 206 52 10 chr1 198022709 198022806 -84170858 + MIR SINE MIR 80 180 -82 388 298 73 22 chr1 198022823 198023001 -84170663 + L2 LINE L2 2671 2857 -457 347 364 16 8 chr1 198023079 198023200 -84170464 + L2 LINE L2 2958 3079 -193 776 282 69 46 chr1 198023209 198023712 -84169952 + L2 LINE L2 2537 3277 -36 848 136 43 0 chr1 198023738 198023878 -84169786 - FAM SINE Alu -20 165 20 1654 159 38 3 chr1 198023920 198024210 -84169454 - AluJo SINE Alu -12 300 1 304 315 62 31 chr1 198024241 198024371 -84169293 + L2 LINE L2 3180 3313 0 452 290 155 0 chr1 198025451 198025606 -84168058 + MIR SINE MIR 70 248 -14 470 220 137 18 chr1 198026174 198026342 -84167322 + MER53 DNA DNA 2 189 0 1532 173 21 28 chr1 198026542 198026831 -84166833 - AluJo SINE Alu -4 308 22 24 0 0 0 chr1 198027012 198027036 -84166628 + AT_rich Low_complexity Low_complexity 1 24 0 420 20 0 0 chr1 198027119 198027168 -84166496 + (TG)n Simple_repeat Simple_repeat 2 50 0 269 213 12 25 chr1 198027177 198027257 -84166407 - L1MC4 LINE L1 -1350 6692 6614 207 182 0 0 chr1 198027258 198027291 -84166373 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 357 217 64 76 chr1 198027301 198027458 -84166206 + L1ME LINE L1 1491 1645 -4885 740 242 149 71 chr1 198027662 198028125 -84165539 - MLT1J LTR MaLR -12 499 1 501 311 47 16 chr1 198028127 198028320 -84165344 + L1ME LINE L1 1903 2101 -4439 785 308 38 45 chr1 198028516 198028959 -84164705 + L1ME LINE L1 5520 5965 -550 1962 160 38 72 chr1 198028959 198029402 -84164262 - MSTA LTR MaLR 0 428 1 785 308 38 45 chr1 198029402 198029434 -84164230 + L1ME LINE L1 5965 5996 -519 1916 138 34 0 chr1 198029434 198029732 -84163932 - AluJb SINE Alu -4 308 1 785 308 38 45 chr1 198029732 198029966 -84163698 + L1ME LINE L1 5996 6213 -302 1960 124 7 93 chr1 198030183 198030411 -84163253 + L1MA8 LINE L1 5896 6142 -149 1885 156 0 0 chr1 198030411 198030712 -84162952 - AluJb SINE Alu -7 305 5 1960 124 7 93 chr1 198030712 198030817 -84162847 + L1MA8 LINE L1 6142 6187 -104 2377 74 0 0 chr1 198030817 198031116 -84162548 + AluSc SINE Alu 1 299 -10 1960 124 7 93 chr1 198031116 198031209 -84162455 + L1MA8 LINE L1 6187 6286 -5 180 250 25 88 chr1 198031282 198031362 -84162302 + MIR SINE MIR 106 180 -82 211 231 108 15 chr1 198031526 198031591 -84162073 - MIR3 SINE MIR -127 81 11 955 256 55 4 chr1 198031624 198031862 -84161802 + MIR SINE MIR 12 261 -1 215 362 53 0 chr1 198032991 198033085 -84160579 + MIR SINE MIR 65 163 -99 842 229 87 110 chr1 198033101 198033547 -84160117 - MLT1J LTR MaLR -51 460 25 1373 184 61 0 chr1 198034260 198034521 -84159143 - AluJo SINE Alu -35 277 1 280 283 81 20 chr1 198035487 198035586 -84158078 + MIR SINE MIR 154 258 -4 310 376 56 0 chr1 198035779 198035904 -84157760 + MIR SINE MIR 13 144 -118 236 305 99 38 chr1 198036495 198036626 -84157038 + MIR SINE MIR 124 262 0 1668 147 25 0 chr1 198038053 198038332 -84155332 - AluJo SINE Alu -26 286 1 3268 179 97 7 chr1 198038355 198039048 -84154616 - L1MD2 LINE L1 0 6359 5605 1742 172 0 0 chr1 198039052 198039354 -84154310 - AluJo SINE Alu -10 302 1 392 277 33 16 chr1 198039394 198039578 -84154086 - L1ME3A LINE L1 -233 5937 5751 336 174 130 33 chr1 198039691 198039783 -84153881 + MIR SINE MIR 45 145 -63 183 80 0 0 chr1 198039792 198039817 -84153847 + (TAA)n Simple_repeat Simple_repeat 2 26 0 185 42 0 0 chr1 198040137 198040161 -84153503 - MIR SINE MIR -70 138 115 194 254 0 51 chr1 198040409 198040468 -84153196 + L3 LINE CR1 1233 1288 -289 201 274 82 41 chr1 198040565 198040638 -84153026 + MIR3 SINE MIR 99 174 -34 328 216 31 62 chr1 198041154 198041251 -84152413 + MIR SINE MIR 90 183 -79 263 184 0 0 chr1 198041413 198041462 -84152202 - L1MB8 LINE L1 -37 6141 6093 1804 146 47 25 chr1 198041481 198041844 -84151820 - L1MB4 LINE L1 -6 6174 5804 555 276 111 5 chr1 198041867 198042066 -84151598 - MIR SINE MIR -30 232 13 847 260 48 12 chr1 198042754 198043004 -84150660 - MER46C DNA MER2_type 0 338 80 234 298 179 13 chr1 198043692 198043843 -84149821 - MER91A DNA MER1_type -18 178 3 211 268 37 24 chr1 198045139 198045221 -84148443 - MIR3 SINE MIR -17 191 109 192 272 217 11 chr1 198045379 198045471 -84148193 - L2 LINE L2 -18 3254 3144 216 0 0 0 chr1 198045550 198045574 -84148090 + (T)n Simple_repeat Simple_repeat 1 24 0 233 143 0 20 chr1 198045710 198045759 -84147905 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 648 280 129 9 chr1 198045794 198046019 -84147645 + MIR SINE MIR 6 257 -5 226 302 52 0 chr1 198046337 198046433 -84147231 - L2 LINE L2 -299 2973 2873 360 191 50 43 chr1 198046683 198046824 -84146840 - MER113 DNA MER1_type? -374 147 6 189 270 230 14 chr1 198047324 198047398 -84146266 + MER5A DNA MER1_type 5 94 -95 332 287 152 18 chr1 198047431 198047595 -84146069 + MIR SINE MIR 53 238 -24 250 289 13 37 chr1 198047623 198047712 -84145952 + MER5A DNA MER1_type 91 189 0 23 0 0 0 chr1 198048185 198048208 -84145456 + AT_rich Low_complexity Low_complexity 1 23 0 253 323 83 0 chr1 198048629 198048725 -84144939 + MIR SINE MIR 103 206 -56 283 247 13 39 chr1 198049212 198049289 -84144375 + MER5A DNA MER1_type 114 188 -1 474 273 143 25 chr1 198049318 198049629 -84144035 + L3 LINE CR1 1147 1554 -23 353 340 51 41 chr1 198050239 198050436 -84143228 + MIR SINE MIR 51 249 -13 492 253 113 0 chr1 198050799 198050949 -84142715 + MIR SINE MIR 90 256 -6 353 271 42 17 chr1 198051713 198051831 -84141833 - L2 LINE L2 -1 3271 3151 216 0 0 0 chr1 198052124 198052148 -84141516 + (CA)n Simple_repeat Simple_repeat 2 25 0 206 289 12 24 chr1 198052463 198052546 -84141118 + C-rich Low_complexity Low_complexity 2 83 0 423 299 159 5 chr1 198055600 198055814 -84137850 - MIR SINE MIR -14 248 2 525 300 86 9 chr1 198058254 198058464 -84135200 + MIR SINE MIR 23 248 -14 399 331 12 25 chr1 198058747 198058907 -84134757 + MIR3 SINE MIR 45 202 -6 746 284 142 23 chr1 198059243 198059553 -84134111 - MLT1I LTR MaLR 0 409 63 504 301 0 7 chr1 198059607 198059743 -84133921 - MIR3 SINE MIR -42 166 32 191 259 247 0 chr1 198059773 198059854 -84133810 + MIR SINE MIR 45 145 -63 420 283 92 17 chr1 198060222 198060395 -84133269 - MIR SINE MIR -56 206 21 1815 255 163 13 chr1 198061516 198062438 -84131226 - L2 LINE L2 0 3313 2186 289 258 187 104 chr1 198062397 198062579 -84131085 - MIR SINE MIR -3 259 63 * 303 259 78 26 chr1 198062605 198062721 -84130943 + MIR SINE MIR 75 196 -66 184 309 48 36 chr1 198062906 198062990 -84130674 + L2 LINE L2 3144 3228 -44 1365 175 44 19 chr1 198063227 198063549 -84130115 - MER33 DNA MER1_type 0 324 1 403 187 156 18 chr1 198063608 198063717 -84129947 - FLAM_A SINE Alu -2 131 6 235 299 35 0 chr1 198064548 198064635 -84129029 + MIR SINE MIR 126 215 -47 435 274 52 7 chr1 198064670 198064805 -84128859 - MIR SINE MIR -76 186 46 453 306 63 10 chr1 198065873 198066079 -84127585 + MIR SINE MIR 39 255 -7 1913 152 3 17 chr1 198066502 198066799 -84126865 - AluSx SINE Alu -19 293 1 293 247 0 21 chr1 198067376 198067469 -84126195 + MER5B DNA MER1_type 1 91 -87 248 210 65 0 chr1 198068134 198068196 -84125468 + MIR SINE MIR 188 253 -9 223 208 62 0 chr1 198068573 198068621 -84125043 - MIR SINE MIR -184 78 28 666 197 60 33 chr1 198069188 198069371 -84124293 - MER53 DNA DNA 0 189 2 523 273 48 6 chr1 198069570 198069706 -84123958 - MIR SINE MIR -31 231 85 2267 118 0 0 chr1 198069706 198070010 -84123654 + AluSc SINE Alu 1 304 -5 523 273 48 6 chr1 198070010 198070038 -84123626 - MIR SINE MIR -177 85 60 2352 60 0 3 chr1 198070081 198070391 -84123273 - AluY SINE Alu 0 309 1 220 269 202 39 chr1 198070836 198070940 -84122724 - L2 LINE L2 -8 3264 3144 2061 134 134 11 chr1 198071852 198072233 -84121431 + MSTA LTR MaLR 1 428 0 307 233 75 25 chr1 198072527 198072647 -84121017 - MLT1L LTR MaLR -14 601 476 2585 196 13 52 chr1 198072775 198072994 -84120670 + MER87 LTR ERV1 12 238 -303 1553 154 0 53 chr1 198072994 198073279 -84120385 - AluJb SINE Alu -28 284 15 2585 196 13 52 chr1 198073279 198073611 -84120053 + MER87 LTR ERV1 238 541 0 318 283 11 11 chr1 198073629 198073721 -84119943 - MLT1L LTR MaLR -328 287 196 2367 216 52 94 chr1 198073968 198074779 -84118885 - MER21B LTR ERV1 -86 777 1 837 159 7 14 chr1 198075684 198075829 -84117835 + AluJ SINE Alu 1 144 -168 1013 184 0 0 chr1 198075960 198076149 -84117515 + AluJ SINE Alu 120 308 0 505 143 95 0 chr1 198076352 198076457 -84117207 - L1MA4 LINE L1 -1 6299 6185 215 247 108 21 chr1 198077385 198077478 -84116186 + MIR3 SINE MIR 65 165 -43 2426 190 115 76 chr1 198077730 198078523 -84115141 + LTR1B LTR ERV1 1 824 -2 228 277 18 71 chr1 198078540 198078652 -84115012 - L2 LINE L2 -6 3266 3161 1050 285 47 21 chr1 198078919 198079305 -84114359 - L2 LINE L2 -4 3309 2914 294 172 0 97 chr1 198080027 198080120 -84113544 - L1ME3A LINE L1 -7 6163 6080 337 205 13 13 chr1 198080143 198080221 -84113443 + MIR SINE MIR 171 248 -14 4575 130 97 13 chr1 198081260 198082022 -84111642 + LTR1B LTR ERV1 1 826 0 303 108 308 0 chr1 198082932 198082997 -84110667 - MER67C LTR ERV1 0 710 626 2894 144 137 5 chr1 198083046 198083601 -84110063 - MER67C LTR ERV1 -82 628 1 220 225 0 0 chr1 198085696 198085736 -84107928 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 229 139 0 0 chr1 198085737 198085780 -84107884 - LTR66 LTR ERVL -171 439 397 2222 148 9 81 chr1 198085789 198086222 -84107442 - MER57A LTR ERV1 -1 402 1 768 142 22 22 chr1 198086230 198086364 -84107300 - MER57A-int LTR ERV1 -47 7490 7357 1678 172 69 0 chr1 198086387 198086678 -84106986 - AluSx SINE Alu -1 311 1 317 102 41 0 chr1 198086778 198086827 -84106837 - LTR54B LTR ERV1 -368 130 80 722 201 13 39 chr1 198086842 198086872 -84106792 - MER57A-int LTR ERV1 -1563 5974 5945 706 34 0 0 chr1 198086872 198087022 -84106642 - L1PA3 LINE L1 0 6155 6068 722 201 13 39 chr1 198087022 198087145 -84106519 - MER57A-int LTR ERV1 -1592 5945 5825 805 184 20 0 chr1 198087472 198087619 -84106045 - MER57A-int LTR ERV1 -1716 5821 5672 4818 202 73 70 chr1 198087631 198088086 -84105578 - MER57A-int LTR ERV1 -1498 3438 2986 1014 105 0 0 chr1 198088086 198088219 -84105445 + FLAM_C SINE Alu 1 133 0 4818 202 73 70 chr1 198088219 198089596 -84104068 - MER57A-int LTR ERV1 -1950 2986 1753 415 262 29 0 chr1 198089750 198089853 -84103811 - MER57A-int LTR ERV1 -2876 3455 3350 4116 135 47 37 chr1 198089932 198090636 -84103028 - MER50 LTR ERV1 -23 711 1 256 208 19 0 chr1 198090636 198090689 -84102975 - MER57A-int LTR ERV1 -3014 3317 3264 713 167 66 81 chr1 198090741 198090939 -84102725 - MER57A-int LTR ERV1 -3059 3272 3078 321 204 0 61 chr1 198090947 198091045 -84102619 - MER57A-int LTR ERV1 -3724 1399 1308 300 243 45 36 chr1 198091040 198091151 -84102513 - MER57A-int LTR ERV1 -4618 1980 1869 * 872 247 58 36 chr1 198091159 198091434 -84102230 - MER34C LTR ERV1 -147 438 158 486 230 0 91 chr1 198091434 198091599 -84102065 - MER57A-int LTR ERV1 -4132 991 842 3793 192 19 61 chr1 198091691 198092577 -84101087 - MER57A-int LTR ERV1 -6688 849 1 2176 159 14 59 chr1 198092577 198092999 -84100665 - MER57A LTR ERV1 0 403 1 2049 143 3 0 chr1 198094345 198094655 -84099009 + AluSx SINE Alu 1 311 0 769 126 7 84 chr1 198094666 198094809 -84098855 - FLAM_C SINE Alu -1 132 1 383 125 50 0 chr1 198097208 198097288 -84096376 - MER67C LTR ERV1 -2 708 625 27 0 0 26 chr1 198097288 198097310 -84096354 + AT_rich Low_complexity Low_complexity 1 23 -14 2280 97 14 0 chr1 198097310 198097598 -84096066 - AluSp SINE Alu -21 292 1 27 0 0 26 chr1 198097598 198097613 -84096051 + AT_rich Low_complexity Low_complexity 23 37 0 812 169 0 0 chr1 198097620 198097738 -84095926 - FLAM_C SINE Alu -25 118 1 2772 141 64 17 chr1 198097777 198098259 -84095405 - MER67C LTR ERV1 -82 628 124 582 261 8 0 chr1 198098377 198098507 -84095157 - FLAM_A SINE Alu -2 131 1 208 346 65 39 chr1 198098595 198098826 -84094838 - L3b LINE CR1 -11 1572 1336 2391 83 3 7 chr1 198099076 198099376 -84094288 - AluSq SINE Alu -14 299 1 366 344 33 42 chr1 198099592 198099807 -84093857 + L3 LINE CR1 1312 1524 -53 2705 85 6 0 chr1 198100490 198100843 -84092821 + THE1A LTR MaLR 1 355 0 2580 110 8 16 chr1 198100930 198101311 -84092353 + LTR49 LTR ERV1 1 378 -217 301 197 0 30 chr1 198101308 198101374 -84092290 - MSTB1 LTR MaLR -13 419 356 * 1764 177 74 11 chr1 198101674 198102024 -84091640 - MSTB1 LTR MaLR -60 372 1 1377 121 26 13 chr1 198102024 198102255 -84091409 + LTR49 LTR ERV1 362 595 0 3678 177 49 47 chr1 198102257 198102906 -84090758 + LTR49-int LTR ERV1 1 648 -5298 2324 78 0 53 chr1 198102906 198103226 -84090438 - AluSg SINE Alu -7 303 1 3678 177 49 47 chr1 198103226 198103768 -84089896 + LTR49-int LTR ERV1 648 1498 -4448 695 111 0 26 chr1 198103938 198104055 -84089609 + LTR49-int LTR ERV1 1042 1155 -5176 290 246 58 0 chr1 198104075 198104144 -84089520 + tRNA-Glu-GAG tRNA tRNA 3 75 0 440 133 114 9 chr1 198104144 198104249 -84089415 + LTR49-int LTR ERV1 1283 1398 -4933 4607 201 48 68 chr1 198104339 198105100 -84088564 + LTR49-int LTR ERV1 1354 2082 -4249 207 88 0 0 chr1 198105100 198105134 -84088530 + (TGG)n Simple_repeat Simple_repeat 1 34 0 4607 201 48 68 chr1 198105134 198105586 -84088078 + LTR49-int LTR ERV1 2082 2542 -3789 786 134 15 8 chr1 198105586 198105720 -84087944 - MSTB1 LTR MaLR 0 432 298 2157 156 38 39 chr1 198105720 198106271 -84087393 - MLT2A2 LTR ERVL 0 554 1 1329 193 43 43 chr1 198106273 198106314 -84087350 - MSTB1 LTR MaLR -132 300 260 2225 117 13 3 chr1 198106314 198106621 -84087043 + AluSx SINE Alu 1 310 -2 1329 193 43 43 chr1 198106621 198106879 -84086785 - MSTB1 LTR MaLR -171 261 1 5691 168 57 72 chr1 198106881 198108411 -84085253 + LTR49-int LTR ERV1 2540 4046 -2285 465 145 15 1 chr1 198108415 198108677 -84084987 + AluJo SINE Alu 6 304 -8 325 165 186 10 chr1 198108677 198109070 -84084594 - LTR49-int LTR ERV1 -2210 4121 4008 10554 154 47 39 chr1 198108721 198108754 -84084910 + LTR49-int LTR ERV1 4108 4139 -2192 1645 172 37 10 chr1 198108754 198109051 -84084613 - AluJb SINE Alu -7 305 1 10554 154 47 39 chr1 198109051 198109767 -84083897 + LTR49-int LTR ERV1 4139 4848 -1483 2321 107 3 0 chr1 198109767 198110067 -84083597 + AluSp SINE Alu 2 302 -11 10554 154 47 39 chr1 198110067 198110418 -84083246 + LTR49-int LTR ERV1 4848 5195 -1136 2171 136 0 0 chr1 198110418 198110712 -84082952 - AluSg SINE Alu -16 294 1 2317 102 116 0 chr1 198110719 198111082 -84082582 - L1PA10 LINE L1 0 6168 5764 10554 154 47 39 chr1 198111082 198112228 -84081436 + LTR49-int LTR ERV1 5200 6329 -2 2363 96 14 41 chr1 198112246 198112455 -84081209 + LTR49 LTR ERV1 1 197 -398 2102 131 0 3 chr1 198112455 198112753 -84080911 - AluSg SINE Alu -13 297 1 2363 96 14 41 chr1 198112753 198112908 -84080756 + LTR49 LTR ERV1 197 355 -240 912 86 16 8 chr1 198112946 198113074 -84080590 + L1PA7 LINE L1 6025 6153 -1 207 0 0 0 chr1 198113122 198113145 -84080519 + (T)n Simple_repeat Simple_repeat 1 23 0 1611 91 50 0 chr1 198113485 198113704 -84079960 - MER30 DNA MER1_type 0 230 1 2023 159 0 13 chr1 198114166 198114480 -84079184 + AluSx SINE Alu 1 310 -2 1348 186 26 15 chr1 198114485 198114749 -84078915 + AluSx SINE Alu 41 307 -5 1585 167 3 66 chr1 198114777 198115094 -84078570 - AluJb SINE Alu -11 301 5 484 219 9 61 chr1 198115404 198115518 -84078146 + MER58B DNA MER1_type 1 108 -233 2914 195 71 38 chr1 198115564 198116226 -84077438 + MER21B LTR ERV1 1 684 -179 2029 214 130 23 chr1 198116235 198116890 -84076774 + MER50 LTR ERV1 10 734 0 556 179 11 0 chr1 198116890 198116984 -84076680 + MER21B LTR ERV1 684 778 -85 859 182 0 14 chr1 198117005 198117153 -84076511 + MER58B DNA MER1_type 195 340 -1 2298 63 6 48 chr1 198117195 198117511 -84076153 - AluY SINE Alu -8 303 1 23 0 0 0 chr1 198117521 198117544 -84076120 + AT_rich Low_complexity Low_complexity 1 23 0 1574 169 24 21 chr1 198117545 198117835 -84075829 - AluSx SINE Alu -21 291 1 1694 161 57 4 chr1 198118033 198118312 -84075352 + AluJb SINE Alu 1 294 -18 21 0 0 0 chr1 198118878 198118899 -84074765 + AT_rich Low_complexity Low_complexity 1 21 0 1302 180 107 18 chr1 198118900 198119228 -84074436 - L1MC3 LINE L1 -9 7776 7420 510 130 0 0 chr1 198119270 198119339 -84074325 - MER1B DNA MER1_type -1 328 260 1921 144 4 0 chr1 198119416 198119693 -84073971 - MER1B DNA MER1_type -61 278 1 2449 148 72 13 chr1 198119704 198120177 -84073487 - L1MC3 LINE L1 -374 7411 6911 346 339 48 16 chr1 198120363 198120487 -84073177 + L2 LINE L2 3137 3264 -8 819 175 160 16 chr1 198121377 198121571 -84072093 + AluJo SINE Alu 69 290 -22 683 179 8 22 chr1 198121583 198121717 -84071947 + FLAM_C SINE Alu 1 132 -1 228 100 0 0 chr1 198122366 198122406 -84071258 + (A)n Simple_repeat Simple_repeat 1 40 0 987 236 7 65 chr1 198122422 198122627 -84071037 + MER46C DNA MER2_type 79 265 -73 1976 120 0 4 chr1 198122627 198122894 -84070770 - AluSq SINE Alu -47 266 1 987 236 7 65 chr1 198122894 198122964 -84070700 + MER46C DNA MER2_type 265 338 0 191 36 36 0 chr1 198123051 198123079 -84070585 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2282 70 7 27 chr1 198123127 198123428 -84070236 - AluY SINE Alu -16 295 1 756 247 149 0 chr1 198123595 198123789 -84069875 + MER58A DNA MER1_type 2 224 0 2473 61 7 0 chr1 198126799 198127096 -84066568 - AluSp SINE Alu -12 301 3 2042 113 3 26 chr1 198128311 198128621 -84065043 + AluSc SINE Alu 1 303 -6 2180 92 0 11 chr1 198130397 198130707 -84062957 + AluSp SINE Alu 6 312 0 225 0 0 0 chr1 198130866 198130891 -84062773 + (TA)n Simple_repeat Simple_repeat 2 26 0 2921 258 101 18 chr1 198131114 198131568 -84062096 + L1ME1 LINE L1 1082 1497 -4718 2356 90 0 0 chr1 198131568 198131868 -84061796 + AluSq SINE Alu 1 300 -13 2921 258 101 18 chr1 198131868 198132059 -84061605 + L1ME1 LINE L1 1497 1671 -4544 1737 166 0 27 chr1 198132059 198132355 -84061309 + AluJo SINE Alu 5 292 -20 2921 258 101 18 chr1 198132355 198132904 -84060760 + L1ME1 LINE L1 1671 2173 -4042 890 130 8 0 chr1 198132904 198133035 -84060629 + AluJ SINE Alu 1 132 -170 2921 258 101 18 chr1 198133035 198134128 -84059536 + L1ME1 LINE L1 2173 3520 -2695 3728 233 80 44 chr1 198134134 198134397 -84059267 + L1ME1 LINE L1 3669 3921 -2294 1646 174 34 7 chr1 198134397 198134690 -84058974 + AluJb SINE Alu 1 301 -11 3728 233 80 44 chr1 198134690 198135195 -84058469 + L1ME1 LINE L1 3921 4406 -1809 315 0 0 0 chr1 198135195 198135230 -84058434 + (CA)n Simple_repeat Simple_repeat 1 35 0 3728 233 80 44 chr1 198135230 198135968 -84057696 + L1ME1 LINE L1 4406 5230 -985 320 267 42 58 chr1 198135963 198136083 -84057581 + L1ME1 LINE L1 5504 5621 -614 * 473 235 0 0 chr1 198136085 198136170 -84057494 + MER7A DNA MER2_type 2 84 -262 * 3929 104 54 13 chr1 198136152 198137022 -84056642 + Tigger3b DNA MER2_type 278 1232 0 2005 252 41 15 chr1 198137025 198137616 -84056048 + L1ME1 LINE L1 5624 6229 -6 1807 302 54 19 chr1 198138127 198139042 -84054622 + L1ME1 LINE L1 3423 4369 -1846 384 345 130 9 chr1 198139638 198139861 -84053803 + MIR SINE MIR 1 250 -12 2063 229 55 12 chr1 198140220 198140714 -84052950 + MLT2B2 LTR ERVL 1 515 0 226 366 79 10 chr1 198140865 198140966 -84052698 - L2 LINE L2 -40 3232 3125 1123 164 0 0 chr1 198140969 198141146 -84052518 + AluJ SINE Alu 131 307 -5 812 205 103 126 chr1 198141555 198141945 -84051719 + MER34B LTR ERV1 1 381 -184 544 183 33 25 chr1 198142026 198142146 -84051518 + MER34 LTR ERV1 417 537 -5 2058 229 62 71 chr1 198192271 198192449 -84001215 + L1ME1 LINE L1 5218 5396 -839 2150 93 0 10 chr1 198192449 198192739 -84000925 - AluY SINE Alu -24 287 1 2058 229 62 71 chr1 198192739 198193489 -84000175 + L1ME1 LINE L1 5396 6142 -93 2821 16 0 3 chr1 198193489 198193802 -83999862 - AluYb8 SINE Alu -6 312 1 2058 229 62 71 chr1 198193802 198193891 -83999773 + L1ME1 LINE L1 6142 6230 -5 448 283 0 0 chr1 198194497 198194596 -83999068 - MER58 DNA MER1_type -2315 105 7 27 0 0 0 chr1 198194738 198194765 -83998899 + AT_rich Low_complexity Low_complexity 1 27 0 1300 175 115 7 chr1 198195096 198195365 -83998299 - AluSg SINE Alu -12 298 1 921 215 65 109 chr1 198195952 198196150 -83997514 + MER34B LTR ERV1 1 206 -336 2037 113 0 63 chr1 198196150 198196468 -83997196 - AluSg SINE Alu -12 298 1 921 215 65 109 chr1 198196468 198196855 -83996809 + MER34B LTR ERV1 206 540 -2 1466 107 111 23 chr1 198197525 198197658 -83996006 + L1MC1 LINE L1 6049 6169 -164 3980 155 24 45 chr1 198197658 198198460 -83995204 + LTR1 LTR ERV1 1 785 0 1466 107 111 23 chr1 198198460 198198587 -83995077 + L1MC1 LINE L1 6169 6332 -1 298 153 42 0 chr1 198198644 198198716 -83994948 + CT-rich Low_complexity Low_complexity 3 77 0 836 188 24 6 chr1 198198737 198198902 -83994762 + MER5A DNA MER1_type 1 168 -21 1587 196 11 3 chr1 198199369 198199655 -83994009 + AluJb SINE Alu 23 310 -2 184 331 31 23 chr1 198200129 198200259 -83993405 + L2 LINE L2 1447 1577 -1737 235 319 121 17 chr1 198200294 198200410 -83993254 + L2 LINE L2 2004 2131 -1183 1408 196 19 48 chr1 198200781 198200821 -83992843 - AluJo SINE Alu 0 302 262 2298 99 3 0 chr1 198200821 198201123 -83992541 + AluSx SINE Alu 1 303 -9 1408 196 19 48 chr1 198201123 198201393 -83992271 - AluJo SINE Alu -40 262 1 2316 149 77 15 chr1 198201478 198201881 -83991783 + MSTA LTR MaLR 1 428 0 253 290 30 40 chr1 198202100 198202200 -83991464 - L3 LINE CR1 -145 1432 1334 547 272 48 53 chr1 198203453 198203659 -83990005 + MIR SINE MIR 20 224 -38 1931 123 43 0 chr1 198204390 198204667 -83988997 - AluSx SINE Alu -23 289 1 227 324 83 9 chr1 198205493 198205601 -83988063 + L2 LINE L2 3153 3268 -4 270 162 0 44 chr1 198205923 198205991 -83987673 + L1MC5 LINE L1 7610 7674 -287 11198 206 22 22 chr1 198206059 198206162 -83987502 + L1PA16 LINE L1 2442 2544 -3622 2293 103 7 0 chr1 198206162 198206464 -83987200 + AluSq SINE Alu 1 304 -9 11198 206 22 22 chr1 198206464 198210089 -83983575 + L1PA16 LINE L1 2544 6163 -3 25 0 0 0 chr1 198210098 198210123 -83983541 + AT_rich Low_complexity Low_complexity 1 25 0 638 185 84 0 chr1 198210328 198210447 -83983217 + FLAM_A SINE Alu 1 129 -4 332 182 73 27 chr1 198210447 198210557 -83983107 + L1MC4a LINE L1 2819 2933 -3213 1637 273 75 9 chr1 198210628 198211380 -83982284 + L1MC4a LINE L1 2900 3700 -2446 431 250 40 16 chr1 198211380 198211504 -83982160 - MIR SINE MIR -90 172 46 21 71 0 0 chr1 198211802 198211844 -83981820 + AT_rich Low_complexity Low_complexity 1 42 0 240 35 0 0 chr1 198211979 198212008 -83981656 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2334 97 7 0 chr1 198212966 198213275 -83980389 + AluSp SINE Alu 1 311 -2 444 39 0 0 chr1 198213928 198213980 -83979684 + MER61B LTR ERV1 374 425 0 552 234 142 135 chr1 198214019 198214045 -83979619 + MER21B LTR ERV1 17 41 -822 4388 124 17 19 chr1 198214045 198214737 -83978927 + LTR8 LTR ERV1 1 691 0 552 234 142 135 chr1 198214737 198215111 -83978553 + MER21B LTR ERV1 41 420 -443 * 985 192 0 0 chr1 198215108 198215275 -83978389 - MER46A DNA MER2_type -69 167 1 305 76 0 91 chr1 198215275 198215341 -83978323 + L1MD2 LINE L1 6297 6356 -3 240 301 26 57 chr1 198215421 198215650 -83978014 + L1MC4a LINE L1 4538 4759 -1387 327 282 40 16 chr1 198215691 198215815 -83977849 + L1MC4a LINE L1 4893 5019 -1127 2791 257 109 30 chr1 198216007 198217206 -83976458 + L1MC4a LINE L1 5254 6547 -1261 4144 103 54 41 chr1 198217466 198217609 -83976055 + LTR8 LTR ERV1 1 141 -550 1856 158 0 0 chr1 198217609 198217924 -83975740 - AluSx SINE Alu 0 315 1 4144 103 54 41 chr1 198217924 198218461 -83975203 + LTR8 LTR ERV1 141 691 0 1262 236 102 10 chr1 198218776 198219283 -83974381 + L1MC4a LINE L1 6600 7149 -659 * 1870 204 64 35 chr1 198219279 198219765 -83973899 + L1MC4 LINE L1 7308 7807 -235 260 303 129 13 chr1 198219830 198220140 -83973524 - L1ME LINE L1 -238 5883 5538 2326 89 0 0 chr1 198220424 198220727 -83972937 + AluSc SINE Alu 1 303 -6 593 262 88 35 chr1 198221841 198222113 -83971551 + L2 LINE L2 2750 3033 -280 250 264 0 81 chr1 198222129 198222216 -83971448 + L2 LINE L2 3180 3259 -54 580 278 25 8 chr1 198222301 198222464 -83971200 + MIR SINE MIR 1 163 -67 2195 89 3 3 chr1 198222464 198222755 -83970909 + AluSc SINE Alu 1 291 -18 239 121 0 0 chr1 198222874 198222907 -83970757 + Alu SINE Alu 251 283 -19 29 0 0 0 chr1 198223027 198223056 -83970608 + AT_rich Low_complexity Low_complexity 1 29 0 2161 100 0 4 chr1 198223067 198223348 -83970316 - AluSc SINE Alu -29 280 1 482 138 0 101 chr1 198224060 198224169 -83969495 - L1PA10 LINE L1 0 6168 6071 5704 142 35 16 chr1 198224173 198225250 -83968414 - L1MA4 LINE L1 -2 6298 5202 233 260 27 0 chr1 198225279 198225352 -83968312 - L1M4 LINE L1 -1998 4148 4074 2073 242 52 22 chr1 198225366 198225920 -83967744 - MER90 LTR ERV1 -1 574 4 1142 199 0 0 chr1 198226362 198226558 -83967106 - AluJb SINE Alu -30 282 87 1032 250 20 54 chr1 198226559 198226911 -83966753 + L1MC4 LINE L1 7703 8042 0 2145 107 7 3 chr1 198226923 198227222 -83966442 + AluSx SINE Alu 1 300 -12 2001 112 17 7 chr1 198227223 198227519 -83966145 + AluSc SINE Alu 1 299 -10 345 120 0 9 chr1 198227891 198227971 -83965693 - Alu SINE Alu -263 45 3 1639 67 9 0 chr1 198228022 198228245 -83965419 + L1P LINE L1 4476 4700 -1446 251 300 171 14 chr1 198228581 198228721 -83964943 - MIR SINE MIR -2 260 99 185 340 58 29 chr1 198229036 198229139 -83964525 + L2 LINE L2 3169 3274 -39 2363 76 0 3 chr1 198229907 198230210 -83963454 - AluY SINE Alu -9 302 1 6804 70 6 0 chr1 198230281 198231951 -83961713 + L1PA6 LINE L1 4476 6154 0 685 245 121 35 chr1 198231952 198232266 -83961398 + L1ME2 LINE L1 5824 6164 0 25 0 0 0 chr1 198232269 198232294 -83961370 + AT_rich Low_complexity Low_complexity 1 25 0 2232 100 3 0 chr1 198232397 198232697 -83960967 + AluSp SINE Alu 1 301 -12 1784 126 30 0 chr1 198232705 198233022 -83960642 + AluSg SINE Alu 1 325 0 200 31 62 0 chr1 198233196 198233228 -83960436 + A-rich Low_complexity Low_complexity 2 35 0 1280 197 106 14 chr1 198233547 198233831 -83959833 + AluJb SINE Alu 2 311 -1 401 267 21 70 chr1 198234480 198234667 -83958997 + MIR3 SINE MIR 21 198 -10 2192 105 0 0 chr1 198235063 198235382 -83958282 + AluSx SINE Alu 1 319 0 402 299 96 6 chr1 198235563 198235720 -83957944 + MIR SINE MIR 86 256 -6 1309 106 75 30 chr1 198235815 198235931 -83957733 + L1MA4A LINE L1 6027 6136 -167 1359 187 56 8 chr1 198235931 198236243 -83957421 + AluJo SINE Alu 1 325 0 1309 106 75 30 chr1 198236243 198236390 -83957274 + L1MA4A LINE L1 6136 6303 0 213 39 0 0 chr1 198237089 198237115 -83956549 + (CA)n Simple_repeat Simple_repeat 1 26 0 633 277 29 34 chr1 198237247 198237453 -83956211 - MIR SINE MIR -53 209 5 1713 101 4 27 chr1 198237639 198237896 -83955768 + AluSx SINE Alu 51 301 -11 48 0 0 0 chr1 198238665 198238713 -83954951 + AT_rich Low_complexity Low_complexity 1 48 0 261 254 0 0 chr1 198238902 198238961 -83954703 - MIR SINE MIR -6 256 198 401 183 0 24 chr1 198238963 198239045 -83954619 - AluJ/FRAM SINE Alu -5 307 228 2340 67 0 0 chr1 198239329 198239613 -83954051 + AluY SINE Alu 17 300 -11 309 318 28 0 chr1 198239729 198239836 -83953828 + MER46C DNA MER2_type 164 273 -65 7446 141 36 14 chr1 198241682 198244012 -83949652 - L1MA2 LINE L1 0 6304 3927 2233 100 10 0 chr1 198244012 198244312 -83949352 - AluSc SINE Alu -6 303 1 7446 141 36 14 chr1 198244312 198244378 -83949286 - L1MA2 LINE L1 -2377 3927 3864 264 200 89 44 chr1 198244548 198244638 -83949026 + L2 LINE L2 3176 3269 -44 4348 173 83 12 chr1 198244645 198245122 -83948542 - L1MA6 LINE L1 0 6300 5858 357 82 0 0 chr1 198245122 198245171 -83948493 + (TG)n Simple_repeat Simple_repeat 2 50 0 4348 173 83 12 chr1 198245171 198245625 -83948039 - L1MA6 LINE L1 -442 5858 5304 22 56 0 0 chr1 198246558 198246594 -83947070 + AT_rich Low_complexity Low_complexity 1 36 0 377 290 65 69 chr1 198249499 198249730 -83943934 + L2 LINE L2 2538 2767 -547 267 319 57 43 chr1 198249698 198249839 -83943825 + L2 LINE L2 2963 3105 -208 * 672 155 29 0 chr1 198249851 198249954 -83943710 - Tigger3(Golem) DNA MER2_type 0 3029 2924 367 214 0 19 chr1 198250099 198250202 -83943462 + (TA)n Simple_repeat Simple_repeat 2 102 0 317 214 34 34 chr1 198250204 198250293 -83943371 - L1MC4 LINE L1 -1340 6702 6614 254 211 39 0 chr1 198250293 198250345 -83943319 + (TACG)n Simple_repeat Simple_repeat 2 55 0 268 298 0 21 chr1 198250346 198250440 -83943224 - L1MC4 LINE L1 -1346 6696 6605 514 188 0 0 chr1 198250530 198250610 -83943054 - Tigger3(Golem) DNA MER2_type -2949 80 1 346 231 154 0 chr1 198250685 198250776 -83942888 + L2 LINE L2 3191 3295 -18 823 119 8 24 chr1 198254047 198254173 -83939491 - FLAM_C SINE Alu -14 129 6 321 267 137 56 chr1 198254337 198254607 -83939057 - L1ME LINE L1 -298 5823 5532 592 229 38 23 chr1 198254696 198254827 -83938837 - MIR SINE MIR -127 135 3 232 325 56 44 chr1 198254963 198255123 -83938541 - L2 LINE L2 -18 3295 3134 204 336 0 64 chr1 198255221 198255331 -83938333 - L2 LINE L2 -253 3019 2917 240 377 0 0 chr1 198255631 198255700 -83937964 + L2 LINE L2 349 417 -2897 246 236 94 66 chr1 198255944 198256050 -83937614 + L2 LINE L2 722 830 -2484 4764 132 34 48 chr1 198256171 198257088 -83936576 + L1PA16 LINE L1 5254 6157 -9 303 218 13 0 chr1 198257349 198257427 -83936237 + MER116 DNA Mariner 2 80 0 2061 115 3 0 chr1 198258350 198258637 -83935027 + AluSx SINE Alu 1 288 -24 3142 166 70 62 chr1 198258877 198259618 -83934046 + MER4E LTR ERV1 1 747 -32 314 183 0 0 chr1 198259624 198259684 -83933980 + MER4E LTR ERV1 720 779 0 296 298 80 38 chr1 198259870 198260345 -83933319 + L1ME3A LINE L1 1396 1928 -4793 1035 88 0 50 chr1 198260425 198260584 -83933080 + AluSg/x SINE Alu 154 304 -6 531 271 208 21 chr1 198260939 198261508 -83932156 + L1ME3A LINE L1 2442 3123 -3417 781 271 133 21 chr1 198261519 198262323 -83931341 + L1ME3A LINE L1 5447 6346 -218 1918 129 16 39 chr1 198262740 198262871 -83930793 + AluSc SINE Alu 1 133 -176 2117 78 7 11 chr1 198262871 198263182 -83930482 + AluY SINE Alu 1 310 0 1918 129 16 39 chr1 198263182 198263358 -83930306 + AluSc SINE Alu 133 302 -7 40 0 0 0 chr1 198263667 198263707 -83929957 + AT_rich Low_complexity Low_complexity 1 40 0 1072 246 22 97 chr1 198264607 198264712 -83928952 + Charlie1a DNA MER1_type 3 114 -2647 1700 164 20 7 chr1 198264712 198265010 -83928654 + AluJb SINE Alu 1 302 -10 1072 246 22 97 chr1 198265010 198265306 -83928358 + Charlie1a DNA MER1_type 114 374 -1081 990 138 44 12 chr1 198265317 198265477 -83928187 + MER61B LTR ERV1 261 425 0 2621 111 37 54 chr1 198265876 198266361 -83927303 + MER61B-int LTR ERV1 364 840 -4377 27075 99 33 34 chr1 198266361 198266898 -83926766 + MER61B-int LTR ERV1 958 1494 -3723 2215 123 0 0 chr1 198266898 198267199 -83926465 + AluSx SINE Alu 1 301 -11 27075 99 33 34 chr1 198267199 198268816 -83924848 + MER61B-int LTR ERV1 1494 3112 -2105 294 29 0 0 chr1 198268816 198268851 -83924813 + (TC)n Simple_repeat Simple_repeat 2 36 0 27075 99 33 34 chr1 198268851 198269414 -83924250 + MER61B-int LTR ERV1 3112 3675 -1542 2292 84 7 0 chr1 198269414 198269713 -83923951 + AluSq SINE Alu 1 301 -12 27075 99 33 34 chr1 198269713 198271261 -83922403 + MER61B-int LTR ERV1 3675 5217 0 1813 160 0 4 chr1 198271261 198271542 -83922122 + MER61B LTR ERV1 1 280 -145 1700 186 13 13 chr1 198271735 198272041 -83921623 - AluJb SINE Alu -6 306 1 1103 187 69 21 chr1 198272151 198272529 -83921135 + L1MDa LINE L1 2289 2677 -3863 4104 253 106 33 chr1 198272589 198273134 -83920530 + L1MDa LINE L1 3063 3566 -2998 315 49 0 0 chr1 198273134 198273175 -83920489 + (GA)n Simple_repeat Simple_repeat 1 41 0 4104 253 106 33 chr1 198273175 198273684 -83919980 + L1MDa LINE L1 3566 4036 -2528 315 200 136 100 chr1 198273684 198273794 -83919870 + MER81 DNA DNA 1 114 0 4104 253 106 33 chr1 198273794 198275799 -83917865 + L1MDa LINE L1 4036 6344 -220 1234 271 110 38 chr1 198276325 198276826 -83916838 + MLT1F LTR MaLR 6 542 0 569 100 0 0 chr1 198277918 198277998 -83915666 - AluY SINE Alu -19 292 213 21 0 0 0 chr1 198278399 198278420 -83915244 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 198278911 198278939 -83914725 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 198279095 198279126 -83914538 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 198279815 198279837 -83913827 + AT_rich Low_complexity Low_complexity 1 22 0 372 324 54 11 chr1 198279996 198280156 -83913508 - MER5A DNA MER1_type -14 167 2 203 276 13 40 chr1 198281145 198281221 -83912443 - MIR3 SINE MIR -11 197 124 1227 62 17 6 chr1 198281254 198281432 -83912232 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1245 170 129 17 chr1 198282046 198282287 -83911377 + AluJb SINE Alu 27 294 -18 1902 142 21 0 chr1 198282462 198282751 -83910913 - AluSg SINE Alu -15 295 1 380 323 15 8 chr1 198282994 198283127 -83910537 + Charlie2 DNA MER1_type 8 141 -2641 462 155 0 0 chr1 198283336 198283407 -83910257 + Charlie2 DNA MER1_type 1856 1926 -936 4724 168 59 8 chr1 198283420 198284303 -83909361 - L1P LINE L1 -1814 4332 3405 3434 106 20 4 chr1 198284303 198284813 -83908851 + L1PA13 LINE L1 5646 6163 0 32 26 0 0 chr1 198284916 198284955 -83908709 + AT_rich Low_complexity Low_complexity 1 39 0 206 121 0 0 chr1 198285332 198285365 -83908299 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 953 258 72 69 chr1 198285379 198286927 -83906737 + L1MEc LINE L1 1074 2677 -3538 1943 137 14 0 chr1 198286927 198287212 -83906452 + AluSx SINE Alu 1 289 -23 953 258 72 69 chr1 198287212 198287417 -83906247 + L1MEc LINE L1 2677 2880 -3335 460 176 20 10 chr1 198287388 198287490 -83906174 + L1ME LINE L1 38 140 -6256 * 1446 207 49 14 chr1 198287470 198287837 -83905827 + L1ME LINE L1 497 876 -5520 1858 259 100 26 chr1 198287840 198288639 -83905025 + L1ME LINE L1 1116 1998 -4398 2238 121 0 3 chr1 198288639 198288952 -83904712 - AluSx SINE Alu 0 312 1 1858 259 100 26 chr1 198288952 198289103 -83904561 + L1ME LINE L1 1998 2136 -4260 252 237 0 0 chr1 198289097 198289156 -83904508 + L1ME LINE L1 2837 2895 -3320 * 351 240 69 46 chr1 198289180 198289432 -83904232 + L1ME LINE L1 5324 5566 -669 411 103 0 0 chr1 198290276 198290344 -83903320 - L1PA8 LINE L1 0 6172 6105 2385 79 0 7 chr1 198290344 198290816 -83902848 + L1PA8A LINE L1 5055 5524 -607 1086 283 89 40 chr1 198290829 198291303 -83902361 - HAL1 LINE L1 -1995 512 16 1193 148 65 110 chr1 198291318 198291628 -83902036 + AluJo SINE Alu 1 296 -6 761 159 0 23 chr1 198293387 198293519 -83900145 - FLAM_C SINE Alu -1 142 14 615 282 62 35 chr1 198294321 198294548 -83899116 + MLT1L LTR MaLR 3 235 -380 463 276 138 32 chr1 198294596 198294842 -83898822 + MLT1L LTR MaLR 344 615 0 278 310 31 23 chr1 198294882 198295039 -83898625 - MIR SINE MIR -26 182 32 437 0 0 19 chr1 198295365 198295419 -83898245 + (TG)n Simple_repeat Simple_repeat 2 54 0 1777 120 36 0 chr1 198295448 198295733 -83897931 + AluSx SINE Alu 25 318 0 1670 171 7 0 chr1 198296127 198296436 -83897228 - AluJb SINE Alu 0 311 1 1642 190 3 3 chr1 198296666 198296961 -83896703 + AluJo SINE Alu 1 295 -17 200 231 19 19 chr1 198297361 198297413 -83896251 + L2 LINE L2 3181 3232 -40 360 0 0 0 chr1 198297418 198297458 -83896206 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 794 306 47 13 chr1 198297722 198297954 -83895710 + MIR SINE MIR 2 241 -21 2251 95 0 3 chr1 198298074 198298368 -83895296 - AluSg SINE Alu -17 293 1 540 160 0 0 chr1 198298438 198298538 -83895126 + GA-rich Low_complexity Low_complexity 4 103 0 222 37 0 0 chr1 198298543 198298570 -83895094 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 1076 229 93 28 chr1 198298909 198299380 -83894284 + Charlie2 DNA MER1_type 1857 2358 -504 11952 106 32 13 chr1 198299464 198300855 -83892809 - Tigger1 DNA MER2_type -1 2417 981 2436 82 0 0 chr1 198300855 198301160 -83892504 + AluY SINE Alu 1 305 -6 11952 106 32 13 chr1 198301160 198301587 -83892077 - Tigger1 DNA MER2_type -1437 981 564 770 160 56 21 chr1 198301613 198301757 -83891907 - Tigger1 DNA MER2_type -2269 149 1 906 246 31 71 chr1 198301757 198302072 -83891592 + Charlie2 DNA MER1_type 2433 2726 -136 1552 196 29 7 chr1 198302072 198302353 -83891311 - AluJo SINE Alu -25 287 1 906 246 31 71 chr1 198302353 198302485 -83891179 + Charlie2 DNA MER1_type 2726 2862 0 2214 112 3 10 chr1 198303042 198303354 -83890310 + AluSg SINE Alu 1 310 0 1808 164 10 17 chr1 198303365 198303664 -83890000 + AluJb SINE Alu 1 297 -15 2133 130 3 0 chr1 198303717 198304025 -83889639 + AluSx SINE Alu 1 309 -3 2226 138 0 21 chr1 198305352 198305686 -83887978 - MER1B DNA MER1_type 0 339 13 26 30 0 0 chr1 198305719 198305752 -83887912 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 198305884 198305905 -83887759 + AT_rich Low_complexity Low_complexity 1 21 0 1672 180 37 0 chr1 198306553 198306848 -83886816 + AluJo SINE Alu 6 311 -1 542 271 144 21 chr1 198306858 198307142 -83886522 + L1ME4a LINE L1 5495 5813 -308 201 167 0 0 chr1 198307347 198307383 -83886281 + A-rich Low_complexity Low_complexity 1 36 0 312 261 127 25 chr1 198307383 198307628 -83886036 + L1ME4a LINE L1 5852 6121 0 711 165 160 105 chr1 198308316 198308516 -83885148 + AluJb SINE Alu 86 296 -16 261 111 0 0 chr1 198308581 198308617 -83885047 + Alu SINE Alu 1 36 -263 526 217 147 15 chr1 198308718 198308916 -83884748 - L1MEc LINE L1 -3063 3363 3140 1883 141 62 0 chr1 198308925 198309231 -83884433 - L1PA16 LINE L1 -36 6130 5806 1284 248 107 10 chr1 198309233 198309738 -83883926 - L1MEc LINE L1 -3276 3150 2597 339 152 38 0 chr1 198309739 198309818 -83883846 + CT-rich Low_complexity Low_complexity 2 83 0 1851 151 3 39 chr1 198309823 198310135 -83883529 - AluJb SINE Alu -11 301 1 962 232 54 56 chr1 198310135 198310274 -83883390 - L1MEc LINE L1 -3963 2644 2506 2142 117 0 0 chr1 198310274 198310572 -83883092 - AluSc SINE Alu -11 298 1 962 232 54 56 chr1 198310572 198310909 -83882755 - L1MEc LINE L1 -4101 2506 2169 3047 180 48 57 chr1 198310993 198311804 -83881860 - L1MB7 LINE L1 -32 6152 5349 23 33 0 0 chr1 198312975 198313005 -83880659 + AT_rich Low_complexity Low_complexity 1 30 0 187 273 127 27 chr1 198313720 198313830 -83879834 + MIR SINE MIR 86 206 -56 1364 168 4 13 chr1 198314580 198314818 -83878846 + MER46A DNA MER2_type 1 236 0 814 256 28 4 chr1 198315240 198315494 -83878170 - L1MEc LINE L1 -4573 2034 1775 590 279 84 25 chr1 198315714 198316072 -83877592 - L1MEc LINE L1 -4848 1578 1200 243 103 0 0 chr1 198316073 198316112 -83877552 + (TG)n Simple_repeat Simple_repeat 2 40 0 1633 146 56 7 chr1 198316127 198316415 -83877249 - Tigger1 DNA MER2_type -2039 379 78 1576 219 14 30 chr1 198316731 198317097 -83876567 - MLT1A1 LTR MaLR -5 360 1 528 321 75 0 chr1 198317164 198317347 -83876317 - MIR SINE MIR -27 235 40 690 164 0 0 chr1 198317399 198317503 -83876161 + FLAM_C SINE Alu 12 115 -28 252 0 0 0 chr1 198317506 198317534 -83876130 + (CA)n Simple_repeat Simple_repeat 2 29 0 301 269 0 32 chr1 198317550 198317643 -83876021 + L1MC4 LINE L1 6614 6703 -1339 973 160 0 7 chr1 198317654 198317804 -83875860 + AluJb SINE Alu 144 292 -20 1037 242 112 12 chr1 198318018 198318348 -83875316 + L2 LINE L2 2425 2787 -527 853 175 8 143 chr1 198318376 198318628 -83875036 - AluJb SINE Alu -9 303 86 494 274 80 75 chr1 198319064 198319462 -83874202 - MLT1J LTR MaLR 0 511 112 518 270 167 11 chr1 198319543 198319717 -83873947 + MIR SINE MIR 3 203 -59 37 16 0 48 chr1 198320777 198320840 -83872824 + AT_rich Low_complexity Low_complexity 1 60 0 3765 139 42 12 chr1 198320861 198321528 -83872136 - L1MB2 LINE L1 -34 6137 5451 952 199 52 24 chr1 198322336 198322547 -83871117 - MER20 DNA MER1_type -1 218 2 229 244 104 78 chr1 198322555 198322670 -83870994 + MIR SINE MIR 17 134 -128 2376 64 3 16 chr1 198323063 198323376 -83870288 - AluSc SINE Alu 0 309 1 21 0 0 0 chr1 198324385 198324406 -83869258 + AT_rich Low_complexity Low_complexity 1 21 0 236 284 95 32 chr1 198324684 198324779 -83868885 - L2 LINE L2 0 3272 3172 1689 181 7 10 chr1 198325188 198325487 -83868177 - AluJb SINE Alu -14 298 1 2087 122 7 3 chr1 198325636 198325931 -83867733 - AluSx SINE Alu -16 296 1 27 29 0 0 chr1 198325936 198325970 -83867694 + AT_rich Low_complexity Low_complexity 1 34 0 364 161 0 62 chr1 198325970 198326051 -83867613 - AluS SINE Alu -225 77 2 1336 100 0 6 chr1 198326086 198326266 -83867398 - AluSq SINE Alu -30 283 105 920 229 87 60 chr1 198326372 198326888 -83866776 + L1ME1 LINE L1 3118 3647 -2499 799 154 0 22 chr1 198326892 198327063 -83866601 + FLAM_C SINE Alu 1 168 0 538 219 59 71 chr1 198327124 198327293 -83866371 + MLT1B LTR MaLR 1 167 -223 1037 190 5 32 chr1 198327348 198327569 -83866095 + AluJo SINE Alu 85 299 -13 848 139 7 0 chr1 198327570 198327707 -83865957 + MLT1B LTR MaLR 253 390 0 2751 238 69 37 chr1 198327838 198329170 -83864494 + L1ME1 LINE L1 4168 5743 -591 2036 136 0 3 chr1 198329170 198329472 -83864192 + AluY SINE Alu 1 301 -10 2751 238 69 37 chr1 198329472 198330084 -83863580 + L1ME1 LINE L1 5743 6334 0 895 254 42 0 chr1 198330140 198330357 -83863307 + MIR SINE MIR 11 236 -26 243 381 40 17 chr1 198330519 198330692 -83862972 - MLT1K LTR MaLR -342 246 70 244 191 7 0 chr1 198331041 198331088 -83862576 - Alu SINE Alu -190 112 71 1240 159 0 63 chr1 198331147 198331399 -83862265 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr1 198331500 198331530 -83862134 + AT_rich Low_complexity Low_complexity 1 30 0 2096 131 7 0 chr1 198332320 198332618 -83861046 - AluJb SINE Alu -8 304 5 737 180 0 8 chr1 198332692 198332820 -83860844 + FLAM_A SINE Alu 8 134 -8 2567 34 0 0 chr1 198333189 198333487 -83860177 + AluY SINE Alu 1 298 -13 200 326 147 11 chr1 198334256 198334351 -83859313 + MIR SINE MIR 18 125 -83 2012 91 0 28 chr1 198334778 198335064 -83858600 + AluSx SINE Alu 8 285 -27 24 67 0 0 chr1 198337380 198337425 -83856239 + GC_rich Low_complexity Low_complexity 1 45 0 1528 114 29 82 chr1 198338290 198338596 -83855068 + AluJb SINE Alu 4 293 -19 1612 167 52 25 chr1 198338686 198338930 -83854734 - MER65A LTR ERV1 -44 401 142 2202 122 0 0 chr1 198338930 198339226 -83854438 + AluSx SINE Alu 1 296 -16 1612 167 52 25 chr1 198339226 198339346 -83854318 - MER65A LTR ERV1 -303 142 27 695 209 0 73 chr1 198339484 198339661 -83854003 - FAM SINE Alu -8 167 4 218 344 0 16 chr1 198339936 198340000 -83853664 + L2 LINE L2 3163 3225 -47 375 204 73 10 chr1 198340303 198340444 -83853220 - MER5A DNA MER1_type -3 186 1 2155 118 0 35 chr1 198340449 198340764 -83852900 + AluSx SINE Alu 1 304 -8 2052 117 0 4 chr1 198340818 198341092 -83852572 + AluSx SINE Alu 1 273 -39 1205 189 166 14 chr1 198341122 198341466 -83852198 + MSTD LTR MaLR 1 396 0 2338 105 0 0 chr1 198342242 198342547 -83851117 + AluSg SINE Alu 1 305 -5 1375 197 60 11 chr1 198342565 198342849 -83850815 + AluJo SINE Alu 1 298 -14 949 157 45 0 chr1 198343501 198343679 -83849985 - MER46A DNA MER2_type -4 232 47 716 186 14 0 chr1 198344747 198344887 -83848777 + MLT1B LTR MaLR 249 390 0 809 188 0 0 chr1 198345252 198345385 -83848279 + FLAM_A SINE Alu 1 133 0 417 239 151 112 chr1 198345466 198345687 -83847977 + MLT1K LTR MaLR 14 225 -363 234 0 0 0 chr1 198345687 198345713 -83847951 + (TTG)n Simple_repeat Simple_repeat 2 27 0 417 239 151 112 chr1 198345713 198345849 -83847815 + MLT1K LTR MaLR 225 354 -234 1575 143 23 97 chr1 198345849 198346191 -83847473 + AluYb8 SINE Alu 1 317 -1 417 239 151 112 chr1 198346191 198346322 -83847342 + MLT1K LTR MaLR 354 522 -66 223 330 80 23 chr1 198346393 198346481 -83847183 + L2 LINE L2 3177 3269 -3 205 167 0 0 chr1 198346851 198346887 -83846777 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 607 260 121 13 chr1 198346900 198347131 -83846533 - MLT1H LTR MaLR -12 537 282 1515 209 87 3 chr1 198347228 198347597 -83846067 - MER92B LTR ERV1 0 636 237 274 81 0 0 chr1 198347674 198347711 -83845953 + U7 snRNA snRNA 2 38 -25 992 171 11 23 chr1 198347958 198348133 -83845531 - FAM SINE Alu -2 173 1 334 208 0 14 chr1 198348189 198348261 -83845403 + L1MCa LINE L1 22 92 -6334 1119 195 4 34 chr1 198348291 198348502 -83845162 - MER8 DNA MER2_type -9 230 25 2003 139 50 8 chr1 198348502 198348862 -83844802 + THE1C LTR MaLR 1 375 0 1119 195 4 34 chr1 198348862 198348886 -83844778 - MER8 DNA MER2_type -214 25 2 320 327 37 9 chr1 198349328 198349545 -83844119 - L1M4 LINE L1 -2330 3816 3594 306 253 72 114 chr1 198349586 198349696 -83843968 - L1M4 LINE L1 -2681 3465 3369 1904 149 43 0 chr1 198349696 198349978 -83843686 - AluSg SINE Alu -16 294 1 306 253 72 114 chr1 198349978 198350104 -83843560 - L1M4 LINE L1 -2777 3369 3239 641 160 33 73 chr1 198350262 198350412 -83843252 - AluJb SINE Alu -1 311 168 3054 137 14 10 chr1 198350419 198350917 -83842747 + MER41B LTR ERV1 3 505 -130 1965 122 0 7 chr1 198350917 198351214 -83842450 - AluSx SINE Alu 0 312 35 3054 137 14 10 chr1 198351214 198351232 -83842432 + MER41B LTR ERV1 505 521 -114 364 171 26 0 chr1 198351236 198351312 -83842352 - MER51A LTR ERV1 -87 547 470 740 84 9 0 chr1 198351312 198351419 -83842245 + MER41B LTR ERV1 512 619 -16 697 208 31 0 chr1 198351420 198351550 -83842114 - AluJb SINE Alu -130 182 49 514 284 113 78 chr1 198351561 198352089 -83841575 - L1MEd LINE L1 -1064 1426 853 489 230 61 7 chr1 198352178 198352326 -83841338 - L1MA10 LINE L1 -2 6332 6177 2087 137 13 19 chr1 198353064 198353378 -83840286 + AluJo SINE Alu 1 312 0 2161 137 0 3 chr1 198353900 198354213 -83839451 + AluSx SINE Alu 1 312 0 1880 156 87 81 chr1 198354242 198354559 -83839105 + LTR54 LTR ERV1 1 324 -186 953 183 24 0 chr1 198354559 198354723 -83838941 + FAM SINE Alu 1 168 -7 1880 156 87 81 chr1 198354723 198354912 -83838752 + LTR54 LTR ERV1 324 510 0 1084 199 141 93 chr1 198354969 198355508 -83838156 + L1M4b LINE L1 568 1213 -5646 333 0 0 0 chr1 198355508 198355545 -83838119 + (TG)n Simple_repeat Simple_repeat 2 38 0 1084 199 141 93 chr1 198355545 198355725 -83837939 + L1M4b LINE L1 1213 1383 -5476 3959 149 22 22 chr1 198355725 198356298 -83837366 + MER50 LTR ERV1 1 577 -157 1983 136 4 0 chr1 198356298 198356598 -83837066 - AluSx SINE Alu 0 301 1 3959 149 22 22 chr1 198356598 198356734 -83836930 + MER50 LTR ERV1 576 711 -23 1080 178 77 24 chr1 198356734 198356904 -83836760 + L1M4b LINE L1 1379 1572 -5287 2124 125 0 19 chr1 198356904 198357215 -83836449 + AluSx SINE Alu 1 305 -7 1080 178 77 24 chr1 198357215 198357331 -83836333 + L1M4b LINE L1 1572 1680 -5179 245 239 30 0 chr1 198357361 198357428 -83836236 + L1M4b LINE L1 1658 1726 -5233 817 183 13 0 chr1 198357429 198357582 -83836082 + MER6B DNA MER2_type 2 156 -54 1367 211 68 75 chr1 198357630 198358071 -83835593 - LTR54 LTR ERV1 -72 438 1 1712 252 50 8 chr1 198358071 198358498 -83835166 - L1MEc LINE L1 -3154 3061 2653 1668 180 9 25 chr1 198358498 198358814 -83834850 - AluJo SINE Alu -1 311 1 1712 252 50 8 chr1 198358814 198359200 -83834464 - L1MEc LINE L1 -3562 2653 2152 4904 216 91 9 chr1 198359284 198360447 -83833217 + L1PA13 LINE L1 3 1261 -5526 2668 161 9 0 chr1 198360470 198360918 -83832746 + L1PA13 LINE L1 1410 1861 -4926 2031 100 148 6 chr1 198360918 198361269 -83832395 + MSTA LTR MaLR 1 401 -27 20187 79 7 3 chr1 198362038 198364918 -83828746 - L1PA7 LINE L1 0 6154 3257 2478 84 0 0 chr1 198364918 198365229 -83828435 - AluY SINE Alu 0 311 1 20187 79 7 3 chr1 198365229 198365954 -83827710 - L1PA7 LINE L1 -2897 3257 2537 2278 147 55 14 chr1 198365954 198366389 -83827275 + L1MC3 LINE L1 7108 7560 -225 2065 123 0 3 chr1 198366397 198366750 -83826914 - AluSx SINE Alu 0 352 1 2677 215 35 44 chr1 198366754 198367470 -83826194 - L1M4 LINE L1 -784 5780 5072 2436 64 27 0 chr1 198367470 198367768 -83825896 + AluY SINE Alu 1 306 -5 2677 215 35 44 chr1 198367768 198367957 -83825707 - L1M4 LINE L1 -1492 5072 4883 6077 237 37 61 chr1 198367970 198368144 -83825520 - L1MCa LINE L1 -1647 4917 4740 25 0 0 0 chr1 198368144 198368169 -83825495 + AT_rich Low_complexity Low_complexity 1 25 0 6077 237 37 61 chr1 198368169 198368241 -83825423 - L1MCa LINE L1 -1824 4740 4668 360 0 0 0 chr1 198368241 198368281 -83825383 + (TG)n Simple_repeat Simple_repeat 2 41 0 6077 237 37 61 chr1 198368281 198368525 -83825139 - L1MCa LINE L1 -1896 4668 4420 1732 185 3 7 chr1 198368525 198368827 -83824837 - AluJo SINE Alu -11 301 1 6077 237 37 61 chr1 198368827 198369568 -83824096 - L1MCa LINE L1 -2144 4420 3663 861 159 0 0 chr1 198369568 198369700 -83823964 + FLAM_C SINE Alu 2 133 0 6077 237 37 61 chr1 198369700 198371213 -83822451 - L1MCa LINE L1 -2901 3663 2132 3874 163 17 28 chr1 198371213 198371926 -83821738 - MER44D DNA MER2_type 0 705 1 6077 237 37 61 chr1 198371926 198373036 -83820628 - L1MCa LINE L1 -4432 2132 997 3018 198 88 31 chr1 198373041 198373779 -83819885 + LTR48 LTR ERV1 7 786 -1 1971 272 66 71 chr1 198373780 198374112 -83819552 - L1MCa LINE L1 -5046 999 667 309 128 0 0 chr1 198374112 198374159 -83819505 - U2 snRNA snRNA -141 47 1 1971 272 66 71 chr1 198374159 198374677 -83818987 - L1MCa LINE L1 -5378 667 108 683 165 31 16 chr1 198374677 198374804 -83818860 - LTR48 LTR ERV1 0 787 659 1238 188 166 6 chr1 198374804 198375129 -83818535 - LTR24C LTR ERV1 0 635 259 853 64 0 107 chr1 198375130 198375270 -83818394 - LTR24C LTR ERV1 -492 143 19 7144 85 17 9 chr1 198375297 198376357 -83817307 - L1MA1 LINE L1 -1 6301 5233 783 217 62 106 chr1 198376385 198376864 -83816800 - LTR29 LTR ERV1 -144 643 4 274 269 28 28 chr1 198376869 198376977 -83816687 - L1MCa LINE L1 -6300 126 19 406 219 20 82 chr1 198376978 198377058 -83816606 - MER97b DNA MER1_type? -874 179 110 1903 166 0 0 chr1 198377058 198377347 -83816317 - AluSx SINE Alu -18 294 6 406 219 20 82 chr1 198377347 198377412 -83816252 - MER97b DNA MER1_type? -943 110 43 257 381 78 55 chr1 198377425 198377769 -83815895 + L2 LINE L2 2915 3266 -6 448 284 100 78 chr1 198377780 198378111 -83815553 + HAL1b LINE L1 486 823 -525 21 57 0 0 chr1 198378819 198378854 -83814810 + AT_rich Low_complexity Low_complexity 1 35 0 927 245 142 37 chr1 198380476 198381090 -83812574 - LTR1B LTR ERV1 0 1020 311 317 278 37 68 chr1 198381376 198381538 -83812126 - HAL1 LINE L1 -1649 858 702 277 297 66 57 chr1 198381559 198381771 -83811893 - HAL1 LINE L1 -1868 639 426 2166 168 44 10 chr1 198381869 198382279 -83811385 + MSTB LTR MaLR 1 424 -2 3124 198 22 7 chr1 198382697 198383410 -83810254 - L1 LINE L1 -1054 5092 4369 1269 129 4 53 chr1 198383423 198383552 -83810112 - L1PB1 LINE L1 -1 6150 6035 2610 36 3 0 chr1 198383552 198383854 -83809810 - AluY SINE Alu -8 303 1 1269 129 4 53 chr1 198383854 198383949 -83809715 - L1PB1 LINE L1 -116 6035 5937 2304 54 13 57 chr1 198384116 198384432 -83809232 + AluY SINE Alu 1 302 -9 558 136 0 73 chr1 198384511 198384621 -83809043 + FRAM SINE Alu 54 155 -21 2273 101 0 0 chr1 198384887 198385185 -83808479 - AluSc SINE Alu -11 298 1 337 301 85 32 chr1 198385542 198385788 -83807876 + L1 LINE L1 3125 3383 -2763 1037 176 5 11 chr1 198386544 198386731 -83806933 - AluJo SINE Alu -126 186 1 1683 189 0 23 chr1 198387262 198387563 -83806101 - AluJb SINE Alu -18 294 1 1183 176 29 137 chr1 198388400 198388810 -83804854 - LTR48B LTR ERV1 -30 614 249 4488 152 6 12 chr1 198388874 198388922 -83804742 - L1MA5 LINE L1 -5 7357 7310 1617 194 13 23 chr1 198388922 198389221 -83804443 - AluJo SINE Alu -16 296 1 4488 152 6 12 chr1 198389221 198389950 -83803714 - L1MA5 LINE L1 -52 7310 6584 626 156 0 0 chr1 198389952 198390042 -83803622 + AluJ/FLAM SINE Alu 1 90 -222 1714 131 27 16 chr1 198390043 198390518 -83803146 - L1MA5 LINE L1 -743 6465 6098 809 108 8 8 chr1 198390543 198390663 -83803001 - LTR48B LTR ERV1 -87 557 438 413 147 0 15 chr1 198390703 198390771 -83802893 - LTR48B LTR ERV1 -140 504 438 1349 176 0 0 chr1 198390771 198391015 -83802649 - L1MA5 LINE L1 -1120 6088 5845 2786 194 64 22 chr1 198391027 198391758 -83801906 - L1MA5 LINE L1 -4105 3104 2343 43097 30 22 1 chr1 198391779 198397805 -83795859 - L1PA2 LINE L1 0 6155 3 2747 214 9 37 chr1 198397833 198398515 -83795149 - L1MA5 LINE L1 -4809 2400 1738 1563 293 60 22 chr1 198398729 198399227 -83794437 - L1MA5 LINE L1 -6567 642 126 409 252 0 42 chr1 198399248 198399367 -83794297 - MER34 LTR ERV1 -428 114 1 270 184 23 11 chr1 198399655 198399742 -83793922 + (TA)n Simple_repeat Simple_repeat 2 89 0 315 382 59 13 chr1 198400014 198400252 -83793412 + L1MEd LINE L1 670 918 -5287 654 259 78 29 chr1 198400339 198400713 -83792951 + L1MEd LINE L1 1287 1678 -4718 654 60 30 0 chr1 198400872 198400972 -83792692 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 3119 220 83 30 chr1 198401001 198401427 -83792237 + MER21B LTR ERV1 13 498 -365 2063 171 33 6 chr1 198401427 198401789 -83791875 - MER83C LTR ERV1 0 373 2 3119 220 83 30 chr1 198401789 198402125 -83791539 + MER21B LTR ERV1 498 815 -48 393 22 0 0 chr1 198402145 198402191 -83791473 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1800 135 57 4 chr1 198402257 198402538 -83791126 - AluSx SINE Alu -16 296 1 2246 110 3 0 chr1 198402576 198402886 -83790778 - AluSx SINE Alu -1 311 1 25 0 0 0 chr1 198403043 198403068 -83790596 + AT_rich Low_complexity Low_complexity 1 25 0 226 333 191 26 chr1 198403196 198403297 -83790367 - L2 LINE L2 -2812 502 419 2833 10 0 0 chr1 198403297 198403605 -83790059 - AluY SINE Alu -3 308 1 226 333 191 26 chr1 198403605 198403848 -83789816 - L2 LINE L2 -2895 419 101 1401 143 22 0 chr1 198405103 198405333 -83788331 - MER46A DNA MER2_type -1 235 1 1789 147 33 20 chr1 198405566 198405866 -83787798 + AluJo SINE Alu 3 306 -6 193 231 0 58 chr1 198405996 198406048 -83787616 - MER5B DNA MER1_type 0 178 130 483 263 177 13 chr1 198406154 198406353 -83787311 - L1ME4a LINE L1 -159 5962 5797 1455 97 0 39 chr1 198406353 198406560 -83787104 - AluY SINE Alu -10 301 103 483 263 177 13 chr1 198406560 198406660 -83787004 - L1ME4a LINE L1 -324 5797 5614 283 286 13 0 chr1 198406683 198406760 -83786904 - MLT1L LTR MaLR -335 280 203 667 226 67 6 chr1 198407024 198407188 -83786476 - MER5A DNA MER1_type 0 189 16 2890 190 49 32 chr1 198407188 198407658 -83786006 - L1MC4a LINE L1 -85 7723 7262 2070 100 0 7 chr1 198407658 198407927 -83785737 - AluSx SINE Alu -25 287 21 2890 190 49 32 chr1 198407927 198408141 -83785523 - L1MC4a LINE L1 -546 7262 5575 29 0 0 0 chr1 198409180 198409209 -83784455 + AT_rich Low_complexity Low_complexity 1 29 0 413 288 197 13 chr1 198409423 198409656 -83784008 - MLT1I LTR MaLR -66 343 68 244 337 24 0 chr1 198409715 198409798 -83783866 - MIR3 SINE MIR -38 170 86 1334 209 38 60 chr1 198410157 198410720 -83782944 - L1MC4a LINE L1 -744 5402 4997 1658 196 3 13 chr1 198410779 198411091 -83782573 + AluJo SINE Alu 3 311 -1 822 153 0 7 chr1 198411091 198411235 -83782429 - L1MB2 LINE L1 -5 6166 6024 1724 175 7 8 chr1 198411235 198411752 -83781912 - L1MB2 LINE L1 -672 5511 4995 22 0 0 0 chr1 198412417 198412439 -83781225 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 198412506 198412526 -83781138 + (TTG)n Simple_repeat Simple_repeat 2 21 0 625 191 0 0 chr1 198412528 198412633 -83781031 - FLAM_C SINE Alu -21 122 18 617 243 107 0 chr1 198412660 198412837 -83780827 + MIR SINE MIR 67 262 0 861 247 85 14 chr1 198412962 198413185 -83780479 + MER69 DNA AcHobo 2 240 -2286 543 205 161 77 chr1 198413190 198413463 -83780201 - MLT1H LTR MaLR -5 544 249 2812 232 62 43 chr1 198413466 198413917 -83779747 - L1MB2 LINE L1 -1348 4798 4357 2112 134 48 20 chr1 198413917 198414268 -83779396 + THE1B LTR MaLR 4 364 0 2812 232 62 43 chr1 198414268 198414730 -83778934 - L1MB2 LINE L1 -1789 4357 3860 2040 181 81 2 chr1 198414730 198415127 -83778537 - MSTA LTR MaLR 0 428 1 2812 232 62 43 chr1 198415127 198415241 -83778423 - L1MB2 LINE L1 -2286 3860 3750 2274 100 6 13 chr1 198415484 198415795 -83777869 - AluSg SINE Alu 0 310 2 23 0 0 0 chr1 198415806 198415829 -83777835 + AT_rich Low_complexity Low_complexity 1 23 0 189 350 0 68 chr1 198416570 198416673 -83776991 - MIR SINE MIR -141 121 26 305 43 43 0 chr1 198417464 198417510 -83776154 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 1006 126 17 0 chr1 198417510 198417685 -83775979 + CT-rich Low_complexity Low_complexity 3 180 0 690 72 0 0 chr1 198417691 198417788 -83775876 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 663 211 0 0 chr1 198417789 198417903 -83775761 - FLAM_C SINE Alu -29 114 1 13176 206 27 29 chr1 198417909 198423063 -83770601 - L1PA15 LINE L1 -1 6815 1553 451 138 0 0 chr1 198423063 198423143 -83770521 - AluJ/FRAM SINE Alu -5 307 228 13176 206 27 29 chr1 198423143 198423539 -83770125 - L1PA15 LINE L1 -5263 1553 1158 2033 149 3 10 chr1 198423570 198423879 -83769785 - AluSp SINE Alu -6 307 1 3956 106 3 13 chr1 198423887 198424521 -83769143 - L1MA3 LINE L1 0 6305 5678 3276 202 11 10 chr1 198424524 198425447 -83768217 - L1MA3 LINE L1 -743 5403 4551 * 12210 204 28 21 chr1 198425441 198426785 -83766879 + L1PB2 LINE L1 2231 3564 -3303 2207 91 7 3 chr1 198426785 198427072 -83766592 + AluSc SINE Alu 1 288 -21 12210 204 28 21 chr1 198427072 198430252 -83763412 + L1PB2 LINE L1 3564 6867 0 272 167 48 12 chr1 198430244 198430328 -83763336 - L1MA3 LINE L1 -1597 4549 4463 * 3453 51 0 0 chr1 198430330 198430758 -83762906 - L1PA6 LINE L1 -3 6151 5724 12685 135 13 17 chr1 198430758 198432932 -83760732 - L1P LINE L1 -3970 2176 10 846 193 0 0 chr1 198432973 198433108 -83760556 - AluJo SINE Alu -177 135 1 388 169 0 0 chr1 198433108 198433197 -83760467 - L1MA3 LINE L1 -1681 4465 4377 419 179 0 0 chr1 198433198 198433265 -83760399 - AluSg/x SINE Alu -24 285 219 570 248 0 0 chr1 198433268 198433413 -83760251 - L1MA3 LINE L1 -3227 2919 2775 1216 183 86 26 chr1 198433418 198433686 -83759978 + MSTA LTR MaLR 143 426 -2 1674 233 5 9 chr1 198433686 198434120 -83759544 - L1MA3 LINE L1 -3365 2781 2350 289 384 63 17 chr1 198434539 198434776 -83758888 - L3 LINE CR1 -1192 385 138 411 271 0 45 chr1 198436406 198436539 -83757125 + L2 LINE L2 3187 3313 0 22 0 0 0 chr1 198436597 198436619 -83757045 + AT_rich Low_complexity Low_complexity 1 22 0 500 228 6 17 chr1 198436630 198436810 -83756854 + (TA)n Simple_repeat Simple_repeat 2 179 0 492 155 0 10 chr1 198437451 198437548 -83756116 - L1P LINE L1 -2411 3735 3640 254 318 68 29 chr1 198437570 198437979 -83755685 + L1MC/D LINE L1 3521 3945 -2201 279 278 42 0 chr1 198438030 198438102 -83755562 - MIR SINE MIR -144 118 44 389 341 84 34 chr1 198438359 198438773 -83754891 + L1MC/D LINE L1 4810 5244 -902 909 286 36 52 chr1 198438784 198439280 -83754384 + L1MC/D LINE L1 5273 5760 -2048 1821 151 0 28 chr1 198439583 198439902 -83753762 + AluJo SINE Alu 1 310 -2 183 129 0 0 chr1 198440633 198440664 -83753000 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 937 64 0 21 chr1 198440664 198440804 -83752860 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 11058 116 31 46 chr1 198442056 198444618 -83749046 - L1P3 LINE L1 -3842 2619 8 24 32 0 0 chr1 198444619 198444650 -83749014 + AT_rich Low_complexity Low_complexity 1 31 0 541 218 0 0 chr1 198444657 198444758 -83748906 - L1MC1 LINE L1 -17 6316 6216 1652 144 27 99 chr1 198444820 198445222 -83748442 - MSTD LTR MaLR -23 373 1 2108 175 36 5 chr1 198445224 198445669 -83747995 - L1MC1 LINE L1 -111 6222 5764 2819 26 0 0 chr1 198445776 198446085 -83747579 + SVA Other Other 862 1170 -216 2277 131 11 5 chr1 198446098 198446472 -83747192 + L1PA16 LINE L1 5769 6144 -22 216 0 0 0 chr1 198446498 198446522 -83747142 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1162 234 38 28 chr1 198446523 198446921 -83746743 + L1MEc LINE L1 1668 2069 -4327 227 152 22 0 chr1 198446927 198446973 -83746691 + A-rich Low_complexity Low_complexity 3 49 0 2604 249 54 34 chr1 198447059 198447862 -83745802 + L1MEc LINE L1 2144 2930 -3285 3024 160 54 2 chr1 198447862 198448363 -83745301 + MER1A DNA MER1_type 1 527 0 2604 249 54 34 chr1 198448363 198448697 -83744967 + L1MEc LINE L1 2930 3280 -2935 1426 24 0 0 chr1 198448697 198448862 -83744802 + L1PA5 LINE L1 5981 6145 -9 2604 249 54 34 chr1 198448862 198449104 -83744560 + L1MEc LINE L1 3280 3516 -2699 534 89 0 13 chr1 198449290 198449369 -83744295 + L1P3 LINE L1 96 173 -5702 11401 170 10 32 chr1 198449371 198450789 -83742875 + L1P3 LINE L1 304 1753 -4708 2185 147 0 0 chr1 198450789 198451101 -83742563 + AluSx SINE Alu 1 312 0 11401 170 10 32 chr1 198451101 198453012 -83740652 + L1P3 LINE L1 1753 3599 -2862 5502 31 3 0 chr1 198453007 198453688 -83739976 + L1PA4 LINE L1 5451 6133 -22 * 950 285 32 18 chr1 198453795 198454301 -83739363 - L1P LINE L1 -5632 514 2 2254 117 0 16 chr1 198454321 198454638 -83739026 - AluSx SINE Alu 0 312 1 1140 102 0 40 chr1 198454639 198454816 -83738848 + MSTB1 LTR MaLR 263 432 0 2011 164 39 0 chr1 198454822 198455211 -83738453 - L1M4 LINE L1 -501 5683 5280 349 366 48 19 chr1 198455869 198456350 -83737314 + L2 LINE L2 1276 1770 -1544 3868 186 4 20 chr1 198456493 198457230 -83736434 - LTR39 LTR ERV1 0 783 59 222 91 0 0 chr1 198457573 198457606 -83736058 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 27 49 0 0 chr1 198458365 198458406 -83735258 + AT_rich Low_complexity Low_complexity 1 41 0 29 84 0 0 chr1 198459124 198459195 -83734469 + AT_rich Low_complexity Low_complexity 1 71 0 24 85 0 0 chr1 198459232 198459291 -83734373 + AT_rich Low_complexity Low_complexity 1 59 0 33 25 0 0 chr1 198459411 198459451 -83734213 + AT_rich Low_complexity Low_complexity 1 40 0 281 390 22 4 chr1 198459540 198459768 -83733896 - LOR1-int LTR ERV1 -506 7614 7383 286 342 35 32 chr1 198459865 198460261 -83733403 - LOR1-int LTR ERV1 -830 7290 6135 40357 38 22 2 chr1 198460406 198466464 -83727200 + L1PA3 LINE L1 3 6180 0 553 262 25 102 chr1 198466848 198467123 -83726541 - MLT1K LTR MaLR 0 588 335 1457 212 53 95 chr1 198467387 198467621 -83726043 + L1M4 LINE L1 3469 3711 -2435 271 81 0 0 chr1 198467621 198467658 -83726006 + tRNA-Ile-ATT tRNA tRNA 3 39 -38 1457 212 53 95 chr1 198467658 198468079 -83725585 + L1M4 LINE L1 3711 4131 -2015 1961 162 13 3 chr1 198468159 198468467 -83725197 + AluJb SINE Alu 1 311 -1 1879 170 16 33 chr1 198468697 198469186 -83724478 - pTR5 LTR ERV1 -1215 1223 743 270 279 77 0 chr1 198469191 198469295 -83724369 + MLT1L LTR MaLR 502 613 -2 1533 217 53 32 chr1 198469763 198470218 -83723446 + Charlie1b DNA MER1_type 1 470 -2291 2199 117 3 0 chr1 198470218 198470517 -83723147 - AluSx SINE Alu -12 300 1 1533 217 53 32 chr1 198470517 198470568 -83723096 + Charlie1b DNA MER1_type 470 518 -5 4945 152 30 17 chr1 198470839 198473370 -83720294 - L1MA9 LINE L1 0 7272 4641 614 14 0 0 chr1 198473370 198473443 -83720221 - L1PA3 LINE L1 -8 6147 6075 4945 152 30 17 chr1 198473443 198473688 -83719976 - L1MA9 LINE L1 -2631 4641 4400 699 168 24 12 chr1 198473713 198473880 -83719784 - L1MA9 LINE L1 -2687 4419 4251 635 281 9 5 chr1 198473878 198474095 -83719569 - L1MA9 LINE L1 -4969 2061 1844 * 327 321 67 43 chr1 198474582 198474881 -83718783 - L1MA9 LINE L1 -5829 1208 903 448 266 21 7 chr1 198475389 198475532 -83718132 + L1MEd LINE L1 600 744 -5375 28383 93 7 10 chr1 198475795 198480103 -83713561 + L1P LINE L1 601 4896 -1250 363 73 0 0 chr1 198480203 198480258 -83713406 + L1PA13 LINE L1 6109 6163 0 5689 98 17 2 chr1 198480261 198481127 -83712537 + L1P LINE L1 3262 4140 -2006 931 176 8 141 chr1 198481128 198481383 -83712281 - AluJo SINE Alu -87 225 5 496 229 8 0 chr1 198481388 198481510 -83712154 + L1M4 LINE L1 4092 4214 -1932 21 36 0 0 chr1 198481626 198481654 -83712010 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 198482528 198482551 -83711113 + AT_rich Low_complexity Low_complexity 1 23 0 1625 184 10 33 chr1 198483291 198483590 -83710074 + AluJo SINE Alu 6 297 -15 1137 280 97 48 chr1 198483923 198484488 -83709176 + MLT1E LTR MaLR 1 593 0 596 236 17 28 chr1 198484493 198484671 -83708993 + MLT1E-int LTR MaLR 24 199 -1172 567 312 74 30 chr1 198485329 198485560 -83708104 - MIR SINE MIR -15 247 7 388 268 73 0 chr1 198485580 198485703 -83707961 - MIR SINE MIR -12 250 119 359 268 0 0 chr1 198486750 198486832 -83706832 + MER81 DNA DNA 31 112 -2 23 0 0 0 chr1 198486889 198486912 -83706752 + AT_rich Low_complexity Low_complexity 1 23 0 1786 237 38 4 chr1 198487823 198488275 -83705389 + MLT1C LTR MaLR 1 467 0 204 256 23 0 chr1 198488612 198488655 -83705009 + L2 LINE L2 3010 3053 -219 954 114 0 0 chr1 198488693 198488842 -83704822 + L1MA5A LINE L1 6149 6297 0 1107 262 156 45 chr1 198488858 198489442 -83704222 + MER21B LTR ERV1 59 707 -156 990 280 128 32 chr1 198489586 198490047 -83703617 + MLT1K LTR MaLR 82 586 -2 211 344 98 22 chr1 198490060 198490243 -83703421 + L2 LINE L2 3073 3269 -3 374 270 64 52 chr1 198490338 198490499 -83703165 + MIR3 SINE MIR 5 171 -64 2303 91 10 0 chr1 198490555 198490853 -83702811 + AluSp SINE Alu 1 301 -12 182 204 0 37 chr1 198492167 198492221 -83701443 + A-rich Low_complexity Low_complexity 4 55 0 912 217 0 0 chr1 198493165 198493331 -83700333 - AluJb SINE Alu -12 300 135 5164 153 78 15 chr1 198493976 198494238 -83699426 + L1MA5 LINE L1 4128 4372 -1928 1909 171 20 0 chr1 198494238 198494536 -83699128 + AluSx SINE Alu 1 304 -8 5164 153 78 15 chr1 198494536 198494838 -83698826 + L1MA5 LINE L1 4372 4654 -1646 225 94 0 0 chr1 198494838 198494870 -83698794 + (CACAT)n Simple_repeat Simple_repeat 2 33 0 5164 153 78 15 chr1 198494870 198495404 -83698260 + L1MA5 LINE L1 4654 5153 -1147 339 44 0 0 chr1 198495404 198495449 -83698215 + (CA)n Simple_repeat Simple_repeat 2 46 0 5164 153 78 15 chr1 198495449 198496225 -83697439 + L1MA5 LINE L1 5153 6125 -175 297 0 0 0 chr1 198496250 198496283 -83697381 + (TG)n Simple_repeat Simple_repeat 1 33 0 1026 173 147 5 chr1 198496383 198496580 -83697084 - AluJo SINE Alu -86 226 2 963 139 0 36 chr1 198496580 198496774 -83696890 + L1MA5 LINE L1 6111 6297 -3 1113 222 0 4 chr1 198496788 198497013 -83696651 + MLT1A1 LTR MaLR 142 365 0 686 288 81 26 chr1 198497018 198497365 -83696299 + L2 LINE L2 2329 2694 -620 2575 226 67 42 chr1 198497400 198498262 -83695402 - L1MC4 LINE L1 -655 7387 6504 333 268 0 0 chr1 198498453 198498524 -83695140 + L2 LINE L2 3243 3313 0 730 288 5 14 chr1 198499604 198499816 -83693848 + MER63A DNA MER1_type 1 210 0 213 194 0 0 chr1 198502064 198502100 -83691564 + (ATG)n Simple_repeat Simple_repeat 3 38 0 346 233 62 47 chr1 198502190 198502319 -83691345 - MLT1K LTR MaLR -2 586 456 252 272 40 45 chr1 198504023 198504225 -83689439 - L1MCa LINE L1 -4655 1952 1752 414 321 25 77 chr1 198504274 198504560 -83689104 - L1MCa LINE L1 -1070 1717 1190 6852 57 3 14 chr1 198504560 198505856 -83687808 - L1PA6 LINE L1 -2 6152 4843 2109 129 41 21 chr1 198505956 198506343 -83687321 - L1MC/D LINE L1 -656 5677 5283 * 4752 108 4 1 chr1 198506340 198507077 -83686587 - L1PA14 LINE L1 0 6161 5423 * 17198 212 20 28 chr1 198507068 198514322 -83679342 - L1P4 LINE L1 -674 6925 266 3324 235 29 13 chr1 198514319 198515319 -83678345 - L1MC/D LINE L1 -1184 4962 3947 * 1938 157 99 8 chr1 198517058 198517421 -83676243 - MSTD LTR MaLR 0 396 1 237 299 82 45 chr1 198517675 198517809 -83675855 + L3 LINE CR1 252 390 -1187 1054 159 22 66 chr1 198517828 198518009 -83675655 + AluJo SINE Alu 90 261 -51 2306 118 16 29 chr1 198518009 198518389 -83675275 - THE1C LTR MaLR 0 375 1 1054 159 22 66 chr1 198518389 198518434 -83675230 + AluJo SINE Alu 261 306 -6 364 264 96 56 chr1 198518452 198518630 -83675034 - MIR3 SINE MIR -10 198 14 1735 283 111 42 chr1 198518637 198519382 -83674282 + L3 LINE CR1 460 1256 -321 201 323 212 10 chr1 198519407 198519506 -83674158 - L2 LINE L2 -1 3271 3153 197 321 82 45 chr1 198519504 198519638 -83674026 + MER5A DNA MER1_type 8 146 -43 * 463 309 23 39 chr1 198519726 198519982 -83673682 + L3 LINE CR1 1257 1508 -69 1015 248 95 39 chr1 198520832 198521244 -83672420 + LTR16A LTR ERVL 16 450 0 21 57 0 0 chr1 198522540 198522575 -83671089 + AT_rich Low_complexity Low_complexity 1 35 0 884 352 47 34 chr1 198522815 198523846 -83669818 - PABL_B-int LTR ERV1 -3127 3995 3200 274 328 51 51 chr1 198524023 198524258 -83669406 - PABL_B-int LTR ERV1 -4123 2999 2765 262 368 13 25 chr1 198524541 198524856 -83668808 - PABL_B-int LTR ERV1 -5855 1267 957 4224 180 4 41 chr1 198525865 198526502 -83667162 - LTR39 LTR ERV1 0 783 124 2314 84 7 0 chr1 198526502 198526798 -83666866 - AluSq SINE Alu -15 298 1 1823 117 0 0 chr1 198526804 198527051 -83666613 - AluSg SINE Alu -10 300 54 4224 180 4 41 chr1 198527051 198527219 -83666445 - LTR39 LTR ERV1 -664 119 1 958 330 130 26 chr1 198527299 198528175 -83665489 - L2 LINE L2 -453 2861 1895 262 0 0 0 chr1 198528207 198528247 -83665417 - L1PA2 LINE L1 0 6155 6116 239 238 0 18 chr1 198528269 198528331 -83665333 - MIR SINE MIR -119 89 28 314 388 13 7 chr1 198528694 198528846 -83664818 - L2 LINE L2 -276 3037 2885 272 148 56 0 chr1 198528977 198529031 -83664633 - L1MC4 LINE L1 -141 7901 7845 1914 139 24 0 chr1 198529049 198529344 -83664320 - AluSx SINE Alu -10 302 1 1760 94 5 0 chr1 198529593 198529817 -83663847 + AluSp SINE Alu 68 292 -21 24 0 0 0 chr1 198530341 198530365 -83663299 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr1 198530769 198530806 -83662858 + AT_rich Low_complexity Low_complexity 1 37 0 821 161 0 0 chr1 198530806 198530924 -83662740 - FLAM_C SINE Alu -25 118 1 990 267 12 20 chr1 198531445 198531696 -83661968 + MIR SINE MIR 9 257 -5 414 0 0 0 chr1 198533391 198533437 -83660227 + (TG)n Simple_repeat Simple_repeat 2 47 0 900 221 83 31 chr1 198533657 198533911 -83659753 - L2 LINE L2 -1 3312 3046 13266 41 8 0 chr1 198534789 198537189 -83656475 - L1PA5 LINE L1 -5 6149 3736 23 33 0 0 chr1 198537421 198537451 -83656213 + AT_rich Low_complexity Low_complexity 1 30 0 211 265 44 15 chr1 198537804 198537872 -83655792 - L2 LINE L2 -8 3264 3195 332 286 163 44 chr1 198538114 198538457 -83655207 - L2 LINE L2 -360 2954 2571 22 0 0 0 chr1 198539614 198539636 -83654028 + AT_rich Low_complexity Low_complexity 1 22 0 329 313 99 47 chr1 198540245 198540456 -83653208 - L2 LINE L2 -512 2802 2581 308 326 87 0 chr1 198541605 198541697 -83651967 - MIR SINE MIR -84 124 25 2378 79 3 0 chr1 198542566 198542907 -83650757 - L1PB1 LINE L1 -470 5681 5340 726 127 0 0 chr1 198542905 198543015 -83650649 + L1PB1 LINE L1 5682 5791 -360 * 349 189 9 9 chr1 198543015 198543121 -83650543 + (TA)n Simple_repeat Simple_repeat 1 106 0 2224 146 6 0 chr1 198543124 198543488 -83650176 + L1PB1 LINE L1 5783 6148 -3 725 267 142 42 chr1 198543848 198544342 -83649322 + MLT1L LTR MaLR 1 543 -72 397 239 71 0 chr1 198544349 198544462 -83649202 + MER5C DNA MER1_type 4 124 -200 248 146 0 18 chr1 198544528 198544583 -83649081 + MER5C DNA MER1_type 260 313 -11 246 254 17 28 chr1 198545065 198545149 -83648515 + MIR SINE MIR 85 168 -62 469 299 152 13 chr1 198545176 198545400 -83648264 - MIR SINE MIR 0 262 8 346 333 8 32 chr1 198545771 198545894 -83647770 + MIR3 SINE MIR 11 130 -78 1647 136 223 0 chr1 198545958 198546303 -83647361 - MSTA LTR MaLR -6 422 1 8524 174 51 2 chr1 198546303 198547878 -83645786 - MSTA-int LTR MaLR 0 1651 1 2202 121 132 5 chr1 198547878 198548258 -83645406 - MSTA LTR MaLR 0 428 1 360 313 54 0 chr1 198548936 198549048 -83644616 - MIR SINE MIR -75 133 16 612 288 45 0 chr1 198549890 198550067 -83643597 - MIR SINE MIR -12 250 66 729 318 97 17 chr1 198550072 198550484 -83643180 + MLT1L LTR MaLR 7 451 -164 2336 85 0 0 chr1 198550506 198550835 -83642829 - pTR5 LTR ERV1 -2044 394 66 313 202 32 21 chr1 198550835 198550929 -83642735 - LTR30 LTR ERV1 -80 642 548 1302 123 39 31 chr1 198550929 198551221 -83642443 - pTR5 LTR ERV1 -433 1522 6 5084 48 26 149 chr1 198551323 198552424 -83641240 - SVA Other Other -520 866 13 14524 156 21 14 chr1 198552557 198557317 -83636347 - L1MA1 LINE L1 -4 7717 2922 247 81 0 0 chr1 198557315 198557352 -83636312 + L1M1 LINE L1 2167 2203 -5362 * 1838 113 0 7 chr1 198557352 198557643 -83636021 + L1P LINE L1 3772 4060 -2086 8708 127 19 19 chr1 198557671 198559712 -83633952 - L1P4 LINE L1 -362 5812 3772 5466 212 32 34 chr1 198559699 198560122 -83633542 - L1MA1 LINE L1 -5351 2214 1791 * 297 0 0 0 chr1 198560122 198560155 -83633509 + (TC)n Simple_repeat Simple_repeat 2 34 0 5466 212 32 34 chr1 198560155 198561650 -83632014 - L1MA1 LINE L1 -5774 1791 20 2596 238 61 73 chr1 198561649 198562268 -83631396 - L1MEc LINE L1 -4374 1841 1216 * 1551 220 16 43 chr1 198562268 198562713 -83630951 + MER63B DNA MER1_type 4 436 0 2596 238 61 73 chr1 198562713 198563640 -83630024 - L1MEc LINE L1 -4999 1216 35 1042 192 61 35 chr1 198564660 198564954 -83628710 + MLT1D LTR MaLR 1 253 -252 864 260 49 52 chr1 198565028 198565462 -83628202 - MLT1C LTR MaLR 0 467 31 11441 78 2 28 chr1 198565474 198567892 -83625772 - L1PA7 LINE L1 -2 6152 3775 1265 136 29 10 chr1 198567892 198568098 -83625566 - AluSc SINE Alu -12 297 88 7792 94 21 20 chr1 198568098 198569041 -83624623 - L1PA7 LINE L1 -2366 3780 2834 1968 85 7 25 chr1 198569041 198569323 -83624341 - AluY SINE Alu -1 310 34 7792 94 21 20 chr1 198569323 198569657 -83624007 - L1PA7 LINE L1 -3312 2834 2502 233 342 13 0 chr1 198619662 198619741 -83573923 + L2 LINE L2 3223 3302 -11 362 296 132 7 chr1 198619816 198619968 -83573696 - MIR SINE MIR -84 178 8 374 95 0 0 chr1 198620202 198620265 -83573399 - MER21B LTR ERV1 -353 578 446 356 246 82 33 chr1 198620271 198620393 -83573271 - L2 LINE L2 -18 3295 3168 703 287 125 39 chr1 198620432 198620840 -83572824 + MLT1K LTR MaLR 15 457 -131 393 320 22 22 chr1 198620992 198621220 -83572444 + L1MC/D LINE L1 4620 4847 -1299 601 290 83 31 chr1 198621342 198622034 -83571630 + L1MC/D LINE L1 4980 5711 -748 26 0 0 0 chr1 198622411 198622437 -83571227 + AT_rich Low_complexity Low_complexity 1 26 0 3896 159 94 11 chr1 198622929 198623691 -83569973 - LTR1B LTR ERV1 0 826 1 444 231 58 0 chr1 198623893 198623997 -83569667 + L2 LINE L2 3204 3313 0 2878 204 84 45 chr1 198625206 198626001 -83567663 - LTR1B LTR ERV1 0 826 1 368 308 60 8 chr1 198627278 198627395 -83566269 - L2 LINE L2 -1 3312 3190 213 336 75 41 chr1 198627562 198627708 -83565956 - L2 LINE L2 0 3272 3122 335 308 8 22 chr1 198628207 198628325 -83565339 + MIR SINE MIR 17 129 -93 333 47 0 0 chr1 198628325 198628368 -83565296 + (TTTCC)n Simple_repeat Simple_repeat 2 44 0 1611 203 34 3 chr1 198628382 198628678 -83564986 - AluJo SINE Alu -7 305 1 276 265 29 49 chr1 198628678 198628780 -83564884 + MIR SINE MIR 100 199 -63 3266 142 10 4 chr1 198628841 198629350 -83564314 + MER41E LTR ERV1 1 512 0 288 250 0 66 chr1 198630342 198630376 -83563288 - L2 LINE L2 -9 3304 3269 831 247 18 0 chr1 198630376 198630546 -83563118 + MER45A DNA AcHobo 4 176 -2 288 250 0 66 chr1 198630546 198630587 -83563077 - L2 LINE L2 -44 3269 3234 875 283 71 39 chr1 198630768 198631391 -83562273 - L1ME4a LINE L1 -4 6117 5475 1822 75 37 4 chr1 198631622 198631890 -83561774 - L1PA13 LINE L1 0 6163 5887 322 351 55 36 chr1 198632173 198632338 -83561326 + L3 LINE CR1 1408 1575 -2 21 36 0 0 chr1 198632448 198632476 -83561188 + AT_rich Low_complexity Low_complexity 1 28 0 224 338 113 14 chr1 198632538 198632680 -83560984 - L2 LINE L2 -178 3094 2939 2008 152 39 0 chr1 198632957 198633292 -83560372 - MER7A DNA MER2_type 0 346 1 305 301 12 12 chr1 198633799 198633882 -83559782 - L2 LINE L2 -4 3268 3186 260 312 65 9 chr1 198634848 198635035 -83558629 - MIR SINE MIR 0 262 2 312 268 46 57 chr1 198637413 198637607 -83556057 - L1ME3A LINE L1 -15 6155 5964 5491 177 40 27 chr1 198637709 198639867 -83553797 - L1MC1 LINE L1 -1 6332 5299 416 283 150 65 chr1 198640122 198640429 -83553235 - MLT1I LTR MaLR -6 403 71 276 143 0 0 chr1 198641216 198641265 -83552399 + L2 LINE L2 3265 3313 0 289 282 32 57 chr1 198642703 198642827 -83550837 - MER5A DNA MER1_type -25 164 44 473 216 52 119 chr1 198643275 198643444 -83550220 + MER112 DNA MER1_type 5 151 -109 2394 93 0 10 chr1 198643444 198643755 -83549909 + AluSc SINE Alu 1 308 -1 473 216 52 119 chr1 198643755 198643853 -83549811 + MER112 DNA MER1_type 151 254 -6 819 260 31 18 chr1 198644287 198644510 -83549154 + MIR SINE MIR 3 228 -34 713 154 29 22 chr1 198645074 198645210 -83548454 - MIR SINE MIR -66 196 60 435 19 0 0 chr1 198647232 198647284 -83546380 + (CA)n Simple_repeat Simple_repeat 1 52 0 2073 139 0 22 chr1 198647672 198647989 -83545675 - AluSx SINE Alu 0 312 3 194 271 169 0 chr1 198648330 198648389 -83545275 + MIR SINE MIR 37 105 -103 1341 272 77 27 chr1 198648455 198648973 -83544691 - MLT1K LTR MaLR -17 571 28 500 256 111 10 chr1 198648991 198649198 -83544466 + L2 LINE L2 1880 2107 -1207 391 223 120 47 chr1 198649202 198649418 -83544246 - LTR50 LTR ERVL 0 795 575 2415 101 0 0 chr1 198649440 198649748 -83543916 - AluSg SINE Alu -2 308 1 815 249 111 0 chr1 198649894 198650111 -83543553 + L2 LINE L2 2406 2646 -668 3423 163 32 12 chr1 198650117 198650874 -83542790 - L1MCa LINE L1 -4821 1605 834 1155 186 82 0 chr1 198650880 198651111 -83542553 - L1MCa LINE L1 -6159 267 18 1079 269 99 27 chr1 198651140 198651700 -83541964 + L2 LINE L2 2674 3283 -30 1297 234 41 82 chr1 198651700 198652261 -83541403 - MER34 LTR ERV1 -4 538 1 1079 269 99 27 chr1 198652261 198652285 -83541379 + L2 LINE L2 3283 3304 -9 282 327 74 97 chr1 198652311 198652755 -83540909 - L2 LINE L2 -32 3240 2807 27 0 0 0 chr1 198654160 198654187 -83539477 + AT_rich Low_complexity Low_complexity 1 27 0 322 320 54 26 chr1 198654407 198654580 -83539084 + MIR SINE MIR 4 173 -43 469 278 26 0 chr1 198654888 198655003 -83538661 + MIR3 SINE MIR 52 169 -39 314 289 21 46 chr1 198655099 198655293 -83538371 + MER112 DNA MER1_type 70 258 -2 249 376 98 23 chr1 198655794 198655927 -83537737 + L2 LINE L2 3122 3264 -8 489 325 91 67 chr1 198657104 198657580 -83536084 - L2 LINE L2 -1 3271 2782 227 326 122 0 chr1 198657829 198657927 -83535737 - MIR SINE MIR -132 130 21 358 345 25 0 chr1 198658372 198658491 -83535173 - MIR SINE MIR -139 123 2 328 288 8 24 chr1 198658948 198659073 -83534591 + MER112 DNA MER1_type 132 254 -6 266 263 158 0 chr1 198659247 198659342 -83534322 - HAL1 LINE L1 -114 2393 2284 187 318 0 16 chr1 198661029 198661092 -83532572 + L2 LINE L2 3211 3272 0 553 236 154 43 chr1 198661139 198661258 -83532406 - MIR SINE MIR -24 238 134 2052 108 14 0 chr1 198661258 198661545 -83532119 + AluSp SINE Alu 21 311 -2 553 236 154 43 chr1 198661545 198661633 -83532031 - MIR SINE MIR -128 134 8 664 193 0 0 chr1 198661803 198661912 -83531752 - FRAM SINE Alu -68 108 1 24 0 0 0 chr1 198662007 198662031 -83531633 + AT_rich Low_complexity Low_complexity 1 24 0 1091 36 7 0 chr1 198662074 198662211 -83531453 - L1PA4 LINE L1 -3 6152 6015 21 57 0 0 chr1 198662280 198662315 -83531349 + AT_rich Low_complexity Low_complexity 1 35 0 180 339 0 15 chr1 198662832 198662897 -83530767 - MIR SINE MIR -106 102 39 296 367 14 22 chr1 198663257 198663396 -83530268 - L3 LINE CR1 -59 1518 1381 687 278 56 23 chr1 198663466 198663732 -83529932 + Charlie8 DNA MER1_type 1 275 -2142 231 290 246 43 chr1 198663860 198664067 -83529597 - L3 LINE CR1 -257 1320 1072 2134 133 0 3 chr1 198664447 198664756 -83528908 + AluSx SINE Alu 1 308 -4 217 269 30 0 chr1 198664913 198664985 -83528679 + CT-rich Low_complexity Low_complexity 1 74 0 310 169 22 0 chr1 198666442 198666531 -83527133 + (TA)n Simple_repeat Simple_repeat 1 91 0 221 182 26 26 chr1 198667023 198667100 -83526564 + (TATAA)n Simple_repeat Simple_repeat 5 81 0 1543 197 32 119 chr1 198668938 198669491 -83524173 - MLT1D LTR MaLR 0 505 1 277 208 112 24 chr1 198670354 198670479 -83523185 - L1MC4a LINE L1 -1845 5963 5828 808 326 67 6 chr1 198670669 198671000 -83522664 + MLT1I LTR MaLR 59 409 0 692 292 22 11 chr1 198671297 198671571 -83522093 + L1ME1 LINE L1 40 316 -6080 233 137 0 151 chr1 198671599 198671672 -83521992 + L1 LINE L1 4619 4680 -1466 298 316 83 35 chr1 198671733 198671961 -83521703 + L1ME1 LINE L1 324 562 -5834 3671 202 1 7 chr1 198671981 198672794 -83520870 - L1PA16 LINE L1 -1149 4997 4190 5303 119 49 5 chr1 198672795 198673903 -83519761 + L1PA16 LINE L1 5014 6165 -1 1552 271 41 26 chr1 198673958 198674601 -83519063 + L1ME1 LINE L1 551 1206 -5190 1785 149 188 25 chr1 198674601 198674969 -83518695 + MSTA LTR MaLR 1 428 0 1552 271 41 26 chr1 198674969 198675009 -83518655 + L1ME1 LINE L1 1206 1244 -5152 734 174 156 12 chr1 198675080 198675247 -83518417 - MSTA LTR MaLR -237 191 1 1405 163 50 53 chr1 198675295 198675615 -83518049 - THE1C LTR MaLR 0 375 57 1844 148 0 94 chr1 198675701 198676032 -83517632 + AluJb SINE Alu 2 301 -1 1698 257 71 61 chr1 198676055 198676784 -83516880 + L1ME1 LINE L1 1296 2016 -4199 390 42 0 0 chr1 198676784 198676832 -83516832 + (CA)n Simple_repeat Simple_repeat 2 49 0 1698 257 71 61 chr1 198676832 198677482 -83516182 + L1ME1 LINE L1 2016 4188 -2027 1953 205 30 8 chr1 198677498 198677868 -83515796 + MLT2B1 LTR ERVL 1 378 -142 1170 224 58 35 chr1 198677886 198678327 -83515337 + L1ME1 LINE L1 5208 5659 -572 1381 223 19 77 chr1 198678336 198678754 -83514910 + L1ME1 LINE L1 5838 6231 -4 23 33 0 0 chr1 198678757 198678787 -83514877 + AT_rich Low_complexity Low_complexity 1 30 0 834 191 175 11 chr1 198678997 198679138 -83514526 + MLT2B1 LTR ERVL 301 482 -38 357 24 0 0 chr1 198679138 198679180 -83514484 + (CAT)n Simple_repeat Simple_repeat 2 43 0 834 191 175 11 chr1 198679180 198679227 -83514437 + MLT2B1 LTR ERVL 482 520 0 201 171 0 0 chr1 198679316 198679351 -83514313 + T-rich Low_complexity Low_complexity 1 35 0 520 244 0 149 chr1 198679499 198679700 -83513964 + MIR3 SINE MIR 13 183 -25 2672 143 26 28 chr1 198680033 198680460 -83513204 - MSTB LTR MaLR 0 426 1 336 332 122 15 chr1 198680969 198681174 -83512490 + MIR SINE MIR 28 254 -8 234 343 38 9 chr1 198681267 198681372 -83512292 - L2 LINE L2 -222 3050 2943 339 241 139 9 chr1 198681902 198682010 -83511654 - MIR SINE MIR -70 192 71 217 293 12 73 chr1 198682218 198682300 -83511364 - L3 LINE CR1 -257 1320 1244 1141 189 82 112 chr1 198682418 198682794 -83510870 + MLT1A1 LTR MaLR 1 365 0 228 261 33 11 chr1 198683963 198684055 -83509609 - MIR3 SINE MIR -1 207 114 207 186 0 0 chr1 198684078 198684121 -83509543 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 866 197 0 0 chr1 198686813 198686945 -83506719 + FLAM_A SINE Alu 1 132 -1 216 0 0 0 chr1 198687051 198687075 -83506589 + (TG)n Simple_repeat Simple_repeat 2 25 0 255 79 0 0 chr1 198687076 198687114 -83506550 + (GA)n Simple_repeat Simple_repeat 2 39 0 731 244 109 35 chr1 198687122 198687590 -83506074 + MLT1G1 LTR MaLR 1 589 -1 2299 55 0 61 chr1 198690721 198691032 -83502632 + AluY SINE Alu 1 292 -19 278 213 27 53 chr1 198691507 198691582 -83502082 - MER5B DNA MER1_type -16 162 90 1406 236 113 36 chr1 198692225 198692641 -83501023 + MLT1J2 LTR MaLR 1 448 -2 192 308 143 11 chr1 198692786 198692877 -83500787 + MIR SINE MIR 49 151 -111 21 57 0 0 chr1 198692923 198692958 -83500706 + AT_rich Low_complexity Low_complexity 1 35 0 816 122 0 41 chr1 198692962 198693085 -83500579 - FLAM_C SINE Alu -19 124 7 417 281 31 0 chr1 198693244 198693372 -83500292 - MIR SINE MIR -29 233 102 487 242 8 8 chr1 198693437 198693557 -83500107 + L2 LINE L2 3192 3311 -2 515 284 0 0 chr1 198693926 198694035 -83499629 - MER81 DNA DNA -5 109 1 238 308 51 13 chr1 198694430 198694508 -83499156 - MIR SINE MIR -162 100 20 255 297 55 70 chr1 198694963 198695091 -83498573 + L2 LINE L2 3179 3304 -9 238 286 24 24 chr1 198696664 198696748 -83496916 + MIR3 SINE MIR 71 154 -54 492 228 241 0 chr1 198699653 198699798 -83493866 - MER5A DNA MER1_type 0 189 10 1334 146 97 45 chr1 198699815 198700123 -83493541 + MER33 DNA MER1_type 1 324 0 1007 261 39 26 chr1 198701141 198701447 -83492217 + MLT1J LTR MaLR 200 509 -2 656 270 47 17 chr1 198701618 198701851 -83491813 + MIR SINE MIR 2 241 -21 639 223 74 104 chr1 198702409 198702678 -83490986 - MLT1H LTR MaLR -64 485 225 461 296 148 10 chr1 198702855 198703051 -83490613 - MIR SINE MIR -37 225 3 405 58 0 0 chr1 198703699 198703751 -83489913 + (TG)n Simple_repeat Simple_repeat 2 53 0 246 62 0 0 chr1 198703963 198703995 -83489669 + (TC)n Simple_repeat Simple_repeat 1 32 0 576 335 30 4 chr1 198704242 198704475 -83489189 - MIR SINE MIR -11 251 13 297 318 31 23 chr1 198705413 198705542 -83488122 - L2 LINE L2 -9 3263 3134 220 317 75 87 chr1 198706251 198706598 -83487066 + L2 LINE L2 2924 3266 -6 1589 236 33 92 chr1 198707356 198707902 -83485762 + MER20B DNA MER1_type 3 516 -267 375 198 59 10 chr1 198708017 198708118 -83485546 + MER20B DNA MER1_type 515 620 -163 294 269 164 23 chr1 198709885 198710056 -83483608 + MLT1J2 LTR MaLR 246 440 -10 2455 228 47 78 chr1 198710522 198711337 -83482327 - MER21B LTR ERV1 -57 806 18 1489 187 93 10 chr1 198711345 198711395 -83482269 - MER2 DNA MER2_type -7 338 294 414 0 0 0 chr1 198711395 198711441 -83482223 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 1489 187 93 10 chr1 198711441 198711700 -83481964 - MER2 DNA MER2_type -51 294 3 193 349 53 0 chr1 198713033 198713165 -83480499 - MIR SINE MIR -2 260 122 632 299 53 48 chr1 198713393 198713593 -83480071 + MLT1I LTR MaLR 47 221 -188 1193 166 22 45 chr1 198713593 198713816 -83479848 - MER20B DNA MER1_type 0 219 2 632 299 53 48 chr1 198713816 198714007 -83479657 + MLT1I LTR MaLR 221 409 0 467 245 84 19 chr1 198714632 198714787 -83478877 + MIR SINE MIR 98 262 0 450 228 11 0 chr1 198714890 198714982 -83478682 + MIR SINE MIR 129 221 -41 534 230 104 0 chr1 198715401 198715536 -83478128 - MIR3 SINE MIR -1 207 59 1312 231 43 3 chr1 198715832 198716131 -83477533 - L1ME1 LINE L1 -5 6161 5851 357 294 63 28 chr1 198716133 198716276 -83477388 + MIR SINE MIR 59 206 -56 212 298 250 0 chr1 198716980 198717104 -83476560 + MIR3 SINE MIR 17 171 -37 246 143 0 0 chr1 198717466 198717515 -83476149 + (TC)n Simple_repeat Simple_repeat 2 50 0 255 257 7 66 chr1 198718128 198718280 -83475384 + CT-rich Low_complexity Low_complexity 4 146 0 181 175 0 35 chr1 198718287 198718344 -83475320 + C-rich Low_complexity Low_complexity 6 60 0 214 254 22 15 chr1 198718364 198718498 -83475166 + CT-rich Low_complexity Low_complexity 1 135 0 237 65 0 0 chr1 198719845 198719876 -83473788 + (TC)n Simple_repeat Simple_repeat 1 31 0 183 80 0 0 chr1 198719945 198719970 -83473694 + (GA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chr1 198720952 198720981 -83472683 + (TG)n Simple_repeat Simple_repeat 1 29 0 231 36 0 0 chr1 198720980 198721008 -83472656 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 255 61 0 0 chr1 198721237 198721270 -83472394 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 250 210 65 0 chr1 198726903 198726965 -83466699 - L2 LINE L2 -1 3312 3247 310 366 0 8 chr1 198727055 198727178 -83466486 + MIR SINE MIR 28 149 -113 201 344 16 0 chr1 198727253 198727317 -83466347 + MIR SINE MIR 163 227 -35 219 286 50 99 chr1 198727336 198727497 -83466167 + MIR3 SINE MIR 1 153 -55 21 0 0 0 chr1 198727568 198727589 -83466075 + AT_rich Low_complexity Low_complexity 1 21 0 2642 99 3 0 chr1 198727745 198728108 -83465556 - THE1B LTR MaLR 0 364 1 201 39 0 0 chr1 198728188 198728214 -83465450 + (TTG)n Simple_repeat Simple_repeat 1 26 0 198 321 136 38 chr1 198728941 198729125 -83464539 + L2 LINE L2 3070 3271 -1 976 213 13 31 chr1 198729395 198729620 -83464044 + MER58A DNA MER1_type 1 221 -3 473 259 100 25 chr1 198729871 198730110 -83463554 + LTR16B LTR ERVL 208 464 0 424 232 50 0 chr1 198730127 198730226 -83463438 - MER5A DNA MER1_type -77 112 9 1017 241 0 5 chr1 198730270 198730490 -83463174 - MER58A DNA MER1_type 0 224 6 1999 185 93 62 chr1 198730714 198731356 -83462308 - L1MB7 LINE L1 0 6184 5523 1913 153 0 3 chr1 198731392 198731687 -83461977 + AluJb SINE Alu 1 294 -18 349 296 78 72 chr1 198733836 198734143 -83459521 - L2 LINE L2 -1320 1994 1686 561 261 184 19 chr1 198734306 198734513 -83459151 - MIR SINE MIR -21 241 1 278 345 94 41 chr1 198734822 198734993 -83458671 + L2 LINE L2 2664 2843 -471 201 317 0 0 chr1 198735009 198735151 -83458513 + (CA)n Simple_repeat Simple_repeat 2 143 0 214 245 0 57 chr1 198735385 198735438 -83458226 + L2 LINE L2 3024 3073 -199 306 253 84 21 chr1 198735518 198735613 -83458051 - L2 LINE L2 -2 3270 3170 212 329 68 0 chr1 198735635 198735708 -83457956 + L2 LINE L2 3144 3221 -51 570 288 184 0 chr1 198737283 198737495 -83456169 + MIR SINE MIR 12 262 0 340 301 77 21 chr1 198738008 198738151 -83455513 - MIR3 SINE MIR -55 153 3 207 69 0 0 chr1 198739554 198739583 -83454081 + (TC)n Simple_repeat Simple_repeat 2 30 0 428 313 66 16 chr1 198740207 198740389 -83453275 - MIR SINE MIR 0 262 72 1830 161 56 3 chr1 198740712 198741036 -83452628 + MER7A DNA MER2_type 6 344 -2 29 28 0 0 chr1 198741314 198741350 -83452314 + AT_rich Low_complexity Low_complexity 1 36 0 270 226 22 124 chr1 198741350 198741487 -83452177 + L2 LINE L2 2698 2820 -494 394 270 45 0 chr1 198741546 198741635 -83452029 - L2 LINE L2 0 3313 3221 289 223 259 0 chr1 198741648 198741760 -83451904 - MIR SINE MIR 0 262 122 237 291 0 12 chr1 198741909 198741995 -83451669 - L1ME LINE L1 -260 5861 5777 478 291 108 24 chr1 198741998 198742293 -83451371 - L1ME LINE L1 -394 5727 5408 276 53 0 0 chr1 198742454 198742492 -83451172 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 343 10 0 chr1 198742636 198742738 -83450926 + MER5A DNA MER1_type 4 106 -83 321 349 115 5 chr1 198745664 198745856 -83447808 + MIR SINE MIR 7 219 -43 11302 210 56 38 chr1 198745882 198747891 -83445773 - L1MA5A LINE L1 -5 6994 5023 2600 54 0 13 chr1 198747891 198748206 -83445458 - AluY SINE Alu 0 311 1 11302 210 56 38 chr1 198748206 198749587 -83444077 - L1MA5A LINE L1 -1976 5023 3669 671 196 0 58 chr1 198749587 198749725 -83443939 - FLAM_C SINE Alu -2 131 2 11302 210 56 38 chr1 198749725 198749752 -83443912 - L1MA5A LINE L1 -3330 3669 3644 1565 206 47 0 chr1 198749752 198750028 -83443636 + AluJo SINE Alu 1 289 -23 11302 210 56 38 chr1 198750028 198750704 -83442960 - L1MA5A LINE L1 -3355 3644 2982 2082 131 0 19 chr1 198750704 198751017 -83442647 - AluSg1 SINE Alu -2 307 1 11302 210 56 38 chr1 198751017 198752158 -83441506 - L1MA5A LINE L1 -4017 2982 1578 252 123 68 27 chr1 198752191 198752264 -83441400 + Zaphod DNA AcHobo 895 970 -3061 7831 101 6 11 chr1 198752324 198753785 -83439879 - L1PA8A LINE L1 -28 6103 4653 750 55 0 36 chr1 198753785 198753891 -83439773 + L1PA6 LINE L1 6049 6154 0 7831 101 6 11 chr1 198753891 198754459 -83439205 - L1PA8A LINE L1 -1478 4653 4084 1817 244 26 34 chr1 198754459 198754926 -83438738 - L1MA5A LINE L1 -5234 1615 1153 998 209 0 34 chr1 198756241 198756447 -83437217 - MER63A DNA MER1_type -11 199 1 471 251 51 131 chr1 198756504 198756779 -83436885 - MIR SINE MIR -1 261 9 279 287 70 40 chr1 198756821 198756971 -83436693 + MIR SINE MIR 30 191 -62 408 40 0 0 chr1 198757055 198757105 -83436559 + (CA)n Simple_repeat Simple_repeat 1 50 0 219 390 59 0 chr1 198757504 198757622 -83436042 + L2 LINE L2 3133 3257 -15 183 320 0 0 chr1 198758017 198758067 -83435597 + MER5B DNA MER1_type 119 168 -10 208 184 66 79 chr1 198760074 198760150 -83433514 + L3 LINE CR1 1266 1340 -237 321 339 63 54 chr1 198761682 198761921 -83431743 - L2 LINE L2 0 3272 3032 870 304 105 20 chr1 198762113 198762727 -83430937 + L2 LINE L2 2644 3313 0 303 328 155 29 chr1 198762862 198763036 -83430628 - MER91A DNA MER1_type 0 196 1 209 308 60 93 chr1 198763112 198763294 -83430370 + MIR SINE MIR 21 196 -66 1721 55 5 0 chr1 198763457 198763674 -83429990 + L1PA7 LINE L1 5936 6153 -1 609 263 93 118 chr1 198764099 198764651 -83429013 - HAL1 LINE L1 -11 2496 1932 314 39 115 0 chr1 198764651 198764703 -83428961 + MER52C LTR ERV1 1108 1165 -113 609 263 93 118 chr1 198764703 198765594 -83428070 - HAL1 LINE L1 -575 1932 1039 22 0 0 0 chr1 198765706 198765728 -83427936 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 198765980 198766008 -83427656 + AT_rich Low_complexity Low_complexity 1 28 0 2823 3 0 0 chr1 198766374 198766678 -83426986 + AluY SINE Alu 1 304 -7 1651 209 79 8 chr1 198766973 198767341 -83426323 + MSTD LTR MaLR 1 394 -2 1432 296 67 14 chr1 198769591 198770418 -83423246 + L2 LINE L2 2510 3313 0 1151 212 32 0 chr1 198770433 198770650 -83423014 + MER58A DNA MER1_type 1 224 0 225 160 40 0 chr1 198772031 198772081 -83421583 + (TA)n Simple_repeat Simple_repeat 1 52 0 237 329 0 0 chr1 198772092 198772171 -83421493 - MIR SINE MIR -50 212 134 2192 124 0 0 chr1 198772452 198772742 -83420922 - AluSg SINE Alu -20 290 1 30 27 0 0 chr1 198773014 198773051 -83420613 + AT_rich Low_complexity Low_complexity 1 37 0 3150 143 25 4 chr1 198773051 198773605 -83420059 - L1MA4A LINE L1 -2 6301 5736 1024 195 102 4 chr1 198773925 198774171 -83419493 + L1MD2 LINE L1 6087 6356 -3 536 336 72 38 chr1 198774206 198774911 -83418753 - L1MEd LINE L1 -5353 766 38 185 406 8 15 chr1 198774965 198775098 -83418566 - L2 LINE L2 -597 2717 2586 938 264 75 51 chr1 198775222 198775636 -83418028 - L2 LINE L2 0 3313 2839 214 232 0 36 chr1 198775765 198775821 -83417843 + MIR SINE MIR 159 212 -50 599 323 59 48 chr1 198776340 198776696 -83416968 + L3 LINE CR1 803 1162 -415 293 338 225 20 chr1 198776815 198776966 -83416698 - L2 LINE L2 0 3272 3091 194 152 0 22 chr1 198777820 198777866 -83415798 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1957 163 0 0 chr1 198778091 198778397 -83415267 + AluSx SINE Alu 1 306 -6 213 257 68 54 chr1 198779296 198779370 -83414294 - MIR3 SINE MIR -7 201 127 360 71 18 0 chr1 198780588 198780644 -83413020 - L1PB2 LINE L1 -3 6148 6092 2181 67 0 57 chr1 198781287 198781606 -83412058 - AluY SINE Alu 0 302 1 219 167 24 0 chr1 198783304 198783346 -83410318 + (TGG)n Simple_repeat Simple_repeat 2 44 0 2909 106 95 22 chr1 198783354 198783818 -83409846 - L1PB1 LINE L1 -53 6098 5601 381 230 115 26 chr1 198784965 198785078 -83408586 + MER94 DNA DNA 1 123 -11 679 280 0 0 chr1 198785348 198785505 -83408159 + MER117 DNA MER1_type 1 157 -40 21 0 0 0 chr1 198785632 198785653 -83408011 + AT_rich Low_complexity Low_complexity 1 21 0 264 326 95 27 chr1 198785913 198785938 -83407726 + MIR3 SINE MIR 21 43 -165 1684 179 47 50 chr1 198785938 198786302 -83407362 - MLT1A1 LTR MaLR 0 365 3 264 326 95 27 chr1 198786302 198786423 -83407241 + MIR3 SINE MIR 43 177 -31 773 261 77 0 chr1 198786475 198786670 -83406994 - MER58A DNA MER1_type -13 211 2 531 164 96 0 chr1 198786694 198786798 -83406866 - MLT1F LTR MaLR -5 537 424 25 0 0 0 chr1 198787852 198787877 -83405787 + AT_rich Low_complexity Low_complexity 1 25 0 264 146 0 0 chr1 198788766 198788807 -83404857 - MLT1A1 LTR MaLR 0 365 325 365 229 98 69 chr1 198789127 198789372 -83404292 - Charlie2 DNA MER1_type 0 2862 2611 241 347 118 42 chr1 198790084 198790372 -83403292 + L2 LINE L2 2037 2346 -968 1061 259 68 17 chr1 198791270 198791424 -83402240 - Charlie2 DNA MER1_type -292 2570 2425 838 160 13 0 chr1 198791424 198791580 -83402084 - L1MD1 LINE L1 -3 6239 6082 1061 259 68 17 chr1 198791580 198791907 -83401757 - Charlie2 DNA MER1_type -437 2425 2064 255 192 0 7 chr1 198792485 198792570 -83401094 + MIR SINE MIR 113 251 -11 266 298 118 19 chr1 198793106 198793267 -83400397 - L2 LINE L2 -1376 1938 1762 1473 182 83 3 chr1 198793501 198793825 -83399839 - MLT1A1 LTR MaLR -15 350 1 591 15 0 0 chr1 198794249 198794317 -83399347 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1196 51 17 17 chr1 198794323 198794501 -83399163 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 271 96 39 0 chr1 198794501 198794553 -83399111 + CT-rich Low_complexity Low_complexity 2 55 0 1189 186 0 0 chr1 198794553 198794746 -83398918 - AluJb SINE Alu -33 279 87 284 310 0 0 chr1 198796082 198796153 -83397511 + L2 LINE L2 3186 3256 -16 1691 167 0 30 chr1 198796438 198796743 -83396921 + AluJo SINE Alu 9 304 -8 252 306 12 24 chr1 198796809 198796894 -83396770 - L1ME3A LINE L1 -99 6071 5988 320 188 10 52 chr1 198796987 198797083 -83396581 - L1ME3A LINE L1 -225 5945 5854 675 203 31 0 chr1 198797584 198797712 -83395952 - FLAM_C SINE Alu 0 133 2 200 260 67 48 chr1 198798055 198798159 -83395505 - MIR3 SINE MIR -15 193 88 1575 286 40 22 chr1 198798403 198798948 -83394716 - L2 LINE L2 -1724 1590 1036 280 119 0 0 chr1 198799025 198799067 -83394597 + L2 LINE L2 3268 3309 -4 1111 136 0 0 chr1 198800181 198800343 -83393321 + AluSq SINE Alu 140 301 -12 563 304 198 46 chr1 198800761 198801430 -83392234 - L2 LINE L2 -565 2749 2183 1675 207 25 10 chr1 198801430 198801826 -83391838 + L1MB8 LINE L1 5767 6168 -10 563 304 198 46 chr1 198801826 198802473 -83391191 - L2 LINE L2 -1131 2183 1233 306 0 0 0 chr1 198802495 198802529 -83391135 + (TG)n Simple_repeat Simple_repeat 1 34 0 1103 51 0 0 chr1 198802683 198802820 -83390844 + AluY SINE Alu 171 307 -4 260 229 12 0 chr1 198803166 198803249 -83390415 + GA-rich Low_complexity Low_complexity 2 85 0 558 253 79 34 chr1 198803250 198803428 -83390236 - MIR SINE MIR -10 252 67 237 360 150 0 chr1 198803749 198803902 -83389762 - MIR SINE MIR -3 259 84 7260 40 8 0 chr1 198803906 198804860 -83388804 + L1PA5 LINE L1 5186 6146 -8 25 0 0 0 chr1 198804860 198804885 -83388779 + AT_rich Low_complexity Low_complexity 1 25 0 199 359 91 27 chr1 198804941 198805068 -83388596 - L2 LINE L2 -1005 2309 2160 1001 60 5 46 chr1 198805068 198805282 -83388382 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 199 359 91 27 chr1 198805282 198805373 -83388291 - L2 LINE L2 -1154 2160 2076 260 286 0 75 chr1 198805412 198805545 -83388119 + MER112 DNA MER1_type 1 123 -137 25 51 0 0 chr1 198805935 198805974 -83387690 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr1 198806084 198806107 -83387557 + AT_rich Low_complexity Low_complexity 1 23 0 225 258 97 54 chr1 198806500 198806593 -83387071 - MIR SINE MIR -110 152 56 22 0 0 0 chr1 198807036 198807058 -83386606 + AT_rich Low_complexity Low_complexity 1 22 0 321 344 31 12 chr1 198807491 198807654 -83386010 - L2 LINE L2 -527 2787 2622 209 290 20 70 chr1 198808232 198808332 -83385332 + L2 LINE L2 3210 3304 -9 453 103 0 0 chr1 198809160 198809228 -83384436 + (TG)n Simple_repeat Simple_repeat 2 69 0 725 70 0 0 chr1 198809948 198810048 -83383616 - AluSp/q SINE Alu 0 313 214 261 305 9 38 chr1 198810072 198810177 -83383487 - MIR SINE MIR -24 238 137 215 360 48 8 chr1 198810209 198810334 -83383330 - MIR SINE MIR -121 141 12 21 71 0 0 chr1 198810357 198810399 -83383265 + AT_rich Low_complexity Low_complexity 1 42 0 208 0 0 59 chr1 198810402 198810436 -83383228 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 7833 13 3 1 chr1 198810437 198811898 -83381766 - L1PA3 LINE L1 0 6155 4691 718 265 56 21 chr1 198813311 198813545 -83380119 - MIR SINE MIR -3 259 18 752 212 45 45 chr1 198813580 198813778 -83379886 - MER58C DNA MER1_type -17 198 1 308 310 56 35 chr1 198815010 198815152 -83378512 - L2 LINE L2 -214 3058 2914 5804 154 14 8 chr1 198815204 198816512 -83377152 - L1MA4 LINE L1 -7 6293 4978 * 14892 186 28 7 chr1 198816511 198818018 -83375646 - L1MA3 LINE L1 0 6487 5013 182 62 31 0 chr1 198818018 198818050 -83375614 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 14892 186 28 7 chr1 198818050 198820615 -83373049 - L1MA3 LINE L1 -1474 5013 2328 207 0 0 0 chr1 198820635 198820658 -83373006 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1995 52 0 0 chr1 198820663 198820911 -83372753 - L1PA5 LINE L1 -15 6139 5892 1400 235 40 49 chr1 198820911 198821528 -83372136 - L1MA3 LINE L1 -3962 2366 1755 7250 166 30 37 chr1 198821655 198823418 -83370246 - L1MA3 LINE L1 -4065 1263 16 5795 195 14 28 chr1 198824387 198825709 -83367955 - L1PB4 LINE L1 -945 5201 3898 1050 160 40 18 chr1 198825712 198825984 -83367680 + L1PB4 LINE L1 5196 5476 -680 1212 211 12 0 chr1 198825984 198826228 -83367436 + L1PB4 LINE L1 5898 6156 0 1050 160 40 18 chr1 198826228 198826241 -83367423 + L1PB4 LINE L1 5476 5487 -669 389 331 167 24 chr1 198827488 198828379 -83365285 - L2 LINE L2 0 3272 2187 22 0 0 0 chr1 198828943 198828965 -83364699 + AT_rich Low_complexity Low_complexity 1 22 0 190 242 15 30 chr1 198829079 198829145 -83364519 - L2 LINE L2 -243 3070 3006 1973 149 116 12 chr1 198829703 198830126 -83363538 - MLT1C LTR MaLR 0 467 1 613 356 119 16 chr1 198830296 198830667 -83362997 - L3 LINE CR1 -65 1512 1104 207 88 0 0 chr1 198830863 198830897 -83362767 + (TG)n Simple_repeat Simple_repeat 1 34 0 632 344 132 24 chr1 198831405 198831937 -83361727 - L3 LINE CR1 -872 705 117 307 320 35 6 chr1 198832170 198832342 -83361322 - LTR67 LTR ERVL 0 557 381 413 323 53 0 chr1 198832917 198833050 -83360614 + L2 LINE L2 3102 3241 -31 478 354 80 4 chr1 198833074 198833300 -83360364 + MIR SINE MIR 20 262 0 23 33 0 0 chr1 198834558 198834588 -83359076 + AT_rich Low_complexity Low_complexity 1 30 0 460 307 7 13 chr1 198834592 198834742 -83358922 - MIR SINE MIR -101 161 13 1936 241 24 18 chr1 198835094 198835593 -83358071 - MLT1D LTR MaLR 0 505 4 826 346 34 34 chr1 198836828 198837441 -83356223 - L2 LINE L2 -967 2347 1735 432 0 0 0 chr1 198837513 198837561 -83356103 + (TG)n Simple_repeat Simple_repeat 1 48 0 249 33 0 0 chr1 198837560 198837590 -83356074 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 2310 98 3 3 chr1 198837915 198838222 -83355442 + AluSp SINE Alu 1 307 -6 321 172 0 0 chr1 198840226 198840290 -83353374 + T-rich Low_complexity Low_complexity 5 68 0 3829 25 0 0 chr1 198842580 198843023 -83350641 + L1PA3 LINE L1 5710 6152 -3 24 0 0 0 chr1 198843023 198843047 -83350617 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 198843202 198843225 -83350439 + AT_rich Low_complexity Low_complexity 1 23 0 367 313 26 94 chr1 198844636 198844943 -83348721 + L1MEc LINE L1 524 809 -6016 4819 100 5 33 chr1 198845326 198846076 -83347588 - L1PB1 LINE L1 -7 6144 5416 255 245 29 0 chr1 198846087 198846189 -83347475 - L1PB1 LINE L1 -1017 5129 5025 345 287 8 33 chr1 198846464 198846586 -83347078 + L1MEc LINE L1 1356 1474 -5173 347 269 52 35 chr1 198846592 198846859 -83346805 + L1MEc LINE L1 1474 1663 -4879 3350 195 50 43 chr1 198846860 198847786 -83345878 + L1MD2 LINE L1 5219 6154 -205 207 0 0 0 chr1 198847786 198847809 -83345855 + (CA)n Simple_repeat Simple_repeat 2 24 0 3350 195 50 43 chr1 198847809 198847837 -83345827 + L1MD2 LINE L1 6154 6180 -179 225 274 0 0 chr1 198847862 198847913 -83345751 + L2 LINE L2 3217 3267 -5 21 0 0 0 chr1 198849167 198849188 -83344476 + AT_rich Low_complexity Low_complexity 1 21 0 489 155 318 0 chr1 198849188 198849336 -83344328 - L1MA3 LINE L1 -1 6304 6110 21 0 0 0 chr1 198849377 198849398 -83344266 + AT_rich Low_complexity Low_complexity 1 21 0 441 0 0 0 chr1 198849702 198849751 -83343913 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 340 293 34 20 chr1 198851886 198852033 -83341631 - MIR SINE MIR -8 254 106 21 0 0 0 chr1 198852439 198852460 -83341204 + AT_rich Low_complexity Low_complexity 1 21 0 1843 132 54 46 chr1 198852847 198853219 -83340445 - THE1C LTR MaLR 0 375 1 353 279 93 21 chr1 198853481 198853621 -83340043 - MIR3 SINE MIR -29 179 30 284 264 94 75 chr1 198854530 198854689 -83338975 + MER103 DNA DNA 2 163 -3 322 311 37 22 chr1 198856279 198856414 -83337250 - MIR3 SINE MIR -62 146 10 451 296 21 49 chr1 198856424 198856566 -83337098 - MER5B DNA MER1_type -34 144 7 180 0 0 0 chr1 198857605 198857625 -83336039 + (A)n Simple_repeat Simple_repeat 1 20 0 255 368 117 18 chr1 198859916 198860079 -83333585 - MIR SINE MIR -28 234 56 392 145 0 14 chr1 198861049 198861118 -83332546 + MIR SINE MIR 84 151 -111 211 307 141 73 chr1 198861457 198861868 -83331796 - L2 LINE L2 -4 3268 2830 417 39 0 0 chr1 198862651 198862702 -83330962 + (TG)n Simple_repeat Simple_repeat 2 52 0 541 357 17 17 chr1 198864317 198864617 -83329047 + L2 LINE L2 3014 3313 0 245 265 146 21 chr1 198864938 198865079 -83328585 - MIR SINE MIR -63 145 12 249 324 93 19 chr1 198866864 198866972 -83326692 - L2 LINE L2 -17 3255 3140 375 200 86 0 chr1 198867070 198867175 -83326489 - MLT1H LTR MaLR -4 545 432 487 251 75 75 chr1 198867227 198867506 -83326158 - MLT1H LTR MaLR -227 322 44 348 24 0 0 chr1 198867732 198867773 -83325891 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 274 111 52 chr1 198867792 198867927 -83325737 - MIR3 SINE MIR -63 145 3 195 271 203 0 chr1 198869057 198869116 -83324548 - L2 LINE L2 -11 3261 3191 288 0 0 0 chr1 198869440 198869472 -83324192 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 327 49 0 0 chr1 198869471 198869512 -83324152 + (GA)n Simple_repeat Simple_repeat 1 41 0 199 313 15 0 chr1 198869845 198869912 -83323752 + MIR SINE MIR 66 133 -75 419 208 0 0 chr1 198870055 198870127 -83323537 - MER81 DNA DNA -5 109 38 229 158 268 37 chr1 198870064 198870146 -83323518 + MER81 DNA DNA 14 114 0 * 209 316 99 35 chr1 198870258 198870429 -83323235 - L3b LINE CR1 -77 1506 1325 475 238 0 8 chr1 198871188 198871310 -83322354 + MER3 DNA MER1_type 46 166 -43 1536 155 120 0 chr1 198871324 198871666 -83321998 + MER3 DNA MER1_type 2238 2620 0 509 272 225 0 chr1 198873243 198873456 -83320208 - MIR SINE MIR 0 262 2 245 421 45 0 chr1 198874211 198874344 -83319320 - L3 LINE CR1 -67 1510 1372 * 386 321 15 22 chr1 198874342 198874476 -83319188 - MIR SINE MIR -60 148 16 * 672 240 201 29 chr1 198874464 198874777 -83318887 - L3 LINE CR1 -256 1321 955 261 0 0 0 chr1 198875225 198875254 -83318410 + (GA)n Simple_repeat Simple_repeat 2 30 0 237 333 76 18 chr1 198875970 198876141 -83317523 + MIR SINE MIR 46 226 -36 429 259 25 68 chr1 198876977 198877162 -83316502 + MIR SINE MIR 36 204 -58 515 255 82 96 chr1 198877525 198877941 -83315723 - MLT1J LTR MaLR -101 410 1 261 0 0 0 chr1 198878724 198878753 -83314911 + (TG)n Simple_repeat Simple_repeat 2 30 0 2496 248 56 31 chr1 198878876 198879734 -83313930 - L1ME3A LINE L1 -10 6160 5282 1153 179 0 10 chr1 198879850 198880046 -83313618 - AluJo SINE Alu -14 298 105 517 171 17 51 chr1 198880048 198880165 -83313499 + LOR1-int LTR ERV1 3840 3952 -4168 657 187 47 9 chr1 198880352 198880493 -83313171 + LOR1-int LTR ERV1 3954 6130 -628 * 1482 210 29 6 chr1 198880487 198880834 -83312830 + LOR1-int LTR ERV1 6376 7096 -6 467 264 7 21 chr1 198880839 198880979 -83312685 + MER4D LTR ERV1 2 139 -733 11827 159 12 58 chr1 198880992 198882922 -83310742 + MER66A-int LTR ERV1 4550 6566 -110 2343 104 0 16 chr1 198882922 198883240 -83310424 - AluSq SINE Alu 0 313 1 11827 159 12 58 chr1 198883240 198883294 -83310370 + MER66A-int LTR ERV1 6566 6426 -250 2618 61 0 0 chr1 198883294 198883605 -83310059 - AluY SINE Alu 0 311 1 11827 159 12 58 chr1 198883605 198883845 -83309819 + MER66A-int LTR ERV1 6425 6674 -2 1569 178 106 65 chr1 198883911 198884373 -83309291 + MER66A LTR ERV1 100 478 0 1947 270 104 43 chr1 198884385 198885790 -83307874 - L1MCa LINE L1 -2202 4224 2907 4742 204 31 21 chr1 198885790 198886859 -83306805 - Tigger6a DNA MER2_type -1 1082 3 1947 270 104 43 chr1 198886859 198887291 -83306373 - L1MCa LINE L1 -3519 2907 2301 2391 180 31 71 chr1 198887291 198887868 -83305796 - MLT2B3 LTR ERVL 0 554 1 1947 270 104 43 chr1 198887868 198887940 -83305724 - L1MCa LINE L1 -4125 2301 2235 715 296 85 17 chr1 198888037 198888637 -83305027 - L1MCa LINE L1 -4579 2028 1179 210 150 0 0 chr1 198889109 198889149 -83304515 + (T)n Simple_repeat Simple_repeat 1 40 0 1490 222 57 34 chr1 198889613 198890000 -83303664 - MSTD LTR MaLR 0 396 1 250 383 68 20 chr1 198890528 198890776 -83302888 - MIR SINE MIR -1 261 2 197 359 0 0 chr1 198890778 198890842 -83302822 - L2 LINE L2 -6 3266 3203 1379 217 50 22 chr1 198891689 198892012 -83301652 - MER58B DNA MER1_type 0 341 10 186 167 0 0 chr1 198892384 198892420 -83301244 + (CA)n Simple_repeat Simple_repeat 2 37 0 2463 50 3 3 chr1 198892475 198892774 -83300890 - AluY SINE Alu -12 299 1 207 349 106 0 chr1 198893025 198893157 -83300507 + L2 LINE L2 3127 3272 0 467 307 45 45 chr1 198893421 198893597 -83300067 - LTR16A LTR ERVL 0 450 275 2409 229 110 25 chr1 198893607 198894862 -83298802 + L1MEc LINE L1 1914 3233 -2982 428 324 133 2 chr1 198895117 198895522 -83298142 + L1M4 LINE L1 4388 4845 -1301 314 301 39 51 chr1 198895581 198895737 -83297927 - L1M4 LINE L1 -659 5519 5366 411 333 42 21 chr1 198895802 198896087 -83297577 - L1M4 LINE L1 -1109 5037 4747 1350 72 0 0 chr1 198896161 198896342 -83297322 + L1P LINE L1 2928 3108 -3038 399 335 32 32 chr1 198896566 198896787 -83296877 - L1M4 LINE L1 -2211 3935 3715 556 287 83 40 chr1 198896824 198897579 -83296085 - L1M4 LINE L1 -2502 3644 2857 1979 135 0 40 chr1 198898008 198898305 -83295359 - AluSx SINE Alu -26 286 2 226 143 41 0 chr1 198898338 198898387 -83295277 + L1MC4 LINE L1 6653 6703 -1339 201 254 0 0 chr1 198898390 198898445 -83295219 + (TA)n Simple_repeat Simple_repeat 1 55 0 277 87 0 43 chr1 198898445 198898491 -83295173 - L1MA9 LINE L1 -74 6238 6195 530 177 77 50 chr1 198898517 198898698 -83294966 - MER53 DNA DNA 0 189 4 24 0 0 0 chr1 198898703 198898727 -83294937 + AT_rich Low_complexity Low_complexity 1 24 0 393 287 0 59 chr1 198899010 198899146 -83294518 + MIR3 SINE MIR 40 167 -41 390 262 255 7 chr1 198899295 198899440 -83294224 + MER5A DNA MER1_type 9 189 0 1931 165 9 35 chr1 198899540 198899886 -83293778 + MER1B DNA MER1_type 1 337 0 398 267 123 11 chr1 198900428 198900615 -83293049 - LTR16A LTR ERVL -10 440 233 279 0 0 0 chr1 198901088 198901119 -83292545 + (CA)n Simple_repeat Simple_repeat 2 32 0 309 183 84 0 chr1 198901419 198901490 -83292174 + MER116 DNA Mariner 1 77 -3 213 278 0 0 chr1 198901761 198901815 -83291849 + MIR SINE MIR 89 142 -66 700 50 30 0 chr1 198902372 198902472 -83291192 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 236 206 29 0 chr1 198903165 198903301 -83290363 + (TA)n Simple_repeat Simple_repeat 2 141 0 25 0 0 0 chr1 198903328 198903353 -83290311 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr1 198903475 198903513 -83290151 + AT_rich Low_complexity Low_complexity 1 38 0 30 59 0 0 chr1 198903685 198903736 -83289928 + AT_rich Low_complexity Low_complexity 1 51 0 269 341 58 39 chr1 198903794 198903999 -83289665 - MIR SINE MIR -17 245 37 183 80 0 0 chr1 198905525 198905550 -83288114 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 1805 216 24 91 chr1 198907768 198908304 -83285360 - MLT1F1 LTR MaLR 0 567 68 234 316 0 0 chr1 198908337 198908394 -83285270 - MIR SINE MIR 0 262 206 286 340 128 37 chr1 198908569 198908951 -83284713 + L2 LINE L2 2850 3266 -6 238 262 10 0 chr1 198910925 198911028 -83282636 - L1M4 LINE L1 -3789 2357 2254 687 245 5 47 chr1 198911758 198911950 -83281714 + LTR41 LTR ERVL 1 184 -589 392 218 109 34 chr1 198912226 198912373 -83281291 - LTR41 LTR ERVL -10 763 606 254 278 46 99 chr1 198912519 198912670 -83280994 - LTR41 LTR ERVL -135 638 496 880 165 39 22 chr1 198912985 198913167 -83280497 - LTR41 LTR ERVL -586 187 3 1165 82 0 6 chr1 198913257 198913415 -83280249 - AluY SINE Alu -1 310 154 22 70 0 0 chr1 198913651 198913694 -83279970 + AT_rich Low_complexity Low_complexity 1 43 0 217 231 0 19 chr1 198913739 198913791 -83279873 + (TG)n Simple_repeat Simple_repeat 2 52 0 186 329 171 0 chr1 198913848 198913930 -83279734 - MIR SINE MIR -66 142 47 22 0 0 0 chr1 198914364 198914386 -83279278 + AT_rich Low_complexity Low_complexity 1 22 0 2095 232 91 17 chr1 198914498 198915023 -83278641 - MLT1E LTR MaLR 0 593 30 2004 143 26 12 chr1 198915479 198915822 -83277842 + MER7A DNA MER2_type 1 346 0 198 143 0 0 chr1 198915965 198916000 -83277664 + (TATG)n Simple_repeat Simple_repeat 4 38 0 4117 148 14 45 chr1 198916135 198916926 -83276738 - L1MC1 LINE L1 0 6333 5568 1346 162 24 48 chr1 198917053 198917188 -83276476 - Tigger2 DNA MER2_type -6 2712 2575 2161 114 3 0 chr1 198917188 198917487 -83276177 + AluSx SINE Alu 3 302 -10 198 0 0 0 chr1 198917490 198917512 -83276152 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1346 162 24 48 chr1 198917512 198917662 -83276002 - Tigger2 DNA MER2_type -145 2573 2430 2945 23 0 0 chr1 198917785 198918131 -83275533 - L1HS LINE L1 -1075 5071 4726 * 7098 48 0 41 chr1 198918126 198919274 -83274390 + L1HS LINE L1 5064 6155 0 234 0 0 0 chr1 198920474 198920500 -83273164 + (T)n Simple_repeat Simple_repeat 1 26 0 2157 160 13 80 chr1 198922627 198922896 -83270768 - Tigger2a DNA MER2_type -2275 433 206 2016 108 25 0 chr1 198922896 198923174 -83270490 - AluSq SINE Alu -28 285 1 2157 160 13 80 chr1 198923174 198923367 -83270297 - Tigger2a DNA MER2_type -2502 206 2 6999 51 10 0 chr1 198923641 198924783 -83268881 - L1PA6 LINE L1 -11 6143 4993 515 296 18 12 chr1 198925807 198925976 -83267688 - MIR3 SINE MIR -18 190 21 299 296 59 37 chr1 198927369 198927504 -83266160 + MER5A DNA MER1_type 34 171 -18 234 333 0 0 chr1 198927444 198927513 -83266151 - MER5B DNA MER1_type -101 77 9 * 2485 84 0 0 chr1 198927731 198928040 -83265624 - AluY SINE Alu -2 309 1 217 295 147 27 chr1 198928627 198928777 -83264887 + MIR SINE MIR 19 185 -67 275 282 182 0 chr1 198930216 198930326 -83263338 + L2 LINE L2 3140 3269 -3 2562 130 120 2 chr1 198930773 198931182 -83262482 - MSTB2 LTR MaLR 0 457 1 447 358 30 6 chr1 198931304 198931469 -83262195 - MIR SINE MIR -84 178 10 2464 70 0 0 chr1 198931513 198931815 -83261849 - AluY SINE Alu -9 302 1 243 332 65 60 chr1 198933319 198933551 -83260113 + MIR SINE MIR 3 235 -27 2253 80 0 30 chr1 198934265 198934565 -83259099 - AluSc SINE Alu -18 291 1 250 238 16 16 chr1 198935465 198935528 -83258136 + CT-rich Low_complexity Low_complexity 2 64 0 230 236 18 0 chr1 198935601 198935656 -83258008 + L2 LINE L2 3254 3309 -4 615 256 52 12 chr1 198935821 198935993 -83257671 - LTR33 LTR ERVL -2 519 341 316 296 82 19 chr1 198936061 198936267 -83257397 - LTR33 LTR ERVL -289 232 14 368 306 0 19 chr1 198937135 198937243 -83256421 - MER5A DNA MER1_type -3 186 81 908 196 94 41 chr1 198937308 198937553 -83256111 + MIR SINE MIR 5 262 0 404 262 62 28 chr1 198938416 198938561 -83255103 + MIR SINE MIR 46 195 -67 24 0 0 0 chr1 198938584 198938608 -83255056 + AT_rich Low_complexity Low_complexity 1 24 0 363 311 33 8 chr1 198938749 198938871 -83254793 + MIR SINE MIR 5 129 -133 187 353 0 0 chr1 198938981 198939032 -83254632 + L2 LINE L2 3207 3257 -15 207 0 0 0 chr1 198940424 198940447 -83253217 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 379 291 28 28 chr1 198940468 198940609 -83253055 + MIR SINE MIR 72 212 -50 636 345 110 53 chr1 198940968 198942174 -83251490 + L2 LINE L2 1978 3250 -22 1104 180 0 0 chr1 198942506 198942684 -83250980 + MER5B DNA MER1_type 1 178 0 194 180 16 0 chr1 198943743 198943804 -83249860 + (TATAA)n Simple_repeat Simple_repeat 2 63 0 586 261 43 0 chr1 198943810 198943948 -83249716 - MIR SINE MIR -104 158 15 269 280 40 13 chr1 198943962 198944037 -83249627 + MIR3 SINE MIR 92 168 -40 587 290 54 27 chr1 198944490 198944711 -83248953 + MIR SINE MIR 12 238 -24 318 106 0 0 chr1 198944738 198944785 -83248879 + (CAT)n Simple_repeat Simple_repeat 2 48 0 231 103 0 0 chr1 198944943 198944982 -83248682 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 198945099 198945120 -83248544 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr1 198946493 198946537 -83247127 + (CA)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr1 198946536 198946558 -83247106 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 493 362 43 4 chr1 198946613 198946848 -83246816 - MIR SINE MIR -15 247 4 188 311 40 0 chr1 198947543 198947617 -83246047 + L2 LINE L2 2926 3002 -270 257 314 0 12 chr1 198947702 198947788 -83245876 + L2 LINE L2 3229 3313 0 297 0 0 0 chr1 198948382 198948415 -83245249 + (T)n Simple_repeat Simple_repeat 1 33 0 481 274 170 0 chr1 198948711 198948864 -83244800 - MER5A DNA MER1_type 0 189 11 294 333 49 0 chr1 198949171 198949252 -83244412 + MIR SINE MIR 60 144 -64 559 339 115 43 chr1 198949258 198950152 -83243512 - L2 LINE L2 0 3313 2354 195 286 114 0 chr1 198950153 198950258 -83243406 + MIR SINE MIR 146 262 0 309 352 117 0 chr1 198950845 198950990 -83242674 - MER5A DNA MER1_type -1 188 27 1318 198 78 58 chr1 198951451 198951602 -83242062 - MLT1A1 LTR MaLR 0 365 219 2328 100 0 3 chr1 198951602 198951902 -83241762 - AluSg SINE Alu -11 299 1 1318 198 78 58 chr1 198951902 198952094 -83241570 - MLT1A1 LTR MaLR -146 219 15 845 210 15 82 chr1 198953294 198953561 -83240103 + L1ME3 LINE L1 5914 6162 0 187 325 120 8 chr1 198953727 198953844 -83239820 + MIR SINE MIR 47 176 -86 1838 126 19 0 chr1 198953848 198954109 -83239555 + L1PA15 LINE L1 5900 6165 0 1831 155 17 3 chr1 198954261 198954552 -83239112 - AluJb SINE Alu -17 295 1 34 55 0 0 chr1 198954644 198954699 -83238965 + AT_rich Low_complexity Low_complexity 1 55 0 2462 87 3 0 chr1 198954795 198955104 -83238560 + AluSp SINE Alu 1 310 -3 355 329 43 43 chr1 198955194 198955334 -83238330 - L2 LINE L2 -4 3268 3129 3685 56 11 9 chr1 198956130 198956579 -83237085 + L1PA4 LINE L1 5703 6152 -3 252 0 0 0 chr1 198958190 198958218 -83235446 + (T)n Simple_repeat Simple_repeat 1 28 0 2045 118 40 7 chr1 198958562 198958858 -83234806 - AluSx SINE Alu -6 306 1 929 20 0 0 chr1 198959636 198959737 -83233927 + L1PA2 LINE L1 6051 6151 -4 22 0 0 0 chr1 198959738 198959760 -83233904 + AT_rich Low_complexity Low_complexity 1 22 0 191 259 165 12 chr1 198959771 198959856 -83233808 - MIR3 SINE MIR -1 207 110 1281 81 6 0 chr1 198960875 198961035 -83232629 + AluY SINE Alu 46 206 -105 313 59 0 0 chr1 198961035 198961080 -83232584 + Alu SINE Alu 250 289 -11 344 309 79 0 chr1 198961292 198961418 -83232246 + MIR SINE MIR 99 234 -28 215 211 0 0 chr1 198961545 198961583 -83232081 + (TG)n Simple_repeat Simple_repeat 2 39 0 252 167 0 0 chr1 198963591 198963633 -83230031 + T-rich Low_complexity Low_complexity 5 46 0 832 172 10 26 chr1 198963633 198963932 -83229732 + CT-rich Low_complexity Low_complexity 1 294 0 1544 179 32 21 chr1 198964378 198964663 -83229001 + AluJo SINE Alu 1 288 -24 28 0 0 0 chr1 198964663 198964691 -83228973 + AT_rich Low_complexity Low_complexity 1 28 0 416 221 197 0 chr1 198965186 198965308 -83228356 + L1MC/D LINE L1 5624 5769 -2039 23 0 0 0 chr1 198965575 198965598 -83228066 + AT_rich Low_complexity Low_complexity 1 23 0 322 241 38 21 chr1 198967465 198967573 -83226091 + MER102b DNA MER1_type 7 133 -208 22 0 0 0 chr1 198967614 198967636 -83226028 + AT_rich Low_complexity Low_complexity 1 22 0 379 217 141 101 chr1 198967646 198967844 -83225820 + MER102b DNA MER1_type 135 340 -1 285 29 0 0 chr1 198968107 198968141 -83225523 + (CA)n Simple_repeat Simple_repeat 2 35 0 737 196 42 18 chr1 198969030 198969198 -83224466 + MER5A DNA MER1_type 18 189 0 186 43 0 0 chr1 198970457 198970480 -83223184 + (GGAAA)n Simple_repeat Simple_repeat 3 25 0 256 341 138 20 chr1 198970603 198970899 -83222765 + L2 LINE L2 2553 2883 -431 306 259 10 139 chr1 198970993 198971194 -83222470 + MIR SINE MIR 85 259 -3 1020 177 27 50 chr1 198971306 198971526 -83222138 + MER20 DNA MER1_type 1 215 -4 198 296 11 80 chr1 198971737 198971825 -83221839 + L2 LINE L2 3186 3267 -5 315 203 0 0 chr1 198972066 198972135 -83221529 + CT-rich Low_complexity Low_complexity 2 70 0 1689 175 3 32 chr1 198972717 198973031 -83220633 + AluJo SINE Alu 1 305 -7 225 206 79 16 chr1 198973278 198973341 -83220323 + L2 LINE L2 3184 3250 -63 366 303 42 0 chr1 198973599 198973718 -83219946 + MIR SINE MIR 62 185 -77 2259 123 0 0 chr1 198974502 198974812 -83218852 - AluSx SINE Alu -2 310 1 288 320 20 48 chr1 198975205 198975352 -83218312 - MER5A DNA MER1_type -45 144 2 23 33 0 0 chr1 198975564 198975594 -83218070 + AT_rich Low_complexity Low_complexity 1 30 0 522 337 72 30 chr1 198975783 198976213 -83217451 + L3b LINE CR1 1136 1583 0 450 0 0 0 chr1 198976968 198977018 -83216646 + (TG)n Simple_repeat Simple_repeat 2 51 0 1810 155 19 19 chr1 198977348 198977658 -83216006 - MER1B DNA MER1_type -1 338 29 843 179 26 0 chr1 198977679 198977830 -83215834 + MER5A DNA MER1_type 14 168 -21 22 35 0 0 chr1 198979713 198979742 -83213922 + AT_rich Low_complexity Low_complexity 1 29 0 10013 135 6 1 chr1 198979788 198982088 -83211576 - L1PA11 LINE L1 0 6174 3865 207 186 0 0 chr1 198982109 198982152 -83211512 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 25 31 0 0 chr1 198982307 198982339 -83211325 + AT_rich Low_complexity Low_complexity 1 32 0 402 234 58 65 chr1 198982339 198982493 -83211171 - HAL1 LINE L1 0 2507 2355 539 171 0 9 chr1 198982523 198982562 -83211102 + (TA)n Simple_repeat Simple_repeat 1 39 -71 4441 114 2 8 chr1 198982562 198983166 -83210498 - MER4A LTR ERV1 0 600 1 539 171 0 9 chr1 198983166 198983237 -83210427 + (TA)n Simple_repeat Simple_repeat 39 110 0 228 174 0 0 chr1 198983251 198983297 -83210367 + LTR66 LTR ERVL 394 439 -171 307 244 12 0 chr1 198983298 198983380 -83210284 - HAL1 LINE L1 -181 2326 2244 288 77 0 0 chr1 198983390 198983429 -83210235 + (CA)n Simple_repeat Simple_repeat 1 39 0 602 252 111 88 chr1 198983430 198983736 -83209928 - HAL1 LINE L1 -2185 322 10 315 330 153 50 chr1 198984331 198985174 -83208490 - L2 LINE L2 -452 2862 1933 1526 269 47 14 chr1 198985429 198985875 -83207789 + L2 LINE L2 2379 2839 -475 513 277 47 47 chr1 198985917 198986152 -83207512 + L2 LINE L2 3077 3311 -2 180 0 0 0 chr1 198986331 198986351 -83207313 + (TTG)n Simple_repeat Simple_repeat 2 21 0 210 37 0 0 chr1 198987147 198987174 -83206490 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 182 108 54 0 chr1 198987815 198987852 -83205812 + A-rich Low_complexity Low_complexity 1 39 0 244 358 19 12 chr1 198990344 198990506 -83203158 - L2 LINE L2 -428 2886 2724 269 298 84 23 chr1 198991686 198991817 -83201847 + MIR SINE MIR 49 187 -75 498 255 32 51 chr1 198993013 198993170 -83200494 - MIR SINE MIR -90 172 19 210 283 33 0 chr1 198995236 198995296 -83198368 + MIR SINE MIR 124 185 -77 26 30 0 0 chr1 198995497 198995530 -83198134 + AT_rich Low_complexity Low_complexity 1 33 0 225 206 0 16 chr1 198995560 198995623 -83198041 - L1MCa LINE L1 -4369 2057 1996 253 224 45 0 chr1 198995624 198995691 -83197973 + (CATATA)n Simple_repeat Simple_repeat 6 75 0 2184 105 0 14 chr1 198995738 198996060 -83197604 + AluSg SINE Alu 1 310 0 240 250 18 0 chr1 198996249 198996305 -83197359 + GA-rich Low_complexity Low_complexity 3 59 0 883 161 0 0 chr1 198997107 198997231 -83196433 + FLAM_A SINE Alu 4 127 -6 201 223 0 194 chr1 198997368 198997507 -83196157 - L2 LINE L2 -5 3308 3197 639 275 28 60 chr1 198999162 198999382 -83194282 - MIR SINE MIR -15 247 34 2165 98 21 0 chr1 198999382 198999669 -83193995 - AluSx SINE Alu -19 293 1 639 275 28 60 chr1 198999669 198999699 -83193965 - MIR SINE MIR -228 34 5 668 300 47 11 chr1 199000429 199000706 -83192958 - L1MCa LINE L1 -5808 608 322 310 222 10 40 chr1 199000783 199000882 -83192782 - L1MC4 LINE L1 -1333 6709 6614 2150 121 0 3 chr1 199001704 199002001 -83191663 + AluSq SINE Alu 1 296 -17 527 325 46 20 chr1 199002179 199002376 -83191288 + MIR3 SINE MIR 2 203 -5 550 104 4 73 chr1 199002376 199002530 -83191134 - L1M3 LINE L1 -478 5693 5489 2160 100 7 0 chr1 199002530 199002833 -83190831 - AluSp SINE Alu 0 306 2 550 104 4 73 chr1 199002833 199002865 -83190799 - L1M3 LINE L1 -682 5489 5456 208 139 0 0 chr1 199003819 199003855 -83189809 + (A)n Simple_repeat Simple_repeat 1 36 0 279 276 133 0 chr1 199003870 199003968 -83189696 + L2 LINE L2 3162 3272 0 189 0 0 0 chr1 199004495 199004516 -83189148 + (A)n Simple_repeat Simple_repeat 1 21 0 199 161 210 0 chr1 199006728 199006790 -83186874 + MIR SINE MIR 66 140 -122 246 204 19 0 chr1 199008052 199008106 -83185558 - MIR SINE MIR -25 237 183 223 257 96 66 chr1 199008856 199008992 -83184672 + MIR SINE MIR 20 159 -103 391 317 77 0 chr1 199009089 199009279 -83184385 - MIR SINE MIR -30 232 27 43 47 0 0 chr1 199009981 199010045 -83183619 + AT_rich Low_complexity Low_complexity 1 64 0 24 32 0 0 chr1 199011903 199011934 -83181730 + AT_rich Low_complexity Low_complexity 1 31 0 183 329 7 62 chr1 199012959 199013105 -83180559 - L2 LINE L2 -263 3009 2872 248 329 31 18 chr1 199013152 199013264 -83180400 - MIR SINE MIR -63 145 75 272 320 10 10 chr1 199013615 199013712 -83179952 - L2 LINE L2 -987 2327 2231 279 306 61 54 chr1 199013808 199013955 -83179709 - MIR3 SINE MIR -60 148 1 337 237 79 0 chr1 199015590 199015666 -83177998 + MIR SINE MIR 48 129 -133 1931 160 0 3 chr1 199015788 199016099 -83177565 + AluSx SINE Alu 5 314 0 822 212 48 26 chr1 199016508 199016697 -83176967 + MER3 DNA MER1_type 2 194 -15 472 229 119 5 chr1 199017041 199017163 -83176501 - MIR SINE MIR -75 133 3 254 325 25 25 chr1 199017263 199017383 -83176281 - L3 LINE CR1 -81 1496 1377 875 244 159 23 chr1 199017415 199017901 -83175763 - L2 LINE L2 -5 3308 2757 184 347 105 13 chr1 199017916 199018155 -83175509 + L2 LINE L2 2476 2736 -578 684 286 10 20 chr1 199018583 199018779 -83174885 - MER91A DNA MER1_type -2 194 1 312 291 45 37 chr1 199019266 199019400 -83174264 + MIR SINE MIR 79 213 -49 195 100 0 0 chr1 199019584 199019614 -83174050 + (TC)n Simple_repeat Simple_repeat 1 30 0 31 92 0 0 chr1 199020319 199020406 -83173258 + AT_rich Low_complexity Low_complexity 1 87 0 397 288 15 76 chr1 199022249 199022447 -83171217 + MIR SINE MIR 77 262 0 563 254 113 0 chr1 199022787 199022972 -83170692 + LTR50 LTR ERVL 6 211 -584 1735 114 40 87 chr1 199023071 199023395 -83170269 + AluSx SINE Alu 2 311 0 507 184 213 78 chr1 199023432 199023676 -83169988 + LTR50 LTR ERVL 519 795 0 554 347 0 0 chr1 199024028 199024218 -83169446 - MER117 DNA MER1_type -7 190 1 519 257 65 96 chr1 199024352 199024778 -83168886 - LTR33A LTR ERVL 0 523 1 364 275 160 10 chr1 199025882 199026082 -83167582 + MIR SINE MIR 8 237 -25 2049 125 13 10 chr1 199026519 199026823 -83166841 + AluSq SINE Alu 1 305 -8 1782 259 42 26 chr1 199026825 199027331 -83166333 - MLT1H1 LTR MaLR -41 514 1 789 261 41 25 chr1 199029585 199029830 -83163834 + MIR SINE MIR 4 252 -10 215 329 14 0 chr1 199031613 199031686 -83161978 + L2 LINE L2 3193 3266 -47 258 32 0 0 chr1 199031712 199031743 -83161921 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2162 125 79 18 chr1 199032726 199033069 -83160595 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr1 199033666 199033688 -83159976 + AT_rich Low_complexity Low_complexity 1 22 0 259 133 22 56 chr1 199034315 199034405 -83159259 + GA-rich Low_complexity Low_complexity 2 88 0 378 74 0 0 chr1 199034936 199034990 -83158674 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 373 174 28 34 chr1 199036076 199036254 -83157410 + (TA)n Simple_repeat Simple_repeat 2 178 0 309 283 9 53 chr1 199036322 199036435 -83157229 + MIR3 SINE MIR 86 193 -15 251 252 96 74 chr1 199036495 199036765 -83156899 - LTR16C LTR ERVL -60 431 156 232 359 59 29 chr1 199037875 199038045 -83155619 - MIR SINE MIR -48 214 40 482 278 35 6 chr1 199039022 199039191 -83154473 + MIR SINE MIR 15 188 -74 22 0 0 0 chr1 199039211 199039233 -83154431 + AT_rich Low_complexity Low_complexity 1 22 0 325 234 127 102 chr1 199039265 199039470 -83154194 - L2 LINE L2 0 3313 3104 218 240 0 0 chr1 199039524 199039574 -83154090 - L2 LINE L2 -786 2528 2479 456 272 228 18 chr1 199039598 199040079 -83153585 + L2 LINE L2 2716 3313 0 240 287 43 11 chr1 199041528 199041622 -83152042 + MIR SINE MIR 52 148 -114 570 268 37 53 chr1 199041692 199041935 -83151729 - MIR SINE MIR 0 262 24 412 308 82 71 chr1 199041961 199042325 -83151339 - L2 LINE L2 -54 3218 2851 760 218 58 0 chr1 199043915 199044089 -83149575 + MER5A DNA MER1_type 5 188 -1 367 235 12 12 chr1 199047495 199047580 -83146084 + MIR3 SINE MIR 96 180 -28 356 225 11 0 chr1 199047606 199047695 -83145969 - Charlie4 DNA MER1_type -54 1907 1818 262 304 65 11 chr1 199047826 199047918 -83145746 + MIR SINE MIR 76 172 -90 220 366 15 30 chr1 199047964 199048095 -83145569 - MIR SINE MIR -60 148 20 1783 92 141 0 chr1 199050248 199050510 -83143154 - AluSg SINE Alu -1 299 1 231 261 216 0 chr1 199052715 199052803 -83140861 - L2 LINE L2 -8 3264 3158 242 357 71 18 chr1 199054056 199054490 -83139174 + L2 LINE L2 2070 2526 -788 218 246 101 0 chr1 199054619 199054688 -83138976 + MIR SINE MIR 183 258 -4 288 322 52 9 chr1 199054936 199055051 -83138613 + L2 LINE L2 3138 3257 -15 660 234 66 51 chr1 199055777 199056034 -83137630 + MIR SINE MIR 2 262 0 218 227 0 0 chr1 199056484 199056528 -83137136 + A-rich Low_complexity Low_complexity 1 44 0 269 307 50 20 chr1 199056778 199056879 -83136785 - MIR SINE MIR -68 140 37 296 401 15 0 chr1 199057052 199057189 -83136475 - L2 LINE L2 -5 3267 3129 2053 127 3 16 chr1 199057760 199058074 -83135590 + AluSx SINE Alu 1 310 -2 234 208 0 0 chr1 199058332 199058385 -83135279 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 2392 83 3 10 chr1 199058528 199058840 -83134824 + AluSp SINE Alu 1 310 -3 254 352 44 22 chr1 199058916 199059143 -83134521 - L2 LINE L2 -195 3077 2846 221 306 123 35 chr1 199059426 199059596 -83134068 - L2 LINE L2 -805 2509 2325 282 318 24 16 chr1 199062162 199062288 -83131376 + MIR SINE MIR 112 238 -24 422 250 101 20 chr1 199062371 199062519 -83131145 - MIR SINE MIR -74 188 29 2513 76 0 0 chr1 199064011 199064314 -83129350 + AluSg SINE Alu 1 303 -7 400 284 58 77 chr1 199067212 199067575 -83126089 + L2 LINE L2 2220 2575 -739 612 331 15 8 chr1 199067580 199067825 -83125839 + MIR SINE MIR 11 259 -3 180 0 0 0 chr1 199070294 199070314 -83123350 + (TC)n Simple_repeat Simple_repeat 1 20 0 1175 238 115 26 chr1 199070737 199071162 -83122502 - MLT1C LTR MaLR -4 463 1 27 29 0 0 chr1 199072406 199072440 -83121224 + AT_rich Low_complexity Low_complexity 1 34 0 679 263 0 16 chr1 199073156 199073342 -83120322 + L3 LINE CR1 1146 1328 -249 2035 140 34 0 chr1 199073592 199073885 -83119779 + AluSx SINE Alu 5 307 -5 194 317 12 12 chr1 199074180 199074262 -83119402 - MER5A DNA MER1_type -105 84 3 261 0 0 0 chr1 199075149 199075178 -83118486 + (CA)n Simple_repeat Simple_repeat 2 30 0 477 298 37 0 chr1 199075598 199075759 -83117905 + MIR SINE MIR 79 245 -17 204 301 146 0 chr1 199075739 199075842 -83117822 + L2 LINE L2 3150 3267 -5 * 6762 137 67 17 chr1 199077578 199077721 -83115943 - Tigger3b DNA MER2_type -1797 1231 1097 1969 146 40 15 chr1 199077721 199078050 -83115614 + MER1B DNA MER1_type 1 337 0 6762 137 67 17 chr1 199078050 199079076 -83114588 - Tigger3b DNA MER2_type -1931 1097 4 1628 197 52 9 chr1 199079217 199079542 -83114122 - MER58B DNA MER1_type -2 339 1 205 327 36 18 chr1 199079557 199079667 -83113997 - MIR SINE MIR -49 213 102 1962 210 96 12 chr1 199080591 199081081 -83112583 - MER92B LTR ERV1 0 636 106 400 313 8 8 chr1 199081118 199081252 -83112412 - MIR SINE MIR -99 163 30 275 271 222 7 chr1 199082236 199082380 -83111284 - MIR SINE MIR -2 260 86 227 353 81 19 chr1 199083589 199083850 -83109814 + L2 LINE L2 2479 2755 -559 188 290 81 0 chr1 199084241 199084303 -83109361 + L2 LINE L2 3208 3274 -39 775 307 114 43 chr1 199085138 199085930 -83107734 + L2 LINE L2 2046 2893 -421 312 250 11 45 chr1 199087787 199087875 -83105789 + L2 LINE L2 3188 3272 0 182 256 0 0 chr1 199088964 199089007 -83104657 - L2 LINE L2 0 3272 3230 292 188 63 37 chr1 199089468 199089593 -83104071 + FLAM_A SINE Alu 40 93 -40 194 128 26 0 chr1 199089898 199089937 -83103727 + (TAA)n Simple_repeat Simple_repeat 2 41 0 356 279 87 19 chr1 199089950 199090111 -83103553 - MIR SINE MIR -17 245 74 425 346 48 16 chr1 199090271 199090459 -83103205 - MIR3 SINE MIR -3 205 12 1640 174 79 9 chr1 199090487 199090804 -83102860 + MER44D DNA MER2_type 1 609 0 697 283 61 42 chr1 199091309 199091669 -83101995 + L2 LINE L2 2928 3294 -19 572 221 162 0 chr1 199092370 199092524 -83101140 + MER5A DNA MER1_type 11 189 0 2354 71 10 7 chr1 199092826 199093123 -83100541 - AluY SINE Alu -13 298 1 386 314 30 6 chr1 199093133 199093302 -83100362 + MIR SINE MIR 53 225 -37 285 250 0 0 chr1 199093582 199093642 -83100022 + L2 LINE L2 3213 3272 0 221 309 62 0 chr1 199094639 199094720 -83098944 - L2 LINE L2 0 3272 3187 216 217 33 0 chr1 199095019 199095111 -83098553 + (TA)n Simple_repeat Simple_repeat 1 95 0 29 28 0 0 chr1 199095124 199095160 -83098504 + AT_rich Low_complexity Low_complexity 1 36 0 200 361 71 22 chr1 199095507 199095690 -83097974 - L2 LINE L2 -173 3099 2908 2253 169 102 9 chr1 199096180 199096641 -83097023 + MLT1D LTR MaLR 2 505 0 2490 68 0 0 chr1 199096743 199097036 -83096628 + AluY SINE Alu 1 293 -18 2249 92 4 0 chr1 199098201 199098482 -83095182 + AluSp SINE Alu 1 282 -31 294 29 0 0 chr1 199098488 199098523 -83095141 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 212 292 83 0 chr1 199098797 199098869 -83094795 - L2 LINE L2 -11 3261 3184 562 243 59 75 chr1 199101639 199101878 -83091786 - MER112 DNA MER1_type -11 249 15 342 80 0 0 chr1 199102764 199102814 -83090850 + (TC)n Simple_repeat Simple_repeat 1 50 0 445 243 103 29 chr1 199103536 199103672 -83089992 - MIR SINE MIR 0 262 117 220 267 60 52 chr1 199103870 199103986 -83089678 + MIR SINE MIR 75 191 -71 183 265 0 0 chr1 199104341 199104390 -83089274 - L2 LINE L2 -12 3260 3212 295 234 0 0 chr1 199104395 199104459 -83089205 - MIR SINE MIR -114 148 85 262 273 27 9 chr1 199104674 199104784 -83088880 + (TA)n Simple_repeat Simple_repeat 1 112 0 192 343 20 10 chr1 199105621 199105720 -83087944 + MIR3 SINE MIR 108 207 -1 * 206 330 59 51 chr1 199105702 199105820 -83087844 + MIR SINE MIR 73 191 -71 1902 121 40 34 chr1 199105848 199106145 -83087519 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr1 199106639 199106666 -83086998 + AT_rich Low_complexity Low_complexity 1 27 0 661 117 8 8 chr1 199106817 199106937 -83086727 + (GGAA)n Simple_repeat Simple_repeat 4 123 0 2789 178 39 15 chr1 199107165 199107711 -83085953 + MER89 LTR ERV1 1 559 0 320 244 51 0 chr1 199107854 199107932 -83085732 + MER103 DNA DNA 3 84 -82 200 206 0 0 chr1 199108986 199109020 -83084644 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 216 118 0 chr1 199109161 199109212 -83084452 - L2 LINE L2 0 3313 3257 * 873 225 63 9 chr1 199109189 199109411 -83084253 - MIR SINE MIR -28 234 1 661 82 21 10 chr1 199109539 199109636 -83084028 + MER4A LTR ERV1 1 98 -566 1702 131 163 83 chr1 199109636 199109837 -83083827 + MER4A LTR ERV1 261 444 -220 393 22 0 0 chr1 199109837 199109883 -83083781 + (TA)n Simple_repeat Simple_repeat 1 46 0 1702 131 163 83 chr1 199109883 199110055 -83083609 + MER4A LTR ERV1 444 664 0 357 195 122 24 chr1 199110342 199110465 -83083199 - MIR SINE MIR -81 181 47 1392 66 6 0 chr1 199111096 199111263 -83082401 - AluSp SINE Alu -15 298 131 1930 141 0 14 chr1 199111286 199111569 -83082095 - AluJb SINE Alu -22 290 12 192 77 0 0 chr1 199112046 199112072 -83081592 + (TCC)n Simple_repeat Simple_repeat 2 27 0 954 167 223 40 chr1 199112186 199112540 -83081124 - Charlie1 DNA MER1_type 0 2761 2343 270 324 0 0 chr1 199112538 199112609 -83081055 - Charlie1 DNA MER1_type -2690 71 1 * 580 210 57 6 chr1 199114161 199114318 -83079346 + MIR SINE MIR 88 252 -10 229 306 58 74 chr1 199114802 199114923 -83078741 + L2 LINE L2 3154 3272 0 247 358 53 0 chr1 199115185 199115280 -83078384 + L2 LINE L2 3146 3245 -27 227 255 0 0 chr1 199115300 199115347 -83078317 + G-rich Low_complexity Low_complexity 2 48 0 306 337 10 2 chr1 199115484 199115593 -83078071 + MIR SINE MIR 38 145 -63 203 190 224 0 chr1 199115971 199116029 -83077635 + MIR3 SINE MIR 120 190 -18 268 132 0 0 chr1 199116123 199116161 -83077503 - MER81 DNA DNA -34 80 43 739 244 61 9 chr1 199117176 199117405 -83076259 - MIR SINE MIR -9 253 13 236 302 16 54 chr1 199117439 199117568 -83076096 - MIR SINE MIR -1 261 138 290 245 61 20 chr1 199117707 199117805 -83075859 - MIR SINE MIR -156 106 5 412 339 0 23 chr1 199118910 199119087 -83074577 - MIR SINE MIR -88 174 2 282 143 0 0 chr1 199119283 199119332 -83074332 + (CA)n Simple_repeat Simple_repeat 2 50 0 2317 194 19 15 chr1 199121134 199121607 -83072057 + MLT1D LTR MaLR 21 495 -10 207 314 14 0 chr1 199123238 199123308 -83070356 + CT-rich Low_complexity Low_complexity 2 72 0 1743 154 0 28 chr1 199123922 199124208 -83069456 - AluJo SINE Alu -22 290 13 24 0 0 0 chr1 199124308 199124332 -83069332 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 199126528 199126549 -83067115 + AT_rich Low_complexity Low_complexity 1 21 0 261 109 0 0 chr1 199127038 199127084 -83066580 + (CA)n Simple_repeat Simple_repeat 1 46 0 407 313 41 79 chr1 199127779 199128146 -83065518 + L2 LINE L2 2918 3270 -2 291 272 88 0 chr1 199128494 199128619 -83065045 - MIR SINE MIR -70 192 57 186 345 50 25 chr1 199129438 199129557 -83064107 - L2 LINE L2 -10 3262 3141 407 295 24 12 chr1 199129693 199129859 -83063805 - MER5B DNA MER1_type -9 169 2 221 343 20 20 chr1 199129868 199129970 -83063694 + L2 LINE L2 3193 3294 -19 235 217 58 43 chr1 199131375 199131444 -83062220 + L2 LINE L2 3201 3270 -2 557 322 56 52 chr1 199131787 199132024 -83061640 - MIR SINE MIR -6 256 18 339 290 56 9 chr1 199132281 199132388 -83061276 - L2 LINE L2 -4 3268 3157 193 272 35 70 chr1 199132601 199132715 -83060949 + MIR SINE MIR 20 129 -133 21 0 0 0 chr1 199133231 199133252 -83060412 + AT_rich Low_complexity Low_complexity 1 21 0 1259 252 115 56 chr1 199133282 199134019 -83059645 + MER20B DNA MER1_type 2 782 -2 927 255 12 29 chr1 199135022 199135265 -83058399 + MIR SINE MIR 2 240 -22 235 250 107 57 chr1 199135703 199135843 -83057821 - L2 LINE L2 -1 3312 3166 207 0 0 0 chr1 199136824 199136847 -83056817 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 477 148 0 0 chr1 199137569 199137650 -83056014 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 315 192 0 0 chr1 199137705 199137778 -83055886 + (TG)n Simple_repeat Simple_repeat 2 74 0 427 274 123 85 chr1 199138479 199138796 -83054868 + L2 LINE L2 2924 3252 -20 317 320 16 39 chr1 199138825 199138916 -83054748 + MIR SINE MIR 36 125 -137 2087 169 48 0 chr1 199138916 199139248 -83054416 - MER7A DNA MER2_type 0 346 1 317 320 16 39 chr1 199139248 199139284 -83054380 + MIR SINE MIR 125 160 -102 387 370 72 17 chr1 199139299 199139480 -83054184 - L2 LINE L2 -2046 1268 1078 832 187 6 29 chr1 199139508 199139679 -83053985 - FRAM SINE Alu -9 167 1 409 206 0 0 chr1 199139849 199139922 -83053742 + MIR SINE MIR 35 107 -155 2739 266 94 4 chr1 199139923 199140842 -83052822 + L2 LINE L2 539 1539 -1775 367 320 33 26 chr1 199141207 199141360 -83052304 + MIR SINE MIR 109 262 0 2401 77 0 3 chr1 199141404 199141701 -83051963 - AluSg SINE Alu -14 296 1 371 279 40 52 chr1 199142188 199142439 -83051225 - MIR SINE MIR 0 262 15 252 339 103 30 chr1 199142744 199142909 -83050755 - MER5B DNA MER1_type -1 177 1 322 241 21 110 chr1 199143553 199143698 -83049966 + MIR SINE MIR 31 162 -100 192 333 75 0 chr1 199144444 199144537 -83049127 - L2 LINE L2 -4 3309 3210 621 296 72 18 chr1 199144614 199144837 -83048827 - MIR SINE MIR 0 262 28 245 273 61 0 chr1 199145857 199145923 -83047741 - MIR SINE MIR -110 152 83 300 237 79 0 chr1 199145946 199146022 -83047642 - L2 LINE L2 0 3272 3191 490 335 114 20 chr1 199146343 199146701 -83046963 + L2 LINE L2 2897 3288 -25 233 53 53 0 chr1 199146703 199146741 -83046923 + A-rich Low_complexity Low_complexity 2 41 0 278 347 30 90 chr1 199147875 199147946 -83045718 - L2 LINE L2 -1 3271 3197 2308 119 0 0 chr1 199147946 199148258 -83045406 + AluSx SINE Alu 1 312 0 278 347 30 90 chr1 199148258 199148353 -83045311 - L2 LINE L2 -75 3197 3115 1550 144 15 8 chr1 199148363 199148626 -83045038 + MLT1C LTR MaLR 5 269 -198 295 285 57 25 chr1 199148657 199148815 -83044849 - L2 LINE L2 -778 2536 2374 717 193 52 0 chr1 199149411 199149546 -83044118 - MER5A DNA MER1_type 0 189 48 238 182 23 0 chr1 199149546 199149590 -83044074 + 5S rRNA rRNA 1 45 -76 280 204 19 0 chr1 199149590 199149644 -83044020 - MER5A DNA MER1_type -129 60 6 406 261 159 7 chr1 199149657 199149795 -83043869 - MER5B DNA MER1_type -19 159 1 186 361 95 38 chr1 199149798 199149956 -83043708 - L2 LINE L2 -33 3239 3073 253 298 75 56 chr1 199151384 199151545 -83042119 + L3 LINE CR1 1372 1535 -42 416 267 181 29 chr1 199151642 199151919 -83041745 - L3 LINE CR1 -150 1427 1109 462 18 0 0 chr1 199152862 199152917 -83040747 + (CA)n Simple_repeat Simple_repeat 2 56 0 617 277 32 116 chr1 199153627 199153912 -83039752 + MIR SINE MIR 2 262 0 1008 182 32 36 chr1 199153973 199154193 -83039471 + MER20 DNA MER1_type 1 219 0 1229 228 0 0 chr1 199154201 199154425 -83039239 - MER58A DNA MER1_type 0 224 1 513 286 89 78 chr1 199154777 199155325 -83038339 - L2 LINE L2 -670 2644 2091 195 100 0 0 chr1 199156682 199156712 -83036952 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 213 353 0 17 chr1 199157458 199157577 -83036087 + GA-rich Low_complexity Low_complexity 2 118 0 2330 88 3 25 chr1 199158142 199158462 -83035202 + AluSp SINE Alu 1 313 0 215 239 90 30 chr1 199158570 199158637 -83035027 + MIR SINE MIR 30 100 -108 373 336 7 15 chr1 199158727 199158864 -83034800 + MIR SINE MIR 18 153 -109 653 238 21 26 chr1 199158893 199159082 -83034582 - MER119 DNA MER1_type -1 582 395 398 295 90 0 chr1 199159080 199159202 -83034462 - MER119 DNA MER1_type -450 133 1 * 1288 203 78 62 chr1 199159843 199160227 -83033437 + MLT1B LTR MaLR 1 390 0 241 324 29 0 chr1 199160280 199160348 -83033316 - L2 LINE L2 -86 3186 3117 284 82 0 41 chr1 199160796 199160845 -83032819 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 210 71 0 0 chr1 199161024 199161052 -83032612 + (TG)n Simple_repeat Simple_repeat 1 28 0 1817 126 71 0 chr1 199161386 199161655 -83032009 - AluSx SINE Alu -20 292 5 659 192 33 26 chr1 199161727 199161878 -83031786 + MIR SINE MIR 111 262 0 299 316 0 20 chr1 199161861 199161959 -83031705 + L2 LINE L2 3177 3272 0 * 354 308 56 114 chr1 199162158 199162904 -83030760 - L2 LINE L2 -4 3268 2564 261 0 0 0 chr1 199163278 199163307 -83030357 + (TC)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chr1 199163306 199163328 -83030336 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 252 100 0 0 chr1 199163328 199163368 -83030296 + (GA)n Simple_repeat Simple_repeat 1 40 0 729 255 69 23 chr1 199164191 199164407 -83029257 - MIR SINE MIR -35 227 2 220 353 43 51 chr1 199164796 199165031 -83028633 - L2 LINE L2 -173 3099 2867 506 266 208 19 chr1 199165121 199165328 -83028336 + MIR SINE MIR 17 262 0 195 305 0 0 chr1 199165331 199165390 -83028274 + MIR SINE MIR 185 243 -19 727 238 112 14 chr1 199165844 199166067 -83027597 + MIR SINE MIR 18 262 0 1426 261 88 125 chr1 199166453 199166655 -83027009 + L3 LINE CR1 466 674 -903 2044 123 70 22 chr1 199166655 199167012 -83026652 + THE1C LTR MaLR 1 374 -1 1426 261 88 125 chr1 199167012 199167944 -83025720 + L3 LINE CR1 674 1558 -19 376 318 25 30 chr1 199168177 199168375 -83025289 - L2 LINE L2 -6 3307 3111 500 308 57 32 chr1 199168410 199168657 -83025007 - MIR SINE MIR -8 254 2 408 20 0 0 chr1 199169385 199169434 -83024230 + (CA)n Simple_repeat Simple_repeat 2 50 0 8737 173 27 28 chr1 199169870 199170545 -83023119 + L1P5 LINE L1 3371 4045 -2109 2272 121 0 3 chr1 199170545 199170858 -83022806 + AluSq SINE Alu 1 312 -1 8737 173 27 28 chr1 199170858 199171502 -83022162 + L1P5 LINE L1 4045 4688 -1466 180 0 0 0 chr1 199171502 199171522 -83022142 + (CAA)n Simple_repeat Simple_repeat 2 21 0 8737 173 27 28 chr1 199171522 199172654 -83021010 + L1P5 LINE L1 4688 5808 -346 1186 89 5 84 chr1 199172735 199172925 -83020739 - AluSq SINE Alu -138 175 1 343 215 0 0 chr1 199174060 199174125 -83019539 + MIR SINE MIR 77 141 -67 2181 97 10 3 chr1 199174128 199174418 -83019246 + AluSp SINE Alu 2 293 -20 355 314 8 17 chr1 199174556 199174674 -83018990 + MER5B DNA MER1_type 6 122 -56 419 296 62 73 chr1 199174818 199174997 -83018667 - MER91A DNA MER1_type -6 190 14 781 135 22 22 chr1 199175395 199175573 -83018091 + GA-rich Low_complexity Low_complexity 3 180 0 574 206 10 0 chr1 199175575 199175677 -83017987 + polypurine Low_complexity Low_complexity 3 105 0 203 244 0 0 chr1 199175737 199175778 -83017886 + GA-rich Low_complexity Low_complexity 1 41 0 202 364 52 35 chr1 199178049 199178222 -83015442 + L2 LINE L2 2797 2972 -342 203 307 139 20 chr1 199178400 199178501 -83015163 + L2 LINE L2 3151 3263 -9 642 165 35 0 chr1 199178574 199178744 -83014920 + (CA)n Simple_repeat Simple_repeat 1 176 0 252 350 51 46 chr1 199180386 199180603 -83013061 - L3 LINE CR1 -310 1267 1050 954 183 0 12 chr1 199180916 199181080 -83012584 + FRAM SINE Alu 1 162 -4 653 130 43 0 chr1 199181087 199181202 -83012462 + L1MB4 LINE L1 6059 6178 -2 195 340 104 38 chr1 199182177 199182283 -83011381 + L2 LINE L2 3201 3313 0 * 282 333 109 22 chr1 199182278 199182461 -83011203 - MIR SINE MIR -62 200 2 243 103 0 0 chr1 199185353 199185392 -83008272 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 573 291 136 0 chr1 199186121 199186327 -83007337 + MIR SINE MIR 11 244 -18 1823 177 0 10 chr1 199186893 199187204 -83006460 - AluJb SINE Alu -4 308 1 1735 198 61 72 chr1 199187226 199187737 -83005927 - MLT1D LTR MaLR 0 505 1 213 65 0 0 chr1 199187862 199187893 -83005771 + (TG)n Simple_repeat Simple_repeat 2 32 0 1381 239 85 12 chr1 199189612 199190118 -83003546 + L1ME4a LINE L1 5575 6117 -4 250 243 0 0 chr1 199192431 199192501 -83001163 + T-rich Low_complexity Low_complexity 1 70 0 204 191 73 146 chr1 199192674 199192784 -83000880 - MIR SINE MIR -37 225 124 192 347 32 16 chr1 199193364 199193488 -83000176 + L2 LINE L2 2371 2496 -818 1761 97 8 0 chr1 199193522 199193770 -82999894 - L1M1 LINE L1 -646 5659 5410 273 291 47 24 chr1 199194110 199194237 -82999427 + L2 LINE L2 2924 3053 -219 483 18 0 0 chr1 199194730 199194786 -82998878 + (TG)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr1 199194891 199194913 -82998751 + AT_rich Low_complexity Low_complexity 1 22 0 217 352 105 0 chr1 199195022 199195127 -82998537 - L2 LINE L2 -8 3264 3149 291 269 31 46 chr1 199195794 199195924 -82997740 - MIR SINE MIR -73 189 62 1021 292 43 56 chr1 199197135 199197741 -82995923 - L1ME4a LINE L1 -2 6119 5522 225 267 33 22 chr1 199198241 199198331 -82995333 + Charlie8 DNA MER1_type 4 94 -2323 321 26 0 0 chr1 199200140 199200178 -82993486 + (TG)n Simple_repeat Simple_repeat 1 38 0 279 323 31 8 chr1 199200365 199200492 -82993172 + MIR SINE MIR 112 241 -21 360 0 0 0 chr1 199201261 199201301 -82992363 + (CA)n Simple_repeat Simple_repeat 2 41 0 231 381 19 12 chr1 199201771 199201931 -82991733 + L3b LINE CR1 1338 1498 -85 462 277 39 0 chr1 199202147 199202277 -82991387 - MIR SINE MIR -116 146 12 223 229 229 10 chr1 199202711 199202807 -82990857 - MIR3 SINE MIR -49 159 43 2540 64 13 16 chr1 199203049 199203363 -82990301 - AluSp SINE Alu 0 313 1 24 32 0 0 chr1 199203593 199203624 -82990040 + AT_rich Low_complexity Low_complexity 1 31 0 2045 164 0 0 chr1 199203826 199204136 -82989528 - AluSx SINE Alu -2 310 1 265 335 110 46 chr1 199205169 199205450 -82988214 + L2 LINE L2 2957 3255 -17 351 216 26 9 chr1 199205457 199205573 -82988091 + GA-rich Low_complexity Low_complexity 4 121 0 313 284 15 75 chr1 199205682 199205816 -82987848 - L2 LINE L2 -6 3307 3182 203 320 191 0 chr1 199209589 199209767 -82983897 - MIR SINE MIR 0 262 51 22 35 0 0 chr1 199210942 199210971 -82982693 + AT_rich Low_complexity Low_complexity 1 29 0 321 26 0 0 chr1 199211193 199211231 -82982433 + (CA)n Simple_repeat Simple_repeat 2 39 0 276 237 17 0 chr1 199211940 199211999 -82981665 + GA-rich Low_complexity Low_complexity 6 65 0 193 335 53 101 chr1 199214083 199214459 -82979205 - L2 LINE L2 -83 3189 2832 230 359 44 24 chr1 199214492 199214743 -82978921 - L2 LINE L2 -546 2768 2513 332 341 31 0 chr1 199216524 199216653 -82977011 - MIR3 SINE MIR -46 162 30 1007 226 5 10 chr1 199218332 199218536 -82975128 + MER58A DNA MER1_type 3 205 -19 22 0 0 0 chr1 199218927 199218949 -82974715 + AT_rich Low_complexity Low_complexity 1 22 0 664 287 25 29 chr1 199219340 199219584 -82974080 - MIR SINE MIR -6 256 14 464 346 28 20 chr1 199219875 199220131 -82973533 + MIR SINE MIR 2 262 0 613 282 53 19 chr1 199221132 199221338 -82972326 + MIR SINE MIR 28 240 -22 198 103 0 0 chr1 199221350 199221379 -82972285 + (ATG)n Simple_repeat Simple_repeat 1 29 0 247 383 9 9 chr1 199222622 199222737 -82970927 - L3 LINE CR1 -176 1401 1287 246 62 0 0 chr1 199223579 199223611 -82970053 + (TA)n Simple_repeat Simple_repeat 2 33 0 730 110 0 0 chr1 199225710 199225819 -82967845 - L1PB1 LINE L1 -1 6150 6042 282 106 0 0 chr1 199225826 199225873 -82967791 + (CA)n Simple_repeat Simple_repeat 1 47 0 228 282 0 28 chr1 199226296 199226367 -82967297 + 7SK RNA RNA 2 70 -123 434 207 7 82 chr1 199227058 199227193 -82966471 - L2 LINE L2 0 3313 3189 1873 154 35 0 chr1 199227531 199227817 -82965847 - AluSx SINE Alu -16 296 1 1780 186 0 13 chr1 199229249 199229561 -82964103 - AluJo SINE Alu -4 308 1 203 311 16 0 chr1 199229798 199229859 -82963805 - L2 LINE L2 -1 3312 3251 837 138 69 0 chr1 199231323 199231468 -82962196 - L1MB7 LINE L1 -19 6165 6011 182 330 93 25 chr1 199232596 199232714 -82960950 - L2 LINE L2 -340 2974 2849 247 318 112 19 chr1 199232978 199233085 -82960579 + MIR3 SINE MIR 86 202 -6 188 186 157 29 chr1 199235595 199235665 -82957999 + MIR3 SINE MIR 110 188 -20 1450 187 14 14 chr1 199235826 199236109 -82957555 - AluJb SINE Alu -2 310 28 333 248 24 65 chr1 199237622 199237781 -82955883 - MIR SINE MIR -50 212 60 286 184 143 61 chr1 199240801 199240899 -82952765 + MIR SINE MIR 111 216 -46 2380 96 0 0 chr1 199242087 199242388 -82951276 - AluSg SINE Alu -9 301 1 213 39 0 0 chr1 199242619 199242645 -82951019 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1863 154 17 0 chr1 199242652 199242944 -82950720 - AluJo SINE Alu -1 311 15 2402 76 0 7 chr1 199243024 199243325 -82950339 + AluSc SINE Alu 11 309 0 2187 130 0 3 chr1 199243531 199243839 -82949825 - AluSx SINE Alu -5 307 1 370 281 207 18 chr1 199244409 199244573 -82949091 + MIR SINE MIR 30 224 -38 186 200 0 25 chr1 199245678 199245718 -82947946 + MIR SINE MIR 124 162 -100 21 0 0 0 chr1 199246496 199246517 -82947147 + AT_rich Low_complexity Low_complexity 1 21 0 206 246 98 0 chr1 199246781 199246842 -82946822 - MIR SINE MIR -115 147 81 198 0 0 0 chr1 199247276 199247298 -82946366 + (A)n Simple_repeat Simple_repeat 1 22 0 214 359 77 13 chr1 199247583 199247661 -82946003 - MIR SINE MIR -96 112 30 551 311 51 0 chr1 199247751 199247947 -82945717 + MIR SINE MIR 3 208 -54 366 232 21 11 chr1 199249316 199249411 -82944253 + MIR3 SINE MIR 109 204 -4 373 299 40 40 chr1 199250901 199251102 -82942562 - L3b LINE CR1 -131 1452 1252 294 359 99 8 chr1 199252180 199252311 -82941353 + MIR3 SINE MIR 41 183 -25 396 300 22 89 chr1 199252511 199252781 -82940883 + MIR SINE MIR 5 256 -6 192 346 158 0 chr1 199252898 199252999 -82940665 - MIR SINE MIR -55 153 37 328 256 138 71 chr1 199253511 199253851 -82939813 + L1ME4a LINE L1 5731 6093 -28 30 0 0 0 chr1 199255646 199255676 -82937988 + AT_rich Low_complexity Low_complexity 1 30 0 200 180 0 20 chr1 199255846 199255896 -82937768 + CT-rich Low_complexity Low_complexity 4 52 0 183 184 0 0 chr1 199256431 199256469 -82937195 + GA-rich Low_complexity Low_complexity 1 38 0 185 0 40 0 chr1 199257024 199257049 -82936615 + (CA)n Simple_repeat Simple_repeat 2 27 0 332 298 33 0 chr1 199257321 199257442 -82936222 - MIR SINE MIR -10 252 128 312 369 140 21 chr1 199257541 199257926 -82935738 - L3 LINE CR1 -2 1575 1145 683 325 118 35 chr1 199258159 199258559 -82935105 - L3 LINE CR1 -471 1106 674 2867 200 28 39 chr1 199258579 199259967 -82933697 - L1MB1 LINE L1 -22 6146 4743 285 286 33 11 chr1 199259967 199260058 -82933606 - L3 LINE CR1 -888 689 597 * 563 232 8 8 chr1 199260051 199260176 -82933488 + L2 LINE L2 3189 3313 0 353 316 35 9 chr1 199260217 199260331 -82933333 - L3 LINE CR1 -1036 541 425 453 299 132 6 chr1 199261154 199261328 -82932336 - MIR SINE MIR -65 197 2 1428 165 43 0 chr1 199261460 199261690 -82931974 + MLT1A1 LTR MaLR 126 365 0 9778 175 44 17 chr1 199261692 199263380 -82930284 + MLT1A1-int LTR MaLR 2 1735 0 2338 134 8 32 chr1 199263380 199263516 -82930148 + MLT1A1 LTR MaLR 1 139 -226 2460 132 5 22 chr1 199263516 199263886 -82929778 + THE1B LTR MaLR 1 364 0 2338 134 8 32 chr1 199263886 199264123 -82929541 + MLT1A1 LTR MaLR 139 365 0 323 365 44 0 chr1 199264387 199264524 -82929140 + MIR SINE MIR 16 158 -104 2554 245 57 62 chr1 199264553 199265358 -82928306 + MER21B LTR ERV1 12 812 -51 187 276 253 0 chr1 199265383 199265470 -82928194 + MIR SINE MIR 154 262 0 192 200 40 20 chr1 199266541 199266591 -82927073 + L2 LINE L2 3222 3272 0 21 0 0 0 chr1 199266591 199266612 -82927052 + AT_rich Low_complexity Low_complexity 1 21 0 408 314 33 0 chr1 199266957 199267110 -82926554 - MIR3 SINE MIR -15 193 36 2132 118 10 10 chr1 199267827 199268132 -82925532 + AluSq SINE Alu 1 305 -8 1802 273 39 15 chr1 199268144 199268734 -82924930 + L1ME3A LINE L1 5566 6169 -1 377 285 70 25 chr1 199269281 199269439 -82924225 - MIR SINE MIR -69 193 29 268 288 79 36 chr1 199270002 199270141 -82923523 + MIR SINE MIR 102 246 -16 265 273 149 16 chr1 199270719 199270840 -82922824 - MIR SINE MIR -36 226 90 199 277 99 20 chr1 199271036 199271137 -82922527 - L2 LINE L2 -7 3265 3157 201 287 62 82 chr1 199272039 199272234 -82921430 + MIR SINE MIR 34 224 -38 429 295 18 96 chr1 199272710 199272865 -82920799 - MIR SINE MIR -1 261 136 1034 158 0 29 chr1 199272865 199273036 -82920628 + FRAM SINE Alu 1 166 0 429 295 18 96 chr1 199273036 199273161 -82920503 - MIR SINE MIR -126 136 3 410 206 98 0 chr1 199274108 199274200 -82919464 + MER5A DNA MER1_type 6 106 -83 366 207 69 52 chr1 199274460 199274576 -82919088 + LTR33 LTR ERVL 15 132 -389 397 245 134 74 chr1 199274652 199274868 -82918796 + LTR33 LTR ERVL 290 518 -3 2422 97 0 3 chr1 199275084 199275394 -82918270 + AluSc SINE Alu 1 309 0 1332 107 30 95 chr1 199275422 199275684 -82917980 - L1MB3 LINE L1 -230 5953 5709 412 328 88 50 chr1 199275684 199276068 -82917596 - L2 LINE L2 -890 2424 2026 23 33 0 0 chr1 199276169 199276199 -82917465 + AT_rich Low_complexity Low_complexity 1 30 0 204 40 0 0 chr1 199276456 199276481 -82917183 + (GA)n Simple_repeat Simple_repeat 2 26 0 448 322 34 39 chr1 199276615 199276820 -82916844 + L3b LINE CR1 1354 1557 -26 510 290 60 44 chr1 199277586 199277838 -82915826 - MIR SINE MIR -6 256 1 271 310 259 0 chr1 199278136 199278333 -82915331 - MIR SINE MIR -7 255 8 693 185 172 0 chr1 199278369 199278520 -82915144 - MER5A DNA MER1_type 0 189 13 335 169 28 56 chr1 199280354 199280425 -82913239 - Tigger4(Zombi) DNA MER2_type 0 2731 2663 736 296 24 20 chr1 199281105 199281358 -82912306 + MIR SINE MIR 3 256 -6 1503 187 10 69 chr1 199281453 199281804 -82911860 - L1MD2 LINE L1 -2 6357 6001 330 315 9 9 chr1 199281984 199282095 -82911569 + GA-rich Low_complexity Low_complexity 2 112 0 1766 135 58 0 chr1 199282411 199282671 -82910993 + AluSx SINE Alu 6 280 -32 396 0 0 0 chr1 199282672 199282716 -82910948 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 673 229 62 35 chr1 199282717 199282975 -82910689 - L1ME4a LINE L1 -12 6109 5845 274 346 142 19 chr1 199283476 199284173 -82909491 + L2 LINE L2 1653 2435 -879 512 289 7 7 chr1 199284437 199284579 -82909085 - L2 LINE L2 -7 3306 3165 217 415 48 5 chr1 199284726 199284914 -82908750 + L2 LINE L2 2882 3077 -195 488 264 36 104 chr1 199285969 199286306 -82907358 + L2 LINE L2 2942 3255 -17 197 273 15 30 chr1 199288294 199288360 -82905304 + MIR SINE MIR 79 143 -119 266 311 50 97 chr1 199288417 199288655 -82905009 + MIR SINE MIR 28 254 -8 181 250 23 0 chr1 199288690 199288734 -82904930 + MIR3 SINE MIR 163 207 -1 200 183 73 98 chr1 199290466 199290548 -82903116 - MIR SINE MIR -72 190 111 270 384 34 41 chr1 199291958 199292104 -82901560 - L2 LINE L2 -6 3266 3122 23 33 0 0 chr1 199294151 199294181 -82899483 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr1 199294308 199294341 -82899323 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr1 199295009 199295044 -82898620 + AT_rich Low_complexity Low_complexity 1 35 0 2175 113 7 13 chr1 199296704 199297014 -82896650 + AluSc SINE Alu 2 309 0 457 202 0 0 chr1 199297031 199297115 -82896549 - MIR SINE MIR -108 154 71 869 178 14 42 chr1 199298158 199298372 -82895292 + L1ME LINE L1 5522 5729 -392 221 346 119 10 chr1 199298438 199298539 -82895125 - L2 LINE L2 -5 3267 3156 1664 173 104 37 chr1 199298688 199299093 -82894571 - MSTB1 LTR MaLR 0 432 1 253 270 60 0 chr1 199299093 199299193 -82894471 + L1ME4a LINE L1 6005 6110 -11 202 278 144 10 chr1 199300271 199300368 -82893296 - MIR SINE MIR -133 129 20 284 296 45 0 chr1 199302535 199302623 -82891041 - MIR SINE MIR -56 152 61 343 275 12 0 chr1 199302711 199302791 -82890873 + MIR3 SINE MIR 111 191 -17 441 215 264 7 chr1 199302805 199302949 -82890715 + MER5A DNA MER1_type 9 189 0 2126 137 0 3 chr1 199303357 199303670 -82889994 - AluSx SINE Alu 0 312 1 785 179 158 11 chr1 199303911 199304101 -82889563 - MER20 DNA MER1_type -1 218 1 361 278 119 0 chr1 199304515 199304641 -82889023 - MIR3 SINE MIR -4 204 64 269 269 206 21 chr1 199305870 199306011 -82887653 - MIR SINE MIR -92 170 4 502 321 41 23 chr1 199307814 199307951 -82885713 + MIR SINE MIR 15 159 -103 2186 112 6 3 chr1 199307951 199308263 -82885401 + AluSq SINE Alu 1 313 0 502 321 41 23 chr1 199308263 199308346 -82885318 + MIR SINE MIR 159 239 -23 22 35 0 0 chr1 199310671 199310700 -82882964 + AT_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr1 199310758 199310815 -82882849 + AT_rich Low_complexity Low_complexity 1 57 0 486 261 25 6 chr1 199310838 199310995 -82882669 + L1MD3 LINE L1 7826 7985 -10 2587 44 0 0 chr1 199311270 199311568 -82882096 - AluY SINE Alu -13 298 1 210 105 0 0 chr1 199312675 199312713 -82880951 + (CAGT)n Simple_repeat Simple_repeat 4 41 0 5423 207 53 15 chr1 199312906 199314299 -82879365 - Charlie1a DNA MER1_type 0 1455 10 306 338 106 25 chr1 199314343 199314503 -82879161 - L2 LINE L2 -10 3262 3090 2458 66 0 0 chr1 199315153 199315455 -82878209 + AluY SINE Alu 1 302 -9 265 218 158 30 chr1 199315707 199315840 -82877824 - L2 LINE L2 -1274 2040 1891 544 98 0 72 chr1 199316040 199316233 -82877431 + (TA)n Simple_repeat Simple_repeat 2 180 0 789 80 0 71 chr1 199316251 199316929 -82876735 + (TA)n Simple_repeat Simple_repeat 1 630 0 284 360 12 0 chr1 199316956 199317042 -82876622 + L2 LINE L2 3161 3247 -25 756 234 58 19 chr1 199317790 199317995 -82875669 + MER58A DNA MER1_type 1 213 -11 476 269 115 66 chr1 199318282 199318691 -82874973 + MLT1J LTR MaLR 31 459 -52 384 298 48 58 chr1 199319455 199320043 -82873621 + L1MC4a LINE L1 4359 4940 -1206 2220 164 32 32 chr1 199320049 199320481 -82873183 + MSTB1 LTR MaLR 1 432 0 405 298 15 99 chr1 199320517 199320859 -82872805 + L1MC4a LINE L1 4955 5267 -879 678 308 21 30 chr1 199320883 199321284 -82872380 + L1MC4a LINE L1 5431 5754 -408 897 228 20 5 chr1 199321332 199321534 -82872130 - MER3 DNA MER1_type -3 206 2 713 157 46 42 chr1 199321906 199323006 -82870658 + L1MC2 LINE L1 5674 6768 -986 2360 106 0 0 chr1 199323006 199323307 -82870357 + AluSg SINE Alu 1 301 -9 713 157 46 42 chr1 199323307 199323586 -82870078 + L1MC2 LINE L1 6768 7044 -710 192 77 0 0 chr1 199323586 199323612 -82870052 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 713 157 46 42 chr1 199323612 199324303 -82869361 + L1MC2 LINE L1 7044 7731 -23 240 59 0 0 chr1 199324303 199324337 -82869327 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1637 199 17 0 chr1 199324339 199324630 -82869034 - AluJb SINE Alu -16 296 1 713 157 46 42 chr1 199324630 199324673 -82868991 + L1MC2 LINE L1 7731 7754 0 428 291 112 23 chr1 199324846 199325211 -82868453 - L1ME3A LINE L1 -233 5937 5531 29 47 0 0 chr1 199325369 199325412 -82868252 + AT_rich Low_complexity Low_complexity 1 43 0 349 106 0 30 chr1 199325672 199325738 -82867926 + (TG)n Simple_repeat Simple_repeat 2 65 0 2183 106 3 29 chr1 199325792 199326104 -82867560 + AluSq SINE Alu 1 304 -9 354 369 7 8 chr1 199327159 199327300 -82866364 + MIR SINE MIR 5 145 -63 221 303 53 26 chr1 199327285 199327361 -82866303 - MIR SINE MIR -177 85 8 * 219 299 56 96 chr1 199328503 199328754 -82864910 - L2 LINE L2 -226 3046 2806 250 152 15 30 chr1 199331732 199331798 -82861866 + GA-rich Low_complexity Low_complexity 3 67 0 228 300 38 12 chr1 199331914 199331994 -82861670 + G-rich Low_complexity Low_complexity 1 82 0 180 0 0 0 chr1 199332809 199332829 -82860835 + (CCA)n Simple_repeat Simple_repeat 1 20 0 264 171 61 85 chr1 199333617 199333699 -82859965 - MIR3 SINE MIR -14 194 115 190 363 186 0 chr1 199333832 199333934 -82859730 - L2 LINE L2 -4 3268 3148 701 229 120 0 chr1 199334502 199334694 -82858970 - L1ME3 LINE L1 -189 5973 5759 189 345 129 14 chr1 199334770 199334909 -82858755 + L2 LINE L2 2573 2727 -587 250 317 67 8 chr1 199335322 199335442 -82858222 + MIR SINE MIR 120 246 -16 1544 251 103 17 chr1 199335560 199336043 -82857621 + L1ME3 LINE L1 5636 6160 -2 193 164 18 36 chr1 199336981 199337036 -82856628 + CT-rich Low_complexity Low_complexity 4 57 0 324 0 0 0 chr1 199337410 199337446 -82856218 + (TG)n Simple_repeat Simple_repeat 2 37 0 228 67 0 0 chr1 199338472 199338502 -82855162 + (CGG)n Simple_repeat Simple_repeat 2 31 0 211 342 34 17 chr1 199341129 199341246 -82852418 - MIR3 SINE MIR -54 154 36 1303 155 85 15 chr1 199343258 199343529 -82850135 + MER33 DNA MER1_type 10 299 -25 378 0 0 0 chr1 199343529 199343571 -82850093 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1174 129 0 0 chr1 199344146 199344340 -82849324 + AluSg/x SINE Alu 132 325 0 387 304 14 27 chr1 199344717 199344865 -82848799 + MIR SINE MIR 107 252 -10 316 309 99 69 chr1 199344875 199345458 -82848206 + L2 LINE L2 2294 2894 -420 333 227 17 109 chr1 199345754 199345873 -82847791 - L2 LINE L2 -15 3298 3191 720 261 107 13 chr1 199345925 199346159 -82847505 - MIR SINE MIR -1 261 6 207 293 0 0 chr1 199346255 199346296 -82847368 - L2 LINE L2 -218 3054 3014 229 193 0 53 chr1 199346847 199346904 -82846760 + L1ME3A LINE L1 6019 6072 -98 259 337 0 11 chr1 199346918 199347007 -82846657 + (CATA)n Simple_repeat Simple_repeat 2 89 0 330 286 67 25 chr1 199347105 199347224 -82846440 - MIR SINE MIR -21 241 118 258 273 104 65 chr1 199347331 199347485 -82846179 + MIR SINE MIR 29 188 -74 21 36 0 0 chr1 199347839 199347867 -82845797 + AT_rich Low_complexity Low_complexity 1 28 0 757 228 19 62 chr1 199347965 199348176 -82845488 - MIR SINE MIR -9 253 52 273 174 23 35 chr1 199349119 199349205 -82844459 + CT-rich Low_complexity Low_complexity 3 87 0 442 290 92 29 chr1 199349698 199349936 -82843728 + MIR SINE MIR 10 262 0 180 0 0 0 chr1 199349952 199349972 -82843692 + (TTG)n Simple_repeat Simple_repeat 2 21 0 * 249 108 0 0 chr1 199349970 199350007 -82843657 + (T)n Simple_repeat Simple_repeat 1 37 0 258 32 0 0 chr1 199350154 199350185 -82843479 + (T)n Simple_repeat Simple_repeat 1 31 0 542 247 184 0 chr1 199351912 199352070 -82841594 - MER5A DNA MER1_type 0 189 3 475 172 35 35 chr1 199352231 199352347 -82841317 - MER103 DNA DNA -50 116 1 981 268 8 0 chr1 199352584 199352823 -82840841 - MIR SINE MIR -5 257 17 258 195 11 126 chr1 199353289 199353376 -82840288 + MIR3 SINE MIR 87 163 -45 614 99 0 12 chr1 199353381 199353462 -82840202 - MADE1 DNA Mariner 0 80 1 320 227 0 92 chr1 199354749 199354912 -82838752 + L1MC5 LINE L1 7789 7936 -25 581 294 91 14 chr1 199354913 199355134 -82838530 + MIR SINE MIR 25 262 0 878 228 43 87 chr1 199355260 199355629 -82838035 - L2 LINE L2 -12 3301 2949 578 265 91 32 chr1 199357752 199357971 -82835693 + MIR SINE MIR 15 246 -16 2236 106 0 3 chr1 199358477 199358770 -82834894 - AluSg SINE Alu -18 292 1 305 304 12 117 chr1 199360858 199361029 -82832635 - MIR3 SINE MIR -29 179 27 231 36 0 0 chr1 199361780 199361808 -82831856 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 408 17 8 chr1 199361988 199362108 -82831556 - L2 LINE L2 -2 3270 3150 570 265 112 23 chr1 199362151 199362411 -82831253 + MARNA DNA Mariner 284 566 -20 303 254 30 15 chr1 199362571 199362638 -82831026 + MIR SINE MIR 48 115 -147 245 224 172 60 chr1 199362945 199363079 -82830585 + MIR SINE MIR 108 256 -6 274 350 77 21 chr1 199363214 199363357 -82830307 - MER5B DNA MER1_type 0 178 28 2407 99 0 0 chr1 199363357 199363661 -82830003 + AluSq SINE Alu 6 309 -4 488 287 16 0 chr1 199363661 199363783 -82829881 + MER5A DNA MER1_type 66 189 0 * 541 211 73 0 chr1 199363783 199363902 -82829762 - MIR SINE MIR -127 135 8 1292 182 103 57 chr1 199363929 199364067 -82829597 + MLT1B LTR MaLR 1 131 -259 2707 127 38 19 chr1 199364067 199364486 -82829178 - MSTA LTR MaLR -1 427 1 1292 182 103 57 chr1 199364486 199364716 -82828948 + MLT1B LTR MaLR 131 386 -4 191 222 0 0 chr1 199365469 199365514 -82828150 - L2 LINE L2 -1037 2277 2233 211 240 110 30 chr1 199365772 199365872 -82827792 - L2 LINE L2 -1304 2010 1903 274 358 36 22 chr1 199366513 199366650 -82827014 - L3b LINE CR1 -167 1416 1278 1030 293 107 33 chr1 199366814 199367022 -82826642 + L2 LINE L2 2467 2658 -655 2086 117 3 19 chr1 199367022 199367339 -82826325 + AluSq SINE Alu 1 312 -1 1030 293 107 33 chr1 199367339 199367827 -82825837 + L2 LINE L2 2658 3211 -102 21 71 0 0 chr1 199367867 199367909 -82825755 + AT_rich Low_complexity Low_complexity 1 42 0 2139 79 25 0 chr1 199367933 199368210 -82825454 + L1PB2 LINE L1 5868 6151 0 8543 24 0 1 chr1 199368706 199369712 -82823952 - L1P LINE L1 -2484 3662 2658 7125 36 0 1 chr1 199369712 199370508 -82823156 + L1PA4 LINE L1 5356 6155 0 22 0 0 0 chr1 199370576 199370598 -82823066 + AT_rich Low_complexity Low_complexity 1 22 0 320 362 40 7 chr1 199370684 199370833 -82822831 - L2 LINE L2 -1 3271 3118 337 239 83 73 chr1 199371049 199371158 -82822506 + MER5B DNA MER1_type 78 176 -2 653 273 100 28 chr1 199371220 199371579 -82822085 - L2 LINE L2 -964 2350 1966 792 297 79 0 chr1 199371696 199372077 -82821587 - L1ME4a LINE L1 0 6121 5711 1882 145 23 23 chr1 199372156 199372460 -82821204 - AluSq SINE Alu -9 304 1 2258 205 34 60 chr1 199372847 199373384 -82820280 + MLT1F LTR MaLR 1 523 -19 242 282 154 0 chr1 199373463 199373541 -82820123 - L1ME4a LINE L1 -422 5699 5610 437 307 133 18 chr1 199375014 199375239 -82818425 + MIR SINE MIR 4 254 -8 395 313 45 0 chr1 199376063 199376197 -82817467 + MER91C DNA MER1_type 1 140 0 192 77 0 0 chr1 199376231 199376257 -82817407 + (A)n Simple_repeat Simple_repeat 1 26 0 373 207 78 9 chr1 199376849 199376965 -82816699 - L1ME4a LINE L1 -4 6117 5994 483 184 19 19 chr1 199377567 199377670 -82815994 + MER3 DNA MER1_type 54 156 -53 1419 171 50 84 chr1 199377674 199378077 -82815587 + MER3 DNA MER1_type 2236 2624 0 252 239 42 28 chr1 199378308 199378379 -82815285 - L1MC4 LINE L1 -7 8035 7964 3084 209 61 88 chr1 199378380 199379083 -82814581 - L1MC4 LINE L1 -307 7735 7015 428 0 19 0 chr1 199379083 199379135 -82814529 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 3084 209 61 88 chr1 199379135 199379280 -82814384 - L1MC4 LINE L1 -1027 7015 6868 2454 78 0 0 chr1 199379280 199379576 -82814088 + AluY SINE Alu 1 296 -15 575 296 55 15 chr1 199379581 199379780 -82813884 - MER63A DNA MER1_type -3 207 1 3084 209 61 88 chr1 199379780 199379941 -82813723 - L1MC4 LINE L1 -1178 6864 6746 897 208 36 54 chr1 199380237 199380458 -82813206 - MER20 DNA MER1_type 0 219 3 2254 95 3 3 chr1 199381166 199381460 -82812204 + AluSq SINE Alu 1 294 -19 2464 198 12 12 chr1 199381796 199382286 -82811378 - L1MA7 LINE L1 -11 6484 5995 2183 197 119 6 chr1 199382286 199382815 -82810849 - L1MA7 LINE L1 -1511 4839 4251 * 3504 258 52 45 chr1 199382812 199385205 -82808459 - L1MA7 LINE L1 -3655 2695 602 1985 243 68 96 chr1 199385184 199385944 -82807720 - L1MA7 LINE L1 -5541 740 2 * 2269 161 33 24 chr1 199387263 199387685 -82805979 + MSTB LTR MaLR 1 426 0 461 259 49 14 chr1 199388165 199388308 -82805356 + MIR SINE MIR 89 236 -26 26 30 0 0 chr1 199388595 199388628 -82805036 + AT_rich Low_complexity Low_complexity 1 33 0 180 229 0 0 chr1 199389146 199389181 -82804483 + MIR SINE MIR 106 140 -68 2231 131 0 0 chr1 199389322 199389628 -82804036 - AluSx SINE Alu -6 306 1 322 219 83 0 chr1 199389630 199389726 -82803938 - MIR SINE MIR -35 227 124 230 357 10 10 chr1 199390423 199390521 -82803143 + L2 LINE L2 3161 3258 -14 234 238 143 40 chr1 199391475 199391601 -82802063 - MIR3 SINE MIR -4 204 66 1450 241 89 39 chr1 199393552 199393992 -82799672 - MLT1E LTR MaLR 0 593 163 707 188 23 0 chr1 199394113 199394241 -82799423 - MLT1E LTR MaLR -521 133 3 277 239 14 0 chr1 199394443 199394514 -82799150 + L2 LINE L2 3201 3272 0 22 35 0 0 chr1 199394692 199394721 -82798943 + AT_rich Low_complexity Low_complexity 1 29 0 342 216 65 43 chr1 199394824 199394963 -82798701 - L1 LINE L1 -1312 4834 4693 343 325 32 0 chr1 199395598 199395724 -82797940 - LTR16C LTR ERVL -359 132 3 235 258 151 0 chr1 199396193 199396286 -82797378 - MIR3 SINE MIR -21 187 81 682 271 87 14 chr1 199396485 199396703 -82796961 + MIR SINE MIR 1 234 -28 637 261 0 0 chr1 199398199 199398356 -82795308 - MIR SINE MIR -88 174 18 778 293 9 5 chr1 199400247 199400469 -82793195 + MIR SINE MIR 10 232 -30 318 273 58 32 chr1 199401190 199401344 -82792320 - MIR3 SINE MIR -27 181 24 502 261 153 0 chr1 199402108 199402265 -82791399 + MER5A DNA MER1_type 9 189 0 282 370 16 0 chr1 199403497 199403624 -82790040 - L2 LINE L2 -2 3270 3142 240 240 80 27 chr1 199404229 199404304 -82789360 - L2 LINE L2 -14 3299 3221 180 300 83 8 chr1 199405065 199405185 -82788479 - L2 LINE L2 -1 3312 3184 336 326 123 0 chr1 199405839 199406026 -82787638 - MIR SINE MIR -2 260 51 551 134 21 10 chr1 199407390 199407487 -82786177 + L1MA5 LINE L1 6201 6298 -2 439 340 61 28 chr1 199407851 199407992 -82785672 - L3 LINE CR1 -10 1567 1432 2482 72 0 0 chr1 199407992 199408285 -82785379 - AluY SINE Alu -16 295 3 439 340 61 28 chr1 199408285 199408469 -82785195 - L3 LINE CR1 -145 1432 1231 256 348 62 42 chr1 199409405 199409805 -82783859 + L2 LINE L2 2844 3251 -21 184 302 19 0 chr1 199409868 199409921 -82783743 + MIR SINE MIR 13 66 -196 369 264 83 21 chr1 199409930 199410074 -82783590 + MIR SINE MIR 36 188 -74 278 318 56 56 chr1 199410592 199410668 -82782996 + L3 LINE CR1 721 796 -781 1054 243 142 42 chr1 199410668 199411076 -82782588 - MLT1J2 LTR MaLR -1 449 1 278 318 56 56 chr1 199411076 199411194 -82782470 + L3 LINE CR1 795 915 -662 1075 151 0 29 chr1 199411497 199411669 -82781995 + AluSg/x SINE Alu 134 300 -12 624 288 6 40 chr1 199411770 199412033 -82781631 - MLT1H LTR MaLR -140 269 55 202 182 0 0 chr1 199412164 199412197 -82781467 + (ATGGTG)n Simple_repeat Simple_repeat 4 36 0 363 341 80 20 chr1 199412212 199412461 -82781203 + L3 LINE CR1 1033 1296 -281 260 280 90 0 chr1 199413324 199413424 -82780240 + MIR SINE MIR 32 140 -68 1288 166 39 9 chr1 199415189 199415418 -82778246 - MER46A DNA MER2_type 0 236 1 570 67 0 0 chr1 199415452 199415527 -82778137 + (TG)n Simple_repeat Simple_repeat 2 76 0 388 130 52 26 chr1 199417025 199417102 -82776562 - FLAM_A SINE Alu -8 125 47 764 144 0 8 chr1 199417105 199417223 -82776441 - FLAM_A SINE Alu -13 120 4 2161 104 0 0 chr1 199417334 199417641 -82776023 - AluSg SINE Alu 0 307 1 797 282 36 4 chr1 199417802 199418054 -82775610 + MIR SINE MIR 3 262 0 284 250 0 48 chr1 199418493 199418577 -82775087 + MIR SINE MIR 46 125 -137 247 374 11 0 chr1 199418613 199418704 -82774960 + MIR SINE MIR 25 116 -92 27 0 0 0 chr1 199418786 199418813 -82774851 + AT_rich Low_complexity Low_complexity 1 27 0 27 49 0 0 chr1 199419417 199419458 -82774206 + AT_rich Low_complexity Low_complexity 1 41 0 5941 154 46 1 chr1 199419458 199420852 -82772812 - L1MA6 LINE L1 0 6300 4846 24 0 0 0 chr1 199420852 199420876 -82772788 + AT_rich Low_complexity Low_complexity 1 24 0 4383 186 50 8 chr1 199421227 199421378 -82772286 + Charlie1 DNA MER1_type 1396 1539 -1222 315 104 0 0 chr1 199421378 199421426 -82772238 + (CA)n Simple_repeat Simple_repeat 2 49 0 4383 186 50 8 chr1 199421426 199422482 -82771182 + Charlie1 DNA MER1_type 1539 2745 -16 238 266 13 13 chr1 199422497 199422576 -82771088 - MIR3 SINE MIR -49 159 81 302 294 138 72 chr1 199424559 199425149 -82768515 - L2 LINE L2 -2 3311 2678 1104 265 122 15 chr1 199425370 199425519 -82768145 - L2 LINE L2 0 3313 3181 15594 121 17 21 chr1 199425519 199427946 -82765718 + Tigger1 DNA MER2_type 1 2418 0 1104 265 122 15 chr1 199427946 199428257 -82765407 - L2 LINE L2 -132 3181 2804 3598 291 172 28 chr1 199428295 199429248 -82764416 - L2 LINE L2 -674 2640 1826 2280 106 0 0 chr1 199429248 199429541 -82764123 + AluSc SINE Alu 1 293 -16 3598 291 172 28 chr1 199429541 199430754 -82762910 - L2 LINE L2 -1488 1826 162 568 307 55 25 chr1 199430841 199431043 -82762621 + L2 LINE L2 1061 1268 -2046 8008 81 19 5 chr1 199431279 199432386 -82761278 + L1P LINE L1 3943 5065 -1081 236 350 35 39 chr1 199432418 199432621 -82761043 + L2 LINE L2 2553 2754 -560 297 314 45 28 chr1 199432667 199432843 -82760821 + MIR3 SINE MIR 2 187 -66 2177 117 0 0 chr1 199432855 199433167 -82760497 + AluY SINE Alu 1 312 0 297 309 69 110 chr1 199433366 199433494 -82760170 + L2 LINE L2 2897 3029 -243 2409 77 0 3 chr1 199433494 199433806 -82759858 + AluY SINE Alu 1 311 0 297 309 69 110 chr1 199433806 199434069 -82759595 + L2 LINE L2 3029 3272 0 217 240 0 20 chr1 199438162 199438212 -82755452 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 292 271 0 0 chr1 199438229 199438299 -82755365 + MIR SINE MIR 81 150 -112 299 291 86 26 chr1 199438494 199438645 -82755019 + MIR SINE MIR 33 192 -70 342 293 52 17 chr1 199439429 199439545 -82754119 - L2 LINE L2 -20 3252 3133 190 280 27 27 chr1 199442284 199442359 -82751305 - MIR SINE MIR -74 134 60 429 235 29 0 chr1 199443706 199443808 -82749856 + L2 LINE L2 3208 3312 -1 290 316 26 8 chr1 199443889 199444006 -82749658 + MIR SINE MIR 31 149 -59 201 180 56 22 chr1 199444168 199444257 -82749407 + (TTATA)n Simple_repeat Simple_repeat 4 95 0 501 318 82 40 chr1 199446667 199447047 -82746617 - L2 LINE L2 0 3313 2918 201 74 0 0 chr1 199448729 199448756 -82744908 + (CA)n Simple_repeat Simple_repeat 1 27 0 219 259 17 0 chr1 199452255 199452313 -82741351 - L3 LINE CR1 0 1577 1519 2253 109 6 10 chr1 199452355 199452666 -82740998 + AluSg SINE Alu 1 310 0 2062 141 0 7 chr1 199452679 199452977 -82740687 + AluSx SINE Alu 2 297 -15 332 314 9 0 chr1 199453795 199453900 -82739764 + MIR3 SINE MIR 49 154 -54 540 0 0 0 chr1 199454200 199454260 -82739404 + (TTCC)n Simple_repeat Simple_repeat 2 61 0 600 144 27 0 chr1 199454799 199454910 -82738754 - MER5A DNA MER1_type -72 117 4 641 243 68 19 chr1 199455760 199455966 -82737698 + MIR SINE MIR 32 247 -15 228 214 0 0 chr1 199456012 199456068 -82737596 + GA-rich Low_complexity Low_complexity 5 60 0 4971 199 41 14 chr1 199456724 199458691 -82734973 - L1MB7 LINE L1 -1 6183 4160 873 329 21 24 chr1 199458994 199459849 -82733815 - HERV16 LTR ERVL -1567 4197 3278 2032 325 55 26 chr1 199459856 199460201 -82733463 - HERV16 LTR ERVL -1905 3091 2758 2056 181 34 13 chr1 199460201 199460587 -82733077 - MSTD LTR MaLR 0 396 3 2032 325 55 26 chr1 199460587 199461265 -82732399 - HERV16 LTR ERVL -2238 2758 2162 7139 227 38 9 chr1 199461265 199462529 -82731135 - L1P LINE L1 -2155 3991 2656 2183 69 0 0 chr1 199462529 199462815 -82730849 + AluY SINE Alu 34 311 0 7139 227 38 9 chr1 199462815 199463365 -82730299 - L1P LINE L1 -3490 2656 2124 5995 155 29 12 chr1 199463363 199465487 -82728177 + L1PA16 LINE L1 4000 6165 -1 * 2647 309 73 72 chr1 199465490 199467661 -82726003 - HERV16 LTR ERVL -2823 2173 2 786 296 77 31 chr1 199467711 199468062 -82725602 - LTR16A LTR ERVL -88 369 3 825 266 106 39 chr1 199468576 199468990 -82724674 + MLT1J2 LTR MaLR 9 450 0 1240 136 32 81 chr1 199470182 199470491 -82723173 + MER33 DNA MER1_type 26 319 -5 303 223 22 3 chr1 199470857 199470988 -82722676 - MER96 DNA MER1_type? 0 175 7 183 80 0 0 chr1 199472910 199472935 -82720729 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 212 83 0 28 chr1 199473712 199473748 -82719916 + (GAAA)n Simple_repeat Simple_repeat 1 35 0 186 171 0 0 chr1 199475139 199475180 -82718484 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 397 270 51 7 chr1 199475356 199475493 -82718171 + MER5A DNA MER1_type 37 179 -10 214 196 0 20 chr1 199475527 199475578 -82718086 + MIR3 SINE MIR 155 204 -4 354 339 40 0 chr1 199475899 199476023 -82717641 - MIR SINE MIR -87 175 47 429 218 16 73 chr1 199476369 199476413 -82717251 - MER103 DNA DNA -45 121 76 1684 220 64 31 chr1 199476413 199476899 -82716765 + MLT1D LTR MaLR 4 505 0 429 218 16 73 chr1 199476899 199476978 -82716686 - MER103 DNA DNA -90 76 5 197 259 0 19 chr1 199479679 199479733 -82713931 - L2 LINE L2 -5 3267 3215 3877 246 101 62 chr1 199480300 199481079 -82712585 + HAL1 LINE L1 11 758 -1749 805 246 26 52 chr1 199481079 199481347 -82712317 - MIR SINE MIR 0 262 2 3877 246 101 62 chr1 199481347 199482808 -82710856 + HAL1 LINE L1 758 2483 -24 1450 125 35 4 chr1 199482926 199483158 -82710506 + L1PA11 LINE L1 5915 6153 -21 665 323 51 41 chr1 199484162 199484412 -82709252 + L2 LINE L2 2895 3152 -161 1800 189 12 0 chr1 199484412 199484750 -82708914 - MER2 DNA MER2_type -1 343 2 665 323 51 41 chr1 199484750 199484914 -82708750 + L2 LINE L2 3152 3313 0 1803 167 10 3 chr1 199484951 199485251 -82708413 - AluJb SINE Alu -10 302 1 21 0 0 0 chr1 199485744 199485765 -82707899 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr1 199486222 199486248 -82707416 + (TG)n Simple_repeat Simple_repeat 2 27 0 5327 75 0 37 chr1 199486395 199487105 -82706559 + LTR12 LTR ERV1 1 684 -4 21157 93 55 12 chr1 199487109 199490118 -82703546 + HERV9 LTR ERV1 1 3139 -5260 6384 90 19 7 chr1 199490125 199490980 -82702684 + HERV9 LTR ERV1 4080 4944 -3455 2227 176 133 64 chr1 199490981 199491758 -82701906 + HERV9 LTR ERV1 840 1669 -5227 1195 96 0 0 chr1 199491758 199491914 -82701750 - AluSg/x SINE Alu 0 312 157 3917 103 4 0 chr1 199491936 199492469 -82701195 + HERV9 LTR ERV1 7865 8399 0 6163 76 57 31 chr1 199492469 199493274 -82700390 + LTR12 LTR ERV1 1 826 0 226 211 26 13 chr1 199493501 199493577 -82700087 + MER11A LTR ERVK 202 278 -988 338 194 28 9 chr1 199493615 199493723 -82699941 + (TA)n Simple_repeat Simple_repeat 2 111 0 388 290 171 0 chr1 199496094 199496270 -82697394 - MIR SINE MIR -1 261 56 198 0 0 0 chr1 199496490 199496512 -82697152 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 501 298 0 7 chr1 199496589 199496730 -82696934 + MLT2F LTR ERVL 1 140 -523 897 201 15 49 chr1 199496738 199496942 -82696722 + MLT1E3 LTR MaLR 51 247 -377 334 217 65 22 chr1 199496985 199497077 -82696587 + MLT2F LTR ERVL 194 289 -374 225 65 0 0 chr1 199497103 199497134 -82696530 + (CA)n Simple_repeat Simple_repeat 1 31 0 1913 181 25 53 chr1 199497365 199497763 -82695901 - MLT1B LTR MaLR -2 388 2 473 289 89 0 chr1 199499052 199499187 -82694477 + MIR3 SINE MIR 38 184 -24 211 303 51 16 chr1 199499205 199499386 -82694278 - MIR SINE MIR 0 262 2 400 289 104 25 chr1 199502590 199502791 -82690873 + L3b LINE CR1 1187 1403 -180 339 319 52 9 chr1 199502961 199503077 -82690587 - MER5A DNA MER1_type -5 184 64 366 300 5 0 chr1 199503466 199503566 -82690098 + MIR SINE MIR 45 147 -62 336 309 86 55 chr1 199504710 199505001 -82688663 + L2 LINE L2 2957 3256 -16 219 114 0 0 chr1 199505014 199505049 -82688615 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 2283 108 3 0 chr1 199505082 199505377 -82688287 + AluSp SINE Alu 3 298 -15 548 209 63 89 chr1 199506190 199506252 -82687412 + MER5B DNA MER1_type 1 63 -115 2332 84 0 10 chr1 199506252 199506562 -82687102 + AluY SINE Alu 5 311 0 548 209 63 89 chr1 199506562 199506657 -82687007 + MER5B DNA MER1_type 63 154 -24 181 294 0 73 chr1 199506813 199506881 -82686783 + L2 LINE L2 3204 3266 -6 226 306 32 0 chr1 199507010 199507072 -82686592 + L2 LINE L2 3207 3270 -2 252 315 0 56 chr1 199507225 199507333 -82686331 + GA-rich Low_complexity Low_complexity 3 104 0 1726 197 33 15 chr1 199510541 199510876 -82682788 - MER58B DNA MER1_type 0 341 1 955 208 87 19 chr1 199511489 199511824 -82681840 - MSTD LTR MaLR 0 396 1 258 221 44 29 chr1 199512030 199512098 -82681566 - MIR SINE MIR -102 160 92 225 276 61 41 chr1 199513419 199513517 -82680147 - L2 LINE L2 0 3313 3214 258 308 185 8 chr1 199513695 199513825 -82679839 - L2 LINE L2 -210 3062 2910 418 313 69 19 chr1 199514305 199514465 -82679199 + MIR3 SINE MIR 16 183 -25 1005 216 88 5 chr1 199514568 199514762 -82678902 + MER58C DNA MER1_type 4 213 -2 1267 233 37 14 chr1 199514849 199515290 -82678374 + MLT1H1 LTR MaLR 4 551 -4 262 301 117 0 chr1 199515633 199515736 -82677928 + L2 LINE L2 3153 3267 -5 451 296 166 5 chr1 199515747 199515970 -82677694 - MIR SINE MIR -1 261 3 199 204 68 0 chr1 199515991 199516035 -82677629 - L2 LINE L2 -89 3183 3137 3493 177 41 23 chr1 199516125 199516231 -82677433 - MLT1E3 LTR MaLR 0 624 521 2341 107 0 0 chr1 199516231 199516529 -82677135 + AluSg SINE Alu 3 300 -10 3493 177 41 23 chr1 199516529 199517033 -82676631 - MLT1E3 LTR MaLR -103 521 3 1699 158 57 92 chr1 199518051 199518455 -82675209 - MLT1B LTR MaLR 0 390 1 357 204 29 11 chr1 199518706 199519164 -82674500 + (TG)n Simple_repeat Simple_repeat 1 466 0 556 292 10 38 chr1 199519669 199519878 -82673786 + L2 LINE L2 3111 3313 0 194 350 93 21 chr1 199519859 199519956 -82673708 - L2 LINE L2 0 3313 3210 * 387 0 0 0 chr1 199521168 199521211 -82672453 + (CA)n Simple_repeat Simple_repeat 2 44 0 235 326 0 12 chr1 199522120 199522206 -82671458 - Charlie8 DNA MER1_type -2 2415 2331 342 274 65 16 chr1 199522576 199522700 -82670964 - MIR3 SINE MIR -49 159 30 1224 230 92 49 chr1 199522896 199523344 -82670320 + MLT1C LTR MaLR 1 467 0 192 286 0 0 chr1 199523538 199523580 -82670084 - MIR SINE MIR -171 91 50 191 273 0 22 chr1 199524161 199524279 -82669385 + MIR SINE MIR 104 260 -2 262 128 0 0 chr1 199525702 199525741 -82667923 - MLT2D LTR ERVL 0 414 376 526 199 13 17 chr1 199525750 199525987 -82667677 + GA-rich Low_complexity Low_complexity 1 235 0 2764 170 5 7 chr1 199525995 199526442 -82667222 - MLT2B3 LTR ERVL -55 499 54 30 27 0 0 chr1 199526688 199526725 -82666939 + AT_rich Low_complexity Low_complexity 1 37 0 263 365 47 0 chr1 199528184 199528269 -82665395 + MIR SINE MIR 36 124 -84 467 222 83 42 chr1 199529220 199529364 -82664300 + MIR SINE MIR 96 245 -17 22 0 0 0 chr1 199530885 199530907 -82662757 + AT_rich Low_complexity Low_complexity 1 22 0 358 342 25 15 chr1 199531211 199531407 -82662257 + L3 LINE CR1 1092 1289 -288 730 280 48 36 chr1 199531545 199531645 -82662019 - L2 LINE L2 -9 3304 3207 375 73 0 0 chr1 199531645 199531700 -82661964 + (TG)n Simple_repeat Simple_repeat 1 55 0 730 280 48 36 chr1 199531700 199532032 -82661632 - L2 LINE L2 -106 3207 2593 228 347 74 0 chr1 199532091 199532212 -82661452 + L3 LINE CR1 1447 1576 -1 314 304 27 18 chr1 199532317 199532429 -82661235 + L2 LINE L2 3201 3313 0 347 277 139 22 chr1 199534668 199534805 -82658859 + L2 LINE L2 3161 3313 0 441 270 81 20 chr1 199534951 199535099 -82658565 + MIR SINE MIR 50 206 -56 8697 169 16 10 chr1 199535675 199537283 -82656381 - L1P LINE L1 -1280 4866 3249 6369 100 23 0 chr1 199537290 199538584 -82655080 + L1PA14 LINE L1 4824 6148 -13 257 266 53 53 chr1 199538680 199538774 -82654890 + L2 LINE L2 3171 3264 -8 471 35 0 0 chr1 199539709 199539766 -82653898 + (CA)n Simple_repeat Simple_repeat 1 57 0 233 307 148 74 chr1 199540109 199540392 -82653272 - L2 LINE L2 0 3272 2969 200 326 68 88 chr1 199540423 199540570 -82653094 + L2 LINE L2 3118 3261 -11 2122 115 27 56 chr1 199541365 199541740 -82651924 - THE1B LTR MaLR 0 364 1 11597 92 23 6 chr1 199541743 199543292 -82650372 - THE1B-int LTR MaLR -5 1575 1 1900 154 21 56 chr1 199543292 199543669 -82649995 - THE1B LTR MaLR 0 364 1 3237 68 0 2 chr1 199544770 199545168 -82648496 + MLT2A1 LTR ERVL 3 399 -45 316 70 18 15 chr1 199545204 199545221 -82648443 + MLT2A1 LTR ERVL 399 414 -30 270 0 0 0 chr1 199545221 199545251 -82648413 + (TG)n Simple_repeat Simple_repeat 2 31 0 316 70 18 15 chr1 199545251 199545295 -82648369 + MLT2A1 LTR ERVL 414 444 0 25652 161 16 17 chr1 199545921 199552280 -82641384 - L1PA10 LINE L1 -1 6482 3 2235 102 0 14 chr1 199553846 199554139 -82639525 + AluSx SINE Alu 1 289 -23 610 185 17 59 chr1 199554176 199554295 -82639369 - FLAM_C SINE Alu -18 115 2 2977 119 12 32 chr1 199554495 199555001 -82638663 - L1MA4 LINE L1 -54 6246 5751 453 118 0 0 chr1 199555001 199555075 -82638589 + L1MA3 LINE L1 6230 6305 0 1847 157 11 3 chr1 199555163 199555473 -82638191 - AluSq SINE Alu 0 313 1 271 292 14 0 chr1 199556234 199556306 -82637358 + (TATG)n Simple_repeat Simple_repeat 3 75 0 335 216 206 30 chr1 199556375 199556426 -82637238 - L1ME4a LINE L1 -253 5868 5827 3922 169 23 46 chr1 199556426 199557207 -82636457 - L1MB5 LINE L1 0 6174 5412 335 216 206 30 chr1 199557207 199557354 -82636310 - L1ME4a LINE L1 -294 5827 5635 192 345 36 0 chr1 199557386 199557441 -82636223 - MIR SINE MIR -130 78 22 264 211 53 0 chr1 199558215 199558272 -82635392 - L2 LINE L2 0 3313 3254 189 0 0 0 chr1 199558273 199558294 -82635370 + (A)n Simple_repeat Simple_repeat 1 21 0 408 269 138 38 chr1 199558725 199558885 -82634779 - MER5B DNA MER1_type -2 176 1 486 263 109 6 chr1 199559757 199559932 -82633732 - MIR SINE MIR -49 213 21 286 311 44 37 chr1 199561418 199561553 -82632111 - L2 LINE L2 -10 3303 3168 552 321 118 25 chr1 199561921 199562329 -82631335 - L2 LINE L2 -626 2688 2243 611 256 46 99 chr1 199562646 199562908 -82630756 + L3 LINE CR1 1121 1368 -209 * 1470 297 110 44 chr1 199562891 199564134 -82629530 - L2 LINE L2 -1 3312 1985 197 319 35 53 chr1 199564794 199564907 -82628757 + L3 LINE CR1 1457 1567 -10 601 37 104 0 chr1 199566095 199566258 -82627406 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 0 0 0 chr1 199566258 199566284 -82627380 + AT_rich Low_complexity Low_complexity 1 26 0 841 0 63 34 chr1 199566284 199566459 -82627205 + (TA)n Simple_repeat Simple_repeat 1 180 0 2368 102 0 0 chr1 199567363 199567667 -82625997 - AluSg SINE Alu -6 304 1 43600 34 21 1 chr1 199567934 199573958 -82619706 - L1PA3 LINE L1 0 6155 6 1638 310 70 62 chr1 199573970 199575120 -82618544 + L2 LINE L2 1553 2711 -603 208 231 48 19 chr1 199575162 199575266 -82618398 + (TA)n Simple_repeat Simple_repeat 2 108 0 718 272 192 11 chr1 199575311 199575660 -82618004 + L2 LINE L2 2853 3264 -49 195 42 0 0 chr1 199575743 199575767 -82617897 + (T)n Simple_repeat Simple_repeat 1 24 0 4669 8 0 0 chr1 199575774 199576267 -82617397 - L1PA2 LINE L1 0 6155 5663 5419 58 0 12 chr1 199576338 199576990 -82616674 + L1PA8 LINE L1 5526 6169 -3 2024 279 60 18 chr1 199577568 199578255 -82615409 - L2 LINE L2 -982 2332 1617 258 368 78 25 chr1 199579292 199579496 -82614168 + L2 LINE L2 2832 3046 -226 483 245 145 46 chr1 199579787 199580028 -82613636 + MLT1L LTR MaLR 351 615 0 194 324 95 14 chr1 199580109 199580183 -82613481 + L2 LINE L2 3203 3282 -31 402 298 111 18 chr1 199580465 199580636 -82613028 + MIR SINE MIR 40 226 -36 331 287 87 9 chr1 199580998 199581113 -82612551 - MIR SINE MIR -108 154 31 208 125 0 50 chr1 199581705 199581745 -82611919 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 191 291 63 13 chr1 199581966 199582045 -82611619 + L2 LINE L2 1551 1633 -1681 2142 108 7 3 chr1 199582064 199582350 -82611314 + AluSx SINE Alu 1 287 -25 24 0 0 0 chr1 199582359 199582383 -82611281 + AT_rich Low_complexity Low_complexity 1 24 0 409 242 6 28 chr1 199582544 199582726 -82610938 + (TA)n Simple_repeat Simple_repeat 1 178 0 258 331 121 6 chr1 199582819 199582976 -82610688 - HAL1 LINE L1 -1801 706 532 2324 167 17 0 chr1 199583115 199583474 -82610190 + MLT1A1 LTR MaLR 1 365 0 610 231 141 69 chr1 199583507 199583840 -82609824 + MLT1H LTR MaLR 53 409 -140 324 249 21 143 chr1 199584017 199584206 -82609458 - HAL1 LINE L1 -2320 187 22 629 296 37 37 chr1 199586446 199586689 -82606975 + L2 LINE L2 2130 2372 -942 297 333 29 58 chr1 199586689 199586863 -82606801 + L2 LINE L2 2568 2736 -578 396 357 9 0 chr1 199587079 199587191 -82606473 + L2 LINE L2 3155 3267 -5 519 310 57 19 chr1 199588564 199588722 -82604942 - MER91A DNA MER1_type -32 164 1 207 125 0 0 chr1 199589338 199589378 -82604286 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 267 278 102 28 chr1 199589487 199589595 -82604069 + L2 LINE L2 3191 3306 -7 237 65 0 0 chr1 199589916 199589947 -82603717 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 501 259 47 31 chr1 199590119 199590312 -82603352 - MLT1H LTR MaLR -10 539 344 1554 225 113 31 chr1 199590758 199591070 -82602594 - LTR40a LTR ERVL -4 515 149 2113 126 0 0 chr1 199591070 199591371 -82602293 + AluY SINE Alu 2 302 -9 1554 225 113 31 chr1 199591371 199591534 -82602130 - LTR40a LTR ERVL -370 149 1 206 263 53 35 chr1 199591725 199591782 -82601882 + MIR SINE MIR 91 148 -60 228 289 178 0 chr1 199591804 199591894 -82601770 + LTR16A1 LTR ERVL 27 132 -325 611 188 206 0 chr1 199591947 199592112 -82601552 + LTR16A1 LTR ERVL 257 455 -2 204 179 0 0 chr1 199592456 199592495 -82601169 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 261 75 0 0 chr1 199592496 199592536 -82601128 + (GA)n Simple_repeat Simple_repeat 1 40 0 261 57 0 0 chr1 199594516 199594551 -82599113 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 448 289 31 55 chr1 199594581 199594923 -82598741 + L2 LINE L2 2301 2714 -600 277 339 115 26 chr1 199596151 199596343 -82597321 + L3b LINE CR1 1366 1574 -9 243 0 0 0 chr1 199596408 199596435 -82597229 + (CA)n Simple_repeat Simple_repeat 2 28 0 297 317 8 0 chr1 199597651 199597774 -82595890 + L1MC4a LINE L1 5788 5911 -1897 197 302 173 14 chr1 199599944 199600083 -82593581 - MIR3 SINE MIR -15 193 33 207 297 68 51 chr1 199600246 199600364 -82593300 - MIR SINE MIR -62 200 81 340 230 212 18 chr1 199602218 199602331 -82591333 + MIR SINE MIR 118 252 -10 243 270 0 32 chr1 199603038 199603101 -82590563 - L2 LINE L2 -3 3269 3209 212 361 131 11 chr1 199603854 199604037 -82589627 + MIR SINE MIR 13 217 -45 383 290 107 15 chr1 199604232 199604363 -82589301 - MIR SINE MIR -88 174 32 1987 127 33 16 chr1 199604910 199605217 -82588447 - AluSx SINE Alu 0 312 1 325 280 112 0 chr1 199605270 199605377 -82588287 + L2 LINE L2 3187 3305 -8 497 292 87 0 chr1 199605478 199605639 -82588025 - MIR SINE MIR -11 251 77 799 289 32 20 chr1 199605775 199606028 -82587636 - MIR SINE MIR 0 262 7 204 40 0 0 chr1 199606311 199606336 -82587328 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 296 326 11 21 chr1 199607442 199607537 -82586127 + MIR3 SINE MIR 63 156 -52 379 109 0 16 chr1 199607798 199607862 -82585802 - MADE1 DNA Mariner -17 63 1 22 0 0 0 chr1 199607979 199608001 -82585663 + AT_rich Low_complexity Low_complexity 1 22 0 476 259 142 28 chr1 199608750 199608962 -82584702 - L2 LINE L2 0 3313 3078 364 309 61 44 chr1 199609267 199609448 -82584216 + MIR SINE MIR 28 211 -51 396 198 12 117 chr1 199610439 199610601 -82583063 - MER104 DNA Tc2 -35 145 1 374 299 30 8 chr1 199611043 199611177 -82582487 - L3b LINE CR1 -318 1265 1129 189 281 188 0 chr1 199611270 199611366 -82582298 + L2 LINE L2 3200 3313 0 240 222 0 0 chr1 199612347 199612401 -82581263 + (TA)n Simple_repeat Simple_repeat 1 54 0 256 289 0 0 chr1 199612800 199612876 -82580788 + (TG)n Simple_repeat Simple_repeat 1 76 0 227 360 9 18 chr1 199613529 199613640 -82580024 - MIR SINE MIR -108 154 45 293 323 0 16 chr1 199613740 199613867 -82579797 + MIR SINE MIR 110 234 -28 346 280 35 14 chr1 199614413 199614556 -82579108 - MLT1H LTR MaLR -5 544 399 470 183 19 19 chr1 199614922 199615026 -82578638 - MLT1H LTR MaLR -438 111 8 671 312 99 53 chr1 199615803 199616472 -82577192 + L2 LINE L2 2563 3272 0 211 286 42 59 chr1 199616828 199616947 -82576717 - MIR SINE MIR -74 188 72 2644 26 0 6 chr1 199616981 199617294 -82576370 - AluY SINE Alu 0 311 1 389 238 0 0 chr1 199618218 199618298 -82575366 - LTR16A LTR ERVL 0 450 371 293 200 0 0 chr1 199618298 199618358 -82575306 + L1M4 LINE L1 5584 5643 -541 642 301 32 29 chr1 199618384 199618663 -82575001 - LTR16A LTR ERVL -99 351 72 289 208 0 4 chr1 199618846 199618956 -82574708 + MER96 DNA MER1_type? 1 151 -24 272 225 42 0 chr1 199618970 199619041 -82574623 - L1MB7 LINE L1 -11 6173 6100 1700 195 61 10 chr1 199619059 199619731 -82573933 - L1MB7 LINE L1 -493 5685 4976 * 3366 243 37 24 chr1 199619723 199620180 -82573484 - L1MB7 LINE L1 -2481 3665 3216 5670 119 7 0 chr1 199620180 199621968 -82571696 - L1PA15 LINE L1 -1 6164 4357 3366 243 37 24 chr1 199621968 199622727 -82570937 - L1MB7 LINE L1 -2930 3216 2433 487 211 147 0 chr1 199622781 199622890 -82570774 + MER96 DNA MER1_type? 49 173 -2 3384 324 54 20 chr1 199623605 199626919 -82566745 - HERV16 LTR ERVL -1242 4412 913 2374 134 6 16 chr1 199626919 199627285 -82566379 + THE1B LTR MaLR 3 364 0 3384 324 54 20 chr1 199627285 199627909 -82565755 - HERV16 LTR ERVL -4741 913 311 924 224 14 31 chr1 199627918 199628141 -82565523 - MER58A DNA MER1_type 0 224 6 985 256 67 24 chr1 199628147 199628444 -82565220 - HERV16 LTR ERVL -4686 310 1 622 286 91 7 chr1 199628445 199628816 -82564848 - LTR16A LTR ERVL -8 442 1 249 281 0 0 chr1 199629700 199629796 -82563868 + GA-rich Low_complexity Low_complexity 3 98 0 1678 155 24 53 chr1 199629919 199630294 -82563370 - THE1B LTR MaLR 0 364 1 187 237 0 0 chr1 199631470 199631508 -82562156 - MIR SINE MIR -13 249 212 586 305 118 5 chr1 199631542 199631729 -82561935 + MIR SINE MIR 55 262 0 396 259 10 12 chr1 199631762 199631870 -82561794 - MIR SINE MIR -65 143 37 389 324 10 0 chr1 199632224 199632326 -82561338 - L2 LINE L2 0 3313 3211 2647 91 0 11 chr1 199632634 199633008 -82560656 - THE1C LTR MaLR 0 375 6 807 258 63 0 chr1 199633270 199633460 -82560204 - MIR SINE MIR -50 212 11 406 331 39 17 chr1 199634930 199635108 -82558556 - MIR SINE MIR -49 213 32 214 370 74 39 chr1 199635456 199635713 -82557951 - L2 LINE L2 -10 3262 2997 2123 125 10 7 chr1 199636023 199636327 -82557337 + AluSx SINE Alu 1 305 -7 827 224 36 0 chr1 199636950 199637142 -82556522 + MER63A DNA MER1_type 7 205 -5 549 222 18 104 chr1 199638590 199638653 -82555011 + MER105 DNA DNA 1 68 -136 602 243 211 0 chr1 199638653 199638838 -82554826 - MER58A DNA MER1_type 0 224 1 549 222 18 104 chr1 199638838 199638995 -82554669 + MER105 DNA DNA 68 202 -2 368 241 28 19 chr1 199640289 199640397 -82553267 + MER117 DNA MER1_type 4 112 -85 206 317 156 16 chr1 199640485 199640671 -82552993 + MIR SINE MIR 20 231 -31 274 371 69 49 chr1 199642191 199642541 -82551123 - L2 LINE L2 -50 3222 2866 272 241 17 0 chr1 199642744 199642802 -82550862 - L2 LINE L2 -5 3308 3250 460 327 148 5 chr1 199642833 199643056 -82550608 + MIR SINE MIR 7 261 -1 450 169 0 0 chr1 199645182 199645271 -82548393 + CT-rich Low_complexity Low_complexity 2 90 0 213 220 220 28 chr1 199647975 199648084 -82545580 - L2 LINE L2 -26 3287 3158 432 295 45 0 chr1 199649542 199649654 -82544010 - L2 LINE L2 0 3313 3197 1784 175 16 22 chr1 199650076 199650390 -82543274 + AluJo SINE Alu 1 312 0 2286 110 0 0 chr1 199651180 199651481 -82542183 + AluSq SINE Alu 1 301 -12 229 337 98 41 chr1 199651661 199651779 -82541885 + L2 LINE L2 1809 1919 -1395 1183 140 25 34 chr1 199651779 199652014 -82541650 - L1MA5A LINE L1 -5 6292 6060 229 337 98 41 chr1 199652014 199652161 -82541503 + L2 LINE L2 1919 2056 -1258 1874 169 0 3 chr1 199652161 199652462 -82541202 - AluSx SINE Alu -7 305 6 229 337 98 41 chr1 199652462 199652563 -82541101 + L2 LINE L2 2056 2197 -1117 303 350 107 47 chr1 199655432 199655971 -82537693 - L2 LINE L2 -4 3268 2712 368 213 0 0 chr1 199656154 199656229 -82537435 - MER116 DNA Mariner -5 75 1 333 47 0 0 chr1 199656857 199656900 -82536764 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr1 199657129 199657158 -82536506 + (CA)n Simple_repeat Simple_repeat 2 30 0 614 233 291 11 chr1 199657777 199658163 -82535501 + MLT1H LTR MaLR 12 547 -2 213 39 0 0 chr1 199658309 199658335 -82535329 + (TA)n Simple_repeat Simple_repeat 2 27 0 7398 41 2 4 chr1 199658335 199659733 -82533931 - L1PA5 LINE L1 -7 6147 4703 26 50 0 0 chr1 199659929 199659969 -82533695 + AT_rich Low_complexity Low_complexity 1 40 0 1020 283 116 48 chr1 199660295 199660950 -82532714 + L1ME LINE L1 3808 4417 -1729 252 0 0 0 chr1 199660950 199660978 -82532686 + (CA)n Simple_repeat Simple_repeat 2 29 0 1020 283 116 48 chr1 199660978 199661698 -82531966 + L1ME LINE L1 4417 5276 -870 396 320 153 28 chr1 199661711 199662070 -82531594 + L1ME LINE L1 5294 5701 -469 1076 326 30 8 chr1 199662081 199662480 -82531184 + L1MA6 LINE L1 305 712 -5537 3189 250 102 16 chr1 199662969 199664419 -82529245 + L1MA6 LINE L1 539 2101 -4101 11602 170 52 12 chr1 199664446 199668072 -82525592 + L1MA6 LINE L1 2737 6482 0 254 236 91 18 chr1 199668121 199668231 -82525433 + L1ME LINE L1 5739 5856 -314 402 225 0 0 chr1 199668231 199668342 -82525322 + (TA)n Simple_repeat Simple_repeat 2 112 0 581 246 8 0 chr1 199668370 199668500 -82525164 - MIR SINE MIR -34 228 98 234 174 0 0 chr1 199668789 199668835 -82524829 + (CATA)n Simple_repeat Simple_repeat 3 48 0 29 47 0 0 chr1 199668858 199668901 -82524763 + AT_rich Low_complexity Low_complexity 1 43 0 3195 240 94 40 chr1 199669357 199671316 -82522348 + L1MCb LINE L1 4 2242 -4322 186 71 0 0 chr1 199671316 199671344 -82522320 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 3195 240 94 40 chr1 199671344 199672809 -82520855 + L1MCb LINE L1 2242 3626 -2938 1082 277 56 97 chr1 199672812 199673418 -82520246 - MLT1D-int LTR MaLR -130 1241 661 2618 209 15 30 chr1 199673462 199674131 -82519533 - MLT1D-int LTR MaLR -712 659 1 821 194 37 57 chr1 199674131 199674573 -82519091 - MLT1D LTR MaLR 0 505 1 291 54 0 0 chr1 199674582 199674619 -82519045 + (CA)n Simple_repeat Simple_repeat 2 38 0 1173 169 76 0 chr1 199674619 199674856 -82518808 + L1MC3 LINE L1 7466 7720 -65 297 260 83 10 chr1 199675371 199675467 -82518197 + L2 LINE L2 2981 3083 -189 193 291 68 68 chr1 199675605 199675708 -82517956 + L2 LINE L2 3169 3271 -1 215 246 35 0 chr1 199675708 199675765 -82517899 + GA-rich Low_complexity Low_complexity 2 60 0 257 200 0 0 chr1 199675787 199675847 -82517817 - MLT-int LTR MaLR -1405 330 271 185 65 32 0 chr1 199676499 199676530 -82517134 + (TC)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr1 199676530 199676551 -82517113 + (CA)n Simple_repeat Simple_repeat 1 21 0 4625 85 10 1 chr1 199676641 199677335 -82516329 - L1PA8 LINE L1 -772 5374 4675 6234 60 5 0 chr1 199677335 199678125 -82515539 + L1PA8 LINE L1 5379 6172 0 449 361 12 0 chr1 199680258 199680427 -82513237 + L2 LINE L2 2647 2817 -497 209 202 96 87 chr1 199680478 199680582 -82513082 - MIR3 SINE MIR -102 106 2 415 302 23 39 chr1 199681808 199681937 -82511727 + MIR SINE MIR 1 127 -135 975 362 96 18 chr1 199681970 199682793 -82510871 + L2 LINE L2 2091 2980 -292 537 372 53 11 chr1 199682893 199683081 -82510583 + MER91A DNA MER1_type 1 196 0 479 305 71 0 chr1 199683184 199683325 -82510339 + L2 LINE L2 3121 3271 -1 414 271 32 45 chr1 199683807 199683905 -82509759 - MIR SINE MIR -1 261 164 446 175 0 0 chr1 199683905 199683985 -82509679 + MER116 DNA Mariner 1 80 0 414 271 32 45 chr1 199683985 199684041 -82509623 - MIR SINE MIR -98 164 109 422 309 48 8 chr1 199684608 199684734 -82508930 - L2 LINE L2 -9 3263 3133 372 291 189 0 chr1 199684887 199685035 -82508629 + MIR SINE MIR 74 249 -13 191 333 119 30 chr1 199685611 199685779 -82507885 + MIR3 SINE MIR 4 186 -22 288 91 0 0 chr1 199685793 199685837 -82507827 + (CTATA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr1 199685845 199685870 -82507794 + AT_rich Low_complexity Low_complexity 1 25 0 206 206 31 31 chr1 199685938 199686035 -82507629 + (TTA)n Simple_repeat Simple_repeat 1 97 0 511 246 39 0 chr1 199686055 199686185 -82507479 - MIR SINE MIR -22 240 106 206 379 73 17 chr1 199686240 199686417 -82507247 - L2 LINE L2 -159 3113 2927 1398 142 10 0 chr1 199686451 199686656 -82507008 + AluSg/x SINE Alu 93 299 -13 746 342 125 32 chr1 199686892 199687666 -82505998 - L2 LINE L2 -666 2648 1803 1021 305 77 5 chr1 199687951 199688393 -82505271 + L2 LINE L2 2559 3029 -284 312 19 57 19 chr1 199688393 199688446 -82505218 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 251 272 237 18 chr1 199688491 199688605 -82505059 + L2 LINE L2 3173 3311 -2 189 419 65 0 chr1 199688694 199688818 -82504846 - L2 LINE L2 -2 3270 3139 189 171 0 0 chr1 199689934 199689969 -82503695 - L2 LINE L2 0 3272 3238 740 299 77 26 chr1 199690588 199690899 -82502765 - MLT1J2 LTR MaLR -45 405 79 377 286 90 8 chr1 199691456 199691589 -82502075 - MER20B DNA MER1_type -606 177 34 193 264 44 77 chr1 199693083 199693174 -82500490 - L2 LINE L2 -3 3269 3182 925 264 100 37 chr1 199693839 199694240 -82499424 + L2 LINE L2 2888 3313 0 213 221 12 23 chr1 199694439 199694525 -82499139 + GA-rich Low_complexity Low_complexity 2 86 0 3590 245 57 85 chr1 199696139 199697031 -82496633 + L1ME LINE L1 3109 4025 -2121 1350 168 56 7 chr1 199697031 199697335 -82496329 - L1MA9 LINE L1 0 6312 5994 3590 245 57 85 chr1 199697335 199697641 -82496023 + L1ME LINE L1 4025 4338 -1808 1857 176 0 0 chr1 199697641 199697925 -82495739 - AluSx SINE Alu -26 286 3 3590 245 57 85 chr1 199697925 199698987 -82494677 + L1ME LINE L1 4338 5305 -841 287 333 0 0 chr1 199699166 199699232 -82494432 + L1PA15 LINE L1 1202 1267 -5520 284 0 28 0 chr1 199699232 199699268 -82494396 + (CTG)n Simple_repeat Simple_repeat 2 38 0 2530 197 43 12 chr1 199699285 199699778 -82493886 + L1PA15 LINE L1 1317 1824 -4963 1970 177 120 5 chr1 199699778 199700162 -82493502 - MSTA LTR MaLR 0 428 1 7977 159 64 33 chr1 199700167 199701693 -82491971 - MSTA-int LTR MaLR -6 1574 1 2060 147 132 5 chr1 199701693 199702073 -82491591 - MSTA LTR MaLR 0 428 1 17013 196 28 13 chr1 199702073 199702183 -82491481 + L1PA15 LINE L1 1839 1946 -4870 2112 147 0 3 chr1 199702183 199702495 -82491169 + AluSx SINE Alu 1 311 -1 17013 196 28 13 chr1 199702495 199703955 -82489709 + L1PA15 LINE L1 1946 3383 -3433 2468 84 0 0 chr1 199703955 199704265 -82489399 + AluY SINE Alu 1 310 -1 17013 196 28 13 chr1 199704265 199707580 -82486084 + L1PA15 LINE L1 3383 6809 -7 6170 167 50 3 chr1 199707588 199709604 -82484060 + L1PA13 LINE L1 4117 6160 -3 26 0 0 0 chr1 199709617 199709643 -82484021 + AT_rich Low_complexity Low_complexity 1 26 0 825 240 112 9 chr1 199709654 199709992 -82483672 + L1ME LINE L1 5295 5667 -497 653 315 91 30 chr1 199710417 199710953 -82482711 - HAL1 LINE L1 -1875 632 64 1069 125 42 12 chr1 199711038 199711206 -82482458 - AluSg/x SINE Alu -10 302 130 803 317 58 61 chr1 199711239 199712015 -82481649 - L1MEd LINE L1 -5102 1017 244 366 352 118 20 chr1 199712019 199712366 -82481298 + L1MEc LINE L1 38 418 -5978 499 302 19 33 chr1 199712593 199712805 -82480859 - MER58C DNA MER1_type 0 215 7 3153 253 65 31 chr1 199712846 199713844 -82479820 + L1M2 LINE L1 972 1935 -4447 1160 226 37 76 chr1 199713844 199714224 -82479440 + MLT1A1 LTR MaLR 1 365 0 3153 253 65 31 chr1 199714224 199715703 -82477961 + L1M2 LINE L1 1935 3380 -3002 266 0 29 0 chr1 199715703 199715737 -82477927 + (AAATG)n Simple_repeat Simple_repeat 2 36 0 3306 198 14 9 chr1 199715762 199716495 -82477169 + L1M2 LINE L1 3556 4291 -2091 1077 242 86 19 chr1 199716487 199716980 -82476684 - L1M4 LINE L1 -3594 2788 2329 * 491 0 0 17 chr1 199716980 199717040 -82476624 + (TA)n Simple_repeat Simple_repeat 1 59 0 2237 99 0 31 chr1 199717045 199717368 -82476296 - AluSq SINE Alu 0 313 1 1077 242 86 19 chr1 199717368 199717490 -82476174 - L1M4 LINE L1 -4056 2326 2121 1004 194 159 50 chr1 199717567 199717622 -82476042 + L1MC4 LINE L1 6872 6920 -1122 2251 105 3 0 chr1 199717622 199717927 -82475737 + AluSx SINE Alu 1 306 -6 1004 194 159 50 chr1 199717927 199718273 -82475391 + L1MC4 LINE L1 6920 7317 -725 5284 167 42 1 chr1 199718275 199719842 -82473822 - L1MA4 LINE L1 -7 6293 4672 1907 252 55 33 chr1 199719855 199719896 -82473768 + L1MC4 LINE L1 7329 7368 -674 568 63 13 0 chr1 199719896 199719975 -82473689 + MADE1 DNA Mariner 1 80 0 1907 252 55 33 chr1 199719975 199720628 -82473036 + L1MC4 LINE L1 7368 8038 -4 2655 238 19 10 chr1 199720641 199722210 -82471454 + L1MEc LINE L1 50 1742 -4543 1472 238 81 155 chr1 199722207 199723039 -82470625 - MLT-int LTR MaLR -201 1534 765 * 1784 211 26 3 chr1 199723039 199723427 -82470237 - MSTD-int LTR MaLR -1338 397 1 1604 174 126 14 chr1 199723427 199723783 -82469881 - MSTD LTR MaLR 0 396 1 1480 130 31 31 chr1 199723783 199723842 -82469822 + L1M2 LINE L1 5467 5525 -766 1748 209 58 17 chr1 199723842 199724253 -82469411 + MSTC LTR MaLR 1 428 0 1480 130 31 31 chr1 199724253 199724454 -82469210 + L1M2 LINE L1 5524 5727 -564 219 339 98 51 chr1 199726389 199726725 -82466939 + L2 LINE L2 2610 2961 -353 426 65 0 0 chr1 199726997 199727059 -82466605 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 997 239 45 75 chr1 199727085 199727486 -82466178 + MLT1B LTR MaLR 2 390 0 596 209 0 0 chr1 199727486 199727601 -82466063 + MLT1B-int LTR MaLR 1 115 -1256 * 2154 202 4 48 chr1 199727596 199728097 -82465567 + MLT1B-int LTR MaLR 264 742 -629 352 200 47 12 chr1 199728212 199728297 -82465367 + MLT1B-int LTR MaLR 679 766 -969 588 65 0 0 chr1 199728438 199728515 -82465149 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 559 350 98 42 chr1 199729037 199729446 -82464218 + L2 LINE L2 2840 3271 -1 201 176 0 103 chr1 199729522 199729590 -82464074 - MIR SINE MIR -49 213 153 7099 26 1 0 chr1 199730345 199731177 -82462487 - L1PA3 LINE L1 -5 6150 5318 * 16787 37 1 4 chr1 199731169 199733231 -82460433 + L1P LINE L1 548 2603 -3543 578 244 0 0 chr1 199733296 199733415 -82460249 + MER104 DNA Tc2 59 177 -3 388 256 107 25 chr1 199733460 199733581 -82460083 + MLT1L LTR MaLR 341 471 -144 269 343 20 10 chr1 199733581 199733683 -82459981 - MIR SINE MIR -113 149 47 315 256 0 0 chr1 199736238 199736328 -82457336 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 255 341 54 31 chr1 199736789 199736918 -82456746 + L2 LINE L2 3141 3272 0 399 348 94 19 chr1 199737006 199737273 -82456391 + L2 LINE L2 3027 3313 0 246 62 0 0 chr1 199737490 199737522 -82456142 + (CA)n Simple_repeat Simple_repeat 1 32 0 26 64 0 0 chr1 199739976 199740023 -82453641 + AT_rich Low_complexity Low_complexity 1 47 0 2282 143 59 7 chr1 199740275 199740681 -82452983 - MSTA LTR MaLR -1 427 1 606 221 50 59 chr1 199741672 199741894 -82451770 + MER112 DNA MER1_type 40 259 -1 225 65 0 0 chr1 199742121 199742152 -82451512 + (CA)n Simple_repeat Simple_repeat 2 32 0 1090 282 171 21 chr1 199742904 199743628 -82450036 + L2 LINE L2 2443 3292 -21 253 347 29 24 chr1 199744591 199744761 -82448903 + MIR SINE MIR 52 222 -40 366 259 145 112 chr1 199744761 199745162 -82448502 - MLT1H LTR MaLR 0 549 136 354 384 8 8 chr1 199745456 199745589 -82448075 + MIR SINE MIR 2 134 -128 231 136 114 0 chr1 199745587 199745631 -82448033 + L2 LINE L2 2174 2222 -1092 * 1694 292 151 10 chr1 199746110 199747064 -82446600 + L2 LINE L2 2212 3313 0 352 278 11 0 chr1 199747071 199747161 -82446503 + MIR SINE MIR 166 256 -6 1876 144 35 37 chr1 199747298 199747674 -82445990 - THE1C LTR MaLR 0 375 1 184 217 87 72 chr1 199748348 199748417 -82445247 - L2 LINE L2 -3 3269 3200 185 309 147 15 chr1 199748574 199748710 -82444954 - L2 LINE L2 -220 3052 2899 3270 159 3 2 chr1 199749363 199749930 -82443734 + L1PA16 LINE L1 5577 6144 -22 587 288 131 26 chr1 199750043 199750403 -82443261 + MLT1J1 LTR MaLR 44 399 -10 263 316 63 68 chr1 199750470 199750616 -82443048 - MIR SINE MIR 0 262 116 315 0 0 0 chr1 199750616 199750651 -82443013 + (TTG)n Simple_repeat Simple_repeat 2 36 0 263 316 63 68 chr1 199750651 199750694 -82442970 - MIR SINE MIR -146 116 74 222 246 106 140 chr1 199751133 199751361 -82442303 - MIR SINE MIR -9 253 36 730 248 51 14 chr1 199752118 199752332 -82441332 - LTR33 LTR ERVL -294 227 6 399 263 21 115 chr1 199753934 199754177 -82439487 + L2 LINE L2 2218 2437 -877 2331 114 0 0 chr1 199754445 199754751 -82438913 - AluSg SINE Alu -4 306 1 503 319 60 6 chr1 199755633 199755813 -82437851 + MIR SINE MIR 16 205 -57 279 344 200 5 chr1 199755813 199756028 -82437636 + MIR SINE MIR 3 259 -3 572 309 82 34 chr1 199757671 199757904 -82435760 - MIR SINE MIR 0 262 19 523 324 34 11 chr1 199757990 199758166 -82435498 - MIR3 SINE MIR -13 195 16 355 301 53 0 chr1 199758762 199758875 -82434789 + L2 LINE L2 3193 3311 -2 239 349 47 31 chr1 199759120 199759312 -82434352 + MIR3 SINE MIR 3 197 -11 252 0 0 0 chr1 199761073 199761101 -82432563 + (A)n Simple_repeat Simple_repeat 1 28 0 298 276 33 105 chr1 199761164 199761316 -82432348 - L2 LINE L2 -5 3267 3127 894 180 29 12 chr1 199761870 199762042 -82431622 + MIR SINE MIR 14 188 -74 340 281 9 53 chr1 199762893 199763007 -82430657 + MER70B LTR ERVL 454 562 -16 468 282 41 23 chr1 199763126 199763323 -82430341 + MIR SINE MIR 63 261 -1 1213 233 63 105 chr1 199764847 199765323 -82428341 + L2 LINE L2 2855 3310 -3 274 340 71 43 chr1 199765649 199765790 -82427874 - MIR3 SINE MIR -47 161 17 2674 35 0 6 chr1 199765866 199766179 -82427485 - AluY SINE Alu 0 311 1 2243 102 3 0 chr1 199768897 199769182 -82424482 - AluSp SINE Alu -17 296 11 787 315 73 19 chr1 199769456 199769824 -82423840 - MLT1J2 LTR MaLR -6 444 57 459 0 0 0 chr1 199770033 199770084 -82423580 + (TA)n Simple_repeat Simple_repeat 1 51 0 1607 188 3 24 chr1 199770089 199770381 -82423283 - AluJo SINE Alu -26 286 1 21 0 0 0 chr1 199770397 199770418 -82423246 + AT_rich Low_complexity Low_complexity 1 21 0 2858 10 0 0 chr1 199770424 199770733 -82422931 + AluYa5 SINE Alu 1 309 -2 307 298 70 35 chr1 199771563 199771791 -82421873 + L1MEd LINE L1 1015 1250 -5280 1188 199 26 0 chr1 199771800 199772072 -82421592 - L1P LINE L1 -2508 3638 3360 2626 133 2 5 chr1 199772075 199772502 -82421162 + L1PA13 LINE L1 5734 6159 -4 594 219 18 30 chr1 199772690 199772859 -82420805 + L1ME2 LINE L1 5998 6164 0 420 321 93 21 chr1 199772867 199773104 -82420560 + L1MEd LINE L1 1381 1634 -4896 261 286 29 7 chr1 199773126 199773266 -82420398 + HAL1 LINE L1 1396 1538 -969 341 283 44 50 chr1 199773750 199773909 -82419755 + L1MEd LINE L1 1872 2029 -4511 625 248 82 64 chr1 199774207 199774682 -82418982 + L1MEd LINE L1 2469 2909 -3631 854 312 68 37 chr1 199775094 199776439 -82417225 + L1MEd LINE L1 3684 5062 -1478 226 250 0 0 chr1 199776486 199776554 -82417110 + L1M4 LINE L1 2606 2673 -3473 352 313 54 0 chr1 199776591 199776703 -82416961 + L1MEc LINE L1 2310 2427 -3969 343 256 95 14 chr1 199776721 199776932 -82416732 + L1MEc LINE L1 2336 2563 -3652 24 53 0 0 chr1 199777086 199777124 -82416540 + AT_rich Low_complexity Low_complexity 1 38 0 367 275 131 44 chr1 199777585 199777745 -82415919 + HAL1b LINE L1 89 262 -1086 301 213 0 64 chr1 199777755 199777849 -82415815 + HAL1b LINE L1 373 460 -888 21 57 0 0 chr1 199777891 199777926 -82415738 + AT_rich Low_complexity Low_complexity 1 35 0 264 306 22 29 chr1 199777943 199778053 -82415611 + MIR SINE MIR 3 115 -93 485 303 82 48 chr1 199778308 199778539 -82415125 + MIR SINE MIR 23 261 -1 277 281 11 11 chr1 199778706 199778795 -82414869 + MIR3 SINE MIR 118 206 -2 788 284 181 17 chr1 199779000 199779419 -82414245 - L3 LINE CR1 -4 1573 1086 1053 326 47 35 chr1 199779426 199780200 -82413464 + L1M3a LINE L1 1 783 -5172 2608 251 51 14 chr1 199780377 199781384 -82412280 + L1MA6 LINE L1 556 1591 -4082 942 154 33 0 chr1 199781387 199781569 -82412095 + L1MA6 LINE L1 3745 3932 -2396 644 138 9 0 chr1 199781599 199781715 -82411949 + L1 LINE L1 4471 4587 -1559 547 110 0 0 chr1 199781712 199781794 -82411870 + L1MA6 LINE L1 3946 4027 -2301 * 5221 137 28 3 chr1 199781789 199782736 -82410928 + L1MA6 LINE L1 5513 6482 0 2343 101 0 0 chr1 199782827 199783135 -82410529 - AluSx SINE Alu -4 308 1 529 228 72 78 chr1 199783580 199783773 -82409891 + MIR SINE MIR 52 243 -19 * 558 286 36 60 chr1 199783770 199784022 -82409642 - L3 LINE CR1 -676 901 656 197 386 86 14 chr1 199784570 199784710 -82408954 + L2 LINE L2 2943 3092 -180 3768 268 107 17 chr1 199784980 199786581 -82407083 - L2 LINE L2 0 3313 1582 2578 196 36 6 chr1 199786810 199787342 -82406322 - MLT2B3 LTR ERVL -6 548 1 310 308 27 54 chr1 199787738 199787923 -82405741 + MLT1J2 LTR MaLR 267 446 -4 415 330 65 15 chr1 199789251 199789493 -82404171 + MIR SINE MIR 6 250 -12 653 190 26 134 chr1 199790274 199790543 -82403121 + MER112 DNA MER1_type 21 260 0 5100 223 78 25 chr1 199790641 199791471 -82402193 + L1MDa LINE L1 27 811 -5729 1614 157 195 19 chr1 199791471 199791835 -82401829 - MSTA LTR MaLR 0 428 1 5100 223 78 25 chr1 199791835 199792223 -82401441 + L1MDa LINE L1 811 1177 -5363 2464 75 0 3 chr1 199792223 199792529 -82401135 + AluY SINE Alu 1 305 -6 5100 223 78 25 chr1 199792529 199792851 -82400813 + L1MDa LINE L1 1177 1650 -4890 546 160 17 77 chr1 199792868 199793049 -82400615 + L1MB4 LINE L1 3797 3966 -2180 4561 193 63 22 chr1 199793106 199794898 -82398766 + L1MB4 LINE L1 4304 6179 -1 306 309 21 0 chr1 199794910 199795004 -82398660 + L1MC4 LINE L1 6914 7009 -1033 372 230 79 75 chr1 199795021 199795299 -82398365 + L1MC5 LINE L1 6923 7201 -760 305 256 39 39 chr1 199795374 199795503 -82398161 + L1MC4 LINE L1 7367 7495 -547 * 3027 206 88 27 chr1 199795501 199797446 -82396218 + L1MD1 LINE L1 4170 6224 -18 254 215 203 13 chr1 199797451 199797530 -82396134 + MIR SINE MIR 44 137 -71 41033 32 21 1 chr1 199800951 199806970 -82386694 + L1PA2 LINE L1 11 6150 -5 243 0 0 0 chr1 199806981 199807008 -82386656 + (A)n Simple_repeat Simple_repeat 1 27 0 374 253 207 0 chr1 199808290 199808440 -82385224 + MER5A DNA MER1_type 4 189 0 201 309 12 12 chr1 199808537 199808618 -82385046 - MIR SINE MIR 0 262 182 326 154 0 46 chr1 199809132 199809197 -82384467 - MIR3 SINE MIR -132 76 15 189 368 62 35 chr1 199809801 199809945 -82383719 + L2 LINE L2 3123 3270 -2 241 292 33 58 chr1 199810647 199810767 -82382897 - MIR SINE MIR -78 184 68 1781 207 75 6 chr1 199811057 199811550 -82382114 - MER69 DNA AcHobo 0 2526 2000 1755 262 58 4 chr1 199811538 199812035 -82381629 - MER69 DNA AcHobo -1958 568 45 * 230 158 0 0 chr1 199814738 199814776 -82378888 - MLT2F LTR ERVL -7 656 619 186 250 0 0 chr1 199814779 199814835 -82378829 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1303 213 202 9 chr1 199814835 199815326 -82378338 - MLT2F LTR ERVL -58 605 3 261 248 221 11 chr1 199816905 199817061 -82376603 + MIR SINE MIR 31 212 -50 330 345 18 60 chr1 199817135 199817303 -82376361 - MIR SINE MIR -45 163 3 731 193 0 8 chr1 199817582 199817701 -82375963 - FLAM_A SINE Alu -15 118 1 25 31 0 0 chr1 199818524 199818556 -82375108 + AT_rich Low_complexity Low_complexity 1 32 0 366 274 39 99 chr1 199818563 199819151 -82374513 - L1MC5 LINE L1 -70 7891 7339 320 305 104 18 chr1 199819160 199819324 -82374340 + MLT1H1 LTR MaLR 77 254 -301 280 295 72 7 chr1 199819482 199819621 -82374043 + MLT1H1 LTR MaLR 448 595 0 422 268 41 14 chr1 199819628 199819928 -82373736 - L1MCc LINE L1 -4887 1536 1287 2489 74 0 0 chr1 199820957 199821256 -82372408 - AluY SINE Alu -12 299 1 202 236 109 0 chr1 199821353 199821408 -82372256 + MIR SINE MIR 81 141 -67 407 312 198 39 chr1 199821501 199821744 -82371920 + L2 LINE L2 2809 3012 -260 3262 126 76 2 chr1 199821744 199822260 -82371404 + MER41C LTR ERV1 1 554 0 407 312 198 39 chr1 199822260 199822375 -82371289 + L2 LINE L2 3012 3224 -48 218 424 15 15 chr1 199822448 199822580 -82371084 - L2 LINE L2 0 3272 3141 183 42 0 0 chr1 199823235 199823259 -82370405 + (CAA)n Simple_repeat Simple_repeat 2 25 0 372 281 23 8 chr1 199825022 199825150 -82368514 + LTR67 LTR ERVL 428 557 0 206 321 248 0 chr1 199825462 199825571 -82368093 + MIR SINE MIR 18 153 -109 246 327 20 50 chr1 199825658 199825759 -82367905 - L2 LINE L2 -177 3095 2998 527 253 133 6 chr1 199825779 199825937 -82367727 - MIR SINE MIR 0 262 85 223 303 8 74 chr1 199826884 199827006 -82366658 - MIR SINE MIR -51 211 98 370 343 94 17 chr1 199827433 199827614 -82366050 - MER91A DNA MER1_type -1 195 1 245 285 44 60 chr1 199828127 199828446 -82365218 + L1MEd LINE L1 896 1209 -4910 409 305 72 82 chr1 199828483 199828866 -82364798 + L1MEd LINE L1 1284 1694 -796 676 279 113 60 chr1 199828939 199829494 -82364170 + L1ME LINE L1 3181 3765 -2364 683 215 35 18 chr1 199829500 199829728 -82363936 + L1MC5 LINE L1 7680 7911 -50 549 284 18 51 chr1 199829837 199830172 -82363492 + L1ME LINE L1 3873 4196 -1933 533 293 79 40 chr1 199830239 199831193 -82362471 + L1ME LINE L1 4521 5497 -650 1937 118 42 7 chr1 199831677 199831966 -82361698 + AluSq SINE Alu 1 299 -14 649 45 0 11 chr1 199832576 199832665 -82360999 + L1PA2 LINE L1 6068 6155 0 416 327 20 0 chr1 199832827 199832980 -82360684 + LTR33 LTR ERVL 22 177 -344 484 282 39 15 chr1 199833071 199833277 -82360387 + LTR33 LTR ERVL 307 517 -4 434 249 106 114 chr1 199834211 199834456 -82359208 - L2 LINE L2 -25 3288 3046 181 302 12 81 chr1 199834964 199835050 -82358614 - MIR SINE MIR -117 145 66 408 306 40 44 chr1 199835724 199836099 -82357565 + MLT1J2 LTR MaLR 40 432 0 2001 144 3 0 chr1 199837043 199837341 -82356323 + AluSx SINE Alu 14 312 0 31528 53 2 1 chr1 199838833 199844977 -82348687 - L1PA4 LINE L1 0 6155 2 1344 264 67 67 chr1 199844979 199845700 -82347964 - L1ME LINE L1 -4613 1467 740 2529 54 0 0 chr1 199845700 199845996 -82347668 + AluY SINE Alu 13 308 -3 1344 264 67 67 chr1 199845996 199846454 -82347210 - L1ME LINE L1 -5340 740 283 260 293 78 58 chr1 199846645 199846850 -82346814 + LTR67 LTR ERVL 349 557 0 274 208 94 83 chr1 199846854 199846950 -82346714 + AluJ/FLAM SINE Alu 1 76 -226 * 1533 124 66 12 chr1 199846946 199847204 -82346460 + MER66B LTR ERV1 215 486 0 389 206 20 29 chr1 199847204 199847277 -82346387 - MLT1C LTR MaLR -219 248 177 2285 77 7 3 chr1 199847282 199847569 -82346095 - AluSp SINE Alu -21 292 5 777 116 116 16 chr1 199847582 199847703 -82345961 - FLAM_C SINE Alu 0 133 1 1014 174 151 0 chr1 199847703 199847915 -82345749 + MER58B DNA MER1_type 81 324 -17 865 181 0 0 chr1 199847915 199848048 -82345616 + FLAM_A SINE Alu 1 133 0 585 275 128 14 chr1 199848223 199848434 -82345230 + L1MEd LINE L1 527 761 -5444 228 135 0 0 chr1 199848459 199848496 -82345168 + (A)n Simple_repeat Simple_repeat 1 37 0 907 225 49 63 chr1 199848503 199848992 -82344672 + L1MEd LINE L1 767 1248 -4957 1657 141 15 78 chr1 199848992 199849325 -82344339 + AluJo SINE Alu 1 312 0 21 0 0 0 chr1 199849596 199849617 -82344047 + AT_rich Low_complexity Low_complexity 1 21 0 775 261 56 28 chr1 199849625 199849874 -82343790 + MIR SINE MIR 6 261 -1 595 300 118 63 chr1 199851090 199852015 -82341649 + L2 LINE L2 2323 3271 -1 2604 242 58 20 chr1 199853789 199854541 -82339123 + L1MEd LINE L1 62 842 -5554 645 230 82 10 chr1 199854660 199854856 -82338808 + L1MEd LINE L1 1443 1652 -4563 288 110 37 46 chr1 199854871 199854980 -82338684 + (TA)n Simple_repeat Simple_repeat 2 109 0 379 205 47 24 chr1 199854986 199855113 -82338551 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 1220 248 52 16 chr1 199855118 199855237 -82338427 + L1MEd LINE L1 1780 1893 -4503 483 100 0 0 chr1 199855237 199855307 -82338357 + (TA)n Simple_repeat Simple_repeat 1 70 0 1220 248 52 16 chr1 199855307 199855550 -82338114 + L1MEd LINE L1 1893 2155 -4241 412 267 38 0 chr1 199855558 199855689 -82337975 + L1MA10 LINE L1 6196 6331 -3 385 308 0 17 chr1 199855809 199855926 -82337738 - MIR3 SINE MIR 0 208 94 490 303 67 10 chr1 199857576 199857771 -82335893 - MIR SINE MIR 0 262 57 1220 62 7 0 chr1 199860013 199860159 -82333505 + L1PA7 LINE L1 5992 6138 -16 276 30 0 0 chr1 199860184 199860217 -82333447 + (A)n Simple_repeat Simple_repeat 1 33 0 338 266 34 126 chr1 199860228 199860435 -82333229 - L2 LINE L2 -57 3215 3028 22 0 0 0 chr1 199860705 199860727 -82332937 + AT_rich Low_complexity Low_complexity 1 22 0 378 247 36 18 chr1 199860812 199860978 -82332686 + L1M4 LINE L1 5177 5345 -801 529 150 0 0 chr1 199861058 199861138 -82332526 + AluS SINE Alu 1 80 -233 1008 35 0 0 chr1 199861302 199861418 -82332246 + L1P LINE L1 2 117 -6029 30 83 0 0 chr1 199861618 199861690 -82331974 + AT_rich Low_complexity Low_complexity 1 72 0 267 314 65 59 chr1 199861896 199862405 -82331259 + L1ME LINE L1 4298 4809 -1337 848 283 39 41 chr1 199862686 199863130 -82330534 + L1ME LINE L1 5215 5657 -509 * 922 181 35 35 chr1 199863124 199863378 -82330286 + L1MA7 LINE L1 5083 5336 -810 1864 125 16 22 chr1 199863378 199863689 -82329975 - THE1C LTR MaLR 0 375 67 4239 161 32 18 chr1 199863694 199864479 -82329185 + L1MA7 LINE L1 5485 6280 -11 241 306 142 35 chr1 199865663 199865763 -82327901 + MLT1I LTR MaLR 127 215 -194 2514 72 0 3 chr1 199865763 199866070 -82327594 - AluY SINE Alu -5 306 1 241 306 142 35 chr1 199866070 199866201 -82327463 + MLT1I LTR MaLR 215 383 -26 732 174 158 15 chr1 199866681 199866877 -82326787 + MARNA DNA Mariner 20 243 -343 2840 222 27 10 chr1 199867180 199868235 -82325429 + L1M4 LINE L1 2733 3907 -2239 340 321 0 0 chr1 199869643 199869724 -82323940 - L2 LINE L2 -6 3266 3186 356 341 104 37 chr1 199870524 199870955 -82322709 + L2 LINE L2 163 622 -2692 379 252 36 9 chr1 199872748 199872859 -82320805 + MIR SINE MIR 78 191 -71 460 318 138 0 chr1 199873937 199874126 -82319538 + MIR SINE MIR 21 235 -27 628 277 45 21 chr1 199874796 199875038 -82318626 + L2 LINE L2 1702 1949 -1365 582 271 106 13 chr1 199875254 199875525 -82318139 - L1ME2 LINE L1 -193 5977 5685 2634 275 58 34 chr1 199875530 199876670 -82316994 + L2 LINE L2 1921 3096 -217 428 316 110 29 chr1 199877269 199877478 -82316186 - MIR SINE MIR -2 260 35 265 292 150 8 chr1 199877590 199877710 -82315954 - L2 LINE L2 0 3272 3136 241 276 195 0 chr1 199877716 199877803 -82315861 + MIR SINE MIR 21 124 -138 777 215 6 51 chr1 199877824 199878001 -82315663 + ERVL-D LTR ERVL 5587 5755 -9 1181 218 40 27 chr1 199878010 199878310 -82315354 + MLT2D LTR ERVL 68 479 -41 315 0 0 0 chr1 199878349 199878384 -82315280 + (TG)n Simple_repeat Simple_repeat 2 36 0 875 302 69 0 chr1 199878427 199878672 -82314992 - L2 LINE L2 -556 2758 2497 259 336 82 41 chr1 199879685 199879807 -82313857 - L2 LINE L2 -31 3241 3115 268 259 0 0 chr1 199881277 199881335 -82312329 + L2 LINE L2 3210 3267 -5 390 339 90 16 chr1 199881367 199881556 -82312108 + L2 LINE L2 3068 3270 -2 602 49 12 0 chr1 199881575 199881657 -82312007 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 453 280 159 11 chr1 199881735 199881924 -82311740 - MIR SINE MIR -12 250 34 260 256 93 47 chr1 199882238 199882324 -82311340 + MIR SINE MIR 31 120 -88 306 0 0 0 chr1 199882387 199882421 -82311243 + (T)n Simple_repeat Simple_repeat 1 34 0 340 284 11 0 chr1 199883436 199883524 -82310140 - L2 LINE L2 0 3313 3225 475 313 47 33 chr1 199883531 199883742 -82309922 - MIR SINE MIR -1 261 48 598 279 111 5 chr1 199884235 199884443 -82309221 - MIR SINE MIR 0 262 33 259 222 0 16 chr1 199886125 199886188 -82307476 + GA-rich Low_complexity Low_complexity 2 63 0 441 245 10 37 chr1 199886948 199887073 -82306591 - MER5B DNA MER1_type -2 176 67 505 257 0 43 chr1 199887504 199887644 -82306020 - MER5A DNA MER1_type -46 143 10 311 284 173 19 chr1 199888629 199888791 -82304873 - MIR SINE MIR -56 206 20 673 254 60 30 chr1 199889131 199889363 -82304301 - MIR SINE MIR -9 253 15 354 61 0 0 chr1 199890124 199890173 -82303491 + (GA)n Simple_repeat Simple_repeat 2 50 0 4789 77 2 0 chr1 199890251 199890871 -82302793 + L1P LINE L1 1 621 -5525 28777 43 3 1 chr1 199890972 199896915 -82296749 + L1PA5 LINE L1 190 6143 -11 25 31 0 0 chr1 199896915 199896947 -82296717 + AT_rich Low_complexity Low_complexity 1 32 0 1557 260 98 15 chr1 199896947 199898103 -82295561 + L1MDa LINE L1 1911 3167 -3373 180 77 0 0 chr1 199898209 199898235 -82295429 + (TG)n Simple_repeat Simple_repeat 1 26 0 200 191 12 60 chr1 199898236 199898320 -82295344 + (TA)n Simple_repeat Simple_repeat 2 81 0 1301 213 63 10 chr1 199898320 199898658 -82295006 - MLT2C1 LTR ERVL -40 424 3 197 305 0 34 chr1 199898914 199898973 -82294691 - MER5A DNA MER1_type -131 58 2 430 350 98 0 chr1 199898987 199899190 -82294474 - L3 LINE CR1 -61 1516 1294 823 335 109 32 chr1 199899665 199900369 -82293295 - L2 LINE L2 0 3313 2534 276 244 12 73 chr1 199900397 199900479 -82293185 + L2 LINE L2 3163 3239 -33 2835 203 34 28 chr1 199900489 199901130 -82292534 - MER82 DNA MER2_type -7 646 2 1988 290 85 21 chr1 199901180 199902072 -82291592 - L2 LINE L2 -846 2468 1520 315 0 0 0 chr1 199902102 199902137 -82291527 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 321 73 18 chr1 199902137 199902302 -82291362 - L3 LINE CR1 -714 863 690 443 305 167 6 chr1 199902726 199902900 -82290764 - MIR SINE MIR -34 228 27 1913 107 8 0 chr1 199904974 199905235 -82288429 - AluSx SINE Alu -11 301 39 691 293 31 9 chr1 199905481 199905710 -82287954 + MIR SINE MIR 29 262 0 388 300 118 27 chr1 199905868 199906088 -82287576 + MIR SINE MIR 3 242 -20 194 337 54 11 chr1 199907475 199907567 -82286097 + MIR SINE MIR 50 145 -117 478 247 48 54 chr1 199910363 199910549 -82283115 + MIR SINE MIR 18 204 -53 576 276 95 13 chr1 199911510 199911742 -82281922 + MIR SINE MIR 8 262 0 435 276 103 0 chr1 199912378 199912534 -82281130 - MIR SINE MIR -21 241 70 12558 104 7 1 chr1 199912542 199914472 -82279192 + L1PA8 LINE L1 2870 4812 -1334 7000 68 6 2 chr1 199914572 199915767 -82277897 + L1PA8 LINE L1 4973 6172 0 22 0 0 0 chr1 199915778 199915800 -82277864 + AT_rich Low_complexity Low_complexity 1 22 0 619 85 0 0 chr1 199915902 199915996 -82277668 + MER53 DNA DNA 95 188 -1 308 297 113 31 chr1 199916820 199917042 -82276622 + L1MEd LINE L1 788 1027 -5092 15738 101 15 7 chr1 199917051 199917213 -82276451 - L1P LINE L1 -2237 3909 3750 2148 110 0 26 chr1 199917213 199917523 -82276141 - AluSx SINE Alu -10 302 1 15738 101 15 7 chr1 199917523 199919845 -82273819 - L1P LINE L1 -2396 3750 1406 4960 192 5 0 chr1 199919843 199920699 -82272965 + L1PA13 LINE L1 726 1585 -5996 * 7132 222 31 10 chr1 199920715 199922532 -82271132 + L1PA13 LINE L1 2427 4281 -3303 8851 154 19 38 chr1 199922537 199924939 -82268725 + L1PA13 LINE L1 5184 7599 -2 1217 209 16 42 chr1 199924952 199925258 -82268406 + AluJo SINE Alu 1 298 -4 358 127 0 0 chr1 199925424 199925487 -82268177 + Alu SINE Alu 240 302 0 12645 38 6 4 chr1 199925641 199927332 -82266332 + L1P LINE L1 2017 3710 -2436 8648 50 10 8 chr1 199927332 199928401 -82265263 - MER11C LTR ERVK 0 1071 1 7536 67 5 3 chr1 199928401 199929399 -82264265 - HERVK11 LTR ERVK 0 7953 6954 * 10670 82 5 1 chr1 199929383 199930855 -82262809 - HERVK11 LTR ERVK -1188 6765 5287 7123 74 2 1 chr1 199930869 199931800 -82261864 - MER11C LTR ERVK -136 935 4 13437 43 0 3 chr1 199931800 199934276 -82259388 + L1PA5 LINE L1 3702 6149 -5 27 49 0 0 chr1 199934286 199934327 -82259337 + AT_rich Low_complexity Low_complexity 1 41 0 1709 103 0 0 chr1 199934826 199935049 -82258615 + AluSq SINE Alu 86 308 -5 1176 181 35 26 chr1 199935316 199935548 -82258116 + AluJo SINE Alu 1 234 -78 381 165 43 180 chr1 199935999 199936254 -82257410 - MER112 DNA MER1_type -2 258 39 606 284 43 25 chr1 199936300 199936582 -82257082 + L1ME3 LINE L1 5670 5956 -206 457 278 42 35 chr1 199937832 199937976 -82255688 + MIR SINE MIR 8 152 -110 468 266 274 18 chr1 199938070 199938461 -82255203 + L2 LINE L2 2818 3308 -5 304 260 50 30 chr1 199938462 199938562 -82255102 + MIR SINE MIR 161 262 0 675 299 41 12 chr1 199939483 199939727 -82253937 + MIR SINE MIR 2 252 -10 604 224 16 8 chr1 199939792 199939917 -82253747 - L2 LINE L2 0 3313 3188 1104 236 8 16 chr1 199939940 199940190 -82253474 - MIR SINE MIR -13 249 2 230 318 108 54 chr1 199940190 199940314 -82253350 + L2 LINE L2 3182 3312 -1 232 253 152 0 chr1 199940786 199940865 -82252799 + MLT1I LTR MaLR 98 188 -221 279 236 173 0 chr1 199941034 199941144 -82252520 + MLT1H LTR MaLR 405 533 -16 297 219 24 24 chr1 199941171 199941253 -82252411 + MLT1H-int LTR MaLR 1 82 -1653 788 219 138 0 chr1 199942104 199942300 -82251364 + MER58A DNA MER1_type 1 223 -1 243 283 28 69 chr1 199942352 199942497 -82251167 + MLT1H-int LTR MaLR 1032 1170 -201 228 77 0 26 chr1 199942704 199942743 -82250921 + MLT1H LTR MaLR 125 162 -387 227 154 0 0 chr1 199942710 199942749 -82250915 + MLT1I LTR MaLR 98 136 -273 * 256 161 15 10 chr1 199942968 199943031 -82250633 + MLT1G1 LTR MaLR 488 579 -16 328 271 29 88 chr1 199943120 199943290 -82250374 + MIR SINE MIR 47 206 -56 264 323 118 0 chr1 199944580 199944673 -82248991 - L2 LINE L2 0 3272 3169 2096 100 43 0 chr1 199944693 199944973 -82248691 + AluSg SINE Alu 5 296 -14 252 213 0 0 chr1 199944985 199945032 -82248632 + L2 LINE L2 3219 3265 -7 2447 92 0 0 chr1 199945358 199945661 -82248003 + AluSx SINE Alu 1 303 -9 212 200 40 0 chr1 199945714 199945764 -82247900 + MIR3 SINE MIR 129 180 -28 582 315 76 4 chr1 199945788 199946026 -82247638 - MIR SINE MIR -4 258 4 443 157 11 0 chr1 199947052 199947141 -82246523 + (TG)n Simple_repeat Simple_repeat 1 90 0 284 286 12 12 chr1 199948066 199948150 -82245514 + GA-rich Low_complexity Low_complexity 1 84 0 330 316 111 0 chr1 199948408 199948525 -82245139 - L2 LINE L2 -22 3250 3121 376 281 9 18 chr1 199948884 199948998 -82244666 + L2 LINE L2 3199 3311 -2 215 306 104 10 chr1 199949220 199949413 -82244251 - L2 LINE L2 -840 2474 2264 276 289 11 33 chr1 199949636 199949726 -82243938 + MIR SINE MIR 169 256 -6 264 286 78 71 chr1 199949768 199949789 -82243875 + MIR SINE MIR 52 71 -191 2692 77 21 21 chr1 199949789 199950164 -82243500 - THE1C LTR MaLR 0 375 1 264 286 78 71 chr1 199950164 199950296 -82243368 + MIR SINE MIR 71 206 -56 856 261 92 71 chr1 199951946 199952425 -82241239 - LTR33 LTR ERVL 0 521 33 300 288 65 14 chr1 199953489 199953675 -82239989 + MIR SINE MIR 15 259 -3 302 289 195 6 chr1 199953757 199953916 -82239748 - MIR SINE MIR -1 261 73 434 282 81 62 chr1 199954056 199954370 -82239294 - L2 LINE L2 -252 3020 2702 218 286 71 45 chr1 199954968 199955080 -82238584 - L2 LINE L2 0 3272 3158 325 316 23 0 chr1 199956420 199956553 -82237111 + MIR SINE MIR 114 249 -13 973 336 206 15 chr1 199956576 199957565 -82236099 - L2 LINE L2 -349 2965 1788 304 347 58 5 chr1 199958880 199959070 -82234594 - MIR SINE MIR -8 254 55 330 171 197 17 chr1 199959916 199960033 -82233631 - MIR SINE MIR 0 262 125 192 125 0 0 chr1 199960336 199960368 -82233296 + (TC)n Simple_repeat Simple_repeat 1 32 0 210 37 0 0 chr1 199961936 199961963 -82231701 + (TG)n Simple_repeat Simple_repeat 2 28 0 3152 169 44 57 chr1 199962378 199963081 -82230583 + LTR8A LTR ERV1 34 727 0 521 175 182 0 chr1 199963199 199963342 -82230322 - MIR SINE MIR -56 206 38 221 310 101 31 chr1 199964666 199964795 -82228869 - MIR3 SINE MIR -67 141 4 28 29 0 0 chr1 199965572 199965607 -82228057 + AT_rich Low_complexity Low_complexity 1 35 0 12975 36 0 0 chr1 199965734 199968045 -82225619 + L1PA4 LINE L1 3841 6152 -3 308 262 138 21 chr1 199968706 199968875 -82224789 + MIR3 SINE MIR 3 192 -65 372 316 140 12 chr1 199969344 199969673 -82223991 + L2 LINE L2 2313 2683 -631 281 274 75 0 chr1 199969773 199969879 -82223785 + L2 LINE L2 2925 3038 -234 194 300 0 14 chr1 199970033 199970103 -82223561 + L2 LINE L2 3243 3311 -2 862 227 84 0 chr1 199970826 199971029 -82222635 + MLT1H LTR MaLR 14 233 -316 223 233 0 0 chr1 199971029 199971072 -82222592 + CT-rich Low_complexity Low_complexity 2 44 0 304 241 25 13 chr1 199971072 199971151 -82222513 + MLT1H LTR MaLR 223 302 -247 1735 251 81 26 chr1 199971160 199971379 -82222285 - MLT1G1 LTR MaLR 0 595 389 204 40 0 0 chr1 199971379 199971404 -82222260 + (CTCA)n Simple_repeat Simple_repeat 4 28 0 1735 251 81 26 chr1 199971404 199971729 -82221935 - MLT1G1 LTR MaLR -206 389 21 357 227 118 70 chr1 199971742 199971799 -82221865 + MLT1H LTR MaLR 277 330 -213 204 40 0 0 chr1 199971799 199971824 -82221840 + (CA)n Simple_repeat Simple_repeat 1 25 0 357 227 118 70 chr1 199971824 199971995 -82221669 + MLT1H LTR MaLR 330 517 -26 249 226 43 54 chr1 199972017 199972110 -82221554 + MIR SINE MIR 105 196 -66 961 297 46 32 chr1 199974530 199974964 -82218700 + MLT1J2 LTR MaLR 9 448 -2 418 273 215 24 chr1 199975351 199975560 -82218104 - MIR SINE MIR 0 262 14 345 47 0 0 chr1 199976172 199976215 -82217449 + (CA)n Simple_repeat Simple_repeat 1 43 0 444 19 0 0 chr1 199976374 199976427 -82217237 + (TG)n Simple_repeat Simple_repeat 2 54 0 2339 126 25 6 chr1 199976797 199977154 -82216510 - THE1B LTR MaLR 0 364 1 814 115 65 7 chr1 199977529 199977668 -82215996 + MLT2C1 LTR ERVL 1 147 -250 359 256 23 0 chr1 199977591 199977677 -82215987 + MLT1E3 LTR MaLR 90 177 -447 * 1205 72 0 12 chr1 199977841 199978007 -82215657 + L1PA6 LINE L1 5991 6154 0 293 125 0 0 chr1 199978713 199978753 -82214911 + Alu SINE Alu 1 40 -262 2166 108 3 0 chr1 199978813 199979101 -82214563 + AluSq SINE Alu 1 289 -24 216 0 0 0 chr1 199979111 199979135 -82214529 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 875 236 74 62 chr1 199981330 199981836 -82211828 + L1ME4a LINE L1 5340 5856 -265 286 223 268 0 chr1 199981879 199981991 -82211673 + L1ME4a LINE L1 5976 6117 -4 881 264 79 24 chr1 199982049 199982403 -82211261 - MLT1I LTR MaLR -25 425 3 197 336 90 41 chr1 199983188 199983432 -82210232 + L2 LINE L2 2437 2692 -622 2054 68 0 4 chr1 199983465 199983728 -82209936 + L1PA7 LINE L1 5887 6148 -6 207 0 0 0 chr1 199984084 199984107 -82209557 + (TTCTC)n Simple_repeat Simple_repeat 3 25 0 1858 264 89 23 chr1 199984112 199985181 -82208483 + L2 LINE L2 2165 3307 -6 261 353 143 54 chr1 199985518 199985943 -82207721 - L2 LINE L2 -1 3271 2809 358 369 28 14 chr1 199986580 199986721 -82206943 + L2 LINE L2 3122 3264 -8 180 0 0 0 chr1 199987444 199987464 -82206200 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr1 199987881 199987909 -82205755 + AT_rich Low_complexity Low_complexity 1 28 0 309 261 180 0 chr1 199987915 199988026 -82205638 - L2 LINE L2 0 3313 3183 239 308 0 0 chr1 199988248 199988313 -82205351 - MIR SINE MIR 0 262 198 1425 201 94 183 chr1 199988404 199988935 -82204729 + MLT1E2 LTR MaLR 22 626 0 380 259 134 56 chr1 199988990 199989206 -82204458 - MIR SINE MIR -22 240 8 225 0 0 0 chr1 199989548 199989573 -82204091 + (A)n Simple_repeat Simple_repeat 1 25 0 353 219 70 26 chr1 199989891 199990005 -82203659 - L2 LINE L2 -4 3309 3191 214 197 87 12 chr1 199990332 199990459 -82203205 + MIR SINE MIR 65 248 -14 1573 164 47 128 chr1 199990610 199990951 -82202713 + MLT1C LTR MaLR 1 289 -178 5132 82 46 9 chr1 199990951 199991618 -82202046 - L1PA16 LINE L1 -9 6157 5448 207 0 0 0 chr1 199991618 199991641 -82202023 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5132 82 46 9 chr1 199991641 199992158 -82201506 - L1PA16 LINE L1 -718 5448 4951 1573 164 47 128 chr1 199992158 199992323 -82201341 + MLT1C LTR MaLR 289 466 -1 334 250 0 0 chr1 199992385 199992453 -82201211 + L2 LINE L2 3246 3313 0 635 180 22 73 chr1 199994805 199994983 -82198681 - MER5B DNA MER1_type 0 178 10 282 265 0 29 chr1 199995175 199995243 -82198421 - L2 LINE L2 0 3272 3207 192 152 0 0 chr1 199995337 199995370 -82198294 + CT-rich Low_complexity Low_complexity 2 34 0 739 276 44 16 chr1 199995995 199996245 -82197419 - MIR SINE MIR -1 261 5 310 289 128 56 chr1 199996305 199996485 -82197179 + MIR SINE MIR 62 254 -8 2536 147 44 111 chr1 199996599 199997102 -82196562 - L1MB8 LINE L1 0 6178 5728 1774 161 0 4 chr1 199997102 199997376 -82196288 + AluJo SINE Alu 18 290 -22 2536 147 44 111 chr1 199997376 199997530 -82196134 - L1MB8 LINE L1 -450 5728 5565 395 171 12 24 chr1 199997548 199997630 -82196034 + MIR SINE MIR 71 151 -111 2317 123 38 44 chr1 199999216 199999582 -82194082 + THE1B LTR MaLR 1 364 0 391 284 156 50 chr1 199999673 199999955 -82193709 + L2 LINE L2 2914 3225 -47 525 238 68 20 chr1 200000321 200000468 -82193196 + MIR SINE MIR 36 189 -73 2415 88 0 0 chr1 200000620 200000925 -82192739 - AluSx SINE Alu -7 305 1 25 31 0 0 chr1 200000964 200000996 -82192668 + AT_rich Low_complexity Low_complexity 1 32 0 195 327 18 0 chr1 200001490 200001545 -82192119 - L2 LINE L2 -5 3308 3253 327 308 23 30 chr1 200001962 200002095 -82191569 + MIR3 SINE MIR 14 145 -63 196 286 52 13 chr1 200002438 200002515 -82191149 + MIR3 SINE MIR 98 177 -31 221 323 30 70 chr1 200002670 200002871 -82190793 - L3 LINE CR1 -1123 454 262 472 278 141 5 chr1 200004169 200004367 -82189297 + MIR SINE MIR 9 233 -29 1170 228 20 12 chr1 200004782 200005037 -82188627 + MIR SINE MIR 5 261 -1 378 0 0 0 chr1 200005172 200005214 -82188450 + (CA)n Simple_repeat Simple_repeat 2 43 0 586 324 114 57 chr1 200005540 200006190 -82187474 - L2 LINE L2 -9 3263 2577 488 245 85 71 chr1 200007259 200007471 -82186193 + MER20 DNA MER1_type 1 215 -4 229 305 37 12 chr1 200008172 200008254 -82185410 + L2 LINE L2 3226 3309 -4 1262 229 115 69 chr1 200008555 200009078 -82184586 + MLT1H LTR MaLR 1 547 -2 2931 156 18 22 chr1 200009363 200009908 -82183756 - L1MA5 LINE L1 0 6300 5758 656 155 60 9 chr1 200010511 200010627 -82183037 + Tigger5 DNA MER2_type 2 123 -2200 * 2397 145 15 15 chr1 200010626 200011020 -82182644 + Tigger5 DNA MER2_type 1930 2323 0 307 264 32 84 chr1 200011118 200011273 -82182391 + L1MEd LINE L1 1334 1480 -4892 22 35 0 0 chr1 200011279 200011308 -82182356 + AT_rich Low_complexity Low_complexity 1 29 0 524 324 22 23 chr1 200011308 200011583 -82182081 + L1MEd LINE L1 1568 1897 -846 492 274 65 35 chr1 200011695 200012092 -82181572 + L1MEd LINE L1 2277 2694 -3688 506 284 31 6 chr1 200012092 200012254 -82181410 - MIR SINE MIR -13 249 84 958 271 72 12 chr1 200012416 200012748 -82180916 + L1MC4 LINE L1 7095 7446 -596 486 214 0 0 chr1 200012973 200013062 -82180602 + MLT1F1 LTR MaLR 36 124 -443 1195 167 15 0 chr1 200013064 200013262 -82180402 + L1MD3 LINE L1 7404 7604 -391 7204 170 19 32 chr1 200013266 200013355 -82180309 + L1PA16 LINE L1 1 90 -6759 869 144 0 134 chr1 200013355 200013542 -82180122 + FRAM SINE Alu 1 162 -4 7204 170 19 32 chr1 200013542 200014726 -82178938 + L1PA16 LINE L1 90 1257 -5592 3150 214 9 27 chr1 200014758 200015525 -82178139 + L1PA16 LINE L1 5279 6031 -818 1446 126 34 0 chr1 200015525 200015732 -82177932 + AluSg/x SINE Alu 76 289 -23 5787 113 13 0 chr1 200015733 200016560 -82177104 + L1PA16 LINE L1 6023 6860 -9 2111 169 31 0 chr1 200016575 200016960 -82176704 + L1MD3 LINE L1 7590 7986 -9 425 316 75 6 chr1 200017035 200017394 -82176270 + L1M4 LINE L1 5256 5657 -517 21 36 0 0 chr1 200018330 200018358 -82175306 + AT_rich Low_complexity Low_complexity 1 28 0 237 328 70 31 chr1 200020244 200020471 -82173193 + MIR SINE MIR 17 259 -3 2560 50 3 0 chr1 200021152 200021449 -82172215 + AluY SINE Alu 1 298 -13 590 245 120 6 chr1 200021814 200022005 -82171659 - MIR SINE MIR -16 246 39 2096 81 0 0 chr1 200022879 200023157 -82170507 + AluY SINE Alu 23 300 0 305 262 84 19 chr1 200023241 200023348 -82170316 - L2 LINE L2 -18 3254 3141 781 326 28 72 chr1 200023653 200024083 -82169581 + L2 LINE L2 2862 3272 0 245 323 20 10 chr1 200024541 200024640 -82169024 + L3b LINE CR1 1390 1489 -94 1005 169 41 149 chr1 200025834 200026030 -82167634 + MER33 DNA MER1_type 1 142 -2443 929 137 64 137 chr1 200026030 200026264 -82167400 - MER20 DNA MER1_type 0 219 3 1005 169 41 149 chr1 200026264 200026429 -82167235 + MER33 DNA MER1_type 142 323 -1 974 279 59 60 chr1 200027229 200027639 -82166025 - MLT1L LTR MaLR -2 613 163 751 199 88 44 chr1 200027639 200027820 -82165844 + MER5A DNA MER1_type 1 189 0 974 279 59 60 chr1 200027820 200027981 -82165683 - MLT1L LTR MaLR -452 163 3 298 284 149 68 chr1 200028197 200028345 -82165319 - MIR SINE MIR -71 191 32 498 213 125 7 chr1 200030486 200030622 -82163042 + MIR SINE MIR 111 262 0 325 256 93 16 chr1 200030645 200030774 -82162890 + L2 LINE L2 3173 3311 -2 282 254 0 0 chr1 200030853 200030916 -82162748 - L2 LINE L2 0 3313 3251 428 262 50 7 chr1 200030924 200031065 -82162599 - L2 LINE L2 -228 3085 2939 190 278 111 0 chr1 200031342 200031414 -82162250 + MIR SINE MIR 183 262 0 316 352 70 0 chr1 200031549 200031691 -82161973 + L2 LINE L2 3121 3272 0 363 96 0 0 chr1 200032234 200032286 -82161378 + (GGGGA)n Simple_repeat Simple_repeat 2 53 0 358 281 68 23 chr1 200032436 200032549 -82161115 - MIR SINE MIR -67 141 45 2476 106 30 38 chr1 200032549 200032916 -82160748 + THE1B LTR MaLR 1 364 0 358 281 68 23 chr1 200032916 200032951 -82160713 - MIR SINE MIR -163 45 13 681 129 90 58 chr1 200033189 200033344 -82160320 - MER106B DNA MER1_type -4 1055 896 291 292 90 28 chr1 200033813 200033957 -82159707 - MIR3 SINE MIR -21 187 35 211 254 0 32 chr1 200034334 200034397 -82159267 + L2 LINE L2 2999 3059 -213 2086 139 3 0 chr1 200034566 200034867 -82158797 + AluSx SINE Alu 1 302 -10 432 118 0 0 chr1 200034869 200034937 -82158727 + (GGA)n Simple_repeat Simple_repeat 3 70 0 189 350 0 0 chr1 200034989 200035049 -82158615 + L2 LINE L2 3209 3268 -4 210 37 0 0 chr1 200035605 200035632 -82158032 + (CA)n Simple_repeat Simple_repeat 1 27 0 344 341 126 7 chr1 200037002 200037272 -82156392 - L2 LINE L2 -60 3212 2911 2316 219 90 32 chr1 200037410 200037745 -82155919 + L2 LINE L2 2257 2571 -742 2147 109 0 3 chr1 200037745 200038057 -82155607 - AluSg SINE Alu 0 311 1 2316 219 90 32 chr1 200038057 200038714 -82154950 + L2 LINE L2 2571 3307 -6 1450 274 53 41 chr1 200038936 200039496 -82154168 - MLT1L LTR MaLR -20 595 26 1801 211 120 20 chr1 200039496 200039955 -82153709 + MLT1D LTR MaLR 1 505 0 1450 274 53 41 chr1 200039955 200039982 -82153682 - MLT1L LTR MaLR -589 26 1 3273 39 0 0 chr1 200040066 200040429 -82153235 + L1PA3 LINE L1 5790 6152 -3 207 375 0 0 chr1 200042300 200042372 -82151292 - L2 LINE L2 0 3272 3201 203 374 11 0 chr1 200044461 200044552 -82149112 - L2 LINE L2 0 3313 3222 286 391 23 23 chr1 200044663 200044791 -82148873 - L2 LINE L2 -22 3250 3123 554 273 61 0 chr1 200044957 200045122 -82148542 + MIR SINE MIR 38 212 -50 416 250 189 18 chr1 200045120 200045284 -82148380 + MIR SINE MIR 44 235 -27 * 192 197 421 0 chr1 200045605 200045681 -82147983 + L2 LINE L2 3155 3262 -10 227 358 0 0 chr1 200047144 200047211 -82146453 + L2 LINE L2 3122 3188 -84 649 232 168 36 chr1 200047293 200047513 -82146151 + MIR SINE MIR 14 262 0 493 303 78 35 chr1 200047613 200047844 -82145820 + L3b LINE CR1 1224 1464 -119 2626 144 21 14 chr1 200050195 200050626 -82143038 - Tigger2a DNA MER2_type 0 434 1 680 271 55 35 chr1 200050628 200050827 -82142837 - MIR SINE MIR -25 237 35 512 275 203 5 chr1 200052797 200053004 -82140660 - MIR SINE MIR 0 262 15 253 160 0 0 chr1 200053210 200053260 -82140404 - L1P LINE L1 -839 5312 5263 4910 122 33 19 chr1 200053261 200054070 -82139594 + L1PB3 LINE L1 5327 6147 -7 1769 183 12 72 chr1 200054445 200054860 -82138804 + MLT1B LTR MaLR 1 390 0 243 266 0 16 chr1 200055023 200055087 -82138577 + L1MDa LINE L1 902 964 -5576 182 287 132 31 chr1 200056240 200056369 -82137295 - MIR3 SINE MIR -66 142 1 1355 168 90 4 chr1 200056625 200056893 -82136771 - L1MB4 LINE L1 0 6180 5890 1069 222 10 0 chr1 200056998 200057201 -82136463 - MIR SINE MIR -21 241 37 213 189 0 0 chr1 200057289 200057326 -82136338 + GA-rich Low_complexity Low_complexity 3 39 0 746 293 217 7 chr1 200057388 200057827 -82135837 + L2 LINE L2 2782 3313 0 453 269 105 53 chr1 200057832 200058155 -82135509 + L1ME4a LINE L1 5782 6121 0 5353 149 32 10 chr1 200060220 200061123 -82132541 + MER49 LTR ERV1 1 923 0 257 282 35 0 chr1 200063230 200063315 -82130349 + GA-rich Low_complexity Low_complexity 2 89 0 476 257 115 40 chr1 200063493 200063641 -82130023 - MER5A DNA MER1_type 0 189 31 1924 123 53 0 chr1 200064888 200065173 -82128491 + AluSx SINE Alu 3 302 -10 753 260 36 7 chr1 200065246 200065457 -82128207 + MIR SINE MIR 7 218 -44 253 268 43 0 chr1 200065486 200065556 -82128108 + MIR SINE MIR 102 173 -62 1115 76 0 0 chr1 200065786 200065931 -82127733 + L1PA8 LINE L1 6022 6166 -6 180 152 0 0 chr1 200065994 200066027 -82127637 + (TTG)n Simple_repeat Simple_repeat 3 35 0 309 267 86 17 chr1 200066232 200066348 -82127316 - MIR SINE MIR -21 241 118 570 259 77 61 chr1 200068025 200068272 -82125392 + MIR SINE MIR 2 252 -10 250 267 0 53 chr1 200069497 200069572 -82124092 + MIR SINE MIR 186 256 -6 545 149 9 0 chr1 200070178 200070292 -82123372 + G-rich Low_complexity Low_complexity 1 115 0 204 40 0 0 chr1 200070629 200070654 -82123010 + (CATA)n Simple_repeat Simple_repeat 3 27 0 201 278 100 22 chr1 200070902 200070992 -82122672 - MIR SINE MIR -50 212 116 577 303 26 5 chr1 200071196 200071391 -82122273 + MIR SINE MIR 51 249 -13 261 0 0 0 chr1 200071408 200071437 -82122227 + (CA)n Simple_repeat Simple_repeat 2 30 0 182 326 43 22 chr1 200071679 200071817 -82121847 - MIR SINE MIR -1 261 121 423 0 0 0 chr1 200071869 200071916 -82121748 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr1 200072010 200072034 -82121630 + (GA)n Simple_repeat Simple_repeat 2 25 0 280 301 84 14 chr1 200072035 200072178 -82121486 - MIR SINE MIR -7 255 103 185 200 73 55 chr1 200072366 200072421 -82121243 + MIR3 SINE MIR 102 157 -51 788 153 17 11 chr1 200073350 200073526 -82120138 + GA-rich Low_complexity Low_complexity 3 179 0 519 273 68 56 chr1 200073526 200073940 -82119724 + HAL1b LINE L1 49 467 -881 521 290 129 14 chr1 200074077 200074294 -82119370 + MIR SINE MIR 20 261 -1 2157 113 0 0 chr1 200075488 200075788 -82117876 - AluSq SINE Alu -11 302 3 1120 144 19 23 chr1 200077159 200077374 -82116290 + L1MA8 LINE L1 6075 6288 -3 189 0 0 0 chr1 200077651 200077672 -82115992 + (AATTG)n Simple_repeat Simple_repeat 3 23 0 849 144 7 0 chr1 200077698 200077837 -82115827 + AluJo SINE Alu 1 140 -172 1883 113 32 3 chr1 200077841 200078125 -82115539 - AluSx SINE Alu -19 293 2 1433 255 74 23 chr1 200078127 200078505 -82115159 + L1MC4a LINE L1 5445 5855 -1953 1144 238 35 52 chr1 200078505 200078849 -82114815 + MER58B DNA MER1_type 1 338 -3 1433 255 74 23 chr1 200078849 200078956 -82114708 + L1MC4a LINE L1 5855 5955 -1853 24 77 0 0 chr1 200079029 200079081 -82114583 + AT_rich Low_complexity Low_complexity 1 52 0 1846 152 43 3 chr1 200079187 200079509 -82114155 + MER47A DNA MER2_type 31 365 -1 667 258 35 23 chr1 200079547 200079803 -82113861 + L1ME LINE L1 5541 5799 -322 375 249 109 42 chr1 200080920 200080999 -82112665 - MIR3 SINE MIR -23 185 96 568 228 215 18 chr1 200080999 200081218 -82112446 + MIR SINE MIR 1 262 0 261 303 33 51 chr1 200081401 200081599 -82112065 - MIR SINE MIR -55 207 12 431 288 75 25 chr1 200083659 200083819 -82109845 + MIR SINE MIR 1 168 -94 1911 135 14 17 chr1 200083854 200084143 -82109521 - AluSc SINE Alu -19 290 3 41 98 0 0 chr1 200084208 200084259 -82109405 + GC_rich Low_complexity Low_complexity 1 51 0 1675 161 6 35 chr1 200084473 200084784 -82108880 + AluJo SINE Alu 1 302 -10 2115 108 0 3 chr1 200084843 200085149 -82108515 + AluSx SINE Alu 1 305 -7 2197 96 0 0 chr1 200085341 200085633 -82108031 + AluSg SINE Alu 1 292 -18 372 141 0 0 chr1 200085637 200085708 -82107956 + L1MC3 LINE L1 7715 7785 0 1919 110 13 40 chr1 200088591 200088892 -82104772 - AluSx SINE Alu -19 293 1 226 286 16 16 chr1 200089186 200089249 -82104415 - L2 LINE L2 -3 3269 3207 238 274 0 16 chr1 200089585 200089647 -82104017 + GA-rich Low_complexity Low_complexity 3 63 0 474 301 156 5 chr1 200090454 200090640 -82103024 + MIR SINE MIR 36 249 -13 388 223 217 19 chr1 200092315 200092472 -82101192 + MIR SINE MIR 50 237 -25 193 255 0 0 chr1 200092856 200092903 -82100761 - L2 LINE L2 0 3313 3267 2090 123 0 3 chr1 200093097 200093397 -82100267 - AluSg SINE Alu -11 299 1 388 303 41 16 chr1 200093656 200093778 -82099886 - MIR3 SINE MIR -10 198 74 394 172 0 97 chr1 200093795 200093888 -82099776 - MER63 DNA MER1_type 0 1062 979 478 143 0 0 chr1 200093895 200093965 -82099699 - MER63 DNA MER1_type -317 745 676 1812 180 21 40 chr1 200094738 200095110 -82098554 + MLT1A1 LTR MaLR 1 365 0 459 266 29 7 chr1 200095342 200095481 -82098183 + L1ME4a LINE L1 5963 6104 -17 394 353 38 0 chr1 200095658 200095791 -82097873 - L2 LINE L2 -1 3271 3134 906 346 118 37 chr1 200095931 200097009 -82096655 - L2 LINE L2 -688 2626 1462 446 267 9 35 chr1 200097229 200097345 -82096319 + L2 LINE L2 3200 3312 -1 744 230 92 32 chr1 200098520 200098737 -82094927 + MIR SINE MIR 33 262 0 218 167 0 0 chr1 200099174 200099210 -82094454 + (CA)n Simple_repeat Simple_repeat 2 37 0 311 320 36 64 chr1 200099809 200100028 -82093636 + MIR SINE MIR 47 259 -3 603 239 128 26 chr1 200100099 200100325 -82093339 + MIR SINE MIR 4 252 -10 1563 185 22 0 chr1 200100442 200100763 -82092901 + AluJo SINE Alu 1 327 0 2484 113 48 20 chr1 200101654 200102008 -82091656 - THE1B LTR MaLR 0 364 1 219 393 25 55 chr1 200102547 200102710 -82090954 - L2 LINE L2 -19 3253 3096 263 91 0 23 chr1 200102776 200102820 -82090844 + (GAAA)n Simple_repeat Simple_repeat 1 43 0 202 269 57 109 chr1 200102828 200103021 -82090643 - L2 LINE L2 -252 3020 2838 782 328 43 17 chr1 200103172 200103520 -82090144 + MLT1K LTR MaLR 3 359 -229 257 293 140 6 chr1 200103520 200103684 -82089980 - L2 LINE L2 -1 3312 3127 239 283 61 0 chr1 200103746 200103845 -82089819 - L2 LINE L2 -956 2358 2254 320 254 164 22 chr1 200105200 200105334 -82088330 - MIR3 SINE MIR -41 167 15 193 300 12 62 chr1 200105339 200105419 -82088245 + L2 LINE L2 3134 3209 -63 241 325 53 48 chr1 200106631 200106819 -82086845 + L1MC/D LINE L1 5692 5880 -1928 1670 170 42 3 chr1 200107486 200107769 -82085895 + AluJb SINE Alu 1 294 -18 39633 84 4 7 chr1 200108050 200114213 -82079451 + L1PA6 LINE L1 11 6154 0 1953 194 28 3 chr1 200114311 200114667 -82078997 - MLT1A1 LTR MaLR 0 365 1 248 195 221 106 chr1 200114673 200114717 -82078947 - MIR3 SINE MIR -49 159 121 1858 179 7 0 chr1 200114717 200115014 -82078650 + AluJb SINE Alu 1 299 -13 248 195 221 106 chr1 200115014 200115082 -82078582 - MIR3 SINE MIR -87 121 34 961 106 0 21 chr1 200115776 200115906 -82077758 + AluSg/x SINE Alu 175 303 -9 898 152 0 8 chr1 200115906 200116038 -82077626 + FLAM_C SINE Alu 1 131 -2 2078 113 31 0 chr1 200116068 200116360 -82077304 + AluSc SINE Alu 1 301 -8 867 252 33 0 chr1 200116670 200116884 -82076780 + MIR SINE MIR 2 222 -40 724 256 18 48 chr1 200116945 200117148 -82076516 - MIR SINE MIR -10 252 55 2415 60 3 0 chr1 200117148 200117433 -82076231 + AluY SINE Alu 1 286 -25 724 256 18 48 chr1 200117433 200117456 -82076208 - MIR SINE MIR -207 55 33 1286 286 104 37 chr1 200117547 200118551 -82075113 - L2 LINE L2 -2 3311 714 365 241 5 141 chr1 200118566 200118629 -82075035 - MER5B DNA MER1_type -6 172 102 2027 128 10 3 chr1 200118629 200118926 -82074738 + AluSx SINE Alu 6 304 -8 365 241 5 141 chr1 200118926 200119061 -82074603 - MER5B DNA MER1_type -76 102 1 * 384 261 149 37 chr1 200119061 200119309 -82074355 - L2 LINE L2 -2610 704 427 188 292 221 0 chr1 200119351 200119464 -82074200 - L2 LINE L2 -3029 285 148 1885 236 31 13 chr1 200119581 200120038 -82073626 - MLT1C LTR MaLR -2 465 1 420 314 55 10 chr1 200120859 200121022 -82072642 - MIR3 SINE MIR -52 156 17 213 328 0 17 chr1 200122335 200122393 -82071271 - L2 LINE L2 -66 3206 3150 533 310 142 4 chr1 200122433 200122659 -82071005 - MIR SINE MIR -1 261 5 347 263 127 0 chr1 200123463 200123581 -82070083 - MIR3 SINE MIR -61 147 15 190 353 8 34 chr1 200123959 200124078 -82069586 - L3b LINE CR1 -346 1237 1122 307 270 95 16 chr1 200124355 200124481 -82069183 - MIR SINE MIR -50 212 77 825 321 128 34 chr1 200124679 200125610 -82068054 + L2 LINE L2 2148 3163 -109 330 248 131 7 chr1 200125656 200125801 -82067863 + L1MC4a LINE L1 5748 5910 -1898 2280 103 3 0 chr1 200126335 200126635 -82067029 + AluSx SINE Alu 1 301 -11 2510 121 45 36 chr1 200128166 200128384 -82065280 - L1MB3 LINE L1 -1 6182 5967 1430 137 59 0 chr1 200128384 200128603 -82065061 - MER46A DNA MER2_type -4 232 1 2510 121 45 36 chr1 200128603 200128832 -82064832 - L1MB3 LINE L1 -216 5967 5731 257 317 83 33 chr1 200128885 200129005 -82064659 - L2 LINE L2 -4 3268 3143 452 251 206 23 chr1 200129025 200129244 -82064420 - MIR SINE MIR -3 259 1 227 324 71 55 chr1 200129539 200129721 -82063943 - L2 LINE L2 -528 2786 2602 534 160 217 0 chr1 200129822 200129928 -82063736 - MER94 DNA DNA 0 134 6 319 273 86 8 chr1 200129954 200130082 -82063582 - L2 LINE L2 -844 2470 2333 4934 149 36 5 chr1 200130628 200131907 -82061757 + L1MC2 LINE L1 4749 6050 -294 471 303 148 0 chr1 200132012 200132167 -82061497 + MER5A DNA MER1_type 9 186 -3 624 306 60 58 chr1 200132167 200132210 -82061454 + L1ME2 LINE L1 5262 5303 -861 1531 157 25 85 chr1 200132210 200132529 -82061135 + AluJo SINE Alu 1 300 -12 624 306 60 58 chr1 200132529 200133087 -82060577 + L1ME2 LINE L1 5303 5864 -300 311 336 72 40 chr1 200132600 200133145 -82060519 + L1MB4 LINE L1 5367 5928 -246 * 16178 168 22 11 chr1 200134725 200138866 -82054798 - L1PB2 LINE L1 -2 6865 2684 747 188 55 24 chr1 200138982 200139147 -82054517 + L1ME1 LINE L1 5440 5609 -555 2581 186 58 11 chr1 200139590 200140152 -82053512 + L1ME1 LINE L1 5593 6334 0 26 0 0 0 chr1 200140447 200140473 -82053191 + AT_rich Low_complexity Low_complexity 1 26 0 2108 107 7 0 chr1 200140473 200140773 -82052891 + AluSq SINE Alu 1 302 0 489 210 48 16 chr1 200141693 200141817 -82051847 - MIR SINE MIR -49 213 86 292 278 104 9 chr1 200141856 200141971 -82051693 - L2 LINE L2 -13 3259 3134 652 285 83 13 chr1 200142538 200142766 -82050898 + MIR SINE MIR 19 262 0 272 304 58 29 chr1 200143423 200143561 -82050103 - MIR3 SINE MIR -46 162 21 4693 129 41 3 chr1 200144708 200145438 -82048226 + L1MB2 LINE L1 5413 6170 -1 530 170 20 0 chr1 200145468 200145568 -82048096 + L1MB4 LINE L1 5946 6047 -133 * 573 181 0 9 chr1 200145555 200145671 -82047993 + L1MB3 LINE L1 6069 6183 0 262 237 62 0 chr1 200145740 200145837 -82047827 - L1MC4 LINE L1 -1300 6742 6640 862 177 0 0 chr1 200145919 200146060 -82047604 + AluJo SINE Alu 1 141 -171 1394 96 14 14 chr1 200146060 200146269 -82047395 + AluY SINE Alu 94 302 -9 852 160 0 83 chr1 200146272 200146305 -82047359 + AluJo SINE Alu 137 171 -141 2982 85 25 0 chr1 200146305 200146671 -82046993 + THE1C LTR MaLR 1 375 0 852 160 0 83 chr1 200146671 200146806 -82046858 + AluJo SINE Alu 171 291 -21 205 233 0 0 chr1 200148557 200148600 -82045064 - MIR SINE MIR 0 262 220 270 220 19 20 chr1 200148746 200148839 -82044825 + MIR SINE MIR 10 106 -102 894 226 44 40 chr1 200148845 200149093 -82044571 - MIR SINE MIR -6 256 8 2290 98 3 3 chr1 200149159 200149456 -82044208 + AluSg SINE Alu 1 297 -13 2281 111 0 0 chr1 200149462 200149759 -82043905 + AluSg SINE Alu 1 297 -13 353 306 53 12 chr1 200149888 200150058 -82043606 - MIR SINE MIR -73 189 13 357 307 26 47 chr1 200150392 200150584 -82043080 + MIR SINE MIR 10 197 -65 23 0 0 0 chr1 200150736 200150759 -82042905 + AT_rich Low_complexity Low_complexity 1 23 0 233 291 146 7 chr1 200151036 200151187 -82042477 + L2 LINE L2 2253 2424 -890 258 251 286 12 chr1 200151254 200151425 -82042239 - MIR SINE MIR -25 237 20 370 330 64 31 chr1 200151502 200151972 -82041692 + L2 LINE L2 2572 3051 -221 733 291 117 22 chr1 200152039 200152397 -82041267 - L2 LINE L2 0 3313 2922 186 43 0 0 chr1 200153462 200153485 -82040179 + (GGGAA)n Simple_repeat Simple_repeat 4 26 0 238 163 0 0 chr1 200153940 200153983 -82039681 + L1MB8 LINE L1 6127 6169 -9 191 333 63 0 chr1 200155455 200155518 -82038146 + L2 LINE L2 3122 3188 -84 207 0 0 0 chr1 200155968 200155991 -82037673 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2202 101 3 3 chr1 200155993 200156280 -82037384 - AluSx SINE Alu -25 287 1 508 274 8 0 chr1 200156444 200156568 -82037096 - L2 LINE L2 0 3272 3148 263 332 96 50 chr1 200156872 200157249 -82036415 - L2 LINE L2 -1 3312 2919 2328 95 0 10 chr1 200157277 200157573 -82036091 - AluSg SINE Alu -17 293 1 205 384 0 0 chr1 200157580 200157653 -82036011 - L2 LINE L2 -527 2787 2715 605 168 99 8 chr1 200157784 200157834 -82035830 + MER5A DNA MER1_type 5 49 -140 1979 142 40 17 chr1 200157834 200158136 -82035528 + AluJb SINE Alu 1 309 -3 605 168 99 8 chr1 200158136 200158216 -82035448 + MER5A DNA MER1_type 49 147 -42 1843 127 68 22 chr1 200158223 200158545 -82035119 + MER1B DNA MER1_type 1 337 0 426 264 28 0 chr1 200158691 200158797 -82034867 - L2 LINE L2 0 3313 3205 937 120 38 25 chr1 200160299 200160457 -82033207 - L1PA16 LINE L1 0 6166 6007 339 89 0 0 chr1 200160515 200160560 -82033104 + Alu SINE Alu 11 55 -247 719 156 78 0 chr1 200160560 200160688 -82032976 + AluJo/FRAM SINE Alu 144 281 -31 197 108 27 0 chr1 200160694 200160731 -82032933 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1693 175 7 0 chr1 200160797 200161083 -82032581 - AluJb SINE Alu -21 291 4 305 220 17 0 chr1 200161295 200161354 -82032310 + L2 LINE L2 3203 3262 -10 254 286 71 24 chr1 200161591 200161717 -82031947 + MIR3 SINE MIR 42 173 -35 585 137 42 0 chr1 200162160 200162255 -82031409 + AluJ/FLAM SINE Alu 3 101 -211 1550 152 111 72 chr1 200162257 200162690 -82030974 + LTR7 LTR ERV1 1 450 0 1836 205 60 43 chr1 200162690 200163203 -82030461 + HERVH LTR ERV1 1 522 -7191 * 2571 180 18 39 chr1 200163173 200163733 -82029931 + HERVH LTR ERV1 800 1347 -6366 271 143 41 0 chr1 200163754 200163803 -82029861 + L1M4 LINE L1 5168 5218 -928 319 114 0 0 chr1 200163903 200163947 -82029717 - MER11B LTR ERVK -1192 44 1 2277 158 69 2 chr1 200164238 200164631 -82029033 - MSTA LTR MaLR -9 419 1 1145 201 76 90 chr1 200164714 200165147 -82028517 + L1MEc LINE L1 1643 2069 -4327 5586 150 45 4 chr1 200165155 200166201 -82027463 - L1PA15 LINE L1 0 6165 5062 8002 137 2 16 chr1 200166339 200167613 -82026051 + HERVH LTR ERV1 1740 2995 -4718 2896 137 2 0 chr1 200167592 200168039 -82025625 + HERVH LTR ERV1 3140 3587 -4126 * 6948 131 9 9 chr1 200168033 200169281 -82024383 + HERVH LTR ERV1 3804 4991 -2287 2784 98 9 12 chr1 200169261 200169680 -82023984 + HERVH LTR ERV1 7296 7713 0 * 1386 140 90 123 chr1 200169680 200170145 -82023519 + LTR7 LTR ERV1 1 450 0 1338 161 0 0 chr1 200170146 200170357 -82023307 + AluY SINE Alu 101 311 0 288 297 148 0 chr1 200171477 200171578 -82022086 + L2 LINE L2 3139 3254 -18 671 261 40 11 chr1 200171961 200172155 -82021509 - MIR3 SINE MIR -1 207 6 1864 148 0 33 chr1 200172297 200172602 -82021062 + AluJo SINE Alu 1 295 -17 533 294 43 5 chr1 200172663 200172847 -82020817 - MIR SINE MIR -48 214 24 449 268 29 91 chr1 200173644 200173790 -82019874 + MIR SINE MIR 1 155 -107 2162 117 10 7 chr1 200173790 200174098 -82019566 + AluSg SINE Alu 1 309 -1 449 268 29 91 chr1 200174098 200174109 -82019555 + MIR SINE MIR 155 165 -97 2399 90 3 0 chr1 200174109 200174408 -82019256 + AluSp SINE Alu 1 300 -13 449 268 29 91 chr1 200174408 200174458 -82019206 + MIR SINE MIR 165 196 -66 271 250 79 67 chr1 200174833 200174997 -82018667 + MIR3 SINE MIR 11 176 -32 489 259 0 9 chr1 200175125 200175241 -82018423 - L2 LINE L2 -2 3311 3197 238 179 0 0 chr1 200175750 200175789 -82017875 - MIR SINE MIR -70 192 154 405 0 0 0 chr1 200176233 200176278 -82017386 + (TG)n Simple_repeat Simple_repeat 2 46 0 328 320 72 39 chr1 200176465 200176618 -82017046 + L2 LINE L2 3107 3264 -8 225 0 0 0 chr1 200177656 200177681 -82015983 + (A)n Simple_repeat Simple_repeat 1 25 0 221 308 62 77 chr1 200177964 200178094 -82015570 + L2 LINE L2 3145 3272 0 2129 137 0 0 chr1 200178259 200178583 -82015081 + AluSx SINE Alu 1 324 0 200 86 29 0 chr1 200179149 200179184 -82014480 + (TC)n Simple_repeat Simple_repeat 1 36 0 223 337 105 6 chr1 200179308 200179480 -82014184 + MER5A DNA MER1_type 1 189 0 23 0 0 0 chr1 200179922 200179945 -82013719 + AT_rich Low_complexity Low_complexity 1 23 0 484 273 132 62 chr1 200180237 200180750 -82012914 - L2 LINE L2 -3 3269 2723 1007 121 0 0 chr1 200181169 200181318 -82012346 + L1MA5A LINE L1 6146 6294 -3 231 114 0 0 chr1 200182884 200182919 -82010745 + (TC)n Simple_repeat Simple_repeat 2 36 0 738 261 28 69 chr1 200183345 200183663 -82010001 - L2 LINE L2 -13 3300 2996 677 213 0 0 chr1 200183665 200183787 -82009877 + FLAM_A SINE Alu 1 122 -20 1029 285 181 9 chr1 200183803 200184332 -82009332 - L2 LINE L2 -302 3011 2396 247 267 83 58 chr1 200184380 200184500 -82009164 - MER5A DNA MER1_type -3 186 64 192 77 0 0 chr1 200186318 200186344 -82007320 + (T)n Simple_repeat Simple_repeat 1 26 0 480 48 0 0 chr1 200186565 200186628 -82007036 + (TA)n Simple_repeat Simple_repeat 2 64 0 1978 146 3 10 chr1 200187400 200187709 -82005955 + AluJo SINE Alu 2 308 -4 949 251 25 4 chr1 200187711 200187954 -82005710 - MIR SINE MIR 0 262 15 4800 160 18 29 chr1 200187960 200188447 -82005217 - MER6 DNA MER2_type 0 865 389 1572 180 0 45 chr1 200188447 200188736 -82004928 - AluJo SINE Alu -36 276 1 4800 160 18 29 chr1 200188736 200189121 -82004543 - MER6 DNA MER2_type -476 389 2 1704 175 14 21 chr1 200189602 200189893 -82003771 + AluJo SINE Alu 1 289 -23 443 336 99 25 chr1 200189893 200190086 -82003578 - L2 LINE L2 -618 2696 2519 1592 171 7 31 chr1 200190086 200190378 -82003286 + AluJo SINE Alu 6 290 -22 443 336 99 25 chr1 200190378 200190538 -82003126 - L2 LINE L2 -795 2519 2317 1728 153 91 16 chr1 200190538 200190846 -82002818 - MER1B DNA MER1_type -6 333 3 686 327 116 14 chr1 200190893 200191593 -82002071 - L2 LINE L2 -1017 2297 1527 2207 104 13 0 chr1 200192088 200192395 -82001269 - AluY SINE Alu 0 311 1 403 262 148 13 chr1 200192465 200192614 -82001050 + MIR SINE MIR 15 183 -79 474 18 0 0 chr1 200192933 200192988 -82000676 + (TG)n Simple_repeat Simple_repeat 2 56 0 1809 230 69 84 chr1 200193068 200193616 -82000048 - MLT1F LTR MaLR -2 540 1 296 330 0 0 chr1 200193988 200194085 -81999579 - MIR SINE MIR -115 147 51 190 224 121 0 chr1 200194135 200194193 -81999471 + MIR SINE MIR 198 262 0 366 270 209 25 chr1 200194560 200194756 -81998908 + MIR SINE MIR 20 251 -11 265 287 66 41 chr1 200194928 200195050 -81998614 + L2 LINE L2 3138 3262 -10 21 0 0 0 chr1 200195302 200195323 -81998341 + AT_rich Low_complexity Low_complexity 1 21 0 1473 243 116 19 chr1 200196975 200197213 -81996451 + L2 LINE L2 2007 2221 -1093 2247 130 19 30 chr1 200197213 200197581 -81996083 - THE1B LTR MaLR 0 364 1 1473 243 116 19 chr1 200197581 200197910 -81995754 + L2 LINE L2 2221 2629 -685 1394 111 0 29 chr1 200198062 200198269 -81995395 - AluSg/x SINE Alu 0 312 112 405 101 64 0 chr1 200198269 200198351 -81995313 - Alu SINE Alu -246 55 1 418 314 60 5 chr1 200198351 200198536 -81995128 + L2 LINE L2 3119 3313 0 1824 182 0 13 chr1 200198821 200199129 -81994535 - AluJo SINE Alu -6 306 3 1513 204 26 23 chr1 200200090 200200442 -81993222 + MLT1A1 LTR MaLR 13 365 0 281 267 190 17 chr1 200200726 200200842 -81992822 - L2 LINE L2 0 3272 3137 903 151 0 76 chr1 200200964 200201136 -81992528 - FRAM SINE Alu -3 163 5 522 331 118 55 chr1 200201451 200202321 -81991343 - L2 LINE L2 -551 2763 1839 2273 111 0 0 chr1 200202587 200202885 -81990779 - AluSc SINE Alu -11 298 1 813 286 131 41 chr1 200202947 200203193 -81990471 + L1ME3 LINE L1 4013 4235 -1911 2325 104 0 0 chr1 200203193 200203491 -81990173 - AluSc SINE Alu -11 298 1 813 286 131 41 chr1 200203491 200203565 -81990099 + L1ME3 LINE L1 4235 4301 -1845 2110 141 0 0 chr1 200203565 200203877 -81989787 + AluSx SINE Alu 1 312 0 813 286 131 41 chr1 200203877 200204538 -81989126 + L1ME3 LINE L1 4301 5084 -1062 387 141 0 0 chr1 200204600 200204664 -81989000 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 1635 159 20 44 chr1 200204664 200204960 -81988704 - AluJb SINE Alu -23 289 1 676 262 51 66 chr1 200205005 200205142 -81988522 + L1ME3 LINE L1 5211 5348 -814 2031 158 6 6 chr1 200205142 200205453 -81988211 + AluJo SINE Alu 1 311 -1 676 262 51 66 chr1 200205453 200205953 -81987711 + L1ME3 LINE L1 5348 5857 -305 411 21 0 0 chr1 200205989 200206037 -81987627 + (TA)n Simple_repeat Simple_repeat 2 49 0 217 327 35 26 chr1 200206097 200206210 -81987454 - L2 LINE L2 -1489 1825 1712 988 182 0 0 chr1 200206256 200206410 -81987254 - FRAM SINE Alu -24 152 1 306 266 19 32 chr1 200206427 200206581 -81987083 - L1MC4 LINE L1 -27 8015 7864 1873 131 13 58 chr1 200206606 200206918 -81986746 - AluSx SINE Alu -14 298 1 331 333 113 27 chr1 200207116 200207375 -81986289 - L2 LINE L2 -1887 1427 1131 1817 163 46 30 chr1 200207375 200207744 -81985920 + THE1C LTR MaLR 1 375 0 331 333 113 27 chr1 200207744 200207820 -81985844 - L2 LINE L2 -2183 1131 1063 23 0 0 0 chr1 200207828 200207851 -81985813 + AT_rich Low_complexity Low_complexity 1 23 0 2108 142 3 0 chr1 200207854 200208149 -81985515 - AluSx SINE Alu -16 296 1 2183 29 0 0 chr1 200208686 200208931 -81984733 - AluY SINE Alu -10 301 57 440 315 109 63 chr1 200208956 200209451 -81984213 + L2 LINE L2 386 903 -2411 2363 65 0 36 chr1 200209756 200210062 -81983602 + AluY SINE Alu 1 295 -16 344 285 77 39 chr1 200211546 200211676 -81981988 + MIR3 SINE MIR 20 154 -54 2290 62 0 43 chr1 200211890 200212194 -81981470 + AluY SINE Alu 1 291 -20 347 319 132 61 chr1 200212351 200212730 -81980934 - L2 LINE L2 -341 2973 2568 2031 136 3 0 chr1 200213327 200213622 -81980042 + AluJb SINE Alu 1 296 -16 261 0 0 0 chr1 200213653 200213682 -81979982 + (TG)n Simple_repeat Simple_repeat 1 29 0 1923 166 0 16 chr1 200214546 200214859 -81978805 - AluJo SINE Alu -4 308 1 6878 48 14 38 chr1 200215017 200216221 -81977443 + L1PA8 LINE L1 4988 6169 -3 231 36 0 0 chr1 200216607 200216635 -81977029 + (CAAG)n Simple_repeat Simple_repeat 3 30 0 261 232 49 24 chr1 200216798 200216880 -81976784 + MIR3 SINE MIR 119 202 -6 416 122 0 14 chr1 200217957 200218031 -81975633 + (CCG)n Simple_repeat Simple_repeat 1 73 0 654 297 6 11 chr1 200219956 200220138 -81973526 + MIR3 SINE MIR 21 201 -7 225 0 0 0 chr1 200220662 200220687 -81972977 + (TG)n Simple_repeat Simple_repeat 2 26 0 372 347 57 11 chr1 200221451 200221627 -81972037 + MIR3 SINE MIR 21 204 -4 706 188 100 6 chr1 200223946 200223976 -81969688 - MER46C DNA MER2_type -152 186 160 2212 91 10 7 chr1 200223976 200224272 -81969392 + AluSx SINE Alu 1 297 -15 706 188 100 6 chr1 200224272 200224411 -81969253 - MER46C DNA MER2_type -178 160 1 2180 100 6 32 chr1 200224531 200224842 -81968822 + AluSx SINE Alu 1 303 -9 559 233 169 72 chr1 200226506 200226612 -81967052 - L1ME4a LINE L1 -3 6118 6024 702 136 0 199 chr1 200226612 200226818 -81966846 - FRAM SINE Alu -1 165 1 559 233 169 72 chr1 200226818 200226990 -81966674 - L1ME4a LINE L1 -97 6024 5813 1184 239 151 17 chr1 200227493 200228036 -81965628 - L1MC4a LINE L1 -1931 5877 5262 519 316 54 6 chr1 200228365 200228682 -81964982 - L1MC4a LINE L1 -1074 5072 4741 256 210 0 16 chr1 200228775 200228837 -81964827 - L1ME4a LINE L1 -426 5695 5635 1597 182 32 23 chr1 200229965 200230273 -81963391 - AluJb SINE Alu -1 311 1 3934 142 60 20 chr1 200231754 200232572 -81961092 - L1MB4 LINE L1 0 6180 5330 1096 262 12 0 chr1 200232698 200232946 -81960718 - MIR SINE MIR -1 261 11 592 214 16 8 chr1 200233559 200233685 -81959979 - FLAM_A SINE Alu -2 140 14 1707 194 13 3 chr1 200234036 200234335 -81959329 + AluJo SINE Alu 1 302 -10 441 288 47 19 chr1 200234358 200234570 -81959094 - L1ME1 LINE L1 -27 6139 5922 965 195 5 5 chr1 200234579 200234779 -81958885 + MER2 DNA MER2_type 7 206 -139 538 88 0 82 chr1 200234788 200234959 -81958705 + (TA)n Simple_repeat Simple_repeat 2 158 0 1468 128 4 39 chr1 200234959 200235193 -81958471 - AluSx SINE Alu -86 226 1 298 236 83 0 chr1 200235247 200235319 -81958345 + MER2 DNA MER2_type 268 345 0 973 182 65 4 chr1 200235319 200235550 -81958114 - L1ME1 LINE L1 -246 5920 5676 1095 141 6 0 chr1 200235550 200235706 -81957958 - AluJb SINE Alu -155 157 1 381 185 62 14 chr1 200235707 200235811 -81957853 - L1ME1 LINE L1 -564 5602 5497 1614 219 120 39 chr1 200235837 200236017 -81957647 - L1ME4a LINE L1 -622 5544 5380 2204 129 3 0 chr1 200236017 200236326 -81957338 - AluSx SINE Alu -2 310 1 1614 219 120 39 chr1 200236326 200236567 -81957097 - L1ME4a LINE L1 -786 5380 5160 2400 93 0 0 chr1 200236567 200236867 -81956797 + AluSg SINE Alu 1 300 -10 2870 23 0 25 chr1 200236868 200237222 -81956442 + L1PA2 LINE L1 5811 6155 0 1614 219 120 39 chr1 200237222 200237631 -81956033 - L1ME4a LINE L1 -1005 5161 4652 815 203 27 7 chr1 200237631 200237779 -81955885 - AluJo SINE Alu -37 275 125 333 177 0 0 chr1 200237779 200237858 -81955806 + (TG)n Simple_repeat Simple_repeat 1 79 0 620 235 0 0 chr1 200237858 200237977 -81955687 - AluJo SINE Alu -191 121 3 3922 221 72 36 chr1 200237981 200238357 -81955307 - L1ME4a LINE L1 -1496 4650 4289 201 39 0 0 chr1 200238357 200238383 -81955281 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3922 221 72 36 chr1 200238383 200238819 -81954845 - L1ME4a LINE L1 -1857 4289 3870 2403 63 0 3 chr1 200238819 200239118 -81954546 - AluY SINE Alu -13 298 1 3922 221 72 36 chr1 200239118 200239690 -81953974 - L1ME4a LINE L1 -2276 3870 3215 626 307 177 36 chr1 200239695 200240293 -81953371 - L2 LINE L2 -195 3077 2404 217 338 0 0 chr1 200240359 200240427 -81953237 + L2 LINE L2 2992 3059 -213 2027 88 33 4 chr1 200240898 200241197 -81952467 - AluY SINE Alu 0 307 1 1953 186 5 19 chr1 200241791 200242161 -81951503 + MLT1A1 LTR MaLR 1 365 0 2056 129 10 3 chr1 200242179 200242473 -81951191 + AluSq SINE Alu 1 296 -17 1758 97 26 11 chr1 200242507 200242775 -81950889 - Charlie3 DNA MER1_type -4 2706 2435 * 15737 90 4 10 chr1 200242771 200243153 -81950511 - Charlie3 DNA MER1_type -470 2236 1853 2482 87 0 0 chr1 200243153 200243463 -81950201 - AluSq SINE Alu -3 310 1 15737 90 4 10 chr1 200243463 200245284 -81948380 - Charlie3 DNA MER1_type -853 1853 46 247 250 211 0 chr1 200245625 200245701 -81947963 - MIR SINE MIR -79 183 92 2131 115 10 3 chr1 200245785 200246081 -81947583 - AluSx SINE Alu -14 298 1 347 263 58 63 chr1 200247323 200247513 -81946151 + MER5A DNA MER1_type 1 189 0 1854 147 4 0 chr1 200248001 200248267 -81945397 - AluJb SINE Alu -45 267 1 1043 171 18 40 chr1 200248540 200248762 -81944902 + MER20 DNA MER1_type 3 219 0 984 157 0 0 chr1 200249669 200249828 -81943836 - MSTB1 LTR MaLR 0 432 274 668 293 99 5 chr1 200250282 200250504 -81943160 - MIR SINE MIR -1 261 19 180 278 0 125 chr1 200250513 200250657 -81943007 - L2 LINE L2 -73 3240 3115 215 269 19 0 chr1 200252332 200252384 -81941280 - MIR3 SINE MIR -28 180 128 507 269 64 13 chr1 200252569 200252725 -81940939 + MIR SINE MIR 32 195 -67 3769 205 43 49 chr1 200252815 200253210 -81940454 - L1MB8 LINE L1 0 6178 5782 213 39 0 0 chr1 200253210 200253236 -81940428 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 3769 205 43 49 chr1 200253236 200254190 -81939474 - L1MB8 LINE L1 -396 5782 4835 2388 52 0 0 chr1 200255086 200255377 -81938287 + AluY SINE Alu 20 310 -1 1653 149 3 51 chr1 200255519 200255814 -81937850 - AluJo SINE Alu -31 281 1 256 396 0 10 chr1 200256031 200256132 -81937532 - MIR SINE MIR -160 102 3 186 155 0 52 chr1 200256301 200256359 -81937305 + CT-rich Low_complexity Low_complexity 1 55 0 1300 170 101 56 chr1 200256362 200256650 -81937014 - AluJo SINE Alu -1 301 1 2275 104 13 0 chr1 200257060 200257358 -81936306 - AluSx SINE Alu -10 302 1 22 0 0 0 chr1 200257779 200257801 -81935863 + AT_rich Low_complexity Low_complexity 1 22 0 1478 196 90 19 chr1 200258308 200258619 -81935045 - MLT1F1 LTR MaLR -8 559 227 989 145 0 0 chr1 200258628 200258773 -81934891 + AluJb SINE Alu 160 304 -8 5639 129 66 6 chr1 200258773 200259682 -81933982 + HSMAR2 DNA Mariner 339 1302 0 207 0 0 0 chr1 200259787 200259810 -81933854 + (A)n Simple_repeat Simple_repeat 1 23 0 2090 117 19 48 chr1 200259940 200260315 -81933349 - THE1B LTR MaLR 0 364 1 385 283 194 22 chr1 200260544 200260724 -81932940 + MIR SINE MIR 2 212 -50 2176 122 0 3 chr1 200260767 200261079 -81932585 + AluSx SINE Alu 1 311 -1 204 317 109 29 chr1 200261160 200261366 -81932298 - L2 LINE L2 -310 2962 2737 251 262 66 0 chr1 200262815 200262876 -81930788 + MIR SINE MIR 79 143 -119 337 250 57 40 chr1 200262886 200263010 -81930654 + HsTC2 DNA Tc2 1 126 -1772 458 271 39 0 chr1 200263056 200263185 -81930479 + MIR SINE MIR 129 262 0 23 33 0 0 chr1 200263214 200263244 -81930420 + AT_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr1 200263922 200263951 -81929713 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 254 119 0 24 chr1 200264417 200264459 -81929205 - MER106B DNA MER1_type 0 1059 1019 2834 161 96 9 chr1 200264469 200265051 -81928613 - L1MC2 LINE L1 0 6344 5712 2081 132 76 11 chr1 200265114 200265476 -81928188 - MSTB LTR MaLR 0 414 41 273 57 0 0 chr1 200265476 200265511 -81928153 + (T)n Simple_repeat Simple_repeat 1 35 0 2173 103 9 18 chr1 200265511 200265840 -81927824 - LTR17 LTR ERV1 -454 326 1 2395 48 0 0 chr1 200265840 200266132 -81927532 - HERV17 LTR ERV1 0 8626 8335 306 51 0 0 chr1 200266122 200266161 -81927503 - HERV17 LTR ERV1 -1078 7548 7510 * 9785 56 1 0 chr1 200266157 200267353 -81926311 - HERV17 LTR ERV1 -1479 7147 5951 359 175 0 0 chr1 200267353 200267410 -81926254 - MSTB LTR MaLR -369 57 1 204 145 97 0 chr1 200267433 200267495 -81926169 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 563 246 58 0 chr1 200267540 200267678 -81925986 - MER106A DNA MER1_type -90 146 1 297 278 31 0 chr1 200267782 200267879 -81925785 + L1MC4a LINE L1 5827 5926 -1882 365 255 176 51 chr1 200268334 200268589 -81925075 + L2 LINE L2 1784 2070 -1244 21 0 0 0 chr1 200268714 200268735 -81924929 + AT_rich Low_complexity Low_complexity 1 21 0 221 333 123 0 chr1 200268735 200268849 -81924815 + L2 LINE L2 3172 3299 -14 296 162 81 14 chr1 200269873 200269947 -81923717 - MLT1J LTR MaLR 0 511 433 554 284 95 58 chr1 200269978 200270337 -81923327 - MLT1J LTR MaLR -139 372 1 1926 129 34 3 chr1 200271502 200271797 -81921867 + AluSx SINE Alu 1 304 -8 2166 105 0 22 chr1 200272083 200272396 -81921268 + AluSx SINE Alu 1 306 -6 1618 189 18 0 chr1 200272729 200273039 -81920625 - AluJb SINE Alu 0 315 1 229 304 0 0 chr1 200273269 200273325 -81920339 + CT-rich Low_complexity Low_complexity 4 59 0 1913 129 32 0 chr1 200274497 200274777 -81918887 - AluSx SINE Alu -19 293 5 2805 191 54 33 chr1 200274975 200275417 -81918247 - MER82 DNA MER2_type -7 646 185 2032 119 3 14 chr1 200275417 200275725 -81917939 + AluSx SINE Alu 1 305 0 2805 191 54 33 chr1 200275725 200275914 -81917750 - MER82 DNA MER2_type -468 185 1 1033 240 10 45 chr1 200275919 200276211 -81917453 + MLT1F LTR MaLR 1 282 -260 1086 253 72 17 chr1 200276345 200276808 -81916856 + MER21B LTR ERV1 98 629 -234 1196 85 0 0 chr1 200276809 200276986 -81916678 + AluSc SINE Alu 130 306 0 1547 230 102 38 chr1 200277002 200277588 -81916076 - L1MC5 LINE L1 -46 7915 7292 3065 200 71 43 chr1 200277592 200278134 -81915530 - L1MB7 LINE L1 -2 6182 5657 2136 107 0 7 chr1 200278134 200278433 -81915231 - AluSq SINE Alu -16 297 1 1623 191 0 10 chr1 200278440 200278744 -81914920 - AluJo SINE Alu -11 301 1 3065 200 71 43 chr1 200278744 200279007 -81914657 - L1MB7 LINE L1 -532 5652 5346 2163 104 3 0 chr1 200279130 200279418 -81914246 - AluSp SINE Alu -24 289 1 24 0 0 0 chr1 200279622 200279646 -81914018 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 200279758 200279780 -81913884 + AT_rich Low_complexity Low_complexity 1 22 0 514 296 194 5 chr1 200282532 200282748 -81910916 + MIR SINE MIR 6 262 0 449 292 219 0 chr1 200282741 200282933 -81910731 + MIR SINE MIR 29 262 0 * 1691 124 93 0 chr1 200283942 200284227 -81909437 + AluSx SINE Alu 1 309 0 651 63 42 0 chr1 200284349 200284444 -81909220 - L1PA6 LINE L1 0 6154 6056 2310 103 0 0 chr1 200284649 200284961 -81908703 + AluSq SINE Alu 2 313 0 3742 160 79 30 chr1 200285799 200286591 -81907073 - L1MB7 LINE L1 -53 6131 5295 2145 72 14 4 chr1 200286591 200286912 -81906752 - AluY SINE Alu 0 324 1 3742 160 79 30 chr1 200286912 200286944 -81906720 - L1MB7 LINE L1 -889 5295 5266 539 52 103 0 chr1 200286944 200287099 -81906565 + (TA)n Simple_repeat Simple_repeat 2 172 0 318 96 81 7 chr1 200287114 200287250 -81906414 + (TA)n Simple_repeat Simple_repeat 1 146 0 1958 125 29 0 chr1 200287250 200287529 -81906135 - AluSx SINE Alu -25 287 1 2688 225 76 18 chr1 200287530 200287615 -81906049 - L1MB7 LINE L1 -865 5281 5202 2009 133 10 0 chr1 200287615 200287908 -81905756 - AluSg SINE Alu -9 301 6 2688 225 76 18 chr1 200287908 200288668 -81904996 - L1MB7 LINE L1 -944 5202 4387 784 129 0 0 chr1 200288678 200288802 -81904862 + L1MC4 LINE L1 7919 8042 0 384 22 0 0 chr1 200289129 200289174 -81904490 + (TG)n Simple_repeat Simple_repeat 2 46 0 369 0 0 0 chr1 200289473 200289514 -81904150 + (TG)n Simple_repeat Simple_repeat 2 42 0 1058 180 32 0 chr1 200289632 200289821 -81903843 - MER2 DNA MER2_type -150 195 1 321 291 0 0 chr1 200289831 200289917 -81903747 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 1669 159 66 3 chr1 200289925 200290226 -81903438 - MER2 DNA MER2_type -25 320 1 367 285 0 24 chr1 200290378 200290501 -81903163 - MIR3 SINE MIR -8 200 81 777 204 6 49 chr1 200292152 200292314 -81901350 - Tigger2 DNA MER2_type 0 2718 2564 * 1066 174 5 46 chr1 200292313 200292532 -81901132 - Tigger2 DNA MER2_type -2508 210 1 22 0 0 0 chr1 200294995 200295017 -81898647 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 200295390 200295412 -81898252 + AT_rich Low_complexity Low_complexity 1 22 0 2681 202 21 10 chr1 200297125 200297708 -81895956 - MER20B DNA MER1_type 0 783 195 253 277 60 0 chr1 200297816 200297899 -81895765 - MER20B DNA MER1_type -695 88 1 263 297 97 69 chr1 200299667 200299812 -81893852 + MIR3 SINE MIR 32 180 -28 387 0 0 0 chr1 200300085 200300128 -81893536 + (TG)n Simple_repeat Simple_repeat 1 43 0 5424 107 25 37 chr1 200300203 200301152 -81892512 - L1PB3 LINE L1 -7 6147 5212 319 275 44 0 chr1 200301152 200301243 -81892421 - MER117 DNA MER1_type -73 124 30 237 119 0 0 chr1 200301284 200301326 -81892338 + (GA)n Simple_repeat Simple_repeat 1 42 0 230 246 0 16 chr1 200301319 200301380 -81892284 - AluSp/q SINE Alu -21 282 223 * 1645 160 4 14 chr1 200301330 200301605 -81892059 - AluJo SINE Alu -40 272 1 404 363 151 21 chr1 200302010 200302442 -81891222 - L2 LINE L2 -8 3305 2818 24 32 0 0 chr1 200302905 200302936 -81890728 + AT_rich Low_complexity Low_complexity 1 31 0 289 301 39 77 chr1 200303640 200303767 -81889897 - MIR SINE MIR -16 246 125 884 203 45 20 chr1 200303767 200303969 -81889695 + MER63A DNA MER1_type 4 210 0 289 301 39 77 chr1 200303969 200303997 -81889667 - MIR SINE MIR -137 125 97 239 337 11 0 chr1 200304120 200304209 -81889455 + GA-rich Low_complexity Low_complexity 3 92 0 1380 173 13 77 chr1 200305018 200305318 -81888346 + AluJb SINE Alu 1 281 -31 351 0 0 0 chr1 200305318 200305357 -81888307 + (CA)n Simple_repeat Simple_repeat 1 39 0 684 257 20 0 chr1 200305610 200305812 -81887852 - L1M4 LINE L1 -2751 3395 3190 6924 156 42 37 chr1 200305830 200306026 -81887638 - L1MC3 LINE L1 -2 7852 7658 1623 70 0 0 chr1 200306026 200306225 -81887439 - AluY SINE Alu -16 295 97 6924 156 42 37 chr1 200306225 200307462 -81886202 - L1MC3 LINE L1 -196 7658 6412 1802 136 42 72 chr1 200307462 200307793 -81885871 - MER1B DNA MER1_type 0 339 19 6580 209 50 40 chr1 200307796 200310164 -81883500 - L1MC3 LINE L1 -743 5472 4009 302 160 0 40 chr1 200310164 200310239 -81883425 - L1PA14 LINE L1 -3 6158 6087 6580 209 50 40 chr1 200310239 200311090 -81882574 - L1MC3 LINE L1 -2206 4009 3168 1672 278 81 71 chr1 200311094 200311472 -81882192 - L1MC3 LINE L1 -4701 1695 1322 1691 156 6 53 chr1 200311472 200311793 -81881871 - AluJo SINE Alu -6 306 1 1672 278 81 71 chr1 200311793 200312428 -81881236 - L1MC3 LINE L1 -5074 1322 695 508 252 113 20 chr1 200312428 200312579 -81881085 - FRAM SINE Alu -1 165 1 1672 278 81 71 chr1 200312579 200313204 -81880460 - L1MC3 LINE L1 -5701 695 40 455 156 67 167 chr1 200314628 200314808 -81878856 + MER20B DNA MER1_type 54 215 -4 842 229 110 0 chr1 200315953 200316198 -81877466 - MER5C DNA MER1_type -50 274 3 199 291 0 18 chr1 200316285 200316340 -81877324 + L2 LINE L2 3020 3073 -199 245 266 47 0 chr1 200316439 200316503 -81877161 + L2 LINE L2 3205 3271 -1 29 28 0 0 chr1 200317064 200317100 -81876564 + AT_rich Low_complexity Low_complexity 1 36 0 29 47 0 0 chr1 200318085 200318128 -81875536 + AT_rich Low_complexity Low_complexity 1 43 0 198 167 0 0 chr1 200318227 200318263 -81875401 + CT-rich Low_complexity Low_complexity 5 40 0 219 77 39 19 chr1 200319217 200319269 -81874395 + T-rich Low_complexity Low_complexity 2 54 0 233 325 24 0 chr1 200319781 200319864 -81873800 - MIR SINE MIR -68 140 56 275 241 304 0 chr1 200320203 200320315 -81873349 + MIR SINE MIR 117 262 0 25 0 0 0 chr1 200320840 200320865 -81872799 + AT_rich Low_complexity Low_complexity 1 25 0 783 296 57 29 chr1 200320957 200321088 -81872576 + L1ME3A LINE L1 5180 5306 -856 1132 214 56 39 chr1 200321088 200321425 -81872239 - MER2 DNA MER2_type -1 343 1 783 296 57 29 chr1 200321425 200321697 -81871967 + L1ME3A LINE L1 5306 5600 -562 2013 131 3 29 chr1 200321697 200321841 -81871823 + AluSx SINE Alu 1 147 -165 2168 104 7 0 chr1 200321841 200322129 -81871535 + AluSg SINE Alu 1 290 -20 2013 131 3 29 chr1 200322129 200322297 -81871367 + AluSx SINE Alu 147 305 -7 783 296 57 29 chr1 200322297 200322360 -81871304 + L1ME3A LINE L1 5600 5660 -502 6168 148 30 27 chr1 200322362 200322376 -81871288 - L1P LINE L1 -5048 1098 1086 5207 55 0 6 chr1 200322376 200323031 -81870633 - L1PA6 LINE L1 -11 6143 5493 6168 148 30 27 chr1 200323031 200324101 -81869563 - L1P LINE L1 -5060 1086 11 578 259 43 11 chr1 200324113 200324298 -81869366 + L1ME3A LINE L1 5654 5844 -326 3367 75 23 0 chr1 200324389 200324832 -81868832 + MLT2A2 LTR ERVL 1 453 0 14885 87 27 2 chr1 200324833 200326855 -81866809 + HERVL-A2 LTR ERVL 2 2074 -3580 * 15704 75 6 2 chr1 200326851 200329010 -81864654 + HERVL LTR ERVL 3438 5654 0 2042 131 0 0 chr1 200329687 200329970 -81863694 - AluSx SINE Alu -29 283 1 2362 71 0 3 chr1 200330086 200330380 -81863284 + AluY SINE Alu 1 293 -18 189 321 163 25 chr1 200330472 200330668 -81862996 + L2 LINE L2 1870 2092 -1222 386 296 130 41 chr1 200331035 200331204 -81862460 - MIR SINE MIR -62 200 17 360 216 73 106 chr1 200331259 200331504 -81862160 + L1ME4a LINE L1 5593 5829 -292 1593 142 113 25 chr1 200331504 200331779 -81861885 + AluJo SINE Alu 1 299 -13 1084 226 152 3 chr1 200331896 200332193 -81861471 - MER2 DNA MER2_type 0 344 4 3688 109 79 28 chr1 200332510 200333575 -81860089 + MER11A LTR ERVK 1 1236 0 519 279 136 29 chr1 200333616 200334028 -81859636 - HAL1 LINE L1 -409 2098 1643 342 198 101 93 chr1 200334110 200334368 -81859296 - HAL1 LINE L1 -1027 1480 1221 375 291 62 35 chr1 200334490 200334781 -81858883 - L1MEd LINE L1 -4864 1255 976 827 276 118 7 chr1 200335068 200335365 -81858299 + MER46C DNA MER2_type 8 337 -1 343 368 97 32 chr1 200335875 200336255 -81857409 + L2 LINE L2 2569 2973 -341 197 326 95 68 chr1 200336458 200336605 -81857059 + L2 LINE L2 3122 3272 0 208 212 61 30 chr1 200336658 200336724 -81856940 + MIR3 SINE MIR 134 201 -7 2221 98 0 26 chr1 200337102 200337409 -81856255 - AluSg SINE Alu -11 299 1 1275 212 85 100 chr1 200337609 200337654 -81856010 + L1ME3 LINE L1 5552 5596 -566 1709 169 0 33 chr1 200337654 200337955 -81855709 - AluJb SINE Alu -21 291 1 1275 212 85 100 chr1 200337955 200338499 -81855165 + L1ME3 LINE L1 5596 6132 -30 1206 189 46 74 chr1 200338567 200338702 -81854962 + AluJo SINE Alu 1 138 -174 198 103 0 0 chr1 200338702 200338731 -81854933 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1206 189 46 74 chr1 200338731 200338880 -81854784 + AluJo SINE Alu 138 277 -35 312 91 0 0 chr1 200338882 200338926 -81854738 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 2496 64 0 0 chr1 200339172 200339469 -81854195 - AluY SINE Alu -14 297 1 835 234 67 60 chr1 200339768 200340050 -81853614 + MLT1J2 LTR MaLR 1 284 -166 1047 149 0 0 chr1 200341266 200341414 -81852250 - AluSg/x SINE Alu -27 283 136 2410 93 3 0 chr1 200341574 200341886 -81851778 - AluSp SINE Alu 0 313 1 1151 179 30 0 chr1 200341886 200342121 -81851543 - L1MC1 LINE L1 -5 6328 6087 11069 128 164 30 chr1 200342125 200343016 -81850648 - Tigger1 DNA MER2_type 0 2418 1648 2289 86 3 3 chr1 200343016 200343308 -81850356 + AluSx SINE Alu 1 292 -20 11069 128 164 30 chr1 200343308 200343977 -81849687 - Tigger1 DNA MER2_type -770 1648 1070 1730 160 61 0 chr1 200343977 200344271 -81849393 + AluJb SINE Alu 1 312 0 11069 128 164 30 chr1 200344271 200344441 -81849223 - Tigger1 DNA MER2_type -1348 1070 924 2290 165 24 21 chr1 200344441 200344866 -81848798 + MSTB LTR MaLR 1 426 0 11069 128 164 30 chr1 200344866 200345265 -81848399 - Tigger1 DNA MER2_type -1494 924 1 3753 137 8 8 chr1 200345265 200345892 -81847772 - L1MC1 LINE L1 -410 5923 5297 3005 232 43 12 chr1 200345869 200347161 -81846503 - L1MCa LINE L1 -2989 3437 2101 * 23 0 0 0 chr1 200347366 200347389 -81846275 + AT_rich Low_complexity Low_complexity 1 23 0 788 291 141 64 chr1 200347737 200348672 -81844992 - L2 LINE L2 0 3272 2238 28 0 0 0 chr1 200348834 200348862 -81844802 + AT_rich Low_complexity Low_complexity 1 28 0 183 346 117 12 chr1 200349640 200349802 -81843862 + MIR3 SINE MIR 30 208 0 22 0 0 0 chr1 200349838 200349860 -81843804 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 200349899 200349942 -81843722 + AT_rich Low_complexity Low_complexity 1 43 0 212 119 0 24 chr1 200350369 200350411 -81843253 + (TA)n Simple_repeat Simple_repeat 2 42 0 288 265 44 0 chr1 200350712 200350780 -81842884 + MER5A DNA MER1_type 10 80 -109 2032 102 33 0 chr1 200351277 200351553 -81842111 + AluSx SINE Alu 1 312 0 223 37 0 0 chr1 200351553 200351580 -81842084 + (CAAA)n Simple_repeat Simple_repeat 2 176 0 301 239 136 0 chr1 200352160 200352197 -81841467 + L2 LINE L2 3200 3231 -82 180 0 0 0 chr1 200352197 200352217 -81841447 + (TTG)n Simple_repeat Simple_repeat 2 21 0 301 239 136 0 chr1 200352217 200352267 -81841397 + L2 LINE L2 3231 3299 -14 2001 112 20 10 chr1 200352912 200353207 -81840457 + AluSg1 SINE Alu 1 298 -11 2029 236 36 45 chr1 200353589 200354251 -81839413 - L1MC4 LINE L1 -1 8041 7386 426 229 25 0 chr1 200354287 200354409 -81839255 - L1MC4a LINE L1 -1330 6478 6354 3256 232 33 25 chr1 200354421 200355163 -81838501 - L1ME2 LINE L1 -13 6151 5392 4259 139 19 27 chr1 200355163 200355903 -81837761 - MER50 LTR ERV1 0 734 1 3256 232 33 25 chr1 200355903 200356336 -81837328 - L1ME2 LINE L1 -772 5392 4964 23 0 0 0 chr1 200359127 200359150 -81834514 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr1 200359452 200359481 -81834183 + AT_rich Low_complexity Low_complexity 1 29 0 309 118 0 0 chr1 200360206 200360257 -81833407 + (TG)n Simple_repeat Simple_repeat 1 51 0 2381 98 0 0 chr1 200361368 200361675 -81831989 - AluSx SINE Alu -5 307 1 508 275 104 25 chr1 200361678 200361871 -81831793 - MIR SINE MIR -48 214 5 273 271 62 73 chr1 200361867 200362044 -81831620 - L2 LINE L2 -963 2351 2177 * 2071 171 98 26 chr1 200362243 200362315 -81831349 - L1MB8 LINE L1 0 6178 6113 1691 117 50 0 chr1 200362315 200362613 -81831051 - L1MB3 LINE L1 -2 6181 5869 2071 171 98 26 chr1 200362613 200363042 -81830622 - L1MB8 LINE L1 -65 6113 5641 38 0 0 0 chr1 200364547 200364585 -81829079 + AT_rich Low_complexity Low_complexity 1 38 0 243 180 0 0 chr1 200365505 200365555 -81828109 + T-rich Low_complexity Low_complexity 5 54 0 24 0 0 0 chr1 200365686 200365710 -81827954 + AT_rich Low_complexity Low_complexity 1 24 0 934 210 179 33 chr1 200366635 200367026 -81826638 - L1MDb LINE L1 -4135 2271 1824 562 26 0 26 chr1 200367035 200367113 -81826551 + (TC)n Simple_repeat Simple_repeat 1 76 0 413 155 0 71 chr1 200367116 200367200 -81826464 - AluJ/FLAM SINE Alu -234 78 1 560 173 38 38 chr1 200367200 200367333 -81826331 - L1MDb LINE L1 -4897 1509 1377 767 165 8 0 chr1 200367334 200367461 -81826203 - AluJb SINE Alu -17 295 168 2472 241 60 49 chr1 200367464 200368499 -81825165 - L1MDb LINE L1 -5248 1161 3 2410 92 0 0 chr1 200368836 200369142 -81824522 - AluSg SINE Alu -4 306 1 29552 117 38 34 chr1 200369160 200375301 -81818363 - L1PA8 LINE L1 0 6172 12 219 330 42 17 chr1 200375439 200375557 -81818107 - MIR3 SINE MIR -32 176 56 * 234 167 77 103 chr1 200375496 200375574 -81818090 + MIR SINE MIR 164 239 -23 216 329 56 33 chr1 200375675 200375833 -81817831 + MIR SINE MIR 32 191 -60 203 220 0 20 chr1 200376281 200376331 -81817333 - L2 LINE L2 -1 3312 3264 24 32 0 0 chr1 200376790 200376821 -81816843 + AT_rich Low_complexity Low_complexity 1 31 0 607 358 66 52 chr1 200377346 200377558 -81816106 + L2 LINE L2 2418 2626 -646 1992 218 15 19 chr1 200377558 200378027 -81815637 - MLT1C LTR MaLR 0 467 1 607 358 66 52 chr1 200378027 200378089 -81815575 + L2 LINE L2 2626 2686 -586 3009 69 44 9 chr1 200378089 200378521 -81815143 - LTR7 LTR ERV1 -2 448 2 607 358 66 52 chr1 200378521 200378907 -81814757 + L2 LINE L2 2686 3079 -193 631 288 90 35 chr1 200379000 200379288 -81814376 + L1MB8 LINE L1 11 314 -6545 1665 241 68 83 chr1 200379316 200380707 -81812957 + L1MB8 LINE L1 1847 3208 -3749 * 3735 214 55 24 chr1 200380705 200381278 -81812386 + L1MB8 LINE L1 4544 5098 -1859 2159 104 3 7 chr1 200381278 200381576 -81812088 - AluSx SINE Alu -15 297 1 3735 214 55 24 chr1 200381576 200382026 -81811638 + L1MB8 LINE L1 5098 5602 -1355 276 30 0 0 chr1 200382026 200382059 -81811605 + (TG)n Simple_repeat Simple_repeat 2 34 0 3735 214 55 24 chr1 200382059 200382073 -81811591 + L1MB8 LINE L1 5602 5614 -1343 1881 142 16 26 chr1 200382158 200382468 -81811196 + AluJb SINE Alu 1 307 -5 4141 177 47 25 chr1 200382481 200382615 -81811049 + L1MB8 LINE L1 5869 5999 -990 2226 94 3 3 chr1 200382615 200382914 -81810750 + AluY SINE Alu 1 299 -12 4141 177 47 25 chr1 200382914 200383722 -81809942 + L1MB8 LINE L1 5999 6843 -146 2359 22 0 11 chr1 200383722 200384000 -81809664 - AluY SINE Alu -2 309 35 4141 177 47 25 chr1 200384000 200384146 -81809518 + L1MB8 LINE L1 6843 6984 -5 1293 196 56 14 chr1 200384181 200384466 -81809198 - AluJb SINE Alu -14 298 2 2451 68 3 7 chr1 200384674 200384984 -81808680 + AluSg1 SINE Alu 1 309 0 432 0 0 0 chr1 200384986 200385034 -81808630 + (TA)n Simple_repeat Simple_repeat 2 49 0 2003 95 32 11 chr1 200386262 200386547 -81807117 + AluSg1 SINE Alu 5 295 -14 22 0 0 0 chr1 200387412 200387434 -81806230 + AT_rich Low_complexity Low_complexity 1 22 0 1008 255 28 16 chr1 200387878 200388125 -81805539 - MIR SINE MIR 0 262 13 250 256 0 58 chr1 200388151 200388237 -81805427 - MIR SINE MIR 0 262 182 669 198 0 9 chr1 200388356 200388472 -81805192 - FLAM_A SINE Alu -18 115 1 442 244 34 68 chr1 200388762 200388938 -81804726 - HAL1 LINE L1 -11 2496 2327 1930 241 18 84 chr1 200389100 200389707 -81803957 - MER21B LTR ERV1 -294 569 3 994 135 0 0 chr1 200389869 200390017 -81803647 - AluSg/x SINE Alu -7 303 156 538 264 11 29 chr1 200390046 200390220 -81803444 - MIR SINE MIR 0 262 92 2987 230 76 9 chr1 200390234 200391042 -81802622 - L1ME3A LINE L1 -5 6165 5303 4396 107 16 6 chr1 200391103 200391741 -81801923 - LTR9B LTR ERV1 0 644 1 533 261 155 40 chr1 200391784 200392228 -81801436 - HAL1 LINE L1 -90 2417 1923 723 97 114 0 chr1 200392238 200392352 -81801312 - AluSg/x SINE Alu -13 299 173 274 100 25 0 chr1 200392352 200392392 -81801272 - AluY SINE Alu -214 87 47 523 265 128 20 chr1 200392420 200392624 -81801040 - HAL1 LINE L1 -590 1917 1692 1208 202 66 49 chr1 200392665 200392803 -81800861 + AluJo SINE Alu 1 135 -167 2400 84 0 0 chr1 200392803 200393100 -81800564 + AluSc SINE Alu 1 297 -12 1208 202 66 49 chr1 200393100 200393248 -81800416 + AluJo SINE Alu 135 292 -10 518 233 0 33 chr1 200393253 200393373 -81800291 - FLAM_A SINE Alu -17 116 1 3838 245 135 42 chr1 200393467 200393601 -81800063 - HAL1 LINE L1 -656 1851 1731 1496 196 43 46 chr1 200393601 200393973 -81799691 + MLT1A2 LTR MaLR 4 374 0 3838 245 135 42 chr1 200393973 200394002 -81799662 - HAL1 LINE L1 -776 1731 1706 4083 79 18 2 chr1 200394002 200394547 -81799117 + MER41A LTR ERV1 1 554 0 3838 245 135 42 chr1 200394547 200396069 -81797595 - HAL1 LINE L1 -801 1706 8 491 300 33 81 chr1 200396225 200396585 -81797079 + L2 LINE L2 2627 2969 -345 287 341 81 12 chr1 200396683 200396856 -81796808 + L2 LINE L2 3120 3304 -9 386 344 81 0 chr1 200396892 200397052 -81796612 + MIR3 SINE MIR 19 191 -17 2138 120 3 13 chr1 200397262 200397561 -81796103 + AluSx SINE Alu 1 296 -16 1879 160 0 13 chr1 200399199 200399506 -81794158 - AluJb SINE Alu -9 303 1 21 36 0 0 chr1 200399595 200399623 -81794041 + AT_rich Low_complexity Low_complexity 1 28 0 624 207 79 0 chr1 200399808 200399948 -81793716 - FAM SINE Alu -22 163 13 985 189 6 0 chr1 200401127 200401291 -81792373 - AluJ SINE Alu -11 301 137 954 161 7 0 chr1 200401436 200401585 -81792079 - AluJ SINE Alu -162 150 1 3799 107 18 16 chr1 200402053 200402614 -81791050 - MER61E LTR ERV1 -4 565 4 237 302 62 31 chr1 200403676 200403772 -81789892 + Charlie1 DNA MER1_type 1 99 -2662 * 4166 181 33 31 chr1 200403768 200404715 -81788949 + Charlie1 DNA MER1_type 1813 2761 0 1608 280 44 24 chr1 200408145 200408642 -81785022 - LTR33 LTR ERVL -14 507 1 274 284 0 14 chr1 200409074 200409148 -81784516 + CT-rich Low_complexity Low_complexity 2 74 0 2897 16 0 0 chr1 200409231 200409547 -81784117 - AluYb8 SINE Alu -2 316 1 29 28 0 0 chr1 200409673 200409709 -81783955 + AT_rich Low_complexity Low_complexity 1 36 0 3070 264 146 19 chr1 200410115 200410543 -81783121 + L2 LINE L2 109 482 -2832 2298 91 0 3 chr1 200410543 200410839 -81782825 - AluSq SINE Alu -18 295 1 3070 264 146 19 chr1 200410839 200411477 -81782187 + L2 LINE L2 482 1312 -2002 292 184 178 113 chr1 200411477 200411597 -81782067 - MER5C DNA MER1_type -1 323 185 3373 95 27 21 chr1 200411597 200412113 -81781551 + L1PB1 LINE L1 5628 6146 -5 292 184 178 113 chr1 200412113 200412177 -81781487 - MER5C DNA MER1_type -139 185 127 367 181 64 43 chr1 200412292 200412386 -81781278 - MER5C DNA MER1_type -226 98 3 1012 351 274 40 chr1 200412414 200412770 -81780894 + L2 LINE L2 1317 1589 -1725 2140 83 0 0 chr1 200412770 200413034 -81780630 - AluSx SINE Alu -4 308 45 1012 351 274 40 chr1 200413034 200413417 -81780247 + L2 LINE L2 1589 1881 -1433 817 145 0 0 chr1 200413417 200413534 -81780130 - FLAM_C SINE Alu -16 117 1 1012 351 274 40 chr1 200413534 200413714 -81779950 + L2 LINE L2 1881 2452 -862 * 1399 256 32 47 chr1 200413711 200414176 -81779488 + L2 LINE L2 2853 3310 -3 620 176 0 0 chr1 200414462 200414570 -81779094 + L1MB5 LINE L1 6057 6164 -10 2429 84 0 3 chr1 200414585 200414895 -81778769 - AluY SINE Alu -2 309 1 497 352 102 11 chr1 200415143 200415407 -81778257 - L2 LINE L2 -437 2877 2590 2237 114 0 3 chr1 200415674 200415980 -81777684 + AluSg SINE Alu 1 305 -5 196 320 15 105 chr1 200417418 200417618 -81776046 + L2 LINE L2 2805 2986 -286 231 370 31 68 chr1 200417807 200417999 -81775665 - L2 LINE L2 -223 3049 2865 330 397 34 19 chr1 200418265 200418474 -81775190 - L2 LINE L2 -553 2761 2550 183 162 0 0 chr1 200418518 200418555 -81775109 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 1492 86 24 0 chr1 200419187 200419396 -81774268 - L1PA8A LINE L1 -27 6104 5891 272 130 0 22 chr1 200419396 200419442 -81774222 + MER5B DNA MER1_type 128 172 -6 931 171 21 11 chr1 200419510 200419697 -81773967 - MER5A DNA MER1_type 0 189 1 210 143 0 0 chr1 200419951 200419986 -81773678 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 211 42 0 chr1 200419988 200420059 -81773605 + L1MCa LINE L1 1995 2068 -4358 234 208 0 0 chr1 200420063 200420116 -81773548 + (TA)n Simple_repeat Simple_repeat 2 54 0 1627 169 13 29 chr1 200420277 200420584 -81773080 - AluJo SINE Alu -10 302 1 2087 125 7 10 chr1 200420588 200420893 -81772771 - AluSq SINE Alu -9 304 1 2348 81 0 17 chr1 200421251 200421549 -81772115 + AluSq SINE Alu 12 304 -9 223 229 0 0 chr1 200422579 200422627 -81771037 + MIR SINE MIR 125 172 -90 2336 94 3 0 chr1 200423416 200423715 -81769949 - AluSc SINE Alu -9 300 1 2121 126 3 0 chr1 200425358 200425652 -81768012 - AluSx SINE Alu -17 295 1 1026 316 71 86 chr1 200426242 200426720 -81766944 + L1M4 LINE L1 4299 4783 -1363 1931 105 86 0 chr1 200426720 200426987 -81766677 + AluSg SINE Alu 4 293 -17 1026 316 71 86 chr1 200426987 200427318 -81766346 + L1M4 LINE L1 4783 5093 -1053 1561 128 13 0 chr1 200427318 200427545 -81766119 + MER30 DNA MER1_type 1 230 0 1026 316 71 86 chr1 200427545 200427725 -81765939 + L1M4 LINE L1 5093 5274 -872 988 207 13 35 chr1 200427790 200428017 -81765647 + L1ME3A LINE L1 5887 6108 -62 493 330 14 45 chr1 200428141 200428199 -81765465 - L2 LINE L2 -1334 1980 1922 1859 176 7 3 chr1 200428199 200428501 -81765163 + AluJb SINE Alu 1 303 -9 493 330 14 45 chr1 200428501 200428663 -81765001 - L2 LINE L2 -1392 1922 1767 4685 154 14 2 chr1 200428663 200429464 -81764200 + L1 LINE L1 4044 4853 -1293 1327 270 116 22 chr1 200429464 200429956 -81763708 - L2 LINE L2 -799 2515 1978 5971 19 0 0 chr1 200430062 200430756 -81762908 - L1PA2 LINE L1 -208 5947 5254 1745 37 18 0 chr1 200430768 200430985 -81762679 + L1PA2 LINE L1 5935 6155 0 40 37 0 0 chr1 200431197 200431251 -81762413 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr1 200431997 200432027 -81761637 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 200432422 200432443 -81761221 + AT_rich Low_complexity Low_complexity 1 21 0 1138 186 0 40 chr1 200432497 200432723 -81760941 - AluJb SINE Alu -11 301 85 334 323 127 0 chr1 200434695 200434853 -81758811 + MER91B DNA MER1_type 1 178 -12 461 259 196 23 chr1 200435071 200435196 -81758468 + HAL1 LINE L1 16 118 -2389 396 40 0 0 chr1 200435196 200435246 -81758418 + (CA)n Simple_repeat Simple_repeat 1 50 0 461 259 196 23 chr1 200435246 200436804 -81756860 + HAL1 LINE L1 118 2066 -441 909 240 20 10 chr1 200436854 200437058 -81756606 - MIR SINE MIR -52 210 5 1001 237 64 32 chr1 200437099 200437445 -81756219 + HAL1 LINE L1 2127 2483 -24 1230 129 0 0 chr1 200437447 200437617 -81756047 - FRAM SINE Alu -11 165 1 185 0 40 0 chr1 200438737 200438762 -81754902 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42036 39 21 1 chr1 200438762 200444777 -81748887 - L1PA2 LINE L1 -16 6139 2 2198 104 0 10 chr1 200445037 200445344 -81748320 - AluSx SINE Alu -8 304 1 22 0 0 0 chr1 200445346 200445368 -81748296 + AT_rich Low_complexity Low_complexity 1 22 0 1056 136 5 45 chr1 200445452 200445650 -81748014 - AluJ SINE Alu 0 312 123 1474 92 5 0 chr1 200445665 200445850 -81747814 + AluSx SINE Alu 1 186 -126 476 95 0 0 chr1 200445984 200446058 -81747606 + AluSp/q SINE Alu 225 298 -15 824 152 0 0 chr1 200446062 200446187 -81747477 - AluJ SINE Alu -187 125 1 183 361 71 50 chr1 200446676 200447014 -81746650 + L2 LINE L2 2596 2940 -374 276 314 88 36 chr1 200447239 200447376 -81746288 + L2 LINE L2 3127 3270 -2 22 88 0 0 chr1 200447733 200447790 -81745874 + AT_rich Low_complexity Low_complexity 1 57 0 858 204 57 0 chr1 200448328 200448485 -81745179 + FRAM SINE Alu 1 166 0 1464 157 33 93 chr1 200449873 200450173 -81743491 + AluJo SINE Alu 1 282 -30 183 100 0 0 chr1 200450176 200450206 -81743458 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2445 81 3 0 chr1 200450590 200450898 -81742766 - AluSp SINE Alu -4 309 1 1804 186 0 19 chr1 200451388 200451706 -81741958 - AluJb SINE Alu 0 312 1 1178 217 84 62 chr1 200451791 200452196 -81741468 + MLT1C LTR MaLR 54 467 0 1501 106 55 0 chr1 200452320 200452555 -81741109 - L1MA3 LINE L1 0 6305 6058 427 272 247 6 chr1 200452695 200452853 -81740811 - MIR SINE MIR -39 223 28 724 245 40 84 chr1 200453059 200453381 -81740283 - L2 LINE L2 -1 3312 3005 622 247 62 70 chr1 200453435 200453694 -81739970 + HAL1 LINE L1 1323 1579 -928 234 262 0 48 chr1 200453699 200453783 -81739881 + HAL1 LINE L1 1556 1635 -872 761 155 92 14 chr1 200453788 200453930 -81739734 + FRAM SINE Alu 22 174 -2 465 255 0 0 chr1 200453934 200454032 -81739632 + HAL1 LINE L1 1797 1894 -613 620 209 199 55 chr1 200454978 200455179 -81738485 - MIR SINE MIR -32 230 1 837 200 55 6 chr1 200455228 200455393 -81738271 - AluJb SINE Alu -6 306 134 2313 96 0 7 chr1 200455637 200455940 -81737724 - AluSg SINE Alu -9 301 1 2012 82 4 19 chr1 200456272 200456542 -81737122 + AluSq SINE Alu 1 266 -47 2334 52 41 10 chr1 200456664 200456955 -81736709 - AluY SINE Alu -11 300 1 2502 35 3 0 chr1 200457091 200457380 -81736284 - AluY SINE Alu -21 290 1 911 83 53 0 chr1 200457507 200457639 -81736025 - MER85 DNA T2_type 0 139 1 2297 94 0 13 chr1 200458388 200458696 -81734968 - AluSq SINE Alu -9 304 1 1617 124 4 23 chr1 200458768 200459025 -81734639 + AluSc SINE Alu 41 292 -17 26 50 0 0 chr1 200459027 200459067 -81734597 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 200459414 200459442 -81734222 + AT_rich Low_complexity Low_complexity 1 28 0 327 178 156 11 chr1 200459919 200460009 -81733655 - L1ME4a LINE L1 -12 6109 6007 621 244 75 6 chr1 200460023 200460183 -81733481 + MIR SINE MIR 3 173 -89 252 236 0 0 chr1 200460636 200460725 -81732939 + (TA)n Simple_repeat Simple_repeat 1 89 0 2416 81 0 0 chr1 200461791 200462086 -81731578 - AluSq SINE Alu -18 295 1 2226 112 0 7 chr1 200462168 200462484 -81731180 - AluSx SINE Alu 0 312 1 487 244 41 24 chr1 200462747 200462870 -81730794 - L2 LINE L2 0 3313 3189 305 277 75 0 chr1 200462984 200463078 -81730586 + L2 LINE L2 3172 3272 0 315 177 0 16 chr1 200463853 200463915 -81729749 - MER116 DNA Mariner 0 80 20 317 246 0 0 chr1 200463956 200464017 -81729647 + MIR3 SINE MIR 148 208 0 202 151 75 0 chr1 200464209 200464262 -81729402 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 28 29 0 0 chr1 200464935 200464970 -81728694 + AT_rich Low_complexity Low_complexity 1 35 0 483 276 106 29 chr1 200466246 200466416 -81727248 - MIR3 SINE MIR -3 205 23 21 36 0 0 chr1 200466817 200466845 -81726819 + AT_rich Low_complexity Low_complexity 1 28 0 430 228 0 0 chr1 200467913 200468027 -81725637 - L1MA4 LINE L1 -6 6294 6181 25 31 0 0 chr1 200468208 200468240 -81725424 + AT_rich Low_complexity Low_complexity 1 32 0 1659 177 50 10 chr1 200470188 200470487 -81723177 + AluJo SINE Alu 1 311 -1 24 0 0 0 chr1 200471479 200471503 -81722161 + AT_rich Low_complexity Low_complexity 1 24 0 2964 241 42 31 chr1 200471553 200472337 -81721327 + L1ME3A LINE L1 5330 6125 -45 1788 171 0 35 chr1 200472337 200472653 -81721011 - AluJo SINE Alu -7 305 1 2964 241 42 31 chr1 200472653 200472698 -81720966 + L1ME3A LINE L1 6125 6168 -2 2481 65 7 0 chr1 200472844 200473153 -81720511 - AluY SINE Alu 0 311 1 2090 100 3 20 chr1 200473193 200473494 -81720170 + AluSc SINE Alu 1 296 -13 27 49 0 0 chr1 200473692 200473733 -81719931 + AT_rich Low_complexity Low_complexity 1 41 0 1270 232 33 104 chr1 200474189 200474281 -81719383 - MLT1E3 LTR MaLR -2 622 525 1718 162 35 7 chr1 200474281 200474444 -81719220 - AluJb SINE Alu -20 292 116 216 0 0 0 chr1 200474444 200474468 -81719196 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1718 162 35 7 chr1 200474468 200474588 -81719076 - AluJb SINE Alu -196 116 1 1270 232 33 104 chr1 200474588 200474888 -81718776 - MLT1E3 LTR MaLR -99 525 258 2376 142 56 7 chr1 200474896 200475304 -81718360 - MSTA LTR MaLR 0 428 1 9393 173 19 15 chr1 200475304 200475526 -81718138 - MSTA-int LTR MaLR 0 1651 1432 2254 75 7 0 chr1 200475526 200475804 -81717860 + AluY SINE Alu 23 302 -9 9393 173 19 15 chr1 200475804 200475909 -81717755 - MSTA-int LTR MaLR -219 1432 1329 3806 98 0 0 chr1 200475909 200476421 -81717243 - MER75 DNA T2_type 0 514 3 9393 173 19 15 chr1 200476421 200477734 -81715930 - MSTA-int LTR MaLR -322 1329 2 425 133 56 33 chr1 200477789 200477879 -81715785 - MLT1E3 LTR MaLR -503 151 60 929 161 6 19 chr1 200477880 200478041 -81715623 + AluJb SINE Alu 140 298 -14 1203 267 110 40 chr1 200478095 200478977 -81714687 + L1ME3A LINE L1 3645 4605 -1541 1270 144 10 5 chr1 200478983 200479177 -81714487 + AluJo SINE Alu 87 281 -31 1237 271 128 24 chr1 200479226 200479943 -81713721 + L1ME3A LINE L1 4672 5556 -614 2280 80 3 13 chr1 200479943 200480244 -81713420 + AluSg1 SINE Alu 1 298 -11 1237 271 128 24 chr1 200480244 200480682 -81712982 + L1ME3A LINE L1 5556 5947 -223 368 262 146 34 chr1 200480972 200481205 -81712459 - L1ME LINE L1 -299 5822 5564 366 259 107 90 chr1 200481369 200481779 -81711885 - L1ME LINE L1 -1197 4949 4533 2101 137 0 6 chr1 200482008 200482321 -81711343 + AluSx SINE Alu 1 311 -1 596 254 129 73 chr1 200482378 200483141 -81710523 + L1ME3A LINE L1 5149 5937 -233 249 250 0 0 chr1 200483322 200483398 -81710266 - L1ME LINE L1 -2212 3934 3859 22 0 0 0 chr1 200483631 200483653 -81710011 + AT_rich Low_complexity Low_complexity 1 22 0 375 207 35 11 chr1 200483950 200484037 -81709627 + MER69 DNA AcHobo 2438 2526 0 1187 151 58 5 chr1 200484692 200484897 -81708767 - MLT1C LTR MaLR -1 466 251 2058 144 26 35 chr1 200485555 200485688 -81707976 - MER2 DNA MER2_type 0 345 212 3098 114 89 20 chr1 200485688 200486180 -81707484 - MER1A DNA MER1_type -1 526 1 2058 144 26 35 chr1 200486180 200486394 -81707270 - MER2 DNA MER2_type -133 212 1 480 167 73 0 chr1 200486394 200486490 -81707174 - L1MA9 LINE L1 -40 6272 6170 300 111 0 0 chr1 200486492 200486537 -81707127 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 4207 150 53 48 chr1 200486553 200487544 -81706120 - L1MA9 LINE L1 -159 6153 5164 235 213 85 0 chr1 200487714 200487761 -81705903 - L2 LINE L2 -1 3312 3262 2572 53 0 0 chr1 200487869 200488172 -81705492 + AluY SINE Alu 1 303 -8 538 289 62 43 chr1 200488355 200488611 -81705053 + MIR SINE MIR 2 262 0 504 0 0 0 chr1 200489484 200489540 -81704124 + (TTATG)n Simple_repeat Simple_repeat 2 57 0 1987 113 7 4 chr1 200489543 200489817 -81703847 - AluSx SINE Alu -32 280 6 834 217 16 29 chr1 200490115 200490359 -81703305 + L1MC4 LINE L1 7759 7999 -43 2177 145 169 4 chr1 200490692 200491144 -81702520 + L1MB7 LINE L1 5655 6184 0 1075 288 178 2 chr1 200491178 200491653 -81702011 + L2 LINE L2 2751 3313 0 1073 163 16 26 chr1 200491998 200492188 -81701476 + MER58A DNA MER1_type 37 224 0 463 256 77 26 chr1 200492271 200492427 -81701237 + MIR SINE MIR 76 239 -23 1743 168 55 0 chr1 200492675 200492966 -81700698 - AluJo SINE Alu 0 312 6 263 164 16 16 chr1 200493208 200493269 -81700395 - Alu SINE Alu -1 301 241 2028 87 8 8 chr1 200493303 200493569 -81700095 - AluSx SINE Alu -44 268 3 267 256 51 13 chr1 200493982 200494060 -81699604 - L2 LINE L2 -193 3079 2999 267 219 137 14 chr1 200494113 200494186 -81699478 - L2 LINE L2 -6 3307 3226 446 294 21 7 chr1 200494747 200494890 -81698774 - L2 LINE L2 -9 3304 3160 441 36 0 0 chr1 200495371 200495426 -81698238 + (CA)n Simple_repeat Simple_repeat 1 55 0 369 277 86 45 chr1 200499322 200499542 -81694122 - L2 LINE L2 -480 2834 2606 378 336 155 30 chr1 200499723 200500399 -81693265 - L2 LINE L2 -773 2541 1781 217 244 0 0 chr1 200500823 200500868 -81692796 + L2 LINE L2 3269 3313 0 704 294 94 55 chr1 200501328 200501787 -81691877 + L1MEd LINE L1 97 573 -5632 26 50 0 0 chr1 200501970 200502010 -81691654 + AT_rich Low_complexity Low_complexity 1 40 0 358 221 158 31 chr1 200502063 200502190 -81691474 + L1MEd LINE L1 2168 2310 -4086 1084 279 176 18 chr1 200502259 200503188 -81690476 + L1MEd LINE L1 2384 3458 -2757 718 204 56 0 chr1 200503283 200503425 -81690239 + FRAM SINE Alu 1 150 -16 226 135 58 0 chr1 200503440 200503492 -81690172 + GA-rich Low_complexity Low_complexity 5 59 0 1216 119 97 37 chr1 200503968 200504237 -81689427 - AluJb SINE Alu -27 285 1 314 210 12 25 chr1 200504510 200504591 -81689073 + MER116 DNA Mariner 1 80 0 277 344 32 19 chr1 200505266 200505420 -81688244 - L2 LINE L2 -606 2708 2553 332 217 212 49 chr1 200506556 200506740 -81686924 + MIR SINE MIR 1 214 -48 395 100 57 14 chr1 200506761 200506831 -81686833 + MADE1 DNA Mariner 3 75 -5 33 0 0 0 chr1 200507138 200507171 -81686493 + AT_rich Low_complexity Low_complexity 1 33 0 194 308 13 26 chr1 200508472 200508550 -81685114 + MIR SINE MIR 142 218 -44 962 167 25 0 chr1 200508569 200508731 -81684933 + AluJb SINE Alu 130 295 -17 23 33 0 0 chr1 200508845 200508875 -81684789 + AT_rich Low_complexity Low_complexity 1 30 0 1539 158 106 0 chr1 200509237 200509502 -81684162 + AluJb SINE Alu 13 305 -7 405 274 173 4 chr1 200509744 200509974 -81683690 + L2 LINE L2 2781 3039 -274 186 362 29 38 chr1 200510411 200510516 -81683148 - MIR SINE MIR -63 145 42 3364 40 0 0 chr1 200511431 200511836 -81681828 - L1PA4 LINE L1 -3 6152 5748 192 152 0 0 chr1 200513401 200513434 -81680230 + (TA)n Simple_repeat Simple_repeat 1 33 0 2116 123 3 0 chr1 200514441 200514733 -81678931 - AluSx SINE Alu -19 293 1 398 216 2 14 chr1 200515170 200515254 -81678410 + AluJ/FLAM SINE Alu 1 71 -231 3794 93 9 15 chr1 200517160 200517689 -81675975 - MER1A DNA MER1_type -1 526 1 361 309 151 29 chr1 200517757 200517896 -81675768 + L2 LINE L2 3116 3271 -1 507 277 34 40 chr1 200519166 200519343 -81674321 - MER5B DNA MER1_type -1 177 2 243 175 0 0 chr1 200519826 200519883 -81673781 + (TA)n Simple_repeat Simple_repeat 1 57 0 23 0 0 0 chr1 200520604 200520627 -81673037 + AT_rich Low_complexity Low_complexity 1 23 0 4543 141 60 21 chr1 200520889 200521656 -81672008 + L1MB7 LINE L1 5317 6120 -64 1524 197 13 32 chr1 200521656 200521971 -81671693 - AluJo SINE Alu -2 310 2 4543 141 60 21 chr1 200521971 200522039 -81671625 + L1MB7 LINE L1 6120 6184 0 30 93 0 0 chr1 200522067 200522153 -81671511 + AT_rich Low_complexity Low_complexity 1 86 0 264 314 100 69 chr1 200522693 200522972 -81670692 + L2 LINE L2 2315 2613 -701 2053 265 130 61 chr1 200522972 200523863 -81669801 + MER45C DNA AcHobo 1 953 0 264 314 100 69 chr1 200523863 200524003 -81669661 + L2 LINE L2 2613 2747 -567 318 282 13 13 chr1 200524582 200524660 -81669004 + Charlie7 DNA MER1_type 3 80 -2532 189 0 0 0 chr1 200524804 200524825 -81668839 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 2026 128 14 0 chr1 200524825 200525107 -81668557 - AluSx SINE Alu -26 286 1 882 184 12 6 chr1 200525550 200525713 -81667951 + FAM SINE Alu 1 164 -11 2082 96 46 4 chr1 200526190 200526471 -81667193 + AluSx SINE Alu 1 293 -19 187 267 0 22 chr1 200527393 200527438 -81666226 - L2 LINE L2 -7 3306 3263 301 264 63 81 chr1 200527649 200527983 -81665681 + L1P LINE L1 4906 5233 -913 2252 97 0 3 chr1 200528001 200528301 -81665363 + AluSg SINE Alu 1 299 -11 1541 182 57 55 chr1 200528486 200528533 -81665131 + L1MC/D LINE L1 5375 5420 -2388 2244 108 0 0 chr1 200528533 200528838 -81664826 - AluSc SINE Alu -4 305 1 1872 158 20 0 chr1 200528844 200529141 -81664523 - AluJb SINE Alu -9 303 1 1541 182 57 55 chr1 200529141 200529488 -81664176 + L1MC/D LINE L1 5424 5777 -2031 2008 186 104 28 chr1 200529489 200529958 -81663706 + MLT1D LTR MaLR 1 505 0 834 157 73 0 chr1 200529958 200530136 -81663528 + L1MD3 LINE L1 7783 7973 -22 2050 194 98 11 chr1 200530278 200530737 -81662927 + L1ME1 LINE L1 5659 6157 -9 245 213 50 0 chr1 200530940 200531020 -81662644 + (TATAA)n Simple_repeat Simple_repeat 3 86 0 259 267 0 70 chr1 200531132 200531218 -81662446 - MER5A DNA MER1_type -28 161 82 205 261 85 69 chr1 200531153 200531283 -81662381 + MER5A DNA MER1_type 55 186 -3 * 24 53 0 0 chr1 200532556 200532594 -81661070 + AT_rich Low_complexity Low_complexity 1 38 0 192 163 0 0 chr1 200532762 200532805 -81660859 + T-rich Low_complexity Low_complexity 1 43 0 419 287 0 9 chr1 200532963 200533071 -81660593 + MIR SINE MIR 5 111 -151 905 166 195 0 chr1 200533071 200533276 -81660388 - MSTA LTR MaLR 0 428 184 399 167 42 52 chr1 200533277 200533373 -81660291 + THE1C LTR MaLR 67 161 -214 182 321 50 83 chr1 200533432 200533650 -81660014 - L2 LINE L2 -85 3187 2977 3617 136 16 3 chr1 200534479 200535313 -81658351 + L1PB1 LINE L1 4938 5782 -369 2525 92 6 11 chr1 200535429 200535789 -81657875 + L1PB1 LINE L1 5792 6149 -2 465 363 78 32 chr1 200536309 200536742 -81656922 - L2 LINE L2 -2524 790 338 1250 191 21 4 chr1 200536959 200537194 -81656470 + L1MCa LINE L1 259 497 -5929 456 63 63 0 chr1 200537197 200537276 -81656388 + CT-rich Low_complexity Low_complexity 1 84 0 321 109 0 0 chr1 200537307 200537353 -81656311 - Alu SINE Alu -24 276 231 1132 85 0 0 chr1 200537353 200537494 -81656170 - AluSq/x SINE Alu -172 141 1 3570 136 53 80 chr1 200537494 200538242 -81655422 + L1MCa LINE L1 483 1210 -5216 432 161 49 0 chr1 200538237 200538318 -81655346 + L1MC1 LINE L1 5839 5923 -421 * 497 184 18 37 chr1 200538318 200538427 -81655237 - Tigger5 DNA MER2_type 0 2323 2217 2066 166 17 25 chr1 200538467 200538871 -81654793 + L1MC1 LINE L1 5924 6324 -9 5613 178 85 25 chr1 200538880 200541525 -81652139 - L1MCa LINE L1 -2535 3891 1090 187 299 97 45 chr1 200541539 200541673 -81651991 + L2 LINE L2 3173 3313 0 2277 90 10 0 chr1 200541714 200542015 -81651649 + AluSp SINE Alu 1 304 -9 1960 142 16 9 chr1 200542337 200542654 -81651010 - Tigger2 DNA MER2_type 0 2718 2400 970 251 148 46 chr1 200542922 200543293 -81650371 + MLT1I LTR MaLR 1 409 0 1571 202 30 3 chr1 200543498 200543678 -81649986 - AluJo SINE Alu -2 310 117 216 0 0 0 chr1 200543678 200543702 -81649962 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1571 202 30 3 chr1 200543702 200543823 -81649841 - AluJo SINE Alu -195 117 1 249 276 66 0 chr1 200543920 200543996 -81649668 - L2 LINE L2 0 3313 3233 294 234 0 0 chr1 200544279 200544343 -81649321 + L2 LINE L2 2897 2960 -312 22 35 0 0 chr1 200544489 200544518 -81649146 + AT_rich Low_complexity Low_complexity 1 29 0 1137 230 0 9 chr1 200545202 200545419 -81648245 - MIR SINE MIR -40 222 8 968 192 134 5 chr1 200545664 200545888 -81647776 - MIR SINE MIR -7 255 3 316 252 153 54 chr1 200547144 200547646 -81646018 - L1ME2 LINE L1 -65 6056 5502 1006 276 9 4 chr1 200547691 200547916 -81645748 - MIR SINE MIR -21 241 16 280 242 126 27 chr1 200547929 200548217 -81645447 - L1M2 LINE L1 -786 5360 5152 1114 155 0 0 chr1 200548467 200548641 -81645023 - AluSg/x SINE Alu -2 310 137 1849 178 3 0 chr1 200548697 200548995 -81644669 - AluJb SINE Alu -13 299 1 231 327 82 45 chr1 200549167 200549277 -81644387 - L2 LINE L2 -17 3255 3142 472 317 175 28 chr1 200549748 200550183 -81643481 - MLT1J LTR MaLR -8 503 5 1146 159 32 56 chr1 200550358 200550609 -81643055 + L1MB8 LINE L1 5622 5866 -312 625 147 10 0 chr1 200550609 200550711 -81642953 + AluJb SINE Alu 182 284 -28 348 120 0 80 chr1 200550732 200550807 -81642857 + L1MB8 LINE L1 5884 5952 -226 * 760 266 17 21 chr1 200550783 200551016 -81642648 + HAL1 LINE L1 1367 1598 -909 255 368 82 34 chr1 200551035 200551304 -81642360 - L2 LINE L2 -523 2791 2510 3431 199 39 40 chr1 200551821 200552640 -81641024 - L1MD2 LINE L1 -13 6346 5529 417 209 5 3 chr1 200552653 200552778 -81640886 - L1M4 LINE L1 -1073 5073 4948 24 67 0 0 chr1 200552797 200552842 -81640822 + AT_rich Low_complexity Low_complexity 1 45 0 880 178 0 33 chr1 200552842 200552994 -81640670 - FRAM SINE Alu -30 146 1 234 267 17 0 chr1 200554311 200554371 -81639293 + L2 LINE L2 3242 3302 -11 362 269 34 101 chr1 200554858 200555066 -81638598 - MIR SINE MIR -61 201 8 342 0 0 0 chr1 200555142 200555180 -81638484 + (CA)n Simple_repeat Simple_repeat 2 39 0 858 298 81 30 chr1 200555495 200556028 -81637636 + L1MC4a LINE L1 5314 5873 -1935 182 200 37 15 chr1 200556062 200556197 -81637467 + (TA)n Simple_repeat Simple_repeat 2 139 0 348 300 208 74 chr1 200556380 200557776 -81635888 + L2 LINE L2 1693 3272 0 2156 114 0 13 chr1 200557866 200558164 -81635500 + AluSq SINE Alu 2 295 -18 195 42 0 0 chr1 200558329 200558353 -81635311 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 803 164 0 0 chr1 200560980 200561102 -81632562 - AluSq/x SINE Alu -180 132 11 35 41 0 0 chr1 200562106 200562155 -81631509 + AT_rich Low_complexity Low_complexity 1 49 0 378 0 0 0 chr1 200562337 200562379 -81631285 + (TG)n Simple_repeat Simple_repeat 1 42 0 459 0 0 0 chr1 200563116 200563167 -81630497 + (TG)n Simple_repeat Simple_repeat 2 52 0 396 0 0 0 chr1 200564201 200564245 -81629419 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 208 313 88 12 chr1 200564270 200564350 -81629314 + L2 LINE L2 3186 3271 -1 696 150 225 0 chr1 200564610 200564770 -81628894 - MER33 DNA MER1_type -127 197 2 2312 140 51 51 chr1 200566016 200566444 -81627220 - MSTA LTR MaLR 0 428 1 207 303 37 43 chr1 200566476 200566591 -81627073 - MIR SINE MIR -88 120 39 458 238 18 83 chr1 200568440 200568608 -81625056 - L1ME1 LINE L1 0 6164 6008 240 86 0 0 chr1 200568910 200568945 -81624719 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 373 308 38 110 chr1 200569035 200569380 -81624284 - L2 LINE L2 -18 3295 2935 278 385 0 8 chr1 200569470 200569587 -81624077 - L2 LINE L2 -475 2839 2724 21 0 0 0 chr1 200570611 200570632 -81623032 + AT_rich Low_complexity Low_complexity 1 21 0 860 208 95 12 chr1 200570634 200570875 -81622789 - MER33 DNA MER1_type -38 286 26 1057 178 0 0 chr1 200571411 200571580 -81622084 + FRAM SINE Alu 2 170 -6 206 351 158 30 chr1 200571605 200571626 -81622038 - L2 LINE L2 -678 2636 2619 2206 110 10 7 chr1 200571626 200571936 -81621728 + AluSq SINE Alu 1 311 -2 206 351 158 30 chr1 200571936 200572623 -81621041 - L2 LINE L2 -695 2619 1837 574 332 36 11 chr1 200574432 200574666 -81618998 - MIR SINE MIR -16 246 6 216 316 59 29 chr1 200574974 200575110 -81618554 - L2 LINE L2 -13 3300 3161 524 197 59 20 chr1 200576986 200577138 -81616526 + L1ME4a LINE L1 5693 5850 -271 898 244 106 36 chr1 200577307 200577779 -81615885 + L1MC4 LINE L1 7537 8041 -1 271 312 45 19 chr1 200577784 200577938 -81615726 + L1ME4a LINE L1 5964 6121 0 22 35 0 0 chr1 200578105 200578134 -81615530 + AT_rich Low_complexity Low_complexity 1 29 0 190 367 41 48 chr1 200578191 200578338 -81615326 - L2 LINE L2 -231 3041 2896 21 36 0 0 chr1 200579072 200579100 -81614564 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 200584603 200584627 -81609037 + AT_rich Low_complexity Low_complexity 1 24 0 2340 107 0 0 chr1 200585040 200585348 -81608316 - AluSx SINE Alu -4 308 1 183 229 0 0 chr1 200586922 200586957 -81606707 - L2 LINE L2 -24 3289 3255 372 92 200 0 chr1 200587931 200587996 -81605668 - MADE1 DNA Mariner -1 79 2 297 0 0 0 chr1 200588802 200588835 -81604829 + (TG)n Simple_repeat Simple_repeat 1 33 0 225 0 0 0 chr1 200589066 200589091 -81604573 + (T)n Simple_repeat Simple_repeat 1 25 0 279 173 0 0 chr1 200590037 200590089 -81603575 + A-rich Low_complexity Low_complexity 1 52 0 636 243 126 14 chr1 200590781 200591003 -81602661 - MIR SINE MIR -7 255 9 433 354 96 19 chr1 200591004 200591422 -81602242 - L2 LINE L2 -1333 1981 1532 1873 162 3 0 chr1 200593250 200593540 -81600124 + AluJb SINE Alu 1 291 -21 22 56 0 0 chr1 200595339 200595375 -81598289 + AT_rich Low_complexity Low_complexity 1 36 0 34 0 0 0 chr1 200595623 200595657 -81598007 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr1 200596403 200596431 -81597233 + AT_rich Low_complexity Low_complexity 1 28 0 209 163 20 0 chr1 200598914 200598963 -81594701 + (TA)n Simple_repeat Simple_repeat 1 50 0 185 200 75 0 chr1 200600666 200600706 -81592958 - MIR SINE MIR -4 258 216 184 220 0 102 chr1 200600677 200600736 -81592928 - L2 LINE L2 -24 3289 3237 * 21 0 0 0 chr1 200602800 200602821 -81590843 + AT_rich Low_complexity Low_complexity 1 21 0 302 201 23 196 chr1 200604089 200604303 -81589361 + MER5B DNA MER1_type 1 177 -1 2405 67 0 7 chr1 200604744 200605041 -81588623 + AluY SINE Alu 10 304 -7 798 125 7 7 chr1 200605378 200605522 -81588142 - MER63 DNA MER1_type -868 193 50 296 240 27 13 chr1 200605636 200605711 -81587953 + MIR3 SINE MIR 124 199 -9 936 178 0 7 chr1 200605908 200606065 -81587599 + FRAM SINE Alu 1 151 -25 875 227 63 29 chr1 200606062 200606300 -81587364 - MIR SINE MIR -2 260 15 * 219 103 0 0 chr1 200606300 200606339 -81587325 + (A)n Simple_repeat Simple_repeat 1 39 0 586 291 83 79 chr1 200608237 200608641 -81585023 - L1MC4a LINE L1 -1967 5841 5433 1751 166 23 7 chr1 200608641 200608948 -81584716 + AluJo SINE Alu 1 312 0 586 291 83 79 chr1 200608948 200609024 -81584640 - L1MC4a LINE L1 -2375 5433 5359 306 346 122 5 chr1 200609246 200609460 -81584204 - L1ME4a LINE L1 -41 6080 5842 320 309 48 43 chr1 200609557 200609745 -81583919 + L2 LINE L2 2810 2998 -274 327 237 75 24 chr1 200610198 200610360 -81583304 - MIR SINE MIR -2 260 10 984 169 43 82 chr1 200613099 200613315 -81580349 + L1MB7 LINE L1 5927 6133 -51 2014 127 13 7 chr1 200613315 200613596 -81580068 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr1 200613596 200613616 -81580048 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2014 127 13 7 chr1 200613616 200613634 -81580030 + AluSx SINE Alu 286 302 -10 984 169 43 82 chr1 200613634 200613672 -81579992 + L1MB7 LINE L1 6133 6171 -13 201 300 17 0 chr1 200613680 200613740 -81579924 + GA-rich Low_complexity Low_complexity 4 64 0 303 302 0 72 chr1 200613831 200613970 -81579694 - MIR SINE MIR -24 238 110 355 251 10 131 chr1 200614074 200614273 -81579391 - L3b LINE CR1 -103 1480 1306 361 258 159 25 chr1 200614914 200615077 -81578587 + MIR SINE MIR 78 262 0 417 311 62 22 chr1 200615695 200615920 -81577744 - MIR SINE MIR -14 248 15 1782 111 42 26 chr1 200616237 200616544 -81577120 + AluJb SINE Alu 1 312 0 324 294 46 28 chr1 200616928 200617037 -81576627 - L2 LINE L2 0 3272 3162 255 255 207 21 chr1 200617141 200617329 -81576335 - L2 LINE L2 -456 2858 2636 1526 156 0 83 chr1 200618346 200618647 -81575017 + AluJo SINE Alu 1 276 -36 343 305 80 52 chr1 200619384 200619597 -81574067 - MIR SINE MIR -11 251 33 381 231 111 8 chr1 200619634 200619751 -81573913 + MER5B DNA MER1_type 5 133 -45 231 367 75 8 chr1 200619769 200619889 -81573775 + L2 LINE L2 3126 3253 -19 385 110 27 14 chr1 200619893 200619966 -81573698 + GA-rich Low_complexity Low_complexity 3 76 0 204 315 54 22 chr1 200621328 200621420 -81572244 - L2 LINE L2 -5 3267 3173 877 139 38 5 chr1 200621420 200621640 -81572024 + MER39B LTR ERV1 1 269 -384 474 82 0 0 chr1 200671647 200671708 -81521956 - Alu SINE Alu -248 62 2 229 161 18 0 chr1 200671709 200671765 -81521899 - L1M4 LINE L1 -5248 1294 1238 780 159 15 15 chr1 200671766 200671898 -81521766 - FLAM_C SINE Alu 0 133 2 1056 141 51 0 chr1 200671927 200672083 -81521581 - AluSx SINE Alu -14 296 133 215 127 55 0 chr1 200672083 200672138 -81521526 + (TA)n Simple_repeat Simple_repeat 1 58 0 316 110 49 12 chr1 200672162 200672244 -81521420 + (TA)n Simple_repeat Simple_repeat 1 85 0 2227 116 3 0 chr1 200672244 200672537 -81521127 - AluSg SINE Alu -16 294 1 1158 74 0 0 chr1 200672537 200672672 -81520992 - AluSx SINE Alu -177 135 1 22 35 0 0 chr1 200672719 200672748 -81520916 + AT_rich Low_complexity Low_complexity 1 29 0 1595 122 13 4 chr1 200672751 200672980 -81520684 + AluSq SINE Alu 1 231 -82 368 120 0 0 chr1 200672980 200673030 -81520634 - Alu SINE Alu -253 50 1 1738 146 65 16 chr1 200673031 200673354 -81520310 - L1M4 LINE L1 -5489 1053 715 343 252 149 0 chr1 200673357 200673464 -81520200 - MLT1J LTR MaLR -387 124 2 430 286 9 0 chr1 200673464 200673569 -81520095 - MIR SINE MIR -117 145 40 2137 98 4 4 chr1 200673571 200673871 -81519793 + AluSc SINE Alu 4 303 0 275 306 47 0 chr1 200673891 200673976 -81519688 - MIR SINE MIR -57 151 63 4015 178 92 29 chr1 200675249 200675457 -81518207 - L1MD2 LINE L1 -2 6357 6163 252 0 0 0 chr1 200675457 200675485 -81518179 + (TG)n Simple_repeat Simple_repeat 1 28 0 4015 178 92 29 chr1 200675485 200676221 -81517443 - L1MD2 LINE L1 -196 6163 5373 24 53 0 0 chr1 200676507 200676545 -81517119 + AT_rich Low_complexity Low_complexity 1 38 0 2102 139 0 19 chr1 200676574 200676883 -81516781 - AluSx SINE Alu -9 303 1 950 284 60 67 chr1 200678181 200678395 -81515269 + L1ME3A LINE L1 5327 5541 -629 1502 154 121 11 chr1 200678395 200678667 -81514997 - AluJo SINE Alu -10 302 1 950 284 60 67 chr1 200678667 200679287 -81514377 + L1ME3A LINE L1 5541 6155 -15 558 264 96 6 chr1 200680444 200680611 -81513053 + MER20 DNA MER1_type 1 182 -37 691 135 10 0 chr1 200684000 200684104 -81509560 + AluJb SINE Alu 2 106 -206 180 0 0 0 chr1 200684122 200684142 -81509522 + (CAAT)n Simple_repeat Simple_repeat 4 23 0 1872 147 27 7 chr1 200684510 200684810 -81508854 - MER44D DNA MER2_type -32 577 2 390 319 56 6 chr1 200685650 200685810 -81507854 - MIR SINE MIR -75 187 20 2204 123 3 3 chr1 200685826 200686127 -81507537 - AluSx SINE Alu -11 301 1 651 246 45 36 chr1 200687186 200687406 -81506258 + MIR SINE MIR 35 256 -6 231 294 59 0 chr1 200687436 200687504 -81506160 + L2 LINE L2 3189 3260 -12 1733 139 0 23 chr1 200687504 200687763 -81505901 - AluSx SINE Alu -57 255 3 247 237 74 46 chr1 200687838 200687980 -81505684 + HAL1b LINE L1 1204 6120 -1 2218 118 0 0 chr1 200687994 200688282 -81505382 + AluSx SINE Alu 3 290 -22 4377 106 36 44 chr1 200689525 200690280 -81503384 - L1MA5A LINE L1 -5 6292 5544 577 105 0 12 chr1 200690280 200690366 -81503298 + L1M2 LINE L1 5526 5610 -687 6242 143 36 5 chr1 200690369 200691726 -81501938 - L1MA5A LINE L1 -743 5403 4146 469 255 11 0 chr1 200691941 200692035 -81501629 + MER81 DNA DNA 20 114 0 7250 50 10 1 chr1 200693289 200694343 -81499321 + L1PA6 LINE L1 5092 6153 -1 239 261 98 0 chr1 200694401 200694493 -81499171 + MIR SINE MIR 152 252 -10 30 0 0 0 chr1 200696511 200696541 -81497123 + AT_rich Low_complexity Low_complexity 1 30 0 2050 145 0 0 chr1 200696541 200696830 -81496834 - AluSx SINE Alu -23 289 1 4146 159 57 15 chr1 200698198 200698941 -81494723 - MER21B LTR ERV1 -1 862 89 2018 60 0 45 chr1 200698941 200699206 -81494458 - AluY SINE Alu -17 294 42 191 309 15 0 chr1 200699594 200699662 -81494002 + L3b LINE CR1 1278 1346 -237 971 264 37 69 chr1 200700137 200700516 -81493148 - MLT1E LTR MaLR -24 569 203 8116 139 34 19 chr1 200700516 200701940 -81491724 + L1MCa LINE L1 24 1469 -4957 1827 159 17 0 chr1 200702005 200702294 -81491370 + AluJo SINE Alu 1 294 -18 519 250 0 57 chr1 200702301 200702441 -81491223 - MLT1E LTR MaLR -445 148 17 1132 136 128 33 chr1 200702460 200702703 -81490961 - AluJo SINE Alu -12 300 35 2286 100 0 0 chr1 200703049 200703338 -81490326 - AluSx SINE Alu -22 290 2 595 262 20 35 chr1 200704222 200704424 -81489240 + MIR SINE MIR 28 226 -36 2532 66 0 7 chr1 200705487 200705790 -81487874 - AluSc SINE Alu -8 301 1 2468 51 16 38 chr1 200706709 200707023 -81486641 + AluY SINE Alu 1 307 -4 191 298 85 52 chr1 200707936 200708042 -81485622 + L2 LINE L2 2647 2748 -566 490 258 22 45 chr1 200708042 200708220 -81485444 - MER5B DNA MER1_type -4 174 1 191 298 85 52 chr1 200708220 200708361 -81485303 + L2 LINE L2 2748 2902 -412 2046 148 3 3 chr1 200709482 200709786 -81483878 + AluSx SINE Alu 1 304 -8 432 296 15 51 chr1 200709786 200709982 -81483682 - MIR SINE MIR -52 210 22 277 214 0 71 chr1 200710092 200710162 -81483502 + L1ME4a LINE L1 5840 5904 -217 761 274 86 56 chr1 200710726 200710851 -81482813 + L1MC4a LINE L1 5568 5688 -433 2471 76 0 10 chr1 200710851 200711153 -81482511 + AluY SINE Alu 1 299 -12 761 274 86 56 chr1 200711153 200711435 -81482229 + L1MC4a LINE L1 5688 5987 -134 21 36 0 0 chr1 200711463 200711491 -81482173 + AT_rich Low_complexity Low_complexity 1 28 0 1981 136 10 7 chr1 200711554 200711855 -81481809 + AluJb SINE Alu 1 302 -10 5216 69 38 0 chr1 200711955 200712621 -81481043 - LTR8 LTR ERV1 0 691 1 2238 107 0 23 chr1 200712655 200712963 -81480701 + AluSx SINE Alu 1 301 -11 2095 122 0 46 chr1 200714178 200714506 -81479158 + AluSq SINE Alu 1 313 0 2229 77 29 32 chr1 200716292 200716605 -81477059 - AluSx SINE Alu 0 312 1 2415 103 0 0 chr1 200716937 200717249 -81476415 - AluSx SINE Alu 0 312 1 301 312 30 45 chr1 200717299 200717498 -81476166 + MIR SINE MIR 12 207 -55 263 301 25 118 chr1 200717566 200717685 -81475979 - MER5A DNA MER1_type -5 184 55 1695 133 12 4 chr1 200717685 200717933 -81475731 - AluSx SINE Alu -16 296 47 263 301 25 118 chr1 200717933 200717949 -81475715 - MER5A DNA MER1_type -134 55 39 180 0 0 0 chr1 200717949 200717969 -81475695 + (CCA)n Simple_repeat Simple_repeat 1 20 0 263 301 25 118 chr1 200717969 200718035 -81475629 - MER5A DNA MER1_type -150 39 1 207 0 0 0 chr1 200718398 200718421 -81475243 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2252 115 0 3 chr1 200718678 200718992 -81474672 - AluSq SINE Alu 0 313 1 1993 133 7 0 chr1 200719776 200720054 -81473610 + AluSx SINE Alu 1 280 -32 492 187 52 7 chr1 200720056 200720211 -81473453 + GA-rich Low_complexity Low_complexity 2 163 0 291 188 38 38 chr1 200720231 200720311 -81473353 + MLT1L LTR MaLR 115 194 -421 1112 270 166 19 chr1 200720640 200721073 -81472591 - MLT1J LTR MaLR 0 511 15 284 246 0 0 chr1 200721073 200721130 -81472534 + MLT1L LTR MaLR 559 615 0 282 215 31 0 chr1 200721221 200721286 -81472378 + L2 LINE L2 3246 3312 -1 310 285 126 13 chr1 200721328 200721479 -81472185 + MIR SINE MIR 64 231 -31 2650 141 36 0 chr1 200721870 200722281 -81471383 - MSTB LTR MaLR 0 426 1 2184 119 0 13 chr1 200723444 200723755 -81469909 - AluSx SINE Alu -5 307 1 1093 106 106 46 chr1 200723815 200724032 -81469632 + MER30 DNA MER1_type 1 230 0 1615 192 30 91 chr1 200724274 200724672 -81468992 - MER63B DNA MER1_type -626 436 68 2273 100 7 0 chr1 200724672 200724973 -81468691 + AluSx SINE Alu 1 303 -9 1615 192 30 91 chr1 200724973 200725038 -81468626 - MER63B DNA MER1_type -994 68 1 2074 140 0 10 chr1 200725207 200725514 -81468150 - AluJb SINE Alu -8 304 1 2258 75 0 7 chr1 200725639 200725920 -81467744 + AluSg1 SINE Alu 1 279 -30 240 35 0 0 chr1 200725923 200725952 -81467712 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2266 112 0 13 chr1 200726578 200726892 -81466772 + AluSg SINE Alu 1 310 0 742 258 16 26 chr1 200727844 200728034 -81465630 + L1ME1 LINE L1 5974 6161 -5 598 281 30 0 chr1 200728114 200728278 -81465386 + MER91A DNA MER1_type 15 183 -13 418 345 78 31 chr1 200728292 200728674 -81464990 - L2 LINE L2 -61 3252 2853 247 279 186 23 chr1 200728769 200728898 -81464766 - MIR3 SINE MIR -11 197 48 194 196 0 22 chr1 200728908 200728954 -81464710 - L2 LINE L2 -4 3309 3265 2060 139 0 23 chr1 200729009 200729318 -81464346 + AluSx SINE Alu 1 302 -10 2280 107 0 0 chr1 200729463 200729762 -81463902 - AluSx SINE Alu -13 299 1 371 296 7 21 chr1 200731335 200731477 -81462187 - MER20B DNA MER1_type -623 160 21 2249 124 0 0 chr1 200732334 200732641 -81461023 + AluSq SINE Alu 1 307 -6 1750 164 4 7 chr1 200732936 200733217 -81460447 + AluSx SINE Alu 1 280 -32 309 51 0 0 chr1 200733220 200733259 -81460405 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr1 200733281 200733308 -81460356 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 2331 173 43 16 chr1 200733346 200733790 -81459874 + L1MC4 LINE L1 7402 7857 -185 367 269 134 30 chr1 200733799 200733883 -81459781 + MIR3 SINE MIR 54 159 -49 763 201 118 0 chr1 200733883 200734052 -81459612 + MER5A DNA MER1_type 1 189 0 367 269 134 30 chr1 200734052 200734101 -81459563 + MIR3 SINE MIR 159 201 -7 23 33 0 0 chr1 200734792 200734822 -81458842 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr1 200734980 200735014 -81458650 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1777 157 0 17 chr1 200735016 200735303 -81458361 - AluJo SINE Alu -30 282 1 325 290 32 13 chr1 200735382 200735537 -81458127 + MIR SINE MIR 102 259 -3 2222 117 0 0 chr1 200736377 200736667 -81456997 + AluSx SINE Alu 1 290 -22 306 214 0 29 chr1 200736706 200736776 -81456888 + AluJo SINE Alu 86 153 -149 1846 131 0 0 chr1 200736782 200737041 -81456623 + AluJo SINE Alu 41 299 -13 447 292 67 8 chr1 200737507 200737765 -81455899 + MER115 DNA AcHobo 130 425 -268 877 168 7 0 chr1 200737799 200737942 -81455722 + Zaphod DNA AcHobo 3888 4031 0 384 283 23 68 chr1 200738029 200738118 -81455546 + L2 LINE L2 2911 2990 -282 2316 57 0 11 chr1 200738118 200738401 -81455263 - AluY SINE Alu 0 311 32 384 283 23 68 chr1 200738401 200738488 -81455176 + L2 LINE L2 2990 3079 -193 365 254 53 9 chr1 200738596 200738710 -81454954 - MIR SINE MIR -37 225 107 2229 101 3 7 chr1 200738913 200739220 -81454444 + AluSq SINE Alu 1 306 -7 224 232 36 0 chr1 200739438 200739494 -81454170 - MIR SINE MIR -137 125 68 2413 213 53 11 chr1 200740281 200740849 -81452815 - L1ME1 LINE L1 -44 6122 5531 671 262 55 31 chr1 200741781 200742071 -81451593 + L1MD2 LINE L1 6062 6358 -1 2397 70 10 0 chr1 200742109 200742407 -81451257 - AluY SINE Alu -10 301 1 2304 87 0 3 chr1 200742421 200742742 -81450922 + AluSq SINE Alu 1 320 0 2108 168 20 106 chr1 200742872 200743373 -81450291 + LTR32 LTR ERVL 14 471 0 553 318 62 16 chr1 200744561 200744803 -81448861 - MIR SINE MIR -2 260 8 1684 194 24 18 chr1 200744954 200745289 -81448375 - MER58B DNA MER1_type 0 341 5 21 36 0 0 chr1 200747057 200747085 -81446579 + AT_rich Low_complexity Low_complexity 1 28 0 2134 144 0 0 chr1 200747480 200747792 -81445872 + AluSx SINE Alu 1 312 0 510 172 0 0 chr1 200747793 200747892 -81445772 + GA-rich Low_complexity Low_complexity 2 100 0 181 132 132 0 chr1 200747973 200748011 -81445653 - L2 LINE L2 -9 3304 3262 2133 125 0 0 chr1 200748711 200749042 -81444622 - AluSq SINE Alu 0 313 1 2214 216 93 47 chr1 200749044 200749918 -81443746 - L1MC4 LINE L1 -1 8041 6947 2461 89 0 3 chr1 200749918 200750220 -81443444 - AluSg SINE Alu -9 301 1 2214 216 93 47 chr1 200750220 200750559 -81443105 - L1MC4 LINE L1 -1095 6947 6625 3677 135 92 2 chr1 200750559 200751226 -81442438 - Tigger7 DNA MER2_type 0 2487 11 739 253 59 10 chr1 200751227 200751429 -81442235 - L1MC4 LINE L1 -1355 6687 6476 637 201 120 4 chr1 200751425 200751658 -81442006 - L1MC4 LINE L1 -675 7367 6961 * 1986 96 0 4 chr1 200751658 200751908 -81441756 - AluSg SINE Alu -8 302 54 819 178 20 0 chr1 200751909 200752061 -81441603 + Tigger7 DNA MER2_type 162 316 -2171 397 228 69 55 chr1 200754980 200755125 -81438539 - MER5A DNA MER1_type -22 167 21 291 313 44 40 chr1 200755129 200755356 -81438308 + L2 LINE L2 2126 2353 -961 1921 91 8 0 chr1 200755893 200756145 -81437519 + AluSx SINE Alu 58 311 -1 22 0 0 0 chr1 200756193 200756215 -81437449 + AT_rich Low_complexity Low_complexity 1 22 0 974 137 30 71 chr1 200756347 200756544 -81437120 - MER53 DNA DNA 0 189 1 2074 129 0 19 chr1 200756729 200757039 -81436625 + AluSx SINE Alu 1 304 -8 347 204 82 10 chr1 200758078 200758176 -81435488 + MIR SINE MIR 109 213 -49 2550 56 0 3 chr1 200758200 200758502 -81435162 - AluY SINE Alu -10 301 1 520 236 173 60 chr1 200758962 200759314 -81434350 + L2 LINE L2 2052 2443 -871 1701 122 4 0 chr1 200759334 200759571 -81434093 - AluSx SINE Alu -16 296 59 6517 146 52 6 chr1 200809571 200810756 -81382908 + L1 LINE L1 3764 5003 -1143 913 98 16 0 chr1 200810811 200810934 -81382730 + AluSg/x SINE Alu 170 294 -16 227 167 0 33 chr1 200810961 200811010 -81382654 + FRAM SINE Alu 40 88 -214 1782 171 0 41 chr1 200811010 200811326 -81382338 + AluSx SINE Alu 1 303 -9 8916 111 18 16 chr1 200811326 200811800 -81381864 + Tigger4(Zombi) DNA MER2_type 493 965 -1766 2509 116 30 50 chr1 200811800 200812241 -81381423 - MSTB1 LTR MaLR 0 432 1 8916 111 18 16 chr1 200812241 200813101 -81380563 + Tigger4(Zombi) DNA MER2_type 965 1829 -902 21 0 0 0 chr1 200813243 200813264 -81380400 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr1 200813670 200813712 -81379952 + GC_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 200813736 200813758 -81379906 + GC_rich Low_complexity Low_complexity 1 22 0 738 172 8 0 chr1 200814939 200815067 -81378597 - FLAM_A SINE Alu -8 134 6 285 286 0 53 chr1 200815453 200815586 -81378078 - L2 LINE L2 0 3313 3188 571 289 113 21 chr1 200816913 200817152 -81376512 + L2 LINE L2 3040 3300 -13 1077 178 32 0 chr1 200817270 200817455 -81376209 + MER46A DNA MER2_type 1 191 -45 22 35 0 0 chr1 200817594 200817623 -81376041 + AT_rich Low_complexity Low_complexity 1 29 0 2279 105 7 0 chr1 200817644 200817950 -81375714 - AluSx SINE Alu -4 308 1 522 307 39 0 chr1 200817950 200818129 -81375535 + MIR SINE MIR 77 262 0 608 256 237 0 chr1 200818673 200818880 -81374784 + MIR SINE MIR 2 257 -5 2155 135 3 0 chr1 200819013 200819324 -81374340 + AluSx SINE Alu 1 312 0 209 314 88 39 chr1 200819585 200819687 -81373977 - L2 LINE L2 -15 3257 3151 2109 144 0 0 chr1 200821358 200821664 -81372000 - AluSx SINE Alu -6 306 1 1437 158 16 32 chr1 200821947 200822200 -81371464 + AluJo SINE Alu 28 276 -36 536 0 0 15 chr1 200822205 200822270 -81371394 + (GAAA)n Simple_repeat Simple_repeat 1 64 0 716 158 0 0 chr1 200822275 200822389 -81371275 + FRAM SINE Alu 32 145 -31 718 48 38 0 chr1 200822389 200822494 -81371170 + (GAAA)n Simple_repeat Simple_repeat 1 109 0 362 163 0 12 chr1 200822527 200822607 -81371057 + GA-rich Low_complexity Low_complexity 2 80 0 213 182 0 0 chr1 200822608 200822641 -81371023 + polypurine Low_complexity Low_complexity 2 34 0 985 173 120 5 chr1 200822746 200822954 -81370710 - Tigger2 DNA MER2_type 0 2718 2487 4344 132 25 10 chr1 200823025 200823740 -81369924 - Tigger2 DNA MER2_type -1991 727 2 522 258 136 0 chr1 200823752 200823950 -81369714 + L1ME LINE L1 5496 5720 -401 353 316 95 43 chr1 200824543 200824774 -81368890 + L2 LINE L2 2431 2673 -641 225 225 73 99 chr1 200824809 200824960 -81368704 - HAL1 LINE L1 -6 2501 2355 23 0 0 0 chr1 200824960 200824983 -81368681 + AT_rich Low_complexity Low_complexity 1 23 0 323 23 0 0 chr1 200824985 200825028 -81368636 - L1PA4 LINE L1 -3 6152 6110 793 260 153 14 chr1 200825490 200825836 -81367828 - L1MC4a LINE L1 -1913 5895 5502 1722 180 0 7 chr1 200825874 200826179 -81367485 - AluJo SINE Alu -7 305 3 581 228 41 122 chr1 200826188 200826556 -81367108 - HAL1 LINE L1 -1357 1150 813 723 283 157 28 chr1 200826581 200826977 -81366687 - HAL1 LINE L1 -2044 463 17 619 300 95 9 chr1 200828049 200828259 -81365405 + MIR SINE MIR 21 248 -14 1765 266 72 17 chr1 200828919 200829642 -81364022 - L1ME3A LINE L1 -213 5957 5198 33 0 0 0 chr1 200829657 200829690 -81363974 + AT_rich Low_complexity Low_complexity 1 33 0 1747 155 7 48 chr1 200829771 200830081 -81363583 - AluJb SINE Alu -15 297 1 192 313 48 24 chr1 200830435 200830518 -81363146 - L3 LINE CR1 -132 1445 1361 347 289 173 0 chr1 200830656 200830829 -81362835 - L3 LINE CR1 -202 1375 1173 586 252 144 44 chr1 200830921 200831350 -81362314 + MLT1K LTR MaLR 3 474 -2 293 289 41 0 chr1 200831403 200831500 -81362164 - L3 LINE CR1 -442 1135 1035 6130 10 1 4 chr1 200831781 200832637 -81361027 + L1PA3 LINE L1 5099 5952 -203 208 307 203 12 chr1 200833077 200833240 -81360424 + L2 LINE L2 596 789 -2525 2217 105 0 0 chr1 200833527 200833813 -81359851 - AluSq SINE Alu -27 286 1 966 201 16 16 chr1 200833870 200834054 -81359610 - MLT1E LTR MaLR -402 191 8 194 91 30 0 chr1 200834786 200834819 -81358845 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 3681 205 42 55 chr1 200835763 200837271 -81356393 + L1MCb LINE L1 6 1489 -4851 202 343 108 10 chr1 200837947 200838049 -81355615 - MIR SINE MIR -74 134 23 226 273 207 8 chr1 200839494 200839615 -81354049 - L2 LINE L2 -7 3306 3162 929 233 29 61 chr1 200839979 200840322 -81353342 + MER46C DNA MER2_type 3 334 -4 454 278 112 38 chr1 200840481 200840848 -81352816 + L1MEd LINE L1 14 407 -5712 1772 181 0 13 chr1 200840955 200841269 -81352395 + AluJb SINE Alu 1 310 -2 259 299 34 20 chr1 200841296 200841443 -81352221 + L1MCc LINE L1 24 172 -6251 2272 98 0 0 chr1 200841875 200842170 -81351494 - AluSx SINE Alu -17 295 1 1056 222 51 8 chr1 200843371 200843605 -81350059 - MIR SINE MIR 0 262 19 2355 75 7 10 chr1 200843770 200844076 -81349588 + AluSq SINE Alu 1 305 -8 456 286 153 47 chr1 200844130 200844431 -81349233 - Charlie8 DNA MER1_type -1887 530 198 217 286 0 0 chr1 200844454 200844503 -81349161 - MIR SINE MIR -212 50 2 472 300 33 22 chr1 200844814 200844994 -81348670 - MLT1K LTR MaLR -248 340 159 393 226 129 16 chr1 200845889 200846013 -81347651 - MIR SINE MIR -13 249 112 * 692 231 25 12 chr1 200846008 200846168 -81347496 - MIR SINE MIR -69 193 32 2304 111 0 0 chr1 200846178 200846484 -81347180 + AluSx SINE Alu 1 306 -6 646 224 81 92 chr1 200847252 200847735 -81345929 + Charlie2 DNA MER1_type 285 1017 -1845 380 167 83 19 chr1 200847732 200847840 -81345824 + Charlie2 DNA MER1_type 2748 2862 0 * 337 291 98 16 chr1 200847934 200848188 -81345476 + L1MCc LINE L1 2084 2358 -4764 639 318 127 37 chr1 200848212 200848724 -81344940 + L1MCc LINE L1 2432 2989 -4133 277 269 41 7 chr1 200848794 200848939 -81344725 + L1MCc LINE L1 3600 3749 -3192 854 278 104 50 chr1 200848998 200849494 -81344170 + L1MCc LINE L1 3885 4447 -2494 2042 130 7 3 chr1 200849494 200849794 -81343870 + AluSg SINE Alu 1 301 -9 854 278 104 50 chr1 200849794 200850143 -81343521 + L1MCc LINE L1 4447 4776 -2165 535 248 45 13 chr1 200850183 200850340 -81343324 + MLT1H LTR MaLR 80 241 -308 2366 106 0 3 chr1 200850345 200850656 -81343008 + AluSx SINE Alu 1 310 -2 401 138 15 0 chr1 200850676 200850741 -81342923 + MLT1H LTR MaLR 356 421 -46 1222 260 58 58 chr1 200850744 200851394 -81342270 + L1MCc LINE L1 5202 5852 -1089 1143 164 0 0 chr1 200851394 200851565 -81342099 + AluSq SINE Alu 1 171 -142 5377 204 21 13 chr1 200851665 200852920 -81340744 - L1 LINE L1 -1703 4443 3179 3554 86 29 23 chr1 200852924 200853484 -81340180 - L1MA2 LINE L1 0 6304 5742 6449 168 17 24 chr1 200853487 200854830 -81338834 - L1MA2 LINE L1 -743 5403 4070 1717 220 61 8 chr1 200854840 200855313 -81338351 - L1PA15-16 LINE L1 -3471 3378 2881 * 2205 125 8 14 chr1 200855312 200855639 -81338025 - L1PA15-16 LINE L1 -4355 2494 2168 1906 158 13 3 chr1 200855639 200855942 -81337722 - AluSx SINE Alu -6 306 1 2205 125 8 14 chr1 200855942 200855975 -81337689 - L1PA15-16 LINE L1 -4681 2168 2136 1034 74 0 7 chr1 200855975 200856110 -81337554 + AluY SINE Alu 162 295 -16 771 135 43 43 chr1 200856110 200856220 -81337444 - L1PA15-16 LINE L1 -4703 2146 2037 186 43 0 0 chr1 200856220 200856243 -81337421 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1743 138 0 0 chr1 200856246 200856486 -81337178 - AluSx SINE Alu -31 281 42 771 135 43 43 chr1 200856486 200856534 -81337130 - L1PA15-16 LINE L1 -4813 2036 1984 5644 115 21 9 chr1 200856537 200858351 -81335313 - L1PA15 LINE L1 -9 6156 4312 1141 230 26 14 chr1 200858353 200858701 -81334963 - L1PA15 LINE L1 -3190 2956 2605 1211 254 96 49 chr1 200858890 200859237 -81334427 - HAL1 LINE L1 -302 2205 1876 2342 82 13 3 chr1 200859237 200859540 -81334124 - AluSp SINE Alu -7 306 1 1211 254 96 49 chr1 200859540 200859815 -81333849 - HAL1 LINE L1 -631 1876 1616 2300 119 3 0 chr1 200859815 200860125 -81333539 - AluSx SINE Alu -1 311 1 1211 254 96 49 chr1 200860125 200860309 -81333355 - HAL1 LINE L1 -891 1616 1333 386 284 60 0 chr1 200860352 200860468 -81333196 - MER58B DNA MER1_type -1 340 218 960 251 101 34 chr1 200860493 200860820 -81332844 - L2 LINE L2 -1748 1566 1218 2136 103 0 3 chr1 200860830 200861141 -81332523 - AluY SINE Alu 0 310 1 430 266 66 71 chr1 200861142 200861513 -81332151 - L1M4 LINE L1 -2066 4080 3712 1165 262 47 28 chr1 200861657 200862305 -81331359 + L1MB8 LINE L1 5028 5691 -479 1749 177 44 10 chr1 200862305 200862896 -81330768 + L1ME3A LINE L1 5038 5641 -543 1044 157 46 5 chr1 200862904 200863120 -81330544 + L1MB8 LINE L1 5951 6175 -3 941 223 40 94 chr1 200863581 200863953 -81329711 + L1ME3A LINE L1 5695 6046 -124 1203 109 44 96 chr1 200863958 200864187 -81329477 - AluSg/x SINE Alu 0 310 94 249 216 41 21 chr1 200864191 200864288 -81329376 + L1ME3 LINE L1 6064 6162 0 292 257 154 0 chr1 200864393 200864568 -81329096 - L1ME LINE L1 -298 5823 5622 1967 135 14 3 chr1 200864709 200865005 -81328659 - AluSx SINE Alu -13 299 1 1934 122 14 14 chr1 200865159 200865453 -81328211 + AluJb SINE Alu 1 294 -18 1256 159 10 19 chr1 200865679 200865887 -81327777 - AluJo SINE Alu -106 206 1 1663 188 10 26 chr1 200866753 200867061 -81326603 - AluJb SINE Alu -9 303 1 307 331 67 56 chr1 200868765 200868943 -81324721 + MIR3 SINE MIR 8 187 -21 969 120 0 0 chr1 200869042 200869175 -81324489 - FLAM_C SINE Alu 0 133 1 333 233 68 14 chr1 200869256 200869329 -81324335 + L2 LINE L2 3193 3269 -44 2005 143 13 3 chr1 200869749 200870049 -81323615 - AluSx SINE Alu -9 303 1 2218 131 0 0 chr1 200870533 200870839 -81322825 + AluSx SINE Alu 1 306 -6 2257 104 0 7 chr1 200871041 200871350 -81322314 - AluSx SINE Alu -5 307 1 336 199 134 129 chr1 200871351 200871412 -81322252 - L1MC4 LINE L1 -183 7859 7800 2295 87 0 0 chr1 200871412 200871711 -81321953 - AluSq SINE Alu -14 299 1 336 199 134 129 chr1 200871711 200871820 -81321844 - L1MC4 LINE L1 -242 7800 7688 366 271 47 8 chr1 200871937 200872066 -81321598 - MER113 DNA MER1_type? -114 407 274 2939 231 48 22 chr1 200872084 200872383 -81321281 + L1MEc LINE L1 1976 2266 -3949 2381 88 7 0 chr1 200872383 200872688 -81320976 + AluSc SINE Alu 1 307 -2 2939 231 48 22 chr1 200872688 200873461 -81320203 + L1MEc LINE L1 2266 3051 -3164 1494 181 57 30 chr1 200873461 200873760 -81319904 + AluJo SINE Alu 1 307 -5 2939 231 48 22 chr1 200873760 200873921 -81319743 + L1MEc LINE L1 3051 3206 -3009 371 282 160 0 chr1 200874113 200874326 -81319338 + L1MEc LINE L1 3265 3511 -2704 2952 202 20 13 chr1 200874428 200875135 -81318529 - L1PA13 LINE L1 -3611 3186 2475 2013 88 96 32 chr1 200875135 200875509 -81318155 + MSTA LTR MaLR 1 398 -30 406 136 0 0 chr1 200875509 200875575 -81318089 - AluS SINE Alu -17 293 228 6439 102 29 14 chr1 200875587 200876622 -81317042 - MER11C LTR ERVK -14 1057 8 1593 152 4 35 chr1 200876622 200876878 -81316786 - AluSq SINE Alu -65 248 1 2827 189 86 21 chr1 200876915 200877799 -81315865 - L1PA13 LINE L1 -4317 2480 1541 538 158 11 32 chr1 200878297 200878392 -81315272 - AluJ/FLAM SINE Alu -219 93 1 7595 164 46 74 chr1 200878392 200880362 -81313302 - L1PA15-16 LINE L1 -4858 1991 78 1906 153 0 23 chr1 200880365 200880673 -81312991 - AluJb SINE Alu -11 301 1 571 256 116 29 chr1 200880821 200881235 -81312429 - L1ME LINE L1 -322 5799 5350 440 220 147 33 chr1 200881472 200881622 -81312042 + MIR3 SINE MIR 1 167 -41 1560 240 136 46 chr1 200881803 200882760 -81310904 - L1MD3 LINE L1 -1 8041 7017 2209 112 0 3 chr1 200883010 200883343 -81310321 - AluSq SINE Alu 0 313 1 999 181 152 29 chr1 200883688 200883909 -81309755 - MER2 DNA MER2_type -1 344 81 2351 82 0 0 chr1 200883909 200884203 -81309461 - AluSc SINE Alu -10 299 6 999 181 152 29 chr1 200884203 200884257 -81309407 - MER2 DNA MER2_type -264 81 35 2211 78 3 36 chr1 200884458 200884765 -81308899 - AluY SINE Alu -14 297 1 1185 195 173 28 chr1 200885806 200885938 -81307726 + L1ME1 LINE L1 5474 5585 -581 2265 120 0 0 chr1 200885938 200886237 -81307427 + AluSx SINE Alu 3 301 -11 1185 195 173 28 chr1 200886237 200886468 -81307196 + L1ME1 LINE L1 5585 5890 -276 2446 77 7 0 chr1 200886469 200886768 -81306896 + AluSx SINE Alu 1 301 -11 424 154 0 96 chr1 200886883 200886987 -81306677 - FLAM_C SINE Alu 0 143 50 22 0 0 0 chr1 200887075 200887097 -81306567 + AT_rich Low_complexity Low_complexity 1 22 0 1705 126 4 0 chr1 200887103 200887333 -81306331 + AluSq SINE Alu 1 231 -82 1761 170 0 50 chr1 200887711 200888028 -81305636 + AluJb SINE Alu 1 301 -11 957 205 56 19 chr1 200888071 200888286 -81305378 - MER58A DNA MER1_type -1 223 1 208 376 41 18 chr1 200888580 200888750 -81304914 + L2 LINE L2 2595 2768 -546 285 344 37 37 chr1 200889086 200889249 -81304415 + L2 LINE L2 2897 3059 -213 3606 184 41 25 chr1 200890131 200890935 -81302729 - Tigger2 DNA MER2_type -1876 842 26 1052 221 153 32 chr1 200890937 200891276 -81302388 + L1MD2 LINE L1 5954 6333 -26 273 70 70 35 chr1 200891272 200891329 -81302335 + L1MD3 LINE L1 7927 7985 -10 * 27 29 0 0 chr1 200892904 200892938 -81300726 + AT_rich Low_complexity Low_complexity 1 34 0 1270 246 43 30 chr1 200893068 200893507 -81300157 - HAL1 LINE L1 -606 1901 1457 449 263 100 27 chr1 200893538 200893838 -81299826 - HAL1 LINE L1 -1244 1263 942 1227 203 42 55 chr1 200894022 200894148 -81299516 - Charlie4a DNA MER1_type -1567 394 268 1677 194 3 10 chr1 200894148 200894442 -81299222 + AluJo SINE Alu 3 294 -18 1227 203 42 55 chr1 200894442 200894695 -81298969 - Charlie4a DNA MER1_type -1693 268 20 372 251 251 19 chr1 200894720 200894931 -81298733 - HAL1 LINE L1 -1629 878 619 973 257 133 85 chr1 200895301 200895969 -81297695 - L1MEd LINE L1 -4906 1213 471 1481 158 91 11 chr1 200895969 200896234 -81297430 - AluJo SINE Alu -15 297 12 973 257 133 85 chr1 200896234 200896667 -81296997 - L1MEd LINE L1 -5648 471 60 850 284 38 11 chr1 200896769 200897030 -81296634 - MLT1H1 LTR MaLR -262 293 26 800 158 16 0 chr1 200897062 200897189 -81296475 + FLAM_A SINE Alu 1 129 -4 1948 154 0 10 chr1 200897197 200897496 -81296168 + AluSx SINE Alu 1 296 -16 23 33 0 0 chr1 200898055 200898085 -81295579 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 200898383 200898407 -81295257 + AT_rich Low_complexity Low_complexity 1 24 0 1189 178 91 46 chr1 200899089 200899729 -81293935 - LTR49 LTR ERV1 0 729 1 2226 109 3 3 chr1 200900024 200900328 -81293336 - AluSx SINE Alu -8 304 1 1605 154 65 82 chr1 200900650 200901052 -81292612 - MLT2C1 LTR ERVL -2 395 1 689 224 58 82 chr1 200901344 200901540 -81292124 - L1ME LINE L1 -351 5811 5612 1593 200 21 11 chr1 200901540 200901707 -81291957 - AluJb SINE Alu -24 288 115 189 0 0 0 chr1 200901707 200901728 -81291936 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1593 200 21 11 chr1 200901728 200901845 -81291819 - AluJb SINE Alu -197 115 1 689 224 58 82 chr1 200901845 200902166 -81291498 - L1ME LINE L1 -550 5612 5304 2063 121 10 16 chr1 200902166 200902479 -81291185 - AluSx SINE Alu 0 312 2 689 224 58 82 chr1 200902479 200902529 -81291135 - L1ME LINE L1 -858 5304 5254 654 122 26 90 chr1 200902644 200902800 -81290864 - MLT1A1 LTR MaLR 0 365 220 2268 218 98 37 chr1 200902908 200903804 -81289860 - L1ME3 LINE L1 -221 5924 5084 2305 100 3 3 chr1 200903804 200904103 -81289561 - AluSx SINE Alu -13 299 1 2268 218 98 37 chr1 200904103 200904173 -81289491 - L1ME3 LINE L1 -1061 5084 5020 2005 105 68 14 chr1 200904173 200904467 -81289197 + AluSx SINE Alu 1 310 -2 2268 218 98 37 chr1 200904467 200904997 -81288667 - L1ME3 LINE L1 -1125 5020 4324 2230 116 3 0 chr1 200905174 200905477 -81288187 + AluSx SINE Alu 1 304 -8 1804 181 0 13 chr1 200906074 200906388 -81287276 - AluJb SINE Alu -2 310 1 345 278 112 38 chr1 200906495 200906862 -81286802 - L1ME3 LINE L1 -5712 407 14 897 236 29 61 chr1 200907021 200907364 -81286300 - MER46C DNA MER2_type -4 334 3 219 273 207 8 chr1 200907728 200907849 -81285815 + L2 LINE L2 3162 3306 -7 31 58 0 0 chr1 200909427 200909479 -81284185 + AT_rich Low_complexity Low_complexity 1 52 0 1591 159 16 12 chr1 200909959 200910217 -81283447 - AluJo SINE Alu -53 259 1 3081 280 127 33 chr1 200910408 200911620 -81282044 - L2 LINE L2 -38 3275 2178 2416 71 0 13 chr1 200911620 200911928 -81281736 + AluY SINE Alu 2 305 -6 3081 280 127 33 chr1 200911928 200912587 -81281077 - L2 LINE L2 -1135 2178 844 344 318 34 27 chr1 200912589 200912737 -81280927 - L2 LINE L2 -2591 723 575 931 163 146 11 chr1 200912762 200912812 -81280852 - MER3 DNA MER1_type -6 203 161 180 0 0 0 chr1 200912812 200912832 -81280832 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 931 163 146 11 chr1 200912832 200912959 -81280705 - MER3 DNA MER1_type -48 161 2 370 216 399 48 chr1 200912984 200913192 -81280472 - L2 LINE L2 -2782 532 252 180 0 0 0 chr1 200913198 200913218 -81280446 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2139 161 89 30 chr1 200913346 200913807 -81279857 + L1MB3 LINE L1 5695 6182 -1 371 295 13 0 chr1 200913876 200914032 -81279632 + L1ME LINE L1 4372 4529 -1617 5391 141 64 44 chr1 200914090 200914488 -81279176 + L1MA9 LINE L1 4273 4661 -1651 2778 3 0 3 chr1 200914488 200914790 -81278874 - AluYa5 SINE Alu -10 301 1 5391 141 64 44 chr1 200914790 200915319 -81278345 + L1MA9 LINE L1 4661 5178 -1134 1904 150 67 3 chr1 200915319 200915646 -81278018 - MER7A DNA MER2_type 0 346 1 5391 141 64 44 chr1 200915646 200916390 -81277274 + L1MA9 LINE L1 5178 5905 -407 2043 133 60 0 chr1 200916390 200916707 -81276957 + MER1B DNA MER1_type 1 336 -1 5391 141 64 44 chr1 200916707 200916836 -81276828 + L1MA9 LINE L1 5905 6030 -282 2147 135 0 0 chr1 200916836 200917140 -81276524 - AluSx SINE Alu -8 304 1 5391 141 64 44 chr1 200917140 200917324 -81276340 + L1MA9 LINE L1 6030 6307 -5 612 278 72 74 chr1 200917332 200917930 -81275734 + L1ME LINE L1 4637 5233 -913 261 222 0 71 chr1 200918060 200918159 -81275505 + L1ME LINE L1 5808 5899 -271 336 317 96 12 chr1 200918452 200918619 -81275045 - L2 LINE L2 -3119 195 15 21 36 0 0 chr1 200920236 200920264 -81273400 + AT_rich Low_complexity Low_complexity 1 28 0 1938 146 7 0 chr1 200921864 200922172 -81271492 - AluSx SINE Alu 0 311 2 250 304 15 89 chr1 200922447 200922476 -81271188 - MIR3 SINE MIR -21 187 157 2236 131 0 0 chr1 200922476 200922788 -81270876 - AluSx SINE Alu 0 312 1 250 304 15 89 chr1 200922788 200922893 -81270771 - MIR3 SINE MIR -51 157 63 334 313 189 19 chr1 200923601 200923864 -81269800 + L2 LINE L2 1853 2070 -1244 1965 157 6 6 chr1 200923864 200924176 -81269488 - AluJo SINE Alu 0 312 1 334 313 189 19 chr1 200924176 200924330 -81269334 + L2 LINE L2 2070 2341 -973 205 236 0 83 chr1 200924392 200924464 -81269200 + L2 LINE L2 2323 2388 -926 42043 50 7 1 chr1 200924643 200930811 -81262853 + L1PA2 LINE L1 1 6204 0 368 100 0 13 chr1 200931993 200932213 -81261451 + AluSx SINE Alu 1 296 -4 21 0 0 0 chr1 200932405 200932426 -81261238 + AT_rich Low_complexity Low_complexity 1 21 0 205 218 257 40 chr1 200932551 200932652 -81261012 + L2 LINE L2 3180 3302 -11 294 330 0 11 chr1 200932822 200932910 -81260754 - L2 LINE L2 -28 3285 3199 388 236 132 35 chr1 200933944 200934088 -81259576 - MIR SINE MIR -10 252 95 2444 83 0 0 chr1 200934259 200934559 -81259105 + AluSq SINE Alu 1 300 -13 2076 142 0 7 chr1 200935124 200935426 -81258238 + AluJo SINE Alu 3 302 -10 1753 133 85 0 chr1 200935755 200936025 -81257639 - AluSx SINE Alu -19 293 1 915 217 60 30 chr1 200936135 200936370 -81257294 - MIR SINE MIR -19 243 2 22 56 0 0 chr1 200937601 200937637 -81256027 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 200937833 200937854 -81255810 + AT_rich Low_complexity Low_complexity 1 21 0 189 154 0 0 chr1 200938776 200938815 -81254849 + A-rich Low_complexity Low_complexity 2 40 0 978 250 157 29 chr1 200939128 200939504 -81254160 + L2 LINE L2 2886 3309 -4 21 57 0 0 chr1 200940998 200941033 -81252631 + AT_rich Low_complexity Low_complexity 1 35 0 258 223 160 0 chr1 200941186 200941280 -81252384 - L1ME LINE L1 -309 5812 5704 21 0 0 0 chr1 200941308 200941329 -81252335 + AT_rich Low_complexity Low_complexity 1 21 0 419 208 31 0 chr1 200941464 200941560 -81252104 - MER103 DNA DNA -9 157 59 201 344 32 54 chr1 200941754 200941847 -81251817 - MIR SINE MIR -164 98 8 200 269 134 17 chr1 200942351 200942470 -81251194 + L2 LINE L2 3177 3309 -4 22 0 0 0 chr1 200942573 200942595 -81251069 + AT_rich Low_complexity Low_complexity 1 22 0 587 200 7 26 chr1 200942675 200942899 -81250765 - L1ME LINE L1 -2164 3916 686 248 182 39 39 chr1 200942948 200943025 -81250639 - L1P LINE L1 -2220 3926 3850 29 90 0 0 chr1 200943026 200943104 -81250560 + AT_rich Low_complexity Low_complexity 1 78 0 288 0 0 0 chr1 200943298 200943330 -81250334 + (TA)n Simple_repeat Simple_repeat 2 33 0 1379 153 35 93 chr1 200943339 200943652 -81250012 - AluJo SINE Alu -7 295 1 290 233 0 0 chr1 200943653 200943713 -81249951 - L1M4 LINE L1 -2290 3856 3797 21 0 0 0 chr1 200943855 200943876 -81249788 + AT_rich Low_complexity Low_complexity 1 21 0 182 250 68 45 chr1 200944173 200944261 -81249403 - L2 LINE L2 -777 2537 2448 21 36 0 0 chr1 200945263 200945291 -81248373 + AT_rich Low_complexity Low_complexity 1 28 0 1355 56 0 0 chr1 200946497 200946657 -81247007 - AluSc SINE Alu -9 300 141 2014 59 3 69 chr1 200946791 200947080 -81246584 - AluY SINE Alu -9 302 33 1300 145 54 22 chr1 200947534 200947810 -81245854 - L1MB3 LINE L1 -15 6168 5884 514 229 172 13 chr1 200948100 200948257 -81245407 - MIR3 SINE MIR -7 201 20 244 218 176 14 chr1 200948723 200948865 -81244799 - Charlie7 DNA MER1_type 0 2612 2448 228 35 0 0 chr1 200948962 200948991 -81244673 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2163 87 7 7 chr1 200948992 200949267 -81244397 - AluSx SINE Alu -36 276 2 354 23 0 0 chr1 200949685 200949728 -81243936 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr1 200949728 200949748 -81243916 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 528 155 217 16 chr1 200950071 200950200 -81243464 - MIR SINE MIR -33 229 75 198 314 63 63 chr1 200951533 200951724 -81241940 - L2 LINE L2 -1896 1418 1228 21 36 0 0 chr1 200953035 200953063 -81240601 + AT_rich Low_complexity Low_complexity 1 28 0 214 250 18 0 chr1 200953735 200953791 -81239873 - MIR3 SINE MIR -16 192 136 866 243 68 17 chr1 200954260 200954495 -81239169 - MIR SINE MIR 0 262 16 22 35 0 0 chr1 200955514 200955543 -81238121 + AT_rich Low_complexity Low_complexity 1 29 0 34 0 0 0 chr1 200955903 200955937 -81237727 + AT_rich Low_complexity Low_complexity 1 34 0 262 264 144 72 chr1 200956373 200956623 -81237041 + L3b LINE CR1 1274 1541 -42 25 31 0 0 chr1 200957803 200957835 -81235829 + AT_rich Low_complexity Low_complexity 1 32 0 333 245 41 31 chr1 200958914 200959012 -81234652 + MIR3 SINE MIR 64 162 -46 238 321 62 0 chr1 200959076 200959157 -81234507 - MIR SINE MIR -128 134 49 420 227 18 158 chr1 200959404 200959682 -81233982 - MER102b DNA MER1_type 0 341 103 220 288 171 9 chr1 200959935 200960046 -81233618 - L2 LINE L2 -1022 2292 2164 872 298 120 20 chr1 200960360 200960948 -81232716 + L1MB8 LINE L1 5257 5923 -255 921 78 0 0 chr1 200960985 200961101 -81232563 - AluY SINE Alu -21 290 175 632 143 137 8 chr1 200961349 200961536 -81232128 - MER33 DNA MER1_type -116 208 1 693 160 50 0 chr1 200961891 200962010 -81231654 - FLAM_C SINE Alu -7 126 2 953 193 153 11 chr1 200962020 200962294 -81231370 - LTR37A LTR ERV1 -25 401 89 2049 124 7 20 chr1 200962561 200962867 -81230797 + AluSx SINE Alu 1 302 -10 23 54 0 0 chr1 200963386 200963423 -81230241 + AT_rich Low_complexity Low_complexity 1 37 0 461 300 17 8 chr1 200963444 200963564 -81230100 + MIR3 SINE MIR 58 178 -30 35 24 0 0 chr1 200964925 200964967 -81228697 + AT_rich Low_complexity Low_complexity 1 42 0 2158 104 13 0 chr1 200966606 200966905 -81226759 + AluSq SINE Alu 1 303 -10 451 286 75 114 chr1 200968101 200968486 -81225178 - L2 LINE L2 -1 3271 2902 2131 119 0 3 chr1 200968548 200968842 -81224822 - AluSx SINE Alu -15 297 5 528 280 45 15 chr1 200969371 200969503 -81224161 + L2 LINE L2 3137 3272 0 665 134 101 17 chr1 200970300 200970419 -81223245 + FLAM_C SINE Alu 1 129 -4 2279 74 0 14 chr1 200970799 200971096 -81222568 + AluY SINE Alu 1 293 -18 25 51 0 0 chr1 200971429 200971468 -81222196 + AT_rich Low_complexity Low_complexity 1 39 0 204 311 0 16 chr1 200971570 200971631 -81222033 - L2 LINE L2 -307 3006 2947 218 236 0 55 chr1 200971836 200971891 -81221773 + MIR SINE MIR 21 72 -136 1360 246 171 61 chr1 200973468 200974192 -81219472 - L2 LINE L2 -812 2502 1699 1853 162 0 7 chr1 200974268 200974565 -81219099 + AluSx SINE Alu 3 297 -15 532 211 35 0 chr1 200975745 200975859 -81217805 - MER105 DNA DNA -18 186 69 230 210 32 65 chr1 200975898 200975960 -81217704 - MER105 DNA DNA -130 74 15 22 0 0 0 chr1 200977188 200977210 -81216454 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1 200977670 200977704 -81215960 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr1 200977888 200977927 -81215737 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr1 200980478 200980499 -81213165 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 200980714 200980737 -81212927 + AT_rich Low_complexity Low_complexity 1 23 0 1936 154 24 3 chr1 200981251 200981588 -81212076 - MER44D DNA MER2_type -6 599 384 967 221 5 25 chr1 200981606 200981805 -81211859 - MER44D DNA MER2_type -479 226 32 314 227 57 11 chr1 200982471 200982559 -81211105 - L2 LINE L2 -50 3263 3172 259 268 0 0 chr1 200982625 200982681 -81210983 - L2 LINE L2 -285 3028 2973 1349 272 199 22 chr1 200982767 200983527 -81210137 - L2 LINE L2 -804 2510 1617 5333 13 11 0 chr1 200983563 200984176 -81209488 - L1PA2 LINE L1 0 6155 5536 2302 8 0 0 chr1 200984176 200984444 -81209220 + L1PA2 LINE L1 5286 5553 -602 339 313 25 44 chr1 200984450 200984610 -81209054 - L2 LINE L2 -1723 1591 1435 216 278 42 14 chr1 200984658 200984730 -81208934 - L2 LINE L2 -2531 783 710 216 244 103 26 chr1 200985128 200985206 -81208458 + MIR3 SINE MIR 125 208 0 27 29 0 0 chr1 200986457 200986491 -81207173 + AT_rich Low_complexity Low_complexity 1 34 0 239 152 0 0 chr1 200986708 200986754 -81206910 + T-rich Low_complexity Low_complexity 2 47 0 855 264 90 59 chr1 200986755 200987179 -81206485 + L1MC4 LINE L1 7462 7898 -144 241 192 64 13 chr1 200987194 200987272 -81206392 + L1MC4 LINE L1 7961 8042 0 584 316 124 9 chr1 200987422 200987761 -81205903 + L1MC/D LINE L1 5389 5766 -2042 242 238 90 82 chr1 200988236 200988358 -81205306 - L1ME3A LINE L1 -15 6155 6033 498 113 25 0 chr1 200988718 200988798 -81204866 + AluSg/x SINE Alu 218 299 -13 216 135 0 0 chr1 200989348 200989385 -81204279 + (TATG)n Simple_repeat Simple_repeat 2 38 0 6156 159 11 4 chr1 200990451 200992190 -81201474 - L1PB1 LINE L1 -2 6149 4394 180 0 0 0 chr1 200992190 200992210 -81201454 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 6156 159 11 4 chr1 200992210 200992283 -81201381 - L1PB1 LINE L1 -1757 4394 4323 2108 118 0 7 chr1 200993186 200993483 -81200181 + AluSx SINE Alu 1 295 -17 423 296 94 57 chr1 200994105 200994436 -81199228 - L2 LINE L2 -105 3208 2866 23 0 0 0 chr1 200994462 200994485 -81199179 + AT_rich Low_complexity Low_complexity 1 23 0 15211 213 43 19 chr1 200995030 200996499 -81197165 - L1PA16 LINE L1 0 6817 5386 234 0 0 0 chr1 200996499 200996525 -81197139 + (TTG)n Simple_repeat Simple_repeat 2 27 0 15211 213 43 19 chr1 200996525 200996739 -81196925 - L1PA16 LINE L1 -1431 5386 5179 2348 82 0 3 chr1 200996739 200997044 -81196620 - AluSc SINE Alu -5 304 1 15211 213 43 19 chr1 200997044 201000095 -81193569 - L1PA16 LINE L1 -1638 5179 1935 2213 116 0 3 chr1 201000095 201000406 -81193258 + AluSx SINE Alu 1 310 -2 15211 213 43 19 chr1 201000406 201001015 -81192649 - L1PA16 LINE L1 -4882 1935 1343 1666 304 5 73 chr1 201001014 201001753 -81191911 - L1PA16 LINE L1 -6098 689 1 * 2265 90 3 7 chr1 201002329 201002630 -81191034 - AluSq SINE Alu -13 300 1 212 222 89 0 chr1 201003122 201003167 -81190497 - L2 LINE L2 0 3272 3224 1243 265 118 11 chr1 201009587 201010284 -81183380 - L1M4 LINE L1 -1276 4870 4100 1230 149 33 9 chr1 201010591 201010805 -81182859 + MER20 DNA MER1_type 1 219 0 6593 198 96 13 chr1 201011562 201013586 -81180078 + L1M3 LINE L1 3329 5520 -660 298 270 167 42 chr1 201013823 201014066 -81179598 + L1ME LINE L1 5315 5584 -582 815 296 45 4 chr1 201014089 201014332 -81179332 + MIR SINE MIR 5 257 -5 2215 87 35 0 chr1 201014618 201014904 -81178760 + AluSq SINE Alu 1 296 -17 2048 131 3 0 chr1 201014955 201015238 -81178426 - AluSx SINE Alu -20 292 9 726 180 62 0 chr1 201015245 201015373 -81178291 - FLAM_C SINE Alu -6 137 2 198 323 62 0 chr1 201015430 201015495 -81178169 + MER5A DNA MER1_type 55 123 -66 850 181 0 69 chr1 201016750 201016938 -81176726 + MER5B DNA MER1_type 1 175 -3 364 123 18 0 chr1 201016981 201017038 -81176626 - MER5A DNA MER1_type 0 189 132 4269 74 13 18 chr1 201017296 201017853 -81175811 + MER41A LTR ERV1 1 554 0 2204 107 31 0 chr1 201018121 201018412 -81175252 - AluSq SINE Alu -13 300 1 438 268 65 24 chr1 201018458 201018626 -81175038 + MLT1L LTR MaLR 349 523 -92 249 267 26 0 chr1 201018626 201018742 -81174922 + GA-rich Low_complexity Low_complexity 3 121 0 213 198 319 0 chr1 201019723 201019814 -81173850 - L2 LINE L2 -12 3260 3141 416 288 94 24 chr1 201020062 201020232 -81173432 - MIR SINE MIR -45 217 36 190 325 132 0 chr1 201020840 201020954 -81172710 - L2 LINE L2 -661 2653 2525 434 280 49 7 chr1 201021156 201021299 -81172365 + MIR SINE MIR 102 250 -12 367 279 79 21 chr1 201021768 201021908 -81171756 - MIR SINE MIR -39 223 76 911 219 6 0 chr1 201022049 201022213 -81171451 - FAM SINE Alu -10 165 1 1652 153 82 37 chr1 201023793 201024146 -81169518 - MLT1A2 LTR MaLR -5 369 1 2966 16 0 0 chr1 201024206 201024524 -81169140 - AluYb8 SINE Alu 0 318 1 186 43 0 0 chr1 201025177 201025200 -81168464 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 247 208 0 19 chr1 201025859 201025912 -81167752 + (CA)n Simple_repeat Simple_repeat 2 53 0 558 211 23 23 chr1 201027620 201027748 -81165916 - MER5B DNA MER1_type -3 175 48 2315 115 0 0 chr1 201027775 201028080 -81165584 - AluSq SINE Alu -8 305 1 337 262 119 40 chr1 201028103 201028229 -81165435 + L1ME4a LINE L1 5956 6091 -30 239 304 108 71 chr1 201028297 201028688 -81164976 + L2 LINE L2 2334 2758 -556 1691 156 36 17 chr1 201028688 201028989 -81164675 + AluSx SINE Alu 1 307 -5 239 304 108 71 chr1 201028989 201029216 -81164448 + L2 LINE L2 2758 2975 -339 356 360 45 66 chr1 201030510 201030592 -81163072 - L2 LINE L2 -10 3262 3180 2403 88 16 3 chr1 201030592 201030898 -81162766 + AluSq SINE Alu 1 310 -3 356 360 45 66 chr1 201030898 201031104 -81162560 - L2 LINE L2 -92 3180 2980 355 224 0 0 chr1 201031175 201031251 -81162413 + MER116 DNA Mariner 1 76 -4 2284 113 0 0 chr1 201031429 201031720 -81161944 + AluSx SINE Alu 1 291 -21 2526 115 20 6 chr1 201031761 201032118 -81161546 - THE1B LTR MaLR -2 362 1 593 322 39 39 chr1 201032186 201032419 -81161245 + MIR SINE MIR 30 262 0 207 0 0 0 chr1 201032747 201032770 -81160894 + (T)n Simple_repeat Simple_repeat 1 23 0 1801 168 0 52 chr1 201034260 201034587 -81159077 + AluJo SINE Alu 1 310 -2 394 231 56 111 chr1 201034601 201034817 -81158847 + MER63A DNA MER1_type 3 206 -4 4901 131 92 6 chr1 201035616 201036443 -81157221 + L1MC1 LINE L1 5436 6333 0 2170 113 27 0 chr1 201036451 201036743 -81156921 + AluSg SINE Alu 1 300 -10 1697 152 0 84 chr1 201036747 201036869 -81156795 + AluJo SINE Alu 1 132 -180 2082 149 3 16 chr1 201036869 201037184 -81156480 - AluSx SINE Alu -1 311 1 1697 152 0 84 chr1 201037184 201037384 -81156280 + AluJo SINE Alu 132 296 -16 2266 102 3 0 chr1 201038413 201038708 -81154956 + AluSx SINE Alu 1 296 -16 623 260 35 15 chr1 201038864 201039064 -81154600 - L1MC4a LINE L1 -927 6881 6678 324 304 167 47 chr1 201039454 201039570 -81154094 - L2 LINE L2 -587 2727 2626 2538 62 0 3 chr1 201039570 201039876 -81153788 + AluY SINE Alu 1 305 -6 324 304 167 47 chr1 201039876 201040161 -81153503 - L2 LINE L2 -688 2626 2278 257 306 30 22 chr1 201041102 201041236 -81152428 + L2 LINE L2 2905 3039 -233 1520 179 8 0 chr1 201041836 201042093 -81151571 - AluJb SINE Alu -53 259 1 1985 168 0 0 chr1 201043288 201043586 -81150078 + AluSx SINE Alu 1 298 -14 2233 104 7 3 chr1 201043594 201043893 -81149771 + AluSx SINE Alu 9 308 -4 532 291 132 9 chr1 201043934 201044163 -81149501 + MIR SINE MIR 5 256 -6 2504 79 7 0 chr1 201044294 201044599 -81149065 + AluSq SINE Alu 3 309 -4 326 303 41 41 chr1 201044956 201045100 -81148564 + MIR3 SINE MIR 18 161 -47 354 194 56 144 chr1 201045100 201045193 -81148471 + MER5B DNA MER1_type 2 77 -101 791 152 0 36 chr1 201045193 201045331 -81148333 - FLAM_A SINE Alu 0 133 1 354 194 56 144 chr1 201045331 201045397 -81148267 + MER5B DNA MER1_type 77 147 -31 824 179 26 19 chr1 201045400 201045556 -81148108 - MER5B DNA MER1_type -6 172 16 211 307 109 0 chr1 201045978 201046079 -81147585 - L2 LINE L2 0 3272 3161 2096 148 30 30 chr1 201046698 201047062 -81146602 + THE1B LTR MaLR 1 364 0 444 312 72 0 chr1 201047532 201047670 -81145994 - MIR SINE MIR -83 179 32 651 213 0 63 chr1 201048765 201048939 -81144725 + MIR SINE MIR 100 262 0 320 230 0 40 chr1 201048945 201049019 -81144645 + L1MC4 LINE L1 6640 6710 -1332 945 279 36 47 chr1 201049102 201049182 -81144482 - MLT1I LTR MaLR 0 409 330 2096 130 0 13 chr1 201049182 201049483 -81144181 - AluSq SINE Alu -16 297 1 945 279 36 47 chr1 201049483 201049786 -81143878 - MLT1I LTR MaLR -79 330 30 892 227 289 6 chr1 201049817 201049935 -81143729 - L2 LINE L2 -43 3270 3187 1884 145 3 18 chr1 201049935 201050256 -81143408 - AluSx SINE Alu 0 321 5 892 227 289 6 chr1 201050256 201050630 -81143034 - L2 LINE L2 -126 3187 2625 2632 59 0 0 chr1 201050907 201051210 -81142454 - AluY SINE Alu -8 303 1 276 326 200 23 chr1 201051540 201051715 -81141949 - MIR SINE MIR -43 219 14 1264 242 99 48 chr1 201051778 201052232 -81141432 + MLT1H1 LTR MaLR 66 542 -13 230 186 23 0 chr1 201052284 201052327 -81141337 + CT-rich Low_complexity Low_complexity 1 44 0 519 336 88 34 chr1 201052327 201052565 -81141099 - L2 LINE L2 -1 3271 3021 502 346 26 87 chr1 201052588 201053257 -81140407 - L3 LINE CR1 -831 746 63 204 179 0 0 chr1 201053532 201053571 -81140093 + A-rich Low_complexity Low_complexity 1 39 0 794 199 33 0 chr1 201053793 201053944 -81139720 + MIR SINE MIR 79 234 -28 2066 143 37 0 chr1 201054123 201054423 -81139241 + AluSx SINE Alu 1 311 -1 1591 175 39 112 chr1 201054661 201054862 -81138802 + MLT1D LTR MaLR 16 230 -275 2158 127 3 3 chr1 201054862 201055162 -81138502 + AluSx SINE Alu 1 300 -12 1591 175 39 112 chr1 201055162 201055479 -81138185 + MLT1D LTR MaLR 230 496 -9 1916 155 3 3 chr1 201056107 201056397 -81137267 + AluJb SINE Alu 12 301 -11 241 265 24 0 chr1 201056955 201057038 -81136626 + MLT1E LTR MaLR 3 87 -506 651 221 74 25 chr1 201057986 201058149 -81135515 + MER5B DNA MER1_type 5 175 -3 2269 114 3 7 chr1 201058163 201058462 -81135202 - AluSx SINE Alu -14 298 1 4100 169 29 27 chr1 201058506 201059058 -81134606 - L1MB5 LINE L1 0 6174 5619 1794 143 11 14 chr1 201059058 201059344 -81134320 - AluJb SINE Alu -17 295 11 4100 169 29 27 chr1 201059344 201059630 -81134034 - L1MB5 LINE L1 -555 5619 5335 257 222 83 14 chr1 201059652 201059724 -81133940 - MIR SINE MIR -76 186 110 2328 116 0 3 chr1 201059856 201060159 -81133505 + AluSq SINE Alu 1 302 -11 405 0 0 0 chr1 201060663 201060708 -81132956 + (TG)n Simple_repeat Simple_repeat 2 46 0 2068 142 35 44 chr1 201061723 201062090 -81131574 - THE1B LTR MaLR 0 364 1 5085 231 118 49 chr1 201062091 201062635 -81131029 + L1M1 LINE L1 17 522 -7043 6046 72 41 20 chr1 201062635 201063442 -81130222 + LTR12 LTR ERV1 3 826 0 5085 231 118 49 chr1 201063442 201064283 -81129381 + L1M1 LINE L1 522 1303 -6262 477 0 0 0 chr1 201064283 201064336 -81129328 + (CA)n Simple_repeat Simple_repeat 2 54 0 5085 231 118 49 chr1 201064336 201064857 -81128807 + L1M1 LINE L1 1303 1786 -5779 2060 131 7 7 chr1 201064857 201065155 -81128509 + AluSx SINE Alu 1 298 -14 5085 231 118 49 chr1 201065155 201065472 -81128192 + L1M1 LINE L1 1786 3077 -4488 931 121 0 0 chr1 201065473 201065597 -81128067 + AluSq/x SINE Alu 1 124 -188 961 193 11 0 chr1 201065745 201065932 -81127732 + L1PB4 LINE L1 5967 6155 -1 1568 258 110 31 chr1 201065959 201066356 -81127308 - HAL1 LINE L1 -461 2046 1682 821 147 0 0 chr1 201066356 201066526 -81127138 + FLAM_C SINE Alu 1 170 0 1568 258 110 31 chr1 201066526 201066899 -81126765 - HAL1 LINE L1 -825 1682 1214 43084 35 22 3 chr1 201066954 201072939 -81120725 - L1PA3 LINE L1 0 6155 52 528 188 79 112 chr1 201072943 201073220 -81120444 - HAL1 LINE L1 -1375 1132 865 1925 164 10 0 chr1 201073289 201073582 -81120082 + AluJo SINE Alu 1 296 -16 1038 70 70 0 chr1 201073828 201073971 -81119693 - Tigger1 DNA MER2_type -1043 1375 1223 2288 119 0 6 chr1 201073980 201074292 -81119372 - AluSq SINE Alu -3 310 1 746 299 62 35 chr1 201074628 201074996 -81118668 - HAL1 LINE L1 -1712 795 418 2043 156 0 0 chr1 201075175 201075470 -81118194 - AluJo SINE Alu -17 295 1 7964 114 45 56 chr1 201075472 201075913 -81117751 - Tigger1 DNA MER2_type -831 1587 1143 2474 93 0 3 chr1 201075913 201076225 -81117439 - AluY SINE Alu 0 311 1 7964 114 45 56 chr1 201076225 201077146 -81116518 - Tigger1 DNA MER2_type -1275 1143 240 790 194 15 0 chr1 201077148 201077282 -81116382 + FLAM_A SINE Alu 1 136 -6 1160 154 123 0 chr1 201077289 201077516 -81116148 - Tigger1 DNA MER2_type -2163 255 1 439 206 11 11 chr1 201077516 201077607 -81116057 + MER99 DNA DNA 265 355 -473 13289 160 28 30 chr1 201077745 201078428 -81115236 + L1MA4 LINE L1 2652 3335 -2811 1982 156 0 7 chr1 201078428 201078730 -81114934 + AluSx SINE Alu 1 300 -12 13289 160 28 30 chr1 201078730 201078964 -81114700 + L1MA4 LINE L1 3335 3568 -2578 1658 190 21 0 chr1 201078964 201079248 -81114416 - AluJo SINE Alu -22 290 1 13289 160 28 30 chr1 201079248 201081069 -81112595 + L1MA4 LINE L1 3568 5385 -761 5253 143 22 32 chr1 201081113 201081136 -81112528 + L1MA4 LINE L1 5381 5403 -897 1990 129 29 0 chr1 201081136 201081415 -81112249 + AluSx SINE Alu 1 287 -25 5253 143 22 32 chr1 201081415 201081489 -81112175 + L1MA4 LINE L1 5403 5476 -824 2634 118 26 26 chr1 201081489 201081912 -81111752 + MSTB LTR MaLR 3 425 -1 5253 143 22 32 chr1 201081912 201082728 -81110936 + L1MA4 LINE L1 5476 6286 -14 2555 65 0 3 chr1 201082728 201083035 -81110629 - AluY SINE Alu -5 306 1 1637 221 52 25 chr1 201083223 201083661 -81110003 + MER99 DNA DNA 378 827 -1 2137 219 108 89 chr1 201084249 201084404 -81109260 + MER69 DNA AcHobo 1 152 -1074 685 209 0 8 chr1 201084404 201084538 -81109126 + FLAM_A SINE Alu 1 133 0 2137 219 108 89 chr1 201084538 201084552 -81109112 + MER69 DNA AcHobo 152 164 -1062 2319 89 3 13 chr1 201084552 201084856 -81108808 + AluSx SINE Alu 1 301 -11 2137 219 108 89 chr1 201084856 201085313 -81108351 + MER69 DNA AcHobo 164 611 -615 2360 98 0 0 chr1 201085313 201085610 -81108054 - AluSc SINE Alu -12 297 1 2418 102 0 3 chr1 201085619 201085933 -81107731 - AluSp SINE Alu 0 313 1 2137 219 108 89 chr1 201085933 201086065 -81107599 + MER69 DNA AcHobo 618 785 -441 1735 175 65 3 chr1 201086050 201086421 -81107243 + MER69 DNA AcHobo 2133 2526 0 * 1704 156 21 70 chr1 201086811 201086956 -81106708 + AluJb SINE Alu 1 152 -160 2149 115 0 0 chr1 201086956 201087244 -81106420 + AluSx SINE Alu 1 288 -24 1704 156 21 70 chr1 201087244 201087426 -81106238 + AluJb SINE Alu 152 312 0 253 250 0 76 chr1 201088576 201088668 -81104996 - MIR SINE MIR -126 136 52 259 148 111 0 chr1 201088947 201089001 -81104663 - AluS SINE Alu -223 80 21 261 298 190 0 chr1 201089053 201089174 -81104490 - MER5A DNA MER1_type -30 159 16 520 203 67 98 chr1 201089385 201089406 -81104258 + L1MC5 LINE L1 7705 7725 -270 2003 140 0 0 chr1 201089406 201089691 -81103973 + AluSx SINE Alu 26 310 -2 520 203 67 98 chr1 201089691 201089710 -81103954 + L1MC5 LINE L1 7725 7743 -252 1942 149 30 0 chr1 201089710 201090006 -81103658 + AluJb SINE Alu 1 305 -7 520 203 67 98 chr1 201090006 201090209 -81103455 + L1MC5 LINE L1 7743 7995 0 703 224 0 0 chr1 201090210 201090335 -81103329 - FLAM_C SINE Alu -17 126 2 397 256 8 16 chr1 201090447 201090568 -81103096 + L2 LINE L2 3194 3313 0 204 302 0 23 chr1 201091331 201091417 -81102247 - L2 LINE L2 -863 2451 2368 2241 130 0 0 chr1 201091560 201091867 -81101797 + AluSx SINE Alu 1 307 -5 2143 116 0 29 chr1 201092009 201092319 -81101345 + AluSx SINE Alu 1 301 -11 319 277 0 11 chr1 201092388 201092482 -81101182 + L2 LINE L2 3180 3272 0 647 244 0 0 chr1 201093223 201093350 -81100314 - L2 LINE L2 -2 3311 3185 491 0 17 0 chr1 201093352 201093411 -81100253 + (TA)n Simple_repeat Simple_repeat 2 61 0 2058 117 72 0 chr1 201093417 201093708 -81099956 - AluSx SINE Alu 0 312 1 365 275 46 0 chr1 201093914 201094045 -81099619 - MIR SINE MIR -69 193 57 277 59 0 0 chr1 201094047 201094081 -81099583 + AluSc SINE Alu 94 127 -172 217 189 0 0 chr1 201094527 201094564 -81099100 - L2 LINE L2 -23 3249 3213 2329 233 39 50 chr1 201094930 201095278 -81098386 + L1ME3A LINE L1 5455 5792 -378 2183 108 7 10 chr1 201095278 201095573 -81098091 + AluSx SINE Alu 1 294 -18 2329 233 39 50 chr1 201095573 201095925 -81097739 + L1ME3A LINE L1 5792 6147 -23 1423 113 5 5 chr1 201096352 201096546 -81097118 + AluJb SINE Alu 1 194 -118 1070 248 85 79 chr1 201096558 201096609 -81097055 + L1MA6 LINE L1 5290 5339 -961 2135 99 50 0 chr1 201096609 201096891 -81096773 + AluSg SINE Alu 1 296 -14 1070 248 85 79 chr1 201096891 201097473 -81096191 + L1MA6 LINE L1 5339 5927 -373 * 2942 201 86 28 chr1 201096903 201097684 -81095980 + L1ME3 LINE L1 5335 6160 -2 260 113 14 42 chr1 201097694 201097765 -81095899 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 2302 213 64 24 chr1 201097788 201098046 -81095618 + L1ME1 LINE L1 5544 5790 -376 2430 88 7 0 chr1 201098046 201098351 -81095313 + AluY SINE Alu 1 307 -4 2302 213 64 24 chr1 201098351 201098673 -81094991 + L1ME1 LINE L1 5790 6147 -19 2071 143 0 6 chr1 201098696 201099010 -81094654 + AluSx SINE Alu 1 312 0 183 162 0 0 chr1 201099026 201099063 -81094601 + A-rich Low_complexity Low_complexity 1 37 0 2316 114 0 0 chr1 201100013 201100312 -81093352 + AluSx SINE Alu 1 299 -13 322 247 34 34 chr1 201100317 201100463 -81093201 + L2 LINE L2 2909 3054 -218 180 208 62 0 chr1 201100495 201100543 -81093121 - L2 LINE L2 0 3313 3263 1314 132 0 0 chr1 201100750 201100932 -81092732 - AluSg/x SINE Alu -2 310 129 1942 109 4 0 chr1 201100934 201101190 -81092474 - AluSx SINE Alu -55 257 1 463 151 105 0 chr1 201101250 201101336 -81092328 + MER53 DNA DNA 95 189 0 209 250 78 0 chr1 201101375 201101439 -81092225 + L2 LINE L2 3243 3311 -2 2200 120 0 0 chr1 201103275 201103566 -81090098 - AluSx SINE Alu -21 291 1 2497 181 74 20 chr1 201103698 201104185 -81089479 - MLT2B1 LTR ERVL 0 520 8 188 340 95 0 chr1 201104185 201104385 -81089279 - L2 LINE L2 -692 2622 2404 752 122 0 8 chr1 201104409 201104532 -81089132 - AluSp/q SINE Alu 0 313 192 838 203 0 0 chr1 201104633 201104786 -81088878 - AluSp SINE Alu -160 153 1 378 0 0 0 chr1 201105179 201105221 -81088443 + (CA)n Simple_repeat Simple_repeat 2 43 0 395 187 53 0 chr1 201105565 201105640 -81088024 + MER116 DNA Mariner 1 79 -1 444 266 22 14 chr1 201105672 201105811 -81087853 + MER5B DNA MER1_type 1 140 -38 2150 128 0 0 chr1 201105813 201106109 -81087555 + AluSx SINE Alu 1 296 -16 724 149 71 0 chr1 201106781 201106922 -81086742 + L1MB7 LINE L1 6034 6184 0 226 289 144 10 chr1 201108524 201108628 -81085036 + L2 LINE L2 3155 3272 0 320 309 152 26 chr1 201109042 201109311 -81084353 + L3b LINE CR1 1191 1493 -90 427 254 66 0 chr1 201109829 201109951 -81083713 - MIR SINE MIR -60 202 73 2409 78 7 0 chr1 201112623 201112918 -81080746 + AluSc SINE Alu 1 297 -12 247 179 45 60 chr1 201113081 201113148 -81080516 + L2 LINE L2 3248 3313 0 226 362 57 21 chr1 201115061 201115202 -81078462 - L2 LINE L2 -5 3267 3122 219 36 0 0 chr1 201115208 201115236 -81078428 + (TG)n Simple_repeat Simple_repeat 1 28 0 730 131 0 0 chr1 201116625 201116732 -81076932 - AluJb SINE Alu -1 311 205 525 242 42 53 chr1 201116739 201116929 -81076735 - MIR SINE MIR -70 192 5 881 238 104 56 chr1 201117947 201118000 -81075664 - MLT1H LTR MaLR -25 530 481 2238 98 16 3 chr1 201118000 201118306 -81075358 - AluSx SINE Alu -2 310 1 881 238 104 56 chr1 201118306 201118694 -81074970 - MLT1H LTR MaLR -74 481 113 195 42 0 0 chr1 201118694 201118718 -81074946 + (TC)n Simple_repeat Simple_repeat 2 25 0 773 168 0 46 chr1 201118718 201118849 -81074815 - FLAM_C SINE Alu -8 125 1 881 238 104 56 chr1 201118849 201118878 -81074786 - MLT1H LTR MaLR -441 114 53 183 42 0 0 chr1 201120118 201120142 -81073522 + (TG)n Simple_repeat Simple_repeat 2 25 0 2261 107 0 0 chr1 201120162 201120460 -81073204 + AluSx SINE Alu 1 298 -14 2306 101 0 7 chr1 201121794 201122101 -81071563 - AluSx SINE Alu -7 305 1 2327 98 3 7 chr1 201122442 201122748 -81070916 + AluSp SINE Alu 1 305 -8 6443 77 39 35 chr1 201124046 201126001 -81067663 - SVA Other Other -518 1386 1 241 133 0 56 chr1 201126001 201126091 -81067573 + (GGGAGA)n Simple_repeat Simple_repeat 2 86 0 4373 184 127 19 chr1 201126369 201127867 -81065797 - MER52A LTR ERV1 0 1755 1 264 206 132 0 chr1 201128620 201128688 -81064976 + MIR3 SINE MIR 109 185 -23 3956 137 10 11 chr1 201128688 201129314 -81064350 - L1MC1 LINE L1 -255 6078 5454 28 0 0 0 chr1 201129456 201129484 -81064180 + AT_rich Low_complexity Low_complexity 1 28 0 1688 147 70 30 chr1 201129937 201130236 -81063428 + AluJo SINE Alu 1 311 -1 295 245 85 80 chr1 201130262 201130462 -81063202 - MIR SINE MIR -13 249 49 2300 100 0 13 chr1 201130683 201130992 -81062672 + AluSp SINE Alu 1 305 -8 2336 60 32 3 chr1 201131035 201131319 -81062345 + AluSq SINE Alu 1 292 -21 372 176 15 0 chr1 201132541 201132609 -81061055 - MIR3 SINE MIR -27 181 113 455 243 7 50 chr1 201133512 201133652 -81060012 - MIR3 SINE MIR -7 201 68 2183 115 0 3 chr1 201133860 201134156 -81059508 - AluSx SINE Alu -17 295 1 231 313 16 0 chr1 201134213 201134277 -81059387 - L2 LINE L2 -9 3263 3199 2284 104 3 3 chr1 201135154 201135462 -81058202 + AluSx SINE Alu 1 308 -4 24 24 0 24 chr1 201135630 201135657 -81058007 + AT_rich Low_complexity Low_complexity 1 28 -13 2061 143 0 7 chr1 201135657 201135957 -81057707 + AluJb SINE Alu 1 298 -14 24 24 0 24 chr1 201135957 201135971 -81057693 + AT_rich Low_complexity Low_complexity 28 41 0 400 184 2 30 chr1 201135973 201136067 -81057597 - AluSg SINE Alu -14 288 217 1465 134 22 4 chr1 201136684 201136915 -81056749 - AluSg SINE Alu -75 235 1 328 258 81 124 chr1 201137302 201137697 -81055967 + L1ME4a LINE L1 5434 5811 -310 232 236 47 38 chr1 201138024 201138130 -81055534 - L1M4 LINE L1 -988 5158 5052 780 156 47 0 chr1 201138274 201138402 -81055262 + FRAM SINE Alu 18 151 -25 252 0 0 0 chr1 201138411 201138439 -81055225 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 742 232 54 54 chr1 201138640 201138916 -81054748 + L1ME4a LINE L1 5806 6081 -40 323 185 61 24 chr1 201139165 201139314 -81054350 - L1MC5 LINE L1 0 8042 7856 203 272 41 68 chr1 201140705 201140852 -81052812 - L2 LINE L2 -213 3059 2917 6543 134 25 14 chr1 201140936 201142031 -81051633 - L1MC1 LINE L1 -8 6325 5222 2233 115 0 3 chr1 201142031 201142327 -81051337 + AluSx SINE Alu 1 295 -17 6543 134 25 14 chr1 201142327 201142367 -81051297 - L1MC1 LINE L1 -1111 5222 5184 305 352 34 23 chr1 201142455 201142631 -81051033 - MIR SINE MIR -56 206 29 246 333 114 8 chr1 201142649 201142781 -81050883 - L2 LINE L2 -1 3271 3126 1856 181 46 24 chr1 201142938 201143396 -81050268 - Charlie4a DNA MER1_type -9 499 32 470 325 51 17 chr1 201144260 201144494 -81049170 - MIR SINE MIR 0 262 21 2302 114 0 0 chr1 201144658 201144956 -81048708 + AluSx SINE Alu 1 298 -14 1325 255 78 22 chr1 201145036 201145329 -81048335 - L1MC4a LINE L1 -1818 5990 5656 2107 132 15 32 chr1 201145329 201145670 -81047994 + MER1B DNA MER1_type 1 335 -2 1325 255 78 22 chr1 201145670 201145874 -81047790 - L1MC4a LINE L1 -2152 5656 5465 308 113 99 14 chr1 201145883 201145954 -81047710 - L1MC4a LINE L1 -2414 5394 5318 1687 144 4 0 chr1 201146045 201146288 -81047376 - AluSx SINE Alu -10 302 59 1884 156 3 19 chr1 201146370 201146678 -81046986 - AluJb SINE Alu -9 303 1 1080 246 77 0 chr1 201146680 201146965 -81046699 - L1MC4 LINE L1 -867 7175 6869 1042 158 0 0 chr1 201146984 201147136 -81046528 - AluSg/x SINE Alu -20 290 139 1279 250 25 28 chr1 201147137 201147339 -81046325 - L1MC4 LINE L1 -1226 6816 6614 2333 100 3 3 chr1 201147339 201147649 -81046015 + AluSg SINE Alu 1 310 0 1279 250 25 28 chr1 201147649 201147802 -81045862 - L1MC4 LINE L1 -1428 6614 6462 2323 95 3 3 chr1 201147964 201148260 -81045404 + AluSx SINE Alu 1 296 -16 1831 183 0 6 chr1 201148273 201148584 -81045080 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr1 201149851 201149872 -81043792 + AT_rich Low_complexity Low_complexity 1 21 0 1914 97 54 14 chr1 201150117 201150396 -81043268 - AluSq SINE Alu -12 301 12 1861 172 52 14 chr1 201150730 201151079 -81042585 - MLT1A1 LTR MaLR -3 362 1 2189 123 3 0 chr1 201152292 201152592 -81041072 + AluSx SINE Alu 1 301 -11 2046 140 7 3 chr1 201152724 201153032 -81040632 - AluSx SINE Alu -3 309 1 2224 113 0 0 chr1 201153410 201153703 -81039961 - AluSg SINE Alu -17 293 1 352 227 104 110 chr1 201154224 201154330 -81039334 - LTR41 LTR ERVL -605 168 62 2407 90 0 3 chr1 201154330 201154641 -81039023 - AluSx SINE Alu -2 310 1 352 227 104 110 chr1 201154641 201154697 -81038967 - LTR41 LTR ERVL -711 62 7 1349 185 123 62 chr1 201154955 201155005 -81038659 - MSTD LTR MaLR 0 396 351 2162 106 0 3 chr1 201155005 201155316 -81038348 - AluSx SINE Alu 0 310 1 1349 185 123 62 chr1 201155316 201155486 -81038178 - MSTD LTR MaLR -45 351 193 2371 86 23 0 chr1 201155486 201155789 -81037875 - AluSq SINE Alu -3 310 1 1349 185 123 62 chr1 201155789 201155939 -81037725 - MSTD LTR MaLR -203 193 1 439 53 0 0 chr1 201155984 201156041 -81037623 + Alu SINE Alu 2 58 -251 1835 43 0 5 chr1 201156141 201156352 -81037312 + AluY SINE Alu 82 291 -20 814 242 147 16 chr1 201156466 201156772 -81036892 - L1ME4a LINE L1 -119 6002 5657 2313 107 0 22 chr1 201158352 201158669 -81034995 - AluSx SINE Alu -2 310 1 2140 105 10 14 chr1 201159955 201160251 -81033413 + AluSx SINE Alu 1 295 -17 185 219 219 9 chr1 201161159 201161264 -81032400 - L2 LINE L2 -3 3269 3143 2054 93 48 7 chr1 201162072 201162363 -81031301 + AluSp SINE Alu 1 303 -10 1236 86 19 0 chr1 201162363 201162525 -81031139 + AluSq SINE Alu 135 299 -14 2124 107 3 17 chr1 201163468 201163768 -81029896 - AluSx SINE Alu -16 296 1 1696 137 17 33 chr1 201163907 201164207 -81029457 - AluJo SINE Alu -13 299 5 394 206 69 0 chr1 201164234 201164336 -81029328 - MER5A DNA MER1_type -80 109 1 396 176 0 40 chr1 201164603 201164677 -81028987 + AluS SINE Alu 14 84 -218 2111 76 0 47 chr1 201164838 201165132 -81028532 + AluSx SINE Alu 1 282 -30 280 0 0 0 chr1 201165132 201165163 -81028501 + (TAAA)n Simple_repeat Simple_repeat 1 80 0 551 236 47 0 chr1 201165505 201165632 -81028032 - MIR SINE MIR -62 200 68 2431 106 0 0 chr1 201165695 201166007 -81027657 - AluSx SINE Alu 0 312 1 199 276 69 0 chr1 201166390 201166448 -81027216 + MIR SINE MIR 70 131 -77 189 220 85 51 chr1 201168110 201168169 -81025495 + MIR SINE MIR 30 90 -118 2157 96 0 57 chr1 201168686 201169000 -81024664 - AluSg SINE Alu -9 301 6 2044 117 37 0 chr1 201169521 201169820 -81023844 - AluSg SINE Alu 0 310 1 290 287 174 0 chr1 201169820 201169935 -81023729 + MIR SINE MIR 122 256 -6 193 233 0 50 chr1 201170176 201170236 -81023428 + L2 LINE L2 3214 3270 -2 2443 74 7 0 chr1 201170441 201170740 -81022924 + AluSg SINE Alu 1 301 -9 2626 59 0 0 chr1 201171681 201171985 -81021679 + AluY SINE Alu 1 304 -7 326 228 117 49 chr1 201172982 201173144 -81020520 - MER5A DNA MER1_type -3 186 3 1973 127 0 0 chr1 201173522 201173789 -81019875 + AluJb SINE Alu 1 267 -45 1540 81 0 0 chr1 201174449 201174634 -81019030 + AluSq SINE Alu 115 299 -14 241 239 119 30 chr1 201176307 201176374 -81017290 - MIR3 SINE MIR -30 178 106 200 273 130 13 chr1 201176853 201176930 -81016734 - L2 LINE L2 -18 3295 3210 1681 179 7 42 chr1 201177739 201177884 -81015780 + AluJb SINE Alu 1 131 -181 2068 90 45 0 chr1 201177884 201178152 -81015512 + AluSq SINE Alu 18 297 -16 1681 179 7 42 chr1 201178152 201178313 -81015351 + AluJb SINE Alu 131 296 -16 219 309 163 38 chr1 201178548 201178836 -81014828 + L2 LINE L2 2243 2566 -748 1883 156 3 0 chr1 201179893 201180181 -81013483 + AluJb SINE Alu 1 289 -23 250 85 0 85 chr1 201180708 201180755 -81012909 - tRNA-Gln-CAA tRNA tRNA 0 75 33 863 142 0 0 chr1 201181722 201181842 -81011822 - FLAM_C SINE Alu -23 120 1 1585 149 21 0 chr1 201181902 201182143 -81011521 + AluSx SINE Alu 60 305 -7 530 279 158 0 chr1 201182591 201182774 -81010890 + MIR SINE MIR 2 213 -49 1913 184 100 32 chr1 201182774 201183401 -81010263 + LTR8A LTR ERV1 1 668 -23 2039 115 0 0 chr1 201183405 201183675 -81009989 + AluSx SINE Alu 28 297 -15 526 264 123 34 chr1 201183928 201184197 -81009467 + MARNA DNA Mariner 100 392 -194 2529 58 0 0 chr1 201184198 201184493 -81009171 + AluY SINE Alu 1 295 -16 2186 106 31 0 chr1 201186674 201186967 -81006697 - AluSx SINE Alu -10 302 1 2684 45 7 0 chr1 201187298 201187607 -81006057 - AluY SINE Alu 0 311 1 412 267 34 56 chr1 201189068 201189229 -81004435 + MIR3 SINE MIR 9 168 -40 838 152 25 19 chr1 201189421 201189579 -81004085 - MIR SINE MIR -10 252 94 2550 72 0 0 chr1 201194943 201195248 -80998416 + AluY SINE Alu 1 305 -6 1581 243 96 19 chr1 201195864 201196269 -80997395 - L1ME3A LINE L1 -243 5927 5555 2229 126 0 3 chr1 201196269 201196578 -80997086 - AluSg SINE Alu -2 308 1 2253 120 0 0 chr1 201196578 201196879 -80996785 - AluSx SINE Alu -8 304 4 1581 243 96 19 chr1 201196879 201197006 -80996658 - L1ME3A LINE L1 -614 5556 5353 2050 146 0 3 chr1 201197058 201197353 -80996311 + AluSx SINE Alu 1 294 -18 256 239 128 9 chr1 201197376 201197485 -80996179 - L1ME LINE L1 -318 5803 5682 1670 171 0 89 chr1 201197886 201198052 -80995612 - AluJb SINE Alu -14 298 174 2318 91 3 0 chr1 201198052 201198349 -80995315 - AluSx SINE Alu -14 298 1 1670 171 0 89 chr1 201198349 201198509 -80995155 - AluJb SINE Alu -138 174 1 1671 162 12 61 chr1 201198813 201198942 -80994722 + AluSx SINE Alu 1 135 -177 2389 53 0 20 chr1 201198942 201199265 -80994399 + AluY SINE Alu 1 311 0 2186 104 24 0 chr1 201199268 201199556 -80994108 + AluSx SINE Alu 1 295 -17 1671 162 12 61 chr1 201199556 201199749 -80993915 + AluSx SINE Alu 137 311 -1 1392 206 0 0 chr1 201200655 201200922 -80992742 + Tigger7 DNA MER2_type 1 267 -466 404 220 10 30 chr1 201200920 201201020 -80992644 + Tigger7 DNA MER2_type 2390 2487 0 * 2195 130 0 3 chr1 201201385 201201686 -80991978 + AluSx SINE Alu 1 300 -12 330 212 7 171 chr1 201201750 201201794 -80991870 + L2 LINE L2 3191 3241 -72 2401 110 3 0 chr1 201201794 201202103 -80991561 - AluSp SINE Alu -3 310 1 330 212 7 171 chr1 201202103 201202123 -80991541 + L2 LINE L2 3241 3263 -50 2070 125 16 23 chr1 201202123 201202428 -80991236 - AluSx SINE Alu -9 303 1 330 212 7 171 chr1 201202428 201202508 -80991156 + L2 LINE L2 3263 3312 -1 23 0 0 0 chr1 201202572 201202595 -80991069 + AT_rich Low_complexity Low_complexity 1 23 0 1248 183 27 105 chr1 201203130 201203464 -80990200 + AluYb8 SINE Alu 1 308 -10 814 161 0 0 chr1 201203524 201203642 -80990022 + FLAM_C SINE Alu 1 118 -15 1637 154 114 0 chr1 201204553 201204825 -80988839 + AluSx SINE Alu 1 303 -9 577 160 104 40 chr1 201205282 201205407 -80988257 + FLAM_C SINE Alu 1 133 0 28 0 0 47 chr1 201205707 201205730 -80987934 + AT_rich Low_complexity Low_complexity 1 23 -18 1892 135 39 0 chr1 201205730 201206012 -80987652 - AluSx SINE Alu -19 293 1 28 0 0 47 chr1 201206012 201206031 -80987633 + AT_rich Low_complexity Low_complexity 23 41 0 2415 57 40 3 chr1 201207209 201207507 -80986157 - AluY SINE Alu -2 309 1 207 0 0 0 chr1 201207570 201207593 -80986071 + (A)n Simple_repeat Simple_repeat 1 23 0 594 182 36 0 chr1 201207601 201207711 -80985953 - FLAM_C SINE Alu -28 115 2 25 83 0 0 chr1 201207879 201207939 -80985725 + AT_rich Low_complexity Low_complexity 1 60 0 2338 108 0 19 chr1 201207939 201208253 -80985411 - AluSx SINE Alu -4 308 1 1957 127 0 20 chr1 201208517 201208817 -80984847 + AluSx SINE Alu 1 294 -18 1882 173 0 13 chr1 201208931 201209232 -80984432 - AluJb SINE Alu -15 297 1 2516 70 0 0 chr1 201209261 201209563 -80984101 + AluY SINE Alu 1 302 -9 855 230 30 13 chr1 201209606 201209765 -80983899 - L1ME3A LINE L1 -64 6106 5940 2150 107 23 7 chr1 201209765 201210064 -80983600 - AluSx SINE Alu -8 304 1 855 230 30 13 chr1 201210064 201210139 -80983525 - L1ME3A LINE L1 -230 5940 5868 653 196 90 3 chr1 201210144 201210328 -80983336 - L1MB7 LINE L1 -15 6165 5967 747 166 124 26 chr1 201210375 201210568 -80983096 - MER58A DNA MER1_type -1 223 12 960 225 31 0 chr1 201210575 201210797 -80982867 - L1ME3A LINE L1 -323 5847 5619 298 276 172 0 chr1 201210888 201211004 -80982660 - MIR SINE MIR -10 252 117 22 56 0 0 chr1 201211460 201211496 -80982168 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr1 201212477 201212500 -80981164 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2240 98 14 10 chr1 201213050 201213347 -80980317 + AluSx SINE Alu 1 298 -14 1692 189 7 3 chr1 201213991 201214287 -80979377 - AluJb SINE Alu -15 297 1 24 67 0 0 chr1 201214352 201214397 -80979267 + AT_rich Low_complexity Low_complexity 1 45 0 2340 90 3 3 chr1 201214704 201215003 -80978661 + AluSg SINE Alu 1 299 -11 234 107 14 150 chr1 201215488 201215628 -80978036 - AluSq/x SINE Alu -182 121 1 197 310 30 70 chr1 201215678 201215778 -80977886 + MER5C DNA MER1_type 1 96 -228 351 0 0 0 chr1 201216114 201216153 -80977511 + (TG)n Simple_repeat Simple_repeat 2 40 0 2375 107 0 10 chr1 201216324 201216632 -80977032 - AluSx SINE Alu -7 305 1 2344 73 0 14 chr1 201217900 201218230 -80975434 - AluSq SINE Alu 0 326 1 2138 118 0 0 chr1 201218265 201218545 -80975119 - AluSg SINE Alu -30 280 1 577 313 96 41 chr1 201218620 201219058 -80974606 + L2 LINE L2 2534 3029 -243 1653 133 98 29 chr1 201219058 201219374 -80974290 - MER44D DNA MER2_type -1 608 1 995 119 7 14 chr1 201219653 201219796 -80973868 + AluSx SINE Alu 1 142 -171 5626 80 21 54 chr1 201220093 201220977 -80972687 + SVA Other Other 12 866 -520 6478 136 17 48 chr1 201221024 201224065 -80969599 + SVA Other Other 433 1386 0 1103 136 6 18 chr1 201224065 201224234 -80969430 + AluSx SINE Alu 134 300 -12 24 0 0 0 chr1 201224723 201224747 -80968917 + AT_rich Low_complexity Low_complexity 1 24 0 802 138 0 0 chr1 201225584 201225700 -80967964 - FLAM_C SINE Alu -27 116 1 187 321 19 0 chr1 201225750 201225803 -80967861 - L2 LINE L2 -25 3247 3194 557 244 30 0 chr1 201225827 201225958 -80967706 + L2 LINE L2 2336 2470 -844 1836 169 11 43 chr1 201225958 201226395 -80967269 + pTR5 LTR ERV1 743 1165 -1273 368 210 30 20 chr1 201226399 201226499 -80967165 + LTR30 LTR ERV1 542 642 -80 1963 89 11 0 chr1 201226500 201226771 -80966893 + LTR12 LTR ERV1 377 650 -64 1672 233 113 41 chr1 201226772 201226954 -80966710 + L2 LINE L2 2416 2584 -729 2204 131 27 3 chr1 201226954 201227282 -80966382 + MER1B DNA MER1_type 2 337 0 1672 233 113 41 chr1 201227282 201227933 -80965731 + L2 LINE L2 2584 3312 -1 1547 202 53 0 chr1 201228053 201228166 -80965498 + AluJb SINE Alu 1 107 -205 1882 114 103 0 chr1 201228166 201228439 -80965225 + AluSx SINE Alu 4 304 -8 1547 202 53 0 chr1 201228439 201228607 -80965057 + AluJb SINE Alu 107 297 -15 2242 84 0 3 chr1 201230976 201231297 -80962367 - AluSg SINE Alu 0 320 1 2412 63 0 10 chr1 201231602 201231903 -80961761 + AluY SINE Alu 1 298 -13 368 153 0 0 chr1 201231933 201231992 -80961672 - L2 LINE L2 0 3313 3255 1029 176 6 0 chr1 201232440 201232622 -80961042 + L1MB3 LINE L1 5758 5940 -234 446 221 137 6 chr1 201232629 201232753 -80960911 + L1MB3 LINE L1 6054 6181 -2 749 136 114 53 chr1 201232755 201232983 -80960681 - Charlie1 DNA MER1_type -46 2715 2474 861 332 88 46 chr1 201233014 201233319 -80960345 - L2 LINE L2 -238 3034 2743 1653 93 0 5 chr1 201233319 201233534 -80960130 - AluSg/x SINE Alu -13 299 86 861 332 88 46 chr1 201233534 201233833 -80959831 - L2 LINE L2 -529 2743 2404 768 158 0 0 chr1 201233846 201233965 -80959699 - Tigger4(Zombi) DNA MER2_type 0 2731 2613 1232 146 47 43 chr1 201233965 201234218 -80959446 + THE1C LTR MaLR 1 254 -121 259 161 71 18 chr1 201234229 201234285 -80959379 + MER34C LTR ERV1 40 98 -487 520 200 0 36 chr1 201234397 201234507 -80959157 + AluJb SINE Alu 195 300 -12 4444 123 93 9 chr1 201234507 201235268 -80958396 + L1PB4 LINE L1 5322 6146 -10 14613 126 45 24 chr1 201235343 201235454 -80958210 + Tigger1 DNA MER2_type 2 109 -2309 2041 147 0 6 chr1 201235454 201235766 -80957898 - AluJb SINE Alu -2 310 1 14613 126 45 24 chr1 201235766 201236047 -80957617 + Tigger1 DNA MER2_type 109 383 -2035 2353 114 0 0 chr1 201236047 201236355 -80957309 + AluSg SINE Alu 3 310 0 14613 126 45 24 chr1 201236355 201237372 -80956292 + Tigger1 DNA MER2_type 383 1377 -1041 1586 150 42 42 chr1 201237372 201237659 -80956005 + AluJo SINE Alu 1 287 -25 14613 126 45 24 chr1 201237659 201238613 -80955051 + Tigger1 DNA MER2_type 1377 2417 -1 214 167 42 0 chr1 201239132 201239180 -80954484 + (TTTAA)n Simple_repeat Simple_repeat 3 52 0 436 196 0 21 chr1 201239189 201239286 -80954378 - MER106B DNA MER1_type -908 151 57 198 171 0 0 chr1 201239961 201240002 -80953662 + (TG)n Simple_repeat Simple_repeat 2 42 0 343 351 69 47 chr1 201240639 201240726 -80952938 + L2 LINE L2 2149 2233 -1081 1448 222 108 40 chr1 201240726 201241199 -80952465 - MLT1D LTR MaLR 0 505 1 343 351 69 47 chr1 201241199 201241575 -80952089 + L2 LINE L2 2233 2622 -692 329 306 106 35 chr1 201242358 201242557 -80951107 - MIR SINE MIR -48 214 2 2218 102 3 13 chr1 201242870 201243175 -80950489 + AluSx SINE Alu 1 302 -10 1611 166 3 28 chr1 201244015 201244340 -80949324 + AluSx SINE Alu 1 318 0 1281 143 59 67 chr1 201244493 201244625 -80949039 + MER46A DNA MER2_type 1 132 -2599 2036 111 21 7 chr1 201244625 201244914 -80948750 + AluSx SINE Alu 3 295 -17 1281 143 59 67 chr1 201244914 201245019 -80948645 + MER46A DNA MER2_type 132 236 0 1055 161 0 0 chr1 201245114 201245276 -80948388 - AluJb SINE Alu -14 298 137 225 282 153 24 chr1 201245699 201245823 -80947841 - MIR SINE MIR 0 262 123 710 174 92 68 chr1 201246067 201246274 -80947390 + L1 LINE L1 3663 3874 -2272 23 0 0 0 chr1 201246376 201246399 -80947265 + AT_rich Low_complexity Low_complexity 1 23 0 527 234 102 0 chr1 201246436 201246564 -80947100 + MIR SINE MIR 2 142 -120 2049 144 0 0 chr1 201247239 201247538 -80946126 + AluSx SINE Alu 1 299 -13 827 176 0 8 chr1 201247640 201247771 -80945893 + FLAM_A SINE Alu 1 130 -3 22 0 0 0 chr1 201247871 201247893 -80945771 + AT_rich Low_complexity Low_complexity 1 22 0 358 264 22 0 chr1 201248153 201248244 -80945420 - MER20 DNA MER1_type 0 219 127 249 105 0 0 chr1 201248244 201248282 -80945382 + L1M3 LINE L1 5409 5446 -737 1078 138 25 0 chr1 201248282 201248442 -80945222 - AluJo SINE Alu -148 164 1 258 246 0 18 chr1 201248442 201248499 -80945165 - MER5A DNA MER1_type -120 69 14 765 226 0 0 chr1 201248645 201248778 -80944886 + FLAM_A SINE Alu 1 133 0 1575 196 28 3 chr1 201248845 201249130 -80944534 + AluJb SINE Alu 1 292 -20 1927 143 137 31 chr1 201249169 201249527 -80944137 + MSTD LTR MaLR 1 396 0 244 180 20 0 chr1 201249599 201249649 -80944015 + MER103 DNA DNA 2 52 -114 2032 119 0 35 chr1 201249722 201250034 -80943630 + AluSx SINE Alu 11 311 -1 223 294 24 47 chr1 201250235 201250320 -80943344 - MIR SINE MIR -156 106 24 3476 195 65 31 chr1 201250460 201250874 -80942790 + L1MD2 LINE L1 5305 5704 -655 2271 117 0 0 chr1 201250874 201251181 -80942483 + AluSx SINE Alu 1 307 -5 3476 195 65 31 chr1 201251181 201251566 -80942098 + L1MD2 LINE L1 5704 6131 -228 1920 155 32 15 chr1 201252220 201252562 -80941102 - Tigger7 DNA MER2_type -1 2486 2139 321 351 0 0 chr1 201252610 201252704 -80940960 - L2 LINE L2 -14 3299 3206 209 315 19 28 chr1 201252915 201253023 -80940641 - L2 LINE L2 -462 2852 2746 2248 103 0 3 chr1 201253205 201253505 -80940159 - AluSq SINE Alu -14 299 1 4993 148 46 58 chr1 201253507 201253905 -80939759 + L1MA4A LINE L1 4998 5399 -904 2349 101 0 0 chr1 201253905 201254211 -80939453 + AluSg SINE Alu 1 306 -4 4993 148 46 58 chr1 201254211 201255105 -80938559 + L1MA4A LINE L1 5399 6271 -32 879 73 0 0 chr1 201255244 201255354 -80938310 - AluSq/x SINE Alu -202 111 2 311 286 93 14 chr1 201255751 201255891 -80937773 - MIR SINE MIR -8 254 104 1645 192 7 3 chr1 201255939 201256236 -80937428 - AluJo SINE Alu -12 300 3 180 0 0 0 chr1 201256247 201256267 -80937397 + (T)n Simple_repeat Simple_repeat 1 20 0 32 0 0 43 chr1 201257034 201257053 -80936611 + AT_rich Low_complexity Low_complexity 1 19 -26 1352 191 40 0 chr1 201257053 201257331 -80936333 + AluSx SINE Alu 1 289 -23 32 0 0 43 chr1 201257331 201257358 -80936306 + AT_rich Low_complexity Low_complexity 19 45 0 653 245 73 0 chr1 201257570 201257721 -80935943 - MLT1F LTR MaLR -9 533 372 1402 95 17 48 chr1 201258378 201258609 -80935055 + AluY SINE Alu 67 290 -21 1356 212 0 7 chr1 201258645 201258938 -80934726 + AluSx SINE Alu 2 292 -20 322 257 243 53 chr1 201259275 201259427 -80934237 + MER5A DNA MER1_type 9 189 0 1856 167 151 18 chr1 201259772 201260208 -80933456 + LTR54B LTR ERV1 1 494 -4 457 273 9 0 chr1 201260405 201260515 -80933149 - MER81 DNA DNA -3 111 1 5445 132 52 56 chr1 201260887 201261145 -80932519 + L1MA4A LINE L1 5135 5392 -911 2383 98 0 0 chr1 201261145 201261451 -80932213 + AluSg SINE Alu 1 306 -4 5445 132 52 56 chr1 201261451 201262360 -80931304 + L1MA4A LINE L1 5392 6296 -7 1608 144 8 4 chr1 201262393 201262657 -80931007 + AluSx SINE Alu 47 311 -1 654 200 57 11 chr1 201262665 201262836 -80930828 + Charlie2 DNA MER1_type 2539 2717 -145 1209 219 122 13 chr1 201262836 201263147 -80930517 + MER2 DNA MER2_type 1 345 0 357 250 109 30 chr1 201263275 201263412 -80930252 - L1MD2 LINE L1 -41 6141 5981 2375 80 0 0 chr1 201263916 201264215 -80929449 + AluY SINE Alu 1 299 -12 1495 219 74 29 chr1 201264347 201264411 -80929253 - MSTD LTR MaLR 0 396 336 1470 187 82 11 chr1 201264411 201264704 -80928960 + AluJo SINE Alu 1 312 0 1495 219 74 29 chr1 201264704 201265017 -80928647 - MSTD LTR MaLR -60 336 1 1734 115 96 19 chr1 201265072 201265233 -80928431 - AluSg SINE Alu -18 292 100 2294 106 3 0 chr1 201265233 201265544 -80928120 - AluSx SINE Alu 0 312 1 1734 115 96 19 chr1 201265544 201265652 -80928012 - AluSg SINE Alu -210 100 2 23 0 0 0 chr1 201266098 201266121 -80927543 + AT_rich Low_complexity Low_complexity 1 23 0 248 143 61 0 chr1 201266162 201266211 -80927453 - AluJ/FRAM SINE Alu -20 282 231 1426 173 52 4 chr1 201266211 201266460 -80927204 - AluJo SINE Alu -51 261 1 2230 125 0 0 chr1 201267557 201267869 -80925795 + AluSq SINE Alu 1 312 -1 1319 104 60 0 chr1 201268105 201268288 -80925376 - AluSc SINE Alu -115 194 1 2277 101 0 3 chr1 201268642 201268940 -80924724 + AluSc SINE Alu 1 297 -12 1438 82 0 6 chr1 201268965 201269147 -80924517 + AluSp SINE Alu 5 185 -128 233 113 65 32 chr1 201269157 201269219 -80924445 + L1MCa LINE L1 2016 2079 -4347 1193 117 0 6 chr1 201269300 201269573 -80924091 + AluSx SINE Alu 2 323 0 784 186 0 0 chr1 201269694 201269812 -80923852 - FLAM_C SINE Alu -25 118 1 2191 111 3 29 chr1 201270470 201270785 -80922879 - AluSx SINE Alu -5 307 1 1837 99 50 50 chr1 201270829 201271131 -80922533 + L1MA2 LINE L1 6003 6304 0 2292 117 0 0 chr1 201271330 201271638 -80922026 - AluSx SINE Alu -4 308 1 2103 146 0 13 chr1 201272757 201273073 -80920591 + AluSx SINE Alu 1 312 0 2043 113 3 51 chr1 201273266 201273577 -80920087 + AluSx SINE Alu 1 296 -16 282 363 30 51 chr1 201274164 201274401 -80919263 - L2 LINE L2 -63 3209 2978 1810 134 0 59 chr1 201274474 201274795 -80918869 + AluJb SINE Alu 1 302 -10 237 310 44 35 chr1 201274910 201275023 -80918641 - L2 LINE L2 -496 2818 2705 22 35 0 0 chr1 201275394 201275423 -80918241 + AT_rich Low_complexity Low_complexity 1 29 0 453 315 35 44 chr1 201276049 201276252 -80917412 + MIR SINE MIR 5 205 -57 1925 198 123 68 chr1 201276273 201276429 -80917235 + L2 LINE L2 828 974 -2340 2034 117 0 61 chr1 201276429 201276755 -80916909 - AluSc SINE Alu -3 306 1 1925 198 123 68 chr1 201276755 201277175 -80916489 + L2 LINE L2 974 1436 -1878 1087 127 0 6 chr1 201277178 201277344 -80916320 - L1PB4 LINE L1 -250 5906 5742 877 124 16 0 chr1 201277673 201277802 -80915862 - AluJb SINE Alu -12 300 170 1217 137 128 0 chr1 201277805 201278041 -80915623 + L1PB4 LINE L1 5906 6168 0 341 295 144 22 chr1 201278290 201278429 -80915235 + MIR3 SINE MIR 23 178 -30 221 95 0 48 chr1 201279214 201279256 -80914408 + (GGA)n Simple_repeat Simple_repeat 3 42 0 214 312 0 0 chr1 201279272 201279349 -80914315 + GA-rich Low_complexity Low_complexity 1 77 0 23 0 0 0 chr1 201280097 201280120 -80913544 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 201280483 201280506 -80913158 + AT_rich Low_complexity Low_complexity 1 23 0 1953 117 4 0 chr1 201280621 201280894 -80912770 + AluSx SINE Alu 1 274 -38 234 304 0 14 chr1 201281057 201281126 -80912538 + L2 LINE L2 2409 2476 -838 2374 78 17 0 chr1 201281128 201281424 -80912240 - AluSg SINE Alu -9 301 1 693 236 7 0 chr1 201281523 201281667 -80911997 - MIR SINE MIR -101 161 17 370 165 165 58 chr1 201281722 201281825 -80911839 + L2 LINE L2 3199 3312 -1 581 278 133 0 chr1 201281989 201282162 -80911502 - MIR3 SINE MIR -6 202 7 2304 76 7 3 chr1 201282588 201282889 -80910775 + AluSg SINE Alu 1 302 -8 1761 147 63 0 chr1 201282907 201283193 -80910471 + AluSx SINE Alu 9 312 0 353 287 193 59 chr1 201283908 201284386 -80909278 + L1M2 LINE L1 888 1429 -5420 339 25 0 0 chr1 201284450 201284490 -80909174 + (CCG)n Simple_repeat Simple_repeat 2 41 0 329 271 34 126 chr1 201284521 201284846 -80908818 + L1M2 LINE L1 822 1116 -5733 1648 126 165 3 chr1 201286115 201286424 -80907240 + MER46B DNA MER2_type 3 236 0 1034 238 8 25 chr1 201286424 201286659 -80907005 + MIR SINE MIR 2 232 -30 216 0 0 0 chr1 201286739 201286763 -80906901 + (TA)n Simple_repeat Simple_repeat 1 24 0 2014 127 0 0 chr1 201287219 201287546 -80906118 + AluSx SINE Alu 1 327 0 2370 79 3 0 chr1 201287947 201288250 -80905414 - AluY SINE Alu -4 307 4 244 278 178 0 chr1 201288271 201288361 -80905303 - L3 LINE CR1 -4 1573 1468 1391 70 0 21 chr1 201288402 201288588 -80905076 + AluY SINE Alu 1 182 -129 1848 118 0 11 chr1 201288708 201288978 -80904686 - AluSq SINE Alu -4 309 43 1800 153 18 0 chr1 201289096 201289370 -80904294 - AluSx SINE Alu -33 279 1 893 250 121 107 chr1 201290145 201290599 -80903065 + L2 LINE L2 2622 3099 -214 1808 157 0 20 chr1 201290599 201290898 -80902766 + AluSx SINE Alu 2 294 -18 893 250 121 107 chr1 201290898 201291114 -80902550 + L2 LINE L2 3099 3311 -2 2229 97 7 0 chr1 201291463 201291773 -80901891 - AluSq SINE Alu 0 313 1 1813 140 80 130 chr1 201291974 201292158 -80901506 - MER21B LTR ERV1 0 863 671 2381 77 13 0 chr1 201292158 201292456 -80901208 - AluSp SINE Alu -11 302 1 1813 140 80 130 chr1 201292456 201292757 -80900907 - MER21B LTR ERV1 -192 671 402 1959 179 46 102 chr1 201292858 201293338 -80900326 - MER21B LTR ERV1 -410 453 1 2323 100 0 10 chr1 201293906 201294217 -80899447 - AluSq SINE Alu -5 308 1 2139 133 0 7 chr1 201295890 201296199 -80897465 - AluSx SINE Alu -5 307 1 1760 79 8 21 chr1 201296220 201296461 -80897203 - AluY SINE Alu -7 304 67 731 228 97 4 chr1 201297081 201297268 -80896396 + MLT1F LTR MaLR 372 533 -9 4202 162 17 36 chr1 201297329 201297499 -80896165 + L1MB3 LINE L1 5267 5439 -744 2092 141 0 0 chr1 201297499 201297804 -80895860 + AluSx SINE Alu 1 305 -7 4202 162 17 36 chr1 201297804 201298462 -80895202 + L1MB3 LINE L1 5439 6079 -104 553 125 0 0 chr1 201298509 201298581 -80895083 + AluSq SINE Alu 9 80 -233 709 83 9 37 chr1 201298581 201298689 -80894975 - MER68 LTR ERV1 -457 105 1 1759 80 0 36 chr1 201299041 201299291 -80894373 + AluSq SINE Alu 72 312 -1 476 103 0 0 chr1 201299293 201299361 -80894303 + L1MB3 LINE L1 6109 6176 -7 530 244 142 22 chr1 201299382 201299656 -80894008 + L1MEd LINE L1 895 1201 -4918 329 279 127 0 chr1 201299693 201299851 -80893813 + L1MEd LINE L1 1243 1420 -4709 204 67 0 0 chr1 201300050 201300080 -80893584 + (A)n Simple_repeat Simple_repeat 1 30 0 2119 131 7 0 chr1 201300080 201300378 -80893286 + AluSq SINE Alu 1 300 -13 1800 171 7 3 chr1 201300387 201300685 -80892979 + AluJb SINE Alu 2 300 -12 185 256 0 26 chr1 201300685 201300724 -80892940 + MER5A DNA MER1_type 145 182 -7 650 188 7 16 chr1 201300755 201300896 -80892768 + L1MC4 LINE L1 7883 7995 0 2192 103 7 3 chr1 201300905 201301215 -80892449 + AluSx SINE Alu 1 311 -1 1884 113 8 0 chr1 201301456 201301713 -80891951 + AluSq SINE Alu 36 294 -19 1196 104 0 6 chr1 201301713 201301876 -80891788 + AluSg/x SINE Alu 132 293 -17 2058 147 0 0 chr1 201302501 201302800 -80890864 - AluSx SINE Alu -13 299 1 399 267 121 42 chr1 201303827 201303992 -80889672 - MIR SINE MIR -56 206 29 223 191 117 43 chr1 201304089 201304183 -80889481 + MIR SINE MIR 162 262 0 1962 155 0 3 chr1 201304765 201305061 -80888603 + AluJb SINE Alu 1 295 -17 1641 121 143 8 chr1 201306295 201306560 -80887104 - AluSg1 SINE Alu -8 301 1 2161 128 0 0 chr1 201306838 201307134 -80886530 - AluSx SINE Alu -16 296 1 234 234 104 0 chr1 201307197 201307274 -80886390 - L1P2 LINE L1 -328 5826 5742 378 0 0 0 chr1 201307460 201307502 -80886162 + (TA)n Simple_repeat Simple_repeat 2 43 0 529 293 139 35 chr1 201307518 201307979 -80885685 - L1M4 LINE L1 -1336 4810 4302 885 121 45 45 chr1 201308066 201308223 -80885441 - FRAM SINE Alu -18 158 2 351 240 0 80 chr1 201308233 201308333 -80885331 - HAL1 LINE L1 -2 2505 2414 375 237 11 21 chr1 201308342 201308421 -80885243 + MER33 DNA MER1_type 3 82 -2503 1325 180 81 18 chr1 201308421 201308705 -80884959 + AluJo SINE Alu 1 302 0 375 237 11 21 chr1 201308705 201308718 -80884946 + MER33 DNA MER1_type 82 94 -230 630 167 148 19 chr1 201308743 201308953 -80884711 + MER33 DNA MER1_type 69 305 -19 2332 102 3 0 chr1 201308953 201309258 -80884406 - AluSp SINE Alu -7 306 1 2342 96 0 0 chr1 201309271 201309572 -80884092 - AluSp SINE Alu -12 301 1 283 300 50 0 chr1 201309614 201309694 -80883970 + L2 LINE L2 3198 3281 -32 2064 143 77 6 chr1 201309727 201310077 -80883587 + THE1C LTR MaLR 1 375 0 584 121 88 0 chr1 201310215 201310306 -80883358 - AluSx SINE Alu -12 297 199 * 749 156 18 0 chr1 201310299 201310408 -80883256 - AluSx SINE Alu -200 112 2 1444 207 23 20 chr1 201310484 201310788 -80882876 - AluJo SINE Alu -7 305 1 22 0 0 0 chr1 201311090 201311112 -80882552 + AT_rich Low_complexity Low_complexity 1 22 0 2123 107 10 10 chr1 201311140 201311450 -80882214 - AluY SINE Alu 0 311 2 1985 149 16 3 chr1 201311495 201311803 -80881861 - AluSx SINE Alu 0 312 1 1499 163 57 11 chr1 201311866 201312149 -80881515 + AluJo SINE Alu 3 298 -14 253 364 45 0 chr1 201312336 201312468 -80881196 - MIR3 SINE MIR -4 204 67 1610 210 58 51 chr1 201312468 201312986 -80880678 - MER39 LTR ERV1 0 707 6 180 413 12 0 chr1 201313144 201313224 -80880440 - MIR SINE MIR -180 82 2 349 270 164 19 chr1 201313240 201313399 -80880265 - MIR SINE MIR -17 245 64 2535 111 31 0 chr1 201313519 201313870 -80879794 + L1PA16 LINE L1 5799 6160 -6 201 244 0 0 chr1 201314196 201314241 -80879423 + MIR SINE MIR 17 61 -201 611 273 41 0 chr1 201314316 201314488 -80879176 + MIR SINE MIR 84 262 0 27 0 0 0 chr1 201314546 201314573 -80879091 + AT_rich Low_complexity Low_complexity 1 27 0 473 259 151 33 chr1 201315474 201315686 -80877978 - L1MC4a LINE L1 -1950 5858 5622 307 280 46 96 chr1 201315772 201315880 -80877784 - L1MC4a LINE L1 -1310 4836 4743 1002 263 15 15 chr1 201315880 201316139 -80877525 + MIR SINE MIR 4 262 0 307 280 46 96 chr1 201316139 201316248 -80877416 - L1MC4a LINE L1 -1403 4743 4630 226 167 35 175 chr1 201316253 201316367 -80877297 - MLT1I LTR MaLR -6 403 306 701 309 40 29 chr1 201316424 201316702 -80876962 - MLT1I LTR MaLR -119 290 10 2471 86 0 0 chr1 201316702 201317004 -80876660 + AluSg SINE Alu 1 302 -8 2120 124 0 3 chr1 201317266 201317564 -80876100 - AluSx SINE Alu -15 297 1 2191 102 0 7 chr1 201317702 201317985 -80875679 + AluSx SINE Alu 2 282 -30 226 0 0 0 chr1 201317985 201318010 -80875654 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 755 230 20 36 chr1 201318031 201318227 -80875437 - MIR SINE MIR -68 194 2 3047 168 66 8 chr1 201320816 201321346 -80872318 + MER68 LTR ERV1 1 561 -1 2214 133 0 0 chr1 201321680 201321982 -80871682 + AluSx SINE Alu 1 302 -10 1902 163 7 3 chr1 201321991 201322292 -80871372 + AluJo SINE Alu 1 302 -10 332 261 101 0 chr1 201322359 201322478 -80871186 + MIR SINE MIR 124 254 -8 1921 89 0 4 chr1 201322875 201323122 -80870542 + AluSx SINE Alu 2 247 -65 271 233 70 0 chr1 201323543 201323629 -80870035 - MIR SINE MIR -3 259 168 209 150 0 50 chr1 201323729 201323769 -80869895 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2292 124 0 0 chr1 201323991 201324297 -80869367 - AluSx SINE Alu -6 306 1 2085 94 7 65 chr1 201324318 201324627 -80869037 - AluSx SINE Alu -21 291 1 1852 108 12 0 chr1 201324659 201324910 -80868754 + AluSg SINE Alu 1 254 -56 2389 197 94 86 chr1 201325810 201326090 -80867574 - L1M4c LINE L1 -4704 2255 1979 1871 163 0 0 chr1 201326090 201326384 -80867280 - AluSx SINE Alu -18 294 1 2389 197 94 86 chr1 201326384 201326816 -80866848 - L1M4c LINE L1 -4980 1979 1552 2134 124 3 0 chr1 201326816 201327106 -80866558 - AluY SINE Alu -14 297 7 2246 113 3 0 chr1 201327113 201327406 -80866258 - AluSx SINE Alu -18 294 1 2389 197 94 86 chr1 201327406 201328024 -80865640 - L1M4c LINE L1 -5412 1547 918 2322 101 0 0 chr1 201328451 201328759 -80864905 + AluSx SINE Alu 1 308 -4 2263 113 0 0 chr1 201328822 201329115 -80864549 + AluSx SINE Alu 7 299 -13 2273 103 0 10 chr1 201329481 201329791 -80863873 - AluSc SINE Alu -2 307 1 2352 96 0 3 chr1 201329792 201330094 -80863570 - AluSx SINE Alu -11 301 1 390 230 0 0 chr1 201330130 201330204 -80863460 - MLT1L LTR MaLR -536 79 6 742 148 0 0 chr1 201330673 201330781 -80862883 + FLAM_A SINE Alu 8 115 -27 1999 174 3 0 chr1 201330788 201331093 -80862571 - AluSx SINE Alu -6 306 1 186 43 0 0 chr1 201331114 201331137 -80862527 + (T)n Simple_repeat Simple_repeat 1 23 0 1033 185 51 37 chr1 201331761 201331977 -80861687 + L1MC1 LINE L1 6093 6311 -22 1944 129 0 4 chr1 201331977 201332255 -80861409 + AluSx SINE Alu 1 277 -35 435 19 0 0 chr1 201332257 201332309 -80861355 + (CA)n Simple_repeat Simple_repeat 1 52 0 2305 80 0 38 chr1 201332315 201332629 -80861035 + AluY SINE Alu 1 302 -9 2102 117 0 7 chr1 201332664 201332946 -80860718 + AluSx SINE Alu 7 286 -26 412 88 0 0 chr1 201333130 201333187 -80860477 + Alu SINE Alu 235 291 -21 477 230 42 42 chr1 201333187 201333352 -80860312 - L3 LINE CR1 -198 1379 1215 2275 116 0 3 chr1 201333477 201333788 -80859876 - AluSg SINE Alu 0 310 1 190 318 30 0 chr1 201334000 201334066 -80859598 + MIR3 SINE MIR 133 200 -8 408 211 156 23 chr1 201334321 201334449 -80859215 - MLT1H LTR MaLR 0 549 405 2538 110 34 18 chr1 201334556 201334938 -80858726 + MLT1B LTR MaLR 3 390 0 1970 140 0 7 chr1 201335004 201335290 -80858374 - AluSx SINE Alu -27 285 2 350 231 138 50 chr1 201335292 201335452 -80858212 - L2 LINE L2 -8 3305 3132 235 143 29 100 chr1 201336096 201336166 -80857498 - MLT1K LTR MaLR -12 576 512 881 168 108 0 chr1 201336219 201336386 -80857278 + MLT1B LTR MaLR 5 189 -201 322 198 163 0 chr1 201336392 201336478 -80857186 + L1ME3A LINE L1 6022 6121 -49 315 229 0 48 chr1 201336504 201336587 -80857077 - L1MC4 LINE L1 -1340 6702 6624 1005 206 64 9 chr1 201336587 201336806 -80856858 + MER8 DNA MER2_type 6 236 -3 263 125 0 0 chr1 201336884 201336924 -80856740 + L1ME3A LINE L1 6124 6163 -7 25 0 0 0 chr1 201337155 201337180 -80856484 + AT_rich Low_complexity Low_complexity 1 25 0 2114 128 3 10 chr1 201337181 201337487 -80856177 + AluSp SINE Alu 1 304 -9 296 120 0 0 chr1 201337547 201337597 -80856067 - Alu SINE Alu 0 308 259 739 209 19 73 chr1 201337600 201337806 -80855858 + MLT1H LTR MaLR 72 266 -283 835 173 0 8 chr1 201337815 201337948 -80855716 + MLT1B LTR MaLR 6 137 -253 812 203 13 13 chr1 201337966 201338119 -80855545 - FRAM SINE Alu -13 163 11 2301 97 0 13 chr1 201338322 201338632 -80855032 - AluSx SINE Alu -6 306 1 1824 128 35 38 chr1 201338639 201338956 -80854708 - AluSx SINE Alu 0 312 1 2176 120 3 7 chr1 201338958 201339257 -80854407 - AluSx SINE Alu -14 298 1 302 164 39 198 chr1 201339427 201339545 -80854119 + MER112 DNA MER1_type 4 139 -121 1865 172 0 0 chr1 201339545 201339841 -80853823 + AluJo SINE Alu 1 296 -16 302 164 39 198 chr1 201339841 201339865 -80853799 + MER112 DNA MER1_type 139 165 -95 1723 144 30 47 chr1 201339865 201340039 -80853625 - AluJo SINE Alu -7 295 127 2181 92 0 48 chr1 201340039 201340217 -80853447 - AluSx SINE Alu -12 300 142 2328 91 3 0 chr1 201340217 201340524 -80853140 - AluSp SINE Alu -5 308 1 2181 92 0 48 chr1 201340524 201340660 -80853004 - AluSx SINE Alu -170 142 1 1723 144 30 47 chr1 201340660 201340784 -80852880 - AluJo SINE Alu -175 127 2 302 164 39 198 chr1 201340784 201340847 -80852817 + MER112 DNA MER1_type 165 177 -83 2416 89 3 3 chr1 201341945 201342249 -80851415 - AluSx SINE Alu -8 304 1 2449 193 38 2 chr1 201342348 201342794 -80850870 + MSTD-int LTR MaLR 1274 1735 0 2127 148 103 0 chr1 201342794 201343153 -80850511 + MSTD LTR MaLR 1 396 0 1748 175 19 59 chr1 201343177 201343470 -80850194 + MLT1A1 LTR MaLR 10 313 -52 2227 135 0 0 chr1 201343470 201343781 -80849883 - AluSx SINE Alu -1 311 1 207 0 0 0 chr1 201343787 201343810 -80849854 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2428 56 0 10 chr1 201343814 201344102 -80849562 - AluY SINE Alu -26 285 1 1748 175 19 59 chr1 201344102 201344167 -80849497 + MLT1A1 LTR MaLR 321 365 0 2225 126 0 3 chr1 201344624 201344926 -80848738 + AluSx SINE Alu 1 301 -11 1977 142 3 3 chr1 201344992 201345325 -80848339 + AluJb SINE Alu 1 333 0 475 266 45 7 chr1 201345440 201345603 -80848061 + MLT1H LTR MaLR 21 228 -321 2203 105 10 3 chr1 201345917 201346222 -80847442 - AluSx SINE Alu 0 312 6 348 313 62 0 chr1 201346436 201346564 -80847100 - Charlie2 DNA MER1_type -2645 137 2 2140 124 3 0 chr1 201346569 201346860 -80846804 - AluSp SINE Alu -21 292 1 214 148 37 0 chr1 201347028 201347082 -80846582 + (TA)n Simple_repeat Simple_repeat 1 56 0 1121 113 8 166 chr1 201347107 201347372 -80846292 + AluJb SINE Alu 86 308 -4 682 125 0 23 chr1 201347379 201347507 -80846157 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 1843 154 11 7 chr1 201347565 201347851 -80845813 + AluJo SINE Alu 1 287 -25 2220 83 45 0 chr1 201348062 201348351 -80845313 - AluSp SINE Alu -11 302 1 364 279 89 22 chr1 201348390 201348569 -80845095 - L2 LINE L2 -3 3310 3120 2243 112 7 0 chr1 201348853 201349156 -80844508 + AluSq SINE Alu 1 305 -8 1271 129 0 0 chr1 201349170 201349341 -80844323 + AluSg/x SINE Alu 132 302 -10 1881 128 66 7 chr1 201349618 201349907 -80843757 + AluSx SINE Alu 1 306 -6 195 163 143 0 chr1 201349924 201349973 -80843691 - MIR SINE MIR -32 230 175 441 263 29 122 chr1 201350280 201350558 -80843106 - MER41B LTR ERV1 -205 430 55 1825 157 3 65 chr1 201351212 201351537 -80842127 - AluJb SINE Alu -7 305 1 2140 109 0 0 chr1 201351725 201352048 -80841616 - AluSx SINE Alu 0 323 1 620 301 47 23 chr1 201352079 201352378 -80841286 - L1MC4 LINE L1 -32 8010 7705 2100 134 0 3 chr1 201352382 201352681 -80840983 - AluSq SINE Alu -15 298 1 1893 130 0 4 chr1 201353177 201353439 -80840225 + AluSx SINE Alu 22 282 -30 189 0 0 0 chr1 201353443 201353464 -80840200 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2089 98 3 17 chr1 201353490 201353801 -80839863 + AluSx SINE Alu 1 307 0 800 254 47 39 chr1 201354185 201354441 -80839223 - MIR SINE MIR 0 262 5 1470 172 80 60 chr1 201354820 201354998 -80838666 + MLT1D LTR MaLR 1 174 -331 2078 106 17 10 chr1 201354998 201355290 -80838374 - AluSx SINE Alu -17 295 2 1470 172 80 60 chr1 201355290 201355460 -80838204 + MLT1D LTR MaLR 174 356 -149 1860 130 69 0 chr1 201355690 201355967 -80837697 + AluSx SINE Alu 1 296 -16 195 163 143 0 chr1 201355996 201356045 -80837619 - MIR SINE MIR -32 230 175 441 263 29 122 chr1 201356352 201356630 -80837034 - MER41B LTR ERV1 -205 430 55 1879 148 3 65 chr1 201357278 201357603 -80836061 - AluJb SINE Alu -7 305 1 2292 92 0 0 chr1 201357791 201358114 -80835550 - AluSx SINE Alu 0 323 1 467 383 9 13 chr1 201358161 201358613 -80835051 - MER41B-int LTR ERV1 -286 6390 5941 2031 92 4 8 chr1 201358614 201358904 -80834760 + AluSq SINE Alu 25 313 0 198 133 0 0 chr1 201358980 201359010 -80834654 - MER5A DNA MER1_type 0 189 160 946 183 0 37 chr1 201359010 201359201 -80834463 - AluJo SINE Alu -115 197 14 21 0 0 0 chr1 201359351 201359372 -80834292 + AT_rich Low_complexity Low_complexity 1 21 0 882 215 21 42 chr1 201359465 201359702 -80833962 - MLT1H LTR MaLR -249 300 69 321 26 0 0 chr1 201360230 201360268 -80833396 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2097 117 7 0 chr1 201360268 201360559 -80833105 - AluSq SINE Alu -20 293 1 2492 60 0 7 chr1 201361189 201361490 -80832174 + AluY SINE Alu 1 299 -12 2312 115 0 0 chr1 201362481 201362786 -80830878 - AluSp SINE Alu -8 305 1 229 322 0 22 chr1 201362910 201363000 -80830664 + MIR SINE MIR 19 106 -102 319 240 27 0 chr1 201363767 201363842 -80829822 + MER5A DNA MER1_type 9 85 -104 1728 167 151 18 chr1 201364264 201364700 -80828964 + LTR54B LTR ERV1 1 494 -4 564 236 9 0 chr1 201364897 201365007 -80828657 - MER81 DNA DNA -3 111 1 269 50 0 25 chr1 201365652 201365692 -80827972 + (CA)n Simple_repeat Simple_repeat 2 40 0 966 167 31 7 chr1 201365696 201366017 -80827647 - MER93b LTR ERV1 -1 372 12 267 31 0 0 chr1 201366036 201366068 -80827596 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr1 201366421 201366447 -80827217 + (CAA)n Simple_repeat Simple_repeat 2 27 0 377 263 7 73 chr1 201366452 201366589 -80827075 + L1MEd LINE L1 537 664 -5455 2116 134 31 3 chr1 201366607 201366905 -80826759 - L1M4 LINE L1 -568 5616 5305 2048 138 3 0 chr1 201366905 201367235 -80826429 + AluSq SINE Alu 1 313 0 2116 134 31 3 chr1 201367235 201367286 -80826378 - L1M4 LINE L1 -879 5305 5257 2182 123 3 0 chr1 201367293 201367593 -80826071 - AluSq SINE Alu -12 301 1 2152 120 0 3 chr1 201367610 201367909 -80825755 - AluSq SINE Alu -15 298 1 1664 216 11 0 chr1 201367918 201368283 -80825381 - L1M4 LINE L1 -991 5155 4787 690 237 29 58 chr1 201368286 201368411 -80825253 - MLT1F LTR MaLR -374 168 48 2471 73 7 0 chr1 201368411 201368713 -80824951 + AluY SINE Alu 1 304 -7 690 237 29 58 chr1 201368713 201368760 -80824904 - MLT1F LTR MaLR -494 48 1 692 292 73 9 chr1 201368807 201369149 -80824515 + L1ME LINE L1 3957 4320 -1826 331 237 53 66 chr1 201369180 201369263 -80824401 + L1ME LINE L1 4385 4467 -1679 1999 118 7 20 chr1 201369263 201369568 -80824096 - AluSg SINE Alu -9 301 1 331 237 53 66 chr1 201369568 201369636 -80824028 + L1ME LINE L1 4467 4534 -1612 308 268 154 16 chr1 201369848 201370094 -80823570 + L1ME LINE L1 4963 5242 -904 428 294 124 5 chr1 201370103 201370321 -80823343 + L1ME LINE L1 5352 5595 -569 783 275 69 44 chr1 201370323 201370494 -80823170 - MLT1G LTR MaLR -11 556 391 850 137 8 0 chr1 201370494 201370625 -80823039 - FLAM_C SINE Alu 0 133 2 783 275 69 44 chr1 201370625 201370982 -80822682 - MLT1G LTR MaLR -176 391 24 900 180 12 35 chr1 201370982 201371154 -80822510 - FRAM SINE Alu -11 165 1 327 244 13 0 chr1 201371182 201371260 -80822404 + L1ME LINE L1 5582 5660 -510 2001 121 4 0 chr1 201371624 201371897 -80821767 - AluSx SINE Alu -38 274 1 28 61 0 0 chr1 201372364 201372413 -80821251 + AT_rich Low_complexity Low_complexity 1 49 0 2161 99 0 7 chr1 201372417 201372741 -80820923 + AluSx SINE Alu 1 322 0 1714 178 20 17 chr1 201372929 201373227 -80820437 + AluJo SINE Alu 1 299 -13 205 268 144 52 chr1 201374211 201374308 -80819356 - L2 LINE L2 -8 3305 3200 1325 220 62 24 chr1 201374414 201374833 -80818831 - Zaphod DNA AcHobo -1 4030 3596 1995 133 0 0 chr1 201374864 201375176 -80818488 + AluSx SINE Alu 1 312 0 283 120 82 104 chr1 201375197 201375228 -80818436 - Zaphod DNA AcHobo -3093 938 908 2359 89 0 22 chr1 201375228 201375541 -80818123 + AluSx SINE Alu 1 306 -6 283 120 82 104 chr1 201375541 201375573 -80818091 - Zaphod DNA AcHobo -3123 908 877 1821 152 0 30 chr1 201375573 201375869 -80817795 + AluJb SINE Alu 1 287 -25 283 120 82 104 chr1 201375869 201375987 -80817677 - Zaphod DNA AcHobo -3154 877 760 1928 159 30 0 chr1 201375998 201376293 -80817371 + AluSx SINE Alu 1 304 -8 715 260 10 10 chr1 201376314 201376518 -80817146 - L1ME3 LINE L1 -20 6142 5939 3046 150 61 16 chr1 201376518 201377123 -80816541 - L1MB8 LINE L1 0 6178 5547 502 147 49 0 chr1 201377131 201377233 -80816431 - L1MB8 LINE L1 -3783 2363 2257 2126 103 10 0 chr1 201377233 201377525 -80816139 - AluSp SINE Alu -18 295 1 917 236 29 77 chr1 201377687 201378123 -80815541 - MLT1E2 LTR MaLR -186 319 4 2126 114 0 0 chr1 201378178 201378479 -80815185 - AluSx SINE Alu 0 301 1 366 246 8 90 chr1 201378726 201378860 -80814804 - MIR SINE MIR -50 212 90 2122 82 8 4 chr1 201379961 201380229 -80813435 - AluSc SINE Alu -18 291 23 1861 158 0 3 chr1 201380247 201380532 -80813132 + AluJb SINE Alu 1 284 -28 1791 110 0 0 chr1 201381863 201382109 -80811555 - AluSg SINE Alu -5 305 60 2135 65 25 4 chr1 201382109 201382384 -80811280 - AluSc SINE Alu -27 282 1 2188 90 3 10 chr1 201382386 201382686 -80810978 - AluSx SINE Alu -14 298 1 2067 138 3 3 chr1 201383623 201383927 -80809737 + AluSx SINE Alu 1 304 -8 1001 175 12 0 chr1 201383934 201384105 -80809559 + AluSg/x SINE Alu 140 312 0 2702 190 100 51 chr1 201384177 201384913 -80808751 + L1MB8 LINE L1 4492 5190 -988 1763 179 11 0 chr1 201384913 201385225 -80808439 + AluSx SINE Alu 1 315 0 2702 190 100 51 chr1 201385225 201385260 -80808404 + L1MB8 LINE L1 5190 5222 -956 2186 100 3 10 chr1 201385260 201385561 -80808103 + AluSx SINE Alu 2 300 -12 2702 190 100 51 chr1 201385561 201386191 -80807473 + L1MB8 LINE L1 5222 5985 -193 1682 182 0 27 chr1 201386688 201386985 -80806679 - AluJo SINE Alu -23 289 1 2573 47 0 0 chr1 201387339 201387637 -80806027 - AluY SINE Alu -13 298 1 260 233 153 7 chr1 201387858 201388008 -80805656 - L1ME4a LINE L1 -207 5914 5743 299 273 118 31 chr1 201388032 201388197 -80805467 + L1MEd LINE L1 1083 1232 -5078 2224 90 14 0 chr1 201388197 201388486 -80805178 + AluSp SINE Alu 2 294 -19 299 273 118 31 chr1 201388486 201388647 -80805017 + L1MEd LINE L1 1232 1472 -4838 453 259 58 11 chr1 201389765 201389939 -80803725 - MARNA DNA Mariner -235 351 170 226 327 0 0 chr1 201390004 201390059 -80803605 + L3 LINE CR1 1504 1558 -19 195 69 0 0 chr1 201391674 201391703 -80801961 + (TA)n Simple_repeat Simple_repeat 2 30 0 299 140 32 11 chr1 201391750 201391843 -80801821 + (TA)n Simple_repeat Simple_repeat 2 96 0 270 345 14 7 chr1 201392085 201392224 -80801440 - L2 LINE L2 -883 2431 2292 228 220 0 0 chr1 201392271 201392321 -80801343 + MER53 DNA DNA 1 50 -139 2112 99 46 0 chr1 201392898 201393181 -80800483 + AluSg SINE Alu 1 296 -14 1934 84 4 0 chr1 201393621 201393859 -80799805 + AluSg SINE Alu 60 298 -12 266 44 0 67 chr1 201395134 201395179 -80798485 + (A)n Simple_repeat Simple_repeat 1 42 0 186 317 10 69 chr1 201396191 201396292 -80797372 - MIR SINE MIR -74 188 94 2331 78 10 0 chr1 201396568 201396863 -80796801 + AluSp SINE Alu 3 300 -13 668 163 43 60 chr1 201397483 201397513 -80796151 + MER20 DNA MER1_type 30 59 -160 756 168 0 8 chr1 201397513 201397638 -80796026 - FLAM_A SINE Alu -5 128 5 668 163 43 60 chr1 201397638 201397791 -80795873 + MER20 DNA MER1_type 59 210 -9 284 325 87 24 chr1 201398094 201398220 -80795444 - L2 LINE L2 0 3272 3139 229 365 0 0 chr1 201398408 201398482 -80795182 + L2 LINE L2 3160 3233 -39 194 294 112 59 chr1 201398534 201398581 -80795083 - L2 LINE L2 -1243 2071 2028 1671 165 45 0 chr1 201398581 201398872 -80794792 + AluJb SINE Alu 1 304 -8 194 294 112 59 chr1 201398872 201399011 -80794653 - L2 LINE L2 -1286 2028 1875 232 405 0 0 chr1 201399014 201399103 -80794561 - L2 LINE L2 -1408 1906 1818 2068 120 3 0 chr1 201399757 201400040 -80793624 + AluSx SINE Alu 1 284 -28 2096 110 0 7 chr1 201400094 201400376 -80793288 + AluSx SINE Alu 7 286 -26 209 333 73 0 chr1 201400748 201400871 -80792793 + L2 LINE L2 2724 2855 -459 324 211 0 0 chr1 201401509 201401580 -80792084 + GA-rich Low_complexity Low_complexity 2 72 0 263 180 20 0 chr1 201401581 201401631 -80792033 + G-rich Low_complexity Low_complexity 2 52 0 26 30 0 0 chr1 201401930 201401963 -80791701 + AT_rich Low_complexity Low_complexity 1 33 0 2343 98 0 0 chr1 201402021 201402317 -80791347 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr1 201403011 201403031 -80790633 + (TA)n Simple_repeat Simple_repeat 2 21 0 1629 149 58 7 chr1 201403362 201403637 -80790027 - AluJb SINE Alu -23 289 1 636 275 6 11 chr1 201403757 201403935 -80789729 + MER8 DNA MER2_type 1 177 -62 414 187 0 0 chr1 201403966 201404041 -80789623 - Tigger2 DNA MER2_type -2643 75 1 27 100 0 0 chr1 201405084 201405174 -80788490 + AT_rich Low_complexity Low_complexity 1 90 0 271 91 45 0 chr1 201405418 201405462 -80788202 - Alu SINE Alu -9 293 248 1564 181 7 11 chr1 201405466 201405743 -80787921 - AluJb SINE Alu -36 276 1 489 244 23 8 chr1 201406271 201406402 -80787262 + MIR SINE MIR 95 227 -35 2051 125 13 35 chr1 201406424 201406737 -80786927 - AluSx SINE Alu -6 306 1 1960 110 45 17 chr1 201406750 201407040 -80786624 - AluSq SINE Alu -14 299 2 353 200 86 57 chr1 201407116 201407221 -80786443 - MIR SINE MIR -153 109 2 1036 175 40 0 chr1 201407654 201407831 -80785833 - AluJo SINE Alu -123 189 6 2491 83 3 0 chr1 201407871 201408183 -80785481 - AluSp SINE Alu 0 313 1 1850 188 140 10 chr1 201408348 201408842 -80784822 + LTR64 LTR ERVK 1 558 0 2113 117 28 0 chr1 201409067 201409358 -80784306 - AluSp SINE Alu -14 299 1 941 140 0 7 chr1 201409361 201409497 -80784167 - AluSq/x SINE Alu -178 135 1 201 333 0 37 chr1 201410442 201410496 -80783168 + L3 LINE CR1 1497 1548 -29 427 284 74 31 chr1 201410560 201410722 -80782942 - L2 LINE L2 -458 2856 2688 1011 98 0 0 chr1 201411330 201411462 -80782202 - AluSq/x SINE Alu -180 132 1 527 256 108 63 chr1 201411875 201412144 -80781520 + MLT1J LTR MaLR 3 283 -228 1968 189 83 95 chr1 201412180 201412916 -80780748 + LTR8A LTR ERV1 1 727 0 359 255 81 13 chr1 201413095 201413244 -80780420 + MLT1J LTR MaLR 353 511 0 1926 132 42 11 chr1 201413333 201413620 -80780044 - AluSg SINE Alu -12 298 3 1285 117 0 11 chr1 201413705 201413885 -80779779 - AluSp SINE Alu -11 302 125 1815 162 3 13 chr1 201414002 201414304 -80779360 - AluJb SINE Alu -13 299 1 350 261 0 26 chr1 201414681 201414796 -80778868 + LTR67 LTR ERVL 431 542 -15 756 155 0 42 chr1 201414829 201414971 -80778693 + FLAM_C SINE Alu 1 136 -7 197 237 0 34 chr1 201415168 201415227 -80778437 - MIR3 SINE MIR -15 193 137 721 143 131 12 chr1 201415371 201415539 -80778125 + MER53 DNA DNA 2 189 0 299 203 189 0 chr1 201415652 201415726 -80777938 - MIR3 SINE MIR -21 187 100 2323 105 0 6 chr1 201416206 201416519 -80777145 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr1 201417185 201417206 -80776458 + AT_rich Low_complexity Low_complexity 1 21 0 2047 92 0 4 chr1 201417613 201417886 -80775778 + AluY SINE Alu 1 272 -39 2091 98 28 0 chr1 201418037 201418322 -80775342 - AluSg SINE Alu -17 293 1 234 0 0 0 chr1 201418955 201418981 -80774683 + (T)n Simple_repeat Simple_repeat 1 26 0 841 160 7 7 chr1 201419001 201419145 -80774519 - AluJb SINE Alu -168 144 1 1316 175 80 42 chr1 201419187 201419473 -80774191 - AluJo SINE Alu -15 297 1 2095 105 20 0 chr1 201419695 201419990 -80773674 - AluSg SINE Alu -9 301 1 1510 167 0 0 chr1 201420103 201420337 -80773327 + AluJo SINE Alu 2 235 -77 298 65 16 22 chr1 201420376 201420437 -80773227 + Alu SINE Alu 253 292 -10 2355 89 0 7 chr1 201421309 201421600 -80772064 + AluSg SINE Alu 1 289 -21 423 249 113 101 chr1 201421778 201421998 -80771666 - L1M4 LINE L1 -804 5342 5126 2367 101 0 16 chr1 201421998 201422315 -80771349 - AluSx SINE Alu 0 312 1 423 249 113 101 chr1 201422315 201422528 -80771136 - L1M4 LINE L1 -1020 5126 4904 338 343 25 0 chr1 201423082 201423200 -80770464 + MIR SINE MIR 31 149 -67 1671 199 0 0 chr1 201423200 201423486 -80770178 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr1 201423833 201423866 -80769798 + AT_rich Low_complexity Low_complexity 1 33 0 200 362 117 27 chr1 201424488 201424676 -80768988 + L2 LINE L2 2554 2758 -556 394 230 0 0 chr1 201424678 201424752 -80768912 + MLT1L LTR MaLR 6 79 -536 2320 99 0 3 chr1 201424788 201425091 -80768573 + AluSx SINE Alu 1 302 -10 2172 106 0 13 chr1 201425092 201425394 -80768270 + AluSg SINE Alu 1 298 -12 805 170 0 15 chr1 201425642 201425777 -80767887 - FLAM_C SINE Alu 0 133 1 1916 106 55 38 chr1 201425788 201426081 -80767583 - AluSq SINE Alu -15 298 1 185 290 26 129 chr1 201426093 201426286 -80767378 + L2 LINE L2 2246 2418 -896 3642 77 57 2 chr1 201426287 201426778 -80766886 - MER41A LTR ERV1 0 554 37 2091 97 18 0 chr1 201426926 201427225 -80766439 - AluSq SINE Alu 0 304 1 2458 79 0 25 chr1 201427978 201428295 -80765369 + AluY SINE Alu 1 309 -2 491 270 139 33 chr1 201428635 201428850 -80764814 - MIR SINE MIR -13 249 12 201 375 54 27 chr1 201428976 201429088 -80764576 + L2 LINE L2 3137 3251 -21 1660 142 8 4 chr1 201429138 201429391 -80764273 + MER47A DNA MER2_type 2 255 -111 904 217 0 0 chr1 201429411 201429577 -80764087 + FRAM SINE Alu 1 166 0 2257 75 14 0 chr1 201429654 201429957 -80763707 + AluY SINE Alu 1 307 0 231 114 0 0 chr1 201431694 201431729 -80761935 + (A)n Simple_repeat Simple_repeat 1 35 0 625 328 122 17 chr1 201431855 201432215 -80761449 + L1MEd LINE L1 278 675 -5444 1152 83 0 0 chr1 201432236 201432380 -80761284 + AluSg/x SINE Alu 162 305 -5 453 262 63 52 chr1 201432553 201432572 -80761092 + L1MEd LINE L1 843 860 -5259 1919 158 7 10 chr1 201432572 201432882 -80760782 + AluJo SINE Alu 1 309 -3 453 262 63 52 chr1 201432882 201433114 -80760550 + L1MEd LINE L1 860 1097 -5022 579 210 0 0 chr1 201433292 201433392 -80760272 + FLAM_C SINE Alu 7 106 -37 2394 74 7 0 chr1 201434175 201434472 -80759192 + AluSp SINE Alu 1 299 -14 620 179 123 0 chr1 201434690 201434796 -80758868 - FLAM_A SINE Alu -16 126 8 2442 70 7 0 chr1 201435415 201435715 -80757949 - AluY SINE Alu -9 302 1 1933 158 40 21 chr1 201436497 201436877 -80756787 + L1MB7 LINE L1 5462 5848 -336 775 182 7 21 chr1 201436878 201437021 -80756643 + FAM SINE Alu 34 174 -11 1342 173 103 0 chr1 201437025 201437297 -80756367 + L1MB7 LINE L1 5860 6159 -25 1637 162 38 0 chr1 201437321 201437586 -80756078 + AluSx SINE Alu 1 275 -37 287 286 44 0 chr1 201437596 201437687 -80755977 + GA-rich Low_complexity Low_complexity 6 100 0 2031 161 7 0 chr1 201437687 201437997 -80755667 + AluSq SINE Alu 1 312 -1 318 91 0 0 chr1 201438011 201438055 -80755609 + Alu SINE Alu 1 44 -264 383 328 158 27 chr1 201438578 201438913 -80754751 + L2 LINE L2 2379 2757 -557 858 230 36 25 chr1 201438931 201438983 -80754681 + AluJb SINE Alu 84 134 -178 2151 105 3 3 chr1 201438983 201439298 -80754366 + AluSp SINE Alu 1 315 0 858 230 36 25 chr1 201439298 201439440 -80754224 + AluJb SINE Alu 134 281 -31 959 189 0 6 chr1 201439811 201439991 -80753673 + FRAM SINE Alu 1 176 0 303 300 20 10 chr1 201439995 201440095 -80753569 - MIR SINE MIR -7 255 155 2037 103 3 27 chr1 201440096 201440397 -80753267 - AluSg SINE Alu -16 294 1 2288 82 0 3 chr1 201440397 201440679 -80752985 - AluSx SINE Alu -22 290 10 2423 82 0 16 chr1 201440686 201441002 -80752662 - AluSx SINE Alu -1 311 1 562 292 183 45 chr1 201441272 201441559 -80752105 + L2 LINE L2 2395 2641 -672 2019 114 3 13 chr1 201441559 201441857 -80751807 + AluJb SINE Alu 1 295 -17 562 292 183 45 chr1 201441857 201442162 -80751502 + L2 LINE L2 2641 3065 -248 1338 174 7 57 chr1 201442246 201442423 -80751241 - AluJb SINE Alu -19 293 135 246 62 0 0 chr1 201442423 201442455 -80751209 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1338 174 7 57 chr1 201442455 201442575 -80751089 - AluJb SINE Alu -177 135 11 323 264 200 8 chr1 201442575 201442700 -80750964 + L2 LINE L2 3165 3313 0 2215 90 13 19 chr1 201443314 201443624 -80750040 - AluSq SINE Alu -5 308 1 216 244 11 67 chr1 201497575 201497665 -80695999 + MER5A DNA MER1_type 86 170 -19 625 275 80 15 chr1 201499979 201500179 -80693485 + MIR SINE MIR 50 262 0 351 341 39 38 chr1 201500370 201500581 -80693083 - MIR3 SINE MIR -49 213 3 22 0 0 0 chr1 201501226 201501248 -80692416 + AT_rich Low_complexity Low_complexity 1 22 0 186 311 44 22 chr1 201502088 201502178 -80691486 + L2 LINE L2 2230 2321 -993 2890 210 66 9 chr1 201502378 201503165 -80690499 - L1ME1 LINE L1 -16 6150 5319 879 241 94 22 chr1 201503286 201503503 -80690161 - L1ME1 LINE L1 -797 5349 5149 2320 110 7 0 chr1 201503503 201503813 -80689851 - AluSx SINE Alu 0 312 1 879 241 94 22 chr1 201503813 201503997 -80689667 - L1ME1 LINE L1 -997 5149 4919 3167 220 75 46 chr1 201504024 201504140 -80689524 - L1ME1 LINE L1 -1300 4846 4735 1918 148 51 6 chr1 201504140 201504472 -80689192 - MER7A DNA MER2_type -1 345 1 3167 220 75 46 chr1 201504472 201505630 -80688034 - L1ME1 LINE L1 -1411 4735 3535 1330 141 88 4 chr1 201505781 201506043 -80687621 + Tigger3b DNA MER2_type 181 464 -767 * 2579 114 78 5 chr1 201506041 201506463 -80687201 + Tigger3b DNA MER2_type 780 1232 0 1647 198 137 31 chr1 201506466 201507137 -80686527 - L1ME1 LINE L1 -2931 3215 2474 5316 177 9 6 chr1 201507160 201507710 -80685954 - L1PB1 LINE L1 0 6867 6321 2054 122 3 3 chr1 201507710 201507996 -80685668 - AluSx SINE Alu -26 286 1 5316 177 9 6 chr1 201507996 201511313 -80682351 - L1PB1 LINE L1 -546 6321 2813 262 122 41 0 chr1 201511333 201511382 -80682282 - L1PB1 LINE L1 -5445 1418 1368 4201 184 44 21 chr1 201511386 201513113 -80680551 - L1MC1 LINE L1 -205 6128 4362 2472 238 27 53 chr1 201513250 201513457 -80680207 + L1ME1 LINE L1 5285 5496 -670 2211 110 0 0 chr1 201513457 201513747 -80679917 + AluSx SINE Alu 1 290 -22 2472 238 27 53 chr1 201513747 201513853 -80679811 + L1ME1 LINE L1 5496 5603 -563 1588 133 8 0 chr1 201513853 201514117 -80679547 - L1MA4 LINE L1 -11 6289 6024 2472 238 27 53 chr1 201514117 201514699 -80678965 + L1ME1 LINE L1 5603 6157 -9 1936 159 0 3 chr1 201515334 201515623 -80678041 + AluSx SINE Alu 1 288 -24 474 120 0 27 chr1 201516390 201516465 -80677199 - AluJ/FRAM SINE Alu -23 289 217 285 56 0 0 chr1 201516568 201516604 -80677060 - Alu SINE Alu -255 47 12 2383 207 46 23 chr1 201516662 201517232 -80676432 + MER119 DNA MER1_type 1 583 0 321 355 140 22 chr1 201517365 201517593 -80676071 + L2 LINE L2 3018 3272 0 2508 62 3 0 chr1 201517615 201517922 -80675742 + AluY SINE Alu 1 308 -3 26 0 0 0 chr1 201518360 201518386 -80675278 + AT_rich Low_complexity Low_complexity 1 26 0 354 263 107 10 chr1 201518419 201518624 -80675040 + Charlie7 DNA MER1_type 1498 1722 -890 2236 105 0 0 chr1 201518627 201519086 -80674578 + AluSg SINE Alu 2 460 0 923 137 0 0 chr1 201519093 201519217 -80674447 + AluJb SINE Alu 1 124 -188 1079 219 80 31 chr1 201519249 201519637 -80674027 + Charlie7 DNA MER1_type 1722 2128 -484 1809 176 10 3 chr1 201519637 201519943 -80673721 - AluJo SINE Alu -4 308 1 250 194 14 42 chr1 201520194 201520266 -80673398 + Charlie7 DNA MER1_type 2218 2287 -325 242 298 144 11 chr1 201520338 201520519 -80673145 + Charlie7 DNA MER1_type 2408 2612 0 10113 208 30 25 chr1 201520624 201521670 -80671994 - L1PA13 LINE L1 -3789 3008 1969 2448 89 0 3 chr1 201521670 201521974 -80671690 - AluSq SINE Alu -8 305 3 10113 208 30 25 chr1 201521974 201523814 -80669850 - L1PA13 LINE L1 -4828 1969 100 28251 96 6 22 chr1 201523916 201528155 -80665509 - L1P LINE L1 -1974 4172 2 817 138 7 43 chr1 201528186 201528324 -80665340 - FLAM_C SINE Alu 0 133 1 259 219 116 9 chr1 201528397 201528593 -80665071 - L1ME LINE L1 -5179 904 686 1236 164 18 1 chr1 201529242 201529542 -80664122 - MER2 DNA MER2_type -2 343 1 194 254 0 45 chr1 201530281 201530348 -80663316 - L2 LINE L2 -6 3266 3203 3247 176 26 60 chr1 201530704 201530951 -80662713 - L1MB7 LINE L1 -13 6171 5917 2339 104 0 0 chr1 201530951 201531248 -80662416 - AluSq SINE Alu -16 297 1 3247 176 26 60 chr1 201531248 201531856 -80661808 - L1MB7 LINE L1 -267 5917 5345 4378 218 73 9 chr1 201531875 201533144 -80660520 - L1MB7 LINE L1 -1024 5122 3772 7297 160 26 25 chr1 201533256 201534716 -80658948 - L1P LINE L1 -4673 1473 13 378 216 128 10 chr1 201534986 201535088 -80658576 + L2 LINE L2 3193 3306 -7 501 151 0 0 chr1 201535254 201535340 -80658324 + CT-rich Low_complexity Low_complexity 3 88 0 1729 180 20 0 chr1 201535350 201535650 -80658014 - AluJo SINE Alu -6 306 1 237 265 94 0 chr1 201535892 201536009 -80657655 - MER103 DNA DNA -2 164 37 471 272 206 11 chr1 201536780 201536964 -80656700 + MIR SINE MIR 37 256 -6 1701 186 24 3 chr1 201537158 201537448 -80656216 - AluJb SINE Alu -16 296 1 329 335 54 24 chr1 201537466 201538287 -80655377 + L1M4 LINE L1 3531 4375 -1771 644 128 0 0 chr1 201538372 201538458 -80655206 - FRAM/FAM SINE Alu -92 84 1 441 134 34 25 chr1 201538828 201538947 -80654717 + CT-rich Low_complexity Low_complexity 2 121 0 741 139 0 48 chr1 201538949 201539202 -80654462 + (TTTC)n Simple_repeat Simple_repeat 1 240 0 15034 47 4 0 chr1 201539209 201541856 -80651808 - L1PA5 LINE L1 -1 6153 3507 241 284 42 0 chr1 201542006 201542101 -80651563 - L1M4 LINE L1 -1313 4833 4735 6186 160 14 7 chr1 201542113 201544075 -80649589 - L1PA13 LINE L1 0 6163 4187 816 142 24 0 chr1 201544173 201544300 -80649364 - FLAM_A SINE Alu -3 130 1 422 280 133 33 chr1 201544338 201544609 -80649055 - L1M4 LINE L1 -1538 4608 4311 193 73 24 24 chr1 201544613 201544654 -80649010 + (TA)n Simple_repeat Simple_repeat 1 41 0 210 91 0 0 chr1 201544668 201544701 -80648963 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1479 199 15 0 chr1 201544701 201544972 -80648692 - AluJo SINE Alu -27 285 11 666 299 4 4 chr1 201545054 201545295 -80648369 - L1M4 LINE L1 -1870 4276 4036 658 265 96 48 chr1 201545362 201546093 -80647571 - L1MEd LINE L1 -4642 1668 866 548 110 0 0 chr1 201546250 201546341 -80647323 - L1MA8 LINE L1 -2 6289 6199 1453 172 86 18 chr1 201546349 201546687 -80646977 - L1MB7 LINE L1 -5 6179 5819 4195 69 37 2 chr1 201546687 201547253 -80646411 - L1PB1 LINE L1 0 6151 5566 682 318 159 29 chr1 201547289 201547912 -80645752 + L2 LINE L2 2157 2860 -454 361 327 117 63 chr1 201547955 201548255 -80645409 + L2 LINE L2 2955 3270 -2 276 30 0 0 chr1 201548450 201548483 -80645181 + (CATA)n Simple_repeat Simple_repeat 3 35 0 1795 164 21 11 chr1 201548483 201548764 -80644900 - AluJo SINE Alu -26 286 3 753 239 101 5 chr1 201549251 201549469 -80644195 - MIR SINE MIR -1 261 23 840 246 169 69 chr1 201549748 201549934 -80643730 + MER41C LTR ERV1 1 167 -387 3995 96 20 0 chr1 201549934 201550477 -80643187 - MER41A LTR ERV1 0 554 1 840 246 169 69 chr1 201550477 201550794 -80642870 + MER41C LTR ERV1 167 554 0 183 184 0 0 chr1 201550796 201550834 -80642830 + (CTA)n Simple_repeat Simple_repeat 3 40 0 180 0 0 0 chr1 201551613 201551633 -80642031 + (T)n Simple_repeat Simple_repeat 1 20 0 1522 142 0 0 chr1 201551645 201551863 -80641801 - AluSq SINE Alu -95 218 1 2016 185 117 31 chr1 201552314 201552860 -80640804 - LTR49 LTR ERV1 0 595 3 2184 105 0 7 chr1 201553006 201553300 -80640364 - AluSg SINE Alu -18 292 1 2362 153 123 99 chr1 201553828 201554521 -80639143 - LTR8A LTR ERV1 0 727 1 1813 166 7 10 chr1 201555573 201555906 -80637758 + AluJo SINE Alu 1 332 0 297 174 0 0 chr1 201557826 201557895 -80635769 + GA-rich Low_complexity Low_complexity 2 70 0 3010 50 5 0 chr1 201558195 201558573 -80635091 - L1PA6 LINE L1 0 6154 5775 350 258 45 8 chr1 201558673 201558805 -80634859 - L1MEc LINE L1 -5488 908 772 1465 184 56 72 chr1 201558878 201559146 -80634518 + MLT1A2 LTR MaLR 4 266 -108 1914 143 75 0 chr1 201559146 201559481 -80634183 - MER46B DNA MER2_type 0 236 2 1465 184 56 72 chr1 201559481 201559588 -80634076 + MLT1A2 LTR MaLR 266 373 -1 795 306 132 10 chr1 201559593 201560109 -80633555 - L1MEc LINE L1 -5739 657 79 300 229 128 28 chr1 201560256 201560365 -80633299 - HAL1b LINE L1 -898 450 331 1782 142 43 3 chr1 201561023 201561305 -80632359 - AluSg SINE Alu -17 293 1 2247 120 0 3 chr1 201562612 201562913 -80630751 + AluSx SINE Alu 2 301 -11 1470 195 11 51 chr1 201563415 201563769 -80629895 - MLT1A1 LTR MaLR -1 364 25 271 150 100 12 chr1 201564039 201564119 -80629545 - L1ME4a LINE L1 -4 6117 6031 304 241 52 105 chr1 201564120 201564311 -80629353 - L1ME4a LINE L1 -168 5953 5773 392 317 72 4 chr1 201564321 201564583 -80629081 - L1ME4a LINE L1 -330 5791 5512 1881 156 58 0 chr1 201564718 201565077 -80628587 - L1MA8 LINE L1 -5 6286 5907 539 274 0 0 chr1 201565142 201565259 -80628405 + L2 LINE L2 3197 3313 0 22 0 0 0 chr1 201565262 201565284 -80628380 + AT_rich Low_complexity Low_complexity 1 22 0 1067 218 89 0 chr1 201565808 201566079 -80627585 - MER58B DNA MER1_type -2 339 45 400 328 37 0 chr1 201567312 201567446 -80626218 - MIR SINE MIR -28 234 96 235 195 81 23 chr1 201567486 201567573 -80626091 + L1ME4a LINE L1 5967 6058 -63 224 283 22 100 chr1 201567707 201567887 -80625777 + L2 LINE L2 861 1026 -2288 230 278 160 46 chr1 201567913 201568194 -80625470 + L2 LINE L2 1317 1629 -1685 22 35 0 0 chr1 201568665 201568694 -80624970 + AT_rich Low_complexity Low_complexity 1 29 0 272 217 109 22 chr1 201568867 201568959 -80624705 - L1ME LINE L1 -490 5631 5532 269 168 47 0 chr1 201569007 201569078 -80624586 - L1P LINE L1 -753 5398 5325 1584 137 43 36 chr1 201569353 201569630 -80624034 - AluJo SINE Alu -17 295 17 335 314 74 53 chr1 201569637 201569975 -80623689 + L1ME4a LINE L1 5710 6054 -67 21 0 0 0 chr1 201571029 201571050 -80622614 + AT_rich Low_complexity Low_complexity 1 21 0 501 302 126 8 chr1 201571078 201571436 -80622228 + L1ME3 LINE L1 5489 5888 -274 547 216 52 9 chr1 201571569 201571685 -80621979 - MIR SINE MIR -136 126 6 415 149 54 0 chr1 201571797 201571871 -80621793 + MIR SINE MIR 152 229 -33 1545 271 103 29 chr1 201571871 201573226 -80620438 + L1ME LINE L1 384 1831 -4249 449 279 48 57 chr1 201573251 201573353 -80620311 + L1ME LINE L1 3465 3566 -2514 1772 166 22 32 chr1 201573353 201573666 -80619998 - AluJo SINE Alu -2 310 1 449 279 48 57 chr1 201573666 201573792 -80619872 + L1ME LINE L1 3566 3691 -2389 32933 121 33 34 chr1 201573894 201579199 -80614465 - L1P LINE L1 -836 5310 12 23 0 0 0 chr1 201579217 201579240 -80614424 + AT_rich Low_complexity Low_complexity 1 23 0 596 244 68 5 chr1 201579489 201579710 -80613954 + L1ME4a LINE L1 5658 5892 -229 319 231 11 33 chr1 201579730 201579821 -80613843 + L1ME4a LINE L1 5964 6052 -69 2237 115 3 3 chr1 201582129 201582441 -80611223 + AluSx SINE Alu 1 312 0 250 330 127 0 chr1 201582520 201582638 -80611026 - MIR SINE MIR -67 195 63 735 279 124 0 chr1 201585984 201586217 -80607447 - MIR SINE MIR 0 262 1 198 260 40 0 chr1 201589257 201589307 -80604357 - L2 LINE L2 -8 3264 3213 2883 172 24 4 chr1 201590919 201591426 -80602238 + L1MB7 LINE L1 5569 6085 -99 2005 136 0 3 chr1 201591532 201591819 -80601845 - AluSx SINE Alu -26 286 1 2521 165 48 34 chr1 201592346 201592844 -80600820 + MLT1D LTR MaLR 1 505 0 314 293 164 0 chr1 201593421 201593537 -80600127 - L2 LINE L2 0 3272 3138 245 143 119 0 chr1 201593547 201593589 -80600075 + Tigger5 DNA MER2_type 2 48 -2275 338 196 0 103 chr1 201595460 201595557 -80598107 + MER94 DNA DNA 42 128 -6 180 333 250 0 chr1 201596326 201596422 -80597242 + L2 LINE L2 3145 3264 -8 2274 101 0 3 chr1 201597370 201597666 -80595998 - AluSq SINE Alu -18 295 1 573 264 155 25 chr1 201597894 201598171 -80595493 + L1ME LINE L1 3511 3823 -2323 405 0 0 0 chr1 201598287 201598332 -80595332 + (TG)n Simple_repeat Simple_repeat 2 46 0 449 191 131 55 chr1 201598355 201598554 -80595110 + L1ME LINE L1 4354 4567 -1579 972 214 15 5 chr1 201598572 201598624 -80595040 - MER3 DNA MER1_type -5 204 154 2032 141 3 0 chr1 201598624 201598921 -80594743 - AluSx SINE Alu -14 298 1 972 214 15 5 chr1 201598921 201599069 -80594595 - MER3 DNA MER1_type -55 154 2 1628 265 65 47 chr1 201599079 201599379 -80594285 + L1ME LINE L1 4592 4885 -1285 1998 115 7 4 chr1 201599379 201599689 -80593975 + AluY SINE Alu 1 311 0 1628 265 65 47 chr1 201599689 201600232 -80593432 + L1ME LINE L1 4885 5417 -753 2181 127 3 0 chr1 201600232 201600539 -80593125 + AluSx SINE Alu 1 308 -4 1628 265 65 47 chr1 201600539 201600763 -80592901 + L1ME LINE L1 5417 5693 -477 2354 84 3 0 chr1 201600763 201601059 -80592605 + AluSp SINE Alu 1 297 -16 1628 265 65 47 chr1 201601059 201601155 -80592509 + L1ME LINE L1 5693 5786 -384 28 0 0 0 chr1 201601478 201601506 -80592158 + AT_rich Low_complexity Low_complexity 1 28 0 2379 59 0 7 chr1 201601506 201601796 -80591868 - L1PA4 LINE L1 -3 6152 5865 6633 181 49 17 chr1 201602074 201604146 -80589518 - L1PA16 LINE L1 -245 5933 3897 3070 227 85 13 chr1 201604153 201605087 -80588577 + L1M4 LINE L1 2387 3387 -2759 2163 122 20 0 chr1 201605997 201606300 -80587364 - AluSq SINE Alu -4 309 1 12849 76 8 5 chr1 201607787 201609381 -80584283 - L1P LINE L1 -3034 3112 1512 3788 113 2 6 chr1 201609381 201609894 -80583770 - MER9 LTR ERVK 0 511 1 12849 76 8 5 chr1 201609894 201610014 -80583650 - L1P LINE L1 -4634 1512 1394 20746 41 50 3 chr1 201610114 201612726 -80580938 - L1P LINE L1 -2892 3254 519 2208 58 0 0 chr1 201612826 201613102 -80580562 - L1P LINE L1 -1094 5052 4777 8344 12 6 0 chr1 201613102 201614726 -80578938 + L1PA2 LINE L1 4527 6155 0 28 48 0 0 chr1 201614731 201614773 -80578891 + AT_rich Low_complexity Low_complexity 1 42 0 12389 119 19 50 chr1 201615011 201615411 -80578253 + L1P3 LINE L1 10 421 -6040 253 0 54 0 chr1 201615411 201615448 -80578216 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 12389 119 19 50 chr1 201615448 201617571 -80576093 + L1P3 LINE L1 421 2544 -3917 1720 157 94 28 chr1 201617571 201617997 -80575667 - pTR5 LTR ERV1 -1177 1261 808 17096 63 10 1 chr1 201618463 201621350 -80572314 - L1PA5 LINE L1 -8 6146 3241 3022 213 32 14 chr1 201622039 201622777 -80570887 + L1M4 LINE L1 2215 2966 -3180 201 289 0 0 chr1 201622785 201622830 -80570834 + G-rich Low_complexity Low_complexity 3 47 0 1155 253 35 23 chr1 201622891 201623235 -80570429 + LTR16B LTR ERVL 104 451 -13 323 273 108 36 chr1 201623428 201623622 -80570042 - L2 LINE L2 -159 3113 2906 1923 164 0 10 chr1 201623972 201624277 -80569387 + AluJo SINE Alu 1 302 -10 390 319 38 38 chr1 201624287 201624447 -80569217 + MIR SINE MIR 9 168 -94 3388 48 10 0 chr1 201624558 201624976 -80568688 - L1PA6 LINE L1 -4 6150 5729 955 103 0 0 chr1 201624976 201625121 -80568543 - L1PB1 LINE L1 -146 6005 5861 1076 92 0 0 chr1 201625121 201625262 -80568402 + AluSg/x SINE Alu 157 297 -15 420 200 0 0 chr1 201625265 201625345 -80568319 - L1PB1 LINE L1 -288 5863 5784 287 185 25 50 chr1 201625346 201625465 -80568199 + (TA)n Simple_repeat Simple_repeat 2 117 0 282 56 0 0 chr1 201625475 201625511 -80568153 + (TG)n Simple_repeat Simple_repeat 2 37 0 2382 106 5 12 chr1 201625511 201625918 -80567746 - L1PB1 LINE L1 -363 5788 5385 437 242 200 8 chr1 201626214 201626400 -80567264 - MIR SINE MIR -32 230 8 303 289 90 94 chr1 201627261 201627538 -80566126 - L1M2 LINE L1 -5734 1115 840 380 183 25 100 chr1 201627548 201627668 -80565996 + U5 snRNA snRNA 4 114 -2 180 111 0 0 chr1 201627674 201627701 -80565963 + (A)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr1 201628327 201628354 -80565310 + AT_rich Low_complexity Low_complexity 1 27 0 196 283 71 88 chr1 201629712 201629952 -80563712 - L2 LINE L2 -663 2651 2416 435 324 70 62 chr1 201630092 201630254 -80563410 - L2 LINE L2 -4 3268 3109 1000 152 25 114 chr1 201630254 201630491 -80563173 - MER20 DNA MER1_type -3 216 1 435 324 70 62 chr1 201630491 201630873 -80562791 - L2 LINE L2 -163 3109 2664 2499 75 0 22 chr1 201630873 201631191 -80562473 + AluY SINE Alu 1 311 0 435 324 70 62 chr1 201631191 201631257 -80562407 - L2 LINE L2 -608 2664 2600 344 360 51 37 chr1 201631279 201631493 -80562171 - L2 LINE L2 -838 2476 2260 2326 79 3 3 chr1 201631681 201631973 -80561691 + AluSg1 SINE Alu 1 292 -17 215 232 54 0 chr1 201632183 201632239 -80561425 + GA-rich Low_complexity Low_complexity 2 60 0 23 0 0 0 chr1 201632430 201632453 -80561211 + AT_rich Low_complexity Low_complexity 1 23 0 2210 110 0 3 chr1 201632747 201633046 -80560618 + AluY SINE Alu 1 298 -13 841 118 0 8 chr1 201633080 201633199 -80560465 + FLAM_C SINE Alu 1 118 -15 244 111 37 19 chr1 201633202 201633256 -80560408 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 877 161 54 30 chr1 201633671 201633839 -80559825 - MER5A DNA MER1_type -14 175 4 645 265 85 0 chr1 201633890 201634101 -80559563 + L2 LINE L2 3084 3312 -1 244 315 171 44 chr1 201634108 201634193 -80559471 - L2 LINE L2 -1076 2238 2165 2444 80 0 0 chr1 201634193 201634494 -80559170 + AluSq SINE Alu 1 301 -12 244 315 171 44 chr1 201634494 201634887 -80558777 - L2 LINE L2 -1149 2165 1699 771 179 31 122 chr1 201635584 201635813 -80557851 + AluJo SINE Alu 1 208 -104 3482 134 36 8 chr1 201635915 201636547 -80557117 + L1M1 LINE L1 1912 2561 -5004 7848 14 1 0 chr1 201636588 201637539 -80556125 + L1PA3 LINE L1 5204 6155 0 374 96 96 0 chr1 201637639 201637712 -80555952 + MER2 DNA MER2_type 130 209 -136 304 377 7 26 chr1 201637938 201638092 -80555572 + L2 LINE L2 3122 3272 0 1401 186 7 0 chr1 201638180 201638454 -80555210 + MER63 DNA MER1_type 786 1061 0 270 302 94 9 chr1 201638458 201638564 -80555100 - L2 LINE L2 -519 2795 2681 384 265 108 36 chr1 201638789 201638955 -80554709 + MIR SINE MIR 74 251 -11 1970 144 17 0 chr1 201640610 201640908 -80552756 + AluSx SINE Alu 1 303 -9 26 64 0 0 chr1 201641161 201641208 -80552456 + AT_rich Low_complexity Low_complexity 1 47 0 352 293 68 20 chr1 201641237 201641384 -80552280 - MIR SINE MIR -60 202 49 191 317 189 43 chr1 201641399 201641563 -80552101 - MIR SINE MIR -32 230 43 266 293 9 28 chr1 201642219 201642325 -80551339 + MLT1K LTR MaLR 410 513 -75 23 33 0 0 chr1 201642380 201642410 -80551254 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 0 chr1 201642535 201642572 -80551092 + AT_rich Low_complexity Low_complexity 1 37 0 251 277 50 50 chr1 201642664 201642783 -80550881 - L1ME3A LINE L1 -93 6077 5959 475 278 53 84 chr1 201642839 201643253 -80550411 - L1ME3A LINE L1 -214 5956 5556 24 32 0 0 chr1 201643479 201643510 -80550154 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 201644698 201644720 -80548944 + AT_rich Low_complexity Low_complexity 1 22 0 2229 100 3 16 chr1 201644779 201645089 -80548575 + AluSc SINE Alu 1 306 -3 201 275 121 74 chr1 201645488 201645637 -80548027 + L2 LINE L2 1846 2001 -1313 311 352 95 67 chr1 201645726 201645880 -80547784 + L2 LINE L2 2216 2364 -908 1892 135 11 0 chr1 201645880 201646154 -80547510 + AluSx SINE Alu 4 280 -32 288 0 0 0 chr1 201646154 201646186 -80547478 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2208 75 4 4 chr1 201646186 201646494 -80547170 + AluY SINE Alu 1 308 0 311 352 95 67 chr1 201646494 201646729 -80546935 + L2 LINE L2 2364 2591 -681 1759 191 0 13 chr1 201646729 201647043 -80546621 - AluJb SINE Alu -2 310 1 311 352 95 67 chr1 201647043 201647501 -80546163 + L2 LINE L2 2591 3083 -189 334 339 65 8 chr1 201647633 201647757 -80545907 + L2 LINE L2 3137 3267 -5 180 0 0 0 chr1 201648659 201648679 -80544985 + (A)n Simple_repeat Simple_repeat 1 20 0 511 194 54 86 chr1 201649160 201649346 -80544318 - MER58C DNA MER1_type -1 214 35 237 178 0 0 chr1 201649393 201649438 -80544226 + (TG)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chr1 201649440 201649466 -80544198 + (GA)n Simple_repeat Simple_repeat 2 27 0 1903 136 4 0 chr1 201649466 201649739 -80543925 - AluSq SINE Alu -39 274 1 2548 218 73 54 chr1 201650034 201650829 -80542835 - L1ME2 LINE L1 -9 6155 5376 1576 139 44 11 chr1 201650829 201651102 -80542562 - AluJb SINE Alu -8 304 23 2548 218 73 54 chr1 201651102 201651189 -80542475 - L1ME2 LINE L1 -788 5376 5292 1963 183 6 11 chr1 201651189 201651555 -80542109 - MLT1A1 LTR MaLR 0 365 2 2548 218 73 54 chr1 201651555 201651813 -80541851 - L1ME2 LINE L1 -872 5292 4985 700 221 55 17 chr1 201651814 201652049 -80541615 - L1ME2 LINE L1 -1405 4741 4498 2412 233 103 42 chr1 201652049 201652402 -80541262 - L1ME2 LINE L1 -1897 4249 3919 4793 86 100 21 chr1 201652402 201653125 -80540539 + LTR17 LTR ERV1 1 780 0 2412 233 103 42 chr1 201653125 201653951 -80539713 - L1ME2 LINE L1 -2227 3919 2998 1370 186 115 0 chr1 201654429 201654698 -80538966 - AluJb SINE Alu -2 300 1 7632 26 1 3 chr1 201656059 201657653 -80536011 + L1PA3 LINE L1 4564 6155 0 180 103 0 0 chr1 201657653 201657676 -80535988 + (A)n Simple_repeat Simple_repeat 1 23 0 232 146 0 0 chr1 201657717 201657758 -80535906 - L1ME1 LINE L1 -5 6161 6121 334 200 0 0 chr1 201658064 201658119 -80535545 - L1PA13 LINE L1 -6732 55 1 301 154 19 0 chr1 201658441 201658493 -80535171 - L2 LINE L2 -4 3268 3216 2832 249 61 74 chr1 201659235 201660240 -80533424 + L1M4b LINE L1 11 1028 -5827 6681 33 0 1 chr1 201660240 201661029 -80532635 + L1PA5 LINE L1 5362 6149 -5 2832 249 61 74 chr1 201661029 201661483 -80532181 + L1M4b LINE L1 1028 1487 -5368 2235 121 36 36 chr1 201661483 201661847 -80531817 + THE1B LTR MaLR 1 364 0 10962 104 16 16 chr1 201661847 201662215 -80531449 + THE1B-int LTR MaLR 1 368 -1212 2197 103 0 0 chr1 201662215 201662522 -80531142 - AluY SINE Alu 0 307 1 2318 106 7 0 chr1 201662522 201662823 -80530841 - AluSp SINE Alu -10 303 1 10962 104 16 16 chr1 201662823 201662889 -80530775 + THE1B-int LTR MaLR 367 432 -1148 2042 142 3 10 chr1 201662889 201663200 -80530464 - AluSx SINE Alu -3 309 1 10962 104 16 16 chr1 201663200 201664342 -80529322 + THE1B-int LTR MaLR 431 1580 0 2075 141 33 43 chr1 201664342 201664710 -80528954 + THE1B LTR MaLR 1 364 0 2832 249 61 74 chr1 201664710 201665031 -80528633 + L1M4b LINE L1 1484 1816 -5039 648 261 23 9 chr1 201665187 201665402 -80528262 + L1MA9 LINE L1 6057 6274 -38 38 39 0 0 chr1 201665402 201665454 -80528210 + AT_rich Low_complexity Low_complexity 1 52 0 23960 91 12 3 chr1 201665461 201669828 -80523836 - L1PA7 LINE L1 -13 6456 2048 21242 34 1 0 chr1 201669821 201672530 -80521134 - L1P LINE L1 -1769 4377 1667 * 5270 88 10 0 chr1 201672530 201673296 -80520368 - L1PA7 LINE L1 -5009 1452 679 345 24 0 0 chr1 201876666 201876708 -80316956 + (CA)n Simple_repeat Simple_repeat 1 42 0 249 284 147 0 chr1 201877457 201877559 -80316105 + MIR SINE MIR 30 146 -62 234 0 0 0 chr1 201879175 201879201 -80314463 + (TG)n Simple_repeat Simple_repeat 1 26 0 240 221 273 0 chr1 201881148 201881225 -80312439 - L2 LINE L2 -5 3308 3211 429 302 39 17 chr1 201882305 201882494 -80311170 + MIR SINE MIR 11 203 -59 2324 104 0 0 chr1 201882977 201883274 -80310390 - AluSx SINE Alu -14 298 2 211 291 0 0 chr1 201883284 201883339 -80310325 + CT-rich Low_complexity Low_complexity 3 57 0 189 274 57 57 chr1 201883537 201883643 -80310021 - MIR SINE MIR -129 133 28 538 253 33 82 chr1 201884031 201884276 -80309388 - MIR SINE MIR -14 248 16 838 232 113 39 chr1 201885099 201885546 -80308118 + MER115 DNA AcHobo 142 683 -10 206 271 34 0 chr1 201885546 201885605 -80308059 - L3 LINE CR1 -6 1571 1511 629 186 69 21 chr1 201885792 201885937 -80307727 + MIR SINE MIR 2 153 -109 1381 185 76 4 chr1 201885943 201886076 -80307588 - AluJo SINE Alu -43 269 147 396 0 0 0 chr1 201886076 201886120 -80307544 + (TG)n Simple_repeat Simple_repeat 1 44 0 1381 185 76 4 chr1 201886120 201886235 -80307429 - AluJo SINE Alu -165 147 3 369 236 75 34 chr1 201886380 201886515 -80307149 + MIR3 SINE MIR 43 173 -40 237 333 154 6 chr1 201886551 201886713 -80306951 - L2 LINE L2 0 3313 3128 409 248 36 108 chr1 201886832 201887054 -80306610 - L3 LINE CR1 -254 1323 1118 2434 92 7 0 chr1 201887703 201888006 -80305658 - AluSq SINE Alu -8 305 1 241 358 98 0 chr1 201888304 201888427 -80305237 + MER5A DNA MER1_type 54 188 -1 246 242 84 42 chr1 201888509 201888604 -80305060 + MIR SINE MIR 48 146 -62 3318 108 4 2 chr1 201888608 201889101 -80304563 + L1PA13 LINE L1 5659 6152 -11 2049 90 3 84 chr1 201889373 201889695 -80303969 + AluSq SINE Alu 1 296 -17 1840 142 71 0 chr1 201890957 201891238 -80302426 + AluSx SINE Alu 1 301 -11 1629 220 174 12 chr1 201892416 201892926 -80300738 - MLT1E LTR MaLR 0 593 1 1170 145 0 0 chr1 201893085 201893251 -80300413 + AluJb SINE Alu 126 291 -21 305 357 37 67 chr1 201894192 201894492 -80299172 - L2 LINE L2 -11 3261 2971 209 351 188 5 chr1 201894604 201894812 -80298852 + L2 LINE L2 2868 3113 -159 2032 113 0 31 chr1 201894898 201895189 -80298475 + AluSx SINE Alu 13 294 -18 387 254 187 8 chr1 201895580 201895714 -80297950 - MER5A DNA MER1_type -6 183 26 529 167 49 0 chr1 201896592 201896694 -80296970 - MER94 DNA DNA -27 107 1 216 315 85 54 chr1 201896930 201897060 -80296604 - L2 LINE L2 -5 3267 3134 248 348 134 0 chr1 201897149 201897261 -80296403 - MIR SINE MIR -128 134 8 391 152 29 2 chr1 201897453 201897522 -80296142 + AluSp SINE Alu 126 189 -114 1408 228 93 11 chr1 201897590 201897954 -80295710 + MSTD LTR MaLR 3 396 0 198 0 0 0 chr1 201898236 201898258 -80295406 + (TTA)n Simple_repeat Simple_repeat 2 23 0 279 0 0 0 chr1 201898410 201898441 -80295223 + (CA)n Simple_repeat Simple_repeat 2 32 0 2204 115 0 16 chr1 201899443 201899747 -80293917 + AluSq SINE Alu 2 300 -13 1175 147 28 36 chr1 201899756 201900007 -80293657 + L1MA8 LINE L1 6040 6288 -3 2047 136 31 0 chr1 201900225 201900512 -80293152 + AluSq SINE Alu 1 296 -17 189 324 73 15 chr1 201901801 201901869 -80291795 + MIR SINE MIR 76 147 -61 266 273 169 0 chr1 201902329 201902406 -80291258 - L2 LINE L2 -1 3271 3182 224 290 112 9 chr1 201902902 201903009 -80290655 + L2 LINE L2 3155 3272 0 343 236 143 37 chr1 201903831 201903992 -80289672 - MIR SINE MIR -76 186 9 457 306 77 41 chr1 201904595 201905209 -80288455 - L1ME3A LINE L1 -266 5904 5260 654 207 0 0 chr1 201905651 201905830 -80287834 + G-rich Low_complexity Low_complexity 1 179 0 869 255 7 3 chr1 201905955 201906241 -80287423 + AluSx SINE Alu 5 291 -11 1431 255 50 45 chr1 201906354 201906488 -80287176 - MER87 LTR ERV1 0 541 409 2198 98 0 36 chr1 201906488 201906795 -80286869 - AluSg SINE Alu -14 296 1 1431 255 50 45 chr1 201906795 201907198 -80286466 - MER87 LTR ERV1 -132 409 1 2138 115 0 3 chr1 201907628 201907914 -80285750 - AluSx SINE Alu -27 285 1 2056 147 34 0 chr1 201908559 201908913 -80284751 - MER47A DNA MER2_type 0 366 1 1398 115 10 24 chr1 201909612 201909853 -80283811 - AluSx SINE Alu 0 310 85 382 232 0 50 chr1 201909861 201909960 -80283704 - LTR8 LTR ERV1 -573 118 25 554 107 0 24 chr1 201910097 201910181 -80283483 - AluSx SINE Alu -230 83 2 1673 154 31 0 chr1 201910268 201910527 -80283137 - AluJo SINE Alu -9 303 37 594 89 0 0 chr1 201912153 201912243 -80281421 - AluSg/x SINE Alu -1 308 219 318 89 0 0 chr1 201912243 201912288 -80281376 - AluJo SINE Alu -257 45 1 236 182 0 0 chr1 201912288 201912332 -80281332 - L1MB4 LINE L1 -119 6061 6018 3115 153 29 52 chr1 201913561 201914057 -80279607 - L1MB3 LINE L1 -2 6181 5704 2333 108 0 0 chr1 201914057 201914364 -80279300 + AluSq SINE Alu 1 307 -6 3115 153 29 52 chr1 201914364 201914560 -80279104 - L1MB3 LINE L1 -479 5704 5505 318 252 130 9 chr1 201915907 201916022 -80277642 + MIR SINE MIR 16 144 -64 319 258 76 45 chr1 201916453 201916585 -80277079 - L2 LINE L2 -5 3308 3173 391 167 39 0 chr1 201916899 201916977 -80276687 - LTR45 LTR ERV1 0 525 445 2167 108 7 3 chr1 201916977 201917272 -80276392 + AluSg SINE Alu 1 296 -14 1187 298 21 14 chr1 201917413 201917833 -80275831 - LTR45 LTR ERV1 -102 423 1 262 296 14 0 chr1 201917982 201918053 -80275611 - L3 LINE CR1 -2 1575 1504 1254 170 0 66 chr1 201919356 201919405 -80274259 + AluJb SINE Alu 85 136 -176 2253 107 7 3 chr1 201919405 201919705 -80273959 - AluSq SINE Alu -12 301 1 1254 170 0 66 chr1 201919705 201919896 -80273768 + AluJb SINE Alu 136 309 -3 368 309 140 6 chr1 201921052 201921408 -80272256 + L1M4 LINE L1 4521 4924 -1222 2291 114 3 0 chr1 201921911 201922218 -80271446 + AluY SINE Alu 3 310 -1 672 169 34 0 chr1 201922221 201922339 -80271325 + FLAM_A SINE Alu 5 126 -7 4474 115 87 107 chr1 201922761 201924179 -80269485 - pTR5 LTR ERV1 0 2438 741 2151 106 10 3 chr1 201924291 201924583 -80269081 - AluSg SINE Alu -16 294 1 1919 151 0 7 chr1 201924583 201924875 -80268789 - AluJb SINE Alu -22 290 1 2603 43 0 3 chr1 201925713 201926014 -80267650 + AluY SINE Alu 1 300 -11 2009 132 0 3 chr1 201926025 201926312 -80267352 + AluSx SINE Alu 1 286 -26 284 253 27 13 chr1 201926874 201926949 -80266715 + MER117 DNA MER1_type 1 76 -121 1925 55 0 4 chr1 201927332 201927599 -80266065 + L1PA7 LINE L1 5899 6164 0 764 163 157 27 chr1 201928165 201928312 -80265352 + AluJb SINE Alu 132 297 -15 2207 91 7 7 chr1 201928600 201928896 -80264768 + AluSq SINE Alu 1 296 -17 2446 71 0 16 chr1 201929443 201929751 -80263913 + AluY SINE Alu 1 303 -8 1566 162 0 0 chr1 201929904 201930133 -80263531 + AluSx SINE Alu 1 229 -83 217 322 59 51 chr1 201930557 201930733 -80262931 - MIR SINE MIR -45 217 42 327 200 12 59 chr1 201932469 201932554 -80261110 + Tigger5 DNA MER2_type 2243 2323 0 1460 230 132 26 chr1 201933308 201933800 -80259864 + L1MB8 LINE L1 5632 6175 -3 2019 131 20 10 chr1 201934021 201934326 -80259338 - AluSx SINE Alu -4 308 1 263 290 43 54 chr1 201934848 201934941 -80258723 - L2 LINE L2 -25 3288 3197 3969 128 36 25 chr1 201934993 201935634 -80258030 + MER51A LTR ERV1 1 640 0 1098 251 36 90 chr1 201936974 201936985 -80256679 + MLT1J LTR MaLR 46 56 -455 2485 130 63 52 chr1 201936985 201937430 -80256234 - L1MD2 LINE L1 -17 6342 5893 1098 251 36 90 chr1 201937430 201937861 -80255803 + MLT1J LTR MaLR 56 464 -47 860 153 172 0 chr1 201937946 201938103 -80255561 - MER5A DNA MER1_type 0 189 6 832 303 76 28 chr1 201939736 201940330 -80253334 - L2 LINE L2 -177 3095 2458 2500 65 7 0 chr1 201940334 201940641 -80253023 + AluY SINE Alu 1 309 -2 1697 160 0 26 chr1 201941108 201941403 -80252261 + AluJo SINE Alu 23 310 0 554 135 306 56 chr1 201941403 201941635 -80252029 - L1MC5 LINE L1 -51 7910 7609 2388 92 0 0 chr1 201941635 201941928 -80251736 + AluSc SINE Alu 1 293 -16 554 135 306 56 chr1 201941928 201941947 -80251717 - L1MC5 LINE L1 -352 7609 7596 2104 169 58 12 chr1 201942281 201942694 -80250970 + L1MB2 LINE L1 5732 6163 -8 2160 102 0 0 chr1 201943483 201943758 -80249906 + AluSq SINE Alu 1 275 -38 1008 210 46 18 chr1 201943887 201944106 -80249558 + MIR SINE MIR 37 261 -1 189 195 0 0 chr1 201945086 201945127 -80248537 + (TA)n Simple_repeat Simple_repeat 1 41 0 1485 178 41 7 chr1 201945127 201945397 -80248267 - AluJo SINE Alu -5 307 29 325 231 26 0 chr1 201945398 201945476 -80248188 + MIR SINE MIR 182 261 -1 1729 158 14 4 chr1 201946382 201946660 -80247004 + AluSx SINE Alu 1 281 -31 1813 154 31 14 chr1 201947107 201947400 -80246264 - AluSx SINE Alu -14 298 1 1179 271 113 43 chr1 201947451 201948404 -80245260 - L1ME LINE L1 -344 5818 4933 2246 100 7 3 chr1 201948404 201948705 -80244959 - AluSx SINE Alu -6 306 5 1179 271 113 43 chr1 201948705 201949024 -80244640 - L1ME LINE L1 -1229 4933 4638 391 79 0 32 chr1 201949024 201949087 -80244577 - L1MB7 LINE L1 -1 6183 6123 1179 271 113 43 chr1 201949087 201949208 -80244456 - L1ME LINE L1 -1524 4638 4330 219 261 22 0 chr1 201949531 201949577 -80244087 - L2 LINE L2 -22 3291 3245 547 274 58 25 chr1 201951008 201951034 -80242630 - L1MC5 LINE L1 -466 7495 7471 2047 102 4 0 chr1 201951034 201951298 -80242366 - AluSq SINE Alu -48 265 1 547 274 58 25 chr1 201951298 201951613 -80242051 - L1MC5 LINE L1 -490 7471 7261 592 268 37 12 chr1 201953034 201953198 -80240466 + MIR3 SINE MIR 32 199 -9 345 252 155 10 chr1 201953391 201953494 -80240170 + L2 LINE L2 3155 3272 0 1005 143 0 26 chr1 201953558 201953712 -80239952 + FAM SINE Alu 19 168 -17 1505 166 85 0 chr1 201953772 201954043 -80239621 + AluJb SINE Alu 1 294 -18 2297 73 7 20 chr1 201954143 201954445 -80239219 - AluY SINE Alu -13 298 1 355 311 38 0 chr1 201954446 201954578 -80239086 + MIR3 SINE MIR 70 206 -2 2302 100 3 0 chr1 201955241 201955542 -80238122 - AluSx SINE Alu -10 302 1 22 0 0 0 chr1 201956197 201956219 -80237445 + AT_rich Low_complexity Low_complexity 1 22 0 28 79 0 0 chr1 201958400 201958463 -80235201 + AT_rich Low_complexity Low_complexity 1 63 0 1736 178 16 13 chr1 201959450 201959753 -80233911 - AluJo SINE Alu -8 304 1 2322 93 3 0 chr1 201960327 201960627 -80233037 + AluSp SINE Alu 1 301 -12 554 227 21 35 chr1 201960992 201961133 -80232531 - MIR SINE MIR -14 248 110 243 266 195 9 chr1 201961222 201961335 -80232329 - MIR SINE MIR -66 196 63 1055 242 95 6 chr1 201961342 201961689 -80231975 + L2 LINE L2 1769 2146 -1168 1048 239 197 40 chr1 201961719 201962011 -80231653 + L2 LINE L2 2492 2737 -576 773 199 51 11 chr1 201962011 201962187 -80231477 - MER53 DNA DNA -2 187 5 1048 239 197 40 chr1 201962187 201962612 -80231052 + L2 LINE L2 2737 3313 0 233 329 41 0 chr1 201962866 201962939 -80230725 - L2 LINE L2 -11 3261 3186 657 75 0 0 chr1 201963416 201963496 -80230168 + MADE1 DNA Mariner 1 80 0 1681 109 4 4 chr1 201964230 201964459 -80229205 + AluSg SINE Alu 29 257 -53 409 261 170 36 chr1 201965116 201965281 -80228383 - L2 LINE L2 -1 3312 3126 2091 134 0 0 chr1 201965540 201965859 -80227805 + AluSx SINE Alu 1 319 0 400 228 10 88 chr1 201966116 201966309 -80227355 + LTR37B LTR ERV1 270 447 -21 2367 227 39 2 chr1 201966310 201966901 -80226763 + L1M4 LINE L1 4651 5263 -883 376 113 16 0 chr1 201966935 201966997 -80226667 - L1M2 LINE L1 -513 5787 5725 * 2570 258 26 100 chr1 201966995 201967209 -80226455 - L1M1 LINE L1 -4230 3336 3108 1045 42 0 0 chr1 201967209 201967329 -80226335 - L1PA5 LINE L1 -3 6151 6032 2570 258 26 100 chr1 201967329 201968360 -80225304 - L1M1 LINE L1 -4458 3108 2022 851 331 53 30 chr1 201968767 201969238 -80224426 - L1M1 LINE L1 -5797 1699 1218 5748 146 40 33 chr1 201969243 201970716 -80222948 - L1M2 LINE L1 -574 5738 4249 278 227 0 27 chr1 201971006 201971081 -80222583 - L1 LINE L1 -1399 4747 4675 444 321 133 50 chr1 201971311 201971694 -80221970 - L2 LINE L2 -346 2968 2554 1144 157 78 5 chr1 201971905 201972109 -80221555 - L1PA16 LINE L1 -16 6150 5932 1075 189 5 0 chr1 201972452 201972648 -80221016 + L1MB7 LINE L1 13 209 -6333 * 4272 174 33 23 chr1 201972636 201974137 -80219527 + L1MB7 LINE L1 5043 6552 -130 1735 159 4 11 chr1 201975191 201975468 -80218196 + AluSx SINE Alu 1 275 -37 25 23 0 23 chr1 201975905 201975929 -80217735 + AT_rich Low_complexity Low_complexity 1 25 -17 2099 115 3 7 chr1 201975929 201976224 -80217440 - AluSx SINE Alu -18 294 1 25 23 0 23 chr1 201976224 201976242 -80217422 + AT_rich Low_complexity Low_complexity 25 42 0 582 218 57 83 chr1 201976686 201976915 -80216749 - L2 LINE L2 -2 3311 3089 328 214 79 22 chr1 201977124 201977213 -80216451 - MIR SINE MIR -71 191 98 1984 136 0 19 chr1 201977812 201978120 -80215544 - AluJo SINE Alu -10 302 1 21 0 0 0 chr1 201979037 201979058 -80214606 + AT_rich Low_complexity Low_complexity 1 21 0 207 262 115 0 chr1 201979542 201979603 -80214061 + MIR SINE MIR 7 74 -188 316 284 81 98 chr1 201979922 201980076 -80213588 - MIR SINE MIR 0 262 112 2322 97 0 10 chr1 201980076 201980387 -80213277 + AluSx SINE Alu 1 308 -4 316 284 81 98 chr1 201980387 201980468 -80213196 - MIR SINE MIR -150 112 31 1760 180 0 10 chr1 201980595 201980890 -80212774 - AluJb SINE Alu -9 303 12 963 208 6 0 chr1 201980944 201981117 -80212547 - FRAM SINE Alu -8 168 1 550 306 15 0 chr1 201981119 201981253 -80212411 - MER5A DNA MER1_type -18 171 36 3663 185 156 42 chr1 201981323 201982052 -80211612 + L1MC4a LINE L1 6150 5964 -278 912 126 0 37 chr1 201982052 201982187 -80211477 + FLAM_C SINE Alu 1 130 -3 3663 185 156 42 chr1 201982187 201982503 -80211161 + L1MC4a LINE L1 5963 6242 0 205 283 38 0 chr1 201984393 201984446 -80209218 + L2 LINE L2 3241 3295 -18 2426 60 0 10 chr1 201984966 201985264 -80208400 - AluY SINE Alu -16 295 1 294 169 143 26 chr1 201985407 201985484 -80208180 + MIR SINE MIR 175 260 -2 298 303 13 13 chr1 201985547 201985623 -80208041 + MER91A DNA MER1_type 120 195 -1 1138 47 0 0 chr1 201986103 201986232 -80207432 + AluSp SINE Alu 1 129 -184 2185 101 11 0 chr1 201986238 201986525 -80207139 + AluSp SINE Alu 1 290 -23 856 279 74 0 chr1 201986683 201986952 -80206712 - L1ME LINE L1 -367 5803 5515 337 240 120 16 chr1 201986998 201987123 -80206541 - L2 LINE L2 -68 3245 3108 519 222 38 70 chr1 201987151 201987336 -80206328 - L2 LINE L2 -3108 206 28 2250 97 27 0 chr1 201988675 201988973 -80204691 + AluSp SINE Alu 3 308 -5 201 129 0 0 chr1 201991083 201991114 -80202550 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 303 277 73 108 chr1 201991628 201991689 -80201975 - MLT1L LTR MaLR -142 473 411 879 120 0 63 chr1 201991689 201991831 -80201833 - FLAM_C SINE Alu 0 133 1 303 277 73 108 chr1 201991831 201992029 -80201635 - MLT1L LTR MaLR -204 411 223 2407 79 7 7 chr1 201992130 201992433 -80201231 - AluSc SINE Alu -6 303 1 2187 111 10 0 chr1 201992434 201992731 -80200933 - AluSx SINE Alu -12 300 1 247 214 14 71 chr1 201992731 201992801 -80200863 - MLT1L LTR MaLR -549 66 1 296 249 29 153 chr1 201993244 201993379 -80200285 - MER5A DNA MER1_type -6 183 81 743 185 0 30 chr1 201993379 201993514 -80200150 + FLAM_A SINE Alu 1 131 -2 296 249 29 153 chr1 201993514 201993587 -80200077 - MER5A DNA MER1_type -108 81 1 23 0 0 0 chr1 201993861 201993884 -80199780 + AT_rich Low_complexity Low_complexity 1 23 0 536 261 112 5 chr1 201994604 201994792 -80198872 + MIR SINE MIR 11 218 -44 2006 139 3 0 chr1 201994878 201995172 -80198492 - AluJo SINE Alu -13 299 5 988 116 17 69 chr1 201995242 201995415 -80198249 + AluJo SINE Alu 11 174 -138 2253 106 3 0 chr1 201995530 201995823 -80197841 - AluSp SINE Alu -19 294 1 508 138 43 32 chr1 201995855 201995949 -80197715 - L2 LINE L2 -40 3273 3179 1367 296 75 9 chr1 201995970 201996520 -80197144 - L2 LINE L2 -1227 2087 1502 315 0 0 0 chr1 201996536 201996571 -80197093 + (CA)n Simple_repeat Simple_repeat 2 36 0 231 186 0 0 chr1 201996571 201996599 -80197065 + (TA)n Simple_repeat Simple_repeat 1 28 -42 2286 102 3 7 chr1 201996599 201996902 -80196762 - AluSx SINE Alu -9 303 2 231 186 0 0 chr1 201996902 201996943 -80196721 + (TA)n Simple_repeat Simple_repeat 27 70 0 2097 118 3 7 chr1 201996951 201997240 -80196424 - AluSc SINE Alu -21 288 1 1356 264 105 16 chr1 201997323 201997868 -80195796 - L1MC4a LINE L1 -1962 5846 5254 2099 137 3 0 chr1 201998181 201998481 -80195183 - AluSq SINE Alu -12 301 1 501 365 101 24 chr1 201998684 201999260 -80194404 + L2 LINE L2 622 1241 -2073 182 347 156 36 chr1 201999377 201999544 -80194120 + L2 LINE L2 2921 3107 -165 398 275 27 34 chr1 201999606 201999755 -80193909 - MER5A DNA MER1_type -38 151 4 207 320 165 10 chr1 201999848 201999945 -80193719 - L2 LINE L2 -5 3308 3197 216 264 273 18 chr1 202000124 202000234 -80193430 + MIR SINE MIR 12 149 -113 1082 305 70 24 chr1 202000240 202000804 -80192860 - L2 LINE L2 0 3313 2732 431 266 142 47 chr1 202000809 202001084 -80192580 - L2 LINE L2 -1280 2034 1734 244 304 0 0 chr1 202001087 202001156 -80192508 + MIR SINE MIR 172 240 -22 34 24 0 0 chr1 202004014 202004055 -80189609 + AT_rich Low_complexity Low_complexity 1 41 0 2216 121 3 0 chr1 202005612 202005919 -80187745 + AluSx SINE Alu 1 308 -4 249 275 225 28 chr1 202006176 202006318 -80187346 - MIR SINE MIR -80 182 13 675 234 73 81 chr1 202006989 202007262 -80186402 - MER46C DNA MER2_type -66 272 2 1663 163 99 38 chr1 202007437 202007781 -80185883 - MLT1A1 LTR MaLR 0 365 1 2549 65 0 0 chr1 202008505 202008815 -80184849 - AluY SINE Alu -1 310 1 5419 149 21 52 chr1 202008897 202009540 -80184124 + L1MA10 LINE L1 4848 5509 -825 2257 94 10 19 chr1 202009540 202009848 -80183816 + AluSg1 SINE Alu 1 305 -4 5419 149 21 52 chr1 202009848 202010566 -80183098 + L1MA10 LINE L1 5509 6162 -172 2448 71 0 0 chr1 202010566 202010861 -80182803 + AluY SINE Alu 1 295 -16 5419 149 21 52 chr1 202010861 202010990 -80182674 + L1MA10 LINE L1 6162 6293 -41 2523 119 91 7 chr1 202010990 202011409 -80182255 + L1MA5 LINE L1 5845 6298 -2 933 207 37 18 chr1 202011411 202011432 -80182232 + L1MD1 LINE L1 3721 3740 -2406 329 0 75 38 chr1 202011432 202011485 -80182179 + L1MA10 LINE L1 6279 6333 -1 933 207 37 18 chr1 202011485 202011720 -80181944 + L1MD1 LINE L1 3740 3986 -2160 2207 203 38 83 chr1 202011781 202012437 -80181227 + L1MD1 LINE L1 4597 5181 -1178 1562 104 26 30 chr1 202012437 202012667 -80180997 - MER30 DNA MER1_type 0 230 2 2207 203 38 83 chr1 202012667 202013173 -80180491 + L1MD1 LINE L1 5181 5708 -651 1283 163 20 20 chr1 202013173 202013448 -80180216 - AluJo SINE Alu 0 312 45 2448 146 45 69 chr1 202013448 202013998 -80179666 + L1MD1 LINE L1 5706 6242 0 2168 263 58 18 chr1 202013972 202014761 -80178903 + L1ME3A LINE L1 5150 5964 -206 * 25 0 0 0 chr1 202016470 202016495 -80177169 + GC_rich Low_complexity Low_complexity 1 25 0 245 147 0 0 chr1 202018663 202018697 -80174967 - L2 LINE L2 -16 3256 3223 490 267 14 15 chr1 202018712 202018866 -80174798 - MIR SINE MIR -58 150 6 1353 287 75 14 chr1 202019087 202019615 -80174049 + L1MC4a LINE L1 5465 5646 -518 191 183 117 0 chr1 202020523 202020583 -80173081 - MIR SINE MIR -14 248 182 288 137 0 0 chr1 202020937 202020988 -80172676 + (GGA)n Simple_repeat Simple_repeat 3 53 0 210 244 0 0 chr1 202021715 202021760 -80171904 - L2 LINE L2 -231 3041 2997 197 181 83 56 chr1 202022304 202022376 -80171288 - L2 LINE L2 -3171 143 70 2195 105 7 23 chr1 202022566 202022872 -80170792 + AluSx SINE Alu 1 301 -11 218 276 89 73 chr1 202023076 202023199 -80170465 - L2 LINE L2 -1395 1919 1795 * 1124 353 144 39 chr1 202023188 202024559 -80169105 - L2 LINE L2 -10 3262 1741 430 109 16 0 chr1 202024664 202024728 -80168936 + L1MB1 LINE L1 4020 4084 -2062 4840 155 42 23 chr1 202024729 202026390 -80167274 + L1MB1 LINE L1 4475 6163 -5 256 272 296 0 chr1 202026779 202026860 -80166804 + MIR SINE MIR 71 175 -87 326 324 102 49 chr1 202027263 202027789 -80165875 - L2 LINE L2 0 3272 2688 2157 116 0 0 chr1 202027790 202028092 -80165572 + AluSx SINE Alu 1 302 -10 271 396 69 5 chr1 202028271 202028473 -80165191 - L2 LINE L2 -2496 818 604 225 344 58 32 chr1 202028671 202028860 -80164804 + L2 LINE L2 1160 1353 -1961 220 353 42 42 chr1 202028982 202029101 -80164563 - L2 LINE L2 -25 3247 3129 550 335 35 50 chr1 202029149 202029632 -80164032 - L2 LINE L2 -636 2678 2203 236 272 25 0 chr1 202030049 202030130 -80163534 - L2 LINE L2 -1498 1816 1734 2020 109 0 0 chr1 202030587 202030862 -80162802 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr1 202030866 202030891 -80162773 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 340 325 88 9 chr1 202032034 202032148 -80161516 - L2 LINE L2 0 3272 3150 1024 201 30 10 chr1 202032151 202032350 -80161314 - MER20 DNA MER1_type -1 218 16 444 342 147 9 chr1 202032387 202032732 -80160932 - L2 LINE L2 -136 3177 2881 2183 102 0 0 chr1 202032732 202033025 -80160639 - AluSx SINE Alu -19 293 1 444 342 147 9 chr1 202033025 202033255 -80160409 - L2 LINE L2 -432 2881 2529 191 274 78 0 chr1 202033327 202033378 -80160286 - L2 LINE L2 -5 3267 3213 229 267 100 8 chr1 202034256 202034376 -80159288 + L1ME4a LINE L1 5990 6120 -1 260 302 107 35 chr1 202034864 202035033 -80158631 - MIR SINE MIR -6 256 76 207 205 0 0 chr1 202035173 202035212 -80158452 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 3362 123 49 9 chr1 202035935 202036462 -80157202 - MER34C LTR ERV1 -1 584 37 214 220 40 0 chr1 202036778 202036828 -80156836 - MIR SINE MIR -99 163 112 408 260 96 0 chr1 202037609 202037713 -80155951 - MER81 DNA DNA 0 114 1 977 259 23 23 chr1 202037769 202038028 -80155636 + MIR SINE MIR 4 262 0 516 247 160 7 chr1 202038303 202038453 -80155211 - MER5A DNA MER1_type 0 189 17 198 0 0 0 chr1 202038736 202038758 -80154906 + (T)n Simple_repeat Simple_repeat 1 22 0 4241 102 48 3 chr1 202039109 202039734 -80153930 + MER39B LTR ERV1 1 653 0 667 113 75 38 chr1 202039796 202039956 -80153708 - AluSp SINE Alu 0 313 148 441 286 92 12 chr1 202040060 202040227 -80153437 + MIR SINE MIR 37 214 -48 251 268 98 40 chr1 202040649 202041185 -80152479 + L1ME4a LINE L1 5422 6051 -70 503 284 96 60 chr1 202042297 202042515 -80151149 - MIR SINE MIR -24 238 13 52 30 0 0 chr1 202042938 202043004 -80150660 + AT_rich Low_complexity Low_complexity 1 66 0 197 50 0 100 chr1 202043013 202043073 -80150591 + (TATAA)n Simple_repeat Simple_repeat 5 58 0 275 341 0 0 chr1 202043161 202043243 -80150421 + MIR SINE MIR 51 132 -130 233 302 75 19 chr1 202043371 202043477 -80150187 - L1ME LINE L1 -568 5594 5483 1235 114 6 0 chr1 202043665 202043840 -80149824 - AluSp SINE Alu -8 305 130 371 363 34 11 chr1 202043949 202044128 -80149536 + MIR3 SINE MIR 19 201 -7 2310 82 0 0 chr1 202044859 202045163 -80148501 - AluSg SINE Alu -6 304 1 918 199 22 22 chr1 202045480 202045711 -80147953 - L1MB7 LINE L1 0 6184 5954 1154 143 23 0 chr1 202046123 202046298 -80147366 - MER5A DNA MER1_type -10 179 1 25 23 0 23 chr1 202146825 202146849 -80046815 + AT_rich Low_complexity Low_complexity 1 25 -17 2098 115 3 7 chr1 202146849 202147144 -80046520 - AluSx SINE Alu -18 294 1 25 23 0 23 chr1 202147144 202147162 -80046502 + AT_rich Low_complexity Low_complexity 25 42 0 597 218 57 83 chr1 202147606 202147835 -80045829 - L2 LINE L2 -2 3311 3089 334 214 79 22 chr1 202148044 202148133 -80045531 - MIR SINE MIR -71 191 98 1989 136 0 19 chr1 202148732 202149040 -80044624 - AluJo SINE Alu -10 302 1 21 0 0 0 chr1 202149958 202149979 -80043685 + AT_rich Low_complexity Low_complexity 1 21 0 211 262 115 0 chr1 202150463 202150524 -80043140 + MIR SINE MIR 7 74 -188 326 292 72 89 chr1 202150843 202150997 -80042667 - MIR SINE MIR 0 262 112 2316 97 0 10 chr1 202150997 202151308 -80042356 + AluSx SINE Alu 1 308 -4 326 292 72 89 chr1 202151308 202151389 -80042275 - MIR SINE MIR -150 112 31 1816 189 0 10 chr1 202151516 202151822 -80041842 - AluJb SINE Alu -9 303 1 1070 195 0 0 chr1 202151864 202152038 -80041626 - FRAM SINE Alu -8 168 1 530 313 15 0 chr1 202152040 202152174 -80041490 - MER5A DNA MER1_type -18 171 36 3196 185 157 43 chr1 202152244 202152973 -80040691 + L1MC4a LINE L1 6657 7540 -268 857 126 0 37 chr1 202152973 202153108 -80040556 + FLAM_C SINE Alu 1 130 -3 3196 185 157 43 chr1 202153108 202153412 -80040252 + L1MC4a LINE L1 7540 7808 0 202 283 38 0 chr1 202155314 202155367 -80038297 + L2 LINE L2 3241 3295 -18 2405 60 0 10 chr1 202155887 202156185 -80037479 - AluY SINE Alu -16 295 1 298 169 143 26 chr1 202156328 202156405 -80037259 + MIR SINE MIR 175 260 -2 303 303 13 13 chr1 202156468 202156544 -80037120 + MER91A DNA MER1_type 120 195 -1 1127 47 0 0 chr1 202157024 202157153 -80036511 + AluSp SINE Alu 1 129 -184 2215 104 7 0 chr1 202157159 202157447 -80036217 + AluSp SINE Alu 1 290 -23 743 283 74 0 chr1 202157605 202157874 -80035790 - L1ME LINE L1 -367 5803 5515 348 240 120 16 chr1 202157920 202158045 -80035619 - L2 LINE L2 -68 3245 3108 512 226 40 57 chr1 202158073 202158250 -80035414 - L2 LINE L2 -3108 206 33 2253 97 27 0 chr1 202159598 202159896 -80033768 + AluSp SINE Alu 3 308 -5 201 129 0 0 chr1 202162006 202162037 -80031627 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 821 120 0 63 chr1 202162612 202162754 -80030910 - FLAM_C SINE Alu 0 133 1 2408 79 7 7 chr1 202163053 202163356 -80030308 - AluSc SINE Alu -6 303 1 2189 111 10 0 chr1 202163357 202163654 -80030010 - AluSx SINE Alu -12 300 1 302 285 49 32 chr1 202164167 202164290 -80029374 - MER5A DNA MER1_type -6 183 59 692 182 0 30 chr1 202164302 202164434 -80029230 + FLAM_A SINE Alu 1 128 -5 193 271 0 0 chr1 202164462 202164510 -80029154 - MER5A DNA MER1_type -141 48 1 23 0 0 0 chr1 202164784 202164807 -80028857 + AT_rich Low_complexity Low_complexity 1 23 0 546 261 112 5 chr1 202165528 202165716 -80027948 + MIR SINE MIR 11 218 -44 2014 139 3 0 chr1 202165802 202166096 -80027568 - AluJo SINE Alu -13 299 5 1732 130 10 65 chr1 202166166 202166474 -80027190 + AluJo SINE Alu 11 301 -11 213 373 29 29 chr1 202166741 202166843 -80026821 - MIR SINE MIR -141 121 20 1016 210 46 18 chr1 202166891 202167110 -80026554 + MIR SINE MIR 37 261 -1 189 195 0 0 chr1 202168090 202168131 -80025533 + (TA)n Simple_repeat Simple_repeat 1 41 0 1511 178 41 7 chr1 202168131 202168401 -80025263 - AluJo SINE Alu -5 307 29 332 231 26 0 chr1 202168402 202168480 -80025184 + MIR SINE MIR 182 261 -1 1740 158 14 4 chr1 202169386 202169664 -80024000 + AluSx SINE Alu 1 281 -31 1831 154 31 14 chr1 202170111 202170404 -80023260 - AluSx SINE Alu -14 298 1 836 269 117 41 chr1 202170455 202171408 -80022256 - L1ME LINE L1 -344 5818 4939 2241 100 7 3 chr1 202171408 202171709 -80021955 - AluSx SINE Alu -6 306 5 836 269 117 41 chr1 202171709 202172028 -80021636 - L1ME LINE L1 -1223 4939 4440 356 79 0 32 chr1 202172028 202172091 -80021573 - L1MB7 LINE L1 -1 6183 6123 836 269 117 41 chr1 202172091 202172146 -80021518 - L1ME LINE L1 -1722 4440 4391 218 261 22 0 chr1 202172535 202172581 -80021083 - L2 LINE L2 -22 3291 3245 456 275 59 23 chr1 202174012 202174038 -80019626 - L1MC5 LINE L1 -466 7495 7471 2046 102 4 0 chr1 202174038 202174302 -80019362 - AluSq SINE Alu -48 265 1 456 275 59 23 chr1 202174302 202174608 -80019056 - L1MC5 LINE L1 -490 7471 7261 594 272 35 12 chr1 202176039 202176208 -80017456 + MIR3 SINE MIR 32 204 -4 347 272 146 0 chr1 202176396 202176499 -80017165 + L2 LINE L2 3155 3272 0 1014 143 0 26 chr1 202176563 202176717 -80016947 + FAM SINE Alu 19 168 -17 1522 166 85 0 chr1 202176777 202177048 -80016616 + AluJb SINE Alu 1 294 -18 2390 66 0 20 chr1 202177148 202177452 -80016212 - AluY SINE Alu -13 298 1 367 311 38 0 chr1 202177453 202177585 -80016079 + MIR3 SINE MIR 70 206 -2 2307 99 3 0 chr1 202178248 202178550 -80015114 - AluSx SINE Alu -9 303 1 22 0 0 0 chr1 202179205 202179227 -80014437 + AT_rich Low_complexity Low_complexity 1 22 0 28 79 0 0 chr1 202181409 202181472 -80012192 + AT_rich Low_complexity Low_complexity 1 63 0 1779 178 16 13 chr1 202182459 202182762 -80010902 - AluJo SINE Alu -8 304 1 2077 154 0 16 chr1 202182766 202183078 -80010586 - AluSx SINE Alu -5 307 1 2468 72 0 16 chr1 202183231 202183535 -80010129 - AluY SINE Alu -12 299 1 2332 88 3 7 chr1 202184082 202184379 -80009285 - AluSq SINE Alu -17 296 1 676 163 157 27 chr1 202184667 202184814 -80008850 - AluJb SINE Alu -15 297 132 441 0 0 0 chr1 202185379 202185428 -80008236 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1853 55 0 4 chr1 202185430 202185667 -80007997 - L1PA7 LINE L1 -20 6134 5899 278 253 27 13 chr1 202186050 202186125 -80007539 - MER117 DNA MER1_type -121 76 1 2060 132 0 3 chr1 202186687 202186974 -80006690 - AluSx SINE Alu -26 286 1 2655 43 0 3 chr1 202186985 202187286 -80006378 - AluY SINE Alu -11 300 1 1919 151 0 7 chr1 202188124 202188416 -80005248 + AluJb SINE Alu 1 290 -22 2151 106 10 3 chr1 202188416 202188708 -80004956 + AluSg SINE Alu 1 294 -16 4588 115 85 107 chr1 202188820 202190242 -80003422 + pTR5 LTR ERV1 741 2438 0 672 169 34 0 chr1 202190664 202190782 -80002882 - FLAM_A SINE Alu -7 126 5 2304 111 3 0 chr1 202190785 202191092 -80002572 - AluY SINE Alu -1 310 3 302 328 49 82 chr1 202191175 202191480 -80002184 - L1 LINE L1 -1490 4656 4362 368 309 140 6 chr1 202191595 202191951 -80001713 - L1M4 LINE L1 -1222 4924 4521 1254 170 0 66 chr1 202193107 202193298 -80000366 - AluJb SINE Alu -3 309 136 2253 107 7 3 chr1 202193298 202193598 -80000066 + AluSq SINE Alu 1 301 -12 1254 170 0 66 chr1 202193598 202193647 -80000017 - AluJb SINE Alu -176 136 85 262 296 14 0 chr1 202194950 202195021 -79998643 + L3 LINE CR1 1504 1575 -2 1461 279 19 28 chr1 202195170 202195617 -79998047 + LTR45 LTR ERV1 1 451 -74 186 43 0 0 chr1 202195617 202195640 -79998024 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2245 96 0 3 chr1 202195642 202195924 -79997740 - AluSg SINE Alu -29 281 1 1461 279 19 28 chr1 202195924 202196003 -79997661 + LTR45 LTR ERV1 452 525 0 319 258 76 45 chr1 202196317 202196449 -79997215 + L2 LINE L2 3173 3308 -5 318 252 130 9 chr1 202196880 202196995 -79996669 - MIR SINE MIR -64 144 16 3115 153 29 52 chr1 202198342 202198538 -79995126 + L1MB3 LINE L1 5505 5704 -479 2333 108 0 0 chr1 202198538 202198845 -79994819 - AluSq SINE Alu -6 307 1 3115 153 29 52 chr1 202198845 202199341 -79994323 + L1MB3 LINE L1 5704 6181 -2 236 182 0 0 chr1 202200571 202200615 -79993049 + L1MB4 LINE L1 6018 6061 -119 318 89 0 0 chr1 202200615 202200660 -79993004 + AluJo SINE Alu 1 45 -256 594 89 0 0 chr1 202200660 202200750 -79992914 + AluSg/x SINE Alu 219 308 -1 1673 154 31 0 chr1 202202376 202202635 -79991029 + AluJo SINE Alu 37 303 -9 554 107 0 24 chr1 202202722 202202806 -79990858 + AluSx SINE Alu 2 83 -230 382 232 0 50 chr1 202202945 202203044 -79990620 + LTR8 LTR ERV1 25 118 -573 1398 115 10 24 chr1 202203052 202203293 -79990371 + AluSx SINE Alu 85 310 0 2056 147 34 0 chr1 202203992 202204346 -79989318 + MER47A DNA MER2_type 1 366 0 2138 115 0 3 chr1 202204991 202205277 -79988387 + AluSx SINE Alu 1 285 -27 1431 255 50 45 chr1 202205707 202206110 -79987554 + MER87 LTR ERV1 1 409 -132 2207 97 0 36 chr1 202206110 202206418 -79987246 + AluSg SINE Alu 1 297 -13 1431 255 50 45 chr1 202206418 202206552 -79987112 + MER87 LTR ERV1 409 541 0 1952 140 3 7 chr1 202206665 202206957 -79986707 - AluSx SINE Alu -21 291 1 523 288 96 6 chr1 202206957 202207134 -79986530 - MIR SINE MIR -68 194 2 252 0 0 0 chr1 202208671 202208699 -79984965 + (CA)n Simple_repeat Simple_repeat 1 28 0 249 284 147 0 chr1 202210315 202210417 -79983247 - MIR SINE MIR -62 146 30 348 148 0 0 chr1 202211166 202211227 -79982437 + (TG)n Simple_repeat Simple_repeat 2 62 0 350 342 161 7 chr1 202214515 202214670 -79978994 + MER91A DNA MER1_type 1 179 -17 387 254 187 8 chr1 202214738 202214872 -79978792 + MER5A DNA MER1_type 26 183 -6 2026 113 0 34 chr1 202215263 202215555 -79978109 - AluSx SINE Alu -18 294 13 209 351 188 5 chr1 202215641 202215849 -79977815 - L2 LINE L2 -159 3113 2868 305 357 37 67 chr1 202215961 202216261 -79977403 + L2 LINE L2 2971 3261 -11 1170 145 0 0 chr1 202217202 202217368 -79976296 - AluJb SINE Alu -21 291 126 1629 220 174 12 chr1 202217527 202218037 -79975627 + MLT1E LTR MaLR 1 593 0 1840 142 71 0 chr1 202219215 202219496 -79974168 - AluSx SINE Alu -11 301 1 2049 90 3 84 chr1 202220760 202221082 -79972582 - AluSq SINE Alu -17 296 1 3318 108 4 2 chr1 202221354 202221847 -79971817 - L1PA13 LINE L1 -11 6152 5659 246 242 84 42 chr1 202221851 202221946 -79971718 - MIR SINE MIR -62 146 48 241 358 98 0 chr1 202222028 202222151 -79971513 - MER5A DNA MER1_type -1 188 54 225 0 0 0 chr1 202222411 202222436 -79971228 + (CA)n Simple_repeat Simple_repeat 2 26 0 231 186 0 0 chr1 202222436 202222464 -79971200 + (TA)n Simple_repeat Simple_repeat 1 28 -42 2335 109 3 0 chr1 202222464 202222767 -79970897 - AluSx SINE Alu -7 305 2 231 186 0 0 chr1 202222767 202222808 -79970856 + (TA)n Simple_repeat Simple_repeat 27 70 0 249 136 91 0 chr1 202222816 202222860 -79970804 - Alu SINE Alu -11 297 250 229 147 0 0 chr1 202224567 202224601 -79969063 - L2 LINE L2 -16 3256 3223 474 268 14 15 chr1 202224616 202224770 -79968894 - MIR SINE MIR -58 150 6 1269 286 91 17 chr1 202224981 202225519 -79968145 + L1MC4a LINE L1 5451 6028 -1780 190 183 117 0 chr1 202226427 202226487 -79967177 - MIR SINE MIR -14 248 182 248 135 0 19 chr1 202226841 202226893 -79966771 + (GGA)n Simple_repeat Simple_repeat 3 53 0 197 244 0 0 chr1 202227620 202227665 -79965999 - L2 LINE L2 -231 3041 2997 2249 107 7 23 chr1 202228471 202228780 -79964884 + AluSx SINE Alu 1 304 -8 222 320 10 31 chr1 202228981 202229078 -79964586 - L2 LINE L2 -1395 1919 1825 1927 319 90 15 chr1 202229093 202230525 -79963139 - L2 LINE L2 -10 3262 1741 424 109 16 0 chr1 202230630 202230694 -79962970 + L1MB1 LINE L1 4020 4084 -2062 4749 154 42 23 chr1 202230695 202232356 -79961308 + L1MB1 LINE L1 4475 6163 -5 256 272 296 0 chr1 202232745 202232826 -79960838 + MIR SINE MIR 71 175 -87 336 322 102 49 chr1 202233229 202233755 -79959909 - L2 LINE L2 0 3272 2688 2157 116 0 0 chr1 202233756 202234058 -79959606 + AluSx SINE Alu 1 302 -10 271 396 69 5 chr1 202234237 202234439 -79959225 - L2 LINE L2 -2496 818 604 225 344 58 32 chr1 202234637 202234826 -79958838 + L2 LINE L2 1160 1353 -1961 220 323 42 31 chr1 202234947 202235043 -79958621 - L2 LINE L2 -24 3289 3193 193 317 81 92 chr1 202235115 202236431 -79957233 - L2 LINE L2 -636 2678 1349 2020 109 0 0 chr1 202236431 202236706 -79956958 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr1 202236710 202236735 -79956929 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 193 317 81 92 chr1 202236735 202236812 -79956852 - L2 LINE L2 -1968 1346 1295 340 325 88 9 chr1 202237877 202237991 -79955673 - L2 LINE L2 0 3272 3150 1024 201 30 10 chr1 202237994 202238193 -79955471 - MER20 DNA MER1_type -1 218 16 444 342 147 9 chr1 202238230 202238575 -79955089 - L2 LINE L2 -136 3177 2881 2183 102 0 0 chr1 202238575 202238868 -79954796 - AluSx SINE Alu -19 293 1 444 342 147 9 chr1 202238868 202239098 -79954566 - L2 LINE L2 -432 2881 2529 191 274 78 0 chr1 202239170 202239221 -79954443 - L2 LINE L2 -5 3267 3213 229 267 100 8 chr1 202240099 202240219 -79953445 + L1ME4a LINE L1 5990 6120 -1 260 302 107 35 chr1 202240707 202240876 -79952788 - MIR SINE MIR -6 256 76 207 205 0 0 chr1 202241016 202241055 -79952609 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 3362 123 49 9 chr1 202241778 202242305 -79951359 - MER34C LTR ERV1 -1 584 37 214 220 40 0 chr1 202242621 202242671 -79950993 - MIR SINE MIR -99 163 112 408 260 96 0 chr1 202243452 202243556 -79950108 - MER81 DNA DNA 0 114 1 977 259 23 23 chr1 202243612 202243871 -79949793 + MIR SINE MIR 4 262 0 516 247 160 7 chr1 202244146 202244296 -79949368 - MER5A DNA MER1_type 0 189 17 198 0 0 0 chr1 202244579 202244601 -79949063 + (T)n Simple_repeat Simple_repeat 1 22 0 4241 102 48 3 chr1 202244952 202245577 -79948087 + MER39B LTR ERV1 1 653 0 2220 101 0 16 chr1 202245639 202245957 -79947707 - AluSq SINE Alu 0 313 1 1964 169 58 12 chr1 202246746 202247159 -79946505 - L1MB2 LINE L1 -8 6163 5732 516 135 306 56 chr1 202247493 202247512 -79946152 + L1MC5 LINE L1 7596 7609 -352 2277 92 0 0 chr1 202247512 202247805 -79945859 - AluSc SINE Alu -16 293 1 516 135 306 56 chr1 202247805 202248037 -79945627 + L1MC5 LINE L1 7609 7910 -51 1604 160 0 26 chr1 202248037 202248332 -79945332 - AluJo SINE Alu 0 310 23 2389 65 7 0 chr1 202248799 202249106 -79944558 - AluY SINE Alu -2 309 1 856 299 77 30 chr1 202249110 202249704 -79943960 + L2 LINE L2 2458 3095 -177 869 153 172 0 chr1 202251336 202251493 -79942171 + MER5A DNA MER1_type 6 189 0 1090 251 35 91 chr1 202251578 202252005 -79941659 - MLT1J LTR MaLR -47 464 62 2331 135 62 51 chr1 202252009 202252461 -79941203 + L1MD2 LINE L1 5893 6349 -10 3990 128 36 25 chr1 202253805 202254446 -79939218 - MER51A LTR ERV1 0 640 1 284 252 30 137 chr1 202254498 202254629 -79939035 + L2 LINE L2 3197 3313 0 1915 131 20 10 chr1 202255113 202255418 -79938246 + AluSx SINE Alu 1 308 -4 1443 230 132 26 chr1 202255639 202256131 -79937533 - L1MB8 LINE L1 -3 6175 5632 325 186 17 0 chr1 202256885 202256944 -79936720 - Tigger5 DNA MER2_type 0 2323 2264 223 339 48 40 chr1 202258706 202258882 -79934782 + MIR SINE MIR 42 217 -45 1154 143 23 0 chr1 202259420 202259595 -79934069 + MER5A DNA MER1_type 1 179 -10 918 199 22 22 chr1 202260007 202260238 -79933426 + L1MB7 LINE L1 5954 6184 0 2310 82 0 0 chr1 202260555 202260859 -79932805 + AluSg SINE Alu 1 304 -6 371 363 34 11 chr1 202261590 202261769 -79931895 - MIR3 SINE MIR -7 201 19 1235 114 6 0 chr1 202261878 202262053 -79931611 + AluSp SINE Alu 130 305 -8 233 302 75 19 chr1 202262241 202262347 -79931317 + L1ME LINE L1 5483 5594 -568 275 341 0 0 chr1 202262475 202262557 -79931107 - MIR SINE MIR -130 132 51 197 50 0 100 chr1 202262645 202262705 -79930959 + (TTATA)n Simple_repeat Simple_repeat 5 58 0 52 30 0 0 chr1 202262714 202262780 -79930884 + AT_rich Low_complexity Low_complexity 1 66 0 503 284 96 60 chr1 202263203 202263421 -79930243 + MIR SINE MIR 13 238 -24 535 264 104 34 chr1 202264533 202265069 -79928595 - L1ME4a LINE L1 -70 6051 5422 441 286 92 12 chr1 202265491 202265658 -79928006 - MIR SINE MIR -48 214 37 251 221 273 0 chr1 202266256 202266333 -79927331 - L2 LINE L2 -5 3308 3211 449 302 39 17 chr1 202267413 202267602 -79926062 + MIR SINE MIR 11 203 -59 2170 104 0 0 chr1 202268085 202268382 -79925282 - AluSx SINE Alu -14 298 2 211 291 0 0 chr1 202268392 202268447 -79925217 + CT-rich Low_complexity Low_complexity 3 57 0 220 274 57 57 chr1 202268645 202268751 -79924913 - MIR SINE MIR -129 133 28 587 253 33 82 chr1 202269139 202269384 -79924280 - MIR SINE MIR -14 248 16 875 232 113 39 chr1 202270208 202270655 -79923009 + MER115 DNA AcHobo 142 683 -10 223 254 36 0 chr1 202270659 202270714 -79922950 - L3 LINE CR1 -10 1567 1511 677 186 69 21 chr1 202270901 202271046 -79922618 + MIR SINE MIR 2 153 -109 1255 185 76 4 chr1 202271052 202271185 -79922479 - AluJo SINE Alu -43 269 147 396 0 0 0 chr1 202271185 202271229 -79922435 + (TG)n Simple_repeat Simple_repeat 1 44 0 1255 185 76 4 chr1 202271229 202271344 -79922320 - AluJo SINE Alu -165 147 3 395 236 75 34 chr1 202271489 202271624 -79922040 + MIR3 SINE MIR 43 173 -40 275 336 162 52 chr1 202271660 202271889 -79921775 - L2 LINE L2 0 3272 3019 460 243 36 108 chr1 202271941 202272163 -79921501 - L3 LINE CR1 -254 1323 1118 552 167 49 0 chr1 202273216 202273318 -79920346 - MER94 DNA DNA -27 107 1 183 299 162 8 chr1 202273319 202273436 -79920228 - MER5A DNA MER1_type -48 141 7 247 315 85 54 chr1 202273554 202273684 -79919980 - L2 LINE L2 -5 3267 3134 266 339 134 0 chr1 202273773 202273885 -79919779 - MIR SINE MIR -128 134 8 408 148 32 7 chr1 202274077 202274148 -79919516 + AluSp SINE Alu 126 189 -114 1479 228 93 11 chr1 202274214 202274578 -79919086 + MSTD LTR MaLR 3 396 0 198 0 0 0 chr1 202274860 202274882 -79918782 + (TTA)n Simple_repeat Simple_repeat 2 23 0 279 0 0 0 chr1 202275034 202275065 -79918599 + (CA)n Simple_repeat Simple_repeat 2 32 0 2053 105 0 17 chr1 202276067 202276362 -79917302 + AluSq SINE Alu 2 291 -22 1246 147 28 36 chr1 202276380 202276631 -79917033 + L1MA8 LINE L1 6040 6288 -3 1894 136 31 0 chr1 202276849 202277136 -79916528 + AluSq SINE Alu 1 296 -17 208 324 73 15 chr1 202278428 202278496 -79915168 + MIR SINE MIR 76 147 -61 286 273 169 0 chr1 202278956 202279033 -79914631 - L2 LINE L2 -1 3271 3182 237 280 112 9 chr1 202279530 202279637 -79914027 + L2 LINE L2 3155 3272 0 388 224 143 37 chr1 202280459 202280620 -79913044 - MIR SINE MIR -76 186 9 445 278 125 41 chr1 202281225 202281837 -79911827 - L1ME3A LINE L1 -266 5904 5260 2391 92 7 0 chr1 202282465 202282768 -79910896 - AluSq SINE Alu -8 305 1 1974 167 7 0 chr1 202282938 202283244 -79910420 + AluJo SINE Alu 1 308 -4 2322 93 3 0 chr1 202283973 202284273 -79909391 + AluSp SINE Alu 1 301 -12 554 227 21 35 chr1 202284638 202284779 -79908885 - MIR SINE MIR -14 248 110 243 266 195 9 chr1 202284868 202284981 -79908683 - MIR SINE MIR -66 196 63 1055 242 95 6 chr1 202284988 202285335 -79908329 + L2 LINE L2 1769 2146 -1168 1048 239 197 40 chr1 202285365 202285657 -79908007 + L2 LINE L2 2492 2737 -576 773 199 51 11 chr1 202285657 202285833 -79907831 - MER53 DNA DNA -2 187 5 1048 239 197 40 chr1 202285833 202286258 -79907406 + L2 LINE L2 2737 3313 0 233 329 41 0 chr1 202286512 202286585 -79907079 - L2 LINE L2 -11 3261 3186 657 75 0 0 chr1 202287063 202287143 -79906521 + MADE1 DNA Mariner 1 80 0 1728 109 0 4 chr1 202287877 202288107 -79905557 + AluSg SINE Alu 29 257 -53 409 261 170 36 chr1 202288764 202288929 -79904735 - L2 LINE L2 -1 3312 3126 2091 134 0 0 chr1 202289189 202289508 -79904156 + AluSx SINE Alu 1 319 0 2570 267 28 29 chr1 202289867 202289889 -79903775 - L1M2 LINE L1 -4230 2619 2598 1045 42 0 0 chr1 202289889 202290009 -79903655 - L1PA5 LINE L1 -3 6151 6032 2570 267 28 29 chr1 202290009 202291036 -79902628 - L1M2 LINE L1 -4251 2598 1611 851 331 53 30 chr1 202291447 202291918 -79901746 - L1M2 LINE L1 -5797 982 501 5748 146 40 33 chr1 202291923 202293396 -79900268 - L1M2 LINE L1 -574 5738 4249 278 227 0 27 chr1 202293686 202293761 -79899903 - L1 LINE L1 -1399 4747 4675 444 321 133 50 chr1 202293991 202294374 -79899290 - L2 LINE L2 -346 2968 2554 1144 157 78 5 chr1 202294585 202294789 -79898875 - L1PA16 LINE L1 -16 6150 5932 1075 189 5 0 chr1 202295132 202295328 -79898336 + L1MB7 LINE L1 13 209 -6333 * 4272 174 33 23 chr1 202295316 202296817 -79896847 + L1MB7 LINE L1 5043 6552 -130 1687 177 4 11 chr1 202297871 202298148 -79895516 + AluSx SINE Alu 1 275 -37 2253 106 3 0 chr1 202298357 202298650 -79895014 - AluSp SINE Alu -19 294 1 508 138 43 32 chr1 202298683 202298777 -79894887 - L2 LINE L2 -40 3273 3179 1367 296 75 9 chr1 202298798 202299348 -79894316 - L2 LINE L2 -1227 2087 1502 315 0 0 0 chr1 202299364 202299399 -79894265 + (CA)n Simple_repeat Simple_repeat 2 36 0 231 186 0 0 chr1 202299399 202299427 -79894237 + (TA)n Simple_repeat Simple_repeat 1 28 -42 2286 102 3 7 chr1 202299427 202299730 -79893934 - AluSx SINE Alu -9 303 2 231 186 0 0 chr1 202299730 202299771 -79893893 + (TA)n Simple_repeat Simple_repeat 27 70 0 2097 118 3 7 chr1 202299779 202300068 -79893596 - AluSc SINE Alu -21 288 1 1400 270 121 15 chr1 202300092 202300696 -79892968 - L1MC4a LINE L1 -1887 5921 5254 2099 137 3 0 chr1 202301009 202301309 -79892355 - AluSq SINE Alu -12 301 1 501 365 101 24 chr1 202301512 202302088 -79891576 + L2 LINE L2 622 1241 -2073 182 347 156 36 chr1 202302205 202302372 -79891292 + L2 LINE L2 2921 3107 -165 398 275 27 34 chr1 202302434 202302583 -79891081 - MER5A DNA MER1_type -38 151 4 207 320 165 10 chr1 202302676 202302773 -79890891 - L2 LINE L2 -5 3308 3197 216 264 273 18 chr1 202302952 202303062 -79890602 + MIR SINE MIR 12 149 -113 1082 305 70 24 chr1 202303068 202303632 -79890032 - L2 LINE L2 0 3313 2732 431 266 142 47 chr1 202303637 202303912 -79889752 - L2 LINE L2 -1280 2034 1734 244 304 0 0 chr1 202303915 202303984 -79889680 + MIR SINE MIR 172 240 -22 34 24 0 0 chr1 202306842 202306883 -79886781 + AT_rich Low_complexity Low_complexity 1 41 0 2216 121 3 0 chr1 202308440 202308747 -79884917 + AluSx SINE Alu 1 308 -4 249 275 225 28 chr1 202309004 202309146 -79884518 - MIR SINE MIR -80 182 13 675 234 73 81 chr1 202309817 202310090 -79883574 - MER46C DNA MER2_type -66 272 2 1663 163 99 38 chr1 202310265 202310609 -79883055 - MLT1A1 LTR MaLR 0 365 1 2549 65 0 0 chr1 202311333 202311643 -79882021 - AluY SINE Alu -1 310 1 5419 149 21 52 chr1 202311725 202312368 -79881296 + L1MA10 LINE L1 4848 5509 -825 2257 94 10 19 chr1 202312368 202312676 -79880988 + AluSg1 SINE Alu 1 305 -4 5419 149 21 52 chr1 202312676 202313394 -79880270 + L1MA10 LINE L1 5509 6162 -172 2448 71 0 0 chr1 202313394 202313689 -79879975 + AluY SINE Alu 1 295 -16 5419 149 21 52 chr1 202313689 202313818 -79879846 + L1MA10 LINE L1 6162 6293 -41 2523 119 91 7 chr1 202313818 202314237 -79879427 + L1MA5 LINE L1 5845 6298 -2 933 207 37 18 chr1 202314239 202314260 -79879404 + L1MD1 LINE L1 3721 3740 -2406 329 0 75 38 chr1 202314260 202314313 -79879351 + L1MA10 LINE L1 6279 6333 -1 933 207 37 18 chr1 202314313 202314548 -79879116 + L1MD1 LINE L1 3740 3986 -2160 2207 203 38 83 chr1 202314609 202315265 -79878399 + L1MD1 LINE L1 4597 5181 -1178 1562 104 26 30 chr1 202315265 202315495 -79878169 - MER30 DNA MER1_type 0 230 2 2207 203 38 83 chr1 202315495 202316001 -79877663 + L1MD1 LINE L1 5181 5708 -651 1283 163 20 20 chr1 202316001 202316276 -79877388 - AluJo SINE Alu 0 312 45 2448 146 45 69 chr1 202316276 202316826 -79876838 + L1MD1 LINE L1 5706 6242 0 2168 263 58 18 chr1 202316800 202317589 -79876075 + L1ME3A LINE L1 5150 5964 -206 * 326 247 163 83 chr1 202319186 202319486 -79874178 - L1M2 LINE L1 -6211 638 315 350 230 143 37 chr1 202420534 202420695 -79772969 - MIR SINE MIR -76 186 9 445 278 125 41 chr1 202421300 202421912 -79771752 - L1ME3A LINE L1 -266 5904 5260 2406 89 7 0 chr1 202422540 202422843 -79770821 - AluSq SINE Alu -8 305 1 2163 92 0 7 chr1 202423101 202423385 -79770279 + AluSx SINE Alu 1 282 -30 213 65 0 0 chr1 202423388 202423419 -79770245 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2100 135 0 3 chr1 202423586 202423883 -79769781 - AluSx SINE Alu -15 297 2 590 229 68 6 chr1 202423907 202424092 -79769572 + MER58C DNA MER1_type 1 215 0 2394 51 41 0 chr1 202424124 202424416 -79769248 + AluYa5 SINE Alu 1 304 -7 2169 114 7 3 chr1 202424547 202424844 -79768820 + AluSq SINE Alu 1 298 -15 1629 186 21 3 chr1 202425473 202425758 -79767906 + AluJb SINE Alu 1 290 -22 2275 88 0 58 chr1 202425760 202426090 -79767574 + AluSx SINE Alu 1 311 -1 734 95 0 0 chr1 202426476 202426571 -79767093 - AluSg/x SINE Alu -8 301 207 277 88 0 81 chr1 202426571 202426622 -79767042 - Alu SINE Alu -263 40 1 231 346 63 24 chr1 202426772 202426899 -79766765 - L2 LINE L2 -162 3110 2979 203 186 0 0 chr1 202427998 202428018 -79765646 - L2 LINE L2 0 3313 3294 1918 157 0 13 chr1 202428018 202428317 -79765347 + AluJb SINE Alu 1 295 -17 203 186 0 0 chr1 202428317 202428339 -79765325 - L2 LINE L2 -18 3295 3271 261 312 43 85 chr1 202428375 202428516 -79765148 + MIR3 SINE MIR 28 162 -46 21 0 0 0 chr1 202428760 202428781 -79764883 + AT_rich Low_complexity Low_complexity 1 21 0 449 162 14 197 chr1 202428782 202428924 -79764740 + AluJb SINE Alu 2 117 -195 25 31 0 0 chr1 202428926 202428958 -79764706 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 202429104 202429127 -79764537 + AT_rich Low_complexity Low_complexity 1 23 0 2306 104 0 0 chr1 202429849 202430147 -79763517 - AluSx SINE Alu -14 298 1 2357 111 0 12 chr1 202430464 202430788 -79762876 + 7SLRNA srpRNA srpRNA 1 320 0 23 68 0 0 chr1 202431656 202431700 -79761964 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 202431706 202431735 -79761929 + AT_rich Low_complexity Low_complexity 1 29 0 2310 120 0 0 chr1 202432219 202432528 -79761136 - AluSx SINE Alu -3 309 1 1073 164 0 0 chr1 202432589 202432754 -79760910 - AluJb SINE Alu -11 301 137 489 207 325 0 chr1 202432866 202433035 -79760629 + MIR SINE MIR 37 260 -2 488 134 0 0 chr1 202433155 202433222 -79760442 + AluJ/FRAM SINE Alu 230 296 -16 595 226 65 0 chr1 202433352 202433476 -79760188 + FLAM_A SINE Alu 1 132 -1 2019 121 7 20 chr1 202433704 202434009 -79759655 - AluSx SINE Alu -11 301 1 2002 167 7 0 chr1 202434819 202435125 -79758539 - AluJo SINE Alu -4 308 1 2528 43 3 3 chr1 202435295 202435594 -79758070 + AluY SINE Alu 1 299 -12 2011 132 0 3 chr1 202435605 202435892 -79757772 + AluSx SINE Alu 1 286 -26 255 253 27 13 chr1 202436454 202436529 -79757135 + MER117 DNA MER1_type 1 76 -121 1805 55 0 4 chr1 202436913 202437201 -79756463 + L1PA7 LINE L1 5899 6185 0 675 170 157 27 chr1 202437767 202437914 -79755750 + AluJb SINE Alu 132 297 -15 2268 91 3 7 chr1 202438202 202438499 -79755165 + AluSp SINE Alu 1 296 -17 2406 72 0 16 chr1 202439046 202439350 -79754314 + AluY SINE Alu 1 299 -12 2077 153 0 16 chr1 202439503 202439816 -79753848 + AluSx SINE Alu 1 308 -4 1773 178 16 13 chr1 202439820 202440124 -79753540 + AluJo SINE Alu 1 305 -7 28 79 0 0 chr1 202441112 202441175 -79752489 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr1 202443492 202443514 -79750150 + AT_rich Low_complexity Low_complexity 1 22 0 2293 103 3 0 chr1 202444169 202444471 -79749193 + AluSx SINE Alu 1 303 -9 367 311 38 0 chr1 202445134 202445266 -79748398 - MIR3 SINE MIR -2 206 70 2371 66 0 23 chr1 202445267 202445572 -79748092 + AluY SINE Alu 1 298 -13 1479 167 89 0 chr1 202445672 202445942 -79747722 - AluJb SINE Alu -18 294 1 1014 143 0 26 chr1 202446002 202446156 -79747508 - FAM SINE Alu -17 168 19 347 272 146 0 chr1 202446220 202446323 -79747341 - L2 LINE L2 0 3272 3155 594 272 35 12 chr1 202446511 202446680 -79746984 - MIR3 SINE MIR -4 204 32 444 275 62 17 chr1 202448111 202448417 -79745247 + L1MC5 LINE L1 7261 7475 -486 2046 102 4 0 chr1 202448417 202448681 -79744983 + AluSq SINE Alu 1 265 -48 444 275 62 17 chr1 202448681 202448705 -79744959 + L1MC5 LINE L1 7475 7496 -465 218 261 22 0 chr1 202450138 202450184 -79743480 + L2 LINE L2 3245 3291 -22 866 267 117 41 chr1 202450573 202450628 -79743036 + L1ME LINE L1 4391 4440 -1722 356 79 0 32 chr1 202450628 202450691 -79742973 + L1MB7 LINE L1 6123 6183 -1 866 267 117 41 chr1 202450691 202451010 -79742654 + L1ME LINE L1 4440 4733 -1429 2269 96 7 3 chr1 202451010 202451311 -79742353 + AluSx SINE Alu 5 306 -6 866 267 117 41 chr1 202451311 202452264 -79741400 + L1ME LINE L1 4733 5818 -344 1831 154 31 14 chr1 202452315 202452608 -79741056 + AluSx SINE Alu 1 298 -14 1389 198 15 4 chr1 202453382 202453655 -79740009 - AluSx SINE Alu -36 276 1 332 231 26 0 chr1 202454561 202454639 -79739025 - MIR SINE MIR -1 261 182 1511 178 41 7 chr1 202454640 202454910 -79738754 + AluJo SINE Alu 29 307 -5 189 195 0 0 chr1 202454910 202454951 -79738713 + (TA)n Simple_repeat Simple_repeat 2 42 0 1016 210 46 18 chr1 202455931 202456150 -79737514 - MIR SINE MIR -1 261 37 213 373 29 29 chr1 202456198 202456300 -79737364 + MIR SINE MIR 20 121 -141 1732 130 10 65 chr1 202456567 202456875 -79736789 - AluJo SINE Alu -11 301 11 2014 139 3 0 chr1 202456945 202457239 -79736425 + AluJo SINE Alu 5 299 -13 546 261 112 5 chr1 202457325 202457513 -79736151 - MIR SINE MIR -44 218 11 23 0 0 0 chr1 202458229 202458252 -79735412 + AT_rich Low_complexity Low_complexity 1 23 0 193 271 0 0 chr1 202458526 202458574 -79735090 + MER5A DNA MER1_type 1 48 -141 692 182 0 30 chr1 202458602 202458734 -79734930 - FLAM_A SINE Alu -5 128 1 2136 68 0 4 chr1 202459073 202459336 -79734328 - AluY SINE Alu -13 298 37 2077 127 3 7 chr1 202459339 202459638 -79734026 - AluSq SINE Alu -15 298 1 2036 164 0 0 chr1 202459962 202460274 -79733390 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 202460274 202460295 -79733369 + AT_rich Low_complexity Low_complexity 1 21 0 2204 108 0 10 chr1 202460305 202460612 -79733052 + AluSg SINE Alu 1 304 -6 1618 169 6 68 chr1 202460908 202461234 -79732430 + AluJb SINE Alu 1 306 -6 520 229 59 24 chr1 202461878 202462048 -79731616 + AluJo SINE Alu 1 176 -136 1521 168 41 7 chr1 202462243 202462535 -79731129 + AluJb SINE Alu 7 308 -4 866 140 183 32 chr1 202463713 202463899 -79729765 + AluJo SINE Alu 85 298 -14 377 244 0 11 chr1 202464245 202464335 -79729329 + L2 LINE L2 3222 3310 -3 2314 75 0 3 chr1 202464769 202465061 -79728603 - AluSg SINE Alu -19 291 1 2299 115 0 0 chr1 202466138 202466443 -79727221 + AluSx SINE Alu 1 305 -7 608 169 33 87 chr1 202466774 202466958 -79726706 + MER104 DNA Tc2 1 174 -6 482 252 104 7 chr1 202467140 202467275 -79726389 + MIR SINE MIR 28 175 -87 22 0 0 0 chr1 202469136 202469158 -79724506 + GC_rich Low_complexity Low_complexity 1 22 0 276 214 83 12 chr1 202470738 202470822 -79722842 + MIR SINE MIR 73 162 -100 2236 91 3 0 chr1 202470826 202471122 -79722542 - AluSx SINE Alu -15 297 1 813 153 0 0 chr1 202471372 202471490 -79722174 + FLAM_C SINE Alu 1 118 -15 34 42 0 0 chr1 202471491 202471539 -79722125 + AT_rich Low_complexity Low_complexity 1 48 0 1072 269 102 27 chr1 202471700 202472112 -79721552 + LTR16A LTR ERVL 2 444 -6 814 255 148 0 chr1 202472158 202472374 -79721290 - MIR SINE MIR -10 252 5 1873 151 39 0 chr1 202472405 202472690 -79720974 - AluJb SINE Alu -14 298 3 230 265 44 0 chr1 202473338 202473359 -79720305 + MIR3 SINE MIR 127 146 -62 2400 75 3 3 chr1 202473359 202473666 -79719998 + AluSg SINE Alu 1 307 -3 230 265 44 0 chr1 202473666 202473712 -79719952 + MIR3 SINE MIR 146 197 -11 26 74 0 0 chr1 202474481 202474535 -79719129 + AT_rich Low_complexity Low_complexity 1 54 0 424 336 9 0 chr1 202474816 202474929 -79718735 - MIR SINE MIR -108 154 41 28 48 0 0 chr1 202474985 202475027 -79718637 + AT_rich Low_complexity Low_complexity 1 42 0 1944 162 23 0 chr1 202475195 202475497 -79718167 + AluJo SINE Alu 1 309 -3 1736 113 10 58 chr1 202475697 202476006 -79717658 - AluY SINE Alu -16 295 2 1972 209 46 70 chr1 202476581 202477149 -79716515 - MLT2B3 LTR ERVL 0 554 1 307 244 12 12 chr1 202477825 202477911 -79715753 - MER110-int LTR ERV1 -3332 3469 3384 1964 118 0 40 chr1 202478371 202478675 -79714989 - AluY SINE Alu -19 292 1 450 316 31 54 chr1 202478852 202479351 -79714313 - MER110-int LTR ERV1 -4063 4122 129 2024 241 39 15 chr1 202479817 202480516 -79713148 + L1M3f LINE L1 539 1249 -4097 427 341 45 11 chr1 202480688 202480867 -79712797 + MIR SINE MIR 30 214 -48 207 0 0 0 chr1 202482147 202482170 -79711494 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2263 102 0 7 chr1 202484044 202484347 -79709317 + AluSq SINE Alu 1 301 -12 1217 104 0 0 chr1 202484347 202484520 -79709144 + AluSg/x SINE Alu 134 290 -22 652 252 45 0 chr1 202484556 202484711 -79708953 - MLT1G1 LTR MaLR -2 593 432 2018 158 34 3 chr1 202484711 202485039 -79708625 + MLT2D LTR ERVL 1 338 -76 1152 264 46 64 chr1 202485058 202485494 -79708170 - MLT1G1 LTR MaLR -167 428 1 1756 116 97 0 chr1 202485684 202485970 -79707694 - AluSx SINE Alu 0 311 1 7065 18 0 0 chr1 202486320 202487111 -79706553 + L1PA2 LINE L1 5364 6154 -1 252 77 0 0 chr1 202487114 202487153 -79706511 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 54 29 0 0 chr1 202487452 202487520 -79706144 + AT_rich Low_complexity Low_complexity 1 68 0 1383 66 0 0 chr1 202487802 202487968 -79705696 - AluSc SINE Alu -12 297 132 2229 110 0 7 chr1 202487968 202488268 -79705396 - AluSp SINE Alu -15 298 1 423 254 42 0 chr1 202488318 202488460 -79705204 - L1ME LINE L1 -344 5818 5671 2041 141 0 16 chr1 202489872 202490185 -79703479 - AluSx SINE Alu -1 311 4 25 95 0 0 chr1 202490424 202490498 -79703166 + AT_rich Low_complexity Low_complexity 1 74 0 2242 111 3 0 chr1 202490526 202490823 -79702841 + AluSx SINE Alu 1 298 -14 598 174 9 9 chr1 202491151 202491260 -79702404 + MER57A LTR ERV1 295 403 0 4462 172 23 40 chr1 202491260 202492116 -79701548 + MER57A-int LTR ERV1 1 842 -6695 427 224 0 81 chr1 202492216 202492312 -79701352 + MER57A-int LTR ERV1 841 920 -4203 2295 116 0 16 chr1 202492312 202492630 -79701034 + AluSq SINE Alu 1 313 0 427 224 0 81 chr1 202492630 202492694 -79700970 + MER57A-int LTR ERV1 920 988 -4135 383 235 0 0 chr1 202492694 202492775 -79700889 + MER34C LTR ERV1 155 235 -350 3589 226 41 8 chr1 202492775 202493351 -79700313 + L1 LINE L1 2576 3200 -2946 206 95 24 0 chr1 202493351 202493393 -79700271 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 3589 226 41 8 chr1 202493393 202493813 -79699851 + L1 LINE L1 3200 3605 -2541 5314 171 31 39 chr1 202493814 202495530 -79698134 + L1PA16 LINE L1 4027 5755 -411 2315 114 0 0 chr1 202495530 202495837 -79697827 + AluSg SINE Alu 1 307 -3 5314 171 31 39 chr1 202495837 202496091 -79697573 + L1PA16 LINE L1 5755 5984 -182 2082 115 14 3 chr1 202496091 202496379 -79697285 + AluSx SINE Alu 1 291 -21 5314 171 31 39 chr1 202496379 202496551 -79697113 + L1PA16 LINE L1 5984 6156 -10 2109 106 7 7 chr1 202496768 202497074 -79696590 - AluSx SINE Alu 0 306 1 29 47 0 0 chr1 202497160 202497203 -79696461 + AT_rich Low_complexity Low_complexity 1 43 0 2181 211 50 35 chr1 202497261 202497802 -79695862 - MER119 DNA MER1_type -1 582 34 1697 213 34 121 chr1 202497808 202498351 -79695313 + MER6A DNA MER2_type 1 604 -1 2017 151 3 0 chr1 202498510 202498815 -79694849 - AluSx SINE Alu -6 306 1 1942 120 17 3 chr1 202498823 202499114 -79694550 - AluSx SINE Alu -17 295 1 243 219 69 94 chr1 202499346 202499506 -79694158 - L1ME4a LINE L1 -122 5999 5844 377 275 171 36 chr1 202499527 202499720 -79693944 - MIR SINE MIR -11 251 33 283 271 68 92 chr1 202499779 202500071 -79693593 - L1ME4a LINE L1 -305 5816 5532 199 289 0 0 chr1 202500297 202500349 -79693315 + MIR3 SINE MIR 119 170 -38 288 273 157 16 chr1 202500696 202500817 -79692847 - L2 LINE L2 -4 3309 3172 27 29 0 0 chr1 202501329 202501363 -79692301 + AT_rich Low_complexity Low_complexity 1 34 0 26 30 0 0 chr1 202501382 202501415 -79692249 + AT_rich Low_complexity Low_complexity 1 33 0 317 336 0 10 chr1 202501456 202501560 -79692104 + MIR SINE MIR 108 210 -52 3593 171 172 59 chr1 202503817 202504133 -79689531 - L1MD1 LINE L1 0 7808 7529 728 154 0 44 chr1 202504133 202504269 -79689395 - FLAM_C SINE Alu -2 131 2 3593 171 172 59 chr1 202504269 202504999 -79688665 - L1MD1 LINE L1 -279 7529 6150 488 313 15 0 chr1 202505069 202505203 -79688461 + MER5A DNA MER1_type 36 171 -18 1056 195 0 0 chr1 202505205 202505379 -79688285 + FRAM SINE Alu 1 168 -8 271 196 22 0 chr1 202505420 202505466 -79688198 + AluSp SINE Alu 135 181 -122 1303 174 14 0 chr1 202505568 202505787 -79687877 + AluJb SINE Alu 82 303 -9 2345 97 0 10 chr1 202505995 202506306 -79687358 - AluSx SINE Alu -4 308 1 233 316 65 22 chr1 202506321 202506460 -79687204 + MIR SINE MIR 118 262 0 185 262 115 0 chr1 202506779 202506840 -79686824 - MIR SINE MIR -188 74 7 21 0 0 0 chr1 202507324 202507345 -79686319 + AT_rich Low_complexity Low_complexity 1 21 0 2001 136 0 19 chr1 202508263 202508571 -79685093 + AluJo SINE Alu 1 302 -10 303 214 79 22 chr1 202509170 202509259 -79684405 + MIR SINE MIR 98 191 -71 344 322 87 9 chr1 202511391 202511506 -79682158 + MER91A DNA MER1_type 56 179 -17 356 254 187 8 chr1 202511574 202511708 -79681956 + MER5A DNA MER1_type 26 183 -6 1963 116 0 34 chr1 202512099 202512391 -79681273 - AluSx SINE Alu -18 294 13 264 350 38 69 chr1 202512797 202513088 -79680576 + L2 LINE L2 2971 3252 -20 1150 145 0 0 chr1 202514038 202514204 -79679460 - AluJb SINE Alu -21 291 126 1720 210 178 16 chr1 202514363 202514873 -79678791 + MLT1E LTR MaLR 1 593 0 1805 142 71 0 chr1 202516051 202516332 -79677332 - AluSx SINE Alu -11 301 1 2022 90 3 84 chr1 202517597 202517919 -79675745 - AluSq SINE Alu -17 296 1 3477 109 4 2 chr1 202518191 202518684 -79674980 - L1PA13 LINE L1 -11 6152 5659 237 242 84 42 chr1 202518688 202518783 -79674881 - MIR SINE MIR -62 146 48 239 183 33 33 chr1 202518925 202518985 -79674679 + MER5A DNA MER1_type 84 143 -46 482 182 57 97 chr1 202519135 202519311 -79674353 + L2 LINE L2 3143 3311 -2 25 23 0 23 chr1 202519755 202519773 -79673891 + AT_rich Low_complexity Low_complexity 1 18 -24 2120 115 3 7 chr1 202519773 202520068 -79673596 + AluSx SINE Alu 1 294 -18 25 23 0 23 chr1 202520068 202520092 -79673572 + AT_rich Low_complexity Low_complexity 18 42 0 297 0 0 0 chr1 202520661 202520694 -79672970 + (TG)n Simple_repeat Simple_repeat 2 34 0 30 27 0 0 chr1 202521003 202521040 -79672624 + AT_rich Low_complexity Low_complexity 1 37 0 196 109 22 22 chr1 202521248 202521294 -79672370 + GA-rich Low_complexity Low_complexity 2 47 0 2445 68 7 3 chr1 202521451 202521761 -79671903 + AluY SINE Alu 1 311 0 205 152 0 0 chr1 202522920 202522953 -79670711 + (CGG)n Simple_repeat Simple_repeat 3 35 0 336 182 20 71 chr1 202523741 202523840 -79669824 + L2 LINE L2 3218 3311 -2 2445 81 0 0 chr1 202524144 202524453 -79669211 + AluSg SINE Alu 1 309 -1 314 276 194 0 chr1 202525582 202525716 -79667948 + MIR SINE MIR 53 212 -50 369 109 0 0 chr1 202526487 202526542 -79667122 + (CA)n Simple_repeat Simple_repeat 2 56 0 227 284 147 0 chr1 202527292 202527394 -79666270 + MIR SINE MIR 30 146 -62 3956 114 100 101 chr1 202528067 202529296 -79664368 + pTR5 LTR ERV1 892 2438 0 700 169 34 0 chr1 202529718 202529836 -79663828 - FLAM_A SINE Alu -7 126 5 2282 110 3 0 chr1 202529843 202530151 -79663513 - AluY SINE Alu 0 311 3 389 295 140 6 chr1 202530654 202531010 -79662654 - L1M4 LINE L1 -1222 4924 4521 1218 170 0 66 chr1 202532166 202532357 -79661307 - AluJb SINE Alu -3 309 136 2224 107 7 3 chr1 202532357 202532657 -79661007 + AluSq SINE Alu 1 301 -12 1218 170 0 66 chr1 202532657 202532706 -79660958 - AluJb SINE Alu -176 136 85 243 296 14 0 chr1 202534009 202534080 -79659584 + L3 LINE CR1 1504 1575 -2 1513 270 23 32 chr1 202534229 202534676 -79658988 + LTR45 LTR ERV1 1 451 -74 186 43 0 0 chr1 202534676 202534699 -79658965 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2225 96 0 3 chr1 202534701 202534983 -79658681 - AluSg SINE Alu -29 281 1 1513 270 23 32 chr1 202534983 202535062 -79658602 + LTR45 LTR ERV1 452 525 0 347 306 52 45 chr1 202535374 202535508 -79658156 + L2 LINE L2 3133 3267 -5 326 252 130 9 chr1 202535939 202536054 -79657610 - MIR SINE MIR -64 144 16 299 83 0 21 chr1 202537350 202537398 -79656266 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 2365 84 13 3 chr1 202538319 202538628 -79655036 + AluSx SINE Alu 1 312 0 653 191 101 32 chr1 202538733 202538921 -79654743 + MER106A DNA MER1_type 30 230 -6 815 187 0 22 chr1 202538921 202539055 -79654609 + FLAM_A SINE Alu 1 131 -2 1981 95 0 4 chr1 202540097 202540350 -79653314 - AluSq SINE Alu -18 295 44 30 27 0 0 chr1 202542273 202542310 -79651354 + AT_rich Low_complexity Low_complexity 1 37 0 2076 93 55 3 chr1 202542388 202542679 -79650985 + AluSg SINE Alu 1 306 -4 4450 161 151 57 chr1 202542980 202543601 -79650063 + Charlie1a DNA MER1_type 1 563 -2198 2123 114 0 7 chr1 202543601 202543890 -79649774 - AluSx SINE Alu -14 298 12 4450 161 151 57 chr1 202543890 202544549 -79649115 + Charlie1a DNA MER1_type 563 1451 -4 2479 83 0 0 chr1 202544561 202544861 -79648803 - AluSc SINE Alu -9 300 1 195 347 21 21 chr1 202544889 202544984 -79648680 - MIR SINE MIR -78 130 36 828 189 0 0 chr1 202546112 202546244 -79647420 + FLAM_C SINE Alu 2 133 0 21 0 0 0 chr1 202546892 202546913 -79646751 + AT_rich Low_complexity Low_complexity 1 21 0 2146 102 36 13 chr1 202547055 202547412 -79646252 + AluSx SINE Alu 1 364 0 467 311 120 0 chr1 202547573 202547740 -79645924 - MIR SINE MIR -56 206 20 2061 136 0 13 chr1 202549311 202549619 -79644045 + AluSx SINE Alu 1 304 -8 1982 115 0 84 chr1 202549639 202550004 -79643660 + AluSg SINE Alu 1 310 0 2241 70 40 27 chr1 202550190 202550491 -79643173 - AluY SINE Alu -6 305 1 2390 73 27 0 chr1 202551167 202551468 -79642196 + AluY SINE Alu 1 309 -2 456 89 11 22 chr1 202551691 202551781 -79641883 + (TA)n Simple_repeat Simple_repeat 1 89 0 1657 125 0 16 chr1 202551914 202552162 -79641502 - AluSg/x SINE Alu 0 312 69 810 111 9 0 chr1 202552163 202552271 -79641393 - AluSq/x SINE Alu -203 110 2 344 311 7 52 chr1 202552286 202552337 -79641327 - MIR SINE MIR -92 170 118 2456 72 0 0 chr1 202552337 202552630 -79641034 + AluY SINE Alu 1 293 -18 344 311 7 52 chr1 202552630 202552713 -79640951 - MIR SINE MIR -144 118 42 186 387 75 0 chr1 202553047 202553140 -79640524 - L2 LINE L2 -4 3268 3169 372 189 98 49 chr1 202553198 202553341 -79640323 + MER104 DNA Tc2 6 155 -25 2061 140 0 0 chr1 202553408 202553701 -79639963 - AluSx SINE Alu -17 295 3 31 0 0 0 chr1 202553896 202553927 -79639737 + AT_rich Low_complexity Low_complexity 1 31 0 1406 258 52 48 chr1 202554094 202554462 -79639202 + MER87 LTR ERV1 37 409 -132 2162 97 0 36 chr1 202554462 202554770 -79638894 + AluSg SINE Alu 1 297 -13 1406 258 52 48 chr1 202554770 202554904 -79638760 + MER87 LTR ERV1 409 541 0 1900 140 3 7 chr1 202555017 202555309 -79638355 - AluSx SINE Alu -21 291 1 530 283 96 6 chr1 202555309 202555486 -79638178 - MIR SINE MIR -68 194 2 249 333 36 6 chr1 202555789 202555954 -79637710 - L1M4 LINE L1 -1222 4924 4755 201 129 0 0 chr1 202556885 202556916 -79636748 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 2250 97 27 0 chr1 202559026 202559324 -79634340 - AluSp SINE Alu -5 308 3 519 222 38 70 chr1 202560664 202560849 -79632815 + L2 LINE L2 28 206 -3108 337 240 120 16 chr1 202560877 202561002 -79632662 + L2 LINE L2 3108 3245 -68 856 279 74 0 chr1 202561048 202561317 -79632347 + L1ME LINE L1 5515 5803 -367 2127 115 11 0 chr1 202561474 202561761 -79631903 - AluSp SINE Alu -23 290 1 1138 47 0 0 chr1 202561767 202561896 -79631768 - AluSp SINE Alu -184 129 1 298 303 13 13 chr1 202562374 202562450 -79631214 - MER91A DNA MER1_type -1 195 120 294 169 143 26 chr1 202562513 202562590 -79631074 - MIR SINE MIR -2 260 175 1040 93 20 13 chr1 202562733 202562883 -79630781 + AluY SINE Alu 1 151 -160 407 163 12 38 chr1 202563092 202563172 -79630492 - AluS SINE Alu -233 79 2 1636 154 31 0 chr1 202563258 202563517 -79630147 - AluJo SINE Alu -9 303 37 654 85 32 0 chr1 202565144 202565238 -79628426 - AluY SINE Alu -1 310 214 287 75 0 0 chr1 202565239 202565279 -79628385 - AluJo SINE Alu -261 40 1 246 182 0 0 chr1 202565279 202565323 -79628341 - L1MB4 LINE L1 -119 6061 6018 3480 148 29 52 chr1 202566555 202567049 -79626615 - L1MB3 LINE L1 -4 6179 5704 2221 114 0 0 chr1 202567049 202567356 -79626308 + AluSq SINE Alu 1 307 -6 3480 148 29 52 chr1 202567356 202567552 -79626112 - L1MB3 LINE L1 -479 5704 5505 1758 138 26 0 chr1 202568814 202569083 -79624581 - MER47A DNA MER2_type -90 276 1 1364 115 10 24 chr1 202569782 202570027 -79623637 - AluSg/x SINE Alu 0 310 85 395 222 0 50 chr1 202570035 202570134 -79623530 - LTR8 LTR ERV1 -573 118 25 2077 113 0 3 chr1 202570565 202570848 -79622816 - AluSx SINE Alu -30 282 1 901 52 0 9 chr1 202621821 202621936 -79571728 + L1PA11 LINE L1 6049 6162 -12 2332 77 17 0 chr1 202621948 202622245 -79571419 + AluSx SINE Alu 11 312 0 557 197 101 32 chr1 202622350 202622538 -79571126 + MER106A DNA MER1_type 30 230 -6 763 187 0 22 chr1 202622538 202622672 -79570992 + FLAM_A SINE Alu 1 131 -2 1955 99 0 4 chr1 202623714 202623967 -79569697 - AluSq SINE Alu -18 295 44 2418 97 0 0 chr1 202626077 202626385 -79567279 + AluSq SINE Alu 3 310 -3 2873 166 160 60 chr1 202626686 202627307 -79566357 + Charlie1a DNA MER1_type 1 735 -2026 2128 114 0 7 chr1 202627307 202627596 -79566068 - AluSx SINE Alu -14 298 12 2873 166 160 60 chr1 202627596 202627843 -79565821 + Charlie1a DNA MER1_type 735 956 -499 594 165 21 58 chr1 202627945 202628173 -79565491 + Charlie1a DNA MER1_type 1158 1451 -4 2477 83 0 0 chr1 202628185 202628485 -79565179 - AluSc SINE Alu -9 300 1 200 347 21 21 chr1 202628513 202628608 -79565056 - MIR SINE MIR -78 130 36 776 189 0 0 chr1 202629736 202629868 -79563796 + FLAM_C SINE Alu 2 133 0 21 0 0 0 chr1 202630515 202630536 -79563128 + AT_rich Low_complexity Low_complexity 1 21 0 2156 102 36 13 chr1 202630678 202631024 -79562640 + AluSx SINE Alu 1 353 0 355 85 0 17 chr1 202631354 202631413 -79562251 - Alu SINE Alu -240 59 2 550 229 28 7 chr1 202631437 202631622 -79562042 + MER58C DNA MER1_type 1 215 0 2409 48 41 0 chr1 202631654 202631946 -79561718 + AluYa5 SINE Alu 1 304 -7 2210 111 7 3 chr1 202632077 202632374 -79561290 + AluSq SINE Alu 1 298 -15 1651 186 21 3 chr1 202633003 202633288 -79560376 + AluJb SINE Alu 1 290 -22 2274 91 0 58 chr1 202633290 202633620 -79560044 + AluSx SINE Alu 1 311 -1 2104 141 0 3 chr1 202634724 202635028 -79558636 - AluSx SINE Alu -9 303 1 803 256 83 8 chr1 202635076 202635318 -79558346 - MIR SINE MIR 0 262 3 1747 155 3 51 chr1 202636068 202636384 -79557280 - AluJo SINE Alu -11 301 1 700 249 155 5 chr1 202636691 202636904 -79556760 - L3 LINE CR1 -723 854 610 429 134 37 0 chr1 202636915 202636997 -79556667 - AluS SINE Alu -2 307 223 22 0 0 0 chr1 202638544 202638566 -79555098 + GC_rich Low_complexity Low_complexity 1 22 0 487 252 104 7 chr1 202640427 202640562 -79553102 - MIR SINE MIR -87 175 28 608 169 33 87 chr1 202640744 202640928 -79552736 - MER104 DNA Tc2 -6 174 1 2265 67 40 27 chr1 202641259 202641559 -79552105 - AluY SINE Alu -7 304 1 2397 73 26 0 chr1 202642235 202642538 -79551126 + AluY SINE Alu 1 311 0 189 121 17 35 chr1 202642761 202642819 -79550845 + (TA)n Simple_repeat Simple_repeat 1 57 0 221 373 0 9 chr1 202643145 202643255 -79550409 + CT-rich Low_complexity Low_complexity 1 109 0 2360 112 54 3 chr1 202644482 202644874 -79548790 - Tigger2 DNA MER2_type 0 2718 2307 664 182 8 53 chr1 202644874 202644900 -79548764 - AluJo SINE Alu -153 159 133 2231 54 7 4 chr1 202644900 202645226 -79548438 - AluY SINE Alu 0 327 1 664 182 8 53 chr1 202645226 202645330 -79548334 - AluJo SINE Alu -179 133 34 2170 105 7 0 chr1 202645543 202645839 -79547825 + AluSx SINE Alu 1 298 -14 528 236 47 47 chr1 202645843 202645991 -79547673 - MIR SINE MIR -100 162 15 630 177 9 0 chr1 202646481 202646590 -79547074 + MER21B LTR ERV1 388 497 -366 276 204 0 0 chr1 202646590 202646639 -79547025 - MER7A DNA MER2_type 0 336 288 852 179 0 0 chr1 202646641 202646781 -79546883 + FLAM_C SINE Alu 3 142 -1 1067 129 11 6 chr1 202646787 202646965 -79546699 - MER7A DNA MER2_type -41 296 118 1022 142 147 0 chr1 202646966 202647191 -79546473 - Tigger2 DNA MER2_type -10 2708 2451 3777 134 40 47 chr1 202647270 202647682 -79545982 - Tigger2 DNA MER2_type -1974 744 338 740 169 0 0 chr1 202647682 202647818 -79545846 - L1PB3 LINE L1 0 6154 6019 3777 134 40 47 chr1 202647818 202648153 -79545511 - Tigger2 DNA MER2_type -2380 338 2 740 136 32 0 chr1 202648153 202648277 -79545387 - MER7A DNA MER2_type -220 126 1 1383 207 36 21 chr1 202648277 202648610 -79545054 + MER21B LTR ERV1 496 833 -30 769 215 154 14 chr1 202648650 202648864 -79544800 + MIR SINE MIR 3 246 -16 1741 154 11 18 chr1 202649959 202650239 -79543425 + AluJb SINE Alu 11 288 -24 948 231 80 23 chr1 202650300 202650651 -79543013 - L1ME3A LINE L1 -14 6156 5786 2150 116 0 0 chr1 202651026 202651320 -79542344 - AluSc SINE Alu -15 294 1 2337 92 0 0 chr1 202651474 202651766 -79541898 - AluSx SINE Alu -20 292 1 307 321 98 11 chr1 202652030 202652214 -79541450 + L1ME LINE L1 5272 5471 -2337 285 258 134 53 chr1 202652257 202652434 -79541230 + L1ME LINE L1 5560 5758 -363 2015 201 127 21 chr1 202652434 202652947 -79540717 - MLT1F1 LTR MaLR 0 567 1 285 258 134 53 chr1 202652947 202652978 -79540686 + L1ME LINE L1 5758 5785 -336 3627 159 34 33 chr1 202653214 202653740 -79539924 - L1MB3 LINE L1 -1 6182 5653 1983 135 55 25 chr1 202653740 202654104 -79539560 - THE1C LTR MaLR 0 375 1 3627 159 34 33 chr1 202654104 202654362 -79539302 - L1MB3 LINE L1 -530 5653 5397 742 281 29 37 chr1 202654824 202655066 -79538598 + L3 LINE CR1 1064 1303 -274 214 260 156 0 chr1 202655361 202655438 -79538226 - MER5A DNA MER1_type -2 187 99 226 62 69 62 chr1 202655641 202655771 -79537893 + (TA)n Simple_repeat Simple_repeat 2 132 0 1805 141 3 31 chr1 202655876 202656187 -79537477 + AluJb SINE Alu 1 303 0 1118 168 11 6 chr1 202656247 202656426 -79537238 + AluJo SINE Alu 1 180 -132 360 235 0 0 chr1 202656541 202656622 -79537042 - MER34C LTR ERV1 -350 235 155 2300 114 0 16 chr1 202656689 202657005 -79536659 - AluSq SINE Alu -2 311 1 4087 175 23 39 chr1 202657201 202658056 -79535608 - MER57A-int LTR ERV1 -6695 842 1 556 174 9 9 chr1 202658056 202658165 -79535499 - MER57A LTR ERV1 0 403 295 2225 111 3 0 chr1 202658493 202658790 -79534874 - AluSx SINE Alu -14 298 1 25 95 0 0 chr1 202658818 202658892 -79534772 + AT_rich Low_complexity Low_complexity 1 74 0 25 31 0 0 chr1 202659793 202659825 -79533839 + AT_rich Low_complexity Low_complexity 1 32 0 440 335 45 11 chr1 202659888 202660067 -79533597 - MIR SINE MIR -48 214 30 2018 238 35 10 chr1 202660239 202660815 -79532849 - L1M1 LINE L1 -5079 2486 1897 272 304 27 44 chr1 202661404 202661690 -79531974 + MER89-int LTR ERV1 3295 4122 -4504 438 327 48 5 chr1 202661696 202661904 -79531760 + MER89-int LTR ERV1 368 584 -4063 1964 118 0 40 chr1 202662081 202662385 -79531279 + AluY SINE Alu 1 292 -19 307 244 12 12 chr1 202662845 202662931 -79530733 + MER89-int LTR ERV1 3384 3469 -3332 1955 211 46 70 chr1 202663606 202664174 -79529490 + MLT2B3 LTR ERVL 1 554 0 2396 55 0 52 chr1 202664749 202665059 -79528605 + AluY SINE Alu 2 295 -16 1015 183 19 10 chr1 202665534 202665748 -79527916 + MLT1H1 LTR MaLR 294 511 -31 6240 28 0 0 chr1 202665748 202666504 -79527160 - L1PA4 LINE L1 -36 6119 5364 1740 116 97 0 chr1 202666854 202667140 -79526524 + AluSx SINE Alu 1 311 0 982 253 60 76 chr1 202667330 202667765 -79525899 + MLT1G1 LTR MaLR 1 428 -167 1852 156 37 3 chr1 202667784 202668111 -79525553 - MLT2D LTR ERVL -76 338 1 591 263 39 0 chr1 202668111 202668267 -79525397 + MLT1G1 LTR MaLR 432 593 -2 1202 127 0 0 chr1 202668303 202668476 -79525188 - AluSg/x SINE Alu -6 306 134 2321 92 0 7 chr1 202668476 202668780 -79524884 - AluSq SINE Alu -11 302 1 33 0 0 0 chr1 202669914 202669947 -79523717 + AT_rich Low_complexity Low_complexity 1 33 0 2335 114 10 0 chr1 202670278 202670585 -79523079 + AluSx SINE Alu 1 310 -2 459 236 106 8 chr1 202671186 202671309 -79522355 - MER5A DNA MER1_type -1 188 54 1974 85 0 15 chr1 202671321 202671592 -79522072 - AluY SINE Alu -12 299 33 975 84 72 0 chr1 202672355 202672521 -79521143 + L1MA8 LINE L1 6081 6258 -33 1636 165 19 0 chr1 202672621 202672888 -79520776 - AluJb SINE Alu -40 272 1 1618 169 6 68 chr1 202673532 202673858 -79519806 - AluJb SINE Alu -6 306 1 2204 108 0 10 chr1 202674154 202674461 -79519203 - AluSg SINE Alu -6 304 1 2063 160 0 0 chr1 202674474 202674786 -79518878 - AluSx SINE Alu 0 312 1 2020 133 3 13 chr1 202675110 202675411 -79518253 + AluSq SINE Alu 1 298 -15 2143 69 0 22 chr1 202675415 202675692 -79517972 + AluY SINE Alu 38 308 -3 1919 216 52 35 chr1 202675823 202676364 -79517300 - MER119 DNA MER1_type 0 583 34 1794 141 74 70 chr1 202676370 202676863 -79516801 + MER6A DNA MER2_type 1 604 -1 2035 148 3 0 chr1 202677022 202677327 -79516337 - AluSx SINE Alu -6 306 1 1909 120 17 3 chr1 202677335 202677626 -79516038 - AluSx SINE Alu -17 295 1 239 214 65 89 chr1 202677860 202678028 -79515636 - L1ME4a LINE L1 -122 5999 5836 470 277 163 35 chr1 202678032 202678234 -79515430 - MIR SINE MIR -2 260 33 498 297 56 79 chr1 202678289 202678627 -79515037 - L1ME4a LINE L1 -305 5816 5485 245 336 90 30 chr1 202678754 202678888 -79514776 + MIR3 SINE MIR 50 191 -17 327 287 165 17 chr1 202679210 202679325 -79514339 - L2 LINE L2 -4 3268 3137 30 45 0 0 chr1 202679866 202679910 -79513754 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 202679916 202679945 -79513719 + AT_rich Low_complexity Low_complexity 1 29 0 2421 72 3 3 chr1 202680429 202680736 -79512928 - AluSg SINE Alu -3 307 1 1863 151 39 0 chr1 202681398 202681682 -79511982 + AluJb SINE Alu 3 297 -15 814 255 148 0 chr1 202681713 202681929 -79511735 + MIR SINE MIR 5 252 -10 612 282 91 5 chr1 202681975 202682195 -79511469 - LTR16A LTR ERVL -6 444 206 1145 114 0 0 chr1 202682296 202682445 -79511219 - AluSq/x SINE Alu -163 149 1 3483 138 62 69 chr1 202682887 202683083 -79510581 + L1MB7 LINE L1 5377 5573 -611 2153 140 0 0 chr1 202683083 202683390 -79510274 + AluSx SINE Alu 6 312 0 3483 138 62 69 chr1 202683390 202683986 -79509678 + L1MB7 LINE L1 5573 6163 -21 280 316 79 18 chr1 202684715 202684829 -79508835 - MIR SINE MIR -122 140 20 596 298 30 0 chr1 202684950 202685118 -79508546 + MIR SINE MIR 3 175 -87 1225 272 57 22 chr1 202685155 202685523 -79508141 + L2 LINE L2 1484 1864 -1450 443 195 69 0 chr1 202685639 202685726 -79507938 + FRAM SINE Alu 61 153 -23 1757 170 21 0 chr1 202685731 202686066 -79507598 + AluJb SINE Alu 1 341 0 339 147 0 5 chr1 202686338 202686544 -79507120 + AluJo SINE Alu 1 300 -2 1797 141 12 0 chr1 202687290 202687566 -79506098 - AluSx SINE Alu 0 305 27 2085 128 30 0 chr1 202687613 202687909 -79505755 - AluJb SINE Alu -7 305 1 2301 108 0 0 chr1 202688271 202688567 -79505097 + AluSx SINE Alu 1 296 -16 1236 142 33 33 chr1 202688576 202688787 -79504877 + AluJb SINE Alu 83 293 -19 206 244 0 0 chr1 202689007 202689052 -79504612 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 241 197 106 0 chr1 202689596 202689662 -79504002 - MIR SINE MIR 0 262 190 1205 141 0 117 chr1 202689662 202689819 -79503845 - L1MB8 LINE L1 0 6178 6004 2339 78 14 0 chr1 202689819 202690114 -79503550 + AluSp SINE Alu 1 299 -14 2084 128 3 3 chr1 202690114 202690410 -79503254 + AluSx SINE Alu 1 296 -16 1205 141 0 117 chr1 202690410 202690541 -79503123 - L1MB8 LINE L1 -172 6006 5923 664 224 35 0 chr1 202690543 202690686 -79502978 - MIR SINE MIR -55 207 60 1936 156 0 3 chr1 202690687 202690989 -79502675 - AluSx SINE Alu -11 301 1 218 329 148 27 chr1 202691279 202691428 -79502236 - L2 LINE L2 -192 3080 2914 376 297 162 16 chr1 202691533 202691718 -79501946 - MIR SINE MIR -50 212 1 198 303 88 113 chr1 202692668 202692796 -79500868 + MIR SINE MIR 6 127 -135 2422 81 0 0 chr1 202692796 202693105 -79500559 - AluSg SINE Alu -1 309 1 198 303 88 113 chr1 202693105 202693214 -79500450 + MIR SINE MIR 127 237 -25 367 182 20 71 chr1 202693409 202693508 -79500156 - L2 LINE L2 -2 3311 3218 205 152 0 0 chr1 202694296 202694329 -79499335 + (CCG)n Simple_repeat Simple_repeat 3 35 0 344 336 0 10 chr1 202696259 202696363 -79497301 - MIR SINE MIR -52 210 108 22 35 0 0 chr1 202696404 202696433 -79497231 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 202696848 202696871 -79496793 + AT_rich Low_complexity Low_complexity 1 23 0 230 196 18 0 chr1 202696887 202696943 -79496721 - L1MC4 LINE L1 -10 8032 7976 2119 142 0 0 chr1 202697230 202697541 -79496123 - AluJo SINE Alu 0 312 2 637 181 105 33 chr1 202697766 202697966 -79495698 - MER33 DNA MER1_type 0 324 8 2131 97 3 14 chr1 202698107 202698395 -79495269 + AluSx SINE Alu 1 285 -27 180 0 0 0 chr1 202698395 202698415 -79495249 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 213 143 0 0 chr1 202699314 202699349 -79494315 + L2 LINE L2 3263 3297 -16 1954 190 62 64 chr1 202699498 202699681 -79493983 - Charlie1b DNA MER1_type -2244 517 335 2361 103 0 0 chr1 202699681 202699981 -79493683 - AluSx SINE Alu -12 300 1 1689 185 10 17 chr1 202699984 202700276 -79493388 - AluJo SINE Alu -20 292 3 1954 190 62 64 chr1 202700276 202700603 -79493061 - Charlie1b DNA MER1_type -2428 333 4 202 227 45 0 chr1 202700617 202700661 -79493003 - L3 LINE CR1 -13 1564 1519 543 335 77 29 chr1 202700747 202701096 -79492568 - L2 LINE L2 -948 2366 2001 1249 107 0 0 chr1 202701153 202701321 -79492343 - AluSg/x SINE Alu -8 302 135 395 303 103 0 chr1 202701322 202701487 -79492177 - L2 LINE L2 -1303 2011 1830 2095 114 3 19 chr1 202701900 202702207 -79491457 + AluSx SINE Alu 1 302 -10 595 226 65 0 chr1 202702435 202702559 -79491105 - FLAM_A SINE Alu -1 132 1 488 134 0 0 chr1 202702689 202702756 -79490908 - AluJ/FRAM SINE Alu -16 296 230 489 207 325 0 chr1 202702876 202703045 -79490619 - MIR SINE MIR -2 260 37 1073 164 0 0 chr1 202703157 202703322 -79490342 + AluJb SINE Alu 137 301 -11 2177 120 7 0 chr1 202703383 202703683 -79489981 + AluSx SINE Alu 1 302 -10 528 103 143 8 chr1 202704494 202704620 -79489044 - Tigger3(Golem) DNA MER2_type -537 2492 2350 42 36 0 0 chr1 202704620 202704676 -79488988 + AT_rich Low_complexity Low_complexity 1 56 0 401 134 0 0 chr1 202704678 202704745 -79488919 - Tigger3(Golem) DNA MER2_type -2687 342 276 645 170 10 0 chr1 202704746 202704846 -79488818 - Tigger3(Golem) DNA MER2_type -2928 101 1 2977 133 46 6 chr1 202704949 202705452 -79488212 - L1MA5A LINE L1 -6 6291 5769 460 306 12 0 chr1 202705476 202705553 -79488111 - L1M4 LINE L1 -3776 2370 2294 3337 157 44 23 chr1 202705553 202706701 -79486963 - L1MC3 LINE L1 -509 5788 2199 1816 189 0 10 chr1 202756729 202757035 -79436629 + AluJb SINE Alu 1 303 -9 326 292 72 89 chr1 202757162 202757243 -79436421 + MIR SINE MIR 31 112 -150 2316 97 0 10 chr1 202757243 202757554 -79436110 - AluSx SINE Alu -4 308 1 326 292 72 89 chr1 202757554 202757708 -79435956 + MIR SINE MIR 112 262 0 211 262 115 0 chr1 202758027 202758088 -79435576 - MIR SINE MIR -188 74 7 21 0 0 0 chr1 202758572 202758593 -79435071 + AT_rich Low_complexity Low_complexity 1 21 0 1989 136 0 19 chr1 202759510 202759818 -79433846 + AluJo SINE Alu 1 302 -10 334 214 79 22 chr1 202760417 202760506 -79433158 + MIR SINE MIR 98 191 -71 597 218 57 83 chr1 202760715 202760944 -79432720 + L2 LINE L2 3089 3311 -2 25 23 0 23 chr1 202761388 202761406 -79432258 + AT_rich Low_complexity Low_complexity 1 18 -24 2098 115 3 7 chr1 202761406 202761701 -79431963 + AluSx SINE Alu 1 294 -18 25 23 0 23 chr1 202761701 202761725 -79431939 + AT_rich Low_complexity Low_complexity 18 42 0 243 0 0 0 chr1 202762294 202762321 -79431343 + (TG)n Simple_repeat Simple_repeat 2 28 0 30 27 0 0 chr1 202762630 202762667 -79430997 + AT_rich Low_complexity Low_complexity 1 37 0 196 109 22 22 chr1 202762875 202762921 -79430743 + GA-rich Low_complexity Low_complexity 2 47 0 2406 68 7 3 chr1 202763078 202763388 -79430276 + AluY SINE Alu 1 311 0 22 0 0 0 chr1 202765265 202765287 -79428377 + GC_rich Low_complexity Low_complexity 1 22 0 487 252 104 7 chr1 202767148 202767283 -79426381 - MIR SINE MIR -87 175 28 608 169 33 87 chr1 202767465 202767649 -79426015 - MER104 DNA Tc2 -6 174 1 2299 115 0 0 chr1 202767980 202768285 -79425379 - AluSx SINE Alu -7 305 1 2314 75 0 3 chr1 202769362 202769654 -79424010 + AluSg SINE Alu 1 291 -19 377 244 0 11 chr1 202770088 202770178 -79423486 - L2 LINE L2 -3 3310 3222 866 140 183 32 chr1 202770524 202770710 -79422954 - AluJo SINE Alu -14 298 85 1846 161 16 7 chr1 202771889 202772193 -79421471 - AluJb SINE Alu -5 307 1 1618 169 6 68 chr1 202772837 202773163 -79420501 - AluJb SINE Alu -6 306 1 2169 107 0 13 chr1 202773459 202773767 -79419897 - AluSg SINE Alu -6 304 1 2063 160 0 0 chr1 202773780 202774092 -79419572 - AluSx SINE Alu 0 312 1 2084 130 3 10 chr1 202774416 202774716 -79418948 + AluSq SINE Alu 1 298 -15 2157 65 0 4 chr1 202774719 202774981 -79418683 + AluY SINE Alu 37 297 -14 2149 92 0 7 chr1 202775185 202775469 -79418195 + AluSx SINE Alu 1 282 -30 246 32 0 0 chr1 202775472 202775503 -79418161 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2114 135 0 3 chr1 202775670 202775967 -79417697 - AluSx SINE Alu -15 297 2 550 229 28 7 chr1 202775991 202776176 -79417488 + MER58C DNA MER1_type 1 215 0 2409 48 41 0 chr1 202776208 202776500 -79417164 + AluYa5 SINE Alu 1 304 -7 2210 111 7 3 chr1 202776631 202776928 -79416736 + AluSq SINE Alu 1 298 -15 1651 186 21 3 chr1 202777557 202777842 -79415822 + AluJb SINE Alu 1 290 -22 2274 91 0 58 chr1 202777844 202778174 -79415490 + AluSx SINE Alu 1 311 -1 714 84 0 0 chr1 202778642 202778737 -79414927 - AluSg/x SINE Alu -8 302 208 262 98 0 24 chr1 202778737 202778778 -79414886 - Alu SINE Alu -263 40 1 224 343 75 22 chr1 202778937 202779071 -79414593 - L2 LINE L2 -162 3110 2970 208 186 0 0 chr1 202780163 202780183 -79413481 - L2 LINE L2 0 3313 3294 1935 157 0 13 chr1 202780183 202780482 -79413182 + AluJb SINE Alu 1 295 -17 208 186 0 0 chr1 202780482 202780504 -79413160 - L2 LINE L2 -18 3295 3271 272 312 43 85 chr1 202780540 202780681 -79412983 + MIR3 SINE MIR 28 162 -46 21 0 0 0 chr1 202780925 202780946 -79412718 + AT_rich Low_complexity Low_complexity 1 21 0 404 161 14 196 chr1 202780946 202781089 -79412575 + AluJb SINE Alu 1 117 -195 25 31 0 0 chr1 202781091 202781123 -79412541 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 202781269 202781292 -79412372 + AT_rich Low_complexity Low_complexity 1 23 0 2304 104 0 0 chr1 202782013 202782311 -79411353 - AluSx SINE Alu -14 298 1 2339 112 0 12 chr1 202782628 202782950 -79410714 + 7SLRNA srpRNA srpRNA 1 318 -2 23 68 0 0 chr1 202783818 202783862 -79409802 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 202783868 202783897 -79409767 + AT_rich Low_complexity Low_complexity 1 29 0 2320 120 0 0 chr1 202784381 202784690 -79408974 - AluSx SINE Alu -3 309 1 1082 164 0 0 chr1 202784751 202784916 -79408748 - AluJb SINE Alu -11 301 137 502 207 325 0 chr1 202785028 202785197 -79408467 + MIR SINE MIR 37 260 -2 457 134 0 0 chr1 202785317 202785384 -79408280 + AluJ/FRAM SINE Alu 230 296 -16 548 226 65 0 chr1 202785514 202785638 -79408026 + FLAM_A SINE Alu 1 132 -1 814 207 10 15 chr1 202785876 202786074 -79407590 - AluSg/x SINE Alu -16 296 100 292 289 0 0 chr1 202786074 202786164 -79407500 + AluSp SINE Alu 23 112 -191 2054 160 7 0 chr1 202786977 202787283 -79406381 - AluJo SINE Alu -4 308 1 2277 94 3 19 chr1 202787453 202787762 -79405902 + AluY SINE Alu 1 304 -7 31 0 0 0 chr1 202787805 202787836 -79405828 + AT_rich Low_complexity Low_complexity 1 31 0 2066 140 0 0 chr1 202788031 202788324 -79405340 + AluSx SINE Alu 3 295 -17 314 189 98 49 chr1 202788391 202788534 -79405130 - MER104 DNA Tc2 -25 155 6 197 387 75 0 chr1 202788592 202788685 -79404979 + L2 LINE L2 3169 3268 -4 346 306 15 52 chr1 202789019 202789101 -79404563 + MIR SINE MIR 42 119 -143 2443 72 0 0 chr1 202789101 202789394 -79404270 - AluY SINE Alu -18 293 1 346 306 15 52 chr1 202789394 202789445 -79404219 + MIR SINE MIR 119 170 -92 834 109 0 0 chr1 202789459 202789569 -79404095 + AluSq/x SINE Alu 1 110 -202 1670 125 0 16 chr1 202789570 202789818 -79403846 + AluSg/x SINE Alu 67 310 0 189 121 17 35 chr1 202789949 202790007 -79403657 + (TA)n Simple_repeat Simple_repeat 1 57 0 2397 73 26 0 chr1 202790230 202790533 -79403131 - AluY SINE Alu 0 311 1 2229 70 40 27 chr1 202791209 202791510 -79402154 + AluY SINE Alu 1 305 -6 1987 115 0 84 chr1 202791696 202792051 -79401613 - AluSg SINE Alu 0 310 1 2041 143 0 13 chr1 202792071 202792379 -79401285 - AluSx SINE Alu -8 304 1 767 144 23 30 chr1 202794932 202795064 -79398600 + FLAM_A SINE Alu 1 131 -2 214 143 0 0 chr1 202795918 202795953 -79397711 + L2 LINE L2 3263 3297 -16 1750 168 59 73 chr1 202796143 202796288 -79397376 - Charlie1b DNA MER1_type -2288 473 327 2364 103 0 0 chr1 202796288 202796588 -79397076 - AluSx SINE Alu -12 300 1 1715 185 10 17 chr1 202796591 202796883 -79396781 - AluJo SINE Alu -20 292 3 1750 168 59 73 chr1 202796883 202797210 -79396454 - Charlie1b DNA MER1_type -2436 325 4 204 227 45 0 chr1 202797224 202797268 -79396396 - L3 LINE CR1 -13 1564 1519 510 340 91 30 chr1 202797354 202797760 -79395904 - L2 LINE L2 -948 2366 1936 1251 107 0 0 chr1 202797760 202797928 -79395736 - AluSg/x SINE Alu -8 302 135 1738 184 10 0 chr1 202798124 202798433 -79395231 + AluJo SINE Alu 1 312 0 249 341 119 58 chr1 202798728 202799482 -79394182 - L2 LINE L2 -527 2787 1988 1103 59 15 0 chr1 202799947 202800083 -79393581 + AluY SINE Alu 162 299 -12 485 308 8 8 chr1 202801087 202801220 -79392444 - L2 LINE L2 -3 3310 3178 22 35 0 0 chr1 202801538 202801567 -79392097 + AT_rich Low_complexity Low_complexity 1 29 0 2360 112 54 3 chr1 202802938 202803330 -79390334 - Tigger2 DNA MER2_type 0 2718 2307 664 182 8 53 chr1 202803330 202803356 -79390308 - AluJo SINE Alu -153 159 133 2231 54 7 4 chr1 202803356 202803682 -79389982 - AluY SINE Alu 0 327 1 664 182 8 53 chr1 202803682 202803786 -79389878 - AluJo SINE Alu -179 133 34 2095 142 0 3 chr1 202804809 202805112 -79388552 - AluSx SINE Alu -10 302 1 803 256 83 8 chr1 202805160 202805402 -79388262 - MIR SINE MIR 0 262 3 1747 155 3 51 chr1 202806152 202806468 -79387196 - AluJo SINE Alu -11 301 1 724 252 126 44 chr1 202806775 202806999 -79386665 - L3 LINE CR1 -723 854 603 1774 169 13 7 chr1 202806999 202807307 -79386357 - AluSx SINE Alu -2 310 1 724 252 126 44 chr1 202807307 202807352 -79386312 - L3 LINE CR1 -974 603 563 328 262 74 37 chr1 202807798 202808042 -79385622 + L1ME4a LINE L1 5869 6121 0 2085 128 30 0 chr1 202809841 202810137 -79383527 + AluJb SINE Alu 1 305 -7 1798 141 12 0 chr1 202810185 202810461 -79383203 + AluSx SINE Alu 27 305 0 339 125 0 0 chr1 202811207 202811271 -79382393 - AluJo SINE Alu -2 300 237 932 157 0 0 chr1 202811273 202811413 -79382251 - AluJo SINE Alu -172 140 1 1756 170 21 0 chr1 202811685 202812020 -79381644 - AluJb SINE Alu 0 341 1 1457 195 39 14 chr1 202812025 202812307 -79381357 - AluJo SINE Alu -23 289 1 549 267 18 98 chr1 202812327 202812604 -79381060 + L1ME LINE L1 5383 5637 -525 2494 48 0 0 chr1 202812715 202813010 -79380654 - AluY SINE Alu -16 295 1 378 267 41 0 chr1 202813139 202813285 -79380379 + L1ME LINE L1 5671 5822 -348 2312 100 0 3 chr1 202813331 202813630 -79380034 + AluSp SINE Alu 1 298 -15 1376 54 0 0 chr1 202813630 202813796 -79379868 + AluSc SINE Alu 132 297 -12 54 29 0 0 chr1 202814078 202814146 -79379518 + AT_rich Low_complexity Low_complexity 1 68 0 6536 19 0 0 chr1 202814438 202815282 -79378382 - L1PA2 LINE L1 0 6155 5364 1740 116 97 0 chr1 202815632 202815918 -79377746 + AluSx SINE Alu 1 311 0 1020 252 57 76 chr1 202816108 202816544 -79377120 + MLT1G1 LTR MaLR 1 428 -167 1874 158 34 3 chr1 202816563 202816891 -79376773 - MLT2D LTR ERVL -76 338 1 601 252 45 0 chr1 202816891 202817046 -79376618 + MLT1G1 LTR MaLR 432 593 -2 1202 127 0 0 chr1 202817082 202817255 -79376409 - AluSg/x SINE Alu -6 306 134 2321 92 0 7 chr1 202817255 202817559 -79376105 - AluSq SINE Alu -11 302 1 25 31 0 0 chr1 202819988 202820020 -79373644 + AT_rich Low_complexity Low_complexity 1 32 0 440 335 45 11 chr1 202820083 202820262 -79373402 - MIR SINE MIR -48 214 30 2018 238 35 10 chr1 202820434 202821010 -79372654 - L1M1 LINE L1 -5079 2486 1897 272 304 27 44 chr1 202821599 202821885 -79371779 + MER89-int LTR ERV1 3295 4122 -4504 438 327 48 5 chr1 202821891 202822099 -79371565 + MER89-int LTR ERV1 368 584 -4063 1964 118 0 40 chr1 202822276 202822580 -79371084 + AluY SINE Alu 1 292 -19 307 244 12 12 chr1 202823040 202823126 -79370538 + MER89-int LTR ERV1 3384 3469 -3332 1955 211 46 70 chr1 202823801 202824369 -79369295 + MLT2B3 LTR ERVL 1 554 0 2396 55 0 52 chr1 202824945 202825255 -79368409 + AluY SINE Alu 2 295 -16 1948 159 23 0 chr1 202825768 202826069 -79367595 - AluJo SINE Alu -4 308 1 28 48 0 0 chr1 202826237 202826279 -79367385 + AT_rich Low_complexity Low_complexity 1 42 0 424 336 9 0 chr1 202826335 202826448 -79367216 + MIR SINE MIR 41 154 -108 26 74 0 0 chr1 202826729 202826783 -79366881 + AT_rich Low_complexity Low_complexity 1 54 0 2018 109 3 14 chr1 202827694 202827979 -79365685 + AluSx SINE Alu 4 285 -27 180 0 0 0 chr1 202827979 202827999 -79365665 + (CAAT)n Simple_repeat Simple_repeat 2 21 0 1053 109 73 0 chr1 202828709 202828901 -79364763 - L1MA8 LINE L1 -5 6286 6081 2009 85 0 11 chr1 202829663 202829933 -79363731 + AluY SINE Alu 33 299 -12 459 236 106 8 chr1 202829945 202830068 -79363596 + MER5A DNA MER1_type 54 188 -1 2335 114 10 0 chr1 202830669 202830976 -79362688 - AluSx SINE Alu -2 310 1 33 0 0 0 chr1 202831307 202831340 -79362324 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr1 202831732 202831760 -79361904 + AT_rich Low_complexity Low_complexity 1 28 0 341 259 59 37 chr1 202832305 202832440 -79361224 + L2 LINE L2 3161 3298 -15 2240 123 0 0 chr1 202833626 202833928 -79359736 - AluSx SINE Alu -10 302 1 3455 139 62 69 chr1 202834370 202834566 -79359098 + L1MB7 LINE L1 5377 5573 -611 2153 140 0 0 chr1 202834566 202834873 -79358791 + AluSx SINE Alu 6 312 0 3455 139 62 69 chr1 202834873 202835469 -79358195 + L1MB7 LINE L1 5573 6163 -21 306 308 80 19 chr1 202836194 202836322 -79357342 - MIR SINE MIR -67 141 7 354 346 24 0 chr1 202836429 202836556 -79357108 + MIR SINE MIR 3 132 -130 298 169 143 26 chr1 202836720 202836797 -79356867 - MIR SINE MIR -2 260 175 2405 60 0 10 chr1 202836939 202837237 -79356427 + AluY SINE Alu 1 295 -16 202 283 38 0 chr1 202837757 202837810 -79355854 - L2 LINE L2 -18 3295 3241 3196 185 157 43 chr1 202839712 202840016 -79353648 - L1MC4a LINE L1 0 7808 7540 857 126 0 37 chr1 202840016 202840151 -79353513 - FLAM_C SINE Alu -3 130 1 3196 185 157 43 chr1 202840151 202840880 -79352784 - L1MC4a LINE L1 -268 7540 6657 552 306 15 0 chr1 202840950 202841084 -79352580 + MER5A DNA MER1_type 36 171 -18 984 194 6 0 chr1 202841086 202841251 -79352413 + FRAM SINE Alu 1 160 -16 340 246 197 44 chr1 202841354 202841537 -79352127 + L2 LINE L2 1929 2139 -1175 535 159 18 25 chr1 202841554 202841717 -79351947 + CT-rich Low_complexity Low_complexity 4 165 0 2053 267 92 41 chr1 202841767 202842541 -79351123 + L2 LINE L2 2156 2968 -346 6920 55 14 2 chr1 202843297 202844451 -79349213 - L1PA7 LINE L1 -13 6141 4985 432 0 0 0 chr1 202844516 202844564 -79349100 + (TG)n Simple_repeat Simple_repeat 2 49 0 264 248 45 96 chr1 202844564 202844721 -79348943 - L1MA10 LINE L1 -19 6315 6167 707 260 45 0 chr1 202844964 202845141 -79348523 + MIR SINE MIR 76 260 -2 463 288 0 65 chr1 202845293 202845432 -79348232 - L2 LINE L2 0 3272 3143 1999 139 24 0 chr1 202845704 202845998 -79347666 - AluSx SINE Alu -9 303 3 21 0 0 0 chr1 202847096 202847117 -79346547 + AT_rich Low_complexity Low_complexity 1 21 0 1844 175 0 25 chr1 202847280 202847600 -79346064 - AluJo SINE Alu 0 312 1 187 233 100 50 chr1 202848017 202848077 -79345587 - L2 LINE L2 -2 3270 3208 1375 123 9 14 chr1 202848138 202848350 -79345314 - AluSg/x SINE Alu -20 292 82 6597 153 41 33 chr1 202849000 202850350 -79343314 - L1M LINE L1 -816 5330 4056 246 62 0 0 chr1 202850416 202850448 -79343216 + (TC)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr1 202850475 202850497 -79343167 + AT_rich Low_complexity Low_complexity 1 22 0 328 311 83 28 chr1 202850718 202850972 -79342692 + L1M4 LINE L1 2336 2603 -3543 1761 154 11 14 chr1 202851440 202851719 -79341945 + AluJb SINE Alu 11 288 -24 1048 219 83 26 chr1 202851780 202852131 -79341533 - L1ME3A LINE L1 -14 6156 5786 2135 116 0 0 chr1 202852506 202852800 -79340864 - AluSc SINE Alu -15 294 1 2323 92 0 0 chr1 202852954 202853246 -79340418 - AluSx SINE Alu -20 292 1 307 321 98 11 chr1 202853509 202853693 -79339971 + L1ME LINE L1 5272 5471 -2337 336 264 130 51 chr1 202853729 202853913 -79339751 + L1ME LINE L1 5553 5758 -363 2031 201 127 21 chr1 202853913 202854426 -79339238 - MLT1F1 LTR MaLR 0 567 1 336 264 130 51 chr1 202854426 202854457 -79339207 + L1ME LINE L1 5758 5785 -336 3864 159 34 33 chr1 202854693 202855219 -79338445 - L1MB3 LINE L1 -1 6182 5653 1980 135 55 25 chr1 202855219 202855583 -79338081 - THE1C LTR MaLR 0 375 1 3864 159 34 33 chr1 202855583 202855841 -79337823 - L1MB3 LINE L1 -530 5653 5397 750 281 29 37 chr1 202856303 202856545 -79337119 + L3 LINE CR1 1064 1303 -274 215 260 156 0 chr1 202856840 202856917 -79336747 - MER5A DNA MER1_type -2 187 99 226 62 69 62 chr1 202857120 202857250 -79336414 + (TA)n Simple_repeat Simple_repeat 1 131 0 1797 141 3 31 chr1 202857355 202857666 -79335998 + AluJb SINE Alu 1 303 0 1962 137 7 7 chr1 202857733 202858025 -79335639 + AluJo SINE Alu 9 300 -12 629 163 2 0 chr1 202858123 202858242 -79335422 - L1 LINE L1 -1955 4191 4072 1843 127 0 91 chr1 202858881 202859211 -79334453 + AluJb SINE Alu 1 300 -12 2091 97 17 0 chr1 202859618 202859907 -79333757 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr1 202860353 202860383 -79333281 + AT_rich Low_complexity Low_complexity 1 30 0 832 205 6 29 chr1 202860395 202860566 -79333098 - AluJo SINE Alu -141 171 5 1933 103 96 0 chr1 202861017 202861299 -79332365 - AluSg SINE Alu -1 309 1 441 0 0 0 chr1 202861362 202861379 -79332285 + (TG)n Simple_repeat Simple_repeat 1 66 0 441 0 0 0 chr1 202861379 202861428 -79332236 + (TG)n Simple_repeat Simple_repeat 2 50 0 292 304 30 30 chr1 202862747 202862882 -79330782 - L2 LINE L2 -955 2359 2225 1188 151 54 70 chr1 202863150 202863448 -79330216 - AluJb SINE Alu -8 294 2 1807 91 4 0 chr1 202863620 202863850 -79329814 + AluSg/x SINE Alu 66 296 -16 1234 142 33 33 chr1 202863859 202864070 -79329594 + AluJb SINE Alu 83 293 -19 206 244 0 0 chr1 202864290 202864335 -79329329 + (CATATA)n Simple_repeat Simple_repeat 1 45 0 186 163 93 23 chr1 202864814 202864857 -79328807 - L2 LINE L2 -5 3308 3263 249 197 106 0 chr1 202864879 202864945 -79328719 - MIR SINE MIR 0 262 190 1166 141 0 117 chr1 202864945 202865102 -79328562 - L1MB8 LINE L1 0 6178 6004 2319 78 14 0 chr1 202865102 202865397 -79328267 + AluSp SINE Alu 1 299 -14 2072 128 3 3 chr1 202865397 202865693 -79327971 + AluSx SINE Alu 1 296 -16 1166 141 0 117 chr1 202865693 202865824 -79327840 - L1MB8 LINE L1 -172 6006 5923 661 270 51 0 chr1 202865826 202865970 -79327694 - MIR SINE MIR -55 207 51 1926 156 0 3 chr1 202865970 202866272 -79327392 - AluSx SINE Alu -11 301 1 661 270 51 0 chr1 202866272 202866305 -79327359 - MIR SINE MIR -211 51 21 223 329 148 27 chr1 202866562 202866711 -79326953 - L2 LINE L2 -192 3080 2914 385 297 162 16 chr1 202866816 202867001 -79326663 - MIR SINE MIR -50 212 1 205 152 0 0 chr1 202868487 202868520 -79325144 + (CCG)n Simple_repeat Simple_repeat 3 35 0 350 336 0 10 chr1 202870450 202870554 -79323110 - MIR SINE MIR -52 210 108 26 30 0 0 chr1 202870595 202870628 -79323036 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr1 202870647 202870681 -79322983 + AT_rich Low_complexity Low_complexity 1 34 0 327 287 165 17 chr1 202871199 202871314 -79322350 + L2 LINE L2 3137 3268 -4 244 336 90 30 chr1 202871636 202871770 -79321894 - MIR3 SINE MIR -17 191 50 277 271 68 92 chr1 202871938 202872230 -79321434 + L1ME4a LINE L1 5532 5816 -305 471 277 163 35 chr1 202872289 202872491 -79321173 + MIR SINE MIR 33 260 -2 295 211 151 78 chr1 202872495 202872713 -79320951 + L1ME4a LINE L1 5836 6069 -52 1903 120 17 3 chr1 202872897 202873188 -79320476 + AluSx SINE Alu 1 295 -17 2006 148 3 0 chr1 202873196 202873501 -79320163 + AluSx SINE Alu 1 306 -6 337 130 0 19 chr1 202873660 202873714 -79319950 + MER6A DNA MER2_type -64 4294967284 -617 * 1991 141 83 71 chr1 202873704 202874152 -79319512 - MER6A DNA MER2_type -152 453 1 2160 211 50 35 chr1 202874158 202874699 -79318965 + MER119 DNA MER1_type 34 582 -1 29 47 0 0 chr1 202874757 202874800 -79318864 + AT_rich Low_complexity Low_complexity 1 43 0 2085 106 7 7 chr1 202874886 202875192 -79318472 + AluSx SINE Alu 1 306 0 5450 203 160 29 chr1 202875410 202875582 -79318082 - L1PA16 LINE L1 -10 6156 6008 2088 108 14 3 chr1 202875582 202875870 -79317794 - AluSx SINE Alu -21 291 1 5450 203 160 29 chr1 202875870 202876123 -79317541 - L1PA16 LINE L1 -158 6008 5789 2268 114 0 0 chr1 202876123 202876430 -79317234 - AluSg SINE Alu -3 307 1 5450 203 160 29 chr1 202876430 202878567 -79315097 - L1PA16 LINE L1 -377 5789 3076 206 95 24 0 chr1 202878567 202878609 -79315055 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 5450 203 160 29 chr1 202878609 202879182 -79314482 - L1PA16 LINE L1 -3090 3076 2579 383 235 0 0 chr1 202879185 202879266 -79314398 - MER34C LTR ERV1 -350 235 155 2245 117 0 16 chr1 202879333 202879649 -79314015 - AluSq SINE Alu -2 311 1 4364 175 23 39 chr1 202879845 202880700 -79312964 - MER57A-int LTR ERV1 -6695 842 1 590 174 9 9 chr1 202880700 202880809 -79312855 - MER57A LTR ERV1 0 403 295 2317 98 0 0 chr1 202881137 202881433 -79312231 - AluSg SINE Alu -14 296 1 1854 151 39 0 chr1 202882095 202882379 -79311285 + AluJb SINE Alu 3 297 -15 816 255 148 0 chr1 202882410 202882626 -79311038 + MIR SINE MIR 5 252 -10 1180 272 102 27 chr1 202882672 202883084 -79310580 - LTR16A LTR ERVL -6 444 2 34 42 0 0 chr1 202883245 202883293 -79310371 + AT_rich Low_complexity Low_complexity 1 48 0 811 144 0 0 chr1 202883294 202883412 -79310252 - FLAM_C SINE Alu -15 118 1 2272 88 3 0 chr1 202883662 202883959 -79309705 + AluSx SINE Alu 1 298 -14 524 236 47 47 chr1 202883963 202884111 -79309553 - MIR SINE MIR -100 162 15 667 177 9 0 chr1 202884601 202884710 -79308954 + MER21B LTR ERV1 388 497 -366 293 204 0 0 chr1 202884710 202884759 -79308905 - MER7A DNA MER2_type 0 346 298 828 180 0 0 chr1 202884761 202884900 -79308764 + FLAM_C SINE Alu 3 141 -2 1128 129 11 6 chr1 202884906 202885084 -79308580 - MER7A DNA MER2_type -41 305 127 1092 142 147 0 chr1 202885085 202885310 -79308354 - Tigger2 DNA MER2_type -10 2708 2451 4015 134 40 47 chr1 202885389 202885801 -79307863 - Tigger2 DNA MER2_type -1974 744 338 746 169 0 0 chr1 202885801 202885937 -79307727 - L1PB3 LINE L1 0 6154 6019 4015 134 40 47 chr1 202885937 202886272 -79307392 - Tigger2 DNA MER2_type -2380 338 2 780 136 32 0 chr1 202886272 202886396 -79307268 - MER7A DNA MER2_type -220 126 1 1612 176 48 21 chr1 202886396 202886725 -79306939 + MER21B LTR ERV1 496 833 -30 774 215 154 14 chr1 202886765 202886979 -79306685 + MIR SINE MIR 3 246 -16 263 91 0 23 chr1 202889071 202889115 -79304549 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2341 84 13 3 chr1 202890036 202890345 -79303319 + AluSx SINE Alu 1 312 0 630 191 101 32 chr1 202890450 202890638 -79303026 + MER106A DNA MER1_type 30 230 -6 759 187 0 22 chr1 202890638 202890772 -79302892 + FLAM_A SINE Alu 1 131 -2 1940 99 0 4 chr1 202891751 202892004 -79301660 - AluSq SINE Alu -18 295 44 30 27 0 0 chr1 202893927 202893964 -79299700 + AT_rich Low_complexity Low_complexity 1 37 0 2023 99 55 0 chr1 202894042 202894335 -79299329 + AluY SINE Alu 1 309 -2 4363 163 146 54 chr1 202894636 202895257 -79298407 + Charlie1a DNA MER1_type 1 563 -2198 2083 114 0 7 chr1 202895257 202895546 -79298118 - AluSx SINE Alu -14 298 12 4363 163 146 54 chr1 202895546 202896205 -79297459 + Charlie1a DNA MER1_type 563 1451 -4 2423 83 0 0 chr1 202896217 202896517 -79297147 - AluSc SINE Alu -9 300 1 194 347 21 21 chr1 202896545 202896640 -79297024 - MIR SINE MIR -78 130 36 761 189 0 0 chr1 202897768 202897900 -79295764 + FLAM_C SINE Alu 2 133 0 21 0 0 0 chr1 202898548 202898569 -79295095 + AT_rich Low_complexity Low_complexity 1 21 0 2108 102 36 13 chr1 202898711 202899057 -79294607 + AluSx SINE Alu 1 353 0 24 77 0 0 chr1 202899408 202899460 -79294204 + AT_rich Low_complexity Low_complexity 1 52 0 2128 100 13 13 chr1 202899597 202899896 -79293768 + AluSx SINE Alu 3 301 -11 631 180 19 71 chr1 202900543 202900754 -79292910 + L1MC5 LINE L1 7725 7924 -37 851 224 15 35 chr1 202901186 202901387 -79292277 + MIR SINE MIR 4 200 -62 873 118 8 0 chr1 202901387 202901514 -79292150 + AluSg/x SINE Alu 176 303 -9 220 35 0 0 chr1 202901521 202901550 -79292114 + MIR SINE MIR 210 238 -24 525 238 114 42 chr1 202901783 202901976 -79291688 - MIR SINE MIR -1 261 55 24 0 0 0 chr1 202902336 202902360 -79291304 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr1 203005182 203005206 -79188458 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 215 317 125 0 chr1 203005422 203005526 -79188138 + L2 LINE L2 3197 3313 0 584 206 163 0 chr1 203006025 203006166 -79187498 - MER5A DNA MER1_type 0 189 26 1132 228 23 0 chr1 203006315 203006534 -79187130 + MER58A DNA MER1_type 1 224 0 2377 97 7 0 chr1 203007137 203007447 -79186217 - AluSp SINE Alu 0 313 2 213 39 0 0 chr1 203007510 203007536 -79186128 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1791 173 0 11 chr1 203007539 203007823 -79185841 - AluJb SINE Alu -31 281 1 523 244 204 20 chr1 203008443 203008644 -79185020 + MIR SINE MIR 23 260 -2 2348 106 0 0 chr1 203008960 203009263 -79184401 - AluSx SINE Alu -7 305 3 261 214 0 57 chr1 203009273 203009343 -79184321 - MIR SINE MIR -70 192 127 425 219 0 38 chr1 203009353 203009458 -79184206 - MIR SINE MIR -70 192 92 322 265 146 23 chr1 203009728 203009947 -79183717 - L2 LINE L2 -69 3244 2999 1709 60 28 0 chr1 203009947 203010164 -79183500 - THE1A LTR MaLR -132 223 1 2883 150 59 37 chr1 203010638 203011177 -79182487 - MER21A LTR ERV1 -5 926 376 758 113 258 65 chr1 203011182 203011314 -79182350 - MER21A LTR ERV1 -667 264 159 2460 86 0 0 chr1 203011314 203011615 -79182049 - AluSx SINE Alu -11 301 1 758 113 258 65 chr1 203011615 203011668 -79181996 - MER21A LTR ERV1 -772 159 43 22 80 0 0 chr1 203011765 203011815 -79181849 + AT_rich Low_complexity Low_complexity 1 50 0 542 235 94 42 chr1 203011916 203012038 -79181626 - L1MEd LINE L1 -4722 1588 1474 3115 155 27 62 chr1 203012038 203012672 -79180992 - LTR9 LTR ERV1 0 612 1 542 235 94 42 chr1 203012672 203012988 -79180676 - L1MEd LINE L1 -4836 1474 1075 32 57 0 0 chr1 203013072 203013125 -79180539 + AT_rich Low_complexity Low_complexity 1 53 0 252 212 22 0 chr1 203013125 203013262 -79180402 + (TA)n Simple_repeat Simple_repeat 2 141 0 463 264 104 31 chr1 203013707 203013900 -79179764 + MIR SINE MIR 3 209 -53 26 30 0 0 chr1 203013917 203013950 -79179714 + AT_rich Low_complexity Low_complexity 1 33 0 1583 227 229 3 chr1 203014078 203014685 -79178979 + L2 LINE L2 1618 2361 -953 1026 142 170 5 chr1 203014685 203014903 -79178761 - L1 LINE L1 -2107 4039 3786 248 316 209 4 chr1 203015480 203015724 -79177940 - L3 LINE CR1 -200 1377 1084 939 203 0 0 chr1 203015747 203015910 -79177754 - FRAM SINE Alu -13 163 1 610 272 132 0 chr1 203016061 203016296 -79177368 - L3 LINE CR1 -708 869 604 220 253 163 6 chr1 203016320 203016486 -79177178 - L2 LINE L2 -14 3299 3108 411 299 139 10 chr1 203016518 203016570 -79177094 - L3 LINE CR1 -978 599 555 2223 75 18 4 chr1 203016570 203016851 -79176813 + AluSx SINE Alu 1 285 -27 411 299 139 10 chr1 203016851 203016992 -79176672 - L3 LINE CR1 -1022 555 381 261 0 0 0 chr1 203017010 203017039 -79176625 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 958 154 6 13 chr1 203017532 203017688 -79175976 + AluSg/x SINE Alu 137 291 -21 428 169 228 29 chr1 203017911 203018047 -79175617 + MER103 DNA DNA 3 165 -1 2339 87 7 3 chr1 203018297 203018596 -79175068 - AluSg SINE Alu -10 300 1 2257 108 3 0 chr1 203018806 203019113 -79174551 - AluSx SINE Alu -4 308 1 2191 169 55 5 chr1 203019418 203019815 -79173849 + MER47B DNA MER2_type 1 417 -1 25 31 0 0 chr1 203021335 203021367 -79172297 + AT_rich Low_complexity Low_complexity 1 32 0 394 296 40 8 chr1 203024253 203024378 -79169286 - L2 LINE L2 0 3313 3185 1814 148 20 30 chr1 203024981 203025278 -79168386 + AluJb SINE Alu 1 294 -18 285 247 0 65 chr1 203025286 203025363 -79168301 - L2 LINE L2 -24 3289 3218 2868 143 73 53 chr1 203025508 203026097 -79167567 + MER7C DNA MER2_type 1 601 -1 3183 234 152 37 chr1 203026724 203027743 -79165921 + HAL1 LINE L1 331 1556 -951 2124 121 14 7 chr1 203027743 203028040 -79165624 + AluSg SINE Alu 1 299 -11 3183 234 152 37 chr1 203028040 203028424 -79165240 + HAL1 LINE L1 1556 1895 -612 1537 139 13 0 chr1 203028535 203028772 -79164892 + AluSg/x SINE Alu 73 312 0 460 210 169 0 chr1 203028778 203028902 -79164762 + HAL1 LINE L1 2071 2215 -292 1126 157 8 63 chr1 203028933 203029294 -79164370 + MLT2D LTR ERVL 1 414 0 2135 109 36 13 chr1 203029359 203029662 -79164002 - AluSx SINE Alu -2 310 1 596 38 13 0 chr1 203029786 203029865 -79163799 + (TG)n Simple_repeat Simple_repeat 2 81 0 1114 90 14 0 chr1 203030371 203030516 -79163148 - AluSq SINE Alu -14 299 153 1774 103 8 4 chr1 203031612 203031854 -79161810 - AluSx SINE Alu -69 243 1 279 259 59 0 chr1 203032578 203032663 -79161001 - MIR SINE MIR -106 156 67 1455 267 124 22 chr1 203032663 203033292 -79160372 + MER115 DNA AcHobo 1 693 0 281 242 32 0 chr1 203033573 203033635 -79160029 + MIR SINE MIR 49 112 -150 2602 62 0 3 chr1 203034124 203034431 -79159233 - AluY SINE Alu -5 306 1 577 267 78 18 chr1 203034848 203035065 -79158599 + MIR SINE MIR 32 261 -1 501 266 86 7 chr1 203035444 203035624 -79158040 + MIR SINE MIR 20 211 -51 2453 85 0 3 chr1 203035669 203035976 -79157688 - AluSx SINE Alu -6 306 1 1052 255 221 18 chr1 203036867 203037416 -79156248 + L2 LINE L2 2392 2828 -485 2498 75 0 0 chr1 203037416 203037722 -79155942 + AluY SINE Alu 1 306 -5 1052 255 221 18 chr1 203037722 203037944 -79155720 + L2 LINE L2 2828 3313 0 247 243 86 0 chr1 203038505 203038575 -79155089 + MLT1L LTR MaLR 214 289 -326 26 82 0 0 chr1 203038624 203038685 -79154979 + AT_rich Low_complexity Low_complexity 1 61 0 254 277 62 39 chr1 203038693 203038823 -79154841 + MLT1L LTR MaLR 258 390 -225 1391 155 67 49 chr1 203039413 203039697 -79153967 - AluJo SINE Alu -23 289 1 23 0 0 0 chr1 203039875 203039898 -79153766 + AT_rich Low_complexity Low_complexity 1 23 0 1816 96 0 4 chr1 203040083 203040313 -79153351 - AluSx SINE Alu -83 229 1 424 165 33 55 chr1 203040423 203040514 -79153150 + AluS SINE Alu 2 90 -223 459 211 127 7 chr1 203040698 203040840 -79152824 + MIR SINE MIR 20 178 -84 2276 99 23 3 chr1 203043390 203043693 -79149971 + AluSg SINE Alu 1 309 -1 439 236 146 0 chr1 203043963 203044086 -79149578 + MER96 DNA MER1_type? 1 141 -34 479 176 66 0 chr1 203044193 203044284 -79149380 + LTR54 LTR ERV1 3 99 -411 342 282 83 28 chr1 203044284 203044561 -79149103 + MER57A LTR ERV1 99 403 0 207 0 0 0 chr1 203044665 203044688 -79148976 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1062 229 102 58 chr1 203044720 203045228 -79148436 - MLT1G1 LTR MaLR 0 595 4 540 231 77 67 chr1 203045240 203045539 -79148125 + L1ME4a LINE L1 5522 5823 -298 675 239 97 0 chr1 203045545 203045700 -79147964 + FRAM SINE Alu 1 170 -6 230 212 95 79 chr1 203045748 203045799 -79147865 + L1ME4a LINE L1 5870 5919 -202 2213 68 4 0 chr1 203045799 203046110 -79147554 - AluY SINE Alu 0 312 1 230 212 95 79 chr1 203046110 203046298 -79147366 + L1ME4a LINE L1 5919 6114 -7 325 288 80 40 chr1 203046305 203046430 -79147234 + L1ME LINE L1 5321 5450 -714 358 307 31 0 chr1 203046487 203046614 -79147050 + L1ME LINE L1 5554 5684 -437 294 248 277 59 chr1 203046632 203046831 -79146833 + Charlie8 DNA MER1_type 146 300 -2117 1602 170 0 7 chr1 203046831 203047113 -79146551 - AluJo SINE Alu -5 307 28 294 248 277 59 chr1 203047113 203047216 -79146448 + Charlie8 DNA MER1_type 300 514 -1903 374 305 61 79 chr1 203047273 203047552 -79146112 + L2 LINE L2 2999 3272 0 218 308 218 14 chr1 203047687 203047821 -79145843 + MIR SINE MIR 7 112 -150 1682 132 22 22 chr1 203047821 203048093 -79145571 + AluJb SINE Alu 9 280 -32 225 0 0 0 chr1 203048093 203048118 -79145546 + (GA)n Simple_repeat Simple_repeat 1 25 0 218 308 218 14 chr1 203048118 203048193 -79145471 + MIR SINE MIR 111 260 -2 203 328 75 17 chr1 203048797 203048971 -79144693 + L2 LINE L2 2228 2411 -903 290 327 10 20 chr1 203049271 203049321 -79144343 + MIR SINE MIR 55 104 -158 2105 114 3 7 chr1 203049321 203049619 -79144045 - AluSx SINE Alu -15 297 1 290 327 10 20 chr1 203049619 203049669 -79143995 + MIR SINE MIR 104 154 -108 2240 118 64 14 chr1 203049757 203050114 -79143550 + THE1C LTR MaLR 1 375 0 296 263 59 26 chr1 203050190 203050342 -79143322 + L1MC/D LINE L1 4490 4646 -1500 1399 160 0 8 chr1 203050342 203050586 -79143078 - AluJo SINE Alu -16 296 55 1974 132 0 13 chr1 203051225 203051528 -79142136 - AluJo SINE Alu -13 299 1 268 265 175 99 chr1 203052251 203052583 -79141081 + L2 LINE L2 2911 3267 -5 402 271 92 43 chr1 203052804 203053011 -79140653 + L1MC/D LINE L1 5576 5792 -2016 1682 166 10 22 chr1 203053027 203053340 -79140324 + AluJo SINE Alu 1 309 -3 2186 100 0 10 chr1 203053342 203053652 -79140012 + AluSg1 SINE Alu 1 307 -2 235 371 40 0 chr1 203059205 203059329 -79134335 - L2 LINE L2 -210 3062 2934 265 314 137 0 chr1 203060426 203060528 -79133136 - L2 LINE L2 -2 3270 3155 * 281 329 12 0 chr1 203060522 203060607 -79133057 - L3 LINE CR1 -81 1496 1411 220 235 0 0 chr1 203061030 203061081 -79132583 - MIR SINE MIR -30 232 182 418 268 10 0 chr1 203061276 203061373 -79132291 - MIR SINE MIR -67 141 44 572 263 26 27 chr1 203061771 203061998 -79131666 - MIR SINE MIR -21 241 15 197 354 69 0 chr1 203062755 203062885 -79130779 - MIR SINE MIR -73 189 51 410 320 77 13 chr1 203063972 203064206 -79129458 - MIR SINE MIR -2 260 12 228 67 0 0 chr1 203064893 203064923 -79128741 + (CA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr1 203065467 203065491 -79128173 + GC_rich Low_complexity Low_complexity 1 24 0 507 328 83 10 chr1 203065849 203066053 -79127611 - MIR SINE MIR -42 220 2 352 274 113 0 chr1 203066178 203066284 -79127380 - MIR3 SINE MIR -6 202 85 185 220 120 40 chr1 203067447 203067547 -79126117 - L2 LINE L2 -335 2978 2871 * 851 280 228 25 chr1 203067529 203067829 -79125835 - L2 LINE L2 -12 3301 3063 1849 188 51 3 chr1 203067829 203068201 -79125463 - MLT1B LTR MaLR 0 390 1 851 280 228 25 chr1 203068201 203069147 -79124517 - L2 LINE L2 -250 3063 1796 183 322 23 0 chr1 203069206 203069293 -79124371 - L2 LINE L2 -1655 1659 1571 255 213 253 0 chr1 203069625 203069775 -79123889 - L2 LINE L2 -2926 388 201 1101 283 113 26 chr1 203069962 203070641 -79123023 - L2 LINE L2 -1281 2033 1296 1638 167 14 18 chr1 203071397 203071704 -79121960 + AluJo SINE Alu 1 306 0 203 381 26 1 chr1 203071754 203071878 -79121786 - MIR SINE MIR -79 129 2 232 204 0 19 chr1 203072182 203072236 -79121428 - L1MC1 LINE L1 -289 6044 5992 2101 132 0 19 chr1 203072302 203072620 -79121044 + AluSx SINE Alu 1 312 0 243 138 17 69 chr1 203072784 203072842 -79120822 - MIR SINE MIR -63 145 91 316 39 0 39 chr1 203073489 203073541 -79120123 + (TG)n Simple_repeat Simple_repeat 1 50 0 359 265 20 31 chr1 203073682 203073780 -79119884 + MIR3 SINE MIR 65 161 -47 999 303 105 16 chr1 203073988 203074437 -79119227 + LTR33 LTR ERVL 33 521 0 253 155 28 70 chr1 203074876 203074947 -79118717 + MIR SINE MIR 152 219 -43 305 267 0 12 chr1 203075966 203076052 -79117612 + L2 LINE L2 2952 3036 -277 1758 312 105 8 chr1 203076053 203076684 -79116980 + MER115 DNA AcHobo 2 693 0 557 267 131 4 chr1 203076684 203076920 -79116744 + L2 LINE L2 3048 3313 0 22 70 0 0 chr1 203077750 203077793 -79115871 + GC_rich Low_complexity Low_complexity 1 43 0 184 26 0 103 chr1 203077808 203077847 -79115817 + (CGGGGG)n Simple_repeat Simple_repeat 1 35 0 192 179 0 0 chr1 203077971 203078010 -79115654 + (CTG)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr1 203078217 203078254 -79115410 + GC_rich Low_complexity Low_complexity 1 37 0 216 348 22 0 chr1 203079150 203079239 -79114425 - MIR SINE MIR 0 262 172 351 276 138 0 chr1 203081899 203082051 -79111613 - MIR3 SINE MIR -19 189 17 1345 140 73 22 chr1 203082476 203082901 -79110763 - LTR54 LTR ERV1 0 510 1 2141 210 59 16 chr1 203082902 203083448 -79110216 - MER31-int LTR ERV1 -394 7143 4175 5190 196 80 68 chr1 203083496 203084123 -79109541 - MER31-int LTR ERV1 -511 5820 5202 541 127 0 13 chr1 203084123 203084236 -79109428 + AluSg/x SINE Alu 205 309 0 5190 196 80 68 chr1 203084236 203085493 -79108171 - MER31-int LTR ERV1 -1129 5202 3961 1691 169 6 19 chr1 203085493 203085807 -79107857 + AluJo SINE Alu 3 312 0 5190 196 80 68 chr1 203085807 203086560 -79107104 - MER31-int LTR ERV1 -2370 3961 1554 478 181 94 35 chr1 203086558 203086729 -79106935 - MER31-int LTR ERV1 -3013 1923 1743 * 198 318 126 7 chr1 203086730 203086881 -79106783 - L2 LINE L2 -465 2849 2681 1947 160 108 43 chr1 203087788 203088187 -79105477 - MSTB LTR MaLR -1 425 1 612 259 78 29 chr1 203091545 203091788 -79101876 + MER112 DNA MER1_type 1 255 -1 354 262 54 69 chr1 203092440 203092600 -79101064 + MIR SINE MIR 35 192 -58 183 243 0 0 chr1 203094703 203094740 -79098924 - L2 LINE L2 -575 2739 2703 2290 108 3 0 chr1 203095558 203095853 -79097811 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 203096140 203096161 -79097503 + AT_rich Low_complexity Low_complexity 1 21 0 898 156 7 0 chr1 203096161 203096296 -79097368 - AluJo SINE Alu -176 136 1 591 291 76 24 chr1 203096842 203097052 -79096612 - MIR SINE MIR -30 232 12 206 269 77 0 chr1 203097693 203097745 -79095919 - L2 LINE L2 0 3313 3258 247 209 115 135 chr1 203097887 203097924 -79095740 - MIR SINE MIR -116 146 110 2150 102 3 24 chr1 203097924 203098219 -79095445 + AluSg SINE Alu 20 308 -2 247 209 115 135 chr1 203098219 203098329 -79095335 - MIR SINE MIR -152 110 2 186 284 40 40 chr1 203100204 203100278 -79093386 - L3 LINE CR1 -1420 157 84 2175 112 0 13 chr1 203100285 203100589 -79093075 - AluSx SINE Alu -12 300 1 251 83 0 21 chr1 203100886 203100934 -79092730 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 342 202 30 81 chr1 203100938 203101037 -79092627 + MIR3 SINE MIR 114 207 -1 2287 88 40 0 chr1 203101266 203101562 -79092102 - AluSq SINE Alu -5 308 1 422 242 0 11 chr1 203102216 203102307 -79091357 - MIR SINE MIR -153 109 20 336 329 66 20 chr1 203102435 203102587 -79091077 + MIR SINE MIR 89 247 -15 423 282 30 23 chr1 203103097 203103228 -79090436 + MIR SINE MIR 13 144 -118 2152 130 3 0 chr1 203103237 203103544 -79090120 - AluSq SINE Alu -5 308 1 2311 104 0 3 chr1 203103550 203103849 -79089815 - AluY SINE Alu -13 298 1 302 247 54 21 chr1 203103870 203103963 -79089701 - MIR SINE MIR -10 252 157 210 71 0 0 chr1 203103965 203103993 -79089671 + (TTA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr1 203106837 203106862 -79086802 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr1 203106993 203107021 -79086643 + GC_rich Low_complexity Low_complexity 1 28 0 453 325 78 12 chr1 203107934 203108269 -79085395 + L1ME4a LINE L1 5517 5873 -248 397 249 123 23 chr1 203108452 203108713 -79084951 + L1ME4a LINE L1 5617 5903 -218 324 66 82 0 chr1 203108748 203108809 -79084855 + L1MB4 LINE L1 6115 6180 0 31 44 0 0 chr1 203109140 203109185 -79084479 + AT_rich Low_complexity Low_complexity 1 45 0 2265 93 10 13 chr1 203109487 203109798 -79083866 - AluSg SINE Alu 0 310 1 249 227 72 31 chr1 203109835 203109932 -79083732 + MIR SINE MIR 46 146 -62 370 306 45 25 chr1 203110028 203110185 -79083479 - MIR SINE MIR 0 262 103 453 247 175 35 chr1 203110612 203110831 -79082833 - MIR3 SINE MIR -1 261 12 968 204 48 0 chr1 203111661 203111867 -79081797 - MIR SINE MIR -23 239 24 2324 110 0 0 chr1 203112085 203112386 -79081278 + AluSx SINE Alu 1 301 -11 190 274 16 65 chr1 203112687 203112749 -79080915 - MIR SINE MIR -112 96 38 336 287 73 47 chr1 203113389 203113539 -79080125 - MIR SINE MIR -2 260 107 355 285 195 30 chr1 203113880 203114080 -79079584 + MIR SINE MIR 29 261 -1 216 308 63 44 chr1 203114318 203114477 -79079187 + MIR SINE MIR 57 218 -44 343 191 83 12 chr1 203114573 203114657 -79079007 - MER5A DNA MER1_type -84 105 16 1167 173 62 62 chr1 203114680 203114957 -79078707 + MER33 DNA MER1_type 1 282 -2303 2322 53 7 18 chr1 203114957 203115264 -79078400 + AluY SINE Alu 1 304 0 1167 173 62 62 chr1 203115264 203115308 -79078356 + MER33 DNA MER1_type 281 324 0 689 208 19 6 chr1 203115347 203115506 -79078158 - L1PA16 LINE L1 -24 6142 5982 183 289 0 0 chr1 203115568 203115613 -79078051 + L2 LINE L2 3248 3292 -21 1985 114 57 7 chr1 203117669 203117966 -79075698 + AluSx SINE Alu 1 312 0 2020 133 19 3 chr1 203118369 203118686 -79074978 + L1PA13 LINE L1 5839 6160 -3 234 31 0 0 chr1 203119592 203119624 -79074040 + Alu SINE Alu 261 292 -8 450 252 2 1 chr1 203119648 203119778 -79073886 - L1ME1 LINE L1 -1 6117 5980 1993 138 7 7 chr1 203119778 203120074 -79073590 + AluSx SINE Alu 1 296 -16 2131 191 33 96 chr1 203120082 203120501 -79073163 - L1ME1 LINE L1 -582 5516 5072 1812 170 0 6 chr1 203120501 203120813 -79072851 - AluSx SINE Alu -2 310 1 2131 191 33 96 chr1 203120813 203120964 -79072700 - L1ME1 LINE L1 -1026 5072 4913 1908 157 13 3 chr1 203120964 203121269 -79072395 - AluJo SINE Alu -4 308 1 2131 191 33 96 chr1 203121269 203121617 -79072047 - L1ME1 LINE L1 -1185 4913 4657 * 2253 144 174 2 chr1 203121604 203122070 -79071594 - L1MB7 LINE L1 -16 6168 5623 2232 106 0 0 chr1 203122075 203122391 -79071273 - AluSq SINE Alu 0 316 1 568 196 19 44 chr1 203122417 203122575 -79071089 - L1ME1 LINE L1 -1428 4652 4499 25 31 0 0 chr1 203122583 203122615 -79071049 + AT_rich Low_complexity Low_complexity 1 32 0 281 301 136 0 chr1 203123362 203123465 -79070199 - MLT1K LTR MaLR -343 245 129 2035 133 7 10 chr1 203124405 203124707 -79068957 + AluJo SINE Alu 1 301 -11 247 314 43 14 chr1 203124849 203124919 -79068745 - L2 LINE L2 -21 3251 3180 477 179 54 9 chr1 203125075 203125187 -79068477 + MER69 DNA AcHobo 2365 2481 -45 273 298 163 0 chr1 203125262 203125440 -79068224 - L2 LINE L2 -72 3241 3035 2351 107 0 0 chr1 203125489 203125780 -79067884 - AluSx SINE Alu -21 291 1 252 255 163 26 chr1 203125935 203126088 -79067576 + L2 LINE L2 2713 2886 -428 1280 193 86 94 chr1 203126681 203127096 -79066568 - MLT1C LTR MaLR -5 462 50 2076 137 0 17 chr1 203127096 203127396 -79066268 - AluJb SINE Alu -13 299 5 1280 193 86 94 chr1 203127396 203127446 -79066218 - MLT1C LTR MaLR -417 50 1 1117 205 58 26 chr1 203127479 203127791 -79065873 - MER2 DNA MER2_type -23 322 1 208 296 92 31 chr1 203127794 203127892 -79065772 + L2 LINE L2 3002 3105 -208 1500 239 52 42 chr1 203127991 203128130 -79065534 - L1ME1 LINE L1 -3215 2865 2729 1598 200 3 28 chr1 203128130 203128450 -79065214 - AluJo SINE Alu 0 312 1 1500 239 52 42 chr1 203128450 203128728 -79064936 - L1ME1 LINE L1 -3351 2729 2438 2445 78 0 31 chr1 203128728 203129049 -79064615 - AluY SINE Alu 0 311 1 1500 239 52 42 chr1 203129049 203129228 -79064436 - L1ME1 LINE L1 -3642 2438 2262 308 309 9 64 chr1 203129305 203129415 -79064249 + L1MC4 LINE L1 6616 6719 -1323 * 332 300 44 0 chr1 203129333 203129423 -79064241 - L1MC4 LINE L1 -1334 6708 6615 383 256 35 0 chr1 203129428 203129514 -79064150 - L1MC4 LINE L1 -1339 6703 6615 305 309 21 31 chr1 203129485 203129582 -79064082 + L1MC4 LINE L1 6614 6709 -1333 * 210 71 0 0 chr1 203129586 203129614 -79064050 + (TA)n Simple_repeat Simple_repeat 1 28 0 906 248 49 41 chr1 203129616 203129980 -79063684 - L1ME1 LINE L1 -3814 2281 1941 1091 162 9 57 chr1 203129980 203130209 -79063455 + MER20 DNA MER1_type 1 218 -1 906 248 49 41 chr1 203130209 203130352 -79063312 - L1ME1 LINE L1 -4154 1941 1801 703 166 97 6 chr1 203130384 203130559 -79063105 + MER58A DNA MER1_type 34 224 0 2563 268 72 58 chr1 203130559 203132218 -79061446 - L1ME1 LINE L1 -4452 1809 77 387 0 0 0 chr1 203132218 203132261 -79061403 + (TG)n Simple_repeat Simple_repeat 2 44 0 2563 268 72 58 chr1 203132261 203132336 -79061328 - L1ME1 LINE L1 -6184 77 5 1220 169 14 5 chr1 203132542 203132749 -79060915 + MER63A DNA MER1_type 1 209 -1 1832 158 14 7 chr1 203132970 203133262 -79060402 - AluJo SINE Alu -18 294 1 876 281 73 97 chr1 203133263 203133716 -79059948 + LTR47B LTR ERVL 11 443 0 21 0 0 0 chr1 203133823 203133844 -79059820 + AT_rich Low_complexity Low_complexity 1 21 0 2381 83 3 0 chr1 203134198 203134486 -79059178 - AluSg SINE Alu -16 294 6 217 180 40 20 chr1 203134946 203134996 -79058668 + G-rich Low_complexity Low_complexity 5 55 0 23 33 0 0 chr1 203135880 203135910 -79057754 + GC_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr1 203136294 203136316 -79057348 + (CG)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr1 203138907 203138935 -79054729 + (TA)n Simple_repeat Simple_repeat 1 28 0 183 274 104 47 chr1 203144326 203144432 -79049232 + MIR3 SINE MIR 10 121 -87 927 119 0 0 chr1 203144926 203145044 -79048620 - FLAM_C SINE Alu -25 118 1 526 300 72 33 chr1 203146209 203146389 -79047275 - MIR SINE MIR -39 223 37 1536 143 4 0 chr1 203146486 203146747 -79046917 - AluJo SINE Alu 0 342 81 198 191 0 0 chr1 203146958 203147005 -79046659 + (TG)n Simple_repeat Simple_repeat 2 48 0 234 253 0 36 chr1 203147011 203147094 -79046570 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 187 272 19 0 chr1 203147131 203147234 -79046430 + (TATATG)n Simple_repeat Simple_repeat 2 106 0 1895 149 45 0 chr1 203147705 203147994 -79045670 - AluSx SINE Alu -5 307 6 4779 207 51 92 chr1 203198750 203199004 -78994660 + L1MD3 LINE L1 5039 5302 -844 2380 111 0 6 chr1 203199004 203199319 -78994345 + AluSq SINE Alu 1 313 0 4779 207 51 92 chr1 203199319 203200829 -78992835 + L1MD3 LINE L1 5302 5198 -948 844 143 0 0 chr1 203200829 203200962 -78992702 - FLAM_C SINE Alu 0 133 1 4779 207 51 92 chr1 203200962 203201160 -78992504 + L1MD3 LINE L1 5197 5402 -744 238 278 56 12 chr1 203201205 203201367 -78992297 - L1ME LINE L1 -691 5430 5262 683 250 0 0 chr1 203203566 203203702 -78989962 + MIR SINE MIR 7 142 -120 311 290 195 30 chr1 203204052 203204252 -78989412 + MIR SINE MIR 29 261 -1 194 308 63 44 chr1 203204490 203204649 -78989015 + MIR SINE MIR 57 218 -44 318 238 71 0 chr1 203204745 203204829 -78988835 - MER5A DNA MER1_type -84 105 16 1088 176 62 62 chr1 203204852 203205129 -78988535 + MER33 DNA MER1_type 1 282 -2303 2314 56 7 18 chr1 203205129 203205436 -78988228 + AluY SINE Alu 1 304 0 1088 176 62 62 chr1 203205436 203205480 -78988184 + MER33 DNA MER1_type 281 324 0 709 208 19 6 chr1 203205519 203205678 -78987986 - L1PA16 LINE L1 -24 6142 5982 2001 114 57 7 chr1 203207841 203208138 -78985526 + AluSx SINE Alu 1 312 0 1911 133 19 3 chr1 203208541 203208858 -78984806 + L1PA13 LINE L1 5839 6160 -3 203 147 0 0 chr1 203209692 203209726 -78983938 + MIR SINE MIR 76 109 -153 264 325 0 0 chr1 203209883 203209960 -78983704 + L2 LINE L2 3236 3312 -1 433 316 16 32 chr1 203210505 203210692 -78982972 - L3 LINE CR1 -2 1575 1392 1759 166 48 3 chr1 203210975 203211265 -78982399 - AluJb SINE Alu -9 303 1 511 137 0 0 chr1 203211298 203211371 -78982293 + tRNA-Val-GTT tRNA tRNA 1 73 -3 285 77 0 0 chr1 203211389 203211428 -78982236 + Alu SINE Alu 1 39 -264 2806 23 0 0 chr1 203211497 203211804 -78981860 + AluY SINE Alu 1 307 -4 2310 88 0 14 chr1 203211818 203212112 -78981552 + AluSc SINE Alu 1 290 -19 463 248 151 41 chr1 203212210 203212415 -78981249 + MLT1H LTR MaLR 19 244 -334 385 250 137 0 chr1 203212593 203212717 -78980947 + MIR SINE MIR 119 259 -3 2226 77 27 3 chr1 203212872 203213170 -78980494 - AluY SINE Alu -6 305 1 25 65 0 0 chr1 203213222 203213268 -78980396 + AT_rich Low_complexity Low_complexity 1 46 0 305 211 22 0 chr1 203213316 203213406 -78980258 - L1M4 LINE L1 -906 5240 5149 322 278 90 85 chr1 203213416 203213802 -78979862 - L1MEc LINE L1 -4692 1704 1321 1854 147 32 3 chr1 203213802 203214087 -78979577 - AluJb SINE Alu -19 293 1 322 278 90 85 chr1 203214087 203214416 -78979248 - L1MEc LINE L1 -5075 1321 982 2447 93 0 7 chr1 203214416 203214726 -78978938 - AluSq SINE Alu -5 308 1 322 278 90 85 chr1 203214726 203214913 -78978751 - L1MEc LINE L1 -5414 982 797 281 333 22 29 chr1 203215338 203215476 -78978188 + L1ME4a LINE L1 5539 5675 -495 444 195 11 0 chr1 203215581 203215668 -78977996 + MER3 DNA MER1_type 1 88 -121 252 195 0 0 chr1 203215652 203215693 -78977971 - MER33 DNA MER1_type -283 41 1 * 303 187 80 40 chr1 203216281 203216356 -78977308 - L1MB5 LINE L1 -10 6164 6087 3146 221 60 8 chr1 203216519 203217312 -78976352 + Charlie1a DNA MER1_type 8 842 -613 454 133 31 20 chr1 203217315 203217413 -78976251 + Charlie1a DNA MER1_type 1156 1254 -201 385 242 26 98 chr1 203217423 203217576 -78976088 - Charlie1a DNA MER1_type -1312 143 2 324 261 59 150 chr1 203217577 203217696 -78975968 + L1ME4a LINE L1 5648 5776 -345 1619 149 47 53 chr1 203217696 203217997 -78975667 + AluJo SINE Alu 5 303 -9 324 261 59 150 chr1 203217997 203218329 -78975335 + L1ME4a LINE L1 5776 6059 -62 261 0 0 0 chr1 203218512 203218541 -78975123 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1937 140 11 4 chr1 203218541 203218819 -78974845 - AluJb SINE Alu -32 280 1 306 344 62 12 chr1 203218964 203219208 -78974456 + L1ME LINE L1 5523 5778 -343 21 71 0 0 chr1 203219317 203219359 -78974305 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr1 203219425 203219465 -78974199 + AT_rich Low_complexity Low_complexity 1 40 0 1762 163 108 43 chr1 203220109 203220508 -78973156 - MSTB LTR MaLR -1 425 1 504 259 78 29 chr1 203223871 203224114 -78969550 + MER112 DNA MER1_type 1 255 -1 349 255 54 69 chr1 203224766 203224926 -78968738 + MIR SINE MIR 35 192 -58 198 318 57 47 chr1 203226315 203226507 -78967157 - L2 LINE L2 -460 2854 2661 2298 108 3 0 chr1 203227882 203228177 -78965487 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 203228464 203228485 -78965179 + AT_rich Low_complexity Low_complexity 1 21 0 901 156 7 0 chr1 203228485 203228620 -78965044 - AluJo SINE Alu -176 136 1 553 291 76 24 chr1 203229166 203229376 -78964288 - MIR SINE MIR -30 232 12 196 269 77 0 chr1 203230017 203230069 -78963595 - L2 LINE L2 0 3313 3258 215 209 115 135 chr1 203230211 203230248 -78963416 - MIR SINE MIR -116 146 110 2157 102 3 24 chr1 203230248 203230543 -78963121 + AluSg SINE Alu 20 308 -2 215 209 115 135 chr1 203230543 203230653 -78963011 - MIR SINE MIR -152 110 2 2186 112 0 13 chr1 203232609 203232913 -78960751 - AluSx SINE Alu -12 300 1 251 83 0 21 chr1 203233210 203233258 -78960406 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 321 202 30 81 chr1 203233262 203233361 -78960303 + MIR3 SINE MIR 114 207 -1 2304 88 40 0 chr1 203233590 203233886 -78959778 - AluSq SINE Alu -5 308 1 396 242 0 11 chr1 203234540 203234631 -78959033 - MIR SINE MIR -153 109 20 320 329 66 20 chr1 203234759 203234911 -78958753 + MIR SINE MIR 89 247 -15 389 282 30 23 chr1 203235421 203235552 -78958112 + MIR SINE MIR 13 144 -118 2158 130 3 0 chr1 203235561 203235868 -78957796 - AluSq SINE Alu -5 308 1 2320 104 0 3 chr1 203235874 203236173 -78957491 - AluY SINE Alu -13 298 1 286 247 54 21 chr1 203236194 203236287 -78957377 - MIR SINE MIR -10 252 157 210 71 0 0 chr1 203236289 203236317 -78957347 + (TTA)n Simple_repeat Simple_repeat 2 29 0 262 314 137 0 chr1 203239756 203239858 -78953806 - L2 LINE L2 -2 3270 3155 * 273 329 12 0 chr1 203239852 203239937 -78953727 - L3 LINE CR1 -81 1496 1411 214 235 0 0 chr1 203240360 203240411 -78953253 - MIR SINE MIR -30 232 182 410 268 10 0 chr1 203240606 203240703 -78952961 - MIR SINE MIR -67 141 44 561 263 26 27 chr1 203241101 203241328 -78952336 - MIR SINE MIR -21 241 15 184 339 100 31 chr1 203242085 203242215 -78951449 - MIR SINE MIR -73 189 51 381 303 90 26 chr1 203243302 203243536 -78950128 - MIR SINE MIR -2 260 12 228 67 0 0 chr1 203244223 203244253 -78949411 + (CA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr1 203244797 203244821 -78948843 + GC_rich Low_complexity Low_complexity 1 24 0 503 328 83 10 chr1 203245179 203245383 -78948281 - MIR SINE MIR -42 220 2 343 274 113 0 chr1 203245508 203245614 -78948050 - MIR3 SINE MIR -6 202 85 883 269 227 27 chr1 203246863 203247159 -78946505 - L2 LINE L2 -16 3297 3061 1643 188 51 3 chr1 203247159 203247531 -78946133 - MLT1B LTR MaLR 0 390 1 883 269 227 27 chr1 203247531 203248477 -78945187 - L2 LINE L2 -252 3061 1796 188 322 23 0 chr1 203248536 203248623 -78945041 - L2 LINE L2 -1655 1659 1571 241 201 191 81 chr1 203248955 203249164 -78944500 - L2 LINE L2 -2926 388 157 182 237 0 0 chr1 203249892 203249930 -78943734 - MIR SINE MIR -108 154 117 299 325 41 0 chr1 203254795 203254918 -78938746 - L2 LINE L2 -211 3061 2934 214 324 144 18 chr1 203254948 203255059 -78938605 - L2 LINE L2 -9 3304 3180 526 218 127 7 chr1 203255463 203255605 -78938059 + MIR SINE MIR 20 178 -84 559 202 0 59 chr1 203258034 203258153 -78935511 + AluJo SINE Alu 104 215 -97 192 179 0 0 chr1 203258289 203258328 -78935336 + (CTG)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr1 203258535 203258572 -78935092 + GC_rich Low_complexity Low_complexity 1 37 0 239 292 45 22 chr1 203259468 203259557 -78934107 - MIR SINE MIR 0 262 172 188 220 200 73 chr1 203261352 203261502 -78932162 - MIR SINE MIR -13 249 81 185 242 141 50 chr1 203261567 203261666 -78931998 - L2 LINE L2 -286 2986 2879 183 261 130 14 chr1 203261691 203261760 -78931904 + L2 LINE L2 3212 3288 -25 363 276 138 0 chr1 203262217 203262369 -78931295 - MIR3 SINE MIR -19 189 17 1321 141 60 6 chr1 203262794 203263219 -78930445 - LTR54 LTR ERV1 0 510 1 2091 210 59 16 chr1 203263220 203263766 -78929898 - MER31-int LTR ERV1 -394 7143 4175 5161 191 82 71 chr1 203263814 203264441 -78929223 - MER31-int LTR ERV1 -511 5820 5202 548 123 0 0 chr1 203264441 203264514 -78929150 + AluSg/x SINE Alu 205 277 -32 275 0 29 0 chr1 203264514 203264549 -78929115 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 5161 191 82 71 chr1 203264549 203265811 -78927853 - MER31-int LTR ERV1 -1129 5202 3956 1809 169 6 19 chr1 203265811 203266125 -78927539 + AluJo SINE Alu 3 312 0 5161 191 82 71 chr1 203266125 203266878 -78926786 - MER31-int LTR ERV1 -2375 3956 1554 496 181 94 35 chr1 203266876 203267047 -78926617 - MER31-int LTR ERV1 -3013 1923 1743 * 219 318 126 7 chr1 203267048 203267199 -78926465 - L2 LINE L2 -465 2849 2681 445 245 20 0 chr1 203267841 203267943 -78925721 - MLT1D LTR MaLR -399 106 3 880 308 52 52 chr1 203267948 203268131 -78925533 + L2 LINE L2 2035 2217 -1097 1561 148 104 7 chr1 203268131 203268409 -78925255 + AluJb SINE Alu 6 310 -2 880 308 52 52 chr1 203268409 203268663 -78925001 + L2 LINE L2 2216 2472 -842 2348 93 3 3 chr1 203268664 203268966 -78924698 - AluSx SINE Alu -10 302 1 251 269 20 97 chr1 203269066 203269381 -78924283 + L2 LINE L2 3003 3269 -44 361 304 105 33 chr1 203269594 203269775 -78923889 - MIR SINE MIR -2 260 67 1347 267 124 22 chr1 203269775 203270404 -78923260 + MER115 DNA AcHobo 1 693 0 305 263 42 0 chr1 203270685 203270767 -78922897 + MIR SINE MIR 49 137 -71 2614 62 0 3 chr1 203271236 203271543 -78922121 - AluY SINE Alu -5 306 1 666 267 78 18 chr1 203271960 203272177 -78921487 + MIR SINE MIR 32 261 -1 583 266 86 7 chr1 203272556 203272736 -78920928 + MIR SINE MIR 20 211 -51 2471 85 0 3 chr1 203272781 203273088 -78920576 - AluSx SINE Alu -6 306 1 330 109 0 0 chr1 203273796 203273842 -78919822 + Alu SINE Alu 245 290 -12 353 194 28 14 chr1 203273914 203273986 -78919678 - L1MD3 LINE L1 0 7995 7923 226 150 0 0 chr1 203274021 203274061 -78919603 - L1MC4 LINE L1 -270 7772 7733 306 105 0 18 chr1 203274931 203274988 -78918676 - L1MB3 LINE L1 -7 6176 6121 1680 132 88 18 chr1 203275520 203275792 -78917872 + AluJo SINE Alu 1 291 -21 31 68 0 0 chr1 203275856 203275915 -78917749 + AT_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr1 203276641 203276663 -78917001 + AT_rich Low_complexity Low_complexity 1 22 0 2143 118 3 3 chr1 203277427 203277723 -78915941 + AluSq SINE Alu 1 296 -17 222 301 102 38 chr1 203278747 203278933 -78914731 - L2 LINE L2 0 3313 3116 334 161 58 69 chr1 203278984 203279071 -78914593 - FLAM_A SINE Alu -11 122 37 21 82 0 0 chr1 203280212 203280261 -78913403 + AT_rich Low_complexity Low_complexity 1 49 0 632 231 30 47 chr1 203280396 203280565 -78913099 - MIR3 SINE MIR -7 201 36 2401 93 0 0 chr1 203280784 203281084 -78912580 + AluSc SINE Alu 1 300 -9 2333 100 0 13 chr1 203281092 203281403 -78912261 + AluSq SINE Alu 1 307 -6 2181 101 3 20 chr1 203281411 203281708 -78911956 + AluSx SINE Alu 1 292 -20 1751 167 14 18 chr1 203283437 203283744 -78909920 + AluJo SINE Alu 1 306 0 196 323 42 40 chr1 203283807 203283919 -78909745 - MIR SINE MIR -92 116 2 2381 83 3 0 chr1 203284309 203284597 -78909067 + AluSg SINE Alu 6 294 -16 21 0 0 0 chr1 203284951 203284972 -78908692 + AT_rich Low_complexity Low_complexity 1 21 0 876 281 73 97 chr1 203285079 203285532 -78908132 - LTR47B LTR ERVL 0 443 11 1782 164 14 7 chr1 203285533 203285825 -78907839 + AluJo SINE Alu 1 294 -18 216 264 0 0 chr1 203287289 203287342 -78906322 + T-rich Low_complexity Low_complexity 5 57 0 1685 164 63 3 chr1 203288642 203288929 -78904735 + AluJo SINE Alu 1 304 -8 1769 279 81 65 chr1 203288955 203289010 -78904654 + L1ME LINE L1 3293 3346 -2800 2053 117 13 17 chr1 203289010 203289308 -78904356 + AluSx SINE Alu 1 297 -15 1769 279 81 65 chr1 203289308 203289861 -78903803 + L1ME LINE L1 3346 3889 -2257 1951 164 0 0 chr1 203289861 203290153 -78903511 + AluJb SINE Alu 18 309 -3 1769 279 81 65 chr1 203290153 203290731 -78902933 + L1ME LINE L1 3889 4456 -1690 1917 151 30 0 chr1 203290731 203291029 -78902635 + AluJb SINE Alu 3 309 -3 1769 279 81 65 chr1 203291029 203291189 -78902475 + L1ME LINE L1 4456 4612 -1534 2197 119 3 0 chr1 203291189 203291484 -78902180 + AluSq SINE Alu 1 296 -17 1769 279 81 65 chr1 203291484 203291665 -78901999 + L1ME LINE L1 4612 4847 -1299 2439 74 3 0 chr1 203292485 203292784 -78900880 - AluY SINE Alu -11 300 1 295 214 125 30 chr1 203292804 203292972 -78900692 + L1ME4a LINE L1 5931 6114 -7 324 288 80 40 chr1 203292979 203293104 -78900560 + L1ME LINE L1 5321 5450 -714 368 291 34 0 chr1 203293171 203293288 -78900376 + L1ME LINE L1 5564 5684 -437 1689 170 0 7 chr1 203293505 203293787 -78899877 - AluJo SINE Alu -5 307 28 399 305 61 79 chr1 203293947 203294226 -78899438 + L2 LINE L2 2999 3272 0 255 284 240 34 chr1 203294361 203294495 -78899169 + MIR SINE MIR 7 112 -150 1791 132 22 22 chr1 203294495 203294767 -78898897 + AluJb SINE Alu 9 280 -32 225 0 0 0 chr1 203294767 203294792 -78898872 + (GA)n Simple_repeat Simple_repeat 1 25 0 255 284 240 34 chr1 203294792 203294860 -78898804 + MIR SINE MIR 111 252 -10 216 299 92 35 chr1 203295471 203295645 -78898019 + L2 LINE L2 2228 2411 -903 305 327 10 20 chr1 203295945 203295995 -78897669 + MIR SINE MIR 55 104 -158 2234 114 3 7 chr1 203295995 203296293 -78897371 - AluSx SINE Alu -15 297 1 305 327 10 20 chr1 203296293 203296343 -78897321 + MIR SINE MIR 104 154 -108 2211 118 64 14 chr1 203296431 203296788 -78896876 + THE1C LTR MaLR 1 375 0 290 257 59 26 chr1 203296864 203297016 -78896648 + L1MC4a LINE L1 4490 4646 -1500 1479 160 0 8 chr1 203297016 203297260 -78896404 - AluJo SINE Alu -16 296 55 2093 132 0 13 chr1 203297899 203298202 -78895462 - AluJo SINE Alu -13 299 1 280 238 184 108 chr1 203298912 203299244 -78894420 + L2 LINE L2 2911 3267 -5 381 288 127 23 chr1 203299465 203299688 -78893976 + L1MC4a LINE L1 5576 5774 -390 1720 157 19 32 chr1 203299688 203300001 -78893663 + AluJo SINE Alu 1 309 -3 2272 100 0 10 chr1 203300003 203300313 -78893351 + AluSg1 SINE Alu 1 307 -2 381 288 127 23 chr1 203300313 203300386 -78893278 + L1MC4a LINE L1 5698 5762 -402 525 237 63 53 chr1 203301070 203301260 -78892404 - MLT1H LTR MaLR -4 545 354 1749 100 0 9 chr1 203301492 203301723 -78891941 + AluSx SINE Alu 1 229 -83 23 0 0 0 chr1 203301908 203301931 -78891733 + AT_rich Low_complexity Low_complexity 1 23 0 1399 151 62 59 chr1 203302109 203302414 -78891250 + AluJo SINE Alu 1 306 -6 251 277 62 39 chr1 203302983 203303113 -78890551 - MLT1L LTR MaLR -225 390 258 26 82 0 0 chr1 203303121 203303182 -78890482 + AT_rich Low_complexity Low_complexity 1 61 0 253 243 86 0 chr1 203303231 203303301 -78890363 - MLT1L LTR MaLR -326 289 214 414 259 130 37 chr1 203303862 203304078 -78889586 - L2 LINE L2 0 3313 3078 2344 86 0 25 chr1 203304084 203304399 -78889265 - AluSx SINE Alu -5 307 1 435 262 25 41 chr1 203304564 203304735 -78888929 - L1MC/D LINE L1 -303 5818 5670 1508 169 38 8 chr1 203304745 203305006 -78888658 - Tigger3(Golem) DNA MER2_type 0 3029 2761 1219 173 0 0 chr1 203305653 203305844 -78887820 - AluSx SINE Alu -119 193 3 28 29 0 0 chr1 203305992 203306027 -78887637 + AT_rich Low_complexity Low_complexity 1 35 0 2385 86 0 0 chr1 203307591 203307895 -78885769 - AluY SINE Alu -7 304 1 37 39 0 0 chr1 203307900 203307951 -78885713 + AT_rich Low_complexity Low_complexity 1 51 0 983 147 19 6 chr1 203307963 203308119 -78885545 + FAM SINE Alu 11 168 -17 183 80 0 0 chr1 203308352 203308377 -78885287 + (TAA)n Simple_repeat Simple_repeat 2 26 0 534 254 71 30 chr1 203308404 203308573 -78885091 - MIR SINE MIR -44 218 43 593 292 32 55 chr1 203308970 203309282 -78884382 - L1ME LINE L1 -305 5816 5512 25 51 0 0 chr1 203309338 203309377 -78884287 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr1 203309686 203309729 -78883935 + AT_rich Low_complexity Low_complexity 1 43 0 276 219 0 94 chr1 203310282 203310378 -78883286 + L2 LINE L2 3227 3313 0 201 74 0 0 chr1 203310666 203310693 -78882971 + (TA)n Simple_repeat Simple_repeat 2 28 0 674 278 86 8 chr1 203311150 203311384 -78882280 + MIR SINE MIR 6 257 -5 584 284 23 51 chr1 203311421 203311636 -78882028 + L3 LINE CR1 1316 1524 -53 288 343 229 24 chr1 203312280 203312491 -78881173 - L2 LINE L2 -561 2753 2587 2329 91 3 0 chr1 203312491 203312787 -78880877 + AluSg SINE Alu 1 297 -13 288 343 229 24 chr1 203312787 203313086 -78880578 - L2 LINE L2 -727 2587 2138 200 313 61 73 chr1 203313261 203313452 -78880212 - L2 LINE L2 -1779 1535 1346 2787 23 0 0 chr1 203313452 203313762 -78879902 + AluY SINE Alu 1 310 -1 200 313 61 73 chr1 203313762 203313816 -78879848 - L2 LINE L2 -1968 1346 1293 1499 153 0 114 chr1 203314177 203314529 -78879135 - AluJo SINE Alu 0 312 1 1769 193 7 0 chr1 203314736 203315031 -78878633 + AluJb SINE Alu 1 297 -15 829 169 58 13 chr1 203315090 203315244 -78878420 + FRAM SINE Alu 1 158 -18 633 206 163 0 chr1 203319167 203319308 -78874356 - MER5A DNA MER1_type 0 189 26 1203 228 23 0 chr1 203319457 203319676 -78873988 + MER58A DNA MER1_type 1 224 0 2355 97 7 0 chr1 203320279 203320589 -78873075 - AluSp SINE Alu 0 313 2 213 39 0 0 chr1 203320652 203320678 -78872986 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1776 173 0 11 chr1 203320681 203320965 -78872699 - AluJb SINE Alu -31 281 1 583 244 204 20 chr1 203321585 203321786 -78871878 + MIR SINE MIR 23 260 -2 2329 106 0 0 chr1 203322102 203322405 -78871259 - AluSx SINE Alu -7 305 3 281 214 0 57 chr1 203322415 203322485 -78871179 - MIR SINE MIR -70 192 127 457 219 0 38 chr1 203322495 203322600 -78871064 - MIR SINE MIR -70 192 92 390 274 126 39 chr1 203322834 203323089 -78870575 - L2 LINE L2 -38 3275 2999 1703 60 28 0 chr1 203323089 203323306 -78870358 - THE1A LTR MaLR -132 223 1 945 154 6 13 chr1 203324191 203324347 -78869317 + AluSg/x SINE Alu 135 289 -21 465 169 228 29 chr1 203324570 203324706 -78868958 + MER103 DNA DNA 3 165 -1 2328 87 7 3 chr1 203324956 203325256 -78868408 - AluSg SINE Alu -9 301 1 2230 108 3 0 chr1 203325466 203325773 -78867891 - AluSx SINE Alu -4 308 1 2320 169 55 5 chr1 203326078 203326475 -78867189 + MER47B DNA MER2_type 1 417 -1 25 31 0 0 chr1 203328026 203328058 -78865606 + AT_rich Low_complexity Low_complexity 1 32 0 1845 115 42 0 chr1 203330928 203331189 -78862475 + AluSx SINE Alu 33 304 -8 1131 157 8 63 chr1 203331264 203331625 -78862039 - MLT2D LTR ERVL 0 414 1 464 210 169 0 chr1 203331656 203331780 -78861884 - HAL1 LINE L1 -292 2215 2071 1487 140 17 0 chr1 203331786 203332022 -78861642 - AluSg/x SINE Alu 0 310 71 3235 237 150 36 chr1 203332133 203332518 -78861146 - HAL1 LINE L1 -612 1895 1555 2111 121 14 7 chr1 203332518 203332815 -78860849 - AluSg SINE Alu -11 299 1 3235 237 150 36 chr1 203332815 203333834 -78859830 - HAL1 LINE L1 -952 1555 331 3031 141 73 53 chr1 203334461 203335050 -78858614 - MER7C DNA MER2_type -1 601 1 309 247 0 65 chr1 203335195 203335272 -78858392 + L2 LINE L2 3218 3289 -24 1791 148 20 30 chr1 203335280 203335577 -78858087 - AluJb SINE Alu -18 294 1 1219 326 106 13 chr1 203335847 203336368 -78857296 - MER115 DNA AcHobo -123 570 2 316 267 0 12 chr1 203336369 203336455 -78857209 - L2 LINE L2 -277 3036 2952 259 155 28 70 chr1 203337474 203337545 -78856119 - MIR SINE MIR -43 219 152 952 303 105 16 chr1 203337984 203338433 -78855231 - LTR33 LTR ERVL 0 521 33 363 265 20 31 chr1 203338641 203338739 -78854925 - MIR3 SINE MIR -47 161 65 316 39 0 39 chr1 203338880 203338932 -78854732 + (CA)n Simple_repeat Simple_repeat 1 50 0 253 138 17 69 chr1 203339579 203339637 -78854027 + MIR SINE MIR 91 145 -63 2188 132 0 19 chr1 203339801 203340119 -78853545 - AluSx SINE Alu 0 312 1 198 274 16 65 chr1 203341115 203341177 -78852487 + MIR SINE MIR 38 96 -112 2281 110 0 0 chr1 203341478 203341779 -78851885 - AluSx SINE Alu -11 301 1 936 204 48 0 chr1 203341997 203342203 -78851461 + MIR SINE MIR 24 239 -23 455 248 9 46 chr1 203343033 203343142 -78850522 + MIR3 SINE MIR 12 116 -92 344 287 51 32 chr1 203343679 203343836 -78849828 + MIR SINE MIR 103 262 0 235 227 72 31 chr1 203343932 203344029 -78849635 - MIR SINE MIR -62 146 46 2213 93 10 13 chr1 203344066 203344377 -78849287 + AluSg SINE Alu 1 310 0 31 44 0 0 chr1 203344679 203344724 -78848940 + AT_rich Low_complexity Low_complexity 1 45 0 353 51 85 0 chr1 203345055 203345114 -78848550 - L1MB4 LINE L1 0 6180 6117 482 256 141 28 chr1 203345151 203345525 -78848139 - L1ME4a LINE L1 -218 5903 5481 535 311 74 29 chr1 203345595 203345945 -78847719 - L1ME4a LINE L1 -248 5873 5508 21 36 0 0 chr1 203346843 203346871 -78846793 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 203347002 203347027 -78846637 + GC_rich Low_complexity Low_complexity 1 25 0 2760 140 70 45 chr1 203347293 203347822 -78845842 - MER21A LTR ERV1 -14 917 376 748 113 258 65 chr1 203347827 203347959 -78845705 - MER21A LTR ERV1 -667 264 159 2439 86 0 0 chr1 203347959 203348260 -78845404 - AluSx SINE Alu -11 301 1 748 113 258 65 chr1 203348260 203348313 -78845351 - MER21A LTR ERV1 -772 159 43 22 80 0 0 chr1 203348410 203348460 -78845204 + AT_rich Low_complexity Low_complexity 1 50 0 572 235 94 42 chr1 203348561 203348683 -78844981 - L1MEd LINE L1 -4722 1588 1474 3333 155 27 62 chr1 203348683 203349317 -78844347 - LTR9 LTR ERV1 0 612 1 572 235 94 42 chr1 203349317 203349633 -78844031 - L1MEd LINE L1 -4836 1474 1075 32 57 0 0 chr1 203349717 203349770 -78843894 + AT_rich Low_complexity Low_complexity 1 53 0 252 212 22 0 chr1 203349770 203349907 -78843757 + (TA)n Simple_repeat Simple_repeat 2 141 0 463 264 104 31 chr1 203350352 203350545 -78843119 + MIR SINE MIR 3 209 -53 26 30 0 0 chr1 203350562 203350595 -78843069 + AT_rich Low_complexity Low_complexity 1 33 0 1583 227 229 3 chr1 203350723 203351330 -78842334 + L2 LINE L2 1618 2361 -953 1026 142 170 5 chr1 203351330 203351548 -78842116 - L1 LINE L1 -2107 4039 3786 248 316 209 4 chr1 203352125 203352369 -78841295 - L3 LINE CR1 -200 1377 1084 939 203 0 0 chr1 203352392 203352555 -78841109 - FRAM SINE Alu -13 163 1 589 277 132 0 chr1 203352706 203352941 -78840723 - L3 LINE CR1 -708 869 604 220 253 163 6 chr1 203352965 203353131 -78840533 - L2 LINE L2 -14 3299 3108 374 294 153 12 chr1 203353163 203353215 -78840449 - L3 LINE CR1 -978 599 556 2223 75 18 4 chr1 203353215 203353496 -78840168 + AluSx SINE Alu 1 285 -27 374 294 153 12 chr1 203353496 203353613 -78840051 - L3 LINE CR1 -1021 556 406 2240 193 24 98 chr1 203353729 203354032 -78839632 - L1ME LINE L1 -698 5400 5076 2513 90 0 0 chr1 203354032 203354342 -78839322 - AluSx SINE Alu -2 310 1 2240 193 24 98 chr1 203354342 203354492 -78839172 - L1ME LINE L1 -1022 5076 4917 1846 161 13 3 chr1 203354492 203354797 -78838867 - AluJo SINE Alu -4 308 1 2240 193 24 98 chr1 203354797 203355145 -78838519 - L1ME LINE L1 -1181 4917 4657 * 2418 144 174 2 chr1 203355132 203355598 -78838066 - L1MB7 LINE L1 -16 6168 5623 2217 106 0 0 chr1 203355603 203355919 -78837745 - AluSq SINE Alu 0 316 1 614 190 19 44 chr1 203355945 203356103 -78837561 - L1ME LINE L1 -1428 4652 4499 25 31 0 0 chr1 203356111 203356143 -78837521 + AT_rich Low_complexity Low_complexity 1 32 0 342 299 148 26 chr1 203356729 203356993 -78836671 - MLT1K LTR MaLR -164 424 129 2009 133 7 10 chr1 203357933 203358235 -78835429 + AluJo SINE Alu 1 301 -11 224 314 43 14 chr1 203358377 203358447 -78835217 - L2 LINE L2 -21 3251 3180 504 179 54 9 chr1 203358603 203358715 -78834949 + MER69 DNA AcHobo 2365 2481 -45 210 292 0 0 chr1 203358802 203358850 -78834814 - L2 LINE L2 -86 3186 3139 2333 107 0 0 chr1 203359017 203359308 -78834356 - AluSx SINE Alu -21 291 1 197 273 203 0 chr1 203359463 203359606 -78834058 + L2 LINE L2 2713 2884 -430 1376 191 86 94 chr1 203360209 203360624 -78833040 - MLT1C LTR MaLR -5 462 50 2052 137 0 17 chr1 203360624 203360924 -78832740 - AluJb SINE Alu -13 299 5 1376 191 86 94 chr1 203360924 203360974 -78832690 - MLT1C LTR MaLR -417 50 1 1202 205 58 26 chr1 203361007 203361319 -78832345 - MER2 DNA MER2_type -23 322 1 1518 223 50 74 chr1 203361519 203361679 -78831985 - L1ME LINE L1 -3215 2865 2703 1555 191 3 30 chr1 203361679 203361978 -78831686 - AluJo SINE Alu -21 291 1 1518 223 50 74 chr1 203361978 203362256 -78831408 - L1ME LINE L1 -3377 2703 2444 2424 78 0 31 chr1 203362256 203362577 -78831087 - AluY SINE Alu 0 311 1 1518 223 50 74 chr1 203362577 203362756 -78830908 - L1ME LINE L1 -3636 2444 2262 277 145 0 72 chr1 203362868 203362951 -78830713 + (TA)n Simple_repeat Simple_repeat 1 77 0 227 256 35 0 chr1 203362956 203363042 -78830622 - L1MC4 LINE L1 -1339 6703 6615 315 131 0 0 chr1 203363049 203363142 -78830522 + (TA)n Simple_repeat Simple_repeat 1 93 0 986 238 53 45 chr1 203363144 203363508 -78830156 - L1ME LINE L1 -3814 2281 1941 1067 162 9 57 chr1 203363508 203363737 -78829927 + MER20 DNA MER1_type 1 218 -1 986 238 53 45 chr1 203363737 203363880 -78829784 - L1ME LINE L1 -4154 1941 1801 764 160 97 6 chr1 203363912 203364087 -78829577 + MER58A DNA MER1_type 34 224 0 2780 262 73 56 chr1 203364087 203365741 -78827923 - L1ME LINE L1 -4452 1809 77 387 0 0 0 chr1 203365741 203365784 -78827880 + (TG)n Simple_repeat Simple_repeat 2 44 0 2780 262 73 56 chr1 203365784 203365859 -78827805 - L1ME LINE L1 -6184 77 5 1152 179 14 5 chr1 203366065 203366272 -78827392 + MER63A DNA MER1_type 1 209 -1 198 0 0 0 chr1 203366545 203366567 -78827097 + (CG)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr1 203369158 203369186 -78824478 + (TA)n Simple_repeat Simple_repeat 1 28 0 895 136 0 0 chr1 203375179 203375297 -78818367 - FLAM_C SINE Alu -25 118 1 452 300 72 33 chr1 203376462 203376642 -78817022 - MIR SINE MIR -39 223 37 1536 143 4 0 chr1 203376769 203377000 -78816664 - AluJo SINE Alu 0 312 81 198 191 0 0 chr1 203377211 203377258 -78816406 + (TG)n Simple_repeat Simple_repeat 2 48 0 234 253 0 36 chr1 203377264 203377347 -78816317 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 187 272 19 0 chr1 203377384 203377487 -78816177 + (TATATG)n Simple_repeat Simple_repeat 2 106 0 1895 149 45 0 chr1 203377958 203378247 -78815417 - AluSx SINE Alu -5 307 6 251 83 0 21 chr1 203428968 203429016 -78764648 + (CAAAA)n Simple_repeat Simple_repeat 1 47 0 2175 112 0 13 chr1 203429313 203429617 -78764047 + AluSx SINE Alu 1 300 -12 186 284 40 40 chr1 203429624 203429698 -78763966 + L3 LINE CR1 84 157 -1420 822 174 14 7 chr1 203430244 203430388 -78763276 + AluSg/x SINE Alu 150 294 -16 2132 192 33 95 chr1 203430396 203430815 -78762849 - L1ME LINE L1 -582 5582 5139 2537 90 0 0 chr1 203430815 203431125 -78762539 - AluSx SINE Alu -2 310 1 2132 192 33 95 chr1 203431125 203431275 -78762389 - L1ME LINE L1 -1025 5139 4981 1908 157 13 3 chr1 203431275 203431580 -78762084 - AluJo SINE Alu -4 308 1 2132 192 33 95 chr1 203431580 203431928 -78761736 - L1ME LINE L1 -1183 4981 4723 * 2253 144 174 2 chr1 203431915 203432381 -78761283 - L1MB7 LINE L1 -16 6168 5623 2232 106 0 0 chr1 203432386 203432702 -78760962 - AluSq SINE Alu 0 316 1 568 196 19 44 chr1 203432728 203432886 -78760778 - L1ME LINE L1 -1428 4718 4565 25 31 0 0 chr1 203432894 203432926 -78760738 + AT_rich Low_complexity Low_complexity 1 32 0 281 301 136 0 chr1 203433672 203433775 -78759889 - MLT1K LTR MaLR -343 245 129 198 0 0 0 chr1 203439389 203439411 -78754253 + (CG)n Simple_repeat Simple_repeat 1 22 0 23 33 0 0 chr1 203439795 203439825 -78753839 + GC_rich Low_complexity Low_complexity 1 30 0 202 98 49 24 chr1 203440717 203440758 -78752906 + C-rich Low_complexity Low_complexity 5 46 0 305 327 10 20 chr1 203441069 203441119 -78752545 + MIR SINE MIR 55 104 -158 2234 114 3 7 chr1 203441119 203441417 -78752247 - AluSx SINE Alu -15 297 1 305 327 10 20 chr1 203441417 203441467 -78752197 + MIR SINE MIR 104 154 -108 2211 118 64 14 chr1 203441555 203441912 -78751752 + THE1C LTR MaLR 1 375 0 290 257 59 26 chr1 203441988 203442140 -78751524 + L1ME LINE L1 4490 4646 -1500 1479 160 0 8 chr1 203442140 203442384 -78751280 - AluJo SINE Alu -16 296 55 2093 132 0 13 chr1 203443023 203443326 -78750338 - AluJo SINE Alu -13 299 1 294 235 184 108 chr1 203444049 203444381 -78749283 + L2 LINE L2 2911 3267 -5 372 286 96 34 chr1 203444602 203444825 -78748839 + L1ME LINE L1 5576 5784 -337 1789 166 10 22 chr1 203444825 203445138 -78748526 + AluJo SINE Alu 1 309 -3 2312 100 0 10 chr1 203445140 203445450 -78748214 + AluSg1 SINE Alu 1 307 -2 372 286 96 34 chr1 203445450 203445523 -78748141 + L1ME LINE L1 5784 5903 -218 440 239 77 0 chr1 203446207 203446324 -78747340 - MLT1H LTR MaLR -4 545 420 2035 133 7 10 chr1 203446467 203446769 -78746895 + AluJo SINE Alu 1 301 -11 247 314 43 14 chr1 203446911 203446981 -78746683 - L2 LINE L2 -21 3251 3180 477 179 54 9 chr1 203447137 203447249 -78746415 + MER69 DNA AcHobo 2365 2481 -45 273 298 163 0 chr1 203447324 203447502 -78746162 - L2 LINE L2 -72 3241 3035 2351 107 0 0 chr1 203447551 203447842 -78745822 - AluSx SINE Alu -21 291 1 252 255 163 26 chr1 203447997 203448150 -78745514 + L2 LINE L2 2713 2886 -428 1280 193 86 94 chr1 203448743 203449158 -78744506 - MLT1C LTR MaLR -5 462 50 2076 137 0 17 chr1 203449158 203449458 -78744206 - AluJb SINE Alu -13 299 5 1280 193 86 94 chr1 203449458 203449508 -78744156 - MLT1C LTR MaLR -417 50 1 1117 205 58 26 chr1 203449541 203449853 -78743811 - MER2 DNA MER2_type -23 322 1 208 296 92 31 chr1 203449856 203449954 -78743710 + L2 LINE L2 3002 3105 -208 1500 239 52 42 chr1 203450053 203450192 -78743472 - L1ME LINE L1 -3215 2865 2729 1598 200 3 28 chr1 203450192 203450512 -78743152 - AluJo SINE Alu 0 312 1 1500 239 52 42 chr1 203450512 203450790 -78742874 - L1ME LINE L1 -3351 2729 2438 2445 78 0 31 chr1 203450790 203451111 -78742553 - AluY SINE Alu 0 311 1 1500 239 52 42 chr1 203451111 203451290 -78742374 - L1ME LINE L1 -3642 2438 2262 322 309 9 64 chr1 203451367 203451477 -78742187 + L1MC4 LINE L1 6616 6719 -1323 * 341 300 44 0 chr1 203451395 203451485 -78742179 - L1MC4 LINE L1 -1334 6708 6615 390 256 35 0 chr1 203451490 203451576 -78742088 - L1MC4 LINE L1 -1339 6703 6615 321 309 21 31 chr1 203451547 203451644 -78742020 + L1MC4 LINE L1 6614 6709 -1333 * 210 71 0 0 chr1 203451648 203451676 -78741988 + (TA)n Simple_repeat Simple_repeat 1 28 0 896 254 45 32 chr1 203451678 203452042 -78741622 - L1ME LINE L1 -3814 2294 1941 1109 162 9 57 chr1 203452042 203452271 -78741393 + MER20 DNA MER1_type 1 218 -1 896 254 45 32 chr1 203452271 203452414 -78741250 - L1ME LINE L1 -4167 1941 1801 717 166 97 6 chr1 203452446 203452621 -78741043 + MER58A DNA MER1_type 34 224 0 2688 270 61 46 chr1 203452621 203454275 -78739389 - L1ME LINE L1 -4452 1809 77 387 0 0 0 chr1 203454275 203454318 -78739346 + (TG)n Simple_repeat Simple_repeat 2 44 0 2688 270 61 46 chr1 203454318 203454393 -78739271 - L1ME LINE L1 -6184 77 5 1244 169 14 5 chr1 203454599 203454806 -78738858 + MER63A DNA MER1_type 1 209 -1 1714 158 14 7 chr1 203455027 203455319 -78738345 - AluJo SINE Alu -18 294 1 932 280 44 88 chr1 203455320 203455773 -78737891 + LTR47B LTR ERVL 11 443 0 21 0 0 0 chr1 203455880 203455901 -78737763 + AT_rich Low_complexity Low_complexity 1 21 0 2248 83 3 0 chr1 203456256 203456544 -78737120 - AluSg SINE Alu -16 294 6 1288 156 18 22 chr1 203456933 203457158 -78736506 - AluJo SINE Alu -88 224 1 1117 279 117 27 chr1 203457916 203458593 -78735071 + L2 LINE L2 1296 2033 -1281 2060 268 71 12 chr1 203458606 203459181 -78734483 - MLT1E2 LTR MaLR -15 611 3 452 321 43 5 chr1 203459186 203459370 -78734294 + L2 LINE L2 2035 2225 -1089 1435 151 104 7 chr1 203459370 203459648 -78734016 + AluJb SINE Alu 6 310 -2 549 315 63 16 chr1 203459648 203459902 -78733762 + L2 LINE L2 2207 2472 -842 2224 93 3 3 chr1 203459903 203460205 -78733459 - AluSx SINE Alu -10 302 1 256 278 15 107 chr1 203460357 203460620 -78733044 + L2 LINE L2 3031 3269 -44 346 326 94 22 chr1 203460833 203461014 -78732650 - MIR SINE MIR -2 260 67 1600 267 124 22 chr1 203461014 203461643 -78732021 + MER115 DNA AcHobo 1 693 0 284 263 42 0 chr1 203461924 203462006 -78731658 + MIR SINE MIR 49 137 -71 2477 62 0 3 chr1 203462475 203462782 -78730882 - AluY SINE Alu -5 306 1 623 267 78 18 chr1 203463199 203463416 -78730248 + MIR SINE MIR 32 261 -1 560 266 86 7 chr1 203463795 203463975 -78729689 + MIR SINE MIR 20 211 -51 2343 85 0 3 chr1 203464020 203464327 -78729337 - AluSx SINE Alu -6 306 1 1171 259 220 17 chr1 203465141 203465690 -78727974 + L2 LINE L2 2392 2828 -485 2383 75 0 0 chr1 203465690 203465996 -78727668 + AluY SINE Alu 1 306 -5 1171 259 220 17 chr1 203465996 203466218 -78727446 + L2 LINE L2 2828 3313 0 231 243 86 0 chr1 203466779 203466849 -78726815 + MLT1L LTR MaLR 214 289 -326 26 82 0 0 chr1 203466898 203466959 -78726705 + AT_rich Low_complexity Low_complexity 1 61 0 282 277 62 39 chr1 203466967 203467097 -78726567 + MLT1L LTR MaLR 258 390 -225 468 268 104 21 chr1 203467788 203468034 -78725630 - MLT1H LTR MaLR -291 299 19 2174 91 0 14 chr1 203468130 203468426 -78725238 - AluSc SINE Alu -17 292 1 2657 26 0 0 chr1 203468438 203468747 -78724917 - AluY SINE Alu -2 309 1 289 77 0 0 chr1 203468815 203468854 -78724810 - Alu SINE Alu -263 39 1 541 137 0 0 chr1 203468872 203468945 -78724719 - tRNA-Val-GTT tRNA tRNA -3 73 1 1649 166 48 3 chr1 203468978 203469268 -78724396 + AluJb SINE Alu 1 303 -9 457 316 16 32 chr1 203469551 203469738 -78723926 + L3 LINE CR1 1392 1575 -2 274 346 37 9 chr1 203470283 203470390 -78723274 - L2 LINE L2 -1 3312 3203 203 219 0 0 chr1 203470517 203470558 -78723106 - MIR SINE MIR -153 109 69 2065 133 19 3 chr1 203471385 203471702 -78721962 - L1PA13 LINE L1 -3 6160 5839 1879 114 57 7 chr1 203472105 203472402 -78721262 - AluSx SINE Alu 0 312 1 723 208 19 6 chr1 203474565 203474724 -78718940 + L1PA16 LINE L1 5982 6142 -24 1251 176 62 62 chr1 203474763 203474807 -78718857 - MER33 DNA MER1_type -2261 324 281 2199 53 7 18 chr1 203474807 203475114 -78718550 - AluY SINE Alu 0 304 1 1251 176 62 62 chr1 203475114 203475391 -78718273 - MER33 DNA MER1_type -2303 282 1 330 250 68 0 chr1 203475414 203475502 -78718162 + MER5A DNA MER1_type 16 109 -80 211 308 63 44 chr1 203475594 203475753 -78717911 - MIR SINE MIR -44 218 57 327 295 195 30 chr1 203475991 203476191 -78717473 - MIR SINE MIR -1 261 29 327 287 73 47 chr1 203476532 203476682 -78716982 + MIR SINE MIR 107 260 -2 2201 110 0 0 chr1 203477685 203477986 -78715678 - AluSx SINE Alu -11 301 1 919 221 50 0 chr1 203478204 203478426 -78715238 + MIR SINE MIR 24 256 -6 417 261 104 34 chr1 203479240 203479459 -78714205 + MIR3 SINE MIR 12 261 -1 351 306 45 25 chr1 203479886 203480043 -78713621 + MIR SINE MIR 103 262 0 236 227 72 31 chr1 203480139 203480236 -78713428 - MIR SINE MIR -62 146 46 2153 93 10 13 chr1 203480273 203480584 -78713080 + AluSg SINE Alu 1 310 0 31 44 0 0 chr1 203480886 203480931 -78712733 + AT_rich Low_complexity Low_complexity 1 45 0 325 268 168 23 chr1 203481167 203481262 -78712402 - L1ME4a LINE L1 -56 6065 5985 340 82 82 0 chr1 203481262 203481323 -78712341 - L1MB4 LINE L1 0 6180 6115 325 268 168 23 chr1 203481323 203481619 -78712045 - L1ME4a LINE L1 -136 5985 5617 538 346 73 22 chr1 203481802 203482293 -78711371 - L1ME4a LINE L1 -248 5873 5358 21 36 0 0 chr1 203483050 203483078 -78710586 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1 203483209 203483234 -78710430 + GC_rich Low_complexity Low_complexity 1 25 0 211 143 16 63 chr1 203483454 203483517 -78710147 + (CCCCG)n Simple_repeat Simple_repeat 5 64 0 265 314 137 0 chr1 203487269 203487371 -78706293 - L2 LINE L2 -2 3270 3155 * 281 329 12 0 chr1 203487365 203487450 -78706214 - L3 LINE CR1 -81 1496 1411 220 235 0 0 chr1 203487873 203487924 -78705740 - MIR SINE MIR -30 232 182 418 268 10 0 chr1 203488119 203488216 -78705448 - MIR SINE MIR -67 141 44 572 263 26 27 chr1 203488614 203488841 -78704823 - MIR SINE MIR -21 241 15 197 354 69 0 chr1 203489598 203489728 -78703936 - MIR SINE MIR -73 189 51 410 320 77 13 chr1 203490815 203491049 -78702615 - MIR SINE MIR -2 260 12 228 67 0 0 chr1 203491736 203491766 -78701898 + (CA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr1 203492310 203492334 -78701330 + GC_rich Low_complexity Low_complexity 1 24 0 507 328 83 10 chr1 203492692 203492896 -78700768 - MIR SINE MIR -42 220 2 352 274 113 0 chr1 203493021 203493127 -78700537 - MIR3 SINE MIR -6 202 85 185 220 120 40 chr1 203494290 203494390 -78699274 - L2 LINE L2 -335 2978 2871 * 851 280 228 25 chr1 203494372 203494672 -78698992 - L2 LINE L2 -12 3301 3063 1849 188 51 3 chr1 203494672 203495044 -78698620 - MLT1B LTR MaLR 0 390 1 851 280 228 25 chr1 203495044 203495990 -78697674 - L2 LINE L2 -250 3063 1796 183 322 23 0 chr1 203496049 203496136 -78697528 - L2 LINE L2 -1655 1659 1571 221 258 163 53 chr1 203496468 203496677 -78696987 - L2 LINE L2 -2926 388 157 286 325 41 0 chr1 203502308 203502431 -78691233 - L2 LINE L2 -211 3061 2934 201 351 126 0 chr1 203502461 203502572 -78691092 - L2 LINE L2 -9 3304 3180 486 218 127 7 chr1 203502976 203503118 -78690546 + MIR SINE MIR 20 178 -84 2303 99 23 3 chr1 203505668 203505971 -78687693 + AluSg SINE Alu 1 309 -1 422 236 146 0 chr1 203506241 203506364 -78687300 + MER96 DNA MER1_type? 1 141 -34 459 176 66 0 chr1 203506471 203506562 -78687102 + LTR54 LTR ERV1 3 99 -411 336 288 125 18 chr1 203506571 203506791 -78686873 + MER57A LTR ERV1 111 382 -52 308 167 77 0 chr1 203506761 203506839 -78686825 + LTR54 LTR ERV1 427 510 0 * 207 0 0 0 chr1 203506943 203506966 -78686698 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1021 229 102 58 chr1 203506998 203507506 -78686158 - MLT1G1 LTR MaLR 0 595 4 565 231 77 67 chr1 203507518 203507817 -78685847 + L1ME4a LINE L1 5522 5823 -298 545 242 96 13 chr1 203507823 203507980 -78685684 + FRAM SINE Alu 1 170 -6 253 212 95 79 chr1 203508028 203508079 -78685585 + L1ME4a LINE L1 5870 5919 -202 2353 68 4 0 chr1 203508079 203508390 -78685274 - AluY SINE Alu 0 312 1 253 212 95 79 chr1 203508390 203508578 -78685086 + L1ME4a LINE L1 5919 6114 -7 315 288 80 40 chr1 203508585 203508710 -78684954 + L1ME LINE L1 5321 5450 -712 364 307 31 0 chr1 203508767 203508894 -78684770 + L1ME LINE L1 5554 5684 -437 1702 170 0 7 chr1 203509111 203509393 -78684271 - AluJo SINE Alu -5 307 28 234 320 39 0 chr1 203509393 203509496 -78684168 + Charlie8 DNA MER1_type 408 514 -1903 345 305 61 79 chr1 203509553 203509832 -78683832 + L2 LINE L2 2999 3272 0 210 304 226 20 chr1 203509967 203510101 -78683563 + MIR SINE MIR 7 112 -150 1802 132 22 22 chr1 203510101 203510373 -78683291 + AluJb SINE Alu 9 280 -32 225 0 0 0 chr1 203510373 203510398 -78683266 + (GA)n Simple_repeat Simple_repeat 1 25 0 210 304 226 20 chr1 203510398 203510466 -78683198 + MIR SINE MIR 111 252 -10 190 316 81 23 chr1 203511076 203511250 -78682414 + L2 LINE L2 2228 2411 -903 316 39 0 39 chr1 203511775 203511827 -78681837 + (TG)n Simple_repeat Simple_repeat 1 50 0 354 265 20 31 chr1 203511968 203512066 -78681598 + MIR3 SINE MIR 65 161 -47 953 303 105 16 chr1 203512274 203512723 -78680941 + LTR33 LTR ERVL 33 521 0 254 155 28 70 chr1 203513162 203513233 -78680431 + MIR SINE MIR 152 219 -43 300 267 0 12 chr1 203514252 203514338 -78679326 + L2 LINE L2 2952 3036 -277 1711 306 108 11 chr1 203514339 203514970 -78678694 + MER115 DNA AcHobo 2 693 0 553 267 131 4 chr1 203514970 203515206 -78678458 + L2 LINE L2 3048 3313 0 22 70 0 0 chr1 203516036 203516079 -78677585 + GC_rich Low_complexity Low_complexity 1 43 0 184 26 0 103 chr1 203516094 203516133 -78677531 + (CGGGGG)n Simple_repeat Simple_repeat 1 35 0 192 179 0 0 chr1 203516257 203516296 -78677368 + (CTG)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr1 203516503 203516540 -78677124 + GC_rich Low_complexity Low_complexity 1 37 0 229 292 45 22 chr1 203517436 203517525 -78676139 - MIR SINE MIR 0 262 172 332 276 138 0 chr1 203520185 203520337 -78673327 - MIR3 SINE MIR -19 189 17 1339 142 72 20 chr1 203520762 203521187 -78672477 - LTR54 LTR ERV1 0 510 1 2131 210 59 16 chr1 203521188 203521734 -78671930 - MER31-int LTR ERV1 -394 7143 4175 5226 195 80 68 chr1 203521782 203522409 -78671255 - MER31-int LTR ERV1 -515 5816 5198 512 123 0 0 chr1 203522409 203522482 -78671182 + AluSg/x SINE Alu 205 277 -32 275 0 29 0 chr1 203522482 203522517 -78671147 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 5226 195 80 68 chr1 203522517 203523779 -78669885 - MER31-int LTR ERV1 -1133 5198 3953 1813 169 6 19 chr1 203523779 203524093 -78669571 + AluJo SINE Alu 3 312 0 5226 195 80 68 chr1 203524093 203524846 -78668818 - MER31-int LTR ERV1 -2378 3953 1554 488 181 94 35 chr1 203524844 203525015 -78668649 - MER31-int LTR ERV1 -3013 1923 1743 * 191 318 126 7 chr1 203525016 203525167 -78668497 - L2 LINE L2 -465 2849 2681 1776 160 108 43 chr1 203526072 203526471 -78667193 - MSTB LTR MaLR -1 425 1 504 259 78 29 chr1 203529834 203530077 -78663587 + MER112 DNA MER1_type 1 255 -1 349 255 54 69 chr1 203530729 203530889 -78662775 + MIR SINE MIR 35 192 -58 198 318 57 47 chr1 203532278 203532470 -78661194 - L2 LINE L2 -460 2854 2661 2298 108 3 0 chr1 203533847 203534142 -78659522 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 203534429 203534450 -78659214 + AT_rich Low_complexity Low_complexity 1 21 0 901 156 7 0 chr1 203534450 203534585 -78659079 - AluJo SINE Alu -176 136 1 553 291 76 24 chr1 203535131 203535341 -78658323 - MIR SINE MIR -30 232 12 196 269 77 0 chr1 203535982 203536034 -78657630 - L2 LINE L2 0 3313 3258 215 209 115 135 chr1 203536176 203536213 -78657451 - MIR SINE MIR -116 146 110 2157 102 3 24 chr1 203536213 203536508 -78657156 + AluSg SINE Alu 20 308 -2 215 209 115 135 chr1 203536508 203536618 -78657046 - MIR SINE MIR -152 110 2 2172 115 0 13 chr1 203538574 203538878 -78654786 - AluSx SINE Alu -12 300 1 2304 88 40 0 chr1 203539298 203539594 -78654070 - AluSq SINE Alu -5 308 1 396 242 0 11 chr1 203540248 203540339 -78653325 - MIR SINE MIR -153 109 20 320 329 66 20 chr1 203540467 203540619 -78653045 + MIR SINE MIR 89 247 -15 389 282 30 23 chr1 203541129 203541260 -78652404 + MIR SINE MIR 13 144 -118 2158 130 3 0 chr1 203541269 203541576 -78652088 - AluSq SINE Alu -5 308 1 2320 104 0 3 chr1 203541582 203541881 -78651783 - AluY SINE Alu -13 298 1 356 242 32 96 chr1 203541902 203542059 -78651605 - MIR SINE MIR -10 252 106 285 241 65 0 chr1 203545283 203545391 -78648273 - MER112 DNA MER1_type -138 122 8 271 195 169 26 chr1 203545776 203545853 -78647811 - MIR SINE MIR 0 262 175 21 36 0 0 chr1 203546588 203546616 -78647048 + AT_rich Low_complexity Low_complexity 1 28 0 219 307 44 26 chr1 203547389 203547503 -78646161 - MIR SINE MIR -53 209 94 605 14 14 0 chr1 203551622 203551696 -78641968 + (TG)n Simple_repeat Simple_repeat 2 76 0 1968 107 52 7 chr1 203551812 203552084 -78641580 + AluJb SINE Alu 3 286 -26 193 265 0 0 chr1 203553205 203553254 -78640410 + L2 LINE L2 3265 3313 0 213 175 0 0 chr1 203553254 203553294 -78640370 + (CGAA)n Simple_repeat Simple_repeat 2 41 0 192 77 0 0 chr1 203553353 203553379 -78640285 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 195 129 0 0 chr1 203553754 203553785 -78639879 + (T)n Simple_repeat Simple_repeat 1 31 0 1314 175 51 16 chr1 203554425 203554682 -78638982 - AluJo SINE Alu -36 276 11 362 169 17 0 chr1 203554893 203554952 -78638712 - AluJ/FLAM SINE Alu -242 60 1 267 321 50 0 chr1 203555081 203555208 -78638456 - MIR SINE MIR -67 141 39 370 256 243 3 chr1 203555983 203556354 -78637310 + L2 LINE L2 628 1087 -2227 515 228 266 13 chr1 203556981 203557214 -78636450 + L2 LINE L2 2244 2535 -779 261 83 0 0 chr1 203557220 203557256 -78636408 + (TTA)n Simple_repeat Simple_repeat 2 37 0 917 163 0 0 chr1 203557258 203557405 -78636259 - FRAM SINE Alu -30 146 1 540 294 143 12 chr1 203557405 203558051 -78635613 + L2 LINE L2 2521 3313 0 358 255 53 0 chr1 203558087 203558181 -78635483 - MIR SINE MIR -116 146 48 521 258 6 67 chr1 203558776 203558954 -78634710 - MIR3 SINE MIR -26 182 16 198 317 69 0 chr1 203559088 203559189 -78634475 - MIR SINE MIR -70 192 85 456 200 0 0 chr1 203560641 203560736 -78632928 + (TG)n Simple_repeat Simple_repeat 2 96 0 182 314 88 10 chr1 203561240 203561342 -78632322 - MIR SINE MIR -70 192 83 183 381 48 0 chr1 203562390 203562495 -78631169 - MIR SINE MIR -99 163 54 236 274 108 20 chr1 203562595 203562697 -78630967 - MIR SINE MIR -74 134 23 481 157 15 0 chr1 203566042 203566176 -78627488 + (CA)n Simple_repeat Simple_repeat 2 137 0 781 206 50 40 chr1 203566800 203566999 -78626665 - MIR SINE MIR -18 244 44 542 328 78 11 chr1 203567879 203568059 -78625605 + MER91A DNA MER1_type 1 192 -4 203 273 15 45 chr1 203569128 203569194 -78624470 + L2 LINE L2 3209 3272 0 2116 100 4 0 chr1 203569306 203569615 -78624049 - AluSx SINE Alu 0 310 1 893 251 72 21 chr1 203570177 203570412 -78623252 + MIR SINE MIR 16 262 0 400 253 173 12 chr1 203571894 203572056 -78621608 - MIR SINE MIR -24 238 51 1816 149 45 0 chr1 203572761 203573050 -78620614 + AluSx SINE Alu 6 307 -5 187 272 19 0 chr1 203573521 203573624 -78620040 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 234 253 0 36 chr1 203573661 203573744 -78619920 + (CATATA)n Simple_repeat Simple_repeat 6 85 0 198 191 0 0 chr1 203573750 203573797 -78619867 + (CA)n Simple_repeat Simple_repeat 2 48 0 1482 143 4 0 chr1 203574008 203574239 -78619425 + AluJo SINE Alu 81 312 0 498 300 72 33 chr1 203574366 203574546 -78619118 + MIR SINE MIR 37 223 -39 874 119 0 0 chr1 203575711 203575829 -78617835 + FLAM_C SINE Alu 1 118 -25 252 0 0 0 chr1 203581822 203581850 -78611814 + (TA)n Simple_repeat Simple_repeat 1 28 0 34385 44 5 0 chr1 203682515 203686948 -78506716 - L1P LINE L1 -1652 4494 43 1452 178 11 94 chr1 203687051 203687552 -78506112 + Charlie1b DNA MER1_type 54 522 -1 465 308 62 54 chr1 203687553 203687672 -78505992 - L2 LINE L2 -514 2800 2677 3608 117 31 4 chr1 203687672 203688185 -78505479 - MER1A DNA MER1_type 0 527 1 465 308 62 54 chr1 203688185 203688289 -78505375 - L2 LINE L2 -637 2677 2575 458 168 42 14 chr1 203688290 203688454 -78505210 - MLT1C LTR MaLR -1 466 259 431 134 49 12 chr1 203688458 203688540 -78505124 - MLT1C LTR MaLR -382 85 1 310 275 47 102 chr1 203688540 203688776 -78504888 - L2 LINE L2 -735 2579 2357 1502 191 22 54 chr1 203690044 203690390 -78503274 - AluJo SINE Alu 0 312 1 27 29 0 0 chr1 203691902 203691936 -78501728 + AT_rich Low_complexity Low_complexity 1 34 0 225 94 0 0 chr1 203692194 203692226 -78501438 + (TG)n Simple_repeat Simple_repeat 1 32 0 227 203 0 51 chr1 203692226 203692305 -78501359 + L1MC4 LINE L1 6615 6689 -1353 20001 140 46 37 chr1 203692913 203696342 -78497322 + L1MA2 LINE L1 20 3416 -4307 2911 3 0 0 chr1 203696342 203696655 -78497009 + AluYb8 SINE Alu 1 313 -5 20001 140 46 37 chr1 203696655 203698834 -78494830 + L1MA2 LINE L1 3416 5574 -2149 529 130 0 0 chr1 203698834 203698911 -78494753 - AluS SINE Alu -11 299 223 20001 140 46 37 chr1 203698911 203699850 -78493814 + L1MA2 LINE L1 5574 6503 -1220 2009 149 3 16 chr1 203699850 203700166 -78493498 - AluSx SINE Alu 0 312 1 20001 140 46 37 chr1 203700166 203701162 -78492502 + L1MA2 LINE L1 6503 7723 0 605 304 174 9 chr1 203701212 203701442 -78492222 - L2 LINE L2 0 3272 3005 577 240 0 13 chr1 203701447 203701601 -78492063 + L1MEd LINE L1 2 153 -5966 643 278 83 44 chr1 203701859 203702244 -78491420 + L1MEd LINE L1 495 894 -5225 1833 117 55 52 chr1 203702318 203702626 -78491038 - AluSx SINE Alu -3 309 1 1852 133 17 0 chr1 203702990 203703291 -78490373 - L1MB3 LINE L1 -2 6181 5876 247 48 0 48 chr1 203703301 203703343 -78490321 - L1MA5 LINE L1 -5 6295 6256 651 295 119 11 chr1 203703530 203703798 -78489866 + L2 LINE L2 3002 3298 -15 213 309 49 12 chr1 203705893 203705974 -78487690 + L2 LINE L2 3230 3313 0 2278 100 0 0 chr1 203705976 203706267 -78487397 + AluSx SINE Alu 1 291 -21 779 165 41 0 chr1 203706692 203706813 -78486851 + FLAM_A SINE Alu 1 126 -7 434 264 64 8 chr1 203706979 203707104 -78486560 + L1MC4a LINE L1 500 631 -5488 837 255 50 44 chr1 203707224 203707542 -78486122 + L1MC4a LINE L1 3608 3927 -2202 766 238 145 18 chr1 203707549 203707776 -78485888 + MIR SINE MIR 7 262 0 998 300 91 28 chr1 203707776 203708553 -78485111 + L1MC4a LINE L1 3926 4751 -1378 1257 265 57 16 chr1 203708559 203708929 -78484735 + L1M4b LINE L1 11 395 -6464 922 162 0 14 chr1 203708945 203709093 -78484571 + FRAM SINE Alu 27 172 -4 2463 212 33 40 chr1 203709095 203709614 -78484050 - LTR40a LTR ERVL -4 515 1 868 274 49 13 chr1 203709624 203709931 -78483733 + L1MC4a LINE L1 5397 5714 -431 200 216 0 0 chr1 203709991 203710028 -78483636 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 1449 177 31 4 chr1 203710139 203710399 -78483265 - AluJo SINE Alu -9 303 37 249 250 0 0 chr1 203710419 203710471 -78483193 - MIR SINE MIR -122 140 89 362 284 0 11 chr1 203711257 203711345 -78482319 + L1MC4a LINE L1 5813 5899 -1892 246 156 67 0 chr1 203711594 203711639 -78482025 - L2 LINE L2 -1 3312 3265 1210 262 140 67 chr1 203711763 203712556 -78481108 + L1M4b LINE L1 1072 1806 -5141 2184 123 0 0 chr1 203712556 203712848 -78480816 - AluSx SINE Alu -20 292 1 1210 262 140 67 chr1 203712848 203712860 -78480804 + L1M4b LINE L1 1806 1816 -5131 6279 85 12 4 chr1 203712860 203713693 -78479971 - L1MA2 LINE L1 0 6304 5465 1210 262 140 67 chr1 203713693 203713809 -78479855 + L1M4b LINE L1 1816 2061 -4886 989 223 50 59 chr1 203713827 203714164 -78479500 + L1ME3A LINE L1 5770 6103 -67 412 111 0 16 chr1 203714167 203714230 -78479434 + Tigger2 DNA MER2_type 1 62 -2656 25167 36 3 1 chr1 203714259 203717917 -78475747 - L1PA4 LINE L1 0 6155 2487 1758 33 0 0 chr1 203717917 203718131 -78475533 + L1PA4 LINE L1 2264 2477 -3669 3891 139 43 27 chr1 203718131 203718327 -78475337 + Tigger2 DNA MER2_type 43 234 -2484 1227 66 0 0 chr1 203718327 203718479 -78475185 - L1PA5 LINE L1 -5 6149 5998 3891 139 43 27 chr1 203718479 203718986 -78474678 + Tigger2 DNA MER2_type 234 757 -1961 1077 186 113 0 chr1 203719041 203719272 -78474392 + Tigger2 DNA MER2_type 2452 2708 -10 278 288 83 12 chr1 203719390 203719555 -78474109 - MIR SINE MIR -61 147 19 21 57 0 0 chr1 203719980 203720015 -78473649 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 203720037 203720059 -78473605 + AT_rich Low_complexity Low_complexity 1 22 0 207 280 80 0 chr1 203720118 203720193 -78473471 - MIR SINE MIR 0 262 182 25 0 0 0 chr1 203720934 203720959 -78472705 + AT_rich Low_complexity Low_complexity 1 25 0 213 182 18 55 chr1 203721480 203721535 -78472129 - L2 LINE L2 -4 3309 3257 2183 102 0 14 chr1 203722476 203722769 -78470895 + AluSq SINE Alu 1 289 -24 317 179 15 30 chr1 203723453 203723520 -78470144 + L1ME1 LINE L1 17 82 -6341 1232 87 0 0 chr1 203723526 203723676 -78469988 - AluY SINE Alu -161 150 1 6376 146 20 21 chr1 203723691 203723790 -78469874 - Tigger1 DNA MER2_type -1354 1064 966 2022 145 0 3 chr1 203723790 203724094 -78469570 + AluSx SINE Alu 1 303 -9 6376 146 20 21 chr1 203724094 203725058 -78468606 - Tigger1 DNA MER2_type -1452 966 2 319 121 17 0 chr1 203725059 203725117 -78468547 + L1ME1 LINE L1 3714 3772 -3169 895 98 0 38 chr1 203725117 203725249 -78468415 + AluSg/x SINE Alu 173 299 -13 1223 206 83 79 chr1 203725249 203725522 -78468142 + L1ME1 LINE L1 3763 4033 -2908 1663 166 17 20 chr1 203725522 203725824 -78467840 + AluJo SINE Alu 1 301 -11 1223 206 83 79 chr1 203725824 203725974 -78467690 + L1ME1 LINE L1 4033 4191 -2750 1814 125 17 40 chr1 203725974 203726270 -78467394 - AluSx SINE Alu -23 289 1 1223 206 83 79 chr1 203726270 203726326 -78467338 + L1ME1 LINE L1 4191 4245 -2696 2258 108 0 0 chr1 203726326 203726623 -78467041 + AluSx SINE Alu 1 297 -15 844 205 43 0 chr1 203726628 203726789 -78466875 + FAM SINE Alu 1 45 -4 6401 206 76 48 chr1 203726789 203726914 -78466750 + L1ME1 LINE L1 4241 4361 -2600 2224 115 3 29 chr1 203726914 203727226 -78466438 + AluSx SINE Alu 1 304 -8 6401 206 76 48 chr1 203727226 203729577 -78464087 + L1ME1 LINE L1 4361 6772 -189 1534 164 55 11 chr1 203730044 203730319 -78463345 + AluJo SINE Alu 1 287 -25 1488 268 101 11 chr1 203730651 203731204 -78462460 - L1ME3A LINE L1 -219 5951 5349 216 0 0 0 chr1 203732918 203732942 -78460722 + (A)n Simple_repeat Simple_repeat 1 24 0 1869 144 20 29 chr1 203733090 203733396 -78460268 - AluJo SINE Alu -9 303 1 1869 144 20 29 chr1 203733978 203734284 -78459380 - AluJo SINE Alu -9 303 1 377 127 0 0 chr1 203736042 203736097 -78457567 - Alu SINE Alu -5 297 243 * 586 204 58 0 chr1 203736096 203736233 -78457431 + MER104 DNA Tc2 33 177 -3 1576 165 55 14 chr1 203736248 203736539 -78457125 - AluJo SINE Alu -9 303 1 2196 99 0 20 chr1 203736739 203737043 -78456621 + AluSx SINE Alu 1 298 -14 1142 160 56 9 chr1 203737443 203737656 -78456008 - MER46A DNA MER2_type -13 223 1 189 0 0 0 chr1 203738415 203738436 -78455228 + (A)n Simple_repeat Simple_repeat 1 21 0 1200 171 40 5 chr1 203741247 203741446 -78452218 + MER3 DNA MER1_type 2 207 -2 2168 110 0 3 chr1 203741811 203742103 -78451561 + AluSx SINE Alu 1 291 -21 201 74 0 0 chr1 203742560 203742587 -78451077 + (T)n Simple_repeat Simple_repeat 1 27 0 340 241 65 0 chr1 203750655 203750763 -78442901 - MER112 DNA MER1_type -138 122 8 271 209 198 23 chr1 203751148 203751234 -78442430 - MIR SINE MIR 0 262 162 21 36 0 0 chr1 203751960 203751988 -78441676 + AT_rich Low_complexity Low_complexity 1 28 0 198 307 44 26 chr1 203752761 203752875 -78440789 - MIR SINE MIR -53 209 94 371 21 21 0 chr1 203756994 203757042 -78436622 + (TG)n Simple_repeat Simple_repeat 2 50 0 1841 107 52 7 chr1 203757158 203757430 -78436234 + AluJb SINE Alu 3 286 -26 193 265 0 0 chr1 203758551 203758600 -78435064 + L2 LINE L2 3265 3313 0 213 175 0 0 chr1 203758600 203758640 -78435024 + (CGAA)n Simple_repeat Simple_repeat 2 41 0 192 77 0 0 chr1 203758699 203758725 -78434939 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 195 129 0 0 chr1 203759100 203759131 -78434533 + (T)n Simple_repeat Simple_repeat 1 31 0 1314 175 51 16 chr1 203759771 203760028 -78433636 - AluJo SINE Alu -36 276 11 369 153 17 0 chr1 203760239 203760298 -78433366 - AluJ/FLAM SINE Alu -242 60 1 248 330 50 0 chr1 203760427 203760554 -78433110 - MIR SINE MIR -67 141 39 416 248 243 3 chr1 203761329 203761700 -78431964 + L2 LINE L2 628 1087 -2227 515 228 266 13 chr1 203762327 203762560 -78431104 + L2 LINE L2 2244 2535 -779 261 83 0 0 chr1 203762566 203762602 -78431062 + (TTA)n Simple_repeat Simple_repeat 2 37 0 917 163 0 0 chr1 203762604 203762751 -78430913 - FRAM SINE Alu -30 146 1 515 298 143 12 chr1 203762751 203763397 -78430267 + L2 LINE L2 2521 3313 0 358 255 53 0 chr1 203763433 203763527 -78430137 - MIR SINE MIR -116 146 48 528 258 6 67 chr1 203764122 203764300 -78429364 - MIR3 SINE MIR -26 182 16 198 317 69 0 chr1 203764434 203764535 -78429129 - MIR SINE MIR -70 192 85 456 200 0 0 chr1 203765987 203766082 -78427582 + (TG)n Simple_repeat Simple_repeat 2 96 0 182 314 88 10 chr1 203766586 203766688 -78426976 - MIR SINE MIR -70 192 83 183 381 48 0 chr1 203767736 203767841 -78425823 - MIR SINE MIR -99 163 54 236 274 108 20 chr1 203767941 203768043 -78425621 - MIR SINE MIR -74 134 23 264 100 0 0 chr1 203771050 203771090 -78422574 + (CA)n Simple_repeat Simple_repeat 1 40 0 481 157 15 0 chr1 203771405 203771539 -78422125 + (CA)n Simple_repeat Simple_repeat 2 137 0 781 206 50 40 chr1 203772163 203772362 -78421302 - MIR SINE MIR -18 244 44 542 328 78 11 chr1 203773242 203773422 -78420242 + MER91A DNA MER1_type 1 192 -4 203 273 15 45 chr1 203774491 203774557 -78419107 + L2 LINE L2 3209 3272 0 2116 100 4 0 chr1 203774669 203774978 -78418686 - AluSx SINE Alu 0 310 1 893 251 72 21 chr1 203775540 203775775 -78417889 + MIR SINE MIR 16 262 0 400 253 173 12 chr1 203777257 203777419 -78416245 - MIR SINE MIR -24 238 51 1816 149 45 0 chr1 203778124 203778413 -78415251 + AluSx SINE Alu 6 307 -5 187 272 19 0 chr1 203778884 203778987 -78414677 + (CATATA)n Simple_repeat Simple_repeat 2 106 0 234 253 0 36 chr1 203779024 203779107 -78414557 + (CATATA)n Simple_repeat Simple_repeat 6 85 0 198 191 0 0 chr1 203779113 203779160 -78414504 + (CA)n Simple_repeat Simple_repeat 2 48 0 1482 143 4 0 chr1 203779371 203779602 -78414062 + AluJo SINE Alu 81 312 0 498 300 72 33 chr1 203779729 203779909 -78413755 + MIR SINE MIR 37 223 -39 853 127 0 0 chr1 203781074 203781192 -78412472 + FLAM_C SINE Alu 1 118 -25 468 0 0 0 chr1 203787185 203787237 -78406427 + (TA)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr1 203789828 203789852 -78403812 + (CG)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr1 203790236 203790266 -78403398 + GC_rich Low_complexity Low_complexity 1 30 0 192 158 0 0 chr1 203791207 203791245 -78402419 + C-rich Low_complexity Low_complexity 4 41 0 211 143 16 63 chr1 203791397 203791460 -78402204 + (CGGGG)n Simple_repeat Simple_repeat 5 64 0 25 0 0 0 chr1 203791680 203791705 -78401959 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr1 203791836 203791864 -78401800 + GC_rich Low_complexity Low_complexity 1 28 0 489 325 78 12 chr1 203792777 203793112 -78400552 + L1ME4a LINE L1 5517 5873 -248 325 268 168 23 chr1 203793295 203793591 -78400073 + L1ME4a LINE L1 5617 5985 -136 340 82 82 0 chr1 203793591 203793652 -78400012 + L1MB4 LINE L1 6115 6180 0 325 268 168 23 chr1 203793652 203793747 -78399917 + L1ME4a LINE L1 5985 6065 -56 31 44 0 0 chr1 203793983 203794028 -78399636 + AT_rich Low_complexity Low_complexity 1 45 0 2141 97 10 13 chr1 203794330 203794641 -78399023 - AluSg SINE Alu 0 310 1 236 227 72 31 chr1 203794678 203794775 -78398889 + MIR SINE MIR 46 146 -62 351 306 45 25 chr1 203794871 203795028 -78398636 - MIR SINE MIR 0 262 103 436 268 93 32 chr1 203795455 203795674 -78397990 - MIR3 SINE MIR -1 261 12 919 221 50 0 chr1 203796488 203796710 -78396954 - MIR SINE MIR -6 256 24 2201 110 0 0 chr1 203796928 203797229 -78396435 + AluSx SINE Alu 1 301 -11 327 287 73 47 chr1 203798232 203798382 -78395282 - MIR SINE MIR -2 260 107 327 295 195 30 chr1 203798723 203798923 -78394741 + MIR SINE MIR 29 261 -1 211 308 63 44 chr1 203799161 203799320 -78394344 + MIR SINE MIR 57 218 -44 330 250 68 0 chr1 203799412 203799500 -78394164 - MER5A DNA MER1_type -80 109 16 1251 176 62 62 chr1 203799523 203799800 -78393864 + MER33 DNA MER1_type 1 282 -2303 2200 53 7 18 chr1 203799800 203800107 -78393557 + AluY SINE Alu 1 304 0 1251 176 62 62 chr1 203800107 203800151 -78393513 + MER33 DNA MER1_type 281 324 0 723 208 19 6 chr1 203800190 203800349 -78393315 - L1PA16 LINE L1 -24 6142 5982 1879 114 57 7 chr1 203802512 203802809 -78390855 + AluSx SINE Alu 1 312 0 2065 133 19 3 chr1 203803212 203803529 -78390135 + L1PA13 LINE L1 5839 6160 -3 203 219 0 0 chr1 203804356 203804397 -78389267 + MIR SINE MIR 69 109 -153 274 346 37 9 chr1 203804524 203804631 -78389033 + L2 LINE L2 3203 3312 -1 457 316 16 32 chr1 203805176 203805363 -78388301 - L3 LINE CR1 -2 1575 1392 1649 166 48 3 chr1 203805646 203805936 -78387728 - AluJb SINE Alu -9 303 1 541 137 0 0 chr1 203805969 203806042 -78387622 + tRNA-Val-GTT tRNA tRNA 1 73 -3 289 77 0 0 chr1 203806060 203806099 -78387565 + Alu SINE Alu 1 39 -264 2165 92 0 14 chr1 203806169 203806464 -78387200 + AluSc SINE Alu 1 291 -18 718 276 85 72 chr1 203806560 203807051 -78386613 + MLT1H LTR MaLR 19 549 0 2329 99 0 10 chr1 203807804 203808116 -78385548 - AluSg1 SINE Alu 0 309 1 1789 166 10 22 chr1 203808118 203808431 -78385233 - AluJo SINE Alu -3 309 1 360 241 106 58 chr1 203808447 203808654 -78385010 - L1MC/D LINE L1 -2016 5792 5576 286 238 184 108 chr1 203808875 203809207 -78384457 - L2 LINE L2 -5 3267 2911 2093 132 0 13 chr1 203809930 203810233 -78383431 + AluJo SINE Alu 1 299 -13 1479 160 0 8 chr1 203810881 203811125 -78382539 + AluJo SINE Alu 55 296 -16 290 257 59 26 chr1 203811125 203811277 -78382387 - L1MC/D LINE L1 -1500 4646 4490 2211 118 64 14 chr1 203811353 203811710 -78381954 - THE1C LTR MaLR 0 375 1 305 327 10 20 chr1 203811798 203811848 -78381816 - MIR SINE MIR -108 154 105 2234 114 3 7 chr1 203811848 203812146 -78381518 + AluSx SINE Alu 1 297 -15 305 327 10 20 chr1 203812146 203812196 -78381468 - MIR SINE MIR -157 105 55 216 299 92 35 chr1 203812496 203812670 -78380994 - L2 LINE L2 -903 2411 2228 255 284 240 34 chr1 203813281 203813349 -78380315 - MIR SINE MIR -10 252 199 225 0 0 0 chr1 203813349 203813374 -78380290 + (TC)n Simple_repeat Simple_repeat 1 25 0 1804 129 22 22 chr1 203813374 203813646 -78380018 - AluJb SINE Alu -32 280 9 255 284 240 34 chr1 203813646 203813780 -78379884 - MIR SINE MIR -62 200 7 412 298 61 79 chr1 203813915 203814194 -78379470 - L2 LINE L2 0 3272 2999 1689 170 0 7 chr1 203814354 203814636 -78379028 + AluJo SINE Alu 28 307 -5 368 291 34 0 chr1 203814853 203814970 -78378694 - L1ME LINE L1 -437 5684 5564 324 288 80 40 chr1 203815037 203815162 -78378502 - L1ME LINE L1 -712 5450 5321 295 214 125 30 chr1 203815169 203815337 -78378327 - L1ME4a LINE L1 -7 6114 5931 2324 68 4 0 chr1 203815357 203815668 -78377996 + AluY SINE Alu 1 312 0 252 0 0 0 chr1 203868189 203868217 -78325447 + (TA)n Simple_repeat Simple_repeat 1 28 0 19781 44 49 48 chr1 203870950 203873831 -78319833 - L1P LINE L1 -3264 2882 1 2247 85 4 0 chr1 203873832 203874104 -78319560 - AluSg SINE Alu -19 291 19 2384 146 100 29 chr1 203874104 203874592 -78319072 - MER44D DNA MER2_type -27 578 1 517 303 50 71 chr1 203875060 203875341 -78318323 + L2 LINE L2 2992 3266 -6 214 324 144 18 chr1 203878293 203878404 -78315260 + L2 LINE L2 3180 3304 -9 299 325 41 0 chr1 203878434 203878557 -78315107 + L2 LINE L2 2934 3061 -211 221 235 0 0 chr1 203882100 203882151 -78311513 - MIR SINE MIR -30 232 182 435 268 10 0 chr1 203882346 203882443 -78311221 - MIR SINE MIR -67 141 44 596 263 26 27 chr1 203882841 203883068 -78310596 - MIR SINE MIR -21 241 15 1494 107 10 10 chr1 203883959 203884165 -78309499 - AluSq SINE Alu -107 206 1 1016 111 23 23 chr1 203884167 203884339 -78309325 - AluSg/x SINE Alu -7 305 134 2639 34 0 0 chr1 203884340 203884638 -78309026 - AluY SINE Alu -13 298 1 207 300 77 53 chr1 203884657 203884827 -78308837 + L2 LINE L2 1362 1535 -1779 332 344 231 14 chr1 203885001 203885295 -78308369 + L2 LINE L2 2138 2367 -947 2070 97 34 20 chr1 203885295 203885593 -78308071 - AluSg SINE Alu -8 302 1 332 344 231 14 chr1 203885593 203885804 -78307860 + L2 LINE L2 2367 2753 -561 310 308 8 68 chr1 203885873 203886006 -78307658 + L1ME4a LINE L1 5930 6054 -67 183 80 0 0 chr1 203886020 203886045 -78307619 + (TAA)n Simple_repeat Simple_repeat 2 26 0 467 278 71 30 chr1 203886072 203886241 -78307423 - MIR SINE MIR -44 218 43 596 267 78 61 chr1 203886518 203887002 -78306662 + MLT1H LTR MaLR 19 545 -4 2303 100 0 10 chr1 203887758 203888067 -78305597 - AluSg1 SINE Alu -3 306 1 1764 156 19 35 chr1 203888069 203888383 -78305281 - AluJo SINE Alu -3 309 1 372 271 92 43 chr1 203888399 203888606 -78305058 - L1MC/D LINE L1 -2016 5792 5576 286 234 183 111 chr1 203888826 203889159 -78304505 - L2 LINE L2 -5 3267 2911 355 370 20 13 chr1 203889900 203890203 -78303461 - L1PA12 LINE L1 -7276 305 1 1833 185 30 105 chr1 203890203 203890397 -78303267 - MLT2B1 LTR ERVL -55 465 258 414 0 0 0 chr1 203890397 203890443 -78303221 + (ATG)n Simple_repeat Simple_repeat 3 48 0 1833 185 30 105 chr1 203890443 203890751 -78302913 - MLT2B1 LTR ERVL -262 258 1 2193 157 22 0 chr1 203891040 203891396 -78302268 + THE1B LTR MaLR 1 364 0 2199 59 5 131 chr1 203891396 203891784 -78301880 + THE1B-int LTR MaLR 1 339 -1241 504 374 19 5 chr1 203892594 203892808 -78300856 - MIR SINE MIR 0 262 46 286 309 233 19 chr1 203892847 203893109 -78300555 - L2 LINE L2 -541 2773 2456 249 214 54 0 chr1 203893257 203893313 -78300351 - MIR SINE MIR -114 148 90 1529 307 108 11 chr1 203894079 203894707 -78298957 - MER115 DNA AcHobo -3 690 2 321 267 0 12 chr1 203894708 203894794 -78298870 - L2 LINE L2 -277 3036 2952 272 155 28 70 chr1 203895811 203895882 -78297782 - MIR SINE MIR -43 219 152 859 305 105 16 chr1 203896321 203896770 -78296894 - LTR33 LTR ERVL 0 521 33 376 265 20 31 chr1 203896978 203897076 -78296588 - MIR3 SINE MIR -47 161 65 316 39 0 39 chr1 203897217 203897269 -78296395 + (CA)n Simple_repeat Simple_repeat 1 50 0 2482 216 44 14 chr1 203897875 203898510 -78295154 - Charlie1a DNA MER1_type -794 661 8 312 187 80 40 chr1 203898673 203898748 -78294916 + L1MB5 LINE L1 6087 6164 -10 246 195 0 0 chr1 203899336 203899377 -78294287 + Charlie5 DNA MER1_type 1 41 -2571 * 436 195 11 0 chr1 203899361 203899448 -78294216 - MER3 DNA MER1_type -121 88 1 263 326 22 29 chr1 203899553 203899691 -78293973 - L1ME LINE L1 -495 5675 5539 239 292 45 22 chr1 203900101 203900190 -78293474 - MIR SINE MIR 0 262 172 188 220 200 73 chr1 203901985 203902135 -78291529 - MIR SINE MIR -13 249 81 185 242 141 50 chr1 203902200 203902299 -78291365 - L2 LINE L2 -286 2986 2879 183 261 130 14 chr1 203902324 203902393 -78291271 + L2 LINE L2 3212 3288 -25 363 276 138 0 chr1 203902850 203903002 -78290662 - MIR3 SINE MIR -19 189 17 1321 141 60 6 chr1 203903427 203903852 -78289812 - LTR54 LTR ERV1 0 510 1 1776 229 40 19 chr1 203903853 203904333 -78289331 - MER57-int LTR ERV1 -394 7143 6654 1949 119 91 38 chr1 203904612 203904932 -78288732 + MER1B DNA MER1_type 1 337 0 287 256 26 68 chr1 203905109 203905226 -78288438 + L2 LINE L2 3161 3272 0 220 325 103 17 chr1 203906075 203906192 -78287472 - MIR3 SINE MIR -18 190 64 707 280 221 3 chr1 203906224 203906531 -78287133 - L2 LINE L2 -1 3312 2939 492 317 35 15 chr1 203906626 203906828 -78286836 + MIR SINE MIR 8 213 -49 196 299 196 0 chr1 203907851 203907948 -78285716 - MIR SINE MIR -145 117 2 968 204 48 0 chr1 203908325 203908531 -78285133 + MIR SINE MIR 24 239 -23 453 248 9 46 chr1 203909361 203909470 -78284194 + MIR3 SINE MIR 12 116 -92 373 306 45 25 chr1 203910007 203910164 -78283500 + MIR SINE MIR 103 262 0 241 227 72 31 chr1 203910260 203910357 -78283307 - MIR SINE MIR -62 146 46 2049 97 10 16 chr1 203910394 203910705 -78282959 + AluSg SINE Alu 1 309 -1 1794 138 10 17 chr1 203910829 203911126 -78282538 + AluJb SINE Alu 5 299 -13 1356 196 94 72 chr1 203911127 203911541 -78282123 + MLT1C LTR MaLR 40 462 -5 241 255 163 26 chr1 203912134 203912287 -78281377 - L2 LINE L2 -428 2886 2713 2102 113 0 3 chr1 203912442 203912744 -78280920 + AluSx SINE Alu 1 301 -11 193 274 16 65 chr1 203913045 203913107 -78280557 - MIR SINE MIR -112 96 38 1984 120 3 7 chr1 203914174 203914466 -78279198 + AluSc SINE Alu 1 291 -18 267 354 85 69 chr1 203914839 203915158 -78278506 - L2 LINE L2 -8 3264 2941 738 282 90 42 chr1 203915198 203915660 -78278004 + L2 LINE L2 2693 3197 -116 1883 70 0 0 chr1 203915660 203915902 -78277762 - L1PA6 LINE L1 -1 6153 5912 738 282 90 42 chr1 203915902 203915929 -78277735 + L2 LINE L2 3197 3221 -92 1196 28 35 0 chr1 203916139 203916283 -78277381 - L1PA6 LINE L1 -1 6153 6005 228 67 0 0 chr1 203917166 203917196 -78276468 + (CA)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr1 203917742 203917766 -78275898 + GC_rich Low_complexity Low_complexity 1 24 0 534 304 98 25 chr1 203918124 203918328 -78275336 - MIR SINE MIR -42 220 2 356 264 113 0 chr1 203918453 203918559 -78275105 - MIR3 SINE MIR -6 202 85 735 365 35 6 chr1 203918909 203919254 -78274410 - L3 LINE CR1 -11 1566 1212 366 319 76 45 chr1 203919296 203919718 -78273946 - MLT1J LTR MaLR -35 476 1 607 341 40 9 chr1 203920295 203920521 -78273143 - MIR SINE MIR -12 250 18 208 418 0 0 chr1 203920578 203920645 -78273019 - L2 LINE L2 -6 3307 3241 399 307 122 16 chr1 203920659 203920848 -78272816 + L2 LINE L2 1372 1580 -1734 183 243 0 0 chr1 203921579 203921616 -78272048 + L2 LINE L2 2703 2739 -575 352 225 0 56 chr1 203923193 203923282 -78270382 + L1MB8 LINE L1 6093 6176 -2 314 394 44 0 chr1 203923857 203924037 -78269627 + MIR SINE MIR 20 207 -55 294 336 26 17 chr1 203924592 203924708 -78268956 - MIR3 SINE MIR -49 159 43 739 249 75 30 chr1 203924708 203925114 -78268550 + MLT1J LTR MaLR 1 467 -44 233 260 58 77 chr1 203925255 203925359 -78268305 - L2 LINE L2 -2 3311 3210 887 297 106 23 chr1 203925505 203925986 -78267678 + LTR33 LTR ERVL 1 521 0 288 264 35 0 chr1 204026140 204026227 -78167437 + L1MC4 LINE L1 7790 7879 -163 27 0 0 0 chr1 204026301 204026328 -78167336 + AT_rich Low_complexity Low_complexity 1 27 0 181 437 0 0 chr1 204026649 204026720 -78166944 + L2 LINE L2 2560 2630 -684 253 301 29 59 chr1 204028005 204028141 -78165523 + L2 LINE L2 3149 3280 -33 196 344 83 57 chr1 204028339 204028496 -78165168 + L2 LINE L2 3075 3235 -37 30 45 0 0 chr1 204028907 204028951 -78164713 + AT_rich Low_complexity Low_complexity 1 44 0 361 365 12 36 chr1 204029195 204029362 -78164302 + MER115 DNA AcHobo 261 423 -270 274 121 17 52 chr1 204029357 204029415 -78164249 + MER115 DNA AcHobo 638 693 0 * 1289 127 152 28 chr1 204029634 204029917 -78163747 + MER44D DNA MER2_type 1 588 -21 2297 172 31 2 chr1 204029918 204030394 -78163270 + L1P LINE L1 4889 5378 -768 669 263 148 9 chr1 204031585 204031802 -78161862 - MIR SINE MIR -1 261 15 2288 104 7 10 chr1 204032508 204032816 -78160848 + AluSc SINE Alu 2 308 -1 709 237 71 30 chr1 204033625 204033823 -78159841 + MIR SINE MIR 15 220 -42 180 0 0 0 chr1 204035120 204035140 -78158524 + (T)n Simple_repeat Simple_repeat 1 20 0 34 0 0 0 chr1 204035275 204035309 -78158355 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1 204035322 204035352 -78158312 + AT_rich Low_complexity Low_complexity 1 30 0 389 289 257 8 chr1 204035702 204035955 -78157709 - L2 LINE L2 0 3313 2998 217 368 8 56 chr1 204036047 204036172 -78157492 - MER5B DNA MER1_type 0 178 60 219 284 68 45 chr1 204036082 204036170 -78157494 + MER5A DNA MER1_type 47 136 -53 671 147 9 0 chr1 204036439 204036548 -78157116 + AluSq/x SINE Alu 1 110 -202 565 158 0 0 chr1 204036556 204036664 -78157000 + FLAM_A SINE Alu 37 144 0 862 146 19 6 chr1 204036682 204036840 -78156824 - L1MB3 LINE L1 -84 6099 5940 3628 101 48 11 chr1 204036943 204037490 -78156174 + L1PA11 LINE L1 5594 6160 -14 8155 131 71 14 chr1 204037490 204038981 -78154683 + Tigger2 DNA MER2_type 1142 2717 -1 319 200 112 8 chr1 204039064 204039189 -78154475 - MER104 DNA Tc2 -41 139 2 2532 41 0 0 chr1 204039245 204039536 -78154128 - AluY SINE Alu -20 291 1 21 36 0 0 chr1 204040586 204040614 -78153050 + AT_rich Low_complexity Low_complexity 1 28 0 2313 93 0 0 chr1 204041464 204041777 -78151887 - AluSg SINE Alu 0 310 1 325 331 49 49 chr1 204042583 204042746 -78150918 + MIR SINE MIR 49 211 -51 210 150 0 0 chr1 204042867 204042907 -78150757 + (A)n Simple_repeat Simple_repeat 1 40 0 25 0 0 0 chr1 204043301 204043326 -78150338 + AT_rich Low_complexity Low_complexity 1 25 0 216 182 18 55 chr1 204043847 204043902 -78149762 - L2 LINE L2 -4 3309 3257 2182 102 0 14 chr1 204044843 204045136 -78148528 + AluSq SINE Alu 1 289 -24 287 179 15 30 chr1 204045820 204045887 -78147777 + L1MCc LINE L1 17 82 -6341 1248 80 0 0 chr1 204045893 204046043 -78147621 - AluY SINE Alu -161 150 1 1020 207 47 9 chr1 204046160 204046373 -78147291 + AluSg/x SINE Alu 83 303 -7 206 200 0 0 chr1 204046491 204046531 -78147133 - L3 LINE CR1 -391 1186 1147 261 0 0 0 chr1 204046681 204046710 -78146954 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1703 152 80 0 chr1 204046716 204046979 -78146685 - AluJb SINE Alu -28 284 1 726 189 60 0 chr1 204046979 204047147 -78146517 - MLT1E1 LTR MaLR 0 654 429 278 259 125 9 chr1 204047553 204047665 -78145999 - MLT1E1 LTR MaLR -529 125 1 297 336 114 24 chr1 204047668 204047966 -78145698 - L3 LINE CR1 -544 1033 709 393 294 87 24 chr1 204048386 204048638 -78145026 - L1ME LINE L1 -342 5779 5512 509 273 97 0 chr1 204049267 204049421 -78144243 + MIR SINE MIR 84 252 -10 762 164 8 0 chr1 204050109 204050237 -78143427 - FLAM_C SINE Alu -4 129 1 6970 156 21 50 chr1 204050691 204051525 -78142139 + L1M2 LINE L1 1470 2326 -4522 1626 201 43 0 chr1 204051525 204051824 -78141840 + AluJb SINE Alu 1 312 0 6970 156 21 50 chr1 204051824 204052893 -78140771 + L1M2 LINE L1 2326 3319 -3529 1788 155 28 21 chr1 204055512 204055803 -78137861 - AluJo SINE Alu -13 299 7 21 0 0 0 chr1 204055922 204055943 -78137721 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr1 204055994 204056024 -78137640 + AT_rich Low_complexity Low_complexity 1 30 0 534 271 35 62 chr1 204056749 204057007 -78136657 - Charlie2 DNA MER1_type -2605 257 7 243 245 250 3 chr1 204058304 204058688 -78134976 - L2 LINE L2 -2208 1106 628 200 330 50 0 chr1 204059463 204059590 -78134074 + MIR SINE MIR 39 170 -67 346 153 17 0 chr1 204059719 204059778 -78133886 + AluJ/FLAM SINE Alu 1 60 -242 1363 175 51 16 chr1 204059989 204060246 -78133418 + AluJo SINE Alu 11 276 -36 222 118 0 0 chr1 204060885 204060919 -78132745 + (A)n Simple_repeat Simple_repeat 1 34 0 201 74 0 0 chr1 204061292 204061319 -78132345 + (GAAAA)n Simple_repeat Simple_repeat 1 27 0 213 175 0 0 chr1 204061378 204061418 -78132246 + (TTCG)n Simple_repeat Simple_repeat 2 41 0 184 265 0 0 chr1 204061418 204061467 -78132197 - L2 LINE L2 0 3313 3265 1744 129 55 7 chr1 204062588 204062859 -78130805 - AluJb SINE Alu -26 286 3 19993 132 58 16 chr1 204063009 204066802 -78126862 - L1 LINE L1 -3590 3975 20 227 203 0 51 chr1 204067410 204067489 -78126175 - L1MC4 LINE L1 -1353 6689 6615 225 94 0 0 chr1 204067489 204067521 -78126143 + (CA)n Simple_repeat Simple_repeat 1 32 0 27 29 0 0 chr1 204067778 204067812 -78125852 + AT_rich Low_complexity Low_complexity 1 34 0 1460 188 24 55 chr1 204069324 204069645 -78124019 + AluJo SINE Alu 1 312 0 310 275 47 102 chr1 204070935 204071171 -78122493 + L2 LINE L2 2357 2579 -735 431 134 49 12 chr1 204071171 204071253 -78122411 + MLT1C LTR MaLR 1 85 -382 458 168 42 14 chr1 204071257 204071421 -78122243 + MLT1C LTR MaLR 259 466 -1 465 308 62 54 chr1 204071422 204071526 -78122138 + L2 LINE L2 2575 2677 -637 3608 117 31 4 chr1 204071526 204072039 -78121625 + MER1A DNA MER1_type 1 527 0 465 308 62 54 chr1 204072039 204072158 -78121506 + L2 LINE L2 2677 2800 -514 610 109 0 130 chr1 204072159 204072297 -78121367 - Charlie1 DNA MER1_type -1 2760 2641 42 48 0 0 chr1 204072627 204072690 -78120974 + AT_rich Low_complexity Low_complexity 1 63 0 201 74 0 0 chr1 204073199 204073226 -78120438 + (T)n Simple_repeat Simple_repeat 1 27 0 237 183 312 21 chr1 204075094 204075187 -78118477 + L1MC5 LINE L1 7805 7924 -37 827 316 75 26 chr1 204076341 204076661 -78117003 + L3 LINE CR1 1208 1548 -29 2255 112 0 0 chr1 204076661 204076965 -78116699 - AluY SINE Alu -7 304 1 827 316 75 26 chr1 204076965 204076992 -78116672 + L3 LINE CR1 1548 1572 -5 268 344 67 0 chr1 204076995 204077085 -78116579 - MIR SINE MIR -162 100 5 474 256 134 20 chr1 204077102 204077348 -78116316 - MER102b DNA MER1_type -32 309 36 21 0 0 0 chr1 204078647 204078668 -78114996 + AT_rich Low_complexity Low_complexity 1 21 0 2064 85 21 14 chr1 204078692 204079003 -78114661 - AluSq SINE Alu 0 313 1 826 132 0 0 chr1 204080938 204081059 -78112605 + AluSq/x SINE Alu 1 121 -192 252 167 0 0 chr1 204081270 204081318 -78112346 + (CA)n Simple_repeat Simple_repeat 2 49 0 2888 208 47 16 chr1 204081483 204082780 -78110884 - L1MB7 LINE L1 -255 5929 4588 * 7856 38 5 2 chr1 204082777 204084418 -78109246 + L1PA4 LINE L1 4370 6016 -139 2246 264 123 28 chr1 204084518 204085282 -78108382 - L2 LINE L2 -1353 1961 1125 241 229 229 52 chr1 204085272 204085368 -78108296 - L2 LINE L2 -4 3309 3197 * 363 273 161 9 chr1 204085374 204085696 -78107968 + L1ME4a LINE L1 5713 6083 -38 576 210 250 0 chr1 204085703 204085903 -78107761 + L2 LINE L2 1657 1906 -1408 192 212 0 0 chr1 204086649 204086682 -78106982 + L2 LINE L2 3265 3297 -16 23 0 0 0 chr1 204086741 204086764 -78106900 + AT_rich Low_complexity Low_complexity 1 23 0 692 126 45 0 chr1 204086933 204087044 -78106620 - Tigger5 DNA MER2_type 0 2323 2208 2141 131 0 0 chr1 204087056 204087354 -78106310 - AluSx SINE Alu -14 298 1 905 203 7 30 chr1 204087354 204087386 -78106278 - L1MEc LINE L1 -3997 2399 2368 1511 191 46 53 chr1 204087386 204087779 -78105885 - MLT1B LTR MaLR 0 390 1 905 203 7 30 chr1 204087779 204088017 -78105647 - L1MEc LINE L1 -4028 2368 2135 * 5600 166 38 7 chr1 204088011 204089428 -78104236 - L1MA4A LINE L1 -53 6250 4785 15481 33 5 16 chr1 204089633 204091683 -78101981 - L1P LINE L1 -873 5273 3246 198 0 0 0 chr1 204092688 204092710 -78100954 + (A)n Simple_repeat Simple_repeat 1 22 0 1877 144 20 30 chr1 204092863 204093168 -78100496 - AluJo SINE Alu -10 302 1 302 274 0 73 chr1 204094054 204094178 -78099486 - MIR SINE MIR -78 130 16 456 200 0 0 chr1 204095865 204095960 -78097704 + (TG)n Simple_repeat Simple_repeat 2 96 0 648 295 119 11 chr1 204097479 204097747 -78095917 - L2 LINE L2 -15 3298 3002 247 48 0 48 chr1 204097934 204097976 -78095688 + L1MA5 LINE L1 6256 6295 -5 1852 133 17 0 chr1 204097986 204098287 -78095377 + L1MB3 LINE L1 5876 6181 -2 1858 117 55 48 chr1 204098651 204098960 -78094704 + AluSx SINE Alu 1 311 -1 626 281 83 44 chr1 204099034 204099419 -78094245 - L1MEc LINE L1 -5225 980 581 556 232 0 19 chr1 204099677 204099832 -78093832 - L1MEc LINE L1 -5966 239 88 605 304 174 9 chr1 204099837 204100067 -78093597 + L2 LINE L2 3005 3272 0 538 140 19 9 chr1 204100117 204100224 -78093440 - L1MA2 LINE L1 0 6304 6197 224 274 108 20 chr1 204100956 204101058 -78092606 - MIR SINE MIR -74 134 23 2252 97 3 3 chr1 204103720 204104051 -78089613 - L1PA3 LINE L1 -62 6093 5763 275 193 182 11 chr1 204104137 204104225 -78089439 - MLT1H LTR MaLR 0 549 307 349 308 75 27 chr1 204104534 204104680 -78088984 - MIR SINE MIR -51 211 59 21 0 0 0 chr1 204105655 204105676 -78087988 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 204105739 204105761 -78087903 + AT_rich Low_complexity Low_complexity 1 22 0 1071 206 40 9 chr1 204105918 204106146 -78087518 + MER46A DNA MER2_type 1 235 -1 2252 66 10 43 chr1 204206834 204207139 -77986525 + THE1A LTR MaLR 61 355 0 3798 71 12 2 chr1 204207139 204207631 -77986033 + THE1A-int LTR MaLR 1 497 -1083 2475 80 0 0 chr1 204207631 204207930 -77985734 + AluSg SINE Alu 1 299 -11 630 226 109 0 chr1 204207971 204208178 -77985486 - MIR SINE MIR 0 262 35 33 0 0 0 chr1 204209704 204209737 -77983927 + AT_rich Low_complexity Low_complexity 1 33 0 2159 131 0 0 chr1 204209744 204210042 -77983622 + AluSq SINE Alu 1 298 -15 3652 148 93 6 chr1 204211377 204212031 -77981633 - MER50 LTR ERV1 -23 711 1 489 256 31 16 chr1 204212030 204212159 -77981505 + MER94 DNA DNA 2 132 -2 * 787 144 92 6 chr1 204212248 204212422 -77981242 - MER53 DNA DNA 0 189 1 688 250 41 6 chr1 204212772 204212944 -77980720 + MER5B DNA MER1_type 1 178 0 378 293 0 0 chr1 204213701 204213783 -77979881 - L2 LINE L2 -18 3254 3173 299 29 0 0 chr1 204213910 204213945 -77979719 - U2 snRNA snRNA -153 35 1 412 342 7 20 chr1 204214952 204215101 -77978563 + MIR SINE MIR 8 154 -108 356 295 45 25 chr1 204215335 204215535 -77978129 - MARNA DNA Mariner -376 210 7 4066 203 193 31 chr1 204216747 204217167 -77976497 + L1MC4 LINE L1 6459 6810 -1232 1574 242 106 15 chr1 204217167 204217630 -77976034 + MLT1D LTR MaLR 1 505 0 4066 203 193 31 chr1 204217630 204217792 -77975872 + L1MC4 LINE L1 6810 6944 -1098 2018 163 0 3 chr1 204217792 204218105 -77975559 + AluJb SINE Alu 1 312 0 4066 203 193 31 chr1 204218105 204218884 -77974780 + L1MC4 LINE L1 6944 8042 0 365 215 103 0 chr1 204218967 204219074 -77974590 + MIR SINE MIR 20 137 -125 644 202 17 45 chr1 204219175 204219353 -77974311 + L1MB8 LINE L1 5999 6171 -7 450 236 6 112 chr1 204220155 204220316 -77973348 - MLT1J LTR MaLR -359 152 9 579 322 93 73 chr1 204220323 204221318 -77972346 + L2 LINE L2 2243 3272 0 2095 134 3 0 chr1 204221634 204221932 -77971732 + AluSq SINE Alu 3 301 -12 1321 161 96 20 chr1 204221937 204222186 -77971478 + AluJo SINE Alu 1 268 -44 1534 174 70 24 chr1 204223013 204223451 -77970213 - AluJo SINE Alu 0 452 1 281 339 65 8 chr1 204223462 204223586 -77970078 - L2 LINE L2 0 3272 3142 363 23 0 0 chr1 204223591 204223635 -77970029 + (CA)n Simple_repeat Simple_repeat 2 45 0 2493 133 22 0 chr1 204224380 204224785 -77968879 + LTR26B LTR ERV1 1 414 -117 1601 166 157 91 chr1 204224807 204225259 -77968405 - MLT2B3 LTR ERVL -38 496 1 449 240 62 2 chr1 204225585 204225783 -77967881 + MLT1K LTR MaLR 344 583 -5 1619 176 0 33 chr1 204226050 204226357 -77967307 - AluJo SINE Alu -5 307 11 1854 148 65 34 chr1 204226369 204226754 -77966910 + MSTA LTR MaLR 23 419 -9 1753 216 53 13 chr1 204226754 204227350 -77966314 - L1ME LINE L1 -462 5704 5083 1616 216 19 64 chr1 204227588 204228056 -77965608 + MER31B LTR ERV1 1 447 -19 346 349 42 0 chr1 204228054 204228246 -77965418 - LTR16A LTR ERVL -52 398 199 * 1521 116 0 0 chr1 204228700 204228898 -77964766 + AluSx SINE Alu 1 198 -114 180 0 0 0 chr1 204228924 204228944 -77964720 + (A)n Simple_repeat Simple_repeat 1 20 0 1636 161 30 37 chr1 204228955 204229254 -77964410 + AluJo SINE Alu 1 297 -15 762 109 8 25 chr1 204229509 204229628 -77964036 + FLAM_C SINE Alu 1 117 -26 247 337 58 12 chr1 204229706 204229792 -77963872 - MIR SINE MIR -88 120 31 * 365 329 105 26 chr1 204229781 204230124 -77963540 + L2 LINE L2 2425 2794 -520 660 271 111 73 chr1 204230143 204230275 -77963389 - MLT1L LTR MaLR -32 583 457 2181 119 0 25 chr1 204230275 204230593 -77963071 - AluSx SINE Alu -2 310 1 660 271 111 73 chr1 204230593 204230897 -77962767 - MLT1L LTR MaLR -158 457 121 1925 210 5 25 chr1 204230897 204231301 -77962363 + MSTD LTR MaLR 1 396 0 660 271 111 73 chr1 204231301 204231394 -77962270 - MLT1L LTR MaLR -494 121 33 277 355 141 23 chr1 204231445 204231707 -77961957 + L2 LINE L2 2805 3097 -175 262 167 37 0 chr1 204231704 204231758 -77961906 + L2 LINE L2 3254 3309 -4 * 2222 69 0 56 chr1 204231949 204232269 -77961395 + AluY SINE Alu 1 302 -9 627 267 59 29 chr1 204232453 204232724 -77960940 + L1ME1 LINE L1 3232 3494 -2652 2245 120 0 22 chr1 204232724 204233041 -77960623 + AluSx SINE Alu 1 310 -2 2102 123 0 7 chr1 204233045 204233337 -77960327 + AluSx SINE Alu 1 290 -22 627 267 59 29 chr1 204233337 204233434 -77960230 + L1ME1 LINE L1 3496 3616 -2530 1390 190 16 68 chr1 204233434 204233812 -77959852 + MLT1A1 LTR MaLR 1 363 -2 4758 211 65 48 chr1 204233814 204234499 -77959165 + L1ME1 LINE L1 3612 4284 -1899 1665 148 110 0 chr1 204234499 204234762 -77958902 + AluSx SINE Alu 1 292 -20 4758 211 65 48 chr1 204234762 204235894 -77957770 + L1ME1 LINE L1 4284 5440 -743 489 163 74 22 chr1 204235890 204236025 -77957639 + L1MB7 LINE L1 6043 6184 0 * 2523 237 41 14 chr1 204236023 204236200 -77957464 + L1ME1 LINE L1 5420 5591 -575 2202 132 3 0 chr1 204236200 204236511 -77957153 + AluSx SINE Alu 1 312 0 2523 237 41 14 chr1 204236511 204237038 -77956626 + L1ME1 LINE L1 5591 6143 -23 765 187 78 0 chr1 204237532 204237698 -77955966 + LTR47A LTR ERVL 274 452 0 195 42 0 0 chr1 204237733 204237757 -77955907 + (CCCCAA)n Simple_repeat Simple_repeat 6 29 0 218 260 0 0 chr1 204237857 204237907 -77955757 + MIR SINE MIR 183 232 -30 290 319 24 66 chr1 204237966 204238132 -77955532 + MIR3 SINE MIR 36 194 -14 452 371 98 46 chr1 204238234 204238582 -77955082 + L2 LINE L2 2900 3265 -7 262 307 79 18 chr1 204238580 204238694 -77954970 + L3 LINE CR1 1417 1537 -40 * 247 125 18 71 chr1 204239534 204239590 -77954074 - MLT1C LTR MaLR -357 110 58 255 244 30 101 chr1 204239594 204239762 -77953902 + L2 LINE L2 1899 2054 -1260 2625 119 25 25 chr1 204239889 204240333 -77953331 + LOR1a LTR ERV1 54 497 0 200 147 0 0 chr1 204240336 204240370 -77953294 + L2 LINE L2 2327 2360 -954 841 279 19 31 chr1 204240381 204240639 -77953025 + MIR SINE MIR 8 262 0 212 388 94 14 chr1 204240658 204240944 -77952720 + L2 LINE L2 2364 2672 -642 3663 131 42 66 chr1 204241178 204241966 -77951698 + LTR1 LTR ERV1 1 769 -16 2353 106 0 0 chr1 204242188 204242491 -77951173 - AluSx SINE Alu -9 303 1 1255 160 77 28 chr1 204242527 204242765 -77950899 + MER33 DNA MER1_type 1 245 -2340 1983 164 134 7 chr1 204242765 204243174 -77950490 + LOR1b LTR ERV1 1 461 0 1255 160 77 28 chr1 204243174 204243256 -77950408 + MER33 DNA MER1_type 245 322 -2 1536 174 4 15 chr1 204243476 204243741 -77949923 + AluJo SINE Alu 42 303 -9 5150 130 23 44 chr1 204244056 204245534 -77948130 + L1PA15 LINE L1 4699 6143 -22 365 358 8 0 chr1 204245627 204245747 -77947917 + MIR SINE MIR 28 148 -114 295 318 182 0 chr1 204245804 204245936 -77947728 + MER5A DNA MER1_type 34 189 0 3084 75 28 5 chr1 204246288 204246725 -77946939 + MER41A LTR ERV1 1 447 -107 1235 126 5 24 chr1 204246752 204246958 -77946706 - AluSq SINE Alu -25 288 87 442 190 13 0 chr1 204247061 204247140 -77946524 - AluJ/FLAM SINE Alu -224 88 9 372 235 46 7 chr1 204247182 204247335 -77946329 - L1M4 LINE L1 -2928 3218 3060 525 329 79 28 chr1 204247700 204247749 -77945915 + L3 LINE CR1 320 365 -1212 2392 106 0 0 chr1 204247749 204248052 -77945612 - AluSq SINE Alu -10 303 1 525 329 79 28 chr1 204248052 204248254 -77945410 + L3 LINE CR1 365 584 -993 264 307 29 33 chr1 204248255 204248387 -77945277 + MER5A DNA MER1_type 12 133 -45 582 217 93 0 chr1 204248442 204248571 -77945093 - MER63A DNA MER1_type -1 209 69 626 62 0 0 chr1 204248611 204248691 -77944973 - MADE1 DNA Mariner 0 80 1 442 321 227 23 chr1 204248698 204249305 -77944359 + L3 LINE CR1 803 1533 -44 600 249 16 70 chr1 204249305 204249429 -77944235 + MER5B DNA MER1_type 1 113 -65 2371 91 0 0 chr1 204249429 204249726 -77943938 - AluSg SINE Alu -13 297 1 600 249 16 70 chr1 204249726 204249786 -77943878 + MER5B DNA MER1_type 113 175 -3 228 289 0 0 chr1 204250166 204250242 -77943422 + L1MC5 LINE L1 7820 7895 -66 837 139 0 13 chr1 204250352 204250510 -77943154 - L1MA5 LINE L1 0 6300 6145 28 0 0 0 chr1 204250963 204250991 -77942673 + AT_rich Low_complexity Low_complexity 1 28 0 951 202 39 0 chr1 204251299 204251477 -77942187 + MER5A DNA MER1_type 2 186 -3 1891 137 53 3 chr1 204251662 204251947 -77941717 + AluSq SINE Alu 1 299 -14 1842 144 57 43 chr1 204252320 204252688 -77940976 + Tigger2a DNA MER2_type 1 373 -61 1304 181 0 22 chr1 204252690 204252922 -77940742 + AluJb SINE Alu 1 227 -85 1450 83 0 0 chr1 204252922 204253103 -77940561 - AluSg1 SINE Alu -128 181 1 24 53 0 0 chr1 204253915 204253953 -77939711 + AT_rich Low_complexity Low_complexity 1 38 0 220 256 37 85 chr1 204254894 204254976 -77938688 - L2 LINE L2 -189 3083 3006 775 213 56 52 chr1 204254976 204255244 -77938420 - ORSL DNA AcHobo 0 275 7 22 35 0 0 chr1 204255529 204255558 -77938106 + AT_rich Low_complexity Low_complexity 1 29 0 197 374 139 0 chr1 204256720 204256835 -77936829 - L2 LINE L2 -3 3269 3139 2243 108 0 16 chr1 204256992 204257298 -77936366 + AluSx SINE Alu 1 301 -11 2020 111 4 0 chr1 204257307 204257577 -77936087 + AluSq SINE Alu 23 293 -20 22 0 0 0 chr1 204257624 204257646 -77936018 + AT_rich Low_complexity Low_complexity 1 22 0 1632 127 25 79 chr1 204259512 204259827 -77933837 + AluJb SINE Alu 1 298 -14 825 293 8 8 chr1 204260819 204261078 -77932586 + MLT1I LTR MaLR 17 275 -134 299 220 23 102 chr1 204261212 204261301 -77932363 + L1MB7 LINE L1 5314 5384 -2424 2113 99 10 10 chr1 204261301 204261595 -77932069 + AluY SINE Alu 1 294 -17 299 220 23 102 chr1 204261595 204261682 -77931982 + L1MB7 LINE L1 5384 5476 -2332 822 128 83 15 chr1 204261700 204261833 -77931831 + FRAM SINE Alu 23 164 -12 1375 140 5 0 chr1 204261924 204262138 -77931526 - AluSg/x SINE Alu -13 297 83 839 198 15 69 chr1 204262287 204262489 -77931175 + MLT2B2 LTR ERVL 285 475 -40 321 130 0 0 chr1 204262534 204262588 -77931076 + MLT2B2 LTR ERVL 466 519 -1 630 187 14 7 chr1 204262588 204262727 -77930937 + L1MB7 LINE L1 6026 6165 -19 256 314 23 12 chr1 204263120 204263206 -77930458 + MIR SINE MIR 62 148 -60 249 319 302 6 chr1 204264022 204264191 -77929473 + MIR SINE MIR 20 238 -24 506 190 10 0 chr1 204264329 204264429 -77929235 + MER45 DNA AcHobo 1481 1581 0 1657 151 8 0 chr1 204264731 204264990 -77928674 - AluJo SINE Alu -15 297 37 198 71 0 0 chr1 204265094 204265122 -77928542 + (TC)n Simple_repeat Simple_repeat 2 29 0 1884 146 3 3 chr1 204266573 204266874 -77926790 + AluSg SINE Alu 2 302 -8 264 312 89 25 chr1 204267910 204268067 -77925597 + L2 LINE L2 1748 1914 -1400 294 259 35 0 chr1 204268919 204269004 -77924660 - L2 LINE L2 -189 3083 2996 227 163 50 0 chr1 204269169 204269249 -77924415 + CT-rich Low_complexity Low_complexity 1 84 0 189 191 85 21 chr1 204269297 204269344 -77924320 - L2 LINE L2 -1 3312 3263 * 523 331 24 36 chr1 204269314 204269562 -77924102 - MIR SINE MIR -16 246 2 21 71 0 0 chr1 204269761 204269803 -77923861 + AT_rich Low_complexity Low_complexity 1 42 0 264 303 92 31 chr1 204270051 204270260 -77923404 - L1ME4a LINE L1 -17 6104 5878 189 0 0 0 chr1 204270260 204270281 -77923383 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 264 303 92 31 chr1 204270281 204270299 -77923365 - L1ME4a LINE L1 -243 5878 5863 728 211 0 8 chr1 204271731 204271864 -77921800 - MER94 DNA DNA 0 134 3 189 0 0 0 chr1 204272026 204272047 -77921617 + (CA)n Simple_repeat Simple_repeat 2 22 0 396 250 128 26 chr1 204272082 204272238 -77921426 + L1MC4a LINE L1 5724 5895 -1913 2210 109 0 10 chr1 204272590 204272884 -77920780 - AluSx SINE Alu -21 291 1 606 81 12 12 chr1 204272959 204273045 -77920619 + AluSg SINE Alu 2 87 -223 624 321 110 17 chr1 204273253 204273661 -77920003 - L2 LINE L2 -1021 2293 1848 657 152 0 0 chr1 204274104 204274203 -77919461 - L1M3 LINE L1 -495 5685 5587 1788 267 44 19 chr1 204274255 204274301 -77919363 - L2 LINE L2 -630 2684 2641 2062 198 16 65 chr1 204274301 204274792 -77918872 - MLT1C LTR MaLR 0 467 1 1788 267 44 19 chr1 204274792 204275265 -77918399 - L2 LINE L2 -673 2641 2152 558 167 0 0 chr1 204275268 204275346 -77918318 + AluJ/FLAM SINE Alu 3 80 -232 270 212 91 0 chr1 204275348 204275414 -77918250 - L2 LINE L2 -1153 2161 2090 475 315 51 5 chr1 204275419 204275635 -77918029 - L2 LINE L2 -1480 1834 1609 246 247 82 0 chr1 204275707 204275792 -77917872 + HAL1b LINE L1 1233 1324 -24 2208 129 3 0 chr1 204275938 204276248 -77917416 + AluSx SINE Alu 1 311 -1 250 189 19 0 chr1 204276826 204276879 -77916785 - MIR SINE MIR -108 154 101 1856 123 33 43 chr1 204277149 204277451 -77916213 + AluSx SINE Alu 1 299 -13 289 316 0 0 chr1 204277609 204277704 -77915960 + LTR67 LTR ERVL 458 552 -5 2061 288 71 40 chr1 204277754 204278600 -77915064 + ERVL LTR ERVL 4069 4940 -824 748 261 35 18 chr1 204278592 204278818 -77914846 + ERVL LTR ERVL 5189 5418 -346 * 2749 124 3 3 chr1 204279151 204279515 -77914149 - THE1B LTR MaLR 0 364 1 2122 120 0 29 chr1 204279774 204280083 -77913581 - AluSx SINE Alu -12 300 1 2166 112 0 0 chr1 204280376 204280661 -77913003 - AluSx SINE Alu -26 286 2 1527 163 27 31 chr1 204281413 204281707 -77911957 + AluJo SINE Alu 1 293 -19 205 261 174 11 chr1 204281940 204282032 -77911632 + MIR SINE MIR 107 213 -49 19617 91 18 3 chr1 204282049 204284650 -77909014 - Charlie3 DNA MER1_type -4 2706 68 1077 144 48 58 chr1 204284646 204284854 -77908810 - MER7C DNA MER2_type -395 207 2 * 2188 113 0 13 chr1 204284987 204285296 -77908368 + AluSx SINE Alu 1 305 -7 700 222 22 22 chr1 204285311 204285496 -77908168 + MER3 DNA MER1_type 10 194 -15 210 171 0 0 chr1 204285569 204285610 -77908054 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 302 287 0 77 chr1 204285739 204285882 -77907782 + MER5A DNA MER1_type 2 133 -56 2119 129 0 3 chr1 204285883 204286178 -77907486 - AluSx SINE Alu -18 294 1 582 112 47 0 chr1 204287016 204287236 -77906428 + (TA)n Simple_repeat Simple_repeat 1 230 0 3219 128 40 0 chr1 204287237 204287738 -77905926 + L1MA3 LINE L1 5785 6305 0 655 206 88 21 chr1 204287794 204287988 -77905676 + L1MB3 LINE L1 4980 5186 -960 1039 174 0 0 chr1 204287989 204288156 -77905508 + AluJb SINE Alu 134 300 -12 4248 144 63 56 chr1 204288163 204289165 -77904499 + L1MB3 LINE L1 5176 6181 -2 249 298 87 25 chr1 204289177 204289338 -77904326 - L2 LINE L2 -1308 2006 1836 330 343 105 0 chr1 204289393 204289536 -77904128 - MIR SINE MIR 0 262 105 2061 160 71 24 chr1 204289544 204290037 -77903627 + MER44D DNA MER2_type 1 605 0 2011 206 32 19 chr1 204290364 204290797 -77902867 + MLT1F LTR MaLR 104 542 0 2224 104 0 7 chr1 204291250 204291547 -77902117 - AluSx SINE Alu -17 295 1 755 155 63 46 chr1 204291951 204292125 -77901539 - MER104 DNA MER2_type -3 177 1 2104 87 48 14 chr1 204292163 204292452 -77901212 + AluSq SINE Alu 3 301 -12 360 288 96 23 chr1 204292617 204292794 -77900870 - MIR SINE MIR -2 260 71 1009 171 6 0 chr1 204293156 204293320 -77900344 + FRAM SINE Alu 1 164 -12 509 223 83 72 chr1 204293342 204293535 -77900129 + HAL1 LINE L1 4 198 -2309 19159 141 35 30 chr1 204293702 204294574 -77899090 - L1 LINE L1 -3251 4314 3448 387 0 0 0 chr1 204294574 204294617 -77899047 + (TG)n Simple_repeat Simple_repeat 1 43 0 19159 141 35 30 chr1 204294617 204294685 -77898979 - L1 LINE L1 -4117 3448 3382 2162 125 0 16 chr1 204294685 204294998 -77898666 + AluSx SINE Alu 1 308 -4 19159 141 35 30 chr1 204294998 204297844 -77895820 - L1 LINE L1 -4183 3382 510 2033 166 9 23 chr1 204297844 204298110 -77895554 - MER1B DNA MER1_type -2373 339 78 1983 133 45 48 chr1 204298110 204298486 -77895178 - THE1C LTR MaLR 0 375 1 2033 166 9 23 chr1 204298486 204298563 -77895101 - MER1B DNA MER1_type -2634 78 1 2837 174 46 14 chr1 204298563 204299064 -77894600 - L1 LINE L1 -7048 517 1 * 6733 196 50 37 chr1 204299062 204300017 -77893647 - L1 LINE L1 -1151 4995 4054 1651 184 17 7 chr1 204300017 204300311 -77893353 - AluJb SINE Alu -15 297 1 6733 196 50 37 chr1 204300311 204301222 -77892442 - L1 LINE L1 -2092 4054 3644 2360 93 3 0 chr1 204301222 204301524 -77892140 - AluSg SINE Alu -7 303 1 6733 196 50 37 chr1 204301524 204302102 -77891562 - L1 LINE L1 -2502 3644 3075 3587 128 17 96 chr1 204302204 204302893 -77890771 + LTR8 LTR ERV1 57 691 0 730 232 73 0 chr1 204302919 204303096 -77890568 + MER21B LTR ERV1 614 803 -60 282 203 34 0 chr1 204303798 204303857 -77889807 + L2 LINE L2 3245 3305 -8 3442 90 24 2 chr1 204304550 204305005 -77888659 + MER4C LTR ERV1 1 465 0 671 244 0 8 chr1 204305395 204305526 -77888138 + FLAM_A SINE Alu 1 130 -3 2252 102 0 0 chr1 204305529 204305832 -77887832 + AluSx SINE Alu 1 303 -9 496 209 24 157 chr1 204305848 204306058 -77887606 + MIR SINE MIR 79 260 -2 2192 153 34 3 chr1 204306273 204306600 -77887064 - MER1B DNA MER1_type 0 337 1 26 30 0 0 chr1 204307278 204307311 -77886353 + AT_rich Low_complexity Low_complexity 1 33 0 268 137 21 0 chr1 204308188 204308236 -77885428 + Alu SINE Alu 1 36 -263 1962 130 36 0 chr1 204308275 204308552 -77885112 + AluSg SINE Alu 1 287 -23 260 293 49 0 chr1 204308560 204308642 -77885022 - L2 LINE L2 -33 3280 3195 194 335 99 55 chr1 204308690 204308962 -77884702 + L2 LINE L2 2561 2844 -470 2998 166 60 17 chr1 204309166 204310110 -77883554 + L1M4c LINE L1 1571 2474 -3908 2008 123 97 0 chr1 204310110 204310419 -77883245 + MER44D DNA MER2_type 1 609 0 2998 166 60 17 chr1 204310419 204310433 -77883231 + L1M4c LINE L1 2474 2486 -3896 1897 79 87 4 chr1 204310433 204310687 -77882977 + AluSx SINE Alu 8 282 -30 219 88 0 0 chr1 204310691 204310725 -77882939 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2998 166 60 17 chr1 204310725 204310979 -77882685 + L1M4c LINE L1 2488 2993 -3389 1861 105 98 4 chr1 204310979 204311255 -77882409 - AluSq SINE Alu -11 302 1 239 282 71 0 chr1 204311459 204311544 -77882120 - MER113 DNA MER1_type? -42 479 389 2348 105 0 0 chr1 204311828 204312132 -77881532 + AluSx SINE Alu 1 304 -8 210 186 23 0 chr1 204312146 204312189 -77881475 + GA-rich Low_complexity Low_complexity 1 44 0 276 206 82 0 chr1 204313107 204313180 -77880484 - MIR SINE MIR -6 256 178 756 269 86 86 chr1 204313211 204313621 -77880043 - MLT1K LTR MaLR -30 558 146 2007 113 48 14 chr1 204313621 204313913 -77879751 - AluJb SINE Alu -10 302 1 756 269 86 86 chr1 204313913 204314000 -77879664 - MLT1K LTR MaLR -441 147 61 237 222 159 0 chr1 204314025 204314088 -77879576 - MIR SINE MIR -77 185 113 1985 124 48 26 chr1 204314474 204315021 -77878643 + LTR10E LTR ERV1 1 612 -21 200 356 0 0 chr1 204315237 204315296 -77878368 + MIR SINE MIR 57 115 -147 2164 117 10 0 chr1 204315311 204315619 -77878045 - AluY SINE Alu 0 311 1 780 164 39 0 chr1 204315620 204315748 -77877916 - AluJo/FLAM SINE Alu -169 133 1 258 177 16 0 chr1 204315778 204315840 -77877824 - FLAM SINE Alu 0 133 71 934 200 5 16 chr1 204316882 204317067 -77876597 + FRAM SINE Alu 1 175 -1 407 300 39 56 chr1 204317120 204317300 -77876364 - L2 LINE L2 -426 2888 2712 1858 173 3 10 chr1 204318658 204318970 -77874694 + AluJo SINE Alu 1 310 -2 1475 253 48 37 chr1 204318972 204319510 -77874154 + MLT1H1 LTR MaLR 12 555 0 383 313 27 7 chr1 204319518 204319665 -77873999 - L2 LINE L2 -610 2704 2555 2210 97 0 41 chr1 204320366 204320685 -77872979 - AluSx SINE Alu -6 306 1 192 97 0 0 chr1 204321944 204321975 -77871689 + (TC)n Simple_repeat Simple_repeat 1 31 0 273 314 48 57 chr1 204321980 204322190 -77871474 - L2 LINE L2 -7 3306 3099 217 75 50 0 chr1 204322921 204322961 -77870703 + (TA)n Simple_repeat Simple_repeat 2 43 0 188 45 0 0 chr1 204322964 204322986 -77870678 + (T)n Simple_repeat Simple_repeat 1 22 0 1894 157 3 0 chr1 204324466 204324753 -77868911 - AluSx SINE Alu -16 296 9 1415 133 0 0 chr1 204324761 204324995 -77868669 - L1MC3 LINE L1 -7 7778 7545 2063 80 0 112 chr1 204326246 204326585 -77867079 + AluSx SINE Alu 1 301 -11 23569 23 12 0 chr1 204328032 204331660 -77862004 + L1PA4 LINE L1 2535 6152 -3 294 29 0 0 chr1 204331780 204331815 -77861849 + (CA)n Simple_repeat Simple_repeat 2 36 0 34 42 0 0 chr1 204332053 204332101 -77861563 + AT_rich Low_complexity Low_complexity 1 48 0 753 118 7 22 chr1 204332650 204332786 -77860878 - L1MB2 LINE L1 -2 6169 6036 771 185 74 25 chr1 204332811 204332973 -77860691 + AluSg/x SINE Alu 135 304 -8 2364 64 24 3 chr1 204332973 204333269 -77860395 - AluY SINE Alu -9 302 1 5931 119 45 21 chr1 204333274 204333971 -77859693 - L1MA5A LINE L1 0 6297 5619 2422 72 7 0 chr1 204333971 204334275 -77859389 + AluSc SINE Alu 1 306 -3 5931 119 45 21 chr1 204334275 204334397 -77859267 - L1MA5A LINE L1 -678 5619 5501 195 114 0 0 chr1 204334397 204334432 -77859232 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 5931 119 45 21 chr1 204334432 204334828 -77858836 - L1MA5A LINE L1 -796 5501 5054 189 0 0 0 chr1 204334901 204334922 -77858742 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 201 226 0 38 chr1 204335075 204335128 -77858536 + L2 LINE L2 2190 2240 -1074 780 200 72 31 chr1 204335137 204335332 -77858332 - MER20 DNA MER1_type 0 219 17 2552 64 0 0 chr1 204335408 204335719 -77857945 - AluY SINE Alu 0 311 1 1170 227 131 50 chr1 204336148 204336545 -77857119 + MER21B LTR ERV1 19 447 -416 398 313 104 8 chr1 204336835 204336969 -77856695 + MIR3 SINE MIR 41 187 -21 1222 167 33 9 chr1 204337399 204337614 -77856050 - MIR SINE MIR -13 249 30 360 281 130 20 chr1 204337674 204337820 -77855844 + MIR3 SINE MIR 47 208 0 299 269 259 20 chr1 204338190 204338391 -77855273 + MIR SINE MIR 1 249 -13 526 337 17 17 chr1 204338447 204338622 -77855042 + MIR SINE MIR 19 193 -69 25 0 0 0 chr1 204339690 204339715 -77853949 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 204340117 204340139 -77853525 + GC_rich Low_complexity Low_complexity 1 22 0 208 298 0 0 chr1 204340614 204340661 -77853003 + L2 LINE L2 3259 3305 -8 972 149 65 33 chr1 204340930 204341144 -77852520 - MLT1C LTR MaLR -246 221 1 355 319 102 84 chr1 204342430 204342781 -77850883 - L2 LINE L2 -2 3270 2908 1767 182 7 20 chr1 204342781 204343083 -77850581 + AluJo SINE Alu 1 298 -14 355 319 102 84 chr1 204343083 204343183 -77850481 - L2 LINE L2 -364 2908 2811 1849 189 52 13 chr1 204343202 204343583 -77850081 + MSTD LTR MaLR 1 396 0 2591 224 56 40 chr1 204343585 204344331 -77849333 + MSTD-int LTR MaLR 2 759 -976 228 307 80 13 chr1 204344416 204344491 -77849173 - L2 LINE L2 -33 3239 3160 233 307 44 0 chr1 204344794 204344908 -77848756 - LTR67 LTR ERVL -7 550 432 28 29 0 0 chr1 204346346 204346381 -77847283 + AT_rich Low_complexity Low_complexity 1 35 0 199 362 52 9 chr1 204346413 204346529 -77847135 + MIR3 SINE MIR 79 199 -9 24 32 0 0 chr1 204346597 204346628 -77847036 + AT_rich Low_complexity Low_complexity 1 31 0 409 277 79 0 chr1 204347111 204347212 -77846452 - MIR3 SINE MIR -9 199 91 181 264 99 88 chr1 204347264 204347355 -77846309 + MIR3 SINE MIR 82 173 -35 183 237 0 0 chr1 204347370 204347408 -77846256 + L3 LINE CR1 1538 1575 -2 987 190 39 81 chr1 204348076 204348133 -77845531 + L1ME2 LINE L1 5221 5279 -887 10134 53 11 59 chr1 204348133 204349560 -77844104 + SVA Other Other 25 1383 -3 987 190 39 81 chr1 204349560 204349572 -77844092 + L1ME2 LINE L1 5279 5290 -876 2130 110 40 7 chr1 204349572 204349872 -77843792 + AluSg SINE Alu 1 310 0 987 190 39 81 chr1 204349872 204350163 -77843501 + L1ME2 LINE L1 5290 5570 -596 418 236 51 3 chr1 204350160 204350312 -77843352 + L1ME2 LINE L1 5853 5995 -169 * 843 188 0 0 chr1 204350329 204350494 -77843170 + L1MA10 LINE L1 6169 6333 -1 2418 86 0 16 chr1 204350548 204350862 -77842802 + AluSx SINE Alu 1 309 -3 1405 230 114 24 chr1 204350874 204351337 -77842327 + Charlie7 DNA MER1_type 78 597 -2015 2212 117 0 0 chr1 204351337 204351637 -77842027 - AluSx SINE Alu -12 300 1 1405 230 114 24 chr1 204351637 204351707 -77841957 + Charlie7 DNA MER1_type 597 659 -1953 557 199 97 118 chr1 204351723 204352145 -77841519 + Charlie7 DNA MER1_type 2192 2604 -8 2139 106 32 0 chr1 204352797 204353081 -77840583 + AluSx SINE Alu 1 293 -19 382 156 0 0 chr1 204353479 204353543 -77840121 - Charlie1 DNA MER1_type -1 2760 2697 1040 201 142 31 chr1 204355733 204356126 -77837538 - MLT1C LTR MaLR 0 467 24 1706 193 3 7 chr1 204356177 204356483 -77837181 - AluJo SINE Alu -7 305 1 279 0 0 0 chr1 204356998 204357029 -77836635 + (CA)n Simple_repeat Simple_repeat 1 31 0 13821 189 35 16 chr1 204357029 204357633 -77836031 - L1M1 LINE L1 -523 6482 5891 303 28 0 0 chr1 204357633 204357669 -77835995 + (TG)n Simple_repeat Simple_repeat 1 36 0 13821 189 35 16 chr1 204357669 204358390 -77835274 - L1M1 LINE L1 -1114 5891 5185 396 0 0 0 chr1 204358390 204358434 -77835230 + (TG)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr1 204358433 204358456 -77835208 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 13821 189 35 16 chr1 204358434 204361438 -77832226 - L1M1 LINE L1 -1820 5185 2051 15499 27 0 0 chr1 204361438 204364035 -77829629 - L1PA2 LINE L1 0 6155 3559 5352 21 0 0 chr1 204364035 204364707 -77828957 - L1PA2 LINE L1 -2869 3277 2606 3403 246 62 26 chr1 204364696 204365852 -77827812 - L1M1 LINE L1 -4773 2076 879 * 608 251 89 0 chr1 204366000 204366179 -77827485 - MER3 DNA MER1_type -13 196 2 1686 212 59 91 chr1 204366303 204366470 -77827194 - L1MC5 LINE L1 -531 7430 7259 288 0 0 0 chr1 204366470 204366502 -77827162 + (TA)n Simple_repeat Simple_repeat 2 33 0 1686 212 59 91 chr1 204366502 204367044 -77826620 - L1MC5 LINE L1 -702 7259 6823 180 0 0 0 chr1 204367044 204367064 -77826600 + (T)n Simple_repeat Simple_repeat 1 20 0 1686 212 59 91 chr1 204367064 204367225 -77826439 - L1MC5 LINE L1 -1138 6823 6658 208 336 65 9 chr1 204368120 204368227 -77825437 - L2 LINE L2 -217 3055 2943 323 141 200 0 chr1 204368750 204368835 -77824829 - L1MB5 LINE L1 -17 6157 6056 2089 112 3 30 chr1 204368837 204369142 -77824522 - AluSg SINE Alu -13 297 1 1606 97 22 0 chr1 204369426 204369654 -77824010 - L1PA13 LINE L1 -19 6144 5912 817 121 21 0 chr1 204370580 204370720 -77822944 + L1MB4 LINE L1 6035 6177 -3 2696 133 22 0 chr1 204471215 204471620 -77722044 + LTR26B LTR ERV1 1 414 -117 1743 167 156 90 chr1 204471640 204472094 -77721570 - MLT2B3 LTR ERVL -36 501 1 486 255 106 48 chr1 204472293 204472620 -77721044 + MLT1K LTR MaLR 210 585 -3 1617 176 0 33 chr1 204472885 204473192 -77720472 - AluJo SINE Alu -5 307 11 2029 148 65 34 chr1 204473204 204473589 -77720075 + MSTA LTR MaLR 23 419 -9 1920 216 53 13 chr1 204473589 204474185 -77719479 - L1ME LINE L1 -462 5704 5083 1782 216 19 64 chr1 204474423 204474891 -77718773 + MER31B LTR ERV1 1 447 -19 409 349 42 0 chr1 204474889 204475081 -77718583 - LTR16A LTR ERVL -52 398 199 * 1532 116 0 0 chr1 204475535 204475733 -77717931 + AluSx SINE Alu 1 198 -114 180 0 0 0 chr1 204475759 204475779 -77717885 + (A)n Simple_repeat Simple_repeat 1 20 0 1629 161 30 37 chr1 204475790 204476089 -77717575 + AluJo SINE Alu 1 297 -15 687 137 17 26 chr1 204476345 204476462 -77717202 + FLAM_C SINE Alu 2 117 -26 180 360 58 12 chr1 204476540 204476626 -77717038 - MIR SINE MIR -88 120 31 * 259 338 102 23 chr1 204476615 204476958 -77716706 + L2 LINE L2 2425 2794 -520 2086 114 3 29 chr1 204477194 204477501 -77716163 - AluSx SINE Alu -13 299 1 730 241 123 90 chr1 204477509 204477805 -77715859 - MLT1L LTR MaLR -180 435 121 1987 210 5 25 chr1 204477805 204478209 -77715455 + MSTD LTR MaLR 1 396 0 730 241 123 90 chr1 204478209 204478302 -77715362 - MLT1L LTR MaLR -494 121 33 226 329 69 73 chr1 204478342 204478618 -77715046 + L2 LINE L2 2794 3067 -205 * 240 167 37 0 chr1 204478612 204478666 -77714998 + L2 LINE L2 3254 3309 -4 2276 69 0 56 chr1 204478857 204479177 -77714487 + AluY SINE Alu 1 302 -9 304 77 0 19 chr1 204479299 204479351 -77714313 - Alu SINE Alu 0 301 251 1649 129 107 4 chr1 204479451 204479714 -77713950 - AluSq SINE Alu -23 290 1 230 282 71 0 chr1 204479918 204480003 -77713661 - MER113 DNA MER1_type? -42 479 389 2366 105 0 0 chr1 204480287 204480591 -77713073 + AluSx SINE Alu 1 304 -8 210 186 23 0 chr1 204480605 204480648 -77713016 + GA-rich Low_complexity Low_complexity 1 44 0 255 219 82 0 chr1 204481566 204481639 -77712025 - MIR SINE MIR -6 256 178 772 269 86 86 chr1 204481670 204482080 -77711584 - MLT1K LTR MaLR -30 558 146 2026 113 48 14 chr1 204482080 204482372 -77711292 - AluJb SINE Alu -10 302 1 772 269 86 86 chr1 204482372 204482459 -77711205 - MLT1K LTR MaLR -441 147 61 218 222 159 0 chr1 204482484 204482547 -77711117 - MIR SINE MIR -77 185 113 1933 124 50 26 chr1 204482933 204483479 -77710185 + LTR10E LTR ERV1 1 612 -21 184 356 0 0 chr1 204483695 204483754 -77709910 + MIR SINE MIR 57 115 -147 2181 117 10 0 chr1 204483769 204484077 -77709587 - AluY SINE Alu 0 311 1 732 164 39 0 chr1 204484078 204484206 -77709458 - AluJo/FLAM SINE Alu -169 133 1 259 177 16 0 chr1 204484236 204484298 -77709366 - FLAM_A SINE Alu -1 132 70 917 200 5 16 chr1 204485340 204485525 -77708139 + FRAM SINE Alu 1 175 -1 352 300 39 56 chr1 204485578 204485758 -77707906 - L2 LINE L2 -426 2888 2712 1838 173 3 10 chr1 204487116 204487428 -77706236 + AluJo SINE Alu 1 310 -2 1671 251 48 37 chr1 204487430 204487968 -77705696 + MLT1H1 LTR MaLR 12 555 0 342 313 27 7 chr1 204487976 204488123 -77705541 - L2 LINE L2 -610 2704 2555 2237 97 0 41 chr1 204488824 204489143 -77704521 - AluSx SINE Alu -6 306 1 192 97 0 0 chr1 204490402 204490433 -77703231 + (TC)n Simple_repeat Simple_repeat 1 31 0 284 283 65 11 chr1 204490438 204490530 -77703134 - L2 LINE L2 -7 3265 3169 208 77 51 0 chr1 204491379 204491418 -77702246 + (TA)n Simple_repeat Simple_repeat 1 41 0 2330 73 7 0 chr1 204491418 204491705 -77701959 - AluSq SINE Alu -4 309 21 478 82 0 0 chr1 204491809 204491870 -77701794 + Alu SINE Alu 231 291 -21 383 250 128 26 chr1 204492222 204492378 -77701286 - L1MC4a LINE L1 -1913 5895 5724 189 0 0 0 chr1 204492413 204492434 -77701230 + (TG)n Simple_repeat Simple_repeat 2 22 0 689 215 0 7 chr1 204492594 204492729 -77700935 + MER94 DNA DNA 1 134 0 245 303 92 31 chr1 204494161 204494179 -77699485 + L1ME4a LINE L1 5863 5878 -243 189 0 0 0 chr1 204494179 204494200 -77699464 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 245 303 92 31 chr1 204494200 204494409 -77699255 + L1ME4a LINE L1 5878 6104 -17 21 71 0 0 chr1 204494657 204494699 -77698965 + AT_rich Low_complexity Low_complexity 1 42 0 456 331 24 36 chr1 204494898 204495146 -77698518 + MIR SINE MIR 2 246 -16 227 163 50 0 chr1 204495211 204495291 -77698373 + GA-rich Low_complexity Low_complexity 1 84 0 263 259 35 0 chr1 204495456 204495541 -77698123 + L2 LINE L2 2996 3083 -189 220 312 89 25 chr1 204496393 204496550 -77697114 - L2 LINE L2 -1400 1914 1748 1904 146 3 3 chr1 204497586 204497887 -77695777 - AluSg SINE Alu -8 302 2 198 71 0 0 chr1 204499338 204499366 -77694298 + (GA)n Simple_repeat Simple_repeat 2 29 0 1658 151 8 0 chr1 204499470 204499729 -77693935 + AluJo SINE Alu 37 297 -15 542 179 9 19 chr1 204500031 204500137 -77693527 - MER45 DNA AcHobo 0 1581 1477 248 325 0 10 chr1 204500269 204500438 -77693226 - MIR SINE MIR -24 238 20 225 314 23 12 chr1 204501254 204501340 -77692324 - MIR SINE MIR -60 148 62 669 176 81 7 chr1 204501724 204501872 -77691792 - L1MB7 LINE L1 0 6184 6026 344 130 0 0 chr1 204501872 204501926 -77691738 - MLT2B2 LTR ERVL -1 519 466 2527 186 8 47 chr1 204501971 204502465 -77691199 - MLT2B2 LTR ERVL -40 475 1 2115 141 21 11 chr1 204502466 204502843 -77690821 - L1MB7 LINE L1 -155 6029 5649 315 266 42 14 chr1 204502843 204502986 -77690678 - L1MC/D LINE L1 -1984 5824 5678 284 249 254 0 chr1 204503026 204503191 -77690473 + MIR SINE MIR 56 262 0 21 0 0 0 chr1 204503245 204503266 -77690398 + AT_rich Low_complexity Low_complexity 1 21 0 2291 108 3 0 chr1 204503273 204503569 -77690095 + AluSx SINE Alu 3 299 -13 1272 102 0 0 chr1 204503569 204503735 -77689929 + AluSg/x SINE Alu 132 297 -13 233 256 218 0 chr1 204503743 204503821 -77689843 - L1MC/D LINE L1 -544 5577 5483 816 128 83 15 chr1 204503826 204503959 -77689705 - FRAM SINE Alu -12 164 23 347 220 23 102 chr1 204503977 204504064 -77689600 - L1MC/D LINE L1 -2332 5476 5408 2123 102 10 10 chr1 204504064 204504358 -77689306 - AluY SINE Alu -17 294 1 347 220 23 102 chr1 204504358 204504447 -77689217 - L1MC/D LINE L1 -2400 5408 5314 915 293 8 8 chr1 204504581 204504840 -77688824 - MLT1I LTR MaLR -134 275 17 1647 127 25 79 chr1 204505716 204506031 -77687633 - AluJb SINE Alu -14 298 1 22 0 0 0 chr1 204507897 204507919 -77685745 + AT_rich Low_complexity Low_complexity 1 22 0 2032 111 4 0 chr1 204507966 204508236 -77685428 - AluSq SINE Alu -20 293 23 2168 108 3 20 chr1 204508245 204508551 -77685113 - AluSx SINE Alu -11 301 1 452 311 8 0 chr1 204510880 204511012 -77682652 - L2 LINE L2 -1 3312 3180 22 0 0 0 chr1 204511013 204511035 -77682629 + AT_rich Low_complexity Low_complexity 1 22 0 532 208 89 6 chr1 204511199 204511367 -77682297 + MIR SINE MIR 21 202 -60 215 367 29 0 chr1 204511621 204511760 -77681904 - L2 LINE L2 -715 2599 2457 342 316 114 18 chr1 204511783 204512115 -77681549 - L2 LINE L2 -1797 1517 1154 352 171 0 13 chr1 204512175 204512251 -77681413 - MIR SINE MIR -5 257 183 2091 193 44 20 chr1 204512464 204512920 -77680744 - MLT1C LTR MaLR 0 467 1 241 336 87 29 chr1 204514450 204514557 -77679107 - L2 LINE L2 -242 3030 2931 1737 182 7 20 chr1 204514557 204514859 -77678805 + AluJo SINE Alu 1 298 -14 241 336 87 29 chr1 204514859 204514959 -77678705 - L2 LINE L2 -341 2931 2811 1068 207 33 5 chr1 204514978 204515191 -77678473 + MSTD LTR MaLR 1 219 -177 2147 117 13 0 chr1 204515425 204515724 -77677940 - AluSc SINE Alu -6 303 1 1272 112 151 0 chr1 204515867 204516072 -77677592 - MER1B DNA MER1_type 0 339 104 996 149 0 0 chr1 204516563 204516711 -77676953 - FRAM SINE Alu -28 148 1 1849 114 0 4 chr1 204517317 204517606 -77676058 - AluSx SINE Alu 0 326 39 274 170 21 0 chr1 204517641 204517688 -77675976 - AluSg/x SINE Alu -134 168 121 818 244 62 40 chr1 204517702 204517977 -77675687 - MLT1I LTR MaLR -121 288 8 400 276 57 0 chr1 204518785 204518890 -77674774 + L2 LINE L2 3162 3272 0 2117 168 30 51 chr1 204519160 204519630 -77674034 + MLT1C LTR MaLR 1 460 -7 254 286 0 39 chr1 204519956 204520033 -77673631 + GA-rich Low_complexity Low_complexity 1 74 0 26 0 0 0 chr1 204520718 204520744 -77672920 + AT_rich Low_complexity Low_complexity 1 26 0 360 211 127 21 chr1 204522288 204522430 -77671234 - MIR SINE MIR -27 235 79 2307 103 0 0 chr1 204524116 204524408 -77669256 - AluSx SINE Alu -15 297 6 1199 69 0 0 chr1 204524482 204524657 -77669007 - AluY SINE Alu 0 315 141 219 220 102 0 chr1 204525358 204525417 -77668247 + MIR SINE MIR 81 145 -63 1370 150 85 37 chr1 204525418 204525664 -77668000 + AluJo SINE Alu 1 258 -54 699 139 0 0 chr1 204527123 204527231 -77666433 + MSTD LTR MaLR 289 396 0 2884 223 56 40 chr1 204527233 204527979 -77665685 + MSTD-int LTR MaLR 2 759 -976 200 307 80 13 chr1 204528064 204528139 -77665525 - L2 LINE L2 -33 3239 3160 274 307 44 0 chr1 204528442 204528556 -77665108 - LTR67 LTR ERVL -7 550 432 741 261 35 18 chr1 204528751 204528977 -77664687 - ERVL LTR ERVL -346 5418 5189 * 2048 288 71 40 chr1 204528969 204529815 -77663849 - ERVL LTR ERVL -824 4940 4069 284 316 0 0 chr1 204529865 204529960 -77663704 - LTR67 LTR ERVL -5 552 458 1875 123 33 43 chr1 204530118 204530420 -77663244 - AluSx SINE Alu -13 299 1 234 189 19 0 chr1 204530690 204530743 -77662921 + MIR SINE MIR 101 154 -108 2224 129 3 0 chr1 204531321 204531631 -77662033 - AluSx SINE Alu -1 311 1 238 247 82 0 chr1 204531777 204531862 -77661802 - HAL1b LINE L1 -24 1324 1233 420 315 51 5 chr1 204531934 204532150 -77661514 + L2 LINE L2 1609 1834 -1480 248 212 91 0 chr1 204532155 204532221 -77661443 + L2 LINE L2 2090 2161 -1153 522 167 0 0 chr1 204532223 204532301 -77661363 - AluJ/FLAM SINE Alu -232 80 3 1638 267 44 19 chr1 204532304 204532777 -77660887 + L2 LINE L2 2152 2641 -673 1918 198 16 65 chr1 204532777 204533268 -77660396 + MLT1C LTR MaLR 1 467 0 1638 267 44 19 chr1 204533268 204533314 -77660350 + L2 LINE L2 2641 2684 -630 655 152 0 0 chr1 204533366 204533465 -77660199 + L1M3 LINE L1 5587 5685 -495 480 317 154 18 chr1 204533931 204534432 -77659232 + L2 LINE L2 1870 2438 -876 1029 246 11 15 chr1 204534503 204534763 -77658901 + MIR SINE MIR 2 260 -2 663 293 18 5 chr1 204534855 204535077 -77658587 - MIR SINE MIR -35 227 3 256 263 202 0 chr1 204535261 204535360 -77658304 - L2 LINE L2 -1 3271 3153 2613 124 3 3 chr1 204535453 204535817 -77657847 - THE1B LTR MaLR 0 364 1 2138 120 0 29 chr1 204536076 204536385 -77657279 - AluSx SINE Alu -12 300 1 2192 112 0 0 chr1 204536678 204536963 -77656701 - AluSx SINE Alu -26 286 2 1545 163 27 31 chr1 204537715 204538009 -77655655 + AluJo SINE Alu 1 293 -19 250 247 65 43 chr1 204538009 204538094 -77655570 + MIR SINE MIR 173 262 0 190 298 0 0 chr1 204538475 204538522 -77655142 - L2 LINE L2 -8 3305 3259 22 0 0 0 chr1 204538997 204539019 -77654645 + GC_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 204539727 204539752 -77653912 + GC_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr1 204542030 204542065 -77651599 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 204542281 204542312 -77651352 + AT_rich Low_complexity Low_complexity 1 31 0 372 277 79 0 chr1 204542795 204542896 -77650768 - MIR3 SINE MIR -9 199 91 294 343 105 0 chr1 204543203 204543346 -77650318 - MIR SINE MIR 0 262 105 2045 160 71 24 chr1 204543354 204543847 -77649817 + MER44D DNA MER2_type 1 605 0 2002 206 32 19 chr1 204544174 204544607 -77649057 + MLT1F LTR MaLR 104 542 0 2242 108 0 3 chr1 204545060 204545357 -77648307 - AluSq SINE Alu -17 296 1 704 161 63 46 chr1 204545761 204545935 -77647729 - MER104 DNA MER2_type -3 177 1 2125 87 48 14 chr1 204545973 204546262 -77647402 + AluSq SINE Alu 3 301 -12 313 288 96 23 chr1 204546427 204546604 -77647060 - MIR SINE MIR -2 260 71 1014 171 6 0 chr1 204546966 204547130 -77646534 + FRAM SINE Alu 1 164 -12 748 268 143 59 chr1 204547152 204547726 -77645938 + HAL1 LINE L1 4 625 -1882 2380 70 3 22 chr1 204547988 204548300 -77645364 - AluY SINE Alu -5 306 1 2143 129 0 3 chr1 204548636 204548931 -77644733 + AluSx SINE Alu 1 294 -18 261 280 0 72 chr1 204548950 204549075 -77644589 - MER5A DNA MER1_type -72 117 2 210 171 0 0 chr1 204549204 204549245 -77644419 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 690 222 22 22 chr1 204549318 204549503 -77644161 - MER3 DNA MER1_type -15 194 10 2202 113 0 13 chr1 204549518 204549827 -77643837 - AluSx SINE Alu -7 305 1 1057 144 48 58 chr1 204549960 204550168 -77643496 + MER7C DNA MER2_type 2 207 -395 * 19610 91 18 3 chr1 204550164 204552765 -77640899 + Charlie3 DNA MER1_type 68 2706 -4 450 261 83 17 chr1 204553704 204553884 -77639780 + MIR SINE MIR 10 201 -61 190 153 102 68 chr1 204553878 204553937 -77639727 - L2 LINE L2 -4 3268 3208 * 198 298 0 0 chr1 204553946 204553993 -77639671 + L2 LINE L2 3210 3256 -16 466 225 0 9 chr1 204554008 204554119 -77639545 - MER104 DNA Tc2 -3 177 68 2154 115 0 0 chr1 204554227 204554513 -77639151 - AluSx SINE Alu -26 286 1 1815 149 0 21 chr1 204554519 204554808 -77638856 - AluJb SINE Alu -9 303 21 28 0 0 0 chr1 204554814 204554842 -77638822 + AT_rich Low_complexity Low_complexity 1 28 0 1079 168 31 11 chr1 204554842 204555033 -77638631 - AluJo SINE Alu -31 281 87 300 290 21 0 chr1 204555087 204555180 -77638484 + L1ME4a LINE L1 5524 5618 -503 384 247 130 17 chr1 204555210 204555441 -77638223 + L1ME4a LINE L1 5704 5960 -161 23 33 0 0 chr1 204555685 204555715 -77637949 + AT_rich Low_complexity Low_complexity 1 30 0 193 259 0 0 chr1 204555726 204555780 -77637884 - MIR SINE MIR -13 249 196 180 176 0 0 chr1 204555780 204555814 -77637850 + (TATG)n Simple_repeat Simple_repeat 4 37 0 649 209 151 0 chr1 204555814 204555986 -77637678 - MIR SINE MIR -61 201 4 1787 146 31 3 chr1 204558105 204558393 -77635271 - AluJb SINE Alu -16 296 1 3668 104 34 71 chr1 204558580 204558635 -77635029 - MER4A LTR ERV1 0 600 545 2400 96 0 0 chr1 204558635 204558938 -77634726 + AluSg SINE Alu 3 305 -5 3668 104 34 71 chr1 204558938 204559505 -77634159 - MER4A LTR ERV1 -55 545 1 1634 144 42 19 chr1 204559528 204559791 -77633873 + AluJb SINE Alu 32 300 -12 405 308 8 0 chr1 204560829 204560946 -77632718 + MIR3 SINE MIR 87 204 -4 306 291 103 8 chr1 204561241 204561358 -77632306 + MIR SINE MIR 48 175 -87 933 253 46 41 chr1 204562097 204562465 -77631199 - L2 LINE L2 -2 3311 2942 479 221 209 32 chr1 204562470 204562628 -77631036 + MER5A DNA MER1_type 4 189 0 1656 77 0 0 chr1 204563514 204563709 -77629955 + AluSg/x SINE Alu 84 278 -32 770 90 0 8 chr1 204563709 204563831 -77629833 + (GAAA)n Simple_repeat Simple_repeat 1 121 0 291 243 0 14 chr1 204564858 204564932 -77628732 + MIR SINE MIR 186 258 -4 648 295 42 45 chr1 204565201 204565557 -77628107 + L1MC5 LINE L1 7540 7894 -67 276 179 8 49 chr1 204566635 204566758 -77626906 + GA-rich Low_complexity Low_complexity 3 120 0 23 0 0 0 chr1 204566798 204566821 -77626843 + AT_rich Low_complexity Low_complexity 1 23 0 2389 83 3 0 chr1 204567226 204567528 -77626136 - AluSp SINE Alu -10 303 1 389 315 18 55 chr1 204567533 204567752 -77625912 + MLT1K LTR MaLR 37 247 -341 1860 166 6 10 chr1 204568081 204568394 -77625270 + AluJo SINE Alu 1 312 0 1849 241 93 61 chr1 204568454 204569111 -77624553 + MER21B LTR ERV1 175 852 -11 1859 171 0 16 chr1 204569204 204569520 -77624144 + AluJb SINE Alu 1 311 -1 1234 119 0 0 chr1 204570095 204570263 -77623401 - AluSg/x SINE Alu -11 299 132 2075 121 3 23 chr1 204570263 204570569 -77623095 - AluSx SINE Alu -12 300 1 2313 89 0 0 chr1 204571358 204571649 -77622015 - AluSx SINE Alu -21 291 1 578 216 9 0 chr1 204571801 204571912 -77621752 - MER81 DNA DNA 0 114 3 596 328 15 1 chr1 204572670 204572868 -77620796 + MIR3 SINE MIR 1 203 -5 2098 98 3 63 chr1 204573180 204573498 -77620166 + AluSc SINE Alu 1 299 -10 264 231 15 0 chr1 204574330 204574395 -77619269 - L1MC5 LINE L1 -68 7893 7828 431 240 56 46 chr1 204574411 204574607 -77619057 - MER97c DNA MER1_type? -18 1072 875 198 0 0 0 chr1 204574752 204574774 -77618890 + (TA)n Simple_repeat Simple_repeat 2 23 0 1958 155 7 0 chr1 204574774 204575078 -77618586 - AluJb SINE Alu -6 306 1 1431 179 31 34 chr1 204575082 204575467 -77618197 - MER97b DNA MER1_type? -260 793 410 448 195 0 12 chr1 204575495 204575577 -77618087 - MER97b DNA MER1_type? -972 81 1 2039 129 3 0 chr1 204576707 204577044 -77616620 - AluSx SINE Alu 0 338 1 436 352 13 13 chr1 204577211 204577441 -77616223 + HERV16 LTR ERVL 1770 1999 -3765 1321 228 93 30 chr1 204577441 204577880 -77615784 + MLT1C LTR MaLR 1 467 0 1776 305 26 9 chr1 204577925 204578717 -77614947 + HERV16 LTR ERVL 2019 2839 -2646 1547 302 109 7 chr1 204578725 204579340 -77614324 + HERV16 LTR ERVL 2981 3658 -1996 452 230 30 15 chr1 204579488 204579623 -77614041 + HERV16 LTR ERVL 3862 3998 -1487 455 235 31 0 chr1 204579724 204579822 -77613842 + HERV16 LTR ERVL 4194 4294 -1470 1277 341 31 9 chr1 204579915 204580557 -77613107 + HERV16 LTR ERVL 2944 3599 -2165 269 239 108 68 chr1 204580653 204580904 -77612760 + HERV16 LTR ERVL 3433 3693 -1303 364 224 24 0 chr1 204580914 204580999 -77612665 - MER96 DNA MER1_type? -88 87 1 290 264 143 0 chr1 204581006 204581097 -77612567 - MLT1G LTR MaLR -460 130 27 2101 127 3 3 chr1 204581441 204581740 -77611924 + AluSx SINE Alu 1 299 -13 1821 158 20 13 chr1 204581850 204582148 -77611516 - AluJo SINE Alu -12 300 1 2689 66 8 36 chr1 204582231 204582596 -77611068 + THE1A LTR MaLR 1 355 0 3542 71 12 2 chr1 204582596 204583088 -77610576 + THE1A-int LTR MaLR 1 497 -1083 2448 80 0 0 chr1 204583088 204583387 -77610277 + AluSg SINE Alu 1 299 -11 701 226 109 0 chr1 204583428 204583635 -77610029 - MIR SINE MIR 0 262 35 33 0 0 0 chr1 204585163 204585196 -77608468 + AT_rich Low_complexity Low_complexity 1 33 0 2162 131 0 0 chr1 204585203 204585501 -77608163 + AluSq SINE Alu 1 298 -15 3339 150 92 5 chr1 204586836 204587490 -77606174 - MER50 LTR ERV1 -23 711 1 434 198 38 19 chr1 204587489 204587595 -77606069 + MER94 DNA DNA 2 109 -25 * 738 144 92 6 chr1 204587707 204587881 -77605783 - MER53 DNA DNA 0 189 1 653 221 58 23 chr1 204588231 204588403 -77605261 + MER5B DNA MER1_type 1 178 0 407 293 0 0 chr1 204589160 204589242 -77604422 - L2 LINE L2 -18 3254 3173 281 29 0 0 chr1 204589369 204589404 -77604260 - U2 snRNA snRNA -153 35 1 412 342 7 20 chr1 204590411 204590560 -77603104 + MIR SINE MIR 8 154 -108 368 285 50 30 chr1 204590794 204590994 -77602670 - MARNA DNA Mariner -376 210 7 4066 203 193 31 chr1 204592206 204592626 -77601038 + L1MC4 LINE L1 6459 6810 -1232 1574 242 106 15 chr1 204592626 204593089 -77600575 + MLT1D LTR MaLR 1 505 0 4066 203 193 31 chr1 204593089 204593251 -77600413 + L1MC4 LINE L1 6810 6944 -1098 2018 163 0 3 chr1 204593251 204593564 -77600100 + AluJb SINE Alu 1 312 0 4066 203 193 31 chr1 204593564 204594343 -77599321 + L1MC4 LINE L1 6944 8042 0 365 215 103 0 chr1 204594426 204594533 -77599131 + MIR SINE MIR 20 137 -125 644 202 17 45 chr1 204594634 204594812 -77598852 + L1MB8 LINE L1 5999 6171 -7 450 236 6 112 chr1 204595614 204595775 -77597889 - MLT1J LTR MaLR -359 152 9 579 322 93 73 chr1 204595782 204596777 -77596887 + L2 LINE L2 2243 3272 0 2095 134 3 0 chr1 204597093 204597391 -77596273 + AluSq SINE Alu 3 301 -12 1321 161 96 20 chr1 204597396 204597645 -77596019 + AluJo SINE Alu 1 268 -44 1534 174 70 24 chr1 204598471 204598909 -77594755 - AluJo SINE Alu 0 452 1 281 339 65 8 chr1 204598920 204599044 -77594620 - L2 LINE L2 0 3272 3142 363 23 0 0 chr1 204599049 204599093 -77594571 + (CA)n Simple_repeat Simple_repeat 2 45 0 7231 168 28 6 chr1 204599782 204601993 -77591671 + L1PA14 LINE L1 3888 6161 0 31 26 0 0 chr1 204602415 204602453 -77591211 + AT_rich Low_complexity Low_complexity 1 38 0 524 265 8 0 chr1 204602606 204602723 -77590941 + MIR SINE MIR 106 223 -39 663 222 16 0 chr1 204602945 204603071 -77590593 - FLAM_A SINE Alu -5 128 1 1496 155 9 116 chr1 204603157 204603493 -77590171 + AluJo SINE Alu 1 300 -2 414 218 68 0 chr1 204603578 204603711 -77589953 - L1MC/D LINE L1 -1985 5823 5682 269 215 114 18 chr1 204604274 204604482 -77589182 - L1MC/D LINE L1 -607 5557 5324 1804 163 17 13 chr1 204606945 204607245 -77586419 + AluJb SINE Alu 1 301 -11 2712 74 14 0 chr1 204607272 204607622 -77586042 - THE1A LTR MaLR 0 355 1 2772 10 0 0 chr1 204608992 204609292 -77584372 + AluYa5 SINE Alu 1 300 -11 219 219 0 0 chr1 204609633 204609674 -77583990 + (CA)n Simple_repeat Simple_repeat 2 42 0 382 295 108 7 chr1 204610349 204610488 -77583176 + MIR SINE MIR 46 198 -64 315 194 36 137 chr1 204610790 204610929 -77582735 - L1ME3A LINE L1 -14 6156 6032 389 231 34 41 chr1 204610965 204610980 -77582684 - L1MA9 LINE L1 0 6312 6298 705 231 35 35 chr1 204610980 204611209 -77582455 - L1ME1 LINE L1 -10 6156 5928 1703 188 7 3 chr1 204611209 204611502 -77582162 - AluJo SINE Alu -8 304 11 632 178 96 0 chr1 204611503 204611649 -77582015 - L1ME1 LINE L1 -320 5844 5685 840 71 94 0 chr1 204612088 204612215 -77581449 + MER85 DNA T2_type 1 139 0 24 0 0 0 chr1 204612216 204612240 -77581424 + AT_rich Low_complexity Low_complexity 1 24 0 2369 86 3 13 chr1 204612371 204612686 -77580978 + AluSx SINE Alu 1 312 0 593 174 0 0 chr1 204612834 204612932 -77580732 - Tigger7 DNA MER2_type -8 2479 2382 795 172 134 16 chr1 204612943 204613129 -77580535 - Tigger7 DNA MER2_type -524 209 2 791 169 0 15 chr1 204613688 204613818 -77579846 + FLAM_A SINE Alu 1 128 -5 29 47 0 0 chr1 204614017 204614060 -77579604 + AT_rich Low_complexity Low_complexity 1 43 0 2351 88 3 0 chr1 204614319 204614615 -77579049 - AluSx SINE Alu -15 297 1 537 188 112 24 chr1 204614869 204615039 -77578625 + MER106A DNA MER1_type 29 213 -23 22 70 0 0 chr1 204615427 204615470 -77578194 + AT_rich Low_complexity Low_complexity 1 43 0 2058 145 3 0 chr1 204615473 204615770 -77577894 + AluSx SINE Alu 1 298 -14 1764 161 31 31 chr1 204616599 204616772 -77576892 - AluSx SINE Alu -5 307 132 2381 70 0 35 chr1 204616772 204617088 -77576576 - AluY SINE Alu -6 305 1 1764 161 31 31 chr1 204617088 204617206 -77576458 - AluSx SINE Alu -179 133 16 233 255 0 0 chr1 204617769 204617816 -77575848 + L2 LINE L2 3210 3256 -16 625 249 11 11 chr1 204617831 204618008 -77575656 - MER104 DNA MER2_type -3 177 1 525 228 205 58 chr1 204618586 204618810 -77574854 + MIR SINE MIR 6 262 0 24 0 0 0 chr1 204618826 204618850 -77574814 + AT_rich Low_complexity Low_complexity 1 24 0 398 313 104 8 chr1 204619420 204619554 -77574110 + MIR3 SINE MIR 41 187 -21 1222 167 33 9 chr1 204619984 204620199 -77573465 - MIR SINE MIR -13 249 30 360 281 130 20 chr1 204620259 204620405 -77573259 + MIR3 SINE MIR 47 208 0 299 269 259 20 chr1 204620775 204620976 -77572688 + MIR SINE MIR 1 249 -13 659 304 66 18 chr1 204621032 204621259 -77572405 + MIR SINE MIR 19 256 -6 382 156 0 0 chr1 204621507 204621571 -77572093 + Charlie1 DNA MER1_type 2697 2760 -1 2139 106 32 0 chr1 204621969 204622253 -77571411 - AluSx SINE Alu -19 293 1 535 201 97 121 chr1 204622905 204623328 -77570336 - Charlie7 DNA MER1_type -8 2604 2192 1387 222 119 32 chr1 204623344 204623414 -77570250 - Charlie7 DNA MER1_type -1953 659 597 2212 117 0 0 chr1 204623414 204623714 -77569950 + AluSx SINE Alu 1 300 -12 1387 222 119 32 chr1 204623714 204624148 -77569516 - Charlie7 DNA MER1_type -2015 597 111 796 181 65 0 chr1 204624351 204624489 -77569175 - AluSg/x SINE Alu -29 283 137 623 269 13 53 chr1 204624494 204624637 -77569027 - MIR SINE MIR -44 218 86 1817 164 3 23 chr1 204624637 204624936 -77568728 + AluJo SINE Alu 1 293 -19 623 269 13 53 chr1 204624936 204625019 -77568645 - MIR SINE MIR -176 86 1 2777 169 95 118 chr1 204625296 204625397 -77568267 - L1MC4 LINE L1 -42 8000 7898 212 0 36 0 chr1 204625397 204625425 -77568239 + (CA)n Simple_repeat Simple_repeat 2 30 0 2777 169 95 118 chr1 204625425 204625525 -77568139 - L1MC4 LINE L1 -144 7898 7797 3857 159 30 40 chr1 204625525 204626266 -77567398 - MER44D DNA MER2_type 0 605 1 2777 169 95 118 chr1 204626266 204627030 -77566634 - L1MC4 LINE L1 -245 7797 7059 1246 232 61 61 chr1 204627030 204627491 -77566173 - LTR40c LTR ERVL -4 461 1 2777 169 95 118 chr1 204627491 204627608 -77566056 - L1MC4 LINE L1 -983 7059 6941 564 205 205 6 chr1 204627608 204627774 -77565890 - L1MC4 LINE L1 -971 7071 6873 1470 229 67 29 chr1 204627775 204628224 -77565440 - MLT1C LTR MaLR -1 466 1 861 173 47 79 chr1 204628224 204628428 -77565236 - L1MC4 LINE L1 -1165 6877 6679 2284 69 3 39 chr1 204628428 204628734 -77564930 - AluSg SINE Alu -15 295 1 250 264 0 28 chr1 204628748 204628820 -77564844 + (CATA)n Simple_repeat Simple_repeat 3 72 0 1172 188 28 3 chr1 204628841 204629145 -77564519 - L1MC4a LINE L1 -1190 6618 6370 321 200 0 0 chr1 204629171 204629236 -77564428 - L1ME2 LINE L1 -14 6150 6086 1148 271 66 59 chr1 204629945 204630484 -77563180 - L2 LINE L2 -2 3311 2763 32 0 0 0 chr1 204631355 204631387 -77562277 + AT_rich Low_complexity Low_complexity 1 32 0 425 229 87 104 chr1 204632273 204632466 -77561198 - MER102b DNA MER1_type -1096 332 142 2158 126 7 0 chr1 204632466 204632768 -77560896 - AluSx SINE Alu -8 304 1 425 229 87 104 chr1 204632768 204632805 -77560859 - MER102b DNA MER1_type -1286 142 106 631 338 81 52 chr1 204632905 204633500 -77560164 + L2 LINE L2 2292 2903 -411 1809 140 7 3 chr1 204633507 204633792 -77559872 - AluJb SINE Alu -8 304 19 414 147 0 15 chr1 204633806 204633897 -77559767 - L1MA4A LINE L1 -3 6274 6068 2341 137 12 7 chr1 204633899 204634321 -77559343 - L1MA4A LINE L1 -186 6117 5694 1782 159 7 23 chr1 204634370 204634672 -77558992 - AluJo SINE Alu -15 297 1 295 250 6 58 chr1 204634899 204635055 -77558609 + GA-rich Low_complexity Low_complexity 3 150 0 208 185 15 15 chr1 204635239 204635304 -77558360 + GA-rich Low_complexity Low_complexity 5 69 0 225 154 0 0 chr1 204635308 204635347 -77558317 + CT-rich Low_complexity Low_complexity 2 40 0 1774 147 0 0 chr1 204635355 204635621 -77558043 - AluJo SINE Alu -46 266 1 2416 164 19 0 chr1 204635985 204636413 -77557251 - MER101 LTR ERV1 -38 436 1 1795 68 128 19 chr1 204636662 204636927 -77556737 + AluSc SINE Alu 1 294 -15 1748 160 3 26 chr1 204636986 204637213 -77556451 + AluSx SINE Alu 1 221 -91 3763 134 33 20 chr1 204637213 204637849 -77555815 + LTR9B LTR ERV1 1 644 0 1748 160 3 26 chr1 204637849 204637927 -77555737 + AluSx SINE Alu 221 299 -13 881 269 101 37 chr1 204637947 204638322 -77555342 - L2 LINE L2 -61 3252 2854 193 313 62 0 chr1 204638323 204638403 -77555261 + L2 LINE L2 3229 3313 0 5056 159 19 4 chr1 204638436 204639969 -77553695 + L1PB3 LINE L1 4601 6152 -2 3960 141 106 33 chr1 204640092 204640858 -77552806 - LTR12 LTR ERV1 0 826 5 1870 197 37 33 chr1 204640874 204641474 -77552190 - pTR5 LTR ERV1 -1094 1344 743 2018 207 120 0 chr1 204641581 204642099 -77551565 + MER99 DNA DNA 203 782 -46 800 111 69 0 chr1 204642154 204642298 -77551366 - Tigger2 DNA MER2_type -113 2605 2452 3792 133 51 21 chr1 204642371 204642865 -77550799 - Tigger2 DNA MER2_type -1972 746 222 2169 86 43 0 chr1 204642865 204643145 -77550519 + AluSq SINE Alu 1 292 -21 3792 133 51 21 chr1 204643145 204643374 -77550290 - Tigger2 DNA MER2_type -2496 222 1 1229 182 12 4 chr1 204643500 204643747 -77549917 - MER90 LTR ERV1 0 614 366 1611 166 9 31 chr1 204643790 204644023 -77549641 - MER50 LTR ERV1 -25 709 483 1497 126 157 8 chr1 204644023 204644155 -77549509 - AluSx SINE Alu -2 300 189 295 23 45 0 chr1 204644155 204644199 -77549465 + (TTTTG)n Simple_repeat Simple_repeat 5 50 0 1497 126 157 8 chr1 204644199 204644327 -77549337 - AluSx SINE Alu -113 189 1 1611 166 9 31 chr1 204644327 204644413 -77549251 - MER50 LTR ERV1 -251 483 397 1555 85 20 20 chr1 204644407 204644655 -77549009 - MER50 LTR ERV1 -486 248 1 * 882 248 68 6 chr1 204644666 204644977 -77548687 - MER90 LTR ERV1 -243 332 3 2293 204 86 17 chr1 204645014 204645608 -77548056 - L1ME3A LINE L1 -23 6147 5513 350 272 69 14 chr1 204645625 204645842 -77547822 + L1M4 LINE L1 3589 3817 -2329 480 205 126 0 chr1 204646166 204646293 -77547371 + MIR SINE MIR 59 201 -61 22 70 0 0 chr1 204647267 204647310 -77546354 + GC_rich Low_complexity Low_complexity 1 43 0 1742 59 129 19 chr1 204648289 204648566 -77545098 + AluSp SINE Alu 1 305 0 317 289 145 7 chr1 204648671 204648823 -77544841 - MIR3 SINE MIR -5 203 31 190 225 0 0 chr1 204648932 204648972 -77544692 - L2 LINE L2 -11 3302 3263 710 142 71 31 chr1 204649061 204649188 -77544476 - FLAM_C SINE Alu 0 133 2 2280 99 0 3 chr1 204649194 204649496 -77544168 - AluSq SINE Alu -12 301 1 743 189 5 70 chr1 204649755 204649940 -77543724 - FRAM SINE Alu -3 173 1 2005 108 27 34 chr1 204651035 204651330 -77542334 - AluSx SINE Alu -14 298 6 5546 169 38 5 chr1 204651340 204652452 -77541212 + Charlie1 DNA MER1_type 1613 2761 0 256 338 126 39 chr1 204652869 204653100 -77540564 + MIR SINE MIR 1 251 -11 191 310 166 43 chr1 204653266 204653453 -77540211 - L2 LINE L2 -263 3050 2841 208 256 47 23 chr1 204655478 204655564 -77538100 + MER5C DNA MER1_type 1 88 -236 632 233 137 98 chr1 204656036 204656466 -77537198 + L1MC4 LINE L1 7336 7782 -260 1339 119 5 0 chr1 204656837 204657022 -77536642 - AluSg/x SINE Alu 0 310 125 24 53 0 0 chr1 204657552 204657590 -77536074 + AT_rich Low_complexity Low_complexity 1 38 0 246 315 93 9 chr1 204657865 204657973 -77535691 - MIR3 SINE MIR -52 156 40 963 206 0 0 chr1 204658064 204658229 -77535435 - FRAM SINE Alu -1 165 1 427 268 77 25 chr1 204659776 204660011 -77533653 - L1MC4 LINE L1 -15 8027 7781 322 256 0 0 chr1 204660094 204660172 -77533492 - AluSp/q SINE Alu -22 281 204 14307 149 40 30 chr1 204660343 204661874 -77531790 + L1M1 LINE L1 1833 3347 -4377 2171 125 0 16 chr1 204661874 204662187 -77531477 - AluSx SINE Alu -4 308 1 14307 149 40 30 chr1 204662187 204662255 -77531409 + L1M1 LINE L1 3347 3413 -4311 387 0 0 0 chr1 204662255 204662298 -77531366 + (CA)n Simple_repeat Simple_repeat 1 43 0 14307 149 40 30 chr1 204662298 204663958 -77529706 + L1M1 LINE L1 3413 5055 -2669 1647 96 0 14 chr1 204663958 204664178 -77529486 + AluSg SINE Alu 1 217 -93 14307 149 40 30 chr1 204664178 204664393 -77529271 + L1M1 LINE L1 5055 5266 -2458 2207 59 0 21 chr1 204664393 204664710 -77528954 + AluY SINE Alu 1 311 0 14307 149 40 30 chr1 204664710 204666417 -77527247 + L1M1 LINE L1 5266 7069 -655 230 213 0 0 chr1 204716434 204716481 -77477183 - L1MC/D LINE L1 -2038 5770 5724 189 0 0 0 chr1 204716516 204716537 -77477127 + (TG)n Simple_repeat Simple_repeat 2 22 0 689 215 0 7 chr1 204716697 204716832 -77476832 + MER94 DNA DNA 1 134 0 245 303 92 31 chr1 204718264 204718282 -77475382 + L1ME4a LINE L1 5863 5878 -243 189 0 0 0 chr1 204718282 204718303 -77475361 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 245 303 92 31 chr1 204718303 204718512 -77475152 + L1ME4a LINE L1 5878 6104 -17 21 71 0 0 chr1 204718760 204718802 -77474862 + AT_rich Low_complexity Low_complexity 1 42 0 456 331 24 36 chr1 204719001 204719249 -77474415 + MIR SINE MIR 2 246 -16 227 163 50 0 chr1 204719314 204719394 -77474270 + GA-rich Low_complexity Low_complexity 1 84 0 263 259 35 0 chr1 204719559 204719644 -77474020 + L2 LINE L2 2996 3083 -189 220 312 89 25 chr1 204720496 204720653 -77473011 - L2 LINE L2 -1400 1914 1748 1904 146 3 3 chr1 204721689 204721990 -77471674 - AluSg SINE Alu -8 302 2 198 71 0 0 chr1 204723441 204723469 -77470195 + (GA)n Simple_repeat Simple_repeat 2 29 0 1658 151 8 0 chr1 204723573 204723832 -77469832 + AluJo SINE Alu 37 297 -15 506 190 10 0 chr1 204724134 204724234 -77469430 - MER45 DNA AcHobo 0 1581 1481 249 319 302 6 chr1 204724372 204724541 -77469123 - MIR SINE MIR -24 238 20 256 314 23 12 chr1 204725357 204725443 -77468221 - MIR SINE MIR -60 148 62 630 187 14 7 chr1 204725836 204725975 -77467689 - L1MB7 LINE L1 -19 6165 6026 321 130 0 0 chr1 204725975 204726029 -77467635 - MLT2B2 LTR ERVL -1 519 466 2323 186 8 47 chr1 204726074 204726568 -77467096 - MLT2B2 LTR ERVL -40 475 1 1951 141 21 11 chr1 204726569 204726946 -77466718 - L1MB7 LINE L1 -155 6029 5649 281 266 42 14 chr1 204726946 204727089 -77466575 - L1MC/D LINE L1 -1984 5824 5678 345 249 254 0 chr1 204727129 204727294 -77466370 + MIR SINE MIR 56 262 0 21 0 0 0 chr1 204727348 204727369 -77466295 + AT_rich Low_complexity Low_complexity 1 21 0 2289 108 3 0 chr1 204727376 204727672 -77465992 + AluSx SINE Alu 3 299 -13 1252 102 0 0 chr1 204727672 204727838 -77465826 + AluSg/x SINE Alu 132 297 -13 822 128 83 15 chr1 204727929 204728062 -77465602 - FRAM SINE Alu -12 164 23 299 220 23 102 chr1 204728080 204728167 -77465497 - L1MB7 LINE L1 -2332 5476 5408 2113 99 10 10 chr1 204728167 204728461 -77465203 - AluY SINE Alu -17 294 1 299 220 23 102 chr1 204728461 204728550 -77465114 - L1MB7 LINE L1 -2400 5408 5314 825 293 8 8 chr1 204728684 204728943 -77464721 - MLT1I LTR MaLR -134 275 17 1632 127 25 79 chr1 204729819 204730134 -77463530 - AluJb SINE Alu -14 298 1 22 0 0 0 chr1 204732000 204732022 -77461642 + AT_rich Low_complexity Low_complexity 1 22 0 2020 111 4 0 chr1 204732069 204732339 -77461325 - AluSq SINE Alu -20 293 23 2243 108 0 16 chr1 204732348 204732654 -77461010 - AluSx SINE Alu -11 301 1 197 374 139 0 chr1 204732811 204732926 -77460738 + L2 LINE L2 3139 3269 -3 205 350 0 0 chr1 204734709 204734769 -77458895 - L2 LINE L2 -12 3260 3201 495 311 8 0 chr1 204734806 204734938 -77458726 - L2 LINE L2 -1 3312 3180 22 0 0 0 chr1 204734939 204734961 -77458703 + AT_rich Low_complexity Low_complexity 1 22 0 594 208 89 6 chr1 204735125 204735293 -77458371 + MIR SINE MIR 21 202 -60 261 352 28 50 chr1 204735504 204735686 -77457978 - L2 LINE L2 -680 2634 2457 428 311 115 28 chr1 204735709 204736066 -77457598 - L2 LINE L2 -1797 1517 1130 381 171 0 13 chr1 204736101 204736177 -77457487 - MIR SINE MIR -5 257 183 1998 193 44 20 chr1 204736390 204736846 -77456818 - MLT1C LTR MaLR 0 467 1 355 319 102 84 chr1 204738132 204738483 -77455181 - L2 LINE L2 -2 3270 2908 1767 182 7 20 chr1 204738483 204738785 -77454879 + AluJo SINE Alu 1 298 -14 355 319 102 84 chr1 204738785 204738885 -77454779 - L2 LINE L2 -364 2908 2811 1849 189 52 13 chr1 204738904 204739285 -77454379 + MSTD LTR MaLR 1 396 0 2591 224 56 40 chr1 204739287 204740033 -77453631 + MSTD-int LTR MaLR 2 759 -976 228 307 80 13 chr1 204740118 204740193 -77453471 - L2 LINE L2 -33 3239 3160 233 307 44 0 chr1 204740496 204740610 -77453054 - LTR67 LTR ERVL -7 550 432 653 261 35 18 chr1 204740805 204741031 -77452633 - ERVL LTR ERVL -346 5418 5189 * 1780 288 71 40 chr1 204741023 204741869 -77451795 - ERVL LTR ERVL -824 4940 4069 258 315 0 0 chr1 204741919 204742011 -77451653 - LTR67 LTR ERVL -5 552 461 1859 123 33 43 chr1 204742172 204742474 -77451190 - AluSx SINE Alu -13 299 1 251 189 19 0 chr1 204742744 204742797 -77450867 + MIR SINE MIR 101 154 -108 194 369 115 0 chr1 204742964 204743094 -77450570 + L2 LINE L2 1117 1261 -2053 2217 129 3 0 chr1 204743375 204743685 -77449979 - AluSx SINE Alu -1 311 1 500 315 51 5 chr1 204743988 204744204 -77449460 + L2 LINE L2 1609 1834 -1480 269 212 91 0 chr1 204744209 204744275 -77449389 + L2 LINE L2 2090 2161 -1153 528 167 0 0 chr1 204744277 204744355 -77449309 - AluJ/FLAM SINE Alu -232 80 3 1806 267 44 19 chr1 204744358 204744831 -77448833 + L2 LINE L2 2152 2641 -673 1853 198 16 65 chr1 204744831 204745322 -77448342 + MLT1C LTR MaLR 1 467 0 1806 267 44 19 chr1 204745322 204745368 -77448296 + L2 LINE L2 2641 2684 -630 605 152 0 0 chr1 204745420 204745519 -77448145 + L1M3 LINE L1 5587 5685 -495 614 310 158 22 chr1 204745962 204746514 -77447150 + L2 LINE L2 1848 2474 -840 1123 242 11 15 chr1 204746557 204746817 -77446847 + MIR SINE MIR 2 260 -2 738 293 18 5 chr1 204746909 204747131 -77446533 - MIR SINE MIR -35 227 3 251 286 184 39 chr1 204747315 204747507 -77446157 - L2 LINE L2 -1 3271 3038 2571 124 3 3 chr1 204747507 204747871 -77445793 - THE1B LTR MaLR 0 364 1 251 286 184 39 chr1 204747871 204747912 -77445752 - L2 LINE L2 -234 3038 3004 2130 120 0 29 chr1 204748130 204748439 -77445225 - AluSx SINE Alu -12 300 1 2163 112 0 0 chr1 204748732 204749017 -77444647 - AluSx SINE Alu -26 286 2 1556 170 27 31 chr1 204749769 204750063 -77443601 + AluJo SINE Alu 1 293 -19 279 247 65 43 chr1 204750063 204750148 -77443516 + MIR SINE MIR 173 262 0 208 298 0 0 chr1 204750529 204750576 -77443088 - L2 LINE L2 -8 3305 3259 22 0 0 0 chr1 204751051 204751073 -77442591 + GC_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 204751475 204751500 -77442164 + GC_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr1 204753778 204753813 -77439851 + AT_rich Low_complexity Low_complexity 1 35 0 199 362 52 9 chr1 204753845 204753961 -77439703 + MIR3 SINE MIR 79 199 -9 24 32 0 0 chr1 204754029 204754060 -77439604 + AT_rich Low_complexity Low_complexity 1 31 0 409 277 79 0 chr1 204754543 204754644 -77439020 - MIR3 SINE MIR -9 199 91 181 264 99 88 chr1 204754696 204754787 -77438877 + MIR3 SINE MIR 82 173 -35 183 237 0 0 chr1 204754802 204754840 -77438824 + L3 LINE CR1 1538 1575 -2 2411 91 0 7 chr1 204755723 204756031 -77437633 + AluSc SINE Alu 1 306 -3 1443 230 112 24 chr1 204756043 204756507 -77437157 + Charlie7 DNA MER1_type 78 597 -2015 2212 117 0 0 chr1 204756507 204756807 -77436857 - AluSx SINE Alu -12 300 1 1443 230 112 24 chr1 204756807 204756877 -77436787 + Charlie7 DNA MER1_type 597 659 -1953 532 199 97 121 chr1 204756893 204757316 -77436348 + Charlie7 DNA MER1_type 2192 2604 -8 2139 106 32 0 chr1 204757968 204758252 -77435412 + AluSx SINE Alu 1 293 -19 382 156 0 0 chr1 204758650 204758714 -77434950 - Charlie1 DNA MER1_type -1 2760 2697 659 304 66 18 chr1 204758962 204759189 -77434475 - MIR SINE MIR -6 256 19 299 269 259 20 chr1 204759245 204759446 -77434218 - MIR SINE MIR -13 249 1 360 281 130 20 chr1 204759816 204759962 -77433702 - MIR3 SINE MIR 0 208 47 1222 167 33 9 chr1 204760022 204760237 -77433427 + MIR SINE MIR 30 249 -13 398 313 104 8 chr1 204760667 204760801 -77432863 - MIR3 SINE MIR -21 187 41 24 0 0 0 chr1 204761371 204761395 -77432269 + AT_rich Low_complexity Low_complexity 1 24 0 525 228 205 58 chr1 204761411 204761635 -77432029 - MIR SINE MIR 0 262 6 757 216 11 6 chr1 204762213 204762389 -77431275 + MER104 DNA MER2_type 1 177 -3 193 250 0 23 chr1 204762393 204762437 -77431227 - MIR SINE MIR 0 262 220 * 216 298 0 0 chr1 204762404 204762451 -77431213 - L2 LINE L2 -16 3256 3210 214 153 102 68 chr1 204762460 204762519 -77431145 + L2 LINE L2 3208 3268 -4 * 524 261 83 17 chr1 204762513 204762693 -77430971 - MIR SINE MIR -61 201 10 209 261 174 11 chr1 204763523 204763615 -77430049 + MIR SINE MIR 107 213 -49 18269 91 18 3 chr1 204763632 204766233 -77427431 - Charlie3 DNA MER1_type -4 2706 68 978 141 48 58 chr1 204766231 204766437 -77427227 - MER7C DNA MER2_type -397 205 2 * 2194 113 0 13 chr1 204766570 204766879 -77426785 + AluSx SINE Alu 1 305 -7 626 222 22 22 chr1 204766894 204767079 -77426585 + MER3 DNA MER1_type 10 194 -15 210 171 0 0 chr1 204767152 204767193 -77426471 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 317 287 0 77 chr1 204767322 204767465 -77426199 + MER5A DNA MER1_type 2 133 -56 2124 129 0 3 chr1 204767466 204767761 -77425903 - AluSx SINE Alu -18 294 1 2374 70 3 22 chr1 204768097 204768412 -77425252 + AluY SINE Alu 1 309 -2 567 270 141 58 chr1 204768594 204769168 -77424496 - HAL1 LINE L1 -1882 625 4 1020 171 6 0 chr1 204769190 204769354 -77424310 - FRAM SINE Alu -12 164 1 378 288 96 23 chr1 204769716 204769893 -77423771 + MIR SINE MIR 71 260 -2 2097 87 48 14 chr1 204770058 204770347 -77423317 - AluSq SINE Alu -12 301 3 668 172 58 40 chr1 204770385 204770559 -77423105 + MER104 DNA MER2_type 1 177 -3 2225 108 0 3 chr1 204770963 204771260 -77422404 + AluSq SINE Alu 1 296 -17 1838 206 32 19 chr1 204771713 204772146 -77421518 - MLT1F LTR MaLR 0 542 104 1897 160 71 24 chr1 204772473 204772966 -77420698 - MER44D DNA MER2_type 0 605 1 343 343 105 0 chr1 204772974 204773117 -77420547 + MIR SINE MIR 105 262 0 261 335 75 12 chr1 204773172 204773333 -77420331 + L2 LINE L2 1836 2006 -1308 3864 148 64 54 chr1 204773353 204774345 -77419319 - L1MB3 LINE L1 -7 6176 5178 1052 174 0 0 chr1 204774354 204774521 -77419143 - AluJb SINE Alu -12 300 134 619 206 88 21 chr1 204774522 204774716 -77418948 - L1MB3 LINE L1 -960 5186 4980 2986 128 40 0 chr1 204774772 204775273 -77418391 - L1MA3 LINE L1 0 7724 7204 237 86 52 0 chr1 204775274 204775332 -77418332 + (TA)n Simple_repeat Simple_repeat 2 62 0 673 96 67 0 chr1 204775345 204775647 -77418017 + (TA)n Simple_repeat Simple_repeat 1 322 0 18861 165 28 60 chr1 204775647 204777505 -77416159 - L1MA3 LINE L1 -502 7221 5305 2222 59 0 21 chr1 204777505 204777822 -77415842 - AluY SINE Alu 0 311 1 18861 165 28 60 chr1 204777822 204778025 -77415639 - L1MA3 LINE L1 -2418 5305 5097 213 39 0 0 chr1 204778025 204778051 -77415613 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 18861 165 28 60 chr1 204778051 204778368 -77415296 - L1MA3 LINE L1 -2626 5097 4771 1157 85 6 0 chr1 204778368 204778544 -77415120 + (TTCC)n Simple_repeat Simple_repeat 1 177 0 433 102 0 0 chr1 204778545 204778604 -77415060 - AluSc SINE Alu -44 265 207 18861 165 28 60 chr1 204778604 204778637 -77415027 - L1MA3 LINE L1 -2952 4771 4738 1641 99 0 14 chr1 204778637 204778860 -77414804 - AluSg SINE Alu -90 220 1 18861 165 28 60 chr1 204778860 204780520 -77413144 - L1MA3 LINE L1 -2985 4738 3026 387 0 0 0 chr1 204780520 204780563 -77413101 + (TG)n Simple_repeat Simple_repeat 1 43 0 18861 165 28 60 chr1 204780563 204780633 -77413031 - L1MA3 LINE L1 -4697 3026 2955 2148 122 0 16 chr1 204780633 204780944 -77412720 + AluSx SINE Alu 3 308 -4 18861 165 28 60 chr1 204780944 204783789 -77409875 - L1MA3 LINE L1 -4768 2955 510 2031 166 9 23 chr1 204783789 204784055 -77409609 - MER1B DNA MER1_type -2373 339 78 1807 133 45 48 chr1 204784055 204784431 -77409233 - THE1C LTR MaLR 0 375 1 2031 166 9 23 chr1 204784431 204784508 -77409156 - MER1B DNA MER1_type -2634 78 1 2824 167 47 14 chr1 204784508 204785000 -77408664 - L1MA3 LINE L1 -7048 517 10 8287 195 68 40 chr1 204785000 204785962 -77407702 - L1M4 LINE L1 -1141 5241 4308 1655 181 17 7 chr1 204785962 204786254 -77407410 - AluJb SINE Alu -15 297 3 8287 195 68 40 chr1 204786254 204787167 -77406497 - L1M4 LINE L1 -2074 4308 3422 2218 134 0 0 chr1 204787167 204787472 -77406192 - AluSx SINE Alu -7 305 1 8287 195 68 40 chr1 204787472 204787853 -77405811 - L1M4 LINE L1 -2960 3422 3053 2397 87 3 0 chr1 204787853 204788152 -77405512 + AluSq SINE Alu 3 302 -11 8287 195 68 40 chr1 204788152 204788406 -77405258 - L1M4 LINE L1 -3329 3053 2808 219 88 0 0 chr1 204788406 204788440 -77405224 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1894 79 87 4 chr1 204788444 204788698 -77404966 - AluSx SINE Alu -30 282 8 8287 195 68 40 chr1 204788698 204788712 -77404952 - L1M4 LINE L1 -3576 2806 2794 1864 123 97 0 chr1 204788712 204789021 -77404643 - MER44D DNA MER2_type 0 609 1 8287 195 68 40 chr1 204789021 204789965 -77403699 - L1M4 LINE L1 -3588 2794 1571 277 293 49 0 chr1 204790489 204790571 -77403093 + L2 LINE L2 3195 3280 -33 1953 130 36 0 chr1 204790579 204790856 -77402808 - AluSg SINE Alu -23 287 1 270 111 0 0 chr1 204790895 204790931 -77402733 - Alu SINE Alu -266 36 1 26 30 0 0 chr1 204791820 204791853 -77401811 + AT_rich Low_complexity Low_complexity 1 33 0 2033 153 34 3 chr1 204792531 204792858 -77400806 + MER1B DNA MER1_type 1 337 0 512 209 24 157 chr1 204793073 204793283 -77400381 - MIR SINE MIR -2 260 79 2229 102 0 0 chr1 204793299 204793602 -77400062 - AluSx SINE Alu -9 303 1 621 244 0 8 chr1 204793605 204793736 -77399928 - FLAM_A SINE Alu -3 130 1 3208 90 24 2 chr1 204794126 204794581 -77399083 - MER4C LTR ERV1 0 465 1 288 203 34 0 chr1 204795274 204795333 -77398331 - L2 LINE L2 -8 3305 3245 2328 239 104 45 chr1 204796035 204796238 -77397426 - MER21B LTR ERV1 -60 803 613 3775 130 15 97 chr1 204796238 204796991 -77396673 - LTR8 LTR ERV1 0 691 1 2328 239 104 45 chr1 204796991 204797528 -77396136 - MER21B LTR ERV1 -250 613 19 2540 64 0 0 chr1 204797957 204798268 -77395396 + AluY SINE Alu 1 311 0 806 188 87 43 chr1 204798332 204798539 -77395125 + MER20 DNA MER1_type 4 219 0 201 226 0 38 chr1 204798548 204798601 -77395063 - L2 LINE L2 -1074 2240 2190 189 0 0 0 chr1 204798754 204798775 -77394889 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 6258 118 45 21 chr1 204798848 204799244 -77394420 + L1MA5A LINE L1 5054 5439 -858 228 86 0 0 chr1 204799244 204799279 -77394385 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 6258 118 45 21 chr1 204799279 204799401 -77394263 + L1MA5A LINE L1 5439 5557 -740 2406 72 7 0 chr1 204799401 204799705 -77393959 - AluSc SINE Alu -3 306 1 6258 118 45 21 chr1 204799705 204800402 -77393262 + L1MA5A LINE L1 5557 6297 0 2331 55 0 4 chr1 204800407 204800682 -77392982 + AluY SINE Alu 1 274 -37 21 0 0 0 chr1 204800682 204800703 -77392961 + AT_rich Low_complexity Low_complexity 1 21 0 805 184 68 25 chr1 204800703 204800866 -77392798 - AluSg/x SINE Alu -8 304 135 766 118 7 22 chr1 204800891 204801027 -77392637 + L1MB2 LINE L1 6036 6169 -2 34 42 0 0 chr1 204801576 204801624 -77392040 + AT_rich Low_complexity Low_complexity 1 48 0 294 29 0 0 chr1 204801862 204801897 -77391767 + (TG)n Simple_repeat Simple_repeat 2 36 0 23606 22 3 9 chr1 204802018 204805646 -77388018 - L1PA4 LINE L1 -3 6152 2535 2049 80 0 112 chr1 204807093 204807432 -77386232 - AluSx SINE Alu -11 301 1 1487 133 0 0 chr1 204808683 204808917 -77384747 + L1MC3 LINE L1 7545 7778 -7 1916 156 0 0 chr1 204808925 204809213 -77384451 + AluSx SINE Alu 9 296 -16 1159 201 142 31 chr1 204812552 204812945 -77380719 - MLT1C LTR MaLR 0 467 24 1672 193 3 7 chr1 204812996 204813302 -77380362 - AluJo SINE Alu -7 305 1 279 0 0 0 chr1 204813817 204813848 -77379816 + (CA)n Simple_repeat Simple_repeat 1 31 0 14730 197 41 21 chr1 204813848 204814452 -77379212 - L1M1 LINE L1 -523 6482 5892 303 28 0 0 chr1 204814452 204814488 -77379176 + (TG)n Simple_repeat Simple_repeat 1 36 0 14730 197 41 21 chr1 204814488 204815209 -77378455 - L1M1 LINE L1 -1113 5892 5187 396 0 0 0 chr1 204815209 204815253 -77378411 + (TG)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr1 204815252 204815275 -77378389 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 14730 197 41 21 chr1 204815253 204818259 -77375405 - L1M1 LINE L1 -1818 5187 2134 * 19750 20 81 0 chr1 204818257 204821526 -77372138 - L1HS LINE L1 0 6155 2606 3774 247 62 26 chr1 204821515 204822675 -77370989 - L1M1 LINE L1 -4773 2076 875 * 665 251 89 0 chr1 204822819 204822998 -77370666 - MER3 DNA MER1_type -13 196 2 1895 193 64 109 chr1 204823122 204823289 -77370375 - L1MC5 LINE L1 -531 7430 7257 288 0 0 0 chr1 204823289 204823321 -77370343 + (TA)n Simple_repeat Simple_repeat 2 33 0 1895 193 64 109 chr1 204823321 204824044 -77369620 - L1MC5 LINE L1 -704 7257 6620 205 336 65 9 chr1 204824939 204825046 -77368618 - L2 LINE L2 -217 3055 2943 317 141 200 0 chr1 204825569 204825654 -77368010 - L1MB5 LINE L1 -17 6157 6056 2121 112 3 30 chr1 204825656 204825961 -77367703 - AluSg SINE Alu -13 297 1 1631 92 22 0 chr1 204826245 204826473 -77367191 - L1PA13 LINE L1 -19 6144 5912 808 121 21 0 chr1 204827399 204827539 -77366125 + L1MB4 LINE L1 6035 6177 -3 24 0 0 0 chr1 204827953 204827977 -77365687 + GC_rich Low_complexity Low_complexity 1 24 0 2210 72 0 14 chr1 204827980 204828259 -77365405 - AluSx SINE Alu -37 275 1 863 188 0 0 chr1 204828313 204828478 -77365186 - L1MA10 LINE L1 -1 6333 6169 457 234 52 0 chr1 204828495 204828647 -77365017 - L1ME2 LINE L1 -149 6013 5853 * 1681 183 103 46 chr1 204828644 204828935 -77364729 - L1ME2 LINE L1 -596 5570 5297 2098 110 40 7 chr1 204828935 204829235 -77364429 - AluSg SINE Alu 0 310 1 1681 183 103 46 chr1 204829235 204829247 -77364417 - L1ME2 LINE L1 -869 5297 5287 10269 53 11 59 chr1 204829247 204830675 -77362989 - SVA Other Other -3 1383 25 1681 183 103 46 chr1 204830675 204831031 -77362633 - L1ME2 LINE L1 -879 5287 4869 2707 160 73 14 chr1 204831033 204831551 -77362113 - MER44D DNA MER2_type 0 605 2 2046 121 7 0 chr1 204831570 204831889 -77361775 + AluSx SINE Alu 2 322 0 2310 228 57 35 chr1 204831917 204833272 -77360392 - L1ME2 LINE L1 -1381 4765 3264 482 74 0 12 chr1 204833393 204833474 -77360190 + (TC)n Simple_repeat Simple_repeat 1 80 0 1656 190 0 0 chr1 204833474 204833748 -77359916 - AluJo SINE Alu -38 274 1 253 176 69 39 chr1 204833748 204833850 -77359814 - L1ME2 LINE L1 -2979 3167 3063 330 337 87 68 chr1 204833958 204834338 -77359326 + L3 LINE CR1 709 1095 -482 389 359 77 15 chr1 204834414 204834609 -77359055 - MIR3 SINE MIR 0 208 2 2267 110 13 0 chr1 204834707 204835016 -77358648 - AluSp SINE Alu 0 313 1 183 319 44 52 chr1 204835029 204835164 -77358500 + L3 LINE CR1 1405 1538 -39 423 135 180 0 chr1 204835180 204835269 -77358395 - AluJo SINE Alu -12 300 196 814 194 7 13 chr1 204835269 204835424 -77358240 - AluJo SINE Alu -150 162 9 400 239 45 7 chr1 204835464 204835619 -77358045 - L1M4 LINE L1 -2926 3220 3060 531 329 79 28 chr1 204835984 204836033 -77357631 + L3 LINE CR1 320 365 -1212 2362 106 0 0 chr1 204836033 204836336 -77357328 - AluSq SINE Alu -10 303 1 531 329 79 28 chr1 204836336 204836538 -77357126 + L3 LINE CR1 365 584 -993 262 307 29 33 chr1 204836539 204836671 -77356993 + MER5A DNA MER1_type 12 133 -45 625 217 93 0 chr1 204836726 204836855 -77356809 - MER63A DNA MER1_type -1 209 69 629 62 0 0 chr1 204836895 204836975 -77356689 - MADE1 DNA Mariner 0 80 1 465 321 227 23 chr1 204836982 204837589 -77356075 + L3 LINE CR1 803 1533 -44 597 249 16 70 chr1 204837589 204837713 -77355951 + MER5B DNA MER1_type 1 113 -65 2357 91 0 0 chr1 204837713 204838010 -77355654 - AluSg SINE Alu -13 297 1 597 249 16 70 chr1 204838010 204838070 -77355594 + MER5B DNA MER1_type 113 175 -3 249 289 0 0 chr1 204838450 204838526 -77355138 + L1MC5 LINE L1 7820 7895 -66 857 139 0 13 chr1 204838636 204838794 -77354870 - L1MA5 LINE L1 0 6300 6145 28 0 0 0 chr1 204839247 204839275 -77354389 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 204839603 204839625 -77354039 + AT_rich Low_complexity Low_complexity 1 22 0 988 201 34 0 chr1 204839632 204839811 -77353853 + MER5A DNA MER1_type 2 186 -3 1859 137 53 3 chr1 204839996 204840281 -77353383 + AluSq SINE Alu 1 299 -14 1959 144 57 43 chr1 204840654 204841022 -77352642 + Tigger2a DNA MER2_type 1 373 -61 693 218 0 0 chr1 204841024 204841157 -77352507 + AluJ SINE Alu 1 133 -169 605 172 0 0 chr1 204841157 204841256 -77352408 + AluJ SINE Alu 129 227 -85 1448 83 0 0 chr1 204841256 204841437 -77352227 - AluSg SINE Alu -129 181 1 24 53 0 0 chr1 204842249 204842287 -77351377 + AT_rich Low_complexity Low_complexity 1 38 0 216 256 37 85 chr1 204843228 204843310 -77350354 - L2 LINE L2 -189 3083 3006 828 216 56 52 chr1 204843310 204843578 -77350086 - ORSL DNA AcHobo 0 275 7 22 35 0 0 chr1 204843863 204843892 -77349772 + AT_rich Low_complexity Low_complexity 1 29 0 781 310 65 0 chr1 204844815 204845047 -77348617 + MIR SINE MIR 9 255 -7 257 231 0 0 chr1 204845052 204845104 -77348560 + LTR30 LTR ERV1 1 52 -670 1413 97 153 1 chr1 204845104 204845353 -77348311 + LTR12 LTR ERV1 57 2032 -406 334 225 11 0 chr1 204845353 204845442 -77348222 + LTR30 LTR ERV1 553 642 -80 724 61 0 96 chr1 204845445 204845560 -77348104 + LTR12 LTR ERV1 482 585 -129 1334 148 181 57 chr1 204845572 204845913 -77347751 + Charlie1b DNA MER1_type 1 397 -2364 2203 68 41 3 chr1 204845913 204846206 -77347458 - AluY SINE Alu -7 304 1 1334 148 181 57 chr1 204846206 204846250 -77347414 + Charlie1b DNA MER1_type 397 434 -89 3705 76 20 80 chr1 204846298 204846422 -77347242 - MER41A LTR ERV1 0 554 424 2099 96 4 0 chr1 204846422 204846693 -77346971 + AluSq SINE Alu 17 288 -25 3705 76 20 80 chr1 204846693 204847157 -77346507 - MER41A LTR ERV1 -130 424 1 295 318 182 0 chr1 204847509 204847641 -77346023 - MER5A DNA MER1_type 0 189 34 363 358 8 0 chr1 204847698 204847818 -77345846 - MIR SINE MIR -114 148 28 5447 130 23 44 chr1 204847911 204849389 -77344275 - L1PA15 LINE L1 -22 6143 4699 1511 174 4 15 chr1 204849704 204849969 -77343695 - AluJo SINE Alu -9 303 42 1345 160 77 28 chr1 204850189 204850271 -77343393 - MER33 DNA MER1_type -2263 322 245 1996 164 134 7 chr1 204850271 204850680 -77342984 - LOR1b LTR ERV1 0 461 1 1345 160 77 28 chr1 204850680 204850918 -77342746 - MER33 DNA MER1_type -2340 245 1 2340 105 0 6 chr1 204850954 204851268 -77342396 + AluSx SINE Alu 1 312 0 3977 131 41 65 chr1 204851572 204852376 -77341288 - LTR1 LTR ERV1 0 785 1 216 388 94 14 chr1 204852610 204852896 -77340768 - L2 LINE L2 -642 2672 2364 851 279 19 31 chr1 204852915 204853173 -77340491 - MIR SINE MIR 0 262 8 200 147 0 0 chr1 204853184 204853218 -77340446 - L2 LINE L2 -954 2360 2327 2779 119 25 25 chr1 204853221 204853665 -77339999 - LOR1a LTR ERV1 0 497 54 250 244 30 101 chr1 204853792 204853960 -77339704 - L2 LINE L2 -1260 2054 1899 265 125 18 71 chr1 204853964 204854020 -77339644 + MLT1C LTR MaLR 58 110 -357 260 307 79 18 chr1 204854860 204854974 -77338690 - L3 LINE CR1 -40 1537 1417 * 447 371 98 46 chr1 204854972 204855320 -77338344 - L2 LINE L2 -7 3265 2900 290 319 24 66 chr1 204855422 204855588 -77338076 - MIR3 SINE MIR -14 194 36 221 260 0 0 chr1 204855647 204855697 -77337967 - MIR SINE MIR -30 232 183 195 42 0 0 chr1 204855797 204855821 -77337843 + (TTGGGG)n Simple_repeat Simple_repeat 6 29 0 822 181 78 0 chr1 204855856 204856022 -77337642 - LTR47A LTR ERVL 0 452 274 2721 237 41 14 chr1 204856516 204857043 -77336621 - L1ME1 LINE L1 -23 6537 5985 2171 132 3 0 chr1 204857043 204857354 -77336310 - AluSx SINE Alu 0 312 1 2721 237 41 14 chr1 204857354 204857531 -77336133 - L1ME1 LINE L1 -575 5985 5814 528 141 82 30 chr1 204857529 204857664 -77336000 - L1MB7 LINE L1 0 6184 6043 * 5213 211 65 48 chr1 204857660 204858792 -77334872 - L1ME1 LINE L1 -743 5797 4678 1646 148 110 0 chr1 204858792 204859055 -77334609 - AluSx SINE Alu -20 292 1 5213 211 65 48 chr1 204859055 204859740 -77333924 - L1ME1 LINE L1 -1862 4678 4006 1513 197 27 67 chr1 204859742 204860117 -77333547 - MLT1A1 LTR MaLR -2 363 4 3822 230 64 45 chr1 204860120 204860217 -77333447 - L1ME1 LINE L1 -2530 4010 3916 2087 123 0 7 chr1 204860217 204860509 -77333155 - AluSx SINE Alu -22 290 1 3822 230 64 45 chr1 204860509 204860529 -77333135 - L1ME1 LINE L1 -2624 3916 3898 2212 123 0 3 chr1 204860529 204860830 -77332834 - AluSx SINE Alu -12 300 1 3822 230 64 45 chr1 204860830 204863690 -77329974 - L1ME1 LINE L1 -2642 3898 997 2208 115 0 7 chr1 204863690 204863994 -77329670 - AluSg SINE Alu -8 302 1 3822 230 64 45 chr1 204863994 204864077 -77329587 - L1ME1 LINE L1 -5543 997 917 234 176 0 0 chr1 204864363 204864414 -77329250 + GA-rich Low_complexity Low_complexity 1 51 0 226 322 20 34 chr1 204864831 204864977 -77328687 - L1ME1 LINE L1 -6393 147 4 694 127 64 0 chr1 204864987 204865097 -77328567 - MLT1D LTR MaLR -46 459 343 3620 93 27 44 chr1 204865143 204865731 -77327933 - L1PB3 LINE L1 0 6154 5577 198 0 0 0 chr1 204866991 204867013 -77326651 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 237 365 67 19 chr1 204867117 204867221 -77326443 + MIR SINE MIR 32 140 -122 3744 176 62 16 chr1 204867240 204867449 -77326215 - MER63C DNA MER1_type -130 930 732 2462 77 6 0 chr1 204867449 204867760 -77325904 - AluSp SINE Alu 0 313 1 3744 176 62 16 chr1 204867760 204867962 -77325702 - MER63C DNA MER1_type -328 732 541 1773 167 13 20 chr1 204867962 204868268 -77325396 + AluJo SINE Alu 3 306 -6 3744 176 62 16 chr1 204868268 204868671 -77324993 - MER63C DNA MER1_type -519 541 77 368 39 0 20 chr1 204868671 204868722 -77324942 + (CA)n Simple_repeat Simple_repeat 2 51 0 2101 217 51 47 chr1 204869580 204870289 -77323375 - L1M4 LINE L1 -1278 4868 4157 198 273 200 9 chr1 204872107 204872217 -77321447 + MIR SINE MIR 48 178 -84 182 345 17 0 chr1 204872209 204872267 -77321397 + L2 LINE L2 3237 3295 -18 * 1724 164 38 0 chr1 204872326 204872613 -77321051 + AluJb SINE Alu 1 298 -14 443 317 147 10 chr1 204872951 204873263 -77320401 + L2 LINE L2 2890 3244 -69 265 220 3 23 chr1 204873322 204873408 -77320256 + L1MC5 LINE L1 7702 7783 -2 1855 165 0 3 chr1 204873496 204873805 -77319859 - AluJb SINE Alu -4 308 1 1121 226 175 3 chr1 204874020 204874312 -77319352 + L1MC4 LINE L1 6457 6798 -1244 263 157 0 180 chr1 204874918 204875007 -77318657 + L1MC4 LINE L1 6793 6865 -1177 * 1463 218 27 15 chr1 204874998 204875333 -77318331 + L1MC4 LINE L1 7274 7612 -430 * 2825 197 32 43 chr1 204875331 204876215 -77317449 - L1M4 LINE L1 -669 5505 4634 896 243 94 12 chr1 204876218 204876547 -77317117 + Charlie7 DNA MER1_type 1726 2081 -531 1585 166 23 46 chr1 204876550 204876857 -77316807 - AluJo SINE Alu -12 300 1 1418 100 0 100 chr1 204876865 204877125 -77316539 + Tigger4(Zombi) DNA MER2_type 365 598 -2133 1253 141 25 37 chr1 204877135 204877158 -77316506 + L1MA4 LINE L1 5782 5804 -496 297 0 0 0 chr1 204877158 204877191 -77316473 + (CA)n Simple_repeat Simple_repeat 2 34 0 1253 141 25 37 chr1 204877191 204877409 -77316255 + L1MA4 LINE L1 5804 6020 -280 271 104 26 217 chr1 204877414 204877472 -77316192 + L1MB3 LINE L1 6086 6153 -27 2189 111 3 0 chr1 204877472 204877761 -77315903 + AluSx SINE Alu 3 292 -20 759 21 115 0 chr1 204877765 204877861 -77315803 + U6 snRNA snRNA 1 107 0 22255 27 1 0 chr1 204877861 204881326 -77312338 + L1PA4 LINE L1 2690 6155 0 271 104 26 217 chr1 204881326 204881376 -77312288 + L1MB3 LINE L1 6154 6178 -2 13134 124 39 7 chr1 204881382 204883464 -77310200 + Tigger4(Zombi) DNA MER2_type 582 2731 0 2118 137 0 3 chr1 204883504 204883811 -77309853 - AluJb SINE Alu -6 306 1 2531 69 0 0 chr1 204883821 204884126 -77309538 - AluY SINE Alu -6 305 1 420 258 246 6 chr1 204884127 204884329 -77309335 - MIR SINE MIR -15 247 2 1174 185 120 62 chr1 204884545 204884870 -77308794 + MER2 DNA MER2_type 1 344 0 436 300 144 12 chr1 204886554 204886804 -77306860 + L1ME4a LINE L1 5692 5974 -147 2471 61 0 0 chr1 204886891 204887185 -77306479 - AluY SINE Alu -17 294 1 225 226 83 24 chr1 204887891 204887975 -77305689 - LTR67 LTR ERVL -11 546 458 5664 84 35 17 chr1 204888154 204888494 -77305170 - L1MA2 LINE L1 0 6304 5972 258 32 0 0 chr1 204888494 204888525 -77305139 + (TC)n Simple_repeat Simple_repeat 1 31 0 5664 84 35 17 chr1 204888525 204889025 -77304639 - L1MA2 LINE L1 -332 5972 5449 457 227 67 47 chr1 204889200 204889254 -77304410 - L1MEd LINE L1 -5964 155 104 1067 239 75 36 chr1 204889254 204889614 -77304050 - MLT1A2 LTR MaLR 0 374 1 457 227 67 47 chr1 204889614 204889709 -77303955 - L1MEd LINE L1 -6015 104 3 414 348 56 52 chr1 204889955 204890225 -77303439 + L2 LINE L2 3000 3270 -2 423 220 69 33 chr1 204890357 204891565 -77302099 - L1MD2 LINE L1 -3 7804 6273 2165 137 22 22 chr1 204891565 204891929 -77301735 + THE1B LTR MaLR 1 364 0 423 220 69 33 chr1 204891929 204892045 -77301619 - L1MD2 LINE L1 -1534 6273 6163 2308 68 0 56 chr1 204893426 204893748 -77299916 - AluY SINE Alu -7 304 1 1330 183 75 92 chr1 204893818 204894189 -77299475 - MLT1A1 LTR MaLR 0 365 1 815 124 0 29 chr1 204894343 204894480 -77299184 + FLAM_C SINE Alu 1 133 0 2857 149 36 2 chr1 204946335 204946804 -77246860 + MER41C LTR ERV1 2 486 -68 503 69 0 0 chr1 204946805 204946877 -77246787 - AluSx SINE Alu -6 305 234 1352 116 6 0 chr1 204946878 204947059 -77246605 - AluSx SINE Alu -115 197 16 400 317 140 5 chr1 204947197 204947383 -77246281 + Charlie2 DNA MER1_type 107 317 -2465 848 190 178 0 chr1 204947401 204947643 -77246021 + Charlie2 DNA MER1_type 1855 2139 -723 482 219 112 16 chr1 204947794 204947981 -77245683 + Charlie2 DNA MER1_type 2658 2862 0 318 257 95 0 chr1 204948351 204948456 -77245208 - MIR3 SINE MIR -29 179 65 * 367 306 43 19 chr1 204948455 204948702 -77244962 + L2 LINE L2 2489 2786 -528 411 266 62 0 chr1 204948764 204948877 -77244787 + L2 LINE L2 3151 3270 -2 21 0 0 0 chr1 204949128 204949149 -77244515 + AT_rich Low_complexity Low_complexity 1 21 0 1794 160 13 19 chr1 204949292 204949599 -77244065 - AluJo SINE Alu -7 305 1 247 264 14 0 chr1 204949688 204949760 -77243904 - MER103 DNA DNA -12 154 82 887 167 0 119 chr1 204949777 204949987 -77243677 - MER20 DNA MER1_type 0 219 35 574 300 135 42 chr1 204950190 204950735 -77242929 + L2 LINE L2 2727 3313 0 273 59 98 0 chr1 204950736 204950787 -77242877 - L1MB7 LINE L1 -17 6167 6112 1609 113 19 0 chr1 204950788 204951001 -77242663 + AluSq SINE Alu 1 217 -96 246 62 0 0 chr1 204951013 204951045 -77242619 + (GGGAGA)n Simple_repeat Simple_repeat 3 34 0 4387 148 56 36 chr1 204951057 204951868 -77241796 - L1MB7 LINE L1 -64 6120 5287 1800 74 0 17 chr1 204951868 204952098 -77241566 + AluY SINE Alu 71 296 -15 4387 148 56 36 chr1 204952098 204952473 -77241191 - L1MB7 LINE L1 -897 5287 4921 200 333 44 22 chr1 204952567 204952657 -77241007 - L2 LINE L2 -26 3246 3155 1082 45 0 0 chr1 204952987 204953119 -77240545 - L1PA4 LINE L1 -3 6152 6021 580 110 66 0 chr1 204953125 204953216 -77240448 - AluSg/x SINE Alu -20 292 196 830 221 74 5 chr1 204953618 204953808 -77239856 - MLT1B LTR MaLR 0 390 188 267 140 0 0 chr1 204953812 204953862 -77239802 + (GA)n Simple_repeat Simple_repeat 1 50 0 664 189 72 40 chr1 204953878 204954073 -77239591 - MLT1B LTR MaLR -183 191 1 272 297 109 0 chr1 204954190 204954291 -77239373 + MIR3 SINE MIR 97 208 0 888 171 0 0 chr1 204954443 204954589 -77239075 + AluJb SINE Alu 157 302 -10 494 269 154 36 chr1 204954812 204955088 -77238576 - L1ME4a LINE L1 -108 6013 5771 2142 136 0 0 chr1 204955088 204955383 -77238281 + AluSx SINE Alu 1 295 -17 494 269 154 36 chr1 204955383 204955928 -77237736 - L1ME4a LINE L1 -350 5771 5089 399 21 0 0 chr1 204956314 204956362 -77237302 + (TG)n Simple_repeat Simple_repeat 2 49 0 2227 105 0 26 chr1 204956467 204956773 -77236891 - AluSx SINE Alu -14 298 1 25 0 0 0 chr1 204956956 204956981 -77236683 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr1 204957126 204957154 -77236510 + AT_rich Low_complexity Low_complexity 1 28 0 208 231 0 0 chr1 204957260 204957299 -77236365 + polypurine Low_complexity Low_complexity 3 41 0 466 204 189 17 chr1 204957953 204958149 -77235515 + Charlie8 DNA MER1_type 33 301 -2116 2015 114 80 0 chr1 204958605 204958894 -77234770 - AluSx SINE Alu 0 312 1 25 83 0 0 chr1 204959994 204960054 -77233610 + AT_rich Low_complexity Low_complexity 1 60 0 717 188 8 8 chr1 204960901 204961034 -77232630 - FLAM_C SINE Alu 0 133 1 21 0 0 0 chr1 204962590 204962611 -77231053 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr1 204962657 204962685 -77230979 + (T)n Simple_repeat Simple_repeat 1 28 0 1948 59 0 8 chr1 204962694 204962930 -77230734 - AluY SINE Alu -77 234 1 192 77 0 0 chr1 204963223 204963249 -77230415 + (TCCCC)n Simple_repeat Simple_repeat 3 28 0 1172 289 91 10 chr1 204963251 204963735 -77229929 + ERVL LTR ERVL 147 669 -4327 1053 294 77 6 chr1 204963801 204964128 -77229536 + ERVL LTR ERVL 797 1146 -3850 3850 331 72 20 chr1 204964209 204966433 -77227231 + ERVL LTR ERVL 2344 4756 -1008 421 198 19 0 chr1 204966448 204966554 -77227110 + GA-rich Low_complexity Low_complexity 1 108 0 2407 74 10 13 chr1 204967187 204967496 -77226168 - AluY SINE Alu -1 310 3 294 174 0 174 chr1 204968231 204968340 -77225324 + MER103 DNA DNA 3 92 -74 227 279 23 0 chr1 204968478 204968564 -77225100 - MIR SINE MIR -72 136 49 1616 90 0 5 chr1 204970212 204970412 -77223252 + AluSx SINE Alu 1 199 -113 307 77 115 0 chr1 204970413 204970465 -77223199 + AluSx SINE Alu 241 298 -4 487 216 40 16 chr1 204970581 204970706 -77222958 + MIR SINE MIR 53 180 -82 219 154 0 0 chr1 204971427 204971466 -77222198 + L2 LINE L2 3271 3309 -4 1784 167 3 13 chr1 204971581 204971892 -77221772 + AluJb SINE Alu 1 308 -4 1339 175 169 12 chr1 204971927 204972253 -77221411 + MLT1C LTR MaLR 1 377 -90 971 253 44 28 chr1 204972253 204972507 -77221157 - L1M4 LINE L1 -1827 4319 4057 2408 93 64 9 chr1 204972507 204972850 -77220814 - THE1B LTR MaLR -2 362 1 971 253 44 28 chr1 204972850 204972915 -77220749 - L1M4 LINE L1 -2089 4057 3995 315 356 54 7 chr1 204972930 204973079 -77220585 - L1M4 LINE L1 -1311 4835 4680 2150 128 0 7 chr1 204973103 204973401 -77220263 - AluSx SINE Alu -16 296 1 256 266 48 65 chr1 204973407 204973531 -77220133 - L1M4 LINE L1 -1538 4608 4487 2354 114 68 0 chr1 204973543 204973894 -77219770 + THE1C LTR MaLR 1 375 0 661 231 59 27 chr1 204974232 204974299 -77219365 - L1ME3A LINE L1 -271 5899 5836 2264 108 10 7 chr1 204974299 204974606 -77219058 - AluSg SINE Alu -2 308 1 661 231 59 27 chr1 204974606 204974759 -77218905 - L1ME3A LINE L1 -334 5836 5672 873 165 0 0 chr1 204974867 204975000 -77218664 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr1 204975257 204975280 -77218384 + AT_rich Low_complexity Low_complexity 1 23 0 280 91 36 18 chr1 204975305 204975360 -77218304 - L1M4 LINE L1 -2208 3938 3883 2283 107 0 3 chr1 204975674 204975972 -77217692 + AluSg SINE Alu 1 297 -13 1653 170 35 40 chr1 204977069 204977445 -77216219 - MLT1A2 LTR MaLR 0 374 1 265 266 26 44 chr1 204977661 204977774 -77215890 + MER5A DNA MER1_type 21 131 -58 311 308 0 43 chr1 204978565 204978682 -77214982 + L2 LINE L2 2910 3021 -251 639 226 62 15 chr1 204979256 204979422 -77214242 + MIR SINE MIR 19 184 -62 201 253 155 82 chr1 204979721 204979812 -77213852 + MIR SINE MIR 46 129 -133 2391 87 0 0 chr1 204979812 204980123 -77213541 + AluY SINE Alu 1 311 0 201 253 155 82 chr1 204980123 204980225 -77213439 + MIR SINE MIR 129 253 -9 23 0 0 0 chr1 204980560 204980583 -77213081 + AT_rich Low_complexity Low_complexity 1 23 0 207 254 16 32 chr1 204980700 204980763 -77212901 - L2 LINE L2 -309 2963 2902 2384 78 0 7 chr1 204980816 204981112 -77212552 - AluY SINE Alu -17 294 1 213 319 87 39 chr1 204981115 204981344 -77212320 - L2 LINE L2 -1092 2222 1983 1972 132 0 17 chr1 204981535 204981831 -77211833 - AluSx SINE Alu -4 308 18 490 248 57 0 chr1 204981975 204982116 -77211548 + MER112 DNA MER1_type 99 247 -13 218 194 0 0 chr1 204983371 204983407 -77210257 + polypurine Low_complexity Low_complexity 3 38 0 241 197 28 0 chr1 204984110 204984181 -77209483 + CT-rich Low_complexity Low_complexity 4 76 0 338 230 0 71 chr1 204984278 204984333 -77209331 - MER112 DNA MER1_type -8 252 195 1934 136 55 3 chr1 204984333 204984663 -77209001 - MER7A DNA MER2_type -1 345 1 338 230 0 71 chr1 204984663 204984733 -77208931 - MER112 DNA MER1_type -65 195 136 23 0 0 0 chr1 204985676 204985699 -77207965 + AT_rich Low_complexity Low_complexity 1 23 0 988 149 19 0 chr1 204985804 204985965 -77207699 + MER119 DNA MER1_type 406 569 -14 2109 121 0 10 chr1 204986081 204986379 -77207285 - AluSg1 SINE Alu -14 295 1 191 227 45 0 chr1 204986837 204986881 -77206783 - L2 LINE L2 0 3313 3268 1538 217 16 99 chr1 204986907 204987020 -77206644 + L1MB8 LINE L1 5667 5788 -390 319 0 0 0 chr1 204987020 204987055 -77206609 + U2 snRNA snRNA 1 35 -153 1538 217 16 99 chr1 204987055 204987464 -77206200 + L1MB8 LINE L1 5788 6177 -1 191 325 49 103 chr1 204987513 204987716 -77205948 - L2 LINE L2 -108 3164 2973 942 183 18 0 chr1 204988022 204988186 -77205478 + MER119 DNA MER1_type 403 569 -14 402 239 47 73 chr1 204988413 204988714 -77204950 + L1ME1 LINE L1 798 1090 -5029 1630 270 71 33 chr1 204988723 204988882 -77204782 - ERVL LTR ERVL -406 5358 5207 1888 162 0 7 chr1 204988882 204989185 -77204479 - AluSx SINE Alu -11 301 1 1630 270 71 33 chr1 204989185 204989599 -77204065 - ERVL LTR ERVL -557 5207 4763 1322 229 73 33 chr1 204989680 204990078 -77203586 - ERVL LTR ERVL -1119 4645 4232 1039 340 85 6 chr1 204990051 204990569 -77203095 - ERVL LTR ERVL -3187 2577 2019 * 1660 200 118 0 chr1 204990582 204990947 -77202717 + MLT1E3 LTR MaLR 217 624 0 1423 338 36 14 chr1 204990949 204991611 -77202053 - ERVL LTR ERVL -3764 2000 1324 481 254 124 57 chr1 204992024 204992057 -77201607 - MIR SINE MIR -7 255 226 2228 87 3 52 chr1 204992057 204992367 -77201297 - AluSx SINE Alu -17 295 1 481 254 124 57 chr1 204992367 204992542 -77201122 - MIR SINE MIR -36 226 33 2818 159 62 47 chr1 204992798 204993414 -77200250 - L1MB7 LINE L1 -19 6165 5541 2069 126 33 0 chr1 204994245 204994547 -77199117 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 204995111 204995139 -77198525 + AT_rich Low_complexity Low_complexity 1 28 0 427 204 61 0 chr1 204997219 204997317 -77196347 + L1ME1 LINE L1 2709 2812 -3317 * 4319 208 73 43 chr1 204997296 204997994 -77195670 + L1ME1 LINE L1 3953 4629 -1688 2020 122 28 0 chr1 204997994 204998281 -77195383 + AluSx SINE Alu 1 295 -17 4319 208 73 43 chr1 204998281 204999724 -77193940 + L1ME1 LINE L1 4629 6317 0 306 181 83 14 chr1 204999725 204999797 -77193867 + HAL1 LINE L1 1388 1464 -1043 29 28 0 0 chr1 205000444 205000480 -77193184 + AT_rich Low_complexity Low_complexity 1 36 0 1836 170 7 0 chr1 205000570 205000864 -77192800 + AluJb SINE Alu 1 296 -16 420 143 0 0 chr1 205001044 205001114 -77192550 + (TA)n Simple_repeat Simple_repeat 2 71 0 1197 138 25 5 chr1 205001114 205001310 -77192354 + MER2 DNA MER2_type 2 201 -144 257 218 73 0 chr1 205001359 205001414 -77192250 + MER2 DNA MER2_type 268 326 -19 1978 290 139 37 chr1 205002357 205002917 -77190747 + L2 LINE L2 1960 2461 -852 2193 109 0 7 chr1 205002917 205003220 -77190444 - AluSg SINE Alu -9 301 1 1978 290 139 37 chr1 205003220 205003869 -77189795 + L2 LINE L2 2461 3297 -16 424 46 200 0 chr1 205004098 205004163 -77189501 + MADE1 DNA Mariner 1 78 -2 203 354 115 10 chr1 205004279 205004375 -77189289 + L2 LINE L2 3204 3309 -4 318 259 138 31 chr1 205004693 205004843 -77188821 + MIR3 SINE MIR 10 176 -63 674 321 36 16 chr1 205006053 205006361 -77187303 + L1MC4a LINE L1 5512 5825 -1983 2093 120 9 33 chr1 205006400 205006733 -77186931 - MER1B DNA MER1_type -14 325 1 373 208 14 0 chr1 205006753 205006825 -77186839 + L1ME3A LINE L1 5650 5722 -448 6484 122 39 8 chr1 205006829 205007889 -77185775 + Tigger3b DNA MER2_type 1 1092 -139 1161 168 178 19 chr1 205007901 205008210 -77185454 + L1ME3A LINE L1 5808 6165 -5 309 196 65 75 chr1 205008218 205008325 -77185339 + L1MC4a LINE L1 5817 5922 -1886 447 350 133 0 chr1 205008641 205008867 -77184797 + MIR SINE MIR 1 256 -6 1664 166 17 17 chr1 205009224 205009519 -77184145 - AluJo SINE Alu -15 297 3 2135 114 0 7 chr1 205010007 205010304 -77183360 + AluSx SINE Alu 1 295 -17 204 158 26 0 chr1 205010306 205010344 -77183320 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 4513 206 38 4 chr1 205010396 205012216 -77181448 - L1MB5 LINE L1 0 6174 4236 749 293 206 13 chr1 205012303 205012888 -77180776 + L2 LINE L2 2620 3313 0 366 329 44 25 chr1 205012916 205013074 -77180590 - MIR SINE MIR -6 256 96 2295 93 0 3 chr1 205013229 205013529 -77180135 + AluSx SINE Alu 1 299 -13 819 244 107 33 chr1 205013985 205014227 -77179437 + MIR SINE MIR 2 261 -1 277 323 30 10 chr1 205014259 205014358 -77179306 - MIR SINE MIR -56 206 106 2148 99 7 0 chr1 205014572 205014855 -77178809 + AluSc SINE Alu 1 285 -24 260 53 26 0 chr1 205014855 205014893 -77178771 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 2213 106 7 0 chr1 205016039 205016340 -77177324 + AluSq SINE Alu 1 303 -10 1640 185 13 7 chr1 205016538 205016846 -77176818 + AluJb SINE Alu 1 310 -2 2303 112 0 0 chr1 205017143 205017447 -77176217 + AluSx SINE Alu 3 306 -6 673 126 17 8 chr1 205017447 205017558 -77176106 - FLAM_C SINE Alu -197 115 1 1945 143 7 10 chr1 205018132 205018440 -77175224 - AluJb SINE Alu -1 311 5 22 0 0 0 chr1 205018770 205018792 -77174872 + AT_rich Low_complexity Low_complexity 1 22 0 700 242 79 16 chr1 205018901 205019091 -77174573 - MIR SINE MIR -49 213 12 1687 155 4 0 chr1 205019183 205019435 -77174229 + AluJb SINE Alu 1 253 -59 243 288 12 50 chr1 205019902 205019982 -77173682 + L2 LINE L2 3237 3313 0 397 197 118 31 chr1 205021154 205021281 -77172383 + MIR SINE MIR 112 249 -13 252 86 0 0 chr1 205021615 205021650 -77172014 + (T)n Simple_repeat Simple_repeat 1 35 0 7191 80 37 1 chr1 205021665 205023442 -77170222 - L1PA7 LINE L1 -1 6153 4340 2800 112 9 27 chr1 205023442 205023889 -77169775 + L1P LINE L1 1985 2423 -3723 2130 103 14 3 chr1 205024355 205024646 -77169018 - AluSg SINE Alu -16 294 1 2000 139 7 0 chr1 205026347 205026642 -77167022 + AluSx SINE Alu 3 299 -13 2330 162 18 30 chr1 205028256 205028695 -77164969 - Tigger2a DNA MER2_type 0 434 1 695 222 11 6 chr1 205028815 205028991 -77164673 - Charlie2a DNA MER1_type -2 2860 2684 1107 202 165 64 chr1 205029051 205029831 -77163833 - Charlie2a DNA MER1_type -346 2516 1579 656 207 67 161 chr1 205029831 205030210 -77163454 - MER34 LTR ERV1 0 542 238 2849 13 0 0 chr1 205030210 205030522 -77163142 + AluYb8 SINE Alu 1 312 -6 656 207 67 161 chr1 205030522 205030740 -77162924 - MER34 LTR ERV1 -304 238 1 1107 202 165 64 chr1 205030740 205030762 -77162902 - Charlie2a DNA MER1_type -1283 1579 1561 315 0 0 0 chr1 205030801 205030836 -77162828 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr1 205030835 205030859 -77162805 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 354 336 55 8 chr1 205031158 205031286 -77162378 - L2 LINE L2 -3 3269 3136 199 260 70 100 chr1 205031422 205031522 -77162142 - L2 LINE L2 -166 3106 3010 221 181 53 138 chr1 205031666 205031760 -77161904 + MIR SINE MIR 130 215 -47 194 250 0 0 chr1 205033805 205033853 -77159811 - L2 LINE L2 -5 3308 3261 2269 100 0 0 chr1 205034201 205034492 -77159172 + AluSg SINE Alu 3 293 -17 23 78 0 0 chr1 205034563 205034614 -77159050 + AT_rich Low_complexity Low_complexity 1 51 0 375 197 23 121 chr1 205034831 205034963 -77158701 - MLT1H LTR MaLR -12 537 419 255 203 85 0 chr1 205035170 205035229 -77158435 - MLT1I LTR MaLR -289 120 57 418 281 172 25 chr1 205035354 205035726 -77157938 + L1MC/D LINE L1 5361 5807 -450 1272 135 0 29 chr1 205035810 205036017 -77157647 - AluJo SINE Alu -37 275 75 2107 117 7 7 chr1 205036246 205036544 -77157120 + AluSx SINE Alu 1 298 -14 2158 118 0 16 chr1 205036698 205037013 -77156651 - AluSx SINE Alu -2 310 1 403 279 133 12 chr1 205037699 205037864 -77155800 + MIR SINE MIR 21 205 -57 390 252 61 91 chr1 205038270 205038326 -77155338 + L1M4 LINE L1 3689 3745 -2401 4552 107 42 7 chr1 205038326 205039064 -77154600 - L1MA5A LINE L1 -10 6287 5524 390 252 61 91 chr1 205039064 205039237 -77154427 + L1M4 LINE L1 3745 3911 -2235 194 157 59 20 chr1 205039389 205039440 -77154224 + MIR3 SINE MIR 149 201 -7 235 265 20 0 chr1 205039542 205039591 -77154073 - MIR SINE MIR -163 99 50 393 329 48 14 chr1 205039654 205039800 -77153864 - MER5A DNA MER1_type -2 187 37 23 0 0 0 chr1 205040268 205040291 -77153373 + AT_rich Low_complexity Low_complexity 1 23 0 1640 181 13 26 chr1 205040942 205041245 -77152419 + AluJo SINE Alu 1 299 -13 345 166 15 9 chr1 205041445 205041519 -77152145 - LTR37A LTR ERV1 -72 396 292 612 178 70 70 chr1 205041638 205041823 -77151841 - LTR37A LTR ERV1 -220 206 22 522 289 15 37 chr1 205042213 205042348 -77151316 - L2 LINE L2 -5 3267 3136 1260 127 19 5 chr1 205042475 205042687 -77150977 - L1MD1 LINE L1 0 6242 6028 977 146 229 86 chr1 205042691 205042818 -77150846 + MER44D DNA MER2_type 1 108 -2383 1299 174 98 11 chr1 205042818 205043093 -77150571 - AluJo SINE Alu -13 299 1 977 146 229 86 chr1 205043093 205043245 -77150419 + MER44D DNA MER2_type 108 590 -19 1537 153 12 24 chr1 205043246 205043500 -77150164 - AluSx SINE Alu -61 251 1 985 226 127 10 chr1 205043500 205043893 -77149771 - L1MDb LINE L1 -5061 1348 910 378 0 0 0 chr1 205043893 205043935 -77149729 + (CA)n Simple_repeat Simple_repeat 2 43 0 743 291 100 51 chr1 205043963 205044433 -77149231 + Tigger8 DNA MER2_type 126 618 -48 1220 249 65 63 chr1 205044468 205045097 -77148567 - LTR51 LTR ERV1 -14 657 73 221 219 31 31 chr1 205045277 205045341 -77148323 - L2 LINE L2 -4 3309 3246 2256 102 3 0 chr1 205045651 205045944 -77147720 + AluSc SINE Alu 1 294 -15 300 321 135 40 chr1 205045973 205046424 -77147240 + L2 LINE L2 1323 1816 -1498 448 345 93 31 chr1 205046758 205047112 -77146552 + L2 LINE L2 2286 2661 -653 999 201 61 18 chr1 205047140 205047418 -77146246 + MER33 DNA MER1_type 1 290 -34 459 289 62 66 chr1 205047541 205047752 -77145912 + L2 LINE L2 3101 3310 -3 292 329 128 48 chr1 205047760 205048049 -77145615 + L2 LINE L2 2953 3264 -8 2287 96 7 0 chr1 205048201 205048503 -77145161 + AluSp SINE Alu 1 304 -9 279 278 59 91 chr1 205048912 205049099 -77144565 + MIR SINE MIR 25 205 -57 25 31 0 0 chr1 205049555 205049587 -77144077 + AT_rich Low_complexity Low_complexity 1 32 0 2795 255 49 15 chr1 205050170 205051053 -77142611 + L1ME1 LINE L1 5190 6099 -67 181 339 16 0 chr1 205051453 205051515 -77142149 + MIR SINE MIR 172 234 -28 1723 220 37 19 chr1 205052002 205052430 -77141234 + MER63B DNA MER1_type 1 436 0 239 283 0 0 chr1 205054273 205054326 -77139338 - L2 LINE L2 0 3313 3261 341 355 190 14 chr1 205054460 205054750 -77138914 + L2 LINE L2 2932 3272 0 344 344 92 43 chr1 205055064 205055227 -77138437 + MIR3 SINE MIR 28 198 -10 2168 79 0 0 chr1 205055662 205055929 -77137735 - AluY SINE Alu -7 304 38 1777 147 29 29 chr1 205056196 205056502 -77137162 + AluJo SINE Alu 1 306 -6 300 223 76 82 chr1 205056880 205057064 -77136600 + HAL1 LINE L1 2152 2334 -173 43103 29 21 1 chr1 205057078 205063109 -77130555 - L1HS LINE L1 0 6155 1 25 31 0 0 chr1 205063272 205063304 -77130360 + AT_rich Low_complexity Low_complexity 1 32 0 215 261 118 50 chr1 205063707 205063826 -77129838 + L2 LINE L2 3181 3307 -6 842 78 0 0 chr1 205064357 205064460 -77129204 - AluSq/x SINE Alu -209 103 1 2301 99 0 0 chr1 205064673 205064966 -77128698 + AluSq SINE Alu 1 293 -20 2375 250 201 26 chr1 205065114 205065493 -77128171 + L1M4 LINE L1 2439 2750 -3396 1979 163 3 0 chr1 205065493 205065794 -77127870 + AluJb SINE Alu 1 302 -10 2375 250 201 26 chr1 205065794 205066619 -77127045 + L1M4 LINE L1 2750 3429 -2717 2231 122 0 0 chr1 205066619 205066922 -77126742 + AluSx SINE Alu 1 303 -9 2375 250 201 26 chr1 205066922 205067415 -77126249 + L1M4 LINE L1 3429 4434 -1712 1152 278 37 25 chr1 205067432 205067867 -77125797 + L1M4 LINE L1 4625 5064 -1082 263 256 124 22 chr1 205067853 205067990 -77125674 + L1ME3A LINE L1 6004 6154 -16 * 502 261 35 0 chr1 205068044 205068186 -77125478 + L1MEc LINE L1 1514 1660 -4736 572 265 61 20 chr1 205068532 205068728 -77124936 + L2 LINE L2 1688 1891 -1423 976 196 114 9 chr1 205068734 205068954 -77124710 - MIR SINE MIR -1 261 19 1323 289 251 12 chr1 205068965 205070098 -77123566 + L2 LINE L2 1907 3309 -4 361 124 0 135 chr1 205070642 205070731 -77122933 + MER116 DNA Mariner 3 79 -1 317 318 98 0 chr1 205070901 205071074 -77122590 + MIR SINE MIR 73 262 0 2355 82 0 0 chr1 205071435 205071728 -77121936 - AluY SINE Alu -18 293 1 205 325 83 33 chr1 205072505 205072614 -77121050 + MIR3 SINE MIR 2 119 -89 1730 182 3 10 chr1 205072614 205072921 -77120743 - AluJo SINE Alu -7 305 1 399 287 20 70 chr1 205072959 205073203 -77120461 - L3 LINE CR1 -206 1371 1140 1495 201 0 11 chr1 205073236 205073519 -77120145 - AluJo SINE Alu -20 292 13 2271 107 3 0 chr1 205073692 205073990 -77119674 + AluSx SINE Alu 1 299 -13 244 395 53 9 chr1 205074034 205074148 -77119516 - L3 LINE CR1 -414 1163 1045 2303 88 0 26 chr1 205077157 205077463 -77116201 + AluSg SINE Alu 1 298 -12 601 167 132 18 chr1 205081456 205081570 -77112094 - FLAM_A SINE Alu -6 127 1 811 108 0 31 chr1 205082512 205082642 -77111022 - AluJb SINE Alu -11 301 176 213 371 19 9 chr1 205083194 205083299 -77110365 + MIR3 SINE MIR 63 168 -40 209 150 25 0 chr1 205083381 205083421 -77110243 + MIR SINE MIR 112 152 -110 1204 98 0 0 chr1 205083429 205083619 -77110045 - AluYa5 SINE Alu 0 308 119 1340 101 316 0 chr1 205083627 205083855 -77109809 - AluSx SINE Alu -2 300 1 823 133 0 30 chr1 205083857 205083992 -77109672 - AluJo/FLAM SINE Alu -171 131 1 2206 111 0 84 chr1 205084533 205084901 -77108763 + MER1B DNA MER1_type 1 337 0 231 316 95 60 chr1 205087012 205087180 -77106484 + MIR SINE MIR 33 206 -56 2006 154 20 14 chr1 205087689 205088047 -77105617 - MLT1A1 LTR MaLR 0 365 6 233 250 40 0 chr1 205089822 205089898 -77103766 - MIR SINE MIR -12 250 172 1888 121 26 12 chr1 205089908 205090298 -77103366 - LTR7 LTR ERV1 -2 448 1 321 351 20 20 chr1 205090302 205090453 -77103211 - MIR SINE MIR -110 152 2 4061 195 74 10 chr1 205091541 205092351 -77101313 - MER21B LTR ERV1 -1 862 1 227 31 31 0 chr1 205093761 205093793 -77099871 + (TAA)n Simple_repeat Simple_repeat 1 33 0 535 269 123 4 chr1 205093796 205094023 -77099641 - MIR SINE MIR -8 254 1 183 67 67 0 chr1 205094085 205094115 -77099549 - L2 LINE L2 -86 3227 3196 248 196 0 0 chr1 205094852 205094903 -77098761 - MIR3 SINE MIR -54 154 104 189 0 0 0 chr1 205095358 205095379 -77098285 + (A)n Simple_repeat Simple_repeat 1 21 0 407 337 80 34 chr1 205097606 205097870 -77095794 - L2 LINE L2 0 3272 2997 714 296 78 0 chr1 205097929 205098135 -77095529 + MIR SINE MIR 20 241 -21 265 226 131 12 chr1 205098314 205098398 -77095266 - L2 LINE L2 -995 2319 2226 2265 85 0 0 chr1 205099019 205099314 -77094350 + AluY SINE Alu 1 295 -16 526 263 39 13 chr1 205151040 205151196 -77042468 - MIR SINE MIR -82 180 21 278 77 115 0 chr1 205151281 205151333 -77042331 - AluSx SINE Alu -4 298 241 1533 90 0 5 chr1 205151334 205151534 -77042130 - AluSx SINE Alu -113 199 1 264 321 28 0 chr1 205153161 205153270 -77040394 + MIR SINE MIR 25 136 -72 280 174 0 174 chr1 205153408 205153517 -77040147 - MER103 DNA DNA -74 92 3 2289 74 10 13 chr1 205154252 205154561 -77039103 + AluY SINE Alu 3 310 -1 421 198 19 0 chr1 205155161 205155267 -77038397 + CT-rich Low_complexity Low_complexity 1 108 0 1524 344 57 11 chr1 205155282 205156015 -77037649 - HERVL LTR ERVL -1008 4756 3990 2735 339 54 13 chr1 205156043 205157472 -77036192 - HERVL LTR ERVL -1593 3892 2377 234 319 18 26 chr1 205158161 205158274 -77035390 - MIR3 SINE MIR -9 199 88 1013 140 53 0 chr1 205158349 205158520 -77035144 - AluY SINE Alu -13 298 119 1340 101 316 0 chr1 205158528 205158756 -77034908 - AluSx SINE Alu -2 300 1 823 133 0 30 chr1 205158758 205158893 -77034771 - AluJo/FLAM SINE Alu -171 131 1 2206 111 0 84 chr1 205159434 205159802 -77033862 + MER1B DNA MER1_type 1 337 0 231 316 95 60 chr1 205161915 205162083 -77031581 + MIR SINE MIR 33 206 -56 2006 154 20 14 chr1 205162592 205162950 -77030714 - MLT1A1 LTR MaLR 0 365 6 233 250 40 0 chr1 205164727 205164803 -77028861 - MIR SINE MIR -12 250 172 1888 121 26 12 chr1 205164813 205165203 -77028461 - LTR7 LTR ERV1 -2 448 1 335 344 20 20 chr1 205165207 205165358 -77028306 - MIR SINE MIR -110 152 2 4061 195 74 10 chr1 205166491 205167301 -77026363 - MER21B LTR ERV1 -1 862 1 227 31 31 0 chr1 205168711 205168743 -77024921 + (TAA)n Simple_repeat Simple_repeat 1 33 0 535 269 123 4 chr1 205168746 205168973 -77024691 - MIR SINE MIR -8 254 1 183 67 67 0 chr1 205169035 205169065 -77024599 - L2 LINE L2 -86 3227 3196 248 196 0 0 chr1 205169802 205169853 -77023811 - MIR3 SINE MIR -54 154 104 189 0 0 0 chr1 205170308 205170329 -77023335 + (A)n Simple_repeat Simple_repeat 1 21 0 407 337 80 34 chr1 205172559 205172823 -77020841 - L2 LINE L2 0 3272 2997 714 296 78 0 chr1 205172882 205173088 -77020576 + MIR SINE MIR 20 241 -21 265 226 131 12 chr1 205173267 205173351 -77020313 - L2 LINE L2 -995 2319 2226 2265 85 0 0 chr1 205173972 205174267 -77019397 + AluY SINE Alu 1 295 -16 1435 167 49 8 chr1 205176145 205176409 -77017255 + ORSL DNA AcHobo 1 275 0 1804 146 3 46 chr1 205176551 205176874 -77016790 - AluSx SINE Alu -3 309 1 2483 61 10 0 chr1 205177807 205178117 -77015547 + AluSp SINE Alu 1 313 0 1763 171 0 3 chr1 205178141 205178445 -77015219 + AluJb SINE Alu 1 303 -9 2227 96 7 0 chr1 205179036 205179338 -77014326 + AluSp SINE Alu 1 304 -9 230 283 59 91 chr1 205179747 205179934 -77013730 + MIR SINE MIR 25 205 -57 25 31 0 0 chr1 205180390 205180422 -77013242 + AT_rich Low_complexity Low_complexity 1 32 0 2644 260 47 23 chr1 205180947 205181888 -77011776 + L1ME1 LINE L1 5137 6099 -67 1878 208 42 23 chr1 205182962 205183390 -77010274 + MER63B DNA MER1_type 1 436 0 232 283 0 0 chr1 205185233 205185286 -77008378 - L2 LINE L2 0 3313 3261 298 365 186 10 chr1 205185420 205185710 -77007954 + L2 LINE L2 2932 3272 0 44090 32 21 2 chr1 205186081 205192116 -77001548 - L1PA3 LINE L1 0 6155 1 25 31 0 0 chr1 205192279 205192311 -77001353 + AT_rich Low_complexity Low_complexity 1 32 0 197 269 135 19 chr1 205192729 205192833 -77000831 + L2 LINE L2 3192 3307 -6 848 78 0 0 chr1 205193363 205193466 -77000198 - AluSq/x SINE Alu -209 103 1 2320 99 0 0 chr1 205193679 205193972 -76999692 + AluSq SINE Alu 1 293 -20 2674 246 203 28 chr1 205194120 205194499 -76999165 + L1M4 LINE L1 2439 2750 -3396 1981 163 3 0 chr1 205194499 205194800 -76998864 + AluJb SINE Alu 1 302 -10 2674 246 203 28 chr1 205194800 205195625 -76998039 + L1M4 LINE L1 2750 3429 -2717 2247 122 0 0 chr1 205195625 205195928 -76997736 + AluSx SINE Alu 1 303 -9 2674 246 203 28 chr1 205195928 205196421 -76997243 + L1M4 LINE L1 3429 4434 -1712 1231 269 39 28 chr1 205196438 205196873 -76996791 + L1M4 LINE L1 4625 5064 -1082 273 256 124 22 chr1 205196859 205196996 -76996668 + L1ME3A LINE L1 6004 6154 -16 * 515 261 35 0 chr1 205197050 205197192 -76996472 + L1MEc LINE L1 1514 1660 -4736 565 265 61 20 chr1 205197538 205197734 -76995930 + L2 LINE L2 1688 1891 -1423 967 188 128 9 chr1 205197742 205197960 -76995704 - MIR SINE MIR 0 262 19 1337 287 251 12 chr1 205197971 205199104 -76994560 + L2 LINE L2 1907 3309 -4 393 124 0 135 chr1 205199648 205199737 -76993927 + MER116 DNA Mariner 3 79 -1 304 318 98 0 chr1 205199907 205200080 -76993584 + MIR SINE MIR 73 262 0 2374 82 0 0 chr1 205200441 205200734 -76992930 - AluY SINE Alu -18 293 1 197 291 136 48 chr1 205201528 205201620 -76992044 + MIR SINE MIR 16 119 -89 1746 182 3 10 chr1 205201620 205201927 -76991737 - AluJo SINE Alu -7 305 1 390 287 20 70 chr1 205201965 205202209 -76991455 - L3 LINE CR1 -206 1371 1140 1482 193 0 11 chr1 205202242 205202516 -76991148 - AluJo SINE Alu -20 292 22 2292 107 3 0 chr1 205202698 205202996 -76990668 + AluSx SINE Alu 1 299 -13 236 395 53 9 chr1 205203040 205203154 -76990510 - L3 LINE CR1 -414 1163 1045 2315 88 0 26 chr1 205206104 205206410 -76987254 + AluSg SINE Alu 1 298 -12 626 167 132 18 chr1 205210403 205210517 -76983147 - FLAM_A SINE Alu -6 127 1 26 0 0 0 chr1 205211049 205211075 -76982589 + AT_rich Low_complexity Low_complexity 1 26 0 191 213 0 21 chr1 205211842 205211889 -76981775 + L2 LINE L2 3263 3308 -5 21 0 0 0 chr1 205212330 205212351 -76981313 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr1 205212396 205212427 -76981237 + (T)n Simple_repeat Simple_repeat 1 31 0 1883 61 0 9 chr1 205212436 205212667 -76980997 - AluY SINE Alu -77 234 6 270 0 0 0 chr1 205212840 205212870 -76980794 + (TC)n Simple_repeat Simple_repeat 1 30 0 294 257 83 72 chr1 205213186 205213272 -76980392 - MIR3 SINE MIR -25 237 153 1877 140 0 3 chr1 205213272 205213557 -76980107 - AluJb SINE Alu -23 289 6 294 257 83 72 chr1 205213557 205213654 -76980010 - MIR3 SINE MIR -109 153 56 505 232 137 36 chr1 205213920 205214088 -76979576 - MIR SINE MIR -15 247 63 346 196 72 31 chr1 205214113 205214210 -76979454 + MIR SINE MIR 106 206 -56 539 273 192 5 chr1 205214611 205214809 -76978855 + MIR SINE MIR 8 242 -20 255 284 179 0 chr1 205214799 205214894 -76978770 - L2 LINE L2 -22 3291 3180 * 276 331 92 32 chr1 205215223 205215474 -76978190 - L2 LINE L2 -682 2632 2367 256 326 71 20 chr1 205215479 205215577 -76978087 + L2 LINE L2 3121 3223 -49 204 40 0 0 chr1 205215739 205215764 -76977900 + (TG)n Simple_repeat Simple_repeat 2 26 0 198 103 0 0 chr1 205215882 205215911 -76977753 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 221 163 23 0 chr1 205215971 205216014 -76977650 + C-rich Low_complexity Low_complexity 3 46 0 586 201 63 69 chr1 205216044 205216218 -76977446 + L1ME2 LINE L1 5963 6135 -29 42 0 0 0 chr1 205216617 205216659 -76977005 + AT_rich Low_complexity Low_complexity 1 42 0 2449 75 0 0 chr1 205216661 205216955 -76976709 + AluSc SINE Alu 1 294 -15 4988 125 44 30 chr1 205216955 205217826 -76975838 - L1MB2 LINE L1 -4 6167 5285 322 294 183 0 chr1 205218147 205218344 -76975320 + L1ME4a LINE L1 5737 5969 -152 1195 157 15 20 chr1 205218521 205218749 -76974915 + AluJb SINE Alu 86 312 0 198 158 184 0 chr1 205218999 205219037 -76974627 - L2 LINE L2 -16 3297 3253 196 247 24 94 chr1 205219009 205219040 -76974624 - MIR SINE MIR -27 235 203 * 2202 125 63 29 chr1 205219040 205219391 -76974273 + THE1B LTR MaLR 2 364 0 196 247 24 94 chr1 205219391 205219444 -76974220 - MIR SINE MIR -59 203 157 2479 70 0 0 chr1 205219509 205219808 -76973856 - AluY SINE Alu -12 299 1 601 273 44 11 chr1 205219936 205220119 -76973545 - MIR SINE MIR -71 191 3 369 58 0 0 chr1 205220202 205220254 -76973410 + (CA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr1 205220296 205220320 -76973344 + AT_rich Low_complexity Low_complexity 1 24 0 284 158 18 0 chr1 205220888 205220945 -76972719 + CT-rich Low_complexity Low_complexity 3 60 0 1604 136 23 11 chr1 205220945 205221209 -76972455 - AluJb SINE Alu -45 267 1 198 0 0 0 chr1 205221441 205221463 -76972201 + (GA)n Simple_repeat Simple_repeat 1 22 0 1393 136 125 0 chr1 205223990 205224262 -76969402 - Charlie5 DNA MER1_type 0 2620 2315 1268 136 0 0 chr1 205224265 205224441 -76969223 - AluSg/x SINE Alu -18 292 117 1353 44 0 6 chr1 205224453 205224611 -76969053 - AluY SINE Alu -154 157 1 265 167 17 33 chr1 205224612 205224672 -76968992 - Charlie5 DNA MER1_type -320 2292 2234 358 154 167 0 chr1 205224689 205224767 -76968897 - Charlie5 DNA MER1_type -2521 91 1 517 259 88 29 chr1 205225392 205225562 -76968102 - MIR SINE MIR -49 213 34 256 311 81 19 chr1 205225634 205225795 -76967869 - L2 LINE L2 -560 2754 2584 342 250 106 0 chr1 205225878 205225982 -76967682 - MIR SINE MIR -91 171 57 31 26 0 0 chr1 205225982 205226020 -76967644 + AT_rich Low_complexity Low_complexity 1 38 0 2131 127 6 19 chr1 205226073 205226389 -76967275 - AluSx SINE Alu 0 312 1 280 353 53 0 chr1 205226516 205226666 -76966998 - L1ME LINE L1 -401 5720 5563 2369 45 0 24 chr1 205227073 205227388 -76966276 - AluY SINE Alu 0 308 1 1945 86 60 4 chr1 205227395 205227687 -76965977 - AluSx SINE Alu 0 308 2 216 268 0 54 chr1 205227794 205227850 -76965814 + L2 LINE L2 3122 3174 -98 2390 80 3 3 chr1 205228534 205228833 -76964831 + AluSg SINE Alu 1 299 -11 920 288 108 25 chr1 205229062 205229469 -76964195 - L2 LINE L2 -22 3291 2851 2100 104 4 4 chr1 205229910 205230232 -76963432 - AluSg SINE Alu 0 322 1 397 200 0 0 chr1 205230676 205230751 -76962913 + MER116 DNA Mariner 6 80 0 2506 90 0 0 chr1 205231140 205231450 -76962214 - AluSx SINE Alu -2 310 1 318 295 50 29 chr1 205231459 205231598 -76962066 - L2 LINE L2 -14 3299 3158 499 237 67 80 chr1 205231797 205231929 -76961735 - MIR SINE MIR -14 248 119 2353 99 0 3 chr1 205231929 205232232 -76961432 + AluSp SINE Alu 1 302 -11 499 237 67 80 chr1 205232232 205232323 -76961341 - MIR SINE MIR -143 119 28 513 259 124 8 chr1 205232895 205233161 -76960503 - L2 LINE L2 -44 3269 2973 237 244 0 0 chr1 205234207 205234252 -76959412 - L2 LINE L2 -4 3268 3224 1302 291 56 26 chr1 205234624 205235125 -76958539 - LTR33 LTR ERVL -4 517 2 208 284 0 45 chr1 205235575 205235642 -76958022 + L2 LINE L2 3200 3263 -50 2326 120 68 0 chr1 205235850 205236201 -76957463 + THE1C LTR MaLR 1 375 0 661 231 59 27 chr1 205236539 205236606 -76957058 - L1ME3A LINE L1 -271 5899 5836 2264 108 10 7 chr1 205236606 205236913 -76956751 - AluSg SINE Alu -2 308 1 661 231 59 27 chr1 205236913 205237066 -76956598 - L1ME3A LINE L1 -334 5836 5672 873 165 0 0 chr1 205237174 205237307 -76956357 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr1 205237564 205237587 -76956077 + AT_rich Low_complexity Low_complexity 1 23 0 280 91 36 18 chr1 205237612 205237667 -76955997 - L1M4 LINE L1 -2208 3938 3883 2283 107 0 3 chr1 205237981 205238279 -76955385 + AluSg SINE Alu 1 297 -13 1653 170 35 40 chr1 205239376 205239752 -76953912 - MLT1A2 LTR MaLR 0 374 1 261 268 27 36 chr1 205239968 205240080 -76953584 + MER5A DNA MER1_type 21 131 -58 301 308 0 43 chr1 205240867 205240984 -76952680 + L2 LINE L2 2910 3021 -251 593 224 63 7 chr1 205241581 205241724 -76951940 + MIR SINE MIR 34 184 -78 2430 87 0 0 chr1 205242114 205242425 -76951239 + AluY SINE Alu 1 311 0 503 123 4 1 chr1 205242806 205243075 -76950589 + AluSx SINE Alu 1 303 -6 2743 164 36 0 chr1 205243076 205243544 -76950120 - MER41C LTR ERV1 -68 486 2 1114 168 5 10 chr1 205245443 205245639 -76948025 + L1PB3 LINE L1 5960 6154 0 246 284 15 15 chr1 205246759 205246826 -76946838 + MIR SINE MIR 17 83 -179 233 231 19 0 chr1 205246842 205246894 -76946770 - MLT1K LTR MaLR -20 568 516 659 319 121 21 chr1 205247176 205247599 -76946065 - LTR33 LTR ERVL -13 508 44 1011 128 28 22 chr1 205247904 205248083 -76945581 - MLT1C LTR MaLR -287 180 1 2255 115 0 10 chr1 205248603 205248915 -76944749 + AluSx SINE Alu 1 309 -3 505 258 68 37 chr1 205249247 205249437 -76944227 - MER91A DNA MER1_type 0 196 1 355 167 0 0 chr1 205250474 205250528 -76943136 - Tigger7 DNA MER2_type -1778 709 656 303 114 0 0 chr1 205250532 205250576 -76943088 - Tigger7 DNA MER2_type -295 44 1 2525 44 3 3 chr1 205251840 205252134 -76941530 - AluY SINE Alu -17 294 1 21 36 0 0 chr1 205252619 205252647 -76941017 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 205257580 205257602 -76936062 + AT_rich Low_complexity Low_complexity 1 22 0 6022 153 71 21 chr1 205257900 205259061 -76934603 + L1MC1 LINE L1 19 1237 -5189 2482 186 32 42 chr1 205259057 205259682 -76933982 + L1MC1 LINE L1 5015 5645 -968 * 2099 141 3 0 chr1 205259682 205259980 -76933684 + AluSx SINE Alu 1 299 -13 2482 186 32 42 chr1 205259980 205260305 -76933359 + L1MC1 LINE L1 5645 5972 -641 1247 83 0 6 chr1 205260329 205260477 -76933187 - AluSg/x SINE Alu -29 283 135 3702 136 33 9 chr1 205260477 205261108 -76932556 + L1MC1 LINE L1 5962 6607 -6 327 162 145 26 chr1 205262838 205262955 -76930709 - MIR SINE MIR -35 227 97 28 0 0 0 chr1 205263202 205263230 -76930434 + AT_rich Low_complexity Low_complexity 1 28 0 2722 52 0 0 chr1 205263540 205263848 -76929816 + AluY SINE Alu 1 308 -3 2223 114 0 10 chr1 205264021 205264320 -76929344 + AluSx SINE Alu 1 296 -16 660 215 140 87 chr1 205264647 205264968 -76928696 - MER46C DNA MER2_type 0 338 1 340 237 59 53 chr1 205265035 205265187 -76928477 + MIR SINE MIR 60 212 -50 1373 197 69 7 chr1 205265961 205266266 -76927398 - MER33 DNA MER1_type 0 324 1 1000 141 6 25 chr1 205266307 205266470 -76927194 - FRAM SINE Alu -16 160 1 232 300 0 14 chr1 205266470 205266540 -76927124 - HAL1 LINE L1 -2401 106 38 191 289 52 21 chr1 205266702 205266799 -76926865 + L2 LINE L2 2722 2821 -493 2281 97 3 16 chr1 205268886 205269196 -76924468 + AluSx SINE Alu 1 306 -6 330 190 0 0 chr1 205269413 205269471 -76924193 - L1MDa LINE L1 -5900 640 583 298 145 12 12 chr1 205269804 205269887 -76923777 + (TA)n Simple_repeat Simple_repeat 1 83 0 411 347 50 5 chr1 205271569 205271768 -76921896 - MIR SINE MIR -6 256 49 308 232 202 10 chr1 205272292 205272391 -76921273 - L2 LINE L2 0 3313 3196 2275 145 40 26 chr1 205272432 205272881 -76920783 + L1MA4 LINE L1 5850 6300 0 2299 99 7 0 chr1 205272882 205273174 -76920490 - AluSc SINE Alu -15 294 1 22 0 0 0 chr1 205273411 205273433 -76920231 + AT_rich Low_complexity Low_complexity 1 22 0 782 157 0 41 chr1 205273487 205273634 -76920030 + AluJo SINE Alu 1 141 -171 629 242 95 16 chr1 205273752 205273942 -76919722 + L1ME3A LINE L1 5956 6160 -10 600 269 82 15 chr1 205273966 205274234 -76919430 + L1ME LINE L1 5523 5808 -313 1818 179 0 10 chr1 205274488 205274785 -76918879 - AluJb SINE Alu -17 295 2 230 340 0 0 chr1 205274849 205274952 -76918712 + L1ME LINE L1 5689 5791 -330 258 246 111 48 chr1 205275031 205275157 -76918507 + MIR SINE MIR 119 252 -10 420 141 154 0 chr1 205275208 205275286 -76918378 + Charlie5 DNA MER1_type 12 101 -2511 * 1663 156 85 16 chr1 205275284 205275650 -76918014 + Charlie5 DNA MER1_type 2233 2623 0 2093 133 17 0 chr1 205276292 205276594 -76917070 - AluSx SINE Alu -5 307 1 315 282 58 0 chr1 205277110 205277213 -76916451 - MIR SINE MIR -64 144 36 2411 107 25 8 chr1 205278176 205278542 -76915122 - THE1C LTR MaLR -3 372 1 1260 176 153 15 chr1 205279811 205280072 -76913592 + AluSg1 SINE Alu 1 297 -12 1298 144 64 68 chr1 205280118 205280368 -76913296 - AluJb SINE Alu -63 249 1 277 307 109 0 chr1 205281211 205281312 -76912352 + L2 LINE L2 3200 3311 -2 548 184 129 14 chr1 205281977 205282124 -76911540 - MIR SINE MIR -29 233 70 3792 179 29 20 chr1 205282125 205282825 -76910839 + MER21B LTR ERV1 1 706 -157 268 282 14 14 chr1 205282903 205282974 -76910690 - MIR SINE MIR -190 72 2 2326 109 3 0 chr1 205283975 205284277 -76909387 - AluSq SINE Alu -10 303 1 1958 146 24 0 chr1 205285023 205285358 -76908306 + MER2 DNA MER2_type 2 344 0 3044 175 73 129 chr1 205285599 205286209 -76907455 - Charlie1a DNA MER1_type -1317 1444 934 1142 136 113 5 chr1 205286209 205286422 -76907242 - MER46A DNA MER2_type 0 236 1 3044 175 73 129 chr1 205286422 205287017 -76906647 - Charlie1a DNA MER1_type -1827 934 307 2873 194 140 17 chr1 205287019 205287099 -76906565 + L1ME1 LINE L1 5237 5306 -860 2224 126 0 10 chr1 205287099 205287409 -76906255 + AluSx SINE Alu 1 307 -5 2873 194 140 17 chr1 205287409 205288146 -76905518 + L1ME1 LINE L1 5306 6154 -12 1240 221 13 85 chr1 205288149 205288223 -76905441 - Charlie1a DNA MER1_type -2411 350 272 2175 133 0 0 chr1 205288223 205288516 -76905148 - AluSx SINE Alu -19 293 1 1240 221 13 85 chr1 205288516 205288816 -76904848 - Charlie1a DNA MER1_type -2489 272 3 2377 109 3 0 chr1 205290584 205290888 -76902776 - AluSp SINE Alu -8 305 1 1597 164 16 4 chr1 205291236 205291492 -76902172 - AluJo SINE Alu -13 299 41 774 230 121 33 chr1 205291552 205292030 -76901634 - MLT1G LTR MaLR 0 590 56 2420 94 7 0 chr1 205292030 205292338 -76901326 + AluSg SINE Alu 1 310 0 774 230 121 33 chr1 205292338 205292400 -76901264 - MLT1G LTR MaLR -534 56 1 525 108 0 0 chr1 205292788 205292862 -76900802 + AluSg/x SINE Alu 215 288 -22 304 240 60 50 chr1 205292941 205293041 -76900623 - L2 LINE L2 -5 3308 3208 1552 167 86 0 chr1 205293489 205293746 -76899918 + AluJo SINE Alu 2 280 -32 201 147 0 0 chr1 205293748 205293782 -76899882 + (CA)n Simple_repeat Simple_repeat 2 35 0 2671 47 0 25 chr1 205293991 205294310 -76899354 - AluY SINE Alu 0 311 1 1536 289 30 71 chr1 205294498 205295219 -76898445 + MER115 DNA AcHobo 2 693 0 4342 113 105 134 chr1 205295697 205297175 -76896489 + pTR5 LTR ERV1 741 2438 0 2241 125 0 0 chr1 205297366 205297661 -76896003 + AluSg SINE Alu 1 295 -15 2384 102 0 13 chr1 205297663 205297977 -76895687 + AluSg SINE Alu 1 310 0 2344 97 0 7 chr1 205297983 205298293 -76895371 + AluSg1 SINE Alu 1 308 -1 2249 112 0 3 chr1 205298301 205298595 -76895069 + AluSg SINE Alu 1 293 -17 1764 173 42 0 chr1 205300757 205301040 -76892624 + AluJb SINE Alu 1 295 -17 216 111 0 0 chr1 205301297 205301333 -76892331 + (A)n Simple_repeat Simple_repeat 1 36 0 699 157 0 15 chr1 205302693 205302827 -76890837 - Charlie1 DNA MER1_type -1 2760 2629 2451 81 7 3 chr1 205302837 205303144 -76890520 + AluSx SINE Alu 5 312 0 2135 142 0 6 chr1 205303150 205303461 -76890203 + AluJo SINE Alu 3 311 -1 531 250 9 0 chr1 205304285 205304397 -76889267 - L2 LINE L2 -4 3309 3197 2335 103 0 31 chr1 205304617 205304938 -76888726 + AluSq SINE Alu 1 311 -2 301 304 181 7 chr1 205305623 205305761 -76887903 - L3 LINE CR1 -11 1566 1405 2216 100 4 4 chr1 205306132 205306459 -76887205 + AluSc SINE Alu 1 327 0 2169 125 3 3 chr1 205306888 205307184 -76886480 + AluSx SINE Alu 3 298 -14 2453 83 3 0 chr1 205307778 205308080 -76885584 + AluSp SINE Alu 2 304 -9 200 279 0 0 chr1 205308354 205308422 -76885242 + T-rich Low_complexity Low_complexity 1 68 0 1191 234 49 76 chr1 205309428 205309977 -76883687 - MLT1G1 LTR MaLR -18 537 1 1914 183 79 23 chr1 205310011 205310453 -76883211 - MLT1C LTR MaLR 0 467 1 696 295 162 35 chr1 205310660 205311597 -76882067 + L2 LINE L2 2234 3310 -3 2171 122 7 0 chr1 205311597 205311892 -76881772 + AluSx SINE Alu 1 297 -15 342 143 12 36 chr1 205311999 205312083 -76881581 + CT-rich Low_complexity Low_complexity 3 84 0 1029 135 49 0 chr1 205312090 205312253 -76881411 - AluJb SINE Alu -6 306 136 349 372 109 26 chr1 205312974 205313321 -76880343 + L2 LINE L2 2564 2939 -375 2402 94 7 0 chr1 205315962 205316271 -76877393 + AluSq SINE Alu 1 311 -2 180 176 0 0 chr1 205316731 205316765 -76876899 + G-rich Low_complexity Low_complexity 3 36 0 898 242 158 33 chr1 205316931 205317684 -76875980 - L2 LINE L2 -2 3311 2469 326 287 47 40 chr1 205317829 205317979 -76875685 + MIR SINE MIR 64 214 -48 180 0 0 0 chr1 205321344 205321364 -76872300 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2107 123 30 3 chr1 205323154 205323455 -76870209 - AluSx SINE Alu -1 311 3 291 300 28 66 chr1 205324963 205325202 -76868462 - MIR SINE MIR -34 228 4 410 253 229 0 chr1 205325351 205325521 -76868143 - MER112 DNA MER1_type -6 254 46 449 273 77 7 chr1 205327235 205327378 -76866286 + MIR SINE MIR 39 191 -71 565 235 100 12 chr1 205328261 205328431 -76865233 + MIR SINE MIR 62 246 -16 2336 113 26 0 chr1 205328701 205329045 -76864619 - THE1A LTR MaLR 0 355 3 11493 87 4 3 chr1 205329047 205330625 -76863039 - THE1A-int LTR MaLR 0 1580 1 2491 87 26 3 chr1 205330625 205330972 -76862692 - THE1A LTR MaLR 0 355 1 287 227 23 11 chr1 205331460 205331600 -76862064 - MER5A DNA MER1_type 0 189 3 1216 134 6 0 chr1 205333393 205333564 -76860100 + AluSx SINE Alu 12 183 -129 399 200 0 0 chr1 205383564 205383629 -76810035 - AluJ/FLAM SINE Alu -236 66 2 227 340 0 0 chr1 205383693 205383796 -76809868 + L1ME LINE L1 5689 5791 -330 321 239 108 54 chr1 205383871 205384001 -76809663 + MIR SINE MIR 116 252 -10 410 165 132 11 chr1 205384039 205384130 -76809534 + MER3 DNA MER1_type 47 148 -61 * 1647 156 85 16 chr1 205384128 205384494 -76809170 + MER3 DNA MER1_type 2233 2623 0 2093 133 17 0 chr1 205386036 205386338 -76807326 - AluSx SINE Alu -5 307 1 315 282 58 0 chr1 205386854 205386957 -76806707 - MIR SINE MIR -64 144 36 2411 107 25 8 chr1 205387920 205388286 -76805378 - THE1C LTR MaLR -3 372 1 1260 176 153 15 chr1 205389555 205389816 -76803848 + AluSg1 SINE Alu 1 297 -12 843 137 8 0 chr1 205389984 205390108 -76803556 - AluJb SINE Alu -187 125 1 277 307 109 0 chr1 205390951 205391052 -76802612 + L2 LINE L2 3200 3311 -2 548 184 129 14 chr1 205391717 205391864 -76801800 - MIR SINE MIR -29 233 70 3669 184 29 21 chr1 205391865 205392566 -76801098 + MER21B LTR ERV1 1 706 -157 268 282 14 14 chr1 205392644 205392715 -76800949 - MIR SINE MIR -190 72 2 2286 109 3 0 chr1 205393716 205394018 -76799646 - AluSq SINE Alu -10 303 1 2081 146 24 0 chr1 205394764 205395099 -76798565 + MER2 DNA MER2_type 2 344 0 3323 172 74 130 chr1 205395344 205395950 -76797714 - Charlie1a DNA MER1_type -1321 1440 932 1220 132 113 5 chr1 205395950 205396163 -76797501 - MER46A DNA MER2_type 0 236 1 3323 172 74 130 chr1 205396163 205396749 -76796915 - Charlie1a DNA MER1_type -1829 932 315 225 165 121 55 chr1 205396749 205396840 -76796824 + L1ME1 LINE L1 5226 5322 -824 1879 135 10 10 chr1 205396840 205397129 -76796535 + AluSx SINE Alu 1 289 -23 495 171 0 11 chr1 205397322 205397410 -76796254 + AluS SINE Alu 220 306 -3 2980 196 132 11 chr1 205397410 205398145 -76795519 + L1ME1 LINE L1 5331 6154 -12 1315 219 13 85 chr1 205398148 205398222 -76795442 - Charlie1a DNA MER1_type -2411 350 272 2148 133 0 0 chr1 205398222 205398515 -76795149 - AluSx SINE Alu -19 293 1 1315 219 13 85 chr1 205398515 205398815 -76794849 - Charlie1a DNA MER1_type -2489 272 3 2350 109 3 0 chr1 205400583 205400887 -76792777 - AluSp SINE Alu -8 305 1 1576 149 17 4 chr1 205401250 205401491 -76792173 - AluJo SINE Alu -28 284 41 815 248 121 50 chr1 205401551 205402029 -76791635 - MLT1H1 LTR MaLR 0 555 57 2391 94 7 0 chr1 205402029 205402337 -76791327 + AluSg SINE Alu 1 310 0 815 248 121 50 chr1 205402337 205402399 -76791265 - MLT1H1 LTR MaLR -498 57 1 212 319 18 26 chr1 205403394 205403507 -76790157 - MIR3 SINE MIR -9 199 88 2073 115 28 3 chr1 205403584 205403872 -76789792 - AluSg SINE Alu -15 295 1 197 268 0 54 chr1 205404578 205404634 -76789030 - L2 LINE L2 -98 3174 3122 1975 86 60 4 chr1 205404741 205405033 -76788631 + AluSx SINE Alu 2 308 0 2401 45 0 24 chr1 205405040 205405355 -76788309 + AluY SINE Alu 1 308 0 278 353 53 0 chr1 205405761 205405911 -76787753 + L1ME LINE L1 5563 5720 -401 2143 127 6 19 chr1 205406038 205406354 -76787310 + AluSx SINE Alu 1 312 0 31 26 0 0 chr1 205406407 205406445 -76787219 + AT_rich Low_complexity Low_complexity 1 38 0 309 250 106 0 chr1 205406445 205406549 -76787115 + MIR SINE MIR 57 171 -91 221 326 68 15 chr1 205406661 205406793 -76786871 + L2 LINE L2 2616 2754 -560 466 259 88 29 chr1 205406865 205407035 -76786629 + MIR SINE MIR 34 213 -49 357 154 167 0 chr1 205407660 205407738 -76785926 + Charlie5 DNA MER1_type 1 91 -2521 259 167 17 33 chr1 205407755 205407815 -76785849 + Charlie5 DNA MER1_type 2234 2292 -320 1369 44 0 6 chr1 205407816 205407974 -76785690 + AluY SINE Alu 1 157 -154 1274 136 0 0 chr1 205407986 205408162 -76785502 + AluSg/x SINE Alu 117 292 -18 1364 136 125 0 chr1 205408165 205408437 -76785227 + Charlie5 DNA MER1_type 2315 2620 0 427 262 55 79 chr1 205409168 205409237 -76784427 + MIR SINE MIR 52 121 -141 2378 99 0 3 chr1 205409237 205409540 -76784124 - AluSp SINE Alu -11 302 1 427 262 55 79 chr1 205409540 205409672 -76783992 + MIR SINE MIR 121 248 -14 279 295 50 29 chr1 205409871 205410010 -76783654 + L2 LINE L2 3158 3299 -14 2522 90 0 0 chr1 205410019 205410329 -76783335 + AluSx SINE Alu 1 310 -2 389 200 0 0 chr1 205410718 205410793 -76782871 - MER116 DNA Mariner 0 80 6 2126 104 4 4 chr1 205411237 205411559 -76782105 + AluSg SINE Alu 1 322 0 811 286 111 25 chr1 205412000 205412406 -76781258 + L2 LINE L2 2851 3291 -22 338 128 0 12 chr1 205412635 205412715 -76780949 - AluSp/q SINE Alu -1 302 249 645 135 0 0 chr1 205412828 205412924 -76780740 + AluSg/x SINE Alu 195 290 -22 287 240 60 50 chr1 205413003 205413103 -76780561 - L2 LINE L2 -5 3308 3208 1552 163 86 0 chr1 205413551 205413808 -76779856 + AluJo SINE Alu 2 280 -32 201 147 0 0 chr1 205413810 205413844 -76779820 + (CA)n Simple_repeat Simple_repeat 2 35 0 2649 47 0 25 chr1 205414053 205414372 -76779292 - AluY SINE Alu 0 311 1 1572 283 30 71 chr1 205414560 205415281 -76778383 + MER115 DNA AcHobo 2 693 0 2539 142 109 140 chr1 205415760 205417399 -76776265 + pTR5 LTR ERV1 741 2438 0 2214 125 0 0 chr1 205417590 205417885 -76775779 + AluSg SINE Alu 1 295 -15 2318 108 0 13 chr1 205417887 205418201 -76775463 + AluSg SINE Alu 1 310 0 2346 93 0 7 chr1 205418207 205418517 -76775147 + AluSg1 SINE Alu 1 308 -1 2222 112 0 3 chr1 205418525 205418819 -76774845 + AluSg SINE Alu 1 293 -17 1737 173 42 0 chr1 205420981 205421264 -76772400 + AluJb SINE Alu 1 295 -17 216 111 0 0 chr1 205421521 205421557 -76772107 + (A)n Simple_repeat Simple_repeat 1 36 0 742 157 0 15 chr1 205423031 205423165 -76770499 - Charlie1 DNA MER1_type -1 2760 2629 2415 81 7 3 chr1 205423175 205423482 -76770182 + AluSx SINE Alu 5 312 0 2086 142 0 6 chr1 205423488 205423799 -76769865 + AluJo SINE Alu 3 311 -1 514 250 9 0 chr1 205424623 205424735 -76768929 - L2 LINE L2 -4 3309 3197 2296 103 0 31 chr1 205424955 205425276 -76768388 + AluSq SINE Alu 1 311 -2 274 304 181 7 chr1 205425961 205426099 -76767565 - L3 LINE CR1 -11 1566 1405 2191 100 4 4 chr1 205426470 205426797 -76766867 + AluSc SINE Alu 1 327 0 2131 125 3 3 chr1 205427226 205427522 -76766142 + AluSx SINE Alu 3 298 -14 2422 80 3 0 chr1 205428116 205428415 -76765249 + AluSp SINE Alu 2 301 -12 200 279 0 0 chr1 205428692 205428760 -76764904 + T-rich Low_complexity Low_complexity 1 68 0 1258 233 49 76 chr1 205429766 205430315 -76763349 - MLT1G1 LTR MaLR -18 537 1 2024 183 79 23 chr1 205430349 205430791 -76762873 - MLT1C LTR MaLR 0 467 1 473 268 68 37 chr1 205431632 205431822 -76761842 - MER91A DNA MER1_type 0 196 1 224 260 0 0 chr1 205432063 205432113 -76761551 + L2 LINE L2 3218 3267 -5 257 172 0 78 chr1 205433818 205433882 -76759782 + L2 LINE L2 3213 3271 -1 2441 87 0 7 chr1 205434089 205434398 -76759266 + AluSq SINE Alu 5 311 -2 293 278 103 16 chr1 205434838 205434964 -76758700 + MIR SINE MIR 56 192 -70 451 250 178 19 chr1 205435053 205435261 -76758403 - MIR SINE MIR -1 261 21 1400 96 16 0 chr1 205435359 205435546 -76758118 + MER4E LTR ERV1 1 190 -589 2342 77 3 20 chr1 205435547 205435844 -76757820 + AluSg SINE Alu 1 292 -18 1093 103 0 69 chr1 205435847 205435860 -76757804 + AluSg/x SINE Alu 125 287 -23 837 154 0 74 chr1 205435860 205436022 -76757642 + AluJo/FRAM SINE Alu 140 289 -13 64 43 0 0 chr1 205436023 205436115 -76757549 + AT_rich Low_complexity Low_complexity 1 92 0 3364 125 82 7 chr1 205436115 205436674 -76756990 + MER4E LTR ERV1 180 779 0 338 204 20 51 chr1 205436993 205437040 -76756624 - MIR3 SINE MIR -12 196 149 2561 72 0 0 chr1 205437040 205437345 -76756319 - AluSg SINE Alu -4 306 2 338 204 20 51 chr1 205437345 205437395 -76756269 - MIR3 SINE MIR -59 149 102 513 180 7 17 chr1 205437395 205437537 -76756127 + L1MC/D LINE L1 5345 5480 -762 401 200 27 0 chr1 205437539 205437614 -76756050 + AluJb SINE Alu 2 78 -234 1201 193 0 24 chr1 205437622 205437835 -76755829 + AluJb SINE Alu 54 261 -51 285 143 0 0 chr1 205437910 205437959 -76755705 + L1MC/D LINE L1 5472 5520 -839 394 331 73 25 chr1 205438246 205438645 -76755019 - L1M4 LINE L1 -988 5158 4741 2182 206 47 21 chr1 205438853 205439386 -76754278 - MER77 LTR ERV1 -18 587 41 761 283 37 66 chr1 205439388 205439494 -76754170 - L1MCa LINE L1 -2745 3681 3573 1452 172 35 19 chr1 205439494 205439755 -76753909 - AluJo SINE Alu -7 305 41 761 283 37 66 chr1 205439755 205440055 -76753609 - L1MCa LINE L1 -2853 3573 3287 1788 190 80 34 chr1 205440058 205440473 -76753191 - MLT2B1 LTR ERVL -2 518 85 1991 160 0 3 chr1 205440477 205440777 -76752887 + AluSx SINE Alu 7 305 -7 1056 167 11 22 chr1 205440777 205440957 -76752707 + AluJb SINE Alu 134 311 -1 512 132 11 0 chr1 205440957 205441048 -76752616 - MLT2B1 LTR ERVL -423 92 1 262 275 2 0 chr1 205441054 205441131 -76752533 - L1MCa LINE L1 -3142 3284 3207 27 29 0 0 chr1 205441467 205441501 -76752163 + AT_rich Low_complexity Low_complexity 1 34 0 2041 110 0 57 chr1 205441511 205441835 -76751829 + AluSx SINE Alu 1 307 0 473 333 30 12 chr1 205441864 205442029 -76751635 - MIR SINE MIR -44 218 51 310 209 58 0 chr1 205442877 205442963 -76750701 + L1ME4a LINE L1 6026 6116 -5 418 262 83 28 chr1 205443376 205443521 -76750143 + MIR SINE MIR 109 261 -1 276 269 177 5 chr1 205443591 205443777 -76749887 + MARNA DNA Mariner 313 530 -56 206 304 58 65 chr1 205443911 205444049 -76749615 - L2 LINE L2 -18 3295 3159 335 213 130 37 chr1 205444290 205444398 -76749266 - MIR SINE MIR -89 119 2 1856 161 38 50 chr1 205445135 205445552 -76748112 + MSTC LTR MaLR 17 428 0 302 298 43 0 chr1 205446192 205446286 -76747378 - L1MCa LINE L1 -4333 2093 1996 326 203 17 0 chr1 205446480 205446539 -76747125 - L2 LINE L2 0 3313 3254 634 330 21 18 chr1 205446577 205446859 -76746805 + L2 LINE L2 2412 2694 -620 518 290 65 65 chr1 205446884 205447163 -76746501 + MER21B LTR ERV1 21 299 -564 224 329 77 30 chr1 205447364 205447598 -76746066 - L2 LINE L2 -640 2674 2430 326 203 17 0 chr1 205447655 205447714 -76745950 + L2 LINE L2 3254 3313 0 342 366 89 24 chr1 205447813 205448149 -76745515 + L2 LINE L2 2879 3236 -36 1893 158 3 13 chr1 205448397 205448707 -76744957 - AluSx SINE Alu -1 311 5 4406 244 56 22 chr1 205449326 205450651 -76743013 + L1MC4 LINE L1 6461 7830 -212 2133 117 0 3 chr1 205450661 205450968 -76742696 + AluSx SINE Alu 1 306 0 260 310 99 58 chr1 205451757 205451999 -76741665 - L2 LINE L2 -421 2893 2642 465 281 76 19 chr1 205452643 205452818 -76740846 + MIR SINE MIR 2 181 -37 2180 99 17 7 chr1 205455092 205455386 -76738278 - AluJo SINE Alu -15 297 1 1032 193 112 30 chr1 205455510 205455743 -76737921 + MIR SINE MIR 8 259 -3 184 245 19 19 chr1 205455966 205456019 -76737645 + L2 LINE L2 2921 2973 -299 306 146 0 0 chr1 205456092 205456140 -76737524 + MER96 DNA MER1_type? 37 84 -91 441 297 88 36 chr1 205456140 205456389 -76737275 + L2 LINE L2 3008 3269 -3 197 309 59 0 chr1 205456640 205456708 -76736956 - L2 LINE L2 -1 3271 3200 2144 147 0 0 chr1 205456924 205457223 -76736441 + AluSx SINE Alu 1 299 -13 262 321 35 45 chr1 205457757 205458086 -76735578 - L2 LINE L2 -189 3083 2758 248 314 186 48 chr1 205458115 205458405 -76735259 - L2 LINE L2 -652 2662 2324 1599 109 133 31 chr1 205458405 205458697 -76734967 + AluSx SINE Alu 1 318 0 248 314 186 48 chr1 205458697 205458717 -76734947 - L2 LINE L2 -990 2324 2308 353 296 92 82 chr1 205458742 205458844 -76734820 + MIR SINE MIR 49 149 -113 1978 136 0 14 chr1 205458844 205459131 -76734533 - AluSx SINE Alu -19 293 11 353 296 92 82 chr1 205459131 205459234 -76734430 + MIR SINE MIR 149 256 -6 281 302 60 26 chr1 205459750 205459866 -76733798 + L2 LINE L2 3142 3261 -11 2277 88 17 14 chr1 205460311 205460607 -76733057 + AluSq SINE Alu 1 297 -16 1482 145 20 24 chr1 205461759 205462007 -76731657 + AluJb SINE Alu 64 310 -2 1894 151 3 41 chr1 205462010 205462133 -76731531 + AluJo SINE Alu 3 129 -183 1909 158 7 13 chr1 205462133 205462437 -76731227 - AluSx SINE Alu -10 302 1 1894 151 3 41 chr1 205462437 205462631 -76731033 + AluJo SINE Alu 129 308 -4 688 108 0 0 chr1 205463030 205463123 -76730541 - AluS SINE Alu -220 93 1 1092 162 50 0 chr1 205463448 205463627 -76730037 - MER5A DNA MER1_type -1 188 1 2650 125 56 28 chr1 205463761 205464072 -76729592 + MER6 DNA MER2_type 129 430 -435 2140 126 3 10 chr1 205464072 205464381 -76729283 + AluJb SINE Alu 1 307 -5 2650 125 56 28 chr1 205464381 205464533 -76729131 + MER6 DNA MER2_type 430 865 0 510 294 57 16 chr1 205466091 205466285 -76727379 - MIR SINE MIR -10 252 51 389 280 170 16 chr1 205466289 205466471 -76727193 - LTR16C LTR ERVL 0 491 282 632 203 66 96 chr1 205466797 205466994 -76726670 - L2 LINE L2 0 3313 3123 224 318 46 72 chr1 205467336 205467578 -76726086 - L2 LINE L2 -293 2979 2746 303 183 24 73 chr1 205469852 205469934 -76723730 + L2 LINE L2 3231 3308 -5 415 298 60 48 chr1 205469992 205470240 -76723424 - L3 LINE CR1 -3 1574 1324 180 176 0 0 chr1 205471651 205471685 -76721979 + CT-rich Low_complexity Low_complexity 4 37 0 312 143 20 0 chr1 205475244 205475293 -76718371 + MIR SINE MIR 2 51 -211 192 40 0 0 chr1 205475301 205475326 -76718338 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 726 117 0 10 chr1 205475346 205475449 -76718215 - FLAM_C SINE Alu -40 103 2 847 191 111 10 chr1 205475449 205475648 -76718016 + MIR SINE MIR 44 262 0 1005 113 0 35 chr1 205476309 205476450 -76717214 + AluSq/x SINE Alu 3 138 -174 273 77 0 0 chr1 205476580 205476619 -76717045 - Alu SINE Alu -262 39 1 1327 150 211 13 chr1 205477959 205478272 -76715392 - THE1C LTR MaLR 0 375 1 324 0 0 0 chr1 205479302 205479338 -76714326 + (T)n Simple_repeat Simple_repeat 1 36 0 515 220 233 13 chr1 205480656 205480806 -76712858 + MER5A DNA MER1_type 4 186 -3 1207 181 128 19 chr1 205481209 205481475 -76712189 - AluSg SINE Alu -15 295 1 1078 141 25 0 chr1 205481478 205481641 -76712023 - FRAM SINE Alu -17 159 1 546 281 138 53 chr1 205483482 205484029 -76709635 - L2 LINE L2 -5 3267 2589 230 301 15 7 chr1 205484666 205484802 -76708862 - L1P LINE L1 -2904 3242 3106 668 264 162 27 chr1 205485059 205485577 -76708087 + L2 LINE L2 2688 3292 -21 1417 189 145 50 chr1 205485940 205486395 -76707269 - MLT1D LTR MaLR -7 498 1 3624 150 44 7 chr1 205486436 205486560 -76707104 - MER41B LTR ERV1 0 635 517 2180 116 26 0 chr1 205486560 205486863 -76706801 + AluSx SINE Alu 1 311 -1 3624 150 44 7 chr1 205486863 205487350 -76706314 - MER41B LTR ERV1 -118 517 1 205 253 87 21 chr1 205487914 205488035 -76705629 + MIR SINE MIR 18 150 -62 2867 164 76 52 chr1 205488345 205489053 -76704611 - LTR8A LTR ERV1 -2 725 1 3547 131 62 67 chr1 205489435 205490166 -76703498 + LTR8A LTR ERV1 1 727 0 1473 206 111 26 chr1 205490270 205490692 -76702972 - MLT1C LTR MaLR 0 467 10 1172 203 23 0 chr1 205490726 205490943 -76702721 - MER58A DNA MER1_type -1 223 2 518 231 74 0 chr1 205491181 205491302 -76702362 - MIR SINE MIR -121 141 12 2922 159 114 35 chr1 205492696 205492763 -76700901 - MER21B LTR ERV1 0 863 803 1812 141 58 4 chr1 205492763 205493039 -76700625 + AluSx SINE Alu 1 291 -21 2922 159 114 35 chr1 205493039 205493576 -76700088 - MER21B LTR ERV1 -60 803 211 1201 173 17 0 chr1 205493619 205493856 -76699808 + MER33 DNA MER1_type 5 245 -79 327 277 79 10 chr1 205494731 205494832 -76698832 + L2 LINE L2 3138 3245 -27 252 246 14 58 chr1 205495056 205495125 -76698539 + L2 LINE L2 3205 3270 -2 1520 161 55 38 chr1 205496318 205496610 -76697054 - AluJb SINE Alu -9 303 7 2253 99 119 59 chr1 205496709 205496944 -76696720 - MSTA LTR MaLR 0 428 158 2184 125 0 0 chr1 205496944 205497232 -76696432 - AluSx SINE Alu -18 294 7 2253 99 119 59 chr1 205497232 205497400 -76696264 - MSTA LTR MaLR -270 158 1 229 354 13 70 chr1 205497427 205497490 -76696174 + L2 LINE L2 3117 3182 -90 2387 99 0 0 chr1 205497490 205497794 -76695870 - AluSx SINE Alu -8 304 1 229 354 13 70 chr1 205497794 205497888 -76695776 + L2 LINE L2 3182 3265 -7 325 339 134 6 chr1 205497897 205498068 -76695596 + MIR3 SINE MIR 2 194 -14 780 229 72 0 chr1 205498157 205498310 -76695354 + FRAM SINE Alu 3 166 0 22 0 0 0 chr1 205498435 205498457 -76695207 + AT_rich Low_complexity Low_complexity 1 22 0 388 322 53 33 chr1 205498463 205498615 -76695049 - L2 LINE L2 -1 3271 3117 446 254 66 0 chr1 205498867 205498989 -76694675 + L2 LINE L2 3184 3313 0 2155 124 7 0 chr1 205499010 205499300 -76694364 + AluSx SINE Alu 6 297 -15 546 119 46 64 chr1 205499300 205499409 -76694255 + L1MB2 LINE L1 6065 6171 0 403 195 0 13 chr1 205499436 205499513 -76694151 + AluS SINE Alu 2 77 -233 1930 103 0 37 chr1 205499652 205499924 -76693740 + AluSx SINE Alu 34 295 -17 200 262 131 0 chr1 205499924 205499985 -76693679 - MIR SINE MIR -174 88 20 2349 78 0 0 chr1 205500165 205500482 -76693182 + AluSc SINE Alu 1 317 0 2275 101 0 26 chr1 205500493 205500801 -76692863 + AluSx SINE Alu 1 300 -12 1061 218 72 49 chr1 205500844 205501193 -76692471 - MLT1L LTR MaLR -139 476 120 1790 115 0 0 chr1 205502191 205502426 -76691238 - AluSq SINE Alu -78 235 1 1304 122 51 0 chr1 205502784 205502980 -76690684 + AluSp SINE Alu 1 206 -107 180 275 114 54 chr1 205503681 205503830 -76689834 + MIR SINE MIR 34 191 -71 992 281 4 23 chr1 205504208 205504352 -76689312 + MIR SINE MIR 2 140 -122 2183 127 0 19 chr1 205504352 205504666 -76688998 + AluSx SINE Alu 1 308 -4 992 281 4 23 chr1 205504666 205504781 -76688883 + MIR SINE MIR 140 256 -6 1949 106 0 4 chr1 205505230 205505485 -76688179 + AluSg SINE Alu 1 254 -56 226 250 83 0 chr1 205505992 205506064 -76687600 + MIR SINE MIR 36 113 -95 382 177 40 12 chr1 205506101 205506225 -76687439 + MIR SINE MIR 92 262 0 293 301 12 0 chr1 205506223 205506306 -76687358 + L2 LINE L2 3222 3305 -8 * 186 188 0 0 chr1 205506329 205506361 -76687303 + L2 LINE L2 3272 3303 -10 1943 124 89 0 chr1 205507226 205507508 -76686156 - AluSx SINE Alu -5 307 1 2469 69 0 34 chr1 205507605 205507925 -76685739 - AluSc SINE Alu 0 309 1 1864 148 30 7 chr1 205508127 205508424 -76685240 - AluSx SINE Alu -8 304 1 739 190 31 6 chr1 205508598 205508761 -76684903 + Charlie5 DNA MER1_type 2 168 -2444 911 146 62 14 chr1 205508778 205509017 -76684647 + Charlie5 DNA MER1_type 2352 2585 -27 264 358 0 11 chr1 205509462 205509557 -76684107 + L2 LINE L2 2720 2813 -501 795 207 30 6 chr1 205509693 205509862 -76683802 + MER5B DNA MER1_type 1 173 -5 2242 93 34 0 chr1 205510014 205510305 -76683359 + AluSq SINE Alu 1 301 -12 445 217 0 118 chr1 205510549 205510710 -76682954 + MIR SINE MIR 111 252 -10 186 293 49 98 chr1 205511358 205511440 -76682224 + MIR3 SINE MIR 45 121 -87 2566 68 7 0 chr1 205511440 205511748 -76681916 - AluSp SINE Alu -3 310 1 186 293 49 98 chr1 205511748 205511788 -76681876 + MIR3 SINE MIR 121 161 -47 201 217 133 0 chr1 205511837 205511897 -76681767 - L2 LINE L2 0 3272 3205 668 238 6 50 chr1 205512559 205512740 -76680924 + MER5B DNA MER1_type 6 178 0 250 262 24 79 chr1 205512810 205512936 -76680728 + L2 LINE L2 2923 3041 -272 2308 83 0 20 chr1 205513443 205513581 -76680083 + AluSx SINE Alu 1 140 -172 2279 72 28 0 chr1 205513581 205513872 -76679792 + AluY SINE Alu 1 299 -12 2308 83 0 20 chr1 205513872 205514035 -76679629 + AluSx SINE Alu 140 296 -16 655 203 0 51 chr1 205515060 205515253 -76678411 + FLAM_A SINE Alu 2 133 0 319 250 0 0 chr1 205515527 205515599 -76678065 + MIR SINE MIR 62 133 -129 556 274 62 6 chr1 205517837 205518016 -76675648 - MIR SINE MIR -2 260 72 735 258 91 20 chr1 205518031 205518229 -76675435 - AluJo SINE Alu -99 213 2 2325 110 0 7 chr1 205518350 205518658 -76675006 + AluSx SINE Alu 1 306 -6 272 251 165 53 chr1 205518782 205518984 -76674680 + MIR SINE MIR 14 242 -20 361 329 86 5 chr1 205519817 205519972 -76673692 - MIR SINE MIR -62 146 3 2159 118 7 13 chr1 205519988 205520124 -76673540 + AluSx SINE Alu 1 136 -176 2438 64 6 32 chr1 205520124 205520435 -76673229 + AluY SINE Alu 1 303 -8 2159 118 7 13 chr1 205520435 205520603 -76673061 + AluSx SINE Alu 136 303 -9 239 67 0 0 chr1 205520783 205520813 -76672851 + (TC)n Simple_repeat Simple_repeat 1 30 0 297 266 98 109 chr1 205521129 205521215 -76672449 - MIR SINE MIR -25 237 152 1924 140 0 3 chr1 205521215 205521500 -76672164 - AluJb SINE Alu -23 289 6 297 266 98 109 chr1 205521500 205521597 -76672067 - MIR SINE MIR -110 152 56 534 232 137 36 chr1 205521863 205522031 -76671633 - MIR SINE MIR -15 247 63 349 196 72 31 chr1 205522056 205522153 -76671511 + MIR SINE MIR 106 206 -56 568 273 192 5 chr1 205522554 205522752 -76670912 + MIR SINE MIR 8 242 -20 270 284 179 0 chr1 205522742 205522837 -76670827 - L2 LINE L2 -22 3291 3180 * 182 241 66 73 chr1 205522928 205523065 -76670599 - L2 LINE L2 -382 2932 2797 286 316 89 21 chr1 205523166 205523356 -76670308 - L2 LINE L2 -682 2632 2430 536 201 63 69 chr1 205523520 205523694 -76669970 + L1ME2 LINE L1 5963 6135 -29 42 0 0 0 chr1 205524093 205524135 -76669529 + AT_rich Low_complexity Low_complexity 1 42 0 2486 75 0 0 chr1 205524137 205524431 -76669233 + AluSc SINE Alu 1 294 -15 4619 125 44 30 chr1 205524431 205525302 -76668362 - L1MB2 LINE L1 -4 6167 5285 276 299 183 0 chr1 205525623 205525820 -76667844 + L1ME4a LINE L1 5737 5969 -152 1223 157 15 20 chr1 205525997 205526225 -76667439 + AluJb SINE Alu 86 312 0 198 158 184 0 chr1 205526475 205526513 -76667151 - L2 LINE L2 -16 3297 3253 597 103 129 35 chr1 205526516 205526632 -76667032 + THE1B LTR MaLR 2 128 -236 1511 140 0 9 chr1 205527701 205527929 -76665735 + AluJo SINE Alu 86 311 -1 426 296 209 24 chr1 205528242 205528664 -76665000 - L2 LINE L2 -5 3308 2809 1960 93 46 29 chr1 205528807 205529087 -76664577 + AluSg SINE Alu 5 289 -21 472 308 52 28 chr1 205529395 205529606 -76664058 - LTR33 LTR ERVL -304 217 2 460 229 86 0 chr1 205530057 205530162 -76663502 + L2 LINE L2 3200 3313 0 1575 133 30 121 chr1 205530165 205530495 -76663169 - AluYb8 SINE Alu -18 300 1 848 202 61 0 chr1 205530508 205530706 -76662958 - L1PB4 LINE L1 0 6156 5947 244 226 0 0 chr1 205531120 205531173 -76662491 + A-rich Low_complexity Low_complexity 5 57 0 229 376 70 6 chr1 205532292 205532449 -76661215 + MIR SINE MIR 48 214 -48 2446 154 83 8 chr1 205532477 205532558 -76661106 + MLT1D LTR MaLR 1 75 -430 204 40 0 0 chr1 205532558 205532583 -76661081 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2446 154 83 8 chr1 205532583 205532969 -76660695 + MLT1D LTR MaLR 75 503 -2 1362 68 12 0 chr1 205533304 205533467 -76660197 + AluY SINE Alu 1 165 -146 2650 168 32 12 chr1 205534091 205534586 -76659078 + LTR22 LTR ERVK 1 505 -4 886 165 6 6 chr1 205536017 205536175 -76657489 - MLT1A2 LTR MaLR -213 161 4 292 228 47 60 chr1 205536454 205536603 -76657061 - L1MEd LINE L1 -4700 1431 1285 388 251 83 83 chr1 205536775 205537045 -76656619 - L1MEd LINE L1 -4914 1205 933 1966 168 0 0 chr1 205537045 205537337 -76656327 - AluJo SINE Alu -20 292 1 388 251 83 83 chr1 205537337 205537429 -76656235 - L1MEd LINE L1 -5185 934 843 619 254 77 11 chr1 205537490 205537580 -76656084 + L2 LINE L2 3119 3202 -111 2208 127 38 24 chr1 205537580 205537950 -76655714 - THE1C LTR MaLR 0 375 1 619 254 77 11 chr1 205537950 205538040 -76655624 + L2 LINE L2 3202 3311 -2 1719 129 24 0 chr1 205538635 205538883 -76654781 - AluSq SINE Alu -59 254 1 429 143 16 0 chr1 205588978 205589041 -76604623 + AluJ/FRAM SINE Alu 217 280 -32 201 147 0 0 chr1 205589043 205589077 -76604587 + (CA)n Simple_repeat Simple_repeat 2 35 0 2509 47 0 25 chr1 205589286 205589605 -76604059 - AluY SINE Alu 0 311 1 1606 283 30 71 chr1 205589793 205590514 -76603150 + MER115 DNA AcHobo 2 693 0 4482 112 104 134 chr1 205590992 205592470 -76601194 + pTR5 LTR ERV1 741 2438 0 2087 125 0 0 chr1 205592661 205592956 -76600708 + AluSg SINE Alu 1 295 -15 2221 102 0 13 chr1 205592958 205593272 -76600392 + AluSg SINE Alu 1 310 0 2184 97 0 7 chr1 205593278 205593588 -76600076 + AluSg1 SINE Alu 1 308 -1 2095 112 0 3 chr1 205593596 205593890 -76599774 + AluSg SINE Alu 1 293 -17 1622 173 42 0 chr1 205596052 205596335 -76597329 + AluJb SINE Alu 1 295 -17 216 111 0 0 chr1 205596592 205596628 -76597036 + (A)n Simple_repeat Simple_repeat 1 36 0 735 157 0 15 chr1 205597987 205598121 -76595543 - Charlie1 DNA MER1_type -1 2760 2629 2287 81 7 3 chr1 205598131 205598438 -76595226 + AluSx SINE Alu 5 312 0 1968 142 0 6 chr1 205598444 205598755 -76594909 + AluJo SINE Alu 3 311 -1 562 250 9 0 chr1 205599579 205599691 -76593973 - L2 LINE L2 -4 3309 3197 2172 103 0 31 chr1 205599911 205600232 -76593432 + AluSq SINE Alu 1 311 -2 327 304 181 7 chr1 205600917 205601055 -76592609 - L3 LINE CR1 -11 1566 1405 2084 99 3 3 chr1 205601426 205601709 -76591955 + AluSc SINE Alu 1 283 -26 2010 125 3 3 chr1 205602071 205602367 -76591297 + AluSx SINE Alu 3 298 -14 2291 80 3 0 chr1 205602961 205603260 -76590404 + AluSp SINE Alu 2 301 -12 200 279 0 0 chr1 205603537 205603605 -76590059 + T-rich Low_complexity Low_complexity 1 68 0 1255 233 49 76 chr1 205604611 205605160 -76588504 - MLT1G1 LTR MaLR -18 537 1 2024 183 79 23 chr1 205605194 205605636 -76588028 - MLT1C LTR MaLR 0 467 1 487 268 68 37 chr1 205606477 205606667 -76586997 - MER91A DNA MER1_type 0 196 1 244 260 0 0 chr1 205606908 205606958 -76586706 + L2 LINE L2 3218 3267 -5 285 172 0 78 chr1 205608663 205608727 -76584937 + L2 LINE L2 3213 3271 -1 2360 81 0 7 chr1 205608934 205609243 -76584421 + AluSq SINE Alu 5 311 -2 193 296 20 71 chr1 205609603 205609701 -76583963 + L2 LINE L2 3105 3197 -75 * 347 278 103 16 chr1 205609683 205609809 -76583855 + MIR SINE MIR 56 192 -70 535 258 168 20 chr1 205609898 205610120 -76583544 - MIR SINE MIR -1 261 14 1386 96 16 0 chr1 205610204 205610391 -76583273 + MER4E LTR ERV1 1 190 -589 2209 77 3 20 chr1 205610392 205610689 -76582975 + AluSg SINE Alu 1 292 -18 1023 103 0 69 chr1 205610692 205610867 -76582797 + AluSg/x SINE Alu 127 289 -23 64 43 0 0 chr1 205610868 205610960 -76582704 + AT_rich Low_complexity Low_complexity 1 92 0 3392 127 81 7 chr1 205610960 205611519 -76582145 + MER4E LTR ERV1 180 779 0 338 204 20 51 chr1 205611838 205611885 -76581779 - MIR3 SINE MIR -12 196 149 2413 72 0 0 chr1 205611885 205612190 -76581474 - AluSg SINE Alu -4 306 2 338 204 20 51 chr1 205612190 205612240 -76581424 - MIR3 SINE MIR -59 149 102 534 180 7 17 chr1 205612240 205612382 -76581282 + L1MD2 LINE L1 5345 5480 -762 411 197 26 0 chr1 205612383 205612459 -76581205 + AluJb SINE Alu 1 78 -224 1097 193 0 24 chr1 205612467 205612680 -76580984 + AluJb SINE Alu 54 261 -51 298 151 0 3 chr1 205612747 205612804 -76580860 + L1MD2 LINE L1 5465 5520 -787 1481 94 20 67 chr1 205612840 205612992 -76580672 - L1MA1 LINE L1 -26 6276 6137 2272 58 0 20 chr1 205612992 205613309 -76580355 + AluY SINE Alu 1 311 0 1481 94 20 67 chr1 205613309 205613408 -76580256 - L1MA1 LINE L1 -165 6137 6035 * 2813 214 58 12 chr1 205613407 205614110 -76579554 + L1MD2 LINE L1 5577 6331 -13 1746 122 47 0 chr1 205614262 205614558 -76579106 - AluSp SINE Alu -3 310 1 1675 115 0 0 chr1 205614916 205615151 -76578513 + AluSq SINE Alu 1 235 -78 1153 219 136 46 chr1 205616149 205616538 -76577126 + MLT1L LTR MaLR 120 543 -72 2129 101 0 26 chr1 205616541 205616849 -76576815 - AluSx SINE Alu -12 300 1 2215 78 0 0 chr1 205616860 205617177 -76576487 - AluSc SINE Alu 0 317 1 196 288 95 3 chr1 205617357 205617418 -76576246 + MIR SINE MIR 15 78 -130 2114 95 0 33 chr1 205617418 205617723 -76575941 - AluSx SINE Alu -17 295 1 196 288 95 3 chr1 205617723 205617749 -76575915 + MIR SINE MIR 78 100 -108 552 119 46 64 chr1 205617749 205617858 -76575806 - L1MB2 LINE L1 0 6171 6065 2007 124 7 0 chr1 205617858 205618148 -76575516 - AluSx SINE Alu -15 297 6 444 254 66 0 chr1 205618169 205618291 -76575373 - L2 LINE L2 0 3313 3184 387 322 53 33 chr1 205618543 205618695 -76574969 + L2 LINE L2 3117 3271 -1 22 0 0 0 chr1 205618701 205618723 -76574941 + AT_rich Low_complexity Low_complexity 1 22 0 750 229 72 0 chr1 205618848 205619001 -76574663 - FRAM SINE Alu 0 166 3 325 339 134 6 chr1 205619090 205619261 -76574403 - MIR3 SINE MIR -14 194 2 235 354 13 70 chr1 205619270 205619364 -76574300 - L2 LINE L2 -7 3265 3182 2242 99 0 0 chr1 205619364 205619668 -76573996 + AluSx SINE Alu 1 304 -8 235 354 13 70 chr1 205619668 205619731 -76573933 - L2 LINE L2 -90 3182 3117 2229 99 119 59 chr1 205619758 205619926 -76573738 + MSTA LTR MaLR 1 158 -270 2040 125 0 0 chr1 205619926 205620214 -76573450 + AluSx SINE Alu 7 294 -18 2229 99 119 59 chr1 205620214 205620449 -76573215 + MSTA LTR MaLR 158 428 0 1385 158 58 41 chr1 205620548 205620840 -76572824 + AluJb SINE Alu 7 303 -9 252 246 14 58 chr1 205622033 205622102 -76571562 - L2 LINE L2 -2 3270 3205 318 277 79 10 chr1 205622326 205622427 -76571237 - L2 LINE L2 -27 3245 3138 2040 122 0 0 chr1 205624299 205624587 -76569077 - AluSx SINE Alu -18 294 7 1123 131 23 6 chr1 205624699 205624875 -76568789 - AluSq SINE Alu -18 295 117 1678 111 42 15 chr1 205625821 205626083 -76567581 - AluSx SINE Alu -12 300 32 2096 93 34 0 chr1 205626374 205626665 -76566999 - AluSq SINE Alu -12 301 1 791 207 30 6 chr1 205626817 205626986 -76566678 - MER5B DNA MER1_type -5 173 1 263 358 0 11 chr1 205627122 205627217 -76566447 - L2 LINE L2 -501 2813 2720 953 146 62 14 chr1 205627662 205627901 -76565763 - Charlie5 DNA MER1_type -27 2585 2352 792 189 30 6 chr1 205627918 205628082 -76565582 - Charlie5 DNA MER1_type -2444 168 1 1920 132 26 7 chr1 205628255 205628559 -76565105 + AluSx SINE Alu 1 310 -2 2317 69 0 34 chr1 205628755 205629075 -76564589 + AluSc SINE Alu 1 309 0 1799 124 89 0 chr1 205629172 205629454 -76564210 + AluSx SINE Alu 1 307 -5 188 188 0 0 chr1 205630319 205630351 -76563313 - L2 LINE L2 -10 3303 3272 294 301 12 0 chr1 205630374 205630457 -76563207 - L2 LINE L2 -8 3305 3222 * 386 177 40 12 chr1 205630455 205630579 -76563085 - MIR SINE MIR 0 262 92 221 250 83 0 chr1 205630616 205630688 -76562976 - MIR SINE MIR -95 113 36 2238 98 0 3 chr1 205631328 205631633 -76562031 - AluSg SINE Alu -6 304 1 956 274 4 45 chr1 205632082 205632203 -76561461 - MIR SINE MIR -6 256 132 2029 123 0 19 chr1 205632203 205632511 -76561153 - AluSx SINE Alu -10 302 1 956 274 4 45 chr1 205632511 205632655 -76561009 - MIR SINE MIR -130 132 2 25 83 0 0 chr1 205634657 205634717 -76558947 + GC_rich Low_complexity Low_complexity 1 60 0 26 64 0 0 chr1 205635103 205635150 -76558514 + GC_rich Low_complexity Low_complexity 1 47 0 309 143 20 0 chr1 205637937 205637986 -76555678 + MIR SINE MIR 2 51 -211 192 40 0 0 chr1 205637994 205638019 -76555645 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 710 117 0 10 chr1 205638039 205638142 -76555522 - FLAM_C SINE Alu -40 103 2 854 191 111 10 chr1 205638142 205638341 -76555323 + MIR SINE MIR 44 262 0 1262 66 0 0 chr1 205639002 205639154 -76554510 + AluSq SINE Alu 3 154 -159 2163 106 0 0 chr1 205639190 205639483 -76554181 - AluSx SINE Alu -19 293 1 1205 150 211 13 chr1 205640823 205641136 -76552528 - THE1C LTR MaLR 0 375 1 324 0 0 0 chr1 205642166 205642202 -76551462 + (T)n Simple_repeat Simple_repeat 1 36 0 470 227 233 13 chr1 205643520 205643670 -76549994 + MER5A DNA MER1_type 4 186 -3 1261 184 124 15 chr1 205644073 205644339 -76549325 - AluSg SINE Alu -15 295 1 1098 140 24 0 chr1 205644342 205644506 -76549158 - FRAM SINE Alu -16 160 1 475 298 129 44 chr1 205646347 205646894 -76546770 - L2 LINE L2 -5 3267 2589 273 313 9 54 chr1 205649026 205649138 -76544526 + MIR SINE MIR 35 141 -121 932 220 40 12 chr1 205649262 205649549 -76544115 - MLT1A2 LTR MaLR 0 374 1 33 66 0 0 chr1 205651020 205651081 -76542583 + GC_rich Low_complexity Low_complexity 1 61 0 212 0 0 35 chr1 205651186 205651215 -76542449 + (CGGGG)n Simple_repeat Simple_repeat 1 28 0 180 176 0 0 chr1 205652365 205652399 -76541265 + GA-rich Low_complexity Low_complexity 4 37 0 379 325 49 49 chr1 205653811 205654057 -76539607 + L3 LINE CR1 1329 1574 -3 281 183 24 73 chr1 205654115 205654197 -76539467 - L2 LINE L2 -5 3308 3231 2072 126 11 0 chr1 205656921 205657199 -76536465 - AluSp SINE Alu -32 281 1 593 203 66 96 chr1 205657243 205657440 -76536224 + L2 LINE L2 3123 3313 0 421 280 170 16 chr1 205657766 205657948 -76535716 + LTR16C LTR ERVL 282 491 0 474 309 52 10 chr1 205657952 205658146 -76535518 + MIR SINE MIR 51 252 -10 2757 120 52 26 chr1 205659703 205659856 -76533808 - MER6 DNA MER2_type 0 865 717 2154 126 3 10 chr1 205659856 205660165 -76533499 - AluJb SINE Alu -5 307 1 2757 120 52 26 chr1 205660165 205660476 -76533188 - MER6 DNA MER2_type -148 717 129 1020 162 50 0 chr1 205660610 205660789 -76532875 + MER5A DNA MER1_type 1 188 -1 644 108 0 0 chr1 205661114 205661207 -76532457 + AluS SINE Alu 1 93 -219 1906 151 3 41 chr1 205661606 205661800 -76531864 - AluJo SINE Alu -4 308 129 1919 158 7 13 chr1 205661800 205662104 -76531560 + AluSx SINE Alu 1 302 -10 1906 151 3 41 chr1 205662104 205662227 -76531437 - AluJo SINE Alu -183 129 3 1651 148 18 22 chr1 205662230 205662507 -76531157 - AluJb SINE Alu -2 310 35 590 274 76 9 chr1 205662605 205662789 -76530875 + MIR3 SINE MIR 11 207 -1 2286 88 17 14 chr1 205664188 205664484 -76529180 - AluSq SINE Alu -16 297 1 253 302 60 26 chr1 205664929 205665045 -76528619 - L2 LINE L2 -11 3261 3142 197 211 0 0 chr1 205665690 205665728 -76527936 - L2 LINE L2 -8 3305 3268 * 313 296 92 82 chr1 205665694 205665797 -76527867 - MIR SINE MIR -6 256 155 1986 136 0 14 chr1 205665797 205666084 -76527580 + AluSx SINE Alu 11 293 -19 313 296 92 82 chr1 205666084 205666186 -76527478 - MIR SINE MIR -107 155 49 192 320 183 45 chr1 205666211 205666231 -76527433 + L2 LINE L2 2308 2324 -990 1615 109 133 31 chr1 205666231 205666523 -76527141 - AluSx SINE Alu 0 318 1 192 320 183 45 chr1 205666523 205666813 -76526851 + L2 LINE L2 2324 2662 -652 213 321 35 45 chr1 205666842 205667171 -76526493 + L2 LINE L2 2758 3083 -189 2149 147 0 0 chr1 205667705 205668004 -76525660 - AluSx SINE Alu -13 299 1 183 309 59 0 chr1 205668220 205668288 -76525376 + L2 LINE L2 3200 3271 -1 389 297 88 36 chr1 205668539 205668788 -76524876 - L2 LINE L2 -3 3269 3008 312 146 0 0 chr1 205668788 205668836 -76524828 - MER96 DNA MER1_type? -91 84 37 972 197 112 30 chr1 205669185 205669418 -76524246 - MIR SINE MIR -3 259 8 2312 94 16 7 chr1 205669542 205669850 -76523814 + AluJo SINE Alu 1 311 -1 238 203 14 14 chr1 205670270 205670344 -76523320 + CT-rich Low_complexity Low_complexity 3 76 0 548 264 65 20 chr1 205670758 205670959 -76522705 - L2 LINE L2 0 3313 3104 508 252 123 66 chr1 205671029 205671323 -76522341 - L2 LINE L2 -459 2855 2540 2163 118 7 13 chr1 205671323 205671491 -76522173 - AluSx SINE Alu -9 303 136 2448 64 6 32 chr1 205671491 205671802 -76521862 - AluY SINE Alu -8 303 1 2163 118 7 13 chr1 205671802 205671938 -76521726 - AluSx SINE Alu -176 136 1 508 252 123 66 chr1 205671938 205671954 -76521710 - L2 LINE L2 -774 2540 2527 340 335 84 3 chr1 205671954 205672109 -76521555 + MIR SINE MIR 3 165 -62 242 236 87 80 chr1 205672985 205673137 -76520527 - MIR SINE MIR -78 130 24 2327 110 0 7 chr1 205673268 205673576 -76520088 - AluSx SINE Alu -6 306 1 665 258 91 20 chr1 205673697 205673895 -76519769 + AluJo SINE Alu 2 213 -99 522 274 62 6 chr1 205673910 205674089 -76519575 + MIR SINE MIR 72 260 -2 302 250 0 0 chr1 205676327 205676399 -76517265 - MIR SINE MIR -129 133 62 607 203 0 51 chr1 205676673 205676866 -76516798 - FLAM_A SINE Alu 0 133 2 2349 80 0 20 chr1 205677892 205678055 -76515609 - AluSx SINE Alu -16 296 140 2296 72 28 0 chr1 205678055 205678346 -76515318 - AluY SINE Alu -12 299 1 2349 80 0 20 chr1 205678346 205678484 -76515180 - AluSx SINE Alu -172 140 1 245 346 13 38 chr1 205678742 205678901 -76514763 - L2 LINE L2 -191 3081 2927 308 135 39 0 chr1 205678979 205679031 -76514633 - MER5B DNA MER1_type 0 178 125 186 217 133 0 chr1 205679777 205679837 -76513827 + L2 LINE L2 3205 3272 0 2577 68 7 0 chr1 205679926 205680234 -76513430 + AluSp SINE Alu 1 310 -3 422 217 0 115 chr1 205680964 205681121 -76512543 - MIR SINE MIR -10 252 114 185 235 0 82 chr1 205681534 205681619 -76512045 + L3 LINE CR1 900 977 -600 287 205 13 13 chr1 205682080 205682158 -76511506 + (CA)n Simple_repeat Simple_repeat 1 78 0 564 110 43 12 chr1 205682287 205682451 -76511213 + (CA)n Simple_repeat Simple_repeat 2 170 0 656 96 44 12 chr1 205682477 205682736 -76510928 + (CA)n Simple_repeat Simple_repeat 1 267 0 1975 93 46 29 chr1 205683022 205683302 -76510362 - AluSg SINE Alu -21 289 5 333 303 206 21 chr1 205683445 205683867 -76509797 + L2 LINE L2 2809 3308 -5 1509 140 0 9 chr1 205684180 205684408 -76509256 - AluJo SINE Alu -1 311 86 567 316 244 8 chr1 205685759 205686350 -76507314 + L3 LINE CR1 844 1573 -4 398 279 46 33 chr1 205686413 205686611 -76507053 + MIR SINE MIR 5 202 -57 261 139 0 0 chr1 205686617 205686660 -76507004 + (TG)n Simple_repeat Simple_repeat 2 44 0 432 285 45 21 chr1 205688818 205688993 -76504671 - MIR SINE MIR -37 171 2 221 314 99 58 chr1 205689637 205689879 -76503785 + L2 LINE L2 2642 2893 -421 184 42 0 0 chr1 205690668 205690692 -76502972 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2146 117 0 3 chr1 205690692 205690975 -76502689 - AluSx SINE Alu -30 282 1 4406 244 56 22 chr1 205690985 205692310 -76501354 - L1MC4 LINE L1 -212 7830 6461 1893 158 3 13 chr1 205692929 205693239 -76500425 + AluSx SINE Alu 5 311 -1 330 338 85 27 chr1 205693487 205694006 -76499658 - L2 LINE L2 -36 3236 2683 1034 276 59 89 chr1 205694031 205694697 -76498967 - MER21B LTR ERV1 -197 666 21 634 330 21 18 chr1 205694722 205695004 -76498660 - L2 LINE L2 -620 2694 2412 326 203 17 0 chr1 205695042 205695101 -76498563 + L2 LINE L2 3254 3313 0 360 189 0 0 chr1 205695292 205695366 -76498298 + (TG)n Simple_repeat Simple_repeat 2 75 0 1856 161 38 50 chr1 205696029 205696446 -76497218 - MSTC LTR MaLR 0 428 17 517 206 109 87 chr1 205697183 205697397 -76496267 + MIR SINE MIR 2 229 -33 206 304 58 65 chr1 205697606 205697744 -76495920 + L2 LINE L2 3159 3295 -18 276 269 177 5 chr1 205697878 205698064 -76495600 - MARNA DNA Mariner -56 530 313 418 262 83 28 chr1 205698134 205698279 -76495385 - MIR SINE MIR -1 261 109 310 209 58 0 chr1 205698692 205698778 -76494886 - L1ME4a LINE L1 -5 6116 6026 473 333 30 12 chr1 205699626 205699791 -76493873 + MIR SINE MIR 51 218 -44 2040 110 0 57 chr1 205699820 205700144 -76493520 - AluSx SINE Alu 0 307 1 27 29 0 0 chr1 205700154 205700188 -76493476 + AT_rich Low_complexity Low_complexity 1 34 0 262 275 2 0 chr1 205700524 205700601 -76493063 + L1MC4a LINE L1 2927 3004 -3142 512 132 11 0 chr1 205700607 205700698 -76492966 + MLT2B1 LTR ERVL 1 92 -423 1056 167 11 22 chr1 205700698 205700878 -76492786 - AluJb SINE Alu -1 311 134 1991 160 0 3 chr1 205700878 205701178 -76492486 - AluSx SINE Alu -7 305 7 1102 263 81 74 chr1 205701182 205701679 -76491985 + MLT2B1 LTR ERVL 85 552 -2 739 280 38 69 chr1 205701682 205701982 -76491682 + L1MC4a LINE L1 3007 3294 -2852 1452 172 35 19 chr1 205701982 205702243 -76491421 + AluJo SINE Alu 41 305 -7 739 280 38 69 chr1 205702243 205702335 -76491329 + L1MC4a LINE L1 3294 3387 -2759 2168 208 38 21 chr1 205702357 205702882 -76490782 + MER77 LTR ERV1 54 587 -18 394 331 73 25 chr1 205703090 205703489 -76490175 + L1MC4a LINE L1 4741 5158 -988 1314 249 54 96 chr1 205703549 205704138 -76489526 + L1MC4a LINE L1 5254 5810 -1998 1690 89 138 12 chr1 205704138 205704406 -76489258 - AluSg1 SINE Alu 0 299 1 1314 249 54 96 chr1 205704406 205704534 -76489130 + L1MC4a LINE L1 5810 5942 -1866 596 281 61 30 chr1 205704570 205704734 -76488930 - MIR SINE MIR -91 171 3 22 35 0 0 chr1 205704862 205704891 -76488773 + AT_rich Low_complexity Low_complexity 1 29 0 245 273 7 33 chr1 205705498 205705648 -76488016 + (CAA)n Simple_repeat Simple_repeat 1 146 0 2498 180 32 12 chr1 205706054 205706549 -76487115 + LTR22 LTR ERVK 1 505 -4 1566 138 37 37 chr1 205708017 205708036 -76485628 - Tigger2a DNA MER2_type -2411 297 279 1796 189 24 0 chr1 205708036 205708332 -76485332 - AluJb SINE Alu -9 303 1 1566 138 37 37 chr1 205708332 205708609 -76485055 - Tigger2a DNA MER2_type -2428 280 1 1633 216 27 32 chr1 205708838 205709209 -76484455 - MLT1A2 LTR MaLR -2 372 4 292 228 47 60 chr1 205709488 205709637 -76484027 - L1MEd LINE L1 -4700 1431 1285 388 251 83 83 chr1 205709809 205710079 -76483585 - L1MEd LINE L1 -4914 1205 933 1966 168 0 0 chr1 205710079 205710371 -76483293 - AluJo SINE Alu -20 292 1 388 251 83 83 chr1 205710371 205710463 -76483201 - L1MEd LINE L1 -5185 934 843 619 254 77 11 chr1 205710524 205710614 -76483050 + L2 LINE L2 3119 3202 -111 2208 127 38 24 chr1 205710614 205710984 -76482680 - THE1C LTR MaLR 0 375 1 619 254 77 11 chr1 205710984 205711074 -76482590 + L2 LINE L2 3202 3311 -2 1733 129 24 0 chr1 205711669 205711917 -76481747 - AluSq SINE Alu -59 254 1 218 330 179 0 chr1 205712116 205712228 -76481436 - MIR3 SINE MIR -17 191 60 26 0 0 0 chr1 205712695 205712721 -76480943 + AT_rich Low_complexity Low_complexity 1 26 0 2058 152 16 0 chr1 205712824 205713127 -76480537 + AluJb SINE Alu 1 308 -4 1520 152 34 0 chr1 205713130 205713426 -76480238 - MER33 DNA MER1_type -14 310 5 2922 159 114 35 chr1 205713469 205714006 -76479658 + MER21B LTR ERV1 211 803 -60 1812 141 58 4 chr1 205714006 205714282 -76479382 - AluSx SINE Alu -21 291 1 2922 159 114 35 chr1 205714282 205714349 -76479315 + MER21B LTR ERV1 803 863 0 518 231 74 0 chr1 205715743 205715864 -76477800 + MIR SINE MIR 12 141 -121 1172 203 23 0 chr1 205716102 205716319 -76477345 + MER58A DNA MER1_type 2 223 -1 1473 206 111 26 chr1 205716353 205716775 -76476889 + MLT1C LTR MaLR 10 467 0 3541 131 62 68 chr1 205716879 205717611 -76476053 - LTR8A LTR ERV1 0 727 1 2867 164 76 52 chr1 205717993 205718701 -76474963 + LTR8A LTR ERV1 1 725 -2 205 253 87 21 chr1 205719011 205719132 -76474532 - MIR SINE MIR -62 146 18 3624 150 44 7 chr1 205719711 205720198 -76473466 + MER41B LTR ERV1 1 517 -118 2180 116 26 0 chr1 205720198 205720501 -76473163 - AluSx SINE Alu -1 311 1 3624 150 44 7 chr1 205720501 205720625 -76473039 + MER41B LTR ERV1 517 635 0 1433 191 143 50 chr1 205720666 205721122 -76472542 + MLT1D LTR MaLR 1 498 -7 668 260 162 27 chr1 205721485 205722005 -76471659 - L2 LINE L2 -21 3292 2686 1894 194 34 25 chr1 205722276 205722448 -76471216 + MLT1C LTR MaLR 11 180 -287 2365 94 20 0 chr1 205722448 205722746 -76470918 + AluSx SINE Alu 1 304 -8 1894 194 34 25 chr1 205722746 205723017 -76470647 + MLT1C LTR MaLR 180 458 -9 2648 183 24 0 chr1 205723486 205723977 -76469687 + L1MB5 LINE L1 5672 6174 0 430 236 207 19 chr1 205723985 205724299 -76469365 - L2 LINE L2 -121 3192 2820 183 186 51 34 chr1 205724342 205724401 -76469263 - L2 LINE L2 -640 2674 2615 1815 143 22 49 chr1 205724762 205724810 -76468854 + MLT2C1 LTR ERVL 5 53 -462 2367 79 3 25 chr1 205724810 205725125 -76468539 - AluY SINE Alu -1 310 3 1815 143 22 49 chr1 205725125 205725446 -76468218 + MLT2C1 LTR ERVL 53 475 -40 251 129 0 6 chr1 205725486 205725533 -76468131 + MLT2C1 LTR ERVL 357 396 -1 418 293 27 20 chr1 205725535 205725682 -76467982 + L2 LINE L2 3162 3309 -4 2193 119 23 0 chr1 205727014 205727317 -76466347 - AluSg SINE Alu 0 310 1 4067 139 11 42 chr1 205727365 205728099 -76465565 + MER50 LTR ERV1 1 711 -23 743 274 98 7 chr1 205728112 205728419 -76465245 + MLT1J2 LTR MaLR 115 449 -1 741 248 64 15 chr1 205728681 205728883 -76464781 - MIR SINE MIR -41 221 10 2262 116 0 0 chr1 205729365 205729657 -76464007 - AluSq SINE Alu -21 292 1 336 228 109 10 chr1 205729703 205729804 -76463860 - L2 LINE L2 -12 3301 3191 546 88 0 0 chr1 205730169 205730237 -76463427 + AluSp/q SINE Alu 170 237 -76 217 299 39 0 chr1 205730824 205730901 -76462763 - L2 LINE L2 -5 3267 3188 264 186 102 0 chr1 205730973 205731032 -76462632 + L2 LINE L2 3246 3310 -3 302 293 53 38 chr1 205731150 205731283 -76462381 - L2 LINE L2 -176 3096 2962 365 263 94 25 chr1 205731569 205731729 -76461935 + L2 LINE L2 2585 2755 -559 560 186 21 0 chr1 205731755 205731852 -76461812 - FRAM SINE Alu -11 165 67 6538 47 7 3 chr1 205731852 205732823 -76460841 - L1PA7 LINE L1 -57 6097 5124 182 328 33 0 chr1 205733478 205733539 -76460125 + L2 LINE L2 3247 3309 -4 2242 91 3 0 chr1 205734022 205734351 -76459313 + AluSc SINE Alu 1 309 0 268 237 150 45 chr1 205735250 205735378 -76458286 - MIR SINE MIR -27 181 41 485 193 373 0 chr1 205736224 205736374 -76457290 - MIR SINE MIR -21 241 36 349 213 148 33 chr1 205736477 205736599 -76457065 - L2 LINE L2 0 3272 3137 318 299 90 14 chr1 205736987 205737131 -76456533 + MER63A DNA MER1_type 56 210 0 447 240 56 16 chr1 205737135 205737260 -76456404 + MIR SINE MIR 68 197 -65 599 294 29 0 chr1 205737317 205737453 -76456211 + L2 LINE L2 3116 3255 -17 756 99 0 0 chr1 205738570 205738681 -76454983 - AluSg/x SINE Alu 0 309 199 239 255 0 0 chr1 205738796 205738847 -76454817 - L2 LINE L2 -37 3276 3226 2300 120 22 33 chr1 205739429 205739795 -76453869 + THE1B LTR MaLR 1 362 -2 11397 85 14 6 chr1 205739797 205741359 -76452305 + THE1B-int LTR MaLR 1 1574 -6 2359 128 19 25 chr1 205741364 205741730 -76451934 + THE1B LTR MaLR 1 364 0 1751 133 70 7 chr1 205741753 205742039 -76451625 + AluJo SINE Alu 1 304 -8 323 228 38 13 chr1 205742202 205742281 -76451383 + MIR SINE MIR 175 255 -7 1266 220 46 15 chr1 205742342 205742669 -76450995 + MER46C DNA MER2_type 2 338 0 26909 64 9 7 chr1 205742676 205742687 -76450977 + L1PA6 LINE L1 1590 1599 -4835 4657 26 0 0 chr1 205742687 205743217 -76450447 + L1PA3 LINE L1 5626 6155 0 26909 64 9 7 chr1 205743217 205747513 -76446151 + L1PA6 LINE L1 1599 6429 -5 1989 102 64 0 chr1 205747680 205747963 -76445701 + AluSx SINE Alu 1 301 -11 287 203 78 0 chr1 205747985 205748049 -76445615 + MIR SINE MIR 98 166 -96 * 853 258 42 33 chr1 205748029 205748269 -76445395 - MIR SINE MIR 0 262 21 274 311 129 23 chr1 205748509 205748641 -76445023 + MIR SINE MIR 69 214 -48 192 135 0 0 chr1 205749269 205749306 -76444358 + (TG)n Simple_repeat Simple_repeat 2 38 0 1263 277 153 14 chr1 205750077 205750637 -76443027 - L2 LINE L2 -1 3312 2662 368 239 95 68 chr1 205750798 205751061 -76442603 + L1ME4a LINE L1 5851 6120 -1 1965 117 30 0 chr1 205751075 205751373 -76442291 - AluSx SINE Alu -5 307 1 378 228 30 20 chr1 205753426 205753527 -76440137 - MER5A DNA MER1_type -81 108 7 280 269 200 25 chr1 205753541 205753701 -76439963 + MER5B DNA MER1_type 1 188 -1 329 226 117 51 chr1 205755164 205755268 -76438396 + MIR3 SINE MIR 8 125 -83 1763 155 38 0 chr1 205755268 205755558 -76438106 - AluJb SINE Alu -11 301 1 329 226 117 51 chr1 205755558 205755590 -76438074 + MIR3 SINE MIR 125 153 -55 600 231 25 0 chr1 205755707 205755828 -76437836 + AluJo SINE Alu 14 137 -175 375 302 89 0 chr1 205755831 205756010 -76437654 + MER102b DNA MER1_type 129 323 -18 1754 194 82 25 chr1 205756011 205756448 -76437216 - MLT1C LTR MaLR 0 467 6 1068 155 6 0 chr1 205756511 205756685 -76436979 - FRAM SINE Alu -2 174 1 326 273 112 100 chr1 205756988 205757237 -76436427 + L2 LINE L2 3019 3270 -2 405 197 0 0 chr1 205758184 205758260 -76435404 + L2 LINE L2 3196 3271 -1 247 325 0 24 chr1 205758275 205758358 -76435306 + L2 LINE L2 3190 3270 -43 232 162 0 0 chr1 205758410 205758447 -76435217 - MIR SINE MIR -57 151 115 357 269 46 19 chr1 205759051 205759159 -76434505 + MIR3 SINE MIR 82 192 -16 263 219 0 47 chr1 205759173 205759237 -76434427 - L2 LINE L2 -43 3270 3210 460 169 0 0 chr1 205759271 205759348 -76434316 - L2 LINE L2 -1 3271 3195 2148 129 0 0 chr1 205760028 205760339 -76433325 + AluSx SINE Alu 1 311 -1 688 273 61 76 chr1 205760397 205760785 -76432879 + L2 LINE L2 2857 3238 -75 2180 110 7 0 chr1 205760785 205761094 -76432570 - AluSx SINE Alu -1 311 1 688 273 61 76 chr1 205761094 205761163 -76432501 + L2 LINE L2 3238 3307 -6 1684 168 30 0 chr1 205761597 205761894 -76431770 - AluJb SINE Alu -6 306 1 2181 105 0 0 chr1 205762827 205763131 -76430533 + AluSp SINE Alu 1 304 -9 266 207 61 0 chr1 205764914 205764996 -76428668 + MER69 DNA AcHobo 2381 2467 -59 189 260 0 60 chr1 205765339 205765389 -76428275 + L2 LINE L2 3175 3221 -92 816 288 94 36 chr1 205765767 205766376 -76427288 + L2 LINE L2 2666 3311 -2 340 291 48 0 chr1 205767509 205767612 -76426052 - MIR SINE MIR -115 147 40 914 206 140 77 chr1 205768041 205768420 -76425244 + MLT1H LTR MaLR 1 403 -146 195 129 0 0 chr1 205769181 205769212 -76424452 + (TG)n Simple_repeat Simple_repeat 1 31 0 267 31 0 0 chr1 205769240 205769272 -76424392 + (TG)n Simple_repeat Simple_repeat 2 33 0 520 189 170 20 chr1 205769694 205769847 -76423817 + MER5B DNA MER1_type 3 178 0 1683 227 29 50 chr1 205769947 205770463 -76423201 + MLT1D LTR MaLR 1 505 0 232 337 0 11 chr1 205770926 205771015 -76422649 - MER5A DNA MER1_type -101 88 1 6950 9 0 0 chr1 205771132 205771896 -76421768 - L1PA2 LINE L1 0 6155 5392 * 6952 30 0 0 chr1 205771895 205772719 -76420945 + L1PA2 LINE L1 4549 5372 -774 2214 108 3 0 chr1 205772721 205773026 -76420638 - AluSg SINE Alu 0 310 5 1203 227 84 27 chr1 205773067 205773542 -76420122 - HAL1 LINE L1 0 2507 2006 911 311 43 14 chr1 205773543 205773894 -76419770 + MLT1J LTR MaLR 1 361 -150 809 171 24 53 chr1 205773990 205774160 -76419504 + MER69A DNA AcHobo 5 169 -8 522 282 151 45 chr1 205774180 205774584 -76419080 + MLT1J2 LTR MaLR 4 450 0 788 285 91 25 chr1 205774584 205774945 -76418719 - HAL1 LINE L1 -498 2009 1625 2278 101 0 0 chr1 205775038 205775334 -76418330 - AluSx SINE Alu -16 296 1 819 150 16 0 chr1 205775338 205775465 -76418199 - FLAM_C SINE Alu -13 130 2 692 259 110 56 chr1 205775467 205775895 -76417769 - HAL1 LINE L1 -1440 1067 617 713 270 51 36 chr1 205775930 205776304 -76417360 + LTR16A LTR ERVL 31 450 0 738 313 61 4 chr1 205776312 205776574 -76417090 + HERV16 LTR ERVL 10 286 -4710 2021 208 46 27 chr1 205776575 205777052 -76416612 - MLT1D LTR MaLR -7 498 13 2187 270 107 40 chr1 205777061 205777437 -76416227 + HERV16 LTR ERVL 275 625 -4371 1888 114 30 0 chr1 205777437 205777731 -76415933 + AluSc SINE Alu 1 302 0 2187 270 107 40 chr1 205777731 205778168 -76415496 + HERV16 LTR ERVL 625 1143 -3853 537 133 0 0 chr1 205778362 205778445 -76415219 + AluS SINE Alu 2 84 -228 490 325 64 22 chr1 205778446 205778741 -76414923 + HERV16 LTR ERVL 1361 1679 -3317 5707 153 34 12 chr1 205778750 205780211 -76413453 + L1MA6 LINE L1 4805 6300 0 902 282 72 14 chr1 205780243 205780534 -76413130 + HERV16 LTR ERVL 1660 1967 -3029 384 264 182 0 chr1 205780534 205780682 -76412982 + L2 LINE L2 2839 3013 -300 * 423 248 19 81 chr1 205780667 205780828 -76412836 + MIR SINE MIR 102 252 -10 184 342 40 0 chr1 205781074 205781150 -76412514 + MER5B DNA MER1_type 64 142 -36 1029 170 12 0 chr1 205781153 205781324 -76412340 + FAM SINE Alu 1 173 -2 283 278 67 0 chr1 205782606 205782696 -76410968 + MIR3 SINE MIR 10 105 -103 747 265 180 25 chr1 205782699 205783137 -76410527 - LTR33A LTR ERVL -15 508 3 922 304 94 17 chr1 205783639 205784119 -76409545 - LTR33 LTR ERVL -2 519 3 300 346 81 11 chr1 205784371 205784556 -76409108 + MIR SINE MIR 16 213 -49 2124 78 13 19 chr1 205785421 205785728 -76407936 - L1PA13 LINE L1 -8 6155 5851 1583 99 0 0 chr1 205785933 205786145 -76407519 - AluSq SINE Alu -16 297 86 545 280 63 6 chr1 205786328 205786503 -76407161 + MIR SINE MIR 53 237 -25 239 322 20 0 chr1 205786658 205786807 -76406857 - L2 LINE L2 -1208 2106 1955 266 280 101 65 chr1 205786866 205787034 -76406630 + MIR3 SINE MIR 34 207 -1 1323 114 0 5 chr1 205787045 205787251 -76406413 - AluSg/x SINE Alu 0 305 101 224 324 198 16 chr1 205787435 205787617 -76406047 - MIR SINE MIR -8 254 40 271 374 58 43 chr1 205787729 205787868 -76405796 + L2 LINE L2 3116 3256 -16 227 379 57 0 chr1 205787867 205787991 -76405673 - L2 LINE L2 -38 3234 3104 * 7073 45 7 1 chr1 205788193 205789053 -76404611 - L1PA5 LINE L1 -1 6153 5289 294 95 0 0 chr1 205789074 205789116 -76404548 + (CA)n Simple_repeat Simple_repeat 2 43 0 821 172 7 0 chr1 205789233 205789378 -76404286 - AluJb SINE Alu -30 282 137 22 0 0 0 chr1 205789416 205789438 -76404226 + AT_rich Low_complexity Low_complexity 1 22 0 379 208 9 9 chr1 205789460 205789566 -76404098 + CT-rich Low_complexity Low_complexity 3 108 0 857 243 27 0 chr1 205790166 205790388 -76403276 - MER63 DNA MER1_type -48 1012 785 861 269 111 15 chr1 205790405 205790729 -76402935 - MLT1J LTR MaLR -150 361 7 202 286 29 43 chr1 205791032 205791102 -76402562 - L2 LINE L2 -54 3218 3150 335 359 51 0 chr1 205791570 205791687 -76401977 + MIR SINE MIR 4 126 -136 5489 112 110 34 chr1 205791757 205792844 -76400820 + MER11A LTR ERVK 1 1266 0 5174 97 8 4 chr1 205792844 205793586 -76400078 + HERVK11 LTR ERVK 1 745 -7208 221 248 0 57 chr1 205844218 205844359 -76349305 + (CATCC)n Simple_repeat Simple_repeat 4 136 0 318 238 0 55 chr1 205844467 205844631 -76349033 + (CATCC)n Simple_repeat Simple_repeat 2 156 0 257 255 0 53 chr1 205844681 205844869 -76348795 + (CATCC)n Simple_repeat Simple_repeat 3 180 0 216 337 189 16 chr1 205845275 205845465 -76348199 + MIR SINE MIR 20 242 -20 247 303 0 0 chr1 205845822 205845888 -76347776 + L2 LINE L2 2722 2787 -527 181 281 124 11 chr1 205845889 205845978 -76347686 + L2 LINE L2 2141 2239 -1075 2164 98 16 3 chr1 205845998 205846304 -76347360 - AluSq SINE Alu -1 312 3 341 233 8 100 chr1 205846569 205846689 -76346975 + MLT1G LTR MaLR 20 128 -462 682 313 127 22 chr1 205846769 205847171 -76346493 + L2 LINE L2 2829 3272 0 877 311 134 46 chr1 205849182 205849751 -76343913 + L3 LINE CR1 911 1529 -48 254 244 111 59 chr1 205850390 205850525 -76343139 + L2 LINE L2 3169 3310 -3 396 237 0 43 chr1 205851444 205851537 -76342127 + L1MC4 LINE L1 6614 6702 -1340 300 203 0 63 chr1 205851485 205851564 -76342100 - L1MCa LINE L1 -4358 2068 1995 * 341 312 14 80 chr1 205851818 205851956 -76341708 + MIR SINE MIR 78 206 -56 815 291 40 35 chr1 205852783 205853237 -76340427 - LTR16A1 LTR ERVL 0 457 2 898 305 32 49 chr1 205853423 205853833 -76339831 + L2 LINE L2 2907 3309 -4 1612 178 7 19 chr1 205854530 205854839 -76338825 - AluJo SINE Alu -7 305 1 298 310 62 41 chr1 205856029 205856174 -76337490 + MIR SINE MIR 52 199 -63 213 293 91 10 chr1 205856214 205856313 -76337351 - MIR SINE MIR -45 217 111 373 295 43 20 chr1 205857308 205857610 -76336054 + AluSx SINE Alu 1 302 0 378 173 0 0 chr1 205857770 205857822 -76335842 + G-rich Low_complexity Low_complexity 1 52 0 745 186 119 42 chr1 205858700 205858893 -76334771 - MER3 DNA MER1_type -1 208 1 342 209 0 35 chr1 205859263 205859349 -76334315 + L2 LINE L2 3231 3313 0 569 212 0 27 chr1 205859521 205859705 -76333959 + GA-rich Low_complexity Low_complexity 2 180 0 1111 36 15 0 chr1 205860521 205860658 -76333006 - L1PA3 LINE L1 -3 6152 6014 300 300 22 0 chr1 205860823 205860913 -76332751 - MIR SINE MIR -66 142 51 1152 230 85 6 chr1 205861188 205861302 -76332362 - MLT1J2 LTR MaLR -46 404 300 725 250 88 0 chr1 205861302 205861494 -76332170 - MER3 DNA MER1_type 0 209 1 1152 230 85 6 chr1 205861494 205861733 -76331931 - MLT1J2 LTR MaLR -150 300 1 776 93 0 19 chr1 205862821 205862928 -76330736 - AluSg1 SINE Alu -170 139 35 297 238 305 0 chr1 205862938 205863089 -76330575 - MIR SINE MIR -55 207 11 482 328 52 23 chr1 205863145 205863319 -76330345 - MIR SINE MIR -75 187 9 475 294 16 8 chr1 205863746 205863872 -76329792 + MER5A DNA MER1_type 57 183 -6 894 172 13 7 chr1 205865347 205865498 -76328166 + MER58B DNA MER1_type 169 320 -21 413 197 53 0 chr1 205865493 205865569 -76328095 + MER58B DNA MER1_type 262 341 0 * 718 235 41 6 chr1 205865588 205865758 -76327906 - MLT1I LTR MaLR -233 176 1 214 345 48 0 chr1 205865758 205865842 -76327822 - L2 LINE L2 -27 3286 3199 458 313 61 14 chr1 205866955 205867102 -76326562 + MIR3 SINE MIR 16 169 -39 210 241 0 69 chr1 205867219 205867277 -76326387 + L2 LINE L2 3254 3307 -6 383 286 98 89 chr1 205867748 205867877 -76325787 + L2 LINE L2 2937 3063 -209 2225 107 0 0 chr1 205867877 205868175 -76325489 - AluSx SINE Alu -14 298 1 383 286 98 89 chr1 205868175 205868370 -76325294 + L2 LINE L2 3063 3264 -8 1664 161 28 0 chr1 205868555 205868841 -76324823 + AluJb SINE Alu 1 294 -18 241 259 82 12 chr1 205869066 205869151 -76324513 + L2 LINE L2 3153 3243 -70 239 253 92 0 chr1 205869194 205869281 -76324383 - L2 LINE L2 -9 3304 3210 208 241 19 19 chr1 205870403 205870457 -76323207 - L2 LINE L2 0 3272 3219 247 327 13 60 chr1 205870833 205870983 -76322681 - L2 LINE L2 -542 2772 2630 922 263 19 27 chr1 205870997 205871256 -76322408 - MIR SINE MIR 0 262 6 3605 246 34 7 chr1 205871550 205872479 -76321185 + L1ME1 LINE L1 27 981 -5415 861 251 60 63 chr1 205872501 205872811 -76320853 + L1ME1 LINE L1 1130 1440 -4956 1805 201 37 3 chr1 205872811 205873164 -76320500 - MLT1A1 LTR MaLR 0 365 1 861 251 60 63 chr1 205873164 205873316 -76320348 + L1ME1 LINE L1 1440 1591 -4805 239 111 42 14 chr1 205873321 205873393 -76320271 + (TA)n Simple_repeat Simple_repeat 2 75 0 460 197 38 30 chr1 205873398 205873530 -76320134 + L1ME1 LINE L1 2043 2175 -4221 410 172 50 10 chr1 205873538 205873637 -76320027 + L1ME1 LINE L1 2271 2373 -4023 * 683 199 26 16 chr1 205873635 205873826 -76319838 + L1ME1 LINE L1 3070 3262 -2953 385 185 0 92 chr1 205873806 205873925 -76319739 + L1ME1 LINE L1 3726 3833 -2382 * 2500 238 13 47 chr1 205873899 205874245 -76319419 + L1ME1 LINE L1 5404 5760 -475 2068 93 14 10 chr1 205874245 205874536 -76319128 + AluSq SINE Alu 6 297 -16 2500 238 13 47 chr1 205874536 205874955 -76318709 + L1ME1 LINE L1 5760 6143 -92 544 304 181 5 chr1 205875448 205875859 -76317805 - L2 LINE L2 -240 3073 2564 184 342 40 0 chr1 205876421 205876497 -76317167 + MER5B DNA MER1_type 64 142 -36 1029 170 12 0 chr1 205876500 205876671 -76316993 + FAM SINE Alu 1 173 -2 283 278 67 0 chr1 205877953 205878043 -76315621 + MIR3 SINE MIR 10 105 -103 747 265 180 25 chr1 205878046 205878484 -76315180 - LTR33A LTR ERVL -15 508 3 922 304 94 17 chr1 205878986 205879466 -76314198 - LTR33 LTR ERVL -2 519 3 300 346 81 11 chr1 205879718 205879903 -76313761 + MIR SINE MIR 16 213 -49 2124 78 13 19 chr1 205880768 205881075 -76312589 - L1PA13 LINE L1 -8 6155 5851 1583 99 0 0 chr1 205881280 205881492 -76312172 - AluSq SINE Alu -16 297 86 262 247 247 0 chr1 205881602 205881699 -76311965 - L2 LINE L2 -354 2960 2840 902 282 72 14 chr1 205881699 205881990 -76311674 - HERV16 LTR ERVL -3029 1967 1660 5707 153 34 12 chr1 205882022 205883483 -76310181 - L1MA6 LINE L1 0 6300 4805 490 325 64 22 chr1 205883492 205883787 -76309877 - HERV16 LTR ERVL -3317 1679 1361 537 133 0 0 chr1 205883788 205883871 -76309793 - AluSq SINE Alu -228 84 2 2187 270 107 40 chr1 205884065 205884502 -76309162 - HERV16 LTR ERVL -3853 1143 736 1887 114 30 0 chr1 205884502 205884796 -76308868 - AluSc SINE Alu 0 302 1 2187 270 107 40 chr1 205884796 205885172 -76308492 - HERV16 LTR ERVL -4260 736 275 2015 202 50 29 chr1 205885181 205885657 -76308007 + MLT1D LTR MaLR 13 498 -7 738 313 61 4 chr1 205885658 205885920 -76307744 - HERV16 LTR ERVL -4710 286 10 713 270 51 36 chr1 205885928 205886302 -76307362 - LTR16A LTR ERVL 0 450 31 692 259 110 56 chr1 205886337 205886765 -76306899 + HAL1 LINE L1 617 1067 -1440 819 150 16 0 chr1 205886767 205886894 -76306770 + FLAM_C SINE Alu 2 130 -13 2278 101 0 0 chr1 205886898 205887194 -76306470 + AluSx SINE Alu 1 296 -16 567 243 46 29 chr1 205887287 205887460 -76306204 + HAL1 LINE L1 1625 1800 -707 25 65 0 0 chr1 205887590 205887636 -76306028 + AT_rich Low_complexity Low_complexity 1 46 0 45146 41 3 0 chr1 205887636 205893766 -76299898 - L1PA4 LINE L1 -3 6152 3 673 96 0 0 chr1 205893844 205893927 -76299737 + AluS SINE Alu 2 84 -229 1004 218 47 88 chr1 205894333 205894763 -76298901 + MLT1A2 LTR MaLR 2 394 -2 1946 301 53 51 chr1 205894852 205896312 -76297352 + L1MEc LINE L1 246 1709 -4898 7293 133 5 7 chr1 205896324 205897764 -76295900 - L1MA1 LINE L1 0 6302 4869 281 207 14 0 chr1 205897763 205897835 -76295829 + L1MEc LINE L1 1516 1777 -4830 * 1660 112 26 4 chr1 205897866 205898133 -76295531 - L1MA8 LINE L1 0 6291 6019 1123 255 46 34 chr1 205898146 205898561 -76295103 + L1MEc LINE L1 1733 2152 -4455 965 224 5 0 chr1 205898588 205898780 -76294884 + AluJo SINE Alu 120 312 0 1874 203 99 42 chr1 205898781 205898911 -76294753 + L1MEc LINE L1 2151 2272 -4154 189 0 0 0 chr1 205898911 205898932 -76294732 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 222 37 0 0 chr1 205898931 205898958 -76294706 + (CA)n Simple_repeat Simple_repeat 1 27 0 1874 203 99 42 chr1 205898932 205899623 -76294041 + L1MEc LINE L1 2272 2949 -3477 1310 215 48 2 chr1 205899652 205900052 -76293612 + L1MEc LINE L1 3066 3483 -2943 * 3338 215 19 21 chr1 205900049 205900869 -76292795 + L1M4 LINE L1 4385 5203 -943 417 233 58 0 chr1 205901198 205901301 -76292363 - MIR SINE MIR -80 182 74 371 268 59 74 chr1 205901320 205901538 -76292126 - MIR SINE MIR -9 199 45 2919 164 58 27 chr1 205902530 205903114 -76290550 - L1MB7 LINE L1 -19 6165 5564 377 333 95 45 chr1 205903769 205904168 -76289496 + L2 LINE L2 2852 3270 -2 276 250 52 21 chr1 205904164 205904260 -76289404 - MIR3 SINE MIR -45 163 65 * 198 0 0 0 chr1 205906922 205906944 -76286720 + (CA)n Simple_repeat Simple_repeat 2 23 0 2030 135 0 0 chr1 205907651 205907965 -76285699 - AluSx SINE Alu 0 314 1 432 279 6 56 chr1 205907972 205908133 -76285531 - MIR SINE MIR -65 197 45 448 291 67 73 chr1 205908774 205909117 -76284547 + L2 LINE L2 2972 3312 -1 1864 131 4 0 chr1 205909237 205909504 -76284160 + AluSx SINE Alu 37 304 -8 1585 109 0 42 chr1 205911042 205911281 -76282383 - L1PA15 LINE L1 -2 6163 5935 6052 126 61 7 chr1 205911531 205912556 -76281108 - L1PA16 LINE L1 0 6166 5110 1395 182 11 48 chr1 205912556 205912825 -76280839 - AluJo SINE Alu -53 259 1 10960 188 11 49 chr1 205912825 205914063 -76279601 - L1P LINE L1 -979 5167 3884 180 0 0 0 chr1 205914063 205914083 -76279581 + (TA)n Simple_repeat Simple_repeat 2 21 0 10960 188 11 49 chr1 205914083 205914779 -76278885 - L1P LINE L1 -2262 3884 3347 2457 50 40 0 chr1 205914779 205915078 -76278586 - AluYa5 SINE Alu 0 311 1 10960 188 11 49 chr1 205915078 205915660 -76278004 - L1P LINE L1 -2799 3347 2745 1652 177 14 27 chr1 205915727 205916021 -76277643 - AluJo SINE Alu -22 290 1 351 102 17 34 chr1 205916600 205916659 -76277005 + MLT1A1 LTR MaLR 1 58 -307 600 237 5 96 chr1 205916757 205916976 -76276688 - MIR SINE MIR 0 262 64 22 99 0 0 chr1 205917178 205917249 -76276415 + AT_rich Low_complexity Low_complexity 1 71 0 463 326 45 0 chr1 205917249 205917381 -76276283 + L2 LINE L2 3134 3271 -1 279 231 16 70 chr1 205917778 205917964 -76275700 + (CACCT)n Simple_repeat Simple_repeat 2 177 0 * 352 242 0 65 chr1 205917874 205918060 -76275604 + (CATCC)n Simple_repeat Simple_repeat 4 177 0 356 309 48 0 chr1 205918087 205918255 -76275409 + C-rich Low_complexity Low_complexity 4 179 0 180 111 0 0 chr1 205918351 205918378 -76275286 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 420 259 103 51 chr1 205918396 205918691 -76274973 - L1ME4a LINE L1 -202 5919 5624 2298 123 0 0 chr1 205919470 205919770 -76273894 + AluSx SINE Alu 1 300 -12 214 125 0 0 chr1 205919801 205919841 -76273823 + MIR SINE MIR 81 120 -88 288 236 79 129 chr1 205920344 205920484 -76273180 - MER5B DNA MER1_type -45 133 1 1489 104 61 0 chr1 205920745 205920957 -76272707 - MER61E LTR ERV1 -4 565 341 285 163 0 20 chr1 205920979 205921028 -76272636 - MER61E LTR ERV1 -405 164 117 264 260 0 90 chr1 205921005 205921105 -76272559 - MER61E LTR ERV1 -380 189 99 * 535 181 24 39 chr1 205921108 205921235 -76272429 - LTR25 LTR ERV1 -438 356 232 369 256 83 83 chr1 205921202 205921358 -76272306 - MER61E LTR ERV1 -413 156 1 * 294 281 135 0 chr1 205921418 205921514 -76272150 + MIR SINE MIR 43 151 -111 21 0 0 0 chr1 205922932 205922953 -76270711 + AT_rich Low_complexity Low_complexity 1 21 0 263 48 0 0 chr1 205922983 205923025 -76270639 + L1PA2 LINE L1 6114 6155 0 549 234 24 115 chr1 205923211 205923371 -76270293 + MIR3 SINE MIR 10 148 -60 1203 200 83 10 chr1 205923371 205923671 -76269993 - MER33 DNA MER1_type 0 324 3 549 234 24 115 chr1 205923671 205923719 -76269945 + MIR3 SINE MIR 148 199 -9 857 254 46 23 chr1 205924076 205924383 -76269281 - L1ME4a LINE L1 0 6121 5808 665 230 105 15 chr1 205924641 205924841 -76268823 + MIR SINE MIR 22 239 -23 259 151 27 68 chr1 205924843 205924916 -76268748 - L1ME4a LINE L1 -340 5781 5712 417 300 178 41 chr1 205924932 205925426 -76268238 - L2 LINE L2 -12 3301 2722 423 208 10 40 chr1 205925434 205925535 -76268129 - MER63A DNA MER1_type 0 210 113 373 224 28 28 chr1 205925554 205925661 -76268003 - Tigger5 DNA MER2_type 0 2323 2217 300 204 0 0 chr1 205925647 205925701 -76267963 - Tigger5 DNA MER2_type -2268 55 2 * 374 85 0 0 chr1 205925736 205925783 -76267881 - MER63A DNA MER1_type -163 47 1 233 292 0 31 chr1 205925790 205925855 -76267809 - L2 LINE L2 -599 2715 2653 243 182 0 0 chr1 205925874 205925918 -76267746 - L1ME LINE L1 -453 5668 5625 230 275 101 9 chr1 205926038 205926086 -76267578 + L2 LINE L2 2947 2989 -324 189 0 0 0 chr1 205926086 205926107 -76267557 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 230 275 101 9 chr1 205926107 205926167 -76267497 + L2 LINE L2 2989 3065 -248 334 153 17 0 chr1 205926210 205926269 -76267395 + L2 LINE L2 3254 3313 0 5002 146 17 11 chr1 205926495 205927411 -76266253 + L1MA7 LINE L1 5193 6114 -177 336 341 68 0 chr1 205928238 205928370 -76265294 + MIR3 SINE MIR 61 201 -7 375 310 91 53 chr1 205928962 205929149 -76264515 + L3 LINE CR1 1170 1363 -214 21 0 0 0 chr1 205929189 205929210 -76264454 + AT_rich Low_complexity Low_complexity 1 21 0 2274 233 92 43 chr1 205929481 205930044 -76263620 - MLT1G1 LTR MaLR -3 592 2 360 0 0 0 chr1 205930044 205930084 -76263580 + (TG)n Simple_repeat Simple_repeat 1 40 0 709 290 80 86 chr1 205930258 205930924 -76262740 + L1MEd LINE L1 7 668 -5451 573 15 0 0 chr1 205930939 205931005 -76262659 + (CA)n Simple_repeat Simple_repeat 1 66 0 21 0 0 0 chr1 205932642 205932663 -76261001 + AT_rich Low_complexity Low_complexity 1 21 0 2185 122 0 0 chr1 205934626 205934979 -76258685 + AluSx SINE Alu 1 353 0 625 212 0 9 chr1 205935230 205935343 -76258321 - FRAM SINE Alu -30 146 35 786 197 60 32 chr1 205935636 205935854 -76257810 - L1MC5 LINE L1 -40 7921 7698 2067 215 66 73 chr1 205935866 205936620 -76257044 - L1MC5 LINE L1 -389 7572 6824 1000 271 137 50 chr1 205936623 205937222 -76256442 - L1ME LINE L1 -743 5403 4857 1183 43 0 14 chr1 205937222 205937362 -76256302 - MER85 DNA T2_type 0 139 2 1000 271 137 50 chr1 205937362 205937652 -76256012 - L1ME LINE L1 -1289 4857 4594 2040 114 13 23 chr1 205937652 205937951 -76255713 - AluSq SINE Alu -17 296 1 1000 271 137 50 chr1 205937951 205938522 -76255142 - L1ME LINE L1 -1552 4594 4010 770 219 47 90 chr1 205940070 205940303 -76253361 - MIR SINE MIR -30 232 10 323 241 23 11 chr1 205940368 205940455 -76253209 + MIR SINE MIR 23 110 -98 770 303 63 0 chr1 205940868 205941185 -76252479 - L2 LINE L2 -1179 2135 1799 180 227 68 45 chr1 205941239 205941327 -76252337 + L2 LINE L2 169 258 -3056 496 241 22 22 chr1 205941329 205941466 -76252198 - LTR45 LTR ERV1 0 525 389 3012 227 147 141 chr1 205941919 205943597 -76250067 + L2 LINE L2 237 2051 -1263 704 186 25 0 chr1 205943597 205943715 -76249949 - FLAM_A SINE Alu -3 139 19 3012 227 147 141 chr1 205943715 205944263 -76249401 + L2 LINE L2 2051 2594 -720 462 250 59 59 chr1 205944295 205944447 -76249217 - MIR SINE MIR -27 235 84 1069 283 121 38 chr1 205944691 205945137 -76248527 + L2 LINE L2 2829 3311 -2 296 280 32 21 chr1 205945925 205946018 -76247646 - MIR SINE MIR -50 212 119 188 186 186 57 chr1 205946061 205946131 -76247533 - MIR SINE MIR -1 261 183 546 287 107 0 chr1 205946291 205946441 -76247223 + L2 LINE L2 3102 3267 -5 204 40 0 0 chr1 205946442 205946467 -76247197 + (CAA)n Simple_repeat Simple_repeat 2 26 0 375 307 102 8 chr1 205946469 205946596 -76247068 - MIR3 SINE MIR -66 142 4 195 388 12 0 chr1 205946596 205946661 -76247003 + L2 LINE L2 3193 3258 -14 227 308 162 0 chr1 205946656 205946773 -76246891 + MIR SINE MIR 52 187 -75 1026 310 240 6 chr1 205946808 205947779 -76245885 + L2 LINE L2 2109 3309 -4 359 287 81 15 chr1 205948032 205948168 -76245496 + MIR SINE MIR 82 226 -36 194 298 0 0 chr1 205948732 205948779 -76244885 + MIR SINE MIR 216 262 0 263 254 16 0 chr1 205948796 205948859 -76244805 - MIR3 SINE MIR -46 162 99 261 0 0 0 chr1 205949105 205949134 -76244530 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr1 205949333 205949354 -76244310 + AT_rich Low_complexity Low_complexity 1 21 0 457 333 54 73 chr1 205951354 205951988 -76241676 + L2 LINE L2 2341 2975 -297 351 44 0 0 chr1 205951988 205952033 -76241631 + (CA)n Simple_repeat Simple_repeat 2 46 0 457 333 54 73 chr1 205952033 205952118 -76241546 + L2 LINE L2 2975 3060 -212 2182 138 128 13 chr1 205952144 205952528 -76241136 + MSTA LTR MaLR 1 428 0 657 324 40 24 chr1 205953972 205954222 -76239442 + MIR SINE MIR 3 256 -6 1763 216 116 61 chr1 205954288 205954881 -76238783 + MLT1E2 LTR MaLR 1 626 0 1648 167 10 23 chr1 205954910 205955215 -76238449 - AluJo SINE Alu -11 301 1 193 324 149 0 chr1 205957841 205957989 -76235675 + L2 LINE L2 2347 2516 -798 334 267 144 20 chr1 205958668 205958814 -76234850 + MIR SINE MIR 20 183 -79 293 336 19 19 chr1 205959289 205959393 -76234271 - MIR SINE MIR -113 149 46 1919 111 3 17 chr1 205961041 205961330 -76232334 + AluSc SINE Alu 1 285 -24 1594 141 12 77 chr1 205961470 205961797 -76231867 - AluJb SINE Alu -6 306 1 199 371 56 0 chr1 205962895 205962984 -76230680 - L2 LINE L2 -40 3232 3139 21 36 0 0 chr1 205963127 205963155 -76230509 + AT_rich Low_complexity Low_complexity 1 28 0 639 291 105 27 chr1 205963440 205963872 -76229792 - L1ME3A LINE L1 -287 5883 5416 2166 291 69 10 chr1 205964425 205965198 -76228466 - L2 LINE L2 -888 2426 1609 1213 142 0 10 chr1 205965370 205965567 -76228097 + AluSg/x SINE Alu 105 299 -10 304 226 161 0 chr1 205965568 205965661 -76228003 + MIR SINE MIR 155 262 0 598 212 31 98 chr1 205965663 205965860 -76227804 - MLT1J2 LTR MaLR -2 444 258 989 197 5 11 chr1 205965862 205966050 -76227614 - MER58A DNA MER1_type -1 223 37 630 234 69 66 chr1 205966069 205966293 -76227371 - MLT1J2 LTR MaLR -191 259 37 201 289 0 0 chr1 205966293 205966345 -76227319 + GA-rich Low_complexity Low_complexity 2 53 0 231 118 0 0 chr1 205967343 205967377 -76226287 - HAL1 LINE L1 -1052 1455 1422 474 272 94 73 chr1 205967790 205968243 -76225421 + MLT1L LTR MaLR 98 572 -16 449 285 33 80 chr1 205968642 205968916 -76224748 - MIR SINE MIR 0 262 2 374 247 143 3 chr1 205968975 205969115 -76224549 - MIR SINE MIR -59 149 18 212 313 30 30 chr1 205970453 205970520 -76223144 - L2 LINE L2 0 3272 3206 795 218 199 34 chr1 205970677 205971111 -76222553 - L2 LINE L2 -202 3111 2607 402 238 63 121 chr1 205972283 205972489 -76221175 - L3 LINE CR1 -30 1547 1354 625 231 21 14 chr1 205973413 205973556 -76220108 + MIR SINE MIR 53 196 -66 1919 91 12 0 chr1 205974363 205974617 -76219047 + AluSx SINE Alu 3 259 -53 4493 218 60 83 chr1 205975255 205975582 -76218082 + L2 LINE L2 1581 1914 -1399 1708 213 116 49 chr1 205975582 205976090 -76217574 + MLT1F LTR MaLR 1 542 0 4493 218 60 83 chr1 205976090 205977546 -76216118 + L2 LINE L2 1914 3313 0 260 237 40 26 chr1 205977541 205977617 -76216047 - MIR SINE MIR -67 195 119 * 343 208 421 6 chr1 205977624 205977783 -76215881 - MIR SINE MIR -6 256 32 1869 146 3 3 chr1 205978201 205978503 -76215161 + AluJb SINE Alu 1 302 -10 887 255 69 4 chr1 205978570 205978801 -76214863 - MIR SINE MIR 0 262 17 286 200 46 0 chr1 205979590 205979655 -76214009 - L2 LINE L2 -214 3058 2991 279 0 0 0 chr1 205979978 205980009 -76213655 + (CA)n Simple_repeat Simple_repeat 2 32 0 387 83 0 0 chr1 205980009 205980069 -76213595 + (GA)n Simple_repeat Simple_repeat 1 60 0 764 272 161 20 chr1 205980234 205980638 -76213026 + LTR33A LTR ERVL 63 523 0 700 294 66 41 chr1 205980638 205981032 -76212632 - L2 LINE L2 -559 2755 2352 305 47 23 0 chr1 205981611 205981654 -76212010 + (TAAA)n Simple_repeat Simple_repeat 4 47 0 3084 217 28 14 chr1 205982430 205982976 -76210688 - MER82 DNA MER2_type 0 653 95 2212 122 20 37 chr1 205982976 205983054 -76210610 + MER7A DNA MER2_type 1 79 -2959 2166 97 3 10 chr1 205983054 205983352 -76210312 - AluSp SINE Alu -17 296 1 2212 122 20 37 chr1 205983352 205983627 -76210037 + MER7A DNA MER2_type 79 346 0 3084 217 28 14 chr1 205983627 205983715 -76209949 - MER82 DNA MER2_type -558 95 10 430 359 77 20 chr1 205983889 205984137 -76209527 + L3 LINE CR1 1192 1453 -124 519 257 20 7 chr1 205984648 205984800 -76208864 - L1M4 LINE L1 -1777 4369 4216 * 2241 256 43 45 chr1 205984792 205985628 -76208036 - L1ME LINE L1 -5231 839 6 2095 123 40 9 chr1 205985640 205985990 -76207674 - MER46B DNA MER2_type 0 236 1 505 311 0 0 chr1 205987552 205987671 -76205993 - MIR3 SINE MIR -47 161 43 23 54 0 0 chr1 205987715 205987752 -76205912 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr1 205987788 205987814 -76205850 + AT_rich Low_complexity Low_complexity 1 26 0 347 154 77 33 chr1 205987899 205987990 -76205674 - L1MA8 LINE L1 -2 6289 6195 309 114 41 0 chr1 205988752 205988824 -76204840 - MLT1H LTR MaLR -26 523 287 505 253 25 31 chr1 205988991 205989153 -76204511 - MLT1H LTR MaLR -381 168 8 3475 133 15 23 chr1 205989260 205989860 -76203804 + L1MB3 LINE L1 5574 6168 -15 1914 129 0 3 chr1 205990846 205991133 -76202531 - AluSg SINE Alu -13 297 12 780 250 71 14 chr1 205992091 205992303 -76201361 - MIR SINE MIR -10 252 29 729 146 9 0 chr1 205992374 205992484 -76201180 - MLT1B LTR MaLR -14 376 266 777 161 8 0 chr1 205992486 205992610 -76201054 + MLT1A1 LTR MaLR 241 365 0 461 17 17 0 chr1 205993164 205993222 -76200442 + (CA)n Simple_repeat Simple_repeat 2 60 0 336 311 33 99 chr1 205994952 205995254 -76198410 - L2 LINE L2 -52 3220 2939 237 343 0 14 chr1 205995305 205995451 -76198213 + GA-rich Low_complexity Low_complexity 1 144 0 501 296 35 6 chr1 205995451 205995623 -76198041 - MIR3 SINE MIR 0 208 32 216 273 36 0 chr1 205995798 205995853 -76197811 + CT-rich Low_complexity Low_complexity 2 58 0 420 20 0 0 chr1 205996699 205996748 -76196916 + (TG)n Simple_repeat Simple_repeat 2 50 0 247 291 0 23 chr1 205997534 205997620 -76196044 + CT-rich Low_complexity Low_complexity 3 86 0 22 56 0 0 chr1 205998363 205998399 -76195265 + GC_rich Low_complexity Low_complexity 1 36 0 188 229 0 21 chr1 205998551 205998599 -76195065 - L2 LINE L2 -1863 1451 1405 202 359 0 17 chr1 205998677 205998794 -76194870 + C-rich Low_complexity Low_complexity 4 118 0 318 278 105 23 chr1 206000082 206000215 -76193449 + L3b LINE CR1 1298 1441 -142 328 248 90 83 chr1 206000363 206000496 -76193168 + MER94 DNA DNA 1 134 0 881 220 55 32 chr1 206001189 206001407 -76192257 - MIR SINE MIR -5 257 35 2417 151 31 31 chr1 206001601 206002026 -76191638 - MSTB1 LTR MaLR -1 431 7 344 258 86 18 chr1 206002514 206002668 -76190996 + MIR3 SINE MIR 2 168 -40 181 319 116 0 chr1 206004090 206004159 -76189505 + MIR SINE MIR 46 122 -86 212 259 19 0 chr1 206004269 206004323 -76189341 + CT-rich Low_complexity Low_complexity 5 59 0 624 312 57 24 chr1 206004847 206005145 -76188519 - L2 LINE L2 -1 3312 3005 695 189 145 0 chr1 206006179 206006338 -76187326 + MER5A DNA MER1_type 8 189 0 249 0 0 115 chr1 206006387 206006439 -76187225 + (TTTTTA)n Simple_repeat Simple_repeat 3 48 0 246 293 217 9 chr1 206006920 206007026 -76186638 - MIR SINE MIR -87 175 48 675 310 46 26 chr1 206007362 206007665 -76185999 + L2 LINE L2 2189 2497 -817 244 301 43 43 chr1 206008405 206008498 -76185166 + L2 LINE L2 3164 3256 -16 205 129 0 0 chr1 206008592 206008623 -76185041 + L2 LINE L2 2194 2224 -1090 705 239 151 65 chr1 206008633 206008922 -76184742 - MLT1H LTR MaLR 0 549 215 2297 148 20 0 chr1 206008922 206009280 -76184384 - MLT1A1 LTR MaLR 0 365 1 705 239 151 65 chr1 206009280 206009387 -76184277 - MLT1H LTR MaLR -334 215 119 742 272 74 18 chr1 206009444 206009727 -76183937 - LTR16B LTR ERVL 0 464 166 1362 311 94 34 chr1 206009776 206010792 -76182872 + L2 LINE L2 2227 3309 -4 416 268 71 8 chr1 206011616 206011743 -76181921 + MIR SINE MIR 59 193 -69 1942 225 53 36 chr1 206012030 206012068 -76181596 - MLT2B2 LTR ERVL 0 515 479 243 0 0 0 chr1 206012068 206012095 -76181569 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 1942 225 53 36 chr1 206012095 206012562 -76181102 - MLT2B2 LTR ERVL -36 479 1 1168 155 0 0 chr1 206012632 206012819 -76180845 - L1P LINE L1 -1190 4956 4770 3422 74 0 0 chr1 206012819 206013250 -76180414 + L1PA11 LINE L1 5742 6173 -1 246 241 35 0 chr1 206013601 206013659 -76180005 - Charlie4 DNA MER1_type -4 1957 1898 1181 191 28 0 chr1 206014222 206014437 -76179227 - MER58A DNA MER1_type -3 221 1 392 146 23 115 chr1 206014440 206014502 -76179162 - L1MC5 LINE L1 -759 7202 7157 2084 120 7 7 chr1 206014502 206014810 -76178854 - AluSx SINE Alu -4 308 1 392 146 23 115 chr1 206014810 206014877 -76178787 - L1MC5 LINE L1 -804 7157 7085 3276 244 111 14 chr1 206014877 206016001 -76177663 + L2 LINE L2 1821 3058 -255 368 293 221 22 chr1 206016749 206016930 -76176734 - L3 LINE CR1 -3 1574 1358 329 336 80 0 chr1 206017033 206017146 -76176518 + L2 LINE L2 3149 3270 -2 738 273 114 9 chr1 206017148 206017368 -76176296 - MIR SINE MIR 0 262 20 1983 134 9 0 chr1 206017401 206017721 -76175943 - L1MB3 LINE L1 0 6183 5861 4955 176 27 22 chr1 206017901 206018014 -76175650 - L1MA9 LINE L1 -66 6246 6135 1657 46 9 19 chr1 206018014 206018230 -76175434 - AluY SINE Alu -16 295 82 4955 176 27 22 chr1 206018230 206018936 -76174728 - L1MA9 LINE L1 -177 6135 5434 2005 133 3 0 chr1 206018936 206019237 -76174427 - AluSx SINE Alu -10 302 1 4955 176 27 22 chr1 206019237 206020280 -76173384 - L1MA9 LINE L1 -878 5434 4387 763 218 61 15 chr1 206020279 206020673 -76172991 - L1MB3 LINE L1 -303 5880 5311 * 1150 314 81 46 chr1 206020675 206021521 -76172143 - L1MB3 LINE L1 -860 5286 4398 354 320 57 52 chr1 206021746 206021940 -76171724 - MIR SINE MIR -50 212 18 967 291 148 7 chr1 206022678 206023226 -76170438 - L2 LINE L2 0 3313 2686 825 206 121 51 chr1 206023226 206023483 -76170181 + L1ME3A LINE L1 5674 5948 -222 344 227 171 57 chr1 206023586 206023762 -76169902 + L1ME3A LINE L1 5971 6166 -4 598 247 22 55 chr1 206023858 206024093 -76169571 - L2 LINE L2 -756 2558 2332 2104 199 39 5 chr1 206024093 206024505 -76169159 + MSTB LTR MaLR 1 426 0 598 247 22 55 chr1 206024505 206024544 -76169120 - L2 LINE L2 -982 2332 2293 260 273 37 148 chr1 206024798 206025095 -76168569 + L2 LINE L2 2966 3229 -43 461 254 36 14 chr1 206026512 206026650 -76167014 - MIR3 SINE MIR -23 185 45 413 311 148 31 chr1 206027020 206027277 -76166387 + L2 LINE L2 2949 3235 -78 282 243 69 62 chr1 206029707 206029851 -76163813 - MIR3 SINE MIR -62 146 2 333 273 57 0 chr1 206030682 206030770 -76162894 + MIR SINE MIR 38 130 -78 240 170 0 57 chr1 206031261 206031314 -76162350 + CT-rich Low_complexity Low_complexity 3 52 0 800 251 116 54 chr1 206031661 206032031 -76161633 - L2 LINE L2 0 3313 2921 1794 209 88 31 chr1 206032313 206032791 -76160873 - MLT1D LTR MaLR 0 505 1 225 329 20 0 chr1 206033658 206033807 -76159857 - L2 LINE L2 -1208 2106 1955 266 280 101 65 chr1 206033866 206034034 -76159630 + MIR3 SINE MIR 34 207 -1 1323 114 0 5 chr1 206034045 206034251 -76159413 - AluSg/x SINE Alu 0 307 103 224 324 198 16 chr1 206034435 206034617 -76159047 - MIR SINE MIR -8 254 40 271 374 58 43 chr1 206034729 206034868 -76158796 + L2 LINE L2 3116 3256 -16 227 379 57 0 chr1 206034867 206034991 -76158673 - L2 LINE L2 -38 3234 3104 * 7224 46 1 0 chr1 206035193 206036062 -76157602 - L1PA5 LINE L1 -1 6153 5284 294 95 0 0 chr1 206036084 206036126 -76157538 + (CA)n Simple_repeat Simple_repeat 2 43 0 821 172 7 0 chr1 206036243 206036388 -76157276 - AluJb SINE Alu -30 282 137 22 0 0 0 chr1 206036426 206036448 -76157216 + AT_rich Low_complexity Low_complexity 1 22 0 379 208 9 9 chr1 206036470 206036576 -76157088 + CT-rich Low_complexity Low_complexity 3 108 0 857 243 27 0 chr1 206037176 206037398 -76156266 - MER63 DNA MER1_type -48 1014 787 861 269 111 15 chr1 206037415 206037739 -76155925 - MLT1J LTR MaLR -150 361 7 202 286 29 43 chr1 206038042 206038112 -76155552 - L2 LINE L2 -54 3218 3150 335 359 51 0 chr1 206038580 206038697 -76154967 + MIR SINE MIR 4 126 -136 5489 112 110 34 chr1 206038767 206039854 -76153810 + MER11A LTR ERVK 1 1266 0 12658 94 2 20 chr1 206039854 206041576 -76152088 + HERVK11 LTR ERVK 1 1692 -6261 7807 86 3 0 chr1 206041575 206042574 -76151090 + HERVK11 LTR ERVK 2417 3418 -4535 * 34804 74 4 8 chr1 206042574 206046998 -76146666 + HERVK11 LTR ERVK 3546 7952 -1 4479 60 37 8 chr1 206046999 206048004 -76145660 + MER11A LTR ERVK 1 1266 0 467 250 101 6 chr1 206048015 206048183 -76145481 - L2 LINE L2 -28 3285 3102 770 276 65 18 chr1 206048195 206048412 -76145252 - MLT1I LTR MaLR 0 409 183 950 271 142 26 chr1 206048442 206048900 -76144764 + LTR33 LTR ERVL 1 511 -10 1343 135 0 39 chr1 206048985 206049192 -76144472 + AluSx SINE Alu 2 200 -112 698 140 19 0 chr1 206049223 206049330 -76144334 + AluSx SINE Alu 186 294 -15 1721 270 115 39 chr1 206049382 206050300 -76143364 - L2 LINE L2 -340 2932 1950 407 203 7 34 chr1 206050838 206050986 -76142678 + GA-rich Low_complexity Low_complexity 2 145 0 373 306 49 14 chr1 206051075 206051219 -76142445 - MIR3 SINE MIR -41 167 19 1547 172 63 66 chr1 206052552 206052948 -76140716 - MLT2C1 LTR ERVL 0 397 3 458 339 49 51 chr1 206053070 206053518 -76140146 - L2 LINE L2 0 3272 2826 1769 157 10 32 chr1 206053615 206053994 -76139670 + AluJo SINE Alu 1 312 0 232 303 75 50 chr1 206054198 206054439 -76139225 - L2 LINE L2 -885 2429 2183 364 189 89 0 chr1 206054445 206054535 -76139129 - MIR SINE MIR -86 176 79 35 24 0 0 chr1 206054792 206054834 -76138830 + AT_rich Low_complexity Low_complexity 1 42 0 495 173 67 0 chr1 206054837 206054941 -76138723 - L1MA9 LINE L1 -22 6290 6180 1268 177 13 4 chr1 206054943 206055169 -76138495 - L1MA9 LINE L1 -231 6081 5854 194 195 0 0 chr1 206055350 206055391 -76138273 - MIR SINE MIR -171 91 51 405 39 0 0 chr1 206056152 206056203 -76137461 + (TG)n Simple_repeat Simple_repeat 2 52 0 326 282 55 9 chr1 206056427 206056537 -76137127 + MIR SINE MIR 32 146 -116 195 162 0 0 chr1 206056764 206056801 -76136863 + (CAGGA)n Simple_repeat Simple_repeat 3 39 0 262 262 71 0 chr1 206056936 206057020 -76136644 - L2 LINE L2 -7 3265 3176 635 225 7 0 chr1 206057126 206057264 -76136400 - MIR SINE MIR -10 252 114 255 239 28 0 chr1 206057354 206057425 -76136239 + MIR SINE MIR 188 260 -2 1649 219 200 19 chr1 206057569 206058045 -76135619 - MLT1G LTR MaLR 0 590 29 516 234 18 48 chr1 206058294 206058461 -76135203 - MER103 DNA DNA -2 164 3 257 247 12 37 chr1 206058657 206058729 -76134935 + MER5B DNA MER1_type 76 147 -31 4943 63 7 0 chr1 206058729 206059346 -76134318 - L1PA7 LINE L1 0 6154 5534 30335 84 5 10 chr1 206059359 206063609 -76130055 - L1PA7 LINE L1 -743 5403 1173 1614 151 63 32 chr1 206063815 206064122 -76129542 + AluJo SINE Alu 3 312 0 1065 273 19 29 chr1 206064955 206065263 -76128401 - L1ME LINE L1 -334 5787 5483 3102 217 14 30 chr1 206065792 206066450 -76127214 - MER82 DNA MER2_type -6 647 1 392 242 27 40 chr1 206066831 206066849 -76126815 - L1MA10 LINE L1 -1 6333 6316 3189 220 71 12 chr1 206066849 206067782 -76125882 - L1ME1 LINE L1 -5 6161 5175 313 256 158 49 chr1 206067773 206068019 -76125645 - L1MC4a LINE L1 -1855 5953 5681 * 1546 135 4 0 chr1 206068235 206068472 -76125192 - AluSq SINE Alu -7 306 69 1181 289 40 23 chr1 206168472 206168802 -76024862 + L1ME3A LINE L1 5258 5604 -566 1551 120 114 44 chr1 206168802 206169119 -76024545 + MER44D DNA MER2_type 1 609 0 1181 289 40 23 chr1 206169119 206169394 -76024270 + L1ME3A LINE L1 5604 5873 -297 737 304 49 30 chr1 206169765 206170170 -76023494 + L1ME4a LINE L1 5485 5897 -224 335 345 93 14 chr1 206170249 206170388 -76023276 + HAL1b LINE L1 1192 1341 -7 2565 36 0 0 chr1 206170620 206170923 -76022741 - AluY SINE Alu -8 303 1 267 224 336 0 chr1 206171248 206171373 -76022291 - MIR SINE MIR -68 194 28 780 274 68 11 chr1 206171815 206172078 -76021586 + L2 LINE L2 2556 2833 -481 433 256 50 25 chr1 206172079 206172239 -76021425 - LTR16C LTR ERVL -1 490 327 871 256 127 53 chr1 206172894 206173289 -76020375 + L2 LINE L2 2882 3305 -8 483 18 0 0 chr1 206173302 206173358 -76020306 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 2063 163 22 8 chr1 206174808 206175164 -76018500 + MLT1A1 LTR MaLR 5 365 0 205 179 0 0 chr1 206175404 206175443 -76018221 + GA-rich Low_complexity Low_complexity 2 40 0 204 323 40 20 chr1 206177717 206177816 -76015848 + MIR3 SINE MIR 101 201 -7 192 222 28 111 chr1 206177813 206177885 -76015779 - MIR SINE MIR -110 152 87 * 393 274 173 10 chr1 206178071 206178268 -76015396 - MIR SINE MIR -13 249 21 289 220 70 70 chr1 206178699 206178799 -76014865 + L2 LINE L2 3199 3298 -15 247 254 0 58 chr1 206179707 206179896 -76013768 + (GGATG)n Simple_repeat Simple_repeat 3 180 0 318 238 0 55 chr1 206179946 206180110 -76013554 + (GGATG)n Simple_repeat Simple_repeat 2 156 0 241 248 0 57 chr1 206180218 206180375 -76013289 + (GGATG)n Simple_repeat Simple_repeat 4 151 0 201 283 26 80 chr1 206181042 206181155 -76012509 + MIR3 SINE MIR 102 208 0 21 0 0 0 chr1 206182809 206182830 -76010834 + AT_rich Low_complexity Low_complexity 1 21 0 263 254 16 0 chr1 206183290 206183353 -76010311 + MIR3 SINE MIR 99 162 -46 194 298 0 0 chr1 206183370 206183417 -76010247 - MIR SINE MIR 0 262 216 346 285 85 15 chr1 206183981 206184111 -76009553 - MIR SINE MIR -36 226 88 1159 303 241 4 chr1 206184504 206185472 -76008192 - L2 LINE L2 -4 3309 2109 227 308 162 0 chr1 206185507 206185624 -76008040 - MIR SINE MIR -75 187 52 195 388 12 0 chr1 206185619 206185684 -76007980 - L2 LINE L2 -14 3258 3193 375 307 102 8 chr1 206185684 206185811 -76007853 + MIR3 SINE MIR 4 142 -66 204 40 0 0 chr1 206185813 206185838 -76007826 + (TTG)n Simple_repeat Simple_repeat 2 26 0 546 287 107 0 chr1 206185839 206185989 -76007675 - L2 LINE L2 -5 3267 3102 188 186 186 57 chr1 206186149 206186219 -76007445 + MIR SINE MIR 183 261 -1 296 280 32 21 chr1 206186262 206186355 -76007309 + MIR SINE MIR 119 212 -50 1092 278 121 38 chr1 206187143 206187589 -76006075 - L2 LINE L2 -2 3311 2829 481 250 59 59 chr1 206187833 206187985 -76005679 + MIR SINE MIR 84 235 -27 3171 227 146 141 chr1 206188004 206188565 -76005099 - L2 LINE L2 -711 2603 2046 660 186 25 0 chr1 206188565 206188683 -76004981 + FLAM_A SINE Alu 19 139 -3 3171 227 146 141 chr1 206188683 206190361 -76003303 - L2 LINE L2 -1268 2046 237 501 241 22 22 chr1 206190814 206190951 -76002713 + LTR45 LTR ERV1 389 525 0 798 290 73 9 chr1 206191095 206191412 -76002252 + L2 LINE L2 1799 2135 -1179 306 276 23 11 chr1 206191825 206191912 -76001752 - MIR SINE MIR -98 110 23 793 219 47 90 chr1 206191977 206192210 -76001454 + MIR SINE MIR 10 232 -30 216 273 36 0 chr1 206193973 206194028 -75999636 + GA-rich Low_complexity Low_complexity 2 58 0 501 296 35 6 chr1 206194203 206194375 -75999289 + MIR3 SINE MIR 32 208 0 236 320 0 16 chr1 206194375 206194497 -75999167 + CT-rich Low_complexity Low_complexity 1 120 0 309 310 33 102 chr1 206194572 206194875 -75998789 + L2 LINE L2 2939 3220 -52 257 206 29 59 chr1 206195593 206195729 -75997935 + (CACCT)n Simple_repeat Simple_repeat 5 136 0 296 247 0 65 chr1 206195749 206195919 -75997745 + (CATCC)n Simple_repeat Simple_repeat 4 162 0 356 309 48 0 chr1 206195946 206196114 -75997550 + C-rich Low_complexity Low_complexity 4 179 0 180 111 0 0 chr1 206196210 206196237 -75997427 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 421 264 103 51 chr1 206196255 206196550 -75997114 - L1ME4a LINE L1 -202 5919 5624 2180 123 0 0 chr1 206197329 206197629 -75996035 + AluSx SINE Alu 1 300 -12 215 125 0 0 chr1 206197660 206197700 -75995964 + MIR SINE MIR 81 120 -88 301 238 7 146 chr1 206198203 206198354 -75995310 - MER5B DNA MER1_type -45 133 4 1485 104 61 0 chr1 206198604 206198816 -75994848 - MER61E LTR ERV1 -4 565 341 291 163 0 20 chr1 206198838 206198887 -75994777 - MER61E LTR ERV1 -405 164 117 277 260 0 90 chr1 206198864 206198964 -75994700 - MER61E LTR ERV1 -380 189 99 * 547 181 24 39 chr1 206198967 206199094 -75994570 - LTR25 LTR ERV1 -438 356 232 375 256 83 83 chr1 206199061 206199217 -75994447 - MER61E LTR ERV1 -413 156 1 * 301 281 135 0 chr1 206199277 206199373 -75994291 + MIR SINE MIR 43 151 -111 21 0 0 0 chr1 206200791 206200812 -75992852 + AT_rich Low_complexity Low_complexity 1 21 0 251 48 0 0 chr1 206200842 206200884 -75992780 + L1PA3 LINE L1 6114 6155 0 570 234 24 115 chr1 206201070 206201230 -75992434 + MIR3 SINE MIR 10 148 -60 1183 213 77 3 chr1 206201230 206201530 -75992134 - MER33 DNA MER1_type 0 324 3 570 234 24 115 chr1 206201530 206201578 -75992086 + MIR3 SINE MIR 148 199 -9 804 254 46 23 chr1 206201934 206202241 -75991423 - L1ME4a LINE L1 0 6121 5808 690 230 105 15 chr1 206202499 206202699 -75990965 + MIR SINE MIR 22 239 -23 244 151 27 68 chr1 206202701 206202774 -75990890 - L1ME4a LINE L1 -340 5781 5712 452 299 178 43 chr1 206202790 206203285 -75990379 - L2 LINE L2 -12 3301 2722 432 208 10 40 chr1 206203293 206203394 -75990270 - MER63A DNA MER1_type 0 210 113 367 224 28 28 chr1 206203413 206203520 -75990144 - Tigger5 DNA MER2_type 0 2323 2217 296 204 0 0 chr1 206203506 206203560 -75990104 - Tigger5 DNA MER2_type -2268 55 2 * 364 106 0 0 chr1 206203595 206203642 -75990022 - MER63A DNA MER1_type -163 47 1 241 292 0 31 chr1 206203649 206203714 -75989950 - L2 LINE L2 -599 2715 2653 235 182 0 0 chr1 206203733 206203777 -75989887 - L1ME LINE L1 -453 5668 5625 235 275 101 9 chr1 206203897 206203945 -75989719 + L2 LINE L2 2947 2989 -324 189 0 0 0 chr1 206203945 206203966 -75989698 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 235 275 101 9 chr1 206203966 206204026 -75989638 + L2 LINE L2 2989 3065 -248 343 153 17 0 chr1 206204069 206204128 -75989536 + L2 LINE L2 3254 3313 0 6003 134 25 14 chr1 206204354 206205431 -75988233 + L1MA7 LINE L1 5193 6285 -6 282 302 42 0 chr1 206205706 206205802 -75987862 + L2 LINE L2 1609 1708 -1606 702 244 111 33 chr1 206205908 206206178 -75987486 - L2 LINE L2 -1203 2111 1821 392 146 23 115 chr1 206206178 206206245 -75987419 + L1MC5 LINE L1 7085 7136 -825 2084 120 7 7 chr1 206206245 206206553 -75987111 + AluSx SINE Alu 1 308 -4 392 146 23 115 chr1 206206553 206206615 -75987049 + L1MC5 LINE L1 7136 7202 -759 1181 191 28 0 chr1 206206618 206206833 -75986831 + MER58A DNA MER1_type 1 221 -3 237 259 35 0 chr1 206207396 206207454 -75986210 + Charlie4 DNA MER1_type 1898 1957 -4 1848 229 2 7 chr1 206207804 206208241 -75985423 - L1PA11 LINE L1 0 6174 5740 241 237 0 0 chr1 206208241 206208300 -75985364 + L1 LINE L1 4773 4831 -1315 425 19 19 0 chr1 206209264 206209318 -75984346 + (TG)n Simple_repeat Simple_repeat 2 56 0 777 161 8 0 chr1 206209872 206209996 -75983668 - MLT1A1 LTR MaLR 0 365 241 729 146 9 0 chr1 206209998 206210108 -75983556 + MLT1B LTR MaLR 266 376 -14 769 255 71 14 chr1 206210179 206210391 -75983273 + MIR SINE MIR 29 252 -10 1809 122 0 4 chr1 206211349 206211611 -75982053 + AluSg SINE Alu 12 272 -38 293 336 19 19 chr1 206212337 206212441 -75981223 + MIR SINE MIR 46 149 -113 334 267 144 20 chr1 206212916 206213062 -75980602 - MIR SINE MIR -79 183 20 193 324 149 0 chr1 206213741 206213889 -75979775 - L2 LINE L2 -798 2516 2347 3422 74 0 0 chr1 206215925 206216357 -75977307 - L1PA11 LINE L1 -1 6173 5742 1162 156 0 0 chr1 206216357 206216543 -75977121 + L1P LINE L1 4771 4956 -1190 1942 225 53 36 chr1 206216613 206217080 -75976584 + MLT2B2 LTR ERVL 1 479 -36 243 0 0 0 chr1 206217080 206217107 -75976557 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 1942 225 53 36 chr1 206217107 206217145 -75976519 + MLT2B2 LTR ERVL 479 515 0 416 268 71 8 chr1 206217432 206217559 -75976105 - MIR SINE MIR -69 193 59 1362 307 101 34 chr1 206218383 206219393 -75974271 - L2 LINE L2 -4 3309 2227 742 272 74 18 chr1 206219442 206219725 -75973939 + LTR16B LTR ERVL 166 464 0 699 239 151 68 chr1 206219782 206219890 -75973774 + MLT1H LTR MaLR 119 217 -332 2297 148 20 0 chr1 206219890 206220248 -75973416 + MLT1A1 LTR MaLR 1 365 0 699 239 151 68 chr1 206220248 206220537 -75973127 + MLT1H LTR MaLR 217 549 0 205 129 0 0 chr1 206220547 206220578 -75973086 - L2 LINE L2 -1090 2224 2194 259 290 43 43 chr1 206220672 206220765 -75972899 - L2 LINE L2 -16 3256 3164 676 317 43 23 chr1 206221403 206221706 -75971958 - L2 LINE L2 -817 2497 2189 246 293 217 9 chr1 206222042 206222148 -75971516 + MIR SINE MIR 48 175 -87 249 0 0 115 chr1 206222629 206222681 -75970983 + (TAAAAA)n Simple_repeat Simple_repeat 3 48 0 695 189 145 0 chr1 206222730 206222889 -75970775 - MER5A DNA MER1_type 0 189 8 624 312 57 24 chr1 206223923 206224221 -75969443 + L2 LINE L2 3005 3312 -1 212 259 19 0 chr1 206224745 206224799 -75968865 + GA-rich Low_complexity Low_complexity 5 59 0 181 319 116 0 chr1 206224909 206224978 -75968686 - MIR SINE MIR -86 122 46 344 258 86 18 chr1 206226399 206226553 -75967111 - MIR3 SINE MIR -40 168 2 2457 146 31 31 chr1 206227041 206227466 -75966198 + MSTB1 LTR MaLR 7 431 -1 881 220 55 32 chr1 206227660 206227878 -75965786 + MIR SINE MIR 35 257 -5 328 248 90 83 chr1 206228572 206228705 -75964959 - MER94 DNA DNA 0 134 1 240 289 0 22 chr1 206228898 206228988 -75964676 - L3b LINE CR1 -200 1383 1296 202 359 0 17 chr1 206230274 206230391 -75963273 + G-rich Low_complexity Low_complexity 4 118 0 188 229 0 21 chr1 206230469 206230517 -75963147 + L2 LINE L2 1405 1451 -1863 211 327 226 13 chr1 206230712 206230871 -75962793 + MIR SINE MIR 20 212 -50 247 303 0 0 chr1 206231259 206231325 -75962339 + L2 LINE L2 2722 2787 -527 2164 98 16 3 chr1 206231435 206231741 -75961923 - AluSq SINE Alu -1 312 3 474 333 54 74 chr1 206232043 206232677 -75960987 + L2 LINE L2 2341 2974 -298 369 43 0 0 chr1 206232677 206232724 -75960940 + (CA)n Simple_repeat Simple_repeat 2 48 0 474 333 54 74 chr1 206232724 206232810 -75960854 + L2 LINE L2 2974 3060 -212 2198 135 128 13 chr1 206232836 206233220 -75960444 + MSTA LTR MaLR 1 428 0 657 324 40 24 chr1 206234660 206234910 -75958754 + MIR SINE MIR 3 256 -6 1763 216 116 61 chr1 206234976 206235569 -75958095 + MLT1E2 LTR MaLR 1 626 0 1648 167 10 23 chr1 206235598 206235903 -75957761 - AluJo SINE Alu -11 301 1 201 289 0 0 chr1 206237156 206237208 -75956456 + CT-rich Low_complexity Low_complexity 2 53 0 640 230 69 66 chr1 206237208 206237432 -75956232 + MLT1J2 LTR MaLR 37 259 -191 975 193 11 11 chr1 206237451 206237638 -75956026 + MER58A DNA MER1_type 37 223 -1 598 212 31 98 chr1 206237640 206237837 -75955827 + MLT1J2 LTR MaLR 258 444 -2 372 246 109 125 chr1 206237839 206237933 -75955731 - MIR SINE MIR 0 262 168 1780 124 0 8 chr1 206237933 206238200 -75955464 - AluSg1 SINE Alu -10 299 35 372 246 109 125 chr1 206238200 206238361 -75955303 - MIR SINE MIR -94 168 11 465 335 56 12 chr1 206238417 206238578 -75955086 - MIR SINE MIR -75 187 20 475 294 16 8 chr1 206239018 206239144 -75954520 + MER5A DNA MER1_type 57 183 -6 894 172 13 7 chr1 206240619 206240770 -75952894 + MER58B DNA MER1_type 169 320 -21 413 197 53 0 chr1 206240765 206240841 -75952823 + MER58B DNA MER1_type 262 341 0 * 718 235 41 6 chr1 206240860 206241030 -75952634 - MLT1I LTR MaLR -233 176 1 214 345 48 0 chr1 206241030 206241114 -75952550 - L2 LINE L2 -27 3286 3199 458 313 61 14 chr1 206242227 206242374 -75951290 + MIR3 SINE MIR 16 169 -39 210 241 0 69 chr1 206242491 206242549 -75951115 + L2 LINE L2 3254 3307 -6 405 288 95 89 chr1 206243020 206243150 -75950514 + L2 LINE L2 2937 3065 -207 2225 107 0 0 chr1 206243150 206243448 -75950216 - AluSx SINE Alu -14 298 1 405 288 95 89 chr1 206243448 206243643 -75950021 + L2 LINE L2 3065 3264 -8 1664 161 28 0 chr1 206243828 206244114 -75949550 + AluJb SINE Alu 1 294 -18 241 259 82 12 chr1 206244339 206244424 -75949240 + L2 LINE L2 3153 3243 -70 239 253 92 0 chr1 206244467 206244554 -75949110 - L2 LINE L2 -9 3304 3210 224 242 11 63 chr1 206244572 206244667 -75948997 + CT-rich Low_complexity Low_complexity 3 92 0 619 239 81 10 chr1 206245376 206245585 -75948079 - L1MEc LINE L1 -5043 1353 1130 3862 244 30 3 chr1 206245607 206246537 -75947127 - L1MEc LINE L1 -5415 981 27 922 263 19 27 chr1 206246831 206247090 -75946574 + MIR SINE MIR 6 262 0 247 327 13 60 chr1 206247104 206247254 -75946410 + L2 LINE L2 2630 2772 -542 208 241 19 19 chr1 206247630 206247684 -75945980 + L2 LINE L2 3219 3272 0 445 316 45 8 chr1 206248603 206248736 -75944928 - L2 LINE L2 -1 3271 3134 22 99 0 0 chr1 206248736 206248807 -75944857 + AT_rich Low_complexity Low_complexity 1 71 0 624 241 0 97 chr1 206249012 206249228 -75944436 + MIR SINE MIR 68 262 0 350 102 17 34 chr1 206249326 206249385 -75944279 - MLT1A1 LTR MaLR -307 58 1 1636 180 14 27 chr1 206249964 206250258 -75943406 + AluJo SINE Alu 1 290 -22 5013 187 14 64 chr1 206250325 206250906 -75942758 + L1P LINE L1 2745 3230 -2916 2457 50 40 0 chr1 206250906 206251205 -75942459 + AluYa5 SINE Alu 1 311 0 5013 187 14 64 chr1 206251205 206251897 -75941767 + L1P LINE L1 3230 3955 -2191 180 0 0 0 chr1 206251901 206251921 -75941743 + (TA)n Simple_repeat Simple_repeat 2 21 0 3334 200 70 105 chr1 206252066 206252890 -75940774 - L2 LINE L2 -622 2692 1918 1846 213 116 49 chr1 206252890 206253398 -75940266 - MLT1F LTR MaLR 0 542 1 3334 200 70 105 chr1 206253398 206253725 -75939939 - L2 LINE L2 -1396 1918 1581 1229 93 0 0 chr1 206254363 206254514 -75939150 - AluSg/x SINE Alu -53 259 109 2463 239 23 8 chr1 206254614 206255234 -75938430 - L1M4 LINE L1 -1133 5293 4665 * 2790 218 129 18 chr1 206255231 206256325 -75937339 - L1MCa LINE L1 -2943 3483 2281 222 37 0 0 chr1 206256325 206256352 -75937312 + (TG)n Simple_repeat Simple_repeat 1 27 0 2790 218 129 18 chr1 206256352 206256500 -75937164 - L1MCa LINE L1 -4145 2281 2151 965 224 5 0 chr1 206256501 206256693 -75936971 - AluJo SINE Alu 0 312 120 1123 255 46 34 chr1 206256720 206257135 -75936529 - L1MCa LINE L1 -4455 2152 1733 1660 112 26 4 chr1 206257148 206257415 -75936249 + L1MA8 LINE L1 6019 6291 0 281 207 14 0 chr1 206257446 206257518 -75936146 - L1MCa LINE L1 -4830 1777 1516 * 7817 113 5 7 chr1 206257517 206258956 -75934708 + L1MA1 LINE L1 4869 6302 0 1984 299 53 50 chr1 206258968 206260427 -75933237 - L1MEc LINE L1 -4898 1498 35 1004 216 34 52 chr1 206260516 206260946 -75932718 - MLT1A2 LTR MaLR -2 394 2 854 311 134 46 chr1 206262718 206263284 -75930380 + L3 LINE CR1 911 1526 -51 245 300 60 73 chr1 206263911 206264061 -75929603 + L2 LINE L2 3122 3269 -3 228 125 0 0 chr1 206264979 206265019 -75928645 - LTR66 LTR ERVL -172 438 399 189 171 0 0 chr1 206265019 206265054 -75928610 + (TA)n Simple_repeat Simple_repeat 2 36 0 318 204 21 54 chr1 206265056 206265149 -75928515 - L1MC4 LINE L1 -1339 6703 6614 336 341 68 0 chr1 206265682 206265814 -75927850 + MIR3 SINE MIR 61 201 -7 366 316 91 53 chr1 206266406 206266593 -75927071 + L3 LINE CR1 1170 1363 -214 21 0 0 0 chr1 206266633 206266654 -75927010 + AT_rich Low_complexity Low_complexity 1 21 0 2310 229 90 43 chr1 206266925 206267489 -75926175 - MLT1G1 LTR MaLR -3 592 2 339 164 0 0 chr1 206267489 206267550 -75926114 + (TG)n Simple_repeat Simple_repeat 2 62 0 709 290 80 86 chr1 206267689 206268355 -75925309 + L1MEd LINE L1 7 668 -5451 465 19 0 0 chr1 206268370 206268424 -75925240 + (CA)n Simple_repeat Simple_repeat 1 54 0 24 0 0 0 chr1 206270058 206270082 -75923582 + AT_rich Low_complexity Low_complexity 1 24 0 2185 122 0 0 chr1 206272045 206272398 -75921266 + AluSx SINE Alu 1 353 0 625 212 0 9 chr1 206272649 206272762 -75920902 - FRAM SINE Alu -30 146 35 786 197 60 32 chr1 206273055 206273273 -75920391 - L1MC5 LINE L1 -40 7855 7632 2066 215 66 73 chr1 206273285 206274039 -75919625 - L1MC5 LINE L1 -389 7506 6758 1000 271 137 50 chr1 206274042 206274641 -75919023 - L1MC5 LINE L1 -743 5337 4791 1183 43 0 14 chr1 206274641 206274781 -75918883 - MER85 DNA T2_type 0 139 2 1000 271 137 50 chr1 206274781 206275071 -75918593 - L1MC5 LINE L1 -1289 4791 4528 2040 114 13 23 chr1 206275071 206275370 -75918294 - AluSq SINE Alu -17 296 1 1000 271 137 50 chr1 206275370 206275941 -75917723 - L1MC5 LINE L1 -1552 4528 3944 550 257 20 7 chr1 206276227 206276379 -75917285 - L1M4 LINE L1 -1777 4369 4216 * 2265 255 43 45 chr1 206276371 206277207 -75916457 - L1MC5 LINE L1 -5231 839 6 2234 123 40 9 chr1 206277219 206277569 -75916095 - MER46B DNA MER2_type 0 236 1 498 311 0 0 chr1 206279131 206279250 -75914414 - MIR3 SINE MIR -47 161 43 23 54 0 0 chr1 206279294 206279331 -75914333 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr1 206279367 206279393 -75914271 + AT_rich Low_complexity Low_complexity 1 26 0 363 154 77 33 chr1 206279478 206279569 -75914095 - L1MA8 LINE L1 -2 6289 6195 2047 111 0 17 chr1 206281204 206281492 -75912172 + AluSc SINE Alu 3 285 -24 1762 135 12 75 chr1 206281639 206281972 -75911692 - AluJb SINE Alu 0 312 1 199 371 56 0 chr1 206283070 206283159 -75910505 - L2 LINE L2 -40 3232 3139 656 287 109 31 chr1 206283613 206284045 -75909619 - L1ME3A LINE L1 -287 5883 5416 1180 292 32 10 chr1 206284598 206284999 -75908665 - L2 LINE L2 -888 2426 2017 1959 146 3 3 chr1 206285250 206285552 -75908112 + AluJb SINE Alu 1 302 -10 861 255 69 4 chr1 206285619 206285850 -75907814 - MIR SINE MIR 0 262 17 263 202 48 87 chr1 206286600 206286704 -75906960 - L2 LINE L2 -182 3090 2991 315 0 0 0 chr1 206287027 206287062 -75906602 + (CA)n Simple_repeat Simple_repeat 2 36 0 405 81 0 0 chr1 206287062 206287124 -75906540 + (GA)n Simple_repeat Simple_repeat 1 62 0 754 250 176 35 chr1 206287289 206287693 -75905971 + LTR33A LTR ERVL 63 523 0 688 288 68 42 chr1 206287693 206288078 -75905586 - L2 LINE L2 -559 2755 2361 290 26 26 0 chr1 206288666 206288705 -75904959 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2999 221 32 14 chr1 206289481 206290025 -75903639 - MER82 DNA MER2_type 0 653 95 2346 122 20 37 chr1 206290025 206290103 -75903561 + MER7A DNA MER2_type 1 79 -2959 2252 101 3 10 chr1 206290103 206290401 -75903263 - AluSp SINE Alu -17 296 1 2346 122 20 37 chr1 206290401 206290676 -75902988 + MER7A DNA MER2_type 79 346 0 2999 221 32 14 chr1 206290676 206290764 -75902900 - MER82 DNA MER2_type -558 95 10 393 361 57 22 chr1 206290959 206291186 -75902478 + L3 LINE CR1 1219 1453 -124 800 186 119 42 chr1 206292288 206292481 -75901183 - MER3 DNA MER1_type -1 208 1 337 209 0 35 chr1 206292851 206292937 -75900727 + L2 LINE L2 3231 3313 0 548 217 0 27 chr1 206293109 206293293 -75900371 + GA-rich Low_complexity Low_complexity 2 180 0 369 243 63 121 chr1 206293985 206294191 -75899473 + L3 LINE CR1 1354 1547 -30 770 217 179 48 chr1 206295363 206295797 -75897867 + L2 LINE L2 2607 3111 -202 207 313 30 30 chr1 206295954 206296021 -75897643 + L2 LINE L2 3206 3272 0 369 247 143 3 chr1 206297359 206297499 -75896165 + MIR SINE MIR 18 176 -59 525 285 40 88 chr1 206297558 206297832 -75895832 + MIR SINE MIR 2 262 0 476 279 88 67 chr1 206298219 206298684 -75894980 - MLT1L LTR MaLR -4 611 98 235 118 0 0 chr1 206299097 206299131 -75894533 + HAL1 LINE L1 1422 1455 -1052 372 178 7 53 chr1 206299735 206299887 -75893777 + GA-rich Low_complexity Low_complexity 1 145 0 1211 36 7 0 chr1 206300721 206300859 -75892805 - L1PA3 LINE L1 -3 6152 6014 297 300 22 0 chr1 206301024 206301114 -75892550 - MIR SINE MIR -66 142 51 236 303 128 0 chr1 206301389 206301498 -75892166 - MLT1J2 LTR MaLR -46 404 282 759 250 88 0 chr1 206301503 206301695 -75891969 - MER3 DNA MER1_type 0 209 1 1137 224 38 0 chr1 206301697 206301934 -75891730 - MLT1J2 LTR MaLR -204 246 1 418 303 141 6 chr1 206303115 206303474 -75890190 + L2 LINE L2 2564 2997 -316 2589 238 13 42 chr1 206304019 206304438 -75889226 - L1ME1 LINE L1 -92 6354 5965 2212 98 14 10 chr1 206304438 206304734 -75888930 - AluSq SINE Alu -16 297 1 2589 238 13 42 chr1 206304734 206305076 -75888588 - L1ME1 LINE L1 -481 5965 5615 393 185 0 92 chr1 206305050 206305169 -75888495 - L1ME1 LINE L1 -2382 4044 3937 * 676 204 26 16 chr1 206305149 206305340 -75888324 - L1ME1 LINE L1 -2953 3473 3281 412 172 50 10 chr1 206305338 206305437 -75888227 - L1ME1 LINE L1 -4023 2584 2482 * 476 197 38 30 chr1 206305445 206305577 -75888087 - L1ME1 LINE L1 -4221 2386 2254 239 111 42 14 chr1 206305582 206305654 -75888010 + (TA)n Simple_repeat Simple_repeat 2 75 0 490 241 55 95 chr1 206305671 206305811 -75887853 - L1ME1 LINE L1 -4826 1600 1473 1782 207 37 3 chr1 206305811 206306164 -75887500 + MLT1A1 LTR MaLR 1 365 0 490 241 55 95 chr1 206306164 206306276 -75887388 - L1ME1 LINE L1 -4953 1473 1358 43257 38 3 0 chr1 206306379 206312288 -75881376 + L1PA4 LINE L1 227 6155 0 501 181 13 71 chr1 206312371 206312526 -75881138 - L1M4 LINE L1 -943 5203 5058 3603 179 6 22 chr1 206312627 206313348 -75880316 + L1P LINE L1 4459 5167 -979 1407 182 11 48 chr1 206313348 206313617 -75880047 + AluJo SINE Alu 1 259 -53 5733 126 26 2 chr1 206313617 206314642 -75879022 + L1PA16 LINE L1 5110 6166 0 1509 109 0 42 chr1 206314892 206315131 -75878533 + L1PA15 LINE L1 5935 6163 -2 2154 132 3 0 chr1 206316667 206316971 -75876693 - AluSx SINE Alu -7 305 1 186 62 46 46 chr1 206317300 206317365 -75876299 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 255 319 33 22 chr1 206318162 206318253 -75875411 - MIR SINE MIR -59 149 58 1724 178 7 19 chr1 206319448 206319757 -75873907 + AluJo SINE Alu 1 305 -7 749 305 32 49 chr1 206320454 206320864 -75872800 - L2 LINE L2 -4 3309 2907 786 291 40 35 chr1 206321050 206321504 -75872160 + LTR16A1 LTR ERVL 2 457 0 317 376 0 0 chr1 206322378 206322487 -75871177 - MIR SINE MIR -94 168 60 385 233 58 0 chr1 206322831 206322934 -75870730 - MIR SINE MIR -80 182 74 328 253 72 91 chr1 206322953 206323171 -75870493 - MIR SINE MIR -12 250 45 2872 163 58 27 chr1 206324164 206324748 -75868916 - L1MB7 LINE L1 -19 6165 5564 263 338 95 45 chr1 206325403 206325802 -75867862 + L2 LINE L2 2852 3270 -2 246 250 52 21 chr1 206325798 206325894 -75867770 - MIR3 SINE MIR -45 163 65 * 198 0 0 0 chr1 206328556 206328578 -75865086 + (CA)n Simple_repeat Simple_repeat 2 23 0 2046 135 0 0 chr1 206329285 206329614 -75864050 - AluSx SINE Alu 0 329 1 386 279 6 56 chr1 206329621 206329782 -75863882 - MIR SINE MIR -65 197 45 383 275 63 48 chr1 206330447 206330654 -75863010 + L2 LINE L2 2990 3199 -114 274 268 71 24 chr1 206330689 206330816 -75862848 - L2 LINE L2 -1 3312 3180 328 177 21 117 chr1 206331100 206331228 -75862436 + MLT1H LTR MaLR 20 161 -388 545 321 119 23 chr1 206331306 206331702 -75861962 + L2 LINE L2 2839 3272 0 1781 209 88 31 chr1 206332977 206333455 -75860209 + MLT1D LTR MaLR 1 505 0 658 251 116 54 chr1 206333737 206334107 -75859557 + L2 LINE L2 2921 3313 0 240 170 0 57 chr1 206334454 206334507 -75859157 + GA-rich Low_complexity Low_complexity 3 52 0 299 273 57 0 chr1 206334998 206335086 -75858578 - MIR SINE MIR -78 130 38 228 243 69 62 chr1 206335916 206336060 -75857604 + MIR3 SINE MIR 2 146 -62 320 319 148 31 chr1 206338298 206338555 -75855109 - L2 LINE L2 -78 3235 2949 373 261 36 14 chr1 206338926 206339064 -75854600 + MIR3 SINE MIR 45 185 -23 188 272 55 145 chr1 206340482 206340772 -75852892 - L2 LINE L2 -43 3229 2966 522 246 19 51 chr1 206341033 206341072 -75852592 + L2 LINE L2 2293 2332 -982 2091 199 39 5 chr1 206341072 206341484 -75852180 - MSTB LTR MaLR 0 426 1 522 246 19 51 chr1 206341484 206341700 -75851964 + L2 LINE L2 2332 2540 -774 341 227 171 57 chr1 206341815 206341991 -75851673 - L1ME3A LINE L1 -4 6166 5971 832 202 128 49 chr1 206342108 206342351 -75851313 - L1ME3A LINE L1 -235 5935 5674 812 293 148 7 chr1 206342351 206342899 -75850765 + L2 LINE L2 2686 3313 0 279 320 57 52 chr1 206343637 206343831 -75849833 + MIR SINE MIR 18 212 -50 304 301 32 45 chr1 206344060 206344216 -75849448 + L1MB3 LINE L1 4402 4555 -1591 773 263 85 33 chr1 206344224 206345298 -75848366 + L1MB3 LINE L1 4592 5880 -303 * 4964 177 30 25 chr1 206345297 206346342 -75847322 + L1MA9 LINE L1 4387 5425 -887 2129 133 3 0 chr1 206346342 206346643 -75847021 + AluSx SINE Alu 1 302 -10 4964 177 30 25 chr1 206346643 206347349 -75846315 + L1MA9 LINE L1 5425 6140 -172 1812 50 0 18 chr1 206347349 206347567 -75846097 + AluY SINE Alu 82 295 -16 4964 177 30 25 chr1 206347567 206347703 -75845961 + L1MA9 LINE L1 6140 6274 -38 40 49 0 0 chr1 206347707 206347768 -75845896 + AT_rich Low_complexity Low_complexity 1 61 0 2000 134 9 0 chr1 206347860 206348180 -75845484 + L1MB3 LINE L1 5861 6183 0 656 267 121 5 chr1 206348213 206348419 -75845245 + MIR SINE MIR 20 249 -13 297 330 64 0 chr1 206348446 206348540 -75845124 - L2 LINE L2 -16 3256 3157 264 246 315 23 chr1 206348678 206348808 -75844856 + L3 LINE CR1 1381 1548 -29 251 232 0 30 chr1 206399372 206399471 -75794193 + A-rich Low_complexity Low_complexity 5 100 0 284 119 17 0 chr1 206399486 206399545 -75794119 + (CA)n Simple_repeat Simple_repeat 1 60 0 201 210 16 32 chr1 206400941 206401003 -75792661 + (CCCG)n Simple_repeat Simple_repeat 4 64 0 237 65 0 0 chr1 206401628 206401659 -75792005 + (T)n Simple_repeat Simple_repeat 1 31 0 657 242 134 9 chr1 206404689 206404912 -75788752 + MIR SINE MIR 12 262 0 429 274 170 0 chr1 206405008 206405143 -75788521 + MER5A DNA MER1_type 31 188 -1 963 192 28 6 chr1 206409262 206409444 -75784220 - MER5A DNA MER1_type -3 186 1 300 209 45 0 chr1 206409747 206409814 -75783850 + L2 LINE L2 3197 3266 -6 261 0 0 0 chr1 206410082 206410111 -75783553 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 252 309 232 34 chr1 206411351 206411558 -75782106 - L3 LINE CR1 -61 1516 1269 726 138 46 31 chr1 206411619 206411749 -75781915 + MER3 DNA MER1_type 77 208 -1 320 258 205 42 chr1 206411913 206412103 -75781561 + L2 LINE L2 2871 3091 -181 429 294 27 27 chr1 206412316 206412503 -75781161 - L3 LINE CR1 -640 937 751 327 209 0 0 chr1 206412568 206412635 -75781029 - MIR SINE MIR -111 151 85 238 333 172 38 chr1 206412723 206412990 -75780674 - L3 LINE CR1 -852 725 423 225 73 24 24 chr1 206413122 206413163 -75780501 - L3 LINE CR1 -14 1563 1523 786 228 9 58 chr1 206413259 206413483 -75780181 + MIR SINE MIR 48 260 -2 276 312 42 60 chr1 206413573 206413788 -75779876 + MIR SINE MIR 45 255 -7 592 295 112 9 chr1 206413798 206414022 -75779642 - MIR SINE MIR -3 259 13 24 0 0 0 chr1 206414084 206414108 -75779556 + AT_rich Low_complexity Low_complexity 1 24 0 295 252 129 50 chr1 206415477 206415616 -75778048 - MIR SINE MIR -6 256 107 270 268 134 14 chr1 206416571 206416713 -75776951 - MIR3 SINE MIR -2 206 48 315 223 19 48 chr1 206417437 206417540 -75776124 + MIR3 SINE MIR 109 208 0 211 228 18 18 chr1 206417607 206417664 -75776000 + MER5B DNA MER1_type 12 68 -110 1238 134 106 51 chr1 206417776 206418051 -75775613 - MER44D DNA MER2_type -49 560 1 1227 288 108 32 chr1 206418061 206419452 -75774212 - L1ME LINE L1 -582 5565 4069 23 0 0 0 chr1 206419600 206419623 -75774041 + AT_rich Low_complexity Low_complexity 1 23 0 972 294 82 28 chr1 206419800 206420924 -75772740 - L1MEd LINE L1 -4818 1492 249 1788 167 0 19 chr1 206420931 206421271 -75772393 + AluSx SINE Alu 1 334 0 1087 200 14 9 chr1 206422487 206422697 -75770967 + MER20 DNA MER1_type 8 218 -1 289 343 90 67 chr1 206423171 206423471 -75770193 - L2 LINE L2 0 3272 2966 212 339 0 0 chr1 206423592 206423654 -75770010 + L3 LINE CR1 1515 1576 -1 259 233 0 78 chr1 206423691 206423781 -75769883 - L2 LINE L2 0 3313 3231 391 351 83 33 chr1 206423857 206424432 -75769232 - L2 LINE L2 -665 2649 2046 438 125 0 0 chr1 206424713 206424793 -75768871 + (GA)n Simple_repeat Simple_repeat 2 81 0 1492 170 12 102 chr1 206424870 206425193 -75768471 - AluJo SINE Alu -18 294 1 1376 205 15 82 chr1 206425573 206425964 -75767700 - MLT1A1 LTR MaLR 0 365 1 313 318 15 15 chr1 206426023 206426155 -75767509 + MIR SINE MIR 81 212 -50 2342 180 83 37 chr1 206426590 206427190 -75766474 + L1MA9 LINE L1 5660 6287 -25 567 313 44 13 chr1 206428451 206428678 -75764986 + MIR SINE MIR 13 246 -16 185 353 37 52 chr1 206429823 206429959 -75763705 - L2 LINE L2 0 3272 3139 210 354 0 0 chr1 206431282 206431347 -75762317 + L2 LINE L2 3249 3313 0 266 330 75 43 chr1 206431978 206432166 -75761498 + L2 LINE L2 3072 3265 -7 350 258 0 67 chr1 206432456 206432576 -75761088 - MIR SINE MIR -4 258 147 205 226 32 16 chr1 206432746 206432808 -75760856 + MIR SINE MIR 62 124 -84 191 351 108 9 chr1 206434521 206434632 -75759032 + MIR SINE MIR 19 140 -68 646 149 107 8 chr1 206434756 206434877 -75758787 + FLAM_C SINE Alu 1 133 0 341 259 12 0 chr1 206435586 206435667 -75757997 + L2 LINE L2 3226 3307 -6 1780 135 12 75 chr1 206437763 206438096 -75755568 + AluJb SINE Alu 1 312 0 2085 110 0 17 chr1 206438242 206438532 -75755132 - AluSc SINE Alu -24 285 1 257 336 19 19 chr1 206440149 206440253 -75753411 + MIR SINE MIR 46 149 -113 278 267 144 20 chr1 206440728 206440874 -75752790 - MIR SINE MIR -79 183 20 1766 167 10 23 chr1 206444327 206444632 -75749032 + AluJo SINE Alu 1 301 -11 1750 213 116 61 chr1 206444661 206445254 -75748410 - MLT1E2 LTR MaLR 0 626 1 574 323 39 10 chr1 206445320 206445562 -75748102 - MIR SINE MIR -6 256 9 2195 135 128 13 chr1 206447010 206447394 -75746270 - MSTA LTR MaLR 0 428 1 291 326 52 76 chr1 206447420 206447505 -75746159 - L2 LINE L2 -212 3060 2974 369 43 0 0 chr1 206447505 206447552 -75746112 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 326 52 76 chr1 206447552 206448170 -75745494 - L2 LINE L2 -298 2974 2361 2291 98 16 3 chr1 206448488 206448794 -75744870 + AluSq SINE Alu 3 312 -1 222 303 0 0 chr1 206448904 206448970 -75744694 - L2 LINE L2 -527 2787 2722 252 210 70 70 chr1 206450495 206450595 -75743069 - L2 LINE L2 -15 3298 3199 309 289 168 5 chr1 206451029 206451226 -75742438 + MIR SINE MIR 21 249 -13 205 179 0 0 chr1 206453854 206453893 -75739771 + CT-rich Low_complexity Low_complexity 2 40 0 2063 163 22 8 chr1 206454133 206454489 -75739175 - MLT1A1 LTR MaLR 0 365 5 483 18 0 0 chr1 206455939 206455995 -75737669 + (TCCA)n Simple_repeat Simple_repeat 4 59 0 871 256 127 53 chr1 206456008 206456403 -75737261 - L2 LINE L2 -8 3305 2882 22 0 0 0 chr1 206456933 206456955 -75736709 + AT_rich Low_complexity Low_complexity 1 22 0 433 256 50 25 chr1 206457706 206457866 -75735798 + LTR16C LTR ERVL 327 490 -1 780 274 68 11 chr1 206457867 206458130 -75735534 - L2 LINE L2 -481 2833 2556 267 224 336 0 chr1 206458572 206458697 -75734967 + MIR SINE MIR 28 194 -68 2513 37 0 0 chr1 206459022 206459319 -75734345 + AluY SINE Alu 1 297 -14 2551 235 12 41 chr1 206459425 206459740 -75733924 + L1ME1 LINE L1 5361 5683 -483 2085 98 14 10 chr1 206459740 206460036 -75733628 + AluSq SINE Alu 1 297 -16 2551 235 12 41 chr1 206460036 206460455 -75733209 + L1ME1 LINE L1 5683 6074 -92 492 305 180 5 chr1 206460948 206461360 -75732304 - L2 LINE L2 -240 3073 2564 1152 224 38 0 chr1 206462541 206462778 -75730886 + MLT1J2 LTR MaLR 1 246 -204 725 250 88 0 chr1 206462780 206462972 -75730692 + MER3 DNA MER1_type 1 209 0 242 303 128 0 chr1 206462977 206463086 -75730578 + MLT1J2 LTR MaLR 282 404 -46 300 300 22 0 chr1 206463361 206463451 -75730213 + MIR SINE MIR 51 142 -66 1153 36 7 0 chr1 206463616 206463754 -75729910 + L1PA3 LINE L1 6014 6152 -3 569 212 0 27 chr1 206464570 206464754 -75728910 + CT-rich Low_complexity Low_complexity 2 180 0 342 209 0 35 chr1 206464926 206465012 -75728652 - L2 LINE L2 0 3313 3231 745 186 119 42 chr1 206465382 206465575 -75728089 + MER3 DNA MER1_type 1 208 -1 430 359 77 20 chr1 206466677 206466925 -75726739 - L3 LINE CR1 -124 1453 1192 2997 221 32 14 chr1 206467099 206467187 -75726477 + MER82 DNA MER2_type 10 95 -558 2212 122 20 37 chr1 206467187 206467462 -75726202 - MER7A DNA MER2_type -2692 346 79 2141 101 3 10 chr1 206467462 206467760 -75725904 + AluSp SINE Alu 1 296 -17 2212 122 20 37 chr1 206467760 206467838 -75725826 - MER7A DNA MER2_type -2959 79 1 2997 221 32 14 chr1 206467838 206468382 -75725282 + MER82 DNA MER2_type 95 653 0 290 26 26 0 chr1 206469158 206469197 -75724467 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 707 292 66 41 chr1 206469776 206470170 -75723494 + L2 LINE L2 2352 2755 -559 802 250 176 35 chr1 206470170 206470574 -75723090 - LTR33A LTR ERVL 0 523 63 405 81 0 0 chr1 206470739 206470801 -75722863 + (TC)n Simple_repeat Simple_repeat 1 62 0 315 0 0 0 chr1 206470801 206470836 -75722828 + (TG)n Simple_repeat Simple_repeat 2 36 0 286 200 46 0 chr1 206471159 206471224 -75722440 + L2 LINE L2 2991 3058 -214 887 255 69 4 chr1 206472013 206472244 -75721420 + MIR SINE MIR 17 262 0 1869 146 3 3 chr1 206472311 206472613 -75721051 - AluJb SINE Alu -10 302 1 343 208 421 6 chr1 206473031 206473190 -75720474 + MIR SINE MIR 32 256 -6 260 237 40 26 chr1 206473197 206473273 -75720391 + MIR SINE MIR 119 195 -67 * 4493 218 60 83 chr1 206473268 206474724 -75718940 - L2 LINE L2 0 3313 1914 1708 213 116 49 chr1 206474724 206475232 -75718432 - MLT1F LTR MaLR 0 542 1 4493 218 60 83 chr1 206475232 206475559 -75718105 - L2 LINE L2 -1399 1914 1581 1919 91 12 0 chr1 206476197 206476451 -75717213 - AluSx SINE Alu -53 259 3 625 231 21 14 chr1 206477262 206477405 -75716259 - MIR SINE MIR -66 196 53 386 243 63 121 chr1 206478328 206478534 -75715130 + L3 LINE CR1 1354 1547 -30 795 218 199 34 chr1 206479706 206480140 -75713524 + L2 LINE L2 2607 3111 -202 212 313 30 30 chr1 206480297 206480364 -75713300 + L2 LINE L2 3206 3272 0 374 247 143 3 chr1 206481702 206481842 -75711822 + MIR SINE MIR 18 176 -59 439 281 40 88 chr1 206481901 206482175 -75711489 + MIR SINE MIR 2 262 0 474 272 94 73 chr1 206482574 206483027 -75710637 - MLT1L LTR MaLR -16 572 98 231 118 0 0 chr1 206483440 206483474 -75710190 + HAL1 LINE L1 1422 1455 -1052 201 289 0 0 chr1 206484472 206484524 -75709140 + CT-rich Low_complexity Low_complexity 2 53 0 640 230 69 66 chr1 206484524 206484748 -75708916 + MLT1J2 LTR MaLR 37 259 -191 989 197 5 11 chr1 206484767 206484955 -75708709 + MER58A DNA MER1_type 37 223 -1 598 212 31 98 chr1 206484957 206485154 -75708510 + MLT1J2 LTR MaLR 258 444 -2 372 246 109 125 chr1 206485156 206485250 -75708414 - MIR SINE MIR 0 262 168 1780 124 0 8 chr1 206485250 206485517 -75708147 - AluSg1 SINE Alu -10 299 35 372 246 109 125 chr1 206485517 206485678 -75707986 - MIR SINE MIR -94 168 11 465 335 56 12 chr1 206485734 206485895 -75707769 - MIR SINE MIR -75 187 20 475 294 16 8 chr1 206486335 206486461 -75707203 + MER5A DNA MER1_type 57 183 -6 894 172 13 7 chr1 206487936 206488087 -75705577 + MER58B DNA MER1_type 169 320 -21 413 197 53 0 chr1 206488082 206488158 -75705506 + MER58B DNA MER1_type 262 341 0 * 718 235 41 6 chr1 206488177 206488347 -75705317 - MLT1I LTR MaLR -233 176 1 214 345 48 0 chr1 206488347 206488431 -75705233 - L2 LINE L2 -27 3286 3199 458 313 61 14 chr1 206489544 206489691 -75703973 + MIR3 SINE MIR 16 169 -39 210 241 0 69 chr1 206489808 206489866 -75703798 + L2 LINE L2 3254 3307 -6 405 288 95 89 chr1 206490337 206490467 -75703197 + L2 LINE L2 2937 3065 -207 2225 107 0 0 chr1 206490467 206490765 -75702899 - AluSx SINE Alu -14 298 1 405 288 95 89 chr1 206490765 206490960 -75702704 + L2 LINE L2 3065 3264 -8 1664 161 28 0 chr1 206491145 206491431 -75702233 + AluJb SINE Alu 1 294 -18 241 259 82 12 chr1 206491656 206491741 -75701923 + L2 LINE L2 3153 3243 -70 239 253 92 0 chr1 206491784 206491871 -75701793 - L2 LINE L2 -9 3304 3210 224 242 11 63 chr1 206491889 206491984 -75701680 + CT-rich Low_complexity Low_complexity 3 92 0 793 219 47 90 chr1 206493486 206493719 -75699945 - MIR SINE MIR -30 232 10 306 276 23 11 chr1 206493784 206493871 -75699793 + MIR SINE MIR 23 110 -98 798 290 73 9 chr1 206494284 206494601 -75699063 - L2 LINE L2 -1179 2135 1799 501 241 22 22 chr1 206494745 206494882 -75698782 - LTR45 LTR ERV1 0 525 389 3171 227 146 141 chr1 206495335 206497013 -75696651 + L2 LINE L2 237 2046 -1268 660 186 25 0 chr1 206497013 206497131 -75696533 - FLAM_A SINE Alu -3 139 19 3171 227 146 141 chr1 206497131 206497692 -75695972 + L2 LINE L2 2046 2603 -711 481 250 59 59 chr1 206497711 206497863 -75695801 - MIR SINE MIR -27 235 84 1092 278 121 38 chr1 206498107 206498553 -75695111 + L2 LINE L2 2829 3311 -2 296 280 32 21 chr1 206499341 206499434 -75694230 - MIR SINE MIR -50 212 119 188 186 186 57 chr1 206499477 206499547 -75694117 - MIR SINE MIR -1 261 183 546 287 107 0 chr1 206499707 206499857 -75693807 + L2 LINE L2 3102 3267 -5 204 40 0 0 chr1 206499858 206499883 -75693781 + (CAA)n Simple_repeat Simple_repeat 2 26 0 375 307 102 8 chr1 206499885 206500012 -75693652 - MIR3 SINE MIR -66 142 4 195 388 12 0 chr1 206500012 206500077 -75693587 + L2 LINE L2 3193 3258 -14 227 308 162 0 chr1 206500072 206500189 -75693475 + MIR SINE MIR 52 187 -75 1159 303 241 4 chr1 206500224 206501192 -75692472 + L2 LINE L2 2109 3309 -4 359 287 81 15 chr1 206501445 206501581 -75692083 + MIR SINE MIR 82 226 -36 194 298 0 0 chr1 206502145 206502192 -75691472 + MIR SINE MIR 216 262 0 263 254 16 0 chr1 206502209 206502272 -75691392 - MIR3 SINE MIR -46 162 99 21 0 0 0 chr1 206502732 206502753 -75690911 + AT_rich Low_complexity Low_complexity 1 21 0 201 283 26 80 chr1 206504407 206504520 -75689144 - MIR3 SINE MIR 0 208 102 241 248 0 57 chr1 206505187 206505344 -75688320 + (CATCC)n Simple_repeat Simple_repeat 4 151 0 318 238 0 55 chr1 206505452 206505616 -75688048 + (CATCC)n Simple_repeat Simple_repeat 2 156 0 309 255 0 53 chr1 206505762 206505950 -75687714 + (CATCC)n Simple_repeat Simple_repeat 3 180 0 281 188 29 65 chr1 206506017 206506155 -75687509 + (CACCT)n Simple_repeat Simple_repeat 4 136 0 352 242 0 65 chr1 206506159 206506345 -75687319 + (CATCC)n Simple_repeat Simple_repeat 4 177 0 356 309 48 0 chr1 206506372 206506540 -75687124 + C-rich Low_complexity Low_complexity 4 179 0 180 111 0 0 chr1 206506636 206506663 -75687001 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 421 264 103 51 chr1 206506681 206506976 -75686688 - L1ME4a LINE L1 -202 5919 5624 2180 123 0 0 chr1 206507755 206508055 -75685609 + AluSx SINE Alu 1 300 -12 215 125 0 0 chr1 206508086 206508126 -75685538 + MIR SINE MIR 81 120 -88 301 238 7 146 chr1 206508629 206508780 -75684884 - MER5B DNA MER1_type -45 133 4 1485 104 61 0 chr1 206509030 206509242 -75684422 - MER61E LTR ERV1 -4 565 341 291 163 0 20 chr1 206509264 206509313 -75684351 - MER61E LTR ERV1 -405 164 117 277 260 0 90 chr1 206509290 206509390 -75684274 - MER61E LTR ERV1 -380 189 99 * 547 181 24 39 chr1 206509393 206509520 -75684144 - LTR25 LTR ERV1 -438 356 232 375 256 83 83 chr1 206509487 206509643 -75684021 - MER61E LTR ERV1 -413 156 1 * 301 281 135 0 chr1 206509703 206509799 -75683865 + MIR SINE MIR 43 151 -111 21 0 0 0 chr1 206511217 206511238 -75682426 + AT_rich Low_complexity Low_complexity 1 21 0 251 48 0 0 chr1 206511268 206511310 -75682354 + L1PA2 LINE L1 6114 6155 0 570 234 24 115 chr1 206511496 206511656 -75682008 + MIR3 SINE MIR 10 148 -60 1183 213 77 3 chr1 206511656 206511956 -75681708 - MER33 DNA MER1_type 0 324 3 570 234 24 115 chr1 206511956 206512004 -75681660 + MIR3 SINE MIR 148 199 -9 804 254 46 23 chr1 206512360 206512667 -75680997 - L1ME4a LINE L1 0 6121 5808 690 230 105 15 chr1 206512925 206513125 -75680539 + MIR SINE MIR 22 239 -23 244 151 27 68 chr1 206513127 206513200 -75680464 - L1ME4a LINE L1 -340 5781 5712 452 299 178 43 chr1 206513216 206513711 -75679953 - L2 LINE L2 -12 3301 2722 432 208 10 40 chr1 206513719 206513820 -75679844 - MER63A DNA MER1_type 0 210 113 367 224 28 28 chr1 206513839 206513946 -75679718 - Tigger5 DNA MER2_type 0 2323 2217 296 204 0 0 chr1 206513932 206513986 -75679678 - Tigger5 DNA MER2_type -2268 55 2 * 364 106 0 0 chr1 206514021 206514068 -75679596 - MER63A DNA MER1_type -163 47 1 241 292 0 31 chr1 206514075 206514140 -75679524 - L2 LINE L2 -599 2715 2653 235 182 0 0 chr1 206514159 206514203 -75679461 - L1ME LINE L1 -453 5668 5625 235 275 101 9 chr1 206514323 206514371 -75679293 + L2 LINE L2 2947 2989 -324 189 0 0 0 chr1 206514371 206514392 -75679272 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 235 275 101 9 chr1 206514392 206514452 -75679212 + L2 LINE L2 2989 3065 -248 343 153 17 0 chr1 206514495 206514554 -75679110 + L2 LINE L2 3254 3313 0 6003 134 25 14 chr1 206514780 206515857 -75677807 + L1MA7 LINE L1 5193 6285 -6 1015 301 88 10 chr1 206516132 206516528 -75677136 + L2 LINE L2 1609 2035 -1279 375 305 158 25 chr1 206516727 206517169 -75676495 + L1M4 LINE L1 4528 5028 -1118 416 304 48 48 chr1 206517504 206517734 -75675930 + L3b LINE CR1 1240 1469 -114 1930 124 0 3 chr1 206518350 206518660 -75675004 - AluSx SINE Alu 0 310 2 213 401 109 7 chr1 206519771 206519908 -75673756 - MIR SINE MIR -56 206 56 2760 84 3 3 chr1 206520080 206520435 -75673229 - THE1A LTR MaLR 0 355 1 12208 90 2 0 chr1 206520435 206522011 -75671653 - THE1A-int LTR MaLR 0 1580 1 2536 103 6 19 chr1 206522011 206522371 -75671293 - THE1A LTR MaLR 0 355 1 342 279 114 62 chr1 206522386 206522814 -75670850 + L1M4c LINE L1 853 2674 -3889 1966 152 53 3 chr1 206522995 206523337 -75670327 + MLT1A1 LTR MaLR 5 363 -2 504 291 105 19 chr1 206523535 206523745 -75669919 - MIR SINE MIR -15 247 20 653 269 63 40 chr1 206524060 206524283 -75669381 + MIR SINE MIR 2 229 -33 235 374 101 7 chr1 206525319 206525458 -75668206 + L2 LINE L2 3121 3272 0 634 291 65 6 chr1 206525602 206525966 -75667698 + MLT1J2 LTR MaLR 88 447 -3 21 0 0 0 chr1 206526188 206526209 -75667455 + AT_rich Low_complexity Low_complexity 1 21 0 420 294 19 95 chr1 206526773 206526984 -75666680 - MIR SINE MIR -66 196 2 442 319 120 55 chr1 206528377 206528876 -75664788 + L2 LINE L2 2713 3253 -19 445 245 20 0 chr1 206530179 206530281 -75663383 + MIR SINE MIR 65 168 -94 258 333 40 0 chr1 206530756 206530855 -75662809 + MIR SINE MIR 50 152 -110 193 283 0 0 chr1 206531670 206531716 -75661948 + L2 LINE L2 3268 3313 0 186 139 83 0 chr1 206532204 206532240 -75661424 + L2 LINE L2 3263 3301 -12 215 150 0 25 chr1 206532788 206532828 -75660836 + (TCTCC)n Simple_repeat Simple_repeat 3 41 0 328 317 140 29 chr1 206532953 206533316 -75660348 + L2 LINE L2 2678 3078 -194 197 278 37 0 chr1 206533380 206533434 -75660230 + L2 LINE L2 3248 3303 -10 497 290 30 15 chr1 206533870 206534001 -75659663 + MIR SINE MIR 24 156 -106 378 0 0 0 chr1 206534048 206534090 -75659574 + (TG)n Simple_repeat Simple_repeat 1 42 0 361 202 96 21 chr1 206534561 206534655 -75659009 - L2 LINE L2 -4 3268 3168 403 318 115 16 chr1 206535350 206535542 -75658122 + MIR SINE MIR 2 212 -50 305 311 13 73 chr1 206535914 206536065 -75657599 + MIR SINE MIR 1 142 -66 812 184 12 6 chr1 206536093 206536256 -75657408 - MER104 DNA Tc2 -1 179 16 315 274 74 42 chr1 206536731 206536921 -75656743 - L3 LINE CR1 -299 1278 1083 262 270 211 3 chr1 206536946 206537287 -75656377 + L1ME4a LINE L1 5709 6120 -1 360 209 0 0 chr1 206542162 206542229 -75651435 + MER103 DNA DNA 23 89 -77 252 0 0 0 chr1 206542258 206542286 -75651378 + (CA)n Simple_repeat Simple_repeat 1 28 0 272 306 68 48 chr1 206543815 206543962 -75649702 + L2 LINE L2 3164 3313 0 250 212 263 40 chr1 206544467 206544566 -75649098 + L2 LINE L2 3152 3272 0 2228 99 0 10 chr1 206544760 206545073 -75648591 + AluY SINE Alu 1 310 -1 2075 135 0 0 chr1 206547435 206547747 -75645917 + AluSx SINE Alu 1 312 0 206 233 0 0 chr1 206548679 206548722 -75644942 + CT-rich Low_complexity Low_complexity 1 43 0 288 342 50 40 chr1 206599897 206600096 -75593568 + L2 LINE L2 3072 3272 0 373 258 0 67 chr1 206600375 206600495 -75593169 - MIR SINE MIR -4 258 147 228 242 30 15 chr1 206600661 206600727 -75592937 + MIR SINE MIR 58 124 -84 221 323 95 47 chr1 206602363 206602555 -75591109 + MIR SINE MIR 19 217 -45 667 149 107 8 chr1 206602598 206602719 -75590945 + FLAM_C SINE Alu 1 133 0 349 261 11 11 chr1 206603428 206603516 -75590148 + L2 LINE L2 3226 3313 0 287 141 16 0 chr1 206603752 206603816 -75589848 + (CA)n Simple_repeat Simple_repeat 2 66 0 201 210 16 32 chr1 206605212 206605274 -75588390 + (CCCG)n Simple_repeat Simple_repeat 4 64 0 237 65 0 0 chr1 206605895 206605926 -75587738 + (T)n Simple_repeat Simple_repeat 1 31 0 769 233 138 13 chr1 206608948 206609180 -75584484 + MIR SINE MIR 2 262 0 482 274 170 0 chr1 206609276 206609411 -75584253 + MER5A DNA MER1_type 31 188 -1 198 0 0 0 chr1 206612959 206612981 -75580683 + (T)n Simple_repeat Simple_repeat 1 22 0 966 192 28 6 chr1 206613722 206613904 -75579760 - MER5A DNA MER1_type -3 186 1 327 229 29 0 chr1 206614204 206614274 -75579390 + L2 LINE L2 3195 3266 -6 261 0 0 0 chr1 206614542 206614571 -75579093 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 328 316 226 33 chr1 206615810 206616022 -75577642 - L3 LINE CR1 -61 1516 1264 350 121 35 0 chr1 206616078 206616136 -75577528 + Charlie5 DNA MER1_type 30 89 -2523 299 203 0 63 chr1 206616280 206616359 -75577305 + L2 LINE L2 3018 3091 -181 22 0 0 0 chr1 206616532 206616554 -75577110 + AT_rich Low_complexity Low_complexity 1 22 0 494 294 27 27 chr1 206616573 206616760 -75576904 - L3 LINE CR1 -640 937 751 356 209 0 0 chr1 206616825 206616892 -75576772 - MIR SINE MIR -111 151 85 336 333 172 38 chr1 206616980 206617247 -75576417 - L3 LINE CR1 -852 725 423 248 190 35 17 chr1 206617379 206617437 -75576227 - L3 LINE CR1 -14 1563 1505 876 228 9 58 chr1 206617516 206617740 -75575924 + MIR SINE MIR 48 260 -2 355 312 42 60 chr1 206617830 206618045 -75575619 + MIR SINE MIR 45 255 -7 692 290 108 13 chr1 206618055 206618286 -75575378 - MIR SINE MIR -3 259 7 24 0 0 0 chr1 206618341 206618365 -75575299 + AT_rich Low_complexity Low_complexity 1 24 0 351 252 129 50 chr1 206619734 206619873 -75573791 - MIR SINE MIR -6 256 107 321 268 134 14 chr1 206620829 206620971 -75572693 - MIR3 SINE MIR -2 206 48 340 233 19 48 chr1 206621695 206621798 -75571866 + MIR3 SINE MIR 109 208 0 770 250 0 6 chr1 206621865 206622033 -75571631 + MER5B DNA MER1_type 12 178 0 686 330 95 20 chr1 206622441 206622531 -75571133 - L3 LINE CR1 -36 1541 1459 867 228 78 0 chr1 206622531 206622724 -75570940 - MER63A DNA MER1_type -1 209 2 686 330 95 20 chr1 206622724 206622991 -75570673 - L3 LINE CR1 -118 1459 1157 210 150 0 0 chr1 206623938 206623978 -75569686 + (GA)n Simple_repeat Simple_repeat 2 41 0 2075 135 0 0 chr1 206624910 206625222 -75568442 - AluSx SINE Alu 0 312 1 2228 99 0 10 chr1 206627704 206628017 -75565647 - AluY SINE Alu -1 310 1 250 212 263 40 chr1 206628211 206628310 -75565354 - L2 LINE L2 0 3272 3152 272 306 68 48 chr1 206628815 206628962 -75564702 - L2 LINE L2 0 3313 3164 351 0 0 0 chr1 206630491 206630530 -75563134 + (TG)n Simple_repeat Simple_repeat 2 40 0 360 209 0 0 chr1 206630560 206630627 -75563037 - MER103 DNA DNA -77 89 23 5418 75 16 8 chr1 206635431 206636137 -75557527 + L1PA10 LINE L1 5443 6153 -15 386 287 63 28 chr1 206636339 206636482 -75557182 - L2 LINE L2 0 3272 3125 2250 101 0 0 chr1 206636589 206636885 -75556779 + AluSg SINE Alu 1 296 -14 280 343 67 55 chr1 206638059 206638403 -75555261 - L3 LINE CR1 -2 1575 1228 315 308 35 56 chr1 206638717 206638860 -75554804 - MIR3 SINE MIR -50 158 19 329 273 79 97 chr1 206639908 206640073 -75553591 - L1ME4a LINE L1 -33 6088 5927 1714 143 3 49 chr1 206640115 206640423 -75553241 + AluJb SINE Alu 1 294 -18 557 200 29 14 chr1 206640494 206640634 -75553030 - L1ME4a LINE L1 -378 5743 5602 568 220 8 17 chr1 206641364 206641482 -75552182 + FLAM_A SINE Alu 1 117 -16 199 184 26 0 chr1 206642960 206642998 -75550666 - MER5B DNA MER1_type -16 162 124 332 250 21 100 chr1 206643057 206643197 -75550467 + MER5B DNA MER1_type 50 178 0 251 293 66 31 chr1 206643221 206643373 -75550291 - MER5A DNA MER1_type -14 175 7 266 261 141 11 chr1 206643388 206643480 -75550184 + L3 LINE CR1 1472 1575 -2 374 300 18 0 chr1 206644504 206644614 -75549050 - L2 LINE L2 -1 3312 3201 393 58 0 0 chr1 206644945 206644997 -75548667 + (CA)n Simple_repeat Simple_repeat 2 53 0 4000 265 86 79 chr1 206647222 206649574 -75544090 - L2 LINE L2 0 3313 942 2273 50 0 0 chr1 206649596 206649907 -75543757 + AluY SINE Alu 1 311 0 667 221 70 23 chr1 206651039 206651211 -75542453 + MER5A DNA MER1_type 10 189 0 857 168 43 0 chr1 206651575 206651736 -75541928 + FAM SINE Alu 1 41 -8 180 0 0 0 chr1 206652410 206652430 -75541234 + (TA)n Simple_repeat Simple_repeat 2 21 0 196 176 108 157 chr1 206652449 206652551 -75541113 - L3 LINE CR1 -864 713 617 30 45 0 0 chr1 206653542 206653586 -75540078 + AT_rich Low_complexity Low_complexity 1 44 0 688 280 52 5 chr1 206653694 206653887 -75539777 + MIR SINE MIR 56 257 -5 197 182 0 23 chr1 206654055 206654099 -75539565 + L2 LINE L2 3017 3059 -213 244 259 28 74 chr1 206655033 206655141 -75538523 + MIR SINE MIR 114 216 -46 2214 96 0 0 chr1 206655537 206655830 -75537834 - AluSg SINE Alu -17 293 1 29 0 0 0 chr1 206656167 206656196 -75537468 + AT_rich Low_complexity Low_complexity 1 29 0 1781 131 4 0 chr1 206656432 206656691 -75536973 - AluSq SINE Alu -53 260 1 336 299 104 35 chr1 206656716 206656860 -75536804 + MIR SINE MIR 59 212 -50 271 255 96 0 chr1 206657442 206657536 -75536128 + LTR33 LTR ERVL 21 123 -398 469 311 33 14 chr1 206657622 206657834 -75535830 + LTR33 LTR ERVL 306 521 0 269 252 26 113 chr1 206657970 206658121 -75535543 - MIR SINE MIR -46 216 79 496 336 46 38 chr1 206658510 206658876 -75534788 - L2 LINE L2 -19 3294 2926 772 304 92 37 chr1 206658964 206659580 -75534084 - L2 LINE L2 -511 2803 2154 584 233 14 14 chr1 206662340 206662486 -75531178 + MIR SINE MIR 117 262 0 495 159 0 11 chr1 206663252 206663340 -75530324 + Tigger4(Zombi) DNA MER2_type 2645 2731 0 1164 264 123 33 chr1 206663342 206664120 -75529544 - L2 LINE L2 -31 3282 2432 310 130 0 116 chr1 206664266 206664335 -75529329 + L2 LINE L2 3207 3267 -5 1523 276 112 28 chr1 206664697 206665796 -75527868 + L2 LINE L2 2118 3308 -5 388 322 100 30 chr1 206665944 206666214 -75527450 - L2 LINE L2 -20 3293 3005 3327 81 2 24 chr1 206666238 206666705 -75526959 + L1PA11 LINE L1 5718 6174 0 244 274 83 60 chr1 206667549 206667637 -75526027 + MIR SINE MIR 40 125 -137 2459 114 8 22 chr1 206667637 206668006 -75525658 + THE1B LTR MaLR 1 364 0 244 274 83 60 chr1 206668006 206668115 -75525549 + MIR SINE MIR 125 255 -7 363 44 0 0 chr1 206669042 206669087 -75524577 + (CA)n Simple_repeat Simple_repeat 2 46 0 399 306 122 52 chr1 206671730 206672360 -75521304 - L3 LINE CR1 -60 1517 844 259 326 0 0 chr1 206672361 206672453 -75521211 - L3 LINE CR1 -910 667 576 633 156 12 9 chr1 206672529 206672678 -75520986 - L1ME LINE L1 -321 5800 5672 1059 103 7 0 chr1 206672678 206672823 -75520841 - L1PA8A LINE L1 -5 6126 5981 5957 116 53 7 chr1 206672930 206673519 -75520145 + Tigger1 DNA MER2_type 1457 2106 -312 2166 163 50 17 chr1 206673519 206673936 -75519728 + MSTB1 LTR MaLR 1 431 -1 5957 116 53 7 chr1 206673936 206674263 -75519401 + Tigger1 DNA MER2_type 2106 2416 -2 1691 154 68 38 chr1 206675091 206675460 -75518204 + MLT1B LTR MaLR 3 382 -8 227 310 23 23 chr1 206676010 206676097 -75517567 + MIR SINE MIR 97 183 -79 265 250 60 0 chr1 206676867 206676951 -75516713 + MER91C DNA MER1_type 51 139 -1 2043 253 73 33 chr1 206677760 206678833 -75514831 + L2 LINE L2 2196 3312 -1 431 288 9 0 chr1 206679004 206679115 -75514549 - L2 LINE L2 -5 3308 3197 2122 133 3 3 chr1 206679243 206679544 -75514120 - AluSx SINE Alu -11 301 1 188 273 80 57 chr1 206680426 206680514 -75513150 - L2 LINE L2 -2 3270 3181 241 132 0 0 chr1 206680542 206680580 -75513084 + L1M4 LINE L1 2223 2260 -3886 1412 223 74 124 chr1 206680587 206681083 -75512581 + L1M4 LINE L1 3074 3593 -2553 2122 123 10 10 chr1 206681083 206681392 -75512272 - AluSc SINE Alu 0 309 1 1412 223 74 124 chr1 206681392 206681466 -75512198 + L1M4 LINE L1 3593 3669 -2477 203 0 37 0 chr1 206681466 206681493 -75512171 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 1412 223 74 124 chr1 206681493 206682256 -75511408 + L1M4 LINE L1 3669 4341 -1805 3321 133 8 2 chr1 206682394 206682926 -75510738 - L1P LINE L1 -1850 4296 3762 460 286 0 0 chr1 206682931 206683050 -75510614 - MIR SINE MIR -96 166 48 1775 153 14 24 chr1 206683052 206683346 -75510318 - AluJb SINE Alu -21 291 1 393 352 7 14 chr1 206683450 206683595 -75510069 - L3 LINE CR1 -1114 463 320 202 167 24 0 chr1 206683635 206683677 -75509987 - L2 LINE L2 -17 3255 3213 268 302 47 23 chr1 206683899 206684028 -75509636 + MIR SINE MIR 22 153 -109 317 301 80 58 chr1 206686937 206687213 -75506451 + L3 LINE CR1 1029 1310 -267 274 285 139 7 chr1 206687355 206687492 -75506172 - L2 LINE L2 -5 3308 3154 279 273 35 42 chr1 206687724 206687867 -75505797 - L2 LINE L2 -542 2772 2631 257 259 12 12 chr1 206689590 206689671 -75503993 + MIR SINE MIR 23 103 -105 24 32 0 0 chr1 206689804 206689835 -75503829 + AT_rich Low_complexity Low_complexity 1 31 0 2078 142 0 0 chr1 206690765 206691061 -75502603 - AluSx SINE Alu -16 296 1 373 259 37 44 chr1 206691076 206691211 -75502453 - MIR SINE MIR -72 190 57 386 279 110 7 chr1 206691369 206691523 -75502141 + MIR SINE MIR 22 191 -71 739 218 67 0 chr1 206692830 206692995 -75500669 - MER5A DNA MER1_type -13 176 1 306 295 151 6 chr1 206693082 206693248 -75500416 - L2 LINE L2 0 3313 3124 814 184 12 6 chr1 206693901 206694064 -75499600 + MER104 DNA Tc2 16 179 -1 255 338 7 66 chr1 206694092 206694243 -75499421 - MIR SINE MIR -66 142 1 340 288 130 2 chr1 206694615 206694791 -75498873 - MIR SINE MIR -50 212 18 321 213 96 21 chr1 206695502 206695596 -75498068 + L2 LINE L2 3168 3268 -4 342 0 0 0 chr1 206696776 206696814 -75496850 + (CA)n Simple_repeat Simple_repeat 1 38 0 444 271 33 16 chr1 206696861 206696983 -75496681 - MIR SINE MIR -106 156 33 181 250 23 0 chr1 206697438 206697482 -75496182 - L2 LINE L2 -21 3251 3207 286 357 25 25 chr1 206697546 206697703 -75495961 - L2 LINE L2 -194 3078 2922 193 286 14 0 chr1 206697802 206697872 -75495792 - L2 LINE L2 -517 2797 2727 215 150 0 25 chr1 206698034 206698074 -75495590 + (GGAGA)n Simple_repeat Simple_repeat 3 41 0 227 333 40 0 chr1 206700007 206700106 -75493558 - MIR SINE MIR -110 152 50 424 198 12 0 chr1 206700597 206700683 -75492981 - MIR SINE MIR -111 151 65 327 326 119 62 chr1 206701986 206702388 -75491276 - L2 LINE L2 -19 3253 2829 380 361 0 14 chr1 206703878 206704031 -75489633 + MIR SINE MIR 2 153 -55 21 0 0 0 chr1 206704653 206704674 -75488990 + AT_rich Low_complexity Low_complexity 1 21 0 620 263 63 5 chr1 206704896 206705086 -75488578 - MLT1J2 LTR MaLR -3 447 247 357 265 31 10 chr1 206705162 206705260 -75488404 - MLT1J LTR MaLR -324 187 88 220 348 116 0 chr1 206705404 206705516 -75488148 - L2 LINE L2 0 3272 3148 551 274 63 40 chr1 206706579 206706802 -75486862 - MIR SINE MIR -33 229 2 425 253 74 19 chr1 206707165 206707327 -75486337 + MIR SINE MIR 77 247 -15 2002 146 53 3 chr1 206707525 206707867 -75485797 - MLT1A1 LTR MaLR -2 363 5 2649 99 6 28 chr1 206708487 206708850 -75484814 + THE1A LTR MaLR 1 355 0 12748 92 2 0 chr1 206708850 206710427 -75483237 + THE1A-int LTR MaLR 1 1580 0 2918 82 3 3 chr1 206710427 206710782 -75482882 + THE1A LTR MaLR 1 355 0 195 401 109 7 chr1 206710954 206711091 -75482573 + MIR SINE MIR 56 206 -56 2031 124 0 3 chr1 206712202 206712512 -75481152 + AluSx SINE Alu 2 310 0 368 304 48 48 chr1 206713128 206713358 -75480306 - L3b LINE CR1 -114 1469 1240 851 309 130 26 chr1 206713694 206714564 -75479100 - L1M4 LINE L1 -1118 5028 4069 968 85 16 0 chr1 206714960 206715089 -75478575 + L1PB2 LINE L1 6019 6149 -2 2155 118 3 0 chr1 206715815 206716102 -75477562 - AluSx SINE Alu -24 288 1 704 283 101 73 chr1 206716113 206716739 -75476925 - HAL1 LINE L1 -1027 1480 838 2364 109 3 0 chr1 206717202 206717514 -75476150 - AluSq SINE Alu 0 313 1 236 226 57 24 chr1 206717730 206717832 -75475832 + MIR3 SINE MIR 104 205 -45 698 200 14 7 chr1 206717838 206717978 -75475686 - MIR SINE MIR -30 232 92 318 263 13 0 chr1 206717988 206718064 -75475600 + MIR SINE MIR 156 232 -30 291 219 16 16 chr1 206718531 206718595 -75475069 + L2 LINE L2 3208 3271 -1 184 254 0 73 chr1 206718647 206718702 -75474962 - L2 LINE L2 -91 3222 3172 193 225 0 0 chr1 206719121 206719161 -75474503 + L2 LINE L2 2868 2907 -407 221 240 163 93 chr1 206719353 206719482 -75474182 + L2 LINE L2 3176 3313 0 186 71 0 0 chr1 206719498 206719526 -75474138 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 186 211 19 58 chr1 206720494 206720546 -75473118 + L2 LINE L2 3264 3313 0 1328 290 101 18 chr1 206720597 206720987 -75472677 + MER34 LTR ERV1 5 446 -96 1294 155 82 5 chr1 206720987 206721206 -75472458 + MER46A DNA MER2_type 1 236 0 1328 290 101 18 chr1 206721206 206721311 -75472353 + MER34 LTR ERV1 446 541 -1 433 138 0 0 chr1 206721898 206721956 -75471708 + MIR SINE MIR 24 81 -181 1479 198 119 70 chr1 206721957 206722411 -75471253 + MLT1F LTR MaLR 29 504 -38 2637 110 16 8 chr1 206722515 206722887 -75470777 + THE1C LTR MaLR 1 375 0 441 247 62 20 chr1 206723006 206723152 -75470512 - MER103 DNA DNA -14 152 1 960 175 20 75 chr1 206723216 206723416 -75470248 - MER5A DNA MER1_type 0 189 1 3866 169 69 20 chr1 206723450 206723499 -75470165 + L1MB7 LINE L1 5353 5398 -786 1587 198 47 31 chr1 206723499 206723858 -75469806 + MLT1A1 LTR MaLR 1 365 0 3866 169 69 20 chr1 206723858 206724601 -75469063 + L1MB7 LINE L1 5398 6184 0 470 240 199 14 chr1 206725049 206725195 -75468469 - MER5A DNA MER1_type 0 189 17 265 289 211 7 chr1 206727586 206727738 -75465926 - MIR3 SINE MIR -23 185 3 2266 118 0 3 chr1 206728234 206728540 -75465124 - AluSx SINE Alu -7 305 1 192 184 41 20 chr1 206728674 206728723 -75464941 + L2 LINE L2 3219 3268 -4 232 319 42 62 chr1 206731450 206731594 -75462070 + L2 LINE L2 3132 3272 0 645 295 48 18 chr1 206732742 206732969 -75460695 - MIR SINE MIR -16 246 13 1683 194 106 73 chr1 206734231 206734807 -75458857 - L1MA9 LINE L1 -25 6287 5693 346 228 107 30 chr1 206735432 206735629 -75458035 - L1ME LINE L1 -696 5474 5263 23 54 0 0 chr1 206735707 206735744 -75457920 + AT_rich Low_complexity Low_complexity 1 37 0 247 314 23 0 chr1 206736273 206736359 -75457305 + L2 LINE L2 3221 3308 -5 180 111 0 0 chr1 206737723 206737750 -75455914 + L2 LINE L2 2726 2752 -562 223 189 0 19 chr1 206738045 206738098 -75455566 + L2 LINE L2 3262 3313 0 347 196 157 0 chr1 206738187 206738289 -75455375 - L1ME4a LINE L1 -2 6119 6002 232 245 0 0 chr1 206738545 206738598 -75455066 - MIR3 SINE MIR 0 208 156 242 281 104 52 chr1 206738751 206738886 -75454778 - MIR3 SINE MIR -46 162 21 5780 144 34 17 chr1 206738924 206739878 -75453786 + Tigger1 DNA MER2_type 1 970 -1448 197 256 141 83 chr1 206740141 206740297 -75453367 - MIR SINE MIR -14 248 84 258 239 0 60 chr1 206740576 206740643 -75453021 - L2 LINE L2 -1 3312 3250 1080 256 59 26 chr1 206742117 206742538 -75451126 - L1ME LINE L1 -1062 5084 4650 1778 167 91 0 chr1 206742538 206742867 -75450797 - Tigger2 DNA MER2_type -10 2708 2350 * 3952 110 20 17 chr1 206742850 206743452 -75450212 - Tigger2 DNA MER2_type -1282 1436 833 370 206 55 62 chr1 206743557 206743703 -75449961 - L1ME4a LINE L1 -229 5892 5748 3894 99 22 67 chr1 206743717 206744362 -75449302 + L1MB3 LINE L1 5566 6181 -2 324 292 32 19 chr1 206744376 206744392 -75449272 - L1MA10 LINE L1 0 6334 6319 2174 207 84 12 chr1 206744392 206745228 -75448436 - L1ME1 LINE L1 -5 6161 5262 344 314 41 16 chr1 206745214 206745408 -75448256 - L1ME4a LINE L1 -385 5736 5538 * 312 220 100 33 chr1 206745414 206745564 -75448100 - L1ME4a LINE L1 -2319 5466 5307 8677 118 28 20 chr1 206746880 206748237 -75445427 - Tigger1 DNA MER2_type 0 2418 1051 235 225 0 0 chr1 206748313 206748353 -75445311 - MLT1K LTR MaLR -23 565 526 389 338 21 14 chr1 206749290 206749432 -75444232 + MIR SINE MIR 18 160 -102 931 156 14 110 chr1 206749918 206750136 -75443528 + MER20 DNA MER1_type 1 197 -22 241 230 65 72 chr1 206750905 206751044 -75442620 - MER112 DNA MER1_type -57 203 66 230 178 0 0 chr1 206751024 206751069 -75442595 - LTR66 LTR ERVL -172 438 394 * 309 270 0 0 chr1 206751075 206751138 -75442526 - MER112 DNA MER1_type -195 65 3 351 226 66 28 chr1 206751236 206751342 -75442322 - MLT1L LTR MaLR -404 211 102 213 39 0 0 chr1 206751681 206751707 -75441957 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1490 186 7 41 chr1 206751707 206752002 -75441662 - AluJo SINE Alu -27 285 1 436 356 30 22 chr1 206752002 206752232 -75441432 + L2 LINE L2 2828 3059 -213 301 293 27 0 chr1 206753122 206753197 -75440467 - MIR3 SINE MIR -11 197 121 1803 203 73 39 chr1 206753541 206754005 -75439659 - MLT1D LTR MaLR 0 505 26 464 301 70 16 chr1 206754198 206754384 -75439280 - MIR SINE MIR -51 211 16 700 115 204 51 chr1 206755031 206755188 -75438476 + MER53 DNA DNA 9 189 0 761 124 144 72 chr1 206756462 206756656 -75437008 - MER44D DNA MER2_type -131 478 1 1281 287 109 32 chr1 206756666 206758036 -75435628 - L1ME LINE L1 -582 5565 4090 23 0 0 0 chr1 206758201 206758224 -75435440 + AT_rich Low_complexity Low_complexity 1 23 0 1011 289 79 33 chr1 206758401 206759535 -75434129 - L1MEd LINE L1 -4818 1492 249 1852 162 0 17 chr1 206759542 206759886 -75433778 + AluSx SINE Alu 1 311 -1 1040 209 14 9 chr1 206761102 206761312 -75432352 + MER20 DNA MER1_type 8 218 -1 346 357 113 51 chr1 206761786 206762220 -75431444 - L2 LINE L2 0 3272 2812 229 339 0 0 chr1 206762207 206762269 -75431395 + L3 LINE CR1 1515 1576 -1 * 286 233 0 78 chr1 206762306 206762396 -75431268 - L2 LINE L2 0 3313 3231 530 351 83 33 chr1 206762472 206763047 -75430617 - L2 LINE L2 -665 2649 2046 423 134 0 0 chr1 206763326 206763408 -75430256 + (GA)n Simple_repeat Simple_repeat 2 83 0 1480 170 12 102 chr1 206763485 206763808 -75429856 - AluJo SINE Alu -18 294 1 1496 205 15 82 chr1 206764188 206764579 -75429085 - MLT1A1 LTR MaLR 0 365 1 346 318 15 15 chr1 206764638 206764770 -75428894 + MIR SINE MIR 81 212 -50 346 321 93 0 chr1 206815188 206815328 -75378336 - MIR SINE MIR -66 196 44 414 301 32 16 chr1 206815345 206815531 -75378133 - MER5A DNA MER1_type 0 189 1 182 264 55 104 chr1 206815616 206815798 -75377866 + MIR3 SINE MIR 1 173 -35 260 246 16 0 chr1 206815983 206816044 -75377620 + MIR SINE MIR 61 122 -140 278 322 0 0 chr1 206816809 206816899 -75376765 + (CA)n Simple_repeat Simple_repeat 1 90 0 257 271 0 29 chr1 206817013 206817083 -75376581 + L2 LINE L2 3245 3312 -1 533 237 145 44 chr1 206819036 206819264 -75374400 - MIR SINE MIR 0 262 12 356 236 178 32 chr1 206819314 206819471 -75374193 - MIR3 SINE MIR -16 192 13 461 333 41 14 chr1 206819828 206819975 -75373689 - L2 LINE L2 0 3272 3122 23 0 0 0 chr1 206820598 206820621 -75373043 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 206821272 206821293 -75372371 + AT_rich Low_complexity Low_complexity 1 21 0 439 320 158 13 chr1 206821699 206821927 -75371737 - MIR SINE MIR 0 262 2 183 171 29 0 chr1 206821933 206821968 -75371696 - L2 LINE L2 -554 2760 2725 22 0 0 0 chr1 206823391 206823413 -75370251 + AT_rich Low_complexity Low_complexity 1 22 0 451 214 0 0 chr1 206824323 206824407 -75369257 - AluJ/FLAM SINE Alu -228 84 1 461 249 226 46 chr1 206827538 206827755 -75365909 - MIR SINE MIR -6 256 1 180 200 0 0 chr1 206832582 206832627 -75361037 + CT-rich Low_complexity Low_complexity 2 46 0 349 263 0 0 chr1 206833086 206833166 -75360498 - MIR SINE MIR -108 154 75 255 322 0 38 chr1 206834106 206834289 -75359375 + (TTGGGG)n Simple_repeat Simple_repeat 2 177 0 219 294 17 40 chr1 206834381 206834558 -75359106 + (TTAGGG)n Simple_repeat Simple_repeat 6 178 0 209 343 0 43 chr1 206835525 206835595 -75358069 - MIR SINE MIR -90 172 106 185 264 75 0 chr1 206840207 206840260 -75353404 - L2 LINE L2 0 3313 3257 213 208 21 0 chr1 206840267 206840315 -75353349 + L2 LINE L2 2368 2416 -898 1883 290 125 36 chr1 206840984 206842321 -75351343 + L2 LINE L2 1797 3313 0 322 363 31 38 chr1 206843076 206843236 -75350428 - MIR SINE MIR -56 206 48 256 283 18 58 chr1 206843606 206843708 -75349956 - MIR SINE MIR -83 125 17 3955 160 57 12 chr1 206844351 206845132 -75348532 + MER21B LTR ERV1 4 854 -9 198 238 0 0 chr1 206845661 206845703 -75347961 - L3 LINE CR1 -634 943 902 448 296 52 23 chr1 206845879 206846051 -75347613 - MIR SINE MIR -61 201 25 218 330 23 23 chr1 206846143 206846231 -75347433 + MIR SINE MIR 175 262 0 231 131 66 33 chr1 206846259 206846320 -75347344 - MIR SINE MIR -13 249 187 180 338 95 0 chr1 206848980 206849054 -75344610 - L3b LINE CR1 -218 1365 1285 211 323 83 10 chr1 206849324 206849420 -75344244 - MIR SINE MIR -5 257 155 280 279 99 56 chr1 206849564 206849797 -75343867 + MIR3 SINE MIR 4 243 -19 504 0 0 0 chr1 206849866 206849922 -75343742 + (TG)n Simple_repeat Simple_repeat 2 57 0 24 0 0 0 chr1 206852220 206852244 -75341420 + AT_rich Low_complexity Low_complexity 1 24 0 1523 255 56 64 chr1 206853862 206854536 -75339128 + MER21B LTR ERV1 88 756 -107 904 262 167 36 chr1 206856507 206857145 -75336519 + L2 LINE L2 2591 3312 -1 622 284 6 12 chr1 206857955 206858124 -75335540 - MIR SINE MIR 0 262 95 1010 307 96 31 chr1 206859003 206859738 -75333926 + L2 LINE L2 1950 2803 -511 649 336 44 35 chr1 206859826 206860192 -75333472 + L2 LINE L2 2926 3294 -19 331 252 26 113 chr1 206860581 206860732 -75332932 + MIR SINE MIR 79 216 -46 453 311 33 14 chr1 206860868 206861080 -75332584 - LTR33 LTR ERVL 0 521 306 280 255 96 0 chr1 206861166 206861260 -75332404 - LTR33 LTR ERVL -398 123 21 305 318 90 53 chr1 206862708 206862897 -75330767 - MIR SINE MIR -23 239 44 197 256 141 83 chr1 206863877 206864033 -75329631 - MIR SINE MIR -14 248 84 258 239 0 60 chr1 206864312 206864379 -75329285 - L2 LINE L2 -1 3312 3250 1080 256 59 26 chr1 206865853 206866274 -75327390 - L1M4 LINE L1 -1062 5084 4650 1778 167 91 0 chr1 206866274 206866603 -75327061 - Tigger2 DNA MER2_type -10 2708 2350 * 8924 125 41 11 chr1 206866586 206867230 -75326434 - Tigger2 DNA MER2_type -1282 1436 812 212 0 36 0 chr1 206867230 206867258 -75326406 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 8924 125 41 11 chr1 206867258 206868008 -75325656 - Tigger2 DNA MER2_type -1906 812 1 2208 259 103 24 chr1 206868008 206868223 -75325441 - L1M4 LINE L1 -1493 4653 4456 2271 103 0 0 chr1 206868223 206868523 -75325141 - AluSg1 SINE Alu -9 300 1 2208 259 103 24 chr1 206868523 206869363 -75324301 - L1M4 LINE L1 -1690 4456 3506 203 0 37 0 chr1 206869367 206869394 -75324270 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2175 116 7 10 chr1 206869468 206869778 -75323886 + AluSc SINE Alu 1 309 0 928 218 90 42 chr1 206869874 206870274 -75323390 - L1M4 LINE L1 -2654 3492 3074 245 132 0 0 chr1 206870281 206870319 -75323345 - L1M4 LINE L1 -3886 2260 2223 214 273 80 57 chr1 206870347 206870435 -75323229 + L2 LINE L2 3181 3270 -2 2234 116 3 3 chr1 206871318 206871620 -75322044 + AluSx SINE Alu 1 302 -10 490 298 8 0 chr1 206871737 206871858 -75321806 + L2 LINE L2 3187 3308 -5 2248 250 77 38 chr1 206872029 206873113 -75320551 - L2 LINE L2 -1 3312 2186 294 250 60 0 chr1 206873910 206873994 -75319670 + MER91C DNA MER1_type 2 90 -50 181 379 23 8 chr1 206874212 206874344 -75319320 - L2 LINE L2 -504 2810 2677 250 310 23 23 chr1 206874764 206874851 -75318813 - MIR SINE MIR -79 183 97 1588 152 67 51 chr1 206875401 206875775 -75317889 - MLT1B LTR MaLR -8 382 3 15077 125 37 21 chr1 206876607 206876934 -75316730 - Tigger1 DNA MER2_type -2 2416 2096 2265 170 50 17 chr1 206876934 206877351 -75316313 - MSTB1 LTR MaLR -1 431 1 15077 125 37 21 chr1 206877351 206879401 -75314263 - Tigger1 DNA MER2_type -322 2096 1 242 281 104 52 chr1 206879439 206879574 -75314090 + MIR3 SINE MIR 21 162 -46 232 245 0 0 chr1 206879727 206879780 -75313884 + MIR3 SINE MIR 156 208 0 347 196 157 0 chr1 206880036 206880138 -75313526 + L1ME4a LINE L1 6002 6119 -2 223 189 0 19 chr1 206880227 206880280 -75313384 - L2 LINE L2 0 3313 3262 180 111 0 0 chr1 206880574 206880601 -75313063 - L2 LINE L2 -562 2752 2726 247 314 23 0 chr1 206881965 206882051 -75311613 - L2 LINE L2 -5 3308 3221 23 54 0 0 chr1 206882580 206882617 -75311047 + AT_rich Low_complexity Low_complexity 1 37 0 346 228 107 30 chr1 206882695 206882892 -75310772 + L1ME LINE L1 5263 5474 -696 283 259 12 12 chr1 206885591 206885672 -75307992 + MIR SINE MIR 23 103 -105 24 32 0 0 chr1 206885805 206885836 -75307828 + AT_rich Low_complexity Low_complexity 1 31 0 189 268 175 52 chr1 206886065 206886162 -75307502 - L2 LINE L2 -14 3258 3150 2065 142 0 0 chr1 206886766 206887062 -75306602 - AluSx SINE Alu -16 296 1 411 272 46 38 chr1 206887077 206887235 -75306429 - MIR SINE MIR -63 145 20 445 297 93 11 chr1 206887370 206887552 -75306112 + MIR SINE MIR 22 218 -44 937 263 86 65 chr1 206888037 206888516 -75305148 + HAL1 LINE L1 227 715 -1792 1211 223 158 30 chr1 206888565 206888685 -75304979 - MLT1D LTR MaLR 0 505 402 2460 112 57 14 chr1 206888685 206889034 -75304630 + THE1B LTR MaLR 1 364 0 1211 223 158 30 chr1 206889034 206889344 -75304320 - MLT1D LTR MaLR -103 402 20 481 279 48 88 chr1 206889368 206889970 -75303694 + HAL1 LINE L1 764 1341 -1166 277 318 31 8 chr1 206889978 206890107 -75303557 + L1P4 LINE L1 5679 5810 -351 2489 49 7 3 chr1 206890179 206890484 -75303180 + AluY SINE Alu 1 306 -5 35 41 0 0 chr1 206890619 206890668 -75302996 + AT_rich Low_complexity Low_complexity 1 49 0 1237 282 71 135 chr1 206890735 206891344 -75302320 + HAL1 LINE L1 1346 1837 -670 7608 134 44 2 chr1 206891344 206892526 -75301138 + Tigger3b DNA MER2_type 1 1231 0 1237 282 71 135 chr1 206892526 206893157 -75300507 + HAL1 LINE L1 1837 2507 0 407 229 105 59 chr1 206893906 206894059 -75299605 + MIR SINE MIR 9 168 -94 227 328 0 16 chr1 206895396 206895457 -75298207 - MIR SINE MIR -124 84 25 253 377 0 0 chr1 206895851 206895928 -75297736 - L2 LINE L2 -8 3264 3188 210 295 80 36 chr1 206896466 206896578 -75297086 - L2 LINE L2 -21 3292 3176 527 332 63 9 chr1 206897255 206897478 -75296186 - MIR SINE MIR -13 249 15 372 279 37 43 chr1 206897824 206897985 -75295679 - MIR3 SINE MIR -29 179 20 654 298 57 20 chr1 206897998 206898246 -75295418 + MIR SINE MIR 4 260 -2 759 289 0 5 chr1 206898761 206898951 -75294713 - MIR SINE MIR -10 252 64 290 279 135 0 chr1 206899649 206899753 -75293911 - MIR SINE MIR -74 188 71 291 167 273 30 chr1 206899931 206899997 -75293667 - L2 LINE L2 -39 3274 3193 318 287 0 20 chr1 206900710 206900734 -75292930 + (CATA)n Simple_repeat Simple_repeat 2 25 -75 219 69 0 0 chr1 206900734 206900763 -75292901 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 287 0 20 chr1 206900763 206900839 -75292825 + (CATA)n Simple_repeat Simple_repeat 25 100 0 1652 122 4 4 chr1 206901082 206901336 -75292328 + L1MA6 LINE L1 6047 6300 0 238 288 0 0 chr1 206901422 206901481 -75292183 + L2 LINE L2 2302 2360 -954 510 211 88 9 chr1 206901864 206901978 -75291686 - L2 LINE L2 -9 3304 3182 421 351 91 11 chr1 206901997 206902273 -75291391 + L1M4 LINE L1 4492 4789 -1357 273 231 13 26 chr1 206902283 206902361 -75291303 + (TA)n Simple_repeat Simple_repeat 1 77 0 227 316 45 32 chr1 206902398 206902553 -75291111 + L1P LINE L1 4902 5058 -1088 4226 168 77 6 chr1 206903420 206904222 -75289442 - L1MD2 LINE L1 0 6359 5501 2034 132 10 3 chr1 206904321 206904609 -75289055 + AluJo SINE Alu 1 290 -22 195 306 204 67 chr1 206904998 206905253 -75288411 + L2 LINE L2 2965 3254 -18 1769 163 29 0 chr1 206906623 206906899 -75286765 - AluJo SINE Alu -28 284 1 403 250 179 13 chr1 206906901 206907057 -75286607 - L2 LINE L2 -14 3299 3118 207 0 0 0 chr1 206907301 206907324 -75286340 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4040 97 28 0 chr1 206907412 206907950 -75285714 + L1PA14 LINE L1 5596 6148 -13 332 287 37 83 chr1 206908544 206908760 -75284904 - LTR16C LTR ERVL -65 426 221 246 176 0 0 chr1 206908766 206908817 -75284847 + (TG)n Simple_repeat Simple_repeat 2 52 0 276 91 91 0 chr1 206909076 206909120 -75284544 - L2 LINE L2 -2 3311 3264 2178 75 0 52 chr1 206909671 206909976 -75283688 + AluY SINE Alu 1 289 -22 25 0 0 0 chr1 206911215 206911240 -75282424 + AT_rich Low_complexity Low_complexity 1 25 0 258 270 108 0 chr1 206912085 206912159 -75281505 + L2 LINE L2 3232 3313 0 690 254 53 5 chr1 206914262 206914451 -75279213 + MIR SINE MIR 50 247 -15 1421 162 83 36 chr1 206915423 206915701 -75277963 + AluJb SINE Alu 20 310 -2 199 335 142 7 chr1 206916771 206916926 -75276738 + L2 LINE L2 2203 2378 -936 195 331 146 0 chr1 206917054 206917184 -75276480 + L2 LINE L2 2595 2743 -571 434 229 139 0 chr1 206917259 206917381 -75276283 + MIR SINE MIR 36 174 -88 181 189 75 0 chr1 206917480 206917533 -75276131 + L2 LINE L2 2828 2884 -429 243 269 290 0 chr1 206917608 206917701 -75275963 - MLT1I LTR MaLR -286 123 4 2749 141 14 9 chr1 206918103 206918529 -75275135 - MSTA LTR MaLR 0 428 1 5418 118 13 2 chr1 206918999 206920336 -75273328 - L1PA15 LINE L1 -3 6162 4861 238 267 40 0 chr1 206921764 206921839 -75271825 - MIR SINE MIR -108 100 23 2491 80 3 3 chr1 206921982 206922293 -75271371 - AluSp SINE Alu -2 311 1 22 0 0 0 chr1 206923462 206923484 -75270180 + AT_rich Low_complexity Low_complexity 1 22 0 2292 158 38 25 chr1 206924229 206924703 -75268961 - L1MA7 LINE L1 0 6291 5812 * 8064 84 6 0 chr1 206924694 206926553 -75267111 - L1PA7 LINE L1 -3 6151 4279 260 238 79 61 chr1 206926681 206926895 -75266769 - L1MEd LINE L1 -4862 1257 1040 354 236 73 8 chr1 206926904 206927027 -75266637 - L1M4 LINE L1 -1625 4521 4391 263 222 56 0 chr1 206927096 206927168 -75266496 + L1M4 LINE L1 3256 3331 -2815 6099 178 28 11 chr1 206927489 206929718 -75263946 + L1PA16 LINE L1 3903 6166 0 4514 255 70 29 chr1 206929715 206930277 -75263387 + L1M4 LINE L1 3418 3956 -2190 * 1715 183 86 21 chr1 206930277 206930649 -75263015 + MSTD LTR MaLR 1 396 0 4514 255 70 29 chr1 206930649 206931588 -75262076 + L1M4 LINE L1 3956 5003 -1143 1939 133 28 0 chr1 206931588 206931873 -75261791 + AluSx SINE Alu 1 293 -19 4514 255 70 29 chr1 206931873 206932126 -75261538 + L1M4 LINE L1 5003 5244 -902 296 300 80 0 chr1 206932123 206932273 -75261391 - L1MEd LINE L1 -5955 164 3 * 209 344 11 0 chr1 206933014 206933107 -75260557 + GA-rich Low_complexity Low_complexity 2 95 0 808 200 121 35 chr1 206933452 206933742 -75259922 - MER5C DNA MER1_type 0 324 10 189 337 58 0 chr1 206934332 206934418 -75259246 - MIR SINE MIR -85 177 87 228 303 0 0 chr1 206934822 206934888 -75258776 + L3b LINE CR1 1323 1388 -195 377 314 99 0 chr1 206935091 206935282 -75258382 - L2 LINE L2 0 3313 3104 949 257 139 62 chr1 206935367 206935963 -75257701 - L2 LINE L2 -480 2834 2193 321 210 249 28 chr1 206936065 206936246 -75257418 - L2 LINE L2 -1087 2227 2007 248 218 11 115 chr1 206936496 206936583 -75257081 - L2 LINE L2 -40 3232 3155 1462 271 62 29 chr1 206938170 206939014 -75254650 + L2 LINE L2 2343 3222 -91 529 236 16 0 chr1 206939014 206939141 -75254523 - FLAM_A SINE Alu -1 132 4 1462 271 62 29 chr1 206939141 206939232 -75254432 + L2 LINE L2 3222 3309 -4 635 224 112 12 chr1 206939340 206939510 -75254154 - MIR SINE MIR -71 191 5 236 286 31 20 chr1 206939806 206939904 -75253760 + MIR3 SINE MIR 95 193 -15 211 322 0 0 chr1 206940229 206940320 -75253344 + MIR SINE MIR 63 153 -55 270 116 0 0 chr1 206943011 206943054 -75250610 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 471 344 112 25 chr1 206943141 206943507 -75250157 - L2 LINE L2 -1 3271 2874 2095 132 29 42 chr1 206944166 206944546 -75249118 + THE1C LTR MaLR 1 375 0 2302 95 0 3 chr1 206944653 206944948 -75248716 - AluY SINE Alu -17 294 1 182 340 30 20 chr1 206945516 206945616 -75248048 - L3 LINE CR1 -3 1574 1474 2556 78 0 0 chr1 206947264 206947572 -75246092 - AluSg SINE Alu -2 308 1 392 305 104 0 chr1 206947652 206947816 -75245848 + MIR3 SINE MIR 5 185 -23 23 0 0 0 chr1 206948512 206948535 -75245129 + AT_rich Low_complexity Low_complexity 1 23 0 322 292 23 8 chr1 206950073 206950203 -75243461 + MIR3 SINE MIR 49 180 -28 1009 236 80 73 chr1 206950421 206950820 -75242844 - LTR16A1 LTR ERVL 0 457 56 404 271 44 112 chr1 206951392 206951643 -75242021 + L2 LINE L2 3034 3267 -5 540 254 155 21 chr1 206952003 206952196 -75241468 + MER20 DNA MER1_type 1 219 0 202 273 45 30 chr1 206954031 206954097 -75239567 - L2 LINE L2 -35 3278 3212 4002 107 5 12 chr1 206955229 206955811 -75237853 + L1PA13 LINE L1 5577 6154 -9 286 293 13 0 chr1 206957331 206957406 -75236258 - L2 LINE L2 -5 3267 3192 3991 247 114 44 chr1 206959367 206961566 -75232098 - L2 LINE L2 0 3313 942 2424 52 3 0 chr1 206961588 206961877 -75231787 + AluY SINE Alu 1 290 -21 596 221 70 23 chr1 206963029 206963201 -75230463 + MER5A DNA MER1_type 10 189 0 940 176 41 0 chr1 206963557 206963727 -75229937 + FAM SINE Alu 1 41 -8 180 0 0 0 chr1 206964401 206964421 -75229243 + (TA)n Simple_repeat Simple_repeat 2 21 0 226 167 0 0 chr1 206964896 206964932 -75228732 - HsTC2 DNA Tc2 0 1898 1863 30 45 0 0 chr1 206965533 206965577 -75228087 + AT_rich Low_complexity Low_complexity 1 44 0 606 280 52 5 chr1 206965685 206965878 -75227786 + MIR SINE MIR 56 257 -5 182 182 0 23 chr1 206966046 206966090 -75227574 + L2 LINE L2 3017 3059 -213 202 259 28 74 chr1 206967024 206967132 -75226532 + MIR SINE MIR 114 216 -46 2340 96 0 0 chr1 206967528 206967821 -75225843 - AluSg SINE Alu -17 293 1 29 0 0 0 chr1 206968158 206968187 -75225477 + AT_rich Low_complexity Low_complexity 1 29 0 1893 131 4 0 chr1 206968423 206968682 -75224982 - AluSq SINE Alu -53 260 1 278 299 104 35 chr1 206968707 206968851 -75224813 + MIR SINE MIR 59 212 -50 363 44 0 0 chr1 206970537 206970582 -75223082 + (TG)n Simple_repeat Simple_repeat 2 46 0 244 274 83 60 chr1 206971509 206971618 -75222046 - MIR SINE MIR -7 255 150 2459 114 8 22 chr1 206971618 206971987 -75221677 - THE1B LTR MaLR 0 364 1 244 274 83 60 chr1 206971987 206972075 -75221589 - MIR SINE MIR -112 150 40 1703 128 22 38 chr1 206972919 206973232 -75220432 - L1PA11 LINE L1 0 6174 5867 261 292 181 7 chr1 206973500 206973644 -75220020 - MIR SINE MIR -48 214 46 205 336 74 0 chr1 206974426 206974548 -75219116 + L2 LINE L2 3136 3266 -6 205 292 77 0 chr1 206975486 206975551 -75218113 - MIR SINE MIR -141 121 52 5428 75 16 8 chr1 206977014 206977720 -75215944 + L1PA10 LINE L1 5443 6153 -15 336 287 63 28 chr1 206977922 206978065 -75215599 - L2 LINE L2 0 3272 3125 2381 101 0 0 chr1 206978172 206978468 -75215196 + AluSg SINE Alu 1 296 -14 202 329 24 12 chr1 206979642 206979724 -75213940 - L3 LINE CR1 -2 1575 1493 268 330 42 25 chr1 206980312 206980430 -75213234 - MIR SINE MIR -58 150 31 1833 143 3 49 chr1 206981698 206982006 -75211658 + AluJb SINE Alu 1 294 -18 565 200 29 14 chr1 206982077 206982217 -75211447 - L1ME LINE L1 -378 5743 5602 559 220 8 17 chr1 206982947 206983065 -75210599 + FLAM_A SINE Alu 1 117 -16 295 254 0 90 chr1 206984661 206984783 -75208881 + MER5B DNA MER1_type 68 178 0 211 293 66 31 chr1 206984807 206984959 -75208705 - MER5A DNA MER1_type -14 175 7 229 247 146 11 chr1 206984977 206985066 -75208598 + L3 LINE CR1 1475 1575 -2 334 300 18 0 chr1 206986090 206986200 -75207464 - L2 LINE L2 -1 3312 3201 231 271 0 29 chr1 207088327 207088397 -75105267 - L2 LINE L2 -1 3312 3245 278 322 0 0 chr1 207088511 207088601 -75105063 + (TG)n Simple_repeat Simple_repeat 1 90 0 232 246 16 0 chr1 207089366 207089427 -75104237 - MIR SINE MIR -140 122 61 373 301 32 16 chr1 207089879 207090065 -75103599 + MER5A DNA MER1_type 1 189 0 285 321 93 0 chr1 207090082 207090222 -75103442 + MIR SINE MIR 44 196 -66 191 140 40 20 chr1 207091530 207091580 -75102084 + MIR3 SINE MIR 150 200 -8 182 195 0 24 chr1 207092198 207092239 -75101425 - L2 LINE L2 -10 3262 3223 380 285 54 15 chr1 207092290 207092420 -75101244 - MIR SINE MIR -71 191 57 231 300 111 0 chr1 207094106 207094196 -75099468 + L2 LINE L2 3164 3263 -9 351 44 0 0 chr1 207096052 207096097 -75097567 + (TG)n Simple_repeat Simple_repeat 1 45 0 180 343 27 0 chr1 207097111 207097184 -75096480 - MIR SINE MIR -106 156 82 447 296 111 6 chr1 207097280 207097452 -75096212 - MIR SINE MIR -45 217 28 214 320 0 0 chr1 207097465 207097540 -75096124 + (CTATA)n Simple_repeat Simple_repeat 1 75 0 251 190 69 0 chr1 207097801 207097859 -75095805 + MIR SINE MIR 108 169 -93 219 311 29 10 chr1 207098036 207098139 -75095525 + MIR SINE MIR 154 258 -4 269 294 63 40 chr1 207098234 207098360 -75095304 - HAL1 LINE L1 -1524 983 855 429 261 14 50 chr1 207098786 207098926 -75094738 + L1MA10 LINE L1 6178 6330 -4 22 70 0 0 chr1 207098929 207098972 -75094692 + AT_rich Low_complexity Low_complexity 1 43 0 263 319 21 28 chr1 207099691 207099832 -75093832 + L3 LINE CR1 1219 1358 -219 28 29 0 0 chr1 207101079 207101114 -75092550 + AT_rich Low_complexity Low_complexity 1 35 0 280 338 40 20 chr1 207104397 207104548 -75089116 + L3 LINE CR1 1421 1574 -3 930 145 17 0 chr1 207104611 207104783 -75088881 - L1MA4 LINE L1 -5 6295 6121 245 208 19 0 chr1 207104964 207105017 -75088647 + GA-rich Low_complexity Low_complexity 2 55 0 204 276 73 65 chr1 207105091 207105214 -75088450 - MIR SINE MIR -138 124 1 471 307 18 12 chr1 207105729 207105895 -75087769 + MIR3 SINE MIR 36 202 -6 882 146 0 0 chr1 207106111 207106241 -75087423 - FLAM_C SINE Alu -2 131 2 632 144 0 0 chr1 207108232 207108322 -75085342 + 5S rRNA rRNA 1 90 -31 209 258 0 45 chr1 207110669 207110735 -75082929 - L2 LINE L2 -7 3265 3203 741 259 36 32 chr1 207111060 207111338 -75082326 - MLT1J LTR MaLR -7 504 226 326 276 115 43 chr1 207111516 207111795 -75081869 - MLT1L LTR MaLR -2 613 315 235 250 0 18 chr1 207111844 207111900 -75081764 - MLT1K LTR MaLR -380 208 154 1380 224 50 3 chr1 207112230 207112529 -75081135 + MER58B DNA MER1_type 1 313 -28 1041 203 11 0 chr1 207113516 207113703 -75079961 + MER58A DNA MER1_type 1 189 -35 344 248 59 10 chr1 207114289 207114390 -75079274 + MIR SINE MIR 79 184 -78 261 0 0 0 chr1 207116486 207116515 -75077149 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 88 29 0 chr1 207120019 207120053 -75073611 + (CAA)n Simple_repeat Simple_repeat 2 36 0 200 238 0 0 chr1 207120556 207120598 -75073066 + L2 LINE L2 3262 3303 -10 189 276 138 41 chr1 207121627 207121750 -75071914 + L2 LINE L2 3177 3311 -2 317 274 70 65 chr1 207122828 207123014 -75070650 - MIR SINE MIR -70 192 6 2272 65 32 0 chr1 207123656 207123935 -75069729 - AluY SINE Alu -8 303 16 249 268 12 12 chr1 207124082 207124164 -75069500 - L2 LINE L2 0 3313 3232 323 349 94 23 chr1 207124339 207124777 -75068887 - L2 LINE L2 -386 2928 2460 181 239 14 99 chr1 207124875 207124946 -75068718 - L2 LINE L2 -41 3272 3208 400 323 65 3 chr1 207125056 207125263 -75068401 - L2 LINE L2 -287 2985 2770 1491 188 35 11 chr1 207125412 207125694 -75067970 - AluJo SINE Alu -17 295 7 22 0 0 0 chr1 207126830 207126852 -75066812 + AT_rich Low_complexity Low_complexity 1 22 0 2354 87 0 7 chr1 207127729 207128028 -75065636 + AluY SINE Alu 1 297 -14 529 206 109 11 chr1 207129489 207129664 -75064000 + Charlie5 DNA MER1_type 2387 2578 -34 2412 85 0 0 chr1 207131988 207132282 -75061382 - AluY SINE Alu -17 294 1 558 0 0 0 chr1 207132310 207132372 -75061292 + (TA)n Simple_repeat Simple_repeat 2 63 0 324 362 31 8 chr1 207132375 207132502 -75061162 - MIR3 SINE MIR -49 159 30 271 108 0 0 chr1 207132844 207132881 -75060783 - MLT1A2 LTR MaLR -12 353 317 673 204 263 55 chr1 207133008 207133297 -75060367 - MLT1A2 LTR MaLR -12 362 14 372 227 195 19 chr1 207134691 207134845 -75058819 + MER5A DNA MER1_type 2 182 -7 1362 196 86 78 chr1 207137954 207138336 -75055328 + MLT1B LTR MaLR 1 385 -5 195 162 0 0 chr1 207138633 207138670 -75054994 + (TA)n Simple_repeat Simple_repeat 1 37 0 12140 34 3 0 chr1 207138867 207141080 -75052584 - L1PA3 LINE L1 0 6155 3953 2727 30 0 9 chr1 207141080 207141414 -75052250 + L1PA3 LINE L1 3606 3936 -2210 2513 177 31 5 chr1 207141611 207142057 -75051607 - L1PBa LINE L1 -6405 458 1 602 91 45 0 chr1 207142068 207142178 -75051486 - L1M LINE L1 -937 5368 5254 4980 176 52 7 chr1 207142179 207143228 -75050436 - L1 LINE L1 -1977 4169 3074 8558 115 56 70 chr1 207143260 207146005 -75047659 - pTR5 LTR ERV1 0 8399 504 6796 73 3 13 chr1 207146018 207147577 -75046087 - HERV9 LTR ERV1 -1094 7305 5677 1895 249 7 31 chr1 207147577 207148253 -75045411 - L1 LINE L1 -2631 3751 3092 11017 162 58 58 chr1 207148255 207150993 -75042671 - L1 LINE L1 -3647 2735 5 4636 249 106 48 chr1 207150976 207153291 -75040373 - L1MEc LINE L1 -2291 3924 1745 * 1330 227 91 73 chr1 207153291 207153785 -75039879 - MLT1D LTR MaLR -2 503 1 4636 249 106 48 chr1 207153785 207154893 -75038771 - L1MEc LINE L1 -4470 1745 287 216 0 0 0 chr1 207154893 207154917 -75038747 + (TCTCC)n Simple_repeat Simple_repeat 4 27 0 4636 249 106 48 chr1 207154917 207155187 -75038477 - L1MEc LINE L1 -5928 287 34 214 224 0 0 chr1 207155700 207155749 -75037915 - L2 LINE L2 0 3313 3265 2573 89 0 3 chr1 207156004 207156352 -75037312 - L1PB1 LINE L1 -5 6146 5800 1227 227 66 50 chr1 207157072 207157693 -75035971 + L1M4 LINE L1 3587 4997 -1149 1725 238 25 41 chr1 207157762 207158275 -75035389 + MLT1D LTR MaLR 1 505 0 818 269 64 76 chr1 207158936 207159248 -75034416 - MLT1J LTR MaLR -31 480 175 4882 90 6 16 chr1 207159248 207159915 -75033749 - PABL_A LTR ERV1 0 660 1 818 269 64 76 chr1 207159915 207160086 -75033578 - MLT1J LTR MaLR -336 175 3 235 264 77 44 chr1 207160116 207160207 -75033457 - L2 LINE L2 -33 3280 3187 189 323 89 16 chr1 207160347 207160471 -75033193 - L2 LINE L2 -260 3012 2880 203 276 52 17 chr1 207160514 207160572 -75033092 - L2 LINE L2 -5 3308 3249 305 287 57 51 chr1 207160585 207160742 -75032922 + MIR3 SINE MIR 41 198 -10 482 311 160 0 chr1 207160902 207161114 -75032550 - MIR SINE MIR -15 247 2 601 197 36 7 chr1 207161345 207161482 -75032182 + L1MB8 LINE L1 6035 6175 -3 852 184 43 6 chr1 207161604 207161767 -75031897 - MLT1A1 LTR MaLR 0 365 197 252 0 0 0 chr1 207161767 207161795 -75031869 + (T)n Simple_repeat Simple_repeat 1 28 0 263 89 44 0 chr1 207161800 207161845 -75031819 - L1MB7 LINE L1 0 6184 6138 3283 31 5 0 chr1 207161861 207162245 -75031419 - L1PA4 LINE L1 0 6155 5770 1317 211 65 56 chr1 207162314 207162670 -75030994 + MLT1A1 LTR MaLR 6 364 -1 806 166 7 7 chr1 207162670 207162809 -75030855 - MLT1A1 LTR MaLR -226 139 1 496 274 173 28 chr1 207163097 207163352 -75030312 + L3 LINE CR1 1068 1359 -218 508 280 17 40 chr1 207164111 207164286 -75029378 + MER5A DNA MER1_type 19 189 0 385 290 28 9 chr1 207164419 207164526 -75029138 + MER81 DNA DNA 2 110 -4 201 147 0 0 chr1 207165066 207165100 -75028564 + (TTC)n Simple_repeat Simple_repeat 3 36 0 513 357 70 48 chr1 207166600 207166914 -75026750 + L2 LINE L2 2951 3271 -1 382 303 61 53 chr1 207166918 207166997 -75026667 - MIR SINE MIR 0 262 185 240 35 0 0 chr1 207166997 207167026 -75026638 + (TG)n Simple_repeat Simple_repeat 2 30 0 382 303 61 53 chr1 207167026 207167174 -75026490 - MIR SINE MIR -77 185 36 521 378 25 0 chr1 207168657 207168898 -75024766 - MIR SINE MIR -8 254 8 675 266 0 7 chr1 207170098 207170241 -75023423 - FLAM_A SINE Alu 0 142 1 605 359 20 12 chr1 207176660 207176905 -75016759 - MIR SINE MIR -13 249 3 1693 191 96 117 chr1 207177795 207178207 -75015457 + L1MD3 LINE L1 7331 7729 -266 2596 123 11 26 chr1 207178207 207178588 -75015076 + THE1C LTR MaLR 1 375 0 1693 191 96 117 chr1 207178588 207178766 -75014898 + L1MD3 LINE L1 7729 7909 -86 665 218 60 63 chr1 207178766 207179050 -75014614 + Charlie7 DNA MER1_type 1814 2096 -516 623 110 33 0 chr1 207179161 207179252 -75014412 - L1P LINE L1 -1827 4319 4226 2440 125 19 30 chr1 207179253 207179621 -75014043 - THE1B LTR MaLR 0 364 1 2674 79 42 3 chr1 207179626 207179979 -75013685 - THE1B-int LTR MaLR -7 1573 1207 614 91 45 0 chr1 207179994 207180104 -75013560 + L1M LINE L1 5254 5368 -937 8834 146 146 8 chr1 207180115 207181724 -75011940 + L1MA6 LINE L1 1 1832 -5031 5755 154 20 34 chr1 207181707 207182364 -75011300 + L1MA6 LINE L1 5422 6086 -930 * 1904 148 3 13 chr1 207182364 207182662 -75011002 + AluSx SINE Alu 1 295 -17 5755 154 20 34 chr1 207182662 207183593 -75010071 + L1MA6 LINE L1 6086 7010 -6 4797 182 36 19 chr1 207183599 207184466 -75009198 + L1MB3 LINE L1 4457 5307 -876 804 145 0 179 chr1 207184466 207184701 -75008963 - 7SK RNA RNA 0 193 1 4797 182 36 19 chr1 207184701 207185511 -75008153 + L1MB3 LINE L1 5307 6180 -3 1349 260 139 23 chr1 207285571 207286180 -74907484 - L2 LINE L2 -198 3115 2424 338 130 0 116 chr1 207286317 207286386 -74907278 + L2 LINE L2 3207 3267 -5 1097 272 58 51 chr1 207286748 207287196 -74906468 + L2 LINE L2 2118 2568 -746 2093 93 0 49 chr1 207287593 207287917 -74905747 + AluY SINE Alu 1 308 -3 25 0 0 0 chr1 207289141 207289166 -74904498 + AT_rich Low_complexity Low_complexity 1 25 0 271 255 96 0 chr1 207291431 207291525 -74902139 + LTR33 LTR ERVL 21 123 -398 469 311 33 14 chr1 207291611 207291823 -74901841 + LTR33 LTR ERVL 306 521 0 327 252 26 113 chr1 207291959 207292110 -74901554 - MIR SINE MIR -46 216 79 510 274 76 38 chr1 207292499 207292736 -74900928 - L2 LINE L2 -19 3294 3049 2257 98 0 33 chr1 207292838 207293175 -74900489 + L1PA11 LINE L1 5849 6174 0 320 294 139 43 chr1 207294030 207294107 -74899557 + MIR SINE MIR 51 119 -143 2463 114 8 22 chr1 207294107 207294476 -74899188 + THE1B LTR MaLR 1 364 0 320 294 139 43 chr1 207294476 207294585 -74899079 + MIR SINE MIR 119 255 -7 3826 97 28 0 chr1 207295224 207295762 -74897902 + L1PA14 LINE L1 5596 6148 -13 344 287 37 83 chr1 207296356 207296572 -74897092 - LTR16C LTR ERVL -65 426 221 246 176 0 0 chr1 207296578 207296629 -74897035 + (TG)n Simple_repeat Simple_repeat 2 52 0 283 91 91 0 chr1 207296888 207296932 -74896732 - L2 LINE L2 -2 3311 3264 2221 74 0 49 chr1 207297483 207297807 -74895857 + AluY SINE Alu 1 308 -3 2150 250 23 43 chr1 207298248 207298899 -74894765 - L2 LINE L2 -491 2823 2186 298 250 60 0 chr1 207299696 207299780 -74893884 - MER91C DNA MER1_type -1 139 51 189 379 23 8 chr1 207299998 207300130 -74893534 - L2 LINE L2 -504 2810 2677 258 346 50 19 chr1 207300478 207300637 -74893027 - MIR SINE MIR -2 260 97 1698 154 68 38 chr1 207301187 207301556 -74892108 - MLT1B LTR MaLR -8 382 3 2093 120 55 3 chr1 207302388 207302714 -74890950 - Tigger1 DNA MER2_type -2 2416 2074 1642 178 59 24 chr1 207302715 207303053 -74890611 - MSTB1 LTR MaLR -1 431 82 480 271 44 112 chr1 207303401 207303652 -74890012 - L2 LINE L2 -5 3267 3034 1027 236 80 73 chr1 207304224 207304623 -74889041 + LTR16A1 LTR ERVL 56 457 0 372 292 23 8 chr1 207304841 207304971 -74888693 - MIR3 SINE MIR -28 180 49 23 0 0 0 chr1 207306273 207306296 -74887368 + AT_rich Low_complexity Low_complexity 1 23 0 305 303 92 0 chr1 207306992 207307111 -74886553 - MIR3 SINE MIR -23 185 56 636 325 49 41 chr1 207307287 207307653 -74886011 - L2 LINE L2 -19 3294 2926 931 298 189 27 chr1 207307741 207308489 -74885175 - L2 LINE L2 -511 2803 1935 651 233 14 14 chr1 207311118 207311264 -74882400 + MIR SINE MIR 117 262 0 193 318 0 48 chr1 207311868 207311931 -74881733 - L2 LINE L2 -10 3303 3244 * 715 250 123 9 chr1 207311926 207312154 -74881510 + MIR SINE MIR 9 262 0 558 124 0 0 chr1 207313121 207313210 -74880454 + (TCCC)n Simple_repeat Simple_repeat 4 92 0 577 344 112 25 chr1 207313301 207313667 -74879997 - L2 LINE L2 -1 3271 2874 2098 132 29 42 chr1 207314326 207314706 -74878958 + THE1C LTR MaLR 1 375 0 2205 88 0 3 chr1 207314813 207315108 -74878556 - AluY SINE Alu -17 294 1 222 340 30 20 chr1 207315676 207315776 -74877888 - L3 LINE CR1 -3 1574 1474 2413 78 0 0 chr1 207317425 207317732 -74875932 - AluSg SINE Alu -3 307 1 288 273 17 12 chr1 207318777 207318873 -74874791 + MIR SINE MIR 4 103 -105 24 32 0 0 chr1 207319006 207319037 -74874627 + AT_rich Low_complexity Low_complexity 1 31 0 192 268 175 52 chr1 207319266 207319363 -74874301 - L2 LINE L2 -14 3258 3150 2065 142 0 0 chr1 207319967 207320263 -74873401 - AluSx SINE Alu -16 296 1 411 272 46 38 chr1 207320278 207320436 -74873228 - MIR SINE MIR -63 145 20 445 297 93 11 chr1 207320571 207320753 -74872911 + MIR SINE MIR 22 218 -44 203 298 0 57 chr1 207321839 207321963 -74871701 + CT-rich Low_complexity Low_complexity 4 120 0 797 218 67 0 chr1 207322032 207322197 -74871467 - MER5A DNA MER1_type -13 176 1 181 146 0 98 chr1 207322280 207322321 -74871343 - L2 LINE L2 0 3313 3277 403 250 179 13 chr1 207322631 207322787 -74870877 + L2 LINE L2 3118 3299 -14 1769 163 29 0 chr1 207322789 207323065 -74870599 + AluJo SINE Alu 1 284 -28 195 306 204 67 chr1 207324435 207324690 -74868974 - L2 LINE L2 -18 3254 2965 2034 132 10 3 chr1 207325079 207325367 -74868297 - AluJo SINE Alu -22 290 1 4414 164 76 8 chr1 207325466 207326270 -74867394 + L1MD2 LINE L1 5501 6359 0 227 316 45 32 chr1 207327137 207327292 -74866372 - L1P LINE L1 -1088 5058 4902 273 231 13 26 chr1 207327329 207327407 -74866257 + (TA)n Simple_repeat Simple_repeat 2 78 0 312 319 42 21 chr1 207327417 207327561 -74866103 - L1M4 LINE L1 -1357 4789 4643 510 211 88 9 chr1 207327712 207327826 -74865838 + L2 LINE L2 3182 3304 -9 238 288 0 0 chr1 207328209 207328268 -74865396 - L2 LINE L2 -954 2360 2302 346 228 107 30 chr1 207329631 207329828 -74863836 - L1ME LINE L1 -696 5474 5263 23 54 0 0 chr1 207329906 207329943 -74863721 + AT_rich Low_complexity Low_complexity 1 37 0 247 314 23 0 chr1 207330472 207330558 -74863106 + L2 LINE L2 3221 3308 -5 180 111 0 0 chr1 207331922 207331949 -74861715 + L2 LINE L2 2726 2752 -562 223 189 0 19 chr1 207332244 207332297 -74861367 + L2 LINE L2 3262 3313 0 347 196 157 0 chr1 207332386 207332488 -74861176 - L1ME4a LINE L1 -2 6119 6002 232 245 0 0 chr1 207332744 207332797 -74860867 - MIR3 SINE MIR 0 208 156 242 281 104 52 chr1 207332950 207333085 -74860579 - MIR3 SINE MIR -46 162 21 12195 125 35 24 chr1 207333123 207335048 -74858616 + Tigger1 DNA MER2_type 1 1945 -473 1295 129 5 0 chr1 207335148 207335350 -74858314 - L1MA6 LINE L1 -51 6249 6047 318 287 0 20 chr1 207335593 207335669 -74857995 + (TATG)n Simple_repeat Simple_repeat 2 77 -23 219 69 0 0 chr1 207335669 207335698 -74857966 + (TG)n Simple_repeat Simple_repeat 2 30 0 318 287 0 20 chr1 207335698 207335722 -74857942 + (TATG)n Simple_repeat Simple_repeat 77 100 0 291 167 273 30 chr1 207336435 207336501 -74857163 + L2 LINE L2 3193 3274 -39 290 279 135 0 chr1 207336679 207336783 -74856881 + MIR SINE MIR 71 188 -74 759 289 0 5 chr1 207337483 207337673 -74855991 + MIR SINE MIR 64 252 -10 654 298 57 20 chr1 207338188 207338436 -74855228 - MIR SINE MIR -2 260 4 372 279 37 43 chr1 207338449 207338610 -74855054 + MIR3 SINE MIR 20 179 -29 527 332 63 9 chr1 207338956 207339179 -74854485 + MIR SINE MIR 15 249 -13 210 295 80 36 chr1 207339856 207339968 -74853696 + L2 LINE L2 3176 3292 -21 253 377 0 0 chr1 207340506 207340583 -74853081 + L2 LINE L2 3188 3264 -8 227 328 0 16 chr1 207340977 207341038 -74852626 + MIR SINE MIR 25 84 -124 407 229 105 59 chr1 207342375 207342528 -74851136 - MIR SINE MIR -94 168 9 1006 236 60 75 chr1 207343277 207343747 -74849917 - HAL1 LINE L1 0 2507 2045 1450 152 0 0 chr1 207343805 207344016 -74849648 - Tigger3(Golem) DNA MER2_type 0 3038 2828 257 233 116 0 chr1 207344895 207344981 -74848683 - MIR SINE MIR -90 118 23 2474 80 3 3 chr1 207345124 207345435 -74848229 - AluSp SINE Alu -2 311 1 22 0 0 0 chr1 207346604 207346626 -74847038 + AT_rich Low_complexity Low_complexity 1 22 0 2426 158 38 25 chr1 207347371 207347845 -74845819 - L1MA7 LINE L1 0 6291 5812 * 8436 84 6 0 chr1 207347836 207349695 -74843969 - L1PA7 LINE L1 -3 6151 4279 276 238 79 61 chr1 207349823 207350037 -74843627 - L1MEd LINE L1 -4862 1257 1040 367 236 73 8 chr1 207350046 207350169 -74843495 - L1M4 LINE L1 -1625 4521 4391 447 254 66 20 chr1 207350238 207350435 -74843229 + L1M4 LINE L1 3256 3461 -2685 * 6589 192 25 13 chr1 207350410 207352140 -74841524 + L1P4 LINE L1 3883 5629 -537 258 270 108 0 chr1 207352262 207352336 -74841328 + L2 LINE L2 3232 3313 0 747 254 53 5 chr1 207354439 207354628 -74839036 + MIR SINE MIR 50 247 -15 221 344 128 18 chr1 207354931 207355158 -74838506 - MIR SINE MIR -9 253 2 1421 162 83 36 chr1 207355600 207355878 -74837786 + AluJb SINE Alu 20 310 -2 235 335 142 7 chr1 207356948 207357103 -74836561 + L2 LINE L2 2203 2378 -936 228 369 119 0 chr1 207357231 207357391 -74836273 + L2 LINE L2 2595 2773 -541 476 229 139 0 chr1 207357436 207357558 -74836106 + MIR SINE MIR 36 174 -88 196 189 75 0 chr1 207357657 207357710 -74835954 + L2 LINE L2 2828 2884 -429 239 269 290 0 chr1 207357785 207357878 -74835786 - MLT1I LTR MaLR -286 123 4 186 294 103 48 chr1 207358087 207358233 -74835431 - MIR3 SINE MIR -25 183 30 2901 141 14 9 chr1 207358280 207358706 -74834958 - MSTA LTR MaLR 0 428 1 193 277 101 97 chr1 207358725 207358992 -74834672 + L2 LINE L2 2997 3264 -8 5716 118 15 4 chr1 207359176 207360513 -74833151 - L1PA15 LINE L1 -3 6162 4861 704 223 38 38 chr1 207361069 207361253 -74832411 + L2 LINE L2 3129 3312 -1 490 298 8 0 chr1 207361424 207361545 -74832119 - L2 LINE L2 -5 3308 3187 2234 116 3 3 chr1 207361662 207361964 -74831700 - AluSx SINE Alu -10 302 1 214 273 80 57 chr1 207362847 207362935 -74830729 - L2 LINE L2 -2 3270 3181 245 132 0 0 chr1 207362963 207363001 -74830663 + L1M4 LINE L1 2223 2260 -3886 928 218 90 42 chr1 207363008 207363408 -74830256 + L1M4 LINE L1 3074 3492 -2654 2175 116 7 10 chr1 207363504 207363814 -74829850 - AluSc SINE Alu 0 309 1 203 0 37 0 chr1 207363888 207363915 -74829749 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 283 317 88 24 chr1 207363919 207364124 -74829540 + L1M4 LINE L1 3509 3726 -2420 2208 244 100 24 chr1 207364138 207364759 -74828905 + L1M4 LINE L1 3753 4456 -1690 2271 103 0 0 chr1 207364759 207365059 -74828605 + AluSg1 SINE Alu 1 300 -9 2208 244 100 24 chr1 207365059 207365274 -74828390 + L1M4 LINE L1 4456 4653 -1493 8924 125 41 11 chr1 207365274 207366024 -74827640 + Tigger2 DNA MER2_type 1 812 -1906 212 0 36 0 chr1 207366024 207366052 -74827612 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 8924 125 41 11 chr1 207366052 207366696 -74826968 + Tigger2 DNA MER2_type 812 1436 -1282 1778 167 91 0 chr1 207366679 207367008 -74826656 + Tigger2 DNA MER2_type 2350 2708 -10 * 1080 256 59 26 chr1 207367008 207367429 -74826235 + L1M4 LINE L1 4650 5084 -1062 258 239 0 60 chr1 207368903 207368970 -74824694 + L2 LINE L2 3250 3312 -1 197 256 141 83 chr1 207369249 207369405 -74824259 + MIR SINE MIR 84 248 -14 325 272 159 67 chr1 207370386 207370581 -74823083 + MIR SINE MIR 44 256 -6 940 285 110 39 chr1 207370797 207371289 -74822375 - HAL1 LINE L1 -635 1872 1346 35 41 0 0 chr1 207371356 207371405 -74822259 + AT_rich Low_complexity Low_complexity 1 49 0 2388 49 7 3 chr1 207371540 207371845 -74821819 - AluY SINE Alu -5 306 1 273 318 31 8 chr1 207371917 207372046 -74821618 - L1P4 LINE L1 -351 5810 5679 394 279 48 88 chr1 207372054 207372656 -74821008 - HAL1 LINE L1 -1166 1341 764 1166 237 151 31 chr1 207372661 207372990 -74820674 + MLT1D LTR MaLR 1 400 -105 2342 112 57 14 chr1 207372990 207373339 -74820325 - THE1B LTR MaLR 0 364 1 1166 237 151 31 chr1 207373339 207373460 -74820204 + MLT1D LTR MaLR 400 505 0 1247 253 121 65 chr1 207373509 207374185 -74819479 - HAL1 LINE L1 -1792 715 2 191 310 88 26 chr1 207374721 207374834 -74818830 + L2 LINE L2 3189 3308 -5 316 293 13 0 chr1 207374938 207375013 -74818651 + L2 LINE L2 3192 3267 -5 202 309 62 21 chr1 207375408 207375505 -74818159 - MIR SINE MIR -80 182 82 3988 107 5 12 chr1 207376533 207377115 -74816549 - L1PA13 LINE L1 -9 6154 5577 198 173 0 115 chr1 207377832 207377884 -74815780 + L3 LINE CR1 1468 1513 -64 228 342 51 0 chr1 207378247 207378326 -74815338 + L2 LINE L2 3212 3294 -19 571 249 155 21 chr1 207380148 207380341 -74813323 - MER20 DNA MER1_type 0 219 1 237 340 0 32 chr1 207380717 207380902 -74812762 + (TTGGGG)n Simple_repeat Simple_repeat 1 179 0 220 287 22 39 chr1 207380855 207381036 -74812628 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 * 597 228 8 16 chr1 207381163 207381290 -74812374 - MIR3 SINE MIR -5 203 78 209 343 0 43 chr1 207382259 207382329 -74811335 - MIR SINE MIR -90 172 106 317 327 18 68 chr1 207385780 207385964 -74807700 - MIR SINE MIR -56 152 18 184 264 75 0 chr1 207387101 207387154 -74806510 - L2 LINE L2 0 3313 3257 212 208 21 0 chr1 207387161 207387209 -74806455 + L2 LINE L2 2368 2416 -898 1846 284 127 38 chr1 207387878 207389215 -74804449 + L2 LINE L2 1797 3313 0 320 363 31 38 chr1 207389970 207390130 -74803534 - MIR SINE MIR -56 206 48 256 283 18 58 chr1 207390500 207390602 -74803062 - MIR SINE MIR -83 125 17 2460 112 51 3 chr1 207390915 207391290 -74802374 + L1PA16 LINE L1 5774 6166 0 4385 255 70 29 chr1 207391291 207391849 -74801815 + L1M4 LINE L1 3422 3956 -2190 1710 183 86 21 chr1 207391849 207392221 -74801443 + MSTD LTR MaLR 1 396 0 4385 255 70 29 chr1 207392221 207393160 -74800504 + L1M4 LINE L1 3956 5003 -1143 1821 133 28 0 chr1 207393160 207393445 -74800219 + AluSx SINE Alu 1 293 -19 4385 255 70 29 chr1 207393445 207393698 -74799966 + L1M4 LINE L1 5003 5244 -902 286 300 80 0 chr1 207393695 207393845 -74799819 - L1MEd LINE L1 -5955 164 3 * 209 344 11 0 chr1 207394586 207394679 -74798985 + GA-rich Low_complexity Low_complexity 2 95 0 207 318 103 32 chr1 207394847 207394973 -74798691 + MIR SINE MIR 127 261 -1 942 197 121 35 chr1 207395024 207395314 -74798350 - MER5C DNA MER1_type 0 324 10 221 337 58 0 chr1 207395904 207395990 -74797674 - MIR SINE MIR -85 177 87 256 342 67 20 chr1 207396311 207396460 -74797204 + L3b LINE CR1 1233 1388 -195 460 322 102 24 chr1 207396663 207396918 -74796746 - L2 LINE L2 0 3313 3039 1485 245 173 52 chr1 207396939 207397677 -74795987 - L2 LINE L2 -480 2834 2007 276 218 11 115 chr1 207397927 207398014 -74795650 - L2 LINE L2 -40 3232 3155 221 353 36 22 chr1 207398076 207398215 -74795449 + MIR3 SINE MIR 68 208 0 1679 274 60 27 chr1 207399601 207400445 -74793219 + L2 LINE L2 2343 3223 -90 566 242 8 0 chr1 207400445 207400573 -74793091 - FLAM_A SINE Alu -1 132 4 1679 274 60 27 chr1 207400573 207400668 -74792996 + L2 LINE L2 3223 3313 0 703 224 112 12 chr1 207400772 207400942 -74792722 - MIR SINE MIR -71 191 5 250 236 131 68 chr1 207401171 207401336 -74792328 + MIR3 SINE MIR 14 193 -15 248 360 0 0 chr1 207401661 207401750 -74791914 + MIR SINE MIR 62 150 -112 181 257 0 0 chr1 207401911 207401946 -74791718 - L3b LINE CR1 -199 1384 1350 297 301 80 9 chr1 207404210 207404323 -74789341 + MIR SINE MIR 1 121 -141 181 366 50 10 chr1 207404520 207404621 -74789043 - L2 LINE L2 -96 3176 3072 241 336 74 0 chr1 207405261 207405383 -74788281 - L2 LINE L2 -6 3266 3136 318 303 211 6 chr1 207406166 207406341 -74787323 + MIR SINE MIR 46 256 -6 357 285 152 39 chr1 207406353 207406662 -74787002 - L2 LINE L2 -566 2748 2405 942 179 20 0 chr1 207407120 207407271 -74786393 - FRAM SINE Alu -12 154 1 625 284 6 12 chr1 207407888 207408057 -74785607 + MIR SINE MIR 95 262 0 890 257 159 45 chr1 207408867 207409505 -74784159 - L2 LINE L2 -1 3312 2591 1690 250 55 65 chr1 207411476 207412148 -74781516 - MER21B LTR ERV1 -107 756 92 24 0 0 0 chr1 207413768 207413792 -74779872 + AT_rich Low_complexity Low_complexity 1 24 0 504 0 0 0 chr1 207416091 207416147 -74777517 + (CA)n Simple_repeat Simple_repeat 2 57 0 274 279 99 56 chr1 207416216 207416449 -74777215 - MIR3 SINE MIR -19 243 4 216 323 83 10 chr1 207416593 207416689 -74776975 + MIR SINE MIR 155 257 -5 233 131 66 33 chr1 207419694 207419755 -74773909 + MIR SINE MIR 187 249 -13 223 330 23 23 chr1 207419783 207419871 -74773793 - MIR SINE MIR 0 262 175 455 296 52 23 chr1 207419963 207420135 -74773529 + MIR SINE MIR 25 201 -61 4219 159 57 12 chr1 207420882 207421663 -74772001 - MER21B LTR ERV1 -9 854 4 248 263 30 59 chr1 207422306 207422407 -74771257 + MIR SINE MIR 17 125 -83 352 263 0 0 chr1 207423503 207423583 -74770081 + MIR SINE MIR 75 154 -108 180 200 0 0 chr1 207424042 207424087 -74769577 + GA-rich Low_complexity Low_complexity 2 46 0 456 249 226 46 chr1 207428925 207429142 -74764522 + MIR SINE MIR 1 256 -6 435 214 0 0 chr1 207432049 207432133 -74761531 + AluJ/FLAM SINE Alu 1 84 -228 22 0 0 0 chr1 207433043 207433065 -74760599 + AT_rich Low_complexity Low_complexity 1 22 0 184 171 29 0 chr1 207434488 207434523 -74759141 + L2 LINE L2 2725 2760 -554 447 320 158 13 chr1 207434529 207434757 -74758907 + MIR SINE MIR 2 262 0 21 0 0 0 chr1 207435164 207435185 -74758479 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 207435836 207435859 -74757805 + AT_rich Low_complexity Low_complexity 1 23 0 465 333 41 14 chr1 207436482 207436629 -74757035 + L2 LINE L2 3122 3272 0 347 236 178 32 chr1 207436986 207437143 -74756521 + MIR3 SINE MIR 13 192 -16 540 224 195 19 chr1 207437193 207437398 -74756266 + MIR SINE MIR 12 252 -10 259 271 0 29 chr1 207439376 207439446 -74754218 - L2 LINE L2 -1 3312 3245 278 322 0 0 chr1 207439560 207439650 -74754014 + (TG)n Simple_repeat Simple_repeat 1 90 0 255 246 16 0 chr1 207440415 207440476 -74753188 - MIR SINE MIR -140 122 61 384 301 32 16 chr1 207440928 207441114 -74752550 + MER5A DNA MER1_type 1 189 0 345 321 93 0 chr1 207441131 207441271 -74752393 + MIR SINE MIR 44 196 -66 212 140 40 20 chr1 207442581 207442631 -74751033 + MIR3 SINE MIR 150 200 -8 198 195 0 24 chr1 207443249 207443290 -74750374 - L2 LINE L2 -10 3262 3223 428 285 54 15 chr1 207443341 207443471 -74750193 - MIR SINE MIR -71 191 57 186 336 66 57 chr1 207444974 207445096 -74748568 - L2 LINE L2 0 3272 3150 262 321 99 0 chr1 207445116 207445247 -74748417 + L2 LINE L2 3161 3304 -9 333 47 0 0 chr1 207447103 207447146 -74746518 + (TG)n Simple_repeat Simple_repeat 1 43 0 201 343 27 0 chr1 207448160 207448233 -74745431 - MIR SINE MIR -106 156 82 513 296 111 6 chr1 207448329 207448501 -74745163 - MIR SINE MIR -45 217 28 214 320 0 0 chr1 207448514 207448589 -74745075 + (CTATA)n Simple_repeat Simple_repeat 1 75 0 277 190 69 0 chr1 207448850 207448908 -74744756 + MIR SINE MIR 108 169 -93 264 311 29 10 chr1 207449085 207449188 -74744476 + MIR SINE MIR 154 258 -4 265 294 63 40 chr1 207449283 207449409 -74744255 - HAL1 LINE L1 -1524 983 855 427 261 14 50 chr1 207449835 207449975 -74743689 + L1MA10 LINE L1 6178 6330 -4 22 70 0 0 chr1 207449978 207450021 -74743643 + AT_rich Low_complexity Low_complexity 1 43 0 317 319 21 28 chr1 207450740 207450881 -74742783 + L3 LINE CR1 1219 1358 -219 28 29 0 0 chr1 207452128 207452163 -74741501 + AT_rich Low_complexity Low_complexity 1 35 0 309 300 40 79 chr1 207455370 207455597 -74738067 + L3 LINE CR1 1357 1574 -3 912 145 17 0 chr1 207455660 207455832 -74737832 - L1MA4 LINE L1 -5 6295 6121 245 208 19 0 chr1 207456013 207456066 -74737598 + GA-rich Low_complexity Low_complexity 2 55 0 246 276 73 65 chr1 207456140 207456263 -74737401 - MIR SINE MIR -138 124 1 545 293 16 37 chr1 207456756 207456944 -74736720 + MIR3 SINE MIR 19 202 -6 916 138 0 0 chr1 207457161 207457291 -74736373 - FLAM_C SINE Alu -2 131 2 635 144 0 0 chr1 207459282 207459372 -74734292 + 5S rRNA rRNA 1 90 -31 244 276 10 61 chr1 207461719 207461817 -74731847 - L2 LINE L2 -7 3265 3173 765 259 36 32 chr1 207462111 207462389 -74731275 - MLT1J LTR MaLR -7 504 226 338 276 115 43 chr1 207462567 207462846 -74730818 - MLT1L LTR MaLR -2 613 315 238 250 0 18 chr1 207462895 207462951 -74730713 - MLT1K LTR MaLR -380 208 154 1371 224 50 3 chr1 207463281 207463580 -74730084 + MER58B DNA MER1_type 1 313 -28 1038 203 11 0 chr1 207464567 207464754 -74728910 + MER58A DNA MER1_type 1 189 -35 393 250 75 17 chr1 207465340 207465460 -74728204 + MIR SINE MIR 79 205 -57 279 0 0 0 chr1 207467537 207467568 -74726096 + (CA)n Simple_repeat Simple_repeat 2 32 0 947 299 187 25 chr1 207569854 207570602 -74623062 + L2 LINE L2 1935 2803 -511 649 336 44 35 chr1 207570690 207571056 -74622608 + L2 LINE L2 2926 3294 -19 331 252 26 113 chr1 207571445 207571596 -74622068 + MIR SINE MIR 79 216 -46 424 311 33 14 chr1 207571732 207571944 -74621720 - LTR33 LTR ERVL 0 521 306 309 263 0 0 chr1 207572030 207572106 -74621558 - LTR33 LTR ERVL -398 123 48 323 308 138 46 chr1 207573569 207573764 -74619900 - MIR SINE MIR -6 256 44 197 256 141 83 chr1 207574745 207574901 -74618763 - MIR SINE MIR -14 248 84 258 239 0 60 chr1 207575180 207575247 -74618417 - L2 LINE L2 -1 3312 3250 1080 256 59 26 chr1 207576721 207577142 -74616522 - L1M4 LINE L1 -1062 5084 4650 1778 167 91 0 chr1 207577142 207577471 -74616193 - Tigger2 DNA MER2_type -10 2708 2350 * 8939 125 41 11 chr1 207577454 207578098 -74615566 - Tigger2 DNA MER2_type -1282 1436 812 212 0 36 0 chr1 207578098 207578126 -74615538 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 8939 125 41 11 chr1 207578126 207578876 -74614788 - Tigger2 DNA MER2_type -1906 812 1 2269 262 95 22 chr1 207578876 207579091 -74614573 - L1M4 LINE L1 -1493 4653 4455 2271 103 0 0 chr1 207579091 207579391 -74614273 - AluSg1 SINE Alu -9 300 1 2269 262 95 22 chr1 207579391 207580236 -74613428 - L1M4 LINE L1 -1691 4455 3506 203 0 37 0 chr1 207580240 207580267 -74613397 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2188 113 7 10 chr1 207580341 207580651 -74613013 + AluSc SINE Alu 1 309 0 928 218 90 42 chr1 207580747 207581147 -74612517 - L1M4 LINE L1 -2654 3492 3074 245 132 0 0 chr1 207581154 207581192 -74612472 - L1M4 LINE L1 -3886 2260 2223 214 273 80 57 chr1 207581220 207581308 -74612356 + L2 LINE L2 3181 3270 -2 2234 116 3 3 chr1 207582191 207582493 -74611171 + AluSx SINE Alu 1 302 -10 490 298 8 0 chr1 207582610 207582731 -74610933 + L2 LINE L2 3187 3308 -5 2248 250 77 38 chr1 207582902 207583986 -74609678 - L2 LINE L2 -1 3312 2186 294 250 60 0 chr1 207584783 207584867 -74608797 - MER91C DNA MER1_type -1 139 51 181 379 23 8 chr1 207585085 207585217 -74608447 - L2 LINE L2 -504 2810 2677 250 310 23 23 chr1 207585637 207585724 -74607940 - MIR SINE MIR -79 183 97 1690 154 68 38 chr1 207586274 207586643 -74607021 - MLT1B LTR MaLR -8 382 3 15050 126 38 20 chr1 207587475 207587802 -74605862 - Tigger1 DNA MER2_type -2 2416 2096 2338 163 50 17 chr1 207587802 207588219 -74605445 - MSTB1 LTR MaLR -1 431 1 15050 126 38 20 chr1 207588219 207590266 -74603398 - Tigger1 DNA MER2_type -322 2096 1 252 274 104 52 chr1 207590304 207590439 -74603225 + MIR3 SINE MIR 21 162 -46 232 245 0 0 chr1 207590592 207590645 -74603019 + MIR3 SINE MIR 156 208 0 347 196 157 0 chr1 207590901 207591003 -74602661 + L1ME4a LINE L1 6002 6119 -2 223 189 0 19 chr1 207591092 207591145 -74602519 - L2 LINE L2 0 3313 3262 180 111 0 0 chr1 207591440 207591467 -74602197 - L2 LINE L2 -562 2752 2726 247 314 23 0 chr1 207592831 207592917 -74600747 - L2 LINE L2 -5 3308 3221 23 54 0 0 chr1 207593446 207593483 -74600181 + AT_rich Low_complexity Low_complexity 1 37 0 349 239 102 25 chr1 207593561 207593758 -74599906 + L1ME LINE L1 5263 5474 -696 283 259 12 12 chr1 207596224 207596305 -74597359 + MIR SINE MIR 23 103 -105 24 32 0 0 chr1 207596438 207596469 -74597195 + AT_rich Low_complexity Low_complexity 1 31 0 190 268 175 52 chr1 207596698 207596795 -74596869 - L2 LINE L2 -14 3258 3150 2065 142 0 0 chr1 207597399 207597695 -74595969 - AluSx SINE Alu -16 296 1 411 272 46 38 chr1 207597710 207597868 -74595796 - MIR SINE MIR -63 145 20 445 297 93 11 chr1 207598003 207598185 -74595479 + MIR SINE MIR 22 218 -44 203 298 0 57 chr1 207599271 207599395 -74594269 + CT-rich Low_complexity Low_complexity 4 120 0 797 218 67 0 chr1 207599464 207599629 -74594035 - MER5A DNA MER1_type -13 176 1 355 276 147 29 chr1 207599712 207599882 -74593782 - L2 LINE L2 0 3313 3124 188 289 0 0 chr1 207600053 207600098 -74593566 - MIR SINE MIR -2 260 216 685 254 123 9 chr1 207600110 207600338 -74593326 + MIR SINE MIR 9 262 0 522 129 0 0 chr1 207601304 207601389 -74592275 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 540 332 100 43 chr1 207601480 207601920 -74591744 - L2 LINE L2 -1 3271 2807 2224 132 29 42 chr1 207602505 207602885 -74590779 + THE1C LTR MaLR 1 375 0 2315 88 0 3 chr1 207602992 207603287 -74590377 - AluY SINE Alu -17 294 1 196 350 30 20 chr1 207603855 207603955 -74589709 - L3 LINE CR1 -3 1574 1474 2528 81 0 0 chr1 207605603 207605913 -74587751 - AluSg SINE Alu 0 310 1 439 311 104 0 chr1 207605993 207606157 -74587507 + MIR3 SINE MIR 5 185 -23 23 0 0 0 chr1 207606853 207606876 -74586788 + AT_rich Low_complexity Low_complexity 1 23 0 359 292 23 8 chr1 207608178 207608308 -74585356 + MIR3 SINE MIR 49 180 -28 1002 236 80 73 chr1 207608526 207608925 -74584739 - LTR16A1 LTR ERVL 0 457 56 481 271 44 112 chr1 207609497 207609748 -74583916 + L2 LINE L2 3034 3267 -5 591 254 155 21 chr1 207610108 207610301 -74583363 + MER20 DNA MER1_type 1 219 0 223 273 45 30 chr1 207612136 207612202 -74581462 - L2 LINE L2 -35 3278 3212 192 200 0 25 chr1 207612577 207612617 -74581047 - L3 LINE CR1 -71 1506 1468 4232 100 7 14 chr1 207613334 207613916 -74579748 + L1PA13 LINE L1 5577 6154 -9 189 309 62 21 chr1 207614944 207615041 -74578623 + MIR SINE MIR 82 182 -80 308 293 13 0 chr1 207615436 207615511 -74578153 - L2 LINE L2 -5 3267 3192 189 333 67 0 chr1 207615644 207615704 -74577960 - L2 LINE L2 -38 3234 3171 1254 253 121 65 chr1 207616264 207616940 -74576724 + HAL1 LINE L1 2 715 -1792 1181 222 157 32 chr1 207616989 207617110 -74576554 - MLT1D LTR MaLR 0 505 400 2460 112 57 14 chr1 207617110 207617459 -74576205 + THE1B LTR MaLR 1 364 0 1181 222 157 32 chr1 207617459 207617769 -74575895 - MLT1D LTR MaLR -104 401 20 517 277 48 88 chr1 207617793 207618395 -74575269 + HAL1 LINE L1 764 1341 -1166 277 318 31 8 chr1 207618403 207618532 -74575132 + L1P4 LINE L1 5679 5810 -351 2489 49 7 3 chr1 207618604 207618909 -74574755 + AluY SINE Alu 1 306 -5 35 41 0 0 chr1 207619044 207619093 -74574571 + AT_rich Low_complexity Low_complexity 1 49 0 2044 263 83 62 chr1 207619160 207619769 -74573895 + HAL1 LINE L1 1346 1992 -515 7608 134 44 2 chr1 207619769 207620951 -74572713 + Tigger3b DNA MER2_type 1 1231 0 2044 263 83 62 chr1 207620951 207621479 -74572185 + HAL1 LINE L1 1992 2507 0 407 229 105 59 chr1 207622228 207622381 -74571283 + MIR SINE MIR 9 168 -94 227 328 0 16 chr1 207623718 207623779 -74569885 - MIR SINE MIR -124 84 25 253 377 0 0 chr1 207624173 207624250 -74569414 - L2 LINE L2 -8 3264 3188 247 295 80 36 chr1 207624788 207624900 -74568764 - L2 LINE L2 -21 3251 3138 527 332 63 9 chr1 207625577 207625800 -74567864 - MIR SINE MIR -13 249 15 372 279 37 43 chr1 207626146 207626307 -74567357 - MIR3 SINE MIR -29 179 20 654 298 57 20 chr1 207626320 207626568 -74567096 + MIR SINE MIR 4 260 -2 759 289 0 5 chr1 207627083 207627273 -74566391 - MIR SINE MIR -10 252 64 290 279 135 0 chr1 207627973 207628077 -74565587 - MIR SINE MIR -74 188 71 291 167 273 30 chr1 207628255 207628321 -74565343 - L2 LINE L2 -39 3274 3193 318 287 0 20 chr1 207629034 207629058 -74564606 + (CATA)n Simple_repeat Simple_repeat 2 25 -75 237 65 0 0 chr1 207629058 207629089 -74564575 + (CA)n Simple_repeat Simple_repeat 2 32 0 318 287 0 20 chr1 207629089 207629165 -74564499 + (CATA)n Simple_repeat Simple_repeat 25 100 0 1652 122 4 4 chr1 207629408 207629662 -74564002 + L1MA6 LINE L1 6047 6300 0 238 288 0 0 chr1 207629748 207629807 -74563857 + L2 LINE L2 2302 2360 -954 510 211 88 9 chr1 207630190 207630304 -74563360 - L2 LINE L2 -9 3304 3182 421 351 91 11 chr1 207630323 207630599 -74563065 + L1M4 LINE L1 4492 4789 -1357 273 231 13 26 chr1 207630609 207630687 -74562977 + (TA)n Simple_repeat Simple_repeat 1 77 0 227 316 45 32 chr1 207630724 207630879 -74562785 + L1P LINE L1 4902 5058 -1088 4414 164 76 8 chr1 207631746 207632550 -74561114 - L1MD2 LINE L1 0 6359 5501 2034 132 10 3 chr1 207632649 207632937 -74560727 + AluJo SINE Alu 1 290 -22 195 306 204 67 chr1 207633326 207633581 -74560083 + L2 LINE L2 2965 3254 -18 1769 163 29 0 chr1 207634951 207635227 -74558437 - AluJo SINE Alu -28 284 1 403 250 179 13 chr1 207635229 207635385 -74558279 - L2 LINE L2 -14 3299 3118 207 0 0 0 chr1 207635629 207635652 -74558012 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4040 97 28 0 chr1 207635740 207636278 -74557386 + L1PA14 LINE L1 5596 6148 -13 332 287 37 83 chr1 207636872 207637088 -74556576 - LTR16C LTR ERVL -65 426 221 246 176 0 0 chr1 207637094 207637145 -74556519 + (TG)n Simple_repeat Simple_repeat 2 52 0 276 91 91 0 chr1 207637404 207637448 -74556216 - L2 LINE L2 -2 3311 3264 2339 74 0 49 chr1 207637999 207638324 -74555340 + AluY SINE Alu 1 309 -2 25 0 0 0 chr1 207639548 207639573 -74554091 + AT_rich Low_complexity Low_complexity 1 25 0 258 270 108 0 chr1 207640418 207640492 -74553172 + L2 LINE L2 3232 3313 0 747 254 53 5 chr1 207642595 207642784 -74550880 + MIR SINE MIR 50 247 -15 221 344 128 18 chr1 207643087 207643314 -74550350 - MIR SINE MIR -9 253 2 1428 161 82 36 chr1 207643756 207644035 -74549629 + AluJb SINE Alu 20 311 -1 235 335 142 7 chr1 207645105 207645260 -74548404 + L2 LINE L2 2203 2378 -936 228 369 119 0 chr1 207645389 207645549 -74548115 + L2 LINE L2 2595 2773 -541 476 229 139 0 chr1 207645594 207645716 -74547948 + MIR SINE MIR 36 174 -88 196 189 75 0 chr1 207645815 207645868 -74547796 + L2 LINE L2 2828 2884 -429 239 269 290 0 chr1 207645943 207646036 -74547628 - MLT1I LTR MaLR -286 123 4 186 294 103 48 chr1 207646245 207646391 -74547273 - MIR3 SINE MIR -25 183 30 2901 141 14 9 chr1 207646438 207646864 -74546800 - MSTA LTR MaLR 0 428 1 193 277 101 97 chr1 207646883 207647150 -74546514 + L2 LINE L2 2997 3264 -8 5716 118 15 4 chr1 207647334 207648671 -74544993 - L1PA15 LINE L1 -3 6162 4861 257 233 116 0 chr1 207649948 207650034 -74543630 - MIR SINE MIR -90 118 23 2474 80 3 3 chr1 207650177 207650488 -74543176 - AluSp SINE Alu -2 311 1 22 0 0 0 chr1 207651657 207651679 -74541985 + AT_rich Low_complexity Low_complexity 1 22 0 2426 158 38 25 chr1 207652424 207652898 -74540766 - L1MA7 LINE L1 0 6291 5812 * 8436 84 6 0 chr1 207652889 207654748 -74538916 - L1PA7 LINE L1 -3 6151 4279 276 238 79 61 chr1 207654876 207655090 -74538574 - L1MEd LINE L1 -4862 1257 1040 367 236 73 8 chr1 207655099 207655222 -74538442 - L1M4 LINE L1 -1625 4521 4391 447 254 66 20 chr1 207655291 207655488 -74538176 + L1M4 LINE L1 3256 3461 -2685 * 6589 172 28 11 chr1 207655463 207657712 -74535952 + L1PA16 LINE L1 3883 6166 0 4656 255 70 29 chr1 207657709 207658271 -74535393 + L1M4 LINE L1 3418 3956 -2190 * 1845 183 86 21 chr1 207658271 207658643 -74535021 + MSTD LTR MaLR 1 396 0 4656 255 70 29 chr1 207658643 207659582 -74534082 + L1M4 LINE L1 3956 5003 -1143 1922 133 28 0 chr1 207659582 207659867 -74533797 + AluSx SINE Alu 1 293 -19 4656 255 70 29 chr1 207659867 207660120 -74533544 + L1M4 LINE L1 5003 5244 -902 307 300 80 0 chr1 207660117 207660267 -74533397 - L1MEd LINE L1 -5955 164 3 * 209 344 11 0 chr1 207661008 207661101 -74532563 + GA-rich Low_complexity Low_complexity 2 95 0 183 325 103 32 chr1 207661269 207661395 -74532269 + MIR SINE MIR 127 261 -1 882 200 121 35 chr1 207661446 207661736 -74531928 - MER5C DNA MER1_type 0 324 10 213 337 58 0 chr1 207662326 207662412 -74531252 - MIR SINE MIR -85 177 87 236 336 67 20 chr1 207662733 207662882 -74530782 + L3b LINE CR1 1233 1388 -195 434 329 90 12 chr1 207663085 207663340 -74530324 - L2 LINE L2 0 3313 3039 1424 251 168 52 chr1 207663353 207664099 -74529565 - L2 LINE L2 -476 2838 2007 276 218 11 115 chr1 207664349 207664436 -74529228 - L2 LINE L2 -40 3232 3155 208 353 36 22 chr1 207664498 207664637 -74529027 + MIR3 SINE MIR 68 208 0 1641 271 62 29 chr1 207666023 207666867 -74526797 + L2 LINE L2 2343 3222 -91 606 242 8 0 chr1 207666867 207666995 -74526669 - FLAM_A SINE Alu -1 132 4 1641 271 62 29 chr1 207666995 207667086 -74526578 + L2 LINE L2 3222 3309 -4 693 224 112 12 chr1 207667194 207667364 -74526300 - MIR SINE MIR -71 191 5 232 236 131 68 chr1 207667593 207667758 -74525906 + MIR3 SINE MIR 14 193 -15 229 322 0 0 chr1 207668083 207668174 -74525490 + MIR SINE MIR 63 153 -55 298 301 80 9 chr1 207670632 207670745 -74522919 + MIR SINE MIR 1 121 -141 187 366 50 10 chr1 207670942 207671043 -74522621 - L2 LINE L2 -96 3176 3072 243 336 74 0 chr1 207671683 207671805 -74521859 - L2 LINE L2 -6 3266 3136 302 303 211 6 chr1 207672588 207672763 -74520901 + MIR SINE MIR 46 256 -6 339 278 152 39 chr1 207672775 207673084 -74520580 - L2 LINE L2 -566 2748 2405 997 179 20 0 chr1 207673542 207673693 -74519971 - FRAM SINE Alu -12 154 1 595 284 6 12 chr1 207674310 207674479 -74519185 + MIR SINE MIR 95 262 0 904 262 167 36 chr1 207675289 207675927 -74517737 - L2 LINE L2 -1 3312 2591 1523 255 56 64 chr1 207677898 207678572 -74515092 - MER21B LTR ERV1 -107 756 88 24 0 0 0 chr1 207680190 207680214 -74513450 + AT_rich Low_complexity Low_complexity 1 24 0 396 0 0 0 chr1 207682513 207682557 -74511107 + (CA)n Simple_repeat Simple_repeat 2 45 0 280 279 99 56 chr1 207682626 207682859 -74510805 - MIR3 SINE MIR -19 243 4 211 323 83 10 chr1 207683003 207683099 -74510565 + MIR SINE MIR 155 257 -5 180 338 95 0 chr1 207683369 207683443 -74510221 + L3b LINE CR1 1285 1365 -218 231 131 66 33 chr1 207686104 207686165 -74507499 + MIR SINE MIR 187 249 -13 218 330 23 23 chr1 207686193 207686281 -74507383 - MIR SINE MIR 0 262 175 448 296 52 23 chr1 207686373 207686545 -74507119 + MIR SINE MIR 25 201 -61 3955 160 57 12 chr1 207687292 207688073 -74505591 - MER21B LTR ERV1 -9 854 4 256 283 18 58 chr1 207688716 207688818 -74504846 + MIR SINE MIR 17 125 -83 322 363 31 38 chr1 207689188 207689348 -74504316 + MIR SINE MIR 48 206 -56 1883 290 125 36 chr1 207690103 207691440 -74502224 - L2 LINE L2 0 3313 1797 213 208 21 0 chr1 207692109 207692157 -74501507 - L2 LINE L2 -898 2416 2368 185 264 75 0 chr1 207692164 207692217 -74501447 + L2 LINE L2 3257 3313 0 316 327 18 68 chr1 207693354 207693538 -74500126 + MIR SINE MIR 18 192 -56 209 343 0 43 chr1 207696989 207697059 -74496605 + MIR SINE MIR 106 172 -90 596 240 30 13 chr1 207697997 207698155 -74495509 + MIR3 SINE MIR 35 203 -5 210 293 22 39 chr1 207698282 207698463 -74495201 + (CCCTAA)n Simple_repeat Simple_repeat 1 178 0 255 322 0 38 chr1 207698555 207698738 -74494926 + (CCCCAA)n Simple_repeat Simple_repeat 2 177 0 349 263 0 0 chr1 207699678 207699758 -74493906 + MIR SINE MIR 75 154 -108 180 200 0 0 chr1 207700217 207700262 -74493402 + GA-rich Low_complexity Low_complexity 2 46 0 461 249 226 46 chr1 207705100 207705317 -74488347 + MIR SINE MIR 1 256 -6 451 214 0 0 chr1 207708224 207708308 -74485356 + AluJ/FLAM SINE Alu 1 84 -228 22 0 0 0 chr1 207709218 207709240 -74484424 + AT_rich Low_complexity Low_complexity 1 22 0 183 171 29 0 chr1 207710663 207710698 -74482966 + L2 LINE L2 2725 2760 -554 439 320 158 13 chr1 207710704 207710932 -74482732 + MIR SINE MIR 2 262 0 21 0 0 0 chr1 207711339 207711360 -74482304 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 207712011 207712034 -74481630 + AT_rich Low_complexity Low_complexity 1 23 0 461 333 41 14 chr1 207712657 207712804 -74480860 + L2 LINE L2 3122 3272 0 356 236 178 32 chr1 207713161 207713318 -74480346 + MIR3 SINE MIR 13 192 -16 533 237 145 44 chr1 207713368 207713596 -74480068 + MIR SINE MIR 12 262 0 257 271 0 29 chr1 207715551 207715621 -74478043 - L2 LINE L2 -1 3312 3245 278 322 0 0 chr1 207715735 207715825 -74477839 + (TG)n Simple_repeat Simple_repeat 1 90 0 260 246 16 0 chr1 207716590 207716651 -74477013 - MIR SINE MIR -140 122 61 182 264 55 104 chr1 207716836 207717018 -74476646 - MIR3 SINE MIR -35 173 1 414 301 32 16 chr1 207717103 207717289 -74476375 + MER5A DNA MER1_type 1 189 0 346 321 93 0 chr1 207717306 207717446 -74476218 + MIR SINE MIR 44 196 -66 210 140 40 20 chr1 207718756 207718806 -74474858 + MIR3 SINE MIR 150 200 -8 198 195 0 24 chr1 207719424 207719465 -74474199 - L2 LINE L2 -10 3262 3223 424 285 54 15 chr1 207719516 207719646 -74474018 - MIR SINE MIR -71 191 57 187 336 66 57 chr1 207721149 207721271 -74472393 - L2 LINE L2 0 3272 3150 264 321 99 0 chr1 207721291 207721422 -74472242 + L2 LINE L2 3161 3304 -9 315 49 0 0 chr1 207723278 207723319 -74470345 + (TG)n Simple_repeat Simple_repeat 1 41 0 191 343 27 0 chr1 207724333 207724406 -74469258 - MIR SINE MIR -106 156 82 511 296 111 6 chr1 207724502 207724674 -74468990 - MIR SINE MIR -45 217 28 214 320 0 0 chr1 207724687 207724762 -74468902 + (CTATA)n Simple_repeat Simple_repeat 1 75 0 274 190 69 0 chr1 207725023 207725081 -74468583 + MIR SINE MIR 108 169 -93 265 304 26 17 chr1 207725246 207725361 -74468303 + MIR SINE MIR 143 258 -4 256 309 48 24 chr1 207725456 207725582 -74468082 - HAL1 LINE L1 -1524 983 855 427 261 14 50 chr1 207726008 207726148 -74467516 + L1MA10 LINE L1 6178 6330 -4 22 70 0 0 chr1 207726151 207726194 -74467470 + AT_rich Low_complexity Low_complexity 1 43 0 317 319 21 28 chr1 207726913 207727054 -74466610 + L3 LINE CR1 1219 1358 -219 28 29 0 0 chr1 207728301 207728336 -74465328 + AT_rich Low_complexity Low_complexity 1 35 0 309 300 40 79 chr1 207731543 207731770 -74461894 + L3 LINE CR1 1357 1574 -3 912 145 17 0 chr1 207731833 207732005 -74461659 - L1MA4 LINE L1 -5 6295 6121 245 208 19 0 chr1 207732186 207732239 -74461425 + GA-rich Low_complexity Low_complexity 2 55 0 246 276 73 65 chr1 207732313 207732436 -74461228 - MIR SINE MIR -138 124 1 545 293 16 37 chr1 207732929 207733117 -74460547 + MIR3 SINE MIR 19 202 -6 916 138 0 0 chr1 207733334 207733464 -74460200 - FLAM_C SINE Alu -2 131 2 614 156 0 0 chr1 207735451 207735541 -74458123 + 5S rRNA rRNA 1 90 -31 244 276 10 61 chr1 207737888 207737986 -74455678 - L2 LINE L2 -7 3265 3173 765 259 36 32 chr1 207738279 207738557 -74455107 - MLT1J LTR MaLR -7 504 226 338 276 115 43 chr1 207738735 207739014 -74454650 - MLT1L LTR MaLR -2 613 315 238 250 0 18 chr1 207739063 207739119 -74454545 - MLT1K LTR MaLR -380 208 154 1371 224 50 3 chr1 207739449 207739748 -74453916 + MER58B DNA MER1_type 1 313 -28 1038 203 11 0 chr1 207740735 207740922 -74452742 + MER58A DNA MER1_type 1 189 -35 393 250 75 17 chr1 207741508 207741628 -74452036 + MIR SINE MIR 79 205 -57 351 0 0 0 chr1 207743705 207743744 -74449920 + (CA)n Simple_repeat Simple_repeat 2 40 0 191 88 29 0 chr1 207747368 207747402 -74446262 + (CAA)n Simple_repeat Simple_repeat 2 36 0 198 257 114 14 chr1 207747835 207747905 -74445759 + MIR3 SINE MIR 125 201 -7 217 238 0 0 chr1 207747905 207747947 -74445717 + L2 LINE L2 3262 3303 -10 249 268 138 41 chr1 207748976 207749099 -74444565 + L2 LINE L2 3177 3311 -2 408 306 79 48 chr1 207750114 207750366 -74443298 - MIR SINE MIR 0 262 3 2151 65 32 0 chr1 207751005 207751284 -74442380 - AluY SINE Alu -8 303 16 461 336 118 22 chr1 207751431 207752195 -74441469 - L2 LINE L2 0 3272 2377 205 238 109 99 chr1 207752224 207752325 -74441339 - L2 LINE L2 -41 3272 3171 460 325 59 11 chr1 207752371 207752612 -74441052 - L2 LINE L2 -257 3015 2770 1388 188 35 11 chr1 207752761 207753043 -74440621 - AluJo SINE Alu -17 295 7 25 0 0 0 chr1 207754179 207754204 -74439460 + AT_rich Low_complexity Low_complexity 1 25 0 2241 84 0 7 chr1 207755081 207755380 -74438284 + AluY SINE Alu 1 297 -14 522 206 109 11 chr1 207756841 207757016 -74436648 + Charlie5 DNA MER1_type 2387 2578 -34 2281 85 0 0 chr1 207759340 207759634 -74434030 - AluY SINE Alu -17 294 1 576 0 0 0 chr1 207759662 207759726 -74433938 + (TA)n Simple_repeat Simple_repeat 2 65 0 369 362 31 8 chr1 207759729 207759856 -74433808 - MIR3 SINE MIR -49 159 30 1002 163 259 52 chr1 207760199 207760488 -74433176 - MLT1A2 LTR MaLR -12 362 14 436 227 195 19 chr1 207761882 207762036 -74431628 + MER5A DNA MER1_type 2 182 -7 183 230 54 40 chr1 207762064 207762138 -74431526 + L2 LINE L2 101 175 -3139 620 268 0 7 chr1 207770952 207771094 -74422570 + FLAM_A SINE Alu 1 141 -1 554 378 25 0 chr1 207772294 207772535 -74421129 + MIR SINE MIR 8 254 -8 414 303 61 53 chr1 207774018 207774166 -74419498 + MIR SINE MIR 36 185 -77 258 32 0 0 chr1 207774166 207774197 -74419467 + (CA)n Simple_repeat Simple_repeat 2 32 0 414 303 61 53 chr1 207774197 207774276 -74419388 + MIR SINE MIR 185 262 0 511 357 70 48 chr1 207774280 207774594 -74419070 - L2 LINE L2 -1 3271 2951 201 147 0 0 chr1 207776094 207776128 -74417536 + (GAA)n Simple_repeat Simple_repeat 3 36 0 385 290 28 9 chr1 207776668 207776775 -74416889 - MER81 DNA DNA -4 110 2 578 291 16 42 chr1 207776908 207777097 -74416567 - MER5A DNA MER1_type 0 189 6 590 271 173 28 chr1 207777842 207778097 -74415567 - L3 LINE CR1 -218 1359 1068 744 166 7 7 chr1 207778385 207778524 -74415140 + MLT1A1 LTR MaLR 1 139 -226 1177 208 70 62 chr1 207778524 207778880 -74414784 - MLT1A1 LTR MaLR -1 364 6 3219 31 5 0 chr1 207778949 207779333 -74414331 + L1PA4 LINE L1 5770 6155 0 244 89 44 0 chr1 207779349 207779394 -74414270 + L1MB7 LINE L1 6138 6184 0 252 0 0 0 chr1 207779399 207779427 -74414237 + (A)n Simple_repeat Simple_repeat 1 28 0 775 184 43 6 chr1 207779427 207779590 -74414074 + MLT1A1 LTR MaLR 197 365 0 558 197 36 7 chr1 207779712 207779849 -74413815 - L1MB8 LINE L1 -3 6175 6035 553 311 160 0 chr1 207780080 207780292 -74413372 + MIR SINE MIR 2 247 -15 369 287 57 51 chr1 207780452 207780609 -74413055 - MIR3 SINE MIR -10 198 41 224 266 47 31 chr1 207780622 207780686 -74412978 + L2 LINE L2 3249 3313 0 316 349 90 76 chr1 207780723 207781078 -74412586 + L2 LINE L2 2880 3239 -33 672 271 64 76 chr1 207781108 207781279 -74412385 + MLT1J LTR MaLR 3 175 -336 4780 90 6 16 chr1 207781279 207781946 -74411718 + PABL_A LTR ERV1 1 660 0 672 271 64 76 chr1 207781946 207782258 -74411406 + MLT1J LTR MaLR 175 480 -31 1720 209 41 57 chr1 207782919 207783432 -74410232 - MLT1D LTR MaLR 0 505 1 1101 212 66 49 chr1 207783501 207783912 -74409752 - L1M4 LINE L1 -1149 4997 4580 418 211 19 8 chr1 207783934 207784065 -74409599 - L1M4 LINE L1 -2369 3777 3638 2519 89 0 3 chr1 207784842 207785190 -74408474 + L1PB1 LINE L1 5800 6146 -5 189 349 29 63 chr1 207785205 207785380 -74408284 - L2 LINE L2 -5 3267 3099 243 246 33 0 chr1 207785433 207785494 -74408170 + L2 LINE L2 3251 3313 0 3955 250 106 48 chr1 207786007 207786277 -74407387 + L1MEc LINE L1 34 287 -5928 216 0 0 0 chr1 207786277 207786301 -74407363 + (GGAGA)n Simple_repeat Simple_repeat 4 27 0 3955 250 106 48 chr1 207786301 207787409 -74406255 + L1MEc LINE L1 287 1329 -4886 1274 227 91 73 chr1 207787409 207787903 -74405761 + MLT1D LTR MaLR 1 503 -2 3955 250 106 48 chr1 207787903 207790218 -74403446 + L1MEc LINE L1 1329 3924 -2291 * 10069 162 59 59 chr1 207790201 207792939 -74400725 + L1M4c LINE L1 5 2735 -3647 1685 253 4 28 chr1 207792941 207793617 -74400047 + L1M4c LINE L1 3092 3751 -2631 6320 73 3 8 chr1 207793617 207795176 -74398488 + HERV9 LTR ERV1 5677 7305 -1094 7652 116 56 69 chr1 207795189 207797928 -74395736 + pTR5 LTR ERV1 504 8399 0 4585 174 55 11 chr1 207797968 207799015 -74394649 + L1MB3 LINE L1 3076 4169 -1977 562 91 45 0 chr1 207799016 207799126 -74394538 + L1M LINE L1 5254 5368 -937 8140 147 146 8 chr1 207799137 207800746 -74392918 + L1MA6 LINE L1 1 1832 -5031 5259 154 20 34 chr1 207800729 207801386 -74392278 + L1MA6 LINE L1 5422 6086 -930 * 1923 148 3 13 chr1 207801386 207801684 -74391980 + AluSx SINE Alu 1 295 -17 5259 154 20 34 chr1 207801684 207802615 -74391049 + L1MA6 LINE L1 6086 7010 -6 4426 182 36 18 chr1 207802621 207803488 -74390176 + L1MB3 LINE L1 4457 5307 -876 726 145 4 183 chr1 207803488 207803723 -74389941 - 7SK RNA RNA 0 193 1 4426 182 36 18 chr1 207803723 207804533 -74389131 + L1MB3 LINE L1 5307 6180 -3 524 271 28 0 chr1 207804547 207804724 -74388940 + L1M4 LINE L1 3851 4032 -2114 315 154 66 110 chr1 207805104 207805240 -74388424 - L1MC4 LINE L1 0 8042 7913 2156 96 0 59 chr1 207805265 207805588 -74388076 - AluSc SINE Alu -1 308 5 249 257 119 0 chr1 207805590 207805699 -74387965 - L1MC4 LINE L1 -871 7171 7050 325 309 28 59 chr1 207805759 207806083 -74387581 - L1ME LINE L1 -4803 1279 966 1577 195 10 14 chr1 207806101 207806398 -74387266 - AluJb SINE Alu -16 296 1 238 261 88 56 chr1 207806497 207806781 -74386883 - L1ME LINE L1 -5100 970 678 2031 138 28 0 chr1 207807245 207807571 -74386093 - L1PA15 LINE L1 -254 5911 5577 1928 153 7 3 chr1 207807571 207807872 -74385792 + AluSx SINE Alu 1 302 -10 689 299 9 14 chr1 207808374 207808585 -74385079 + MER63A DNA MER1_type 1 210 0 200 327 0 0 chr1 207809034 207809089 -74384575 - L3 LINE CR1 -11 1566 1512 1297 149 0 0 chr1 207809595 207809840 -74383824 - AluSg/x SINE Alu 0 339 95 371 107 0 0 chr1 207809840 207809896 -74383768 - Alu SINE Alu -244 56 1 188 234 234 13 chr1 207810828 207810905 -74382759 + MIR SINE MIR 125 218 -44 456 256 89 12 chr1 207810911 207811079 -74382585 + MLT1J2 LTR MaLR 2 182 -268 399 224 67 30 chr1 207811552 207811686 -74381978 + MLT1J2 LTR MaLR 7 145 -305 2461 125 42 1 chr1 207811746 207812293 -74381371 + L1PB4 LINE L1 5106 5673 -483 347 145 14 0 chr1 207812293 207812362 -74381302 + (TG)n Simple_repeat Simple_repeat 2 71 0 2313 119 43 0 chr1 207812397 207812775 -74380889 + L1PB4 LINE L1 5645 6039 -117 23856 140 11 10 chr1 207812778 207819152 -74374512 + L1PA8A LINE L1 6 6444 -2 874 128 0 0 chr1 207819156 207819289 -74374375 + L1PB4 LINE L1 6023 6155 -1 597 231 23 0 chr1 207819581 207819711 -74373953 - MER3 DNA MER1_type -76 133 1 381 338 142 52 chr1 207821296 207821719 -74371945 - L2 LINE L2 -5 3267 2807 222 286 0 0 chr1 207821776 207821832 -74371832 + L3 LINE CR1 1509 1564 -13 250 316 94 8 chr1 207822297 207822414 -74371250 + L3 LINE CR1 430 556 -1021 226 322 59 34 chr1 207822411 207822529 -74371135 + L2 LINE L2 3193 3313 0 * 443 285 118 27 chr1 207822926 207823147 -74370517 - L3 LINE CR1 -194 1383 1143 5043 203 63 130 chr1 207823219 207823965 -74369699 + L1MC4a LINE L1 5218 6013 -1795 2871 0 0 3 chr1 207823965 207824277 -74369387 + AluYa5 SINE Alu 1 311 0 5043 203 63 130 chr1 207824277 207824432 -74369232 + L1MC4a LINE L1 6013 6177 -1631 204 67 0 0 chr1 207824432 207824462 -74369202 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 5043 203 63 130 chr1 207824462 207824586 -74369078 + L1MC4a LINE L1 6177 6308 -1500 611 159 84 0 chr1 207824586 207824693 -74368971 - MER7A DNA MER2_type 0 337 222 574 226 0 0 chr1 207824695 207824810 -74368854 - MER7A DNA MER2_type -233 113 1 5043 203 63 130 chr1 207824810 207826223 -74367441 + L1MC4a LINE L1 6309 7701 -107 2221 139 26 11 chr1 207826228 207826608 -74367056 + MLT1B LTR MaLR 5 390 0 1943 145 53 11 chr1 207826608 207826988 -74366676 + L1MB3 LINE L1 5787 6182 -1 900 193 57 37 chr1 207827006 207827250 -74366414 + MLT1C LTR MaLR 173 421 -46 318 297 77 0 chr1 207827715 207827806 -74365858 - L2 LINE L2 0 3313 3216 1162 311 49 16 chr1 207827806 207828202 -74365462 + LTR16B LTR ERVL 1 415 -49 2281 162 65 2 chr1 207828202 207828603 -74365061 - MSTB LTR MaLR 0 426 1 1162 311 49 16 chr1 207828603 207828653 -74365011 + LTR16B LTR ERVL 415 462 -2 885 180 26 110 chr1 207828685 207828894 -74364770 + MIR SINE MIR 13 195 -67 5405 132 21 13 chr1 207828894 207830590 -74363074 + L1PA16 LINE L1 4456 6164 -2 885 180 26 110 chr1 207830590 207830652 -74363012 + MIR SINE MIR 195 261 -1 198 390 31 6 chr1 207830878 207831037 -74362627 - L2 LINE L2 -298 2974 2812 26 64 0 0 chr1 207831790 207831837 -74361827 + AT_rich Low_complexity Low_complexity 1 47 0 2411 176 21 0 chr1 207832246 207832667 -74360997 - MSTB1 LTR MaLR -2 430 1 5149 253 63 40 chr1 207833113 207834310 -74359354 + L1MEc LINE L1 35 1203 -5193 261 0 0 0 chr1 207834310 207834339 -74359325 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5149 253 63 40 chr1 207834339 207834589 -74359075 + L1MEc LINE L1 1203 1446 -4950 2363 86 0 3 chr1 207834589 207834890 -74358774 + AluY SINE Alu 1 300 -11 5149 253 63 40 chr1 207834890 207835790 -74357874 + L1MEc LINE L1 1446 2438 -3958 3637 223 54 10 chr1 207835839 207836836 -74356828 + L1PB1 LINE L1 6 1046 -5817 14040 192 28 14 chr1 207836839 207842382 -74351282 + L1PB1 LINE L1 1093 6866 -1 4358 98 14 56 chr1 207842449 207843177 -74350487 - L1PA13 LINE L1 -6 6157 5461 3493 165 29 3 chr1 207843218 207843944 -74349720 + L1P LINE L1 4588 5332 -814 1160 153 0 0 chr1 207843953 207844149 -74349515 + L1PBa LINE L1 5 200 -6663 1898 118 16 22 chr1 207844149 207844464 -74349200 + L1PBa LINE L1 634 946 -5917 694 115 57 8 chr1 207844458 207844580 -74349084 + L1PB1 LINE L1 5663 5790 -361 * 231 218 0 0 chr1 207844591 207844646 -74349018 + (TA)n Simple_repeat Simple_repeat 2 56 0 2453 99 6 3 chr1 207844684 207845036 -74348628 + L1PB1 LINE L1 5791 6143 -8 331 136 0 0 chr1 207845036 207845095 -74348569 + L1P LINE L1 5321 5379 -784 * 1608 227 46 65 chr1 207845093 207845282 -74348382 + L1M4 LINE L1 2384 2575 -3571 1601 169 47 11 chr1 207845282 207845561 -74348103 + AluSx SINE Alu 1 289 -23 1608 227 46 65 chr1 207845561 207846172 -74347492 + L1M4 LINE L1 2575 3169 -2977 24283 103 18 13 chr1 207846179 207849997 -74343667 + L1P LINE L1 11 3846 -2300 13532 27 2 0 chr1 207849994 207851672 -74341992 - L1PA4 LINE L1 -949 5197 3516 * 7204 47 2 0 chr1 207851673 207852636 -74341028 + L1PA4 LINE L1 5191 6155 0 776 243 47 4 chr1 207852638 207852914 -74340750 + L1M4 LINE L1 3151 3438 -2708 557 121 12 0 chr1 207852915 207852998 -74340666 + AluSg/x SINE Alu 187 270 -40 11522 147 22 24 chr1 207853020 207856199 -74337465 + L1P3 LINE L1 10 3201 -3260 6363 68 17 3 chr1 207856198 207857557 -74336107 + L1PA7 LINE L1 4761 6134 -20 * 396 0 0 0 chr1 207857557 207857601 -74336063 + (TG)n Simple_repeat Simple_repeat 2 45 0 1414 213 27 15 chr1 207857602 207857940 -74335724 + L1ME LINE L1 5464 5805 -361 1137 328 112 38 chr1 207859021 207859425 -74334239 + L2 LINE L2 1560 1933 -1381 692 242 55 35 chr1 207859425 207859681 -74333983 + MIR SINE MIR 2 262 0 1137 328 112 38 chr1 207859681 207860582 -74333082 + L2 LINE L2 1933 2961 -353 222 37 0 0 chr1 207860850 207860877 -74332787 + (TA)n Simple_repeat Simple_repeat 2 28 0 360 132 100 61 chr1 207860911 207861042 -74332622 + LTR37A LTR ERV1 308 426 0 335 270 118 46 chr1 207861043 207861195 -74332469 - MIR SINE MIR -93 169 7 336 293 12 0 chr1 207861212 207861294 -74332370 + L2 LINE L2 3175 3257 -15 1571 191 52 33 chr1 207861455 207862010 -74331654 - MLT2A2 LTR ERVL 0 554 1 283 340 39 0 chr1 207862010 207862113 -74331551 + L3 LINE CR1 435 541 -1036 289 221 130 13 chr1 207862206 207862283 -74331381 + L2 LINE L2 3224 3309 -4 414 312 184 37 chr1 207862336 207862743 -74330921 + L2 LINE L2 1949 2415 -899 718 344 34 12 chr1 207862832 207863155 -74330509 + L3 LINE CR1 842 1171 -406 1360 237 28 84 chr1 207863157 207863691 -74329973 + MER34 LTR ERV1 2 503 -39 3785 98 54 39 chr1 207863691 207864281 -74329383 + MER4A LTR ERV1 1 599 -1 1360 237 28 84 chr1 207864281 207864319 -74329345 + MER34 LTR ERV1 503 542 0 223 343 14 0 chr1 207865678 207865751 -74327913 - MIR SINE MIR 0 262 189 637 140 0 53 chr1 207865781 207865895 -74327769 + AluJb SINE Alu 180 287 -25 198 0 0 0 chr1 207865916 207865938 -74327726 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1449 146 38 17 chr1 207865938 207866235 -74327429 + MER61B LTR ERV1 3 396 -28 311 297 9 0 chr1 207866363 207866474 -74327190 + LTR37B LTR ERV1 6 117 -351 506 242 99 24 chr1 207866515 207866767 -74326897 + LTR37B LTR ERV1 198 468 0 429 374 17 17 chr1 207866770 207866944 -74326720 - MIR SINE MIR -76 186 13 485 287 123 40 chr1 207867677 207867977 -74325687 - MER102b DNA MER1_type -16 325 1 275 299 157 23 chr1 207868354 207868418 -74325246 + MIR SINE MIR 1 55 -207 1962 149 3 13 chr1 207868418 207868719 -74324945 - AluJb SINE Alu -14 298 1 275 299 157 23 chr1 207868719 207868871 -74324793 + MIR SINE MIR 55 246 -16 354 113 16 0 chr1 207868929 207868991 -74324673 - MLT1K LTR MaLR -17 571 509 919 235 107 80 chr1 207869746 207870270 -74323394 - MER34 LTR ERV1 -4 538 1 3219 214 58 23 chr1 207870554 207871534 -74322130 - L1ME1 LINE L1 -4 6162 5164 452 249 26 191 chr1 207873039 207873416 -74320248 - L2 LINE L2 0 3272 2958 389 273 45 39 chr1 207873807 207873961 -74319703 - MIR SINE MIR 0 262 108 1962 139 158 13 chr1 207874571 207874945 -74318719 + MSTA LTR MaLR 1 428 0 2093 236 61 4 chr1 207875277 207875786 -74317878 - MER74A LTR ERVL -20 538 1 645 302 0 11 chr1 207876205 207876384 -74317280 + MER5B DNA MER1_type 2 178 0 379 260 48 130 chr1 207877446 207877715 -74315949 - MIR SINE MIR 0 262 16 239 125 161 54 chr1 207877715 207877771 -74315893 - Charlie8 DNA MER1_type -12 2405 2344 1011 319 94 25 chr1 207877774 207878336 -74315328 + L2 LINE L2 2074 2674 -640 1423 245 68 16 chr1 207879504 207879929 -74313735 - MLT1C LTR MaLR 0 467 21 2427 112 31 8 chr1 207879929 207880285 -74313379 + THE1B LTR MaLR 1 364 0 209 256 67 22 chr1 207880317 207880407 -74313257 - MIR SINE MIR -121 141 48 315 285 121 100 chr1 207880683 207881013 -74312651 - L2 LINE L2 -3 3269 2933 325 333 105 38 chr1 207881069 207881336 -74312328 - L2 LINE L2 -475 2839 2555 218 346 125 10 chr1 207881458 207881562 -74312102 + L2 LINE L2 3121 3236 -36 1447 173 42 7 chr1 207882059 207882342 -74311322 - L1MA9 LINE L1 0 6312 6020 197 281 49 49 chr1 207883801 207883887 -74309777 - MER5B DNA MER1_type 0 189 93 2133 110 0 0 chr1 207884044 207884344 -74309320 + AluY SINE Alu 1 300 -11 266 217 50 0 chr1 207934360 207934420 -74259244 + L2 LINE L2 1488 1550 -1764 248 283 40 0 chr1 207934481 207934580 -74259084 - L1ME LINE L1 -383 5738 5636 666 290 162 60 chr1 207935313 207935648 -74258016 + HAL1 LINE L1 74 374 -2133 2168 119 0 25 chr1 207935648 207935966 -74257698 + AluSg SINE Alu 1 310 0 666 290 162 60 chr1 207935966 207936508 -74257156 + HAL1 LINE L1 374 1040 -1467 345 302 86 70 chr1 207936530 207936845 -74256819 - MLT1I LTR MaLR -19 390 71 317 246 18 9 chr1 207936888 207937002 -74256662 + HAL1 LINE L1 1033 1147 -1360 358 143 0 0 chr1 207937002 207937058 -74256606 - MER8 DNA MER2_type 0 239 184 968 80 0 0 chr1 207937162 207937300 -74256364 + L1PBa LINE L1 1672 1809 -5054 5929 35 1 51 chr1 207937491 207938274 -74255390 - L1PA5 LINE L1 -4 6150 5407 11467 210 25 14 chr1 207938274 207939741 -74253923 + L1PBa LINE L1 1795 3244 -3618 2031 124 3 7 chr1 207939741 207940056 -74253608 + AluSx SINE Alu 1 314 0 11467 210 25 14 chr1 207940056 207940942 -74252722 + L1PBa LINE L1 3244 4118 -2744 180 0 0 0 chr1 207940942 207940962 -74252702 + (CA)n Simple_repeat Simple_repeat 1 20 0 11467 210 25 14 chr1 207940962 207942391 -74251273 + L1PBa LINE L1 4118 5673 -1189 5439 82 23 31 chr1 207942391 207943264 -74250400 + SVA Other Other 3 868 -518 11725 98 41 15 chr1 207943435 207945333 -74248331 - L1P3 LINE L1 -4402 2059 1 482 193 50 6 chr1 207945333 207945494 -74248170 - L1 LINE L1 -813 5333 5166 351 293 200 0 chr1 207945535 207945675 -74247989 + MIR SINE MIR 53 220 -42 482 214 174 41 chr1 207945677 207945994 -74247670 + L1ME3 LINE L1 4452 4810 -1336 359 262 128 18 chr1 207946024 207946307 -74247357 + L1ME3 LINE L1 4849 5164 -982 1264 208 94 0 chr1 207946310 207946565 -74247099 + AluJo SINE Alu 1 279 -33 1690 225 98 14 chr1 207946581 207947302 -74246362 + L1ME3 LINE L1 5177 5953 -209 1801 134 122 9 chr1 207947303 207947638 -74246026 - THE1C LTR MaLR -2 373 1 257 148 0 19 chr1 207947638 207947692 -74245972 - THE1C-int LTR MaLR 0 1580 1528 885 180 26 110 chr1 207948100 207948162 -74245502 - MIR SINE MIR -1 261 195 5405 132 25 13 chr1 207948162 207949858 -74243806 - L1PA16 LINE L1 -2 6164 4456 885 180 26 110 chr1 207949858 207950067 -74243597 - MIR SINE MIR -67 195 13 1162 311 49 16 chr1 207950099 207950149 -74243515 - LTR16B LTR ERVL -2 462 415 2281 162 65 2 chr1 207950149 207950550 -74243114 + MSTB LTR MaLR 1 426 0 1162 311 49 16 chr1 207950550 207950946 -74242718 - LTR16B LTR ERVL -49 415 1 318 297 77 0 chr1 207950946 207951037 -74242627 + L2 LINE L2 3216 3313 0 900 193 57 37 chr1 207951502 207951746 -74241918 - MLT1C LTR MaLR -46 421 173 1943 145 53 11 chr1 207951764 207952144 -74241520 - L1MB3 LINE L1 -1 6182 5787 2221 139 26 11 chr1 207952144 207952524 -74241140 - MLT1B LTR MaLR 0 390 5 1108 179 112 26 chr1 207952532 207952845 -74240819 - L1MC4 LINE L1 -250 7792 7453 1837 170 127 12 chr1 207952972 207953390 -74240274 - MLT1C LTR MaLR -1 466 1 191 367 11 22 chr1 207953417 207953507 -74240157 + MIR SINE MIR 148 236 -26 2088 66 35 0 chr1 207953554 207953813 -74239851 - AluY SINE Alu -13 298 31 295 111 0 0 chr1 207953816 207953861 -74239803 + MADE1 DNA Mariner 34 78 -2 556 260 83 11 chr1 207954133 207954314 -74239350 - MIR SINE MIR -38 224 31 374 333 152 36 chr1 207954610 207955111 -74238553 + L2 LINE L2 1527 2085 -1229 627 336 70 50 chr1 207955321 207955866 -74237798 - L2 LINE L2 -338 2976 2421 249 263 53 0 chr1 207955930 207955987 -74237677 - L2 LINE L2 0 3272 3213 338 255 43 11 chr1 207956004 207956098 -74237566 - L2 LINE L2 -963 2351 2255 572 299 128 24 chr1 207956478 207956899 -74236765 + L1ME4a LINE L1 5511 5975 -146 875 300 31 32 chr1 207956987 207957488 -74236176 + MLT1K LTR MaLR 26 585 -3 1332 78 34 6 chr1 207958430 207958609 -74235055 - AluSq SINE Alu -10 303 120 2365 211 78 88 chr1 207958718 207959787 -74233877 - HAL1 LINE L1 -477 2030 973 325 149 83 24 chr1 207959811 207959979 -74233685 + (TA)n Simple_repeat Simple_repeat 2 179 0 226 177 18 26 chr1 207959992 207960105 -74233559 + (TA)n Simple_repeat Simple_repeat 1 112 0 924 263 201 45 chr1 207960119 207960940 -74232724 - HAL1 LINE L1 -1557 950 2 219 348 96 9 chr1 207961106 207961221 -74232443 + L2 LINE L2 3140 3264 -8 385 302 111 23 chr1 207962967 207963139 -74230525 + MIR SINE MIR 60 246 -16 199 333 56 50 chr1 207963410 207963608 -74230056 + MIR SINE MIR 8 206 -56 1272 159 5 24 chr1 207963614 207963821 -74229843 + AluJb SINE Alu 86 288 -24 252 300 29 50 chr1 207963981 207964121 -74229543 + L3 LINE CR1 735 871 -706 523 284 117 38 chr1 207964206 207964445 -74229219 + L3 LINE CR1 1029 1286 -291 768 240 62 5 chr1 207964610 207964802 -74228862 + MER63A DNA MER1_type 1 203 -7 188 351 91 0 chr1 207964810 207964887 -74228777 - L2 LINE L2 -49 3223 3140 185 248 120 60 chr1 207964966 207965099 -74228565 - L2 LINE L2 -275 2997 2857 1694 235 62 73 chr1 207965341 207966055 -74227609 - MER72 LTR ERV1 -16 706 1 256 285 123 15 chr1 207966249 207966379 -74227285 - MER5A DNA MER1_type -34 155 12 576 261 119 31 chr1 207966386 207966646 -74227018 - L2 LINE L2 -36 3277 2995 526 298 189 22 chr1 207966722 207967330 -74226334 - L2 LINE L2 -955 2359 1636 1803 187 0 3 chr1 207967330 207967629 -74226035 + AluJb SINE Alu 1 298 -14 526 298 189 22 chr1 207967629 207967665 -74225999 - L2 LINE L2 -1678 1636 1607 6486 60 2 2 chr1 207968127 207969269 -74224395 - L1PA7 LINE L1 -13 6141 4980 14137 116 43 111 chr1 207969369 207972436 -74221228 + L1PA8 LINE L1 3142 6169 -3 190 331 124 41 chr1 207973366 207973511 -74220153 - MIR3 SINE MIR -51 157 1 905 270 143 16 chr1 207973549 207974092 -74219572 + L2 LINE L2 2684 3313 0 990 158 13 0 chr1 207975779 207975937 -74217727 - AluSg/x SINE Alu -6 306 147 249 229 118 1 chr1 207975947 207976025 -74217639 + MIR3 SINE MIR 99 188 -20 234 255 71 50 chr1 207976039 207976180 -74217484 - MER103 DNA DNA -21 145 2 734 192 0 0 chr1 207978951 207979076 -74214588 - AluJb SINE Alu -187 125 1 2410 95 0 0 chr1 207979250 207979555 -74214109 - AluSq SINE Alu -8 305 1 259 228 9 97 chr1 207979979 207980093 -74213571 - MLT1H LTR MaLR -12 537 434 2236 323 73 21 chr1 207981503 207983427 -74210237 - HERV16 LTR ERVL -2510 2486 397 366 318 47 0 chr1 207983564 207983712 -74209952 - HERV16 LTR ERVL -4802 194 40 1115 261 74 51 chr1 207983723 207984156 -74209508 - LTR16A1 LTR ERVL 0 457 15 441 263 18 53 chr1 207984171 207984197 -74209467 - MIR SINE MIR -16 246 221 1923 132 29 4 chr1 207984197 207984477 -74209187 - AluSx SINE Alu -4 308 22 441 263 18 53 chr1 207984477 207984621 -74209043 - MIR SINE MIR -41 221 82 306 303 131 34 chr1 207985029 207985204 -74208460 - MIR SINE MIR -39 223 32 331 241 111 0 chr1 207985795 207985903 -74207761 + MIR SINE MIR 81 200 -62 2564 263 59 10 chr1 207986435 207987215 -74206449 - L1ME3A LINE L1 -45 6125 5308 884 266 72 29 chr1 207987782 207988223 -74205441 - LTR1B LTR ERV1 -328 498 53 1481 125 5 0 chr1 207988274 207988498 -74205166 + L1PBa LINE L1 1 225 -6638 9616 121 29 50 chr1 207988600 207990186 -74203478 - THE1C-int LTR MaLR -28 1552 1 2272 124 65 11 chr1 207990186 207990542 -74203122 - THE1C LTR MaLR 0 375 1 787 209 68 11 chr1 207990542 207990733 -74202931 + L1ME3 LINE L1 5948 6149 -13 238 303 0 15 chr1 207990760 207990826 -74202838 + MIR SINE MIR 195 259 -3 * 265 314 46 62 chr1 207990800 207990994 -74202670 - MIR SINE MIR -49 213 23 258 32 0 0 chr1 207991033 207991064 -74202600 + (TC)n Simple_repeat Simple_repeat 2 32 0 31 0 0 0 chr1 207991064 207991095 -74202569 + AT_rich Low_complexity Low_complexity 1 31 0 5194 162 53 20 chr1 207991103 207992113 -74201551 - L1MA6 LINE L1 -2 6298 5255 2133 128 3 13 chr1 207992808 207993113 -74200551 + AluSx SINE Alu 1 302 -10 772 296 149 18 chr1 207993138 207993533 -74200131 - L2 LINE L2 -34 3279 2833 2144 64 50 3 chr1 207993543 207993826 -74199838 - AluY SINE Alu -15 296 1 299 302 78 39 chr1 207994910 207995089 -74198575 - MIR SINE MIR -1 261 76 2156 146 0 0 chr1 207995825 207996133 -74197531 - AluSx SINE Alu -4 308 1 461 293 66 12 chr1 207996368 207996581 -74197083 + MIR SINE MIR 3 226 -36 2061 133 7 0 chr1 207996768 207997070 -74196594 + AluSq SINE Alu 2 305 -8 196 286 0 0 chr1 207997309 207997351 -74196313 - L2 LINE L2 -11 3261 3220 1139 266 71 25 chr1 207997402 207997767 -74195897 + L1MCb LINE L1 1 382 -5663 10410 159 45 41 chr1 207998123 207998180 -74195484 + L1P3 LINE L1 13 68 -6393 2043 141 20 3 chr1 207998180 207998486 -74195178 + AluSq SINE Alu 1 311 -2 10410 159 45 41 chr1 207998486 208000910 -74192754 + L1P3 LINE L1 68 2585 -3876 1672 59 0 5 chr1 208000910 208001102 -74192562 + L1PA4 LINE L1 5951 6152 -3 10410 159 45 41 chr1 208001102 208001929 -74191735 + L1P3 LINE L1 2585 3407 -3054 2471 92 0 3 chr1 208001915 208002243 -74191421 + L1PA7 LINE L1 5808 6134 -20 * 3909 111 37 61 chr1 208002753 208003462 -74190202 + L1PA13 LINE L1 5466 6157 -6 15497 190 24 8 chr1 208003529 208009072 -74184592 - L1PB1 LINE L1 -1 6866 1093 4007 221 54 10 chr1 208009075 208010072 -74183592 - L1PB1 LINE L1 -5817 1046 6 6029 253 63 40 chr1 208010121 208011021 -74182643 - L1MEc LINE L1 -3958 2438 1561 2366 86 0 3 chr1 208011021 208011322 -74182342 - AluY SINE Alu -11 300 1 6029 253 63 40 chr1 208011322 208011572 -74182092 - L1MEc LINE L1 -4835 1561 1318 261 0 0 0 chr1 208011572 208011601 -74182063 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 6029 253 63 40 chr1 208011601 208012798 -74180866 - L1MEc LINE L1 -5078 1318 35 2603 176 21 0 chr1 208013244 208013665 -74179999 + MSTB1 LTR MaLR 1 430 -2 26 64 0 0 chr1 208014074 208014121 -74179543 + AT_rich Low_complexity Low_complexity 1 47 0 3825 165 29 3 chr1 208014782 208015510 -74178154 + L1P LINE L1 4588 5334 -812 1250 153 0 0 chr1 208015517 208015713 -74177951 + L1PBa LINE L1 5 200 -6663 2027 118 16 22 chr1 208015713 208016028 -74177636 + L1PBa LINE L1 634 946 -5917 758 115 57 8 chr1 208016022 208016144 -74177520 + L1PB1 LINE L1 5663 5790 -361 * 231 218 0 0 chr1 208016155 208016210 -74177454 + (TA)n Simple_repeat Simple_repeat 2 56 0 2638 99 6 3 chr1 208016248 208016600 -74177064 + L1PB1 LINE L1 5791 6143 -8 341 138 0 0 chr1 208016600 208016658 -74177006 + L1P LINE L1 5321 5378 -783 * 1913 229 46 65 chr1 208016657 208016846 -74176818 + L1M4 LINE L1 2384 2575 -3571 1592 169 47 11 chr1 208016846 208017125 -74176539 + AluSx SINE Alu 1 289 -23 1913 229 46 65 chr1 208017125 208017736 -74175928 + L1M4 LINE L1 2575 3169 -2977 26194 106 13 13 chr1 208017743 208021578 -74172086 + L1P LINE L1 11 3846 -2300 14442 29 2 0 chr1 208021575 208023253 -74170411 - L1PA4 LINE L1 -949 5197 3516 * 7528 53 3 1 chr1 208023254 208024217 -74169447 + L1PA4 LINE L1 5191 6155 0 899 243 47 4 chr1 208024219 208024495 -74169169 + L1M4 LINE L1 3151 3438 -2708 588 115 94 0 chr1 208024496 208024592 -74169072 + AluSg/x SINE Alu 189 293 -19 12454 161 19 114 chr1 208024596 208027777 -74165887 + L1P LINE L1 7 2886 -3260 6827 68 17 3 chr1 208027776 208029135 -74164529 + L1PA7 LINE L1 4761 6134 -20 * 360 0 0 0 chr1 208029135 208029175 -74164489 + (TG)n Simple_repeat Simple_repeat 2 41 0 1561 213 27 15 chr1 208029176 208029514 -74164150 + L1ME LINE L1 5464 5805 -361 842 19 0 38 chr1 208030861 208030967 -74162697 + SVA Other Other 1285 1386 0 3860 133 22 9 chr1 208030973 208031602 -74162062 - L1MA5A LINE L1 -346 5951 5315 16601 95 20 15 chr1 208031594 208034886 -74158778 - L1PA7 LINE L1 -4 6465 3157 5771 132 7 1 chr1 208034905 208035808 -74157856 - L1PA7 LINE L1 -5546 915 8 2204 107 0 7 chr1 208035834 208036133 -74157531 - AluY SINE Alu -14 297 1 195 281 49 49 chr1 208036290 208036376 -74157288 + MER5B DNA MER1_type 93 189 0 1387 173 42 7 chr1 208037834 208038117 -74155547 + L1MA9 LINE L1 6020 6312 0 202 282 0 42 chr1 208038529 208038600 -74155064 + L2 LINE L2 2466 2533 -781 228 346 125 10 chr1 208038614 208038718 -74154946 - L2 LINE L2 -36 3236 3121 310 333 105 38 chr1 208038840 208039107 -74154557 + L2 LINE L2 2555 2839 -475 318 303 112 91 chr1 208039163 208039493 -74154171 + L2 LINE L2 2933 3269 -3 215 256 67 22 chr1 208039769 208039859 -74153805 + MIR SINE MIR 48 141 -121 2394 112 31 8 chr1 208039891 208040247 -74153417 - THE1B LTR MaLR 0 364 1 1272 245 68 16 chr1 208040247 208040672 -74152992 + MLT1C LTR MaLR 21 467 0 993 317 96 25 chr1 208041837 208042398 -74151266 - L2 LINE L2 -640 2674 2074 239 125 161 54 chr1 208042401 208042457 -74151207 + Charlie8 DNA MER1_type 2344 2405 -12 386 261 48 127 chr1 208042457 208042725 -74150939 + MIR SINE MIR 16 262 0 632 298 6 11 chr1 208043787 208043965 -74149699 - MER5B DNA MER1_type 0 178 2 2093 236 61 4 chr1 208044384 208044893 -74148771 + MER74A LTR ERVL 1 538 -20 1923 139 161 13 chr1 208045225 208045598 -74148066 - MSTA LTR MaLR 0 428 1 389 273 45 39 chr1 208046208 208046362 -74147302 + MIR SINE MIR 108 262 0 452 249 26 191 chr1 208046753 208047130 -74146534 + L2 LINE L2 2958 3272 0 3124 216 59 23 chr1 208048635 208049614 -74144050 + L1ME1 LINE L1 5164 6162 -4 919 235 107 80 chr1 208049898 208050422 -74143242 + MER34 LTR ERV1 1 538 -4 354 113 16 0 chr1 208051181 208051243 -74142421 + MLT1K LTR MaLR 509 571 -17 275 299 157 23 chr1 208051301 208051453 -74142211 - MIR SINE MIR -16 246 55 1962 149 3 13 chr1 208051453 208051754 -74141910 + AluJb SINE Alu 1 298 -14 275 299 157 23 chr1 208051754 208051818 -74141846 - MIR SINE MIR -207 55 1 485 287 123 40 chr1 208052195 208052495 -74141169 + MER102b DNA MER1_type 1 325 -16 429 374 17 17 chr1 208053228 208053402 -74140262 + MIR SINE MIR 13 186 -76 506 242 99 24 chr1 208053405 208053657 -74140007 - LTR37B LTR ERV1 0 468 198 311 297 9 0 chr1 208053698 208053809 -74139855 - LTR37B LTR ERV1 -351 117 6 1449 146 38 17 chr1 208053937 208054234 -74139430 - MER61B LTR ERV1 -28 396 3 198 0 0 0 chr1 208054234 208054256 -74139408 + (TGG)n Simple_repeat Simple_repeat 1 22 0 637 140 0 53 chr1 208054277 208054391 -74139273 - AluJb SINE Alu -25 287 180 223 343 14 0 chr1 208054421 208054494 -74139170 + MIR SINE MIR 189 262 0 1383 236 28 84 chr1 208055853 208055891 -74137773 - MER34 LTR ERV1 0 542 503 3785 98 54 39 chr1 208055891 208056481 -74137183 - MER4A LTR ERV1 -1 599 1 1383 236 28 84 chr1 208056481 208057015 -74136649 - MER34 LTR ERV1 -39 503 2 718 344 34 12 chr1 208057017 208057340 -74136324 - L3 LINE CR1 -406 1171 842 414 312 184 37 chr1 208057429 208057836 -74135828 - L2 LINE L2 -899 2415 1949 289 221 130 13 chr1 208057889 208057966 -74135698 - L2 LINE L2 -4 3309 3224 283 340 39 0 chr1 208058059 208058162 -74135502 - L3 LINE CR1 -1036 541 435 1571 191 52 33 chr1 208058162 208058717 -74134947 + MLT2A2 LTR ERVL 1 554 0 336 293 12 0 chr1 208058878 208058960 -74134704 - L2 LINE L2 -15 3257 3175 335 270 118 46 chr1 208058977 208059129 -74134535 + MIR SINE MIR 7 169 -93 360 132 100 61 chr1 208059130 208059261 -74134403 - LTR37A LTR ERV1 0 457 308 222 37 0 0 chr1 208059295 208059322 -74134342 + (TA)n Simple_repeat Simple_repeat 1 27 0 1152 335 121 22 chr1 208059590 208060491 -74133173 - L2 LINE L2 -353 2961 1922 692 242 55 35 chr1 208060491 208060747 -74132917 - MIR SINE MIR 0 262 2 1152 335 121 22 chr1 208060747 208060984 -74132680 - L2 LINE L2 -1392 1922 1710 24 0 0 0 chr1 208061026 208061050 -74132614 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 208061091 208061115 -74132549 + AT_rich Low_complexity Low_complexity 1 24 0 1457 192 70 24 chr1 208061271 208061687 -74131977 + HAL1 LINE L1 2038 2472 -35 424 344 189 26 chr1 208062029 208062532 -74131132 + L3 LINE CR1 249 833 -744 753 283 21 0 chr1 208062870 208063061 -74130603 + MIR SINE MIR 3 197 -65 198 71 0 0 chr1 208064245 208064273 -74129391 + (A)n Simple_repeat Simple_repeat 1 28 0 527 114 0 0 chr1 208064489 208064568 -74129096 - L1PA15 LINE L1 -265 5900 5822 972 109 58 46 chr1 208064571 208064745 -74128919 + L1PA15 LINE L1 5989 6164 -1 1402 193 77 72 chr1 208064843 208065191 -74128473 + Charlie1b DNA MER1_type 1 354 -2407 2412 66 0 0 chr1 208065191 208065494 -74128170 - AluY SINE Alu -8 303 1 1402 193 77 72 chr1 208065494 208065662 -74128002 + Charlie1b DNA MER1_type 354 520 -3 21 71 0 0 chr1 208066428 208066470 -74127194 + AT_rich Low_complexity Low_complexity 1 42 0 2994 185 56 35 chr1 208066569 208067336 -74126328 - L1MB7 LINE L1 -8 6176 5394 333 324 160 33 chr1 208067343 208067862 -74125802 - L1MEd LINE L1 -3343 2786 2202 21 36 0 0 chr1 208067864 208067892 -74125772 + AT_rich Low_complexity Low_complexity 1 28 0 1860 123 32 7 chr1 208068533 208068817 -74124847 - AluSx SINE Alu -21 291 1 337 320 113 30 chr1 208068975 208069178 -74124486 - HAL1b LINE L1 -731 617 398 367 297 103 0 chr1 208069459 208069654 -74124010 - HsTC2 DNA Tc2 -980 918 704 248 314 58 25 chr1 208069694 208069815 -74123849 - HsTC2 DNA Tc2 -1292 606 482 2897 175 19 7 chr1 208070099 208070687 -74122977 - L1PA13 LINE L1 -3367 2779 2185 13387 167 39 52 chr1 208070687 208070897 -74122767 + L1PA13 LINE L1 2782 2993 -3170 2559 75 0 0 chr1 208070897 208071203 -74122461 - AluY SINE Alu -5 306 1 13387 167 39 52 chr1 208071203 208074346 -74119318 + L1PA13 LINE L1 2993 6144 -19 288 307 80 13 chr1 208074431 208074656 -74119008 - L1ME LINE L1 -409 5712 5473 2459 114 19 3 chr1 208074670 208075039 -74118625 + THE1C LTR MaLR 1 375 0 9001 130 13 68 chr1 208075039 208076705 -74116959 + THE1C-int LTR MaLR 1 1574 -6 2159 135 41 11 chr1 208076709 208077073 -74116591 + THE1C LTR MaLR 1 375 0 344 285 64 9 chr1 208077369 208077633 -74116031 - L1MEd LINE L1 -4862 1257 1054 202 193 18 35 chr1 208077872 208077929 -74115735 + T-rich Low_complexity Low_complexity 3 58 0 304 289 58 29 chr1 208080768 208080872 -74112792 - L2 LINE L2 -6 3266 3160 6031 75 10 12 chr1 208081088 208082041 -74111623 - L1PA4 LINE L1 -3 6152 5382 335 64 0 0 chr1 208082044 208082091 -74111573 - L1MA5 LINE L1 -183 6117 6071 4981 64 39 8 chr1 208082093 208082730 -74110934 + SVA Other Other 730 1386 0 28 0 0 0 chr1 208082801 208082829 -74110835 + AT_rich Low_complexity Low_complexity 1 28 0 5762 124 30 32 chr1 208082829 208084047 -74109617 + L1PB1 LINE L1 4942 6151 0 186 43 0 0 chr1 208084171 208084194 -74109470 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 902 305 82 78 chr1 208084466 208085944 -74107720 + L1MEc LINE L1 25 1511 -4885 1788 179 13 0 chr1 208085944 208086252 -74107412 + AluJb SINE Alu 1 312 0 902 305 82 78 chr1 208086252 208086391 -74107273 + L1MEc LINE L1 1511 1648 -4748 2100 117 21 0 chr1 208086719 208087009 -74106655 - AluSg SINE Alu -14 296 1 345 351 35 23 chr1 208087694 208087865 -74105799 - MIR3 SINE MIR 0 208 36 5182 152 40 24 chr1 208088040 208089277 -74104387 - L1MA7 LINE L1 0 6291 5039 2214 101 3 3 chr1 208089292 208089588 -74104076 + AluSc SINE Alu 1 296 -13 1370 173 13 0 chr1 208089590 208089816 -74103848 + MER46A DNA MER2_type 8 236 0 4109 173 32 17 chr1 208089816 208090720 -74102944 - L1MA7 LINE L1 -1106 5040 4123 3369 179 83 10 chr1 208091106 208091926 -74101738 - Charlie5 DNA MER1_type -113 2499 1620 543 70 0 0 chr1 208092221 208092292 -74101372 + Alu SINE Alu 4 74 -236 1173 115 0 6 chr1 208092293 208092467 -74101197 - AluY SINE Alu -11 300 128 226 184 0 0 chr1 208194177 208194215 -73999449 - MER34 LTR ERV1 0 542 505 2436 129 28 17 chr1 208194215 208194727 -73998937 - MER4A LTR ERV1 -1 663 79 254 79 26 0 chr1 208194827 208194865 -73998799 - MER4A LTR ERV1 -625 39 1 1423 242 31 81 chr1 208194878 208195399 -73998265 - MER34 LTR ERV1 -46 496 2 698 344 34 12 chr1 208195401 208195724 -73997940 - L3 LINE CR1 -406 1171 842 401 295 192 44 chr1 208195813 208196220 -73997444 - L2 LINE L2 -899 2415 1949 284 221 130 13 chr1 208196273 208196350 -73997314 - L2 LINE L2 -4 3309 3224 274 340 39 0 chr1 208196443 208196546 -73997118 - L3 LINE CR1 -1036 541 435 1716 240 61 63 chr1 208196546 208197101 -73996563 + MLT2B3 LTR ERVL 1 554 0 333 293 12 0 chr1 208197262 208197344 -73996320 - L2 LINE L2 -15 3257 3175 320 270 118 46 chr1 208197361 208197513 -73996151 + MIR SINE MIR 7 169 -93 393 132 167 62 chr1 208197514 208197658 -73996006 - LTR37A LTR ERV1 0 426 268 222 37 0 0 chr1 208197679 208197706 -73995958 + (TA)n Simple_repeat Simple_repeat 1 27 0 780 348 111 21 chr1 208197974 208198797 -73994867 - L2 LINE L2 -353 2961 2065 798 184 48 0 chr1 208199014 208199161 -73994503 - MLT1A1 LTR MaLR -8 357 204 252 0 0 0 chr1 208199169 208199197 -73994467 + (T)n Simple_repeat Simple_repeat 1 28 0 269 89 44 0 chr1 208199202 208199247 -73994417 - L1MB7 LINE L1 0 6184 6138 3433 31 5 0 chr1 208199263 208199647 -73994017 - L1PA4 LINE L1 0 6155 5770 1317 214 65 56 chr1 208199716 208200072 -73993592 + MLT1A1 LTR MaLR 6 364 -1 806 166 7 7 chr1 208200072 208200211 -73993453 - MLT1A1 LTR MaLR -226 139 1 575 271 173 28 chr1 208200499 208200754 -73992910 + L3 LINE CR1 1068 1359 -218 567 291 16 42 chr1 208201499 208201688 -73991976 + MER5A DNA MER1_type 6 189 0 387 290 28 9 chr1 208201821 208201928 -73991736 + MER81 DNA DNA 2 110 -4 1339 176 39 12 chr1 208202481 208202737 -73990927 + L1MA9 LINE L1 6050 6312 0 198 282 0 42 chr1 208203149 208203220 -73990444 + L2 LINE L2 2466 2533 -781 220 346 125 10 chr1 208203234 208203338 -73990326 - L2 LINE L2 -36 3236 3121 306 333 105 38 chr1 208203460 208203727 -73989937 + L2 LINE L2 2555 2839 -475 309 285 121 100 chr1 208203783 208204113 -73989551 + L2 LINE L2 2933 3269 -3 205 256 67 22 chr1 208204389 208204479 -73989185 + MIR SINE MIR 48 141 -121 2567 112 31 8 chr1 208204511 208204867 -73988797 - THE1B LTR MaLR 0 364 1 1443 245 68 16 chr1 208204867 208205292 -73988372 + MLT1C LTR MaLR 21 467 0 990 319 94 25 chr1 208206461 208207023 -73986641 - L2 LINE L2 -640 2674 2074 263 136 153 51 chr1 208207023 208207082 -73986582 + Charlie8 DNA MER1_type 2341 2405 -12 363 260 48 130 chr1 208207082 208207351 -73986313 + MIR SINE MIR 16 262 0 633 302 0 11 chr1 208208413 208208592 -73985072 - MER5B DNA MER1_type 0 178 2 2288 236 61 4 chr1 208209011 208209520 -73984144 + MER74A LTR ERVL 1 538 -20 2137 139 158 13 chr1 208209852 208210226 -73983438 - MSTA LTR MaLR 0 428 1 445 224 67 30 chr1 208210649 208210783 -73982881 + MLT1J2 LTR MaLR 7 145 -305 2667 125 42 1 chr1 208210843 208211390 -73982274 + L1PB4 LINE L1 5106 5673 -483 237 83 0 0 chr1 208211390 208211426 -73982238 + (TG)n Simple_repeat Simple_repeat 2 37 0 227 184 0 20 chr1 208211426 208211475 -73982189 + L1MC4 LINE L1 6652 6699 -1343 2500 120 44 2 chr1 208211489 208211872 -73981792 + L1PB4 LINE L1 5640 6039 -117 26022 142 16 13 chr1 208211875 208218381 -73975283 + L1PA8A LINE L1 6 6446 0 679 140 0 53 chr1 208218688 208218802 -73974862 + AluJb SINE Alu 180 287 -25 189 0 0 0 chr1 208218824 208218845 -73974819 + (CCA)n Simple_repeat Simple_repeat 1 21 0 1556 146 38 17 chr1 208218845 208219142 -73974522 + MER61B LTR ERV1 3 396 -28 360 298 9 0 chr1 208219267 208219381 -73974283 + LTR37B LTR ERV1 3 117 -351 616 238 95 20 chr1 208219422 208219674 -73973990 + LTR37B LTR ERV1 198 468 0 419 374 17 17 chr1 208219677 208219851 -73973813 - MIR SINE MIR -76 186 13 586 283 123 40 chr1 208220584 208220884 -73972780 - MER102b DNA MER1_type -16 325 1 252 304 157 23 chr1 208221261 208221325 -73972339 + MIR SINE MIR 1 55 -207 1951 149 3 13 chr1 208221325 208221626 -73972038 - AluJb SINE Alu -14 298 1 252 304 157 23 chr1 208221626 208221778 -73971886 + MIR SINE MIR 55 246 -16 384 113 16 0 chr1 208221836 208221898 -73971766 - MLT1K LTR MaLR -17 571 509 1136 235 107 80 chr1 208222653 208223177 -73970487 - MER34 LTR ERV1 -4 538 1 3613 214 58 23 chr1 208223461 208224441 -73969223 - L1ME1 LINE L1 -4 6162 5164 438 249 26 191 chr1 208225946 208226323 -73967341 - L2 LINE L2 0 3272 2958 263 261 11 45 chr1 208226714 208226802 -73966862 - MIR SINE MIR 0 262 178 3252 100 23 13 chr1 208226817 208227288 -73966376 + L1P LINE L1 3965 4440 -1706 194 281 49 49 chr1 208228880 208228966 -73964698 - MER5B DNA MER1_type 0 189 93 2245 110 0 0 chr1 208229123 208229423 -73964241 + AluY SINE Alu 1 300 -11 6527 111 7 1 chr1 208229449 208230352 -73963312 + L1PA7 LINE L1 8 915 -5546 18420 101 29 7 chr1 208230361 208233630 -73960034 + L1PA7 LINE L1 3147 6456 -13 582 273 198 31 chr1 208234092 208234128 -73959536 + L2 LINE L2 1607 1636 -1678 1773 187 0 3 chr1 208234128 208234427 -73959237 - AluJb SINE Alu -14 298 1 582 273 198 31 chr1 208234427 208235035 -73958629 + L2 LINE L2 1636 2359 -955 564 261 119 31 chr1 208235111 208235371 -73958293 + L2 LINE L2 2995 3277 -36 247 292 123 15 chr1 208235378 208235508 -73958156 + MER5A DNA MER1_type 12 155 -34 1962 228 67 78 chr1 208235702 208236416 -73957248 + MER72 LTR ERV1 1 706 -16 183 233 120 60 chr1 208236658 208236791 -73956873 + L2 LINE L2 2857 2997 -275 188 338 91 0 chr1 208236870 208236947 -73956717 + L2 LINE L2 3140 3223 -49 843 240 62 5 chr1 208236955 208237147 -73956517 - MER63A DNA MER1_type -7 203 1 519 284 117 38 chr1 208237313 208237552 -73956112 - L3 LINE CR1 -291 1286 1029 1836 138 7 3 chr1 208237662 208237951 -73955713 + L1PA4 LINE L1 5866 6155 0 243 0 0 0 chr1 208238020 208238047 -73955617 + (A)n Simple_repeat Simple_repeat 1 27 0 849 184 43 6 chr1 208238047 208238210 -73955454 + MLT1A1 LTR MaLR 197 365 0 627 197 36 7 chr1 208238332 208238469 -73955195 - L1MB8 LINE L1 -3 6175 6035 543 311 160 0 chr1 208238700 208238912 -73954752 + MIR SINE MIR 2 247 -15 352 287 57 51 chr1 208239072 208239229 -73954435 - MIR3 SINE MIR -10 198 41 220 266 47 31 chr1 208239242 208239306 -73954358 + L2 LINE L2 3249 3313 0 293 349 90 76 chr1 208239343 208239698 -73953966 + L2 LINE L2 2880 3239 -33 830 271 64 76 chr1 208239728 208239899 -73953765 + MLT1J LTR MaLR 3 175 -336 5129 90 6 16 chr1 208239899 208240566 -73953098 + PABL_A LTR ERV1 1 660 0 830 271 64 76 chr1 208240566 208240878 -73952786 + MLT1J LTR MaLR 175 480 -31 1932 209 41 57 chr1 208241539 208242052 -73951612 - MLT1D LTR MaLR 0 505 1 1266 222 59 47 chr1 208242121 208242742 -73950922 - L1M4 LINE L1 -1149 4997 3587 2700 89 0 3 chr1 208243462 208243810 -73949854 + L1PB1 LINE L1 5800 6146 -5 197 211 0 122 chr1 208243825 208243915 -73949749 - L2 LINE L2 -5 3267 3189 237 246 33 0 chr1 208244053 208244114 -73949550 + L2 LINE L2 3251 3313 0 4815 249 106 48 chr1 208244627 208244897 -73948767 + L1MEc LINE L1 34 287 -5928 216 0 0 0 chr1 208244897 208244921 -73948743 + (GGAGA)n Simple_repeat Simple_repeat 4 27 0 4815 249 106 48 chr1 208244921 208246029 -73947635 + L1MEc LINE L1 287 1329 -4886 1472 225 91 73 chr1 208246029 208246523 -73947141 + MLT1D LTR MaLR 1 503 -2 4815 249 106 48 chr1 208246523 208248838 -73944826 + L1MEc LINE L1 1329 3924 -2291 * 10636 162 52 58 chr1 208248821 208251188 -73942476 + L1M4c LINE L1 5 2356 -4028 633 189 105 92 chr1 208251292 208251598 -73942066 + L1M4c LINE L1 2426 2735 -3647 1952 249 7 31 chr1 208251600 208252276 -73941388 + L1M4c LINE L1 3092 3751 -2631 9502 164 81 82 chr1 208252276 208256698 -73936966 + HERV9 LTR ERV1 504 2438 0 5033 177 51 8 chr1 208256730 208257780 -73935884 + L1MB3 LINE L1 3074 4169 -1977 614 91 45 0 chr1 208257781 208257891 -73935773 + L1M LINE L1 5254 5368 -937 8834 146 146 8 chr1 208257902 208259511 -73934153 + L1MA6 LINE L1 1 1832 -5031 5755 154 20 34 chr1 208259494 208260151 -73933513 + L1MA6 LINE L1 5422 6086 -930 * 1904 148 3 13 chr1 208260151 208260449 -73933215 + AluSx SINE Alu 1 295 -17 5755 154 20 34 chr1 208260449 208261380 -73932284 + L1MA6 LINE L1 6086 7010 -6 4839 182 36 18 chr1 208261386 208262253 -73931411 + L1MB3 LINE L1 4457 5307 -876 804 145 0 179 chr1 208262253 208262488 -73931176 - 7SK RNA RNA 0 193 1 4839 182 36 18 chr1 208262488 208263298 -73930366 + L1MB3 LINE L1 5307 6180 -3 601 280 27 0 chr1 208263303 208263489 -73930175 + L1M4 LINE L1 3842 4032 -2114 376 140 66 110 chr1 208263869 208264005 -73929659 - L1MC4 LINE L1 0 8042 7913 2154 96 0 59 chr1 208264030 208264353 -73929311 - AluSc SINE Alu -1 308 5 298 257 119 0 chr1 208264355 208264464 -73929200 - L1MC4 LINE L1 -871 7171 7050 * 338 274 93 75 chr1 208264457 208264866 -73928798 - L1ME LINE L1 -4706 1376 1045 1549 195 10 14 chr1 208264866 208265163 -73928501 - AluJb SINE Alu -16 296 1 338 274 93 75 chr1 208265163 208265588 -73928076 - L1ME LINE L1 -5037 1045 629 2192 138 28 0 chr1 208266010 208266336 -73927328 - L1PA15 LINE L1 -254 5911 5577 1912 153 7 3 chr1 208266336 208266637 -73927027 + AluSx SINE Alu 1 302 -10 770 299 9 14 chr1 208267139 208267350 -73926314 + MER63A DNA MER1_type 1 210 0 199 327 0 0 chr1 208267799 208267854 -73925810 - L3 LINE CR1 -11 1566 1512 1290 149 0 0 chr1 208268360 208268605 -73925059 - AluSg/x SINE Alu 0 339 95 412 109 0 0 chr1 208268605 208268660 -73925004 - Alu SINE Alu -254 56 2 185 229 115 16 chr1 208269593 208269654 -73924010 + MIR SINE MIR 125 191 -71 521 232 107 30 chr1 208269676 208269844 -73923820 + MLT1J2 LTR MaLR 2 182 -268 513 357 70 48 chr1 208271204 208271518 -73922146 + L2 LINE L2 2951 3271 -1 382 303 61 53 chr1 208271522 208271601 -73922063 - MIR SINE MIR 0 262 185 258 32 0 0 chr1 208271601 208271632 -73922032 + (TG)n Simple_repeat Simple_repeat 2 32 0 382 303 61 53 chr1 208271632 208271780 -73921884 - MIR SINE MIR -77 185 36 521 378 25 0 chr1 208273263 208273504 -73920160 - MIR SINE MIR -8 254 8 667 268 0 7 chr1 208274704 208274846 -73918818 - FLAM_A SINE Alu -1 141 1 425 227 195 19 chr1 208283762 208283916 -73909748 - MER5A DNA MER1_type -7 182 2 990 163 259 52 chr1 208285310 208285599 -73908065 + MLT1A2 LTR MaLR 14 362 -12 360 362 31 8 chr1 208285942 208286069 -73907595 + MIR3 SINE MIR 30 159 -49 576 0 0 0 chr1 208286072 208286136 -73907528 + (TA)n Simple_repeat Simple_repeat 2 65 0 2387 85 0 0 chr1 208286164 208286458 -73907206 + AluY SINE Alu 1 294 -17 546 206 109 11 chr1 208288782 208288957 -73904707 - Charlie5 DNA MER1_type 0 2617 2426 2346 84 0 7 chr1 208290418 208290717 -73902947 - AluY SINE Alu -14 297 1 25 0 0 0 chr1 208291594 208291619 -73902045 + AT_rich Low_complexity Low_complexity 1 25 0 1474 188 35 11 chr1 208292755 208293037 -73900627 + AluJo SINE Alu 7 295 -17 457 325 59 11 chr1 208293186 208293427 -73900237 + L2 LINE L2 2770 3015 -257 199 238 109 99 chr1 208293473 208293574 -73900090 + L2 LINE L2 3171 3272 -41 438 336 118 22 chr1 208293603 208294367 -73899297 + L2 LINE L2 2377 3272 0 2248 65 32 0 chr1 208294514 208294793 -73898871 + AluY SINE Alu 16 303 -8 376 297 80 48 chr1 208295435 208295684 -73897980 + MIR SINE MIR 6 262 0 293 167 19 0 chr1 208296351 208296405 -73897259 - MIR SINE MIR -206 56 2 279 277 104 73 chr1 208296408 208296762 -73896902 - L2 LINE L2 -1340 1974 1610 1561 213 27 15 chr1 208297890 208298228 -73895436 - L1ME LINE L1 -361 5805 5464 396 0 0 0 chr1 208298229 208298273 -73895391 + (CA)n Simple_repeat Simple_repeat 2 45 0 6827 68 17 3 chr1 208298273 208299632 -73894032 - L1PA7 LINE L1 -20 6134 4761 * 12566 161 18 114 chr1 208299631 208302815 -73890849 - L1P LINE L1 -3260 2886 7 588 115 94 0 chr1 208302819 208302915 -73890749 - AluSg/x SINE Alu -19 293 189 899 243 47 4 chr1 208302916 208303192 -73890472 - L1M4 LINE L1 -2708 3438 3151 7703 47 5 0 chr1 208303194 208304157 -73889507 - L1PA4 LINE L1 0 6155 5191 14430 29 2 0 chr1 208304158 208305836 -73887828 + L1PA4 LINE L1 3516 5197 -949 * 26319 104 13 13 chr1 208305833 208309668 -73883996 - L1P LINE L1 -2300 3846 11 1920 227 46 65 chr1 208309675 208310286 -73883378 - L1M4 LINE L1 -2977 3169 2575 1592 169 47 11 chr1 208310286 208310565 -73883099 - AluSx SINE Alu -23 289 1 1920 227 46 65 chr1 208310565 208310754 -73882910 - L1M4 LINE L1 -3571 2575 2384 341 138 0 0 chr1 208310753 208310811 -73882853 - L1P LINE L1 -783 5378 5321 * 2638 99 6 3 chr1 208310811 208311163 -73882501 - L1PB1 LINE L1 -8 6143 5791 231 218 0 0 chr1 208311201 208311256 -73882408 + (TA)n Simple_repeat Simple_repeat 1 55 0 758 115 57 8 chr1 208311267 208311389 -73882275 - L1PB1 LINE L1 -361 5790 5663 * 2027 118 16 22 chr1 208311383 208311698 -73881966 - L1PBa LINE L1 -5917 946 634 1250 153 0 0 chr1 208311698 208311894 -73881770 - L1PBa LINE L1 -6663 200 5 3855 165 29 1 chr1 208311901 208312628 -73881036 - L1P LINE L1 -812 5334 4588 4722 98 14 56 chr1 208312669 208313397 -73880267 + L1PA13 LINE L1 5461 6157 -6 15531 190 24 8 chr1 208313464 208319007 -73874657 - L1PB1 LINE L1 -1 6866 1093 4007 221 54 10 chr1 208319010 208320007 -73873657 - L1PB1 LINE L1 -5817 1046 6 6018 252 63 40 chr1 208320056 208320956 -73872708 - L1MEc LINE L1 -3958 2438 1561 2366 86 0 3 chr1 208320956 208321257 -73872407 - AluY SINE Alu -11 300 1 6018 252 63 40 chr1 208321257 208321507 -73872157 - L1MEc LINE L1 -4835 1561 1318 261 0 0 0 chr1 208321507 208321536 -73872128 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 6018 252 63 40 chr1 208321536 208322733 -73870931 - L1MEc LINE L1 -5078 1318 35 2603 176 21 0 chr1 208323179 208323600 -73870064 + MSTB1 LTR MaLR 1 430 -2 26 64 0 0 chr1 208324009 208324056 -73869608 + AT_rich Low_complexity Low_complexity 1 47 0 191 390 31 6 chr1 208324809 208324968 -73868696 + L2 LINE L2 2812 2974 -298 868 180 26 110 chr1 208325194 208325256 -73868408 - MIR SINE MIR -1 261 195 5851 132 26 14 chr1 208325256 208326952 -73866712 - L1PA16 LINE L1 -2 6164 4456 868 180 26 110 chr1 208326952 208327161 -73866503 - MIR SINE MIR -67 195 13 1304 306 49 16 chr1 208327193 208327243 -73866421 - LTR16B LTR ERVL -2 462 415 2464 162 65 2 chr1 208327243 208327644 -73866020 + MSTB LTR MaLR 1 426 0 1304 306 49 16 chr1 208327644 208328040 -73865624 - LTR16B LTR ERVL -49 415 1 313 297 77 0 chr1 208328040 208328131 -73865533 + L2 LINE L2 3216 3313 0 1000 193 57 37 chr1 208328596 208328840 -73864824 - MLT1C LTR MaLR -46 421 173 2134 145 53 11 chr1 208328858 208329238 -73864426 - L1MB3 LINE L1 -1 6182 5787 2409 139 26 11 chr1 208329238 208329618 -73864046 - MLT1B LTR MaLR 0 390 5 5962 204 64 129 chr1 208329623 208331035 -73862629 - L1MC4a LINE L1 -107 7701 6199 623 226 0 0 chr1 208331035 208331150 -73862514 + MER7A DNA MER2_type 1 113 -233 662 159 84 0 chr1 208331152 208331259 -73862405 + MER7A DNA MER2_type 221 336 0 5962 204 64 129 chr1 208331259 208331383 -73862281 - L1MC4a LINE L1 -1610 6198 6068 204 67 0 0 chr1 208331383 208331413 -73862251 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 5962 204 64 129 chr1 208331413 208331568 -73862096 - L1MC4a LINE L1 -1740 6068 5904 2901 0 0 3 chr1 208331568 208331879 -73861785 - AluYa5 SINE Alu -1 310 1 5962 204 64 129 chr1 208331879 208332663 -73861001 - L1MC4a LINE L1 -1904 5904 5175 422 285 118 27 chr1 208332697 208332918 -73860746 + L3 LINE CR1 1143 1383 -194 220 322 59 34 chr1 208333317 208333435 -73860229 - L2 LINE L2 0 3313 3193 * 247 316 94 8 chr1 208333432 208333549 -73860115 - L3 LINE CR1 -1021 556 430 219 286 0 0 chr1 208334014 208334070 -73859594 - L3 LINE CR1 -13 1564 1509 346 338 142 52 chr1 208334127 208334550 -73859114 + L2 LINE L2 2807 3267 -5 181 327 96 19 chr1 208335160 208335264 -73858400 - MIR3 SINE MIR -34 174 63 657 230 43 0 chr1 208336135 208336274 -73857390 + MER3 DNA MER1_type 1 145 -64 3505 242 109 52 chr1 208436293 208437008 -73756656 + L1MEc LINE L1 738 1411 -4804 1295 224 91 77 chr1 208437008 208437504 -73756160 + MLT1D LTR MaLR 1 503 -2 3505 242 109 52 chr1 208437504 208439820 -73753844 + L1MEc LINE L1 1411 3924 -2291 * 9900 159 54 58 chr1 208439803 208442229 -73751435 + L1M4c LINE L1 5 2419 -3965 4099 87 17 0 chr1 208442329 208443041 -73750623 - L1P3 LINE L1 -693 5479 4761 * 11507 148 22 24 chr1 208443040 208446219 -73747445 - L1P3 LINE L1 -3260 3201 10 557 121 12 0 chr1 208446241 208446324 -73747340 - AluSg/x SINE Alu -40 270 187 776 243 47 4 chr1 208446325 208446601 -73747063 - L1M4 LINE L1 -2708 3438 3151 7204 47 5 0 chr1 208446603 208447566 -73746098 - L1PA4 LINE L1 0 6155 5191 13513 28 2 0 chr1 208447567 208449245 -73744419 + L1PA4 LINE L1 3516 5197 -949 * 24406 105 13 13 chr1 208449242 208453077 -73740587 - L1P LINE L1 -2300 3846 11 1578 227 46 66 chr1 208453084 208453696 -73739968 - L1M4 LINE L1 -2977 3169 2575 1601 169 47 11 chr1 208453696 208453975 -73739689 - AluSx SINE Alu -23 289 1 1578 227 46 66 chr1 208453975 208454164 -73739500 - L1M4 LINE L1 -3571 2575 2384 331 136 0 0 chr1 208454162 208454221 -73739443 - L1P LINE L1 -784 5379 5321 * 2453 99 6 3 chr1 208454221 208454573 -73739091 - L1PB1 LINE L1 -8 6143 5791 231 218 0 0 chr1 208454611 208454666 -73738998 + (TA)n Simple_repeat Simple_repeat 1 55 0 694 115 57 8 chr1 208454677 208454799 -73738865 - L1PB1 LINE L1 -361 5790 5663 * 1898 118 16 22 chr1 208454793 208455108 -73738556 - L1PBa LINE L1 -5917 946 634 1160 153 0 0 chr1 208455108 208455304 -73738360 - L1PBa LINE L1 -6663 200 5 3493 165 29 3 chr1 208455313 208456039 -73737625 - L1P LINE L1 -814 5332 4588 4376 96 14 56 chr1 208456080 208456808 -73736856 + L1PA13 LINE L1 5461 6157 -6 9039 184 7 4 chr1 208456875 208459770 -73733894 - L1PB1 LINE L1 -1 6150 3256 4092 52 4 7 chr1 208459870 208460413 -73733251 + L1PA7 LINE L1 5594 6134 -20 360 0 0 0 chr1 208460413 208460453 -73733211 + (TG)n Simple_repeat Simple_repeat 2 41 0 1414 213 27 15 chr1 208460454 208460792 -73732872 + L1ME LINE L1 5464 5805 -361 1137 328 112 38 chr1 208461873 208462277 -73731387 + L2 LINE L2 1560 1933 -1381 692 242 55 35 chr1 208462277 208462533 -73731131 + MIR SINE MIR 2 262 0 1137 328 112 38 chr1 208462533 208463434 -73730230 + L2 LINE L2 1933 2961 -353 222 37 0 0 chr1 208463702 208463729 -73729935 + (TA)n Simple_repeat Simple_repeat 2 28 0 360 132 100 61 chr1 208463763 208463894 -73729770 + LTR37A LTR ERV1 308 426 0 335 270 118 46 chr1 208463895 208464047 -73729617 - MIR SINE MIR -93 169 7 336 293 12 0 chr1 208464064 208464146 -73729518 + L2 LINE L2 3175 3257 -15 1571 191 52 33 chr1 208464307 208464862 -73728802 - MLT2A2 LTR ERVL 0 554 1 283 340 39 0 chr1 208464862 208464965 -73728699 + L3 LINE CR1 435 541 -1036 289 221 130 13 chr1 208465058 208465135 -73728529 + L2 LINE L2 3224 3309 -4 445 316 205 8 chr1 208465188 208465549 -73728115 + L2 LINE L2 1949 2380 -934 737 214 23 87 chr1 208465903 208466173 -73727491 + MER34 LTR ERV1 254 503 -39 3785 98 54 39 chr1 208466173 208466763 -73726901 + MER4A LTR ERV1 1 599 -1 737 214 23 87 chr1 208466763 208466801 -73726863 + MER34 LTR ERV1 503 542 0 223 343 14 0 chr1 208468160 208468233 -73725431 - MIR SINE MIR 0 262 189 637 140 0 53 chr1 208468263 208468377 -73725287 + AluJb SINE Alu 180 287 -25 198 0 0 0 chr1 208468398 208468420 -73725244 + (CCA)n Simple_repeat Simple_repeat 1 22 0 1449 146 38 17 chr1 208468420 208468717 -73724947 + MER61B LTR ERV1 3 396 -28 311 297 9 0 chr1 208468845 208468956 -73724708 + LTR37B LTR ERV1 6 117 -351 506 242 99 24 chr1 208468997 208469249 -73724415 + LTR37B LTR ERV1 198 468 0 429 374 17 17 chr1 208469252 208469426 -73724238 - MIR SINE MIR -76 186 13 485 287 123 40 chr1 208470159 208470459 -73723205 - MER102b DNA MER1_type -16 325 1 275 299 157 23 chr1 208470836 208470900 -73722764 + MIR SINE MIR 1 55 -207 1962 149 3 13 chr1 208470900 208471201 -73722463 - AluJb SINE Alu -14 298 1 275 299 157 23 chr1 208471201 208471353 -73722311 + MIR SINE MIR 55 246 -16 354 113 16 0 chr1 208471411 208471473 -73722191 - MLT1K LTR MaLR -17 571 509 919 235 107 80 chr1 208472232 208472756 -73720908 - MER34 LTR ERV1 -4 538 1 3219 214 58 23 chr1 208473040 208474020 -73719644 - L1ME1 LINE L1 -4 6162 5164 452 249 26 191 chr1 208475525 208475902 -73717762 - L2 LINE L2 0 3272 2958 389 273 45 39 chr1 208476293 208476447 -73717217 - MIR SINE MIR 0 262 108 1962 139 158 13 chr1 208477057 208477431 -73716233 + MSTA LTR MaLR 1 428 0 2093 236 61 4 chr1 208477763 208478272 -73715392 - MER74A LTR ERVL -20 538 1 645 302 0 11 chr1 208478690 208478869 -73714795 + MER5B DNA MER1_type 2 178 0 379 260 48 130 chr1 208479931 208480200 -73713464 - MIR SINE MIR 0 262 16 239 125 161 54 chr1 208480200 208480256 -73713408 - Charlie8 DNA MER1_type -12 2405 2344 1011 319 94 25 chr1 208480259 208480821 -73712843 + L2 LINE L2 2074 2674 -640 1272 245 68 16 chr1 208481989 208482414 -73711250 - MLT1C LTR MaLR 0 467 21 2394 112 31 8 chr1 208482414 208482770 -73710894 + THE1B LTR MaLR 1 364 0 215 256 67 22 chr1 208482802 208482892 -73710772 - MIR SINE MIR -121 141 48 318 303 112 91 chr1 208483168 208483498 -73710166 - L2 LINE L2 -3 3269 2933 310 333 105 38 chr1 208483554 208483821 -73709843 - L2 LINE L2 -475 2839 2555 228 346 125 10 chr1 208483943 208484047 -73709617 + L2 LINE L2 3121 3236 -36 202 282 0 42 chr1 208484061 208484132 -73709532 - L2 LINE L2 -781 2533 2466 1387 173 42 7 chr1 208484544 208484827 -73708837 - L1MA9 LINE L1 0 6312 6020 195 281 49 49 chr1 208486286 208486372 -73707292 - MER5B DNA MER1_type 0 189 93 2204 107 0 7 chr1 208486529 208486828 -73706836 + AluY SINE Alu 1 297 -14 6146 110 7 1 chr1 208486854 208487757 -73705907 + L1PA7 LINE L1 8 915 -5546 15273 85 16 2 chr1 208487766 208491035 -73702629 + L1PA7 LINE L1 3147 6456 -13 568 273 198 31 chr1 208491497 208491533 -73702131 + L2 LINE L2 1607 1636 -1678 1803 187 0 3 chr1 208491533 208491832 -73701832 - AluJb SINE Alu -14 298 1 568 273 198 31 chr1 208491832 208492440 -73701224 + L2 LINE L2 1636 2359 -955 576 261 119 31 chr1 208492516 208492776 -73700888 + L2 LINE L2 2995 3277 -36 256 285 123 15 chr1 208492783 208492913 -73700751 + MER5A DNA MER1_type 12 155 -34 1694 235 62 73 chr1 208493107 208493821 -73699843 + MER72 LTR ERV1 1 706 -16 185 248 120 60 chr1 208494063 208494196 -73699468 + L2 LINE L2 2857 2997 -275 188 351 91 0 chr1 208494275 208494352 -73699312 + L2 LINE L2 3140 3223 -49 768 240 62 5 chr1 208494360 208494552 -73699112 - MER63A DNA MER1_type -7 203 1 523 284 117 38 chr1 208494718 208494957 -73698707 - L3 LINE CR1 -291 1286 1029 252 300 29 50 chr1 208495042 208495182 -73698482 - L3 LINE CR1 -706 871 735 1310 150 5 24 chr1 208495342 208495549 -73698115 - AluJb SINE Alu -24 288 86 214 328 56 50 chr1 208495555 208495753 -73697911 - MIR SINE MIR -56 206 8 385 302 111 23 chr1 208496023 208496195 -73697469 - MIR SINE MIR -16 246 60 219 348 96 9 chr1 208497941 208498056 -73695608 - L2 LINE L2 -8 3264 3140 916 266 198 45 chr1 208498222 208499045 -73694619 + HAL1 LINE L1 2 950 -1557 226 177 18 26 chr1 208499059 208499172 -73694492 + (TA)n Simple_repeat Simple_repeat 1 112 0 325 149 83 24 chr1 208499185 208499353 -73694311 + (TA)n Simple_repeat Simple_repeat 2 179 0 3825 207 75 70 chr1 208499377 208500870 -73692794 + HAL1 LINE L1 973 2472 -35 424 344 189 26 chr1 208501212 208501715 -73691949 + L3 LINE CR1 249 833 -744 753 283 21 0 chr1 208502054 208502245 -73691419 + MIR SINE MIR 3 197 -65 198 71 0 0 chr1 208503430 208503458 -73690206 + (A)n Simple_repeat Simple_repeat 1 28 0 527 114 0 0 chr1 208503674 208503753 -73689911 - L1PA15 LINE L1 -265 5900 5822 972 109 58 46 chr1 208503756 208503930 -73689734 + L1PA15 LINE L1 5989 6164 -1 1408 194 78 70 chr1 208504028 208504376 -73689288 + Charlie1b DNA MER1_type 1 356 -2405 2412 66 0 0 chr1 208504376 208504679 -73688985 - AluY SINE Alu -8 303 1 1408 194 78 70 chr1 208504679 208504846 -73688818 + Charlie1b DNA MER1_type 356 520 -3 21 71 0 0 chr1 208505612 208505654 -73688010 + AT_rich Low_complexity Low_complexity 1 42 0 2994 185 56 35 chr1 208505753 208506520 -73687144 - L1MB7 LINE L1 -8 6176 5394 307 318 166 38 chr1 208506527 208506974 -73686690 - L1MEd LINE L1 -3343 3083 2580 21 36 0 0 chr1 208507048 208507076 -73686588 + AT_rich Low_complexity Low_complexity 1 28 0 1860 123 32 7 chr1 208507717 208508001 -73685663 - AluSx SINE Alu -21 291 1 337 320 113 30 chr1 208508159 208508362 -73685302 - HAL1b LINE L1 -731 617 398 367 297 103 0 chr1 208508643 208508838 -73684826 - HsTC2 DNA Tc2 -980 918 704 248 314 58 25 chr1 208508878 208508999 -73684665 - HsTC2 DNA Tc2 -1292 606 482 2897 175 19 7 chr1 208509283 208509871 -73683793 - L1PA13 LINE L1 -3367 3094 2500 12649 174 40 52 chr1 208509871 208510081 -73683583 + L1PA13 LINE L1 3097 3308 -3170 2559 75 0 0 chr1 208510081 208510387 -73683277 - AluY SINE Alu -5 306 1 12649 174 40 52 chr1 208510387 208513590 -73680074 + L1PA13 LINE L1 3308 6459 -19 288 307 80 13 chr1 208513675 208513900 -73679764 - L1ME LINE L1 -409 5712 5473 2459 114 19 3 chr1 208513914 208514283 -73679381 + THE1C LTR MaLR 1 375 0 9025 129 13 68 chr1 208514283 208515949 -73677715 + THE1C-int LTR MaLR 1 1574 -6 2159 135 41 11 chr1 208515953 208516317 -73677347 + THE1C LTR MaLR 1 375 0 344 285 64 9 chr1 208516613 208516877 -73676787 - L1MEd LINE L1 -4862 1554 1351 202 193 18 35 chr1 208517116 208517173 -73676491 + T-rich Low_complexity Low_complexity 3 58 0 6865 165 41 42 chr1 208518570 208520252 -73673412 - L1P3 LINE L1 -4698 1760 69 2062 141 20 3 chr1 208520252 208520558 -73673106 - AluSq SINE Alu -2 311 1 6865 165 41 42 chr1 208520558 208520615 -73673049 - L1P3 LINE L1 -6389 69 13 997 247 118 36 chr1 208520979 208521344 -73672320 - L1MEd LINE L1 -6004 422 28 201 286 0 0 chr1 208521385 208521427 -73672237 + L2 LINE L2 3220 3261 -11 2068 133 7 0 chr1 208521666 208521968 -73671696 - AluSq SINE Alu -8 305 2 471 293 66 12 chr1 208522155 208522368 -73671296 - MIR SINE MIR -36 226 3 2175 146 0 0 chr1 208522603 208522911 -73670753 + AluSx SINE Alu 1 308 -4 316 302 78 39 chr1 208523648 208523827 -73669837 + MIR SINE MIR 76 261 -1 2126 64 50 3 chr1 208524911 208525194 -73668470 + AluY SINE Alu 1 296 -15 764 299 149 18 chr1 208525204 208525599 -73668065 + L2 LINE L2 2833 3279 -34 2146 128 3 13 chr1 208525624 208525929 -73667735 - AluSx SINE Alu -10 302 1 4704 162 53 20 chr1 208526624 208527634 -73666030 + L1MA6 LINE L1 5255 6298 -2 31 0 0 0 chr1 208527642 208527673 -73665991 + AT_rich Low_complexity Low_complexity 1 31 0 258 32 0 0 chr1 208527673 208527704 -73665960 + (GA)n Simple_repeat Simple_repeat 2 32 0 271 314 46 62 chr1 208527743 208527937 -73665727 + MIR SINE MIR 23 213 -49 243 303 0 15 chr1 208527911 208527977 -73665687 - MIR SINE MIR -3 259 195 * 203 200 0 0 chr1 208527977 208528012 -73665652 + (TA)n Simple_repeat Simple_repeat 2 36 0 2317 222 89 24 chr1 208528015 208528196 -73665468 - L1ME3 LINE L1 -27 6135 5967 2100 124 65 11 chr1 208528196 208528552 -73665112 + THE1C LTR MaLR 1 375 0 9530 121 29 50 chr1 208528552 208530166 -73663498 + THE1C-int LTR MaLR 1 1580 0 1819 131 122 9 chr1 208530166 208530501 -73663163 + THE1C LTR MaLR 1 373 -2 2317 222 89 24 chr1 208530501 208531222 -73662442 - L1ME3 LINE L1 -194 5968 5177 1264 208 94 0 chr1 208531238 208531493 -73662171 - AluJo SINE Alu -33 279 1 894 255 156 22 chr1 208531496 208532123 -73661541 - L1ME3 LINE L1 -982 5164 4454 256 290 234 8 chr1 208532124 208532248 -73661416 - MIR SINE MIR -38 224 73 311 183 14 0 chr1 208532309 208532380 -73661284 + L1 LINE L1 5166 5237 -909 5794 43 9 4 chr1 208532608 208533360 -73660304 - L1PA4 LINE L1 -18 6137 5382 321 64 0 0 chr1 208533363 208533410 -73660254 - L1MA5 LINE L1 -183 6117 6071 5070 55 41 8 chr1 208533412 208534048 -73659616 + SVA Other Other 730 1386 0 3549 133 22 9 chr1 208534054 208534683 -73658981 - L1MA5 LINE L1 -346 5951 5315 * 26009 106 42 26 chr1 208534675 208540877 -73652787 - L1PA7 LINE L1 -4 6465 43 23868 145 15 10 chr1 208540977 208546750 -73646914 - L1PA8A LINE L1 -603 5843 6 2285 122 43 0 chr1 208546753 208547131 -73646533 - L1PB4 LINE L1 -117 6039 5645 377 141 14 0 chr1 208547166 208547237 -73646427 + (CA)n Simple_repeat Simple_repeat 2 73 0 2461 125 42 1 chr1 208547237 208547784 -73645880 - L1PB4 LINE L1 -483 5673 5106 399 224 67 30 chr1 208547844 208547978 -73645686 - MLT1J2 LTR MaLR -305 145 7 456 256 89 12 chr1 208548451 208548619 -73645045 - MLT1J2 LTR MaLR -268 182 2 188 234 234 13 chr1 208548625 208548702 -73644962 - MIR SINE MIR -44 218 125 371 107 0 0 chr1 208549635 208549691 -73643973 + Alu SINE Alu 1 56 -245 1298 149 0 0 chr1 208549691 208549942 -73643722 + AluSg/x SINE Alu 95 345 0 200 327 0 0 chr1 208550448 208550503 -73643161 + L3 LINE CR1 1512 1566 -11 689 299 9 14 chr1 208550952 208551163 -73642501 - MER63A DNA MER1_type 0 210 1 1928 153 7 3 chr1 208551659 208551960 -73641704 - AluSx SINE Alu -10 302 1 2049 135 28 0 chr1 208551960 208552286 -73641378 + L1PA15 LINE L1 5577 5911 -254 238 261 88 56 chr1 208552748 208553032 -73640632 + L1ME LINE L1 813 1105 -5100 1542 195 10 17 chr1 208553132 208553430 -73640234 + AluJb SINE Alu 1 296 -16 238 295 27 73 chr1 208553448 208553777 -73639887 + L1ME LINE L1 1101 1414 -4803 249 257 119 0 chr1 208553837 208553946 -73639718 + L1MC4 LINE L1 7050 7171 -871 2156 96 0 59 chr1 208553948 208554271 -73639393 + AluSc SINE Alu 5 308 -1 315 154 66 110 chr1 208554296 208554432 -73639232 + L1MC4 LINE L1 7913 8042 0 378 343 48 0 chr1 208554435 208554601 -73639063 + L1ME LINE L1 1628 1801 -4595 524 271 28 0 chr1 208554812 208554989 -73638675 - L1M4 LINE L1 -2114 4032 3851 485 132 11 0 chr1 208555003 208555094 -73638570 - L1MB2 LINE L1 -3 6168 6077 4485 92 3 6 chr1 208555215 208555855 -73637809 + L1PA8A LINE L1 5493 6130 -1 874 128 0 0 chr1 208555859 208555992 -73637672 + L1PB4 LINE L1 6023 6155 -1 597 231 23 0 chr1 208556284 208556414 -73637250 - MER3 DNA MER1_type -76 133 1 381 344 131 52 chr1 208557999 208558426 -73635238 - L2 LINE L2 -5 3267 2807 222 286 0 0 chr1 208558483 208558539 -73635125 + L3 LINE CR1 1509 1564 -13 250 316 94 8 chr1 208559004 208559121 -73634543 + L3 LINE CR1 430 556 -1021 226 322 59 34 chr1 208559118 208559236 -73634428 + L2 LINE L2 3193 3313 0 * 443 285 118 27 chr1 208559633 208559854 -73633810 - L3 LINE CR1 -194 1383 1143 1618 222 49 66 chr1 208559926 208560585 -73633079 + L1MC4a LINE L1 5218 5397 -749 7677 136 75 27 chr1 208560690 208561364 -73632300 + L1PA8 LINE L1 1516 2156 -3990 1565 59 0 5 chr1 208561364 208561556 -73632108 + L1PA4 LINE L1 5951 6152 -3 7677 136 75 27 chr1 208561556 208562379 -73631285 + L1PA8 LINE L1 2156 3086 -3060 2309 92 0 3 chr1 208562369 208562697 -73630967 + L1PA7 LINE L1 5808 6134 -20 * 14521 116 43 111 chr1 208562721 208565867 -73627797 + L1PA8 LINE L1 3066 6169 -3 190 331 124 41 chr1 208566797 208566942 -73626722 - MIR3 SINE MIR -51 157 1 905 270 143 16 chr1 208566980 208567523 -73626141 + L2 LINE L2 2684 3313 0 990 158 13 0 chr1 208569210 208569368 -73624296 - AluSg/x SINE Alu -6 306 147 249 229 118 1 chr1 208569378 208569456 -73624208 + MIR3 SINE MIR 99 188 -20 234 255 71 50 chr1 208569470 208569611 -73624053 - MER103 DNA DNA -21 145 2 189 0 0 0 chr1 208572285 208572306 -73621358 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 527 207 100 29 chr1 208572498 208572638 -73621026 + MIR SINE MIR 53 202 -60 5175 234 76 21 chr1 208572736 208574188 -73619476 + L2 LINE L2 19 1550 -1764 248 283 40 0 chr1 208574249 208574348 -73619316 - L1ME LINE L1 -383 5738 5636 290 282 98 96 chr1 208575081 208575417 -73618247 + HAL1 LINE L1 74 413 -2094 2168 119 0 25 chr1 208575417 208575735 -73617929 + AluSg SINE Alu 1 310 0 290 282 98 96 chr1 208575735 208575827 -73617837 + HAL1 LINE L1 413 503 -2004 500 199 91 95 chr1 208576024 208576320 -73617344 + L1 LINE L1 2205 2499 -3647 1685 253 4 28 chr1 208576322 208576998 -73616666 + L1 LINE L1 2856 3515 -2631 6237 78 3 8 chr1 208576998 208578556 -73615108 + HERV9 LTR ERV1 5677 7305 -1094 7618 117 56 69 chr1 208578569 208581308 -73612356 + pTR5 LTR ERV1 504 8399 0 4663 177 55 9 chr1 208581337 208582401 -73611263 + L1MB3 LINE L1 3058 4169 -1977 562 91 45 0 chr1 208582402 208582512 -73611152 + L1M LINE L1 5254 5368 -937 7981 150 147 8 chr1 208582523 208584132 -73609532 + L1MA6 LINE L1 1 1832 -5031 5287 153 20 34 chr1 208584115 208584772 -73608892 + L1MA6 LINE L1 5422 6086 -930 * 1901 151 3 13 chr1 208584772 208585070 -73608594 + AluSx SINE Alu 1 295 -17 5287 153 20 34 chr1 208585070 208586001 -73607663 + L1MA6 LINE L1 6086 7010 -6 3985 189 36 20 chr1 208586007 208586874 -73606790 + L1MB3 LINE L1 4457 5382 -801 726 145 4 183 chr1 208586874 208587109 -73606555 - 7SK RNA RNA 0 193 1 3985 189 36 20 chr1 208587109 208587872 -73605792 + L1MB3 LINE L1 5382 6131 -52 824 240 92 34 chr1 208588012 208588150 -73605514 + L1MC4a LINE L1 5808 5937 -1871 2778 6 0 13 chr1 208588150 208588465 -73605199 + AluYa5 SINE Alu 1 311 0 824 240 92 34 chr1 208588465 208588615 -73605049 + L1MC4a LINE L1 5937 6077 -1731 204 67 0 0 chr1 208588615 208588645 -73605019 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 824 240 92 34 chr1 208588645 208588768 -73604896 + L1MC4a LINE L1 6077 6244 -1564 611 159 84 0 chr1 208588769 208588876 -73604788 - MER7A DNA MER2_type 0 336 221 574 226 0 0 chr1 208588878 208588993 -73604671 - MER7A DNA MER2_type -233 113 1 4088 213 112 29 chr1 208588997 208590403 -73603261 + L1MC4 LINE L1 6271 7792 -250 2221 139 26 11 chr1 208590411 208590791 -73602873 + MLT1B LTR MaLR 5 390 0 1943 145 53 11 chr1 208590791 208591171 -73602493 + L1MB3 LINE L1 5787 6182 -1 1000 193 57 37 chr1 208591189 208591433 -73602231 + MLT1C LTR MaLR 173 421 -46 313 297 77 0 chr1 208591898 208591989 -73601675 - L2 LINE L2 0 3313 3216 1304 306 49 16 chr1 208591989 208592385 -73601279 + LTR16B LTR ERVL 1 415 -49 2464 162 65 2 chr1 208592385 208592786 -73600878 - MSTB LTR MaLR 0 426 1 1304 306 49 16 chr1 208592786 208592836 -73600828 + LTR16B LTR ERVL 415 462 -2 868 180 26 110 chr1 208592868 208593077 -73600587 + MIR SINE MIR 13 195 -67 5851 132 21 13 chr1 208593077 208594773 -73598891 + L1PA16 LINE L1 4456 6164 -2 868 180 26 110 chr1 208594773 208594835 -73598829 + MIR SINE MIR 195 261 -1 191 390 31 6 chr1 208595061 208595220 -73598444 - L2 LINE L2 -298 2974 2812 26 64 0 0 chr1 208595973 208596020 -73597644 + AT_rich Low_complexity Low_complexity 1 47 0 2603 176 21 0 chr1 208596429 208596850 -73596814 - MSTB1 LTR MaLR -2 430 1 6029 253 63 40 chr1 208597296 208598493 -73595171 + L1MEc LINE L1 35 1203 -5193 261 0 0 0 chr1 208598493 208598522 -73595142 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 6029 253 63 40 chr1 208598522 208598772 -73594892 + L1MEc LINE L1 1203 1446 -4950 2366 86 0 3 chr1 208598772 208599073 -73594591 + AluY SINE Alu 1 300 -11 6029 253 63 40 chr1 208599073 208599973 -73593691 + L1MEc LINE L1 1446 2438 -3958 4007 221 54 10 chr1 208600022 208601019 -73592645 + L1PBa LINE L1 6 1046 -5817 9166 161 38 5 chr1 208601022 208603679 -73589985 + L1PBa LINE L1 1093 3978 -2884 296 222 0 111 chr1 208604097 208604214 -73589450 - MLT1H LTR MaLR -12 537 434 2236 323 73 21 chr1 208605624 208607548 -73586116 - HERV16 LTR ERVL -2510 2486 397 366 318 47 0 chr1 208607685 208607833 -73585831 - HERV16 LTR ERVL -4802 194 40 1094 259 76 51 chr1 208607844 208608276 -73585388 - LTR16A1 LTR ERVL 0 457 15 441 263 18 53 chr1 208608291 208608317 -73585347 - MIR SINE MIR -16 246 221 1923 132 29 4 chr1 208608317 208608597 -73585067 - AluSx SINE Alu -4 308 22 441 263 18 53 chr1 208608597 208608741 -73584923 - MIR SINE MIR -41 221 82 306 303 131 34 chr1 208609149 208609324 -73584340 - MIR SINE MIR -39 223 32 331 241 111 0 chr1 208609915 208610023 -73583641 + MIR SINE MIR 81 200 -62 2564 263 59 10 chr1 208610555 208611335 -73582329 - L1ME3A LINE L1 -45 6125 5308 230 217 57 154 chr1 208611718 208611893 -73581771 - LTR28 LTR ERV1 -15 1005 848 884 266 72 29 chr1 208611901 208612342 -73581322 - LTR1B LTR ERV1 -328 498 53 11738 105 39 15 chr1 208612393 208614161 -73579503 + L1PBa LINE L1 1 1809 -5054 6342 35 1 51 chr1 208614352 208615135 -73578529 - L1PA5 LINE L1 -4 6150 5407 6963 81 84 1 chr1 208615135 208616174 -73577490 + L1PBa LINE L1 1795 2919 -3944 188 230 54 40 chr1 208721464 208721538 -73472126 - L2 LINE L2 -3139 175 101 443 227 195 19 chr1 208721566 208721720 -73471944 - MER5A DNA MER1_type -7 182 2 908 163 259 52 chr1 208723114 208723403 -73470261 + MLT1A2 LTR MaLR 14 362 -12 367 362 31 8 chr1 208723746 208723873 -73469791 + MIR3 SINE MIR 30 159 -49 180 0 0 0 chr1 208723876 208723896 -73469768 + (TA)n Simple_repeat Simple_repeat 2 21 0 2446 81 0 0 chr1 208723924 208724219 -73469445 + AluY SINE Alu 1 295 -16 180 348 0 0 chr1 208725999 208726068 -73467596 + L2 LINE L2 1178 1246 -2068 496 206 109 11 chr1 208726543 208726718 -73466946 - Charlie5 DNA MER1_type -34 2578 2387 2384 84 0 7 chr1 208728175 208728474 -73465190 - AluY SINE Alu -14 297 1 22 0 0 0 chr1 208729351 208729373 -73464291 + AT_rich Low_complexity Low_complexity 1 22 0 1538 187 32 11 chr1 208730509 208730792 -73462872 + AluJo SINE Alu 7 295 -17 466 325 59 11 chr1 208730941 208731182 -73462482 + L2 LINE L2 2770 3015 -257 208 238 109 99 chr1 208731228 208731329 -73462335 + L2 LINE L2 3171 3272 -41 486 335 118 22 chr1 208731358 208732122 -73461542 + L2 LINE L2 2377 3272 0 2285 65 32 0 chr1 208732269 208732548 -73461116 + AluY SINE Alu 16 303 -8 409 306 79 48 chr1 208733187 208733439 -73460225 + MIR SINE MIR 3 262 0 252 276 138 41 chr1 208734454 208734577 -73459087 - L2 LINE L2 -2 3311 3177 215 238 0 0 chr1 208735606 208735648 -73458016 - L2 LINE L2 -10 3303 3262 192 257 114 14 chr1 208735648 208735718 -73457946 - MIR3 SINE MIR -7 201 125 191 88 29 0 chr1 208736155 208736189 -73457475 + (TTG)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr1 208739813 208739844 -73453820 + (TG)n Simple_repeat Simple_repeat 2 32 0 390 250 75 17 chr1 208741921 208742041 -73451623 - MIR SINE MIR -57 205 79 969 203 11 0 chr1 208742627 208742814 -73450850 - MER58A DNA MER1_type -35 189 1 1297 224 50 3 chr1 208743801 208744100 -73449564 - MER58B DNA MER1_type -28 313 1 625 259 36 32 chr1 208744992 208745270 -73448394 + MLT1J LTR MaLR 226 504 -7 241 276 10 61 chr1 208745563 208745661 -73448003 + L2 LINE L2 3173 3265 -7 591 144 0 0 chr1 208748008 208748098 -73445566 - 5S rRNA rRNA -31 90 1 905 138 0 0 chr1 208750089 208750219 -73443445 + FLAM_C SINE Alu 2 131 -2 531 293 16 37 chr1 208750436 208750624 -73443040 - MIR3 SINE MIR -6 202 19 252 276 73 65 chr1 208751117 208751240 -73442424 + MIR SINE MIR 1 124 -138 245 208 19 0 chr1 208751314 208751367 -73442297 + CT-rich Low_complexity Low_complexity 2 55 0 895 141 18 0 chr1 208751550 208751720 -73441944 + L1MA4 LINE L1 6123 6295 -5 335 338 40 20 chr1 208751783 208751934 -73441730 - L3 LINE CR1 -3 1574 1421 28 29 0 0 chr1 208755217 208755252 -73438412 + AT_rich Low_complexity Low_complexity 1 35 0 300 319 21 28 chr1 208756499 208756640 -73437024 - L3 LINE CR1 -219 1358 1219 22 70 0 0 chr1 208757359 208757402 -73436262 + AT_rich Low_complexity Low_complexity 1 43 0 380 289 0 0 chr1 208757405 208757519 -73436145 - L1MA10 LINE L1 -4 6330 6217 356 293 57 51 chr1 208757988 208758145 -73435519 + MIR3 SINE MIR 41 198 -10 553 311 160 0 chr1 208758305 208758517 -73435147 - MIR SINE MIR -15 247 2 558 197 36 7 chr1 208758748 208758885 -73434779 + L1MB8 LINE L1 6035 6175 -3 775 184 43 6 chr1 208759007 208759170 -73434494 - MLT1A1 LTR MaLR 0 365 197 244 89 44 0 chr1 208759191 208759236 -73434428 - L1MB7 LINE L1 0 6184 6138 3219 31 5 0 chr1 208759252 208759636 -73434028 - L1PA4 LINE L1 0 6155 5770 1196 205 70 62 chr1 208759705 208760061 -73433603 + MLT1A1 LTR MaLR 6 364 -1 744 166 7 7 chr1 208760061 208760200 -73433464 - MLT1A1 LTR MaLR -226 139 1 590 271 173 28 chr1 208760488 208760743 -73432921 + L3 LINE CR1 1068 1359 -218 578 291 16 42 chr1 208761488 208761677 -73431987 + MER5A DNA MER1_type 6 189 0 353 290 28 9 chr1 208761810 208761917 -73431747 + MER81 DNA DNA 2 110 -4 180 176 0 0 chr1 208762457 208762491 -73431173 + CT-rich Low_complexity Low_complexity 3 36 0 526 357 70 48 chr1 208763991 208764305 -73429359 + L2 LINE L2 2951 3271 -1 349 291 129 36 chr1 208764309 208764367 -73429297 - MIR SINE MIR 0 262 211 195 42 0 0 chr1 208764367 208764391 -73429273 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 222 37 0 0 chr1 208764390 208764417 -73429247 + (TG)n Simple_repeat Simple_repeat 2 28 0 349 291 129 36 chr1 208764391 208764565 -73429099 - MIR SINE MIR -51 211 36 527 378 25 0 chr1 208766048 208766289 -73427375 - MIR SINE MIR -8 254 8 616 268 0 7 chr1 208767489 208767631 -73426033 - FLAM_A SINE Alu -1 141 1 4206 75 2 7 chr1 208771119 208771702 -73421962 - HERV9 LTR ERV1 -2143 6256 5677 1685 253 4 28 chr1 208771702 208772378 -73421286 - L1 LINE L1 -2631 3751 3092 10079 161 59 60 chr1 208772380 208775118 -73418546 - L1 LINE L1 -3647 2735 5 3505 255 108 3 chr1 208775101 208776905 -73416759 - L1MEc LINE L1 -2291 3924 1951 * 506 221 147 20 chr1 208777097 208777301 -73416363 - L1MEc LINE L1 -4538 1858 1629 567 171 17 8 chr1 208777417 208777534 -73416130 - MLT1D LTR MaLR -2 503 386 198 0 0 0 chr1 208777565 208777587 -73416077 + (T)n Simple_repeat Simple_repeat 1 22 0 2678 259 98 41 chr1 208777702 208778811 -73414853 - L1MEc LINE L1 -4904 1492 287 216 0 0 0 chr1 208778811 208778835 -73414829 + (TCTCC)n Simple_repeat Simple_repeat 4 27 0 2678 259 98 41 chr1 208778835 208779105 -73414559 - L1MEc LINE L1 -6109 287 34 198 255 0 0 chr1 208779618 208779665 -73413999 - L2 LINE L2 0 3313 3267 189 349 29 63 chr1 208779732 208779907 -73413757 + L2 LINE L2 3099 3267 -5 2505 92 0 3 chr1 208779921 208780269 -73413395 - L1PB1 LINE L1 -5 6146 5800 418 211 19 8 chr1 208781044 208781175 -73412489 + L1ME1 LINE L1 3638 3777 -2369 1101 212 66 49 chr1 208781197 208781608 -73412056 + L1ME1 LINE L1 4580 4997 -1149 1749 207 41 57 chr1 208781677 208782190 -73411474 + MLT1D LTR MaLR 1 505 0 664 271 64 76 chr1 208782851 208783163 -73410501 - MLT1J LTR MaLR -31 480 175 4780 90 6 16 chr1 208783163 208783830 -73409834 - PABL_A LTR ERV1 0 660 1 664 271 64 76 chr1 208783830 208784001 -73409663 - MLT1J LTR MaLR -336 175 3 316 358 89 74 chr1 208784031 208784355 -73409309 - L2 LINE L2 -33 3239 2911 467 274 151 14 chr1 208784505 208784717 -73408947 - L2 LINE L2 -1000 2314 2074 239 125 161 54 chr1 208784720 208784776 -73408888 + Charlie8 DNA MER1_type 2344 2405 -12 379 260 48 130 chr1 208784776 208785045 -73408619 + MIR SINE MIR 16 262 0 645 302 0 11 chr1 208786107 208786286 -73407378 - MER5B DNA MER1_type 0 178 2 2093 236 61 4 chr1 208786705 208787214 -73406450 + MER74A LTR ERVL 1 538 -20 1962 139 158 13 chr1 208787546 208787920 -73405744 - MSTA LTR MaLR 0 428 1 389 273 45 39 chr1 208788530 208788684 -73404980 + MIR SINE MIR 108 262 0 452 249 26 191 chr1 208789075 208789452 -73404212 + L2 LINE L2 2958 3272 0 3219 214 58 23 chr1 208790957 208791937 -73401727 + L1ME1 LINE L1 5164 6162 -4 919 235 107 80 chr1 208792221 208792745 -73400919 + MER34 LTR ERV1 1 538 -4 354 113 16 0 chr1 208793677 208793739 -73399925 + MLT1K LTR MaLR 509 571 -17 275 299 157 23 chr1 208793797 208793949 -73399715 - MIR SINE MIR -16 246 55 1962 149 3 13 chr1 208793949 208794250 -73399414 + AluJb SINE Alu 1 298 -14 275 299 157 23 chr1 208794250 208794314 -73399350 - MIR SINE MIR -207 55 1 485 287 123 40 chr1 208794691 208794991 -73398673 + MER102b DNA MER1_type 1 325 -16 429 374 17 17 chr1 208795773 208795947 -73397717 + MIR SINE MIR 13 186 -76 506 242 99 24 chr1 208795950 208796202 -73397462 - LTR37B LTR ERV1 0 468 198 311 297 9 0 chr1 208796243 208796354 -73397310 - LTR37B LTR ERV1 -351 117 6 1449 146 38 17 chr1 208796482 208796779 -73396885 - MER61B LTR ERV1 -28 396 3 198 0 0 0 chr1 208796779 208796801 -73396863 + (TGG)n Simple_repeat Simple_repeat 1 22 0 637 140 0 53 chr1 208796822 208796936 -73396728 - AluJb SINE Alu -25 287 180 223 343 14 0 chr1 208796966 208797039 -73396625 + MIR SINE MIR 189 262 0 1383 236 28 84 chr1 208798398 208798436 -73395228 - MER34 LTR ERV1 0 542 503 3785 98 54 39 chr1 208798436 208799026 -73394638 - MER4A LTR ERV1 -1 599 1 1383 236 28 84 chr1 208799026 208799560 -73394104 - MER34 LTR ERV1 -39 503 2 718 344 34 12 chr1 208799562 208799885 -73393779 - L3 LINE CR1 -406 1171 842 473 314 206 6 chr1 208800018 208800378 -73393286 - L2 LINE L2 -934 2380 1949 289 221 130 13 chr1 208800431 208800508 -73393156 - L2 LINE L2 -4 3309 3224 283 340 39 0 chr1 208800601 208800704 -73392960 - L3 LINE CR1 -1036 541 435 1571 191 52 33 chr1 208800704 208801259 -73392405 + MLT2A2 LTR ERVL 1 554 0 336 293 12 0 chr1 208801420 208801502 -73392162 - L2 LINE L2 -15 3257 3175 335 270 118 46 chr1 208801519 208801671 -73391993 + MIR SINE MIR 7 169 -93 360 132 100 61 chr1 208801672 208801803 -73391861 - LTR37A LTR ERV1 0 457 308 222 37 0 0 chr1 208801837 208801864 -73391800 + (TA)n Simple_repeat Simple_repeat 2 28 0 1137 328 112 38 chr1 208802132 208803033 -73390631 - L2 LINE L2 -353 2961 1933 692 242 55 35 chr1 208803033 208803289 -73390375 - MIR SINE MIR 0 262 2 1137 328 112 38 chr1 208803289 208803693 -73389971 - L2 LINE L2 -1381 1933 1560 1414 213 27 15 chr1 208804774 208805112 -73388552 - L1ME LINE L1 -361 5805 5464 360 0 0 0 chr1 208805113 208805153 -73388511 + (CA)n Simple_repeat Simple_repeat 2 41 0 6363 68 17 3 chr1 208805153 208806512 -73387152 - L1PA7 LINE L1 -20 6134 4761 * 11507 148 22 25 chr1 208806511 208809691 -73383973 - L1P3 LINE L1 -3260 3201 10 358 181 121 0 chr1 208809700 208809783 -73383881 - AluSg/x SINE Alu -7 295 203 2223 164 65 5 chr1 208809894 208810296 -73383368 - MSTB LTR MaLR 0 426 1 885 180 26 110 chr1 208810378 208810587 -73383077 + MIR SINE MIR 13 195 -67 5405 132 21 13 chr1 208810587 208812283 -73381381 + L1PA16 LINE L1 4456 6164 -2 885 180 26 110 chr1 208812283 208812345 -73381319 + MIR SINE MIR 195 261 -1 198 390 31 6 chr1 208812571 208812730 -73380934 - L2 LINE L2 -298 2974 2812 26 64 0 0 chr1 208813483 208813530 -73380134 + AT_rich Low_complexity Low_complexity 1 47 0 1369 142 13 0 chr1 208813939 208814165 -73379499 - MSTB1 LTR MaLR -2 430 202 7261 151 24 25 chr1 208814402 208816050 -73377614 - L1P3 LINE L1 -4734 1141 6 2285 122 43 0 chr1 208816053 208816431 -73377233 - L1PB4 LINE L1 -117 6039 5645 377 141 14 0 chr1 208816466 208816537 -73377127 + (CA)n Simple_repeat Simple_repeat 2 73 0 2449 129 41 2 chr1 208816537 208817084 -73376580 - L1PB4 LINE L1 -483 5673 5106 399 224 67 30 chr1 208817144 208817278 -73376386 - MLT1J2 LTR MaLR -305 145 7 656 195 16 0 chr1 208817803 208817931 -73375733 - MSTB1 LTR MaLR -302 130 1 5024 256 63 40 chr1 208818377 208819574 -73374090 + L1MEc LINE L1 35 1202 -5194 261 0 0 0 chr1 208819574 208819603 -73374061 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 5024 256 63 40 chr1 208819603 208819853 -73373811 + L1MEc LINE L1 1202 1445 -4951 2363 86 0 3 chr1 208819853 208820154 -73373510 + AluY SINE Alu 1 300 -11 5024 256 63 40 chr1 208820154 208821053 -73372611 + L1MEc LINE L1 1445 2438 -3958 3637 223 54 10 chr1 208821102 208822099 -73371565 + L1PB1 LINE L1 6 1046 -5817 13997 192 28 14 chr1 208822102 208827645 -73366019 + L1PB1 LINE L1 1093 6866 -1 4376 96 14 56 chr1 208827712 208828440 -73365224 - L1PA13 LINE L1 -6 6157 5461 1692 22 4 0 chr1 208828572 208828861 -73364803 - L1PA13 LINE L1 -675 5480 5191 13513 28 2 0 chr1 208828862 208830540 -73363124 + L1PA13 LINE L1 3516 5197 -949 * 24387 105 13 13 chr1 208830537 208834372 -73359292 - L1P LINE L1 -2300 3846 11 1573 228 48 65 chr1 208834379 208834990 -73358674 - L1M4 LINE L1 -2977 3169 2574 1549 169 50 11 chr1 208834990 208835268 -73358396 - AluSx SINE Alu -23 289 1 1573 228 48 65 chr1 208835268 208835456 -73358208 - L1M4 LINE L1 -3572 2574 2384 331 136 0 0 chr1 208835454 208835513 -73358151 - L1P LINE L1 -784 5379 5321 * 2453 99 6 3 chr1 208835513 208835865 -73357799 - L1PB1 LINE L1 -8 6143 5791 231 218 0 0 chr1 208835903 208835958 -73357706 + (TA)n Simple_repeat Simple_repeat 2 56 0 694 115 57 8 chr1 208835969 208836091 -73357573 - L1PB1 LINE L1 -361 5790 5663 * 1898 118 16 22 chr1 208836085 208836400 -73357264 - L1PBa LINE L1 -5917 946 634 1160 153 0 0 chr1 208836400 208836596 -73357068 - L1PBa LINE L1 -6663 200 5 2512 164 39 2 chr1 208836605 208837142 -73356522 - L1P LINE L1 -814 5332 4776 261 156 22 0 chr1 208837249 208837294 -73356370 - LTR16B LTR ERVL -418 46 1 318 297 77 0 chr1 208837294 208837385 -73356279 + L2 LINE L2 3216 3313 0 900 193 57 37 chr1 208837850 208838094 -73355570 - MLT1C LTR MaLR -46 421 173 1943 145 53 11 chr1 208838112 208838492 -73355172 - L1MB3 LINE L1 -1 6182 5787 2221 139 26 11 chr1 208838492 208838872 -73354792 - MLT1B LTR MaLR 0 390 5 5061 203 63 131 chr1 208838877 208840290 -73353374 - L1MC4a LINE L1 -107 7701 6194 574 226 0 0 chr1 208840290 208840405 -73353259 + MER7A DNA MER2_type 1 113 -233 611 159 84 0 chr1 208840407 208840514 -73353150 + MER7A DNA MER2_type 231 346 0 5061 203 63 131 chr1 208840514 208840638 -73353026 - L1MC4a LINE L1 -1615 6193 6062 204 67 0 0 chr1 208840638 208840668 -73352996 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 5061 203 63 131 chr1 208840668 208840824 -73352840 - L1MC4a LINE L1 -1746 6062 5897 2871 0 0 3 chr1 208840824 208841136 -73352528 - AluYa5 SINE Alu 0 311 1 5061 203 63 131 chr1 208841136 208841882 -73351782 - L1MC4a LINE L1 -1911 5897 5218 443 285 118 27 chr1 208841954 208842175 -73351489 + L3 LINE CR1 1143 1383 -194 226 322 59 34 chr1 208842572 208842690 -73350974 - L2 LINE L2 0 3313 3193 * 250 316 94 8 chr1 208842687 208842804 -73350860 - L3 LINE CR1 -1021 556 430 222 286 0 0 chr1 208843269 208843325 -73350339 - L3 LINE CR1 -13 1564 1509 381 338 142 52 chr1 208843382 208843805 -73349859 + L2 LINE L2 2807 3267 -5 657 230 43 0 chr1 208845390 208845529 -73348135 + MER3 DNA MER1_type 1 145 -64 937 144 0 0 chr1 208845812 208845951 -73347713 - L1PB4 LINE L1 -1 6155 6017 23904 122 13 2 chr1 208845949 208850461 -73343203 - L1PA8A LINE L1 -1 6130 1577 1949 230 67 78 chr1 208850647 208851361 -73342303 - MER72 LTR ERV1 -16 706 1 256 285 123 15 chr1 208851555 208851685 -73341979 - MER5A DNA MER1_type -34 155 12 564 261 119 31 chr1 208851692 208851952 -73341712 - L2 LINE L2 -36 3277 2995 554 273 198 31 chr1 208852028 208852636 -73341028 - L2 LINE L2 -955 2359 1636 1773 187 0 3 chr1 208852636 208852935 -73340729 + AluJb SINE Alu 1 298 -14 554 273 198 31 chr1 208852935 208852971 -73340693 - L2 LINE L2 -1678 1636 1607 18407 101 9 1 chr1 208853433 208856702 -73336962 - L1PA7 LINE L1 -13 6456 3147 6538 110 7 1 chr1 208856711 208857614 -73336050 - L1PA7 LINE L1 -5546 915 8 2203 107 0 7 chr1 208857640 208857939 -73335725 - AluY SINE Alu -14 297 1 194 281 49 49 chr1 208858096 208858182 -73335482 + MER5B DNA MER1_type 93 189 0 1534 173 42 7 chr1 208859641 208859924 -73333740 + L1MA9 LINE L1 6020 6312 0 198 282 0 42 chr1 208860336 208860407 -73333257 + L2 LINE L2 2466 2533 -781 220 346 125 10 chr1 208860421 208860525 -73333139 - L2 LINE L2 -36 3236 3121 306 333 105 38 chr1 208860647 208860914 -73332750 + L2 LINE L2 2555 2839 -475 309 285 121 100 chr1 208860970 208861300 -73332364 + L2 LINE L2 2933 3269 -3 205 256 67 22 chr1 208861576 208861666 -73331998 + MIR SINE MIR 48 141 -121 2567 112 31 8 chr1 208861698 208862054 -73331610 - THE1B LTR MaLR 0 364 1 1034 257 71 23 chr1 208862054 208862404 -73331260 + MLT1C LTR MaLR 21 387 -80 5439 72 5 9 chr1 208862506 208863256 -73330408 + HERV9 LTR ERV1 6559 7305 -1094 8370 117 56 69 chr1 208863269 208866014 -73327650 + pTR5 LTR ERV1 504 2438 0 5138 184 51 6 chr1 208866018 208867101 -73326563 + L1MB3 LINE L1 3038 4169 -1977 614 91 45 0 chr1 208867102 208867212 -73326452 + L1M LINE L1 5254 5368 -937 8833 145 147 8 chr1 208867223 208868831 -73324833 + L1MA6 LINE L1 1 1832 -5031 5783 153 20 34 chr1 208868814 208869471 -73324193 + L1MA6 LINE L1 5422 6086 -930 * 1882 151 3 13 chr1 208869471 208869769 -73323895 + AluSx SINE Alu 1 295 -17 5783 153 20 34 chr1 208869769 208870700 -73322964 + L1MA6 LINE L1 6086 7010 -6 4815 183 36 19 chr1 208870706 208871574 -73322090 + L1MB3 LINE L1 4457 5309 -874 804 145 0 179 chr1 208871574 208871809 -73321855 - 7SK RNA RNA 0 193 1 4815 183 36 19 chr1 208871809 208872618 -73321046 + L1MB3 LINE L1 5309 6180 -3 601 280 27 0 chr1 208872623 208872809 -73320855 + L1M4 LINE L1 3842 4032 -2114 376 140 66 110 chr1 208873189 208873325 -73320339 - L1MC4 LINE L1 0 8042 7913 2154 96 0 59 chr1 208873350 208873673 -73319991 - AluSc SINE Alu -1 308 5 298 257 119 0 chr1 208873675 208873784 -73319880 - L1MC4 LINE L1 -871 7171 7050 * 331 281 91 73 chr1 208873777 208874186 -73319478 - L1ME LINE L1 -4706 1376 1045 1514 195 10 17 chr1 208874186 208874484 -73319180 - AluJb SINE Alu -16 296 1 331 281 91 73 chr1 208874484 208874909 -73318755 - L1ME LINE L1 -5037 1045 629 2210 135 28 0 chr1 208875329 208875655 -73318009 - L1PA15 LINE L1 -254 5911 5577 1912 153 7 3 chr1 208875655 208875956 -73317708 + AluSx SINE Alu 1 302 -10 770 299 9 14 chr1 208876452 208876663 -73317001 + MER63A DNA MER1_type 1 210 0 199 327 0 0 chr1 208877112 208877167 -73316497 - L3 LINE CR1 -11 1566 1512 1290 149 0 0 chr1 208877673 208877924 -73315740 - AluSg/x SINE Alu 0 345 95 412 109 0 0 chr1 208877924 208877979 -73315685 - Alu SINE Alu -254 56 2 1989 110 17 0 chr1 208928753 208929043 -73264621 - MER61B-int LTR ERV1 -59 5158 4864 * 12586 140 45 29 chr1 208929021 208932777 -73260887 - MER61B-int LTR ERV1 -373 5522 1361 4808 111 37 63 chr1 208932772 208933436 -73260228 - MER61B-int LTR ERV1 -4004 1213 575 * 1978 144 0 0 chr1 208933436 208933748 -73259916 + AluSx SINE Alu 1 312 0 4808 111 37 63 chr1 208933748 208933955 -73259709 - MER61B-int LTR ERV1 -4642 575 364 307 256 44 22 chr1 208934232 208934322 -73259342 - MER61B-int LTR ERV1 -5125 92 1 2409 147 5 20 chr1 208934330 208934732 -73258932 - MER61B LTR ERV1 -29 396 1 1698 223 105 4 chr1 208934759 208935216 -73258448 - L1MC4 LINE L1 -126 7916 7414 677 271 115 14 chr1 208935215 208935775 -73257889 - L1MC/D LINE L1 -683 5468 4877 * 482 274 150 18 chr1 208936476 208936702 -73256962 - L1MC/D LINE L1 -1873 4273 4018 2229 136 0 0 chr1 208936702 208937010 -73256654 - AluSx SINE Alu -4 308 1 645 308 56 64 chr1 208937177 208937570 -73256094 + LTR16C LTR ERVL 94 483 -8 319 279 17 91 chr1 208937570 208937921 -73255743 - L1MC/D LINE L1 -2159 3987 3663 27 29 0 0 chr1 208938066 208938100 -73255564 + AT_rich Low_complexity Low_complexity 1 34 0 2141 120 0 0 chr1 208938120 208938438 -73255226 - AluSx SINE Alu 0 318 1 1606 165 9 50 chr1 208938444 208938766 -73254898 - AluJb SINE Alu -3 309 1 4869 52 20 3 chr1 208938766 208939778 -73253886 - MER11A LTR ERVK -1 1265 1 1327 176 19 35 chr1 208939921 208940182 -73253482 - AluJb SINE Alu -16 296 40 291 108 57 10 chr1 208940219 208940284 -73253380 + AluJ/FLAM SINE Alu 49 92 -210 247 225 0 0 chr1 208940284 208940324 -73253340 - AluJb SINE Alu -262 40 1 263 271 65 7 chr1 208940324 208940479 -73253185 - L1MC/D LINE L1 -2843 3303 3140 1871 135 3 44 chr1 208940905 208941202 -73252462 + AluSx SINE Alu 1 285 -27 1962 228 67 78 chr1 208943181 208943895 -73249769 + MER72 LTR ERV1 1 706 -16 183 233 120 60 chr1 208944137 208944270 -73249394 + L2 LINE L2 2857 2997 -275 188 338 91 0 chr1 208944349 208944426 -73249238 + L2 LINE L2 3140 3223 -49 843 240 62 5 chr1 208944434 208944626 -73249038 - MER63A DNA MER1_type -7 203 1 519 284 117 38 chr1 208944792 208945031 -73248633 - L3 LINE CR1 -291 1286 1029 237 300 29 50 chr1 208945116 208945256 -73248408 - L3 LINE CR1 -706 871 735 1301 150 5 24 chr1 208945416 208945623 -73248041 - AluJb SINE Alu -24 288 86 198 328 56 50 chr1 208945629 208945827 -73247837 - MIR SINE MIR -56 206 8 384 302 111 23 chr1 208946097 208946269 -73247395 - MIR SINE MIR -16 246 60 219 348 96 9 chr1 208948015 208948130 -73245534 - L2 LINE L2 -8 3264 3140 916 266 198 45 chr1 208948296 208949119 -73244545 + HAL1 LINE L1 2 950 -1557 226 177 18 26 chr1 208949133 208949246 -73244418 + (TA)n Simple_repeat Simple_repeat 1 112 0 325 149 83 24 chr1 208949259 208949427 -73244237 + (TA)n Simple_repeat Simple_repeat 2 179 0 3825 207 75 70 chr1 208949451 208950944 -73242720 + HAL1 LINE L1 973 2472 -35 424 344 189 26 chr1 208951286 208951789 -73241875 + L3 LINE CR1 249 833 -744 753 283 21 0 chr1 208952128 208952319 -73241345 + MIR SINE MIR 3 197 -65 198 71 0 0 chr1 208953503 208953531 -73240133 + (A)n Simple_repeat Simple_repeat 1 28 0 527 114 0 0 chr1 208953747 208953826 -73239838 - L1PA15 LINE L1 -265 5900 5822 959 115 58 46 chr1 208953829 208954003 -73239661 + L1PA15 LINE L1 5989 6164 -1 1071 282 56 121 chr1 208954101 208954657 -73239007 + Charlie1b DNA MER1_type 1 520 -3 21 71 0 0 chr1 208955422 208955464 -73238200 + AT_rich Low_complexity Low_complexity 1 42 0 3023 184 56 35 chr1 208955563 208956330 -73237334 - L1MB7 LINE L1 -8 6176 5394 307 318 166 38 chr1 208956337 208956784 -73236880 - L1M4 LINE L1 -3343 2803 2300 21 36 0 0 chr1 208956858 208956886 -73236778 + AT_rich Low_complexity Low_complexity 1 28 0 336 316 44 0 chr1 208957811 208957947 -73235717 - HERV16 LTR ERVL -4815 181 40 956 262 76 51 chr1 208957958 208958390 -73235274 - LTR16A1 LTR ERVL 0 457 15 462 263 18 53 chr1 208958405 208958431 -73235233 - MIR SINE MIR -16 246 221 1936 132 29 4 chr1 208958431 208958711 -73234953 - AluSx SINE Alu -4 308 22 462 263 18 53 chr1 208958711 208958855 -73234809 - MIR SINE MIR -41 221 82 320 297 131 34 chr1 208959263 208959438 -73234226 - MIR SINE MIR -39 223 32 343 223 96 0 chr1 208960085 208960179 -73233485 + MIR SINE MIR 98 200 -62 2205 264 60 10 chr1 208960711 208961490 -73232174 - L1ME3A LINE L1 -45 6125 5308 729 268 69 29 chr1 208962057 208962494 -73231170 - LTR1B LTR ERV1 -328 498 59 15579 93 52 82 chr1 208962549 208964512 -73229152 + L1PBa LINE L1 1 1845 -5018 5917 35 1 51 chr1 208964512 208965293 -73228371 - L1PA5 LINE L1 -6 6148 5407 15579 93 52 82 chr1 208965293 208966280 -73227384 + L1PBa LINE L1 1845 2861 -4002 304 289 58 29 chr1 208969487 208969591 -73224073 - L2 LINE L2 -6 3266 3160 4802 192 43 13 chr1 208969807 208970735 -73222929 - L1PA4 LINE L1 -3 6152 5382 321 64 0 0 chr1 208970738 208970785 -73222879 - L1MA5 LINE L1 -183 6117 6071 5127 52 41 8 chr1 208970787 208971423 -73222241 + SVA Other Other 730 1386 0 3549 133 22 9 chr1 208971429 208972058 -73221606 - L1MA5 LINE L1 -346 5951 5315 * 26339 116 45 58 chr1 208972050 208978282 -73215382 - L1PA7 LINE L1 -4 6150 12 482 193 50 6 chr1 208978291 208978452 -73215212 - L1MA5 LINE L1 -813 5333 5166 351 293 200 0 chr1 208978493 208978633 -73215031 + MIR SINE MIR 53 220 -42 484 239 172 35 chr1 208978635 208979264 -73214400 + L1ME3 LINE L1 4452 5164 -982 1289 211 90 0 chr1 208979267 208979523 -73214141 + AluJo SINE Alu 1 279 -33 2317 222 89 24 chr1 208979539 208980260 -73213404 + L1ME3 LINE L1 5177 5850 -312 1819 131 122 9 chr1 208980260 208980595 -73213069 - THE1C LTR MaLR -2 373 1 9548 121 29 50 chr1 208980595 208982209 -73211455 - THE1C-int LTR MaLR 0 1580 1 2100 124 65 11 chr1 208982209 208982565 -73211099 - THE1C LTR MaLR 0 375 1 2317 222 89 24 chr1 208982565 208982746 -73210918 + L1ME3 LINE L1 5849 6135 -27 203 200 0 0 chr1 208982749 208982784 -73210880 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 303 0 15 chr1 208982784 208982850 -73210814 + MIR SINE MIR 195 259 -3 * 271 314 46 62 chr1 208982824 208983018 -73210646 - MIR SINE MIR -49 213 23 240 35 0 0 chr1 208983057 208983086 -73210578 + (TC)n Simple_repeat Simple_repeat 2 30 0 33 0 0 0 chr1 208983086 208983119 -73210545 + AT_rich Low_complexity Low_complexity 1 33 0 4674 164 53 20 chr1 208983127 208984137 -73209527 - L1MA6 LINE L1 -2 6298 5255 2111 131 3 13 chr1 208984832 208985137 -73208527 + AluSx SINE Alu 1 302 -10 756 296 149 20 chr1 208985162 208985558 -73208106 - L2 LINE L2 -34 3279 2833 2232 64 0 0 chr1 208985568 208985835 -73207829 - AluY SINE Alu -14 297 31 295 111 0 0 chr1 208985838 208985883 -73207781 + MADE1 DNA Mariner 34 78 -2 556 260 83 11 chr1 208986155 208986336 -73207328 - MIR SINE MIR -38 224 31 403 329 152 36 chr1 208986632 208987133 -73206531 + L2 LINE L2 1527 2085 -1229 609 338 70 50 chr1 208987343 208987888 -73205776 - L2 LINE L2 -338 2976 2421 249 263 53 0 chr1 208987952 208988009 -73205655 - L2 LINE L2 0 3272 3213 338 255 43 11 chr1 208988026 208988120 -73205544 - L2 LINE L2 -963 2351 2255 572 299 128 24 chr1 208988500 208988921 -73204743 + L1ME4a LINE L1 5511 5975 -146 862 302 31 32 chr1 208989009 208989510 -73204154 + MLT1K LTR MaLR 26 585 -3 1030 196 164 7 chr1 208990546 208990826 -73202838 + MLT1C LTR MaLR 143 466 -1 218 273 0 102 chr1 208990846 208990934 -73202730 - MIR SINE MIR -162 100 22 2468 82 0 3 chr1 208990934 208991239 -73202425 - AluSg SINE Alu -6 304 1 4514 119 72 3 chr1 208991397 208992180 -73201484 - Tigger3b DNA MER2_type -393 838 2 310 336 242 33 chr1 208992478 208992928 -73200736 + L2 LINE L2 2434 2977 -337 24 0 0 0 chr1 208993529 208993553 -73200111 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 208994128 208994149 -73199515 + AT_rich Low_complexity Low_complexity 1 21 0 204 364 31 0 chr1 208994578 208994707 -73198957 + (TGGA)n Simple_repeat Simple_repeat 4 136 0 2553 57 0 3 chr1 208995070 208995371 -73198293 + AluSc SINE Alu 1 300 -9 453 197 80 11 chr1 208995483 208995646 -73198018 - MER57A LTR ERV1 0 403 233 844 182 14 0 chr1 208995646 208995789 -73197875 + FRAM SINE Alu 1 141 -35 899 170 26 127 chr1 208996769 208996998 -73196666 - MLT1C LTR MaLR 0 467 185 1623 174 30 25 chr1 208997017 208997380 -73196284 + MLT1A1 LTR MaLR 1 365 0 358 313 21 0 chr1 208997402 208997604 -73196060 - L1ME3 LINE L1 -336 5826 5681 291 293 38 8 chr1 208997641 208997774 -73195890 - Charlie7 DNA MER1_type -1 2611 2475 287 250 22 33 chr1 208997932 208998035 -73195629 - L1ME3 LINE L1 -532 5589 5488 581 235 7 0 chr1 208998055 208998204 -73195460 - L1MC4 LINE L1 -1 8041 7892 1987 180 39 16 chr1 208998224 208998607 -73195057 - MER61B LTR ERV1 -29 396 5 219 278 186 0 chr1 208998849 208998946 -73194718 + L2 LINE L2 2560 2674 -640 1430 247 68 16 chr1 209000114 209000539 -73193125 - MLT1C LTR MaLR 0 467 21 2567 112 31 8 chr1 209000539 209000895 -73192769 + THE1B LTR MaLR 1 364 0 205 256 67 22 chr1 209000927 209001017 -73192647 - MIR SINE MIR -121 141 48 309 285 121 100 chr1 209001293 209001623 -73192041 - L2 LINE L2 -3 3269 2933 306 333 105 38 chr1 209001679 209001946 -73191718 - L2 LINE L2 -475 2839 2555 815 183 69 11 chr1 209002445 209002620 -73191044 - L1MA9 LINE L1 -108 6204 6020 194 281 49 49 chr1 209004079 209004165 -73189499 - MER5B DNA MER1_type 0 189 93 2245 110 0 0 chr1 209004322 209004622 -73189042 + AluY SINE Alu 1 300 -11 6527 111 7 1 chr1 209004648 209005551 -73188113 + L1PA7 LINE L1 8 915 -5546 17844 90 15 3 chr1 209005560 209008735 -73184929 + L1PA7 LINE L1 3147 6362 -107 1050 56 78 7 chr1 209008835 209008977 -73184687 - AluY SINE Alu -159 152 1 299 284 94 8 chr1 209010061 209010188 -73183476 - MIR SINE MIR -1 261 124 2164 147 0 0 chr1 209010980 209011292 -73182372 - AluSx SINE Alu 0 312 1 443 295 66 12 chr1 209011527 209011740 -73181924 + MIR SINE MIR 3 226 -36 2065 133 7 0 chr1 209011927 209012229 -73181435 + AluSq SINE Alu 2 305 -8 196 286 0 0 chr1 209012418 209012460 -73181204 - L2 LINE L2 -11 3261 3220 1139 266 71 25 chr1 209012511 209012876 -73180788 + L1MCb LINE L1 1 382 -5663 7307 167 20 43 chr1 209013229 209013286 -73180378 + L1P3 LINE L1 13 70 -6391 2046 131 23 3 chr1 209013286 209013591 -73180073 + AluSq SINE Alu 1 311 -2 7307 167 20 43 chr1 209013591 209015684 -73177980 + L1P3 LINE L1 70 2175 -4286 2333 135 41 11 chr1 209016159 209016523 -73177141 - THE1C LTR MaLR 0 375 1 9699 127 15 70 chr1 209016527 209018192 -73175472 - THE1C-int LTR MaLR -6 1574 1 2640 114 19 3 chr1 209018192 209018561 -73175103 - THE1C LTR MaLR 0 375 1 370 307 80 13 chr1 209018575 209018800 -73174864 + L1ME LINE L1 5473 5712 -409 3688 81 47 79 chr1 209018885 209019477 -73174187 - L1PA13 LINE L1 -19 6144 5572 324 0 0 0 chr1 209020036 209020072 -73173592 + (T)n Simple_repeat Simple_repeat 1 36 0 980 158 13 0 chr1 209020427 209020585 -73173079 - AluSg/x SINE Alu -6 306 147 248 229 118 1 chr1 209020595 209020673 -73172991 + MIR3 SINE MIR 99 188 -20 286 255 71 50 chr1 209020687 209020828 -73172836 - MER103 DNA DNA -21 145 2 189 0 0 0 chr1 209023502 209023523 -73170141 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 522 207 100 29 chr1 209023715 209023855 -73169809 + MIR SINE MIR 53 202 -60 5188 234 76 21 chr1 209023953 209025405 -73168259 + L2 LINE L2 19 1550 -1764 293 283 40 0 chr1 209025466 209025565 -73168099 - L1ME LINE L1 -383 5738 5636 988 287 160 62 chr1 209026292 209026635 -73167029 + HAL1 LINE L1 68 376 -2131 2159 119 0 25 chr1 209026635 209026953 -73166711 + AluSg SINE Alu 1 310 0 988 287 160 62 chr1 209026953 209027495 -73166169 + HAL1 LINE L1 376 1040 -1467 443 298 82 67 chr1 209027517 209027832 -73165832 - MLT1I LTR MaLR -19 390 71 361 246 18 9 chr1 209027875 209027989 -73165675 + HAL1 LINE L1 1033 1147 -1360 383 143 0 0 chr1 209027989 209028045 -73165619 + Tigger2 DNA MER2_type 1 56 -2662 * 645 289 70 0 chr1 209028039 209028195 -73165469 - MER8 DNA MER2_type -71 168 2 379 325 21 5 chr1 209028548 209028736 -73164928 - L1ME4a LINE L1 -238 5883 5693 789 186 23 0 chr1 209029550 209029679 -73163985 - AluJb SINE Alu -179 133 2 2412 95 0 0 chr1 209029854 209030159 -73163505 - AluSq SINE Alu -8 305 1 287 237 9 97 chr1 209030583 209030697 -73162967 - MLT1H LTR MaLR -12 537 434 295 167 19 19 chr1 209032106 209032160 -73161504 - ERVL LTR ERVL -3239 2525 2472 12761 198 17 19 chr1 209032390 209032946 -73160718 + L1PBa LINE L1 2796 3351 -3511 2027 124 3 7 chr1 209032946 209033261 -73160403 + AluSx SINE Alu 1 314 0 12761 198 17 19 chr1 209033261 209034149 -73159515 + L1PBa LINE L1 3351 4239 -2623 180 0 0 0 chr1 209034149 209034169 -73159495 + (CA)n Simple_repeat Simple_repeat 1 20 0 12761 198 17 19 chr1 209034169 209035599 -73158065 + L1PBa LINE L1 4239 5673 -1189 5078 53 1 28 chr1 209035599 209036282 -73157382 + SVA Other Other 3 667 -719 990 283 63 88 chr1 209036638 209037667 -73155997 + L1MEc LINE L1 509 1507 -4889 1783 182 13 0 chr1 209037667 209037975 -73155689 + AluJb SINE Alu 1 312 0 990 283 63 88 chr1 209037975 209038114 -73155550 + L1MEc LINE L1 1507 1648 -4748 2078 90 54 0 chr1 209038448 209038725 -73154939 - AluSx SINE Alu -20 292 1 251 270 0 14 chr1 209038736 209038810 -73154854 + LTR37B LTR ERV1 58 130 -338 443 264 162 15 chr1 209038927 209039124 -73154540 - L2 LINE L2 -1015 2299 2074 263 136 153 51 chr1 209039124 209039183 -73154481 + Charlie8 DNA MER1_type 2341 2405 -12 363 260 48 130 chr1 209039183 209039452 -73154212 + MIR SINE MIR 16 262 0 633 302 0 11 chr1 209040514 209040693 -73152971 - MER5B DNA MER1_type 0 178 2 2288 236 61 4 chr1 209041112 209041621 -73152043 + MER74A LTR ERVL 1 538 -20 2137 139 158 13 chr1 209041953 209042327 -73151337 - MSTA LTR MaLR 0 428 1 369 273 45 39 chr1 209042937 209043091 -73150573 + MIR SINE MIR 108 262 0 407 249 29 193 chr1 209043211 209043585 -73150079 + L2 LINE L2 2960 3272 0 3613 214 58 23 chr1 209045090 209046070 -73147594 + L1ME1 LINE L1 5164 6162 -4 854 224 107 93 chr1 209046526 209046946 -73146718 + MER34 LTR ERV1 113 538 -4 384 113 16 0 chr1 209047701 209047763 -73145901 + MLT1K LTR MaLR 509 571 -17 252 304 157 23 chr1 209047821 209047973 -73145691 - MIR SINE MIR -16 246 55 1951 149 3 13 chr1 209047973 209048274 -73145390 + AluJb SINE Alu 1 298 -14 252 304 157 23 chr1 209048274 209048338 -73145326 - MIR SINE MIR -207 55 1 586 283 123 40 chr1 209048715 209049015 -73144649 + MER102b DNA MER1_type 1 325 -16 725 283 135 92 chr1 209099699 209100040 -73093624 + HAL1 LINE L1 68 393 -2114 2072 121 0 4 chr1 209100040 209100321 -73093343 + AluSg SINE Alu 1 280 -30 725 283 135 92 chr1 209100321 209100899 -73092765 + HAL1 LINE L1 393 1040 -1467 443 298 82 67 chr1 209100921 209101236 -73092428 - MLT1I LTR MaLR -19 390 71 361 246 18 9 chr1 209101279 209101393 -73092271 + HAL1 LINE L1 1033 1147 -1360 645 250 52 1 chr1 209101393 209101599 -73092065 - MER8 DNA MER2_type 0 239 2 348 316 32 11 chr1 209101952 209102139 -73091525 - L1ME4a LINE L1 -238 5883 5693 789 186 23 0 chr1 209102953 209103082 -73090582 - AluJb SINE Alu -179 133 2 2412 95 0 0 chr1 209103257 209103562 -73090102 - AluSq SINE Alu -8 305 1 301 228 9 97 chr1 209103986 209104100 -73089564 - MLT1H LTR MaLR -12 537 434 2236 323 73 21 chr1 209105510 209107434 -73086230 - HERV16 LTR ERVL -2510 2486 397 366 318 47 0 chr1 209107571 209107719 -73085945 - HERV16 LTR ERVL -4802 194 40 1094 259 76 51 chr1 209107730 209108162 -73085502 - LTR16A1 LTR ERVL 0 457 15 441 263 18 53 chr1 209108177 209108203 -73085461 - MIR SINE MIR -16 246 221 1923 132 29 4 chr1 209108203 209108483 -73085181 - AluSx SINE Alu -4 308 22 441 263 18 53 chr1 209108483 209108627 -73085037 - MIR SINE MIR -41 221 82 306 303 131 34 chr1 209109035 209109210 -73084454 - MIR SINE MIR -39 223 32 331 241 111 0 chr1 209109801 209109909 -73083755 + MIR SINE MIR 81 200 -62 2564 263 59 10 chr1 209110441 209111221 -73082443 - L1ME3A LINE L1 -45 6125 5308 884 266 72 29 chr1 209111788 209112229 -73081435 - LTR1B LTR ERV1 -328 498 53 11738 105 39 15 chr1 209112280 209114048 -73079616 + L1PB1 LINE L1 1 1809 -5054 6342 35 1 51 chr1 209114239 209115022 -73078642 - L1PA5 LINE L1 -4 6150 5407 12973 203 26 15 chr1 209115022 209116489 -73077175 + L1PB1 LINE L1 1795 3245 -3617 2027 124 3 7 chr1 209116489 209116804 -73076860 + AluSx SINE Alu 1 314 0 12973 203 26 15 chr1 209116804 209117692 -73075972 + L1PB1 LINE L1 3245 4122 -2740 180 0 0 0 chr1 209117692 209117712 -73075952 + (CA)n Simple_repeat Simple_repeat 1 20 0 12973 203 26 15 chr1 209117712 209119141 -73074523 + L1PB1 LINE L1 4122 5673 -1189 5616 83 22 28 chr1 209119141 209120012 -73073652 + SVA Other Other 3 868 -518 840 35 0 35 chr1 209120380 209120493 -73073171 + SVA Other Other 1278 1386 0 28 0 0 0 chr1 209120564 209120592 -73073072 + AT_rich Low_complexity Low_complexity 1 28 0 5842 123 32 32 chr1 209120592 209121808 -73071856 + L1PB1 LINE L1 5658 6867 0 186 43 0 0 chr1 209121932 209121955 -73071709 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 319 314 90 16 chr1 209122227 209122415 -73071249 + L1MEc LINE L1 25 226 -6170 638 279 61 108 chr1 209122676 209123705 -73069959 + L1MEc LINE L1 509 1476 -4920 1683 179 14 0 chr1 209123705 209123984 -73069680 + AluJb SINE Alu 1 283 -29 638 279 61 108 chr1 209123984 209124150 -73069514 + L1MEc LINE L1 1476 1648 -4748 2104 117 21 0 chr1 209124478 209124768 -73068896 - AluSg SINE Alu -14 296 1 328 328 47 35 chr1 209125453 209125624 -73068040 - MIR3 SINE MIR 0 208 36 5391 151 38 24 chr1 209125799 209127037 -73066627 - L1MA7 LINE L1 0 6291 5039 2235 101 3 3 chr1 209127052 209127348 -73066316 + AluSc SINE Alu 1 296 -13 1400 173 13 0 chr1 209127350 209127576 -73066088 + MER46A DNA MER2_type 8 236 0 4279 173 32 17 chr1 209127576 209128480 -73065184 - L1MA7 LINE L1 -1106 5040 4123 3544 177 83 10 chr1 209128867 209129681 -73063983 - Charlie5 DNA MER1_type -113 2499 1626 591 81 0 0 chr1 209129982 209130056 -73063608 + Alu SINE Alu 4 77 -232 275 26 0 0 chr1 209130056 209130094 -73063570 - AluY SINE Alu -3 297 260 239 320 149 11 chr1 209130195 209130376 -73063288 - L2 LINE L2 -688 2626 2421 245 263 53 0 chr1 209130440 209130497 -73063167 - L2 LINE L2 0 3272 3213 332 255 43 11 chr1 209130514 209130608 -73063056 - L2 LINE L2 -963 2351 2255 288 290 133 29 chr1 209130988 209131409 -73062255 + L1ME4a LINE L1 5511 5975 -146 992 300 31 32 chr1 209131497 209131998 -73061666 + MLT1K LTR MaLR 26 585 -3 1200 92 37 0 chr1 209132940 209133103 -73060561 - AluSq SINE Alu -10 303 135 5337 166 13 27 chr1 209133211 209134420 -73059244 + L1MB3 LINE L1 4604 5828 -355 2283 101 3 7 chr1 209134420 209134727 -73058937 + AluSx SINE Alu 1 306 -6 5337 166 13 27 chr1 209134727 209135030 -73058634 + L1MB3 LINE L1 5828 6097 -86 2315 193 20 5 chr1 209135030 209135439 -73058225 - MER47B DNA MER2_type 0 418 4 5337 166 13 27 chr1 209135439 209135512 -73058152 + L1MB3 LINE L1 6097 6170 -13 5364 252 231 8 chr1 209135512 209137756 -73055908 - L2 LINE L2 -283 3030 299 413 297 100 39 chr1 209137804 209138033 -73055631 + L2 LINE L2 2826 3068 -245 241 200 0 36 chr1 209138802 209138857 -73054807 + MIR SINE MIR 123 175 -87 2357 180 90 52 chr1 209139277 209139821 -73053843 - MLT1F1 LTR MaLR -2 565 1 204 284 168 21 chr1 209140046 209140141 -73053523 + MIR SINE MIR 154 262 0 479 239 172 43 chr1 209141213 209141422 -73052242 + MIR SINE MIR 26 261 -1 1577 164 26 51 chr1 209141622 209141785 -73051879 - AluJo SINE Alu -8 304 151 2344 109 0 0 chr1 209141785 209142089 -73051575 - AluSq SINE Alu -9 304 1 1577 164 26 51 chr1 209142089 209142237 -73051427 - AluJo SINE Alu -161 151 1 210 295 67 29 chr1 209142840 209142945 -73050719 + MER5A DNA MER1_type 80 188 -1 206 118 0 0 chr1 209143319 209143353 -73050311 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 224 269 30 0 chr1 209144394 209144461 -73049203 + L2 LINE L2 3168 3236 -36 2283 84 3 7 chr1 209147292 209147591 -73046073 - AluSg1 SINE Alu -11 298 1 310 296 10 10 chr1 209147995 209148093 -73045571 - MIR SINE MIR -12 250 153 592 82 5 8 chr1 209148093 209148289 -73045375 + AluY SINE Alu 39 294 -15 383 253 10 10 chr1 209148309 209148408 -73045256 - MIR SINE MIR -108 154 56 991 230 83 0 chr1 209150917 209151147 -73042517 + MIR SINE MIR 8 256 -6 6659 68 9 5 chr1 209151169 209152801 -73040863 - L1PA10 LINE L1 -9 6159 4524 673 279 80 18 chr1 209153448 209153674 -73039990 - MIR SINE MIR -11 251 12 483 293 74 26 chr1 209155069 209155298 -73038366 + MIR SINE MIR 23 262 0 785 282 78 29 chr1 209155690 209155935 -73037729 + MIR SINE MIR 1 257 -5 252 300 0 0 chr1 209156692 209156752 -73036912 - MIR3 SINE MIR -30 178 119 183 167 0 0 chr1 209156773 209156803 -73036861 - L2 LINE L2 0 3272 3243 591 267 70 62 chr1 209156807 209157065 -73036599 - MER112 DNA MER1_type 0 260 1 1695 142 30 30 chr1 209157104 209157406 -73036258 + AluJo SINE Alu 1 302 -10 533 226 6 17 chr1 209157427 209157608 -73036056 + GA-rich Low_complexity Low_complexity 2 180 0 227 83 14 83 chr1 209157615 209157687 -73035977 + (GGGGA)n Simple_repeat Simple_repeat 4 70 0 653 236 74 94 chr1 209157895 209158234 -73035430 + L2 LINE L2 2884 3215 -98 282 296 14 0 chr1 209158246 209158317 -73035347 + CT-rich Low_complexity Low_complexity 3 74 0 285 29 0 0 chr1 209158321 209158355 -73035309 + (TC)n Simple_repeat Simple_repeat 1 34 0 307 244 39 0 chr1 209158358 209158436 -73035228 + L2 LINE L2 3225 3305 -8 983 297 67 95 chr1 209158447 209159422 -73034242 - L2 LINE L2 -613 2701 1755 877 273 111 18 chr1 209159523 209159856 -73033808 + LTR16A LTR ERVL 9 372 -78 312 394 70 26 chr1 209159907 209160209 -73033455 + L3 LINE CR1 849 1163 -414 421 278 120 48 chr1 209160288 209160497 -73033167 - MIR SINE MIR -17 245 22 4091 105 40 11 chr1 209160523 209161150 -73032514 - Tigger4(Zombi) DNA MER2_type -1 2730 2086 1072 145 0 0 chr1 209161147 209161306 -73032358 - Tigger4(Zombi) DNA MER2_type -2571 160 2 * 1074 262 138 19 chr1 209161767 209162187 -73031477 + LTR38 LTR ERV1 87 556 0 282 282 0 0 chr1 209163436 209163507 -73030157 + C-rich Low_complexity Low_complexity 5 75 0 436 141 0 14 chr1 209163631 209163702 -73029962 - AluS SINE Alu -241 72 3 1907 139 3 0 chr1 209163796 209164083 -73029581 - AluSq SINE Alu -25 288 1 21 0 0 0 chr1 209164084 209164105 -73029559 + AT_rich Low_complexity Low_complexity 1 21 0 213 314 133 19 chr1 209164504 209164609 -73029055 - L2 LINE L2 0 3313 3197 423 267 53 0 chr1 209164615 209164765 -73028899 + MER103 DNA DNA 7 164 -2 2132 111 16 0 chr1 209164814 209165120 -73028544 - AluSq SINE Alu -2 311 1 277 324 86 0 chr1 209167126 209167231 -73026433 + MIR SINE MIR 8 121 -141 204 300 132 27 chr1 209167861 209168081 -73025583 - L2 LINE L2 -220 3052 2810 1508 122 0 0 chr1 209168233 209168446 -73025218 - AluJb SINE Alu -15 297 85 443 348 135 0 chr1 209168680 209168910 -73024754 - MIR SINE MIR 0 262 2 800 188 47 0 chr1 209169161 209169331 -73024333 + L1MC3 LINE L1 7595 7772 -13 309 256 66 41 chr1 209170161 209170282 -73023382 + L1MCa LINE L1 1941 2064 -4362 * 360 252 0 56 chr1 209170211 209170318 -73023346 - L1MC4 LINE L1 -1339 6703 6603 1958 114 10 3 chr1 209170982 209171280 -73022384 + AluSg SINE Alu 1 300 -10 315 177 14 170 chr1 209173002 209173149 -73020515 + MER102b DNA MER1_type 203 326 -15 231 288 0 88 chr1 209173268 209173348 -73020316 - L2 LINE L2 0 3272 3200 532 292 91 76 chr1 209173598 209174047 -73019617 + L2 LINE L2 2812 3267 -5 451 262 28 7 chr1 209174584 209174725 -73018939 + L1ME2 LINE L1 6020 6163 -1 185 273 0 0 chr1 209174726 209174770 -73018894 - L2 LINE L2 -20 3293 3250 2303 177 38 36 chr1 209174782 209175254 -73018410 + L1 LINE L1 3996 4471 -1675 1842 157 6 10 chr1 209175254 209175566 -73018098 + AluSx SINE Alu 1 311 -1 2303 177 38 36 chr1 209175566 209175646 -73018018 + L1 LINE L1 4471 4549 -1597 2002 66 35 0 chr1 209175830 209176089 -73017575 - AluY SINE Alu -13 298 31 311 111 0 0 chr1 209176092 209176137 -73017527 + MADE1 DNA Mariner 34 78 -2 566 254 83 11 chr1 209176409 209176590 -73017074 - MIR SINE MIR -38 224 31 379 329 152 36 chr1 209176886 209177387 -73016277 + L2 LINE L2 1527 2085 -1229 411 353 60 56 chr1 209177597 209178079 -73015585 - L2 LINE L2 -338 2976 2493 343 66 0 33 chr1 209178211 209178272 -73015392 + (TGGGGG)n Simple_repeat Simple_repeat 6 64 0 688 217 57 0 chr1 209179003 209179160 -73014504 - MIR SINE MIR -82 180 15 1545 142 75 8 chr1 209179628 209179896 -73013768 + AluSx SINE Alu 1 286 -26 228 318 45 36 chr1 209180236 209180346 -73013318 - MIR3 SINE MIR -12 196 86 304 274 60 0 chr1 209181092 209181176 -73012488 + L2 LINE L2 2943 3031 -241 2170 110 0 0 chr1 209181733 209182034 -73011630 - AluSq SINE Alu -12 301 1 216 182 0 0 chr1 209182079 209182123 -73011541 + GA-rich Low_complexity Low_complexity 4 47 0 191 253 228 0 chr1 209182125 209182204 -73011460 + MER5A DNA MER1_type 74 170 -19 312 256 136 11 chr1 209187048 209187171 -73006493 - MIR SINE MIR -64 144 23 686 274 101 9 chr1 209187366 209187585 -73006079 + MIR SINE MIR 24 262 0 846 282 46 1 chr1 209188344 209188679 -73004985 - MLT1J1 LTR MaLR 0 446 68 1000 223 60 9 chr1 209189380 209189613 -73004051 + MIR SINE MIR 18 262 0 2384 260 102 32 chr1 209189783 209190845 -73002819 - L2 LINE L2 -6 3307 2149 2391 77 0 0 chr1 209190845 209191143 -73002521 + AluSc SINE Alu 1 298 -11 2384 260 102 32 chr1 209191143 209191214 -73002450 - L2 LINE L2 -1164 2149 2084 271 272 114 114 chr1 209191187 209191433 -73002231 + L3 LINE CR1 291 536 -1041 * 1025 347 39 15 chr1 209191493 209191954 -73001710 + L3 LINE CR1 678 1149 -428 254 300 210 13 chr1 209191963 209192196 -73001468 + L2 LINE L2 2614 2892 -422 217 220 0 0 chr1 209192456 209192506 -73001158 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 192 339 0 0 chr1 209192749 209192808 -73000856 + L3 LINE CR1 1169 1227 -350 195 316 18 0 chr1 209192877 209192934 -73000730 + L3 LINE CR1 1516 1573 -4 254 224 0 0 chr1 209194373 209194422 -72999242 + L2 LINE L2 3257 3305 -8 309 26 0 0 chr1 209195002 209195040 -72998624 + (CA)n Simple_repeat Simple_repeat 1 38 0 5379 166 12 37 chr1 209195040 209196359 -72997305 - L1P5 LINE L1 -378 5776 4519 2051 142 3 0 chr1 209196359 209196670 -72996994 - AluSx SINE Alu 0 312 1 5379 166 12 37 chr1 209196670 209197056 -72996608 - L1P5 LINE L1 -1635 4519 4125 303 345 9 0 chr1 209197257 209197373 -72996291 + L2 LINE L2 3197 3313 0 220 217 0 0 chr1 209198480 209198526 -72995138 + GA-rich Low_complexity Low_complexity 4 49 0 237 269 0 0 chr1 209198536 209198588 -72995076 - MIR SINE MIR -15 247 196 425 236 80 75 chr1 209198621 209198820 -72994844 - L1ME3A LINE L1 -8 6162 5963 442 186 46 125 chr1 209198877 209198906 -72994758 - L1M4 LINE L1 -1375 4771 4741 2007 116 0 20 chr1 209198906 209199200 -72994464 - AluSx SINE Alu -22 290 3 442 186 46 125 chr1 209199200 209199241 -72994423 - L1M4 LINE L1 -1405 4741 4698 2448 63 0 0 chr1 209199241 209199544 -72994120 - AluY SINE Alu 0 311 9 442 186 46 125 chr1 209199544 209199767 -72993897 - L1M4 LINE L1 -1448 4698 4507 698 280 82 13 chr1 209199819 209200208 -72993456 - L1ME LINE L1 -3352 2728 2313 412 191 0 11 chr1 209200221 209200310 -72993354 - L1MA9 LINE L1 -38 6274 6187 302 270 68 0 chr1 209200341 209200415 -72993249 - L1MC4 LINE L1 -1339 6703 6625 * 319 202 11 116 chr1 209200398 209200509 -72993155 + L1MC4 LINE L1 6565 6646 -1139 319 280 46 34 chr1 209200723 209200913 -72992751 - L1ME LINE L1 -4572 1689 1503 1496 161 53 13 chr1 209200913 209201212 -72992452 + AluJo SINE Alu 1 311 -1 319 280 46 34 chr1 209201212 209201741 -72991923 - L1ME LINE L1 -4758 1503 799 698 292 48 36 chr1 209201767 209202232 -72991432 + LTR33 LTR ERVL 9 521 0 27 49 0 0 chr1 209202369 209202410 -72991254 + AT_rich Low_complexity Low_complexity 1 41 0 986 137 0 0 chr1 209202427 209202566 -72991098 - AluJo SINE Alu -173 139 1 408 349 170 30 chr1 209203636 209204201 -72989463 + L2 LINE L2 2332 2975 -339 1984 138 0 0 chr1 209204323 209204605 -72989059 + AluSx SINE Alu 21 302 -10 23 68 0 0 chr1 209204838 209204882 -72988782 + AT_rich Low_complexity Low_complexity 1 44 0 600 266 106 118 chr1 209205604 209205798 -72987866 + MLT1G1 LTR MaLR 1 196 -399 1781 143 0 45 chr1 209205798 209205943 -72987721 + AluSx SINE Alu 1 128 -184 2586 62 0 0 chr1 209205943 209206247 -72987417 + AluY SINE Alu 1 304 -7 1781 143 0 45 chr1 209206247 209206387 -72987277 + AluSx SINE Alu 128 273 -39 600 266 106 118 chr1 209206387 209206794 -72986870 + MLT1G1 LTR MaLR 196 595 0 208 287 149 0 chr1 209207697 209207791 -72985873 + MIR SINE MIR 32 139 -123 624 269 80 5 chr1 209208145 209208346 -72985318 - MIR SINE MIR 0 262 47 2001 162 0 0 chr1 209208347 209208656 -72985008 - AluSx SINE Alu -3 309 1 2286 102 3 16 chr1 209208732 209209035 -72984629 - AluSq SINE Alu -14 299 1 4931 119 72 3 chr1 209209194 209209977 -72983687 - Tigger3b DNA MER2_type -393 838 2 277 330 245 39 chr1 209210292 209210725 -72982939 + L2 LINE L2 2456 2977 -337 24 0 0 0 chr1 209211327 209211351 -72982313 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 209212321 209212342 -72981322 + AT_rich Low_complexity Low_complexity 1 21 0 204 364 31 0 chr1 209212771 209212900 -72980764 + (TGGA)n Simple_repeat Simple_repeat 4 136 0 2571 53 0 3 chr1 209213263 209213563 -72980101 + AluSc SINE Alu 1 299 -10 490 189 78 59 chr1 209213675 209213828 -72979836 - MER57A LTR ERV1 0 403 248 835 182 14 0 chr1 209213838 209213981 -72979683 + FRAM SINE Alu 1 141 -35 978 170 26 127 chr1 209214961 209215190 -72978474 - MLT1C LTR MaLR 0 467 185 1786 176 30 25 chr1 209215209 209215572 -72978092 + MLT1A1 LTR MaLR 1 365 0 418 300 126 9 chr1 209215573 209215796 -72977868 - L1MC4a LINE L1 -241 5929 5681 334 301 38 8 chr1 209215833 209215966 -72977698 - Charlie7 DNA MER1_type -1 2611 2475 321 243 5 54 chr1 209216124 209216252 -72977412 - L1MC4a LINE L1 -532 5589 5466 * 568 230 14 0 chr1 209216247 209216395 -72977269 - L1MC4 LINE L1 -1 8041 7892 2428 143 23 13 chr1 209216415 209216807 -72976857 - MER61B LTR ERV1 -29 396 1 29089 99 68 50 chr1 209216807 209221369 -72972295 - MER61B-int LTR ERV1 0 5217 566 2073 130 0 0 chr1 209221369 209221681 -72971983 + AluSx SINE Alu 1 312 0 29089 99 68 50 chr1 209221681 209221888 -72971776 - MER61B-int LTR ERV1 -4651 566 364 321 244 44 22 chr1 209222165 209222255 -72971409 - MER61B-int LTR ERV1 -5125 92 1 2409 147 5 20 chr1 209222263 209222665 -72970999 - MER61B LTR ERV1 -29 396 1 1698 223 105 4 chr1 209222692 209223149 -72970515 - L1MC4 LINE L1 -126 7916 7414 391 263 100 17 chr1 209223148 209223536 -72970128 - L1MC4a LINE L1 -683 5468 5078 * 549 291 113 61 chr1 209223600 209224523 -72969141 - L1MC4a LINE L1 -1158 4988 4018 2229 136 0 0 chr1 209224523 209224831 -72968833 - AluSx SINE Alu -4 308 1 645 308 56 64 chr1 209224998 209225391 -72968273 + LTR16C LTR ERVL 94 483 -8 319 279 17 91 chr1 209225391 209225742 -72967922 - L1MC4a LINE L1 -2159 3987 3663 27 29 0 0 chr1 209225887 209225921 -72967743 + AT_rich Low_complexity Low_complexity 1 34 0 2141 120 0 0 chr1 209225941 209226259 -72967405 - AluSx SINE Alu 0 318 1 1621 161 9 50 chr1 209226265 209226587 -72967077 - AluJb SINE Alu -3 309 1 4830 52 21 3 chr1 209226587 209227598 -72966066 - MER11A LTR ERVK -1 1265 1 1327 176 19 35 chr1 209227741 209228002 -72965662 - AluJb SINE Alu -16 296 40 291 108 57 10 chr1 209228039 209228104 -72965560 + AluJ/FLAM SINE Alu 49 92 -210 247 225 0 0 chr1 209228104 209228144 -72965520 - AluJb SINE Alu -263 40 1 1871 135 3 44 chr1 209228725 209229022 -72964642 + AluSx SINE Alu 1 285 -27 36 0 0 0 chr1 209230662 209230698 -72962966 + AT_rich Low_complexity Low_complexity 1 36 0 1620 128 0 0 chr1 209231377 209231596 -72962068 - AluSx SINE Alu -93 219 1 5039 178 42 12 chr1 209231596 209233295 -72960369 + L1MA9 LINE L1 4530 6274 -38 188 244 0 0 chr1 209233319 209233364 -72960300 - MIR SINE MIR 0 262 218 * 271 167 8 222 chr1 209233332 209233458 -72960206 - L2 LINE L2 -19 3294 3196 274 257 223 42 chr1 209235617 209235764 -72957900 + MIR SINE MIR 19 181 -57 1996 149 3 3 chr1 209238135 209238437 -72955227 + AluSx SINE Alu 1 302 -10 1911 112 0 4 chr1 209238439 209238706 -72954958 + AluY SINE Alu 41 306 -5 24 0 0 0 chr1 209238711 209238735 -72954929 + AT_rich Low_complexity Low_complexity 1 24 0 2079 104 0 0 chr1 209238735 209239003 -72954661 + AluSc SINE Alu 33 300 -9 406 267 50 43 chr1 209239116 209239277 -72954387 - MER117 DNA MER1_type -20 177 16 2174 126 7 3 chr1 209240251 209240561 -72953103 - AluSp SINE Alu -2 311 1 764 135 17 67 chr1 209241354 209241409 -72952255 + L1MB7 LINE L1 5947 6003 -181 2616 119 11 16 chr1 209241409 209241786 -72951878 + THE1C LTR MaLR 1 375 0 764 135 17 67 chr1 209241786 209241908 -72951756 + L1MB7 LINE L1 6003 6115 -69 477 327 36 6 chr1 209242419 209242587 -72951077 + MIR3 SINE MIR 21 193 -15 1695 185 12 15 chr1 209243648 209243978 -72949686 + L1MB7 LINE L1 5856 6184 0 463 266 154 11 chr1 209244340 209244518 -72949146 - MIR SINE MIR -56 206 7 685 166 228 37 chr1 209245453 209245694 -72947970 + MER5C DNA MER1_type 38 324 0 2251 105 0 0 chr1 209245994 209246305 -72947359 + AluSx SINE Alu 1 311 0 720 175 0 9 chr1 209247269 209247383 -72946281 + FLAM_C SINE Alu 2 114 -29 389 305 0 0 chr1 209247402 209247507 -72946157 + L1M4 LINE L1 3503 3607 -2539 255 306 92 0 chr1 209247523 209247621 -72946043 - L2 LINE L2 -296 2976 2870 838 253 47 16 chr1 209247852 209248105 -72945559 - MIR SINE MIR 0 262 2 2468 87 3 0 chr1 209248156 209248465 -72945199 - AluSg SINE Alu 0 310 1 389 333 16 0 chr1 209248466 209248589 -72945075 - MER117 DNA MER1_type -72 125 1 283 172 16 31 chr1 209248718 209248782 -72944882 + MER5B DNA MER1_type 116 178 0 1948 143 3 32 chr1 209249537 209249711 -72943953 - AluSx SINE Alu -7 305 142 2120 130 3 13 chr1 209249711 209250026 -72943638 - AluSx SINE Alu 0 312 1 1948 143 3 32 chr1 209250026 209250165 -72943499 - AluSx SINE Alu -170 142 1 307 234 0 6 chr1 209253444 209253523 -72940141 - MIR SINE MIR -62 146 74 2336 112 0 0 chr1 209254909 209255214 -72938450 + AluSx SINE Alu 1 305 -7 689 255 18 6 chr1 209255427 209255629 -72938035 + MIR SINE MIR 58 261 -1 452 243 69 7 chr1 209256122 209256266 -72937398 - MIR SINE MIR -34 228 76 181 319 57 35 chr1 209306674 209306815 -72886849 + L3 LINE CR1 1149 1292 -285 241 221 0 23 chr1 209306891 209306977 -72886687 + GA-rich Low_complexity Low_complexity 3 86 0 322 222 0 56 chr1 209306980 209307070 -72886594 - MIR SINE MIR -9 253 169 425 291 8 8 chr1 209308304 209308421 -72885243 - MIR SINE MIR -138 124 8 220 271 82 24 chr1 209308546 209308631 -72885033 - L2 LINE L2 -7 3265 3176 186 200 93 53 chr1 209308857 209308932 -72884732 + MIR3 SINE MIR 11 88 -120 228 238 0 0 chr1 209309240 209309303 -72884361 + (TA)n Simple_repeat Simple_repeat 1 63 0 24 0 0 0 chr1 209310001 209310025 -72883639 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 209310997 209311018 -72882646 + AT_rich Low_complexity Low_complexity 1 21 0 204 364 31 0 chr1 209311447 209311576 -72882088 + (TGGA)n Simple_repeat Simple_repeat 4 136 0 2594 53 0 3 chr1 209311939 209312239 -72881425 + AluSc SINE Alu 1 299 -10 482 189 78 59 chr1 209312351 209312504 -72881160 - MER57A LTR ERV1 0 403 248 844 182 14 0 chr1 209312514 209312657 -72881007 + FRAM SINE Alu 1 141 -35 978 170 26 127 chr1 209313637 209313866 -72879798 - MLT1C LTR MaLR 0 467 185 1668 176 30 25 chr1 209313885 209314248 -72879416 + MLT1A1 LTR MaLR 1 365 0 394 300 126 9 chr1 209314249 209314472 -72879192 - L1MC4a LINE L1 -241 5929 5681 322 301 38 8 chr1 209314509 209314642 -72879022 - Charlie7 DNA MER1_type -1 2611 2475 316 243 5 54 chr1 209314800 209314928 -72878736 - L1MC4a LINE L1 -532 5589 5466 * 570 235 7 0 chr1 209314923 209315072 -72878592 - L1MC4 LINE L1 -1 8041 7892 2448 143 23 13 chr1 209315092 209315484 -72878180 - MER61B LTR ERV1 -29 396 1 28958 99 68 50 chr1 209315484 209320047 -72873617 - MER61B-int LTR ERV1 0 5217 566 2092 130 0 0 chr1 209320047 209320359 -72873305 + AluSx SINE Alu 1 312 0 28958 99 68 50 chr1 209320359 209320566 -72873098 - MER61B-int LTR ERV1 -4651 566 364 320 244 44 22 chr1 209320843 209320933 -72872731 - MER61B-int LTR ERV1 -5125 92 1 2428 147 5 20 chr1 209320941 209321343 -72872321 - MER61B LTR ERV1 -29 396 1 1661 223 105 4 chr1 209321370 209321827 -72871837 - L1MC4 LINE L1 -126 7916 7414 473 278 120 49 chr1 209321826 209323201 -72870463 - L1MC4a LINE L1 -683 5468 4018 * 2243 136 0 0 chr1 209323201 209323509 -72870155 - AluSx SINE Alu -4 308 1 644 308 56 64 chr1 209323676 209324069 -72869595 + LTR16C LTR ERVL 94 483 -8 290 279 17 91 chr1 209324069 209324420 -72869244 - L1MC4a LINE L1 -2159 3987 3663 27 29 0 0 chr1 209324565 209324599 -72869065 + AT_rich Low_complexity Low_complexity 1 34 0 184 29 29 29 chr1 209324619 209324653 -72869011 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 338 113 0 32 chr1 209324762 209324824 -72868840 + (GGGGA)n Simple_repeat Simple_repeat 1 60 0 1057 257 141 21 chr1 209326073 209326493 -72867171 - MER61B LTR ERV1 0 556 87 1076 145 0 0 chr1 209326954 209327113 -72866551 + Tigger4(Zombi) DNA MER2_type 2 160 -2571 * 4121 105 40 11 chr1 209327110 209327737 -72865927 + Tigger4(Zombi) DNA MER2_type 2086 2730 -1 363 252 12 12 chr1 209327763 209327867 -72865797 + MIR SINE MIR 22 127 -81 224 373 80 30 chr1 209328051 209328351 -72865313 - L3 LINE CR1 -414 1163 849 896 267 111 18 chr1 209328402 209328735 -72864929 - LTR16A LTR ERVL -78 372 9 701 299 67 95 chr1 209328836 209329811 -72863853 + L2 LINE L2 1755 2701 -613 284 234 16 0 chr1 209329829 209329893 -72863771 - L2 LINE L2 -15 3298 3234 314 45 23 0 chr1 209329893 209329937 -72863727 + (GA)n Simple_repeat Simple_repeat 2 46 0 282 296 14 0 chr1 209329941 209330012 -72863652 + GA-rich Low_complexity Low_complexity 3 74 0 489 250 138 67 chr1 209330024 209330490 -72863174 - L2 LINE L2 -98 3215 2727 273 295 76 9 chr1 209330499 209330604 -72863060 - L2 LINE L2 0 3313 3202 811 212 14 108 chr1 209330604 209330791 -72862873 + L1MB3 LINE L1 3005 3131 -3015 2390 100 3 0 chr1 209330791 209331091 -72862573 + AluSx SINE Alu 1 301 -11 811 212 14 108 chr1 209331091 209331328 -72862336 + L1MB3 LINE L1 3131 3389 -2757 2611 50 0 0 chr1 209331341 209331638 -72862026 + AluY SINE Alu 1 297 -14 1983 127 3 3 chr1 209331874 209332182 -72861482 + AluSx SINE Alu 1 308 0 5293 179 15 25 chr1 209332215 209333769 -72859895 + L1MB3 LINE L1 4256 5824 -359 2298 101 3 7 chr1 209333769 209334076 -72859588 + AluSx SINE Alu 1 306 -6 5293 179 15 25 chr1 209334076 209334379 -72859285 + L1MB3 LINE L1 5824 6098 -85 2190 198 17 2 chr1 209334379 209334788 -72858876 - MER47B DNA MER2_type 0 418 4 5293 179 15 25 chr1 209334788 209334861 -72858803 + L1MB3 LINE L1 6098 6170 -13 4727 257 221 8 chr1 209334861 209337105 -72856559 - L2 LINE L2 -283 3030 299 346 319 87 26 chr1 209337153 209337382 -72856282 + L2 LINE L2 2826 3068 -245 343 66 0 33 chr1 209337565 209337626 -72856038 + (TGGGGG)n Simple_repeat Simple_repeat 6 64 0 625 217 57 0 chr1 209338357 209338514 -72855150 - MIR SINE MIR -82 180 15 1655 142 75 8 chr1 209338982 209339250 -72854414 + AluSx SINE Alu 1 286 -26 185 318 45 36 chr1 209339590 209339700 -72853964 - MIR3 SINE MIR -12 196 86 275 274 60 0 chr1 209340446 209340530 -72853134 + L2 LINE L2 2943 3031 -241 2294 110 0 0 chr1 209341087 209341388 -72852276 - AluSq SINE Alu -12 301 1 216 182 0 0 chr1 209341433 209341477 -72852187 + GA-rich Low_complexity Low_complexity 4 47 0 312 230 62 44 chr1 209345594 209345707 -72847957 - MIR SINE MIR 0 262 148 192 40 0 0 chr1 209345750 209345775 -72847889 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 245 29 29 0 chr1 209345774 209345808 -72847856 + (TA)n Simple_repeat Simple_repeat 2 36 0 1848 142 61 7 chr1 209345836 209346131 -72847533 + AluJb SINE Alu 1 311 -1 270 292 21 0 chr1 209346144 209346240 -72847424 - MIR SINE MIR -133 129 32 541 179 52 45 chr1 209346316 209346450 -72847214 - MLT2E LTR ERVL -20 608 474 1114 257 41 27 chr1 209346520 209346812 -72846852 - MLT2E LTR ERVL -314 314 19 894 220 12 7 chr1 209346826 209347183 -72846481 - MSTD LTR MaLR 0 396 4 982 201 70 116 chr1 209347785 209348173 -72845491 - MLT1A2 LTR MaLR -4 370 1 309 271 24 0 chr1 209348484 209348569 -72845095 - L2 LINE L2 -2 3270 3184 1887 177 8 30 chr1 209348584 209348957 -72844707 + MLT1A1 LTR MaLR 1 365 0 252 122 0 0 chr1 209349336 209349377 -72844287 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 1906 154 21 0 chr1 209349379 209349659 -72844005 - AluJb SINE Alu -26 286 1 210 37 0 0 chr1 209349676 209349703 -72843961 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1614 117 31 0 chr1 209349877 209350100 -72843564 + MER30 DNA MER1_type 1 230 0 217 370 60 0 chr1 209350820 209350920 -72842744 + L2 LINE L2 3145 3250 -22 750 239 44 4 chr1 209351498 209351719 -72841945 + MIR SINE MIR 30 259 -3 2324 97 3 3 chr1 209352221 209352521 -72841143 - AluSg SINE Alu -10 300 1 313 222 0 67 chr1 209352832 209352876 -72840788 - HsTC2 DNA Tc2 -1811 87 50 813 256 92 67 chr1 209352876 209353322 -72840342 - LTR16A1 LTR ERVL 0 457 1 313 222 0 67 chr1 209353322 209353367 -72840297 - HsTC2 DNA Tc2 -1848 50 4 300 287 41 33 chr1 209353751 209353873 -72839791 - L2 LINE L2 -508 2806 2684 882 250 75 38 chr1 209353969 209354298 -72839366 - MLT1B LTR MaLR 0 390 109 2018 121 69 36 chr1 209354298 209354661 -72839003 - THE1C LTR MaLR 0 375 1 882 250 75 38 chr1 209354661 209354775 -72838889 - MLT1B LTR MaLR -281 109 1 1613 180 7 7 chr1 209355315 209355610 -72838054 + AluJo SINE Alu 13 307 -5 24 67 0 0 chr1 209355678 209355723 -72837941 + AT_rich Low_complexity Low_complexity 1 45 0 320 111 19 0 chr1 209356219 209356273 -72837391 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 261 317 15 18 chr1 209356297 209356511 -72837153 - L2 LINE L2 -99 3214 2939 284 262 45 110 chr1 209356511 209356793 -72836871 + L1MC/D LINE L1 5593 5854 -302 649 262 86 49 chr1 209356793 209357037 -72836627 - MLT1J2 LTR MaLR -131 319 67 1270 193 45 4 chr1 209357048 209357291 -72836373 - MLT1D LTR MaLR 0 505 253 353 206 29 0 chr1 209357386 209357454 -72836210 - MER63A DNA MER1_type -43 167 98 283 254 169 8 chr1 209357636 209357766 -72835898 + L2 LINE L2 3163 3313 0 768 180 0 43 chr1 209359550 209359689 -72833975 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr1 209360162 209360182 -72833482 + (A)n Simple_repeat Simple_repeat 1 20 0 1930 173 0 0 chr1 209361091 209361391 -72832273 + AluJo SINE Alu 1 300 -12 803 190 16 5 chr1 209362090 209362274 -72831390 + L1M4 LINE L1 4993 5178 -968 2085 123 0 13 chr1 209362523 209362824 -72830840 + AluSx SINE Alu 1 297 -15 201 239 113 0 chr1 209363044 209363115 -72830549 + MIR SINE MIR 154 232 -30 1540 244 169 33 chr1 209363872 209363909 -72829755 + MER20B DNA MER1_type 1 32 -751 457 221 22 77 chr1 209363909 209364090 -72829574 + MER5B DNA MER1_type 4 174 -4 1540 244 169 33 chr1 209364090 209364713 -72828951 + MER20B DNA MER1_type 32 751 -32 503 288 38 0 chr1 209364848 209365008 -72828656 + MIR SINE MIR 86 251 -11 210 171 0 0 chr1 209365018 209365059 -72828605 + (ATG)n Simple_repeat Simple_repeat 2 42 0 202 337 22 0 chr1 209365928 209366017 -72827647 - L3b LINE CR1 -66 1517 1427 503 283 112 14 chr1 209366071 209366294 -72827370 - MIR SINE MIR -15 247 3 1304 183 32 45 chr1 209366388 209366700 -72826964 - MER33 DNA MER1_type 0 324 17 653 216 99 18 chr1 209367263 209367434 -72826230 - MER5A DNA MER1_type 0 189 5 329 271 10 0 chr1 209369012 209369108 -72824556 + MER94 DNA DNA 4 100 -34 479 279 159 22 chr1 209370413 209370639 -72823025 + MIR SINE MIR 3 259 -3 257 264 100 18 chr1 209370707 209370817 -72822847 - MIR3 SINE MIR -5 203 85 291 287 83 45 chr1 209370872 209371029 -72822635 + MIR SINE MIR 20 182 -80 938 201 124 29 chr1 209372554 209372827 -72820837 + MLT1J1 LTR MaLR 4 302 -144 2169 119 0 0 chr1 209373008 209373293 -72820371 - AluSx SINE Alu -27 285 1 1634 161 9 50 chr1 209373299 209373621 -72820043 - AluJb SINE Alu -3 309 1 4880 52 20 3 chr1 209373621 209374633 -72819031 - MER11A LTR ERVK -1 1265 1 1336 176 19 35 chr1 209374776 209375037 -72818627 - AluJb SINE Alu -16 296 40 294 99 55 10 chr1 209375078 209375139 -72818525 + AluJ/FLAM SINE Alu 49 92 -210 247 225 0 0 chr1 209375139 209375179 -72818485 - AluJb SINE Alu -261 40 1 1893 135 3 44 chr1 209375760 209376057 -72817607 + AluSx SINE Alu 1 285 -27 36 0 0 0 chr1 209377697 209377733 -72815931 + AT_rich Low_complexity Low_complexity 1 36 0 224 200 0 36 chr1 209378707 209378762 -72814902 + MIR SINE MIR 123 175 -87 2275 180 90 52 chr1 209379182 209379726 -72813938 - MLT1F1 LTR MaLR -2 565 1 415 239 172 43 chr1 209381118 209381327 -72812337 + MIR SINE MIR 26 261 -1 1589 164 26 51 chr1 209381527 209381690 -72811974 - AluJo SINE Alu -8 304 151 2360 109 0 0 chr1 209381690 209381994 -72811670 - AluSq SINE Alu -9 304 1 1589 164 26 51 chr1 209381994 209382142 -72811522 - AluJo SINE Alu -161 151 1 184 309 60 12 chr1 209382745 209382829 -72810835 + MER5A DNA MER1_type 80 167 -22 206 118 0 0 chr1 209383223 209383257 -72810407 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 202 269 30 0 chr1 209384298 209384365 -72809299 + L2 LINE L2 3168 3236 -36 2304 84 3 7 chr1 209387196 209387495 -72806169 - AluSg1 SINE Alu -11 298 1 281 296 10 10 chr1 209387899 209387997 -72805667 - MIR SINE MIR -12 250 153 560 86 5 8 chr1 209387997 209388195 -72805469 + AluY SINE Alu 39 299 -13 353 253 10 10 chr1 209388213 209388312 -72805352 - MIR SINE MIR -108 154 56 883 230 83 0 chr1 209390821 209391051 -72802613 + MIR SINE MIR 8 256 -6 6680 68 9 5 chr1 209391073 209392705 -72800959 - L1PA10 LINE L1 -9 6159 4524 577 279 80 18 chr1 209393352 209393578 -72800086 - MIR SINE MIR -11 251 12 393 293 74 26 chr1 209394973 209395202 -72798462 + MIR SINE MIR 23 262 0 683 282 78 29 chr1 209395594 209395839 -72797825 + MIR SINE MIR 1 257 -5 230 300 0 0 chr1 209396596 209396656 -72797008 - MIR3 SINE MIR -30 178 119 598 275 62 54 chr1 209396711 209396969 -72796695 - MER112 DNA MER1_type 0 260 1 1805 142 30 30 chr1 209397008 209397310 -72796354 + AluJo SINE Alu 1 302 -10 533 226 6 17 chr1 209397331 209397512 -72796152 + GA-rich Low_complexity Low_complexity 2 180 0 1063 83 8 0 chr1 209397649 209397782 -72795882 - AluSg SINE Alu -176 134 1 2478 52 16 0 chr1 209399469 209399776 -72793888 + L1P3 LINE L1 5288 5599 -555 4691 59 108 0 chr1 209399776 209400395 -72793269 + L1PA8 LINE L1 5469 6158 -14 244 323 32 32 chr1 209400410 209400565 -72793099 - MER5A DNA MER1_type -28 161 7 1092 199 112 3 chr1 209400905 209401192 -72792472 - MER33 DNA MER1_type -4 320 3 970 193 8 84 chr1 209401232 209401470 -72792194 + MER58B DNA MER1_type 107 326 -15 585 191 115 87 chr1 209402458 209402641 -72791023 - L1MD3 LINE L1 -78 7917 7730 9560 212 30 8 chr1 209402846 209405889 -72787775 - L1MB3 LINE L1 -9 6174 3029 1932 149 0 45 chr1 209405889 209406198 -72787466 + AluSx SINE Alu 1 295 -17 9560 212 30 8 chr1 209406198 209406663 -72787001 - L1MB3 LINE L1 -3154 3029 2576 22 0 0 0 chr1 209406667 209406689 -72786975 + AT_rich Low_complexity Low_complexity 1 22 0 338 328 47 7 chr1 209406745 209406898 -72786766 - MIR SINE MIR -62 146 3 486 198 22 0 chr1 209407349 209407440 -72786224 - MIR3 SINE MIR -9 199 107 344 314 36 117 chr1 209407744 209408053 -72785611 - L2 LINE L2 -2 3270 2987 585 312 108 33 chr1 209408064 209408153 -72785511 - L2 LINE L2 -8 3305 3224 2120 175 70 3 chr1 209408153 209408524 -72785140 + MSTD LTR MaLR 1 396 0 585 312 108 33 chr1 209408524 209408923 -72784741 - L2 LINE L2 -89 3224 2782 183 319 52 60 chr1 209408906 209409022 -72784642 - L2 LINE L2 -278 2994 2880 * 262 294 42 34 chr1 209410145 209410264 -72783400 - MER5A DNA MER1_type -41 148 29 1767 161 47 0 chr1 209411045 209411324 -72782340 + AluJo SINE Alu 1 292 -20 823 248 86 18 chr1 209411757 209411979 -72781685 + MIR SINE MIR 16 252 -10 2122 142 32 67 chr1 209412789 209413077 -72780587 + L1MB3 LINE L1 5768 6038 -145 1949 168 0 0 chr1 209413077 209413387 -72780277 - AluJb SINE Alu 0 312 3 2122 142 32 67 chr1 209413387 209413529 -72780135 + L1MB3 LINE L1 6038 6183 0 287 85 0 51 chr1 209413745 209413804 -72779860 + L1MB3 LINE L1 6128 6183 0 463 244 6 98 chr1 209414280 209414444 -72779220 + MER112 DNA MER1_type 1 149 -111 942 134 0 0 chr1 209414490 209414624 -72779040 - AluSg/x SINE Alu -18 294 161 364 250 0 0 chr1 209414625 209414701 -72778963 + MER112 DNA MER1_type 183 258 -2 1640 186 6 31 chr1 209415515 209415833 -72777831 + AluJb SINE Alu 3 312 0 564 277 23 42 chr1 209416662 209416888 -72776776 - MLT1L LTR MaLR 0 615 288 928 188 87 34 chr1 209417064 209417272 -72776392 - MER20 DNA MER1_type 0 219 1 392 240 76 99 chr1 209417284 209417455 -72776209 + MIR SINE MIR 96 262 0 270 0 0 0 chr1 209419046 209419076 -72774588 + (T)n Simple_repeat Simple_repeat 1 30 0 864 163 0 22 chr1 209419186 209419321 -72774343 + FLAM_C SINE Alu 2 133 0 187 275 176 22 chr1 209420075 209420166 -72773498 + L2 LINE L2 3168 3272 0 2198 86 45 0 chr1 209420366 209420658 -72773006 - AluSc SINE Alu -4 305 1 1948 160 7 0 chr1 209420664 209420958 -72772706 - AluJb SINE Alu -16 296 1 518 296 128 22 chr1 209421063 209421289 -72772375 + MIR SINE MIR 1 250 -12 3345 154 47 37 chr1 209421642 209421994 -72771670 - L1MA9 LINE L1 -5 6307 5945 1851 104 101 8 chr1 209421994 209422262 -72771402 - AluSx SINE Alu -19 293 1 3345 154 47 37 chr1 209422262 209422552 -72771112 - L1MA9 LINE L1 -367 5945 5659 220 294 54 22 chr1 209422562 209422654 -72771010 + L3b LINE CR1 1296 1390 -193 1961 214 131 27 chr1 209422716 209423304 -72770360 - L1ME2 LINE L1 -9 6155 5507 1442 210 50 39 chr1 209423304 209423722 -72769942 - MLT2B1 LTR ERVL 0 414 1 1310 234 79 9 chr1 209423722 209423746 -72769918 - L1ME2 LINE L1 -658 5508 5487 2248 169 119 26 chr1 209423746 209423857 -72769807 + MLT1D LTR MaLR 1 100 -405 1530 166 68 20 chr1 209423857 209424152 -72769512 - AluJo SINE Alu -3 309 1 2248 169 119 26 chr1 209424152 209424502 -72769162 + MLT1D LTR MaLR 100 505 0 1310 234 79 9 chr1 209424502 209424955 -72768709 - L1ME2 LINE L1 -679 5487 5009 2024 118 0 0 chr1 209425088 209425360 -72768304 + AluSx SINE Alu 32 303 -9 213 304 25 13 chr1 209425455 209425534 -72768130 - MIR3 SINE MIR -46 162 83 309 256 136 11 chr1 209427287 209427410 -72766254 - MIR SINE MIR -64 144 23 654 274 101 9 chr1 209427605 209427824 -72765840 + MIR SINE MIR 24 262 0 813 282 46 1 chr1 209428583 209428918 -72764746 - MLT1J1 LTR MaLR 0 446 68 974 223 60 9 chr1 209429619 209429852 -72763812 + MIR SINE MIR 18 262 0 2328 260 102 32 chr1 209430022 209431084 -72762580 - L2 LINE L2 -6 3307 2149 2506 77 0 0 chr1 209431084 209431382 -72762282 + AluSc SINE Alu 1 298 -11 2328 260 102 32 chr1 209431382 209431453 -72762211 - L2 LINE L2 -1164 2149 2084 238 272 114 114 chr1 209431426 209431672 -72761992 + L3 LINE CR1 291 536 -1041 * 977 346 40 16 chr1 209431742 209432193 -72761471 + L3 LINE CR1 688 1149 -428 254 296 210 13 chr1 209432202 209432435 -72761229 + L2 LINE L2 2614 2892 -422 241 310 23 70 chr1 209432578 209432707 -72760957 + L2 LINE L2 3190 3312 -1 185 349 12 12 chr1 209432961 209433047 -72760617 + L3 LINE CR1 1142 1227 -350 186 284 45 15 chr1 209433106 209433173 -72760491 + L3 LINE CR1 1505 1573 -4 241 224 0 0 chr1 209434612 209434661 -72759003 + L2 LINE L2 3257 3305 -8 309 26 0 0 chr1 209435241 209435279 -72758385 + (CA)n Simple_repeat Simple_repeat 1 38 0 5565 164 12 37 chr1 209435279 209436598 -72757066 - L1P5 LINE L1 -378 5776 4519 2186 138 3 0 chr1 209436598 209436909 -72756755 - AluSx SINE Alu 0 312 1 5565 164 12 37 chr1 209436909 209437295 -72756369 - L1P5 LINE L1 -1635 4519 4125 289 345 9 0 chr1 209437496 209437612 -72756052 + L2 LINE L2 3197 3313 0 220 217 0 0 chr1 209438719 209438765 -72754899 + GA-rich Low_complexity Low_complexity 4 49 0 230 269 0 0 chr1 209438775 209438827 -72754837 - MIR SINE MIR -15 247 196 436 236 80 75 chr1 209438860 209439059 -72754605 - L1ME3A LINE L1 -8 6162 5963 476 166 48 135 chr1 209439116 209439145 -72754519 - L1M4 LINE L1 -1375 4771 4741 2116 116 0 20 chr1 209439145 209439439 -72754225 - AluSx SINE Alu -22 290 3 476 166 48 135 chr1 209439439 209439480 -72754184 - L1M4 LINE L1 -1405 4741 4698 2565 63 0 0 chr1 209439480 209439783 -72753881 - AluY SINE Alu 0 311 9 476 166 48 135 chr1 209439783 209440006 -72753658 - L1M4 LINE L1 -1448 4698 4507 761 280 82 13 chr1 209440058 209440447 -72753217 - L1ME LINE L1 -3352 2728 2313 427 191 0 11 chr1 209440460 209440549 -72753115 - L1MA9 LINE L1 -38 6274 6187 363 192 0 0 chr1 209440553 209440626 -72753038 + (TA)n Simple_repeat Simple_repeat 1 73 0 242 202 11 116 chr1 209440637 209440748 -72752916 + L1MC3 LINE L1 6565 6646 -1139 233 204 0 37 chr1 209440706 209440760 -72752904 - L1MC4 LINE L1 -1339 6703 6652 * 308 274 48 51 chr1 209440962 209441152 -72752512 - L1ME LINE L1 -915 1526 1337 1588 156 58 4 chr1 209441152 209441428 -72752236 + AluJo SINE Alu 1 291 -21 308 274 48 51 chr1 209441428 209441980 -72751684 - L1ME LINE L1 -1104 1337 799 683 292 48 36 chr1 209442006 209442471 -72751193 + LTR33 LTR ERVL 9 521 0 27 49 0 0 chr1 209442608 209442649 -72751015 + AT_rich Low_complexity Low_complexity 1 41 0 986 137 0 0 chr1 209442666 209442805 -72750859 - AluJo SINE Alu -173 139 1 21 0 0 0 chr1 209443189 209443210 -72750454 + AT_rich Low_complexity Low_complexity 1 21 0 408 349 170 30 chr1 209443877 209444442 -72749222 + L2 LINE L2 2332 2975 -339 1984 138 0 0 chr1 209444564 209444846 -72748818 + AluSx SINE Alu 21 302 -10 23 68 0 0 chr1 209445079 209445123 -72748541 + AT_rich Low_complexity Low_complexity 1 44 0 600 266 106 118 chr1 209445845 209446039 -72747625 + MLT1G1 LTR MaLR 1 196 -399 1781 143 0 45 chr1 209446039 209446184 -72747480 + AluSx SINE Alu 1 128 -184 2586 62 0 0 chr1 209446184 209446488 -72747176 + AluY SINE Alu 1 304 -7 1781 143 0 45 chr1 209446488 209446628 -72747036 + AluSx SINE Alu 128 273 -39 600 266 106 118 chr1 209446628 209447035 -72746629 + MLT1G1 LTR MaLR 196 595 0 208 287 149 0 chr1 209447938 209448032 -72745632 + MIR SINE MIR 32 139 -123 624 269 80 5 chr1 209448386 209448587 -72745077 - MIR SINE MIR 0 262 47 2001 162 0 0 chr1 209448588 209448897 -72744767 - AluSx SINE Alu -3 309 1 2209 118 0 16 chr1 209448973 209449277 -72744387 - AluSq SINE Alu -14 299 1 21 0 0 0 chr1 209449278 209449299 -72744365 + AT_rich Low_complexity Low_complexity 1 21 0 204 304 137 20 chr1 209449698 209449800 -72743864 - L2 LINE L2 0 3313 3200 429 267 53 0 chr1 209449809 209449959 -72743705 + MER103 DNA DNA 7 164 -2 2240 111 16 0 chr1 209450008 209450314 -72743350 - AluSq SINE Alu -2 311 1 270 324 86 0 chr1 209452321 209452426 -72741238 + MIR SINE MIR 8 121 -141 208 296 132 27 chr1 209453056 209453276 -72740388 - L2 LINE L2 -220 3052 2810 1582 119 0 0 chr1 209453431 209453641 -72740023 - AluJb SINE Alu -18 294 85 423 344 139 0 chr1 209453890 209454105 -72739559 - MIR SINE MIR -16 246 2 826 188 47 0 chr1 209454356 209454526 -72739138 + L1MC3 LINE L1 7595 7772 -13 365 171 8 0 chr1 209455388 209455505 -72738159 + (TA)n Simple_repeat Simple_repeat 1 118 0 1362 311 6 75 chr1 209456177 209456499 -72737165 + AluSg SINE Alu 1 300 -10 311 177 14 170 chr1 209458221 209458368 -72735296 + MER102a DNA MER1_type 192 315 -15 203 288 0 88 chr1 209458487 209458567 -72735097 - L2 LINE L2 0 3272 3200 402 296 91 76 chr1 209458817 209459266 -72734398 + L2 LINE L2 2812 3267 -5 458 262 28 7 chr1 209459803 209459944 -72733720 + L1ME2 LINE L1 6020 6163 -1 5546 188 40 40 chr1 209460001 209460473 -72733191 + L1MA9 LINE L1 3996 4466 -1846 1923 147 7 0 chr1 209460473 209460752 -72732912 + AluSx SINE Alu 1 281 -31 5546 188 40 40 chr1 209460752 209460870 -72732794 + L1MA9 LINE L1 4466 4582 -1730 2081 124 0 0 chr1 209460870 209461145 -72732519 - AluSx SINE Alu -37 275 1 5546 188 40 40 chr1 209461145 209462844 -72730820 + L1MA9 LINE L1 4582 6274 -38 237 167 8 222 chr1 209462881 209463007 -72730657 - L2 LINE L2 -19 3294 3196 235 259 223 42 chr1 209465166 209465313 -72728351 + MIR SINE MIR 19 181 -57 2015 149 3 3 chr1 209467684 209467986 -72725678 + AluSx SINE Alu 1 302 -10 1922 112 0 4 chr1 209467988 209468255 -72725409 + AluY SINE Alu 41 306 -5 24 0 0 0 chr1 209468260 209468284 -72725380 + AT_rich Low_complexity Low_complexity 1 24 0 2092 104 0 0 chr1 209468284 209468552 -72725112 + AluSc SINE Alu 33 300 -9 403 267 50 43 chr1 209468665 209468826 -72724838 - MER117 DNA MER1_type -20 177 16 2186 126 7 3 chr1 209469800 209470110 -72723554 - AluSp SINE Alu -2 311 1 760 135 17 67 chr1 209470903 209470958 -72722706 + L1MB7 LINE L1 5947 6003 -181 2478 119 11 16 chr1 209470958 209471335 -72722329 + THE1C LTR MaLR 1 375 0 760 135 17 67 chr1 209471335 209471457 -72722207 + L1MB7 LINE L1 6003 6115 -69 426 327 36 6 chr1 209471968 209472136 -72721528 + MIR3 SINE MIR 21 193 -15 1599 185 12 15 chr1 209473197 209473527 -72720137 + L1MB7 LINE L1 5856 6184 0 414 267 156 10 chr1 209473889 209474064 -72719600 - MIR SINE MIR -56 206 11 627 166 228 37 chr1 209475002 209475243 -72718421 + MER5C DNA MER1_type 38 324 0 2273 105 0 0 chr1 209475543 209475854 -72717810 + AluSx SINE Alu 1 311 0 671 175 0 9 chr1 209476818 209476932 -72716732 + FLAM_C SINE Alu 2 114 -29 383 305 0 0 chr1 209476951 209477056 -72716608 + L1M4 LINE L1 3503 3607 -2539 222 306 92 0 chr1 209477072 209477170 -72716494 - L2 LINE L2 -296 2976 2870 755 250 48 16 chr1 209477401 209477649 -72716015 - MIR SINE MIR 0 262 7 2486 87 3 0 chr1 209477705 209478014 -72715650 - AluSg SINE Alu 0 310 1 388 333 16 0 chr1 209478015 209478138 -72715526 - MER117 DNA MER1_type -72 125 1 264 183 17 17 chr1 209478267 209478327 -72715337 + MER5B DNA MER1_type 116 175 -3 1958 143 3 32 chr1 209479086 209479260 -72714404 - AluSx SINE Alu -7 305 142 2131 130 3 13 chr1 209479260 209479575 -72714089 - AluSx SINE Alu 0 312 1 1958 143 3 32 chr1 209479575 209479714 -72713950 - AluSx SINE Alu -170 142 1 307 243 0 14 chr1 209482998 209483072 -72710592 - MIR SINE MIR -62 146 74 2336 112 0 0 chr1 209484458 209484763 -72708901 + AluSx SINE Alu 1 305 -7 689 255 18 6 chr1 209484976 209485178 -72708486 + MIR SINE MIR 58 261 -1 467 240 81 47 chr1 209485671 209485883 -72707781 - MIR SINE MIR -34 228 11 238 281 115 0 chr1 209486345 209486441 -72707223 + L2 LINE L2 3204 3310 -3 3678 157 115 1 chr1 209488229 209488892 -72704772 + Tigger2 DNA MER2_type 7 744 -1974 1093 147 28 24 chr1 209488959 209489170 -72704494 + Tigger2 DNA MER2_type 2462 2673 -45 524 117 26 0 chr1 209539446 209539523 -72654141 + MADE1 DNA Mariner 1 79 -1 651 305 21 0 chr1 209539799 209539986 -72653678 + MIR SINE MIR 61 251 -11 229 214 71 14 chr1 209539995 209540065 -72653599 - L1MC4 LINE L1 -1333 6709 6636 214 200 93 53 chr1 209540377 209540452 -72653212 - MIR3 SINE MIR -120 88 11 247 271 82 24 chr1 209540678 209540763 -72652901 + L2 LINE L2 3176 3265 -7 465 291 8 8 chr1 209540888 209541005 -72652659 + MIR SINE MIR 8 124 -138 347 222 0 56 chr1 209542239 209542329 -72651335 + MIR SINE MIR 169 253 -9 220 225 0 25 chr1 209542332 209542412 -72651252 + CT-rich Low_complexity Low_complexity 3 80 0 181 289 0 0 chr1 209542412 209542450 -72651214 - L3 LINE CR1 -103 1474 1437 214 319 57 35 chr1 209542494 209542635 -72651029 - L3 LINE CR1 -285 1292 1149 343 230 62 44 chr1 209543587 209543700 -72649964 - MIR SINE MIR 0 262 148 192 40 0 0 chr1 209543743 209543768 -72649896 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 443 18 18 0 chr1 209543767 209543823 -72649841 + (TA)n Simple_repeat Simple_repeat 1 57 0 1846 142 61 7 chr1 209543851 209544147 -72649517 + AluJb SINE Alu 1 312 0 302 292 21 0 chr1 209544162 209544258 -72649406 - MIR SINE MIR -133 129 32 548 179 52 45 chr1 209544334 209544468 -72649196 - MLT2E LTR ERVL -20 608 474 1115 257 41 27 chr1 209544538 209544830 -72648834 - MLT2E LTR ERVL -314 314 19 895 220 12 7 chr1 209544844 209545201 -72648463 - MSTD LTR MaLR 0 396 4 589 281 29 6 chr1 209545803 209545974 -72647690 - MLT1A2 LTR MaLR -4 370 196 470 262 28 7 chr1 209546347 209546488 -72647176 + L1ME2 LINE L1 6020 6163 -1 183 273 0 0 chr1 209546489 209546533 -72647131 - L2 LINE L2 -20 3293 3250 6212 177 40 24 chr1 209546545 209547017 -72646647 + L1MA9 LINE L1 3996 4459 -1853 1928 153 6 13 chr1 209547017 209547330 -72646334 + AluSx SINE Alu 1 311 -1 6212 177 40 24 chr1 209547330 209547408 -72646256 + L1MA9 LINE L1 4459 4534 -1778 2112 122 14 0 chr1 209547408 209547696 -72645968 - AluSx SINE Alu -20 292 1 6212 177 40 24 chr1 209547696 209549395 -72644269 + L1MA9 LINE L1 4534 6274 -38 188 244 0 0 chr1 209549419 209549464 -72644200 - MIR SINE MIR 0 262 218 * 271 167 8 222 chr1 209549432 209549558 -72644106 - L2 LINE L2 -19 3294 3196 274 257 223 42 chr1 209551717 209551864 -72641800 + MIR SINE MIR 19 181 -57 1198 172 10 5 chr1 209554235 209554438 -72639226 + AluSx SINE Alu 1 204 -108 1693 116 0 4 chr1 209554538 209554779 -72638885 + AluY SINE Alu 68 307 -4 24 0 0 0 chr1 209554784 209554808 -72638856 + AT_rich Low_complexity Low_complexity 1 24 0 2079 104 0 0 chr1 209554808 209555076 -72638588 + AluSc SINE Alu 33 300 -9 406 267 50 43 chr1 209555189 209555350 -72638314 - MER117 DNA MER1_type -20 177 16 2130 135 6 3 chr1 209556327 209556639 -72637025 - AluSp SINE Alu 0 313 1 748 135 17 67 chr1 209557433 209557488 -72636176 + L1MB7 LINE L1 5947 6003 -181 2616 119 11 16 chr1 209557488 209557865 -72635799 + THE1C LTR MaLR 1 375 0 748 135 17 67 chr1 209557865 209557987 -72635677 + L1MB7 LINE L1 6003 6115 -69 477 327 36 6 chr1 209558498 209558666 -72634998 + MIR3 SINE MIR 21 193 -15 1599 185 12 15 chr1 209559727 209560057 -72633607 + L1MB7 LINE L1 5856 6184 0 414 267 156 10 chr1 209560419 209560594 -72633070 - MIR SINE MIR -56 206 11 309 271 24 0 chr1 209561413 209561498 -72632166 - L2 LINE L2 -2 3270 3184 1887 177 8 30 chr1 209561513 209561886 -72631778 + MLT1A1 LTR MaLR 1 365 0 252 122 0 0 chr1 209562265 209562306 -72631358 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 1906 154 21 0 chr1 209562308 209562588 -72631076 - AluJb SINE Alu -26 286 1 210 37 0 0 chr1 209562605 209562632 -72631032 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1614 117 31 0 chr1 209562806 209563029 -72630635 + MER30 DNA MER1_type 1 230 0 217 370 60 0 chr1 209563749 209563849 -72629815 + L2 LINE L2 3145 3250 -22 750 239 44 4 chr1 209564427 209564648 -72629016 + MIR SINE MIR 30 259 -3 1987 128 3 35 chr1 209565150 209565323 -72628341 - AluSx SINE Alu -9 303 143 2149 127 3 13 chr1 209565323 209565638 -72628026 - AluSx SINE Alu 0 312 1 1987 128 3 35 chr1 209565638 209565777 -72627887 - AluSx SINE Alu -169 143 1 307 243 0 14 chr1 209569069 209569143 -72624521 - MIR SINE MIR -62 146 74 2349 109 0 0 chr1 209570527 209570831 -72622833 + AluSx SINE Alu 1 304 -8 689 255 18 6 chr1 209571043 209571245 -72622419 + MIR SINE MIR 58 261 -1 467 240 81 47 chr1 209571738 209571950 -72621714 - MIR SINE MIR -34 228 11 238 281 115 0 chr1 209572412 209572508 -72621156 + L2 LINE L2 3204 3310 -3 2206 152 109 2 chr1 209574296 209574710 -72618954 + Tigger2 DNA MER2_type 7 464 -2254 1297 171 24 20 chr1 209574811 209575063 -72618601 + Tigger2 DNA MER2_type 2465 2717 -1 2360 102 0 0 chr1 209575167 209575470 -72618194 + AluSg SINE Alu 2 304 -6 2260 104 3 0 chr1 209575645 209575944 -72617720 - AluSg SINE Alu -10 300 1 5444 49 80 114 chr1 209577631 209578533 -72615131 + L1PA8 LINE L1 5288 6158 -14 244 323 32 32 chr1 209578548 209578703 -72614961 - MER5A DNA MER1_type -28 161 7 1089 199 112 3 chr1 209579044 209579331 -72614333 - MER33 DNA MER1_type -4 320 3 970 193 8 84 chr1 209579371 209579609 -72614055 + MER58B DNA MER1_type 107 326 -15 615 192 115 82 chr1 209580597 209580779 -72612885 - L1MD3 LINE L1 -78 7917 7730 8919 193 17 5 chr1 209580984 209583734 -72609930 - L1MB3 LINE L1 -9 6174 3395 503 187 165 11 chr1 209584273 209584455 -72609209 + MER5C DNA MER1_type 38 247 -77 671 175 0 9 chr1 209585092 209585206 -72608458 + FLAM_C SINE Alu 2 114 -29 383 305 0 0 chr1 209585225 209585330 -72608334 + L1M4 LINE L1 3503 3607 -2539 222 306 92 0 chr1 209585346 209585444 -72608220 - L2 LINE L2 -296 2976 2870 755 250 48 16 chr1 209585675 209585923 -72607741 - MIR SINE MIR 0 262 7 2486 87 3 0 chr1 209585980 209586289 -72607375 - AluSg SINE Alu 0 310 1 388 333 16 0 chr1 209586290 209586413 -72607251 - MER117 DNA MER1_type -72 125 1 264 183 17 17 chr1 209586542 209586602 -72607062 + MER5B DNA MER1_type 116 175 -3 3835 143 58 19 chr1 209587468 209587807 -72605857 - L1MA4 LINE L1 -393 5907 5583 2018 117 7 17 chr1 209587807 209588097 -72605567 - AluSx SINE Alu -25 287 1 3835 143 58 19 chr1 209588097 209588943 -72604721 - L1MA4 LINE L1 -717 5583 4675 468 217 72 134 chr1 209589116 209589406 -72604258 - L2 LINE L2 -6 3307 3036 2372 60 0 3 chr1 209590186 209590507 -72603157 + AluY SINE Alu 1 320 0 1888 174 0 3 chr1 209590510 209590820 -72602844 + AluJb SINE Alu 1 309 -3 358 259 312 5 chr1 209590887 209591076 -72602588 - MIR SINE MIR -1 261 15 232 26 0 128 chr1 209591126 209591165 -72602499 + HSMAR1 DNA Mariner 1 34 -1253 611 281 199 19 chr1 209591614 209592176 -72601488 + L3 LINE CR1 304 1025 -552 2142 156 56 68 chr1 209592183 209592473 -72601191 + L1MD1 LINE L1 5781 6064 -178 975 176 6 0 chr1 209592473 209592638 -72601026 - FRAM SINE Alu 0 166 1 2142 156 56 68 chr1 209592638 209592815 -72600849 + L1MD1 LINE L1 6064 6242 0 191 297 16 16 chr1 209592949 209593013 -72600651 + L2 LINE L2 3153 3216 -56 983 166 74 0 chr1 209593898 209594061 -72599603 - FAM SINE Alu 0 175 1 2092 139 27 21 chr1 209594499 209594872 -72598792 - THE1C LTR MaLR 0 375 1 180 0 0 0 chr1 209595533 209595553 -72598111 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2120 111 0 0 chr1 209595576 209595891 -72597773 + AluSg1 SINE Alu 1 315 0 318 115 0 0 chr1 209596183 209596235 -72597429 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 264 314 122 19 chr1 209597306 209597462 -72596202 - MIR SINE MIR -80 182 11 355 154 0 41 chr1 209598215 209598338 -72595326 + (CA)n Simple_repeat Simple_repeat 1 118 0 422 151 26 20 chr1 209598351 209598503 -72595161 + (CA)n Simple_repeat Simple_repeat 2 154 0 285 206 42 12 chr1 209598586 209598751 -72594913 + (CA)n Simple_repeat Simple_repeat 1 170 0 2265 94 0 3 chr1 209599594 209599891 -72593773 + AluSc SINE Alu 1 296 -13 189 195 0 0 chr1 209600151 209600192 -72593472 + (CACCAT)n Simple_repeat Simple_repeat 4 44 0 205 281 16 0 chr1 209601124 209601188 -72592476 - MER5B DNA MER1_type 0 178 114 3617 136 30 3 chr1 209601190 209601899 -72591765 + L1MA4 LINE L1 4754 5475 -743 855 206 6 6 chr1 209601899 209602074 -72591590 + AluJo SINE Alu 121 295 -17 1661 160 44 0 chr1 209602078 209602353 -72591311 + AluJb SINE Alu 3 289 -23 21 0 0 0 chr1 209602353 209602374 -72591290 + AT_rich Low_complexity Low_complexity 1 21 0 4862 138 24 4 chr1 209602387 209603178 -72590486 + L1MA4 LINE L1 5473 6279 -21 4105 131 45 30 chr1 209603194 209603847 -72589817 + MER50 LTR ERV1 7 672 -62 2370 99 0 0 chr1 209603847 209604151 -72589513 + AluSg1 SINE Alu 1 304 -5 4105 131 45 30 chr1 209604151 209604186 -72589478 + MER50 LTR ERV1 672 705 -29 374 328 0 8 chr1 209604221 209604340 -72589324 + MER5B DNA MER1_type 59 176 -2 1964 134 3 3 chr1 209604774 209605058 -72588606 + AluSx SINE Alu 3 286 -26 919 326 47 40 chr1 209605452 209605952 -72587712 - ERVL LTR ERVL -1772 3882 3374 1766 150 27 14 chr1 209605952 209606246 -72587418 + AluJb SINE Alu 1 298 -14 919 326 47 40 chr1 209606246 209606373 -72587291 - ERVL LTR ERVL -2280 3374 3249 2311 82 4 0 chr1 209606666 209606970 -72586694 + AluSg SINE Alu 1 305 0 663 198 27 11 chr1 209608117 209608384 -72585280 + CT-rich Low_complexity Low_complexity 1 271 0 2281 100 3 7 chr1 209608424 209608734 -72584930 + AluSg SINE Alu 1 309 -1 1803 104 62 85 chr1 209608749 209609056 -72584608 + AluSx SINE Alu 5 304 -8 285 211 35 123 chr1 209610247 209610361 -72583303 + L2 LINE L2 3169 3272 0 366 161 18 0 chr1 209610832 209610911 -72582753 - AluS SINE Alu -245 63 1 610 121 0 0 chr1 209611149 209611232 -72582432 - AluSp SINE Alu -12 301 219 1737 68 9 5 chr1 209611343 209611565 -72582099 - AluSp SINE Alu -90 223 1 913 97 18 177 chr1 209611747 209611973 -72581691 + L1MC3 LINE L1 6781 6970 -815 2181 139 0 13 chr1 209612002 209612318 -72581346 + AluSx SINE Alu 1 312 0 893 289 55 19 chr1 209612557 209612941 -72580723 - L2 LINE L2 -170 3143 2743 313 310 36 30 chr1 209613324 209613489 -72580175 - MER5B DNA MER1_type -12 177 4 1743 180 92 32 chr1 209614065 209614465 -72579199 + MSTC LTR MaLR 5 428 0 544 294 75 36 chr1 209614466 209614718 -72578946 + MIR SINE MIR 1 262 0 242 267 133 9 chr1 209614733 209614838 -72578826 + MER104 DNA Tc2 58 175 -5 1614 168 0 34 chr1 209615309 209615454 -72578210 + AluJo SINE Alu 1 149 -156 2044 128 10 0 chr1 209615454 209615744 -72577920 + AluSx SINE Alu 1 293 -19 1614 168 0 34 chr1 209615744 209615913 -72577751 + AluJo SINE Alu 149 305 0 868 292 100 31 chr1 209616040 209616492 -72577172 - L2 LINE L2 -1 3312 2830 316 320 36 117 chr1 209616893 209617202 -72576462 - L2 LINE L2 -2 3270 2987 584 312 108 35 chr1 209617213 209617302 -72576362 - L2 LINE L2 -8 3305 3224 2082 175 70 3 chr1 209617302 209617673 -72575991 + MSTD LTR MaLR 1 396 0 584 312 108 35 chr1 209617673 209618072 -72575592 - L2 LINE L2 -89 3224 2782 262 294 42 34 chr1 209619294 209619413 -72574251 - MER5A DNA MER1_type -41 148 29 1767 161 47 0 chr1 209620194 209620473 -72573191 + AluJo SINE Alu 1 292 -20 823 248 86 18 chr1 209620906 209621128 -72572536 + MIR SINE MIR 16 252 -10 2122 142 32 67 chr1 209621937 209622225 -72571439 + L1MB3 LINE L1 5768 6038 -145 1949 168 0 0 chr1 209622225 209622535 -72571129 - AluJb SINE Alu 0 312 3 2122 142 32 67 chr1 209622535 209622677 -72570987 + L1MB3 LINE L1 6038 6183 0 287 85 0 51 chr1 209622893 209622952 -72570712 + L1MB3 LINE L1 6128 6183 0 463 244 6 98 chr1 209623428 209623592 -72570072 + MER112 DNA MER1_type 1 149 -111 966 127 0 0 chr1 209623638 209623772 -72569892 - AluSg/x SINE Alu -18 294 161 364 250 0 0 chr1 209623773 209623849 -72569815 + MER112 DNA MER1_type 183 258 -2 1640 186 6 31 chr1 209624663 209624981 -72568683 + AluJb SINE Alu 3 312 0 564 277 23 42 chr1 209625810 209626036 -72567628 - MLT1L LTR MaLR 0 615 288 928 188 87 34 chr1 209626212 209626420 -72567244 - MER20 DNA MER1_type 0 219 1 392 240 76 99 chr1 209626432 209626603 -72567061 + MIR SINE MIR 96 262 0 261 0 0 0 chr1 209628192 209628221 -72565443 + (T)n Simple_repeat Simple_repeat 1 29 0 864 163 0 22 chr1 209628331 209628466 -72565198 + FLAM_C SINE Alu 2 133 0 187 275 176 22 chr1 209629220 209629311 -72564353 + L2 LINE L2 3168 3272 0 2226 85 44 0 chr1 209629511 209629805 -72563859 - AluSc SINE Alu -2 307 1 1381 155 0 0 chr1 209629921 209630121 -72563543 - AluJo SINE Alu -112 200 1 518 296 128 22 chr1 209630226 209630452 -72563212 + MIR SINE MIR 1 250 -12 3191 151 47 58 chr1 209630804 209631169 -72562495 - L1MA9 LINE L1 -5 6307 5951 1837 103 0 20 chr1 209631169 209631422 -72562242 - AluSx SINE Alu -64 248 1 3191 151 47 58 chr1 209631422 209631712 -72561952 - L1MA9 LINE L1 -361 5951 5659 220 294 54 22 chr1 209631722 209631814 -72561850 + L3b LINE CR1 1296 1390 -193 1961 214 131 27 chr1 209631876 209632464 -72561200 - L1ME2 LINE L1 -9 6155 5507 1442 210 50 39 chr1 209632464 209632882 -72560782 - MLT2B1 LTR ERVL 0 414 1 395 208 48 40 chr1 209632882 209632906 -72560758 - L1ME2 LINE L1 -658 5508 5486 2225 171 119 26 chr1 209632906 209633017 -72560647 + MLT1D LTR MaLR 1 100 -405 1530 166 68 20 chr1 209633017 209633312 -72560352 - AluJo SINE Alu -3 309 1 2225 171 119 26 chr1 209633312 209633662 -72560002 + MLT1D LTR MaLR 100 505 0 395 208 48 40 chr1 209633662 209633762 -72559902 - L1ME2 LINE L1 -680 5486 5383 323 295 41 33 chr1 209634124 209634246 -72559418 - L2 LINE L2 -508 2806 2684 882 247 77 39 chr1 209634342 209634671 -72558993 - MLT1B LTR MaLR 0 390 109 2141 121 69 36 chr1 209634671 209635034 -72558630 - THE1C LTR MaLR 0 375 1 882 247 77 39 chr1 209635034 209635148 -72558516 - MLT1B LTR MaLR -281 109 1 1611 180 7 7 chr1 209635688 209635983 -72557681 + AluJo SINE Alu 13 307 -5 22 70 0 0 chr1 209636051 209636094 -72557570 + AT_rich Low_complexity Low_complexity 1 43 0 341 93 19 0 chr1 209636590 209636644 -72557020 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 290 317 15 18 chr1 209636668 209636882 -72556782 - L2 LINE L2 -99 3214 2939 305 262 45 110 chr1 209636882 209637164 -72556500 + L1MC/D LINE L1 5593 5854 -302 640 262 86 49 chr1 209637164 209637408 -72556256 - MLT1J2 LTR MaLR -131 319 67 1278 193 45 4 chr1 209637419 209637662 -72556002 - MLT1D LTR MaLR 0 505 253 355 206 29 0 chr1 209637757 209637825 -72555839 - MER63A DNA MER1_type -43 167 98 319 254 169 8 chr1 209638007 209638137 -72555527 + L2 LINE L2 3163 3313 0 812 180 0 43 chr1 209639760 209639899 -72553765 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr1 209640371 209640391 -72553273 + (A)n Simple_repeat Simple_repeat 1 20 0 1918 173 0 0 chr1 209641300 209641600 -72552064 + AluJo SINE Alu 1 300 -12 818 190 16 5 chr1 209642299 209642483 -72551181 + L1M4 LINE L1 4993 5178 -968 2066 123 0 13 chr1 209642732 209643033 -72550631 + AluSx SINE Alu 1 297 -15 229 258 101 11 chr1 209643253 209643342 -72550322 + MIR SINE MIR 154 250 -12 1589 247 169 33 chr1 209644081 209644118 -72549546 + MER20B DNA MER1_type 1 32 -751 539 204 28 83 chr1 209644118 209644299 -72549365 + MER5B DNA MER1_type 4 174 -4 1589 247 169 33 chr1 209644299 209644922 -72548742 + MER20B DNA MER1_type 32 751 -32 553 281 37 6 chr1 209645053 209645217 -72548447 + MIR SINE MIR 83 251 -11 210 171 0 0 chr1 209645227 209645268 -72548396 + (ATG)n Simple_repeat Simple_repeat 2 42 0 185 256 24 73 chr1 209645734 209645816 -72547848 + L3 LINE CR1 1252 1329 -248 221 337 22 0 chr1 209646137 209646226 -72547438 - L3b LINE CR1 -66 1517 1427 572 283 112 14 chr1 209646280 209646503 -72547161 - MIR SINE MIR -15 247 3 1327 183 32 45 chr1 209646597 209646909 -72546755 - MER33 DNA MER1_type 0 324 17 716 216 99 18 chr1 209647472 209647643 -72546021 - MER5A DNA MER1_type 0 189 5 329 271 10 0 chr1 209649221 209649317 -72544347 + MER94 DNA DNA 4 100 -34 543 279 159 22 chr1 209650624 209650850 -72542814 + MIR SINE MIR 3 259 -3 290 264 100 18 chr1 209650918 209651028 -72542636 - MIR3 SINE MIR -5 203 85 328 274 89 51 chr1 209651083 209651240 -72542424 + MIR SINE MIR 20 182 -80 1072 205 218 24 chr1 209652759 209653130 -72540534 + MLT1J1 LTR MaLR 4 446 0 24 0 0 0 chr1 209653834 209653858 -72539806 + AT_rich Low_complexity Low_complexity 1 24 0 644 230 158 36 chr1 209654142 209654501 -72539163 + MLT1J LTR MaLR 3 502 -9 180 267 0 0 chr1 209654527 209654587 -72539077 + CT-rich Low_complexity Low_complexity 3 62 0 457 239 126 31 chr1 209654614 209654773 -72538891 - MIR3 SINE MIR -32 176 3 2220 117 0 0 chr1 209655370 209655670 -72537994 + AluY SINE Alu 2 301 -10 210 304 249 20 chr1 209655953 209656109 -72537555 - L2 LINE L2 -194 3078 2959 2045 148 74 6 chr1 209656109 209656446 -72537218 - MER46B DNA MER2_type 0 236 2 210 304 249 20 chr1 209656446 209656549 -72537115 - L2 LINE L2 -313 2959 2752 318 26 0 0 chr1 209656579 209656618 -72537046 + (CA)n Simple_repeat Simple_repeat 2 40 0 1791 174 7 0 chr1 209656620 209656908 -72536756 - AluSx SINE Alu -21 291 2 362 309 8 32 chr1 209657753 209657879 -72535785 - MIR3 SINE MIR -16 192 70 180 83 62 21 chr1 209658126 209658174 -72535490 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 247 103 26 0 chr1 209658366 209658405 -72535259 + MSTC LTR MaLR 1 40 -388 354 61 0 0 chr1 209658529 209658578 -72535086 + (TATAA)n Simple_repeat Simple_repeat 1 49 0 1302 197 0 4 chr1 209659084 209659312 -72534352 - MSTC LTR MaLR -5 423 197 847 155 0 40 chr1 209659312 209659460 -72534204 - FLAM_C SINE Alu 0 143 2 1330 109 45 0 chr1 209659460 209659661 -72534003 - MSTC LTR MaLR -218 210 1 203 331 134 0 chr1 209659775 209659902 -72533762 + MIR SINE MIR 113 256 -6 221 171 24 0 chr1 209660236 209660277 -72533387 + (CA)n Simple_repeat Simple_repeat 1 42 0 577 296 34 26 chr1 209660390 209660623 -72533041 + L2 LINE L2 3079 3313 0 477 328 11 6 chr1 209662365 209662539 -72531125 - MIR3 SINE MIR -7 201 27 252 312 148 11 chr1 209662954 209663143 -72530521 - L3b LINE CR1 -195 1388 1174 1484 201 6 16 chr1 209664746 209665059 -72528605 + AluJb SINE Alu 1 310 -2 229 195 0 0 chr1 209665197 209665238 -72528426 + L2 LINE L2 3263 3303 -10 1115 165 30 5 chr1 209665393 209665593 -72528071 - MER3 DNA MER1_type -4 205 1 562 180 6 120 chr1 209665778 209665814 -72527850 - MER58 DNA MER1_type -3 2417 2379 2279 89 3 32 chr1 209665814 209666130 -72527534 + AluSx SINE Alu 1 307 -5 562 180 6 120 chr1 209666130 209666177 -72527487 - MER58 DNA MER1_type -41 2379 2328 2341 86 36 3 chr1 209666177 209666479 -72527185 + AluSp SINE Alu 1 312 -1 562 180 6 120 chr1 209666479 209666561 -72527103 - MER58 DNA MER1_type -92 2328 2270 * 794 181 60 0 chr1 209666557 209666723 -72526941 - MER58 DNA MER1_type -2235 185 10 2171 120 3 0 chr1 209666871 209667171 -72526493 + AluSx SINE Alu 1 301 -11 1937 133 16 41 chr1 209667554 209667871 -72525793 + AluJo SINE Alu 1 309 -3 683 117 0 0 chr1 209668279 209668382 -72525282 - L1PA13 LINE L1 -1 6162 6060 506 284 57 6 chr1 209668757 209668933 -72524731 + MIR3 SINE MIR 23 207 -1 958 135 0 0 chr1 209669076 209669209 -72524455 + AluSq/x SINE Alu 1 133 -179 237 65 0 0 chr1 209669209 209669240 -72524424 + (A)n Simple_repeat Simple_repeat 1 31 0 1190 62 0 14 chr1 209669661 209669806 -72523858 + AluSq/x SINE Alu 1 143 -170 12773 112 10 34 chr1 209669806 209671970 -72521694 + L1P3 LINE L1 7 2152 -4309 3900 31 2 0 chr1 209671970 209672422 -72521242 + L1PA3 LINE L1 5702 6154 -1 12773 112 10 34 chr1 209672422 209672863 -72520801 + L1P3 LINE L1 2152 2602 -3859 1818 211 38 82 chr1 209722869 209723555 -72470109 - L1M4c LINE L1 -4804 1580 925 901 196 0 0 chr1 209723555 209723713 -72469951 + FRAM SINE Alu 1 155 -21 1474 300 44 74 chr1 209723767 209724790 -72468874 - L1M3a LINE L1 -4962 993 2 1100 256 151 55 chr1 209724797 209725452 -72468212 - L2 LINE L2 -162 3151 2431 479 306 10 47 chr1 209725730 209725923 -72467741 + MIR SINE MIR 27 212 -50 1272 318 51 16 chr1 209725970 209726460 -72467204 + LTR33 LTR ERVL 15 521 0 1177 309 6 24 chr1 209726785 209727174 -72466490 - MER1B DNA MER1_type 0 339 1 358 159 32 0 chr1 209728829 209728892 -72464772 - MER58 DNA MER1_type -1 2419 2355 275 200 187 0 chr1 209728898 209728973 -72464691 - MER58 DNA MER1_type -116 99 11 448 240 40 27 chr1 209730063 209730213 -72463451 + L2 LINE L2 3162 3313 0 1402 251 58 50 chr1 209731003 209731599 -72462065 - L2 LINE L2 0 3313 2702 1092 199 12 12 chr1 209731608 209731849 -72461815 - L1MB3 LINE L1 -3 6180 5940 1791 214 69 44 chr1 209731961 209732465 -72461199 + L1MA10 LINE L1 5816 6332 -2 244 256 52 17 chr1 209732476 209732648 -72461016 + (TA)n Simple_repeat Simple_repeat 2 179 0 620 128 0 0 chr1 209732660 209732754 -72460910 - L1PA13 LINE L1 0 6163 6070 5599 141 46 172 chr1 209732754 209734350 -72459314 - L1M2a LINE L1 -5651 1517 123 577 166 69 55 chr1 209734624 209734769 -72458895 - L1M2a LINE L1 -7019 149 3 201 224 61 0 chr1 209734777 209734826 -72458838 + MIR SINE MIR 118 169 -93 1393 235 53 0 chr1 209735039 209735358 -72458306 + MER58B DNA MER1_type 5 340 -1 22 35 0 0 chr1 209735587 209735616 -72458048 + AT_rich Low_complexity Low_complexity 1 29 0 1548 154 6 134 chr1 209735629 209735973 -72457691 - AluSx SINE Alu -2 300 1 2303 111 3 0 chr1 209735986 209736293 -72457371 - AluSp SINE Alu -5 308 1 26 64 0 0 chr1 209736351 209736398 -72457266 + AT_rich Low_complexity Low_complexity 1 47 0 583 314 102 58 chr1 209736666 209737099 -72456565 + L2 LINE L2 2821 3272 0 1948 5 0 0 chr1 209737861 209738067 -72455597 + AluYa5 SINE Alu 99 304 -7 581 222 217 5 chr1 209738572 209738770 -72454894 - MIR SINE MIR 0 262 23 579 236 107 52 chr1 209738992 209739225 -72454439 + MIR SINE MIR 17 262 0 535 277 60 16 chr1 209739346 209739530 -72454134 + MER112 DNA MER1_type 65 256 -4 321 284 11 0 chr1 209739557 209739645 -72454019 + MIR SINE MIR 62 150 -112 1491 176 103 0 chr1 209740235 209740507 -72453157 - AluJb SINE Alu -12 300 1 288 305 19 71 chr1 209740531 209740550 -72453114 - MIR SINE MIR -64 144 126 2165 102 3 0 chr1 209740550 209740834 -72452830 - AluSx SINE Alu -27 285 1 288 305 19 71 chr1 209740834 209740968 -72452696 - MIR SINE MIR -82 126 17 204 40 0 0 chr1 209741001 209741026 -72452638 + (ATG)n Simple_repeat Simple_repeat 3 27 0 328 313 31 8 chr1 209741300 209741428 -72452236 + MARNA DNA Mariner 287 417 -169 656 170 0 9 chr1 209741549 209741661 -72452003 + AluJo SINE Alu 28 138 -174 237 299 41 0 chr1 209741677 209741774 -72451890 + MARNA DNA Mariner 479 579 -7 2278 90 0 17 chr1 209741949 209742248 -72451416 - AluY SINE Alu -16 295 2 957 279 35 43 chr1 209742768 209743163 -72450501 - LTR16A LTR ERVL -40 410 19 345 275 12 0 chr1 209743547 209743627 -72450037 - ERVL LTR ERVL -700 5064 4984 425 189 0 0 chr1 209743687 209743761 -72449903 + MER3 DNA MER1_type 41 114 -95 802 121 8 0 chr1 209743764 209743888 -72449776 + MER3 DNA MER1_type 2461 2585 0 3335 321 82 47 chr1 209743889 209745288 -72448376 - ERVL LTR ERVL -870 4894 3386 2685 153 26 2 chr1 209745288 209745705 -72447959 - MSTA LTR MaLR 0 428 2 3335 321 82 47 chr1 209745705 209746536 -72447128 - ERVL LTR ERVL -2378 3386 2586 269 26 26 0 chr1 209746537 209746575 -72447089 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 291 93 0 0 chr1 209746576 209746619 -72447045 + (TG)n Simple_repeat Simple_repeat 2 44 0 188 158 18 0 chr1 209746633 209746690 -72446974 + (TA)n Simple_repeat Simple_repeat 2 59 0 780 219 6 6 chr1 209746812 209746990 -72446674 - L1MC4 LINE L1 -145 7897 7720 728 215 93 5 chr1 209747003 209747208 -72446456 - L1MC4 LINE L1 -442 7600 7378 645 184 29 0 chr1 209747218 209747321 -72446343 - FLAM_C SINE Alu -19 124 19 612 216 39 13 chr1 209747322 209747475 -72446189 - L1MC4a LINE L1 -505 7303 7147 * 1131 255 75 40 chr1 209747460 209747836 -72445828 - L1MC4 LINE L1 -958 7084 6696 * 4407 194 22 51 chr1 209747833 209748117 -72445547 - L1P LINE L1 -3167 2979 2688 2318 112 0 0 chr1 209748117 209748429 -72445235 - AluSq SINE Alu -1 312 1 4407 194 22 51 chr1 209748429 209749240 -72444424 - L1P LINE L1 -3458 2688 1916 7289 245 53 19 chr1 209749240 209750649 -72443015 - L1M4 LINE L1 -883 5761 4401 2191 122 3 0 chr1 209750649 209750953 -72442711 - AluSx SINE Alu -7 305 1 7289 245 53 19 chr1 209750953 209751633 -72442031 - L1M4 LINE L1 -2243 4401 3587 1742 179 17 0 chr1 209751633 209751929 -72441735 + AluJo SINE Alu 1 301 -11 7289 245 53 19 chr1 209751929 209752098 -72441566 - L1M4 LINE L1 -3057 3587 3425 353 261 108 0 chr1 209752126 209752237 -72441427 - L1M4 LINE L1 -3115 3529 3407 6112 67 15 100 chr1 209752238 209753240 -72440424 + L1MA2 LINE L1 5388 6304 0 3209 254 50 65 chr1 209753256 209753305 -72440359 - L1M4 LINE L1 -5199 1343 1295 2431 97 0 3 chr1 209753305 209753615 -72440049 - AluSx SINE Alu -3 309 1 3209 254 50 65 chr1 209753615 209754926 -72438738 - L1M4 LINE L1 -5247 1295 3 601 298 63 41 chr1 209754938 209755398 -72438266 - L1MDa LINE L1 -1610 4930 4461 513 274 49 4 chr1 209755399 209755625 -72438039 - L1MDa LINE L1 -2648 3892 3657 279 256 40 65 chr1 209755870 209756086 -72437578 - L1MDa LINE L1 -3938 2602 2489 * 4903 158 7 52 chr1 209756077 209756304 -72437360 - L1MA4 LINE L1 -1 6299 6063 2365 105 3 0 chr1 209756304 209756609 -72437055 - AluSp SINE Alu -7 306 1 4903 158 7 52 chr1 209756609 209757022 -72436642 - L1MA4 LINE L1 -237 6063 5633 1785 169 24 3 chr1 209757022 209757317 -72436347 - AluJb SINE Alu -11 301 1 4903 158 7 52 chr1 209757317 209757578 -72436086 - L1MA4 LINE L1 -667 5633 5362 194 61 0 30 chr1 209757578 209757611 -72436053 + (TGG)n Simple_repeat Simple_repeat 1 32 0 2448 81 3 3 chr1 209757611 209757918 -72435746 - AluSq SINE Alu -6 307 1 4903 158 7 52 chr1 209757918 209757991 -72435673 - L1MA4 LINE L1 -859 5441 5366 5639 24 0 10 chr1 209757991 209758610 -72435054 - SVA Other Other 0 1386 774 781 308 133 15 chr1 209758743 209759133 -72434531 + L2 LINE L2 1402 1837 -1477 3778 199 42 60 chr1 209759150 209759942 -72433722 - L1ME1 LINE L1 -6 6229 5446 2452 76 76 23 chr1 209759942 209760284 -72433380 - THE1B LTR MaLR -2 362 3 3778 199 42 60 chr1 209760284 209760481 -72433183 - L1ME1 LINE L1 -789 5446 5247 1669 152 63 45 chr1 209760481 209760816 -72432848 + MER46B DNA MER2_type 19 234 -2 2946 230 47 14 chr1 209760844 209761583 -72432081 - L1ME1 LINE L1 -5596 800 37 2138 122 3 0 chr1 209761604 209761900 -72431764 + AluSx SINE Alu 1 297 -15 188 397 0 0 chr1 209761927 209762000 -72431664 - L2 LINE L2 -611 2703 2631 680 250 11 60 chr1 209762000 209762184 -72431480 + MER96 DNA MER1_type? 1 175 0 414 322 92 0 chr1 209762184 209762358 -72431306 - L2 LINE L2 -676 2638 2449 323 310 43 17 chr1 209762358 209762535 -72431129 - MER63 DNA MER1_type -1 1061 27 275 325 25 0 chr1 209762682 209762762 -72430902 + L2 LINE L2 3169 3250 -22 16195 175 33 13 chr1 209764317 209769493 -72424171 - L1MA4 LINE L1 -4 7715 2428 353 200 110 10 chr1 209769467 209769567 -72424097 - L1MA4 LINE L1 -5163 1402 1293 * 180 357 0 14 chr1 209769909 209769979 -72423685 + L2 LINE L2 3118 3186 -86 279 286 43 43 chr1 209770280 209770409 -72423255 - MIR SINE MIR -78 130 2 2118 121 0 0 chr1 209770475 209770847 -72422817 + AluSx SINE Alu 1 372 0 183 336 103 17 chr1 209771995 209772111 -72421553 - L2 LINE L2 -2 3270 3145 215 269 39 13 chr1 209772255 209772333 -72421331 + MIR SINE MIR 96 175 -87 23 54 0 0 chr1 209772874 209772911 -72420753 + AT_rich Low_complexity Low_complexity 1 37 0 2147 76 3 59 chr1 209773194 209773497 -72420167 + AluSg SINE Alu 1 286 -24 533 300 85 28 chr1 209774567 209774814 -72418850 - MIR SINE MIR 0 262 2 249 33 0 0 chr1 209775202 209775232 -72418432 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 311 234 123 29 chr1 209775465 209775587 -72418077 - MIR3 SINE MIR -12 196 67 23 0 0 0 chr1 209776290 209776313 -72417351 + GC_rich Low_complexity Low_complexity 1 23 0 1724 41 45 25 chr1 209777101 209777345 -72416319 - SVA Other Other -1136 250 2 1014 126 0 0 chr1 209777346 209777481 -72416183 - AluSq/x SINE Alu -177 135 1 254 154 0 0 chr1 209777484 209777523 -72416141 + LTR8A LTR ERV1 187 225 -502 1454 147 0 77 chr1 209777523 209777782 -72415882 - AluJb SINE Alu -73 239 1 388 162 15 0 chr1 209777782 209777850 -72415814 + MLT1A1 LTR MaLR 297 365 0 503 185 25 0 chr1 209779665 209779770 -72413894 - AluJb SINE Alu 0 305 199 5016 220 28 31 chr1 209779898 209781291 -72412373 + L1 LINE L1 2285 3673 -3892 916 163 6 36 chr1 209781295 209781461 -72412203 + LTR1B LTR ERV1 1 161 -665 7379 180 53 28 chr1 209781461 209782888 -72410776 + HUERS-P2 LTR ERV1 98 1560 -1528 8307 129 35 27 chr1 209782893 209783446 -72410218 + HUERS-P2 LTR ERV1 1787 2334 -754 2004 139 14 0 chr1 209783446 209783741 -72409923 + AluSx SINE Alu 1 299 -13 8307 129 35 27 chr1 209783741 209784479 -72409185 + HUERS-P2 LTR ERV1 2334 3088 0 4185 190 88 7 chr1 209784479 209785243 -72408421 + LTR1B LTR ERV1 1 826 0 1257 214 18 0 chr1 209785243 209785519 -72408145 + L1 LINE L1 3678 3958 -3607 5222 175 34 24 chr1 209785519 209786166 -72407498 + L1 LINE L1 5681 6345 -1220 2082 112 7 26 chr1 209786166 209786470 -72407194 + AluSp SINE Alu 1 298 -15 5222 175 34 24 chr1 209786470 209786928 -72406736 + L1 LINE L1 6345 6797 -768 264 286 98 27 chr1 209787950 209788062 -72405602 - L2 LINE L2 -13 3259 3140 199 231 96 0 chr1 209788112 209788164 -72405500 + MIR SINE MIR 90 146 -62 219 176 54 0 chr1 209790735 209790809 -72402855 + (TA)n Simple_repeat Simple_repeat 2 79 0 263 261 109 0 chr1 209790950 209791042 -72402622 - L2 LINE L2 -9 3263 3162 7132 207 37 91 chr1 209793137 209794444 -72399220 + L1M1 LINE L1 2871 4247 -3318 956 205 0 0 chr1 209794444 209794605 -72399059 + FRAM SINE Alu 1 159 -17 7132 207 37 91 chr1 209794605 209794622 -72399042 + L1M1 LINE L1 4247 4263 -3302 2109 129 7 0 chr1 209794622 209794917 -72398747 - AluSx SINE Alu -15 297 1 7132 207 37 91 chr1 209794917 209795862 -72397802 + L1M1 LINE L1 4263 5109 -2456 1508 203 34 0 chr1 209795862 209796153 -72397511 + AluJo SINE Alu 1 301 -11 7132 207 37 91 chr1 209796153 209796752 -72396912 + L1M1 LINE L1 5109 5739 -1826 2018 122 21 0 chr1 209797239 209797525 -72396139 + AluSg SINE Alu 1 292 -18 1620 160 39 7 chr1 209798000 209798282 -72395382 - AluJb SINE Alu -21 291 1 25 31 0 0 chr1 209798284 209798316 -72395348 + AT_rich Low_complexity Low_complexity 1 32 0 467 100 14 0 chr1 209798316 209798386 -72395278 - MER41B LTR ERV1 -86 549 479 1637 170 48 30 chr1 209798419 209798749 -72394915 - MER44D DNA MER2_type -3 606 1 2091 123 7 10 chr1 209798767 209799076 -72394588 - AluSx SINE Alu -4 308 1 2521 137 48 135 chr1 209799077 209799185 -72394479 - L1MA8 LINE L1 -433 5858 5742 547 123 0 0 chr1 209799185 209799258 -72394406 - AluJ/FLAM SINE Alu -238 74 2 2521 137 48 135 chr1 209799258 209799707 -72393957 - L1MA8 LINE L1 -549 5742 5284 * 3379 170 11 5 chr1 209799705 209800340 -72393324 + L1M1 LINE L1 5834 6472 -1093 2254 104 7 3 chr1 209800345 209800644 -72393020 + AluSx SINE Alu 1 300 -12 1005 194 78 0 chr1 209800662 209800842 -72392822 + MSTC LTR MaLR 233 426 -2 3219 151 26 36 chr1 209801278 209801405 -72392259 + MER7C DNA MER2_type 32 159 -2869 4138 133 27 2 chr1 209801405 209801993 -72391671 + LTR26 LTR ERV1 1 603 0 3219 151 26 36 chr1 209801993 209802442 -72391222 + MER7C DNA MER2_type 159 602 0 357 180 58 72 chr1 209802599 209802619 -72391045 - L1ME4a LINE L1 0 6121 6102 919 284 80 48 chr1 209802619 209803055 -72390609 + MLT1J2 LTR MaLR 1 450 0 357 180 58 72 chr1 209803055 209803173 -72390491 - L1ME4a LINE L1 -19 6102 5985 245 309 25 37 chr1 209803191 209803272 -72390392 + MIR3 SINE MIR 3 82 -126 1034 278 115 23 chr1 209804871 209805314 -72388350 + LTR33 LTR ERVL 8 491 -30 1341 151 0 41 chr1 209805608 209805826 -72387838 - MER3 DNA MER1_type 0 209 1 2066 128 7 0 chr1 209806127 209806432 -72387232 - AluSx SINE Alu 0 309 3 365 336 67 45 chr1 209806592 209806967 -72386697 + ERVL LTR ERVL 850 1232 -4532 998 200 29 24 chr1 209807000 209807205 -72386459 + MER3 DNA MER1_type 2 207 -2 233 301 70 14 chr1 209807326 209807469 -72386195 - L1M4 LINE L1 -3143 3003 2853 25 31 0 0 chr1 209807613 209807645 -72386019 + AT_rich Low_complexity Low_complexity 1 32 0 377 316 86 49 chr1 209807781 209808107 -72385557 - L1M4 LINE L1 -3689 2457 2120 2057 62 74 0 chr1 209808568 209808826 -72384838 + AluY SINE Alu 24 300 -11 224 269 62 115 chr1 209808860 209808990 -72384674 + MIR SINE MIR 1 123 -139 22 0 0 0 chr1 209809079 209809101 -72384563 + AT_rich Low_complexity Low_complexity 1 22 0 2386 100 0 0 chr1 209809155 209809465 -72384199 - AluSx SINE Alu -2 310 1 1701 160 24 24 chr1 209810270 209810564 -72383100 + AluJb SINE Alu 1 294 -18 218 344 91 16 chr1 209810640 209810826 -72382838 + MIR SINE MIR 58 257 -5 23 33 0 0 chr1 209810953 209810983 -72382681 + AT_rich Low_complexity Low_complexity 1 30 0 281 222 94 43 chr1 209812805 209812922 -72380742 - L2 LINE L2 -975 2339 2217 1157 272 90 60 chr1 209812926 209812951 -72380713 + MER20B DNA MER1_type 2 25 -758 1619 233 36 18 chr1 209812951 209813401 -72380263 - LTR40b LTR ERVL -4 458 1 1157 272 90 60 chr1 209813401 209813624 -72380040 + MER20B DNA MER1_type 25 240 -543 1642 178 0 11 chr1 209813624 209813911 -72379753 - AluSx SINE Alu -8 304 21 1157 272 90 60 chr1 209813911 209814161 -72379503 + MER20B DNA MER1_type 240 516 -267 767 266 49 0 chr1 209814286 209814512 -72379152 - L2 LINE L2 -1338 1976 1740 260 287 125 37 chr1 209815502 209815638 -72378026 + MIR SINE MIR 3 150 -112 5808 146 28 14 chr1 209815977 209816829 -72376835 - L1PA16 LINE L1 -21 6145 5247 2218 107 10 10 chr1 209816829 209817127 -72376537 - AluSx SINE Alu -14 298 1 5808 146 28 14 chr1 209817127 209817754 -72375910 - L1PA16 LINE L1 -919 5247 4630 2284 98 0 30 chr1 209817772 209818077 -72375587 + AluSq SINE Alu 1 296 -17 775 172 0 16 chr1 209818077 209818205 -72375459 - AluJo/FLAM SINE Alu -186 126 1 4086 179 25 5 chr1 209818209 209819040 -72374624 - L1 LINE L1 -1510 4636 3789 494 300 17 48 chr1 209819660 209819890 -72373774 + MIR SINE MIR 32 254 -8 201 196 20 0 chr1 209819909 209819960 -72373704 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 2162 108 40 0 chr1 209820427 209820724 -72372940 + AluSx SINE Alu 1 309 -3 1655 186 36 0 chr1 209821494 209821774 -72371890 - AluJb SINE Alu -22 290 1 2170 114 0 3 chr1 209821802 209822099 -72371565 - AluSx SINE Alu -16 296 1 1601 135 135 8 chr1 209822930 209823189 -72370475 + AluSg1 SINE Alu 1 292 -17 435 270 83 83 chr1 209824218 209824689 -72368975 + L1MEd LINE L1 2 472 -5647 2208 153 26 85 chr1 209824882 209825378 -72368286 - MLT1C LTR MaLR 0 467 1 495 318 53 12 chr1 209825687 209825857 -72367807 - MIR SINE MIR -66 196 20 450 267 9 0 chr1 209826223 209826339 -72367325 + MIR SINE MIR 53 169 -93 225 0 0 0 chr1 209826382 209826407 -72367257 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1272 198 4 12 chr1 209826414 209826657 -72367007 - AluJo SINE Alu -48 264 24 225 0 0 0 chr1 209826668 209826693 -72366971 + (T)n Simple_repeat Simple_repeat 1 25 0 859 303 54 82 chr1 209826716 209827250 -72366414 + MLT1L LTR MaLR 93 611 -4 21 0 0 0 chr1 209827328 209827349 -72366315 + AT_rich Low_complexity Low_complexity 1 21 0 1779 148 332 33 chr1 209827379 209827858 -72365806 + LTR29 LTR ERV1 1 622 0 1929 112 6 61 chr1 209829717 209830029 -72363635 - AluSx SINE Alu -17 295 1 250 306 14 14 chr1 209830188 209830260 -72363404 + L2 LINE L2 3158 3229 -43 1373 183 70 43 chr1 209830401 209830702 -72362962 + AluJo SINE Alu 1 309 -3 327 137 20 0 chr1 209830850 209830901 -72362763 + Alu SINE Alu 2 53 -246 1364 218 80 55 chr1 209831439 209831574 -72362090 + MLT1C LTR MaLR 40 170 -297 1994 149 3 3 chr1 209831574 209831870 -72361794 + AluSx SINE Alu 1 296 -16 1364 218 80 55 chr1 209831870 209832082 -72361582 + MLT1C LTR MaLR 170 406 -61 2065 136 10 0 chr1 209832082 209832390 -72361274 - AluSx SINE Alu -1 311 1 1364 218 80 55 chr1 209832390 209832447 -72361217 + MLT1C LTR MaLR 406 460 -7 324 257 0 0 chr1 209832459 209832533 -72361131 - L1MC5 LINE L1 -1124 6837 6764 333 200 9 57 chr1 209832533 209832638 -72361026 - L1MC4a LINE L1 -1152 6656 6557 611 274 107 57 chr1 209832838 209833316 -72360348 - HAL1b LINE L1 -539 809 308 908 73 0 0 chr1 209833443 209833552 -72360112 + AluSp/q SINE Alu 183 291 -22 699 174 56 14 chr1 209833587 209833731 -72359933 - AluJb SINE Alu 0 312 163 373 299 72 45 chr1 209833731 209833952 -72359712 - HAL1b LINE L1 -1118 230 4 26 0 0 0 chr1 209834080 209834106 -72359558 + AT_rich Low_complexity Low_complexity 1 26 0 774 123 29 65 chr1 209834106 209834244 -72359420 - FLAM_C SINE Alu 0 133 1 926 147 11 68 chr1 209834246 209834423 -72359241 - FRAM SINE Alu -15 161 1 1606 163 0 0 chr1 209835264 209835510 -72358154 - AluJb SINE Alu -66 246 1 933 275 35 50 chr1 209835592 209836074 -72357590 + L2 LINE L2 2686 3149 -164 2148 144 0 0 chr1 209836074 209836379 -72357285 + AluSx SINE Alu 1 305 -7 933 275 35 50 chr1 209836379 209836541 -72357123 + L2 LINE L2 3149 3312 -1 320 272 43 22 chr1 209837909 209838001 -72355663 - MIR SINE MIR -96 166 73 2222 128 0 0 chr1 209838059 209838363 -72355301 + AluSx SINE Alu 1 304 -8 330 307 50 0 chr1 209838429 209838530 -72355134 - MER94 DNA DNA 0 134 29 389 299 121 24 chr1 209839004 209839211 -72354453 + MIR SINE MIR 6 232 -30 189 74 0 0 chr1 209839229 209839256 -72354408 + (ATG)n Simple_repeat Simple_repeat 3 29 0 243 316 35 9 chr1 209839419 209839533 -72354131 - L2 LINE L2 -17 3296 3180 309 260 27 0 chr1 209840332 209840405 -72353259 + MER20 DNA MER1_type 1 75 -144 886 177 0 0 chr1 209840421 209840562 -72353102 + AluJo SINE Alu 1 141 -171 982 173 5 32 chr1 209840653 209840838 -72352826 + AluJb SINE Alu 63 242 -70 736 161 46 0 chr1 209840845 209840975 -72352689 + MER20 DNA MER1_type 82 217 -2 302 79 0 0 chr1 209841108 209841146 -72352518 + LTR23 LTR ERV1 322 359 -78 1943 90 0 56 chr1 209841310 209841598 -72352066 + AluSx SINE Alu 1 272 -40 343 160 0 0 chr1 209841698 209841748 -72351916 - Alu SINE Alu -250 50 1 242 396 52 0 chr1 209842133 209842325 -72351339 - L2 LINE L2 -9 3304 3103 308 268 22 98 chr1 209842527 209842636 -72351028 + L2 LINE L2 2644 2735 -579 2390 79 0 0 chr1 209842636 209842926 -72350738 + AluY SINE Alu 1 290 -21 308 268 22 98 chr1 209842926 209842999 -72350665 + L2 LINE L2 2735 2812 -502 226 226 22 109 chr1 209844330 209844467 -72349197 - Charlie8 DNA MER1_type -2253 164 40 602 236 26 40 chr1 209845155 209845333 -72348331 - MIR SINE MIR -56 206 34 275 297 30 6 chr1 209846647 209846812 -72346852 + (TA)n Simple_repeat Simple_repeat 1 169 0 2045 166 19 0 chr1 209846812 209847137 -72346527 + MER7A DNA MER2_type 1 329 -17 2320 82 0 3 chr1 209847169 209847461 -72346203 - AluY SINE Alu -16 295 5 1591 212 71 34 chr1 209847669 209847954 -72345710 - MSTD LTR MaLR 0 396 92 2070 133 3 20 chr1 209847954 209848255 -72345409 - AluSp SINE Alu -17 296 1 1591 212 71 34 chr1 209848255 209848351 -72345313 - MSTD LTR MaLR -304 92 1 509 265 56 6 chr1 209848641 209848803 -72344861 - MIR3 SINE MIR -33 175 6 2418 145 8 5 chr1 209850038 209850430 -72343234 - L1PB4 LINE L1 -1 6155 5763 181 250 0 0 chr1 209851327 209851379 -72342285 + MIR SINE MIR 37 88 -120 377 294 18 30 chr1 209851521 209851706 -72341958 - MIR SINE MIR -57 151 23 261 238 155 107 chr1 209852923 209853091 -72340573 - MER102b DNA MER1_type -5 336 161 339 85 0 0 chr1 209853103 209853150 -72340514 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2316 214 81 29 chr1 209853414 209854007 -72339657 - MLT1E2 LTR MaLR 0 626 3 38 0 0 0 chr1 209854401 209854439 -72339225 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr1 209854465 209854500 -72339164 + AT_rich Low_complexity Low_complexity 1 35 0 231 213 0 0 chr1 209854503 209854550 -72339114 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 58 0 0 0 chr1 209854622 209854680 -72338984 + AT_rich Low_complexity Low_complexity 1 58 0 1223 191 164 0 chr1 209854683 209854939 -72338725 + AluSx SINE Alu 5 302 -10 2306 78 7 3 chr1 209855344 209855739 -72337925 + AluSq SINE Alu 1 396 0 229 294 101 8 chr1 209855911 209856030 -72337634 + L3 LINE CR1 1265 1394 -183 365 302 94 23 chr1 209856210 209856456 -72337208 + L1ME LINE L1 5567 5826 -336 772 263 106 0 chr1 209856943 209857179 -72336485 - MIR SINE MIR 0 262 2 2323 103 7 3 chr1 209857277 209857587 -72336077 + AluSx SINE Alu 1 311 -1 422 259 123 38 chr1 209857601 209857813 -72335851 + MLT1J LTR MaLR 1 230 -281 369 279 29 29 chr1 209857891 209858027 -72335637 + MLT1J LTR MaLR 224 359 -152 1501 155 8 8 chr1 209859382 209859633 -72334031 - AluJo SINE Alu -61 251 1 370 228 13 0 chr1 209859848 209859927 -72333737 - MIR3 SINE MIR -53 155 76 304 289 250 19 chr1 209859976 209860132 -72333532 - MIR SINE MIR -56 206 15 800 166 14 35 chr1 209860568 209860713 -72332951 + FAM SINE Alu 21 162 -23 207 0 0 0 chr1 209860759 209860782 -72332882 + (TA)n Simple_repeat Simple_repeat 1 23 0 458 280 42 18 chr1 209860933 209861101 -72332563 + MIR SINE MIR 20 191 -71 1877 165 0 0 chr1 209861159 209861450 -72332214 + AluJb SINE Alu 1 291 -21 21 36 0 0 chr1 209861542 209861570 -72332094 + AT_rich Low_complexity Low_complexity 1 28 0 1258 150 105 149 chr1 209861677 209862099 -72331565 - MLT2D LTR ERVL 0 464 60 2024 137 17 0 chr1 209862099 209862399 -72331265 + AluSq SINE Alu 9 313 0 290 65 0 22 chr1 209862399 209862445 -72331219 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 1500 119 183 0 chr1 209862862 209863113 -72330551 - AluSg SINE Alu -2 298 2 254 233 68 0 chr1 209863704 209863777 -72329887 - MIR SINE MIR -96 166 89 979 283 97 11 chr1 209864037 209864418 -72329246 - L1MC4a LINE L1 -422 5740 5511 1830 166 3 31 chr1 209864657 209865000 -72328664 + AluJo SINE Alu 1 312 0 2231 120 3 0 chr1 209865185 209865493 -72328171 + AluSx SINE Alu 1 309 -3 317 265 133 0 chr1 209865729 209865893 -72327771 - MIR SINE MIR -56 206 19 885 270 80 126 chr1 209865919 209866353 -72327311 - L2 LINE L2 -116 3197 2745 2136 131 0 3 chr1 209866353 209866651 -72327013 + AluSx SINE Alu 1 297 -15 885 270 80 126 chr1 209866651 209867004 -72326660 - L2 LINE L2 -568 2745 2486 1585 208 6 13 chr1 209867004 209867317 -72326347 + AluJo SINE Alu 1 311 -1 885 270 80 126 chr1 209867317 209867771 -72325893 - L2 LINE L2 -827 2486 2013 500 132 0 0 chr1 209868038 209868106 -72325558 + AluS SINE Alu 2 69 -241 1431 204 93 14 chr1 209869199 209869361 -72324303 - AluJo SINE Alu 0 302 154 288 0 0 0 chr1 209869361 209869393 -72324271 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1431 204 93 14 chr1 209869393 209869509 -72324155 - AluJo SINE Alu -148 154 2 518 210 20 150 chr1 209869687 209869810 -72323854 + MIR SINE MIR 27 164 -98 1880 154 14 0 chr1 209869810 209870090 -72323574 + AluSx SINE Alu 1 284 -28 438 20 0 0 chr1 209870090 209870141 -72323523 + (CA)n Simple_repeat Simple_repeat 2 52 0 518 210 20 150 chr1 209870141 209870216 -72323448 + MIR SINE MIR 162 200 -62 950 175 0 8 chr1 209870285 209870497 -72323167 - AluJb SINE Alu -32 280 1 2103 135 6 3 chr1 209871628 209871939 -72321725 - AluJb SINE Alu 0 312 1 469 324 135 50 chr1 209871949 209872588 -72321076 + L3 LINE CR1 199 891 -686 1524 155 121 0 chr1 209872961 209873225 -72320439 - AluJo SINE Alu -14 298 3 959 278 73 10 chr1 209873226 209873539 -72320125 + L3 LINE CR1 1148 1480 -97 2259 86 28 0 chr1 209873820 209874110 -72319554 + AluSq SINE Alu 1 298 -15 209 248 10 69 chr1 209874605 209874706 -72318958 + CT-rich Low_complexity Low_complexity 6 100 0 2266 97 3 44 chr1 209874961 209875280 -72318384 - AluSx SINE Alu -6 306 1 1637 173 54 0 chr1 209875281 209875559 -72318105 - AluJb SINE Alu -19 293 1 626 233 25 0 chr1 209875672 209875792 -72317872 + MLT1F1 LTR MaLR 1 123 -444 345 282 78 60 chr1 209875892 209876519 -72317145 - L1MEd LINE L1 -4831 1565 891 334 277 62 34 chr1 209877004 209877181 -72316483 - L1MEd LINE L1 -5893 312 131 186 43 0 0 chr1 209877181 209877204 -72316460 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1763 193 0 16 chr1 209877558 209877869 -72315795 - AluJo SINE Alu -4 308 3 522 319 128 13 chr1 209877894 209878129 -72315535 - L2 LINE L2 -2806 508 247 241 268 0 24 chr1 209878896 209878978 -72314686 - L1ME LINE L1 -366 5755 5676 207 211 115 0 chr1 209879000 209879052 -72314612 + L2 LINE L2 2608 2665 -649 1722 134 3 42 chr1 209879522 209879828 -72313836 - AluJb SINE Alu 0 312 19 237 302 104 21 chr1 209880206 209880302 -72313362 - L2 LINE L2 -2 3311 3208 505 264 71 15 chr1 209880961 209881158 -72312506 + L1M4 LINE L1 329 536 -6319 228 279 48 19 chr1 209881300 209881404 -72312260 + L1M4 LINE L1 801 907 -5948 387 225 18 141 chr1 209881524 209881751 -72311913 + L1M4 LINE L1 1206 1404 -5455 1148 246 0 8 chr1 209881859 209882123 -72311541 + L1M4 LINE L1 4332 4593 -2364 1430 186 8 23 chr1 209882127 209882391 -72311273 + AluJb SINE Alu 1 260 -52 935 190 62 33 chr1 209882393 209882635 -72311029 + L1M4 LINE L1 4605 4853 -2104 188 296 61 80 chr1 209882649 209882960 -72310704 - L2 LINE L2 -940 2374 2070 2343 104 73 22 chr1 209883711 209884068 -72309596 - THE1C LTR MaLR 0 375 1 2881 114 23 9 chr1 209884069 209884498 -72309166 - THE1C-int LTR MaLR -1 1579 1145 2147 135 67 14 chr1 209884512 209884868 -72308796 - THE1C LTR MaLR 0 375 1 268 309 252 0 chr1 209884946 209885069 -72308595 - MIR SINE MIR -71 191 38 269 255 75 0 chr1 209885187 209885281 -72308383 - L1MEd LINE L1 -6259 137 37 402 21 0 0 chr1 209886268 209886315 -72307349 + (CA)n Simple_repeat Simple_repeat 2 48 0 221 224 52 0 chr1 209886715 209886773 -72306891 - MIR SINE MIR -97 165 105 445 327 139 0 chr1 209887535 209887743 -72305921 - MIR SINE MIR -6 256 20 213 359 0 0 chr1 209887782 209887846 -72305818 + MIR3 SINE MIR 124 187 -21 207 146 0 0 chr1 209887929 209887970 -72305694 + (TG)n Simple_repeat Simple_repeat 1 41 0 475 292 64 12 chr1 209888161 209888332 -72305332 + MIR SINE MIR 20 199 -63 334 229 52 10 chr1 209889056 209889152 -72304512 - L1MC4a LINE L1 -1926 5882 5783 403 278 116 6 chr1 209889175 209889348 -72304316 - L2 LINE L2 0 3272 3081 * 577 248 109 0 chr1 209889320 209889457 -72304207 + MIR SINE MIR 25 176 -86 202 391 99 13 chr1 209889577 209889810 -72303854 - L2 LINE L2 -213 3059 2807 232 141 115 64 chr1 209889816 209889894 -72303770 - L1P3 LINE L1 -399 5755 5674 1233 85 6 17 chr1 209890199 209890376 -72303288 - AluY SINE Alu -10 301 127 328 218 234 8 chr1 209890488 209890612 -72303052 - MIR3 SINE MIR -7 201 50 442 231 192 0 chr1 209891294 209891438 -72302226 - MER5A DNA MER1_type 0 189 2 234 357 41 0 chr1 209891502 209891600 -72302064 + L2 LINE L2 3204 3305 -8 1573 163 42 17 chr1 209891692 209891981 -72301683 - AluJo SINE Alu -16 296 1 2199 113 33 0 chr1 209892272 209892574 -72301090 - AluSx SINE Alu 0 312 1 366 271 53 45 chr1 209893912 209894045 -72299619 + MIR3 SINE MIR 54 187 -21 215 127 18 36 chr1 209894056 209894111 -72299553 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 882 188 52 7 chr1 209894177 209894352 -72299312 - AluJo SINE Alu 0 304 123 231 270 63 145 chr1 209894395 209894457 -72299207 - MIR SINE MIR -116 146 81 2217 115 0 0 chr1 209894457 209894743 -72298921 - AluSx SINE Alu -26 286 1 231 270 63 145 chr1 209894743 209894839 -72298825 - MIR SINE MIR -181 81 1 216 276 11 23 chr1 209894996 209895083 -72298581 + CT-rich Low_complexity Low_complexity 1 86 0 282 204 124 95 chr1 209895249 209895386 -72298278 - MER5B DNA MER1_type -19 159 19 306 236 169 22 chr1 209895291 209895380 -72298284 + MER5A DNA MER1_type 64 165 -24 267 245 41 41 chr1 209895629 209895727 -72297937 + MER106B DNA MER1_type 961 1058 -1 327 289 134 0 chr1 209896079 209896176 -72297488 - L2 LINE L2 0 3272 3163 1370 182 58 107 chr1 209896739 209897151 -72296513 - MSTD LTR MaLR -4 392 1 947 199 34 34 chr1 209897151 209897357 -72296307 + LTR8 LTR ERV1 3 208 -483 1230 131 0 0 chr1 209897366 209897542 -72296122 - AluSg/x SINE Alu -3 309 134 7674 46 21 15 chr1 209897542 209898782 -72294882 - SVA Other Other -948 1386 230 772 129 86 50 chr1 209898895 209899035 -72294629 - AluJo SINE Alu -165 147 3 2891 81 98 5 chr1 209899317 209899727 -72293937 - LTR7 LTR ERV1 -2 448 1 313 250 18 18 chr1 209900488 209900652 -72293012 + (TA)n Simple_repeat Simple_repeat 1 164 0 312 209 22 39 chr1 209900663 209900845 -72292819 + (TA)n Simple_repeat Simple_repeat 2 180 0 41 90 0 0 chr1 209900845 209900956 -72292708 + AT_rich Low_complexity Low_complexity 1 111 0 279 222 28 28 chr1 209900956 209901136 -72292528 + (TA)n Simple_repeat Simple_repeat 1 180 0 874 151 0 16 chr1 209901149 209901275 -72292389 - FLAM_C SINE Alu -9 124 1 354 342 25 0 chr1 209901463 209901583 -72292081 + ERVL LTR ERVL 1540 1662 -4102 546 213 16 24 chr1 209901606 209901733 -72291931 + L2 LINE L2 3187 3312 -1 495 318 45 41 chr1 209901733 209901975 -72291689 + ERVL LTR ERVL 1734 1976 -3788 1926 147 0 7 chr1 209902046 209902375 -72291289 - AluSx SINE Alu 0 327 1 354 236 39 79 chr1 209902407 209902534 -72291130 + MER5A DNA MER1_type 43 164 -25 629 189 0 0 chr1 209903494 209903589 -72290075 - FRAM SINE Alu -23 153 59 200 143 0 48 chr1 209904163 209904205 -72289459 + (TTCTCC)n Simple_repeat Simple_repeat 3 42 0 2017 148 10 0 chr1 209904716 209905014 -72288650 + AluSx SINE Alu 1 301 -11 249 333 114 0 chr1 209905041 209905173 -72288491 - L2 LINE L2 -4 3268 3122 370 307 67 118 chr1 209905342 209906139 -72287525 - L2 LINE L2 -343 2971 2216 2159 133 0 0 chr1 209906302 209906603 -72287061 - AluSx SINE Alu -11 301 1 695 311 241 22 chr1 209906998 209907711 -72285953 + L3 LINE CR1 696 1564 -13 246 342 107 67 chr1 209908129 209908433 -72285231 + L2 LINE L2 2821 3146 -126 375 23 0 0 chr1 209908433 209908477 -72285187 + (TG)n Simple_repeat Simple_repeat 1 44 0 246 342 107 67 chr1 209908477 209908573 -72285091 + L2 LINE L2 3146 3237 -35 309 331 0 53 chr1 209908818 209908951 -72284713 - L2 LINE L2 -8 3264 3139 2288 112 0 0 chr1 209909150 209909462 -72284202 + AluSx SINE Alu 1 312 0 416 358 81 32 chr1 209909500 209910033 -72283631 - L2 LINE L2 -342 2972 2414 2302 97 3 3 chr1 209910150 209910448 -72283216 - AluSp SINE Alu -15 298 1 297 304 53 32 chr1 209910642 209910737 -72282927 - MIR SINE MIR -56 206 114 2057 123 0 0 chr1 209910737 209911021 -72282643 + AluSx SINE Alu 23 306 -6 297 304 53 32 chr1 209911021 209911126 -72282538 - MIR SINE MIR -148 114 3 180 0 0 0 chr1 209912317 209912337 -72281327 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 299 299 110 6 chr1 209912606 209912770 -72280894 + MER117 DNA MER1_type 7 187 -10 282 95 0 0 chr1 209913781 209913823 -72279841 + (TG)n Simple_repeat Simple_repeat 2 43 0 186 43 0 0 chr1 209913862 209913885 -72279779 + (TG)n Simple_repeat Simple_repeat 2 24 0 509 275 99 0 chr1 209914147 209914289 -72279375 + L2 LINE L2 2555 2710 -604 11708 176 49 61 chr1 209914303 209914951 -72278713 + L1M3 LINE L1 17 671 -5711 195 42 0 0 chr1 209914951 209914975 -72278689 + (TAA)n Simple_repeat Simple_repeat 1 24 0 11708 176 49 61 chr1 209914975 209916734 -72276930 + L1M3 LINE L1 671 2371 -4011 2368 85 0 3 chr1 209916734 209917039 -72276625 + AluY SINE Alu 1 304 -7 11708 176 49 61 chr1 209917039 209918152 -72275512 + L1M3 LINE L1 2371 3496 -2886 2095 121 7 0 chr1 209918161 209918468 -72275196 + AluSx SINE Alu 1 309 -3 958 233 59 33 chr1 209918528 209918799 -72274865 + AluJo SINE Alu 6 283 -29 7914 208 25 36 chr1 209918816 209918987 -72274677 + L1M3 LINE L1 3527 3698 -2721 2924 36 6 0 chr1 209918987 209919346 -72274318 + L1PA5 LINE L1 5794 6154 0 7914 208 25 36 chr1 209919346 209920671 -72272993 + L1M3 LINE L1 3698 4985 -1434 8749 35 8 1 chr1 209920671 209922494 -72271170 + L1PA4 LINE L1 4324 6152 -3 7914 208 25 36 chr1 209922494 209923480 -72270184 + L1M3 LINE L1 4985 5981 -438 50 42 0 0 chr1 210023558 210023629 -72170035 + AT_rich Low_complexity Low_complexity 1 71 0 2891 81 98 5 chr1 210024395 210024805 -72168859 + LTR7 LTR ERV1 1 448 -2 857 129 88 64 chr1 210025086 210025257 -72168407 + AluJo SINE Alu 3 177 -135 430 308 53 6 chr1 210025799 210025968 -72167696 + MIR SINE MIR 20 196 -66 410 300 138 17 chr1 210026048 210026288 -72167376 - L2 LINE L2 0 3272 3004 1211 164 33 9 chr1 210026408 210026622 -72167042 - MER20 DNA MER1_type 0 219 1 229 216 0 20 chr1 210026680 210026731 -72166933 + L2 LINE L2 3262 3311 -2 396 313 27 27 chr1 210026847 210026994 -72166670 + MIR SINE MIR 68 214 -48 252 350 83 8 chr1 210027564 210027684 -72165980 + MIR SINE MIR 22 150 -112 428 223 50 16 chr1 210027690 210027811 -72165853 + MER46C DNA MER2_type 6 130 -208 2823 51 31 0 chr1 210027942 210028292 -72165372 - SVA Other Other -969 417 57 417 20 0 0 chr1 210028292 210028342 -72165322 + (GGGAGA)n Simple_repeat Simple_repeat 1 50 0 7795 246 58 36 chr1 210028343 210028802 -72164862 - L1 LINE L1 -768 5378 4930 2108 105 7 26 chr1 210028802 210029106 -72164558 - AluSp SINE Alu -15 298 1 7795 246 58 36 chr1 210029106 210030193 -72163471 - L1 LINE L1 -1216 4930 3868 2247 119 3 0 chr1 210030193 210030504 -72163160 - AluSx SINE Alu 0 312 1 7795 246 58 36 chr1 210030504 210031184 -72162480 - L1 LINE L1 -2278 3868 3093 1734 179 17 0 chr1 210031184 210031480 -72162184 + AluJo SINE Alu 1 301 -11 7795 246 58 36 chr1 210031480 210031660 -72162004 - L1 LINE L1 -3053 3093 2918 353 261 108 0 chr1 210031677 210031788 -72161876 - L1 LINE L1 -3115 3031 2909 786 67 29 0 chr1 210031789 210031894 -72161770 + L1M1 LINE L1 5388 5495 -807 1389 233 54 0 chr1 210032112 210032429 -72161235 - MER58B DNA MER1_type -3 338 5 211 204 61 0 chr1 210032642 210032691 -72160973 - MIR SINE MIR -93 169 118 6202 143 46 165 chr1 210032699 210034418 -72159246 + L1MA4 LINE L1 3 1518 -5645 620 128 0 0 chr1 210034418 210034512 -72159152 + L1PA13 LINE L1 6070 6163 0 228 262 52 17 chr1 210034524 210034696 -72158968 + (TA)n Simple_repeat Simple_repeat 2 179 0 2070 196 68 43 chr1 210034707 210035222 -72158442 - L1MA10 LINE L1 -2 6332 5805 6113 145 28 7 chr1 210035326 210037044 -72156620 + L1MA4 LINE L1 5562 7317 -4 275 325 25 0 chr1 210038599 210038679 -72154985 - L2 LINE L2 -22 3250 3169 254 305 57 21 chr1 210038826 210039000 -72154664 + MER63 DNA MER1_type 27 1058 -3 249 217 121 12 chr1 210039002 210039085 -72154579 + L2 LINE L2 2449 2540 -774 728 215 93 5 chr1 210039250 210039455 -72154209 - L1MC4 LINE L1 -442 7600 7378 645 184 29 0 chr1 210039465 210039568 -72154096 - FLAM_C SINE Alu -19 124 19 612 216 39 13 chr1 210039569 210039722 -72153942 - L1MC4a LINE L1 -505 7303 7147 * 1180 261 95 6 chr1 210039707 210040064 -72153600 - L1MC4 LINE L1 -958 7084 6696 * 4407 194 22 51 chr1 210040061 210040345 -72153319 - L1P LINE L1 -3167 2979 2688 2281 116 0 0 chr1 210040345 210040656 -72153008 - AluSq SINE Alu -2 311 1 4407 194 22 51 chr1 210040656 210041467 -72152197 - L1P LINE L1 -3458 2688 1916 4168 229 31 9 chr1 210041467 210042517 -72151147 - L1M4 LINE L1 -883 6682 5610 2119 113 14 0 chr1 210042882 210043175 -72150489 + AluSc SINE Alu 1 297 -12 633 200 107 7 chr1 210043315 210043465 -72150199 + L1M3f LINE L1 1238 1402 -5163 * 12286 199 34 15 chr1 210043439 210047139 -72146525 + L1M3f LINE L1 2428 6199 -1366 264 100 0 0 chr1 210048575 210048615 -72145049 + (TG)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr1 210048654 210048677 -72144987 + (TG)n Simple_repeat Simple_repeat 2 24 0 527 272 101 0 chr1 210048923 210049081 -72144583 + L2 LINE L2 2537 2710 -604 9713 163 47 27 chr1 210049095 210049744 -72143920 + L1M4c LINE L1 17 652 -5732 222 37 0 0 chr1 210049744 210049771 -72143893 + (TAA)n Simple_repeat Simple_repeat 1 27 0 9713 163 47 27 chr1 210049771 210050969 -72142695 + L1M4c LINE L1 652 1901 -4483 457 195 35 0 chr1 210051375 210051462 -72142202 - L1M4 LINE L1 -3798 3767 3678 4212 186 89 7 chr1 210051462 210052225 -72141439 - LTR1B LTR ERV1 0 826 1 8358 128 34 27 chr1 210052225 210052964 -72140700 - HUERS-P2 LTR ERV1 0 3088 2335 2075 136 10 0 chr1 210052964 210053259 -72140405 - AluSx SINE Alu -14 298 1 8358 128 34 27 chr1 210053259 210053812 -72139852 - HUERS-P2 LTR ERV1 -753 2335 1787 7380 180 55 26 chr1 210053817 210055239 -72138425 - HUERS-P2 LTR ERV1 -1528 1560 98 906 169 6 36 chr1 210055239 210055405 -72138259 - LTR1B LTR ERV1 -665 161 1 827 184 44 0 chr1 210055409 210055567 -72138097 - L1M4 LINE L1 -3892 3673 3509 231 250 0 0 chr1 210055797 210055841 -72137823 + L2 LINE L2 3206 3249 -23 1038 206 36 24 chr1 210055866 210056113 -72137551 + MLT1A2 LTR MaLR 1 250 -124 2456 76 0 3 chr1 210056202 210056504 -72137160 - AluY SINE Alu -10 301 1 1724 175 0 29 chr1 210056615 210056924 -72136740 + AluSx SINE Alu 1 300 -12 3940 98 2 6 chr1 210056929 210057442 -72136222 - MER9 LTR ERVK 0 511 1 46 19 0 0 chr1 210057546 210057599 -72136065 + AT_rich Low_complexity Low_complexity 1 53 0 232 220 0 0 chr1 210057833 210057883 -72135781 - MLT1J LTR MaLR -45 466 417 2053 283 75 21 chr1 210057933 210058966 -72134698 - L2 LINE L2 -73 3240 2149 738 239 5 35 chr1 210058989 210059186 -72134478 - MLT1J LTR MaLR -318 193 3 228 329 6 46 chr1 210059254 210059490 -72134174 + GA-rich Low_complexity Low_complexity 1 226 0 427 233 0 0 chr1 210059560 210059663 -72134001 + AluJb SINE Alu 210 312 0 928 70 9 0 chr1 210060463 210060578 -72133086 - AluSg/x SINE Alu -23 287 172 578 287 72 29 chr1 210060751 210061030 -72132634 - L1ME LINE L1 -335 5786 5496 363 306 87 18 chr1 210061229 210061448 -72132216 - L1ME LINE L1 -846 5300 5067 4401 194 26 30 chr1 210061727 210063411 -72130253 + L1MB8 LINE L1 4500 6175 -3 959 167 0 12 chr1 210063426 210063588 -72130076 - FRAM SINE Alu -19 157 1 337 208 313 0 chr1 210064236 210064332 -72129332 + MER5B DNA MER1_type 1 126 -52 438 262 10 0 chr1 210064332 210064435 -72129229 + L1MCa LINE L1 5 108 -6318 6478 143 65 14 chr1 210064435 210065608 -72128056 + Ricksha DNA DNA 2002 3233 -13 709 191 62 12 chr1 210065504 210065666 -72127998 - Ricksha DNA DNA -1876 170 1 * 311 284 28 14 chr1 210065805 210065946 -72127718 + LTR33 LTR ERVL 369 511 -10 25 0 0 0 chr1 210067673 210067698 -72125966 + AT_rich Low_complexity Low_complexity 1 25 0 * 281 222 94 43 chr1 210067692 210067809 -72125855 - L2 LINE L2 -975 2339 2217 1666 236 36 18 chr1 210067838 210068288 -72125376 - LTR40b LTR ERVL -4 458 1 1189 278 100 44 chr1 210068288 210068511 -72125153 + MER20B DNA MER1_type 16 225 -558 1629 178 0 11 chr1 210068511 210068798 -72124866 - AluSx SINE Alu -8 304 21 1189 278 100 44 chr1 210068798 210069048 -72124616 + MER20B DNA MER1_type 225 516 -267 830 261 49 0 chr1 210069173 210069399 -72124265 - L2 LINE L2 -1338 1976 1740 298 287 125 37 chr1 210070389 210070525 -72123139 + MIR SINE MIR 3 150 -112 5837 146 28 14 chr1 210070864 210071716 -72121948 - L1PA16 LINE L1 -21 6145 5247 2170 104 14 10 chr1 210071716 210072013 -72121651 - AluSx SINE Alu -14 298 1 5837 146 28 14 chr1 210072013 210072640 -72121024 - L1PA16 LINE L1 -919 5247 4630 2136 114 48 87 chr1 210072761 210073243 -72120421 + SVA Other Other 404 866 -520 459 123 46 15 chr1 210073257 210073387 -72120277 + SVA Other Other 661 794 -592 6249 68 29 38 chr1 210073400 210074363 -72119301 + SVA Other Other 433 1386 0 4892 158 7 52 chr1 210074369 210074444 -72119220 + L1MA4 LINE L1 5364 5441 -859 2457 81 3 3 chr1 210074444 210074752 -72118912 + AluSq SINE Alu 1 308 -5 194 61 0 30 chr1 210074752 210074785 -72118879 + (CCA)n Simple_repeat Simple_repeat 1 32 0 4892 158 7 52 chr1 210074785 210075046 -72118618 + L1MA4 LINE L1 5440 5711 -589 1742 170 27 3 chr1 210075046 210075340 -72118324 + AluJb SINE Alu 1 301 -11 4892 158 7 52 chr1 210075340 210075753 -72117911 + L1MA4 LINE L1 5711 6063 -237 2422 100 3 0 chr1 210075753 210076062 -72117602 + AluSp SINE Alu 1 310 -3 4892 158 7 52 chr1 210076062 210076289 -72117375 + L1MA4 LINE L1 6063 6299 -1 261 268 31 38 chr1 210076299 210076484 -72117180 + L1MCa LINE L1 2389 2605 -3947 541 281 27 0 chr1 210076787 210076972 -72116692 + L1MCa LINE L1 3589 3778 -2648 589 300 63 41 chr1 210076973 210077433 -72116231 + L1MCa LINE L1 4347 4816 -1610 3170 254 51 68 chr1 210077445 210078759 -72114905 + L1M4 LINE L1 3 1295 -5247 2493 90 0 3 chr1 210078759 210079071 -72114593 + AluSx SINE Alu 1 311 -1 3170 254 51 68 chr1 210079071 210079120 -72114544 + L1M4 LINE L1 1295 1343 -5199 3780 79 16 51 chr1 210079136 210079705 -72113959 - L1MA2 LINE L1 0 6304 5756 235 149 43 43 chr1 210079719 210079766 -72113898 + L1MA2 LINE L1 5693 5739 -565 272 258 21 10 chr1 210079778 210079875 -72113789 - L1MA2 LINE L1 -551 5753 5656 785 223 45 0 chr1 210080630 210080787 -72112877 + MER96 DNA MER1_type? 12 175 0 188 397 0 0 chr1 210080787 210080860 -72112804 + L2 LINE L2 2631 2703 -611 2129 122 3 0 chr1 210080887 210081182 -72112482 - AluSx SINE Alu -16 296 1 2961 229 47 14 chr1 210081203 210081942 -72111722 + L1ME1 LINE L1 37 800 -5596 1680 149 63 45 chr1 210081970 210082305 -72111359 - MER46B DNA MER2_type -2 234 19 3735 197 40 53 chr1 210082305 210082502 -72111162 + L1ME1 LINE L1 5247 5445 -790 2430 79 76 23 chr1 210082502 210082844 -72110820 + THE1B LTR MaLR 3 362 -2 3735 197 40 53 chr1 210082844 210083634 -72110030 + L1ME1 LINE L1 5445 6229 -6 753 306 140 16 chr1 210083661 210084040 -72109624 - L2 LINE L2 -1487 1827 1402 199 258 82 107 chr1 210084070 210084229 -72109435 - L2 LINE L2 -2343 971 817 2245 115 3 0 chr1 210084585 210084880 -72108784 - AluSx SINE Alu -16 296 1 312 263 173 28 chr1 210084947 210085359 -72108305 + L1P5 LINE L1 5279 5755 -429 202 391 99 13 chr1 210085365 210085598 -72108066 + L2 LINE L2 2807 3059 -213 577 248 109 0 chr1 210085718 210085855 -72107809 - MIR SINE MIR -86 176 25 403 278 116 6 chr1 210085827 210086000 -72107664 + L2 LINE L2 3081 3272 0 * 334 229 52 10 chr1 210086023 210086119 -72107545 + L1MC4a LINE L1 5783 5882 -1926 334 242 124 53 chr1 210086118 210086441 -72107223 + L1MC4a LINE L1 5769 6118 -3 475 292 64 12 chr1 210086948 210087119 -72106545 - MIR SINE MIR -63 199 20 207 146 0 0 chr1 210087310 210087351 -72106313 + (CA)n Simple_repeat Simple_repeat 1 41 0 213 359 0 0 chr1 210087434 210087498 -72106166 - MIR3 SINE MIR -21 187 124 445 327 139 0 chr1 210087537 210087745 -72105919 + MIR SINE MIR 20 256 -6 221 224 52 0 chr1 210088507 210088565 -72105099 + MIR SINE MIR 105 165 -97 21 0 0 0 chr1 210089035 210089056 -72104608 + AT_rich Low_complexity Low_complexity 1 21 0 4202 168 20 6 chr1 210089262 210090239 -72103425 + L1PB4 LINE L1 4531 5520 -636 3308 115 40 14 chr1 210090243 210090267 -72103397 + L1PB4 LINE L1 5636 5658 -498 1585 151 0 0 chr1 210090267 210090492 -72103172 - AluSx SINE Alu -87 225 1 3308 115 40 14 chr1 210090492 210090963 -72102701 + L1PB4 LINE L1 5658 6144 -12 261 277 64 64 chr1 210091468 210091609 -72102055 + MIR3 SINE MIR 21 161 -47 630 273 83 5 chr1 210091632 210091837 -72101827 + MIR SINE MIR 14 234 -28 334 373 60 27 chr1 210091924 210092109 -72101555 - L2 LINE L2 -9 3263 3073 224 294 29 0 chr1 210092293 210092361 -72101303 + L2 LINE L2 3201 3270 -2 2496 84 0 0 chr1 210093205 210093515 -72100149 - AluSg SINE Alu 0 310 1 408 264 23 46 chr1 210093575 210093742 -72099922 - MIR3 SINE MIR -59 149 3 180 194 167 0 chr1 210093876 210093912 -72099752 + MIR3 SINE MIR 116 157 -51 231 361 9 9 chr1 210094223 210094331 -72099333 - L2 LINE L2 -218 3054 2947 1926 179 30 35 chr1 210095204 210095762 -72097902 + MLT2A1 LTR ERVL 1 554 0 381 278 85 39 chr1 210096302 210096519 -72097145 - MIR SINE MIR -9 253 20 307 237 174 59 chr1 210098783 210099053 -72094611 - L1ME4a LINE L1 -22 6099 5799 27 0 0 0 chr1 210099116 210099143 -72094521 + AT_rich Low_complexity Low_complexity 1 27 0 2369 149 5 14 chr1 210099541 210099910 -72093754 + MER47A DNA MER2_type 1 366 0 279 222 28 28 chr1 210100289 210100469 -72093195 + (TA)n Simple_repeat Simple_repeat 1 180 0 874 151 0 16 chr1 210100482 210100608 -72093056 - FLAM_C SINE Alu -9 124 1 354 342 25 0 chr1 210100796 210100916 -72092748 + ERVL LTR ERVL 1540 1662 -4102 546 213 16 24 chr1 210100939 210101066 -72092598 + L2 LINE L2 3187 3312 -1 495 318 45 41 chr1 210101066 210101308 -72092356 + ERVL LTR ERVL 1734 1976 -3788 1926 147 0 7 chr1 210101379 210101708 -72091956 - AluSx SINE Alu 0 327 1 354 236 39 79 chr1 210101740 210101867 -72091797 + MER5A DNA MER1_type 43 164 -25 629 189 0 0 chr1 210102827 210102922 -72090742 - FRAM SINE Alu -23 153 59 200 143 0 48 chr1 210103496 210103538 -72090126 + (TTCTCC)n Simple_repeat Simple_repeat 3 42 0 2017 148 10 0 chr1 210104049 210104347 -72089317 + AluSx SINE Alu 1 301 -11 253 333 114 0 chr1 210104374 210104506 -72089158 - L2 LINE L2 -4 3268 3122 395 298 88 112 chr1 210104675 210105527 -72088137 - L2 LINE L2 -343 2971 2140 2257 120 0 0 chr1 210105636 210105937 -72087727 - AluSx SINE Alu -11 301 1 695 311 241 22 chr1 210106332 210107045 -72086619 + L3 LINE CR1 696 1564 -13 246 342 107 67 chr1 210107463 210107767 -72085897 + L2 LINE L2 2821 3146 -126 339 25 0 0 chr1 210107767 210107807 -72085857 + (TG)n Simple_repeat Simple_repeat 1 40 0 246 342 107 67 chr1 210107807 210107903 -72085761 + L2 LINE L2 3146 3237 -35 273 333 8 53 chr1 210108148 210108280 -72085384 - L2 LINE L2 -8 3264 3139 2230 110 7 0 chr1 210108479 210108789 -72084875 + AluSx SINE Alu 1 312 0 441 357 77 26 chr1 210108827 210109359 -72084305 - L2 LINE L2 -342 2972 2414 2302 97 3 3 chr1 210109476 210109774 -72083890 - AluSp SINE Alu -15 298 1 301 319 44 34 chr1 210109968 210110063 -72083601 - MIR SINE MIR -56 206 113 1956 122 0 0 chr1 210110063 210110348 -72083316 + AluSx SINE Alu 23 307 0 301 319 44 34 chr1 210110348 210110456 -72083208 - MIR SINE MIR -149 113 3 1823 303 100 53 chr1 210110980 210112172 -72081492 + ERVL LTR ERVL 3647 4894 -870 802 121 8 0 chr1 210112173 210112297 -72081367 - MER3 DNA MER1_type 0 2624 2500 425 189 0 0 chr1 210112300 210112374 -72081290 - MER3 DNA MER1_type -95 114 41 345 275 12 0 chr1 210112434 210112514 -72081150 + ERVL LTR ERVL 4984 5064 -700 957 279 35 43 chr1 210112898 210113293 -72080371 + LTR16A LTR ERVL 19 410 -40 2278 90 0 17 chr1 210113813 210114112 -72079552 + AluY SINE Alu 2 295 -16 237 299 41 0 chr1 210114286 210114383 -72079281 - MARNA DNA Mariner -7 579 479 656 170 0 9 chr1 210114399 210114511 -72079153 - AluJo SINE Alu -174 138 28 328 313 31 8 chr1 210114632 210114760 -72078904 - MARNA DNA Mariner -169 417 287 288 305 19 71 chr1 210115088 210115222 -72078442 + MIR SINE MIR 17 126 -82 2165 102 3 0 chr1 210115222 210115506 -72078158 + AluSx SINE Alu 1 285 -27 288 305 19 71 chr1 210115506 210115525 -72078139 + MIR SINE MIR 126 144 -64 1509 175 102 0 chr1 210115549 210115823 -72077841 + AluJb SINE Alu 1 302 -10 321 284 11 0 chr1 210116413 210116501 -72077163 - MIR SINE MIR -112 150 62 521 273 66 16 chr1 210116528 210116711 -72076953 - MER112 DNA MER1_type -4 256 65 579 236 107 52 chr1 210116832 210117065 -72076599 - MIR SINE MIR 0 262 17 581 222 217 5 chr1 210117287 210117485 -72076179 + MIR SINE MIR 23 262 0 1948 5 0 0 chr1 210117990 210118196 -72075468 - AluYa5 SINE Alu -7 304 99 583 314 102 58 chr1 210118958 210119391 -72074273 - L2 LINE L2 0 3272 2821 26 64 0 0 chr1 210119659 210119706 -72073958 + AT_rich Low_complexity Low_complexity 1 47 0 2303 111 3 0 chr1 210119764 210120071 -72073593 + AluSp SINE Alu 1 308 -5 1548 154 6 134 chr1 210120084 210120428 -72073236 + AluSx SINE Alu 1 300 -2 22 35 0 0 chr1 210120441 210120470 -72073194 + AT_rich Low_complexity Low_complexity 1 29 0 545 157 0 0 chr1 210120752 210120835 -72072829 + AluJ/FRAM SINE Alu 221 303 -9 2300 72 7 3 chr1 210121640 210121931 -72071733 + AluSg SINE Alu 1 292 -18 200 270 258 0 chr1 210122056 210122145 -72071519 + MIR SINE MIR 77 188 -74 1625 157 18 18 chr1 210122397 210122702 -72070962 + AluJb SINE Alu 1 305 0 388 162 15 0 chr1 210124516 210124584 -72069080 - MLT1A1 LTR MaLR 0 365 297 1454 147 0 77 chr1 210124584 210124843 -72068821 + AluJb SINE Alu 1 239 -73 1026 193 26 80 chr1 210124843 210124885 -72068779 - LTR8 LTR ERV1 -445 246 203 2090 127 0 43 chr1 210124885 210125021 -72068643 + AluSx SINE Alu 1 141 -171 213 39 0 0 chr1 210125021 210125047 -72068617 + (TCTCCC)n Simple_repeat Simple_repeat 5 30 0 11248 39 6 31 chr1 210125056 210126484 -72067180 + SVA Other Other 32 1386 0 2090 127 0 43 chr1 210126484 210126660 -72067004 + AluSx SINE Alu 149 309 -3 1026 193 26 80 chr1 210126660 210126875 -72066789 - LTR8 LTR ERV1 -488 203 3 1347 184 58 107 chr1 210126875 210127287 -72066377 + MSTD LTR MaLR 1 392 -4 327 289 134 0 chr1 210127850 210127947 -72065717 + L2 LINE L2 3163 3272 0 285 235 41 41 chr1 210128299 210128397 -72065267 - MER106B DNA MER1_type -1 1058 961 282 204 124 95 chr1 210128640 210128777 -72064887 + MER5B DNA MER1_type 19 159 -19 306 236 169 22 chr1 210128646 210128735 -72064929 - MER5A DNA MER1_type -24 165 64 216 276 11 23 chr1 210128943 210129030 -72064634 + GA-rich Low_complexity Low_complexity 1 86 0 231 270 63 145 chr1 210129187 210129283 -72064381 + MIR SINE MIR 1 81 -181 2244 112 0 0 chr1 210129283 210129569 -72064095 + AluSx SINE Alu 1 286 -26 231 270 63 145 chr1 210129569 210129631 -72064033 + MIR SINE MIR 81 146 -116 855 195 52 7 chr1 210129674 210129849 -72063815 + AluJo SINE Alu 123 304 0 215 127 18 36 chr1 210129915 210129970 -72063694 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 366 271 53 45 chr1 210129981 210130114 -72063550 - MIR3 SINE MIR -21 187 54 2150 109 0 4 chr1 210131381 210131657 -72062007 + AluSq SINE Alu 21 295 -18 827 172 0 16 chr1 210131657 210131785 -72061879 - AluJo/FLAM SINE Alu -186 126 1 4146 179 25 5 chr1 210131789 210132620 -72061044 - L1 LINE L1 -1510 4636 3789 577 282 26 56 chr1 210133236 210133470 -72060194 + MIR SINE MIR 28 254 -8 201 196 20 0 chr1 210133489 210133540 -72060124 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 201 274 53 44 chr1 210133614 210133727 -72059937 - MIR SINE MIR -75 187 74 2196 103 40 0 chr1 210134007 210134307 -72059357 + AluSx SINE Alu 1 312 0 1644 186 36 0 chr1 210135090 210135370 -72058294 - AluJb SINE Alu -22 290 1 1852 127 7 4 chr1 210135415 210135691 -72057973 - AluSx SINE Alu -35 277 1 1588 135 135 8 chr1 210136522 210136781 -72056883 + AluSg1 SINE Alu 1 292 -17 440 270 83 83 chr1 210137810 210138281 -72055383 + L1MEd LINE L1 2 472 -5647 2355 153 26 85 chr1 210138472 210138968 -72054696 - MLT1C LTR MaLR 0 467 1 546 325 47 13 chr1 210139277 210139469 -72054195 - MIR SINE MIR -62 146 1 490 273 8 0 chr1 210139807 210139928 -72053736 + MIR SINE MIR 48 169 -93 225 0 0 0 chr1 210139971 210139996 -72053668 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1265 198 4 12 chr1 210140003 210140246 -72053418 - AluJo SINE Alu -48 264 24 234 0 0 0 chr1 210140257 210140283 -72053381 + (T)n Simple_repeat Simple_repeat 1 26 0 864 303 54 82 chr1 210140306 210140840 -72052824 + MLT1L LTR MaLR 93 611 -4 21 0 0 0 chr1 210140918 210140939 -72052725 + AT_rich Low_complexity Low_complexity 1 21 0 1934 144 334 35 chr1 210140969 210141448 -72052216 + LTR29 LTR ERV1 1 622 0 1414 57 0 0 chr1 210141645 210141820 -72051844 - AluY SINE Alu -10 301 127 294 228 244 8 chr1 210141932 210142055 -72051609 - MIR3 SINE MIR -7 201 50 3032 168 19 11 chr1 210142790 210143622 -72050042 - L1M1 LINE L1 -4065 1263 744 1371 166 28 0 chr1 210143623 210143840 -72049824 - AluJb SINE Alu -8 304 82 3772 189 26 9 chr1 210143841 210144519 -72049145 - L1M1 LINE L1 -4628 700 11 612 279 99 47 chr1 210144871 210145571 -72048093 - L1MEc LINE L1 -4720 1676 941 334 277 62 34 chr1 210146092 210146269 -72047395 - L1MEc LINE L1 -5893 312 131 186 43 0 0 chr1 210146269 210146292 -72047372 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1764 193 0 16 chr1 210146646 210146957 -72046707 - AluJo SINE Alu -4 308 3 539 315 128 13 chr1 210146982 210147217 -72046447 - L2 LINE L2 -2806 508 247 241 268 0 24 chr1 210147984 210148066 -72045598 - L1ME LINE L1 -366 5755 5676 207 211 115 0 chr1 210148088 210148140 -72045524 + L2 LINE L2 2608 2665 -649 1686 139 3 36 chr1 210148610 210148911 -72044753 - AluJb SINE Alu -3 309 19 237 302 104 21 chr1 210149289 210149385 -72044279 - L2 LINE L2 -2 3311 3208 474 269 71 15 chr1 210150047 210150244 -72043420 + L1M4 LINE L1 16 223 -6319 1546 222 51 61 chr1 210150608 210151136 -72042528 + L1M4 LINE L1 875 1397 -5145 488 261 44 10 chr1 210151136 210151339 -72042325 + L1M4 LINE L1 1665 1874 -4772 * 1636 270 45 26 chr1 210151307 210151971 -72041693 + L1M4 LINE L1 3604 4280 -2364 1429 175 11 23 chr1 210151975 210152238 -72041426 + AluJb SINE Alu 1 260 -52 935 190 62 33 chr1 210152240 210152482 -72041182 + L1M4 LINE L1 4292 4540 -2104 188 296 61 80 chr1 210152496 210152807 -72040857 - L2 LINE L2 -940 2374 2070 2343 104 73 22 chr1 210153565 210153922 -72039742 - THE1C LTR MaLR 0 375 1 2881 114 23 9 chr1 210153923 210154352 -72039312 - THE1C-int LTR MaLR -1 1579 1145 2147 135 67 14 chr1 210154366 210154722 -72038942 - THE1C LTR MaLR 0 375 1 268 309 252 0 chr1 210154800 210154923 -72038741 - MIR SINE MIR -71 191 38 269 255 75 0 chr1 210155041 210155135 -72038529 - L1MEc LINE L1 -6259 137 37 330 26 0 0 chr1 210156122 210156161 -72037503 + (CA)n Simple_repeat Simple_repeat 2 40 0 3547 177 51 50 chr1 210156469 210156965 -72036699 + L1MB3 LINE L1 1882 2376 -4006 2452 82 0 3 chr1 210156965 210157270 -72036394 + AluY SINE Alu 1 304 -7 3547 177 51 50 chr1 210157270 210158386 -72035278 + L1MB3 LINE L1 2376 3496 -2886 2137 114 13 3 chr1 210158395 210158703 -72034961 + AluSx SINE Alu 1 311 -1 1190 213 60 22 chr1 210158761 210159029 -72034635 + AluJo SINE Alu 6 283 -29 8060 203 26 33 chr1 210159046 210159217 -72034447 + L1MB3 LINE L1 3527 3698 -2721 3125 39 6 0 chr1 210159217 210159576 -72034088 + L1PA5 LINE L1 5794 6154 0 8060 203 26 33 chr1 210159576 210160900 -72032764 + L1MB3 LINE L1 3698 5030 -1389 9397 33 8 5 chr1 210160900 210162728 -72030936 + L1PA4 LINE L1 4324 6154 -1 8060 203 26 33 chr1 210162728 210164142 -72029522 + L1MB3 LINE L1 5030 6416 -3 1399 251 58 50 chr1 210164151 210164747 -72028917 + L2 LINE L2 2702 3313 0 448 240 40 27 chr1 210165537 210165687 -72027977 - L2 LINE L2 0 3313 3162 275 200 187 0 chr1 210166841 210166916 -72026748 + MER58 DNA MER1_type 11 99 -116 358 159 32 0 chr1 210166922 210166985 -72026679 + MER58 DNA MER1_type 2355 2419 -1 2126 162 37 9 chr1 210168640 210168968 -72024696 + MER1B DNA MER1_type 1 337 0 1274 318 51 16 chr1 210169293 210169783 -72023881 - LTR33 LTR ERVL 0 521 15 425 306 10 47 chr1 210169830 210170023 -72023641 - MIR SINE MIR -50 212 27 968 269 141 45 chr1 210170301 210170956 -72022708 + L2 LINE L2 2431 3151 -162 1559 296 44 74 chr1 210170963 210171986 -72021678 + L1M3a LINE L1 2 993 -4962 911 196 0 0 chr1 210172040 210172198 -72021466 - FRAM SINE Alu -21 155 1 6468 215 57 84 chr1 210172198 210174233 -72019431 + L1M4c LINE L1 925 3014 -3368 930 209 0 0 chr1 210174233 210174391 -72019273 + FRAM SINE Alu 2 159 -17 6468 215 57 84 chr1 210174391 210174408 -72019256 + L1M4c LINE L1 3014 3030 -3352 2091 135 7 0 chr1 210174408 210174704 -72018960 - AluSx SINE Alu -14 298 1 6468 215 57 84 chr1 210174704 210175648 -72018016 + L1M4c LINE L1 3030 3966 -2416 1589 201 24 0 chr1 210175648 210175942 -72017722 + AluJo SINE Alu 1 301 -11 6468 215 57 84 chr1 210175942 210176402 -72017262 + L1M4c LINE L1 3966 4437 -1945 707 131 15 39 chr1 210176533 210176663 -72017001 - MER53 DNA DNA -62 127 1 821 142 0 0 chr1 210177132 210177283 -72016381 - AluJb SINE Alu 0 312 162 402 269 66 22 chr1 210177466 210177648 -72016016 - MIR SINE MIR -32 230 41 241 282 78 39 chr1 210178358 210178461 -72015203 + L2 LINE L2 3194 3300 -13 215 263 0 0 chr1 210178438 210178495 -72015169 - L2 LINE L2 -2 3311 3255 * 2316 214 81 29 chr1 210179534 210180127 -72013537 + MLT1E2 LTR MaLR 3 626 0 339 85 0 0 chr1 210180391 210180438 -72013226 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 261 238 155 107 chr1 210180450 210180618 -72013046 + MER102b DNA MER1_type 161 336 -5 377 294 18 30 chr1 210181835 210182020 -72011644 + MIR SINE MIR 23 205 -57 181 250 0 0 chr1 210182162 210182214 -72011450 - MIR SINE MIR -120 88 37 2390 148 8 5 chr1 210183110 210183502 -72010162 + L1PB4 LINE L1 5763 6155 -1 512 253 56 6 chr1 210184737 210184899 -72008765 + MIR3 SINE MIR 6 175 -33 1630 207 71 34 chr1 210185189 210185285 -72008379 + MSTD LTR MaLR 1 92 -304 2040 139 3 20 chr1 210185285 210185586 -72008078 + AluSp SINE Alu 1 296 -17 1630 207 71 34 chr1 210185586 210185871 -72007793 + MSTD LTR MaLR 92 396 0 2252 82 3 0 chr1 210186088 210186370 -72007294 + AluY SINE Alu 13 295 -16 2045 166 19 0 chr1 210186402 210186727 -72006937 - MER7A DNA MER2_type -17 329 1 293 293 30 6 chr1 210186727 210186894 -72006770 + (TA)n Simple_repeat Simple_repeat 2 172 0 602 236 26 40 chr1 210188210 210188388 -72005276 + MIR SINE MIR 34 206 -56 226 226 22 109 chr1 210189076 210189213 -72004451 + Charlie8 DNA MER1_type 40 164 -2253 320 272 16 98 chr1 210190543 210190616 -72003048 - L2 LINE L2 -502 2812 2735 2384 82 0 0 chr1 210190616 210190907 -72002757 - AluY SINE Alu -20 291 1 320 272 16 98 chr1 210190907 210191017 -72002647 - L2 LINE L2 -579 2735 2644 242 396 52 0 chr1 210191219 210191411 -72002253 + L2 LINE L2 3103 3304 -9 2181 80 3 27 chr1 210291540 210291839 -71901825 - AluSg SINE Alu -17 293 2 37 23 0 0 chr1 210291839 210291883 -71901781 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 210291954 210291975 -71901689 + AT_rich Low_complexity Low_complexity 1 21 0 4138 168 20 6 chr1 210292181 210293159 -71900505 + L1PB4 LINE L1 4531 5520 -636 3120 115 40 14 chr1 210293163 210293187 -71900477 + L1PB4 LINE L1 5636 5658 -498 1503 151 0 0 chr1 210293187 210293412 -71900252 - AluSx SINE Alu -87 225 1 3120 115 40 14 chr1 210293412 210293883 -71899781 + L1PB4 LINE L1 5658 6144 -12 180 309 18 91 chr1 210294180 210294290 -71899374 + MIR3 SINE MIR 2 103 -105 261 277 64 64 chr1 210294388 210294529 -71899135 + MIR3 SINE MIR 21 161 -47 682 277 78 5 chr1 210294552 210294758 -71898906 + MIR SINE MIR 14 234 -28 336 373 60 27 chr1 210294845 210295030 -71898634 - L2 LINE L2 -9 3263 3073 251 306 126 9 chr1 210295173 210295284 -71898380 + L2 LINE L2 3147 3270 -2 2381 84 0 0 chr1 210296128 210296438 -71897226 - AluSg SINE Alu 0 310 1 413 264 23 46 chr1 210296498 210296665 -71896999 - MIR3 SINE MIR -59 149 3 180 194 167 0 chr1 210296799 210296835 -71896829 + MIR3 SINE MIR 116 157 -51 228 361 9 9 chr1 210297146 210297254 -71896410 - L2 LINE L2 -218 3054 2947 1941 179 30 35 chr1 210298127 210298686 -71894978 + MLT2A1 LTR ERVL 1 554 0 409 298 127 6 chr1 210299226 210299407 -71894257 - MIR SINE MIR -9 253 51 867 303 114 54 chr1 210301707 210302259 -71891405 - L1ME4a LINE L1 -2 6119 5535 2222 149 5 14 chr1 210302475 210302844 -71890820 + MER47A DNA MER2_type 1 366 0 220 254 341 24 chr1 210304201 210304327 -71889337 - MIR SINE MIR -10 252 87 411 253 132 23 chr1 210304371 210304545 -71889119 + MIR3 SINE MIR 3 195 -13 204 295 31 109 chr1 210305088 210305112 -71888552 - L2 LINE L2 -2 3311 3287 2197 101 0 0 chr1 210305112 210305410 -71888254 + AluSx SINE Alu 1 298 -14 204 295 31 109 chr1 210305410 210305578 -71888086 - L2 LINE L2 -26 3287 3134 739 198 35 23 chr1 210305741 210305913 -71887751 - MIR SINE MIR 0 262 89 * 1334 263 58 33 chr1 210305903 210305959 -71887705 - L2 LINE L2 -50 3263 3210 2106 117 0 0 chr1 210305959 210306249 -71887415 - AluSg SINE Alu -5 305 16 2100 115 0 0 chr1 210306249 210306537 -71887127 - AluSx SINE Alu -24 288 1 1334 263 58 33 chr1 210306537 210307159 -71886505 - L2 LINE L2 -102 3211 2566 1187 270 55 44 chr1 210307260 210307342 -71886322 - MER90 LTR ERV1 -27 548 468 2117 107 0 7 chr1 210307342 210307641 -71886023 - AluSg SINE Alu -13 297 1 1554 173 0 53 chr1 210307641 210307958 -71885706 - AluJo SINE Alu -11 301 1 1187 270 55 44 chr1 210307958 210308348 -71885316 - MER90 LTR ERV1 -106 469 70 440 141 0 0 chr1 210308778 210308849 -71884815 + Alu SINE Alu 242 312 0 1305 40 11 6 chr1 210308870 210309047 -71884617 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 764 244 6 17 chr1 210309129 210309301 -71884363 + MIR SINE MIR 69 238 -24 554 332 58 8 chr1 210309301 210309542 -71884122 - MIR SINE MIR -6 256 4 2271 75 0 3 chr1 210309953 210310247 -71883417 - AluSq SINE Alu -20 293 1 228 254 60 30 chr1 210310803 210310870 -71882794 - L2 LINE L2 -27 3286 3218 * 338 227 338 15 chr1 210310853 210311051 -71882613 - MIR SINE MIR 0 262 1 299 320 92 68 chr1 210311204 210311675 -71881989 - L2 LINE L2 -193 3079 2594 359 254 109 43 chr1 210311913 210312051 -71881613 + MIR SINE MIR 48 194 -68 1412 165 22 15 chr1 210312408 210312681 -71880983 - AluJb SINE Alu -34 278 4 203 171 0 24 chr1 210313555 210313596 -71880068 + (CAA)n Simple_repeat Simple_repeat 3 42 0 279 0 0 0 chr1 210314839 210314870 -71878794 + (T)n Simple_repeat Simple_repeat 1 31 0 929 256 152 39 chr1 210315385 210316123 -71877541 + L2 LINE L2 2494 3305 -8 213 121 0 0 chr1 210316982 210317015 -71876649 + (TTA)n Simple_repeat Simple_repeat 2 34 0 203 189 0 0 chr1 210317174 210317211 -71876453 + A-rich Low_complexity Low_complexity 1 37 0 350 245 41 31 chr1 210319570 210319668 -71873996 - MIR SINE MIR -98 164 66 234 100 0 0 chr1 210319690 210319720 -71873944 - L2 LINE L2 -20 3293 3264 239 309 0 0 chr1 210319750 210319805 -71873859 - MIR SINE MIR -155 107 53 347 0 23 0 chr1 210319832 210319875 -71873789 + (CA)n Simple_repeat Simple_repeat 1 44 0 253 298 0 0 chr1 210320035 210320092 -71873572 + MIR SINE MIR 16 72 -190 434 250 83 0 chr1 210320161 210320257 -71873407 + MIR SINE MIR 94 197 -65 825 320 71 6 chr1 210320261 210320586 -71873078 - LTR16A LTR ERVL -6 444 99 263 228 0 35 chr1 210320652 210320709 -71872955 + MIR SINE MIR 198 252 -10 1829 89 0 4 chr1 210320955 210321203 -71872461 + AluSq SINE Alu 2 248 -65 796 220 86 14 chr1 210322752 210322961 -71870703 - L1ME2 LINE L1 -9 6155 5932 374 295 92 78 chr1 210322964 210323235 -71870429 + L2 LINE L2 2995 3269 -3 977 224 4 61 chr1 210323255 210323518 -71870146 - MIR SINE MIR 0 262 15 354 23 0 0 chr1 210325029 210325072 -71868592 + (TG)n Simple_repeat Simple_repeat 2 44 0 264 242 16 16 chr1 210325277 210325339 -71868325 + L2 LINE L2 3248 3309 -4 257 276 35 0 chr1 210325913 210326000 -71867664 - MIR SINE MIR -125 137 48 415 200 47 0 chr1 210326979 210327064 -71866600 - MIR SINE MIR -70 192 104 2013 105 13 13 chr1 210327403 210327709 -71865955 - MER39B LTR ERV1 0 630 339 1761 151 11 46 chr1 210327710 210328068 -71865596 - MER4A LTR ERV1 0 664 261 1613 123 104 25 chr1 210328132 210328412 -71865252 - MER39B LTR ERV1 -312 341 48 192 97 0 0 chr1 210328412 210328443 -71865221 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 219 211 19 19 chr1 210328665 210328717 -71864947 + L2 LINE L2 3258 3309 -4 369 244 58 3 chr1 210328885 210329026 -71864638 + MIR SINE MIR 11 160 -58 1906 78 3 41 chr1 210329055 210329374 -71864290 + AluSx SINE Alu 1 308 0 213 195 0 0 chr1 210329510 210329551 -71864113 + G-rich Low_complexity Low_complexity 2 42 0 309 224 109 5 chr1 210330350 210330487 -71863177 - MIR SINE MIR -30 232 12 219 247 78 78 chr1 210330493 210330647 -71863017 - L2 LINE L2 -41 3272 3119 308 288 86 67 chr1 210330710 210330977 -71862687 - LTR67 LTR ERVL -31 526 255 396 276 32 16 chr1 210331368 210331491 -71862173 - MIR SINE MIR -91 171 47 1661 236 101 145 chr1 210333986 210334519 -71859145 + HAL1 LINE L1 651 1206 -1301 2303 84 10 3 chr1 210334519 210334830 -71858834 + AluSp SINE Alu 1 313 0 1661 236 101 145 chr1 210334830 210335199 -71858465 + HAL1 LINE L1 1206 1590 -917 1056 137 0 0 chr1 210335199 210335352 -71858312 - AluSg/x SINE Alu -22 288 136 1661 236 101 145 chr1 210335352 210336148 -71857516 + HAL1 LINE L1 1590 2421 -86 26 50 0 0 chr1 210336219 210336259 -71857405 + AT_rich Low_complexity Low_complexity 1 40 0 641 196 229 0 chr1 210336544 210336723 -71856941 + MIR SINE MIR 19 238 -24 192 267 109 20 chr1 210336729 210336830 -71856834 - L2 LINE L2 -5 3267 3158 2448 55 0 10 chr1 210337190 210337500 -71856164 - AluSg SINE Alu -3 307 1 210 269 75 43 chr1 210338545 210338638 -71855026 + L2 LINE L2 3173 3268 -4 228 329 13 0 chr1 210339604 210339683 -71853981 + MIR SINE MIR 122 201 -61 961 211 35 62 chr1 210339905 210340194 -71853470 - L1ME1 LINE L1 -5 6161 5881 335 278 9 53 chr1 210340239 210340404 -71853260 + MIR SINE MIR 25 182 -58 208 121 0 0 chr1 210340501 210340534 -71853130 + (TG)n Simple_repeat Simple_repeat 2 34 0 2311 139 40 10 chr1 210341164 210341560 -71852104 - L1MC1 LINE L1 -1 6332 5925 2360 216 93 35 chr1 210341569 210342281 -71851383 - L1ME2 LINE L1 -3 6161 5409 919 226 42 43 chr1 210342753 210343046 -71850618 - L1ME2 LINE L1 -732 5430 5138 2153 114 10 0 chr1 210343046 210343354 -71850310 - AluSx SINE Alu -1 311 1 919 226 42 43 chr1 210343354 210343466 -71850198 - L1ME2 LINE L1 -1024 5138 5027 342 331 31 24 chr1 210343693 210343820 -71849844 + L2 LINE L2 3145 3272 0 206 246 35 35 chr1 210344787 210344844 -71848820 + L2 LINE L2 3216 3272 0 194 340 0 0 chr1 210345401 210345451 -71848213 - L2 LINE L2 -8 3264 3215 300 315 65 0 chr1 210345496 210345604 -71848060 - MIR SINE MIR -120 142 28 767 265 22 29 chr1 210346538 210346810 -71846854 - L1ME1 LINE L1 -281 5889 5620 448 239 46 18 chr1 210346810 210346919 -71846745 - MIR SINE MIR -120 142 31 2737 128 50 35 chr1 210347026 210347509 -71846155 + LTR2B LTR ERV1 1 490 0 27 62 0 0 chr1 210347587 210347635 -71846029 + AT_rich Low_complexity Low_complexity 1 48 0 778 261 22 29 chr1 210347635 210347907 -71845757 - L1ME3A LINE L1 -281 5889 5620 505 216 0 10 chr1 210347907 210348004 -71845660 - MIR SINE MIR -120 142 47 1190 80 0 3 chr1 210350187 210350412 -71843252 + AluSg SINE Alu 2 286 -26 2156 105 0 3 chr1 210350974 210351280 -71842384 + AluSc SINE Alu 1 305 -4 524 285 40 41 chr1 210351343 210351580 -71842084 - MIR SINE MIR -13 249 14 674 210 27 75 chr1 210352181 210352346 -71841318 + MIR SINE MIR 1 158 -104 1899 162 48 16 chr1 210352346 210352723 -71840941 + MLT1B LTR MaLR 1 389 -1 674 210 27 75 chr1 210352723 210352743 -71840921 + MIR SINE MIR 158 177 -85 1333 177 39 25 chr1 210352747 210353030 -71840634 + AluJo SINE Alu 1 287 -25 2426 68 3 0 chr1 210353304 210353612 -71840052 + AluY SINE Alu 1 309 -2 615 295 109 0 chr1 210353907 210354100 -71839564 - MIR SINE MIR -21 241 28 1631 197 22 19 chr1 210354331 210354691 -71838973 + MLT1A1 LTR MaLR 5 365 0 22 0 0 0 chr1 210357985 210358007 -71835657 + GC_rich Low_complexity Low_complexity 1 22 0 906 187 12 12 chr1 210358032 210358203 -71835461 - MER5B DNA MER1_type 0 178 8 590 279 55 24 chr1 210358221 210358386 -71835278 + MER5A DNA MER1_type 20 189 0 209 204 0 0 chr1 210358560 210358604 -71835060 + (CCTTG)n Simple_repeat Simple_repeat 3 46 0 997 279 35 43 chr1 210360599 210360994 -71832670 - LTR16A LTR ERVL -40 410 19 343 275 12 0 chr1 210361378 210361458 -71832206 - ERVL LTR ERVL -700 5064 4984 438 189 0 0 chr1 210361518 210361592 -71832072 + MER3 DNA MER1_type 41 114 -95 774 121 8 0 chr1 210361595 210361719 -71831945 + MER3 DNA MER1_type 2500 2624 0 3280 318 83 50 chr1 210361720 210363119 -71830545 - ERVL LTR ERVL -870 4894 3392 2531 153 26 2 chr1 210363119 210363536 -71830128 - MSTA LTR MaLR 0 428 2 3280 318 83 50 chr1 210363536 210364371 -71829293 - ERVL LTR ERVL -2372 3392 2586 269 26 26 0 chr1 210364372 210364410 -71829254 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 291 93 0 0 chr1 210364411 210364454 -71829210 + (TG)n Simple_repeat Simple_repeat 2 44 0 188 158 18 0 chr1 210364468 210364525 -71829139 + (TA)n Simple_repeat Simple_repeat 2 59 0 766 219 6 6 chr1 210364647 210364825 -71828839 - L1MC4 LINE L1 -145 7897 7720 709 215 93 5 chr1 210364838 210365043 -71828621 - L1MC4 LINE L1 -442 7600 7378 604 184 29 0 chr1 210365053 210365156 -71828508 - FLAM_C SINE Alu -19 124 19 585 222 39 13 chr1 210365157 210365310 -71828354 - L1MC4a LINE L1 -505 7303 7147 * 1143 261 95 6 chr1 210365295 210365652 -71828012 - L1MC4 LINE L1 -958 7084 6696 * 4334 194 22 51 chr1 210365649 210365933 -71827731 - L1P LINE L1 -3167 2979 2688 2180 116 0 0 chr1 210365933 210366244 -71827420 - AluSq SINE Alu -2 311 1 4334 194 22 51 chr1 210366244 210367055 -71826609 - L1P LINE L1 -3458 2688 1916 6968 244 56 20 chr1 210367055 210368459 -71825205 - L1M4 LINE L1 -883 5761 4409 2128 119 3 0 chr1 210368459 210368770 -71824894 - AluSx SINE Alu 0 312 1 6968 244 56 20 chr1 210368770 210369450 -71824214 - L1M4 LINE L1 -2235 4409 3586 1634 179 17 0 chr1 210369450 210369746 -71823918 + AluJo SINE Alu 1 301 -11 6968 244 56 20 chr1 210369746 210369915 -71823749 - L1M4 LINE L1 -3058 3586 3425 334 261 108 0 chr1 210369943 210370054 -71823610 - L1M4 LINE L1 -3115 3529 3407 6044 68 15 100 chr1 210370055 210371057 -71822607 + L1MA2 LINE L1 5388 6304 0 3161 252 50 69 chr1 210371073 210371126 -71822538 - L1M4 LINE L1 -5199 1343 1290 2355 88 0 3 chr1 210371126 210371433 -71822231 - AluSx SINE Alu -6 306 1 3161 252 50 69 chr1 210371433 210372747 -71820917 - L1M4 LINE L1 -5252 1290 3 589 300 63 41 chr1 210372759 210373219 -71820445 - L1MDa LINE L1 -1610 4605 4136 541 281 27 0 chr1 210373220 210373405 -71820259 - L1MDa LINE L1 -2648 3567 3378 279 258 42 62 chr1 210373708 210373912 -71819752 - L1MDa LINE L1 -3938 2277 2164 * 5322 159 20 63 chr1 210373903 210374130 -71819534 - L1MA4 LINE L1 -1 6481 6246 2422 100 3 0 chr1 210374130 210374439 -71819225 - AluSp SINE Alu -3 310 1 5322 159 20 63 chr1 210374439 210374852 -71818812 - L1MA4 LINE L1 -236 6246 5817 1785 169 24 3 chr1 210374852 210375147 -71818517 - AluJb SINE Alu -11 301 1 5322 159 20 63 chr1 210375147 210375408 -71818256 - L1MA4 LINE L1 -665 5817 5546 194 61 0 30 chr1 210375408 210375441 -71818223 + (TGG)n Simple_repeat Simple_repeat 1 32 0 2457 81 3 3 chr1 210375441 210375749 -71817915 - AluSq SINE Alu -5 308 1 5322 159 20 63 chr1 210375749 210375830 -71817834 - L1MA4 LINE L1 -935 5547 5464 6265 73 46 33 chr1 210375830 210377582 -71816082 - SVA Other Other -518 1386 57 417 20 0 0 chr1 210377582 210377632 -71816032 + (GGGAGA)n Simple_repeat Simple_repeat 1 50 0 5322 159 20 63 chr1 210377632 210378092 -71815572 - L1MA4 LINE L1 -1017 5465 4987 2108 105 7 26 chr1 210378092 210378396 -71815268 - AluSp SINE Alu -15 298 1 5322 159 20 63 chr1 210378396 210379043 -71814621 - L1MA4 LINE L1 -1495 4987 4444 1257 214 18 0 chr1 210379043 210379319 -71814345 - L1MA4 LINE L1 -3607 2721 2441 4251 186 88 7 chr1 210379319 210380083 -71813581 - LTR1B LTR ERV1 0 826 1 8358 128 34 27 chr1 210380083 210380822 -71812842 - HUERS-P2 LTR ERV1 0 3088 2335 2075 136 10 0 chr1 210380822 210381117 -71812547 - AluSx SINE Alu -14 298 1 8358 128 34 27 chr1 210381117 210381670 -71811994 - HUERS-P2 LTR ERV1 -753 2335 1787 7421 181 53 26 chr1 210381675 210383099 -71810565 - HUERS-P2 LTR ERV1 -1528 1560 98 906 169 6 36 chr1 210383099 210383265 -71810399 - LTR1B LTR ERV1 -665 161 1 5959 226 27 25 chr1 210383269 210384930 -71808734 - L1MA4 LINE L1 -3892 2436 772 1371 166 28 0 chr1 210384960 210385177 -71808487 - AluJb SINE Alu -8 304 82 3772 189 26 9 chr1 210385178 210385856 -71807808 - L1MA4 LINE L1 -4628 700 11 612 279 99 47 chr1 210386207 210386907 -71806757 - L1MDa LINE L1 -4720 1676 941 334 277 62 34 chr1 210387428 210387605 -71806059 - L1MDa LINE L1 -5893 312 131 186 43 0 0 chr1 210387605 210387628 -71806036 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1764 193 0 16 chr1 210387982 210388293 -71805371 - AluJo SINE Alu -4 308 3 539 315 128 13 chr1 210388318 210388553 -71805111 - L2 LINE L2 -2806 508 247 241 268 0 24 chr1 210389320 210389402 -71804262 - L1ME LINE L1 -366 5755 5676 207 211 115 0 chr1 210389424 210389476 -71804188 + L2 LINE L2 2608 2665 -649 1686 139 3 36 chr1 210389946 210390247 -71803417 - AluJb SINE Alu -3 309 19 237 302 104 21 chr1 210390625 210390721 -71802943 - L2 LINE L2 -2 3311 3208 474 269 71 15 chr1 210391383 210391580 -71802084 + L1M4 LINE L1 16 223 -6319 1546 222 51 61 chr1 210391944 210392472 -71801192 + L1M4 LINE L1 875 1397 -5145 488 261 44 10 chr1 210392472 210392675 -71800989 + L1M4 LINE L1 1665 1874 -4772 * 2551 250 54 26 chr1 210392643 210393310 -71800354 + L1M4 LINE L1 3604 4304 -2340 1472 174 8 23 chr1 210393310 210393574 -71800090 + AluJb SINE Alu 1 260 -52 2551 250 54 26 chr1 210393574 210393818 -71799846 + L1M4 LINE L1 4304 4540 -2104 188 296 61 80 chr1 210393832 210394143 -71799521 - L2 LINE L2 -940 2374 2070 2343 104 73 22 chr1 210394894 210395251 -71798413 - THE1C LTR MaLR 0 375 1 2881 114 23 9 chr1 210395252 210395681 -71797983 - THE1C-int LTR MaLR -1 1579 1145 2147 135 67 14 chr1 210395695 210396051 -71797613 - THE1C LTR MaLR 0 375 1 268 309 252 0 chr1 210396129 210396252 -71797412 - MIR SINE MIR -71 191 38 269 255 75 0 chr1 210396370 210396464 -71797200 - L1MDa LINE L1 -6259 137 37 330 26 0 0 chr1 210397451 210397490 -71796174 + (CA)n Simple_repeat Simple_repeat 2 40 0 221 224 52 0 chr1 210397890 210397948 -71795716 - MIR SINE MIR -97 165 105 445 327 139 0 chr1 210398710 210398918 -71794746 - MIR SINE MIR -6 256 20 213 359 0 0 chr1 210398957 210399021 -71794643 + MIR3 SINE MIR 124 187 -21 207 146 0 0 chr1 210399104 210399145 -71794519 + (TG)n Simple_repeat Simple_repeat 1 41 0 475 292 64 12 chr1 210399336 210399507 -71794157 + MIR SINE MIR 20 199 -63 334 242 124 53 chr1 210400017 210400340 -71793324 - L1MC4a LINE L1 -3 6118 5769 334 229 52 10 chr1 210400339 210400435 -71793229 - L1MC4a LINE L1 -1926 5882 5783 403 278 116 6 chr1 210400458 210400631 -71793033 - L2 LINE L2 0 3272 3081 * 577 248 109 0 chr1 210400603 210400740 -71792924 + MIR SINE MIR 25 176 -86 202 357 101 13 chr1 210400855 210401093 -71792571 - L2 LINE L2 -248 3065 2807 312 260 152 28 chr1 210401099 210401511 -71792153 - L1MC4a LINE L1 -429 5755 5279 2245 115 3 0 chr1 210401578 210401873 -71791791 + AluSx SINE Alu 1 296 -16 199 258 82 107 chr1 210402229 210402388 -71791276 + L2 LINE L2 817 971 -2343 808 305 133 15 chr1 210402418 210402808 -71790856 + L2 LINE L2 1402 1837 -1477 3811 199 37 53 chr1 210402825 210403617 -71790047 - L1ME1 LINE L1 -6 6229 5446 2430 79 76 23 chr1 210403617 210403959 -71789705 - THE1B LTR MaLR -2 362 3 3811 199 37 53 chr1 210403959 210404156 -71789508 - L1ME1 LINE L1 -789 5446 5247 1680 149 63 45 chr1 210404156 210404491 -71789173 + MER46B DNA MER2_type 19 234 -2 2961 229 47 14 chr1 210404519 210405258 -71788406 - L1ME1 LINE L1 -5596 800 37 2129 122 3 0 chr1 210405279 210405574 -71788090 + AluSx SINE Alu 1 296 -16 188 397 0 0 chr1 210405601 210405674 -71787990 - L2 LINE L2 -611 2703 2631 680 250 11 60 chr1 210405674 210405858 -71787806 + MER96 DNA MER1_type? 1 175 0 414 322 92 0 chr1 210405858 210406032 -71787632 - L2 LINE L2 -676 2638 2449 323 310 43 17 chr1 210406032 210406209 -71787455 - MER63 DNA MER1_type -1 1061 27 275 325 25 0 chr1 210406356 210406436 -71787228 + L2 LINE L2 3169 3250 -22 16165 175 33 12 chr1 210408145 210413320 -71780344 - L1MA4 LINE L1 -4 7715 2428 633 200 107 7 chr1 210413294 210413444 -71780220 - L1MA4 LINE L1 -5163 1402 1238 * 2119 113 14 0 chr1 210413584 210413877 -71779787 - AluSc SINE Alu -12 297 1 287 396 52 0 chr1 210414262 210414454 -71779210 - L2 LINE L2 -9 3304 3103 372 301 19 83 chr1 210414656 210414766 -71778898 + L2 LINE L2 2644 2735 -579 2363 82 0 0 chr1 210414766 210415057 -71778607 + AluY SINE Alu 1 291 -20 372 301 19 83 chr1 210415057 210415162 -71778502 + L2 LINE L2 2735 2845 -469 231 226 22 109 chr1 210416461 210416598 -71777066 - Charlie8 DNA MER1_type -2253 164 40 652 236 26 40 chr1 210417286 210417464 -71776200 - MIR SINE MIR -56 206 34 293 293 30 6 chr1 210418780 210418947 -71774717 + (TA)n Simple_repeat Simple_repeat 1 171 0 2059 166 19 0 chr1 210418947 210419272 -71774392 + MER7A DNA MER2_type 1 329 -17 2294 82 0 3 chr1 210419304 210419596 -71774068 - AluY SINE Alu -16 295 5 195 259 17 0 chr1 210419744 210419802 -71773862 + MIR SINE MIR 77 135 -73 1740 209 71 34 chr1 210419804 210420089 -71773575 - MSTD LTR MaLR 0 396 92 2026 139 3 20 chr1 210420089 210420390 -71773274 - AluSp SINE Alu -17 296 1 1740 209 71 34 chr1 210420390 210420486 -71773178 - MSTD LTR MaLR -304 92 1 566 249 83 6 chr1 210420769 210420938 -71772726 - MIR3 SINE MIR -21 187 6 2517 148 8 5 chr1 210422173 210422565 -71771099 - L1PB4 LINE L1 -1 6155 5763 199 250 0 0 chr1 210423462 210423514 -71770150 + MIR SINE MIR 37 88 -120 419 294 18 30 chr1 210423656 210423841 -71769823 - MIR SINE MIR -57 151 23 253 238 155 107 chr1 210425058 210425226 -71768438 - MER102b DNA MER1_type -5 336 161 339 85 0 0 chr1 210425238 210425285 -71768379 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2478 206 86 34 chr1 210425549 210426142 -71767522 - MLT1E2 LTR MaLR 0 626 3 245 276 7 138 chr1 210427086 210427238 -71766426 + L2 LINE L2 3139 3270 -2 * 271 282 78 39 chr1 210427215 210427318 -71766346 - L2 LINE L2 -13 3300 3194 456 269 66 22 chr1 210428028 210428210 -71765454 + MIR SINE MIR 41 230 -32 806 142 0 0 chr1 210428393 210428544 -71765120 + AluJb SINE Alu 162 312 0 1031 162 11 31 chr1 210429013 210429204 -71764460 + MER53 DNA DNA 1 187 -2 186 103 0 0 chr1 210429264 210429293 -71764371 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 311 284 28 14 chr1 210429751 210429892 -71763772 - LTR33 LTR ERVL -10 511 369 709 191 62 12 chr1 210430031 210430193 -71763471 + Ricksha DNA DNA 1 170 -1876 * 6478 143 65 14 chr1 210430089 210431262 -71762402 - Ricksha DNA DNA -13 3233 2002 438 262 10 0 chr1 210431262 210431365 -71762299 - L1MCa LINE L1 -6318 108 5 337 208 313 0 chr1 210431365 210431461 -71762203 - MER5B DNA MER1_type -52 126 1 959 167 0 12 chr1 210432109 210432271 -71761393 + FRAM SINE Alu 1 157 -19 4401 194 26 30 chr1 210432286 210433970 -71759694 - L1MB8 LINE L1 -3 6175 4500 363 306 87 18 chr1 210434249 210434468 -71759196 + L1ME LINE L1 5067 5300 -846 578 287 72 29 chr1 210434667 210434946 -71758718 + L1ME LINE L1 5496 5786 -335 973 69 0 0 chr1 210435119 210435235 -71758429 + AluSg/x SINE Alu 174 289 -23 426 233 0 0 chr1 210436191 210436294 -71757370 - FRAM SINE Alu 0 176 74 228 329 6 46 chr1 210436364 210436600 -71757064 + CT-rich Low_complexity Low_complexity 1 226 0 738 239 5 35 chr1 210436668 210436865 -71756799 + MLT1J LTR MaLR 3 193 -318 2053 283 75 21 chr1 210436888 210437921 -71755743 + L2 LINE L2 2149 3240 -73 232 220 0 0 chr1 210437971 210438021 -71755643 + MLT1J LTR MaLR 417 466 -45 46 19 0 0 chr1 210438255 210438308 -71755356 + AT_rich Low_complexity Low_complexity 1 53 0 3940 98 2 6 chr1 210438412 210438925 -71754739 + MER9 LTR ERVK 1 511 0 1724 175 0 29 chr1 210438930 210439239 -71754425 - AluSx SINE Alu -12 300 1 2456 76 0 3 chr1 210439350 210439652 -71754012 + AluY SINE Alu 1 301 -10 1038 206 36 24 chr1 210439741 210439988 -71753676 - MLT1A2 LTR MaLR -124 250 1 231 250 0 0 chr1 210440013 210440057 -71753607 - L2 LINE L2 -23 3249 3206 189 259 0 56 chr1 210440484 210440538 -71753126 + L2 LINE L2 3209 3259 -13 430 308 53 6 chr1 210441108 210441277 -71752387 + MIR SINE MIR 20 196 -66 436 293 132 21 chr1 210441357 210441599 -71752065 - L2 LINE L2 0 3272 3004 1211 164 33 9 chr1 210441719 210441933 -71751731 - MER20 DNA MER1_type 0 219 1 229 216 0 20 chr1 210441991 210442042 -71751622 + L2 LINE L2 3262 3311 -2 396 313 27 27 chr1 210442158 210442305 -71751359 + MIR SINE MIR 68 214 -48 252 350 83 8 chr1 210442875 210442995 -71750669 + MIR SINE MIR 22 150 -112 484 219 32 16 chr1 210443001 210443124 -71750540 + MER46C DNA MER2_type 6 130 -208 1215 121 20 30 chr1 210443772 210443971 -71749693 + AluSx SINE Alu 1 197 -115 226 327 0 0 chr1 210543973 210544025 -71649639 - MER5A DNA MER1_type -120 69 18 1019 199 14 57 chr1 210545196 210545432 -71648232 - L1P1 LINE L1 -528 5627 5437 2360 94 3 3 chr1 210545432 210545740 -71647924 - AluSq SINE Alu -5 308 1 1019 199 14 57 chr1 210545740 210545821 -71647843 - L1P1 LINE L1 -718 5437 5354 3376 56 0 17 chr1 210545821 210546231 -71647433 - SVA Other Other 0 1386 984 4510 67 15 129 chr1 210546331 210547108 -71646556 + L1MA2 LINE L1 5616 6304 0 2346 83 0 3 chr1 210547174 210547464 -71646200 - AluSx SINE Alu -2 310 22 395 298 88 112 chr1 210547569 210548421 -71645243 + L2 LINE L2 2140 2971 -343 253 333 114 0 chr1 210548590 210548722 -71644942 + L2 LINE L2 3122 3268 -4 1868 149 11 0 chr1 210548749 210549024 -71644640 - AluSx SINE Alu -11 301 24 3028 127 21 10 chr1 210549141 210549655 -71644009 - L1M3f LINE L1 -4065 1263 744 1371 166 28 0 chr1 210549656 210549873 -71643791 - AluJb SINE Alu -8 304 82 3772 189 26 9 chr1 210549874 210550552 -71643112 - L1M3f LINE L1 -4628 700 11 472 348 129 52 chr1 210550791 210551611 -71642053 - L1MEc LINE L1 -4573 1823 941 334 277 62 34 chr1 210552132 210552309 -71641355 - L1MEc LINE L1 -5893 312 131 186 43 0 0 chr1 210552309 210552332 -71641332 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 22 35 0 0 chr1 210552881 210552910 -71640754 + AT_rich Low_complexity Low_complexity 1 29 0 1511 160 6 134 chr1 210552923 210553267 -71640397 - AluSx SINE Alu -2 300 1 2303 111 3 0 chr1 210553280 210553587 -71640077 - AluSp SINE Alu -5 308 1 26 64 0 0 chr1 210553645 210553692 -71639972 + AT_rich Low_complexity Low_complexity 1 47 0 583 314 102 58 chr1 210553960 210554393 -71639271 + L2 LINE L2 2821 3272 0 384 155 14 0 chr1 210554633 210554704 -71638960 + L1MA10 LINE L1 6261 6332 -2 228 262 52 17 chr1 210554715 210554887 -71638777 + (TA)n Simple_repeat Simple_repeat 2 179 0 620 128 0 0 chr1 210554899 210554993 -71638671 - L1PA13 LINE L1 0 6163 6070 6127 144 46 165 chr1 210554993 210556712 -71636952 - L1M2a LINE L1 -5651 1517 3 211 204 61 0 chr1 210556720 210556769 -71636895 + MIR SINE MIR 118 169 -93 583 149 0 0 chr1 210557125 210557212 -71636452 + AluJ/FRAM SINE Alu 217 303 -9 2269 82 3 3 chr1 210558017 210558309 -71635355 + AluSg SINE Alu 1 292 -18 200 270 258 0 chr1 210558434 210558523 -71635141 + MIR SINE MIR 77 188 -74 1625 157 18 18 chr1 210558775 210559080 -71634584 + AluJb SINE Alu 1 305 0 374 176 15 0 chr1 210560895 210560963 -71632701 - MLT1A1 LTR MaLR 0 365 297 980 144 0 107 chr1 210560963 210561150 -71632514 + AluJo SINE Alu 1 167 -145 2257 120 0 0 chr1 210561257 210561558 -71632106 - AluSx SINE Alu -11 301 1 695 311 241 22 chr1 210561953 210562666 -71630998 + L3 LINE CR1 696 1564 -13 246 342 107 67 chr1 210563084 210563388 -71630276 + L2 LINE L2 2821 3146 -126 339 25 0 0 chr1 210563388 210563428 -71630236 + (TG)n Simple_repeat Simple_repeat 1 40 0 246 342 107 67 chr1 210563428 210563524 -71630140 + L2 LINE L2 3146 3237 -35 309 331 0 53 chr1 210563769 210563902 -71629762 - L2 LINE L2 -8 3264 3139 2288 112 0 0 chr1 210564101 210564413 -71629251 + AluSx SINE Alu 1 312 0 2115 111 0 0 chr1 210564767 210565047 -71628617 - AluSq SINE Alu -33 280 1 3654 204 27 20 chr1 210565049 210565858 -71627806 - L1P LINE L1 -3416 2730 1916 * 6493 254 60 24 chr1 210565857 210567262 -71626402 - L1 LINE L1 -882 5264 3912 2032 145 3 6 chr1 210567262 210567573 -71626091 - AluSx SINE Alu -2 310 1 6493 254 60 24 chr1 210567573 210568253 -71625411 - L1 LINE L1 -2234 3912 3089 1734 179 17 0 chr1 210568253 210568549 -71625115 + AluJo SINE Alu 1 301 -11 6493 254 60 24 chr1 210568549 210568707 -71624957 - L1 LINE L1 -3057 3089 2938 1948 5 0 0 chr1 210569518 210569724 -71623940 + AluYa5 SINE Alu 99 304 -7 581 222 217 5 chr1 210570229 210570427 -71623237 - MIR SINE MIR 0 262 23 579 236 107 52 chr1 210570649 210570882 -71622782 + MIR SINE MIR 17 262 0 521 273 66 16 chr1 210571003 210571186 -71622478 + MER112 DNA MER1_type 65 256 -4 321 284 11 0 chr1 210571213 210571301 -71622363 + MIR SINE MIR 62 150 -112 1509 175 102 0 chr1 210571891 210572165 -71621499 - AluJb SINE Alu -10 302 1 288 305 19 71 chr1 210572189 210572208 -71621456 - MIR SINE MIR -64 144 126 2165 102 3 0 chr1 210572208 210572492 -71621172 - AluSx SINE Alu -27 285 1 288 305 19 71 chr1 210572492 210572626 -71621038 - MIR SINE MIR -82 126 17 328 313 31 8 chr1 210572955 210573083 -71620581 + MARNA DNA Mariner 287 417 -169 656 170 0 9 chr1 210573204 210573316 -71620348 + AluJo SINE Alu 28 138 -174 237 299 41 0 chr1 210573332 210573429 -71620235 + MARNA DNA Mariner 479 579 -7 200 143 0 48 chr1 210573794 210573836 -71619828 + (GGAGAA)n Simple_repeat Simple_repeat 3 42 0 629 189 0 0 chr1 210574410 210574505 -71619159 + FRAM SINE Alu 59 153 -23 354 236 39 79 chr1 210575465 210575592 -71618072 - MER5A DNA MER1_type -25 164 43 1913 146 0 8 chr1 210575624 210575910 -71617754 + AluSx SINE Alu 1 284 -28 367 23 0 0 chr1 210575910 210575953 -71617711 + (CAAA)n Simple_repeat Simple_repeat 2 116 0 498 322 45 41 chr1 210576024 210576266 -71617398 - ERVL LTR ERVL -3788 1976 1734 546 213 16 24 chr1 210576266 210576393 -71617271 - L2 LINE L2 -1 3312 3187 340 339 25 8 chr1 210576416 210576537 -71617127 - ERVL LTR ERVL -4102 1662 1540 821 151 0 16 chr1 210576725 210576851 -71616813 + FLAM_C SINE Alu 1 124 -9 279 222 28 28 chr1 210576864 210577044 -71616620 + (TA)n Simple_repeat Simple_repeat 1 180 0 28 91 0 0 chr1 210577044 210577121 -71616543 + AT_rich Low_complexity Low_complexity 1 77 0 312 209 22 39 chr1 210577121 210577303 -71616361 + (TA)n Simple_repeat Simple_repeat 2 180 0 313 250 18 18 chr1 210577314 210577478 -71616186 + (TA)n Simple_repeat Simple_repeat 1 164 0 2739 81 98 5 chr1 210578239 210578649 -71615015 + LTR7 LTR ERV1 1 448 -2 2240 109 33 0 chr1 210579119 210579421 -71614243 - AluSx SINE Alu 0 312 1 324 278 53 45 chr1 210580759 210580892 -71612772 + MIR3 SINE MIR 54 187 -21 215 127 18 36 chr1 210580903 210580958 -71612706 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 886 188 52 7 chr1 210581024 210581199 -71612465 - AluJo SINE Alu 0 304 123 185 260 20 0 chr1 210581242 210581292 -71612372 - MIR SINE MIR -116 146 96 2262 112 0 0 chr1 210581304 210581590 -71612074 - AluSx SINE Alu -26 286 1 184 347 95 0 chr1 210581591 210581686 -71611978 - MIR SINE MIR -158 104 1 216 276 11 23 chr1 210581843 210581930 -71611734 + CT-rich Low_complexity Low_complexity 1 86 0 276 236 169 22 chr1 210582138 210582227 -71611437 + MER5A DNA MER1_type 64 165 -24 282 235 41 41 chr1 210582476 210582574 -71611090 + MER106B DNA MER1_type 961 1058 -1 1222 194 46 95 chr1 210583183 210583595 -71610069 - MSTD LTR MaLR -4 392 1 944 199 34 34 chr1 210583595 210583801 -71609863 + LTR8 LTR ERV1 3 208 -483 1413 118 5 19 chr1 210583810 210583986 -71609678 - AluSg/x SINE Alu -3 307 133 11655 38 5 34 chr1 210583986 210585450 -71608214 - SVA Other Other 0 1386 2 1413 118 5 19 chr1 210585450 210585485 -71608179 - AluSg/x SINE Alu -177 133 99 1862 163 0 10 chr1 210586671 210586977 -71606687 - AluJb SINE Alu -9 303 1 303 299 110 6 chr1 210587173 210587337 -71606327 + MER117 DNA MER1_type 7 187 -10 264 100 0 0 chr1 210588348 210588388 -71605276 + (TG)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr1 210588427 210588450 -71605214 + (TG)n Simple_repeat Simple_repeat 2 24 0 474 272 101 0 chr1 210588696 210588854 -71604810 + L2 LINE L2 2537 2710 -604 7668 168 43 16 chr1 210588868 210589517 -71604147 + L1M4c LINE L1 17 646 -5738 222 37 0 0 chr1 210589517 210589544 -71604120 + (TAA)n Simple_repeat Simple_repeat 1 27 0 7668 168 43 16 chr1 210589544 210590301 -71603363 + L1M4c LINE L1 646 1462 -4922 974 279 35 43 chr1 210590823 210591218 -71602446 - LTR16A LTR ERVL -40 410 19 344 275 12 0 chr1 210591602 210591682 -71601982 - ERVL LTR ERVL -700 5064 4984 430 189 0 0 chr1 210591742 210591816 -71601848 + MER3 DNA MER1_type 41 114 -95 789 121 8 0 chr1 210591819 210591943 -71601721 + MER3 DNA MER1_type 2500 2624 0 3268 314 86 52 chr1 210591944 210593343 -71600321 - ERVL LTR ERVL -870 4894 3392 2532 153 26 2 chr1 210593343 210593760 -71599904 - MSTA LTR MaLR 0 428 2 3268 314 86 52 chr1 210593760 210594595 -71599069 - ERVL LTR ERVL -2372 3392 2586 269 26 26 0 chr1 210594596 210594634 -71599030 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 291 93 0 0 chr1 210594635 210594678 -71598986 + (TG)n Simple_repeat Simple_repeat 2 44 0 188 158 18 0 chr1 210594692 210594749 -71598915 + (TA)n Simple_repeat Simple_repeat 2 59 0 771 219 6 6 chr1 210594871 210595049 -71598615 - L1MC4 LINE L1 -145 7897 7720 718 215 93 5 chr1 210595062 210595267 -71598397 - L1MC4 LINE L1 -442 7600 7378 603 184 29 0 chr1 210595277 210595380 -71598284 - FLAM_C SINE Alu -19 124 19 598 216 39 13 chr1 210595381 210595534 -71598130 - L1MC4a LINE L1 -505 7303 7147 * 1158 261 95 6 chr1 210595519 210595876 -71597788 - L1MC4 LINE L1 -958 7084 6696 711 190 7 0 chr1 210595873 210596010 -71597654 - L1P LINE L1 -3167 2979 2842 * 1981 97 7 29 chr1 210596110 210596388 -71597276 - AluSp SINE Alu -41 272 1 3313 161 47 5 chr1 210596391 210597035 -71596629 - L1 LINE L1 -1214 6351 5681 1239 214 18 0 chr1 210597035 210597311 -71596353 - L1M4 LINE L1 -3607 3958 3678 4017 186 88 7 chr1 210597311 210598075 -71595589 - LTR1B LTR ERV1 0 826 1 8377 128 34 27 chr1 210598075 210598814 -71594850 - HUERS-P2 LTR ERV1 0 3088 2335 2075 139 10 0 chr1 210598814 210599109 -71594555 - AluSx SINE Alu -14 298 1 8377 128 34 27 chr1 210599109 210599662 -71594002 - HUERS-P2 LTR ERV1 -753 2335 1787 7495 181 53 26 chr1 210599667 210601091 -71592573 - HUERS-P2 LTR ERV1 -1528 1560 98 918 169 6 36 chr1 210601091 210601257 -71592407 - LTR1B LTR ERV1 -665 161 1 2091 216 52 13 chr1 210601261 210601876 -71591788 - L1M4 LINE L1 -3892 3673 3035 203 171 0 24 chr1 210603070 210603111 -71590553 + (TTG)n Simple_repeat Simple_repeat 3 42 0 1514 165 22 15 chr1 210603985 210604258 -71589406 + AluJb SINE Alu 4 278 -34 303 244 114 46 chr1 210604622 210604753 -71588911 - MIR SINE MIR -75 187 48 255 261 6 139 chr1 210605297 210605462 -71588202 + L2 LINE L2 2937 3079 -193 254 200 406 0 chr1 210605648 210605813 -71587851 + MIR SINE MIR 31 262 0 206 271 21 0 chr1 210605821 210605869 -71587795 + L2 LINE L2 3204 3252 -20 2403 75 0 3 chr1 210606419 210606713 -71586951 + AluSq SINE Alu 1 293 -20 302 102 51 0 chr1 210607077 210607136 -71586528 + L1MA1 LINE L1 6241 6302 0 2896 260 50 72 chr1 210607152 210607207 -71586457 - L1M4 LINE L1 -5199 2264 2209 2318 108 0 3 chr1 210607207 210607513 -71586151 - AluSx SINE Alu -7 305 1 2896 260 50 72 chr1 210607513 210608828 -71584836 - L1M4 LINE L1 -5254 2209 924 543 300 63 41 chr1 210608840 210609300 -71584364 - L1MCa LINE L1 -1610 4816 4347 521 281 27 0 chr1 210609301 210609486 -71584178 - L1MCa LINE L1 -2648 3778 3589 254 247 34 11 chr1 210609885 210609974 -71583690 - L1MCa LINE L1 -3947 2479 2389 4834 158 7 52 chr1 210609984 210610211 -71583453 - L1MA4 LINE L1 -1 6299 6063 2434 100 3 0 chr1 210610211 210610520 -71583144 - AluSp SINE Alu -3 310 1 4834 158 7 52 chr1 210610520 210610933 -71582731 - L1MA4 LINE L1 -237 6063 5633 1802 169 24 3 chr1 210610933 210611228 -71582436 - AluJb SINE Alu -11 301 1 4834 158 7 52 chr1 210611228 210611489 -71582175 - L1MA4 LINE L1 -667 5633 5362 194 61 0 30 chr1 210611489 210611522 -71582142 + (TGG)n Simple_repeat Simple_repeat 1 32 0 2441 88 3 3 chr1 210611522 210611830 -71581834 - AluSq SINE Alu -5 308 1 4834 158 7 52 chr1 210611830 210611905 -71581759 - L1MA4 LINE L1 -936 5364 5364 6771 62 16 50 chr1 210611911 210612898 -71580766 - SVA Other Other 0 1386 433 557 104 8 37 chr1 210612911 210613045 -71580619 - SVA Other Other -592 794 665 5455 70 36 55 chr1 210613064 210613889 -71579775 - SVA Other Other -520 866 57 417 20 0 0 chr1 210613889 210613939 -71579725 + (GGGAGA)n Simple_repeat Simple_repeat 1 50 0 1027 224 31 0 chr1 210613940 210614195 -71579469 - L1MA4 LINE L1 -768 5378 5116 2334 59 0 14 chr1 210614297 210614585 -71579079 - AluSg SINE Alu -26 284 1 200 316 13 0 chr1 210616689 210616765 -71576899 + MIR SINE MIR 122 198 -64 952 208 35 62 chr1 210616990 210617279 -71576385 - L1ME1 LINE L1 -5 6161 5881 298 285 3 18 chr1 210617333 210617465 -71576199 + MIR SINE MIR 33 162 -59 208 121 0 0 chr1 210617586 210617619 -71576045 + (TG)n Simple_repeat Simple_repeat 2 34 0 2317 139 40 10 chr1 210618249 210618645 -71575019 - L1MC1 LINE L1 -1 6332 5925 1254 197 61 47 chr1 210618654 210619014 -71574650 - L1ME2 LINE L1 -3 6161 5797 1765 193 0 16 chr1 210619193 210619504 -71574160 - AluJo SINE Alu -4 308 3 491 307 12 6 chr1 210619601 210619764 -71573900 - L2 LINE L2 -2904 410 247 229 268 0 24 chr1 210620531 210620613 -71573051 - L1ME2 LINE L1 -366 5755 5676 191 211 115 0 chr1 210620635 210620687 -71572977 + L2 LINE L2 2608 2665 -649 1679 143 3 36 chr1 210621157 210621458 -71572206 - AluJb SINE Alu -3 309 19 210 302 104 21 chr1 210621836 210621932 -71571732 - L2 LINE L2 -2 3311 3208 460 269 71 15 chr1 210622594 210622791 -71570873 + L1M4 LINE L1 16 223 -6319 1510 222 51 61 chr1 210623155 210623683 -71569981 + L1M4 LINE L1 875 1397 -5145 471 261 44 10 chr1 210623683 210623886 -71569778 + L1M4 LINE L1 1665 1874 -4772 * 2421 254 54 25 chr1 210623854 210624521 -71569143 + L1M4 LINE L1 3604 4305 -2339 1491 174 8 23 chr1 210624521 210624785 -71568879 + AluJb SINE Alu 1 260 -52 2421 254 54 25 chr1 210624785 210625028 -71568636 + L1M4 LINE L1 4305 4540 -2104 21 0 0 0 chr1 210625176 210625197 -71568467 + AT_rich Low_complexity Low_complexity 1 21 0 2213 104 73 22 chr1 210626103 210626460 -71567204 - THE1C LTR MaLR 0 375 1 2890 114 23 9 chr1 210626461 210626890 -71566774 - THE1C-int LTR MaLR -1 1579 1145 2119 129 73 20 chr1 210626904 210627260 -71566404 - THE1C LTR MaLR 0 375 1 27 49 0 0 chr1 210627306 210627347 -71566317 + AT_rich Low_complexity Low_complexity 1 41 0 * 268 309 252 0 chr1 210627338 210627461 -71566203 - MIR SINE MIR -71 191 38 269 255 75 0 chr1 210627579 210627673 -71565991 - L1MEc LINE L1 -6259 137 37 4952 168 55 54 chr1 210627991 210628836 -71564828 + L1MB3 LINE L1 1534 2377 -4005 2452 82 0 3 chr1 210628836 210629141 -71564523 + AluY SINE Alu 1 304 -7 4952 168 55 54 chr1 210629141 210630257 -71563407 + L1MB3 LINE L1 2377 3496 -2886 2203 119 3 0 chr1 210630266 210630576 -71563088 + AluSx SINE Alu 1 311 -1 1190 213 60 22 chr1 210630634 210630902 -71562762 + AluJo SINE Alu 6 283 -29 8129 200 25 33 chr1 210630919 210631090 -71562574 + L1MB3 LINE L1 3527 3698 -2721 3125 39 6 0 chr1 210631090 210631449 -71562215 + L1PA5 LINE L1 5794 6154 0 8129 200 25 33 chr1 210631449 210632773 -71560891 + L1MB3 LINE L1 3698 5031 -1388 9397 33 8 5 chr1 210632773 210634601 -71559063 + L1PA4 LINE L1 4324 6154 -1 8129 200 25 33 chr1 210634601 210636017 -71557647 + L1MB3 LINE L1 5031 6416 -3 1399 251 58 50 chr1 210636026 210636622 -71557042 + L2 LINE L2 2702 3313 0 448 240 40 27 chr1 210637412 210637562 -71556102 - L2 LINE L2 0 3313 3162 2126 162 37 9 chr1 210639648 210639976 -71553688 + MER1B DNA MER1_type 1 337 0 244 286 12 12 chr1 210640301 210640385 -71553279 - LTR33 LTR ERVL 0 521 438 389 248 18 28 chr1 210640485 210640594 -71553070 - MIR SINE MIR -128 134 27 1100 258 103 71 chr1 210640872 210641527 -71552137 + L2 LINE L2 2431 3151 -162 1528 296 44 74 chr1 210641534 210642557 -71551107 + L1M3a LINE L1 2 993 -4962 901 196 0 0 chr1 210642611 210642769 -71550895 - FRAM SINE Alu -21 155 1 2820 224 108 72 chr1 210642769 210644233 -71549431 + L1M4c LINE L1 925 2441 -3943 7010 199 24 102 chr1 210644338 210644912 -71548752 + L1M4c LINE L1 2469 3087 -3295 928 209 0 0 chr1 210644912 210645070 -71548594 + FRAM SINE Alu 2 159 -17 7010 199 24 102 chr1 210645070 210645087 -71548577 + L1M4c LINE L1 3087 3104 -3278 2075 135 7 0 chr1 210645087 210645383 -71548281 - AluSx SINE Alu -14 298 1 7010 199 24 102 chr1 210645383 210646327 -71547337 + L1M4c LINE L1 3104 3910 -2472 1579 201 24 0 chr1 210646327 210646621 -71547043 + AluJo SINE Alu 1 301 -11 7010 199 24 102 chr1 210646621 210647250 -71546414 + L1M4c LINE L1 3910 4587 -1795 2856 153 38 2 chr1 210647291 210647767 -71545897 + L1MA9 LINE L1 5535 6027 -285 612 110 12 0 chr1 210647869 210647951 -71545713 - AluSg SINE Alu -226 84 2 37 23 0 0 chr1 210647951 210647995 -71545669 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 210648066 210648087 -71545577 + AT_rich Low_complexity Low_complexity 1 21 0 4233 168 20 6 chr1 210648293 210649271 -71544393 + L1PB4 LINE L1 4767 5756 -636 3308 115 40 14 chr1 210649275 210649299 -71544365 + L1PB4 LINE L1 5872 5894 -498 1585 151 0 0 chr1 210649299 210649524 -71544140 - AluSx SINE Alu -87 225 1 3308 115 40 14 chr1 210649524 210649995 -71543669 + L1PB4 LINE L1 5894 6380 -12 261 277 64 64 chr1 210650500 210650641 -71543023 + MIR3 SINE MIR 21 161 -47 650 277 78 5 chr1 210650664 210650870 -71542794 + MIR SINE MIR 14 234 -28 334 373 60 27 chr1 210650957 210651142 -71542522 - L2 LINE L2 -9 3263 3073 244 306 126 9 chr1 210651285 210651396 -71542268 + L2 LINE L2 3147 3270 -2 2496 84 0 0 chr1 210652240 210652550 -71541114 - AluSg SINE Alu 0 310 1 408 264 23 46 chr1 210652610 210652777 -71540887 - MIR3 SINE MIR -59 149 3 180 194 167 0 chr1 210652911 210652947 -71540717 + MIR3 SINE MIR 116 157 -51 231 361 9 9 chr1 210653258 210653366 -71540298 - L2 LINE L2 -218 3054 2947 1926 179 30 35 chr1 210654239 210654798 -71538866 + MLT2A1 LTR ERVL 1 554 0 381 278 85 39 chr1 210655338 210655555 -71538109 - MIR SINE MIR -9 253 20 624 303 114 54 chr1 210656150 210656702 -71536962 - L1ME4a LINE L1 -2 6119 5535 2369 149 5 14 chr1 210656918 210657287 -71536377 + MER47A DNA MER2_type 1 366 0 209 224 143 0 chr1 210658644 210658693 -71534971 - MIR SINE MIR -10 252 197 428 254 133 17 chr1 210658814 210658987 -71534677 + MIR3 SINE MIR 3 195 -13 2310 101 0 0 chr1 210659554 210659852 -71533812 + AluSx SINE Alu 1 298 -14 721 198 35 23 chr1 210660183 210660355 -71533309 - MIR SINE MIR 0 262 89 * 1320 271 57 33 chr1 210660345 210660401 -71533263 - L2 LINE L2 -50 3263 3210 2209 117 0 0 chr1 210660401 210660691 -71532973 - AluSg SINE Alu -5 305 16 2207 115 0 0 chr1 210660691 210660979 -71532685 - AluSx SINE Alu -24 288 1 1320 271 57 33 chr1 210660979 210661609 -71532055 - L2 LINE L2 -102 3211 2558 1178 270 55 44 chr1 210661702 210661784 -71531880 - MER90 LTR ERV1 -27 548 468 2227 107 0 7 chr1 210661784 210662083 -71531581 - AluSg SINE Alu -13 297 1 1661 167 0 60 chr1 210662083 210662400 -71531264 - AluJo SINE Alu -13 299 1 1178 270 55 44 chr1 210662400 210662790 -71530874 - MER90 LTR ERV1 -106 469 70 453 141 0 0 chr1 210663220 210663291 -71530373 + Alu SINE Alu 242 312 0 1305 40 11 6 chr1 210663312 210663489 -71530175 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 737 239 6 23 chr1 210663571 210663747 -71529917 + MIR SINE MIR 69 241 -21 1605 258 93 60 chr1 210663972 210664284 -71529380 - HAL1 LINE L1 -983 1524 1224 2416 84 10 3 chr1 210664284 210664595 -71529069 - AluSp SINE Alu 0 313 1 1605 258 93 60 chr1 210664595 210665128 -71528536 - HAL1 LINE L1 -1283 1224 651 386 276 32 16 chr1 210667623 210667746 -71525918 + MIR SINE MIR 47 171 -91 280 288 86 67 chr1 210668136 210668403 -71525261 + LTR67 LTR ERVL 255 526 -31 195 247 78 78 chr1 210668466 210668620 -71525044 + L2 LINE L2 3119 3272 -41 302 224 109 5 chr1 210668626 210668763 -71524901 + MIR SINE MIR 12 232 -30 213 195 0 0 chr1 210669562 210669603 -71524061 + C-rich Low_complexity Low_complexity 2 42 0 183 42 0 0 chr1 210669739 210669763 -71523901 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1985 78 3 41 chr1 210669765 210670058 -71523606 - AluSx SINE Alu -30 282 1 358 237 60 3 chr1 210670087 210670228 -71523436 - MIR SINE MIR -58 150 11 207 231 19 19 chr1 210670396 210670448 -71523216 - L2 LINE L2 -4 3268 3217 192 97 0 0 chr1 210670670 210670701 -71522963 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1605 123 104 25 chr1 210670701 210670981 -71522683 + MER39B LTR ERV1 48 341 -312 1758 151 11 46 chr1 210671045 210671403 -71522261 + MER4A LTR ERV1 261 664 0 2021 105 13 13 chr1 210671404 210671710 -71521954 + MER39B LTR ERV1 339 622 0 393 200 47 0 chr1 210672049 210672134 -71521530 + MIR SINE MIR 104 192 -70 239 253 46 11 chr1 210673114 210673201 -71520463 + MIR SINE MIR 48 137 -125 258 242 16 16 chr1 210673775 210673837 -71519827 - L2 LINE L2 -4 3309 3248 354 23 0 0 chr1 210674042 210674085 -71519579 + (CA)n Simple_repeat Simple_repeat 2 44 0 957 224 4 61 chr1 210675597 210675860 -71517804 + MIR SINE MIR 15 262 0 369 295 92 78 chr1 210675880 210676151 -71517513 - L2 LINE L2 -3 3269 2995 811 220 86 14 chr1 210676154 210676363 -71517301 + L1ME2 LINE L1 5932 6155 -9 1916 89 0 4 chr1 210677912 210678160 -71515504 - AluSq SINE Alu -65 248 2 255 228 0 35 chr1 210678406 210678463 -71515201 - MIR SINE MIR -10 252 198 794 320 71 6 chr1 210678529 210678854 -71514810 + LTR16A LTR ERVL 99 444 -6 417 250 83 0 chr1 210678858 210678954 -71514710 - MIR SINE MIR -65 197 94 256 298 0 0 chr1 210679023 210679080 -71514584 - MIR SINE MIR -190 72 16 347 0 23 0 chr1 210679240 210679283 -71514381 + (TG)n Simple_repeat Simple_repeat 1 44 0 237 309 0 0 chr1 210679310 210679365 -71514299 + MIR SINE MIR 53 107 -155 232 100 0 0 chr1 210679395 210679425 -71514239 + L2 LINE L2 3264 3293 -20 342 245 41 31 chr1 210679447 210679545 -71514119 + MIR SINE MIR 66 164 -98 351 272 138 94 chr1 210679866 210680237 -71513427 + L1M2 LINE L1 775 1161 -5688 203 189 0 0 chr1 210681904 210681941 -71511723 + T-rich Low_complexity Low_complexity 1 37 0 213 121 0 0 chr1 210682100 210682133 -71511531 + (TAA)n Simple_repeat Simple_repeat 2 34 0 895 253 168 45 chr1 210682992 210683730 -71509934 - L2 LINE L2 -8 3305 2494 260 33 0 0 chr1 210684245 210684275 -71509389 + (A)n Simple_repeat Simple_repeat 1 30 0 330 26 0 0 chr1 210685046 210685085 -71508579 + (CA)n Simple_repeat Simple_repeat 2 40 0 221 224 52 0 chr1 210685485 210685543 -71508121 - MIR SINE MIR -97 165 105 445 327 139 0 chr1 210686305 210686513 -71507151 - MIR SINE MIR -6 256 20 213 359 0 0 chr1 210686552 210686616 -71507048 + MIR3 SINE MIR 124 187 -21 207 146 0 0 chr1 210686699 210686740 -71506924 + (TG)n Simple_repeat Simple_repeat 1 41 0 475 292 64 12 chr1 210686931 210687102 -71506562 + MIR SINE MIR 20 199 -63 334 242 124 53 chr1 210687612 210687935 -71505729 - L1MC4a LINE L1 -3 6118 5769 334 229 52 10 chr1 210687934 210688030 -71505634 - L1MC4a LINE L1 -1926 5882 5783 403 278 116 6 chr1 210688053 210688226 -71505438 - L2 LINE L2 0 3272 3081 * 577 248 109 0 chr1 210688198 210688335 -71505329 + MIR SINE MIR 25 176 -86 202 357 101 13 chr1 210688450 210688688 -71504976 - L2 LINE L2 -248 3065 2807 312 260 152 28 chr1 210688694 210689106 -71504558 - L1MC4a LINE L1 -429 5755 5279 2245 115 3 0 chr1 210689173 210689468 -71504196 + AluSx SINE Alu 1 296 -16 199 258 82 107 chr1 210689824 210689983 -71503681 + L2 LINE L2 817 971 -2343 808 305 133 15 chr1 210690013 210690403 -71503261 + L2 LINE L2 1402 1837 -1477 3811 199 37 53 chr1 210690420 210691212 -71502452 - L1ME1 LINE L1 -6 6229 5446 2430 79 76 23 chr1 210691212 210691554 -71502110 - THE1B LTR MaLR -2 362 3 3811 199 37 53 chr1 210691554 210691751 -71501913 - L1ME1 LINE L1 -789 5446 5247 1680 149 63 45 chr1 210691751 210692086 -71501578 + MER46B DNA MER2_type 19 234 -2 2961 229 47 14 chr1 210692114 210692853 -71500811 - L1ME1 LINE L1 -5596 800 37 2129 122 3 0 chr1 210692874 210693169 -71500495 + AluSx SINE Alu 1 296 -16 188 397 0 0 chr1 210693196 210693269 -71500395 - L2 LINE L2 -611 2703 2631 680 250 11 60 chr1 210693269 210693453 -71500211 + MER96 DNA MER1_type? 1 175 0 414 322 92 0 chr1 210693453 210693627 -71500037 - L2 LINE L2 -676 2638 2449 323 310 43 17 chr1 210693627 210693804 -71499860 - MER63 DNA MER1_type -1 1061 27 275 325 25 0 chr1 210693951 210694031 -71499633 + L2 LINE L2 3169 3250 -22 16165 175 33 12 chr1 210695586 210700761 -71492903 - L1MA4 LINE L1 -4 7715 2428 633 200 107 7 chr1 210700735 210700885 -71492779 - L1MA4 LINE L1 -5163 1402 1238 * 2119 113 14 0 chr1 210701025 210701318 -71492346 - AluSc SINE Alu -12 297 1 287 396 52 0 chr1 210701703 210701895 -71491769 - L2 LINE L2 -9 3304 3103 372 301 19 83 chr1 210702097 210702207 -71491457 + L2 LINE L2 2644 2735 -579 2363 82 0 0 chr1 210702207 210702498 -71491166 + AluY SINE Alu 1 291 -20 372 301 19 83 chr1 210702498 210702603 -71491061 + L2 LINE L2 2735 2845 -469 231 226 22 109 chr1 210703902 210704039 -71489625 - Charlie8 DNA MER1_type -2242 175 51 471 228 32 16 chr1 210705267 210705390 -71488274 - MER46C DNA MER2_type -208 130 6 239 358 83 8 chr1 210705396 210705516 -71488148 - MIR SINE MIR -112 150 22 396 313 27 27 chr1 210706086 210706233 -71487431 - MIR SINE MIR -48 214 68 229 216 0 20 chr1 210706349 210706400 -71487264 - L2 LINE L2 -2 3311 3262 1211 164 33 9 chr1 210706458 210706672 -71486992 + MER20 DNA MER1_type 1 219 0 433 299 133 17 chr1 210706792 210707033 -71486631 + L2 LINE L2 3004 3272 0 430 308 53 6 chr1 210707113 210707282 -71486382 - MIR SINE MIR -66 196 20 189 259 0 56 chr1 210707851 210707905 -71485759 - L2 LINE L2 -13 3259 3209 231 250 0 0 chr1 210708332 210708376 -71485288 + L2 LINE L2 3206 3249 -23 1038 206 36 24 chr1 210708401 210708648 -71485016 + MLT1A2 LTR MaLR 1 250 -124 2456 76 0 3 chr1 210708737 210709039 -71484625 - AluY SINE Alu -10 301 1 1724 175 0 29 chr1 210709150 210709459 -71484205 + AluSx SINE Alu 1 300 -12 3940 98 2 6 chr1 210709464 210709977 -71483687 - MER9 LTR ERVK 0 511 1 46 19 0 0 chr1 210710081 210710134 -71483530 + AT_rich Low_complexity Low_complexity 1 53 0 232 220 0 0 chr1 210710368 210710418 -71483246 - MLT1J LTR MaLR -45 466 417 2053 282 75 21 chr1 210710468 210711501 -71482163 - L2 LINE L2 -73 3240 2149 738 239 5 35 chr1 210711524 210711721 -71481943 - MLT1J LTR MaLR -318 193 3 228 329 6 46 chr1 210711789 210712025 -71481639 + GA-rich Low_complexity Low_complexity 1 226 0 427 233 0 0 chr1 210712095 210712198 -71481466 + FRAM SINE Alu 74 176 0 973 69 0 0 chr1 210713154 210713270 -71480394 - AluSg/x SINE Alu -23 289 174 578 287 72 29 chr1 210713443 210713722 -71479942 - L1ME LINE L1 -335 5786 5496 363 306 87 18 chr1 210713921 210714140 -71479524 - L1ME LINE L1 -846 5300 5067 4401 194 26 30 chr1 210714419 210716103 -71477561 + L1MB8 LINE L1 4500 6175 -3 959 167 0 12 chr1 210716118 210716280 -71477384 - FRAM SINE Alu -19 157 1 337 208 313 0 chr1 210716928 210717024 -71476640 + MER5B DNA MER1_type 1 126 -52 438 262 10 0 chr1 210717024 210717127 -71476537 + L1MCa LINE L1 5 108 -6318 6478 143 65 14 chr1 210717127 210718300 -71475364 + Ricksha DNA DNA 2002 3233 -13 709 191 62 12 chr1 210718196 210718358 -71475306 - Ricksha DNA DNA -1876 170 1 * 311 284 28 14 chr1 210718497 210718638 -71475026 + LTR33 LTR ERVL 369 511 -10 186 103 0 0 chr1 210719096 210719125 -71474539 + (CCCCAG)n Simple_repeat Simple_repeat 2 30 0 1031 162 11 31 chr1 210719185 210719376 -71474288 - MER53 DNA DNA -2 187 1 805 142 0 0 chr1 210719845 210719996 -71473668 - AluJb SINE Alu 0 312 162 456 269 66 22 chr1 210720179 210720361 -71473303 - MIR SINE MIR -32 230 41 271 282 78 39 chr1 210721071 210721174 -71472490 + L2 LINE L2 3194 3300 -13 245 276 7 138 chr1 210721151 210721303 -71472361 - L2 LINE L2 -2 3270 3139 * 2478 206 86 34 chr1 210722247 210722840 -71470824 + MLT1E2 LTR MaLR 3 626 0 339 85 0 0 chr1 210723104 210723151 -71470513 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 253 238 155 107 chr1 210723163 210723331 -71470333 + MER102b DNA MER1_type 161 336 -5 419 294 18 30 chr1 210724548 210724733 -71468931 + MIR SINE MIR 23 205 -57 199 250 0 0 chr1 210724875 210724927 -71468737 - MIR SINE MIR -120 88 37 2517 148 8 5 chr1 210725824 210726216 -71467448 + L1PB4 LINE L1 5763 6155 -1 566 249 83 6 chr1 210727451 210727620 -71466044 + MIR3 SINE MIR 6 187 -21 1740 209 71 34 chr1 210727903 210727999 -71465665 + MSTD LTR MaLR 1 92 -304 2026 139 3 20 chr1 210727999 210728300 -71465364 + AluSp SINE Alu 1 296 -17 1740 209 71 34 chr1 210728300 210728585 -71465079 + MSTD LTR MaLR 92 396 0 198 259 17 0 chr1 210728587 210728645 -71465019 - MIR SINE MIR -73 135 77 2294 82 0 3 chr1 210728793 210729085 -71464579 + AluY SINE Alu 5 295 -16 2032 166 19 0 chr1 210729117 210729442 -71464222 - MER7A DNA MER2_type -17 329 1 293 293 30 6 chr1 210729442 210729609 -71464055 + (TA)n Simple_repeat Simple_repeat 2 172 0 186 303 93 49 chr1 210780036 210780198 -71413466 + L2 LINE L2 2417 2585 -729 215 263 0 0 chr1 210780712 210780769 -71412895 + L2 LINE L2 3255 3311 -2 * 241 282 78 39 chr1 210780746 210780849 -71412815 - L2 LINE L2 -13 3300 3194 402 269 66 22 chr1 210781559 210781741 -71411923 + MIR SINE MIR 41 230 -32 822 142 0 0 chr1 210781924 210782075 -71411589 + AluJb SINE Alu 162 312 0 994 162 11 31 chr1 210782544 210782735 -71410929 + MER53 DNA DNA 1 187 -2 186 103 0 0 chr1 210782795 210782824 -71410840 + (CTGGGG)n Simple_repeat Simple_repeat 2 30 0 316 284 28 14 chr1 210783282 210783423 -71410241 - LTR33 LTR ERVL -10 511 369 702 191 62 12 chr1 210783562 210783724 -71409940 + Ricksha DNA DNA 1 170 -1876 * 6409 142 65 14 chr1 210783620 210784793 -71408871 - Ricksha DNA DNA -13 3233 2002 434 262 10 0 chr1 210784793 210784896 -71408768 - L1MCa LINE L1 -6318 108 5 304 208 313 0 chr1 210784896 210784992 -71408672 - MER5B DNA MER1_type -52 126 1 963 167 0 12 chr1 210785640 210785802 -71407862 + FRAM SINE Alu 1 157 -19 4349 194 26 30 chr1 210785817 210787501 -71406163 - L1MB8 LINE L1 -3 6175 4500 333 306 87 18 chr1 210787780 210787999 -71405665 + L1ME LINE L1 5067 5300 -846 553 287 72 29 chr1 210788198 210788477 -71405187 + L1ME LINE L1 5496 5786 -335 984 69 0 0 chr1 210788650 210788766 -71404898 + AluSg/x SINE Alu 172 287 -23 404 209 0 0 chr1 210789722 210789819 -71403845 - AluJ/FRAM SINE Alu 0 312 216 214 335 6 46 chr1 210789895 210790131 -71403533 + CT-rich Low_complexity Low_complexity 1 226 0 740 239 5 35 chr1 210790199 210790396 -71403268 + MLT1J LTR MaLR 3 193 -318 1819 282 75 21 chr1 210790427 210791452 -71402212 + L2 LINE L2 2157 3240 -73 228 220 0 0 chr1 210791502 210791552 -71402112 + MLT1J LTR MaLR 417 466 -45 46 19 0 0 chr1 210791786 210791839 -71401825 + AT_rich Low_complexity Low_complexity 1 53 0 3751 98 2 6 chr1 210791943 210792456 -71401208 + MER9 LTR ERVK 1 511 0 1742 175 0 29 chr1 210792461 210792770 -71400894 - AluSx SINE Alu -12 300 1 2450 77 0 3 chr1 210792881 210793180 -71400484 + AluY SINE Alu 1 298 -13 1038 206 36 24 chr1 210793269 210793516 -71400148 - MLT1A2 LTR MaLR -124 250 1 214 250 0 0 chr1 210793541 210793585 -71400079 - L2 LINE L2 -23 3249 3206 363 314 53 6 chr1 210794636 210794805 -71398859 + MIR SINE MIR 20 196 -66 376 250 70 16 chr1 210794885 210795013 -71398651 - L2 LINE L2 0 3313 3179 1125 173 28 5 chr1 210795246 210795460 -71398204 - MER20 DNA MER1_type 0 219 1 213 216 0 20 chr1 210795518 210795569 -71398095 + L2 LINE L2 3262 3311 -2 358 324 21 28 chr1 210795685 210795830 -71397834 + MIR SINE MIR 68 211 -51 213 350 83 8 chr1 210796402 210796522 -71397142 + MIR SINE MIR 22 150 -112 480 219 32 16 chr1 210796528 210796651 -71397013 + MER46C DNA MER2_type 6 130 -208 1513 123 9 26 chr1 210797299 210797527 -71396137 + AluSx SINE Alu 1 224 -88 3271 106 34 0 chr1 210797627 210798099 -71395565 - L1P LINE L1 -5567 579 92 1225 88 6 47 chr1 210798099 210798269 -71395395 - AluSg SINE Alu -146 164 2 37 23 0 0 chr1 210798269 210798313 -71395351 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr1 210798384 210798405 -71395259 + AT_rich Low_complexity Low_complexity 1 21 0 4180 168 20 6 chr1 210798611 210799589 -71394075 + L1PB4 LINE L1 4531 5520 -636 3144 115 40 14 chr1 210799593 210799617 -71394047 + L1PB4 LINE L1 5636 5658 -498 1598 151 0 0 chr1 210799617 210799842 -71393822 - AluSx SINE Alu -87 225 1 3144 115 40 14 chr1 210799842 210800313 -71393351 + L1PB4 LINE L1 5658 6144 -12 214 277 64 64 chr1 210800818 210800959 -71392705 + MIR3 SINE MIR 21 161 -47 590 277 78 5 chr1 210800982 210801188 -71392476 + MIR SINE MIR 14 234 -28 278 370 32 26 chr1 210801306 210801460 -71392204 - L2 LINE L2 -45 3227 3073 203 294 29 0 chr1 210801646 210801714 -71391950 + L2 LINE L2 3201 3270 -2 2511 84 0 0 chr1 210802558 210802868 -71390796 - AluSg SINE Alu 0 310 1 363 292 35 14 chr1 210802951 210803095 -71390569 - MIR3 SINE MIR -59 149 3 202 361 9 9 chr1 210803576 210803684 -71389980 - L2 LINE L2 -218 3054 2947 1960 174 30 36 chr1 210804557 210805116 -71388548 + MLT2A1 LTR ERVL 1 554 0 331 298 127 6 chr1 210805656 210805837 -71387827 - MIR SINE MIR -9 253 51 556 299 118 56 chr1 210808137 210808688 -71384976 - L1ME4a LINE L1 -2 6119 5535 2247 149 5 14 chr1 210808904 210809273 -71384391 + MER47A DNA MER2_type 1 366 0 194 224 143 0 chr1 210810630 210810679 -71382985 - MIR SINE MIR -10 252 197 344 264 135 12 chr1 210810800 210810963 -71382701 + MIR3 SINE MIR 3 185 -23 2328 101 0 0 chr1 210811541 210811839 -71381825 + AluSx SINE Alu 1 298 -14 669 198 35 23 chr1 210812170 210812342 -71381322 - MIR SINE MIR 0 262 89 1194 269 56 30 chr1 210812350 210812388 -71381276 - L2 LINE L2 -68 3245 3209 2223 117 0 0 chr1 210812388 210812678 -71380986 - AluSg SINE Alu -5 305 16 2227 115 0 0 chr1 210812678 210812966 -71380698 - AluSx SINE Alu -24 288 1 1194 269 56 30 chr1 210812966 210813588 -71380076 - L2 LINE L2 -103 3210 2566 1174 270 55 44 chr1 210813689 210813771 -71379893 - MER90 LTR ERV1 -27 548 468 2245 107 0 7 chr1 210813771 210814070 -71379594 - AluSg SINE Alu -13 297 1 1669 167 0 60 chr1 210814070 210814387 -71379277 - AluJo SINE Alu -13 299 1 1174 270 55 44 chr1 210814387 210814777 -71378887 - MER90 LTR ERV1 -106 469 70 440 141 0 0 chr1 210815207 210815278 -71378386 + Alu SINE Alu 242 312 0 1323 39 11 6 chr1 210815301 210815480 -71378184 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 686 244 6 17 chr1 210815562 210815734 -71377930 + MIR SINE MIR 69 238 -24 463 332 58 8 chr1 210815734 210815975 -71377689 - MIR SINE MIR -6 256 4 2403 75 0 3 chr1 210816386 210816680 -71376984 - AluSq SINE Alu -20 293 1 206 271 21 0 chr1 210817230 210817278 -71376386 - L2 LINE L2 -20 3252 3204 254 200 406 0 chr1 210817286 210817451 -71376213 - MIR SINE MIR 0 262 31 255 261 6 139 chr1 210817637 210817802 -71375862 - L2 LINE L2 -193 3079 2937 303 244 114 46 chr1 210818346 210818477 -71375187 + MIR SINE MIR 48 187 -75 1514 165 22 15 chr1 210818841 210819114 -71374550 - AluJb SINE Alu -34 278 4 203 171 0 24 chr1 210819988 210820029 -71373635 + (CAA)n Simple_repeat Simple_repeat 3 42 0 243 0 0 0 chr1 210821391 210821418 -71372246 + (T)n Simple_repeat Simple_repeat 1 27 0 765 254 168 45 chr1 210821933 210822671 -71370993 + L2 LINE L2 2494 3305 -8 213 121 0 0 chr1 210823530 210823563 -71370101 + (TTA)n Simple_repeat Simple_repeat 2 34 0 203 189 0 0 chr1 210823722 210823759 -71369905 + A-rich Low_complexity Low_complexity 1 37 0 313 245 41 31 chr1 210826118 210826216 -71367448 - MIR SINE MIR -98 164 66 220 100 0 0 chr1 210826238 210826268 -71367396 - L2 LINE L2 -20 3293 3264 219 309 0 0 chr1 210826298 210826353 -71367311 - MIR SINE MIR -155 107 53 365 0 22 0 chr1 210826380 210826425 -71367239 + (CA)n Simple_repeat Simple_repeat 1 46 0 236 298 0 0 chr1 210826585 210826642 -71367022 + MIR SINE MIR 16 72 -190 390 250 83 0 chr1 210826711 210826807 -71366857 + MIR SINE MIR 94 197 -65 805 320 71 6 chr1 210826811 210827136 -71366528 - LTR16A LTR ERVL -6 444 99 238 228 0 35 chr1 210827202 210827259 -71366405 + MIR SINE MIR 198 252 -10 1940 89 0 4 chr1 210827505 210827753 -71365911 + AluSq SINE Alu 2 248 -65 801 220 86 14 chr1 210829303 210829512 -71364152 - L1ME2 LINE L1 -9 6155 5932 297 312 117 15 chr1 210829581 210829786 -71363878 + L2 LINE L2 3044 3269 -3 881 224 4 61 chr1 210829806 210830069 -71363595 - MIR SINE MIR 0 262 15 372 22 0 0 chr1 210831580 210831625 -71362039 + (TG)n Simple_repeat Simple_repeat 2 46 0 264 242 16 16 chr1 210831830 210831892 -71361772 + L2 LINE L2 3248 3309 -4 257 276 35 0 chr1 210832466 210832553 -71361111 - MIR SINE MIR -125 137 48 415 200 47 0 chr1 210833532 210833617 -71360047 - MIR SINE MIR -70 192 104 2013 105 13 13 chr1 210833956 210834262 -71359402 - MER39B LTR ERV1 0 630 339 1761 151 11 46 chr1 210834263 210834621 -71359043 - MER4A LTR ERV1 0 664 261 1613 123 104 25 chr1 210834685 210834965 -71358699 - MER39B LTR ERV1 -312 341 48 192 97 0 0 chr1 210834965 210834996 -71358668 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 219 211 19 19 chr1 210835218 210835270 -71358394 + L2 LINE L2 3258 3309 -4 369 244 58 3 chr1 210835438 210835579 -71358085 + MIR SINE MIR 11 160 -58 1896 85 0 41 chr1 210835608 210835928 -71357736 + AluSx SINE Alu 1 308 0 222 195 0 0 chr1 210836064 210836105 -71357559 + G-rich Low_complexity Low_complexity 2 42 0 309 224 109 5 chr1 210836904 210837041 -71356623 - MIR SINE MIR -30 232 12 219 247 78 78 chr1 210837047 210837201 -71356463 - L2 LINE L2 -41 3272 3119 308 288 86 67 chr1 210837264 210837531 -71356133 - LTR67 LTR ERVL -31 526 255 1374 262 91 47 chr1 210840629 210841162 -71352502 + HAL1 LINE L1 651 1222 -1285 2303 84 10 3 chr1 210841162 210841473 -71352191 + AluSp SINE Alu 1 313 0 1374 262 91 47 chr1 210841473 210841622 -71352042 + HAL1 LINE L1 1222 1363 -1144 313 249 90 94 chr1 210841725 210841926 -71351738 + HAL1 LINE L1 1329 1528 -979 30 27 0 0 chr1 210841942 210841979 -71351685 + AT_rich Low_complexity Low_complexity 1 37 0 1079 131 0 0 chr1 210841979 210842132 -71351532 - AluSg/x SINE Alu -22 288 136 1175 258 133 60 chr1 210842133 210842932 -71350732 + HAL1 LINE L1 1565 2421 -86 26 50 0 0 chr1 210843003 210843043 -71350621 + AT_rich Low_complexity Low_complexity 1 40 0 641 196 229 0 chr1 210843328 210843507 -71350157 + MIR SINE MIR 19 238 -24 192 267 109 20 chr1 210843513 210843614 -71350050 - L2 LINE L2 -5 3267 3158 2461 58 0 10 chr1 210843983 210844296 -71349368 - AluSg SINE Alu 0 310 1 210 269 75 43 chr1 210845341 210845434 -71348230 + L2 LINE L2 3173 3268 -4 228 329 13 0 chr1 210846400 210846479 -71347185 + MIR SINE MIR 122 201 -61 961 211 35 62 chr1 210846701 210846990 -71346674 - L1ME1 LINE L1 -5 6161 5881 335 278 9 53 chr1 210847035 210847200 -71346464 + MIR SINE MIR 25 182 -58 208 121 0 0 chr1 210847297 210847330 -71346334 + (TG)n Simple_repeat Simple_repeat 2 34 0 2311 139 40 10 chr1 210847960 210848356 -71345308 - L1MC1 LINE L1 -1 6332 5925 2363 216 93 35 chr1 210848365 210849077 -71344587 - L1ME2 LINE L1 -3 6161 5409 902 227 42 43 chr1 210849548 210849841 -71343823 - L1ME2 LINE L1 -734 5430 5138 2153 114 10 0 chr1 210849841 210850149 -71343515 - AluSx SINE Alu -1 311 1 902 227 42 43 chr1 210850149 210850261 -71343403 - L1ME2 LINE L1 -1026 5138 5027 312 315 31 24 chr1 210850488 210850615 -71343049 + L2 LINE L2 3186 3313 0 206 246 35 35 chr1 210851582 210851639 -71342025 + L2 LINE L2 3216 3272 0 194 340 0 0 chr1 210852196 210852246 -71341418 - L2 LINE L2 -8 3264 3215 300 315 65 0 chr1 210852291 210852399 -71341265 - MIR SINE MIR -120 142 28 791 265 22 29 chr1 210853333 210853605 -71340059 - L1ME1 LINE L1 -281 5889 5620 467 229 46 18 chr1 210853605 210853714 -71339950 - MIR SINE MIR -120 142 31 2737 128 50 35 chr1 210853821 210854304 -71339360 + LTR2B LTR ERV1 1 490 0 27 62 0 0 chr1 210854382 210854430 -71339234 + AT_rich Low_complexity Low_complexity 1 48 0 785 261 22 29 chr1 210854430 210854702 -71338962 - L1ME3A LINE L1 -281 5889 5620 505 216 0 10 chr1 210854702 210854799 -71338865 - MIR SINE MIR -120 142 47 1180 77 0 11 chr1 210856982 210857232 -71336432 + AluSg1 SINE Alu 2 312 0 2142 108 0 3 chr1 210857772 210858078 -71335586 + AluSc SINE Alu 1 305 -4 526 285 40 41 chr1 210858141 210858378 -71335286 - MIR SINE MIR -13 249 14 664 204 27 75 chr1 210858979 210859144 -71334520 + MIR SINE MIR 1 158 -104 1899 162 48 16 chr1 210859144 210859521 -71334143 + MLT1B LTR MaLR 1 389 -1 664 204 27 75 chr1 210859521 210859541 -71334123 + MIR SINE MIR 158 177 -85 1344 173 39 25 chr1 210859545 210859828 -71333836 + AluJo SINE Alu 1 287 -25 2450 68 3 0 chr1 210860102 210860412 -71333252 + AluY SINE Alu 1 311 0 612 285 109 0 chr1 210860704 210860897 -71332767 - MIR SINE MIR -21 241 28 1657 194 22 19 chr1 210861128 210861488 -71332176 + MLT1A1 LTR MaLR 5 365 0 920 181 12 12 chr1 210865440 210865611 -71328053 - MER5B DNA MER1_type 0 178 8 590 279 55 24 chr1 210865629 210865794 -71327870 + MER5A DNA MER1_type 20 189 0 209 204 0 0 chr1 210865968 210866012 -71327652 + (CCTTG)n Simple_repeat Simple_repeat 3 46 0 2396 145 8 5 chr1 210869059 210869451 -71324213 - L1PB4 LINE L1 -1 6155 5763 199 250 0 0 chr1 210870348 210870400 -71323264 + MIR SINE MIR 37 88 -120 442 294 18 30 chr1 210870542 210870727 -71322937 - MIR SINE MIR -57 151 23 274 238 155 107 chr1 210871944 210872112 -71321552 - MER102b DNA MER1_type -5 336 161 339 85 0 0 chr1 210872124 210872171 -71321493 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2212 215 90 19 chr1 210872435 210872971 -71320693 - MLT1E2 LTR MaLR 0 626 53 266 351 28 57 chr1 210874362 210874573 -71319091 - MIR SINE MIR -43 219 15 469 204 11 0 chr1 210875027 210875115 -71318549 - MIR SINE MIR -122 140 52 2165 97 7 10 chr1 210875780 210876078 -71317586 + AluSx SINE Alu 3 299 -13 1930 133 7 3 chr1 210876145 210876439 -71317225 + AluSq SINE Alu 1 295 -18 26 0 0 0 chr1 210877022 210877048 -71316616 + AT_rich Low_complexity Low_complexity 1 26 0 2189 89 0 26 chr1 210877232 210877536 -71316128 - AluSc SINE Alu -13 296 1 1135 189 42 0 chr1 210877906 210878118 -71315546 + AluJb SINE Alu 1 221 -91 370 270 18 18 chr1 210878120 210878231 -71315433 + MER94 DNA DNA 24 134 0 1575 199 114 24 chr1 210878552 210878929 -71314735 - MER47B DNA MER2_type 0 418 8 651 264 75 0 chr1 210879704 210879863 -71313801 + MIR SINE MIR 23 193 -69 592 274 62 34 chr1 210880073 210880281 -71313383 - MIR SINE MIR 0 262 49 1753 103 4 4 chr1 210880607 210880891 -71312773 - AluSg SINE Alu 0 313 30 1259 120 0 16 chr1 210881185 210881368 -71312296 - AluSg/x SINE Alu -19 293 114 1230 109 0 0 chr1 210881469 210881481 -71312183 + AluSg/x SINE Alu 125 296 -13 797 200 81 0 chr1 210881481 210881641 -71312023 + FAM SINE Alu 1 173 -2 1398 197 29 0 chr1 210881641 210881920 -71311744 + Charlie4a DNA MER1_type 31 317 -191 2030 124 0 33 chr1 210881926 210882284 -71311380 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr1 210882794 210882823 -71310841 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 210882869 210882891 -71310773 + AT_rich Low_complexity Low_complexity 1 22 0 439 299 134 37 chr1 210882998 210883185 -71310479 + MIR SINE MIR 8 212 -50 760 180 139 102 chr1 210883399 210883694 -71309970 + L1MC4 LINE L1 7460 7765 -277 530 191 219 51 chr1 210885082 210885260 -71308404 + MER63A DNA MER1_type 1 208 -2 2275 85 3 0 chr1 210885620 210885937 -71307727 - AluSp SINE Alu 0 318 1 1682 157 49 7 chr1 210886306 210886592 -71307072 + AluJo SINE Alu 1 298 -14 301 237 216 36 chr1 210887558 210887697 -71305967 - MER5A DNA MER1_type -1 188 25 267 186 23 0 chr1 210887982 210888025 -71305639 + Alu SINE Alu 1 44 -255 283 275 94 22 chr1 210888684 210888822 -71304842 - MIR SINE MIR -50 212 65 2027 133 10 10 chr1 210888859 210889167 -71304497 - AluSx SINE Alu -4 308 1 2280 108 0 3 chr1 210889887 210890194 -71303470 + AluSq SINE Alu 1 306 -7 194 236 100 73 chr1 210890258 210890368 -71303296 + MIR SINE MIR 102 214 -48 2222 111 10 3 chr1 210891571 210891878 -71301786 - AluY SINE Alu -2 309 1 230 346 135 10 chr1 210891908 210892012 -71301652 - L2 LINE L2 -33 3239 3123 2090 123 20 0 chr1 210892429 210892731 -71300933 + AluSx SINE Alu 2 309 -3 506 290 55 30 chr1 210892931 210893131 -71300533 + LTR67 LTR ERVL 353 557 0 295 357 45 0 chr1 210893142 210893254 -71300410 - MIR SINE MIR -125 137 21 388 168 84 42 chr1 210893830 210893925 -71299739 + MLT1J LTR MaLR 313 470 -35 2936 163 25 10 chr1 210894040 210894520 -71299144 + LTR42 LTR ERVL 9 495 0 515 256 35 55 chr1 210894552 210894841 -71298823 - L1MEd LINE L1 -5014 1105 823 1299 177 22 37 chr1 210894845 210895178 -71298486 + MLT1A1 LTR MaLR 6 365 0 316 256 90 39 chr1 210895178 210895334 -71298330 - L1MEd LINE L1 -5291 828 665 437 321 52 78 chr1 210895496 210895650 -71298014 - L1MEd LINE L1 -5657 462 306 965 168 16 21 chr1 210895650 210895840 -71297824 - MER53 DNA DNA 0 189 1 437 321 52 78 chr1 210895840 210896039 -71297625 - L1MEd LINE L1 -5813 306 103 1744 175 3 3 chr1 210896039 210896324 -71297340 + AluSx SINE Alu 1 285 -27 194 62 31 0 chr1 210896327 210896359 -71297305 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 437 321 52 78 chr1 210896359 210896464 -71297200 - L1MEd LINE L1 -6018 101 11 645 274 165 16 chr1 210897729 210898159 -71295505 - L1ME4a LINE L1 -7 6114 5621 2132 119 10 10 chr1 210898310 210898613 -71295051 + AluSx SINE Alu 2 304 -8 2284 120 0 3 chr1 210898878 210899186 -71294478 - AluJb SINE Alu -5 307 1 934 169 0 0 chr1 210899590 210899720 -71293944 - FLAM_A SINE Alu 0 133 4 22 35 0 0 chr1 210899723 210899752 -71293912 + AT_rich Low_complexity Low_complexity 1 29 0 2084 114 24 0 chr1 210900817 210901106 -71292558 + AluSx SINE Alu 6 301 -11 321 288 94 35 chr1 210901172 210901342 -71292322 + MIR SINE MIR 73 252 -10 330 243 235 7 chr1 210901896 210902032 -71291632 - MER5A DNA MER1_type -7 182 16 229 290 14 0 chr1 210902078 210902147 -71291517 - L2 LINE L2 -583 2731 2662 411 280 26 83 chr1 210902227 210902288 -71291376 - MIR3 SINE MIR -23 185 122 2253 104 0 3 chr1 210902288 210902585 -71291079 - AluSc SINE Alu -13 296 1 411 280 26 83 chr1 210902585 210902716 -71290948 - MIR3 SINE MIR -86 122 4 186 43 0 0 chr1 210903150 210903173 -71290491 + (T)n Simple_repeat Simple_repeat 1 23 0 254 289 41 10 chr1 210903977 210904074 -71289590 - MIR SINE MIR -39 223 124 4358 171 39 13 chr1 210904222 210905053 -71288611 + L1MA8 LINE L1 5438 6289 -2 806 153 65 0 chr1 210905190 210905314 -71288350 - AluSq/x SINE Alu -180 133 2 1239 179 86 86 chr1 210905843 210906145 -71287519 + AluJo SINE Alu 1 302 0 344 176 0 14 chr1 210906295 210906369 -71287295 + CT-rich Low_complexity Low_complexity 4 76 0 1780 156 60 0 chr1 210906371 210906654 -71287010 - AluSx SINE Alu -8 304 5 256 264 74 134 chr1 210906884 210907316 -71286348 + L3 LINE CR1 1157 1562 -15 1230 140 20 113 chr1 210908016 210908233 -71285431 + L1MB8 LINE L1 5894 6130 -48 1271 150 100 133 chr1 210908233 210908593 -71285071 - MER7A DNA MER2_type 0 346 1 1230 140 20 113 chr1 210908593 210908615 -71285049 + L1MB8 LINE L1 6130 6103 -75 1127 164 186 74 chr1 210908615 210908884 -71284780 + AluJo SINE Alu 1 299 -3 1230 140 20 113 chr1 210908884 210908943 -71284721 + L1MB8 LINE L1 6102 6165 -13 600 231 75 38 chr1 210908943 210909129 -71284535 - L2 LINE L2 -21 3292 3100 261 204 23 11 chr1 210909166 210909254 -71284410 + (TG)n Simple_repeat Simple_repeat 2 90 0 541 306 120 16 chr1 210909267 210909509 -71284155 - L2 LINE L2 -241 3072 2806 330 356 0 10 chr1 210909805 210909906 -71283758 - MIR3 SINE MIR -107 101 2 5916 76 30 22 chr1 210910257 210911402 -71282262 + SVA Other Other 1 868 -520 702 248 126 9 chr1 210911584 210911814 -71281850 - MIR SINE MIR 0 262 6 581 324 114 16 chr1 210913010 210913396 -71280268 - L2 LINE L2 -511 2803 2380 230 145 16 137 chr1 210913540 210913664 -71280000 + Charlie7 DNA MER1_type 2429 2537 -75 437 261 94 108 chr1 210913699 210914135 -71279529 + MLT1J2 LTR MaLR 1 434 -16 389 288 21 84 chr1 210915590 210915781 -71277883 + MIR SINE MIR 9 187 -75 237 228 35 18 chr1 210916408 210916465 -71277199 - LTR33A LTR ERVL -3 520 463 21 0 0 0 chr1 210916941 210916962 -71276702 + AT_rich Low_complexity Low_complexity 1 21 0 291 202 252 42 chr1 210916999 210917118 -71276546 + LTR45 LTR ERV1 1 144 -381 237 163 23 0 chr1 210917128 210917171 -71276493 + MER5A DNA MER1_type 25 68 -121 657 210 21 14 chr1 210917190 210917333 -71276331 + LTR45 LTR ERV1 382 525 0 2773 101 10 3 chr1 210917692 210918080 -71275584 + MER61E LTR ERV1 1 391 -178 1196 182 14 5 chr1 210918221 210918435 -71275229 - L1PB4 LINE L1 -6 6150 5935 210 354 89 6 chr1 210918537 210918695 -71274969 + L2 LINE L2 1851 2021 -1293 264 323 133 6 chr1 210918722 210918880 -71274784 - MER5B DNA MER1_type 0 178 1 2297 116 0 0 chr1 210918983 210919284 -71274380 - AluSx SINE Alu -11 301 1 1874 142 32 26 chr1 210919488 210919798 -71273866 - AluJb SINE Alu 0 312 1 221 302 172 65 chr1 210920064 210920078 -71273586 - L3 LINE CR1 -119 1458 1447 846 193 122 39 chr1 210920078 210920132 -71273532 + ORSL DNA AcHobo 1 49 -226 1907 100 4 0 chr1 210920132 210920382 -71273282 + AluY SINE Alu 45 295 -16 846 193 122 39 chr1 210920382 210920581 -71273083 + ORSL DNA AcHobo 49 275 0 221 302 172 65 chr1 210920581 210920735 -71272929 - L3 LINE CR1 -130 1447 1272 567 262 146 12 chr1 210920752 210920916 -71272748 + MER5A DNA MER1_type 4 189 0 821 259 108 4 chr1 210920929 210921161 -71272503 - MIR SINE MIR 0 262 7 282 272 96 7 chr1 210921709 210921845 -71271819 - L3 LINE CR1 -313 1264 1117 2005 57 28 0 chr1 210922594 210922842 -71270822 - L1PA13 LINE L1 0 6163 5909 2065 103 4 0 chr1 210922842 210923123 -71270541 + L1PA13 LINE L1 5648 5929 -239 240 244 0 146 chr1 210924483 210924606 -71269058 - MER102a DNA MER1_type -4 326 222 349 257 79 10 chr1 210925081 210925182 -71268482 + L2 LINE L2 3165 3272 0 633 237 75 0 chr1 210926461 210926582 -71267082 - MIR SINE MIR -15 247 108 1537 119 33 20 chr1 210926582 210926826 -71266838 + L1PA8 LINE L1 5924 6170 -2 633 237 75 0 chr1 210926826 210926877 -71266787 - MIR SINE MIR -154 108 62 2989 181 49 13 chr1 210926878 210927552 -71266112 + L1 LINE L1 4579 5276 -870 366 275 28 51 chr1 210927712 210927890 -71265774 + L2 LINE L2 3127 3300 -13 6866 141 75 10 chr1 210928123 210928739 -71264925 - Tigger3b DNA MER2_type -1798 1230 655 207 0 0 0 chr1 210928739 210928762 -71264902 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6866 141 75 10 chr1 210928762 210929300 -71264364 - Tigger3b DNA MER2_type -2373 655 1 222 260 0 55 chr1 210929463 210929536 -71264128 + MIR SINE MIR 73 141 -121 397 371 18 12 chr1 210930365 210930535 -71263129 - L2 LINE L2 0 3272 3102 1695 117 57 30 chr1 210932703 210933002 -71260662 + AluSc SINE Alu 3 309 0 1670 143 71 75 chr1 210934189 210934331 -71259333 + L1MB7 LINE L1 5761 5902 -282 1433 198 18 11 chr1 210934331 210934614 -71259050 + AluJb SINE Alu 1 285 -27 234 0 0 0 chr1 210934614 210934640 -71259024 + (CA)n Simple_repeat Simple_repeat 2 27 0 1670 143 71 75 chr1 210934640 210934702 -71258962 + L1MB7 LINE L1 5901 5962 -222 1875 108 87 0 chr1 210934702 210934989 -71258675 + AluSp SINE Alu 1 312 -1 1670 143 71 75 chr1 210934989 210935207 -71258457 + L1MB7 LINE L1 5962 6183 -1 249 317 57 24 chr1 210935857 210935980 -71257684 + MLT1K LTR MaLR 65 191 -397 297 0 0 0 chr1 210936429 210936462 -71257202 + (CA)n Simple_repeat Simple_repeat 1 33 0 319 215 62 0 chr1 210936718 210936783 -71256881 + LTR16B LTR ERVL 394 462 -2 208 147 0 0 chr1 210937067 210937101 -71256563 + (T)n Simple_repeat Simple_repeat 1 34 0 430 205 129 144 chr1 210937106 210937369 -71256295 + MIR SINE MIR 3 261 -1 2150 57 4 0 chr1 210939115 210939444 -71254220 - AluSq SINE Alu 0 330 1 1010 244 23 5 chr1 210940629 210940850 -71252814 - MIR SINE MIR -22 240 16 197 271 17 0 chr1 210940885 210940944 -71252720 - L2 LINE L2 -963 2351 2292 262 325 12 0 chr1 210941718 210941798 -71251866 - MIR SINE MIR -180 82 2 956 211 139 0 chr1 210942306 210942515 -71251149 - MER8 DNA MER2_type 0 239 2 440 141 0 0 chr1 210944074 210944145 -71249519 + Alu SINE Alu 242 312 0 1178 52 12 12 chr1 210944148 210944321 -71249343 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 764 244 6 17 chr1 210944401 210944573 -71249091 + MIR SINE MIR 69 238 -24 554 332 58 8 chr1 210944573 210944814 -71248850 - MIR SINE MIR -6 256 4 2271 75 0 3 chr1 210945225 210945519 -71248145 - AluSq SINE Alu -20 293 1 212 269 60 30 chr1 210946075 210946142 -71247522 - L2 LINE L2 -27 3286 3218 * 338 227 338 15 chr1 210946125 210946323 -71247341 - MIR SINE MIR 0 262 1 299 320 92 68 chr1 210946476 210946947 -71246717 - L2 LINE L2 -193 3079 2594 359 254 109 43 chr1 210947185 210947323 -71246341 + MIR SINE MIR 48 194 -68 1412 165 22 15 chr1 210947680 210947953 -71245711 - AluJb SINE Alu -34 278 4 203 171 0 24 chr1 210948827 210948868 -71244796 + (CAA)n Simple_repeat Simple_repeat 3 42 0 234 0 0 0 chr1 210950111 210950137 -71243527 + (T)n Simple_repeat Simple_repeat 1 26 0 929 256 152 39 chr1 210950652 210951390 -71242274 + L2 LINE L2 2494 3305 -8 213 121 0 0 chr1 210952249 210952282 -71241382 + (TTA)n Simple_repeat Simple_repeat 2 34 0 203 189 0 0 chr1 210952441 210952478 -71241186 + A-rich Low_complexity Low_complexity 1 37 0 350 245 41 31 chr1 210954838 210954936 -71238728 - MIR SINE MIR -98 164 66 234 100 0 0 chr1 210954958 210954988 -71238676 - L2 LINE L2 -20 3293 3264 239 309 0 0 chr1 210955018 210955073 -71238591 - MIR SINE MIR -155 107 53 365 0 22 0 chr1 210955100 210955145 -71238519 + (CA)n Simple_repeat Simple_repeat 1 46 0 253 298 0 0 chr1 210955305 210955362 -71238302 + MIR SINE MIR 16 72 -190 434 250 83 0 chr1 210955431 210955527 -71238137 + MIR SINE MIR 94 197 -65 825 320 71 6 chr1 210955531 210955856 -71237808 - LTR16A LTR ERVL -6 444 99 263 228 0 35 chr1 210955922 210955979 -71237685 + MIR SINE MIR 198 252 -10 1829 89 0 4 chr1 210956225 210956473 -71237191 + AluSq SINE Alu 2 248 -65 796 220 86 14 chr1 210958023 210958232 -71235432 - L1ME2 LINE L1 -9 6155 5932 374 295 92 78 chr1 210958235 210958506 -71235158 + L2 LINE L2 2995 3269 -3 977 224 4 61 chr1 210958526 210958789 -71234875 - MIR SINE MIR 0 262 15 444 19 0 0 chr1 210960300 210960353 -71233311 + (TG)n Simple_repeat Simple_repeat 2 54 0 264 242 16 16 chr1 210960558 210960620 -71233044 + L2 LINE L2 3248 3309 -4 257 276 35 0 chr1 210961194 210961281 -71232383 - MIR SINE MIR -125 137 48 415 200 47 0 chr1 210962260 210962345 -71231319 - MIR SINE MIR -70 192 104 2013 105 13 13 chr1 210962684 210962990 -71230674 - MER39B LTR ERV1 0 630 339 1761 151 11 46 chr1 210962991 210963349 -71230315 - MER4A LTR ERV1 0 664 261 1593 127 104 25 chr1 210963413 210963693 -71229971 - MER39B LTR ERV1 -312 341 48 219 211 19 19 chr1 210963945 210963997 -71229667 + L2 LINE L2 3258 3309 -4 369 244 58 3 chr1 210964165 210964306 -71229358 + MIR SINE MIR 11 160 -58 1906 79 3 31 chr1 210964335 210964651 -71229013 + AluSx SINE Alu 1 308 0 222 195 0 0 chr1 210964787 210964828 -71228836 + G-rich Low_complexity Low_complexity 2 42 0 309 224 109 5 chr1 210965627 210965764 -71227900 - MIR SINE MIR -30 232 12 219 247 78 78 chr1 210965770 210965924 -71227740 - L2 LINE L2 -41 3272 3119 308 288 86 67 chr1 210965987 210966254 -71227410 - LTR67 LTR ERVL -31 526 255 396 276 32 16 chr1 210966646 210966769 -71226895 - MIR SINE MIR -91 171 47 1140 251 94 51 chr1 210969266 210969796 -71223868 + HAL1 LINE L1 651 1203 -1304 2150 83 10 3 chr1 210969799 210970087 -71223577 + AluSp SINE Alu 1 290 -23 441 264 93 74 chr1 210970227 210970496 -71223168 + HAL1 LINE L1 1255 1528 -979 37 0 0 0 chr1 210970512 210970549 -71223115 + AT_rich Low_complexity Low_complexity 1 37 0 1079 131 0 0 chr1 210970549 210970702 -71222962 - AluSg/x SINE Alu -22 290 138 1179 258 132 62 chr1 210970703 210971504 -71222160 + HAL1 LINE L1 1565 2421 -86 26 50 0 0 chr1 210971575 210971615 -71222049 + AT_rich Low_complexity Low_complexity 1 40 0 641 196 229 0 chr1 210971900 210972079 -71221585 + MIR SINE MIR 19 238 -24 192 267 109 20 chr1 210972085 210972186 -71221478 - L2 LINE L2 -5 3267 3158 2473 54 0 10 chr1 210972553 210972866 -71220798 - AluSg SINE Alu 0 310 1 210 269 75 43 chr1 210973911 210974004 -71219660 + L2 LINE L2 3173 3268 -4 228 329 13 0 chr1 210974970 210975049 -71218615 + MIR SINE MIR 122 201 -61 961 211 35 62 chr1 210975271 210975560 -71218104 - L1ME1 LINE L1 -5 6161 5881 335 278 9 53 chr1 210975605 210975770 -71217894 + MIR SINE MIR 25 182 -58 208 121 0 0 chr1 210975867 210975900 -71217764 + (TG)n Simple_repeat Simple_repeat 2 34 0 2311 139 40 10 chr1 210976530 210976926 -71216738 - L1MC1 LINE L1 -1 6332 5925 2320 219 93 35 chr1 210976935 210977647 -71216017 - L1ME2 LINE L1 -3 6161 5409 919 226 42 43 chr1 210978119 210978412 -71215252 - L1ME2 LINE L1 -732 5430 5138 2153 114 10 0 chr1 210978412 210978720 -71214944 - AluSx SINE Alu -1 311 1 919 226 42 43 chr1 210978720 210978832 -71214832 - L1ME2 LINE L1 -1024 5138 5027 342 331 31 24 chr1 210979059 210979186 -71214478 + L2 LINE L2 3145 3272 0 206 246 35 35 chr1 210980153 210980210 -71213454 + L2 LINE L2 3216 3272 0 194 340 0 0 chr1 210980767 210980817 -71212847 - L2 LINE L2 -8 3264 3215 300 315 65 0 chr1 210980862 210980970 -71212694 - MIR SINE MIR -120 142 28 804 261 22 29 chr1 210981904 210982176 -71211488 - L1ME1 LINE L1 -281 5889 5620 467 229 46 18 chr1 210982176 210982285 -71211379 - MIR SINE MIR -120 142 31 2744 130 48 35 chr1 210982392 210982876 -71210788 + LTR2B LTR ERV1 1 490 0 27 62 0 0 chr1 210982954 210983002 -71210662 + AT_rich Low_complexity Low_complexity 1 48 0 778 261 22 29 chr1 210983002 210983274 -71210390 - L1ME3A LINE L1 -281 5889 5620 505 216 0 10 chr1 210983274 210983371 -71210293 - MIR SINE MIR -120 142 47 1180 77 0 11 chr1 210985554 210985804 -71207860 + AluSg SINE Alu 2 312 0 2142 108 0 3 chr1 210986344 210986650 -71207014 + AluSc SINE Alu 1 305 -4 526 285 40 41 chr1 210986713 210986950 -71206714 - MIR SINE MIR -13 249 14 674 210 27 75 chr1 210987551 210987716 -71205948 + MIR SINE MIR 1 158 -104 1899 162 48 16 chr1 210987716 210988093 -71205571 + MLT1B LTR MaLR 1 389 -1 674 210 27 75 chr1 210988093 210988113 -71205551 + MIR SINE MIR 158 177 -85 1344 173 39 25 chr1 210988117 210988400 -71205264 + AluJo SINE Alu 1 287 -25 2450 68 3 0 chr1 210988674 210988984 -71204680 + AluY SINE Alu 1 311 0 612 285 109 0 chr1 210989275 210989468 -71204196 - MIR SINE MIR -21 241 28 1657 194 22 19 chr1 210989699 210990059 -71203605 + MLT1A1 LTR MaLR 5 365 0 920 181 12 12 chr1 210993396 210993567 -71200097 - MER5B DNA MER1_type 0 178 8 580 285 55 24 chr1 210993585 210993750 -71199914 + MER5A DNA MER1_type 20 189 0 209 204 0 0 chr1 210993924 210993968 -71199696 + (CCTTG)n Simple_repeat Simple_repeat 3 46 0 266 351 28 57 chr1 210997066 210997277 -71196387 - MIR SINE MIR -43 219 15 469 204 11 0 chr1 210997731 210997819 -71195845 - MIR SINE MIR -122 140 52 2165 97 7 10 chr1 210998484 210998782 -71194882 + AluSx SINE Alu 3 299 -13 1930 133 7 3 chr1 210998849 210999143 -71194521 + AluSq SINE Alu 1 295 -18 26 0 0 0 chr1 210999726 210999752 -71193912 + AT_rich Low_complexity Low_complexity 1 26 0 2189 89 0 26 chr1 210999936 211000240 -71193424 - AluSc SINE Alu -13 296 1 1135 189 42 0 chr1 211000610 211000822 -71192842 + AluJb SINE Alu 1 221 -91 370 270 18 18 chr1 211000824 211000935 -71192729 + MER94 DNA DNA 24 134 0 1575 199 114 24 chr1 211001256 211001633 -71192031 - MER47B DNA MER2_type 0 418 8 320 216 75 7 chr1 211002482 211002560 -71191104 - MIR SINE MIR -60 148 68 191 294 100 116 chr1 211002617 211002978 -71190686 - L2 LINE L2 -1 3271 2917 442 335 71 60 chr1 211003073 211003444 -71190220 - L2 LINE L2 -1247 2067 1687 2209 112 0 0 chr1 211003444 211003748 -71189916 + AluSg SINE Alu 1 304 -6 442 335 71 60 chr1 211003748 211003896 -71189768 - L2 LINE L2 -1627 1687 1542 497 303 66 25 chr1 211004042 211004240 -71189424 - MIR SINE MIR -26 236 31 248 278 22 56 chr1 211004533 211004623 -71189041 - L2 LINE L2 -51 3262 3176 444 363 14 14 chr1 211005018 211005230 -71188434 - MIR SINE MIR -10 252 41 487 242 55 42 chr1 211005574 211005739 -71187925 + MIR3 SINE MIR 1 167 -41 591 241 60 65 chr1 211005948 211006147 -71187517 + MIR SINE MIR 63 260 -2 229 227 40 40 chr1 211007303 211007378 -71186286 + CT-rich Low_complexity Low_complexity 5 79 0 745 270 35 26 chr1 211007631 211007861 -71185803 + MIR SINE MIR 31 262 0 909 161 0 0 chr1 211008741 211008884 -71184780 + FRAM SINE Alu 11 153 -23 2051 112 0 0 chr1 211009449 211009726 -71183938 + AluSg SINE Alu 1 277 -33 566 323 45 0 chr1 211010146 211010347 -71183317 - MIR SINE MIR -3 259 50 639 278 28 0 chr1 211010783 211010959 -71182705 - MER5A DNA MER1_type 0 189 9 315 191 0 0 chr1 211011536 211011604 -71182060 + GA-rich Low_complexity Low_complexity 4 71 0 378 42 0 0 chr1 211011830 211011878 -71181786 + (CA)n Simple_repeat Simple_repeat 2 49 0 320 302 29 50 chr1 211012439 211012578 -71181086 - MIR3 SINE MIR -50 158 23 188 256 93 23 chr1 211012706 211012792 -71180872 - L3 LINE CR1 -809 768 677 * 246 294 59 72 chr1 211012774 211012927 -71180737 + L2 LINE L2 3122 3272 0 1418 214 7 7 chr1 211013558 211013857 -71179807 - AluJb SINE Alu -11 301 3 760 167 8 0 chr1 211013877 211013997 -71179667 - FLAM_C SINE Alu -9 124 4 197 221 52 78 chr1 211014986 211015063 -71178601 - MIR SINE MIR -114 94 20 299 320 72 8 chr1 211016413 211016538 -71177126 + MIR SINE MIR 113 245 -17 853 155 0 0 chr1 211017882 211018011 -71175653 - FLAM_A SINE Alu -4 129 1 1095 172 67 0 chr1 211018032 211018241 -71175423 + MER58A DNA MER1_type 1 223 -1 243 270 108 0 chr1 211018449 211018523 -71175141 - L3 LINE CR1 -20 1557 1476 21 0 0 0 chr1 211020689 211020710 -71172954 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 211020748 211020779 -71172885 + AT_rich Low_complexity Low_complexity 1 31 0 182 150 25 0 chr1 211021839 211021879 -71171785 + (CA)n Simple_repeat Simple_repeat 1 41 0 940 148 118 6 chr1 211022917 211023086 -71170578 + MER5A DNA MER1_type 2 189 0 433 244 44 98 chr1 211023267 211023492 -71170172 - MIR SINE MIR -46 216 4 515 263 24 31 chr1 211023913 211024128 -71169536 - MIR SINE MIR -4 258 16 191 324 9 36 chr1 211024779 211024890 -71168774 + MIR SINE MIR 23 130 -78 180 77 0 0 chr1 211025233 211025259 -71168405 + (CCCTAA)n Simple_repeat Simple_repeat 6 31 0 191 282 154 36 chr1 211025874 211025984 -71167680 + L2 LINE L2 3142 3264 -8 240 307 13 13 chr1 211026767 211026842 -71166822 + MIR SINE MIR 16 90 -118 441 338 19 46 chr1 211027132 211027370 -71166294 + MIR SINE MIR 6 236 -26 916 231 190 17 chr1 211027964 211028311 -71165353 + L1MC5 LINE L1 7503 7909 -52 211 234 78 16 chr1 211028555 211028619 -71165045 - MIR SINE MIR -100 108 41 435 315 122 90 chr1 211028890 211030653 -71163011 + L2 LINE L2 1362 3187 -85 189 0 0 0 chr1 211030653 211030674 -71162990 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 435 315 122 90 chr1 211030674 211030722 -71162942 + L2 LINE L2 3187 3232 -40 232 303 13 13 chr1 211030765 211030841 -71162823 + L2 LINE L2 3187 3262 -10 281 301 133 30 chr1 211030929 211031095 -71162569 + MIR SINE MIR 24 206 -56 231 219 126 87 chr1 211032607 211032795 -71160869 - MIR SINE MIR -63 145 4 207 0 0 0 chr1 211033658 211033681 -71159983 + (A)n Simple_repeat Simple_repeat 1 23 0 322 303 87 96 chr1 211035839 211036265 -71157399 - L2 LINE L2 -8 3264 2843 253 311 156 53 chr1 211036299 211037047 -71156617 - L2 LINE L2 -557 2757 1933 640 238 8 0 chr1 211037103 211037229 -71156435 - MER5A DNA MER1_type 0 189 63 606 219 0 16 chr1 211037230 211037353 -71156311 - FLAM_A SINE Alu -2 140 20 364 259 25 0 chr1 211037357 211037438 -71156226 - MER5A DNA MER1_type -106 83 1 281 252 159 19 chr1 211037686 211037793 -71155871 + L2 LINE L2 3151 3272 0 264 355 54 0 chr1 211038263 211038356 -71155308 + L2 LINE L2 3143 3240 -32 246 81 0 0 chr1 211038372 211038409 -71155255 + (TC)n Simple_repeat Simple_repeat 1 37 0 204 194 14 28 chr1 211038421 211038493 -71155171 + GA-rich Low_complexity Low_complexity 3 73 0 1961 239 87 24 chr1 211038510 211039087 -71154577 + MLT1E2 LTR MaLR 14 626 0 471 63 0 0 chr1 211039274 211039337 -71154327 + (CA)n Simple_repeat Simple_repeat 1 63 0 779 256 10 20 chr1 211040038 211040233 -71153431 + MIR SINE MIR 21 213 -49 353 328 8 23 chr1 211040296 211040427 -71153237 + L2 LINE L2 3082 3210 -62 463 319 7 0 chr1 211040520 211040661 -71153003 + MIR3 SINE MIR 67 208 0 892 284 96 62 chr1 211040760 211041291 -71152373 + MLT1H LTR MaLR 1 549 0 7739 197 11 9 chr1 211041443 211042031 -71151633 + L1PA15 LINE L1 3758 4343 -1822 2296 107 3 0 chr1 211042031 211042329 -71151335 - AluSg SINE Alu -10 300 2 7739 197 11 9 chr1 211042329 211044173 -71149491 + L1PA15 LINE L1 4343 6165 0 2208 114 0 3 chr1 211044552 211044851 -71148813 + AluSx SINE Alu 1 298 -14 737 198 0 0 chr1 211045532 211045648 -71148016 - FLAM_A SINE Alu -17 116 1 183 309 40 79 chr1 211046045 211046171 -71147493 - L2 LINE L2 0 3313 3193 240 35 0 0 chr1 211046338 211046367 -71147297 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1791 139 34 4 chr1 211046411 211046677 -71146987 - AluSx SINE Alu -38 274 1 1439 230 67 67 chr1 211046737 211047277 -71146387 - MLT1H LTR MaLR -9 540 1 302 241 35 11 chr1 211047689 211047776 -71145888 + HsTC2 DNA Tc2 3 91 -1807 689 244 211 0 chr1 211048323 211048532 -71145132 + MIR SINE MIR 10 262 0 258 353 35 26 chr1 211050866 211050982 -71142682 - MIR SINE MIR -69 139 23 4628 105 84 1 chr1 211051852 211052569 -71141095 + L1PA16 LINE L1 5382 6157 -9 183 326 23 70 chr1 211053054 211053140 -71140524 - L2 LINE L2 0 3272 3191 214 309 66 29 chr1 211053914 211054050 -71139614 - L2 LINE L2 -2 3311 3171 1646 194 92 12 chr1 211055098 211055548 -71138116 - MLT2B1 LTR ERVL -8 546 13 1724 181 0 19 chr1 211056001 211056316 -71137348 - AluJb SINE Alu -3 309 1 2241 116 3 0 chr1 211056492 211056793 -71136871 - AluSq SINE Alu -11 302 1 1968 106 4 4 chr1 211057285 211057560 -71136104 + AluSq SINE Alu 33 307 -6 568 269 105 42 chr1 211058026 211058071 -71135593 - MIR SINE MIR -3 259 218 2219 64 8 0 chr1 211058071 211058368 -71135296 - AluY SINE Alu 0 314 16 568 269 105 42 chr1 211058368 211058559 -71135105 - MIR SINE MIR -44 218 7 206 303 0 28 chr1 211059406 211059515 -71134149 + T-rich Low_complexity Low_complexity 3 108 0 503 243 29 15 chr1 211060120 211060256 -71133408 + MIR SINE MIR 53 190 -72 270 167 0 0 chr1 211060261 211060303 -71133361 - LTR67 LTR ERVL -5 552 511 2592 177 15 7 chr1 211060522 211060980 -71132684 + LTR53 LTR ERVL 58 519 0 313 242 145 16 chr1 211062364 211062488 -71131176 - MIR SINE MIR -9 253 114 2304 119 0 0 chr1 211063549 211063861 -71129803 - AluSx SINE Alu 0 312 1 280 254 39 55 chr1 211064212 211064393 -71129271 - L1ME4a LINE L1 0 6121 5944 230 343 0 0 chr1 211064399 211064466 -71129198 + L2 LINE L2 2993 3059 -213 610 330 64 27 chr1 211064478 211064808 -71128856 + L2 LINE L2 2972 3313 0 707 292 148 34 chr1 211065466 211065884 -71127780 - MLT1L LTR MaLR -4 611 146 712 276 58 11 chr1 211065884 211066058 -71127606 - MER5A DNA MER1_type -2 187 6 263 294 96 20 chr1 211066061 211066207 -71127457 - MLT1L LTR MaLR -458 157 1 1220 202 107 35 chr1 211066309 211066496 -71127168 + MER2 DNA MER2_type 6 227 -118 2014 150 3 3 chr1 211066496 211066803 -71126861 - AluSx SINE Alu -5 307 1 1220 202 107 35 chr1 211066803 211066932 -71126732 + MER2 DNA MER2_type 227 345 0 521 291 22 16 chr1 211066940 211067122 -71126542 - MIR SINE MIR -74 188 6 197 138 0 0 chr1 211067129 211067158 -71126506 + MIR SINE MIR 47 75 -187 234 325 108 0 chr1 211067277 211067434 -71126230 + MIR SINE MIR 73 246 -16 610 292 43 53 chr1 211067958 211068239 -71125425 + L2 LINE L2 3035 3312 -1 24 0 0 0 chr1 211069167 211069191 -71124473 + AT_rich Low_complexity Low_complexity 1 24 0 1378 182 111 4 chr1 211069826 211070106 -71123558 - AluJb SINE Alu -2 310 1 225 174 0 0 chr1 211071220 211071266 -71122398 + LTR66 LTR ERVL 394 439 -171 237 152 0 0 chr1 211071284 211071330 -71122334 + LTR66 LTR ERVL 394 439 -171 324 258 0 43 chr1 211071364 211071457 -71122207 - L1MC4 LINE L1 -1339 6703 6615 316 269 0 43 chr1 211071377 211071470 -71122194 + L1MC4 LINE L1 6615 6703 -1339 * 345 241 72 0 chr1 211071572 211071655 -71122009 - L2 LINE L2 0 3313 3225 476 285 87 72 chr1 211071658 211071935 -71121729 - MLT1K LTR MaLR -31 557 277 2209 256 111 25 chr1 211071942 211072674 -71120990 + MER69 DNA AcHobo 239 1033 -1493 1210 193 47 145 chr1 211072705 211073072 -71120592 - MLT1C LTR MaLR 0 429 153 2291 63 0 7 chr1 211073072 211073404 -71120260 + AluY SINE Alu 1 330 0 1210 193 47 145 chr1 211073404 211073540 -71120124 - MLT1C LTR MaLR -276 153 5 1518 210 43 124 chr1 211073544 211074100 -71119564 - MLT1F LTR MaLR -31 511 1 685 178 47 0 chr1 211074230 211074356 -71119308 - MER57A LTR ERV1 0 403 272 1624 81 0 27 chr1 211074356 211074579 -71119085 + MLT2A2 LTR ERVL 1 217 -236 414 0 0 0 chr1 211074579 211074625 -71119039 + (TA)n Simple_repeat Simple_repeat 2 47 0 335 25 0 0 chr1 211074625 211074665 -71118999 + MLT2A2 LTR ERVL 414 453 0 1249 160 86 31 chr1 211074668 211074924 -71118740 - MER57A LTR ERV1 -130 273 4 2479 80 0 0 chr1 211074924 211075235 -71118429 - AluSx SINE Alu -1 311 1 412 190 0 25 chr1 211075254 211075333 -71118331 - MER57A-int LTR ERV1 -24 7513 7437 892 204 201 22 chr1 211075335 211075649 -71118015 - LTR54B LTR ERV1 -112 386 17 2184 125 3 0 chr1 211076766 211077061 -71116603 + AluSp SINE Alu 1 296 -17 1144 208 33 8 chr1 211077530 211077770 -71115894 + MIR SINE MIR 15 260 -2 30 27 0 0 chr1 211078060 211078097 -71115567 + AT_rich Low_complexity Low_complexity 1 37 0 377 269 35 47 chr1 211079084 211079255 -71114409 + HAL1 LINE L1 2225 2393 -114 * 913 84 0 14 chr1 211079254 211079402 -71114262 + L1PA10 LINE L1 6032 6172 0 2013 143 0 0 chr1 211080805 211081105 -71112559 + AluSq SINE Alu 1 300 -13 205 393 104 12 chr1 211081158 211081331 -71112333 - MER5A DNA MER1_type 0 189 1 249 318 87 40 chr1 211082317 211082490 -71111174 - L2 LINE L2 -643 2671 2491 288 120 0 0 chr1 211082597 211082647 -71111017 + (TC)n Simple_repeat Simple_repeat 2 51 0 279 54 0 0 chr1 211082647 211082684 -71110980 + (CA)n Simple_repeat Simple_repeat 1 37 0 286 280 13 0 chr1 211082730 211082805 -71110859 + L2 LINE L2 3238 3313 0 378 0 0 0 chr1 211084253 211084295 -71109369 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2267 87 3 0 chr1 211084310 211084598 -71109066 - AluSq SINE Alu -24 289 1 1558 187 16 10 chr1 211085231 211085541 -71108123 - MER33 DNA MER1_type -12 312 1 741 241 22 31 chr1 211086331 211086559 -71107105 + MER113 DNA MER1_type? 1 226 -295 265 222 16 0 chr1 211086574 211086637 -71107027 + MER113 DNA MER1_type? 458 521 0 392 330 11 17 chr1 211086771 211086947 -71106717 - MER5A DNA MER1_type -14 175 1 587 222 88 65 chr1 211087061 211087277 -71106387 + MLT1E LTR MaLR 67 287 -280 1430 205 112 31 chr1 211087281 211087666 -71105998 - MLT1D LTR MaLR 0 505 90 24 32 0 0 chr1 211087666 211087697 -71105967 + AT_rich Low_complexity Low_complexity 1 31 0 2655 105 6 6 chr1 211087741 211088103 -71105561 + THE1B LTR MaLR 1 362 -2 945 263 40 34 chr1 211088179 211088476 -71105188 + MLT1E LTR MaLR 293 591 -2 314 289 99 13 chr1 211088630 211088782 -71104882 + MIR SINE MIR 85 249 -13 23 54 0 0 chr1 211088813 211088850 -71104814 + AT_rich Low_complexity Low_complexity 1 37 0 593 251 150 5 chr1 211090699 211090886 -71102778 - MIR SINE MIR 0 262 49 6536 56 11 86 chr1 211090931 211091964 -71101700 - SVA Other Other 0 1386 432 581 324 114 16 chr1 211143132 211143518 -71050146 - L2 LINE L2 -511 2803 2380 230 145 16 137 chr1 211143662 211143786 -71049878 + Charlie7 DNA MER1_type 2429 2537 -75 437 261 94 108 chr1 211143821 211144257 -71049407 + MLT1J2 LTR MaLR 1 434 -16 389 288 21 84 chr1 211145712 211145903 -71047761 + MIR SINE MIR 9 187 -75 237 228 35 18 chr1 211146530 211146587 -71047077 - LTR33A LTR ERVL -3 520 463 21 0 0 0 chr1 211147063 211147084 -71046580 + AT_rich Low_complexity Low_complexity 1 21 0 291 202 252 42 chr1 211147121 211147240 -71046424 + LTR45 LTR ERV1 1 144 -381 237 163 23 0 chr1 211147250 211147293 -71046371 + MER5A DNA MER1_type 25 68 -121 657 210 21 14 chr1 211147312 211147455 -71046209 + LTR45 LTR ERV1 382 525 0 3492 103 0 0 chr1 211147814 211148268 -71045396 + MER61E LTR ERV1 1 454 -115 1002 198 181 75 chr1 211148668 211149083 -71044581 - L1MC4 LINE L1 -124 7918 7460 439 299 134 37 chr1 211149297 211149484 -71044180 - MIR SINE MIR -50 212 8 22 0 0 0 chr1 211149591 211149613 -71044051 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 211149659 211149688 -71043976 + AT_rich Low_complexity Low_complexity 1 29 0 2014 135 0 0 chr1 211150221 211150556 -71043108 - AluSx SINE Alu 0 335 1 1382 196 29 0 chr1 211150562 211150837 -71042827 - Charlie4a DNA MER1_type -191 317 35 2271 101 0 0 chr1 211150838 211151135 -71042529 - AluSg SINE Alu -13 297 1 1320 159 14 5 chr1 211151236 211151450 -71042214 - L1PB4 LINE L1 -6 6150 5935 210 354 89 6 chr1 211151552 211151710 -71041954 + L2 LINE L2 1851 2021 -1293 264 323 133 6 chr1 211151737 211151895 -71041769 - MER5B DNA MER1_type 0 178 1 2297 116 0 0 chr1 211151998 211152299 -71041365 - AluSx SINE Alu -11 301 1 1874 142 32 26 chr1 211152503 211152813 -71040851 - AluJb SINE Alu 0 312 1 221 302 172 65 chr1 211153079 211153093 -71040571 - L3 LINE CR1 -119 1458 1447 846 193 122 39 chr1 211153093 211153147 -71040517 + ORSL DNA AcHobo 1 49 -226 1907 100 4 0 chr1 211153147 211153397 -71040267 + AluY SINE Alu 45 295 -16 846 193 122 39 chr1 211153397 211153596 -71040068 + ORSL DNA AcHobo 49 275 0 221 302 172 65 chr1 211153596 211153750 -71039914 - L3 LINE CR1 -130 1447 1272 567 262 146 12 chr1 211153767 211153931 -71039733 + MER5A DNA MER1_type 4 189 0 821 259 108 4 chr1 211153944 211154176 -71039488 - MIR SINE MIR 0 262 7 282 272 96 7 chr1 211154724 211154860 -71038804 - L3 LINE CR1 -313 1264 1117 2005 57 28 0 chr1 211155609 211155857 -71037807 - L1PA13 LINE L1 0 6163 5909 2065 103 4 0 chr1 211155857 211156138 -71037526 + L1PA13 LINE L1 5648 5929 -239 240 244 0 146 chr1 211157498 211157621 -71036043 - MER102b DNA MER1_type -4 337 233 349 257 79 10 chr1 211158096 211158197 -71035467 + L2 LINE L2 3165 3272 0 614 230 75 6 chr1 211159476 211159598 -71034066 - MIR SINE MIR -15 247 108 1537 119 33 20 chr1 211159598 211159842 -71033822 + L1PA8 LINE L1 5924 6170 -2 614 230 75 6 chr1 211159842 211159893 -71033771 - MIR SINE MIR -154 108 62 4344 153 26 8 chr1 211159894 211160929 -71032735 + L1MA8 LINE L1 4579 5629 -683 3295 162 49 16 chr1 211161031 211161659 -71032005 + L1MA8 LINE L1 5641 6289 -2 806 153 65 0 chr1 211161796 211161920 -71031744 - AluSq/x SINE Alu -180 133 2 1305 163 87 73 chr1 211162449 211162749 -71030915 + AluJo SINE Alu 1 304 -8 344 176 0 14 chr1 211162901 211162975 -71030689 + CT-rich Low_complexity Low_complexity 4 76 0 1780 156 60 0 chr1 211162977 211163260 -71030404 - AluSx SINE Alu -8 304 5 256 264 74 134 chr1 211163490 211163922 -71029742 + L3 LINE CR1 1157 1562 -15 1230 140 20 113 chr1 211164622 211164839 -71028825 + L1MB8 LINE L1 5894 6130 -48 1271 150 100 133 chr1 211164839 211165199 -71028465 - MER7A DNA MER2_type 0 346 1 1230 140 20 113 chr1 211165199 211165221 -71028443 + L1MB8 LINE L1 6130 6103 -75 1127 164 186 74 chr1 211165221 211165490 -71028174 + AluJo SINE Alu 1 299 -3 1230 140 20 113 chr1 211165490 211165549 -71028115 + L1MB8 LINE L1 6102 6165 -13 600 231 75 38 chr1 211165549 211165735 -71027929 - L2 LINE L2 -21 3292 3100 261 204 23 11 chr1 211165772 211165860 -71027804 + (TG)n Simple_repeat Simple_repeat 2 90 0 541 306 120 16 chr1 211165873 211166115 -71027549 - L2 LINE L2 -241 3072 2806 330 356 0 10 chr1 211166411 211166512 -71027152 - MIR3 SINE MIR -107 101 2 5916 74 31 22 chr1 211166863 211168007 -71025657 + SVA Other Other 1 868 -520 995 270 84 18 chr1 211168717 211169110 -71024554 - L1ME4a LINE L1 -190 5931 5513 366 275 28 51 chr1 211169632 211169810 -71023854 + L2 LINE L2 3127 3300 -13 2743 149 40 13 chr1 211170043 211170498 -71023166 - MER7C DNA MER2_type -1 601 135 589 274 62 34 chr1 211170798 211171006 -71022658 + MIR SINE MIR 49 262 0 274 375 25 67 chr1 211171004 211171203 -71022461 + L2 LINE L2 3001 3186 -86 * 2205 119 0 0 chr1 211171203 211171498 -71022166 - AluSx SINE Alu -17 295 1 274 375 25 67 chr1 211171498 211171581 -71022083 + L2 LINE L2 3186 3271 -1 2276 85 3 0 chr1 211172263 211172580 -71021084 + AluSp SINE Alu 1 318 0 530 191 219 51 chr1 211172940 211173118 -71020546 - MER63A DNA MER1_type -2 208 1 2098 122 20 0 chr1 211174411 211174714 -71018950 + AluSx SINE Alu 1 309 -3 506 290 55 30 chr1 211174914 211175114 -71018550 + LTR67 LTR ERVL 353 557 0 295 357 45 0 chr1 211175125 211175237 -71018427 - MIR SINE MIR -125 137 21 388 168 84 42 chr1 211175813 211175908 -71017756 + MLT1J LTR MaLR 313 470 -35 2936 163 25 10 chr1 211176023 211176503 -71017161 + LTR42 LTR ERVL 9 495 0 515 256 35 55 chr1 211176535 211176824 -71016840 - L1MEd LINE L1 -5014 1105 823 1374 169 22 37 chr1 211176828 211177161 -71016503 + MLT1A1 LTR MaLR 6 365 0 316 256 90 39 chr1 211177161 211177317 -71016347 - L1MEd LINE L1 -5291 828 665 661 222 16 32 chr1 211177633 211177818 -71015846 - MER53 DNA DNA 0 189 8 218 240 19 65 chr1 211177946 211178100 -71015564 + T-rich Low_complexity Low_complexity 2 148 0 1890 212 74 15 chr1 211178659 211179121 -71014543 - Tigger3b DNA MER2_type -742 489 1 222 260 0 55 chr1 211179284 211179357 -71014307 + MIR SINE MIR 73 141 -121 397 371 18 12 chr1 211180186 211180356 -71013308 - L2 LINE L2 0 3272 3102 1792 117 57 30 chr1 211182524 211182823 -71010841 + AluSc SINE Alu 3 309 0 1720 143 71 75 chr1 211184010 211184152 -71009512 + L1MB7 LINE L1 5761 5902 -282 1527 198 18 11 chr1 211184152 211184435 -71009229 + AluJb SINE Alu 1 285 -27 234 0 0 0 chr1 211184435 211184461 -71009203 + (CA)n Simple_repeat Simple_repeat 2 27 0 1720 143 71 75 chr1 211184461 211184523 -71009141 + L1MB7 LINE L1 5901 5962 -222 1974 108 87 0 chr1 211184523 211184810 -71008854 + AluSp SINE Alu 1 312 -1 1720 143 71 75 chr1 211184810 211185028 -71008636 + L1MB7 LINE L1 5962 6183 -1 234 317 57 24 chr1 211185678 211185801 -71007863 + MLT1K LTR MaLR 65 191 -397 297 0 0 0 chr1 211186250 211186283 -71007381 + (CA)n Simple_repeat Simple_repeat 1 33 0 318 215 62 0 chr1 211186539 211186604 -71007060 + LTR16B LTR ERVL 394 462 -2 208 147 0 0 chr1 211186888 211186922 -71006742 + (T)n Simple_repeat Simple_repeat 1 34 0 402 205 129 144 chr1 211186927 211187190 -71006474 + MIR SINE MIR 3 261 -1 331 305 141 62 chr1 211187776 211188307 -71005357 - L1M2 LINE L1 -5525 1324 752 2235 57 4 0 chr1 211188936 211189265 -71004399 - AluSq SINE Alu 0 330 1 984 244 23 5 chr1 211190605 211190826 -71002838 - MIR SINE MIR -22 240 16 187 271 17 0 chr1 211190861 211190920 -71002744 - L2 LINE L2 -963 2351 2292 251 325 12 0 chr1 211191694 211191774 -71001890 - MIR SINE MIR -180 82 2 1033 211 139 0 chr1 211192282 211192491 -71001173 - MER8 DNA MER2_type 0 239 2 254 289 41 10 chr1 211193743 211193840 -70999824 + MIR SINE MIR 124 223 -39 186 43 0 0 chr1 211194644 211194667 -70998997 + (A)n Simple_repeat Simple_repeat 1 23 0 411 280 26 83 chr1 211195100 211195231 -70998433 + MIR3 SINE MIR 4 122 -86 2253 104 0 3 chr1 211195231 211195528 -70998136 + AluSc SINE Alu 1 296 -13 411 280 26 83 chr1 211195528 211195589 -70998075 + MIR3 SINE MIR 122 185 -23 229 290 14 0 chr1 211195669 211195738 -70997926 + L2 LINE L2 2662 2731 -583 330 243 235 7 chr1 211195784 211195920 -70997744 + MER5A DNA MER1_type 16 182 -7 321 288 94 35 chr1 211196446 211196616 -70997048 - MIR SINE MIR -10 252 73 2084 114 24 0 chr1 211196682 211196971 -70996693 - AluSx SINE Alu -11 301 6 22 35 0 0 chr1 211198036 211198065 -70995599 + AT_rich Low_complexity Low_complexity 1 29 0 934 169 0 0 chr1 211198068 211198198 -70995466 + FLAM_A SINE Alu 4 133 0 2349 114 0 0 chr1 211198602 211198909 -70994755 + AluJb SINE Alu 1 307 -5 361 93 0 0 chr1 211199175 211199229 -70994435 - Alu SINE Alu 0 300 247 301 237 216 36 chr1 211199843 211199982 -70993682 - MER5A DNA MER1_type -1 188 25 267 186 23 0 chr1 211200267 211200310 -70993354 + Alu SINE Alu 1 44 -259 263 283 94 22 chr1 211200969 211201107 -70992557 - MIR SINE MIR -50 212 65 2027 133 10 10 chr1 211201144 211201452 -70992212 - AluSx SINE Alu -4 308 1 2280 108 0 3 chr1 211202172 211202479 -70991185 + AluSq SINE Alu 1 306 -7 194 236 100 73 chr1 211202543 211202653 -70991011 + MIR SINE MIR 102 214 -48 2240 111 10 0 chr1 211203856 211204162 -70989502 - AluY SINE Alu -2 309 1 230 346 135 10 chr1 211204192 211204296 -70989368 - L2 LINE L2 -33 3239 3123 2464 60 0 47 chr1 211204619 211204937 -70988727 + AluY SINE Alu 1 303 -8 628 258 75 0 chr1 211205063 211205222 -70988442 + MIR SINE MIR 23 193 -69 362 294 67 67 chr1 211205358 211205685 -70987979 - L2 LINE L2 -1372 1942 1616 1830 166 0 16 chr1 211205697 211206004 -70987660 + AluJo SINE Alu 1 302 -10 229 219 188 0 chr1 211206117 211206181 -70987483 + Tigger5 DNA MER2_type 2242 2317 -6 2176 123 0 3 chr1 211206281 211206582 -70987082 + AluSx SINE Alu 1 300 -12 202 195 0 0 chr1 211207035 211207076 -70986588 + L2 LINE L2 2694 2734 -580 788 314 48 4 chr1 211207764 211208012 -70985652 - MIR SINE MIR 0 262 4 1835 169 3 10 chr1 211208245 211208553 -70985111 - AluJb SINE Alu -6 306 1 291 320 108 54 chr1 211209527 211209861 -70983803 - L2 LINE L2 -1899 1415 1064 2186 84 0 0 chr1 211209931 211210194 -70983470 + AluSg SINE Alu 35 297 -13 331 278 78 0 chr1 211211096 211211211 -70982453 - L2 LINE L2 -11 3261 3138 1734 167 13 20 chr1 211212628 211212928 -70980736 - AluJo SINE Alu -14 298 1 239 279 29 29 chr1 211214131 211214199 -70979465 + L2 LINE L2 3155 3222 -50 3854 197 50 27 chr1 211214377 211215179 -70978485 - MER21B LTR ERV1 -1 862 43 429 211 0 0 chr1 211215182 211215253 -70978411 - MER21B LTR ERV1 -774 89 19 338 230 70 10 chr1 211215251 211215351 -70978313 - MER21B LTR ERV1 -757 106 1 * 2447 111 111 8 chr1 211216361 211216749 -70976915 - MSTA LTR MaLR 0 428 1 223 313 62 0 chr1 211217392 211217472 -70976192 + MIR SINE MIR 158 242 -20 1163 113 0 12 chr1 211218744 211218904 -70974760 - FRAM SINE Alu -21 155 1 659 259 77 24 chr1 211219959 211220206 -70973458 + L1MC4a LINE L1 5655 5914 -1894 1382 197 149 64 chr1 211220237 211220384 -70973280 - Charlie2 DNA MER1_type -467 2395 2262 2407 85 0 0 chr1 211220384 211220689 -70972975 + AluY SINE Alu 1 305 -6 1382 197 149 64 chr1 211220689 211221023 -70972641 - Charlie2 DNA MER1_type -600 2262 1873 687 263 22 36 chr1 211221107 211221331 -70972333 - Charlie2 DNA MER1_type -2641 221 1 2150 115 55 30 chr1 211222668 211222998 -70970666 - MER44D DNA MER2_type -1 608 1 393 228 141 68 chr1 211223211 211223474 -70970190 - L1MEd LINE L1 -4876 1243 962 342 306 85 37 chr1 211223618 211223994 -70969670 - L1MEd LINE L1 -5349 770 377 232 380 0 0 chr1 211224018 211224089 -70969575 - L1MEd LINE L1 -5781 338 268 2466 78 3 0 chr1 211226396 211226703 -70966961 + AluSc SINE Alu 1 308 -1 2346 54 32 0 chr1 211226982 211227262 -70966402 + AluY SINE Alu 2 290 -21 2671 94 53 11 chr1 211228496 211228856 -70964808 - THE1C LTR MaLR 0 375 1 363 401 38 14 chr1 211229105 211229394 -70964270 - L2 LINE L2 -213 3100 2805 703 174 16 25 chr1 211229865 211229986 -70963678 - AluSq/x SINE Alu -182 131 12 296 331 48 16 chr1 211230019 211230143 -70963521 - L1MEd LINE L1 -5398 721 594 382 291 101 105 chr1 211230201 211230638 -70963026 - L1MEd LINE L1 -5653 466 32 819 160 0 0 chr1 211230933 211231058 -70962606 + FLAM_C SINE Alu 9 133 -10 2487 113 9 12 chr1 211231644 211231981 -70961683 - MER1B DNA MER1_type 0 337 2 999 189 22 22 chr1 211232038 211232223 -70961441 - MLT1A2 LTR MaLR -189 185 1 2122 126 0 26 chr1 211233072 211233382 -70960282 - AluSx SINE Alu -10 302 1 2220 136 116 0 chr1 211233382 211233780 -70959884 - L1 LINE L1 -2403 3743 3300 1771 58 44 174 chr1 211234355 211234699 -70958965 - AluSx SINE Alu -3 299 1 287 291 0 12 chr1 211234762 211234848 -70958816 - MIR SINE MIR -17 245 161 23 33 0 0 chr1 211235351 211235381 -70958283 + GC_rich Low_complexity Low_complexity 1 30 0 257 285 161 8 chr1 211235970 211236100 -70957564 - L2 LINE L2 -639 2675 2526 372 287 71 87 chr1 211236107 211236167 -70957497 + MIR SINE MIR 9 68 -194 2385 64 7 0 chr1 211236167 211236465 -70957199 - AluSc SINE Alu -9 300 1 372 287 71 87 chr1 211236465 211236658 -70957006 + MIR SINE MIR 68 258 -4 313 261 98 82 chr1 211236671 211236878 -70956786 - L2 LINE L2 -843 2471 2256 2287 80 3 0 chr1 211236878 211237178 -70956486 + AluY SINE Alu 1 301 -10 313 261 98 82 chr1 211237178 211237276 -70956388 - L2 LINE L2 -1058 2256 2161 356 252 133 40 chr1 211237931 211238082 -70955582 + MIR SINE MIR 46 210 -52 299 162 191 0 chr1 211238120 211238188 -70955476 - L1ME4a LINE L1 -71 6050 5970 23 0 0 0 chr1 211239021 211239044 -70954620 + AT_rich Low_complexity Low_complexity 1 23 0 816 217 7 0 chr1 211239685 211239828 -70953836 - AluJo/FRAM SINE Alu -32 280 137 1901 118 38 14 chr1 211239831 211240119 -70953545 - AluSx SINE Alu -17 295 1 417 259 46 19 chr1 211240292 211240400 -70953264 - AluJo SINE Alu -85 217 107 1773 117 99 3 chr1 211240401 211240684 -70952980 - AluSg SINE Alu 0 310 1 1132 103 0 0 chr1 211240684 211240830 -70952834 - AluSq/x SINE Alu -166 146 1 275 259 0 0 chr1 211241020 211241078 -70952586 + MIR3 SINE MIR 124 181 -27 494 183 70 0 chr1 211241162 211241277 -70952387 - L1ME LINE L1 -4559 1521 1399 3723 196 69 24 chr1 211241294 211242103 -70951561 - MER21B LTR ERV1 0 863 18 2165 91 14 0 chr1 211242104 211242400 -70951264 - AluSp SINE Alu -13 300 1 2197 239 88 77 chr1 211242426 211243220 -70950444 - L1ME LINE L1 -4700 1380 560 218 56 28 0 chr1 211243220 211243256 -70950408 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2197 239 88 77 chr1 211243256 211243813 -70949851 - L1ME LINE L1 -5520 560 11 630 279 72 57 chr1 211243883 211244101 -70949563 + L2 LINE L2 2840 3053 -260 949 195 73 5 chr1 211244101 211244306 -70949358 + MER20 DNA MER1_type 1 219 0 630 279 72 57 chr1 211244306 211244461 -70949203 + L2 LINE L2 3053 3313 0 2524 159 19 10 chr1 211244523 211244938 -70948726 - MSTA LTR MaLR -2 426 8 481 229 149 28 chr1 211245111 211245360 -70948304 - L1MC5 LINE L1 -74 7887 7609 538 255 106 0 chr1 211245363 211245524 -70948140 + MER20 DNA MER1_type 42 219 0 323 256 78 28 chr1 211245549 211245729 -70947935 - L1MC/D LINE L1 -2365 5443 5255 332 85 0 0 chr1 211246135 211246182 -70947482 + Alu SINE Alu 250 296 -6 1244 171 18 18 chr1 211246183 211246405 -70947259 + AluJo SINE Alu 6 227 -85 317 253 0 11 chr1 211246763 211246850 -70946814 - MER46C DNA MER2_type -8 330 245 320 250 25 58 chr1 211246912 211247032 -70946632 + L1M4 LINE L1 3874 3989 -2157 304 214 165 0 chr1 211247065 211247168 -70946496 + MER5C DNA MER1_type 6 125 -199 205 244 0 0 chr1 211247190 211247231 -70946433 + MER5C DNA MER1_type 284 324 0 319 254 0 0 chr1 211247843 211247910 -70945754 + MER6B DNA MER2_type 54 120 -156 * 320 193 0 0 chr1 211247907 211247964 -70945700 - MER6B DNA MER2_type -219 57 1 2051 130 7 0 chr1 211248083 211248368 -70945296 - AluSx SINE Alu -25 287 1 2172 83 10 3 chr1 211251998 211252288 -70941376 - AluY SINE Alu -17 294 3 431 247 0 0 chr1 211252554 211252639 -70941025 + MER58A DNA MER1_type 5 89 -18 683 194 0 8 chr1 211252740 211252864 -70940800 + MER58A DNA MER1_type 102 224 0 2151 102 24 0 chr1 211254751 211255044 -70938620 - AluSg SINE Alu -8 302 3 529 277 68 68 chr1 211255678 211255913 -70937751 - MIR SINE MIR -21 241 7 22 88 0 0 chr1 211256256 211256313 -70937351 + AT_rich Low_complexity Low_complexity 1 57 0 205 189 0 0 chr1 211256637 211256674 -70936990 + CT-rich Low_complexity Low_complexity 2 38 0 268 343 176 19 chr1 211256915 211257279 -70936385 - L3 LINE CR1 -221 1356 936 2184 123 0 0 chr1 211260253 211260554 -70933110 - AluSx SINE Alu -11 301 1 821 154 45 45 chr1 211260857 211261013 -70932651 - MER21B LTR ERV1 -707 156 1 611 236 50 11 chr1 211261015 211261214 -70932450 + L1ME2 LINE L1 5787 5992 -193 22 0 0 0 chr1 211261291 211261313 -70932351 + AT_rich Low_complexity Low_complexity 1 22 0 1778 103 16 8 chr1 211261372 211261625 -70932039 - AluSq SINE Alu -16 297 43 463 153 0 0 chr1 211261993 211262065 -70931599 + AluS SINE Alu 1 72 -241 297 298 0 0 chr1 211262116 211262294 -70931370 + (TCCGG)n Simple_repeat Simple_repeat 3 180 0 351 260 0 0 chr1 211262334 211262484 -70931180 + (GTCTG)n Simple_repeat Simple_repeat 2 151 0 1598 140 53 4 chr1 211262485 211262750 -70930914 - AluSq SINE Alu -35 278 1 385 299 78 31 chr1 211262805 211263522 -70930142 + L1M4 LINE L1 4228 5015 -1131 21 0 0 0 chr1 211263559 211263580 -70930084 + AT_rich Low_complexity Low_complexity 1 21 0 441 69 0 0 chr1 211263692 211263750 -70929914 + AluS SINE Alu 45 102 -211 1613 137 4 0 chr1 211263750 211263983 -70929681 - AluSp SINE Alu -79 234 1 1770 172 0 7 chr1 211264836 211265133 -70928531 - AluJb SINE Alu -17 295 1 3550 209 70 14 chr1 211265315 211266224 -70927440 + L1MC3 LINE L1 6370 7329 -456 210 147 0 0 chr1 211266799 211266833 -70926831 + (ATG)n Simple_repeat Simple_repeat 1 34 0 416 219 195 8 chr1 211267155 211267278 -70926386 + MER5A DNA MER1_type 41 186 -3 252 273 13 13 chr1 211269571 211269648 -70924016 - MIR SINE MIR -30 232 156 225 311 84 42 chr1 211270215 211270334 -70923330 + MIR SINE MIR 19 142 -66 684 211 64 0 chr1 211270337 211270493 -70923171 + MIR SINE MIR 97 262 0 1025 147 53 32 chr1 211270501 211270691 -70922973 - MER46A DNA MER2_type 0 236 43 1584 143 12 0 chr1 211271606 211271851 -70921813 - AluSx SINE Alu -15 297 50 2477 44 7 0 chr1 211273386 211273682 -70919982 + AluY SINE Alu 1 298 -13 251 333 10 0 chr1 211374894 211374996 -70818668 - L1 LINE L1 -2437 3709 3607 1702 163 38 7 chr1 211376017 211376305 -70817359 - AluJb SINE Alu -14 298 2 2589 135 18 20 chr1 211378304 211378667 -70814997 - L1PB1 LINE L1 -2 6149 5786 180 0 0 0 chr1 211378667 211378687 -70814977 + (TA)n Simple_repeat Simple_repeat 1 20 0 2589 135 18 20 chr1 211378687 211378776 -70814888 - L1PB1 LINE L1 -365 5786 5698 2458 64 3 3 chr1 211379191 211379486 -70814178 + AluY SINE Alu 1 295 -16 2046 97 65 7 chr1 211379621 211379900 -70813764 + AluSp SINE Alu 3 297 -16 2214 98 0 3 chr1 211380133 211380418 -70813246 - AluSx SINE Alu 0 312 29 331 119 0 60 chr1 211380419 211380486 -70813178 - AluSg/x SINE Alu -103 199 137 2065 122 17 3 chr1 211380856 211381144 -70812520 + AluSx SINE Alu 5 296 -16 2127 113 7 3 chr1 211381776 211382078 -70811586 - AluSq SINE Alu -10 303 1 1015 115 0 0 chr1 211382206 211382336 -70811328 + AluSq/x SINE Alu 1 130 -182 297 170 0 19 chr1 211382436 211382489 -70811175 + AluSc SINE Alu 117 168 -131 462 125 0 0 chr1 211382489 211382609 -70811055 + AluS SINE Alu 220 339 0 3535 162 54 37 chr1 211382610 211383387 -70810277 - L1MC1 LINE L1 -20 6313 5524 2117 76 45 7 chr1 211385076 211385364 -70808300 + AluY SINE Alu 1 299 -12 434 213 0 0 chr1 211385818 211385898 -70807766 - AluS SINE Alu -232 80 1 226 284 0 15 chr1 211387195 211387262 -70806402 - MIR3 SINE MIR -24 184 119 317 329 50 7 chr1 211387314 211387454 -70806210 + L2 LINE L2 3168 3313 0 2322 87 37 0 chr1 211388031 211388331 -70805333 - AluSp SINE Alu -2 311 1 327 285 53 57 chr1 211388525 211388580 -70805084 - L2 LINE L2 -12 3301 3247 620 259 95 0 chr1 211388580 211388812 -70804852 - MER112 DNA MER1_type -1 255 2 327 285 53 57 chr1 211388812 211388984 -70804680 - L2 LINE L2 -66 3247 3075 1933 174 148 16 chr1 211390021 211390459 -70803205 + LTR54B LTR ERV1 1 496 -2 578 175 40 24 chr1 211391480 211391606 -70802058 - MER58B DNA MER1_type -3 338 211 2124 124 7 0 chr1 211392221 211392519 -70801145 + AluSx SINE Alu 3 302 -10 3506 230 127 47 chr1 211392788 211394199 -70799465 - L2 LINE L2 -1 3312 1759 845 228 0 12 chr1 211394199 211394366 -70799298 - FRAM SINE Alu -1 165 1 3506 230 127 47 chr1 211394366 211394489 -70799175 - L2 LINE L2 -1554 1759 1647 253 286 54 116 chr1 211394780 211394927 -70798737 + MER5A DNA MER1_type 2 139 -50 * 445 279 10 10 chr1 211394824 211394928 -70798736 - MER5A DNA MER1_type -25 164 61 281 139 47 0 chr1 211394948 211394991 -70798673 - MER4E LTR ERV1 -69 697 653 234 273 15 15 chr1 211394991 211395057 -70798607 + MER5B DNA MER1_type 112 177 -1 186 71 0 0 chr1 211395589 211395617 -70798047 + (T)n Simple_repeat Simple_repeat 1 28 0 198 71 0 0 chr1 211395666 211395694 -70797970 + (TG)n Simple_repeat Simple_repeat 2 29 0 1549 262 56 9 chr1 211395975 211396511 -70797153 - MER82 DNA MER2_type -8 645 7 3539 73 95 3 chr1 211397117 211397601 -70796063 + MER1A DNA MER1_type 1 533 0 21 0 0 0 chr1 211398026 211398047 -70795617 + AT_rich Low_complexity Low_complexity 1 21 0 1881 174 0 3 chr1 211398522 211398820 -70794844 + AluJb SINE Alu 1 297 -15 821 172 207 6 chr1 211399015 211399189 -70794475 - MER3 DNA MER1_type 0 209 1 4578 104 62 6 chr1 211399953 211400438 -70793226 + L1MA2 LINE L1 5585 6120 -184 2266 91 0 3 chr1 211400438 211400724 -70792940 + AluSc SINE Alu 1 285 -24 4578 104 62 6 chr1 211400724 211400920 -70792744 + L1MA2 LINE L1 6120 6304 0 389 288 25 61 chr1 211400956 211401119 -70792545 - MER91A DNA MER1_type -36 160 4 26 0 0 0 chr1 211401474 211401500 -70792164 + AT_rich Low_complexity Low_complexity 1 26 0 30 59 0 0 chr1 211401788 211401839 -70791825 + AT_rich Low_complexity Low_complexity 1 51 0 2177 98 20 7 chr1 211401980 211402276 -70791388 + AluSc SINE Alu 1 300 -9 234 0 0 0 chr1 211402293 211402319 -70791345 + (GA)n Simple_repeat Simple_repeat 2 27 0 504 72 0 11 chr1 211402351 211402586 -70791078 + AluY SINE Alu 1 286 -23 2496 105 61 114 chr1 211402696 211403332 -70790332 - MER4A LTR ERV1 0 465 1 246 284 14 0 chr1 211404360 211404434 -70789230 + MIR SINE MIR 137 211 -51 2097 127 0 35 chr1 211405082 211405396 -70788268 - AluSx SINE Alu -9 303 1 2306 79 0 31 chr1 211406740 211407058 -70786606 - AluY SINE Alu -3 308 1 2248 107 7 0 chr1 211407058 211407357 -70786307 - AluSx SINE Alu -6 306 6 1195 157 89 4 chr1 211407388 211407623 -70786041 - L1ME1 LINE L1 -117 6049 5795 229 61 0 0 chr1 211407824 211407857 -70785807 - Alu SINE Alu -7 295 263 2103 136 0 3 chr1 211407875 211408176 -70785488 + AluSx SINE Alu 1 300 -12 23 33 0 0 chr1 211408429 211408459 -70785205 + AT_rich Low_complexity Low_complexity 1 30 0 517 262 158 20 chr1 211408484 211408686 -70784978 - MIR SINE MIR -21 241 12 900 241 13 22 chr1 211409221 211409445 -70784219 + MIR SINE MIR 20 241 -21 1516 176 4 0 chr1 211410571 211410816 -70782848 + AluJo SINE Alu 1 246 -66 205 98 20 20 chr1 211410816 211410867 -70782797 + (CAAAAA)n Simple_repeat Simple_repeat 3 53 0 199 161 0 0 chr1 211412181 211412212 -70781452 - L2 LINE L2 -4 3268 3238 446 188 55 47 chr1 211412723 211412851 -70780813 + L1MA9 LINE L1 6149 6277 -35 261 255 223 51 chr1 211412964 211413121 -70780543 - MIR3 SINE MIR -16 192 9 480 234 169 33 chr1 211413700 211413884 -70779780 + MIR SINE MIR 21 229 -33 450 305 119 75 chr1 211414032 211414527 -70779137 - L2 LINE L2 -415 2899 2383 762 118 0 3 chr1 211414534 211414755 -70778909 + AluJb SINE Alu 3 281 -31 464 259 192 67 chr1 211415249 211415473 -70778191 + MIR SINE MIR 4 255 -7 2183 119 0 3 chr1 211416800 211417093 -70776571 + AluSx SINE Alu 1 292 -20 413 298 50 14 chr1 211417661 211417802 -70775862 - MIR3 SINE MIR -2 206 61 228 257 54 40 chr1 211417814 211417888 -70775776 - MIR SINE MIR -64 144 75 2072 114 0 10 chr1 211417932 211418229 -70775435 - AluY SINE Alu -17 294 1 1796 149 62 0 chr1 211419168 211419444 -70774220 - AluSx SINE Alu -19 293 1 2183 119 3 0 chr1 211421367 211421661 -70772003 - AluSq SINE Alu -18 295 1 896 323 157 19 chr1 211422147 211422617 -70771047 - L2 LINE L2 -455 2859 2455 2277 93 0 7 chr1 211422617 211422947 -70770717 + AluY SINE Alu 1 328 0 896 323 157 19 chr1 211422947 211423245 -70770419 - L2 LINE L2 -859 2455 1982 2209 102 0 16 chr1 211423349 211423663 -70770001 - AluSc SINE Alu 0 309 1 2196 90 7 3 chr1 211424313 211424601 -70769063 - AluSc SINE Alu 0 309 21 578 122 10 0 chr1 211424626 211424724 -70768940 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 201 98 39 20 chr1 211424738 211424789 -70768875 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 322 260 99 35 chr1 211424919 211425094 -70768570 - L2 LINE L2 -224 3048 2637 2350 84 3 0 chr1 211425328 211425624 -70768040 + AluSx SINE Alu 1 297 -15 244 306 74 16 chr1 211426581 211426702 -70766962 + L2 LINE L2 2870 2997 -275 230 191 106 32 chr1 211426675 211426769 -70766895 + L2 LINE L2 2637 2737 -577 * 996 92 31 0 chr1 211426848 211426978 -70766686 + AluSx SINE Alu 1 134 -178 1201 153 11 0 chr1 211427252 211427466 -70766198 + AluSx SINE Alu 119 310 0 26 0 0 0 chr1 211427569 211427595 -70766069 + AT_rich Low_complexity Low_complexity 1 26 0 423 211 0 127 chr1 211427886 211428099 -70765565 + L2 LINE L2 3077 3262 -51 207 315 0 0 chr1 211428159 211428213 -70765451 - L2 LINE L2 0 3272 3219 375 263 21 84 chr1 211428310 211428500 -70765164 + Charlie8 DNA MER1_type 54 231 -2186 1789 185 0 3 chr1 211429227 211429530 -70764134 + AluJb SINE Alu 1 302 -10 1793 141 0 111 chr1 211429532 211429865 -70763799 + AluJb SINE Alu 1 296 -6 2301 112 0 0 chr1 211430039 211430342 -70763322 - AluSq SINE Alu -10 303 1 528 310 190 43 chr1 211430559 211430927 -70762737 + L3 LINE CR1 836 1257 -320 307 118 15 15 chr1 211431022 211431090 -70762574 + (TG)n Simple_repeat Simple_repeat 2 69 0 208 315 19 0 chr1 211431181 211431235 -70762429 + L3 LINE CR1 1464 1518 -59 691 265 49 5 chr1 211431275 211431460 -70762204 + MIR SINE MIR 28 220 -42 2348 82 0 26 chr1 211431582 211431888 -70761776 + AluSx SINE Alu 2 299 -13 420 328 51 34 chr1 211432741 211432918 -70760746 + Charlie8 DNA MER1_type 67 246 -2171 200 111 28 0 chr1 211433342 211433378 -70760286 + GA-rich Low_complexity Low_complexity 2 38 0 2214 123 0 3 chr1 211433888 211434198 -70759466 - AluSg SINE Alu -1 309 1 560 288 47 33 chr1 211435204 211435416 -70758248 - MIR SINE MIR -1 261 47 430 320 80 11 chr1 211435440 211435615 -70758049 + MIR SINE MIR 4 190 -72 294 327 23 0 chr1 211435683 211435797 -70757867 - MIR SINE MIR -71 137 19 1801 148 16 16 chr1 211436716 211437027 -70756637 - AluJo SINE Alu -1 311 1 23 33 0 0 chr1 211437028 211437058 -70756606 + AT_rich Low_complexity Low_complexity 1 30 0 215 307 104 59 chr1 211437640 211438217 -70755447 + L2 LINE L2 1994 2596 -718 190 313 94 0 chr1 211438397 211438461 -70755203 + MIR SINE MIR 189 258 -4 1658 120 4 4 chr1 211438739 211438972 -70754692 + AluSg SINE Alu 1 233 -77 2016 78 108 0 chr1 211439001 211439270 -70754394 + AluSp SINE Alu 1 298 -15 770 260 124 25 chr1 211439513 211440023 -70753641 - L2 LINE L2 -217 3096 2529 567 318 59 14 chr1 211440880 211441100 -70752564 - MIR SINE MIR -13 249 20 181 305 168 49 chr1 211441577 211441803 -70751861 + L2 LINE L2 2691 2943 -371 297 0 0 0 chr1 211442570 211442603 -70751061 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2410 160 82 51 chr1 211442623 211443149 -70750515 + L1MB8 LINE L1 5622 6163 -15 186 224 0 0 chr1 211445184 211445233 -70748431 + CT-rich Low_complexity Low_complexity 2 50 0 533 258 122 9 chr1 211445431 211445644 -70748020 + MIR SINE MIR 13 249 -13 186 219 0 0 chr1 211445613 211445654 -70748010 + L2 LINE L2 3264 3304 -9 * 2618 55 0 3 chr1 211447045 211447352 -70746312 + AluY SINE Alu 1 306 -5 394 256 43 43 chr1 211448231 211448395 -70745269 + MIR SINE MIR 44 207 -55 354 313 147 0 chr1 211449004 211449154 -70744510 - L2 LINE L2 0 3272 3101 315 369 50 57 chr1 211449536 211449818 -70743846 - L2 LINE L2 -28 3244 2965 180 306 59 65 chr1 211449888 211450058 -70743606 - L2 LINE L2 -431 2883 2715 297 0 0 0 chr1 211450272 211450305 -70743359 + (CA)n Simple_repeat Simple_repeat 2 34 0 185 284 95 26 chr1 211450305 211450421 -70743243 + L2 LINE L2 2947 3070 -202 652 304 44 4 chr1 211451913 211452140 -70741524 - MIR SINE MIR -13 249 14 2205 120 3 0 chr1 211454951 211455251 -70738413 + AluSx SINE Alu 1 301 -11 212 344 43 0 chr1 211455514 211455607 -70738057 + MIR SINE MIR 41 137 -71 329 335 63 44 chr1 211455755 211455913 -70737751 - L2 LINE L2 0 3272 3112 360 270 20 0 chr1 211456125 211456225 -70737439 + MIR SINE MIR 44 145 -117 568 268 103 41 chr1 211457484 211457678 -70735986 - MIR SINE MIR -54 208 3 255 61 0 0 chr1 211458828 211458861 -70734803 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 422 170 11 0 chr1 211458862 211458956 -70734708 + GA-rich Low_complexity Low_complexity 3 97 0 315 261 59 17 chr1 211459209 211459328 -70734336 - L1ME4a LINE L1 -70 6051 5928 2404 105 0 0 chr1 211459477 211459783 -70733881 - AluSq SINE Alu -7 306 1 180 133 213 53 chr1 211460090 211460165 -70733499 + MER5B DNA MER1_type 76 162 -16 1145 152 0 0 chr1 211461839 211462004 -70731660 + AluJb SINE Alu 137 301 -11 210 214 0 0 chr1 211463113 211463155 -70730509 - L2 LINE L2 0 3313 3272 1813 162 3 27 chr1 211463191 211463488 -70730176 + AluJo SINE Alu 1 290 -22 480 285 0 64 chr1 211464195 211464367 -70729297 + MIR3 SINE MIR 30 190 -18 519 291 52 22 chr1 211466288 211466518 -70727146 - L2 LINE L2 -527 2787 2551 2354 107 7 0 chr1 211466560 211466870 -70726794 + AluSx SINE Alu 1 312 0 205 200 0 0 chr1 211467369 211467409 -70726255 + A-rich Low_complexity Low_complexity 1 40 0 335 268 107 38 chr1 211467530 211467760 -70725904 - MIR SINE MIR -16 246 2 246 116 0 0 chr1 211469962 211470005 -70723659 + (TCCA)n Simple_repeat Simple_repeat 4 46 0 416 256 188 0 chr1 211470012 211470129 -70723535 - L2 LINE L2 0 3272 3134 338 257 126 103 chr1 211471062 211471276 -70722388 - MLT1J1 LTR MaLR -165 281 63 2386 90 0 3 chr1 211471482 211471782 -70721882 + AluY SINE Alu 1 299 -12 2170 117 7 10 chr1 211472623 211472932 -70720732 + AluSq SINE Alu 1 308 -5 195 100 0 0 chr1 211473124 211473154 -70720510 + (A)n Simple_repeat Simple_repeat 1 30 0 396 0 0 0 chr1 211474486 211474530 -70719134 + (TG)n Simple_repeat Simple_repeat 2 45 0 468 0 0 0 chr1 211475279 211475331 -70718333 + (TG)n Simple_repeat Simple_repeat 2 53 0 374 313 54 12 chr1 211476135 211476301 -70717363 + MIR3 SINE MIR 28 200 -8 258 32 0 0 chr1 211477454 211477485 -70716179 + (CTG)n Simple_repeat Simple_repeat 2 32 0 306 206 0 0 chr1 211477488 211477556 -70716108 + (TG)n Simple_repeat Simple_repeat 1 68 0 701 258 16 5 chr1 211478523 211478709 -70714955 + MIR SINE MIR 58 245 -17 322 109 34 42 chr1 211478787 211478906 -70714758 + (TTATA)n Simple_repeat Simple_repeat 2 119 0 673 261 60 49 chr1 211478906 211479255 -70714409 - L1MA9 LINE L1 -38 6274 5922 4780 208 89 50 chr1 211479256 211479503 -70714161 - L1MA9 LINE L1 -265 6047 5811 447 19 0 0 chr1 211479503 211479555 -70714109 + (TG)n Simple_repeat Simple_repeat 2 53 0 4780 208 89 50 chr1 211479555 211480017 -70713647 - L1MA9 LINE L1 -501 5811 5368 258 32 0 0 chr1 211480017 211480048 -70713616 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1496 142 69 62 chr1 211480055 211480329 -70713335 - AluJo SINE Alu -30 282 7 4780 208 89 50 chr1 211480329 211481261 -70712403 - L1MA9 LINE L1 -949 5363 4468 2157 133 0 0 chr1 211481261 211481561 -70712103 - AluSx SINE Alu -12 300 1 4780 208 89 50 chr1 211481561 211481724 -70711940 - L1MA9 LINE L1 -1844 4468 4313 2198 110 0 16 chr1 211481724 211482033 -70711631 + AluSg SINE Alu 2 305 -5 4780 208 89 50 chr1 211482033 211482380 -70711284 - L1MA9 LINE L1 -1999 4313 3981 1950 134 0 7 chr1 211482380 211482649 -70711015 - AluSx SINE Alu -45 267 1 4780 208 89 50 chr1 211482649 211482748 -70710916 - L1MA9 LINE L1 -2331 3981 3589 255 179 0 0 chr1 211482758 211482797 -70710867 + Alu SINE Alu 1 39 -260 452 137 147 11 chr1 211483149 211483244 -70710420 + MER3 DNA MER1_type 102 209 0 1900 174 0 3 chr1 211483439 211483737 -70709927 - AluJb SINE Alu -15 297 1 26 64 0 0 chr1 211484212 211484259 -70709405 + AT_rich Low_complexity Low_complexity 1 47 0 1833 188 0 0 chr1 211484522 211484826 -70708838 - AluJb SINE Alu -8 304 1 392 300 39 17 chr1 211484986 211485166 -70708498 + L2 LINE L2 2752 2935 -379 503 231 144 10 chr1 211485223 211485418 -70708246 + L2 LINE L2 3093 3313 0 2347 101 3 0 chr1 211485527 211485825 -70707839 + AluSx SINE Alu 1 299 -13 2149 127 3 0 chr1 211486030 211486322 -70707342 + AluSx SINE Alu 2 294 -18 1004 182 50 140 chr1 211486552 211486953 -70706711 + MLT1A1 LTR MaLR 1 365 0 483 240 93 81 chr1 211487151 211487209 -70706455 - MLT1L LTR MaLR -4 611 555 2445 76 0 3 chr1 211487209 211487511 -70706153 + AluY SINE Alu 1 301 -10 483 240 93 81 chr1 211487511 211487698 -70705966 - MLT1L LTR MaLR -60 555 363 225 200 0 0 chr1 211487867 211487907 -70705757 - MLT1L LTR MaLR -425 190 151 888 246 42 0 chr1 211487910 211488125 -70705539 + MER58A DNA MER1_type 1 224 0 2149 109 0 3 chr1 211488634 211488946 -70704718 - AluSx SINE Alu 0 311 1 180 0 0 0 chr1 211489089 211489109 -70704555 + (A)n Simple_repeat Simple_repeat 1 20 0 506 253 42 58 chr1 211489975 211490165 -70703499 + MIR SINE MIR 16 202 -60 3084 180 59 45 chr1 211490468 211490644 -70703020 - L1MC3 LINE L1 -15 7770 7598 2106 122 4 0 chr1 211490644 211490950 -70702714 + AluSg SINE Alu 1 307 0 3084 180 59 45 chr1 211490950 211491504 -70702160 - L1MC3 LINE L1 -187 7598 7045 210 37 0 0 chr1 211492043 211492070 -70701594 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4306 286 125 41 chr1 211493687 211495859 -70697805 + L2 LINE L2 771 3134 -179 2332 92 0 3 chr1 211495867 211496171 -70697493 + AluSc SINE Alu 1 303 -6 2356 63 0 10 chr1 211496417 211496716 -70696948 + AluY SINE Alu 1 296 -15 494 202 26 0 chr1 211497142 211497256 -70696408 + MER69A DNA AcHobo 57 173 -4 207 262 206 9 chr1 211497282 211497389 -70696275 - MIR SINE MIR -57 205 78 1053 110 0 0 chr1 211497659 211497805 -70695859 + AluSg/x SINE Alu 156 301 -11 628 210 31 56 chr1 211498252 211498414 -70695250 - MER5A DNA MER1_type -29 160 3 2320 101 0 3 chr1 211498722 211499030 -70694634 - AluSx SINE Alu -5 307 1 573 196 9 9 chr1 211499506 211499613 -70694051 + Tigger7 DNA MER2_type 1 107 -626 910 265 20 16 chr1 211499920 211500169 -70693495 + Tigger7 DNA MER2_type 6 255 -2232 561 168 0 11 chr1 211500177 211500272 -70693392 + Tigger7 DNA MER2_type 2397 2490 -1 714 228 10 27 chr1 211500569 211500752 -70692912 + L1MC4 LINE L1 6693 6960 -933 871 56 0 0 chr1 211500757 211500865 -70692799 + AluSg/x SINE Alu 203 310 0 738 164 7 7 chr1 211500878 211501030 -70692634 + L1MA6 LINE L1 5157 5308 -838 1375 167 41 4 chr1 211501032 211501278 -70692386 - Tigger2 DNA MER2_type -2 2716 2462 4313 154 50 18 chr1 211501333 211501838 -70691826 - Tigger2 DNA MER2_type -1961 757 270 2177 115 0 0 chr1 211501838 211502133 -70691531 - AluSg SINE Alu -15 295 1 2258 102 0 13 chr1 211502136 211502441 -70691223 - AluSq SINE Alu -12 301 1 4313 154 50 18 chr1 211502441 211502664 -70691000 - Tigger2 DNA MER2_type -2449 269 1 5910 142 10 16 chr1 211502664 211503664 -70690000 + L1MA6 LINE L1 5307 6300 0 3588 197 101 47 chr1 211503667 211503854 -70689810 + L1MC4 LINE L1 6958 7133 -862 1995 114 21 10 chr1 211503854 211504163 -70689501 + AluSg1 SINE Alu 1 309 0 3588 197 101 47 chr1 211504163 211504661 -70689003 + L1MC4 LINE L1 7133 7603 -392 1982 189 68 64 chr1 211504661 211504727 -70688937 - MLT1D LTR MaLR 0 505 441 2221 120 0 0 chr1 211504727 211505027 -70688637 + AluSq SINE Alu 1 300 -13 1982 189 68 64 chr1 211505027 211505275 -70688389 - MLT1D LTR MaLR -64 441 186 2045 133 7 3 chr1 211505275 211505576 -70688088 - AluSx SINE Alu -10 302 1 1982 189 68 64 chr1 211505576 211505763 -70687901 - MLT1D LTR MaLR -319 186 1 3588 197 101 47 chr1 211505763 211506012 -70687652 + L1MC4 LINE L1 7603 7899 -96 2758 41 13 0 chr1 211506012 211506327 -70687337 - L1PA5 LINE L1 -9 6145 5827 3588 197 101 47 chr1 211506327 211506430 -70687234 + L1MC4 LINE L1 7899 7995 0 1274 108 16 0 chr1 211506770 211506955 -70686709 + L1MD3 LINE L1 7808 7995 0 205 247 42 18 chr1 211507293 211507459 -70686205 + (GTGTG)n Simple_repeat Simple_repeat 1 170 0 249 234 54 6 chr1 211507767 211507934 -70685730 + (GTGTG)n Simple_repeat Simple_repeat 1 175 0 2118 128 10 0 chr1 211511116 211511412 -70682252 - AluSx SINE Alu -13 299 1 437 169 0 0 chr1 211511471 211511536 -70682128 + MER58 DNA MER1_type 2354 2418 -2 270 81 0 0 chr1 211511571 211511608 -70682056 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr1 211512074 211512096 -70681568 + AT_rich Low_complexity Low_complexity 1 22 0 293 296 31 20 chr1 211515486 211515584 -70678080 - MIR SINE MIR -150 112 14 1572 176 27 30 chr1 211515997 211516298 -70677366 - AluJo SINE Alu -12 300 1 22 0 0 0 chr1 211516679 211516701 -70676963 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1 211517060 211517080 -70676584 + (T)n Simple_repeat Simple_repeat 1 20 0 1976 121 34 24 chr1 211518254 211518552 -70675112 - AluSx SINE Alu -9 303 3 22 0 0 0 chr1 211520106 211520128 -70673536 + AT_rich Low_complexity Low_complexity 1 22 0 254 294 186 0 chr1 211521313 211521415 -70672249 - MIR SINE MIR -130 132 12 1529 153 60 53 chr1 211521416 211521717 -70671947 - AluJb SINE Alu -9 303 1 276 301 19 10 chr1 211521983 211522086 -70671578 + L1MC5 LINE L1 7715 7818 -143 893 223 34 48 chr1 211522802 211523071 -70670593 - L1ME2 LINE L1 0 6164 5900 863 148 16 0 chr1 211523496 211523624 -70670040 - FLAM_C SINE Alu -2 131 2 2351 107 0 0 chr1 211524115 211524424 -70669240 + AluSq SINE Alu 1 309 -4 1964 112 25 0 chr1 211525004 211525309 -70668355 - AluSx SINE Alu 0 312 1 288 0 0 0 chr1 211525865 211525897 -70667767 + (CA)n Simple_repeat Simple_repeat 2 33 0 2352 91 10 0 chr1 211526135 211526433 -70667231 - AluSp SINE Alu -12 301 1 266 308 26 0 chr1 211527212 211527290 -70666374 + L2 LINE L2 3184 3263 -9 2134 102 7 10 chr1 211527939 211528244 -70665420 + AluY SINE Alu 1 304 -7 813 20 0 20 chr1 211528975 211529073 -70664591 - L1PA4 LINE L1 0 6155 6060 525 253 236 4 chr1 211529175 211529404 -70664260 + L2 LINE L2 2201 2482 -832 598 314 128 30 chr1 211529445 211530027 -70663637 + L2 LINE L2 2643 3313 0 314 314 37 30 chr1 211531552 211531713 -70661951 - MER5A DNA MER1_type 0 178 14 1234 141 57 126 chr1 211532130 211532486 -70661178 + MER33 DNA MER1_type 1 317 -7 282 250 142 68 chr1 211533304 211533480 -70660184 - MIR3 SINE MIR -5 203 15 895 283 74 26 chr1 211533591 211533930 -70659734 - L2 LINE L2 0 3313 2959 1120 269 114 36 chr1 211533964 211534410 -70659254 - L2 LINE L2 -503 2811 2331 318 302 157 38 chr1 211534522 211534840 -70658824 - LTR33 LTR ERVL -165 356 1 296 279 212 22 chr1 211534841 211535063 -70658601 - L2 LINE L2 -996 2318 2055 2209 87 0 24 chr1 211535980 211536315 -70657349 - AluSx SINE Alu 0 328 1 1677 167 23 13 chr1 211537260 211537560 -70656104 - AluJo SINE Alu -7 305 3 1160 188 5 5 chr1 211537695 211537908 -70655756 - AluJb SINE Alu -8 304 92 368 323 129 25 chr1 211537938 211538139 -70655525 + L2 LINE L2 2129 2350 -964 2235 96 7 0 chr1 211538254 211538545 -70655119 + AluSx SINE Alu 1 293 -19 2119 134 0 0 chr1 211538712 211539010 -70654654 - AluSx SINE Alu -14 298 1 24 0 0 0 chr1 211540476 211540500 -70653164 + AT_rich Low_complexity Low_complexity 1 24 0 2350 71 0 7 chr1 211540961 211541255 -70652409 - AluSc SINE Alu -17 292 1 2131 62 44 7 chr1 211541307 211541579 -70652085 - AluY SINE Alu -16 295 14 2169 121 0 7 chr1 211543080 211543385 -70650279 + AluSq SINE Alu 1 303 -10 1505 192 41 21 chr1 211544131 211544422 -70649242 - AluJo SINE Alu -15 297 1 585 171 145 0 chr1 211544431 211544548 -70649116 - AluJb SINE Alu -178 134 1 2311 87 3 13 chr1 211545388 211545697 -70647967 - AluSx SINE Alu -6 306 1 2269 105 20 0 chr1 211546064 211546369 -70647295 + AluSx SINE Alu 1 311 -1 670 200 176 18 chr1 211547253 211547418 -70646246 + MIR SINE MIR 3 193 -69 201 267 132 128 chr1 211547699 211547987 -70645677 + L2 LINE L2 2168 2456 -858 2581 50 0 0 chr1 211549603 211549902 -70643762 - AluY SINE Alu -12 299 1 368 261 270 9 chr1 211550052 211550282 -70643382 + L2 LINE L2 3024 3313 0 249 211 31 57 chr1 211550660 211550786 -70642878 + MLT1H LTR MaLR 415 527 -22 228 206 27 41 chr1 211550877 211550950 -70642714 + MER5A DNA MER1_type 118 189 0 1088 174 28 67 chr1 211551267 211551520 -70642144 + MIR SINE MIR 18 260 -2 2163 113 0 49 chr1 211552196 211552524 -70641140 - AluSx SINE Alu 0 312 1 255 269 74 65 chr1 211555029 211555137 -70638527 - L2 LINE L2 -10 3262 3154 254 383 19 9 chr1 211555663 211555770 -70637894 + MIR3 SINE MIR 9 116 -92 683 293 87 107 chr1 211556665 211558024 -70635640 - L2 LINE L2 -79 3193 1878 319 136 0 0 chr1 211558132 211558191 -70635473 + Alu SINE Alu 240 298 -2 186 287 82 82 chr1 211558201 211558396 -70635268 - L2 LINE L2 -1484 1830 1636 181 322 17 0 chr1 211561295 211561354 -70632310 + L2 LINE L2 3191 3250 -22 805 131 0 51 chr1 211561428 211561565 -70632099 - FLAM_A SINE Alu -3 130 1 1222 68 0 0 chr1 211561576 211561723 -70631941 - AluY SINE Alu -16 295 149 22 56 0 0 chr1 211561772 211561808 -70631856 + AT_rich Low_complexity Low_complexity 1 36 0 391 123 27 27 chr1 211561822 211561895 -70631769 + MADE1 DNA Mariner 8 80 0 369 264 61 0 chr1 211563025 211563136 -70630528 - MIR SINE MIR -67 141 61 869 165 53 6 chr1 211563402 211563572 -70630092 + MER58A DNA MER1_type 47 224 0 1820 173 10 3 chr1 211564089 211564390 -70629274 + AluJo SINE Alu 1 303 -9 592 225 188 28 chr1 211564929 211565147 -70628517 - MIR SINE MIR -4 258 6 2254 115 7 0 chr1 211565404 211565709 -70627955 + AluSx SINE Alu 1 307 -5 221 393 32 46 chr1 211566460 211566679 -70626985 - L2 LINE L2 -409 2905 2690 210 275 0 99 chr1 211566862 211566953 -70626711 + L2 LINE L2 3232 3313 0 304 359 135 16 chr1 211566958 211567337 -70626327 - L2 LINE L2 -1015 2299 1876 28 0 0 0 chr1 211567546 211567574 -70626090 + AT_rich Low_complexity Low_complexity 1 28 0 2144 103 7 0 chr1 211567943 211568257 -70625407 + AluSq SINE Alu 1 316 0 210 271 17 17 chr1 211568535 211568594 -70625070 + L2 LINE L2 3247 3305 -8 315 333 128 0 chr1 211568661 211568802 -70624862 + MIR SINE MIR 34 192 -70 939 224 40 9 chr1 211569326 211569549 -70624115 - MIR SINE MIR -18 244 15 258 365 52 0 chr1 211570825 211570921 -70622743 - L2 LINE L2 -36 3236 3136 180 263 0 0 chr1 211570940 211570978 -70622686 + MIR SINE MIR 13 50 -212 1085 202 74 4 chr1 211571169 211571412 -70622252 + MIR SINE MIR 3 262 0 312 261 0 0 chr1 211571433 211571502 -70622162 - MIR SINE MIR -75 187 119 394 207 0 0 chr1 211572622 211572704 -70620960 - MER20B DNA MER1_type -196 587 506 5565 131 51 23 chr1 211572903 211573986 -70619678 + L1MC1 LINE L1 5202 6321 -12 1536 176 51 0 chr1 211574078 211574333 -70619331 - AluJb SINE Alu -44 268 1 2196 97 0 7 chr1 211574712 211575022 -70618642 + AluSg SINE Alu 1 308 -2 1061 237 94 40 chr1 211575490 211575636 -70618028 - L2 LINE L2 -1041 2273 2136 1464 126 36 5 chr1 211575636 211575858 -70617806 - MER30 DNA MER1_type -1 229 1 1061 237 94 40 chr1 211575858 211576083 -70617581 - L2 LINE L2 -1178 2136 1882 475 296 71 9 chr1 211576429 211576601 -70617063 - MIR SINE MIR -36 172 14 2075 125 7 0 chr1 211576698 211576993 -70616671 - AluSg SINE Alu -13 297 1 259 238 56 24 chr1 211577289 211577415 -70616249 + L1ME2 LINE L1 1337 1466 -4918 2079 98 4 0 chr1 211577455 211577729 -70615935 + AluSg SINE Alu 1 275 -35 637 97 0 0 chr1 211577731 211577824 -70615840 + AluSg/x SINE Alu 217 309 -3 941 278 67 56 chr1 211577835 211578385 -70615279 + L1ME2 LINE L1 1679 2234 -4329 1144 168 0 5 chr1 211578411 211578602 -70615062 + AluJb SINE Alu 120 309 -3 1418 204 85 79 chr1 211578612 211578701 -70614963 + L1ME2 LINE L1 2741 2828 -3554 2086 132 7 0 chr1 211578701 211579005 -70614659 + AluSx SINE Alu 1 306 -6 1418 204 85 79 chr1 211579005 211579307 -70614357 + L1ME2 LINE L1 2828 3127 -3255 1714 196 3 22 chr1 211579307 211579618 -70614046 + AluJo SINE Alu 2 306 -6 1418 204 85 79 chr1 211579618 211579945 -70613719 + L1ME2 LINE L1 3127 3464 -2918 * 1438 201 87 91 chr1 211579941 211580462 -70613202 + L1ME2 LINE L1 4793 5312 -1070 1364 190 12 118 chr1 211580462 211580868 -70612796 + MLT1A1 LTR MaLR 1 363 -2 1438 201 87 91 chr1 211580868 211581014 -70612650 + L1ME2 LINE L1 5312 5457 -925 269 309 21 0 chr1 211581014 211581111 -70612553 + (TA)n Simple_repeat Simple_repeat 1 99 0 1075 218 55 96 chr1 211581132 211581516 -70612148 + L1ME2 LINE L1 5886 6245 -155 1881 124 67 0 chr1 211581516 211581783 -70611881 + AluSx SINE Alu 1 285 -27 1075 218 55 96 chr1 211581783 211581908 -70611756 + L1ME2 LINE L1 6245 6374 -26 218 352 110 21 chr1 211582260 211582496 -70611168 + L2 LINE L2 1708 1964 -1350 717 228 0 0 chr1 211582544 211582680 -70610984 - MER5A DNA MER1_type -53 136 1 2273 100 13 0 chr1 211583599 211583899 -70609765 + AluSx SINE Alu 1 304 -8 612 190 183 0 chr1 211583969 211584106 -70609558 + MER3 DNA MER1_type 48 209 0 297 146 0 0 chr1 211584063 211584111 -70609553 - MER3 DNA MER1_type -119 90 43 * 422 159 68 11 chr1 211584207 211584295 -70609369 + MER3 DNA MER1_type 117 209 0 542 266 209 34 chr1 211584695 211585056 -70608608 + LTR67 LTR ERVL 29 482 -75 1991 182 104 13 chr1 211585056 211585518 -70608146 + MLT1D LTR MaLR 1 504 -1 542 266 209 34 chr1 211585518 211585596 -70608068 + LTR67 LTR ERVL 482 545 -12 1194 137 43 28 chr1 211585663 211585874 -70607790 + AluJb SINE Alu 83 296 -16 2131 113 0 0 chr1 211585874 211586166 -70607498 + AluSg SINE Alu 1 292 -18 28 86 0 0 chr1 211587261 211587331 -70606333 + AT_rich Low_complexity Low_complexity 1 70 0 344 277 261 16 chr1 211587377 211587561 -70606103 + MIR SINE MIR 34 262 0 611 192 17 8 chr1 211588202 211588322 -70605342 + FLAM_A SINE Alu 1 121 -12 569 319 78 65 chr1 211588440 211588992 -70604672 + L2 LINE L2 2726 3272 0 935 115 8 0 chr1 211589027 211589157 -70604507 + FLAM_C SINE Alu 2 132 -1 21 57 0 0 chr1 211589389 211589424 -70604240 + AT_rich Low_complexity Low_complexity 1 35 0 197 258 129 0 chr1 211589768 211589830 -70603834 + MIR SINE MIR 183 252 -10 229 132 19 19 chr1 211589976 211590029 -70603635 + CT-rich Low_complexity Low_complexity 3 55 0 380 90 0 30 chr1 211590030 211590097 -70603567 + (TCCCC)n Simple_repeat Simple_repeat 4 68 0 201 154 0 0 chr1 211590097 211590136 -70603528 + T-rich Low_complexity Low_complexity 4 42 0 1588 157 41 31 chr1 211590155 211590448 -70603216 - AluJb SINE Alu -16 296 1 1833 171 0 0 chr1 211590745 211591059 -70602605 - AluJb SINE Alu 0 318 5 245 339 139 0 chr1 211591504 211591619 -70602045 - L2 LINE L2 -38 3234 3104 1167 126 12 0 chr1 211592147 211592314 -70601350 + AluSg/x SINE Alu 135 303 -7 216 273 18 36 chr1 211592777 211592887 -70600777 + GA-rich Low_complexity Low_complexity 3 110 0 1345 163 4 37 chr1 211593194 211593439 -70600225 + AluJo SINE Alu 59 295 -17 299 100 0 0 chr1 211593495 211593535 -70600129 - U2 snRNA snRNA -148 40 1 222 37 0 0 chr1 211593603 211593630 -70600034 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2039 150 3 7 chr1 211593750 211594057 -70599607 - AluSx SINE Alu -2 310 5 2028 146 3 16 chr1 211594180 211594495 -70599169 - AluJb SINE Alu -1 311 1 368 282 203 15 chr1 211594586 211594852 -70598812 - L2 LINE L2 -798 2516 2201 1878 139 17 14 chr1 211594970 211595103 -70598561 + AluJo SINE Alu 1 132 -180 1921 123 11 18 chr1 211595103 211595410 -70598254 + AluSx SINE Alu 1 305 0 1878 139 17 14 chr1 211595410 211595570 -70598094 + AluJo SINE Alu 132 296 -16 28 0 0 0 chr1 211596114 211596142 -70597522 + AT_rich Low_complexity Low_complexity 1 28 0 2305 102 3 0 chr1 211596198 211596501 -70597163 + AluSx SINE Alu 1 304 -8 634 244 16 0 chr1 211597064 211597187 -70596477 + FLAM_A SINE Alu 2 126 -7 374 260 77 32 chr1 211597300 211597546 -70596118 - L1MDa LINE L1 -3734 2806 2550 1848 144 0 4 chr1 211597607 211597885 -70595779 - AluSx SINE Alu -12 300 24 192 77 0 0 chr1 211597914 211597940 -70595724 + (T)n Simple_repeat Simple_repeat 1 26 0 2218 63 0 28 chr1 211598113 211598425 -70595239 - AluY SINE Alu 0 305 2 481 316 46 40 chr1 211598609 211598873 -70594791 - L1MDa LINE L1 -742 2159 1781 2404 76 0 0 chr1 211598873 211599164 -70594500 - AluSg SINE Alu -19 291 1 481 316 46 40 chr1 211599164 211599282 -70594382 - L1MDa LINE L1 -1120 1781 1665 2307 226 78 29 chr1 211599406 211599968 -70593696 - MLT1G LTR MaLR 0 590 1 1438 149 5 14 chr1 211600058 211600280 -70593384 - AluJo SINE Alu -92 220 1 1851 279 128 50 chr1 211600493 211600885 -70592779 + L1MD3 LINE L1 2653 3013 -3133 2351 108 0 6 chr1 211600885 211601199 -70592465 + AluSx SINE Alu 1 312 0 1851 279 128 50 chr1 211601199 211602708 -70590956 + L1MD3 LINE L1 3013 4703 -1443 846 125 40 53 chr1 211602931 211602974 -70590690 - Charlie1 DNA MER1_type 0 2761 2719 2232 97 7 0 chr1 211602974 211603262 -70590402 - AluSp SINE Alu -23 290 1 846 125 40 53 chr1 211603262 211603370 -70590294 - Charlie1 DNA MER1_type -42 2719 2612 * 1194 204 25 17 chr1 211603345 211603585 -70590079 - Charlie1 DNA MER1_type -2519 242 1 709 274 38 16 chr1 211603611 211603925 -70589739 + L1MC/D LINE L1 5004 5324 -822 394 282 136 27 chr1 211603934 211604154 -70589510 + L1MC/D LINE L1 5383 5626 -2182 480 248 168 80 chr1 211604598 211604980 -70588684 + MLT1L LTR MaLR 102 511 0 875 189 7 0 chr1 211605012 211605165 -70588499 - AluJo SINE Alu -24 288 135 22 0 0 30 chr1 211605166 211605186 -70588478 + AT_rich Low_complexity Low_complexity 1 21 -11 1763 68 8 30 chr1 211605186 211605420 -70588244 + L1PA14 LINE L1 5927 6155 -6 22 0 0 30 chr1 211605420 211605432 -70588232 + AT_rich Low_complexity Low_complexity 21 32 0 680 194 32 8 chr1 211605432 211605556 -70588108 - AluJo SINE Alu -175 127 1 21 36 0 0 chr1 211606081 211606109 -70587555 + AT_rich Low_complexity Low_complexity 1 28 0 360 158 74 32 chr1 211606519 211606614 -70587050 + L1MCb LINE L1 985 1083 -4962 503 219 37 61 chr1 211606619 211606696 -70586968 + L1MD3 LINE L1 4774 4851 -1295 2310 75 0 30 chr1 211606696 211607001 -70586663 - AluY SINE Alu -15 296 1 503 219 37 61 chr1 211607001 211607087 -70586577 + L1MD3 LINE L1 4851 4933 -1213 484 157 30 30 chr1 211607090 211607224 -70586440 + GA-rich Low_complexity Low_complexity 3 136 0 4596 210 58 45 chr1 211607243 211608850 -70584814 + L1MD3 LINE L1 4964 5397 -749 369 0 0 0 chr1 211608851 211608892 -70584772 + (TG)n Simple_repeat Simple_repeat 2 42 0 679 260 72 29 chr1 211608892 211609169 -70584495 - MER68 LTR ERV1 -273 289 1 1182 170 191 27 chr1 211609169 211609250 -70584414 + L1MD3 LINE L1 6895 6961 -1034 249 57 0 0 chr1 211609250 211609285 -70584379 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1182 170 191 27 chr1 211609285 211609325 -70584339 + L1MD3 LINE L1 6961 6993 -1002 189 107 0 0 chr1 211609325 211609353 -70584311 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1182 170 191 27 chr1 211609353 211609560 -70584104 + L1MD3 LINE L1 6993 7278 -717 356 233 0 0 chr1 211609560 211609633 -70584031 + MLT1F1 LTR MaLR 1 73 -494 236 232 58 0 chr1 211609705 211609774 -70583890 + MLT1F1 LTR MaLR 75 147 -420 2605 188 81 6 chr1 211609774 211610306 -70583358 + L1MD3 LINE L1 7424 7995 0 1547 157 82 4 chr1 211610470 211610738 -70582926 - MLT1A1 LTR MaLR 0 365 77 523 190 49 79 chr1 211610738 211610928 -70582736 - LTR45B LTR ERV1 0 525 305 21 36 0 0 chr1 211611126 211611154 -70582510 + AT_rich Low_complexity Low_complexity 1 28 0 409 169 0 48 chr1 211611268 211611351 -70582313 - MLT1A1 LTR MaLR -286 79 1 207 0 0 0 chr1 211611773 211611796 -70581868 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 208 211 53 13 chr1 211613005 211613081 -70580583 + (TTATA)n Simple_repeat Simple_repeat 5 83 0 362 273 107 7 chr1 211614318 211614468 -70579196 - MER103 DNA DNA 0 166 2 845 262 148 35 chr1 211615458 211615977 -70577687 - L1MC4a LINE L1 -1785 6023 5446 333 0 0 0 chr1 211615982 211616019 -70577645 + (TG)n Simple_repeat Simple_repeat 2 38 0 2288 87 0 3 chr1 211616149 211616449 -70577215 + AluY SINE Alu 1 299 -12 196 313 20 73 chr1 211616715 211616865 -70576799 + L2 LINE L2 760 901 -2413 622 251 151 20 chr1 211617917 211618216 -70575448 + L2 LINE L2 2368 2705 -609 2158 140 35 23 chr1 211618239 211618582 -70575082 + THE1B LTR MaLR 1 347 -17 182 342 43 8 chr1 211619021 211619138 -70574526 - L2 LINE L2 -248 3065 2945 615 221 0 52 chr1 211619729 211619865 -70573799 + FLAM_A SINE Alu 1 129 -4 2221 130 3 0 chr1 211619953 211620260 -70573404 + AluSx SINE Alu 1 308 -4 384 342 33 0 chr1 211620952 211621072 -70572592 + L2 LINE L2 3186 3309 -4 22 35 0 0 chr1 211621325 211621354 -70572310 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr1 211621804 211621829 -70571835 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 283 211 0 40 chr1 211623551 211623627 -70570037 + C-rich Low_complexity Low_complexity 6 78 0 2318 69 0 3 chr1 211625511 211625827 -70567837 + AluSq SINE Alu 2 313 0 191 323 115 0 chr1 211625936 211626032 -70567632 - L2 LINE L2 -20 3293 3187 424 277 77 15 chr1 211626226 211626356 -70567308 - MIR3 SINE MIR -40 168 31 399 273 215 39 chr1 211626384 211626644 -70567020 - L2 LINE L2 0 3313 3008 261 0 0 0 chr1 211634570 211634599 -70559065 + (CA)n Simple_repeat Simple_repeat 2 30 0 793 192 0 0 chr1 211635622 211635747 -70557917 - FLAM_A SINE Alu -8 125 1 1726 152 99 22 chr1 211640736 211641059 -70552605 + MER7A DNA MER2_type 1 346 0 574 230 130 7 chr1 211641457 211641635 -70552029 - L1ME3A LINE L1 0 6166 5977 1714 156 18 0 chr1 211642285 211642560 -70551104 - AluJb SINE Alu -32 280 1 21 0 0 0 chr1 211642745 211642766 -70550898 + AT_rich Low_complexity Low_complexity 1 21 0 238 303 249 11 chr1 211642777 211642962 -70550702 - MIR SINE MIR -20 242 14 442 194 61 10 chr1 211643012 211643110 -70550554 - MER5B DNA MER1_type -55 123 21 235 250 0 0 chr1 211643203 211643255 -70550409 + MER5A DNA MER1_type 137 188 -1 185 229 0 0 chr1 211643724 211643759 -70549905 + L3b LINE CR1 1522 1556 -27 310 255 53 43 chr1 211644346 211644440 -70549224 - L2 LINE L2 -10 3262 3168 2073 103 33 0 chr1 211644651 211644924 -70548740 - AluSg SINE Alu -14 296 15 22 0 0 0 chr1 211645243 211645265 -70548399 + AT_rich Low_complexity Low_complexity 1 22 0 357 142 0 0 chr1 211645432 211645490 -70548174 + Alu SINE Alu 3 52 -248 1541 107 24 0 chr1 211645490 211645695 -70547969 + AluSg/x SINE Alu 93 302 -8 937 98 0 8 chr1 211645706 211645828 -70547836 + AluSq/x SINE Alu 13 133 -180 186 103 0 0 chr1 211645829 211645858 -70547806 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 236 206 147 0 chr1 211645916 211645984 -70547680 + MIR SINE MIR 185 262 0 350 297 10 0 chr1 211646011 211646125 -70547539 - MIR SINE MIR -62 146 35 738 209 34 14 chr1 211646402 211646550 -70547114 - MER5A DNA MER1_type 0 189 39 196 225 70 84 chr1 211646593 211646664 -70547000 + MIR SINE MIR 126 195 -67 1641 128 109 35 chr1 211646711 211647024 -70546640 + MER1B DNA MER1_type 1 336 -3 2246 122 0 0 chr1 211647595 211647899 -70545765 - AluSx SINE Alu -8 304 1 576 178 9 19 chr1 211648164 211648271 -70545393 + FLAM_A SINE Alu 16 121 -21 667 145 110 14 chr1 211648284 211648429 -70545235 - MER5A DNA MER1_type -28 161 3 2296 109 0 0 chr1 211648612 211648915 -70544749 + AluSx SINE Alu 1 303 -9 1733 173 3 7 chr1 211652817 211653112 -70540552 - AluJb SINE Alu -18 294 1 1048 140 4 2 chr1 211653831 211654068 -70539596 + AluJb SINE Alu 2 293 -19 21 0 0 0 chr1 211654185 211654206 -70539458 + AT_rich Low_complexity Low_complexity 1 21 0 345 340 38 0 chr1 211654293 211654399 -70539265 - L2 LINE L2 0 3313 3204 302 283 283 0 chr1 211654447 211654634 -70539030 - L1ME4a LINE L1 0 6121 5882 323 306 112 6 chr1 211655006 211655176 -70538488 + L1ME4a LINE L1 5730 5917 -204 2121 92 0 83 chr1 211655938 211656265 -70537399 - AluSx SINE Alu -12 300 1 301 255 14 103 chr1 211656398 211656463 -70537201 - L2 LINE L2 -497 2817 2770 1721 153 78 4 chr1 211656463 211656744 -70536920 + AluJb SINE Alu 1 302 -10 301 255 14 103 chr1 211656744 211656823 -70536841 - L2 LINE L2 -544 2770 2686 625 259 330 13 chr1 211656889 211657364 -70536300 - L2 LINE L2 -801 2513 1888 369 287 54 0 chr1 211657370 211657537 -70536127 + MER104 DNA Tc2 1 176 -4 219 293 35 0 chr1 211657537 211657595 -70536069 - L2 LINE L2 -1432 1882 1823 1008 189 50 29 chr1 211657633 211657871 -70535793 - AluJo SINE Alu -2 310 68 378 253 127 25 chr1 211658145 211658303 -70535361 + MIR3 SINE MIR 34 207 -1 213 132 0 0 chr1 211658805 211658843 -70534821 + (TA)n Simple_repeat Simple_repeat 2 39 0 1410 154 9 118 chr1 211658949 211659287 -70534377 - AluJo SINE Alu -1 301 1 186 189 0 0 chr1 211659749 211659786 -70533878 + CT-rich Low_complexity Low_complexity 1 37 0 209 274 134 100 chr1 211660059 211660410 -70533254 - L2 LINE L2 -1231 2083 1721 21 0 0 0 chr1 211661000 211661021 -70532643 + AT_rich Low_complexity Low_complexity 1 21 0 2132 94 7 17 chr1 211661021 211661319 -70532345 - AluSx SINE Alu -17 295 1 34 0 0 0 chr1 211663074 211663108 -70530556 + AT_rich Low_complexity Low_complexity 1 34 0 574 195 17 8 chr1 211663404 211663522 -70530142 + MER58B DNA MER1_type 198 316 -25 204 322 91 33 chr1 211665402 211665523 -70528141 + L3 LINE CR1 1201 1328 -249 382 289 86 13 chr1 211665549 211665701 -70527963 + L3b LINE CR1 1413 1575 -8 433 246 55 18 chr1 211666377 211666487 -70527177 - L2 LINE L2 -5 3308 3195 1904 102 74 25 chr1 211669440 211669725 -70523939 + AluSx SINE Alu 1 299 -13 621 256 198 9 chr1 211672388 211672732 -70520932 - L1ME4a LINE L1 -17 6104 5696 425 275 191 0 chr1 211672779 211672910 -70520754 - MER5A DNA MER1_type -3 186 31 515 310 170 45 chr1 211673505 211673759 -70519905 + L2 LINE L2 1542 1763 -1551 1951 83 0 26 chr1 211673759 211674024 -70519640 + AluY SINE Alu 34 291 -20 515 310 170 45 chr1 211674024 211674611 -70519053 + L2 LINE L2 1763 2488 -826 272 344 136 60 chr1 211674897 211675266 -70518398 + L2 LINE L2 2836 3232 -40 22 0 0 0 chr1 211675430 211675452 -70518212 + AT_rich Low_complexity Low_complexity 1 22 0 991 144 6 40 chr1 211677550 211677723 -70515941 - AluY SINE Alu -144 167 1 324 250 24 0 chr1 211677724 211677808 -70515856 + L1M4 LINE L1 4848 4933 -1213 420 128 20 81 chr1 211677809 211677958 -70515706 + GA-rich Low_complexity Low_complexity 2 141 0 444 185 59 8 chr1 211677965 211678084 -70515580 + L1M4 LINE L1 4964 5088 -1058 192 278 0 0 chr1 211678085 211678121 -70515543 - L2 LINE L2 -75 3197 3162 690 289 65 0 chr1 211678156 211678357 -70515307 + MIR SINE MIR 42 255 -7 479 310 217 15 chr1 211678447 211678768 -70514896 - L2 LINE L2 -190 3082 2704 262 268 92 105 chr1 211678760 211678913 -70514751 + L2 LINE L2 2933 3083 -189 * 1070 96 0 0 chr1 211678999 211679135 -70514529 + AluSg/x SINE Alu 169 304 -6 853 312 66 24 chr1 211679300 211679752 -70513912 - L3 LINE CR1 -5 1572 1102 560 202 11 56 chr1 211680518 211680696 -70512968 - L1MC5 LINE L1 -48 7913 7744 1976 151 3 0 chr1 211680710 211681009 -70512655 - AluJb SINE Alu -12 300 1 705 310 136 30 chr1 211681166 211681701 -70511963 - L2 LINE L2 -385 2929 2338 295 283 208 52 chr1 211681703 211682180 -70511484 - L2 LINE L2 -1518 1796 1246 189 0 0 0 chr1 211682480 211682501 -70511163 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 211682571 211682593 -70511071 + AT_rich Low_complexity Low_complexity 1 22 0 2295 113 0 0 chr1 211683042 211683342 -70510322 - AluSg SINE Alu -10 300 1 1639 142 58 71 chr1 211683552 211683932 -70509732 - THE1C LTR MaLR 0 375 1 7214 120 4 2 chr1 211685316 211686510 -70507154 + L1P LINE L1 1310 2505 -3641 455 338 74 62 chr1 211686892 211687407 -70506257 + L1ME LINE L1 1 521 -5549 383 267 60 27 chr1 211687472 211687622 -70506042 + MER58 DNA MER1_type 6 160 -2260 23 33 0 0 chr1 211687779 211687809 -70505855 + AT_rich Low_complexity Low_complexity 1 30 0 2245 117 19 32 chr1 211688180 211688549 -70505115 + THE1B LTR MaLR 1 364 0 248 312 138 9 chr1 211689009 211689118 -70504546 - MIR3 SINE MIR -44 164 42 2187 141 0 0 chr1 211689289 211689601 -70504063 - AluSx SINE Alu 0 312 1 2092 119 7 3 chr1 211689603 211689898 -70503766 - AluSx SINE Alu -16 296 1 256 294 198 7 chr1 211689974 211690277 -70503387 - L1M4 LINE L1 -3114 3032 2672 480 169 0 0 chr1 211690277 211690360 -70503304 + AluSg/x SINE Alu 212 294 -18 420 311 48 78 chr1 211690605 211690931 -70502733 + L2 LINE L2 2743 3063 -209 207 167 0 0 chr1 211690938 211690974 -70502690 + (CAT)n Simple_repeat Simple_repeat 1 36 0 456 309 153 5 chr1 211690974 211691197 -70502467 - MIR SINE MIR -5 257 2 383 351 54 0 chr1 211691256 211691404 -70502260 + L2 LINE L2 3117 3272 0 598 117 11 0 chr1 211691405 211691499 -70502165 - MER20 DNA MER1_type 0 219 125 262 364 42 0 chr1 211691602 211691720 -70501944 - MIR SINE MIR -66 142 20 284 118 39 0 chr1 211692050 211692101 -70501563 + MSTC LTR MaLR 3 55 -373 2260 126 8 43 chr1 211692162 211692492 -70501172 + MSTC LTR MaLR 41 356 -72 2518 56 0 0 chr1 211692492 211692794 -70500870 - AluY SINE Alu -9 302 1 2260 126 8 43 chr1 211692794 211692861 -70500803 + MSTC LTR MaLR 356 424 -4 1436 128 26 6 chr1 211693221 211693661 -70500003 + LTR54 LTR ERV1 1 510 0 261 177 81 0 chr1 211693764 211693826 -70499838 + L2 LINE L2 2996 3062 -210 203 135 27 0 chr1 211693944 211693981 -70499683 + MIR SINE MIR 126 163 -99 1859 148 3 7 chr1 211693981 211694264 -70499400 + AluJo SINE Alu 1 282 -30 499 189 0 79 chr1 211694286 211694413 -70499251 + MIR SINE MIR 146 262 0 398 306 9 0 chr1 211696857 211696965 -70496699 - L2 LINE L2 -18 3254 3146 419 269 129 11 chr1 211697515 211697701 -70495963 - MIR SINE MIR 0 262 55 2183 132 3 0 chr1 211699090 211699394 -70494270 + AluSx SINE Alu 1 305 -7 195 171 0 0 chr1 211699649 211699684 -70493980 + L3 LINE CR1 1539 1573 -4 2232 112 0 3 chr1 211699817 211700113 -70493551 - AluSg SINE Alu -15 295 1 2201 103 10 17 chr1 211701217 211701517 -70492147 - AluJb SINE Alu -9 303 6 560 284 102 36 chr1 211701520 211701854 -70491810 + L2 LINE L2 2459 2814 -500 315 270 20 20 chr1 211701971 211702071 -70491593 + L2 LINE L2 2996 3095 -177 911 202 28 0 chr1 211702125 211702303 -70491361 + MER5A DNA MER1_type 2 184 -5 253 211 0 0 chr1 211702378 211702430 -70491234 + L2 LINE L2 3221 3272 0 313 317 88 13 chr1 211702885 211703112 -70490552 - MIR SINE MIR -18 244 1 248 178 0 0 chr1 211703697 211703742 -70489922 - L1P3 LINE L1 -327 5827 5783 2632 58 0 0 chr1 211704025 211704334 -70489330 - AluY SINE Alu -2 309 1 2331 75 12 12 chr1 211704364 211704683 -70488981 - L1PA13 LINE L1 -566 5597 5279 3616 97 14 45 chr1 211704683 211705227 -70488437 + L1PA13 LINE L1 5609 6149 -14 29 28 0 0 chr1 211707677 211707713 -70485951 + AT_rich Low_complexity Low_complexity 1 36 0 278 284 7 14 chr1 211707902 211708036 -70485628 - MIR SINE MIR -17 245 23 575 256 79 47 chr1 211708146 211708361 -70485303 + MIR SINE MIR 31 252 -10 2082 126 3 3 chr1 211708740 211709042 -70484622 - AluSq SINE Alu -11 302 1 4872 142 14 48 chr1 211709045 211709952 -70483712 - L1MB7 LINE L1 -8 6176 5301 397 298 111 49 chr1 211709983 211710208 -70483456 + MIR SINE MIR 8 246 -16 348 24 0 0 chr1 211710369 211710410 -70483254 + (CA)n Simple_repeat Simple_repeat 2 42 0 202 383 23 16 chr1 211710747 211710875 -70482789 + L2 LINE L2 2918 3046 -226 402 336 47 7 chr1 211710932 211711081 -70482583 - L2 LINE L2 -2 3270 3116 25 51 0 0 chr1 211711380 211711419 -70482245 + AT_rich Low_complexity Low_complexity 1 39 0 546 16 0 0 chr1 211711459 211711522 -70482142 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 1695 107 0 4 chr1 211711538 211711763 -70481901 - AluSg SINE Alu -27 283 60 295 280 10 30 chr1 211711840 211711940 -70481724 + MIR3 SINE MIR 103 200 -8 2024 95 73 4 chr1 211712306 211712580 -70481084 + AluSq SINE Alu 1 293 -20 661 239 68 0 chr1 211713074 211713250 -70480414 + MIR SINE MIR 74 261 -1 2189 103 3 0 chr1 211714008 211714326 -70479338 + AluSp SINE Alu 1 319 0 361 215 22 52 chr1 211714475 211714702 -70478962 - Charlie7 DNA MER1_type -4 2608 38 785 215 58 77 chr1 211714731 211715056 -70478608 + MER5C DNA MER1_type 5 323 -1 278 307 9 0 chr1 211715975 211716089 -70477575 - MIR SINE MIR -11 251 137 2295 104 7 7 chr1 211716096 211716405 -70477259 - AluSc SINE Alu 0 309 1 1235 162 4 81 chr1 211716411 211716683 -70476981 - L1MB3 LINE L1 0 6183 5933 503 242 16 0 chr1 211716702 211716826 -70476838 - MIR SINE MIR -110 152 27 492 18 0 0 chr1 211717046 211717103 -70476561 + (CA)n Simple_repeat Simple_repeat 2 58 0 209 348 113 32 chr1 211717109 211717330 -70476334 + MIR SINE MIR 13 251 -11 2397 176 29 4 chr1 211718018 211718473 -70475191 + L1MC1 LINE L1 5868 6333 0 1972 155 3 7 chr1 211718597 211718907 -70474757 - AluJb SINE Alu -3 309 1 2406 102 0 0 chr1 211720439 211720744 -70472920 - AluSx SINE Alu -7 305 1 343 308 73 56 chr1 211720788 211721022 -70472642 - MIR SINE MIR -16 246 9 269 222 32 0 chr1 211722100 211722163 -70471501 - L2 LINE L2 0 3313 3249 229 286 71 75 chr1 211722147 211722413 -70471251 + L2 LINE L2 2807 3071 -201 * 24 91 0 0 chr1 211722989 211723055 -70470609 + AT_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr1 211723464 211723486 -70470178 + AT_rich Low_complexity Low_complexity 1 22 0 279 302 10 21 chr1 211723753 211723849 -70469815 + L1MCb LINE L1 317 411 -5634 1553 242 63 56 chr1 211724034 211724903 -70468761 + L1MCb LINE L1 437 1313 -4887 1145 111 12 29 chr1 211724923 211724941 -70468723 + AluSq SINE Alu 120 137 -176 2013 140 7 7 chr1 211724941 211725234 -70468430 + AluSx SINE Alu 3 295 -17 1145 111 12 29 chr1 211725234 211725386 -70468278 + AluSq SINE Alu 137 287 -26 26 0 0 0 chr1 211725386 211725412 -70468252 + AT_rich Low_complexity Low_complexity 1 26 0 553 247 67 0 chr1 211725412 211725590 -70468074 + L1MCb LINE L1 2418 2607 -3957 1980 132 14 14 chr1 211725590 211725878 -70467786 + AluSx SINE Alu 1 288 -24 248 220 33 0 chr1 211725878 211725969 -70467695 + (TCTA)n Simple_repeat Simple_repeat 1 94 0 1103 201 14 50 chr1 211725997 211726034 -70467630 + L1MCb LINE L1 2628 2665 -3899 1809 181 0 0 chr1 211726034 211726327 -70467337 - AluJo SINE Alu -19 293 1 1103 201 14 50 chr1 211726327 211726568 -70467096 + L1MCb LINE L1 2665 2896 -3668 357 228 10 0 chr1 211727215 211727313 -70466351 - L1ME1 LINE L1 -1 6183 6070 329 304 60 0 chr1 211727740 211727908 -70465756 - L2 LINE L2 -556 2758 2581 1988 164 0 3 chr1 211728260 211728572 -70465092 + AluSx SINE Alu 1 311 -1 759 263 36 4 chr1 211728579 211728826 -70464838 - MIR SINE MIR 0 262 8 2093 145 132 5 chr1 211728844 211729223 -70464441 - MSTA LTR MaLR 0 428 2 8989 172 36 9 chr1 211729225 211730833 -70462831 - MSTA-int LTR MaLR 0 1651 1 2004 142 139 34 chr1 211730833 211731046 -70462618 - MSTA LTR MaLR 0 428 239 2204 123 3 0 chr1 211731046 211731347 -70462317 - AluSx SINE Alu -10 302 1 2004 142 139 34 chr1 211731347 211731520 -70462144 - MSTA LTR MaLR -189 239 1 1184 191 56 89 chr1 211731761 211732065 -70461599 + AluJo SINE Alu 5 298 -4 31 68 0 0 chr1 211733919 211733978 -70459686 + AT_rich Low_complexity Low_complexity 1 59 0 605 242 67 16 chr1 211734824 211735018 -70458646 - MIR SINE MIR 0 262 59 448 269 30 15 chr1 211735567 211735701 -70457963 + L2 LINE L2 3162 3297 -16 450 286 39 13 chr1 211736244 211736398 -70457266 + MIR SINE MIR 49 206 -56 1029 142 0 0 chr1 211736433 211736581 -70457083 + AluJb SINE Alu 133 280 -32 213 39 0 0 chr1 211736581 211736607 -70457057 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 4534 253 61 27 chr1 211737725 211739580 -70454084 + L2 LINE L2 1329 3240 -73 346 282 37 43 chr1 211739836 211739999 -70453665 - MIR SINE MIR -73 189 28 2222 109 0 0 chr1 211740122 211740416 -70453248 - AluSx SINE Alu -18 294 1 425 278 40 50 chr1 211740423 211740621 -70453043 - L2 LINE L2 -1 3312 3117 300 348 92 0 chr1 211740865 211741029 -70452635 + L3 LINE CR1 1305 1483 -94 185 267 0 0 chr1 211742257 211742302 -70451362 - MIR SINE MIR -65 197 153 4606 125 27 4 chr1 211742781 211743476 -70450188 + MER50 LTR ERV1 1 711 -23 1222 161 0 0 chr1 211743664 211743844 -70449820 + MER41E LTR ERV1 333 512 0 26530 47 1 1 chr1 211743862 211748640 -70445024 + L1PA5 LINE L1 1376 6151 -3 3461 100 19 8 chr1 211748640 211749171 -70444493 + LTR24B LTR ERV1 40 576 0 1878 125 99 0 chr1 211749520 211749792 -70443872 - AluSq SINE Alu -14 299 1 1137 300 30 36 chr1 211749816 211750282 -70443382 - MLT1K LTR MaLR 0 588 126 254 28 0 28 chr1 211751286 211751322 -70442342 + (CA)n Simple_repeat Simple_repeat 1 35 0 437 221 90 16 chr1 211752343 211752465 -70441199 + MIR SINE MIR 23 153 -109 2023 129 28 3 chr1 211752521 211752808 -70440856 + AluSq SINE Alu 1 294 -19 2239 123 0 0 chr1 211752819 211753111 -70440553 - AluSx SINE Alu -20 292 1 3087 161 10 15 chr1 211753686 211754294 -70439370 - L1 LINE L1 -1119 5027 4423 2061 143 0 0 chr1 211754300 211754594 -70439070 - AluSx SINE Alu -17 295 2 391 286 0 0 chr1 211754595 211754735 -70438929 - L1 LINE L1 -1995 4151 4012 469 318 44 12 chr1 211755184 211755386 -70438278 - MIR SINE MIR -12 250 44 290 239 92 46 chr1 211755651 211755781 -70437883 + MIR3 SINE MIR 63 198 -10 537 161 0 0 chr1 211756270 211756400 -70437264 + (TG)n Simple_repeat Simple_repeat 1 130 0 382 282 44 72 chr1 211756780 211756961 -70436703 + MIR3 SINE MIR 18 193 -15 710 261 53 57 chr1 211757027 211757272 -70436392 + MIR SINE MIR 19 262 0 271 332 53 45 chr1 211757330 211757574 -70436090 - MLT1I LTR MaLR -66 343 98 2265 151 83 2 chr1 211759040 211759437 -70434227 - MSTB1 LTR MaLR 0 432 4 426 301 77 32 chr1 211759644 211759800 -70433864 - MIR3 SINE MIR -4 204 42 2206 160 102 19 chr1 211759803 211760215 -70433449 - MER83 LTR ERV1 0 448 3 198 241 204 0 chr1 211760250 211760304 -70433360 - L2 LINE L2 0 3313 3249 225 315 0 0 chr1 211760452 211760506 -70433158 + (CA)n Simple_repeat Simple_repeat 1 54 0 534 307 71 21 chr1 211760525 211760763 -70432901 + MIR SINE MIR 3 252 -10 20748 51 48 2 chr1 211761646 211764401 -70429263 - L1P LINE L1 -3266 2880 1 303 28 0 0 chr1 211764466 211764502 -70429162 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 580 287 40 55 chr1 211764524 211764796 -70428868 - L2 LINE L2 -383 2931 2664 406 289 16 0 chr1 211764899 211765020 -70428644 + MER20 DNA MER1_type 96 218 -1 422 286 8 15 chr1 211767495 211767628 -70426036 - MIR3 SINE MIR -65 143 12 183 243 300 0 chr1 211767803 211767873 -70425791 - MIR SINE MIR -113 149 59 2482 74 0 3 chr1 211768630 211768926 -70424738 - AluY SINE Alu -16 295 1 219 283 9 88 chr1 211769132 211769245 -70424419 + L2 LINE L2 2932 3035 -237 326 288 79 29 chr1 211769949 211770088 -70423576 - L1MDa LINE L1 -4408 2132 1987 211 290 20 20 chr1 211770089 211770189 -70423475 + CT-rich Low_complexity Low_complexity 4 103 0 186 375 71 9 chr1 211770192 211770304 -70423360 - L2 LINE L2 -11 3261 3143 422 277 26 7 chr1 211770578 211770733 -70422931 - L1ME LINE L1 -394 5727 5570 227 295 32 32 chr1 211770962 211771057 -70422607 + L2 LINE L2 2850 2944 -328 1024 206 43 8 chr1 211771192 211771445 -70422219 + L1ME3A LINE L1 5688 5949 -221 339 299 92 49 chr1 211771520 211771704 -70421960 + L1ME3A LINE L1 5971 6162 -8 382 270 108 14 chr1 211772406 211772554 -70421110 + MIR SINE MIR 100 261 -1 221 154 0 26 chr1 211772710 211772749 -70420915 + GA-rich Low_complexity Low_complexity 2 39 0 428 296 138 54 chr1 211773343 211773640 -70420024 + MLT1H LTR MaLR 40 361 -188 565 288 86 70 chr1 211773797 211774110 -70419554 - L2 LINE L2 0 3272 2955 481 291 43 27 chr1 211774520 211774778 -70418886 + L2 LINE L2 2834 3095 -177 464 313 65 18 chr1 211775981 211776198 -70417466 + MIR SINE MIR 2 228 -34 216 97 0 0 chr1 211776297 211776328 -70417336 + (A)n Simple_repeat Simple_repeat 1 31 0 1216 162 0 47 chr1 211776349 211776584 -70417080 + AluJo SINE Alu 35 258 -54 538 282 116 33 chr1 211777913 211778154 -70415510 + L2 LINE L2 3011 3271 -1 30 27 0 0 chr1 211778631 211778668 -70414996 + AT_rich Low_complexity Low_complexity 1 37 0 355 198 128 0 chr1 211778845 211778931 -70414733 - MIR SINE MIR -96 166 70 238 143 24 0 chr1 211779215 211779257 -70414407 - MLT1J2 LTR MaLR -308 142 100 443 293 43 27 chr1 211779761 211779949 -70413715 + MIR SINE MIR 28 218 -44 235 293 69 26 chr1 211780009 211780125 -70413539 + MIR SINE MIR 20 140 -68 203 278 37 0 chr1 211780222 211780276 -70413388 - L2 LINE L2 -5 3267 3212 2417 106 0 0 chr1 211781148 211781460 -70412204 - AluSx SINE Alu 0 312 1 272 224 60 103 chr1 211782335 211782451 -70411213 + MIR3 SINE MIR 4 114 -94 229 343 20 10 chr1 211782571 211782670 -70410994 - MIR SINE MIR -118 144 45 350 280 148 37 chr1 211783144 211783333 -70410331 - MIR SINE MIR -12 250 41 324 299 0 0 chr1 211783533 211783610 -70410054 + MIR SINE MIR 8 84 -178 1724 195 48 11 chr1 211783797 211784172 -70409492 + MLT1B LTR MaLR 1 389 -1 477 315 84 14 chr1 211785178 211785689 -70407975 + L1MEc LINE L1 801 1292 -4913 313 194 0 45 chr1 211785702 211785769 -70407895 + L1MEc LINE L1 2250 2313 -4083 2159 131 3 3 chr1 211785847 211786153 -70407511 - AluSx SINE Alu -6 306 1 2184 128 8 22 chr1 211786273 211786631 -70407033 + L1PA16 LINE L1 5646 5998 -168 191 288 99 54 chr1 211786877 211786988 -70406676 + MER5B DNA MER1_type 1 116 -62 211 292 42 67 chr1 211787890 211788010 -70405654 - L2 LINE L2 -205 3108 2992 * 469 252 175 7 chr1 211787985 211788128 -70405536 - L2 LINE L2 -568 2746 2580 1680 219 62 38 chr1 211788141 211788593 -70405071 - MLT1D LTR MaLR -37 468 6 621 295 22 6 chr1 211788593 211788776 -70404888 - L2 LINE L2 -711 2603 2418 2395 90 6 13 chr1 211788779 211789090 -70404574 + AluSg SINE Alu 2 310 0 341 320 8 0 chr1 211789096 211789218 -70404446 + MIR SINE MIR 137 259 -3 923 219 58 76 chr1 211790129 211790458 -70403206 - MER5C DNA MER1_type -1 323 1 321 215 22 52 chr1 211790483 211790710 -70402954 + Charlie7 DNA MER1_type 38 2608 -4 564 215 19 6 chr1 211790978 211791136 -70402528 + GA-rich Low_complexity Low_complexity 1 160 0 2075 148 92 5 chr1 211791531 211791902 -70401762 - MER57A LTR ERV1 0 403 1 2287 118 0 0 chr1 211792796 211793100 -70400564 + AluSq SINE Alu 1 304 -9 280 279 13 0 chr1 211793239 211793318 -70400346 + MIR SINE MIR 183 262 0 185 167 24 24 chr1 211793315 211793357 -70400307 - L2 LINE L2 0 3313 3272 * 237 333 31 23 chr1 211793395 211793524 -70400140 - L2 LINE L2 -228 3044 2915 2474 64 0 3 chr1 211794665 211794962 -70398702 + AluY SINE Alu 1 296 -15 587 256 81 23 chr1 211795064 211795236 -70398428 + MIR SINE MIR 71 252 -10 458 283 49 45 chr1 211795605 211795753 -70397911 + L2 LINE L2 2922 3068 -245 1780 128 12 95 chr1 211795753 211796089 -70397575 - AluJo SINE Alu -4 308 1 458 283 49 45 chr1 211796089 211796244 -70397420 + L2 LINE L2 3068 3308 -5 304 262 48 29 chr1 211796421 211796524 -70397140 + L2 LINE L2 3168 3272 -41 191 288 99 54 chr1 211797382 211797493 -70396171 + MER5B DNA MER1_type 1 116 -62 211 292 42 67 chr1 211798395 211798515 -70395149 - L2 LINE L2 -205 3108 2992 * 482 245 175 7 chr1 211798490 211798633 -70395031 - L2 LINE L2 -568 2746 2580 1687 200 68 46 chr1 211798646 211799102 -70394562 - MLT1D LTR MaLR -37 468 3 1575 260 32 95 chr1 211799107 211799285 -70394379 - L2 LINE L2 -723 2591 2403 2457 92 7 0 chr1 211799285 211799589 -70394075 + AluSg SINE Alu 2 307 -3 1575 260 32 95 chr1 211799589 211800033 -70393631 - L2 LINE L2 -911 2403 2008 271 153 0 42 chr1 211800808 211800880 -70392784 + CT-rich Low_complexity Low_complexity 4 72 0 812 180 0 98 chr1 211800921 211801017 -70392647 - MER5B DNA MER1_type 0 178 109 2322 71 41 7 chr1 211801017 211801312 -70392352 - AluY SINE Alu -6 305 1 812 180 0 98 chr1 211801312 211801409 -70392255 - MER5B DNA MER1_type -69 109 4 611 241 41 26 chr1 211802098 211802293 -70391371 + L1ME LINE L1 5543 5740 -381 276 237 21 10 chr1 211802297 211802394 -70391270 + L1ME LINE L1 5788 5885 -236 1856 186 0 16 chr1 211802618 211802925 -70390739 + AluJo SINE Alu 1 302 -10 2389 101 0 3 chr1 211804006 211804313 -70389351 - AluSq SINE Alu -7 306 1 482 247 145 43 chr1 211804599 211804834 -70388830 - MLT1J LTR MaLR -252 259 1 2363 64 0 0 chr1 211804950 211805232 -70388432 + AluY SINE Alu 1 282 -29 268 354 28 28 chr1 211805368 211805549 -70388115 - L2 LINE L2 -1282 2032 1852 302 314 17 17 chr1 211805578 211805696 -70387968 + MER5B DNA MER1_type 3 120 -58 5306 62 11 33 chr1 211805776 211806482 -70387182 - LTR8 LTR ERV1 0 691 1 2070 209 70 2 chr1 211806827 211807397 -70386267 + L1 LINE L1 2973 3581 -2565 2352 86 0 3 chr1 211807399 211807691 -70385973 - AluSx SINE Alu -21 291 1 1019 118 0 0 chr1 211807734 211807869 -70385795 + FLAM_C SINE Alu 7 141 -2 296 190 0 140 chr1 211808710 211808751 -70384913 + MER81 DNA DNA 26 47 -67 2311 94 10 0 chr1 211808751 211809048 -70384616 - AluY SINE Alu -11 300 1 296 190 0 140 chr1 211809048 211809106 -70384558 + MER81 DNA DNA 47 111 -3 194 253 40 67 chr1 211809195 211809270 -70384394 - L3b LINE CR1 -99 1484 1412 281 184 0 0 chr1 211809596 211809645 -70384019 + MER69 DNA AcHobo 2478 2526 0 415 252 44 30 chr1 211810133 211810268 -70383396 - MIR SINE MIR -14 248 112 2082 86 9 98 chr1 211810291 211810616 -70383048 + AluSq SINE Alu 12 307 -6 201 160 60 0 chr1 211810668 211810718 -70382946 + (TCTCTG)n Simple_repeat Simple_repeat 5 57 0 183 42 0 0 chr1 211810860 211810884 -70382780 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 261 301 68 0 chr1 211812969 211813042 -70380622 + L2 LINE L2 3193 3270 -2 1465 88 0 119 chr1 211813384 211813468 -70380196 - MER30 DNA MER1_type 0 230 138 2287 123 0 0 chr1 211813468 211813768 -70379896 - AluSx SINE Alu -11 301 2 1465 88 0 119 chr1 211813768 211813857 -70379807 - MER30 DNA MER1_type -92 138 96 2556 68 3 3 chr1 211813857 211814166 -70379498 - AluSp SINE Alu -4 309 1 1465 88 0 119 chr1 211814166 211814252 -70379412 - MER30 DNA MER1_type -134 96 1 1205 135 36 50 chr1 211814304 211814526 -70379138 + MER20 DNA MER1_type 1 219 0 846 188 35 0 chr1 211815904 211816106 -70377558 + MER63 DNA MER1_type 853 1061 0 393 236 97 58 chr1 211818108 211818367 -70375297 - L1ME4a LINE L1 -4 6117 5849 514 297 89 15 chr1 211818739 211818941 -70374723 + MIR SINE MIR 18 234 -28 402 267 0 19 chr1 211818982 211819087 -70374577 + MIR SINE MIR 12 114 -148 1658 151 47 7 chr1 211819163 211819319 -70374345 - AluJb SINE Alu -23 289 116 222 91 0 0 chr1 211819319 211819352 -70374312 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1658 151 47 7 chr1 211819352 211819473 -70374191 - AluJb SINE Alu -196 116 1 683 205 137 0 chr1 211819564 211819725 -70373939 + MER5A DNA MER1_type 5 187 -2 475 321 81 18 chr1 211820044 211820265 -70373399 + MIR SINE MIR 8 242 -20 433 181 96 0 chr1 211821791 211821885 -70371779 + MLT1I LTR MaLR 307 409 0 222 336 53 9 chr1 211822595 211822708 -70370956 + MIR SINE MIR 76 193 -69 281 167 0 0 chr1 211823437 211823479 -70370185 + MIR SINE MIR 107 148 -60 827 293 14 0 chr1 211823479 211823701 -70369963 + MIR SINE MIR 3 227 -35 2189 117 0 3 chr1 211824008 211824299 -70369365 - AluSx SINE Alu -22 290 1 198 298 0 0 chr1 211824630 211824687 -70368977 + L2 LINE L2 3255 3311 -2 232 287 49 33 chr1 211824785 211824907 -70368757 + MIR SINE MIR 18 141 -67 24 0 0 0 chr1 211827242 211827266 -70366398 + AT_rich Low_complexity Low_complexity 1 24 0 2198 101 4 0 chr1 211827593 211827896 -70365768 + AluSg SINE Alu 1 304 0 1998 163 7 0 chr1 211828077 211828384 -70365280 - AluSx SINE Alu -3 309 1 3663 161 63 43 chr1 211828423 211828931 -70364733 - L1MC2 LINE L1 -5 6339 5805 2354 96 0 3 chr1 211828931 211829232 -70364432 - AluSq SINE Alu -13 300 1 3663 161 63 43 chr1 211829232 211829596 -70364068 - L1MC2 LINE L1 -539 5805 5450 2189 118 7 3 chr1 211829600 211829896 -70363768 - AluSx SINE Alu -15 297 1 3508 222 47 24 chr1 211830379 211830466 -70363198 + L1MD2 LINE L1 3526 3610 -2536 2444 71 7 0 chr1 211830466 211830763 -70362901 - AluSp SINE Alu -14 299 1 3508 222 47 24 chr1 211830763 211831639 -70362025 + L1MD2 LINE L1 3610 4511 -1635 180 0 0 0 chr1 211831850 211831870 -70361794 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1271 184 5 41 chr1 211831870 211832172 -70361492 + L1MD2 LINE L1 4508 4819 -1302 2385 97 0 13 chr1 211832172 211832483 -70361181 + AluSx SINE Alu 1 307 -5 1271 184 5 41 chr1 211832483 211832597 -70361067 + L1MD2 LINE L1 4819 5818 -303 772 143 8 8 chr1 211832630 211832749 -70360915 + FLAM_C SINE Alu 14 132 -11 513 254 58 17 chr1 211832768 211832941 -70360723 + L1MD2 LINE L1 5965 6144 -215 700 178 13 38 chr1 211832942 211833000 -70360664 + L1MD2 LINE L1 6195 6253 -106 1958 161 19 40 chr1 211833000 211833204 -70360460 + MLT1A1 LTR MaLR 1 195 -170 2330 97 0 26 chr1 211833204 211833513 -70360151 + AluSg SINE Alu 1 301 -9 1958 161 19 40 chr1 211833513 211833681 -70359983 + MLT1A1 LTR MaLR 195 365 0 700 178 13 38 chr1 211833681 211833779 -70359885 + L1MD2 LINE L1 6253 6347 -12 311 250 250 0 chr1 211833971 211834063 -70359601 - MER5A DNA MER1_type -2 187 73 654 149 124 12 chr1 211834119 211834280 -70359384 - MER96B DNA MER1_type? -238 179 1 304 314 0 0 chr1 211834280 211834350 -70359314 - MER5A DNA MER1_type -110 79 10 345 346 45 70 chr1 211835240 211835529 -70358135 - L2 LINE L2 -12 3260 2980 2473 156 31 87 chr1 211835529 211836118 -70357546 + MER74A LTR ERVL 3 558 0 345 346 45 70 chr1 211836118 211836186 -70357478 - L2 LINE L2 -292 2980 2912 535 286 17 70 chr1 211836404 211836645 -70357019 - MIR SINE MIR -12 250 23 2344 105 0 3 chr1 211838800 211839105 -70354559 - AluSq SINE Alu -9 304 1 517 175 39 0 chr1 211839186 211839289 -70354375 - MER81 DNA DNA 0 114 8 480 188 0 12 chr1 211839292 211839377 -70354287 + MLT1D LTR MaLR 5 88 -417 * 544 211 222 11 chr1 211839371 211839551 -70354113 + MLT1D LTR MaLR 288 505 0 366 249 124 65 chr1 211839874 211840043 -70353621 + MIR SINE MIR 51 229 -33 1885 145 24 7 chr1 211840388 211840532 -70353132 - AluSq SINE Alu -12 301 161 2201 114 0 0 chr1 211840532 211840812 -70352852 - AluSq SINE Alu -21 292 13 1885 145 24 7 chr1 211840812 211840963 -70352701 - AluSq SINE Alu -152 161 1 823 277 74 40 chr1 211841332 211841779 -70351885 + L1ME4a LINE L1 5436 5898 -223 427 306 88 14 chr1 211842017 211842106 -70351558 - L2 LINE L2 -473 2841 2760 1878 134 69 0 chr1 211842106 211842381 -70351283 - AluJo SINE Alu -18 294 1 427 306 88 14 chr1 211842381 211842507 -70351157 - L2 LINE L2 -554 2760 2610 217 258 15 45 chr1 211843157 211843223 -70350441 - L2 LINE L2 -1414 1900 1837 1197 196 23 0 chr1 211843626 211843840 -70349824 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chr1 211844804 211844842 -70348822 + (CA)n Simple_repeat Simple_repeat 2 39 0 2310 121 48 22 chr1 211844872 211845227 -70348437 + THE1B LTR MaLR 1 364 0 496 205 5 70 chr1 211845317 211845341 -70348323 - L1MC4 LINE L1 0 8042 8018 836 159 0 23 chr1 211845341 211845473 -70348191 - FLAM_A SINE Alu -4 129 1 496 205 5 70 chr1 211845473 211845633 -70348031 - L1MC4 LINE L1 -24 8018 7870 525 267 89 0 chr1 211845769 211845915 -70347749 + MIR SINE MIR 38 196 -66 2188 107 0 20 chr1 211846561 211846860 -70346804 - AluSx SINE Alu -19 293 1 363 292 185 31 chr1 211847299 211847624 -70346040 + L2 LINE L2 2893 3267 -5 854 244 0 0 chr1 211847793 211847958 -70345706 + AluJo SINE Alu 123 332 0 258 89 22 0 chr1 211847958 211848003 -70345661 + (CAAA)n Simple_repeat Simple_repeat 4 180 0 222 91 0 0 chr1 211848525 211848558 -70345106 + (TG)n Simple_repeat Simple_repeat 2 34 0 1921 120 4 0 chr1 211848612 211848879 -70344785 + AluSg1 SINE Alu 37 304 -5 923 74 0 0 chr1 211848879 211849000 -70344664 + L1PA7 LINE L1 6031 6151 -3 1281 154 72 38 chr1 211850356 211850648 -70343016 - AluJb SINE Alu -10 302 1 204 377 109 14 chr1 211850727 211850865 -70342799 - MIR3 SINE MIR -25 183 33 216 324 0 28 chr1 211850950 211851021 -70342643 - L2 LINE L2 -12 3260 3192 239 220 34 17 chr1 211851078 211851137 -70342527 - MIR SINE MIR -2 260 201 231 260 52 0 chr1 211851959 211852036 -70341628 - MIR SINE MIR -64 198 118 245 323 169 23 chr1 211852290 211852420 -70341244 - L2 LINE L2 -5 3267 3119 290 247 11 0 chr1 211852680 211852773 -70340891 + CT-rich Low_complexity Low_complexity 3 96 0 2066 88 14 10 chr1 211853397 211853692 -70339972 + AluSx SINE Alu 1 296 -16 279 200 33 17 chr1 211853816 211853876 -70339788 - MIR3 SINE MIR -40 168 108 224 347 20 0 chr1 211854045 211854143 -70339521 + MIR SINE MIR 53 152 -110 2104 115 26 3 chr1 211854535 211854839 -70338825 + AluSx SINE Alu 1 311 -1 1722 155 0 30 chr1 211854875 211855201 -70338463 - AluJb SINE Alu 0 312 1 907 271 96 38 chr1 211855854 211856016 -70337648 + L2 LINE L2 2193 2344 -970 2144 106 0 0 chr1 211856016 211856308 -70337356 - AluSx SINE Alu -20 292 1 907 271 96 38 chr1 211856308 211856540 -70337124 + L2 LINE L2 2344 2610 -704 470 295 140 55 chr1 211857520 211858018 -70335646 + L2 LINE L2 2737 3272 0 299 274 178 30 chr1 211858238 211858373 -70335291 - MIR3 SINE MIR -48 160 6 236 164 0 131 chr1 211858875 211858936 -70334728 + L2 LINE L2 3248 3300 -13 * 569 314 30 91 chr1 211858923 211859170 -70334494 - L2 LINE L2 -12 3301 3093 2226 115 0 0 chr1 211859170 211859475 -70334189 + AluSx SINE Alu 1 305 -7 569 314 30 91 chr1 211859475 211859688 -70333976 - L2 LINE L2 -220 3093 2869 297 280 259 0 chr1 211859715 211859951 -70333713 - L2 LINE L2 -543 2771 2475 318 26 0 0 chr1 211860100 211860139 -70333525 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2030 100 3 17 chr1 211860139 211860429 -70333235 - AluSx SINE Alu -26 286 1 195 42 0 0 chr1 211862310 211862334 -70331330 + (TG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr1 211862353 211862374 -70331290 + AT_rich Low_complexity Low_complexity 1 21 0 513 298 63 6 chr1 211862889 211863047 -70330617 - MIR3 SINE MIR -40 168 2 1125 250 13 0 chr1 211863125 211863357 -70330307 + MIR SINE MIR 11 245 -17 184 239 0 28 chr1 211864055 211864126 -70329538 + CT-rich Low_complexity Low_complexity 4 72 0 2090 109 16 0 chr1 211864852 211865156 -70328508 - AluSx SINE Alu -3 309 1 2303 148 152 5 chr1 211866365 211866805 -70326859 + MLT1D LTR MaLR 1 505 0 1950 130 0 7 chr1 211867144 211867436 -70326228 - AluSx SINE Alu -22 290 1 2208 95 17 0 chr1 211867583 211867879 -70325785 - AluSx SINE Alu -11 301 1 347 309 73 0 chr1 211868823 211868946 -70324718 + L2 LINE L2 3139 3270 -2 697 200 7 29 chr1 211869262 211869461 -70324203 + L1ME2 LINE L1 5265 5456 -708 452 150 70 30 chr1 211869478 211869578 -70324086 - L1MD2 LINE L1 -10 6349 6246 3053 219 43 6 chr1 211869581 211870278 -70323386 + L1ME2 LINE L1 5442 6164 0 201 283 10 91 chr1 211870473 211870572 -70323092 - MIR SINE MIR -77 185 95 180 0 0 0 chr1 211870639 211870659 -70323005 + (A)n Simple_repeat Simple_repeat 1 20 0 463 152 214 27 chr1 211871124 211871236 -70322428 + FLAM_A SINE Alu 1 133 0 253 289 11 56 chr1 211871398 211871488 -70322176 - MIR3 SINE MIR -23 185 100 258 296 133 22 chr1 211871527 211871662 -70322002 + MIR SINE MIR 47 196 -66 222 273 0 0 chr1 211871718 211871762 -70321902 - MIR SINE MIR -125 83 40 2361 82 0 0 chr1 211872185 211872490 -70321174 - AluY SINE Alu -6 305 1 273 279 124 59 chr1 211872588 211872783 -70320881 + MIR SINE MIR 16 228 -34 * 354 234 13 0 chr1 211872737 211872814 -70320850 - MIR SINE MIR -9 253 176 2209 106 0 3 chr1 211873416 211873717 -70319947 - AluSx SINE Alu -12 300 1 480 350 17 6 chr1 211874032 211874209 -70319455 - MIR SINE MIR -50 212 34 247 232 43 58 chr1 211874408 211874477 -70319187 + MIR SINE MIR 195 262 0 1431 165 58 52 chr1 211874489 211874798 -70318866 + AluJo SINE Alu 1 311 -1 318 26 0 0 chr1 211874816 211874855 -70318809 + (A)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr1 211875129 211875149 -70318515 + (T)n Simple_repeat Simple_repeat 1 20 0 809 152 0 0 chr1 211875315 211875440 -70318224 + FLAM_C SINE Alu 1 125 -18 1525 73 5 27 chr1 211875555 211875774 -70317890 + L1PA5 LINE L1 5938 6151 -3 3641 98 19 8 chr1 211875774 211876305 -70317359 + LTR24B LTR ERV1 40 576 0 1884 100 0 0 chr1 211876677 211876926 -70316738 - AluSq SINE Alu -64 249 1 2011 110 35 0 chr1 211877791 211878081 -70315583 - AluSx SINE Alu -12 300 1 1863 151 3 0 chr1 211878630 211878929 -70314735 + AluJb SINE Alu 1 300 -12 611 206 21 53 chr1 211878943 211879132 -70314532 + L1MC5 LINE L1 7744 7926 -35 862 308 69 26 chr1 211879887 211880339 -70313325 + L3 LINE CR1 1102 1572 -5 2330 96 0 0 chr1 211880504 211880805 -70312859 - AluSg SINE Alu -9 301 1 261 291 132 39 chr1 211881201 211881383 -70312281 - L2 LINE L2 0 3313 3115 226 206 135 85 chr1 211881822 211881877 -70311787 - MIR SINE MIR -43 219 168 1622 200 21 3 chr1 211881877 211882212 -70311452 - MER58B DNA MER1_type 0 341 1 226 206 135 85 chr1 211882212 211882297 -70311367 - MIR SINE MIR -94 168 72 808 147 0 16 chr1 211882764 211882893 -70310771 + FLAM_C SINE Alu 5 131 -2 21 0 0 0 chr1 211882893 211882914 -70310750 + AT_rich Low_complexity Low_complexity 1 21 0 1931 149 0 0 chr1 211883003 211883304 -70310360 - AluJo SINE Alu -11 301 1 1873 116 0 69 chr1 211883714 211884074 -70309590 + AluSx SINE Alu 1 312 0 254 180 0 0 chr1 211884437 211884487 -70309177 - FAM SINE Alu -3 176 127 1343 150 9 9 chr1 211884487 211884707 -70308957 - AluJo SINE Alu -92 220 1 1681 143 46 7 chr1 211885013 211885293 -70308371 - AluSx SINE Alu -21 291 1 1321 250 78 73 chr1 211885293 211885909 -70307755 - L2 LINE L2 -10 3303 2685 2221 96 0 0 chr1 211885909 211886212 -70307452 - AluY SINE Alu -8 303 1 1321 250 78 73 chr1 211886212 211886472 -70307192 - L2 LINE L2 -628 2685 2428 392 168 25 0 chr1 211886998 211887074 -70306590 - FRAM/FAM SINE Alu -100 75 18 2571 39 0 3 chr1 211887284 211887596 -70306068 - AluY SINE Alu 0 311 1 482 196 0 19 chr1 211887875 211887982 -70305682 + FRAM SINE Alu 71 175 -1 21 0 0 0 chr1 211888621 211888642 -70305022 + AT_rich Low_complexity Low_complexity 1 21 0 1394 191 3 24 chr1 211888679 211888972 -70304692 - AluJb SINE Alu -25 287 1 329 240 138 24 chr1 211889253 211889413 -70304251 + MIR SINE MIR 36 209 -53 22 0 0 0 chr1 211889438 211889460 -70304204 + AT_rich Low_complexity Low_complexity 1 22 0 272 297 43 65 chr1 211889668 211889853 -70303811 - L3b LINE CR1 -148 1435 1255 209 269 0 0 chr1 211891029 211891081 -70302583 + (CA)n Simple_repeat Simple_repeat 2 53 0 2230 81 7 16 chr1 211892739 211893047 -70300617 + AluSg SINE Alu 2 306 -4 789 285 207 36 chr1 211893093 211893764 -70299900 - L2 LINE L2 -7 3306 2524 1813 169 3 3 chr1 211893889 211894197 -70299467 - AluJo SINE Alu -4 308 1 1071 302 99 9 chr1 211894574 211895134 -70298530 - L2 LINE L2 -11 3302 2694 529 254 15 8 chr1 211895138 211895272 -70298392 - L2 LINE L2 -1061 2253 2119 724 286 49 4 chr1 211895278 211895523 -70298141 - MIR SINE MIR 0 262 7 317 252 158 16 chr1 211895544 211895671 -70297993 + MIR SINE MIR 113 257 -5 1584 139 111 21 chr1 211895739 211895820 -70297844 + MLT1A1 LTR MaLR 1 73 -292 2238 135 87 20 chr1 211895820 211896221 -70297443 + MSTA LTR MaLR 1 428 0 1584 139 111 21 chr1 211896221 211896427 -70297237 + MLT1A1 LTR MaLR 73 314 -51 358 214 0 45 chr1 211896419 211896508 -70297156 + MLT1K LTR MaLR 456 540 -48 * 1854 128 7 0 chr1 211896829 211897103 -70296561 + AluSx SINE Alu 1 276 -36 294 29 0 0 chr1 211897110 211897145 -70296519 + (TAAAA)n Simple_repeat Simple_repeat 5 39 0 727 179 0 8 chr1 211897949 211898072 -70295592 - FLAM_C SINE Alu -7 126 5 2012 136 0 0 chr1 211898818 211899126 -70294538 - AluSx SINE Alu -4 308 1 1238 303 30 36 chr1 211899150 211899616 -70294048 - MLT1K LTR MaLR 0 588 126 1525 126 84 18 chr1 211900776 211901110 -70292554 + SVA Other Other 458 813 -573 4960 117 57 44 chr1 211901534 211902485 -70291179 + SVA Other Other 458 1386 0 649 313 178 22 chr1 211902538 211902692 -70290972 + L2 LINE L2 2523 2651 -621 2102 156 88 3 chr1 211902692 211903057 -70290607 + MSTD LTR MaLR 1 396 0 649 313 178 22 chr1 211903057 211903397 -70290267 + L2 LINE L2 2651 3082 -190 701 284 65 0 chr1 211903487 211903688 -70289976 - MIR SINE MIR -7 255 42 510 245 19 0 chr1 211903723 211903829 -70289835 + L2 LINE L2 3203 3310 -3 1731 171 0 17 chr1 211903921 211904219 -70289445 + AluSx SINE Alu 1 293 -19 231 174 0 65 chr1 211904446 211904492 -70289172 + MLT1J LTR MaLR 93 135 -376 255 259 0 37 chr1 211904783 211904864 -70288800 + LTR33A LTR ERVL 446 523 0 260 319 97 65 chr1 211905187 211905435 -70288229 - MIR SINE MIR -2 260 5 2140 110 7 0 chr1 211905759 211906058 -70287606 + AluSp SINE Alu 1 301 -12 1955 141 3 0 chr1 211907309 211907600 -70286064 + AluSx SINE Alu 1 292 -20 1879 129 28 3 chr1 211907611 211907898 -70285766 - AluSq SINE Alu -19 294 1 437 221 90 16 chr1 211907954 211908076 -70285588 - MIR SINE MIR -109 153 23 254 28 0 28 chr1 211959092 211959128 -70234536 + (TG)n Simple_repeat Simple_repeat 1 35 0 416 220 152 63 chr1 211960085 211960292 -70233372 + MLT1L LTR MaLR 63 390 -225 887 189 7 0 chr1 211960500 211960653 -70233011 - AluJo SINE Alu -24 288 135 1644 68 8 30 chr1 211960674 211960908 -70232756 + L1PA14 LINE L1 5927 6155 -6 644 186 32 8 chr1 211960920 211961044 -70232620 - AluJo SINE Alu -175 127 1 21 36 0 0 chr1 211961569 211961597 -70232067 + AT_rich Low_complexity Low_complexity 1 28 0 321 158 74 32 chr1 211962007 211962102 -70231562 + L1MCb LINE L1 985 1083 -4962 459 217 7 66 chr1 211962119 211962184 -70231480 + L1MD3 LINE L1 4791 4858 -1288 2297 75 0 30 chr1 211962184 211962489 -70231175 - AluY SINE Alu -15 296 1 459 217 7 66 chr1 211962489 211962575 -70231089 + L1MD3 LINE L1 4858 4933 -1213 514 162 28 28 chr1 211962578 211962720 -70230944 + GA-rich Low_complexity Low_complexity 3 144 0 4068 210 57 44 chr1 211962739 211964319 -70229345 + L1MD3 LINE L1 4964 5397 -749 405 0 0 0 chr1 211964347 211964392 -70229272 + (TG)n Simple_repeat Simple_repeat 2 46 0 580 296 69 25 chr1 211964392 211964669 -70228995 - MER68 LTR ERV1 -273 289 1 3039 172 120 94 chr1 211964669 211964747 -70228917 + L1MD3 LINE L1 6895 6969 -1026 192 111 0 0 chr1 211964747 211964783 -70228881 + (TA)n Simple_repeat Simple_repeat 1 36 0 3039 172 120 94 chr1 211964783 211964823 -70228841 + L1MD3 LINE L1 6969 7006 -989 189 107 0 0 chr1 211964823 211964851 -70228813 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 3039 172 120 94 chr1 211964851 211965058 -70228606 + L1MD3 LINE L1 7006 7206 -789 325 233 0 0 chr1 211965058 211965131 -70228533 + MLT1F1 LTR MaLR 1 73 -494 3039 172 120 94 chr1 211965131 211965804 -70227860 + L1MD3 LINE L1 7206 7995 0 1426 164 82 4 chr1 211965968 211966236 -70227428 - MLT1A1 LTR MaLR 0 365 77 466 190 49 79 chr1 211966236 211966426 -70227238 - LTR45B LTR ERV1 0 525 305 21 36 0 0 chr1 211966624 211966652 -70227012 + AT_rich Low_complexity Low_complexity 1 28 0 374 169 0 48 chr1 211966766 211966849 -70226815 - MLT1A1 LTR MaLR -286 79 1 207 0 0 0 chr1 211967272 211967295 -70226369 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 224 197 53 13 chr1 211968504 211968580 -70225084 + (TTATA)n Simple_repeat Simple_repeat 5 83 0 302 280 107 7 chr1 211969817 211969967 -70223697 - MER103 DNA DNA 0 166 2 454 245 68 50 chr1 211970957 211971279 -70222385 - L1MC4a LINE L1 -1785 6023 5696 326 307 86 0 chr1 211971313 211971476 -70222188 - L1MC4a LINE L1 -2186 5622 5446 297 0 0 0 chr1 211971481 211971514 -70222150 + (TG)n Simple_repeat Simple_repeat 2 34 0 2270 87 0 3 chr1 211971644 211971944 -70221720 + AluY SINE Alu 1 299 -12 198 372 13 32 chr1 211972204 211972360 -70221304 + L2 LINE L2 749 901 -2413 1098 277 158 24 chr1 211973412 211973734 -70219930 + L2 LINE L2 2368 2646 -667 2181 145 33 22 chr1 211973734 211974093 -70219571 + THE1B LTR MaLR 1 363 -1 1098 277 158 24 chr1 211974093 211974577 -70219087 + L2 LINE L2 2646 3313 0 332 268 151 15 chr1 211974630 211974850 -70218814 - L1MC/D LINE L1 -721 5584 5383 595 275 42 15 chr1 211974859 211975194 -70218470 - L1MC/D LINE L1 -822 5324 4981 1168 196 18 5 chr1 211975198 211975422 -70218242 + Charlie1 DNA MER1_type 1 227 -2534 771 118 28 56 chr1 211975418 211975518 -70218146 + Charlie1 DNA MER1_type 2622 2718 -43 * 2226 97 7 0 chr1 211975518 211975806 -70217858 + AluSp SINE Alu 1 290 -23 771 118 28 56 chr1 211975806 211975849 -70217815 + Charlie1 DNA MER1_type 2718 2761 0 1152 288 124 46 chr1 211976072 211977581 -70216083 - L1MC/D LINE L1 -1443 4703 3013 2358 108 0 6 chr1 211977581 211977895 -70215769 - AluSx SINE Alu 0 312 1 1152 288 124 46 chr1 211977895 211978287 -70215377 - L1MC/D LINE L1 -3133 3013 2653 1446 149 5 14 chr1 211978500 211978722 -70214942 + AluJo SINE Alu 1 220 -92 2073 228 78 29 chr1 211978812 211979374 -70214290 + MLT1G LTR MaLR 1 590 0 422 279 0 46 chr1 211979538 211979616 -70214048 + HAL1 LINE L1 1415 1495 -1012 2401 75 0 0 chr1 211979616 211979908 -70213756 + AluSg SINE Alu 1 292 -18 422 279 0 46 chr1 211979908 211980026 -70213638 + HAL1 LINE L1 1495 1602 -905 2196 63 0 28 chr1 211980356 211980671 -70212993 + AluY SINE Alu 2 308 0 1860 144 0 4 chr1 211980897 211981175 -70212489 + AluSx SINE Alu 24 300 -12 275 276 65 20 chr1 211981236 211981482 -70212182 + L1M4 LINE L1 2156 2412 -3734 589 244 16 0 chr1 211981595 211981718 -70211946 - FLAM_A SINE Alu -7 126 2 2306 102 3 0 chr1 211982281 211982584 -70211080 - AluSx SINE Alu -8 304 1 28 0 0 0 chr1 211982640 211982668 -70210996 + AT_rich Low_complexity Low_complexity 1 28 0 1903 138 17 14 chr1 211983212 211983373 -70210291 - AluJo SINE Alu -15 297 138 198 0 0 0 chr1 211983373 211983395 -70210269 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2178 91 0 14 chr1 211983395 211983682 -70209982 - AluSx SINE Alu -29 283 1 1903 138 17 14 chr1 211983682 211983815 -70209849 - AluJo SINE Alu -173 139 1 386 274 203 15 chr1 211983933 211984199 -70209465 + L2 LINE L2 2201 2516 -798 2046 146 3 16 chr1 211984290 211984605 -70209059 + AluJb SINE Alu 1 311 -1 2039 150 3 7 chr1 211984728 211985035 -70208629 + AluSx SINE Alu 5 310 -2 222 37 0 0 chr1 211985154 211985181 -70208483 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 280 100 0 0 chr1 211985249 211985289 -70208375 + U2 snRNA snRNA 1 40 -148 1345 167 4 37 chr1 211985345 211985590 -70208074 - AluJb SINE Alu -17 295 59 216 273 18 36 chr1 211985897 211986007 -70207657 + CT-rich Low_complexity Low_complexity 3 110 0 1167 126 12 0 chr1 211986470 211986637 -70207027 - AluSg/x SINE Alu -7 305 137 218 348 139 0 chr1 211987165 211987280 -70206384 + L2 LINE L2 3104 3234 -38 1834 171 0 0 chr1 211987725 211988039 -70205625 + AluJb SINE Alu 5 318 0 1576 160 41 31 chr1 211988336 211988629 -70205035 + AluJb SINE Alu 1 296 -16 198 118 0 0 chr1 211988653 211988687 -70204977 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 380 90 0 30 chr1 211988687 211988754 -70204910 + (GGGGA)n Simple_repeat Simple_repeat 4 68 0 229 132 19 19 chr1 211988755 211988808 -70204856 + GA-rich Low_complexity Low_complexity 3 55 0 197 258 129 0 chr1 211988954 211989016 -70204648 - MIR SINE MIR -10 252 183 21 57 0 0 chr1 211989360 211989395 -70204269 + AT_rich Low_complexity Low_complexity 1 35 0 935 115 8 0 chr1 211989627 211989757 -70203907 - FLAM_C SINE Alu -1 132 2 558 322 78 65 chr1 211989792 211990344 -70203320 - L2 LINE L2 0 3272 2726 707 183 8 0 chr1 211990462 211990582 -70203082 - FLAM_A SINE Alu -12 121 1 2027 134 16 3 chr1 211990607 211990914 -70202750 + AluJo SINE Alu 1 311 -1 1751 134 55 68 chr1 211991178 211991558 -70202106 - THE1C LTR MaLR 0 375 1 598 222 0 44 chr1 211992955 211993090 -70200574 + FLAM_A SINE Alu 1 129 -4 2230 131 3 0 chr1 211993178 211993484 -70200180 + AluSx SINE Alu 1 307 -5 391 342 33 0 chr1 211994174 211994294 -70199370 + L2 LINE L2 3186 3309 -4 22 35 0 0 chr1 211994547 211994576 -70199088 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr1 211995026 211995051 -70198613 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 258 224 0 40 chr1 211996771 211996847 -70196817 + C-rich Low_complexity Low_complexity 6 78 0 332 303 89 87 chr1 211997023 211997459 -70196205 - L1M2 LINE L1 -5886 963 527 2297 69 0 3 chr1 211998735 211999051 -70194613 + AluSq SINE Alu 2 313 0 199 323 115 0 chr1 211999160 211999256 -70194408 - L2 LINE L2 -20 3293 3187 432 277 77 15 chr1 211999450 211999580 -70194084 - MIR3 SINE MIR -40 168 31 415 273 215 39 chr1 211999608 211999868 -70193796 - L2 LINE L2 0 3313 3008 249 108 0 0 chr1 212001852 212001889 -70191775 + (TG)n Simple_repeat Simple_repeat 2 38 0 233 286 24 0 chr1 212001920 212002004 -70191660 + L1MC4 LINE L1 6615 6700 -1342 486 300 0 0 chr1 212002014 212002194 -70191470 + (TA)n Simple_repeat Simple_repeat 1 180 0 253 234 0 0 chr1 212002195 212002242 -70191422 + (TATG)n Simple_repeat Simple_repeat 1 47 0 234 182 36 0 chr1 212002242 212002297 -70191367 + L1MC4 LINE L1 6649 6705 -1337 1214 173 28 5 chr1 212003701 212003915 -70189749 - MER20 DNA MER1_type 0 219 1 185 342 43 8 chr1 212004250 212004367 -70189297 - L2 LINE L2 -248 3065 2945 284 283 186 11 chr1 212005304 212005442 -70188222 + MIR SINE MIR 46 203 -19 261 265 124 124 chr1 212006029 212006281 -70187383 - L2 LINE L2 -15 3257 3003 585 155 0 128 chr1 212006281 212006429 -70187235 - FLAM_C SINE Alu 0 133 5 261 265 124 124 chr1 212006429 212006538 -70187126 - L2 LINE L2 -268 3004 2896 1348 148 104 38 chr1 212006964 212007282 -70186382 + MER44D DNA MER2_type 1 609 0 201 300 200 0 chr1 212008458 212008538 -70185126 + MIR SINE MIR 47 142 -120 1019 209 152 10 chr1 212008589 212008885 -70184779 + MER2 DNA MER2_type 7 344 -1 22 0 0 0 chr1 212009234 212009256 -70184408 + AT_rich Low_complexity Low_complexity 1 22 0 343 277 261 16 chr1 212009475 212009659 -70184005 - MIR SINE MIR 0 262 34 28 86 0 0 chr1 212009705 212009775 -70183889 + AT_rich Low_complexity Low_complexity 1 70 0 2124 113 0 0 chr1 212010870 212011162 -70182502 - AluSg SINE Alu -18 292 1 1185 137 43 28 chr1 212011162 212011373 -70182291 - AluJb SINE Alu -16 296 83 685 266 209 34 chr1 212011440 212011518 -70182146 - LTR67 LTR ERVL -12 545 482 1994 182 104 13 chr1 212011518 212011980 -70181684 - MLT1D LTR MaLR -1 504 1 685 266 209 34 chr1 212011980 212012341 -70181323 - LTR67 LTR ERVL -75 482 29 480 161 69 0 chr1 212012741 212012828 -70180836 - MER3 DNA MER1_type 0 209 117 662 190 183 0 chr1 212012929 212013066 -70180598 - MER3 DNA MER1_type 0 209 48 2260 100 13 0 chr1 212013136 212013437 -70180227 - AluSx SINE Alu -7 305 1 804 199 0 0 chr1 212014356 212014492 -70179172 + MER5A DNA MER1_type 1 136 -53 1209 218 55 96 chr1 212015129 212015254 -70178410 - L1ME2 LINE L1 -26 6374 6245 1864 124 67 0 chr1 212015254 212015521 -70178143 - AluSx SINE Alu -27 285 1 1209 218 55 96 chr1 212015521 212015905 -70177759 - L1ME2 LINE L1 -155 6245 5886 269 309 21 0 chr1 212015926 212016023 -70177641 + (TA)n Simple_repeat Simple_repeat 1 99 0 1621 206 87 89 chr1 212016023 212016167 -70177497 - L1ME2 LINE L1 -925 5457 5314 1389 189 12 118 chr1 212016167 212016575 -70177089 - MLT1A1 LTR MaLR 0 365 1 1621 206 87 89 chr1 212016575 212017096 -70176568 - L1ME2 LINE L1 -1068 5314 4793 * 1669 206 81 72 chr1 212017092 212017417 -70176247 - L1ME2 LINE L1 -2918 3464 3143 1679 197 3 19 chr1 212017417 212017727 -70175937 - AluJo SINE Alu -6 306 2 1669 206 81 72 chr1 212017727 212018029 -70175635 - L1ME2 LINE L1 -3239 3143 2828 2064 132 7 0 chr1 212018029 212018333 -70175331 - AluSx SINE Alu -6 306 1 1669 206 81 72 chr1 212018333 212018422 -70175242 - L1ME2 LINE L1 -3554 2828 2741 1102 173 0 5 chr1 212018432 212018623 -70175041 - AluJb SINE Alu -3 309 120 1005 286 60 49 chr1 212018649 212019199 -70174465 - L1ME2 LINE L1 -4329 2234 1679 669 75 0 0 chr1 212019211 212019304 -70174360 - AluSg/x SINE Alu -3 306 214 2112 95 4 0 chr1 212019306 212019580 -70174084 - AluSg SINE Alu -35 275 1 286 228 64 11 chr1 212019620 212019746 -70173918 - L1ME2 LINE L1 -4831 1449 1337 2057 125 7 0 chr1 212020042 212020337 -70173327 + AluSg SINE Alu 1 297 -13 477 296 71 9 chr1 212020434 212020606 -70173058 + MIR SINE MIR 14 188 -36 1056 237 94 40 chr1 212020952 212021177 -70172487 + L2 LINE L2 1882 2136 -1178 1462 126 36 5 chr1 212021177 212021399 -70172265 + MER30 DNA MER1_type 1 229 -1 1056 237 94 40 chr1 212021399 212021545 -70172119 + L2 LINE L2 2136 2273 -1041 2160 100 0 7 chr1 212022013 212022323 -70171341 - AluSg SINE Alu -2 308 1 1548 178 87 0 chr1 212022702 212022978 -70170686 + AluJb SINE Alu 1 300 -12 2020 125 18 15 chr1 212023049 212023386 -70170278 - L1MC1 LINE L1 -12 6321 5984 1584 143 48 0 chr1 212023487 212023804 -70169860 - L1MC1 LINE L1 -745 5401 5202 414 207 0 0 chr1 212024003 212024085 -70169579 + MER20B DNA MER1_type 506 587 -196 315 261 0 0 chr1 212025205 212025274 -70168390 + MIR SINE MIR 119 187 -75 1088 202 74 4 chr1 212025295 212025538 -70168126 - MIR SINE MIR 0 262 3 260 365 52 0 chr1 212025786 212025882 -70167782 + L2 LINE L2 3136 3236 -36 940 224 40 9 chr1 212027158 212027381 -70166283 + MIR SINE MIR 15 244 -18 259 278 24 71 chr1 212027732 212027858 -70165806 - 7SK RNA RNA -66 127 8 319 333 128 0 chr1 212027905 212028046 -70165618 - MIR SINE MIR -70 192 34 208 271 17 17 chr1 212028113 212028172 -70165492 - L2 LINE L2 -8 3305 3247 2134 103 7 0 chr1 212028450 212028768 -70164896 - AluSq SINE Alu 0 320 1 28 0 0 0 chr1 212029137 212029165 -70164499 + AT_rich Low_complexity Low_complexity 1 28 0 300 359 135 16 chr1 212029374 212029753 -70163911 + L2 LINE L2 1876 2299 -1015 230 264 0 99 chr1 212029758 212029849 -70163815 - L2 LINE L2 0 3313 3232 221 393 32 46 chr1 212030032 212030251 -70163413 + L2 LINE L2 2690 2905 -409 2231 115 7 0 chr1 212031002 212031306 -70162358 - AluSx SINE Alu -6 306 1 599 225 188 28 chr1 212031563 212031781 -70161883 + MIR SINE MIR 6 258 -4 1783 173 10 3 chr1 212032320 212032621 -70161043 - AluJo SINE Alu -9 303 1 925 159 53 6 chr1 212033138 212033308 -70160356 - MER58A DNA MER1_type 0 224 47 370 264 61 0 chr1 212033574 212033685 -70159979 + MIR SINE MIR 61 178 -67 415 123 27 27 chr1 212034815 212034888 -70158776 - MADE1 DNA Mariner 0 80 8 22 56 0 0 chr1 212034902 212034938 -70158726 + AT_rich Low_complexity Low_complexity 1 36 0 1227 68 0 0 chr1 212034987 212035134 -70158530 + AluY SINE Alu 149 295 -16 796 131 0 51 chr1 212035145 212035282 -70158382 + FLAM_A SINE Alu 1 130 -3 674 309 126 46 chr1 212035497 212036160 -70157504 - L2 LINE L2 -214 3058 2338 304 279 210 52 chr1 212036162 212036638 -70157026 - L2 LINE L2 -1518 1796 1246 180 0 0 0 chr1 212036938 212036958 -70156706 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 212037028 212037050 -70156614 + AT_rich Low_complexity Low_complexity 1 22 0 2294 110 0 0 chr1 212037499 212037799 -70155865 - AluSg SINE Alu -10 300 1 2171 117 0 0 chr1 212037957 212038256 -70155408 + AluSx SINE Alu 6 304 -8 1711 173 3 7 chr1 212042310 212042605 -70151059 - AluJb SINE Alu -18 294 1 1048 140 4 2 chr1 212043323 212043560 -70150104 + AluJb SINE Alu 2 293 -19 21 0 0 0 chr1 212043677 212043698 -70149966 + AT_rich Low_complexity Low_complexity 1 21 0 347 340 38 0 chr1 212043785 212043891 -70149773 - L2 LINE L2 0 3313 3204 302 283 283 0 chr1 212043939 212044126 -70149538 - L1ME4a LINE L1 0 6121 5882 24 0 0 0 chr1 212044746 212044770 -70148894 + AT_rich Low_complexity Low_complexity 1 24 0 2106 92 0 83 chr1 212045533 212045860 -70147804 - AluSx SINE Alu -12 300 1 304 255 14 103 chr1 212045993 212046058 -70147606 - L2 LINE L2 -497 2817 2770 1683 154 79 4 chr1 212046058 212046338 -70147326 + AluJb SINE Alu 1 301 -11 304 255 14 103 chr1 212046338 212046417 -70147247 - L2 LINE L2 -544 2770 2686 625 259 330 13 chr1 212046483 212046958 -70146706 - L2 LINE L2 -801 2513 1888 413 287 54 0 chr1 212046964 212047131 -70146533 + MER104 DNA Tc2 1 176 -4 216 293 35 0 chr1 212047131 212047189 -70146475 - L2 LINE L2 -1432 1882 1823 967 186 55 14 chr1 212047227 212047447 -70146217 - AluJo SINE Alu -2 310 82 379 253 127 25 chr1 212047739 212047897 -70145767 + MIR3 SINE MIR 34 207 -1 213 132 0 0 chr1 212048399 212048437 -70145227 + (TA)n Simple_repeat Simple_repeat 2 39 0 1397 154 9 118 chr1 212048543 212048881 -70144783 - AluJo SINE Alu -1 301 1 186 189 0 0 chr1 212049343 212049380 -70144284 + CT-rich Low_complexity Low_complexity 1 37 0 187 276 134 100 chr1 212049653 212050004 -70143660 - L2 LINE L2 -1231 2083 1721 180 0 0 0 chr1 212050598 212050618 -70143046 + (TA)n Simple_repeat Simple_repeat 2 21 0 2109 95 7 17 chr1 212050618 212050914 -70142750 - AluSx SINE Alu -19 293 1 34 0 0 0 chr1 212052675 212052709 -70140955 + AT_rich Low_complexity Low_complexity 1 34 0 626 195 17 8 chr1 212053005 212053123 -70140541 + MER58B DNA MER1_type 198 316 -25 192 322 91 33 chr1 212055001 212055122 -70138542 + L3 LINE CR1 1201 1328 -249 380 289 86 13 chr1 212055148 212055300 -70138364 + L3b LINE CR1 1413 1575 -8 424 246 55 18 chr1 212055976 212056086 -70137578 - L2 LINE L2 -5 3308 3195 1898 102 74 25 chr1 212059039 212059324 -70134340 + AluSx SINE Alu 1 299 -13 798 247 201 12 chr1 212061986 212062330 -70131334 - L1ME4a LINE L1 -17 6104 5696 411 275 191 0 chr1 212062377 212062508 -70131156 - MER5A DNA MER1_type -3 186 31 459 310 170 45 chr1 212063103 212063357 -70130307 + L2 LINE L2 1542 1763 -1551 1960 83 0 26 chr1 212063357 212063622 -70130042 + AluY SINE Alu 34 291 -20 459 310 170 45 chr1 212063622 212064209 -70129455 + L2 LINE L2 1763 2488 -826 250 344 136 60 chr1 212064495 212064864 -70128800 + L2 LINE L2 2836 3232 -40 22 0 0 0 chr1 212065029 212065051 -70128613 + AT_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chr1 212067386 212067433 -70126231 + (TG)n Simple_repeat Simple_repeat 2 48 0 793 192 0 0 chr1 212074706 212074831 -70118833 - FLAM_A SINE Alu -8 125 1 1751 149 99 22 chr1 212079471 212079794 -70113870 + MER7A DNA MER2_type 1 346 0 569 230 137 9 chr1 212080196 212080376 -70113288 - L1ME3A LINE L1 0 6166 5977 1714 156 18 0 chr1 212081026 212081301 -70112363 - AluJb SINE Alu -32 280 1 21 0 0 0 chr1 212081486 212081507 -70112157 + AT_rich Low_complexity Low_complexity 1 21 0 238 303 249 11 chr1 212081518 212081703 -70111961 - MIR SINE MIR -20 242 14 442 194 61 10 chr1 212081753 212081851 -70111813 - MER5B DNA MER1_type -55 123 21 235 250 0 0 chr1 212081944 212081996 -70111668 + MER5A DNA MER1_type 137 188 -1 2024 147 3 0 chr1 212082411 212082703 -70110961 - AluSx SINE Alu -19 293 1 2168 141 0 0 chr1 212082785 212083097 -70110567 - AluSx SINE Alu 0 312 1 2209 109 7 0 chr1 212083099 212083393 -70110271 - AluSx SINE Alu -16 296 1 672 138 110 14 chr1 212083576 212083721 -70109943 + MER5A DNA MER1_type 3 161 -28 616 178 9 19 chr1 212083734 212083841 -70109823 - FLAM_A SINE Alu -21 121 16 2243 122 0 0 chr1 212084106 212084410 -70109254 + AluSx SINE Alu 1 304 -8 1797 128 109 32 chr1 212084981 212085293 -70108371 - MER1B DNA MER1_type -3 336 1 191 225 70 84 chr1 212085340 212085411 -70108253 - MIR SINE MIR -67 195 126 735 209 34 14 chr1 212085454 212085602 -70108062 + MER5A DNA MER1_type 39 189 0 354 297 10 0 chr1 212085879 212085993 -70107671 + MIR SINE MIR 35 148 -62 228 206 147 0 chr1 212086020 212086088 -70107576 - MIR SINE MIR 0 262 185 186 103 0 0 chr1 212086146 212086175 -70107489 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 933 98 0 8 chr1 212086177 212086299 -70107365 - AluSq/x SINE Alu -179 133 13 1588 103 24 0 chr1 212086318 212086531 -70107133 - AluSg/x SINE Alu 0 310 93 376 137 5 0 chr1 212086531 212086589 -70107075 - Alu SINE Alu -251 52 3 22 0 0 0 chr1 212086756 212086778 -70106886 + AT_rich Low_complexity Low_complexity 1 22 0 2085 102 33 0 chr1 212087097 212087372 -70106292 + AluSg SINE Alu 15 298 -12 310 255 53 43 chr1 212087583 212087677 -70105987 + L2 LINE L2 3168 3262 -10 213 216 157 0 chr1 212088264 212088315 -70105349 - L3b LINE CR1 -27 1556 1498 201 102 82 20 chr1 212088987 212089036 -70104628 + (CTAAT)n Simple_repeat Simple_repeat 2 53 0 323 296 61 23 chr1 212089099 212089231 -70104433 + MER5B DNA MER1_type 8 144 -34 620 272 99 9 chr1 212089281 212089605 -70104059 + L1MC4 LINE L1 7690 8042 0 290 285 278 11 chr1 212089690 212089953 -70103711 - L3 LINE CR1 -87 1490 1158 823 185 0 0 chr1 212090946 212091076 -70102588 - FLAM_C SINE Alu -3 130 1 229 217 0 0 chr1 212092629 212092675 -70100989 - MIR3 SINE MIR -25 183 138 1902 152 3 14 chr1 212092701 212092998 -70100666 - AluSx SINE Alu -18 294 1 25 0 0 0 chr1 212094106 212094131 -70099533 + AT_rich Low_complexity Low_complexity 1 25 0 2099 120 0 3 chr1 212094131 212094422 -70099242 - AluSx SINE Alu -22 290 1 1173 166 22 45 chr1 212095608 212095647 -70098017 - L1MB5 LINE L1 0 6174 6136 2347 103 3 0 chr1 212095647 212095949 -70097715 - AluSx SINE Alu -9 303 1 1173 166 22 45 chr1 212095949 212096132 -70097532 - L1MB5 LINE L1 -38 6136 5957 484 217 17 33 chr1 212096224 212096344 -70097320 - L2 LINE L2 0 3272 3155 1264 180 5 1 chr1 212096353 212096589 -70097075 - L1MB5 LINE L1 -245 5925 5700 2095 116 11 0 chr1 212096730 212097014 -70096650 - AluSq SINE Alu -26 287 1 875 170 0 0 chr1 212097173 212097308 -70096356 - AluJo/FRAM SINE Alu -13 299 165 620 149 0 0 chr1 212097308 212097395 -70096269 - AluJ/FLAM SINE Alu -224 88 2 2204 109 0 0 chr1 212098343 212098636 -70095028 + AluSx SINE Alu 4 296 -16 445 214 20 0 chr1 212098640 212098738 -70094926 - L2 LINE L2 -20 3252 3153 217 342 0 0 chr1 212099507 212099583 -70094081 - MIR SINE MIR -103 105 30 1731 104 5 0 chr1 212099720 212099940 -70093724 + AluSq SINE Alu 1 221 -92 1006 205 41 5 chr1 212100145 212100340 -70093324 + MLT1F LTR MaLR 105 306 -236 507 223 15 127 chr1 212100949 212101146 -70092518 + MER20 DNA MER1_type 44 218 -1 2065 109 0 35 chr1 212102888 212103199 -70090465 - AluSg SINE Alu -10 300 1 226 179 90 30 chr1 212103681 212103748 -70089916 + MIR SINE MIR 36 106 -102 661 255 24 72 chr1 212103850 212103967 -70089697 + MIR SINE MIR 35 139 -123 2340 65 0 40 chr1 212103967 212104288 -70089376 + AluY SINE Alu 1 308 -3 661 255 24 72 chr1 212104288 212104378 -70089286 + MIR SINE MIR 139 232 -30 2101 111 0 7 chr1 212105218 212105516 -70088148 + AluSx SINE Alu 1 296 -16 1300 170 0 4 chr1 212105604 212105833 -70087831 + AluJb SINE Alu 83 310 -2 767 159 0 23 chr1 212105873 212106005 -70087659 + FLAM_A SINE Alu 1 129 -4 786 157 0 22 chr1 212106012 212106146 -70087518 - FLAM_C SINE Alu -6 137 7 2333 45 3 0 chr1 212106198 212106490 -70087174 - AluY SINE Alu -18 293 1 1985 132 0 3 chr1 212107581 212107877 -70085787 - AluSx SINE Alu -17 295 1 217 361 154 48 chr1 212108062 212108270 -70085394 - L2 LINE L2 -1 3271 3042 604 287 92 23 chr1 212108332 212108593 -70085071 - L2 LINE L2 -528 2786 2508 429 106 0 0 chr1 212109344 212109410 -70084254 + L1MA3 LINE L1 6239 6304 -1 26 30 0 0 chr1 212109410 212109443 -70084221 + AT_rich Low_complexity Low_complexity 1 33 0 222 339 134 13 chr1 212109702 212109867 -70083797 - L3 LINE CR1 -1 1576 1376 2330 90 0 3 chr1 212109867 212110178 -70083486 + AluSg SINE Alu 1 310 0 222 339 134 13 chr1 212110178 212110236 -70083428 - L3 LINE CR1 -201 1376 1326 410 259 38 8 chr1 212110405 212110536 -70083128 - L1ME4a LINE L1 -26 6095 5961 2178 97 3 0 chr1 212110597 212110895 -70082769 + AluSp SINE Alu 1 299 -14 1958 148 0 7 chr1 212111858 212112168 -70081496 + AluJb SINE Alu 3 310 -2 21 82 0 0 chr1 212112390 212112439 -70081225 + AT_rich Low_complexity Low_complexity 1 49 0 1336 91 0 0 chr1 212112867 212113043 -70080621 + AluSg/x SINE Alu 133 308 -4 38 61 0 0 chr1 212113118 212113184 -70080480 + AT_rich Low_complexity Low_complexity 1 66 0 488 241 23 75 chr1 212113418 212113592 -70080072 + MER5B DNA MER1_type 11 175 -3 990 182 12 28 chr1 212114210 212114429 -70079235 + LTR28 LTR ERV1 1 731 -547 288 217 14 0 chr1 212114467 212114536 -70079128 + LTR1 LTR ERV1 121 190 -595 * 682 148 23 48 chr1 212114503 212114752 -70078912 + LTR27 LTR ERV1 298 634 -2 217 301 82 27 chr1 212114754 212114827 -70078837 + MIR3 SINE MIR 111 187 -21 2310 69 0 20 chr1 212114966 212115272 -70078392 - AluSq SINE Alu -13 300 1 328 329 82 61 chr1 212115739 212116019 -70077645 + L2 LINE L2 2929 3214 -58 401 284 182 17 chr1 212116732 212117028 -70076636 + L2 LINE L2 2550 2894 -420 575 269 57 100 chr1 212117369 212117635 -70076029 + MLT1L LTR MaLR 232 477 -138 1472 172 34 34 chr1 212117635 212117931 -70075733 + AluJo SINE Alu 1 296 -16 575 269 57 100 chr1 212117931 212118065 -70075599 + MLT1L LTR MaLR 477 615 0 367 243 0 40 chr1 212118065 212118139 -70075525 + L2 LINE L2 3197 3267 -5 1597 226 115 42 chr1 212118902 212119451 -70074213 - MLT1E LTR MaLR -4 589 1 322 330 40 0 chr1 212119563 212119663 -70074001 + L2 LINE L2 3114 3217 -55 259 253 35 58 chr1 212119834 212119921 -70073743 + L2 LINE L2 3188 3272 0 1546 114 125 15 chr1 212119999 212120263 -70073401 + AluSg1 SINE Alu 1 293 -16 1586 159 4 0 chr1 212120982 212121233 -70072431 - L1PA16 LINE L1 -22 6144 5893 216 183 225 28 chr1 212121258 212121329 -70072335 + L2 LINE L2 3229 3313 0 3190 155 19 2 chr1 212221635 212222169 -69971495 - L1MA7 LINE L1 -375 5916 5374 447 181 0 11 chr1 212222169 212222263 -69971401 + L1 LINE L1 5138 5230 -916 * 6543 119 45 25 chr1 212222242 212222311 -69971353 + L1MA5A LINE L1 4525 4591 -1706 1744 146 9 73 chr1 212222311 212222605 -69971059 + AluSx SINE Alu 1 273 -39 204 67 0 0 chr1 212222605 212222635 -69971029 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1744 146 9 73 chr1 212222635 212222670 -69970994 + AluSx SINE Alu 273 309 -3 6543 119 45 25 chr1 212222670 212223308 -69970356 + L1MA5A LINE L1 4591 5215 -1082 2177 120 0 7 chr1 212223308 212223608 -69970056 - AluSx SINE Alu -14 298 1 6543 119 45 25 chr1 212223608 212223619 -69970045 + L1MA5A LINE L1 5215 5224 -1073 2590 40 7 0 chr1 212223619 212223920 -69969744 - AluY SINE Alu -8 303 1 6543 119 45 25 chr1 212223920 212224916 -69968748 + L1MA5A LINE L1 5224 6297 0 871 129 27 0 chr1 212224910 212225057 -69968607 + L1 LINE L1 5219 5369 -777 * 656 291 88 13 chr1 212225069 212225375 -69968289 + L1ME3A LINE L1 5612 5940 -230 21 36 0 0 chr1 212225603 212225631 -69968033 + AT_rich Low_complexity Low_complexity 1 28 0 775 255 162 15 chr1 212225783 212226191 -69967473 - L1ME4a LINE L1 -81 6040 5573 314 291 45 52 chr1 212226507 212226641 -69967023 - MIR SINE MIR -51 211 79 2210 115 3 0 chr1 212226667 212226971 -69966693 - AluSx SINE Alu -2 310 6 398 288 50 7 chr1 212227011 212227150 -69966514 + L1ME LINE L1 3 147 -5923 371 217 74 29 chr1 212227148 212227323 -69966341 + L1M4 LINE L1 3037 3219 -2927 * 2283 50 136 0 chr1 212227326 212227663 -69966001 + L1PA3 LINE L1 5790 6167 0 1739 263 40 5 chr1 212227668 212228243 -69965421 + L1M4 LINE L1 3223 3817 -2329 4566 55 14 25 chr1 212228243 212229292 -69964372 - MER11A LTR ERVK 0 1266 1 2190 243 63 14 chr1 212229292 212229987 -69963677 + L1M4 LINE L1 3812 4540 -1606 495 153 0 0 chr1 212229987 212230072 -69963592 - AluJb SINE Alu -8 304 220 557 140 0 0 chr1 212230082 212230175 -69963489 + L1M LINE L1 5277 5369 -922 1363 188 0 5 chr1 212230223 212230441 -69963223 - AluJb SINE Alu -93 219 3 556 204 148 21 chr1 212230512 212230654 -69963010 - FRAM SINE Alu -16 160 1 541 142 5 172 chr1 212230659 212230863 -69962801 + L1M4 LINE L1 4615 4784 -1362 189 0 0 0 chr1 212231534 212231555 -69962109 + (CA)n Simple_repeat Simple_repeat 2 22 0 262 361 47 12 chr1 212231616 212231785 -69961879 - LTR67 LTR ERVL -273 284 110 333 233 14 0 chr1 212231890 212231963 -69961701 - MIR SINE MIR -120 142 69 548 236 121 0 chr1 212233084 212233224 -69960440 - MIR SINE MIR -84 178 22 250 169 77 0 chr1 212233224 212233289 -69960375 - L1MA4A LINE L1 -1 6302 6233 232 314 210 0 chr1 212233445 212233569 -69960095 + MIR SINE MIR 113 262 0 2032 94 4 4 chr1 212233626 212233892 -69959772 - AluSx SINE Alu -44 268 3 307 336 8 8 chr1 212234579 212234698 -69958966 + MIR3 SINE MIR 83 201 -7 254 280 33 87 chr1 212234738 212234888 -69958776 - MARNA DNA Mariner -149 437 296 210 336 59 8 chr1 212234893 212235012 -69958652 - L2 LINE L2 0 3272 3148 281 257 29 14 chr1 212235542 212235612 -69958052 + MIR SINE MIR 36 106 -102 2012 152 0 0 chr1 212235726 212236015 -69957649 + AluSx SINE Alu 6 294 -18 1032 154 12 0 chr1 212236370 212236532 -69957132 + FAM SINE Alu 1 164 -11 288 275 316 12 chr1 212236792 212236963 -69956701 + Charlie8 DNA MER1_type 1 223 -2194 244 242 182 20 chr1 212236976 212237075 -69956589 + MER51C LTR ERV1 395 509 -131 348 309 42 21 chr1 212237095 212237286 -69956378 + L2 LINE L2 2042 2236 -1078 605 185 8 31 chr1 212237357 212237487 -69956177 - FLAM_A SINE Alu -3 130 4 291 200 146 9 chr1 212237543 212237653 -69956011 - L1ME4a LINE L1 -15 6106 5982 318 242 42 42 chr1 212237760 212237855 -69955809 + L2 LINE L2 3219 3313 0 230 176 20 0 chr1 212237864 212237915 -69955749 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr1 212242478 212242500 -69951164 + AT_rich Low_complexity Low_complexity 1 22 0 307 351 11 11 chr1 212242989 212243083 -69950581 - L2 LINE L2 -58 3214 3121 1697 153 29 4 chr1 212243142 212243417 -69950247 + MER2 DNA MER2_type 64 345 0 183 302 0 0 chr1 212243447 212243490 -69950174 - L2 LINE L2 -230 3042 3000 1715 170 99 35 chr1 212243579 212244010 -69949654 + LTR48 LTR ERV1 1 409 -247 556 133 52 51 chr1 212244015 212244218 -69949446 + MER39 LTR ERV1 587 707 0 315 310 88 29 chr1 212244599 212244770 -69948894 + L1ME4a LINE L1 4109 4289 -1857 369 341 129 28 chr1 212244777 212245420 -69948244 + L1ME4a LINE L1 4312 5019 -1127 647 291 69 40 chr1 212245821 212246244 -69947420 + L1ME4a LINE L1 5474 5908 -213 252 77 0 0 chr1 212246479 212246518 -69947146 + (GA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr1 212246886 212246913 -69946751 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 372 295 52 72 chr1 212248220 212248413 -69945251 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr1 212249015 212249043 -69944621 + AT_rich Low_complexity Low_complexity 1 28 0 231 292 49 14 chr1 212250802 212250946 -69942718 + L1ME LINE L1 5584 5732 -389 2104 137 16 0 chr1 212252079 212252386 -69941278 + AluSx SINE Alu 1 312 0 2030 115 0 41 chr1 212252482 212252796 -69940868 + AluSx SINE Alu 1 301 -11 963 213 41 27 chr1 212253047 212253268 -69940396 - MER58A DNA MER1_type 0 224 1 238 260 198 21 chr1 212253868 212253964 -69939700 - MIR SINE MIR -123 139 27 303 279 72 45 chr1 212254792 212254903 -69938761 - MIR SINE MIR -115 147 34 444 209 122 9 chr1 212255084 212255199 -69938465 + L2 LINE L2 3186 3313 0 346 307 17 95 chr1 212255257 212255436 -69938228 + MIR3 SINE MIR 8 172 -36 245 314 171 63 chr1 212256429 212256681 -69936983 - L2 LINE L2 0 3272 2994 324 327 123 78 chr1 212256708 212257351 -69936313 - L2 LINE L2 -768 2546 1875 370 341 72 30 chr1 212257807 212257974 -69935690 + MIR3 SINE MIR 20 193 -15 2157 115 0 3 chr1 212258810 212259106 -69934558 - AluSq SINE Alu -18 295 1 2263 102 0 0 chr1 212259638 212259932 -69933732 - AluY SINE Alu -17 294 1 1476 109 0 5 chr1 212260778 212260988 -69932676 + AluSg/x SINE Alu 87 295 -15 314 190 0 17 chr1 212261306 212261364 -69932300 + L2 LINE L2 3213 3269 -3 463 303 130 3 chr1 212261386 212261606 -69932058 + MIR SINE MIR 3 232 -30 194 338 120 38 chr1 212261820 212261953 -69931711 + L3 LINE CR1 208 351 -1226 28 48 0 0 chr1 212261974 212262016 -69931648 + AT_rich Low_complexity Low_complexity 1 42 0 549 321 109 33 chr1 212262286 212262654 -69931010 + L3 LINE CR1 589 984 -593 366 301 66 55 chr1 212262840 212263023 -69930641 + L3 LINE CR1 1040 1224 -353 392 351 54 7 chr1 212263099 212263247 -69930417 + L2 LINE L2 3114 3268 -4 1019 241 82 0 chr1 212263250 212263482 -69930182 + MIR SINE MIR 2 252 -10 342 314 152 25 chr1 212263684 212263967 -69929697 + L2 LINE L2 2949 3267 -5 297 167 56 0 chr1 212264355 212264409 -69929255 - L2 LINE L2 0 3272 3216 421 179 0 0 chr1 212264772 212264839 -69928825 - L2 LINE L2 0 3313 3247 1078 123 22 0 chr1 212265702 212265881 -69927783 - L1MA8 LINE L1 -3 6288 6106 279 114 0 0 chr1 212266796 212266840 -69926824 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr1 212267399 212267427 -69926237 + AT_rich Low_complexity Low_complexity 1 28 0 650 255 66 10 chr1 212268004 212268200 -69925464 - MIR SINE MIR -5 257 51 989 18 0 0 chr1 212268216 212268328 -69925336 - AluY SINE Alu -12 299 188 22 0 0 73 chr1 212269119 212269160 -69924504 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr1 212269235 212269261 -69924403 + AT_rich Low_complexity Low_complexity 1 26 0 43 35 0 0 chr1 212270391 212270448 -69923216 + AT_rich Low_complexity Low_complexity 1 57 0 413 248 157 31 chr1 212270573 212270867 -69922797 - L1ME4a LINE L1 -188 5933 5603 814 214 148 9 chr1 212270888 212271098 -69922566 - MIR SINE MIR -16 246 8 186 43 0 0 chr1 212271572 212271595 -69922069 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 212271886 212271907 -69921757 + AT_rich Low_complexity Low_complexity 1 21 0 199 347 93 40 chr1 212272442 212272592 -69921072 - MIR3 SINE MIR -9 199 42 878 255 42 0 chr1 212272606 212272818 -69920846 - MER58A DNA MER1_type 0 224 4 331 282 84 53 chr1 212272927 212273058 -69920606 + MIR3 SINE MIR 5 139 -69 1832 136 7 0 chr1 212274716 212274988 -69918676 + AluSx SINE Alu 1 274 -38 193 331 134 14 chr1 212275779 212275921 -69917743 - L2 LINE L2 -3 3310 3152 2173 118 0 7 chr1 212276310 212276614 -69917050 - AluSc SINE Alu -7 302 1 21 36 0 0 chr1 212277430 212277458 -69916206 + AT_rich Low_complexity Low_complexity 1 28 0 534 283 98 35 chr1 212277722 212278006 -69915658 + L1ME LINE L1 5391 5698 -423 1809 161 7 16 chr1 212278006 212278316 -69915348 + AluJo SINE Alu 1 307 -5 534 283 98 35 chr1 212278316 212278346 -69915318 + L1ME LINE L1 5698 5725 -396 261 207 0 17 chr1 212278368 212278426 -69915238 + MER112 DNA MER1_type 152 208 -52 3258 104 9 37 chr1 212279492 212279603 -69914061 + L1MA3 LINE L1 5782 5895 -410 2204 94 0 17 chr1 212279603 212279902 -69913762 + AluY SINE Alu 3 296 -15 3258 104 9 37 chr1 212279902 212280329 -69913335 + L1MA3 LINE L1 5895 6305 0 21 0 0 0 chr1 212280874 212280895 -69912769 + AT_rich Low_complexity Low_complexity 1 21 0 2286 88 0 0 chr1 212281254 212281549 -69912115 + AluSc SINE Alu 1 295 -14 2086 116 7 0 chr1 212281895 212282179 -69911485 + AluSx SINE Alu 3 288 -24 35 0 0 0 chr1 212282179 212282214 -69911450 + AT_rich Low_complexity Low_complexity 1 35 0 610 245 109 22 chr1 212282863 212283047 -69910617 + MIR SINE MIR 45 244 -18 262 288 158 20 chr1 212283800 212283946 -69909718 + MER5B DNA MER1_type 7 172 -6 341 271 58 86 chr1 212285561 212285852 -69907812 - L1ME4a LINE L1 -5 6116 5834 751 260 123 0 chr1 212285887 212286106 -69907558 - MIR SINE MIR 0 262 17 461 269 45 31 chr1 212286122 212286348 -69907316 - L1ME4a LINE L1 -410 5758 5536 348 184 234 0 chr1 212286371 212286512 -69907152 - L1ME4a LINE L1 -2339 5469 5296 260 339 71 11 chr1 212286665 212286948 -69906716 - L1ME4a LINE L1 -1114 5032 4733 312 172 52 30 chr1 212286949 212287083 -69906581 + (TTAAA)n Simple_repeat Simple_repeat 1 137 0 35 63 0 0 chr1 212287083 212287146 -69906518 + AT_rich Low_complexity Low_complexity 1 63 0 288 248 134 13 chr1 212287211 212287360 -69906304 - L1ME4a LINE L1 -1575 4571 4405 277 230 90 10 chr1 212287455 212287555 -69906109 + L1MEd LINE L1 46 153 -5966 520 242 172 8 chr1 212287774 212288018 -69905646 - HAL1b LINE L1 -268 1080 797 4441 171 53 30 chr1 212288020 212288822 -69904842 + Tigger6a DNA MER2_type 2 831 -766 2373 96 0 3 chr1 212288822 212289135 -69904529 + AluSq SINE Alu 1 312 -1 4441 171 53 30 chr1 212289135 212289281 -69904383 + Tigger6a DNA MER2_type 831 972 -111 860 256 67 47 chr1 212289281 212289726 -69903938 - HAL1b LINE L1 -568 780 327 26 0 0 0 chr1 212290063 212290089 -69903575 + AT_rich Low_complexity Low_complexity 1 26 0 2040 115 11 0 chr1 212290109 212290395 -69903269 - AluSx SINE Alu -23 289 1 252 0 0 0 chr1 212291181 212291209 -69902455 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2380 236 24 8 chr1 212291336 212291954 -69901710 + L1ME1 LINE L1 4683 5310 -836 396 0 0 0 chr1 212291956 212292000 -69901664 + (TA)n Simple_repeat Simple_repeat 2 45 0 2801 206 39 85 chr1 212292000 212292843 -69900821 + L1ME1 LINE L1 5363 6166 0 834 90 103 7 chr1 212293143 212293288 -69900376 + L1MB3 LINE L1 6022 6180 -3 743 233 65 43 chr1 212294196 212294428 -69899236 - MIR SINE MIR -24 238 2 217 200 0 0 chr1 212294550 212294585 -69899079 - L2 LINE L2 -16 3256 3222 190 170 85 21 chr1 212294771 212294818 -69898846 - L2 LINE L2 0 3272 3223 441 302 48 8 chr1 212294910 212295036 -69898628 - MIR SINE MIR -112 150 20 21 0 0 0 chr1 212295848 212295869 -69897795 + AT_rich Low_complexity Low_complexity 1 21 0 2198 119 0 6 chr1 212295874 212296185 -69897479 + AluSx SINE Alu 4 312 0 362 115 16 16 chr1 212296683 212296744 -69896920 - L1MB2 LINE L1 -85 6086 6026 2279 97 0 7 chr1 212298219 212298519 -69895145 - AluSx SINE Alu -14 298 1 195 100 0 0 chr1 212298861 212298891 -69894773 + (TA)n Simple_repeat Simple_repeat 1 30 0 2227 84 7 3 chr1 212299462 212299759 -69893905 - AluSp SINE Alu -15 298 1 533 257 128 5 chr1 212300451 212300638 -69893026 + MIR SINE MIR 4 213 -49 386 39 0 0 chr1 212301114 212301165 -69892499 - AluSp/q SINE Alu -3 300 250 388 289 84 21 chr1 212301192 212301563 -69892101 - L1ME LINE L1 -512 5658 5259 320 296 112 92 chr1 212301913 212302607 -69891057 + L1M2 LINE L1 543 1407 -5442 380 307 114 15 chr1 212303179 212303381 -69890283 - MIR SINE MIR -38 224 3 215 311 257 42 chr1 212303651 212304212 -69889452 + L2 LINE L2 1946 2695 -619 224 216 20 20 chr1 212304212 212304263 -69889401 + MIR SINE MIR 101 151 -111 215 311 257 42 chr1 212304263 212304274 -69889390 + L2 LINE L2 2695 2702 -612 1553 123 135 0 chr1 212304276 212304568 -69889096 - MER1B DNA MER1_type 0 339 1 276 354 72 47 chr1 212304900 212305115 -69888549 + L2 LINE L2 2973 3198 -74 977 221 53 90 chr1 212305115 212305526 -69888138 - MSTD LTR MaLR 0 396 1 276 354 72 47 chr1 212305526 212305587 -69888077 + L2 LINE L2 3198 3256 -16 246 192 51 90 chr1 212305609 212305687 -69887977 + MIR SINE MIR 118 192 -70 2239 106 0 0 chr1 212306374 212306657 -69887007 + AluSq SINE Alu 2 284 -29 227 48 0 48 chr1 212306657 212306699 -69886965 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 608 246 15 0 chr1 212307924 212308058 -69885606 + MIR SINE MIR 62 197 -65 219 264 132 0 chr1 212308063 212308154 -69885510 + MIR SINE MIR 156 258 -4 27 29 0 0 chr1 212308272 212308306 -69885358 + AT_rich Low_complexity Low_complexity 1 34 0 862 145 0 0 chr1 212308317 212308434 -69885230 - FLAM_C SINE Alu -16 117 1 234 229 31 0 chr1 212309022 212309118 -69884546 + (TA)n Simple_repeat Simple_repeat 2 100 0 180 77 0 0 chr1 212309870 212309896 -69883768 + (CA)n Simple_repeat Simple_repeat 1 26 0 955 180 12 6 chr1 212310973 212311134 -69882530 + FRAM SINE Alu 1 162 -14 437 246 39 23 chr1 212311231 212311290 -69882374 - MER94 DNA DNA 0 134 77 2460 118 33 36 chr1 212311290 212311655 -69882009 - THE1B LTR MaLR 0 364 1 437 246 39 23 chr1 212311655 212311725 -69881939 - MER94 DNA DNA -57 77 3 2129 106 7 13 chr1 212312792 212313095 -69880569 + AluSx SINE Alu 3 303 -9 23 0 0 0 chr1 212313135 212313158 -69880506 + AT_rich Low_complexity Low_complexity 1 23 0 2186 103 26 0 chr1 212313290 212313592 -69880072 - AluSq SINE Alu -3 310 1 417 293 92 29 chr1 212313694 212313868 -69879796 - MIR SINE MIR -46 216 32 216 265 0 0 chr1 212314081 212314149 -69879515 + T-rich Low_complexity Low_complexity 1 68 0 2010 147 3 3 chr1 212314194 212314500 -69879164 + AluSx SINE Alu 1 306 -6 2160 94 13 7 chr1 212314951 212315250 -69878414 - AluSx SINE Alu -11 301 1 1782 153 6 32 chr1 212315429 212315743 -69877921 + MER1B DNA MER1_type 1 306 -33 591 287 16 37 chr1 212315782 212316026 -69877638 - L2 LINE L2 -877 2437 2199 219 335 180 0 chr1 212316191 212316397 -69877267 - L2 LINE L2 -1138 2176 1934 25 31 0 0 chr1 212316957 212316989 -69876675 + AT_rich Low_complexity Low_complexity 1 32 0 431 48 16 0 chr1 212317081 212317143 -69876521 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 938 284 80 29 chr1 212317230 212317681 -69875983 - MLT1J LTR MaLR -35 476 3 2199 138 0 0 chr1 212318440 212318780 -69874884 - AluSx SINE Alu 0 312 1 2866 117 8 66 chr1 212318807 212319304 -69874360 + LTR9 LTR ERV1 1 468 -144 1049 134 81 5 chr1 212319359 212319568 -69874096 + Charlie5 DNA MER1_type 2361 2585 -27 202 0 0 83 chr1 212319650 212319686 -69873978 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1656 158 0 54 chr1 212319694 212319992 -69873672 - AluJo SINE Alu -15 297 16 400 348 71 24 chr1 212320039 212320292 -69873372 - L3 LINE CR1 -64 1513 1249 654 289 28 30 chr1 212320812 212320829 -69872835 + MLT1H LTR MaLR 48 64 -485 2115 130 0 0 chr1 212320829 212321129 -69872535 + AluSx SINE Alu 1 300 -12 654 289 28 30 chr1 212321129 212321333 -69872331 + MLT1H LTR MaLR 64 299 -250 358 234 62 67 chr1 212321341 212321522 -69872142 + MLT1H LTR MaLR 278 543 -6 582 257 55 0 chr1 212321618 212321801 -69871863 + L2 LINE L2 2819 3011 -302 3063 102 25 35 chr1 212321890 212322483 -69871181 + MER4E LTR ERV1 1 766 0 2358 57 0 47 chr1 212322763 212323080 -69870584 + AluY SINE Alu 1 302 -9 925 257 102 30 chr1 212323117 212323479 -69870185 + MLT1D LTR MaLR 1 388 -117 295 321 83 0 chr1 212323572 212323681 -69869983 + MIR3 SINE MIR 58 175 -33 238 114 0 0 chr1 212323783 212323818 -69869846 + MER103 DNA DNA 1 35 -131 260 258 15 0 chr1 212324177 212324243 -69869421 + MLT1K LTR MaLR 522 588 0 2022 123 0 58 chr1 212324519 212324844 -69868820 - AluSx SINE Alu -6 306 1 246 95 0 0 chr1 212324916 212324958 -69868706 + (TG)n Simple_repeat Simple_repeat 1 42 0 1730 155 32 4 chr1 212324958 212325226 -69868438 - AluJb SINE Alu -31 281 3 189 0 0 0 chr1 212325888 212325909 -69867755 + (A)n Simple_repeat Simple_repeat 1 21 0 2362 93 3 3 chr1 212326221 212326523 -69867141 - AluSg SINE Alu -8 302 1 275 323 68 12 chr1 212326533 212326694 -69866970 - L1ME4a LINE L1 -3 6118 5949 32 26 0 0 chr1 212327184 212327223 -69866441 + AT_rich Low_complexity Low_complexity 1 39 0 400 293 20 34 chr1 212327444 212327591 -69866073 - LTR67 LTR ERVL -410 147 3 3054 206 39 34 chr1 212327700 212327768 -69865896 - L1ME1 LINE L1 -12 6154 6088 509 62 0 175 chr1 212327768 212327865 -69865799 + MADE1 DNA Mariner 1 80 0 3054 206 39 34 chr1 212327865 212328508 -69865156 - L1ME1 LINE L1 -78 6088 5439 1979 132 11 0 chr1 212328515 212328837 -69864827 + AluSx SINE Alu 1 325 0 1532 201 96 29 chr1 212328931 212329339 -69864325 + MSTB2 LTR MaLR 15 449 -8 821 282 83 81 chr1 212329885 212330368 -69863296 + L3 LINE CR1 649 1132 -445 222 301 156 47 chr1 212330396 212330649 -69863015 + L2 LINE L2 1883 2190 -1124 1523 167 65 4 chr1 212330649 212330924 -69862740 - AluJb SINE Alu -20 292 1 222 301 156 47 chr1 212330924 212331035 -69862629 + L2 LINE L2 2190 2287 -1027 4821 61 41 5 chr1 212331035 212332116 -69861548 + MER11A LTR ERVK 1 1266 0 488 297 134 49 chr1 212332797 212333184 -69860480 + L3 LINE CR1 1157 1576 -1 252 86 0 0 chr1 212333779 212333814 -69859850 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1010 193 97 119 chr1 212334398 212334760 -69858904 + MLT1H LTR MaLR 1 354 -195 274 299 0 0 chr1 212334884 212334961 -69858703 + MIR SINE MIR 60 136 -126 221 333 56 0 chr1 212335030 212335102 -69858562 - MIR SINE MIR -63 145 70 313 261 54 11 chr1 212335283 212335375 -69858289 + L2 LINE L2 3208 3303 -10 1359 25 44 0 chr1 212336433 212336591 -69857073 + L1PA6 LINE L1 5989 6153 -1 192 256 39 77 chr1 212336695 212336773 -69856891 + L2 LINE L2 3137 3211 -61 2106 121 7 0 chr1 212337188 212337477 -69856187 - AluSx SINE Alu -21 291 1 313 282 29 0 chr1 212338239 212338342 -69855322 + L2 LINE L2 3208 3313 0 1706 181 57 0 chr1 212339666 212339947 -69853717 - AluJo SINE Alu -15 297 1 1990 125 4 0 chr1 212340985 212341289 -69852375 + AluSx SINE Alu 5 309 0 322 263 153 8 chr1 212341451 212341569 -69852095 + L2 LINE L2 3173 3307 -6 216 97 0 0 chr1 212341636 212341667 -69851997 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 215 345 62 18 chr1 212341768 212341881 -69851783 + L2 LINE L2 3147 3264 -8 239 293 138 52 chr1 212343987 212344103 -69849561 - L2 LINE L2 0 3272 3147 315 289 22 67 chr1 212344388 212344523 -69849141 + MER91B DNA MER1_type 1 129 -61 538 209 9 19 chr1 212344538 212344643 -69849021 + MER91B DNA MER1_type 87 190 0 2248 122 0 7 chr1 212344844 212345148 -69848516 - AluSx SINE Alu -10 302 1 196 208 21 42 chr1 212345406 212345454 -69848210 - L3b LINE CR1 -246 1337 1291 271 294 39 33 chr1 212345472 212345625 -69848039 + MIR SINE MIR 102 255 -7 207 247 0 49 chr1 212345626 212345707 -69847957 + CT-rich Low_complexity Low_complexity 4 80 0 1320 205 104 101 chr1 212346333 212346749 -69846915 - L1ME1 LINE L1 -5 6161 5741 8339 12 0 0 chr1 212346749 212347442 -69846222 - L1PA3 LINE L1 -1 6154 5473 2860 13 0 0 chr1 212347442 212347751 -69845913 - AluY SINE Alu -2 309 1 8339 12 0 0 chr1 212347751 212348393 -69845271 - L1PA3 LINE L1 -681 5474 4833 1320 205 104 101 chr1 212348393 212348551 -69845113 - L1ME1 LINE L1 -425 5741 5585 266 300 12 0 chr1 212349106 212349186 -69844478 + MIR SINE MIR 68 148 -60 217 358 85 40 chr1 212349229 212349430 -69844234 + L2 LINE L2 2969 3178 -94 324 262 19 78 chr1 212349642 212349745 -69843919 + MER5B DNA MER1_type 74 170 -8 180 152 0 0 chr1 212350494 212350527 -69843137 + (TAG)n Simple_repeat Simple_repeat 3 35 0 329 261 122 0 chr1 212350574 212350689 -69842975 + MIR SINE MIR 48 176 -86 707 223 8 0 chr1 212351060 212351190 -69842474 + MER58B DNA MER1_type 210 340 -1 803 329 160 8 chr1 212351851 212352344 -69841320 + L3 LINE CR1 999 1566 -11 2515 77 0 3 chr1 212352482 212352794 -69840870 - AluY SINE Alu 0 311 1 250 290 56 16 chr1 212352990 212353115 -69840549 + MIR SINE MIR 64 192 -58 2163 117 3 16 chr1 212354469 212354776 -69838888 - AluSx SINE Alu -9 303 1 235 143 0 0 chr1 212355133 212355168 -69838496 + MER5B DNA MER1_type 1 35 -143 1855 137 0 19 chr1 212355212 212355483 -69838181 + AluSx SINE Alu 1 266 -46 264 32 0 0 chr1 212355489 212355520 -69838144 + MER5B DNA MER1_type 137 167 -11 331 340 57 33 chr1 212357078 212357290 -69836374 + L1ME4a LINE L1 5442 5658 -2150 227 237 0 18 chr1 212357319 212357413 -69836251 + L1MC4 LINE L1 2006 6983 -1339 297 253 50 29 chr1 212357441 212357623 -69836041 + L1ME4a LINE L1 5744 5928 -193 2158 94 7 13 chr1 212458053 212458352 -69735312 - AluSq SINE Alu -16 297 1 272 254 206 63 chr1 212459957 212460146 -69733518 - MIR SINE MIR -26 236 21 1776 155 13 28 chr1 212460297 212460614 -69733050 + AluJb SINE Alu 1 312 0 1829 147 0 17 chr1 212461349 212461642 -69732022 + AluJb SINE Alu 23 310 -2 22 0 0 0 chr1 212462253 212462275 -69731389 + AT_rich Low_complexity Low_complexity 1 22 0 2252 118 3 0 chr1 212462557 212462862 -69730802 + AluSx SINE Alu 1 306 -6 738 132 0 0 chr1 212462864 212462970 -69730694 - Tigger7 DNA MER2_type 0 2487 2382 1191 186 8 65 chr1 212462971 212463218 -69730446 - Tigger7 DNA MER2_type -2253 234 2 776 211 16 41 chr1 212465276 212465470 -69728194 + MLT1E LTR MaLR 403 591 -2 314 211 14 0 chr1 212465695 212465766 -69727898 + MLT1F1 LTR MaLR 496 567 0 21 0 0 0 chr1 212466079 212466100 -69727564 + AT_rich Low_complexity Low_complexity 1 21 0 1891 152 11 0 chr1 212466104 212466387 -69727277 - AluJb SINE Alu -24 288 3 542 294 142 28 chr1 212466389 212466806 -69726858 - L2 LINE L2 -190 3082 2611 21 36 0 0 chr1 212466930 212466958 -69726706 + AT_rich Low_complexity Low_complexity 1 28 0 421 248 44 0 chr1 212467114 212467227 -69726437 - MIR SINE MIR -69 193 76 2892 93 58 21 chr1 212467749 212468181 -69725483 + LTR7 LTR ERV1 1 448 -2 17441 96 23 21 chr1 212468183 212471416 -69722248 + HERVH LTR ERV1 1 2995 -4718 879 124 28 0 chr1 212471395 212471540 -69722124 + HERVH LTR ERV1 3140 3288 -4425 * 3412 112 6 2 chr1 212471532 212472032 -69721632 + HERVH LTR ERV1 3492 3993 -3720 4370 142 5 1 chr1 212472034 212472694 -69720970 + HERVH LTR ERV1 4488 5149 -2564 1434 125 19 0 chr1 212472695 212472911 -69720753 + HERVH LTR ERV1 5600 5819 -1894 * 2694 63 45 13 chr1 212472909 212473289 -69720375 + HERVH LTR ERV1 7322 7713 0 2841 91 63 21 chr1 212473290 212473719 -69719945 + LTR7 LTR ERV1 2 448 -2 203 328 0 0 chr1 212474010 212474068 -69719596 + MER91C DNA MER1_type 51 108 -32 302 253 105 0 chr1 212474189 212474284 -69719380 - MER117 DNA MER1_type -49 148 44 30 59 0 0 chr1 212475032 212475083 -69718581 + AT_rich Low_complexity Low_complexity 1 51 0 1857 243 68 39 chr1 212475284 212475812 -69717852 + L1MC4a LINE L1 5272 5826 -1982 4415 80 11 11 chr1 212475812 212476364 -69717300 - MER41A LTR ERV1 0 554 3 1857 243 68 39 chr1 212476364 212476507 -69717157 + L1MC4a LINE L1 5826 5963 -1845 2241 99 3 0 chr1 212478093 212478385 -69715279 + AluSx SINE Alu 1 293 -19 2427 32 0 14 chr1 212478576 212478899 -69714765 + AluY SINE Alu 1 319 0 960 172 20 0 chr1 212479909 212480060 -69713604 + FAM SINE Alu 5 158 -17 192 77 0 0 chr1 212480585 212480611 -69713053 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 186 103 0 0 chr1 212481531 212481560 -69712104 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 597 181 16 31 chr1 212482047 212482174 -69711490 - L2 LINE L2 0 3313 3189 2803 29 0 0 chr1 212482236 212482547 -69711117 + AluY SINE Alu 1 311 0 462 284 133 87 chr1 212482799 212483359 -69710305 - L2 LINE L2 -1 3271 2594 450 276 31 8 chr1 212483463 212483590 -69710074 + MIR SINE MIR 116 245 -17 348 235 113 35 chr1 212483647 212483762 -69709902 + MIR SINE MIR 126 249 -13 2281 196 25 2 chr1 212484064 212484513 -69709151 - L1MB4 LINE L1 -9 6171 5713 1480 247 91 16 chr1 212485045 212485569 -69708095 - L2 LINE L2 -264 3049 2490 2372 108 0 0 chr1 212485642 212485948 -69707716 + AluSx SINE Alu 1 306 -6 29 47 0 0 chr1 212486005 212486048 -69707616 + AT_rich Low_complexity Low_complexity 1 43 0 511 236 113 32 chr1 212486609 212486845 -69706819 + L1ME LINE L1 5540 5729 -392 21 0 0 0 chr1 212489254 212489275 -69704389 + AT_rich Low_complexity Low_complexity 1 21 0 920 281 8 11 chr1 212492627 212492887 -69700777 + MIR SINE MIR 2 260 -2 1736 181 14 3 chr1 212493402 212493695 -69699969 - AluJb SINE Alu -16 296 1 395 216 250 52 chr1 212493701 212493844 -69699820 - L1ME4a LINE L1 -116 6005 5892 2327 97 0 0 chr1 212493844 212494143 -69699521 + AluY SINE Alu 1 299 -12 395 216 250 52 chr1 212494143 212494383 -69699281 - L1ME4a LINE L1 -229 5892 5546 247 305 23 0 chr1 212494429 212494557 -69699107 - L1ME4a LINE L1 -717 5447 5317 335 319 106 11 chr1 212494565 212494838 -69698826 - L1ME4a LINE L1 -846 5300 5002 709 126 71 31 chr1 212499529 212499656 -69694008 + LTR54B LTR ERV1 1 132 -366 267 103 0 0 chr1 212499678 212499717 -69693947 + (TTTTC)n Simple_repeat Simple_repeat 1 39 0 237 137 39 39 chr1 212499738 212499789 -69693875 + LTR54B LTR ERV1 234 284 -214 864 127 20 20 chr1 212499789 212499939 -69693725 + MER57A-int LTR ERV1 7388 7537 0 2546 145 16 0 chr1 212499939 212500326 -69693338 + MER57A LTR ERV1 1 393 -10 264 200 100 0 chr1 212500331 212500421 -69693243 - MER5C DNA MER1_type -62 262 164 1390 133 45 82 chr1 212500617 212500886 -69692778 - L1MCa LINE L1 -1455 4971 4715 6511 27 0 0 chr1 212500886 212501596 -69692068 - L1PA4 LINE L1 -6 6149 5440 1390 133 45 82 chr1 212501596 212501656 -69692008 - L1MCa LINE L1 -1711 4715 4654 45608 35 1 2 chr1 212501657 212507828 -69685836 + L1PA3 LINE L1 1 6167 0 570 166 185 7 chr1 212507829 212507980 -69685684 - L1 LINE L1 -1759 4667 4490 507 243 59 52 chr1 212508036 212508172 -69685492 - MIR SINE MIR -106 156 20 5987 204 32 31 chr1 212508318 212509589 -69684075 - L1MCa LINE L1 -1833 4593 3319 2549 65 3 0 chr1 212509589 212509897 -69683767 - AluSp SINE Alu -2 311 3 5987 204 32 31 chr1 212509897 212510106 -69683558 - L1MCa LINE L1 -3107 3319 3112 769 170 0 57 chr1 212510106 212510247 -69683417 - FLAM_C SINE Alu -9 134 2 10816 191 71 50 chr1 212510251 212510910 -69682754 - L1MCa LINE L1 -3301 3125 2482 2345 97 0 3 chr1 212510910 212511220 -69682444 - AluSp SINE Alu -4 309 1 10816 191 71 50 chr1 212511220 212511596 -69682068 - L1MCa LINE L1 -3944 2482 2116 225 0 0 0 chr1 212511596 212511621 -69682043 + (TG)n Simple_repeat Simple_repeat 2 26 0 10816 191 71 50 chr1 212511621 212512045 -69681619 - L1MCa LINE L1 -4310 2116 1703 207 0 0 0 chr1 212512045 212512068 -69681596 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 716 165 0 55 chr1 212512068 212512195 -69681469 - FLAM_C SINE Alu -12 121 2 10816 191 71 50 chr1 212512195 212512518 -69681146 - L1MCa LINE L1 -4723 1703 1388 2281 66 0 24 chr1 212512518 212512805 -69680859 - AluSc SINE Alu -6 303 24 10816 191 71 50 chr1 212512805 212513259 -69680405 - L1MCa LINE L1 -5038 1388 945 2383 105 46 40 chr1 212513259 212513632 -69680032 - THE1C LTR MaLR 0 375 1 10816 191 71 50 chr1 212513632 212514381 -69679283 - L1MCa LINE L1 -5481 945 32 1958 168 24 0 chr1 212514379 212514486 -69679178 - L1ME1 LINE L1 -341 5825 5722 * 2425 133 19 24 chr1 212514486 212514862 -69678802 - THE1C LTR MaLR -1 374 1 1958 168 24 0 chr1 212514862 212515093 -69678571 - L1ME1 LINE L1 -444 5722 5479 267 242 94 60 chr1 212515415 212515514 -69678150 - L1MDa LINE L1 -4718 1411 1304 2483 88 0 0 chr1 212515514 212515819 -69677845 - AluSx SINE Alu -7 305 1 267 242 94 60 chr1 212515819 212515868 -69677796 - L1MDa LINE L1 -4825 1304 1258 398 290 129 57 chr1 212516001 212516472 -69677192 - L1MDa LINE L1 -4971 1148 713 1301 65 0 0 chr1 212516472 212516626 -69677038 - L1PA11 LINE L1 -2 6172 6019 532 259 127 0 chr1 212516631 212516789 -69676875 + MER5B DNA MER1_type 1 178 0 398 290 129 57 chr1 212516789 212517279 -69676385 - L1MDa LINE L1 -5409 710 59 328 195 0 12 chr1 212518900 212518982 -69674682 + CT-rich Low_complexity Low_complexity 4 84 0 917 322 75 48 chr1 212519093 212519367 -69674297 - L3 LINE CR1 -2 1575 1310 419 183 118 141 chr1 212519367 212519451 -69674213 - MER112 DNA MER1_type 0 256 172 1670 201 13 3 chr1 212519451 212519759 -69673905 + AluJb SINE Alu 1 311 -1 419 183 118 141 chr1 212519759 212519936 -69673728 - MER112 DNA MER1_type -84 172 1 917 322 75 48 chr1 212519936 212520248 -69673416 - L3 LINE CR1 -267 1310 973 519 176 73 85 chr1 212520460 212520625 -69673039 + MIR SINE MIR 85 247 -15 475 223 32 0 chr1 212520717 212520811 -69672853 - MER94 DNA DNA 0 134 38 300 299 52 0 chr1 212521105 212521202 -69672462 - L3 LINE CR1 -784 793 692 254 245 245 20 chr1 212521387 212521534 -69672130 - MIR SINE MIR -44 218 39 496 133 13 0 chr1 212522266 212522341 -69671323 - AluJ/FRAM SINE Alu -13 299 224 30937 106 65 9 chr1 212522901 212528706 -69664958 - L1PA7 LINE L1 -1 6153 13 239 272 192 0 chr1 212529858 212529983 -69663681 - L1ME4a LINE L1 0 6121 5973 21 0 0 0 chr1 212529989 212530010 -69663654 + AT_rich Low_complexity Low_complexity 1 21 0 940 288 156 12 chr1 212530363 212530780 -69662884 + L2 LINE L2 2177 2653 -661 415 265 83 17 chr1 212530791 212530972 -69662692 + L2 LINE L2 3086 3278 -35 273 276 0 17 chr1 212531633 212531691 -69661973 + MIR SINE MIR 39 95 -113 189 0 0 0 chr1 212532119 212532140 -69661524 + (GA)n Simple_repeat Simple_repeat 2 22 0 26 64 0 0 chr1 212532706 212532753 -69660911 + AT_rich Low_complexity Low_complexity 1 47 0 357 278 0 0 chr1 212533267 212533339 -69660325 + L2 LINE L2 3201 3272 0 279 255 29 0 chr1 212534602 212534704 -69658960 - L1MEc LINE L1 -4975 1421 1317 230 0 0 32 chr1 212534709 212534740 -69658924 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr1 212535702 212535732 -69657932 + AT_rich Low_complexity Low_complexity 1 30 0 560 238 82 43 chr1 212536358 212536597 -69657067 + L1ME1 LINE L1 5924 6166 0 2297 101 0 0 chr1 212536620 212536916 -69656748 - AluY SINE Alu -15 296 1 233 221 26 0 chr1 212537123 212537200 -69656464 + CT-rich Low_complexity Low_complexity 3 81 0 209 328 0 0 chr1 212539255 212539319 -69654345 - MIR SINE MIR -108 154 91 2192 248 181 14 chr1 212539877 212540147 -69653517 + L2 LINE L2 1811 2035 -1279 1037 155 62 16 chr1 212540147 212540341 -69653323 - MER105 DNA DNA -1 203 1 2192 248 181 14 chr1 212540341 212540917 -69652747 + L2 LINE L2 2035 2798 -516 809 304 113 26 chr1 212540950 212541341 -69652323 + L2 LINE L2 2886 3310 -3 229 83 0 28 chr1 212542021 212542057 -69651607 - MER63 DNA MER1_type -171 39 5 * 572 278 68 0 chr1 212542056 212542261 -69651403 + LTR33A LTR ERVL 284 502 -21 2925 68 0 32 chr1 212544261 212544378 -69649286 - L1PA8 LINE L1 0 6172 6053 2282 95 7 0 chr1 212544378 212544672 -69648992 - AluSg SINE Alu -14 296 1 2925 68 0 32 chr1 212544672 212544934 -69648730 - L1PA8 LINE L1 -119 6053 5805 212 279 105 23 chr1 212544954 212545040 -69648624 - MIR SINE MIR -71 137 45 24 0 0 29 chr1 212545463 212545485 -69648179 + AT_rich Low_complexity Low_complexity 1 23 -11 2179 124 0 0 chr1 212545485 212545783 -69647881 + AluSg SINE Alu 1 298 -12 24 0 0 29 chr1 212545783 212545795 -69647869 + AT_rich Low_complexity Low_complexity 23 34 0 2401 150 30 37 chr1 212546601 212547002 -69646662 - MER48 LTR ERV1 0 398 1 3717 88 4 2 chr1 212547002 212547481 -69646183 - HERVH48 LTR ERV1 0 6654 6175 * 32043 102 34 6 chr1 212547473 212552160 -69641504 - HERVH48 LTR ERV1 -1510 5144 328 2028 49 8 23 chr1 212552168 212552434 -69641230 + HERVH48 LTR ERV1 1323 1584 -5070 1919 154 23 0 chr1 212552432 212552731 -69640933 - HERVH48 LTR ERV1 -6348 306 1 * 2463 129 32 47 chr1 212552731 212553135 -69640529 - MER48 LTR ERV1 0 398 1 1764 154 119 29 chr1 212554329 212554673 -69638991 - THE1C LTR MaLR 0 375 1 254 277 152 27 chr1 212555745 212555857 -69637807 + MIR SINE MIR 80 205 -57 186 71 0 0 chr1 212556294 212556322 -69637342 + (GA)n Simple_repeat Simple_repeat 2 29 0 2097 116 24 0 chr1 212556850 212557143 -69636521 - AluSx SINE Alu -12 300 1 1892 206 44 0 chr1 212557305 212557645 -69636019 + MLT1A1 LTR MaLR 11 365 0 444 223 9 36 chr1 212557645 212557757 -69635907 + L2 LINE L2 3205 3313 0 205 377 164 0 chr1 212558377 212558499 -69635165 - MIR3 SINE MIR -45 163 22 550 267 24 36 chr1 212558799 212558964 -69634700 - MIR SINE MIR -54 208 46 211 234 208 0 chr1 212558993 212559070 -69634594 + MIR3 SINE MIR 102 194 -14 1834 172 155 83 chr1 212559498 212559588 -69634076 - MLT2B1 LTR ERVL -2 518 436 189 0 0 0 chr1 212559588 212559609 -69634055 + (GGGA)n Simple_repeat Simple_repeat 4 24 0 1834 172 155 83 chr1 212559609 212560001 -69633663 - MLT2B1 LTR ERVL -84 436 1 1106 216 90 42 chr1 212560113 212560495 -69633169 - MLT1J1 LTR MaLR 0 446 50 723 249 81 49 chr1 212560865 212561150 -69632514 + Charlie2 DNA MER1_type 2 295 -2567 571 195 65 35 chr1 212561201 212561401 -69632263 + Charlie2 DNA MER1_type 2230 2435 -427 301 243 318 23 chr1 212561519 212561692 -69631972 - L2 LINE L2 -86 3227 3004 2037 116 42 0 chr1 212561789 212562074 -69631590 + AluY SINE Alu 1 297 -14 1006 186 22 26 chr1 212562085 212562354 -69631310 + Charlie2 DNA MER1_type 2595 2862 0 357 317 54 63 chr1 212562354 212562481 -69631183 + MIR SINE MIR 9 135 -127 2079 96 11 4 chr1 212562481 212562762 -69630902 + AluSg SINE Alu 23 305 -5 357 317 54 63 chr1 212562762 212562839 -69630825 + MIR SINE MIR 135 211 -51 2270 106 3 3 chr1 212563448 212563749 -69629915 + AluSx SINE Alu 1 301 -11 376 326 149 25 chr1 212564512 212564880 -69628784 - L2 LINE L2 -629 2685 2272 340 305 103 101 chr1 212565367 212565803 -69627861 + L2 LINE L2 2821 3257 -56 317 322 57 25 chr1 212565787 212566032 -69627632 - L2 LINE L2 -1077 2237 1985 * 1903 265 70 24 chr1 212566059 212567055 -69626609 + L1ME1 LINE L1 1103 2144 -4252 12441 141 7 24 chr1 212567057 212569084 -69624580 + L1M1 LINE L1 11 2004 -5561 1039 137 81 0 chr1 212569084 212569281 -69624383 - THE1C LTR MaLR 0 375 163 26 0 0 0 chr1 212569296 212569322 -69624342 + AT_rich Low_complexity Low_complexity 1 26 0 3009 232 79 11 chr1 212569342 212570482 -69623182 + L1ME1 LINE L1 2384 3600 -2615 1171 167 47 0 chr1 212570566 212570781 -69622883 - MER46A DNA MER2_type -10 226 2 2084 229 78 36 chr1 212570804 212571212 -69622452 + L1ME1 LINE L1 3669 4058 -2157 423 155 78 0 chr1 212571212 212571315 -69622349 + L1MB7 LINE L1 6074 6184 0 2084 229 78 36 chr1 212571315 212571687 -69621977 + L1ME1 LINE L1 4058 4482 -1733 1746 262 16 46 chr1 212571692 212572256 -69621408 + MLT2B3 LTR ERVL 1 547 -7 3369 215 67 19 chr1 212572270 212573009 -69620655 + L1ME1 LINE L1 4490 5192 -1043 207 0 0 0 chr1 212573009 212573032 -69620632 + (TG)n Simple_repeat Simple_repeat 2 24 0 3369 215 67 19 chr1 212573032 212573949 -69619715 + L1ME1 LINE L1 5192 6231 -4 415 205 179 8 chr1 212575485 212575602 -69618062 + MIR SINE MIR 37 173 -89 22 0 0 0 chr1 212578893 212578915 -69614749 + AT_rich Low_complexity Low_complexity 1 22 0 507 335 28 11 chr1 212580204 212580380 -69613284 - MIR3 SINE MIR -25 183 5 864 155 31 0 chr1 212581325 212581454 -69612210 + FLAM_C SINE Alu 1 133 0 2377 97 0 3 chr1 212581995 212582305 -69611359 + AluSx SINE Alu 1 309 -3 2151 144 0 0 chr1 212582476 212582782 -69610882 + AluSx SINE Alu 1 306 -6 1091 183 17 0 chr1 212582834 212583009 -69610655 - MER45A DNA AcHobo 0 178 1 526 241 123 12 chr1 212583281 212583451 -69610213 + MIR SINE MIR 65 253 -9 288 316 124 42 chr1 212584959 212585266 -69608398 - L2 LINE L2 -433 2881 2550 266 106 21 0 chr1 212586581 212586628 -69607036 + (GA)n Simple_repeat Simple_repeat 1 48 0 1912 169 0 7 chr1 212586864 212587171 -69606493 - AluJo SINE Alu -7 305 1 321 407 63 14 chr1 212587953 212588174 -69605490 + L1MEd LINE L1 420 651 -5468 805 219 67 0 chr1 212588238 212588402 -69605262 - MER96 DNA MER1_type 0 175 1 549 330 98 12 chr1 212588604 212589083 -69604581 - L1ME LINE L1 -345 5817 5298 236 215 18 129 chr1 212589573 212589736 -69603928 - L1ME LINE L1 -1453 4693 4549 219 204 0 0 chr1 212590197 212590251 -69603413 + (TA)n Simple_repeat Simple_repeat 2 55 0 550 284 9 39 chr1 212590255 212590484 -69603180 - L1ME3A LINE L1 -271 5899 5678 17947 137 32 87 chr1 212590485 212590510 -69603154 - L1P LINE L1 -2259 3887 3862 6605 60 12 0 chr1 212590510 212591489 -69602175 - L1PA7 LINE L1 -6 6148 5159 17947 137 32 87 chr1 212591489 212592252 -69601412 - L1P LINE L1 -2284 3862 3059 2445 66 0 3 chr1 212592252 212592553 -69601111 - AluY SINE Alu -1 310 11 17947 137 32 87 chr1 212592553 212595862 -69597802 - L1P LINE L1 -3087 3059 12 456 305 28 5 chr1 212595878 212596091 -69597573 - L1ME3A LINE L1 -479 5691 5474 2417 76 0 0 chr1 212596091 212596382 -69597282 - AluSc SINE Alu -18 291 1 381 131 0 0 chr1 212596518 212596579 -69597085 + (TC)n Simple_repeat Simple_repeat 2 62 0 434 295 130 39 chr1 212596582 212596867 -69596797 - HAL1 LINE L1 -862 1645 1335 349 275 75 33 chr1 212596876 212597236 -69596428 - L1MEd LINE L1 -4902 1217 843 1218 240 126 11 chr1 212597245 212597670 -69595994 - LTR40c LTR ERVL 0 462 1 584 326 114 25 chr1 212597673 212598148 -69595516 - L1MEd LINE L1 -5285 834 318 727 270 68 25 chr1 212598222 212598459 -69595205 - MLT1J2 LTR MaLR 0 450 204 323 241 69 21 chr1 212598771 212598851 -69594813 - L1MEd LINE L1 -5966 153 78 207 0 0 0 chr1 212598851 212598874 -69594790 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 323 241 69 21 chr1 212598874 212598938 -69594726 - L1MEd LINE L1 -6041 78 2 26 50 0 0 chr1 212599255 212599295 -69594369 + AT_rich Low_complexity Low_complexity 1 40 0 504 177 80 11 chr1 212599410 212599556 -69594108 + L1ME1 LINE L1 6029 6333 -1 2382 86 0 3 chr1 212599738 212600042 -69593622 - AluSq SINE Alu -10 303 1 377 73 0 0 chr1 212600050 212600105 -69593559 - Alu SINE Alu -3 298 244 277 342 75 16 chr1 212600255 212600442 -69593222 - L2 LINE L2 -449 2865 2668 428 295 126 8 chr1 212601519 212601723 -69591941 - MIR SINE MIR -12 250 23 1602 208 13 40 chr1 212601992 212602056 -69591608 - MLT1A1 LTR MaLR 0 365 301 2448 70 0 3 chr1 212602056 212602354 -69591310 - AluY SINE Alu -14 297 1 1602 208 13 40 chr1 212602354 212602664 -69591000 - MLT1A1 LTR MaLR -64 301 1 430 286 62 6 chr1 212603098 212603259 -69590405 + MIR SINE MIR 20 189 -73 224 328 82 37 chr1 212603366 212603500 -69590164 + L2 LINE L2 3173 3312 -1 184 185 0 0 chr1 212604464 212604491 -69589173 + L2 LINE L2 3263 3289 -24 2196 123 0 10 chr1 212605088 212605396 -69588268 + AluSx SINE Alu 1 305 -7 2269 100 13 0 chr1 212605926 212606226 -69587438 - AluSc SINE Alu -5 304 1 593 298 42 57 chr1 212607022 212607226 -69586438 - L1M4 LINE L1 -2217 3929 3724 1718 181 0 20 chr1 212607226 212607524 -69586140 - AluJb SINE Alu -20 292 1 663 159 8 45 chr1 212607533 212607665 -69585999 - FLAM_C SINE Alu -6 127 1 593 298 42 57 chr1 212607665 212608068 -69585596 - L1M4 LINE L1 -2430 3716 3321 513 300 52 20 chr1 212608299 212608549 -69585115 - MIR SINE MIR -2 260 3 2594 140 74 54 chr1 212608878 212609348 -69584316 - L1MB3 LINE L1 -8 6175 5716 432 55 0 0 chr1 212609348 212609403 -69584261 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2280 82 0 4 chr1 212609403 212609684 -69583980 - AluSc SINE Alu -29 280 1 2594 140 74 54 chr1 212609684 212609717 -69583947 - L1MB3 LINE L1 -467 5716 5685 815 142 0 24 chr1 212609717 212609844 -69583820 - FLAM_C SINE Alu -9 124 1 2594 140 74 54 chr1 212609844 212609916 -69583748 - L1MB3 LINE L1 -498 5685 5586 1097 223 53 0 chr1 212610273 212610520 -69583144 + MIR SINE MIR 2 261 -1 913 163 7 7 chr1 212610530 212610683 -69582981 - AluJb SINE Alu -23 289 137 48 0 0 0 chr1 212610729 212610777 -69582887 + AT_rich Low_complexity Low_complexity 1 48 0 345 237 13 0 chr1 212611803 212611879 -69581785 - MIR3 SINE MIR -11 197 121 27 29 0 0 chr1 212612511 212612545 -69581119 + AT_rich Low_complexity Low_complexity 1 34 0 301 235 0 15 chr1 212613718 212613786 -69579878 + L2 LINE L2 3018 3084 -188 13795 114 49 23 chr1 212613845 212614301 -69579363 - Tigger1 DNA MER2_type -4 2414 1971 1501 184 0 65 chr1 212614301 212614622 -69579042 + AluJo SINE Alu 1 300 -12 13795 114 49 23 chr1 212614622 212616463 -69577201 - Tigger1 DNA MER2_type -447 1971 52 6097 66 2 2 chr1 212616463 212617251 -69576413 + L1PA7 LINE L1 5364 6151 -3 13795 114 49 23 chr1 212617251 212617296 -69576368 - Tigger1 DNA MER2_type -2366 52 10 419 358 22 0 chr1 212617321 212617455 -69576209 + L2 LINE L2 3176 3312 -1 524 228 148 0 chr1 212617504 212617653 -69576011 + MIR SINE MIR 92 262 0 3173 133 18 4 chr1 212617974 212618464 -69575200 - LOR1a LTR ERV1 0 497 1 550 118 0 12 chr1 212618472 212618557 -69575107 - LOR1a-int LTR ERV1 -7 8113 8030 * 7431 137 35 39 chr1 212618556 212619876 -69573788 - LOR1a-int LTR ERV1 -2056 6064 4749 968 34 0 0 chr1 212619876 212619994 -69573670 + L1PA4 LINE L1 6035 6152 -3 831 69 0 0 chr1 212620027 212620128 -69573536 + AluSg SINE Alu 1 101 -209 18568 98 46 39 chr1 212620129 212620836 -69572828 - LOR1a-int LTR ERV1 -4789 3331 2630 1906 161 0 41 chr1 212620836 212621153 -69572511 + AluJo SINE Alu 1 304 -8 18568 98 46 39 chr1 212621153 212621574 -69572090 - LOR1a-int LTR ERV1 -5490 2630 2213 2248 115 0 0 chr1 212621574 212621870 -69571794 + AluSx SINE Alu 1 296 -16 18568 98 46 39 chr1 212621870 212622365 -69571299 - LOR1a-int LTR ERV1 -5907 2213 1723 1808 134 34 47 chr1 212622365 212622663 -69571001 - AluJb SINE Alu -6 306 13 18568 98 46 39 chr1 212622663 212624345 -69569319 - LOR1a-int LTR ERV1 -6397 1723 1 2941 127 51 2 chr1 212624345 212624819 -69568845 - LOR1a LTR ERV1 0 497 1 180 125 0 0 chr1 212625197 212625229 -69568435 + (A)n Simple_repeat Simple_repeat 1 32 0 3416 119 113 83 chr1 212625569 212626331 -69567333 + LTR1 LTR ERV1 1 785 0 2906 13 0 0 chr1 212626631 212626949 -69566715 + AluYb8 SINE Alu 1 318 0 249 211 0 0 chr1 212627093 212627150 -69566514 + CT-rich Low_complexity Low_complexity 4 60 0 185 364 18 0 chr1 212627203 212627258 -69566406 + L2 LINE L2 3141 3196 -76 209 200 0 0 chr1 212627289 212627329 -69566335 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2580 133 44 35 chr1 212628374 212628470 -69565194 + LOR1b LTR ERV1 1 95 -366 2280 114 3 0 chr1 212628470 212628777 -69564887 - AluSg SINE Alu -2 308 1 2580 133 44 35 chr1 212628777 212629137 -69564527 + LOR1b LTR ERV1 95 461 0 232 211 96 0 chr1 212629314 212629366 -69564298 + L2 LINE L2 3216 3272 0 611 296 102 0 chr1 212629459 212629665 -69563999 + MIR SINE MIR 20 246 -16 199 161 0 0 chr1 212630014 212630045 -69563619 - L2 LINE L2 -105 3167 3137 2842 3 0 0 chr1 212630045 212630351 -69563313 - AluY SINE Alu -5 306 1 737 67 0 9 chr1 212633062 212633167 -69560497 + (TTCC)n Simple_repeat Simple_repeat 3 106 0 1964 120 0 32 chr1 212633169 212633453 -69560211 - AluSx SINE Alu -37 275 1 237 311 0 0 chr1 212634255 212634329 -69559335 - tRNA-Ile-ATT tRNA tRNA -3 74 1 511 285 50 6 chr1 212635565 212635744 -69557920 - L1MC4a LINE L1 -1879 5929 5743 449 117 39 0 chr1 212637239 212637316 -69556348 - MADE1 DNA Mariner 0 80 1 403 175 18 26 chr1 212638860 212638974 -69554690 + Charlie5 DNA MER1_type 2512 2624 0 228 368 125 28 chr1 212638974 212639262 -69554402 + L2 LINE L2 2661 2976 -338 396 243 59 52 chr1 212639413 212639549 -69554115 + L2 LINE L2 3177 3313 0 1675 167 26 0 chr1 212639706 212639976 -69553688 + AluJo SINE Alu 1 277 -35 189 0 0 0 chr1 212639977 212639998 -69553666 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1674 197 23 10 chr1 212640028 212640328 -69553336 + AluJo SINE Alu 6 309 -3 1101 146 60 5 chr1 212640329 212640528 -69553136 - MER46A DNA MER2_type -25 211 2 2503 113 56 47 chr1 212640879 212641305 -69552359 + MSTB1 LTR MaLR 1 430 -2 1356 193 218 35 chr1 212641370 212641805 -69551859 - MLT2B2 LTR ERVL 0 515 1 290 353 50 67 chr1 212642112 212642395 -69551269 + L2 LINE L2 2916 3193 -79 2378 92 6 19 chr1 212642412 212642727 -69550937 + AluSq SINE Alu 1 311 -2 229 274 0 0 chr1 212642762 212642813 -69550851 + L2 LINE L2 3257 3307 -6 342 231 107 8 chr1 212642941 212643062 -69550602 - MLT1J LTR MaLR 0 511 379 842 130 0 8 chr1 212643173 212643296 -69550368 - AluSq/x SINE Alu -188 124 3 189 0 0 0 chr1 212643995 212644016 -69549648 + (CA)n Simple_repeat Simple_repeat 2 22 0 6483 133 54 20 chr1 212645485 212647127 -69546537 + L1MA4 LINE L1 4081 5826 -474 342 0 0 0 chr1 212647127 212647165 -69546499 + (CA)n Simple_repeat Simple_repeat 2 39 0 6483 133 54 20 chr1 212647165 212647627 -69546037 + L1MA4 LINE L1 5826 6271 -29 245 149 0 0 chr1 212648112 212648159 -69545505 - Alu SINE Alu -8 294 248 1891 134 11 0 chr1 212748321 212748605 -69445059 - AluSx SINE Alu -24 288 2 292 306 74 77 chr1 212749389 212749725 -69443939 - MLT1I LTR MaLR -7 402 68 1490 133 18 96 chr1 212749966 212750298 -69443366 - AluJo SINE Alu -6 306 1 21 0 0 0 chr1 212750302 212750323 -69443341 + AT_rich Low_complexity Low_complexity 1 21 0 328 211 196 23 chr1 212750622 212750750 -69442914 - MIR3 SINE MIR -23 185 40 21 0 0 0 chr1 212751437 212751458 -69442206 + AT_rich Low_complexity Low_complexity 1 21 0 382 201 174 42 chr1 212751803 212751947 -69441717 + MIR SINE MIR 42 204 -58 308 250 57 0 chr1 212753700 212753788 -69439876 - L3b LINE CR1 -146 1437 1345 290 330 136 39 chr1 212754696 212754954 -69438710 + L2 LINE L2 2965 3247 -25 188 303 182 0 chr1 212759359 212759458 -69434206 + L3b LINE CR1 1242 1358 -225 261 294 109 8 chr1 212759557 212759676 -69433988 - L2 LINE L2 -6 3266 3136 185 366 61 23 chr1 212759850 212759981 -69433683 + L2 LINE L2 3116 3251 -21 201 254 74 31 chr1 212760016 212760149 -69433515 + MIR SINE MIR 16 149 -61 460 180 60 60 chr1 212761528 212761678 -69431986 + Charlie5 DNA MER1_type 40 189 -2423 2283 65 10 0 chr1 212761678 212761970 -69431694 - AluY SINE Alu -16 295 1 1199 164 18 29 chr1 212761987 212762262 -69431402 + Charlie5 DNA MER1_type 2352 2623 0 190 262 24 0 chr1 212763161 212763245 -69430419 + GA-rich Low_complexity Low_complexity 3 88 0 1209 235 111 39 chr1 212764151 212764564 -69429100 + L1ME3A LINE L1 5728 6170 0 2001 272 11 31 chr1 212765566 212766206 -69427458 + L1M4 LINE L1 105 731 -5811 * 10612 222 31 22 chr1 212766201 212766472 -69427192 + L1M4 LINE L1 2647 2914 -3730 2259 96 0 0 chr1 212766472 212766763 -69426901 + AluY SINE Alu 1 291 -20 10612 222 31 22 chr1 212766763 212769605 -69424059 + L1M4 LINE L1 2914 5789 -855 479 229 0 8 chr1 212769699 212769817 -69423847 + MER53 DNA DNA 1 117 -72 432 276 59 0 chr1 212769854 212770006 -69423658 - MER5A DNA MER1_type -28 161 1 3376 145 16 13 chr1 212771145 212771821 -69421843 + L1 LINE L1 4213 4890 -1256 187 326 109 0 chr1 212772049 212772141 -69421523 + MIR3 SINE MIR 73 174 -34 189 315 22 22 chr1 212773392 212773481 -69420183 - L3b LINE CR1 -227 1356 1268 241 333 11 11 chr1 212774296 212774383 -69419281 - MIR SINE MIR -60 148 62 472 300 150 0 chr1 212774821 212775048 -69418616 + MIR SINE MIR 2 262 0 292 156 156 0 chr1 212775827 212775904 -69417760 + MLT1I LTR MaLR 320 408 -1 428 273 137 27 chr1 212776901 212777084 -69416580 - MIR SINE MIR -55 207 5 342 368 79 9 chr1 212777693 212778022 -69415642 + L1M4 LINE L1 3326 3677 -2469 204 40 0 0 chr1 212778025 212778050 -69415614 + (CA)n Simple_repeat Simple_repeat 2 26 0 386 263 153 10 chr1 212778055 212778264 -69415400 + L1P LINE L1 3700 3938 -2208 396 108 0 40 chr1 212778429 212778503 -69415161 + L1PA16 LINE L1 6096 6166 0 21 0 0 0 chr1 212778515 212778536 -69415128 + AT_rich Low_complexity Low_complexity 1 21 0 1861 148 6 25 chr1 212778651 212778969 -69414695 + AluSx SINE Alu 1 312 0 995 187 6 0 chr1 212779925 212780091 -69413573 + FAM SINE Alu 1 167 -8 2193 119 13 0 chr1 212781406 212781709 -69411955 + AluSx SINE Alu 1 307 -5 2297 103 3 3 chr1 212782550 212782852 -69410812 - AluSq SINE Alu -11 302 1 23 54 0 0 chr1 212783888 212783925 -69409739 + AT_rich Low_complexity Low_complexity 1 37 0 309 323 66 24 chr1 212783969 212784136 -69409528 - MIR SINE MIR -29 233 60 227 304 230 15 chr1 212784811 212784946 -69408718 + L2 LINE L2 3109 3272 0 287 303 87 36 chr1 212784975 212785170 -69408494 - MER102b DNA MER1_type -11 330 126 2906 143 48 0 chr1 212785622 212786127 -69407537 - L1MB7 LINE L1 -9 6175 5647 23 0 0 0 chr1 212786160 212786183 -69407481 + AT_rich Low_complexity Low_complexity 1 23 0 403 246 92 23 chr1 212786191 212786321 -69407343 - MIR SINE MIR -14 248 110 452 212 69 85 chr1 212787007 212787183 -69406481 + MIR SINE MIR 36 218 -44 358 257 89 0 chr1 212787372 212787473 -69406191 + MLT1J LTR MaLR 3 112 -399 607 193 0 9 chr1 212787473 212787582 -69406082 + L2 LINE L2 3199 3306 -7 414 370 42 69 chr1 212787637 212788086 -69405578 - L2 LINE L2 -1 3271 2835 710 251 57 13 chr1 212789348 212789575 -69404089 - MIR SINE MIR -19 243 7 601 214 53 8 chr1 212790193 212790324 -69403340 + L2 LINE L2 3134 3270 -2 2564 80 0 0 chr1 212791306 212791617 -69402047 - AluY SINE Alu 0 311 1 293 250 107 0 chr1 212791618 212791702 -69401962 - MIR SINE MIR -70 192 100 2288 78 3 0 chr1 212791749 212792033 -69401631 - AluSx SINE Alu -27 285 1 261 229 0 33 chr1 212792265 212792326 -69401338 + MIR SINE MIR 79 137 -125 201 195 0 0 chr1 212794263 212794304 -69399360 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 192 395 35 12 chr1 212794349 212794435 -69399229 + MIR SINE MIR 41 128 -80 1710 76 31 5 chr1 212794746 212794970 -69398694 + MER30 DNA MER1_type 1 230 0 1189 280 61 23 chr1 212795013 212795681 -69397983 - L1ME3A LINE L1 -220 5933 5238 565 290 81 26 chr1 212795791 212796325 -69397339 - L1ME3A LINE L1 -1428 4701 4139 1322 289 89 11 chr1 212796400 212797261 -69396403 - L1ME3A LINE L1 -2131 3998 3070 241 300 64 16 chr1 212797319 212797569 -69396095 - L1ME3A LINE L1 -3223 2906 2645 590 255 52 58 chr1 212797986 212798105 -69395559 - L1MEd LINE L1 -4705 1605 1487 2534 42 0 13 chr1 212798105 212798412 -69395252 - AluY SINE Alu -8 303 1 590 255 52 58 chr1 212798412 212798889 -69394775 - L1MEd LINE L1 -4823 1487 977 231 186 68 0 chr1 212800015 212800074 -69393590 + MLT1J LTR MaLR 439 501 -10 255 262 94 0 chr1 212800093 212800242 -69393422 + L1MC/D LINE L1 5582 5744 -2064 282 213 205 0 chr1 212800269 212800391 -69393273 + L1MC/D LINE L1 5713 5859 -1949 1099 237 135 99 chr1 212800414 212800971 -69392693 + MLT1G LTR MaLR 9 572 -18 504 267 67 50 chr1 212803443 212803582 -69390082 - L1ME LINE L1 -355 5766 5631 2272 84 3 0 chr1 212803582 212803905 -69389759 + AluSp SINE Alu 1 324 0 504 267 67 50 chr1 212803905 212804064 -69389600 - L1ME LINE L1 -490 5631 5462 1668 250 88 24 chr1 212804090 212804753 -69388911 + HsTC2a DNA Tc2 3 707 -37 197 339 85 8 chr1 212805172 212805290 -69388374 - L2 LINE L2 0 3272 3146 1524 209 117 54 chr1 212805292 212805726 -69387938 + L1MC4 LINE L1 7291 7789 -253 1678 192 3 3 chr1 212805726 212806013 -69387651 + AluJo SINE Alu 3 289 -23 1524 209 117 54 chr1 212806013 212806285 -69387379 + L1MC4 LINE L1 7789 8042 0 21 36 0 0 chr1 212807026 212807054 -69386610 + AT_rich Low_complexity Low_complexity 1 28 0 424 206 112 0 chr1 212807481 212807588 -69386076 - Charlie8 DNA MER1_type -2228 189 71 764 331 124 50 chr1 212810158 212810309 -69383355 - L2 LINE L2 -14 3258 3119 2205 129 0 0 chr1 212810309 212810612 -69383052 + AluSx SINE Alu 1 303 -9 764 331 124 50 chr1 212810612 212811852 -69381812 - L2 LINE L2 -153 3119 1765 224 268 196 0 chr1 212811844 212811941 -69381723 + L2 LINE L2 3194 3309 -4 * 225 307 241 6 chr1 212812093 212812259 -69381405 - L2 LINE L2 -1882 1432 1228 1119 192 83 79 chr1 212813864 212814271 -69379393 - MER69 DNA AcHobo 0 2526 2118 * 1234 233 93 50 chr1 212814268 212814710 -69378954 - MER69 DNA AcHobo -1584 942 482 886 227 187 3 chr1 212814760 212815059 -69378605 - MER69 DNA AcHobo -872 354 1 528 330 53 14 chr1 212815060 212815269 -69378395 + MIR SINE MIR 46 262 0 594 161 0 0 chr1 212815469 212815562 -69378102 + FRAM SINE Alu 70 162 -14 461 326 112 23 chr1 212817763 212818067 -69375597 + L2 LINE L2 2935 3265 -48 829 257 91 4 chr1 212818153 212818418 -69375246 - MLT1F LTR MaLR -246 296 9 2004 160 47 18 chr1 212818580 212818962 -69374702 + MSTD LTR MaLR 4 396 0 409 73 0 0 chr1 212819594 212819649 -69374015 + MSTD LTR MaLR 3 57 -339 185 329 40 0 chr1 212821410 212821486 -69372178 - MIR3 SINE MIR -12 196 118 2208 117 13 0 chr1 212821618 212821926 -69371738 - AluSx SINE Alu 0 312 1 349 325 27 37 chr1 212824603 212824791 -69368873 - MER5A DNA MER1_type -2 187 2 262 217 141 0 chr1 212826780 212826872 -69366792 - Charlie8 DNA MER1_type -2144 273 169 373 250 30 0 chr1 212826883 212826983 -69366681 + L1ME3A LINE L1 6063 6165 -5 703 216 22 43 chr1 212828896 212829081 -69364583 + MIR SINE MIR 44 224 -38 441 0 0 0 chr1 212829092 212829141 -69364523 + (TTCC)n Simple_repeat Simple_repeat 3 51 0 1784 188 10 0 chr1 212829168 212829466 -69364198 - AluJb SINE Alu -9 303 3 326 301 129 12 chr1 212829611 212829774 -69363890 - MIR SINE MIR 0 262 81 197 349 53 38 chr1 212831560 212831692 -69361972 + L2 LINE L2 2916 3049 -223 502 236 9 0 chr1 212831898 212832008 -69361656 + MIR SINE MIR 106 216 -46 238 324 95 0 chr1 212832051 212832156 -69361508 + MIR SINE MIR 84 198 -64 480 339 61 6 chr1 212832490 212832655 -69361009 - MIR3 SINE MIR -2 206 33 368 350 39 22 chr1 212832711 212832891 -69360773 + MIR SINE MIR 47 229 -33 319 299 97 67 chr1 212834110 212834378 -69359286 + L1M2 LINE L1 995 1270 -5579 354 23 0 0 chr1 212835024 212835067 -69358597 + (TG)n Simple_repeat Simple_repeat 2 44 0 2064 125 0 29 chr1 212835636 212835948 -69357716 - AluJb SINE Alu -9 303 1 229 306 159 56 chr1 212836258 212836617 -69357047 + L2 LINE L2 1562 1957 -1357 209 348 11 0 chr1 212836731 212836820 -69356844 + L2 LINE L2 2220 2309 -1005 201 333 0 0 chr1 212836838 212836889 -69356775 - L2 LINE L2 -85 3187 3137 2490 97 40 3 chr1 212837192 212837543 -69356121 + THE1B LTR MaLR 1 364 0 24 35 0 53 chr1 212837959 212838016 -69355648 + AT_rich Low_complexity Low_complexity 1 54 0 301 297 99 0 chr1 212838362 212838473 -69355191 + MIR SINE MIR 20 141 -67 238 299 104 0 chr1 212839211 212839288 -69354376 - L2 LINE L2 0 3272 3188 4426 188 27 43 chr1 212839435 212840976 -69352688 + L1MA1 LINE L1 4517 6028 -274 * 4839 80 28 3 chr1 212840411 212841124 -69352540 + L1PA13 LINE L1 5430 6160 -3 4404 140 52 2 chr1 212841367 212842190 -69351474 + L1MB3 LINE L1 5319 6182 -1 1133 199 68 18 chr1 212842195 212842532 -69351132 + L1M4 LINE L1 3839 4192 -1954 249 253 81 0 chr1 212842673 212842772 -69350892 - L1ME4a LINE L1 -30 6091 5985 28 0 0 0 chr1 212843031 212843059 -69350605 + AT_rich Low_complexity Low_complexity 1 28 0 249 244 49 73 chr1 212843128 212843251 -69350413 - L1ME3A LINE L1 -88 6082 5963 1991 159 54 13 chr1 212843292 212843681 -69349983 + MLT2D LTR ERVL 1 405 -9 2047 162 53 9 chr1 212843728 212844160 -69349504 - L1MB8 LINE L1 -27 6649 6199 262 250 0 0 chr1 212844393 212844453 -69349211 - L1MB8 LINE L1 -510 6158 6099 225 223 132 56 chr1 212844491 212844688 -69348976 - L1P4 LINE L1 -698 5468 5257 412 294 47 47 chr1 212844689 212844792 -69348872 - L1MB8 LINE L1 -922 5722 5620 2484 88 125 27 chr1 212844792 212845200 -69348464 + LTR7 LTR ERV1 1 448 -2 412 294 47 47 chr1 212845200 212845307 -69348357 - L1MB8 LINE L1 -1023 5621 5512 449 253 47 0 chr1 212845540 212845690 -69347974 - L1MB8 LINE L1 -1455 5189 5033 1116 232 47 45 chr1 212846934 212847551 -69346113 - L1MB8 LINE L1 -4861 1681 1125 1396 298 118 11 chr1 212847695 212848349 -69345315 + L2 LINE L2 2277 2999 -314 465 222 16 48 chr1 212848356 212848482 -69345182 + L2 LINE L2 3173 3294 -19 1486 109 36 5 chr1 212849019 212849240 -69344424 - MER30 DNA MER1_type 0 230 3 181 235 15 44 chr1 212849285 212849353 -69344311 - MIR SINE MIR -12 250 185 189 256 0 0 chr1 212849950 212849989 -69343675 - MIR SINE MIR -64 144 106 335 228 13 25 chr1 212850092 212850171 -69343493 - L2 LINE L2 -1 3312 3235 388 274 0 0 chr1 212850323 212850407 -69343257 - L2 LINE L2 0 3272 3189 2364 106 3 0 chr1 212850514 212850817 -69342847 - AluSx SINE Alu -3 309 6 570 286 62 13 chr1 212851541 212851768 -69341896 + MIR SINE MIR 6 243 -19 284 329 221 0 chr1 212851840 212851980 -69341684 - MIR SINE MIR -43 219 49 1124 261 113 51 chr1 212853704 212854560 -69339104 + HAL1 LINE L1 1591 2499 -8 207 188 108 36 chr1 212854767 212854851 -69338813 - MIR SINE MIR -112 150 64 29 70 0 0 chr1 212856591 212856648 -69337016 + AT_rich Low_complexity Low_complexity 1 57 0 275 257 69 46 chr1 212856670 212856845 -69336819 - L1MC4a LINE L1 -1906 5902 5724 1802 177 0 13 chr1 212856856 212857245 -69336419 - AluJo SINE Alu 0 387 3 2300 112 0 0 chr1 212857257 212857562 -69336102 - AluY SINE Alu -6 305 1 238 138 46 15 chr1 212858355 212858420 -69335244 + (TA)n Simple_repeat Simple_repeat 2 68 0 541 323 97 0 chr1 212859153 212859339 -69334325 + MIR SINE MIR 4 207 -55 693 156 45 89 chr1 212859353 212859532 -69334132 + MIR SINE MIR 92 262 0 289 211 0 0 chr1 212860347 212860418 -69333246 - L1MB4 LINE L1 0 6180 6110 396 213 0 90 chr1 212861692 212861759 -69331905 - L1MC4a LINE L1 -450 5671 5618 2494 76 0 0 chr1 212861759 212862061 -69331603 + AluY SINE Alu 2 303 -8 396 213 0 90 chr1 212862061 212862115 -69331549 - L1MC4a LINE L1 -503 5618 5561 1689 192 14 7 chr1 212862349 212862636 -69331028 + AluJb SINE Alu 1 289 -23 574 133 71 0 chr1 212862728 212862826 -69330838 + MER63 DNA MER1_type 1 731 -105 300 355 21 19 chr1 212864017 212864174 -69329490 - MIR SINE MIR -63 145 19 321 316 96 0 chr1 212864292 212864428 -69329236 - MARNA DNA Mariner -9 577 429 775 332 16 4 chr1 212864714 212864967 -69328697 - MIR SINE MIR 0 262 7 697 260 132 54 chr1 212865824 212866270 -69327394 - MLT1J LTR MaLR -30 481 1 181 163 23 47 chr1 212866913 212866956 -69326708 + L2 LINE L2 2398 2439 -875 539 225 179 6 chr1 212867386 212867559 -69326105 + L2 LINE L2 2596 2798 -516 201 213 88 62 chr1 212867563 212867643 -69326021 + L2 LINE L2 1991 2072 -1242 863 259 42 25 chr1 212869181 212869417 -69324247 + MIR SINE MIR 8 247 -15 2308 153 53 26 chr1 212871375 212871792 -69321872 - MSTA LTR MaLR 0 428 1 208 294 0 0 chr1 212871794 212871845 -69321819 - L2 LINE L2 -7 3306 3256 269 268 174 6 chr1 212872316 212872489 -69321175 - L1ME3 LINE L1 -221 5949 5748 778 254 153 21 chr1 212872498 212873300 -69320364 - L1ME3 LINE L1 -556 5606 4695 804 209 77 19 chr1 212873306 212873536 -69320128 + MLT1F1 LTR MaLR 1 239 -328 456 286 22 70 chr1 212873821 212874006 -69319658 + MIR3 SINE MIR 5 180 -28 371 239 73 37 chr1 212875261 212875370 -69318294 - L2 LINE L2 -10 3303 3191 213 39 0 0 chr1 212875725 212875751 -69317913 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 257 291 128 74 chr1 212875820 212875939 -69317725 - L1MC/D LINE L1 -2071 5737 5601 1924 150 3 3 chr1 212875939 212876233 -69317431 - AluSx SINE Alu -18 294 1 257 291 128 74 chr1 212876233 212876316 -69317348 - L1MC/D LINE L1 -2207 5601 5524 458 289 63 32 chr1 212876599 212876789 -69316875 - MER91A DNA MER1_type 0 196 1 277 283 49 73 chr1 212877197 212877402 -69316262 - L1ME3A LINE L1 -9 6161 5962 27 67 4 0 chr1 212880211 212880316 -69313348 + AT_rich Low_complexity Low_complexity 1 69 0 189 0 0 0 chr1 212880909 212880930 -69312734 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1419 239 28 0 chr1 212881210 212881537 -69312127 + L2 LINE L2 2129 2464 -850 198 0 0 0 chr1 212881546 212881568 -69312096 + (CA)n Simple_repeat Simple_repeat 2 23 0 2232 148 51 29 chr1 212881568 212882021 -69311643 - L1MC2 LINE L1 -20 6718 6256 * 4210 194 66 13 chr1 212882019 212882756 -69310908 - L1MC2 LINE L1 -743 5797 5078 2202 128 0 10 chr1 212882756 212883068 -69310596 - AluSx SINE Alu -3 309 1 4210 194 66 13 chr1 212883068 212883511 -69310153 - L1MC2 LINE L1 -1462 5078 4660 472 265 90 42 chr1 212883513 212883679 -69309985 + L2 LINE L2 2469 2642 -672 * 543 249 46 76 chr1 212883675 212883872 -69309792 + L2 LINE L2 3120 3310 -3 2231 108 0 16 chr1 212883999 212884304 -69309360 + AluSx SINE Alu 2 301 -11 330 87 0 0 chr1 212884304 212884350 -69309314 + (TA)n Simple_repeat Simple_repeat 2 47 0 370 103 86 0 chr1 212887528 212887586 -69306078 - L1M4 LINE L1 -1239 4907 4845 1056 282 84 24 chr1 212887670 212888265 -69305399 + L1MEc LINE L1 1739 2369 -4027 338 245 116 23 chr1 212888266 212888482 -69305182 - L1MC2 LINE L1 -4939 1601 1366 967 154 12 12 chr1 212890080 212890249 -69303415 - MER58B DNA MER1_type -4 337 169 28 48 0 0 chr1 212890535 212890577 -69303087 + AT_rich Low_complexity Low_complexity 1 42 0 1911 212 157 9 chr1 212890591 212891044 -69302620 - MLT1E LTR MaLR 0 593 74 363 324 36 36 chr1 212891762 212891901 -69301763 + L2 LINE L2 3134 3272 0 235 214 14 57 chr1 212892408 212892478 -69301186 - MER103 DNA DNA -9 157 91 354 80 0 0 chr1 212892545 212892595 -69301069 + (TG)n Simple_repeat Simple_repeat 2 51 0 391 276 60 34 chr1 212892951 212893216 -69300448 - L1MEc LINE L1 -4708 1602 1331 2343 86 0 51 chr1 212893273 212893624 -69300040 - MER75 DNA T2_type -1 513 181 2597 177 47 100 chr1 212893624 212894375 -69299289 - MER50 LTR ERV1 -23 711 1 1251 139 5 0 chr1 212894375 212894558 -69299106 - MER75 DNA T2_type -329 185 2 1214 278 88 20 chr1 212894577 212895168 -69298496 - L1MEc LINE L1 -4908 1211 581 284 285 146 7 chr1 212895190 212895334 -69298330 + L1M4 LINE L1 4759 4922 -1224 228 155 134 41 chr1 212895880 212895977 -69297687 - L1M4 LINE L1 -798 5348 5243 1191 213 105 125 chr1 212895996 212896192 -69297472 + L1MC5 LINE L1 6692 6890 -1071 261 83 0 0 chr1 212896192 212896228 -69297436 + (TTCTG)n Simple_repeat Simple_repeat 3 38 0 180 111 0 0 chr1 212896235 212896262 -69297402 + (CTACT)n Simple_repeat Simple_repeat 5 31 0 1191 213 105 125 chr1 212896262 212896387 -69297277 + L1MC5 LINE L1 6896 7022 -939 1451 179 4 29 chr1 212896387 212896661 -69297003 + AluJo SINE Alu 1 267 -45 1191 213 105 125 chr1 212896661 212896683 -69296981 + L1MC5 LINE L1 7022 7043 -918 189 0 0 0 chr1 212896683 212896704 -69296960 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1191 213 105 125 chr1 212896704 212896811 -69296853 + L1MC5 LINE L1 7043 7151 -810 3057 43 0 3 chr1 212896811 212897187 -69296477 + L1PA5 LINE L1 5780 6154 0 1191 213 105 125 chr1 212897187 212897470 -69296194 + L1MC5 LINE L1 7151 7421 -540 2396 191 71 28 chr1 212897492 212897970 -69295694 - L1ME2 LINE L1 -242 5922 5386 2148 110 3 0 chr1 212897970 212898272 -69295392 - AluSx SINE Alu 0 303 1 2396 191 71 28 chr1 212898272 212898660 -69295004 - L1ME2 LINE L1 -778 5386 5016 408 292 29 0 chr1 212898644 212898815 -69294849 - L1ME2 LINE L1 -2798 3348 3173 * 1462 244 74 16 chr1 212898812 212899299 -69294365 - L1ME2 LINE L1 -3360 2786 2272 * 4065 165 27 10 chr1 212899296 212900077 -69293587 - L1MB7 LINE L1 0 6184 5391 939 291 30 50 chr1 212900440 212900839 -69292825 - LTR16C LTR ERVL -3 488 98 2039 136 17 45 chr1 212901075 212901229 -69292435 + MER2 DNA MER2_type 1 158 -186 1770 188 0 0 chr1 212901229 212901521 -69292143 - AluJo SINE Alu -20 292 1 2039 136 17 45 chr1 212901521 212901720 -69291944 + MER2 DNA MER2_type 158 344 0 21 0 0 0 chr1 212902364 212902385 -69291279 + AT_rich Low_complexity Low_complexity 1 21 0 1354 279 95 50 chr1 212902459 212903270 -69290394 - L2 LINE L2 -39 3274 2424 2485 77 0 0 chr1 212903270 212903570 -69290094 + AluSx SINE Alu 1 300 -12 1354 279 95 50 chr1 212903570 212903685 -69289979 - L2 LINE L2 -889 2424 2316 988 182 10 21 chr1 212903685 212903877 -69289787 + MLT1A1 LTR MaLR 1 190 -175 263 126 9 216 chr1 212903877 212903988 -69289676 + L1PA16 LINE L1 6079 6166 0 223 241 69 69 chr1 212904000 212904087 -69289577 - L2 LINE L2 -1344 1970 1884 2372 42 56 0 chr1 212904130 212904414 -69289250 - AluY SINE Alu -11 300 1 826 147 0 0 chr1 212904442 212904558 -69289106 + FLAM_C SINE Alu 3 118 -25 363 261 109 0 chr1 212904732 212904870 -69288794 + MIR SINE MIR 110 262 0 586 294 7 7 chr1 212905921 212906064 -69287600 - MIR SINE MIR -108 154 12 4090 168 19 31 chr1 212906099 212906427 -69287237 - L1MB8 LINE L1 -55 6123 5793 2410 60 0 0 chr1 212906427 212906729 -69286935 + AluY SINE Alu 1 302 0 4090 168 19 31 chr1 212906729 212907227 -69286437 - L1MB8 LINE L1 -385 5793 5306 2495 81 0 0 chr1 212907228 212907537 -69286127 + AluY SINE Alu 1 309 -2 1493 161 3 62 chr1 212907541 212907833 -69285831 - AluJo SINE Alu -37 275 1 378 42 0 0 chr1 212908202 212908250 -69285414 + (CA)n Simple_repeat Simple_repeat 1 48 0 374 343 55 69 chr1 212908543 212908922 -69284742 - L2 LINE L2 -1 3271 2898 492 293 139 28 chr1 212909008 212909332 -69284332 + L2 LINE L2 2954 3313 0 563 210 43 1 chr1 212909503 212909728 -69283936 + ORSL DNA AcHobo 13 275 0 209 354 47 42 chr1 212910092 212910304 -69283360 - L2 LINE L2 -834 2480 2268 438 254 48 8 chr1 212911049 212911175 -69282489 + MIR SINE MIR 122 252 -10 451 269 74 47 chr1 212911268 212911392 -69282272 + MER5A DNA MER1_type 35 165 -24 876 121 15 0 chr1 212911392 212911524 -69282140 - L1PA16 LINE L1 -9 6157 6024 451 269 74 47 chr1 212911524 212911548 -69282116 + MER5A DNA MER1_type 165 187 -2 2208 102 3 0 chr1 212912275 212912560 -69281104 + AluSx SINE Alu 1 286 -26 2428 68 3 0 chr1 212914198 212914492 -69279172 + AluY SINE Alu 1 295 -16 319 240 26 115 chr1 212914896 212915003 -69278661 + L2 LINE L2 3117 3201 -112 1564 227 39 73 chr1 212915003 212915536 -69278128 + MLT2B1 LTR ERVL 2 516 -4 319 240 26 115 chr1 212915536 212915620 -69278044 + L2 LINE L2 3201 3291 -22 294 95 0 0 chr1 212915629 212915671 -69277993 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 33 25 0 0 chr1 212915677 212915717 -69277947 + AT_rich Low_complexity Low_complexity 1 40 0 441 295 52 42 chr1 212915763 212915956 -69277708 - MIR SINE MIR -22 240 46 42 65 0 0 chr1 212917063 212917140 -69276524 + AT_rich Low_complexity Low_complexity 1 77 0 298 235 181 60 chr1 212917292 212917441 -69276223 + MIR3 SINE MIR 16 182 -26 292 232 145 29 chr1 212917534 212917672 -69275992 + L2 LINE L2 2981 3134 -179 748 123 12 37 chr1 212917672 212917835 -69275829 + (TTCC)n Simple_repeat Simple_repeat 1 159 0 1240 161 9 19 chr1 212918081 212918141 -69275523 - MER3 DNA MER1_type 0 209 150 2437 44 58 0 chr1 212918141 212918435 -69275229 + AluY SINE Alu 1 311 0 1240 161 9 19 chr1 212918435 212918585 -69275079 - MER3 DNA MER1_type -59 150 1 196 206 163 76 chr1 212918607 212918699 -69274965 + L2 LINE L2 2584 2683 -631 353 311 25 0 chr1 212918715 212918834 -69274830 - L2 LINE L2 0 3272 3151 209 212 30 45 chr1 212918999 212919131 -69274533 + (GTGTG)n Simple_repeat Simple_repeat 1 130 0 2160 120 7 3 chr1 212919273 212919582 -69274082 + AluSx SINE Alu 1 310 -2 276 149 0 0 chr1 212919582 212919629 -69274035 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 2682 128 45 87 chr1 212919675 212920236 -69273428 + MER21A LTR ERV1 386 922 -9 2231 95 3 0 chr1 212920644 212920928 -69272736 - AluSp SINE Alu -28 285 1 1583 168 51 7 chr1 212920942 212921216 -69272448 - AluJo SINE Alu -26 286 1 225 333 43 0 chr1 212921388 212921481 -69272183 + MIR SINE MIR 166 262 0 609 275 11 22 chr1 212921502 212921680 -69271984 - MIR SINE MIR -5 257 82 2316 97 3 0 chr1 212921681 212921979 -69271685 + AluSg SINE Alu 1 299 -11 2551 61 0 3 chr1 212921990 212922300 -69271364 + AluY SINE Alu 1 309 -2 32 0 0 0 chr1 212922857 212922889 -69270775 + AT_rich Low_complexity Low_complexity 1 32 0 16055 128 30 3 chr1 212923056 212925407 -69268257 + Tigger1 DNA MER2_type 1 2416 -2 27 0 0 0 chr1 212925738 212925765 -69267899 + AT_rich Low_complexity Low_complexity 1 27 0 1327 170 47 151 chr1 212926333 212926756 -69266908 - MLT1B LTR MaLR -8 382 4 289 239 102 57 chr1 212926759 212926847 -69266817 - L2 LINE L2 -23 3249 3158 256 239 101 72 chr1 212927188 212927376 -69266288 - MIR SINE MIR -41 221 33 200 270 16 16 chr1 212927898 212927961 -69265703 - L2 LINE L2 -5 3267 3205 581 264 40 0 chr1 212927979 212928127 -69265537 - MER5C DNA MER1_type -167 157 4 663 332 111 19 chr1 212928183 212928544 -69265120 - MLT1I LTR MaLR -2 407 14 182 264 92 61 chr1 212928874 212929037 -69264627 + L3b LINE CR1 1268 1435 -148 260 293 9 38 chr1 212930720 212930826 -69262838 + MIR3 SINE MIR 105 207 -1 300 212 82 12 chr1 212931023 212931108 -69262556 + MIR SINE MIR 85 175 -87 1046 236 84 34 chr1 212931518 212931852 -69261812 - MLT1A1 LTR MaLR -4 463 1 401 250 40 30 chr1 212932322 212932422 -69261242 + L2 LINE L2 3208 3308 -5 * 941 228 68 8 chr1 212932412 212932662 -69261002 - L2 LINE L2 -122 3191 2927 415 189 0 9 chr1 212932672 212932755 -69260909 - MER5A DNA MER1_type -103 86 4 312 292 79 6 chr1 212932933 212933111 -69260553 + L1ME4a LINE L1 5930 6120 -1 23 33 0 0 chr1 212933171 212933201 -69260463 + AT_rich Low_complexity Low_complexity 1 30 0 2361 181 107 83 chr1 212933380 212933934 -69259730 - MLT1F1 LTR MaLR 0 567 1 1362 165 36 14 chr1 212934097 212934376 -69259288 - MER33 DNA MER1_type -17 307 23 365 339 68 56 chr1 212934455 212934777 -69258887 - L2 LINE L2 -564 2750 2425 191 111 0 28 chr1 212935431 212935467 -69258197 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 365 153 0 0 chr1 212935555 212935614 -69258050 - AluSq/x SINE Alu -168 134 76 194 91 30 0 chr1 212935699 212935732 -69257932 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 550 289 148 10 chr1 212935900 212936191 -69257473 - MER102b DNA MER1_type 0 341 11 1934 202 49 28 chr1 212936953 212937456 -69256208 + L1ME1 LINE L1 5650 6161 -5 353 267 12 5 chr1 212938176 212938283 -69255381 + MIR SINE MIR 19 124 -84 188 67 33 0 chr1 212938301 212938331 -69255333 + (TATAG)n Simple_repeat Simple_repeat 5 35 0 23 54 0 0 chr1 212938350 212938387 -69255277 + AT_rich Low_complexity Low_complexity 1 37 0 794 273 107 33 chr1 212938518 212938855 -69254809 + MLT1J2 LTR MaLR 75 436 -14 188 379 68 29 chr1 212939306 212939409 -69254255 - L2 LINE L2 -44 3228 3122 501 218 165 38 chr1 212940307 212940502 -69253162 + MIR SINE MIR 3 218 -44 597 274 66 18 chr1 212940800 212941026 -69252638 + MER46C DNA MER2_type 83 319 -19 347 275 110 11 chr1 212941136 212941273 -69252391 - MIR SINE MIR -58 150 5 185 247 59 82 chr1 212942023 212942108 -69251556 + L2 LINE L2 3142 3224 -48 213 308 122 9 chr1 212942284 212942391 -69251273 + MIR SINE MIR 74 192 -70 605 207 71 59 chr1 212942395 212942564 -69251100 + MLT1B LTR MaLR 3 173 -217 455 82 14 0 chr1 212942583 212942656 -69251008 + (TC)n Simple_repeat Simple_repeat 1 74 0 1138 190 5 0 chr1 212942664 212942859 -69250805 + MLT1B LTR MaLR 191 386 -4 2380 94 71 37 chr1 212943568 212943920 -69249744 - THE1B LTR MaLR 0 364 1 387 338 45 25 chr1 212944515 212944713 -69248951 - L2 LINE L2 0 3272 3071 221 81 0 27 chr1 212944895 212944932 -69248732 + (GAAA)n Simple_repeat Simple_repeat 4 39 0 24 0 0 0 chr1 212945227 212945251 -69248413 + AT_rich Low_complexity Low_complexity 1 24 0 425 296 27 43 chr1 212945877 212946063 -69247601 - L2 LINE L2 -4 3309 3127 237 327 129 0 chr1 212947185 212947286 -69246378 - MIR SINE MIR -144 118 5 2066 136 128 33 chr1 212947294 212947685 -69245979 + MSTA LTR MaLR 1 428 0 2061 130 0 3 chr1 212947830 212948130 -69245534 + AluSx SINE Alu 1 299 -13 2208 126 0 0 chr1 212948999 212949301 -69244363 + AluSc SINE Alu 1 302 -7 317 140 0 18 chr1 212949910 212949967 -69243697 - MLT1L LTR MaLR -13 602 547 425 282 21 94 chr1 212950007 212950241 -69243423 - MLT1L LTR MaLR -182 433 217 1536 166 36 20 chr1 212950560 212950861 -69242803 - L1MB3 LINE L1 -1 6182 5877 9220 171 16 6 chr1 212951098 212953485 -69240179 - L1PA14 LINE L1 -5 6156 3759 5650 194 7 11 chr1 212953487 212954651 -69239013 + L1PA14 LINE L1 2627 3785 -2361 296 368 48 16 chr1 212954665 212954790 -69238874 + L2 LINE L2 3125 3253 -19 190 336 53 15 chr1 212954887 212955018 -69238646 - L3b LINE CR1 -241 1342 1207 24 32 0 0 chr1 212955292 212955323 -69238341 + AT_rich Low_complexity Low_complexity 1 31 0 2450 83 0 10 chr1 212955816 212956129 -69237535 + AluSq SINE Alu 1 310 -3 2433 90 3 0 chr1 212956600 212956911 -69236753 + AluSp SINE Alu 1 312 -1 201 301 75 59 chr1 212957277 212957516 -69236148 - L2 LINE L2 -222 3050 2808 270 85 51 0 chr1 212957587 212957646 -69236018 + (CA)n Simple_repeat Simple_repeat 2 63 0 385 191 65 12 chr1 212957750 212957918 -69235746 + (CACAC)n Simple_repeat Simple_repeat 3 179 0 256 208 75 25 chr1 212957950 212958109 -69235555 + (CACAC)n Simple_repeat Simple_repeat 5 171 0 353 311 25 0 chr1 212958387 212958506 -69235158 + L2 LINE L2 3151 3272 0 196 206 163 76 chr1 212958522 212958614 -69235050 - L2 LINE L2 -631 2683 2584 1222 159 9 33 chr1 212958636 212958789 -69234875 + MER3 DNA MER1_type 1 149 -60 2442 41 58 0 chr1 212958789 212959081 -69234583 - AluY SINE Alu -2 309 1 1222 159 9 33 chr1 212959081 212959141 -69234523 + MER3 DNA MER1_type 149 209 0 799 123 12 35 chr1 212959387 212959558 -69234106 + (GGAA)n Simple_repeat Simple_repeat 1 167 0 292 232 145 29 chr1 212959558 212959696 -69233968 - L2 LINE L2 -179 3134 2981 298 235 181 60 chr1 212959789 212959938 -69233726 - MIR3 SINE MIR -26 182 16 42 65 0 0 chr1 212960090 212960167 -69233497 + AT_rich Low_complexity Low_complexity 1 77 0 416 295 52 42 chr1 212961274 212961467 -69232197 + MIR SINE MIR 46 240 -22 33 25 0 0 chr1 212961513 212961553 -69232111 + AT_rich Low_complexity Low_complexity 1 40 0 294 95 0 0 chr1 212961559 212961601 -69232063 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 296 240 26 115 chr1 212961610 212961694 -69231970 - L2 LINE L2 -22 3291 3232 1759 227 39 73 chr1 212961694 212962227 -69231437 - MLT2B1 LTR ERVL -4 516 2 296 240 26 115 chr1 212962227 212962334 -69231330 - L2 LINE L2 -81 3232 3117 2447 68 3 0 chr1 212962738 212963032 -69230632 - AluY SINE Alu -16 295 1 2222 102 3 0 chr1 212964670 212964955 -69228709 - AluSx SINE Alu -26 286 1 445 269 74 47 chr1 212965682 212965706 -69227958 - MER5A DNA MER1_type -2 187 165 940 121 15 0 chr1 212965706 212965838 -69227826 + L1PA16 LINE L1 6024 6157 -9 445 269 74 47 chr1 212965838 212965962 -69227702 - MER5A DNA MER1_type -24 165 35 427 254 48 8 chr1 212966055 212966181 -69227483 - MIR SINE MIR -10 252 122 219 354 47 42 chr1 212966926 212967138 -69226526 + L2 LINE L2 2268 2480 -834 579 210 43 1 chr1 212967502 212967727 -69225937 - ORSL DNA AcHobo 0 275 13 482 293 139 28 chr1 212967898 212968222 -69225442 - L2 LINE L2 0 3313 2954 370 346 55 69 chr1 212968308 212968687 -69224977 + L2 LINE L2 2898 3271 -1 396 40 0 0 chr1 212968980 212969030 -69224634 + (TG)n Simple_repeat Simple_repeat 1 50 0 1488 161 3 62 chr1 212969399 212969691 -69223973 + AluJo SINE Alu 1 275 -37 2567 68 0 0 chr1 212969695 212970004 -69223660 - AluY SINE Alu -2 309 1 416 198 103 26 chr1 212970505 212970621 -69223043 - L2 LINE L2 -1 3312 3188 1136 254 8 11 chr1 212970844 212971104 -69222560 - L1ME1 LINE L1 -7 6159 5901 323 188 129 59 chr1 212971104 212971205 -69222459 + Tigger4(Zombi) DNA MER2_type 2 109 -2622 266 95 0 24 chr1 212971175 212971217 -69222447 + Tigger4(Zombi) DNA MER2_type 1679 1719 -1012 * 16557 122 49 13 chr1 212971210 212973778 -69219886 + Tigger4(Zombi) DNA MER2_type 72 2731 0 7605 210 46 43 chr1 212973778 212973818 -69219846 - L1ME1 LINE L1 -278 5906 5868 198 0 0 0 chr1 212973818 212973840 -69219824 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2007 116 0 7 chr1 212973844 212974121 -69219543 - AluSg SINE Alu -35 275 1 7605 210 46 43 chr1 212974121 212974679 -69218985 - L1ME1 LINE L1 -318 5866 5311 1678 145 37 27 chr1 212974679 212974976 -69218688 - AluJo SINE Alu -2 310 11 7605 210 46 43 chr1 212974976 212975948 -69217716 - L1ME1 LINE L1 -873 5311 4344 2366 152 45 28 chr1 212975948 212976370 -69217294 - Tigger2a DNA MER2_type -3 431 3 7605 210 46 43 chr1 212976370 212977565 -69216099 - L1ME1 LINE L1 -1840 4344 3126 * 45140 36 1 7 chr1 212977555 212983739 -69209925 - L1PA4 LINE L1 -3 6152 2 2207 230 41 8 chr1 212983737 212984341 -69209323 - L1ME1 LINE L1 -2985 3161 2538 * 470 228 152 33 chr1 212984412 212984596 -69209068 + L2 LINE L2 3108 3313 0 216 0 0 0 chr1 212984820 212984844 -69208820 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 554 222 0 0 chr1 212984845 212984944 -69208720 - AluJb SINE Alu -92 220 122 893 148 0 0 chr1 212984946 212985122 -69208542 - FLAM_C SINE Alu 0 176 1 494 314 88 4 chr1 212985759 212985998 -69207666 - L2 LINE L2 -1038 2276 2018 1795 177 33 0 chr1 212986194 212986548 -69207116 + AluJo SINE Alu 2 365 0 1591 167 7 15 chr1 212986581 212986850 -69206814 + AluJo SINE Alu 1 267 -45 1519 177 29 32 chr1 212987046 212987356 -69206308 - AluJo SINE Alu -3 309 1 241 224 0 0 chr1 212987465 212987514 -69206150 - L2 LINE L2 0 3313 3265 523 261 69 21 chr1 212987538 212987706 -69205958 - MER5A DNA MER1_type -3 186 1 1416 215 48 43 chr1 212988593 212989011 -69204653 + MLT1J1 LTR MaLR 27 446 0 2054 146 0 0 chr1 212989235 212989552 -69204112 + AluSx SINE Alu 1 312 0 833 262 52 22 chr1 212989946 212990175 -69203489 - MIR SINE MIR -26 236 1 655 239 74 49 chr1 212991014 212991257 -69202407 - MIR SINE MIR -12 250 2 1286 271 120 22 chr1 212992004 212992546 -69201118 - MLT1G1 LTR MaLR 0 595 1 1337 281 93 2 chr1 212992677 212993119 -69200545 - L2 LINE L2 -9 3304 2823 2623 196 74 34 chr1 212993641 212994238 -69199426 - MLT1E2 LTR MaLR -1 625 5 472 284 71 13 chr1 212994652 212994807 -69198857 + LTR16A1 LTR ERVL 1 164 -293 192 77 0 0 chr1 212994826 212994852 -69198812 + (CATA)n Simple_repeat Simple_repeat 4 29 0 499 266 125 0 chr1 212994863 212995047 -69198617 + LTR16A1 LTR ERVL 247 453 -4 381 296 61 0 chr1 212995308 212995423 -69198241 + L2 LINE L2 3147 3268 -4 231 239 14 14 chr1 212996260 212996310 -69197354 + (TATATG)n Simple_repeat Simple_repeat 1 53 -18 2858 147 2 20 chr1 212996310 212996752 -69196912 - Tigger2a DNA MER2_type 0 434 1 231 239 14 14 chr1 212996752 212996772 -69196892 + (TATATG)n Simple_repeat Simple_repeat 52 71 0 1387 143 5 0 chr1 212996891 212997100 -69196564 + MER2 DNA MER2_type 1 210 -135 248 263 68 68 chr1 212997434 212997567 -69196097 - MIR3 SINE MIR -65 143 11 * 337 272 0 0 chr1 212997547 212997628 -69196036 + L2 LINE L2 3229 3309 -4 222 286 152 27 chr1 212997686 212997798 -69195866 + L2 LINE L2 3178 3303 -10 227 191 101 11 chr1 212999346 212999435 -69194229 - AluY SINE Alu 0 301 205 291 303 146 20 chr1 213001434 213001688 -69191976 + L2 LINE L2 1927 2212 -1102 345 210 91 14 chr1 213001762 213001905 -69191759 - L1ME4a LINE L1 -53 6068 5915 269 306 0 10 chr1 213002161 213002254 -69191410 - L1MC5 LINE L1 -535 7426 7334 925 150 0 0 chr1 213002254 213002387 -69191277 + FLAM_C SINE Alu 1 133 0 3583 165 12 94 chr1 213002722 213003475 -69190189 - LTR8 LTR ERV1 0 691 1 690 284 47 28 chr1 213003507 213003761 -69189903 - LTR33 LTR ERVL -52 469 211 316 314 37 0 chr1 213004529 213004643 -69189021 + MIR SINE MIR 30 150 -67 531 252 54 70 chr1 213004682 213004940 -69188724 + MIR SINE MIR 9 262 0 1767 177 182 99 chr1 213004951 213005112 -69188552 + MLT1E1 LTR MaLR 1 147 -507 2141 105 51 0 chr1 213005112 213005407 -69188257 - AluSx SINE Alu -2 310 1 1767 177 182 99 chr1 213005407 213005849 -69187815 + MLT1E1 LTR MaLR 147 654 0 429 309 91 53 chr1 213006261 213006776 -69186888 - L2 LINE L2 -99 3173 2552 988 292 46 46 chr1 213006893 213007304 -69186360 - L2 LINE L2 -4 3309 2899 1351 263 42 62 chr1 213007352 213007899 -69185765 - MLT1H LTR MaLR -13 536 1 1692 248 81 11 chr1 213007901 213008357 -69185307 - L2 LINE L2 -460 2854 2367 4166 148 13 24 chr1 213009100 213009674 -69183990 + MER50 LTR ERV1 1 567 -167 2574 59 3 0 chr1 213009674 213009979 -69183685 - AluY SINE Alu -5 306 1 4166 148 13 24 chr1 213009979 213010114 -69183550 + MER50 LTR ERV1 567 702 -32 1834 156 16 13 chr1 213010144 213010451 -69183213 + AluJb SINE Alu 1 308 -4 271 173 82 73 chr1 213011302 213011412 -69182252 - LTR41 LTR ERVL -6 767 657 557 195 54 103 chr1 213011870 213012055 -69181609 - LTR41 LTR ERVL -597 176 1 1162 197 29 8 chr1 213012089 213012333 -69181331 + L1MB3 LINE L1 5933 6181 -2 2485 84 0 0 chr1 213012489 213012799 -69180865 + AluY SINE Alu 1 310 -1 305 301 71 9 chr1 213013576 213013689 -69179975 + MIR SINE MIR 28 147 -115 9334 146 15 31 chr1 213014191 213014880 -69178784 - L1MA3 LINE L1 0 6305 5607 2462 83 0 0 chr1 213014880 213015182 -69178482 - AluY SINE Alu -9 302 1 9334 146 15 31 chr1 213015182 213017045 -69176619 - L1MA3 LINE L1 -698 5607 3799 2121 124 0 0 chr1 213017045 213017327 -69176337 - AluSg SINE Alu -22 288 7 9334 146 15 31 chr1 213017327 213017440 -69176224 - L1MA3 LINE L1 -2506 3799 3686 21 36 0 0 chr1 213017689 213017717 -69175947 + AT_rich Low_complexity Low_complexity 1 28 0 455 281 0 31 chr1 213017737 213017865 -69175799 - L2 LINE L2 -1 3312 3189 21 0 0 0 chr1 213017987 213018008 -69175656 + AT_rich Low_complexity Low_complexity 1 21 0 524 295 125 49 chr1 213018340 213018660 -69175004 - HAL1 LINE L1 -878 1629 1335 227 30 0 30 chr1 213018660 213018693 -69174971 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 821 85 19 0 chr1 213018699 213018805 -69174859 - HY1 scRNA scRNA -4 108 1 524 295 125 49 chr1 213018805 213018926 -69174738 - HAL1 LINE L1 -1176 1331 1221 501 17 0 0 chr1 213018926 213018984 -69174680 + (TC)n Simple_repeat Simple_repeat 2 59 0 524 295 125 49 chr1 213018984 213019124 -69174540 - HAL1 LINE L1 -1286 1221 995 189 94 0 0 chr1 213020282 213020314 -69173350 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1515 180 121 12 chr1 213020368 213020690 -69172974 + MLT1A1 LTR MaLR 9 365 0 4234 165 49 57 chr1 213020698 213020723 -69172941 + L1MB8 LINE L1 5188 5212 -966 1748 153 47 23 chr1 213020723 213021024 -69172640 + AluSx SINE Alu 1 308 -4 4234 165 49 57 chr1 213021024 213021103 -69172561 + L1MB8 LINE L1 5212 5290 -888 2460 77 0 0 chr1 213021103 213021401 -69172263 - AluY SINE Alu -13 298 1 4234 165 49 57 chr1 213021401 213021900 -69171764 + L1MB8 LINE L1 5290 5794 -384 2424 60 0 0 chr1 213021900 213022202 -69171462 - AluY SINE Alu 0 302 1 4234 165 49 57 chr1 213022202 213022530 -69171134 + L1MB8 LINE L1 5794 6123 -55 582 294 7 7 chr1 213022565 213022708 -69170956 + MIR SINE MIR 12 154 -108 336 261 109 0 chr1 213023759 213023897 -69169767 - MIR SINE MIR 0 262 110 841 160 0 0 chr1 213024062 213024187 -69169477 - FLAM_C SINE Alu -16 127 3 2396 42 56 0 chr1 213024215 213024499 -69169165 + AluY SINE Alu 1 300 -11 219 241 69 69 chr1 213024542 213024629 -69169035 + L2 LINE L2 1884 1970 -1344 276 126 9 216 chr1 213024641 213024752 -69168912 - L1PA16 LINE L1 0 6166 6079 1010 182 10 21 chr1 213024752 213024944 -69168720 - MLT1A1 LTR MaLR -175 190 1 1366 279 95 50 chr1 213024944 213025059 -69168605 + L2 LINE L2 2316 2424 -889 2507 77 0 0 chr1 213025059 213025359 -69168305 - AluSx SINE Alu -12 300 1 1366 279 95 50 chr1 213025359 213026170 -69167494 + L2 LINE L2 2424 3274 -39 21 0 0 0 chr1 213026244 213026265 -69167399 + AT_rich Low_complexity Low_complexity 1 21 0 2197 136 17 45 chr1 213026909 213027108 -69166556 - MER2 DNA MER2_type 0 344 158 1770 188 0 0 chr1 213027108 213027400 -69166264 + AluJo SINE Alu 1 292 -20 2197 136 17 45 chr1 213027400 213027554 -69166110 - MER2 DNA MER2_type -186 158 1 929 291 30 50 chr1 213027790 213028189 -69165475 + LTR16C LTR ERVL 98 488 -3 4193 165 27 10 chr1 213028552 213029333 -69164331 + L1MB7 LINE L1 5391 6184 0 1549 244 74 16 chr1 213029330 213029817 -69163847 + L1ME2 LINE L1 2272 2786 -3360 * 437 297 29 0 chr1 213029810 213029985 -69163679 + L1ME2 LINE L1 3169 3348 -2798 * 2495 186 76 32 chr1 213029969 213030357 -69163307 + L1ME2 LINE L1 5016 5386 -778 2162 110 3 0 chr1 213030357 213030659 -69163005 + AluSx SINE Alu 1 303 0 2495 186 76 32 chr1 213030659 213031137 -69162527 + L1ME2 LINE L1 5386 5922 -242 1293 212 105 126 chr1 213031159 213031442 -69162222 - L1MC5 LINE L1 -540 7421 7134 3273 43 0 3 chr1 213031442 213031818 -69161846 - L1PA5 LINE L1 0 6154 5780 1293 212 105 126 chr1 213031818 213031925 -69161739 - L1MC5 LINE L1 -827 7134 7026 189 0 0 0 chr1 213031925 213031946 -69161718 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1293 212 105 126 chr1 213031946 213031968 -69161696 - L1MC5 LINE L1 -935 7026 7005 1453 179 4 29 chr1 213031968 213032242 -69161422 - AluJo SINE Alu -45 267 1 1293 212 105 126 chr1 213032242 213032367 -69161297 - L1MC5 LINE L1 -956 7005 6879 180 111 0 0 chr1 213032367 213032394 -69161270 + (AGTAG)n Simple_repeat Simple_repeat 5 31 0 261 83 0 0 chr1 213032401 213032437 -69161227 + (CAGAA)n Simple_repeat Simple_repeat 3 38 0 1293 212 105 126 chr1 213032437 213032629 -69161035 - L1MC5 LINE L1 -1088 6873 6696 250 155 134 41 chr1 213032652 213032749 -69160915 + L1M4 LINE L1 5243 5348 -798 304 285 146 7 chr1 213033295 213033439 -69160225 - L1M4 LINE L1 -1224 4922 4759 1295 274 90 22 chr1 213033461 213034052 -69159612 + L1MEd LINE L1 581 1211 -4908 1313 138 0 0 chr1 213034071 213034255 -69159409 + MER75 DNA T2_type 2 185 -329 2698 177 44 96 chr1 213034255 213035005 -69158659 + MER50 LTR ERV1 1 711 -23 2409 86 0 51 chr1 213035005 213035356 -69158308 + MER75 DNA T2_type 181 513 -1 423 276 60 34 chr1 213035413 213035678 -69157986 + L1MEd LINE L1 1331 1602 -4708 354 80 0 0 chr1 213036034 213036084 -69157580 + (CA)n Simple_repeat Simple_repeat 2 51 0 244 214 14 57 chr1 213036151 213036221 -69157443 + MER103 DNA DNA 91 157 -9 630 63 13 0 chr1 213036952 213037031 -69156633 + MADE1 DNA Mariner 1 80 0 240 336 27 27 chr1 213038848 213038958 -69154706 + MIR SINE MIR 4 113 -149 2117 148 0 0 chr1 213039304 213039614 -69154050 + AluJo SINE Alu 2 311 -1 233 274 158 0 chr1 213039688 213039783 -69153881 + MER5A DNA MER1_type 2 111 -78 260 288 121 38 chr1 213039916 213040048 -69153616 - MER5A DNA MER1_type -2 187 45 186 281 0 31 chr1 213039991 213040055 -69153609 + MER5B DNA MER1_type 91 152 -26 * 6450 93 9 19 chr1 213041981 213042244 -69151420 + L1PA8A LINE L1 5207 5471 -660 2376 81 0 23 chr1 213042244 213042554 -69151110 + AluY SINE Alu 1 303 -8 6450 93 9 19 chr1 213042554 213043222 -69150442 + L1PA8A LINE L1 5471 6129 -2 181 301 234 48 chr1 213043320 213043529 -69150135 - L2 LINE L2 -190 3082 2835 268 345 185 19 chr1 213043676 213044108 -69149556 - L2 LINE L2 -668 2646 2143 563 170 0 57 chr1 213045334 213045475 -69148189 - LTR37A LTR ERV1 0 426 294 1446 180 27 8 chr1 213045476 213045737 -69147927 - AluJo SINE Alu -46 266 1 202 317 0 0 chr1 213045803 213045844 -69147820 + L2 LINE L2 3210 3250 -22 450 294 53 27 chr1 213046257 213046457 -69147207 - MIR3 SINE MIR 0 208 6 203 56 56 0 chr1 213047708 213047744 -69145920 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 833 165 0 0 chr1 213047744 213047877 -69145787 - FRAM SINE Alu -30 146 14 1644 270 100 17 chr1 213047912 213048393 -69145271 - MLT1G1 LTR MaLR 0 595 75 385 330 148 49 chr1 213048451 213048775 -69144889 + L2 LINE L2 2917 3272 0 2992 122 29 7 chr1 213049756 213050175 -69143489 - MSTA LTR MaLR 0 428 1 1221 236 131 66 chr1 213050512 213050552 -69143112 - MLT2B1 LTR ERVL 0 520 484 189 0 0 0 chr1 213050552 213050573 -69143091 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 207 0 0 0 chr1 213050572 213050595 -69143069 + (GA)n Simple_repeat Simple_repeat 2 24 0 1221 236 131 66 chr1 213050573 213051042 -69142622 - MLT2B1 LTR ERVL -36 484 1 293 264 24 128 chr1 213051102 213051219 -69142445 - L1ME LINE L1 -382 5739 5611 2251 207 25 47 chr1 213051219 213051735 -69141929 + MLT1D LTR MaLR 1 505 0 293 264 24 128 chr1 213051735 213051905 -69141759 - L1ME LINE L1 -510 5611 5482 313 267 0 0 chr1 213052038 213052124 -69141540 - L1ME LINE L1 -846 5300 5215 265 265 83 61 chr1 213052201 213052333 -69141331 + MIR3 SINE MIR 10 144 -64 212 376 170 19 chr1 213052349 213052660 -69141004 - L2 LINE L2 0 3272 2915 411 307 111 18 chr1 213052706 213052931 -69140733 - L2 LINE L2 -472 2842 2597 409 243 108 0 chr1 213054401 213054512 -69139152 - MIR SINE MIR -56 206 84 1628 217 56 22 chr1 213054585 213054995 -69138669 - MER31A LTR ERV1 0 485 62 336 81 16 81 chr1 213055034 213055096 -69138568 + MER31B LTR ERV1 1 58 -408 2102 107 38 0 chr1 213056483 213056791 -69136873 - AluSx SINE Alu 0 312 1 264 238 113 0 chr1 213056978 213057058 -69136606 + MER117 DNA MER1_type 2 90 -107 357 261 174 14 chr1 213057306 213057444 -69136220 + MLT1I LTR MaLR 278 450 0 273 197 106 56 chr1 213057685 213057827 -69135837 + MER20B DNA MER1_type 624 772 -11 1651 169 0 0 chr1 213058390 213058651 -69135013 - AluJo SINE Alu -15 297 37 555 208 9 0 chr1 213059221 213059327 -69134337 + AluJb SINE Alu 206 312 0 225 0 0 0 chr1 213059397 213059422 -69134242 + (TG)n Simple_repeat Simple_repeat 2 26 0 278 355 32 21 chr1 213060007 213060208 -69133456 - MIR SINE MIR -39 223 21 2350 94 0 3 chr1 213060591 213060900 -69132764 - AluSg SINE Alu -2 308 1 720 111 0 0 chr1 213061429 213061537 -69132127 + (TA)n Simple_repeat Simple_repeat 2 109 0 2639 43 0 0 chr1 213061537 213061839 -69131825 - AluY SINE Alu -9 302 1 211 359 0 33 chr1 213062327 213062419 -69131245 - MIR SINE MIR -62 146 58 549 245 31 18 chr1 213063152 213063315 -69130349 + MIR SINE MIR 61 225 -37 276 184 155 10 chr1 213063419 213063522 -69130142 + L1ME3A LINE L1 4630 4747 -1399 1922 160 25 0 chr1 213063527 213063985 -69129679 - MLT2B1 LTR ERVL 0 520 1 588 256 100 37 chr1 213064046 213064576 -69129088 + L1ME3A LINE L1 4927 5489 -689 575 286 52 50 chr1 213064611 213064974 -69128690 + L1ME3A LINE L1 5600 5963 -207 201 200 0 89 chr1 213065369 213065414 -69128250 + L2 LINE L2 3244 3284 -29 215 353 224 10 chr1 213067760 213067961 -69125703 + L2 LINE L2 3004 3247 -25 180 0 0 0 chr1 213067963 213067983 -69125681 + (CAA)n Simple_repeat Simple_repeat 2 21 0 342 186 103 21 chr1 213068021 213068118 -69125546 + MIR SINE MIR 123 227 -35 2022 218 104 40 chr1 213068604 213069123 -69124541 + MLT2B3 LTR ERVL 3 554 0 2930 94 98 104 chr1 213069985 213070514 -69123150 - MER1A DNA MER1_type -1 526 1 790 189 24 73 chr1 213070660 213070866 -69122798 - MER20B DNA MER1_type -20 199 4 386 340 31 31 chr1 213071569 213071728 -69121936 + L2 LINE L2 3107 3265 -7 194 283 0 33 chr1 213072356 213072416 -69121248 - MIR SINE MIR -121 141 84 349 262 56 3 chr1 213073420 213073538 -69120126 + MIR SINE MIR 27 154 -63 2008 142 3 10 chr1 213073692 213074002 -69119662 + AluJb SINE Alu 1 308 -4 2214 107 7 7 chr1 213074151 213074450 -69119214 - AluSx SINE Alu -13 299 1 198 147 29 0 chr1 213074712 213074746 -69118918 - L3b LINE CR1 -257 1326 1292 287 260 187 0 chr1 213075532 213075655 -69118009 - MIR SINE MIR -72 190 45 43980 45 6 3 chr1 213075960 213078483 -69115181 - L1PA4 LINE L1 -2 6153 3639 2435 80 0 0 chr1 213078483 213078784 -69114880 - AluY SINE Alu -9 302 2 43980 45 6 3 chr1 213078784 213082392 -69111272 - L1PA4 LINE L1 -2516 3639 3 2300 96 0 16 chr1 213083257 213083560 -69110104 - AluSg SINE Alu -12 298 1 2237 73 76 0 chr1 213083644 213083932 -69109732 - AluY SINE Alu 0 311 2 24 53 0 0 chr1 213083966 213084004 -69109660 + AT_rich Low_complexity Low_complexity 1 38 0 410 332 100 0 chr1 213084480 213084670 -69108994 - L2 LINE L2 -1 3312 3104 1632 121 77 29 chr1 213085005 213085277 -69108387 - AluSx SINE Alu -27 285 1 1806 162 21 63 chr1 213085349 213085732 -69107932 + MLT1A2 LTR MaLR 2 368 -6 958 246 40 4 chr1 213085760 213086012 -69107652 + MIR SINE MIR 2 262 0 452 280 42 7 chr1 213086013 213086156 -69107508 - MIR SINE MIR -114 148 1 558 218 109 12 chr1 213086893 213087058 -69106606 - LTR50 LTR ERVL 0 795 615 * 749 172 125 33 chr1 213087056 213087323 -69106341 - LTR50 LTR ERVL -361 434 97 1714 161 20 33 chr1 213087473 213087777 -69105887 + AluJo SINE Alu 1 300 -12 519 334 91 34 chr1 213087804 213088435 -69105229 - L2 LINE L2 -222 3050 2366 21 0 0 0 chr1 213088855 213088876 -69104788 + AT_rich Low_complexity Low_complexity 1 21 0 218 258 32 32 chr1 213089451 213089513 -69104151 + L2 LINE L2 3117 3178 -94 2447 94 0 0 chr1 213090892 213091200 -69102464 - AluY SINE Alu -3 308 1 2049 123 0 0 chr1 213091220 213091504 -69102160 - AluSx SINE Alu -10 302 19 2959 84 0 16 chr1 213092286 213092656 -69101008 - THE1B LTR MaLR 0 364 1 220 281 141 31 chr1 213094622 213094750 -69098914 - MIR SINE MIR -118 144 3 650 297 24 14 chr1 213094767 213094979 -69098685 + MIR SINE MIR 48 261 -1 791 221 64 52 chr1 213094987 213095405 -69098259 - LTR33 LTR ERVL -2 519 26 2287 192 35 47 chr1 213096025 213096536 -69097128 - MLT1D LTR MaLR 0 505 1 549 285 13 0 chr1 213096599 213096750 -69096914 - LTR33 LTR ERVL -2 519 367 965 227 41 8 chr1 213096791 213097033 -69096631 - LTR33 LTR ERVL -257 264 15 283 202 24 0 chr1 213098173 213098257 -69095407 + CT-rich Low_complexity Low_complexity 1 86 0 274 287 9 43 chr1 213098477 213098592 -69095072 + Charlie7 DNA MER1_type 2502 2612 0 578 250 103 42 chr1 213098658 213098913 -69094751 - MIR SINE MIR 0 262 2 395 248 60 34 chr1 213099122 213099239 -69094425 + MLT1G1 LTR MaLR 1 120 -475 2902 72 28 0 chr1 213099239 213099602 -69094062 + L1PA8 LINE L1 5794 6166 -6 1886 118 31 3 chr1 213099609 213099931 -69093733 + L1 LINE L1 4255 4585 -1561 558 217 0 0 chr1 213099933 213100039 -69093625 + L1MA9 LINE L1 6168 6273 -39 252 0 0 0 chr1 213100041 213100069 -69093595 + (CA)n Simple_repeat Simple_repeat 2 29 0 989 255 174 10 chr1 213100090 213100505 -69093159 + MLT1G1 LTR MaLR 113 595 0 207 309 10 62 chr1 213101004 213101101 -69092563 + L2 LINE L2 2973 3064 -208 370 259 58 69 chr1 213101137 213101311 -69092353 + L2 LINE L2 3062 3233 -39 282 388 0 36 chr1 213101514 213101679 -69091985 - L3 LINE CR1 -130 1447 1289 353 80 0 4 chr1 213102939 213102999 -69090665 - AluSp/q SINE Alu 0 303 251 495 345 148 21 chr1 213103002 213103811 -69089853 + L2 LINE L2 2040 2951 -363 2319 104 0 0 chr1 213103958 213104257 -69089407 - AluSx SINE Alu -13 299 1 302 113 0 19 chr1 213104853 213104906 -69088758 + (TG)n Simple_repeat Simple_repeat 2 53 0 343 314 0 7 chr1 213105519 213105659 -69088005 - LTR67 LTR ERVL -8 549 411 312 287 154 7 chr1 213106051 213106194 -69087470 - ERVL LTR ERVL -3819 1945 1782 316 290 76 92 chr1 213106357 213106674 -69086990 - ERVL LTR ERVL -4107 1547 1236 2063 157 0 0 chr1 213106834 213107139 -69086525 - AluJb SINE Alu -7 305 1 289 250 79 99 chr1 213107180 213107332 -69086332 - MLT1J2 LTR MaLR -299 151 3 2281 112 7 0 chr1 213107723 213108028 -69085636 + AluSg1 SINE Alu 1 307 -2 440 314 54 64 chr1 213108175 213108471 -69085193 - MLT1K LTR MaLR -230 358 66 392 287 24 36 chr1 213108688 213108855 -69084809 + L1MEc LINE L1 73 237 -6159 407 375 35 61 chr1 213108856 213109251 -69084413 + L1MEc LINE L1 310 694 -5702 606 270 92 36 chr1 213109385 213109996 -69083668 + L1MEc LINE L1 666 1276 -4837 671 254 50 14 chr1 213110009 213110229 -69083435 + L1ME1 LINE L1 5933 6160 -6 14085 109 53 75 chr1 213110431 213112611 -69081053 + Tigger1 DNA MER2_type 26 2252 -166 995 189 6 6 chr1 213112611 213112775 -69080889 + FRAM SINE Alu 3 166 0 14085 109 53 75 chr1 213112775 213112923 -69080741 + Tigger1 DNA MER2_type 2252 2301 -117 2289 107 0 0 chr1 213112923 213113222 -69080442 - AluSx SINE Alu -13 299 1 14085 109 53 75 chr1 213113222 213113337 -69080327 + Tigger1 DNA MER2_type 2301 2417 -1 21 0 0 0 chr1 213113647 213113668 -69079996 + AT_rich Low_complexity Low_complexity 1 21 0 366 345 178 0 chr1 213114170 213114367 -69079297 + MIR SINE MIR 21 252 -10 189 178 0 0 chr1 213115014 213115059 -69078605 + GA-rich Low_complexity Low_complexity 1 45 0 189 269 58 0 chr1 213115195 213115247 -69078417 - L2 LINE L2 -14 3299 3245 2245 123 0 0 chr1 213115303 213115613 -69078051 - AluSx SINE Alu -2 310 1 316 332 171 24 chr1 213115629 213115969 -69077695 - HAL1 LINE L1 0 2507 2118 281 239 0 0 chr1 213116176 213116243 -69077421 - HAL1 LINE L1 -359 2148 2082 959 128 0 0 chr1 213116477 213116610 -69077054 - FLAM_C SINE Alu 0 133 1 462 289 203 7 chr1 213116669 213116974 -69076690 - HAL1 LINE L1 -599 1908 1544 216 0 0 0 chr1 213116979 213117003 -69076661 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 889 187 12 18 chr1 213117006 213117177 -69076487 - AluJb SINE Alu -31 281 112 675 274 192 34 chr1 213117182 213117614 -69076050 - HAL1 LINE L1 -970 1537 1014 1007 238 107 59 chr1 213117614 213118055 -69075609 + LTR16B LTR ERVL 1 462 -2 675 274 192 34 chr1 213118055 213118122 -69075542 - HAL1 LINE L1 -1493 1014 959 190 387 11 11 chr1 213118438 213118531 -69075133 + L2 LINE L2 3099 3191 -81 270 278 143 16 chr1 213118627 213118753 -69074911 - MIR SINE MIR -119 143 2 1448 18 0 12 chr1 213119059 213119224 -69074440 + L1PA2 LINE L1 5993 6155 0 2477 51 7 0 chr1 213120203 213120496 -69073168 + AluY SINE Alu 1 295 -16 493 291 149 88 chr1 213120574 213120949 -69072715 - L2 LINE L2 -9 3263 2866 821 276 27 0 chr1 213121128 213121425 -69072239 + L1MC4a LINE L1 5647 5951 -1857 6640 122 17 4 chr1 213121513 213123290 -69070374 + L1MA3 LINE L1 4504 6305 0 5772 157 19 11 chr1 213123298 213123871 -69069793 + L1MC1 LINE L1 5264 5850 -483 2409 128 37 28 chr1 213123871 213124299 -69069365 + MSTB1 LTR MaLR 1 432 0 5772 157 19 11 chr1 213124299 213124786 -69068878 + L1MC1 LINE L1 5850 6332 -1 315 249 161 49 chr1 213124797 213125002 -69068662 + L1MC4a LINE L1 5943 6170 -1638 818 285 14 9 chr1 213125012 213125233 -69068431 + MIR SINE MIR 28 249 -13 242 184 66 0 chr1 213125320 213125396 -69068268 + L1ME4a LINE L1 6018 6098 -23 4984 160 26 7 chr1 213125420 213126617 -69067047 - L1MB1 LINE L1 0 6168 4961 28 0 0 0 chr1 213126617 213126645 -69067019 + AT_rich Low_complexity Low_complexity 1 28 0 1853 153 3 7 chr1 213127778 213128066 -69065598 + AluJo SINE Alu 1 287 -25 1252 247 68 40 chr1 213128702 213129036 -69064628 - L2 LINE L2 -4 3309 2957 2212 80 48 0 chr1 213129036 213129325 -69064339 + AluSg SINE Alu 1 303 -7 1252 247 68 40 chr1 213129325 213129601 -69064063 - L2 LINE L2 -356 2957 2690 2494 94 43 14 chr1 213129601 213129972 -69063692 + L1PA16 LINE L1 5776 6157 -9 23 0 0 0 chr1 213129972 213129995 -69063669 + AT_rich Low_complexity Low_complexity 1 23 0 249 278 200 22 chr1 213130068 213130158 -69063506 - MIR SINE MIR -111 151 46 331 256 196 30 chr1 213130826 213131025 -69062639 + MIR SINE MIR 20 251 -11 363 244 0 0 chr1 213132756 213132842 -69060822 + L3b LINE CR1 1116 1201 -382 410 303 8 0 chr1 213132842 213132964 -69060700 + MIR3 SINE MIR 67 189 -19 439 204 46 28 chr1 213133820 213133928 -69059736 + MER5B DNA MER1_type 6 115 -63 2035 125 8 115 chr1 213134078 213134477 -69059187 + LTR18A LTR ERVL 2 357 0 2288 199 28 4 chr1 213134503 213134971 -69058693 + HERVL18 LTR ERVL 9 487 -5560 2251 172 32 16 chr1 213134969 213135405 -69058259 + HERVL18 LTR ERVL 1172 1614 -4433 * 1179 117 86 2 chr1 213135435 213135689 -69057975 + HERVL18 LTR ERVL 2119 2451 -3596 1958 210 22 3 chr1 213135690 213136047 -69057617 + HERVL18 LTR ERVL 2721 3084 -2963 * 3388 151 2 24 chr1 213136035 213136612 -69057052 + HERVL18 LTR ERVL 2941 3504 -2543 2172 97 53 9 chr1 213136615 213136956 -69056708 + MLT2A1 LTR ERVL 89 444 0 473 210 10 0 chr1 213137037 213137137 -69056527 + HERVL18 LTR ERVL 5946 6046 -1 2156 145 22 49 chr1 213137258 213137623 -69056041 + LTR18A LTR ERVL 1 355 -2 216 250 0 0 chr1 213137827 213137875 -69055789 + L2 LINE L2 3219 3266 -6 2154 91 0 4 chr1 213139644 213139920 -69053744 + AluY SINE Alu 35 309 -2 555 239 107 6 chr1 213142640 213142704 -69050960 + MIR SINE MIR 88 144 -118 1950 100 41 17 chr1 213142704 213143016 -69050648 + AluSx SINE Alu 1 319 0 555 239 107 6 chr1 213143016 213143108 -69050556 + MIR SINE MIR 144 262 0 558 220 203 0 chr1 213143186 213143363 -69050301 - MIR SINE MIR 0 262 50 508 263 107 37 chr1 213144698 213144941 -69048723 - MLT1L LTR MaLR -315 300 41 333 298 91 33 chr1 213145191 213145312 -69048352 + L2 LINE L2 3139 3266 -6 1813 125 75 0 chr1 213147418 213147699 -69045965 - AluSx SINE Alu -10 302 1 1015 241 37 0 chr1 213147887 213148103 -69045561 - MER58A DNA MER1_type 0 224 1 254 326 102 34 chr1 213148723 213148870 -69044794 + L1MEd LINE L1 766 922 -5450 24 32 0 0 chr1 213148891 213148922 -69044742 + AT_rich Low_complexity Low_complexity 1 31 0 260 280 112 0 chr1 213148961 213149068 -69044596 + L1MEd LINE L1 1309 1427 -4957 411 317 16 62 chr1 213149071 213149314 -69044350 + L1MEd LINE L1 1024 1255 -5117 691 302 102 27 chr1 213149885 213150634 -69043030 - L1MEc LINE L1 -4580 1816 1012 21 0 0 0 chr1 213150634 213150655 -69043009 + AT_rich Low_complexity Low_complexity 1 21 0 1469 101 13 0 chr1 213150655 213150883 -69042781 - L1MA1 LINE L1 -5 7716 7486 15243 186 40 50 chr1 213150988 213156065 -69037599 - L1MA1 LINE L1 -225 7496 2370 2157 127 0 19 chr1 213156065 213156380 -69037284 - AluSx SINE Alu -2 310 2 15243 186 40 50 chr1 213156380 213156453 -69037211 - L1MA1 LINE L1 -5351 2370 2298 497 204 0 0 chr1 213156453 213156551 -69037113 - AluSp/q SINE Alu 0 313 216 15243 186 40 50 chr1 213156551 213156651 -69037013 - L1MA1 LINE L1 -5423 2298 2199 2806 10 0 0 chr1 213156651 213156956 -69036708 + AluYa5 SINE Alu 5 309 -2 15243 186 40 50 chr1 213156956 213159170 -69034494 - L1MA1 LINE L1 -5522 2199 15 5200 166 12 21 chr1 213159247 213160426 -69033238 - L1MA6 LINE L1 -12 6288 5117 712 93 47 0 chr1 213162700 213162807 -69030857 + HY1 scRNA scRNA 1 112 0 300 53 0 0 chr1 213162808 213162846 -69030818 + (GA)n Simple_repeat Simple_repeat 2 39 0 213 268 18 0 chr1 213163860 213163916 -69029748 + GA-rich Low_complexity Low_complexity 3 59 0 353 311 38 9 chr1 213164786 213164892 -69028772 + MIR3 SINE MIR 92 200 -8 249 57 0 0 chr1 213164969 213165004 -69028660 + (CAT)n Simple_repeat Simple_repeat 3 37 0 225 266 62 0 chr1 213165050 213165114 -69028550 - MIR SINE MIR -74 188 121 657 251 60 22 chr1 213166179 213166446 -69027218 - HAL1 LINE L1 -767 1740 1464 700 270 115 11 chr1 213166598 213166868 -69026796 + L2 LINE L2 3013 3310 -3 747 89 0 0 chr1 213166872 213166973 -69026691 + L1PA8A LINE L1 6004 6104 -27 2157 81 0 0 chr1 213167348 213167654 -69026010 + AluY SINE Alu 19 311 0 33 66 0 0 chr1 213167808 213167869 -69025795 + AT_rich Low_complexity Low_complexity 1 61 0 364 298 131 20 chr1 213168571 213168816 -69024848 - L1ME4a LINE L1 -218 5903 5632 861 293 102 43 chr1 213169837 213170438 -69023226 - L1ME4a LINE L1 -1647 4499 3864 32 75 0 0 chr1 213170526 213170593 -69023071 + AT_rich Low_complexity Low_complexity 1 67 0 358 338 29 0 chr1 213170646 213170785 -69022879 - MIR SINE MIR -57 205 63 1996 206 90 7 chr1 213171327 213171792 -69021872 + MLT1D LTR MaLR 1 504 -1 2867 160 45 2 chr1 213171793 213172348 -69021316 - L1MC3 LINE L1 -27 7758 7180 1791 181 0 16 chr1 213172584 213172899 -69020765 - AluJb SINE Alu -2 310 1 332 388 0 0 chr1 213173086 213173207 -69020457 + L2 LINE L2 3149 3269 -3 454 193 0 0 chr1 213173226 213173309 -69020355 - MER20 DNA MER1_type -136 83 1 843 273 86 18 chr1 213173314 213173881 -69019783 + L1ME1 LINE L1 4212 4817 -1329 590 240 14 41 chr1 213174009 213174155 -69019509 + L2 LINE L2 3171 3312 -1 924 117 0 0 chr1 213174241 213174386 -69019278 + (TC)n Simple_repeat Simple_repeat 2 146 0 426 20 0 0 chr1 213174385 213174436 -69019228 + (TG)n Simple_repeat Simple_repeat 2 52 0 * 246 344 11 21 chr1 213175659 213175752 -69017912 - MIR SINE MIR -57 151 60 296 346 118 24 chr1 213175761 213175972 -69017692 + MIR SINE MIR 9 239 -23 199 299 0 94 chr1 213176013 213176140 -69017524 + L2 LINE L2 3183 3297 -16 1965 153 0 13 chr1 213176141 213176448 -69017216 - AluJb SINE Alu -9 303 1 1105 150 46 0 chr1 213176666 213176839 -69016825 + AluSg/x SINE Alu 122 302 -10 2054 196 53 34 chr1 213177815 213178309 -69015355 + MLT1D LTR MaLR 3 505 0 3305 169 16 2 chr1 213178469 213179089 -69014575 + L1MB5 LINE L1 5477 6105 -69 264 333 31 21 chr1 213179331 213179427 -69014237 - MIR SINE MIR -147 115 19 1496 235 15 66 chr1 213179480 213180012 -69013652 + MLT1D LTR MaLR 1 505 0 424 202 32 0 chr1 213180012 213180106 -69013558 - MIR SINE MIR -29 233 137 1849 219 108 52 chr1 213180107 213180408 -69013256 + L1ME1 LINE L1 5310 5593 -573 2016 163 3 3 chr1 213180408 213180714 -69012950 + 7SLRNA srpRNA srpRNA 14 319 -1 1849 219 108 52 chr1 213180714 213180951 -69012713 + L1ME1 LINE L1 5593 5815 -351 2082 124 10 10 chr1 213180951 213181257 -69012407 + AluJo SINE Alu 1 306 -6 1849 219 108 52 chr1 213181257 213181533 -69012131 + L1ME1 LINE L1 5815 6162 -4 397 190 51 0 chr1 213181552 213181631 -69012033 - MIR SINE MIR -168 94 12 1047 273 52 69 chr1 213181700 213181742 -69011922 + MLT1H1 LTR MaLR 24 65 -490 2497 63 0 3 chr1 213181742 213182044 -69011620 + AluY SINE Alu 1 301 -10 1047 273 52 69 chr1 213182044 213182096 -69011568 + MLT1H1 LTR MaLR 65 116 -439 22603 37 0 0 chr1 213182096 213185628 -69008036 - L1PA4 LINE L1 0 6155 2618 1047 273 52 69 chr1 213185628 213186071 -69007593 + MLT1H1 LTR MaLR 116 553 -2 32 43 0 0 chr1 213237298 213237344 -68956320 + AT_rich Low_complexity Low_complexity 1 46 0 248 326 59 86 chr1 213237607 213237828 -68955836 - L2 LINE L2 -4 3268 3054 519 228 18 0 chr1 213237830 213237944 -68955720 - MER94 DNA DNA -6 128 13 305 354 173 15 chr1 213238258 213238795 -68954869 - L2 LINE L2 -458 2856 2235 359 217 113 9 chr1 213238989 213239095 -68954569 + L2 LINE L2 3197 3313 0 2365 88 0 0 chr1 213239448 213239744 -68953920 + AluY SINE Alu 1 296 -15 625 337 21 12 chr1 213240316 213240559 -68953105 - MIR SINE MIR 0 262 18 1670 151 36 23 chr1 213240682 213241053 -68952611 - Tigger3(Golem) DNA MER2_type -9 3020 1 569 208 128 83 chr1 213241053 213241500 -68952164 - L1MC5 LINE L1 -236 7725 7259 1843 164 27 0 chr1 213241500 213241798 -68951866 - AluJb SINE Alu -6 306 1 1347 228 100 56 chr1 213241922 213242584 -68951080 - L1MC5 LINE L1 -741 7220 6614 1313 220 33 125 chr1 213242591 213242824 -68950840 - L1MC5 LINE L1 -686 5468 5835 243 0 0 0 chr1 213242824 213242851 -68950813 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1313 220 33 125 chr1 213242851 213243348 -68950316 - L1MC5 LINE L1 -318 5836 5295 1963 117 3 24 chr1 213243349 213243670 -68949994 - AluSq SINE Alu 0 315 1 1381 164 14 20 chr1 213243895 213244242 -68949422 - Charlie5 DNA MER1_type -33 2579 2235 741 165 0 0 chr1 213244240 213244367 -68949297 - Charlie5 DNA MER1_type -2485 127 1 * 487 308 84 56 chr1 213244379 213244531 -68949133 - L1MC5 LINE L1 -1089 5057 4911 1499 151 33 16 chr1 213244531 213244776 -68948888 + AluJo SINE Alu 50 298 -14 487 308 84 56 chr1 213244776 213244944 -68948720 - L1MC5 LINE L1 -1235 4911 4728 332 318 61 40 chr1 213244937 213245085 -68948579 + L1ME3A LINE L1 5422 5572 -598 * 690 224 91 8 chr1 213245281 213245544 -68948120 + L1ME3A LINE L1 5683 5967 -203 668 267 118 18 chr1 213246147 213246368 -68947296 - MIR SINE MIR -3 259 17 814 219 95 82 chr1 213246433 213246821 -68946843 - MSTD LTR MaLR -3 393 1 1898 160 3 0 chr1 213247338 213247638 -68946026 - AluJb SINE Alu -11 301 1 1005 172 6 0 chr1 213248938 213249101 -68944563 - FRAM SINE Alu -12 164 1 1537 185 32 55 chr1 213249106 213249414 -68944250 - AluJo SINE Alu -7 305 5 455 0 18 0 chr1 213252753 213252808 -68940856 + (TA)n Simple_repeat Simple_repeat 2 57 0 1901 112 45 0 chr1 213252808 213253095 -68940569 - AluSq SINE Alu -13 300 1 2605 48 0 3 chr1 213253555 213253865 -68939799 - AluY SINE Alu -2 309 1 1405 154 0 0 chr1 213254755 213254969 -68938695 + AluJo SINE Alu 87 300 -12 188 308 31 0 chr1 213256217 213256282 -68937382 + L2 LINE L2 3202 3268 -4 1487 197 35 0 chr1 213256287 213256571 -68937093 - AluJo SINE Alu -18 294 1 274 353 10 20 chr1 213257349 213257451 -68936213 + MIR SINE MIR 21 121 -87 550 305 45 6 chr1 213257487 213257664 -68936000 - MER5A DNA MER1_type -3 186 3 400 242 68 0 chr1 213257670 213257802 -68935862 - MER112 DNA MER1_type -1 259 119 288 124 0 20 chr1 213257810 213257867 -68935797 - MLT1-int LTR MaLR -1308 63 14 207 0 0 0 chr1 213258539 213258562 -68935102 + (TTTAA)n Simple_repeat Simple_repeat 2 24 0 806 252 104 46 chr1 213258685 213259078 -68934586 + MARNA DNA Mariner 144 559 -27 1754 144 34 17 chr1 213260364 213260656 -68933008 - AluJb SINE Alu -14 298 2 494 290 67 30 chr1 213261234 213261460 -68932204 + MIR SINE MIR 20 254 -8 860 239 208 16 chr1 213261599 213262181 -68931483 - L2 LINE L2 0 3313 2633 1450 177 111 4 chr1 213263270 213263541 -68930123 - AluJo SINE Alu -12 300 1 21 0 0 0 chr1 213263677 213263698 -68929966 + AT_rich Low_complexity Low_complexity 1 21 0 965 274 20 4 chr1 213264489 213264741 -68928923 - MIR SINE MIR 0 262 7 371 361 100 13 chr1 213265084 213265314 -68928350 + MIR SINE MIR 13 262 0 229 381 123 25 chr1 213265312 213265548 -68928116 - L2 LINE L2 -21 3251 2993 * 275 320 20 20 chr1 213265585 213265685 -68927979 - L2 LINE L2 -530 2784 2685 401 309 8 24 chr1 213265744 213265870 -68927794 - L3 LINE CR1 -45 1532 1409 602 136 8 0 chr1 213265912 213266030 -68927634 + (TCCA)n Simple_repeat Simple_repeat 2 120 0 276 297 85 34 chr1 213266030 213266148 -68927516 - L2 LINE L2 0 3272 3149 254 308 84 48 chr1 213266161 213266388 -68927276 - L3 LINE CR1 -167 1410 1176 571 247 24 65 chr1 213266397 213266567 -68927097 - MIR3 SINE MIR -3 205 43 287 325 58 17 chr1 213266595 213266715 -68926949 - L3 LINE CR1 -410 1167 1043 581 256 53 34 chr1 213266753 213266960 -68926704 - MIR SINE MIR -31 231 21 415 326 37 21 chr1 213267019 213267206 -68926458 - L3 LINE CR1 -610 967 778 1873 160 20 0 chr1 213267411 213267704 -68925960 - AluJo SINE Alu -12 300 2 209 333 31 57 chr1 213267763 213267922 -68925742 + L2 LINE L2 2916 3070 -202 444 271 44 44 chr1 213268137 213268318 -68925346 - L3 LINE CR1 -848 729 549 584 321 149 26 chr1 213268412 213269011 -68924653 + L2 LINE L2 2591 3267 -5 210 270 103 56 chr1 213269023 213269149 -68924515 - L2 LINE L2 0 3272 3141 302 332 118 11 chr1 213269197 213269384 -68924280 - L3 LINE CR1 -1061 516 310 22 0 0 0 chr1 213269459 213269481 -68924183 + AT_rich Low_complexity Low_complexity 1 22 0 381 270 17 15 chr1 213269659 213269800 -68923864 + MIR3 SINE MIR 48 187 -21 536 267 92 0 chr1 213270126 213270257 -68923407 + MIR SINE MIR 40 182 -80 211 315 0 0 chr1 213271213 213271267 -68922397 - L2 LINE L2 0 3272 3219 574 108 20 101 chr1 213271892 213271970 -68921694 - MER53 DNA DNA -53 136 74 2429 81 0 13 chr1 213271970 213272277 -68921387 + AluY SINE Alu 1 303 -8 574 108 20 101 chr1 213272277 213272346 -68921318 - MER53 DNA DNA -115 74 1 2561 92 22 0 chr1 213272919 213273276 -68920388 - L1P LINE L1 -1483 4663 4299 * 5130 77 0 2 chr1 213273269 213273950 -68919714 + L1M LINE L1 4648 5323 -832 7376 53 10 0 chr1 213273950 213274822 -68918842 + L1PA7 LINE L1 5273 6154 0 5130 77 0 2 chr1 213274822 213274837 -68918827 + L1M LINE L1 5323 5337 -818 689 199 20 0 chr1 213275706 213275857 -68917807 - Charlie5 DNA MER1_type -31 2581 2428 336 247 0 24 chr1 213275831 213275916 -68917748 - Charlie5 DNA MER1_type -2522 90 8 * 190 306 36 132 chr1 213276099 213276318 -68917346 + L2 LINE L2 3030 3227 -45 204 261 120 11 chr1 213276428 213276520 -68917144 - MIR SINE MIR -50 212 111 1074 321 203 20 chr1 213276532 213277477 -68916187 - L2 LINE L2 -2 3311 2540 2038 146 3 0 chr1 213277477 213277785 -68915879 - AluSx SINE Alu -2 310 2 1074 321 203 20 chr1 213277785 213278510 -68915154 - L2 LINE L2 -773 2540 1336 400 286 104 63 chr1 213278857 213279144 -68914520 - L2 LINE L2 -9 3304 3006 3441 120 35 6 chr1 213279770 213280260 -68913404 - MER1A DNA MER1_type 0 529 26 184 353 15 29 chr1 213280811 213280879 -68912785 + L2 LINE L2 3125 3191 -81 2276 116 0 0 chr1 213281072 213281382 -68912282 + AluSx SINE Alu 1 310 -2 562 292 0 0 chr1 213281422 213281552 -68912112 + MIR SINE MIR 32 161 -101 885 150 0 15 chr1 213281812 213281945 -68911719 + FLAM_C SINE Alu 1 131 -2 2129 113 6 35 chr1 213282376 213282695 -68910969 - AluSx SINE Alu -2 310 1 243 250 164 19 chr1 213283695 213283799 -68909865 - MIR SINE MIR -16 246 128 503 290 91 28 chr1 213284138 213284369 -68909295 + MIR SINE MIR 5 248 -14 315 378 99 0 chr1 213284426 213284577 -68909087 + MIR SINE MIR 26 191 -71 22 35 0 0 chr1 213284925 213284954 -68908710 + AT_rich Low_complexity Low_complexity 1 29 0 2628 102 8 6 chr1 213286392 213286746 -68906918 + THE1A LTR MaLR 1 355 0 281 176 80 88 chr1 213286760 213286885 -68906779 + MIR SINE MIR 68 191 -71 279 0 0 0 chr1 213287487 213287518 -68906146 + (TC)n Simple_repeat Simple_repeat 1 31 0 1316 202 76 67 chr1 213288553 213289147 -68904517 + L1MC5 LINE L1 7249 7925 -36 2097 148 0 0 chr1 213290229 213290527 -68903137 - AluSx SINE Alu -14 298 1 24 32 0 0 chr1 213291134 213291165 -68902499 + AT_rich Low_complexity Low_complexity 1 31 0 4971 32 2 0 chr1 213291193 213291747 -68901917 - L1PA4 LINE L1 0 6155 5601 207 0 0 0 chr1 213293014 213293037 -68900627 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2073 126 0 0 chr1 213293041 213293319 -68900345 - AluSx SINE Alu -32 280 3 1725 176 0 44 chr1 213293426 213293744 -68899920 - AluJo SINE Alu -4 308 5 24 32 0 0 chr1 213294050 213294081 -68899583 + AT_rich Low_complexity Low_complexity 1 31 0 724 200 13 13 chr1 213296465 213296614 -68897050 - MER4C LTR ERV1 -3 462 314 2493 131 38 5 chr1 213296614 213297012 -68896652 + MSTA LTR MaLR 1 411 -17 559 131 0 189 chr1 213297050 213297225 -68896439 - MER4C LTR ERV1 -147 318 177 486 256 131 6 chr1 213297462 213297622 -68896042 - MER5A DNA MER1_type -6 183 4 291 267 27 0 chr1 213297822 213297897 -68895767 + L2 LINE L2 3189 3265 -7 2522 179 37 2 chr1 213298043 213298473 -68895191 + LTR24 LTR ERV1 23 467 0 26 0 0 0 chr1 213299597 213299623 -68894041 + AT_rich Low_complexity Low_complexity 1 26 0 671 307 71 1 chr1 213300054 213300282 -68893382 - MIR SINE MIR -17 245 5 254 274 135 79 chr1 213301777 213301992 -68891672 - L2 LINE L2 -49 3223 2997 637 185 0 0 chr1 213302764 213302958 -68890706 - FLAM_A SINE Alu 0 225 32 2334 115 0 0 chr1 213304943 213305255 -68888409 + AluSq SINE Alu 1 312 -1 205 325 123 39 chr1 213306012 213306215 -68887449 - L2 LINE L2 -189 3083 2864 335 309 43 37 chr1 213306298 213306486 -68887178 - L2 LINE L2 -3 3310 3122 185 275 88 33 chr1 213306652 213306743 -68886921 - L2 LINE L2 -19 3294 3199 219 114 0 0 chr1 213307055 213307090 -68886574 + (TC)n Simple_repeat Simple_repeat 2 36 0 789 162 0 0 chr1 213307097 213307214 -68886450 - FLAM_C SINE Alu -16 117 1 313 328 125 0 chr1 213309353 213309481 -68884183 - L2 LINE L2 0 3272 3129 374 221 242 20 chr1 213309903 213310052 -68883612 - MIR SINE MIR -1 261 80 225 0 0 0 chr1 213310131 213310156 -68883508 + (TG)n Simple_repeat Simple_repeat 1 25 0 264 158 0 0 chr1 213310156 213310213 -68883451 + GA-rich Low_complexity Low_complexity 2 58 0 22 0 0 0 chr1 213310519 213310541 -68883123 + AT_rich Low_complexity Low_complexity 1 22 0 2140 117 3 0 chr1 213310780 213311095 -68882569 + AluSx SINE Alu 1 316 0 2098 123 0 46 chr1 213311096 213311420 -68882244 + AluSx SINE Alu 1 309 -3 2144 145 0 0 chr1 213312740 213313050 -68880614 + AluSx SINE Alu 1 310 -2 24 32 0 0 chr1 213314269 213314300 -68879364 + AT_rich Low_complexity Low_complexity 1 31 0 194 310 9 80 chr1 213316021 213316134 -68877530 + L2 LINE L2 3168 3272 0 257 245 0 10 chr1 213317104 213317202 -68876462 + (CAG)n Simple_repeat Simple_repeat 1 97 0 205 381 37 22 chr1 213317523 213317657 -68876007 + L2 LINE L2 2902 3037 -235 432 0 0 0 chr1 213317878 213317926 -68875738 + (TG)n Simple_repeat Simple_repeat 2 49 0 1715 103 8 0 chr1 213319797 213320040 -68873624 - L1MA4A LINE L1 -3 6300 6056 543 274 101 71 chr1 213320496 213320792 -68872872 + MER102b DNA MER1_type 1 305 -36 524 250 149 19 chr1 213321495 213321719 -68871945 - MIR SINE MIR -1 261 15 1907 159 7 10 chr1 213321757 213322066 -68871598 - AluJb SINE Alu -4 308 1 192 298 44 44 chr1 213322069 213322183 -68871481 - L2 LINE L2 0 3313 3200 411 264 129 73 chr1 213322734 213322746 -68870918 - MLT1H LTR MaLR -26 383 373 3384 142 34 36 chr1 213322746 213323358 -68870306 - LTR36 LTR ERV1 0 611 1 411 264 129 73 chr1 213323358 213323721 -68869943 - MLT1H LTR MaLR -36 373 1 779 232 172 12 chr1 213324195 213324582 -68869082 - MLT1H LTR MaLR 0 555 89 2079 96 0 18 chr1 213326081 213326353 -68867311 - AluSx SINE Alu -26 286 20 239 321 140 45 chr1 213326434 213326677 -68866987 + L2 LINE L2 2916 3181 -91 342 0 0 0 chr1 213327028 213327066 -68866598 + (TG)n Simple_repeat Simple_repeat 1 38 0 220 222 0 0 chr1 213327108 213327153 -68866511 + MIR SINE MIR 157 201 -61 1311 153 70 42 chr1 213327295 213327608 -68866056 + MER33 DNA MER1_type 3 324 0 239 241 17 0 chr1 213328291 213328349 -68865315 + MIR SINE MIR 204 262 0 391 291 74 44 chr1 213328456 213328659 -68865005 + MIR SINE MIR 46 254 -8 195 236 222 0 chr1 213329554 213329626 -68864038 - MIR SINE MIR -105 157 70 755 249 50 58 chr1 213329832 213330073 -68863591 + MIR SINE MIR 3 241 -21 200 309 0 0 chr1 213330041 213330083 -68863581 + L2 LINE L2 3214 3255 -17 * 389 289 54 68 chr1 213330742 213330826 -68862838 + L1ME LINE L1 4944 5028 -1118 2198 115 3 3 chr1 213330826 213331130 -68862534 + AluSx SINE Alu 1 304 -8 389 289 54 68 chr1 213331130 213331339 -68862325 + L1ME LINE L1 5028 5233 -913 338 308 77 26 chr1 213331351 213331750 -68861914 + L1ME LINE L1 5255 5679 -442 341 295 35 22 chr1 213331789 213332088 -68861576 + HAL1b LINE L1 1189 1339 -9 327 388 102 34 chr1 213332311 213332636 -68861028 - L2 LINE L2 -1 3271 2925 521 197 103 8 chr1 213333176 213333293 -68860371 + MIR SINE MIR 122 249 -13 1978 149 0 22 chr1 213333480 213333795 -68859869 - AluJb SINE Alu -4 308 1 682 299 194 8 chr1 213336062 213336707 -68856957 - L2 LINE L2 -2 3311 2535 2388 90 3 0 chr1 213337783 213338084 -68855580 + AluSg1 SINE Alu 1 302 -7 620 270 88 9 chr1 213341000 213341226 -68852438 + MIR SINE MIR 19 262 0 459 186 0 0 chr1 213341228 213341325 -68852339 + CT-rich Low_complexity Low_complexity 3 99 0 290 270 216 14 chr1 213341834 213341982 -68851682 + MIR SINE MIR 12 189 -73 310 341 148 13 chr1 213343460 213343832 -68849832 + L2 LINE L2 2891 3312 -1 300 232 48 71 chr1 213343991 213344231 -68849433 + L1MC/D LINE L1 5274 5507 -885 1312 181 101 52 chr1 213344254 213344602 -68849062 - MLT1A1 LTR MaLR 0 365 1 2140 153 0 0 chr1 213344939 213345246 -68848418 + AluJb SINE Alu 1 307 -5 326 226 20 69 chr1 213347468 213347570 -68846094 - L1MC4 LINE L1 -1339 6703 6607 2219 109 7 3 chr1 213347624 213347928 -68845736 + AluSq SINE Alu 1 305 -8 208 98 0 39 chr1 213349111 213349162 -68844502 + (TA)n Simple_repeat Simple_repeat 2 50 0 432 302 118 2 chr1 213351984 213352188 -68841476 + MIR SINE MIR 16 240 -22 224 264 138 11 chr1 213352313 213352400 -68841264 - L2 LINE L2 -18 3295 3198 213 273 94 47 chr1 213352408 213352536 -68841128 - L2 LINE L2 -1 3312 3179 202 246 0 33 chr1 213353650 213353711 -68839953 + L2 LINE L2 3213 3271 -1 2118 153 33 8 chr1 213353785 213354151 -68839513 - THE1C LTR MaLR 0 375 1 307 301 78 36 chr1 213354370 213354536 -68839128 + L2 LINE L2 3120 3292 -21 241 329 24 0 chr1 213354810 213354895 -68838769 + MIR SINE MIR 60 146 -116 1709 130 3 47 chr1 213354920 213355316 -68838348 + Charlie3 DNA MER1_type 1 2712 0 311 365 129 3 chr1 213355316 213355650 -68838014 + L1MC4a LINE L1 5028 5403 -743 1795 162 0 26 chr1 213356158 213356461 -68837203 + AluJo SINE Alu 1 295 -17 649 285 149 13 chr1 213356574 213356971 -68836693 + L1MC4a LINE L1 5405 5855 -1953 403 254 18 0 chr1 213357164 213357274 -68836390 + MIR SINE MIR 119 230 -32 186 103 0 0 chr1 213357900 213357929 -68835735 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 2096 128 24 0 chr1 213357958 213358256 -68835408 - AluSq SINE Alu -8 305 1 1973 139 21 51 chr1 213358600 213358975 -68834689 - THE1B LTR MaLR 0 364 1 2100 94 31 14 chr1 213363045 213363332 -68830332 - AluSp SINE Alu -21 292 1 8846 157 58 80 chr1 213363365 213364838 -68828826 + L1MC3 LINE L1 5585 6995 -790 1782 172 3 10 chr1 213364838 213365129 -68828535 - AluJo SINE Alu -21 291 3 8846 157 58 80 chr1 213365129 213365897 -68827767 + L1MC3 LINE L1 6995 7778 -7 351 323 107 55 chr1 213365959 213366287 -68827377 - L1MC/D LINE L1 -2095 5713 5369 318 240 281 0 chr1 213366287 213366383 -68827281 + L2 LINE L2 3191 3313 0 23 0 0 0 chr1 213367318 213367341 -68826323 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr1 213368940 213368967 -68824697 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 417 360 34 34 chr1 213368969 213369202 -68824462 - L2 LINE L2 -10 3262 3030 349 348 36 51 chr1 213369366 213369504 -68824160 - L2 LINE L2 -1 3271 3136 628 279 88 22 chr1 213369810 213370036 -68823628 + MIR SINE MIR 14 254 -8 394 224 0 0 chr1 213370149 213370234 -68823430 + MIR SINE MIR 172 256 -6 295 348 67 20 chr1 213370172 213370392 -68823272 - MIR SINE MIR -10 252 25 * 259 288 70 70 chr1 213370529 213370578 -68823086 - L1ME4a LINE L1 -212 5909 5861 198 0 0 0 chr1 213370578 213370600 -68823064 + (TTTTC)n Simple_repeat Simple_repeat 2 23 0 1899 103 0 4 chr1 213370602 213370854 -68822810 - AluSq SINE Alu -28 285 35 259 288 70 70 chr1 213370854 213371145 -68822519 - L1ME4a LINE L1 -260 5861 5566 241 369 131 0 chr1 213371375 213371505 -68822159 - L2 LINE L2 -2 3270 3124 551 253 84 111 chr1 213372005 213372266 -68821398 + MIR SINE MIR 7 260 -2 525 226 206 7 chr1 213372384 213372539 -68821125 + MIR SINE MIR 71 256 -6 339 150 0 0 chr1 213372540 213372600 -68821064 + (ATG)n Simple_repeat Simple_repeat 3 62 0 246 62 0 0 chr1 213372730 213372762 -68820902 + (T)n Simple_repeat Simple_repeat 1 32 0 490 300 100 21 chr1 213374286 213374526 -68819138 + MIR SINE MIR 4 262 0 1721 191 0 14 chr1 213374606 213374900 -68818764 + AluJo SINE Alu 1 290 -22 290 289 36 0 chr1 213374988 213375071 -68818593 + MIR SINE MIR 65 150 -58 332 268 0 12 chr1 213375503 213375585 -68818079 + L2 LINE L2 3233 3313 0 218 263 42 42 chr1 213376278 213376373 -68817291 - MIR SINE MIR -30 232 138 218 328 30 0 chr1 213376506 213376573 -68817091 - MIR SINE MIR -104 104 36 312 322 113 17 chr1 213376766 213376881 -68816783 - L2 LINE L2 -2 3270 3145 306 191 32 0 chr1 213378274 213378337 -68815327 + MIR SINE MIR 81 145 -63 789 287 88 13 chr1 213378377 213378684 -68814980 - MLT1J LTR MaLR -74 437 108 5064 179 17 23 chr1 213379261 213379787 -68813877 - L1MB3 LINE L1 0 6183 5655 2307 90 7 0 chr1 213379787 213380087 -68813577 - AluSp SINE Alu -6 307 6 5064 179 17 23 chr1 213380087 213381012 -68812652 - L1MB3 LINE L1 -528 5655 4738 3879 180 31 14 chr1 213380985 213381770 -68811894 - L1MB3 LINE L1 -1836 4310 3513 * 1275 267 64 11 chr1 213381832 213382211 -68811453 + MLT1I LTR MaLR 1 365 0 2122 123 13 3 chr1 213382565 213382874 -68810790 - AluSx SINE Alu 0 312 1 298 326 158 25 chr1 213383098 213383294 -68810370 - MIR SINE MIR -1 261 40 645 201 255 5 chr1 213384379 213384563 -68809101 - MIR SINE MIR 0 262 33 1519 140 61 29 chr1 213385223 213385502 -68808162 + AluJo SINE Alu 13 300 -12 287 307 84 22 chr1 213386543 213386757 -68806907 + L1P3 LINE L1 5406 5643 -478 2090 209 57 64 chr1 213386772 213387318 -68806346 - MLT1F LTR MaLR 0 542 1 365 260 102 11 chr1 213387382 213387559 -68806105 + L1MC4a LINE L1 5770 5962 -1846 2083 151 0 0 chr1 213388296 213388595 -68805069 + AluSx SINE Alu 1 299 -13 418 248 48 0 chr1 213388598 213388703 -68804961 - L2 LINE L2 -23 3290 3181 209 320 136 40 chr1 213388974 213389099 -68804565 - MER91A DNA MER1_type -59 137 1 * 302 296 87 79 chr1 213389099 213389371 -68804293 - L2 LINE L2 -215 3057 2781 180 0 0 0 chr1 213389564 213389584 -68804080 + (T)n Simple_repeat Simple_repeat 1 20 0 441 50 0 0 chr1 213390358 213390418 -68803246 + (CA)n Simple_repeat Simple_repeat 2 61 0 939 52 0 0 chr1 213390553 213390669 -68802995 - AluY SINE Alu -7 304 189 1975 136 45 131 chr1 213390744 213391279 -68802385 + Charlie4a DNA MER1_type 20 508 0 241 262 131 0 chr1 213391285 213391369 -68802295 + MIR SINE MIR 49 143 -119 33 43 0 0 chr1 213391572 213391619 -68802045 + AT_rich Low_complexity Low_complexity 1 47 0 304 217 33 0 chr1 213392028 213392088 -68801576 + Tigger5 DNA MER2_type 1 62 -2261 * 988 144 6 0 chr1 213392086 213392246 -68801418 + Tigger5 DNA MER2_type 2062 2222 -101 1986 136 0 7 chr1 213392658 213392980 -68800684 - AluJb SINE Alu 0 320 1 364 162 13 3 chr1 213393872 213394106 -68799558 + AluJb SINE Alu 5 301 -1 503 269 122 82 chr1 213394371 213394873 -68798791 + L1ME4a LINE L1 5320 5841 -280 207 224 17 35 chr1 213395151 213395209 -68798455 + MIR SINE MIR 195 251 -11 191 184 0 53 chr1 213395177 213395215 -68798449 + L2 LINE L2 3267 3302 -11 * 389 273 75 57 chr1 213397116 213397343 -68796321 + L2 LINE L2 3083 3313 0 270 183 0 0 chr1 213397659 213397730 -68795934 + (CA)n Simple_repeat Simple_repeat 1 71 0 218 32 32 0 chr1 213398224 213398255 -68795409 + (CA)n Simple_repeat Simple_repeat 2 33 0 3667 68 0 0 chr1 213399397 213399841 -68793823 - L1PB1 LINE L1 0 6151 5708 273 333 75 17 chr1 213400650 213400824 -68792840 - L3 LINE CR1 -12 1565 1382 379 253 68 5 chr1 213400824 213401031 -68792633 + MIR SINE MIR 85 260 -2 384 291 13 40 chr1 213401047 213401198 -68792466 + MIR SINE MIR 2 148 -114 1906 167 82 21 chr1 213401230 213401608 -68792056 + MSTA LTR MaLR 1 401 -27 1038 109 6 11 chr1 213401615 213401790 -68791874 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 1639 137 39 20 chr1 213401796 213402051 -68791613 - AluJb SINE Alu -43 269 10 1007 135 0 0 chr1 213402054 213402195 -68791469 - AluJo SINE Alu -171 141 1 234 163 0 23 chr1 213402195 213402238 -68791426 + MSTA LTR MaLR 387 428 0 1690 106 0 68 chr1 213403755 213404042 -68789622 - AluSg SINE Alu 0 303 35 385 204 45 23 chr1 213406048 213406136 -68787528 + MIR SINE MIR 90 179 -83 222 287 174 0 chr1 213406268 213406383 -68787281 + MIR SINE MIR 81 215 -47 2132 114 14 0 chr1 213406458 213406748 -68786916 - AluSx SINE Alu -18 294 1 267 235 301 36 chr1 213406756 213406922 -68786742 + HAL1 LINE L1 100 309 -2198 347 257 43 57 chr1 213407089 213407229 -68786435 + MIR3 SINE MIR 42 179 -29 460 283 90 49 chr1 213407391 213407635 -68786029 - MIR SINE MIR 0 262 9 1008 216 48 12 chr1 213410013 213410335 -68783329 + LTR38B LTR ERV1 160 497 -59 1796 102 0 4 chr1 213410348 213410593 -68783071 - L1MB3 LINE L1 -7 6176 5933 689 213 0 8 chr1 213411720 213411847 -68781817 + FLAM_A SINE Alu 2 127 -6 28 48 0 0 chr1 213412256 213412298 -68781366 + AT_rich Low_complexity Low_complexity 1 42 0 1909 157 50 35 chr1 213412907 213413155 -68780509 - MER7A DNA MER2_type -2692 346 92 2812 3 0 13 chr1 213413155 213413467 -68780197 + AluYa5 SINE Alu 1 308 -3 1909 157 50 35 chr1 213413467 213413561 -68780103 - MER7A DNA MER2_type -2946 92 1 303 276 147 39 chr1 213414016 213414172 -68779492 + MIR SINE MIR 78 250 -12 256 356 0 0 chr1 213414136 213414223 -68779441 - MIR SINE MIR 0 262 176 * 2300 98 3 0 chr1 213414815 213415111 -68778553 + AluSg SINE Alu 1 297 -13 3846 89 16 2 chr1 213415296 213415801 -68777863 + MER75 DNA T2_type 1 512 -2 702 125 0 0 chr1 213415880 213415984 -68777680 + L1PA16 LINE L1 6054 6157 -9 34 0 0 0 chr1 213415986 213416020 -68777644 + AT_rich Low_complexity Low_complexity 1 34 0 2170 115 0 32 chr1 213416056 213416369 -68777295 + AluSx SINE Alu 1 303 -9 192 77 0 0 chr1 213417755 213417781 -68775883 + (A)n Simple_repeat Simple_repeat 1 26 0 294 301 101 45 chr1 213418104 213418265 -68775399 + MLT1K LTR MaLR 379 554 -34 2458 92 0 0 chr1 213418265 213418568 -68775096 - AluSx SINE Alu -9 303 1 294 301 101 45 chr1 213418568 213418605 -68775059 + MLT1K LTR MaLR 554 588 0 452 313 106 12 chr1 213418826 213419082 -68774582 + L2 LINE L2 2602 2881 -433 337 229 42 10 chr1 213419095 213419191 -68774473 + MLT1D-int LTR MaLR 1273 1371 0 1725 218 157 22 chr1 213419191 213419636 -68774028 + MLT1D LTR MaLR 1 505 0 2249 109 0 13 chr1 213420086 213420399 -68773265 - AluSg SINE Alu -1 309 1 263 209 75 15 chr1 213420928 213420995 -68772669 + MLT1I LTR MaLR 1 71 -338 677 134 101 0 chr1 213420996 213421115 -68772549 - HSMAR2 DNA Mariner -27 1275 1145 195 42 0 0 chr1 213421137 213421161 -68772503 + (A)n Simple_repeat Simple_repeat 1 24 0 1887 149 7 45 chr1 213421187 213421495 -68772169 - AluSx SINE Alu -16 296 1 705 107 10 0 chr1 213421524 213421627 -68772037 - FLAM_C SINE Alu 0 143 40 2489 84 6 0 chr1 213421641 213421952 -68771712 - AluSq SINE Alu 0 313 1 7782 107 8 3 chr1 213421988 213423061 -68770603 - HSMAR2 DNA Mariner -221 1081 4 289 265 0 0 chr1 213423064 213423132 -68770532 + MLT1I LTR MaLR 68 135 -274 484 247 95 19 chr1 213423185 213423288 -68770376 + MLT1I LTR MaLR 237 358 -51 2253 107 0 10 chr1 213423288 213423588 -68770076 + AluSx SINE Alu 1 297 -15 484 247 95 19 chr1 213423588 213423642 -68770022 + MLT1I LTR MaLR 358 406 -3 228 35 0 0 chr1 213424963 213424992 -68768672 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2226 104 0 0 chr1 213424994 213425282 -68768382 - AluSx SINE Alu -24 288 1 21 0 0 0 chr1 213425600 213425621 -68768043 + AT_rich Low_complexity Low_complexity 1 21 0 439 250 34 34 chr1 213425765 213425913 -68767751 - MER5A DNA MER1_type -5 184 37 216 97 0 0 chr1 213426268 213426299 -68767365 + (T)n Simple_repeat Simple_repeat 1 31 0 3078 247 18 5 chr1 213426492 213427226 -68766438 + L1ME1 LINE L1 5418 6160 -6 3270 185 66 51 chr1 213427321 213427609 -68766055 + Charlie1a DNA MER1_type 10 292 -2469 6228 89 32 59 chr1 213427609 213428429 -68765235 - L1PA13 LINE L1 -4 6159 5319 2609 24 7 3 chr1 213428429 213428726 -68764938 - AluY SINE Alu -13 298 1 6228 89 32 59 chr1 213428726 213429668 -68763996 - L1PA13 LINE L1 -844 5319 4354 405 0 0 0 chr1 213429668 213429713 -68763951 + (TG)n Simple_repeat Simple_repeat 2 46 0 6228 89 32 59 chr1 213429713 213429799 -68763865 - L1PA13 LINE L1 -1809 4354 4320 1554 143 147 0 chr1 213429799 213430058 -68763606 - AluSx SINE Alu -5 297 1 6228 89 32 59 chr1 213430058 213430085 -68763579 - L1PA13 LINE L1 -1843 4320 4294 3270 185 66 51 chr1 213430085 213430558 -68763106 + Charlie1a DNA MER1_type 292 782 -673 229 179 0 0 chr1 213430566 213430605 -68763059 + Charlie1a DNA MER1_type 1417 1455 0 903 191 18 131 chr1 213430608 213430891 -68762773 + MIR SINE MIR 12 262 0 180 187 176 44 chr1 213431504 213431595 -68762069 - L2 LINE L2 -1 3271 3169 1170 192 68 56 chr1 213432988 213433327 -68760337 - MER2 DNA MER2_type -1 343 1 259 252 28 56 chr1 213433495 213433638 -68760026 + L1ME3 LINE L1 5038 5176 -970 503 255 58 34 chr1 213433644 213433668 -68759996 + L1ME3 LINE L1 5739 5761 -409 2539 62 0 0 chr1 213433668 213433972 -68759692 + AluY SINE Alu 1 304 -7 503 255 58 34 chr1 213433972 213434155 -68759509 + L1ME3 LINE L1 5761 5951 -219 231 184 0 0 chr1 213434271 213434309 -68759355 + L1ME3 LINE L1 6044 6081 -81 207 0 0 0 chr1 213435415 213435438 -68758226 + (TG)n Simple_repeat Simple_repeat 2 24 0 318 366 32 0 chr1 213435858 213436079 -68757585 + L1ME4a LINE L1 5729 5956 -214 24 32 0 0 chr1 213436261 213436292 -68757372 + AT_rich Low_complexity Low_complexity 1 31 0 1345 209 49 11 chr1 213436451 213436938 -68756726 - MER34 LTR ERV1 0 542 11 2234 118 0 13 chr1 213438731 213439045 -68754619 + AluSx SINE Alu 1 310 -2 474 262 76 48 chr1 213440964 213441174 -68752490 - MIR SINE MIR -16 246 31 25 65 0 0 chr1 213441720 213441766 -68751898 + AT_rich Low_complexity Low_complexity 1 46 0 1022 159 154 19 chr1 213441905 213442113 -68751551 + MER46A DNA MER2_type 1 236 0 2162 126 3 3 chr1 213442310 213442611 -68751053 - AluSx SINE Alu -11 301 1 2394 99 0 0 chr1 213443764 213444068 -68749596 + AluSg SINE Alu 1 304 -6 21 0 0 0 chr1 213444906 213444927 -68748737 + AT_rich Low_complexity Low_complexity 1 21 0 2241 117 0 3 chr1 213445656 213445965 -68747699 + AluSx SINE Alu 1 308 -4 399 284 52 0 chr1 213447481 213447597 -68746067 + L2 LINE L2 3151 3272 0 268 242 88 11 chr1 213447819 213447910 -68745754 + MIR SINE MIR 63 160 -102 2097 133 0 20 chr1 213448438 213448739 -68744925 + AluJo SINE Alu 1 295 -17 423 259 16 58 chr1 213449593 213449782 -68743882 + L1MB8 LINE L1 5688 5868 -302 240 300 0 0 chr1 213449741 213449831 -68743833 - L1MC4 LINE L1 -1339 6703 6614 * 384 200 0 0 chr1 213449971 213450051 -68743613 + (TA)n Simple_repeat Simple_repeat 1 80 0 249 281 79 0 chr1 213450433 213450547 -68743117 + L1ME4a LINE L1 5969 6091 -30 1444 163 118 13 chr1 213452376 213452682 -68740982 + MER58B DNA MER1_type 4 341 0 2489 57 3 7 chr1 213452850 213453149 -68740515 + AluY SINE Alu 1 298 -13 1122 151 16 0 chr1 213454118 213454304 -68739360 + L1PB3 LINE L1 5966 6154 0 1635 103 179 0 chr1 213454732 213454984 -68738680 + AluSx SINE Alu 1 297 -5 614 113 191 0 chr1 213455046 213455161 -68738503 + MER44D DNA MER2_type 2 408 -201 1431 105 5 0 chr1 213455261 213455451 -68738213 - AluSx SINE Alu -108 204 14 697 174 9 0 chr1 213455464 213455579 -68738085 + MER44D DNA MER2_type 494 609 0 970 131 0 0 chr1 213456100 213456237 -68737427 + AluSg/x SINE Alu 162 298 -14 417 197 111 0 chr1 213456423 213456540 -68737124 - MIR SINE MIR -13 249 120 2497 98 77 26 chr1 213456720 213457187 -68736477 - MER1A DNA MER1_type 0 529 1 1473 163 91 41 chr1 213457865 213458184 -68735480 - L1MA4 LINE L1 0 6300 5966 395 202 11 0 chr1 213458721 213458815 -68734849 + (TG)n Simple_repeat Simple_repeat 2 96 0 180 111 0 0 chr1 213459151 213459178 -68734486 + (TAG)n Simple_repeat Simple_repeat 1 27 0 266 223 245 0 chr1 213459181 213459275 -68734389 - MIR SINE MIR -5 257 141 2399 99 3 0 chr1 213459897 213460201 -68733463 - AluSx SINE Alu -7 305 1 773 217 44 0 chr1 213460264 213460444 -68733220 - MIR SINE MIR -30 232 45 323 291 109 0 chr1 213465944 213466054 -68727610 - MIR SINE MIR -12 250 129 217 216 0 0 chr1 213467527 213467564 -68726100 + (CA)n Simple_repeat Simple_repeat 2 38 0 281 306 147 47 chr1 213468083 213468403 -68725261 - L2 LINE L2 0 3272 2921 497 242 16 37 chr1 213470186 213470376 -68723288 - Charlie7 DNA MER1_type 0 2612 2427 304 316 10 0 chr1 213470359 213470457 -68723207 - Charlie7 DNA MER1_type -2509 103 5 * 217 171 24 0 chr1 213471373 213471414 -68722250 + (CA)n Simple_repeat Simple_repeat 1 42 0 205 225 0 0 chr1 213471421 213471461 -68722203 + MIR SINE MIR 82 121 -87 522 0 0 0 chr1 213472302 213472360 -68721304 + (CA)n Simple_repeat Simple_repeat 1 58 0 333 231 92 9 chr1 213473406 213473545 -68720119 + L1ME3A LINE L1 5811 5961 -208 234 128 0 0 chr1 213474595 213474634 -68719030 + (CA)n Simple_repeat Simple_repeat 2 40 0 435 211 79 0 chr1 213475031 213475145 -68718519 + MER5B DNA MER1_type 4 126 -52 424 251 67 13 chr1 213477094 213477257 -68716407 - MIR SINE MIR -63 145 26 472 163 20 10 chr1 213478971 213479069 -68714595 + L1ME1 LINE L1 4590 4688 -1458 1325 222 52 6 chr1 213479190 213479537 -68714127 + L1ME1 LINE L1 4898 5260 -886 2766 214 92 29 chr1 213479545 213480299 -68713365 + L1ME1 LINE L1 5376 6334 0 2056 118 3 10 chr1 213480432 213480738 -68712926 - AluSx SINE Alu -8 304 1 264 186 0 0 chr1 213480843 213480902 -68712762 + (GTATG)n Simple_repeat Simple_repeat 2 60 0 2066 158 68 3 chr1 213480921 213481275 -68712389 + MLT1B LTR MaLR 1 377 -13 185 56 0 56 chr1 213533842 213533878 -68659786 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 684 241 123 35 chr1 213534846 213535107 -68658557 - L1ME3A LINE L1 -30 6140 5857 200 356 37 31 chr1 213536239 213536402 -68657262 - L2 LINE L2 -1220 2094 1931 359 297 146 6 chr1 213536814 213536979 -68656685 + MIR SINE MIR 57 244 -18 776 152 0 23 chr1 213540785 213540917 -68652747 - FLAM_C SINE Alu -14 129 1 275 288 153 0 chr1 213541031 213541142 -68652522 + MIR SINE MIR 58 185 -77 1975 224 161 11 chr1 213544733 213545233 -68648431 + L1ME1 LINE L1 5317 5952 -214 984 142 71 0 chr1 213545233 213545388 -68648276 + FAM SINE Alu 1 166 -9 1975 224 161 11 chr1 213545388 213545585 -68648079 + L1ME1 LINE L1 5952 6118 -48 2080 141 0 16 chr1 213546921 213547227 -68646437 + AluSx SINE Alu 1 301 -11 233 245 0 0 chr1 213547314 213547367 -68646297 + A-rich Low_complexity Low_complexity 1 53 0 753 168 45 0 chr1 213549100 213549255 -68644409 - L1MA8 LINE L1 -6 6285 6124 841 145 0 0 chr1 213549277 213549401 -68644263 - AluJb SINE Alu -188 124 1 1417 192 60 4 chr1 213549419 213549564 -68644100 - AluJo SINE Alu -31 281 146 207 69 0 0 chr1 213549564 213549593 -68644071 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1417 192 60 4 chr1 213549593 213549713 -68643951 - AluJo SINE Alu -166 146 1 2871 116 55 8 chr1 213549713 213550187 -68643477 - L1MA8 LINE L1 -152 6139 5644 557 238 8 0 chr1 213551327 213551453 -68642211 + FLAM_C SINE Alu 11 137 -6 260 269 282 25 chr1 213552044 213552289 -68641375 - L3 LINE CR1 -78 1499 1192 4119 217 59 51 chr1 213552738 213553180 -68640484 + L1MB5 LINE L1 4021 4458 -1688 2374 69 0 7 chr1 213553180 213553471 -68640193 + AluSg SINE Alu 9 297 -13 4119 217 59 51 chr1 213553471 213554271 -68639393 + L1MB5 LINE L1 4458 5273 -873 1105 257 84 55 chr1 213554274 213554788 -68638876 - MER76 LTR ERV -30 658 130 1401 211 56 33 chr1 213554798 213555225 -68638439 + LTR56 LTR ERV1 9 445 0 458 229 55 0 chr1 213555254 213555363 -68638301 - MER76 LTR ERV -573 115 1 2302 184 96 46 chr1 213555363 213555968 -68637696 + L1MB5 LINE L1 5271 5905 -269 198 0 0 0 chr1 213556123 213556145 -68637519 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1099 185 21 59 chr1 213556570 213556808 -68636856 + MER21B LTR ERV1 360 588 -275 1478 200 83 43 chr1 213556833 213557311 -68636353 - MER21B LTR ERV1 -27 847 303 299 241 9 52 chr1 213557874 213557990 -68635674 + T-rich Low_complexity Low_complexity 5 115 0 1185 195 130 11 chr1 213558979 213559240 -68634424 - MER21B LTR ERV1 -553 310 19 2242 125 25 11 chr1 213559317 213559684 -68633980 - THE1C LTR MaLR -3 372 1 1588 154 142 22 chr1 213561200 213561524 -68632140 - MLT1A1 LTR MaLR -2 363 1 858 133 0 53 chr1 213561568 213561719 -68631945 + FLAM_C SINE Alu 1 143 0 1634 165 123 72 chr1 213561997 213562106 -68631558 + Charlie1b DNA MER1_type 1 103 -2658 2103 104 0 20 chr1 213562106 213562405 -68631259 + AluSq SINE Alu 1 293 -20 276 77 0 0 chr1 213562408 213562447 -68631217 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1634 165 123 72 chr1 213562447 213562830 -68630834 + Charlie1b DNA MER1_type 104 522 -1 186 43 0 0 chr1 213562941 213562964 -68630700 + (CCA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr1 213563113 213563134 -68630530 + AT_rich Low_complexity Low_complexity 1 21 0 839 150 8 23 chr1 213564011 213564144 -68629520 + AluJo SINE Alu 1 131 -181 226 219 31 31 chr1 213564145 213564273 -68629391 + (TA)n Simple_repeat Simple_repeat 1 128 0 24 32 0 0 chr1 213564571 213564602 -68629062 + AT_rich Low_complexity Low_complexity 1 31 0 551 243 9 0 chr1 213565235 213565346 -68628318 + AluJo SINE Alu 132 243 -69 301 103 47 28 chr1 213565347 213565454 -68628210 + (TA)n Simple_repeat Simple_repeat 1 109 0 26 0 0 0 chr1 213565483 213565509 -68628155 + AT_rich Low_complexity Low_complexity 1 26 0 759 174 49 7 chr1 213565686 213565830 -68627834 - FRAM SINE Alu -15 151 2 2319 97 0 7 chr1 213565967 213566275 -68627389 - AluSg SINE Alu -4 306 1 2086 129 0 0 chr1 213566286 213566573 -68627091 - AluSx SINE Alu -25 287 1 1816 155 14 3 chr1 213566652 213566942 -68626722 - AluJb SINE Alu -19 293 1 917 268 23 18 chr1 213566952 213567172 -68626492 - MIR SINE MIR -29 233 13 359 273 135 8 chr1 213567618 213567761 -68625903 + MER20B DNA MER1_type 55 215 -4 1021 255 37 15 chr1 213567808 213568134 -68625530 + L1MA9 LINE L1 5947 6279 -33 31 26 0 0 chr1 213568497 213568535 -68625129 + AT_rich Low_complexity Low_complexity 1 38 0 1690 157 3 27 chr1 213568976 213569276 -68624388 - AluJb SINE Alu -19 293 1 610 283 28 17 chr1 213569486 213569666 -68623998 + MIR SINE MIR 77 258 -4 474 163 12 0 chr1 213569709 213569789 -68623875 - Tigger5 DNA MER2_type -1 2322 2242 360 156 13 78 chr1 213569782 213569859 -68623805 + Tigger5 DNA MER2_type 2245 2316 -7 * 309 238 16 0 chr1 213569870 213569933 -68623731 - Tigger5 DNA MER2_type -2259 64 1 22 35 0 0 chr1 213570293 213570322 -68623342 + AT_rich Low_complexity Low_complexity 1 29 0 2619 45 0 0 chr1 213570544 213570854 -68622810 + AluY SINE Alu 1 310 -1 24 0 0 0 chr1 213571965 213571989 -68621675 + AT_rich Low_complexity Low_complexity 1 24 0 645 283 50 30 chr1 213572320 213572518 -68621146 + MIR SINE MIR 60 261 -1 265 324 48 10 chr1 213572508 213572643 -68621021 - MIR SINE MIR -65 143 20 * 470 73 0 0 chr1 213573069 213573137 -68620527 - HY3 scRNA scRNA 0 101 34 2473 53 0 3 chr1 213573332 213573631 -68620033 + AluY SINE Alu 1 298 -13 25 0 0 0 chr1 213573740 213573765 -68619899 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 213573820 213573843 -68619821 + AT_rich Low_complexity Low_complexity 1 23 0 368 288 135 37 chr1 213573917 213574132 -68619532 - MIR SINE MIR -4 258 23 832 293 9 9 chr1 213574957 213575182 -68618482 + MIR SINE MIR 6 230 -32 767 206 0 0 chr1 213575742 213575888 -68617776 + MLT1B LTR MaLR 1 146 -244 1728 175 12 59 chr1 213576430 213576614 -68617050 + MLT1B LTR MaLR 1 192 -198 2013 124 7 10 chr1 213576614 213576920 -68616744 + AluJb SINE Alu 6 310 -2 1728 175 12 59 chr1 213576920 213577140 -68616524 + MLT1B LTR MaLR 192 386 -4 3564 152 53 24 chr1 213577955 213578651 -68615013 + L1MB3 LINE L1 5422 6137 -46 462 356 60 14 chr1 213578851 213579132 -68614532 + L2 LINE L2 1799 2092 -1222 630 309 58 18 chr1 213580470 213580972 -68612692 + HAL1 LINE L1 1115 1636 -871 247 300 0 0 chr1 213581450 213581499 -68612165 + A-rich Low_complexity Low_complexity 1 52 -38 769 87 0 29 chr1 213581499 213581602 -68612062 + HY3 scRNA scRNA 1 100 -1 247 300 0 0 chr1 213581602 213581642 -68612022 + A-rich Low_complexity Low_complexity 51 90 0 43727 33 24 1 chr1 213581709 213587715 -68605949 + L1PA2 LINE L1 2 6150 -5 2543 140 107 22 chr1 213587984 213588597 -68605067 + pTR5 LTR ERV1 119 274 -440 251 296 10 0 chr1 213588599 213588697 -68604967 + LTR30 LTR ERV1 544 642 -80 1559 107 0 9 chr1 213588700 213588924 -68604740 + pTR5 LTR ERV1 172 393 -2045 194 239 14 42 chr1 213588925 213588996 -68604668 - MER5A DNA MER1_type -114 75 7 1354 167 71 34 chr1 213589008 213589357 -68604307 + MLT1C LTR MaLR 3 332 -58 800 194 67 0 chr1 213589362 213589527 -68604137 - AluJo SINE Alu -10 302 127 340 43 213 0 chr1 213589527 213589574 -68604090 + MLT1C LTR MaLR 334 390 0 2124 116 37 9 chr1 213589778 213589948 -68603716 - Tigger7 DNA MER2_type -8 2579 2415 2085 132 13 0 chr1 213589948 213590252 -68603412 + AluSq SINE Alu 1 308 -5 2124 116 37 9 chr1 213590252 213590409 -68603255 - Tigger7 DNA MER2_type -172 2415 2243 738 173 346 0 chr1 213590407 213590609 -68603055 + Tigger7 DNA MER2_type 76 347 -2140 * 273 209 179 0 chr1 213590606 213590673 -68602991 - Tigger7 DNA MER2_type -653 80 2 * 224 245 11 53 chr1 213597114 213597208 -68596456 - L2 LINE L2 -292 2980 2891 1652 135 15 23 chr1 213598050 213598309 -68595355 - AluJo SINE Alu -15 297 41 2162 107 27 3 chr1 213598317 213598616 -68595048 - AluSx SINE Alu -6 306 1 186 43 0 0 chr1 213599127 213599150 -68594514 + (TTCCC)n Simple_repeat Simple_repeat 3 25 0 2280 84 7 3 chr1 213600703 213601000 -68592664 - AluSp SINE Alu -15 298 1 549 257 128 5 chr1 213601692 213601879 -68591785 + MIR SINE MIR 4 213 -49 407 40 0 0 chr1 213602355 213602405 -68591259 - AluSp/q SINE Alu -14 299 250 404 305 102 24 chr1 213602432 213602803 -68590861 - L1ME LINE L1 -512 5658 5259 409 312 114 15 chr1 213604419 213604621 -68589043 - MIR SINE MIR -38 224 3 198 308 258 43 chr1 213604891 213605452 -68588212 + L2 LINE L2 1946 2695 -619 215 216 20 20 chr1 213605452 213605503 -68588161 + MIR SINE MIR 101 151 -111 198 308 258 43 chr1 213605503 213605514 -68588150 + L2 LINE L2 2695 2702 -612 1592 123 135 0 chr1 213605516 213605808 -68587856 - MER1B DNA MER1_type 0 339 1 266 361 69 43 chr1 213606140 213606355 -68587309 + L2 LINE L2 2973 3198 -74 1160 221 53 90 chr1 213606355 213606766 -68586898 - MSTD LTR MaLR 0 396 1 266 361 69 43 chr1 213606766 213606827 -68586837 + L2 LINE L2 3198 3256 -16 235 192 51 90 chr1 213606849 213606927 -68586737 + MIR SINE MIR 118 192 -70 2240 106 0 0 chr1 213607615 213607940 -68585724 + AluSq SINE Alu 2 326 0 583 254 15 0 chr1 213609165 213609299 -68584365 + MIR SINE MIR 62 197 -65 219 264 132 0 chr1 213609304 213609395 -68584269 + MIR SINE MIR 156 258 -4 27 29 0 0 chr1 213609513 213609547 -68584117 + AT_rich Low_complexity Low_complexity 1 34 0 868 145 0 0 chr1 213609558 213609675 -68583989 - FLAM_C SINE Alu -16 117 1 234 229 31 0 chr1 213610263 213610359 -68583305 + (TA)n Simple_repeat Simple_repeat 2 100 0 180 77 0 0 chr1 213611111 213611137 -68582527 + (CA)n Simple_repeat Simple_repeat 1 26 0 969 179 12 6 chr1 213612214 213612376 -68581288 + FRAM SINE Alu 1 163 -13 437 246 39 23 chr1 213612473 213612532 -68581132 - MER94 DNA DNA 0 134 77 2460 118 33 36 chr1 213612532 213612897 -68580767 - THE1B LTR MaLR 0 364 1 437 246 39 23 chr1 213612897 213612967 -68580697 - MER94 DNA DNA -57 77 3 2146 105 7 13 chr1 213614034 213614339 -68579325 + AluSx SINE Alu 3 305 -7 23 0 0 0 chr1 213614379 213614402 -68579262 + AT_rich Low_complexity Low_complexity 1 23 0 2165 106 27 0 chr1 213614534 213614835 -68578829 - AluSq SINE Alu -4 309 1 417 293 92 29 chr1 213614937 213615111 -68578553 - MIR SINE MIR -46 216 32 216 265 0 0 chr1 213615324 213615392 -68578272 + T-rich Low_complexity Low_complexity 1 68 0 2002 148 3 3 chr1 213615437 213615742 -68577922 + AluSx SINE Alu 1 305 -7 2196 92 13 7 chr1 213616193 213616496 -68577168 - AluSx SINE Alu -7 305 1 1782 153 6 32 chr1 213616675 213616989 -68576675 + MER1B DNA MER1_type 1 306 -33 591 287 16 37 chr1 213617028 213617272 -68576392 - L2 LINE L2 -877 2437 2199 219 335 180 0 chr1 213617437 213617643 -68576021 - L2 LINE L2 -1138 2176 1934 25 31 0 0 chr1 213618203 213618235 -68575429 + AT_rich Low_complexity Low_complexity 1 32 0 467 45 15 0 chr1 213618327 213618393 -68575271 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 898 284 82 29 chr1 213618480 213618930 -68574734 - MLT1J LTR MaLR -35 476 3 2248 131 0 0 chr1 213619707 213620019 -68573645 - AluSx SINE Alu 0 312 1 2877 115 8 66 chr1 213620046 213620543 -68573121 + LTR9 LTR ERV1 1 468 -144 1049 134 81 5 chr1 213620598 213620807 -68572857 + Charlie5 DNA MER1_type 2361 2585 -27 202 0 0 83 chr1 213620889 213620925 -68572739 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1636 161 0 57 chr1 213620933 213621232 -68572432 - AluJo SINE Alu -15 297 16 400 348 71 24 chr1 213621279 213621532 -68572132 - L3 LINE CR1 -64 1513 1249 654 289 28 30 chr1 213622051 213622068 -68571596 + MLT1H LTR MaLR 48 64 -485 2087 133 0 0 chr1 213622068 213622368 -68571296 + AluSx SINE Alu 1 300 -12 654 289 28 30 chr1 213622368 213622572 -68571092 + MLT1H LTR MaLR 64 299 -250 358 234 62 67 chr1 213622580 213622761 -68570903 + MLT1H LTR MaLR 278 543 -6 565 262 55 0 chr1 213622857 213623040 -68570624 + L2 LINE L2 2819 3011 -302 3048 103 25 35 chr1 213623129 213623722 -68569942 + MER4E LTR ERV1 1 766 0 2402 56 0 47 chr1 213624002 213624322 -68569342 + AluY SINE Alu 1 305 -6 917 257 102 30 chr1 213624359 213624721 -68568943 + MLT1D LTR MaLR 1 388 -117 284 330 83 0 chr1 213624814 213624923 -68568741 + MIR3 SINE MIR 58 175 -33 238 114 0 0 chr1 213625025 213625060 -68568604 + MER103 DNA DNA 1 35 -131 260 258 15 0 chr1 213625419 213625485 -68568179 + MLT1K LTR MaLR 522 588 0 2022 123 0 58 chr1 213625761 213626086 -68567578 - AluSx SINE Alu -6 306 1 267 104 0 0 chr1 213626158 213626206 -68567458 + (TG)n Simple_repeat Simple_repeat 1 48 0 1707 158 32 4 chr1 213626206 213626474 -68567190 - AluJb SINE Alu -31 281 3 198 0 0 0 chr1 213627136 213627158 -68566506 + (A)n Simple_repeat Simple_repeat 1 22 0 2362 93 3 3 chr1 213627470 213627772 -68565892 - AluSg SINE Alu -8 302 1 275 323 68 12 chr1 213627782 213627943 -68565721 - L1ME4a LINE L1 -3 6118 5949 32 26 0 0 chr1 213628433 213628472 -68565192 + AT_rich Low_complexity Low_complexity 1 39 0 400 293 20 34 chr1 213628693 213628840 -68564824 - LTR67 LTR ERVL -410 147 3 3062 208 39 34 chr1 213628949 213629017 -68564647 - L1ME1 LINE L1 -12 6154 6088 509 62 0 175 chr1 213629017 213629114 -68564550 + MADE1 DNA Mariner 1 80 0 3062 208 39 34 chr1 213629114 213629757 -68563907 - L1ME1 LINE L1 -78 6088 5439 1979 132 11 0 chr1 213629764 213630044 -68563620 + AluSx SINE Alu 1 325 0 379 0 0 0 chr1 213630044 213630086 -68563578 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1623 194 96 27 chr1 213630180 213630587 -68563077 + MSTB2 LTR MaLR 15 449 -8 834 279 83 81 chr1 213631133 213631616 -68562048 + L3 LINE CR1 649 1132 -445 234 299 156 47 chr1 213631644 213631897 -68561767 + L2 LINE L2 1883 2190 -1124 1537 164 65 4 chr1 213631897 213632172 -68561492 - AluJb SINE Alu -20 292 1 234 299 156 47 chr1 213632172 213632283 -68561381 + L2 LINE L2 2190 2287 -1027 4858 59 32 6 chr1 213632283 213633378 -68560286 + MER11A LTR ERVK 1 1266 0 462 302 134 49 chr1 213634059 213634446 -68559218 + L3 LINE CR1 1157 1576 -1 252 86 0 0 chr1 213635041 213635076 -68558588 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1018 202 98 104 chr1 213635660 213636016 -68557648 + MLT1H LTR MaLR 1 354 -195 287 286 0 0 chr1 213636140 213636217 -68557447 + MIR SINE MIR 60 136 -126 221 333 56 0 chr1 213636286 213636358 -68557306 - MIR SINE MIR -63 145 70 313 261 54 11 chr1 213636539 213636631 -68557033 + L2 LINE L2 3208 3303 -10 1359 25 44 0 chr1 213637688 213637846 -68555818 + L1PA6 LINE L1 5989 6153 -1 192 256 39 77 chr1 213637950 213638028 -68555636 + L2 LINE L2 3137 3211 -61 2106 121 7 0 chr1 213638443 213638732 -68554932 - AluSx SINE Alu -21 291 1 313 282 29 0 chr1 213639494 213639597 -68554067 + L2 LINE L2 3208 3313 0 1688 183 57 0 chr1 213640920 213641199 -68552465 - AluJo SINE Alu -17 295 1 1957 129 4 0 chr1 213642237 213642541 -68551123 + AluSx SINE Alu 5 309 0 322 263 153 8 chr1 213642703 213642821 -68550843 + L2 LINE L2 3173 3307 -6 216 97 0 0 chr1 213642888 213642919 -68550745 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 215 345 62 18 chr1 213643020 213643133 -68550531 + L2 LINE L2 3147 3264 -8 239 293 138 52 chr1 213645239 213645355 -68548309 - L2 LINE L2 0 3272 3147 324 289 22 67 chr1 213645640 213645775 -68547889 + MER91B DNA MER1_type 1 129 -61 538 209 9 19 chr1 213645790 213645895 -68547769 + MER91B DNA MER1_type 87 190 0 2239 120 0 7 chr1 213646096 213646397 -68547267 - AluSx SINE Alu -13 299 1 196 208 21 42 chr1 213646655 213646703 -68546961 - L3b LINE CR1 -246 1337 1291 271 294 39 33 chr1 213646721 213646874 -68546790 + MIR SINE MIR 102 255 -7 207 247 0 49 chr1 213646875 213646956 -68546708 + CT-rich Low_complexity Low_complexity 4 80 0 1314 205 104 101 chr1 213647582 213647998 -68545666 - L1ME1 LINE L1 -5 6161 5741 8411 14 0 0 chr1 213647998 213649320 -68544344 - L1PA3 LINE L1 -1 6154 4833 1314 205 104 101 chr1 213649320 213649478 -68544186 - L1ME1 LINE L1 -425 5741 5585 266 300 12 0 chr1 213650033 213650113 -68543551 + MIR SINE MIR 68 148 -60 217 358 85 40 chr1 213650156 213650357 -68543307 + L2 LINE L2 2969 3178 -94 324 262 19 78 chr1 213650569 213650672 -68542992 + MER5B DNA MER1_type 74 170 -8 180 152 0 0 chr1 213651421 213651454 -68542210 + (TAG)n Simple_repeat Simple_repeat 3 35 0 329 261 122 0 chr1 213651501 213651616 -68542048 + MIR SINE MIR 48 176 -86 707 223 8 0 chr1 213651987 213652117 -68541547 + MER58B DNA MER1_type 210 340 -1 803 329 160 8 chr1 213652778 213653271 -68540393 + L3 LINE CR1 999 1566 -11 2515 77 0 3 chr1 213653409 213653721 -68539943 - AluY SINE Alu 0 311 1 250 290 56 16 chr1 213653917 213654042 -68539622 + MIR SINE MIR 64 192 -58 2166 117 3 16 chr1 213655396 213655703 -68537961 - AluSx SINE Alu -9 303 1 235 143 0 0 chr1 213656059 213656094 -68537570 + MER5B DNA MER1_type 1 35 -143 1840 140 0 19 chr1 213656138 213656409 -68537255 + AluSx SINE Alu 1 266 -46 264 32 0 0 chr1 213656415 213656446 -68537218 + MER5B DNA MER1_type 137 167 -11 329 288 71 57 chr1 213658004 213658216 -68535448 + L1ME4a LINE L1 5442 5656 -2152 207 162 0 0 chr1 213658228 213658265 -68535399 + (TA)n Simple_repeat Simple_repeat 2 38 0 229 192 55 14 chr1 213658272 213658345 -68535319 + L1MCa LINE L1 1996 2071 -4355 296 269 66 50 chr1 213658371 213658553 -68535111 + L1ME4a LINE L1 5744 5928 -193 1082 176 39 0 chr1 213658898 213659080 -68534584 - MER5A DNA MER1_type 0 189 1 2739 134 58 2 chr1 213659083 213659494 -68534170 + MER57B LTR ERV1 1 434 0 4341 131 27 22 chr1 213659494 213660131 -68533533 + MER57B-int LTR ERV1 1 643 -6894 2115 91 50 3 chr1 213660131 213660428 -68533236 - AluY SINE Alu 0 311 1 4341 131 27 22 chr1 213660428 213660462 -68533202 + MER57B-int LTR ERV1 643 675 -6862 3493 139 41 13 chr1 213660456 213661197 -68532467 + MER57B-int LTR ERV1 288 1136 -4810 * 2160 147 67 6 chr1 213661192 213661552 -68532112 + MER57B-int LTR ERV1 1990 2371 -5166 * 5749 172 95 35 chr1 213661551 213663344 -68530320 + MER57B-int LTR ERV1 2042 5205 -2241 13445 87 98 61 chr1 213663347 213665497 -68528167 + MER57B-int LTR ERV1 5307 7535 -2 233 29 29 0 chr1 213665497 213665531 -68528133 + (TTA)n Simple_repeat Simple_repeat 3 37 0 6663 53 5 0 chr1 213665531 213666338 -68527326 - L1PA6 LINE L1 -18 6136 5326 3135 119 9 5 chr1 213666352 213666782 -68526882 + MER57B LTR ERV1 1 432 -2 209 182 0 0 chr1 213667077 213667110 -68526554 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 255 224 0 0 chr1 213667125 213667201 -68526463 + GA-rich Low_complexity Low_complexity 1 76 0 321 335 58 0 chr1 213668350 213668505 -68525159 - MIR3 SINE MIR -3 205 42 693 237 87 22 chr1 213669316 213669562 -68524102 + MIR SINE MIR 8 262 0 457 85 17 0 chr1 213670066 213670125 -68523539 - U7 snRNA snRNA -2 61 2 235 238 44 155 chr1 213670905 213670964 -68522700 - MIR3 SINE MIR -7 201 137 1221 189 18 5 chr1 213670964 213671181 -68522483 - MER58A DNA MER1_type -2 222 3 235 238 44 155 chr1 213671181 213671302 -68522362 - MIR3 SINE MIR -71 137 41 259 341 94 0 chr1 213671372 213671542 -68522122 - L2 LINE L2 0 3272 3087 394 22 0 0 chr1 213675027 213675073 -68518591 - MADE1 DNA Mariner -34 46 1 2315 133 33 28 chr1 213675504 213675866 -68517798 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr1 213676585 213676613 -68517051 + (T)n Simple_repeat Simple_repeat 1 28 0 223 333 132 8 chr1 213677280 213677409 -68516255 + MIR3 SINE MIR 63 207 -1 1599 193 31 10 chr1 213677446 213677736 -68515928 - AluJo SINE Alu -16 296 1 2105 122 7 10 chr1 213678098 213678402 -68515262 - AluSg SINE Alu -7 303 1 524 235 17 0 chr1 213678622 213678737 -68514927 + L2 LINE L2 3154 3270 -2 320 226 0 108 chr1 213678740 213678833 -68514831 + MIR SINE MIR 92 174 -88 202 182 0 0 chr1 213679124 213679157 -68514507 + polypurine Low_complexity Low_complexity 2 34 0 2232 89 7 3 chr1 213679356 213679648 -68514016 + AluSg SINE Alu 1 293 -17 212 294 15 0 chr1 213680027 213680095 -68513569 - MIR SINE MIR -98 164 96 881 198 82 26 chr1 213681084 213681316 -68512348 - MIR SINE MIR -17 245 1 1688 175 21 10 chr1 213682059 213682376 -68511288 + AluJo SINE Alu 1 312 0 10825 53 11 1 chr1 213682493 213684650 -68509014 - L1PA6 LINE L1 0 6154 3983 210 278 14 14 chr1 213685503 213685575 -68508089 + MIR SINE MIR 189 260 -2 453 247 8 86 chr1 213685996 213686190 -68507474 - MIR3 SINE MIR -23 185 6 * 1743 307 120 32 chr1 213686177 213687060 -68506604 - L3 LINE CR1 -5 1572 612 376 335 70 22 chr1 213687688 213687873 -68505791 - MIR SINE MIR -5 257 64 925 177 0 21 chr1 213688011 213688197 -68505467 - L1MD2 LINE L1 -41 6318 6137 2347 88 0 3 chr1 213688237 213688533 -68505131 - AluSq SINE Alu -18 295 1 350 245 21 21 chr1 213688585 213688679 -68504985 - MIR3 SINE MIR -6 202 109 22 35 0 0 chr1 213688762 213688791 -68504873 + AT_rich Low_complexity Low_complexity 1 29 0 708 304 123 93 chr1 213689302 213689587 -68504077 + L3 LINE CR1 343 618 -959 252 59 0 0 chr1 213689587 213689621 -68504043 + (TG)n Simple_repeat Simple_repeat 2 35 0 708 304 123 93 chr1 213689621 213690451 -68503213 + L3 LINE CR1 618 1491 -86 306 318 75 9 chr1 213690555 213690662 -68503002 + L2 LINE L2 3134 3247 -25 204 364 13 0 chr1 213690696 213690773 -68502891 + L3 LINE CR1 1495 1572 -5 1138 145 16 5 chr1 213690870 213691056 -68502608 - MER5A DNA MER1_type 0 189 2 389 280 166 6 chr1 213691076 213691108 -68502556 - MER5A DNA MER1_type -1 188 162 2340 74 3 35 chr1 213691108 213691419 -68502245 + AluSq SINE Alu 1 301 -12 389 280 166 6 chr1 213691419 213691543 -68502121 - MER5A DNA MER1_type -27 162 7 199 167 39 103 chr1 213691867 213691945 -68501719 - L3b LINE CR1 -224 1359 1287 249 287 61 77 chr1 213693035 213693216 -68500448 - MIR SINE MIR -1 261 84 765 177 31 8 chr1 213694115 213694245 -68499419 + FLAM_C SINE Alu 1 133 -10 41157 30 21 1 chr1 213694253 213700278 -68493386 + L1HS LINE L1 7 6155 0 23 0 0 0 chr1 213700278 213700301 -68493363 + AT_rich Low_complexity Low_complexity 1 23 0 313 238 88 12 chr1 213701050 213701130 -68492534 + L2 LINE L2 3145 3230 -42 343 320 109 0 chr1 213701130 213701286 -68492378 + MIR3 SINE MIR 34 206 -2 185 160 0 20 chr1 213701407 213701457 -68492207 + CT-rich Low_complexity Low_complexity 2 50 0 314 156 31 0 chr1 213701475 213701539 -68492125 + Charlie5 DNA MER1_type 2519 2584 -28 282 235 0 0 chr1 213702329 213702410 -68491254 + (CA)n Simple_repeat Simple_repeat 2 82 0 1273 171 96 0 chr1 213702563 213702844 -68490820 - MER33 DNA MER1_type -15 309 2 228 350 96 23 chr1 213703957 213704134 -68489530 - L3b LINE CR1 -286 1297 1108 722 242 10 111 chr1 213704178 213704476 -68489188 + L2 LINE L2 3046 3313 0 214 362 0 21 chr1 213704970 213705064 -68488600 + L2 LINE L2 3180 3271 -1 207 349 24 0 chr1 213705249 213705332 -68488332 - L2 LINE L2 0 3272 3188 230 301 82 0 chr1 213705382 213705455 -68488209 + L2 LINE L2 3189 3267 -5 27 29 0 0 chr1 213706088 213706122 -68487542 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr1 213706390 213706412 -68487252 + AT_rich Low_complexity Low_complexity 1 22 0 333 279 52 49 chr1 213706429 213706737 -68486927 + L1MC4a LINE L1 4878 5186 -960 712 314 62 16 chr1 213707014 213707574 -68486090 + L1MC4a LINE L1 5318 5903 -1905 224 289 0 0 chr1 213707776 213707852 -68485812 + (TA)n Simple_repeat Simple_repeat 2 77 0 343 226 98 29 chr1 213708014 213708116 -68485548 + MIR3 SINE MIR 82 190 -18 554 340 87 5 chr1 213709198 213709404 -68484260 - MIR SINE MIR -11 251 29 824 181 102 0 chr1 213709668 213709845 -68483819 - MER58A DNA MER1_type 0 224 30 403 314 57 0 chr1 213709986 213710126 -68483538 + L2 LINE L2 3165 3312 -1 875 175 16 10 chr1 213710168 213710478 -68483186 + GA-rich Low_complexity Low_complexity 1 311 0 1027 172 12 0 chr1 213710948 213711117 -68482547 - FAM SINE Alu -4 171 1 1195 120 10 10 chr1 213711472 213711672 -68481992 - L1PA13 LINE L1 0 6163 5964 500 264 163 6 chr1 213712216 213712394 -68481270 - L3 LINE CR1 -257 1320 1115 403 297 70 24 chr1 213712402 213712619 -68481045 + MIR SINE MIR 14 236 -26 275 200 109 0 chr1 213712860 213712915 -68480749 + L2 LINE L2 3237 3297 -16 2103 167 91 90 chr1 213713312 213714250 -68479414 + L1PA16 LINE L1 5225 6162 -4 214 381 82 14 chr1 213714681 213714828 -68478836 - L2 LINE L2 -1 3271 3115 236 272 74 62 chr1 213714920 213715001 -68478663 - L2 LINE L2 -198 3074 2993 204 67 0 0 chr1 213715777 213715807 -68477857 + (TC)n Simple_repeat Simple_repeat 2 31 0 267 93 0 0 chr1 213715807 213715850 -68477814 + (CA)n Simple_repeat Simple_repeat 1 43 0 210 225 113 42 chr1 213716428 213716499 -68477165 + L2 LINE L2 3213 3288 -25 620 223 149 34 chr1 213717448 213717621 -68476043 + MIR SINE MIR 6 198 -64 507 162 0 61 chr1 213717621 213717720 -68475944 + MER5A DNA MER1_type 1 93 -96 2207 109 3 0 chr1 213718184 213718478 -68475186 - AluSx SINE Alu -17 295 1 335 246 56 71 chr1 213718654 213718803 -68474861 - MER5A DNA MER1_type -36 153 1 1996 165 125 42 chr1 213719512 213719701 -68473963 + MLT1C LTR MaLR 1 173 -294 2352 123 0 0 chr1 213719701 213720010 -68473654 + AluSq SINE Alu 1 309 -4 1996 165 125 42 chr1 213720010 213720251 -68473413 + MLT1C LTR MaLR 173 467 0 1076 274 103 50 chr1 213720453 213721060 -68472604 + L1MEd LINE L1 420 993 -5317 2172 123 0 10 chr1 213721060 213721362 -68472302 + AluSq SINE Alu 1 299 -14 1076 274 103 50 chr1 213721362 213721922 -68471742 + L1MEd LINE L1 993 1668 -4642 1788 226 18 62 chr1 213721963 213722530 -68471134 + MER34 LTR ERV1 1 542 0 469 308 39 81 chr1 213722558 213722990 -68470674 + L1MEd LINE L1 1780 2193 -4117 230 300 36 0 chr1 213723092 213723202 -68470462 + L1MEd LINE L1 2337 2450 -3679 276 250 0 0 chr1 213723203 213723283 -68470381 + (TA)n Simple_repeat Simple_repeat 1 80 0 22 0 0 0 chr1 213723418 213723440 -68470224 + AT_rich Low_complexity Low_complexity 1 22 0 1245 274 91 39 chr1 213723444 213723858 -68469806 + L1MEd LINE L1 2576 2967 -3162 1983 232 131 6 chr1 213723858 213724362 -68469302 - MLT1F1 LTR MaLR 0 567 1 1245 274 91 39 chr1 213724362 213724528 -68469136 + L1MEd LINE L1 2967 3123 -3006 2364 106 3 0 chr1 213724528 213724831 -68468833 + AluSp SINE Alu 1 304 -9 1245 274 91 39 chr1 213724831 213725052 -68468612 + L1MEd LINE L1 3123 3331 -2798 1889 132 45 10 chr1 213725052 213725340 -68468324 + AluSx SINE Alu 1 298 -14 1245 274 91 39 chr1 213725340 213725647 -68468017 + L1MEd LINE L1 3331 3744 -2385 587 269 50 8 chr1 213725685 213725927 -68467737 + L1ME3A LINE L1 5696 5947 -223 214 267 267 19 chr1 213727448 213727553 -68466111 + MIR3 SINE MIR 66 196 -12 566 355 99 0 chr1 213728877 213729249 -68464415 + L2 LINE L2 2569 2977 -337 234 0 0 0 chr1 213729738 213729764 -68463900 + (CA)n Simple_repeat Simple_repeat 1 26 0 4132 67 28 0 chr1 213730124 213730662 -68463002 - MER41A LTR ERV1 -1 553 1 351 326 108 19 chr1 213731823 213732081 -68461583 + L2 LINE L2 3011 3291 -22 687 269 6 11 chr1 213732282 213732464 -68461200 + MER5A DNA MER1_type 9 189 0 2285 110 0 10 chr1 213732852 213733161 -68460503 - AluSg SINE Alu -4 306 1 2021 126 39 0 chr1 213733688 213733974 -68459690 - AluSx SINE Alu -15 297 1 979 120 0 0 chr1 213733978 213734111 -68459553 - FLAM_C SINE Alu -10 133 1 344 322 80 44 chr1 213734325 213734688 -68458976 + L2 LINE L2 1832 2207 -1107 305 250 83 28 chr1 213734990 213735098 -68458566 + L2 LINE L2 3154 3267 -5 2192 90 0 0 chr1 213735491 213735759 -68457905 + AluSg SINE Alu 15 282 -28 195 42 0 0 chr1 213735759 213735783 -68457881 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1092 284 35 11 chr1 213735979 213736356 -68457308 + MLT1J LTR MaLR 16 401 -110 1574 165 28 84 chr1 213736525 213736846 -68456818 + AluJb SINE Alu 1 303 -9 354 341 23 28 chr1 213737858 213738034 -68455630 - MIR3 SINE MIR -7 201 27 1132 167 28 14 chr1 213738468 213738684 -68454980 - MER20 DNA MER1_type 0 219 1 220 322 41 41 chr1 213738992 213739113 -68454551 - L2 LINE L2 -2 3311 3191 295 254 91 27 chr1 213739862 213739972 -68453692 + HAL1 LINE L1 607 723 -1784 556 290 45 25 chr1 213740116 213740316 -68453348 - MIR SINE MIR -26 236 33 431 317 50 6 chr1 213740839 213741019 -68452645 - MIR SINE MIR -26 236 49 2152 134 0 0 chr1 213741410 213741708 -68451956 - AluSx SINE Alu -14 298 1 250 363 95 22 chr1 213741834 213742013 -68451651 - MIR3 SINE MIR -14 194 3 353 305 53 0 chr1 213742445 213742540 -68451124 + L2 LINE L2 3209 3308 -5 294 137 0 0 chr1 213742580 213742631 -68451033 - L1P LINE L1 -1353 4793 4743 412 233 120 9 chr1 213743943 213744067 -68449597 + MER5A DNA MER1_type 12 163 -26 203 273 15 0 chr1 213744125 213744191 -68449473 + L2 LINE L2 1944 2010 -1304 4899 169 32 4 chr1 213744203 213745913 -68447751 - L1PB4 LINE L1 0 6156 4405 369 0 0 0 chr1 213745913 213745954 -68447710 + (TG)n Simple_repeat Simple_repeat 1 41 0 4899 169 32 4 chr1 213745954 213745998 -68447666 - L1PB4 LINE L1 -1751 4405 4364 2218 282 145 7 chr1 213745998 213746968 -68446696 + L2 LINE L2 1997 3149 -164 2249 109 0 3 chr1 213746968 213747261 -68446403 + AluSx SINE Alu 1 292 -20 2218 282 145 7 chr1 213747261 213747441 -68446223 + L2 LINE L2 3149 3303 -10 2397 101 3 0 chr1 213748443 213748751 -68444913 - AluSp SINE Alu -4 309 1 335 295 27 60 chr1 213748904 213749053 -68444611 + MIR3 SINE MIR 15 158 -50 778 219 6 19 chr1 213750723 213750883 -68442781 + FRAM SINE Alu 1 158 -18 713 268 152 9 chr1 213750896 213751122 -68442542 + MIR SINE MIR 15 262 0 587 240 57 29 chr1 213751422 213751597 -68442067 + MIR SINE MIR 80 259 -3 2525 117 28 48 chr1 213752009 213752369 -68441295 + MSTB LTR MaLR 1 352 -74 1940 131 20 10 chr1 213752369 213752537 -68441127 - AluJb SINE Alu -8 304 130 2130 126 3 0 chr1 213752537 213752831 -68440833 - AluSq SINE Alu -18 295 1 1940 131 20 10 chr1 213752831 213752959 -68440705 - AluJb SINE Alu -182 130 5 2525 117 28 48 chr1 213752959 213753033 -68440631 + MSTB LTR MaLR 352 426 0 295 301 107 10 chr1 213753130 213753308 -68440356 + L2 LINE L2 2439 2639 -675 2163 99 35 0 chr1 213753308 213753592 -68440072 + AluSx SINE Alu 1 294 -18 295 301 107 10 chr1 213753592 213753609 -68440055 + L2 LINE L2 2639 2653 -661 206 71 0 0 chr1 213754428 213754456 -68439208 + L2 LINE L2 3244 3271 -1 1764 136 7 71 chr1 213754591 213754901 -68438763 + AluJo SINE Alu 1 290 -22 291 54 0 0 chr1 213754904 213754941 -68438723 + (CA)n Simple_repeat Simple_repeat 2 38 0 2295 89 3 0 chr1 213754984 213755295 -68438369 + AluSp SINE Alu 1 312 0 25 31 0 0 chr1 213756079 213756111 -68437553 + AT_rich Low_complexity Low_complexity 1 32 0 265 256 214 17 chr1 213758979 213759096 -68434568 - MIR3 SINE MIR -2 206 67 1525 205 151 7 chr1 213759296 213759698 -68433966 + MLT2B1 LTR ERVL 3 476 -44 261 0 0 0 chr1 213759698 213759727 -68433937 + (CA)n Simple_repeat Simple_repeat 2 30 0 1525 205 151 7 chr1 213759727 213759767 -68433897 + MLT2B1 LTR ERVL 476 509 -11 556 303 107 15 chr1 213760810 213761295 -68432369 - L1ME3A LINE L1 -321 5849 5315 445 288 86 29 chr1 213761435 213761574 -68432090 - MER91A DNA MER1_type -3 193 47 * 681 144 10 0 chr1 213761566 213761670 -68431994 + MER5A DNA MER1_type 85 189 0 718 270 43 61 chr1 213761671 213761773 -68431891 - L1MC/D LINE L1 -2039 5769 5667 212 0 36 0 chr1 213761773 213761801 -68431863 + (TA)n Simple_repeat Simple_repeat 2 30 0 718 270 43 61 chr1 213761801 213762024 -68431640 - L1MC/D LINE L1 -2141 5667 5450 225 280 40 0 chr1 213762830 213762880 -68430784 + MIR SINE MIR 63 114 -148 593 240 0 0 chr1 213763054 213763183 -68430481 + MER3 DNA MER1_type 2 130 -79 298 298 0 0 chr1 213763224 213763328 -68430336 - L1MA9 LINE L1 -39 6273 6170 2338 95 0 7 chr1 213763353 213763657 -68430007 - AluY SINE Alu -9 302 1 283 189 0 0 chr1 213763658 213763711 -68429953 + MER3 DNA MER1_type 152 204 -5 311 287 15 45 chr1 213763771 213763938 -68429726 + MER5A DNA MER1_type 1 162 -16 22 0 0 0 chr1 213765070 213765092 -68428572 + AT_rich Low_complexity Low_complexity 1 22 0 32 67 0 0 chr1 213765291 213765351 -68428313 + AT_rich Low_complexity Low_complexity 1 60 0 2308 56 20 36 chr1 213765838 213766144 -68427520 - AluY SINE Alu -10 301 1 259 325 234 32 chr1 213766625 213767056 -68426608 + L2 LINE L2 2224 2741 -573 2246 93 49 36 chr1 213768895 213769282 -68424382 - L1MA5 LINE L1 -9 6291 5900 2261 89 17 0 chr1 213769490 213769783 -68423881 + AluSx SINE Alu 4 301 -11 1256 94 0 0 chr1 213769783 213769943 -68423721 + AluSp SINE Alu 134 293 -20 346 215 21 32 chr1 213770066 213770159 -68423505 + L1ME4a LINE L1 5961 6052 -69 2576 99 20 0 chr1 213770738 213771131 -68422533 - L1MA3 LINE L1 0 6305 5905 10806 165 30 8 chr1 213771139 213771225 -68422439 - L1 LINE L1 -748 6817 6734 2065 137 0 19 chr1 213771225 213771540 -68422124 - AluSx SINE Alu 0 312 4 10806 165 30 8 chr1 213771540 213773679 -68419985 - L1 LINE L1 -831 6734 4545 19238 116 114 14 chr1 213773690 213774861 -68418803 - L1 LINE L1 -3647 3918 2866 2157 135 3 0 chr1 213774861 213775172 -68418492 - AluSx SINE Alu 0 312 1 19238 116 114 14 chr1 213775172 213777547 -68416117 - L1 LINE L1 -4699 2866 17 418 231 23 0 chr1 213777861 213777991 -68415673 - L1ME1 LINE L1 -6 6160 6028 1779 247 123 5 chr1 213779595 213779622 -68414042 + HsTC2c DNA Tc2 2 24 -1874 2408 99 0 0 chr1 213779622 213779934 -68413730 - AluSx SINE Alu 0 312 1 1779 247 123 5 chr1 213779934 213780541 -68413123 + HsTC2c DNA Tc2 24 711 -18 3668 113 6 17 chr1 213780751 213781283 -68412381 - MER1A DNA MER1_type -1 526 1 210 284 0 27 chr1 213782112 213782186 -68411478 - MIR SINE MIR -25 237 166 2901 109 26 0 chr1 213782684 213783114 -68410550 + L1PA16 LINE L1 5717 6157 -9 1792 156 0 39 chr1 213783116 213783257 -68410407 + AluJb SINE Alu 1 146 -166 2100 99 7 0 chr1 213783257 213783553 -68410111 + AluSg SINE Alu 9 306 0 1792 156 0 39 chr1 213783553 213783717 -68409947 + AluJb SINE Alu 146 295 -17 1615 153 8 19 chr1 213783886 213784147 -68409517 + AluJb SINE Alu 30 287 -25 22 0 0 0 chr1 213784241 213784263 -68409401 + AT_rich Low_complexity Low_complexity 1 22 0 201 324 40 0 chr1 213784588 213784662 -68409002 - MIR3 SINE MIR -7 201 125 577 251 38 46 chr1 213785067 213785306 -68408358 - MLT1D LTR MaLR -6 499 263 231 114 0 0 chr1 213785322 213785357 -68408307 + (TG)n Simple_repeat Simple_repeat 2 36 0 648 189 160 6 chr1 213785362 213785531 -68408133 - MLT1D LTR MaLR -309 196 2 1007 191 12 0 chr1 213785787 213785960 -68407704 - FAM SINE Alu 0 175 1 273 301 0 48 chr1 213786130 213786213 -68407451 - L2 LINE L2 -1 3271 3193 534 244 36 56 chr1 213786308 213786517 -68407147 + MIR SINE MIR 3 211 -51 226 373 60 39 chr1 213786786 213787019 -68406645 - L2 LINE L2 -633 2681 2444 238 216 0 41 chr1 213787058 213787155 -68406509 + CT-rich Low_complexity Low_complexity 2 94 0 233 224 60 45 chr1 213787717 213787784 -68405880 - L2 LINE L2 0 3313 3246 234 353 59 0 chr1 213788083 213788168 -68405496 + L2 LINE L2 2996 3085 -187 618 307 74 20 chr1 213788207 213788451 -68405213 + MIR SINE MIR 5 261 -1 198 279 88 15 chr1 213788472 213788540 -68405124 + L2 LINE L2 3138 3210 -62 652 13 0 0 chr1 213789868 213789945 -68403719 - L1P LINE L1 -1904 4242 4166 2022 155 0 10 chr1 213790002 213790306 -68403358 + AluJb SINE Alu 1 301 -11 2552 46 0 3 chr1 213791047 213791353 -68402311 + AluY SINE Alu 2 306 -5 39 0 0 0 chr1 213792341 213792380 -68401284 + AT_rich Low_complexity Low_complexity 1 39 0 1974 93 4 0 chr1 213795463 213795732 -68397932 + AluSp SINE Alu 38 307 0 1078 207 58 0 chr1 213795920 213796195 -68397469 + L1MB4 LINE L1 5886 6176 -4 435 256 185 20 chr1 213796380 213796575 -68397089 + L3 LINE CR1 1328 1554 -23 744 298 33 21 chr1 213797149 213797575 -68396089 + L1ME4a LINE L1 5638 6068 -53 24 0 0 0 chr1 213797599 213797623 -68396041 + AT_rich Low_complexity Low_complexity 1 24 0 2060 58 0 19 chr1 213797737 213798018 -68395646 + AluY SINE Alu 32 307 0 332 237 252 0 chr1 213798055 213798194 -68395470 - MIR SINE MIR 0 262 89 601 228 83 44 chr1 213799789 213799969 -68393695 + MIR SINE MIR 75 261 -1 2079 251 83 6 chr1 213799977 213800665 -68392999 + L2 LINE L2 2283 3237 -76 1850 164 13 13 chr1 213800753 213801058 -68392606 + AluJo SINE Alu 1 305 -7 1560 105 22 18 chr1 213801098 213801327 -68392337 + MER30 DNA MER1_type 1 230 0 284 298 137 8 chr1 213801416 213801540 -68392124 - MIR SINE MIR -122 140 1 630 313 66 4 chr1 213801727 213801954 -68391710 - MIR SINE MIR -1 261 21 384 253 132 52 chr1 213803391 213803565 -68390099 + MIR3 SINE MIR 21 208 0 919 178 32 95 chr1 213803572 213803921 -68389743 - MER33 DNA MER1_type -4 320 1 555 56 0 0 chr1 213803929 213804000 -68389664 + (TTTCC)n Simple_repeat Simple_repeat 3 73 0 1933 82 86 4 chr1 213804000 213804269 -68389395 - AluSc SINE Alu -16 293 3 431 247 62 27 chr1 213804487 213804633 -68389031 + MLT1J2 LTR MaLR 132 282 -168 1593 166 21 18 chr1 213804651 213804935 -68388729 - AluJo SINE Alu 0 312 28 1871 187 68 2 chr1 213804983 213805426 -68388238 + Charlie4a DNA MER1_type 16 487 -21 227 277 129 0 chr1 213805484 213805585 -68388079 + MLT1J2 LTR MaLR 334 447 -3 530 238 0 8 chr1 213805713 213805835 -68387829 + MER63A DNA MER1_type 90 210 0 1870 123 0 29 chr1 213806719 213806995 -68386669 + AluSx SINE Alu 1 268 -44 342 0 0 0 chr1 213806999 213807037 -68386627 + (CA)n Simple_repeat Simple_repeat 1 38 0 287 139 0 0 chr1 213807262 213807305 -68386359 + MIR SINE MIR 220 262 0 1377 237 72 36 chr1 213807997 213808500 -68385164 - L1MEc LINE L1 -5377 1019 499 627 236 24 19 chr1 213808501 213808709 -68384955 - HAL1 LINE L1 -1162 1345 1137 431 259 35 20 chr1 213808894 213809091 -68384573 - HAL1 LINE L1 -1371 1136 937 420 222 19 105 chr1 213809091 213809253 -68384411 - L2 LINE L2 -2 3311 3164 1982 113 7 14 chr1 213809258 213809564 -68384100 - AluSx SINE Alu 0 304 1 2584 51 0 3 chr1 213809692 213810003 -68383661 - AluY SINE Alu -1 310 1 1233 230 127 34 chr1 213810181 213810655 -68383009 + MLT1L LTR MaLR 14 531 -84 1544 239 43 45 chr1 213811073 213811654 -68382010 + L1MC5 LINE L1 6614 7193 -768 669 298 103 38 chr1 213811858 213812704 -68380960 + L1M4 LINE L1 3917 4828 -1318 746 291 34 17 chr1 213813062 213813299 -68380365 + MIR SINE MIR 8 248 -14 298 149 0 75 chr1 213813542 213813609 -68380055 + L1MC5 LINE L1 7178 7239 -722 2487 63 0 0 chr1 213813652 213813953 -68379711 + AluY SINE Alu 1 301 -10 851 111 111 7 chr1 213813962 213814115 -68379549 - L1PA12 LINE L1 -309 5854 5686 2251 108 0 18 chr1 213814115 213814458 -68379206 + L1PA12 LINE L1 5832 6168 0 434 244 133 11 chr1 213814468 213814648 -68379016 + L1MC5 LINE L1 7314 7515 -446 500 238 148 55 chr1 213814786 213815201 -68378463 + MLT1H LTR MaLR 46 545 -4 255 286 13 78 chr1 213815202 213815356 -68378308 + L1ME3 LINE L1 5972 6115 -47 258 105 0 0 chr1 213815816 213815854 -68377810 + (TC)n Simple_repeat Simple_repeat 1 38 0 249 108 0 0 chr1 213815854 213815891 -68377773 + (TG)n Simple_repeat Simple_repeat 2 38 0 2807 13 0 0 chr1 213816556 213816867 -68376797 + AluYb8 SINE Alu 1 311 -7 1359 241 100 34 chr1 213817356 213817429 -68376235 - MLT1J LTR MaLR 0 511 444 207 0 0 0 chr1 213817429 213817452 -68376212 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1359 241 100 34 chr1 213817452 213817850 -68375814 - MLT1J LTR MaLR -67 444 9 522 269 45 106 chr1 213817901 213818327 -68375337 - MLT1L LTR MaLR -116 499 49 875 137 0 43 chr1 213818327 213818466 -68375198 - FLAM_C SINE Alu 0 133 1 522 269 45 106 chr1 213818466 213818518 -68375146 - MLT1L LTR MaLR -566 49 53 2036 131 0 13 chr1 213818518 213818824 -68374840 + AluJb SINE Alu 1 302 -10 522 269 45 106 chr1 213818824 213818875 -68374789 - MLT1L LTR MaLR -561 54 1 1887 148 33 3 chr1 213819638 213819941 -68373723 + AluJb SINE Alu 1 312 0 2205 115 0 0 chr1 213820024 213820312 -68373352 + AluSc SINE Alu 1 288 -21 416 295 127 83 chr1 213822621 213823282 -68370382 - L1M2 LINE L1 -5598 1251 562 700 202 6 55 chr1 213823424 213823520 -68370144 + MER5A DNA MER1_type 13 97 -92 183 42 0 0 chr1 213823520 213823544 -68370120 + (CA)n Simple_repeat Simple_repeat 2 25 0 700 202 6 55 chr1 213823544 213823630 -68370034 + MER5A DNA MER1_type 97 186 -3 490 250 96 6 chr1 213824119 213824275 -68369389 + L2 LINE L2 2478 2647 -667 901 279 136 26 chr1 213824312 213824695 -68368969 + L2 LINE L2 2823 3247 -66 456 276 0 29 chr1 213824753 213824858 -68368806 + L2 LINE L2 3212 3313 0 5422 112 55 11 chr1 213825213 213825725 -68367939 + L1PA15 LINE L1 4486 4974 -1191 2304 91 3 0 chr1 213825725 213826021 -68367643 - AluSc SINE Alu -12 297 1 5422 112 55 11 chr1 213826021 213826553 -68367111 + L1PA15 LINE L1 4974 5481 -684 2698 26 0 0 chr1 213826553 213826856 -68366808 + AluY SINE Alu 5 307 -4 5422 112 55 11 chr1 213826856 213827360 -68366304 + L1PA15 LINE L1 5481 6035 -130 1897 174 0 10 chr1 213827360 213827670 -68365994 + AluJb SINE Alu 1 307 -5 5422 112 55 11 chr1 213827670 213827801 -68365863 + L1PA15 LINE L1 6035 6159 -6 480 310 62 13 chr1 213827834 213828055 -68365609 + MIR SINE MIR 16 248 -14 255 94 94 0 chr1 213828492 213828545 -68365119 - L1MB7 LINE L1 0 6184 6127 315 0 0 0 chr1 213828591 213828626 -68365038 + (TG)n Simple_repeat Simple_repeat 2 36 0 547 216 185 0 chr1 213828827 213828989 -68364675 - MIR SINE MIR -56 206 15 406 253 80 96 chr1 213829016 213829380 -68364284 - L1ME4a LINE L1 -2 6119 5762 382 272 87 60 chr1 213829364 213829450 -68364214 - L1ME4a LINE L1 -615 5555 5473 * 207 0 0 0 chr1 213829450 213829473 -68364191 + (TTA)n Simple_repeat Simple_repeat 1 23 0 382 272 87 60 chr1 213829473 213829710 -68363954 - L1ME4a LINE L1 -697 5473 5226 25 0 0 0 chr1 213829956 213829981 -68363683 + AT_rich Low_complexity Low_complexity 1 25 0 320 380 8 0 chr1 213830035 213830164 -68363500 + MIR SINE MIR 18 147 -115 2137 134 10 0 chr1 213831474 213831773 -68361891 - AluSx SINE Alu -10 302 1 606 193 67 13 chr1 213831839 213831989 -68361675 - MER97c DNA MER1_type? -911 179 22 273 226 49 49 chr1 213832559 213832661 -68361003 + MLT1K LTR MaLR 485 586 -2 252 289 29 48 chr1 213833452 213833556 -68360108 + L2 LINE L2 3171 3272 0 261 359 11 11 chr1 213833638 213833730 -68359934 - MIR3 SINE MIR -25 183 92 1468 325 108 30 chr1 213833751 213834950 -68358714 - L2 LINE L2 -6 3307 2016 223 328 65 48 chr1 213835101 213835287 -68358377 - L2 LINE L2 -1715 1599 1411 555 277 24 0 chr1 213835595 213835761 -68357903 + MLT1L LTR MaLR 444 613 -2 373 301 63 35 chr1 213836226 213836369 -68357295 + L2 LINE L2 3122 3268 -4 1633 184 34 6 chr1 213837098 213837425 -68356239 + MLT2C1 LTR ERVL 1 336 -61 32 26 0 0 chr1 213837640 213837679 -68355985 + AT_rich Low_complexity Low_complexity 1 39 0 325 101 22 34 chr1 213837704 213837793 -68355871 + (TTATA)n Simple_repeat Simple_repeat 1 88 0 237 182 0 0 chr1 213837834 213837878 -68355786 + MLT2C1 LTR ERVL 354 397 0 2180 95 0 54 chr1 213837936 213838251 -68355413 + AluSx SINE Alu 3 300 -12 1865 183 11 16 chr1 213839020 213839387 -68354277 + MLT1A1 LTR MaLR 1 365 0 371 342 137 22 chr1 213839679 213840080 -68353584 - L2 LINE L2 -800 2514 2068 1895 131 18 77 chr1 213840113 213840316 -68353348 - L1MB4 LINE L1 -2 6178 5965 1760 152 0 36 chr1 213840316 213840619 -68353045 - AluJb SINE Alu -20 292 1 1895 131 18 77 chr1 213840619 213840633 -68353031 - L1MB4 LINE L1 -215 5965 5952 1716 154 10 24 chr1 213840633 213840787 -68352877 - AluSx SINE Alu -23 289 139 233 0 62 0 chr1 213840787 213840819 -68352845 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1716 154 10 24 chr1 213840819 213840957 -68352707 - AluSx SINE Alu -173 139 1 1895 131 18 77 chr1 213840957 213841128 -68352536 - L1MB4 LINE L1 -228 5952 5812 1037 231 0 7 chr1 213842125 213842398 -68351266 - L1M4 LINE L1 -3349 3033 2763 * 1616 159 4 4 chr1 213842399 213842651 -68351013 - AluJb SINE Alu -14 298 47 8037 141 54 37 chr1 213842651 213844056 -68349608 - L1M4 LINE L1 -4756 1628 189 2103 112 3 3 chr1 213844056 213844360 -68349304 + AluSq SINE Alu 1 304 -9 8037 141 54 37 chr1 213844360 213844535 -68349129 - L1M4 LINE L1 -6195 189 18 361 280 62 67 chr1 213845411 213845636 -68348028 - MIR SINE MIR -21 241 18 2911 162 54 51 chr1 213846482 213847044 -68346620 + L1PA15 LINE L1 5453 6012 -153 1786 168 29 0 chr1 213847044 213847324 -68346340 + AluJb SINE Alu 1 288 -24 792 85 31 0 chr1 213847324 213847454 -68346210 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 2911 162 54 51 chr1 213847454 213847581 -68346083 + L1PA15 LINE L1 6011 6144 -21 788 179 11 38 chr1 213847690 213847874 -68345790 - L1MA9 LINE L1 -4 6308 6130 334 321 155 11 chr1 213848026 213848213 -68345451 + MIR SINE MIR 21 234 -28 5853 89 0 8 chr1 213848464 213849322 -68344342 - L1PA13 LINE L1 0 6163 5313 183 80 0 0 chr1 213849920 213849945 -68343719 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 41076 33 22 1 chr1 213850165 213856190 -68337474 + L1PA3 LINE L1 2 6155 0 270 272 12 12 chr1 213856527 213856608 -68337056 + MLT1J LTR MaLR 108 188 -323 367 214 20 20 chr1 213856711 213856809 -68336855 + MLT1J2 LTR MaLR 344 441 -9 366 273 120 1 chr1 213856979 213857113 -68336551 - MIR SINE MIR -67 141 4 208 325 32 49 chr1 213858368 213858491 -68335173 + L2 LINE L2 3177 3297 -16 1906 126 4 22 chr1 213858636 213858913 -68334751 - AluJb SINE Alu -29 283 12 225 257 40 40 chr1 213859432 213859533 -68334131 + L2 LINE L2 1167 1267 -2047 183 262 159 28 chr1 213859590 213859697 -68333967 - L2 LINE L2 -846 2468 2348 659 263 173 26 chr1 213859916 213860228 -68333436 - L2 LINE L2 -10 3303 2946 2114 133 0 7 chr1 213860520 213860821 -68332843 - AluSx SINE Alu -13 299 1 1419 177 0 11 chr1 213861172 213861443 -68332221 - L1MB4 LINE L1 0 6180 5913 2001 117 17 3 chr1 213861446 213861737 -68331927 + AluSc SINE Alu 1 295 -14 496 145 60 0 chr1 213861748 213861831 -68331833 + AluJ/FLAM SINE Alu 3 90 -222 1659 147 18 49 chr1 213861831 213862379 -68331285 - L1MB4 LINE L1 -599 5581 5040 879 126 0 0 chr1 213862402 213862521 -68331143 - AluSq/x SINE Alu -194 119 1 1955 110 7 4 chr1 213863207 213863479 -68330185 - AluSx SINE Alu -39 273 1 26 30 0 0 chr1 213863550 213863583 -68330081 + AT_rich Low_complexity Low_complexity 1 33 0 786 134 17 0 chr1 213863583 213863702 -68329962 - 5S rRNA rRNA 0 121 1 244 348 86 38 chr1 213863709 213864106 -68329558 + L2 LINE L2 1989 2404 -910 248 96 135 0 chr1 213864627 213864679 -68328985 + LTR48 LTR ERV1 679 737 -50 2296 95 3 0 chr1 213864876 213865171 -68328493 + AluSx SINE Alu 1 296 -16 210 235 88 15 chr1 213865254 213865322 -68328342 + L2 LINE L2 2428 2500 -814 1379 162 8 27 chr1 213865400 213865659 -68328005 - THE1B LTR MaLR -110 254 1 2174 236 61 48 chr1 213865884 213866588 -68327076 + MER72 LTR ERV1 1 713 -9 1394 210 58 159 chr1 213866674 213866933 -68326731 + L2 LINE L2 1444 1728 -1586 2294 118 0 0 chr1 213866933 213867238 -68326426 + AluSx SINE Alu 1 305 -7 1394 210 58 159 chr1 213867238 213867335 -68326329 + L2 LINE L2 1728 1833 -1481 2384 111 0 0 chr1 213867335 213867642 -68326022 + AluSx SINE Alu 1 307 -5 1394 210 58 159 chr1 213867642 213868064 -68325600 + L2 LINE L2 1833 2144 -1170 553 243 0 40 chr1 213868171 213868319 -68325345 + L2 LINE L2 3172 3313 0 400 291 117 9 chr1 213868605 213868818 -68324846 - Charlie8 DNA MER1_type -2178 239 4 1499 224 16 5 chr1 213869569 213869993 -68323671 + L1M4 LINE L1 4777 5205 -941 9094 149 89 18 chr1 213869997 213870777 -68322887 + L1MC1 LINE L1 27 750 -5676 847 173 0 0 chr1 213870777 213870910 -68322754 + FLAM_A SINE Alu 1 133 0 9094 149 89 18 chr1 213870910 213870933 -68322731 + L1MC1 LINE L1 750 770 -5656 1754 198 82 0 chr1 213870933 213871297 -68322367 - MSTD LTR MaLR -2 394 1 9094 149 89 18 chr1 213871297 213872429 -68321235 + L1MC1 LINE L1 770 2102 -4324 317 250 18 0 chr1 213872421 213872533 -68321131 - L1MCa LINE L1 -3973 2634 2521 * 270 102 0 0 chr1 213872533 213872582 -68321082 - AluSc SINE Alu 0 299 251 1085 138 26 9 chr1 213872583 213872818 -68320846 - L1MCa LINE L1 -3935 2491 2253 1227 129 0 0 chr1 213872818 213872988 -68320676 - AluSg/x SINE Alu -9 301 132 2143 106 0 10 chr1 213872988 213873291 -68320373 - AluY SINE Alu -11 300 1 2145 102 42 0 chr1 213873302 213873586 -68320078 - AluSc SINE Alu -13 296 1 757 101 8 0 chr1 213873586 213873705 -68319959 - L1MCa LINE L1 -4185 2241 2122 1544 193 23 43 chr1 213873707 213873907 -68319757 + L1MC1 LINE L1 2861 3064 -3362 2395 63 0 60 chr1 213873907 213874225 -68319439 - AluY SINE Alu -12 299 1 1544 193 23 43 chr1 213874225 213874464 -68319200 + L1MC1 LINE L1 3064 3291 -3135 649 160 10 0 chr1 213874491 213874591 -68319073 + FLAM_C SINE Alu 3 103 -40 971 103 52 0 chr1 213874628 213874764 -68318900 - AluSq/x SINE Alu -165 147 5 2023 110 98 8 chr1 213874768 213875124 -68318540 - MSTA LTR MaLR -40 388 1 8891 179 29 3 chr1 213875124 213875427 -68318237 - MSTA-int LTR MaLR 0 1651 1357 2138 143 0 3 chr1 213875427 213875728 -68317936 - AluSx SINE Alu -12 300 1 8891 179 29 3 chr1 213875728 213877034 -68316630 - MSTA-int LTR MaLR -294 1357 1 2419 112 120 5 chr1 213877034 213877418 -68316246 - MSTA LTR MaLR 0 428 1 25 51 0 0 chr1 213877439 213877478 -68316186 + AT_rich Low_complexity Low_complexity 1 39 0 1282 185 3 3 chr1 213877485 213877793 -68315871 + L1MC1 LINE L1 3310 3617 -2809 * 5423 165 42 19 chr1 213877783 213878436 -68315228 + L1MC1 LINE L1 5079 5716 -897 2162 135 0 0 chr1 213878436 213878739 -68314925 + AluSx SINE Alu 1 303 -9 5423 165 42 19 chr1 213878739 213879580 -68314084 + L1MC1 LINE L1 5716 6613 0 3249 203 53 32 chr1 213879577 213880042 -68313622 + L1ME2 LINE L1 5197 5651 -513 * 1456 194 0 58 chr1 213880042 213880336 -68313328 + AluJb SINE Alu 2 278 -34 3249 203 53 32 chr1 213880336 213880821 -68312843 + L1ME2 LINE L1 5651 6151 -13 1592 192 7 7 chr1 213881228 213881535 -68312129 - AluJb SINE Alu -5 307 1 377 201 105 0 chr1 213881699 213881816 -68311848 - AluJ/FLAM SINE Alu -219 83 1 360 326 98 14 chr1 213882933 213882959 -68310705 + MIR SINE MIR 2 24 -238 2230 132 0 0 chr1 213882959 213883263 -68310401 + AluSx SINE Alu 1 304 -8 360 326 98 14 chr1 213883263 213883451 -68310213 + MIR SINE MIR 24 234 -28 889 251 46 46 chr1 213883937 213884263 -68309401 - L2 LINE L2 -952 2362 2037 230 266 55 23 chr1 213885711 213885839 -68307825 - L1MC/D LINE L1 -1915 5893 5762 248 333 0 0 chr1 213885847 213885958 -68307706 - L1MC/D LINE L1 -380 5741 5631 836 154 8 0 chr1 213886000 213886123 -68307541 + FLAM_C SINE Alu 1 124 -19 228 264 14 14 chr1 213886170 213886242 -68307422 - L1MC/D LINE L1 -2211 5597 5526 2261 92 10 0 chr1 213886299 213886592 -68307072 + AluSx SINE Alu 1 296 -16 279 0 0 0 chr1 213886743 213886774 -68306890 + (TG)n Simple_repeat Simple_repeat 2 32 0 2313 121 0 0 chr1 213889515 213889828 -68303836 + AluSq SINE Alu 1 313 0 363 319 55 27 chr1 213889979 213890225 -68303439 + MIR SINE MIR 3 255 -7 430 274 88 0 chr1 213890485 213890598 -68303066 - L2 LINE L2 -1 3271 3149 305 262 0 0 chr1 213890612 213890673 -68302991 + L2 LINE L2 3203 3263 -9 2314 110 0 0 chr1 213890729 213891038 -68302626 - AluSx SINE Alu -3 309 1 540 281 90 75 chr1 213891573 213891975 -68301689 + MLT1I LTR MaLR 2 409 0 2042 131 6 13 chr1 213892442 213892756 -68300908 - AluSx SINE Alu 0 312 1 349 353 86 21 chr1 213893094 213893281 -68300383 - MIR3 SINE MIR -7 201 3 23 78 0 0 chr1 213893927 213893978 -68299686 + GC_rich Low_complexity Low_complexity 1 51 0 313 309 148 47 chr1 213894180 213894436 -68299228 - L1M2 LINE L1 -5960 889 608 1798 108 37 0 chr1 213897618 213897859 -68295805 + AluSg SINE Alu 39 288 -22 430 218 104 57 chr1 213898531 213898724 -68294940 - LTR50 LTR ERVL -589 206 5 307 280 153 8 chr1 213898784 213898902 -68294762 - L2 LINE L2 -9 3304 3170 200 296 99 52 chr1 213899955 213900149 -68293515 + MIR SINE MIR 29 237 -25 386 218 26 0 chr1 213900441 213900597 -68293067 + (TA)n Simple_repeat Simple_repeat 1 160 0 290 294 20 0 chr1 213900597 213900699 -68292965 - L1ME3 LINE L1 -70 6092 5989 2236 155 66 0 chr1 213900898 213901323 -68292341 + L1MB5 LINE L1 5689 6141 -33 704 258 61 18 chr1 213901546 213901775 -68291889 - MIR SINE MIR -21 241 3 262 185 123 49 chr1 213901775 213901844 -68291820 - MIR SINE MIR -48 214 140 1643 142 21 78 chr1 213901956 213902287 -68291377 - AluJo SINE Alu 0 312 1 249 358 111 0 chr1 213902329 213902410 -68291254 + L2 LINE L2 3168 3257 -15 282 356 23 9 chr1 213902584 213902803 -68290861 - L1ME3 LINE L1 -2021 5787 5566 246 302 104 0 chr1 213902913 213903019 -68290645 - MIR SINE MIR -115 147 31 1677 151 13 29 chr1 213903320 213903631 -68290033 - AluJb SINE Alu -3 309 4 1032 139 0 87 chr1 213903776 213903984 -68289680 - MER46A DNA MER2_type 0 236 47 1780 140 22 32 chr1 213904040 213904355 -68289309 - AluSx SINE Alu 0 312 1 1936 148 0 37 chr1 213904981 213905305 -68288359 - AluJo SINE Alu 0 312 1 27 0 0 0 chr1 213905468 213905495 -68288169 + AT_rich Low_complexity Low_complexity 1 27 0 1711 159 40 11 chr1 213905661 213905961 -68287703 + AluJo SINE Alu 1 308 0 998 192 39 83 chr1 213906365 213906487 -68287177 - MER2 DNA MER2_type 0 344 218 1621 175 36 4 chr1 213906487 213906761 -68286903 + AluJb SINE Alu 1 283 -29 998 192 39 83 chr1 213906761 213906998 -68286666 - MER2 DNA MER2_type -126 218 1 201 311 122 0 chr1 213907462 213907536 -68286128 - MIR3 SINE MIR -39 169 87 284 247 86 12 chr1 213908289 213908370 -68285294 + MIR SINE MIR 16 102 -160 1610 192 6 43 chr1 213909471 213909751 -68283913 + AluJo SINE Alu 1 269 -43 1982 51 0 0 chr1 213909751 213909985 -68283679 - AluY SINE Alu -1 310 77 1610 192 6 43 chr1 213909985 213910027 -68283637 + AluJo SINE Alu 269 311 -1 214 364 23 15 chr1 213910468 213910600 -68283064 - MIR3 SINE MIR -12 196 64 223 250 31 0 chr1 213910970 213911034 -68282630 + (TA)n Simple_repeat Simple_repeat 2 67 0 413 260 221 22 chr1 213911468 213911699 -68281965 + L1MC/D LINE L1 5373 5649 -2159 348 251 73 89 chr1 213911877 213912056 -68281608 - MER5B DNA MER1_type -1 177 2 2133 197 15 59 chr1 213912200 213912728 -68280936 - MLT1D LTR MaLR 0 505 1 496 171 0 0 chr1 213913049 213913125 -68280539 + Tigger5 DNA MER2_type 2 77 -2246 372 203 25 0 chr1 213913126 213913205 -68280459 - Tigger5 DNA MER2_type -3 2320 2240 415 160 13 0 chr1 213913232 213913307 -68280357 + Tigger5 DNA MER2_type 2247 2322 -1 1484 169 52 58 chr1 213913315 213913646 -68280018 - L1 LINE L1 -1593 4553 4224 5082 94 71 26 chr1 213913646 213914437 -68279227 + LTR12 LTR ERV1 1 826 0 1484 169 52 58 chr1 213914437 213914567 -68279097 - L1 LINE L1 -1922 4224 4095 191 359 76 0 chr1 213915192 213915284 -68278380 + L2 LINE L2 3173 3271 -1 2339 90 0 3 chr1 213916343 213916643 -68277021 - AluSc SINE Alu -10 299 1 902 107 0 0 chr1 213916643 213916764 -68276900 - AluSg/x SINE Alu -17 293 173 1713 208 85 37 chr1 213916913 213917395 -68276269 + MLT1D LTR MaLR 1 505 0 1954 156 3 16 chr1 213917806 213918114 -68275550 + AluJb SINE Alu 1 304 -8 398 331 99 6 chr1 213918817 213918989 -68274675 - MIR SINE MIR -44 218 31 2385 65 7 3 chr1 213919263 213919571 -68274093 - AluY SINE Alu -2 309 1 758 218 117 17 chr1 213919717 213919956 -68273708 - LTR34 LTR ERV1 -180 519 257 445 214 17 17 chr1 213920080 213920197 -68273467 - MER4A LTR ERV1 -547 117 1 377 250 0 0 chr1 213920977 213921053 -68272611 - L2 LINE L2 -9 3263 3188 346 327 0 60 chr1 213921156 213921306 -68272358 - L2 LINE L2 -311 3002 2862 2161 108 0 0 chr1 213921307 213921593 -68272071 + AluY SINE Alu 15 300 -11 354 287 72 6 chr1 213921753 213921920 -68271744 - L1MC/D LINE L1 -1994 5814 5637 29 0 0 0 chr1 213921920 213921949 -68271715 + AT_rich Low_complexity Low_complexity 1 29 0 1819 252 77 57 chr1 213922415 213923113 -68270551 - MER21B LTR ERV1 -54 809 98 358 200 14 0 chr1 213923167 213923237 -68270427 - MER21B LTR ERV1 -773 90 20 1789 126 15 60 chr1 213923272 213923605 -68270059 - MER2 DNA MER2_type -26 319 2 2084 106 7 0 chr1 213923635 213923919 -68269745 - AluSx SINE Alu -17 295 10 1880 124 138 11 chr1 213924119 213924489 -68269175 - MSTA LTR MaLR -11 417 1 2362 88 13 0 chr1 213924913 213925220 -68268444 - AluY SINE Alu 0 311 1 433 235 204 41 chr1 213925360 213925581 -68268083 - L1MC/D LINE L1 -1314 4832 4576 490 307 73 7 chr1 213925604 213925904 -68267760 - L1MC/D LINE L1 -1647 4499 4180 232 173 0 39 chr1 213925909 213925961 -68267703 + C-rich Low_complexity Low_complexity 6 55 0 458 291 99 47 chr1 213926159 213926581 -68267083 - L1MC/D LINE L1 -2770 3376 2933 2051 125 0 4 chr1 213926598 213926879 -68266785 + AluSx SINE Alu 1 280 -32 961 46 0 0 chr1 213927288 213927397 -68266267 + AluSq/x SINE Alu 27 135 -178 1874 67 5 0 chr1 213927398 213927622 -68266042 + AluSx SINE Alu 2 226 -86 1103 121 47 70 chr1 213927910 213928290 -68265374 + LTR54 LTR ERV1 1 468 -42 2303 66 11 3 chr1 213928290 213928577 -68265087 + AluSq SINE Alu 9 297 -16 1103 121 47 70 chr1 213928577 213928620 -68265044 + LTR54 LTR ERV1 468 510 0 273 176 88 22 chr1 213928972 213929063 -68264601 - LTR65 LTR ERV1 -105 564 468 8666 101 16 28 chr1 213929703 213930030 -68263634 - HSMAR1 DNA Mariner 0 1287 958 2164 96 3 54 chr1 213930030 213930344 -68263320 - AluSq SINE Alu -15 298 1 8666 101 16 28 chr1 213930344 213930980 -68262684 - HSMAR1 DNA Mariner -329 958 340 2286 97 3 19 chr1 213930980 213931289 -68262375 - AluSx SINE Alu -8 304 1 8666 101 16 28 chr1 213931289 213931626 -68262038 - HSMAR1 DNA Mariner -947 340 1 533 100 0 0 chr1 213932166 213932236 -68261428 - FRAM/FAM SINE Alu -87 89 20 1341 155 125 15 chr1 213932277 213932541 -68261123 - AluSg SINE Alu -17 293 1 22 0 0 0 chr1 213932572 213932594 -68261070 + AT_rich Low_complexity Low_complexity 1 22 0 1263 198 0 9 chr1 213932600 213932822 -68260842 - AluJo SINE Alu -36 276 57 2389 74 40 0 chr1 213933771 213934070 -68259594 - AluY SINE Alu 0 311 1 2340 79 7 0 chr1 213934294 213934586 -68259078 - AluSx SINE Alu -18 294 1 668 293 153 28 chr1 213935114 213935466 -68258198 + L3 LINE CR1 1141 1536 -41 1774 176 55 3 chr1 213935791 213936138 -68257526 - MLT1A1 LTR MaLR 0 365 1 322 312 83 0 chr1 213936419 213936528 -68257136 - L2 LINE L2 0 3272 3155 792 312 117 35 chr1 213936637 213936995 -68256669 - L2 LINE L2 -906 2408 2002 1657 81 5 0 chr1 213936995 213937204 -68256460 + AluSp SINE Alu 87 296 -17 792 312 117 35 chr1 213937204 213937306 -68256358 - L2 LINE L2 -1312 2002 1910 391 203 13 13 chr1 213937306 213937385 -68256279 - MER2 DNA MER2_type 0 345 267 241 73 24 0 chr1 213937473 213937514 -68256150 - MER2 DNA MER2_type -172 173 132 254 49 24 0 chr1 213937592 213937633 -68256031 - MER2 DNA MER2_type -172 173 132 1903 155 25 31 chr1 213937642 213937959 -68255705 - MER1B DNA MER1_type -24 315 1 874 176 0 7 chr1 213937959 213938099 -68255565 - MER2 DNA MER2_type -206 139 1 193 246 0 77 chr1 213938106 213938171 -68255493 - L2 LINE L2 -1414 1900 1841 255 321 60 30 chr1 213938241 213938375 -68255289 - L2 LINE L2 -1487 1827 1690 1394 102 0 5 chr1 213938382 213938565 -68255099 + AluSx SINE Alu 1 184 -128 2272 104 0 0 chr1 213938565 213938854 -68254810 - AluSg SINE Alu -21 289 1 1394 102 0 5 chr1 213938854 213938866 -68254798 + AluSx SINE Alu 184 195 -117 319 272 40 56 chr1 213938901 213939026 -68254638 - L2 LINE L2 -2126 1188 1066 201 339 142 31 chr1 213939798 213939925 -68253739 - MIR3 SINE MIR -38 170 30 394 269 28 14 chr1 213940036 213940181 -68253483 + L1MC5 LINE L1 7784 7930 -31 2071 111 3 44 chr1 213940448 213940763 -68252901 - AluSq SINE Alu -11 302 1 2204 118 0 0 chr1 213940813 213941109 -68252555 - AluSg SINE Alu -14 296 1 26 50 0 0 chr1 213941319 213941359 -68252305 + AT_rich Low_complexity Low_complexity 1 40 0 2972 276 122 18 chr1 213942076 213942766 -68250898 + L2 LINE L2 1695 2533 -781 2144 117 3 7 chr1 213942766 213943075 -68250589 - AluSg SINE Alu -2 308 1 2972 276 122 18 chr1 213943075 213943437 -68250227 + L2 LINE L2 2533 2856 -458 364 266 139 19 chr1 213943522 213943680 -68249984 + MER5B DNA MER1_type 2 178 0 207 309 204 12 chr1 213943799 213943961 -68249703 - L3 LINE CR1 -16 1561 1369 * 734 280 201 25 chr1 213943952 213944316 -68249348 + L2 LINE L2 2886 3313 0 267 336 84 14 chr1 213944528 213944671 -68248993 - L3 LINE CR1 -451 1126 974 1181 146 16 112 chr1 213944871 213945193 -68248471 - L1MB3 LINE L1 0 6183 5893 521 133 88 18 chr1 213945266 213945379 -68248285 - L1MB3 LINE L1 -264 5907 5787 198 326 11 22 chr1 213945389 213945481 -68248183 - L3 LINE CR1 -820 757 667 459 260 72 88 chr1 213945674 213945855 -68247809 + MIR SINE MIR 51 228 -34 1521 171 21 18 chr1 213946188 213946469 -68247195 - AluJo SINE Alu -30 282 1 203 333 111 0 chr1 213947241 213947349 -68246315 + L2 LINE L2 3188 3307 -6 2409 68 0 0 chr1 213947392 213947684 -68245980 - AluSc SINE Alu -17 292 1 2295 91 14 3 chr1 213947686 213947982 -68245682 - AluSx SINE Alu -13 299 1 198 0 0 0 chr1 213950467 213950489 -68243175 + (T)n Simple_repeat Simple_repeat 1 22 0 3341 182 108 32 chr1 213951051 213952383 -68241281 - L1MB4 LINE L1 -2 6178 4734 2102 238 132 9 chr1 213952562 213953221 -68240443 + L1M4 LINE L1 298 1037 -5505 2512 188 89 29 chr1 213953226 213953896 -68239768 + Tigger7 DNA MER2_type 7 2586 -1 1816 232 181 13 chr1 213953897 213954808 -68238856 + L1M4 LINE L1 1044 2103 -4543 329 187 121 88 chr1 213954811 213954902 -68238762 - MLT1A2 LTR MaLR 0 467 280 1876 162 194 20 chr1 213954903 213955550 -68238114 + L1MDa LINE L1 1830 2616 -3924 2379 77 0 3 chr1 213955552 213955850 -68237814 + AluY SINE Alu 1 297 -14 2392 235 97 28 chr1 213955893 213956365 -68237299 + L1M4 LINE L1 3956 4394 -2250 1756 153 37 14 chr1 213956365 213956660 -68237004 + AluJb SINE Alu 1 302 -10 2392 235 97 28 chr1 213956660 213957039 -68236625 + L1M4 LINE L1 4394 4866 -1778 23 0 0 0 chr1 213957051 213957074 -68236590 + AT_rich Low_complexity Low_complexity 1 23 0 642 203 89 30 chr1 213957107 213957344 -68236320 + L1M4 LINE L1 3797 4047 -2099 1670 191 89 45 chr1 213957359 213957585 -68236079 - MLT1C LTR MaLR -4 463 248 2165 135 0 3 chr1 213957585 213957889 -68235775 - AluSx SINE Alu -7 305 3 1670 191 89 45 chr1 213957889 213958102 -68235562 - MLT1C LTR MaLR -219 248 5 1902 211 24 95 chr1 213958106 213958652 -68235012 - MLT1C-int LTR MaLR 0 1371 865 3329 148 21 126 chr1 213958723 213959288 -68234376 - MLT1C-int LTR MaLR -484 887 264 2188 106 3 3 chr1 213959288 213959589 -68234075 - AluSx SINE Alu -7 305 5 3329 148 21 126 chr1 213959589 213959616 -68234048 - MLT1C-int LTR MaLR -1107 264 236 819 192 23 47 chr1 213959616 213959788 -68233876 - FAM SINE Alu -4 171 4 3329 148 21 126 chr1 213959788 213960053 -68233611 - MLT1C-int LTR MaLR -1135 236 119 1244 186 13 9 chr1 213960054 213960280 -68233384 + AluJo SINE Alu 73 299 -13 2187 122 30 10 chr1 213960316 213960892 -68232772 + L1MA9 LINE L1 5003 5587 -725 699 237 53 0 chr1 213960892 213961061 -68232603 + AluJo SINE Alu 113 290 -22 2197 133 28 68 chr1 213961061 213961490 -68232174 + L1MA9 LINE L1 5614 6025 -287 506 188 10 10 chr1 213961553 213961649 -68232015 + MLT1A2 LTR MaLR 1 96 -278 399 40 67 53 chr1 213961649 213961724 -68231940 + L1MA4 LINE L1 6219 6294 -6 1946 163 0 10 chr1 213961786 213962093 -68231571 + AluJb SINE Alu 1 304 -8 296 272 95 34 chr1 213962131 213962235 -68231429 + HAL1 LINE L1 1209 1326 -1181 2335 97 0 0 chr1 213962235 213962544 -68231120 - AluY SINE Alu -2 309 1 296 272 95 34 chr1 213962544 213962586 -68231078 + HAL1 LINE L1 1326 1364 -1143 2317 100 3 0 chr1 213962771 213963072 -68230592 - AluSx SINE Alu -10 302 1 1972 137 3 3 chr1 213963154 213963447 -68230217 - AluSx SINE Alu -19 293 1 21 0 0 0 chr1 213963450 213963471 -68230193 + AT_rich Low_complexity Low_complexity 1 21 0 4759 144 51 28 chr1 213963737 213964583 -68229081 + MER6 DNA MER2_type 1 865 0 396 299 161 18 chr1 213965020 213965237 -68228427 + MIR SINE MIR 13 260 -2 506 325 55 24 chr1 213965857 213966272 -68227392 + ERVL LTR ERVL 1248 1675 -4089 856 292 101 12 chr1 213966379 213966725 -68226939 + ERVL LTR ERVL 1845 2221 -3543 32 43 0 0 chr1 213968946 213968992 -68224672 + AT_rich Low_complexity Low_complexity 1 46 0 200 395 67 17 chr1 213969511 213969630 -68224034 + L2 LINE L2 3127 3251 -21 741 140 0 98 chr1 213969947 213970090 -68223574 + FLAM_A SINE Alu 1 129 -4 24 53 0 0 chr1 213970114 213970152 -68223512 + AT_rich Low_complexity Low_complexity 1 38 0 2707 156 32 2 chr1 213970423 213970918 -68222746 - L1PA16 LINE L1 -9 6157 5648 194 264 99 55 chr1 213970962 213971053 -68222611 - MIR3 SINE MIR -3 205 111 507 228 70 0 chr1 213971064 213971178 -68222486 - FLAM_A SINE Alu -8 125 4 2134 133 7 0 chr1 213971317 213971618 -68222046 - AluSx SINE Alu -8 304 2 30 83 0 0 chr1 213972155 213972227 -68221437 + AT_rich Low_complexity Low_complexity 1 72 0 218 194 0 0 chr1 213972455 213972491 -68221173 + (CATA)n Simple_repeat Simple_repeat 2 37 0 1563 176 30 27 chr1 213973053 213973349 -68220315 + AluJb SINE Alu 5 301 -11 235 227 0 0 chr1 213973922 213973966 -68219698 - Alu SINE Alu -11 291 248 824 153 0 22 chr1 213973966 213974103 -68219561 - AluJb SINE Alu -178 134 1 332 212 83 0 chr1 213974208 213974340 -68219324 + L1MB3 LINE L1 6040 6182 -1 296 277 50 99 chr1 213974658 213974739 -68218925 + MIR SINE MIR 9 82 -180 728 192 0 0 chr1 213974739 213974864 -68218800 - FLAM_A SINE Alu -8 125 1 296 277 50 99 chr1 213974864 213974923 -68218741 + MIR SINE MIR 82 142 -120 1048 154 0 0 chr1 213974934 213975096 -68218568 - AluY SINE Alu -17 294 133 1891 133 26 0 chr1 213975383 213975654 -68218010 + AluSg SINE Alu 26 303 -7 469 298 15 0 chr1 213975661 213975792 -68217872 + MIR3 SINE MIR 33 165 -43 2327 103 0 6 chr1 213976109 213976421 -68217243 + AluSp SINE Alu 1 310 -3 2273 111 0 0 chr1 213976466 213976773 -68216891 + AluSq SINE Alu 1 307 -6 233 278 0 0 chr1 213977464 213977516 -68216148 - L2 LINE L2 -11 3302 3210 235 216 0 0 chr1 213977518 213977569 -68216095 + L1MC4 LINE L1 6652 6702 -1340 296 255 31 31 chr1 213977591 213977689 -68215975 - MIR SINE MIR -58 204 107 478 216 17 9 chr1 213977815 213977931 -68215733 - L1ME2 LINE L1 -9 6155 6039 1919 254 142 110 chr1 213978915 213979628 -68214036 + HAL1 LINE L1 1 690 -1817 2293 67 7 0 chr1 213979628 213979911 -68213753 - AluY SINE Alu -4 307 23 1919 254 142 110 chr1 213979911 213980493 -68213171 + HAL1 LINE L1 690 1252 -1255 2140 139 0 0 chr1 213980493 213980802 -68212862 + AluSx SINE Alu 1 309 -3 1919 254 142 110 chr1 213980802 213980870 -68212794 + HAL1 LINE L1 1252 1316 -1191 2166 131 0 3 chr1 213980870 213981183 -68212481 + AluSx SINE Alu 1 312 0 1919 254 142 110 chr1 213981183 213981865 -68211799 + HAL1 LINE L1 1316 2113 -394 821 154 23 0 chr1 213981865 213981995 -68211669 - FLAM_C SINE Alu -8 135 3 604 219 66 66 chr1 213982017 213982213 -68211451 + MLT1F LTR MaLR 5 200 -342 1069 129 0 13 chr1 213982231 213982386 -68211278 - FRAM SINE Alu -13 163 11 768 213 25 19 chr1 213982386 213982546 -68211118 + MLT1E LTR MaLR 431 591 -2 375 236 311 33 chr1 213982551 213982815 -68210849 + HAL1 LINE L1 2114 2303 -204 2176 88 16 29 chr1 213982815 213983121 -68210543 - AluSx SINE Alu -10 302 1 375 236 311 33 chr1 213983121 213983161 -68210503 + HAL1 LINE L1 2303 2503 -4 313 300 100 25 chr1 213983543 213983703 -68209961 + HAL1b LINE L1 740 911 -437 2217 116 3 3 chr1 213983768 213984079 -68209585 + AluSx SINE Alu 1 311 -1 510 253 125 21 chr1 213984341 213984762 -68208902 + L1M4 LINE L1 3594 4060 -2086 1887 147 7 13 chr1 213984762 213985068 -68208596 + AluSx SINE Alu 1 304 -8 510 253 125 21 chr1 213985068 213985134 -68208530 + L1M4 LINE L1 4060 4118 -2028 248 333 9 0 chr1 213985348 213985453 -68208211 + L1M4 LINE L1 4742 4847 -1299 338 232 189 32 chr1 213985769 213985864 -68207800 + L2 LINE L2 3159 3268 -4 23 0 0 0 chr1 213985902 213985925 -68207739 + AT_rich Low_complexity Low_complexity 1 23 0 273 339 26 17 chr1 213986776 213986891 -68206773 - L2 LINE L2 -1 3312 3197 1240 147 15 20 chr1 213987430 213987634 -68206030 - AluSg/x SINE Alu -21 291 89 1657 158 43 13 chr1 213989331 213989634 -68204030 + AluJb SINE Alu 1 312 0 2196 120 0 0 chr1 213990056 213990355 -68203309 + AluSx SINE Alu 1 299 -13 592 225 109 7 chr1 213990833 213990971 -68202693 - MIR SINE MIR -99 163 12 1126 211 136 58 chr1 213991202 213991907 -68201757 + L1MC5 LINE L1 7201 7960 -1 563 189 38 30 chr1 213993519 213993651 -68200013 - MER105 DNA DNA -41 163 31 1538 195 98 62 chr1 213994491 213994911 -68198753 + MER63B DNA MER1_type 2 436 0 21 0 0 0 chr1 213995780 213995801 -68197863 + AT_rich Low_complexity Low_complexity 1 21 0 244 210 16 16 chr1 213996035 213996097 -68197567 + (TA)n Simple_repeat Simple_repeat 1 62 0 279 330 11 11 chr1 213996097 213996188 -68197476 + MIR SINE MIR 41 131 -77 407 369 164 7 chr1 213996265 213996693 -68196971 + L2 LINE L2 2004 2498 -816 1383 283 53 0 chr1 213996693 213997106 -68196558 + L2 LINE L2 2097 2531 -783 386 309 82 67 chr1 213997674 213997939 -68195725 - L1MC4a LINE L1 -1873 5935 5662 1769 181 7 10 chr1 213997939 213998238 -68195426 - AluJo SINE Alu -14 298 1 386 309 82 67 chr1 213998238 213998328 -68195336 - L1MC4a LINE L1 -2146 5662 5575 630 235 93 25 chr1 214000008 214000212 -68193452 + MLT1J LTR MaLR 288 505 -6 181 304 62 57 chr1 214001041 214001235 -68192429 - L2 LINE L2 -433 2881 2687 409 338 92 34 chr1 214001296 214001675 -68191989 - L2 LINE L2 -783 2531 2131 22 56 0 0 chr1 214001715 214001751 -68191913 + AT_rich Low_complexity Low_complexity 1 36 0 227 351 126 29 chr1 214002533 214002707 -68190957 + L2 LINE L2 3073 3263 -9 21 71 0 0 chr1 214002803 214002845 -68190819 + AT_rich Low_complexity Low_complexity 1 42 0 891 114 0 30 chr1 214002848 214002980 -68190684 - FRAM SINE Alu -36 140 13 213 308 0 0 chr1 214005129 214005246 -68188418 + (CTGGGG)n Simple_repeat Simple_repeat 2 118 0 21 0 0 0 chr1 214006018 214006039 -68187625 + GC_rich Low_complexity Low_complexity 1 21 0 2123 219 40 26 chr1 214007381 214007912 -68185752 - MLT1F LTR MaLR -4 538 1 2010 125 16 10 chr1 214008352 214008655 -68185009 - AluSq SINE Alu -8 305 1 199 308 154 0 chr1 214008666 214008770 -68184894 - MIR SINE MIR -56 206 87 2003 109 22 4 chr1 214009062 214009360 -68184304 + AluSg SINE Alu 2 304 0 446 163 49 98 chr1 214009705 214009828 -68183836 - MIR SINE MIR -56 206 90 1714 176 24 10 chr1 214010057 214010352 -68183312 + AluJb SINE Alu 1 299 -13 727 227 53 136 chr1 214010803 214011177 -68182487 + L2 LINE L2 1801 2143 -1171 262 272 228 9 chr1 214011177 214011291 -68182373 + L2 LINE L2 2400 2538 -776 13587 113 43 73 chr1 214011291 214011481 -68182183 - Tigger1 DNA MER2_type -1 2417 2223 537 161 34 17 chr1 214011481 214011599 -68182065 + FAM SINE Alu 43 162 -23 13587 113 43 73 chr1 214011599 214012028 -68181636 - Tigger1 DNA MER2_type -195 2223 1783 2208 113 0 7 chr1 214012028 214012328 -68181336 - AluSg SINE Alu -12 298 1 13587 113 43 73 chr1 214012328 214014078 -68179586 - Tigger1 DNA MER2_type -635 1783 4 1333 254 69 83 chr1 214014081 214014843 -68178821 + L2 LINE L2 2536 3300 -13 1837 122 0 4 chr1 214015551 214015806 -68177858 - AluSx SINE Alu -22 290 37 330 267 59 20 chr1 214015835 214015936 -68177728 - MIR SINE MIR -98 164 60 355 293 103 0 chr1 214016767 214016883 -68176781 + MIR SINE MIR 64 191 -71 22 0 0 0 chr1 214017093 214017115 -68176549 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr1 214017914 214017940 -68175724 + AT_rich Low_complexity Low_complexity 1 26 0 761 150 0 0 chr1 214018245 214018365 -68175299 + FLAM_C SINE Alu 1 120 -23 21 0 0 0 chr1 214018410 214018431 -68175233 + AT_rich Low_complexity Low_complexity 1 21 0 822 133 0 31 chr1 214020379 214020507 -68173157 - AluJo/FRAM SINE Alu -45 267 144 246 167 0 0 chr1 214020507 214020543 -68173121 + Alu SINE Alu 243 278 -22 330 349 61 8 chr1 214020666 214020798 -68172866 + L2 LINE L2 3134 3272 0 688 300 56 31 chr1 214021009 214021401 -68172263 - L1ME4a LINE L1 -273 5848 5440 2353 76 13 3 chr1 214021401 214021704 -68171960 + AluSc SINE Alu 1 306 -3 688 300 56 31 chr1 214021704 214021791 -68171873 - L1ME4a LINE L1 -681 5440 5357 25 0 0 0 chr1 214021922 214021947 -68171717 + AT_rich Low_complexity Low_complexity 1 25 0 1740 149 9 54 chr1 214022046 214022361 -68171303 + AluJb SINE Alu 1 301 -11 1810 163 0 17 chr1 214022368 214022663 -68171001 + AluJb SINE Alu 1 290 -22 23 33 0 0 chr1 214022723 214022753 -68170911 + AT_rich Low_complexity Low_complexity 1 30 0 1918 145 0 37 chr1 214023838 214024162 -68169502 - AluJb SINE Alu 0 312 1 1779 180 13 0 chr1 214024644 214024949 -68168715 + AluJo SINE Alu 3 311 -1 287 254 42 120 chr1 214024962 214025104 -68168560 - L2 LINE L2 -233 3039 2909 2438 77 0 0 chr1 214025337 214025636 -68168028 + AluY SINE Alu 1 299 -12 306 342 90 59 chr1 214026526 214027094 -68166570 - L2 LINE L2 0 3272 2686 2199 110 7 0 chr1 214027627 214027918 -68165746 + AluSx SINE Alu 5 297 -15 912 154 33 125 chr1 214028453 214028543 -68165121 + MER20 DNA MER1_type 1 98 -121 1875 165 7 0 chr1 214028543 214028828 -68164836 + AluJb SINE Alu 6 292 -20 912 154 33 125 chr1 214028828 214028977 -68164687 + MER20 DNA MER1_type 98 218 -1 2087 127 0 0 chr1 214029626 214029918 -68163746 + AluSx SINE Alu 7 298 -14 429 318 55 27 chr1 214030228 214030448 -68163216 - MIR SINE MIR -29 233 8 1920 157 10 13 chr1 214031025 214031331 -68162333 + AluJb SINE Alu 6 310 -2 2291 94 0 3 chr1 214031490 214031787 -68161877 + AluSq SINE Alu 3 298 -15 1979 123 41 0 chr1 214031923 214032216 -68161448 - AluSx SINE Alu -6 306 2 208 311 151 0 chr1 214033246 214033352 -68160312 + L2 LINE L2 3143 3264 -8 21 36 0 0 chr1 214035269 214035297 -68158367 + AT_rich Low_complexity Low_complexity 1 28 0 235 190 74 66 chr1 214035310 214035394 -68158270 + L1ME4a LINE L1 5999 6081 -40 2308 92 0 3 chr1 214035394 214035689 -68157975 - AluSx SINE Alu -18 294 1 1818 137 30 23 chr1 214035689 214035987 -68157677 - AluSx SINE Alu -11 301 1 235 190 74 66 chr1 214035987 214036022 -68157642 + L1ME4a LINE L1 6080 6120 -1 338 301 57 16 chr1 214036130 214036253 -68157411 - L2 LINE L2 -38 3275 3148 2266 84 0 26 chr1 214036319 214036627 -68157037 - AluSq SINE Alu -13 300 1 311 289 11 22 chr1 214036726 214036816 -68156848 - MIR SINE MIR -153 109 21 211 353 94 29 chr1 214037401 214037571 -68156093 - MER5A DNA MER1_type -7 182 2 1633 163 17 34 chr1 214037623 214037918 -68155746 - AluJo SINE Alu -22 290 1 235 152 15 15 chr1 214038422 214038488 -68155176 + (TA)n Simple_repeat Simple_repeat 1 66 0 2240 102 3 0 chr1 214038489 214038782 -68154882 - AluSx SINE Alu -18 294 1 1562 171 48 0 chr1 214038790 214039083 -68154581 - L1MC1 LINE L1 0 6333 6027 26 50 0 0 chr1 214039299 214039339 -68154325 + AT_rich Low_complexity Low_complexity 1 40 0 835 236 79 10 chr1 214039663 214039866 -68153798 + MIR SINE MIR 36 252 -10 776 294 80 11 chr1 214040814 214041090 -68152574 + L2 LINE L2 2237 2531 -783 695 102 10 0 chr1 214041090 214041188 -68152476 - FLAM_A SINE Alu -15 127 29 306 240 83 50 chr1 214041188 214041284 -68152380 - L1ME2 LINE L1 -33 6131 6029 2272 114 0 0 chr1 214041284 214041582 -68152082 - AluSx SINE Alu -14 298 1 306 240 83 50 chr1 214041582 214041606 -68152058 - L1ME2 LINE L1 -135 6029 6007 2705 208 48 82 chr1 214041607 214042091 -68151573 - L1MEc LINE L1 -3051 3375 2876 2188 116 0 3 chr1 214042091 214042394 -68151270 - AluSc SINE Alu -2 307 6 2705 208 48 82 chr1 214042394 214043170 -68150494 - L1MEc LINE L1 -3550 2876 2187 824 297 48 6 chr1 214043217 214043571 -68150093 - L1MEc LINE L1 -5237 1189 821 29957 101 16 25 chr1 214043633 214047573 -68146091 - L1PA7 LINE L1 0 6469 2501 2254 101 3 0 chr1 214047573 214047870 -68145794 - AluSg SINE Alu -12 298 1 29957 101 16 25 chr1 214047870 214050349 -68143315 - L1PA7 LINE L1 -3968 2501 1 538 259 47 38 chr1 214050458 214050670 -68142994 - L1MEc LINE L1 -5855 561 348 825 163 49 69 chr1 214050929 214051132 -68142532 + MIR SINE MIR 31 229 -33 2315 71 17 7 chr1 214051976 214052273 -68141391 + AluSq SINE Alu 1 300 -13 1046 80 7 0 chr1 214052795 214052933 -68140731 + AluSg/x SINE Alu 166 304 -8 30 59 0 0 chr1 214053196 214053247 -68140417 + AT_rich Low_complexity Low_complexity 1 51 0 213 204 0 56 chr1 214053710 214053764 -68139900 - L2 LINE L2 -12 3301 3251 1979 123 0 0 chr1 214054001 214054289 -68139375 - AluSq SINE Alu 0 302 15 1888 119 50 0 chr1 214054604 214054882 -68138782 - AluSg SINE Alu -9 301 10 1905 157 3 0 chr1 214056256 214056542 -68137122 + AluJb SINE Alu 3 289 -23 21 0 0 0 chr1 214056720 214056741 -68136923 + AT_rich Low_complexity Low_complexity 1 21 0 1918 150 40 6 chr1 214056939 214057286 -68136378 + L1MA6 LINE L1 5941 6299 -1 189 0 0 0 chr1 214057854 214057875 -68135789 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 6937 55 8 0 chr1 214057875 214059102 -68134562 - L1PA7 LINE L1 -13 6141 4908 6439 90 5 11 chr1 214059102 214060042 -68133622 + L1P LINE L1 3921 4855 -1291 5637 35 0 0 chr1 214060185 214060851 -68132813 + L1PA4 LINE L1 5487 6152 -3 1748 91 0 9 chr1 214061222 214061453 -68132211 + AluSq SINE Alu 70 298 -15 24 0 0 0 chr1 214062017 214062041 -68131623 + AT_rich Low_complexity Low_complexity 1 24 0 695 168 0 15 chr1 214063718 214063849 -68129815 - L1MC4 LINE L1 0 8042 7914 672 191 81 86 chr1 214063876 214064086 -68129578 - L1MC4 LINE L1 -122 7920 7712 1405 199 54 7 chr1 214064198 214064474 -68129190 - AluJb SINE Alu -23 289 1 2265 126 0 0 chr1 214065306 214065616 -68128048 + AluSx SINE Alu 3 312 0 2851 117 81 103 chr1 214065880 214066257 -68127407 + MER1A DNA MER1_type 1 364 -2338 2041 117 0 0 chr1 214066257 214066530 -68127134 - AluSq SINE Alu -40 273 1 2851 117 81 103 chr1 214066530 214066693 -68126971 + MER1A DNA MER1_type 364 529 0 1549 185 10 27 chr1 214066947 214067245 -68126419 - AluJo SINE Alu -19 293 1 492 287 59 0 chr1 214067437 214067573 -68126091 + MIR SINE MIR 98 241 -21 897 289 37 0 chr1 214067862 214068080 -68125584 + MIR SINE MIR 37 262 0 27 0 0 0 chr1 214068094 214068121 -68125543 + AT_rich Low_complexity Low_complexity 1 27 0 286 345 26 26 chr1 214068162 214068275 -68125389 - MIR SINE MIR -64 144 32 1639 164 19 29 chr1 214068488 214068799 -68124865 + AluJb SINE Alu 1 308 -4 276 172 0 0 chr1 214068835 214068893 -68124771 + T-rich Low_complexity Low_complexity 1 58 0 194 321 9 55 chr1 214069227 214069336 -68124328 + L2 LINE L2 2267 2370 -944 336 24 0 0 chr1 214069678 214069719 -68123945 + (CA)n Simple_repeat Simple_repeat 1 41 0 196 356 212 8 chr1 214069912 214070044 -68123620 + L2 LINE L2 2600 2758 -556 341 188 38 105 chr1 214070700 214070833 -68122831 - L1MA5 LINE L1 -2 6298 6175 1135 127 0 0 chr1 214070856 214071029 -68122635 - L1MA5 LINE L1 -414 5886 5714 1279 151 50 31 chr1 214071057 214071109 -68122555 - L1MA6 LINE L1 -105 6195 6145 2067 131 6 26 chr1 214071109 214071422 -68122242 + AluSx SINE Alu 1 307 -5 1279 151 50 31 chr1 214071422 214071628 -68122036 - L1MA6 LINE L1 -155 6145 5932 * 2451 136 2 12 chr1 214071617 214071850 -68121814 - L1MA5 LINE L1 -578 5722 5493 1099 174 185 45 chr1 214071850 214072115 -68121549 - AluJo SINE Alu 0 302 1 2451 136 2 12 chr1 214072115 214072285 -68121379 - L1MA5 LINE L1 -807 5493 5323 2089 89 17 0 chr1 214072285 214072578 -68121086 - L1PA13 LINE L1 -5 6158 5861 697 56 0 11 chr1 214072579 214072669 -68120995 + L1PA13 LINE L1 5786 5874 -289 * 824 137 54 6 chr1 214072666 214072834 -68120830 - L1MA5 LINE L1 -814 5332 5157 * 6659 153 59 40 chr1 214072828 214074199 -68119465 - L1MA5 LINE L1 -1252 4894 3498 1440 171 16 8 chr1 214074199 214074444 -68119220 + Tigger3(Golem) DNA MER2_type 2783 3029 0 778 180 0 0 chr1 214075088 214075210 -68118454 + FLAM_C SINE Alu 1 122 -11 1858 166 0 17 chr1 214076438 214076734 -68116930 + AluJb SINE Alu 1 291 -21 270 81 0 0 chr1 214076799 214076836 -68116828 + (TA)n Simple_repeat Simple_repeat 2 38 0 1757 187 0 3 chr1 214076874 214077163 -68116501 + AluJo SINE Alu 2 289 -23 1467 274 64 32 chr1 214077301 214077940 -68115724 - L2 LINE L2 -160 3153 2502 33 56 0 0 chr1 214078406 214078460 -68115204 + AT_rich Low_complexity Low_complexity 1 54 0 1186 143 12 58 chr1 214078494 214078752 -68114912 + L1MB5 LINE L1 5928 6173 -1 1149 213 65 29 chr1 214078873 214079248 -68114416 - MLT1C LTR MaLR -3 464 6 210 37 0 0 chr1 214079365 214079392 -68114272 + (TG)n Simple_repeat Simple_repeat 2 28 0 1772 161 3 7 chr1 214079392 214079683 -68113981 - AluJb SINE Alu -22 290 1 271 313 38 12 chr1 214081041 214081121 -68112543 - L2 LINE L2 -8 3264 3183 335 258 42 8 chr1 214081357 214081477 -68112187 - MER103 DNA DNA -1 165 42 659 183 15 15 chr1 214081478 214081615 -68112049 - MER5B DNA MER1_type -40 138 2 756 205 99 0 chr1 214081632 214081803 -68111861 + MER5A DNA MER1_type 2 189 0 258 222 19 0 chr1 214081808 214081862 -68111802 - MER5B DNA MER1_type -1 177 123 8814 84 4 10 chr1 214081866 214082370 -68111294 - L1P LINE L1 -2926 3220 2714 2332 67 0 3 chr1 214082370 214082678 -68110986 - AluY SINE Alu 0 307 1 8814 84 4 10 chr1 214082678 214083434 -68110230 - L1P LINE L1 -3432 2714 1967 15243 76 19 0 chr1 214083434 214086334 -68107330 + L1PA7 LINE L1 3228 6143 -11 300 290 70 10 chr1 214086365 214086465 -68107199 + MER5B DNA MER1_type 67 172 -6 205 242 57 129 chr1 214086592 214086626 -68107038 + MIR SINE MIR 64 99 -163 1893 170 3 0 chr1 214086626 214086920 -68106744 - AluJb SINE Alu -17 295 1 205 242 57 129 chr1 214086920 214087009 -68106655 + MIR SINE MIR 99 178 -84 312 306 16 65 chr1 214087070 214087194 -68106470 + MER5A DNA MER1_type 50 167 -22 33 25 0 0 chr1 214087382 214087422 -68106242 + AT_rich Low_complexity Low_complexity 1 40 0 41 58 0 0 chr1 214087488 214087557 -68106107 + AT_rich Low_complexity Low_complexity 1 69 0 294 295 66 0 chr1 214087791 214087914 -68105750 + MIR SINE MIR 45 175 -63 38 0 0 0 chr1 214090190 214090228 -68103436 + AT_rich Low_complexity Low_complexity 1 38 0 323 274 94 0 chr1 214090240 214090346 -68103318 + L2 LINE L2 3154 3269 -3 24 53 0 0 chr1 214090865 214090903 -68102761 + AT_rich Low_complexity Low_complexity 1 38 0 1684 192 0 3 chr1 214091747 214092044 -68101620 - AluJb SINE Alu -16 296 1 187 296 0 0 chr1 214092192 214092236 -68101428 + L2 LINE L2 3214 3257 -15 24 53 0 0 chr1 214092716 214092754 -68100910 + AT_rich Low_complexity Low_complexity 1 38 0 712 188 0 0 chr1 214092754 214092871 -68100793 - FLAM_C SINE Alu -15 118 2 5839 108 51 128 chr1 214092872 214093433 -68100231 - Tigger3b DNA MER2_type -1798 1230 628 1705 173 7 10 chr1 214093433 214093722 -68099942 + AluJo SINE Alu 1 288 -24 5839 108 51 128 chr1 214093722 214094410 -68099254 - Tigger3b DNA MER2_type -2400 628 87 2216 110 3 0 chr1 214094410 214094700 -68098964 - AluSx SINE Alu -19 293 3 5839 108 51 128 chr1 214094700 214094781 -68098883 - Tigger3b DNA MER2_type -2941 87 1 264 286 13 26 chr1 214094784 214094861 -68098803 + HERVL LTR ERVL 1928 2003 -3651 1730 172 20 0 chr1 214094915 214095211 -68098453 - AluJo SINE Alu -10 302 1 1644 190 7 13 chr1 214095258 214095563 -68098101 - AluJo SINE Alu -9 303 1 1032 298 70 5 chr1 214095567 214095953 -68097711 - Charlie7 DNA MER1_type -2041 571 161 781 239 201 34 chr1 214097544 214098051 -68095613 - MLT1G1 LTR MaLR 0 595 4 281 247 155 0 chr1 214098095 214098192 -68095472 - MLT1G1-int LTR MaLR -66 1305 1194 776 168 0 7 chr1 214098759 214098896 -68094768 - FRAM SINE Alu -10 166 31 653 229 20 26 chr1 214099823 214099976 -68093688 - MIR SINE MIR 0 262 111 256 329 12 12 chr1 214100890 214100972 -68092692 - MER91A DNA MER1_type -111 85 4 40 0 0 0 chr1 214152404 214152444 -68041220 + AT_rich Low_complexity Low_complexity 1 40 0 950 120 0 0 chr1 214152444 214152577 -68041087 - FLAM_C SINE Alu 0 133 1 376 289 26 0 chr1 214153776 214153890 -68039774 - MER117 DNA MER1_type -57 140 24 857 53 0 18 chr1 214155831 214155944 -68037720 - AluSg/x SINE Alu -1 311 201 2110 126 10 3 chr1 214156547 214156856 -68036808 + AluSx SINE Alu 1 311 -1 237 65 0 0 chr1 214157939 214157970 -68035694 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 208 0 0 chr1 214158015 214158063 -68035601 + MIR3 SINE MIR 150 197 -11 200 338 15 0 chr1 214158326 214158394 -68035270 - L2 LINE L2 0 3272 3204 509 306 81 10 chr1 214158699 214158908 -68034756 + MER20B DNA MER1_type 44 267 -516 950 228 152 6 chr1 214158926 214159282 -68034382 + MER20B DNA MER1_type 376 783 0 1891 164 0 16 chr1 214160307 214160612 -68033052 + AluSx SINE Alu 1 300 -12 703 311 44 9 chr1 214162495 214162720 -68030944 - MIR SINE MIR -23 239 7 267 31 0 0 chr1 214163368 214163400 -68030264 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr1 214163527 214163548 -68030116 + AT_rich Low_complexity Low_complexity 1 21 0 2396 104 120 5 chr1 214163683 214164067 -68029597 + MSTA LTR MaLR 1 428 0 322 256 0 12 chr1 214166123 214166205 -68027459 - MIR SINE MIR -70 192 112 21 36 0 0 chr1 214167790 214167818 -68025846 + AT_rich Low_complexity Low_complexity 1 28 0 499 283 7 21 chr1 214168158 214168303 -68025361 + MIR SINE MIR 35 177 -85 2146 109 0 10 chr1 214168328 214168631 -68025033 + AluSg SINE Alu 1 300 -10 1759 204 55 49 chr1 214170689 214171203 -68022461 - Charlie1b DNA MER1_type -1 522 6 21 36 0 0 chr1 214172400 214172428 -68021236 + AT_rich Low_complexity Low_complexity 1 28 0 335 361 91 40 chr1 214174233 214174658 -68019006 + L2 LINE L2 2713 3161 -111 720 249 103 28 chr1 214175688 214175901 -68017763 - MIR SINE MIR 0 262 34 292 327 10 39 chr1 214177802 214177906 -68015758 - L2 LINE L2 -4 3268 3168 2386 101 0 0 chr1 214178860 214179166 -68014498 + AluSp SINE Alu 2 307 -6 302 176 27 0 chr1 214179600 214179674 -68013990 + (CACCAT)n Simple_repeat Simple_repeat 5 80 0 26 0 0 0 chr1 214179811 214179837 -68013827 + AT_rich Low_complexity Low_complexity 1 26 0 248 235 0 0 chr1 214180224 214180275 -68013389 - L2 LINE L2 0 3272 3222 467 273 171 16 chr1 214180389 214180576 -68013088 - MIR SINE MIR -21 241 26 522 235 42 0 chr1 214180585 214180704 -68012960 + MIR SINE MIR 139 262 0 1558 138 6 119 chr1 214180876 214181195 -68012469 + AluJb SINE Alu 8 290 -22 3727 167 97 43 chr1 214182352 214183114 -68010550 + MER21B LTR ERV1 1 803 -60 3538 42 0 11 chr1 214185071 214185524 -68008140 + LTR7 LTR ERV1 1 448 -2 16927 99 19 32 chr1 214185526 214188677 -68004987 + HERVH LTR ERV1 1 2995 -4718 973 120 7 0 chr1 214188656 214188806 -68004858 + HERVH LTR ERV1 3140 3290 -4423 * 3395 111 0 6 chr1 214188796 214189301 -68004363 + HERVH LTR ERV1 3492 3993 -3720 4321 136 5 1 chr1 214189303 214189963 -68003701 + HERVH LTR ERV1 4488 5149 -2564 1439 120 19 0 chr1 214189964 214190180 -68003484 + HERVH LTR ERV1 5600 5819 -1894 * 2590 63 45 13 chr1 214190178 214190558 -68003106 + HERVH LTR ERV1 7322 7713 0 3509 47 0 7 chr1 214190558 214191009 -68002655 + LTR7 LTR ERV1 1 448 -2 736 235 44 25 chr1 214191873 214192077 -68001587 - MER3 DNA MER1_type 0 209 2 231 387 35 86 chr1 214193541 214193856 -67999808 + L2 LINE L2 2934 3232 -40 222 350 58 42 chr1 214194434 214194554 -67999110 - L2 LINE L2 -2 3311 3190 1168 167 114 0 chr1 214194839 214195066 -67998598 - L1PB3 LINE L1 -3 6151 5899 210 297 16 0 chr1 214195227 214195291 -67998373 + MIR SINE MIR 65 129 -133 1795 228 31 34 chr1 214195302 214195749 -67997915 + MER21B LTR ERV1 1 446 -417 1679 202 42 25 chr1 214195774 214196131 -67997533 - MER21B LTR ERV1 -12 851 489 414 216 0 170 chr1 214196132 214196274 -67997390 + MER21B LTR ERV1 384 573 -358 1103 269 53 9 chr1 214196340 214196660 -67997004 + MER21B LTR ERV1 460 793 -70 333 325 66 59 chr1 214196845 214197065 -67996599 - L3b LINE CR1 -137 1446 1222 2264 103 7 7 chr1 214197065 214197375 -67996289 - AluSx SINE Alu 0 312 3 333 325 66 59 chr1 214197375 214197474 -67996190 - L3b LINE CR1 -361 1222 1125 975 94 0 0 chr1 214198133 214198260 -67995404 + AluSg SINE Alu 1 127 -183 1907 100 8 0 chr1 214198260 214198519 -67995145 + AluSp SINE Alu 35 295 -18 393 304 40 48 chr1 214200149 214200376 -67993288 - HAL1b LINE L1 -653 695 471 423 178 14 0 chr1 214200396 214200469 -67993195 - LTR67 LTR ERVL 0 557 484 2094 106 0 7 chr1 214201352 214201688 -67991976 - AluSc SINE Alu 0 334 1 1068 187 79 35 chr1 214201734 214202078 -67991586 + MSTD LTR MaLR 1 396 0 24 67 0 0 chr1 214202877 214202922 -67990742 + AT_rich Low_complexity Low_complexity 1 45 0 353 321 107 12 chr1 214203854 214204022 -67989642 - MER5A DNA MER1_type -5 184 1 27 29 0 0 chr1 214205124 214205158 -67988506 + AT_rich Low_complexity Low_complexity 1 34 0 1752 108 0 0 chr1 214206429 214206680 -67986984 - L1PA8A LINE L1 0 6131 5881 317 200 136 27 chr1 214206927 214207037 -67986627 + L1ME4a LINE L1 5963 6084 -37 27 73 0 0 chr1 214207049 214207104 -67986560 + AT_rich Low_complexity Low_complexity 1 55 0 671 166 153 12 chr1 214207174 214207337 -67986327 - MER53 DNA DNA 0 189 4 364 304 52 37 chr1 214207347 214207482 -67986182 + MIR3 SINE MIR 61 197 -11 290 274 15 52 chr1 214207491 214207626 -67986038 + LTR16A LTR ERVL 143 272 -178 353 333 55 33 chr1 214208081 214208264 -67985400 + MIR3 SINE MIR 21 207 -1 333 0 0 0 chr1 214208343 214208380 -67985284 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 74 0 0 chr1 214210245 214210272 -67983392 + (TAA)n Simple_repeat Simple_repeat 2 28 0 652 279 10 39 chr1 214210273 214210481 -67983183 - MIR SINE MIR -7 255 54 22 0 0 0 chr1 214211341 214211363 -67982301 + AT_rich Low_complexity Low_complexity 1 22 0 335 277 36 10 chr1 214212128 214212251 -67981413 - MIR SINE MIR -5 203 76 426 327 9 14 chr1 214213358 214213575 -67980089 + L2 LINE L2 2825 3040 -273 603 295 18 0 chr1 214213692 214213858 -67979806 + MER69A DNA AcHobo 1 169 -8 409 214 10 29 chr1 214213882 214213985 -67979679 + L2 LINE L2 3149 3249 -64 207 0 0 0 chr1 214214249 214214272 -67979392 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 353 293 41 0 chr1 214214461 214214584 -67979080 - MER104 DNA Tc2 -6 174 47 1532 33 0 0 chr1 214214889 214215069 -67978595 + AluY SINE Alu 132 311 0 741 306 0 6 chr1 214216457 214216640 -67977024 - MER5A DNA MER1_type -1 188 7 212 167 71 0 chr1 214217201 214217243 -67976421 + L2 LINE L2 3200 3244 -69 322 312 29 58 chr1 214217396 214217534 -67976130 + MER5A DNA MER1_type 21 154 -35 21 0 0 0 chr1 214217751 214217772 -67975892 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr1 214218695 214218731 -67974933 + AT_rich Low_complexity Low_complexity 1 36 0 496 275 132 18 chr1 214219415 214219582 -67974082 - MIR SINE MIR -56 206 21 43 20 0 0 chr1 214220163 214220213 -67973451 + AT_rich Low_complexity Low_complexity 1 50 0 2037 200 29 74 chr1 214220684 214221263 -67972401 + MLT2B3 LTR ERVL 2 554 0 840 237 82 5 chr1 214222068 214222262 -67971402 + MER63A DNA MER1_type 1 209 -1 419 176 108 29 chr1 214222409 214222540 -67971124 + MLT1J1 LTR MaLR 225 391 -52 401 306 111 19 chr1 214222790 214223006 -67970658 - MIR SINE MIR -9 253 18 240 178 0 22 chr1 214223041 214223086 -67970578 - L2 LINE L2 -9 3304 3261 270 176 0 0 chr1 214223200 214223251 -67970413 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 53 0 0 chr1 214224354 214224392 -67969272 + AT_rich Low_complexity Low_complexity 1 38 0 243 157 78 0 chr1 214225459 214225510 -67968154 + L2 LINE L2 3216 3270 -2 190 341 22 33 chr1 214226325 214226416 -67967248 - MIR SINE MIR -78 184 95 489 356 38 21 chr1 214226961 214227200 -67966464 - MIR SINE MIR -18 244 2 23 54 0 0 chr1 214227857 214227894 -67965770 + AT_rich Low_complexity Low_complexity 1 37 0 2289 116 0 0 chr1 214228419 214228729 -67964935 + AluSg SINE Alu 1 310 0 23 0 0 0 chr1 214229498 214229521 -67964143 + AT_rich Low_complexity Low_complexity 1 23 0 261 121 30 15 chr1 214230421 214230487 -67963177 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 297 301 71 71 chr1 214231683 214231952 -67961712 - L2 LINE L2 -351 2963 2695 22 0 0 0 chr1 214232316 214232338 -67961326 + AT_rich Low_complexity Low_complexity 1 22 0 313 229 0 0 chr1 214233376 214233437 -67960227 - MIR3 SINE MIR -27 181 121 394 321 8 15 chr1 214233872 214234006 -67959658 + L2 LINE L2 3168 3300 -13 225 323 0 15 chr1 214234006 214234071 -67959593 + polypurine Low_complexity Low_complexity 1 64 0 22 0 0 0 chr1 214234232 214234254 -67959410 + AT_rich Low_complexity Low_complexity 1 22 0 278 277 138 38 chr1 214234482 214234641 -67959023 - MIR SINE MIR -21 241 67 293 147 0 29 chr1 214236439 214236507 -67957157 + (CATA)n Simple_repeat Simple_repeat 2 67 0 611 0 27 0 chr1 214236834 214236908 -67956756 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chr1 214237036 214237060 -67956604 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 214237162 214237190 -67956474 + AT_rich Low_complexity Low_complexity 1 28 0 183 346 39 0 chr1 214237660 214237738 -67955926 - MIR SINE MIR -2 260 180 211 140 40 0 chr1 214237939 214237989 -67955675 + GA-rich Low_complexity Low_complexity 2 53 0 646 229 107 16 chr1 214239695 214240005 -67953659 - MER69 DNA AcHobo 0 2526 2173 253 265 15 0 chr1 214240016 214240084 -67953580 - MER69 DNA AcHobo -1706 820 752 * 662 308 69 5 chr1 214240072 214240307 -67953357 - MER69 DNA AcHobo -971 255 8 195 378 152 5 chr1 214241535 214241739 -67951925 - L2 LINE L2 -107 3165 2932 323 284 107 41 chr1 214242770 214242939 -67950725 - L1ME4a LINE L1 -65 6056 5877 2347 72 7 3 chr1 214243052 214243345 -67950319 + AluY SINE Alu 1 294 -17 21 0 0 0 chr1 214244562 214244583 -67949081 + AT_rich Low_complexity Low_complexity 1 21 0 1966 253 20 0 chr1 214244592 214245094 -67948570 + L1ME3A LINE L1 5451 5962 -208 1419 80 0 0 chr1 214245124 214245311 -67948353 - AluY SINE Alu -1 310 124 755 214 87 19 chr1 214245311 214245517 -67948147 + L1ME3A LINE L1 5951 6170 0 23 54 0 0 chr1 214245754 214245791 -67947873 + AT_rich Low_complexity Low_complexity 1 37 0 383 259 0 19 chr1 214245823 214245931 -67947733 - MER104 DNA Tc2 -17 163 58 42614 34 21 1 chr1 214245953 214251994 -67941670 + L1PA2 LINE L1 4 6168 0 290 323 158 47 chr1 214252238 214252600 -67941064 - L2 LINE L2 -349 2965 2564 21 57 0 0 chr1 214254251 214254286 -67939378 + AT_rich Low_complexity Low_complexity 1 35 0 651 296 102 77 chr1 214254654 214255483 -67938181 + L1MEc LINE L1 78 927 -5469 278 213 75 11 chr1 214255474 214255568 -67938096 + L1ME2 LINE L1 5394 5493 -673 * 1218 230 81 31 chr1 214255574 214255996 -67937668 + L1ME2 LINE L1 5688 6130 -34 1760 206 88 109 chr1 214257612 214258373 -67935291 + LTR1B LTR ERV1 1 745 -81 380 309 16 41 chr1 214258557 214258680 -67934984 - L2 LINE L2 -3 3269 3150 368 351 137 14 chr1 214259310 214259660 -67934004 + L2 LINE L2 564 956 -2358 232 287 119 10 chr1 214259632 214259733 -67933931 + L2 LINE L2 3202 3313 0 * 1792 182 0 3 chr1 214259816 214260112 -67933552 + AluJb SINE Alu 1 295 -17 243 298 0 0 chr1 214260490 214260547 -67933117 - L2 LINE L2 -3 3269 3213 6813 170 27 48 chr1 214260601 214261301 -67932363 + L1PB4 LINE L1 3700 4413 -1743 1489 157 11 0 chr1 214261301 214261551 -67932113 + L1PA13 LINE L1 5891 6160 -3 6813 170 27 48 chr1 214261551 214263365 -67930299 + L1PB4 LINE L1 4413 6156 0 274 269 50 0 chr1 214264054 214264173 -67929491 - L1ME4a LINE L1 -51 6070 5946 34 99 0 0 chr1 214264239 214264350 -67929314 + AT_rich Low_complexity Low_complexity 1 111 0 23 0 0 0 chr1 214265666 214265689 -67927975 + AT_rich Low_complexity Low_complexity 1 23 0 479 244 233 12 chr1 214267784 214267956 -67925708 - MIR SINE MIR -51 211 2 550 271 80 67 chr1 214267958 214268041 -67925623 + LTR33 LTR ERVL 1 81 -440 2226 82 17 7 chr1 214268041 214268333 -67925331 - AluSc SINE Alu -12 297 3 550 271 80 67 chr1 214268333 214268474 -67925190 + LTR33 LTR ERVL 81 228 -293 1365 70 5 0 chr1 214268539 214268725 -67924939 + L1MA1 LINE L1 6116 6302 0 24 0 0 0 chr1 214269242 214269266 -67924398 + AT_rich Low_complexity Low_complexity 1 24 0 518 300 20 0 chr1 214269861 214270011 -67923653 - MIR SINE MIR 0 262 110 29 47 0 0 chr1 214270529 214270572 -67923092 + AT_rich Low_complexity Low_complexity 1 43 0 2195 142 5 39 chr1 214270577 214270965 -67922699 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr1 214271113 214271136 -67922528 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2221 107 0 0 chr1 214271208 214271499 -67922165 - AluSg SINE Alu -19 291 1 452 105 0 58 chr1 214272349 214272435 -67921229 + L1PA8 LINE L1 6089 6169 -3 2556 59 0 7 chr1 214272584 214272890 -67920774 + AluY SINE Alu 3 306 -5 21 0 0 0 chr1 214272942 214272963 -67920701 + AT_rich Low_complexity Low_complexity 1 21 0 447 19 0 0 chr1 214273656 214273708 -67919956 + (TG)n Simple_repeat Simple_repeat 1 52 0 794 297 33 42 chr1 214273838 214274168 -67919496 + MLT1H LTR MaLR 21 347 -202 331 203 64 12 chr1 214274196 214274304 -67919360 + MLT1F LTR MaLR 464 542 0 21 0 0 0 chr1 214275048 214275069 -67918595 + AT_rich Low_complexity Low_complexity 1 21 0 545 297 88 48 chr1 214275069 214275525 -67918139 + L2 LINE L2 1284 3145 -168 347 313 18 23 chr1 214275641 214275858 -67917806 - L1ME4a LINE L1 -198 5923 5708 878 336 61 24 chr1 214276089 214276580 -67917084 - HERVL LTR ERVL -2337 3317 2809 213 349 185 13 chr1 214276646 214277019 -67916645 + L2 LINE L2 2238 2674 -640 26 50 0 0 chr1 214277154 214277194 -67916470 + AT_rich Low_complexity Low_complexity 1 40 0 283 291 77 8 chr1 214277322 214277439 -67916225 + L2 LINE L2 3184 3308 -5 693 194 23 0 chr1 214278679 214278808 -67914856 + FLAM_A SINE Alu 1 132 -1 1646 148 17 41 chr1 214279317 214279628 -67914036 + AluSx SINE Alu 1 304 0 665 129 123 39 chr1 214279646 214279920 -67913744 + Charlie5 DNA MER1_type 1 2623 0 415 155 0 63 chr1 214280126 214280268 -67913396 + (CA)n Simple_repeat Simple_repeat 2 134 0 1027 162 71 146 chr1 214280537 214280874 -67912790 + AluJb SINE Alu 1 314 0 374 352 69 23 chr1 214281051 214281267 -67912397 - MIR SINE MIR -13 249 24 219 69 0 0 chr1 214281793 214281822 -67911842 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr1 214282111 214282133 -67911531 + AT_rich Low_complexity Low_complexity 1 22 0 2165 98 7 3 chr1 214282779 214283076 -67910588 - AluSx SINE Alu -9 303 6 381 266 91 19 chr1 214284631 214284785 -67908879 + L3 LINE CR1 839 1003 -574 236 326 12 23 chr1 214284890 214284976 -67908688 + L3 LINE CR1 1490 1574 -3 343 313 93 37 chr1 214286236 214286450 -67907214 + MIR SINE MIR 7 232 -30 414 0 0 0 chr1 214286662 214286708 -67906956 + (TG)n Simple_repeat Simple_repeat 2 47 0 184 304 94 36 chr1 214287083 214287221 -67906443 - L3b LINE CR1 -115 1468 1323 206 382 57 8 chr1 214289104 214289227 -67904437 - L2 LINE L2 0 3272 3144 25 83 0 0 chr1 214289502 214289562 -67904102 + AT_rich Low_complexity Low_complexity 1 60 0 186 43 0 0 chr1 214289761 214289784 -67903880 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 907 333 114 54 chr1 214290040 214291312 -67902352 - L2 LINE L2 -360 2954 1760 1748 173 3 13 chr1 214291312 214291618 -67902046 - AluJo SINE Alu -9 303 1 907 333 114 54 chr1 214291618 214292610 -67901054 - L2 LINE L2 -1554 1760 551 296 185 19 0 chr1 214292922 214292976 -67900688 - MER58 DNA MER1_type -70 271 217 269 87 22 0 chr1 214293648 214293694 -67899970 + L1MD3 LINE L1 7940 7986 -9 2235 100 7 10 chr1 214293765 214294075 -67899589 + AluSx SINE Alu 1 309 -3 400 247 0 24 chr1 214296210 214296295 -67897369 - MIR3 SINE MIR -23 185 103 1483 149 3 104 chr1 214296541 214296869 -67896795 - AluJo SINE Alu -6 296 2 325 85 43 0 chr1 214296875 214296922 -67896742 - FLAM SINE Alu 0 133 85 291 329 136 19 chr1 214297019 214297174 -67896490 - L2 LINE L2 -4 3268 3096 22 0 0 0 chr1 214298994 214299016 -67894648 + AT_rich Low_complexity Low_complexity 1 22 0 885 334 60 28 chr1 214300557 214301243 -67892421 + MER45C DNA AcHobo 39 777 -176 565 178 25 8 chr1 214301308 214301426 -67892238 - MER45B DNA AcHobo -199 841 722 23 92 0 0 chr1 214301738 214301803 -67891861 + AT_rich Low_complexity Low_complexity 1 65 0 2991 107 24 17 chr1 214302125 214302221 -67891443 + L1PA15 LINE L1 5689 5783 -382 200 59 29 0 chr1 214302221 214302255 -67891409 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 234 0 0 0 chr1 214302254 214302280 -67891384 + (CA)n Simple_repeat Simple_repeat 2 27 0 2991 107 24 17 chr1 214302255 214302652 -67891012 + L1PA15 LINE L1 5783 6160 -5 22 0 0 0 chr1 214302828 214302850 -67890814 + AT_rich Low_complexity Low_complexity 1 22 0 1789 233 74 60 chr1 214304522 214305102 -67888562 + MLT1E LTR MaLR 1 588 -5 265 327 82 19 chr1 214306078 214306286 -67887378 - L2 LINE L2 -21 3292 3072 431 296 87 35 chr1 214306317 214306776 -67886888 - L1M4 LINE L1 -788 5358 4876 835 278 108 60 chr1 214306796 214306968 -67886696 - L1M4 LINE L1 -1322 4824 4662 2181 109 13 0 chr1 214306968 214307272 -67886392 - AluSx SINE Alu -4 308 1 835 278 108 60 chr1 214307272 214308184 -67885480 - L1M4 LINE L1 -1484 4662 3688 1616 156 19 4 chr1 214308383 214308653 -67885011 - AluJb SINE Alu -15 297 24 6338 84 15 4 chr1 214308653 214309979 -67883685 + L1PA8A LINE L1 4761 6103 -28 268 124 67 50 chr1 214310011 214310071 -67883593 - AluJb SINE Alu -261 41 3 317 269 195 23 chr1 214310397 214310884 -67882780 - L1M4 LINE L1 -3131 3015 2445 822 313 116 18 chr1 214311008 214311691 -67881973 - HAL1b LINE L1 -504 844 95 2121 68 15 0 chr1 214312088 214312353 -67881311 - AluY SINE Alu -4 307 39 229 257 119 37 chr1 214313131 214313240 -67880424 - MIR SINE MIR -16 246 129 22 35 0 0 chr1 214313904 214313933 -67879731 + AT_rich Low_complexity Low_complexity 1 29 0 320 317 134 31 chr1 214313964 214314188 -67879476 + MIR SINE MIR 10 256 -6 378 291 118 9 chr1 214314459 214314569 -67879095 + MIR SINE MIR 20 141 -121 398 269 150 42 chr1 214314989 214315182 -67878482 + MIR SINE MIR 8 221 -41 384 289 128 16 chr1 214316155 214316404 -67877260 + L1ME4a LINE L1 5818 6094 -27 24 32 0 0 chr1 214316623 214316654 -67877010 + AT_rich Low_complexity Low_complexity 1 31 0 2717 133 32 11 chr1 214316903 214317371 -67876293 - L1MC1 LINE L1 -9 6324 5847 251 93 23 0 chr1 214318221 214318264 -67875400 + (TA)n Simple_repeat Simple_repeat 2 45 0 188 321 44 58 chr1 214319795 214319932 -67873732 + L3 LINE CR1 109 243 -1334 2193 83 7 0 chr1 214320034 214320312 -67873352 - AluSq SINE Alu -16 297 18 474 313 84 47 chr1 214320588 214320885 -67872779 + L3 LINE CR1 891 1198 -379 277 286 57 0 chr1 214320933 214321003 -67872661 + L3 LINE CR1 1326 1399 -178 186 321 81 65 chr1 214321787 214322220 -67871444 + L2 LINE L2 2813 3252 -20 492 193 0 79 chr1 214322238 214322352 -67871312 - L2 LINE L2 -14 3299 3195 184 338 15 0 chr1 214323766 214323834 -67869830 - L2 LINE L2 0 3313 3245 2235 98 0 0 chr1 214324307 214324593 -67869071 + AluSx SINE Alu 14 299 -13 29 0 0 0 chr1 214324593 214324622 -67869042 + AT_rich Low_complexity Low_complexity 1 29 0 274 280 136 30 chr1 214326106 214326238 -67867426 - L2 LINE L2 0 3313 3168 868 169 48 87 chr1 214327665 214327896 -67865768 - AluJo SINE Alu -8 304 83 315 0 0 0 chr1 214328596 214328631 -67865033 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 285 60 7 chr1 214329761 214329912 -67863752 + (TATATG)n Simple_repeat Simple_repeat 4 162 0 975 213 0 46 chr1 214330760 214330912 -67862752 - AluJb SINE Alu -23 289 148 1794 166 0 3 chr1 214330912 214331201 -67862463 - AluSx SINE Alu -3 309 22 975 213 0 46 chr1 214331201 214331264 -67862400 - AluJb SINE Alu -164 148 84 23 0 0 0 chr1 214331276 214331299 -67862365 + AT_rich Low_complexity Low_complexity 1 23 0 248 328 0 16 chr1 214331744 214331866 -67861798 + (TATATG)n Simple_repeat Simple_repeat 1 120 0 24 0 0 0 chr1 214332450 214332474 -67861190 + AT_rich Low_complexity Low_complexity 1 24 0 1093 162 0 6 chr1 214332719 214332886 -67860778 - AluJb SINE Alu -10 302 137 712 257 147 0 chr1 214332971 214333189 -67860475 + MIR SINE MIR 3 252 -10 194 0 39 0 chr1 214333192 214333218 -67860446 + (TTA)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr1 214335151 214335179 -67858485 + AT_rich Low_complexity Low_complexity 1 28 0 381 275 125 0 chr1 214335408 214335528 -67858136 - MIR3 SINE MIR -8 200 66 264 77 0 0 chr1 214336057 214336096 -67857568 + (T)n Simple_repeat Simple_repeat 1 39 0 1250 344 97 35 chr1 214336290 214337861 -67855803 + L2 LINE L2 1609 3270 -2 22 35 0 0 chr1 214338406 214338435 -67855229 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 214338661 214338684 -67854980 + AT_rich Low_complexity Low_complexity 1 23 0 209 268 8 114 chr1 214338696 214338819 -67854845 - MIR SINE MIR -49 213 104 4041 264 84 56 chr1 214338877 214341289 -67852375 + L1M2 LINE L1 3 2750 -4098 2857 3 0 0 chr1 214341289 214341600 -67852064 - AluYa5 SINE Alu 0 311 1 4041 264 84 56 chr1 214341600 214341704 -67851960 + L1M2 LINE L1 2750 2850 -3998 1307 201 23 34 chr1 214341704 214341968 -67851696 + AluJo SINE Alu 27 287 -25 4364 153 21 60 chr1 214341969 214342629 -67851035 + L1PB3 LINE L1 5180 5864 -290 282 29 0 0 chr1 214342629 214342664 -67851000 + (CA)n Simple_repeat Simple_repeat 2 36 0 4364 153 21 60 chr1 214342664 214342906 -67850758 + L1PB3 LINE L1 5864 6040 -114 1668 169 86 13 chr1 214342906 214343220 -67850444 + MER1B DNA MER1_type 1 337 0 4364 153 21 60 chr1 214343220 214343328 -67850336 + L1PB3 LINE L1 6040 6151 -3 308 292 73 0 chr1 214343381 214343477 -67850187 - L2 LINE L2 -1 3271 3169 3042 72 10 133 chr1 214344470 214344987 -67848677 + MLT2A2 LTR ERVL 1 453 0 2264 191 95 2 chr1 214345680 214346142 -67847522 + MLT1D LTR MaLR 1 505 0 31 44 0 0 chr1 214346689 214346734 -67846930 + AT_rich Low_complexity Low_complexity 1 45 0 237 264 98 80 chr1 214347153 214347316 -67846348 + L2 LINE L2 3144 3309 -4 1931 123 11 7 chr1 214347538 214347847 -67845817 - AluSq SINE Alu 0 310 1 320 333 228 9 chr1 214348005 214348224 -67845440 - L2 LINE L2 -11 3261 2995 231 36 0 0 chr1 214348390 214348418 -67845246 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 603 284 76 0 chr1 214348483 214348680 -67844984 + MER20 DNA MER1_type 8 219 0 23 0 0 0 chr1 214350206 214350229 -67843435 + AT_rich Low_complexity Low_complexity 1 23 0 298 349 32 0 chr1 214351337 214351463 -67842201 + MIR SINE MIR 23 152 -110 369 109 0 0 chr1 214352092 214352147 -67841517 + (CA)n Simple_repeat Simple_repeat 2 56 0 1363 190 238 11 chr1 214354076 214354518 -67839146 + L1ME2 LINE L1 5609 6150 -14 41752 61 1 2 chr1 214354783 214360938 -67832726 + L1PA5 LINE L1 1 6154 0 2248 94 17 0 chr1 214361540 214361838 -67831826 + AluSc SINE Alu 1 303 -6 315 0 0 0 chr1 214362807 214362842 -67830822 + (CA)n Simple_repeat Simple_repeat 2 36 0 201 182 39 39 chr1 214363100 214363177 -67830487 + (TAAA)n Simple_repeat Simple_repeat 2 78 0 1167 136 12 0 chr1 214363856 214364018 -67829646 - FAM SINE Alu -11 174 11 271 366 13 59 chr1 214364092 214364245 -67829419 + MIR3 SINE MIR 6 151 -57 414 266 107 44 chr1 214365567 214365825 -67827839 - MLT1K LTR MaLR -1 587 332 335 217 0 0 chr1 214365890 214365950 -67827714 - MLT1L LTR MaLR -407 208 149 1072 221 28 0 chr1 214365951 214366164 -67827500 - MER20 DNA MER1_type 0 219 1 1463 171 100 55 chr1 214366210 214366589 -67827075 + MSTD LTR MaLR 1 396 0 450 333 144 20 chr1 214366833 214367280 -67826384 + L2 LINE L2 2488 2987 -285 1957 225 100 20 chr1 214369199 214369697 -67823967 + MLT1H LTR MaLR 12 549 0 1776 195 3 0 chr1 214369822 214370119 -67823545 - AluJb SINE Alu -14 298 1 274 346 47 19 chr1 214370377 214370484 -67823180 - MIR SINE MIR -87 121 11 817 144 0 0 chr1 214370503 214370621 -67823043 - FLAM_C SINE Alu -15 118 1 661 320 135 67 chr1 214372378 214373150 -67820514 - L1MEd LINE L1 -5295 824 1 21 0 0 0 chr1 214373206 214373227 -67820437 + AT_rich Low_complexity Low_complexity 1 21 0 754 195 157 0 chr1 214373414 214373573 -67820091 - MER5A DNA MER1_type -5 184 1 640 327 19 64 chr1 214373580 214373846 -67819818 + MIR SINE MIR 9 262 0 308 339 25 0 chr1 214375490 214375608 -67818056 + MIR SINE MIR 85 205 -57 23 54 0 0 chr1 214377424 214377461 -67816203 + AT_rich Low_complexity Low_complexity 1 37 0 829 323 28 8 chr1 214378295 214378543 -67815121 + MIR SINE MIR 8 260 -2 495 290 8 0 chr1 214378635 214378759 -67814905 + L2 LINE L2 3185 3309 -4 190 321 12 0 chr1 214379560 214379641 -67814023 - L2 LINE L2 -5 3308 3227 333 278 179 26 chr1 214380326 214380477 -67813187 + MIR SINE MIR 40 213 -49 180 291 0 0 chr1 214380522 214380601 -67813063 + GA-rich Low_complexity Low_complexity 2 80 0 2078 150 0 0 chr1 214380625 214380931 -67812733 - AluJb SINE Alu -6 306 1 460 321 164 48 chr1 214381508 214382012 -67811652 - L2 LINE L2 0 3313 2690 2269 103 7 0 chr1 214382012 214382312 -67811352 + AluSq SINE Alu 1 302 -11 460 321 164 48 chr1 214382312 214382540 -67811124 - L2 LINE L2 -623 2690 2490 196 202 232 20 chr1 214382683 214382782 -67810882 - MIR SINE MIR -6 256 137 615 215 0 0 chr1 214383272 214383379 -67810285 + FAM SINE Alu 46 152 -33 319 315 85 6 chr1 214384024 214384189 -67809475 + L1M4 LINE L1 2443 2620 -3526 891 240 58 0 chr1 214384201 214384409 -67809255 - MIR SINE MIR -30 232 13 1445 179 8 0 chr1 214384410 214384650 -67809014 - AluJb SINE Alu -3 309 68 3586 161 19 0 chr1 214384958 214385573 -67808091 - L1MA7 LINE L1 -235 6056 5430 323 235 139 53 chr1 214385586 214385960 -67807704 + L1M4 LINE L1 2894 3299 -2847 1115 286 57 25 chr1 214386031 214386590 -67807074 - L1M4 LINE L1 -2079 4067 3491 277 241 62 62 chr1 214386679 214386841 -67806823 + L1MEd LINE L1 12 173 -5946 341 330 68 31 chr1 214387198 214387389 -67806275 + L1MEd LINE L1 602 799 -5320 677 287 100 25 chr1 214387449 214388106 -67805558 + L1MEd LINE L1 895 1690 -800 385 337 52 9 chr1 214388581 214388907 -67804757 + L1MEd LINE L1 2229 2568 -3561 1107 266 102 39 chr1 214389057 214389467 -67804197 - L2 LINE L2 -20 3293 2858 646 308 70 10 chr1 214389547 214389849 -67803815 - L2 LINE L2 -708 2606 2287 638 238 30 24 chr1 214390135 214390303 -67803361 - MER63A DNA MER1_type -36 174 6 258 278 42 0 chr1 214390313 214390385 -67803279 - MIR SINE MIR -113 149 75 497 298 28 64 chr1 214390435 214390686 -67802978 - MIR SINE MIR -18 244 2 234 0 0 0 chr1 214391224 214391250 -67802414 + (A)n Simple_repeat Simple_repeat 1 26 0 2179 125 0 3 chr1 214391665 214391962 -67801702 + AluSx SINE Alu 1 296 -16 2605 163 43 9 chr1 214392199 214392378 -67801286 + MLT1C LTR MaLR 1 172 -295 2047 135 6 6 chr1 214392378 214392690 -67800974 + AluSx SINE Alu 1 312 0 2605 163 43 9 chr1 214392690 214392952 -67800712 + MLT1C LTR MaLR 172 457 -10 347 234 149 0 chr1 214392978 214393072 -67800592 - MIR SINE MIR -135 127 20 347 329 168 19 chr1 214393091 214393465 -67800199 + L2 LINE L2 1793 2222 -1092 301 258 140 48 chr1 214394310 214394496 -67799168 + L2 LINE L2 2585 2787 -527 203 310 23 85 chr1 214394517 214394646 -67799018 + L2 LINE L2 2993 3113 -159 216 281 0 16 chr1 214394715 214394779 -67798885 + L2 LINE L2 3210 3272 0 2429 63 3 19 chr1 214394992 214395308 -67798356 + AluY SINE Alu 1 311 0 226 167 0 0 chr1 214396071 214396113 -67797551 - L2 LINE L2 0 3313 3272 255 331 141 21 chr1 214397065 214397207 -67796457 - MIR3 SINE MIR -34 174 16 3596 259 73 26 chr1 214397429 214398009 -67795655 + L2 LINE L2 1805 2356 -957 1037 195 64 125 chr1 214398009 214398263 -67795401 - MSTB2 LTR MaLR 0 457 246 2149 137 0 0 chr1 214398263 214398570 -67795094 - AluSx SINE Alu -1 311 5 1037 195 64 125 chr1 214398570 214398802 -67794862 - MSTB2 LTR MaLR -211 246 1 3596 259 73 26 chr1 214398802 214399664 -67794000 + L2 LINE L2 2356 3313 0 2732 139 16 2 chr1 214399983 214400422 -67793242 + L1PA15 LINE L1 5721 6165 0 2073 163 8 31 chr1 214400547 214401155 -67792509 + L1MB8 LINE L1 5483 6177 -1 288 265 39 53 chr1 214401647 214401803 -67791861 - MIR3 SINE MIR -7 201 82 1789 157 20 3 chr1 214401850 214402143 -67791521 + AluJb SINE Alu 15 312 0 193 161 0 54 chr1 214402982 214403038 -67790626 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 580 247 71 7 chr1 214406336 214406490 -67787174 + MIR SINE MIR 8 171 -91 3287 218 66 26 chr1 214406495 214407874 -67785790 - L1MEc LINE L1 -3419 2796 1398 2178 264 65 16 chr1 214407909 214408660 -67785004 - L1MEc LINE L1 -5063 1333 546 262 281 21 31 chr1 214408668 214408764 -67784900 - LTR16C LTR ERVL -65 426 332 342 322 122 45 chr1 214409453 214409992 -67783672 - L2 LINE L2 -1 3271 2612 486 285 24 0 chr1 214410004 214410127 -67783537 - MIR SINE MIR -120 142 17 346 188 125 52 chr1 214411939 214412035 -67781629 - MIR3 SINE MIR -23 185 83 525 208 45 144 chr1 214412106 214412158 -67781506 - MIR SINE MIR -2 260 204 267 31 0 0 chr1 214412158 214412190 -67781474 + (TA)n Simple_repeat Simple_repeat 2 33 0 2212 125 0 0 chr1 214412190 214412486 -67781178 - AluSx SINE Alu -16 296 1 525 208 45 144 chr1 214412486 214412634 -67781030 - MIR SINE MIR -56 206 79 234 245 0 43 chr1 214413175 214413269 -67780395 + L1MC4 LINE L1 6614 6703 -1339 * 248 228 65 11 chr1 214413265 214413357 -67780307 - L1MC4 LINE L1 -1339 6703 6607 227 311 0 0 chr1 214413321 214413411 -67780253 + L1MC4 LINE L1 6614 6703 -1339 * 225 174 0 0 chr1 214413383 214413429 -67780235 - L1MC4 LINE L1 -1339 6703 6658 * 267 103 0 0 chr1 214413429 214413468 -67780196 + (CA)n Simple_repeat Simple_repeat 2 40 0 468 188 0 0 chr1 214413470 214413550 -67780114 - FLAM_A SINE Alu -21 121 42 295 290 38 57 chr1 214413602 214413789 -67779875 - MIR SINE MIR -38 224 45 22 56 0 0 chr1 214414003 214414039 -67779625 + AT_rich Low_complexity Low_complexity 1 36 0 373 358 135 0 chr1 214414366 214414573 -67779091 - L3b LINE CR1 -90 1493 1259 2174 154 60 113 chr1 214414820 214415448 -67778216 + L1MC3 LINE L1 6500 7094 -691 323 253 58 0 chr1 214415449 214415536 -67778128 + MLT1F1 LTR MaLR 34 125 -442 813 167 93 0 chr1 214415549 214415699 -67777965 + L1MC3 LINE L1 7203 7366 -419 1200 167 118 0 chr1 214415707 214415970 -67777694 + L1MC3 LINE L1 7483 7776 -9 2715 125 13 22 chr1 214416117 214416566 -67777098 - MER65A LTR ERV1 0 445 1 238 330 117 0 chr1 214419089 214419192 -67774472 + L2 LINE L2 3158 3272 0 432 307 217 5 chr1 214419265 214419477 -67774187 + MIR SINE MIR 2 258 -4 31 0 0 0 chr1 214421113 214421144 -67772520 + AT_rich Low_complexity Low_complexity 1 31 0 1867 175 10 0 chr1 214421832 214422141 -67771523 + AluJb SINE Alu 1 312 0 264 59 0 0 chr1 214422250 214422284 -67771380 + (CA)n Simple_repeat Simple_repeat 1 34 0 477 0 0 0 chr1 214423116 214423169 -67770495 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 189 309 0 0 chr1 214423266 214423308 -67770356 + L3 LINE CR1 328 369 -1208 1124 315 75 42 chr1 214423309 214423881 -67769783 + L3 LINE CR1 612 1202 -375 1615 241 132 33 chr1 214424122 214424637 -67769027 + MLT1G1 LTR MaLR 27 592 -3 359 322 81 3 chr1 214424809 214425086 -67768578 - L1MC4a LINE L1 -356 5818 5623 210 384 7 43 chr1 214425362 214425500 -67768164 + L3 LINE CR1 1296 1428 -149 43836 38 1 7 chr1 214425710 214431890 -67761774 - L1PA3 LINE L1 -3 6152 13 864 73 139 15 chr1 214431925 214432062 -67761602 - MLT2A1 LTR ERVL -83 361 208 1799 216 58 20 chr1 214432089 214432538 -67761126 + MLT1C LTR MaLR 2 467 0 287 356 126 22 chr1 214432554 214432689 -67760975 + L3 LINE CR1 1418 1566 -11 21 0 0 0 chr1 214433041 214433062 -67760602 + AT_rich Low_complexity Low_complexity 1 21 0 249 351 11 0 chr1 214433492 214433586 -67760078 + MIR SINE MIR 162 256 -6 353 351 188 0 chr1 214433694 214433902 -67759762 + MIR SINE MIR 8 254 -8 1017 214 41 109 chr1 214434097 214434584 -67759080 + LTR37B LTR ERV1 6 459 -9 268 364 30 15 chr1 214435468 214435600 -67758064 + MIR3 SINE MIR 66 199 -9 271 286 0 0 chr1 214435809 214435872 -67757792 + MIR SINE MIR 51 113 -95 631 327 25 0 chr1 214436019 214436218 -67757446 + MIR SINE MIR 56 259 -3 401 285 84 28 chr1 214437131 214437345 -67756319 - MIR SINE MIR -15 247 17 452 227 169 19 chr1 214439054 214439208 -67754456 + MER5A DNA MER1_type 13 189 0 2910 195 33 8 chr1 214439379 214440010 -67753654 - L1MA9 LINE L1 -1000 5146 4500 2897 163 14 22 chr1 214440009 214440617 -67753047 + L1MA9 LINE L1 5177 5779 -533 * 1163 112 0 0 chr1 214440619 214440780 -67752884 + AluSg/x SINE Alu 149 309 -1 459 35 0 0 chr1 214440788 214440845 -67752819 + (CA)n Simple_repeat Simple_repeat 2 58 0 1773 215 35 35 chr1 214440847 214441326 -67752338 + L1MA9 LINE L1 5796 6274 -38 1587 171 11 38 chr1 214441365 214441652 -67752012 + AluJo SINE Alu 19 297 -15 1557 180 16 33 chr1 214441743 214442048 -67751616 + AluJo SINE Alu 1 300 -12 344 333 106 8 chr1 214442249 214442372 -67751292 - L2 LINE L2 0 3272 3138 724 269 158 21 chr1 214442372 214442939 -67750725 - L2 LINE L2 -2 3311 2678 213 301 133 0 chr1 214442941 214443024 -67750640 - L2 LINE L2 -749 2565 2472 445 179 116 9 chr1 214445359 214445471 -67748193 + FLAM_A SINE Alu 2 125 -8 817 218 5 51 chr1 214445639 214445836 -67747828 - MER5A DNA MER1_type -1 188 1 515 255 202 19 chr1 214445926 214446134 -67747530 + MIR SINE MIR 17 262 0 216 0 0 0 chr1 214446446 214446470 -67747194 + (A)n Simple_repeat Simple_repeat 1 24 0 234 279 87 29 chr1 214446732 214446836 -67746828 + L3b LINE CR1 1276 1385 -198 * 549 256 43 60 chr1 214446826 214447060 -67746604 - L2 LINE L2 -1 3312 3083 433 286 166 35 chr1 214447094 214447353 -67746311 - L2 LINE L2 -372 2942 2650 6039 138 28 23 chr1 214447928 214448098 -67745566 - Ricksha_a DNA DNA -2078 1173 1005 1801 173 0 23 chr1 214448098 214448398 -67745266 + AluJb SINE Alu 1 293 -19 6039 138 28 23 chr1 214448398 214449021 -67744643 - Ricksha_a DNA DNA -2246 1005 370 2214 121 0 3 chr1 214449021 214449326 -67744338 - AluSx SINE Alu -8 304 1 6039 138 28 23 chr1 214449326 214449697 -67743967 - Ricksha_a DNA DNA -2881 370 2 536 156 0 0 chr1 214449978 214450055 -67743609 + FRAM/FAM SINE Alu 1 76 -100 201 269 30 45 chr1 214450689 214450756 -67742908 + MER5A DNA MER1_type 44 109 -80 282 269 67 25 chr1 214451116 214451235 -67742429 + MER20 DNA MER1_type 90 213 -6 757 162 10 5 chr1 214451667 214451871 -67741793 + GA-rich Low_complexity Low_complexity 1 205 0 570 149 127 8 chr1 214451871 214452005 -67741659 + L1MA9 LINE L1 6163 6312 0 212 254 298 26 chr1 214452669 214452783 -67740881 + MIR3 SINE MIR 19 163 -45 1768 142 4 0 chr1 214454292 214454553 -67739111 + AluSx SINE Alu 11 272 -40 327 331 165 14 chr1 214454686 214454946 -67738718 + L2 LINE L2 2694 2986 -286 364 226 12 24 chr1 214454946 214455030 -67738634 - L2 LINE L2 0 3313 3231 509 210 42 34 chr1 214455163 214455401 -67738263 + L1MC5 LINE L1 7543 7782 -179 603 212 7 44 chr1 214455405 214455542 -67738122 + FLAM_A SINE Alu 1 132 -10 938 124 12 65 chr1 214455542 214455711 -67737953 + MSTC LTR MaLR 208 367 -61 21 0 0 0 chr1 214455711 214455732 -67737932 + AT_rich Low_complexity Low_complexity 1 21 0 247 272 57 123 chr1 214455904 214456132 -67737532 + L2 LINE L2 3033 3245 -27 246 258 0 16 chr1 214456264 214456326 -67737338 - L2 LINE L2 -1 3312 3252 690 66 0 0 chr1 214458121 214458248 -67735416 + L1PA3 LINE L1 6041 6167 0 304 282 12 12 chr1 214458704 214458789 -67734875 - L2 LINE L2 0 3272 3188 234 0 0 0 chr1 214459173 214459199 -67734465 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 255 313 38 69 chr1 214460488 214460619 -67733045 - MIR3 SINE MIR -1 207 81 21 57 0 0 chr1 214461414 214461449 -67732215 + AT_rich Low_complexity Low_complexity 1 35 0 314 307 68 45 chr1 214462558 214462734 -67730930 - MIR3 SINE MIR -14 194 15 426 184 184 15 chr1 214462958 214463094 -67730570 + MER103 DNA DNA 8 166 0 231 271 34 0 chr1 214463504 214463563 -67730101 - MIR SINE MIR -12 250 190 218 244 24 85 chr1 214463562 214463644 -67730020 - MIR SINE MIR -182 80 4 * 1950 132 7 27 chr1 214465317 214465613 -67728051 + AluSq SINE Alu 1 290 -23 456 265 16 43 chr1 214465629 214465886 -67727778 - HAL1 LINE L1 -1267 1240 991 1223 253 14 37 chr1 214466042 214466390 -67727274 + MLT1H LTR MaLR 15 354 -195 1605 103 0 0 chr1 214466668 214466871 -67726793 + AluSx SINE Alu 1 203 -109 634 339 97 21 chr1 214466982 214467540 -67726124 - L2 LINE L2 -687 2627 2028 2081 144 3 3 chr1 214467733 214468038 -67725626 + AluSx SINE Alu 1 305 -7 652 263 95 35 chr1 214469227 214469565 -67724099 - MLT1K LTR MaLR -26 562 205 202 259 0 17 chr1 214469782 214469840 -67723824 + MIR SINE MIR 201 257 -5 268 254 16 0 chr1 214470977 214471040 -67722624 + L2 LINE L2 3174 3237 -35 714 126 0 0 chr1 214471324 214471435 -67722229 + FLAM_A SINE Alu 18 128 -14 447 224 208 0 chr1 214472182 214472307 -67721357 + MER5A DNA MER1_type 36 186 -3 321 269 0 13 chr1 214472345 214472423 -67721241 - MER5B DNA MER1_type -52 126 50 211 255 0 0 chr1 214472520 214472571 -67721093 - MER5A DNA MER1_type -83 106 56 1955 187 31 29 chr1 214472789 214473243 -67720421 + MLT1C LTR MaLR 1 455 -12 259 259 175 42 chr1 214473617 214473760 -67719904 + MIR SINE MIR 33 194 -68 2161 112 0 3 chr1 214473812 214474107 -67719557 + AluSx SINE Alu 1 294 -18 831 72 0 0 chr1 214474107 214474218 -67719446 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 2386 48 48 0 chr1 214474330 214474623 -67719041 - AluY SINE Alu -4 307 1 273 29 0 0 chr1 214475067 214475101 -67718563 + (TG)n Simple_repeat Simple_repeat 2 35 0 182 100 0 0 chr1 214475375 214475405 -67718259 + L2 LINE L2 3279 3308 -5 325 226 131 65 chr1 214475761 214475929 -67717735 + LTR67 LTR ERVL 369 547 -10 194 0 39 0 chr1 214476546 214476572 -67717092 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2119 116 0 0 chr1 214477471 214477790 -67715874 - AluSx SINE Alu 0 319 1 800 158 0 0 chr1 214478038 214478158 -67715506 + FLAM_C SINE Alu 5 124 -19 186 43 0 0 chr1 214478174 214478197 -67715467 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1001 229 241 40 chr1 214478710 214478900 -67714764 + MLT1E LTR MaLR 1 152 -441 351 0 0 0 chr1 214478900 214478939 -67714725 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 369 0 0 0 chr1 214478938 214478979 -67714685 + (CA)n Simple_repeat Simple_repeat 1 41 0 1001 229 241 40 chr1 214478939 214479282 -67714382 + MLT1E LTR MaLR 152 593 0 185 327 135 0 chr1 214479282 214479386 -67714278 + MIR SINE MIR 139 256 -6 2143 109 10 0 chr1 214479670 214479964 -67713700 + AluSg SINE Alu 1 297 -13 786 282 123 76 chr1 214480221 214481186 -67712478 - L2 LINE L2 -1 3271 2253 248 278 46 5 chr1 214481178 214481287 -67712377 + MIR SINE MIR 57 144 -64 * 561 195 26 0 chr1 214481470 214481624 -67712040 + GA-rich Low_complexity Low_complexity 1 158 0 297 253 0 0 chr1 214481618 214481705 -67711959 + G-rich Low_complexity Low_complexity 2 88 0 * 514 163 14 12 chr1 214481813 214482083 -67711581 + AluJ SINE Alu 2 320 0 588 169 114 139 chr1 214482083 214482232 -67711432 - LTR37A LTR ERV1 -19 407 256 2176 214 95 14 chr1 214482232 214482788 -67710876 + MER77 LTR ERV1 1 601 -4 588 169 114 139 chr1 214482788 214483006 -67710658 - LTR37A LTR ERV1 -170 256 49 201 182 0 0 chr1 214483331 214483364 -67710300 + (TA)n Simple_repeat Simple_repeat 2 34 0 312 296 23 0 chr1 214483365 214483453 -67710211 - L1MC4 LINE L1 -1339 6703 6614 351 300 0 0 chr1 214483467 214483557 -67710107 - L1MC4 LINE L1 -1339 6703 6614 603 258 78 12 chr1 214484051 214484218 -67709446 + MER5B DNA MER1_type 1 178 0 536 186 11 38 chr1 214484756 214484939 -67708725 + GA-rich Low_complexity Low_complexity 3 180 0 1984 147 0 26 chr1 214485020 214485314 -67708350 + AluSx SINE Alu 1 288 -24 786 91 0 0 chr1 214485314 214485435 -67708229 + (GGGAA)n Simple_repeat Simple_repeat 2 122 0 1984 147 0 26 chr1 214485435 214485452 -67708212 + AluSx SINE Alu 288 304 -8 484 79 53 13 chr1 214486155 214486231 -67707433 - MADE1 DNA Mariner 0 80 2 514 184 10 10 chr1 214487549 214487652 -67706012 + FLAM_C SINE Alu 39 141 -2 524 294 182 9 chr1 214487672 214487886 -67705778 + MIR SINE MIR 12 262 0 360 260 77 32 chr1 214487991 214488175 -67705489 - MIR SINE MIR -62 146 5 3033 138 32 67 chr1 214488740 214489356 -67704308 + LTR49 LTR ERV1 1 595 0 202 268 0 18 chr1 214489401 214489457 -67704207 + L2 LINE L2 3165 3219 -94 320 118 17 17 chr1 214489742 214489808 -67703856 + MER4E LTR ERV1 3 59 -551 1956 207 37 24 chr1 214489808 214490397 -67703267 + pTR5 LTR ERV1 748 1344 -1094 4513 133 49 39 chr1 214490413 214491352 -67702312 + pTR5 LTR ERV1 270 2605 -1 2543 141 41 7 chr1 214491352 214491871 -67701793 + MER4E LTR ERV1 63 766 0 23 0 0 0 chr1 214491918 214491941 -67701723 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 214493590 214493616 -67700048 + AT_rich Low_complexity Low_complexity 1 26 0 1633 216 120 34 chr1 214493635 214494227 -67699437 + LTR48B LTR ERV1 2 644 0 1622 211 54 85 chr1 214494287 214494838 -67698826 + LTR8A LTR ERV1 194 727 0 43471 43 5 4 chr1 214495210 214499948 -67693716 - L1PA6 LINE L1 0 6154 1415 2484 18 0 0 chr1 214499948 214500221 -67693443 - AluYa5 SINE Alu 0 311 39 43471 43 5 4 chr1 214500221 214501637 -67692027 - L1PA6 LINE L1 -4739 1415 2 2976 173 30 83 chr1 214501915 214502677 -67690987 + MER72 LTR ERV1 1 722 0 217 209 0 0 chr1 214503150 214503193 -67690471 + (TGGA)n Simple_repeat Simple_repeat 4 46 0 330 206 0 0 chr1 214503316 214503389 -67690275 + (TA)n Simple_repeat Simple_repeat 2 74 0 1449 196 44 0 chr1 214503564 214503814 -67689850 + AluJo SINE Alu 21 281 -31 30 69 0 0 chr1 214503814 214503872 -67689792 + AT_rich Low_complexity Low_complexity 1 58 0 2390 117 37 3 chr1 214504220 214504572 -67689092 - THE1B LTR MaLR 0 364 1 1339 169 0 0 chr1 214504804 214505011 -67688653 + AluJb SINE Alu 85 291 -21 712 96 19 0 chr1 214505107 214505211 -67688453 + HY1 scRNA scRNA 6 111 -1 739 272 126 40 chr1 214505475 214505879 -67687785 + MLT1J1 LTR MaLR 6 444 -2 3778 172 7 10 chr1 214505925 214506598 -67687066 - LTR51 LTR ERV1 0 671 1 27 0 0 0 chr1 214506684 214506711 -67686953 + AT_rich Low_complexity Low_complexity 1 27 0 1656 141 8 80 chr1 214506714 214507085 -67686579 - MER4A LTR ERV1 0 664 261 593 111 10 20 chr1 214507085 214507184 -67686480 - MER4A LTR ERV1 -566 98 1 885 215 6 0 chr1 214507696 214507859 -67685805 + FAM SINE Alu 2 165 -10 207 208 14 14 chr1 214508706 214508757 -67684907 + A-rich Low_complexity Low_complexity 2 55 -18 693 101 10 0 chr1 214508757 214508856 -67684808 + HY3 scRNA scRNA 1 100 -1 207 208 14 14 chr1 214508856 214508876 -67684788 + A-rich Low_complexity Low_complexity 54 73 0 704 149 0 0 chr1 214508876 214508990 -67684674 - MER2 DNA MER2_type -135 210 97 760 165 12 37 chr1 214508991 214509220 -67684444 + MER7A DNA MER2_type 2 329 -7 432 260 10 0 chr1 214509224 214509320 -67684344 - MER2 DNA MER2_type -247 98 2 426 283 10 0 chr1 214509584 214509683 -67683981 + MIR SINE MIR 43 142 -120 238 316 103 35 chr1 214509738 214509912 -67683752 + L2 LINE L2 2226 2411 -903 285 322 106 45 chr1 214511592 214511920 -67681744 - L1ME1 LINE L1 -279 5887 5580 1506 177 13 44 chr1 214511920 214512236 -67681428 - AluJo SINE Alu -1 311 6 285 322 106 45 chr1 214512236 214512341 -67681323 - L1ME1 LINE L1 -586 5580 5483 1690 210 34 72 chr1 214512341 214512893 -67680771 - LTR26B LTR ERV1 0 531 1 285 322 106 45 chr1 214512893 214512913 -67680751 - L1ME1 LINE L1 -683 5483 5466 360 0 0 0 chr1 214512913 214512953 -67680711 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 1783 172 7 0 chr1 214512953 214513243 -67680421 - AluJb SINE Alu -20 292 1 285 322 106 45 chr1 214513243 214513379 -67680285 - L1ME1 LINE L1 -699 5467 5259 1443 115 41 0 chr1 214513381 214513599 -67680065 + MER30 DNA MER1_type 4 230 0 550 218 173 45 chr1 214513637 214513839 -67679825 + LTR48 LTR ERV1 1 228 -559 234 105 0 0 chr1 214513852 214513890 -67679774 + (TC)n Simple_repeat Simple_repeat 2 39 0 342 45 0 0 chr1 214513890 214513934 -67679730 + (CA)n Simple_repeat Simple_repeat 1 44 0 1426 192 63 37 chr1 214513982 214514362 -67679302 + LTR48B LTR ERV1 253 642 -2 580 288 65 24 chr1 214514379 214514792 -67678872 - L1ME1 LINE L1 -930 5216 4787 318 319 47 16 chr1 214514843 214515034 -67678630 - L1ME1 LINE L1 -1438 4708 4512 1655 175 13 82 chr1 214515043 214515432 -67678232 + LTR9 LTR ERV1 1 362 -250 849 225 126 30 chr1 214515509 214515780 -67677884 + LTR9 LTR ERV1 316 612 0 407 319 61 42 chr1 214515791 214516076 -67677588 - L1ME1 LINE L1 -1651 4495 4200 2199 130 0 0 chr1 214516076 214516375 -67677289 - AluSx SINE Alu -13 299 1 407 319 61 42 chr1 214516375 214516449 -67677215 - L1ME1 LINE L1 -1946 4200 4129 262 325 0 0 chr1 214516547 214516667 -67676997 - L1ME1 LINE L1 -3576 2570 2451 279 215 0 0 chr1 214516823 214516888 -67676776 - L1M4 LINE L1 -2658 3488 3424 2406 147 41 30 chr1 214516905 214516999 -67676665 - L1MC1 LINE L1 0 6613 6522 2177 186 34 5 chr1 214516999 214517413 -67676251 + MSTB LTR MaLR 1 426 0 2406 147 41 30 chr1 214517413 214517759 -67675905 - L1MC1 LINE L1 -91 6522 6168 3520 199 11 6 chr1 214517759 214518888 -67674776 - L1MC1 LINE L1 -652 5961 4829 250 256 47 0 chr1 214518923 214519009 -67674655 + L1MC4 LINE L1 6614 6703 -1339 252 143 0 0 chr1 214519009 214519051 -67674613 + (TATATG)n Simple_repeat Simple_repeat 2 43 0 487 190 2 0 chr1 214519056 214519161 -67674503 + L1M4 LINE L1 4777 4883 -1263 230 234 0 75 chr1 214519156 214519250 -67674414 - L1MC4 LINE L1 -1347 6695 6609 * 233 118 0 0 chr1 214519270 214519304 -67674360 + MSTB1 LTR MaLR 399 432 0 1024 144 70 27 chr1 214519305 214519492 -67674172 - L1MC1 LINE L1 -96 6237 6043 300 70 0 0 chr1 214519566 214519609 -67674055 + (TG)n Simple_repeat Simple_repeat 2 44 0 981 195 15 24 chr1 214519615 214519820 -67673844 - AluJo SINE Alu -107 205 3 8654 197 72 24 chr1 214519823 214521174 -67672490 - L1MC1 LINE L1 -1584 4842 3557 2095 126 30 0 chr1 214521174 214521476 -67672188 - AluSq SINE Alu -2 311 1 8654 197 72 24 chr1 214521476 214522981 -67670683 - L1MC1 LINE L1 -2869 3557 2125 1918 176 0 3 chr1 214522981 214523283 -67670381 - AluJb SINE Alu -11 301 1 1991 86 22 22 chr1 214523288 214523557 -67670107 - AluSx SINE Alu -12 300 32 8654 197 72 24 chr1 214523557 214524587 -67669077 - L1MC1 LINE L1 -4304 2122 762 2852 128 12 10 chr1 214524587 214525072 -67668592 + L1MA3 LINE L1 2448 2933 -4632 * 9795 155 15 24 chr1 214525065 214527081 -67666583 + L1MA3 LINE L1 4938 6942 -743 2130 106 24 37 chr1 214527081 214527453 -67666211 + L1MA3 LINE L1 7348 7718 -6 366 234 20 0 chr1 214527485 214527598 -67666066 + L1M4 LINE L1 4735 4855 -1291 189 337 47 0 chr1 214527981 214528067 -67665597 - L2 LINE L2 -274 2998 2909 6876 93 8 10 chr1 214528379 214529385 -67664279 - L1MA2 LINE L1 0 6304 5301 462 235 50 8 chr1 214529386 214529505 -67664159 + MIR SINE MIR 84 207 -55 5738 90 15 2 chr1 214530290 214531091 -67662573 - L1PA14 LINE L1 -1 6160 5350 225 250 159 23 chr1 214531435 214531523 -67662141 + L2 LINE L2 3173 3272 0 185 318 127 0 chr1 214532003 214532113 -67661551 + MIR3 SINE MIR 77 200 -8 1090 170 35 52 chr1 214532197 214532427 -67661237 - AluJo SINE Alu -1 311 86 1956 138 0 3 chr1 214532899 214533182 -67660482 - AluSx SINE Alu -19 293 12 394 200 0 22 chr1 214533187 214533277 -67660387 - L1MC3 LINE L1 -11 7774 7687 1197 200 71 29 chr1 214533278 214533558 -67660106 - MLT1A1 LTR MaLR -58 307 16 1016 198 43 35 chr1 214533565 214533823 -67659841 - L1MC3 LINE L1 -346 7439 7180 303 289 0 0 chr1 214533829 214533905 -67659759 - MLT1F1 LTR MaLR -457 110 35 337 138 274 8 chr1 214533937 214534062 -67659602 - L1MC3 LINE L1 -706 7079 6889 1663 167 27 7 chr1 214534202 214534495 -67659169 - AluJo SINE Alu -8 304 6 298 333 19 0 chr1 214534975 214535080 -67658584 - MLT1J2 LTR MaLR 0 450 344 1853 86 94 0 chr1 214535103 214535359 -67658305 + AluSq SINE Alu 1 280 -33 400 240 33 63 chr1 214535364 214535565 -67658099 - MLT1J1 LTR MaLR -223 227 32 370 327 96 60 chr1 214535644 214535928 -67657736 + L2 LINE L2 2035 2307 -1007 1876 152 13 3 chr1 214535928 214536230 -67657434 - AluJb SINE Alu -7 305 1 370 327 96 60 chr1 214536230 214536646 -67657018 + L2 LINE L2 2307 2760 -554 2643 187 43 15 chr1 214537261 214537297 -67656367 - MLT2B3 LTR ERVL -3 551 517 591 51 0 0 chr1 214537297 214537376 -67656288 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 2643 187 43 15 chr1 214537376 214537875 -67655789 - MLT2B3 LTR ERVL -37 517 1 331 269 21 11 chr1 214538197 214538290 -67655374 - MLT1J LTR MaLR -44 467 374 706 267 64 10 chr1 214538405 214538607 -67655057 - MLT1J LTR MaLR -298 213 1 24 0 0 0 chr1 214538840 214538864 -67654800 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr1 214540384 214540406 -67653258 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 208 139 0 0 chr1 214541212 214541248 -67652416 + (T)n Simple_repeat Simple_repeat 1 36 0 250 250 0 0 chr1 214542605 214542673 -67650991 + (TA)n Simple_repeat Simple_repeat 2 69 0 385 200 313 36 chr1 214542930 214543125 -67650539 + LTR50 LTR ERVL 41 289 -506 472 273 61 12 chr1 214543396 214543561 -67650103 + LTR33A LTR ERVL 351 523 0 387 339 18 46 chr1 214543722 214543940 -67649724 + L2 LINE L2 2851 3062 -210 856 254 44 0 chr1 214544212 214544417 -67649247 - MIR SINE MIR -15 247 34 219 273 84 63 chr1 214544550 214544693 -67648971 - L2 LINE L2 -183 3089 2944 456 19 0 0 chr1 214544770 214544823 -67648841 + (TG)n Simple_repeat Simple_repeat 2 54 0 27 49 0 0 chr1 214545548 214545589 -67648075 + AT_rich Low_complexity Low_complexity 1 41 0 341 294 68 20 chr1 214545631 214545777 -67647887 - L1ME4a LINE L1 -139 5982 5830 1290 290 111 34 chr1 214546169 214546790 -67646874 + L2 LINE L2 1745 2413 -901 35233 90 17 7 chr1 214546794 214552875 -67640789 - L1PA6 LINE L1 -5 6149 11 2157 187 70 14 chr1 214553047 214553529 -67640135 + LTR22 LTR ERVK 1 509 0 4942 121 8 3 chr1 214553529 214554279 -67639385 + HERVK22 LTR ERVK 1 754 -6083 20010 101 17 2 chr1 214554589 214557508 -67636156 + HERVK22 LTR ERVK 2327 5289 -1548 1567 106 0 47 chr1 214557506 214557761 -67635903 + HERVK22 LTR ERVK 6595 6837 0 * 2032 154 79 26 chr1 214557761 214558215 -67635449 + LTR22 LTR ERVK 1 478 -31 14327 144 14 1 chr1 214558221 214560301 -67633363 + L1PA11 LINE L1 2897 5015 -1159 5910 132 79 27 chr1 214560301 214561504 -67632160 - MER11A LTR ERVK 0 1266 1 14327 144 14 1 chr1 214561504 214562680 -67630984 + L1PA11 LINE L1 5015 6174 0 1153 132 21 0 chr1 214562680 214562869 -67630795 + L1PB4 LINE L1 5771 5963 -193 946 239 51 28 chr1 214562865 214563296 -67630368 + L1ME LINE L1 649 1089 -4981 * 2500 34 0 0 chr1 214563378 214563672 -67629992 + L1PA3 LINE L1 5862 6155 0 2142 118 7 0 chr1 214564085 214564382 -67629282 + AluSq SINE Alu 1 299 -14 530 335 42 19 chr1 214564396 214564608 -67629056 + L2 LINE L2 2574 2790 -524 274 305 134 41 chr1 214564661 214564907 -67628757 + L2 LINE L2 3029 3297 -16 182 347 0 27 chr1 214564900 214564975 -67628689 - MIR SINE MIR -150 112 40 * 301 302 35 0 chr1 214565684 214565770 -67627894 + MIR SINE MIR 91 179 -83 291 357 16 24 chr1 214566694 214566820 -67626844 - MER5B DNA MER1_type -1 177 53 350 280 184 0 chr1 214569429 214569554 -67624110 + L2 LINE L2 3121 3268 -4 211 308 140 19 chr1 214569605 214569712 -67623952 - L2 LINE L2 -14 3299 3180 379 302 117 12 chr1 214569926 214570155 -67623509 - L3 LINE CR1 -125 1452 1137 1996 140 16 25 chr1 214571105 214571420 -67622244 - AluSx SINE Alu 0 312 1 188 132 0 26 chr1 214573237 214573275 -67620389 + (GGAA)n Simple_repeat Simple_repeat 2 38 0 404 192 0 13 chr1 214575254 214575332 -67618332 - MER81 DNA DNA -37 77 1 264 223 66 6 chr1 214575400 214575566 -67618098 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 294 229 66 0 chr1 214575459 214575625 -67618039 + (TA)n Simple_repeat Simple_repeat 2 178 0 2919 131 22 20 chr1 214576904 214577407 -67616257 - L1MC1 LINE L1 -14 6319 5816 301 316 10 0 chr1 214577515 214577613 -67616051 + MIR3 SINE MIR 15 113 -95 323 264 195 4 chr1 214578112 214578471 -67615193 - LTR33 LTR ERVL -11 510 41 187 171 29 0 chr1 214580039 214580074 -67613590 - MIR3 SINE MIR -7 201 166 22 56 0 0 chr1 214580154 214580190 -67613474 + AT_rich Low_complexity Low_complexity 1 36 0 832 282 108 31 chr1 214580546 214580961 -67612703 + MLT1J2 LTR MaLR 1 447 -3 2248 112 0 3 chr1 214581070 214581374 -67612290 - AluSx SINE Alu -8 304 2 2323 101 0 0 chr1 214581519 214581817 -67611847 - AluSx SINE Alu -14 298 1 254 373 0 18 chr1 214582062 214582172 -67611492 + MIR3 SINE MIR 9 116 -92 417 188 7 4 chr1 214582520 214582654 -67611010 - MER53 DNA DNA 0 189 3 491 328 27 27 chr1 214582720 214582976 -67610688 - MLT1J LTR MaLR -255 256 1 272 152 22 0 chr1 214582979 214583025 -67610639 - MSTD LTR MaLR 0 396 350 552 214 0 9 chr1 214583026 214583138 -67610526 - MLT1A1 LTR MaLR -254 111 1 204 361 68 21 chr1 214583385 214583576 -67610088 - L2 LINE L2 -212 3060 2861 198 279 0 0 chr1 214583730 214583773 -67609891 - L2 LINE L2 -9 3263 3221 243 261 52 127 chr1 214584166 214584251 -67609413 + MIR SINE MIR 21 94 -168 2067 129 3 3 chr1 214584251 214584546 -67609118 - AluSx SINE Alu -17 295 1 243 261 52 127 chr1 214584546 214584594 -67609070 + MIR SINE MIR 94 144 -118 882 252 103 51 chr1 214584943 214585011 -67608653 + MLT1D LTR MaLR 55 118 -387 1434 176 148 0 chr1 214585011 214585267 -67608397 + AluJb SINE Alu 2 295 -17 882 252 103 51 chr1 214585267 214585627 -67608037 + MLT1D LTR MaLR 118 505 0 511 270 15 15 chr1 214585669 214585806 -67607858 - MIR SINE MIR -102 160 24 752 189 0 8 chr1 214585923 214586055 -67607609 - FLAM_C SINE Alu -2 131 1 199 292 11 56 chr1 214586058 214586147 -67607517 + MIR SINE MIR 178 262 0 2239 101 16 10 chr1 214586422 214586729 -67606935 + AluSc SINE Alu 1 309 0 293 185 228 0 chr1 214587142 214587234 -67606430 - L2 LINE L2 0 3313 3201 1554 184 82 0 chr1 214587370 214587701 -67605963 - MLT1A1 LTR MaLR -7 358 1 360 87 14 29 chr1 214588365 214588434 -67605230 + L1MA10 LINE L1 6264 6331 -3 321 68 0 0 chr1 214588943 214588987 -67604677 + (T)n Simple_repeat Simple_repeat 1 44 0 383 271 8 75 chr1 214589919 214590052 -67603612 - L2 LINE L2 -5 3308 3185 1973 137 18 0 chr1 214590145 214590423 -67603241 + AluJb SINE Alu 1 283 -29 375 23 0 0 chr1 214590423 214590467 -67603197 + (CA)n Simple_repeat Simple_repeat 2 45 0 8009 135 22 50 chr1 214590506 214591990 -67601674 + Ricksha DNA DNA 232 1673 -1573 1720 172 86 11 chr1 214591990 214592350 -67601314 + MLT1F LTR MaLR 156 542 0 1791 264 73 14 chr1 214592797 214593357 -67600307 + MLT1E LTR MaLR 1 593 0 293 235 0 12 chr1 214593907 214593992 -67599672 + MER103 DNA DNA 2 85 -81 2108 118 14 0 chr1 214595289 214595585 -67598079 + AluSq SINE Alu 1 300 -13 219 330 85 0 chr1 214595710 214595804 -67597860 + MIR SINE MIR 14 115 -147 290 326 122 14 chr1 214596222 214596369 -67597295 + L2 LINE L2 3103 3265 -7 208 282 0 47 chr1 214596374 214596459 -67597205 + GA-rich Low_complexity Low_complexity 4 84 0 309 326 0 12 chr1 214597104 214597190 -67596474 - MIR3 SINE MIR -21 187 103 1222 62 6 0 chr1 214597440 214597601 -67596063 - L1PA5 LINE L1 -1 6153 5992 430 310 43 16 chr1 214597669 214597853 -67595811 + MIR SINE MIR 4 192 -70 512 315 65 15 chr1 214598540 214598740 -67594924 - MIR SINE MIR 0 262 53 3989 83 9 5 chr1 214598757 214599309 -67594355 + MER41A LTR ERV1 1 554 0 2098 129 135 5 chr1 214599386 214599765 -67593899 - MSTA LTR MaLR 0 428 1 349 228 8 32 chr1 214600162 214600271 -67593393 + (TA)n Simple_repeat Simple_repeat 2 109 -12 8827 46 3 2 chr1 214600271 214601341 -67592323 - MER11C LTR ERVK 0 1071 1 349 228 8 32 chr1 214601341 214601354 -67592310 + (TA)n Simple_repeat Simple_repeat 109 121 0 253 246 0 18 chr1 214602560 214602617 -67591047 + GA-rich Low_complexity Low_complexity 2 57 0 510 248 53 34 chr1 214602989 214603195 -67590469 - L1ME LINE L1 -368 5753 5544 22 0 0 0 chr1 214603346 214603368 -67590296 + AT_rich Low_complexity Low_complexity 1 22 0 939 231 26 49 chr1 214604618 214604965 -67588699 - LTR37A LTR ERV1 -12 414 76 654 209 10 23 chr1 214604980 214605195 -67588469 - MER106B DNA MER1_type 0 236 24 637 249 21 60 chr1 214605368 214605601 -67588063 + MER58A DNA MER1_type 1 224 0 213 271 21 31 chr1 214607067 214607163 -67586501 + GA-rich Low_complexity Low_complexity 1 95 0 258 284 161 77 chr1 214607908 214608313 -67585351 - L2 LINE L2 -1217 2097 1659 188 212 0 0 chr1 214608362 214608395 -67585269 + MIR SINE MIR 159 191 -71 184 300 100 0 chr1 214609173 214609253 -67584411 + MIR SINE MIR 66 153 -109 3751 126 83 21 chr1 214609256 214609963 -67583701 - Tigger3(Golem) DNA MER2_type -2 3027 2277 640 193 0 9 chr1 214609954 214610063 -67583601 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2189 181 39 32 chr1 214611433 214611897 -67581767 - MLT1C LTR MaLR 0 467 1 249 351 0 0 chr1 214611968 214612045 -67581619 - MIR3 SINE MIR -9 199 123 702 265 135 0 chr1 214612727 214612957 -67580707 + MIR SINE MIR 2 262 0 498 321 18 6 chr1 214613301 214613466 -67580198 + MIR3 SINE MIR 31 197 -11 2418 113 11 30 chr1 214613991 214614362 -67579302 + THE1B LTR MaLR 1 364 0 10642 103 37 3 chr1 214614362 214615890 -67577774 + THE1B-int LTR MaLR 1 1580 0 2632 113 0 0 chr1 214615890 214616254 -67577410 + THE1B LTR MaLR 1 364 0 3917 253 30 40 chr1 214616315 214617857 -67575807 + L1ME2 LINE L1 2328 3854 -2292 1772 168 7 13 chr1 214617862 214618172 -67575492 + AluJb SINE Alu 1 308 -4 2271 175 130 2 chr1 214618183 214618622 -67575042 - LTR44 LTR ERV1 0 519 25 6391 195 58 32 chr1 214619089 214621032 -67572632 - LTR44-int LTR ERV1 -243 5838 3895 2683 181 25 72 chr1 214621032 214621454 -67572210 - LOR1-int LTR ERV1 -2509 4167 3727 3681 69 18 0 chr1 214621454 214621945 -67571719 - L1PA5 LINE L1 0 6154 5655 2683 181 25 72 chr1 214621945 214623005 -67570659 - LOR1-int LTR ERV1 -2949 3727 1188 230 114 0 23 chr1 214624034 214624078 -67569586 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 186 71 0 0 chr1 214624160 214624188 -67569476 + (A)n Simple_repeat Simple_repeat 1 28 0 2344 159 91 46 chr1 214624452 214624949 -67568715 - LTR44 LTR ERV1 0 519 1 392 176 123 156 chr1 214624978 214625094 -67568570 + L1ME2 LINE L1 3915 4033 -2113 2353 84 3 0 chr1 214625094 214625391 -67568273 + AluY SINE Alu 1 298 -13 392 176 123 156 chr1 214625391 214625672 -67567992 + L1ME2 LINE L1 4033 4299 -1847 * 3462 242 18 2 chr1 214625644 214626549 -67567115 + L1P LINE L1 2739 3657 -2489 1631 147 23 33 chr1 214626549 214626849 -67566815 - THE1C LTR MaLR 0 375 79 1286 82 6 6 chr1 214626871 214627054 -67566610 - THE1C-int LTR MaLR 0 1580 1398 1192 231 43 32 chr1 214627064 214627643 -67566021 + L1ME2 LINE L1 5015 5613 -551 228 155 35 17 chr1 214627663 214627721 -67565943 - L1MCa LINE L1 -4362 2064 2006 301 333 0 0 chr1 214627738 214627828 -67565836 - L1MC4 LINE L1 -1339 6703 6614 243 0 0 0 chr1 214627828 214627855 -67565809 + (CA)n Simple_repeat Simple_repeat 2 28 0 1980 223 63 20 chr1 214627858 214628364 -67565300 + L1ME2 LINE L1 5603 6130 -34 2434 90 0 0 chr1 214628438 214628738 -67564926 - AluSq SINE Alu -13 300 1 307 207 0 0 chr1 214630103 214630161 -67563503 + L2 LINE L2 3256 3313 0 13999 176 13 9 chr1 214630613 214634102 -67559562 + L1PB1 LINE L1 2293 5765 -386 420 20 0 0 chr1 214634102 214634151 -67559513 + (TA)n Simple_repeat Simple_repeat 1 49 0 216 0 0 0 chr1 214634150 214634174 -67559490 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 13999 176 13 9 chr1 214634151 214634533 -67559131 + L1PB1 LINE L1 5765 6149 -2 298 284 0 0 chr1 214634714 214634802 -67558862 - MIR SINE MIR -27 235 148 1570 138 87 21 chr1 214634811 214635188 -67558476 - L1PA16 LINE L1 0 6166 5730 351 231 44 9 chr1 214635189 214635295 -67558369 - MIR SINE MIR -63 145 4 1853 145 12 58 chr1 214635329 214635654 -67558010 - AluJb SINE Alu -2 310 1 725 216 0 0 chr1 214635717 214635842 -67557822 + Tigger3(Golem) DNA MER2_type 1 125 -2904 1494 156 4 27 chr1 214635855 214636118 -67557546 + Tigger3(Golem) DNA MER2_type 2771 3027 -2 285 317 110 88 chr1 214636399 214636718 -67556946 + LTR67 LTR ERVL 2 327 -230 230 136 0 68 chr1 214636888 214636947 -67556717 - MLT1D LTR MaLR 0 505 451 836 173 23 0 chr1 214636953 214637086 -67556578 + AluJo SINE Alu 1 136 -176 801 219 211 4 chr1 214637099 214637335 -67556329 - MLT1D LTR MaLR -53 452 168 262 185 0 19 chr1 214637335 214637389 -67556275 + Alu SINE Alu 1 53 -247 404 282 107 75 chr1 214637457 214637789 -67555875 + ERVL LTR ERVL 1686 2040 -3015 983 259 24 8 chr1 214637957 214638208 -67555456 + ERVL LTR ERVL 2335 2589 -3175 1671 330 81 34 chr1 214638385 214639549 -67554115 + ERVL LTR ERVL 2782 4044 -1720 1138 295 72 13 chr1 214639555 214640030 -67553634 - L1MEc LINE L1 -5853 543 41 307 290 69 54 chr1 214640250 214640584 -67553080 - L1ME LINE L1 -423 5698 5360 713 226 142 32 chr1 214641145 214641525 -67552139 + L1ME4a LINE L1 5699 6120 -1 21 57 0 0 chr1 214641671 214641706 -67551958 + AT_rich Low_complexity Low_complexity 1 35 0 462 208 28 19 chr1 214641830 214641936 -67551728 + MIR SINE MIR 34 140 -122 261 83 0 0 chr1 214642208 214642244 -67551420 + (A)n Simple_repeat Simple_repeat 1 36 0 345 259 46 9 chr1 214642564 214642672 -67550992 - MER94 DNA DNA -13 121 10 225 258 113 93 chr1 214644131 214644282 -67549382 + L2 LINE L2 3121 3274 -39 210 321 55 55 chr1 214644281 214644390 -67549274 + MIR3 SINE MIR 91 199 -9 * 2083 114 3 17 chr1 214644427 214644726 -67548938 + AluSx SINE Alu 9 303 -9 891 171 7 0 chr1 214644948 214645094 -67548570 + FAM SINE Alu 26 172 -13 549 341 175 22 chr1 214645514 214645966 -67547698 + L3 LINE CR1 249 769 -808 2296 230 114 9 chr1 214646012 214646689 -67546975 + L1ME3 LINE L1 5406 6153 -9 186 209 0 0 chr1 214646699 214646742 -67546922 + (TA)n Simple_repeat Simple_repeat 2 44 0 826 323 219 17 chr1 214646742 214647380 -67546284 + L3 LINE CR1 808 1574 -3 370 308 59 36 chr1 214647652 214647957 -67545707 - L1ME LINE L1 -424 5697 5386 382 207 108 9 chr1 214648329 214648440 -67545224 + L1ME4a LINE L1 5988 6109 -12 1999 142 0 29 chr1 214649742 214650051 -67543613 + AluSx SINE Alu 1 300 -12 477 306 41 23 chr1 214651260 214651479 -67542185 + L2 LINE L2 2668 2890 -424 289 321 73 7 chr1 214653179 214653316 -67540348 + L2 LINE L2 2915 3060 -212 1294 98 133 15 chr1 214653368 214653571 -67540093 - MER30 DNA MER1_type 0 230 4 1482 185 43 3 chr1 214653626 214653929 -67539735 + MER33 DNA MER1_type 10 324 0 332 305 59 25 chr1 214653932 214654050 -67539614 + L2 LINE L2 3151 3272 0 1518 167 93 0 chr1 214654087 214654356 -67539308 + AluJb SINE Alu 1 294 -18 3627 219 50 25 chr1 214655791 214656256 -67537408 + L1MC4a LINE L1 6833 7285 -523 2160 103 7 3 chr1 214656256 214656546 -67537118 + AluSc SINE Alu 1 291 -18 3627 219 50 25 chr1 214656546 214657032 -67536632 + L1MC4a LINE L1 7285 7808 0 2573 51 0 0 chr1 214657062 214657356 -67536308 + AluY SINE Alu 1 294 -17 317 150 83 0 chr1 214657595 214657655 -67536009 - MER5C DNA MER1_type -257 67 3 * 1635 263 65 29 chr1 214657655 214658173 -67535491 - L2 LINE L2 -513 2801 2265 415 337 55 11 chr1 214658311 214658492 -67535172 - MIR SINE MIR -53 209 21 209 293 17 0 chr1 214658577 214658635 -67535029 + MIR3 SINE MIR 147 205 -3 25 0 0 0 chr1 214658806 214658831 -67534833 + AT_rich Low_complexity Low_complexity 1 25 0 1664 197 13 3 chr1 214659825 214660130 -67533534 - AluJo SINE Alu -4 308 1 2568 176 105 25 chr1 214660134 214660697 -67532967 - MLT1E2 LTR MaLR -2 624 17 812 224 112 5 chr1 214660711 214660925 -67532739 - MIR SINE MIR -24 238 2 1561 92 60 5 chr1 214661485 214661703 -67531961 + MER30 DNA MER1_type 1 230 0 450 293 76 9 chr1 214661725 214661887 -67531777 + MIR SINE MIR 16 189 -66 801 199 7 0 chr1 214662536 214662677 -67530987 + MLT1E2 LTR MaLR 471 612 -14 441 50 0 0 chr1 214663125 214663185 -67530479 + (CA)n Simple_repeat Simple_repeat 2 61 0 365 306 82 7 chr1 214663662 214663809 -67529855 + MIR SINE MIR 86 243 -19 856 268 0 36 chr1 214664009 214664229 -67529435 + MIR SINE MIR 51 262 0 842 211 25 133 chr1 214664404 214664683 -67528981 - MIR SINE MIR 0 262 14 26 74 0 0 chr1 214664947 214665001 -67528663 + AT_rich Low_complexity Low_complexity 1 54 0 1188 155 37 27 chr1 214665044 214665345 -67528319 - THE1C LTR MaLR 0 375 1 260 365 29 14 chr1 214665557 214665765 -67527899 + L2 LINE L2 2615 2825 -489 852 183 0 0 chr1 214666971 214667102 -67526562 + FLAM_C SINE Alu 1 131 -2 627 207 0 0 chr1 214667307 214667418 -67526246 + L2 LINE L2 3199 3309 -4 265 269 15 0 chr1 214667416 214667483 -67526181 - L2 LINE L2 -4 3309 3242 * 352 243 144 18 chr1 214667513 214667624 -67526040 + L2 LINE L2 2263 2387 -927 259 293 24 0 chr1 214668263 214668345 -67525319 + GA-rich Low_complexity Low_complexity 5 88 0 200 296 45 11 chr1 214669909 214669997 -67523667 - L2 LINE L2 -43 3270 3180 4354 173 58 10 chr1 214671657 214672443 -67521221 + LTR1B LTR ERV1 3 826 0 408 271 182 11 chr1 214672670 214672851 -67520813 - L2 LINE L2 -1 3312 3101 306 325 143 0 chr1 214673595 214673749 -67519915 + MIR SINE MIR 6 181 -81 815 262 117 31 chr1 214675121 214675225 -67518439 - L2 LINE L2 -43 3270 3176 2006 176 11 23 chr1 214675225 214675572 -67518092 - MER2 DNA MER2_type 0 344 2 815 262 117 31 chr1 214675572 214675791 -67517873 - L2 LINE L2 -137 3176 2919 1459 148 30 4 chr1 214676393 214676657 -67517007 + L1MA4A LINE L1 6033 6303 0 259 290 9 84 chr1 214677241 214677348 -67516316 + MIR3 SINE MIR 89 187 -21 231 228 0 51 chr1 214677581 214677660 -67516004 - L1MC4 LINE L1 -1339 6703 6629 282 224 0 66 chr1 214677689 214677765 -67515899 - MER2 DNA MER2_type -267 78 8 7505 54 6 8 chr1 214678026 214679667 -67513997 - L1PA8 LINE L1 0 6172 4523 243 237 17 110 chr1 214679687 214679805 -67513859 + MLT1H LTR MaLR 222 328 -221 2326 219 43 21 chr1 214679805 214680339 -67513325 + L1MEc LINE L1 279 824 -5572 622 194 108 0 chr1 214680340 214680469 -67513195 - MLT1C LTR MaLR -3 464 322 2186 112 3 26 chr1 214680955 214681268 -67512396 + AluSx SINE Alu 1 306 -6 1136 234 147 30 chr1 214682075 214682780 -67510884 - L2 LINE L2 0 3313 2553 2285 107 0 0 chr1 214682879 214683178 -67510486 + AluSx SINE Alu 1 299 -13 2111 127 3 3 chr1 214683187 214683486 -67510178 + AluSx SINE Alu 1 299 -13 2331 107 0 0 chr1 214683507 214683815 -67509849 - AluSg1 SINE Alu -1 308 1 2591 64 0 6 chr1 214684497 214684810 -67508854 + AluY SINE Alu 1 311 0 1576 216 49 61 chr1 214685264 214685321 -67508343 - MLT1C LTR MaLR 0 467 411 3575 139 23 10 chr1 214685321 214685840 -67507824 - MER1A DNA MER1_type -1 526 1 1576 216 49 61 chr1 214685840 214686255 -67507409 - MLT1C LTR MaLR -56 411 1 480 244 150 0 chr1 214686746 214686873 -67506791 - MER117 DNA MER1_type -51 146 1 726 194 21 94 chr1 214687022 214687213 -67506451 - MER69A DNA AcHobo 0 177 1 434 313 52 15 chr1 214688273 214688407 -67505257 + MIR SINE MIR 7 145 -117 247 230 46 35 chr1 214689124 214689211 -67504453 + GA-rich Low_complexity Low_complexity 3 90 0 284 401 0 20 chr1 214690059 214690206 -67503458 + MIR3 SINE MIR 3 146 -62 509 292 79 40 chr1 214690254 214690456 -67503208 - MIR SINE MIR -11 251 42 1970 152 3 0 chr1 214692221 214692517 -67501147 + AluSx SINE Alu 1 297 -15 2068 169 116 28 chr1 214692842 214692971 -67500693 + L1MC4a LINE L1 7098 7214 -594 1840 182 13 76 chr1 214692971 214693366 -67500298 + MLT1A2 LTR MaLR 1 370 -4 2068 169 116 28 chr1 214693366 214693779 -67499885 + L1MC4a LINE L1 7214 7688 -120 31 58 0 0 chr1 214693783 214693835 -67499829 + AT_rich Low_complexity Low_complexity 1 52 0 457 295 89 13 chr1 214693851 214694075 -67499589 - L1ME4a LINE L1 -212 5909 5669 2106 123 30 33 chr1 214694133 214694467 -67499197 - MER1B DNA MER1_type -6 333 1 26 50 0 0 chr1 214694550 214694590 -67499074 + AT_rich Low_complexity Low_complexity 1 40 0 1955 127 0 56 chr1 214694893 214695215 -67498449 + AluSx SINE Alu 1 304 -8 1449 226 125 47 chr1 214695765 214696230 -67497434 - MLT1D LTR MaLR 0 505 5 2105 128 3 0 chr1 214696301 214696605 -67497059 + AluSx SINE Alu 6 310 -2 209 182 0 23 chr1 214697535 214697579 -67496085 + MIR SINE MIR 160 202 -60 1529 235 29 11 chr1 214697579 214697957 -67495707 + MLT2C1 LTR ERVL 13 397 0 219 216 0 0 chr1 214698022 214698059 -67495605 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2372 97 0 0 chr1 214698366 214698666 -67494998 - AluSc SINE Alu -9 300 1 205 237 0 0 chr1 214699062 214699100 -67494564 - L2 LINE L2 -5 3267 3230 220 219 203 0 chr1 214699394 214699458 -67494206 - MIR SINE MIR -118 144 68 330 299 277 24 chr1 214699598 214700013 -67493651 + L2 LINE L2 87 606 -2708 2003 277 166 21 chr1 214700013 214701115 -67492549 + L2 LINE L2 944 2205 -1109 290 325 58 43 chr1 214702783 214702971 -67490693 + MIR SINE MIR 24 214 -48 21 0 0 0 chr1 214703829 214703850 -67489814 + AT_rich Low_complexity Low_complexity 1 21 0 531 236 84 30 chr1 214703883 214704146 -67489518 + L1ME4a LINE L1 5556 5832 -289 215 125 25 0 chr1 214704276 214704316 -67489348 + GA-rich Low_complexity Low_complexity 4 44 0 311 252 49 41 chr1 214704322 214704445 -67489219 + L1ME4a LINE L1 5976 6099 -22 1874 158 3 13 chr1 214704543 214704841 -67488823 + AluJb SINE Alu 1 295 -17 184 259 200 12 chr1 214704845 214704930 -67488734 + L3 LINE CR1 189 289 -1288 25 31 0 0 chr1 214704944 214704976 -67488688 + AT_rich Low_complexity Low_complexity 1 32 0 331 167 17 0 chr1 214704982 214705042 -67488622 - U7 snRNA snRNA -1 62 2 348 274 167 27 chr1 214705081 214705267 -67488397 + L3 LINE CR1 348 559 -1018 638 235 76 84 chr1 214705300 214705538 -67488126 - MIR SINE MIR -21 241 6 983 252 93 30 chr1 214705878 214706211 -67487453 + MLT1H LTR MaLR 1 354 -195 1643 158 79 4 chr1 214706238 214706516 -67487148 + AluJb SINE Alu 1 299 -13 248 268 0 0 chr1 214706562 214706633 -67487031 + MLT1H LTR MaLR 479 549 0 337 214 71 0 chr1 214706646 214706716 -67486948 - MIR SINE MIR -122 140 66 198 412 24 0 chr1 214706748 214706833 -67486831 + L3 LINE CR1 1005 1091 -486 1836 185 0 10 chr1 214706922 214707235 -67486429 + AluJo SINE Alu 1 310 -2 229 279 0 38 chr1 214707704 214707783 -67485881 + L3 LINE CR1 1325 1400 -177 647 236 22 34 chr1 214707874 214708052 -67485612 - MLT1J2 LTR MaLR -11 439 264 253 62 42 0 chr1 214708399 214708447 -67485217 + (CAAAAA)n Simple_repeat Simple_repeat 2 51 0 213 296 148 17 chr1 214708513 214708628 -67485036 + L2 LINE L2 3183 3312 -1 32 43 0 0 chr1 214708683 214708729 -67484935 + AT_rich Low_complexity Low_complexity 1 46 0 2203 117 0 0 chr1 214708755 214709053 -67484611 - AluSx SINE Alu -10 302 5 6176 93 24 0 chr1 214709055 214710040 -67483624 - L1PA12 LINE L1 -1 6167 5191 300 414 61 33 chr1 214710132 214710523 -67483141 + L2 LINE L2 2867 3268 -4 227 250 90 10 chr1 214711000 214711100 -67482564 - MIR SINE MIR -51 211 104 1525 175 145 37 chr1 214711143 214711599 -67482065 + MLT1D LTR MaLR 1 505 0 337 309 129 0 chr1 214713239 214713417 -67480247 + MIR SINE MIR 62 262 0 368 139 0 13 chr1 214714884 214714963 -67478701 + L1MB3 LINE L1 6106 6183 0 455 337 78 3 chr1 214715524 214715871 -67477793 - HERVL LTR ERVL -1388 4266 3894 248 218 89 10 chr1 214716058 214716159 -67477505 + L1ME LINE L1 5716 5824 -297 21 57 0 0 chr1 214716679 214716714 -67476950 + AT_rich Low_complexity Low_complexity 1 35 0 226 162 0 0 chr1 214719093 214719130 -67474534 - MLT1B LTR MaLR -2 388 352 676 284 127 7 chr1 214719530 214719753 -67473911 - MIR SINE MIR -12 250 3 212 261 72 0 chr1 214719833 214719902 -67473762 + MIR SINE MIR 77 150 -112 1679 189 34 0 chr1 214720031 214720322 -67473342 + AluJo SINE Alu 1 301 -11 284 327 59 20 chr1 214721768 214721869 -67471795 + L2 LINE L2 3201 3305 -8 754 264 51 31 chr1 214722214 214722468 -67471196 - MIR SINE MIR -2 260 2 2108 115 3 3 chr1 214722597 214722885 -67470779 + AluSx SINE Alu 1 288 -24 758 11 0 11 chr1 214722886 214722978 -67470686 + (CAATA)n Simple_repeat Simple_repeat 2 92 0 1096 235 97 59 chr1 214723261 214723716 -67469948 + MLT1H LTR MaLR 72 543 -6 186 298 97 61 chr1 214723730 214723844 -67469820 + L2 LINE L2 2970 3087 -185 23 54 0 0 chr1 214724186 214724223 -67469441 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 214724662 214724686 -67468978 + AT_rich Low_complexity Low_complexity 1 24 0 445 206 37 15 chr1 214724933 214725069 -67468595 - L1ME4a LINE L1 -22 6099 5961 505 108 0 14 chr1 214725233 214725307 -67468357 - AluSg/x SINE Alu -153 157 85 2134 104 0 11 chr1 214725446 214725725 -67467939 + AluSq SINE Alu 2 277 -36 195 42 0 0 chr1 214725730 214725754 -67467910 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 395 163 244 0 chr1 214725789 214725875 -67467789 + MER7A DNA MER2_type 3 107 -239 423 179 13 0 chr1 214725911 214725989 -67467675 + MER7A DNA MER2_type 243 321 -15 679 228 44 103 chr1 214727756 214728028 -67465636 - MIR SINE MIR 0 262 7 21 57 0 0 chr1 214729932 214729967 -67463697 + AT_rich Low_complexity Low_complexity 1 35 0 336 278 82 10 chr1 214731211 214731308 -67462356 - MER5A DNA MER1_type -36 153 50 379 305 45 23 chr1 214731366 214731482 -67462182 + MIR SINE MIR 40 163 -99 2232 176 31 19 chr1 214731482 214731852 -67461812 + MSTB LTR MaLR 1 378 -48 2691 27 0 0 chr1 214731852 214732153 -67461511 + AluY SINE Alu 1 301 -10 2232 176 31 19 chr1 214732153 214732203 -67461461 + MSTB LTR MaLR 378 426 0 379 305 45 23 chr1 214732203 214732263 -67461401 + MIR SINE MIR 163 220 -42 261 343 29 9 chr1 214732847 214732952 -67460712 + L2 LINE L2 3207 3313 0 278 235 41 31 chr1 214734597 214734695 -67458969 + L2 LINE L2 2014 2112 -1202 279 0 0 0 chr1 214734706 214734737 -67458927 + (TG)n Simple_repeat Simple_repeat 1 31 0 1277 151 72 75 chr1 214734823 214734994 -67458670 - LTR1 LTR ERV1 -423 362 191 2907 13 0 0 chr1 214734994 214735312 -67458352 - AluYb8 SINE Alu 0 318 1 1277 151 72 75 chr1 214735312 214735472 -67458192 - LTR1 LTR ERV1 -594 191 32 2832 242 105 3 chr1 214735504 214736455 -67457209 + L2 LINE L2 2079 3121 -192 562 319 41 24 chr1 214736484 214737071 -67456593 + L1ME LINE L1 4625 5221 -925 438 266 86 61 chr1 214737233 214737627 -67456037 + L1ME LINE L1 5370 5773 -389 27 29 0 0 chr1 214737730 214737764 -67455900 + AT_rich Low_complexity Low_complexity 1 34 0 967 260 79 77 chr1 214737833 214738363 -67455301 + MLT1H LTR MaLR 19 549 0 1910 151 13 3 chr1 214738445 214738750 -67454914 - AluJb SINE Alu -4 308 1 24 32 0 0 chr1 214740064 214740095 -67453569 + AT_rich Low_complexity Low_complexity 1 31 0 825 261 137 0 chr1 214740318 214740529 -67453135 - MIR SINE MIR -21 241 2 1788 181 0 0 chr1 214741134 214741427 -67452237 + AluJo SINE Alu 5 297 -15 769 139 90 0 chr1 214741438 214741560 -67452104 + FRAM SINE Alu 35 167 -9 1194 210 0 0 chr1 214741855 214742069 -67451595 + MER58A DNA MER1_type 3 216 -8 770 148 23 0 chr1 214742070 214742198 -67451466 + FLAM_C SINE Alu 1 131 -2 225 295 26 26 chr1 214743258 214743336 -67450328 - L2 LINE L2 -5 3308 3231 266 316 79 0 chr1 214743402 214743541 -67450123 + MER117 DNA MER1_type 1 150 -47 230 276 0 0 chr1 214743796 214743854 -67449810 - L2 LINE L2 -1395 1919 1862 2179 91 3 70 chr1 214743987 214744318 -67449346 - AluSq SINE Alu -4 309 1 2249 88 3 7 chr1 214744821 214745115 -67448549 + AluSc SINE Alu 1 293 -16 189 305 51 0 chr1 214745520 214745579 -67448085 + MIR3 SINE MIR 147 208 0 216 0 0 0 chr1 214745752 214745776 -67447888 + (T)n Simple_repeat Simple_repeat 1 24 0 1875 143 0 14 chr1 214746282 214746569 -67447095 + AluJb SINE Alu 16 298 -14 444 275 63 0 chr1 214746704 214746846 -67446818 - MIR SINE MIR -13 249 99 197 313 25 25 chr1 214747652 214747732 -67445932 + L2 LINE L2 3191 3270 -2 276 278 19 46 chr1 214747772 214747880 -67445784 + Charlie7 DNA MER1_type 1 105 -2507 * 418 138 84 84 chr1 214747847 214748014 -67445650 + Charlie7 DNA MER1_type 2418 2584 -28 522 292 53 29 chr1 214748107 214748278 -67445386 - MER5A DNA MER1_type -1 188 14 21 57 0 0 chr1 214748424 214748459 -67445205 + AT_rich Low_complexity Low_complexity 1 35 0 248 303 64 18 chr1 214748481 214748590 -67445074 - MIR SINE MIR -58 204 91 1392 137 17 37 chr1 214748602 214748843 -67444821 + MER46A DNA MER2_type 1 236 0 227 289 29 58 chr1 214749167 214749271 -67444393 + MIR3 SINE MIR 103 203 -5 1391 205 55 29 chr1 214749500 214749850 -67443814 + MLT1F1 LTR MaLR 179 517 -50 1017 136 14 0 chr1 214750078 214750225 -67443439 + FAM SINE Alu 21 169 -16 192 77 0 0 chr1 214751818 214751844 -67441820 + (A)n Simple_repeat Simple_repeat 1 26 0 2326 108 0 6 chr1 214751856 214752171 -67441493 + AluSq SINE Alu 1 313 0 1017 236 58 81 chr1 214752213 214752284 -67441380 + Charlie8 DNA MER1_type 1 72 -476 643 191 9 0 chr1 214752284 214752394 -67441270 - MER81 DNA DNA 0 114 4 1017 236 58 81 chr1 214752394 214752824 -67440840 + Charlie8 DNA MER1_type 72 483 -65 189 172 16 125 chr1 214753415 214753479 -67440185 + L2 LINE L2 3216 3272 0 373 326 147 11 chr1 214753601 214753785 -67439879 + MIR SINE MIR 40 248 -14 1597 170 3 55 chr1 214753817 214754146 -67439518 + AluJo SINE Alu 1 312 0 548 186 21 0 chr1 214754448 214754545 -67439119 + FLAM_A SINE Alu 35 133 -9 44938 36 5 3 chr1 214754547 214760746 -67432918 + L1PA4 LINE L1 1 6214 0 2002 104 0 67 chr1 214761251 214761567 -67432097 - AluSx SINE Alu -4 308 14 262 146 18 18 chr1 214761972 214762027 -67431637 - LTR49 LTR ERV1 -72 523 469 192 77 0 0 chr1 214762335 214762361 -67431303 + (T)n Simple_repeat Simple_repeat 1 26 0 479 324 81 37 chr1 214762447 214762882 -67430782 - L2 LINE L2 -18 3295 2842 1140 253 198 42 chr1 214762887 214763079 -67430585 - L2 LINE L2 -1 3312 3151 1166 187 34 5 chr1 214763079 214763288 -67430376 + MER20 DNA MER1_type 5 219 0 1140 253 198 42 chr1 214763288 214764128 -67429536 - L2 LINE L2 -162 3151 2135 843 136 0 0 chr1 214764187 214764305 -67429359 + AluJb SINE Alu 1 118 -194 308 303 10 133 chr1 214764428 214764623 -67429041 - MIR3 SINE MIR -33 175 5 387 267 133 0 chr1 214766259 214766379 -67427285 + L3 LINE CR1 1430 1565 -12 25 0 0 0 chr1 214767496 214767521 -67426143 + AT_rich Low_complexity Low_complexity 1 25 0 1760 71 0 13 chr1 214767658 214767882 -67425782 - AluY SINE Alu -2 309 89 1654 170 16 39 chr1 214768057 214768187 -67425477 + AluJb SINE Alu 6 137 -175 1946 109 0 0 chr1 214768187 214768473 -67425191 + AluSc SINE Alu 34 309 0 1654 170 16 39 chr1 214768473 214768648 -67425016 + AluJb SINE Alu 137 304 -8 22 35 0 0 chr1 214768733 214768762 -67424902 + AT_rich Low_complexity Low_complexity 1 29 0 221 306 24 24 chr1 214770694 214770779 -67422885 + L2 LINE L2 3180 3264 -8 308 251 8 83 chr1 214770887 214771071 -67422593 + MIR SINE MIR 39 204 -58 1658 213 87 65 chr1 214771663 214772155 -67421509 - MLT1D LTR MaLR 0 505 3 967 197 10 52 chr1 214772157 214772196 -67421468 - MER5A DNA MER1_type 0 189 150 2399 52 31 0 chr1 214772196 214772484 -67421180 + AluY SINE Alu 1 297 -14 967 197 10 52 chr1 214772484 214772637 -67421027 - MER5A DNA MER1_type -39 150 5 207 0 0 0 chr1 214774331 214774354 -67419310 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 16651 206 34 28 chr1 214774358 214778661 -67415003 - L1P4 LINE L1 -487 6330 2053 2158 127 0 3 chr1 214778661 214778960 -67414704 - AluSq SINE Alu -15 298 1 16651 206 34 28 chr1 214778960 214778986 -67414678 - L1P4 LINE L1 -4764 2053 2029 4084 92 23 3 chr1 214778986 214779554 -67414110 + L1MA2 LINE L1 5726 6304 0 16651 206 34 28 chr1 214779554 214780155 -67413509 - L1P4 LINE L1 -4788 2029 1323 2336 274 7 14 chr1 214780423 214780996 -67412668 - L1P4 LINE L1 -6175 612 44 1613 141 18 84 chr1 214780998 214781123 -67412541 + L1MA6 LINE L1 5990 6122 -178 2476 59 0 37 chr1 214781123 214781446 -67412218 + AluY SINE Alu 1 311 0 1613 141 18 84 chr1 214781446 214781653 -67412011 + L1MA6 LINE L1 6122 6300 0 650 296 45 56 chr1 214781673 214781784 -67411880 - L1ME4a LINE L1 -185 5936 5825 2095 143 0 3 chr1 214781784 214782092 -67411572 - AluJb SINE Alu -5 307 1 650 296 45 56 chr1 214782092 214782335 -67411329 - L1ME4a LINE L1 -296 5825 5586 1995 148 7 3 chr1 214782494 214782791 -67410873 - AluJb SINE Alu -14 298 1 914 247 59 26 chr1 214783145 214783416 -67410248 + MLT1J LTR MaLR 225 504 -7 4541 138 24 22 chr1 214784071 214784126 -67409538 + Tigger2 DNA MER2_type 1 54 -2664 2039 131 3 23 chr1 214784126 214784431 -67409233 - AluJb SINE Alu -13 299 1 4541 138 24 22 chr1 214784431 214785038 -67408626 + Tigger2 DNA MER2_type 54 668 -2050 2261 95 0 7 chr1 214785038 214785344 -67408320 + AluY SINE Alu 1 304 -7 4541 138 24 22 chr1 214785344 214785422 -67408242 + Tigger2 DNA MER2_type 668 744 -1974 1396 122 84 0 chr1 214785481 214785718 -67407946 + Tigger2 DNA MER2_type 2462 2718 0 22 70 0 0 chr1 214786226 214786269 -67407395 + AT_rich Low_complexity Low_complexity 1 43 0 2107 139 3 0 chr1 214786366 214786661 -67407003 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 214787011 214787032 -67406632 + AT_rich Low_complexity Low_complexity 1 21 0 598 262 195 14 chr1 214787464 214787685 -67405979 - MIR SINE MIR 0 262 2 437 207 89 30 chr1 214789204 214789339 -67404325 + HAL1b LINE L1 765 907 -441 1692 144 63 7 chr1 214789670 214789940 -67403724 + AluSx SINE Alu 12 296 -16 273 276 26 0 chr1 214789949 214790025 -67403639 + GA-rich Low_complexity Low_complexity 1 78 0 1429 188 19 48 chr1 214790568 214790882 -67402782 + AluJo SINE Alu 2 306 -6 206 32 32 0 chr1 214791666 214791697 -67401967 + (TA)n Simple_repeat Simple_repeat 2 33 0 453 286 192 0 chr1 214791727 214791909 -67401755 + MIR SINE MIR 22 238 -24 442 136 0 0 chr1 214792406 214792472 -67401192 + MER58 DNA MER1_type 2355 2420 0 893 254 58 28 chr1 214792842 214793133 -67400531 + MER46C DNA MER2_type 38 337 -1 234 208 139 14 chr1 214793458 214793530 -67400134 - L2 LINE L2 -10 3303 3223 1170 262 79 20 chr1 214793572 214794114 -67399550 - L2 LINE L2 0 3313 2730 216 196 130 0 chr1 214794204 214794250 -67399414 - L2 LINE L2 -257 3056 3005 255 350 12 49 chr1 214794324 214794487 -67399177 - L2 LINE L2 -491 2823 2667 234 263 62 12 chr1 214794571 214794651 -67399013 - MER112 DNA MER1_type -108 152 69 247 282 295 0 chr1 214794788 214794937 -67398727 - L2 LINE L2 -825 2489 2297 348 159 103 71 chr1 214795019 214795145 -67398519 - MER53 DNA DNA -58 131 2 1355 212 10 10 chr1 214795266 214795554 -67398110 - AluJo SINE Alu -24 288 1 21 57 0 0 chr1 214795587 214795622 -67398042 + AT_rich Low_complexity Low_complexity 1 35 0 182 180 0 120 chr1 214796631 214796681 -67396983 - L2 LINE L2 -1 3271 3228 1701 176 86 47 chr1 214796862 214797563 -67396101 + LTR48 LTR ERV1 1 787 0 1612 134 94 16 chr1 214797619 214798062 -67395602 + LTR54 LTR ERV1 1 496 -2 321 137 189 9 chr1 214798080 214798169 -67395495 + L1MB7 LINE L1 6090 6184 0 837 232 37 0 chr1 214798177 214798341 -67395323 + FAM SINE Alu 5 174 -1 1913 162 43 45 chr1 214798821 214799241 -67394423 + MSTB1 LTR MaLR 1 419 -13 1866 204 57 17 chr1 214799338 214799798 -67393866 - MER31A LTR ERV1 0 485 8 930 223 43 49 chr1 214800213 214800518 -67393146 + Charlie2 DNA MER1_type 2 304 -2558 256 206 234 57 chr1 214800653 214800828 -67392836 + Charlie2a DNA MER1_type 1467 1672 -1190 1066 179 26 10 chr1 214800831 214801026 -67392638 + LTR54 LTR ERV1 1 198 -312 904 187 0 0 chr1 214801592 214801758 -67391906 - FRAM SINE Alu 0 40 1 1318 156 25 8 chr1 214801762 214802005 -67391659 + LTR54 LTR ERV1 264 510 0 284 250 36 0 chr1 214802036 214802120 -67391544 + Charlie2 DNA MER1_type 2776 2862 0 205 319 111 52 chr1 214802690 214802825 -67390839 - MIR3 SINE MIR -54 154 12 282 301 21 77 chr1 214803733 214803876 -67389788 - MER117 DNA MER1_type -54 143 9 704 179 81 0 chr1 214803985 214804108 -67389556 - FLAM_A SINE Alu -4 138 6 214 292 88 68 chr1 214805003 214805195 -67388469 - L3b LINE CR1 -120 1463 1268 21 36 0 0 chr1 214805340 214805368 -67388296 + AT_rich Low_complexity Low_complexity 1 28 0 870 155 0 0 chr1 214805454 214805583 -67388081 - FLAM_A SINE Alu 0 133 5 266 276 200 13 chr1 214805587 214805812 -67387852 + L2 LINE L2 2824 3090 -182 224 328 0 0 chr1 214805902 214805960 -67387704 + L2 LINE L2 3255 3312 -1 877 111 7 7 chr1 214807461 214807596 -67386068 + L1PB1 LINE L1 6015 6149 -2 2083 97 7 0 chr1 214808037 214808350 -67385314 - AluSp SINE Alu 0 313 1 1694 157 4 0 chr1 214808929 214809233 -67384431 + AluJb SINE Alu 1 305 0 1980 133 0 10 chr1 214809244 214809538 -67384126 - AluSx SINE Alu -21 291 1 466 246 126 56 chr1 214809857 214810072 -67383592 - MLT1K LTR MaLR -6 582 353 252 326 12 0 chr1 214810108 214810194 -67383470 - MLT1K LTR MaLR -318 270 184 2127 142 24 24 chr1 214810697 214811071 -67382593 + THE1C LTR MaLR 2 375 0 761 297 100 13 chr1 214811152 214811462 -67382202 - L2 LINE L2 -158 3155 2819 249 281 0 47 chr1 214811841 214811905 -67381759 + L2 LINE L2 3200 3260 -12 513 264 67 34 chr1 214812299 214812477 -67381187 - MLT1J LTR MaLR -54 457 274 2248 95 0 0 chr1 214813141 214813447 -67380217 + AluSc SINE Alu 1 306 -3 1889 119 35 3 chr1 214813740 214814026 -67379638 - AluSc SINE Alu -14 295 1 342 83 283 0 chr1 214814214 214814274 -67379390 - MADE1 DNA Mariner -1 79 3 296 285 106 32 chr1 214814279 214814402 -67379262 - MIR SINE MIR -93 169 38 1405 158 161 4 chr1 214814758 214815018 -67378646 + AluJb SINE Alu 1 301 -1 768 129 0 45 chr1 214815842 214815974 -67377690 - FLAM_A SINE Alu -4 129 4 808 221 127 0 chr1 214816822 214817003 -67376661 - MER20 DNA MER1_type 0 219 16 4367 142 116 35 chr1 214817040 214818043 -67375621 + pTR5 LTR ERV1 119 274 -440 261 296 10 0 chr1 214818045 214818143 -67375521 + LTR30 LTR ERV1 544 642 -80 1577 107 0 9 chr1 214818146 214818370 -67375294 + pTR5 LTR ERV1 172 393 -2045 197 239 14 42 chr1 214818371 214818442 -67375222 - MER5A DNA MER1_type -114 75 7 1347 167 71 34 chr1 214818454 214818803 -67374861 + MLT1C LTR MaLR 3 332 -58 829 194 67 0 chr1 214818808 214818973 -67374691 - AluJo SINE Alu -10 302 127 338 43 213 0 chr1 214818973 214819020 -67374644 + MLT1C LTR MaLR 334 390 0 2090 120 37 0 chr1 214819224 214819394 -67374270 - Tigger7 DNA MER2_type -8 2579 2417 1982 134 13 0 chr1 214819394 214819701 -67373963 + AluSq SINE Alu 1 311 -2 2090 120 37 0 chr1 214819701 214819855 -67373809 - Tigger7 DNA MER2_type -170 2417 2243 732 173 346 0 chr1 214819853 214820055 -67373609 + Tigger7 DNA MER2_type 76 347 -386 * 273 209 179 0 chr1 214820052 214820119 -67373545 - Tigger7 DNA MER2_type -625 80 2 * 217 228 0 38 chr1 214821968 214822047 -67371617 + (CGG)n Simple_repeat Simple_repeat 2 77 0 240 232 12 37 chr1 214827471 214827553 -67366111 - L2 LINE L2 -302 2970 2891 1558 135 15 23 chr1 214828395 214828654 -67365010 - AluJo SINE Alu -15 297 41 2036 110 27 3 chr1 214828662 214828961 -67364703 - AluSx SINE Alu -6 306 1 186 43 0 0 chr1 214829472 214829495 -67364169 + (TTCCC)n Simple_repeat Simple_repeat 3 25 0 909 179 97 15 chr1 214830908 214831104 -67362560 + MER58A DNA MER1_type 3 214 -10 185 56 0 56 chr1 214833432 214833468 -67360196 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 692 241 123 35 chr1 214834436 214834697 -67358967 - L1ME3A LINE L1 -30 6140 5857 214 350 37 31 chr1 214835829 214835992 -67357672 - L2 LINE L2 -1220 2094 1931 340 297 146 6 chr1 214836404 214836569 -67357095 + MIR SINE MIR 57 244 -18 795 153 0 23 chr1 214840375 214840506 -67353158 - FLAM_C SINE Alu -14 129 2 278 288 153 0 chr1 214840621 214840732 -67352932 + MIR SINE MIR 58 185 -77 1538 142 38 57 chr1 214845443 214845761 -67347903 - AluJb SINE Alu 0 312 1 2488 148 40 11 chr1 214951443 214951890 -67241774 + MER6 DNA MER2_type 146 865 0 710 279 44 48 chr1 214953239 214953490 -67240174 + MIR SINE MIR 13 262 0 23 0 0 0 chr1 214953698 214953721 -67239943 + AT_rich Low_complexity Low_complexity 1 23 0 338 44 0 0 chr1 214953872 214953917 -67239747 + MADE1 DNA Mariner 36 80 0 344 299 0 0 chr1 214953920 214954017 -67239647 - MIR SINE MIR -18 244 148 460 296 82 27 chr1 214954190 214954424 -67239240 + MIR SINE MIR 10 262 0 195 42 0 0 chr1 214954459 214954483 -67239181 + (CA)n Simple_repeat Simple_repeat 2 25 0 385 344 92 34 chr1 214954925 214955361 -67238303 - L2 LINE L2 -599 2715 2255 413 281 81 19 chr1 214956073 214956233 -67237431 - MIR SINE MIR -59 203 34 28 0 0 0 chr1 214958435 214958463 -67235201 + AT_rich Low_complexity Low_complexity 1 28 0 2366 84 7 0 chr1 214958463 214958771 -67234893 - AluSp SINE Alu -3 310 1 536 241 92 11 chr1 214959627 214959801 -67233863 + MIR SINE MIR 74 261 -1 1593 140 0 157 chr1 214959804 214960211 -67233453 + MER7A DNA MER2_type 3 343 -3 2083 125 0 0 chr1 214960464 214960773 -67232891 - AluSx SINE Alu 0 309 1 424 183 49 0 chr1 214960963 214961045 -67232619 - L1MCa LINE L1 -6320 106 21 503 253 76 13 chr1 214961945 214962103 -67231561 + L3 LINE CR1 1218 1385 -192 1252 123 23 27 chr1 214963146 214963366 -67230298 - MER20 DNA MER1_type 0 219 1 210 250 0 158 chr1 214964211 214964287 -67229377 - L2 LINE L2 -4 3309 3246 470 333 63 54 chr1 214964808 214965255 -67228409 + L2 LINE L2 1880 2330 -984 240 143 0 0 chr1 214965472 214965507 -67228157 + MIR SINE MIR 217 251 -11 226 265 103 77 chr1 214965561 214965678 -67227986 + L3 LINE CR1 1054 1173 -404 338 250 221 19 chr1 214965685 214965893 -67227771 - L1ME4a LINE L1 -87 6034 5785 303 191 0 0 chr1 214965983 214966051 -67227613 + (TA)n Simple_repeat Simple_repeat 2 69 0 202 200 0 0 chr1 214966093 214966128 -67227536 + (CATA)n Simple_repeat Simple_repeat 2 36 0 322 261 0 33 chr1 214966128 214966220 -67227444 + L1MC4 LINE L1 6612 6700 -1342 305 217 12 0 chr1 214966244 214966327 -67227337 + (TA)n Simple_repeat Simple_repeat 2 85 0 230 245 0 61 chr1 214966333 214966431 -67227233 - L1MC4 LINE L1 -1337 6705 6614 192 268 0 0 chr1 214966437 214966519 -67227145 + (TA)n Simple_repeat Simple_repeat 2 83 0 482 356 23 0 chr1 214966519 214966696 -67226968 - MIR SINE MIR -1 261 81 818 95 17 17 chr1 214967247 214967363 -67226301 - FLAM_C SINE Alu -27 116 1 692 184 0 37 chr1 214967703 214967866 -67225798 - L1MA3 LINE L1 0 6305 6149 1682 126 55 41 chr1 214967901 214968194 -67225470 + AluSx SINE Alu 16 312 0 2636 145 16 40 chr1 214968197 214968693 -67224971 - L1MA3 LINE L1 -144 6161 5678 489 270 48 58 chr1 214969433 214969622 -67224042 - MER5A DNA MER1_type 0 189 3 252 411 7 0 chr1 214969793 214969934 -67223730 - L3 LINE CR1 -90 1487 1346 234 229 0 0 chr1 214970544 214970614 -67223050 + (TA)n Simple_repeat Simple_repeat 2 71 0 1907 169 0 3 chr1 214970757 214971070 -67222594 - AluJb SINE Alu 0 312 1 195 208 20 40 chr1 214972688 214972789 -67220875 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 2037 139 13 0 chr1 214973133 214973435 -67220229 - AluSx SINE Alu -5 307 2 1911 131 11 0 chr1 214973445 214973778 -67219886 - AluSx SINE Alu 0 336 1 281 167 0 56 chr1 214973798 214973870 -67219794 - MER116 DNA Mariner -7 73 6 1920 163 69 27 chr1 214974158 214974562 -67219102 - MSTC LTR MaLR -6 422 2 1136 248 53 64 chr1 214975032 214975455 -67218209 + MLT2C2 LTR ERVL 1 427 -37 249 33 0 0 chr1 214975455 214975485 -67218179 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 248 0 31 0 chr1 214975488 214975520 -67218144 + (CA)n Simple_repeat Simple_repeat 2 34 0 1136 248 53 64 chr1 214975520 214975559 -67218105 + MLT2C2 LTR ERVL 429 462 -2 269 282 325 5 chr1 214975570 214975758 -67217906 - MIR SINE MIR -1 261 14 1543 233 40 25 chr1 214976791 214977190 -67216474 - MLT1I LTR MaLR -2 407 3 305 270 74 43 chr1 214978162 214978303 -67215361 + HERVL LTR ERVL 1707 1812 -3842 390 344 65 0 chr1 214978343 214978529 -67215135 + HERVL LTR ERVL 2889 3086 -2568 393 352 54 84 chr1 214980276 214980911 -67212753 - L2 LINE L2 0 3272 2661 679 185 43 0 chr1 214981084 214981246 -67212418 - L1M1 LINE L1 -4792 2773 2605 293 316 10 20 chr1 214981346 214981444 -67212220 + MER5B DNA MER1_type 1 97 -81 329 277 67 25 chr1 214981672 214981791 -67211873 - L1M4 LINE L1 -3758 3807 3684 1594 223 112 58 chr1 214981796 214982465 -67211199 - L1M4 LINE L1 -4288 3277 2573 598 229 0 0 chr1 214982469 214982578 -67211086 - AluJo/FRAM SINE Alu -24 288 180 1091 184 0 0 chr1 214982578 214982763 -67210901 - AluSg/x SINE Alu -7 305 121 29914 110 13 28 chr1 214982766 214989026 -67204638 - L1PA7 LINE L1 -8 6461 206 558 256 42 37 chr1 214989014 214989229 -67204435 - L1M4 LINE L1 -5449 2116 1901 * 235 333 34 0 chr1 214989374 214989491 -67204173 - L1M4 LINE L1 -5490 1996 1876 988 338 9 33 chr1 214989909 214990362 -67203302 - L1M4 LINE L1 -5506 1980 1539 1629 117 0 0 chr1 214990366 214990588 -67203076 - AluSg/x SINE Alu -8 304 83 815 235 44 25 chr1 215093568 215093772 -67099892 + MER3 DNA MER1_type 2 209 0 3678 55 0 11 chr1 215094636 215095089 -67098575 - LTR7 LTR ERV1 -2 448 1 2668 63 45 13 chr1 215095089 215095469 -67098195 - HERVH LTR ERV1 0 7713 7322 1475 120 19 0 chr1 215095467 215095683 -67097981 - HERVH LTR ERV1 -1894 5819 5600 * 4431 136 5 1 chr1 215095684 215096344 -67097320 - HERVH LTR ERV1 -2564 5149 4488 3459 111 0 6 chr1 215096346 215096851 -67096813 - HERVH LTR ERV1 -3720 3993 3492 987 120 7 0 chr1 215096841 215096991 -67096673 - HERVH LTR ERV1 -4423 3290 3140 * 17262 99 19 32 chr1 215096970 215100121 -67093543 - HERVH LTR ERV1 -4718 2995 1 3804 40 0 11 chr1 215100123 215100576 -67093088 - LTR7 LTR ERV1 -2 448 1 3794 167 97 43 chr1 215102533 215103295 -67090369 - MER21B LTR ERV1 -60 803 1 1556 138 6 119 chr1 215104452 215104771 -67088893 - AluJb SINE Alu -22 290 8 512 235 42 0 chr1 215104943 215105062 -67088602 - MIR SINE MIR 0 262 139 467 273 171 16 chr1 215105071 215105258 -67088406 + MIR SINE MIR 26 241 -21 248 235 0 0 chr1 215105372 215105423 -67088241 + L2 LINE L2 3222 3272 0 26 0 0 0 chr1 215105810 215105836 -67087828 + AT_rich Low_complexity Low_complexity 1 26 0 302 176 27 0 chr1 215105973 215106047 -67087617 + (ATGGTG)n Simple_repeat Simple_repeat 5 80 0 2357 101 0 0 chr1 215106481 215106787 -67086877 - AluSp SINE Alu -6 307 2 291 327 10 39 chr1 215107741 215107845 -67085819 + L2 LINE L2 3168 3268 -4 723 249 103 28 chr1 215109746 215109959 -67083705 + MIR SINE MIR 34 262 0 335 361 91 40 chr1 215110989 215111414 -67082250 - L2 LINE L2 -111 3161 2713 21 36 0 0 chr1 215113219 215113247 -67080417 + AT_rich Low_complexity Low_complexity 1 28 0 1793 204 55 49 chr1 215114444 215114958 -67078706 + Charlie1b DNA MER1_type 6 522 -1 231 387 35 86 chr1 215116270 215116585 -67077079 + L2 LINE L2 2934 3232 -40 222 383 42 25 chr1 215117163 215117283 -67076381 - L2 LINE L2 -2 3270 3149 1168 167 114 0 chr1 215117568 215117795 -67075869 - L1PB3 LINE L1 -3 6151 5899 210 297 16 0 chr1 215117956 215118020 -67075644 + MIR SINE MIR 65 129 -133 1795 228 31 34 chr1 215118031 215118478 -67075186 + MER21B LTR ERV1 1 446 -417 1679 202 42 25 chr1 215118503 215118860 -67074804 - MER21B LTR ERV1 -12 851 489 414 216 0 170 chr1 215118861 215119003 -67074661 + MER21B LTR ERV1 384 573 -358 1103 269 53 9 chr1 215119069 215119389 -67074275 + MER21B LTR ERV1 460 793 -70 333 325 66 59 chr1 215119574 215119794 -67073870 - L3b LINE CR1 -137 1446 1222 2264 103 7 7 chr1 215119794 215120104 -67073560 - AluSx SINE Alu 0 312 3 333 325 66 59 chr1 215120104 215120203 -67073461 - L3b LINE CR1 -361 1222 1125 975 94 0 0 chr1 215120862 215120989 -67072675 + AluSg SINE Alu 1 127 -183 1907 100 8 0 chr1 215120989 215121248 -67072416 + AluSp SINE Alu 35 295 -18 2111 109 0 10 chr1 215122911 215123214 -67070450 - AluSg SINE Alu -10 300 1 500 283 7 21 chr1 215123239 215123384 -67070280 - MIR SINE MIR -85 177 35 21 36 0 0 chr1 215123724 215123752 -67069912 + AT_rich Low_complexity Low_complexity 1 28 0 324 256 0 12 chr1 215125337 215125419 -67068245 + MIR SINE MIR 112 192 -70 2367 104 120 5 chr1 215127475 215127859 -67065805 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr1 215127994 215128015 -67065649 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr1 215128142 215128174 -67065490 + (CA)n Simple_repeat Simple_repeat 2 33 0 711 311 44 9 chr1 215128822 215129047 -67064617 + MIR SINE MIR 7 239 -23 1868 164 0 16 chr1 215130930 215131235 -67062429 - AluSx SINE Alu -12 300 1 977 228 152 6 chr1 215132260 215132616 -67061048 - MER20B DNA MER1_type 0 783 376 514 306 81 10 chr1 215132634 215132843 -67060821 - MER20B DNA MER1_type -516 267 44 200 338 15 0 chr1 215133148 215133216 -67060448 + L2 LINE L2 3204 3272 0 254 208 0 0 chr1 215133479 215133527 -67060137 - MIR3 SINE MIR -11 197 150 237 65 0 0 chr1 215133572 215133603 -67060061 + (CA)n Simple_repeat Simple_repeat 2 32 0 2081 126 10 3 chr1 215134686 215134995 -67058669 - AluSx SINE Alu -1 311 1 850 53 0 18 chr1 215135598 215135711 -67057953 + AluSg/x SINE Alu 198 308 -1 381 289 26 0 chr1 215137651 215137765 -67055899 + MER117 DNA MER1_type 24 140 -57 936 120 0 0 chr1 215138964 215139097 -67054567 + FLAM_C SINE Alu 1 133 0 40 0 0 0 chr1 215139097 215139137 -67054527 + AT_rich Low_complexity Low_complexity 1 40 0 210 147 0 0 chr1 215140253 215140287 -67053377 + MIR SINE MIR 200 233 -29 243 316 102 0 chr1 215140483 215140581 -67053083 - L3 LINE CR1 -75 1502 1395 827 283 8 21 chr1 215140927 215141164 -67052500 + MIR SINE MIR 10 243 -19 2266 66 42 0 chr1 215141259 215141548 -67052116 - AluY SINE Alu -10 301 1 189 0 0 0 chr1 215142026 215142047 -67051617 + (T)n Simple_repeat Simple_repeat 1 21 0 387 236 81 62 chr1 215143183 215143344 -67050320 + MIR SINE MIR 18 181 -81 773 301 62 33 chr1 215143896 215144942 -67048722 - L1ME LINE L1 -372 5790 4724 25 65 0 0 chr1 215145906 215145952 -67047712 + AT_rich Low_complexity Low_complexity 1 46 0 225 226 132 0 chr1 215146050 215146103 -67047561 - L2 LINE L2 -1 3271 3212 339 339 0 8 chr1 215146218 215146336 -67047328 + MIR SINE MIR 64 180 -82 311 344 87 36 chr1 215146760 215146955 -67046709 - MIR SINE MIR -8 254 50 892 262 105 20 chr1 215147768 215148119 -67045545 - L2 LINE L2 0 3313 2933 444 322 81 65 chr1 215148450 215149115 -67044549 - L2 LINE L2 -216 3056 2374 190 349 154 24 chr1 215149152 215149562 -67044102 - L2 LINE L2 -576 2738 2276 445 316 82 54 chr1 215149833 215150187 -67043477 - L3 LINE CR1 -207 1370 1007 185 277 96 12 chr1 215151497 215151580 -67042084 + MIR SINE MIR 172 261 -1 477 50 0 0 chr1 215152795 215152855 -67040809 + (TG)n Simple_repeat Simple_repeat 2 61 0 323 281 35 29 chr1 215152989 215153162 -67040502 - L1M2 LINE L1 -470 5830 5649 22 0 0 0 chr1 215154525 215154547 -67039117 + AT_rich Low_complexity Low_complexity 1 22 0 760 330 117 19 chr1 215154843 215155422 -67038242 + L2 LINE L2 2167 2802 -512 307 243 117 18 chr1 215156708 215156819 -67036845 + L1ME LINE L1 5279 5400 -746 343 318 120 33 chr1 215156860 215157242 -67036422 + L1ME LINE L1 5466 5884 -286 59 92 0 0 chr1 215157299 215157463 -67036201 + AT_rich Low_complexity Low_complexity 1 164 0 2341 100 0 0 chr1 215157727 215158027 -67035637 + AluSq SINE Alu 1 300 -13 29 28 0 0 chr1 215158558 215158594 -67035070 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 215158750 215158774 -67034890 + AT_rich Low_complexity Low_complexity 1 24 0 462 253 110 33 chr1 215159931 215160113 -67033551 + L2 LINE L2 3118 3313 0 1584 160 39 3 chr1 215160123 215160435 -67033229 + MER33 DNA MER1_type 2 324 0 723 245 59 10 chr1 215160453 215160657 -67033007 + MIR SINE MIR 46 259 -3 1140 169 103 19 chr1 215161746 215162013 -67031651 - MER1B DNA MER1_type 0 333 1 294 132 0 0 chr1 215162040 215162093 -67031571 + (TG)n Simple_repeat Simple_repeat 1 53 0 9235 202 61 25 chr1 215162622 215162908 -67030756 - Cheshire DNA MER1_type 0 2420 2146 2029 116 10 13 chr1 215162908 215163218 -67030446 - AluY SINE Alu -2 309 1 9235 202 61 25 chr1 215163218 215165203 -67028461 - Cheshire DNA MER1_type -274 2146 67 2812 184 73 36 chr1 215165408 215165562 -67028102 + L1MC3 LINE L1 6706 6853 -932 236 54 54 0 chr1 215165562 215165599 -67028065 + A-rich Low_complexity Low_complexity 4 42 0 2812 184 73 36 chr1 215165599 215166102 -67027562 + L1MC3 LINE L1 6853 7387 -398 679 13 0 0 chr1 215166207 215166286 -67027378 - L1PA2 LINE L1 -9 6146 6068 268 283 43 43 chr1 215168438 215168530 -67025134 + MIR3 SINE MIR 88 179 -29 972 87 40 0 chr1 215169645 215169795 -67023869 - L1MA3 LINE L1 0 6305 6150 180 0 0 0 chr1 215170448 215170468 -67023196 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 215171669 215171690 -67021974 + AT_rich Low_complexity Low_complexity 1 21 0 250 270 24 103 chr1 215171963 215172089 -67021575 + L2 LINE L2 3190 3305 -8 310 21 43 0 chr1 215172092 215172139 -67021525 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1219 316 94 18 chr1 215172613 215173401 -67020263 - L2 LINE L2 -338 2976 2129 198 346 185 49 chr1 215173497 215174443 -67019221 - L2 LINE L2 -428 2886 1812 249 292 15 0 chr1 215175738 215175803 -67017861 + L2 LINE L2 3248 3313 0 209 314 70 35 chr1 215176426 215176512 -67017152 + MIR SINE MIR 34 122 -86 3118 128 87 0 chr1 215176692 215177177 -67016487 - MER1A DNA MER1_type 0 527 1 236 335 47 47 chr1 215177232 215177402 -67016262 - MER5A DNA MER1_type 0 189 20 317 289 46 33 chr1 215178258 215178410 -67015254 + L3 LINE CR1 966 1119 -458 1840 179 0 3 chr1 215178490 215178798 -67014866 - AluJb SINE Alu -5 307 1 412 192 31 62 chr1 215179403 215179533 -67014131 + MIR SINE MIR 125 250 -12 298 271 9 9 chr1 215180265 215180372 -67013292 + Charlie7 DNA MER1_type 61 167 -2445 2075 98 0 29 chr1 215180589 215180895 -67012769 - AluSg SINE Alu -13 297 1 315 197 0 0 chr1 215181258 215181319 -67012345 - L1MB7 LINE L1 -25 6159 6099 * 3998 247 78 35 chr1 215181305 215183795 -67009869 - L1M4c LINE L1 -2711 3933 1203 576 245 0 0 chr1 215183796 215183898 -67009766 + MER2 DNA MER2_type 1 102 -243 5619 102 23 17 chr1 215183904 215184250 -67009414 + L1PB2 LINE L1 5118 5461 -690 2404 79 102 6 chr1 215184250 215184592 -67009072 + THE1C LTR MaLR 1 375 0 5619 102 23 17 chr1 215184592 215184919 -67008745 + L1PB2 LINE L1 5461 5799 -352 339 25 0 0 chr1 215184919 215184959 -67008705 + (CA)n Simple_repeat Simple_repeat 2 41 0 5619 102 23 17 chr1 215184959 215185271 -67008393 + L1PB2 LINE L1 5799 6108 -43 467 231 100 0 chr1 215185271 215185431 -67008233 + MER2 DNA MER2_type 34 209 -136 25 65 0 0 chr1 215185436 215185482 -67008182 + AT_rich Low_complexity Low_complexity 1 46 0 965 153 50 37 chr1 215185526 215185767 -67007897 - L1M4c LINE L1 -5346 1196 953 1612 214 89 40 chr1 215185796 215186268 -67007396 + MLT1D LTR MaLR 5 499 -6 1668 251 20 24 chr1 215186309 215186764 -67006900 - L1M4c LINE L1 -6085 457 5 310 157 57 29 chr1 215187038 215187108 -67006556 - LTR33A LTR ERVL -6 517 446 591 232 146 46 chr1 215187225 215187631 -67006033 - L1M4 LINE L1 -2919 3227 2769 1829 136 97 24 chr1 215188101 215188440 -67005224 - THE1B LTR MaLR 0 364 1 2230 103 7 3 chr1 215188452 215188753 -67004911 - AluSq SINE Alu -11 302 1 24 0 0 0 chr1 215188834 215188858 -67004806 + AT_rich Low_complexity Low_complexity 1 24 0 209 278 0 0 chr1 215188870 215188924 -67004740 + CT-rich Low_complexity Low_complexity 2 55 0 262 323 30 30 chr1 215189381 215189480 -67004184 + L3 LINE CR1 1391 1489 -88 24 0 0 0 chr1 215190637 215190661 -67003003 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr1 215191274 215191297 -67002367 + (CA)n Simple_repeat Simple_repeat 1 23 0 241 194 31 112 chr1 215191371 215191469 -67002195 + MIR SINE MIR 124 213 -49 23 54 0 0 chr1 215194625 215194662 -66999002 + AT_rich Low_complexity Low_complexity 1 37 0 2178 111 0 35 chr1 215195651 215195966 -66997698 + AluSq SINE Alu 1 304 -9 491 346 88 11 chr1 215196668 215196928 -66996736 - L3b LINE CR1 -18 1565 1286 302 372 128 7 chr1 215196975 215197123 -66996541 + MIR3 SINE MIR 18 183 -25 2003 128 7 0 chr1 215198060 215198348 -66995316 + AluSx SINE Alu 11 300 -12 271 244 122 22 chr1 215198775 215198865 -66994799 - MIR SINE MIR -152 110 12 232 121 0 0 chr1 215199428 215199461 -66994203 + L2 LINE L2 3265 3297 -16 353 253 185 16 chr1 215199518 215199676 -66993988 + MIR3 SINE MIR 9 201 -7 23 33 0 0 chr1 215199896 215199926 -66993738 + AT_rich Low_complexity Low_complexity 1 30 0 240 213 16 0 chr1 215200437 215200498 -66993166 + L1MC5 LINE L1 7840 7901 -60 22 0 0 0 chr1 215201591 215201613 -66992051 + AT_rich Low_complexity Low_complexity 1 22 0 202 96 77 19 chr1 215201922 215201974 -66991690 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 182 292 72 104 chr1 215202191 215202623 -66991041 - L2 LINE L2 -1105 2209 1792 * 332 400 14 0 chr1 215202622 215202767 -66990897 - L2 LINE L2 -4 3268 3122 212 320 101 36 chr1 215202872 215203119 -66990545 - L2 LINE L2 -357 2957 2695 519 244 69 6 chr1 215203241 215203401 -66990263 - L2 LINE L2 -954 2360 2191 584 328 157 40 chr1 215203402 215204006 -66989658 - L2 LINE L2 -2064 1250 529 189 0 0 0 chr1 215204006 215204027 -66989637 + (GA)n Simple_repeat Simple_repeat 2 22 0 584 328 157 40 chr1 215204027 215204218 -66989446 - L2 LINE L2 -2785 529 362 656 143 0 0 chr1 215205273 215205378 -66988286 + L1PA16 LINE L1 6051 6155 -11 312 349 23 29 chr1 215206218 215206393 -66987271 - MIR SINE MIR -51 211 39 260 264 180 44 chr1 215206471 215206764 -66986900 - MLT1L LTR MaLR -18 597 210 25 31 0 0 chr1 215207142 215207174 -66986490 + AT_rich Low_complexity Low_complexity 1 32 0 2694 135 30 9 chr1 215208333 215208771 -66984893 + L1PA16 LINE L1 5711 6157 -9 324 0 0 0 chr1 215208895 215208931 -66984733 + (CA)n Simple_repeat Simple_repeat 1 36 0 771 311 128 70 chr1 215209783 215210714 -66982950 + L3 LINE CR1 564 1548 -29 596 271 61 6 chr1 215210800 215210981 -66982683 + MIR SINE MIR 72 262 0 392 39 0 0 chr1 215212600 215212651 -66981013 - MADE1 DNA Mariner 0 80 30 283 315 80 31 chr1 215212765 215212927 -66980737 + L2 LINE L2 2697 2866 -448 1892 134 31 64 chr1 215213004 215213392 -66980272 - THE1C LTR MaLR 0 375 1 2958 128 34 8 chr1 215214542 215214898 -66978766 - L1PB4 LINE L1 -8 6148 5803 288 0 0 0 chr1 215214898 215214930 -66978734 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chr1 215214931 215214967 -66978697 + (TA)n Simple_repeat Simple_repeat 2 37 0 2958 128 34 8 chr1 215214967 215215107 -66978557 - L1PB4 LINE L1 -352 5804 5637 700 140 7 15 chr1 215215245 215215381 -66978283 + GA-rich Low_complexity Low_complexity 3 137 0 28 61 0 0 chr1 215216112 215216161 -66977503 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr1 215216210 215216242 -66977422 + AT_rich Low_complexity Low_complexity 1 32 0 2426 73 0 3 chr1 215216391 215216692 -66976972 + AluY SINE Alu 1 300 -11 23 0 0 0 chr1 215217442 215217465 -66976199 + AT_rich Low_complexity Low_complexity 1 23 0 301 296 0 0 chr1 215217469 215217540 -66976124 - L2 LINE L2 -22 3291 3221 306 0 0 0 chr1 215218143 215218177 -66975487 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 486 382 61 26 chr1 215218558 215219210 -66974454 + L2 LINE L2 2001 2675 -639 212 305 137 0 chr1 215219268 215219363 -66974301 + L2 LINE L2 2946 3053 -219 189 0 0 0 chr1 215219558 215219579 -66974085 + (TAA)n Simple_repeat Simple_repeat 2 22 0 393 176 15 0 chr1 215219987 215220055 -66973609 - Charlie3 DNA MER1_type -2641 69 1 2366 85 0 7 chr1 215220449 215220755 -66972909 + AluY SINE Alu 1 304 -7 956 288 194 20 chr1 215224257 215224926 -66968738 - L2 LINE L2 0 3313 2551 822 257 271 37 chr1 215224950 215225437 -66968227 - L2 LINE L2 -1133 2181 1581 1755 252 59 15 chr1 215225445 215225969 -66967695 - L2 LINE L2 -2164 1150 604 27 87 0 0 chr1 215226071 215226140 -66967524 + AT_rich Low_complexity Low_complexity 1 69 0 231 221 243 21 chr1 215226907 215227047 -66966617 - L1ME4a LINE L1 -92 6029 5859 695 169 0 8 chr1 215227111 215227273 -66966391 + L1PA15 LINE L1 6024 6184 0 356 330 129 0 chr1 215227296 215227490 -66966174 + MIR SINE MIR 40 258 -4 628 259 62 74 chr1 215227503 215227839 -66965825 - L1ME4a LINE L1 -273 5848 5517 308 183 0 73 chr1 215228994 215229076 -66964588 + L1ME2 LINE L1 6081 6156 -8 1223 248 66 25 chr1 215229101 215229509 -66964155 + L1MC4 LINE L1 7608 8032 -10 1180 313 68 30 chr1 215230245 215230743 -66962921 - MLT1K LTR MaLR -3 585 69 240 103 0 26 chr1 215230949 215230988 -66962676 - LTR18B LTR ERVL -105 509 472 1962 126 132 68 chr1 215230988 215231259 -66962405 - LTR18B LTR ERVL -114 500 185 186 103 0 0 chr1 215231259 215231288 -66962376 + (CATGC)n Simple_repeat Simple_repeat 4 32 0 1962 126 132 68 chr1 215231288 215231486 -66962178 - LTR18B LTR ERVL -429 185 1 763 174 41 87 chr1 215232411 215232606 -66961058 - MER5A DNA MER1_type -1 188 3 22 80 0 0 chr1 215233328 215233378 -66960286 + AT_rich Low_complexity Low_complexity 1 50 0 928 255 106 41 chr1 215234081 215234514 -66959150 - MLT1H LTR MaLR -13 536 1 27 49 0 0 chr1 215234625 215234666 -66958998 + AT_rich Low_complexity Low_complexity 1 41 0 224 234 13 117 chr1 215235688 215235765 -66957899 + L2 LINE L2 3204 3272 0 184 303 0 45 chr1 215236475 215236564 -66957100 + L2 LINE L2 996 1080 -2234 602 345 14 0 chr1 215236631 215236840 -66956824 - MIR SINE MIR -17 245 34 337 329 84 47 chr1 215236869 215237083 -66956581 + L2 LINE L2 1119 1324 -1990 1150 173 85 88 chr1 215237083 215237458 -66956206 - MLT1A2 LTR MaLR 0 374 1 337 329 84 47 chr1 215237458 215237708 -66955956 + L2 LINE L2 1324 1600 -1714 920 8 24 16 chr1 215238607 215238733 -66954931 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 228 35 0 0 chr1 215239972 215240001 -66953663 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 218 323 15 0 chr1 215241070 215241135 -66952529 - L2 LINE L2 -8 3305 3240 888 199 23 77 chr1 215241750 215241971 -66951693 + MER63A DNA MER1_type 1 209 -1 21 57 0 0 chr1 215244185 215244220 -66949444 + AT_rich Low_complexity Low_complexity 1 35 0 201 240 40 0 chr1 215246578 215246628 -66947036 + (TATG)n Simple_repeat Simple_repeat 1 52 0 31 44 0 0 chr1 215247483 215247528 -66946136 + AT_rich Low_complexity Low_complexity 1 45 0 310 286 87 32 chr1 215248173 215248299 -66945365 + L2 LINE L2 3180 3312 -1 7806 130 43 80 chr1 215248456 215249146 -66944518 + L1MA6 LINE L1 3687 4401 -1899 780 243 33 0 chr1 215249146 215249357 -66944307 - MER8 DNA MER2_type -2 343 4 7806 130 43 80 chr1 215249357 215251174 -66942490 + L1MA6 LINE L1 4401 6300 0 184 238 48 60 chr1 215251426 215251510 -66942154 + MIR SINE MIR 118 200 -62 404 389 52 8 chr1 215252295 215252547 -66941117 - L2 LINE L2 -421 2893 2631 263 296 114 75 chr1 215252552 215252992 -66940672 - MLT1J LTR MaLR -11 500 44 818 302 62 27 chr1 215253053 215253421 -66940243 - L2 LINE L2 -718 2596 2216 254 329 272 0 chr1 215254355 215254513 -66939151 - MIR SINE MIR -61 201 1 274 324 28 66 chr1 215254538 215254751 -66938913 + L3 LINE CR1 1370 1574 -3 322 256 19 81 chr1 215256090 215256250 -66937414 + MIR SINE MIR 99 248 -14 263 314 103 30 chr1 215256380 215256616 -66937048 - MIR SINE MIR -3 259 13 204 273 136 36 chr1 215258351 215258461 -66935203 - L3b LINE CR1 -178 1405 1285 1570 53 0 0 chr1 215258957 215259145 -66934519 - AluY SINE Alu -19 292 105 255 267 124 36 chr1 215259378 215259626 -66934038 - L1ME LINE L1 -209 5912 5600 201 94 0 0 chr1 215259626 215259658 -66934006 + (CA)n Simple_repeat Simple_repeat 2 33 0 255 267 124 36 chr1 215259658 215259716 -66933948 - L1ME LINE L1 -521 5600 5549 216 0 0 0 chr1 215259900 215259924 -66933740 + (A)n Simple_repeat Simple_repeat 1 24 0 240 219 50 118 chr1 215260008 215260127 -66933537 + MIR SINE MIR 75 185 -77 281 361 91 56 chr1 215261285 215261659 -66932005 - L2 LINE L2 -19 3253 2867 300 323 96 73 chr1 215261919 215262547 -66931117 - L2 LINE L2 -946 2368 1727 223 330 135 20 chr1 215262572 215262772 -66930892 - L2 LINE L2 -1726 1588 1366 2545 46 0 3 chr1 215262839 215263145 -66930519 - AluY SINE Alu -6 305 1 1334 223 21 7 chr1 215263232 215263523 -66930141 + AluJo SINE Alu 1 295 -17 26 30 0 0 chr1 215263565 215263598 -66930066 + AT_rich Low_complexity Low_complexity 1 33 0 666 322 110 16 chr1 215264102 215264475 -66929189 - MLT1K LTR MaLR -4 584 177 22 0 0 0 chr1 215265283 215265305 -66928359 + AT_rich Low_complexity Low_complexity 1 22 0 2081 114 0 7 chr1 215266124 215266423 -66927241 - AluSx SINE Alu -15 297 1 200 278 0 0 chr1 215268248 215268302 -66925362 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 330 318 48 0 chr1 215268405 215268531 -66925133 + MIR SINE MIR 130 261 -1 826 94 0 0 chr1 215269065 215269182 -66924482 - L1PA13 LINE L1 0 6163 6047 3000 161 22 7 chr1 215270344 215270891 -66922773 + L1MB7 LINE L1 5621 6175 -9 190 269 13 77 chr1 215270901 215270979 -66922685 - L2 LINE L2 -44 3228 3156 1316 327 127 15 chr1 215272671 215273889 -66919775 - L2 LINE L2 -61 3252 1900 22 35 0 0 chr1 215275596 215275625 -66918039 + AT_rich Low_complexity Low_complexity 1 29 0 245 269 150 57 chr1 215275958 215276397 -66917267 + L1M4 LINE L1 2678 3157 -2989 22 0 0 0 chr1 215277746 215277768 -66915896 + AT_rich Low_complexity Low_complexity 1 22 0 2748 262 79 39 chr1 215278145 215279503 -66914161 - L2 LINE L2 0 3313 1912 44 35 0 0 chr1 215281208 215281266 -66912398 + AT_rich Low_complexity Low_complexity 1 58 0 186 133 0 0 chr1 215283997 215284027 -66909637 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1034 79 11 13 chr1 215284502 215284515 -66909149 + L1P2 LINE L1 5538 5550 -618 3407 33 17 0 chr1 215284515 215284936 -66908728 - L1PA4 LINE L1 -3 6152 5725 1034 79 11 13 chr1 215284936 215285098 -66908566 + L1PA4 LINE L1 5550 5716 -452 22 0 0 0 chr1 215285700 215285722 -66907942 + AT_rich Low_complexity Low_complexity 1 22 0 356 271 21 0 chr1 215285759 215285855 -66907809 + MER103 DNA DNA 51 148 -18 548 298 168 43 chr1 215287113 215287650 -66906014 + L2 LINE L2 1971 2574 -740 554 252 53 0 chr1 215287734 215287865 -66905799 + L2 LINE L2 3133 3270 -2 1155 117 0 0 chr1 215287889 215288052 -66905612 + AluSg/x SINE Alu 132 294 -18 289 279 0 0 chr1 215288242 215288310 -66905354 - MIR SINE MIR -174 88 21 321 283 33 0 chr1 215290133 215290225 -66903439 - MIR3 SINE MIR -47 161 67 185 356 0 0 chr1 215290238 215290283 -66903381 - L2 LINE L2 -18 3254 3210 554 351 40 30 chr1 215290376 215290704 -66902960 - MLT1K LTR MaLR -113 475 145 399 224 0 24 chr1 215290762 215290847 -66902817 - L2 LINE L2 0 3313 3231 193 340 52 41 chr1 215290999 215291096 -66902568 - MIR SINE MIR -118 144 47 572 248 53 8 chr1 215291611 215291744 -66901920 - MER63 DNA MER1_type -297 765 1 3051 171 82 46 chr1 215291919 215292702 -66900962 - L1MC4 LINE L1 -207 7835 7025 2965 112 61 1 chr1 215292704 215293158 -66900506 - MER1A DNA MER1_type 0 529 1 677 232 30 24 chr1 215293169 215293337 -66900327 - L1MC4 LINE L1 -1026 7016 6848 652 292 46 4 chr1 215293524 215293764 -66899900 - MIR SINE MIR -5 257 8 3173 139 11 18 chr1 215293865 215294432 -66899232 - L1PA13 LINE L1 -7 6156 5594 22 0 0 0 chr1 215294596 215294618 -66899046 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 215295961 215295982 -66897682 + AT_rich Low_complexity Low_complexity 1 21 0 238 195 0 0 chr1 215297812 215297853 -66895811 - MER91 DNA MER1_type -12 184 144 185 222 25 62 chr1 215299183 215299264 -66894400 + L2 LINE L2 3158 3235 -78 14387 126 42 16 chr1 215299457 215300369 -66893295 - Tigger1 DNA MER2_type -1 2417 1529 1483 122 49 20 chr1 215300369 215300615 -66893049 - AluSx SINE Alu -8 304 52 14387 126 42 16 chr1 215300615 215302060 -66891604 - Tigger1 DNA MER2_type -889 1529 1 302 352 176 16 chr1 215302549 215302742 -66890922 + MIR SINE MIR 20 243 -19 297 318 27 103 chr1 215305272 215305495 -66888169 + MIR SINE MIR 20 225 -37 1921 90 72 4 chr1 215306124 215306402 -66887262 + AluSq SINE Alu 1 297 -16 236 220 0 0 chr1 215307547 215307597 -66886067 + L3 LINE CR1 1527 1576 -1 262 338 90 21 chr1 215307740 215307885 -66885779 + MER5A DNA MER1_type 13 167 -22 * 458 294 44 15 chr1 215307758 215307894 -66885770 - MER5A DNA MER1_type -25 164 25 39 60 0 0 chr1 215307950 215308017 -66885647 + AT_rich Low_complexity Low_complexity 1 67 0 788 283 168 11 chr1 215308187 215308571 -66885093 + L1ME4a LINE L1 5265 5757 -364 21 36 0 0 chr1 215308571 215308599 -66885065 + AT_rich Low_complexity Low_complexity 1 28 0 788 283 168 11 chr1 215308599 215308646 -66885018 + L1ME4a LINE L1 5757 5795 -326 440 253 0 22 chr1 215308682 215308773 -66884891 - L2 LINE L2 0 3313 3225 228 337 59 89 chr1 215308819 215308988 -66884676 - MER5B DNA MER1_type -11 167 4 236 250 0 0 chr1 215309010 215309074 -66884590 + L1ME4a LINE L1 5945 6008 -113 41721 36 15 0 chr1 215309354 215315425 -66878239 - L1PA3 LINE L1 0 6155 1 576 280 144 31 chr1 215315429 215315783 -66877881 - MER20B DNA MER1_type -386 397 4 2466 63 0 13 chr1 215316105 215316407 -66877257 - AluY SINE Alu -13 298 1 242 309 48 0 chr1 215316407 215316482 -66877182 - L3b LINE CR1 -217 1366 1285 404 286 173 8 chr1 215317129 215317287 -66876377 - MIR SINE MIR -57 151 9 671 268 105 21 chr1 215317581 215317820 -66875844 + MIR SINE MIR 3 261 -1 3236 148 41 11 chr1 215319185 215319799 -66873865 - L1MC1 LINE L1 -1 6332 5701 1071 140 25 0 chr1 215320170 215320327 -66873337 + AluSc SINE Alu 134 294 -15 2830 71 3 11 chr1 215320631 215321013 -66872651 - L1PA7 LINE L1 -3 6151 5773 6169 65 40 1 chr1 215321013 215322060 -66871604 + L1P3 LINE L1 4436 5518 -636 1850 65 4 0 chr1 215322191 215322437 -66871227 + L1P3 LINE L1 5521 5767 -387 225 159 0 0 chr1 215323546 215323590 -66870074 + (TA)n Simple_repeat Simple_repeat 1 44 0 257 238 70 21 chr1 215325006 215325149 -66868515 + L1MC5 LINE L1 7696 7845 -116 1816 123 0 0 chr1 215325291 215325535 -66868129 + AluSg/x SINE Alu 67 310 0 324 215 13 38 chr1 215326192 215326271 -66867393 - MIR3 SINE MIR -124 84 8 1011 120 53 0 chr1 215327620 215327770 -66865894 + AluSp/q SINE Alu 155 312 -1 794 266 58 0 chr1 215328421 215328628 -66865036 - L2 LINE L2 -1 3312 3094 1097 83 0 0 chr1 215328751 215328883 -66864781 + AluY SINE Alu 1 132 -179 2126 114 7 7 chr1 215328887 215329185 -66864479 + AluY SINE Alu 1 298 -13 468 300 244 5 chr1 215329185 215329484 -66864180 - L2 LINE L2 -312 3001 2633 28 71 0 0 chr1 215329488 215329544 -66864120 + AT_rich Low_complexity Low_complexity 1 56 0 234 326 8 39 chr1 215333316 215333445 -66860219 - MIR SINE MIR -60 202 78 289 261 106 42 chr1 215334589 215334731 -66858933 - L2 LINE L2 0 3313 3163 183 129 0 0 chr1 215335209 215335240 -66858424 + (CACCC)n Simple_repeat Simple_repeat 5 35 0 266 248 34 17 chr1 215337798 215337915 -66855749 - Charlie2a DNA MER1_type -44 2818 2700 538 232 113 0 chr1 215337924 215338092 -66855572 - Charlie2a DNA MER1_type -1204 1658 1472 1924 120 0 0 chr1 215338148 215338407 -66855257 + AluSx SINE Alu 40 298 -14 441 267 67 33 chr1 215338528 215338738 -66854926 - Charlie2a DNA MER1_type -2565 217 1 393 22 0 0 chr1 215338859 215338905 -66854759 + (CA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr1 215342737 215342762 -66850902 + AT_rich Low_complexity Low_complexity 1 25 0 312 316 37 9 chr1 215342906 215343046 -66850618 - MIR SINE MIR -61 147 27 295 301 66 0 chr1 215343305 215343441 -66850223 - MER103 DNA DNA -2 164 20 742 234 104 5 chr1 215344220 215344412 -66849252 - MER58A DNA MER1_type -5 219 9 236 322 11 11 chr1 215344757 215344844 -66848820 + L2 LINE L2 2263 2349 -965 260 202 0 83 chr1 215344867 215344951 -66848713 + MLT1J LTR MaLR 104 180 -331 534 184 15 15 chr1 215345080 215345216 -66848448 + GA-rich Low_complexity Low_complexity 4 139 0 242 294 268 10 chr1 215345377 215345676 -66847988 + L2 LINE L2 2371 2746 -568 1120 298 51 35 chr1 215345726 215346097 -66847567 + MLT2F LTR ERVL 14 394 -269 1365 201 86 11 chr1 215346097 215346445 -66847219 + MLT1A2 LTR MaLR 1 374 0 1120 298 51 35 chr1 215346445 215346503 -66847161 + MLT2F LTR ERVL 394 450 -213 799 255 98 11 chr1 215346574 215346686 -66846978 + ERVL LTR ERVL 352 453 -5311 402 21 0 0 chr1 215346686 215346733 -66846931 + (CA)n Simple_repeat Simple_repeat 2 48 0 799 255 98 11 chr1 215346733 215347063 -66846601 + ERVL LTR ERVL 453 912 -4852 510 227 87 49 chr1 215347063 215347248 -66846416 + MER5C DNA MER1_type 133 324 0 336 310 41 28 chr1 215347254 215347399 -66846265 - MIR SINE MIR -87 175 29 1898 135 70 17 chr1 215348408 215348764 -66844900 + THE1C LTR MaLR 1 375 0 237 222 0 37 chr1 215348800 215348854 -66844810 - L2 LINE L2 0 3313 3262 21 36 0 0 chr1 215348912 215348940 -66844724 + AT_rich Low_complexity Low_complexity 1 28 0 355 308 33 8 chr1 215349023 215349143 -66844521 - MLT1J LTR MaLR -242 269 147 1757 145 62 24 chr1 215349496 215349868 -66843796 - MLT1B LTR MaLR -4 386 1 204 399 89 0 chr1 215350305 215350473 -66843191 - L2 LINE L2 -1869 1445 1263 1120 233 70 18 chr1 215350780 215351166 -66842498 - L1MB8 LINE L1 -1 6177 5772 731 153 15 29 chr1 215351168 215351305 -66842359 - AluJo SINE Alu -177 135 1 1659 179 70 26 chr1 215351316 215352012 -66841652 - L1MB8 LINE L1 -404 5774 5031 2482 62 7 0 chr1 215352012 215352316 -66841348 + AluY SINE Alu 1 306 -5 1659 179 70 26 chr1 215352316 215352351 -66841313 - L1MB8 LINE L1 -1147 5031 4999 812 102 0 55 chr1 215352355 215352482 -66841182 - AluSg/x SINE Alu -19 293 174 622 252 6 0 chr1 215352485 215352644 -66841020 - L1MB8 LINE L1 -1144 5002 4843 777 207 25 5 chr1 215352646 215352844 -66840820 - L1MB8 LINE L1 -1383 4763 4562 1292 211 7 51 chr1 215352894 215353188 -66840476 + AluJo SINE Alu 30 310 -2 380 321 62 57 chr1 215353228 215353437 -66840227 + MIR SINE MIR 13 222 -40 25 0 0 0 chr1 215356524 215356549 -66837115 + AT_rich Low_complexity Low_complexity 1 25 0 1729 169 76 14 chr1 215356655 215357022 -66836642 - MLT1B LTR MaLR 0 390 1 272 194 21 118 chr1 215357072 215357165 -66836499 + L2 LINE L2 3230 3313 0 3461 101 20 6 chr1 215358250 215358756 -66834908 + MER75 DNA T2_type 2 514 0 521 283 106 34 chr1 215359010 215359247 -66834417 - MIR SINE MIR 0 262 9 205 191 0 0 chr1 215361019 215361061 -66832603 - MIR SINE MIR -66 142 101 1754 201 96 9 chr1 215361364 215361792 -66831872 + MLT1C LTR MaLR 3 467 0 188 350 55 55 chr1 215361887 215362070 -66831594 - L3 LINE CR1 -1360 217 35 229 283 92 13 chr1 215362529 215362681 -66830983 - L1ME LINE L1 -386 5735 5572 2190 138 0 0 chr1 215362886 215363190 -66830474 - AluSp SINE Alu -8 305 2 5976 59 4 12 chr1 215363204 215363982 -66829682 + L1PA5 LINE L1 5382 6153 -1 189 354 61 12 chr1 215364002 215364084 -66829580 + L2 LINE L2 3187 3272 0 363 319 65 49 chr1 215365117 215365302 -66828362 - MIR SINE MIR -61 201 14 350 125 0 0 chr1 215365584 215365640 -66828024 + AluJb SINE Alu 90 145 -157 1535 282 90 15 chr1 215365776 215366365 -66827299 - MLT2F LTR ERVL 0 663 31 24 0 0 0 chr1 215367844 215367868 -66825796 + AT_rich Low_complexity Low_complexity 1 24 0 14273 24 1 0 chr1 215368026 215370468 -66823196 + L1PA4 LINE L1 3707 6152 -3 258 305 103 37 chr1 215370787 215370962 -66822702 - MIR3 SINE MIR -68 140 4 23 0 0 0 chr1 215371116 215371139 -66822525 + AT_rich Low_complexity Low_complexity 1 23 0 323 302 58 29 chr1 215371401 215371540 -66822124 - L2 LINE L2 -583 2731 2589 1765 209 74 45 chr1 215371703 215372286 -66821378 - MER92B LTR ERV1 -7 629 30 868 311 45 26 chr1 215372597 215373060 -66820604 - L2 LINE L2 -1 3312 2841 327 218 18 73 chr1 215373133 215373243 -66820421 - MIR SINE MIR -118 144 41 932 189 16 0 chr1 215373549 215373739 -66819925 + L1PBa LINE L1 3 195 -6668 3136 128 4 15 chr1 215373744 215374460 -66819204 + L1PBa LINE L1 636 1492 -5371 1491 79 68 32 chr1 215374462 215374741 -66818923 - L1PBa LINE L1 -4681 2182 1894 * 2147 222 8 24 chr1 215374738 215375373 -66818291 + L1 LINE L1 2994 3618 -2528 3723 113 19 57 chr1 215375475 215376105 -66817559 + MER41A-int LTR ERV1 1 606 -5340 354 23 0 0 chr1 215376105 215376148 -66817516 + (TC)n Simple_repeat Simple_repeat 1 43 0 11455 157 79 55 chr1 215376149 215379621 -66814043 + MER41A-int LTR ERV1 2765 5944 -2 3765 84 59 0 chr1 215379621 215380144 -66813520 + MER41A LTR ERV1 1 554 0 356 279 64 31 chr1 215380144 215380297 -66813367 - MIR SINE MIR -65 143 20 344 301 63 30 chr1 215381314 215381535 -66812129 + MIR SINE MIR 18 241 -21 2403 158 95 0 chr1 215382261 215382722 -66810942 + MLT1D LTR MaLR 1 505 0 374 165 67 103 chr1 215382780 215382841 -66810823 + MER53 DNA DNA 1 63 -126 1712 186 45 0 chr1 215382841 215383132 -66810532 + AluJo SINE Alu 3 306 -6 374 165 67 103 chr1 215383132 215383264 -66810400 + MER53 DNA DNA 63 187 -2 183 263 128 83 chr1 215383654 215383787 -66809877 + L2 LINE L2 2305 2443 -871 723 279 114 25 chr1 215384316 215384412 -66809252 + MLT1J1 LTR MaLR 5 91 -355 1244 199 68 65 chr1 215384412 215384673 -66808991 - MLT2D LTR ERVL 0 414 150 360 0 0 0 chr1 215384673 215384713 -66808951 + (CA)n Simple_repeat Simple_repeat 2 41 0 1244 199 68 65 chr1 215384713 215384864 -66808800 - MLT2D LTR ERVL -264 150 1 723 279 114 25 chr1 215384864 215385169 -66808495 + MLT1J1 LTR MaLR 91 442 -4 915 182 81 0 chr1 215385589 215385787 -66807877 - L1PA16 LINE L1 -7 6159 5946 262 258 113 38 chr1 215385842 215386001 -66807663 - HAL1 LINE L1 -58 2449 2279 300 326 20 0 chr1 215386226 215386324 -66807340 - HAL1 LINE L1 -546 1961 1862 566 250 66 62 chr1 215386766 215387010 -66806654 + MLT1J2 LTR MaLR 64 308 -142 545 264 0 0 chr1 215387038 215387148 -66806516 - MER81 DNA DNA 0 114 5 395 176 47 12 chr1 215387178 215387263 -66806401 + MLT1J2 LTR MaLR 362 449 -1 665 276 44 40 chr1 215389311 215389539 -66804125 + MIR SINE MIR 18 246 -16 180 0 0 0 chr1 215389555 215389575 -66804089 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2485 64 0 0 chr1 215389652 215389949 -66803715 + AluY SINE Alu 15 311 0 1506 164 12 91 chr1 215391945 215392275 -66801389 - AluJo SINE Alu -4 308 5 653 263 57 24 chr1 215392281 215392490 -66801174 - MIR SINE MIR -39 223 8 21 0 0 0 chr1 215392675 215392696 -66800968 + AT_rich Low_complexity Low_complexity 1 21 0 521 283 40 23 chr1 215392974 215393147 -66800517 - MIR3 SINE MIR -19 189 14 2692 225 73 53 chr1 215393371 215394571 -66799093 - L1MC5 LINE L1 -105 7856 6633 2056 144 13 0 chr1 215394801 215395099 -66798565 - AluSx SINE Alu -10 302 1 25 51 0 0 chr1 215395280 215395319 -66798345 + AT_rich Low_complexity Low_complexity 1 39 0 365 303 102 40 chr1 215395467 215395790 -66797874 - MLT1J LTR MaLR -49 462 120 1903 149 35 35 chr1 215396084 215396459 -66797205 - THE1C LTR MaLR 0 375 1 9611 105 40 27 chr1 215396462 215397107 -66796557 - THE1C-int LTR MaLR -3 1577 942 3925 99 79 2 chr1 215397107 215397701 -66795963 + MER51C LTR ERV1 1 640 0 9611 105 40 27 chr1 215397701 215398612 -66795052 - THE1C-int LTR MaLR -638 942 1 1869 165 35 37 chr1 215398612 215398988 -66794676 - THE1C LTR MaLR 0 375 1 511 309 40 46 chr1 215399023 215399347 -66794317 + L1M4 LINE L1 4022 4343 -1803 462 238 23 57 chr1 215399862 215400021 -66793643 + LTR41 LTR ERVL 39 186 -587 306 289 58 10 chr1 215400387 215400491 -66793173 + L1ME4a LINE L1 5974 6082 -39 2104 129 48 28 chr1 215400504 215400861 -66792803 - THE1B LTR MaLR 0 364 1 11775 98 2 1 chr1 215400863 215402438 -66791226 - THE1B-int LTR MaLR -2 1578 1 2171 106 50 34 chr1 215402439 215402796 -66790868 - THE1B LTR MaLR -1 363 1 1626 138 68 0 chr1 215402796 215403092 -66790572 + L1MC1 LINE L1 5290 5605 -728 * 2097 158 101 25 chr1 215403088 215403575 -66790089 + L1MC1 LINE L1 5808 6331 -2 29 28 0 0 chr1 215403597 215403633 -66790031 + AT_rich Low_complexity Low_complexity 1 36 0 398 331 20 0 chr1 215403639 215403787 -66789877 - L2 LINE L2 0 3313 3163 184 213 197 66 chr1 215403790 215403912 -66789752 - L2 LINE L2 -808 2506 2369 2739 7 0 0 chr1 215404245 215404543 -66789121 - AluY SINE Alu -13 298 1 1352 120 50 0 chr1 215405003 215405203 -66788461 - AluSg/x SINE Alu -2 310 101 1384 203 72 29 chr1 215405637 215405986 -66787678 + MER67A LTR ERV1 180 543 0 1405 157 108 42 chr1 215405988 215406320 -66787344 + MLT1D LTR MaLR 152 505 0 35 0 0 0 chr1 215408182 215408217 -66785447 + AT_rich Low_complexity Low_complexity 1 35 0 32253 49 3 1 chr1 215408465 215414594 -66779070 - L1PA4 LINE L1 -7 6148 11 441 0 0 0 chr1 215414895 215414944 -66778720 + (TAA)n Simple_repeat Simple_repeat 3 51 0 316 314 44 48 chr1 215415137 215415366 -66778298 + MER90 LTR ERV1 386 613 -1 277 252 428 15 chr1 215415615 215415746 -66777918 + MER5A DNA MER1_type 4 188 -1 388 304 125 43 chr1 215415751 215416120 -66777544 + L2 LINE L2 2915 3313 0 2028 125 17 3 chr1 215416329 215416626 -66777038 - AluSq SINE Alu -12 301 1 341 238 24 36 chr1 215416630 215416714 -66776950 - MER5B DNA MER1_type -20 158 76 345 291 47 41 chr1 215416903 215417075 -66776589 - L1MEc LINE L1 -6221 175 3 435 290 44 30 chr1 215417091 215417318 -66776346 - L1MDa LINE L1 -3934 2606 2404 3693 58 0 4 chr1 215417321 215417789 -66775875 - L1PA7 LINE L1 0 6154 5689 847 249 89 7 chr1 215417867 215418305 -66775359 - MLT1D LTR MaLR 0 505 6 370 308 138 61 chr1 215418503 215418932 -66774732 - HAL1 LINE L1 -742 1765 1304 4231 175 37 12 chr1 215418960 215419196 -66774468 + L1MB5 LINE L1 4974 5203 -971 468 51 0 0 chr1 215419196 215419255 -66774409 + (TA)n Simple_repeat Simple_repeat 2 60 0 4231 175 37 12 chr1 215419255 215420175 -66773489 + L1MB5 LINE L1 5203 6166 -8 1617 224 209 117 chr1 215420204 215420456 -66773208 + L1MDa LINE L1 19 246 -6294 290 65 0 22 chr1 215420456 215420502 -66773162 + (CAA)n Simple_repeat Simple_repeat 1 45 0 1617 224 209 117 chr1 215420502 215421025 -66772639 + L1MDa LINE L1 246 720 -5820 2494 50 0 3 chr1 215421025 215421323 -66772341 + AluY SINE Alu 1 297 -14 1493 83 0 39 chr1 215421324 215421528 -66772136 + AluSx SINE Alu 1 196 -116 1617 224 209 117 chr1 215421528 215421601 -66772063 + L1MDa LINE L1 720 785 -5755 502 197 33 16 chr1 215421601 215421723 -66771941 + AluSx SINE Alu 186 309 0 1617 224 209 117 chr1 215421723 215421946 -66771718 + L1MDa LINE L1 785 986 -5554 252 100 0 0 chr1 215421946 215421986 -66771678 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1617 224 209 117 chr1 215421986 215422300 -66771364 + L1MDa LINE L1 986 1669 -4871 * 2893 206 60 24 chr1 215422296 215423182 -66770482 + L1MD1 LINE L1 5042 5959 -283 2296 84 20 3 chr1 215423182 215423481 -66770183 + AluY SINE Alu 1 304 -7 2893 206 60 24 chr1 215423481 215423573 -66770091 + L1MD1 LINE L1 5959 6046 -196 1626 168 5 73 chr1 215423577 215423890 -66769774 + MER2 DNA MER2_type 1 287 -58 1443 97 40 28 chr1 215423890 215424138 -66769526 - L1MA2 LINE L1 -8 6296 6046 1626 168 5 73 chr1 215424138 215424194 -66769470 + MER2 DNA MER2_type 287 345 0 306 264 0 11 chr1 215424197 215424288 -66769376 + L1MD2 LINE L1 6052 6141 -218 * 309 127 15 64 chr1 215424287 215424390 -66769274 + L1MC4a LINE L1 6194 7711 -75 271 238 50 0 chr1 215424400 215424480 -66769184 + L1MD3 LINE L1 7893 7976 -19 626 209 32 25 chr1 215425065 215425223 -66768441 + MER74B LTR ERVL 55 213 -409 315 284 167 6 chr1 215425323 215425485 -66768179 + L2 LINE L2 2918 3105 -208 2191 106 0 10 chr1 215425571 215425872 -66767792 + AluSx SINE Alu 1 298 -14 1527 164 18 11 chr1 215425875 215426161 -66767503 - MLT1B LTR MaLR -36 354 67 905 186 178 13 chr1 215426221 215426543 -66767121 + MER34C LTR ERV1 4 485 -246 357 238 20 10 chr1 215426698 215426799 -66766865 + MER34 LTR ERV1 441 542 0 2092 100 0 18 chr1 215427257 215427538 -66766126 + AluSc SINE Alu 21 296 -13 425 197 0 91 chr1 215428205 215428337 -66765327 + L1M4 LINE L1 16 135 -6407 3057 158 62 108 chr1 215428353 215428844 -66764820 + L1MB7 LINE L1 5273 5703 -481 2239 86 4 0 chr1 215428844 215429152 -66764512 + AluSc SINE Alu 1 309 0 3057 158 62 108 chr1 215429152 215429604 -66764060 + L1MB7 LINE L1 5703 6174 -10 728 258 30 42 chr1 215429621 215429885 -66763779 + MER46C DNA MER2_type 68 328 -10 2460 93 0 0 chr1 215430145 215430504 -66763160 - AluSx SINE Alu 0 359 1 960 183 21 16 chr1 215431032 215431218 -66762446 + MER5A DNA MER1_type 3 189 0 269 293 10 20 chr1 215431252 215431351 -66762313 - MER103 DNA DNA -18 148 51 2721 16 0 13 chr1 215431789 215432102 -66761562 - AluYb8 SINE Alu -9 309 1 212 271 43 43 chr1 215432638 215432708 -66760956 - L2 LINE L2 -2 3311 3242 2844 209 90 28 chr1 215432733 215432897 -66760767 + L1MC4a LINE L1 6890 7042 -766 2204 127 0 7 chr1 215432897 215433204 -66760460 + AluSg SINE Alu 1 305 -5 2844 209 90 28 chr1 215433204 215433894 -66759770 + L1MC4a LINE L1 7042 7797 -11 201 74 0 0 chr1 215434434 215434461 -66759203 + (TG)n Simple_repeat Simple_repeat 1 27 0 189 370 63 48 chr1 215434746 215434935 -66758729 - L2 LINE L2 -360 2954 2763 450 261 56 35 chr1 215435574 215435918 -66757746 - MLT1J2 LTR MaLR 0 450 29 1508 197 14 40 chr1 215436110 215436481 -66757183 - MLT1A1 LTR MaLR 0 365 5 185 309 0 0 chr1 215437134 215437176 -66756488 - L3 LINE CR1 -294 1283 1242 421 314 189 6 chr1 215437241 215437410 -66756254 - MIR SINE MIR 0 262 63 214 243 14 29 chr1 215439830 215439900 -66753764 + CT-rich Low_complexity Low_complexity 4 72 0 2305 69 20 3 chr1 215440483 215440786 -66752878 + AluY SINE Alu 1 308 -3 268 216 40 40 chr1 215441039 215441113 -66752551 - L2 LINE L2 -1 3312 3239 200 333 9 79 chr1 215441222 215441336 -66752328 + L2 LINE L2 3192 3297 -16 536 282 27 80 chr1 215442591 215442776 -66750888 + MIR SINE MIR 15 183 -79 1943 98 84 0 chr1 215442776 215443051 -66750613 + AluSc SINE Alu 1 298 -11 536 282 27 80 chr1 215443051 215443127 -66750537 + MIR SINE MIR 183 262 0 315 326 35 28 chr1 215443559 215443703 -66749961 - MIR3 SINE MIR -61 147 3 479 215 37 30 chr1 215443984 215444119 -66749545 - L1M4 LINE L1 -1834 4312 4177 308 350 9 16 chr1 215444418 215444618 -66749046 - MLT1J LTR MaLR -249 262 27 1165 129 0 0 chr1 215445459 215445622 -66748042 + AluSq SINE Alu 137 299 -14 268 264 50 62 chr1 215446581 215446769 -66746895 + MIR SINE MIR 7 190 -68 2416 96 0 3 chr1 215446837 215447150 -66746514 - AluSq SINE Alu 0 313 2 195 42 0 0 chr1 215449542 215449566 -66744098 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1767 172 3 7 chr1 215449963 215450271 -66743393 + AluSx SINE Alu 1 307 0 2100 100 14 0 chr1 215450349 215450629 -66743035 - AluSx SINE Alu -6 306 23 181 116 23 23 chr1 215450735 215450778 -66742886 + (TA)n Simple_repeat Simple_repeat 1 43 0 236 282 0 0 chr1 215451361 215451432 -66742232 + MER94 DNA DNA 1 71 -63 335 289 160 0 chr1 215451471 215451627 -66742037 + MIR SINE MIR 70 250 -12 227 292 65 0 chr1 215454994 215455122 -66738542 - MIR SINE MIR -7 201 62 441 323 39 13 chr1 215455610 215455765 -66737899 - MIR3 SINE MIR -29 179 21 231 114 0 0 chr1 215456684 215456719 -66736945 + (TCC)n Simple_repeat Simple_repeat 2 36 0 318 217 84 0 chr1 215457166 215457249 -66736415 - MIR SINE MIR -42 220 131 371 271 78 31 chr1 215457989 215458118 -66735546 - MIR SINE MIR -70 192 58 728 287 164 74 chr1 215458548 215459396 -66734268 + L1M2 LINE L1 529 1452 -5397 371 309 92 114 chr1 215459405 215460126 -66733538 + L1M2 LINE L1 654 1358 -5491 34 0 0 0 chr1 215462015 215462049 -66731615 + AT_rich Low_complexity Low_complexity 1 34 0 222 306 92 20 chr1 215462253 215462351 -66731313 - MIR3 SINE MIR -23 185 81 1702 147 3 62 chr1 215462359 215462665 -66730999 - AluJb SINE Alu -24 288 1 646 109 33 0 chr1 215463701 215463793 -66729871 - U6 snRNA snRNA -12 95 1 22 0 0 0 chr1 215463866 215463888 -66729776 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 215465129 215465154 -66728510 + AT_rich Low_complexity Low_complexity 1 25 0 1467 152 19 16 chr1 215466780 215467036 -66726628 + AluJb SINE Alu 32 288 -24 183 152 0 0 chr1 215467071 215467117 -66726547 + A-rich Low_complexity Low_complexity 1 46 0 305 290 20 30 chr1 215467144 215467244 -66726420 - L2 LINE L2 0 3313 3215 1291 272 65 25 chr1 215467283 215467829 -66725835 + L2 LINE L2 2474 3054 -259 818 274 35 16 chr1 215468493 215468748 -66724916 + MIR SINE MIR 3 262 0 1386 82 0 0 chr1 215470036 215470218 -66723446 + AluSg/x SINE Alu 124 305 -4 1607 158 33 30 chr1 215470850 215471153 -66722511 - AluJo SINE Alu -8 304 1 184 415 54 23 chr1 215471873 215472003 -66721661 - L2 LINE L2 0 3272 3139 637 260 82 10 chr1 215473284 215473480 -66720184 + MIR SINE MIR 4 213 -49 728 285 59 43 chr1 215473710 215473963 -66719701 - MIR SINE MIR -5 257 1 279 265 54 82 chr1 215475916 215476063 -66717601 + MIR SINE MIR 72 214 -48 214 133 0 67 chr1 215476074 215476181 -66717483 + (TAAAA)n Simple_repeat Simple_repeat 1 99 0 283 274 152 56 chr1 215476385 215476582 -66717082 + MIR SINE MIR 1 216 -46 189 0 0 0 chr1 215476642 215476663 -66717001 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 210 143 0 0 chr1 215476669 215476704 -66716960 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr1 215477536 215477557 -66716107 + AT_rich Low_complexity Low_complexity 1 21 0 224 160 0 96 chr1 215477767 215477861 -66715803 + A-rich Low_complexity Low_complexity 4 88 0 202 324 0 0 chr1 215477969 215478043 -66715621 + (CAT)n Simple_repeat Simple_repeat 3 76 0 198 136 0 0 chr1 215478056 215478100 -66715564 + (CAT)n Simple_repeat Simple_repeat 3 46 0 22 56 0 0 chr1 215478523 215478559 -66715105 + AT_rich Low_complexity Low_complexity 1 36 0 870 65 38 25 chr1 215478855 215479209 -66714455 + (TA)n Simple_repeat Simple_repeat 1 359 0 209 195 0 0 chr1 215479335 215479376 -66714288 + (CAT)n Simple_repeat Simple_repeat 1 41 0 1842 132 10 10 chr1 215479653 215479948 -66713716 - AluSq SINE Alu -18 295 1 982 127 218 20 chr1 215480134 215480386 -66713278 - MER33 DNA MER1_type 0 324 23 1494 156 91 73 chr1 215481208 215481548 -66712116 - MER46B DNA MER2_type -15 221 1 369 263 246 22 chr1 215481777 215481956 -66711708 + MIR SINE MIR 37 255 -7 3512 138 48 43 chr1 215481976 215482644 -66711020 + LTR51 LTR ERV1 1 671 0 275 328 51 14 chr1 215482720 215482915 -66710749 - MIR3 SINE MIR -19 243 1 33 0 0 0 chr1 215483564 215483597 -66710067 + AT_rich Low_complexity Low_complexity 1 33 0 7293 90 19 11 chr1 215485028 215486082 -66707582 - L1P LINE L1 -5074 1072 11 306 0 0 0 chr1 215486383 215486417 -66707247 + (TAA)n Simple_repeat Simple_repeat 3 36 0 248 264 90 45 chr1 215491243 215491421 -66702243 + L1ME4a LINE L1 5733 5918 -203 275 298 57 32 chr1 215492367 215492491 -66701173 - MIR SINE MIR -90 172 46 809 199 160 6 chr1 215492535 215492716 -66700948 - MER58C DNA MER1_type -6 209 1 773 162 14 0 chr1 215493098 215493240 -66700424 + BC200 scRNA scRNA 1 144 -56 263 326 38 30 chr1 215494278 215494410 -66699254 - MIR SINE MIR -129 133 1 1978 151 3 0 chr1 215494489 215494787 -66698877 - AluJo SINE Alu -13 299 1 22 56 0 0 chr1 215494875 215494911 -66698753 + AT_rich Low_complexity Low_complexity 1 36 0 309 248 95 29 chr1 215495622 215495727 -66697937 - HAL1b LINE L1 -34 1314 1203 2428 53 0 13 chr1 215496029 215496329 -66697335 - AluY SINE Alu -15 296 1 22 0 0 0 chr1 215496330 215496352 -66697312 + AT_rich Low_complexity Low_complexity 1 22 0 785 270 142 9 chr1 215497010 215497236 -66696428 - MIR SINE MIR -4 258 3 1004 148 0 28 chr1 215498207 215498383 -66695281 + AluSg/x SINE Alu 132 302 -8 22 35 0 0 chr1 215501695 215501724 -66691940 + AT_rich Low_complexity Low_complexity 1 29 0 4095 79 29 6 chr1 215501829 215502835 -66690829 + MER11A LTR ERVK 1 1266 0 1619 133 117 39 chr1 215503054 215503363 -66690301 - MER47A DNA MER2_type -1 365 33 2144 85 6 28 chr1 215503427 215503745 -66689919 + AluY SINE Alu 1 311 0 2278 256 88 12 chr1 215504526 215505265 -66688399 + L1MEc LINE L1 48 842 -5554 25 0 0 0 chr1 215505859 215505884 -66687780 + AT_rich Low_complexity Low_complexity 1 25 0 2310 85 3 3 chr1 215507143 215507450 -66686214 + AluY SINE Alu 1 307 -4 1505 96 65 4 chr1 215507984 215508213 -66685451 + MER75B DNA T2_type 1 243 0 24 53 0 0 chr1 215508334 215508372 -66685292 + AT_rich Low_complexity Low_complexity 1 38 0 2009 143 0 7 chr1 215508950 215509257 -66684407 - AluSx SINE Alu -7 305 1 269 236 14 0 chr1 215510155 215510227 -66683437 + HsTC2 DNA Tc2 1826 1898 0 231 217 43 58 chr1 215511061 215511104 -66682560 + L2 LINE L2 3196 3239 -33 1503 186 10 27 chr1 215511104 215511399 -66682265 - AluJo SINE Alu -22 290 1 231 217 43 58 chr1 215511399 215511424 -66682240 + L2 LINE L2 3239 3263 -9 28 71 0 0 chr1 215516076 215516132 -66677532 + AT_rich Low_complexity Low_complexity 1 56 0 13848 146 43 45 chr1 215517605 215519156 -66674508 + Tigger2 DNA MER2_type 1 1544 -1174 2079 119 7 0 chr1 215519156 215519449 -66674215 - AluSx SINE Alu -17 295 1 13848 146 43 45 chr1 215519449 215520622 -66673042 + Tigger2 DNA MER2_type 1544 2718 0 21 0 0 0 chr1 215520813 215520834 -66672830 + AT_rich Low_complexity Low_complexity 1 21 0 2254 99 0 3 chr1 215521115 215521417 -66672247 - AluSg1 SINE Alu -6 303 3 1632 192 10 3 chr1 215522384 215522676 -66670988 + AluJb SINE Alu 1 294 -18 4581 214 37 11 chr1 215522761 215523902 -66669762 - L1 LINE L1 -934 5212 4043 310 321 102 51 chr1 215524090 215524405 -66669259 - L1M4 LINE L1 -1310 4836 4506 198 325 52 39 chr1 215524758 215524835 -66668829 + L2 LINE L2 3234 3311 -2 25 0 0 0 chr1 215525674 215525699 -66667965 + AT_rich Low_complexity Low_complexity 1 25 0 1856 146 34 0 chr1 215526324 215526618 -66667046 + AluSx SINE Alu 1 304 -8 617 100 0 0 chr1 215526682 215526772 -66666892 + 5S rRNA rRNA 1 90 -31 25 0 0 0 chr1 215526932 215526957 -66666707 + AT_rich Low_complexity Low_complexity 1 25 0 205 345 0 35 chr1 215527186 215527244 -66666420 - MIR SINE MIR -131 77 22 22 0 0 0 chr1 215527720 215527742 -66665922 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr1 215530048 215530077 -66663587 + (TG)n Simple_repeat Simple_repeat 1 29 0 315 283 71 26 chr1 215530864 215530977 -66662687 - MIR3 SINE MIR -6 202 85 1401 151 129 50 chr1 215531048 215531366 -66662298 + MER2 DNA MER2_type 1 343 -1 2421 77 0 0 chr1 215531818 215532118 -66661546 + AluY SINE Alu 1 300 -11 909 211 62 47 chr1 215532676 215532932 -66660732 + MIR SINE MIR 2 261 -1 270 304 80 48 chr1 215532956 215533081 -66660583 + L2 LINE L2 3144 3272 0 2402 75 3 0 chr1 215533216 215533522 -66660142 + AluSq SINE Alu 1 307 -6 432 286 8 8 chr1 215533564 215533683 -66659981 + MER117 DNA MER1_type 1 119 -78 2460 27 7 7 chr1 215535383 215535681 -66657983 - AluY SINE Alu -13 298 1 1518 141 13 73 chr1 215536182 215536495 -66657169 + AluJo SINE Alu 5 298 -14 184 225 113 84 chr1 215536598 215536669 -66656995 - L2 LINE L2 -1867 1447 1375 213 335 66 7 chr1 215537258 215537410 -66656254 - L2 LINE L2 -787 2527 2367 740 111 0 0 chr1 215537504 215537612 -66656052 + L1PA8A LINE L1 5985 6092 -39 204 135 0 0 chr1 215537726 215537763 -66655901 + (TA)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr1 215537803 215537827 -66655837 + AT_rich Low_complexity Low_complexity 1 24 0 2127 95 0 3 chr1 215537830 215538113 -66655551 + AluSx SINE Alu 21 302 -10 1701 176 99 10 chr1 215538132 215538525 -66655139 - MSTB1 LTR MaLR 0 432 5 297 0 0 0 chr1 215538627 215538660 -66655004 + (CA)n Simple_repeat Simple_repeat 2 34 0 426 291 55 14 chr1 215539099 215539319 -66654345 + L1ME LINE L1 5578 5806 -315 201 264 136 58 chr1 215539514 215539669 -66653995 - L2 LINE L2 -212 3060 2894 22 80 0 0 chr1 215540308 215540358 -66653306 + AT_rich Low_complexity Low_complexity 1 50 0 303 286 16 0 chr1 215540399 215540462 -66653202 - MER91 DNA MER1_type 0 190 127 749 175 0 0 chr1 215542262 215542382 -66651282 + FLAM_A SINE Alu 10 129 -13 204 217 0 0 chr1 215543459 215543505 -66650159 + (TA)n Simple_repeat Simple_repeat 1 46 0 1463 188 3 58 chr1 215543848 215544157 -66649507 - AluJb SINE Alu -20 292 1 212 313 0 0 chr1 215545294 215545374 -66648290 + T-rich Low_complexity Low_complexity 1 80 0 4238 90 2 3 chr1 215545996 215546584 -66647080 + L1PA13 LINE L1 5304 5890 -273 1295 120 0 6 chr1 215546584 215546767 -66646897 + AluSq SINE Alu 1 182 -131 2082 125 0 10 chr1 215546770 215547083 -66646581 + AluSx SINE Alu 1 310 -2 1613 94 90 0 chr1 215547083 215547338 -66646326 + L1PA13 LINE L1 5881 6158 -5 584 294 102 5 chr1 215547579 215547776 -66645888 - MER58A DNA MER1_type 0 224 9 21 57 0 0 chr1 215548057 215548092 -66645572 + AT_rich Low_complexity Low_complexity 1 35 0 232 271 0 0 chr1 215548290 215548338 -66645326 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 2378 63 0 0 chr1 215549148 215549434 -66644230 - AluY SINE Alu -25 286 1 23 33 0 0 chr1 215549442 215549472 -66644192 + AT_rich Low_complexity Low_complexity 1 30 0 1857 163 3 3 chr1 215550368 215550668 -66642996 + AluJo SINE Alu 1 300 -12 423 0 0 0 chr1 215550762 215550809 -66642855 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 280 228 43 0 chr1 215550809 215550901 -66642763 + (TA)n Simple_repeat Simple_repeat 1 96 0 1281 161 30 4 chr1 215551508 215551738 -66641926 - MER46A DNA MER2_type 0 236 1 1756 169 0 13 chr1 215553256 215553558 -66640106 - AluJb SINE Alu -14 298 1 2638 35 3 0 chr1 215554029 215554339 -66639325 - AluY SINE Alu 0 311 1 1692 77 0 0 chr1 215554421 215554629 -66639035 - AluSq SINE Alu -105 208 1 181 333 122 11 chr1 215555409 215555499 -66638165 + MIR3 SINE MIR 9 108 -100 437 173 21 7 chr1 215555512 215555664 -66638000 + CT-rich Low_complexity Low_complexity 1 154 0 2151 170 46 2 chr1 215555665 215556119 -66637545 - L1 LINE L1 -2247 3899 3426 211 139 28 0 chr1 215556121 215556157 -66637507 + CT-rich Low_complexity Low_complexity 4 40 0 713 141 0 8 chr1 215556237 215556365 -66637299 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 294 172 11 35 chr1 215556357 215556444 -66637220 + CT-rich Low_complexity Low_complexity 5 89 0 * 1203 150 0 67 chr1 215556447 215556687 -66636977 - AluJo SINE Alu -3 309 86 567 240 24 0 chr1 215556696 215556821 -66636843 - AluJo SINE Alu -56 256 129 477 227 118 8 chr1 215556824 215556943 -66636721 - AluJo SINE Alu -170 132 1 295 325 86 0 chr1 215556946 215557063 -66636601 + MIR SINE MIR 124 250 -12 29 47 0 0 chr1 215557272 215557315 -66636349 + AT_rich Low_complexity Low_complexity 1 43 0 697 128 16 32 chr1 215557315 215557440 -66636224 - L1MA1 LINE L1 0 6302 6180 23 0 0 0 chr1 215558190 215558213 -66635451 + AT_rich Low_complexity Low_complexity 1 23 0 2300 95 3 0 chr1 215559607 215559911 -66633753 - AluSx SINE Alu -5 307 3 509 236 286 23 chr1 215561212 215561481 -66632183 + MLT1H1 LTR MaLR 204 555 0 353 299 82 0 chr1 215561666 215561800 -66631864 + MLT1H1-int LTR MaLR 400 544 -827 304 308 59 61 chr1 215562311 215562610 -66631054 + MLT1H1-int LTR MaLR 1028 1697 -38 843 259 133 81 chr1 215562637 215563194 -66630470 + MLT1H1 LTR MaLR 4 549 -6 674 299 181 13 chr1 215563382 215563923 -66629741 - L1ME3A LINE L1 -221 5949 5318 2332 106 0 0 chr1 215563951 215564262 -66629402 + AluSx SINE Alu 1 311 -1 477 303 108 13 chr1 215564389 215564733 -66628931 - L1ME3A LINE L1 -2438 3708 3333 236 159 91 0 chr1 215564944 215564988 -66628676 - L1ME3A LINE L1 -3123 3023 2976 325 280 136 37 chr1 215565313 215565688 -66627976 - L1ME3A LINE L1 -3595 2551 2140 2040 115 17 3 chr1 215565824 215566119 -66627545 - AluSx SINE Alu -11 301 3 315 308 17 17 chr1 215567653 215567773 -66625891 + L2 LINE L2 3178 3297 -16 344 300 120 53 chr1 215567861 215568144 -66625520 - L3 LINE CR1 -199 1378 1077 934 271 14 0 chr1 215568321 215568528 -66625136 - MIR SINE MIR -30 232 23 469 243 40 0 chr1 215568754 215568927 -66624737 + (TA)n Simple_repeat Simple_repeat 1 180 0 30 59 0 0 chr1 215568954 215569005 -66624659 + AT_rich Low_complexity Low_complexity 1 51 0 493 158 0 19 chr1 215569333 215569480 -66624184 + AluJb SINE Alu 82 299 -13 336 286 0 57 chr1 215569635 215569740 -66623924 + L2 LINE L2 3215 3313 0 2126 117 0 0 chr1 215569814 215570114 -66623550 - AluSg SINE Alu -10 300 1 2310 81 3 0 chr1 215571004 215571299 -66622365 + AluSp SINE Alu 1 296 -17 1440 162 18 0 chr1 215571341 215571570 -66622094 + MER46A DNA MER2_type 4 236 0 27 29 0 0 chr1 215571794 215571828 -66621836 + AT_rich Low_complexity Low_complexity 1 34 0 192 40 0 0 chr1 215572319 215572344 -66621320 + (TGAG)n Simple_repeat Simple_repeat 3 27 0 24 53 0 0 chr1 215572496 215572534 -66621130 + AT_rich Low_complexity Low_complexity 1 38 0 235 294 84 17 chr1 215572555 215572674 -66620990 - L2 LINE L2 -153 3119 2993 211 200 0 0 chr1 215572910 215572945 -66620719 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1179 142 123 9 chr1 215573382 215573593 -66620071 + MER46A DNA MER2_type 2 236 0 23 54 0 0 chr1 215574605 215574642 -66619022 + AT_rich Low_complexity Low_complexity 1 37 0 2293 78 7 3 chr1 215574795 215575090 -66618574 - AluY SINE Alu -15 296 1 303 150 250 12 chr1 215576275 215576355 -66617309 - MER58C DNA MER1_type -3 212 114 24 53 0 0 chr1 215576456 215576494 -66617170 + AT_rich Low_complexity Low_complexity 1 38 0 1256 98 5 125 chr1 215576526 215576659 -66617005 + AluSq SINE Alu 3 100 -213 1777 144 0 20 chr1 215576659 215576958 -66616706 + AluSx SINE Alu 1 293 -19 1256 98 5 125 chr1 215576958 215577048 -66616616 + AluSq SINE Alu 100 199 -114 916 157 0 0 chr1 215577150 215577297 -66616367 + AluSg/x SINE Alu 157 303 -9 2083 107 3 3 chr1 215577393 215577683 -66615981 - AluSx SINE Alu -22 290 1 22 35 0 0 chr1 215578444 215578473 -66615191 + AT_rich Low_complexity Low_complexity 1 29 0 1286 120 5 14 chr1 215578697 215578905 -66614759 - AluY SINE Alu 0 311 106 1436 204 13 35 chr1 215579851 215580165 -66613499 + AluJo SINE Alu 6 312 0 28 0 0 0 chr1 215580403 215580431 -66613233 + AT_rich Low_complexity Low_complexity 1 28 0 584 269 95 52 chr1 215580989 215581422 -66612242 + L1ME3A LINE L1 895 1252 -4867 1860 131 17 10 chr1 215582004 215582302 -66611362 + AluSx SINE Alu 1 300 -12 309 277 141 45 chr1 215582438 215582814 -66610850 + L1ME3A LINE L1 2123 2534 -3595 236 159 91 0 chr1 215583139 215583183 -66610481 + L1ME3A LINE L1 2959 3006 -3123 477 303 108 13 chr1 215583394 215583738 -66609926 + L1ME3A LINE L1 3316 3691 -2438 2340 106 0 0 chr1 215583865 215584177 -66609487 - AluSx SINE Alu 0 312 1 674 299 181 13 chr1 215584205 215584746 -66608918 + L1ME3A LINE L1 5301 5932 -221 843 259 133 81 chr1 215584934 215585491 -66608173 - MLT1H1 LTR MaLR -6 588 4 304 308 59 61 chr1 215585518 215585817 -66607847 - MLT1H1-int LTR MaLR -38 1697 1028 353 299 82 0 chr1 215586328 215586462 -66607202 - MLT1H1-int LTR MaLR -827 544 400 809 287 157 17 chr1 215586647 215587107 -66606557 - MLT1H1 LTR MaLR 0 555 32 14037 128 40 22 chr1 215587207 215589384 -66604280 - Tigger1 DNA MER2_type -4 2414 191 1403 162 31 112 chr1 215589384 215589705 -66603959 + AluJb SINE Alu 1 295 -17 14037 128 40 22 chr1 215589705 215589900 -66603764 - Tigger1 DNA MER2_type -2227 191 1 360 381 161 22 chr1 215591469 215592009 -66601655 - L2 LINE L2 -1738 1576 962 331 391 26 0 chr1 215592094 215592245 -66601419 - L2 LINE L2 -2869 445 291 1254 281 110 52 chr1 215592630 215593208 -66600456 - L1M4 LINE L1 -2318 3828 3285 2310 101 0 0 chr1 215593208 215593506 -66600158 - AluSg SINE Alu -12 298 1 1254 281 110 52 chr1 215593506 215593994 -66599670 - L1M4 LINE L1 -2861 3285 2827 2155 114 7 0 chr1 215593994 215594301 -66599363 - AluSx SINE Alu -3 309 1 1254 281 110 52 chr1 215594301 215594740 -66598924 - L1M4 LINE L1 -3319 2827 2234 254 328 70 79 chr1 215595869 215596110 -66597554 + MIR SINE MIR 20 258 -4 191 36 36 0 chr1 215596406 215596434 -66597230 + (TG)n Simple_repeat Simple_repeat 2 30 0 230 294 0 15 chr1 215596874 215596942 -66596722 - L2 LINE L2 -660 2654 2588 1084 215 9 5 chr1 215596999 215597213 -66596451 + MER20 DNA MER1_type 2 216 -3 305 298 57 8 chr1 215597320 215597444 -66596220 - L2 LINE L2 -1249 2065 1936 1394 280 100 11 chr1 215597474 215597884 -66595780 + LTR33 LTR ERVL 1 461 -60 3750 50 0 4 chr1 215597884 215598361 -66595303 - L1PA4 LINE L1 -3 6152 5678 1394 280 100 11 chr1 215598361 215598428 -66595236 + LTR33 LTR ERVL 461 521 0 2142 107 23 10 chr1 215599335 215599643 -66594021 + AluSx SINE Alu 1 312 0 201 382 52 37 chr1 215599888 215600024 -66593640 + L2 LINE L2 3134 3271 -1 690 235 154 14 chr1 215600436 215600657 -66593007 - MIR SINE MIR 0 262 11 984 332 146 26 chr1 215602120 215602351 -66591313 - L2 LINE L2 -1020 2294 2092 1997 130 37 0 chr1 215602351 215602650 -66591014 + AluSx SINE Alu 1 310 -2 984 332 146 26 chr1 215602650 215603370 -66590294 - L2 LINE L2 -1222 2092 1229 339 254 154 8 chr1 215603631 215603761 -66589903 + MIR SINE MIR 102 250 -12 373 346 118 20 chr1 215604964 215605218 -66588446 + L2 LINE L2 2896 3174 -139 802 244 25 0 chr1 215605286 215605446 -66588218 + MER5A DNA MER1_type 18 181 -8 372 259 170 7 chr1 215605702 215605837 -66587827 - MIR SINE MIR -6 256 100 1225 154 117 0 chr1 215605957 215606171 -66587493 + AluJb SINE Alu 5 243 -69 2152 126 0 0 chr1 215607599 215607892 -66585772 - AluSx SINE Alu -19 293 1 30 45 0 0 chr1 215608131 215608175 -66585489 + AT_rich Low_complexity Low_complexity 1 44 0 1013 266 71 23 chr1 215608326 215608720 -66584944 - L1MC4a LINE L1 -1878 5930 5518 276 238 22 62 chr1 215608773 215608985 -66584679 - L1MC4a LINE L1 -802 5344 5160 257 231 0 15 chr1 215608985 215609050 -66584614 + CT-rich Low_complexity Low_complexity 3 66 0 192 40 0 0 chr1 215609087 215609112 -66584552 + (TTTTTG)n Simple_repeat Simple_repeat 6 30 0 31 0 0 0 chr1 215609794 215609825 -66583839 + AT_rich Low_complexity Low_complexity 1 31 0 222 235 0 0 chr1 215609971 215610022 -66583642 + (TA)n Simple_repeat Simple_repeat 2 52 0 869 296 36 4 chr1 215610332 215610579 -66583085 - MIR SINE MIR -2 260 6 1294 174 40 56 chr1 215610772 215611076 -66582588 - AluJo SINE Alu -13 299 1 229 321 24 0 chr1 215612295 215612379 -66581285 - L2 LINE L2 0 3313 3228 2004 130 3 3 chr1 215612746 215613045 -66580619 - AluSx SINE Alu -13 299 1 374 273 232 16 chr1 215614251 215614445 -66579219 - MIR SINE MIR -21 241 6 2186 93 13 22 chr1 215614667 215614980 -66578684 - AluSg SINE Alu 0 310 1 1286 236 91 6 chr1 215615562 215615914 -66577750 - MLT1B LTR MaLR -7 383 2 2409 51 0 35 chr1 215616185 215616500 -66577164 + AluY SINE Alu 1 304 -7 306 0 0 0 chr1 215616500 215616534 -66577130 + (TA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr1 215617144 215617172 -66576492 + AT_rich Low_complexity Low_complexity 1 28 0 14792 57 2 1 chr1 215617490 215620170 -66573494 + L1PA5 LINE L1 3475 6154 0 9762 194 24 38 chr1 215620193 215621240 -66572424 + L1PA13 LINE L1 2350 3411 -2735 2184 90 0 4 chr1 215621240 215621518 -66572146 - AluY SINE Alu -24 287 11 9762 194 24 38 chr1 215621518 215621673 -66571991 + L1PA13 LINE L1 3411 3567 -2579 207 0 0 0 chr1 215621673 215621696 -66571968 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 9762 194 24 38 chr1 215621696 215622837 -66570827 + L1PA13 LINE L1 3567 4660 -1486 6822 147 75 20 chr1 215622835 215623200 -66570464 - L1PBa LINE L1 -3604 3258 2914 * 1977 101 38 0 chr1 215623200 215623467 -66570197 - AluY SINE Alu -12 299 23 6822 147 75 20 chr1 215623467 215624571 -66569093 - L1PBa LINE L1 -3948 2914 1709 * 10520 180 23 5 chr1 215624567 215625978 -66567686 + L1PB1 LINE L1 2983 4366 -1785 1822 31 0 9 chr1 215625978 215626188 -66567476 + L1PA4 LINE L1 5932 6144 -11 225 0 0 0 chr1 215626188 215626213 -66567451 + (CA)n Simple_repeat Simple_repeat 2 26 0 1822 31 0 9 chr1 215626213 215626225 -66567439 + L1PA4 LINE L1 6144 6155 0 10520 180 23 5 chr1 215626225 215627937 -66565727 + L1PB1 LINE L1 4366 6151 0 5302 141 14 3 chr1 215627950 215629438 -66564226 + L1PA13 LINE L1 4644 6144 -19 375 205 26 8 chr1 215629438 215629555 -66564109 - L1 LINE L1 -2928 3218 3100 2029 90 50 0 chr1 215629557 215629834 -66563830 - AluY SINE Alu -20 291 1 195 381 76 8 chr1 215629860 215629978 -66563686 + L2 LINE L2 2918 3043 -229 213 320 0 0 chr1 215629983 215630033 -66563631 + L2 LINE L2 3207 3256 -16 27708 94 6 9 chr1 215630245 215631245 -66562419 + L1PA7 LINE L1 1321 2323 -3831 207 0 0 0 chr1 215631245 215631268 -66562396 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 27708 94 6 9 chr1 215631268 215635106 -66558558 + L1PA7 LINE L1 2323 6143 -11 2057 127 0 0 chr1 215635849 215636156 -66557508 + AluSx SINE Alu 1 307 -5 194 313 109 0 chr1 215636193 215636257 -66557407 - MER5A DNA MER1_type -66 123 53 1164 26 98 0 chr1 215636257 215636410 -66557254 + SVA Other Other 143 310 -1076 244 269 0 0 chr1 215636635 215636687 -66556977 + MIR3 SINE MIR 151 202 -6 378 107 0 0 chr1 215636707 215636763 -66556901 + (TA)n Simple_repeat Simple_repeat 2 57 0 2707 173 65 8 chr1 215637132 215637652 -66556012 + MER44D DNA MER2_type 1 605 0 23 0 0 0 chr1 215637993 215638016 -66555648 + AT_rich Low_complexity Low_complexity 1 23 0 473 299 45 26 chr1 215638332 215638486 -66555178 - L2 LINE L2 0 3272 3116 467 317 54 9 chr1 215638534 215638758 -66554906 - HAL1 LINE L1 -2262 245 12 23 68 0 0 chr1 215638993 215639037 -66554627 + AT_rich Low_complexity Low_complexity 1 44 0 377 271 139 13 chr1 215640024 215640175 -66553489 - MIR SINE MIR -2 260 91 205 237 32 86 chr1 215640178 215640271 -66553393 - L2 LINE L2 0 3313 3226 700 174 0 0 chr1 215641810 215641925 -66551739 - FLAM_A SINE Alu -15 127 13 1911 158 78 11 chr1 215642211 215642571 -66551093 - MSTB LTR MaLR -2 424 41 2039 157 0 0 chr1 215642571 215642916 -66550748 - AluSx SINE Alu 0 345 1 2357 87 0 0 chr1 215643540 215643851 -66549813 + AluY SINE Alu 1 311 0 2027 162 81 0 chr1 215644133 215644540 -66549124 + L1MA4 LINE L1 5861 6300 0 4540 178 44 77 chr1 215644545 215645760 -66547904 + L1M3 LINE L1 4259 5482 -701 313 264 57 14 chr1 215645768 215645908 -66547756 - L1MCa LINE L1 -3908 2520 2375 231 318 15 0 chr1 215646097 215646163 -66547501 - L1ME3A LINE L1 -150 6020 5954 7140 216 64 73 chr1 215646202 215648493 -66545171 + L1MC4a LINE L1 5357 7627 -181 529 211 0 53 chr1 215648493 215648607 -66545057 + L1MC4 LINE L1 7811 7918 -124 475 242 8 0 chr1 215648625 215648753 -66544911 - L1MC4 LINE L1 0 8042 7914 366 294 147 25 chr1 215648868 215649031 -66544633 + MIR SINE MIR 11 193 -69 21 0 0 0 chr1 215649384 215649405 -66544259 + AT_rich Low_complexity Low_complexity 1 21 0 1607 175 0 4 chr1 215649933 215650202 -66543462 - AluJb SINE Alu -44 268 1 180 219 191 86 chr1 215650762 215650867 -66542797 + MIR SINE MIR 91 206 -56 559 250 16 0 chr1 215650888 215651016 -66542648 - L1MCa LINE L1 -6276 150 21 1460 235 79 42 chr1 215651137 215651618 -66542046 - MLT1D LTR MaLR -4 501 3 3559 131 37 14 chr1 215651887 215652477 -66541187 + MER6A DNA MER2_type 2 605 0 702 275 44 48 chr1 215653826 215654077 -66539587 + MIR SINE MIR 13 262 0 23 0 0 0 chr1 215654285 215654308 -66539356 + AT_rich Low_complexity Low_complexity 1 23 0 339 44 0 0 chr1 215654459 215654504 -66539160 + MADE1 DNA Mariner 36 80 0 344 299 0 0 chr1 215654507 215654604 -66539060 - MIR SINE MIR -18 244 148 463 300 82 27 chr1 215654777 215655011 -66538653 + MIR SINE MIR 10 262 0 195 42 0 0 chr1 215655046 215655070 -66538594 + (CA)n Simple_repeat Simple_repeat 2 25 0 378 344 92 34 chr1 215655512 215655948 -66537716 - L2 LINE L2 -599 2715 2255 418 281 81 19 chr1 215656660 215656820 -66536844 - MIR SINE MIR -59 203 34 28 0 0 0 chr1 215659029 215659057 -66534607 + AT_rich Low_complexity Low_complexity 1 28 0 2331 84 7 0 chr1 215659057 215659365 -66534299 - AluSp SINE Alu -3 310 1 542 241 92 11 chr1 215660221 215660395 -66533269 + MIR SINE MIR 74 261 -1 1590 140 0 157 chr1 215660398 215660805 -66532859 + MER7A DNA MER2_type 3 343 -3 2047 125 0 0 chr1 215661058 215661367 -66532297 - AluSx SINE Alu 0 309 1 424 183 49 0 chr1 215661557 215661639 -66532025 - L1MCa LINE L1 -6320 106 21 491 253 76 13 chr1 215662539 215662697 -66530967 + L3 LINE CR1 1218 1385 -192 1238 123 23 27 chr1 215663740 215663960 -66529704 - MER20 DNA MER1_type 0 219 1 210 250 0 158 chr1 215664805 215664881 -66528783 - L2 LINE L2 -4 3309 3246 304 273 234 39 chr1 215665039 215665244 -66528420 - L1MC/D LINE L1 -801 5558 5314 471 333 63 54 chr1 215665402 215665849 -66527815 + L2 LINE L2 1880 2330 -984 240 143 0 0 chr1 215666066 215666101 -66527563 + MIR SINE MIR 217 251 -11 224 265 103 77 chr1 215666155 215666272 -66527392 + L3 LINE CR1 1054 1173 -404 286 250 221 19 chr1 215666279 215666487 -66527177 - L1ME4a LINE L1 -87 6034 5785 303 191 0 0 chr1 215666577 215666645 -66527019 + (TA)n Simple_repeat Simple_repeat 2 69 0 202 200 0 0 chr1 215666687 215666722 -66526942 + (CATA)n Simple_repeat Simple_repeat 2 36 0 322 261 0 33 chr1 215666722 215666814 -66526850 + L1MC4 LINE L1 6612 6700 -1342 305 217 12 0 chr1 215666838 215666921 -66526743 + (TA)n Simple_repeat Simple_repeat 2 85 0 336 245 0 61 chr1 215666927 215667025 -66526639 - L1MC4 LINE L1 -1337 6705 6614 192 268 0 0 chr1 215667031 215667113 -66526551 + (TA)n Simple_repeat Simple_repeat 2 83 0 476 356 23 0 chr1 215667113 215667290 -66526374 - MIR SINE MIR -1 261 81 811 95 17 17 chr1 215667841 215667957 -66525707 - FLAM_C SINE Alu -27 116 1 672 184 0 37 chr1 215668297 215668460 -66525204 - L1MA3 LINE L1 0 6305 6149 1720 126 55 41 chr1 215668495 215668788 -66524876 + AluSx SINE Alu 16 312 0 2485 145 16 40 chr1 215668791 215669287 -66524377 - L1MA3 LINE L1 -144 6161 5678 495 270 48 58 chr1 215670027 215670216 -66523448 - MER5A DNA MER1_type 0 189 3 253 411 7 0 chr1 215670387 215670528 -66523136 - L3 LINE CR1 -90 1487 1346 300 53 0 0 chr1 215671118 215671156 -66522508 + (TG)n Simple_repeat Simple_repeat 1 38 0 234 229 0 0 chr1 215671173 215671243 -66522421 + (TA)n Simple_repeat Simple_repeat 2 71 0 1937 169 0 3 chr1 215671386 215671699 -66521965 - AluJb SINE Alu 0 312 1 195 208 20 40 chr1 215673316 215673417 -66520247 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 2078 140 10 0 chr1 215673761 215674061 -66519603 - AluSx SINE Alu -4 308 6 1919 131 11 0 chr1 215674074 215674403 -66519261 - AluSx SINE Alu 0 332 1 263 167 0 56 chr1 215674423 215674495 -66519169 - MER116 DNA Mariner -7 73 6 1786 163 69 27 chr1 215674783 215675187 -66518477 - MSTC LTR MaLR -6 422 2 1089 246 56 66 chr1 215675657 215676080 -66517584 + MLT2C2 LTR ERVL 1 427 -37 249 33 0 0 chr1 215676080 215676110 -66517554 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 248 0 31 0 chr1 215676113 215676145 -66517519 + (CA)n Simple_repeat Simple_repeat 2 34 0 1089 246 56 66 chr1 215676145 215676184 -66517480 + MLT2C2 LTR ERVL 429 462 -2 269 282 325 5 chr1 215676195 215676383 -66517281 - MIR SINE MIR -1 261 14 1527 233 40 25 chr1 215677416 215677815 -66515849 - MLT1I LTR MaLR -2 407 3 276 289 36 0 chr1 215678845 215678928 -66514736 + HERVL LTR ERVL 1727 1812 -3842 333 344 65 0 chr1 215678968 215679154 -66514510 + HERVL LTR ERVL 2889 3086 -2568 404 352 54 84 chr1 215680903 215681538 -66512126 - L2 LINE L2 0 3272 2661 635 185 43 0 chr1 215681711 215681873 -66511791 - L1M1 LINE L1 -4792 2773 2605 290 316 10 20 chr1 215681973 215682071 -66511593 + MER5B DNA MER1_type 1 97 -81 330 277 67 25 chr1 215682299 215682418 -66511246 - L1M4 LINE L1 -3758 3807 3684 1425 224 113 59 chr1 215682423 215683088 -66510576 - L1M4 LINE L1 -4288 3277 2577 601 229 0 0 chr1 215683096 215683205 -66510459 - AluJo/FRAM SINE Alu -24 288 180 1120 184 0 0 chr1 215683205 215683390 -66510274 - AluSg/x SINE Alu -7 305 121 28304 107 13 17 chr1 215683393 215689653 -66504011 - L1PA7 LINE L1 -8 6461 206 492 261 42 37 chr1 215689641 215689856 -66503808 - L1M4 LINE L1 -5449 2116 1901 * 851 351 4 29 chr1 215690536 215690989 -66502675 - L1M4 LINE L1 -5506 1980 1539 1654 117 0 0 chr1 215690993 215691215 -66502449 - AluSg/x SINE Alu -8 304 83 2338 128 0 0 chr1 215693124 215693430 -66500234 + AluSx SINE Alu 3 308 -4 312 321 43 49 chr1 215693624 215693786 -66499878 + MER57-int LTR ERV1 2547 2707 -4094 21 0 0 0 chr1 215694117 215694138 -66499526 + AT_rich Low_complexity Low_complexity 1 21 0 3350 73 34 0 chr1 215694602 215695040 -66498624 - MLT2A2 LTR ERVL 0 453 1 219 114 0 0 chr1 215695285 215695320 -66498344 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 249 57 0 0 chr1 215695375 215695410 -66498254 + (TC)n Simple_repeat Simple_repeat 2 36 0 1804 148 72 28 chr1 215697846 215698205 -66495459 + THE1C LTR MaLR 1 375 0 301 308 0 26 chr1 215698212 215698329 -66495335 + MER57-int LTR ERV1 6558 6671 -866 1878 144 67 25 chr1 215699564 215699924 -66493740 + THE1C LTR MaLR 1 375 0 10560 114 10 34 chr1 215699924 215701542 -66492122 + THE1C-int LTR MaLR 1 1579 -1 2012 154 21 26 chr1 215701543 215701920 -66491744 + THE1C LTR MaLR 1 375 0 304 309 29 7 chr1 215702092 215702231 -66491433 - L1MEc LINE L1 -4722 1588 1447 351 363 56 9 chr1 215702261 215702476 -66491188 - L1MEc LINE L1 -4918 1213 989 319 239 103 19 chr1 215702493 215702648 -66491016 - L1MEc LINE L1 -5042 1077 910 22191 171 25 21 chr1 215702808 215704533 -66489131 - L1PA11 LINE L1 0 7612 5894 2292 124 52 3 chr1 215704533 215704880 -66488784 + THE1B LTR MaLR 1 364 0 22191 171 25 21 chr1 215704880 215709639 -66484025 - L1PA11 LINE L1 -1718 5894 11 393 318 108 9 chr1 215709650 215709873 -66483791 - L1MEc LINE L1 -5312 807 563 585 315 6 19 chr1 215710731 215710893 -66482771 - L2 LINE L2 -1 3271 3112 492 335 98 35 chr1 215711097 215711497 -66482167 - L2 LINE L2 -455 2859 2435 570 326 27 50 chr1 215712014 215712275 -66481389 + MIR SINE MIR 5 259 -3 227 384 46 20 chr1 215713250 215713401 -66480263 + L2 LINE L2 2601 2755 -559 3573 198 61 35 chr1 215713439 215714269 -66479395 + MER21B LTR ERV1 1 852 -11 512 208 175 0 chr1 215714479 215714633 -66479031 - Charlie8 DNA MER1_type -2149 268 88 1969 155 7 0 chr1 215714964 215715260 -66478404 + AluSx SINE Alu 1 298 -14 220 395 18 0 chr1 215715321 215715435 -66478229 - MIR SINE MIR -111 151 36 7804 234 19 64 chr1 215716876 215716957 -66476707 + L1M2 LINE L1 1 84 -6765 2610 143 36 2 chr1 215716957 215717369 -66476295 - MSTB LTR MaLR 0 426 1 7804 234 19 64 chr1 215717369 215719034 -66474630 + L1M2 LINE L1 84 1822 -5027 2637 61 0 0 chr1 215719034 215719345 -66474319 + AluY SINE Alu 1 311 0 7804 234 19 64 chr1 215719345 215719577 -66474087 + L1M2 LINE L1 1822 1871 -4978 1958 134 0 28 chr1 215719577 215719868 -66473796 - AluSx SINE Alu -27 285 3 7804 234 19 64 chr1 215719868 215720114 -66473550 + L1M2 LINE L1 1871 2127 -4722 875 150 8 0 chr1 215720118 215720245 -66473419 - AluSq/x SINE Alu -184 128 1 4491 169 13 60 chr1 215720256 215721298 -66472366 + L1M2 LINE L1 1897 2889 -3960 3570 223 24 10 chr1 215721329 215722220 -66471444 - L1 LINE L1 -3037 4171 3265 228 86 0 0 chr1 215722220 215722255 -66471409 + (TG)n Simple_repeat Simple_repeat 2 36 0 3570 223 24 10 chr1 215722255 215722284 -66471380 - L1 LINE L1 -3943 3265 3238 * 36851 95 7 8 chr1 215722280 215728422 -66465242 - L1PA6 LINE L1 -1 6153 13 710 176 50 19 chr1 215728410 215728619 -66465045 - L1 LINE L1 -3950 3258 3047 * 3732 212 58 2 chr1 215728728 215729737 -66463927 - L1 LINE L1 -4171 3038 1973 602 236 6 0 chr1 215729749 215729906 -66463758 + L1M2 LINE L1 2475 2632 -4217 877 276 148 28 chr1 215729920 215730203 -66463461 - L1 LINE L1 -5239 1970 1623 1093 320 82 38 chr1 215730356 215730915 -66462749 - L1 LINE L1 -6152 1057 474 34 0 0 0 chr1 215731356 215731390 -66462274 + AT_rich Low_complexity Low_complexity 1 34 0 22 35 0 0 chr1 215731646 215731675 -66461989 + AT_rich Low_complexity Low_complexity 1 29 0 223 252 154 32 chr1 215733327 215733450 -66460214 - L2 LINE L2 -669 2645 2508 485 157 0 20 chr1 215734379 215734481 -66459183 + CT-rich Low_complexity Low_complexity 2 101 0 308 274 94 94 chr1 215734744 215734967 -66458697 + MIR SINE MIR 2 224 -38 580 348 69 30 chr1 215735043 215735405 -66458259 + L3 LINE CR1 60 435 -1142 289 272 184 7 chr1 215735491 215735638 -66458026 - L3 LINE CR1 -731 846 674 184 229 0 0 chr1 215735740 215735775 -66457889 + MIR SINE MIR 73 107 -155 22 0 0 0 chr1 215736263 215736285 -66457379 + AT_rich Low_complexity Low_complexity 1 22 0 925 239 34 5 chr1 215737230 215737435 -66456229 + MER20 DNA MER1_type 9 219 0 318 335 37 21 chr1 215737729 215737917 -66455747 - MLT1K LTR MaLR -60 528 338 350 371 86 16 chr1 215738193 215738508 -66455156 - L2 LINE L2 -339 2975 2639 255 287 168 28 chr1 215738510 215738653 -66455011 + MIR SINE MIR 79 241 -21 1431 314 86 56 chr1 215738867 215739993 -66453671 - L2 LINE L2 -739 2575 1416 734 263 63 117 chr1 215739998 215740457 -66453207 - HAL1 LINE L1 -1120 1387 964 2164 108 0 3 chr1 215740457 215740744 -66452920 - AluSx SINE Alu -26 286 1 734 263 63 117 chr1 215740744 215740858 -66452806 - HAL1 LINE L1 -1543 964 845 360 0 0 0 chr1 215741091 215741131 -66452533 + (CA)n Simple_repeat Simple_repeat 2 41 0 784 87 16 0 chr1 215741499 215741626 -66452038 + L1M1 LINE L1 3298 3426 -4139 273 151 0 0 chr1 215742807 215742860 -66450804 + (CTA)n Simple_repeat Simple_repeat 1 53 0 253 336 64 18 chr1 215743469 215743579 -66450085 + L2 LINE L2 2979 3093 -179 241 239 64 18 chr1 215744319 215744428 -66449236 + L1ME LINE L1 5769 5882 -239 547 310 142 47 chr1 215744968 215745473 -66448191 + L2 LINE L2 2746 3313 0 27 0 0 0 chr1 215746299 215746326 -66447338 + AT_rich Low_complexity Low_complexity 1 27 0 220 279 44 0 chr1 215747848 215747916 -66445748 + G-rich Low_complexity Low_complexity 5 75 0 227 31 31 0 chr1 215748209 215748241 -66445423 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2028 106 3 34 chr1 215748243 215748535 -66445129 - AluSq SINE Alu -30 283 1 233 347 162 26 chr1 215748869 215749295 -66444369 - L2 LINE L2 -552 2762 2279 1616 176 4 18 chr1 215750354 215750633 -66443031 + AluJo SINE Alu 1 275 -37 198 0 0 0 chr1 215750637 215750659 -66443005 + (CA)n Simple_repeat Simple_repeat 1 22 0 297 314 198 14 chr1 215750966 215751173 -66442491 - MIR SINE MIR -16 246 2 24 53 0 0 chr1 215751583 215751621 -66442043 + AT_rich Low_complexity Low_complexity 1 38 0 2117 126 17 0 chr1 215751701 215751994 -66441670 - AluSg SINE Alu -12 298 1 338 339 61 17 chr1 215753168 215753283 -66440381 - L2 LINE L2 0 3272 3153 1218 129 24 93 chr1 215753366 215753415 -66440249 + AluJb SINE Alu 72 123 -189 1914 137 39 0 chr1 215753415 215753699 -66439965 - AluSx SINE Alu -17 295 1 1218 129 24 93 chr1 215753699 215753897 -66439767 + AluJb SINE Alu 123 302 -10 352 267 17 0 chr1 215758445 215758561 -66435103 - L1MA10 LINE L1 -1 6333 6216 7909 153 40 33 chr1 215758584 215759535 -66434129 - Ricksha DNA DNA -7 3239 2296 2602 101 20 3 chr1 215759535 215759890 -66433774 + THE1B LTR MaLR 4 364 0 10458 111 31 17 chr1 215759890 215761448 -66432216 + THE1B-int LTR MaLR 1 1580 0 2646 102 6 3 chr1 215761448 215761811 -66431853 + THE1B LTR MaLR 1 364 0 7909 153 40 33 chr1 215761811 215762052 -66431612 - Ricksha DNA DNA -950 2296 2058 550 77 13 0 chr1 215762052 215762130 -66431534 + MADE1 DNA Mariner 2 80 0 7909 153 40 33 chr1 215762130 215762460 -66431204 - Ricksha DNA DNA -1188 2058 1704 253 95 48 0 chr1 215762463 215762505 -66431159 - Ricksha DNA DNA -1761 285 242 644 201 14 7 chr1 215762512 215762651 -66431013 - Ricksha DNA DNA -1114 140 1 22 0 0 0 chr1 215762851 215762873 -66430791 + AT_rich Low_complexity Low_complexity 1 22 0 1984 135 7 10 chr1 215762922 215763225 -66430439 - AluSx SINE Alu -10 302 1 199 288 159 61 chr1 215763725 215763857 -66429807 + MIR SINE MIR 1 145 -117 382 200 12 0 chr1 215763934 215764014 -66429650 + MIR SINE MIR 172 252 -10 2329 93 3 3 chr1 215764177 215764479 -66429185 - AluSc SINE Alu -7 302 1 596 276 11 11 chr1 215764525 215764706 -66428958 + L1M4 LINE L1 1 181 -5774 3080 233 54 38 chr1 215764746 215764872 -66428792 + L1M4 LINE L1 2551 2674 -3360 791 128 8 8 chr1 215764872 215765005 -66428659 + L1PB4 LINE L1 6024 6156 0 3080 233 54 38 chr1 215765005 215765633 -66428031 + L1M4 LINE L1 2674 3331 -2703 2067 108 11 0 chr1 215765633 215765935 -66427729 + AluY SINE Alu 1 305 0 3080 233 54 38 chr1 215765935 215766298 -66427366 + L1M4 LINE L1 3331 3687 -2347 * 3382 171 22 58 chr1 215766295 215767055 -66426609 + L1MC1 LINE L1 5601 6333 0 3608 182 6 10 chr1 215767063 215767758 -66425906 + L1PA13 LINE L1 1268 1967 -4820 1296 123 5 15 chr1 215767761 215767956 -66425708 + AluSq SINE Alu 112 304 -9 11297 216 38 21 chr1 215767956 215771022 -66422642 + L1PA13 LINE L1 1977 5097 -1700 253 282 218 53 chr1 215771221 215771409 -66422255 - L2 LINE L2 0 3313 3095 273 316 248 0 chr1 215771420 215771537 -66422127 + L2 LINE L2 3119 3264 -8 1902 173 7 0 chr1 215771588 215771889 -66421775 + AluJo SINE Alu 1 303 -9 210 358 46 0 chr1 215772023 215772132 -66421532 - MIR SINE MIR -11 251 138 687 186 0 9 chr1 215772152 215772265 -66421399 - FLAM_C SINE Alu -29 114 3 2412 51 3 3 chr1 215772333 215772629 -66421035 + AluY SINE Alu 1 296 -15 210 317 0 0 chr1 215773618 215773678 -66419986 + L2 LINE L2 3242 3301 -12 1536 155 40 3 chr1 215773762 215774065 -66419599 + Charlie1 DNA MER1_type 2144 2457 -304 556 189 8 0 chr1 215774065 215774187 -66419477 - L1MA4 LINE L1 -5 7714 7592 254 179 18 0 chr1 215774188 215774244 -66419420 + CT-rich Low_complexity Low_complexity 1 57 0 1123 91 11 6 chr1 215774251 215774426 -66419238 + (TTTC)n Simple_repeat Simple_repeat 1 176 0 501 17 0 0 chr1 215774434 215774492 -66419172 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 1683 144 37 30 chr1 215774492 215774763 -66418901 - AluSx SINE Alu -39 273 1 12184 193 55 50 chr1 215774763 215776710 -66416954 - L1MA4 LINE L1 -115 7604 5668 864 146 8 0 chr1 215776710 215776840 -66416824 + FLAM_C SINE Alu 1 131 -12 12184 193 55 50 chr1 215776840 215778788 -66414876 - L1MA4 LINE L1 -2051 5668 3731 2267 40 37 81 chr1 215778788 215779109 -66414555 + AluY SINE Alu 1 307 -4 12184 193 55 50 chr1 215779109 215779341 -66414323 - L1MA4 LINE L1 -3988 3731 3502 269 89 22 0 chr1 215779341 215779386 -66414278 + (TG)n Simple_repeat Simple_repeat 1 46 0 12184 193 55 50 chr1 215779386 215780128 -66413536 - L1MA4 LINE L1 -4217 3502 2652 375 69 0 0 chr1 215780188 215780246 -66413418 - L1PA15 LINE L1 -6 6159 6102 5169 216 35 42 chr1 215780258 215783189 -66410475 - L1 LINE L1 -3016 3312 422 180 0 0 0 chr1 215783189 215783209 -66410455 + (TC)n Simple_repeat Simple_repeat 2 21 0 5169 216 35 42 chr1 215783209 215783615 -66410049 - L1 LINE L1 -5906 422 15 420 139 13 0 chr1 215783628 215783707 -66409957 + Charlie1 DNA MER1_type 2442 2521 -240 378 189 28 9 chr1 215783708 215783814 -66409850 + CT-rich Low_complexity Low_complexity 2 109 0 512 193 0 0 chr1 215783822 215783910 -66409754 - AluJ/FLAM SINE Alu -224 88 1 628 149 51 94 chr1 215783947 215784182 -66409482 + Charlie1 DNA MER1_type 2537 2761 0 339 244 35 0 chr1 215784270 215784356 -66409308 + L2 LINE L2 3225 3313 0 445 132 47 47 chr1 215784366 215784495 -66409169 + L1MB2 LINE L1 6043 6171 0 345 307 36 47 chr1 215785187 215785681 -66407983 - MER57-int LTR ERV1 -4309 4317 3144 1830 173 20 0 chr1 215787282 215787577 -66406087 - AluSx SINE Alu -11 301 1 293 230 0 119 chr1 215787773 215787899 -66405765 - MER57-int LTR ERV1 -6919 618 508 1896 175 51 154 chr1 215787899 215788710 -66404954 + LTR8A LTR ERV1 1 727 0 1070 283 34 20 chr1 215788797 215789154 -66404510 - MER57-int LTR ERV1 -4057 2274 1913 1747 194 104 19 chr1 215789165 215789635 -66404029 - LTR54 LTR ERV1 0 510 1 1776 115 0 67 chr1 215790012 215790048 -66403616 - Tigger4(Zombi) DNA MER2_type 0 2731 2694 2316 122 0 0 chr1 215790048 215790359 -66403305 + AluSx SINE Alu 2 312 0 1776 115 0 67 chr1 215790359 215790652 -66403012 - Tigger4(Zombi) DNA MER2_type -37 2694 2424 1225 142 15 5 chr1 215790659 215790863 -66402801 - Tigger4(Zombi) DNA MER2_type -2512 219 14 1775 176 10 3 chr1 215790901 215791190 -66402474 + AluJo SINE Alu 2 292 -20 249 373 41 6 chr1 215791216 215791385 -66402279 - L2 LINE L2 -787 2527 2353 536 318 107 33 chr1 215791451 215791561 -66402103 - L2 LINE L2 -1093 2221 2121 2246 117 3 0 chr1 215791561 215791870 -66401794 + AluSg SINE Alu 1 310 0 536 318 107 33 chr1 215791870 215792247 -66401417 - L2 LINE L2 -1193 2121 1698 25 0 0 0 chr1 215792591 215792616 -66401048 + AT_rich Low_complexity Low_complexity 1 25 0 2245 99 3 0 chr1 215792679 215792973 -66400691 + AluSx SINE Alu 1 295 -17 257 219 0 16 chr1 215793197 215793261 -66400403 + (CAA)n Simple_repeat Simple_repeat 1 63 0 21 57 0 0 chr1 215793349 215793384 -66400280 + AT_rich Low_complexity Low_complexity 1 35 0 349 305 50 34 chr1 215793676 215793997 -66399667 + MARNA DNA Mariner 242 567 -19 2432 65 0 3 chr1 215794255 215794549 -66399115 - AluY SINE Alu -18 293 1 225 282 0 0 chr1 215794554 215794625 -66399039 - L1MC/D LINE L1 -1984 5824 5754 224 238 48 0 chr1 215794643 215794706 -66398958 + MIR SINE MIR 196 261 -1 323 301 39 0 chr1 215794729 215794832 -66398832 - MIR SINE MIR -109 153 47 186 133 0 0 chr1 215794877 215794907 -66398757 + (GAAAA)n Simple_repeat Simple_repeat 3 32 0 26 30 0 0 chr1 215795340 215795373 -66398291 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr1 215796111 215796140 -66397524 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr1 215796319 215796348 -66397316 + AT_rich Low_complexity Low_complexity 1 29 0 2050 207 32 36 chr1 215796350 215796472 -66397192 - L1MA9 LINE L1 -38 6274 6153 2105 93 0 14 chr1 215796472 215796762 -66396902 + AluY SINE Alu 26 311 0 2050 207 32 36 chr1 215796762 215797224 -66396440 - L1MA9 LINE L1 -159 6153 5692 1071 170 11 0 chr1 215797224 215797406 -66396258 + AluSq SINE Alu 122 305 -8 737 234 32 0 chr1 215797406 215797594 -66396070 - L1MA9 LINE L1 -611 5701 5508 800 255 70 21 chr1 215797696 215797939 -66395725 + MIR SINE MIR 8 262 0 1821 235 131 51 chr1 215798009 215798461 -66395203 + MLT2F LTR ERVL 1 516 -147 1942 144 27 3 chr1 215798461 215798753 -66394911 - AluJo SINE Alu -9 303 5 1821 235 131 51 chr1 215798753 215798912 -66394752 + MLT2F LTR ERVL 516 661 -2 310 365 52 88 chr1 215799353 215799613 -66394051 - L2 LINE L2 -6 3266 3023 2329 62 0 3 chr1 215799613 215799901 -66393763 - AluY SINE Alu -24 287 1 310 365 52 88 chr1 215799901 215800024 -66393640 - L2 LINE L2 -249 3023 2897 366 169 79 11 chr1 215800278 215800367 -66393297 + MLT1A1 LTR MaLR 271 365 0 2111 122 40 3 chr1 215800376 215800672 -66392992 + AluSq SINE Alu 2 308 -5 361 236 99 52 chr1 215800674 215800886 -66392778 + MLT1I LTR MaLR 167 388 -21 2379 52 10 20 chr1 215801317 215801623 -66392041 - AluY SINE Alu -8 303 1 1594 57 0 0 chr1 215802073 215802292 -66391372 - AluY SINE Alu 0 310 92 1967 114 0 11 chr1 215802292 215802572 -66391092 - AluSx SINE Alu -35 277 1 21 0 0 0 chr1 215804644 215804665 -66388999 + AT_rich Low_complexity Low_complexity 1 21 0 2066 147 7 0 chr1 215804959 215805266 -66388398 + AluSx SINE Alu 1 309 -3 1850 173 0 3 chr1 215805535 215805841 -66387823 + AluJb SINE Alu 2 306 -6 24 53 0 0 chr1 215805887 215805925 -66387739 + AT_rich Low_complexity Low_complexity 1 38 0 614 232 72 22 chr1 215806241 215806422 -66387242 - MLT1J LTR MaLR -319 192 3 1143 90 0 0 chr1 215808512 215808678 -66384986 + (GAA)n Simple_repeat Simple_repeat 3 168 0 323 359 64 53 chr1 215808840 215809254 -66384410 - L2 LINE L2 -1363 1951 1528 2072 188 36 122 chr1 215809254 215809860 -66383804 + MLT2B3 LTR ERVL 1 554 0 323 359 64 53 chr1 215809860 215810008 -66383656 - L2 LINE L2 -1786 1528 1383 1627 192 91 39 chr1 215810181 215810311 -66383353 - MLT1C LTR MaLR 0 467 345 4476 99 20 40 chr1 215810311 215811016 -66382648 + LTR8 LTR ERV1 1 691 0 1627 192 91 39 chr1 215811016 215811323 -66382341 - MLT1C LTR MaLR -122 345 7 393 228 22 0 chr1 215811380 215811472 -66382192 + MIR SINE MIR 164 257 -5 21 36 0 0 chr1 215811533 215811561 -66382103 + AT_rich Low_complexity Low_complexity 1 28 0 267 357 35 21 chr1 215812158 215812301 -66381363 - MLT1I LTR MaLR -134 275 131 2133 122 13 3 chr1 215812532 215812835 -66380829 + AluSx SINE Alu 1 306 -6 1849 119 68 0 chr1 215813144 215813422 -66380242 + AluSx SINE Alu 1 297 -15 216 358 11 11 chr1 215814039 215814134 -66379530 - L2 LINE L2 -287 2985 2891 31507 35 16 1 chr1 215814313 215820338 -66373326 + L1PA2 LINE L1 3 6151 -4 448 368 13 4 chr1 215820534 215820773 -66372891 - L2 LINE L2 -924 2390 2150 661 95 48 0 chr1 215821160 215821265 -66372399 - L1MC1 LINE L1 -148 6185 6076 834 163 7 13 chr1 215821281 215821434 -66372230 + L1MC1 LINE L1 6182 6333 0 2028 146 3 0 chr1 215821445 215821746 -66371918 + AluSx SINE Alu 1 302 -10 650 257 61 31 chr1 215822074 215822406 -66371258 + LTR35 LTR ERV1 348 615 -3 1494 199 28 17 chr1 215823233 215823524 -66370140 + AluJo SINE Alu 3 296 -16 2179 112 10 3 chr1 215824083 215824379 -66369285 - AluSx SINE Alu -14 298 1 2110 102 0 3 chr1 215825132 215825472 -66368192 - AluSx SINE Alu 0 339 1 1761 140 2 134 chr1 215826429 215826529 -66367135 + MLT1B LTR MaLR 1 113 -277 2227 107 13 0 chr1 215826529 215826838 -66366826 + AluSq SINE Alu 1 313 0 1761 140 2 134 chr1 215826838 215826994 -66366670 + MLT1B LTR MaLR 113 177 -213 1629 117 35 0 chr1 215826994 215827262 -66366402 + AluSg SINE Alu 43 318 0 1761 140 2 134 chr1 215827262 215827452 -66366212 + MLT1B LTR MaLR 177 390 0 185 0 40 0 chr1 215827729 215827754 -66365910 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 218 258 86 47 chr1 215827957 215828085 -66365579 + L2 LINE L2 1993 2125 -1189 385 273 100 33 chr1 215828489 215828639 -66365025 + LTR50 LTR ERVL 44 203 -592 2596 161 20 75 chr1 215828727 215829231 -66364433 + LTR9 LTR ERV1 12 542 -70 1097 79 11 17 chr1 215829231 215829408 -66364256 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 2596 161 20 75 chr1 215829408 215829448 -66364216 + LTR9 LTR ERV1 542 477 -135 2107 139 10 0 chr1 215829448 215829757 -66363907 - AluSx SINE Alu 0 312 1 2596 161 20 75 chr1 215829757 215829887 -66363777 + LTR9 LTR ERV1 476 612 0 329 276 145 10 chr1 215830067 215830263 -66363401 + LTR50 LTR ERVL 320 497 -26 251 296 74 12 chr1 215830290 215830371 -66363293 - MLT1K LTR MaLR -380 208 123 750 311 68 81 chr1 215830428 215830995 -66362669 - L2 LINE L2 -1501 1813 1259 753 197 0 0 chr1 215830995 215831117 -66362547 + FLAM_C SINE Alu 2 123 -10 750 311 68 81 chr1 215831117 215831387 -66362277 - L2 LINE L2 -2055 1259 987 2212 106 17 0 chr1 215831409 215831784 -66361880 + AluSc SINE Alu 3 382 0 25 23 0 23 chr1 215831992 215832014 -66361650 + AT_rich Low_complexity Low_complexity 1 23 -19 1695 148 92 3 chr1 215832014 215832297 -66361367 - AluSx SINE Alu -3 309 2 25 23 0 23 chr1 215832297 215832317 -66361347 + AT_rich Low_complexity Low_complexity 23 42 0 215 304 0 36 chr1 215832360 215832416 -66361248 + L2 LINE L2 3133 3186 -86 750 86 13 118 chr1 215832688 215832840 -66360824 + AluSg/x SINE Alu 177 312 0 2339 71 3 7 chr1 215833273 215833570 -66360094 + AluY SINE Alu 1 296 -15 1667 231 124 40 chr1 215833785 215834151 -66359513 + L1MD2 LINE L1 5731 6164 -195 210 91 0 0 chr1 215834151 215834184 -66359480 + (CA)n Simple_repeat Simple_repeat 2 34 0 1667 231 124 40 chr1 215834184 215834388 -66359276 + L1MD2 LINE L1 6164 6349 -10 2318 99 0 10 chr1 215834804 215835116 -66358548 - AluSc SINE Alu 0 309 1 358 236 24 47 chr1 215835230 215835357 -66358307 + L2 LINE L2 3116 3239 -74 778 246 32 88 chr1 215835393 215835735 -66357929 - L2 LINE L2 -345 2969 2647 388 383 7 0 chr1 215835808 215835957 -66357707 - MIR SINE MIR -103 159 10 537 312 48 35 chr1 215836143 215836374 -66357290 + MLT1K LTR MaLR 143 376 -212 840 307 61 18 chr1 215836817 215837090 -66356574 + L2 LINE L2 2710 2970 -343 2415 137 35 21 chr1 215837090 215837512 -66356152 - MSTA LTR MaLR 0 428 1 840 307 61 18 chr1 215837512 215837625 -66356039 + L2 LINE L2 2970 3117 -196 2108 87 11 4 chr1 215837625 215837900 -66355764 - AluSp SINE Alu 0 313 37 840 307 61 18 chr1 215837900 215837927 -66355737 + L2 LINE L2 3117 3141 -172 295 277 96 74 chr1 215837977 215838248 -66355416 - HAL1 LINE L1 -1843 664 388 229 294 43 0 chr1 215838329 215838421 -66355243 + L1M4 LINE L1 4958 5053 -1093 1398 134 59 0 chr1 215838470 215838724 -66354940 + L1MA9 LINE L1 6028 6296 -16 1346 31 0 6 chr1 215838735 215838897 -66354767 - L1PA3 LINE L1 0 6155 5995 236 75 0 25 chr1 215838897 215838928 -66354736 + L1MA9 LINE L1 6281 6312 0 1209 176 118 47 chr1 215840542 215840838 -66352826 + L1MC1 LINE L1 5926 6242 -91 1862 168 33 71 chr1 215840863 215841049 -66352615 - MLT2C2 LTR ERVL -40 414 222 2277 104 0 19 chr1 215841049 215841365 -66352299 - AluSg SINE Alu 0 310 1 1862 168 33 71 chr1 215841365 215841393 -66352271 - MLT2C2 LTR ERVL -232 222 194 1284 204 82 48 chr1 215841393 215841745 -66351919 - MLT1A1 LTR MaLR -1 364 1 1862 168 33 71 chr1 215841745 215841981 -66351683 - MLT2C2 LTR ERVL -260 194 1 1147 256 43 24 chr1 215841981 215842282 -66351382 - L1ME LINE L1 -677 5487 5193 2027 149 7 0 chr1 215842282 215842584 -66351080 - AluSx SINE Alu -8 304 1 1147 256 43 24 chr1 215842584 215842906 -66350758 - L1ME LINE L1 -971 5193 4859 2442 228 50 41 chr1 215843105 215843837 -66349827 - L1MD2 LINE L1 0 6359 5621 1542 225 102 8 chr1 215843874 215844238 -66349426 + MLT1D LTR MaLR 1 398 -107 271 178 156 33 chr1 215844298 215844388 -66349276 + MLT1D LTR MaLR 381 481 -24 727 307 126 16 chr1 215844543 215845080 -66348584 - L2 LINE L2 -2 3311 2698 7465 82 33 11 chr1 215845083 215846143 -66347521 - L1PA7 LINE L1 -1156 4990 3908 6882 62 7 0 chr1 215846144 215847286 -66346378 + L1PA7 LINE L1 4994 6140 -14 270 298 210 52 chr1 215847398 215847941 -66345723 - L2 LINE L2 -741 2573 1945 537 328 139 25 chr1 215847943 215848382 -66345282 - L2 LINE L2 -2164 1150 662 22 35 0 0 chr1 215849120 215849149 -66344515 + AT_rich Low_complexity Low_complexity 1 29 0 189 289 0 0 chr1 215849192 215849244 -66344420 + L2 LINE L2 3261 3312 -1 35 0 0 0 chr1 215851258 215851293 -66342371 + AT_rich Low_complexity Low_complexity 1 35 0 2088 116 3 3 chr1 215851878 215852188 -66341476 + AluSg SINE Alu 1 310 0 183 42 0 0 chr1 215853696 215853720 -66339944 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr1 215854002 215854026 -66339638 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr1 215854167 215854209 -66339455 + AT_rich Low_complexity Low_complexity 1 42 0 195 204 0 0 chr1 215854398 215854447 -66339217 + (TG)n Simple_repeat Simple_repeat 2 50 0 266 295 89 68 chr1 215856902 215857092 -66336572 - MIR SINE MIR -49 213 20 251 185 0 99 chr1 215858659 215858740 -66334924 - LTR66 LTR ERVL -148 462 390 6798 188 155 62 chr1 215860855 215862473 -66331191 + L1MC1 LINE L1 20 1487 -4939 1820 149 23 20 chr1 215862473 215862774 -66330890 - AluJb SINE Alu -10 302 1 6798 188 155 62 chr1 215862774 215864412 -66329252 + L1MC1 LINE L1 1487 3576 -2850 782 184 21 0 chr1 215864422 215864563 -66329101 + FRAM SINE Alu 8 151 -25 6599 219 25 30 chr1 215864572 215865374 -66328290 + L1MC1 LINE L1 3564 4369 -2244 1925 136 43 13 chr1 215865374 215865675 -66327989 - AluSx SINE Alu -2 310 1 6599 219 25 30 chr1 215865675 215865728 -66327936 + L1MC1 LINE L1 4369 4421 -2192 261 83 0 0 chr1 215865728 215865764 -66327900 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 6599 219 25 30 chr1 215865764 215866249 -66327415 + L1MC1 LINE L1 4421 4907 -1706 1610 183 25 7 chr1 215866249 215866533 -66327131 + AluJb SINE Alu 1 289 -23 6599 219 25 30 chr1 215866533 215867980 -66325684 + L1MC1 LINE L1 4907 6342 -271 2136 87 0 17 chr1 215867980 215868302 -66325362 + AluY SINE Alu 1 317 0 6599 219 25 30 chr1 215868302 215868555 -66325109 + L1MC1 LINE L1 6342 6595 -18 228 324 88 29 chr1 215868774 215868910 -66324754 + L2 LINE L2 337 480 -2834 591 278 26 36 chr1 215869161 215869355 -66324309 + L2 LINE L2 3119 3310 -3 239 373 9 0 chr1 215869563 215869673 -66323991 + MLT1J LTR MaLR 270 380 -131 15695 139 22 29 chr1 215869807 215871055 -66322609 + Tigger2 DNA MER2_type 1 1256 -1462 2010 111 65 0 chr1 215871055 215871334 -66322330 + AluSg SINE Alu 10 306 -4 15695 139 22 29 chr1 215871334 215872460 -66321204 + Tigger2 DNA MER2_type 1256 2357 -361 2592 56 3 0 chr1 215872460 215872766 -66320898 + AluY SINE Alu 1 307 -4 15695 139 22 29 chr1 215872766 215873126 -66320538 + Tigger2 DNA MER2_type 2357 2718 0 353 321 158 0 chr1 215873150 215873315 -66320349 + L2 LINE L2 2716 2906 -408 234 0 0 0 chr1 215873333 215873359 -66320305 + (T)n Simple_repeat Simple_repeat 1 26 0 344 324 189 44 chr1 215873359 215873702 -66319962 + L2 LINE L2 2921 3313 0 5983 99 21 2 chr1 215873892 215875612 -66318052 + L1PA14 LINE L1 4419 6160 -1 296 240 40 0 chr1 215875902 215875977 -66317687 - L2 LINE L2 -405 2909 2832 306 174 110 46 chr1 215876027 215876136 -66317528 + L1ME4a LINE L1 6006 6121 0 22 0 0 0 chr1 215876136 215876158 -66317506 + AT_rich Low_complexity Low_complexity 1 22 0 583 174 97 84 chr1 215876184 215876247 -66317417 + FRAM SINE Alu 9 70 -242 2366 94 3 0 chr1 215876247 215876555 -66317109 + AluSx SINE Alu 1 309 -3 583 174 97 84 chr1 215876555 215876646 -66317018 + FRAM SINE Alu 70 165 -11 211 293 17 0 chr1 215876957 215877015 -66316649 + MIR SINE MIR 76 134 -128 29 28 0 0 chr1 215877185 215877221 -66316443 + AT_rich Low_complexity Low_complexity 1 36 0 1883 89 0 31 chr1 215878256 215878513 -66315151 + AluSq SINE Alu 60 308 -5 2039 109 14 3 chr1 215878840 215879133 -66314531 - AluSq SINE Alu -9 304 9 273 300 158 25 chr1 215879189 215879309 -66314355 - MIR SINE MIR -73 189 54 416 263 178 28 chr1 215879380 215879593 -66314071 + MIR SINE MIR 15 259 -3 1958 155 49 3 chr1 215879746 215880094 -66313570 - THE1B LTR MaLR 0 364 1 1081 213 114 30 chr1 215880176 215880321 -66313343 - MER69 DNA AcHobo -13 2513 2382 2370 86 80 0 chr1 215880321 215880670 -66312994 + MER51B LTR ERV1 1 377 0 1081 213 114 30 chr1 215880670 215880928 -66312736 - MER69 DNA AcHobo -144 2382 2076 365 232 30 10 chr1 215881021 215881120 -66312544 - MER69 DNA AcHobo -481 2045 1945 408 195 26 0 chr1 215881131 215881208 -66312456 - MER69 DNA AcHobo -2433 93 15 2028 122 10 10 chr1 215881693 215881996 -66311668 - AluSx SINE Alu -9 303 1 749 279 36 16 chr1 215882107 215882358 -66311306 - MIR SINE MIR 0 262 7 224 290 65 32 chr1 215882778 215882902 -66310762 + MIR SINE MIR 18 145 -63 508 316 46 12 chr1 215883148 215883471 -66310193 - L1MC4a LINE L1 -1900 5908 5575 24 53 0 0 chr1 215883476 215883514 -66310150 + AT_rich Low_complexity Low_complexity 1 38 0 192 309 0 75 chr1 215883529 215883623 -66310041 - L2 LINE L2 0 3313 3227 189 0 0 0 chr1 215883660 215883681 -66309983 + (CA)n Simple_repeat Simple_repeat 1 21 0 228 279 23 12 chr1 215883765 215883851 -66309813 + LTR16A1 LTR ERVL 1 87 -370 249 307 51 44 chr1 215883860 215883997 -66309667 + LTR16A LTR ERVL 307 444 -6 200 35 35 0 chr1 215884297 215884326 -66309338 + (TC)n Simple_repeat Simple_repeat 2 31 0 306 262 12 0 chr1 215884337 215884421 -66309243 + (TA)n Simple_repeat Simple_repeat 1 85 0 332 291 129 47 chr1 215884742 215884939 -66308725 - L1MC4a LINE L1 -1312 4834 4654 1709 148 40 4 chr1 215884939 215885217 -66308447 + AluJo SINE Alu 4 291 -21 332 291 129 47 chr1 215885217 215886014 -66307650 - L1MC4a LINE L1 -1492 4654 3759 2413 70 0 0 chr1 215886025 215886323 -66307341 - AluY SINE Alu -13 298 1 2268 123 0 0 chr1 215886410 215886720 -66306944 - AluSx SINE Alu 0 312 3 640 312 55 45 chr1 215886739 215887136 -66306528 - LTR67 LTR ERVL 0 557 157 48 32 0 0 chr1 215887195 215887257 -66306407 + AT_rich Low_complexity Low_complexity 1 62 0 1887 86 22 30 chr1 215887257 215887524 -66306140 - AluSc SINE Alu -43 266 2 2117 192 31 73 chr1 215887526 215888005 -66305659 - MLT2B2 LTR ERVL -56 459 1 417 210 34 107 chr1 215888381 215888614 -66305050 - L1MC4 LINE L1 -1 8041 7826 1621 186 53 51 chr1 215888658 215888779 -66304885 - L1ME2 LINE L1 -10 6154 6035 1430 204 5 91 chr1 215888779 215889176 -66304488 - MLT1A1 LTR MaLR -2 363 1 1621 186 53 51 chr1 215889176 215889560 -66304104 - L1ME2 LINE L1 -129 6035 5648 1755 199 89 21 chr1 215889674 215890111 -66303553 + MLT1C LTR MaLR 1 467 0 28 0 0 0 chr1 215890368 215890396 -66303268 + AT_rich Low_complexity Low_complexity 1 28 0 2259 91 0 13 chr1 215890396 215890694 -66302970 - AluSx SINE Alu -18 294 1 30 27 0 0 chr1 215891105 215891142 -66302522 + AT_rich Low_complexity Low_complexity 1 37 0 531 310 218 23 chr1 215891183 215891812 -66301852 + L2 LINE L2 1925 2430 -884 2213 114 0 10 chr1 215891812 215892120 -66301544 - AluSg SINE Alu -3 307 3 531 310 218 23 chr1 215892120 215892132 -66301532 + L2 LINE L2 2430 2438 -876 252 0 0 0 chr1 215892132 215892160 -66301504 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 531 310 218 23 chr1 215892160 215892287 -66301377 + L2 LINE L2 2438 2844 -470 260 324 42 0 chr1 215892553 215892624 -66301040 + L2 LINE L2 3182 3255 -58 183 100 0 0 chr1 215892642 215892672 -66300992 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 242 341 53 15 chr1 215893788 215893920 -66299744 + MIR SINE MIR 15 151 -111 755 144 8 0 chr1 215894969 215895094 -66298570 + AluSp/q SINE Alu 184 309 -4 31 68 0 0 chr1 215895251 215895310 -66298354 + AT_rich Low_complexity Low_complexity 1 59 0 2304 100 0 7 chr1 215895465 215895764 -66297900 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr1 215895915 215895937 -66297727 + AT_rich Low_complexity Low_complexity 1 22 0 1813 176 91 0 chr1 215896325 215896689 -66296975 + MSTA LTR MaLR 1 397 -31 290 284 11 11 chr1 215896795 215896883 -66296781 + MIR SINE MIR 47 134 -128 1179 162 23 19 chr1 215897326 215897542 -66296122 + MLT1A1 LTR MaLR 2 218 -147 514 201 83 25 chr1 215897850 215898054 -66295610 + L1ME LINE L1 5258 5473 -689 317 263 50 0 chr1 215898274 215898354 -66295310 + L2 LINE L2 3223 3306 -7 227 298 71 24 chr1 215898769 215898853 -66294811 + MIR SINE MIR 66 153 -55 306 365 115 38 chr1 215899220 215899508 -66294156 + L2 LINE L2 2962 3271 -1 27 0 0 0 chr1 215900546 215900573 -66293091 + AT_rich Low_complexity Low_complexity 1 27 0 31794 110 11 48 chr1 215900833 215904825 -66288839 - L1PA7 LINE L1 -5 6149 2011 2072 150 14 38 chr1 215904825 215905252 -66288412 - L1MA9 LINE L1 0 6312 5896 31794 110 11 48 chr1 215905252 215905597 -66288067 - L1PA7 LINE L1 -4143 2011 1655 2256 110 0 0 chr1 215905597 215905897 -66287767 + AluY SINE Alu 1 300 -11 31794 110 11 48 chr1 215905897 215907937 -66285727 - L1PA7 LINE L1 -4499 1655 12 14163 130 20 38 chr1 215910092 215912493 -66281171 - Tigger1 DNA MER2_type -36 2382 24 190 369 165 0 chr1 215914067 215914170 -66279494 + L2 LINE L2 3148 3267 -5 195 129 0 0 chr1 215914176 215914207 -66279457 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 24 67 0 0 chr1 215914630 215914675 -66278989 + AT_rich Low_complexity Low_complexity 1 45 0 756 155 0 0 chr1 215914720 215914836 -66278828 + FLAM_C SINE Alu 1 116 -17 384 71 0 0 chr1 215914836 215914892 -66278772 + (TC)n Simple_repeat Simple_repeat 2 57 0 193 104 30 45 chr1 215914897 215914964 -66278700 + (TA)n Simple_repeat Simple_repeat 1 66 0 329 329 170 7 chr1 215915477 215915888 -66277776 + L2 LINE L2 1546 2023 -1291 678 235 63 63 chr1 215916163 215916384 -66277280 + MIR SINE MIR 2 222 -40 327 245 150 70 chr1 215916431 215916581 -66277083 + MLT1L LTR MaLR 399 570 -45 1654 179 10 20 chr1 215916581 215916877 -66276787 - AluJb SINE Alu -17 295 3 327 245 150 70 chr1 215916877 215916926 -66276738 + MLT1L LTR MaLR 570 614 -1 539 335 50 42 chr1 215917020 215917378 -66276286 + L2 LINE L2 2156 2516 -798 2907 289 60 14 chr1 215917385 215918358 -66275306 - L2 LINE L2 -407 2907 1891 274 229 237 8 chr1 215918508 215918626 -66275038 + L2 LINE L2 3164 3308 -5 23 33 0 0 chr1 215919537 215919567 -66274097 + AT_rich Low_complexity Low_complexity 1 30 0 262 275 29 0 chr1 215920286 215920355 -66273309 + MLT1F1 LTR MaLR 66 136 -431 2374 196 47 33 chr1 215920358 215920545 -66273119 + L1MD3 LINE L1 7416 7599 -396 2201 114 7 0 chr1 215920545 215920853 -66272811 + AluY SINE Alu 1 310 -1 2374 196 47 33 chr1 215920853 215921237 -66272427 + L1MD3 LINE L1 7599 7995 0 874 163 59 0 chr1 215921639 215921792 -66271872 - Tigger2 DNA MER2_type -14 2704 2543 1414 108 88 8 chr1 215922045 215922296 -66271368 - Tigger2 DNA MER2_type -175 2543 2273 412 167 13 39 chr1 215922276 215922354 -66271310 - Tigger2 DNA MER2_type -2642 76 1 * 205 353 29 22 chr1 215923387 215923526 -66270138 + MIR SINE MIR 82 221 -41 2265 132 19 22 chr1 215923536 215923901 -66269763 + THE1B LTR MaLR 1 364 0 11157 102 13 8 chr1 215923901 215925473 -66268191 + THE1B-int LTR MaLR 1 1580 0 1964 168 31 11 chr1 215925473 215925830 -66267834 + THE1B LTR MaLR 1 364 0 640 225 88 6 chr1 215927689 215927849 -66265815 - MER5B DNA MER1_type 0 178 6 262 311 91 15 chr1 215927914 215928046 -66265618 - L2 LINE L2 -4 3309 3168 372 341 18 77 chr1 215928153 215928323 -66265341 + MER5B DNA MER1_type 1 160 -18 913 191 118 29 chr1 215928553 215928799 -66264865 - ORSL DNA AcHobo -7 268 1 199 375 25 0 chr1 215929288 215929368 -66264296 + L2 LINE L2 3184 3265 -7 184 312 11 54 chr1 215930750 215930843 -66262821 - MIR3 SINE MIR 0 208 120 231 171 0 0 chr1 215930852 215930887 -66262777 + LTR33 LTR ERVL 233 267 -254 595 282 153 14 chr1 215930906 215931122 -66262542 + MIR SINE MIR 13 258 -4 527 272 99 30 chr1 215931742 215931944 -66261720 - LTR33 LTR ERVL -2 519 304 307 315 90 15 chr1 215932410 215932610 -66261054 - ERVL LTR ERVL -379 5385 5171 1100 325 73 19 chr1 215932690 215933157 -66260507 - ERVL LTR ERVL -1171 4593 4102 581 308 30 0 chr1 215933326 215933495 -66260169 - LTR33 LTR ERVL -324 197 24 342 346 8 0 chr1 215933722 215933852 -66259812 + MIR SINE MIR 23 153 -109 1725 180 0 7 chr1 215934064 215934353 -66259311 + AluJb SINE Alu 3 289 -23 815 284 78 60 chr1 215934856 215935651 -66258013 + L1MEc LINE L1 1557 2365 -4031 5153 25 2 0 chr1 215936147 215936751 -66256913 + L1PA4 LINE L1 5546 6150 -5 195 42 0 0 chr1 215936813 215936837 -66256827 + (A)n Simple_repeat Simple_repeat 1 24 0 558 286 80 9 chr1 215937449 215937673 -66255991 - MLT1J1 LTR MaLR -2 444 205 236 296 20 31 chr1 215937672 215937770 -66255894 - MLT1J2 LTR MaLR -295 155 59 * 682 261 35 50 chr1 215940543 215940803 -66252861 + L1ME1 LINE L1 5906 6161 -5 982 229 101 86 chr1 215940808 215941358 -66252306 + L2 LINE L2 2738 3313 0 320 229 38 168 chr1 215941705 215942050 -66251614 - L2 LINE L2 -4 3268 2969 610 236 0 21 chr1 215942136 215942328 -66251336 + MER20 DNA MER1_type 1 218 -1 250 320 13 0 chr1 215942851 215942929 -66250735 - MIR3 SINE MIR -53 155 77 276 196 65 0 chr1 215943224 215943295 -66250369 + MIR SINE MIR 81 156 -52 697 303 40 13 chr1 215944331 215944559 -66249105 + MIR SINE MIR 13 246 -16 271 309 71 16 chr1 215944638 215944764 -66248900 + MIR SINE MIR 8 140 -122 203 362 0 0 chr1 215944920 215944989 -66248675 + L2 LINE L2 3185 3253 -19 880 136 0 0 chr1 215945075 215945207 -66248457 + FLAM_C SINE Alu 2 133 0 954 317 129 52 chr1 215946195 215947634 -66246030 + L2 LINE L2 785 2349 -965 1551 177 27 82 chr1 215947634 215948047 -66245617 - MLT1B LTR MaLR 0 390 1 954 317 129 52 chr1 215948047 215948123 -66245541 + L2 LINE L2 2349 2418 -896 368 270 282 0 chr1 215948129 215948303 -66245361 + MIR SINE MIR 1 223 -39 2164 136 0 0 chr1 215948562 215948871 -66244793 + AluSx SINE Alu 4 312 0 242 375 141 17 chr1 215948886 215949177 -66244487 + L2 LINE L2 2619 2945 -369 2075 150 0 0 chr1 215949535 215949829 -66243835 - AluSx SINE Alu -18 294 1 1039 111 0 0 chr1 215949829 215949964 -66243700 - AluSq/x SINE Alu -177 135 1 2191 98 0 26 chr1 215950059 215950365 -66243299 + AluSq SINE Alu 1 298 -15 21 36 0 0 chr1 215951046 215951074 -66242590 + AT_rich Low_complexity Low_complexity 1 28 0 205 375 84 25 chr1 215951613 215951898 -66241766 + L2 LINE L2 1698 1999 -1315 362 338 7 7 chr1 215952597 215952733 -66240931 + L2 LINE L2 2234 2369 -945 25 0 0 0 chr1 215952784 215952809 -66240855 + AT_rich Low_complexity Low_complexity 1 25 0 203 286 0 0 chr1 215952819 215952875 -66240789 + (TA)n Simple_repeat Simple_repeat 2 57 0 364 291 24 16 chr1 215953007 215953134 -66240530 + L1MEd LINE L1 239 366 -5753 235 285 33 51 chr1 215953499 215953673 -66239991 - MLT1I LTR MaLR -251 158 1 219 335 101 19 chr1 215953681 215953839 -66239825 + L2 LINE L2 2494 2664 -650 1111 91 55 12 chr1 215955073 215955238 -66238426 + AluSg/x SINE Alu 132 303 -9 673 254 35 20 chr1 215955398 215955595 -66238069 + MIR SINE MIR 21 220 -42 22 35 0 0 chr1 215955775 215955804 -66237860 + AT_rich Low_complexity Low_complexity 1 29 0 1376 244 5 46 chr1 215956116 215956506 -66237158 - MLT1A2 LTR MaLR 0 374 1 253 251 251 65 chr1 215956772 215957051 -66236613 + L2 LINE L2 2810 3140 -173 262 132 0 0 chr1 215957074 215957112 -66236552 - MER39 LTR ERV1 -669 38 1 3032 191 61 8 chr1 215957127 215957620 -66236044 + MER39 LTR ERV1 37 573 -134 2454 68 3 0 chr1 215957620 215957916 -66235748 + AluSp SINE Alu 1 297 -16 3032 191 61 8 chr1 215957916 215958059 -66235605 + MER39 LTR ERV1 573 707 0 440 224 103 51 chr1 215958065 215958221 -66235443 + L2 LINE L2 3146 3309 -4 21 0 0 0 chr1 215958526 215958547 -66235117 + AT_rich Low_complexity Low_complexity 1 21 0 465 274 67 7 chr1 215960494 215960629 -66233035 - MIR3 SINE MIR -24 184 42 205 248 59 89 chr1 215960769 215960870 -66232794 + MIR SINE MIR 16 113 -149 208 376 6 39 chr1 215961691 215961872 -66231792 + L2 LINE L2 1838 2012 -1302 22 35 0 0 chr1 215962140 215962169 -66231495 + AT_rich Low_complexity Low_complexity 1 29 0 851 225 0 12 chr1 215962195 215962368 -66231296 - AluJo SINE Alu -141 171 1 902 247 61 63 chr1 215962437 215963008 -66230656 + L1M4 LINE L1 2294 2863 -3283 663 236 136 77 chr1 215963098 215964006 -66229658 + L1M4 LINE L1 2843 3803 -2343 320 291 128 27 chr1 215964128 215964502 -66229162 - L1ME LINE L1 -445 5676 5265 2013 141 0 7 chr1 215964557 215964855 -66228809 - AluSx SINE Alu -16 296 1 278 50 25 0 chr1 215965518 215965558 -66228106 + (TG)n Simple_repeat Simple_repeat 2 42 0 1037 258 123 5 chr1 215965776 215966225 -66227439 + L1ME2 LINE L1 3598 4099 -2047 * 5444 140 74 23 chr1 215966222 215966294 -66227370 - L1MC1 LINE L1 0 6333 6266 2429 69 0 3 chr1 215966294 215966599 -66227065 + AluY SINE Alu 1 304 -7 5444 140 74 23 chr1 215966599 215967619 -66226045 - L1MC1 LINE L1 -67 6266 5189 1595 243 47 29 chr1 215967630 215968226 -66225438 + L1ME2 LINE L1 4095 4701 -1445 1785 247 43 36 chr1 215968236 215968578 -66225086 + L1ME2 LINE L1 4901 5239 -925 2550 68 0 0 chr1 215968578 215968888 -66224776 + AluY SINE Alu 1 310 -1 1785 247 43 36 chr1 215968888 215969484 -66224180 + L1ME2 LINE L1 5239 5848 -316 591 249 68 19 chr1 215969520 215969725 -66223939 + L1ME2 LINE L1 5919 6133 -31 5033 164 24 3 chr1 215971248 215972180 -66221484 - L1MB7 LINE L1 -8 6176 5225 281 219 31 0 chr1 215972670 215972734 -66220930 - LTR67 LTR ERVL -8 549 484 281 219 31 0 chr1 215973165 215973229 -66220435 - LTR67 LTR ERVL -8 549 484 248 192 0 0 chr1 215973429 215973481 -66220183 - MLT2B3 LTR ERVL 0 554 503 474 18 0 0 chr1 215973528 215973583 -66220081 + (AATAG)n Simple_repeat Simple_repeat 3 57 0 2233 234 34 20 chr1 215973584 215974080 -66219584 - MLT2B3 LTR ERVL -49 505 3 209 209 0 0 chr1 215974456 215974499 -66219165 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 583 349 132 32 chr1 215974500 215975384 -66218280 - L2 LINE L2 -4 3309 2325 222 289 48 0 chr1 215975393 215975476 -66218188 + L2 LINE L2 2332 2418 -896 184 238 0 24 chr1 215975541 215975583 -66218081 - L2 LINE L2 -345 2969 2929 241 88 0 0 chr1 215975689 215975723 -66217941 + MLT2B2 LTR ERVL 426 459 -56 251 54 27 0 chr1 215975725 215975762 -66217902 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 201 269 0 19 chr1 215977934 215977986 -66215678 + CT-rich Low_complexity Low_complexity 5 55 0 258 32 0 0 chr1 215979112 215979143 -66214521 + (TC)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr1 215979142 215979165 -66214499 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 31 58 0 0 chr1 215979236 215979288 -66214376 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr1 215979664 215979687 -66213977 + (A)n Simple_repeat Simple_repeat 1 23 0 363 96 0 0 chr1 215981480 215981532 -66212132 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 183 42 0 0 chr1 215982433 215982457 -66211207 + (TA)n Simple_repeat Simple_repeat 2 25 0 1248 97 136 19 chr1 215982564 215982770 -66210894 + MER30 DNA MER1_type 1 230 0 666 190 8 0 chr1 215983155 215983276 -66210388 - FRAM SINE Alu -47 129 8 4650 195 55 97 chr1 215984828 215985066 -66208598 + Charlie1a DNA MER1_type 1 248 -2513 1108 160 164 52 chr1 215985066 215985334 -66208330 + AluJo SINE Alu 2 299 -3 4650 195 55 97 chr1 215985334 215985966 -66207698 + Charlie1a DNA MER1_type 248 782 -1979 7592 27 2 2 chr1 215985966 215987281 -66206383 - L1PA4 LINE L1 -3 6152 4838 4650 195 55 97 chr1 215987281 215987920 -66205744 + Charlie1a DNA MER1_type 782 1447 -8 1385 161 70 4 chr1 215988377 215988619 -66205045 - MER2 DNA MER2_type -87 258 1 2615 229 10 2 chr1 215988625 215989136 -66204528 - MLT2B3 LTR ERVL -39 515 1 1021 188 153 46 chr1 215989158 215989419 -66204245 + AluJo SINE Alu 1 289 -13 26 0 0 0 chr1 215989424 215989450 -66204214 + AT_rich Low_complexity Low_complexity 1 26 0 189 171 0 0 chr1 215989470 215989505 -66204159 + (TG)n Simple_repeat Simple_repeat 2 36 0 294 373 27 53 chr1 215991121 215991271 -66202393 - L2 LINE L2 -9 3263 3118 393 294 122 93 chr1 215992086 215992528 -66201136 - L2 LINE L2 -1 3312 2858 305 333 35 9 chr1 215993012 215993126 -66200538 + L2 LINE L2 3156 3272 0 248 338 34 22 chr1 215993235 215993436 -66200228 - MIR SINE MIR -50 212 10 183 298 26 61 chr1 215993978 215994092 -66199572 + MIR3 SINE MIR 96 205 -3 180 217 0 0 chr1 215994187 215994233 -66199431 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 338 326 120 65 chr1 215994854 215995286 -66198378 - L2 LINE L2 0 3313 2858 318 26 0 0 chr1 215995453 215995492 -66198172 + (TG)n Simple_repeat Simple_repeat 1 39 0 213 349 184 7 chr1 215996892 215997044 -66196620 + MIR SINE MIR 25 203 -59 2372 91 7 0 chr1 215997258 215997566 -66196098 - AluSg SINE Alu 0 310 1 320 297 35 7 chr1 215997591 215997736 -66195928 + L1ME4a LINE L1 5672 5820 -301 22 0 0 0 chr1 215997833 215997855 -66195809 + AT_rich Low_complexity Low_complexity 1 22 0 228 203 40 40 chr1 215997856 215997930 -66195734 + L1ME4a LINE L1 5986 6059 -62 26 50 0 0 chr1 215998429 215998469 -66195195 + AT_rich Low_complexity Low_complexity 1 40 0 325 132 0 0 chr1 215999954 216000010 -66193654 - MLT2B1 LTR ERVL 0 520 389 180 176 0 0 chr1 216000018 216000052 -66193612 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 236 128 0 0 chr1 216000086 216000125 -66193539 - MLT2B2 LTR ERVL -40 475 437 6534 47 1 0 chr1 216002738 216003542 -66190122 + L1PA6 LINE L1 5350 6154 0 2658 39 0 3 chr1 216004616 216004949 -66188715 - AluY SINE Alu 0 332 1 299 24 0 24 chr1 216005673 216005714 -66187950 + (CA)n Simple_repeat Simple_repeat 1 40 0 2344 91 0 0 chr1 216007307 216007614 -66186050 + AluSq SINE Alu 1 307 -6 753 63 39 0 chr1 216007919 216008046 -66185618 + (TTTC)n Simple_repeat Simple_repeat 2 133 0 228 261 0 31 chr1 216008048 216008113 -66185551 - Charlie4 DNA MER1_type -16 1945 1883 199 387 0 0 chr1 216008375 216008437 -66185227 + MIR SINE MIR 36 97 -111 236 217 0 0 chr1 216008736 216008782 -66184882 - L2 LINE L2 0 3313 3268 276 230 35 23 chr1 216008817 216008904 -66184760 - L1ME4a LINE L1 -153 5968 5881 226 340 107 0 chr1 216008965 216009068 -66184596 - L2 LINE L2 0 3313 3200 288 291 15 0 chr1 216009147 216009281 -66184383 - L1ME4a LINE L1 -365 5756 5621 244 374 0 0 chr1 216009293 216009384 -66184280 + MIR SINE MIR 66 156 -106 254 227 165 0 chr1 216009585 216009682 -66183982 - L1ME4a LINE L1 -712 5450 5338 437 218 9 9 chr1 216009690 216009800 -66183864 + Charlie1 DNA MER1_type 2621 2730 -31 1244 186 70 46 chr1 216010105 216010390 -66183274 + AluJo SINE Alu 1 292 -20 242 265 20 51 chr1 216011260 216011358 -66182306 - MIR SINE MIR -64 198 104 21 71 0 0 chr1 216011665 216011707 -66181957 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr1 216013277 216013313 -66180351 + AT_rich Low_complexity Low_complexity 1 36 0 909 342 84 42 chr1 216013978 216014429 -66179235 - L2 LINE L2 -1195 2119 1688 2464 53 0 25 chr1 216014429 216014748 -66178916 + AluY SINE Alu 1 311 0 909 342 84 42 chr1 216014748 216015266 -66178398 - L2 LINE L2 -1626 1688 1109 207 148 56 19 chr1 216015332 216015386 -66178278 + A-rich Low_complexity Low_complexity 5 60 0 307 303 49 31 chr1 216015857 216016019 -66177645 - L3b LINE CR1 -180 1403 1239 21 36 0 0 chr1 216016044 216016072 -66177592 + AT_rich Low_complexity Low_complexity 1 28 0 1082 136 17 34 chr1 216016947 216017123 -66176541 - AluSg/x SINE Alu -2 310 138 685 173 16 16 chr1 216017127 216017254 -66176410 + Charlie4 DNA MER1_type 1833 1959 -2 22 35 0 0 chr1 216018350 216018379 -66175285 + AT_rich Low_complexity Low_complexity 1 29 0 254 328 67 8 chr1 216018452 216018571 -66175093 + MIR SINE MIR 19 144 -64 2072 127 3 3 chr1 216019025 216019324 -66174340 - AluSx SINE Alu -13 299 1 1866 176 33 41 chr1 216019453 216019846 -66173818 + MLT1B LTR MaLR 1 390 0 386 321 93 12 chr1 216020086 216020248 -66173416 + MIR SINE MIR 82 256 -6 580 38 2 10 chr1 216021530 216021622 -66172042 - L1P3 LINE L1 -470 5684 5592 1264 39 0 0 chr1 216021622 216021776 -66171888 + L1PA4 LINE L1 5996 6150 -5 350 132 0 0 chr1 216021864 216021917 -66171747 + Alu SINE Alu 1 53 -249 423 134 15 0 chr1 216021926 216021993 -66171671 + AluS SINE Alu 17 84 -229 1776 140 18 0 chr1 216021931 216022216 -66171448 + AluSx SINE Alu 23 312 0 388 294 142 15 chr1 216022298 216022502 -66171162 - MIR SINE MIR 0 262 33 24 0 0 0 chr1 216023363 216023387 -66170277 + AT_rich Low_complexity Low_complexity 1 24 0 886 194 66 0 chr1 216023409 216023605 -66170059 - L1MD3 LINE L1 0 7995 7787 592 261 91 30 chr1 216023618 216023990 -66169674 - L1MEc LINE L1 -4082 2314 1920 29 84 0 0 chr1 216024068 216024139 -66169525 + AT_rich Low_complexity Low_complexity 1 71 0 270 0 0 0 chr1 216024339 216024369 -66169295 + (TG)n Simple_repeat Simple_repeat 2 31 0 324 70 0 0 chr1 216025704 216025747 -66167917 + (CA)n Simple_repeat Simple_repeat 2 44 0 434 411 7 20 chr1 216026171 216026463 -66167201 - L2 LINE L2 0 3272 2985 397 274 29 96 chr1 216026471 216026892 -66166772 + L2 LINE L2 2789 3313 0 285 235 51 51 chr1 216026913 216027011 -66166653 - L2 LINE L2 -339 2933 2836 449 226 143 52 chr1 216027048 216027278 -66166386 - MER112 DNA MER1_type -7 253 3 272 260 104 0 chr1 216027503 216027580 -66166084 + L2 LINE L2 3228 3312 -1 186 313 0 60 chr1 216027786 216027853 -66165811 + L2 LINE L2 3185 3247 -25 610 249 189 34 chr1 216029071 216029336 -66164328 - L2 LINE L2 0 3313 3008 1074 213 34 86 chr1 216029392 216029777 -66163887 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr1 216030235 216030259 -66163405 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 216032097 216032118 -66161546 + AT_rich Low_complexity Low_complexity 1 21 0 274 198 99 20 chr1 216032384 216032395 -66161269 - L1MA10 LINE L1 -1 6333 6323 868 227 132 6 chr1 216032395 216032738 -66160926 - L1ME3 LINE L1 -6 6157 5756 632 223 35 150 chr1 216032748 216033375 -66160289 - L1ME3 LINE L1 -1249 4897 4343 1388 162 0 9 chr1 216033375 216033603 -66160061 - AluSg/x SINE Alu -16 296 71 21 36 0 0 chr1 216033620 216033648 -66160016 + AT_rich Low_complexity Low_complexity 1 28 0 377 339 16 37 chr1 216033746 216033935 -66159729 - L2 LINE L2 -219 3053 2869 256 114 34 23 chr1 216034073 216034161 -66159503 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 26 30 0 0 chr1 216034262 216034295 -66159369 + AT_rich Low_complexity Low_complexity 1 33 0 457 73 46 61 chr1 216034295 216034557 -66159107 + (TATAA)n Simple_repeat Simple_repeat 1 258 0 25 0 0 0 chr1 216034557 216034582 -66159082 + AT_rich Low_complexity Low_complexity 1 25 0 6678 64 18 0 chr1 216034591 216035565 -66158099 - L1PA6 LINE L1 -7 6147 5174 261 57 0 0 chr1 216035887 216035922 -66157742 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 345 57 57 chr1 216036685 216036874 -66156790 + MIR3 SINE MIR 8 189 -62 229 119 95 0 chr1 216037092 216037134 -66156530 - MLT2B1 LTR ERVL 0 520 475 206 157 59 0 chr1 216037185 216037236 -66156428 + (TTAA)n Simple_repeat Simple_repeat 4 57 0 1587 237 90 10 chr1 216037236 216037646 -66156018 - MLT2B1 LTR ERVL -77 443 1 42 57 0 0 chr1 216038929 216038999 -66154665 + AT_rich Low_complexity Low_complexity 1 70 0 258 301 62 0 chr1 216039044 216039157 -66154507 - MIR SINE MIR -46 216 97 1962 128 14 3 chr1 216039205 216039493 -66154171 - AluSx SINE Alu -21 291 1 749 184 8 0 chr1 216040089 216040214 -66153450 - FLAM_A SINE Alu -6 127 2 5542 150 37 17 chr1 216040332 216040743 -66152921 - L1MA6 LINE L1 0 6300 5899 2057 106 7 16 chr1 216040743 216041046 -66152618 - AluSq SINE Alu -13 300 1 5542 150 37 17 chr1 216041046 216041627 -66152037 - L1MA6 LINE L1 -401 5899 5284 254 29 29 0 chr1 216041627 216041662 -66152002 + (TTA)n Simple_repeat Simple_repeat 2 37 0 5542 150 37 17 chr1 216041662 216041690 -66151974 - L1MA6 LINE L1 -1016 5284 5258 21 0 0 0 chr1 216041763 216041784 -66151880 + AT_rich Low_complexity Low_complexity 1 21 0 1238 176 132 37 chr1 216041792 216042065 -66151599 + AluJo SINE Alu 1 299 -13 190 56 56 0 chr1 216042065 216042101 -66151563 + (TA)n Simple_repeat Simple_repeat 2 39 0 421 314 111 10 chr1 216043334 216043541 -66150123 + MIR SINE MIR 22 249 -13 7357 226 26 23 chr1 216043878 216044021 -66149643 - L1M4 LINE L1 -1194 4952 4811 180 77 0 0 chr1 216044021 216044047 -66149617 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 7357 226 26 23 chr1 216044047 216045050 -66148614 - L1M4 LINE L1 -1335 4811 3796 2097 107 10 13 chr1 216045050 216045359 -66148305 - AluSx SINE Alu -4 308 1 7357 226 26 23 chr1 216045359 216046237 -66147427 - L1M4 LINE L1 -2350 3796 2922 310 328 121 23 chr1 216048456 216048833 -66144831 - L2 LINE L2 -206 3066 2645 213 299 26 13 chr1 216048842 216048919 -66144745 - L2 LINE L2 -1605 1709 1632 210 306 50 44 chr1 216048928 216049088 -66144576 - L2 LINE L2 -2658 656 496 376 287 220 7 chr1 216051971 216052121 -66141543 - MER5A DNA MER1_type 0 189 8 188 233 0 0 chr1 216052698 216052741 -66140923 - MIR SINE MIR -207 55 13 330 229 307 7 chr1 216054188 216054328 -66139336 + MIR SINE MIR 81 262 0 258 32 0 0 chr1 216054687 216054718 -66138946 + (A)n Simple_repeat Simple_repeat 1 31 0 269 171 29 0 chr1 216055083 216055153 -66138511 + (TA)n Simple_repeat Simple_repeat 2 73 0 216 227 17 0 chr1 216055169 216055345 -66138319 + (TA)n Simple_repeat Simple_repeat 1 179 0 23 78 0 0 chr1 216055985 216056036 -66137628 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr1 216056145 216056188 -66137476 + AT_rich Low_complexity Low_complexity 1 43 0 729 253 67 6 chr1 216056464 216056642 -66137022 + MIR SINE MIR 3 191 -71 219 109 73 36 chr1 216056767 216056822 -66136842 + T-rich Low_complexity Low_complexity 6 62 0 1412 40 17 0 chr1 216056827 216057001 -66136663 - L1PA5 LINE L1 -6 6148 5972 547 243 216 11 chr1 216057419 216057600 -66136064 + MER20 DNA MER1_type 1 218 -1 22 0 0 0 chr1 216058615 216058637 -66135027 + AT_rich Low_complexity Low_complexity 1 22 0 219 402 41 0 chr1 216058870 216058967 -66134697 - L2 LINE L2 -35 3237 3137 343 286 150 0 chr1 216059003 216059136 -66134528 + MIR SINE MIR 22 174 -88 270 373 89 40 chr1 216059720 216059967 -66133697 - L2 LINE L2 -680 2634 2376 188 338 78 7 chr1 216060027 216060169 -66133495 - L2 LINE L2 -945 2369 2218 24 32 0 0 chr1 216061159 216061190 -66132474 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr1 216061481 216061504 -66132160 + AT_rich Low_complexity Low_complexity 1 23 0 1659 167 0 50 chr1 216061576 216061893 -66131771 + AluJb SINE Alu 1 301 -11 198 0 0 0 chr1 216062256 216062278 -66131386 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 554 274 106 19 chr1 216062640 216062974 -66130690 + L1ME LINE L1 784 1147 -4923 569 263 21 63 chr1 216063111 216063396 -66130268 + L1M4 LINE L1 4701 4973 -1173 240 286 123 47 chr1 216063909 216064080 -66129584 - MER5A DNA MER1_type -5 184 1 317 115 58 0 chr1 216065678 216065730 -66127934 + L2 LINE L2 3259 3313 0 270 381 24 24 chr1 216066255 216066423 -66127241 + MER5A DNA MER1_type 12 179 -10 231 259 17 0 chr1 216066763 216066821 -66126843 + CT-rich Low_complexity Low_complexity 3 61 0 528 316 88 18 chr1 216066893 216067121 -66126543 + MIR SINE MIR 19 262 0 222 271 68 68 chr1 216067216 216067349 -66126315 - L2 LINE L2 -49 3264 3132 528 214 75 63 chr1 216067527 216067555 -66126109 - MER91B DNA MER1_type -28 162 136 2232 111 3 0 chr1 216067555 216067862 -66125802 + AluSc SINE Alu 1 308 -1 528 214 75 63 chr1 216067862 216067992 -66125672 - MER91B DNA MER1_type -54 136 2 25 75 0 0 chr1 216068075 216068128 -66125536 + AT_rich Low_complexity Low_complexity 1 53 0 6924 123 21 8 chr1 216068143 216069612 -66124052 - L1MA1 LINE L1 0 6302 4817 1951 126 40 3 chr1 216070629 216070930 -66122734 + AluSx SINE Alu 1 312 0 357 297 40 0 chr1 216072436 216072537 -66121127 - L2 LINE L2 0 3272 3168 504 322 57 17 chr1 216072762 216072939 -66120725 + MIR SINE MIR 14 197 -65 212 171 66 13 chr1 216072941 216073017 -66120647 + (TA)n Simple_repeat Simple_repeat 1 80 0 279 273 0 0 chr1 216073185 216073251 -66120413 + MIR SINE MIR 197 262 0 367 335 50 19 chr1 216074283 216074444 -66119220 + MIR3 SINE MIR 32 197 -11 2228 128 0 0 chr1 216074478 216074790 -66118874 - AluSx SINE Alu 0 312 1 1364 180 0 0 chr1 216074792 216075031 -66118633 - L1PA16 LINE L1 -9 6157 5919 185 171 0 29 chr1 216075072 216075107 -66118557 - MIR3 SINE MIR -54 154 121 374 298 163 52 chr1 216075359 216075611 -66118053 - L2 LINE L2 0 3313 3034 24 32 0 0 chr1 216075612 216075643 -66118021 + AT_rich Low_complexity Low_complexity 1 31 0 966 244 139 58 chr1 216075893 216076361 -66117303 - L2 LINE L2 0 3313 2808 687 275 34 34 chr1 216077134 216077367 -66116297 + MIR SINE MIR 27 259 -3 278 336 150 0 chr1 216078357 216078470 -66115194 + L2 LINE L2 3143 3272 0 1973 181 11 14 chr1 216078923 216079271 -66114393 - MER7A DNA MER2_type -1 345 1 1541 105 19 19 chr1 216079287 216079545 -66114119 + HERVH LTR ERV1 7441 7698 -15 1479 143 31 33 chr1 216079546 216079868 -66113796 + LTR7 LTR ERV1 48 412 -38 195 129 0 0 chr1 216079868 216079899 -66113765 + (A)n Simple_repeat Simple_repeat 1 31 0 194 359 170 5 chr1 216080161 216080373 -66113291 + L3b LINE CR1 1249 1495 -88 3153 118 47 23 chr1 216080410 216080925 -66112739 + MER1A DNA MER1_type 1 527 0 2235 112 0 3 chr1 216081841 216082136 -66111528 - AluSq SINE Alu -19 294 1 213 360 135 6 chr1 216082172 216082350 -66111314 - L3 LINE CR1 -91 1486 1286 216 0 0 0 chr1 216082680 216082704 -66110960 + (CA)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr1 216084031 216084072 -66109592 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 216084376 216084397 -66109267 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 216085001 216085033 -66108631 + AT_rich Low_complexity Low_complexity 1 32 0 25 65 0 0 chr1 216085298 216085344 -66108320 + AT_rich Low_complexity Low_complexity 1 46 0 291 320 72 22 chr1 216085565 216085746 -66107918 + L1ME3A LINE L1 5695 5884 -286 2660 39 0 3 chr1 216085945 216086255 -66107409 - AluY SINE Alu -2 309 1 2336 99 3 0 chr1 216086360 216086663 -66107001 + AluSp SINE Alu 1 304 -9 280 279 0 48 chr1 216086786 216086890 -66106774 - L1ME LINE L1 -452 5669 5571 29 47 0 0 chr1 216086984 216087027 -66106637 + AT_rich Low_complexity Low_complexity 1 43 0 199 268 0 18 chr1 216087467 216087523 -66106141 + MIR SINE MIR 103 157 -105 352 171 26 0 chr1 216087877 216087953 -66105711 + MER103 DNA DNA 8 85 -81 3255 102 30 35 chr1 216088597 216088694 -66104970 - L1MC1 LINE L1 -11 6322 6226 2128 203 19 51 chr1 216088694 216089222 -66104442 - MLT2B2 LTR ERVL -4 511 1 3255 102 30 35 chr1 216089222 216089690 -66103974 - L1MC1 LINE L1 -107 6226 5760 228 239 23 0 chr1 216089713 216089801 -66103863 - L1MC4 LINE L1 -1339 6703 6614 228 131 49 16 chr1 216089756 216089817 -66103847 + L1MCa LINE L1 2006 2068 -4358 294 289 122 6 chr1 216089930 216090110 -66103554 + HAL1b LINE L1 711 911 -437 235 213 27 27 chr1 216090352 216090427 -66103237 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 363 305 47 16 chr1 216090427 216090617 -66103047 + HAL1b LINE L1 1153 1348 0 23 78 0 0 chr1 216090688 216090739 -66102925 + AT_rich Low_complexity Low_complexity 1 51 0 207 88 0 0 chr1 216091054 216091088 -66102576 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 882 212 0 0 chr1 216091088 216091234 -66102430 - AluJo SINE Alu -19 283 138 632 193 8 8 chr1 216091252 216091371 -66102293 - AluJo SINE Alu -182 130 12 1827 198 88 27 chr1 216091371 216091816 -66101848 - LTR2B LTR ERV1 -18 472 1 44904 186 6 9 chr1 216091818 216099656 -66094008 - HERVE LTR ERV1 -2 7811 1 1945 189 94 26 chr1 216099656 216100115 -66093549 - LTR2B LTR ERV1 0 490 1 248 228 53 0 chr1 216100115 216100163 -66093501 - AluSg/x SINE Alu -130 172 122 212 357 88 48 chr1 216100736 216101313 -66092351 + L2 LINE L2 1219 1818 -1496 260 343 134 0 chr1 216101352 216101553 -66092111 + L2 LINE L2 1940 2167 -1147 859 215 0 6 chr1 216101553 216101716 -66091948 - AluJb SINE Alu -11 301 140 1614 171 71 0 chr1 216101771 216102051 -66091613 + AluJb SINE Alu 5 304 -8 453 358 29 5 chr1 216102053 216102257 -66091407 + L2 LINE L2 2186 2394 -920 503 291 26 7 chr1 216102787 216102938 -66090726 + L2 LINE L2 3158 3311 -2 1246 187 23 53 chr1 216105339 216105638 -66088026 + MLT2D LTR ERVL 123 412 -2 458 290 90 25 chr1 216106156 216106356 -66087308 + MIR SINE MIR 20 232 -30 188 198 99 49 chr1 216106525 216106606 -66087058 - MIR SINE MIR -67 141 57 249 316 88 15 chr1 216106623 216106759 -66086905 + MIR SINE MIR 3 148 -114 242 180 15 53 chr1 216106761 216107103 -66086561 + AluJb SINE Alu 1 309 0 201 195 0 0 chr1 216108221 216108262 -66085402 + (CA)n Simple_repeat Simple_repeat 2 42 0 369 0 0 0 chr1 216108499 216108540 -66085124 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2235 114 0 16 chr1 216109265 216109582 -66084082 - AluSx SINE Alu 0 312 1 21 57 0 0 chr1 216109891 216109926 -66083738 + AT_rich Low_complexity Low_complexity 1 35 0 286 311 115 40 chr1 216110717 216110868 -66082796 - MIR3 SINE MIR -64 144 6 204 40 0 0 chr1 216111425 216111450 -66082214 + (TA)n Simple_repeat Simple_repeat 1 25 0 295 330 117 48 chr1 216111984 216112396 -66081268 - L2 LINE L2 -1177 2137 1698 217 139 83 14 chr1 216112464 216112536 -66081128 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 209 283 0 0 chr1 216113341 216113394 -66080270 + L2 LINE L2 3179 3231 -41 225 0 0 0 chr1 216114235 216114260 -66079404 + (GA)n Simple_repeat Simple_repeat 2 26 0 184 326 34 11 chr1 216114746 216114835 -66078829 + MIR SINE MIR 53 143 -119 279 341 44 52 chr1 216115081 216115216 -66078448 - L2 LINE L2 -20 3252 3119 31 58 0 0 chr1 216116260 216116312 -66077352 + AT_rich Low_complexity Low_complexity 1 52 0 189 0 0 0 chr1 216116474 216116495 -66077169 + (A)n Simple_repeat Simple_repeat 1 21 0 1630 165 34 70 chr1 216117450 216117807 -66075857 + MER2 DNA MER2_type 1 344 0 977 75 0 22 chr1 216117978 216118112 -66075552 + AluY SINE Alu 169 299 -12 241 364 40 20 chr1 216118441 216118592 -66075072 - MIR SINE MIR -52 210 57 256 306 138 19 chr1 216118813 216118973 -66074691 + MIR SINE MIR 74 252 -10 21 0 0 0 chr1 216119455 216119476 -66074188 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 216119665 216119693 -66073971 + AT_rich Low_complexity Low_complexity 1 28 0 218 374 36 14 chr1 216120825 216120964 -66072700 - L2 LINE L2 -540 2774 2633 640 255 96 59 chr1 216121680 216122002 -66071662 - MER46C DNA MER2_type -1 337 4 943 300 67 74 chr1 216122118 216122790 -66070874 - L2 LINE L2 -283 2989 2316 758 235 44 64 chr1 216122826 216123077 -66070587 - MIR SINE MIR -8 254 9 188 256 12 98 chr1 216123410 216123492 -66070172 + L2 LINE L2 3183 3257 -15 22 0 0 0 chr1 216124857 216124879 -66068785 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 216125203 216125224 -66068440 + AT_rich Low_complexity Low_complexity 1 21 0 211 182 0 0 chr1 216125496 216125529 -66068135 + polypurine Low_complexity Low_complexity 3 35 0 854 64 58 17 chr1 216126227 216126400 -66067264 + GA-rich Low_complexity Low_complexity 1 180 0 341 281 123 18 chr1 216126463 216126634 -66067030 - MER97c DNA MER1_type? -9 1081 893 1283 204 4 51 chr1 216126723 216126998 -66066666 + AluJb SINE Alu 3 264 -48 23 33 0 0 chr1 216127567 216127597 -66066067 + AT_rich Low_complexity Low_complexity 1 30 0 203 56 56 0 chr1 216128449 216128485 -66065179 + A-rich Low_complexity Low_complexity 4 41 0 275 292 83 10 chr1 216128668 216128742 -66064922 - MER91A DNA MER1_type -2 194 114 374 332 35 50 chr1 216128742 216128941 -66064723 - MER91A DNA MER1_type 0 196 1 32 0 0 0 chr1 216129008 216129040 -66064624 + AT_rich Low_complexity Low_complexity 1 32 0 5686 156 31 23 chr1 216129376 216130515 -66063149 - L1MC1 LINE L1 -1 6332 5186 224 341 58 14 chr1 216130515 216130653 -66063011 + MIR SINE MIR 63 206 -56 3729 77 4 0 chr1 216131083 216131575 -66062089 + L1PA6 LINE L1 5653 6146 -8 225 108 0 0 chr1 216131666 216131703 -66061961 + (CA)n Simple_repeat Simple_repeat 2 38 0 209 179 0 0 chr1 216131837 216131876 -66061788 + (CTG)n Simple_repeat Simple_repeat 3 41 0 400 272 207 19 chr1 216131876 216132089 -66061575 - MIR SINE MIR -5 257 5 2330 75 0 26 chr1 216132716 216133021 -66060643 - AluSc SINE Alu -12 297 1 1893 159 3 10 chr1 216133481 216133795 -66059869 - AluJb SINE Alu 0 312 1 1605 109 143 4 chr1 216133887 216134153 -66059511 + AluSq SINE Alu 1 303 0 185 333 33 0 chr1 216135560 216135620 -66058044 - MIR3 SINE MIR -138 70 9 756 171 86 17 chr1 216135833 216136008 -66057656 - MER53 DNA DNA 0 189 3 381 88 0 0 chr1 216136144 216136201 -66057463 + Alu SINE Alu 244 300 -2 423 315 83 33 chr1 216137624 216137805 -66055859 + MIR SINE MIR 22 211 -51 2056 146 54 47 chr1 216138023 216138469 -66055195 + L1MA7 LINE L1 5843 6291 0 2765 163 55 28 chr1 216138817 216139345 -66054319 + MER44D DNA MER2_type 7 603 -2 2256 46 4 4 chr1 216139468 216139800 -66053864 - AluY SINE Alu 0 334 3 394 271 172 7 chr1 216139872 216140023 -66053641 + MIR SINE MIR 1 176 -86 26 50 0 0 chr1 216140160 216140200 -66053464 + AT_rich Low_complexity Low_complexity 1 40 0 617 322 105 34 chr1 216141361 216141827 -66051837 + L2 LINE L2 2808 3306 -7 197 326 125 22 chr1 216141861 216142045 -66051619 + MIR SINE MIR 14 216 -46 434 292 22 7 chr1 216142106 216142243 -66051421 - MIR SINE MIR -34 228 90 220 345 92 42 chr1 216142984 216143648 -66050016 - L2 LINE L2 -1377 1937 1241 272 304 70 50 chr1 216144811 216145012 -66048652 - L2 LINE L2 -553 2761 2557 242 152 43 0 chr1 216145326 216145372 -66048292 - L1ME4a LINE L1 -109 6012 5965 372 43 0 0 chr1 216145375 216145421 -66048243 + (TG)n Simple_repeat Simple_repeat 2 47 0 338 210 12 12 chr1 216145434 216145515 -66048149 - L1ME4a LINE L1 -218 5903 5823 29 60 0 0 chr1 216145537 216145587 -66048077 + AT_rich Low_complexity Low_complexity 1 50 0 237 280 91 0 chr1 216145609 216145741 -66047923 - L1ME4a LINE L1 -345 5776 5633 22 0 0 0 chr1 216146186 216146208 -66047456 + AT_rich Low_complexity Low_complexity 1 22 0 5678 155 17 13 chr1 216146246 216148082 -66045582 - L1MA4 LINE L1 0 6300 4465 246 169 0 121 chr1 216148201 216148284 -66045380 - L1 LINE L1 -1329 4817 4745 209 211 18 0 chr1 216149687 216149744 -66043920 + GA-rich Low_complexity Low_complexity 3 60 0 1212 237 70 44 chr1 216150071 216150526 -66043138 - MLT1C LTR MaLR 0 467 1 32 0 0 0 chr1 216151077 216151109 -66042555 + AT_rich Low_complexity Low_complexity 1 32 0 1458 112 0 0 chr1 216151278 216151474 -66042190 + AluSg/x SINE Alu 85 280 -32 371 281 26 9 chr1 216152490 216152604 -66041060 - MIR SINE MIR -48 214 99 284 381 58 0 chr1 216153043 216153198 -66040466 + L2 LINE L2 3108 3271 -42 292 280 0 21 chr1 216153305 216153398 -66040266 + T-rich Low_complexity Low_complexity 5 95 0 831 231 109 13 chr1 216153413 216153642 -66040022 - MIR SINE MIR -10 252 2 269 355 79 25 chr1 216155467 216155670 -66037994 + L3 LINE CR1 1293 1506 -71 1129 248 44 81 chr1 216155694 216156149 -66037515 - LTR16C LTR ERVL 0 491 54 2289 57 30 3 chr1 216156920 216157220 -66036444 - AluY SINE Alu -3 308 1 1102 119 5 5 chr1 216158530 216158715 -66034949 - L1MB3 LINE L1 -3 6180 5996 299 214 27 27 chr1 216158742 216158854 -66034810 + L1M4 LINE L1 4616 4727 -1419 347 318 38 0 chr1 216159037 216159169 -66034495 + L1M4 LINE L1 4993 5129 -1017 264 330 43 9 chr1 216159296 216159411 -66034253 + MIR SINE MIR 84 202 -60 276 30 0 0 chr1 216159653 216159686 -66033978 + (TG)n Simple_repeat Simple_repeat 2 34 0 2367 82 0 19 chr1 216159778 216160095 -66033569 + AluY SINE Alu 1 311 0 450 330 21 33 chr1 216160731 216160944 -66032720 + MIR SINE MIR 2 214 -48 284 267 81 0 chr1 216161732 216161818 -66031846 - L2 LINE L2 0 3313 3221 211 380 107 0 chr1 216162284 216162405 -66031259 - L2 LINE L2 0 3313 3180 372 244 93 42 chr1 216163627 216163820 -66029844 - MIR SINE MIR 0 262 60 29 0 0 0 chr1 216165283 216165312 -66028352 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr1 216165788 216165822 -66027842 + AT_rich Low_complexity Low_complexity 1 34 0 200 229 0 16 chr1 216165901 216165962 -66027702 + (TA)n Simple_repeat Simple_repeat 1 60 0 28 0 0 0 chr1 216166084 216166112 -66027552 + AT_rich Low_complexity Low_complexity 1 28 0 2134 107 0 0 chr1 216166112 216166401 -66027263 - AluSg SINE Alu -21 289 1 912 258 47 47 chr1 216166918 216167344 -66026320 - L2 LINE L2 -25 3288 2863 2081 258 65 17 chr1 216168314 216169521 -66024143 + L1MC4 LINE L1 6476 7902 -140 25 51 0 0 chr1 216169718 216169757 -66023907 + AT_rich Low_complexity Low_complexity 1 39 0 1018 274 67 49 chr1 216170052 216170501 -66023163 + LTR16A1 LTR ERVL 1 457 0 278 290 69 15 chr1 216170671 216170802 -66022862 - L3 LINE CR1 -538 1039 902 251 317 99 0 chr1 216170820 216170921 -66022743 + L3 LINE CR1 766 876 -701 246 330 53 0 chr1 216171340 216171434 -66022230 + L3 LINE CR1 1360 1458 -119 277 347 74 58 chr1 216172543 216172854 -66020810 + L2 LINE L2 2660 2975 -339 351 0 0 0 chr1 216173303 216173342 -66020322 + (CA)n Simple_repeat Simple_repeat 1 39 0 464 300 17 88 chr1 216174176 216174328 -66019336 - L2 LINE L2 -25 3288 3166 189 0 0 0 chr1 216174328 216174349 -66019315 + (TAA)n Simple_repeat Simple_repeat 2 22 0 464 300 17 88 chr1 216174349 216174493 -66019171 - L2 LINE L2 -147 3166 3013 203 263 0 35 chr1 216174709 216174766 -66018898 + MIR3 SINE MIR 147 201 -7 727 308 48 8 chr1 216175282 216175532 -66018132 - MIR SINE MIR 0 262 3 1993 130 37 0 chr1 216175717 216176017 -66017647 - AluSq SINE Alu -2 311 1 383 251 153 79 chr1 216177018 216177233 -66016431 + MIR SINE MIR 28 258 -4 380 255 10 10 chr1 216178775 216178873 -66014791 + MIR SINE MIR 163 260 -2 218 317 64 19 chr1 216179156 216179273 -66014391 - MIR SINE MIR -49 159 37 1521 195 57 24 chr1 216179488 216179821 -66013843 + MLT1D LTR MaLR 3 346 -159 4843 87 6 1 chr1 216179851 216180508 -66013156 + PABL_A LTR ERV1 1 660 0 13494 68 119 99 chr1 216180508 216182962 -66010702 + PABL_A-int LTR ERV1 1 2503 -2512 2682 131 35 2 chr1 216182962 216183390 -66010274 - LTR19B LTR ERV1 0 580 139 3914 92 49 4 chr1 216183390 216183945 -66009719 - LTR12 LTR ERV1 -133 581 2 905 147 0 0 chr1 216183945 216184088 -66009576 - LTR19B LTR ERV1 -437 143 1 18990 66 13 2 chr1 216184088 216186578 -66007086 + PABL_A-int LTR ERV1 2499 5015 0 4923 89 6 0 chr1 216186582 216187234 -66006430 + PABL_A LTR ERV1 5 660 0 594 203 0 16 chr1 216187236 216187364 -66006300 + MLT1D LTR MaLR 380 505 0 517 206 0 28 chr1 216187742 216187849 -66005815 - MIR SINE MIR -45 217 114 26 0 0 0 chr1 216188474 216188500 -66005164 + AT_rich Low_complexity Low_complexity 1 26 0 636 212 0 8 chr1 216189024 216189156 -66004508 - FLAM_A SINE Alu 0 142 12 204 67 0 0 chr1 216189866 216189896 -66003768 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1850 240 49 28 chr1 216190873 216191381 -66002283 - LTR40a LTR ERVL 0 519 1 228 186 17 34 chr1 216191381 216191440 -66002224 - L1MC4 LINE L1 -1333 6709 6652 304 244 0 43 chr1 216191442 216191557 -66002107 + (TA)n Simple_repeat Simple_repeat 1 110 0 22 0 0 0 chr1 216191804 216191826 -66001838 + AT_rich Low_complexity Low_complexity 1 22 0 253 247 101 22 chr1 216193043 216193132 -66000532 + MIR SINE MIR 91 186 -76 332 297 42 25 chr1 216193384 216193502 -66000162 - L2 LINE L2 -1 3312 3193 28 48 0 0 chr1 216193758 216193800 -65999864 + AT_rich Low_complexity Low_complexity 1 42 0 1008 157 7 0 chr1 216193801 216193954 -65999710 - FRAM SINE Alu -23 153 1 1841 244 8 38 chr1 216194227 216194555 -65999109 + L1 LINE L1 3397 3706 -2440 1828 121 4 0 chr1 216194555 216194835 -65998829 + L1PA14 LINE L1 5880 6160 -1 1841 244 8 38 chr1 216194835 216195011 -65998653 + L1 LINE L1 3706 3886 -2260 381 273 154 21 chr1 216195357 216195500 -65998164 + MIR SINE MIR 8 169 -93 582 350 11 0 chr1 216196376 216196562 -65997102 + MIR SINE MIR 26 213 -49 215 323 68 36 chr1 216196662 216196828 -65996836 - MIR SINE MIR -52 156 19 14598 216 18 11 chr1 216197101 216200558 -65993106 + L1M LINE L1 1951 5422 -743 725 100 0 0 chr1 216200546 216200646 -65993018 + L1PA15 LINE L1 5516 5615 -550 * 6596 69 17 5 chr1 216200646 216201834 -65991830 + L1PA7 LINE L1 4954 6152 -2 3679 114 9 4 chr1 216201854 216202415 -65991249 + L1PA15 LINE L1 5602 6165 0 29 28 0 0 chr1 216202446 216202482 -65991182 + AT_rich Low_complexity Low_complexity 1 36 0 289 183 98 0 chr1 216203802 216203884 -65989780 - LTR33 LTR ERVL 0 521 432 6646 220 30 98 chr1 216203884 216206710 -65986954 + L1M2a LINE L1 8 2697 -4471 1183 123 0 0 chr1 216206710 216206881 -65986783 + AluSp SINE Alu 135 305 -8 6646 220 30 98 chr1 216206881 216207163 -65986501 + L1M2a LINE L1 2697 2997 -4171 270 0 0 0 chr1 216207709 216207739 -65985925 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 184 339 0 16 chr1 216208672 216208734 -65984930 + MIR3 SINE MIR 121 181 -27 2997 177 11 18 chr1 216208756 216209309 -65984355 + MER44D DNA MER2_type 1 604 -1 1976 163 10 66 chr1 216212486 216212901 -65980763 - MLT1B LTR MaLR -2 426 1 297 183 0 0 chr1 216213253 216213313 -65980351 + (TG)n Simple_repeat Simple_repeat 1 60 0 1132 58 0 32 chr1 216213998 216214154 -65979510 + L1PA6 LINE L1 5999 6149 -5 1424 295 26 3 chr1 216215062 216215445 -65978219 - MLT1H1 LTR MaLR -163 392 1 27 0 0 0 chr1 216215602 216215629 -65978035 + AT_rich Low_complexity Low_complexity 1 27 0 196 364 55 0 chr1 216215669 216215724 -65977940 - L3b LINE CR1 -12 1571 1514 191 313 145 12 chr1 216216027 216216110 -65977554 - L2 LINE L2 -1802 1512 1419 2046 101 10 29 chr1 216217476 216217782 -65975882 - AluSg SINE Alu -10 300 1 1322 277 90 35 chr1 216217987 216218499 -65975165 + MLT1F LTR MaLR 3 542 0 39 68 0 0 chr1 216218590 216218664 -65975000 + AT_rich Low_complexity Low_complexity 1 74 0 24 67 0 0 chr1 216218817 216218862 -65974802 + AT_rich Low_complexity Low_complexity 1 45 0 180 0 0 0 chr1 216218951 216218971 -65974693 + (GA)n Simple_repeat Simple_repeat 2 21 0 528 300 0 28 chr1 216219008 216219188 -65974476 + MER5B DNA MER1_type 4 178 0 30 0 0 0 chr1 216219563 216219593 -65974071 + AT_rich Low_complexity Low_complexity 1 30 0 261 269 0 11 chr1 216219927 216220020 -65973644 + L1ME LINE L1 5317 5408 -754 204 143 29 0 chr1 216220130 216220165 -65973499 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 239 149 64 0 chr1 216220169 216220216 -65973448 + L1ME LINE L1 5777 5826 -295 446 191 11 0 chr1 216220282 216220371 -65973293 + MER89 LTR ERV1 1 90 -469 1191 65 0 24 chr1 216220434 216220682 -65972982 + (TTC)n Simple_repeat Simple_repeat 1 242 0 1758 158 27 0 chr1 216220700 216220992 -65972672 + MER89 LTR ERV1 260 559 0 204 253 0 0 chr1 216222085 216222160 -65971504 + (TA)n Simple_repeat Simple_repeat 2 76 0 2108 181 38 73 chr1 216223102 216223676 -65969988 - MLT2B3 LTR ERVL 0 554 1 22 0 0 0 chr1 216226087 216226109 -65967555 + AT_rich Low_complexity Low_complexity 1 22 0 3964 173 31 38 chr1 216226479 216227441 -65966223 + L1MB1 LINE L1 5137 6101 -67 34 0 0 0 chr1 216227470 216227504 -65966160 + AT_rich Low_complexity Low_complexity 1 34 0 192 143 54 0 chr1 216227994 216228050 -65965614 + (TA)n Simple_repeat Simple_repeat 2 60 0 1609 201 32 0 chr1 216228055 216228364 -65965300 + MER2 DNA MER2_type 27 345 0 252 111 0 0 chr1 216228366 216228411 -65965253 + (TG)n Simple_repeat Simple_repeat 2 46 0 201 167 0 0 chr1 216228861 216228897 -65964767 + A-rich Low_complexity Low_complexity 1 36 0 199 325 106 8 chr1 216229046 216229169 -65964495 + MIR SINE MIR 12 146 -116 22 56 0 0 chr1 216229524 216229560 -65964104 + AT_rich Low_complexity Low_complexity 1 36 0 2298 97 0 0 chr1 216230037 216230336 -65963328 + AluY SINE Alu 13 311 0 1038 99 7 0 chr1 216230687 216230839 -65962825 - LTR19A LTR ERV1 0 486 334 * 2697 112 11 47 chr1 216230836 216231376 -65962288 - LTR19C LTR ERV1 -187 393 1 183 314 14 79 chr1 216231888 216232028 -65961636 - MIR SINE MIR -50 212 82 3571 273 66 20 chr1 216233789 216233822 -65959842 - L1ME2 LINE L1 -1 6958 6928 1468 176 77 15 chr1 216233822 216234095 -65959569 - AluJb SINE Alu -22 290 1 3571 273 66 20 chr1 216234095 216236460 -65957204 - L1ME2 LINE L1 -31 6928 4447 596 279 109 48 chr1 216236485 216236861 -65956803 - L1ME2 LINE L1 -5967 456 58 383 213 25 0 chr1 216237024 216237104 -65956560 + Tigger5 DNA MER2_type 1 82 -2241 * 1050 198 41 25 chr1 216237090 216237333 -65956331 + Tigger5 DNA MER2_type 2077 2323 0 183 209 93 0 chr1 216238321 216238364 -65955300 - L2 LINE L2 0 3313 3267 240 271 0 0 chr1 216239000 216239059 -65954605 + CT-rich Low_complexity Low_complexity 2 60 0 2086 195 49 5 chr1 216239073 216239478 -65954186 - MSTB LTR MaLR -1 425 3 1532 139 0 0 chr1 216242961 216243176 -65950488 + AluSg/x SINE Alu 82 296 -14 683 272 18 59 chr1 216244316 216244588 -65949076 + MIR SINE MIR 2 262 0 674 298 28 0 chr1 216246273 216246451 -65947213 - MIR SINE MIR -30 232 50 490 316 37 11 chr1 216248042 216248229 -65945435 + MIR SINE MIR 5 196 -66 2422 74 0 13 chr1 216248342 216248693 -65944971 - AluSc SINE Alu 0 347 1 317 336 24 32 chr1 216249032 216249157 -65944507 - MER5B DNA MER1_type -5 173 50 21 0 0 0 chr1 216249179 216249200 -65944464 + AT_rich Low_complexity Low_complexity 1 21 0 901 104 0 49 chr1 216249200 216249363 -65944301 - L1PA13 LINE L1 -1 6162 6008 1328 97 29 38 chr1 216249383 216249621 -65944043 - AluY SINE Alu -11 300 65 4393 171 103 94 chr1 216249621 216251363 -65942301 - pTR5 LTR ERV1 -9 2429 73 853 66 0 0 chr1 216251363 216251469 -65942195 - AluY SINE Alu -205 106 1 2578 207 32 4 chr1 216251477 216251975 -65941689 - LTR53 LTR ERVL 0 519 8 418 283 107 44 chr1 216251982 216252141 -65941523 - MLT1J2 LTR MaLR -91 359 191 23 0 0 0 chr1 216252352 216252375 -65941289 + AT_rich Low_complexity Low_complexity 1 23 0 235 0 57 0 chr1 216253650 216253685 -65939979 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 216 244 12 23 chr1 216254529 216254615 -65939049 + T-rich Low_complexity Low_complexity 5 89 0 376 339 65 60 chr1 216254703 216255323 -65938341 - L2 LINE L2 -88 3184 2564 1049 283 82 47 chr1 216258131 216258640 -65935024 - L2 LINE L2 -4 3309 2784 459 143 38 9 chr1 216258762 216258867 -65934797 + CT-rich Low_complexity Low_complexity 3 110 0 26 30 0 0 chr1 216260013 216260046 -65933618 + AT_rich Low_complexity Low_complexity 1 33 0 1953 146 0 0 chr1 216260046 216260333 -65933331 - AluSx SINE Alu -25 287 1 271 281 140 39 chr1 216261065 216261400 -65932264 - L1ME LINE L1 -240 5881 5513 34 24 0 0 chr1 216261803 216261844 -65931820 + AT_rich Low_complexity Low_complexity 1 41 0 477 320 156 38 chr1 216264313 216264771 -65928893 - L2 LINE L2 -22 3291 2783 251 28 28 0 chr1 216264826 216264862 -65928802 + (TTG)n Simple_repeat Simple_repeat 2 38 0 308 304 52 40 chr1 216264897 216265147 -65928517 - L1ME LINE L1 -4866 2081 1829 350 287 99 70 chr1 216265154 216265537 -65928127 - L1ME LINE L1 -5133 1814 1361 322 307 140 0 chr1 216266053 216266167 -65927497 - L1ME LINE L1 -5934 1013 884 993 333 137 29 chr1 216266582 216267409 -65926255 - L2 LINE L2 -344 2970 2055 3058 74 2 0 chr1 216267424 216267817 -65925847 - L1P LINE L1 -5712 434 41 1364 40 29 0 chr1 216267817 216267990 -65925674 + L1PA4 LINE L1 5978 6155 0 793 262 58 63 chr1 216268069 216268531 -65925133 - LTR40b LTR ERVL 0 462 3 613 333 37 9 chr1 216268558 216268774 -65924890 - MIR SINE MIR -6 256 35 425 342 179 29 chr1 216268830 216269356 -65924308 - L2 LINE L2 -1382 1932 1328 33 43 0 0 chr1 216269586 216269633 -65924031 + AT_rich Low_complexity Low_complexity 1 47 0 1482 172 12 0 chr1 216269668 216269912 -65923752 - AluJo SINE Alu -64 248 2 355 278 52 9 chr1 216270736 216270851 -65922813 + MLT1J LTR MaLR 29 148 -363 527 301 0 0 chr1 216270852 216270965 -65922699 + MER81 DNA DNA 2 114 0 278 305 106 89 chr1 216271086 216271135 -65922529 + L2 LINE L2 2461 2508 -806 2454 79 0 0 chr1 216271135 216271438 -65922226 - AluY SINE Alu -8 303 1 278 305 106 89 chr1 216271438 216271896 -65921768 + L2 LINE L2 2508 2977 -337 1615 266 37 7 chr1 216271918 216272434 -65921230 - MER119 DNA MER1_type 0 583 2 1000 342 56 7 chr1 216272735 216273163 -65920501 + LTR16A LTR ERVL 1 457 0 225 0 0 0 chr1 216274678 216274703 -65918961 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 6405 86 23 7 chr1 216274703 216276782 -65916882 - L1PA8 LINE L1 -11 6161 4020 474 293 131 35 chr1 216276866 216277095 -65916569 - MIR SINE MIR -7 255 5 261 274 319 19 chr1 216277252 216277409 -65916255 + MIR SINE MIR 56 259 -3 288 277 62 0 chr1 216278262 216278374 -65915290 - L3b LINE CR1 -349 1234 1116 281 315 81 38 chr1 216278622 216278857 -65914807 - L2 LINE L2 -21 3292 3048 635 337 12 16 chr1 216278915 216279167 -65914497 - MIR SINE MIR -1 261 11 235 188 14 14 chr1 216279190 216279259 -65914405 + (CATATA)n Simple_repeat Simple_repeat 5 73 0 423 275 15 23 chr1 216280794 216280925 -65912739 + L3b LINE CR1 1241 1370 -213 418 301 81 12 chr1 216281214 216281387 -65912277 + MIR SINE MIR 59 243 -19 507 316 60 56 chr1 216281742 216282191 -65911473 + HAL1 LINE L1 92 542 -1965 260 320 66 25 chr1 216282802 216282924 -65910740 - L2 LINE L2 -2 3270 3144 1931 112 0 21 chr1 216282987 216283272 -65910392 + AluSc SINE Alu 1 279 -30 1782 145 13 7 chr1 216283490 216283516 -65910148 - L1PA16 LINE L1 -5 6161 6137 2411 138 19 12 chr1 216283516 216283936 -65909728 - L1PA15 LINE L1 -5 6160 5738 1782 145 13 7 chr1 216283936 216284213 -65909451 - L1PA16 LINE L1 -29 6137 5856 502 273 16 8 chr1 216284444 216284572 -65909092 + MER5B DNA MER1_type 7 135 -43 369 330 67 16 chr1 216284660 216284854 -65908810 + HAL1 LINE L1 849 1052 -1455 252 320 62 57 chr1 216284929 216285173 -65908491 + L2 LINE L2 2829 3073 -199 2036 71 4 0 chr1 216285271 216285539 -65908125 + L1PA7 LINE L1 5883 6151 -3 2186 54 20 20 chr1 216285552 216285850 -65907814 + AluY SINE Alu 1 298 -13 377 274 77 90 chr1 216285863 216286079 -65907585 + MIR SINE MIR 21 243 -19 21 0 0 0 chr1 216287077 216287098 -65906566 + AT_rich Low_complexity Low_complexity 1 21 0 422 263 256 0 chr1 216287230 216287367 -65906297 - MER5A DNA MER1_type -14 175 4 206 241 0 0 chr1 216288638 216288692 -65904972 + T-rich Low_complexity Low_complexity 1 54 0 393 110 0 0 chr1 216288794 216288867 -65904797 + (TA)n Simple_repeat Simple_repeat 2 74 0 2362 74 0 0 chr1 216289462 216289788 -65903876 - AluY SINE Alu 0 326 1 210 222 0 0 chr1 216289945 216289999 -65903665 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1729 114 11 4 chr1 216290617 216290889 -65902775 - L1PB1 LINE L1 -8 6143 5870 209 390 73 29 chr1 216291003 216291139 -65902525 + L2 LINE L2 3118 3259 -13 2669 113 8 0 chr1 216291141 216291538 -65902126 + L1MA1 LINE L1 5903 6302 0 257 382 59 21 chr1 216292442 216292628 -65901036 - L2 LINE L2 -825 2489 2297 438 229 28 9 chr1 216293901 216294010 -65899654 - MER81 DNA DNA 0 114 4 1166 293 65 42 chr1 216294576 216295449 -65898215 - L2 LINE L2 -2 3311 2421 2032 145 0 0 chr1 216296244 216296541 -65897123 + AluSx SINE Alu 3 299 -13 237 65 0 0 chr1 216297139 216297170 -65896494 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 629 235 15 0 chr1 216297427 216297563 -65896101 - Charlie4 DNA MER1_type -6 1955 1818 1867 277 69 19 chr1 216301821 216302331 -65891333 - L1ME LINE L1 -5073 997 514 2363 127 61 19 chr1 216302331 216302742 -65890922 - MSTA LTR MaLR 0 428 1 1867 277 69 19 chr1 216302742 216302938 -65890726 - L1ME LINE L1 -5556 514 248 1356 216 70 49 chr1 216302938 216303326 -65890338 + MSTD LTR MaLR 1 396 0 1867 277 69 19 chr1 216303326 216303373 -65890291 - L1ME LINE L1 -5822 248 205 1422 205 26 39 chr1 216304450 216304840 -65888824 - L1MA10 LINE L1 -3 6331 5947 * 3441 184 30 4 chr1 216304836 216305752 -65887912 + L1MA10 LINE L1 4998 5940 -228 603 241 62 46 chr1 216307308 216307503 -65886161 - MIR SINE MIR -32 230 33 1284 294 83 37 chr1 216307642 216308310 -65885354 + L1MA6 LINE L1 358 1412 -6154 13022 188 53 24 chr1 216308316 216309768 -65883896 + L1MA6 LINE L1 2701 4109 -3610 2060 139 0 0 chr1 216309768 216310062 -65883602 - AluSq SINE Alu -19 294 1 13022 188 53 24 chr1 216310062 216313457 -65880207 + L1MA6 LINE L1 4109 7719 0 417 317 50 17 chr1 216313752 216313932 -65879732 - MIR SINE MIR -25 237 52 1999 122 0 32 chr1 216314481 216314793 -65878871 - AluSg SINE Alu -3 307 6 743 229 11 11 chr1 216314993 216315168 -65878496 + L1MC4 LINE L1 6437 6611 -1431 516 154 0 89 chr1 216315169 216315292 -65878372 - L1PA10 LINE L1 0 6168 6057 1596 64 0 0 chr1 216315341 216315544 -65878120 - L1P3 LINE L1 -465 5689 5487 306 247 20 73 chr1 216315772 216315922 -65877742 - L1MC4 LINE L1 -1275 6767 6626 9085 60 4 2 chr1 216315936 216317133 -65876531 - L1PA6 LINE L1 -3727 2419 1221 8244 55 4 1 chr1 216317132 216318218 -65875446 + L1PA6 LINE L1 2435 3523 -2623 * 12837 36 15 0 chr1 216318218 216320532 -65873132 + L1PA6 LINE L1 3819 6148 -6 419 270 7 29 chr1 216320743 216320880 -65872784 - MIR SINE MIR -38 224 91 4544 152 58 11 chr1 216321940 216322798 -65870866 - L1MC1 LINE L1 0 6333 5435 1029 145 95 5 chr1 216322929 216323129 -65870535 + L1PB1 LINE L1 5932 6149 -2 410 242 46 169 chr1 216323233 216323452 -65870212 + MIR SINE MIR 51 242 -20 1328 154 5 0 chr1 216323692 216323900 -65869764 + MER2 DNA MER2_type 2 210 -135 836 310 33 69 chr1 216324230 216324979 -65868685 + HAL1 LINE L1 458 1179 -1328 306 303 35 28 chr1 216325228 216325373 -65868291 + HAL1 LINE L1 1637 1782 -725 311 113 19 0 chr1 216326264 216326317 -65867347 + GA-rich Low_complexity Low_complexity 3 56 0 25 31 0 0 chr1 216326751 216326783 -65866881 + AT_rich Low_complexity Low_complexity 1 32 0 266 348 62 0 chr1 216327006 216327167 -65866497 - MIR SINE MIR -8 254 84 1922 167 47 59 chr1 216327283 216327320 -65866344 - MSTB1 LTR MaLR -12 420 384 203 32 65 0 chr1 216327320 216327351 -65866313 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1922 167 47 59 chr1 216327351 216327738 -65865926 - MSTB1 LTR MaLR -48 384 1 1601 234 40 27 chr1 216327884 216328285 -65865379 + L1MCa LINE L1 19 424 -6002 * 3567 230 13 84 chr1 216328263 216329507 -65864157 + L1M4 LINE L1 3383 4538 -1888 19663 166 22 15 chr1 216329513 216329841 -65863823 + L1MA1 LINE L1 12 336 -7388 1485 138 13 0 chr1 216329841 216330066 -65863598 + AluSg/x SINE Alu 70 297 -13 19663 166 22 15 chr1 216330066 216333070 -65860594 + L1MA1 LINE L1 336 3318 -4406 2236 102 7 3 chr1 216333070 216333373 -65860291 + AluSq SINE Alu 6 309 -4 19663 166 22 15 chr1 216333373 216337749 -65855915 + L1MA1 LINE L1 3318 7724 0 1737 250 45 26 chr1 216337731 216338348 -65855316 + L1M4 LINE L1 4248 4876 -1270 * 420 97 0 0 chr1 216338493 216338555 -65855109 + (TG)n Simple_repeat Simple_repeat 1 62 0 2715 6 3 3 chr1 216339529 216339840 -65853824 + AluYa5 SINE Alu 1 311 0 189 0 0 0 chr1 216340476 216340497 -65853167 + (CA)n Simple_repeat Simple_repeat 2 22 0 1932 176 29 42 chr1 216340864 216341318 -65852346 - L1MA5 LINE L1 0 6300 5853 328 286 5 141 chr1 216341318 216341510 -65852154 - L1MC/D LINE L1 -2152 5656 5491 22 0 0 0 chr1 216341910 216341932 -65851732 + AT_rich Low_complexity Low_complexity 1 22 0 1494 163 216 13 chr1 216342303 216342683 -65850981 + MSTB2 LTR MaLR 1 457 0 281 80 0 20 chr1 216342710 216342760 -65850904 + (GA)n Simple_repeat Simple_repeat 2 50 0 954 336 39 19 chr1 216342836 216343247 -65850417 + ERVL LTR ERVL 1925 2343 -3421 2432 7 0 0 chr1 216343324 216343601 -65850063 - L1PA2 LINE L1 -2 6153 5877 767 346 50 17 chr1 216343605 216344068 -65849596 + ERVL LTR ERVL 2467 2944 -2820 1087 344 24 17 chr1 216344421 216344842 -65848822 + ERVL LTR ERVL 3388 3811 -1953 408 259 0 17 chr1 216344852 216344968 -65848696 - L1MC2 LINE L1 -279 6065 5952 377 291 147 28 chr1 216345038 216345358 -65848306 + L1ME4a LINE L1 5755 6112 -9 4905 158 26 5 chr1 216345504 216346446 -65847218 - L1MA4 LINE L1 0 6300 5211 1625 271 54 6 chr1 216346564 216347099 -65846565 - L1PA15-16 LINE L1 -4004 2845 2285 296 309 10 0 chr1 216347104 216347201 -65846463 - L1PA15-16 LINE L1 -5886 963 866 4289 261 20 38 chr1 216347208 216348426 -65845238 - L1PA15-16 LINE L1 -5652 1197 1 567 221 83 0 chr1 216348425 216348570 -65845094 - L1MC2 LINE L1 -368 5976 5820 * 1894 154 28 41 chr1 216348577 216348697 -65844967 - L1MB3 LINE L1 -8 6175 6055 1830 104 12 4 chr1 216348697 216348948 -65844716 - AluSp SINE Alu -18 295 43 1894 154 28 41 chr1 216348948 216349216 -65844448 - L1MB3 LINE L1 -128 6055 5792 2726 193 40 33 chr1 216349217 216349913 -65843751 + L1MA8 LINE L1 4303 5003 -1143 * 4944 171 40 13 chr1 216349911 216350960 -65842704 + L1MA8 LINE L1 5213 6288 -3 1407 264 41 41 chr1 216351210 216351731 -65841933 - L1M4c LINE L1 -2584 3798 3275 1801 171 0 16 chr1 216351731 216352035 -65841629 - AluJo SINE Alu -13 299 1 1407 264 41 41 chr1 216352035 216352225 -65841439 - L1M4c LINE L1 -3106 3276 3087 1915 141 138 11 chr1 216352231 216352586 -65841078 - MSTA LTR MaLR 0 428 29 791 164 13 0 chr1 216352637 216352789 -65840875 - MSTA-int LTR MaLR 0 1651 1498 685 112 0 28 chr1 216352781 216352888 -65840776 - MSTA-int LTR MaLR -535 1045 942 * 756 186 0 0 chr1 216352888 216353017 -65840647 + FRAM SINE Alu 40 168 -8 185 0 0 39 chr1 216353058 216353084 -65840580 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 8395 149 12 44 chr1 216353086 216354599 -65839065 - MSTA-int LTR MaLR -114 1466 3 1705 171 141 11 chr1 216354605 216354980 -65838684 - MSTA LTR MaLR -4 424 1 1325 229 3 24 chr1 216355018 216355311 -65838353 + AluJo SINE Alu 1 287 -25 1936 247 52 16 chr1 216355330 216356131 -65837533 - L1M4c LINE L1 -3355 3027 2195 13668 202 28 9 chr1 216356132 216359359 -65834305 + L1M1 LINE L1 3507 6792 -773 1547 254 60 43 chr1 216359358 216360185 -65833479 - L1M4c LINE L1 -4520 1793 544 * 247 296 67 95 chr1 216360355 216360743 -65832921 - L1 LINE L1 -5512 791 415 22 35 0 0 chr1 216361031 216361060 -65832604 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr1 216361454 216361483 -65832181 + AT_rich Low_complexity Low_complexity 1 29 0 5611 117 11 1 chr1 216361771 216362771 -65830893 + L1PA14 LINE L1 5048 6062 -99 23 0 0 0 chr1 216362785 216362808 -65830856 + AT_rich Low_complexity Low_complexity 1 23 0 551 101 0 11 chr1 216362827 216362916 -65830748 + L1PA14 LINE L1 6073 6160 -1 225 0 0 0 chr1 216362921 216362946 -65830718 + (TG)n Simple_repeat Simple_repeat 2 26 0 466 311 43 12 chr1 216364769 216364930 -65828734 - MIR SINE MIR -57 205 40 22 0 0 0 chr1 216365264 216365286 -65828378 + AT_rich Low_complexity Low_complexity 1 22 0 25 90 0 0 chr1 216366944 216367011 -65826653 + AT_rich Low_complexity Low_complexity 1 67 0 1432 168 10 33 chr1 216367035 216367338 -65826326 + L1MA9 LINE L1 6013 6308 -4 30 0 0 0 chr1 216367836 216367866 -65825798 + AT_rich Low_complexity Low_complexity 1 30 0 304 291 90 26 chr1 216368367 216368556 -65825108 + HsTC2a DNA Tc2 43 243 -501 289 218 0 0 chr1 216368793 216368848 -65824816 + HsTC2a DNA Tc2 432 486 -256 5017 130 8 9 chr1 216368850 216369641 -65824023 - L1PA15 LINE L1 -4 6161 5372 629 285 9 5 chr1 216369666 216369887 -65823777 + HsTC2a DNA Tc2 513 734 -8 24 0 0 0 chr1 216370264 216370288 -65823376 + AT_rich Low_complexity Low_complexity 1 24 0 254 234 109 31 chr1 216370314 216370442 -65823222 - L1ME4a LINE L1 -25 6096 5959 6729 69 4 0 chr1 216371567 216372539 -65821125 - L1PA7 LINE L1 0 6154 5177 2089 61 0 182 chr1 216372539 216372963 -65820701 + L1P LINE L1 4681 5027 -1119 64 67 0 0 chr1 216373078 216373198 -65820466 + AT_rich Low_complexity Low_complexity 1 120 0 4442 182 25 11 chr1 216373652 216374924 -65818740 - L1PA16 LINE L1 -557 5608 4319 2581 119 0 70 chr1 216374924 216375012 -65818652 + L1PA16 LINE L1 5605 5698 -468 2205 91 10 3 chr1 216375012 216375310 -65818354 - AluSx SINE Alu -11 301 2 2581 119 0 70 chr1 216375310 216375676 -65817988 + L1PA16 LINE L1 5698 6027 -139 2072 83 10 13 chr1 216375825 216376125 -65817539 + AluY SINE Alu 1 299 -12 788 139 39 0 chr1 216376125 216376254 -65817410 + L1PA16 LINE L1 6029 6162 -4 346 173 118 126 chr1 216376394 216376420 -65817244 + MER92C LTR ERV1 420 445 -109 1878 132 7 36 chr1 216376420 216376723 -65816941 + AluSx SINE Alu 1 294 -18 346 173 118 126 chr1 216376723 216376823 -65816841 + MER92C LTR ERV1 445 545 -9 384 295 87 54 chr1 216377018 216377259 -65816405 + L2 LINE L2 2257 2505 -809 27 49 0 0 chr1 216378255 216378296 -65815368 + AT_rich Low_complexity Low_complexity 1 41 0 1459 131 9 0 chr1 216378451 216378673 -65814991 - AluSg/x SINE Alu -2 308 85 225 83 0 0 chr1 216378674 216378710 -65814954 - Alu SINE Alu -265 36 1 820 200 41 6 chr1 216378710 216378880 -65814784 - FRAM SINE Alu 0 176 1 234 214 0 0 chr1 216379422 216379464 -65814200 + MLT1L LTR MaLR 169 210 -405 315 0 0 0 chr1 216379934 216379969 -65813695 + (CA)n Simple_repeat Simple_repeat 1 35 0 1479 205 29 0 chr1 216379969 216380242 -65813422 + AluJo SINE Alu 4 284 -28 483 73 0 0 chr1 216380993 216381061 -65812603 + (GGAA)n Simple_repeat Simple_repeat 2 69 0 29 0 0 0 chr1 216381412 216381441 -65812223 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 216382111 216382134 -65811530 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 216382847 216382870 -65810794 + AT_rich Low_complexity Low_complexity 1 23 0 203 195 0 24 chr1 216382971 216383012 -65810652 + GA-rich Low_complexity Low_complexity 3 42 0 2126 121 50 19 chr1 216383234 216383598 -65810066 - THE1C LTR MaLR 0 375 1 328 305 51 8 chr1 216383729 216383847 -65809817 - MER5C DNA MER1_type -200 124 2 320 0 25 0 chr1 216384685 216384725 -65808939 + (TA)n Simple_repeat Simple_repeat 1 41 0 180 176 0 0 chr1 216385048 216385082 -65808582 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 219 88 0 0 chr1 216385118 216385152 -65808512 + (TG)n Simple_repeat Simple_repeat 1 34 0 395 334 167 13 chr1 216385474 216385869 -65807795 + L2 LINE L2 1761 2216 -1098 2723 87 0 6 chr1 216385870 216386236 -65807428 + THE1B LTR MaLR 1 364 0 247 367 84 38 chr1 216386553 216386790 -65806874 + L2 LINE L2 2221 2468 -846 2196 103 7 7 chr1 216387362 216387663 -65806001 - AluSx SINE Alu -11 301 1 407 298 53 103 chr1 216387804 216388123 -65805541 - L2 LINE L2 -375 2939 2637 259 152 15 15 chr1 216388708 216388774 -65804890 + CT-rich Low_complexity Low_complexity 1 66 0 24 0 0 0 chr1 216389481 216389505 -65804159 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr1 216390378 216390416 -65803248 + AT_rich Low_complexity Low_complexity 1 38 0 260 318 0 0 chr1 216390474 216390562 -65803102 - L1ME4a LINE L1 -87 6034 5947 278 242 61 30 chr1 216390579 216390711 -65802953 - L1ME4a LINE L1 -222 5899 5764 2938 157 19 25 chr1 216391268 216391785 -65801879 + MLT2B1 LTR ERVL 5 518 -2 2223 63 0 3 chr1 216392329 216392644 -65801020 - AluY SINE Alu 0 314 1 1243 61 0 0 chr1 216392903 216393051 -65800613 + AluSg SINE Alu 1 148 -162 15838 175 23 17 chr1 216393052 216397805 -65795859 - L1MA1 LINE L1 -91 7630 2713 220 26 26 26 chr1 216397805 216397843 -65795821 + (TTG)n Simple_repeat Simple_repeat 2 39 0 15838 175 23 17 chr1 216397843 216400561 -65793103 - L1MA1 LINE L1 -5008 2713 12 398 171 36 81 chr1 216401464 216401575 -65792089 - MIR SINE MIR -3 259 154 524 267 125 20 chr1 216401578 216401874 -65791790 + MER46C DNA MER2_type 11 337 -1 333 313 10 0 chr1 216401881 216401980 -65791684 - MIR SINE MIR -115 147 48 273 333 43 31 chr1 216402126 216402288 -65791376 + MIR SINE MIR 53 216 -46 348 265 53 33 chr1 216402476 216402627 -65791037 - MER103 DNA DNA -5 161 8 771 233 44 0 chr1 216403051 216403231 -65790433 + MLT2B1 LTR ERVL 12 199 -321 1643 191 7 0 chr1 216403256 216403549 -65790115 + AluJb SINE Alu 1 295 -17 1486 212 22 26 chr1 216403628 216404016 -65789648 - MER89 LTR ERV1 -72 487 3 2080 121 0 7 chr1 216406243 216406571 -65787093 - AluSx SINE Alu 0 312 1 1093 152 20 5 chr1 216406627 216406824 -65786840 + L1MA3 LINE L1 6104 6303 -2 511 351 14 14 chr1 216407122 216407330 -65786334 + MIR SINE MIR 6 213 -49 24 67 0 0 chr1 216407382 216407427 -65786237 + AT_rich Low_complexity Low_complexity 1 45 0 1096 191 85 14 chr1 216408032 216408106 -65785558 - MER33 DNA MER1_type -2283 302 235 1680 47 0 9 chr1 216408106 216408317 -65785347 + AluY SINE Alu 93 301 -10 1096 191 85 14 chr1 216408317 216408524 -65785140 - MER33 DNA MER1_type -2350 235 1 398 315 116 76 chr1 216408533 216408651 -65785013 - L1M4 LINE L1 -1727 4419 4307 4384 126 23 32 chr1 216408651 216409421 -65784243 - L1MA2 LINE L1 0 6304 5542 398 315 116 76 chr1 216409421 216410130 -65783534 - L1M4 LINE L1 -1839 4307 3559 22 0 0 0 chr1 216411256 216411278 -65782386 + AT_rich Low_complexity Low_complexity 1 22 0 393 280 123 24 chr1 216413276 216413487 -65780177 + Charlie7 DNA MER1_type 14 245 -2367 35 54 0 0 chr1 216413495 216413551 -65780113 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr1 216413712 216413736 -65779928 + AT_rich Low_complexity Low_complexity 1 24 0 890 186 102 143 chr1 216416057 216416606 -65777058 + MER67C LTR ERV1 2 510 -4 322 357 164 20 chr1 216416715 216417402 -65776262 + L2 LINE L2 1732 2517 -797 561 307 68 11 chr1 216418406 216418582 -65775082 - MIR SINE MIR -10 252 67 584 227 40 40 chr1 216418841 216418991 -65774673 - MIR SINE MIR -105 157 8 286 303 32 72 chr1 216419448 216419669 -65773995 - MIR SINE MIR -2 260 49 216 0 0 0 chr1 216420040 216420064 -65773600 + (T)n Simple_repeat Simple_repeat 1 24 0 281 361 57 0 chr1 216420948 216421070 -65772594 - L2 LINE L2 -4 3309 3181 4604 157 43 26 chr1 216421092 216421795 -65771869 - L1 LINE L1 -1720 4426 3701 2210 121 31 6 chr1 216421795 216422150 -65771514 - THE1B LTR MaLR 0 364 1 4604 157 43 26 chr1 216422150 216422401 -65771263 - L1 LINE L1 -2445 3701 3456 649 237 35 18 chr1 216422378 216422606 -65771058 - L1 LINE L1 -2946 3200 2969 * 3597 182 26 50 chr1 216422606 216423967 -65769697 + L1M2 LINE L1 4463 5776 -536 1610 192 7 16 chr1 216424012 216424319 -65769345 + AluJo SINE Alu 2 305 -7 36 40 0 0 chr1 216425026 216425076 -65768588 + AT_rich Low_complexity Low_complexity 1 50 0 687 237 64 0 chr1 216425418 216425574 -65768090 + FAM SINE Alu 1 166 -9 200 349 0 0 chr1 216426313 216426379 -65767285 + L2 LINE L2 3198 3263 -9 1120 109 33 0 chr1 216426470 216426654 -65767010 + L1MA5A LINE L1 6102 6291 -6 2177 107 3 7 chr1 216427238 216427537 -65766127 - AluSx SINE Alu -12 300 3 194 246 18 35 chr1 216427609 216427666 -65765998 - L2 LINE L2 0 3313 3258 21 36 0 0 chr1 216427837 216427865 -65765799 + AT_rich Low_complexity Low_complexity 1 28 0 315 342 17 8 chr1 216429266 216429386 -65764278 + MIR3 SINE MIR 88 208 0 430 374 45 0 chr1 216429860 216430082 -65763582 + MIR SINE MIR 15 246 -16 718 186 0 14 chr1 216430105 216430250 -65763414 + FLAM_C SINE Alu 1 143 0 444 342 65 13 chr1 216430586 216430817 -65762847 - MIR SINE MIR -18 244 2 2124 180 55 72 chr1 216430822 216431350 -65762314 + MLT2B1 LTR ERVL 1 519 -1 367 297 40 34 chr1 216431389 216431564 -65762100 + MIR SINE MIR 58 233 -29 2285 207 47 13 chr1 216432698 216433148 -65760516 + MLT2B1 LTR ERVL 1 465 -55 294 29 0 0 chr1 216433155 216433190 -65760474 + (TG)n Simple_repeat Simple_repeat 2 36 0 4894 121 16 9 chr1 216433226 216433697 -65759967 - L1MA1 LINE L1 0 6302 5836 222 37 0 0 chr1 216433697 216433724 -65759940 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2173 66 0 0 chr1 216433724 216433982 -65759682 - AluY SINE Alu -27 284 27 4894 121 16 9 chr1 216433982 216434284 -65759380 - L1MA1 LINE L1 -465 5837 5523 21 36 0 0 chr1 216434298 216434326 -65759338 + AT_rich Low_complexity Low_complexity 1 28 0 836 161 0 29 chr1 216434365 216434502 -65759162 - FLAM_C SINE Alu -10 133 1 328 174 72 0 chr1 216435789 216435858 -65757806 + MIR SINE MIR 189 262 0 292 258 24 24 chr1 216436316 216436440 -65757224 + L1MC5 LINE L1 7115 7238 -723 208 318 16 0 chr1 216436561 216436624 -65757040 - L2 LINE L2 -2 3311 3248 522 218 0 10 chr1 216437060 216437161 -65756503 + MER94 DNA DNA 2 101 -33 447 19 0 0 chr1 216437581 216437633 -65756031 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 240 214 12 71 chr1 216437902 216437986 -65755678 - L1ME4a LINE L1 -187 5934 5856 577 196 101 30 chr1 216437992 216438160 -65755504 + MER53 DNA DNA 7 186 -3 1389 223 7 7 chr1 216438183 216438487 -65755177 + AluJo SINE Alu 1 304 0 333 295 133 17 chr1 216439084 216439257 -65754407 + MIR SINE MIR 53 245 -17 22 0 0 0 chr1 216440345 216440367 -65753297 + AT_rich Low_complexity Low_complexity 1 22 0 455 345 99 4 chr1 216440661 216440893 -65752771 + MIR SINE MIR 9 262 0 385 291 24 48 chr1 216441145 216441310 -65752354 - MIR SINE MIR -55 207 47 203 250 0 0 chr1 216442219 216442259 -65751405 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr1 216442299 216442324 -65751340 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 329 12 99 chr1 216444057 216444218 -65749446 - L2 LINE L2 0 3272 3126 455 332 32 0 chr1 216445060 216445247 -65748417 - MLT1J LTR MaLR -315 196 4 180 0 0 0 chr1 216446259 216446279 -65747385 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 241 229 29 14 chr1 216446565 216446635 -65747029 + L1ME4a LINE L1 5979 6049 -72 189 107 0 0 chr1 216446955 216446983 -65746681 + (GA)n Simple_repeat Simple_repeat 1 28 0 29 70 0 0 chr1 216448254 216448311 -65745353 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr1 216448777 216448800 -65744864 + AT_rich Low_complexity Low_complexity 1 23 0 874 196 12 6 chr1 216449103 216449276 -65744388 + FAM SINE Alu 2 175 0 6434 141 20 6 chr1 216449602 216450688 -65742976 - L1P LINE L1 -784 5362 4261 273 196 0 0 chr1 216450689 216450745 -65742919 + (TA)n Simple_repeat Simple_repeat 2 57 0 258 32 0 0 chr1 216450745 216450776 -65742888 + (GA)n Simple_repeat Simple_repeat 2 32 0 453 103 0 0 chr1 216451250 216451318 -65742346 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 244 320 41 0 chr1 216451381 216451478 -65742186 + MER117 DNA MER1_type 45 145 -52 1027 64 7 7 chr1 216451781 216451922 -65741742 - L1P2 LINE L1 -407 5747 5607 791 11 0 0 chr1 216451924 216452014 -65741650 + L1PA4 LINE L1 6058 6147 -8 22 0 0 0 chr1 216454009 216454031 -65739633 + AT_rich Low_complexity Low_complexity 1 22 0 181 175 95 79 chr1 216454057 216454120 -65739544 - L2 LINE L2 -533 2781 2718 211 380 99 14 chr1 216454295 216454437 -65739227 + L2 LINE L2 3119 3272 0 861 216 163 42 chr1 216454626 216454768 -65738896 - MER58B DNA MER1_type -2094 326 202 2235 95 0 13 chr1 216454768 216455073 -65738591 - AluY SINE Alu -10 301 1 861 216 163 42 chr1 216455073 216455213 -65738451 - MER58B DNA MER1_type -2218 202 10 532 265 41 18 chr1 216456016 216456186 -65737478 + MER5B DNA MER1_type 5 178 0 256 146 0 21 chr1 216456647 216456695 -65736969 + MER74A LTR ERVL 297 343 -215 5177 94 18 1 chr1 216457242 216457964 -65735700 + L1PA10 LINE L1 5426 6159 -9 382 277 164 71 chr1 216458370 216458501 -65735163 - MIR SINE MIR 0 262 145 2219 121 0 0 chr1 216458501 216458799 -65734865 + AluSg SINE Alu 1 298 -12 382 277 164 71 chr1 216458799 216458905 -65734759 - MIR SINE MIR -117 145 3 261 242 0 129 chr1 216459427 216459561 -65734103 - MIR SINE MIR -62 146 44 200 164 18 55 chr1 216459609 216459664 -65734000 + A-rich Low_complexity Low_complexity 5 57 0 22 35 0 0 chr1 216460325 216460354 -65733310 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 216460862 216460884 -65732780 + AT_rich Low_complexity Low_complexity 1 22 0 1760 227 2 2 chr1 216461180 216461576 -65732088 - L1PB4 LINE L1 -1 6155 5760 1667 130 4 0 chr1 216461576 216461814 -65731850 - AluSq SINE Alu -39 274 36 5618 186 28 29 chr1 216461816 216462812 -65730852 - L1PB4 LINE L1 -817 5329 4333 2312 97 3 0 chr1 216462812 216463122 -65730542 - AluY SINE Alu 0 311 1 5618 186 28 29 chr1 216463122 216463378 -65730286 - L1PB4 LINE L1 -1813 4333 4078 271 260 65 0 chr1 216463705 216463782 -65729882 - L2 LINE L2 -39 3233 3152 21 36 0 0 chr1 216463787 216463815 -65729849 + AT_rich Low_complexity Low_complexity 1 28 0 1884 145 9 3 chr1 216463871 216464189 -65729475 - L1MA6 LINE L1 0 6300 5981 183 245 57 19 chr1 216465056 216465109 -65728555 - L2 LINE L2 -22 3291 3237 251 298 61 61 chr1 216465112 216465243 -65728421 + MIR SINE MIR 34 164 -98 983 171 8 2 chr1 216465283 216465540 -65728124 - AluJb SINE Alu -1 311 1 821 228 68 59 chr1 216465650 216466258 -65727406 + LTR48 LTR ERV1 1 786 -1 2507 46 7 0 chr1 216466508 216466812 -65726852 + AluY SINE Alu 1 306 -5 1169 198 8 4 chr1 216468193 216468436 -65725228 - L1PB4 LINE L1 -2090 4056 3813 * 4160 178 48 50 chr1 216468435 216468913 -65724751 + L1MA10 LINE L1 4781 5258 -1076 315 0 0 0 chr1 216468913 216468948 -65724716 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr1 216468947 216468972 -65724692 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 4160 178 48 50 chr1 216468948 216469839 -65723825 + L1MA10 LINE L1 5258 6111 -223 1336 146 169 11 chr1 216469839 216470100 -65723564 + AluJo SINE Alu 1 302 0 4160 178 48 50 chr1 216470100 216470323 -65723341 + L1MA10 LINE L1 6111 6333 -1 513 234 106 89 chr1 216470421 216470913 -65722751 - L1MEd LINE L1 -4890 1229 730 21 0 0 0 chr1 216471666 216471687 -65721977 + AT_rich Low_complexity Low_complexity 1 21 0 2408 61 0 3 chr1 216471687 216471997 -65721667 - AluY SINE Alu -2 309 1 628 277 189 47 chr1 216472745 216473174 -65720490 + LTR16C LTR ERVL 1 490 -1 400 316 67 26 chr1 216473453 216473646 -65720018 - MIR SINE MIR -54 208 8 1126 276 37 65 chr1 216474442 216474982 -65718682 - L2 LINE L2 -463 2851 2327 24 0 0 0 chr1 216476000 216476024 -65717640 + AT_rich Low_complexity Low_complexity 1 24 0 359 288 26 1 chr1 216476189 216476402 -65717262 - L1ME4a LINE L1 -242 5879 5661 2021 270 57 55 chr1 216476406 216476765 -65716899 - L1ME3A LINE L1 -9 6161 5804 416 313 33 28 chr1 216476765 216476979 -65716685 - MER58C DNA MER1_type 0 215 1 2021 270 57 55 chr1 216476979 216477409 -65716255 - L1ME3A LINE L1 -366 5804 5376 2081 117 3 25 chr1 216477409 216477726 -65715938 - AluSx SINE Alu 0 312 3 2021 270 57 55 chr1 216477726 216478299 -65715365 - L1ME3A LINE L1 -794 5376 4790 337 322 154 38 chr1 216478626 216478893 -65714771 + L2 LINE L2 3015 3312 -1 349 70 35 0 chr1 216478965 216479022 -65714642 + (TTTC)n Simple_repeat Simple_repeat 3 61 0 1770 160 16 19 chr1 216479026 216479046 -65714618 - AluSx SINE Alu 0 312 293 1115 104 0 16 chr1 216479046 216479229 -65714435 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1770 160 16 19 chr1 216479229 216479521 -65714143 - AluSx SINE Alu -19 293 1 5465 119 21 4 chr1 216479943 216480784 -65712880 - L1PA13 LINE L1 -5 6158 5303 * 6358 174 28 11 chr1 216480780 216481990 -65711674 + L1PA13 LINE L1 4065 5295 -851 23 0 0 0 chr1 216482032 216482055 -65711609 + AT_rich Low_complexity Low_complexity 1 23 0 356 263 61 0 chr1 216482269 216482383 -65711281 - MER94 DNA DNA -13 121 1 214 262 0 0 chr1 216484573 216484615 -65709049 - L2 LINE L2 -10 3303 3262 430 315 20 0 chr1 216486812 216486958 -65706706 - L2 LINE L2 0 3313 3165 23 0 0 0 chr1 216488084 216488107 -65705557 + AT_rich Low_complexity Low_complexity 1 23 0 852 287 25 32 chr1 216489704 216490136 -65703528 - L1M4 LINE L1 -2607 3539 3111 4953 204 13 20 chr1 216490162 216491543 -65702121 - L1MA10 LINE L1 -7 6327 4954 6006 219 40 19 chr1 216491546 216492817 -65700847 + L1 LINE L1 3391 4703 -1443 2011 92 3 35 chr1 216492817 216493139 -65700525 - AluSx SINE Alu 0 321 9 6006 219 40 19 chr1 216493139 216493399 -65700265 + L1 LINE L1 4703 4956 -1190 1607 258 56 71 chr1 216493402 216494301 -65699363 - L1M4 LINE L1 -3016 3130 2246 670 193 8 0 chr1 216494312 216494431 -65699233 - MLT1A2 LTR MaLR -11 363 244 284 96 19 19 chr1 216494431 216494483 -65699181 - L1MCc LINE L1 -6106 317 266 966 284 43 51 chr1 216494671 216495349 -65698315 - L2 LINE L2 0 3313 2648 186 272 37 49 chr1 216496208 216496289 -65697375 + L2 LINE L2 3234 3313 0 389 345 136 49 chr1 216496328 216496815 -65696849 + L2 LINE L2 2278 2806 -508 195 42 0 0 chr1 216497177 216497201 -65696463 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1455 111 5 28 chr1 216497223 216497439 -65696225 - AluSx SINE Alu -69 243 33 494 272 6 25 chr1 216497444 216497602 -65696062 + L2 LINE L2 3159 3313 0 24 53 0 0 chr1 216497814 216497852 -65695812 + AT_rich Low_complexity Low_complexity 1 38 0 1000 33 0 0 chr1 216497957 216498079 -65695585 - L1PA8 LINE L1 -201 5971 5850 1448 101 0 14 chr1 216498080 216498288 -65695376 + L1PA8 LINE L1 5967 6171 -1 1390 196 70 53 chr1 216499299 216499656 -65694008 + MLT1A1 LTR MaLR 3 365 0 989 188 0 0 chr1 216501133 216501314 -65692350 + L1PB4 LINE L1 5976 6156 0 228 246 105 70 chr1 216501882 216501996 -65691668 + MLT1H LTR MaLR 133 250 -299 379 268 0 87 chr1 216502105 216502243 -65691421 + MLT1H LTR MaLR 424 549 0 430 331 62 4 chr1 216502840 216503115 -65690549 - L1ME4a LINE L1 -213 5908 5618 225 246 33 0 chr1 216503147 216503208 -65690456 + L2 LINE L2 3251 3313 0 2348 75 0 16 chr1 216503369 216503677 -65689987 + AluY SINE Alu 2 304 -7 2155 117 3 0 chr1 216503812 216504110 -65689554 + AluSq SINE Alu 2 300 -13 629 267 65 61 chr1 216505247 216505524 -65688140 - MLT1A2 LTR MaLR -271 278 1 336 194 14 28 chr1 216506903 216506975 -65686689 + LTR37A LTR ERV1 1 71 -355 13478 30 6 0 chr1 216507296 216509467 -65684197 - L1PA4 LINE L1 -206 5949 3771 1735 32 0 18 chr1 216509467 216509682 -65683982 + L1PA4 LINE L1 5941 6154 -1 1729 149 31 0 chr1 216510131 216510420 -65683244 + AluJo SINE Alu 1 298 -14 941 273 41 21 chr1 216510569 216510957 -65682707 + L1M4 LINE L1 4080 4475 -1671 * 2327 182 75 29 chr1 216510949 216511472 -65682192 + L1MC3 LINE L1 7239 7785 0 38 39 0 0 chr1 216512757 216512809 -65680855 + AT_rich Low_complexity Low_complexity 1 52 0 350 358 41 28 chr1 216515022 216515240 -65678424 + HAL1b LINE L1 438 658 -690 1507 127 81 15 chr1 216516432 216516692 -65676972 - MSTA LTR MaLR 0 428 152 595 192 8 18 chr1 216516843 216516971 -65676693 - MSTA LTR MaLR -240 135 1 261 0 0 0 chr1 216517007 216517036 -65676628 + (CA)n Simple_repeat Simple_repeat 2 30 0 276 259 28 9 chr1 216517043 216517151 -65676513 + (TA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr1 216518548 216518569 -65675095 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr1 216518918 216518961 -65674703 + AT_rich Low_complexity Low_complexity 1 43 0 203 175 0 0 chr1 216519110 216519150 -65674514 + T-rich Low_complexity Low_complexity 1 40 0 42696 31 22 1 chr1 216519161 216525188 -65668476 - L1HS LINE L1 0 6155 2 329 294 113 56 chr1 216525372 216525639 -65668025 + L1MEd LINE L1 52 341 -5778 378 0 0 0 chr1 216525639 216525681 -65667983 + (CA)n Simple_repeat Simple_repeat 1 42 0 329 294 113 56 chr1 216525681 216525733 -65667931 + L1MEd LINE L1 341 389 -5730 183 42 0 0 chr1 216526047 216526071 -65667593 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 1297 214 95 12 chr1 216526299 216526636 -65667028 + MLT1A1 LTR MaLR 1 365 0 641 271 43 61 chr1 216526655 216526932 -65666732 + LTR16A LTR ERVL 179 450 0 21 0 0 0 chr1 216527083 216527104 -65666560 + AT_rich Low_complexity Low_complexity 1 21 0 437 270 96 4 chr1 216527252 216527482 -65666182 + L1M4 LINE L1 4883 5133 -1013 21 36 0 0 chr1 216527489 216527517 -65666147 + AT_rich Low_complexity Low_complexity 1 28 0 1577 146 27 14 chr1 216527521 216527794 -65665870 + L1P LINE L1 5106 5385 -761 630 45 0 23 chr1 216527794 216527867 -65665797 + L1PA11 LINE L1 6086 6171 -3 1577 146 27 14 chr1 216527867 216527887 -65665777 + L1P LINE L1 5385 5403 -743 1072 235 7 11 chr1 216527887 216528164 -65665500 + L1MD3 LINE L1 7719 7994 -1 23 54 0 0 chr1 216528198 216528235 -65665429 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 216528444 216528467 -65665197 + AT_rich Low_complexity Low_complexity 1 23 0 376 202 24 0 chr1 216528708 216528792 -65664872 - AluJo SINE Alu -168 134 49 1188 198 118 12 chr1 216528792 216529131 -65664533 + L1MC2 LINE L1 4860 5234 -912 4243 184 55 48 chr1 216529137 216529623 -65664041 + L1MC2 LINE L1 5323 5804 -540 2480 68 0 0 chr1 216529623 216529941 -65663723 + AluY SINE Alu 3 320 0 4243 184 55 48 chr1 216529941 216530452 -65663212 + L1MC2 LINE L1 5804 6337 -7 2754 258 88 45 chr1 216530454 216531147 -65662517 + L1ME1 LINE L1 3981 4643 -1523 3015 104 13 7 chr1 216531147 216531598 -65662066 + L1PA13 LINE L1 5705 6158 -5 2754 258 88 45 chr1 216531598 216532937 -65660727 + L1ME1 LINE L1 4643 6067 -99 1767 155 52 30 chr1 216532939 216533306 -65660358 - THE1C LTR MaLR 0 375 1 677 279 93 35 chr1 216535133 216536101 -65657563 - L1ME3A LINE L1 -97 6073 5038 1543 229 9 9 chr1 216536103 216536443 -65657221 - MER58B DNA MER1_type 0 341 2 455 296 142 32 chr1 216536459 216537091 -65656573 - L1ME3A LINE L1 -1119 5027 4326 1322 213 123 14 chr1 216537111 216537278 -65656386 - MSTD LTR MaLR 0 396 249 1872 143 0 42 chr1 216537278 216537586 -65656078 - AluSx SINE Alu -17 295 1 1322 213 123 14 chr1 216537586 216537775 -65655889 - MSTD LTR MaLR -147 249 1 219 69 0 0 chr1 216537785 216537814 -65655850 + (TG)n Simple_repeat Simple_repeat 2 30 0 356 194 0 0 chr1 216537817 216537879 -65655785 - Tigger5 DNA MER2_type 0 2323 2262 226 205 0 0 chr1 216537875 216537914 -65655750 + Tigger5 DNA MER2_type 2262 2300 -23 * 304 246 0 0 chr1 216537934 216537999 -65655665 - Tigger5 DNA MER2_type -2255 68 4 * 2715 73 68 8 chr1 216537996 216538377 -65655287 + MLT2A1 LTR ERVL 1 404 -40 317 66 0 98 chr1 216538413 216538474 -65655190 + MLT2A1 LTR ERVL 390 444 0 445 286 84 10 chr1 216538505 216538708 -65654956 - L1ME3A LINE L1 -1901 4245 4028 850 289 31 27 chr1 216538734 216539215 -65654449 - L1ME3A LINE L1 -2167 3979 3497 1382 227 39 24 chr1 216539623 216539954 -65653710 + MER2 DNA MER2_type 3 338 -7 33 25 0 0 chr1 216540267 216540307 -65653357 + AT_rich Low_complexity Low_complexity 1 40 0 2178 119 0 16 chr1 216541016 216541334 -65652330 - AluSq SINE Alu 0 313 1 2186 67 3 3 chr1 216541376 216541661 -65652003 - AluY SINE Alu 0 311 27 225 132 0 0 chr1 216541971 216542009 -65651655 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 306 243 45 54 chr1 216542071 216542182 -65651482 - L1MC4 LINE L1 -1318 6724 6615 2137 123 0 3 chr1 216542183 216542485 -65651179 - AluSp SINE Alu -12 301 1 1217 233 98 25 chr1 216542559 216542885 -65650779 - MLT1A1 LTR MaLR 0 365 16 875 143 0 0 chr1 216543230 216543363 -65650301 - FLAM_C SINE Alu 0 133 1 317 333 23 23 chr1 216543388 216543517 -65650147 - MIR SINE MIR -39 223 95 314 250 0 50 chr1 216544396 216544476 -65649188 - MER115 DNA AcHobo -4 689 614 989 114 0 0 chr1 216545846 216545977 -65647687 + AluSc SINE Alu 146 276 -33 332 325 64 21 chr1 216545993 216546181 -65647483 + HAL1 LINE L1 171 366 -2141 2469 42 7 7 chr1 216546291 216546597 -65647067 + AluY SINE Alu 2 307 -4 186 103 0 0 chr1 216546671 216546700 -65646964 + (TA)n Simple_repeat Simple_repeat 2 30 0 1124 260 44 22 chr1 216546721 216547175 -65646489 + HAL1 LINE L1 910 1373 -1134 1236 186 78 108 chr1 216547228 216547696 -65645968 + MER66A LTR ERV1 98 478 0 303 338 110 7 chr1 216547704 216547858 -65645806 - HAL1 LINE L1 -909 1598 1429 1464 209 68 47 chr1 216547891 216548329 -65645335 - MER66A LTR ERV1 0 478 97 495 257 42 72 chr1 216548712 216548977 -65644687 + HAL1 LINE L1 2251 2507 0 216 0 0 0 chr1 216549188 216549212 -65644452 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 742 200 90 0 chr1 216549215 216549360 -65644304 - FAM SINE Alu -22 163 6 887 294 138 26 chr1 216550044 216550764 -65642900 + L2 LINE L2 2472 3275 -38 225 0 0 0 chr1 216551416 216551441 -65642223 + (TA)n Simple_repeat Simple_repeat 2 26 0 2064 119 0 0 chr1 216553276 216553562 -65640102 - AluSc SINE Alu -13 296 11 1931 164 0 0 chr1 216554275 216554573 -65639091 + AluJb SINE Alu 1 298 -14 183 297 115 22 chr1 216555213 216555395 -65638269 + L2 LINE L2 1863 2061 -1253 374 333 160 0 chr1 216555494 216555650 -65638014 - MER5A DNA MER1_type 0 189 9 233 294 141 11 chr1 216555693 216555785 -65637879 + L2 LINE L2 2218 2321 -993 299 159 0 0 chr1 216556162 216556206 -65637458 + Alu SINE Alu 5 48 -254 * 336 71 0 0 chr1 216556200 216556242 -65637422 + FLAM SINE Alu 81 122 -11 33 0 0 0 chr1 216556290 216556323 -65637341 + AT_rich Low_complexity Low_complexity 1 33 0 1955 90 86 0 chr1 216558038 216558317 -65635347 - AluY SINE Alu -8 303 1 895 168 67 0 chr1 216558867 216559046 -65634618 + MLT1B LTR MaLR 1 191 -199 499 299 12 36 chr1 216559078 216559245 -65634419 + MLT1I-int LTR MaLR 915 1077 -294 264 244 12 24 chr1 216559651 216559733 -65633931 - L1ME LINE L1 -526 5595 5515 25 0 0 0 chr1 216559760 216559785 -65633879 + AT_rich Low_complexity Low_complexity 1 25 0 415 222 13 148 chr1 216559806 216560036 -65633628 - L2 LINE L2 -4 3309 3111 414 325 38 34 chr1 216560170 216560407 -65633257 + MLT1I LTR MaLR 137 374 -35 278 275 54 48 chr1 216560440 216560607 -65633057 - L1P5 LINE L1 -697 5454 5287 358 282 78 10 chr1 216561596 216561699 -65631965 + L2 LINE L2 3162 3271 -1 208 302 0 48 chr1 216561984 216562047 -65631617 + L2 LINE L2 3186 3245 -27 197 83 28 0 chr1 216562121 216562157 -65631507 + (TG)n Simple_repeat Simple_repeat 2 38 0 2668 132 12 2 chr1 216562976 216563400 -65630264 - MSTA LTR MaLR 0 428 1 1594 151 0 4 chr1 216563400 216563639 -65630025 - AluJo SINE Alu -38 274 37 642 207 18 24 chr1 216565091 216565260 -65628404 + MER96B DNA MER1_type? 250 417 0 229 282 87 114 chr1 216566572 216566721 -65626943 - MER5A DNA MER1_type -38 151 7 2114 116 0 7 chr1 216567292 216567586 -65626078 - AluSx SINE Alu -20 292 1 219 114 0 0 chr1 216567674 216567709 -65625955 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr1 216567916 216567952 -65625712 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr1 216568106 216568132 -65625532 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr1 216568432 216568465 -65625199 + AT_rich Low_complexity Low_complexity 1 33 0 207 125 0 0 chr1 216569684 216569724 -65623940 + (TG)n Simple_repeat Simple_repeat 1 40 0 1915 125 3 36 chr1 216570346 216570650 -65623014 + AluSx SINE Alu 1 294 -18 202 104 21 21 chr1 216571100 216571148 -65622516 + (GA)n Simple_repeat Simple_repeat 1 48 0 353 279 87 62 chr1 216571453 216571661 -65622003 + MIR SINE MIR 12 224 -38 1404 172 111 14 chr1 216571662 216571959 -65621705 - MLT1D LTR MaLR 0 505 180 10760 127 10 1 chr1 216571985 216573590 -65620074 + L1PA7 LINE L1 1 1620 -4841 18525 82 7 0 chr1 216573603 216576959 -65616705 + L1PA7 LINE L1 3098 6473 0 549 226 77 30 chr1 216576959 216577127 -65616537 - MLT1D LTR MaLR -329 176 1 1763 175 11 0 chr1 216577302 216577588 -65616076 + AluJb SINE Alu 1 289 -23 274 348 77 39 chr1 216577890 216578097 -65615567 - MIR SINE MIR -27 235 21 1969 122 4 0 chr1 216578747 216579026 -65614638 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr1 216579028 216579055 -65614609 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 32 0 0 0 chr1 216580858 216580890 -65612774 + AT_rich Low_complexity Low_complexity 1 32 0 246 62 0 0 chr1 216580954 216580986 -65612678 + (TAG)n Simple_repeat Simple_repeat 2 33 0 456 338 0 0 chr1 216581033 216581175 -65612489 + MER63A DNA MER1_type 64 205 -5 614 270 126 67 chr1 216581235 216581924 -65611740 - HAL1 LINE L1 -107 2400 1690 1188 298 40 26 chr1 216582010 216583120 -65610544 - HAL1 LINE L1 -649 1858 633 614 141 0 10 chr1 216583121 216583220 -65610444 + MER4A LTR ERV1 1 98 -566 943 133 245 108 chr1 216583220 216583469 -65610195 + MER4A LTR ERV1 261 543 -121 2892 154 13 42 chr1 216583477 216584022 -65609642 - MER61E LTR ERV1 -40 529 1 741 167 8 16 chr1 216584022 216584147 -65609517 + MER4A LTR ERV1 541 664 0 995 288 58 60 chr1 216584190 216584795 -65608869 - HAL1 LINE L1 -1903 604 1 635 214 84 0 chr1 216585567 216585721 -65607943 + L1MA9 LINE L1 5913 6079 -233 475 84 14 0 chr1 216585725 216585796 -65607868 + MER61E LTR ERV1 84 155 -414 1117 140 21 47 chr1 216585796 216586032 -65607632 + L1MA9 LINE L1 6083 6312 0 2191 197 29 2 chr1 216586198 216586619 -65607045 + MSTB1 LTR MaLR 1 432 0 33 43 0 0 chr1 216587143 216587190 -65606474 + AT_rich Low_complexity Low_complexity 1 47 0 432 0 0 0 chr1 216591126 216591174 -65602490 + (CA)n Simple_repeat Simple_repeat 2 49 0 1746 218 41 82 chr1 216591196 216591834 -65601830 + LTR9 LTR ERV1 1 612 0 238 302 114 20 chr1 216591834 216591983 -65601681 + MIR SINE MIR 51 213 -49 1249 148 26 100 chr1 216591985 216592256 -65601408 + MER46B DNA MER2_type 1 126 -110 806 319 123 16 chr1 216592280 216592793 -65600871 - L2 LINE L2 -7 3306 2737 248 241 26 103 chr1 216592821 216592937 -65600727 - MLT1H LTR MaLR -20 529 423 364 286 87 10 chr1 216593070 216593259 -65600405 - MLT1H LTR MaLR -238 171 1 554 244 122 49 chr1 216593263 216593420 -65600244 - L2 LINE L2 -576 2738 2561 3182 173 25 5 chr1 216593420 216594026 -65599638 + LTR29 LTR ERV1 3 620 -2 554 244 122 49 chr1 216594026 216594073 -65599591 - L2 LINE L2 -753 2561 2519 2012 186 85 52 chr1 216594085 216594580 -65599084 - MER67D LTR ERV1 -3 511 1 788 284 40 9 chr1 216594584 216594809 -65598855 + MIR SINE MIR 10 241 -21 587 312 19 0 chr1 216594812 216594969 -65598695 - L2 LINE L2 -779 2535 2376 377 302 0 0 chr1 216595390 216595476 -65598188 + L2 LINE L2 3227 3312 -1 188 132 0 26 chr1 216595910 216595948 -65597716 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 1527 153 0 0 chr1 216595958 216596187 -65597477 + AluSg/x SINE Alu 71 299 -11 1917 170 0 3 chr1 216596496 216596790 -65596874 - AluSg SINE Alu -17 293 1 1416 217 35 43 chr1 216596866 216597234 -65596430 + MLT1A1 LTR MaLR 1 365 0 21 82 0 0 chr1 216597353 216597402 -65596262 + AT_rich Low_complexity Low_complexity 1 49 0 1944 109 55 78 chr1 216597429 216597813 -65595851 - THE1C LTR MaLR 0 375 1 30 77 0 0 chr1 216598371 216598436 -65595228 + AT_rich Low_complexity Low_complexity 1 65 0 203 238 0 0 chr1 216599774 216599816 -65593848 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 22 56 0 0 chr1 216599819 216599855 -65593809 + AT_rich Low_complexity Low_complexity 1 36 0 254 182 18 0 chr1 216600148 216600203 -65593461 + HSMAR1 DNA Mariner 1232 1287 0 1939 146 0 0 chr1 216601293 216601581 -65592083 - AluSx SINE Alu -18 294 7 2194 268 88 29 chr1 216603258 216603678 -65589986 - MER21B LTR ERV1 -52 811 417 2571 121 3 0 chr1 216603678 216604041 -65589623 + THE1B LTR MaLR 1 364 0 2194 268 88 29 chr1 216604041 216604369 -65589295 - MER21B LTR ERV1 -446 417 19 444 221 12 0 chr1 216604400 216604486 -65589178 - MER21B LTR ERV1 -776 87 1 1710 203 79 83 chr1 216604662 216604750 -65588914 + MLT1D LTR MaLR 1 88 -417 2239 179 42 83 chr1 216604750 216605386 -65588278 + LTR38B LTR ERV1 1 610 0 1710 203 79 83 chr1 216605386 216605804 -65587860 + MLT1D LTR MaLR 88 505 0 359 40 0 20 chr1 216607048 216607098 -65586566 + (CA)n Simple_repeat Simple_repeat 2 50 0 659 305 84 25 chr1 216607848 216608087 -65585577 - MIR SINE MIR 0 262 10 348 161 0 0 chr1 216608515 216608577 -65585087 + (TA)n Simple_repeat Simple_repeat 1 62 0 2418 81 0 3 chr1 216608577 216608884 -65584780 - AluY SINE Alu -5 306 1 22 56 0 0 chr1 216610538 216610574 -65583090 + AT_rich Low_complexity Low_complexity 1 36 0 212 308 60 43 chr1 216610820 216610937 -65582727 - MIR SINE MIR -135 127 9 693 218 84 9 chr1 216611267 216611483 -65582181 + MER110A LTR ERV1 267 480 0 28 48 0 0 chr1 216613017 216613059 -65580605 + AT_rich Low_complexity Low_complexity 1 42 0 4175 221 62 105 chr1 216613896 216616657 -65577007 - L1ME1 LINE L1 -249 5917 3268 2450 154 29 12 chr1 216617459 216617880 -65575784 + MSTA LTR MaLR 1 428 0 336 246 9 137 chr1 216619538 216619749 -65573915 + MLT1K LTR MaLR 365 548 -40 620 119 40 0 chr1 216620206 216620332 -65573332 + CT-rich Low_complexity Low_complexity 2 132 0 1592 191 24 6 chr1 216620336 216620676 -65572988 - L1PB4 LINE L1 -3 6153 5808 2084 138 3 0 chr1 216621744 216622048 -65571616 - AluSx SINE Alu -7 305 1 259 214 100 57 chr1 216622222 216622292 -65571372 - MER91B DNA MER1_type -112 78 6 2001 106 29 0 chr1 216622524 216622798 -65570866 - AluSx SINE Alu -30 282 1 27 49 0 0 chr1 216623098 216623139 -65570525 + AT_rich Low_complexity Low_complexity 1 41 0 1989 133 3 25 chr1 216623782 216624097 -65569567 - AluSx SINE Alu -4 308 1 442 274 163 80 chr1 216626774 216627252 -65566412 - MLT1H1 LTR MaLR -2 553 36 24 32 0 0 chr1 216628843 216628874 -65564790 + AT_rich Low_complexity Low_complexity 1 31 0 2316 184 28 0 chr1 216628912 216629369 -65564295 - L1MA6 LINE L1 -4 6296 5827 229 278 144 0 chr1 216629521 216629618 -65564046 + L2 LINE L2 3199 3309 -4 210 253 40 27 chr1 216631247 216631322 -65562342 + CT-rich Low_complexity Low_complexity 6 81 0 2259 155 197 29 chr1 216632055 216632578 -65561086 - LTR18B LTR ERVL 0 614 4 1016 240 35 60 chr1 216633131 216633531 -65560133 - MLT2C1 LTR ERVL -7 390 1 2012 158 21 19 chr1 216633873 216634247 -65559417 + THE1C LTR MaLR 1 375 0 27 29 0 0 chr1 216634256 216634290 -65559374 + AT_rich Low_complexity Low_complexity 1 34 0 1680 204 0 19 chr1 216634612 216634930 -65558734 + AluJo SINE Alu 1 312 0 381 299 87 53 chr1 216636384 216636648 -65557016 - L2 LINE L2 -1106 2208 1936 358 349 52 41 chr1 216637192 216637536 -65556128 - L2 LINE L2 -1571 1743 1396 358 353 68 68 chr1 216637538 216637952 -65555712 - L2 LINE L2 0 3272 2859 743 365 102 16 chr1 216638461 216639099 -65554565 - L2 LINE L2 -743 2571 1879 238 286 120 57 chr1 216639207 216639399 -65554265 - L2 LINE L2 -1361 1953 1750 450 283 151 12 chr1 216639559 216639810 -65553854 - L1ME4a LINE L1 -11 6110 5825 2067 127 20 28 chr1 216639812 216640166 -65553498 - L1PB4 LINE L1 -16 6140 5790 1338 245 37 23 chr1 216640166 216640830 -65552834 - L1PBb LINE L1 -4842 1362 690 1058 323 18 10 chr1 216640807 216641285 -65552379 - L1PBb LINE L1 -5276 927 354 * 661 384 0 7 chr1 216641399 216641709 -65551955 - L1PBb LINE L1 -5844 360 53 533 343 36 71 chr1 216641737 216642460 -65551204 - L1M2b LINE L1 -5223 1986 56 3652 157 32 30 chr1 216643014 216643740 -65549924 - LTR8A LTR ERV1 0 727 1 457 171 34 11 chr1 216644454 216644542 -65549122 + MER4A LTR ERV1 1 90 -574 2268 113 0 3 chr1 216644542 216644853 -65548811 - AluSg SINE Alu 0 310 1 1565 155 35 22 chr1 216644869 216645210 -65548454 + MER4A LTR ERV1 261 664 0 2214 132 130 67 chr1 216645213 216646205 -65547459 + MER4A-int LTR ERV1 1 1152 -5446 414 0 0 0 chr1 216646205 216646251 -65547413 + (TG)n Simple_repeat Simple_repeat 1 46 0 2214 132 130 67 chr1 216646251 216646317 -65547347 + MER4A-int LTR ERV1 1152 1212 -5386 705 196 12 18 chr1 216646311 216646479 -65547185 + MER4-int LTR ERV1 3396 3562 -3036 * 1525 108 14 9 chr1 216646482 216646704 -65546960 + MER4B LTR ERV1 388 610 0 232 368 55 55 chr1 216647647 216647900 -65545764 - L2 LINE L2 0 3272 3020 3722 136 112 65 chr1 216649200 216649989 -65543675 + LTR12 LTR ERV1 1 826 0 436 293 72 65 chr1 216650000 216650350 -65543314 - L1 LINE L1 -2043 4103 3739 253 255 149 43 chr1 216650396 216650557 -65543107 - LTR50 LTR ERVL -7 788 611 337 228 109 0 chr1 216650929 216651030 -65542634 - LTR50 LTR ERVL -680 115 4 2316 84 0 0 chr1 216651046 216651342 -65542322 - AluY SINE Alu -2 309 14 1498 158 36 23 chr1 216651371 216651712 -65541952 + MER4A LTR ERV1 261 664 0 2194 133 128 65 chr1 216651715 216652706 -65540958 + MER4A-int LTR ERV1 1 1152 -5446 342 0 0 0 chr1 216652706 216652744 -65540920 + (TG)n Simple_repeat Simple_repeat 1 38 0 2194 133 128 65 chr1 216652744 216652810 -65540854 + MER4A-int LTR ERV1 1152 1212 -5386 705 196 12 18 chr1 216652804 216652972 -65540692 + MER4-int LTR ERV1 3396 3562 -3036 * 1525 108 14 9 chr1 216652975 216653197 -65540467 + MER4B LTR ERV1 388 610 0 232 368 55 55 chr1 216654139 216654392 -65539272 - L2 LINE L2 0 3272 3020 688 229 83 49 chr1 216655628 216655833 -65537831 - MIR SINE MIR -46 216 5 2233 113 0 16 chr1 216655975 216656284 -65537380 + AluSx SINE Alu 1 304 -8 427 335 59 27 chr1 216657790 216658011 -65535653 + MLT1K LTR MaLR 151 378 -210 1899 164 7 0 chr1 216661404 216661702 -65531962 + AluJb SINE Alu 1 300 -12 240 287 31 116 chr1 216662188 216662317 -65531347 + MIR3 SINE MIR 66 183 -25 276 172 0 0 chr1 216664564 216664622 -65529042 + (TA)n Simple_repeat Simple_repeat 1 58 0 285 273 16 55 chr1 216664646 216664774 -65528890 + (TATATG)n Simple_repeat Simple_repeat 6 128 0 279 0 0 0 chr1 216664779 216664810 -65528854 + (TG)n Simple_repeat Simple_repeat 2 32 0 335 336 28 37 chr1 216665207 216665421 -65528243 + L1M4 LINE L1 3789 4000 -2146 1973 117 0 14 chr1 216665555 216665838 -65527826 - AluSg SINE Alu -9 301 23 1515 246 27 23 chr1 216667347 216667775 -65525889 - LTR40a LTR ERVL -5 514 5 516 296 12 6 chr1 216667819 216667981 -65525683 + MIR SINE MIR 78 240 -22 25 31 0 0 chr1 216669159 216669191 -65524473 + AT_rich Low_complexity Low_complexity 1 32 0 1849 148 96 24 chr1 216669890 216670222 -65523442 - THE1B LTR MaLR 0 364 9 2063 140 0 3 chr1 216670726 216671026 -65522638 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr1 216671203 216671224 -65522440 + AT_rich Low_complexity Low_complexity 1 21 0 206 229 0 0 chr1 216671756 216671804 -65521860 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 352 256 26 73 chr1 216672274 216672465 -65521199 - L2 LINE L2 -8 3305 3124 5029 163 27 98 chr1 216673657 216675014 -65518650 - L1 LINE L1 -752 5394 4134 558 142 0 28 chr1 216675288 216675394 -65518270 - AluSg/x SINE Alu 0 312 210 1145 123 0 6 chr1 216675494 216675657 -65518007 - AluSx SINE Alu -150 162 1 21 0 0 0 chr1 216676072 216676093 -65517571 + AT_rich Low_complexity Low_complexity 1 21 0 1252 204 88 33 chr1 216676184 216676458 -65517206 - AluJo SINE Alu -23 289 1 314 298 0 0 chr1 216676461 216676565 -65517099 - L1M4 LINE L1 -1536 4610 4507 22 0 0 0 chr1 216676872 216676894 -65516770 + AT_rich Low_complexity Low_complexity 1 22 0 2011 125 0 3 chr1 216676909 216677226 -65516438 - AluY SINE Alu 0 311 1 21 0 0 0 chr1 216677322 216677343 -65516321 + AT_rich Low_complexity Low_complexity 1 21 0 2227 165 51 22 chr1 216677663 216678076 -65515588 - MSTA LTR MaLR 0 428 4 245 292 15 0 chr1 216679889 216679954 -65513710 + MIR SINE MIR 84 149 -113 2238 114 3 0 chr1 216679964 216680272 -65513392 + AluSp SINE Alu 1 309 -4 276 204 213 19 chr1 216680383 216680491 -65513173 - MIR SINE MIR -18 244 116 245 279 16 0 chr1 216680766 216680827 -65512837 - L2 LINE L2 -71 3242 3181 344 341 20 35 chr1 216681064 216681319 -65512345 - MLT1L LTR MaLR -9 606 356 670 332 17 75 chr1 216681752 216682101 -65511563 - L2 LINE L2 -1 3271 2943 443 319 57 8 chr1 216682723 216682971 -65510693 - MIR SINE MIR -1 261 2 469 296 35 47 chr1 216683462 216683719 -65509945 - MLT1L LTR MaLR -318 297 44 16453 33 3 0 chr1 216683843 216686473 -65507191 - L1PA3 LINE L1 -122 6033 3397 1990 272 71 61 chr1 216686704 216687586 -65506078 + L2 LINE L2 2180 3070 -243 2014 146 0 3 chr1 216687937 216688232 -65505432 + AluSx SINE Alu 1 294 -18 731 303 115 32 chr1 216689360 216689733 -65503931 - L2 LINE L2 -14 3299 2896 610 260 91 14 chr1 216689984 216690192 -65503472 - MIR SINE MIR -3 259 36 690 251 53 141 chr1 216690221 216690822 -65502842 + MLT1H LTR MaLR 2 549 0 22 0 0 0 chr1 216692600 216692622 -65501042 + AT_rich Low_complexity Low_complexity 1 22 0 3551 47 44 0 chr1 216692622 216693074 -65500590 - L1PA7 LINE L1 -4 6150 5679 2600 191 55 4 chr1 216693935 216694458 -65499206 + MER44D DNA MER2_type 1 605 0 285 75 0 0 chr1 216695721 216695761 -65497903 + (CA)n Simple_repeat Simple_repeat 2 41 0 656 292 15 20 chr1 216698311 216698513 -65495151 - MER63A DNA MER1_type -6 204 4 1627 163 0 75 chr1 216699384 216699521 -65494143 + AluSx SINE Alu 1 105 -207 2122 108 0 4 chr1 216699521 216699829 -65493835 + AluSc SINE Alu 1 307 0 1627 163 0 75 chr1 216699829 216699997 -65493667 + AluSx SINE Alu 105 284 -28 531 31 0 0 chr1 216699997 216700062 -65493602 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 333 186 0 0 chr1 216700073 216700143 -65493521 + (TA)n Simple_repeat Simple_repeat 2 71 0 34 0 0 0 chr1 216700213 216700247 -65493417 + AT_rich Low_complexity Low_complexity 1 34 0 285 333 21 35 chr1 216700395 216700536 -65493128 + L2 LINE L2 3171 3309 -4 1078 306 34 50 chr1 216700820 216701400 -65492264 + L2 LINE L2 2554 3123 -190 180 111 0 0 chr1 216701537 216701564 -65492100 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 13300 152 18 13 chr1 216702713 216702971 -65490693 + Tigger1 DNA MER2_type 1 256 -2162 501 118 13 0 chr1 216702971 216703047 -65490617 + MADE1 DNA Mariner 4 80 0 13300 152 18 13 chr1 216703047 216705041 -65488623 + Tigger1 DNA MER2_type 256 2263 -155 1107 186 25 0 chr1 216706080 216706376 -65487288 + L1MC/D LINE L1 5133 5433 -743 2164 182 24 0 chr1 216707329 216707708 -65485956 - MSTD LTR MaLR -8 388 1 811 277 254 25 chr1 216707981 216708727 -65484937 - L2 LINE L2 -2 3311 2399 209 345 155 24 chr1 216709247 216709583 -65484081 + L2 LINE L2 1527 1906 -1408 923 174 51 11 chr1 216709676 216709854 -65483810 + MER74A LTR ERVL 5 189 -369 192 77 0 0 chr1 216709864 216709890 -65483774 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 5795 63 3 16 chr1 216709982 216711370 -65482294 + L1PA7 LINE L1 4634 6146 -8 1582 142 4 0 chr1 216711529 216711762 -65481902 + AluSx SINE Alu 1 234 -78 264 250 0 0 chr1 216711773 216711829 -65481835 + GA-rich Low_complexity Low_complexity 2 57 0 765 119 12 83 chr1 216712145 216712313 -65481351 - L1MB2 LINE L1 -3 6168 6013 3008 198 29 19 chr1 216712422 216713089 -65480575 - L1MB3 LINE L1 -7 6176 5504 301 170 0 0 chr1 216713092 216713139 -65480525 - MLT2D LTR ERVL -1 413 367 312 143 0 0 chr1 216713167 216713223 -65480441 + (TA)n Simple_repeat Simple_repeat 1 56 0 258 217 0 0 chr1 216713270 216713339 -65480325 + (TA)n Simple_repeat Simple_repeat 1 69 0 1704 225 36 8 chr1 216713375 216713731 -65479933 - MLT2D LTR ERVL -48 366 1 245 182 22 65 chr1 216713731 216713824 -65479840 - L1P5 LINE L1 -650 5506 5414 1170 180 75 25 chr1 216714236 216714727 -65478937 - L1MB3 LINE L1 -657 5521 4996 334 267 227 13 chr1 216714918 216715068 -65478596 - MIR SINE MIR -25 237 56 395 282 148 7 chr1 216715152 216715294 -65478370 - MER5B DNA MER1_type 0 178 17 20560 30 7 0 chr1 216717689 216720942 -65472722 - L1PA3 LINE L1 -4 6151 2874 540 316 111 58 chr1 216721152 216721665 -65471999 + L2 LINE L2 1933 2472 -842 226 380 57 35 chr1 216722020 216722249 -65471415 + L2 LINE L2 2858 3091 -181 23 0 0 29 chr1 216722416 216722434 -65471230 + AT_rich Low_complexity Low_complexity 1 19 -14 837 10 0 10 chr1 216722434 216722533 -65471131 - L1PA5 LINE L1 -8 6146 6049 23 0 0 29 chr1 216722533 216722548 -65471116 + AT_rich Low_complexity Low_complexity 19 33 0 2101 165 32 27 chr1 216722792 216722968 -65470696 - MER57A LTR ERV1 0 403 229 1735 128 95 4 chr1 216722968 216723241 -65470423 + AluSx SINE Alu 6 303 -9 2101 165 32 27 chr1 216723241 216723465 -65470199 - MER57A LTR ERV1 -174 229 1 219 250 54 0 chr1 216723606 216723662 -65470002 - MER91B DNA MER1_type -112 78 20 209 179 0 0 chr1 216723754 216723793 -65469871 + (CA)n Simple_repeat Simple_repeat 2 40 0 1471 160 78 35 chr1 216724550 216724832 -65468832 + AluJo SINE Alu 1 294 -18 350 296 105 25 chr1 216725047 216725209 -65468455 + MIR SINE MIR 8 182 -80 270 176 0 0 chr1 216725358 216725409 -65468255 + (TG)n Simple_repeat Simple_repeat 2 52 0 372 294 35 0 chr1 216725567 216725710 -65467954 + LTR16A LTR ERVL 303 450 0 266 262 119 16 chr1 216725710 216725836 -65467828 - MIR SINE MIR -95 167 29 23 0 0 0 chr1 216725983 216726006 -65467658 + AT_rich Low_complexity Low_complexity 1 23 0 2451 78 0 0 chr1 216726009 216726318 -65467346 + AluY SINE Alu 1 309 -2 337 228 109 0 chr1 216726334 216726435 -65467229 + LTR50 LTR ERVL 4 115 -680 253 255 149 43 chr1 216726807 216726968 -65466696 + LTR50 LTR ERVL 611 788 -7 424 285 66 69 chr1 216727090 216727364 -65466300 + L1M4 LINE L1 3831 4103 -2043 3722 136 112 65 chr1 216727375 216728164 -65465500 - LTR12 LTR ERV1 0 826 1 603 228 68 50 chr1 216728227 216728508 -65465156 - pTR5 LTR ERV1 -1410 1028 743 1310 158 52 119 chr1 216728508 216728895 -65464769 - MLT1A1 LTR MaLR -4 361 1 242 262 49 67 chr1 216729208 216729253 -65464411 + L1M4 LINE L1 4487 4531 -1615 2039 116 59 34 chr1 216729253 216729608 -65464056 - THE1B LTR MaLR 0 364 1 242 262 49 67 chr1 216729608 216729787 -65463877 + L1M4 LINE L1 4531 4707 -1439 1148 272 41 36 chr1 216730058 216730243 -65463421 + LTR52 LTR ERVL 3 186 -235 2366 79 7 7 chr1 216730243 216730548 -65463116 - AluY SINE Alu -6 305 1 1148 272 41 36 chr1 216730548 216730774 -65462890 + LTR52 LTR ERVL 186 416 -5 1121 187 204 0 chr1 216730800 216731064 -65462600 - AluSx SINE Alu 0 312 1 946 312 57 71 chr1 216731426 216732191 -65461473 - L2 LINE L2 -3 3310 2557 26 0 0 0 chr1 216732311 216732337 -65461327 + AT_rich Low_complexity Low_complexity 1 26 0 6143 93 27 0 chr1 216732431 216733398 -65460266 - L1PA10 LINE L1 -8 6475 5490 19229 146 35 22 chr1 216733398 216738172 -65455492 - L1PA10 LINE L1 -1598 4863 1 267 29 29 0 chr1 216738303 216738338 -65455326 + MADE1 DNA Mariner 45 80 0 189 246 0 98 chr1 216738920 216738981 -65454683 - L2 LINE L2 -19 3294 3240 513 305 72 22 chr1 216742541 216742862 -65450802 - L1ME4a LINE L1 -251 5870 5534 181 369 31 23 chr1 216743340 216743470 -65450194 - L2 LINE L2 -409 2905 2775 22 0 0 0 chr1 216743828 216743850 -65449814 + AT_rich Low_complexity Low_complexity 1 22 0 2923 160 2 6 chr1 216744028 216744515 -65449149 + LOR1a LTR ERV1 1 485 -12 251 237 53 0 chr1 216745462 216745538 -65448126 + MLT1G LTR MaLR 495 574 -16 22 0 0 0 chr1 216745695 216745717 -65447947 + AT_rich Low_complexity Low_complexity 1 22 0 2307 72 3 7 chr1 216746001 216746292 -65447372 - AluY SINE Alu -18 293 4 183 309 64 64 chr1 216748671 216748781 -65444883 + L2 LINE L2 2187 2296 -1018 192 77 0 0 chr1 216748799 216748825 -65444839 + (CATA)n Simple_repeat Simple_repeat 2 27 0 265 325 26 17 chr1 216749119 216749236 -65444428 - L2 LINE L2 -550 2764 2647 915 270 80 52 chr1 216749874 216750732 -65442932 + L1MEc LINE L1 2065 2914 -3301 2371 175 65 37 chr1 216750733 216751224 -65442440 + ERVL-D LTR ERVL 5254 5758 -6 1873 203 8 11 chr1 216751226 216751590 -65442074 + MLT2D LTR ERVL 4 366 -48 232 204 19 0 chr1 216751627 216751681 -65441983 + MLT2D LTR ERVL 461 515 0 676 294 48 7 chr1 216751686 216751975 -65441689 + L1M4 LINE L1 4549 4849 -1297 452 75 0 0 chr1 216752203 216752270 -65441394 - Alu SINE Alu 0 318 252 375 208 28 9 chr1 216752688 216752794 -65440870 - L1MA3 LINE L1 0 6305 6198 413 350 130 50 chr1 216752814 216753331 -65440333 - L2 LINE L2 -571 2743 2186 2047 136 0 16 chr1 216753429 216753739 -65439925 - AluSx SINE Alu -7 305 1 862 236 0 6 chr1 216754178 216754360 -65439304 - AluJb SINE Alu 0 312 132 461 95 4 1 chr1 216755672 216755950 -65437714 - AluSc SINE Alu 0 312 2 324 0 0 0 chr1 216756208 216756244 -65437420 + (CA)n Simple_repeat Simple_repeat 1 36 0 2083 136 0 10 chr1 216756511 216756819 -65436845 + AluSx SINE Alu 2 306 -6 1893 159 0 3 chr1 216757353 216757662 -65436002 + AluJb SINE Alu 1 308 -4 1321 233 102 52 chr1 216757847 216758303 -65435361 + MLT2B1 LTR ERVL 9 492 -28 585 28 0 0 chr1 216758303 216758374 -65435290 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1321 233 102 52 chr1 216758374 216758397 -65435267 + MLT2B1 LTR ERVL 492 512 -8 1020 242 122 41 chr1 216758577 216758971 -65434693 + L1MC4 LINE L1 7460 7821 -221 2499 68 0 0 chr1 216758971 216759280 -65434384 + AluY SINE Alu 1 309 -2 1020 242 122 41 chr1 216759280 216759316 -65434348 + L1MC4 LINE L1 7821 7853 -189 261 0 0 0 chr1 216759316 216759345 -65434319 + (TG)n Simple_repeat Simple_repeat 2 30 0 1020 242 122 41 chr1 216759345 216759446 -65434218 + L1MC4 LINE L1 7853 8035 -7 379 258 10 0 chr1 216759724 216759821 -65433843 - L2 LINE L2 -2 3270 3173 186 343 199 12 chr1 216759995 216760161 -65433503 - L2 LINE L2 -338 2976 2780 379 284 55 125 chr1 216760294 216760695 -65432969 + L2 LINE L2 2900 3272 0 229 309 79 22 chr1 216760771 216760910 -65432754 + L1ME4a LINE L1 5516 5662 -459 357 288 78 52 chr1 216761064 216761255 -65432409 + L1ME4a LINE L1 5925 6120 -1 2174 100 0 0 chr1 216761260 216761541 -65432123 + AluSc SINE Alu 17 297 -12 345 269 126 0 chr1 216761902 216762021 -65431643 + L2 LINE L2 3180 3313 0 184 319 21 0 chr1 216762826 216762873 -65430791 - L3 LINE CR1 -96 1481 1434 * 233 286 143 9 chr1 216762863 216762968 -65430696 + L2 LINE L2 3195 3313 0 353 353 53 0 chr1 216763113 216763283 -65430381 - L1ME4a LINE L1 -258 5863 5685 1735 164 0 17 chr1 216763306 216763621 -65430043 + AluJo SINE Alu 3 312 0 1143 156 84 27 chr1 216763729 216763992 -65429672 - L1MA7 LINE L1 -1 6290 6013 620 343 17 13 chr1 216764041 216764280 -65429384 + MIR SINE MIR 2 241 -21 30 27 0 0 chr1 216764320 216764357 -65429307 + AT_rich Low_complexity Low_complexity 1 37 0 279 0 0 0 chr1 216764415 216764446 -65429218 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 211 48 24 chr1 216764528 216764902 -65428762 - MLT1B LTR MaLR 0 390 8 439 291 6 47 chr1 216764969 216765141 -65428523 - L1ME3A LINE L1 -17 6153 5989 447 272 84 5 chr1 216765151 216765353 -65428311 - L1ME3A LINE L1 -233 5937 5720 430 313 108 8 chr1 216765365 216765624 -65428040 - L1ME3A LINE L1 -503 5661 5377 2792 162 19 45 chr1 216766093 216766268 -65427396 + MLT2B1 LTR ERVL 1 179 -341 1860 125 55 30 chr1 216766268 216766596 -65427068 + MER1B DNA MER1_type 1 336 -1 2792 162 19 45 chr1 216766596 216766952 -65426712 + MLT2B1 LTR ERVL 179 518 -2 22 0 0 0 chr1 216767345 216767367 -65426297 + AT_rich Low_complexity Low_complexity 1 22 0 291 102 41 0 chr1 216767422 216767471 -65426193 + L2 LINE L2 3263 3313 0 187 327 124 18 chr1 216767972 216768085 -65425579 + L2 LINE L2 3180 3304 -9 2496 195 28 13 chr1 216768245 216768779 -65424885 - L1MB2 LINE L1 -175 6232 5691 1955 161 80 0 chr1 216768786 216769122 -65424542 + MER39B LTR ERV1 1 363 -290 665 198 38 13 chr1 216769116 216769273 -65424391 + MER39B LTR ERV1 491 651 -2 * 1249 181 11 12 chr1 216769274 216769485 -65424179 - L1MB2 LINE L1 -730 5686 5475 12829 162 32 8 chr1 216769485 216771846 -65421818 - Tigger1 DNA MER2_type -1 2417 1 1249 181 11 12 chr1 216771846 216772024 -65421640 - L1MB2 LINE L1 -941 5475 5298 6933 175 40 24 chr1 216772038 216773527 -65420137 - L1MB2 LINE L1 -4477 1907 396 2231 151 16 13 chr1 216773527 216773899 -65419765 - THE1C LTR MaLR 0 375 3 2825 122 25 41 chr1 216773903 216774386 -65419278 - THE1C-int LTR MaLR -2 1578 1104 659 228 34 0 chr1 216774386 216774535 -65419129 + MER21A-int LTR ERV1 4038 4191 0 191 136 68 0 chr1 216774567 216774626 -65419038 + (TA)n Simple_repeat Simple_repeat 1 63 0 415 149 15 0 chr1 216774644 216774711 -65418953 + MER21A LTR ERV1 42 109 -822 43149 30 21 1 chr1 216774726 216780754 -65412910 + L1HS LINE L1 4 6155 0 345 102 0 0 chr1 216780758 216780817 -65412847 + (A)n Simple_repeat Simple_repeat 1 59 0 842 238 61 12 chr1 216780819 216781094 -65412570 + MER21A LTR ERV1 122 576 -355 29 60 0 0 chr1 216782296 216782346 -65411318 + AT_rich Low_complexity Low_complexity 1 50 0 278 221 39 0 chr1 216782476 216782553 -65411111 - MER103 DNA DNA -77 89 10 842 311 81 50 chr1 216783354 216783956 -65409708 + HAL1 LINE L1 808 1428 -1079 407 333 38 0 chr1 216784130 216784343 -65409321 + HAL1 LINE L1 1472 1692 -815 12725 178 15 31 chr1 216784722 216785138 -65408526 + L1MA3 LINE L1 2496 2917 -3388 1919 124 11 0 chr1 216785138 216785439 -65408225 + AluSg SINE Alu 1 279 -31 12725 178 15 31 chr1 216785439 216785741 -65407923 + L1MA3 LINE L1 2917 3222 -3083 1949 145 0 7 chr1 216785741 216786037 -65407627 - AluSx SINE Alu -18 294 1 12725 178 15 31 chr1 216786037 216789195 -65404469 + L1MA3 LINE L1 3222 6305 0 1945 124 10 23 chr1 216789309 216789615 -65404049 + AluSx SINE Alu 1 302 -10 230 178 0 0 chr1 216789760 216789805 -65403859 + L1 LINE L1 5150 5194 -952 338 305 64 43 chr1 216789837 216789978 -65403686 + HAL1b LINE L1 768 911 -437 34 19 0 19 chr1 216790218 216790238 -65403426 + AT_rich Low_complexity Low_complexity 1 20 -31 1602 163 7 68 chr1 216790238 216790545 -65403119 + AluSx SINE Alu 1 288 -24 34 19 0 19 chr1 216790545 216790576 -65403088 + AT_rich Low_complexity Low_complexity 20 51 0 232 316 107 20 chr1 216790763 216791016 -65402648 - L1MC/D LINE L1 -1900 5908 5634 540 305 16 26 chr1 216791141 216791331 -65402333 - MER5A DNA MER1_type 0 189 2 689 297 91 13 chr1 216791361 216791812 -65401852 - L1MEc LINE L1 -4328 2068 1583 2564 128 0 3 chr1 216792077 216792453 -65401211 - THE1C LTR MaLR 0 375 1 1522 98 61 61 chr1 216792726 216793843 -65399821 + SVA Other Other 444 739 -647 6202 98 38 21 chr1 216793854 216794775 -65398889 + SVA Other Other 433 1369 -17 230 0 33 0 chr1 216794780 216794810 -65398854 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 621 274 113 17 chr1 216795015 216795402 -65398262 + LTR16A LTR ERVL 1 450 0 22 35 0 0 chr1 216796983 216797012 -65396652 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 216797385 216797406 -65396258 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1253 188 8 4 chr1 216797417 216797651 -65396013 - AluJo SINE Alu -77 235 1 1293 133 0 25 chr1 216797896 216798092 -65395572 - AluSx SINE Alu -121 191 1 245 270 113 52 chr1 216798236 216798351 -65395313 - L2 LINE L2 -4 3309 3188 2316 81 3 0 chr1 216798351 216798635 -65395029 - AluSc SINE Alu -22 287 3 345 332 67 41 chr1 216799582 216799850 -65393814 + MLT1J LTR MaLR 71 345 -166 21 0 0 0 chr1 216800253 216800274 -65393390 + AT_rich Low_complexity Low_complexity 1 21 0 531 165 134 0 chr1 216800274 216800371 -65393293 - AluJb SINE Alu -27 285 176 709 257 34 24 chr1 216801238 216801444 -65392220 - MER3 DNA MER1_type 0 209 2 183 42 0 0 chr1 216801695 216801719 -65391945 + (GA)n Simple_repeat Simple_repeat 1 24 0 339 235 54 81 chr1 216801807 216801956 -65391708 + MER110-int LTR ERV1 2785 2929 -1718 1244 208 39 56 chr1 216801974 216802369 -65391295 + MER67C LTR ERV1 1 410 -236 3230 142 58 38 chr1 216803059 216803659 -65390005 - LTR9 LTR ERV1 0 612 1 1876 140 3 7 chr1 216804024 216804310 -65389354 + AluJo SINE Alu 1 285 -27 195 204 0 0 chr1 216804663 216804712 -65388952 + A-rich Low_complexity Low_complexity 1 49 0 909 294 127 41 chr1 216804730 216805220 -65388444 + MER90 LTR ERV1 69 600 -14 380 303 18 0 chr1 216805250 216805359 -65388305 - MIR SINE MIR -134 128 18 395 221 206 20 chr1 216807405 216807609 -65386055 - MER67D LTR ERV1 -4 510 269 * 879 193 23 6 chr1 216807576 216807752 -65385912 - MER67C LTR ERV1 -307 403 225 1176 225 40 24 chr1 216807865 216808245 -65385419 + LTR10B LTR ERV1 120 547 0 961 239 15 15 chr1 216808245 216808505 -65385159 + HERVI LTR ERV1 2 261 -7524 372 194 21 32 chr1 216808551 216808644 -65385020 + HERVI LTR ERV1 225 316 -6333 * 2279 218 14 22 chr1 216808641 216809150 -65384514 + HERVI LTR ERV1 511 1015 -6770 7674 27 0 0 chr1 216810199 216811396 -65382268 + L1PA3 LINE L1 5104 6300 0 378 276 179 8 chr1 216811543 216811677 -65381987 + MIR3 SINE MIR 13 169 -39 21 0 0 0 chr1 216811754 216811775 -65381889 + AT_rich Low_complexity Low_complexity 1 21 0 383 306 14 0 chr1 216812100 216812247 -65381417 + GA-rich Low_complexity Low_complexity 2 150 0 334 278 11 34 chr1 216812288 216812464 -65381200 + GA-rich Low_complexity Low_complexity 1 172 0 10474 245 41 27 chr1 216812652 216812745 -65380919 + HERVI LTR ERV1 4844 4934 -2851 189 0 0 0 chr1 216812745 216812766 -65380898 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1854 116 95 3 chr1 216812766 216813051 -65380613 + AluY SINE Alu 1 311 0 10474 245 41 27 chr1 216813051 216815856 -65377808 + HERVI LTR ERV1 4933 7784 -1 1038 267 46 29 chr1 216815859 216816357 -65377307 + LTR10B LTR ERV1 1 547 0 722 196 0 0 chr1 216816372 216816505 -65377159 + FRAM SINE Alu 18 150 -26 219 103 0 0 chr1 216816505 216816544 -65377120 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 724 176 57 105 chr1 216816566 216816776 -65376888 - MER67D LTR ERV1 -312 202 3 331 360 46 11 chr1 216817607 216817782 -65375882 + MIR SINE MIR 53 233 -29 310 279 107 0 chr1 216818010 216818132 -65375532 + MIR SINE MIR 107 241 -21 1600 147 88 16 chr1 216818177 216818497 -65375167 + MER61A LTR ERV1 1 343 0 3182 187 59 16 chr1 216818497 216819175 -65374489 + MER61A-int LTR ERV1 1 707 -4510 5526 92 44 16 chr1 216819205 216820684 -65372980 + MER61-int LTR ERV1 1655 2987 -2230 1879 226 32 3 chr1 216820989 216821361 -65372303 - MSTD LTR MaLR 0 396 14 766 153 0 0 chr1 216822303 216822421 -65371243 - FLAM_C SINE Alu -25 118 1 411 299 73 0 chr1 216823217 216823354 -65370310 - L2 LINE L2 0 3313 3167 687 232 53 106 chr1 216824086 216824196 -65369468 + MER45C DNA AcHobo 1 115 -838 2159 80 0 21 chr1 216824196 216824529 -65369135 - AluY SINE Alu 0 327 1 687 232 53 106 chr1 216824529 216824663 -65369001 + MER45C DNA AcHobo 115 233 -720 415 245 141 51 chr1 216824644 216824966 -65368698 + MER45C DNA AcHobo 600 943 -10 * 182 269 179 0 chr1 216826624 216826691 -65366973 - L2 LINE L2 -27 3245 3167 256 293 24 24 chr1 216827079 216827161 -65366503 - L2 LINE L2 -1 3312 3231 23 68 0 0 chr1 216827591 216827635 -65366029 + AT_rich Low_complexity Low_complexity 1 44 0 1927 131 7 10 chr1 216828001 216828292 -65365372 + AluSx SINE Alu 1 290 -22 601 316 72 61 chr1 216828854 216829329 -65364335 + MLT1J LTR MaLR 1 480 -31 216 0 0 0 chr1 216829410 216829434 -65364230 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr1 216829954 216829982 -65363682 + AT_rich Low_complexity Low_complexity 1 28 0 225 307 98 13 chr1 216830332 216830485 -65363179 + MIR SINE MIR 72 237 -25 1250 166 9 18 chr1 216831101 216831324 -65362340 - AluJo SINE Alu -15 297 77 21 0 0 0 chr1 216831639 216831660 -65362004 + AT_rich Low_complexity Low_complexity 1 21 0 380 305 138 6 chr1 216831766 216831933 -65361731 - MIR SINE MIR 0 262 74 2033 137 0 0 chr1 216832559 216832866 -65360798 - AluSx SINE Alu 0 307 1 25 0 0 0 chr1 216833286 216833311 -65360353 + AT_rich Low_complexity Low_complexity 1 25 0 390 234 32 0 chr1 216833836 216833930 -65359734 + L1MC5 LINE L1 6693 6789 -1172 244 242 60 30 chr1 216833934 216834091 -65359573 + L1MD3 LINE L1 6900 7090 -952 1620 149 75 35 chr1 216834207 216834489 -65359175 - AluJb SINE Alu -19 293 1 790 104 0 0 chr1 216836258 216836364 -65357300 - MSTA LTR MaLR -322 106 1 399 305 16 8 chr1 216836875 216837003 -65356661 + L2 LINE L2 3185 3313 0 514 327 61 46 chr1 216837211 216837675 -65355989 - L3 LINE CR1 -104 1473 943 1296 91 156 0 chr1 216837675 216837874 -65355790 + MER30 DNA MER1_type 1 230 0 514 327 61 46 chr1 216837874 216837913 -65355751 - L3 LINE CR1 -634 943 906 21 0 0 0 chr1 216839028 216839049 -65354615 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 216840777 216840816 -65352848 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr1 216841748 216841779 -65351885 + AT_rich Low_complexity Low_complexity 1 31 0 643 114 35 0 chr1 216841949 216842063 -65351601 + CT-rich Low_complexity Low_complexity 1 118 0 1027 173 62 24 chr1 216842063 216842271 -65351393 - AluJo SINE Alu -13 299 84 284 304 118 60 chr1 216842494 216842616 -65351048 + L1ME3A LINE L1 5470 5584 -586 1157 201 0 31 chr1 216842616 216842840 -65350824 - MER20 DNA MER1_type -2 217 1 284 304 118 60 chr1 216842840 216843177 -65350487 + L1ME3A LINE L1 5584 5959 -211 333 0 0 0 chr1 216843177 216843214 -65350450 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 79 86 0 0 chr1 216843442 216843640 -65350024 + AT_rich Low_complexity Low_complexity 1 198 0 1600 186 9 59 chr1 216843863 216844201 -65349463 - MLT1B LTR MaLR 0 390 70 229 151 38 0 chr1 216844837 216844890 -65348774 + GA-rich Low_complexity Low_complexity 2 56 0 240 311 53 24 chr1 216845080 216845286 -65348378 + HAL1 LINE L1 945 1156 -1351 24 53 0 0 chr1 216845554 216845592 -65348072 + AT_rich Low_complexity Low_complexity 1 38 0 2096 96 31 0 chr1 216845641 216845932 -65347732 + AluSp SINE Alu 2 301 -12 1986 169 40 34 chr1 216846191 216846739 -65346925 - MLT2A2 LTR ERVL 0 554 1 429 290 53 18 chr1 216847614 216847783 -65345881 + MER5B DNA MER1_type 1 175 -3 352 253 26 98 chr1 216849034 216849228 -65344436 - L2 LINE L2 0 3313 3134 208 345 131 38 chr1 216849397 216849664 -65344000 - L2 LINE L2 -436 2878 2587 987 246 63 76 chr1 216850145 216850643 -65343021 - MLT2D LTR ERVL 0 520 2 183 80 0 0 chr1 216850665 216850690 -65342974 + (CA)n Simple_repeat Simple_repeat 2 26 0 943 228 15 92 chr1 216851350 216851753 -65341911 + MLT1A2 LTR MaLR 3 374 0 27 0 0 0 chr1 216851882 216851909 -65341755 + AT_rich Low_complexity Low_complexity 1 27 0 388 324 21 7 chr1 216852059 216852204 -65341460 + L2 LINE L2 2339 2485 -829 * 482 262 126 42 chr1 216852198 216852461 -65341203 + L2 LINE L2 3026 3310 -3 1952 142 0 0 chr1 216852893 216853198 -65340466 + AluSg SINE Alu 1 305 0 542 248 46 37 chr1 216853202 216853420 -65340244 - L1ME1 LINE L1 -18 6217 5998 * 3606 267 87 26 chr1 216853409 216854786 -65338878 - L1ME1 LINE L1 -894 5321 3821 249 33 0 0 chr1 216854786 216854816 -65338848 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 3606 267 87 26 chr1 216854816 216855116 -65338548 - L1ME1 LINE L1 -2394 3821 3541 1733 168 13 25 chr1 216855162 216855478 -65338186 + AluJb SINE Alu 1 312 0 2195 268 60 53 chr1 216855617 216857038 -65336626 - L1ME1 LINE L1 -3010 3205 1805 793 192 28 22 chr1 216857038 216857220 -65336444 - L1MC1 LINE L1 0 6333 6151 2195 268 60 53 chr1 216857220 216857587 -65336077 - L1ME1 LINE L1 -4410 1805 1442 902 259 5 0 chr1 216857595 216857796 -65335868 - L2 LINE L2 -527 2787 2586 799 241 42 101 chr1 216857813 216858170 -65335494 + MLT2C1 LTR ERVL 13 348 -49 252 77 0 0 chr1 216858217 216858256 -65335408 + (CA)n Simple_repeat Simple_repeat 2 40 0 230 191 0 0 chr1 216858259 216858301 -65335363 + MLT2C1 LTR ERVL 356 397 0 22 35 0 0 chr1 216858727 216858756 -65334908 + AT_rich Low_complexity Low_complexity 1 29 0 490 355 26 0 chr1 216859836 216859887 -65333777 + MIR SINE MIR 57 105 -157 360 0 0 0 chr1 216859887 216859927 -65333737 + (TG)n Simple_repeat Simple_repeat 2 41 0 490 355 26 0 chr1 216859927 216860064 -65333600 + MIR SINE MIR 105 250 -12 225 273 0 0 chr1 216860277 216860332 -65333332 + MIR SINE MIR 52 106 -102 199 229 21 0 chr1 216860480 216860528 -65333136 - L2 LINE L2 0 3272 3224 1431 259 74 24 chr1 216860639 216861526 -65332138 - L1ME2 LINE L1 -327 5837 4906 1384 254 141 24 chr1 216861520 216862370 -65331294 - L1ME2 LINE L1 -3044 3102 2153 * 374 229 152 102 chr1 216864967 216865282 -65328382 - MLT1I LTR MaLR -8 401 71 23 54 0 0 chr1 216865490 216865527 -65328137 + AT_rich Low_complexity Low_complexity 1 37 0 1481 238 68 29 chr1 216865795 216866279 -65327385 - MLT1D LTR MaLR 0 505 3 1519 280 19 17 chr1 216867393 216867935 -65325729 - L1MC1 LINE L1 -794 5352 4810 5286 163 21 2 chr1 216867935 216868251 -65325413 + L1MC1 LINE L1 5358 5667 -666 180 0 0 0 chr1 216868251 216868271 -65325393 + (CA)n Simple_repeat Simple_repeat 2 21 0 5286 163 21 2 chr1 216868271 216868856 -65324808 + L1MC1 LINE L1 5667 6276 -57 273 57 0 0 chr1 216870074 216870109 -65323555 + (CA)n Simple_repeat Simple_repeat 2 36 0 489 322 34 19 chr1 216870279 216870487 -65323177 + MIR SINE MIR 9 219 -43 21 0 0 0 chr1 216871892 216871913 -65321751 + AT_rich Low_complexity Low_complexity 1 21 0 201 344 0 0 chr1 216872010 216872074 -65321590 - L2 LINE L2 0 3272 3209 180 0 0 0 chr1 216872966 216872986 -65320678 + (TA)n Simple_repeat Simple_repeat 1 20 0 274 289 41 0 chr1 216873659 216873756 -65319908 + MIR3 SINE MIR 76 176 -32 1345 213 89 7 chr1 216874424 216874751 -65318913 + MLT1A1 LTR MaLR 1 364 -1 197 148 49 0 chr1 216874819 216874900 -65318764 + (TAG)n Simple_repeat Simple_repeat 2 86 0 314 248 34 60 chr1 216875449 216875566 -65318098 - MIR SINE MIR -56 206 93 280 297 88 11 chr1 216876544 216876635 -65317029 - MIR3 SINE MIR -9 199 102 217 368 38 19 chr1 216876999 216877105 -65316559 - L2 LINE L2 -44 3228 3121 217 369 123 24 chr1 216877304 216877759 -65315905 - L2 LINE L2 -385 2929 2430 1351 191 30 27 chr1 216878274 216878573 -65315091 + MER33 DNA MER1_type 22 321 -3 2100 95 0 0 chr1 216878686 216878960 -65314704 - AluSx SINE Alu -14 298 25 21 36 0 0 chr1 216879934 216879962 -65313702 + AT_rich Low_complexity Low_complexity 1 28 0 4301 116 54 62 chr1 216880486 216881903 -65311761 + pTR5 LTR ERV1 743 2438 0 505 240 140 12 chr1 216882147 216882318 -65311346 - MIR3 SINE MIR -13 195 3 21 0 0 0 chr1 216885492 216885513 -65308151 + AT_rich Low_complexity Low_complexity 1 21 0 2002 124 0 3 chr1 216885543 216885859 -65307805 - AluSq SINE Alu 0 317 3 233 149 50 35 chr1 217086580 217086721 -65106943 + (TATAA)n Simple_repeat Simple_repeat 5 147 0 257 231 44 15 chr1 217086729 217087009 -65106655 + (TA)n Simple_repeat Simple_repeat 1 288 0 2045 133 0 23 chr1 217087264 217087566 -65106098 + AluSx SINE Alu 1 295 -17 2413 62 0 10 chr1 217088588 217088894 -65104770 - AluY SINE Alu -8 303 1 778 301 65 4 chr1 217089099 217089345 -65104319 + MIR SINE MIR 2 262 0 199 258 16 16 chr1 217089842 217089904 -65103760 + L2 LINE L2 3209 3270 -2 258 299 78 110 chr1 217089998 217090152 -65103512 + MER91A DNA MER1_type 31 179 -17 2445 49 0 33 chr1 217090623 217090929 -65102735 - AluY SINE Alu -8 303 8 3347 57 2 20 chr1 217091189 217091645 -65102019 - LTR7 LTR ERV1 -2 448 1 2465 79 48 13 chr1 217091645 217092024 -65101640 - HERVH LTR ERV1 0 7713 7322 1377 122 18 9 chr1 217092022 217092243 -65101421 - HERVH LTR ERV1 -1894 5819 5597 * 4102 150 23 1 chr1 217092240 217092888 -65100776 - HERVH LTR ERV1 -2564 5149 4488 3249 119 6 6 chr1 217092890 217093392 -65100272 - HERVH LTR ERV1 -3720 3993 3492 933 128 20 0 chr1 217093382 217093530 -65100134 - HERVH LTR ERV1 -4423 3290 3140 * 20099 92 29 8 chr1 217093524 217096452 -65097212 - HERVH LTR ERV1 -4726 2987 1 762 98 0 31 chr1 217096454 217096590 -65097074 - LTR7 LTR ERV1 -2 448 1 31 68 0 0 chr1 217096617 217096676 -65096988 + AT_rich Low_complexity Low_complexity 1 59 0 1818 187 18 13 chr1 217098033 217098418 -65095246 - L1MB3 LINE L1 0 6183 5797 494 76 0 0 chr1 217098420 217098486 -65095178 - MLT2A2 LTR ERVL -2 451 386 1249 65 7 0 chr1 217098486 217098663 -65095001 - AluY SINE Alu 0 307 130 1487 245 72 60 chr1 217098666 217099168 -65094496 - MLT2B3 LTR ERVL -46 508 1 1645 159 59 48 chr1 217099169 217099541 -65094123 - L1MB3 LINE L1 -381 5799 5424 369 0 0 0 chr1 217099700 217099741 -65093923 + (CA)n Simple_repeat Simple_repeat 2 42 0 3984 163 51 6 chr1 217101528 217102228 -65091436 + MER44D DNA MER2_type 2 605 0 1102 293 93 28 chr1 217103739 217104200 -65089464 - L2 LINE L2 0 3313 2823 182 273 55 36 chr1 217104235 217104290 -65089374 + MIR SINE MIR 52 107 -155 948 202 47 126 chr1 217104778 217105184 -65088480 + MLT1A2 LTR MaLR 1 374 0 430 348 159 15 chr1 217105461 217105927 -65087737 + L2 LINE L2 2431 2963 -351 236 238 0 113 chr1 217106123 217106203 -65087461 + L2 LINE L2 3125 3195 -77 2172 103 7 7 chr1 217106980 217107282 -65086382 - AluSq SINE Alu -11 302 1 38 75 0 0 chr1 217108272 217108352 -65085312 + AT_rich Low_complexity Low_complexity 1 80 0 1753 301 49 56 chr1 217108658 217109802 -65083862 - L2 LINE L2 0 3313 2179 991 201 37 14 chr1 217109802 217110016 -65083648 - MER20 DNA MER1_type 0 219 1 1753 301 49 56 chr1 217110016 217110156 -65083508 - L2 LINE L2 -1134 2179 2039 546 307 80 64 chr1 217110264 217110619 -65083045 + L2 LINE L2 2669 3035 -278 380 304 49 49 chr1 217110879 217111083 -65082581 + L2 LINE L2 3109 3312 -1 1198 229 95 3 chr1 217111226 217111541 -65082123 + MER2 DNA MER2_type 1 344 0 22 35 0 0 chr1 217111769 217111798 -65081866 + AT_rich Low_complexity Low_complexity 1 29 0 2541 58 0 0 chr1 217111966 217112274 -65081390 - AluY SINE Alu -3 308 1 21 0 0 0 chr1 217112277 217112298 -65081366 + AT_rich Low_complexity Low_complexity 1 21 0 192 323 32 0 chr1 217112327 217112389 -65081275 - L2 LINE L2 -10 3262 3199 333 295 86 14 chr1 217112487 217112626 -65081038 - L2 LINE L2 -185 3087 2939 942 312 47 30 chr1 217114189 217114833 -65078831 - L2 LINE L2 -9 3304 2653 693 293 189 25 chr1 217114833 217115382 -65078282 - L2 LINE L2 -1070 2244 1606 1418 304 143 39 chr1 217115434 217116250 -65077414 - L2 LINE L2 -2376 938 38 262 241 120 37 chr1 217117110 217117218 -65076446 + L2 LINE L2 3197 3313 0 432 303 113 81 chr1 217117247 217117312 -65076352 + HAL1 LINE L1 1090 1151 -1356 2176 109 0 0 chr1 217117312 217117606 -65076058 - AluSc SINE Alu -15 294 1 432 303 113 81 chr1 217117606 217117828 -65075836 + HAL1 LINE L1 1151 1396 -1111 2207 116 7 0 chr1 217117828 217118131 -65075533 + AluY SINE Alu 1 305 -6 432 303 113 81 chr1 217118131 217118248 -65075416 + HAL1 LINE L1 1396 1508 -999 22 56 0 0 chr1 217118254 217118290 -65075374 + AT_rich Low_complexity Low_complexity 1 36 0 1336 191 14 30 chr1 217118290 217118792 -65074872 + L1P5 LINE L1 3832 5436 -720 273 126 30 0 chr1 217118776 217118848 -65074816 - L1MA3 LINE L1 -127 6177 6097 * 23 78 0 0 chr1 217118936 217118987 -65074677 + AT_rich Low_complexity Low_complexity 1 51 0 416 280 155 23 chr1 217119193 217119620 -65074044 + L1MC4 LINE L1 7314 7899 -143 21 0 0 0 chr1 217119722 217119743 -65073921 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 217119814 217119853 -65073811 + AT_rich Low_complexity Low_complexity 1 39 0 21 104 0 0 chr1 217121076 217121153 -65072511 + AT_rich Low_complexity Low_complexity 1 77 0 21 89 0 0 chr1 217122507 217122563 -65071101 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr1 217122910 217122934 -65070730 + AT_rich Low_complexity Low_complexity 1 24 0 359 226 7 22 chr1 217123395 217123532 -65070132 + CT-rich Low_complexity Low_complexity 2 136 0 815 266 22 61 chr1 217123823 217124101 -65069563 - LTR16A LTR ERVL -14 436 170 24 67 0 0 chr1 217124444 217124489 -65069175 + AT_rich Low_complexity Low_complexity 1 45 0 185 108 27 0 chr1 217125304 217125341 -65068323 + (TA)n Simple_repeat Simple_repeat 1 38 0 394 308 25 0 chr1 217125560 217125680 -65067984 + L2 LINE L2 3189 3311 -2 815 255 23 9 chr1 217126382 217126598 -65067066 - MER20 DNA MER1_type 0 219 1 207 0 0 0 chr1 217127100 217127123 -65066541 + (TG)n Simple_repeat Simple_repeat 2 24 0 2028 156 0 0 chr1 217128950 217129251 -65064413 + AluSx SINE Alu 1 301 -11 43 35 0 0 chr1 217129330 217129387 -65064277 + AT_rich Low_complexity Low_complexity 1 57 0 31287 31 4 0 chr1 217129626 217134176 -65059488 - L1PA3 LINE L1 -1 6154 1589 32 26 0 0 chr1 217134237 217134276 -65059388 + AT_rich Low_complexity Low_complexity 1 39 0 1715 265 73 36 chr1 217134299 217134850 -65058814 - MLT1E LTR MaLR -15 578 8 252 137 0 0 chr1 217135218 217135269 -65058395 + (A)n Simple_repeat Simple_repeat 1 51 0 293 366 42 7 chr1 217135896 217136038 -65057626 - MIR SINE MIR -82 180 34 208 250 0 0 chr1 217138334 217138378 -65055286 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 1224 179 32 37 chr1 217138994 217139240 -65054424 + AluJo SINE Alu 1 245 -67 590 309 0 6 chr1 217140220 217140382 -65053282 - MER5A DNA MER1_type 0 189 29 255 293 47 80 chr1 217140854 217141004 -65052660 + MIR SINE MIR 14 158 -104 749 326 118 20 chr1 217142111 217142733 -65050931 - L2 LINE L2 0 3313 2639 2545 112 22 0 chr1 217142733 217143099 -65050565 - THE1C LTR MaLR 0 375 2 11155 111 6 4 chr1 217143100 217144677 -65048987 - THE1C-int LTR MaLR 0 1580 1 1897 163 76 17 chr1 217144677 217145021 -65048643 - THE1B LTR MaLR 0 364 1 12449 198 53 9 chr1 217145021 217149019 -65044645 - L1PBa LINE L1 -903 5959 1799 7687 24 0 0 chr1 217149019 217149949 -65043715 - L1PA2 LINE L1 -1 6154 5225 10949 29 2 18 chr1 217149949 217151303 -65042361 + L1PA2 LINE L1 3917 5249 -897 3698 145 11 0 chr1 217151273 217151893 -65041771 - L1PBa LINE L1 -5054 1809 1205 * 365 212 0 0 chr1 217151896 217151962 -65041702 - L1PBa LINE L1 -5809 1054 989 * 2382 218 23 6 chr1 217151945 217152463 -65041201 - L1PBa LINE L1 -6336 527 1 26 30 0 0 chr1 217152648 217152681 -65040983 + AT_rich Low_complexity Low_complexity 1 33 0 456 19 0 0 chr1 217152848 217152901 -65040763 + (TG)n Simple_repeat Simple_repeat 2 54 0 1382 186 31 24 chr1 217153733 217154023 -65039641 + AluJo SINE Alu 3 294 -18 516 212 91 113 chr1 217154026 217154389 -65039275 - LTR37A LTR ERV1 -54 372 18 974 207 51 25 chr1 217154752 217154801 -65038863 + L1PB4 LINE L1 5643 5689 -467 1615 181 50 0 chr1 217154801 217155144 -65038520 - L1MA6 LINE L1 0 6300 5941 1335 142 48 15 chr1 217155144 217155431 -65038233 + L1MA6 LINE L1 5692 5976 -327 7544 32 3 2 chr1 217155604 217157283 -65036381 - L1PA4 LINE L1 0 6155 4476 2136 143 36 14 chr1 217157581 217157937 -65035727 - THE1B LTR MaLR 0 364 1 23 86 0 0 chr1 217158079 217158137 -65035527 + AT_rich Low_complexity Low_complexity 1 58 0 27 62 0 0 chr1 217158759 217158807 -65034857 + AT_rich Low_complexity Low_complexity 1 48 0 4904 224 42 18 chr1 217159530 217160241 -65033423 + L1MC2 LINE L1 4026 4719 -1625 315 49 0 0 chr1 217160241 217160282 -65033382 + (TATTG)n Simple_repeat Simple_repeat 1 41 0 4904 224 42 18 chr1 217160282 217161800 -65031864 + L1MC2 LINE L1 4719 6307 -37 4442 136 24 29 chr1 217161800 217162589 -65031075 - LTR1 LTR ERV1 0 785 1 4904 224 42 18 chr1 217162589 217162614 -65031050 + L1MC2 LINE L1 6307 6330 -14 22 35 0 0 chr1 217162819 217162848 -65030816 + AT_rich Low_complexity Low_complexity 1 29 0 371 293 160 19 chr1 217163189 217163401 -65030263 - MLT1J LTR MaLR -171 340 99 213 121 0 0 chr1 217164124 217164157 -65029507 + (A)n Simple_repeat Simple_repeat 1 33 0 2170 146 5 55 chr1 217164545 217164942 -65028722 - MER83B LTR ERV1 -1 377 1 183 80 0 0 chr1 217165373 217165398 -65028266 + (A)n Simple_repeat Simple_repeat 1 25 0 2652 188 49 67 chr1 217165411 217166085 -65027579 + LTR8 LTR ERV1 30 691 0 1519 156 7 46 chr1 217166316 217166599 -65027065 + PABL_B LTR ERV1 1 272 -395 240 94 0 0 chr1 217166601 217166633 -65027031 + PABL_A LTR ERV1 309 340 -320 445 31 0 31 chr1 217166865 217166930 -65026734 - L1PA16 LINE L1 0 6166 6104 1397 121 107 0 chr1 217166930 217167154 -65026510 - MER4A LTR ERV1 -1 663 416 1076 190 0 0 chr1 217167156 217167335 -65026329 - MER4A LTR ERV1 -131 533 355 2255 150 0 6 chr1 217167372 217167731 -65025933 - MER4A LTR ERV1 -307 357 1 2703 111 13 3 chr1 217167732 217168121 -65025543 - L1PA16 LINE L1 -59 6107 5715 935 287 89 43 chr1 217168121 217168453 -65025211 - MLT1J2 LTR MaLR -64 386 34 2252 119 59 0 chr1 217168453 217168790 -65024874 - LTR18A LTR ERVL 0 357 1 935 287 89 43 chr1 217168790 217168826 -65024838 - MLT1J2 LTR MaLR -416 34 1 21 36 0 0 chr1 217168985 217169013 -65024651 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 217169633 217169656 -65024008 + AT_rich Low_complexity Low_complexity 1 23 0 514 258 24 48 chr1 217170622 217170789 -65022875 - L2 LINE L2 -5 3308 3146 2198 149 3 3 chr1 217170920 217171282 -65022382 - L1PA13 LINE L1 0 6163 5802 564 289 88 29 chr1 217171435 217171885 -65021779 - L2 LINE L2 -1 3312 2713 2657 42 0 0 chr1 217172836 217173143 -65020521 + AluY SINE Alu 1 307 -4 5442 113 111 62 chr1 217175746 217176862 -65016802 + pTR5 LTR ERV1 742 2021 -417 338 224 31 20 chr1 217176866 217176964 -65016700 + LTR30 LTR ERV1 544 642 -80 1531 104 5 5 chr1 217176967 217177188 -65016476 + pTR5 LTR ERV1 172 392 -2046 321 388 89 24 chr1 217177338 217178094 -65015570 + L2 LINE L2 2252 3057 -215 262 331 35 71 chr1 217178490 217178659 -65015005 + MIR SINE MIR 9 171 -91 241 174 0 0 chr1 217178708 217178754 -65014910 - MER69 DNA AcHobo -47 2479 2434 473 255 125 5 chr1 217178878 217179094 -65014570 - MER69 DNA AcHobo -285 2241 2000 * 1184 292 89 14 chr1 217179082 217179575 -65014089 - MER69 DNA AcHobo -1958 568 39 242 322 0 11 chr1 217179591 217179681 -65013983 + MIR SINE MIR 168 256 -6 26 0 0 0 chr1 217179893 217179919 -65013745 + AT_rich Low_complexity Low_complexity 1 26 0 2016 112 157 19 chr1 217180145 217180470 -65013194 + MSTA LTR MaLR 1 386 -42 240 35 0 0 chr1 217180470 217180499 -65013165 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 2016 112 157 19 chr1 217180499 217180549 -65013115 + MSTA LTR MaLR 386 428 0 445 250 104 65 chr1 217180815 217181075 -65012589 - HAL1 LINE L1 -875 1632 1363 5309 130 39 9 chr1 217181418 217181772 -65011892 - L1PB1 LINE L1 -3 6864 6522 1038 110 0 0 chr1 217181772 217181927 -65011737 + (TA)n Simple_repeat Simple_repeat 2 156 0 5309 130 39 9 chr1 217181927 217182626 -65011038 - L1PB1 LINE L1 -345 6522 5779 9976 183 16 60 chr1 217182660 217184010 -65009654 - L1PB1 LINE L1 -1437 5425 4017 2274 110 3 0 chr1 217184010 217184320 -65009344 - AluSp SINE Alu -2 311 1 9976 183 16 60 chr1 217184320 217187040 -65006624 - L1PB1 LINE L1 -2845 4017 1494 323 281 102 59 chr1 217187081 217187337 -65006327 - HAL1 LINE L1 -1363 1144 878 2081 103 7 30 chr1 217189296 217189597 -65004067 - AluSq SINE Alu -15 298 5 1656 184 14 0 chr1 217190261 217190567 -65003097 + AluJo SINE Alu 1 310 0 672 201 8 22 chr1 217191571 217191705 -65001959 - FLAM_C SINE Alu 0 133 2 1069 232 0 5 chr1 217191971 217192191 -65001473 - MER20 DNA MER1_type 0 219 1 1433 169 48 38 chr1 217192586 217192876 -65000788 - AluJo SINE Alu -19 293 1 387 225 208 8 chr1 217193138 217193258 -65000406 + MIR SINE MIR 104 247 -15 214 369 0 0 chr1 217193259 217193343 -65000321 + L2 LINE L2 2174 2257 -1057 409 367 97 12 chr1 217193633 217193892 -64999772 + L2 LINE L2 2601 2881 -433 198 0 51 51 chr1 217194346 217194385 -64999279 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 369 109 0 0 chr1 217194386 217194441 -64999223 + (TCCCC)n Simple_repeat Simple_repeat 2 56 0 1456 214 11 3 chr1 217194441 217194726 -64998938 - AluJb SINE Alu -19 293 7 266 167 41 5 chr1 217194866 217194915 -64998749 - MLT1G1 LTR MaLR -5 590 544 423 0 0 0 chr1 217194915 217194962 -64998702 + (CA)n Simple_repeat Simple_repeat 2 48 0 266 167 41 5 chr1 217194962 217194988 -64998676 - MLT1G1 LTR MaLR -51 544 457 4219 202 29 15 chr1 217195034 217195978 -64997686 - L1MC2 LINE L1 -134 6628 5672 1955 166 6 6 chr1 217195979 217196310 -64997354 + MER39B LTR ERV1 300 630 -23 1553 253 69 19 chr1 217196319 217196913 -64996751 - L1MC2 LINE L1 -3118 3446 2823 962 250 87 67 chr1 217196927 217197447 -64996217 + LTR38B LTR ERV1 28 541 0 3730 233 62 35 chr1 217197495 217199168 -64994496 - L1MC2 LINE L1 -4841 1723 2 6901 53 28 0 chr1 217199408 217200321 -64993343 - L1PA5 LINE L1 -3 6151 5223 2058 156 120 5 chr1 217201161 217201545 -64992119 - MSTA LTR MaLR 0 428 1 200 333 10 52 chr1 217203263 217203359 -64990305 - MER5A DNA MER1_type -39 150 59 21 0 0 0 chr1 217204697 217204718 -64988946 + AT_rich Low_complexity Low_complexity 1 21 0 1802 233 79 4 chr1 217205166 217205634 -64988030 - LTR53 LTR ERVL -16 503 1 226 200 0 0 chr1 217207199 217207239 -64986425 - MLT1L LTR MaLR -430 185 146 428 217 78 53 chr1 217207669 217207913 -64985751 - L1ME4a LINE L1 -121 6000 5751 21 0 0 0 chr1 217208232 217208253 -64985411 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 217208366 217208387 -64985277 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr1 217209017 217209070 -64984594 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr1 217209505 217209534 -64984130 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 217209981 217210010 -64983654 + AT_rich Low_complexity Low_complexity 1 29 0 210 368 167 6 chr1 217210579 217210753 -64982911 + MIR3 SINE MIR 6 207 -1 237 203 17 59 chr1 217210829 217210947 -64982717 + (TA)n Simple_repeat Simple_repeat 1 113 0 345 287 0 8 chr1 217211075 217211204 -64982460 + (TA)n Simple_repeat Simple_repeat 2 129 0 296 309 94 27 chr1 217211610 217211759 -64981905 + MER112 DNA MER1_type 3 161 -99 186 43 0 0 chr1 217212604 217212627 -64981037 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 437 310 96 43 chr1 217212705 217212986 -64980678 - MLT1I LTR MaLR -16 393 98 27 62 0 0 chr1 217213536 217213584 -64980080 + AT_rich Low_complexity Low_complexity 1 48 0 2764 35 0 0 chr1 217214924 217215242 -64978422 + AluYb8 SINE Alu 1 318 0 1578 110 0 0 chr1 217215242 217215460 -64978204 + AluSg/x SINE Alu 80 297 -12 22 0 0 0 chr1 217215798 217215820 -64977844 + AT_rich Low_complexity Low_complexity 1 22 0 982 296 159 30 chr1 217217119 217217728 -64975936 + L2 LINE L2 2636 3309 -4 757 290 85 71 chr1 217217813 217218293 -64975371 + LTR33 LTR ERVL 33 519 -2 301 336 26 9 chr1 217218393 217218506 -64975158 + MIR3 SINE MIR 69 183 -25 273 261 0 14 chr1 217218673 217218742 -64974922 + MLT1H LTR MaLR 94 161 -388 533 335 67 39 chr1 217219119 217219552 -64974112 + L1MEc LINE L1 34 478 -5918 688 121 0 0 chr1 217219754 217219853 -64973811 - AluJ SINE Alu -16 296 198 723 203 0 0 chr1 217219873 217220006 -64973658 - AluJ SINE Alu -169 133 1 2448 138 3 0 chr1 217220072 217220435 -64973229 + THE1B LTR MaLR 1 364 0 867 276 84 70 chr1 217220437 217221150 -64972514 + L1MEc LINE L1 722 1450 -4946 1590 190 3 34 chr1 217221150 217221328 -64972336 - AluJb SINE Alu -1 311 146 2061 128 0 3 chr1 217221328 217221624 -64972040 - AluSx SINE Alu -17 295 1 1590 190 3 34 chr1 217221624 217221766 -64971898 - AluJb SINE Alu -166 146 1 867 276 84 70 chr1 217221766 217221906 -64971758 + L1MEc LINE L1 1450 1587 -4809 1102 253 56 30 chr1 217222152 217222623 -64971041 - MER39 LTR ERV1 0 707 93 287 279 39 39 chr1 217222609 217222713 -64970951 - LTR48B LTR ERV1 -538 106 3 * 26 0 0 0 chr1 217224390 217224416 -64969248 + AT_rich Low_complexity Low_complexity 1 26 0 200 246 18 0 chr1 217224821 217224878 -64968786 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 262 343 37 45 chr1 217225056 217225190 -64968474 - MER91A DNA MER1_type -40 156 24 387 323 173 18 chr1 217226866 217227086 -64966578 - MIR SINE MIR -6 256 3 217 211 13 53 chr1 217227601 217227677 -64965987 + T-rich Low_complexity Low_complexity 5 77 0 218 326 20 41 chr1 217227942 217228040 -64965624 - MIR SINE MIR -97 111 16 255 31 0 0 chr1 217228931 217228963 -64964701 + (CA)n Simple_repeat Simple_repeat 2 33 0 183 162 0 0 chr1 217228971 217229008 -64964656 + (TA)n Simple_repeat Simple_repeat 2 38 0 29 28 0 0 chr1 217230350 217230386 -64963278 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr1 217230603 217230623 -64963041 + (A)n Simple_repeat Simple_repeat 1 20 0 742 189 8 0 chr1 217231789 217231921 -64961743 - AluJo SINE Alu -178 134 2 277 331 41 35 chr1 217232772 217232893 -64960771 - L2 LINE L2 -8 3305 3181 2159 131 28 3 chr1 217232893 217233245 -64960419 + MER46B DNA MER2_type 1 236 0 277 331 41 35 chr1 217233245 217233268 -64960396 - L2 LINE L2 -132 3181 3160 29 0 0 0 chr1 217233276 217233305 -64960359 + AT_rich Low_complexity Low_complexity 1 29 0 739 311 91 66 chr1 217234180 217234698 -64958966 + MLT1H1 LTR MaLR 24 554 -1 22 35 0 0 chr1 217236341 217236370 -64957294 + AT_rich Low_complexity Low_complexity 1 29 0 229 375 104 11 chr1 217236497 217236777 -64956887 - L2 LINE L2 -579 2735 2430 21 0 0 0 chr1 217237347 217237368 -64956296 + AT_rich Low_complexity Low_complexity 1 21 0 307 370 48 46 chr1 217237653 217238180 -64955484 - L2 LINE L2 -345 2969 2445 449 278 91 23 chr1 217238450 217238626 -64955038 + MIR SINE MIR 9 196 -66 286 228 130 33 chr1 217239681 217239865 -64953799 - L1ME3A LINE L1 -219 5951 5750 2177 72 24 14 chr1 217240222 217240514 -64953150 + AluY SINE Alu 1 295 -16 323 326 44 0 chr1 217241000 217241135 -64952529 - LTR67 LTR ERVL -8 549 409 233 258 0 11 chr1 217241853 217241942 -64951722 + (TATG)n Simple_repeat Simple_repeat 4 91 0 2313 191 9 24 chr1 217241959 217242425 -64951239 + MLT1C LTR MaLR 1 459 -8 207 0 0 0 chr1 217242425 217242448 -64951216 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 309 109 0 0 chr1 217242447 217242493 -64951171 + (CA)n Simple_repeat Simple_repeat 1 46 0 1512 225 68 47 chr1 217242493 217243042 -64950622 - MLT2F LTR ERVL -58 605 1 27 0 0 0 chr1 217243465 217243492 -64950172 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr1 217243794 217243828 -64949836 + AT_rich Low_complexity Low_complexity 1 34 0 1124 107 23 0 chr1 217243830 217244007 -64949657 + L1PB3 LINE L1 5973 6153 -1 261 0 0 0 chr1 217244158 217244187 -64949477 + (CA)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 217244602 217244627 -64949037 + AT_rich Low_complexity Low_complexity 1 25 0 2662 143 18 9 chr1 217245266 217245721 -64947943 - L1PA15 LINE L1 -3 6162 5704 405 373 51 17 chr1 217245975 217246211 -64947453 - L3 LINE CR1 -65 1512 1269 354 242 42 11 chr1 217246934 217247029 -64946635 - LTR65 LTR ERV1 -12 657 560 760 248 74 41 chr1 217247269 217247511 -64946153 - LTR65 LTR ERV1 -255 414 165 504 183 0 0 chr1 217249366 217249448 -64944216 - Tigger5 DNA MER2_type 0 2323 2242 353 221 0 0 chr1 217249438 217249506 -64944158 + Tigger5 DNA MER2_type 2242 2309 -14 * 262 228 0 18 chr1 217249510 217249567 -64944097 - Tigger5 DNA MER2_type -2266 57 2 1200 231 62 7 chr1 217250622 217250929 -64942735 - MER21B LTR ERV1 -60 803 480 1114 255 24 73 chr1 217250928 217251300 -64942364 - MER21B LTR ERV1 -498 365 12 * 234 0 0 0 chr1 217251454 217251480 -64942184 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 181 380 93 9 chr1 217251494 217251602 -64942062 - L2 LINE L2 -9 3263 3147 350 239 45 34 chr1 217252444 217252532 -64941132 + MLT1I LTR MaLR 119 207 -202 1544 124 0 13 chr1 217253045 217253299 -64940365 - AluSg SINE Alu 0 308 58 492 280 184 14 chr1 217253548 217253766 -64939898 + MIR SINE MIR 1 255 -7 188 83 0 56 chr1 217253827 217253863 -64939801 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 255 306 60 0 chr1 217255279 217255413 -64938251 - L1ME LINE L1 -272 5849 5708 27 62 0 0 chr1 217255439 217255487 -64938177 + AT_rich Low_complexity Low_complexity 1 48 0 307 327 133 0 chr1 217255880 217256030 -64937634 - MIR SINE MIR -4 258 89 270 358 28 20 chr1 217258166 217258420 -64935244 + L1MC/D LINE L1 5574 5829 -1979 2039 106 35 0 chr1 217258607 217258889 -64934775 + AluSc SINE Alu 1 292 -17 225 65 0 0 chr1 217259867 217259898 -64933766 - HSMAR1 DNA Mariner 0 1287 1257 1346 130 6 4 chr1 217259907 217260124 -64933540 + MSTA LTR MaLR 212 426 -2 267 128 0 0 chr1 217260124 217260163 -64933501 - MADE1 DNA Mariner -41 39 1 264 292 177 0 chr1 217261307 217261403 -64932261 + L2 LINE L2 3200 3312 -1 318 224 143 20 chr1 217261590 217261688 -64931976 + MLT1C LTR MaLR 6 115 -352 1881 146 135 11 chr1 217261718 217262082 -64931582 + MSTA LTR MaLR 20 428 0 857 259 150 7 chr1 217262082 217262374 -64931290 + MLT1C LTR MaLR 134 467 0 280 335 18 12 chr1 217262374 217262541 -64931123 + L1MCc LINE L1 35 202 -6221 1427 269 88 39 chr1 217262875 217263694 -64929970 + L1MCc LINE L1 761 1621 -4887 2119 231 64 19 chr1 217263697 217264501 -64929163 + L1ME1 LINE L1 5102 5931 -235 641 273 181 4 chr1 217264503 217264774 -64928890 + L2 LINE L2 2995 3313 0 2078 93 23 17 chr1 217265312 217265639 -64928025 - AluSg SINE Alu 0 310 1 271 326 21 49 chr1 217266122 217266266 -64927398 - L3b LINE CR1 -89 1494 1355 1928 98 19 0 chr1 217266386 217266651 -64927013 - AluSx SINE Alu -14 298 29 1117 196 71 39 chr1 217267078 217267389 -64926275 - MER45B DNA AcHobo -7 1033 713 1159 348 81 39 chr1 217267527 217268265 -64925399 - MER45C DNA AcHobo -184 769 1 452 344 100 61 chr1 217268390 217269121 -64924543 + L2 LINE L2 1812 2588 -726 2059 171 5 14 chr1 217269121 217269489 -64924175 + MLT1A1 LTR MaLR 1 365 0 452 344 100 61 chr1 217269489 217269675 -64923989 + L2 LINE L2 2588 2765 -549 1739 181 114 53 chr1 217269712 217270186 -64923478 + MLT1D LTR MaLR 1 503 -2 298 133 0 0 chr1 217270813 217270858 -64922806 + MADE1 DNA Mariner 1 45 -35 1967 204 55 5 chr1 217271236 217271782 -64921882 + L1MCa LINE L1 18 1927 -4499 * 3752 245 14 25 chr1 217271756 217272231 -64921433 + L1MCa LINE L1 2263 2742 -3684 1814 141 94 24 chr1 217272231 217272571 -64921093 + THE1B LTR MaLR 1 364 0 11127 96 24 1 chr1 217272571 217274115 -64919549 + THE1B-int LTR MaLR 1 1580 0 1970 152 48 22 chr1 217274116 217274471 -64919193 + THE1B LTR MaLR 1 364 0 3752 245 14 25 chr1 217274471 217275480 -64918184 + L1MCa LINE L1 2740 3732 -2694 450 342 157 16 chr1 217275548 217276046 -64917618 - L2 LINE L2 -217 3096 2528 21 36 0 0 chr1 217276065 217276093 -64917571 + AT_rich Low_complexity Low_complexity 1 28 0 1560 204 3 0 chr1 217276093 217276382 -64917282 - AluJo SINE Alu -22 290 1 417 348 101 25 chr1 217276427 217276783 -64916881 - L2 LINE L2 -1102 2212 1830 28 0 0 0 chr1 217277545 217277573 -64916091 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 217277648 217277672 -64915992 + AT_rich Low_complexity Low_complexity 1 24 0 235 307 9 9 chr1 217277684 217277798 -64915866 + L1MEd LINE L1 961 1074 -5045 311 397 65 28 chr1 217277950 217278275 -64915389 - L2 LINE L2 -2881 433 97 23 0 0 0 chr1 217279178 217279201 -64914463 + AT_rich Low_complexity Low_complexity 1 23 0 313 101 49 9 chr1 217279206 217279267 -64914397 - MLT2B1 LTR ERVL 0 520 397 2182 158 59 97 chr1 217279291 217279799 -64913865 - MLT2B1 LTR ERVL -31 489 1 2334 49 0 13 chr1 217281353 217281657 -64912007 - AluY SINE Alu -11 300 1 298 319 97 0 chr1 217281834 217281947 -64911717 + L2 LINE L2 3178 3301 -12 29 47 0 0 chr1 217282278 217282321 -64911343 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 217284403 217284425 -64909239 + AT_rich Low_complexity Low_complexity 1 22 0 214 240 0 0 chr1 217285047 217285097 -64908567 + CT-rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr1 217285573 217285601 -64908063 + AT_rich Low_complexity Low_complexity 1 28 0 425 191 0 12 chr1 217286243 217286327 -64907337 - MLT1A1 LTR MaLR 0 365 283 1312 212 0 23 chr1 217286382 217286646 -64907018 - MLT1A1 LTR MaLR -85 280 23 213 94 0 0 chr1 217287358 217287390 -64906274 + (TG)n Simple_repeat Simple_repeat 2 33 0 182 264 11 81 chr1 217287653 217287740 -64905924 - L2 LINE L2 -3 3310 3230 47 53 0 0 chr1 217288629 217288704 -64904960 + AT_rich Low_complexity Low_complexity 1 75 0 345 125 0 0 chr1 217288807 217288863 -64904801 + (A)n Simple_repeat Simple_repeat 1 56 0 484 299 195 22 chr1 217289228 217289546 -64904118 + MLT1J LTR MaLR 110 482 -29 29 0 0 0 chr1 217290399 217290428 -64903236 + AT_rich Low_complexity Low_complexity 1 29 0 454 222 153 6 chr1 217292961 217293137 -64900527 - HAL1 LINE L1 -295 2212 2011 339 284 25 94 chr1 217293337 217293538 -64900126 + HAL1 LINE L1 1579 1765 -742 1916 87 40 4 chr1 217293912 217294188 -64899476 - L1PA8 LINE L1 -2 6170 5885 1847 158 27 0 chr1 217294826 217295118 -64898546 - AluSx SINE Alu -12 300 1 40 67 0 0 chr1 217295155 217295230 -64898434 + AT_rich Low_complexity Low_complexity 1 75 0 288 361 162 31 chr1 217295508 217296247 -64897417 + L3 LINE CR1 632 1467 -110 22 0 0 0 chr1 217296419 217296441 -64897223 + AT_rich Low_complexity Low_complexity 1 22 0 321 316 20 0 chr1 217296447 217296545 -64897119 - L2 LINE L2 -1 3312 3213 1655 246 11 46 chr1 217296559 217297080 -64896584 + MLT1D LTR MaLR 3 505 0 711 220 29 26 chr1 217297147 217297355 -64896309 + MLT1J2 LTR MaLR 1 242 -269 724 266 54 0 chr1 217297742 217297945 -64895719 - MER20 DNA MER1_type 0 219 6 2565 156 19 2 chr1 217298274 217298704 -64894960 - L1PA16 LINE L1 -2 6164 5728 675 185 0 0 chr1 217298704 217298823 -64894841 + L1PA16 LINE L1 5582 5700 -466 183 129 0 0 chr1 217298851 217298882 -64894782 + (GA)n Simple_repeat Simple_repeat 1 31 0 2211 100 0 0 chr1 217300004 217300294 -64893370 - AluSc SINE Alu -19 290 1 249 211 19 0 chr1 217300348 217300400 -64893264 + (CA)n Simple_repeat Simple_repeat 2 54 0 32 86 0 0 chr1 217304039 217304120 -64889544 + AT_rich Low_complexity Low_complexity 1 81 0 2118 128 0 0 chr1 217305792 217306089 -64887575 + AluSx SINE Alu 1 297 -15 581 283 120 37 chr1 217306153 217306535 -64887129 + L2 LINE L2 1607 2020 -1294 1512 214 100 12 chr1 217306638 217307058 -64886606 - MSTB2 LTR MaLR 0 457 1 440 282 48 38 chr1 217307058 217307267 -64886397 + MLT2F LTR ERVL 104 314 -349 357 350 117 41 chr1 217307273 217307598 -64886066 + L2 LINE L2 2740 3079 -234 7084 65 1 7 chr1 217307613 217308552 -64885112 - L1PA8 LINE L1 -3 6169 5237 390 223 119 104 chr1 217308646 217308839 -64884825 + MER58C DNA MER1_type 2 197 -18 21 71 0 0 chr1 217309545 217309587 -64884077 + AT_rich Low_complexity Low_complexity 1 42 0 189 94 0 0 chr1 217310553 217310585 -64883079 + (T)n Simple_repeat Simple_repeat 1 32 0 24 32 0 0 chr1 217310822 217310853 -64882811 + AT_rich Low_complexity Low_complexity 1 31 0 422 286 74 23 chr1 217310944 217311119 -64882545 - L1ME LINE L1 -466 5698 5515 208 271 0 0 chr1 217311123 217311182 -64882482 - MIR SINE MIR -65 197 139 259 244 83 119 chr1 217312415 217312583 -64881081 - MIR SINE MIR -21 241 80 215 154 26 0 chr1 217313094 217313133 -64880531 - MIR SINE MIR -26 236 197 685 287 57 10 chr1 217313288 217313497 -64880167 + MIR SINE MIR 39 257 -5 335 344 53 13 chr1 217313596 217313747 -64879917 + MIR3 SINE MIR 45 201 -7 24 53 0 0 chr1 217314758 217314796 -64878868 + AT_rich Low_complexity Low_complexity 1 38 0 787 236 29 0 chr1 217314938 217315112 -64878552 + MER58A DNA MER1_type 46 224 0 402 21 0 0 chr1 217315768 217315815 -64877849 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr1 217316471 217316499 -64877165 + AT_rich Low_complexity Low_complexity 1 28 0 217 315 11 22 chr1 217317245 217317334 -64876330 - MIR SINE MIR -109 153 66 374 310 76 25 chr1 217318544 217318741 -64874923 + MIR SINE MIR 53 259 -3 205 51 51 0 chr1 217320311 217320350 -64873314 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 470 255 0 0 chr1 217320700 217320806 -64872858 + L1MDa LINE L1 53 158 -6382 1490 223 34 21 chr1 217320917 217321302 -64872362 - MLT1B LTR MaLR 0 390 1 1359 276 38 38 chr1 217321420 217321629 -64872035 + L1MDa LINE L1 173 381 -6162 360 0 0 0 chr1 217321629 217321669 -64871995 + (CA)n Simple_repeat Simple_repeat 1 40 0 1359 276 38 38 chr1 217321669 217322169 -64871495 + L1MDa LINE L1 381 1229 -5314 321 253 84 0 chr1 217322193 217322276 -64871388 - L2 LINE L2 0 3272 3183 240 225 141 14 chr1 217322311 217322453 -64871211 + L1MDa LINE L1 1195 1354 -5186 351 0 0 0 chr1 217323220 217323259 -64870405 + (TG)n Simple_repeat Simple_repeat 1 39 0 25 51 0 0 chr1 217323260 217323299 -64870365 + AT_rich Low_complexity Low_complexity 1 39 0 320 276 51 73 chr1 217323413 217323561 -64870103 - L1ME LINE L1 -298 5823 5682 1507 206 50 21 chr1 217323561 217323940 -64869724 - MLT1B LTR MaLR 0 390 1 320 276 51 73 chr1 217323940 217324066 -64869598 - L1ME LINE L1 -439 5682 5555 384 263 91 57 chr1 217324442 217324617 -64869047 + MLT1I LTR MaLR 1 181 -228 286 331 90 0 chr1 217324665 217324798 -64868866 + MLT1I LTR MaLR 263 407 -2 37 69 0 0 chr1 217324848 217324920 -64868744 + AT_rich Low_complexity Low_complexity 1 72 0 765 226 45 36 chr1 217325418 217325727 -64867937 + L1MDa LINE L1 2424 2735 -3986 899 258 24 76 chr1 217325743 217326084 -64867580 - LTR41 LTR ERVL -14 759 437 798 263 19 19 chr1 217326084 217326297 -64867367 - MER58A DNA MER1_type 0 224 12 241 318 135 6 chr1 217326308 217326478 -64867186 - LTR41 LTR ERVL -329 444 253 2751 16 0 0 chr1 217326615 217326923 -64866741 + AluYa5 SINE Alu 1 308 -3 610 202 8 0 chr1 217327081 217327200 -64866464 - FLAM_A SINE Alu -15 127 8 25 51 0 0 chr1 217327219 217327258 -64866406 + AT_rich Low_complexity Low_complexity 1 39 0 230 81 27 0 chr1 217327326 217327363 -64866301 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 2611 179 10 8 chr1 217327411 217327914 -64865750 - L1PB2 LINE L1 -7 6144 5641 6696 181 41 15 chr1 217328014 217328500 -64865164 - L1PB2 LINE L1 -502 5649 5177 180 0 0 0 chr1 217328500 217328520 -64865144 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6696 181 41 15 chr1 217328520 217328853 -64864811 - L1PB2 LINE L1 -974 5177 4854 2046 134 0 7 chr1 217328853 217329158 -64864506 - AluSx SINE Alu -9 303 1 6696 181 41 15 chr1 217329158 217330165 -64863499 - L1PB2 LINE L1 -1297 4854 3787 458 76 0 0 chr1 217330172 217330238 -64863426 - AluSc SINE Alu -5 304 239 296 187 53 13 chr1 217330290 217330365 -64863299 - L1M4 LINE L1 -2194 3952 3875 21 0 0 0 chr1 217331148 217331169 -64862495 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 217331552 217331577 -64862087 + AT_rich Low_complexity Low_complexity 1 25 0 527 296 192 25 chr1 217331657 217331712 -64861952 - LTR50 LTR ERVL -32 763 719 2187 103 3 3 chr1 217331712 217332023 -64861641 + AluY SINE Alu 1 311 0 527 296 192 25 chr1 217332023 217332540 -64861124 - LTR50 LTR ERVL -76 719 1 2253 209 57 61 chr1 217333304 217333958 -64859706 - L1MC3 LINE L1 0 7785 7135 322 303 49 22 chr1 217333965 217334232 -64859432 - L1M4 LINE L1 -1761 4385 4112 22 56 0 0 chr1 217334396 217334432 -64859232 + AT_rich Low_complexity Low_complexity 1 36 0 375 182 0 0 chr1 217334547 217334624 -64859040 + (TG)n Simple_repeat Simple_repeat 2 78 0 339 321 65 16 chr1 217335039 217335223 -64858441 + L2 LINE L2 3121 3313 0 1612 183 107 25 chr1 217335748 217336179 -64857485 + LTR54B LTR ERV1 31 496 -2 40 59 0 0 chr1 217336520 217336588 -64857076 + AT_rich Low_complexity Low_complexity 1 68 0 2157 93 7 10 chr1 217336639 217336939 -64856725 - AluY SINE Alu -12 299 1 2545 161 56 4 chr1 217337531 217337992 -64855672 - MER31A LTR ERV1 0 485 1 22 0 0 0 chr1 217338120 217338142 -64855522 + AT_rich Low_complexity Low_complexity 1 22 0 3486 104 218 120 chr1 217338305 217339689 -64853975 - pTR5 LTR ERV1 0 2438 106 32 57 0 0 chr1 217339845 217339898 -64853766 + AT_rich Low_complexity Low_complexity 1 53 0 4795 198 51 16 chr1 217339898 217340987 -64852677 - L1MC3 LINE L1 -40 7745 6619 1854 187 5 22 chr1 217341381 217341750 -64851914 - MLT1A1 LTR MaLR -2 363 1 1739 177 0 31 chr1 217342139 217342461 -64851203 - AluJb SINE Alu 0 312 1 229 296 80 0 chr1 217343520 217343608 -64850056 + MIR SINE MIR 168 262 0 213 333 0 0 chr1 217343655 217343715 -64849949 - MIR SINE MIR -62 146 87 2189 109 3 0 chr1 217344093 217344395 -64849269 - AluSq SINE Alu -10 303 1 231 61 0 0 chr1 217346203 217346236 -64847428 + (TC)n Simple_repeat Simple_repeat 2 34 0 687 117 128 2 chr1 217346401 217346413 -64847251 - L1M LINE L1 -706 5415 5406 3914 154 19 4 chr1 217346413 217347115 -64846549 - L1PA16 LINE L1 -2 6164 5453 687 117 128 2 chr1 217347115 217347216 -64846448 - L1M LINE L1 -715 5406 5284 189 0 0 0 chr1 217347216 217347237 -64846427 + (TTG)n Simple_repeat Simple_repeat 1 21 0 687 117 128 2 chr1 217347237 217347264 -64846400 - L1M LINE L1 -837 5284 5262 216 86 0 0 chr1 217347715 217347750 -64845914 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1954 141 0 7 chr1 217347752 217348036 -64845628 - AluSx SINE Alu -30 282 1 363 106 0 0 chr1 217348360 217348426 -64845238 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 751 205 35 32 chr1 217348553 217348779 -64844885 + MLT1E2 LTR MaLR 7 235 -270 570 120 51 0 chr1 217348779 217348896 -64844768 + G-rich Low_complexity Low_complexity 5 127 0 370 336 108 28 chr1 217349092 217349380 -64844284 + L2 LINE L2 2773 3083 -189 1339 114 85 0 chr1 217349447 217349658 -64844006 + MER30 DNA MER1_type 2 230 0 183 237 0 0 chr1 217349721 217349759 -64843905 + L2 LINE L2 3259 3296 -17 28 29 0 0 chr1 217349994 217350029 -64843635 + AT_rich Low_complexity Low_complexity 1 35 0 1004 279 52 49 chr1 217352345 217352548 -64841116 + L2 LINE L2 2356 2557 -756 2093 101 4 0 chr1 217352548 217352849 -64840815 - AluSx SINE Alu 0 305 4 1004 279 52 49 chr1 217352849 217353295 -64840369 + L2 LINE L2 2557 3134 -179 906 267 45 4 chr1 217353298 217353545 -64840119 - MIR SINE MIR 0 262 6 403 312 28 7 chr1 217353570 217353711 -64839953 + L2 LINE L2 3160 3303 -10 27 0 0 0 chr1 217354192 217354219 -64839445 + AT_rich Low_complexity Low_complexity 1 27 0 1329 128 110 59 chr1 217354862 217355152 -64838512 - L1MB1 LINE L1 -472 5696 5392 2244 190 35 22 chr1 217355152 217355641 -64838023 + L1MB1 LINE L1 5673 6167 -1 26 50 0 0 chr1 217356366 217356406 -64837258 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr1 217356585 217356608 -64837056 + AT_rich Low_complexity Low_complexity 1 23 0 17351 25 0 0 chr1 217356966 217359790 -64833874 - L1PA3 LINE L1 0 6155 3333 204 246 82 16 chr1 217360878 217360939 -64832725 - L2 LINE L2 -54 3259 3195 1129 223 21 0 chr1 217361782 217362065 -64831599 - L1MA4 LINE L1 -5 6295 6007 2022 153 42 14 chr1 217362267 217362621 -64831043 + THE1B LTR MaLR 1 364 0 10921 108 8 13 chr1 217362621 217363048 -64830616 + THE1B-int LTR MaLR 1 429 -1151 1974 137 13 3 chr1 217363048 217363347 -64830317 - AluSx SINE Alu -10 302 1 10921 108 8 13 chr1 217363347 217364508 -64829156 + THE1B-int LTR MaLR 429 1580 0 2368 123 37 0 chr1 217364508 217364859 -64828805 + THE1B LTR MaLR 1 364 0 321 279 21 68 chr1 217366603 217366793 -64826871 + HAL1b LINE L1 223 403 -945 1191 263 68 91 chr1 217367268 217368330 -64825334 + L1MC5 LINE L1 6477 7519 -442 26 64 0 0 chr1 217368555 217368602 -64825062 + AT_rich Low_complexity Low_complexity 1 47 0 276 53 0 0 chr1 217369157 217369195 -64824469 + (TG)n Simple_repeat Simple_repeat 1 38 0 189 354 24 24 chr1 217369760 217369842 -64823822 - MIR SINE MIR -155 107 26 217 333 122 24 chr1 217370065 217370188 -64823476 + L2 LINE L2 3138 3272 0 378 284 79 42 chr1 217370319 217370509 -64823155 - MIR SINE MIR -4 258 62 21 0 0 0 chr1 217371311 217371332 -64822332 + AT_rich Low_complexity Low_complexity 1 21 0 253 271 43 0 chr1 217373149 217373219 -64820445 + L2 LINE L2 3240 3312 -1 3154 199 45 35 chr1 217375637 217376389 -64817275 - L1MB7 LINE L1 -20 6662 5903 225 141 61 0 chr1 217376400 217376499 -64817165 + (TA)n Simple_repeat Simple_repeat 2 106 0 1383 252 158 21 chr1 217376580 217377200 -64816464 - L1MB7 LINE L1 -748 5896 5192 303 232 14 0 chr1 217377203 217377272 -64816392 + L1M4 LINE L1 5021 5090 -1056 972 253 39 43 chr1 217377314 217378336 -64815328 - L1MB7 LINE L1 -2507 4137 3113 1883 163 0 3 chr1 217378336 217378636 -64815028 + AluSx SINE Alu 1 299 -13 972 253 39 43 chr1 217378636 217378861 -64814803 - L1MB7 LINE L1 -3531 3113 2889 1486 209 26 6 chr1 217378861 217379201 -64814463 - L1MA6 LINE L1 -3 6297 5951 972 253 39 43 chr1 217379201 217379615 -64814049 - L1MB7 LINE L1 -3755 2889 2242 232 219 0 114 chr1 217379652 217379757 -64813907 - L1MC4 LINE L1 -1337 6705 6613 1388 241 74 31 chr1 217379768 217380187 -64813477 - L1MB7 LINE L1 -6101 441 5 2155 257 30 12 chr1 217381482 217382082 -64811582 - MER90 LTR ERV1 0 614 4 2649 103 3 14 chr1 217383271 217383639 -64810025 - THE1B LTR MaLR 0 364 1 195 42 0 0 chr1 217383648 217383672 -64809992 + (CA)n Simple_repeat Simple_repeat 2 25 0 314 189 43 18 chr1 217383675 217383839 -64809825 + (TA)n Simple_repeat Simple_repeat 2 169 0 535 171 13 6 chr1 217383841 217383995 -64809669 - LTR37B LTR ERV1 -210 258 7 5612 178 45 11 chr1 217384476 217386709 -64806955 - L1MA4A LINE L1 0 7005 4698 * 12097 217 44 26 chr1 217386703 217389588 -64804076 - L1PA15 LINE L1 -2 6814 3983 183 42 0 0 chr1 217389588 217389612 -64804052 + (CAA)n Simple_repeat Simple_repeat 1 24 0 12097 217 44 26 chr1 217389612 217390170 -64803494 - L1PA15 LINE L1 -2833 3983 3437 2099 112 3 3 chr1 217390170 217390465 -64803199 - AluY SINE Alu -16 295 1 12097 217 44 26 chr1 217390465 217391267 -64802397 - L1PA15 LINE L1 -3379 3437 2651 2014 153 16 47 chr1 217391267 217391654 -64802010 + THE1C LTR MaLR 1 375 0 12097 217 44 26 chr1 217391654 217393005 -64800659 - L1PA15 LINE L1 -4165 2651 1111 9960 224 24 60 chr1 217393441 217398324 -64795340 - L1MA4A LINE L1 -2135 4713 10 756 256 87 5 chr1 217398676 217398883 -64794781 + MER58A DNA MER1_type 1 224 0 6695 185 12 39 chr1 217399186 217401633 -64792031 - L1PA15 LINE L1 -21 6144 3750 227 260 31 31 chr1 217401818 217401945 -64791719 - L1MEc LINE L1 -5194 1202 1076 21 36 0 0 chr1 217402065 217402093 -64791571 + AT_rich Low_complexity Low_complexity 1 28 0 203 179 0 0 chr1 217402179 217402218 -64791446 + T-rich Low_complexity Low_complexity 1 39 0 368 291 52 100 chr1 217402307 217402578 -64791086 + LTR33A LTR ERVL 156 413 -110 1107 248 92 92 chr1 217402634 217403187 -64790477 - MER90 LTR ERV1 -22 553 1 2141 132 0 0 chr1 217403895 217404199 -64789465 + AluSx SINE Alu 1 304 -8 269 296 0 23 chr1 217404968 217405056 -64788608 + MIR SINE MIR 70 155 -107 232 281 0 0 chr1 217405307 217405364 -64788300 - L2 LINE L2 -2 3311 3255 243 0 0 0 chr1 217405517 217405544 -64788120 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 1996 99 3 14 chr1 217405553 217405845 -64787819 - AluY SINE Alu -22 289 1 1346 134 60 0 chr1 217406759 217406975 -64786689 + MER30 DNA MER1_type 1 229 -1 1526 104 17 4 chr1 217407031 217407272 -64786392 - L1MA2 LINE L1 0 6304 6061 31 0 0 0 chr1 217407441 217407472 -64786192 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr1 217407519 217407559 -64786105 + AT_rich Low_complexity Low_complexity 1 40 0 183 156 0 0 chr1 217409800 217409832 -64783832 + (CATA)n Simple_repeat Simple_repeat 4 35 0 294 123 71 7 chr1 217410798 217410952 -64782712 + (TA)n Simple_repeat Simple_repeat 1 164 0 236 324 169 0 chr1 217410965 217411101 -64782563 + MIR SINE MIR 102 260 -2 385 284 128 21 chr1 217411252 217411495 -64782169 + L2 LINE L2 1626 1894 -1420 734 306 50 17 chr1 217411502 217411799 -64781865 + L2 LINE L2 2066 2372 -942 302 236 16 57 chr1 217412099 217412171 -64781493 + Charlie4 DNA MER1_type 1816 1883 -78 2385 123 48 0 chr1 217412171 217412529 -64781135 - THE1C LTR MaLR 0 375 1 302 236 16 57 chr1 217412529 217412579 -64781085 + Charlie4 DNA MER1_type 1883 1933 -28 627 237 0 0 chr1 217412613 217412752 -64780912 - FLAM_A SINE Alu -3 139 1 2556 7 0 0 chr1 217413134 217413414 -64780250 + AluYa5 SINE Alu 30 309 -2 485 185 42 101 chr1 217414572 217414761 -64778903 + LTR52 LTR ERVL 3 180 -241 526 192 87 91 chr1 217414860 217415068 -64778596 + LTR52 LTR ERVL 198 404 -17 354 337 28 39 chr1 217415267 217415445 -64778219 + MER5A DNA MER1_type 12 187 -2 283 57 29 43 chr1 217415821 217415891 -64777773 + (TA)n Simple_repeat Simple_repeat 1 69 0 1907 106 38 20 chr1 217416054 217416347 -64777317 + AluSc SINE Alu 1 298 -11 363 292 37 31 chr1 217416910 217417071 -64776593 - L1M4 LINE L1 -953 5193 5032 564 278 45 28 chr1 217417120 217417407 -64776257 - L1M4 LINE L1 -1296 4850 4564 792 256 16 39 chr1 217417409 217417714 -64775950 - L1M4 LINE L1 -3174 2972 2675 1670 35 0 0 chr1 217417716 217417914 -64775750 + L1PA4 LINE L1 5956 6153 -2 230 274 28 19 chr1 217417948 217418054 -64775610 - L1M4 LINE L1 -3702 2444 2338 292 362 36 15 chr1 217418405 217418601 -64775063 + LTR16C LTR ERVL 214 413 -78 2953 152 61 6 chr1 217418791 217419316 -64774348 + MER41C LTR ERV1 1 554 0 386 192 27 0 chr1 217419657 217419730 -64773934 + LTR16C LTR ERVL 417 491 0 1062 317 65 24 chr1 217419751 217420164 -64773500 - LTR16A LTR ERVL 0 450 21 31 0 0 0 chr1 217420200 217420231 -64773433 + AT_rich Low_complexity Low_complexity 1 31 0 1860 149 7 3 chr1 217420937 217421226 -64772438 + AluSx SINE Alu 5 294 -18 3274 175 41 2 chr1 217421255 217421883 -64771781 + MER39B LTR ERV1 1 653 0 1210 212 69 114 chr1 217422322 217422873 -64770791 + LTR49 LTR ERV1 1 526 -69 26 0 0 0 chr1 217422927 217422953 -64770711 + AT_rich Low_complexity Low_complexity 1 26 0 337 257 95 92 chr1 217422994 217423352 -64770312 + LTR49-int LTR ERV1 38 396 -5935 1477 141 190 7 chr1 217423354 217423644 -64770020 - MSTA LTR MaLR 0 428 86 792 193 59 10 chr1 217423644 217423862 -64769802 - MER61D LTR ERV1 0 749 271 497 171 20 8 chr1 217424241 217424349 -64769315 - MSTA LTR MaLR -260 115 1 367 245 36 65 chr1 217424731 217424913 -64768751 + LTR49-int LTR ERV1 1554 2192 -4071 357 183 263 50 chr1 217424981 217425243 -64768421 + MER31-int LTR ERV1 1100 1417 -3519 33 73 0 0 chr1 217425732 217425800 -64767864 + AT_rich Low_complexity Low_complexity 1 68 0 459 244 82 72 chr1 217425807 217426098 -64767566 + MER31-int LTR ERV1 1686 1979 -2957 355 242 116 89 chr1 217426116 217426409 -64767255 + MER31-int LTR ERV1 2707 3007 -1873 4461 209 59 39 chr1 217426501 217427793 -64765871 + MER31-int LTR ERV1 3930 5247 -1084 465 205 189 8 chr1 217427853 217427975 -64765689 + MER31-int LTR ERV1 5225 5368 -963 610 167 79 24 chr1 217428092 217428218 -64765446 - MSTC LTR MaLR 0 428 296 464 126 32 4 chr1 217428251 217428263 -64765401 - MSTC LTR MaLR -324 104 94 2095 115 0 0 chr1 217428263 217428550 -64765114 + AluSg SINE Alu 5 291 -19 464 126 32 4 chr1 217428550 217428627 -64765037 - MSTC LTR MaLR -334 94 7 2559 263 95 47 chr1 217428645 217430161 -64763503 - MSTC-int LTR MaLR -15 1511 2 2214 204 17 0 chr1 217430163 217430584 -64763080 - MSTC LTR MaLR 0 428 1 444 195 19 94 chr1 217430834 217430993 -64762671 - MER104 DNA Tc2 -3 177 31 332 133 17 0 chr1 217431774 217431834 -64761830 + (CA)n Simple_repeat Simple_repeat 1 61 0 769 362 111 43 chr1 217432794 217433678 -64759986 + L2 LINE L2 87 1030 -2284 249 197 158 40 chr1 217433679 217433755 -64759909 + MER67D LTR ERV1 1 85 -429 1901 122 3 49 chr1 217433766 217434070 -64759594 - AluSq SINE Alu -23 290 1 786 306 46 44 chr1 217434071 217434506 -64759158 + L2 LINE L2 1984 2419 -895 2118 260 80 16 chr1 217434510 217435438 -64758226 - L1ME1 LINE L1 -49 6117 5135 1936 234 131 22 chr1 217435433 217436252 -64757412 + L1ME1 LINE L1 4203 5110 -1036 * 1389 187 59 42 chr1 217436985 217437332 -64756332 - MER47B DNA MER2_type -2 416 1 338 312 40 8 chr1 217437482 217437607 -64756057 - L2 LINE L2 -5 3308 3180 23 0 0 0 chr1 217437806 217437829 -64755835 + AT_rich Low_complexity Low_complexity 1 23 0 370 285 34 69 chr1 217439291 217439541 -64754123 - L1ME LINE L1 -447 5723 5482 1797 113 0 0 chr1 217439541 217439812 -64753852 - AluY SINE Alu 0 305 35 370 285 34 69 chr1 217439812 217439851 -64753813 - L1ME LINE L1 -688 5482 5443 417 307 114 21 chr1 217439959 217440400 -64753264 - L1ME LINE L1 -798 5444 4960 225 297 27 27 chr1 217440405 217440449 -64753215 + (TA)n Simple_repeat Simple_repeat 1 44 -104 2797 10 0 0 chr1 217440449 217440759 -64752905 - AluYb8 SINE Alu -8 310 1 225 297 27 27 chr1 217440759 217440862 -64752802 + (TA)n Simple_repeat Simple_repeat 43 148 0 23 33 0 0 chr1 217441139 217441169 -64752495 + AT_rich Low_complexity Low_complexity 1 30 0 288 172 0 0 chr1 217441542 217441600 -64752064 + T-rich Low_complexity Low_complexity 1 58 0 297 175 63 0 chr1 217442005 217442068 -64751596 - L1MA9 LINE L1 0 6312 6246 608 346 130 22 chr1 217443018 217443911 -64749753 + L2 LINE L2 2304 3313 0 194 290 146 25 chr1 217443920 217444100 -64749564 + MIR SINE MIR 4 209 -53 * 412 315 33 27 chr1 217444096 217444280 -64749384 - MIR SINE MIR 0 262 78 25 0 0 0 chr1 217444511 217444536 -64749128 + AT_rich Low_complexity Low_complexity 1 25 0 2153 148 11 19 chr1 217444558 217444936 -64748728 - THE1C LTR MaLR 0 375 1 26 50 0 0 chr1 217445146 217445186 -64748478 + AT_rich Low_complexity Low_complexity 1 40 0 529 242 129 52 chr1 217445982 217446176 -64747488 - MIR SINE MIR -42 220 12 214 292 73 88 chr1 217446625 217446817 -64746847 - L2 LINE L2 -1 3312 3124 185 154 26 0 chr1 217446851 217446890 -64746774 + GA-rich Low_complexity Low_complexity 4 43 0 2202 82 0 30 chr1 217447479 217447783 -64745881 - AluY SINE Alu -16 295 1 458 91 13 0 chr1 217448889 217448966 -64744698 + (CA)n Simple_repeat Simple_repeat 2 79 0 2365 168 29 2 chr1 217449795 217450212 -64743452 + MSTA LTR MaLR 1 428 0 1298 257 62 73 chr1 217450354 217450898 -64742766 - MLT1G LTR MaLR 0 590 53 21 36 0 0 chr1 217451013 217451041 -64742623 + AT_rich Low_complexity Low_complexity 1 28 0 1382 190 70 50 chr1 217452378 217452736 -64740928 - MLT1A1 LTR MaLR 0 365 1 12504 183 23 14 chr1 217453268 217456410 -64737254 + L1PA16 LINE L1 1 3068 -3781 631 258 58 26 chr1 217456422 217456697 -64736967 - L1P LINE L1 -3388 2758 2476 961 154 31 10 chr1 217456709 217456895 -64736769 + MER30 DNA MER1_type 36 230 0 599 160 24 0 chr1 217456896 217457021 -64736643 + L1PA16 LINE L1 3062 3189 -3660 * 4799 180 43 37 chr1 217457018 217457151 -64736513 + L1PA16 LINE L1 4898 5029 -1840 2026 92 64 0 chr1 217457151 217457432 -64736232 - AluSp SINE Alu -12 301 3 4799 180 43 37 chr1 217457432 217459137 -64734527 + L1PA16 LINE L1 5029 6720 -149 1900 148 7 0 chr1 217459137 217459435 -64734229 + AluSx SINE Alu 12 311 -1 4799 180 43 37 chr1 217459435 217459577 -64734087 + L1PA16 LINE L1 6720 6860 -9 296 321 85 0 chr1 217459781 217459887 -64733777 + MIR SINE MIR 37 151 -111 238 121 17 17 chr1 217459940 217459998 -64733666 + (CA)n Simple_repeat Simple_repeat 2 59 0 241 190 17 0 chr1 217460178 217460236 -64733428 + CT-rich Low_complexity Low_complexity 1 59 0 40 21 0 0 chr1 217460533 217460580 -64733084 + AT_rich Low_complexity Low_complexity 1 47 0 388 284 45 0 chr1 217461100 217461188 -64732476 + MLT1K LTR MaLR 72 163 -425 2047 222 33 21 chr1 217461253 217461767 -64731897 - L1MA9 LINE L1 -38 6274 5755 240 310 0 0 chr1 217461902 217461973 -64731691 + MLT1K LTR MaLR 378 448 -140 23 78 0 0 chr1 217462011 217462062 -64731602 + AT_rich Low_complexity Low_complexity 1 51 0 725 212 6 18 chr1 217462677 217462842 -64730822 - MER3 DNA MER1_type -87 122 7 232 303 95 9 chr1 217462858 217462966 -64730698 + MER5A DNA MER1_type 4 133 -56 26 50 0 0 chr1 217463438 217463478 -64730186 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 217463570 217463592 -64730072 + AT_rich Low_complexity Low_complexity 1 22 0 962 262 49 117 chr1 217463963 217464673 -64728991 - MER21B LTR ERV1 -149 714 53 333 283 65 0 chr1 217464898 217464990 -64728674 + MER63A DNA MER1_type 113 210 0 1401 169 11 23 chr1 217465673 217465934 -64727730 + MLT2D LTR ERVL 1 258 -156 2143 196 80 2 chr1 217465934 217466358 -64727306 - LTR32 LTR ERVL 0 471 15 661 182 63 44 chr1 217466357 217466516 -64727148 + MLT2D LTR ERVL 253 414 0 * 373 343 27 0 chr1 217468039 217468185 -64725479 - MER5B DNA MER1_type -12 166 17 262 265 15 15 chr1 217468215 217468283 -64725381 + MLT2D LTR ERVL 178 245 -169 252 362 26 13 chr1 217468444 217468596 -64725068 - MER5A DNA MER1_type -9 180 27 1240 62 91 6 chr1 217468695 217468871 -64724793 + AluY SINE Alu 120 310 -1 22 23 0 45 chr1 217468904 217468922 -64724742 + AT_rich Low_complexity Low_complexity 1 18 -24 2195 65 0 65 chr1 217468922 217469232 -64724432 + AluY SINE Alu 2 291 -20 22 23 0 45 chr1 217469232 217469257 -64724407 + AT_rich Low_complexity Low_complexity 18 42 0 208 122 49 0 chr1 217469322 217469363 -64724301 + (TTAA)n Simple_repeat Simple_repeat 2 44 0 225 311 7 39 chr1 217469364 217469569 -64724095 + CT-rich Low_complexity Low_complexity 1 198 0 7090 56 0 0 chr1 217471381 217472377 -64721287 - L1PA7 LINE L1 0 6154 5158 454 73 176 0 chr1 217473240 217473308 -64720356 + MADE1 DNA Mariner 1 80 0 22 56 0 0 chr1 217473433 217473469 -64720195 + AT_rich Low_complexity Low_complexity 1 36 0 300 333 18 9 chr1 217474643 217474757 -64718907 + MIR3 SINE MIR 83 197 -11 409 279 178 4 chr1 217475298 217475545 -64718119 - MER113 DNA MER1_type? -112 409 120 183 333 45 0 chr1 217475744 217475810 -64717854 + MIR SINE MIR 86 154 -108 1278 151 46 0 chr1 217477311 217477570 -64716094 + L1MA7 LINE L1 6020 6290 -1 257 375 26 7 chr1 217478941 217479093 -64714571 + L2 LINE L2 2215 2369 -945 2307 93 0 3 chr1 217479950 217480260 -64713404 - AluSc SINE Alu 0 309 1 201 182 0 0 chr1 217481639 217481672 -64711992 + T-rich Low_complexity Low_complexity 1 33 0 267 222 0 48 chr1 217481758 217481821 -64711843 - 7SK RNA RNA -1 192 133 513 169 0 134 chr1 217481868 217482010 -64711654 - 7SK RNA RNA -68 125 3 23 0 0 0 chr1 217482084 217482107 -64711557 + AT_rich Low_complexity Low_complexity 1 23 0 445 350 15 10 chr1 217482233 217482436 -64711228 - L3 LINE CR1 -9 1568 1365 1729 183 12 21 chr1 217483604 217483977 -64709687 - MER47B DNA MER2_type 0 418 1 29 0 0 0 chr1 217485999 217486028 -64707636 + AT_rich Low_complexity Low_complexity 1 29 0 691 326 45 4 chr1 217486725 217486967 -64706697 - MIR SINE MIR -10 252 1 24 0 0 0 chr1 217487504 217487528 -64706136 + AT_rich Low_complexity Low_complexity 1 24 0 2160 72 0 10 chr1 217487624 217487914 -64705750 + AluY SINE Alu 1 287 -24 189 0 0 0 chr1 217487922 217487943 -64705721 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 220 329 118 49 chr1 217489678 217489924 -64703740 + L2 LINE L2 1867 2129 -1185 29 60 0 0 chr1 217490791 217490841 -64702823 + AT_rich Low_complexity Low_complexity 1 50 0 215 323 154 46 chr1 217490907 217491167 -64702497 + L2 LINE L2 2210 2497 -817 1135 244 60 36 chr1 217491176 217491512 -64702152 - MLT1A2 LTR MaLR 0 374 31 708 272 53 26 chr1 217491773 217492001 -64701663 + MIR SINE MIR 29 262 0 21 0 0 0 chr1 217492763 217492784 -64700880 + AT_rich Low_complexity Low_complexity 1 21 0 26 82 0 0 chr1 217493953 217494014 -64699650 + AT_rich Low_complexity Low_complexity 1 61 0 189 188 0 0 chr1 217494320 217494352 -64699312 + MIR SINE MIR 229 260 -2 287 317 109 72 chr1 217494754 217495101 -64698563 - L2 LINE L2 0 3313 2954 269 339 181 0 chr1 217495343 217495470 -64698194 + MER5A DNA MER1_type 10 159 -30 242 205 90 26 chr1 217496014 217496092 -64697572 - L2 LINE L2 -7 3265 3183 198 0 0 0 chr1 217498696 217498718 -64694946 + (CAA)n Simple_repeat Simple_repeat 3 24 0 198 195 0 0 chr1 217499203 217499244 -64694420 + MIR SINE MIR 187 227 -35 797 215 35 95 chr1 217499411 217499695 -64693969 + MLT1D LTR MaLR 1 267 -238 203 291 0 0 chr1 217500918 217500973 -64692691 + (TA)n Simple_repeat Simple_repeat 1 55 0 695 301 19 5 chr1 217501026 217501242 -64692422 + MIR SINE MIR 11 229 -33 204 40 0 0 chr1 217501738 217501763 -64691901 + (GA)n Simple_repeat Simple_repeat 1 25 0 318 348 59 15 chr1 217502769 217502904 -64690760 - MIR SINE MIR -97 165 25 189 247 49 37 chr1 217502917 217502998 -64690666 + L2 LINE L2 1729 1810 -1504 423 0 0 0 chr1 217503122 217503169 -64690495 + (CA)n Simple_repeat Simple_repeat 2 48 0 292 344 8 8 chr1 217503979 217504101 -64689563 + Tigger8 DNA MER2_type 10 131 -535 3118 199 63 14 chr1 217504143 217504855 -64688809 - L1MB5 LINE L1 -157 6017 5271 370 186 12 36 chr1 217506526 217506693 -64686971 + (TA)n Simple_repeat Simple_repeat 2 164 0 21 57 0 0 chr1 217506771 217506806 -64686858 + AT_rich Low_complexity Low_complexity 1 35 0 6735 107 32 14 chr1 217507527 217508566 -64685098 + MER11C LTR ERVK 1 1057 -14 1992 143 0 3 chr1 217509785 217510127 -64683537 + AluSx SINE Alu 1 341 0 469 344 28 21 chr1 217511637 217511919 -64681745 - HERVL LTR ERVL -797 2759 2476 332 286 32 14 chr1 217512013 217512189 -64681475 - HERVL LTR ERVL -2475 3010 2911 473 329 39 30 chr1 217512392 217512626 -64681038 - HERVL LTR ERVL -3629 2056 1821 228 156 22 0 chr1 217512812 217512857 -64680807 + (CCTTG)n Simple_repeat Simple_repeat 2 47 0 211 27 27 27 chr1 217515506 217515543 -64678121 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3019 249 26 43 chr1 217515671 217516389 -64677275 - L1 LINE L1 -772 5374 4678 671 218 0 0 chr1 217516389 217516522 -64677142 + FLAM_C SINE Alu 1 133 0 3019 249 26 43 chr1 217516522 217516838 -64676826 - L1 LINE L1 -1468 4678 4358 358 302 47 0 chr1 217516965 217517071 -64676593 - MIR3 SINE MIR 0 208 98 25 0 0 0 chr1 217517166 217517191 -64676473 + AT_rich Low_complexity Low_complexity 1 25 0 211 284 54 54 chr1 217517292 217517366 -64676298 - L2 LINE L2 -37 3235 3162 265 114 45 11 chr1 217517390 217517478 -64676186 + (TA)n Simple_repeat Simple_repeat 2 92 0 1018 98 0 0 chr1 217517478 217517610 -64676054 - AluSg/x SINE Alu -17 295 164 3247 185 24 50 chr1 217517711 217518027 -64675637 + L1MB2 LINE L1 5432 5755 -416 1979 179 71 15 chr1 217518027 217518436 -64675228 + MSTB1 LTR MaLR 1 432 0 3247 185 24 50 chr1 217518436 217518877 -64674787 + L1MB2 LINE L1 5755 6169 -2 714 212 88 48 chr1 217520332 217520582 -64673082 - MLT1C LTR MaLR -207 260 1 839 328 97 43 chr1 217520920 217521159 -64672505 + L1MEc LINE L1 1913 2138 -4077 2185 122 0 13 chr1 217521159 217521470 -64672194 + AluSc SINE Alu 1 307 -2 839 328 97 43 chr1 217521470 217522577 -64671087 + L1MEc LINE L1 2138 3286 -2929 401 237 79 68 chr1 217522577 217522843 -64670821 + L1MEc LINE L1 3732 4000 -2215 304 278 155 10 chr1 217522914 217523108 -64670556 + L1MEc LINE L1 4202 4423 -1792 1880 212 88 2 chr1 217523108 217523527 -64670137 - MLT1C LTR MaLR -12 455 1 2231 121 3 0 chr1 217523646 217523953 -64669711 + AluSx SINE Alu 5 312 0 4357 58 0 18 chr1 217524170 217524742 -64668922 + L1PA5 LINE L1 5593 6154 0 24 0 0 0 chr1 217524751 217524775 -64668889 + AT_rich Low_complexity Low_complexity 1 24 0 4414 162 21 5 chr1 217525156 217525969 -64667695 - L1MA4 LINE L1 -169 6131 5306 219 125 0 0 chr1 217526061 217526101 -64667563 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 11873 209 17 21 chr1 217526115 217528974 -64664690 - L1MA4 LINE L1 -847 5299 2459 1682 220 11 6 chr1 217528975 217529334 -64664330 + L1M3f LINE L1 5 365 -4963 902 270 82 28 chr1 217529338 217529986 -64663678 + L1MEc LINE L1 1005 1627 -4799 413 340 13 13 chr1 217530357 217530507 -64663157 - L2 LINE L2 -14 3299 3150 26 64 0 0 chr1 217534265 217534312 -64659352 + AT_rich Low_complexity Low_complexity 1 47 0 849 328 117 20 chr1 217534469 217534878 -64658786 - LTR16C LTR ERVL 0 491 43 3462 160 10 15 chr1 217535392 217536261 -64657403 - L1MA3 LINE L1 -461 7263 6399 10005 170 32 44 chr1 217536309 217540641 -64653023 - L1MA3 LINE L1 -1962 5603 1340 1047 332 21 16 chr1 217540643 217541023 -64652641 - LTR16C LTR ERVL -26 465 84 200 240 27 0 chr1 217541207 217541282 -64652382 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 35 0 0 chr1 217542269 217542298 -64651366 + AT_rich Low_complexity Low_complexity 1 29 0 1865 117 11 0 chr1 217542327 217542591 -64651073 - AluSc SINE Alu -9 300 34 1145 207 46 103 chr1 217542591 217542958 -64650706 - MSTD LTR MaLR -6 390 45 32 57 0 0 chr1 217543462 217543515 -64650149 + AT_rich Low_complexity Low_complexity 1 53 0 358 138 11 35 chr1 217543563 217543650 -64650014 + CT-rich Low_complexity Low_complexity 1 85 0 306 0 0 0 chr1 217543682 217543716 -64649948 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr1 217544285 217544308 -64649356 + AT_rich Low_complexity Low_complexity 1 23 0 2060 143 0 0 chr1 217544410 217544718 -64648946 - AluSx SINE Alu -4 308 1 333 147 0 40 chr1 217544727 217544802 -64648862 - L1MC2 LINE L1 -1 6343 6272 782 292 0 20 chr1 217544906 217545108 -64648556 - MER20 DNA MER1_type -20 199 2 346 295 76 35 chr1 217546166 217546299 -64647365 - L1M4c LINE L1 -4551 1833 1707 195 42 0 0 chr1 217546299 217546323 -64647341 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 346 295 76 35 chr1 217546323 217546477 -64647187 - L1M4c LINE L1 -4677 1707 1534 813 149 0 0 chr1 217546883 217547004 -64646660 + FLAM_C SINE Alu 1 121 -22 213 94 0 0 chr1 217547004 217547036 -64646628 + (TAA)n Simple_repeat Simple_repeat 2 33 0 205 303 151 46 chr1 217547768 217547920 -64645744 - MIR SINE MIR -65 197 30 363 199 27 14 chr1 217547952 217548098 -64645566 + GA-rich Low_complexity Low_complexity 3 150 0 1414 199 10 36 chr1 217549617 217549924 -64643740 + AluJb SINE Alu 1 299 -3 436 304 117 18 chr1 217550291 217550462 -64643202 - MIR SINE MIR -72 190 3 1039 35 0 42 chr1 217550561 217550703 -64642961 - AluY SINE Alu -1 310 175 986 49 0 49 chr1 217551071 217551213 -64642451 - AluY SINE Alu -2 309 175 279 0 0 0 chr1 217551826 217551857 -64641807 + (CA)n Simple_repeat Simple_repeat 1 31 0 212 337 50 80 chr1 217552329 217552629 -64641035 - L2 LINE L2 -1135 2179 1889 2356 195 48 17 chr1 217553518 217554097 -64639567 - L1MC3 LINE L1 0 7785 7189 1356 173 4 29 chr1 217554109 217554381 -64639283 - MER2 DNA MER2_type 0 345 81 34 42 0 0 chr1 217554403 217554451 -64639213 + AT_rich Low_complexity Low_complexity 1 48 0 525 222 106 141 chr1 217554479 217554678 -64638986 - MLT1C LTR MaLR -7 498 290 24 0 0 0 chr1 217555030 217555054 -64638610 + AT_rich Low_complexity Low_complexity 1 24 0 552 250 130 21 chr1 217555560 217555752 -64637912 + MLT1D LTR MaLR 293 505 0 451 137 23 15 chr1 217555763 217555894 -64637770 + (TA)n Simple_repeat Simple_repeat 2 133 0 30 69 0 0 chr1 217556859 217556917 -64636747 + AT_rich Low_complexity Low_complexity 1 58 0 337 278 144 0 chr1 217556962 217557142 -64636522 + L1M4 LINE L1 2703 2908 -3238 331 217 130 0 chr1 217558141 217558233 -64635431 - L1MC3 LINE L1 -3 7782 7679 8049 238 32 25 chr1 217558349 217560970 -64632694 - L1MC3 LINE L1 -380 7405 4762 * 8918 200 17 6 chr1 217560953 217563211 -64630453 - L1P5 LINE L1 -563 5588 3305 5910 80 9 68 chr1 217563211 217564089 -64629575 - LTR12 LTR ERV1 0 826 1 6478 98 2 2 chr1 217564089 217564983 -64628681 - HERV9 LTR ERV1 0 8399 7506 676 100 16 198 chr1 217564988 217565357 -64628307 - Harlequin LTR ERV1 -5755 1141 840 * 6277 88 13 11 chr1 217565324 217566217 -64627447 - Harlequin LTR ERV1 -3425 4974 4080 14507 107 7 12 chr1 217566224 217569103 -64624561 - Harlequin LTR ERV1 -5260 3139 190 3349 149 40 1 chr1 217569203 217570261 -64623403 - L1PBa LINE L1 -3397 3465 2368 1218 244 145 23 chr1 217570471 217570984 -64622680 + MLT1E1 LTR MaLR 1 546 -80 362 211 0 0 chr1 217571166 217571242 -64622422 + MLT1E1 LTR MaLR 518 593 0 2087 139 0 0 chr1 217571300 217571602 -64622062 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr1 217571877 217571898 -64621766 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 217572471 217572503 -64621161 + AT_rich Low_complexity Low_complexity 1 32 0 348 307 85 67 chr1 217572595 217572952 -64620712 + MLT1J2 LTR MaLR 29 390 -19 226 250 10 10 chr1 217574594 217574694 -64618970 + L1MC4 LINE L1 6997 7096 -946 * 350 242 0 11 chr1 217574676 217574767 -64618897 + L1MC4a LINE L1 7147 7236 -572 489 82 24 12 chr1 217574830 217574915 -64618749 + (GAGAA)n Simple_repeat Simple_repeat 5 90 0 1188 288 106 12 chr1 217574924 217575563 -64618101 + L1ME LINE L1 138 836 -5234 228 304 13 0 chr1 217575566 217575645 -64618019 - L1MEc LINE L1 -4730 1666 1587 700 284 134 23 chr1 217575655 217576084 -64617580 + MLT1D LTR MaLR 10 467 0 565 261 37 28 chr1 217576086 217576304 -64617360 + MLT1D-int LTR MaLR 4 223 -1148 1086 224 31 0 chr1 217576312 217576540 -64617124 + MLT1A1 LTR MaLR 130 364 -1 237 83 0 0 chr1 217576563 217576599 -64617065 + (TG)n Simple_repeat Simple_repeat 1 36 0 358 291 102 0 chr1 217576640 217576767 -64616897 + L2 LINE L2 3173 3312 -1 210 333 113 7 chr1 217577337 217577487 -64616177 - MIR SINE MIR -85 177 12 1755 167 7 0 chr1 217578089 217578377 -64615287 + AluSx SINE Alu 1 290 -22 243 394 21 38 chr1 217579961 217580197 -64613467 + L2 LINE L2 2828 3059 -213 439 336 65 9 chr1 217580280 217580494 -64613170 + MLT1I LTR MaLR 182 407 -2 285 75 0 0 chr1 217580699 217580739 -64612925 + (GA)n Simple_repeat Simple_repeat 2 41 0 1144 194 13 63 chr1 217580798 217581097 -64612567 + L1MC3 LINE L1 7481 7764 -21 23 0 0 0 chr1 217581183 217581206 -64612458 + AT_rich Low_complexity Low_complexity 1 23 0 32 86 0 0 chr1 217581318 217581399 -64612265 + AT_rich Low_complexity Low_complexity 1 81 0 21 57 0 0 chr1 217582028 217582063 -64611601 + AT_rich Low_complexity Low_complexity 1 35 0 8141 201 20 39 chr1 217582903 217584938 -64608726 + L1PB4 LINE L1 3288 5284 -862 282 217 14 0 chr1 217584960 217585029 -64608635 - LTR43 LTR ERV1 -20 582 513 923 202 60 32 chr1 217585138 217585386 -64608278 - LTR43 LTR ERV1 -137 465 211 4226 163 15 27 chr1 217585771 217586191 -64607473 + L1PB4 LINE L1 5358 5765 -391 1619 176 29 13 chr1 217586191 217586322 -64607342 + AluJb SINE Alu 1 128 -184 661 29 80 0 chr1 217586322 217586459 -64607205 + (TA)n Simple_repeat Simple_repeat 2 149 0 1619 176 29 13 chr1 217586459 217586634 -64607030 + AluJb SINE Alu 128 312 0 4226 163 15 27 chr1 217586634 217587022 -64606642 + L1PB4 LINE L1 5765 6156 0 401 280 75 35 chr1 217587166 217587366 -64606298 + L2 LINE L2 3106 3313 0 358 341 149 22 chr1 217587368 217587691 -64605973 + L2 LINE L2 1864 2227 -1087 21 0 0 0 chr1 217587715 217587736 -64605928 + AT_rich Low_complexity Low_complexity 1 21 0 530 266 19 0 chr1 217587872 217588030 -64605634 - L1PBa LINE L1 -6697 166 6 205 294 0 71 chr1 217588053 217588138 -64605526 - MER5A DNA MER1_type -110 79 1 1204 236 46 18 chr1 217588816 217589143 -64604521 - MLT1A1 LTR MaLR -11 354 19 11595 94 26 10 chr1 217589655 217591288 -64602376 - Charlie3 DNA MER1_type -4 2706 1048 973 329 0 43 chr1 217591299 217591621 -64602043 + L1M4b LINE L1 218 525 -6334 6226 123 70 20 chr1 217591656 217592642 -64601022 - Charlie3 DNA MER1_type -1670 1040 6 22 35 0 0 chr1 217592793 217592822 -64600842 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr1 217593004 217593057 -64600607 + AT_rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr1 217593077 217593122 -64600542 + AT_rich Low_complexity Low_complexity 1 45 0 2407 273 98 43 chr1 217593451 217594308 -64599356 + L1M4b LINE L1 40 943 -5916 308 311 60 25 chr1 217594382 217594617 -64599047 + L1M4b LINE L1 2584 2826 -4312 263 111 42 14 chr1 217594618 217594690 -64598974 + (TA)n Simple_repeat Simple_repeat 1 74 0 26 50 0 0 chr1 217594818 217594858 -64598806 + AT_rich Low_complexity Low_complexity 1 40 0 21 95 0 0 chr1 217594951 217595014 -64598650 + AT_rich Low_complexity Low_complexity 1 63 0 57 85 0 0 chr1 217595208 217595349 -64598315 + AT_rich Low_complexity Low_complexity 1 141 0 193 65 0 65 chr1 217595349 217595395 -64598269 + (TTTAA)n Simple_repeat Simple_repeat 1 43 0 28 95 0 0 chr1 217595405 217595489 -64598175 + AT_rich Low_complexity Low_complexity 1 84 0 22 80 0 0 chr1 217595650 217595700 -64597964 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr1 217596102 217596127 -64597537 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chr1 217596179 217596215 -64597449 + AT_rich Low_complexity Low_complexity 1 36 0 210 355 16 0 chr1 217596894 217596956 -64596708 - MIR3 SINE MIR -133 75 13 23 0 0 0 chr1 217597336 217597359 -64596305 + AT_rich Low_complexity Low_complexity 1 23 0 212 184 0 0 chr1 217597394 217597432 -64596232 - L2 LINE L2 -4 3309 3272 1185 223 81 18 chr1 217598178 217598461 -64595203 - AluJb SINE Alu -1 301 1 26 64 0 0 chr1 217598487 217598534 -64595130 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr1 217600497 217600525 -64593139 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 217600646 217600675 -64592989 + AT_rich Low_complexity Low_complexity 1 29 0 6019 92 5 5 chr1 217600675 217601522 -64592142 - L1PA8 LINE L1 0 6172 5326 2537 121 0 0 chr1 217601816 217602179 -64591485 - THE1B LTR MaLR -1 363 1 2926 219 74 9 chr1 217602816 217603465 -64590199 - MER21B LTR ERV1 -1 862 172 2351 166 22 9 chr1 217603465 217603912 -64589752 + L1MA6 LINE L1 5848 6300 0 922 242 154 0 chr1 217603912 217604197 -64589467 + L1M4 LINE L1 4700 5028 -1118 913 171 53 0 chr1 217604200 217604352 -64589312 - MER21B LTR ERV1 -703 160 1 423 170 10 30 chr1 217604564 217604664 -64589000 + L1MA6 LINE L1 6203 6300 0 997 228 154 0 chr1 217604664 217604949 -64588715 + L1 LINE L1 4700 5028 -1118 853 191 53 0 chr1 217604952 217605104 -64588560 - MER21B LTR ERV1 -703 160 1 288 102 0 0 chr1 217605982 217606031 -64587633 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 150 0 0 chr1 217606031 217606071 -64587593 + (GA)n Simple_repeat Simple_repeat 1 40 0 26 50 0 0 chr1 217607105 217607145 -64586519 + AT_rich Low_complexity Low_complexity 1 40 0 932 331 92 19 chr1 217607214 217607993 -64585671 + L2 LINE L2 2476 3309 -4 390 305 30 0 chr1 217608006 217608137 -64585527 + MLT1L LTR MaLR 140 274 -341 229 318 59 0 chr1 217608333 217608418 -64585246 + MLT1K LTR MaLR 481 570 -18 186 48 24 48 chr1 217608449 217608491 -64585173 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 3715 86 4 30 chr1 217608493 217609052 -64584612 - L1PA13 LINE L1 -18 6145 5602 577 306 68 48 chr1 217609146 217609456 -64584208 + MLT1H LTR MaLR 204 519 -30 2537 118 8 0 chr1 217611018 217611382 -64582282 - THE1C LTR MaLR -8 367 1 9798 132 31 3 chr1 217611382 217612919 -64580745 - THE1C-int LTR MaLR 0 1580 1 2002 134 73 22 chr1 217612919 217613276 -64580388 - THE1C LTR MaLR 0 375 1 12503 166 62 22 chr1 217614412 217616960 -64576704 + L1M1 LINE L1 16 3434 -4131 278 50 25 0 chr1 217616960 217617000 -64576664 + (CA)n Simple_repeat Simple_repeat 2 42 0 12503 166 62 22 chr1 217617000 217617081 -64576583 + L1M1 LINE L1 3434 3510 -4055 21 0 0 0 chr1 217619019 217619040 -64574624 + AT_rich Low_complexity Low_complexity 1 21 0 1400 239 149 8 chr1 217619999 217620493 -64573171 - MLT1E1 LTR MaLR 0 654 72 742 155 30 40 chr1 217620590 217620765 -64572899 + MER6 DNA MER2_type -39 865 0 281 205 128 34 chr1 217620765 217620874 -64572790 - MER53 DNA DNA -69 120 1 303 326 107 6 chr1 217621856 217622034 -64571630 + L1MEc LINE L1 50 245 -6151 2061 109 10 10 chr1 217673162 217673465 -64520199 + AluSg SINE Alu 1 303 -7 276 212 51 102 chr1 217673471 217673589 -64520075 - MER63 DNA MER1_type -85 751 14 513 291 155 41 chr1 217673706 217674074 -64519590 - L1MEc LINE L1 -4260 2136 1727 494 230 62 37 chr1 217674097 217674258 -64519406 - MER58B DNA MER1_type -1 340 176 459 293 75 86 chr1 217674288 217674660 -64519004 - L1MEc LINE L1 -5400 996 629 1246 225 48 18 chr1 217676823 217677156 -64516508 + MER2 DNA MER2_type 2 344 0 2112 150 39 66 chr1 217677184 217677624 -64516040 + MSTA LTR MaLR 1 428 0 4519 236 114 44 chr1 217677640 217677850 -64515814 + L1M4b LINE L1 10 204 -6651 1670 167 43 35 chr1 217677850 217678222 -64515442 - THE1C LTR MaLR 0 375 1 4519 236 114 44 chr1 217678222 217679912 -64513752 + L1M4b LINE L1 204 2024 -4831 1746 123 16 4 chr1 217679935 217680322 -64513342 - LTR23 LTR ERV1 -11 426 1 292 370 0 24 chr1 217681425 217681552 -64512112 - MIR SINE MIR -65 143 20 5081 68 26 19 chr1 217682049 217682367 -64511297 - L1PA7 LINE L1 -2 6152 5838 2787 3 0 0 chr1 217682367 217682671 -64510993 - AluYa5 SINE Alu -7 304 1 5081 68 26 19 chr1 217682671 217683053 -64510611 - L1PA7 LINE L1 -316 5838 5447 1925 230 110 15 chr1 217683320 217683822 -64509842 + MER101B LTR ERV1 1 444 -30 38 0 0 0 chr1 217683933 217683971 -64509693 + AT_rich Low_complexity Low_complexity 1 38 0 339 121 0 0 chr1 217683984 217684042 -64509622 + (TA)n Simple_repeat Simple_repeat 1 58 0 1908 150 13 53 chr1 217684047 217684426 -64509238 - Tigger2a DNA MER2_type -70 364 1 240 354 31 0 chr1 217684746 217684842 -64508822 + MIR SINE MIR 53 151 -111 21 0 0 0 chr1 217685041 217685062 -64508602 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 217685531 217685555 -64508109 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr1 217685674 217685699 -64507965 + AT_rich Low_complexity Low_complexity 1 25 0 775 256 12 0 chr1 217686747 217686915 -64506749 - FAM SINE Alu -5 170 1 21 0 0 0 chr1 217691159 217691180 -64502484 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 217692813 217692834 -64500830 + AT_rich Low_complexity Low_complexity 1 21 0 537 332 24 48 chr1 217692931 217693307 -64500357 + HAL1b LINE L1 186 552 -796 21 0 0 0 chr1 217693619 217693640 -64500024 + AT_rich Low_complexity Low_complexity 1 21 0 232 188 29 0 chr1 217693828 217693897 -64499767 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 214 188 29 58 chr1 217694185 217694254 -64499410 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 1393 168 4 17 chr1 217694255 217694487 -64499177 - AluJb SINE Alu -16 296 68 504 185 22 0 chr1 217694513 217694605 -64499059 - AluJ/FLAM SINE Alu -216 96 3 1318 237 76 35 chr1 217695756 217696190 -64497474 - LTR45B LTR ERV1 -4 485 34 32 43 0 0 chr1 217696740 217696786 -64496878 + AT_rich Low_complexity Low_complexity 1 46 0 1815 170 106 23 chr1 217696791 217697186 -64496478 - MSTA LTR MaLR 0 428 1 392 242 20 0 chr1 217697523 217697622 -64496042 + LTR43 LTR ERV1 176 276 -326 291 285 16 16 chr1 217697756 217697879 -64495785 + LTR43 LTR ERV1 199 321 -281 2466 161 21 7 chr1 217698064 217698486 -64495178 + MSTA LTR MaLR 1 428 0 8252 187 37 9 chr1 217698486 217700092 -64493572 + MSTA-int LTR MaLR 1 1651 0 1735 383 0 0 chr1 217700092 217700520 -64493144 + MSTA LTR MaLR 1 428 0 1076 220 16 90 chr1 217700556 217700988 -64492676 - L1MC3 LINE L1 -1465 6320 5921 3394 238 150 36 chr1 217701000 217701985 -64491679 + MER52A LTR ERV1 1 1097 -658 226 309 87 24 chr1 217702022 217702148 -64491516 + LTR28 LTR ERV1 848 981 -39 * 597 274 0 50 chr1 217702116 217702295 -64491369 + LTR28 LTR ERV1 851 1020 0 27 49 0 0 chr1 217702656 217702697 -64490967 + AT_rich Low_complexity Low_complexity 1 41 0 339 350 6 49 chr1 217702997 217703160 -64490504 - L2 LINE L2 -428 2886 2731 24 0 0 0 chr1 217703438 217703462 -64490202 + AT_rich Low_complexity Low_complexity 1 24 0 677 202 0 16 chr1 217703472 217703596 -64490068 - FLAM_A SINE Alu -11 122 1 3550 15 0 0 chr1 217704179 217704672 -64488992 - L1PA2 LINE L1 -492 5663 5171 4173 22 0 0 chr1 217704672 217705155 -64488509 + L1PA2 LINE L1 5668 6155 0 1600 192 4 0 chr1 217705161 217705437 -64488227 - AluJb SINE Alu -31 281 5 2484 136 45 9 chr1 217706042 217706461 -64487203 - MER57B LTR ERV1 0 434 1 408 305 99 25 chr1 217706721 217707003 -64486661 - L1M4 LINE L1 -3622 2524 2222 28 29 0 0 chr1 217708576 217708611 -64485053 + AT_rich Low_complexity Low_complexity 1 35 0 407 260 31 55 chr1 217708960 217709087 -64484577 + L2 LINE L2 3190 3313 0 27 29 0 0 chr1 217709631 217709665 -64483999 + AT_rich Low_complexity Low_complexity 1 34 0 180 111 0 0 chr1 217710053 217710080 -64483584 + (TA)n Simple_repeat Simple_repeat 2 28 0 31 44 0 0 chr1 217710279 217710324 -64483340 + AT_rich Low_complexity Low_complexity 1 45 0 448 246 18 9 chr1 217710983 217711093 -64482571 + MLT1A1 LTR MaLR 1 111 -254 1303 269 67 26 chr1 217711140 217711634 -64482030 + LTR38 LTR ERV1 43 556 0 1226 203 59 4 chr1 217711640 217711877 -64481787 + MLT1A1 LTR MaLR 116 365 0 523 169 17 17 chr1 217712747 217712865 -64480799 + L1MCa LINE L1 962 1079 -5347 1305 210 91 19 chr1 217712873 217713245 -64480419 + L1MC3 LINE L1 6702 7100 -685 257 293 61 0 chr1 217713246 217713328 -64480336 + MLT1F1 LTR MaLR 39 125 -442 773 208 0 2 chr1 217713328 217713482 -64480182 + L1MC3 LINE L1 7202 7344 -441 1089 216 45 4 chr1 217713484 217713753 -64479911 + L1MC3 LINE L1 7494 7773 -12 239 196 141 0 chr1 217713760 217713852 -64479812 + Charlie5 DNA MER1_type 2387 2491 -121 1553 221 52 3 chr1 217714629 217714977 -64478687 - MLT1A1 LTR MaLR 0 365 1 4567 156 28 44 chr1 217715632 217715941 -64477723 + L1PA15 LINE L1 5056 5369 -796 1838 160 0 0 chr1 217715941 217716223 -64477441 + AluSx SINE Alu 1 282 -30 4567 156 28 44 chr1 217716223 217717041 -64476623 + L1PA15 LINE L1 5369 6165 0 1528 202 52 6 chr1 217717049 217717395 -64476269 + L1MA6 LINE L1 5935 6296 -4 21 0 0 0 chr1 217717454 217717475 -64476189 + AT_rich Low_complexity Low_complexity 1 21 0 35 0 0 0 chr1 217717672 217717707 -64475957 + AT_rich Low_complexity Low_complexity 1 35 0 2476 48 0 0 chr1 217717707 217717996 -64475668 - AluY SINE Alu -22 289 1 2207 229 24 7 chr1 217718148 217718744 -64474920 - L1MC2 LINE L1 -60 7701 6133 471 313 126 14 chr1 217719204 217719562 -64474102 + MER90 LTR ERV1 178 575 0 1007 138 22 28 chr1 217719588 217719769 -64473895 - L1PB2 LINE L1 -2 6149 5970 735 265 110 40 chr1 217720114 217720559 -64473105 + L1ME1 LINE L1 3685 4160 -1986 1059 203 0 40 chr1 217720598 217720820 -64472844 + AluJb SINE Alu 1 213 -99 293 267 33 0 chr1 217720838 217720928 -64472736 + L1ME1 LINE L1 4758 4850 -1296 407 156 33 0 chr1 217720949 217721071 -64472593 + (TA)n Simple_repeat Simple_repeat 1 126 0 526 280 93 20 chr1 217721084 217721480 -64472184 + L1ME1 LINE L1 4876 5300 -846 2519 227 35 0 chr1 217721483 217721998 -64471666 + L1MA5 LINE L1 2 534 -6634 12219 188 31 19 chr1 217722122 217725100 -64468564 + L1MA5 LINE L1 3504 6541 -780 455 0 18 0 chr1 217725100 217725155 -64468509 + (CA)n Simple_repeat Simple_repeat 2 57 0 12219 188 31 19 chr1 217725155 217725944 -64467720 + L1MA5 LINE L1 6541 7319 -2 1930 307 63 5 chr1 217725980 217726746 -64466918 + L1ME1 LINE L1 5301 6110 -56 316 316 115 17 chr1 217727144 217727318 -64466346 + L1MEc LINE L1 799 989 -5407 359 319 79 12 chr1 217727462 217727703 -64465961 + L1M4 LINE L1 3385 3641 -2505 282 219 146 24 chr1 217727753 217727876 -64465788 + L1ME3A LINE L1 6033 6170 0 22 35 0 0 chr1 217728058 217728087 -64465577 + AT_rich Low_complexity Low_complexity 1 29 0 1683 173 51 6 chr1 217729689 217730002 -64463662 + MER7A DNA MER2_type 2 326 -20 25 65 0 0 chr1 217730434 217730480 -64463184 + AT_rich Low_complexity Low_complexity 1 46 0 288 231 0 0 chr1 217731254 217731306 -64462358 + MLT2E LTR ERVL 6 57 -571 21 89 0 0 chr1 217731363 217731419 -64462245 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr1 217731541 217731561 -64462103 + (TAGA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr1 217732509 217732538 -64461126 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr1 217732828 217732872 -64460792 + AT_rich Low_complexity Low_complexity 1 44 0 346 374 12 18 chr1 217734320 217734486 -64459178 - MLT1J LTR MaLR -226 285 121 29 0 0 0 chr1 217734824 217734853 -64458811 + AT_rich Low_complexity Low_complexity 1 29 0 321 26 0 0 chr1 217736148 217736186 -64457478 + (TG)n Simple_repeat Simple_repeat 1 38 0 555 243 118 0 chr1 217736251 217736395 -64457269 + MER3 DNA MER1_type 47 207 -2 216 182 0 0 chr1 217736767 217736811 -64456853 + (TA)n Simple_repeat Simple_repeat 2 45 0 834 259 83 29 chr1 217739405 217739718 -64453946 - L1ME3A LINE L1 -34 6136 5807 23 0 0 0 chr1 217739750 217739773 -64453891 + AT_rich Low_complexity Low_complexity 1 23 0 261 163 0 0 chr1 217740009 217740058 -64453606 + CT-rich Low_complexity Low_complexity 3 51 0 1006 261 40 55 chr1 217740417 217740815 -64452849 - LTR52 LTR ERVL -21 400 9 1993 96 0 68 chr1 217741322 217741646 -64452018 - AluY SINE Alu -7 304 3 734 195 6 26 chr1 217741980 217742313 -64451351 + CT-rich Low_complexity Low_complexity 1 326 0 1947 109 0 24 chr1 217742414 217742707 -64450957 - AluSg SINE Alu -24 286 1 781 329 107 29 chr1 217743984 217744273 -64449391 - L1ME3 LINE L1 -215 5930 5665 2185 113 0 0 chr1 217744273 217744566 -64449098 - AluSc SINE Alu -14 295 3 781 329 107 29 chr1 217744566 217745594 -64448070 - L1ME3 LINE L1 -480 5665 4514 342 255 20 13 chr1 217746204 217746353 -64447311 + (TA)n Simple_repeat Simple_repeat 1 150 0 276 136 34 0 chr1 217746465 217746553 -64447111 + (TA)n Simple_repeat Simple_repeat 1 91 0 549 306 68 47 chr1 217746723 217746979 -64446685 - L1ME3 LINE L1 -4922 1197 927 363 44 0 0 chr1 217746979 217747024 -64446640 + (TG)n Simple_repeat Simple_repeat 2 46 0 549 306 68 47 chr1 217747024 217747192 -64446472 - L1ME3 LINE L1 -5192 927 764 180 355 0 13 chr1 217747544 217747620 -64446044 - L2 LINE L2 -4 3309 3235 1205 158 14 47 chr1 217747659 217747938 -64445726 + L1MA9 LINE L1 6033 6302 -10 1754 232 57 21 chr1 217750073 217750547 -64443117 - MLT1D LTR MaLR 0 505 15 28 0 0 0 chr1 217750790 217750818 -64442846 + AT_rich Low_complexity Low_complexity 1 28 0 264 340 10 10 chr1 217750822 217750925 -64442739 - L2 LINE L2 -298 2974 2872 379 211 68 74 chr1 217750928 217751118 -64442546 - MER53 DNA DNA 0 189 1 393 346 37 37 chr1 217751176 217751419 -64442245 - L2 LINE L2 -494 2820 2578 25 0 0 0 chr1 217751922 217751947 -64441717 + AT_rich Low_complexity Low_complexity 1 25 0 39 22 0 0 chr1 217752477 217752523 -64441141 + AT_rich Low_complexity Low_complexity 1 46 0 1671 180 3 25 chr1 217752685 217753001 -64440663 + AluJo SINE Alu 4 312 0 28 48 0 0 chr1 217753419 217753461 -64440203 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 217753651 217753676 -64439988 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr1 217753829 217753860 -64439804 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr1 217753898 217753930 -64439734 + AT_rich Low_complexity Low_complexity 1 32 0 241 178 192 14 chr1 217754326 217754399 -64439265 - MIR SINE MIR -73 189 104 2039 162 12 3 chr1 217756214 217756548 -64437116 - MER1B DNA MER1_type -2 337 1 340 68 0 17 chr1 217756988 217757047 -64436617 + L1MA3 LINE L1 6248 6305 0 25 31 0 0 chr1 217757052 217757084 -64436580 + AT_rich Low_complexity Low_complexity 1 32 0 288 303 22 0 chr1 217757825 217757914 -64435750 - MLT1I LTR MaLR -211 198 108 1786 251 99 62 chr1 217757921 217758018 -64435646 + L1MCa LINE L1 5 97 -5948 2521 47 0 0 chr1 217758018 217758317 -64435347 - AluY SINE Alu -12 299 1 1786 251 99 62 chr1 217758317 217759119 -64434545 + L1MCa LINE L1 97 913 -5132 288 206 39 15 chr1 217761272 217761480 -64432184 + (TA)n Simple_repeat Simple_repeat 1 213 0 402 139 14 14 chr1 217761551 217761623 -64432041 - L1MC/D LINE L1 -723 5610 5539 1209 216 33 0 chr1 217761623 217761864 -64431800 - L1MC/D LINE L1 -696 5648 5400 249 226 39 10 chr1 217761975 217762077 -64431587 + (TATAA)n Simple_repeat Simple_repeat 2 106 0 270 306 221 25 chr1 217762159 217762358 -64431306 - L2 LINE L2 -729 2585 2348 1986 137 7 3 chr1 217762364 217762671 -64430993 + AluSx SINE Alu 1 308 -4 269 308 145 36 chr1 217763144 217763420 -64430244 - L2 LINE L2 -598 2716 2411 1379 229 68 45 chr1 217763684 217764144 -64429520 + MLT2B1 LTR ERVL 1 462 -2 668 150 6 29 chr1 217765068 217765241 -64428423 + CT-rich Low_complexity Low_complexity 1 169 0 276 100 0 0 chr1 217765265 217765305 -64428359 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 226 306 45 45 chr1 217766678 217766812 -64426852 + MLT1K LTR MaLR 394 527 -61 2546 43 0 0 chr1 217767107 217767406 -64426258 + AluY SINE Alu 1 299 -12 28 0 0 0 chr1 217768191 217768219 -64425445 + AT_rich Low_complexity Low_complexity 1 28 0 2067 102 3 0 chr1 217768422 217768735 -64424929 - AluSx SINE Alu 0 314 1 475 274 33 82 chr1 217768758 217769028 -64424636 - MER110 LTR ERV1 -64 427 171 535 266 18 35 chr1 217769207 217769376 -64424288 - MIR SINE MIR -23 239 74 226 191 21 0 chr1 217769702 217769749 -64423915 + (TA)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr1 217770336 217770361 -64423303 + AT_rich Low_complexity Low_complexity 1 25 0 187 338 26 0 chr1 217771307 217771384 -64422280 - L2 LINE L2 -908 2406 2328 34 89 0 0 chr1 217772034 217772124 -64421540 + AT_rich Low_complexity Low_complexity 1 90 0 206 62 31 0 chr1 217773258 217773290 -64420374 + (TTA)n Simple_repeat Simple_repeat 1 33 0 299 335 50 53 chr1 217774040 217774416 -64419248 + MER110-int LTR ERV1 2609 2983 -1664 708 296 89 24 chr1 217776232 217776614 -64417050 + MER92A LTR ERV1 4 410 -2 629 313 61 61 chr1 217776616 217776961 -64416703 - MER45R DNA AcHobo -1013 568 224 940 249 0 10 chr1 217777034 217777235 -64416429 - MER45R DNA AcHobo -1381 200 2 285 321 97 25 chr1 217777718 217777955 -64415709 + MLT1I LTR MaLR 107 360 -49 1656 171 0 17 chr1 217778684 217778982 -64414682 + AluJo SINE Alu 1 293 -19 22 35 0 0 chr1 217779231 217779260 -64414404 + AT_rich Low_complexity Low_complexity 1 29 0 8369 118 25 14 chr1 217779285 217780548 -64413116 - HSMAR1 DNA Mariner 0 1287 10 257 311 174 19 chr1 217780913 217781074 -64412590 - MIR SINE MIR -4 258 73 28 0 0 0 chr1 217782484 217782512 -64411152 + AT_rich Low_complexity Low_complexity 1 28 0 1131 249 50 0 chr1 217782518 217782799 -64410865 - AluJo SINE Alu -6 296 2 474 231 70 0 chr1 217783220 217783363 -64410301 + MER103 DNA DNA 12 164 -2 5991 167 63 9 chr1 217785651 217786806 -64406858 - Tigger3b DNA MER2_type 0 1231 14 22 88 0 0 chr1 217787313 217787370 -64406294 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr1 217787660 217787681 -64405983 + AT_rich Low_complexity Low_complexity 1 21 0 1845 193 19 16 chr1 217788099 217788462 -64405202 + MLT1A1 LTR MaLR 1 364 -1 1029 108 0 0 chr1 217788825 217788973 -64404691 + AluSp/q SINE Alu 163 310 -3 425 299 57 37 chr1 217789151 217789737 -64403927 + L1ME LINE L1 4901 5500 -670 4166 250 27 50 chr1 217789920 217791082 -64402582 - L1M2 LINE L1 -4873 1976 842 1733 151 3 35 chr1 217791182 217791493 -64402171 - AluSq SINE Alu -12 301 1 234 294 6 12 chr1 217791611 217791774 -64401890 + (TA)n Simple_repeat Simple_repeat 1 162 0 375 280 10 0 chr1 217791778 217791878 -64401786 - MLT1A1 LTR MaLR -20 345 245 435 290 62 18 chr1 217791923 217792199 -64401465 - L1M4 LINE L1 -953 5895 5608 267 245 122 10 chr1 217792330 217792428 -64401236 - MER51D LTR ERV1 -86 571 463 2448 32 0 0 chr1 217793094 217793435 -64400229 - AluY SINE Alu 0 341 1 414 229 9 5 chr1 217794295 217794408 -64399256 - L1MA4A LINE L1 -1 6278 6041 241 180 20 0 chr1 217794397 217794447 -64399217 - L1MA4A LINE L1 -179 6124 6074 * 3403 245 73 7 chr1 217794914 217796748 -64396916 - L1M4 LINE L1 -2826 4022 2067 22 94 0 0 chr1 217796858 217796922 -64396742 + AT_rich Low_complexity Low_complexity 1 64 0 24 85 0 0 chr1 217797104 217797163 -64396501 + AT_rich Low_complexity Low_complexity 1 59 0 3342 100 4 10 chr1 217797698 217798196 -64395468 - L1PA13 LINE L1 -1 6162 5668 41 0 0 0 chr1 217798509 217798550 -64395114 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr1 217798885 217798907 -64394757 + AT_rich Low_complexity Low_complexity 1 22 0 455 208 38 0 chr1 217799773 217799879 -64393785 + L1M4 LINE L1 5167 5276 -870 * 3397 178 35 30 chr1 217799864 217800863 -64392801 + L1MA8 LINE L1 4991 5990 -301 3687 228 72 54 chr1 217800987 217802943 -64390721 - L1MA9 LINE L1 0 6312 4318 1089 150 116 24 chr1 217802952 217803159 -64390505 + AluSx SINE Alu 11 236 -76 401 101 43 29 chr1 217803182 217803251 -64390413 + polypurine Low_complexity Low_complexity 4 73 0 851 96 34 28 chr1 217803252 217803429 -64390235 + GA-rich Low_complexity Low_complexity 1 178 0 3404 186 17 27 chr1 217803429 217803608 -64390056 - L1MA9 LINE L1 -1814 4332 4153 2314 103 0 0 chr1 217803608 217803909 -64389755 - AluSx SINE Alu -11 301 1 3404 186 17 27 chr1 217803909 217804476 -64389188 - L1MA9 LINE L1 -1993 4153 3593 216 0 0 0 chr1 217804484 217804508 -64389156 + (T)n Simple_repeat Simple_repeat 1 24 0 279 205 320 0 chr1 217804530 217804652 -64389012 - L1MA9 LINE L1 -2555 3591 3431 686 104 17 9 chr1 217804798 217804913 -64388751 - MLT2B3 LTR ERVL -436 118 3 1561 161 77 3 chr1 217804985 217805270 -64388394 - AluJo SINE Alu -1 311 6 2456 53 0 3 chr1 217806140 217806442 -64387222 - AluY SINE Alu -10 301 1 576 316 87 81 chr1 217806817 217808146 -64385518 - HERV17 LTR ERV1 -2325 4766 3431 921 246 37 79 chr1 217809974 217810352 -64383312 + MLT1A1 LTR MaLR 1 362 -3 1210 264 33 28 chr1 217812332 217812695 -64380969 + MLT1A1 LTR MaLR 1 365 0 261 57 0 0 chr1 217813530 217813565 -64380099 + (TG)n Simple_repeat Simple_repeat 2 36 0 217 113 38 38 chr1 217814225 217814305 -64379359 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1319 135 5 0 chr1 217814338 217814553 -64379111 - L1MA3 LINE L1 0 6305 6090 4038 177 27 29 chr1 217815205 217816396 -64377268 + L1MA4A LINE L1 4881 6073 -230 2212 307 33 33 chr1 217817053 217817913 -64375751 - MST-int LTR MaLR -189 1462 603 540 236 23 65 chr1 217817909 217818125 -64375539 - L1PB3 LINE L1 0 6154 5950 * 2189 262 21 18 chr1 217818127 217818779 -64374885 - MSTC-int LTR MaLR -1080 655 2 1061 216 0 5 chr1 217818781 217818980 -64374684 - MSTC LTR MaLR 0 428 231 315 145 53 13 chr1 217819094 217819170 -64374494 + MLT-int LTR MaLR 33 111 -1624 1030 211 66 12 chr1 217819201 217819503 -64374161 - LTR27 LTR ERV1 -8 493 195 1311 276 23 0 chr1 217819503 217819851 -64373813 - L1M4 LINE L1 -2024 4122 3767 222 37 0 0 chr1 217820204 217820231 -64373433 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 24 0 0 0 chr1 217820665 217820689 -64372975 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr1 217820987 217821014 -64372650 + AT_rich Low_complexity Low_complexity 1 27 0 395 359 46 15 chr1 217821101 217821296 -64372368 - LTR16A LTR ERVL -3 447 247 484 375 25 20 chr1 217821698 217822053 -64371611 - LTR16C LTR ERVL -2 489 133 336 104 0 0 chr1 217823159 217823207 -64370457 + AluSp/q SINE Alu 243 290 -13 1492 62 0 0 chr1 217823565 217823758 -64369906 + L1PA6 LINE L1 5734 5926 -228 23 54 0 0 chr1 217823876 217823913 -64369751 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr1 217824180 217824203 -64369461 + AT_rich Low_complexity Low_complexity 1 23 0 209 317 122 8 chr1 217824969 217825092 -64368572 + MIR SINE MIR 78 214 -48 946 123 78 6 chr1 217825181 217825360 -64368304 - L1MA1 LINE L1 0 6302 6111 289 222 11 11 chr1 217825547 217825637 -64368027 + (TA)n Simple_repeat Simple_repeat 1 90 0 24 0 0 0 chr1 217826286 217826310 -64367354 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr1 217828174 217828205 -64365459 + (TA)n Simple_repeat Simple_repeat 2 32 0 209 369 150 13 chr1 217828488 217828721 -64364943 - L2 LINE L2 -386 2928 2664 190 214 71 0 chr1 217828934 217828976 -64364688 - L2 LINE L2 0 3313 3269 330 200 15 0 chr1 217829284 217829349 -64364315 - MLT2A2 LTR ERVL -233 220 155 7183 43 1 0 chr1 217829397 217830742 -64362922 + L1PA4 LINE L1 4506 5852 -303 22 35 0 0 chr1 217831769 217831798 -64361866 + AT_rich Low_complexity Low_complexity 1 29 0 301 98 0 0 chr1 217832144 217832195 -64361469 - L1MA3 LINE L1 0 6305 6255 209 167 19 19 chr1 217832565 217832619 -64361045 + (TTTAA)n Simple_repeat Simple_repeat 3 56 0 1183 201 55 60 chr1 217834527 217834911 -64358753 + MLT1C LTR MaLR 74 455 -12 284 286 169 32 chr1 217834993 217835182 -64358482 - MLT1H1 LTR MaLR -281 274 60 2043 75 0 27 chr1 217835432 217835745 -64357919 + AluY SINE Alu 4 311 0 1044 136 0 17 chr1 217835748 217835924 -64357740 + AluSg/x SINE Alu 125 297 -12 1133 242 67 96 chr1 217835931 217836836 -64356828 + L1MCa LINE L1 1039 1917 -4509 207 0 0 0 chr1 217836936 217836959 -64356705 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr1 217837209 217837229 -64356435 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 24 77 0 0 chr1 217837565 217837617 -64356047 + AT_rich Low_complexity Low_complexity 1 52 0 1016 38 15 0 chr1 217838938 217839070 -64354594 + L1PA4 LINE L1 6022 6155 0 2125 255 65 17 chr1 217839070 217840269 -64353395 - L1MDb LINE L1 -4431 1975 715 1323 287 57 22 chr1 217840449 217840905 -64352759 - L1MDb LINE L1 -5929 480 9 190 339 147 46 chr1 217841360 217841687 -64351977 + L2 LINE L2 2949 3308 -5 316 341 85 6 chr1 217842005 217842181 -64351483 - MLT1J LTR MaLR -51 460 271 228 149 54 81 chr1 217843659 217843733 -64349931 - L1MC4 LINE L1 -1325 6717 6646 367 239 115 9 chr1 217843745 217843858 -64349806 + MER50 LTR ERV1 1 125 -609 1045 274 99 21 chr1 217843869 217844292 -64349372 + MER50 LTR ERV1 61 516 -218 180 0 0 0 chr1 217844893 217844913 -64348751 + (CA)n Simple_repeat Simple_repeat 2 21 0 200 296 32 80 chr1 217845226 217845351 -64348313 + MIR SINE MIR 74 192 -70 23 33 0 0 chr1 217846107 217846137 -64347527 + AT_rich Low_complexity Low_complexity 1 30 0 231 218 0 0 chr1 217846217 217846272 -64347392 + L1MC4 LINE L1 6649 6703 -1339 319 280 161 21 chr1 217846443 217846629 -64347035 + LTR16C LTR ERVL 280 491 0 17070 117 32 29 chr1 217847274 217849971 -64343693 + Charlie3 DNA MER1_type 1 2706 -4 22 56 0 0 chr1 217850268 217850304 -64343360 + AT_rich Low_complexity Low_complexity 1 36 0 214 362 120 48 chr1 217850377 217850711 -64342953 + L2 LINE L2 2394 2751 -563 394 329 0 51 chr1 217850755 217850892 -64342772 + MER5A DNA MER1_type 60 189 0 1225 165 0 45 chr1 217851808 217852183 -64341481 - L1MA7 LINE L1 -11 6280 5817 279 105 0 0 chr1 217852159 217852197 -64341467 - L1MA7 LINE L1 -775 5537 5500 * 2228 212 30 37 chr1 217852196 217852791 -64340873 + L1M2 LINE L1 4787 5377 -769 452 91 0 0 chr1 217852793 217852859 -64340805 + MER41A LTR ERV1 401 466 -88 721 181 0 41 chr1 217852863 217853034 -64340630 + L1M2 LINE L1 5366 5529 -762 357 62 0 0 chr1 217853226 217853274 -64340390 + (TG)n Simple_repeat Simple_repeat 1 48 0 24 0 0 0 chr1 217854853 217854877 -64338787 + AT_rich Low_complexity Low_complexity 1 24 0 217 346 25 0 chr1 217855346 217855427 -64338237 + L2 LINE L2 3186 3268 -4 397 371 97 22 chr1 217856130 217856718 -64336946 - L2 LINE L2 -952 2362 1731 198 0 0 0 chr1 217856949 217856971 -64336693 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 34039 99 9 1 chr1 217857683 217861659 -64332005 - HERVL-A2 LTR ERVL -985 4669 649 194 0 39 0 chr1 217861659 217861685 -64331979 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 34039 99 9 1 chr1 217861685 217862340 -64331324 - HERVL-A2 LTR ERVL -5005 649 1 345 98 0 0 chr1 217862340 217862391 -64331273 - MLT2A2 LTR ERVL 0 453 403 334 232 98 0 chr1 217862415 217862497 -64331167 + L1MC4 LINE L1 6614 6703 -1339 224 273 0 0 chr1 217862497 217862541 -64331123 + (TG)n Simple_repeat Simple_repeat 2 45 0 3026 86 0 10 chr1 217862541 217862949 -64330715 - MLT2A1 LTR ERVL -40 404 1 35 83 0 0 chr1 217864641 217864725 -64328939 + AT_rich Low_complexity Low_complexity 1 84 0 1210 264 33 28 chr1 217866213 217866576 -64327088 + MLT1A1 LTR MaLR 1 365 0 413 336 110 23 chr1 217867606 217867960 -64325704 + HAL1 LINE L1 22 406 -2101 250 132 38 0 chr1 217868141 217868194 -64325470 + (TA)n Simple_repeat Simple_repeat 1 55 0 229 299 0 0 chr1 217868194 217868261 -64325403 + L1MD3 LINE L1 6612 6678 -1317 447 252 23 53 chr1 217868627 217868758 -64324906 + MER63A DNA MER1_type 58 184 -26 21 57 0 0 chr1 217869591 217869626 -64324038 + AT_rich Low_complexity Low_complexity 1 35 0 240 314 20 0 chr1 217870211 217870313 -64323351 + CT-rich Low_complexity Low_complexity 1 104 0 183 42 0 0 chr1 217870513 217870537 -64323127 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 202 297 148 31 chr1 217870895 217871023 -64322641 + L3 LINE CR1 1278 1420 -157 736 282 58 4 chr1 217871803 217872044 -64321620 - MIR SINE MIR 0 262 9 21 89 0 0 chr1 217872861 217872917 -64320747 + AT_rich Low_complexity Low_complexity 1 56 0 30 27 0 0 chr1 217872959 217872996 -64320668 + AT_rich Low_complexity Low_complexity 1 37 0 207 213 0 21 chr1 217874369 217874416 -64319248 + CT-rich Low_complexity Low_complexity 2 47 0 267 31 0 0 chr1 217874520 217874552 -64319112 + (A)n Simple_repeat Simple_repeat 1 32 0 2077 169 16 8 chr1 217874556 217874928 -64318736 - THE1C LTR MaLR 0 375 1 718 127 0 0 chr1 217875032 217875142 -64318522 + AluSg/x SINE Alu 196 305 -5 357 273 16 23 chr1 217875336 217875464 -64318200 - L1ME LINE L1 -358 5812 5686 269 204 71 53 chr1 217876024 217876137 -64317527 - L1ME LINE L1 -735 5431 5317 588 61 31 0 chr1 217876208 217876306 -64317358 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 28 48 0 0 chr1 217876395 217876437 -64317227 + AT_rich Low_complexity Low_complexity 1 42 0 206 230 27 14 chr1 217876471 217876545 -64317119 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 448 206 24 63 chr1 217876814 217876940 -64316724 + MER20 DNA MER1_type 96 216 -3 858 152 30 86 chr1 217877845 217878043 -64315621 + MER20 DNA MER1_type 24 210 -9 24 0 0 0 chr1 217878726 217878750 -64314914 + AT_rich Low_complexity Low_complexity 1 24 0 5243 116 14 36 chr1 217878797 217879677 -64313987 + L1PB2 LINE L1 5292 6151 0 994 184 325 49 chr1 217879948 217880339 -64313325 + L1MC3 LINE L1 7259 7757 -28 1631 181 50 3 chr1 217880371 217880653 -64313011 + AluJb SINE Alu 1 295 -17 28 29 0 0 chr1 217882482 217882517 -64311147 + AT_rich Low_complexity Low_complexity 1 35 0 233 190 0 17 chr1 217882521 217882579 -64311085 + MLT1J2 LTR MaLR 357 413 -37 21 36 0 0 chr1 217882738 217882766 -64310898 + AT_rich Low_complexity Low_complexity 1 28 0 702 147 0 0 chr1 217883007 217883109 -64310555 + FLAM_C SINE Alu 17 118 -25 360 0 0 0 chr1 217883113 217883153 -64310511 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 252 0 0 0 chr1 217883555 217883583 -64310081 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 29 0 0 0 chr1 217883703 217883732 -64309932 + AT_rich Low_complexity Low_complexity 1 29 0 1661 169 25 0 chr1 217884048 217884364 -64309300 + AluSx SINE Alu 1 323 0 21 82 0 0 chr1 217884603 217884652 -64309012 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr1 217884833 217884868 -64308796 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr1 217886039 217886076 -64307588 + AT_rich Low_complexity Low_complexity 1 37 0 654 235 16 33 chr1 217886229 217886412 -64307252 + MER3 DNA MER1_type 1 180 -29 25 65 0 0 chr1 217886517 217886563 -64307101 + AT_rich Low_complexity Low_complexity 1 46 0 336 330 101 9 chr1 217889487 217889705 -64303959 - L1ME LINE L1 -538 5626 5386 1371 207 113 67 chr1 217890417 217890604 -64303060 + LTR36 LTR ERV1 1 178 -433 2156 136 0 0 chr1 217890604 217890914 -64302750 + AluSx SINE Alu 1 310 -2 1371 207 113 67 chr1 217890914 217891098 -64302566 + LTR36 LTR ERV1 178 389 -222 339 172 47 0 chr1 217891292 217891356 -64302308 - MER49 LTR ERV1 -171 752 686 695 179 83 6 chr1 217891356 217891512 -64302152 - LTR36-int LTR ERV1 -168 6163 5996 4208 187 48 15 chr1 217891627 217892552 -64301112 - LTR36-int LTR ERV1 -578 5753 4799 4534 159 16 7 chr1 217892665 217893504 -64300160 - LTR36-int LTR ERV1 -1788 3968 2302 938 174 87 15 chr1 217893550 217893746 -64299918 - LTR36-int LTR ERV1 -2602 2278 2069 * 1974 201 66 73 chr1 217893737 217893981 -64299683 - LTR36-int LTR ERV1 -2951 3725 3481 1821 135 0 21 chr1 217893981 217894263 -64299401 + AluJb SINE Alu 12 287 -25 1974 201 66 73 chr1 217894263 217895023 -64298641 - LTR36-int LTR ERV1 -3195 3481 786 799 284 28 14 chr1 217895069 217895287 -64298377 - LTR36-int LTR ERV1 -2716 1569 1349 563 357 44 16 chr1 217895620 217895869 -64297795 - LTR36-int LTR ERV1 -1418 368 113 2512 158 119 47 chr1 217895936 217896506 -64297158 - LTR36 LTR ERV1 0 611 1 4765 114 51 0 chr1 217896688 217897396 -64296268 + HSMAR1 DNA Mariner 1 744 -543 1669 235 50 29 chr1 217897401 217897945 -64295719 - L1MB7 LINE L1 -54 6628 6074 * 1792 220 57 136 chr1 217897933 217899076 -64294588 - L1MCa LINE L1 -5011 1034 37 2051 243 28 45 chr1 217899076 217900196 -64293468 - L1MB7 LINE L1 -570 6106 5002 1341 241 85 40 chr1 217900196 217900643 -64293021 - L1MB7 LINE L1 -4882 1660 1186 2118 105 3 29 chr1 217900643 217900957 -64292707 + AluY SINE Alu 1 306 -5 1341 241 85 40 chr1 217900957 217901015 -64292649 - L1MB7 LINE L1 -5356 1186 1132 243 0 0 0 chr1 217901031 217901058 -64292606 + (TG)n Simple_repeat Simple_repeat 2 28 0 303 210 49 25 chr1 217901085 217901247 -64292417 + (TATAA)n Simple_repeat Simple_repeat 3 168 0 2942 266 44 59 chr1 217901263 217901809 -64291855 - L1MB7 LINE L1 -5431 1111 589 976 205 82 88 chr1 217901809 217902262 -64291402 - LTR7 LTR ERV1 0 450 1 2942 266 44 59 chr1 217902262 217902836 -64290828 - L1MB7 LINE L1 -5953 589 8 280 278 0 33 chr1 217903245 217903335 -64290329 - LTR67 LTR ERVL -40 517 431 231 219 0 49 chr1 217903708 217903790 -64289874 - L1MC4 LINE L1 -1351 6691 6614 4089 91 68 2 chr1 217905458 217906062 -64287602 - LTR9B LTR ERV1 0 644 1 31 26 0 0 chr1 217906148 217906186 -64287478 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr1 217906602 217906622 -64287042 + (TTG)n Simple_repeat Simple_repeat 2 21 0 315 238 60 0 chr1 217906907 217906991 -64286673 - L1MC4 LINE L1 -1337 6705 6617 518 299 60 67 chr1 217907170 217907468 -64286196 - L2 LINE L2 -2 3311 3016 1053 197 91 42 chr1 217908407 217908737 -64284927 + L1MA7 LINE L1 5946 6291 0 6766 32 2 0 chr1 217909276 217910092 -64283572 - L1PA3 LINE L1 -1748 4398 3581 8369 29 0 6 chr1 217910092 217911866 -64281798 + L1PA3 LINE L1 4383 6151 -4 215 233 0 0 chr1 217912628 217912671 -64280993 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 1909 158 7 0 chr1 217912845 217913149 -64280515 - AluJb SINE Alu -6 306 1 1723 190 60 7 chr1 217913208 217913623 -64280041 + Tigger2 DNA MER2_type 4 440 -2278 30 0 0 0 chr1 217913673 217913703 -64279961 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr1 217913733 217913782 -64279882 + AT_rich Low_complexity Low_complexity 1 49 0 2037 132 0 7 chr1 217915111 217915415 -64278249 + AluSg SINE Alu 1 302 -8 197 122 61 0 chr1 217916061 217916110 -64277554 + T-rich Low_complexity Low_complexity 4 55 0 2014 126 7 0 chr1 217916120 217916406 -64277258 - AluSx SINE Alu -24 288 1 295 192 0 0 chr1 217917669 217917721 -64275943 + L1M1 LINE L1 766 817 -6748 21 0 0 0 chr1 217919177 217919198 -64274466 + AT_rich Low_complexity Low_complexity 1 21 0 2127 120 3 0 chr1 217919455 217919756 -64273908 + AluSq SINE Alu 1 302 -11 225 191 0 0 chr1 217920105 217920152 -64273512 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1277 174 25 25 chr1 217920234 217920476 -64273188 + L1MA3 LINE L1 9 250 -7315 326 49 0 0 chr1 217920502 217920543 -64273121 + MLT2A1 LTR ERVL 404 444 0 2747 147 60 40 chr1 217920543 217921163 -64272501 + L1MA3 LINE L1 2876 3507 -4058 * 6301 158 16 10 chr1 217921153 217922514 -64271150 + L1MA3 LINE L1 6364 7723 -1 235 250 0 0 chr1 217923089 217923145 -64270519 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 2590 192 34 35 chr1 217923280 217923480 -64270184 - MER6A DNA MER2_type -299 566 367 2142 61 54 14 chr1 217923480 217923774 -64269890 + AluY SINE Alu 1 306 -5 2590 192 34 35 chr1 217923774 217924140 -64269524 - MER6A DNA MER2_type -498 367 1 1567 183 39 56 chr1 217924381 217924791 -64268873 + MLT1C LTR MaLR 53 455 -12 284 286 169 32 chr1 217924873 217925062 -64268602 - MLT1H1 LTR MaLR -281 274 60 2658 29 0 3 chr1 217925309 217925618 -64268046 + AluY SINE Alu 1 308 -3 354 353 156 10 chr1 217925868 217926157 -64267507 - L2 LINE L2 -62 3251 2921 1511 267 102 26 chr1 217927133 217927806 -64265858 - L1MEc LINE L1 -4090 2306 1686 305 24 24 0 chr1 217927806 217927848 -64265816 + (TG)n Simple_repeat Simple_repeat 2 44 0 1511 267 102 26 chr1 217927848 217928404 -64265260 - L1MEc LINE L1 -4710 1686 907 454 273 77 32 chr1 217928827 217929047 -64264617 + L1M4 LINE L1 3745 3974 -2172 26 0 0 0 chr1 217929051 217929077 -64264587 + AT_rich Low_complexity Low_complexity 1 26 0 327 49 0 0 chr1 217930076 217930117 -64263547 + (CA)n Simple_repeat Simple_repeat 2 42 0 3492 154 40 0 chr1 217930669 217931318 -64262346 + L1MA4 LINE L1 5620 6294 -6 21 57 0 0 chr1 217931597 217931632 -64262032 + AT_rich Low_complexity Low_complexity 1 35 0 2000 159 0 0 chr1 217932770 217933079 -64260585 - AluSx SINE Alu -2 310 2 287 333 92 56 chr1 217933673 217934030 -64259634 - L2 LINE L2 -8 3305 2936 1923 312 198 32 chr1 217934037 217935387 -64258277 - L2 LINE L2 -522 2792 1219 251 226 0 118 chr1 217935768 217935861 -64257803 - MLT1J2 LTR MaLR -319 131 50 46 0 0 0 chr1 217935915 217935961 -64257703 + AT_rich Low_complexity Low_complexity 1 46 0 346 181 181 0 chr1 217936077 217936149 -64257515 + MER67C LTR ERV1 1 85 -429 986 250 134 35 chr1 217936176 217936626 -64257038 + MER67C LTR ERV1 57 511 -3 2001 143 0 13 chr1 217938076 217938390 -64255274 - AluSx SINE Alu -2 310 1 323 268 19 13 chr1 217939256 217939413 -64254251 + (TA)n Simple_repeat Simple_repeat 1 158 0 369 315 139 16 chr1 217939424 217939675 -64253989 + L1MEc LINE L1 1536 1817 -4579 940 290 47 31 chr1 217939748 217940203 -64253461 - L1MEc LINE L1 -4917 940 525 774 232 32 27 chr1 217940250 217940435 -64253229 - MER20 DNA MER1_type -5 214 29 609 329 64 40 chr1 217940499 217940903 -64252761 - L1MEc LINE L1 -5926 470 57 1115 270 119 35 chr1 217941048 217941511 -64252153 + MLT1D LTR MaLR 2 503 -2 204 254 0 56 chr1 217941823 217941894 -64251770 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 24 53 0 0 chr1 217941930 217941968 -64251696 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr1 217943152 217943192 -64250472 + AT_rich Low_complexity Low_complexity 1 40 0 21 89 0 0 chr1 217943457 217943513 -64250151 + AT_rich Low_complexity Low_complexity 1 56 0 191 233 50 117 chr1 217944884 217945004 -64248660 - MIR SINE MIR -72 190 79 350 132 0 0 chr1 217945014 217945067 -64248597 - MLT2A1 LTR ERVL -1 452 400 210 143 0 0 chr1 217945098 217945133 -64248531 + (TG)n Simple_repeat Simple_repeat 1 35 0 2469 118 26 18 chr1 217945133 217945523 -64248141 - MLT2A1 LTR ERVL -45 399 7 410 140 54 0 chr1 217945530 217945623 -64248041 - HERVL-A1 LTR ERVL 0 5654 5557 3354 74 2 14 chr1 217945723 217946167 -64247497 - HERVL-A1 LTR ERVL -714 4940 4502 2178 196 23 33 chr1 217946173 217946693 -64246971 - L1 LINE L1 -938 5208 4694 1650 216 96 17 chr1 217946704 217946903 -64246761 + L1 LINE L1 4197 4379 -1767 402 21 0 0 chr1 217946903 217946950 -64246714 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1650 216 96 17 chr1 217946950 217947227 -64246437 + L1 LINE L1 4379 4711 -1435 453 116 0 0 chr1 217948077 217948146 -64245518 + (GAAA)n Simple_repeat Simple_repeat 2 70 0 554 374 35 0 chr1 217948156 217948383 -64245281 + L2 LINE L2 2827 3061 -252 190 0 67 0 chr1 217948526 217948556 -64245108 + (TTA)n Simple_repeat Simple_repeat 3 34 0 564 0 15 0 chr1 217948556 217948622 -64245042 - L1PA3 LINE L1 -18 6137 6071 8933 29 0 0 chr1 217948622 217949706 -64243958 + L1P LINE L1 2139 3222 -2924 308 302 35 0 chr1 217949758 217949844 -64243820 + L2 LINE L2 3225 3313 0 22 35 0 0 chr1 217950121 217950150 -64243514 + AT_rich Low_complexity Low_complexity 1 29 0 3298 16 3 0 chr1 217950875 217951256 -64242408 + L1HS LINE L1 5774 6155 0 375 323 74 11 chr1 217951256 217951445 -64242219 - MER5C DNA MER1_type -122 202 2 687 324 84 45 chr1 217951587 217952074 -64241590 - L2 LINE L2 -2755 559 54 266 273 58 4 chr1 217953400 217953569 -64240095 - MIR SINE MIR -2 260 15 242 95 24 0 chr1 217954595 217954637 -64239027 + (TC)n Simple_repeat Simple_repeat 2 44 0 25 0 0 0 chr1 217954659 217954684 -64238980 + AT_rich Low_complexity Low_complexity 1 25 0 313 238 40 50 chr1 217955081 217955182 -64238482 - L2 LINE L2 -1 3312 3213 1914 259 58 60 chr1 217955637 217956084 -64237580 + L1ME1 LINE L1 5354 5778 -388 2032 128 0 3 chr1 217956084 217956372 -64237292 - AluSq SINE Alu -26 287 1 1914 259 58 60 chr1 217956372 217956759 -64236905 + L1ME1 LINE L1 5778 6164 -2 231 250 0 0 chr1 217956906 217956950 -64236714 + MIR SINE MIR 104 147 -115 301 243 42 83 chr1 217956957 217957101 -64236563 - L2 LINE L2 -1 3312 3175 21 0 0 0 chr1 217957150 217957171 -64236493 + AT_rich Low_complexity Low_complexity 1 21 0 209 250 10 29 chr1 217957181 217957285 -64236379 + (TA)n Simple_repeat Simple_repeat 2 103 0 2276 159 82 55 chr1 217957494 217957666 -64235998 - MER4E LTR ERV1 0 779 613 2085 112 3 26 chr1 217957666 217957969 -64235695 + AluSq SINE Alu 1 296 -17 2276 159 82 55 chr1 217957969 217958389 -64235275 - MER4E LTR ERV1 -166 613 1 238 278 178 0 chr1 217958690 217958780 -64234884 - HAL1 LINE L1 -2355 152 47 2021 202 13 11 chr1 217958783 217959165 -64234499 - MLT1B LTR MaLR -7 383 1 25 0 0 0 chr1 217959460 217959485 -64234179 + AT_rich Low_complexity Low_complexity 1 25 0 838 243 28 9 chr1 217959873 217960087 -64233577 + MER20 DNA MER1_type 1 218 -1 661 251 127 56 chr1 217960748 217961103 -64232561 + HAL1 LINE L1 933 1312 -1195 304 264 0 0 chr1 217961285 217961376 -64232288 + HAL1 LINE L1 2232 2322 -185 41 36 0 0 chr1 217961723 217961778 -64231886 + AT_rich Low_complexity Low_complexity 1 55 0 4202 220 71 9 chr1 217962743 217964342 -64229322 + L1MC2 LINE L1 4642 6343 -1 5981 165 63 5 chr1 217964489 217965620 -64228044 - Tigger3b DNA MER2_type 0 1231 36 426 214 0 24 chr1 217965609 217965693 -64227971 - MER7A DNA MER2_type -266 80 1 * 413 65 0 16 chr1 217966121 217966183 -64227481 + (TTTTA)n Simple_repeat Simple_repeat 2 62 0 2151 91 0 0 chr1 217966183 217966458 -64227206 - AluSx SINE Alu -32 280 6 21 0 0 0 chr1 217966468 217966489 -64227175 + AT_rich Low_complexity Low_complexity 1 21 0 1582 313 49 51 chr1 217967589 217968429 -64225235 + L1M3d LINE L1 13 850 -5041 463 163 52 9 chr1 217968434 217968561 -64225103 + L1M3d LINE L1 935 1070 -4821 2342 140 51 17 chr1 217968561 217968975 -64224689 - MSTA LTR MaLR 0 428 1 7020 198 80 33 chr1 217968976 217969650 -64224014 - MSTA-int LTR MaLR -1 1650 1009 3126 30 5 0 chr1 217969650 217970021 -64223643 - L1PA5 LINE L1 0 6154 5782 7020 198 80 33 chr1 217970021 217970918 -64222746 - MSTA-int LTR MaLR -642 1009 5 1296 179 9 5 chr1 217970938 217971162 -64222502 - MSTA LTR MaLR -203 225 1 234 250 47 0 chr1 217971163 217971227 -64222437 + L1M3d LINE L1 1068 1134 -4757 340 189 18 36 chr1 217971243 217971354 -64222310 + L1M3d LINE L1 2684 2792 -3178 * 2120 263 28 31 chr1 217971345 217972455 -64221209 + L1M4c LINE L1 2153 3261 -3121 251 28 28 0 chr1 217974704 217974740 -64218924 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2093 103 7 0 chr1 217974742 217975024 -64218640 - AluSg SINE Alu -12 298 15 27 73 0 0 chr1 217975457 217975512 -64218152 + AT_rich Low_complexity Low_complexity 1 55 0 981 245 9 0 chr1 217975520 217975753 -64217911 + MER46A DNA MER2_type 2 236 0 23 33 0 0 chr1 217976006 217976036 -64217628 + AT_rich Low_complexity Low_complexity 1 30 0 2572 127 45 0 chr1 217976422 217976840 -64216824 - L1PA13 LINE L1 -2 6161 5725 1894 234 40 20 chr1 217976965 217977914 -64215750 - Tigger6a DNA MER2_type -85 998 2 31 0 0 0 chr1 217978490 217978521 -64215143 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 217978886 217978907 -64214757 + AT_rich Low_complexity Low_complexity 1 21 0 344 322 113 41 chr1 217979519 217979864 -64213800 - MLT1J2 LTR MaLR -78 372 3 432 55 0 0 chr1 217979957 217980012 -64213652 + (CA)n Simple_repeat Simple_repeat 2 56 0 2622 194 25 6 chr1 217980308 217980829 -64212835 - Tigger2 DNA MER2_type -2 2716 2186 * 2930 147 60 0 chr1 217980821 217981317 -64212347 - Tigger2 DNA MER2_type -1998 720 195 991 210 18 13 chr1 217981479 217981703 -64211961 - Tigger2 DNA MER2_type -2493 225 1 229 274 63 29 chr1 217981703 217981826 -64211838 - MIR SINE MIR -58 204 72 2133 173 7 29 chr1 217982217 217982638 -64211026 + MLT2D LTR ERVL 3 414 0 2212 81 0 0 chr1 217982659 217982956 -64210708 - L1PA7 LINE L1 -13 6141 5845 1272 240 29 73 chr1 217982956 217983340 -64210324 + MLT1D LTR MaLR 127 493 -12 212 309 64 32 chr1 217984541 217984635 -64209029 - MIR SINE MIR -35 227 131 1599 87 0 0 chr1 217986148 217986367 -64207297 - L1P LINE L1 -5917 229 11 2614 236 56 67 chr1 217986442 217988153 -64205511 + L1MCb LINE L1 124 1813 -4751 738 263 48 16 chr1 217988129 217988380 -64205284 + L1MCa LINE L1 1 259 -6167 * 534 203 39 8 chr1 217988373 217988501 -64205163 + L1MCa LINE L1 785 916 -5510 * 23 68 0 0 chr1 217988591 217988635 -64205029 + AT_rich Low_complexity Low_complexity 1 44 0 9181 244 35 7 chr1 217989154 217990135 -64203529 + L1PA16 LINE L1 1331 2283 -4514 351 113 0 0 chr1 217990135 217990188 -64203476 + (CA)n Simple_repeat Simple_repeat 2 54 0 9181 244 35 7 chr1 217990188 217993139 -64200525 + L1PA16 LINE L1 2283 5387 -1410 5077 172 8 5 chr1 217993132 217994014 -64199650 + L1PA16 LINE L1 5928 6812 -5 * 411 276 35 0 chr1 217994459 217994575 -64199089 + MIR SINE MIR 117 236 -26 2150 103 0 20 chr1 217994766 217995067 -64198597 - AluSg SINE Alu -14 296 2 183 42 0 0 chr1 217995345 217995369 -64198295 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 2085 119 7 7 chr1 217995558 217995868 -64197796 - AluSg SINE Alu 0 310 1 201 267 0 23 chr1 217996399 217996485 -64197179 + T-rich Low_complexity Low_complexity 4 87 0 277 203 47 0 chr1 217996670 217996734 -64196930 - MLT1-int LTR MaLR -865 506 440 468 297 158 15 chr1 217997001 217997467 -64196197 - MLT1G LTR MaLR -2 588 1 363 64 0 0 chr1 217999146 217999193 -64194471 - L1P2 LINE L1 -627 5528 5482 911 226 0 47 chr1 217999274 217999486 -64194178 - MLT1A1 LTR MaLR -3 502 301 1126 246 30 30 chr1 217999576 217999910 -64193754 - MLT1A1 LTR MaLR -22 343 10 320 304 73 64 chr1 218000384 218000588 -64193076 + MIR SINE MIR 28 233 -29 284 340 50 21 chr1 218001751 218001892 -64191772 - L2 LINE L2 0 3313 3169 775 211 7 29 chr1 218001897 218002107 -64191557 - LTR1 LTR ERV1 -582 203 1 6984 73 19 0 chr1 218002177 218003454 -64190210 + L1PA7 LINE L1 4852 6150 -4 258 343 45 17 chr1 218003616 218003905 -64189759 + L1M4 LINE L1 4747 5043 -1103 27 29 0 0 chr1 218004183 218004217 -64189447 + AT_rich Low_complexity Low_complexity 1 34 0 1772 226 52 61 chr1 218005312 218005773 -64187891 - MLT2B3 LTR ERVL 0 554 98 314 172 0 109 chr1 218006061 218006350 -64187314 + (TCCA)n Simple_repeat Simple_repeat 1 257 0 219 266 0 0 chr1 218006374 218006487 -64187177 + (CAATC)n Simple_repeat Simple_repeat 1 113 0 * 648 180 0 0 chr1 218006460 218006621 -64187043 + (CAATT)n Simple_repeat Simple_repeat 2 162 0 559 184 3 45 chr1 218006623 218006948 -64186716 + (CATTC)n Satellite Satellite 1 311 0 1095 107 0 0 chr1 218006974 218007152 -64186512 + (CATTC)n Satellite Satellite 2 179 0 632 165 0 24 chr1 218007164 218007328 -64186336 + (CATTC)n Satellite Satellite 2 161 0 1275 95 0 0 chr1 218007347 218007712 -64185952 + (CATTC)n Satellite Satellite 1 365 0 760 99 0 56 chr1 218007740 218007902 -64185762 + (CATTC)n Satellite Satellite 4 156 0 1126 85 3 3 chr1 218007917 218008265 -64185399 + (CATTC)n Satellite Satellite 1 348 0 791 148 0 22 chr1 218008307 218008490 -64185174 + (CATTC)n Satellite Satellite 2 180 0 282 29 0 0 chr1 218008506 218008541 -64185123 + (CATTC)n Satellite Satellite 2 36 0 1299 72 0 0 chr1 218008560 218008740 -64184924 + (CATTC)n Satellite Satellite 1 180 0 757 120 5 23 chr1 218008756 218008980 -64184684 + (CATTC)n Satellite Satellite 1 219 0 1140 126 0 0 chr1 218008995 218009330 -64184334 + (CATTC)n Satellite Satellite 1 335 0 1152 129 1 11 chr1 218009345 218010332 -64183332 + (CATTC)n Satellite Satellite 1 977 0 1033 93 3 52 chr1 218010346 218010878 -64182786 + (CATTC)n Satellite Satellite 4 347 0 401 170 9 0 chr1 218010894 218011006 -64182658 + (CATTC)n Satellite Satellite 2 114 0 843 133 0 0 chr1 218011018 218011183 -64182481 + (CATTC)n Satellite Satellite 2 166 0 1144 104 5 5 chr1 218011198 218011637 -64182027 + (CATTC)n Satellite Satellite 1 439 0 825 110 0 0 chr1 218011648 218011793 -64181871 + (CATTC)n Satellite Satellite 2 146 0 1210 103 7 4 chr1 218011808 218012389 -64181275 + (CATTC)n Satellite Satellite 1 583 0 905 120 0 27 chr1 218012435 218012619 -64181045 + (CATTC)n Satellite Satellite 2 180 0 366 23 0 0 chr1 218012630 218012673 -64180991 + (CATTC)n Satellite Satellite 2 44 0 939 134 0 0 chr1 218012685 218012864 -64180800 + (CATTC)n Satellite Satellite 2 180 0 723 137 6 22 chr1 218012880 218013062 -64180602 + (CATTC)n Satellite Satellite 2 180 0 1044 106 0 0 chr1 218013077 218013256 -64180408 + (CATTC)n Satellite Satellite 1 179 0 1119 128 3 3 chr1 218013268 218013675 -64179989 + (CATTC)n Satellite Satellite 1 407 0 1167 107 3 20 chr1 218013687 218014022 -64179642 + (CATTC)n Satellite Satellite 2 330 0 891 139 2 0 chr1 218014037 218014513 -64179151 + (CATTC)n Satellite Satellite 1 477 0 1120 97 3 17 chr1 218014525 218014885 -64178779 + (CATTC)n Satellite Satellite 1 355 0 1143 118 2 32 chr1 218014899 218015348 -64178316 + (CATTC)n Satellite Satellite 1 435 0 996 128 0 0 chr1 218015364 218015543 -64178121 + (CATTC)n Satellite Satellite 2 180 0 1122 109 0 11 chr1 218015574 218016099 -64177565 + (CATTC)n Satellite Satellite 1 519 0 849 143 3 40 chr1 218016115 218016451 -64177213 + (CATTC)n Satellite Satellite 1 323 0 1200 91 0 24 chr1 218016462 218016735 -64176929 + (CATTC)n Satellite Satellite 2 267 0 1125 81 0 48 chr1 218016761 218017121 -64176543 + (CATTC)n Satellite Satellite 1 343 0 924 145 3 19 chr1 218017137 218017439 -64176225 + (CATTC)n Satellite Satellite 2 298 0 486 211 0 0 chr1 218017461 218017636 -64176028 + (CATTC)n Satellite Satellite 2 176 0 1023 107 0 0 chr1 218017651 218017861 -64175803 + (CATTC)n Satellite Satellite 1 210 0 1161 115 0 22 chr1 218017876 218018411 -64175253 + (CATTC)n Satellite Satellite 2 349 0 355 174 17 0 chr1 218018427 218018542 -64175122 + (CATTC)n Satellite Satellite 3 119 0 915 127 0 0 chr1 218018554 218018727 -64174937 + (CATTC)n Satellite Satellite 2 174 0 891 120 6 33 chr1 218018739 218019271 -64174393 + (CATTC)n Satellite Satellite 2 348 0 446 162 8 0 chr1 218019286 218019403 -64174261 + (CATTC)n Satellite Satellite 2 119 0 939 129 0 0 chr1 218019415 218019593 -64174071 + (CATTC)n Satellite Satellite 2 179 0 889 100 0 53 chr1 218019619 218019809 -64173855 + (CATTC)n Satellite Satellite 1 180 0 1068 107 0 36 chr1 218019849 218020223 -64173441 + (CATTC)n Satellite Satellite 1 360 0 1068 111 0 0 chr1 218020243 218020423 -64173241 + (CATTC)n Satellite Satellite 1 180 0 1035 130 0 28 chr1 218020444 218020863 -64172801 + (CATTC)n Satellite Satellite 1 407 0 924 136 0 0 chr1 218020876 218021052 -64172612 + (CATTC)n Satellite Satellite 4 179 0 1125 143 2 8 chr1 218021068 218022036 -64171628 + (CATTC)n Satellite Satellite 1 962 0 1063 81 12 0 chr1 218022052 218022225 -64171439 + (CATTC)n Satellite Satellite 2 176 0 798 153 0 0 chr1 218022240 218022417 -64171247 + (CATTC)n Satellite Satellite 2 178 0 757 141 0 27 chr1 218022468 218022653 -64171011 + (CATTC)n Satellite Satellite 1 180 0 863 114 0 24 chr1 218022684 218022851 -64170813 + (CATTC)n Satellite Satellite 2 164 0 1200 106 2 9 chr1 218022863 218023402 -64170262 + (CATTC)n Satellite Satellite 1 535 0 957 128 0 0 chr1 218023437 218023617 -64170047 + (CATTC)n Satellite Satellite 1 180 0 449 60 0 60 chr1 218023650 218023733 -64169931 + (CATTC)n Satellite Satellite 4 81 0 1099 89 6 6 chr1 218023752 218023932 -64169732 + (CATTC)n Satellite Satellite 1 180 0 750 169 0 0 chr1 218023954 218024120 -64169544 + (CATTC)n Satellite Satellite 4 169 0 951 126 5 22 chr1 218024136 218024499 -64169165 + (CATTC)n Satellite Satellite 1 358 0 1026 134 0 7 chr1 218024514 218025208 -64168456 + (CATTC)n Satellite Satellite 1 688 0 1101 137 0 0 chr1 218025228 218025568 -64168096 + (CATTC)n Satellite Satellite 1 340 0 1122 100 0 0 chr1 218025593 218025773 -64167891 + (CATTC)n Satellite Satellite 1 180 0 981 135 0 15 chr1 218025800 218026438 -64167226 + (CATTC)n Satellite Satellite 1 628 0 264 30 0 0 chr1 218026451 218026484 -64167180 + (CATTC)n Satellite Satellite 4 36 0 938 67 0 77 chr1 218026503 218026698 -64166966 + (CATTC)n Satellite Satellite 1 180 0 1017 124 2 4 chr1 218026714 218027213 -64166451 + (CATTC)n Satellite Satellite 1 497 0 767 112 5 53 chr1 218027249 218027436 -64166228 + (CATTC)n Satellite Satellite 1 178 0 915 153 6 9 chr1 218027454 218027953 -64165711 + (CATTC)n Satellite Satellite 2 320 0 1122 100 3 16 chr1 218027968 218028327 -64165337 + (CATTC)n Satellite Satellite 2 355 0 791 142 5 0 chr1 218028343 218028564 -64165100 + (CATTC)n Satellite Satellite 1 222 0 1179 99 0 0 chr1 218028581 218028901 -64164763 + (CATTC)n Satellite Satellite 1 320 0 1113 101 0 0 chr1 218028916 218029095 -64164569 + (CATTC)n Satellite Satellite 2 180 0 611 177 6 0 chr1 218029116 218029280 -64164384 + (CATTC)n Satellite Satellite 2 166 0 754 117 0 31 chr1 218029295 218029458 -64164206 + (CATTC)n Satellite Satellite 2 159 0 906 148 0 0 chr1 218029473 218030104 -64163560 + (CATTC)n Satellite Satellite 1 631 0 1191 126 0 22 chr1 218030120 218030434 -64163230 + (CATTC)n Satellite Satellite 2 308 0 1203 95 3 27 chr1 218030469 218030842 -64162822 + (CATTC)n Satellite Satellite 1 364 0 1078 98 3 15 chr1 218030856 218031251 -64162413 + (CATTC)n Satellite Satellite 1 389 0 897 122 0 0 chr1 218031300 218031521 -64162143 + (CATTC)n Satellite Satellite 1 221 0 785 123 0 25 chr1 218031533 218031695 -64161969 + (CATTC)n Satellite Satellite 2 159 0 906 121 2 37 chr1 218031707 218032145 -64161519 + (CATTC)n Satellite Satellite 1 422 0 1074 139 3 0 chr1 218032157 218032503 -64161161 + (CATTC)n Satellite Satellite 1 347 0 1128 101 0 0 chr1 218032520 218032698 -64160966 + (CATTC)n Satellite Satellite 2 179 0 653 158 0 24 chr1 218032710 218032874 -64160790 + (CATTC)n Satellite Satellite 2 161 0 1275 72 0 0 chr1 218032893 218033073 -64160591 + (CATTC)n Satellite Satellite 1 180 0 990 117 0 0 chr1 218033084 218033263 -64160401 + (CATTC)n Satellite Satellite 2 180 0 793 93 0 56 chr1 218033291 218033453 -64160211 + (CATTC)n Satellite Satellite 4 156 0 1071 123 2 10 chr1 218033472 218034687 -64158977 + (CATTC)n Satellite Satellite 1 1204 0 537 144 0 0 chr1 218034708 218034826 -64158838 + (CATTC)n Satellite Satellite 4 121 0 1032 92 0 0 chr1 218034841 218035004 -64158660 + (CATTC)n Satellite Satellite 2 164 0 810 124 0 0 chr1 218035016 218035169 -64158495 + (CATTC)n Satellite Satellite 2 154 0 1026 107 0 0 chr1 218035181 218035349 -64158315 + (CATTC)n Satellite Satellite 2 169 0 1134 132 0 0 chr1 218035361 218035775 -64157889 + (CATTC)n Satellite Satellite 1 414 0 264 91 0 0 chr1 218035791 218035835 -64157829 + (CATTC)n Satellite Satellite 2 45 0 1120 101 3 3 chr1 218036577 218036941 -64156723 + (CATTC)n Satellite Satellite 1 364 0 1005 115 3 41 chr1 218036961 218037335 -64156329 + (CATTC)n Satellite Satellite 1 360 0 1089 119 2 26 chr1 218037351 218037794 -64155870 + (CATTC)n Satellite Satellite 1 432 0 1299 115 0 26 chr1 218037810 218038722 -64154942 + (CATTC)n Satellite Satellite 1 887 0 991 115 6 23 chr1 218038736 218039084 -64154580 + (CATTC)n Satellite Satellite 4 343 0 473 147 9 0 chr1 218039099 218039208 -64154456 + (CATTC)n Satellite Satellite 2 111 0 1035 117 0 0 chr1 218039232 218039412 -64154252 + (CATTC)n Satellite Satellite 1 180 0 1078 94 6 6 chr1 218039452 218039632 -64154032 + (CATTC)n Satellite Satellite 1 180 0 801 119 4 38 chr1 218039648 218039915 -64153749 + (CATTC)n Satellite Satellite 1 258 0 1035 133 0 0 chr1 218039927 218040321 -64153343 + (CATTC)n Satellite Satellite 1 394 0 1003 104 3 44 chr1 218040335 218040710 -64152954 + (CATTC)n Satellite Satellite 1 360 0 494 138 9 0 chr1 218040726 218040835 -64152829 + (CATTC)n Satellite Satellite 2 111 0 1146 109 0 4 chr1 218040850 218041609 -64152055 + (CATTC)n Satellite Satellite 1 755 0 746 142 5 0 chr1 218041625 218041844 -64151820 + (CATTC)n Satellite Satellite 1 220 0 1179 130 0 9 chr1 218041859 218042214 -64151450 + (CATTC)n Satellite Satellite 1 351 0 978 112 0 0 chr1 218042229 218042398 -64151266 + (CATTC)n Satellite Satellite 2 170 0 489 175 0 4 chr1 218042420 218042727 -64150937 + (CATTC)n Satellite Satellite 3 250 0 879 134 4 28 chr1 218042753 218043606 -64150058 + (CATTC)n Satellite Satellite 1 832 0 1026 133 2 8 chr1 218043618 218044465 -64149199 + (CATTC)n Satellite Satellite 1 842 0 1144 114 2 30 chr1 218044481 218044969 -64148695 + (CATTC)n Satellite Satellite 1 474 0 1146 87 0 0 chr1 218045015 218045188 -64148476 + (CATTC)n Satellite Satellite 2 174 0 831 82 0 68 chr1 218045200 218045429 -64148235 + (CATTC)n Satellite Satellite 1 213 0 1011 114 1 40 chr1 218045455 218046311 -64147353 + (CATTC)n Satellite Satellite 1 822 0 324 119 0 0 chr1 218046327 218046386 -64147278 + (CATTC)n Satellite Satellite 2 60 0 234 62 0 0 chr1 218046521 218046553 -64147111 + (CATTC)n Satellite Satellite 5 36 0 962 137 3 19 chr1 218046568 218047181 -64146483 + (CATTC)n Satellite Satellite 1 603 0 1139 106 0 0 chr1 218047192 218047371 -64146293 + (CATTC)n Satellite Satellite 2 180 0 1177 81 3 34 chr1 218047389 218047756 -64145908 + (CATTC)n Satellite Satellite 4 356 0 839 121 3 39 chr1 218047772 218048145 -64145519 + (CATTC)n Satellite Satellite 1 359 0 866 123 6 0 chr1 218048173 218048335 -64145329 + (CATTC)n Satellite Satellite 4 166 0 1143 94 0 0 chr1 218048354 218048534 -64145130 + (CATTC)n Satellite Satellite 1 180 0 542 182 6 0 chr1 218048555 218048714 -64144950 + (CATTC)n Satellite Satellite 2 161 0 1143 135 0 0 chr1 218048729 218049064 -64144600 + (CATTC)n Satellite Satellite 1 335 0 1014 122 0 0 chr1 218049083 218049263 -64144401 + (CATTC)n Satellite Satellite 1 180 0 1185 96 0 0 chr1 218049284 218049462 -64144202 + (CATTC)n Satellite Satellite 2 179 0 810 90 4 45 chr1 218049474 218049703 -64143961 + (CATTC)n Satellite Satellite 1 219 0 1212 71 0 0 chr1 218049718 218049886 -64143778 + (CATTC)n Satellite Satellite 2 169 0 875 116 0 28 chr1 218049898 218050079 -64143585 + (CATTC)n Satellite Satellite 2 177 0 329 109 16 0 chr1 218050103 218050167 -64143497 + (CATTC)n Satellite Satellite 2 66 0 1095 94 0 0 chr1 218050182 218050353 -64143311 + (CATTC)n Satellite Satellite 2 172 0 833 124 0 27 chr1 218050366 218050551 -64143113 + (CATTC)n Satellite Satellite 1 180 0 978 143 0 6 chr1 218050567 218051047 -64142617 + (CATTC)n Satellite Satellite 1 477 0 1077 101 0 0 chr1 218051062 218051285 -64142379 + (CATTC)n Satellite Satellite 1 223 0 837 150 0 0 chr1 218051301 218051481 -64142183 + (CATTC)n Satellite Satellite 1 180 0 1046 130 3 13 chr1 218051517 218051808 -64141856 + (CATTC)n Satellite Satellite 1 288 0 1056 109 3 20 chr1 218051820 218052168 -64141496 + (CATTC)n Satellite Satellite 2 343 0 333 47 0 0 chr1 218052182 218052225 -64141439 + (CATTC)n Satellite Satellite 4 46 0 1095 117 1 10 chr1 218052337 218053123 -64140541 + (CATTC)n Satellite Satellite 1 779 0 933 157 0 6 chr1 218053145 218053487 -64140177 + (CATTC)n Satellite Satellite 3 341 0 837 150 0 0 chr1 218053503 218053683 -64139981 + (CATTC)n Satellite Satellite 1 180 0 1164 108 0 19 chr1 218053719 218054331 -64139333 + (CATTC)n Satellite Satellite 1 600 0 1045 117 3 37 chr1 218054345 218054887 -64138777 + (CATTC)n Satellite Satellite 4 351 0 924 138 3 2 chr1 218054903 218055525 -64138139 + (CATTC)n Satellite Satellite 1 623 0 1188 130 3 0 chr1 218055540 218055893 -64137771 + (CATTC)n Satellite Satellite 1 354 0 985 112 6 6 chr1 218055906 218056084 -64137580 + (CATTC)n Satellite Satellite 3 180 0 818 136 0 27 chr1 218056100 218056284 -64137380 + (CATTC)n Satellite Satellite 2 180 0 561 144 0 0 chr1 218056297 218056415 -64137249 + (CATTC)n Satellite Satellite 4 121 0 1011 129 2 2 chr1 218056430 218057027 -64136637 + (CATTC)n Satellite Satellite 1 597 0 1231 104 4 21 chr1 218057043 218057940 -64135724 + (CATTC)n Satellite Satellite 1 881 0 785 123 0 25 chr1 218057952 218058114 -64135550 + (CATTC)n Satellite Satellite 2 159 0 997 131 6 3 chr1 218058126 218058455 -64135209 + (CATTC)n Satellite Satellite 1 330 0 1062 145 0 3 chr1 218058470 218058820 -64134844 + (CATTC)n Satellite Satellite 2 350 0 1056 103 0 0 chr1 218058835 218059009 -64134655 + (CATTC)n Satellite Satellite 2 175 0 1320 103 0 12 chr1 218059020 218059450 -64134214 + (CATTC)n Satellite Satellite 1 425 0 1122 100 0 0 chr1 218059469 218059649 -64134015 + (CATTC)n Satellite Satellite 1 180 0 1080 131 2 8 chr1 218059670 218060851 -64132813 + (CATTC)n Satellite Satellite 1 1173 0 1101 148 0 6 chr1 218060873 218061230 -64132434 + (CATTC)n Satellite Satellite 3 356 0 1164 115 1 22 chr1 218061242 218062093 -64131571 + (CATTC)n Satellite Satellite 1 833 0 1122 119 3 18 chr1 218062114 218062760 -64130904 + (CATTC)n Satellite Satellite 1 636 0 981 128 0 0 chr1 218062788 218062968 -64130696 + (CATTC)n Satellite Satellite 1 180 0 962 128 3 32 chr1 218062989 218063346 -64130318 + (CATTC)n Satellite Satellite 2 347 0 795 103 0 72 chr1 218063372 218063566 -64130098 + (CATTC)n Satellite Satellite 1 180 0 1135 135 4 15 chr1 218063577 218064394 -64129270 + (CATTC)n Satellite Satellite 1 807 0 984 103 0 0 chr1 218064409 218064574 -64129090 + (CATTC)n Satellite Satellite 2 166 0 1008 126 0 4 chr1 218064589 218064849 -64128815 + (CATTC)n Satellite Satellite 2 260 0 766 126 6 28 chr1 218064864 218065046 -64128618 + (CATTC)n Satellite Satellite 2 179 0 267 192 0 0 chr1 218065058 218065136 -64128528 + (CATTC)n Satellite Satellite 2 79 0 837 93 0 72 chr1 218065152 218065346 -64128318 + (CATTC)n Satellite Satellite 1 180 0 1102 135 2 14 chr1 218065357 218066397 -64127267 + (CATTC)n Satellite Satellite 1 1028 0 462 119 0 0 chr1 218066414 218066498 -64127166 + (CATTC)n Satellite Satellite 3 86 0 1146 107 2 21 chr1 218066513 218067061 -64126603 + (CATTC)n Satellite Satellite 1 537 0 1221 93 3 18 chr1 218067098 218067431 -64126233 + (CATTC)n Satellite Satellite 2 329 0 1063 81 12 0 chr1 218067447 218067620 -64126044 + (CATTC)n Satellite Satellite 2 176 0 798 153 0 0 chr1 218067635 218067812 -64125852 + (CATTC)n Satellite Satellite 2 178 0 253 308 116 0 chr1 218167831 218168003 -64025661 + L1MEc LINE L1 752 943 -5453 622 198 19 93 chr1 218168015 218168177 -64025487 + L1M3a LINE L1 13 162 -5793 704 247 5 21 chr1 218168399 218168411 -64025253 + L1M3a LINE L1 2664 2675 -3359 1784 172 17 0 chr1 218168411 218168713 -64024951 - AluSx SINE Alu -5 307 1 704 247 5 21 chr1 218168713 218168894 -64024770 + L1M3a LINE L1 2675 2854 -3180 21 36 0 0 chr1 218169223 218169251 -64024413 + AT_rich Low_complexity Low_complexity 1 28 0 412 372 78 43 chr1 218169688 218169980 -64023684 + L2 LINE L2 2241 2521 -793 2123 104 3 7 chr1 218169980 218170277 -64023387 - AluSg SINE Alu -14 296 1 412 372 78 43 chr1 218170277 218170546 -64023118 + L2 LINE L2 2521 2822 -492 329 351 29 6 chr1 218171491 218171662 -64022002 + MIR SINE MIR 82 256 -6 282 172 0 0 chr1 218171879 218171937 -64021727 + L1MA8 LINE L1 6224 6281 -10 22 0 0 0 chr1 218172057 218172079 -64021585 + AT_rich Low_complexity Low_complexity 1 22 0 272 294 24 12 chr1 218172549 218172634 -64021030 + L2 LINE L2 3224 3309 -4 4464 195 19 11 chr1 218173007 218174474 -64019190 + L1PA16 LINE L1 4683 6164 -2 1065 235 17 13 chr1 218174939 218175173 -64018491 + MER76 LTR ERV 1 235 -453 398 272 183 21 chr1 218175229 218175687 -64017977 - L1MC4 LINE L1 -41 8001 7346 352 256 92 37 chr1 218175704 218175868 -64017796 + MER76 LTR ERV 217 389 -299 536 244 89 12 chr1 218175923 218176091 -64017573 + MER76 LTR ERV 508 688 0 3618 137 86 51 chr1 218176296 218177055 -64016609 - LTR1 LTR ERV1 0 785 1 359 359 0 8 chr1 218177261 218177389 -64016275 - L2 LINE L2 -1 3312 3186 228 211 0 0 chr1 218177922 218177998 -64015666 + (TA)n Simple_repeat Simple_repeat 2 77 0 407 136 25 144 chr1 218177999 218178117 -64015547 + MER76 LTR ERV 585 688 0 373 301 0 10 chr1 218178315 218178418 -64015246 - MIR SINE MIR -52 210 109 180 25 0 75 chr1 218178457 218178497 -64015167 + (TA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chr1 218179363 218179391 -64014273 + AT_rich Low_complexity Low_complexity 1 28 0 4289 205 37 30 chr1 218179726 218181192 -64012472 - L1MA6 LINE L1 -6 6996 5535 4127 241 49 12 chr1 218181206 218182732 -64010932 - L1MA6 LINE L1 -2648 4200 2620 492 18 0 0 chr1 218182939 218182996 -64010668 + (TG)n Simple_repeat Simple_repeat 2 58 0 490 292 12 0 chr1 218182998 218183159 -64010505 - L1 LINE L1 -3327 3521 3359 5049 146 4 0 chr1 218183167 218183978 -64009686 + L1PB2 LINE L1 5335 6148 -3 200 35 35 0 chr1 218184004 218184033 -64009631 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 582 194 48 0 chr1 218184033 218184157 -64009507 - L1MA6 LINE L1 -4421 2428 2299 1815 233 50 2 chr1 218184195 218184633 -64009031 - L1 LINE L1 -4167 2682 2224 486 307 36 18 chr1 218184647 218184813 -64008851 - L1 LINE L1 -5284 1565 1397 230 392 0 0 chr1 218186415 218186517 -64007147 - L2 LINE L2 -276 3037 2936 2480 50 0 25 chr1 218186521 218186840 -64006824 + AluY SINE Alu 1 311 0 21 0 0 0 chr1 218187688 218187709 -64005955 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 218187865 218187893 -64005771 + AT_rich Low_complexity Low_complexity 1 28 0 2766 39 0 0 chr1 218187893 218188224 -64005440 - L1PA7 LINE L1 -8 6146 5816 3454 58 7 2 chr1 218188224 218188669 -64004995 + L1PA7 LINE L1 5368 5814 -340 2367 64 3 0 chr1 218189225 218189521 -64004143 + AluY SINE Alu 2 298 -13 24 0 0 0 chr1 218189751 218189775 -64003889 + AT_rich Low_complexity Low_complexity 1 24 0 419 212 0 124 chr1 218190277 218190414 -64003250 + AluJb SINE Alu 70 189 -113 234 353 125 0 chr1 218190498 218190634 -64003030 + MIR SINE MIR 48 200 -62 1221 227 32 0 chr1 218190839 218191086 -64002578 + AluJb SINE Alu 22 276 -36 483 211 11 0 chr1 218191086 218191176 -64002488 - AluJo SINE Alu -86 226 136 588 241 0 15 chr1 218191178 218191311 -64002353 - AluJo SINE Alu -171 131 1 679 0 0 34 chr1 218191319 218191408 -64002256 + (TTTTA)n Simple_repeat Simple_repeat 1 86 0 1649 161 0 4 chr1 218191408 218191675 -64001989 - L1PA15 LINE L1 -26 6139 5874 383 289 0 66 chr1 218191666 218191832 -64001832 + L1MEc LINE L1 1512 1666 -4730 * 2240 40 1 15 chr1 218191846 218192136 -64001528 + L1HS LINE L1 5869 6155 0 4157 258 33 10 chr1 218192290 218194728 -63998936 + L1MB7 LINE L1 3340 5834 -350 8663 211 48 52 chr1 218195384 218197285 -63996379 - L1MC3 LINE L1 -11 7774 5884 2104 196 22 70 chr1 218197285 218197867 -63995797 - MLT2B3 LTR ERVL 0 554 1 8663 211 48 52 chr1 218197867 218198365 -63995299 - L1MC3 LINE L1 -1901 5884 5385 2109 79 7 34 chr1 218198366 218198687 -63994977 + AluY SINE Alu 1 313 0 249 83 0 0 chr1 218198711 218198747 -63994917 + (TG)n Simple_repeat Simple_repeat 1 36 0 10548 138 22 7 chr1 218198794 218200483 -63993181 + L1PA15 LINE L1 1808 3530 -2616 320 43 0 21 chr1 218200483 218200530 -63993134 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 10548 138 22 7 chr1 218200530 218200681 -63992983 + L1PA15 LINE L1 3530 3677 -2469 2086 146 17 9 chr1 218200667 218201017 -63992647 + L1PA15 LINE L1 5505 5857 -308 * 819 93 0 0 chr1 218201120 218201238 -63992426 + L1PA15 LINE L1 6041 6158 -7 257 270 0 0 chr1 218201599 218201673 -63991991 - MLT1K LTR MaLR -4 584 511 279 93 0 0 chr1 218201765 218201808 -63991856 + (TC)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr1 218201929 218201958 -63991706 + AT_rich Low_complexity Low_complexity 1 29 0 229 192 39 0 chr1 218202146 218202198 -63991466 - MLT1L LTR MaLR -543 72 19 470 109 0 0 chr1 218203262 218203326 -63990338 - THE1C LTR MaLR 0 375 312 356 259 123 68 chr1 218204745 218205054 -63988610 - L1M4 LINE L1 -2659 3487 3162 314 345 78 21 chr1 218205815 218205957 -63987707 - L1ME LINE L1 -5890 180 31 27 0 0 0 chr1 218207459 218207486 -63986178 + AT_rich Low_complexity Low_complexity 1 27 0 326 339 51 0 chr1 218207543 218207661 -63986003 + MLT1I LTR MaLR 1 124 -285 223 360 11 0 chr1 218209425 218209514 -63984150 + L2 LINE L2 1871 1960 -1354 620 271 105 66 chr1 218209957 218210529 -63983135 - Charlie7 DNA MER1_type -532 2080 1487 225 0 0 0 chr1 218210847 218210872 -63982792 + (TG)n Simple_repeat Simple_repeat 2 26 0 319 293 0 0 chr1 218210872 218210954 -63982710 + L1MC4 LINE L1 6614 6695 -1347 * 330 302 0 0 chr1 218210886 218210972 -63982692 - L1MC4 LINE L1 -1339 6703 6618 231 36 0 0 chr1 218211111 218211139 -63982525 + (TA)n Simple_repeat Simple_repeat 2 29 0 23 33 0 0 chr1 218211866 218211896 -63981768 + AT_rich Low_complexity Low_complexity 1 30 0 247 165 31 21 chr1 218212367 218212464 -63981200 + (TA)n Simple_repeat Simple_repeat 1 98 0 319 189 45 15 chr1 218212528 218212660 -63981004 + (TA)n Simple_repeat Simple_repeat 2 137 0 26 30 0 0 chr1 218213766 218213799 -63979865 + AT_rich Low_complexity Low_complexity 1 33 0 454 311 168 14 chr1 218213883 218214311 -63979353 - MLT1G LTR MaLR -41 549 79 192 333 69 0 chr1 218214494 218214566 -63979098 - MIR3 SINE MIR -54 154 78 27 0 0 0 chr1 218214741 218214768 -63978896 + AT_rich Low_complexity Low_complexity 1 27 0 2687 3 3 0 chr1 218216117 218216415 -63977249 + AluYa5 SINE Alu 1 299 -12 1669 151 4 0 chr1 218216623 218216894 -63976770 + AluSg SINE Alu 1 272 -38 312 155 14 0 chr1 218217148 218217219 -63976445 + L1PA15 LINE L1 6092 6163 -2 6639 222 28 18 chr1 218217220 218219304 -63974360 + L1MC3 LINE L1 5318 7597 -188 31 58 0 0 chr1 218219534 218219586 -63974078 + AT_rich Low_complexity Low_complexity 1 52 0 34 65 0 0 chr1 218222107 218222169 -63971495 + AT_rich Low_complexity Low_complexity 1 62 0 2409 165 26 56 chr1 218222183 218222664 -63971000 - L1MA6 LINE L1 0 6300 5835 1547 173 7 33 chr1 218222664 218222965 -63970699 - AluSx SINE Alu -17 295 3 2409 165 26 56 chr1 218222965 218223022 -63970642 - L1MA6 LINE L1 -465 5835 5778 1255 179 81 0 chr1 218223040 218223313 -63970351 + AluSx SINE Alu 15 309 -3 2264 189 33 20 chr1 218223332 218224050 -63969614 - L1MA6 LINE L1 -532 5768 5044 292 212 15 0 chr1 218224110 218224176 -63969488 + MER58 DNA MER1_type 2350 2416 -4 1001 43 0 0 chr1 218225027 218225180 -63968484 + L1PA3 LINE L1 6015 6167 0 25 0 0 0 chr1 218225580 218225605 -63968059 + AT_rich Low_complexity Low_complexity 1 25 0 379 128 23 0 chr1 218226127 218226213 -63967451 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 291 161 0 0 chr1 218227501 218227557 -63966107 + GA-rich Low_complexity Low_complexity 4 59 0 981 338 46 58 chr1 218228345 218228993 -63964671 - L1M2b LINE L1 -6156 1053 315 9550 64 8 80 chr1 218228993 218230457 -63963207 + SVA Other Other 29 1386 0 981 338 46 58 chr1 218230457 218230553 -63963111 - L1M2b LINE L1 -6894 315 219 266 199 139 80 chr1 218231051 218231067 -63962597 - L1P5 LINE L1 -300 5854 5839 432 210 84 72 chr1 218231067 218231234 -63962430 - L1MA6 LINE L1 -469 5831 5663 1521 184 11 31 chr1 218231273 218231626 -63962038 + L1MA8 LINE L1 5813 6158 -133 4437 65 2 2 chr1 218231635 218232207 -63961457 - L1PA5 LINE L1 -2 6152 5581 2893 107 23 7 chr1 218232207 218232712 -63960952 + L1MA8 LINE L1 4047 6290 -1 189 0 0 0 chr1 218233502 218233523 -63960141 + (CAA)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr1 218233750 218233785 -63959879 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 218234108 218234131 -63959533 + AT_rich Low_complexity Low_complexity 1 23 0 412 154 13 39 chr1 218234348 218234426 -63959238 - MSTB1 LTR MaLR -11 421 346 201 39 0 0 chr1 218234438 218234464 -63959200 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1434 149 112 0 chr1 218234466 218234715 -63958949 - AluSx SINE Alu -32 280 4 1426 226 108 9 chr1 218234718 218235041 -63958623 - MSTB1 LTR MaLR -73 359 5 2117 135 7 0 chr1 218235637 218235940 -63957724 + AluSx SINE Alu 4 308 -4 26 64 0 0 chr1 218236188 218236235 -63957429 + AT_rich Low_complexity Low_complexity 1 47 0 31 0 0 0 chr1 218238219 218238250 -63955414 + AT_rich Low_complexity Low_complexity 1 31 0 1844 157 3 0 chr1 218238827 218239121 -63954543 - AluSx SINE Alu -17 295 1 612 145 8 40 chr1 218239359 218239483 -63954181 - L1MA9 LINE L1 -116 6196 6077 389 250 11 0 chr1 218240195 218240287 -63953377 + MLT1E3 LTR MaLR 70 162 -462 457 302 17 17 chr1 218240711 218240890 -63952774 - MER3 DNA MER1_type -2 207 29 1945 123 0 14 chr1 218241092 218241377 -63952287 + AluSx SINE Alu 1 281 -31 1360 41 0 0 chr1 218241377 218241546 -63952118 - L1PA4 LINE L1 0 6155 5987 241 250 59 44 chr1 218242295 218242431 -63951233 + MLT1L LTR MaLR 477 614 -1 1446 166 56 10 chr1 218242678 218242980 -63950684 - L1MA4 LINE L1 -2 6298 5983 25 0 0 0 chr1 218243014 218243039 -63950625 + AT_rich Low_complexity Low_complexity 1 25 0 204 319 62 26 chr1 218244270 218244383 -63949281 + L2 LINE L2 3196 3312 -1 24 0 0 0 chr1 218244997 218245021 -63948643 + AT_rich Low_complexity Low_complexity 1 24 0 29 90 0 0 chr1 218245691 218245769 -63947895 + AT_rich Low_complexity Low_complexity 1 78 0 31 0 0 0 chr1 218246568 218246599 -63947065 + AT_rich Low_complexity Low_complexity 1 31 0 4707 147 54 21 chr1 218247591 218248465 -63945199 - MER4D LTR ERV1 0 903 1 210 320 13 0 chr1 218248879 218248954 -63944710 + CT-rich Low_complexity Low_complexity 3 78 0 279 93 0 0 chr1 218250252 218250295 -63943369 + (GA)n Simple_repeat Simple_repeat 1 43 0 3397 153 36 2 chr1 218250592 218251169 -63942495 + LTR38B LTR ERV1 1 597 -13 23325 139 9 70 chr1 218251213 218253705 -63939959 + L1PA8A LINE L1 3 2646 -3800 226 213 0 0 chr1 218253705 218253752 -63939912 - Alu SINE Alu -74 229 183 * 367 200 0 0 chr1 218253749 218253814 -63939850 + Alu SINE Alu 236 300 -2 * 23325 139 9 70 chr1 218253752 218258034 -63935630 + L1PA8A LINE L1 2646 6445 -1 36 23 0 0 chr1 218258128 218258171 -63935493 + AT_rich Low_complexity Low_complexity 1 43 0 192 40 0 0 chr1 218258563 218258588 -63935076 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 27 49 0 0 chr1 218259181 218259222 -63934442 + AT_rich Low_complexity Low_complexity 1 41 0 492 228 85 80 chr1 218259574 218260134 -63933530 - L1MC4 LINE L1 -323 7462 6906 1052 133 0 6 chr1 218260134 218260315 -63933349 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 492 228 85 80 chr1 218260315 218261017 -63932647 - L1MC4 LINE L1 -879 6906 6245 * 973 230 20 47 chr1 218261009 218261321 -63932343 - L1MC3 LINE L1 -309 5855 5553 2018 125 0 20 chr1 218262473 218262776 -63930888 + AluSq SINE Alu 1 297 -16 26 0 0 0 chr1 218263102 218263128 -63930536 + AT_rich Low_complexity Low_complexity 1 26 0 2403 59 0 0 chr1 218263649 218263938 -63929726 - AluY SINE Alu -11 300 12 244 257 120 27 chr1 218264059 218264242 -63929422 + L1MB7 LINE L1 5969 6168 -16 1341 292 99 22 chr1 218265025 218265559 -63928105 + MLT1E2 LTR MaLR 52 626 0 222 37 0 0 chr1 218265824 218265851 -63927813 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 408 123 68 0 chr1 218265851 218265924 -63927740 - L1PA16 LINE L1 -8 6158 6081 1733 176 14 78 chr1 218266151 218266304 -63927360 + MER1B DNA MER1_type 1 162 -2550 1524 209 3 3 chr1 218266304 218266615 -63927049 + AluJb SINE Alu 1 311 -1 1733 176 14 78 chr1 218266615 218266820 -63926844 + MER1B DNA MER1_type 162 336 -3 378 318 85 0 chr1 218268455 218268631 -63925033 - MIR SINE MIR -52 210 20 70 54 0 0 chr1 218268759 218268871 -63924793 + AT_rich Low_complexity Low_complexity 1 112 0 22 56 0 0 chr1 218269163 218269199 -63924465 + AT_rich Low_complexity Low_complexity 1 36 0 221 333 71 66 chr1 218269720 218269918 -63923746 + MIR SINE MIR 8 206 -56 21 71 0 0 chr1 218270647 218270689 -63922975 + AT_rich Low_complexity Low_complexity 1 42 0 32 0 0 43 chr1 218270754 218270777 -63922887 + AT_rich Low_complexity Low_complexity 1 23 -22 2132 91 0 0 chr1 218270777 218271053 -63922611 - AluSc SINE Alu -8 301 26 32 0 0 43 chr1 218271053 218271076 -63922588 + AT_rich Low_complexity Low_complexity 23 45 0 1027 256 32 35 chr1 218271092 218271439 -63922225 - L1MC3 LINE L1 -270 7515 7170 251 216 0 0 chr1 218271441 218271492 -63922172 - MLT1F1 LTR MaLR -456 111 61 24 32 0 0 chr1 218271524 218271555 -63922109 + AT_rich Low_complexity Low_complexity 1 31 0 731 309 42 3 chr1 218271571 218271956 -63921708 - L1M4 LINE L1 -2155 3991 3592 198 0 0 0 chr1 218271958 218271980 -63921684 + (T)n Simple_repeat Simple_repeat 1 22 0 423 188 0 0 chr1 218272001 218272081 -63921583 - L1PA15 LINE L1 -221 5944 5865 8182 237 28 46 chr1 218272137 218275308 -63918356 - L1 LINE L1 -1270 4876 1763 21 0 0 0 chr1 218275384 218275405 -63918259 + AT_rich Low_complexity Low_complexity 1 21 0 1935 59 0 0 chr1 218275535 218275773 -63917891 + AluY SINE Alu 69 306 -5 1696 229 71 34 chr1 218277031 218277554 -63916110 + MER67A LTR ERV1 2 543 0 206 61 0 30 chr1 218279021 218279054 -63914610 + (CA)n Simple_repeat Simple_repeat 1 32 0 1169 248 71 28 chr1 218279075 218279568 -63914096 - L1M4 LINE L1 -3113 3033 2520 2138 128 0 0 chr1 218279600 218279912 -63913752 + AluSx SINE Alu 1 312 0 274 252 100 135 chr1 218279917 218280102 -63913562 + MLT1C LTR MaLR 21 174 -293 1959 124 0 6 chr1 218280102 218280416 -63913248 + AluSq SINE Alu 1 312 -1 274 252 100 135 chr1 218280416 218280571 -63913093 + MLT1C LTR MaLR 174 333 -134 961 215 35 4 chr1 218280580 218280905 -63912759 - L1MC/D LINE L1 -743 5403 5186 22 0 0 0 chr1 218281527 218281549 -63912115 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr1 218282953 218282992 -63910672 + AT_rich Low_complexity Low_complexity 1 39 0 338 260 120 75 chr1 218283726 218283926 -63909738 + MIR SINE MIR 51 259 -3 456 190 0 91 chr1 218284242 218284342 -63909322 + MLT1A2 LTR MaLR 1 89 -285 236 91 0 0 chr1 218284342 218284375 -63909289 + MLT2B3 LTR ERVL 1 33 -521 * 693 223 23 0 chr1 218284374 218284504 -63909160 + MLT2B3 LTR ERVL 357 489 -65 1297 200 28 38 chr1 218284517 218284807 -63908857 + MLT1A2 LTR MaLR 88 374 0 430 329 116 57 chr1 218284989 218285921 -63907743 - L2 LINE L2 -5 3308 2298 1712 148 50 17 chr1 218286498 218286795 -63906869 - AluSx SINE Alu -5 307 1 1478 299 62 46 chr1 218287249 218287398 -63906266 + L1MDb LINE L1 198 343 -6200 1806 164 57 28 chr1 218287398 218287752 -63905912 - THE1B LTR MaLR 0 364 1 10736 104 21 15 chr1 218287752 218289323 -63904341 - THE1B-int LTR MaLR 0 1580 1 1655 158 79 53 chr1 218289323 218289678 -63903986 - THE1B LTR MaLR 0 364 1 1478 299 62 46 chr1 218289678 218290155 -63903509 + L1MDb LINE L1 342 785 -5758 3066 106 56 2 chr1 218290157 218290619 -63903045 - LTR15 LTR ERV1 -6 487 1 1985 251 44 63 chr1 218290623 218291309 -63902355 + L1MDb LINE L1 613 1285 -5258 551 225 63 9 chr1 218291335 218291493 -63902171 + L1MDb LINE L1 1822 1976 -4564 4950 190 45 44 chr1 218291499 218293192 -63900472 - L1PA16 LINE L1 0 7604 5910 2100 151 40 31 chr1 218293192 218293616 -63900048 + MSTA LTR MaLR 1 428 0 4950 190 45 44 chr1 218293616 218294304 -63899360 - L1PA16 LINE L1 -1694 5910 5225 2958 261 25 19 chr1 218294323 218295516 -63898148 - L1PA16 LINE L1 -4190 3394 2182 828 338 39 44 chr1 218296021 218296607 -63897057 - L1PA16 LINE L1 -6203 1371 789 620 295 97 4 chr1 218296607 218297284 -63896380 + L1MDb LINE L1 1969 2734 -3806 2944 217 60 27 chr1 218297284 218297956 -63895708 - MER44D DNA MER2_type 0 705 12 3013 273 50 25 chr1 218297957 218299447 -63894217 + L1MDb LINE L1 2727 4254 -2286 465 216 54 98 chr1 218299450 218299654 -63894010 - MLT1D LTR MaLR -294 211 17 432 270 40 0 chr1 218299703 218299851 -63893813 + L1MDb LINE L1 4275 4428 -2112 1271 284 59 57 chr1 218299938 218301065 -63892599 + L1MDb LINE L1 4420 5548 -992 192 40 0 0 chr1 218301070 218301095 -63892569 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 783 196 22 0 chr1 218301138 218301276 -63892388 + AluJo SINE Alu 3 143 -169 1956 134 32 91 chr1 218301281 218301752 -63891912 + L1MA2 LINE L1 5862 6304 0 21 0 0 0 chr1 218302218 218302239 -63891425 + AT_rich Low_complexity Low_complexity 1 21 0 202 146 0 24 chr1 218302943 218302984 -63890680 + (TAAAAA)n Simple_repeat Simple_repeat 4 43 0 2109 109 0 0 chr1 218304186 218304505 -63889159 - AluSx SINE Alu 0 319 1 1337 248 100 18 chr1 218304609 218305049 -63888615 + MER90 LTR ERV1 1 476 -99 204 239 0 15 chr1 218306107 218306174 -63887490 + A-rich Low_complexity Low_complexity 3 68 0 26 0 0 0 chr1 218307636 218307662 -63886002 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr1 218307961 218307989 -63885675 + AT_rich Low_complexity Low_complexity 1 28 0 538 314 101 11 chr1 218308318 218308506 -63885158 - MER63A DNA MER1_type 0 210 6 752 328 65 30 chr1 218308517 218309169 -63884495 + ERVL LTR ERVL 4278 5011 -516 182 333 0 0 chr1 218309304 218309361 -63884303 - MIR SINE MIR -131 131 75 284 280 116 34 chr1 218310734 218310941 -63882723 - MIR SINE MIR -2 260 37 511 125 0 0 chr1 218311919 218311999 -63881665 + L1PA7 LINE L1 6072 6151 -3 1194 244 67 51 chr1 218312194 218312625 -63881039 + MLT1D LTR MaLR 60 497 -8 828 212 31 44 chr1 218313343 218313692 -63879972 - MLT1D LTR MaLR -106 399 7 212 323 104 21 chr1 218313742 218313838 -63879826 + L2 LINE L2 3210 3313 0 1100 211 4 4 chr1 218314021 218314249 -63879415 - AluJo SINE Alu -7 305 78 25 31 0 0 chr1 218315679 218315711 -63877953 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 218315967 218315990 -63877674 + AT_rich Low_complexity Low_complexity 1 23 0 1277 219 89 9 chr1 218316093 218316431 -63877233 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr1 218317143 218317164 -63876500 + AT_rich Low_complexity Low_complexity 1 21 0 55 62 0 0 chr1 218317600 218317697 -63875967 + AT_rich Low_complexity Low_complexity 1 97 0 592 360 126 36 chr1 218317806 218318158 -63875506 + L2 LINE L2 954 1273 -2041 2575 95 5 0 chr1 218318158 218318527 -63875137 - L1PA13 LINE L1 -4 6159 5789 592 360 126 36 chr1 218318527 218318849 -63874815 + L2 LINE L2 1273 1689 -1625 863 291 210 28 chr1 218318854 218319534 -63874130 + L2 LINE L2 1869 2672 -642 28 29 0 0 chr1 218319541 218319576 -63874088 + AT_rich Low_complexity Low_complexity 1 35 0 231 311 106 0 chr1 218320414 218320546 -63873118 + MIR SINE MIR 115 260 -2 967 303 96 57 chr1 218321213 218321860 -63871804 - L1ME3A LINE L1 -6 6164 5493 1451 228 14 35 chr1 218321865 218321940 -63871724 + MLT1A1 LTR MaLR 1 76 -289 906 78 78 0 chr1 218321940 218322069 -63871595 - MER85 DNA T2_type 0 139 1 1451 228 14 35 chr1 218322069 218322339 -63871325 + MLT1A1 LTR MaLR 76 339 -26 26 50 0 0 chr1 218322341 218322381 -63871283 + AT_rich Low_complexity Low_complexity 1 40 0 459 206 83 64 chr1 218322399 218322642 -63871022 - L1ME3A LINE L1 -678 5500 5254 225 224 0 0 chr1 218322652 218322719 -63870945 + L1MC4 LINE L1 6637 6703 -1339 * 269 316 25 49 chr1 218322712 218322956 -63870708 - L1ME3A LINE L1 -901 5245 5008 22 80 0 0 chr1 218322978 218323028 -63870636 + AT_rich Low_complexity Low_complexity 1 50 0 333 243 70 43 chr1 218323188 218323373 -63870291 - L1ME3A LINE L1 -1318 4828 4639 23 54 0 0 chr1 218323398 218323435 -63870229 + AT_rich Low_complexity Low_complexity 1 37 0 6548 190 23 23 chr1 218323437 218325720 -63867944 - L1MA4 LINE L1 -1 6179 3871 495 220 27 4 chr1 218325710 218325955 -63867709 - L1MA4 LINE L1 -2875 3271 2922 * 22 88 0 0 chr1 218327038 218327095 -63866569 + AT_rich Low_complexity Low_complexity 1 57 0 294 240 227 0 chr1 218328945 218329020 -63864644 - Tigger7 DNA MER2_type 0 2487 2396 * 2395 209 59 2 chr1 218329019 218329512 -63864152 - Tigger7 DNA MER2_type -212 521 1 591 300 96 68 chr1 218330570 218331303 -63862361 + HAL1 LINE L1 290 1042 -1465 1197 191 30 30 chr1 218331354 218331657 -63862007 - L1MA7 LINE L1 -64 6227 5925 448 119 36 0 chr1 218331657 218331726 -63861938 + L1MA7 LINE L1 6202 6288 -3 480 311 83 14 chr1 218331801 218332078 -63861586 + HAL1 LINE L1 1487 1782 -725 266 191 0 15 chr1 218332733 218332801 -63860863 + CT-rich Low_complexity Low_complexity 3 69 0 354 325 46 52 chr1 218332984 218333310 -63860354 - L1ME LINE L1 -519 5651 5328 3269 195 21 20 chr1 218333494 218334127 -63859537 + MER67C LTR ERV1 1 637 -73 2012 137 3 0 chr1 218334127 218334426 -63859238 - AluSg SINE Alu -10 300 1 3269 195 21 20 chr1 218334426 218334501 -63859163 + MER67C LTR ERV1 637 710 0 1066 272 89 22 chr1 218334782 218334885 -63858779 - L1ME2 LINE L1 -14 6150 6055 606 241 25 76 chr1 218334885 218335121 -63858543 + MER58A DNA MER1_type 1 224 0 1066 272 89 22 chr1 218335121 218335656 -63858008 - L1ME2 LINE L1 -109 6055 5469 305 352 30 25 chr1 218335721 218335920 -63857744 - L1MDa LINE L1 -3892 2752 2553 507 308 161 45 chr1 218336127 218337228 -63856436 + L1MEc LINE L1 856 2084 -4312 1647 102 0 5 chr1 218338440 218338656 -63855008 - AluSg SINE Alu -94 216 2 30 0 0 0 chr1 218338797 218338827 -63854837 + AT_rich Low_complexity Low_complexity 1 30 0 243 231 104 37 chr1 218340149 218340283 -63853381 + L1M4 LINE L1 4477 4619 -1527 412 313 104 26 chr1 218341418 218341802 -63851862 + L1MEc LINE L1 18 431 -5965 349 365 60 58 chr1 218341880 218342315 -63851349 + L1MEc LINE L1 499 934 -5462 233 301 19 29 chr1 218342326 218342429 -63851235 + L1MEc LINE L1 1273 1374 -5022 1874 141 55 100 chr1 218343086 218343631 -63850033 - MLT2A2 LTR ERVL -10 544 1 429 296 154 22 chr1 218343777 218344022 -63849642 - HAL1 LINE L1 -1036 1471 1120 199 167 30 15 chr1 218344022 218344088 -63849576 + T-rich Low_complexity Low_complexity 1 67 0 508 193 19 19 chr1 218344910 218345071 -63848593 + CT-rich Low_complexity Low_complexity 1 161 0 211 331 70 49 chr1 218346936 218347078 -63846586 - MIR3 SINE MIR -42 166 22 1965 85 96 0 chr1 218347402 218347672 -63845992 + AluY SINE Alu 6 301 -10 180 77 0 0 chr1 218348131 218348157 -63845507 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 1620 181 49 22 chr1 218348159 218348524 -63845140 - THE1C LTR MaLR 0 375 1 323 231 13 7 chr1 218348617 218348778 -63844886 + CT-rich Low_complexity Low_complexity 1 162 0 3164 203 42 38 chr1 218348778 218349662 -63844002 - L1MCb LINE L1 -5017 1627 533 767 272 28 64 chr1 218349707 218350034 -63843630 - L1MCb LINE L1 -5897 645 331 2343 155 60 58 chr1 218350127 218350623 -63843041 + LOR1a LTR ERV1 1 497 0 21 71 0 0 chr1 218350858 218350900 -63842764 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr1 218351037 218351066 -63842598 + AT_rich Low_complexity Low_complexity 1 29 0 2258 78 0 3 chr1 218351774 218352082 -63841582 + AluY SINE Alu 1 307 0 3936 146 68 10 chr1 218354831 218355563 -63838101 - LTR1 LTR ERV1 0 785 11 1589 106 8 12 chr1 218356245 218356491 -63837173 - L1PA10 LINE L1 -3 6165 5921 7311 45 0 1 chr1 218356647 218358300 -63835364 + L1PA5 LINE L1 4518 6148 -6 459 281 63 12 chr1 218358867 218359120 -63834544 - L1M4 LINE L1 -2875 3271 3006 275 154 19 0 chr1 218359127 218359179 -63834485 + MLT1A1 LTR MaLR 1 53 -312 2701 244 31 19 chr1 218359353 218360136 -63833528 - L1MB8 LINE L1 -2 6176 5385 881 219 51 14 chr1 218360143 218360320 -63833344 - AluJo SINE Alu 0 312 124 221 0 0 33 chr1 218360320 218360350 -63833314 + (TTG)n Simple_repeat Simple_repeat 2 30 0 881 219 51 14 chr1 218360350 218360387 -63833277 - AluJo SINE Alu -188 124 90 389 196 49 10 chr1 218360398 218360500 -63833164 - L1MA9 LINE L1 -179 6133 6028 2112 181 38 26 chr1 218360515 218360792 -63832872 - L1MA4A LINE L1 -7 6882 6595 216 0 0 0 chr1 218360792 218360816 -63832848 + (CCA)n Simple_repeat Simple_repeat 1 24 0 2112 181 38 26 chr1 218360816 218361040 -63832624 - L1MA4A LINE L1 -294 6595 6375 322 178 58 23 chr1 218361049 218361223 -63832441 + (TA)n Simple_repeat Simple_repeat 1 180 0 339 247 16 48 chr1 218361242 218361428 -63832236 + (TA)n Simple_repeat Simple_repeat 1 180 0 485 214 0 0 chr1 218361442 218361540 -63832124 - L1MA4A LINE L1 -512 6377 6280 * 2892 204 25 108 chr1 218361538 218362339 -63831325 - L1MA4A LINE L1 -714 6040 5385 1994 139 41 25 chr1 218362339 218362706 -63830958 + THE1C LTR MaLR 1 373 -2 2892 204 25 108 chr1 218362706 218363189 -63830475 - L1MA4A LINE L1 -1369 5385 4863 1873 213 104 27 chr1 218363194 218363888 -63829776 - L1MA4A LINE L1 -2462 4270 3524 431 318 17 20 chr1 218363891 218364120 -63829544 - L1MA4A LINE L1 -5203 1450 592 2582 318 26 27 chr1 218364224 218365211 -63828453 - L1M4b LINE L1 -5828 1031 46 222 304 33 11 chr1 218365346 218365438 -63828226 + MIR SINE MIR 156 249 -13 28 61 0 0 chr1 218366115 218366164 -63827500 + AT_rich Low_complexity Low_complexity 1 49 0 2113 241 52 14 chr1 218366164 218366719 -63826945 + MER70B LTR ERVL 1 576 -2 1274 158 5 5 chr1 218366988 218367190 -63826474 - MER1B DNA MER1_type 0 339 138 530 84 0 0 chr1 218367190 218367261 -63826403 + Alu SINE Alu 227 297 -13 776 203 0 0 chr1 218367261 218367404 -63826260 - MER1B DNA MER1_type -151 146 4 23 54 0 0 chr1 218368519 218368556 -63825108 + AT_rich Low_complexity Low_complexity 1 37 0 3514 70 2 0 chr1 218368784 218369238 -63824426 + L1PA7 LINE L1 5524 5978 -194 28 71 0 0 chr1 218369505 218369561 -63824103 + AT_rich Low_complexity Low_complexity 1 56 0 551 141 66 8 chr1 218369568 218369689 -63823975 - L1MA8 LINE L1 -6 6285 6158 1280 92 0 0 chr1 218369922 218370096 -63823568 + L1PA7 LINE L1 5974 6147 -7 546 273 33 55 chr1 218370157 218370428 -63823236 + Zaphod DNA AcHobo 3767 4031 0 230 304 54 11 chr1 218370751 218370843 -63822821 - MIR SINE MIR -159 103 8 21 0 0 0 chr1 218371885 218371906 -63821758 + AT_rich Low_complexity Low_complexity 1 21 0 317 172 16 0 chr1 218372374 218372438 -63821226 + AluJb SINE Alu 58 122 -180 327 247 21 11 chr1 218372754 218372847 -63820817 + MER70B LTR ERVL 459 552 -26 308 327 62 31 chr1 218372849 218373011 -63820653 - L2 LINE L2 -1386 1928 1762 2108 117 3 0 chr1 218373446 218373755 -63819909 + AluSx SINE Alu 1 310 -2 2411 60 0 3 chr1 218373975 218374277 -63819387 + AluY SINE Alu 9 309 -2 395 304 54 14 chr1 218374308 218374456 -63819208 - L2 LINE L2 -942 2372 2219 2608 27 0 3 chr1 218374710 218375009 -63818655 - AluY SINE Alu -13 298 1 314 130 19 0 chr1 218375104 218375158 -63818506 + MADE1 DNA Mariner 5 59 -21 911 24 24 8 chr1 218375159 218375286 -63818378 + (TCTA)n Simple_repeat Simple_repeat 4 132 0 2903 6 0 0 chr1 218376416 218376734 -63816930 - AluYb8 SINE Alu 0 318 1 219 293 131 47 chr1 218378003 218378243 -63815421 + L2 LINE L2 2568 2899 -415 535 288 6 38 chr1 218378403 218378563 -63815101 + L2 LINE L2 3159 3313 0 219 173 0 0 chr1 218378843 218378895 -63814769 + CT-rich Low_complexity Low_complexity 2 53 0 627 282 109 58 chr1 218379215 218379563 -63814101 + MLT1F LTR MaLR 3 368 -174 34 42 0 0 chr1 218379823 218379871 -63813793 + AT_rich Low_complexity Low_complexity 1 48 0 1174 274 28 8 chr1 218379965 218380427 -63813237 - MER82 DNA MER2_type -11 642 96 1531 286 80 16 chr1 218381356 218381905 -63811759 + MLT1E LTR MaLR 1 584 -9 314 23 23 0 chr1 218382205 218382248 -63811416 + (TA)n Simple_repeat Simple_repeat 1 44 0 5501 38 0 0 chr1 218382248 218382900 -63810764 - L1PA5 LINE L1 -16 6138 5487 4352 49 11 0 chr1 218382900 218383548 -63810116 + L1PA5 LINE L1 4828 5479 -675 21 95 0 0 chr1 218383670 218383733 -63809931 + AT_rich Low_complexity Low_complexity 1 63 0 353 332 95 17 chr1 218384064 218384305 -63809359 + MIR SINE MIR 3 262 0 1709 141 11 0 chr1 218384447 218384710 -63808954 + AluSx SINE Alu 38 303 -9 21 0 0 0 chr1 218385479 218385500 -63808164 + AT_rich Low_complexity Low_complexity 1 21 0 339 85 0 0 chr1 218385711 218385758 -63807906 + (CA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr1 218386401 218386426 -63807238 + AT_rich Low_complexity Low_complexity 1 25 0 236 263 25 0 chr1 218387030 218387110 -63806554 - L1M4c LINE L1 -4859 1525 1444 1045 165 0 18 chr1 218387372 218387542 -63806122 - AluJ SINE Alu -16 296 130 216 102 41 41 chr1 218387547 218387596 -63806068 + CT-rich Low_complexity Low_complexity 1 49 0 1910 180 0 0 chr1 218387596 218387907 -63805757 - AluSx SINE Alu -1 311 1 682 213 0 22 chr1 218387922 218388058 -63805606 - AluJ SINE Alu -169 133 1 7359 36 0 0 chr1 218388247 218389221 -63804443 - L1PA4 LINE L1 -8 6147 5172 38 81 0 0 chr1 218389226 218389313 -63804351 + AT_rich Low_complexity Low_complexity 1 87 0 327 296 172 47 chr1 218390386 218390424 -63803240 - LTR50 LTR ERVL -323 472 440 4796 101 79 38 chr1 218390424 218391217 -63802447 + LTR12 LTR ERV1 1 826 0 327 296 172 47 chr1 218391217 218391580 -63802084 - LTR50 LTR ERVL -355 440 21 25 0 0 0 chr1 218391988 218392013 -63801651 + AT_rich Low_complexity Low_complexity 1 25 0 246 279 16 0 chr1 218392446 218392507 -63801157 + MIR SINE MIR 195 256 -6 23 0 0 0 chr1 218393275 218393298 -63800366 + AT_rich Low_complexity Low_complexity 1 23 0 327 227 0 40 chr1 218393319 218393394 -63800270 - MER58 DNA MER1_type -9 2411 2340 25 75 0 0 chr1 218393467 218393520 -63800144 + AT_rich Low_complexity Low_complexity 1 53 0 6362 206 45 23 chr1 218393624 218394080 -63799584 - L1MA8 LINE L1 -6 7306 6862 354 23 0 0 chr1 218394080 218394123 -63799541 + (TG)n Simple_repeat Simple_repeat 2 44 0 6362 206 45 23 chr1 218394123 218394136 -63799528 - L1MA8 LINE L1 -450 6862 6851 401 0 20 0 chr1 218394136 218394185 -63799479 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 6362 206 45 23 chr1 218394185 218395165 -63798499 - L1MA8 LINE L1 -461 6851 5894 315 0 0 0 chr1 218395165 218395200 -63798464 + (TG)n Simple_repeat Simple_repeat 2 36 0 6362 206 45 23 chr1 218395200 218395745 -63797919 - L1MA8 LINE L1 -1418 5894 5363 216 0 0 0 chr1 218395745 218395769 -63797895 + (TA)n Simple_repeat Simple_repeat 2 25 0 6362 206 45 23 chr1 218395769 218396227 -63797437 - L1MA8 LINE L1 -1949 5363 4781 4336 251 50 40 chr1 218396237 218398790 -63794874 - L1MA8 LINE L1 -2680 4487 1961 2013 127 3 0 chr1 218398790 218399082 -63794582 + AluSp SINE Alu 1 293 -20 4336 251 50 40 chr1 218399082 218399204 -63794460 - L1MA8 LINE L1 -5206 1961 1842 2852 198 53 47 chr1 218399204 218399901 -63793763 - MER44D DNA MER2_type -3 702 2 4336 251 50 40 chr1 218399901 218400444 -63793220 - L1MA8 LINE L1 -5325 1842 1534 195 42 0 0 chr1 218401202 218401226 -63792438 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 306 0 0 0 chr1 218401225 218401259 -63792405 + (TG)n Simple_repeat Simple_repeat 1 34 0 45 69 0 0 chr1 218401305 218401392 -63792272 + AT_rich Low_complexity Low_complexity 1 87 0 560 14 14 0 chr1 218401907 218401976 -63791688 + (GAAA)n Simple_repeat Simple_repeat 1 70 0 454 315 29 21 chr1 218402577 218402818 -63790846 - L1MC4 LINE L1 -1341 6701 6459 2427 220 18 18 chr1 218403705 218404206 -63789458 + MLT2B1 LTR ERVL 1 501 -19 316 89 71 36 chr1 218404239 218404295 -63789369 + MLT2B1 LTR ERVL 463 520 0 186 405 35 9 chr1 218404709 218404825 -63788839 + L2 LINE L2 2934 3052 -220 189 107 0 0 chr1 218405305 218405333 -63788331 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 304 298 50 8 chr1 218405373 218405494 -63788170 - MIR SINE MIR -55 207 82 180 111 0 0 chr1 218405598 218405625 -63788039 + (TTA)n Simple_repeat Simple_repeat 2 28 0 421 176 33 0 chr1 218405697 218405788 -63787876 + MER53 DNA DNA 96 189 0 379 301 8 8 chr1 218405937 218406070 -63787594 + GA-rich Low_complexity Low_complexity 2 134 0 681 252 7 0 chr1 218406093 218406244 -63787420 + FRAM SINE Alu 1 152 -14 25 51 0 0 chr1 218406776 218406815 -63786849 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 218406821 218406849 -63786815 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr1 218407255 218407292 -63786372 + AT_rich Low_complexity Low_complexity 1 37 0 189 74 0 0 chr1 218409493 218409520 -63784144 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 * 314 23 23 0 chr1 218409519 218409562 -63784102 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 48 0 0 chr1 218409577 218409619 -63784045 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr1 218409917 218409949 -63783715 + AT_rich Low_complexity Low_complexity 1 32 0 31 44 0 0 chr1 218410009 218410054 -63783610 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 218411224 218411257 -63782407 + AT_rich Low_complexity Low_complexity 1 33 0 844 166 0 7 chr1 218411363 218411502 -63782162 + AluJo SINE Alu 1 138 -174 679 182 0 38 chr1 218411503 218411635 -63782029 - Tigger2 DNA MER2_type -671 2047 1921 3159 183 75 24 chr1 218411637 218412368 -63781296 + LTR1B LTR ERV1 1 785 0 4011 162 18 36 chr1 218412373 218413144 -63780520 - Tigger2 DNA MER2_type -801 1917 1161 2364 194 0 16 chr1 218413135 218413567 -63780097 - MER66B LTR ERV1 -55 431 7 * 449 267 0 0 chr1 218413594 218413699 -63779965 - L1ME LINE L1 -467 5699 5595 934 19 0 0 chr1 218413699 218413807 -63779857 - L1PA5 LINE L1 -3 6151 6044 305 113 19 19 chr1 218413810 218413863 -63779801 + MER66A LTR ERV1 426 478 0 1134 225 10 13 chr1 218413865 218414167 -63779497 + L1ME1 LINE L1 5700 6000 -166 645 217 7 7 chr1 218414196 218414348 -63779316 + L1MA10 LINE L1 6181 6332 -2 194 309 15 15 chr1 218414480 218414548 -63779116 - MER5A DNA MER1_type 0 189 122 332 179 147 0 chr1 218414570 218414665 -63778999 + MER63 DNA MER1_type 84 192 -738 5758 181 53 5 chr1 218414694 218415808 -63777856 - Tigger2 DNA MER2_type -1540 1178 11 1058 264 55 16 chr1 218415931 218416295 -63777369 + L1M4 LINE L1 4738 5115 -1031 1292 262 95 50 chr1 218416617 218417143 -63776521 + MLT1F1 LTR MaLR 1 549 -18 243 0 0 0 chr1 218417144 218417171 -63776493 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 261 0 0 0 chr1 218417170 218417199 -63776465 + (GA)n Simple_repeat Simple_repeat 2 30 0 273 222 0 0 chr1 218417308 218417371 -63776293 + (TA)n Simple_repeat Simple_repeat 1 63 0 239 146 18 0 chr1 218417422 218417477 -63776187 + GA-rich Low_complexity Low_complexity 2 57 0 44 20 0 0 chr1 218417955 218418006 -63775658 + AT_rich Low_complexity Low_complexity 1 51 0 36 23 0 0 chr1 218419127 218419170 -63774494 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr1 218419919 218419957 -63773707 + AT_rich Low_complexity Low_complexity 1 38 0 2805 269 121 51 chr1 218420020 218421002 -63772662 + L1M3c LINE L1 1 913 -5299 1700 79 24 12 chr1 218421002 218421255 -63772409 + L1PA13 LINE L1 5905 6160 -3 2805 269 121 51 chr1 218421255 218422673 -63770991 + L1M3c LINE L1 913 2177 -4035 6296 243 44 26 chr1 218422778 218423002 -63770662 + L1M3c LINE L1 2329 2548 -3662 1821 148 7 7 chr1 218423002 218423312 -63770352 + AluSx SINE Alu 1 310 0 6296 243 44 26 chr1 218423312 218423824 -63769840 + L1M3c LINE L1 2548 3049 -3161 2064 111 20 3 chr1 218423824 218424121 -63769543 - AluY SINE Alu -9 302 1 6296 243 44 26 chr1 218424121 218425556 -63768108 + L1M3c LINE L1 3049 4541 -1669 967 136 0 7 chr1 218425556 218425703 -63767961 + MSTA LTR MaLR 277 422 -6 264 218 0 0 chr1 218425704 218425759 -63767905 - L1MB1 LINE L1 -90 6078 6024 275 209 0 0 chr1 218425790 218425833 -63767831 - AluJ/monomer SINE Alu -256 43 1 449 246 25 0 chr1 218425840 218425958 -63767706 - L1 LINE L1 -821 5325 5205 405 165 22 22 chr1 218425953 218426044 -63767620 - L1 LINE L1 -1579 4567 4477 * 1231 209 7 56 chr1 218426047 218426178 -63767486 - MSTB LTR MaLR -153 273 137 2284 86 3 10 chr1 218426178 218426479 -63767185 + AluY SINE Alu 1 299 -12 1231 209 7 56 chr1 218426479 218426634 -63767030 - MSTB LTR MaLR -289 137 1 720 212 42 62 chr1 218426634 218426893 -63766771 + L1MA10 LINE L1 6081 6334 0 321 26 0 0 chr1 218427045 218427083 -63766581 + (CA)n Simple_repeat Simple_repeat 2 39 0 6862 128 106 99 chr1 218427388 218429093 -63764571 - pTR5 LTR ERV1 0 2438 375 724 293 45 29 chr1 218430153 218430864 -63762800 + L1ME2 LINE L1 5273 6082 -88 240 86 0 0 chr1 218430864 218430899 -63762765 + (TG)n Simple_repeat Simple_repeat 2 36 0 724 293 45 29 chr1 218430899 218430970 -63762694 + L1ME2 LINE L1 6082 6150 -20 225 170 0 0 chr1 218431028 218431075 -63762589 - L1MC4 LINE L1 -1344 6698 6652 695 221 202 19 chr1 218431249 218431516 -63762148 + MLT1A1 LTR MaLR 50 365 0 1654 260 108 28 chr1 218431523 218432461 -63761203 - L1MEc LINE L1 -3151 3064 2094 338 282 79 35 chr1 218432484 218432800 -63760864 - L1MEc LINE L1 -4413 1983 1654 515 299 57 73 chr1 218432808 218433230 -63760434 - L1MEc LINE L1 -4888 1508 1094 26 0 0 0 chr1 218433440 218433466 -63760198 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 218433684 218433707 -63759957 + AT_rich Low_complexity Low_complexity 1 23 0 246 269 0 75 chr1 218433835 218433874 -63759790 - MIR SINE MIR -111 151 111 2293 113 37 6 chr1 218433874 218434227 -63759437 - THE1B LTR MaLR 0 364 1 246 269 0 75 chr1 218434227 218434280 -63759384 - MIR SINE MIR -151 111 66 2815 132 11 7 chr1 218434949 218435405 -63758259 - L1PA13 LINE L1 -307 5861 5404 1752 141 20 13 chr1 218435405 218435703 -63757961 + L1PA13 LINE L1 5859 6159 -4 21 57 0 0 chr1 218437768 218437803 -63755861 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 218438415 218438459 -63755205 + AT_rich Low_complexity Low_complexity 1 44 0 687 268 0 12 chr1 218438637 218438805 -63754859 - MER5B DNA MER1_type -6 172 7 251 297 71 10 chr1 218438815 218439111 -63754553 - L1MEd LINE L1 -2920 3209 2896 27 49 0 0 chr1 218439399 218439440 -63754224 + AT_rich Low_complexity Low_complexity 1 41 0 317 298 29 10 chr1 218439971 218440075 -63753589 - L1MEd LINE L1 -5011 1108 1003 287 338 102 38 chr1 218441282 218441705 -63751959 + ERVL LTR ERVL 3758 4207 -1557 2329 69 0 20 chr1 218442059 218442363 -63751301 - AluY SINE Alu -13 298 1 246 273 0 0 chr1 218443022 218443077 -63750587 + MER69 DNA AcHobo 1 55 -2471 1869 242 69 23 chr1 218443102 218443622 -63750042 + MER77 LTR ERV1 54 597 -8 426 286 43 0 chr1 218443727 218443867 -63749797 + MER69 DNA AcHobo 51 196 -1030 222 62 0 0 chr1 218443949 218443981 -63749683 + (CA)n Simple_repeat Simple_repeat 2 33 0 321 26 0 0 chr1 218444227 218444265 -63749399 + (TA)n Simple_repeat Simple_repeat 2 39 0 564 300 96 24 chr1 218444304 218444423 -63749241 + MER69 DNA AcHobo 460 569 -1957 2124 127 0 0 chr1 218444423 218444722 -63748942 - AluSg SINE Alu -11 299 1 564 300 96 24 chr1 218444722 218444895 -63748769 + MER69 DNA AcHobo 569 773 -1753 546 278 117 14 chr1 218444941 218445384 -63748280 + MER69 DNA AcHobo 2031 2519 -7 190 237 0 0 chr1 218445575 218445613 -63748051 + L2 LINE L2 3268 3305 -8 345 361 71 6 chr1 218445752 218445921 -63747743 + MIR SINE MIR 26 205 -57 36 77 0 0 chr1 218447403 218447481 -63746183 + AT_rich Low_complexity Low_complexity 1 78 0 1076 284 42 3 chr1 218447749 218448059 -63745605 - MER90 LTR ERV1 0 614 293 186 43 0 0 chr1 218448060 218448083 -63745581 + (CAATA)n Simple_repeat Simple_repeat 3 25 0 43 56 0 0 chr1 218448266 218448337 -63745327 + AT_rich Low_complexity Low_complexity 1 71 0 2333 220 26 52 chr1 218448774 218449144 -63744520 + MER67C LTR ERV1 4 347 -363 1573 141 18 81 chr1 218449144 218449477 -63744187 - AluJb SINE Alu 0 312 1 2333 220 26 52 chr1 218449477 218449830 -63743834 + MER67C LTR ERV1 347 708 -2 326 257 19 48 chr1 218451032 218451137 -63742527 - L1M4 LINE L1 -5125 1730 1629 514 309 68 17 chr1 218451142 218451378 -63742286 - L1M4 LINE L1 -6278 581 334 262 271 43 14 chr1 218451415 218451485 -63742179 - L1M4 LINE L1 -6777 82 11 354 253 24 48 chr1 218451953 218452086 -63741578 - L1 LINE L1 -2530 3616 3487 272 160 287 0 chr1 218452152 218452246 -63741418 - L1MA8 LINE L1 -1 6290 6170 241 279 133 40 chr1 218452243 218452695 -63740969 - L1 LINE L1 -2699 3447 2954 * 420 313 129 39 chr1 218453145 218453378 -63740286 - Zaphod DNA AcHobo -3698 333 80 269 273 39 0 chr1 218453405 218453482 -63740182 + MIR SINE MIR 109 188 -74 652 305 12 0 chr1 218453661 218453825 -63739839 + MER58A DNA MER1_type 7 172 -52 186 118 0 0 chr1 218453862 218453896 -63739768 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 71 0 0 chr1 218454159 218454201 -63739463 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 218454314 218454339 -63739325 + AT_rich Low_complexity Low_complexity 1 25 0 4136 186 20 35 chr1 218456248 218457212 -63736452 - L1PB4 LINE L1 -18 6138 5179 2605 248 65 3 chr1 218457208 218458070 -63735594 + L1PA15-16 LINE L1 1915 2839 -4010 * 209 95 71 0 chr1 218458419 218458461 -63735203 + T-rich Low_complexity Low_complexity 2 46 0 277 337 84 71 chr1 218458573 218459012 -63734652 + L2 LINE L2 2330 2774 -540 281 205 0 13 chr1 218459444 218459522 -63734142 + (TG)n Simple_repeat Simple_repeat 2 78 0 21 0 0 0 chr1 218459856 218459877 -63733787 + AT_rich Low_complexity Low_complexity 1 21 0 330 261 103 22 chr1 218460308 218460492 -63733172 + L1MB8 LINE L1 5734 5932 -246 31 26 0 0 chr1 218461302 218461340 -63732324 + AT_rich Low_complexity Low_complexity 1 38 0 509 271 183 8 chr1 218461697 218461948 -63731716 + L1M4 LINE L1 3654 3948 -2198 10233 223 28 26 chr1 218462028 218462345 -63731319 - L1PA16 LINE L1 -25 6844 6529 2117 62 59 3 chr1 218462345 218462635 -63731029 - AluY SINE Alu -5 306 1 10233 223 28 26 chr1 218462635 218466237 -63727427 - L1PA16 LINE L1 -340 6529 2901 2146 119 3 0 chr1 218466237 218466549 -63727115 - AluSq SINE Alu 0 313 1 10233 223 28 26 chr1 218466549 218466771 -63726893 - L1PA16 LINE L1 -3968 2901 2681 1176 183 25 21 chr1 218466772 218467012 -63726652 - AluJb SINE Alu 0 312 72 22 0 0 0 chr1 218467525 218467547 -63726117 + AT_rich Low_complexity Low_complexity 1 22 0 944 338 123 26 chr1 218467812 218468573 -63725091 - L2 LINE L2 -461 2853 2019 3460 197 65 4 chr1 218468660 218469396 -63724268 - L1MB3 LINE L1 -8 6175 5395 * 4163 248 58 19 chr1 218469395 218469650 -63724014 + L1M4 LINE L1 3851 4095 -2051 1512 143 43 108 chr1 218469650 218469995 -63723669 + THE1C LTR MaLR 4 322 -53 2110 105 0 3 chr1 218469995 218470312 -63723352 + AluSg SINE Alu 1 316 0 1512 143 43 108 chr1 218470312 218470363 -63723301 + THE1C LTR MaLR 322 375 0 4163 248 58 19 chr1 218470363 218471603 -63722061 + L1M4 LINE L1 4095 5403 -743 7984 110 2 4 chr1 218521816 218522930 -63670734 + HERVL-A2 LTR ERVL 4543 5654 0 1766 146 3 32 chr1 218522930 218523057 -63670607 + MLT2A2 LTR ERVL 1 130 -323 1842 148 81 26 chr1 218523057 218523402 -63670262 - THE1B LTR MaLR 0 364 1 1766 146 3 32 chr1 218523402 218523583 -63670081 + MLT2A2 LTR ERVL 130 300 -153 5489 56 4 0 chr1 218523584 218524275 -63669389 - L1P LINE L1 -1554 4592 3899 294 29 0 0 chr1 218524481 218524516 -63669148 + (TG)n Simple_repeat Simple_repeat 2 36 0 1512 283 29 52 chr1 218524989 218525605 -63668059 + L1ME LINE L1 53 654 -5742 817 242 41 3 chr1 218525611 218525922 -63667742 + L1ME LINE L1 5254 5574 -661 494 229 19 1 chr1 218527028 218527150 -63666514 - L1MD2 LINE L1 -4 8038 6241 720 208 29 16 chr1 218527364 218527602 -63666062 + L1MA8 LINE L1 5556 5793 -376 2209 191 30 30 chr1 218527635 218528142 -63665522 + L1MA8 LINE L1 5783 6289 -2 264 300 85 27 chr1 218528972 218529198 -63664466 + MLT1L LTR MaLR 228 543 -72 240 380 44 0 chr1 218530022 218530135 -63663529 + L2 LINE L2 3155 3272 0 30 45 0 0 chr1 218530239 218530283 -63663381 + AT_rich Low_complexity Low_complexity 1 44 0 29 28 0 0 chr1 218531026 218531062 -63662602 + AT_rich Low_complexity Low_complexity 1 36 0 347 237 119 37 chr1 218531144 218531354 -63662310 - L1ME3 LINE L1 -271 5899 5676 618 276 0 70 chr1 218531369 218531583 -63662081 + MER20 DNA MER1_type 1 199 -20 653 302 47 10 chr1 218531636 218531958 -63661706 - L1ME3 LINE L1 -605 5557 5260 183 42 0 0 chr1 218532054 218532078 -63661586 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1038 316 47 31 chr1 218532641 218533150 -63660514 + L2 LINE L2 2394 2910 -404 246 283 6 98 chr1 218533157 218533330 -63660334 + L2 LINE L2 3142 3298 -15 313 325 45 73 chr1 218533469 218533715 -63659949 - MLT1I LTR MaLR -24 385 147 24 0 0 0 chr1 218534035 218534059 -63659605 + AT_rich Low_complexity Low_complexity 1 24 0 385 236 49 83 chr1 218536127 218536271 -63657393 + MLT1H LTR MaLR 392 530 -19 28 61 0 0 chr1 218536791 218536840 -63656824 + AT_rich Low_complexity Low_complexity 1 49 0 368 298 99 27 chr1 218537732 218537994 -63655670 + L1M4 LINE L1 2251 2531 -3615 283 319 65 5 chr1 218538091 218538276 -63655388 + L1M4 LINE L1 4025 4220 -1926 346 322 69 41 chr1 218538422 218538739 -63654925 - L1MEc LINE L1 -5118 1278 953 1442 132 132 34 chr1 218538754 218539079 -63654585 - L1MA5 LINE L1 -5 6295 5939 700 236 85 10 chr1 218539272 218539471 -63654193 - MER20 DNA MER1_type -5 214 1 189 107 0 0 chr1 218539859 218539887 -63653777 + (T)n Simple_repeat Simple_repeat 1 28 0 686 243 76 16 chr1 218539887 218540072 -63653592 - MLT1C LTR MaLR -46 421 226 279 0 0 0 chr1 218540074 218540105 -63653559 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5006 68 1 6 chr1 218540109 218540761 -63652903 - L1PA5 LINE L1 -8 6146 5498 385 290 48 0 chr1 218540809 218540933 -63652731 - L1MEc LINE L1 -6135 261 132 2104 74 3 54 chr1 218541291 218541620 -63652044 - AluY SINE Alu 0 314 1 548 327 83 77 chr1 218542833 218542941 -63650723 - L2 LINE L2 -348 2966 2860 2087 132 3 0 chr1 218542941 218543251 -63650413 + AluY SINE Alu 1 311 0 548 327 83 77 chr1 218543251 218543815 -63649849 - L2 LINE L2 -454 2860 2290 222 194 0 0 chr1 218543963 218543999 -63649665 + (TG)n Simple_repeat Simple_repeat 1 36 0 27 49 0 0 chr1 218543999 218544040 -63649624 + AT_rich Low_complexity Low_complexity 1 41 0 1537 189 7 21 chr1 218544136 218544421 -63649243 - AluJb SINE Alu -31 281 1 21 71 0 0 chr1 218544577 218544619 -63649045 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr1 218544807 218544851 -63648813 + AT_rich Low_complexity Low_complexity 1 44 0 720 274 51 15 chr1 218545755 218545952 -63647712 + MER58A DNA MER1_type 21 224 0 344 306 54 41 chr1 218546958 218547105 -63646559 - LTR33 LTR ERVL -235 286 138 1916 201 31 63 chr1 218547226 218547748 -63645916 - MLT1D LTR MaLR 0 505 1 229 294 15 0 chr1 218547913 218547981 -63645683 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 216 219 0 0 chr1 218548010 218548051 -63645613 + (TAA)n Simple_repeat Simple_repeat 3 43 0 21 36 0 0 chr1 218548198 218548226 -63645438 + AT_rich Low_complexity Low_complexity 1 28 0 1426 223 35 13 chr1 218548518 218548891 -63644773 - MER67C LTR ERV1 0 710 330 403 262 0 21 chr1 218548927 218549068 -63644596 - MER67C LTR ERV1 -539 171 34 577 284 89 58 chr1 218549181 218549575 -63644089 + MLT1I LTR MaLR 4 409 0 2167 268 29 58 chr1 218551166 218552184 -63641480 + L1MC/D LINE L1 4236 5223 -923 22 0 0 0 chr1 218553364 218553386 -63640278 + AT_rich Low_complexity Low_complexity 1 22 0 225 65 0 0 chr1 218554034 218554065 -63639599 + (TG)n Simple_repeat Simple_repeat 2 32 0 235 217 44 0 chr1 218554345 218554429 -63639235 - MIR SINE MIR -81 127 39 10087 42 0 0 chr1 218555144 218556766 -63636898 - L1P2 LINE L1 -365 5790 4169 9000 42 2 0 chr1 218556765 218557895 -63635769 + L1P2 LINE L1 3044 4175 -1971 * 423 360 56 29 chr1 218557971 218558277 -63635387 - LTR16A1 LTR ERVL 0 457 144 571 26 26 0 chr1 218558689 218558766 -63634898 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 905 312 136 31 chr1 218558798 218559343 -63634321 - MLT2F LTR ERVL -60 603 2 34 42 0 0 chr1 218560150 218560198 -63633466 + AT_rich Low_complexity Low_complexity 1 48 0 27 49 0 0 chr1 218560688 218560729 -63632935 + AT_rich Low_complexity Low_complexity 1 41 0 421 245 0 49 chr1 218560912 218561014 -63632650 + Tigger3b DNA MER2_type 6 102 -1129 * 4690 137 92 6 chr1 218561005 218561893 -63631771 + Tigger3b DNA MER2_type 266 1230 -1 23 54 0 0 chr1 218563085 218563122 -63630542 + AT_rich Low_complexity Low_complexity 1 37 0 344 328 53 48 chr1 218563833 218564245 -63629419 + L1MC/D LINE L1 5327 5740 -2068 1780 144 55 25 chr1 218564579 218564940 -63628724 - L1MA9 LINE L1 -31 6281 5910 484 298 190 31 chr1 218565011 218565427 -63628237 - L1ME4a LINE L1 -251 5870 5389 210 154 0 0 chr1 218565452 218565491 -63628173 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 503 301 127 55 chr1 218565697 218566076 -63627588 - L2 LINE L2 0 3313 2908 3911 168 30 10 chr1 218566121 218566816 -63626848 - MER50 LTR ERV1 -23 711 3 500 284 221 7 chr1 218566823 218567094 -63626570 - L2 LINE L2 -498 2816 2488 436 249 10 85 chr1 218567148 218567349 -63626315 + LTR41 LTR ERVL 1 186 -587 1212 275 94 28 chr1 218567936 218568571 -63625093 - LTR51 LTR ERV1 -10 825 214 1199 362 106 60 chr1 218568834 218570080 -63623584 - L2 LINE L2 -1909 1405 103 770 237 22 58 chr1 218570083 218570357 -63623307 - L1 LINE L1 -2422 3724 3461 21 57 0 0 chr1 218570357 218570392 -63623272 + AT_rich Low_complexity Low_complexity 1 35 0 1257 210 122 26 chr1 218570448 218571007 -63622657 + L1MA10 LINE L1 5182 5822 -469 2385 85 0 0 chr1 218571014 218571308 -63622356 + AluSc SINE Alu 1 294 -15 237 178 0 0 chr1 218571309 218571354 -63622310 + CT-rich Low_complexity Low_complexity 2 46 0 7931 66 7 214 chr1 218571354 218573092 -63620572 + SVA Other Other 1 1378 -8 639 218 18 24 chr1 218573093 218573258 -63620406 + MLT1A2 LTR MaLR 161 324 -50 2012 201 48 2 chr1 218573289 218573731 -63619933 + L1MA10 LINE L1 5871 6332 -2 223 234 52 39 chr1 218573807 218573884 -63619780 + MIR SINE MIR 168 245 -17 22 70 0 0 chr1 218574826 218574869 -63618795 + AT_rich Low_complexity Low_complexity 1 43 0 2220 88 10 16 chr1 218575002 218575308 -63618356 - AluY SINE Alu -7 304 1 1448 183 27 91 chr1 218575470 218575602 -63618062 + MER7A DNA MER2_type 1 140 -2898 2170 124 0 9 chr1 218575602 218575917 -63617747 - AluSx SINE Alu 0 312 1 1448 183 27 91 chr1 218575917 218576156 -63617508 + MER7A DNA MER2_type 140 346 0 402 306 92 12 chr1 218576658 218576994 -63616670 - L1M4 LINE L1 -1696 4450 4088 339 230 0 0 chr1 218577681 218577768 -63615896 + (TA)n Simple_repeat Simple_repeat 2 88 0 10789 195 47 9 chr1 218577768 218583178 -63610486 - L1P5 LINE L1 -355 6512 636 902 212 5 0 chr1 218583184 218583377 -63610287 - L1P5 LINE L1 -6667 196 3 1368 251 81 73 chr1 218583475 218584436 -63609228 - L1M4 LINE L1 -2976 3170 2202 31 99 0 0 chr1 218584514 218584615 -63609049 + AT_rich Low_complexity Low_complexity 1 101 0 213 312 65 48 chr1 218585024 218585210 -63608454 - L2 LINE L2 -928 2386 2198 426 242 99 43 chr1 218585237 218585398 -63608266 - MER58C DNA MER1_type -10 205 36 658 352 84 9 chr1 218585432 218585753 -63607911 - L2 LINE L2 -1755 1559 1215 430 309 221 3 chr1 218585843 218586141 -63607523 - L2 LINE L2 -2422 892 530 4072 25 0 0 chr1 218586501 218586976 -63606688 - L1PA3 LINE L1 -3 6152 5678 207 69 0 0 chr1 218588137 218588166 -63605498 + (GA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1 218588375 218588396 -63605268 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 218588428 218588450 -63605214 + AT_rich Low_complexity Low_complexity 1 22 0 2293 51 10 0 chr1 218589122 218589418 -63604246 - L1PA4 LINE L1 0 6155 5857 1222 208 3 70 chr1 218589503 218589815 -63603849 + AluJo SINE Alu 2 292 -20 21 57 0 0 chr1 218590296 218590331 -63603333 + AT_rich Low_complexity Low_complexity 1 35 0 1216 249 9 6 chr1 218591412 218591761 -63601903 - L1P LINE L1 -2213 3933 3584 255 324 196 41 chr1 218592044 218592263 -63601401 + L2 LINE L2 2395 2647 -667 243 119 102 0 chr1 218592322 218592381 -63601283 + L1MA9 LINE L1 6248 6312 0 346 372 139 25 chr1 218592389 218592937 -63600727 + L2 LINE L2 2702 3313 0 21 71 0 0 chr1 218593128 218593170 -63600494 + AT_rich Low_complexity Low_complexity 1 42 0 541 343 82 4 chr1 218594732 218594965 -63598699 + MIR SINE MIR 12 262 0 268 337 12 0 chr1 218595405 218595491 -63598173 + MIR SINE MIR 66 152 -110 242 274 0 0 chr1 218595561 218595623 -63598041 + L1P4 LINE L1 5683 5744 -417 24 32 0 0 chr1 218595715 218595746 -63597918 + AT_rich Low_complexity Low_complexity 1 31 0 3989 203 56 24 chr1 218595887 218597447 -63596217 + MER52A LTR ERV1 1 1755 0 31 0 0 0 chr1 218597541 218597572 -63596092 + AT_rich Low_complexity Low_complexity 1 31 0 374 301 32 89 chr1 218597643 218597925 -63595739 + L1M4 LINE L1 4390 4655 -1491 803 262 83 8 chr1 218598077 218598346 -63595318 - MLT1F1 LTR MaLR 0 567 247 2012 147 41 19 chr1 218599054 218599421 -63594243 - THE1C LTR MaLR 0 375 1 2504 92 57 11 chr1 218599421 218599792 -63593872 - THE1C-int LTR MaLR 0 1580 1193 25 0 0 0 chr1 218600057 218600082 -63593582 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr1 218600145 218600174 -63593490 + AT_rich Low_complexity Low_complexity 1 29 0 704 231 0 0 chr1 218602087 218602247 -63591417 - L1PA15 LINE L1 0 6165 6006 222 91 0 0 chr1 218605291 218605324 -63588340 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 306 0 0 0 chr1 218605388 218605422 -63588242 + (CA)n Simple_repeat Simple_repeat 2 35 0 299 322 78 0 chr1 218605641 218605756 -63587908 + MIR SINE MIR 18 141 -121 771 181 96 11 chr1 218606528 218606705 -63586959 + LTR47A LTR ERVL 261 452 0 33 56 0 0 chr1 218606739 218606793 -63586871 + AT_rich Low_complexity Low_complexity 1 54 0 6399 73 3 0 chr1 218607103 218608580 -63585084 - L1PA7 LINE L1 0 6154 4720 2437 95 0 0 chr1 218608583 218608930 -63584734 + L1PA7 LINE L1 4364 4710 -1436 22 0 0 0 chr1 218610173 218610195 -63583469 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr1 218610868 218610893 -63582771 + AT_rich Low_complexity Low_complexity 1 25 0 330 332 143 3 chr1 218611262 218611605 -63582059 + L1M4 LINE L1 3564 3954 -2192 23 33 0 0 chr1 218611652 218611682 -63581982 + AT_rich Low_complexity Low_complexity 1 30 0 641 235 54 10 chr1 218612033 218612258 -63581406 - MER61D LTR ERV1 0 750 268 768 244 48 28 chr1 218612534 218612843 -63580821 - MER61D-int LTR ERV1 -5 8430 6839 11749 180 8 3 chr1 218613012 218613699 -63579965 - MER61D-int LTR ERV1 -1547 5544 4862 4289 82 147 70 chr1 218613699 218614466 -63579198 + LTR12 LTR ERV1 1 826 0 11749 180 8 3 chr1 218614466 218615710 -63577954 - MER61D-int LTR ERV1 -2229 4862 3603 4184 267 30 38 chr1 218615763 218616449 -63577215 - MER61D-int LTR ERV1 -1849 1551 861 1090 98 116 226 chr1 218616449 218616777 -63576887 - AluSp SINE Alu -11 292 1 4184 267 30 38 chr1 218616777 218617636 -63576028 - MER61D-int LTR ERV1 -2539 861 29 570 243 43 0 chr1 218617690 218617830 -63575834 - MER61D LTR ERV1 -18 483 338 1916 184 80 2 chr1 218618295 218618697 -63574967 + L1MA8 LINE L1 5444 5876 -415 899 340 117 15 chr1 218619047 218619639 -63574025 - L2 LINE L2 -1190 2124 1473 611 314 132 11 chr1 218619698 218620061 -63573603 - L2 LINE L2 -2389 925 519 184 385 0 0 chr1 218620070 218620148 -63573516 - L2 LINE L2 -2898 416 339 244 295 9 27 chr1 218620294 218620406 -63573258 + (CATATA)n Simple_repeat Simple_repeat 6 115 0 193 221 11 11 chr1 218621253 218621348 -63572316 + (TA)n Simple_repeat Simple_repeat 1 95 0 22 80 0 0 chr1 218621410 218621460 -63572204 + AT_rich Low_complexity Low_complexity 1 50 0 551 330 58 27 chr1 218621933 218622384 -63571280 - L1MC4 LINE L1 -481 7561 7097 22 0 0 0 chr1 218622522 218622544 -63571120 + AT_rich Low_complexity Low_complexity 1 22 0 227 255 82 31 chr1 218622803 218622901 -63570763 + MIR SINE MIR 74 176 -86 1175 271 70 63 chr1 218622992 218623624 -63570040 + L1ME3A LINE L1 5535 6170 0 22 80 0 0 chr1 218624280 218624330 -63569334 + AT_rich Low_complexity Low_complexity 1 50 0 22 80 0 0 chr1 218625110 218625160 -63568504 + AT_rich Low_complexity Low_complexity 1 50 0 317 111 0 0 chr1 218626513 218626558 -63567106 - AluSp/q SINE Alu -10 293 249 260 200 11 0 chr1 218627119 218627209 -63566455 + (TA)n Simple_repeat Simple_repeat 2 92 0 1600 154 52 4 chr1 218628580 218628847 -63564817 + AluSx SINE Alu 1 280 -32 239 0 0 31 chr1 218628848 218628880 -63564784 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 184 377 123 0 chr1 218628986 218629100 -63564564 + L2 LINE L2 3145 3272 0 23 0 0 0 chr1 218630259 218630282 -63563382 + AT_rich Low_complexity Low_complexity 1 23 0 204 356 89 11 chr1 218631085 218631175 -63562489 - L2 LINE L2 -25 3247 3151 208 298 0 0 chr1 218631635 218631682 -63561982 + (TG)n Simple_repeat Simple_repeat 1 47 0 209 191 0 0 chr1 218631723 218631765 -63561899 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 4758 255 63 48 chr1 218632157 218632525 -63561139 - L1MC3 LINE L1 -22 7763 7402 2350 169 21 7 chr1 218632525 218632951 -63560713 - MSTB1 LTR MaLR 0 432 1 4758 255 63 48 chr1 218632951 218633415 -63560249 - L1MC3 LINE L1 -383 7402 6947 1122 122 27 0 chr1 218633415 218633603 -63560061 - L1MA4 LINE L1 -4 6296 6104 4758 255 63 48 chr1 218633603 218635722 -63557942 - L1MC3 LINE L1 -838 6947 4764 977 306 122 21 chr1 218635814 218636248 -63557416 + L1M4 LINE L1 120 597 -6262 1973 252 22 41 chr1 218636257 218636987 -63556677 + L1M4 LINE L1 5031 5746 -1211 759 196 28 0 chr1 218636963 218637106 -63556558 + L1M4 LINE L1 6376 6522 -467 * 630 218 36 0 chr1 218637166 218637331 -63556333 - L1MC/D LINE L1 -855 5489 5319 1530 178 49 0 chr1 218637339 218637625 -63556039 - L1PA16 LINE L1 -9 6157 5858 365 281 49 43 chr1 218637742 218637906 -63555758 - MIR SINE MIR -27 235 71 21 0 0 0 chr1 218638106 218638127 -63555537 + AT_rich Low_complexity Low_complexity 1 21 0 273 261 118 93 chr1 218638521 218638765 -63554899 + MLT1I LTR MaLR 98 351 -58 1824 143 137 8 chr1 218638765 218639144 -63554520 - MSTA LTR MaLR 0 428 1 273 261 118 93 chr1 218639144 218639179 -63554485 + MLT1I LTR MaLR 351 384 -25 213 39 0 0 chr1 218639820 218639846 -63553818 + (A)n Simple_repeat Simple_repeat 1 26 0 623 290 29 29 chr1 218640524 218640731 -63552933 - MER20 DNA MER1_type -5 214 8 27 0 0 0 chr1 218640801 218640828 -63552836 + AT_rich Low_complexity Low_complexity 1 27 0 735 276 134 13 chr1 218642182 218642562 -63551102 + L1ME3 LINE L1 5559 5984 -178 501 47 0 0 chr1 218642562 218642626 -63551038 + (TG)n Simple_repeat Simple_repeat 1 64 0 195 214 18 18 chr1 218642804 218642860 -63550804 + MER5C DNA MER1_type 265 320 -4 256 102 41 0 chr1 218643195 218643244 -63550420 + GA-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 218643417 218643438 -63550226 + AT_rich Low_complexity Low_complexity 1 21 0 940 325 168 36 chr1 218643878 218644879 -63548785 + L2 LINE L2 1763 2895 -419 14836 39 2 2 chr1 218644935 218647282 -63546382 - L1P LINE L1 -1846 4300 1952 6855 35 1 0 chr1 218647282 218648129 -63545535 + L1PA4 LINE L1 5324 6171 0 398 52 0 17 chr1 218648198 218648256 -63545408 + (CATA)n Simple_repeat Simple_repeat 3 59 0 403 151 21 0 chr1 218648275 218648368 -63545296 + GA-rich Low_complexity Low_complexity 1 95 0 895 300 52 59 chr1 218648391 218648951 -63544713 + LTR38 LTR ERV1 1 556 0 1013 267 116 3 chr1 218649184 218649573 -63544091 - MER110A LTR ERV1 0 468 36 23 86 0 0 chr1 218649914 218649972 -63543692 + AT_rich Low_complexity Low_complexity 1 58 0 27 0 0 0 chr1 218650567 218650594 -63543070 + AT_rich Low_complexity Low_complexity 1 27 0 244 282 86 8 chr1 218650769 218650886 -63542778 + MARNA DNA Mariner 401 526 -60 194 274 34 128 chr1 218651221 218651401 -63542263 + MIR SINE MIR 57 218 -44 26 30 0 0 chr1 218653260 218653293 -63540371 + AT_rich Low_complexity Low_complexity 1 33 0 3789 169 26 49 chr1 218653320 218654141 -63539523 - L1MA7 LINE L1 -10 6281 5480 423 265 81 33 chr1 218654141 218654352 -63539312 + L1ME3A LINE L1 4103 4323 -1823 274 238 20 13 chr1 218654321 218654420 -63539244 + L1ME1 LINE L1 6073 6179 -4 * 1840 191 40 66 chr1 218655069 218655492 -63538172 + MER47B DNA MER2_type 7 418 0 433 293 136 25 chr1 218655508 218655750 -63537914 + L1ME2 LINE L1 5854 6122 -42 333 268 123 49 chr1 218656294 218656537 -63537127 + L1ME3A LINE L1 4797 5057 -1089 270 291 26 49 chr1 218656643 218656915 -63536749 + L1ME3A LINE L1 5187 5454 -765 456 305 81 46 chr1 218656966 218657130 -63536534 + L1ME3A LINE L1 5548 5705 -463 1609 151 65 37 chr1 218657130 218657454 -63536210 - MER1B DNA MER1_type -4 333 1 456 305 81 46 chr1 218657454 218657683 -63535981 + L1ME3A LINE L1 5705 5962 -206 1968 197 84 22 chr1 218659154 218659616 -63534048 + MER34 LTR ERV1 25 515 -27 413 234 76 103 chr1 218659715 218660005 -63533659 + MER34-int LTR ERV1 72 353 -5978 1963 247 57 72 chr1 218660163 218660970 -63532694 + MER34-int LTR ERV1 355 1149 -5182 2183 178 46 5 chr1 218663463 218663879 -63529785 - MER4C LTR ERV1 -32 433 1 650 347 0 0 chr1 218664123 218664322 -63529342 + L1MA9 LINE L1 256 454 -5501 410 339 97 10 chr1 218664353 218664758 -63528906 + L1MA9 LINE L1 302 729 -5226 6822 212 34 21 chr1 218664776 218666854 -63526810 + L1MA9 LINE L1 3468 5577 -623 2182 202 19 35 chr1 218666854 218667334 -63526330 + MER70A LTR ERVL 1 472 0 6822 212 34 21 chr1 218667334 218667358 -63526306 + L1MA9 LINE L1 5577 5599 -601 800 195 0 29 chr1 218667362 218667536 -63526128 + L1MA9 LINE L1 5758 5926 -274 2593 161 33 62 chr1 218667541 218668174 -63525490 + L1MA9 LINE L1 5586 6200 0 2380 50 7 7 chr1 218668589 218668891 -63524773 - AluY SINE Alu -9 302 1 346 196 21 0 chr1 218669084 218669181 -63524483 + (TA)n Simple_repeat Simple_repeat 1 99 0 22 35 0 0 chr1 218671028 218671057 -63522607 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 218671084 218671112 -63522552 + AT_rich Low_complexity Low_complexity 1 28 0 183 162 0 0 chr1 218672798 218672835 -63520829 + T-rich Low_complexity Low_complexity 1 37 0 42822 44 5 3 chr1 218672879 218679023 -63514641 - L1PA4 LINE L1 -3 6152 1 2008 184 20 72 chr1 218679085 218679448 -63514216 - Tigger2a DNA MER2_type -2275 433 97 573 25 0 37 chr1 218679448 218679529 -63514135 - L1PA4 LINE L1 0 6155 6078 2008 184 20 72 chr1 218679529 218679622 -63514042 - Tigger2a DNA MER2_type -2611 97 1 302 179 18 18 chr1 218679777 218679889 -63513775 + (TA)n Simple_repeat Simple_repeat 1 112 0 421 263 55 83 chr1 218679891 218680108 -63513556 - MIR SINE MIR -24 238 28 25 51 0 0 chr1 218680547 218680586 -63513078 + AT_rich Low_complexity Low_complexity 1 39 0 871 259 82 38 chr1 218681888 218682228 -63511436 + MSTC LTR MaLR 74 428 0 237 98 0 0 chr1 218682278 218682319 -63511345 + (CA)n Simple_repeat Simple_repeat 2 42 0 2081 136 0 0 chr1 218683258 218683560 -63510104 + AluSx SINE Alu 11 312 0 4412 241 27 36 chr1 218683649 218685311 -63508353 + L1PA15 LINE L1 328 2114 -4673 6666 214 18 32 chr1 218685323 218686970 -63506694 + L1PA15 LINE L1 3880 5502 -1295 5103 152 16 3 chr1 218687245 218687456 -63506208 + L1PA15 LINE L1 5477 5684 -1132 1986 134 0 0 chr1 218687456 218687746 -63505918 + AluSg SINE Alu 6 295 -15 5103 152 16 3 chr1 218687746 218688877 -63504787 + L1PA15 LINE L1 5684 6816 0 1442 225 36 17 chr1 218688916 218689272 -63504392 + MLT1A1 LTR MaLR 1 363 -2 201 138 35 17 chr1 218689284 218689342 -63504322 + (TA)n Simple_repeat Simple_repeat 1 59 0 436 271 120 74 chr1 218690264 218690607 -63503057 - L1MDa LINE L1 -876 2025 1572 48 43 0 0 chr1 218691867 218691936 -63501728 + AT_rich Low_complexity Low_complexity 1 69 0 72 87 0 0 chr1 218691976 218692160 -63501504 + AT_rich Low_complexity Low_complexity 1 184 0 2332 101 0 0 chr1 218692402 218692700 -63500964 + AluSg SINE Alu 1 298 -12 1760 160 7 3 chr1 218693180 218693487 -63500177 - AluJb SINE Alu -2 310 3 393 317 0 14 chr1 218693669 218693811 -63499853 - L1M4 LINE L1 -1958 4188 4049 233 186 119 0 chr1 218693864 218693923 -63499741 - L1M4 LINE L1 -2220 3926 3861 1165 217 49 12 chr1 218693923 218694207 -63499457 - MLT1D LTR MaLR 0 505 228 344 230 35 23 chr1 218694230 218694317 -63499347 - MLT1D LTR MaLR -417 88 1 531 320 20 37 chr1 218694360 218694660 -63499004 - L1M4 LINE L1 -2310 3836 3542 624 237 137 40 chr1 218694744 218695181 -63498483 + L1ME2 LINE L1 5641 6151 -13 240 313 0 24 chr1 218697012 218697095 -63496569 + GA-rich Low_complexity Low_complexity 1 81 0 220 304 43 87 chr1 218697257 218697441 -63496223 + MER5B DNA MER1_type 3 178 0 34 65 0 0 chr1 218698545 218698607 -63495057 + AT_rich Low_complexity Low_complexity 1 62 0 307 279 93 16 chr1 218699621 218699750 -63493914 + L1ME4a LINE L1 5939 6077 -44 200 206 0 0 chr1 218700256 218700290 -63493374 + L2 LINE L2 3178 3211 -102 189 89 67 0 chr1 218700294 218700339 -63493325 + (TA)n Simple_repeat Simple_repeat 1 48 0 3557 211 28 48 chr1 218700380 218701158 -63492506 - L1MA9 LINE L1 -37 6275 5518 2412 100 0 0 chr1 218701158 218701469 -63492195 - AluSx SINE Alu -1 311 1 3557 211 28 48 chr1 218701469 218701632 -63492032 - L1MA9 LINE L1 -794 5518 5353 2984 209 36 71 chr1 218701633 218702045 -63491619 + L1 LINE L1 4478 4903 -1243 1926 149 19 27 chr1 218702045 218702421 -63491243 + THE1C LTR MaLR 3 375 0 2984 209 36 71 chr1 218702421 218702892 -63490772 + L1 LINE L1 4903 5330 -816 2178 102 0 16 chr1 218702892 218703197 -63490467 + AluSq SINE Alu 3 302 -11 2984 209 36 71 chr1 218703197 218703233 -63490431 + L1 LINE L1 5330 5366 -780 183 184 0 0 chr1 218703409 218703447 -63490217 + (TATG)n Simple_repeat Simple_repeat 2 39 0 198 71 0 0 chr1 218704247 218704275 -63489389 + (GA)n Simple_repeat Simple_repeat 1 28 0 220 352 80 28 chr1 218704357 218704533 -63489131 + MIR SINE MIR 64 248 -14 260 374 68 16 chr1 218705008 218705198 -63488466 - L2 LINE L2 -266 3047 2848 191 251 29 117 chr1 218705369 218705540 -63488124 - L2 LINE L2 -135 3178 3023 432 318 126 50 chr1 218705696 218705856 -63487808 - L1ME1 LINE L1 -222 5944 5798 222 37 0 0 chr1 218705856 218705883 -63487781 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1913 96 0 0 chr1 218705886 218706147 -63487517 - AluSx SINE Alu -51 261 1 432 318 126 50 chr1 218706147 218706404 -63487260 - L1ME1 LINE L1 -369 5797 5491 24 67 0 0 chr1 218707446 218707491 -63486173 + AT_rich Low_complexity Low_complexity 1 45 0 232 339 78 9 chr1 218708012 218708127 -63485537 - MIR3 SINE MIR -9 199 77 27 0 0 0 chr1 218708170 218708197 -63485467 + AT_rich Low_complexity Low_complexity 1 27 0 392 139 13 0 chr1 218708878 218708957 -63484707 + (TA)n Simple_repeat Simple_repeat 2 81 0 323 247 127 36 chr1 218709400 218709566 -63484098 + MIR SINE MIR 81 261 -1 469 291 94 33 chr1 218710074 218710318 -63483346 + MIR SINE MIR 2 260 -2 26 0 0 0 chr1 218711635 218711661 -63482003 + AT_rich Low_complexity Low_complexity 1 26 0 7614 20 11 2 chr1 218711786 218713321 -63480343 - L1PA3 LINE L1 -9 6146 4601 31 44 0 0 chr1 218713354 218713399 -63480265 + AT_rich Low_complexity Low_complexity 1 45 0 201 178 22 0 chr1 218713399 218713444 -63480220 + GA-rich Low_complexity Low_complexity 2 47 0 21 0 0 0 chr1 218713855 218713876 -63479788 + AT_rich Low_complexity Low_complexity 1 21 0 282 347 10 0 chr1 218713937 218714035 -63479629 - MIR SINE MIR -86 176 78 21 0 0 0 chr1 218714937 218714958 -63478706 + AT_rich Low_complexity Low_complexity 1 21 0 2223 65 0 42 chr1 218715045 218715352 -63478312 + AluY SINE Alu 1 294 -17 207 0 0 0 chr1 218716300 218716323 -63477341 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 23 54 0 0 chr1 218717358 218717395 -63476269 + AT_rich Low_complexity Low_complexity 1 37 0 182 366 36 0 chr1 218717946 218718058 -63475606 + MIR SINE MIR 109 224 -38 400 349 85 34 chr1 218718121 218718473 -63475191 - HERV16 LTR ERVL -2021 3464 3095 611 267 132 21 chr1 218718571 218718859 -63474805 + L1MCc LINE L1 953 1272 -5151 22 35 0 0 chr1 218718939 218718968 -63474696 + AT_rich Low_complexity Low_complexity 1 29 0 1770 181 19 8 chr1 218719022 218719381 -63474283 + MER47A DNA MER2_type 1 363 -3 342 236 55 9 chr1 218719665 218719679 -63473985 - L1MA10 LINE L1 0 6334 6321 1620 251 137 31 chr1 218719679 218720543 -63473121 - L1ME2 LINE L1 -9 6155 5151 6038 109 13 10 chr1 218720543 218721991 -63471673 - L1PA10 LINE L1 -10 6158 4705 1620 251 137 31 chr1 218721991 218722200 -63471464 - L1ME2 LINE L1 -1013 5151 4965 392 337 31 5 chr1 218722427 218722623 -63471041 - HERV16 LTR ERVL -4603 393 193 364 331 78 0 chr1 218722811 218722965 -63470699 - LTR16A LTR ERVL -57 393 228 405 39 0 0 chr1 218723251 218723302 -63470362 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr1 218723821 218723842 -63469822 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 218723888 218723916 -63469748 + AT_rich Low_complexity Low_complexity 1 28 0 335 304 54 33 chr1 218723943 218724127 -63469537 - L1ME2 LINE L1 -2873 3273 3086 22 35 0 0 chr1 218724153 218724182 -63469482 + AT_rich Low_complexity Low_complexity 1 29 0 1340 160 22 101 chr1 218724292 218724610 -63469054 - AluYb8 SINE Alu -2 316 24 215 160 20 0 chr1 218724629 218724679 -63468985 + (CA)n Simple_repeat Simple_repeat 2 52 0 22 35 0 0 chr1 218724845 218724874 -63468790 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr1 218725145 218725178 -63468486 + AT_rich Low_complexity Low_complexity 1 33 0 5231 127 31 7 chr1 218726072 218726928 -63466736 - L1PA16 LINE L1 -1 6165 5292 2992 153 10 6 chr1 218727782 218728264 -63465400 + LOR1a LTR ERV1 13 496 -1 1452 227 25 0 chr1 218729796 218730098 -63463566 + AluJo SINE Alu 1 309 0 30 0 0 0 chr1 218730766 218730796 -63462868 + AT_rich Low_complexity Low_complexity 1 30 0 461 354 61 27 chr1 218732665 218732831 -63460833 - MLT1K LTR MaLR 0 588 408 432 0 0 0 chr1 218732831 218732879 -63460785 + (TC)n Simple_repeat Simple_repeat 1 48 0 461 354 61 27 chr1 218732879 218732975 -63460689 - MLT1K LTR MaLR -180 408 317 2152 109 3 0 chr1 218733562 218733855 -63459809 - AluSx SINE Alu -18 294 1 240 35 0 0 chr1 218733906 218733935 -63459729 + (TG)n Simple_repeat Simple_repeat 2 30 0 1740 163 7 14 chr1 218734113 218734401 -63459263 + AluSx SINE Alu 1 286 -26 200 308 139 81 chr1 218734489 218734849 -63458815 - L3 LINE CR1 -146 1431 1051 1617 152 80 0 chr1 218735270 218735546 -63458118 - AluSx SINE Alu -14 298 1 348 150 3 23 chr1 218735588 218735669 -63457995 - Alu SINE Alu -253 50 1 44 0 0 0 chr1 218736356 218736400 -63457264 + AT_rich Low_complexity Low_complexity 1 44 0 268 152 50 50 chr1 218738666 218738765 -63454899 - L1MCa LINE L1 -4084 2342 2244 300 354 28 14 chr1 218738775 218738919 -63454745 - L1MCa LINE L1 -4387 2220 2075 4994 194 17 5 chr1 218738930 218740675 -63452989 + L1PA16 LINE L1 4402 6166 0 687 216 31 16 chr1 218740721 218740915 -63452749 - L1MCa LINE L1 -4740 1686 1490 350 297 25 8 chr1 218740950 218741068 -63452596 - L1MCa LINE L1 -6271 155 36 26 0 0 0 chr1 218741278 218741304 -63452360 + AT_rich Low_complexity Low_complexity 1 26 0 239 206 32 0 chr1 218741918 218741981 -63451683 + L1MDa LINE L1 2191 2255 -4285 1033 179 0 5 chr1 218741990 218742180 -63451484 - AluSg/x SINE Alu -1 309 121 6312 89 11 2 chr1 218742193 218743617 -63450047 + L1PA10 LINE L1 4729 6167 -1 3030 274 52 19 chr1 218743639 218745267 -63448397 + L1MDa LINE L1 2299 3985 -2555 1063 258 132 64 chr1 218745679 218746102 -63447562 - MLT2E LTR ERVL 0 628 177 263 184 23 103 chr1 218746115 218746155 -63447509 - Alu SINE Alu 0 301 270 1563 69 0 35 chr1 218746155 218746358 -63447306 - AluSq SINE Alu -117 196 1 263 184 23 103 chr1 218746358 218746404 -63447260 - Alu SINE Alu -31 270 222 * 586 316 24 29 chr1 218746382 218746588 -63447076 - MLT2E LTR ERVL -409 219 15 12202 49 3 0 chr1 218746590 218748107 -63445557 + L1P LINE L1 3742 5262 -884 249 313 70 16 chr1 218748515 218748643 -63445021 - MLT1J LTR MaLR -257 254 120 209 356 8 42 chr1 218749174 218749292 -63444372 - MIR SINE MIR -59 203 90 3292 175 35 19 chr1 218749447 218750133 -63443531 + L1PB4 LINE L1 5460 6156 0 363 367 62 13 chr1 218750319 218750545 -63443119 + MIR SINE MIR 20 256 -6 330 228 63 0 chr1 218751900 218751978 -63441686 + Charlie7 DNA MER1_type 2108 2190 -422 2152 134 31 23 chr1 218751978 218752328 -63441336 - THE1B LTR MaLR 0 364 12 10698 113 16 3 chr1 218752333 218753893 -63439771 - THE1B-int LTR MaLR 0 1580 1 1876 177 33 25 chr1 218753893 218754254 -63439410 - THE1B LTR MaLR 0 364 1 1625 174 35 3 chr1 218754290 218754572 -63439092 - AluJb SINE Alu -21 291 1 359 213 252 25 chr1 218754574 218754663 -63439001 + Charlie7 DNA MER1_type 2187 2255 -357 234 62 0 0 chr1 218754663 218754695 -63438969 + (TA)n Simple_repeat Simple_repeat 2 33 0 359 213 252 25 chr1 218754695 218754891 -63438773 + Charlie7 DNA MER1_type 2255 2537 -75 210 297 62 0 chr1 218755693 218755757 -63437907 - L2 LINE L2 0 3272 3205 244 188 0 72 chr1 218755998 218756067 -63437597 - L1MA7 LINE L1 -133 6158 6095 * 503 188 18 0 chr1 218756066 218756178 -63437486 + L1MA7 LINE L1 6159 6272 -19 2350 86 0 0 chr1 218756198 218756501 -63437163 - AluY SINE Alu -8 303 1 1248 191 3 91 chr1 218756501 218756830 -63436834 - AluJo SINE Alu -12 300 1 22 0 0 0 chr1 218756830 218756852 -63436812 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr1 218757371 218757406 -63436258 + AT_rich Low_complexity Low_complexity 1 35 0 267 103 0 0 chr1 218757750 218757789 -63435875 + (TG)n Simple_repeat Simple_repeat 2 40 0 248 311 33 0 chr1 218757839 218757929 -63435735 + L1MB8 LINE L1 5895 5987 -191 21 71 0 0 chr1 218758168 218758210 -63435454 + AT_rich Low_complexity Low_complexity 1 42 0 253 245 0 0 chr1 218758248 218758297 -63435367 + MER5B DNA MER1_type 1 49 -129 36290 89 27 7 chr1 218758321 218764335 -63429329 - L1PA6 LINE L1 -3 6151 11 350 318 7 53 chr1 218764340 218764491 -63429173 + MER5B DNA MER1_type 29 172 -6 338 78 59 0 chr1 218764936 218764987 -63428677 - MLT2B1 LTR ERVL 0 520 467 207 0 0 0 chr1 218764999 218765022 -63428642 + (CA)n Simple_repeat Simple_repeat 2 24 0 1262 219 56 40 chr1 218765283 218765672 -63427992 - MLT2B1 LTR ERVL -40 404 1 204 125 0 0 chr1 218766891 218766923 -63426741 + (TG)n Simple_repeat Simple_repeat 2 33 0 246 216 0 52 chr1 218766972 218767069 -63426595 + L1MC4 LINE L1 6612 6703 -1339 1561 133 21 0 chr1 218767073 218767313 -63426351 - AluSx SINE Alu -67 245 1 247 256 102 20 chr1 218768266 218768437 -63425227 + L1 LINE L1 4884 5072 -1074 207 0 0 0 chr1 218768596 218768619 -63425045 + (CA)n Simple_repeat Simple_repeat 1 23 0 321 293 23 10 chr1 218768631 218768814 -63424850 + L1P5 LINE L1 5295 5447 -707 844 308 45 28 chr1 218768834 218769234 -63424430 - L1MEc LINE L1 -5953 443 37 311 277 75 61 chr1 218769920 218770106 -63423558 + L1MC5 LINE L1 7537 7730 -231 2126 124 16 44 chr1 218770106 218770492 -63423172 + THE1C LTR MaLR 1 375 0 311 277 75 61 chr1 218770492 218770583 -63423081 + L1MC5 LINE L1 7730 7818 -143 1082 201 101 34 chr1 218770731 218770999 -63422665 + AluJo SINE Alu 1 286 -16 21 0 0 0 chr1 218771005 218771026 -63422638 + AT_rich Low_complexity Low_complexity 1 21 0 723 270 83 5 chr1 218771274 218771478 -63422186 + MER58A DNA MER1_type 5 224 0 291 140 0 0 chr1 218772669 218772719 -63420945 + (TCCCC)n Simple_repeat Simple_repeat 5 54 0 429 214 0 0 chr1 218772726 218772824 -63420840 + T-rich Low_complexity Low_complexity 1 98 0 1269 179 31 72 chr1 218772856 218773175 -63420489 - AluJo SINE Alu -4 308 3 484 75 0 0 chr1 218773331 218773398 -63420266 - MER41B LTR ERV1 -88 547 481 27 49 0 0 chr1 218773915 218773956 -63419708 + AT_rich Low_complexity Low_complexity 1 41 0 21 82 0 0 chr1 218774084 218774133 -63419531 + AT_rich Low_complexity Low_complexity 1 49 0 186 313 31 0 chr1 218774210 218774274 -63419390 - MIR SINE MIR -119 143 78 243 263 0 0 chr1 218774723 218774803 -63418861 + (TA)n Simple_repeat Simple_repeat 1 80 0 545 244 97 25 chr1 218774825 218775144 -63418520 + L1M4 LINE L1 4936 5277 -869 268 244 51 115 chr1 218775280 218775497 -63418167 - L1ME3A LINE L1 -6 6164 5962 1421 196 28 74 chr1 218775649 218776002 -63417662 - MER1B DNA MER1_type 0 337 1 260 104 104 7 chr1 218776379 218776523 -63417141 + (TA)n Simple_repeat Simple_repeat 1 158 0 2036 122 7 0 chr1 218776523 218776810 -63416854 - AluSx SINE Alu -23 289 1 822 255 90 28 chr1 218777263 218777553 -63416111 + LTR41 LTR ERVL 1 308 -465 2385 282 47 78 chr1 218777555 218778671 -63414993 + ERVL LTR ERVL 2171 3251 -2513 1262 241 36 140 chr1 218779109 218779961 -63413703 + LTR41 LTR ERVL 4 767 -6 1902 182 6 6 chr1 218782464 218782816 -63410848 + L1MC1 LINE L1 5850 6201 -132 967 89 0 0 chr1 218782818 218782942 -63410722 + AluSp SINE Alu 2 125 -188 823 166 14 0 chr1 218782944 218783083 -63410581 + L1MC1 LINE L1 6187 6327 -6 236 250 0 17 chr1 218783097 218783157 -63410507 + GA-rich Low_complexity Low_complexity 2 60 0 292 169 26 13 chr1 218783159 218783236 -63410428 + G-rich Low_complexity Low_complexity 6 83 0 1322 235 119 17 chr1 218783530 218783875 -63409789 - MER77 LTR ERV1 -4 601 222 22 35 0 0 chr1 218784786 218784815 -63408849 + AT_rich Low_complexity Low_complexity 1 29 0 400 279 29 29 chr1 218785375 218785515 -63408149 - MIR SINE MIR 0 262 123 194 216 0 0 chr1 218786142 218786179 -63407485 - L2 LINE L2 -1 3271 3235 24 0 0 0 chr1 218786218 218786242 -63407422 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr1 218786961 218786984 -63406680 + AT_rich Low_complexity Low_complexity 1 23 0 1930 112 25 3 chr1 218788591 218788877 -63404787 - AluSc SINE Alu -13 296 5 1891 174 3 32 chr1 218789144 218789518 -63404146 - L1MA9 LINE L1 0 6312 5950 21 57 0 0 chr1 218789652 218789687 -63403977 + AT_rich Low_complexity Low_complexity 1 35 0 859 239 23 5 chr1 218789944 218790149 -63403515 - L1MA7 LINE L1 -174 6117 5906 834 144 43 27 chr1 218790149 218790336 -63403328 + L1MA7 LINE L1 6102 6291 0 859 239 23 5 chr1 218790336 218790348 -63403316 - L1MA7 LINE L1 -385 5906 5896 26 50 0 0 chr1 218791351 218791391 -63402273 + AT_rich Low_complexity Low_complexity 1 40 0 541 214 23 46 chr1 218791538 218791669 -63401995 - FLAM_A SINE Alu -4 129 2 2517 67 0 0 chr1 218792157 218792485 -63401179 + L1PA4 LINE L1 5828 6155 0 21 0 0 0 chr1 218792749 218792770 -63400894 + AT_rich Low_complexity Low_complexity 1 21 0 6545 80 9 6 chr1 218792857 218793758 -63399906 - L1PA10 LINE L1 -10 6158 5255 1366 64 0 0 chr1 218794084 218794256 -63399408 - L1PA5 LINE L1 -392 5762 5591 3058 50 0 0 chr1 218794256 218794633 -63399031 + L1PA5 LINE L1 5773 6151 -3 23 0 0 0 chr1 218794642 218794665 -63398999 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr1 218794987 218795029 -63398635 + AT_rich Low_complexity Low_complexity 1 42 0 33 25 0 0 chr1 218796444 218796484 -63397180 + AT_rich Low_complexity Low_complexity 1 40 0 342 0 0 0 chr1 218797122 218797160 -63396504 + (TG)n Simple_repeat Simple_repeat 2 39 0 1754 153 11 0 chr1 218797160 218797441 -63396223 - AluSx SINE Alu -25 287 4 1879 121 35 7 chr1 218797443 218797732 -63395932 - LTR9 LTR ERV1 -315 297 1 * 2052 177 42 5 chr1 218797732 218798103 -63395561 + MSTB LTR MaLR 42 426 0 810 299 51 10 chr1 218798244 218798430 -63395234 - MLT1E2 LTR MaLR 0 626 420 246 32 0 0 chr1 218798430 218798461 -63395203 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 810 299 51 10 chr1 218798461 218798588 -63395076 - MLT1E2 LTR MaLR -206 420 300 270 267 172 0 chr1 218798654 218798770 -63394894 - MLT1E2 LTR MaLR -319 307 172 5782 188 24 82 chr1 218799364 218799686 -63393978 - L1MA4 LINE L1 -325 5975 5636 1451 212 16 23 chr1 218799686 218799993 -63393671 - AluJo SINE Alu -1 311 7 5782 188 24 82 chr1 218799993 218802777 -63390887 - L1MA4 LINE L1 -664 5636 3177 278 235 0 25 chr1 218805355 218805436 -63388228 - L1MC4 LINE L1 -1339 6703 6625 214 330 33 11 chr1 218806514 218806605 -63387059 + MIR3 SINE MIR 93 185 -23 42 65 0 0 chr1 218806780 218806857 -63386807 + AT_rich Low_complexity Low_complexity 1 77 0 187 385 0 0 chr1 218807113 218807196 -63386468 + L2 LINE L2 2244 2326 -988 670 324 178 30 chr1 218807299 218807867 -63385797 + L2 LINE L2 2323 2974 -340 464 309 124 49 chr1 218807902 218808403 -63385261 + L2 LINE L2 2739 3274 -39 3469 59 5 0 chr1 218809056 218809500 -63384164 + L1PA7 LINE L1 5704 6149 -5 529 160 65 0 chr1 218810275 218810398 -63383266 - L1MA8 LINE L1 -22 6290 6142 251 323 69 23 chr1 218810622 218810752 -63382912 + MIR SINE MIR 15 150 -112 31 68 0 0 chr1 218811692 218811751 -63381913 + AT_rich Low_complexity Low_complexity 1 59 0 4078 174 39 23 chr1 218812147 218812664 -63381000 - L1MA8 LINE L1 -109 6182 5644 414 0 0 0 chr1 218812664 218812710 -63380954 + (TC)n Simple_repeat Simple_repeat 2 47 0 4078 174 39 23 chr1 218812710 218813065 -63380599 - L1MA8 LINE L1 -647 5644 5296 464 200 38 56 chr1 218813070 218813230 -63380434 + L1MA8 LINE L1 6135 6291 0 1006 46 8 0 chr1 218814685 218814815 -63378849 + L1PA4 LINE L1 6022 6152 -3 25 0 0 0 chr1 218814815 218814840 -63378824 + AT_rich Low_complexity Low_complexity 1 25 0 1143 199 0 0 chr1 218814894 218815105 -63378559 + L1P LINE L1 4838 5048 -1098 1244 110 0 16 chr1 218815447 218815629 -63378035 + AluSg/x SINE Alu 122 300 -12 189 226 0 0 chr1 218816440 218816524 -63377140 + T-rich Low_complexity Low_complexity 1 84 0 42292 37 21 2 chr1 218816525 218822558 -63371106 - L1PA3 LINE L1 -3 6152 4 600 260 93 81 chr1 218822769 218823120 -63370544 - MLT2F LTR ERVL -175 488 129 2462 101 5 40 chr1 218823120 218823334 -63370330 - THE1B LTR MaLR 0 364 167 1952 112 34 17 chr1 218823334 218823628 -63370036 + AluY SINE Alu 1 299 -12 2462 101 5 40 chr1 218823628 218823790 -63369874 - THE1B LTR MaLR -197 167 1 600 260 93 81 chr1 218823790 218823880 -63369784 - MLT2F LTR ERVL -534 129 42 217 259 0 0 chr1 218824247 218824301 -63369363 + (TA)n Simple_repeat Simple_repeat 2 55 0 201 393 98 9 chr1 218825420 218825644 -63368020 + L3 LINE CR1 449 692 -885 210 71 0 0 chr1 218825775 218825803 -63367861 + (TA)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr1 218826806 218826850 -63366814 + AT_rich Low_complexity Low_complexity 1 44 0 231 36 0 0 chr1 218827012 218827040 -63366624 + (TG)n Simple_repeat Simple_repeat 1 28 0 18578 77 15 1 chr1 218827785 218831221 -63362443 + L1PA8 LINE L1 2752 6181 0 590 106 24 0 chr1 218831221 218831306 -63362358 + LTR19B LTR ERV1 440 526 -54 213 39 0 0 chr1 218831313 218831339 -63362325 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr1 218832200 218832221 -63361443 + AT_rich Low_complexity Low_complexity 1 21 0 450 290 39 39 chr1 218832980 218833135 -63360529 - MLT2E LTR ERVL -459 169 15 13584 33 2 1 chr1 218833137 218835627 -63358037 + L1PA3 LINE L1 3742 6237 0 2455 167 59 6 chr1 218836239 218836386 -63357278 - L1M2 LINE L1 -494 5806 5668 270 0 0 0 chr1 218836386 218836416 -63357248 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 279 0 0 0 chr1 218836415 218836446 -63357218 + (TA)n Simple_repeat Simple_repeat 2 32 0 2455 167 59 6 chr1 218836416 218836788 -63356876 - L1M2 LINE L1 -632 5668 5291 457 206 38 56 chr1 218836788 218836948 -63356716 + L1MA8 LINE L1 6135 6291 0 1006 46 8 0 chr1 218838403 218838533 -63355131 + L1PA4 LINE L1 6022 6152 -3 25 0 0 0 chr1 218838533 218838558 -63355106 + AT_rich Low_complexity Low_complexity 1 25 0 1143 199 0 0 chr1 218838612 218838823 -63354841 + L1P LINE L1 4838 5048 -1098 1244 110 0 16 chr1 218839165 218839347 -63354317 + AluSg/x SINE Alu 122 300 -12 189 154 0 0 chr1 218840158 218840197 -63353467 + T-rich Low_complexity Low_complexity 2 40 0 42165 39 21 2 chr1 218840219 218846274 -63347390 - L1PA3 LINE L1 0 6155 4 602 269 88 77 chr1 218846485 218846836 -63346828 - MLT2F LTR ERVL -175 488 129 2462 101 5 40 chr1 218846836 218847050 -63346614 - THE1B LTR MaLR 0 364 167 1930 116 34 17 chr1 218847050 218847344 -63346320 + AluY SINE Alu 1 299 -12 2462 101 5 40 chr1 218847344 218847506 -63346158 - THE1B LTR MaLR -197 167 1 602 269 88 77 chr1 218847506 218847596 -63346068 - MLT2F LTR ERVL -534 129 42 217 259 0 0 chr1 218847963 218848017 -63345647 + (TA)n Simple_repeat Simple_repeat 2 55 0 209 388 98 9 chr1 218849135 218849359 -63344305 + L3 LINE CR1 449 692 -885 210 71 0 0 chr1 218849491 218849519 -63344145 + (TA)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr1 218850520 218850564 -63343100 + AT_rich Low_complexity Low_complexity 1 44 0 231 36 0 0 chr1 218850726 218850754 -63342910 + (TG)n Simple_repeat Simple_repeat 1 28 0 2328 86 0 0 chr1 218851383 218851684 -63341980 + AluY SINE Alu 1 301 -10 365 286 59 39 chr1 218852021 218852430 -63341234 - L1M4 LINE L1 -2882 3264 2848 264 281 52 10 chr1 218852527 218852623 -63341041 - MIR SINE MIR 0 262 163 216 0 0 0 chr1 218852781 218852805 -63340859 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chr1 218853352 218853387 -63340277 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr1 218853475 218853524 -63340140 + AT_rich Low_complexity Low_complexity 1 49 0 26 30 0 0 chr1 218853570 218853603 -63340061 + AT_rich Low_complexity Low_complexity 1 33 0 419 123 0 14 chr1 218853613 218853686 -63339978 + (TA)n Simple_repeat Simple_repeat 1 72 0 1107 64 7 0 chr1 218853885 218854025 -63339639 - AluY SINE Alu -20 291 151 8686 107 12 1 chr1 218854058 218856188 -63337476 + L1PA8 LINE L1 4040 6163 -9 609 103 23 0 chr1 218856201 218856288 -63337376 + LTR19B LTR ERV1 438 526 -54 213 39 0 0 chr1 218856295 218856321 -63337343 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr1 218857183 218857204 -63336460 + AT_rich Low_complexity Low_complexity 1 21 0 3662 95 0 6 chr1 218859515 218860029 -63333635 - MER9 LTR ERVK 0 511 1 328 326 30 15 chr1 218860409 218860541 -63333123 - L2 LINE L2 0 3313 3180 752 306 63 129 chr1 218860586 218861827 -63331837 - L2 LINE L2 -266 3047 1890 347 159 0 58 chr1 218861835 218861904 -63331760 + L1MA7 LINE L1 6194 6258 -33 1307 231 120 40 chr1 218861904 218862258 -63331406 - MER44D DNA MER2_type -1882 605 143 304 20 41 20 chr1 218862258 218862307 -63331357 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1307 231 120 40 chr1 218862307 218862451 -63331213 - MER44D DNA MER2_type -2344 143 12 180 311 33 0 chr1 218862836 218862897 -63330767 - L2 LINE L2 0 3313 3251 24 32 0 0 chr1 218864031 218864062 -63329602 + AT_rich Low_complexity Low_complexity 1 31 0 213 330 85 11 chr1 218864710 218864804 -63328860 + MIR3 SINE MIR 68 168 -40 1305 180 62 13 chr1 218865326 218865631 -63328033 + L1MC3 LINE L1 7459 7778 -7 209 208 0 0 chr1 218866026 218866074 -63327590 + (TA)n Simple_repeat Simple_repeat 2 49 0 285 29 0 0 chr1 218866185 218866219 -63327445 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 532 23 58 0 chr1 218866586 218866672 -63326992 + (TA)n Simple_repeat Simple_repeat 1 91 0 294 29 0 0 chr1 218867676 218867711 -63325953 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr1 218867715 218867738 -63325926 + AT_rich Low_complexity Low_complexity 1 23 0 288 347 88 8 chr1 218868789 218869028 -63324636 + L2 LINE L2 1242 1499 -1815 262 328 62 85 chr1 218869049 218869224 -63324440 + L2 LINE L2 1725 1890 -1424 1930 133 7 13 chr1 218869224 218869524 -63324140 + AluSx SINE Alu 1 298 -14 262 328 62 85 chr1 218869524 218869689 -63323975 + L2 LINE L2 1890 2057 -1257 213 121 0 0 chr1 218870099 218870132 -63323532 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 1928 148 3 3 chr1 218871166 218871471 -63322193 - AluSx SINE Alu -7 305 1 729 312 138 20 chr1 218871941 218872390 -63321274 + L2 LINE L2 2811 3312 -1 21 0 0 0 chr1 218872928 218872949 -63320715 + AT_rich Low_complexity Low_complexity 1 21 0 204 67 0 0 chr1 218874107 218874137 -63319527 + (A)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr1 218874195 218874222 -63319442 + AT_rich Low_complexity Low_complexity 1 27 0 2573 52 0 3 chr1 218875127 218875437 -63318227 - AluY SINE Alu -2 309 1 6180 152 12 15 chr1 218875779 218876706 -63316958 - L1MA2 LINE L1 0 6304 5375 2189 127 8 36 chr1 218876706 218877092 -63316572 + THE1C LTR MaLR 1 375 0 6180 152 12 15 chr1 218877092 218877177 -63316487 - L1MA2 LINE L1 -929 5375 5291 252 0 0 0 chr1 218877177 218877205 -63316459 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6180 152 12 15 chr1 218877205 218877724 -63315940 - L1MA2 LINE L1 -1013 5291 4774 1577 157 15 0 chr1 218877873 218878147 -63315517 - L1PA16 LINE L1 -9 6157 5880 3135 142 22 8 chr1 218878150 218878685 -63314979 + L1PA16 LINE L1 5340 5882 -284 27 49 0 0 chr1 218879874 218879915 -63313749 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 218881103 218881124 -63312540 + AT_rich Low_complexity Low_complexity 1 21 0 1624 138 0 4 chr1 218881487 218881719 -63311945 + AluSx SINE Alu 1 231 -81 486 152 105 0 chr1 218881725 218881830 -63311834 + AluSg/x SINE Alu 184 299 -13 222 379 55 41 chr1 218882117 218882262 -63311402 - L2 LINE L2 0 3272 3126 35 78 0 0 chr1 218883114 218883191 -63310473 + AT_rich Low_complexity Low_complexity 1 77 0 267 79 0 0 chr1 218883512 218883550 -63310114 + (A)n Simple_repeat Simple_repeat 1 38 0 21 57 0 0 chr1 218883757 218883792 -63309872 + AT_rich Low_complexity Low_complexity 1 35 0 36 62 0 0 chr1 218884017 218884081 -63309583 + AT_rich Low_complexity Low_complexity 1 64 0 22336 174 37 36 chr1 218884178 218890566 -63303098 + L1PA10 LINE L1 10 6479 -4 23 33 0 0 chr1 218890598 218890628 -63303036 + AT_rich Low_complexity Low_complexity 1 30 0 306 305 81 38 chr1 218890721 218890931 -63302733 - L1ME LINE L1 -499 5667 5449 641 242 21 41 chr1 218891123 218891317 -63302347 + L2 LINE L2 1839 2028 -1286 22 0 0 0 chr1 218891318 218891340 -63302324 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr1 218891377 218891414 -63302250 + AT_rich Low_complexity Low_complexity 1 37 0 25 75 0 0 chr1 218892102 218892155 -63301509 + AT_rich Low_complexity Low_complexity 1 53 0 2180 71 6 56 chr1 218892518 218892840 -63300824 + AluY SINE Alu 1 306 -5 28 0 0 0 chr1 218893270 218893298 -63300366 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr1 218894967 218895025 -63298639 + AT_rich Low_complexity Low_complexity 1 58 0 627 324 127 50 chr1 218895210 218895713 -63297951 - MLT1G1 LTR MaLR -4 545 1 282 270 74 93 chr1 218895901 218896116 -63297548 - MLT1G1-int LTR MaLR -170 1201 991 672 238 75 4 chr1 218896249 218896489 -63297175 + L1ME LINE L1 732 988 -5082 28 0 0 0 chr1 218896641 218896669 -63296995 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 218896701 218896723 -63296941 + AT_rich Low_complexity Low_complexity 1 22 0 2282 108 0 9 chr1 218897116 218897431 -63296233 + AluSx SINE Alu 1 312 0 21 36 0 0 chr1 218897416 218897444 -63296220 + AT_rich Low_complexity Low_complexity 1 28 0 1690 341 102 26 chr1 218897571 218898966 -63294698 - L2 LINE L2 -124 3189 1683 650 275 74 25 chr1 218898966 218899290 -63294374 - L1ME1 LINE L1 -31 6135 5796 766 245 10 30 chr1 218899294 218899494 -63294170 + MLT1E LTR MaLR 396 591 -2 866 252 59 0 chr1 218899495 218899749 -63293915 - L1ME1 LINE L1 -774 5372 5104 2273 81 0 13 chr1 218900592 218900890 -63292774 + AluSc SINE Alu 1 294 -15 500 329 52 14 chr1 218902131 218902341 -63291323 - MIR SINE MIR -43 219 2 978 194 20 5 chr1 218902778 218902979 -63290685 - MER3 DNA MER1_type -4 205 2 1645 222 14 14 chr1 218903524 218903894 -63289770 + MLT1A2 LTR MaLR 1 370 -4 377 310 84 25 chr1 218904404 218904607 -63289057 + L1M4 LINE L1 3128 3342 -2804 519 281 34 86 chr1 218904823 218905207 -63288457 + L1M4 LINE L1 3614 3977 -2169 237 198 0 58 chr1 218905226 218905312 -63288352 + (TA)n Simple_repeat Simple_repeat 2 82 0 246 81 0 0 chr1 218905365 218905402 -63288262 + (TG)n Simple_repeat Simple_repeat 1 37 0 416 319 42 42 chr1 218905555 218905768 -63287896 + MLT1I LTR MaLR 98 310 -99 25 31 0 0 chr1 218906723 218906755 -63286909 + AT_rich Low_complexity Low_complexity 1 32 0 31 68 0 0 chr1 218908211 218908270 -63285394 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr1 218908667 218908697 -63284967 + AT_rich Low_complexity Low_complexity 1 30 0 2403 204 6 17 chr1 218908831 218909351 -63284313 - L1 LINE L1 -1156 4990 4477 568 240 54 60 chr1 218909350 218909667 -63283997 + L1ME2 LINE L1 2053 2367 -4029 * 782 286 50 35 chr1 218909803 218909932 -63283732 - L1MEc LINE L1 -4920 1476 1350 3212 137 67 0 chr1 218909932 218910451 -63283213 + MER41C LTR ERV1 1 554 0 782 286 50 35 chr1 218910451 218910804 -63282860 - L1MEc LINE L1 -5046 1350 987 836 325 43 38 chr1 218910907 218911109 -63282555 - L1MEc LINE L1 -5667 729 529 2097 121 0 0 chr1 218911109 218911426 -63282238 + AluSg SINE Alu 1 317 0 836 325 43 38 chr1 218911426 218911668 -63281996 - L1MEc LINE L1 -5867 529 282 2285 69 0 31 chr1 218911790 218912107 -63281557 - AluY SINE Alu -4 307 1 263 321 53 27 chr1 218912154 218912341 -63281323 + MLT1-int LTR MaLR 703 894 -477 1545 231 38 11 chr1 218913098 218913445 -63280219 + MLT1A1 LTR MaLR 3 358 -7 298 289 116 52 chr1 218913452 218913953 -63279711 - L1MCa LINE L1 -4967 1459 927 1845 145 0 20 chr1 218913981 218914285 -63279379 - AluSx SINE Alu -14 298 1 1242 249 133 94 chr1 218914307 218914922 -63278742 - MLT1E1 LTR MaLR -13 641 3 1823 254 37 64 chr1 218916692 218917946 -63275718 + L1ME1 LINE L1 4884 6163 -3 779 309 67 42 chr1 218917956 218918908 -63274756 + L1ME2 LINE L1 3908 4883 -1332 6052 182 23 40 chr1 218918918 218920649 -63273015 - L1M2 LINE L1 -642 5649 3941 1794 119 4 0 chr1 218920649 218920900 -63272764 - AluSx SINE Alu -60 252 1 6052 182 23 40 chr1 218920900 218920949 -63272715 - L1M2 LINE L1 -2350 3941 3893 1344 165 6 118 chr1 218920949 218921288 -63272376 + AluSx SINE Alu 1 301 -1 235 210 62 0 chr1 218921295 218921376 -63272288 + GA-rich Low_complexity Low_complexity 5 90 0 348 218 208 10 chr1 218921377 218921478 -63272186 - L1M2 LINE L1 -2244 3902 3782 712 114 9 0 chr1 218921488 218921593 -63272071 - AluSp/q SINE Alu -8 305 200 1204 188 45 4 chr1 218921596 218921862 -63271802 - L1M2 LINE L1 -2358 3788 3512 1717 270 65 46 chr1 218921878 218922792 -63270872 + L1ME2 LINE L1 5267 6199 -34 796 220 26 31 chr1 218922795 218922986 -63270678 - L1MC3 LINE L1 -1030 6755 6566 597 224 70 0 chr1 218922980 218923123 -63270541 - L1MC3 LINE L1 -2124 5661 5509 * 4775 226 50 10 chr1 218923243 218924412 -63269252 - L1MC3 LINE L1 -6 7779 6564 1486 229 51 17 chr1 218924412 218924483 -63269181 - L1MC3 LINE L1 -743 5403 5336 1607 107 0 9 chr1 218924483 218924708 -63268956 + AluSc SINE Alu 73 295 -14 1486 229 51 17 chr1 218924708 218925184 -63268480 - L1MC3 LINE L1 -810 5336 5089 1190 248 33 58 chr1 218925186 218925582 -63268082 - L1MCb LINE L1 -5657 388 3 422 183 135 96 chr1 218928094 218928302 -63265362 + MER69 DNA AcHobo 2096 2311 -215 246 167 0 0 chr1 218928329 218928365 -63265299 - tRNA-Lys-AAG tRNA tRNA -40 36 1 778 201 13 0 chr1 218928404 218928563 -63265101 - L1MB1 LINE L1 -166 6002 5842 232 250 48 0 chr1 218928559 218928643 -63265021 + L1MB1 LINE L1 6079 6166 -2 * 291 250 111 17 chr1 218928682 218928854 -63264810 + MER69 DNA AcHobo 2329 2516 -10 2435 114 0 14 chr1 218929291 218929651 -63264013 + THE1A LTR MaLR 1 355 0 1677 111 4 0 chr1 218929839 218930064 -63263600 + AluSx SINE Alu 27 252 -60 1266 156 4 238 chr1 218930064 218930758 -63262906 + L1P LINE L1 4691 5222 -924 485 196 0 10 chr1 218930767 218930869 -63262795 - L1 LINE L1 -1903 4243 4143 2853 162 8 0 chr1 218930888 218931715 -63261949 + L1PA14 LINE L1 4873 5706 -455 2086 104 179 148 chr1 218931772 218932421 -63261243 - LTR12 LTR ERV1 -133 2023 57 242 250 0 0 chr1 218932425 218932477 -63261187 - LTR30 LTR ERV1 -670 52 1 1828 142 0 13 chr1 218932477 218932779 -63260885 + L1PA14 LINE L1 5733 6030 -131 21 36 0 0 chr1 218933131 218933159 -63260505 + AT_rich Low_complexity Low_complexity 1 28 0 333 127 96 0 chr1 218933613 218933926 -63259738 + (TA)n Simple_repeat Simple_repeat 1 343 0 340 157 48 30 chr1 218933930 218934268 -63259396 + (TATAA)n Simple_repeat Simple_repeat 1 344 0 * 400 155 27 64 chr1 218934185 218934414 -63259250 + (TTATA)n Simple_repeat Simple_repeat 1 220 0 198 0 0 0 chr1 218934425 218934447 -63259217 + (TA)n Simple_repeat Simple_repeat 2 23 0 259 288 37 135 chr1 218934665 218934991 -63258673 - L2 LINE L2 -24 3289 2996 1095 326 46 57 chr1 218935244 218935929 -63257735 - L2 LINE L2 -329 2984 2304 24 32 0 0 chr1 218936299 218936330 -63257334 + AT_rich Low_complexity Low_complexity 1 31 0 2311 168 34 2 chr1 218936596 218937007 -63256657 - MSTB LTR MaLR -2 424 1 244 187 13 27 chr1 218937301 218937376 -63256288 + (TTATA)n Simple_repeat Simple_repeat 1 74 0 1820 112 0 73 chr1 218937464 218937794 -63255870 + AluSx SINE Alu 1 308 0 4906 174 37 25 chr1 218940097 218941445 -63252219 + L1MA8 LINE L1 4910 6290 -1 736 156 19 2 chr1 218942072 218942214 -63251450 + L1M2 LINE L1 5314 5457 -855 260 309 21 11 chr1 218942357 218942451 -63251213 + L2 LINE L2 3192 3286 -27 21 71 0 0 chr1 218942540 218942582 -63251082 + AT_rich Low_complexity Low_complexity 1 42 0 235 88 88 0 chr1 218942725 218942816 -63250848 + (TA)n Simple_repeat Simple_repeat 1 99 0 26 0 0 0 chr1 218942921 218942947 -63250717 + AT_rich Low_complexity Low_complexity 1 26 0 1375 248 82 32 chr1 218943200 218943250 -63250414 - MLT1C LTR MaLR 0 467 421 1768 174 87 53 chr1 218943250 218943664 -63250000 - MSTA LTR MaLR 0 428 1 1375 248 82 32 chr1 218943664 218944053 -63249611 - MLT1C LTR MaLR -46 421 6 311 205 25 19 chr1 218944071 218944082 -63249582 + (TA)n Simple_repeat Simple_repeat 1 10 -152 261 0 0 0 chr1 218944082 218944111 -63249553 + (CA)n Simple_repeat Simple_repeat 2 30 0 311 205 25 19 chr1 218944111 218944260 -63249404 + (TA)n Simple_repeat Simple_repeat 10 162 0 183 42 0 0 chr1 218944396 218944420 -63249244 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1228 108 11 0 chr1 218946659 218946835 -63246829 - AluSc SINE Alu -3 306 129 288 130 0 0 chr1 218947033 218947079 -63246585 + (TA)n Simple_repeat Simple_repeat 1 46 0 1913 191 49 32 chr1 218949158 218949628 -63244036 - L1MA7 LINE L1 -6 6285 5808 258 136 0 0 chr1 218951285 218951329 -63242335 + (TA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr1 218951328 218951349 -63242315 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 351 295 30 55 chr1 218951374 218951835 -63241829 + L1MEd LINE L1 1067 1716 -4548 398 269 101 52 chr1 218951866 218952174 -63241490 + L1MEd LINE L1 1796 2118 -4192 189 0 0 0 chr1 218952728 218952749 -63240915 + (ATG)n Simple_repeat Simple_repeat 3 23 0 21 0 0 0 chr1 218952851 218952872 -63240792 + AT_rich Low_complexity Low_complexity 1 21 0 2557 235 55 41 chr1 218953033 218953905 -63239759 - Charlie1 DNA MER1_type -5 2756 1873 462 345 55 35 chr1 218953922 218954086 -63239578 + L2 LINE L2 2379 2538 -776 1782 130 0 0 chr1 218954086 218954333 -63239331 - AluSx SINE Alu -9 303 57 462 345 55 35 chr1 218954333 218954513 -63239151 + L2 LINE L2 2538 2730 -584 262 280 93 0 chr1 218954622 218954729 -63238935 + LTR41 LTR ERVL 89 205 -568 777 217 23 17 chr1 218954932 218955107 -63238557 + LTR41 LTR ERVL 585 760 -13 333 333 25 0 chr1 218955119 218955239 -63238425 + L2 LINE L2 2787 2909 -405 408 330 57 28 chr1 218955294 218955576 -63238088 + L2 LINE L2 3024 3313 0 554 311 48 24 chr1 218955626 218955877 -63237787 + MIR SINE MIR 3 259 -3 2098 122 0 3 chr1 218956030 218956325 -63237339 + AluSp SINE Alu 1 294 -19 198 143 0 0 chr1 218956508 218956543 -63237121 + (CATA)n Simple_repeat Simple_repeat 2 36 0 1425 208 0 34 chr1 218957306 218957599 -63236065 + AluJo SINE Alu 1 283 -29 720 35 0 0 chr1 218957599 218957686 -63235978 + (CATA)n Simple_repeat Simple_repeat 2 88 0 205 130 0 37 chr1 218958305 218958359 -63235305 + (CATA)n Simple_repeat Simple_repeat 4 55 0 2163 135 25 6 chr1 218958852 218959208 -63234456 + THE1B LTR MaLR 1 363 -1 229 204 0 0 chr1 218959374 218959418 -63234246 + (TG)n Simple_repeat Simple_repeat 2 45 0 1756 164 16 0 chr1 218959618 218959928 -63233736 - L1M3 LINE L1 -517 5817 5503 2168 176 48 7 chr1 218959928 218960387 -63233277 + L1MA10 LINE L1 5854 6332 -2 26 30 0 0 chr1 218961575 218961608 -63232056 + AT_rich Low_complexity Low_complexity 1 33 0 252 233 248 16 chr1 218962639 218962688 -63230976 + L1MA10 LINE L1 6169 6205 -129 234 0 0 0 chr1 218962688 218962714 -63230950 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 233 248 16 chr1 218962714 218962793 -63230871 + L1MA10 LINE L1 6205 6327 -7 1396 166 4 4 chr1 218963133 218963374 -63230290 + AluSq SINE Alu 68 308 -5 345 102 0 34 chr1 218963426 218963485 -63230179 - MLT2D LTR ERVL 0 520 464 201 208 0 21 chr1 218963490 218963538 -63230126 + (TA)n Simple_repeat Simple_repeat 2 48 0 249 33 0 0 chr1 218963538 218963568 -63230096 + (TG)n Simple_repeat Simple_repeat 1 30 0 1186 213 15 92 chr1 218963578 218963967 -63229697 - MLT2D LTR ERVL -55 359 1 229 171 0 0 chr1 218964574 218964615 -63229049 + L1MEc LINE L1 1674 1714 -4682 276 195 46 23 chr1 218964809 218964896 -63228768 - L1MEc LINE L1 -4723 1998 1910 207 188 0 0 chr1 218964896 218964944 -63228720 + (TG)n Simple_repeat Simple_repeat 2 49 0 225 282 52 82 chr1 218965000 218965232 -63228432 - L1MEc LINE L1 -4697 1843 1605 1249 176 246 14 chr1 218965232 218965578 -63228086 + MSTB LTR MaLR 1 426 0 8487 136 38 59 chr1 218965580 218967192 -63226472 + MSTA-int LTR MaLR 3 1580 0 1575 156 203 14 chr1 218967192 218967552 -63226112 + MSTA LTR MaLR 1 428 0 225 282 52 82 chr1 218967552 218967606 -63226058 - L1MEc LINE L1 -4934 1606 1562 27 62 0 0 chr1 218969318 218969366 -63224298 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr1 218970394 218970419 -63223245 + AT_rich Low_complexity Low_complexity 1 25 0 642 282 43 28 chr1 218970720 218970975 -63222689 - MLT1G1 LTR MaLR -336 259 1 687 150 21 50 chr1 218971246 218971386 -63222278 - FRAM SINE Alu -16 160 25 341 109 0 18 chr1 218971455 218971510 -63222154 - MLT2A1 LTR ERVL -1 452 399 231 164 30 15 chr1 218971511 218971578 -63222086 + (TA)n Simple_repeat Simple_repeat 2 69 0 23 78 0 0 chr1 218971584 218971635 -63222029 + AT_rich Low_complexity Low_complexity 1 51 0 2604 88 52 3 chr1 218971752 218972136 -63221528 - MLT2A1 LTR ERVL -40 404 2 2222 109 0 0 chr1 218972329 218972622 -63221042 - AluSc SINE Alu -16 293 1 432 276 53 13 chr1 218973130 218973282 -63220382 - LTR16A LTR ERVL -6 444 287 422 316 65 13 chr1 218973385 218973540 -63220124 - LTR16A LTR ERVL -174 276 114 1793 108 48 0 chr1 218973732 218973983 -63219681 - AluSx SINE Alu -44 268 6 885 173 0 29 chr1 218973984 218974157 -63219507 - FRAM SINE Alu 0 176 9 1692 142 0 0 chr1 218974272 218974554 -63219110 - AluSx SINE Alu 0 319 38 25 0 0 0 chr1 218975575 218975600 -63218064 + AT_rich Low_complexity Low_complexity 1 25 0 248 226 0 32 chr1 218975907 218975969 -63217695 + (TATATG)n Simple_repeat Simple_repeat 6 65 0 657 247 60 11 chr1 218976476 218976658 -63217006 - MIR SINE MIR -4 258 68 255 288 41 0 chr1 218977811 218977884 -63215780 - MIR SINE MIR -66 196 121 2610 257 17 6 chr1 218978161 218978648 -63215016 - MER63C DNA MER1_type -135 925 428 288 0 0 0 chr1 218978648 218978680 -63214984 + (CA)n Simple_repeat Simple_repeat 1 32 0 2610 257 17 6 chr1 218978680 218978849 -63214815 - MER63C DNA MER1_type -632 428 262 966 142 166 0 chr1 218978939 218979150 -63214514 - MER63C DNA MER1_type -684 246 1 1472 263 67 48 chr1 218979370 218979951 -63213713 + MLT1E LTR MaLR 2 593 0 1353 250 90 44 chr1 218980449 218980915 -63212749 - MLT2B1 LTR ERVL -20 534 1 1674 134 16 0 chr1 218981441 218981694 -63211970 - MER7A DNA MER2_type -91 255 1 293 0 27 0 chr1 218981731 218981768 -63211896 + (TA)n Simple_repeat Simple_repeat 1 38 0 1499 164 79 21 chr1 218983151 218983431 -63210233 - AluJo SINE Alu -16 296 1 534 276 117 9 chr1 218983729 218983943 -63209721 - MIR SINE MIR 0 262 26 184 365 93 0 chr1 218984564 218984671 -63208993 - L2 LINE L2 0 3272 3156 32 26 0 0 chr1 218984705 218984744 -63208920 + AT_rich Low_complexity Low_complexity 1 39 0 1974 123 32 0 chr1 218984744 218985028 -63208636 + AluSg SINE Alu 1 293 -17 385 258 172 0 chr1 218985099 218985250 -63208414 + MIR SINE MIR 85 261 -1 276 30 0 0 chr1 218986036 218986069 -63207595 + (TG)n Simple_repeat Simple_repeat 2 34 0 221 165 24 24 chr1 218986345 218986430 -63207234 + (TA)n Simple_repeat Simple_repeat 1 85 0 701 282 12 6 chr1 218986884 218987054 -63206610 - MER76 LTR ERV -517 171 1 1967 267 36 19 chr1 218987054 218988337 -63205327 + L1M4 LINE L1 3307 4699 -1447 221 153 0 17 chr1 218988379 218988438 -63205226 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 513 221 40 40 chr1 218988458 218988607 -63205057 - MLT1A1 LTR MaLR -11 363 215 1030 244 16 16 chr1 218988622 218988876 -63204788 - MLT1A1 LTR MaLR -111 254 1 22 0 0 0 chr1 218988998 218989020 -63204644 + AT_rich Low_complexity Low_complexity 1 22 0 25 59 0 29 chr1 218989051 218989067 -63204597 + AT_rich Low_complexity Low_complexity 1 16 -50 2066 132 14 22 chr1 218989067 218989430 -63204234 + L1PA16 LINE L1 5802 6161 -5 25 59 0 29 chr1 218989430 218989481 -63204183 + AT_rich Low_complexity Low_complexity 16 66 0 2081 72 20 7 chr1 218989542 218989991 -63203673 - L1P3 LINE L1 -636 5536 5084 2925 85 0 0 chr1 218989991 218990390 -63203274 + L1PA8 LINE L1 5772 6170 -2 22 35 0 0 chr1 218992266 218992295 -63201369 + AT_rich Low_complexity Low_complexity 1 29 0 4037 78 11 7 chr1 218993035 218993609 -63200055 + L1PA8 LINE L1 5593 6168 -4 27 0 0 0 chr1 218996294 218996321 -63197343 + AT_rich Low_complexity Low_complexity 1 27 0 914 195 54 0 chr1 218996663 218996848 -63196816 - L1PB4 LINE L1 -141 6015 5821 2179 122 3 0 chr1 218996939 218997251 -63196413 - AluSq SINE Alu 0 313 1 23 33 0 0 chr1 218997642 218997672 -63195992 + AT_rich Low_complexity Low_complexity 1 30 0 566 305 47 42 chr1 218997752 218997988 -63195676 - MIR SINE MIR -1 261 25 46 62 0 0 chr1 218998535 218998616 -63195048 + AT_rich Low_complexity Low_complexity 1 81 0 1185 228 63 0 chr1 218998660 218998928 -63194736 + L1MC1 LINE L1 6048 6332 -1 263 326 124 0 chr1 218999139 218999228 -63194436 + L2 LINE L2 3208 3307 -6 997 231 80 40 chr1 218999298 218999671 -63193993 + MLT1B LTR MaLR 3 390 0 2946 237 21 7 chr1 218999672 219000393 -63193271 + MLT1B-int LTR MaLR 2 732 -639 273 179 18 0 chr1 219000529 219000585 -63193079 + MLT1B-int LTR MaLR 698 754 -981 524 334 87 68 chr1 219000674 219001475 -63192189 - L1MEd LINE L1 -4826 1303 494 22 88 0 0 chr1 219001659 219001716 -63191948 + AT_rich Low_complexity Low_complexity 1 57 0 3437 168 19 16 chr1 219003187 219003871 -63189793 - L1MB2 LINE L1 -17 6154 5469 25 51 0 0 chr1 219003964 219004003 -63189661 + AT_rich Low_complexity Low_complexity 1 39 0 1507 196 35 78 chr1 219005206 219005639 -63188025 + MLT2D LTR ERVL 1 414 0 1969 122 37 69 chr1 219005643 219005695 -63187969 - THE1B LTR MaLR 0 364 312 2127 124 0 3 chr1 219005695 219005994 -63187670 - AluSg1 SINE Alu -11 298 1 1969 122 37 69 chr1 219005994 219006317 -63187347 - THE1B LTR MaLR -52 312 1 226 161 0 36 chr1 219006701 219006757 -63186907 + LTR66 LTR ERVL 385 438 -172 * 269 138 17 17 chr1 219006719 219006777 -63186887 - LTR66 LTR ERVL -172 438 381 273 58 87 0 chr1 219006805 219006874 -63186790 + (TA)n Simple_repeat Simple_repeat 1 75 0 409 203 0 0 chr1 219006874 219006948 -63186716 - FRAM SINE Alu -31 145 72 638 73 57 0 chr1 219008161 219008284 -63185380 + (TA)n Simple_repeat Simple_repeat 1 130 0 201 74 0 0 chr1 219008283 219008310 -63185354 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 423 292 195 11 chr1 219008512 219008697 -63184967 - MIR SINE MIR -31 231 13 3045 100 23 5 chr1 219008794 219009235 -63184429 + MLT2A2 LTR ERVL 5 453 0 772 354 21 53 chr1 219010014 219010699 -63182965 + L2 LINE L2 2527 3187 -126 1286 206 111 3 chr1 219011199 219011505 -63182159 - MER44D DNA MER2_type 0 609 1 249 309 25 0 chr1 219011967 219012048 -63181616 + MIR SINE MIR 59 141 -121 243 200 38 12 chr1 219012117 219012197 -63181467 + (TA)n Simple_repeat Simple_repeat 1 82 0 2211 171 50 11 chr1 219012315 219012777 -63180887 + L1MC2 LINE L1 5854 6333 -11 1836 195 31 10 chr1 219013151 219013535 -63180129 - MSTD LTR MaLR -4 392 1 195 100 0 0 chr1 219014218 219014248 -63179416 + (TG)n Simple_repeat Simple_repeat 2 31 0 26 50 0 0 chr1 219015106 219015146 -63178518 + AT_rich Low_complexity Low_complexity 1 40 0 3590 113 73 24 chr1 219015401 219016479 -63177185 - MER11A LTR ERVK 0 1236 1 2024 124 14 0 chr1 219016741 219017031 -63176633 - AluY SINE Alu -17 294 1 1179 299 99 20 chr1 219017162 219018090 -63175574 + L1ME3A LINE L1 4310 5310 -836 215 125 25 0 chr1 219018180 219018220 -63175444 + (TA)n Simple_repeat Simple_repeat 2 42 0 1154 266 127 49 chr1 219018220 219018402 -63175262 + L1ME3A LINE L1 5360 5526 -644 1938 147 23 0 chr1 219018402 219018702 -63174962 - AluSx SINE Alu -5 307 1 1154 266 127 49 chr1 219018702 219019236 -63174428 + L1ME3A LINE L1 5526 6132 -38 307 301 11 0 chr1 219019708 219019801 -63173863 - MER63A DNA MER1_type 0 210 117 207 0 0 0 chr1 219020992 219021015 -63172649 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 0 198 0 0 0 chr1 219021178 219021200 -63172464 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3624 62 2 8 chr1 219021225 219021695 -63171969 + L1PA4 LINE L1 5666 6132 -23 2040 145 0 6 chr1 219022179 219022490 -63171174 + AluSc SINE Alu 1 309 0 406 283 154 34 chr1 219022886 219023328 -63170336 + L1M4 LINE L1 2813 3307 -2839 35 41 0 0 chr1 219023748 219023797 -63169867 + AT_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chr1 219024036 219024058 -63169606 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 982 206 43 106 chr1 219024107 219024475 -63169189 + MER2 DNA MER2_type 1 345 0 564 42 0 0 chr1 219024482 219024553 -63169111 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 1291 305 91 29 chr1 219025144 219025826 -63167838 + L2 LINE L2 1492 2215 -1099 29 0 0 0 chr1 219025918 219025947 -63167717 + AT_rich Low_complexity Low_complexity 1 29 0 33 66 0 0 chr1 219027330 219027391 -63166273 + AT_rich Low_complexity Low_complexity 1 61 0 393 313 143 22 chr1 219027658 219027882 -63165782 + MIR SINE MIR 2 252 -10 1793 279 45 20 chr1 219028256 219028840 -63164824 + LTR68 LTR ERV1 1 598 -142 440 242 161 7 chr1 219029169 219029318 -63164346 - MLT1F1 LTR MaLR -27 540 369 1927 212 66 26 chr1 219029867 219030396 -63163268 + MER44D DNA MER2_type 1 605 0 24 0 0 0 chr1 219030828 219030852 -63162812 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 219031828 219031850 -63161814 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 219032282 219032311 -63161353 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 219032965 219032987 -63160677 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr1 219033189 219033248 -63160416 + AT_rich Low_complexity Low_complexity 1 59 0 1591 196 119 26 chr1 219033701 219034159 -63159505 + LTR10A LTR ERV1 1 548 -61 32 67 0 0 chr1 219034414 219034474 -63159190 + AT_rich Low_complexity Low_complexity 1 60 0 459 154 0 0 chr1 219034618 219034696 -63158968 + L1MA3 LINE L1 5864 5941 -364 2208 105 19 0 chr1 219034729 219035053 -63158611 - L1PA10 LINE L1 -5 6163 5834 2164 78 7 48 chr1 219036627 219036936 -63156728 - AluY SINE Alu -15 296 1 228 266 62 71 chr1 219037548 219037661 -63156003 + L2 LINE L2 719 830 -2484 465 114 127 0 chr1 219037676 219037755 -63155909 - 5S rRNA rRNA -31 90 2 543 345 113 72 chr1 219037763 219039447 -63154217 + L2 LINE L2 967 2719 -595 3215 180 20 2 chr1 219039979 219040569 -63153095 + Tigger1 DNA MER2_type 1 601 -1817 363 154 0 31 chr1 219040594 219040659 -63153005 - THE1C LTR MaLR -312 63 1 2652 164 12 18 chr1 219040661 219041167 -63152497 + L1PA16 LINE L1 5664 6166 0 36 70 0 0 chr1 219041375 219041446 -63152218 + AT_rich Low_complexity Low_complexity 1 71 0 24 32 0 0 chr1 219041471 219041502 -63152162 + AT_rich Low_complexity Low_complexity 1 31 0 646 274 113 0 chr1 219041520 219041706 -63151958 - MER20 DNA MER1_type -12 207 1 327 324 55 41 chr1 219041728 219041873 -63151791 + MIR3 SINE MIR 40 186 -22 263 120 0 20 chr1 219041941 219041991 -63151673 + (TA)n Simple_repeat Simple_repeat 1 49 0 1599 198 18 18 chr1 219042025 219042354 -63151310 - MER47A DNA MER2_type -36 330 2 24 32 0 0 chr1 219042514 219042545 -63151119 + AT_rich Low_complexity Low_complexity 1 31 0 404 370 5 28 chr1 219043123 219043334 -63150330 + MIR SINE MIR 52 257 -5 458 249 138 22 chr1 219043389 219043570 -63150094 + MIR SINE MIR 61 262 0 485 310 183 0 chr1 219043702 219043970 -63149694 + L2 LINE L2 2997 3313 0 1040 168 89 89 chr1 219044086 219044377 -63149287 - AluJo SINE Alu -9 293 3 22 35 0 0 chr1 219045230 219045259 -63148405 + AT_rich Low_complexity Low_complexity 1 29 0 28 79 0 0 chr1 219046306 219046369 -63147295 + AT_rich Low_complexity Low_complexity 1 63 0 609 130 0 0 chr1 219046370 219046462 -63147202 + FLAM_C SINE Alu 36 127 -16 22 94 0 0 chr1 219046462 219046526 -63147138 + AT_rich Low_complexity Low_complexity 1 64 0 1544 249 117 25 chr1 219048362 219048952 -63144712 + LTR48B LTR ERV1 1 644 0 2498 167 20 18 chr1 219049498 219049825 -63143839 + L1M4c LINE L1 18 348 -6036 2522 42 7 0 chr1 219049825 219050132 -63143532 - AluY SINE Alu -1 310 2 2498 167 20 18 chr1 219050132 219050254 -63143410 + L1M4c LINE L1 348 468 -5916 1436 237 81 2 chr1 219050394 219050804 -63142860 + L1ME1 LINE L1 5448 5889 -277 225 0 0 0 chr1 219054786 219054811 -63138853 + (CA)n Simple_repeat Simple_repeat 2 26 0 1667 203 41 35 chr1 219055163 219055497 -63138167 + MSTD LTR MaLR 1 339 -57 198 0 0 0 chr1 219055497 219055519 -63138145 + (TA)n Simple_repeat Simple_repeat 2 23 0 1667 203 41 35 chr1 219055519 219055578 -63138086 + MSTD LTR MaLR 339 396 0 24 53 0 0 chr1 219055806 219055844 -63137820 + AT_rich Low_complexity Low_complexity 1 38 0 325 321 64 37 chr1 219056017 219056204 -63137460 + L1M4c LINE L1 1267 1458 -4914 522 312 75 59 chr1 219056620 219057008 -63136656 + MLT1L LTR MaLR 1 394 -221 563 135 23 10 chr1 219057774 219057888 -63135776 - LTR56 LTR ERV1 -23 422 320 2303 111 11 35 chr1 219057896 219058273 -63135391 - L1PB1 LINE L1 -1 6150 5783 521 75 8 50 chr1 219058274 219058394 -63135270 + (TA)n Simple_repeat Simple_repeat 2 116 0 4116 187 6 2 chr1 219058399 219059794 -63133870 - L1PB1 LINE L1 -360 5791 4393 269 214 9 0 chr1 219060061 219060121 -63133543 - MLT1F LTR MaLR -16 526 470 331 302 10 10 chr1 219060312 219060408 -63133256 - MLT1H LTR MaLR -393 156 61 342 317 42 0 chr1 219060458 219060578 -63133086 + L1M4 LINE L1 4502 4626 -1520 1284 237 46 3 chr1 219060827 219061131 -63132533 + MLT1-int LTR MaLR 608 924 -447 288 77 0 0 chr1 219061572 219061611 -63132053 + (TTATA)n Simple_repeat Simple_repeat 3 41 0 261 283 214 23 chr1 219061637 219061810 -63131854 + MIR SINE MIR 2 207 -55 25 31 0 0 chr1 219063177 219063209 -63130455 + AT_rich Low_complexity Low_complexity 1 32 0 1079 233 44 12 chr1 219063652 219063901 -63129763 + MER76 LTR ERV 1 257 -431 889 189 66 10 chr1 219063901 219064097 -63129567 + MSTA LTR MaLR 1 207 -221 * 1661 148 57 13 chr1 219064079 219064377 -63129287 + MSTA LTR MaLR 118 428 0 757 256 12 54 chr1 219064377 219064619 -63129045 + MER76 LTR ERV 253 484 -204 394 188 0 25 chr1 219064688 219064768 -63128896 + MER76 LTR ERV 611 688 0 416 281 172 15 chr1 219064854 219065057 -63128607 - LTR33 LTR ERVL -167 354 120 225 342 114 9 chr1 219065523 219065637 -63128027 + L2 LINE L2 2936 3061 -211 928 66 0 0 chr1 219065888 219066009 -63127655 - AluY SINE Alu -16 295 175 34 42 0 0 chr1 219067745 219067793 -63125871 + AT_rich Low_complexity Low_complexity 1 48 0 980 168 0 10 chr1 219067858 219068061 -63125603 + AluSg/x SINE Alu 112 312 0 414 156 59 104 chr1 219068063 219068198 -63125466 + AluSp SINE Alu 138 266 -47 551 188 26 0 chr1 219068198 219068315 -63125349 - AluSq/x SINE Alu -192 120 1 2258 37 0 0 chr1 219068323 219068592 -63125072 - AluY SINE Alu -4 307 39 315 238 113 0 chr1 219068599 219068679 -63124985 - MER2 DNA MER2_type -256 89 1 1385 186 7 0 chr1 219068702 219069006 -63124658 + AluSx SINE Alu 2 307 0 29 28 0 0 chr1 219069474 219069510 -63124154 + AT_rich Low_complexity Low_complexity 1 36 0 1104 118 49 0 chr1 219069544 219069747 -63123917 + L1MA7 LINE L1 6077 6289 -2 25 0 0 0 chr1 219070148 219070173 -63123491 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 219070286 219070308 -63123356 + AT_rich Low_complexity Low_complexity 1 22 0 383 215 0 9 chr1 219070737 219070844 -63122820 + CT-rich Low_complexity Low_complexity 3 108 0 27 0 0 0 chr1 219071288 219071315 -63122349 + AT_rich Low_complexity Low_complexity 1 27 0 324 306 206 9 chr1 219071315 219071534 -63122130 - L1ME3A LINE L1 -263 5907 5646 237 265 59 0 chr1 219071776 219071844 -63121820 - L1ME3A LINE L1 -724 5460 5389 2102 105 36 10 chr1 219072126 219072431 -63121233 + AluSp SINE Alu 1 313 0 304 290 76 45 chr1 219072447 219072822 -63120842 - L1ME3A LINE L1 -1089 5057 4673 220 279 76 0 chr1 219073595 219073674 -63119990 - L2 LINE L2 0 3272 3188 1906 105 0 0 chr1 219074240 219074508 -63119156 + AluSc SINE Alu 32 299 0 226 167 33 0 chr1 219074994 219075054 -63118610 + GA-rich Low_complexity Low_complexity 3 64 0 402 57 0 0 chr1 219075277 219075330 -63118334 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 419 0 0 chr1 219075689 219075775 -63117889 + L2 LINE L2 3184 3269 -3 21 57 0 0 chr1 219075784 219075819 -63117845 + AT_rich Low_complexity Low_complexity 1 35 0 227 214 18 0 chr1 219076501 219076557 -63117107 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 31 68 0 0 chr1 219076813 219076872 -63116792 + AT_rich Low_complexity Low_complexity 1 59 0 1754 174 40 3 chr1 219076882 219077210 -63116454 - MER2 DNA MER2_type -4 340 1 23 97 0 0 chr1 219077360 219077432 -63116232 + AT_rich Low_complexity Low_complexity 1 72 0 1632 192 32 8 chr1 219077529 219077882 -63115782 + MER47B DNA MER2_type 11 418 0 2455 44 0 41 chr1 219078935 219079255 -63114409 + AluY SINE Alu 1 307 -4 1846 142 7 108 chr1 219079291 219079707 -63113957 + Tigger2a DNA MER2_type 1 374 -60 2241 303 67 11 chr1 219079716 219080450 -63113214 + L1PA16 LINE L1 2 776 -6011 13391 229 25 22 chr1 219080508 219081567 -63112097 + L1PA16 LINE L1 1319 2374 -4443 333 0 0 0 chr1 219081567 219081604 -63112060 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 13391 229 25 22 chr1 219081604 219085994 -63107670 + L1PA16 LINE L1 2374 6817 0 342 105 18 0 chr1 219086174 219086231 -63107433 + L1PA16 LINE L1 6102 6159 -7 358 228 25 0 chr1 219086231 219086310 -63107354 + Tigger2a DNA MER2_type 354 434 0 740 292 32 80 chr1 219086331 219086708 -63106956 - MER92A LTR ERV1 -53 359 1 2341 245 36 29 chr1 219086709 219087459 -63106205 + L1MC4a LINE L1 6548 7287 -521 26 0 0 0 chr1 219087651 219087677 -63105987 + AT_rich Low_complexity Low_complexity 1 26 0 352 177 19 57 chr1 219088222 219088367 -63105297 - AluSp/q SINE Alu -2 301 232 797 139 4 30 chr1 219088576 219088603 -63105061 + L1P1 LINE L1 5698 5724 -397 500 0 0 16 chr1 219088603 219088667 -63104997 - L1PA3 LINE L1 -1 6154 6092 797 139 4 30 chr1 219088667 219088772 -63104892 + L1P1 LINE L1 5724 5823 -298 1508 108 5 5 chr1 219089036 219089259 -63104405 - pTR5 LTR ERV1 -2046 392 170 275 245 41 31 chr1 219089260 219089358 -63104306 - LTR30 LTR ERV1 -80 642 544 4234 134 61 75 chr1 219089362 219090361 -63103303 - pTR5 LTR ERV1 -417 2021 744 22 56 0 0 chr1 219091520 219091556 -63102108 + AT_rich Low_complexity Low_complexity 1 36 0 746 264 28 5 chr1 219091660 219091872 -63101792 + MER20 DNA MER1_type 2 218 -1 2047 143 34 6 chr1 219092527 219092878 -63100786 + MER46B DNA MER2_type 1 236 0 2398 75 3 0 chr1 219093025 219093320 -63100344 - AluY SINE Alu -15 296 1 2513 65 30 12 chr1 219093419 219093758 -63099906 + MER4E LTR ERV1 1 345 -421 825 110 0 0 chr1 219093758 219093867 -63099797 + AluSg/x SINE Alu 176 284 -26 3179 79 2 5 chr1 219093884 219094302 -63099362 + MER4E LTR ERV1 350 766 0 247 336 129 14 chr1 219094339 219094479 -63099185 - MIR SINE MIR -59 203 48 626 288 38 20 chr1 219094764 219095068 -63098596 - MER110A LTR ERV1 -2 466 170 319 200 62 0 chr1 219095142 219095222 -63098442 - MER110A LTR ERV1 -303 165 81 7029 60 0 6 chr1 219095627 219097205 -63096459 - L1PA7 LINE L1 -3 6151 4578 1822 192 25 51 chr1 219097206 219097345 -63096319 - L1M1 LINE L1 -743 6822 6681 1791 127 0 0 chr1 219097345 219097590 -63096074 - AluSg SINE Alu -63 247 3 1822 192 25 51 chr1 219097590 219098011 -63095653 - L1M1 LINE L1 -884 6681 6325 7896 186 32 21 chr1 219098018 219100659 -63093005 - L1PA14 LINE L1 -4 6157 3488 919 196 20 60 chr1 219100662 219100912 -63092752 - L1M1 LINE L1 -1242 6323 6084 * 3533 247 53 16 chr1 219100903 219101881 -63091783 - L1M1 LINE L1 -6551 1014 1 1152 294 75 6 chr1 219101882 219102376 -63091288 + L1MC4 LINE L1 7378 7905 -137 30 0 0 0 chr1 219103002 219103032 -63090632 + AT_rich Low_complexity Low_complexity 1 30 0 1982 136 3 0 chr1 219103970 219104256 -63089408 + AluSx SINE Alu 10 296 -16 190 283 75 0 chr1 219104752 219104805 -63088859 + MIR SINE MIR 120 176 -86 853 298 90 43 chr1 219105320 219105834 -63087830 + MLT1H LTR MaLR 7 549 0 227 331 107 57 chr1 219107036 219107297 -63086367 + L3 LINE CR1 1095 1374 -203 2314 95 0 0 chr1 219107297 219107591 -63086073 - AluY SINE Alu -17 294 1 227 331 107 57 chr1 219107591 219107628 -63086036 + L3 LINE CR1 1374 1408 -169 489 274 6 24 chr1 219108938 219109106 -63084558 - MER117 DNA MER1_type -24 173 9 273 269 77 10 chr1 219109517 219109621 -63084043 - L2 LINE L2 -78 3235 3125 541 288 47 18 chr1 219110293 219110463 -63083201 + MER58A DNA MER1_type 1 175 -49 827 244 49 10 chr1 219110551 219110756 -63082908 + MER58A DNA MER1_type 1 213 -11 1460 135 31 5 chr1 219111060 219111329 -63082335 - L1MA7 LINE L1 -34 6272 5988 213 240 151 56 chr1 219111739 219111918 -63081746 - L2 LINE L2 0 3313 3118 21 0 0 0 chr1 219112160 219112181 -63081483 + AT_rich Low_complexity Low_complexity 1 21 0 1251 366 99 35 chr1 219112246 219113174 -63080490 - L2 LINE L2 -10 3303 2242 1568 235 25 3 chr1 219113174 219113531 -63080133 - MLT1A1 LTR MaLR 0 365 1 1251 366 99 35 chr1 219113531 219114032 -63079632 - L2 LINE L2 -1071 2242 1774 252 191 0 0 chr1 219115352 219115394 -63078270 - LTR40a LTR ERVL 0 519 478 293 205 12 72 chr1 219115587 219115670 -63077994 + LTR68 LTR ERV1 218 295 -445 834 242 56 20 chr1 219115682 219115934 -63077730 + LTR68 LTR ERV1 480 740 0 27 29 0 0 chr1 219116016 219116050 -63077614 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr1 219116158 219116193 -63077471 + AT_rich Low_complexity Low_complexity 1 35 0 213 197 40 0 chr1 219116320 219116396 -63077268 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 0 0 0 chr1 219116530 219116552 -63077112 + AT_rich Low_complexity Low_complexity 1 22 0 249 176 120 56 chr1 219117553 219117695 -63075969 + MER69 DNA AcHobo 2298 2448 -78 337 337 88 36 chr1 219117791 219118040 -63075624 - L1ME LINE L1 -382 5739 5478 3203 21 3 0 chr1 219118755 219119131 -63074533 + L1PA4 LINE L1 5777 6153 -2 414 0 0 0 chr1 219119638 219119684 -63073980 + (CA)n Simple_repeat Simple_repeat 1 46 0 729 96 0 0 chr1 219120259 219120384 -63073280 + (TA)n Simple_repeat Simple_repeat 1 125 0 273 264 14 14 chr1 219120425 219120497 -63073167 + L2 LINE L2 3242 3313 0 1974 240 29 56 chr1 219120687 219120771 -63072893 - L1MCb LINE L1 -2906 3658 3573 4134 155 15 7 chr1 219120771 219121502 -63072162 - L1PA13 LINE L1 -8 6155 5419 1974 240 29 56 chr1 219121502 219122428 -63071236 - L1MCb LINE L1 -2991 3573 2676 3365 242 79 49 chr1 219122447 219125031 -63068633 - L1MCb LINE L1 -3818 2746 1 21 71 0 0 chr1 219125574 219125616 -63068048 + AT_rich Low_complexity Low_complexity 1 42 0 44055 39 1 0 chr1 219126301 219132451 -63061213 + L1PA3 LINE L1 1 6155 0 3457 127 67 63 chr1 219133700 219134415 -63059249 - LTR1 LTR ERV1 -67 718 1 305 328 48 0 chr1 219134687 219134812 -63058852 - MIR SINE MIR -14 248 118 1769 185 73 10 chr1 219134845 219135465 -63058199 + MER67C LTR ERV1 1 709 -1 409 141 0 0 chr1 219135637 219135701 -63057963 + MER92C LTR ERV1 489 552 -2 1578 175 46 88 chr1 219135967 219136443 -63057221 - MER89 LTR ERV1 0 559 1 2019 100 45 3 chr1 219137026 219137315 -63056349 - AluSc SINE Alu -8 301 1 190 370 59 25 chr1 219137960 219138079 -63055585 + L2 LINE L2 3145 3267 -5 30 27 0 0 chr1 219139363 219139400 -63054264 + AT_rich Low_complexity Low_complexity 1 37 0 4789 215 36 31 chr1 219139954 219142017 -63051647 + L1MC2 LINE L1 4265 6335 -9 22 0 0 0 chr1 219142768 219142790 -63050874 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr1 219143203 219143245 -63050419 + AT_rich Low_complexity Low_complexity 1 42 0 714 197 0 0 chr1 219143348 219143470 -63050194 + MSTB LTR MaLR 305 426 0 2907 240 82 46 chr1 219143621 219145400 -63048264 + L1MDb LINE L1 771 2634 -3772 188 343 20 10 chr1 219145596 219145698 -63047966 + L2 LINE L2 2703 2805 -509 455 316 70 12 chr1 219145752 219145923 -63047741 + L2 LINE L2 3115 3295 -18 250 264 0 0 chr1 219146614 219146667 -63046997 + L2 LINE L2 3219 3271 -1 242 290 50 30 chr1 219146776 219146876 -63046788 + MLT1K LTR MaLR 141 242 -346 268 281 132 16 chr1 219149485 219149606 -63044058 - MIR SINE MIR -2 260 126 266 200 0 0 chr1 219149611 219149656 -63044008 - 5S rRNA rRNA -76 45 1 4262 102 21 0 chr1 219149657 219150267 -63043397 + L1PA11 LINE L1 5544 6166 -8 2324 295 111 25 chr1 219150565 219151579 -63042085 + ERVL LTR ERVL 3129 4229 -1535 1560 279 59 36 chr1 219151664 219152226 -63041438 + ERVL LTR ERVL 4356 4930 -834 236 130 22 0 chr1 219152346 219152392 -63041272 + GA-rich Low_complexity Low_complexity 4 50 0 22 35 0 0 chr1 219152801 219152830 -63040834 + AT_rich Low_complexity Low_complexity 1 29 0 269 336 61 61 chr1 219152870 219153009 -63040655 - L2 LINE L2 -1343 1971 1830 2067 81 92 0 chr1 219153009 219153292 -63040372 + AluY SINE Alu 1 309 -2 269 336 61 61 chr1 219153292 219153366 -63040298 - L2 LINE L2 -1483 1831 1758 1437 224 73 28 chr1 219153366 219153790 -63039874 - MSTB2 LTR MaLR 0 457 15 214 261 0 58 chr1 219153793 219153862 -63039802 - L2 LINE L2 -1552 1762 1698 760 251 22 22 chr1 219155272 219155455 -63038209 - MER5A DNA MER1_type -6 183 1 338 340 111 20 chr1 219155903 219156147 -63037517 + L1ME LINE L1 5313 5578 -584 294 153 12 47 chr1 219156166 219156251 -63037413 - L1MC/D LINE L1 -886 5473 5392 193 318 57 0 chr1 219156574 219156662 -63037002 - MIR SINE MIR -9 253 161 565 287 66 16 chr1 219156674 219156918 -63036746 - MIR SINE MIR -3 259 4 444 273 41 67 chr1 219157063 219157257 -63036407 - MIR SINE MIR 0 262 74 449 326 116 49 chr1 219157529 219157873 -63035791 - L2 LINE L2 0 3313 2947 300 27 0 0 chr1 219158724 219158761 -63034903 + (CA)n Simple_repeat Simple_repeat 2 38 0 2241 119 0 0 chr1 219159425 219159735 -63033929 - AluSg SINE Alu 0 310 1 355 300 19 110 chr1 219159797 219159893 -63033771 - L2 LINE L2 -11 3302 3199 1899 185 11 19 chr1 219159893 219160271 -63033393 + THE1C LTR MaLR 1 375 0 355 300 19 110 chr1 219160271 219160366 -63033298 - L2 LINE L2 -114 3199 3147 401 298 48 18 chr1 219160366 219160534 -63033130 - MER69A DNA AcHobo 0 177 5 355 300 19 110 chr1 219160534 219160651 -63033013 - L2 LINE L2 -166 3147 3021 1271 306 38 113 chr1 219160675 219161607 -63032057 - L2 LINE L2 -2375 939 78 1577 176 49 9 chr1 219163382 219163706 -63029958 + MER44D DNA MER2_type 1 607 -2 304 237 10 52 chr1 219163939 219164036 -63029628 - LTR65 LTR ERV1 -109 560 468 444 319 21 0 chr1 219164555 219164699 -63028965 - MIR SINE MIR -37 225 79 5054 175 25 31 chr1 219165261 219166382 -63027282 - L1PA15 LINE L1 0 6816 5689 2115 114 10 10 chr1 219166382 219166690 -63026974 - AluSp SINE Alu -3 310 3 5054 175 25 31 chr1 219166690 219166937 -63026727 - L1PA15 LINE L1 -1127 5689 5442 198 0 0 0 chr1 219166937 219166959 -63026705 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 5054 175 25 31 chr1 219166959 219167292 -63026372 - L1PA15 LINE L1 -1374 5442 5131 3538 259 20 4 chr1 219167292 219168308 -63025356 - L1PA15 LINE L1 -2260 4537 3506 290 258 11 34 chr1 219168328 219168417 -63025247 - L1PA15 LINE L1 -6700 87 1 456 239 0 9 chr1 219168477 219168586 -63025078 + L1 LINE L1 2946 3053 -3093 333 68 0 0 chr1 219168722 219168766 -63024898 + (TA)n Simple_repeat Simple_repeat 1 44 0 29 47 0 0 chr1 219168890 219168933 -63024731 + AT_rich Low_complexity Low_complexity 1 43 0 25 83 0 0 chr1 219169280 219169340 -63024324 + AT_rich Low_complexity Low_complexity 1 60 0 266 283 0 116 chr1 219169343 219169481 -63024183 - L2 LINE L2 -8 3305 3184 255 277 12 0 chr1 219169483 219169566 -63024098 + (TATG)n Simple_repeat Simple_repeat 4 87 0 240 315 0 0 chr1 219169682 219169771 -63023893 + L1ME LINE L1 5688 5776 -345 276 196 0 0 chr1 219170125 219170171 -63023493 - MSTA LTR MaLR 0 428 383 2069 109 37 3 chr1 219170173 219170467 -63023197 + AluSp SINE Alu 4 307 -6 638 84 0 11 chr1 219170467 219170562 -63023102 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 1911 159 81 16 chr1 219170562 219170934 -63022730 - MSTA LTR MaLR -27 401 6 326 287 0 103 chr1 219171028 219171095 -63022569 - L2 LINE L2 -733 2581 2509 704 314 5 9 chr1 219171095 219171318 -63022346 + MER58A DNA MER1_type 2 223 -1 326 287 0 103 chr1 219171318 219171445 -63022219 - L2 LINE L2 -805 2509 2407 2317 69 0 0 chr1 219173495 219173784 -63019880 + AluY SINE Alu 1 289 -22 958 240 123 27 chr1 219174207 219174540 -63019124 - MLT1A1 LTR MaLR 0 365 1 226 308 58 8 chr1 219174685 219174805 -63018859 + MIR SINE MIR 132 257 -5 22 80 0 0 chr1 219175214 219175264 -63018400 + AT_rich Low_complexity Low_complexity 1 50 0 301 338 53 53 chr1 219175454 219175682 -63017982 - L1M4c LINE L1 -4891 1493 1266 1398 236 83 80 chr1 219175703 219176314 -63017350 + MLT1E2 LTR MaLR 14 626 0 1736 259 46 59 chr1 219176314 219176990 -63016674 + MLT1E2-int LTR MaLR 1 667 -704 307 309 32 27 chr1 219177111 219177299 -63016365 + MLT1E2-int LTR MaLR 696 884 -487 1765 201 8 12 chr1 219178006 219178405 -63015259 - L1MB4 LINE L1 -2 6989 6593 291 79 0 0 chr1 219178566 219178604 -63015060 - L1PA16 LINE L1 -9 6157 6120 1693 199 24 43 chr1 219178622 219179044 -63014620 - L1MB4 LINE L1 -410 6581 6168 1144 171 0 19 chr1 219179267 219179483 -63014181 - L1PA16 LINE L1 -9 6157 5946 3454 258 55 30 chr1 219179496 219180905 -63012759 - L1MB4 LINE L1 -791 6166 4723 241 294 87 0 chr1 219180937 219181029 -63012635 - L1MB4 LINE L1 -3361 3596 3497 346 292 28 49 chr1 219181098 219181242 -63012422 - L1MB4 LINE L1 -5507 1352 1212 230 308 62 112 chr1 219181313 219181687 -63011977 - L1MB4 LINE L1 -5671 1184 830 414 321 27 11 chr1 219181827 219182014 -63011650 - L1MB4 LINE L1 -6559 300 111 2133 116 3 3 chr1 219182018 219182329 -63011335 - AluSq SINE Alu -2 311 1 2049 100 31 0 chr1 219182885 219183176 -63010488 + AluSc SINE Alu 6 305 -4 233 315 23 39 chr1 219183329 219183459 -63010205 - Charlie8 DNA MER1_type -2190 227 100 271 333 0 0 chr1 219183870 219183945 -63009719 - L2 LINE L2 -12 3260 3186 6607 99 1 1 chr1 219184725 219185681 -63007983 - L1P LINE L1 -789 5357 4402 1534 98 0 18 chr1 219185681 219185905 -63007759 + L1PA8 LINE L1 5935 6155 -17 195 100 0 0 chr1 219188710 219188740 -63004924 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 31 51 0 39 chr1 219188759 219188837 -63004827 + AT_rich Low_complexity Low_complexity 1 75 0 26 64 0 0 chr1 219189047 219189094 -63004570 + AT_rich Low_complexity Low_complexity 1 47 0 411 73 0 0 chr1 219189654 219189709 -63003955 + (TG)n Simple_repeat Simple_repeat 2 56 0 325 133 0 27 chr1 219189709 219189778 -63003886 + (TA)n Simple_repeat Simple_repeat 1 67 0 332 236 22 22 chr1 219189781 219189870 -63003794 - L1MC4 LINE L1 -1340 6702 6614 * 336 253 11 11 chr1 219189804 219189891 -63003773 + L1MC4 LINE L1 6614 6700 -1342 431 147 0 49 chr1 219189894 219190037 -63003627 + (TA)n Simple_repeat Simple_repeat 1 136 0 23 33 0 0 chr1 219190075 219190105 -63003559 + AT_rich Low_complexity Low_complexity 1 30 0 477 323 57 39 chr1 219190109 219190443 -63003221 - L1ME1 LINE L1 -27 6139 5800 354 264 39 0 chr1 219190447 219190576 -63003088 - L1MCa LINE L1 -5047 1379 1246 1126 327 60 49 chr1 219190603 219191604 -63002060 - HERV16 LTR ERVL -2285 2711 1674 338 181 0 69 chr1 219192014 219192086 -63001578 + MLT1C LTR MaLR 317 460 -7 1239 217 13 23 chr1 219194961 219195260 -62998404 - AluJo SINE Alu -16 296 1 511 278 84 26 chr1 219195532 219195723 -62997941 + MIR SINE MIR 3 204 -58 236 200 17 0 chr1 219195724 219195784 -62997880 + (TA)n Simple_repeat Simple_repeat 2 62 0 1984 142 0 7 chr1 219195867 219196163 -62997501 - AluSx SINE Alu -18 294 1 901 307 41 43 chr1 219196221 219196684 -62996980 + L1M4 LINE L1 16 477 -6065 2272 289 29 30 chr1 219196721 219198110 -62995554 + L1PA12 LINE L1 2 1927 -4860 * 7815 232 27 29 chr1 219198109 219198803 -62994861 + L1PA12 LINE L1 3174 3868 -2948 1987 133 0 3 chr1 219198803 219199104 -62994560 + AluSg SINE Alu 1 300 -10 2303 66 21 0 chr1 219199106 219199392 -62994272 + AluY SINE Alu 12 303 -8 7815 232 27 29 chr1 219199392 219201609 -62992055 + L1PA12 LINE L1 3869 6082 -734 1445 122 4 0 chr1 219201603 219201833 -62991831 + L1P LINE L1 2753 2983 -3163 * 2388 62 0 13 chr1 219201873 219202178 -62991486 - AluY SINE Alu -10 301 1 252 0 0 0 chr1 219202190 219202218 -62991446 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2156 80 14 0 chr1 219202233 219202509 -62991155 - AluSp SINE Alu -33 280 1 550 42 14 0 chr1 219202509 219202580 -62991084 - L1PA12 LINE L1 -567 6258 6187 1938 148 9 3 chr1 219202583 219202901 -62990763 + L1PA12 LINE L1 6258 6577 -242 24 67 0 0 chr1 219202941 219202986 -62990678 + AT_rich Low_complexity Low_complexity 1 45 0 31 44 0 0 chr1 219203075 219203120 -62990544 + AT_rich Low_complexity Low_complexity 1 45 0 1291 250 103 24 chr1 219203172 219203640 -62990024 - MLT1D LTR MaLR 0 505 1 24 85 0 0 chr1 219203728 219203787 -62989877 + AT_rich Low_complexity Low_complexity 1 59 0 2736 192 75 2 chr1 219203877 219204267 -62989397 - MER6A DNA MER2_type -261 604 159 189 0 0 0 chr1 219204267 219204288 -62989376 + (CTCA)n Simple_repeat Simple_repeat 1 21 0 2736 192 75 2 chr1 219204288 219204459 -62989205 - MER6A DNA MER2_type -706 159 2 185 396 43 24 chr1 219204582 219204746 -62988918 + L2 LINE L2 2869 3035 -237 578 322 5 23 chr1 219204864 219205078 -62988586 + MIR SINE MIR 53 262 0 1089 81 46 23 chr1 219205190 219205364 -62988300 - MER75B DNA T2_type 0 243 66 324 68 0 0 chr1 219205340 219205384 -62988280 + MER75B DNA T2_type 29 72 -171 * 351 96 0 0 chr1 219205383 219205435 -62988229 + MER75B DNA T2_type 21 72 -171 305 167 0 0 chr1 219205490 219205544 -62988120 - MER75B DNA T2_type -189 54 1 180 143 0 0 chr1 219206751 219206779 -62986885 - L2 LINE L2 -15 3298 3271 2210 275 16 12 chr1 219207142 219207937 -62985727 - L1PA15-16 LINE L1 -3702 3147 2342 2308 206 7 7 chr1 219207948 219208360 -62985304 - MSTB LTR MaLR -14 412 1 1109 232 59 29 chr1 219208361 219208736 -62984928 - L1PA15-16 LINE L1 -4506 2343 1958 22 0 0 0 chr1 219209445 219209467 -62984197 + AT_rich Low_complexity Low_complexity 1 22 0 326 273 23 11 chr1 219209688 219209776 -62983888 - L2 LINE L2 0 3272 3184 503 261 29 14 chr1 219210175 219210313 -62983351 - L2 LINE L2 0 3313 3174 22 70 0 0 chr1 219211116 219211159 -62982505 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr1 219213316 219213345 -62980319 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr1 219213887 219213912 -62979752 + (T)n Simple_repeat Simple_repeat 1 25 0 378 0 0 0 chr1 219214786 219214828 -62978836 + (TA)n Simple_repeat Simple_repeat 1 42 0 4787 166 36 25 chr1 219214828 219216350 -62977314 - L1MA8 LINE L1 -76 7634 6093 1178 212 31 3 chr1 219216357 219216645 -62977019 - L1MA8 LINE L1 -1771 5794 5499 1388 227 14 6 chr1 219216770 219217136 -62976528 - L1MA8 LINE L1 -2451 5114 4746 740 220 67 118 chr1 219217130 219217217 -62976447 - L1MA8 LINE L1 -3942 3623 3533 * 1559 205 3 24 chr1 219217217 219217505 -62976159 - AluJo SINE Alu -30 282 1 740 220 67 118 chr1 219217505 219217867 -62975797 - L1MA8 LINE L1 -4032 3533 3197 361 279 143 7 chr1 219217888 219218035 -62975629 + MIR SINE MIR 47 213 -49 373 297 73 46 chr1 219218104 219218323 -62975341 + L2 LINE L2 3088 3312 -1 36 62 0 0 chr1 219218769 219218833 -62974831 + AT_rich Low_complexity Low_complexity 1 64 0 38 61 0 0 chr1 219219726 219219792 -62973872 + AT_rich Low_complexity Low_complexity 1 66 0 2053 116 3 10 chr1 219219800 219220136 -62973528 + AluSq SINE Alu 1 313 0 254 250 13 13 chr1 219221289 219221365 -62972299 + MIR SINE MIR 185 260 -2 315 239 94 14 chr1 219221940 219222078 -62971586 + L1M4 LINE L1 4617 4765 -1381 1804 268 59 26 chr1 219222080 219222624 -62971040 + MER77 LTR ERV1 41 602 -3 630 230 21 31 chr1 219222719 219222910 -62970754 - MER3 DNA MER1_type -19 190 2 1415 281 52 35 chr1 219223188 219223849 -62969815 - LTR68 LTR ERV1 -11 729 1 444 311 14 34 chr1 219223912 219224060 -62969604 - MIR SINE MIR -113 149 5 2180 203 34 11 chr1 219224870 219225347 -62968317 - LTR45B LTR ERV1 0 489 2 375 296 6 6 chr1 219225905 219226145 -62967519 + (TA)n Simple_repeat Simple_repeat 1 240 0 21 0 0 0 chr1 219226351 219226372 -62967292 + AT_rich Low_complexity Low_complexity 1 21 0 4207 193 17 11 chr1 219226372 219227338 -62966326 - L1PB4 LINE L1 -9 6849 5878 1051 81 5 38 chr1 219227341 219227527 -62966137 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2630 84 14 3 chr1 219227532 219227887 -62965777 - L1PA10 LINE L1 -22 6146 5788 307 50 0 0 chr1 219227882 219227922 -62965742 + L1PA10 LINE L1 5730 5769 -399 * 7939 233 44 20 chr1 219227920 219230198 -62963466 - L1PB4 LINE L1 -1130 5718 3386 1006 154 0 34 chr1 219230224 219230399 -62963265 - AluSg/x SINE Alu -9 301 133 274 238 0 0 chr1 219230420 219230483 -62963181 - L1PB4 LINE L1 -3544 3304 3242 603 333 77 21 chr1 219230585 219231053 -62962611 - L1PB4 LINE L1 -5269 1579 994 628 259 113 79 chr1 219231250 219231423 -62962241 - L1PB4 LINE L1 -5780 1069 882 180 0 0 0 chr1 219231423 219231443 -62962221 + (GACTG)n Simple_repeat Simple_repeat 4 23 0 628 259 113 79 chr1 219231443 219231535 -62962129 - L1PB4 LINE L1 -5967 882 795 23 54 0 0 chr1 219232368 219232405 -62961259 + AT_rich Low_complexity Low_complexity 1 37 0 202 273 0 0 chr1 219233201 219233256 -62960408 + CT-rich Low_complexity Low_complexity 1 55 0 491 310 35 20 chr1 219233338 219233535 -62960129 + MIR SINE MIR 53 252 -10 238 327 214 33 chr1 219233638 219234283 -62959381 + L2 LINE L2 2215 2982 -290 3748 9 0 0 chr1 219234592 219235018 -62958646 + L1PA2 LINE L1 5730 6155 0 23 0 0 0 chr1 219235136 219235159 -62958505 + AT_rich Low_complexity Low_complexity 1 23 0 1863 134 0 55 chr1 219235409 219235716 -62957948 + AluSx SINE Alu 5 294 -18 397 313 42 14 chr1 219239025 219239169 -62954495 + MLT2E LTR ERVL 45 192 -436 962 299 46 46 chr1 219239605 219240084 -62953580 - ERVL LTR ERVL -3195 2569 2091 2270 84 0 0 chr1 219240323 219240620 -62953044 + AluY SINE Alu 1 297 -14 198 143 0 0 chr1 219240728 219240763 -62952901 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr1 219240827 219240864 -62952800 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 219241361 219241391 -62952273 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr1 219241408 219241459 -62952205 + AT_rich Low_complexity Low_complexity 1 51 0 2025 253 60 30 chr1 219241584 219242252 -62951412 - MER76 LTR ERV 0 688 1 388 212 0 0 chr1 219242273 219242358 -62951306 + L1M4 LINE L1 3894 3978 -2168 405 351 47 77 chr1 219242369 219242904 -62950760 + L1ME LINE L1 182 700 -5696 866 266 128 29 chr1 219242924 219243695 -62949969 + L1ME LINE L1 4731 5588 -647 759 314 84 41 chr1 219243709 219244196 -62949468 + ERVL LTR ERVL 1432 1939 -3825 348 155 0 0 chr1 219244228 219244299 -62949365 + (CA)n Simple_repeat Simple_repeat 1 71 0 204 279 32 19 chr1 219244299 219244457 -62949207 + (TA)n Simple_repeat Simple_repeat 1 160 0 844 299 46 24 chr1 219244493 219245026 -62948638 + ERVL LTR ERVL 3116 3653 -2001 1253 265 49 14 chr1 219245059 219245425 -62948239 - MER74A LTR ERVL -31 527 149 338 311 66 18 chr1 219245662 219245829 -62947835 + ERVL LTR ERVL 3709 3883 -1771 496 300 45 25 chr1 219245847 219246174 -62947490 + ERVL LTR ERVL 3862 4218 -1436 504 258 163 82 chr1 219246176 219246642 -62947022 - MLT1H LTR MaLR -2 547 44 620 301 94 11 chr1 219246703 219247025 -62946639 + ERVL LTR ERVL 4236 4576 -909 207 286 18 0 chr1 219247501 219247557 -62946107 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1119 348 39 41 chr1 219247558 219247654 -62946010 + ERVL LTR ERVL 4234 4329 -1435 308 83 21 0 chr1 219247654 219247702 -62945962 + (TG)n Simple_repeat Simple_repeat 2 50 0 1119 348 39 41 chr1 219247702 219248426 -62945238 + ERVL LTR ERVL 4329 5052 -712 374 246 91 91 chr1 219248804 219248991 -62944673 - L2 LINE L2 -9 3304 3118 333 355 103 6 chr1 219249958 219250039 -62943625 + L1 LINE L1 2521 2593 -3553 3528 70 0 4 chr1 219250039 219250498 -62943166 + L1PA7 LINE L1 5695 6151 -3 333 355 103 6 chr1 219250498 219250737 -62942927 + L1 LINE L1 2593 2872 -3274 247 333 22 0 chr1 219250758 219250893 -62942771 + L1 LINE L1 2892 3029 -3117 2547 207 73 2 chr1 219250997 219251519 -62942145 + Tigger7 DNA MER2_type 8 566 -1921 1533 109 16 28 chr1 219251520 219251904 -62941760 + Tigger7 DNA MER2_type 2162 2587 0 2355 61 0 35 chr1 219252039 219252350 -62941314 + AluY SINE Alu 1 300 -11 30 0 0 0 chr1 219252541 219252571 -62941093 + AT_rich Low_complexity Low_complexity 1 30 0 870 357 24 13 chr1 219252597 219252894 -62940770 - L2 LINE L2 -352 2962 2659 2197 119 87 0 chr1 219252894 219253229 -62940435 + THE1B LTR MaLR 1 364 0 870 357 24 13 chr1 219253229 219253309 -62940355 - L2 LINE L2 -655 2659 2581 375 246 32 0 chr1 219253338 219253442 -62940222 - MER5A DNA MER1_type -80 109 4 317 311 20 53 chr1 219253540 219253691 -62939973 - L1M4 LINE L1 -3339 2807 2662 1496 180 60 14 chr1 219253906 219254189 -62939475 - AluJb SINE Alu -11 301 6 34 42 0 0 chr1 219254965 219255013 -62938651 + AT_rich Low_complexity Low_complexity 1 48 0 284 261 14 58 chr1 219255212 219255350 -62938314 + L1ME2 LINE L1 5930 6061 -103 3650 168 37 5 chr1 219255632 219256575 -62937089 + L1PA16 LINE L1 4929 5897 -269 229 111 22 0 chr1 219256776 219256821 -62936843 + L1ME3 LINE L1 6115 6160 -2 3906 215 45 4 chr1 219257111 219258046 -62935618 + L1 LINE L1 3545 4517 -1629 586 246 55 82 chr1 219258077 219258517 -62935147 - L1MEc LINE L1 -2436 3779 3352 325 211 33 0 chr1 219258622 219258712 -62934952 - L1MEc LINE L1 -2869 3346 3254 247 293 89 0 chr1 219258807 219258930 -62934734 - L1MEc LINE L1 -5215 1181 1048 382 295 84 20 chr1 219258965 219259216 -62934448 - L1M4 LINE L1 -1397 4749 4483 282 143 0 0 chr1 219259488 219259537 -62934127 + (CA)n Simple_repeat Simple_repeat 2 50 0 316 263 127 82 chr1 219259553 219260002 -62933662 - L1MEc LINE L1 -4656 1740 1272 31 44 0 0 chr1 219260708 219260753 -62932911 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr1 219261534 219261555 -62932109 + AT_rich Low_complexity Low_complexity 1 21 0 532 77 26 0 chr1 219263099 219263177 -62930487 + MADE1 DNA Mariner 1 80 0 1606 176 11 0 chr1 219263303 219263587 -62930077 - AluSx SINE Alu -15 297 11 22 0 0 0 chr1 219263706 219263728 -62929936 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr1 219264278 219264303 -62929361 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr1 219264317 219264338 -62929326 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 219264746 219264768 -62928896 + AT_rich Low_complexity Low_complexity 1 22 0 216 309 88 0 chr1 219265155 219265223 -62928441 + MER91 DNA MER1_type 42 115 -81 25 0 0 0 chr1 219265701 219265726 -62927938 + AT_rich Low_complexity Low_complexity 1 25 0 1811 155 3 0 chr1 219266057 219266367 -62927297 - AluSq SINE Alu 0 311 1 23 0 0 0 chr1 219266787 219266810 -62926854 + AT_rich Low_complexity Low_complexity 1 23 0 3715 120 27 16 chr1 219267195 219267820 -62925844 + L1MA3 LINE L1 5672 6303 -2 277 336 53 0 chr1 219267916 219268047 -62925617 + L1ME LINE L1 5529 5666 -498 994 243 49 4 chr1 219268063 219268289 -62925375 + MLT1G LTR MaLR 330 565 -25 2054 130 0 0 chr1 219268824 219269117 -62924547 - AluSg SINE Alu -17 293 1 906 219 0 16 chr1 219270796 219270988 -62922676 - MER5A DNA MER1_type 0 189 1 666 258 50 0 chr1 219271807 219271966 -62921698 - MER5A DNA MER1_type -22 167 1 474 343 0 0 chr1 219271967 219272107 -62921557 + MLT1J LTR MaLR 207 346 -165 254 133 59 0 chr1 219272303 219272371 -62921293 - L1MA5A LINE L1 0 6297 6221 1139 205 15 105 chr1 219272510 219272842 -62920822 - AluJb SINE Alu 0 302 1 250 278 46 120 chr1 219273004 219273112 -62920552 + MIR SINE MIR 36 135 -73 211 333 11 0 chr1 219273219 219273306 -62920358 + MIR SINE MIR 175 262 0 23 33 0 0 chr1 219273334 219273364 -62920300 + AT_rich Low_complexity Low_complexity 1 30 0 1511 135 31 0 chr1 219273381 219273640 -62920024 - L1PA13 LINE L1 -3 6160 5894 6603 213 19 26 chr1 219273641 219274172 -62919492 - L1PA12 LINE L1 -2683 4901 4368 2155 123 0 0 chr1 219274172 219274474 -62919190 - AluSg SINE Alu -8 302 1 6603 213 19 26 chr1 219274474 219275596 -62918068 - L1PA12 LINE L1 -3216 4368 3260 1542 156 63 42 chr1 219275596 219275929 -62917735 - THE1C LTR MaLR 0 375 36 1287 119 10 5 chr1 219275942 219276143 -62917521 - THE1C-int LTR MaLR -4 1576 1375 2403 84 23 124 chr1 219276155 219276597 -62917067 - THE1C-int LTR MaLR -1183 397 1 1890 142 44 25 chr1 219276599 219276965 -62916699 - THE1C LTR MaLR -2 373 1 3007 192 69 2 chr1 219276967 219277748 -62915916 - L1PA12 LINE L1 -4322 3262 2435 1213 277 46 50 chr1 219277771 219278273 -62915391 - L1PA12 LINE L1 -5641 1940 1441 836 154 93 60 chr1 219279463 219279645 -62914019 - Tigger4(Zombi) DNA MER2_type -5 2726 2539 329 290 69 27 chr1 219279821 219280088 -62913576 - L1ME LINE L1 -336 5785 5511 1031 193 80 0 chr1 219280098 219280311 -62913353 + LTR32 LTR ERVL 15 244 -227 1380 212 109 14 chr1 219280351 219280710 -62912954 + MSTA LTR MaLR 36 428 0 545 215 19 0 chr1 219280711 219280818 -62912846 + LTR32 LTR ERVL 241 349 -122 618 232 0 58 chr1 219280830 219280985 -62912679 + LTR32 LTR ERVL 326 471 0 316 286 29 7 chr1 219281014 219281154 -62912510 - L1ME LINE L1 -2336 5472 5330 420 293 115 48 chr1 219281223 219281554 -62912110 - L1ME LINE L1 -917 5229 4877 221 244 0 0 chr1 219281744 219281789 -62911875 + (CA)n Simple_repeat Simple_repeat 2 46 0 2507 261 55 7 chr1 219282695 219283532 -62910132 - L1ME LINE L1 -2486 3660 2784 420 253 12 6 chr1 219284134 219284296 -62909368 + CT-rich Low_complexity Low_complexity 3 165 0 693 391 23 0 chr1 219286569 219286830 -62906834 + L2 LINE L2 1110 1376 -1938 258 188 0 47 chr1 219286908 219286993 -62906671 - L1PA16 LINE L1 -6 6160 6080 6851 216 20 12 chr1 219287071 219289548 -62904116 - L1PB4 LINE L1 -91 6122 3632 4665 249 25 14 chr1 219289568 219291108 -62902556 - L1PB4 LINE L1 -3850 2353 713 696 313 69 21 chr1 219292421 219292712 -62900952 + L2 LINE L2 1903 2207 -1107 1015 263 115 13 chr1 219292728 219293040 -62900624 + MLT1A2 LTR MaLR 29 372 -2 393 324 48 65 chr1 219293043 219293379 -62900285 + L2 LINE L2 2982 3311 -2 4310 195 2 9 chr1 219293998 219294868 -62898796 - L1PA15 LINE L1 -1657 4489 3626 3982 158 26 44 chr1 219294877 219295901 -62897763 + L1PA15 LINE L1 4497 5498 -676 2682 158 29 43 chr1 219295902 219295984 -62897680 + L1PA15 LINE L1 5585 5667 -498 1791 164 0 17 chr1 219295984 219296277 -62897387 + AluJb SINE Alu 1 288 -24 375 78 0 0 chr1 219296277 219296328 -62897336 + (TA)n Simple_repeat Simple_repeat 1 51 0 2682 158 29 43 chr1 219296328 219296738 -62896926 + L1PA15 LINE L1 5666 6072 -93 1941 77 4 0 chr1 219296738 219297031 -62896633 + AluY SINE Alu 21 314 0 2682 158 29 43 chr1 219297031 219297122 -62896542 + L1PA15 LINE L1 6072 6163 -2 1000 208 27 18 chr1 219297481 219297702 -62895962 - L1MC1 LINE L1 -6 6607 6385 345 309 7 15 chr1 219297705 219297841 -62895823 - L1M4 LINE L1 -1690 4456 4322 4082 235 38 11 chr1 219297844 219298555 -62895109 - L1MC1 LINE L1 -238 6375 5685 773 172 22 0 chr1 219298555 219298689 -62894975 - L1PA15 LINE L1 -18 6147 6011 4082 235 38 11 chr1 219298689 219299877 -62893787 - L1MC1 LINE L1 -928 5685 4424 1066 235 50 63 chr1 219299877 219300529 -62893135 - LTR19C LTR ERV1 0 779 1 2767 263 25 7 chr1 219300529 219301393 -62892271 - L1MC1 LINE L1 -1999 4427 3548 2744 263 22 17 chr1 219301408 219301654 -62892010 - L1MC1 LINE L1 -2994 3432 3189 2145 113 0 10 chr1 219301654 219301954 -62891710 + AluSg SINE Alu 1 297 -13 2744 263 22 17 chr1 219301954 219302873 -62890791 - L1MC1 LINE L1 -3237 3189 2257 272 310 49 72 chr1 219302975 219303323 -62890341 + MLT1I LTR MaLR 49 388 -21 914 251 0 0 chr1 219303538 219303721 -62889943 - MER58A DNA MER1_type 0 224 42 1348 228 28 16 chr1 219303945 219304296 -62889368 - MLT1A1 LTR MaLR -4 463 5 335 314 19 0 chr1 219305037 219305142 -62888522 + MLT1I LTR MaLR 101 207 -202 2210 53 0 0 chr1 219305726 219305992 -62887672 + AluY SINE Alu 1 266 -45 376 50 0 0 chr1 219305994 219306053 -62887611 + AluY SINE Alu 252 302 -6 230 276 134 8 chr1 219306637 219306764 -62886900 + L1ME3A LINE L1 4087 4229 -1917 1247 121 0 0 chr1 219306946 219307119 -62886545 + AluSp SINE Alu 141 313 0 454 302 92 32 chr1 219307119 219307881 -62885783 + L1ME3A LINE L1 4426 5283 -863 538 297 143 70 chr1 219307893 219307957 -62885707 - MLT1H LTR MaLR 0 595 537 2540 50 0 0 chr1 219307957 219308259 -62885405 - AluY SINE Alu -9 302 1 538 297 143 70 chr1 219308259 219308452 -62885212 - MLT1H LTR MaLR -58 537 359 1687 96 24 0 chr1 219308452 219308702 -62884962 - L1PA14 LINE L1 0 6161 5906 538 297 143 70 chr1 219308702 219308996 -62884668 - MLT1H LTR MaLR -236 359 3 990 280 40 53 chr1 219308998 219309482 -62884182 + L1ME3A LINE L1 5305 5794 -376 1054 231 81 75 chr1 219309482 219309854 -62883810 - MLT1A2 LTR MaLR 0 374 1 990 280 40 53 chr1 219309854 219310015 -62883649 + L1ME3A LINE L1 5794 5956 -214 1417 244 104 46 chr1 219310370 219310870 -62882794 - MLT1F LTR MaLR -8 534 6 195 282 70 14 chr1 219312527 219312598 -62881066 - L2 LINE L2 -1 3312 3238 619 289 16 16 chr1 219315804 219315998 -62877666 + MIR SINE MIR 67 260 -2 627 258 82 11 chr1 219316427 219316609 -62877055 + MIR SINE MIR 3 197 -65 240 163 0 0 chr1 219316794 219316837 -62876827 + (TA)n Simple_repeat Simple_repeat 2 44 0 55 0 0 0 chr1 219317054 219317109 -62876555 + AT_rich Low_complexity Low_complexity 1 55 0 616 328 51 0 chr1 219317253 219317448 -62876216 + L2 LINE L2 1362 1566 -1748 1251 341 80 9 chr1 219317458 219318121 -62875543 + L2 LINE L2 1862 2571 -743 465 337 62 18 chr1 219318238 219318511 -62875153 + L2 LINE L2 3015 3299 -14 21 36 0 0 chr1 219318620 219318648 -62875016 + AT_rich Low_complexity Low_complexity 1 28 0 1791 198 50 40 chr1 219318897 219319321 -62874343 - MSTC LTR MaLR 0 428 1 23 54 0 0 chr1 219319573 219319610 -62874054 + AT_rich Low_complexity Low_complexity 1 37 0 1303 213 102 9 chr1 219320030 219320364 -62873300 - MLT1A1 LTR MaLR 0 365 1 416 316 73 27 chr1 219320399 219320764 -62872900 - L2 LINE L2 -4 3309 2858 395 329 117 25 chr1 219320780 219321172 -62872492 - L1MEc LINE L1 -4256 2465 2038 1793 172 25 11 chr1 219322240 219322595 -62871069 + L1PB4 LINE L1 5792 6151 -5 2333 56 0 3 chr1 219322709 219323029 -62870635 + AluY SINE Alu 1 319 0 21 0 0 0 chr1 219323187 219323208 -62870456 + AT_rich Low_complexity Low_complexity 1 21 0 1406 250 178 60 chr1 219323989 219324884 -62868780 - L1MC4 LINE L1 -2 8040 7041 555 283 34 11 chr1 219324887 219325064 -62868600 - L1MC4 LINE L1 -1063 6979 6799 24 0 0 0 chr1 219325168 219325192 -62868472 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr1 219325236 219325269 -62868395 + AT_rich Low_complexity Low_complexity 1 33 0 798 295 34 4 chr1 219327740 219327977 -62865687 - L1MEc LINE L1 -5484 1056 813 27 0 0 0 chr1 219328729 219328756 -62864908 + AT_rich Low_complexity Low_complexity 1 27 0 219 364 25 68 chr1 219329277 219329439 -62864225 - L2 LINE L2 -194 3078 2924 22 0 0 0 chr1 219330518 219330540 -62863124 + AT_rich Low_complexity Low_complexity 1 22 0 295 256 207 39 chr1 219331095 219331484 -62862180 + MLT1H LTR MaLR 1 538 -11 268 264 99 0 chr1 219331749 219331870 -62861794 + L1MC4a LINE L1 6037 6169 -1639 504 259 28 69 chr1 219332273 219332520 -62861144 + L1MC5 LINE L1 6636 6872 -1089 1952 219 64 83 chr1 219332674 219333267 -62860397 - MLT1E LTR MaLR -2 591 10 443 266 54 16 chr1 219333272 219333456 -62860208 + L1MC5 LINE L1 6997 7187 -774 369 264 85 27 chr1 219333732 219333990 -62859674 + L1MC5 LINE L1 7542 7814 -147 2014 207 72 0 chr1 219334099 219334504 -62859160 + Tigger7 DNA MER2_type 1 434 -299 425 190 101 0 chr1 219334494 219334573 -62859091 + Tigger7 DNA MER2_type 2387 2473 -14 * 29 60 0 0 chr1 219334582 219334632 -62859032 + AT_rich Low_complexity Low_complexity 1 50 0 455 267 64 11 chr1 219334678 219334865 -62858799 - Charlie2a DNA MER1_type -955 1907 1711 542 273 26 48 chr1 219334892 219335119 -62858545 - L1ME2 LINE L1 -9 6155 5934 504 242 30 0 chr1 219335170 219335302 -62858362 + MER97b DNA MER1_type? 47 182 -871 526 253 63 16 chr1 219335399 219335589 -62858075 - L1ME2 LINE L1 -283 5881 5683 1340 252 79 49 chr1 219335601 219336549 -62857115 - L1ME2 LINE L1 -552 5612 4639 2041 257 49 0 chr1 219336691 219337302 -62856362 + L1 LINE L1 4094 4734 -1412 714 315 29 52 chr1 219337411 219337757 -62855907 + LTR16C LTR ERVL 154 491 0 227 208 0 104 chr1 219338758 219338854 -62854810 - L1MC4 LINE L1 -1339 6703 6618 2584 43 0 0 chr1 219339618 219339920 -62853744 - AluY SINE Alu -9 302 1 344 306 47 57 chr1 219340047 219340240 -62853424 - L1ME3A LINE L1 -313 5857 5667 2437 142 9 33 chr1 219340332 219340755 -62852909 + MER4A LTR ERV1 252 664 0 23 97 0 0 chr1 219342100 219342172 -62851492 + AT_rich Low_complexity Low_complexity 1 72 0 27 0 0 0 chr1 219343875 219343902 -62849762 + AT_rich Low_complexity Low_complexity 1 27 0 10180 197 39 17 chr1 219345091 219346939 -62846725 - L1MA3 LINE L1 0 7724 5918 1891 156 51 23 chr1 219346939 219347291 -62846373 - THE1B LTR MaLR -2 362 1 11063 113 4 0 chr1 219347291 219348865 -62844799 - THE1B-int LTR MaLR 0 1580 1 1936 136 60 26 chr1 219348865 219349217 -62844447 - THE1B LTR MaLR 0 364 1 10180 197 39 17 chr1 219349217 219350888 -62842776 - L1MA3 LINE L1 -1805 5919 4134 7657 222 34 15 chr1 219350881 219353250 -62840414 - L1MA3 LINE L1 -4471 3094 16 * 286 302 10 21 chr1 219353857 219353953 -62839711 - L2 LINE L2 -7 3306 3212 2059 218 46 11 chr1 219354413 219354868 -62838796 - MER70A LTR ERVL -1 471 1 2090 114 0 19 chr1 219355533 219355841 -62837823 - AluSx SINE Alu -10 302 1 182 241 76 51 chr1 219355888 219355967 -62837697 + L3 LINE CR1 696 776 -801 6578 148 38 12 chr1 219356575 219358425 -62835239 - L1MA3 LINE L1 0 6305 4387 204 40 0 0 chr1 219358425 219358450 -62835214 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 6578 148 38 12 chr1 219358450 219358603 -62835061 - L1MA3 LINE L1 -1918 4387 4240 23 0 0 0 chr1 219358876 219358899 -62834765 + AT_rich Low_complexity Low_complexity 1 23 0 384 371 108 26 chr1 219359189 219359662 -62834002 - L1ME LINE L1 -389 5781 5268 25 65 0 0 chr1 219359663 219359709 -62833955 + AT_rich Low_complexity Low_complexity 1 46 0 287 246 0 33 chr1 219359861 219359922 -62833742 - L2 LINE L2 -1 3312 3254 429 36 0 0 chr1 219362655 219362710 -62830954 + (T)n Simple_repeat Simple_repeat 1 55 0 256 288 124 8 chr1 219363880 219364053 -62829611 - L1ME LINE L1 -1310 4836 4644 472 319 66 22 chr1 219364563 219364836 -62828828 - L1ME3 LINE L1 -235 5935 5651 681 244 0 0 chr1 219364838 219364973 -62828691 + MER5A DNA MER1_type 1 135 -54 21 36 0 0 chr1 219366640 219366668 -62826996 + AT_rich Low_complexity Low_complexity 1 28 0 566 250 12 41 chr1 219367475 219367594 -62826070 + MLT1F1 LTR MaLR 7 121 -446 2156 127 0 0 chr1 219367594 219367894 -62825770 + AluSx SINE Alu 1 300 -12 566 250 12 41 chr1 219367894 219367946 -62825718 + MLT1F1 LTR MaLR 121 173 -394 718 200 27 49 chr1 219367947 219368132 -62825532 - FRAM SINE Alu 0 176 1 3362 144 9 18 chr1 219368132 219368700 -62824964 + L1PB4 LINE L1 5556 6118 -38 42 0 0 0 chr1 219368704 219368746 -62824918 + AT_rich Low_complexity Low_complexity 1 42 0 353 291 275 12 chr1 219368748 219369006 -62824658 + MLT1F1 LTR MaLR 157 482 -60 455 359 86 5 chr1 219369785 219370005 -62823659 - MIR SINE MIR -13 249 12 22 70 0 0 chr1 219370696 219370739 -62822925 + AT_rich Low_complexity Low_complexity 1 43 0 371 221 52 7 chr1 219371074 219371210 -62822454 + CT-rich Low_complexity Low_complexity 1 142 0 5064 179 29 14 chr1 219372211 219373289 -62820375 - L1MA4 LINE L1 -9 6291 5200 23 0 0 0 chr1 219374155 219374178 -62819486 + AT_rich Low_complexity Low_complexity 1 23 0 1127 282 63 32 chr1 219374820 219375344 -62818320 - MLT1F LTR MaLR 0 542 3 274 231 14 88 chr1 219375359 219375421 -62818243 + MIR3 SINE MIR 100 150 -58 514 295 62 24 chr1 219375421 219375631 -62818033 - MER58A DNA MER1_type -3 221 4 274 231 14 88 chr1 219375631 219375682 -62817982 + MIR3 SINE MIR 150 203 -5 1457 225 33 50 chr1 219375783 219376179 -62817485 + MLT1B LTR MaLR 1 389 -1 826 305 139 37 chr1 219376202 219376793 -62816871 + L2 LINE L2 1652 2302 -1012 1743 156 33 16 chr1 219376816 219377123 -62816541 + MER1B DNA MER1_type 28 339 0 2369 160 70 0 chr1 219377304 219377747 -62815917 + MER101 LTR ERV1 1 474 0 457 208 21 28 chr1 219378102 219378246 -62815418 - MER63 DNA MER1_type -815 246 104 746 352 103 2 chr1 219378302 219378739 -62814925 + L2 LINE L2 2451 2931 -383 1234 227 84 0 chr1 219378783 219378937 -62814727 - AluJo SINE Alu -5 297 157 273 38 19 38 chr1 219378937 219378990 -62814674 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 1234 227 84 0 chr1 219378990 219379108 -62814556 - AluJo SINE Alu -145 157 2 14434 182 17 10 chr1 219379251 219384145 -62809519 + L1PB1 LINE L1 1362 6505 -362 217 182 36 0 chr1 219384147 219384202 -62809462 + (ATATG)n Simple_repeat Simple_repeat 2 58 0 2306 131 11 0 chr1 219384203 219384561 -62809103 + L1PB1 LINE L1 6498 6859 -8 21 0 0 0 chr1 219384566 219384587 -62809077 + AT_rich Low_complexity Low_complexity 1 21 0 253 326 41 0 chr1 219384587 219384615 -62809049 + L2 LINE L2 3193 3218 -95 285 75 0 0 chr1 219384615 219384655 -62809009 + (TG)n Simple_repeat Simple_repeat 2 41 0 253 326 41 0 chr1 219384655 219384724 -62808940 + L2 LINE L2 3218 3294 -19 230 385 7 7 chr1 219384722 219384870 -62808794 + L2 LINE L2 3162 3309 -4 * 1228 271 67 25 chr1 219385115 219385518 -62808146 + MER77 LTR ERV1 176 595 -10 726 238 43 4 chr1 219385854 219386089 -62807575 + L1M4 LINE L1 4431 4674 -1472 272 305 168 0 chr1 219386149 219386280 -62807384 + MER58B DNA MER1_type 189 341 0 929 222 22 0 chr1 219386386 219386571 -62807093 - MER20 DNA MER1_type -27 192 4 470 269 81 46 chr1 219386582 219386865 -62806799 + L1M4 LINE L1 4751 5043 -1103 683 270 69 33 chr1 219386893 219387286 -62806378 + L1ME1 LINE L1 4925 5331 -815 2336 263 50 9 chr1 219387313 219388076 -62805588 + L1ME1 LINE L1 5366 6159 -7 29 47 0 0 chr1 219388403 219388446 -62805218 + AT_rich Low_complexity Low_complexity 1 43 0 270 352 144 22 chr1 219388673 219389130 -62804534 - L2 LINE L2 -511 2803 2291 192 77 0 0 chr1 219389310 219389336 -62804328 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2167 106 0 0 chr1 219389340 219389623 -62804041 - AluSq SINE Alu -30 283 1 787 189 111 16 chr1 219390755 219390945 -62802719 - MER3 DNA MER1_type 0 209 2 395 280 128 37 chr1 219391195 219391802 -62801862 - L1MEd LINE L1 -4697 1434 895 360 179 0 186 chr1 219391845 219391985 -62801679 - L1ME2 LINE L1 -9 6155 6042 433 200 91 0 chr1 219391997 219392107 -62801557 - L1MEc LINE L1 -4324 2072 1953 307 226 177 16 chr1 219392626 219392750 -62800914 + MIR SINE MIR 117 260 -2 2157 124 0 3 chr1 219393122 219393429 -62800235 + AluSq SINE Alu 2 307 -6 339 305 77 40 chr1 219394123 219394506 -62799158 - MLT1L LTR MaLR -13 602 140 1651 92 0 9 chr1 219394579 219394808 -62798856 + AluSg/x SINE Alu 71 297 -12 22 56 0 0 chr1 219396397 219396433 -62797231 + AT_rich Low_complexity Low_complexity 1 36 0 1639 210 64 25 chr1 219396636 219397041 -62796623 - LTR27 LTR ERV1 0 636 216 216 291 13 13 chr1 219397572 219397651 -62796013 + CT-rich Low_complexity Low_complexity 4 82 0 3361 248 143 20 chr1 219398028 219399262 -62794402 + L2 LINE L2 514 1899 -1415 532 317 72 10 chr1 219399440 219399648 -62794016 - HAL1 LINE L1 -1788 719 499 2069 111 3 7 chr1 219399664 219399961 -62793703 + AluSx SINE Alu 1 296 -16 829 182 88 12 chr1 219400461 219400631 -62793033 + MER7A DNA MER2_type 1 181 -165 310 132 0 19 chr1 219400681 219400734 -62792930 + MER7A DNA MER2_type 171 222 -114 478 290 90 40 chr1 219400891 219401291 -62792373 - HAL1 LINE L1 -975 1532 1113 255 114 91 0 chr1 219403369 219403413 -62790251 - MLT2D LTR ERVL 0 414 367 294 237 28 11 chr1 219403416 219403593 -62790071 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 2124 168 79 5 chr1 219403593 219403987 -62789677 - MLT2C2 LTR ERVL -41 423 1 388 173 0 19 chr1 219405518 219405622 -62788042 + (TA)n Simple_repeat Simple_repeat 1 102 0 205 355 58 13 chr1 219405644 219405799 -62787865 - L2 LINE L2 -1222 2092 1931 392 244 84 23 chr1 219405875 219406006 -62787658 - MIR SINE MIR -8 254 116 3155 179 16 21 chr1 219406016 219406068 -62787596 - MER6A DNA MER2_type -260 605 554 2027 61 17 27 chr1 219406068 219406362 -62787302 + AluY SINE Alu 1 291 -20 3155 179 16 21 chr1 219406362 219406917 -62786747 - MER6A DNA MER2_type -311 554 1 25 0 0 0 chr1 219407116 219407141 -62786523 + AT_rich Low_complexity Low_complexity 1 25 0 2088 73 0 31 chr1 219407264 219407550 -62786114 - AluY SINE Alu -11 300 24 375 273 0 36 chr1 219407914 219408024 -62785640 + MER97b DNA MER1_type? 3 108 -945 599 267 45 25 chr1 219408029 219408231 -62785433 + MER97c DNA MER1_type? 368 573 -517 2019 218 11 45 chr1 219408388 219408860 -62784804 + L1PB4 LINE L1 5700 6155 -1 * 4955 183 31 9 chr1 219408853 219409846 -62783818 + L1MC1 LINE L1 5295 6309 -24 31 58 0 0 chr1 219409863 219409915 -62783749 + AT_rich Low_complexity Low_complexity 1 52 0 37 76 0 0 chr1 219409996 219410075 -62783589 + AT_rich Low_complexity Low_complexity 1 79 0 2574 55 0 0 chr1 219411989 219412298 -62781366 - AluY SINE Alu -2 309 1 1955 121 52 3 chr1 219412553 219412842 -62780822 - AluSx SINE Alu -9 303 1 24 0 0 0 chr1 219413463 219413487 -62780177 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr1 219413679 219413713 -62779951 + AT_rich Low_complexity Low_complexity 1 34 0 7397 35 5 0 chr1 219413713 219415046 -62778618 - L1PA4 LINE L1 -3 6152 4818 484 17 0 0 chr1 219415046 219415105 -62778559 + L1PA4 LINE L1 4762 4820 -1326 25 0 0 0 chr1 219415246 219415271 -62778393 + AT_rich Low_complexity Low_complexity 1 25 0 228 219 96 41 chr1 219415994 219416067 -62777597 - L2 LINE L2 0 3313 3237 29 0 0 0 chr1 219416123 219416152 -62777512 + AT_rich Low_complexity Low_complexity 1 29 0 1140 278 88 12 chr1 219416260 219416670 -62776994 - LTR40a LTR ERVL 0 519 79 277 236 42 0 chr1 219416724 219416796 -62776868 - Charlie2 DNA MER1_type -166 2696 2622 495 196 112 47 chr1 219416898 219416967 -62776697 - Charlie2 DNA MER1_type -420 2442 2379 5577 120 21 12 chr1 219416967 219417323 -62776341 - L1PB1 LINE L1 -3 6148 5797 216 0 0 0 chr1 219417323 219417347 -62776317 + (TG)n Simple_repeat Simple_repeat 2 25 0 5577 120 21 12 chr1 219417347 219418051 -62775613 - L1PB1 LINE L1 -354 5797 5068 495 196 112 47 chr1 219418051 219418257 -62775407 - Charlie2 DNA MER1_type -483 2379 2149 3008 195 54 25 chr1 219418268 219419070 -62774594 - L1MB1 LINE L1 -245 5923 5069 2100 140 0 0 chr1 219419070 219419370 -62774294 + AluSx SINE Alu 1 300 -12 3008 195 54 25 chr1 219419370 219419793 -62773871 - L1MB1 LINE L1 -1099 5069 4660 198 0 0 0 chr1 219419832 219419854 -62773810 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 960 122 0 0 chr1 219419856 219419987 -62773677 - AluSg/x SINE Alu -30 280 150 2090 220 42 6 chr1 219420036 219420513 -62773151 + MER67C LTR ERV1 1 494 -216 503 178 10 0 chr1 219420508 219420609 -62773055 + MER67C LTR ERV1 609 710 0 * 790 149 0 8 chr1 219421596 219421730 -62771934 + FLAM_C SINE Alu 1 133 0 1844 87 0 12 chr1 219423244 219423496 -62770168 + AluY SINE Alu 63 311 0 26 50 0 0 chr1 219423856 219423896 -62769768 + AT_rich Low_complexity Low_complexity 1 40 0 321 263 23 91 chr1 219424195 219424370 -62769294 + LTR68 LTR ERV1 1 163 -577 297 313 61 8 chr1 219424537 219424668 -62768996 + LTR68 LTR ERV1 297 434 -306 33 25 0 0 chr1 219425095 219425135 -62768529 + AT_rich Low_complexity Low_complexity 1 40 0 318 236 100 27 chr1 219426908 219427018 -62766646 + LTR37A LTR ERV1 4 121 -305 251 184 0 0 chr1 219427015 219427062 -62766602 - Tigger7 DNA MER2_type -36 2455 2409 343 247 24 12 chr1 219427062 219427147 -62766517 - Tigger5 DNA MER2_type 0 2323 2238 232 195 0 0 chr1 219427173 219427214 -62766450 - Tigger5 DNA MER2_type -2282 41 1 620 262 21 0 chr1 219427230 219427371 -62766293 - Tigger7 DNA MER2_type -2220 267 124 282 289 51 121 chr1 219428565 219428897 -62764767 - L2 LINE L2 -9 3304 2996 513 88 0 0 chr1 219428897 219428965 -62764699 - AluSp/q SINE Alu -16 297 230 211 378 14 40 chr1 219428965 219429113 -62764551 - L2 LINE L2 -339 2975 2832 28 61 0 0 chr1 219431164 219431213 -62762451 + AT_rich Low_complexity Low_complexity 1 49 0 440 268 16 77 chr1 219431221 219431404 -62762260 - LTR41 LTR ERVL -594 179 8 32 75 0 0 chr1 219431504 219431571 -62762093 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr1 219432248 219432278 -62761386 + AT_rich Low_complexity Low_complexity 1 30 0 761 169 11 11 chr1 219433022 219433199 -62760465 + GA-rich Low_complexity Low_complexity 2 178 0 503 267 86 73 chr1 219433437 219433740 -62759924 + L1MEd LINE L1 795 1101 -5018 282 143 0 0 chr1 219433761 219433810 -62759854 + (CA)n Simple_repeat Simple_repeat 2 50 0 407 218 0 11 chr1 219433903 219433990 -62759674 + Tigger5 DNA MER2_type 2234 2319 -4 668 63 0 11 chr1 219433990 219434085 -62759579 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 226 273 91 0 chr1 219434353 219434452 -62759212 - HAL1 LINE L1 -899 1608 1501 290 304 67 43 chr1 219434619 219434918 -62758746 - L1MEd LINE L1 -4864 1255 950 3234 174 13 8 chr1 219436464 219437063 -62756601 - MER7C DNA MER2_type 0 602 1 247 327 84 0 chr1 219437631 219437738 -62755926 - L2 LINE L2 -2 3311 3196 29 0 0 0 chr1 219437954 219437983 -62755681 + AT_rich Low_complexity Low_complexity 1 29 0 2773 193 45 7 chr1 219438434 219439073 -62754591 - L1MC2 LINE L1 -474 5870 5204 1208 327 43 16 chr1 219439076 219439562 -62754102 - L2 LINE L2 -1001 2313 1815 23 0 0 0 chr1 219441085 219441108 -62752556 + AT_rich Low_complexity Low_complexity 1 23 0 384 326 30 0 chr1 219442242 219442377 -62751287 + MIR SINE MIR 29 167 -95 3937 164 32 11 chr1 219442758 219443500 -62750164 - L1PA16 LINE L1 -1 6165 5408 7079 193 54 15 chr1 219443563 219444552 -62749112 - L1PA16 LINE L1 -741 5425 4341 321 82 0 0 chr1 219444552 219444601 -62749063 + (TG)n Simple_repeat Simple_repeat 2 50 0 7079 193 54 15 chr1 219444601 219445384 -62748280 - L1PA16 LINE L1 -1825 4341 3590 23 33 0 0 chr1 219445791 219445821 -62747843 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr1 219446774 219446798 -62746866 + (TA)n Simple_repeat Simple_repeat 1 24 0 1095 137 16 44 chr1 219446804 219446987 -62746677 - AluSg/x SINE Alu -30 282 105 3702 153 14 2 chr1 219448447 219449074 -62744590 - L1PA16 LINE L1 -9 6157 5523 532 292 140 66 chr1 219450079 219450442 -62743222 + L2 LINE L2 2869 3267 -46 2343 78 0 0 chr1 219450442 219450738 -62742926 + AluY SINE Alu 4 299 -12 532 292 140 66 chr1 219450738 219450781 -62742883 + L2 LINE L2 3267 3305 -8 1745 161 8 77 chr1 219451072 219451464 -62742200 - Tigger1 DNA MER2_type 0 2418 2054 * 7092 148 15 49 chr1 219451451 219452807 -62740857 - Tigger1 DNA MER2_type -1108 1310 1 1393 282 50 18 chr1 219453770 219454273 -62739391 - LTR40a LTR ERVL 0 519 1 296 263 69 38 chr1 219455163 219455323 -62738341 - MIR SINE MIR -62 200 36 724 221 36 3 chr1 219456473 219456711 -62736953 - L1PA16 LINE L1 -702 5481 5275 1942 93 24 14 chr1 219456713 219457003 -62736661 - L1PA8A LINE L1 0 6131 5839 8295 188 38 7 chr1 219457008 219457681 -62735983 - L1PA14 LINE L1 -3 6158 5507 1759 150 40 37 chr1 219457681 219458055 -62735609 - THE1C LTR MaLR 0 375 1 8295 188 38 7 chr1 219458055 219459896 -62733768 - L1PA14 LINE L1 -654 5507 3554 3377 212 32 31 chr1 219459896 219460869 -62732795 - L1 LINE L1 -816 6749 5776 1915 239 25 33 chr1 219460880 219461478 -62732186 + L1PA16 LINE L1 4741 5333 -813 1158 210 114 7 chr1 219461479 219461784 -62731880 + AluJb SINE Alu 2 335 0 237 98 24 0 chr1 219461786 219461827 -62731837 + L1PA16 LINE L1 5317 5358 -803 4152 155 44 9 chr1 219461830 219462580 -62731084 + L1PA16 LINE L1 5336 6111 -55 593 260 10 5 chr1 219462731 219462923 -62730741 - L1 LINE L1 -4414 3151 2959 26 82 0 0 chr1 219463827 219463888 -62729776 + AT_rich Low_complexity Low_complexity 1 61 0 341 348 0 7 chr1 219463929 219464070 -62729594 + L1ME LINE L1 5539 5678 -443 355 259 146 73 chr1 219464863 219465068 -62728596 + HAL1 LINE L1 1242 1461 -1046 2392 73 0 49 chr1 219466711 219467038 -62726626 - AluY SINE Alu 0 311 1 1669 161 62 9 chr1 219467365 219467688 -62725976 - MER2 DNA MER2_type 0 345 6 280 292 10 0 chr1 219467686 219467782 -62725882 + MER46C DNA MER2_type 241 337 -1 * 23 0 0 0 chr1 219467853 219467876 -62725788 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 219469145 219469172 -62724492 + AT_rich Low_complexity Low_complexity 1 27 0 422 356 7 7 chr1 219469359 219469508 -62724156 + MIR SINE MIR 2 150 -112 874 308 42 63 chr1 219469574 219470078 -62723586 + LTR68 LTR ERV1 114 606 -134 207 194 81 0 chr1 219470148 219470210 -62723454 + MIR SINE MIR 147 213 -49 22 35 0 0 chr1 219470309 219470338 -62723326 + AT_rich Low_complexity Low_complexity 1 29 0 1145 256 25 81 chr1 219470368 219470926 -62722738 - L1MD1 LINE L1 -7 6235 5709 3545 224 95 18 chr1 219470927 219472119 -62721545 - L1MDa LINE L1 -3983 2557 1274 225 200 55 0 chr1 219472328 219472383 -62721281 + MER77 LTR ERV1 177 234 -371 235 278 86 49 chr1 219472435 219472597 -62721067 + MER21B LTR ERV1 425 592 -271 1659 268 146 86 chr1 219472663 219473775 -62719889 - L1MDa LINE L1 -5285 1255 78 3666 162 8 12 chr1 219473793 219474459 -62719205 + L1PA16 LINE L1 5495 6157 -9 1839 166 49 9 chr1 219474472 219474995 -62718669 + L1M2 LINE L1 4942 5480 -748 443 52 0 0 chr1 219475415 219475473 -62718191 - L1MA5A LINE L1 -123 6174 6117 721 180 7 0 chr1 219475474 219475613 -62718051 + L1MA5A LINE L1 6146 6285 -12 27 0 0 0 chr1 219475620 219475647 -62718017 + AT_rich Low_complexity Low_complexity 1 27 0 1864 128 39 7 chr1 219475652 219475934 -62717730 + AluSq SINE Alu 1 291 -22 8341 192 26 19 chr1 219476638 219478322 -62715342 - L1M2 LINE L1 -743 6822 5162 1893 113 7 14 chr1 219478322 219478605 -62715059 - AluSq SINE Alu -18 295 15 8341 192 26 19 chr1 219478605 219478933 -62714731 - L1M2 LINE L1 -2403 5162 4838 930 244 63 51 chr1 219478955 219479443 -62714221 - L1M2 LINE L1 -5055 2510 2017 1898 263 9 43 chr1 219479553 219480105 -62713559 - L1M2 LINE L1 -6491 998 466 333 259 37 0 chr1 219480739 219480820 -62712844 + MER5B DNA MER1_type 7 90 -88 3198 90 2 13 chr1 219480840 219481297 -62712367 - L1PA8A LINE L1 -4 6127 5676 22 35 0 0 chr1 219482637 219482666 -62710998 + AT_rich Low_complexity Low_complexity 1 29 0 542 190 26 17 chr1 219483048 219483164 -62710500 + MLT1D LTR MaLR 1 117 -388 1729 191 138 45 chr1 219483170 219483635 -62710029 + MER67D LTR ERV1 1 508 -6 540 247 86 11 chr1 219483788 219483962 -62709702 + MLT1D LTR MaLR 269 455 -12 52 17 0 0 chr1 219486475 219486534 -62707130 + AT_rich Low_complexity Low_complexity 1 59 0 1860 137 146 16 chr1 219486534 219486856 -62706808 - THE1B LTR MaLR 0 364 1 9596 128 11 42 chr1 219486857 219488488 -62705176 - THE1B-int LTR MaLR 0 1580 1 2317 148 8 0 chr1 219488488 219488847 -62704817 - THE1B LTR MaLR 0 364 3 228 100 0 0 chr1 219489333 219489373 -62704291 + (A)n Simple_repeat Simple_repeat 1 40 0 1712 163 59 36 chr1 219490173 219490529 -62703135 + THE1B LTR MaLR 1 364 0 10482 132 8 4 chr1 219490529 219492103 -62701561 + THE1B-int LTR MaLR 1 1580 0 1943 144 36 30 chr1 219492103 219492465 -62701199 + THE1B LTR MaLR 1 364 0 270 136 0 0 chr1 219492960 219493004 -62700660 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 271 274 0 71 chr1 219494370 219494483 -62699181 + MER4-int LTR ERV1 1104 1208 -5390 180 279 68 93 chr1 219494565 219494726 -62698938 + MIR SINE MIR 87 243 -19 1359 234 89 39 chr1 219494750 219495242 -62698422 + Charlie1b DNA MER1_type 7 523 0 254 336 42 42 chr1 219496081 219496224 -62697440 - MLT2E LTR ERVL -474 154 12 1279 187 74 50 chr1 219496724 219497007 -62696657 - AluJo SINE Alu -21 291 2 24 53 0 0 chr1 219497180 219497218 -62696446 + AT_rich Low_complexity Low_complexity 1 38 0 644 256 82 5 chr1 219498809 219499004 -62694660 + MIR SINE MIR 40 249 -13 292 297 0 54 chr1 219499141 219499215 -62694449 + L2 LINE L2 3235 3304 -9 566 208 107 34 chr1 219499262 219499440 -62694224 - LTR67 LTR ERVL 0 557 367 24 32 0 0 chr1 219500601 219500632 -62693032 + AT_rich Low_complexity Low_complexity 1 31 0 1956 139 0 3 chr1 219501801 219502096 -62691568 + AluSx SINE Alu 1 294 -18 228 341 35 58 chr1 219502181 219502407 -62691257 - LTR67 LTR ERVL -296 261 41 315 0 0 0 chr1 219503330 219503365 -62690299 + (CA)n Simple_repeat Simple_repeat 2 36 0 393 254 173 0 chr1 219503954 219504064 -62689600 + FLAM_C SINE Alu 2 130 -3 240 170 38 0 chr1 219504215 219504268 -62689396 + Alu SINE Alu 247 301 0 21 36 0 0 chr1 219504348 219504376 -62689288 + AT_rich Low_complexity Low_complexity 1 28 0 1037 133 218 20 chr1 219506413 219506661 -62687003 + AluSp SINE Alu 1 297 -6 891 215 6 18 chr1 219506911 219507149 -62686515 - L1MB5 LINE L1 -240 5934 5716 42 20 0 0 chr1 219507427 219507476 -62686188 + AT_rich Low_complexity Low_complexity 1 49 0 192 152 0 0 chr1 219508423 219508456 -62685208 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 259 193 0 0 chr1 219508459 219508516 -62685148 + L1MC4 LINE L1 6653 6709 -1333 459 0 0 0 chr1 219508762 219508813 -62684851 + (TA)n Simple_repeat Simple_repeat 2 52 0 473 354 108 29 chr1 219509240 219509729 -62683935 + L3 LINE CR1 1049 1576 -1 483 324 36 40 chr1 219509945 219510223 -62683441 + MLT1I LTR MaLR 71 347 -62 375 316 44 39 chr1 219510248 219510454 -62683210 + MLT1I LTR MaLR 141 347 -62 225 0 0 0 chr1 219511320 219511345 -62682319 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 465 284 133 94 chr1 219511459 219511916 -62681748 + L3 LINE CR1 820 1294 -283 228 100 0 0 chr1 219511965 219512005 -62681659 + (T)n Simple_repeat Simple_repeat 1 40 0 204 391 78 0 chr1 219512087 219512202 -62681462 + L3 LINE CR1 1419 1542 -35 1334 164 64 50 chr1 219512974 219513255 -62680409 - AluJo SINE Alu -27 285 1 1585 173 3 11 chr1 219513466 219513788 -62679876 - AluSx SINE Alu 0 324 5 328 342 57 47 chr1 219513807 219514000 -62679664 + MIR SINE MIR 45 239 -23 774 319 27 45 chr1 219514190 219514594 -62679070 - MLT1I LTR MaLR -8 401 5 1928 160 68 31 chr1 219515695 219516189 -62677475 + MLT2A2 LTR ERVL 1 509 -45 596 148 0 0 chr1 219516190 219516291 -62677373 + AluSg/x SINE Alu 210 310 -2 354 159 0 0 chr1 219516292 219516355 -62677309 + MLT2A2 LTR ERVL 391 453 0 22 70 0 0 chr1 219516772 219516815 -62676849 + AT_rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chr1 219517175 219517196 -62676468 + (GA)n Simple_repeat Simple_repeat 2 22 0 235 313 76 61 chr1 219517293 219517424 -62676240 + MIR3 SINE MIR 37 169 -39 25 83 0 0 chr1 219517486 219517546 -62676118 + AT_rich Low_complexity Low_complexity 1 60 0 27 29 0 0 chr1 219517706 219517740 -62675924 + AT_rich Low_complexity Low_complexity 1 34 0 2220 110 0 7 chr1 219517761 219518070 -62675594 - AluSq SINE Alu -2 311 5 1156 289 92 46 chr1 219519066 219519478 -62674186 - L1ME3A LINE L1 -11 6159 5768 1570 158 83 47 chr1 219519478 219519840 -62673824 + THE1C LTR MaLR 1 375 0 1156 289 92 46 chr1 219519840 219520322 -62673342 - L1ME3A LINE L1 -402 5768 5221 23 86 0 0 chr1 219520355 219520413 -62673251 + AT_rich Low_complexity Low_complexity 1 58 0 217 87 87 0 chr1 219521280 219521326 -62672338 + T-rich Low_complexity Low_complexity 3 52 0 26 0 0 0 chr1 219521960 219521986 -62671678 + AT_rich Low_complexity Low_complexity 1 26 0 222 355 138 0 chr1 219522273 219522411 -62671253 + L2 LINE L2 2206 2362 -952 593 392 97 48 chr1 219522733 219523320 -62670344 - L2 LINE L2 -61 3252 2669 1286 163 60 4 chr1 219525261 219525494 -62668170 + AluJo SINE Alu 8 253 -59 234 200 40 0 chr1 219525563 219525613 -62668051 + FAM SINE Alu 123 174 -5 660 305 96 23 chr1 219526919 219527273 -62666391 + MLT1I LTR MaLR 1 380 -29 347 322 25 8 chr1 219527577 219527695 -62665969 + MLT1I LTR MaLR 205 324 -85 615 283 79 38 chr1 219528879 219529194 -62664470 + MLT1I LTR MaLR 80 407 -2 237 257 68 0 chr1 219529194 219529261 -62664403 - MLT1K LTR MaLR -35 553 482 28 48 0 0 chr1 219529878 219529920 -62663744 + AT_rich Low_complexity Low_complexity 1 42 0 1530 126 17 4 chr1 219531999 219532238 -62661426 + Charlie3 DNA MER1_type 2460 2701 -9 4251 34 10 2 chr1 219533625 219534148 -62659516 - L1PA4 LINE L1 0 6155 5629 21 0 0 0 chr1 219534176 219534197 -62659467 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 219535070 219535094 -62658570 + AT_rich Low_complexity Low_complexity 1 24 0 215 260 96 0 chr1 219535199 219535272 -62658392 + MIR SINE MIR 45 124 -84 1875 94 4 0 chr1 219535466 219535732 -62657932 + L1PA7 LINE L1 5875 6141 -13 9267 208 47 60 chr1 219535739 219536199 -62657465 + L1M1 LINE L1 2741 3206 -4359 1702 108 0 0 chr1 219536199 219536431 -62657233 + AluSg/x SINE Alu 71 302 -8 9267 208 47 60 chr1 219536431 219539510 -62654154 + L1M1 LINE L1 3206 6240 -1325 210 231 19 19 chr1 219540100 219540152 -62653512 - L2 LINE L2 -4 3268 3217 225 0 0 0 chr1 219540729 219540754 -62652910 + (TTA)n Simple_repeat Simple_repeat 3 27 0 19677 75 11 8 chr1 219540754 219544271 -62649393 - L1PA6 LINE L1 -18 6136 2605 12438 121 19 21 chr1 219544271 219546302 -62647362 - L1PA6 LINE L1 -3823 2323 296 236 174 0 0 chr1 219546282 219546328 -62647336 + L1PA6 LINE L1 254 299 -5847 * 443 255 3 91 chr1 219546369 219546667 -62646997 + L1M4 LINE L1 3154 3425 -2721 387 236 0 0 chr1 219546811 219546883 -62646781 + AluJ/FLAM SINE Alu 1 72 -230 2303 244 94 8 chr1 219546895 219547570 -62646094 + L1M4 LINE L1 3427 4175 -1971 459 0 0 0 chr1 219547570 219547621 -62646043 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2303 244 94 8 chr1 219547621 219547702 -62645962 + L1M4 LINE L1 4175 4248 -1898 1989 134 7 13 chr1 219547702 219548009 -62645655 + AluSx SINE Alu 1 305 -7 1128 215 21 84 chr1 219548051 219548386 -62645278 + L1MA9 LINE L1 5955 6274 -23 24 0 0 0 chr1 219548525 219548549 -62645115 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 219549168 219549203 -62644461 + AT_rich Low_complexity Low_complexity 1 35 0 210 191 0 0 chr1 219550837 219550879 -62642785 + (TA)n Simple_repeat Simple_repeat 2 43 0 2224 77 10 7 chr1 219551542 219551842 -62641822 - AluY SINE Alu -10 301 1 459 242 61 8 chr1 219552381 219552513 -62641151 - Charlie4 DNA MER1_type 0 1961 1823 26 30 0 0 chr1 219552696 219552729 -62640935 + AT_rich Low_complexity Low_complexity 1 33 0 246 300 50 30 chr1 219553126 219553226 -62640438 + L2 LINE L2 3205 3306 -7 2011 73 31 3 chr1 219553374 219553494 -62640170 + AluY SINE Alu 1 116 -195 207 0 0 0 chr1 219553494 219553517 -62640147 + (TA)n Simple_repeat Simple_repeat 1 23 0 2011 73 31 3 chr1 219553517 219553704 -62639960 + AluY SINE Alu 116 311 0 510 335 120 20 chr1 219554994 219555451 -62638213 + L1MC4a LINE L1 2509 3011 -3135 329 270 40 23 chr1 219555954 219556128 -62637536 + L1P LINE L1 3712 3888 -2258 723 154 0 24 chr1 219556225 219556348 -62637316 - FLAM_C SINE Alu -18 125 6 273 305 11 0 chr1 219556396 219556491 -62637173 + L1MC4a LINE L1 4023 4118 -2028 335 235 65 108 chr1 219556518 219556795 -62636869 + L1MC4a LINE L1 4163 4427 -1719 948 267 148 44 chr1 219557470 219558171 -62635493 + L1MC4a LINE L1 5255 6028 -1780 50 18 0 0 chr1 219558274 219558331 -62635333 + AT_rich Low_complexity Low_complexity 1 57 0 24 32 0 0 chr1 219558665 219558696 -62634968 + AT_rich Low_complexity Low_complexity 1 31 0 394 313 91 10 chr1 219559224 219559432 -62634232 + MIR SINE MIR 38 262 0 293 300 181 6 chr1 219560334 219560494 -62633170 + MIR SINE MIR 65 252 -10 564 220 173 7 chr1 219563309 219563459 -62630205 - MER5A DNA MER1_type 0 189 15 216 162 0 0 chr1 219563915 219563952 -62629712 + GA-rich Low_complexity Low_complexity 2 38 0 207 0 0 0 chr1 219564507 219564530 -62629134 + (CA)n Simple_repeat Simple_repeat 2 24 0 255 61 0 0 chr1 219564581 219564614 -62629050 + (CA)n Simple_repeat Simple_repeat 2 34 0 300 27 0 0 chr1 219565040 219565077 -62628587 + (TA)n Simple_repeat Simple_repeat 1 37 0 24 85 0 0 chr1 219565409 219565468 -62628196 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chr1 219565891 219565933 -62627731 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 219567213 219567238 -62626426 + AT_rich Low_complexity Low_complexity 1 25 0 183 274 111 89 chr1 219567291 219567481 -62626183 - MIR SINE MIR -32 230 37 573 349 30 17 chr1 219567884 219568179 -62625485 - L2 LINE L2 -1 3312 3014 279 341 189 20 chr1 219568199 219568554 -62625110 - L2 LINE L2 -431 2883 2469 22 56 0 0 chr1 219570523 219570559 -62623105 + AT_rich Low_complexity Low_complexity 1 36 0 189 211 42 84 chr1 219571196 219571267 -62622397 + MER5A DNA MER1_type 7 74 -115 * 491 221 257 0 chr1 219571205 219571345 -62622319 - MER5A DNA MER1_type -4 185 10 41 36 0 0 chr1 219571581 219571636 -62622028 + AT_rich Low_complexity Low_complexity 1 55 0 21 95 0 0 chr1 219572765 219572828 -62620836 + AT_rich Low_complexity Low_complexity 1 63 0 260 320 55 8 chr1 219573168 219573296 -62620368 + MLT1I LTR MaLR 2 135 -274 525 113 0 0 chr1 219573444 219573524 -62620140 + AluSg/x SINE Alu 174 253 -57 2052 114 3 26 chr1 219574889 219575196 -62618468 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr1 219576227 219576249 -62617415 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr1 219576678 219576707 -62616957 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr1 219576731 219576773 -62616891 + AT_rich Low_complexity Low_complexity 1 42 0 249 146 0 0 chr1 219578836 219578884 -62614780 + (TG)n Simple_repeat Simple_repeat 1 48 0 4366 168 41 29 chr1 219579252 219580226 -62613438 + L1MA8 LINE L1 5105 6119 -172 23 0 0 0 chr1 219580298 219580321 -62613343 + AT_rich Low_complexity Low_complexity 1 23 0 1374 200 24 20 chr1 219580326 219580621 -62613043 + AluJo SINE Alu 3 298 -14 4750 234 33 15 chr1 219580638 219582192 -62611472 - L1 LINE L1 -2632 4933 3342 1615 187 28 3 chr1 219582215 219582504 -62611160 - AluJb SINE Alu -16 296 1 2067 284 63 84 chr1 219582504 219583975 -62609689 - L1 LINE L1 -5359 2206 16 496 185 13 89 chr1 219583974 219583990 -62609674 - L1 LINE L1 -1003 5143 5127 * 186 43 0 0 chr1 219583990 219584013 -62609651 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 496 185 13 89 chr1 219584013 219584153 -62609511 - L1 LINE L1 -1019 5127 4999 5411 206 46 7 chr1 219584197 219585406 -62608258 + L1 LINE L1 3813 5068 -1078 1002 252 30 18 chr1 219585402 219585731 -62607933 - L1 LINE L1 -2064 4082 3750 * 345 82 0 0 chr1 219585732 219585781 -62607883 + (TG)n Simple_repeat Simple_repeat 1 49 0 5927 218 61 38 chr1 219585793 219587385 -62606279 - L1P LINE L1 -2475 3671 2001 2140 12 0 0 chr1 219587385 219587632 -62606032 - L1PA3 LINE L1 0 6155 5909 5927 218 61 38 chr1 219587632 219588407 -62605257 - L1P LINE L1 -4145 2001 1246 3824 55 218 12 chr1 219588406 219588993 -62604671 + L1P LINE L1 543 1250 -4896 * 1037 213 146 3 chr1 219588993 219589080 -62604584 - L1MDa LINE L1 -4102 2438 2365 843 122 0 0 chr1 219589080 219589211 -62604453 + (TA)n Simple_repeat Simple_repeat 2 132 0 1037 213 146 3 chr1 219589211 219589494 -62604170 - L1MDa LINE L1 -4175 2365 2015 851 253 25 0 chr1 219589936 219590177 -62603487 - L1MC1 LINE L1 0 6333 6087 326 100 17 0 chr1 219590183 219590243 -62603421 + (TA)n Simple_repeat Simple_repeat 1 61 0 29 70 0 0 chr1 219590359 219590416 -62603248 + AT_rich Low_complexity Low_complexity 1 57 0 187 292 80 35 chr1 219590659 219590772 -62602892 + L3 LINE CR1 1296 1413 -164 23 78 0 0 chr1 219591845 219591896 -62601768 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr1 219591968 219591999 -62601665 + AT_rich Low_complexity Low_complexity 1 31 0 236 351 21 21 chr1 219592034 219592128 -62601536 + MIR3 SINE MIR 63 156 -52 4975 165 37 38 chr1 219592309 219593887 -62599777 + L1MA6 LINE L1 4716 6296 -4 28 48 0 0 chr1 219594393 219594435 -62599229 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr1 219595140 219595173 -62598491 + AT_rich Low_complexity Low_complexity 1 33 0 1219 137 0 0 chr1 219595210 219595385 -62598279 - AluSg/x SINE Alu -6 306 132 482 91 0 0 chr1 219596307 219596373 -62597291 - L1PA3 LINE L1 -256 5898 5833 1879 43 0 0 chr1 219596373 219596603 -62597061 + L1PA3 LINE L1 5925 6155 0 2777 199 25 25 chr1 219596795 219597422 -62596242 + L1MB3 LINE L1 5550 6176 -7 23 33 0 0 chr1 219597842 219597872 -62595792 + AT_rich Low_complexity Low_complexity 1 30 0 181 410 36 15 chr1 219599170 219599365 -62594299 - L2 LINE L2 -219 3053 2855 411 21 0 0 chr1 219599984 219600032 -62593632 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 57 0 0 chr1 219600051 219600086 -62593578 + AT_rich Low_complexity Low_complexity 1 35 0 620 292 54 3 chr1 219601555 219601794 -62591870 - MIR SINE MIR 0 262 12 205 225 0 0 chr1 219602198 219602238 -62591426 - L2 LINE L2 -202 3070 3031 1657 233 42 14 chr1 219602247 219602731 -62590933 + MLT1D LTR MaLR 4 651 -3 513 284 102 57 chr1 219603784 219604206 -62589458 + MLT1J1 LTR MaLR 6 446 0 702 262 6 6 chr1 219604211 219604379 -62589285 - MIR SINE MIR -87 175 8 2051 133 3 0 chr1 219604841 219605143 -62588521 + AluSx SINE Alu 1 303 -9 188 358 148 12 chr1 219605314 219605557 -62588107 + L2 LINE L2 1381 1656 -1658 2265 140 51 17 chr1 219607392 219607806 -62585858 - MSTA LTR MaLR 0 428 1 4188 167 33 55 chr1 219607986 219608473 -62585191 - MER6 DNA MER2_type -2 863 402 186 43 0 0 chr1 219608473 219608496 -62585168 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 4188 167 33 55 chr1 219608496 219608859 -62584805 - MER6 DNA MER2_type -463 402 32 221 222 16 0 chr1 219608887 219608950 -62584714 + (TA)n Simple_repeat Simple_repeat 1 64 0 255 256 11 11 chr1 219609940 219610030 -62583634 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 31 0 0 chr1 219610700 219610732 -62582932 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr1 219611200 219611223 -62582441 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 219612628 219612659 -62581005 + AT_rich Low_complexity Low_complexity 1 31 0 10324 209 46 35 chr1 219613910 219614983 -62578681 + L1PA16 LINE L1 1860 2920 -3946 2086 142 3 0 chr1 219614983 219615294 -62578370 + AluSx SINE Alu 1 312 0 10324 209 46 35 chr1 219615294 219619045 -62574619 + L1PA16 LINE L1 2920 6851 -15 25 0 0 0 chr1 219619164 219619189 -62574475 + AT_rich Low_complexity Low_complexity 1 25 0 345 243 43 3 chr1 219619496 219619605 -62574059 + MLT1J1 LTR MaLR 85 196 -254 21 36 0 0 chr1 219619930 219619958 -62573706 + AT_rich Low_complexity Low_complexity 1 28 0 391 330 67 59 chr1 219621023 219621262 -62572402 - MIR SINE MIR -7 255 15 686 319 104 13 chr1 219621596 219621913 -62571751 - L3 LINE CR1 -19 1558 1213 25 51 0 0 chr1 219622040 219622079 -62571585 + AT_rich Low_complexity Low_complexity 1 39 0 776 107 0 8 chr1 219624728 219624850 -62568814 + (TTCC)n Simple_repeat Simple_repeat 2 122 0 1984 177 55 29 chr1 219625245 219625772 -62567892 + MLT2A2 LTR ERVL 1 554 0 213 39 0 0 chr1 219625811 219625837 -62567827 + (TTG)n Simple_repeat Simple_repeat 2 27 0 423 0 0 0 chr1 219626951 219626998 -62566666 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 219 356 23 11 chr1 219628868 219628955 -62564709 - L2 LINE L2 -44 3269 3182 1325 220 52 78 chr1 219629781 219630295 -62563369 - MLT1D LTR MaLR 0 505 5 482 332 39 10 chr1 219631324 219631529 -62562135 + MIR SINE MIR 37 247 -15 210 259 0 0 chr1 219631529 219631587 -62562077 + (TTA)n Simple_repeat Simple_repeat 3 60 0 526 292 96 12 chr1 219632133 219632373 -62561291 - MIR SINE MIR -1 261 2 23 0 0 0 chr1 219633246 219633269 -62560395 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr1 219633879 219633926 -62559738 + AT_rich Low_complexity Low_complexity 1 47 0 2101 108 0 3 chr1 219635097 219635385 -62558279 - AluSc SINE Alu -22 287 1 1811 132 68 0 chr1 219638768 219639049 -62554615 - AluSp SINE Alu -13 300 1 272 390 19 0 chr1 219640244 219640403 -62553261 + MER20B DNA MER1_type 17 178 -605 189 0 0 0 chr1 219640785 219640806 -62552858 + (TC)n Simple_repeat Simple_repeat 2 22 0 623 228 70 6 chr1 219642185 219642356 -62551308 + MER20 DNA MER1_type 38 219 0 221 364 0 0 chr1 219642388 219642454 -62551210 + L2 LINE L2 3204 3269 -3 291 339 114 33 chr1 219642615 219642948 -62550716 + L2 LINE L2 2498 2857 -457 1867 257 48 17 chr1 219642962 219643655 -62550009 + MER99 DNA DNA 31 827 -1 191 390 0 57 chr1 219643708 219643831 -62549833 + L2 LINE L2 2929 3044 -269 353 131 16 0 chr1 219644406 219644467 -62549197 - MLT1D LTR MaLR -1 504 443 1052 242 30 15 chr1 219644490 219644754 -62548910 - MLT1D LTR MaLR -237 268 1 1897 35 0 0 chr1 219645511 219645739 -62547925 - L1PA5 LINE L1 -1390 4756 4529 7133 53 1 1 chr1 219645740 219647119 -62546545 + L1PA5 LINE L1 4776 6154 0 365 305 94 62 chr1 219647266 219647425 -62546239 + MER77 LTR ERV1 138 290 -315 592 225 8 0 chr1 219647425 219647545 -62546119 + FLAM_A SINE Alu 1 121 -12 246 62 0 0 chr1 219647547 219647579 -62546085 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 365 305 94 62 chr1 219647579 219647804 -62545860 + MER77 LTR ERV1 290 586 -19 450 274 16 8 chr1 219648206 219648330 -62545334 + MER94 DNA DNA 1 125 -9 192 271 156 55 chr1 219648711 219648910 -62544754 - L2 LINE L2 -54 3259 3041 2157 123 0 3 chr1 219649337 219649647 -62544017 - AluSc SINE Alu 0 309 1 1240 262 3 67 chr1 219649809 219650198 -62543466 + MLT1A2 LTR MaLR 11 374 0 229 103 0 0 chr1 219650473 219650502 -62543162 + MLT1E3 LTR MaLR 1 29 -625 1856 169 41 36 chr1 219650502 219650864 -62542800 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr1 219650869 219650894 -62542770 + AT_rich Low_complexity Low_complexity 1 25 0 956 247 157 66 chr1 219650944 219651385 -62542279 + MLT1E3 LTR MaLR 174 624 0 408 337 71 50 chr1 219651468 219651931 -62541733 - L2 LINE L2 -525 2789 2317 31 26 0 0 chr1 219652548 219652586 -62541078 + AT_rich Low_complexity Low_complexity 1 38 0 318 294 59 65 chr1 219653277 219653447 -62540217 - L2 LINE L2 -7 3306 3138 255 174 17 52 chr1 219653449 219653564 -62540100 + (TTATA)n Simple_repeat Simple_repeat 3 113 0 254 102 51 51 chr1 219653572 219653670 -62539994 + (TATAA)n Simple_repeat Simple_repeat 1 98 0 24 67 0 0 chr1 219653676 219653721 -62539943 + AT_rich Low_complexity Low_complexity 1 45 0 226 227 0 15 chr1 219653727 219653793 -62539871 - LTR66 LTR ERVL -152 458 394 2553 116 14 0 chr1 219654076 219654446 -62539218 - THE1C LTR MaLR 0 375 1 8879 135 48 46 chr1 219654446 219656022 -62537642 - THE1C-int LTR MaLR 0 1580 1 2544 134 0 13 chr1 219656022 219656325 -62537339 - THE1C LTR MaLR 0 375 76 4744 93 14 3 chr1 219656325 219656978 -62536686 + PABL_A LTR ERV1 1 660 0 2544 134 0 13 chr1 219656978 219657054 -62536610 - THE1C LTR MaLR -299 76 1 26 64 0 0 chr1 219657771 219657818 -62535846 + AT_rich Low_complexity Low_complexity 1 47 0 364 283 122 40 chr1 219658141 219658388 -62535276 + L1 LINE L1 3199 3465 -2681 3860 203 15 40 chr1 219658714 219659754 -62533910 - L1M2 LINE L1 -749 5397 4518 1910 115 0 0 chr1 219661087 219661348 -62532316 + AluSx SINE Alu 38 298 -14 234 0 0 0 chr1 219661377 219661403 -62532261 + (TG)n Simple_repeat Simple_repeat 1 26 0 285 182 0 0 chr1 219661403 219661458 -62532206 + L1MC4 LINE L1 6649 6703 -1339 647 284 5 56 chr1 219661471 219661686 -62531978 - MER82 DNA MER2_type -6 647 444 434 99 0 121 chr1 219661717 219661808 -62531856 - MADE1 DNA Mariner 0 80 1 394 311 51 17 chr1 219661911 219662088 -62531576 + MIR SINE MIR 31 213 -49 318 211 132 0 chr1 219662115 219662191 -62531473 - MER82 DNA MER2_type -567 86 1 207 114 0 0 chr1 219662223 219662258 -62531406 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 365 327 54 23 chr1 219662260 219662657 -62531007 + L1 LINE L1 4004 4410 -1736 241 240 40 0 chr1 219663162 219663237 -62530427 - L1MC4 LINE L1 -1351 6691 6614 226 244 56 11 chr1 219663475 219663565 -62530099 + L1M LINE L1 5254 5347 -2461 233 181 56 83 chr1 219664462 219664534 -62529130 - MIR SINE MIR -74 188 119 281 242 0 109 chr1 219664918 219665046 -62528618 + Charlie5 DNA MER1_type 9 122 -2490 1927 236 51 64 chr1 219665291 219665564 -62528100 + L1 LINE L1 4014 4289 -1857 237 108 0 0 chr1 219665564 219665601 -62528063 + (CA)n Simple_repeat Simple_repeat 2 38 0 1927 236 51 64 chr1 219665601 219666074 -62527590 + L1 LINE L1 4289 4750 -1396 410 265 23 113 chr1 219666075 219666332 -62527332 + MLT1L LTR MaLR 151 384 -231 1338 266 18 18 chr1 219666692 219667026 -62526638 + LTR40a LTR ERVL 186 519 0 202 364 106 36 chr1 219667180 219667622 -62526042 - L2 LINE L2 0 3313 2841 2280 100 3 3 chr1 219667661 219667970 -62525694 + AluSg SINE Alu 1 309 -1 670 362 125 18 chr1 219668004 219668571 -62525093 - L2 LINE L2 -591 2723 2096 238 382 55 0 chr1 219668711 219668821 -62524843 - MIR SINE MIR -101 161 46 244 368 35 21 chr1 219668871 219669016 -62524648 - MIR SINE MIR -67 141 47 294 29 0 0 chr1 219669212 219669247 -62524417 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 801 261 37 18 chr1 219671794 219672012 -62521652 - MIR SINE MIR 0 262 41 21 57 0 0 chr1 219672033 219672068 -62521596 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 219672504 219672528 -62521136 + AT_rich Low_complexity Low_complexity 1 24 0 304 388 31 12 chr1 219672528 219672688 -62520976 - MIR SINE MIR -21 241 79 7719 20 1 0 chr1 219672832 219674187 -62519477 + L1PA3 LINE L1 4811 6155 0 28 48 0 0 chr1 219674192 219674234 -62519430 + AT_rich Low_complexity Low_complexity 1 42 0 40 87 0 0 chr1 219674356 219674459 -62519205 + AT_rich Low_complexity Low_complexity 1 103 0 457 316 47 42 chr1 219674547 219674762 -62518902 + MIR SINE MIR 2 217 -45 1292 318 61 12 chr1 219674977 219675547 -62518117 + L3 LINE CR1 613 1210 -367 1031 314 39 3 chr1 219675554 219675891 -62517773 + L2 LINE L2 2015 2363 -951 24 0 0 0 chr1 219675961 219675985 -62517679 + AT_rich Low_complexity Low_complexity 1 24 0 189 371 34 34 chr1 219676016 219676105 -62517559 + L3 LINE CR1 1431 1519 -58 239 173 77 0 chr1 219676227 219676279 -62517385 - L2 LINE L2 -10 3303 3248 1364 244 58 13 chr1 219676294 219676691 -62516973 + MLT1C LTR MaLR 53 467 0 727 287 79 63 chr1 219677699 219678093 -62515571 - L2 LINE L2 -1381 1933 1534 1269 282 179 44 chr1 219678154 219678992 -62514672 - L2 LINE L2 -2342 972 22 443 281 39 46 chr1 219680291 219680444 -62513220 - MIR SINE MIR -71 191 40 282 256 35 0 chr1 219681095 219681181 -62512483 + (CATATA)n Simple_repeat Simple_repeat 6 94 0 30 45 0 0 chr1 219682680 219682724 -62510940 + AT_rich Low_complexity Low_complexity 1 44 0 384 59 0 0 chr1 219683909 219683960 -62509704 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 448 307 31 25 chr1 219684017 219684180 -62509484 - MIR SINE MIR -64 198 35 240 35 0 0 chr1 219684658 219684687 -62508977 + (TA)n Simple_repeat Simple_repeat 1 29 0 35 0 0 0 chr1 219685687 219685722 -62507942 + AT_rich Low_complexity Low_complexity 1 35 0 256 328 107 15 chr1 219686601 219686732 -62506932 - MIR SINE MIR -4 258 116 250 297 34 80 chr1 219688605 219688780 -62504884 + MLT1L LTR MaLR 34 200 -415 1869 125 0 48 chr1 219689029 219689342 -62504322 + AluSx SINE Alu 12 309 -3 453 315 43 16 chr1 219689437 219689621 -62504043 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr1 219689749 219689770 -62503894 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 219690184 219690206 -62503458 + AT_rich Low_complexity Low_complexity 1 22 0 1511 176 22 0 chr1 219690649 219690961 -62502703 - AluJb SINE Alu 0 328 11 193 276 211 32 chr1 219691912 219692035 -62501629 - MIR SINE MIR -13 249 105 24 32 0 0 chr1 219692281 219692312 -62501352 + AT_rich Low_complexity Low_complexity 1 31 0 386 227 29 87 chr1 219692540 219692712 -62500952 - MIR SINE MIR -25 237 76 2629 42 0 0 chr1 219693113 219693424 -62500240 + AluY SINE Alu 1 311 0 23 33 0 0 chr1 219694723 219694753 -62498911 + AT_rich Low_complexity Low_complexity 1 30 0 2402 50 37 0 chr1 219695951 219696128 -62497536 - AluY SINE Alu -2 309 115 204 67 0 0 chr1 219696128 219696158 -62497506 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2402 50 37 0 chr1 219696158 219696278 -62497386 - AluY SINE Alu -196 115 1 274 367 11 0 chr1 219696378 219696468 -62497196 + MIR3 SINE MIR 97 187 -21 259 280 67 0 chr1 219696631 219696706 -62496958 + MER20 DNA MER1_type 4 83 -136 764 198 42 62 chr1 219696856 219697048 -62496616 + MER20 DNA MER1_type 31 218 -1 819 148 0 0 chr1 219697054 219697176 -62496488 + FLAM_C SINE Alu 1 122 -21 211 236 11 11 chr1 219697917 219698006 -62495658 + CT-rich Low_complexity Low_complexity 2 90 0 601 338 116 58 chr1 219698071 219698795 -62494869 - L2 LINE L2 -708 2606 1841 903 275 94 29 chr1 219698798 219699350 -62494314 + L1M4 LINE L1 4525 5112 -1034 187 254 73 0 chr1 219699454 219699509 -62494155 + MER5C DNA MER1_type 94 152 -172 324 226 51 113 chr1 219699595 219699790 -62493874 + HAL1 LINE L1 37 219 -2288 248 0 31 0 chr1 219700319 219700351 -62493313 + (TA)n Simple_repeat Simple_repeat 2 34 0 2437 8 0 0 chr1 219700377 219700682 -62492982 - AluYa5 SINE Alu 0 320 16 217 224 0 20 chr1 219700832 219700881 -62492783 + GA-rich Low_complexity Low_complexity 3 50 0 21 0 0 0 chr1 219700935 219700956 -62492708 + AT_rich Low_complexity Low_complexity 1 21 0 291 214 0 0 chr1 219701092 219701162 -62492502 + (TG)n Simple_repeat Simple_repeat 2 71 0 861 263 59 55 chr1 219701285 219701732 -62491932 + MLT1D LTR MaLR 14 505 0 21 0 0 0 chr1 219701879 219701900 -62491764 + AT_rich Low_complexity Low_complexity 1 21 0 527 213 0 16 chr1 219701900 219702022 -62491642 - FRAM SINE Alu -14 162 43 25 31 0 0 chr1 219702220 219702252 -62491412 + AT_rich Low_complexity Low_complexity 1 32 0 342 352 47 21 chr1 219702289 219702482 -62491182 - MLT1J LTR MaLR -2 509 312 1106 235 25 35 chr1 219703557 219703842 -62489822 + AluJo SINE Alu 1 282 -30 194 315 79 11 chr1 219704327 219704416 -62489248 + L2 LINE L2 3201 3295 -18 249 314 118 24 chr1 219704576 219704745 -62488919 - MIR SINE MIR 0 262 78 884 158 20 0 chr1 219706132 219706284 -62487380 - AluJb SINE Alu -157 155 1 234 0 0 0 chr1 219707626 219707652 -62486012 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 0 24 0 chr1 219709225 219709266 -62484398 + (TTA)n Simple_repeat Simple_repeat 2 43 0 286 245 32 53 chr1 219709614 219709708 -62483956 + MIR SINE MIR 49 140 -122 400 326 49 38 chr1 219709984 219710168 -62483496 + MIR SINE MIR 40 225 -37 24 32 0 0 chr1 219711372 219711403 -62482261 + AT_rich Low_complexity Low_complexity 1 31 0 593 184 46 0 chr1 219714164 219714273 -62479391 - MER2 DNA MER2_type -231 114 1 1154 191 21 17 chr1 219714313 219714548 -62479116 - MER46A DNA MER2_type 0 236 1 28 0 0 0 chr1 219714696 219714724 -62478940 + AT_rich Low_complexity Low_complexity 1 28 0 201 248 166 48 chr1 219714782 219714927 -62478737 + MIR SINE MIR 92 253 -9 1889 144 0 12 chr1 219715671 219715990 -62477674 - L1PA13 LINE L1 -1 6162 5848 434 76 15 15 chr1 219716188 219716254 -62477410 + MLT1E2 LTR MaLR 558 623 -3 870 152 0 0 chr1 219716597 219716748 -62476916 + L1MA5 LINE L1 6144 6294 -6 193 381 0 0 chr1 219716949 219717012 -62476652 - MIR SINE MIR -16 246 184 305 298 120 6 chr1 219717177 219717335 -62476329 + L1MC/D LINE L1 5668 5843 -1965 1894 145 13 16 chr1 219717520 219717830 -62475834 - AluSx SINE Alu -3 309 1 22 0 0 0 chr1 219719085 219719107 -62474557 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr1 219719269 219719305 -62474359 + AT_rich Low_complexity Low_complexity 1 36 0 1753 144 7 0 chr1 219719311 219719582 -62474082 - AluSx SINE Alu -26 286 14 29 28 0 0 chr1 219719590 219719626 -62474038 + AT_rich Low_complexity Low_complexity 1 36 0 323 321 62 40 chr1 219721075 219721349 -62472315 + L2 LINE L2 2577 2856 -458 299 299 47 87 chr1 219721397 219721651 -62472013 + L2 LINE L2 2944 3187 -126 1638 153 44 11 chr1 219722037 219722347 -62471317 - AluSx SINE Alu 0 319 1 559 223 21 47 chr1 219722403 219722596 -62471068 - Charlie1 DNA MER1_type -14 2747 2560 261 135 0 39 chr1 219722584 219722636 -62471028 - Charlie1 DNA MER1_type -2655 106 57 * 392 239 62 91 chr1 219723300 219723509 -62470155 + MER31-int LTR ERV1 3330 3532 -1404 996 214 127 30 chr1 219723766 219724135 -62469529 + LTR37A LTR ERV1 22 426 0 219 382 0 0 chr1 219724779 219724847 -62468817 - L2 LINE L2 -19 3253 3186 187 330 104 28 chr1 219725127 219725233 -62468431 + MIR SINE MIR 39 152 -56 408 158 248 0 chr1 219725250 219725351 -62468313 + MER110A LTR ERV1 20 145 -323 560 251 27 49 chr1 219725355 219725578 -62468086 + MER110A LTR ERV1 251 468 0 36 100 0 0 chr1 219726173 219726293 -62467371 + AT_rich Low_complexity Low_complexity 1 120 0 29 28 0 0 chr1 219727244 219727280 -62466384 + AT_rich Low_complexity Low_complexity 1 36 0 180 310 81 11 chr1 219728469 219728556 -62465108 - MIR3 SINE MIR -10 198 106 732 305 82 19 chr1 219729105 219729423 -62464241 - MER46C DNA MER2_type 0 338 1 193 319 14 0 chr1 219729494 219729563 -62464101 + L3 LINE CR1 632 701 -876 299 347 0 54 chr1 219729813 219729980 -62463684 + L3 LINE CR1 1419 1576 -1 206 280 21 11 chr1 219730591 219730684 -62462980 + (TG)n Simple_repeat Simple_repeat 2 95 0 276 30 0 0 chr1 219730730 219730763 -62462901 + (TG)n Simple_repeat Simple_repeat 2 34 0 1860 128 48 3 chr1 219730840 219731129 -62462535 - AluSq SINE Alu -8 305 4 1507 75 10 0 chr1 219731166 219731365 -62462299 + AluY SINE Alu 110 310 -1 2030 183 37 28 chr1 219731435 219731872 -62461792 + MER101B LTR ERV1 3 443 -127 2029 116 3 22 chr1 219731882 219732201 -62461463 + AluSp SINE Alu 1 313 0 3268 191 77 46 chr1 219733070 219733973 -62459691 - L1MB7 LINE L1 -64 6120 5188 221 139 23 0 chr1 219733981 219734024 -62459640 + CT-rich Low_complexity Low_complexity 2 45 0 283 245 43 0 chr1 219734136 219734230 -62459434 - L1MB7 LINE L1 -3012 3134 3037 2409 154 23 18 chr1 219734252 219734483 -62459181 - L1PA16 LINE L1 -2 6164 5929 2163 107 75 23 chr1 219734483 219734829 -62458835 - THE1B LTR MaLR 0 364 1 2409 154 23 18 chr1 219734829 219735039 -62458625 - L1PA16 LINE L1 -237 5929 5721 181 367 129 20 chr1 219735297 219735444 -62458220 - L2 LINE L2 -901 2413 2251 452 171 0 0 chr1 219735511 219735581 -62458083 - MER8 DNA MER2_type 0 239 170 673 209 11 88 chr1 219735630 219735812 -62457852 - MER8 DNA MER2_type -71 168 1 1382 168 71 41 chr1 219736913 219737277 -62456387 - THE1C LTR MaLR 0 375 1 606 302 69 5 chr1 219737383 219737572 -62456092 + MER63A DNA MER1_type 2 202 -8 2293 260 53 10 chr1 219737747 219738467 -62455197 - Charlie1a DNA MER1_type -662 793 43 339 281 55 8 chr1 219738850 219738978 -62454686 + MLT1J LTR MaLR 376 509 -2 755 208 63 0 chr1 219739008 219739167 -62454497 - FRAM SINE Alu -7 169 1 180 0 0 0 chr1 219740370 219740390 -62453274 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 80 0 0 chr1 219740643 219740693 -62452971 + AT_rich Low_complexity Low_complexity 1 50 0 1177 155 15 5 chr1 219741712 219741912 -62451752 - AluSg/x SINE Alu -7 303 102 207 0 0 0 chr1 219742592 219742615 -62451049 + (CA)n Simple_repeat Simple_repeat 2 24 0 303 28 0 0 chr1 219743220 219743256 -62450408 + (CA)n Simple_repeat Simple_repeat 1 36 0 698 327 27 16 chr1 219743707 219743964 -62449700 - MIR SINE MIR -2 260 1 316 296 37 0 chr1 219744034 219744142 -62449522 + HAL1 LINE L1 992 1103 -1404 504 0 0 0 chr1 219744229 219744285 -62449379 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 1939 83 14 14 chr1 219744288 219744566 -62449098 - AluY SINE Alu -32 279 2 322 287 78 35 chr1 219745670 219745900 -62447764 + L1 LINE L1 4194 4433 -1713 228 301 150 15 chr1 219746188 219746321 -62447343 + MIR SINE MIR 64 214 -48 207 162 0 0 chr1 219746348 219746385 -62447279 + (ATG)n Simple_repeat Simple_repeat 2 38 0 4181 98 3 8 chr1 219746677 219747030 -62446634 - L1PB2 LINE L1 -5 6146 5796 192 77 0 0 chr1 219747030 219747056 -62446608 + (TATG)n Simple_repeat Simple_repeat 4 29 0 4181 98 3 8 chr1 219747056 219747306 -62446358 - L1PB2 LINE L1 -355 5796 5546 298 106 0 0 chr1 219747557 219747604 -62446060 + L1 LINE L1 4274 4320 -1826 513 325 73 39 chr1 219747753 219748138 -62445526 - L2 LINE L2 -108 3205 2808 23 0 0 0 chr1 219748346 219748369 -62445295 + AT_rich Low_complexity Low_complexity 1 23 0 271 323 46 0 chr1 219748488 219748618 -62445046 - L1MC4 LINE L1 -1153 6889 6754 21 0 0 0 chr1 219750133 219750154 -62443510 + AT_rich Low_complexity Low_complexity 1 21 0 382 265 31 15 chr1 219750522 219750733 -62442931 - L1M LINE L1 -746 5418 5201 238 233 60 68 chr1 219750734 219750867 -62442797 - L1M4 LINE L1 -993 5153 5022 2149 121 7 0 chr1 219751025 219751359 -62442305 + AluSg SINE Alu 1 336 0 181 287 104 52 chr1 219751360 219751475 -62442189 - MIR SINE MIR -128 134 14 23 0 0 0 chr1 219751619 219751642 -62442022 + AT_rich Low_complexity Low_complexity 1 23 0 236 303 57 33 chr1 219752902 219753024 -62440640 + L2 LINE L2 3142 3266 -47 21 0 0 0 chr1 219753313 219753334 -62440330 + AT_rich Low_complexity Low_complexity 1 21 0 2035 137 3 13 chr1 219753400 219753715 -62439949 - AluSx SINE Alu 0 312 1 2271 102 3 0 chr1 219754628 219754932 -62438732 + AluSp SINE Alu 1 305 -8 22 35 0 0 chr1 219755036 219755065 -62438599 + AT_rich Low_complexity Low_complexity 1 29 0 228 337 57 74 chr1 219755508 219755683 -62437981 + L2 LINE L2 2637 2808 -506 370 264 71 29 chr1 219755930 219756070 -62437594 + MIR SINE MIR 52 197 -65 30 0 0 0 chr1 219756105 219756135 -62437529 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 219757297 219757324 -62436340 + AT_rich Low_complexity Low_complexity 1 27 0 233 312 13 78 chr1 219758452 219758606 -62435058 + L2 LINE L2 2566 2709 -605 364 358 160 16 chr1 219758698 219759067 -62434597 + L2 LINE L2 2863 3284 -29 2256 205 121 4 chr1 219759864 219760367 -62433297 - MLT1F1 LTR MaLR -5 562 1 213 297 7 41 chr1 219760542 219760687 -62432977 + (CAATA)n Simple_repeat Simple_repeat 4 143 0 264 289 18 27 chr1 219761735 219761879 -62431785 + MIR SINE MIR 23 146 -62 317 340 59 47 chr1 219762026 219762282 -62431382 - MLT1J1 LTR MaLR -131 315 57 245 362 75 0 chr1 219762320 219762414 -62431250 + MIR SINE MIR 154 254 -8 215 292 100 39 chr1 219764711 219764841 -62428823 - MIR SINE MIR -59 203 66 253 349 54 16 chr1 219764890 219765019 -62428645 + MLT1I LTR MaLR 73 206 -203 313 354 66 38 chr1 219765058 219765346 -62428318 - MLT1I LTR MaLR -18 391 96 22 94 0 0 chr1 219765583 219765647 -62428017 + AT_rich Low_complexity Low_complexity 1 64 0 28 61 0 0 chr1 219765771 219765820 -62427844 + AT_rich Low_complexity Low_complexity 1 49 0 180 427 67 0 chr1 219766010 219766085 -62427579 + L2 LINE L2 3112 3191 -81 384 277 145 25 chr1 219766145 219766380 -62427284 - L2 LINE L2 -124 3189 2927 477 303 61 43 chr1 219767040 219767317 -62426347 - MLT1J LTR MaLR -229 282 1 284 230 40 0 chr1 219767694 219767768 -62425896 + MIR3 SINE MIR 132 208 0 22 35 0 0 chr1 219768088 219768117 -62425547 + AT_rich Low_complexity Low_complexity 1 29 0 1614 219 57 26 chr1 219768317 219768701 -62424963 - MSTD LTR MaLR 0 396 1 955 265 21 71 chr1 219769274 219769614 -62424050 - LTR40a LTR ERVL -2 517 138 880 196 83 116 chr1 219769895 219770004 -62423660 - MLT1C LTR MaLR 0 390 279 1255 36 6 24 chr1 219770004 219770169 -62423495 - L1PA4 LINE L1 -3 6152 5991 880 196 83 116 chr1 219770169 219770457 -62423207 - MLT1C LTR MaLR -111 279 6 223 254 0 0 chr1 219770484 219770539 -62423125 + (TGAA)n Simple_repeat Simple_repeat 3 57 0 24 32 0 0 chr1 219771423 219771454 -62422210 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr1 219771503 219771528 -62422136 + (CAGTA)n Simple_repeat Simple_repeat 1 25 0 2073 94 3 33 chr1 219771941 219772240 -62421424 + AluSg1 SINE Alu 1 290 -19 30 0 0 0 chr1 219772240 219772270 -62421394 + AT_rich Low_complexity Low_complexity 1 30 0 1731 137 9 44 chr1 219773156 219773477 -62420187 + AluSg SINE Alu 1 310 0 502 232 89 106 chr1 219774275 219774521 -62419143 + MIR SINE MIR 18 259 -3 21 0 0 0 chr1 219774547 219774568 -62419096 + AT_rich Low_complexity Low_complexity 1 21 0 348 269 77 74 chr1 219774974 219775391 -62418273 + L1MC5 LINE L1 7365 7782 -179 720 353 72 11 chr1 219777782 219778382 -62415282 - L2 LINE L2 -19 3294 2653 363 44 0 0 chr1 219778382 219778427 -62415237 + (CA)n Simple_repeat Simple_repeat 2 46 0 2072 156 108 10 chr1 219778563 219778953 -62414711 - MSTA LTR MaLR 0 428 1 235 323 65 39 chr1 219779008 219779163 -62414501 - MIR3 SINE MIR -6 202 44 234 206 0 0 chr1 219779625 219779688 -62413976 + GA-rich Low_complexity Low_complexity 4 66 0 353 206 36 66 chr1 219779822 219779943 -62413721 - L1MA9 LINE L1 -7 6284 6167 308 286 88 41 chr1 219781226 219781502 -62412162 - MLT1J LTR MaLR -206 305 15 1893 54 8 39 chr1 219781745 219782003 -62411661 - AluY SINE Alu -4 307 58 191 377 31 39 chr1 219782740 219782870 -62410794 + MIR SINE MIR 114 242 -20 3051 174 0 56 chr1 219782875 219783462 -62410202 - MLT2B3 LTR ERVL 0 554 1 205 308 0 39 chr1 219785066 219785144 -62408520 + L3 LINE CR1 326 400 -1177 232 366 49 32 chr1 219785222 219785345 -62408319 - L2 LINE L2 -44 3228 3104 22 0 0 0 chr1 219785748 219785770 -62407894 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 219786032 219786061 -62407603 + AT_rich Low_complexity Low_complexity 1 29 0 302 48 0 0 chr1 219786237 219786279 -62407385 + L1PA2 LINE L1 6107 6148 -7 24 32 0 0 chr1 219786279 219786310 -62407354 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr1 219786470 219786499 -62407165 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chr1 219786630 219786690 -62406974 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr1 219787107 219787128 -62406536 + AT_rich Low_complexity Low_complexity 1 21 0 377 314 81 51 chr1 219787282 219787518 -62406146 + MIR SINE MIR 10 252 -10 231 36 0 0 chr1 219787641 219787669 -62405995 + (TG)n Simple_repeat Simple_repeat 2 29 0 216 204 37 0 chr1 219788082 219788136 -62405528 + L3b LINE CR1 1135 1190 -393 323 239 131 31 chr1 219788525 219788655 -62405009 - MIR SINE MIR 0 262 120 22 35 0 0 chr1 219788876 219788905 -62404759 + AT_rich Low_complexity Low_complexity 1 29 0 262 282 90 13 chr1 219789411 219789489 -62404175 - MER5A DNA MER1_type -38 151 68 214 233 17 17 chr1 219790302 219790362 -62403302 + CT-rich Low_complexity Low_complexity 2 61 0 272 244 26 35 chr1 219791333 219791448 -62402216 + GA-rich Low_complexity Low_complexity 3 116 0 1556 217 80 3 chr1 219791760 219792124 -62401540 - MSTD LTR MaLR 0 396 5 295 342 51 36 chr1 219792448 219792644 -62401020 - L2 LINE L2 -1 3312 3114 353 323 31 63 chr1 219792745 219792999 -62400665 - MIR SINE MIR -15 247 2 279 0 0 0 chr1 219793627 219793658 -62400006 + (TG)n Simple_repeat Simple_repeat 2 32 0 23 68 0 0 chr1 219797635 219797679 -62395985 + AT_rich Low_complexity Low_complexity 1 44 0 330 98 0 0 chr1 219798076 219798127 -62395537 + (TC)n Simple_repeat Simple_repeat 1 51 0 35 41 0 0 chr1 219799597 219799646 -62394018 + AT_rich Low_complexity Low_complexity 1 49 0 310 313 61 51 chr1 219800004 219800298 -62393366 + L1M4 LINE L1 4504 4800 -1346 654 191 52 48 chr1 219800519 219800750 -62392914 - Charlie5 DNA MER1_type 0 2623 2392 976 140 0 80 chr1 219800773 219800973 -62392691 - AluSg/x SINE Alu 0 312 129 226 300 54 58 chr1 219801397 219801674 -62391990 - L1MEd LINE L1 -5841 278 3 198 0 0 0 chr1 219803089 219803111 -62390553 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2129 92 0 4 chr1 219803113 219803394 -62390270 - AluSx SINE Alu -26 286 7 27 87 0 0 chr1 219803706 219803775 -62389889 + AT_rich Low_complexity Low_complexity 1 69 0 1203 290 78 17 chr1 219803906 219804705 -62388959 + L1MCa LINE L1 2115 2974 -3452 1112 217 50 0 chr1 219804693 219804951 -62388713 - L1MC3 LINE L1 -398 7387 7117 * 971 172 0 43 chr1 219804941 219805127 -62388537 - L1MC3 LINE L1 -960 6825 6648 * 740 142 64 73 chr1 219805176 219805395 -62388269 + L1MC3 LINE L1 7559 7775 -10 26 50 0 0 chr1 219805446 219805486 -62388178 + AT_rich Low_complexity Low_complexity 1 40 0 246 315 19 74 chr1 219805534 219805642 -62388022 + MLT1J2 LTR MaLR 39 140 -310 183 304 51 13 chr1 219806796 219806875 -62386789 - L2 LINE L2 0 3313 3232 665 268 24 6 chr1 219807029 219807197 -62386467 - MER45A DNA AcHobo 0 178 8 1301 149 159 23 chr1 219807986 219808288 -62385376 - MER61A LTR ERV1 0 343 1 4691 117 42 13 chr1 219808289 219808651 -62385013 - MER61A-int LTR ERV1 -1 5216 4866 1891 112 52 3 chr1 219808651 219808937 -62384727 + AluSc SINE Alu 1 300 -9 4691 117 42 13 chr1 219808937 219809328 -62384336 - MER61A-int LTR ERV1 -351 4866 4441 2070 142 0 6 chr1 219811498 219811809 -62381855 - AluSx SINE Alu -3 309 1 647 311 71 19 chr1 219811826 219812250 -62381414 + L1MEc LINE L1 908 1257 -4862 1145 64 7 0 chr1 219812253 219812393 -62381271 + AluSp SINE Alu 3 143 -170 249 296 91 0 chr1 219812501 219812589 -62381075 - L3 LINE CR1 -859 718 623 573 226 0 0 chr1 219812952 219813067 -62380597 + FLAM_C SINE Alu 6 120 -23 225 94 0 0 chr1 219813067 219813099 -62380565 + (TAA)n Simple_repeat Simple_repeat 2 33 0 861 308 4 4 chr1 219813282 219813519 -62380145 - MIR SINE MIR -6 256 20 436 62 77 0 chr1 219813920 219813985 -62379679 + MADE1 DNA Mariner 1 70 -10 25 0 0 0 chr1 219814038 219814063 -62379601 + AT_rich Low_complexity Low_complexity 1 25 0 215 204 0 0 chr1 219814476 219814520 -62379144 + (CA)n Simple_repeat Simple_repeat 2 45 0 198 0 0 0 chr1 219816383 219816405 -62377259 + (CA)n Simple_repeat Simple_repeat 1 22 0 389 165 89 0 chr1 219817580 219817659 -62376005 + MER101 LTR ERV1 389 474 0 1781 134 3 7 chr1 219817789 219818072 -62375592 - AluSg SINE Alu -28 282 1 308 148 16 0 chr1 219818773 219818834 -62374830 + (CA)n Simple_repeat Simple_repeat 2 63 0 22 70 0 0 chr1 219819209 219819252 -62374412 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr1 219819406 219819434 -62374230 + AT_rich Low_complexity Low_complexity 1 28 0 387 329 44 0 chr1 219819906 219820064 -62373600 - MIR3 SINE MIR -13 195 31 203 216 0 54 chr1 219820165 219820239 -62373425 + A-rich Low_complexity Low_complexity 3 72 0 23 54 0 0 chr1 219820529 219820566 -62373098 + AT_rich Low_complexity Low_complexity 1 37 0 208 200 22 0 chr1 219820736 219820810 -62372854 + (TA)n Simple_repeat Simple_repeat 1 75 0 210 128 0 0 chr1 219820820 219820859 -62372805 + (TC)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr1 219820938 219820964 -62372700 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr1 219821494 219821540 -62372124 + AT_rich Low_complexity Low_complexity 1 46 0 306 0 0 0 chr1 219821699 219821733 -62371931 + (TG)n Simple_repeat Simple_repeat 1 34 0 208 105 53 0 chr1 219822800 219822838 -62370826 + (TA)n Simple_repeat Simple_repeat 2 41 0 362 192 15 108 chr1 219823178 219823308 -62370356 + MER53 DNA DNA 1 118 -71 427 321 30 4 chr1 219823907 219824144 -62369520 - L1M4 LINE L1 -1070 5076 4834 23 0 0 0 chr1 219824181 219824204 -62369460 + AT_rich Low_complexity Low_complexity 1 23 0 1945 130 10 3 chr1 219825817 219826116 -62367548 + AluSx SINE Alu 1 301 -11 412 287 44 14 chr1 219826604 219826897 -62366767 + AluSq SINE Alu 1 302 -11 2391 62 7 3 chr1 219827242 219827550 -62366114 - AluSc SINE Alu 0 309 1 21 0 0 0 chr1 219827807 219827828 -62365836 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr1 219829341 219829390 -62364274 + AT_rich Low_complexity Low_complexity 1 49 0 230 206 15 0 chr1 219829468 219829536 -62364128 + (TA)n Simple_repeat Simple_repeat 2 70 0 201 241 17 0 chr1 219829537 219829595 -62364069 + (CAGA)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr1 219830592 219830615 -62363049 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 219830783 219830829 -62362835 + AT_rich Low_complexity Low_complexity 1 46 0 739 245 62 79 chr1 219831126 219831193 -62362471 + MIR SINE MIR 1 68 -194 1929 156 0 6 chr1 219831193 219831507 -62362157 + AluSx SINE Alu 1 312 0 739 245 62 79 chr1 219831507 219831680 -62361984 + MIR SINE MIR 68 237 -25 206 242 32 48 chr1 219831802 219831864 -62361800 + L3b LINE CR1 1512 1572 -11 284 140 237 21 chr1 219831971 219832064 -62361600 - L1MA9 LINE L1 -38 6274 6162 198 171 0 0 chr1 219833959 219834000 -62359664 + CT-rich Low_complexity Low_complexity 1 41 0 41 58 0 0 chr1 219834241 219834310 -62359354 + AT_rich Low_complexity Low_complexity 1 69 0 33 66 0 0 chr1 219834343 219834404 -62359260 + AT_rich Low_complexity Low_complexity 1 61 0 450 320 119 45 chr1 219834758 219835220 -62358444 + L2 LINE L2 2349 2844 -470 1840 141 42 0 chr1 219835960 219836244 -62357420 - AluSx SINE Alu -16 296 1 21 57 0 0 chr1 219838614 219838649 -62355015 + AT_rich Low_complexity Low_complexity 1 35 0 1886 183 50 42 chr1 219839367 219839848 -62353816 + MER31A LTR ERV1 1 485 0 302 275 30 61 chr1 219840735 219840866 -62352798 + L2 LINE L2 3187 3313 0 29 0 0 0 chr1 219840915 219840944 -62352720 + AT_rich Low_complexity Low_complexity 1 29 0 197 312 130 0 chr1 219841293 219841370 -62352294 + L2 LINE L2 3193 3279 -34 21 71 0 0 chr1 219842112 219842154 -62351510 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 219846491 219846512 -62347152 + AT_rich Low_complexity Low_complexity 1 21 0 266 352 56 0 chr1 219847467 219847592 -62346072 - MIR SINE MIR -87 175 44 234 0 0 0 chr1 219848107 219848133 -62345531 + (CA)n Simple_repeat Simple_repeat 2 27 0 208 250 0 0 chr1 219848433 219848477 -62345187 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 201 74 0 0 chr1 219848827 219848854 -62344810 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr1 219850577 219850598 -62343066 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr1 219851122 219851149 -62342515 + (T)n Simple_repeat Simple_repeat 1 27 0 426 39 0 0 chr1 219854002 219854054 -62339610 + (TC)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr1 219855243 219855268 -62338396 + AT_rich Low_complexity Low_complexity 1 25 0 180 111 0 0 chr1 219856411 219856438 -62337226 + (T)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr1 219856662 219856697 -62336967 + AT_rich Low_complexity Low_complexity 1 35 0 378 337 48 37 chr1 219856846 219857033 -62336631 - MIR3 SINE MIR -11 197 9 2024 102 14 14 chr1 219857284 219857569 -62336095 + AluSc SINE Alu 7 291 -18 309 51 0 0 chr1 219857569 219857608 -62336056 + (TA)n Simple_repeat Simple_repeat 1 39 0 1025 144 0 6 chr1 219857619 219857799 -62335865 + (TA)n Simple_repeat Simple_repeat 2 180 0 2092 131 0 0 chr1 219858573 219858871 -62334793 + AluSx SINE Alu 1 298 -14 324 242 8 105 chr1 219858939 219859063 -62334601 + L2 LINE L2 3201 3312 -1 1158 234 62 81 chr1 219859384 219859756 -62333908 - MLT1A2 LTR MaLR 0 374 10 1707 196 136 16 chr1 219860280 219860730 -62332934 + MLT1D LTR MaLR 1 504 -1 1550 214 3 3 chr1 219860874 219861164 -62332500 + AluJb SINE Alu 1 290 -22 182 138 0 0 chr1 219861985 219862014 -62331650 - L2 LINE L2 -8 3305 3277 230 310 80 0 chr1 219862365 219862465 -62331199 + MER102a DNA MER1_type 214 321 -9 1509 191 43 16 chr1 219862608 219862912 -62330752 + AluJb SINE Alu 1 312 0 615 245 55 0 chr1 219863085 219863202 -62330462 - MLT1J2 LTR MaLR -243 207 77 432 55 0 0 chr1 219863202 219863257 -62330407 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 615 245 55 0 chr1 219863257 219863302 -62330362 - MLT1J2 LTR MaLR -373 77 36 249 313 16 0 chr1 219863516 219863580 -62330084 + L2 LINE L2 3249 3313 0 2836 205 52 28 chr1 219863633 219864719 -62328945 + L1MC2 LINE L1 4923 6029 -315 2154 319 55 22 chr1 219864731 219865673 -62327991 + L2 LINE L2 1921 2893 -421 27 0 0 0 chr1 219866647 219866674 -62326990 + AT_rich Low_complexity Low_complexity 1 27 0 39 74 0 0 chr1 219867281 219867362 -62326302 + AT_rich Low_complexity Low_complexity 1 81 0 26 50 0 0 chr1 219867869 219867909 -62325755 + AT_rich Low_complexity Low_complexity 1 40 0 1371 214 39 47 chr1 219868346 219868705 -62324959 - MLT1A2 LTR MaLR 0 374 19 25 65 0 0 chr1 219868977 219869023 -62324641 + AT_rich Low_complexity Low_complexity 1 46 0 624 353 124 40 chr1 219869623 219870331 -62323333 + L2 LINE L2 2208 2975 -339 220 212 15 30 chr1 219871081 219871147 -62322517 + (TA)n Simple_repeat Simple_repeat 2 66 0 1156 255 111 13 chr1 219871171 219871827 -62321837 - L1M4 LINE L1 -1714 4432 3706 29 28 0 0 chr1 219872620 219872656 -62321008 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr1 219872681 219872719 -62320945 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 219874015 219874036 -62319628 + AT_rich Low_complexity Low_complexity 1 21 0 254 344 20 15 chr1 219874063 219874191 -62319473 + MIR SINE MIR 2 125 -83 183 42 0 0 chr1 219875027 219875051 -62318613 + (CAA)n Simple_repeat Simple_repeat 1 24 0 2982 151 25 25 chr1 219875167 219875692 -62317972 + MER1A DNA MER1_type 3 527 0 208 275 9 9 chr1 219875741 219875824 -62317840 + GA-rich Low_complexity Low_complexity 2 87 -23 204 40 0 0 chr1 219875824 219875849 -62317815 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 275 9 9 chr1 219875849 219875874 -62317790 + GA-rich Low_complexity Low_complexity 86 110 0 22 0 0 0 chr1 219876014 219876036 -62317628 + AT_rich Low_complexity Low_complexity 1 22 0 294 282 41 41 chr1 219876371 219876566 -62317098 + L1M4 LINE L1 2202 2396 -3750 1729 200 70 27 chr1 219876604 219877049 -62316615 - MER31B LTR ERV1 0 466 3 30 69 0 0 chr1 219877896 219877954 -62315710 + AT_rich Low_complexity Low_complexity 1 58 0 836 49 42 106 chr1 219878341 219878483 -62315181 - AluSg/x SINE Alu -11 299 167 6510 76 4 0 chr1 219879705 219880682 -62312982 - L1PA7 LINE L1 0 6154 5171 8587 102 19 1 chr1 219880682 219881906 -62311758 - L1P3 LINE L1 -4977 1484 239 200 390 40 35 chr1 219882768 219882996 -62310668 - L2 LINE L2 -1262 2052 1824 663 252 39 1 chr1 219882998 219883205 -62310459 + L1MD3 LINE L1 7559 7984 -11 607 274 32 23 chr1 219883294 219883513 -62310151 + L1MC4a LINE L1 6383 6603 -1205 253 209 0 90 chr1 219883655 219883722 -62309942 - L1MC4 LINE L1 -1278 6764 6704 216 0 0 0 chr1 219883808 219883832 -62309832 + (TG)n Simple_repeat Simple_repeat 2 25 0 434 211 16 47 chr1 219883838 219883966 -62309698 + L1MC4 LINE L1 7919 8042 0 21 36 0 0 chr1 219884015 219884043 -62309621 + AT_rich Low_complexity Low_complexity 1 28 0 662 294 38 25 chr1 219884109 219884344 -62309320 - MIR SINE MIR 0 262 25 21 0 0 0 chr1 219884594 219884615 -62309049 + AT_rich Low_complexity Low_complexity 1 21 0 257 235 0 29 chr1 219884950 219884956 -62308708 + (TATG)n Simple_repeat Simple_repeat 2 7 -60 1571 196 0 21 chr1 219884956 219885247 -62308417 + AluJb SINE Alu 1 285 -27 257 235 0 29 chr1 219885247 219885308 -62308356 + (TATG)n Simple_repeat Simple_repeat 7 67 0 22 0 0 0 chr1 219885411 219885433 -62308231 + AT_rich Low_complexity Low_complexity 1 22 0 583 178 25 17 chr1 219885986 219886104 -62307560 + FLAM_A SINE Alu 1 119 -14 237 65 0 0 chr1 219887218 219887249 -62306415 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 203 242 0 30 chr1 219888000 219888066 -62305598 + A-rich Low_complexity Low_complexity 2 65 0 25 23 0 23 chr1 219888287 219888311 -62305353 + AT_rich Low_complexity Low_complexity 1 25 -17 2114 82 23 39 chr1 219888311 219888616 -62305048 - AluY SINE Alu -11 300 1 25 23 0 23 chr1 219888616 219888634 -62305030 + AT_rich Low_complexity Low_complexity 25 42 0 1315 287 52 68 chr1 219889647 219890132 -62303532 + MLT1H LTR MaLR 67 543 -6 703 215 0 38 chr1 219890198 219890299 -62303365 - MLT1A1 LTR MaLR -202 163 69 1741 168 68 50 chr1 219890299 219890723 -62302941 + MSTB1 LTR MaLR 1 432 0 703 215 0 38 chr1 219890723 219890779 -62302885 - MLT1A1 LTR MaLR -296 69 12 30 27 0 0 chr1 219891078 219891115 -62302549 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 219891976 219892005 -62301659 + AT_rich Low_complexity Low_complexity 1 29 0 479 321 142 46 chr1 219893351 219893804 -62299860 + L2 LINE L2 2702 3197 -116 6301 147 38 34 chr1 219893893 219894946 -62298718 + Tigger3b DNA MER2_type 1 1063 -1965 2113 82 3 7 chr1 219894946 219895257 -62298407 + AluY SINE Alu 1 310 0 6301 147 38 34 chr1 219895257 219895427 -62298237 + Tigger3b DNA MER2_type 1063 1231 0 22 80 0 0 chr1 219895585 219895635 -62298029 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 219895696 219895718 -62297946 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 219895855 219895882 -62297782 + AT_rich Low_complexity Low_complexity 1 27 0 186 43 0 0 chr1 219896123 219896146 -62297518 + (A)n Simple_repeat Simple_repeat 1 23 0 309 109 0 0 chr1 219896865 219896911 -62296753 + (TG)n Simple_repeat Simple_repeat 2 47 0 281 231 35 6 chr1 219896916 219897085 -62296579 + (TA)n Simple_repeat Simple_repeat 2 175 0 21 0 0 0 chr1 219897334 219897355 -62296309 + AT_rich Low_complexity Low_complexity 1 21 0 2005 84 63 3 chr1 219899593 219899880 -62293784 - AluY SINE Alu -7 304 1 239 353 43 54 chr1 219900393 219900671 -62292993 + L2 LINE L2 2480 2754 -560 28 0 0 0 chr1 219901392 219901420 -62292244 + AT_rich Low_complexity Low_complexity 1 28 0 280 153 34 0 chr1 219901706 219901765 -62291899 + MER4-int LTR ERV1 1103 1163 -5435 2020 160 88 5 chr1 219903555 219903929 -62289735 - MSTA LTR MaLR -8 420 16 1242 242 17 7 chr1 219905241 219905538 -62288126 - AluJo SINE Alu -12 300 1 1612 187 0 0 chr1 219906821 219907094 -62286570 + AluJb SINE Alu 30 302 -10 21 0 0 0 chr1 219907217 219907238 -62286426 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 219908440 219908465 -62285199 + AT_rich Low_complexity Low_complexity 1 25 0 302 299 34 45 chr1 219908848 219909025 -62284639 + L1ME1 LINE L1 701 875 -5667 2986 288 119 38 chr1 219909149 219910948 -62282716 + L1ME1 LINE L1 1096 2748 -3896 306 0 0 0 chr1 219910948 219910982 -62282682 + (CA)n Simple_repeat Simple_repeat 2 35 0 2986 288 119 38 chr1 219910982 219911629 -62282035 + L1ME1 LINE L1 2748 3341 -3303 333 0 0 0 chr1 219911629 219911666 -62281998 + (CA)n Simple_repeat Simple_repeat 2 38 0 2986 288 119 38 chr1 219911666 219912470 -62281194 + L1ME1 LINE L1 3341 4615 -2029 1082 214 5 0 chr1 219912470 219912690 -62280974 + Tigger2 DNA MER2_type 1 221 -2497 604 231 7 20 chr1 219912683 219912830 -62280834 + Tigger2 DNA MER2_type 2573 2717 -1 * 572 302 29 29 chr1 219912830 219913145 -62280519 + L1ME1 LINE L1 4613 4927 -1717 572 290 164 3 chr1 219913180 219913497 -62280167 + L1ME1 LINE L1 6284 6651 -13 210 158 0 0 chr1 219913511 219913549 -62280115 + A-rich Low_complexity Low_complexity 1 38 0 191 224 41 0 chr1 219913791 219913840 -62279824 + L2 LINE L2 3263 3313 0 29 84 0 0 chr1 219914179 219914250 -62279414 + AT_rich Low_complexity Low_complexity 1 71 0 183 42 0 0 chr1 219915208 219915232 -62278432 + (CA)n Simple_repeat Simple_repeat 2 25 0 1693 163 34 25 chr1 219915796 219916121 -62277543 + MER41B LTR ERV1 220 547 -88 2199 131 11 3 chr1 219917271 219917629 -62276035 - L1PB1 LINE L1 0 6151 5791 558 0 0 0 chr1 219917629 219917691 -62275973 + (TA)n Simple_repeat Simple_repeat 1 62 0 357 24 0 0 chr1 219917690 219917732 -62275932 + (CA)n Simple_repeat Simple_repeat 2 43 0 * 236 192 0 0 chr1 219917771 219917823 -62275841 + (TA)n Simple_repeat Simple_repeat 2 53 0 4028 181 16 4 chr1 219917829 219918466 -62275198 - L1PB1 LINE L1 -362 5789 5161 1894 142 7 3 chr1 219918466 219918761 -62274903 - AluSx SINE Alu -16 296 1 4028 181 16 4 chr1 219918761 219919491 -62274173 - L1PB1 LINE L1 -990 5161 4405 2709 128 81 86 chr1 219919491 219920093 -62273571 - Tigger1 DNA MER2_type -1765 653 55 301 109 18 60 chr1 219920107 219920170 -62273494 + Alu SINE Alu 238 290 -12 402 305 6 67 chr1 219920170 219920334 -62273330 - L2 LINE L2 -18 3295 3142 1126 177 81 0 chr1 219920344 219920553 -62273111 - AluSx SINE Alu -86 226 1 321 393 7 7 chr1 219920596 219920731 -62272933 + L2 LINE L2 3138 3272 0 203 152 0 0 chr1 219920959 219920992 -62272672 + CT-rich Low_complexity Low_complexity 2 34 0 376 303 53 8 chr1 219921367 219921499 -62272165 - MLT1J1 LTR MaLR -288 158 21 22 56 0 0 chr1 219922268 219922304 -62271360 + AT_rich Low_complexity Low_complexity 1 36 0 452 293 0 0 chr1 219922808 219922914 -62270750 - MER33 DNA MER1_type -212 112 7 181 333 0 0 chr1 219923270 219923315 -62270349 - L2 LINE L2 -1573 1741 1697 859 204 63 0 chr1 219924148 219924339 -62269325 - MER3 DNA MER1_type -6 203 1 1863 206 18 107 chr1 219926536 219926673 -62266991 - MER67D LTR ERV1 -4 510 362 1413 123 0 9 chr1 219926673 219926901 -62266763 - L1PA13 LINE L1 -15 6148 5923 1863 206 18 107 chr1 219926901 219927317 -62266347 - MER67D LTR ERV1 -152 362 6 2644 210 90 53 chr1 219927365 219928236 -62265428 - L1MC4a LINE L1 0 7808 6906 276 245 149 11 chr1 219928570 219928664 -62265000 - MLT1J2 LTR MaLR -308 142 36 246 312 14 80 chr1 219928969 219929107 -62264557 + L2 LINE L2 3183 3311 -2 24 67 0 0 chr1 219929217 219929262 -62264402 + AT_rich Low_complexity Low_complexity 1 45 0 529 312 123 22 chr1 219929451 219929757 -62263907 + MLT1F1 LTR MaLR 1 292 -298 541 264 13 26 chr1 219929783 219929938 -62263726 + MLT1F1 LTR MaLR 386 538 -29 513 292 52 49 chr1 219929940 219930228 -62263436 + L2 LINE L2 3021 3309 -4 6647 79 3 0 chr1 219930268 219931867 -62261797 + L1PA7 LINE L1 4549 6154 0 2055 174 30 39 chr1 219933766 219934202 -62259462 + MSTB1 LTR MaLR 1 432 0 1366 218 67 79 chr1 219934407 219934912 -62258752 - MLT1D LTR MaLR 0 505 7 1735 119 31 34 chr1 219935021 219935314 -62258350 + AluSg SINE Alu 1 292 -18 256 238 56 91 chr1 219936570 219936713 -62256951 + L1ME LINE L1 5614 5751 -370 252 375 73 26 chr1 219936719 219936951 -62256713 + L2 LINE L2 2629 2871 -443 527 369 59 22 chr1 219936978 219937349 -62256315 + L2 LINE L2 2927 3311 -2 423 230 10 10 chr1 219937909 219938009 -62255655 + LTR28 LTR ERV1 1 100 -920 2257 198 90 86 chr1 219938077 219938828 -62254836 + LTR28 LTR ERV1 119 1020 0 1133 167 10 5 chr1 219939252 219939450 -62254214 - Tigger2 DNA MER2_type -4 2714 2516 228 184 82 0 chr1 219939446 219939495 -62254169 + MLT1F1 LTR MaLR 543 595 0 * 4275 143 26 22 chr1 219939605 219940359 -62253305 - Tigger2 DNA MER2_type -1961 757 1 744 121 30 0 chr1 219940740 219940872 -62252792 + L1PA14 LINE L1 6025 6160 -1 713 167 6 69 chr1 219941549 219941723 -62251941 + FRAM SINE Alu 1 163 -3 25 0 0 0 chr1 219941812 219941837 -62251827 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr1 219942224 219942266 -62251398 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 219942372 219942393 -62251271 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr1 219942701 219942743 -62250921 + (TG)n Simple_repeat Simple_repeat 2 43 0 3123 213 39 25 chr1 219943529 219943846 -62249818 - L1MA9 LINE L1 -38 6274 5963 272 70 23 0 chr1 219943846 219943889 -62249775 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 3123 213 39 25 chr1 219943889 219944401 -62249263 - L1MA9 LINE L1 -349 5963 5434 1321 209 11 7 chr1 219944409 219944686 -62248978 - AluJo SINE Alu -24 288 11 2112 222 193 50 chr1 219944704 219945162 -62248502 - L1MA9 LINE L1 -743 5403 5012 304 75 0 0 chr1 219945162 219945202 -62248462 - Alu SINE Alu -262 40 1 2112 222 193 50 chr1 219945202 219945823 -62247841 - L1MA9 LINE L1 -1134 5012 4124 713 226 95 12 chr1 219945792 219946035 -62247629 - L1MA9 LINE L1 -2667 3479 3217 * 23 0 0 0 chr1 219946374 219946397 -62247267 + AT_rich Low_complexity Low_complexity 1 23 0 709 138 51 22 chr1 219946449 219946587 -62247077 - L1MB1 LINE L1 -6 6162 6021 2880 178 25 17 chr1 219946589 219947191 -62246473 - L1MB1 LINE L1 -279 5889 5283 1697 199 34 84 chr1 219947205 219947647 -62246017 + MSTC LTR MaLR 9 428 0 599 218 0 62 chr1 219947647 219947840 -62245824 - L1MB1 LINE L1 -873 5273 5093 * 925 274 80 0 chr1 219947838 219948112 -62245552 + L1MB1 LINE L1 4792 5087 -1059 2055 187 23 46 chr1 219948578 219949055 -62244609 - MLT1C LTR MaLR -1 466 1 658 297 63 63 chr1 219949123 219949550 -62244114 - L2 LINE L2 -640 2674 2248 854 301 137 13 chr1 219949845 219950240 -62243424 + L2 LINE L2 2862 3305 -8 28 29 0 0 chr1 219950959 219950994 -62242670 + AT_rich Low_complexity Low_complexity 1 35 0 275 104 21 0 chr1 219952327 219952375 -62241289 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 221 224 0 0 chr1 219953270 219953319 -62240345 - L2 LINE L2 -4 3268 3220 322 369 52 24 chr1 219953592 219953844 -62239820 - MIR SINE MIR -3 259 1 39 38 0 0 chr1 219953922 219953975 -62239689 + AT_rich Low_complexity Low_complexity 1 53 0 1631 116 26 4 chr1 219955395 219955663 -62238001 - L1MA2 LINE L1 0 6304 6031 276 169 0 0 chr1 219955822 219955860 -62237804 + (TG)n Simple_repeat Simple_repeat 2 42 -24 249 108 0 0 chr1 219955860 219955897 -62237767 + (TA)n Simple_repeat Simple_repeat 1 37 0 276 169 0 0 chr1 219955897 219955923 -62237741 + (TG)n Simple_repeat Simple_repeat 41 66 0 1812 161 120 38 chr1 219957074 219957594 -62236070 - MLT2A2 LTR ERVL 0 554 1 2259 156 71 2 chr1 219958498 219958965 -62234699 + L1MA7 LINE L1 5787 6285 -6 22 0 0 0 chr1 219958965 219958987 -62234677 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 219959049 219959072 -62234592 + AT_rich Low_complexity Low_complexity 1 23 0 2342 33 0 0 chr1 219959088 219959363 -62234301 - AluY SINE Alu -13 298 24 4736 136 19 6 chr1 219959367 219959735 -62233929 - L1MA4A LINE L1 -30 6273 5906 931 290 51 25 chr1 219959735 219960225 -62233439 - L1MC4a LINE L1 -1913 5895 5393 180 0 0 0 chr1 219960684 219960704 -62232960 + (TAA)n Simple_repeat Simple_repeat 2 21 0 26 64 0 0 chr1 219961004 219961051 -62232613 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr1 219961994 219962027 -62231637 + AT_rich Low_complexity Low_complexity 1 33 0 258 321 38 19 chr1 219962215 219962321 -62231343 - MIR SINE MIR 0 262 155 21 0 0 0 chr1 219962612 219962633 -62231031 + AT_rich Low_complexity Low_complexity 1 21 0 251 270 20 30 chr1 219963686 219963786 -62229878 + (TATG)n Simple_repeat Simple_repeat 2 100 0 210 217 0 33 chr1 219963759 219963787 -62229877 + (TCTA)n Simple_repeat Simple_repeat 1 28 -30 * 2154 169 48 14 chr1 219963787 219964201 -62229463 - MSTA LTR MaLR 0 428 1 210 217 0 33 chr1 219964201 219964232 -62229432 + (TCTA)n Simple_repeat Simple_repeat 28 58 0 429 328 67 8 chr1 219964817 219965055 -62228609 + MER41B LTR ERV1 179 430 -205 2751 176 19 64 chr1 219966114 219966755 -62226909 - LTR9 LTR ERV1 0 612 1 3967 180 55 31 chr1 219967800 219967966 -62225698 + LOR1-int LTR ERV1 786 947 -839 4148 202 25 22 chr1 219967966 219968950 -62224714 + LTR57-int LTR ERVL 608 1594 -3749 3967 180 55 31 chr1 219968950 219969096 -62224568 + LOR1-int LTR ERV1 947 1777 -9 873 234 105 63 chr1 219969099 219969411 -62224253 + LOR1-int LTR ERV1 1936 2276 -4482 1891 177 0 3 chr1 219969411 219969722 -62223942 + AluSx SINE Alu 1 310 -2 873 234 105 63 chr1 219969722 219969884 -62223780 + LOR1-int LTR ERV1 2276 2430 -4328 869 319 60 29 chr1 219971154 219971603 -62222061 + LTR33 LTR ERVL 59 521 0 285 266 0 0 chr1 219971603 219971667 -62221997 - MIR SINE MIR -181 81 18 2047 101 7 26 chr1 219972738 219973045 -62220619 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr1 219973589 219973617 -62220047 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr1 219973840 219973874 -62219790 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr1 219974242 219974267 -62219397 + AT_rich Low_complexity Low_complexity 1 25 0 388 327 23 45 chr1 219974739 219974959 -62218705 - L2 LINE L2 0 3313 3099 945 285 22 52 chr1 219975035 219975438 -62218226 - MLT2C1 LTR ERVL -6 391 1 1258 302 162 19 chr1 219975440 219975540 -62218124 - L2 LINE L2 -338 2976 2892 1455 202 84 32 chr1 219975540 219975887 -62217777 - MLT1A1 LTR MaLR 0 365 1 1258 302 162 19 chr1 219975887 219976478 -62217186 - L2 LINE L2 -422 2892 2186 221 323 31 0 chr1 219978756 219978821 -62214843 + MIR3 SINE MIR 139 205 -3 2300 150 39 2 chr1 219978836 219979249 -62214415 + MSTA LTR MaLR 1 428 0 1047 135 0 0 chr1 219979468 219979638 -62214026 + (TA)n Simple_repeat Simple_repeat 1 170 0 2020 117 0 7 chr1 219979640 219979931 -62213733 - AluSq SINE Alu -19 294 6 389 337 42 12 chr1 219980072 219980238 -62213426 + MIR SINE MIR 52 222 -40 862 181 66 88 chr1 219980435 219980821 -62212843 + L1PB4 LINE L1 5631 5942 -224 532 266 0 0 chr1 219980822 219980931 -62212733 + FLAM_C SINE Alu 3 111 -32 2414 60 0 19 chr1 219981783 219982100 -62211564 + AluY SINE Alu 1 311 0 431 283 48 7 chr1 219982328 219982473 -62211191 - LTR16A1 LTR ERVL -130 327 177 1808 166 7 7 chr1 219983084 219983374 -62210290 + AluSx SINE Alu 1 290 -22 312 240 34 75 chr1 219983672 219983818 -62209846 - L1 LINE L1 -965 5181 5042 6084 63 4 0 chr1 219983824 219984633 -62209031 + L1PA5 LINE L1 5356 6167 0 1523 238 24 9 chr1 219984648 219985072 -62208592 + L1 LINE L1 3204 3633 -2513 720 258 182 25 chr1 219985072 219985347 -62208317 + MSTD LTR MaLR 79 396 0 243 196 20 0 chr1 219985807 219985858 -62207806 + CT-rich Low_complexity Low_complexity 1 52 0 1630 157 20 3 chr1 219987574 219987868 -62205796 + L1MA8 LINE L1 5993 6291 0 1513 213 17 3 chr1 219989198 219989499 -62204165 - AluJo SINE Alu -7 305 1 279 191 157 11 chr1 219989731 219989820 -62203844 + MIR SINE MIR 86 187 -75 1949 133 59 31 chr1 219989824 219990178 -62203486 - THE1B LTR MaLR 0 364 1 9427 121 7 8 chr1 219990178 219991558 -62202106 - THE1B-int LTR MaLR 0 1580 202 2000 125 50 61 chr1 219991559 219991919 -62201745 - THE1B LTR MaLR -8 356 1 8033 115 33 28 chr1 219992050 219993331 -62200333 - HSMAR1 DNA Mariner 0 1287 1 180 250 94 0 chr1 219995244 219995308 -62198356 + MIR SINE MIR 128 197 -65 379 312 0 35 chr1 219995424 219995565 -62198099 + L2 LINE L2 2926 3061 -252 1103 171 46 112 chr1 219995579 219995921 -62197743 + AluJb SINE Alu 1 322 0 871 183 51 6 chr1 219996204 219996379 -62197285 - MLT1A2 LTR MaLR 0 374 192 889 203 28 0 chr1 219996447 219996629 -62197035 - MLT1A2 LTR MaLR -187 187 1 207 0 0 0 chr1 219996658 219996681 -62196983 + (TG)n Simple_repeat Simple_repeat 2 24 0 28 0 0 0 chr1 219996840 219996868 -62196796 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 219997186 219997216 -62196448 + AT_rich Low_complexity Low_complexity 1 30 0 2004 115 0 3 chr1 219997444 219997730 -62195934 + AluSq SINE Alu 1 285 -28 382 39 0 0 chr1 219997730 219997782 -62195882 - L1PA4 LINE L1 -167 5988 5937 1214 68 0 28 chr1 219997782 219997952 -62195712 + L1PA4 LINE L1 5985 6155 0 243 0 0 0 chr1 219997961 219997988 -62195676 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2047 137 3 6 chr1 219998433 219998746 -62194918 - AluSx SINE Alu 0 312 1 1776 255 93 135 chr1 219998765 220000035 -62193629 - L1MC4 LINE L1 -3 8039 6718 1883 153 7 0 chr1 220000035 220000336 -62193328 + AluSq SINE Alu 1 303 -10 1776 255 93 135 chr1 220000336 220000735 -62192929 - L1MC4 LINE L1 -1324 6718 6304 423 0 0 0 chr1 220000735 220000782 -62192882 + (CA)n Simple_repeat Simple_repeat 2 48 0 1776 255 93 135 chr1 220000782 220001579 -62192085 - L1MC4 LINE L1 -1738 6304 5605 797 208 50 23 chr1 220001587 220001930 -62191734 + MLT1B LTR MaLR 3 390 0 872 289 46 33 chr1 220001945 220002633 -62191031 - L1MC4 LINE L1 -838 5308 4895 23 0 0 0 chr1 220002703 220002726 -62190938 + AT_rich Low_complexity Low_complexity 1 23 0 3081 160 26 0 chr1 220002727 220003313 -62190351 - L1MA2 LINE L1 0 6304 5704 1525 119 16 12 chr1 220003313 220003615 -62190049 - L1MA2 LINE L1 -744 5402 5196 * 13446 178 28 31 chr1 220003612 220005643 -62188021 - L1 LINE L1 -880 6685 4650 180 0 0 0 chr1 220005643 220005663 -62188001 + (TC)n Simple_repeat Simple_repeat 1 20 0 13446 178 28 31 chr1 220005663 220007554 -62186110 - L1 LINE L1 -2915 4650 2731 225 65 0 0 chr1 220007554 220007585 -62186079 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 13446 178 28 31 chr1 220007585 220009091 -62184573 - L1 LINE L1 -4834 2731 1222 1538 199 0 0 chr1 220009081 220009332 -62184332 + L1M1 LINE L1 354 604 -6961 * 6452 218 33 2 chr1 220009297 220010520 -62183144 - L1 LINE L1 -6292 1273 13 23 33 0 0 chr1 220010959 220010989 -62182675 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr1 220011309 220011358 -62182306 + AT_rich Low_complexity Low_complexity 1 49 0 27 96 0 0 chr1 220011386 220011469 -62182195 + AT_rich Low_complexity Low_complexity 1 83 0 3446 143 39 10 chr1 220013724 220014317 -62179347 + L1PA15 LINE L1 5555 6164 -1 1630 105 21 0 chr1 220015049 220015288 -62178376 + L1MA1 LINE L1 6055 6298 -4 21 0 0 0 chr1 220015307 220015328 -62178336 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 220016208 220016229 -62177435 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr1 220016380 220016411 -62177253 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 342 67 0 0 chr1 220016443 220016488 -62177176 + (CA)n Simple_repeat Simple_repeat 2 46 0 374 23 0 0 chr1 220017915 220017959 -62175705 - tRNA-Met-e tRNA tRNA -31 44 1 293 412 32 5 chr1 220018851 220019038 -62174626 - MIR SINE MIR -60 202 11 5995 173 43 8 chr1 220019251 220020440 -62173224 - Tigger3b DNA MER2_type -1 1230 1 685 252 0 7 chr1 220020773 220020920 -62172744 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr1 220020920 220020942 -62172722 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 2623 42 0 0 chr1 220021246 220021557 -62172107 - AluY SINE Alu 0 311 1 202 407 26 31 chr1 220021838 220022032 -62171632 + L3 LINE CR1 914 1106 -471 2125 144 37 17 chr1 220022563 220022918 -62170746 + THE1B LTR MaLR 1 362 -2 22 35 0 0 chr1 220023582 220023611 -62170053 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr1 220023819 220023854 -62169810 + AT_rich Low_complexity Low_complexity 1 35 0 1212 96 0 0 chr1 220024272 220024449 -62169215 + (TTCC)n Simple_repeat Simple_repeat 2 178 0 454 186 35 12 chr1 220024476 220024648 -62169016 + CT-rich Low_complexity Low_complexity 2 177 0 469 180 48 1 chr1 220025060 220025166 -62168498 + L1M4 LINE L1 4681 4790 -1356 2326 71 3 0 chr1 220025180 220025462 -62168202 - AluY SINE Alu -20 291 9 3534 252 35 39 chr1 220025594 220026842 -62166822 + L1ME3A LINE L1 3968 5211 -935 4816 180 28 14 chr1 220026879 220028381 -62165283 + L1MA7 LINE L1 4760 6282 -9 28 0 0 0 chr1 220028408 220028436 -62165228 + AT_rich Low_complexity Low_complexity 1 28 0 32 75 0 0 chr1 220030549 220030616 -62163048 + AT_rich Low_complexity Low_complexity 1 67 0 2195 171 16 39 chr1 220030962 220031448 -62162216 - L1MA7 LINE L1 -17 6274 5800 314 91 36 0 chr1 220031452 220031507 -62162157 - AluJb SINE Alu 0 300 244 547 161 336 0 chr1 220031507 220031644 -62162020 - AluJb SINE Alu -98 214 32 998 192 6 0 chr1 220031644 220031826 -62161838 - L1 LINE L1 -2360 3786 3604 * 2565 227 69 6 chr1 220031823 220032604 -62161060 + L1 LINE L1 2490 3319 -2827 21 0 0 0 chr1 220032643 220032664 -62161000 + AT_rich Low_complexity Low_complexity 1 21 0 360 315 30 25 chr1 220033085 220033282 -62160382 - L1M4 LINE L1 -1139 5007 4810 180 217 0 0 chr1 220033310 220033356 -62160308 + (TA)n Simple_repeat Simple_repeat 1 46 0 378 298 79 11 chr1 220033451 220033629 -62160035 + L1ME3A LINE L1 5418 5607 -563 575 214 0 0 chr1 220033629 220033732 -62159932 - Tigger7 DNA MER2_type 0 2491 2389 * 1148 263 8 8 chr1 220033727 220033986 -62159678 - Tigger7 DNA MER2_type -2220 267 9 322 302 107 57 chr1 220034001 220034309 -62159355 + L1ME3A LINE L1 5614 5956 -214 1946 104 18 0 chr1 220034309 220034587 -62159077 + AluSg SINE Alu 3 285 -25 322 302 107 57 chr1 220034587 220034755 -62158909 + L1ME3A LINE L1 5956 6114 -56 208 143 0 0 chr1 220036370 220036405 -62157259 + (A)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr1 220036512 220036536 -62157128 + AT_rich Low_complexity Low_complexity 1 24 0 323 261 170 7 chr1 220036789 220036942 -62156722 + MIR SINE MIR 81 258 -4 21 57 0 0 chr1 220038413 220038448 -62155216 + AT_rich Low_complexity Low_complexity 1 35 0 463 304 58 0 chr1 220038739 220038877 -62154787 + MIR SINE MIR 93 238 -24 789 312 124 31 chr1 220038918 220039498 -62154166 - L2 LINE L2 0 3313 2665 722 313 154 36 chr1 220039539 220040098 -62153566 - L2 LINE L2 -1893 1421 797 213 357 31 51 chr1 220040270 220040368 -62153296 - MIR3 SINE MIR -21 187 92 22 0 0 0 chr1 220040609 220040631 -62153033 + AT_rich Low_complexity Low_complexity 1 22 0 231 303 42 84 chr1 220041346 220041420 -62152244 - MLT1E LTR MaLR -341 252 183 2383 65 7 3 chr1 220041420 220041730 -62151934 - AluY SINE Alu 0 311 1 231 303 42 84 chr1 220041730 220041774 -62151890 - MLT1E LTR MaLR -410 183 139 21 36 0 0 chr1 220042061 220042089 -62151575 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr1 220042145 220042195 -62151469 + AT_rich Low_complexity Low_complexity 1 50 0 581 159 18 0 chr1 220042233 220042346 -62151318 + L1PA6 LINE L1 6035 6149 -5 29 78 0 0 chr1 220043317 220043381 -62150283 + AT_rich Low_complexity Low_complexity 1 64 0 3108 112 30 0 chr1 220043848 220044287 -62149377 - MLT2A2 LTR ERVL 0 453 2 38050 98 15 1 chr1 220044288 220049792 -62143872 - HERVL-A2 LTR ERVL 0 5654 2 3018 110 32 0 chr1 220049793 220050231 -62143433 - MLT2A2 LTR ERVL 0 453 2 1316 164 173 15 chr1 220051353 220051677 -62141987 + THE1C LTR MaLR 1 375 0 2065 122 0 3 chr1 220051770 220052057 -62141607 - AluSx SINE Alu -16 296 11 251 256 250 17 chr1 220052422 220052594 -62141070 - MIR SINE MIR -42 220 9 281 248 41 13 chr1 220052828 220052917 -62140747 - HsTC2 DNA Tc2 -87 1811 1 604 172 17 0 chr1 220053835 220053951 -62139713 - FLAM_C SINE Alu -25 118 1 24 0 0 0 chr1 220054619 220054643 -62139021 + AT_rich Low_complexity Low_complexity 1 24 0 209 269 77 26 chr1 220054880 220054958 -62138706 - L2 LINE L2 0 3272 3191 203 377 75 6 chr1 220055541 220055700 -62137964 + MIR SINE MIR 28 197 -65 1248 236 93 48 chr1 220055827 220056310 -62137354 - MLT1D LTR MaLR 0 505 1 21 71 0 0 chr1 220056524 220056566 -62137098 + AT_rich Low_complexity Low_complexity 1 42 0 383 317 25 86 chr1 220056684 220057009 -62136655 + L1MEd LINE L1 872 1176 -4943 283 312 28 9 chr1 220057056 220057165 -62136499 - L2 LINE L2 -431 2883 2773 455 270 36 40 chr1 220057580 220057802 -62135862 - L1M4 LINE L1 -936 5210 4990 2510 260 80 17 chr1 220057803 220058703 -62134961 - L1M4 LINE L1 -1922 4224 3239 441 0 0 0 chr1 220058703 220058752 -62134912 + (TG)n Simple_repeat Simple_repeat 2 50 0 2510 260 80 17 chr1 220058752 220058971 -62134693 - L1M4 LINE L1 -2907 3239 3035 339 287 9 9 chr1 220058977 220059085 -62134579 - L1MCb LINE L1 -5872 173 66 37 23 0 0 chr1 220059555 220059599 -62134065 + AT_rich Low_complexity Low_complexity 1 44 0 24 67 0 0 chr1 220060462 220060507 -62133157 + AT_rich Low_complexity Low_complexity 1 45 0 479 328 39 27 chr1 220060559 220060818 -62132846 - MIR SINE MIR 0 262 1 21 36 0 0 chr1 220061226 220061254 -62132410 + AT_rich Low_complexity Low_complexity 1 28 0 240 260 163 0 chr1 220061583 220061706 -62131958 - L1M4 LINE L1 -370 5808 5666 252 260 0 0 chr1 220063433 220063483 -62130181 - MLT1I LTR MaLR -222 187 138 5113 79 10 0 chr1 220064668 220065354 -62128310 - L1PA7 LINE L1 0 6154 5462 10189 93 4 4 chr1 220065355 220066804 -62126860 + L1PA7 LINE L1 3198 4646 -1500 6727 72 6 0 chr1 220066864 220068243 -62125421 + L1PA7 LINE L1 4769 6152 -2 1273 160 68 0 chr1 220068415 220068665 -62124999 + L1MC2 LINE L1 6055 6321 -23 3126 212 33 19 chr1 220068803 220069565 -62124099 - MER21B LTR ERV1 -14 849 17 510 61 0 0 chr1 220069600 220069666 -62123998 + (TA)n Simple_repeat Simple_repeat 2 67 0 44 84 0 0 chr1 220069938 220070045 -62123619 + AT_rich Low_complexity Low_complexity 1 107 0 21 0 0 0 chr1 220071277 220071298 -62122366 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 220071568 220071589 -62122075 + AT_rich Low_complexity Low_complexity 1 21 0 268 270 0 0 chr1 220071825 220071888 -62121776 - MIR SINE MIR -101 161 99 1539 171 88 20 chr1 220071888 220072239 -62121425 + THE1C LTR MaLR 1 375 0 9680 116 41 38 chr1 220072239 220073815 -62119849 + THE1C-int LTR MaLR 1 1580 0 1807 134 66 41 chr1 220073815 220074181 -62119483 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr1 220074269 220074293 -62119371 + AT_rich Low_complexity Low_complexity 1 24 0 1100 235 102 80 chr1 220074443 220075332 -62118332 - L1MC5 LINE L1 -60 7901 6993 339 170 45 0 chr1 220075447 220075517 -62118147 - L1MA5 LINE L1 -195 5961 5891 330 264 49 31 chr1 220075526 220075689 -62117975 + L1MCa LINE L1 1787 1952 -4474 861 280 77 43 chr1 220075706 220076328 -62117336 + L1MCa LINE L1 2089 2731 -3876 445 304 92 48 chr1 220077297 220077524 -62116140 + MIR SINE MIR 23 259 -3 184 194 0 69 chr1 220078225 220078297 -62115367 + GA-rich Low_complexity Low_complexity 6 72 0 268 181 24 72 chr1 220078309 220078392 -62115272 - LTR41 LTR ERVL -1 772 694 382 278 98 41 chr1 220079084 220079278 -62114386 - LTR41 LTR ERVL -568 205 1 312 292 51 56 chr1 220079735 220079951 -62113713 + L1M4 LINE L1 4836 5050 -1096 29 47 0 0 chr1 220080242 220080285 -62113379 + AT_rich Low_complexity Low_complexity 1 43 0 634 105 19 0 chr1 220081319 220081424 -62112240 + (TC)n Simple_repeat Simple_repeat 2 108 0 2291 88 0 0 chr1 220081425 220081720 -62111944 - AluSc SINE Alu -14 295 1 200 35 35 0 chr1 220081861 220081890 -62111774 + (TC)n Simple_repeat Simple_repeat 1 30 0 235 143 0 0 chr1 220081956 220081991 -62111673 + MLT1A2 LTR MaLR 1 35 -339 199 51 0 51 chr1 220082798 220082837 -62110827 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 476 174 14 29 chr1 220083361 220083499 -62110165 + CT-rich Low_complexity Low_complexity 3 138 0 446 205 139 0 chr1 220083524 220083646 -62110018 - L1MD2 LINE L1 -164 6455 6317 1381 193 81 29 chr1 220083646 220083993 -62109671 - MLT1A1 LTR MaLR 0 365 1 2639 222 28 27 chr1 220084075 220085030 -62108634 - L1MD2 LINE L1 -427 6192 5240 1084 334 75 58 chr1 220085026 220086215 -62107449 - L1MD2 LINE L1 -1988 4418 3210 * 664 79 0 30 chr1 220086215 220086316 -62107348 - L1PA8 LINE L1 0 6172 6075 26 0 0 0 chr1 220086405 220086431 -62107233 + AT_rich Low_complexity Low_complexity 1 26 0 5859 67 17 4 chr1 220086431 220087240 -62106424 - L1PA8 LINE L1 -121 6051 5231 909 253 37 17 chr1 220087231 220087583 -62106081 - L1MD2 LINE L1 -3184 3222 2864 * 1895 308 136 6 chr1 220087577 220088399 -62105265 - L1MD2 LINE L1 -5472 937 9 245 311 27 0 chr1 220089921 220089995 -62103669 + MIR SINE MIR 168 243 -19 259 325 66 25 chr1 220090124 220090367 -62103297 + L1ME LINE L1 5602 5854 -267 1993 150 51 20 chr1 220090500 220090853 -62102811 + THE1B LTR MaLR 1 364 0 1556 146 37 30 chr1 220091364 220091659 -62102005 + AluJo SINE Alu 6 302 -10 707 249 73 12 chr1 220091740 220091985 -62101679 + L1MA10 LINE L1 6046 6305 -29 28 0 0 0 chr1 220092592 220092620 -62101044 + AT_rich Low_complexity Low_complexity 1 28 0 440 267 50 0 chr1 220093346 220093507 -62100157 + L1M4 LINE L1 2234 2402 -3744 644 303 149 38 chr1 220093529 220094622 -62099042 - L1M4 LINE L1 -1279 4867 3653 539 342 110 11 chr1 220094634 220095078 -62098586 - L2 LINE L2 -954 2360 1873 246 262 24 12 chr1 220095171 220095255 -62098409 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 1350 137 137 15 chr1 220095429 220095692 -62097972 - L1PA16 LINE L1 0 6166 5872 8326 240 49 21 chr1 220095694 220098816 -62094848 - L1MC2 LINE L1 -16 6608 3365 2031 123 23 0 chr1 220098816 220099116 -62094548 - AluSg1 SINE Alu -2 307 1 8326 240 49 21 chr1 220099116 220099771 -62093893 - L1MC2 LINE L1 -3259 3365 2730 1284 253 7 10 chr1 220099806 220100110 -62093554 - MLT1A1 LTR MaLR -18 347 45 8829 203 109 32 chr1 220100110 220102555 -62091109 - L1MC2 LINE L1 -3925 2682 6 1270 184 31 8 chr1 220102541 220102802 -62090862 - L1MC1 LINE L1 -506 5827 5561 * 351 98 49 0 chr1 220102805 220102866 -62090798 - L1MC1 LINE L1 -844 5489 5426 26 50 0 0 chr1 220102926 220102966 -62090698 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 220103404 220103426 -62090238 + AT_rich Low_complexity Low_complexity 1 22 0 31 68 0 0 chr1 220104045 220104104 -62089560 + AT_rich Low_complexity Low_complexity 1 59 0 191 196 17 23 chr1 220104120 220104293 -62089371 + (TA)n Simple_repeat Simple_repeat 1 172 0 390 189 59 6 chr1 220104321 220104490 -62089174 + (TA)n Simple_repeat Simple_repeat 1 178 0 30 0 0 0 chr1 220104643 220104673 -62088991 + AT_rich Low_complexity Low_complexity 1 30 0 2100 205 27 2 chr1 220104673 220105116 -62088548 - L1MA5 LINE L1 -255 6045 5592 27337 25 4 2 chr1 220105121 220109203 -62084461 - L1PA2 LINE L1 0 6155 2065 4859 36 0 0 chr1 220109202 220109789 -62083875 + L1PA2 LINE L1 1485 2071 -4075 * 1070 156 47 0 chr1 220109791 220110003 -62083661 - L1MA5 LINE L1 -697 5603 5382 25 0 0 0 chr1 220110182 220110207 -62083457 + AT_rich Low_complexity Low_complexity 1 25 0 29 104 0 0 chr1 220110654 220110760 -62082904 + AT_rich Low_complexity Low_complexity 1 106 0 780 258 107 79 chr1 220112637 220113103 -62080561 - L2 LINE L2 -1 3312 2834 642 249 155 48 chr1 220113143 220113452 -62080212 + L2 LINE L2 1749 2090 -1224 296 271 40 16 chr1 220113559 220113701 -62079963 + L1ME1 LINE L1 6004 6153 -13 50 83 0 0 chr1 220113815 220113935 -62079729 + AT_rich Low_complexity Low_complexity 1 120 0 439 259 75 44 chr1 220113967 220114193 -62079471 + L1M4 LINE L1 5353 5587 -591 24 0 0 0 chr1 220115647 220115671 -62077993 + AT_rich Low_complexity Low_complexity 1 24 0 380 332 43 24 chr1 220115802 220116010 -62077654 + MIR SINE MIR 51 262 0 2170 109 0 0 chr1 220116029 220116312 -62077352 - AluSq SINE Alu -30 283 1 29 84 0 0 chr1 220116314 220116385 -62077279 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr1 220116546 220116576 -62077088 + AT_rich Low_complexity Low_complexity 1 30 0 210 187 11 0 chr1 220117294 220117352 -62076312 + A-rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr1 220117434 220117469 -62076195 + AT_rich Low_complexity Low_complexity 1 35 0 654 165 0 0 chr1 220117964 220118091 -62075573 + CT-rich Low_complexity Low_complexity 2 128 0 297 296 35 35 chr1 220118883 220119025 -62074639 - L1ME3A LINE L1 -9 6161 6020 2218 147 8 23 chr1 220119438 220119833 -62073831 - MLT1B LTR MaLR 0 390 2 21 36 0 0 chr1 220119835 220119863 -62073801 + AT_rich Low_complexity Low_complexity 1 28 0 1755 113 15 4 chr1 220120793 220121059 -62072605 + L1PA13 LINE L1 5891 6159 -4 677 331 80 26 chr1 220121164 220121341 -62072323 - Charlie8 DNA MER1_type -1201 1216 1050 201 74 0 0 chr1 220121341 220121368 -62072296 + (CA)n Simple_repeat Simple_repeat 1 27 0 677 331 80 26 chr1 220121368 220121831 -62071833 - Charlie8 DNA MER1_type -1367 1050 542 21 36 0 0 chr1 220121916 220121944 -62071720 + AT_rich Low_complexity Low_complexity 1 28 0 241 340 54 16 chr1 220122316 220122501 -62071163 - Charlie8 DNA MER1_type -1858 559 368 433 196 0 43 chr1 220122569 220122661 -62071003 - LTR41 LTR ERVL -2 771 684 42 82 0 0 chr1 220123617 220123715 -62069949 + AT_rich Low_complexity Low_complexity 1 98 0 21 0 0 0 chr1 220123929 220123950 -62069714 + AT_rich Low_complexity Low_complexity 1 21 0 301 331 143 7 chr1 220124055 220124209 -62069455 - HAL1 LINE L1 -114 2393 2219 800 203 221 39 chr1 220124990 220125148 -62068516 + MLT1B LTR MaLR 1 129 -261 213 39 0 0 chr1 220125148 220125174 -62068490 + (TC)n Simple_repeat Simple_repeat 2 27 0 800 203 221 39 chr1 220125174 220125345 -62068319 + MLT1B LTR MaLR 129 390 0 2116 110 3 10 chr1 220125915 220126215 -62067449 - AluSx SINE Alu -12 300 3 1728 292 31 55 chr1 220126219 220127406 -62066258 - L1M4 LINE L1 -2139 4007 2849 11582 175 34 21 chr1 220127459 220130969 -62062695 - L1MA3 LINE L1 0 6509 2950 25 51 0 0 chr1 220131609 220131648 -62062016 + AT_rich Low_complexity Low_complexity 1 39 0 26 88 0 0 chr1 220131792 220131860 -62061804 + AT_rich Low_complexity Low_complexity 1 68 0 724 188 8 115 chr1 220131860 220132121 -62061543 + L1M4 LINE L1 4812 5044 -1102 28 29 0 0 chr1 220132987 220133022 -62060642 + AT_rich Low_complexity Low_complexity 1 35 0 5281 125 23 4 chr1 220133113 220134584 -62059080 - L1PA13 LINE L1 0 6814 5295 5579 29 16 0 chr1 220134599 220135266 -62058398 - L1PA3 LINE L1 -1 6154 5477 13073 211 46 49 chr1 220135288 220140498 -62053166 - L1PA13 LINE L1 -1491 5306 33 1349 308 36 107 chr1 220142111 220143402 -62050262 - L1MA3 LINE L1 -4910 1371 173 279 86 0 0 chr1 220144689 220144724 -62048940 + Alu SINE Alu 16 50 -252 1941 27 0 0 chr1 220145197 220145422 -62048242 - L1PA2 LINE L1 -372 5783 5559 3352 16 0 0 chr1 220145422 220145804 -62047860 + L1PA2 LINE L1 5766 6153 -2 22 0 0 0 chr1 220145804 220145826 -62047838 + AT_rich Low_complexity Low_complexity 1 22 0 1374 148 3 82 chr1 220146757 220147060 -62046604 - L1MA4A LINE L1 -2 6301 6023 325 355 124 42 chr1 220147730 220148085 -62045579 + HAL1 LINE L1 1492 1875 -632 1731 193 0 17 chr1 220148278 220148573 -62045091 - AluJb SINE Alu -20 292 3 1373 242 93 29 chr1 220149110 220149429 -62044235 - L1ME LINE L1 -476 5690 5393 348 24 0 0 chr1 220149429 220149470 -62044194 + (CA)n Simple_repeat Simple_repeat 1 41 0 1373 242 93 29 chr1 220149470 220149895 -62043769 - L1ME LINE L1 -773 5393 4907 254 265 15 0 chr1 220149928 220149996 -62043668 + LTR67 LTR ERVL 487 555 -2 223 354 98 12 chr1 220150011 220150175 -62043489 - L2 LINE L2 -459 2855 2678 219 246 0 15 chr1 220150696 220150761 -62042903 + GA-rich Low_complexity Low_complexity 1 64 0 5705 133 18 5 chr1 220152260 220152272 -62041392 - L1PA15 LINE L1 -3 6162 6152 239 0 32 0 chr1 220152272 220152303 -62041361 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5705 133 18 5 chr1 220152303 220153238 -62040426 - L1PA15 LINE L1 -13 6152 5204 344 326 38 23 chr1 220153320 220153452 -62040212 - MLT2E LTR ERVL -456 172 39 238 264 60 18 chr1 220154740 220154907 -62038757 + (CTATA)n Simple_repeat Simple_repeat 2 175 0 * 392 230 33 13 chr1 220154784 220154936 -62038728 + (TTATA)n Simple_repeat Simple_repeat 5 159 0 1609 234 33 64 chr1 220155980 220156065 -62037599 - MLT1C LTR MaLR 0 467 381 3477 184 22 42 chr1 220156065 220156866 -62036798 + LTR1 LTR ERV1 1 785 0 1609 234 33 64 chr1 220156866 220157262 -62036402 - MLT1C LTR MaLR -86 381 1 1612 187 154 10 chr1 220157797 220158199 -62035465 - MER74C LTR ERVL 0 460 1 477 329 34 8 chr1 220159258 220159495 -62034169 + HsTC2 DNA Tc2 3 245 -1653 341 324 36 22 chr1 220159495 220159634 -62034030 + HsTC2 DNA Tc2 1227 1543 -355 486 361 67 9 chr1 220160006 220160273 -62033391 - L2 LINE L2 -223 3090 2808 301 330 9 0 chr1 220160273 220160385 -62033279 - MER81 DNA DNA 0 114 2 486 361 67 9 chr1 220160385 220160405 -62033259 - L2 LINE L2 -505 2808 2791 434 304 275 4 chr1 220160420 220160696 -62032968 - L2 LINE L2 -840 2474 2124 2566 326 112 32 chr1 220160700 220162392 -62031272 - L2 LINE L2 -1405 1909 83 4887 162 6 11 chr1 220162665 220164390 -62029274 - L1PA16 LINE L1 -9 6860 5159 12026 203 28 15 chr1 220164398 220167446 -62026218 - L1PA16 LINE L1 -3067 3782 733 22 35 0 0 chr1 220168035 220168064 -62025600 + AT_rich Low_complexity Low_complexity 1 29 0 578 298 186 33 chr1 220168681 220169340 -62024324 - L2 LINE L2 -161 3152 2359 30 27 0 0 chr1 220169363 220169400 -62024264 + AT_rich Low_complexity Low_complexity 1 37 0 978 234 142 108 chr1 220169608 220170237 -62023427 - MLT1E1 LTR MaLR -4 650 1 226 322 0 17 chr1 220171591 220171650 -62022014 + L3 LINE CR1 1511 1568 -9 22 0 0 0 chr1 220171709 220171731 -62021933 + AT_rich Low_complexity Low_complexity 1 22 0 240 374 0 10 chr1 220171971 220172070 -62021594 - MIR3 SINE MIR -14 194 97 23 78 0 0 chr1 220172846 220172897 -62020767 + AT_rich Low_complexity Low_complexity 1 51 0 251 267 33 22 chr1 220172900 220172990 -62020674 + MIR SINE MIR 148 238 -24 586 296 98 15 chr1 220173733 220173936 -62019728 - MIR SINE MIR -38 224 5 1803 186 53 17 chr1 220174333 220174693 -62018971 - Ricksha DNA DNA -873 381 9 345 113 81 0 chr1 220174826 220174888 -62018776 + MLT2B3 LTR ERVL 28 94 -460 1952 190 32 9 chr1 220174899 220175610 -62018054 + Ricksha_b DNA DNA 525 1654 -13 2277 75 0 14 chr1 220177304 220177598 -62016066 - AluY SINE Alu -21 290 1 21 57 0 0 chr1 220178116 220178151 -62015513 + AT_rich Low_complexity Low_complexity 1 35 0 2114 69 0 21 chr1 220178528 220178710 -62014954 - AluY SINE Alu 0 311 136 423 0 0 0 chr1 220178710 220178757 -62014907 + (TA)n Simple_repeat Simple_repeat 1 47 0 2114 69 0 21 chr1 220178757 220178862 -62014802 - AluY SINE Alu -175 136 30 753 331 55 60 chr1 220178887 220179488 -62014176 + L2 LINE L2 1713 2310 -1004 215 135 39 19 chr1 220179493 220179545 -62014119 + (TA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr1 220179769 220179792 -62013872 + AT_rich Low_complexity Low_complexity 1 23 0 1498 178 68 0 chr1 220181157 220181449 -62012215 + AluSx SINE Alu 1 312 0 26 50 0 0 chr1 220181831 220181871 -62011793 + AT_rich Low_complexity Low_complexity 1 40 0 344 343 71 40 chr1 220182633 220182957 -62010707 + MLT1K LTR MaLR 168 501 -87 1889 184 87 3 chr1 220183386 220183778 -62009886 + MSTB1 LTR MaLR 8 432 0 412 308 110 3 chr1 220184856 220185055 -62008609 + MIR SINE MIR 23 245 -17 43 64 0 0 chr1 220185205 220185283 -62008381 + AT_rich Low_complexity Low_complexity 1 78 0 2319 59 0 7 chr1 220185297 220185585 -62008079 + AluY SINE Alu 1 286 -25 1935 111 59 0 chr1 220185720 220186008 -62007656 + AluSq SINE Alu 1 305 -8 221 267 0 0 chr1 220186321 220186366 -62007298 + T-rich Low_complexity Low_complexity 1 45 0 887 221 0 0 chr1 220187390 220187553 -62006111 - FRAM SINE Alu -14 162 1 22 35 0 0 chr1 220187644 220187673 -62005991 + AT_rich Low_complexity Low_complexity 1 29 0 368 366 89 22 chr1 220187905 220188274 -62005390 + L2 LINE L2 2570 2963 -351 22 56 0 0 chr1 220188420 220188456 -62005208 + AT_rich Low_complexity Low_complexity 1 36 0 234 410 22 8 chr1 220188458 220188592 -62005072 + L2 LINE L2 3137 3272 0 299 293 149 16 chr1 220189032 220189220 -62004444 + MIR SINE MIR 45 257 -5 365 271 91 95 chr1 220189259 220189469 -62004195 - MLT1H1 LTR MaLR -290 265 75 463 279 53 25 chr1 220189589 220189767 -62003897 + MIR SINE MIR 74 257 -5 309 304 0 10 chr1 220189808 220189910 -62003754 + MIR SINE MIR 92 192 -70 216 67 0 0 chr1 220190008 220190038 -62003626 + (TAA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr1 220190304 220190328 -62003336 + AT_rich Low_complexity Low_complexity 1 24 0 909 196 33 0 chr1 220190545 220190759 -62002905 + L1MA4 LINE L1 6074 6294 -6 756 175 106 41 chr1 220191634 220191880 -62001784 - MER33 DNA MER1_type -23 301 40 409 350 85 37 chr1 220191894 220192188 -62001476 - L2 LINE L2 -420 2894 2587 1871 194 48 34 chr1 220192296 220192840 -62000824 - MLT2A2 LTR ERVL 0 554 3 23 0 0 0 chr1 220193039 220193062 -62000602 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 220193451 220193472 -62000192 + AT_rich Low_complexity Low_complexity 1 21 0 1331 246 108 45 chr1 220193586 220194012 -61999652 + MLT2B2 LTR ERVL 1 453 -62 227 172 35 35 chr1 220194020 220194078 -61999586 + L1MC4 LINE L1 6646 6703 -1339 313 156 0 3 chr1 220194119 220194177 -61999487 + MLT2B1 LTR ERVL 397 520 0 21 71 0 0 chr1 220195252 220195294 -61998370 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 220195673 220195702 -61997962 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 220196551 220196574 -61997090 + AT_rich Low_complexity Low_complexity 1 23 0 1881 156 3 7 chr1 220197971 220198278 -61995386 - AluSq SINE Alu -7 306 1 268 200 31 0 chr1 220199067 220199132 -61994532 - L1M4 LINE L1 -1115 5031 4965 514 307 82 26 chr1 220199133 220199166 -61994498 + L2 LINE L2 2638 2668 -646 6295 76 14 2 chr1 220199166 220199983 -61993681 + LTR12 LTR ERV1 1 826 0 514 307 82 26 chr1 220199983 220200119 -61993545 + L2 LINE L2 2668 2830 -484 2215 91 37 0 chr1 220200119 220200415 -61993249 - AluY SINE Alu -4 307 1 514 307 82 26 chr1 220200415 220200511 -61993153 + L2 LINE L2 2830 2919 -395 741 126 76 0 chr1 220200611 220200730 -61992934 + AluSg/x SINE Alu 169 296 -16 2057 90 21 3 chr1 220201103 220201393 -61992271 + AluY SINE Alu 1 295 -16 260 320 109 26 chr1 220201794 220201950 -61991714 + MIR3 SINE MIR 19 187 -21 282 329 82 41 chr1 220201982 220202088 -61991576 + MIR SINE MIR 42 159 -103 3020 155 2 4 chr1 220202088 220202586 -61991078 - LOR1a LTR ERV1 0 497 1 282 329 82 41 chr1 220202586 220202649 -61991015 + MIR SINE MIR 159 218 -44 301 234 0 75 chr1 220203391 220203485 -61990179 + MLT1F LTR MaLR 271 357 -185 1073 236 106 22 chr1 220203655 220203680 -61989984 - MLT1B LTR MaLR 0 390 369 207 0 0 0 chr1 220203680 220203703 -61989961 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1073 236 106 22 chr1 220203703 220204037 -61989627 - MLT1B LTR MaLR -21 369 1 967 213 146 26 chr1 220204072 220204340 -61989324 + AluJo SINE Alu 1 300 -2 22 35 0 0 chr1 220204829 220204858 -61988806 + GC_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr1 220204874 220204901 -61988763 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 2365 236 58 32 chr1 220204902 220207641 -61986023 + L1MC3 LINE L1 4112 7081 -704 3126 196 21 2 chr1 220207641 220208270 -61985394 + L1PB4 LINE L1 5509 6149 -7 2365 236 58 32 chr1 220208270 220208942 -61984722 + L1MC3 LINE L1 7081 7734 -51 4417 159 61 24 chr1 220208979 220209866 -61983798 - L1MA5 LINE L1 -7 6293 5374 1227 146 9 18 chr1 220209855 220210081 -61983583 - L1MA5 LINE L1 -1350 4796 4573 * 217 293 0 35 chr1 220211148 220211206 -61982458 + L2 LINE L2 3181 3236 -36 24 0 0 0 chr1 220211236 220211260 -61982404 + AT_rich Low_complexity Low_complexity 1 24 0 370 214 214 85 chr1 220211904 220212105 -61981559 - MLT1H LTR MaLR -25 524 298 183 409 11 0 chr1 220212986 220213074 -61980590 - MER5B DNA MER1_type 0 178 90 333 331 35 14 chr1 220213679 220213824 -61979840 - MLT1F LTR MaLR 0 590 443 367 224 0 0 chr1 220213916 220213992 -61979672 - MLT1F LTR MaLR -192 350 275 332 288 161 12 chr1 220214067 220214241 -61979423 - MLT1H1 LTR MaLR -297 258 66 249 278 56 62 chr1 220214319 220214481 -61979183 - MLT1H1-int LTR MaLR -4 1731 1571 1622 189 76 25 chr1 220215456 220215811 -61977853 + MSTD LTR MaLR 1 373 -23 2070 117 33 0 chr1 220215811 220216110 -61977554 - AluSg SINE Alu -1 309 1 202 229 0 0 chr1 220216268 220216316 -61977348 + (TA)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr1 220216492 220216517 -61977147 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 220217254 220217275 -61976389 + AT_rich Low_complexity Low_complexity 1 21 0 2246 77 0 7 chr1 220217282 220217592 -61976072 - AluSx SINE Alu -4 308 1 262 374 48 0 chr1 220218061 220218208 -61975456 + L2 LINE L2 2901 3054 -218 537 92 0 0 chr1 220218346 220218422 -61975242 - MADE1 DNA Mariner -4 76 1 2550 198 82 10 chr1 220219186 220219763 -61973901 + L1MD1 LINE L1 5625 6242 0 1345 184 7 59 chr1 220219772 220220077 -61973587 + AluJb SINE Alu 1 289 -23 22 70 0 0 chr1 220220248 220220291 -61973373 + AT_rich Low_complexity Low_complexity 1 43 0 2670 7 0 0 chr1 220220943 220221233 -61972431 - AluYa5 SINE Alu -12 299 10 23 33 0 0 chr1 220221598 220221628 -61972036 + AT_rich Low_complexity Low_complexity 1 30 0 200 264 0 0 chr1 220221928 220222000 -61971664 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 2010 151 38 24 chr1 220223166 220223536 -61970128 + THE1C LTR MaLR 1 375 0 220 197 42 14 chr1 220224653 220224724 -61968940 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 227 309 25 0 chr1 220224735 220224816 -61968848 - MIR SINE MIR -112 150 68 49 87 0 0 chr1 220224992 220225118 -61968546 + AT_rich Low_complexity Low_complexity 1 126 0 25 77 0 13 chr1 220225360 220225380 -61968284 + AT_rich Low_complexity Low_complexity 1 20 -57 2176 44 84 0 chr1 220225380 220225654 -61968010 - AluY SINE Alu -14 297 1 25 77 0 13 chr1 220225654 220225711 -61967953 + AT_rich Low_complexity Low_complexity 20 77 0 250 358 37 43 chr1 220225720 220225882 -61967782 + MIR SINE MIR 1 161 -101 3985 177 45 37 chr1 220226203 220226835 -61966829 + L1PA16 LINE L1 4549 5175 -991 180 0 0 0 chr1 220226835 220226855 -61966809 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3985 177 45 37 chr1 220226855 220227017 -61966647 + L1PA16 LINE L1 5175 5334 -832 2311 100 7 3 chr1 220227017 220227326 -61966338 + AluSq SINE Alu 1 310 -3 249 33 0 0 chr1 220227326 220227356 -61966308 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 3985 177 45 37 chr1 220227356 220228143 -61965521 + L1PA16 LINE L1 5333 6163 -3 1216 283 32 40 chr1 220228870 220229364 -61964300 - L1ME3A LINE L1 -280 5890 5401 402 314 32 0 chr1 220229774 220229930 -61963734 - LTR65 LTR ERV1 -508 161 1 1420 295 91 33 chr1 220229976 220230595 -61963069 - L1ME3A LINE L1 -869 5277 4696 180 0 0 0 chr1 220230595 220230615 -61963049 + (CA)n Simple_repeat Simple_repeat 2 21 0 1420 295 91 33 chr1 220230615 220231277 -61962387 - L1ME3A LINE L1 -1450 4696 3921 730 275 42 35 chr1 220231424 220231828 -61961836 - L1ME1 LINE L1 -5 6161 5755 2059 178 8 0 chr1 220231864 220232246 -61961418 - L1PB4 LINE L1 -3 6153 5769 9367 216 28 20 chr1 220232247 220235643 -61958021 - L1PA16 LINE L1 -2 7602 4172 2152 190 26 21 chr1 220235646 220236072 -61957592 + MSTA LTR MaLR 1 428 0 8133 192 23 34 chr1 220236072 220236568 -61957096 + MSTA-int LTR MaLR 1 501 -1150 5551 120 14 9 chr1 220236568 220238243 -61955421 - L1PA13 LINE L1 -7 6156 4469 8133 192 23 34 chr1 220238243 220239415 -61954249 + MSTA-int LTR MaLR 501 1651 0 942 167 0 18 chr1 220239415 220239570 -61954094 + MSTA LTR MaLR 1 157 -271 2178 133 48 20 chr1 220239570 220239924 -61953740 - THE1B LTR MaLR 0 364 1 10820 116 7 2 chr1 220239924 220241497 -61952167 - THE1B-int LTR MaLR 0 1580 1 942 167 0 18 chr1 220241497 220241508 -61952156 + MSTA LTR MaLR 155 165 -263 * 1806 148 102 0 chr1 220241503 220241828 -61951836 - THE1B LTR MaLR -6 358 1 1567 188 11 0 chr1 220241828 220242104 -61951560 + MSTA LTR MaLR 150 428 0 4379 235 48 20 chr1 220242110 220244043 -61949621 - L1PA16 LINE L1 -3417 4167 2181 444 37 0 0 chr1 220244135 220244189 -61949475 + (TTG)n Simple_repeat Simple_repeat 1 54 0 451 358 47 7 chr1 220244577 220244873 -61948791 - L1PA16 LINE L1 -5847 1738 1431 310 300 77 41 chr1 220244936 220245106 -61948558 - L1PBa LINE L1 -5257 1606 1431 473 414 64 26 chr1 220245107 220245573 -61948091 - L1PBa LINE L1 -6351 512 29 1731 177 58 26 chr1 220245633 220245977 -61947687 - MLT1A1 LTR MaLR 0 365 11 754 262 54 0 chr1 220245987 220246247 -61947417 - L1M4 LINE L1 -442 5736 5460 * 1868 244 50 6 chr1 220246229 220246773 -61946891 + L1MB7 LINE L1 5617 6184 0 25 51 0 0 chr1 220247036 220247075 -61946589 + AT_rich Low_complexity Low_complexity 1 39 0 2292 147 84 38 chr1 220248039 220248541 -61945123 - L1MA9 LINE L1 -1 6311 5787 2081 122 3 0 chr1 220248626 220248922 -61944742 - AluSx SINE Alu -13 299 3 25 65 0 0 chr1 220249730 220249776 -61943888 + AT_rich Low_complexity Low_complexity 1 46 0 351 307 74 28 chr1 220250400 220250576 -61943088 + L1MC/D LINE L1 5301 5487 -2298 1098 231 149 0 chr1 220251355 220251718 -61941946 - LTR52 LTR ERVL -3 418 2 1735 159 0 70 chr1 220253370 220253697 -61939967 + AluSx SINE Alu 1 304 -8 188 274 55 0 chr1 220253947 220254020 -61939644 - MIR SINE MIR -119 143 67 21 0 0 0 chr1 220254499 220254520 -61939144 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 220254974 220255011 -61938653 + AT_rich Low_complexity Low_complexity 1 37 0 282 260 27 0 chr1 220255122 220255195 -61938469 + L1MC3 LINE L1 191 265 -5780 1344 210 54 72 chr1 220255257 220255648 -61938016 - MLT1B LTR MaLR 0 390 7 1455 246 25 45 chr1 220255649 220255968 -61937696 + L1MC3 LINE L1 3780 4087 -2477 1715 136 4 14 chr1 220255968 220256247 -61937417 - AluSx SINE Alu -8 304 29 1455 246 25 45 chr1 220256247 220256443 -61937221 + L1MC3 LINE L1 4087 4285 -2279 9263 230 38 39 chr1 220256456 220260163 -61933501 + L1MC3 LINE L1 4503 8188 -15 1133 317 24 31 chr1 220260172 220260669 -61932995 + L2 LINE L2 2778 3270 -43 1213 256 64 56 chr1 220261954 220262439 -61931225 - L1M4 LINE L1 -2304 3842 3347 2170 105 0 10 chr1 220262439 220262735 -61930929 - AluSg SINE Alu -17 293 1 1213 256 64 56 chr1 220262735 220263015 -61930649 - L1M4 LINE L1 -2799 3347 3071 457 301 67 40 chr1 220263501 220263550 -61930114 + L1M4 LINE L1 4383 4429 -1717 2131 109 0 3 chr1 220263550 220263863 -61929801 + AluSq SINE Alu 1 312 0 457 301 67 40 chr1 220263863 220264188 -61929476 + L1M4 LINE L1 4429 4768 -1378 3409 204 24 64 chr1 220264385 220265272 -61928392 + L1MA10 LINE L1 5481 6331 -3 415 65 16 0 chr1 220265870 220265932 -61927732 + L1PA2 LINE L1 6093 6155 0 207 0 0 0 chr1 220266026 220266049 -61927615 + (TTG)n Simple_repeat Simple_repeat 2 24 0 390 287 53 40 chr1 220267717 220267867 -61925797 + MIR SINE MIR 34 185 -77 227 301 117 0 chr1 220268137 220268240 -61925424 - MER110 LTR ERV1 0 491 377 835 19 28 0 chr1 220268708 220268816 -61924848 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 22 56 0 0 chr1 220269674 220269710 -61923954 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr1 220269777 220269815 -61923849 + AT_rich Low_complexity Low_complexity 1 38 0 349 312 65 72 chr1 220270122 220270521 -61923143 + HAL1b LINE L1 226 623 -725 195 42 0 0 chr1 220270521 220270545 -61923119 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 312 65 72 chr1 220270545 220270606 -61923058 + HAL1b LINE L1 623 683 -665 26 0 0 0 chr1 220270719 220270745 -61922919 + AT_rich Low_complexity Low_complexity 1 26 0 2648 118 42 24 chr1 220271803 220272260 -61921404 - MER4C LTR ERV1 0 465 1 2717 20 0 0 chr1 220272857 220273160 -61920504 - AluYb8 SINE Alu -15 303 1 2068 127 0 0 chr1 220274856 220275147 -61918517 - AluSq SINE Alu -22 291 1 3169 208 49 1 chr1 220275167 220275861 -61917803 - L1MB3 LINE L1 -8 6175 5449 387 83 0 0 chr1 220276315 220276375 -61917289 + (TC)n Simple_repeat Simple_repeat 2 61 0 372 266 65 16 chr1 220277603 220277727 -61915937 + MLT1H LTR MaLR 81 210 -339 1694 200 44 3 chr1 220278000 220278367 -61915297 + MLT1B LTR MaLR 5 396 0 730 222 5 36 chr1 220278495 220278689 -61914975 - MER3 DNA MER1_type -16 193 6 3182 281 52 24 chr1 220278813 220281179 -61912485 + L1M3b LINE L1 761 2957 -4149 1178 286 65 17 chr1 220281203 220281690 -61911974 + L1M3b LINE L1 7 497 -6609 7576 214 49 15 chr1 220281695 220283813 -61909851 + L1M3b LINE L1 2941 5137 -1969 4805 175 68 23 chr1 220283828 220284855 -61908809 + Tigger3b DNA MER2_type 154 1226 -5 30 27 0 0 chr1 220285007 220285044 -61908620 + AT_rich Low_complexity Low_complexity 1 37 0 433 350 29 33 chr1 220286612 220286886 -61906778 + LTR16A LTR ERVL 82 354 -96 658 227 14 0 chr1 220287447 220287588 -61906076 - L1MA10 LINE L1 -15 6319 6177 343 240 41 16 chr1 220287597 220287718 -61905946 + LTR67 LTR ERVL 388 511 -46 784 396 85 19 chr1 220288349 220288934 -61904730 - L2 LINE L2 0 3313 2688 750 249 67 11 chr1 220289037 220289306 -61904358 - L1ME LINE L1 -622 5542 5259 229 274 97 8 chr1 220289369 220289493 -61904171 - L1ME LINE L1 -1081 5065 4931 695 277 121 16 chr1 220289532 220289980 -61903684 - L1ME LINE L1 -1200 4946 4452 23 0 0 0 chr1 220290797 220290820 -61902844 + AT_rich Low_complexity Low_complexity 1 23 0 2217 128 21 19 chr1 220291282 220291656 -61902008 - THE1C LTR MaLR 0 375 1 8820 151 55 11 chr1 220291656 220293170 -61900494 - THE1C-int LTR MaLR 0 1580 1 2335 130 8 16 chr1 220293170 220293548 -61900116 - THE1C LTR MaLR 0 375 1 225 371 0 0 chr1 220293693 220293763 -61899901 - MER5C DNA MER1_type -254 70 1 355 277 54 9 chr1 220293868 220293980 -61899684 + L2 LINE L2 3197 3313 0 608 219 9 0 chr1 220294110 220294224 -61899440 + FLAM_C SINE Alu 1 115 -18 3050 178 47 28 chr1 220294235 220294853 -61898811 - L1MCa LINE L1 -5777 649 20 2240 136 17 6 chr1 220294895 220295255 -61898409 + THE1B LTR MaLR 1 364 0 8762 141 30 67 chr1 220295256 220296895 -61896769 + THE1B-int LTR MaLR 2 1580 0 2098 132 87 3 chr1 220296897 220297231 -61896433 + THE1B LTR MaLR 3 364 0 403 198 10 0 chr1 220297345 220297446 -61896218 - L1MA8 LINE L1 0 6291 6190 465 293 65 52 chr1 220297797 220298029 -61895635 - MIR SINE MIR -16 246 12 26 64 0 0 chr1 220298075 220298122 -61895542 + AT_rich Low_complexity Low_complexity 1 47 0 5116 33 0 0 chr1 220298281 220299240 -61894424 - L1PA4 LINE L1 -428 5727 4769 3701 40 2 0 chr1 220299240 220299690 -61893974 + L1PA4 LINE L1 5703 6155 0 243 302 89 17 chr1 220299873 220300052 -61893612 + L1ME LINE L1 4902 5093 -1053 22 35 0 0 chr1 220300073 220300102 -61893562 + AT_rich Low_complexity Low_complexity 1 29 0 855 223 102 37 chr1 220300111 220300326 -61893338 - AluJo SINE Alu -32 280 52 340 297 137 24 chr1 220300471 220300720 -61892944 + L1ME LINE L1 5258 5534 -632 21 0 0 0 chr1 220301084 220301105 -61892559 + AT_rich Low_complexity Low_complexity 1 21 0 197 328 69 38 chr1 220301126 220301257 -61892407 - L2 LINE L2 -1 3271 3137 27 0 0 0 chr1 220302048 220302075 -61891589 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 220302380 220302409 -61891255 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 220302591 220302611 -61891053 + (TC)n Simple_repeat Simple_repeat 1 20 0 303 95 60 12 chr1 220302611 220302695 -61890969 + (CA)n Simple_repeat Simple_repeat 1 88 0 1179 240 141 32 chr1 220302884 220303318 -61890346 - MLT1D LTR MaLR -24 481 1 1030 114 0 0 chr1 220303407 220303556 -61890108 - L1PA11 LINE L1 -6 6168 6020 1294 209 39 29 chr1 220304140 220304447 -61889217 + MLT1A1 LTR MaLR 56 365 0 300 188 78 16 chr1 220305201 220305265 -61888399 - L2 LINE L2 0 3272 3205 548 323 59 0 chr1 220305556 220305742 -61887922 - MIR SINE MIR -63 199 3 944 311 70 59 chr1 220305751 220306295 -61887369 - MLT2F LTR ERVL -8 655 106 454 317 93 30 chr1 220307180 220307584 -61886080 - MLT1H LTR MaLR -8 547 79 2045 203 12 31 chr1 220307609 220307729 -61885935 - MLT2B1 LTR ERVL 0 520 399 2089 128 0 7 chr1 220307729 220308025 -61885639 + AluSg SINE Alu 1 294 -16 2045 203 12 31 chr1 220308025 220308328 -61885336 - MLT2B1 LTR ERVL -121 399 105 6022 150 13 20 chr1 220308330 220309351 -61884313 + MSTA-int LTR MaLR 567 1580 0 1851 150 142 18 chr1 220309351 220309731 -61883933 + MSTA LTR MaLR 1 427 -1 2512 67 0 3 chr1 220310037 220310349 -61883315 - AluY SINE Alu 0 311 1 1074 228 74 105 chr1 220310449 220310897 -61882767 + MLT1H LTR MaLR 83 516 -33 4202 109 2 9 chr1 220310982 220311622 -61882042 + L1PA7 LINE L1 4455 5089 -1057 6031 85 33 3 chr1 220311625 220312600 -61881064 + L1PA7 LINE L1 5152 6152 -2 25 75 0 0 chr1 220312625 220312678 -61880986 + AT_rich Low_complexity Low_complexity 1 53 0 222 191 0 0 chr1 220312721 220312768 -61880896 + (TG)n Simple_repeat Simple_repeat 2 48 0 453 376 75 18 chr1 220313572 220313854 -61879810 + L2 LINE L2 2484 2781 -533 292 368 75 21 chr1 220315735 220315974 -61877690 - L3 LINE CR1 -11 1566 1315 1306 238 59 53 chr1 220315995 220316507 -61877157 + L1ME2 LINE L1 5650 6164 0 2235 98 7 0 chr1 220316994 220317299 -61876365 + AluSp SINE Alu 1 307 -6 1808 230 34 15 chr1 220318591 220319069 -61874595 - L1 LINE L1 -905 5241 4755 3886 189 27 33 chr1 220319119 220320002 -61873662 + L1MB1 LINE L1 5290 6167 -1 30 0 0 0 chr1 220320224 220320254 -61873410 + AT_rich Low_complexity Low_complexity 1 30 0 268 95 48 29 chr1 220320254 220320359 -61873305 + (TATAA)n Simple_repeat Simple_repeat 3 109 0 61 0 0 0 chr1 220320359 220320420 -61873244 + AT_rich Low_complexity Low_complexity 1 61 0 4091 201 48 92 chr1 220321394 220322351 -61871313 - L1MA10 LINE L1 -16 6318 5320 2148 114 0 0 chr1 220322351 220322657 -61871007 - AluSg1 SINE Alu -3 306 1 450 0 0 0 chr1 220322660 220322710 -61870954 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1981 126 4 0 chr1 220322716 220322993 -61870671 - AluSp SINE Alu -35 278 1 4091 201 48 92 chr1 220322993 220323628 -61870036 - L1MA10 LINE L1 -1021 5313 4801 1605 173 31 7 chr1 220323671 220323960 -61869704 - AluJb SINE Alu -16 296 1 257 369 64 64 chr1 220324923 220325159 -61868505 - L2 LINE L2 -8 3264 3029 1540 201 48 28 chr1 220325763 220326117 -61867547 - MLT1A1 LTR MaLR -4 361 1 420 220 33 0 chr1 220326823 220326914 -61866750 + Tigger3b DNA MER2_type 1 94 -1137 5849 154 30 43 chr1 220326966 220328140 -61865524 + Tigger3b DNA MER2_type 73 1231 0 183 186 0 0 chr1 220329479 220329522 -61864142 + T-rich Low_complexity Low_complexity 1 43 0 585 318 66 47 chr1 220330569 220330950 -61862714 - L2 LINE L2 -50 3263 2876 23 54 0 0 chr1 220331687 220331724 -61861940 + AT_rich Low_complexity Low_complexity 1 37 0 1072 277 78 58 chr1 220331781 220332333 -61861331 + L1MCb LINE L1 3 565 -5480 1328 216 54 0 chr1 220332456 220332752 -61860912 - L1MC1 LINE L1 -2 6331 6020 1575 267 106 43 chr1 220332753 220333686 -61859978 + L1MCb LINE L1 572 1444 -5301 1320 210 43 58 chr1 220333686 220334081 -61859583 - MLT1B LTR MaLR 0 390 2 1575 267 106 43 chr1 220334081 220335088 -61858576 + L1MCb LINE L1 1444 2804 -3941 344 85 0 0 chr1 220335107 220335154 -61858510 - MADE1 DNA Mariner -33 47 1 300 269 41 25 chr1 220335155 220335352 -61858312 + L1MCb LINE L1 2819 3018 -3546 23 33 0 0 chr1 220335435 220335465 -61858199 + AT_rich Low_complexity Low_complexity 1 30 0 31 68 0 0 chr1 220335641 220335700 -61857964 + AT_rich Low_complexity Low_complexity 1 59 0 216 269 0 0 chr1 220336631 220336683 -61856981 + (AATAG)n Simple_repeat Simple_repeat 3 54 0 359 162 14 40 chr1 220336770 220336844 -61856820 - MER112 DNA MER1_type -188 72 1 23 68 0 0 chr1 220337641 220337685 -61855979 + AT_rich Low_complexity Low_complexity 1 44 0 39 50 0 0 chr1 220337731 220337791 -61855873 + AT_rich Low_complexity Low_complexity 1 60 0 2140 125 0 7 chr1 220337929 220338232 -61855432 - AluSx SINE Alu -11 301 1 367 220 23 19 chr1 220338347 220338479 -61855185 + L1MC4 LINE L1 1995 6985 -1337 345 294 34 34 chr1 220338562 220338708 -61854956 + MIR SINE MIR 71 216 -46 22 0 0 0 chr1 220339334 220339356 -61854308 + AT_rich Low_complexity Low_complexity 1 22 0 848 273 16 55 chr1 220339629 220339940 -61853724 - MER58B DNA MER1_type -1 340 42 7267 216 47 15 chr1 220339951 220342604 -61851060 + L1PB3 LINE L1 3414 6152 -2 195 351 14 0 chr1 220344022 220344096 -61849568 + L2 LINE L2 3194 3268 -4 401 133 41 0 chr1 220344278 220344376 -61849288 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 27 0 0 0 chr1 220344793 220344820 -61848844 + AT_rich Low_complexity Low_complexity 1 27 0 1393 203 130 52 chr1 220345050 220345450 -61848214 - MLT1D LTR MaLR -2 503 73 288 70 0 0 chr1 220345457 220345500 -61848164 + (CA)n Simple_repeat Simple_repeat 2 44 0 1638 279 106 25 chr1 220345800 220346856 -61846808 - L1MEc LINE L1 -2431 3784 2643 1603 287 91 38 chr1 220346858 220348499 -61845165 - L1MEc LINE L1 -3648 2567 861 1381 181 0 19 chr1 220348499 220348765 -61844899 - L1PB4 LINE L1 -6 6150 5890 1603 287 91 38 chr1 220348765 220348776 -61844888 - L1MEc LINE L1 -5354 861 852 608 226 49 53 chr1 220348788 220349014 -61844650 + L1M4 LINE L1 3837 4061 -2085 189 175 0 0 chr1 220349311 220349351 -61844313 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1477 227 36 54 chr1 220349423 220349945 -61843719 - L1PB4 LINE L1 -11 6145 5668 295 247 10 72 chr1 220350152 220350249 -61843415 + Tigger5 DNA MER2_type 2233 2323 0 7490 34 0 0 chr1 220350370 220351304 -61842360 + L1PA4 LINE L1 5221 6154 -1 2182 82 29 0 chr1 220351774 220352080 -61841584 - L1PA7 LINE L1 0 6154 5840 308 254 146 0 chr1 220352610 220352720 -61840944 - L1MEd LINE L1 -3654 2475 2350 32 111 0 0 chr1 220352732 220352876 -61840788 + AT_rich Low_complexity Low_complexity 1 144 0 239 180 33 49 chr1 220353414 220353475 -61840189 - L1MEd LINE L1 -5974 145 86 225 362 81 23 chr1 220353755 220353929 -61839735 + MIR SINE MIR 41 224 -38 1864 144 0 7 chr1 220354486 220354770 -61838894 + AluSx SINE Alu 27 308 -4 27 29 0 0 chr1 220355085 220355119 -61838545 + AT_rich Low_complexity Low_complexity 1 34 0 188 348 51 25 chr1 220355922 220356080 -61837584 + L2 LINE L2 2596 2757 -557 21 80 0 0 chr1 220357025 220357050 -61836614 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr1 220357216 220357239 -61836425 + AT_rich Low_complexity Low_complexity 1 23 0 247 282 59 0 chr1 220357451 220357536 -61836128 + L2 LINE L2 3224 3313 0 292 318 31 8 chr1 220357780 220357909 -61835755 - MLT1H LTR MaLR -338 211 80 21 36 0 0 chr1 220358179 220358207 -61835457 + AT_rich Low_complexity Low_complexity 1 28 0 5253 88 98 0 chr1 220358686 220359438 -61834226 - LTR12 LTR ERV1 0 826 1 184 315 82 0 chr1 220359634 220359707 -61833957 - L3 LINE CR1 -1082 495 417 512 194 20 0 chr1 220359759 220359857 -61833807 - HY3 scRNA scRNA -1 100 1 1519 215 91 107 chr1 220360227 220360790 -61832874 - MLT2B3 LTR ERVL 0 554 1 341 220 20 10 chr1 220360951 220361051 -61832613 - L1M4 LINE L1 -854 5292 5192 760 166 131 0 chr1 220361057 220361244 -61832420 - AluSg/x SINE Alu 0 326 121 1119 253 79 5 chr1 220361247 220361614 -61832050 - L1M4 LINE L1 -960 5186 4793 234 238 113 0 chr1 220361659 220361739 -61831925 + L1MC4 LINE L1 6615 6703 -1339 * 242 266 0 43 chr1 220361711 220361805 -61831859 - L1MC4 LINE L1 -1339 6703 6614 * 249 264 23 23 chr1 220361797 220361884 -61831780 + L1MC4 LINE L1 6614 6700 -1342 * 253 299 23 0 chr1 220361814 220361901 -61831763 - L1MC4 LINE L1 -1340 6702 6614 323 167 15 0 chr1 220361982 220362048 -61831616 + (TA)n Simple_repeat Simple_repeat 2 68 0 424 247 0 0 chr1 220362051 220362144 -61831520 - L1M4 LINE L1 -1346 4800 4708 26 0 0 0 chr1 220364740 220364766 -61828898 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr1 220364932 220364961 -61828703 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 220365294 220365324 -61828340 + AT_rich Low_complexity Low_complexity 1 30 0 407 256 0 0 chr1 220365694 220365780 -61827884 - MLT1K LTR MaLR -342 246 161 957 248 126 45 chr1 220367188 220367632 -61826032 - L1ME2 LINE L1 -9 6155 5676 865 193 57 26 chr1 220367929 220368157 -61825507 + L1MA9 LINE L1 6078 6312 0 1789 68 8 0 chr1 220368375 220368610 -61825054 + AluY SINE Alu 72 308 -3 1237 267 87 33 chr1 220368767 220369538 -61824126 - L1ME2 LINE L1 -555 5609 4785 1903 77 4 4 chr1 220369541 220369830 -61823834 - AluY SINE Alu 0 321 33 1931 156 3 0 chr1 220370898 220371205 -61822459 - AluSx SINE Alu -2 310 3 1592 171 89 38 chr1 220371602 220371971 -61821693 - MLT1B LTR MaLR 0 390 3 21 0 0 0 chr1 220372330 220372351 -61821313 + AT_rich Low_complexity Low_complexity 1 21 0 1939 120 46 23 chr1 220372351 220372402 -61821262 - L1MA2 LINE L1 0 6304 6256 2084 114 3 3 chr1 220372402 220372699 -61820965 - AluY SINE Alu -14 297 1 1939 120 46 23 chr1 220372699 220372997 -61820667 - L1MA2 LINE L1 -48 6256 5947 36 56 0 33 chr1 220374475 220374565 -61819099 + AT_rich Low_complexity Low_complexity 1 87 0 574 240 44 115 chr1 220374922 220375442 -61818222 + L1MC5 LINE L1 6855 7337 -624 874 217 5 30 chr1 220375447 220375650 -61818014 + MER3 DNA MER1_type 6 203 -6 346 272 56 25 chr1 220375656 220375818 -61817846 + L1MC5 LINE L1 7330 7496 -465 2143 193 74 43 chr1 220376061 220376640 -61817024 - MER7C DNA MER2_type -4 598 2 22 35 0 0 chr1 220376810 220376839 -61816825 + AT_rich Low_complexity Low_complexity 1 29 0 256 259 157 30 chr1 220376839 220377005 -61816659 - MIR SINE MIR 0 262 76 21 0 0 0 chr1 220377317 220377338 -61816326 + AT_rich Low_complexity Low_complexity 1 21 0 227 54 27 0 chr1 220377717 220377754 -61815910 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 227 340 35 0 chr1 220378351 220378495 -61815169 - MER103 DNA DNA 0 166 18 22 56 0 0 chr1 220378673 220378709 -61814955 + AT_rich Low_complexity Low_complexity 1 36 0 520 184 10 0 chr1 220379093 220379196 -61814468 + L1MC3 LINE L1 7478 7581 -204 7185 52 3 0 chr1 220379324 220380381 -61813283 - L1PA5 LINE L1 -2 6152 5096 628 238 23 90 chr1 220381585 220381884 -61811780 - MLT1E1 LTR MaLR -2 652 374 322 246 109 27 chr1 220381926 220382036 -61811628 - MLT1E1 LTR MaLR -525 129 11 21 0 0 0 chr1 220382069 220382090 -61811574 + AT_rich Low_complexity Low_complexity 1 21 0 12206 172 31 13 chr1 220382346 220386010 -61807654 - L1MA1 LINE L1 0 6302 2574 1758 183 31 0 chr1 220387819 220388169 -61805495 - L1PB4 LINE L1 -13 6143 5783 386 226 20 0 chr1 220388229 220388331 -61805333 - L1M LINE L1 -737 5427 5324 24 32 0 0 chr1 220388576 220388607 -61805057 + AT_rich Low_complexity Low_complexity 1 31 0 448 302 38 50 chr1 220388659 220389056 -61804608 - L1M4 LINE L1 -1198 4948 4557 273 275 0 0 chr1 220389174 220389243 -61804421 - L2 LINE L2 -1187 2127 2059 3564 155 46 79 chr1 220389929 220390800 -61802864 + Tigger3b DNA MER2_type 2 843 -388 228 328 53 23 chr1 220391163 220391294 -61802370 - L2 LINE L2 -191 3081 2947 937 96 15 0 chr1 220392013 220392149 -61801515 + LTR12 LTR ERV1 576 713 -1 1116 234 34 42 chr1 220392824 220393204 -61800460 - L1ME2 LINE L1 -86 6078 5702 294 280 0 13 chr1 220393622 220393697 -61799967 + MER58A DNA MER1_type 2 75 -32 377 313 9 0 chr1 220393708 220393820 -61799844 - HERV16 LTR ERVL -2379 2617 2505 1286 333 22 40 chr1 220393985 220394531 -61799133 - HERV16 LTR ERVL -2723 2273 1738 1989 135 7 0 chr1 220394548 220394837 -61798827 - AluSx SINE Alu -8 304 14 213 333 70 47 chr1 220394961 220395090 -61798574 - MIR SINE MIR -88 174 43 1897 264 28 21 chr1 220395119 220395652 -61798012 - MER74A LTR ERVL -17 541 5 1015 98 65 0 chr1 220396293 220396446 -61797218 - LTR19B LTR ERV1 -417 163 1 2148 105 0 0 chr1 220398215 220398510 -61795154 - AluY SINE Alu -16 295 1 304 248 101 8 chr1 220398868 220398997 -61794667 + L1MCc LINE L1 1243 1383 -5040 2098 113 3 3 chr1 220399807 220400107 -61793557 + AluSq SINE Alu 1 300 -13 416 246 187 12 chr1 220400160 220400331 -61793333 + MIR SINE MIR 32 232 -30 2301 66 9 19 chr1 220400669 220400988 -61792676 + L1PA6 LINE L1 5837 6152 -2 235 326 33 65 chr1 220401080 220401264 -61792400 + LTR16C LTR ERVL 312 489 -2 484 216 29 0 chr1 220401339 220401441 -61792223 - L1PB4 LINE L1 -12 6144 6040 359 211 197 24 chr1 220401797 220402010 -61791654 + L1MCc LINE L1 3484 3733 -3208 1739 261 75 34 chr1 220402118 220402713 -61790951 + L1PA13 LINE L1 1465 2082 -4715 1978 120 14 7 chr1 220402713 220403043 -61790621 + AluSx SINE Alu 1 332 0 1739 261 75 34 chr1 220403043 220403154 -61790510 + L1PA13 LINE L1 2082 2187 -4610 350 202 0 155 chr1 220403265 220403394 -61790270 - MER63 DNA MER1_type -323 739 5 264 300 12 0 chr1 220403553 220403633 -61790031 - MIR3 SINE MIR -9 199 119 371 127 16 0 chr1 220404126 220404189 -61789475 + MADE1 DNA Mariner 17 80 0 448 280 30 23 chr1 220404438 220404570 -61789094 - MIR SINE MIR -104 158 26 2311 247 68 23 chr1 220405250 220406199 -61787465 + L1M4 LINE L1 2278 3269 -2877 21 71 0 0 chr1 220406673 220406715 -61786949 + AT_rich Low_complexity Low_complexity 1 42 0 1707 170 0 42 chr1 220406846 220407158 -61786506 - AluJb SINE Alu -13 299 1 2012 125 0 0 chr1 220407528 220407807 -61785857 - AluSg SINE Alu -27 283 5 227 128 26 0 chr1 220408263 220408302 -61785362 + L2 LINE L2 3270 3309 -4 1204 168 10 0 chr1 220409117 220409325 -61784339 - MER2 DNA MER2_type -134 211 2 1166 234 35 65 chr1 220409446 220410001 -61783663 + MER39 LTR ERV1 9 707 0 908 259 56 11 chr1 220410392 220410528 -61783136 + L1 LINE L1 2306 2434 -3712 199 53 26 26 chr1 220410528 220410566 -61783098 + (TA)n Simple_repeat Simple_repeat 1 38 0 908 259 56 11 chr1 220410566 220410715 -61782949 + L1 LINE L1 2434 2604 -3542 1086 282 64 80 chr1 220410916 220411654 -61782010 - MER20B DNA MER1_type -57 726 1 382 316 99 20 chr1 220411657 220412002 -61781662 + L1ME3 LINE L1 5511 5882 -280 33 43 0 0 chr1 220415376 220415423 -61778241 + AT_rich Low_complexity Low_complexity 1 47 0 264 294 59 29 chr1 220416221 220416323 -61777341 + MIR SINE MIR 40 144 -64 1784 187 45 11 chr1 220416616 220416969 -61776695 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr1 220419025 220419046 -61774618 + AT_rich Low_complexity Low_complexity 1 21 0 432 221 35 76 chr1 220419263 220419435 -61774229 + MER58C DNA MER1_type 51 215 0 31 68 0 0 chr1 220420319 220420378 -61773286 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr1 220420529 220420550 -61773114 + AT_rich Low_complexity Low_complexity 1 21 0 79 48 0 20 chr1 220420580 220420727 -61772937 + AT_rich Low_complexity Low_complexity 1 144 0 1383 173 35 28 chr1 220421030 220421284 -61772380 + AluSx SINE Alu 46 301 -11 213 333 33 11 chr1 220421625 220421715 -61771949 - MIR SINE MIR -70 138 47 198 103 0 0 chr1 220422045 220422074 -61771590 + (TATAG)n Simple_repeat Simple_repeat 3 31 0 274 330 84 37 chr1 220422272 220422463 -61771201 - MIR SINE MIR -29 233 34 438 288 47 0 chr1 220423707 220423877 -61769787 + L1MEc LINE L1 375 552 -6055 849 10 0 0 chr1 220423887 220423986 -61769678 - L1PA4 LINE L1 -3 6152 6054 282 268 18 36 chr1 220423986 220424098 -61769566 - MLT1A1 LTR MaLR -112 253 144 4806 233 41 82 chr1 220424182 220424427 -61769237 + L1MEc LINE L1 1691 1945 -4481 2237 97 7 0 chr1 220424427 220424737 -61768927 - AluSx SINE Alu 0 312 1 4806 233 41 82 chr1 220424737 220425985 -61767679 + L1MEc LINE L1 1945 3243 -3183 3677 35 9 4 chr1 220425985 220426448 -61767216 - L1PA4 LINE L1 0 6155 5691 4806 233 41 82 chr1 220426448 220426623 -61767041 + L1MEc LINE L1 3243 3424 -3002 273 95 0 0 chr1 220426623 220426665 -61766999 + MADE1 DNA Mariner 1 42 -38 4806 233 41 82 chr1 220426665 220427782 -61765882 + L1MEc LINE L1 3424 4586 -1840 1385 192 62 0 chr1 220427782 220428058 -61765606 + AluJb SINE Alu 1 293 -19 1938 120 3 11 chr1 220428065 220428348 -61765316 + AluSq SINE Alu 5 285 -28 4806 233 41 82 chr1 220428348 220428540 -61765124 + L1MEc LINE L1 4393 4591 -1835 853 256 16 16 chr1 220428545 220428787 -61764877 - L1M4 LINE L1 -513 6476 6235 341 285 114 0 chr1 220428821 220428944 -61764720 - L1M4 LINE L1 -3013 3944 3808 910 311 151 10 chr1 220428948 220429366 -61764298 - L1M4 LINE L1 -6379 480 4 552 289 34 27 chr1 220429366 220429629 -61764035 - L1MC4a LINE L1 -1978 5830 5566 288 316 0 0 chr1 220429792 220429871 -61763793 + CT-rich Low_complexity Low_complexity 2 80 0 2065 99 3 30 chr1 220430081 220430383 -61763281 - AluY SINE Alu -17 294 1 893 329 45 57 chr1 220430814 220431483 -61762181 - MLT2F LTR ERVL 0 663 3 1968 157 0 0 chr1 220431492 220431798 -61761866 - AluSx SINE Alu -6 306 1 315 374 40 9 chr1 220432652 220432874 -61760790 + MLT1L LTR MaLR 124 352 -263 21 0 0 0 chr1 220433515 220433536 -61760128 + AT_rich Low_complexity Low_complexity 1 21 0 462 172 55 14 chr1 220433594 220433697 -61759967 + L1MB1 LINE L1 6055 6148 -41 197 62 0 31 chr1 220433697 220433729 -61759935 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 462 172 55 14 chr1 220433729 220433744 -61759920 + L1MB1 LINE L1 6148 6161 -28 314 179 75 66 chr1 220433757 220433863 -61759801 + L1MA10 LINE L1 6226 6332 -2 183 80 0 0 chr1 220435533 220435558 -61758106 + (GA)n Simple_repeat Simple_repeat 2 26 0 213 313 90 0 chr1 220435685 220435752 -61757912 - L2 LINE L2 -15 3257 3185 303 379 151 15 chr1 220435935 220436339 -61757325 - L2 LINE L2 -348 2966 2508 6141 146 114 119 chr1 220437882 220439585 -61754079 - pTR5 LTR ERV1 0 2438 743 543 195 49 32 chr1 220439663 220439786 -61753878 + FLAM_C SINE Alu 13 137 -6 24273 159 19 22 chr1 220439794 220442290 -61751374 + L1PA8 LINE L1 160 2662 -3784 2029 148 0 7 chr1 220442290 220442600 -61751064 + AluSx SINE Alu 1 308 -4 24273 159 19 22 chr1 220442600 220442981 -61750683 + L1PA8 LINE L1 2662 3043 -3403 180 0 0 0 chr1 220442981 220443001 -61750663 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 24273 159 19 22 chr1 220443001 220446012 -61747652 + L1PA8 LINE L1 3043 6097 -349 2916 61 0 0 chr1 220446006 220446383 -61747281 - L1P LINE L1 -1115 5031 4655 * 400 73 0 0 chr1 220446383 220446436 -61747228 + L1PA5 LINE L1 6100 6154 0 2514 121 25 0 chr1 220446436 220446826 -61746838 + L1PA8 LINE L1 6069 6484 -3 671 173 27 0 chr1 220446830 220446940 -61746724 + FRAM SINE Alu 5 117 -59 486 0 0 0 chr1 220446951 220447005 -61746659 + (TTAAA)n Simple_repeat Simple_repeat 2 55 0 1235 179 65 48 chr1 220447169 220447460 -61746204 + AluJb SINE Alu 1 296 -16 22 0 0 0 chr1 220447671 220447693 -61745971 + AT_rich Low_complexity Low_complexity 1 22 0 696 259 83 4 chr1 220447945 220448173 -61745491 + L1M4 LINE L1 15 260 -6282 550 297 50 11 chr1 220449076 220449258 -61744406 - MIR SINE MIR -71 191 3 22 0 0 0 chr1 220449518 220449540 -61744124 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 220450020 220450051 -61743613 + AT_rich Low_complexity Low_complexity 1 31 0 5194 37 3 0 chr1 220450844 220451465 -61742199 - L1PA4 LINE L1 -3 6152 5530 2002 128 3 0 chr1 220451494 220451803 -61741861 + AluSx SINE Alu 1 310 0 29 0 0 0 chr1 220452515 220452544 -61741120 + AT_rich Low_complexity Low_complexity 1 29 0 2755 64 8 0 chr1 220452549 220452909 -61740755 - L1PA4 LINE L1 0 6155 5793 9922 26 2 1 chr1 220452909 220454492 -61739172 + L1PA4 LINE L1 4193 5778 -377 23 33 0 0 chr1 220454554 220454584 -61739080 + AT_rich Low_complexity Low_complexity 1 30 0 4014 200 31 37 chr1 220455052 220456045 -61737619 + L1MA7 LINE L1 4808 5792 -499 318 67 0 0 chr1 220456045 220456090 -61737574 + (TA)n Simple_repeat Simple_repeat 1 45 0 4014 200 31 37 chr1 220456090 220456481 -61737183 + L1MA7 LINE L1 5792 6184 -107 21 36 0 0 chr1 220456548 220456576 -61737088 + AT_rich Low_complexity Low_complexity 1 28 0 479 306 71 0 chr1 220456832 220457002 -61736662 + MIR SINE MIR 32 213 -49 188 67 33 0 chr1 220457022 220457052 -61736612 + (TTA)n Simple_repeat Simple_repeat 3 33 0 283 167 0 0 chr1 220457113 220457161 -61736503 - MLT1D LTR MaLR -4 501 454 853 288 21 9 chr1 220457988 220458221 -61735443 - MIR SINE MIR 0 262 27 238 341 87 8 chr1 220459107 220459233 -61734431 - L2 LINE L2 -179 3093 2958 244 383 8 0 chr1 220459377 220459497 -61734167 - L2 LINE L2 -566 2748 2628 224 423 31 0 chr1 220459708 220459805 -61733859 + L2 LINE L2 3151 3250 -22 800 279 109 0 chr1 220460500 220460848 -61732816 - L1MCc LINE L1 -3281 3660 3275 5855 112 18 0 chr1 220460859 220461731 -61731933 - L1PB2 LINE L1 -1 6150 5263 1453 318 81 36 chr1 220461742 220463078 -61730586 - L1MCc LINE L1 -4893 1530 241 232 222 0 0 chr1 220463113 220463158 -61730506 - L1MCc LINE L1 -6265 158 114 25 31 0 0 chr1 220463572 220463604 -61730060 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr1 220463617 220463652 -61730012 + AT_rich Low_complexity Low_complexity 1 35 0 582 319 120 25 chr1 220463939 220464215 -61729449 - L2 LINE L2 -420 2894 2593 291 304 0 52 chr1 220464226 220464361 -61729303 - LTR33 LTR ERVL -2 519 392 353 297 85 6 chr1 220464441 220464606 -61729058 - LTR33 LTR ERVL -238 283 106 1544 241 49 31 chr1 220464606 220465058 -61728606 - MER74C LTR ERVL 0 460 1 851 340 144 25 chr1 220465182 220465870 -61727794 - L2 LINE L2 -1082 2232 1463 354 348 51 0 chr1 220465899 220466057 -61727607 - L2 LINE L2 -2572 742 577 1398 258 131 16 chr1 220466601 220467098 -61726566 - MLT2B3 LTR ERVL 0 554 1 27672 111 4 4 chr1 220470330 220475360 -61718304 - L1PA7 LINE L1 -1 6153 1123 219 209 136 64 chr1 220475768 220475878 -61717786 + L2 LINE L2 3187 3304 -9 32 86 0 0 chr1 220476038 220476119 -61717545 + AT_rich Low_complexity Low_complexity 1 81 0 361 283 42 33 chr1 220476299 220476419 -61717245 - L2 LINE L2 0 3313 3193 26 36 0 36 chr1 220476528 220476560 -61717104 + AT_rich Low_complexity Low_complexity 1 32 -21 7789 16 0 0 chr1 220476560 220477585 -61716079 + L1PA2 LINE L1 5129 6153 -2 26 36 0 36 chr1 220477585 220477607 -61716057 + AT_rich Low_complexity Low_complexity 32 53 0 531 188 159 0 chr1 220477725 220477933 -61715731 + L1PA13 LINE L1 5923 6163 0 * 621 266 54 25 chr1 220477924 220478292 -61715372 + L1MC4 LINE L1 6276 6602 -1206 7768 17 0 0 chr1 220478840 220479834 -61713830 + L1PA2 LINE L1 5160 6153 -2 22 0 0 0 chr1 220479834 220479856 -61713808 + AT_rich Low_complexity Low_complexity 1 22 0 264 239 72 29 chr1 220479952 220480090 -61713574 - L1ME LINE L1 -731 5431 5288 1845 76 0 8 chr1 220480154 220480405 -61713259 - L1PA7 LINE L1 -1 6153 5905 194 304 147 51 chr1 220481775 220482005 -61711659 - L2 LINE L2 -837 2477 2271 200 59 29 0 chr1 220482005 220482039 -61711625 + (TA)n Simple_repeat Simple_repeat 1 35 0 281 26 26 0 chr1 220482039 220482077 -61711587 + (TG)n Simple_repeat Simple_repeat 1 39 0 194 304 147 51 chr1 220482077 220482157 -61711507 - L2 LINE L2 -1042 2272 2136 710 194 80 6 chr1 220482173 220482348 -61711316 - L1MC4a LINE L1 -87 7721 7534 646 248 82 45 chr1 220482351 220482815 -61710849 + L1MC4 LINE L1 5799 6257 -1551 3681 141 25 59 chr1 220482815 220483277 -61710387 + L1PA13 LINE L1 5470 5901 -262 234 0 0 0 chr1 220483277 220483303 -61710361 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3681 141 25 59 chr1 220483303 220483557 -61710107 + L1PA13 LINE L1 5901 6162 -1 646 248 82 45 chr1 220483557 220483917 -61709747 + L1MC4 LINE L1 6257 6602 -1206 7801 17 0 0 chr1 220484465 220485459 -61708205 + L1PA2 LINE L1 5160 6153 -2 223 320 67 13 chr1 220485497 220485572 -61708092 - L2 LINE L2 -8 3305 3227 1153 107 0 0 chr1 220485596 220485765 -61707899 - L1P LINE L1 -913 5233 5065 4215 61 29 2 chr1 220485765 220486321 -61707343 + L1PA7 LINE L1 5581 6153 -1 222 128 0 0 chr1 220486832 220486871 -61706793 + (T)n Simple_repeat Simple_repeat 1 39 0 3661 19 12 0 chr1 220487116 220487543 -61706121 + L1PA3 LINE L1 5724 6155 0 455 318 57 17 chr1 220487862 220488038 -61705626 + MIR SINE MIR 46 228 -34 217 296 296 8 chr1 220489043 220489168 -61704496 - MIR SINE MIR -43 219 59 228 259 17 17 chr1 220489608 220489666 -61703998 + MIR SINE MIR 20 77 -131 365 151 0 27 chr1 220489783 220489856 -61703808 - LTR52 LTR ERVL -336 85 15 186 326 0 0 chr1 220490047 220490090 -61703574 - MIR SINE MIR -161 101 59 676 263 79 17 chr1 220490198 220490438 -61703226 + LTR52 LTR ERVL 16 270 -151 29 70 0 0 chr1 220490466 220490523 -61703141 + AT_rich Low_complexity Low_complexity 1 57 0 2206 151 30 16 chr1 220490558 220490988 -61702676 - L1MA7 LINE L1 0 6291 5856 1051 196 59 0 chr1 220491118 220491337 -61702327 - L1MA7 LINE L1 -377 5914 5683 2246 218 54 32 chr1 220491369 220491902 -61701762 - MLT2B3 LTR ERVL -8 546 2 1093 274 78 5 chr1 220491904 220492302 -61701362 + L1 LINE L1 2600 3026 -3120 1446 136 68 25 chr1 220492302 220492581 -61701083 + THE1C LTR MaLR 85 375 0 6360 201 32 6 chr1 220492581 220493228 -61700436 + L1 LINE L1 3311 3939 -2207 7449 32 1 0 chr1 220493228 220494710 -61698954 - L1PA4 LINE L1 -1 6154 4673 6360 201 32 6 chr1 220494710 220495506 -61698158 + L1 LINE L1 3939 4793 -1353 23 33 0 0 chr1 220495625 220495655 -61698009 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr1 220496370 220496412 -61697252 + AT_rich Low_complexity Low_complexity 1 42 0 417 121 0 0 chr1 220496730 220496813 -61696851 + (CATA)n Simple_repeat Simple_repeat 2 84 0 812 266 56 9 chr1 220496822 220497293 -61696371 + MLT1F LTR MaLR 3 524 -18 210 71 0 0 chr1 220497785 220497813 -61695851 + (TTTTA)n Simple_repeat Simple_repeat 4 31 0 1367 223 128 60 chr1 220497884 220498439 -61695225 - L1MB8 LINE L1 -2 6176 5584 748 86 8 16 chr1 220498426 220498445 -61695219 - L1P LINE L1 -791 5355 5337 * 4775 82 20 5 chr1 220498445 220499103 -61694561 - L1PA7 LINE L1 -1 6153 5486 748 86 8 16 chr1 220499103 220499211 -61694453 - L1P LINE L1 -809 5337 5229 * 4545 92 9 0 chr1 220499200 220499829 -61693835 + L1P LINE L1 4068 4702 -1444 308 270 0 0 chr1 220499832 220499906 -61693758 - L1MB8 LINE L1 -605 5579 5506 * 7329 214 68 13 chr1 220499904 220502209 -61691455 + L1MA6 LINE L1 3123 5559 -2006 2035 178 49 10 chr1 220502207 220502617 -61691047 + L1MA6 LINE L1 7272 7697 -22 * 377 268 39 0 chr1 220502638 220502765 -61690899 - L1MB8 LINE L1 -1286 4860 4729 22 35 0 0 chr1 220502844 220502873 -61690791 + AT_rich Low_complexity Low_complexity 1 29 0 526 297 108 21 chr1 220504306 220504730 -61688934 - L1MB8 LINE L1 -1803 4343 3883 216 274 0 0 chr1 220504730 220504781 -61688883 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 243 286 0 11 chr1 220504781 220504872 -61688792 - L1MC4 LINE L1 -1339 6703 6614 * 278 214 95 0 chr1 220504862 220504946 -61688718 + L1MC4 LINE L1 6614 6705 -1337 236 283 0 0 chr1 220504946 220504999 -61688665 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 233 263 0 53 chr1 220505003 220505098 -61688566 + L1MC4 LINE L1 6614 6703 -1339 237 192 0 0 chr1 220505102 220505154 -61688510 + L1MC4 LINE L1 6652 6703 -1339 2092 160 27 3 chr1 220505179 220505554 -61688110 + L1PA16 LINE L1 5782 6165 -1 446 283 54 24 chr1 220505554 220505736 -61687928 - MLT1H LTR MaLR -315 234 2 632 310 37 20 chr1 220506750 220507102 -61686562 - L1MB8 LINE L1 -2347 3799 3442 1810 140 7 7 chr1 220507131 220507443 -61686221 - AluSx SINE Alu 0 312 1 1839 191 41 9 chr1 220707497 220708242 -61485422 + L1MA6 LINE L1 4507 5330 -816 672 197 0 8 chr1 220708244 220708371 -61485293 + FLAM_C SINE Alu 1 126 -17 1923 150 17 0 chr1 220708392 220708692 -61484972 + AluSx SINE Alu 1 305 -7 1812 189 71 5 chr1 220708803 220709211 -61484453 + L1MA6 LINE L1 5857 6291 -9 22 80 0 0 chr1 220709371 220709421 -61484243 + AT_rich Low_complexity Low_complexity 1 50 0 229 202 48 19 chr1 220709809 220709913 -61483751 + (TA)n Simple_repeat Simple_repeat 2 108 0 216 236 29 29 chr1 220709977 220710117 -61483547 + (TATAA)n Simple_repeat Simple_repeat 2 141 0 834 149 0 0 chr1 220710120 220710241 -61483423 - AluSq/x SINE Alu -192 121 1 185 62 0 31 chr1 220711779 220711811 -61481853 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2098 155 11 22 chr1 220712094 220712462 -61481202 + THE1B LTR MaLR 1 364 0 4346 100 20 48 chr1 220712462 220712903 -61480761 + THE1B-int LTR MaLR 1 416 -1164 1709 139 0 4 chr1 220712903 220713161 -61480503 - AluY SINE Alu -10 301 45 4346 100 20 48 chr1 220713161 220713421 -61480243 + THE1B-int LTR MaLR 416 682 -898 1190 100 0 0 chr1 220713415 220713585 -61480079 - L1MA5A LINE L1 -87 6210 6041 * 342 266 14 7 chr1 220713583 220713722 -61479942 - L1M4 LINE L1 -849 5297 5158 * 781 193 47 0 chr1 220713967 220714138 -61479526 - MER95 LTR ERV 0 431 253 582 254 27 107 chr1 220714216 220714351 -61479313 + MER63A DNA MER1_type 4 116 -1572 1303 284 72 14 chr1 220714351 220714840 -61478824 - LTR40a LTR ERVL -2 517 1 582 254 27 107 chr1 220714840 220714928 -61478736 + MER63A DNA MER1_type 116 209 -1 22 56 0 0 chr1 220715002 220715038 -61478626 + AT_rich Low_complexity Low_complexity 1 36 0 2732 3 26 0 chr1 220716082 220716391 -61477273 - AluYb8 SINE Alu -1 317 1 1525 199 3 14 chr1 220717372 220717664 -61476000 + AluJo SINE Alu 3 291 -21 2233 114 3 0 chr1 220718561 220718868 -61474796 - AluSx SINE Alu -4 308 1 6259 193 15 3 chr1 220720162 220721550 -61472114 - L1P4 LINE L1 -701 5467 4062 2691 130 24 80 chr1 220721650 220722188 -61471476 + L1PA13 LINE L1 5643 6150 -13 242 200 0 0 chr1 220722907 220722952 -61470712 + MLT2B1 LTR ERVL 1 45 -475 1719 166 127 18 chr1 220722953 220723338 -61470326 - MSTA LTR MaLR 0 428 2 8151 156 24 58 chr1 220723339 220724971 -61468693 - MSTA-int LTR MaLR 0 1580 5 791 186 122 50 chr1 220724975 220725196 -61468468 - MSTA LTR MaLR 0 428 192 1207 189 0 5 chr1 220725197 220725409 -61468255 - AluJb SINE Alu -15 297 87 884 152 146 11 chr1 220725413 220725591 -61468073 - MSTA LTR MaLR -226 202 1 1352 198 70 0 chr1 220725591 220725934 -61467730 + MLT2B1 LTR ERVL 42 450 -65 356 40 20 0 chr1 220725947 220725997 -61467667 + (CA)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr1 220726259 220726281 -61467383 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr1 220727278 220727310 -61466354 + AT_rich Low_complexity Low_complexity 1 32 0 26 74 0 0 chr1 220727332 220727386 -61466278 + AT_rich Low_complexity Low_complexity 1 54 0 261 279 180 0 chr1 220727408 220727530 -61466134 - L1MC4 LINE L1 -311 7731 7588 4801 91 15 0 chr1 220728774 220729424 -61464240 - PABL_A LTR ERV1 0 660 1 278 325 9 0 chr1 220730052 220730166 -61463498 + GA-rich Low_complexity Low_complexity 2 116 0 21 36 0 0 chr1 220730672 220730700 -61462964 + AT_rich Low_complexity Low_complexity 1 28 0 382 185 84 34 chr1 220731054 220731173 -61462491 - MLT1I LTR MaLR -18 391 267 38 81 0 0 chr1 220731565 220731652 -61462012 + AT_rich Low_complexity Low_complexity 1 87 0 760 302 96 39 chr1 220731996 220732516 -61461148 + L1MCb LINE L1 3 552 -5493 637 274 31 13 chr1 220732618 220732844 -61460820 + L1MCb LINE L1 569 798 -5247 313 306 90 40 chr1 220732975 220733197 -61460467 - L1 LINE L1 -2822 3324 3092 3991 173 32 0 chr1 220733202 220733948 -61459716 - L1PA16 LINE L1 0 6166 5397 2534 211 74 3 chr1 220733959 220734982 -61458682 + L1PB4 LINE L1 4767 5855 -301 684 256 37 28 chr1 220734983 220735198 -61458466 + MLT2B1 LTR ERVL 304 520 0 978 321 61 45 chr1 220735756 220736295 -61457369 + MER77 LTR ERV1 54 601 -4 908 318 28 36 chr1 220736436 220736905 -61456759 + L1MCb LINE L1 6 470 -5575 777 202 50 112 chr1 220736911 220737287 -61456377 + L1MCb LINE L1 1451 1803 -4761 50 15 0 15 chr1 220737353 220737371 -61456293 + AT_rich Low_complexity Low_complexity 1 18 -49 396 30 30 30 chr1 220737371 220737438 -61456226 + (TTTA)n Simple_repeat Simple_repeat 1 67 0 50 15 0 15 chr1 220737438 220737487 -61456177 + AT_rich Low_complexity Low_complexity 18 67 0 3702 236 59 72 chr1 220738015 220738205 -61455459 + L1MCb LINE L1 3008 3199 -3365 1636 233 49 46 chr1 220738205 220738839 -61454825 + MER92B LTR ERV1 1 636 0 3702 236 59 72 chr1 220738839 220739774 -61453890 + L1MCb LINE L1 3199 4145 -2419 2495 11 0 0 chr1 220739774 220740052 -61453612 + AluYa5 SINE Alu 30 307 -4 3702 236 59 72 chr1 220740052 220740127 -61453537 + L1MCb LINE L1 4145 4219 -2345 780 179 0 6 chr1 220740127 220740283 -61453381 + L1MB2 LINE L1 6006 6160 -11 3702 236 59 72 chr1 220740283 220740615 -61453049 + L1MCb LINE L1 4219 4517 -2047 1148 219 114 23 chr1 220740615 220740958 -61452706 + MLT1A2 LTR MaLR 1 374 0 3702 236 59 72 chr1 220740958 220741248 -61452416 + L1MCb LINE L1 4517 4809 -1755 3198 231 82 13 chr1 220741264 220741901 -61451763 + L1MC3 LINE L1 6807 7526 -259 180 0 0 0 chr1 220741901 220741921 -61451743 + (TA)n Simple_repeat Simple_repeat 1 20 0 3198 231 82 13 chr1 220741921 220742189 -61451475 + L1MC3 LINE L1 7526 7774 -11 35 88 0 0 chr1 220742599 220742690 -61450974 + AT_rich Low_complexity Low_complexity 1 91 0 23 0 0 0 chr1 220743857 220743880 -61449784 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 220744860 220744889 -61448775 + AT_rich Low_complexity Low_complexity 1 29 0 799 202 21 5 chr1 220745403 220745591 -61448073 - L1MD3 LINE L1 -9 7986 7796 5150 196 33 27 chr1 220745615 220746995 -61446669 - L1PA15 LINE L1 0 6816 5949 9316 222 78 7 chr1 220747042 220749533 -61444131 - L1PA15 LINE L1 -840 5957 3290 4493 226 25 16 chr1 220749642 220751221 -61442443 - L1PA15 LINE L1 -3896 2901 1288 928 244 113 0 chr1 220751348 220751631 -61442033 - Looper DNA T2_type -688 870 556 611 303 76 4 chr1 220751947 220752185 -61441479 - HAL1b LINE L1 -839 509 255 308 204 66 45 chr1 220752455 220752550 -61441114 - MLT1J LTR MaLR -321 151 64 3917 129 24 3 chr1 220754113 220754735 -61438929 + MER41B LTR ERV1 1 635 0 2528 220 30 2 chr1 220754762 220755358 -61438306 - L1PA16 LINE L1 -856 5290 4678 4320 134 53 64 chr1 220755359 220756251 -61437413 + L1PA16 LINE L1 5284 6165 -1 375 336 91 29 chr1 220756273 220756481 -61437183 + MIR SINE MIR 3 223 -39 219 229 0 0 chr1 220756636 220756697 -61436967 + (TA)n Simple_repeat Simple_repeat 2 62 0 28 48 0 0 chr1 220756734 220756776 -61436888 + AT_rich Low_complexity Low_complexity 1 42 0 541 360 139 29 chr1 220758371 220759539 -61434125 - L2 LINE L2 -463 2851 1556 953 148 0 0 chr1 220759581 220759716 -61433948 + AluSq/x SINE Alu 1 135 -177 1513 151 0 0 chr1 220759716 220759941 -61433723 + AluSx SINE Alu 1 225 -87 362 183 0 0 chr1 220759941 220760012 -61433652 + L1 LINE L1 4136 4206 -1940 225 0 0 0 chr1 220760122 220760147 -61433517 + (TA)n Simple_repeat Simple_repeat 1 25 0 300 261 57 0 chr1 220760147 220760235 -61433429 - L1MC4 LINE L1 -1339 6703 6611 207 70 0 70 chr1 220760879 220760922 -61432742 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 354 285 118 120 chr1 220761859 220762367 -61431297 + L3 LINE CR1 1070 1576 -1 1619 161 45 42 chr1 220763129 220763459 -61430205 - THE1B LTR MaLR 0 364 34 613 281 142 14 chr1 220763822 220764637 -61429027 - Charlie2 DNA MER1_type -92 2770 1851 298 368 0 13 chr1 220764637 220764792 -61428872 - Charlie2 DNA MER1_type -2532 330 178 1631 141 36 0 chr1 220764904 220765153 -61428511 + AluSq SINE Alu 3 260 -53 1929 136 50 19 chr1 220765377 220765737 -61427927 + THE1C LTR MaLR 5 375 0 247 293 147 67 chr1 220765740 220765890 -61427774 - MIR SINE MIR -78 184 23 2181 95 7 7 chr1 220766176 220766471 -61427193 + AluY SINE Alu 1 295 -16 228 175 16 48 chr1 220766896 220766959 -61426705 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 459 0 0 0 chr1 220766960 220767011 -61426653 + (TG)n Simple_repeat Simple_repeat 2 52 0 1160 246 81 32 chr1 220767536 220767979 -61425685 - MLT1C LTR MaLR -2 465 1 259 257 182 19 chr1 220769246 220769460 -61424204 + L1ME4a LINE L1 5866 6114 -7 219 189 38 0 chr1 220770211 220770264 -61423400 + (CTATT)n Simple_repeat Simple_repeat 4 58 0 2056 123 0 7 chr1 220770979 220771272 -61422392 + AluSx SINE Alu 7 297 -15 23 0 0 0 chr1 220771846 220771869 -61421795 + AT_rich Low_complexity Low_complexity 1 23 0 356 273 23 0 chr1 220772198 220772286 -61421378 - MER5C DNA MER1_type -230 94 5 216 338 20 68 chr1 220772412 220772560 -61421104 - MIR3 SINE MIR -16 192 52 201 177 40 8 chr1 220773123 220773247 -61420417 + (TA)n Simple_repeat Simple_repeat 2 129 0 394 337 66 25 chr1 220773348 220773544 -61420120 + L2 LINE L2 1186 1389 -1925 360 158 0 6 chr1 220774229 220774291 -61419373 - L1PB4 LINE L1 -60 6091 6033 21 36 0 0 chr1 220775072 220775100 -61418564 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 220776263 220776286 -61417378 + AT_rich Low_complexity Low_complexity 1 23 0 278 297 90 43 chr1 220776487 220776787 -61416877 + L1MEd LINE L1 568 881 -5238 2132 157 14 3 chr1 220777044 220777401 -61416263 + L1P3 LINE L1 3 363 -5512 4501 154 8 5 chr1 220777515 220778320 -61415344 + L1PA8A LINE L1 2758 3564 -2897 8920 137 21 10 chr1 220778325 220779938 -61413726 + L1PA8A LINE L1 4154 5769 -677 6577 188 16 35 chr1 220780038 220782351 -61411313 + L1P3 LINE L1 368 2695 -3766 2364 93 0 3 chr1 220782616 220783009 -61410655 - AluY SINE Alu 0 392 1 697 211 0 0 chr1 220783078 220783201 -61410463 - FLAM_A SINE Alu -6 127 5 1207 325 47 23 chr1 220784817 220785387 -61408277 + L1PA16 LINE L1 788 1371 -6203 383 293 0 0 chr1 220785531 220785630 -61408034 + L1PA16 LINE L1 2084 2182 -5399 1864 67 7 78 chr1 220785884 220786212 -61407452 + AluY SINE Alu 18 325 0 12333 238 33 16 chr1 220786213 220791478 -61402186 + L1PA16 LINE L1 2210 7595 -9 21 0 0 0 chr1 220791613 220791634 -61402030 + AT_rich Low_complexity Low_complexity 1 21 0 2805 7 0 0 chr1 220791821 220792130 -61401534 + AluYb8 SINE Alu 1 309 -9 28 0 0 0 chr1 220792486 220792514 -61401150 + AT_rich Low_complexity Low_complexity 1 28 0 374 264 129 7 chr1 220792610 220792765 -61400899 - MER3 DNA MER1_type -80 129 3 240 122 0 0 chr1 220793056 220793097 -61400567 + (A)n Simple_repeat Simple_repeat 1 41 0 8421 170 116 55 chr1 220793981 220796129 -61397535 + L1MCa LINE L1 18 2296 -4130 2400 185 33 12 chr1 220796178 220796664 -61397000 + L1MC1 LINE L1 5837 6332 -1 637 181 23 23 chr1 220797514 220797669 -61395995 + FLAM_C SINE Alu 1 155 0 367 244 35 9 chr1 220797796 220797911 -61395753 + AluSq/x SINE Alu 2 119 -184 21 36 0 0 chr1 220797933 220797961 -61395703 + AT_rich Low_complexity Low_complexity 1 28 0 854 181 7 0 chr1 220797969 220798118 -61395546 + FRAM SINE Alu 1 150 -26 22 56 0 0 chr1 220798130 220798166 -61395498 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr1 220798466 220798508 -61395156 + AT_rich Low_complexity Low_complexity 1 42 0 224 271 0 0 chr1 220798987 220799035 -61394629 + MIR SINE MIR 101 148 -114 36 0 0 0 chr1 220800466 220800502 -61393162 + AT_rich Low_complexity Low_complexity 1 36 0 1853 222 21 54 chr1 220802452 220803023 -61390641 - L1 LINE L1 -1240 4906 4355 1251 256 0 25 chr1 220803024 220803348 -61390316 + L1 LINE L1 4916 5231 -915 258 239 15 0 chr1 220803753 220803820 -61389844 - LTR41 LTR ERVL -9 764 697 230 254 0 15 chr1 220804096 220804163 -61389501 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1441 189 19 4 chr1 220804441 220804737 -61388927 + AluJb SINE Alu 9 308 0 241 366 0 0 chr1 220805570 220805693 -61387971 + (CCA)n Simple_repeat Simple_repeat 1 123 0 247 226 19 0 chr1 220806870 220806923 -61386741 + (CATA)n Simple_repeat Simple_repeat 3 56 0 22 0 0 0 chr1 220806983 220807005 -61386659 + AT_rich Low_complexity Low_complexity 1 22 0 285 345 48 36 chr1 220807643 220807811 -61385853 + MIR SINE MIR 11 180 -82 3881 120 27 0 chr1 220809033 220809617 -61384047 + MER4A LTR ERV1 1 600 0 2435 99 112 40 chr1 220809620 220810123 -61383541 + MER4A-int LTR ERV1 1 589 -6009 180 0 0 0 chr1 220810223 220810243 -61383421 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1956 156 131 84 chr1 220810285 220811727 -61381937 + pTR5 LTR ERV1 276 2295 -143 6957 151 35 42 chr1 220811774 220814474 -61379190 + MER4B-int LTR ERV1 198 4074 -2524 453 333 14 7 chr1 220814502 220814640 -61379024 + MIR SINE MIR 2 140 -122 2878 159 37 12 chr1 220814647 220815385 -61378279 + MER4-int LTR ERV1 3857 4860 -1738 7425 219 39 20 chr1 220815387 220817733 -61375931 + L1M1 LINE L1 2607 5022 -2543 2197 58 0 48 chr1 220817733 220818069 -61375595 + AluY SINE Alu 1 322 0 7425 219 39 20 chr1 220818069 220818649 -61375015 + L1M1 LINE L1 5022 5590 -1975 939 260 35 37 chr1 220818937 220819332 -61374332 - MER66A LTR ERV1 -40 438 97 56 39 0 0 chr1 220819543 220819620 -61374044 + AT_rich Low_complexity Low_complexity 1 77 0 420 342 15 11 chr1 220819701 220819973 -61373691 + L1M4 LINE L1 4074 4346 -1800 23 0 0 0 chr1 220820346 220820369 -61373295 + AT_rich Low_complexity Low_complexity 1 23 0 257 309 57 24 chr1 220820832 220820955 -61372709 - MIR SINE MIR -44 218 92 269 307 13 0 chr1 220820957 220821032 -61372632 - L2 LINE L2 -7 3265 3190 214 317 138 16 chr1 220821306 220821429 -61372235 + MIR SINE MIR 41 178 -84 30 45 0 0 chr1 220822828 220822872 -61370792 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr1 220823959 220823996 -61369668 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr1 220825377 220825409 -61368255 + AT_rich Low_complexity Low_complexity 1 32 0 270 299 159 86 chr1 220825721 220826267 -61367397 - L2 LINE L2 -74 3239 2667 14542 164 24 18 chr1 220826285 220827472 -61366192 + Tigger2 DNA MER2_type 2 1180 -1538 183 42 0 0 chr1 220827472 220827496 -61366168 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14542 164 24 18 chr1 220827496 220829008 -61364656 + Tigger2 DNA MER2_type 1180 2718 0 428 339 69 36 chr1 220829012 220829289 -61364375 - L2 LINE L2 -898 2416 2131 23 0 0 0 chr1 220829732 220829755 -61363909 + AT_rich Low_complexity Low_complexity 1 23 0 334 285 11 50 chr1 220829862 220830041 -61363623 + L1MEd LINE L1 1155 1326 -5046 1382 140 45 0 chr1 220830107 220830350 -61363314 - L1MA6 LINE L1 0 6300 6047 3855 134 17 3 chr1 220830353 220830996 -61362668 - L1MA6 LINE L1 -377 5923 5272 1749 214 41 55 chr1 220830996 220831455 -61362209 + MER67D LTR ERV1 49 501 -13 254 303 49 14 chr1 220831481 220831623 -61362041 + L1MEd LINE L1 1248 1394 -4990 27 0 0 0 chr1 220831623 220831650 -61362014 + AT_rich Low_complexity Low_complexity 1 27 0 2074 127 0 0 chr1 220831655 220831947 -61361717 + AluSq SINE Alu 1 292 -21 231 119 0 0 chr1 220831970 220832012 -61361652 - LTR66 LTR ERVL -171 439 398 472 330 46 10 chr1 220833765 220833962 -61359702 + MER63A DNA MER1_type 2 205 -5 242 223 36 14 chr1 220834012 220834151 -61359513 + (TA)n Simple_repeat Simple_repeat 1 142 0 22 0 0 0 chr1 220834578 220834600 -61359064 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1 220834926 220834965 -61358699 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr1 220836630 220836662 -61357002 + AT_rich Low_complexity Low_complexity 1 32 0 524 331 179 12 chr1 220837632 220838140 -61355524 + L2 LINE L2 1713 2305 -1009 29 47 0 0 chr1 220838140 220838183 -61355481 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 220838306 220838336 -61355328 + AT_rich Low_complexity Low_complexity 1 30 0 2196 96 7 0 chr1 220838445 220838736 -61354928 + AluSp SINE Alu 1 293 -20 32 0 0 0 chr1 220838975 220839007 -61354657 + AT_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr1 220839105 220839157 -61354507 + AT_rich Low_complexity Low_complexity 1 52 0 383 313 134 42 chr1 220840028 220840341 -61353323 - MLT1J2 LTR MaLR -26 424 83 6237 149 34 33 chr1 220840593 220841820 -61351844 - Tigger3b DNA MER2_type -1 1230 2 213 94 0 0 chr1 220842301 220842333 -61351331 + (A)n Simple_repeat Simple_repeat 1 32 0 286 272 25 68 chr1 220842347 220842509 -61351155 + L1MB8 LINE L1 107 261 -6281 501 318 46 63 chr1 220842606 220842791 -61350873 + L1MB8 LINE L1 485 672 -5870 2182 125 0 6 chr1 220842791 220843102 -61350562 + AluSx SINE Alu 1 309 -3 501 318 46 63 chr1 220843102 220843328 -61350336 + L1MB8 LINE L1 672 889 -5653 1302 281 82 42 chr1 220843471 220843875 -61349789 + L1MB8 LINE L1 948 1334 -5312 1959 119 11 0 chr1 220843875 220844179 -61349485 + AluSg SINE Alu 1 307 0 1302 281 82 42 chr1 220844179 220844936 -61348728 + L1MB8 LINE L1 1334 2157 -4489 949 259 49 18 chr1 220844992 220846205 -61347459 + L1MB8 LINE L1 4289 5625 -1019 2550 121 69 10 chr1 220846225 220846600 -61347064 + MLT2A1 LTR ERVL 9 360 -84 249 119 0 0 chr1 220846600 220846642 -61347022 + (TA)n Simple_repeat Simple_repeat 1 42 0 207 0 0 0 chr1 220846641 220846664 -61347000 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 2550 121 69 10 chr1 220846642 220846694 -61346970 + MLT2A1 LTR ERVL 360 438 -6 660 0 60 0 chr1 220846702 220846802 -61346862 + (TA)n Simple_repeat Simple_repeat 1 106 0 23715 92 6 5 chr1 220846837 220852318 -61341346 + HERVL-A1 LTR ERVL 1 5572 -82 3831 124 16 5 chr1 220852419 220853033 -61340631 + HERVL-A1 LTR ERVL 5034 5654 0 2768 85 47 19 chr1 220853033 220853418 -61340246 + MLT2A1 LTR ERVL 1 401 -43 225 0 0 0 chr1 220853418 220853443 -61340221 + (TA)n Simple_repeat Simple_repeat 2 26 0 2768 85 47 19 chr1 220853443 220853481 -61340183 + MLT2A1 LTR ERVL 401 436 -8 2293 232 114 4 chr1 220853497 220854307 -61339357 + L1MB8 LINE L1 5641 6584 -92 40 83 0 0 chr1 220854418 220854514 -61339150 + AT_rich Low_complexity Low_complexity 1 96 0 2265 62 3 65 chr1 220854991 220855316 -61338348 - AluY SINE Alu -6 305 1 2335 282 68 44 chr1 220855578 220855960 -61337704 - L1MEc LINE L1 -876 5339 4968 1498 108 100 19 chr1 220855960 220856229 -61337435 + L1PA11 LINE L1 5881 6171 -3 2335 282 68 44 chr1 220856229 220857380 -61336284 - L1MEc LINE L1 -1247 4968 3769 5774 152 5 33 chr1 220857393 220859270 -61334394 - L1PA11 LINE L1 0 6174 4326 6078 172 36 17 chr1 220859272 220860484 -61333180 + L1P LINE L1 1630 2864 -3282 829 289 71 14 chr1 220860480 220860864 -61332800 - L1MEc LINE L1 -2449 3766 3365 * 909 261 39 33 chr1 220860912 220861663 -61332001 - L1MEc LINE L1 -2998 3217 2318 1372 254 71 15 chr1 220861663 220862195 -61331469 + L1MB3 LINE L1 4676 5237 -909 781 199 87 15 chr1 220862213 220862419 -61331245 - MER2 DNA MER2_type -41 304 84 13183 204 33 26 chr1 220862441 220868211 -61325453 - L1MA4 LINE L1 0 7719 1886 593 314 68 12 chr1 220868176 220868424 -61325240 + L1M1 LINE L1 505 766 -6799 * 1482 268 36 27 chr1 220868438 220868886 -61324778 - L1MA4 LINE L1 -7086 479 28 527 185 54 0 chr1 220868893 220868985 -61324679 - MER2 DNA MER2_type -248 97 1 4036 212 27 13 chr1 220868985 220869916 -61323748 + L1MB3 LINE L1 5238 6180 -3 558 293 137 35 chr1 220869942 220870591 -61323073 - L1MEc LINE L1 -4087 2309 1595 1367 12 6 0 chr1 220870914 220871085 -61322579 - L1PA4 LINE L1 -743 5403 5232 6279 39 0 4 chr1 220871085 220871853 -61321811 + L1PA4 LINE L1 5390 6154 -1 234 91 0 0 chr1 220871909 220871942 -61321722 + (A)n Simple_repeat Simple_repeat 1 33 0 893 318 119 40 chr1 220873212 220873534 -61320130 + L2 LINE L2 1271 1566 -1748 234 0 0 0 chr1 220873534 220873560 -61320104 + (TA)n Simple_repeat Simple_repeat 2 27 0 1788 165 3 34 chr1 220873560 220873882 -61319782 - AluSx SINE Alu 0 312 1 893 318 119 40 chr1 220873882 220874256 -61319408 + L2 LINE L2 1565 2023 -1291 868 233 25 3 chr1 220874282 220874596 -61319068 - L1MD1 LINE L1 0 6636 6273 281 377 13 0 chr1 220874672 220874831 -61318833 - MER117 DNA MER1_type -34 163 3 1211 94 11 11 chr1 220875136 220875316 -61318348 - L1PB1 LINE L1 0 6151 5972 309 23 93 0 chr1 220875316 220875359 -61318305 + L1P5 LINE L1 5744 5790 -361 416 291 0 66 chr1 220875372 220875568 -61318096 + L1MB2 LINE L1 5754 5936 -235 * 1325 84 0 0 chr1 220875422 220875600 -61318064 + L1PB1 LINE L1 5791 5968 -183 2011 214 67 34 chr1 220875622 220876187 -61317477 - L1MD1 LINE L1 -360 6276 5693 3834 229 55 77 chr1 220876196 220877151 -61316513 - L1MD1 LINE L1 -974 5566 4666 183 42 0 0 chr1 220877151 220877175 -61316489 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3834 229 55 77 chr1 220877175 220877987 -61315677 - L1MD1 LINE L1 -1874 4666 3838 2488 231 53 53 chr1 220878007 220878914 -61314750 - L1MD1 LINE L1 -4821 1719 813 1366 235 18 6 chr1 220878937 220879269 -61314395 - L1MD1 LINE L1 -6190 350 15 375 319 7 21 chr1 220879329 220879470 -61314194 - MIR SINE MIR -5 257 119 1910 132 0 17 chr1 220879708 220880023 -61313641 - AluSx SINE Alu 0 310 1 23 86 0 0 chr1 220880794 220880852 -61312812 + AT_rich Low_complexity Low_complexity 1 58 0 244 276 70 87 chr1 220881624 220881809 -61311855 + MLT1J LTR MaLR 330 511 0 797 240 67 93 chr1 220883533 220883833 -61309831 - LTR41 LTR ERVL -479 294 3 1825 244 36 17 chr1 220883850 220884374 -61309290 + L1ME2 LINE L1 5624 6157 -7 2380 77 0 0 chr1 220885002 220885300 -61308364 - AluY SINE Alu -8 303 6 377 303 178 34 chr1 220885327 220885591 -61308073 - MLT1L LTR MaLR -171 444 143 1295 249 3 3 chr1 220885669 220885974 -61307690 + AluJo SINE Alu 1 305 -7 21 57 0 0 chr1 220886463 220886498 -61307166 + AT_rich Low_complexity Low_complexity 1 35 0 1755 166 24 0 chr1 220886512 220886801 -61306863 + AluSx SINE Alu 2 297 -15 357 234 142 61 chr1 220887089 220887350 -61306314 + L1M4 LINE L1 5114 5395 -751 23 33 0 0 chr1 220887616 220887646 -61306018 + AT_rich Low_complexity Low_complexity 1 30 0 5473 102 13 5 chr1 220888406 220889199 -61304465 - L1PA10 LINE L1 -4 6164 5366 288 313 61 18 chr1 220889597 220889760 -61303904 - MLT1E1 LTR MaLR -389 265 96 960 194 72 90 chr1 220890151 220890287 -61303377 + MER2 DNA MER2_type 6 143 -202 1463 220 14 7 chr1 220890287 220890583 -61303081 - AluJo SINE Alu -4 298 1 960 194 72 90 chr1 220890583 220890792 -61302872 + MER2 DNA MER2_type 143 345 0 405 331 30 18 chr1 220891178 220891347 -61302317 - MIR SINE MIR 0 262 92 691 153 24 0 chr1 220891467 220891591 -61302073 - L1MB7 LINE L1 -170 6014 5888 22 35 0 0 chr1 220891669 220891698 -61301966 + AT_rich Low_complexity Low_complexity 1 29 0 987 222 84 59 chr1 220892227 220892583 -61301081 - MLT1A1 LTR MaLR 0 365 1 291 348 45 5 chr1 220892592 220892793 -61300871 - LTR33A LTR ERVL 0 523 315 916 160 6 13 chr1 220892794 220892950 -61300714 + AluJo SINE Alu 1 155 -157 24 0 0 0 chr1 220893115 220893139 -61300525 + AT_rich Low_complexity Low_complexity 1 24 0 2042 139 34 8 chr1 220893177 220893529 -61300135 - THE1B LTR MaLR -3 361 1 22 35 0 0 chr1 220893557 220893586 -61300078 + AT_rich Low_complexity Low_complexity 1 29 0 201 194 60 0 chr1 220893634 220893701 -61299963 + (TA)n Simple_repeat Simple_repeat 2 72 0 391 269 10 10 chr1 220893703 220893807 -61299857 + Tigger2a DNA MER2_type 20 123 -311 1021 282 96 16 chr1 220894026 220894576 -61299088 + L1ME2 LINE L1 1628 2221 -4175 228 247 14 14 chr1 220894568 220894641 -61299023 + L1ME2 LINE L1 3039 3111 -3104 * 8806 237 40 70 chr1 220894653 220897633 -61296031 + L1M2 LINE L1 11 2901 -3948 1349 260 152 92 chr1 220897709 220897848 -61295816 + L1ME2 LINE L1 3337 3466 -2749 2770 19 0 0 chr1 220897848 220898159 -61295505 - AluYa5 SINE Alu 0 311 1 1349 260 152 92 chr1 220898159 220899986 -61293678 + L1ME2 LINE L1 3466 5420 -795 2037 259 35 29 chr1 220900139 220900835 -61292829 + L1ME2 LINE L1 5502 6201 -32 278 304 216 26 chr1 220900946 220901140 -61292524 + MIR SINE MIR 2 232 -30 262 221 12 23 chr1 220901199 220901285 -61292379 - L1ME LINE L1 -269 5852 5768 235 346 10 10 chr1 220901374 220901478 -61292186 + L2 LINE L2 2516 2619 -695 213 333 16 0 chr1 220902768 220902831 -61290833 + MIR SINE MIR 52 115 -147 1641 231 44 65 chr1 220902938 220903578 -61290086 - MLT1E2 LTR MaLR -4 622 1 2364 77 0 3 chr1 220904269 220904569 -61289095 + AluY SINE Alu 1 299 -12 21 0 0 0 chr1 220904587 220904608 -61289056 + AT_rich Low_complexity Low_complexity 1 21 0 701 220 0 0 chr1 220904668 220904800 -61288864 + FRAM SINE Alu 32 163 -13 440 226 98 0 chr1 220904871 220905004 -61288660 - Charlie1 DNA MER1_type -227 2534 2389 228 299 15 30 chr1 220905064 220905131 -61288533 - Charlie1 DNA MER1_type -2693 68 3 23 0 0 0 chr1 220905281 220905304 -61288360 + AT_rich Low_complexity Low_complexity 1 23 0 28 61 0 0 chr1 220905528 220905577 -61288087 + AT_rich Low_complexity Low_complexity 1 49 0 506 320 58 52 chr1 220906033 220906517 -61287147 + L1M4 LINE L1 4182 4668 -1478 365 307 11 45 chr1 220908055 220908231 -61285433 - L1ME1 LINE L1 -13 6153 5984 840 215 14 36 chr1 220908255 220908478 -61285186 + L1MD3 LINE L1 7670 7887 -108 647 207 5 25 chr1 220908486 220908684 -61284980 - L1 LINE L1 -2924 4284 4091 4349 243 146 41 chr1 220908700 220911000 -61282664 - L1 LINE L1 -4489 2720 12 288 88 0 18 chr1 220911048 220911105 -61282559 + L1MD3 LINE L1 7929 7984 -11 2140 117 0 0 chr1 220911131 220911430 -61282234 + AluY SINE Alu 1 299 -12 186 143 0 0 chr1 220912402 220912437 -61281227 + (T)n Simple_repeat Simple_repeat 1 35 0 2463 153 6 2 chr1 220912573 220913074 -61280590 - L1P4 LINE L1 -506 5660 5158 4589 255 13 14 chr1 220913074 220915091 -61278573 - L1PA13 LINE L1 -3402 3395 1363 1320 370 13 11 chr1 220915485 220916093 -61277571 - L1PA13 LINE L1 -6178 609 1 28 29 0 0 chr1 220916594 220916629 -61277035 + AT_rich Low_complexity Low_complexity 1 35 0 258 340 0 31 chr1 220917723 220917820 -61275844 + MIR SINE MIR 59 152 -110 922 235 50 78 chr1 220917883 220918202 -61275462 - MLT1A2 LTR MaLR 0 374 65 2223 221 87 28 chr1 220918202 220919102 -61274562 - MER52A LTR ERV1 0 1755 729 230 303 15 0 chr1 220919562 220919628 -61274036 - MER52A LTR ERV1 -1688 67 1 * 289 230 27 0 chr1 220919628 220919693 -61273971 - MLT1A2 LTR MaLR -298 67 1 24 100 0 0 chr1 220920749 220920829 -61272835 + AT_rich Low_complexity Low_complexity 1 80 0 293 308 44 69 chr1 220920985 220921144 -61272520 + MIR SINE MIR 14 168 -94 1992 127 7 23 chr1 220921266 220921573 -61272091 - AluSx SINE Alu -10 302 1 1637 240 67 10 chr1 220921723 220922140 -61271524 - MER70B LTR ERVL -137 441 1 306 344 148 8 chr1 220922160 220922282 -61271382 - L2 LINE L2 0 3272 3134 346 324 113 46 chr1 220922323 220922740 -61270924 - L2 LINE L2 -9 3304 2860 349 351 44 36 chr1 220922964 220923189 -61270475 + MIR SINE MIR 17 243 -19 2207 160 53 19 chr1 220924413 220924826 -61268838 + MSTA LTR MaLR 2 428 0 32 67 0 0 chr1 220925251 220925311 -61268353 + AT_rich Low_complexity Low_complexity 1 60 0 386 316 67 11 chr1 220925875 220926160 -61267504 + L1M3 LINE L1 4904 5204 -942 299 281 22 61 chr1 220926284 220926530 -61267134 + L1M3 LINE L1 5317 5550 -618 * 568 339 77 11 chr1 220926498 220926864 -61266800 + L1ME3A LINE L1 5558 5947 -223 885 82 0 7 chr1 220928092 220928227 -61265437 - AluY SINE Alu -2 309 176 23 68 0 0 chr1 220928227 220928271 -61265393 + AT_rich Low_complexity Low_complexity 1 44 0 36 87 0 0 chr1 220928638 220928730 -61264934 + AT_rich Low_complexity Low_complexity 1 92 0 259 349 61 15 chr1 220928747 220928879 -61264785 - LTR67 LTR ERVL -384 173 36 287 360 124 13 chr1 220929046 220929271 -61264393 + MIR SINE MIR 3 252 -10 375 281 45 35 chr1 220929575 220929773 -61263891 - MERVL LTR ERVL -907 4578 4420 2155 108 0 7 chr1 220931472 220931769 -61261895 - AluY SINE Alu -16 295 1 276 297 27 0 chr1 220931851 220931962 -61261702 + (TA)n Simple_repeat Simple_repeat 1 114 0 26 50 0 0 chr1 220932040 220932080 -61261584 + AT_rich Low_complexity Low_complexity 1 40 0 256 211 8 68 chr1 220932192 220932325 -61261339 + A-rich Low_complexity Low_complexity 5 129 0 7418 32 1 0 chr1 220933149 220934435 -61259229 + L1PA4 LINE L1 4875 6152 -3 2469 62 3 0 chr1 220936043 220936351 -61257313 - AluY SINE Alu -2 309 1 492 252 56 79 chr1 220936500 220936714 -61256950 - MER3 DNA MER1_type 0 209 1 30 0 0 0 chr1 220938622 220938652 -61255012 + AT_rich Low_complexity Low_complexity 1 30 0 296 311 24 54 chr1 220939230 220939397 -61254267 - L2 LINE L2 -16 3297 3136 998 130 0 0 chr1 220939479 220939648 -61254016 + L1MA5A LINE L1 6128 6296 -1 24 67 0 0 chr1 220939767 220939812 -61253852 + AT_rich Low_complexity Low_complexity 1 45 0 1759 123 80 37 chr1 220940268 220940617 -61253047 - THE1B LTR MaLR 0 364 1 216 0 0 0 chr1 220940969 220940993 -61252671 + (A)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr1 220941727 220941748 -61251916 + (T)n Simple_repeat Simple_repeat 1 21 0 252 281 0 0 chr1 220942243 220942307 -61251357 + (TA)n Simple_repeat Simple_repeat 2 65 0 34 0 0 0 chr1 220943484 220943518 -61250146 + AT_rich Low_complexity Low_complexity 1 34 0 1769 120 6 79 chr1 220943693 220944010 -61249654 - AluSc SINE Alu -15 294 1 23 0 0 0 chr1 220944140 220944163 -61249501 + AT_rich Low_complexity Low_complexity 1 23 0 360 352 34 13 chr1 220944490 220944874 -61248790 + L1ME LINE L1 5368 5759 -403 24 0 0 0 chr1 220945105 220945129 -61248535 + AT_rich Low_complexity Low_complexity 1 24 0 2121 119 3 3 chr1 220946406 220946716 -61246948 + AluSg SINE Alu 1 310 0 21 36 0 0 chr1 220946847 220946875 -61246789 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 220947244 220947270 -61246394 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr1 220947395 220947436 -61246228 + AT_rich Low_complexity Low_complexity 1 41 0 250 374 66 12 chr1 220948499 220948665 -61244999 - MIR3 SINE MIR -3 205 31 26 0 0 0 chr1 220948982 220949008 -61244656 + AT_rich Low_complexity Low_complexity 1 26 0 1090 229 84 86 chr1 220949701 220950679 -61242985 + L1ME1 LINE L1 4898 5890 -274 301 298 59 36 chr1 220950732 220950977 -61242687 + L1ME1 LINE L1 5890 6132 -30 261 230 27 0 chr1 220951147 220951221 -61242443 + (TA)n Simple_repeat Simple_repeat 2 77 0 26 0 0 0 chr1 220951347 220951373 -61242291 + AT_rich Low_complexity Low_complexity 1 26 0 291 237 0 105 chr1 220951619 220951733 -61241931 - L1MA10 LINE L1 -42 6292 6191 313 196 65 0 chr1 220951891 220951983 -61241681 - L1M4 LINE L1 -807 5339 5242 238 118 73 15 chr1 220951997 220952065 -61241599 + (TA)n Simple_repeat Simple_repeat 2 73 0 23 0 0 0 chr1 220952459 220952482 -61241182 + AT_rich Low_complexity Low_complexity 1 23 0 195 365 77 28 chr1 220952844 220953025 -61240639 + MIR SINE MIR 48 237 -25 1404 278 95 28 chr1 220953197 220954152 -61239512 + L1ME2 LINE L1 4066 5084 -1062 2004 261 68 75 chr1 220954217 220954456 -61239208 + L1ME2 LINE L1 5262 5501 -833 1612 178 3 36 chr1 220954456 220954765 -61238899 + AluJb SINE Alu 1 299 -13 2004 261 68 75 chr1 220954765 220955456 -61238208 + L1ME2 LINE L1 5501 6332 -2 4987 97 0 24 chr1 220955530 220956235 -61237429 - LTR12 LTR ERV1 0 688 1 2034 103 0 63 chr1 220956737 220957068 -61236596 - AluSg SINE Alu 0 310 1 310 299 55 55 chr1 220959312 220959439 -61234225 + HAL1 LINE L1 120 246 -2261 236 280 103 61 chr1 220960195 220960456 -61233208 + Charlie2 DNA MER1_type 7 278 -2504 451 204 0 2 chr1 220960469 220960613 -61233051 - MER69 DNA AcHobo -4 2522 2380 269 273 15 0 chr1 220960761 220960827 -61232837 - MER69 DNA AcHobo -2459 67 1 506 250 83 34 chr1 220960827 220961031 -61232633 + Charlie2 DNA MER1_type 280 493 -2289 3890 193 13 53 chr1 220961253 220961802 -61231862 + L1MB4 LINE L1 5164 5648 -532 2473 65 3 0 chr1 220961802 220962111 -61231553 - AluY SINE Alu -1 310 1 3890 193 13 53 chr1 220962111 220962619 -61231045 + L1MB4 LINE L1 5648 6174 -6 1365 288 26 34 chr1 220962633 220963287 -61230377 + L1M4 LINE L1 4400 5048 -1098 564 278 106 18 chr1 220963471 220963744 -61229920 - L1MCc LINE L1 -6108 315 19 29 0 0 0 chr1 220963803 220963832 -61229832 + AT_rich Low_complexity Low_complexity 1 29 0 509 245 107 38 chr1 220963984 220964529 -61229135 + Charlie2 DNA MER1_type 1907 2560 -302 3760 153 3 3 chr1 220964594 220965220 -61228444 - L1PA16 LINE L1 -5 6161 5536 825 259 0 0 chr1 220965220 220965421 -61228243 + L1P LINE L1 4851 5051 -1095 11630 239 25 30 chr1 220965438 220967167 -61226497 - L1PA16 LINE L1 -663 5503 3768 2060 112 34 3 chr1 220967167 220967462 -61226202 - AluSg SINE Alu -6 304 1 11630 239 25 30 chr1 220967462 220969408 -61224256 - L1PA16 LINE L1 -2398 3768 1788 357 265 14 7 chr1 220969450 220969597 -61224067 + Charlie2 DNA MER1_type 2647 2794 -68 48 0 0 0 chr1 220970125 220970173 -61223491 + AT_rich Low_complexity Low_complexity 1 48 0 30 27 0 0 chr1 220970408 220970445 -61223219 + AT_rich Low_complexity Low_complexity 1 37 0 229 374 69 0 chr1 220971730 220971861 -61221803 - L3 LINE CR1 -191 1386 1247 206 276 0 66 chr1 220972178 220972254 -61221410 - L3 LINE CR1 -726 851 781 230 321 176 6 chr1 220972305 220972464 -61221200 + MIR SINE MIR 74 259 -3 211 283 17 0 chr1 220972504 220972564 -61221100 - L3 LINE CR1 -828 749 689 1032 268 149 30 chr1 220972577 220973014 -61220650 - MLT1D LTR MaLR -2 503 15 290 194 48 16 chr1 220973224 220973286 -61220378 + MIR SINE MIR 81 144 -64 22 35 0 0 chr1 220973795 220973824 -61219840 + AT_rich Low_complexity Low_complexity 1 29 0 1655 44 15 0 chr1 220974371 220974549 -61219115 - AluY SINE Alu 0 311 128 396 0 0 0 chr1 220974549 220974593 -61219071 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1655 44 15 0 chr1 220974593 220974619 -61219045 - AluY SINE Alu -183 128 104 981 227 96 37 chr1 220974711 220975064 -61218600 + MLT1A2 LTR MaLR 1 374 0 2231 205 0 7 chr1 220975083 220975512 -61218152 + MLT1A2-int LTR MaLR 20 445 -1290 270 0 0 0 chr1 220975539 220975569 -61218095 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 58 0 0 chr1 220975704 220975756 -61217908 + (TG)n Simple_repeat Simple_repeat 2 53 0 183 42 0 0 chr1 220975999 220976023 -61217641 + (CA)n Simple_repeat Simple_repeat 1 24 0 24 91 0 0 chr1 220976822 220976888 -61216776 + AT_rich Low_complexity Low_complexity 1 66 0 3452 213 72 31 chr1 220978000 220979039 -61214625 - L1MA9 LINE L1 -747 6818 5737 * 3578 211 11 50 chr1 220979038 220979946 -61213718 + L1MA9 LINE L1 6845 7717 -14 1151 244 48 62 chr1 220980088 220980587 -61213077 - L1 LINE L1 -4289 3276 2785 1302 188 106 4 chr1 220981011 220981267 -61212397 - AluJo SINE Alu 0 312 31 1338 209 95 59 chr1 220981267 220981792 -61211872 + LTR10B LTR ERV1 1 544 -3 23 0 0 0 chr1 220983279 220983302 -61210362 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr1 220983757 220983794 -61209870 + AT_rich Low_complexity Low_complexity 1 37 0 3808 179 35 10 chr1 220983881 220984574 -61209090 - MER50 LTR ERV1 -24 710 1 195 42 0 0 chr1 220984755 220984779 -61208885 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 306 0 0 0 chr1 220984845 220984879 -61208785 + (TTA)n Simple_repeat Simple_repeat 3 36 0 37336 91 9 8 chr1 220984879 220985531 -61208133 - L1PA6 LINE L1 -18 6136 5486 2538 68 0 0 chr1 220985531 220985838 -61207826 - AluY SINE Alu -4 307 1 37336 91 9 8 chr1 220985838 220991312 -61202352 - L1PA6 LINE L1 -668 5486 11 386 302 0 35 chr1 220991377 220991493 -61202171 - L3b LINE CR1 -218 1365 1254 195 100 0 0 chr1 220991537 220991567 -61202097 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 756 346 120 7 chr1 220991917 220992368 -61201296 + MLT1G LTR MaLR 32 533 -57 41 36 0 0 chr1 220992977 220993032 -61200632 + AT_rich Low_complexity Low_complexity 1 55 0 347 327 187 0 chr1 220993040 220993190 -61200474 - MER5A DNA MER1_type 0 189 12 309 219 49 24 chr1 220993259 220993341 -61200323 - MER105 DNA DNA -58 146 63 4496 138 20 38 chr1 220993400 220994193 -61199471 + MER4E LTR ERV1 1 779 0 521 143 0 67 chr1 220994526 220994609 -61199055 + MER4A LTR ERV1 1 77 -587 4969 78 5 12 chr1 220994609 220995273 -61198391 - PABL_A LTR ERV1 -1 659 1 521 143 0 67 chr1 220995273 220995294 -61198370 + MER4A LTR ERV1 77 98 -566 1942 123 171 20 chr1 220995295 220995645 -61198019 + MER4A LTR ERV1 262 664 0 3919 107 4 0 chr1 220995862 220996414 -61197250 + MER41A LTR ERV1 1 554 0 199 353 112 9 chr1 220997513 220997629 -61196035 - L2 LINE L2 -475 2839 2712 264 200 0 0 chr1 220997634 220997694 -61195970 + (CA)n Simple_repeat Simple_repeat 2 61 0 193 289 0 40 chr1 220998632 220998708 -61194956 - MIR SINE MIR -60 202 130 227 266 0 0 chr1 220999224 220999288 -61194376 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 677 358 48 28 chr1 220999916 221000349 -61193315 + L1MA10 LINE L1 154 595 -5686 10161 247 45 34 chr1 221000409 221002680 -61190984 + L1MA10 LINE L1 1030 3275 -3263 3032 155 20 0 chr1 221002680 221003183 -61190481 + MER75 DNA T2_type 2 514 0 10161 247 45 34 chr1 221003183 221004289 -61189375 + L1MA10 LINE L1 3275 4368 -2170 1897 140 3 7 chr1 221004289 221004589 -61189075 + AluSc SINE Alu 4 302 -7 10161 247 45 34 chr1 221004589 221006656 -61187008 + L1MA10 LINE L1 4368 6295 -243 2369 205 71 46 chr1 221006656 221007372 -61186292 - MER50 LTR ERV1 0 734 1 10161 247 45 34 chr1 221007372 221007553 -61186111 + L1MA10 LINE L1 6295 6473 -65 850 275 55 18 chr1 221008526 221008923 -61184741 - L1M4 LINE L1 -2360 3786 3375 2150 150 14 19 chr1 221008967 221009333 -61184331 + THE1B LTR MaLR 1 364 0 11008 108 13 0 chr1 221009333 221010893 -61182771 + THE1B-int LTR MaLR 1 1580 0 2243 136 8 35 chr1 221010893 221011267 -61182397 + THE1B LTR MaLR 1 364 0 7173 225 60 28 chr1 221011365 221014166 -61179498 + L1MC3 LINE L1 4232 7115 -670 24 32 0 0 chr1 221015430 221015461 -61178203 + AT_rich Low_complexity Low_complexity 1 31 0 37 52 0 0 chr1 221016205 221016263 -61177401 + AT_rich Low_complexity Low_complexity 1 58 0 190 344 97 0 chr1 221016464 221016557 -61177107 + MIR SINE MIR 117 218 -44 1335 219 19 110 chr1 221016685 221017114 -61176550 + MLT1C LTR MaLR 1 390 0 552 323 108 40 chr1 221017497 221017752 -61175912 + L2 LINE L2 2667 2903 -410 841 146 49 27 chr1 221017752 221017937 -61175727 + MER53 DNA DNA 1 189 0 552 323 108 40 chr1 221017937 221018239 -61175425 + L2 LINE L2 2903 3258 -55 21 57 0 0 chr1 221018456 221018491 -61175173 + AT_rich Low_complexity Low_complexity 1 35 0 335 357 104 42 chr1 221018889 221019559 -61174105 - L2 LINE L2 -613 2701 1990 622 279 128 10 chr1 221020247 221020638 -61173026 + L1M4 LINE L1 2669 3105 -3041 226 275 92 8 chr1 221021019 221021150 -61172514 + HAL1 LINE L1 1551 1692 -815 330 45 0 0 chr1 221022177 221022221 -61171443 + (CA)n Simple_repeat Simple_repeat 2 45 0 866 276 92 12 chr1 221022386 221022963 -61170701 + L1ME1 LINE L1 2520 3154 -2992 1588 241 48 54 chr1 221023075 221023710 -61169954 + MLT1E2 LTR MaLR 1 624 -2 865 315 85 14 chr1 221023711 221024725 -61168939 + L1ME1 LINE L1 3216 4310 -1832 225 0 0 0 chr1 221024725 221024750 -61168914 + (CA)n Simple_repeat Simple_repeat 2 26 0 297 192 50 0 chr1 221024759 221024879 -61168785 + (TA)n Simple_repeat Simple_repeat 1 126 0 2091 270 78 34 chr1 221024967 221026718 -61166946 + L1ME1 LINE L1 4341 6163 -3 519 277 89 65 chr1 221027014 221027350 -61166314 - MER82 DNA MER2_type -29 624 281 300 50 0 0 chr1 221027377 221027417 -61166247 + THE1C LTR MaLR 295 334 -41 * 751 232 0 30 chr1 221027398 221027566 -61166098 - MER82 DNA MER2_type -289 364 202 21 57 0 0 chr1 221029847 221029882 -61163782 + AT_rich Low_complexity Low_complexity 1 35 0 857 116 14 0 chr1 221029983 221030121 -61163543 + L1MA7 LINE L1 6140 6279 -12 2582 39 3 0 chr1 221030843 221031150 -61162514 - AluY SINE Alu -3 308 1 24 32 0 0 chr1 221031740 221031771 -61161893 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 221032178 221032199 -61161465 + AT_rich Low_complexity Low_complexity 1 21 0 1006 236 82 62 chr1 221032427 221032830 -61160834 + MLT1C LTR MaLR 6 416 -51 869 154 86 96 chr1 221032851 221033071 -61160593 - AluSq SINE Alu -58 255 38 264 242 0 15 chr1 221033072 221033138 -61160526 + MLT1C LTR MaLR 403 467 0 22 35 0 0 chr1 221033306 221033335 -61160329 + AT_rich Low_complexity Low_complexity 1 29 0 2487 50 3 0 chr1 221033458 221033759 -61159905 + AluY SINE Alu 1 302 -9 416 313 168 59 chr1 221033775 221034508 -61159156 - L3 LINE CR1 -23 1554 672 29 47 0 0 chr1 221034520 221034563 -61159101 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr1 221035503 221035534 -61158130 + AT_rich Low_complexity Low_complexity 1 31 0 364 346 65 32 chr1 221035650 221036009 -61157655 + L1MEd LINE L1 930 1350 -4960 356 127 70 0 chr1 221036009 221036080 -61157584 + L1MA3 LINE L1 6230 6305 0 364 346 65 32 chr1 221036080 221036237 -61157427 + L1MEd LINE L1 1350 1500 -4810 1950 284 72 53 chr1 221036248 221037676 -61155988 + L1M4 LINE L1 3328 4782 -1364 2458 36 0 16 chr1 221037705 221038009 -61155655 + AluY SINE Alu 1 299 -12 234 247 49 12 chr1 221038009 221038090 -61155574 + L1M4 LINE L1 4867 4950 -1196 560 288 71 6 chr1 221038704 221038874 -61154790 - MIR SINE MIR -2 260 80 300 285 161 71 chr1 221038992 221039402 -61154262 + MLT1H LTR MaLR 31 477 -72 401 312 35 52 chr1 221039624 221039855 -61153809 - MIR SINE MIR 0 262 36 396 0 0 0 chr1 221040444 221040488 -61153176 + (TG)n Simple_repeat Simple_repeat 2 45 0 191 333 15 0 chr1 221040742 221040808 -61152856 + L3 LINE CR1 1509 1575 -2 2305 103 0 0 chr1 221040851 221041163 -61152501 - AluSx SINE Alu 0 312 1 519 126 0 35 chr1 221041194 221041281 -61152383 + HY4 scRNA scRNA 10 93 0 493 316 11 34 chr1 221041576 221041753 -61151911 + MIR SINE MIR 20 192 -70 852 264 24 31 chr1 221041827 221042115 -61151549 - MLT1I LTR MaLR -62 347 62 198 321 302 6 chr1 221042137 221042296 -61151368 + L2 LINE L2 2877 3082 -190 1841 159 23 28 chr1 221042514 221042867 -61150797 - MSTB1 LTR MaLR 0 432 82 586 252 43 0 chr1 221044969 221045108 -61148556 + MLT1J1 LTR MaLR 6 150 -296 801 232 0 0 chr1 221045239 221045403 -61148261 + FRAM SINE Alu 10 173 -3 1487 201 0 4 chr1 221046254 221046527 -61147137 - AluJb SINE Alu -39 273 2 704 237 31 36 chr1 221047059 221047283 -61146381 + MER58A DNA MER1_type 1 223 -1 16860 173 29 16 chr1 221047288 221050500 -61143164 + L1PB1 LINE L1 1 3332 -3535 2287 108 0 13 chr1 221050500 221050815 -61142849 + AluY SINE Alu 1 311 0 16860 173 29 16 chr1 221050815 221053719 -61139945 + L1PB1 LINE L1 3332 6197 -670 2485 108 6 0 chr1 221053720 221054071 -61139593 + L1PB1 LINE L1 6510 6862 -5 514 144 15 30 chr1 221054467 221054599 -61139065 + CT-rich Low_complexity Low_complexity 4 133 0 435 304 19 0 chr1 221054892 221055050 -61138614 + GA-rich Low_complexity Low_complexity 2 162 0 270 335 81 25 chr1 221055220 221055417 -61138247 + LTR67 LTR ERVL 348 555 -2 28 0 0 0 chr1 221056415 221056443 -61137221 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr1 221056600 221056639 -61137025 + AT_rich Low_complexity Low_complexity 1 39 0 199 19 56 74 chr1 221056642 221056696 -61136968 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 25842 61 6 1 chr1 221057764 221063845 -61129819 - L1PA5 LINE L1 -13 6141 26 2221 83 0 10 chr1 221063866 221064155 -61129509 + AluY SINE Alu 1 286 -25 21 0 0 0 chr1 221064162 221064183 -61129481 + AT_rich Low_complexity Low_complexity 1 21 0 2262 88 0 0 chr1 221064640 221064934 -61128730 - AluY SINE Alu -16 295 2 316 234 28 85 chr1 221065008 221065149 -61128515 + L1MEd LINE L1 1032 1164 -5252 334 264 61 67 chr1 221065152 221065661 -61128003 + L1MEd LINE L1 1222 1540 -4886 710 348 130 14 chr1 221065720 221066143 -61127521 - L2 LINE L2 -390 2924 2453 1462 252 99 53 chr1 221066184 221067268 -61126396 + Charlie2b DNA MER1_type 1574 2707 -75 2271 74 0 0 chr1 221068063 221068370 -61125294 + AluY SINE Alu 2 308 0 1976 233 12 10 chr1 221068447 221068859 -61124805 + MER74C LTR ERVL 1 413 -47 2032 120 0 14 chr1 221069166 221069457 -61124207 - AluSx SINE Alu -18 294 8 568 271 102 7 chr1 221069482 221069777 -61123887 - L1M4c LINE L1 -2085 4297 3975 1548 176 19 22 chr1 221069778 221070090 -61123574 + Tigger3(Golem) DNA MER2_type 2718 3028 -1 484 242 39 84 chr1 221070090 221070445 -61123219 - L1M4c LINE L1 -3695 2687 2349 585 299 97 27 chr1 221070472 221070942 -61122722 - L1M4c LINE L1 -4394 2169 1517 1822 192 40 13 chr1 221071790 221072165 -61121499 - MSTB1 LTR MaLR -10 422 38 2474 142 35 72 chr1 221072169 221072684 -61120980 + L1MA4A LINE L1 5575 6070 -233 411 141 12 0 chr1 221072688 221072773 -61120891 + L1MA4A LINE L1 6214 6299 -4 261 139 23 0 chr1 221072773 221072816 -61120848 - MSTB1 LTR MaLR -388 44 1 213 281 18 0 chr1 221072817 221072874 -61120790 + (TA)n Simple_repeat Simple_repeat 1 58 0 182 91 30 0 chr1 221074640 221074673 -61118991 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr1 221075166 221075186 -61118478 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr1 221076098 221076128 -61117536 + AT_rich Low_complexity Low_complexity 1 30 0 281 100 20 0 chr1 221077262 221077312 -61116352 + (TA)n Simple_repeat Simple_repeat 2 52 0 1042 93 0 7 chr1 221077314 221077454 -61116210 - AluSq/x SINE Alu -174 139 1 5957 113 9 3 chr1 221077705 221079087 -61114577 + L1PA14 LINE L1 4765 6157 -4 297 287 0 32 chr1 221079145 221079239 -61114425 + L2 LINE L2 3223 3313 0 183 330 94 19 chr1 221080847 221080953 -61112711 + L2 LINE L2 3196 3309 -4 28 29 0 0 chr1 221081014 221081049 -61112615 + AT_rich Low_complexity Low_complexity 1 35 0 923 285 36 29 chr1 221081337 221081748 -61111916 - L1ME3A LINE L1 -219 5951 5538 453 318 28 65 chr1 221081770 221082094 -61111570 - L1ME3A LINE L1 -747 5399 5088 226 50 50 0 chr1 221082277 221082317 -61111347 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 22 0 0 0 chr1 221082347 221082369 -61111295 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 221082589 221082610 -61111054 + AT_rich Low_complexity Low_complexity 1 21 0 3828 159 23 18 chr1 221082756 221083486 -61110178 + MER50 LTR ERV1 1 734 0 202 103 0 0 chr1 221085353 221085382 -61108282 + MIR SINE MIR 74 102 -160 4218 166 37 24 chr1 221085470 221086348 -61107316 + MER4D LTR ERV1 2 664 0 2103 94 0 47 chr1 221086845 221087164 -61106500 + AluY SINE Alu 1 304 -7 22350 101 8 4 chr1 221087428 221091494 -61102170 + L1PA7 LINE L1 2071 6150 -4 298 0 48 0 chr1 221091536 221091578 -61102086 + (TA)n Simple_repeat Simple_repeat 2 45 0 216 158 0 0 chr1 221092775 221092813 -61100851 + (TG)n Simple_repeat Simple_repeat 2 39 0 193 351 0 0 chr1 221093261 221093318 -61100346 - L2 LINE L2 -4 3268 3212 22 56 0 0 chr1 221094780 221094816 -61098848 + AT_rich Low_complexity Low_complexity 1 36 0 418 155 0 0 chr1 221095226 221095297 -61098367 - L1MA8 LINE L1 -402 5910 5840 1821 157 15 9 chr1 221095297 221095635 -61098029 + L1MA8 LINE L1 5925 6264 -27 1069 278 50 35 chr1 221095649 221096168 -61097496 + LTR38 LTR ERV1 30 556 0 36 23 0 0 chr1 221096179 221096222 -61097442 + AT_rich Low_complexity Low_complexity 1 43 0 243 216 0 0 chr1 221096287 221096338 -61097326 - L1MC3 LINE L1 -318 7467 7417 288 91 68 11 chr1 221096619 221096707 -61096957 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 27 29 0 0 chr1 221097056 221097090 -61096574 + AT_rich Low_complexity Low_complexity 1 34 0 1846 149 0 50 chr1 221098213 221098534 -61095130 - AluJb SINE Alu -7 305 1 1581 244 37 86 chr1 221098827 221099476 -61094188 + MLT1E3 LTR MaLR 1 617 -7 810 229 17 6 chr1 221099915 221100090 -61093574 + FRAM SINE Alu 1 173 -3 22 56 0 0 chr1 221100116 221100152 -61093512 + AT_rich Low_complexity Low_complexity 1 36 0 35 41 0 0 chr1 221100184 221100233 -61093431 + AT_rich Low_complexity Low_complexity 1 49 0 1745 150 91 19 chr1 221100241 221100602 -61093062 - Tigger1 DNA MER2_type -1 2417 2031 * 8184 145 65 12 chr1 221100601 221102056 -61091608 - Tigger1 DNA MER2_type -884 1534 2 22 0 0 0 chr1 221102085 221102107 -61091557 + AT_rich Low_complexity Low_complexity 1 22 0 1897 130 61 8 chr1 221102403 221102720 -61090944 + THE1B LTR MaLR 1 364 0 391 188 0 0 chr1 221102720 221102789 -61090875 + THE1B-int LTR MaLR 1 69 -1511 * 1350 128 5 0 chr1 221102788 221102992 -61090672 + THE1B-int LTR MaLR 1376 1580 0 2451 124 6 0 chr1 221102992 221103354 -61090310 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr1 221103385 221103415 -61090249 + AT_rich Low_complexity Low_complexity 1 30 0 2057 136 61 9 chr1 221104176 221104522 -61089142 - THE1B LTR MaLR 0 364 1 5087 111 3 0 chr1 221104727 221105465 -61088199 - L1PA13 LINE L1 -5 6158 5419 1126 154 0 0 chr1 221105465 221105647 -61088017 + L1PA12 LINE L1 16 197 -7384 579 297 52 62 chr1 221106094 221106498 -61087166 - MLT1J1 LTR MaLR -26 420 21 429 222 0 0 chr1 221108388 221108487 -61085177 + (TATG)n Simple_repeat Simple_repeat 2 100 0 2419 77 0 3 chr1 221108493 221108805 -61084859 - AluY SINE Alu 0 311 1 25 0 0 0 chr1 221109392 221109417 -61084247 + AT_rich Low_complexity Low_complexity 1 25 0 53 30 0 0 chr1 221109699 221109766 -61083898 + AT_rich Low_complexity Low_complexity 1 67 0 1469 200 118 53 chr1 221109807 221110258 -61083406 + MER34B LTR ERV1 11 490 -75 34 55 0 0 chr1 221110718 221110773 -61082891 + AT_rich Low_complexity Low_complexity 1 55 0 598 254 41 6 chr1 221111420 221111589 -61082075 + MLT1H LTR MaLR 1 175 -374 21 57 0 0 chr1 221111796 221111831 -61081833 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 221111906 221111927 -61081737 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr1 221112423 221112459 -61081205 + AT_rich Low_complexity Low_complexity 1 36 0 248 217 0 29 chr1 221112534 221112603 -61081061 + (TA)n Simple_repeat Simple_repeat 2 68 0 283 284 57 0 chr1 221113078 221113166 -61080498 - U6 snRNA snRNA -4 103 11 234 263 0 0 chr1 221113230 221113287 -61080377 - L1ME LINE L1 -273 5848 5792 609 362 47 30 chr1 221113766 221114172 -61079492 - L2 LINE L2 -1014 2300 1888 190 227 73 73 chr1 221114307 221114417 -61079247 + MER5C DNA MER1_type 214 323 -1 259 188 38 25 chr1 221114433 221114513 -61079151 + CT-rich Low_complexity Low_complexity 5 85 0 25 0 0 0 chr1 221115819 221115844 -61077820 + AT_rich Low_complexity Low_complexity 1 25 0 1249 232 30 21 chr1 221116347 221116683 -61076981 + L1ME3A LINE L1 5493 5831 -339 1257 150 0 43 chr1 221117460 221117694 -61075970 - AluJb SINE Alu -2 310 87 354 80 0 0 chr1 221118002 221118052 -61075612 + (TA)n Simple_repeat Simple_repeat 2 51 0 2006 150 0 0 chr1 221118052 221118338 -61075326 - AluSx SINE Alu -26 286 1 2465 63 0 0 chr1 221118784 221119086 -61074578 - AluY SINE Alu -9 302 1 499 239 59 45 chr1 221119957 221120179 -61073485 + MER106A DNA MER1_type 11 235 -1 2409 72 0 0 chr1 221121773 221122080 -61071584 + AluY SINE Alu 1 307 -4 31 58 0 0 chr1 221122574 221122626 -61071038 + AT_rich Low_complexity Low_complexity 1 52 0 245 184 0 13 chr1 221122641 221122717 -61070947 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 649 249 6 28 chr1 221122719 221122900 -61070764 - MER20 DNA MER1_type 0 219 43 28 29 0 0 chr1 221122930 221122965 -61070699 + AT_rich Low_complexity Low_complexity 1 35 0 516 299 80 64 chr1 221123101 221123310 -61070354 - L1MEc LINE L1 -3435 2694 2490 1322 230 91 65 chr1 221123310 221123815 -61069849 + MLT2B1 LTR ERVL 3 520 0 516 299 80 64 chr1 221123815 221124106 -61069558 - L1MEc LINE L1 -3639 2490 2186 337 302 0 0 chr1 221124199 221124325 -61069339 + T-rich Low_complexity Low_complexity 1 126 0 340 253 94 75 chr1 221124581 221124873 -61068791 - L1MEc LINE L1 -863 1627 1418 2707 221 5 5 chr1 221124957 221125514 -61068150 + MER41D LTR ERV1 1 557 0 285 280 50 54 chr1 221125557 221125836 -61067828 - L1MEc LINE L1 -4917 1202 925 317 318 0 9 chr1 221125968 221126078 -61067586 + MLT1H LTR MaLR 60 168 -381 261 0 0 0 chr1 221126392 221126421 -61067243 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1959 121 52 3 chr1 221126454 221126744 -61066920 - AluSq SINE Alu -9 304 1 435 275 43 14 chr1 221126767 221126905 -61066759 - L1MEc LINE L1 -5394 725 584 814 205 14 79 chr1 221127239 221127409 -61066255 + MLT1A1 LTR MaLR 1 156 -209 2806 3 0 0 chr1 221127409 221127715 -61065949 + AluY SINE Alu 1 306 -5 814 205 14 79 chr1 221127715 221127747 -61065917 + MLT1A1 LTR MaLR 156 189 -176 3646 93 19 30 chr1 221127747 221128815 -61064849 + MER11A LTR ERVK 1 1266 0 883 193 11 28 chr1 221128815 221128996 -61064668 + MLT1A1 LTR MaLR 188 365 0 220 227 23 0 chr1 221130686 221130774 -61062890 + (TA)n Simple_repeat Simple_repeat 1 90 0 1993 161 45 31 chr1 221130914 221131336 -61062328 - MSTC LTR MaLR 0 428 1 259 149 44 49 chr1 221131365 221131447 -61062217 + L1MC1 LINE L1 1728 1792 -4634 786 281 19 90 chr1 221131475 221131561 -61062103 - L1MCa LINE L1 -5152 1274 1184 1958 156 10 0 chr1 221131561 221131863 -61061801 - AluSx SINE Alu -7 305 1 786 281 19 90 chr1 221131863 221131969 -61061695 - L1MCa LINE L1 -5242 1184 1072 1504 191 30 57 chr1 221131969 221132341 -61061323 + THE1B LTR MaLR 3 364 0 786 281 19 90 chr1 221132341 221132660 -61061004 - L1MCa LINE L1 -5354 1072 798 29 60 0 0 chr1 221132790 221132840 -61060824 + AT_rich Low_complexity Low_complexity 1 50 0 255 31 0 0 chr1 221133026 221133058 -61060606 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 281 271 114 19 chr1 221133171 221133381 -61060283 + L1MC1 LINE L1 2433 2662 -3764 255 271 61 99 chr1 221133499 221133669 -61059995 + L1ME LINE L1 5410 5585 -577 1900 177 0 0 chr1 221133669 221133979 -61059685 - AluSx SINE Alu 0 312 3 255 271 61 99 chr1 221133979 221134233 -61059431 + L1ME LINE L1 5585 5818 -344 826 243 25 45 chr1 221134253 221134496 -61059168 + Charlie1 DNA MER1_type 2 239 -2522 197 279 16 33 chr1 221135314 221135375 -61058289 + L2 LINE L2 3210 3269 -3 24 67 0 0 chr1 221135917 221135962 -61057702 + AT_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr1 221136787 221136828 -61056836 + AT_rich Low_complexity Low_complexity 1 41 0 356 250 97 49 chr1 221137787 221137931 -61055733 - MIR SINE MIR -50 212 62 265 242 0 0 chr1 221138525 221138587 -61055077 + L1MC1 LINE L1 2733 2794 -3632 228 228 0 0 chr1 221138841 221138898 -61054766 + L1MC1 LINE L1 3156 3212 -3214 5155 178 19 32 chr1 221139139 221139421 -61054243 + L1MC1 LINE L1 5567 5851 -762 1548 215 0 13 chr1 221139421 221139732 -61053932 - AluJb SINE Alu -5 307 1 5155 178 19 32 chr1 221139732 221139819 -61053845 + L1MC1 LINE L1 5851 5938 -675 1396 201 34 10 chr1 221139819 221140117 -61053547 + AluJb SINE Alu 1 305 -7 5155 178 19 32 chr1 221140117 221140794 -61052870 + L1MC1 LINE L1 5938 6600 -13 2085 99 3 7 chr1 221140800 221141126 -61052538 + AluSx SINE Alu 1 325 0 328 233 52 43 chr1 221141162 221141278 -61052386 + MER112 DNA MER1_type 107 223 -37 735 320 82 26 chr1 221141301 221141691 -61051973 + L2 LINE L2 828 1239 -2075 402 365 28 24 chr1 221141710 221141959 -61051705 + L2 LINE L2 1370 1619 -1695 26 30 0 0 chr1 221142116 221142149 -61051515 + AT_rich Low_complexity Low_complexity 1 33 0 202 194 0 0 chr1 221143079 221143115 -61050549 + CT-rich Low_complexity Low_complexity 1 36 0 1422 201 66 13 chr1 221143363 221143681 -61049983 + LTR42 LTR ERVL 6 340 -155 1832 174 38 3 chr1 221143693 221144009 -61049655 + Tigger1 DNA MER2_type 26 352 -2066 593 393 50 11 chr1 221144151 221144589 -61049075 - L2 LINE L2 -5 3308 2854 204 309 99 12 chr1 221144810 221144891 -61048773 - L2 LINE L2 -496 2818 2731 527 360 122 7 chr1 221144968 221145393 -61048271 - L2 LINE L2 -604 2710 2237 1598 344 77 41 chr1 221145476 221146665 -61046999 - L2 LINE L2 -1734 1580 350 226 323 0 0 chr1 221147037 221147099 -61046565 + MER5A DNA MER1_type 128 189 0 513 136 195 34 chr1 221147417 221147535 -61046129 - MER1B DNA MER1_type 0 339 203 951 270 132 17 chr1 221147581 221147999 -61045665 + L1ME1 LINE L1 4405 4870 -1276 1971 271 112 35 chr1 221148003 221149842 -61043822 + L1M3e LINE L1 1 2709 -4399 1295 158 49 4 chr1 221149842 221150108 -61043556 + L1MA7 LINE L1 6011 6288 -3 1971 271 112 35 chr1 221150108 221150441 -61043223 + L1M3e LINE L1 2709 3015 -4093 1312 256 34 61 chr1 221150462 221151020 -61042644 + L1ME1 LINE L1 5542 6084 -82 531 298 119 51 chr1 221151266 221151619 -61042045 - MLT1J1 LTR MaLR -6 440 64 3600 148 19 5 chr1 221151685 221152280 -61041384 + LTR26 LTR ERV1 1 603 0 298 325 57 23 chr1 221152343 221152608 -61041056 - L1MC/D LINE L1 -2244 5564 5291 273 98 0 0 chr1 221153347 221153388 -61040276 + (TG)n Simple_repeat Simple_repeat 2 42 0 201 129 0 0 chr1 221153515 221153546 -61040118 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 24 53 0 0 chr1 221153559 221153597 -61040067 + AT_rich Low_complexity Low_complexity 1 38 0 2092 117 0 10 chr1 221155079 221155378 -61038286 - AluSc SINE Alu -13 296 1 21 0 0 0 chr1 221155489 221155510 -61038154 + AT_rich Low_complexity Low_complexity 1 21 0 1400 169 4 0 chr1 221155523 221155766 -61037898 - L1MC1 LINE L1 -5 6328 6085 395 165 0 88 chr1 221155770 221155861 -61037803 + L1MC1 LINE L1 6012 6094 -239 246 348 43 17 chr1 221155866 221155981 -61037683 - MIR SINE MIR -55 153 36 1037 51 28 23 chr1 221158599 221158775 -61034889 + (GAAA)n Simple_repeat Simple_repeat 3 179 0 322 281 100 32 chr1 221159170 221159419 -61034245 + HAL1 LINE L1 1345 1610 -897 269 325 24 24 chr1 221159699 221159816 -61033848 + MER5B DNA MER1_type 70 175 -3 24 0 0 0 chr1 221159880 221159904 -61033760 + AT_rich Low_complexity Low_complexity 1 24 0 730 68 0 19 chr1 221160154 221160257 -61033407 - L1PA7 LINE L1 -2 6152 6052 26 30 0 0 chr1 221160265 221160298 -61033366 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr1 221160415 221160450 -61033214 + AT_rich Low_complexity Low_complexity 1 35 0 5150 129 39 1 chr1 221160463 221161597 -61032067 + L1PA16 LINE L1 4987 6157 -9 1868 104 0 4 chr1 221162673 221162923 -61030741 + AluSc SINE Alu 47 295 -14 207 0 0 0 chr1 221162926 221162949 -61030715 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 418 182 11 9 chr1 221163021 221163296 -61030368 + AluJo SINE Alu 1 314 0 396 346 38 28 chr1 221163522 221163733 -61029931 + L2 LINE L2 2478 2690 -624 220 189 19 19 chr1 221163738 221163791 -61029873 + (TA)n Simple_repeat Simple_repeat 2 54 0 192 324 20 39 chr1 221164320 221164422 -61029242 + MER5A DNA MER1_type 84 183 -6 470 255 10 0 chr1 221164445 221164543 -61029121 + MER5A DNA MER1_type 10 108 -81 1126 42 0 7 chr1 221166546 221166689 -61026975 + L1PA4 LINE L1 6013 6154 -1 185 318 39 31 chr1 221167282 221167411 -61026253 - L2 LINE L2 -1303 2011 1882 21 89 0 0 chr1 221170371 221170427 -61023237 + AT_rich Low_complexity Low_complexity 1 56 0 961 268 50 84 chr1 221170439 221170962 -61022702 + L1MCa LINE L1 3 432 -5613 539 29 14 0 chr1 221171004 221171073 -61022591 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 2157 241 42 21 chr1 221171202 221171995 -61021669 + L1MCa LINE L1 570 1367 -4851 934 245 68 53 chr1 221171997 221172566 -61021098 + L1MCa LINE L1 1420 2089 -4475 1174 271 12 64 chr1 221173417 221173837 -61019827 - LTR40b LTR ERVL -64 398 1 2998 188 13 8 chr1 221175320 221175733 -61017931 - LTR26B LTR ERV1 0 531 113 2442 147 29 5 chr1 221175733 221176149 -61017515 + MSTB LTR MaLR 1 426 0 2998 188 13 8 chr1 221176149 221176263 -61017401 - LTR26B LTR ERV1 -418 113 1 287 241 105 30 chr1 221177102 221177235 -61016429 + MER112 DNA MER1_type 68 210 -50 229 157 48 24 chr1 221177689 221177772 -61015892 + GA-rich Low_complexity Low_complexity 3 87 0 926 331 61 37 chr1 221177838 221178708 -61014956 - Charlie7 DNA MER1_type -1605 1007 117 327 309 134 19 chr1 221178733 221179002 -61014662 - MLT1F LTR MaLR 0 542 243 22 0 0 0 chr1 221179767 221179789 -61013875 + AT_rich Low_complexity Low_complexity 1 22 0 1500 282 67 19 chr1 221180405 221181051 -61012613 - MER20B DNA MER1_type -79 704 28 270 344 8 23 chr1 221181722 221181853 -61011811 - L3 LINE CR1 -800 777 649 4783 156 17 4 chr1 221184703 221185516 -61008148 + L1PA15 LINE L1 5330 6159 -6 1875 164 138 5 chr1 221185787 221186165 -61007499 + MSTA LTR MaLR 1 428 0 301 120 0 20 chr1 221186165 221186215 -61007449 + MSTA-int LTR MaLR 1 49 -1602 1283 73 36 122 chr1 221186215 221186462 -61007202 + AluY SINE Alu 72 297 -14 543 78 55 1 chr1 221186464 221186566 -61007098 + MSTA-int LTR MaLR 41 133 -1447 430 0 67 0 chr1 221186716 221186776 -61006888 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 21 36 0 0 chr1 221187402 221187430 -61006234 + AT_rich Low_complexity Low_complexity 1 28 0 475 234 19 2 chr1 221189835 221189982 -61003682 + MER58A DNA MER1_type 37 223 -1 417 341 78 58 chr1 221190076 221190560 -61003104 - L2 LINE L2 0 3313 2820 197 62 83 0 chr1 221191990 221192038 -61001626 + (TA)n Simple_repeat Simple_repeat 1 52 0 214 49 24 24 chr1 221192201 221192242 -61001422 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 387 142 91 10 chr1 221192259 221192573 -61001091 + (TA)n Simple_repeat Simple_repeat 1 339 0 322 254 188 54 chr1 221193650 221193874 -60999790 + MLT1H1 LTR MaLR 251 510 -45 357 217 43 52 chr1 221194280 221194395 -60999269 + LTR33 LTR ERVL 3 116 -405 5643 116 8 29 chr1 221195733 221197168 -60996496 - L1PA11 LINE L1 -8 6166 4751 19174 190 37 15 chr1 221197314 221201442 -60992222 - L1P LINE L1 -1098 5048 831 376 334 38 91 chr1 221201561 221201881 -60991783 + L2 LINE L2 2674 2976 -338 246 348 52 7 chr1 221202413 221202548 -60991116 - L2 LINE L2 -226 3046 2906 1953 114 0 0 chr1 221202827 221203123 -60990541 + AluSq SINE Alu 22 317 0 2335 84 3 0 chr1 221203619 221203917 -60989747 - AluY SINE Alu -12 299 1 23 86 0 0 chr1 221204074 221204132 -60989532 + AT_rich Low_complexity Low_complexity 1 58 0 1433 222 93 23 chr1 221204554 221205001 -60988663 - MER31A LTR ERV1 0 661 6 393 145 43 2 chr1 221206007 221206141 -60987523 + MER53 DNA DNA 18 187 -2 890 210 18 31 chr1 221206367 221206591 -60987073 - MER106A DNA MER1_type -15 221 1 21 0 0 0 chr1 221206949 221206970 -60986694 + AT_rich Low_complexity Low_complexity 1 21 0 255 229 0 12 chr1 221207362 221207445 -60986219 + (TA)n Simple_repeat Simple_repeat 2 83 0 1416 211 0 20 chr1 221207520 221207823 -60985841 - AluJo SINE Alu -15 297 1 314 300 17 58 chr1 221208723 221208843 -60984821 - L2 LINE L2 0 3313 3199 446 258 57 50 chr1 221209183 221209342 -60984322 + MER63A DNA MER1_type 43 202 -8 3795 199 87 33 chr1 221210948 221211697 -60981967 - MER52A LTR ERV1 0 1755 1049 2084 69 3 78 chr1 221211697 221212016 -60981648 - AluY SINE Alu -16 295 1 3795 199 87 33 chr1 221212016 221212790 -60980874 - MER52A LTR ERV1 -706 1049 1 486 0 0 0 chr1 221213010 221213064 -60980600 + (TG)n Simple_repeat Simple_repeat 2 55 0 210 361 84 37 chr1 221213349 221213540 -60980124 + L3 LINE CR1 1244 1443 -134 2168 114 0 0 chr1 221213557 221213855 -60979809 + AluY SINE Alu 4 301 -10 21 0 0 0 chr1 221215107 221215128 -60978536 + AT_rich Low_complexity Low_complexity 1 21 0 270 393 16 22 chr1 221215232 221215415 -60978249 + MER5A DNA MER1_type 5 186 -3 291 140 0 0 chr1 221216009 221216059 -60977605 + (CA)n Simple_repeat Simple_repeat 1 50 0 24 61 0 0 chr1 221216731 221216764 -60976900 + AT_rich Low_complexity Low_complexity 1 33 0 845 250 28 9 chr1 221217267 221217479 -60976185 + L1ME LINE L1 5493 5708 -462 37 26 0 0 chr1 221217495 221217534 -60976130 + AT_rich Low_complexity Low_complexity 1 39 0 37 0 0 0 chr1 221217581 221217618 -60976046 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr1 221217708 221217738 -60975926 + AT_rich Low_complexity Low_complexity 1 30 0 296 188 14 29 chr1 221217746 221217815 -60975849 + L1ME LINE L1 5764 5831 -339 823 140 15 0 chr1 221218489 221218625 -60975039 + L1MA9 LINE L1 6014 6151 -161 399 21 0 0 chr1 221218625 221218673 -60974991 + (CA)n Simple_repeat Simple_repeat 1 48 0 185 65 32 0 chr1 221218673 221218704 -60974960 + (GA)n Simple_repeat Simple_repeat 1 32 0 326 289 0 10 chr1 221218801 221218898 -60974766 + L1ME LINE L1 5685 5780 -341 1164 259 76 78 chr1 221218946 221219201 -60974463 + MER21B LTR ERV1 133 387 -476 3550 176 47 41 chr1 221219201 221219976 -60973688 + LTR19C LTR ERV1 1 779 0 1164 259 76 78 chr1 221219976 221220325 -60973339 + MER21B LTR ERV1 387 736 -127 269 291 0 12 chr1 221221248 221221287 -60972377 + (CATA)n Simple_repeat Simple_repeat 4 42 -46 1056 191 15 0 chr1 221221287 221221486 -60972178 - MER6B DNA MER2_type -4 206 5 269 291 0 12 chr1 221221486 221221532 -60972132 + (CATA)n Simple_repeat Simple_repeat 42 88 0 1422 171 69 11 chr1 221221601 221221875 -60971789 + AluJb SINE Alu 13 302 -10 21 36 0 0 chr1 221222505 221222533 -60971131 + AT_rich Low_complexity Low_complexity 1 28 0 268 310 118 32 chr1 221222715 221222902 -60970762 + L2 LINE L2 2192 2394 -920 24 32 0 0 chr1 221223240 221223271 -60970393 + AT_rich Low_complexity Low_complexity 1 31 0 495 326 52 10 chr1 221223423 221223616 -60970048 + MIR SINE MIR 48 248 -14 489 175 0 0 chr1 221225564 221225644 -60968020 + AluJb SINE Alu 6 85 -227 1092 198 17 128 chr1 221225644 221226120 -60967544 - MER50 LTR ERV1 0 734 312 742 236 70 23 chr1 221226135 221226683 -60966981 + LTR18A LTR ERVL 1 355 -2 869 230 0 6 chr1 221226704 221226869 -60966795 + HERVL18 LTR ERVL 2 165 -5882 599 221 0 16 chr1 221226918 221227045 -60966619 + LTR18A LTR ERVL 233 357 0 322 253 209 47 chr1 221227056 221227309 -60966355 - MER50 LTR ERV1 -431 303 10 1201 171 37 19 chr1 221227313 221227529 -60966135 + AluJb SINE Alu 80 299 -13 1285 137 120 17 chr1 221227571 221227805 -60965859 - Tigger3(Golem) DNA MER2_type 0 3029 2772 582 194 70 31 chr1 221227814 221227943 -60965721 - Tigger3(Golem) DNA MER2_type -2895 134 1 286 178 40 6 chr1 221228066 221228240 -60965424 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr1 221228747 221228768 -60964896 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 221229273 221229303 -60964361 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr1 221229368 221229419 -60964245 + AT_rich Low_complexity Low_complexity 1 51 0 198 191 11 43 chr1 221229600 221229694 -60963970 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1220 287 90 31 chr1 221229704 221231167 -60962497 + L1MEc LINE L1 1315 2820 -3395 645 93 0 0 chr1 221231170 221231256 -60962408 + THE1C LTR MaLR 290 375 0 317 353 31 46 chr1 221231402 221231492 -60962172 - L2 LINE L2 -274 3039 2949 240 35 0 0 chr1 221231492 221231521 -60962143 + (TAA)n Simple_repeat Simple_repeat 2 30 0 317 353 31 46 chr1 221231521 221231660 -60962004 - L2 LINE L2 -364 2949 2811 2328 62 0 23 chr1 221231660 221231966 -60961698 - AluY SINE Alu -12 299 1 317 353 31 46 chr1 221231966 221231996 -60961668 - L2 LINE L2 -502 2811 2782 932 266 179 43 chr1 221232014 221232594 -60961070 - L2 LINE L2 -718 2596 1938 2794 13 0 0 chr1 221233654 221233964 -60959700 + AluYb8 SINE Alu 1 310 -8 2679 179 14 68 chr1 221234702 221235224 -60958440 + MLT2B3 LTR ERVL 1 550 -4 198 0 0 0 chr1 221235224 221235246 -60958418 + (TC)n Simple_repeat Simple_repeat 2 23 0 2679 179 14 68 chr1 221235246 221235264 -60958400 + MLT2B3 LTR ERVL 550 510 -44 195 42 0 0 chr1 221235264 221235288 -60958376 + (CA)n Simple_repeat Simple_repeat 2 25 0 2679 179 14 68 chr1 221235288 221235332 -60958332 + MLT2B3 LTR ERVL 509 554 0 442 330 81 11 chr1 221236359 221236620 -60957044 + MER110 LTR ERV1 206 484 -7 429 190 100 0 chr1 221237503 221237603 -60956061 + MER110A LTR ERV1 53 162 -306 246 167 100 0 chr1 221237726 221237786 -60955878 + MER110A LTR ERV1 250 315 -153 302 196 36 18 chr1 221238045 221238181 -60955483 + (TTATA)n Simple_repeat Simple_repeat 1 138 0 335 209 44 0 chr1 221238533 221238624 -60955040 - MER103 DNA DNA -2 164 70 1838 206 3 11 chr1 221239036 221239400 -60954264 + MLT1A1 LTR MaLR 3 363 -2 278 397 16 0 chr1 221239522 221239648 -60954016 - L3 LINE CR1 -455 1122 995 559 272 33 110 chr1 221239785 221240057 -60953607 - MER93a LTR ERV1 -56 346 67 7494 28 9 0 chr1 221240102 221241405 -60952259 - L1PA3 LINE L1 0 6155 4846 2430 37 0 0 chr1 221241405 221241700 -60951964 + L1PA3 LINE L1 4545 4839 -1307 679 309 63 4 chr1 221241796 221242048 -60951616 + MLT1J LTR MaLR 1 267 -244 1325 204 40 14 chr1 221242308 221242583 -60951081 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr1 221242586 221242606 -60951058 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 836 259 68 8 chr1 221242860 221243123 -60950541 - MER46C DNA MER2_type -56 282 4 459 333 54 42 chr1 221243842 221244103 -60949561 + MLT1I LTR MaLR 139 402 -7 298 281 0 22 chr1 221244905 221244994 -60948670 + MLT1H LTR MaLR 53 139 -410 23 0 0 0 chr1 221245021 221245044 -60948620 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 221245082 221245104 -60948560 + AT_rich Low_complexity Low_complexity 1 22 0 712 259 0 6 chr1 221245736 221245906 -60947758 + AluJb SINE Alu 60 228 -84 244 200 0 43 chr1 221246019 221246089 -60947575 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 193 107 40 67 chr1 221246167 221246242 -60947422 + (TTATA)n Simple_repeat Simple_repeat 4 76 0 26 30 0 0 chr1 221246242 221246275 -60947389 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr1 221246390 221246412 -60947252 + AT_rich Low_complexity Low_complexity 1 22 0 1629 195 3 7 chr1 221246452 221246759 -60946905 - AluJo SINE Alu -6 306 1 22 70 0 0 chr1 221247095 221247138 -60946526 + AT_rich Low_complexity Low_complexity 1 43 0 574 219 46 20 chr1 221247453 221247604 -60946060 + L1MA2 LINE L1 16 170 -7395 * 8971 142 117 32 chr1 221247593 221249392 -60944272 + L1MA2 LINE L1 1399 3350 -4215 802 242 0 0 chr1 221249397 221249579 -60944085 + L1MA2 LINE L1 3865 4046 -3519 7728 160 22 33 chr1 221249583 221250556 -60943108 + L1MA2 LINE L1 5063 6045 -1678 317 157 0 0 chr1 221250556 221250607 -60943057 + MADE1 DNA Mariner 1 51 -29 7728 160 22 33 chr1 221250607 221252286 -60941378 + L1MA2 LINE L1 6045 7722 -1 405 256 34 28 chr1 221252304 221252480 -60941184 + L1ME2 LINE L1 2246 2422 -3724 1233 88 71 0 chr1 221252484 221252654 -60941010 + AluSg SINE Alu 10 191 -119 228 67 0 0 chr1 221252664 221252694 -60940970 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 409 146 207 0 chr1 221252706 221252854 -60940810 - AluJb SINE Alu 0 350 186 1175 210 65 36 chr1 221252956 221253263 -60940401 - AluJb SINE Alu 0 315 1 968 281 117 20 chr1 221253275 221254027 -60939637 + L1ME2 LINE L1 2450 3274 -2872 416 277 112 30 chr1 221254039 221254468 -60939196 + L1ME2 LINE L1 4381 4844 -1302 1059 154 40 53 chr1 221254553 221254780 -60938884 - L1MA7 LINE L1 -217 6074 5851 947 171 10 0 chr1 221254780 221254971 -60938693 + L1MA7 LINE L1 6097 6291 0 2163 260 61 38 chr1 221254978 221256208 -60937456 + L1ME2 LINE L1 4901 6163 -1 2065 194 42 0 chr1 221256452 221256885 -60936779 - L1MA6 LINE L1 -13 6287 5837 387 186 16 145 chr1 221256886 221256956 -60936708 + L1MA5A LINE L1 5739 5788 -509 243 0 0 0 chr1 221256956 221256983 -60936681 + (CA)n Simple_repeat Simple_repeat 2 28 0 387 186 16 145 chr1 221256983 221257036 -60936628 + L1MA5A LINE L1 5788 5846 -451 385 303 72 10 chr1 221257214 221257409 -60936255 + MLT1L LTR MaLR 405 611 -4 207 146 0 0 chr1 221259172 221259213 -60934451 + (GA)n Simple_repeat Simple_repeat 1 41 0 1746 205 24 24 chr1 221259440 221259821 -60933843 + LTR8 LTR ERV1 311 691 0 21 57 0 0 chr1 221260659 221260694 -60932970 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr1 221260823 221260855 -60932809 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr1 221261918 221261951 -60931713 + AT_rich Low_complexity Low_complexity 1 33 0 340 346 58 29 chr1 221262132 221262337 -60931327 + MLT1I LTR MaLR 2 212 -197 322 324 9 19 chr1 221262765 221262873 -60930791 + L2 LINE L2 3199 3305 -8 1431 182 36 72 chr1 221263220 221263582 -60930082 + MER65C LTR ERV1 1 349 -112 502 149 69 0 chr1 221263579 221263666 -60929998 + LTR51 LTR ERV1 579 671 0 * 363 325 93 10 chr1 221263739 221263933 -60929731 - MIR SINE MIR -5 257 48 200 288 96 0 chr1 221264447 221264520 -60929144 - MIR3 SINE MIR -47 161 82 27 73 0 0 chr1 221265670 221265725 -60927939 + AT_rich Low_complexity Low_complexity 1 55 0 551 270 9 77 chr1 221265797 221266019 -60927645 - L2 LINE L2 -649 2665 2459 645 263 77 0 chr1 221266166 221266360 -60927304 - MIR SINE MIR -42 220 12 23 68 0 0 chr1 221266468 221266512 -60927152 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr1 221266699 221266727 -60926937 + AT_rich Low_complexity Low_complexity 1 28 0 354 218 29 17 chr1 221266975 221267149 -60926515 + (TAA)n Simple_repeat Simple_repeat 2 177 0 278 291 76 70 chr1 221267295 221267453 -60926211 + MIR SINE MIR 34 192 -70 22 0 0 0 chr1 221267641 221267663 -60926001 + AT_rich Low_complexity Low_complexity 1 22 0 261 313 84 6 chr1 221267735 221267914 -60925750 - L1M4 LINE L1 -2202 3944 3752 246 286 122 79 chr1 221268089 221268393 -60925271 + L2 LINE L2 1345 1661 -1653 818 287 101 128 chr1 221268403 221269223 -60924441 + L2 LINE L2 1867 2708 -605 2244 68 0 4 chr1 221269223 221269504 -60924160 - AluY SINE Alu -3 308 29 818 287 101 128 chr1 221269504 221269600 -60924064 + L2 LINE L2 2708 2805 -508 1887 178 0 0 chr1 221269600 221269909 -60923755 - AluJb SINE Alu -3 309 1 818 287 101 128 chr1 221269909 221270216 -60923448 + L2 LINE L2 2805 3054 -259 24 0 0 0 chr1 221271543 221271567 -60922097 + AT_rich Low_complexity Low_complexity 1 24 0 670 301 28 69 chr1 221272406 221272795 -60920869 + L2 LINE L2 664 1036 -2278 229 243 14 95 chr1 221272976 221273050 -60920614 + MER5B DNA MER1_type 10 77 -101 578 231 64 13 chr1 221273284 221273440 -60920224 - MER69A DNA AcHobo -13 164 1 351 0 0 0 chr1 221273493 221273532 -60920132 + (A)n Simple_repeat Simple_repeat 1 39 0 1556 169 61 9 chr1 221274152 221274495 -60919169 - MER46B DNA MER2_type 0 236 1 253 390 95 17 chr1 221274512 221274743 -60918921 - MIR SINE MIR -8 254 6 287 347 153 0 chr1 221275092 221275216 -60918448 + L2 LINE L2 3129 3271 -1 541 299 54 20 chr1 221276879 221277083 -60916581 - MIR SINE MIR -29 233 23 2307 205 35 44 chr1 221277155 221277524 -60916140 - MLT2B2 LTR ERVL -2 513 149 2132 128 7 3 chr1 221277524 221277830 -60915834 - AluSc SINE Alu -2 307 1 2307 205 35 44 chr1 221277830 221277978 -60915686 - MLT2B2 LTR ERVL -366 149 1 296 202 96 77 chr1 221278008 221278112 -60915552 + LTR8 LTR ERV1 26 131 -560 * 1010 238 17 9 chr1 221278108 221278339 -60915325 + MER87 LTR ERV1 211 443 -98 2090 90 14 4 chr1 221278379 221278657 -60915007 - AluSg SINE Alu -7 303 23 1193 181 15 52 chr1 221278849 221279119 -60914545 + LTR8 LTR ERV1 1 260 -431 489 241 26 26 chr1 221279120 221279236 -60914428 + AluSp SINE Alu 1 116 -197 713 130 9 0 chr1 221279236 221279344 -60914320 + LTR8 LTR ERV1 583 691 0 21 0 0 0 chr1 221279783 221279804 -60913860 + AT_rich Low_complexity Low_complexity 1 21 0 1826 140 0 34 chr1 221281050 221281371 -60912293 - AluSx SINE Alu 0 313 3 440 305 40 29 chr1 221282524 221282698 -60910966 - L2 LINE L2 -6 3307 3132 203 276 13 40 chr1 221283203 221283279 -60910385 + GA-rich Low_complexity Low_complexity 6 79 0 505 277 168 32 chr1 221283318 221283538 -60910126 - MIR SINE MIR -1 261 12 22 35 0 0 chr1 221283554 221283583 -60910081 + AT_rich Low_complexity Low_complexity 1 29 0 206 390 19 0 chr1 221284418 221284523 -60909141 + MIR3 SINE MIR 88 194 -14 1522 326 150 29 chr1 221284877 221285536 -60908128 - L2 LINE L2 -505 2809 2231 1497 206 124 61 chr1 221285536 221286011 -60907653 - MLT1D LTR MaLR 0 505 1 1522 326 150 29 chr1 221286011 221286611 -60907053 - L2 LINE L2 -1083 2231 1398 232 359 122 42 chr1 221286901 221287352 -60906312 + L2 LINE L2 2482 2968 -346 371 217 0 43 chr1 221287450 221287542 -60906122 + MER21B LTR ERV1 1 88 -775 1675 94 86 0 chr1 221287580 221287824 -60905840 + AluSp SINE Alu 38 302 -11 1986 286 53 37 chr1 221287848 221288546 -60905118 + MER21B LTR ERV1 98 806 -57 316 379 35 0 chr1 221288674 221288790 -60904874 + L2 LINE L2 3148 3267 -5 191 163 0 23 chr1 221288924 221288967 -60904697 + (TA)n Simple_repeat Simple_repeat 1 42 0 228 152 0 0 chr1 221288973 221289019 -60904645 + LTR66 LTR ERVL 394 439 -171 470 195 13 13 chr1 221289019 221289178 -60904486 + (TA)n Simple_repeat Simple_repeat 2 160 0 23 0 0 0 chr1 221289353 221289376 -60904288 + AT_rich Low_complexity Low_complexity 1 23 0 704 189 8 0 chr1 221289412 221289539 -60904125 + Tigger1 DNA MER2_type 24 151 -2267 * 1254 164 0 5 chr1 221289536 221289750 -60903914 + Tigger1 DNA MER2_type 2203 2415 -3 216 263 158 26 chr1 221291759 221291873 -60901791 + MIR SINE MIR 131 259 -3 1416 258 32 38 chr1 221292110 221292674 -60900990 - MLT2F LTR ERVL -55 608 1 21 0 0 0 chr1 221296239 221296260 -60897404 + AT_rich Low_complexity Low_complexity 1 21 0 1772 127 96 0 chr1 221296269 221296560 -60897104 - L1PA16 LINE L1 -5 6161 5843 1708 255 26 23 chr1 221296856 221297441 -60896223 + MER67D LTR ERV1 49 658 -3 586 353 191 18 chr1 221297654 221298591 -60895073 - L2 LINE L2 -349 2965 1867 1127 208 4 29 chr1 221298985 221299230 -60894434 + AluJo SINE Alu 1 239 -73 1130 113 51 0 chr1 221299387 221299582 -60894082 - L1MA3 LINE L1 -1 6304 6100 7324 185 16 6 chr1 221299686 221301137 -60892527 - L1 LINE L1 -1191 6374 4909 2634 156 13 29 chr1 221301139 221301760 -60891904 - L1 LINE L1 -3814 3751 3138 922 122 0 20 chr1 221301758 221301905 -60891759 + L1M1 LINE L1 2810 2953 -4612 * 692 178 48 0 chr1 221301895 221302041 -60891623 - L1 LINE L1 -4436 3129 2977 * 531 122 0 61 chr1 221302041 221302139 -60891525 - L1PA8A LINE L1 0 6131 6040 687 23 0 11 chr1 221302140 221302227 -60891437 - L1PA8A LINE L1 -136 5995 5910 3748 126 10 5 chr1 221302330 221302910 -60890754 + L1P LINE L1 3984 4566 -1580 * 15105 163 60 10 chr1 221302907 221305621 -60888043 - L1 LINE L1 -4571 2994 147 230 345 70 35 chr1 221306764 221306906 -60886758 - MIR SINE MIR -70 192 46 2621 160 31 1 chr1 221307983 221308605 -60885059 - L1M2 LINE L1 -743 5403 4869 1211 194 20 12 chr1 221308602 221308855 -60884809 + L1MA7 LINE L1 5530 5784 -507 * 2226 153 39 29 chr1 221309128 221309617 -60884047 + L1MA7 LINE L1 5792 6285 -6 21 36 0 0 chr1 221309661 221309689 -60883975 + AT_rich Low_complexity Low_complexity 1 28 0 2040 209 158 52 chr1 221310133 221310879 -60882785 + LTR1B LTR ERV1 1 825 -1 2112 159 28 14 chr1 221311610 221311969 -60881695 - THE1B LTR MaLR 0 364 1 7081 193 15 6 chr1 221311969 221313121 -60880543 - THE1B-int LTR MaLR 0 1580 419 3145 200 26 24 chr1 221313121 221313742 -60879922 + MER21B LTR ERV1 202 823 -40 4051 149 13 45 chr1 221313746 221313813 -60879851 - LTR8A LTR ERV1 0 727 659 4194 130 31 12 chr1 221313813 221314489 -60879175 + LTR8 LTR ERV1 1 689 -2 4051 149 13 45 chr1 221314489 221315172 -60878492 - LTR8A LTR ERV1 -68 659 1 555 338 42 52 chr1 221315449 221315925 -60877739 + MLT1J LTR MaLR 26 496 -15 461 291 26 41 chr1 221316535 221316803 -60876861 + L1ME1 LINE L1 4904 5167 -979 299 26 0 0 chr1 221316817 221316856 -60876808 - LTR24 LTR ERV1 0 467 429 1993 136 4 0 chr1 221316856 221317136 -60876528 + AluSx SINE Alu 1 281 -31 642 177 8 16 chr1 221317179 221317303 -60876361 - LTR24 LTR ERV1 -29 438 316 1696 143 159 73 chr1 221317304 221317676 -60875988 - MER4A LTR ERV1 0 664 261 230 190 52 0 chr1 221317676 221317734 -60875930 - MER4A LTR ERV1 -566 98 38 228 120 40 20 chr1 221317834 221317884 -60875780 - MER4A LTR ERV1 -613 51 1 1644 153 12 64 chr1 221317884 221318210 -60875454 - LTR24 LTR ERV1 -149 318 10 2800 142 18 2 chr1 221318264 221318714 -60874950 + LTR24B LTR ERV1 1 457 -119 766 103 17 0 chr1 221319222 221319338 -60874326 + LTR24B LTR ERV1 453 570 -6 451 140 11 11 chr1 221319358 221319451 -60874213 + CT-rich Low_complexity Low_complexity 2 94 0 2022 247 58 86 chr1 221319498 221319720 -60873944 + L1ME1 LINE L1 5255 5482 -684 1501 203 13 13 chr1 221319720 221320030 -60873634 + AluJo SINE Alu 1 310 -2 2022 247 58 86 chr1 221320030 221320403 -60873261 + L1ME1 LINE L1 5482 5817 -349 2593 170 89 27 chr1 221320403 221320963 -60872701 + LTR49 LTR ERV1 1 595 0 2022 247 58 86 chr1 221320963 221321300 -60872364 + L1ME1 LINE L1 5817 6162 -4 214 272 74 12 chr1 221321313 221321394 -60872270 + L2 LINE L2 2980 3065 -207 2843 7 0 0 chr1 221321439 221321746 -60871918 - AluYa5 SINE Alu -4 307 1 1207 101 0 51 chr1 221322327 221322505 -60871159 - AluSc SINE Alu -8 301 133 421 176 0 0 chr1 221322591 221322665 -60870999 + MER6A DNA MER2_type 102 175 -430 * 1823 167 6 0 chr1 221322660 221322971 -60870693 + MER6A DNA MER2_type 293 605 0 1214 180 43 62 chr1 221324687 221324992 -60868672 - AluJb SINE Alu -13 299 1 713 216 131 5 chr1 221325155 221325354 -60868310 - MLT1D LTR MaLR 0 505 282 207 161 0 0 chr1 221325569 221325600 -60868064 + (CA)n Simple_repeat Simple_repeat 1 31 0 1006 232 4 30 chr1 221325871 221326108 -60867556 - MER68 LTR ERV1 0 562 332 313 308 0 0 chr1 221326368 221326459 -60867205 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 2191 79 13 50 chr1 221327075 221327392 -60866272 - AluY SINE Alu -6 305 1 242 268 0 45 chr1 221327516 221327628 -60866036 + GA-rich Low_complexity Low_complexity 1 107 0 2441 90 0 3 chr1 221327756 221328067 -60865597 + AluSg SINE Alu 1 310 0 1508 224 148 51 chr1 221328202 221328688 -60864976 - MLT1F LTR MaLR -9 533 1 341 337 29 18 chr1 221329176 221329455 -60864209 - MLT1F-int LTR MaLR -779 592 311 310 194 14 0 chr1 221329588 221329659 -60864005 - MLT1F LTR MaLR -2 565 494 1377 234 41 38 chr1 221329659 221330114 -60863550 - MLT1C LTR MaLR 0 467 1 802 264 117 72 chr1 221330122 221330550 -60863114 - MLT1F LTR MaLR -76 466 20 234 243 19 19 chr1 221331028 221331131 -60862533 + (TA)n Simple_repeat Simple_repeat 2 104 0 250 288 15 0 chr1 221332051 221332117 -60861547 + GA-rich Low_complexity Low_complexity 2 68 0 245 311 0 0 chr1 221332119 221332180 -60861484 - MER2 DNA MER2_type 0 345 285 279 213 238 12 chr1 221332183 221332263 -60861401 - MER2 DNA MER2_type -247 98 1 706 271 41 114 chr1 221332482 221332630 -60861034 + MER34 LTR ERV1 1 158 -384 2119 126 3 0 chr1 221332630 221332931 -60860733 + AluSx SINE Alu 1 302 -10 706 271 41 114 chr1 221332931 221333318 -60860346 + MER34 LTR ERV1 158 497 -45 1825 149 149 11 chr1 221334498 221334874 -60858790 - MSTA LTR MaLR 0 428 1 8146 157 79 16 chr1 221334874 221336358 -60857306 - MSTA-int LTR MaLR 0 1580 3 1612 180 134 33 chr1 221336360 221336749 -60856915 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr1 221336933 221336957 -60856707 + AT_rich Low_complexity Low_complexity 1 24 0 227 318 77 31 chr1 221337155 221337350 -60856314 + L1MC/D LINE L1 5385 5588 -2220 1362 208 123 57 chr1 221337400 221337872 -60855792 + MLT1D LTR MaLR 3 505 0 240 253 44 11 chr1 221337972 221338063 -60855601 + L1P LINE L1 3178 3271 -2875 4072 118 142 22 chr1 221338103 221339425 -60854239 + pTR5 LTR ERV1 736 2606 0 648 266 36 40 chr1 221339437 221339741 -60853923 + L1M4 LINE L1 3307 3609 -2537 529 308 29 17 chr1 221339743 221339983 -60853681 - L1MEc LINE L1 -5792 604 362 463 348 21 17 chr1 221340003 221340290 -60853374 - L1MEc LINE L1 -6090 306 19 35 41 0 0 chr1 221340627 221340676 -60852988 + AT_rich Low_complexity Low_complexity 1 49 0 225 196 0 0 chr1 221341112 221341168 -60852496 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 4220 203 23 44 chr1 221341579 221343327 -60850337 - L1MA10 LINE L1 -38 6296 4583 361 259 23 69 chr1 221343376 221343507 -60850157 - L1MC5 LINE L1 -523 7438 7314 28 48 0 0 chr1 221343512 221343554 -60850110 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 221344238 221344267 -60849397 + AT_rich Low_complexity Low_complexity 1 29 0 252 233 14 14 chr1 221344410 221344483 -60849181 + (TA)n Simple_repeat Simple_repeat 1 73 0 582 297 89 10 chr1 221347720 221347922 -60845742 + MIR SINE MIR 4 221 -41 21 0 0 0 chr1 221347931 221347952 -60845712 + AT_rich Low_complexity Low_complexity 1 21 0 257 284 0 43 chr1 221349682 221349798 -60843866 - MLT1K LTR MaLR -27 561 451 845 238 103 20 chr1 221350516 221350836 -60842828 - MSTD LTR MaLR 0 396 1 24 32 0 0 chr1 221352677 221352708 -60840956 + AT_rich Low_complexity Low_complexity 1 31 0 1622 193 0 50 chr1 221353259 221353560 -60840104 + AluJb SINE Alu 6 291 -21 492 59 0 0 chr1 221354356 221354424 -60839240 + (CA)n Simple_repeat Simple_repeat 1 68 0 234 307 29 44 chr1 221354724 221354861 -60838803 + L2 LINE L2 3125 3259 -54 24 53 0 0 chr1 221355202 221355240 -60838424 + AT_rich Low_complexity Low_complexity 1 38 0 1971 89 50 4 chr1 221355724 221356005 -60837659 + AluY SINE Alu 7 300 -11 21 36 0 0 chr1 221356548 221356576 -60837088 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 221357492 221357528 -60836136 + AT_rich Low_complexity Low_complexity 1 36 0 242 283 22 33 chr1 221357538 221357630 -60836034 - L2 LINE L2 -3 3269 3179 195 316 65 118 chr1 221357727 221357989 -60835675 - L2 LINE L2 -353 2961 2687 2354 87 0 0 chr1 221357989 221358288 -60835376 - AluY SINE Alu -12 299 1 2243 119 0 0 chr1 221358297 221358607 -60835057 - AluSg SINE Alu 0 310 1 195 316 65 118 chr1 221358607 221358733 -60834931 - L2 LINE L2 -635 2679 2584 1455 170 0 30 chr1 221358795 221359066 -60834598 + THE1C LTR MaLR 1 263 -112 863 269 42 27 chr1 221359340 221359600 -60834064 + MLT1H LTR MaLR 1 264 -285 228 318 15 0 chr1 221359922 221359988 -60833676 - L2 LINE L2 -995 2319 2253 2279 72 24 3 chr1 221360257 221360549 -60833115 + AluY SINE Alu 2 299 -12 244 331 68 22 chr1 221360842 221360999 -60832665 - MIR SINE MIR -57 151 28 272 114 0 0 chr1 221361838 221361882 -60831782 + L1PA7 LINE L1 6108 6151 -3 230 244 0 0 chr1 221362798 221362843 -60830821 - L2 LINE L2 -17 3296 3252 370 224 55 35 chr1 221362893 221363081 -60830583 + L1MCc LINE L1 30 694 -5864 241 277 61 66 chr1 221363472 221363701 -60829963 + L1MCc LINE L1 758 1116 -5306 279 247 0 41 chr1 221363905 221364002 -60829662 + L1MCc LINE L1 1820 1912 -5210 432 0 0 0 chr1 221364027 221364075 -60829589 + (CA)n Simple_repeat Simple_repeat 1 48 0 306 286 175 32 chr1 221364113 221364267 -60829397 + L1MC4 LINE L1 7496 7671 -371 208 139 28 0 chr1 221364278 221364314 -60829350 + GA-rich Low_complexity Low_complexity 2 38 0 24 0 0 0 chr1 221365448 221365472 -60828192 + AT_rich Low_complexity Low_complexity 1 24 0 2257 148 5 13 chr1 221365701 221366079 -60827585 + THE1C LTR MaLR 1 375 0 27 0 0 0 chr1 221366526 221366553 -60827111 + AT_rich Low_complexity Low_complexity 1 27 0 990 331 83 34 chr1 221367452 221368198 -60825466 - L2 LINE L2 -928 2386 1604 1352 182 11 19 chr1 221368823 221369087 -60824577 + AluJb SINE Alu 42 303 -9 2629 164 91 6 chr1 221369462 221369981 -60823683 + L1MC1 LINE L1 5482 6044 -289 2006 228 132 18 chr1 221369981 221370472 -60823192 + MER44D DNA MER2_type 1 602 -3 1160 175 40 0 chr1 221370474 221370697 -60822967 + L1MC1 LINE L1 6042 6273 -60 735 153 0 38 chr1 221370761 221370892 -60822772 - FLAM_C SINE Alu -7 126 1 1768 230 113 18 chr1 221370902 221371506 -60822158 - L1MD2 LINE L1 -4 6355 5695 311 254 0 0 chr1 221373365 221373432 -60820232 - AluJ/FLAM SINE Alu -233 69 3 236 203 17 0 chr1 221374391 221374450 -60819214 - MLT2B2 LTR ERVL 0 520 461 216 0 0 0 chr1 221374450 221374474 -60819190 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 1626 240 85 25 chr1 221374479 221374924 -60818740 - MLT2B2 LTR ERVL -38 477 6 1076 251 41 38 chr1 221375198 221375414 -60818250 + MER2 DNA MER2_type 2 221 -124 2342 71 0 29 chr1 221375414 221375725 -60817939 - AluY SINE Alu -9 302 1 1076 251 41 38 chr1 221375725 221375851 -60817813 + MER2 DNA MER2_type 221 345 0 585 234 0 0 chr1 221375967 221376095 -60817569 - FLAM_C SINE Alu -3 130 3 343 299 85 28 chr1 221376442 221376653 -60817011 + L1M4 LINE L1 2488 2710 -3436 476 303 73 33 chr1 221376896 221377501 -60816163 + L1M4 LINE L1 4217 4845 -1301 412 371 43 11 chr1 221377603 221377789 -60815875 + LTR33 LTR ERVL 12 203 -318 1562 243 35 15 chr1 221378018 221378421 -60815243 + LTR52 LTR ERVL 9 419 -2 1984 214 103 46 chr1 221378422 221378918 -60814746 + LTR52-int LTR ERVL 3 526 -3030 272 368 53 7 chr1 221378961 221379113 -60814551 + LTR52-int LTR ERVL 514 672 -2884 605 271 54 23 chr1 221379121 221379342 -60814322 + LTR52-int LTR ERVL 790 1017 -2539 13453 221 46 37 chr1 221380196 221381483 -60812181 + L1MA6 LINE L1 546 1820 -4665 1397 228 11 7 chr1 221381483 221381768 -60811896 + AluJo SINE Alu 5 290 -22 13453 221 46 37 chr1 221381768 221382288 -60811376 + L1MA6 LINE L1 1820 2334 -4151 2037 145 3 0 chr1 221382288 221382599 -60811065 + AluSx SINE Alu 1 312 0 13453 221 46 37 chr1 221382599 221383899 -60809765 + L1MA6 LINE L1 2334 3620 -2865 189 0 0 0 chr1 221383899 221383920 -60809744 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 13453 221 46 37 chr1 221383920 221385959 -60807705 + L1MA6 LINE L1 3620 5737 -748 2250 137 31 28 chr1 221385959 221386004 -60807660 + L1MA6 LINE L1 6057 6100 -382 2131 151 5 24 chr1 221386004 221386375 -60807289 - THE1B LTR MaLR 0 364 1 2250 137 31 28 chr1 221386375 221386754 -60806910 + L1MA6 LINE L1 6100 6482 0 4258 197 40 23 chr1 221386761 221387711 -60805953 + LTR52-int LTR ERVL 1130 2095 -3590 4149 249 54 12 chr1 221387893 221389056 -60804608 + LTR52-int LTR ERVL 2107 3556 0 632 301 74 34 chr1 221389167 221389492 -60804172 + MLT1J2 LTR MaLR 105 442 -8 401 231 28 19 chr1 221390073 221390181 -60803483 - LTR41 LTR ERVL -5 768 660 404 286 62 16 chr1 221390642 221390834 -60802830 - LTR41 LTR ERVL -572 201 1 847 362 22 8 chr1 221391138 221391539 -60802125 + LTR16A LTR ERVL 32 438 -12 509 167 19 9 chr1 221392145 221392253 -60801411 - L1MA8 LINE L1 -4 6287 6179 560 236 57 7 chr1 221392497 221392637 -60801027 - LTR52 LTR ERVL -269 152 6 28 71 0 0 chr1 221394533 221394589 -60799075 + AT_rich Low_complexity Low_complexity 1 56 0 2540 226 24 39 chr1 221395314 221396010 -60797654 - MER76 LTR ERV 0 688 3 324 169 31 15 chr1 221396104 221396169 -60797495 + L1MC/D LINE L1 5470 5535 -2250 37 52 0 0 chr1 221396686 221396744 -60796920 + AT_rich Low_complexity Low_complexity 1 58 0 1612 185 47 72 chr1 221397782 221398225 -60795439 - MSTB1 LTR MaLR 0 432 1 28 99 0 0 chr1 221398226 221398317 -60795347 + AT_rich Low_complexity Low_complexity 1 91 0 29 28 0 0 chr1 221398360 221398396 -60795268 + AT_rich Low_complexity Low_complexity 1 36 0 33 0 0 0 chr1 221398901 221398934 -60794730 + AT_rich Low_complexity Low_complexity 1 33 0 29 70 0 0 chr1 221399141 221399198 -60794466 + AT_rich Low_complexity Low_complexity 1 57 0 3952 161 35 32 chr1 221399268 221400051 -60793613 + L1MB2 LINE L1 5380 6164 -7 35 0 0 0 chr1 221400051 221400086 -60793578 + AT_rich Low_complexity Low_complexity 1 35 0 597 275 34 21 chr1 221400087 221400320 -60793344 + L1MEc LINE L1 2216 2451 -3945 1289 86 0 11 chr1 221400321 221400495 -60793169 - AluY SINE Alu -139 172 1 2445 52 0 3 chr1 221400713 221401020 -60792644 + AluY SINE Alu 1 306 -5 238 252 43 108 chr1 221402124 221402207 -60791457 + L2 LINE L2 3183 3255 -58 6654 230 63 59 chr1 221402207 221402747 -60790917 - Charlie1 DNA MER1_type -2 2759 2223 2134 113 0 0 chr1 221402747 221403048 -60790616 - AluY SINE Alu -10 301 1 6654 230 63 59 chr1 221403048 221405253 -60788411 - Charlie1 DNA MER1_type -538 2223 2 238 252 43 108 chr1 221405253 221405308 -60788356 + L2 LINE L2 3255 3312 -1 21 36 0 0 chr1 221405456 221405484 -60788180 + AT_rich Low_complexity Low_complexity 1 28 0 280 330 53 0 chr1 221405914 221406008 -60787656 + L2 LINE L2 3159 3257 -15 190 270 32 32 chr1 221406498 221406561 -60787103 + MIR SINE MIR 44 106 -102 29 0 0 0 chr1 221407063 221407092 -60786572 + AT_rich Low_complexity Low_complexity 1 29 0 7543 23 0 0 chr1 221407092 221408050 -60785614 - L1PA4 LINE L1 -3 6152 5198 2036 32 0 0 chr1 221408055 221408302 -60785362 - L1PA4 LINE L1 -1007 5139 4893 861 258 66 7 chr1 221409295 221409736 -60783928 - L1ME LINE L1 -651 5515 5053 330 250 57 7 chr1 221409784 221409924 -60783740 - L1ME LINE L1 -3104 3042 2896 4850 146 45 27 chr1 221409962 221410898 -60782766 - L1MA4 LINE L1 -10 6290 5338 1483 227 16 30 chr1 221410954 221411320 -60782344 - L1M2 LINE L1 -6485 364 4 328 266 191 47 chr1 221411327 221411647 -60782017 - L1ME LINE L1 -3302 2844 2479 24 53 0 0 chr1 221411837 221411875 -60781789 + AT_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr1 221413558 221413582 -60780082 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1123 257 0 24 chr1 221413781 221414069 -60779595 + AluJo SINE Alu 6 286 -26 279 243 9 75 chr1 221414669 221414776 -60778888 - MIR SINE MIR 0 262 163 184 289 24 12 chr1 221414768 221414851 -60778813 + MIR SINE MIR 165 248 -14 * 247 292 14 0 chr1 221416365 221416437 -60777227 + MLT1F1 LTR MaLR 53 125 -442 501 199 0 66 chr1 221416447 221416583 -60777081 + L1MC3 LINE L1 7200 7326 -459 688 64 0 0 chr1 221416610 221416704 -60776960 - AluY SINE Alu -2 309 216 1935 173 56 37 chr1 221416706 221416952 -60776712 + L1MC3 LINE L1 7334 7594 -191 1837 118 0 24 chr1 221416952 221417262 -60776402 + AluSg SINE Alu 1 303 0 1935 173 56 37 chr1 221417262 221417443 -60776221 + L1MC3 LINE L1 7594 7770 -15 528 325 120 37 chr1 221417956 221418612 -60775052 + L1M4 LINE L1 3589 4299 -1847 5376 148 34 31 chr1 221419995 221421063 -60772601 - MER11C LTR ERVK 0 1071 1 22 0 0 0 chr1 221421562 221421584 -60772080 + AT_rich Low_complexity Low_complexity 1 22 0 2538 235 25 58 chr1 221421844 221422588 -60771076 + MER72 LTR ERV1 3 722 0 2039 191 35 23 chr1 221423297 221423726 -60769938 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr1 221423774 221423796 -60769868 + AT_rich Low_complexity Low_complexity 1 22 0 204 379 0 0 chr1 221423807 221423873 -60769791 - L2 LINE L2 -221 3051 2986 1334 312 15 44 chr1 221424881 221425471 -60768193 - MLT2B3 LTR ERVL 0 524 5 1623 295 77 25 chr1 221425475 221426075 -60767589 + MER76 LTR ERV 58 688 0 312 259 13 4 chr1 221426221 221426468 -60767196 + (TA)n Simple_repeat Simple_repeat 1 249 0 24 0 0 0 chr1 221426644 221426668 -60766996 + AT_rich Low_complexity Low_complexity 1 24 0 225 180 0 20 chr1 221426959 221427009 -60766655 + LTR66 LTR ERVL 390 438 -172 399 213 22 0 chr1 221427230 221427366 -60766298 + (TA)n Simple_repeat Simple_repeat 2 140 0 3520 166 8 5 chr1 221427508 221428152 -60765512 + L1MA4 LINE L1 5655 6300 0 21 0 0 0 chr1 221428644 221428665 -60764999 + AT_rich Low_complexity Low_complexity 1 21 0 1702 226 77 5 chr1 221429618 221430021 -60763643 + MSTB1 LTR MaLR 1 432 0 279 0 0 0 chr1 221430101 221430132 -60763532 + (TG)n Simple_repeat Simple_repeat 1 31 0 306 67 0 0 chr1 221430132 221430177 -60763487 + (GA)n Simple_repeat Simple_repeat 2 46 0 245 419 8 0 chr1 221431003 221431127 -60762537 - MIR3 SINE MIR -35 173 49 313 61 82 0 chr1 221431197 221431246 -60762418 - MLT2A1 LTR ERVL 0 444 392 215 170 21 0 chr1 221431249 221431296 -60762368 + (TA)n Simple_repeat Simple_repeat 2 49 0 338 67 0 0 chr1 221431296 221431341 -60762323 + HERVL LTR ERVL 5464 5508 -146 188 122 24 0 chr1 221431415 221431456 -60762208 + (TA)n Simple_repeat Simple_repeat 1 42 0 919 41 172 0 chr1 221431636 221431781 -60761883 - HERVL LTR ERVL -146 5508 5339 420 20 0 0 chr1 221431789 221431838 -60761826 + (TA)n Simple_repeat Simple_repeat 2 50 0 2814 105 5 0 chr1 221431838 221432220 -60761444 - MLT2A1 LTR ERVL -60 384 1 11309 81 16 21 chr1 221432220 221433756 -60759908 - HERVL-A1 LTR ERVL 0 5654 4126 1835 214 100 18 chr1 221433760 221434810 -60758854 + SATR1 Satellite Satellite 1 1135 -114 2337 65 13 0 chr1 221434814 221435124 -60758540 - HERVL-A1 LTR ERVL -5337 317 4 398 73 0 0 chr1 221435126 221435181 -60758483 - MLT2A1 LTR ERVL 0 444 390 207 0 0 0 chr1 221435181 221435204 -60758460 + (TA)n Simple_repeat Simple_repeat 1 23 0 360 214 0 82 chr1 221435204 221435302 -60758362 + L1MC4 LINE L1 6614 6703 -1339 2997 94 2 0 chr1 221435306 221435709 -60757955 - MLT2A1 LTR ERVL -40 404 1 216 0 0 0 chr1 221435801 221435825 -60757839 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2189 93 0 0 chr1 221435825 221436103 -60757561 - AluSg SINE Alu -32 278 1 227 364 93 7 chr1 221436454 221436594 -60757070 + L2 LINE L2 2196 2347 -967 22 0 0 0 chr1 221436803 221436825 -60756839 + AT_rich Low_complexity Low_complexity 1 22 0 799 247 75 56 chr1 221436851 221437156 -60756508 + L1MCa LINE L1 1127 1425 -5001 1150 291 21 21 chr1 221437156 221437575 -60756089 + LTR52 LTR ERVL 1 419 -2 799 247 75 56 chr1 221437575 221438031 -60755633 + L1MCa LINE L1 1425 1996 -4430 713 196 78 6 chr1 221438093 221438282 -60755382 + L1MC3 LINE L1 6868 7042 -743 615 294 0 16 chr1 221438282 221438466 -60755198 - MLT1A1 LTR MaLR 0 365 185 7274 39 8 8 chr1 221438613 221439534 -60754130 - L1PA4 LINE L1 -743 5403 4483 6184 30 0 0 chr1 221439534 221440259 -60753405 + L1PA4 LINE L1 5425 6151 -4 296 68 0 45 chr1 221440276 221440320 -60753344 - MLT1A1 LTR MaLR -354 42 1 866 186 36 0 chr1 221440324 221440491 -60753173 + L1MC3 LINE L1 7055 7227 -558 216 0 0 0 chr1 221440529 221440553 -60753111 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 814 201 162 78 chr1 221440577 221440911 -60752753 + MLT1A1 LTR MaLR 4 365 0 2117 162 15 95 chr1 221440911 221441288 -60752376 + L1MC3 LINE L1 7279 7602 -183 2635 116 8 0 chr1 221441288 221441660 -60752004 + THE1C LTR MaLR 1 375 0 2117 162 15 95 chr1 221441660 221441820 -60751844 + L1MC3 LINE L1 7602 7773 -12 5198 173 9 36 chr1 221442450 221443523 -60750141 - L1MA5 LINE L1 -3 6297 5254 2119 177 5 14 chr1 221444828 221445161 -60748503 + MLT1A1 LTR MaLR 1 332 -33 1586 213 46 0 chr1 221445161 221445490 -60748174 - MER2 DNA MER2_type 0 344 1 2119 177 5 14 chr1 221445490 221445524 -60748140 + MLT1A1 LTR MaLR 332 365 0 997 247 39 36 chr1 221446109 221446473 -60747191 + L1ME2 LINE L1 5770 6134 -30 180 125 0 0 chr1 221446857 221446889 -60746775 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 345 145 0 0 chr1 221446888 221446950 -60746714 + (TG)n Simple_repeat Simple_repeat 1 62 0 616 315 75 34 chr1 221447269 221447590 -60746074 + MLT1J2 LTR MaLR 109 442 -8 24 0 0 0 chr1 221447631 221447655 -60746009 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr1 221447704 221447731 -60745933 + AT_rich Low_complexity Low_complexity 1 27 0 568 313 49 21 chr1 221448869 221449112 -60744552 + MIR SINE MIR 10 259 -3 2464 313 105 27 chr1 221449129 221449381 -60744283 - L2 LINE L2 -1 3312 3081 1379 208 35 27 chr1 221449381 221449752 -60743912 - MLT1A2 LTR MaLR 0 374 1 2464 313 105 27 chr1 221449752 221451062 -60742602 - L2 LINE L2 -232 3081 1647 210 248 25 25 chr1 221451826 221451947 -60741717 + A-rich Low_complexity Low_complexity 3 123 0 22 0 0 0 chr1 221451961 221451983 -60741681 + AT_rich Low_complexity Low_complexity 1 22 0 30 83 0 0 chr1 221452257 221452329 -60741335 + AT_rich Low_complexity Low_complexity 1 72 0 231 331 0 84 chr1 221452405 221452481 -60741183 + MER5A DNA MER1_type 60 120 -69 2580 42 0 3 chr1 221452481 221452790 -60740874 - AluY SINE Alu -3 308 1 231 331 0 84 chr1 221452790 221452855 -60740809 + MER5A DNA MER1_type 120 189 0 262 107 0 107 chr1 221453014 221453070 -60740594 + MLT1E3 LTR MaLR 571 620 -4 270 81 0 0 chr1 221453416 221453453 -60740211 + (TA)n Simple_repeat Simple_repeat 1 37 0 2217 79 0 26 chr1 221453752 221454056 -60739608 + AluY SINE Alu 1 296 -15 3689 182 83 55 chr1 221454085 221454959 -60738705 - MER21A LTR ERV1 -28 903 5 266 203 34 0 chr1 221454959 221455018 -60738646 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1811 266 119 3 chr1 221455204 221455769 -60737895 - MLT1E1 LTR MaLR -24 630 1 1405 134 9 0 chr1 221456191 221456422 -60737242 + L1PB1 LINE L1 5918 6150 -1 35 83 0 0 chr1 221456425 221456509 -60737155 + AT_rich Low_complexity Low_complexity 1 84 0 224 280 90 50 chr1 221457323 221457423 -60736241 - MIR SINE MIR -5 257 154 23 33 0 0 chr1 221457646 221457676 -60735988 + AT_rich Low_complexity Low_complexity 1 30 0 438 284 149 19 chr1 221457835 221458043 -60735621 + L2 LINE L2 2916 3150 -163 467 212 0 16 chr1 221458091 221458184 -60735480 - MER2 DNA MER2_type -150 89 1 227 322 54 34 chr1 221458184 221458333 -60735331 + L2 LINE L2 3152 3303 -10 6082 161 65 9 chr1 221458394 221459555 -60734109 - Tigger3b DNA MER2_type -5 1226 1 778 348 79 32 chr1 221459558 221459968 -60733696 - L2 LINE L2 0 3313 2924 2628 70 3 14 chr1 221459968 221460326 -60733338 - L1PA6 LINE L1 -3 6151 5798 778 348 79 32 chr1 221460326 221460821 -60732843 - L2 LINE L2 -389 2924 2262 319 260 0 73 chr1 221460826 221460922 -60732742 + L2 LINE L2 3176 3264 -8 22 0 0 0 chr1 221462574 221462596 -60731068 + AT_rich Low_complexity Low_complexity 1 22 0 340 344 51 19 chr1 221462976 221463133 -60730531 - L3 LINE CR1 -502 1075 914 1586 161 114 0 chr1 221463237 221463561 -60730103 - MER46B DNA MER2_type 0 236 1 23 33 0 0 chr1 221464336 221464366 -60729298 + AT_rich Low_complexity Low_complexity 1 30 0 346 333 124 0 chr1 221464377 221464578 -60729086 - L3 LINE CR1 -977 600 375 1459 138 22 0 chr1 221464904 221465128 -60728536 - MER30 DNA MER1_type 0 230 2 262 181 14 14 chr1 221466284 221466356 -60727308 + CT-rich Low_complexity Low_complexity 2 73 0 16756 174 85 47 chr1 221466616 221469430 -60724234 + L1M1 LINE L1 495 3202 -4458 243 0 0 0 chr1 221469430 221469457 -60724207 + (CA)n Simple_repeat Simple_repeat 2 28 0 16756 174 85 47 chr1 221469457 221471789 -60721875 + L1M1 LINE L1 3202 6142 -1518 1326 145 8 39 chr1 221471789 221472023 -60721641 - THE1B LTR MaLR -137 227 1 16756 174 85 47 chr1 221472023 221472828 -60720836 + L1M1 LINE L1 6142 6915 -745 2334 186 28 3 chr1 221472827 221473316 -60720348 - L1P5 LINE L1 -414 5742 5241 * 2036 71 52 0 chr1 221474193 221474514 -60719150 + AluY SINE Alu 1 335 0 360 338 31 27 chr1 221474606 221474828 -60718836 + L1ME2 LINE L1 1389 1611 -4929 448 260 26 32 chr1 221474895 221475151 -60718513 + L1ME2 LINE L1 1847 2027 -4513 27 29 0 0 chr1 221475344 221475378 -60718286 + AT_rich Low_complexity Low_complexity 1 34 0 498 356 31 27 chr1 221475472 221475764 -60717900 + LTR16C LTR ERVL 199 491 0 2910 166 35 48 chr1 221475820 221477273 -60716391 - MER83B-int LTR ERV1 -2532 4464 2993 189 0 0 0 chr1 221477273 221477294 -60716370 + (GA)n Simple_repeat Simple_repeat 2 22 0 2910 166 35 48 chr1 221477294 221477399 -60716265 - MER83B-int LTR ERV1 -4003 2993 632 421 198 0 85 chr1 221477397 221477503 -60716161 - MER83B-int LTR ERV1 -885 3995 3899 * 21 0 0 0 chr1 221477503 221477524 -60716140 + AT_rich Low_complexity Low_complexity 1 21 0 4570 189 90 45 chr1 221477595 221478699 -60714965 - MER83B-int LTR ERV1 -5521 1570 418 2102 206 76 49 chr1 221478745 221479360 -60714304 - LTR27 LTR ERV1 -2 634 3 1780 270 114 47 chr1 221479360 221480910 -60712754 + L1ME2 LINE L1 4137 5794 -746 1150 239 33 9 chr1 221480906 221481241 -60712423 + L1ME2 LINE L1 6215 6557 -1 * 2144 137 0 0 chr1 221481435 221481742 -60711922 + AluSx SINE Alu 6 312 0 242 143 20 0 chr1 221481770 221481819 -60711845 + (TA)n Simple_repeat Simple_repeat 2 51 0 716 195 108 132 chr1 221482007 221482401 -60711263 - MLT1A1 LTR MaLR -4 376 5 24 85 0 0 chr1 221482592 221482651 -60711013 + AT_rich Low_complexity Low_complexity 1 59 0 231 189 0 0 chr1 221484981 221485034 -60708630 + (TA)n Simple_repeat Simple_repeat 1 53 0 1260 170 81 28 chr1 221485153 221485436 -60708228 - AluJb SINE Alu -14 298 1 22 0 0 0 chr1 221485517 221485539 -60708125 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 221485729 221485767 -60707897 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr1 221486651 221486691 -60706973 + AT_rich Low_complexity Low_complexity 1 40 0 182 305 12 24 chr1 221486947 221487029 -60706635 - MIR SINE MIR -10 252 172 1841 247 115 23 chr1 221487123 221487646 -60706018 - MLT1E LTR MaLR -1 592 22 2314 76 0 7 chr1 221488247 221488549 -60705115 - AluY SINE Alu -11 300 1 182 150 25 0 chr1 221489075 221489115 -60704549 + (CATA)n Simple_repeat Simple_repeat 2 42 0 191 114 29 0 chr1 221490003 221490038 -60703626 + (TA)n Simple_repeat Simple_repeat 1 36 0 289 286 132 19 chr1 221490265 221490683 -60702981 - L1MD2 LINE L1 -280 5882 5470 488 285 97 26 chr1 221490715 221491066 -60702598 - L1MD2 LINE L1 -748 5398 5023 228 67 0 0 chr1 221491070 221491100 -60702564 + (TA)n Simple_repeat Simple_repeat 2 31 0 246 175 18 0 chr1 221491855 221491912 -60701752 - HAL1b LINE L1 -31 1317 1260 1865 189 12 3 chr1 221491965 221492308 -60701356 + MER7A DNA MER2_type 2 345 -1 407 304 89 78 chr1 221492333 221492715 -60700949 - L1MC4a LINE L1 -1916 5892 5507 38 66 0 28 chr1 221493065 221493171 -60700493 + AT_rich Low_complexity Low_complexity 1 103 0 23 0 0 0 chr1 221493987 221494010 -60699654 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 221495283 221495311 -60698353 + AT_rich Low_complexity Low_complexity 1 28 0 230 306 35 0 chr1 221496003 221496088 -60697576 + LTR33A LTR ERVL 59 146 -377 947 294 54 40 chr1 221496117 221496798 -60696866 - L1MCa LINE L1 -4784 1642 952 1065 265 99 0 chr1 221497033 221497327 -60696337 - MER58B DNA MER1_type -18 323 1 1222 119 129 0 chr1 221497342 221497543 -60696121 + MER30 DNA MER1_type 4 230 0 2393 74 0 0 chr1 221497878 221498189 -60695475 - AluY SINE Alu 0 311 1 2436 200 147 89 chr1 221498839 221499877 -60693787 + L1MCa LINE L1 775 1873 -4553 827 231 32 40 chr1 221499879 221500130 -60693534 + L1ME1 LINE L1 5913 6161 -5 25 0 0 0 chr1 221500402 221500427 -60693237 + AT_rich Low_complexity Low_complexity 1 25 0 217 272 75 89 chr1 221500897 221501032 -60692632 - MIR SINE MIR -63 145 43 376 61 37 134 chr1 221502161 221502243 -60691421 - L1MA9 LINE L1 -4 6308 6235 3526 137 37 1 chr1 221502250 221502840 -60690824 - LTR38B LTR ERV1 0 611 1 1182 149 45 14 chr1 221502840 221502899 -60690765 - L1MA9 LINE L1 -81 6231 6175 186 43 0 0 chr1 221502899 221502922 -60690742 + (TG)n Simple_repeat Simple_repeat 1 23 0 1182 149 45 14 chr1 221502922 221503083 -60690581 - L1MA9 LINE L1 -137 6175 6004 29 0 0 0 chr1 221503147 221503176 -60690488 + AT_rich Low_complexity Low_complexity 1 29 0 1659 251 14 0 chr1 221503549 221503899 -60689765 - MLT1A1 LTR MaLR -4 361 7 4616 166 32 40 chr1 221503899 221504829 -60688835 - MER49 LTR ERV1 0 923 1 319 311 83 59 chr1 221504881 221505341 -60688323 + L2 LINE L2 1824 2294 -1020 21 36 0 0 chr1 221506038 221506066 -60687598 + AT_rich Low_complexity Low_complexity 1 28 0 188 371 53 23 chr1 221506139 221506271 -60687393 + L2 LINE L2 3137 3272 0 185 334 128 36 chr1 221507090 221507181 -60686483 + L2 LINE L2 2921 3002 -311 1944 138 3 10 chr1 221507181 221507478 -60686186 - AluSx SINE Alu -17 295 1 185 334 128 36 chr1 221507478 221507691 -60685973 + L2 LINE L2 3002 3253 -60 650 237 0 18 chr1 221508303 221508472 -60685192 + LTR28 LTR ERV1 1 166 -854 1468 188 43 7 chr1 221508552 221508828 -60684836 + MER61D LTR ERV1 216 501 0 1717 126 0 8 chr1 221509131 221509377 -60684287 - AluSc SINE Alu -65 244 1 805 207 0 58 chr1 221510034 221510208 -60683456 + AluJo SINE Alu 17 180 -132 225 289 83 58 chr1 221510307 221510342 -60683322 + MIR SINE MIR 114 147 -115 2150 91 0 10 chr1 221510342 221510638 -60683026 + AluY SINE Alu 1 293 -18 225 289 83 58 chr1 221510638 221510723 -60682941 + MIR SINE MIR 147 237 -25 240 279 0 15 chr1 221511317 221511385 -60682279 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2390 175 33 45 chr1 221511831 221512346 -60681318 + LTR54 LTR ERV1 2 510 0 1005 38 38 13 chr1 221514196 221514355 -60679309 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 1733 160 55 28 chr1 221514606 221514968 -60678696 - THE1C LTR MaLR -3 372 1 5348 167 14 15 chr1 221514968 221515927 -60677737 - THE1C-int LTR MaLR 0 1580 623 1828 180 24 19 chr1 221515930 221516303 -60677361 - THE1C LTR MaLR 0 375 1 6689 181 154 8 chr1 221516303 221517742 -60675922 - THE1C-int LTR MaLR 0 1651 3 2037 175 16 5 chr1 221517746 221518117 -60675547 - THE1C LTR MaLR 0 375 1 3495 139 3 67 chr1 221518117 221518772 -60674892 - THE1C-int LTR MaLR -956 624 12 2689 116 5 2 chr1 221518772 221519385 -60674279 - PABL_A LTR ERV1 0 660 1 884 180 16 48 chr1 221519400 221519589 -60674075 - THE1C LTR MaLR 0 364 182 393 170 3 13 chr1 221519699 221519774 -60673890 - THE1C LTR MaLR -208 167 101 231 173 25 86 chr1 221521949 221521992 -60671672 - MER58 DNA MER1_type -237 104 67 1533 221 57 33 chr1 221521992 221522448 -60671216 + MLT1C LTR MaLR 1 467 0 231 173 25 86 chr1 221522448 221522485 -60671179 - MER58 DNA MER1_type -274 67 29 31 76 0 0 chr1 221523150 221523216 -60670448 + AT_rich Low_complexity Low_complexity 1 66 0 4056 180 27 36 chr1 221523454 221524332 -60669332 - L1MB1 LINE L1 -1 6167 5298 352 324 12 0 chr1 221524536 221524709 -60668955 - MER114 LTR ERV -22 626 452 358 241 0 13 chr1 221524790 221524869 -60668795 + Tigger5 DNA MER2_type 2 79 -2244 320 237 0 13 chr1 221524873 221524949 -60668715 - Tigger5 DNA MER2_type -8 2315 2241 227 204 37 0 chr1 221525853 221525907 -60667757 - MER58 DNA MER1_type -2320 100 45 558 300 39 0 chr1 221527347 221527527 -60666137 + MER5A DNA MER1_type 2 188 -1 1771 145 0 94 chr1 221527547 221527919 -60665745 + MER1B DNA MER1_type 1 337 0 2241 72 45 0 chr1 221529019 221529309 -60664355 + AluY SINE Alu 1 303 -8 29 28 0 0 chr1 221529431 221529467 -60664197 + AT_rich Low_complexity Low_complexity 1 36 0 202 323 129 0 chr1 221529591 221529715 -60663949 + MIR SINE MIR 45 184 -78 377 256 73 18 chr1 221529898 221530062 -60663602 - MER46C DNA MER2_type 0 338 166 3860 326 72 29 chr1 221530071 221532233 -60661431 - L2 LINE L2 -321 2992 740 2041 84 0 7 chr1 221532233 221532520 -60661144 - L1PA6 LINE L1 0 6154 5870 390 244 54 54 chr1 221532545 221532713 -60660951 - MER97c DNA MER1_type? -3 1087 920 1276 247 75 21 chr1 221532750 221533138 -60660526 - MER97b DNA MER1_type? -635 418 10 479 356 92 18 chr1 221533142 221533468 -60660196 - L2 LINE L2 -2591 723 374 14801 189 29 17 chr1 221534044 221534533 -60659131 + L1M1 LINE L1 22 504 -7061 1970 151 0 7 chr1 221534533 221534831 -60658833 + AluSx SINE Alu 1 296 -16 14801 189 29 17 chr1 221534831 221537242 -60656422 + L1M1 LINE L1 504 2956 -4609 3771 50 15 0 chr1 221537236 221537762 -60655902 - L1PA5 LINE L1 -430 5724 5193 * 3449 43 0 0 chr1 221537762 221538180 -60655484 + L1PA5 LINE L1 5731 6149 -5 10578 196 40 9 chr1 221538185 221540271 -60653393 + L1M1 LINE L1 2935 4955 -2610 272 49 49 0 chr1 221540271 221540312 -60653352 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 10578 196 40 9 chr1 221540312 221541081 -60652583 + L1M1 LINE L1 4955 5896 -1669 2115 138 0 0 chr1 221541081 221541385 -60652279 + AluSg SINE Alu 3 306 -4 10578 196 40 9 chr1 221541385 221541641 -60652023 + L1M1 LINE L1 5896 6143 -1422 1014 409 178 0 chr1 221541641 221541927 -60651737 - LTR12 LTR ERV1 -1 713 377 433 231 26 0 chr1 221541927 221542044 -60651620 - LTR30 LTR ERV1 -79 643 524 1605 56 121 0 chr1 221542044 221542259 -60651405 - LTR12 LTR ERV1 -456 258 18 6895 139 8 11 chr1 221542269 221543821 -60649843 + L1MA1 LINE L1 6169 7717 -4 353 351 27 21 chr1 221543847 221544035 -60649629 - MIR SINE MIR -18 244 56 4720 134 16 5 chr1 221544039 221544515 -60649149 - L1PA16 LINE L1 -5 6161 5692 204 40 0 0 chr1 221544515 221544540 -60649124 + (TA)n Simple_repeat Simple_repeat 1 25 0 4720 134 16 5 chr1 221544540 221545507 -60648157 - L1PA16 LINE L1 -474 5692 4657 2800 195 83 61 chr1 221545510 221545922 -60647742 + L1 LINE L1 3833 4234 -1912 271 91 23 0 chr1 221545922 221545966 -60647698 + AluSq SINE Alu 1 45 -257 6650 70 14 0 chr1 221545972 221547011 -60646653 + L1PA7 LINE L1 5114 6164 0 2800 195 83 61 chr1 221547011 221547356 -60646308 + L1 LINE L1 4238 4659 -1487 31 0 0 0 chr1 221547850 221547881 -60645783 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr1 221547970 221548005 -60645659 + AT_rich Low_complexity Low_complexity 1 35 0 1583 165 105 15 chr1 221548269 221548603 -60645061 - MER47A DNA MER2_type -2 364 1 1469 200 3 33 chr1 221548753 221549058 -60644606 + AluJo SINE Alu 2 297 -15 2761 233 56 17 chr1 221549286 221550298 -60643366 - MER69 DNA AcHobo -2 2524 1468 275 289 48 12 chr1 221550442 221550525 -60643139 + MER69 DNA AcHobo 312 397 -2129 1667 150 21 25 chr1 221550579 221550865 -60642799 + AluSq SINE Alu 29 313 0 627 269 159 0 chr1 221550879 221551061 -60642603 - MER69 DNA AcHobo -995 231 21 1251 311 108 24 chr1 221551083 221551803 -60641861 - L2 LINE L2 -440 2874 2094 3212 241 103 20 chr1 221551872 221552097 -60641567 + MER45B DNA AcHobo 1 206 -1375 1916 132 14 0 chr1 221552097 221552385 -60641279 - AluSx SINE Alu -20 292 1 3212 241 103 20 chr1 221552385 221552946 -60640718 + MER45B DNA AcHobo 206 877 -704 189 0 0 0 chr1 221552946 221552967 -60640697 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 3212 241 103 20 chr1 221552967 221553098 -60640566 + MER45B DNA AcHobo 877 996 -44 2601 70 3 17 chr1 221553098 221553486 -60640178 - L1PA6 LINE L1 0 6154 5798 772 318 114 21 chr1 221553550 221553981 -60639683 - L2 LINE L2 -582 2732 2262 318 260 0 73 chr1 221553986 221554082 -60639582 + L2 LINE L2 3176 3264 -8 22 0 0 0 chr1 221555734 221555756 -60637908 + AT_rich Low_complexity Low_complexity 1 22 0 339 344 51 19 chr1 221556136 221556293 -60637371 - L3 LINE CR1 -502 1075 914 1575 161 114 0 chr1 221556397 221556721 -60636943 - MER46B DNA MER2_type 0 236 1 23 33 0 0 chr1 221557497 221557527 -60636137 + AT_rich Low_complexity Low_complexity 1 30 0 345 333 124 0 chr1 221557538 221557739 -60635925 - L3 LINE CR1 -977 600 375 1462 138 22 0 chr1 221558065 221558289 -60635375 - MER30 DNA MER1_type 0 230 2 262 181 14 14 chr1 221559445 221559517 -60634147 + CT-rich Low_complexity Low_complexity 2 73 0 16774 174 85 47 chr1 221559779 221562591 -60631073 + L1M1 LINE L1 497 3202 -4458 243 0 0 0 chr1 221562591 221562618 -60631046 + (CA)n Simple_repeat Simple_repeat 2 28 0 16774 174 85 47 chr1 221562618 221564950 -60628714 + L1M1 LINE L1 3202 6142 -1518 1336 145 8 39 chr1 221564950 221565184 -60628480 - THE1B LTR MaLR -137 227 1 16774 174 85 47 chr1 221565184 221565989 -60627675 + L1M1 LINE L1 6142 6915 -745 1522 181 27 0 chr1 221565988 221566281 -60627383 - L1P5 LINE L1 -414 5742 5442 * 1873 226 161 62 chr1 221566382 221567101 -60626563 + L1MCa LINE L1 1174 1820 -4606 2093 97 13 0 chr1 221567101 221567401 -60626263 - AluY SINE Alu -7 304 1 1873 226 161 62 chr1 221567401 221568099 -60625565 + L1MCa LINE L1 1820 2730 -3696 * 2448 245 65 41 chr1 221568087 221569206 -60624458 + L1MCa LINE L1 3196 4341 -2085 754 232 51 8 chr1 221569205 221569442 -60624222 + L1MC3 LINE L1 7520 7766 -19 * 250 205 12 60 chr1 221570226 221570309 -60623355 - LTR66 LTR ERVL -171 439 361 273 296 19 28 chr1 221570567 221570675 -60622989 - LTR67 LTR ERVL 0 557 451 431 171 0 14 chr1 221570727 221570797 -60622867 + Tigger2 DNA MER2_type 1 69 -2649 * 2601 149 13 20 chr1 221570787 221571236 -60622428 + Tigger2 DNA MER2_type 2273 2718 0 328 373 40 0 chr1 221571341 221571542 -60622122 - LTR67 LTR ERVL -311 246 38 207 311 82 37 chr1 221572961 221573096 -60620568 + L2 LINE L2 3173 3313 0 214 333 43 121 chr1 221574323 221574605 -60619059 - L2 LINE L2 -9 3263 3004 427 269 35 102 chr1 221574744 221575000 -60618664 - MIR SINE MIR -21 241 3 285 373 86 25 chr1 221575099 221575426 -60618238 - L2 LINE L2 -534 2780 2434 289 335 114 11 chr1 221575582 221575758 -60617906 - L2 LINE L2 0 3313 3120 546 326 71 17 chr1 221575871 221576110 -60617554 + MIR SINE MIR 3 254 -8 2382 38 3 0 chr1 221577172 221577460 -60616204 - L1PA5 LINE L1 -8 6146 5858 203 269 0 0 chr1 221577631 221577683 -60615981 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 22 56 0 0 chr1 221577871 221577907 -60615757 + AT_rich Low_complexity Low_complexity 1 36 0 236 227 27 64 chr1 221577980 221578090 -60615574 - L1ME LINE L1 -302 5868 5763 36 40 0 0 chr1 221578809 221578859 -60614805 + AT_rich Low_complexity Low_complexity 1 50 0 196 338 128 68 chr1 221579002 221579738 -60613926 + L2 LINE L2 1686 2465 -849 211 333 0 39 chr1 221579935 221580013 -60613651 + L2 LINE L2 3194 3268 -4 756 253 67 18 chr1 221580548 221580773 -60612891 + MIR SINE MIR 1 236 -26 23 0 0 0 chr1 221581625 221581648 -60612016 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr1 221582063 221582095 -60611569 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 221582900 221582921 -60610743 + AT_rich Low_complexity Low_complexity 1 21 0 262 354 42 42 chr1 221583733 221583877 -60609787 + MER5B DNA MER1_type 26 169 -9 189 74 0 0 chr1 221584213 221584240 -60609424 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 409 226 65 129 chr1 221585064 221585250 -60608414 + MIR SINE MIR 8 181 -81 2067 110 3 23 chr1 221585255 221585563 -60608101 - AluSg SINE Alu -8 302 1 183 296 141 0 chr1 221585675 221585746 -60607918 + L2 LINE L2 3154 3234 -38 23 54 0 0 chr1 221586969 221587006 -60606658 + AT_rich Low_complexity Low_complexity 1 37 0 205 340 30 40 chr1 221587189 221587289 -60606375 + MIR SINE MIR 2 100 -162 23 33 0 0 chr1 221587447 221587477 -60606187 + AT_rich Low_complexity Low_complexity 1 30 0 484 343 153 30 chr1 221587490 221588178 -60605486 + L3 LINE CR1 598 1369 -208 2010 139 16 43 chr1 221589381 221589755 -60603909 - THE1B LTR MaLR 0 364 1 9680 124 52 15 chr1 221589759 221591278 -60602386 - THE1C-int LTR MaLR -5 1575 1 2482 128 5 3 chr1 221591278 221591652 -60602012 - THE1C LTR MaLR 0 375 1 275 308 11 0 chr1 221591652 221591743 -60601921 + L1ME3 LINE L1 5899 5990 -172 1340 199 57 23 chr1 221591865 221592166 -60601498 + MER68 LTR ERV1 1 311 -251 267 196 120 109 chr1 221592162 221592254 -60601410 + MER68 LTR ERV1 457 549 -13 * 1653 270 10 35 chr1 221592767 221593289 -60600375 + L1MC4a LINE L1 6484 6992 -816 853 278 42 17 chr1 221593301 221593589 -60600075 + L1MC4 LINE L1 7238 7532 -510 3306 168 21 18 chr1 221593654 221594280 -60599384 + MER67C LTR ERV1 74 701 -9 606 295 78 0 chr1 221594304 221594548 -60599116 + L1MC4 LINE L1 7532 7794 -248 239 273 181 26 chr1 221594783 221595075 -60598589 - L1ME2 LINE L1 -156 6014 5704 6101 184 79 28 chr1 221595184 221597765 -60595899 - L1MA4A LINE L1 0 7005 4283 1780 196 35 6 chr1 221597868 221598445 -60595219 - L1MA4A LINE L1 -3553 3295 2700 * 9370 226 61 11 chr1 221598424 221600543 -60593121 - L1MA4A LINE L1 -4594 2255 32 24 0 0 0 chr1 221600947 221600971 -60592693 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 221600984 221601006 -60592658 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 221601127 221601151 -60592513 + AT_rich Low_complexity Low_complexity 1 24 0 624 293 127 38 chr1 221601173 221601542 -60592122 - L2 LINE L2 0 3313 2912 522 283 217 43 chr1 221601659 221601981 -60591683 - L2 LINE L2 -526 2788 2411 2170 219 57 49 chr1 221603532 221603695 -60589969 - Charlie1 DNA MER1_type -9 2752 2592 2287 69 0 0 chr1 221603695 221603984 -60589680 + AluY SINE Alu 1 289 -22 2170 219 57 49 chr1 221603984 221604579 -60589085 - Charlie1 DNA MER1_type -169 2592 1988 283 158 0 18 chr1 221604703 221604760 -60588904 + MER41A LTR ERV1 157 212 -342 1635 232 109 30 chr1 221604761 221605256 -60588408 + L1MA1 LINE L1 13 546 -7019 9632 197 21 9 chr1 221605287 221607385 -60586279 + L1MA1 LINE L1 3979 6102 -1463 6841 125 29 9 chr1 221607391 221608699 -60584965 + L1MA1 LINE L1 6367 7721 0 1485 202 21 76 chr1 221608709 221609135 -60584529 + MER41B LTR ERV1 100 468 -10 1085 227 54 3 chr1 221609284 221609579 -60584085 + L1MA4 LINE L1 5991 6300 0 199 254 119 0 chr1 221609642 221609701 -60583963 + MIR SINE MIR 129 194 -68 218 296 99 0 chr1 221612297 221612368 -60581296 + MIR SINE MIR 74 151 -111 197 0 71 0 chr1 221612803 221612831 -60580833 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 617 248 61 0 chr1 221613037 221613235 -60580429 + L1MDb LINE L1 860 1069 -5340 254 196 9 93 chr1 221613240 221613347 -60580317 + L1MDb LINE L1 1151 1248 -5161 1040 132 6 6 chr1 221613347 221613514 -60580150 + AluSq SINE Alu 132 298 -15 500 209 69 32 chr1 221613514 221613736 -60579928 + L1MDb LINE L1 1239 1457 -4949 471 169 32 0 chr1 221613733 221613853 -60579811 + L1MD2 LINE L1 6221 7985 -10 * 24 53 0 0 chr1 221614294 221614332 -60579332 + AT_rich Low_complexity Low_complexity 1 38 0 559 209 9 0 chr1 221615247 221615362 -60578302 - MER3 DNA MER1_type -5 204 89 476 202 42 42 chr1 221615369 221615488 -60578176 + AluJb SINE Alu 177 295 -17 362 287 173 45 chr1 221615546 221615967 -60577697 + L1MDb LINE L1 2408 2882 -3524 313 258 93 86 chr1 221616641 221616909 -60576755 + L1M4 LINE L1 4177 4446 -1700 1902 97 0 0 chr1 221616941 221617198 -60576466 + AluSq SINE Alu 3 259 -54 505 159 9 9 chr1 221617213 221617320 -60576344 + GA-rich Low_complexity Low_complexity 1 107 0 368 291 74 32 chr1 221617322 221617511 -60576153 + L1M4 LINE L1 4733 4929 -1217 21 0 0 0 chr1 221667902 221667923 -60525741 + AT_rich Low_complexity Low_complexity 1 21 0 478 235 15 8 chr1 221668443 221668575 -60525089 + L1MC3 LINE L1 7576 7708 -77 4270 155 30 46 chr1 221668616 221669615 -60524049 + MER11C LTR ERVK 1 1071 0 209 246 18 0 chr1 221670042 221670099 -60523565 + (TA)n Simple_repeat Simple_repeat 2 59 0 2065 125 0 3 chr1 221671368 221671657 -60522007 - AluSg SINE Alu -19 291 4 24 53 0 0 chr1 221672205 221672243 -60521421 + AT_rich Low_complexity Low_complexity 1 38 0 460 342 42 16 chr1 221672756 221672949 -60520715 + MIR SINE MIR 47 244 -18 1408 249 109 5 chr1 221674213 221674599 -60519065 + MSTB LTR MaLR 1 426 0 1323 233 196 32 chr1 221675852 221676119 -60517545 - MLT1E2 LTR MaLR 0 626 404 2038 175 38 24 chr1 221676119 221676570 -60517094 + MSTB2 LTR MaLR 1 457 0 1323 233 196 32 chr1 221676570 221676838 -60516826 - MLT1E2 LTR MaLR -222 404 3 321 118 0 0 chr1 221676864 221676915 -60516749 + (TA)n Simple_repeat Simple_repeat 2 52 0 326 277 84 25 chr1 221676917 221677036 -60516628 + MIR SINE MIR 88 213 -49 2253 246 89 70 chr1 221677326 221679007 -60514657 - L1ME LINE L1 -2399 3816 2146 449 268 146 14 chr1 221679014 221679268 -60514396 - L1ME LINE L1 -5095 1110 825 1946 276 21 2 chr1 221679793 221680260 -60513404 - MER70B LTR ERVL -102 476 1 277 343 21 14 chr1 221680321 221680464 -60513200 - L1ME LINE L1 -6077 319 176 264 354 10 0 chr1 221680648 221680747 -60512917 + L2 LINE L2 3214 3313 0 39 74 0 0 chr1 221681378 221681459 -60512205 + AT_rich Low_complexity Low_complexity 1 81 0 223 411 30 46 chr1 221681472 221681669 -60511995 - L2 LINE L2 -52 3220 3027 276 363 154 35 chr1 221681864 221682797 -60510867 - L2 LINE L2 -553 2761 1718 202 209 23 0 chr1 221682989 221683032 -60510632 + GA-rich Low_complexity Low_complexity 2 45 0 2708 202 30 24 chr1 221683417 221684045 -60509619 + L1MD1 LINE L1 5606 6237 -5 189 271 17 51 chr1 221684117 221684176 -60509488 + MIR SINE MIR 32 88 -174 200 189 0 0 chr1 221684207 221684244 -60509420 + (CACCAT)n Simple_repeat Simple_repeat 5 41 0 787 298 19 0 chr1 221684245 221684453 -60509211 - MIR SINE MIR -10 252 41 653 263 57 14 chr1 221684469 221684678 -60508986 - MER115 DNA AcHobo -4 689 472 430 345 56 44 chr1 221684743 221684995 -60508669 - MER115 DNA AcHobo -350 343 89 31 44 0 0 chr1 221685502 221685547 -60508117 + AT_rich Low_complexity Low_complexity 1 45 0 5256 157 29 4 chr1 221685565 221686508 -60507156 - L1MA6 LINE L1 0 6300 5335 269 349 23 8 chr1 221686909 221687041 -60506623 + L3 LINE CR1 836 969 -608 216 337 74 17 chr1 221687361 221687536 -60506128 + MIR3 SINE MIR 24 208 0 650 191 29 7 chr1 221687635 221687786 -60505878 + L1MB5 LINE L1 5684 5837 -337 2228 171 23 7 chr1 221687786 221688189 -60505475 - MSTA LTR MaLR -21 399 2 189 191 15 103 chr1 221690288 221690356 -60503308 - L2 LINE L2 -97 3216 3155 350 323 90 0 chr1 221691041 221691196 -60502468 + MIR SINE MIR 53 221 -41 25 31 0 0 chr1 221691255 221691287 -60502377 + AT_rich Low_complexity Low_complexity 1 32 0 223 293 40 0 chr1 221691817 221691892 -60501772 - L2 LINE L2 -10 3303 3226 192 410 0 0 chr1 221692938 221693016 -60500648 - L2 LINE L2 -9 3263 3186 24 53 0 0 chr1 221695625 221695663 -60498001 + AT_rich Low_complexity Low_complexity 1 38 0 31 76 0 0 chr1 221697739 221697805 -60495859 + AT_rich Low_complexity Low_complexity 1 66 0 632 296 35 5 chr1 221699525 221699724 -60493940 + MIR SINE MIR 58 262 0 321 26 0 0 chr1 221699870 221699908 -60493756 + (TG)n Simple_repeat Simple_repeat 2 39 0 415 250 24 65 chr1 221699914 221700082 -60493582 + MLT1E1 LTR MaLR 1 161 -493 505 174 0 32 chr1 221700095 221700232 -60493432 + MLT1E1 LTR MaLR 485 654 0 273 351 110 7 chr1 221700380 221700534 -60493130 - L3 LINE CR1 -469 1108 939 23 68 0 0 chr1 221701522 221701566 -60492098 + AT_rich Low_complexity Low_complexity 1 44 0 2815 176 28 22 chr1 221702064 221702644 -60491020 + L1MB8 LINE L1 5591 6173 -5 322 340 62 48 chr1 221702721 221703012 -60490652 - MLT1J LTR MaLR -105 406 112 339 65 0 0 chr1 221703174 221703220 -60490444 + (TTG)n Simple_repeat Simple_repeat 2 47 0 214 357 65 55 chr1 221704103 221704302 -60489362 + MIR SINE MIR 1 201 -61 2295 153 5 0 chr1 221704486 221704859 -60488805 - THE1C LTR MaLR 0 375 1 9197 121 52 42 chr1 221704859 221706423 -60487241 - THE1C-int LTR MaLR 0 1580 1 2278 132 2 48 chr1 221706423 221706645 -60487019 - THE1C LTR MaLR 0 375 177 1764 169 6 13 chr1 221706645 221706959 -60486705 + AluSx SINE Alu 1 312 0 2278 132 2 48 chr1 221706959 221707129 -60486535 - THE1C LTR MaLR -198 177 1 1525 156 212 20 chr1 221707418 221707776 -60485888 - THE1C LTR MaLR -1 427 1 1930 77 0 11 chr1 221710169 221710429 -60483235 - AluY SINE Alu -18 293 37 763 238 0 12 chr1 221710821 221710985 -60482679 - MLT1A2 LTR MaLR -212 162 1 1744 97 93 0 chr1 221711082 221711414 -60482250 - AluY SINE Alu 0 356 1 444 239 37 22 chr1 221713003 221713137 -60480527 + L1MC2 LINE L1 21 156 -6270 * 3054 214 13 12 chr1 221713128 221713651 -60480013 - L1 LINE L1 -1932 4214 3693 1861 107 8 4 chr1 221713651 221713949 -60479715 - AluSp SINE Alu 0 319 21 185 0 0 39 chr1 221713952 221713978 -60479686 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 3054 214 13 12 chr1 221713978 221714122 -60479542 - L1 LINE L1 -2454 3692 3541 4617 163 34 39 chr1 221714122 221716065 -60477599 + L1PB2 LINE L1 4220 6148 -3 347 235 10 20 chr1 221716061 221716159 -60477505 + L1MC2 LINE L1 131 227 -6199 * 2156 140 101 0 chr1 221716185 221716570 -60477094 + L1P4 LINE L1 5289 5712 -453 * 5295 257 56 10 chr1 221716569 221717696 -60475968 + L1MC2 LINE L1 3441 4704 -1722 2378 58 0 3 chr1 221717696 221718030 -60475634 + AluY SINE Alu 1 294 -17 5295 257 56 10 chr1 221718030 221718947 -60474717 + L1MC2 LINE L1 4704 5577 -849 576 128 0 0 chr1 221718947 221719041 -60474623 + AluY SINE Alu 1 94 -217 2362 65 3 0 chr1 221719150 221719443 -60474221 + AluY SINE Alu 1 294 -17 1659 168 22 3 chr1 221719468 221719789 -60473875 + L1MC2 LINE L1 5563 5889 -2176 5078 187 27 28 chr1 221719801 221720778 -60472886 - L1MA9 LINE L1 -7 6305 5329 986 231 12 119 chr1 221720778 221721181 -60472483 - MLT1A1 LTR MaLR -3 362 3 5078 187 27 28 chr1 221721181 221722219 -60471445 - L1MA9 LINE L1 -983 5329 4281 3927 260 79 13 chr1 221722214 221723227 -60470437 + L1M4 LINE L1 2612 3741 -2405 * 234 81 0 0 chr1 221723227 221723264 -60470400 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3927 260 79 13 chr1 221723264 221723629 -60470035 + L1M4 LINE L1 3741 4081 -2065 316 184 40 0 chr1 221723635 221723711 -60469953 + L1MC2 LINE L1 6537 6615 -9 14232 159 56 12 chr1 221724149 221724378 -60469286 + Tigger2 DNA MER2_type 1 219 -2499 2080 123 0 26 chr1 221724378 221724680 -60468984 + AluSq SINE Alu 1 294 -19 14232 159 56 12 chr1 221724680 221727018 -60466646 + Tigger2 DNA MER2_type 219 2680 -38 270 264 23 0 chr1 221727020 221727107 -60466557 - L1MC4 LINE L1 -1339 6703 6615 196 231 0 44 chr1 221727114 221727205 -60466459 + (TA)n Simple_repeat Simple_repeat 2 88 0 343 237 0 43 chr1 221727208 221727301 -60466363 + L1MC4 LINE L1 6615 6703 -1339 335 303 0 0 chr1 221727314 221727403 -60466261 + L1MC4 LINE L1 6615 6703 -1339 396 209 0 0 chr1 221727404 221727495 -60466169 + (TA)n Simple_repeat Simple_repeat 2 92 0 314 151 55 41 chr1 221727606 221727679 -60465985 + L1MCa LINE L1 1995 2068 -4358 * 324 322 0 0 chr1 221727660 221727750 -60465914 - L1MC4 LINE L1 -1339 6703 6614 * 334 261 0 22 chr1 221727688 221727780 -60465884 + L1MC4 LINE L1 6614 6703 -1339 360 253 23 0 chr1 221727781 221727868 -60465796 + L1MC4 LINE L1 6615 6703 -1339 307 314 0 0 chr1 221727869 221727955 -60465709 + L1MC4 LINE L1 6617 6702 -1340 207 0 0 0 chr1 221728002 221728025 -60465639 + (CA)n Simple_repeat Simple_repeat 2 24 0 304 291 58 58 chr1 221728504 221728693 -60464971 + MIR SINE MIR 20 208 -54 203 158 0 0 chr1 221728838 221728876 -60464788 + A-rich Low_complexity Low_complexity 3 40 0 677 296 88 26 chr1 221729378 221729686 -60463978 + ERVL LTR ERVL 2245 2571 -3193 1054 226 48 0 chr1 221729697 221729905 -60463759 - MER58A DNA MER1_type -6 218 1 1189 347 58 36 chr1 221730144 221731092 -60462572 + ERVL LTR ERVL 3314 4282 -1482 282 341 0 29 chr1 221731675 221731813 -60461851 + ERVL LTR ERVL 4875 5008 -646 498 288 68 31 chr1 221732396 221732587 -60461077 + LTR16C LTR ERVL 197 394 -97 2520 58 0 3 chr1 221732605 221732916 -60460748 - AluY SINE Alu -1 310 1 216 208 38 0 chr1 221734683 221734736 -60458928 - MIR3 SINE MIR -30 178 124 203 237 0 0 chr1 221735945 221735983 -60457681 + (CATG)n Simple_repeat Simple_repeat 2 39 0 23 54 0 0 chr1 221736088 221736125 -60457539 + AT_rich Low_complexity Low_complexity 1 37 0 2407 91 0 0 chr1 221736199 221736507 -60457157 - AluSc SINE Alu -1 308 1 1650 169 13 27 chr1 221736644 221736945 -60456719 - AluJo SINE Alu -15 297 1 762 316 78 14 chr1 221739276 221739633 -60454031 + MLT1I LTR MaLR 4 383 -26 380 311 8 8 chr1 221741851 221741973 -60451691 - L2 LINE L2 -1 3312 3191 725 152 48 0 chr1 221741990 221742115 -60451549 + AluJo SINE Alu 5 135 -177 552 348 47 35 chr1 221742643 221743129 -60450535 + ERVL LTR ERVL 4831 5322 -442 998 312 49 18 chr1 221743322 221743707 -60449957 + LTR16A LTR ERVL 54 450 0 21 0 0 0 chr1 221743989 221744010 -60449654 + AT_rich Low_complexity Low_complexity 1 21 0 809 311 9 0 chr1 221746319 221746544 -60447120 + MLT2E LTR ERVL 94 320 -308 234 314 20 10 chr1 221746589 221746691 -60446973 + MLT2E LTR ERVL 458 560 -68 1829 251 54 57 chr1 221746700 221746980 -60446684 + MLT1G1 LTR MaLR 1 280 -315 2621 176 26 4 chr1 221746980 221747440 -60446224 - MER70A LTR ERVL -2 470 1 1829 251 54 57 chr1 221747440 221747752 -60445912 + MLT1G1 LTR MaLR 280 591 -4 64 57 0 0 chr1 221748169 221748275 -60445389 + AT_rich Low_complexity Low_complexity 1 106 0 262 253 24 106 chr1 221748579 221748749 -60444915 + MLT1G1-int LTR MaLR 1033 1188 -183 1217 300 85 34 chr1 221748964 221749516 -60444148 + MLT1G1 LTR MaLR 10 565 -2 8336 126 6 1 chr1 221749616 221750930 -60442734 - L1P3 LINE L1 -1999 4462 3142 6312 128 16 4 chr1 221752662 221753666 -60439998 - L1P3 LINE L1 -3298 3163 2148 3968 54 0 0 chr1 221753666 221754162 -60439502 + L1PA5 LINE L1 5652 6147 -7 7692 176 17 30 chr1 221755153 221757309 -60436355 - L1P3 LINE L1 -4304 2157 2 2919 245 54 29 chr1 221757311 221758562 -60435102 - L1M4c LINE L1 -3106 3851 2610 1450 182 9 63 chr1 221758675 221758993 -60434671 - AluJb SINE Alu -1 301 1 2872 71 3 5 chr1 221758999 221759381 -60434283 - L1PA7 LINE L1 -3 6151 5771 22 0 0 0 chr1 221759476 221759498 -60434166 + AT_rich Low_complexity Low_complexity 1 22 0 5030 260 99 10 chr1 221759637 221761771 -60431893 - L1M4c LINE L1 -4624 2514 37 691 219 41 0 chr1 221761774 221761920 -60431744 + MSTB LTR MaLR 206 357 -69 192 77 0 0 chr1 221761940 221761966 -60431698 + (TA)n Simple_repeat Simple_repeat 2 27 0 231 286 0 22 chr1 221762004 221762095 -60431569 - L1MC4 LINE L1 -1339 6703 6615 * 264 245 0 43 chr1 221762078 221762172 -60431492 + L1MC4 LINE L1 6614 6703 -1339 247 360 29 29 chr1 221762582 221762721 -60430943 - L3b LINE CR1 -150 1433 1295 288 303 131 0 chr1 221764408 221764507 -60429157 - L2 LINE L2 -1 3271 3160 1919 152 136 5 chr1 221764831 221765206 -60428458 - MSTA LTR MaLR -4 424 1 661 292 41 12 chr1 221765746 221765989 -60427675 + L1ME3A LINE L1 5625 5874 -296 508 301 123 40 chr1 221766154 221766529 -60427135 + MLT1I LTR MaLR 1 406 -3 368 354 119 6 chr1 221766538 221766866 -60426798 + L1MC/D LINE L1 4775 5139 -1007 225 272 211 17 chr1 221766958 221767138 -60426526 + L1MC/D LINE L1 5369 5583 -2459 26 0 0 0 chr1 221767862 221767888 -60425776 + AT_rich Low_complexity Low_complexity 1 26 0 279 0 0 0 chr1 221769466 221769497 -60424167 + (TG)n Simple_repeat Simple_repeat 2 32 0 26 0 0 0 chr1 221770547 221770573 -60423091 + AT_rich Low_complexity Low_complexity 1 26 0 577 300 72 0 chr1 221770584 221770764 -60422900 + MIR SINE MIR 8 200 -62 23 33 0 0 chr1 221770837 221770867 -60422797 + AT_rich Low_complexity Low_complexity 1 30 0 447 52 0 0 chr1 221770977 221771035 -60422629 + (TA)n Simple_repeat Simple_repeat 2 59 0 225 0 0 0 chr1 221771344 221771369 -60422295 + (T)n Simple_repeat Simple_repeat 1 25 0 236 345 42 17 chr1 221772271 221772390 -60421274 + L2 LINE L2 3151 3272 0 2194 127 0 7 chr1 221772484 221772791 -60420873 - AluSq SINE Alu -8 305 1 1340 196 94 4 chr1 221772963 221773229 -60420435 - AluJb SINE Alu -20 292 3 199 273 0 0 chr1 221774525 221774569 -60419095 - L2 LINE L2 -829 2485 2442 194 136 0 45 chr1 221774876 221774920 -60418744 - MIR SINE MIR -122 140 99 183 80 0 0 chr1 221774948 221774973 -60418691 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr1 221775652 221775674 -60417990 + AT_rich Low_complexity Low_complexity 1 22 0 185 280 20 0 chr1 221776491 221776541 -60417123 - L2 LINE L2 -4 3268 3218 278 269 15 0 chr1 221776800 221776867 -60416797 + MLT1J1 LTR MaLR 5 72 -374 314 323 25 25 chr1 221776957 221777118 -60416546 + MLT1J1 LTR MaLR 265 425 -21 1281 106 207 0 chr1 221781025 221781279 -60412385 - L1PA11 LINE L1 -1 6160 5864 28 0 0 0 chr1 221781340 221781368 -60412296 + AT_rich Low_complexity Low_complexity 1 28 0 511 176 0 0 chr1 221782354 221782439 -60411225 - AluJ/FLAM SINE Alu -225 87 3 1935 128 3 44 chr1 221782861 221783182 -60410482 + AluSx SINE Alu 5 312 0 32 0 0 0 chr1 221783935 221783967 -60409697 + AT_rich Low_complexity Low_complexity 1 32 0 295 273 25 33 chr1 221783976 221784097 -60409567 - Charlie7 DNA MER1_type -52 2560 2441 465 274 59 62 chr1 221784150 221784456 -60409208 - Charlie7 DNA MER1_type -313 2299 1995 246 285 132 14 chr1 221784499 221784643 -60409021 - Charlie7 DNA MER1_type -767 1845 1685 377 284 0 0 chr1 221784727 221784836 -60408828 - Charlie7 DNA MER1_type -2176 436 328 13733 138 40 11 chr1 221784919 221787268 -60406396 - Tigger1 DNA MER2_type 0 2418 2 1321 200 46 39 chr1 221787280 221787560 -60406104 - AluJo SINE Alu -12 300 19 408 235 12 0 chr1 221787662 221787747 -60405917 - AluJ/FLAM SINE Alu -226 86 1 273 250 57 23 chr1 221787748 221787836 -60405828 - Charlie7 DNA MER1_type -2521 91 1 219 330 106 0 chr1 221787983 221788077 -60405587 - MIR SINE MIR -67 141 41 335 316 131 43 chr1 221788375 221788952 -60404712 - L2 LINE L2 0 3313 2685 1199 227 46 80 chr1 221789008 221789422 -60404242 + MSTB2 LTR MaLR 23 422 -35 439 262 177 0 chr1 221789420 221789561 -60404103 + MSTB2 LTR MaLR 113 278 -179 * 743 184 107 0 chr1 221789828 221789996 -60403668 + LTR47A LTR ERVL 261 446 -6 690 182 6 79 chr1 221790002 221790167 -60403497 + MSTB2 LTR MaLR 274 426 -31 333 188 14 0 chr1 221790270 221790339 -60403325 + MSTB1 LTR MaLR 363 432 0 2982 155 19 0 chr1 221790354 221790889 -60402775 + L1 LINE L1 4353 4897 -1249 339 83 0 0 chr1 221790879 221790927 -60402737 + L1MA5 LINE L1 6166 6213 -87 * 258 184 0 0 chr1 221790930 221790979 -60402685 + L1MA5 LINE L1 6252 6300 0 1653 214 16 13 chr1 221790992 221791376 -60402288 + L1 LINE L1 4888 5272 -874 207 200 0 0 chr1 221791376 221791411 -60402253 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 231 177 32 0 chr1 221791411 221791473 -60402191 - L1MC4 LINE L1 -1339 6703 6640 786 106 6 123 chr1 221791540 221791710 -60401954 - L1 LINE L1 -1357 4789 4640 3000 230 41 11 chr1 221791718 221793043 -60400621 + L1MB8 LINE L1 4516 5882 -296 5094 158 43 28 chr1 221793045 221794626 -60399038 + L1MA4 LINE L1 4685 6286 -14 2211 109 3 0 chr1 221794653 221794946 -60398718 + AluSx SINE Alu 5 298 -14 1096 205 43 18 chr1 221794952 221795230 -60398434 + L1MB8 LINE L1 5888 6172 -6 409 342 180 0 chr1 221795253 221795598 -60398066 - L2 LINE L2 -811 2503 2097 23 68 0 0 chr1 221795789 221795833 -60397831 + AT_rich Low_complexity Low_complexity 1 44 0 234 205 0 0 chr1 221796838 221796877 -60396787 - MLT1L LTR MaLR -428 187 149 192 40 0 0 chr1 221796954 221796979 -60396685 + (T)n Simple_repeat Simple_repeat 1 25 0 23 54 0 0 chr1 221797106 221797143 -60396521 + AT_rich Low_complexity Low_complexity 1 37 0 293 239 112 112 chr1 221797367 221797524 -60396140 - MER5A DNA MER1_type -1 188 29 3341 123 31 2 chr1 221797524 221798075 -60395589 - L1MA2 LINE L1 0 6304 5738 293 239 112 112 chr1 221798075 221798105 -60395559 - MER5A DNA MER1_type -159 30 1 2490 48 0 3 chr1 221798207 221798519 -60395145 - AluY SINE Alu 0 311 1 901 171 104 21 chr1 221798577 221798770 -60394894 - MER3 DNA MER1_type 0 209 1 374 286 255 8 chr1 221799010 221799121 -60394543 + L1MEd LINE L1 81 163 -5956 2102 110 3 41 chr1 221799121 221799440 -60394224 - AluSp SINE Alu -6 307 1 374 286 255 8 chr1 221799440 221799681 -60393983 + L1MEd LINE L1 163 520 -5599 294 349 0 0 chr1 221799698 221799781 -60393883 + L1MEd LINE L1 584 666 -5453 25 31 0 0 chr1 221800685 221800717 -60392947 + AT_rich Low_complexity Low_complexity 1 32 0 21 89 0 0 chr1 221801595 221801651 -60392013 + AT_rich Low_complexity Low_complexity 1 56 0 363 213 0 0 chr1 221801669 221801749 -60391915 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 1778 114 36 0 chr1 221801880 221802160 -60391504 - L1PA13 LINE L1 0 6163 5874 808 234 54 9 chr1 221802278 221802500 -60391164 - MER96B DNA MER1_type? -185 232 1 234 0 0 0 chr1 221804791 221804817 -60388847 + (TG)n Simple_repeat Simple_repeat 2 27 0 1514 216 0 3 chr1 221804837 221805133 -60388531 - AluJo SINE Alu -17 295 1 702 82 0 0 chr1 221806510 221806608 -60387056 + L1PA4 LINE L1 6058 6155 0 407 304 158 21 chr1 221806839 221807079 -60386585 - MLT1J LTR MaLR -238 273 1 234 303 227 0 chr1 221808523 221808655 -60385009 - MIR SINE MIR -46 216 55 198 379 68 0 chr1 221808980 221809083 -60384581 - MIR SINE MIR -119 143 34 3295 151 16 0 chr1 221809173 221809735 -60383929 - L1PA16 LINE L1 -15 6151 5581 1395 193 4 8 chr1 221809821 221810070 -60383594 + AluJo SINE Alu 39 286 -26 407 203 0 0 chr1 221810486 221810555 -60383109 + Tigger2 DNA MER2_type 1 69 -2649 * 2217 169 47 29 chr1 221810539 221810983 -60382681 + Tigger2 DNA MER2_type 2267 2718 0 182 114 0 29 chr1 221811068 221811103 -60382561 + (TA)n Simple_repeat Simple_repeat 1 34 0 777 235 123 15 chr1 221812643 221812903 -60380761 - L1ME3A LINE L1 -4 6166 5879 4463 61 13 45 chr1 221812962 221813902 -60379762 - MER11A LTR ERVK 0 1266 136 1977 108 52 3 chr1 221813902 221814189 -60379475 + AluY SINE Alu 1 301 -10 4463 61 13 45 chr1 221814189 221814321 -60379343 - MER11A LTR ERVK -1130 136 1 1205 175 0 58 chr1 221814321 221814578 -60379086 - AluJb SINE Alu -70 242 1 1362 258 87 5 chr1 221814578 221815126 -60378538 - L1ME3A LINE L1 -287 5875 5202 1381 198 8 4 chr1 221815152 221815432 -60378232 - AluJb SINE Alu 0 305 25 223 105 0 0 chr1 221815560 221815598 -60378066 + L2 LINE L2 3276 3313 0 22 70 0 0 chr1 221815834 221815877 -60377787 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 221816055 221816077 -60377587 + AT_rich Low_complexity Low_complexity 1 22 0 465 82 0 14 chr1 221816566 221816639 -60377025 - L1MA3 LINE L1 0 6305 6234 1099 292 39 60 chr1 221816835 221817393 -60376271 - L2 LINE L2 0 3313 2781 2048 115 13 13 chr1 221817393 221817705 -60375959 - AluSx SINE Alu 0 312 1 1099 292 39 60 chr1 221817705 221818020 -60375644 - L2 LINE L2 -532 2781 2461 276 86 0 0 chr1 221819669 221819704 -60373960 - U2 snRNA snRNA -153 35 1 1146 195 220 7 chr1 221820366 221820648 -60373016 - MER7A DNA MER2_type 0 346 7 24 0 0 0 chr1 221822787 221822811 -60370853 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr1 221822874 221822923 -60370741 + AT_rich Low_complexity Low_complexity 1 49 0 1355 192 0 73 chr1 221823970 221824283 -60369381 + AluJo SINE Alu 5 294 -8 190 406 0 0 chr1 221824720 221824821 -60368843 + MIR SINE MIR 156 256 -6 273 197 246 12 chr1 221824846 221824932 -60368732 + MIR SINE MIR 45 149 -65 1241 113 47 5 chr1 221825102 221825314 -60368350 + L1PA13 LINE L1 5940 6160 -3 417 153 0 0 chr1 221825518 221825590 -60368074 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 22 0 0 0 chr1 221825814 221825836 -60367828 + AT_rich Low_complexity Low_complexity 1 22 0 865 250 45 4 chr1 221827847 221828091 -60365573 + L1MD3 LINE L1 7742 7995 0 301 346 146 22 chr1 221828317 221828762 -60364902 - L2 LINE L2 -592 2722 2223 4110 129 45 4 chr1 221830090 221830895 -60362769 - L1PA16 LINE L1 -58 6108 5219 2301 101 0 7 chr1 221832475 221832782 -60360882 - AluSq SINE Alu 0 313 9 382 327 67 14 chr1 221833627 221833850 -60359814 + L1MC/D LINE L1 5539 5773 -2035 24 32 0 0 chr1 221834996 221835027 -60358637 + AT_rich Low_complexity Low_complexity 1 31 0 195 386 136 28 chr1 221835465 221835929 -60357735 - L2 LINE L2 -469 2845 2332 25 31 0 0 chr1 221836251 221836283 -60357381 + AT_rich Low_complexity Low_complexity 1 32 0 2006 84 22 4 chr1 221836289 221836603 -60357061 + AluSc SINE Alu 1 319 0 23 0 0 0 chr1 221836787 221836810 -60356854 + AT_rich Low_complexity Low_complexity 1 23 0 476 267 193 20 chr1 221837071 221837423 -60356241 + HAL1 LINE L1 1206 1618 -889 * 1143 280 33 8 chr1 221837412 221837776 -60355888 + L1MD2 LINE L1 4923 5295 -851 746 172 0 64 chr1 221837776 221837933 -60355731 + FRAM SINE Alu 1 144 -32 2299 243 73 29 chr1 221837967 221838287 -60355377 + L1MD2 LINE L1 5270 5574 -785 306 0 0 0 chr1 221838287 221838321 -60355343 + (CA)n Simple_repeat Simple_repeat 2 35 0 2299 243 73 29 chr1 221838321 221838838 -60354826 + L1MD2 LINE L1 5574 6144 -215 403 234 32 65 chr1 221838840 221838994 -60354670 + L1MD2 LINE L1 6201 6349 -10 372 296 136 29 chr1 221840201 221840407 -60353257 + MIR SINE MIR 20 247 -15 268 401 126 19 chr1 221840519 221840893 -60352771 - L2 LINE L2 0 3272 2859 1989 142 3 0 chr1 221841190 221841500 -60352164 + AluSq SINE Alu 1 311 -2 50 31 0 0 chr1 221842377 221842441 -60351223 + AT_rich Low_complexity Low_complexity 1 64 0 826 268 31 9 chr1 221843050 221843278 -60350386 + MARNA DNA Mariner 12 244 -342 21 71 0 0 chr1 221843398 221843440 -60350224 + AT_rich Low_complexity Low_complexity 1 42 0 469 280 0 0 chr1 221844272 221844391 -60349273 + MIR SINE MIR 55 172 -66 29 70 0 0 chr1 221845238 221845295 -60348369 + AT_rich Low_complexity Low_complexity 1 57 0 213 228 158 40 chr1 221845664 221845765 -60347899 - MIR SINE MIR -62 200 88 1648 214 127 37 chr1 221845877 221845967 -60347697 - MLT1D LTR MaLR 0 505 425 2117 124 51 25 chr1 221845967 221846322 -60347342 - THE1B LTR MaLR 0 364 1 1648 214 127 37 chr1 221846322 221846694 -60346970 - MLT1D LTR MaLR -80 425 1 29 60 0 0 chr1 221847973 221848023 -60345641 + AT_rich Low_complexity Low_complexity 1 50 0 336 278 139 21 chr1 221849681 221849875 -60343789 + MIR SINE MIR 37 253 -9 392 331 97 54 chr1 221850505 221850783 -60342881 + L2 LINE L2 341 630 -2684 28 29 0 0 chr1 221852746 221852781 -60340883 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 221852827 221852862 -60340802 + AT_rich Low_complexity Low_complexity 1 35 0 2028 128 0 26 chr1 221852986 221853292 -60340372 - AluSx SINE Alu -9 303 6 202 320 0 0 chr1 221853306 221853356 -60340308 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 1940 142 0 23 chr1 221853356 221853659 -60340005 - AluSx SINE Alu -16 296 1 211 164 36 36 chr1 221853840 221853895 -60339769 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 26 74 0 0 chr1 221854128 221854182 -60339482 + AT_rich Low_complexity Low_complexity 1 54 0 348 112 65 41 chr1 221857052 221857222 -60336442 + (TA)n Simple_repeat Simple_repeat 2 175 0 201 255 21 0 chr1 221857786 221857833 -60335831 - L2 LINE L2 -1 3312 3265 21 57 0 0 chr1 221859225 221859260 -60334404 + AT_rich Low_complexity Low_complexity 1 35 0 180 331 37 52 chr1 221859871 221860007 -60333657 - L2 LINE L2 -692 2622 2489 403 255 148 20 chr1 221860495 221860644 -60333020 + MIR SINE MIR 3 170 -92 29 90 0 0 chr1 221861163 221861241 -60332423 + AT_rich Low_complexity Low_complexity 1 78 0 191 309 159 63 chr1 221862318 221862713 -60330951 - L2 LINE L2 -1 3312 2880 195 220 0 0 chr1 221862814 221862864 -60330800 + GA-rich Low_complexity Low_complexity 2 51 0 323 263 21 0 chr1 221862894 221862989 -60330675 - MIR SINE MIR -56 206 110 333 186 0 0 chr1 221865004 221865074 -60328590 + (TA)n Simple_repeat Simple_repeat 2 71 0 209 267 17 9 chr1 221865122 221865238 -60328426 + (TA)n Simple_repeat Simple_repeat 1 117 0 625 317 134 44 chr1 221865313 221866133 -60327531 + L2 LINE L2 1951 2844 -470 21 57 0 0 chr1 221866391 221866426 -60327238 + AT_rich Low_complexity Low_complexity 1 35 0 2020 130 7 3 chr1 221866942 221867242 -60326422 - AluSx SINE Alu -11 301 1 227 310 0 35 chr1 221867872 221867959 -60325705 - L2 LINE L2 -832 2482 2399 279 347 78 63 chr1 221868994 221869262 -60324402 + L2 LINE L2 2705 2976 -338 183 273 195 0 chr1 221869323 221869400 -60324264 + L2 LINE L2 3222 3313 0 265 264 41 23 chr1 221869462 221869572 -60324092 - MIR SINE MIR -76 132 12 378 267 53 40 chr1 221869846 221869996 -60323668 - MIR SINE MIR -71 191 40 443 303 0 9 chr1 221870108 221870217 -60323447 - L2 LINE L2 -5 3267 3160 2119 116 0 10 chr1 221870246 221870547 -60323117 + AluSq SINE Alu 1 298 -15 2181 272 11 31 chr1 221873276 221873916 -60319748 + L1M4 LINE L1 105 731 -5811 1538 237 58 32 chr1 221873909 221874181 -60319483 + L1M4 LINE L1 2645 2908 -3736 * 2215 96 0 0 chr1 221874181 221874472 -60319192 + AluY SINE Alu 1 291 -20 1538 237 58 32 chr1 221874472 221874735 -60318929 + L1M4 LINE L1 2908 3194 -3450 264 229 0 33 chr1 221876294 221876355 -60317309 - MIR SINE MIR -125 137 79 2329 83 7 0 chr1 221876587 221876888 -60316776 + AluSq SINE Alu 1 303 -10 1164 131 16 5 chr1 221877133 221877324 -60316340 - L1PA7 LINE L1 -4 6150 5958 233 352 148 0 chr1 221877844 221878006 -60315658 - MIR3 SINE MIR -13 195 10 234 0 0 0 chr1 221880268 221880294 -60313370 + (TA)n Simple_repeat Simple_repeat 2 27 0 35 54 0 0 chr1 221880655 221880711 -60312953 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr1 221880938 221880961 -60312703 + AT_rich Low_complexity Low_complexity 1 23 0 970 182 71 0 chr1 221883109 221883307 -60310357 + L1MC1 LINE L1 6122 6333 0 623 255 36 8 chr1 221883494 221883741 -60309923 - LTR37B LTR ERV1 0 468 215 1162 147 20 5 chr1 221883755 221883953 -60309711 - AluSg/x SINE Alu 0 312 112 1469 250 26 58 chr1 221884730 221885198 -60308466 - LTR40b LTR ERVL -8 454 2 206 418 14 7 chr1 221887048 221887189 -60306475 - L2 LINE L2 0 3313 3172 1804 202 95 14 chr1 221889771 221890201 -60303463 - MLT1C LTR MaLR 0 467 3 929 264 135 50 chr1 221890561 221890962 -60302702 - LTR41 LTR ERVL 0 773 339 600 205 33 0 chr1 221891000 221891122 -60302542 - LTR41 LTR ERVL -640 133 8 671 222 62 62 chr1 221891294 221891537 -60302127 + MER46C DNA MER2_type 95 337 -1 546 313 40 57 chr1 221891586 221891938 -60301726 + L1MB2 LINE L1 3 348 -5543 344 297 39 39 chr1 221892062 221892190 -60301474 + L1MB2 LINE L1 226 353 -5538 7612 211 57 26 chr1 221892226 221894413 -60299251 + L1MB2 LINE L1 3029 5313 -679 186 43 0 0 chr1 221894413 221894436 -60299228 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 7612 211 57 26 chr1 221894436 221894791 -60298873 + L1MB2 LINE L1 5313 5656 -336 471 250 10 0 chr1 221894828 221894928 -60298736 - Tigger3b DNA MER2_type 0 1241 1141 1990 146 82 18 chr1 221894939 221895281 -60298383 + THE1B LTR MaLR 1 364 0 * 5694 131 56 49 chr1 221895281 221896352 -60297312 - Tigger3b DNA MER2_type -101 1130 52 361 118 0 26 chr1 221896353 221896429 -60297235 + (TA)n Simple_repeat Simple_repeat 1 74 0 525 164 0 55 chr1 221896492 221896602 -60297062 + L1MB2 LINE L1 5729 5832 -160 1985 189 77 55 chr1 221896602 221897072 -60296592 - MLT2B3 LTR ERVL 0 554 75 414 152 0 0 chr1 221897171 221897237 -60296427 - MLT2B3 LTR ERVL -486 68 3 695 162 37 0 chr1 221897239 221897375 -60296289 + L1MB2 LINE L1 5828 5968 -27 23 0 0 0 chr1 221897506 221897529 -60296135 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 221898363 221898384 -60295280 + AT_rich Low_complexity Low_complexity 1 21 0 1845 126 47 108 chr1 221899392 221899553 -60294111 + MER67C LTR ERV1 1 170 -466 1906 109 3 44 chr1 221899553 221899901 -60293763 - AluSc SINE Alu 0 336 1 1845 126 47 108 chr1 221899901 221900132 -60293532 + MER67C LTR ERV1 170 402 -234 225 167 42 21 chr1 221900145 221900193 -60293471 + MER67D LTR ERV1 358 406 -108 4480 178 29 84 chr1 221900229 221900772 -60292892 + L1PA16 LINE L1 4634 5205 -961 516 139 0 0 chr1 221900772 221900851 -60292813 - AluSc SINE Alu -118 191 113 4480 178 29 84 chr1 221900851 221901847 -60291817 + L1PA16 LINE L1 5205 6160 -6 189 171 0 0 chr1 221902908 221902943 -60290721 + GA-rich Low_complexity Low_complexity 3 37 0 571 282 89 58 chr1 221903110 221903401 -60290263 - L2 LINE L2 0 3313 3014 2821 66 3 0 chr1 221903405 221903769 -60289895 - L1PA8A LINE L1 -269 5862 5498 390 121 0 0 chr1 221903769 221903826 -60289838 + L1PA7 LINE L1 6087 6144 -10 193 325 96 41 chr1 221903877 221904074 -60289590 - L2 LINE L2 -359 2955 2748 302 337 41 31 chr1 221904199 221904297 -60289367 - MIR3 SINE MIR -52 156 58 22 35 0 0 chr1 221904724 221904753 -60288911 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 221905540 221905562 -60288102 + AT_rich Low_complexity Low_complexity 1 22 0 291 54 0 0 chr1 221905957 221905994 -60287670 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 601 186 64 0 chr1 221906695 221906835 -60286829 - L1MB1 LINE L1 -1 6167 6019 3155 149 151 7 chr1 221907198 221907816 -60285848 - MER39 LTR ERV1 0 707 1 228 200 0 0 chr1 221908791 221908846 -60284818 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 282 358 109 7 chr1 221909310 221909447 -60284217 - L2 LINE L2 -4 3268 3118 * 294 322 59 30 chr1 221909430 221909632 -60284032 - L2 LINE L2 -3 3310 3103 584 227 28 0 chr1 221909875 221910016 -60283648 + LTR52 LTR ERVL 255 399 -22 22 70 0 0 chr1 221910316 221910359 -60283305 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr1 221911609 221911637 -60282027 + AT_rich Low_complexity Low_complexity 1 28 0 262 78 20 20 chr1 221912476 221912527 -60281137 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 28 71 0 0 chr1 221912834 221912890 -60280774 + AT_rich Low_complexity Low_complexity 1 56 0 324 0 0 0 chr1 221914062 221914098 -60279566 + (CA)n Simple_repeat Simple_repeat 2 37 0 194 361 10 0 chr1 221916934 221917031 -60276633 - MIR3 SINE MIR -11 197 100 21 0 0 0 chr1 221917071 221917092 -60276572 + AT_rich Low_complexity Low_complexity 1 21 0 356 278 142 18 chr1 221918279 221918448 -60275216 - MIR SINE MIR -8 254 65 7794 31 0 1 chr1 221920864 221921800 -60271864 - L1PA5 LINE L1 -1446 4700 3766 7399 37 5 0 chr1 221921800 221923247 -60270417 + L1PA5 LINE L1 4693 6146 -8 24 0 0 0 chr1 221923247 221923271 -60270393 + AT_rich Low_complexity Low_complexity 1 24 0 3182 57 5 0 chr1 221923443 221923848 -60269816 + L1PA7 LINE L1 5744 6150 -4 33 66 0 0 chr1 221923858 221923919 -60269745 + AT_rich Low_complexity Low_complexity 1 61 0 26 30 0 0 chr1 221924478 221924511 -60269153 + AT_rich Low_complexity Low_complexity 1 33 0 207 139 0 0 chr1 221924691 221924727 -60268937 + (GAA)n Simple_repeat Simple_repeat 2 37 0 1790 28 0 0 chr1 221924908 221925122 -60268542 + L1PA4 LINE L1 5939 6152 -3 198 0 0 0 chr1 221925125 221925147 -60268517 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr1 221925239 221925275 -60268389 + AT_rich Low_complexity Low_complexity 1 36 0 433 328 124 0 chr1 221925396 221925597 -60268067 - MIR SINE MIR 0 262 37 216 210 65 0 chr1 221927728 221927790 -60265874 + MER5C DNA MER1_type 1 66 -258 1211 208 5 0 chr1 221928012 221928233 -60265431 + MER58A DNA MER1_type 1 222 -2 2327 101 0 3 chr1 221929045 221929353 -60264311 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr1 221930077 221930098 -60263566 + AT_rich Low_complexity Low_complexity 1 21 0 300 149 0 0 chr1 221931322 221931369 -60262295 + Charlie3 DNA MER1_type 2656 2702 -8 282 243 155 10 chr1 221931369 221931472 -60262192 + MIR SINE MIR 102 219 -43 237 263 84 66 chr1 221931958 221932171 -60261493 + L1MB7 LINE L1 5602 5818 -303 261 330 32 32 chr1 221932446 221932631 -60261033 - L2 LINE L2 -28 3285 3101 591 237 22 22 chr1 221932681 221932816 -60260848 - MLT1E LTR MaLR -30 624 490 12022 185 32 77 chr1 221932873 221934913 -60258751 + L1MA4A LINE L1 1 2131 -4874 2149 144 0 0 chr1 221934913 221935225 -60258439 + AluSx SINE Alu 1 312 0 12022 185 32 77 chr1 221935225 221938513 -60255151 + L1MA4A LINE L1 2131 5566 -1439 1766 158 48 45 chr1 221938513 221938887 -60254777 + THE1C LTR MaLR 1 375 0 9077 149 11 37 chr1 221938890 221940509 -60253155 + THE1C-int LTR MaLR 4 1580 0 897 257 89 166 chr1 221940510 221940973 -60252691 + THE1C LTR MaLR 2 428 0 12022 185 32 77 chr1 221940973 221942961 -60250703 + L1MA4A LINE L1 5567 6996 -9 4280 172 32 5 chr1 221942965 221943439 -60250225 - L1MA9 LINE L1 -33 6279 5771 216 97 0 0 chr1 221943439 221943470 -60250194 + (TATG)n Simple_repeat Simple_repeat 4 34 0 4280 172 32 5 chr1 221943470 221943834 -60249830 - L1MA9 LINE L1 -541 5771 5418 663 241 47 103 chr1 221943837 221944093 -60249571 - MLT1E LTR MaLR -176 478 175 2203 129 0 0 chr1 221944093 221944403 -60249261 - AluSx SINE Alu -2 310 1 663 241 47 103 chr1 221944403 221944506 -60249158 - MLT1E LTR MaLR -479 175 68 251 319 0 14 chr1 221944546 221944618 -60249046 - L2 LINE L2 -261 3052 2982 1039 324 58 5 chr1 221944644 221945021 -60248643 + LTR16A LTR ERVL 54 450 0 189 0 0 0 chr1 221945114 221945135 -60248529 + (A)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr1 221945279 221945323 -60248341 + AT_rich Low_complexity Low_complexity 1 44 0 281 280 40 0 chr1 221946433 221946508 -60247156 - MIR SINE MIR -111 151 74 618 244 29 0 chr1 221946901 221947073 -60246591 + L1MB7 LINE L1 5999 6175 -9 30 45 0 0 chr1 221947111 221947155 -60246509 + AT_rich Low_complexity Low_complexity 1 44 0 1710 199 13 5 chr1 221947660 221948126 -60245538 - MLT2B1 LTR ERVL 0 520 1 1175 180 40 5 chr1 221948772 221948994 -60244670 + MLT2B3 LTR ERVL 1 230 -324 22 56 0 0 chr1 221949345 221949381 -60244283 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr1 221949417 221949442 -60244222 + AT_rich Low_complexity Low_complexity 1 25 0 1495 279 94 60 chr1 221949725 221950933 -60242731 - L2 LINE L2 0 3313 2071 245 203 31 31 chr1 221951234 221951298 -60242366 - L2 LINE L2 0 3272 3209 2146 117 0 0 chr1 221951365 221951648 -60242016 + AluSg SINE Alu 1 283 -27 510 269 90 12 chr1 221951898 221952234 -60241430 + MLT1G LTR MaLR 153 587 -3 270 268 152 7 chr1 221952252 221952390 -60241274 - MIR SINE MIR -56 206 49 194 271 0 0 chr1 221954178 221954226 -60239438 - L2 LINE L2 -3 3310 3263 256 243 41 30 chr1 221954567 221954736 -60238928 + (TA)n Simple_repeat Simple_repeat 1 171 0 6075 87 9 20 chr1 221955126 221956010 -60237654 + L1PA8A LINE L1 5257 6130 -1 326 374 36 6 chr1 221957331 221957497 -60236167 - MER20 DNA MER1_type -19 200 30 564 309 37 0 chr1 221958679 221958870 -60234794 - MIR SINE MIR -12 250 53 541 157 286 29 chr1 221959100 221959240 -60234424 - MER5B DNA MER1_type 0 178 3 248 290 97 7 chr1 221959818 221959963 -60233701 - MIR SINE MIR -67 141 19 797 249 78 66 chr1 221961857 221962114 -60231550 + MIR SINE MIR 3 262 0 475 354 39 69 chr1 221965202 221965566 -60228098 - L2 LINE L2 -1 3271 2919 302 340 62 3 chr1 221965912 221966062 -60227602 - MIR SINE MIR -58 150 43 1657 217 3 19 chr1 221966366 221966744 -60226920 - MLT1A2 LTR MaLR 0 374 3 24 0 0 0 chr1 221967421 221967445 -60226219 + AT_rich Low_complexity Low_complexity 1 24 0 5672 192 81 23 chr1 221967759 221968030 -60225634 + Charlie1a DNA MER1_type 2 256 -2505 2259 98 7 7 chr1 221968030 221968337 -60225327 + AluSq SINE Alu 1 307 -6 5672 192 81 23 chr1 221968337 221969440 -60224224 + Charlie1a DNA MER1_type 256 1455 0 26 0 0 0 chr1 221969487 221969513 -60224151 + AT_rich Low_complexity Low_complexity 1 26 0 831 316 43 47 chr1 221970554 221971060 -60222604 + MLT1J LTR MaLR 1 504 -7 21 0 0 0 chr1 221971109 221971130 -60222534 + AT_rich Low_complexity Low_complexity 1 21 0 2630 41 0 10 chr1 221972155 221972469 -60221195 + AluY SINE Alu 1 311 0 219 331 234 8 chr1 221973441 221973565 -60220099 + L2 LINE L2 3121 3272 0 386 89 0 0 chr1 221973792 221973848 -60219816 - L1PA6 LINE L1 0 6154 6099 3894 66 4 7 chr1 221973948 221974645 -60219019 - L1PA6 LINE L1 -383 5771 5076 184 186 0 23 chr1 221974667 221974710 -60218954 - L2 LINE L2 -1 3312 3271 7004 162 23 31 chr1 221974810 221977315 -60216349 - L1MA3 LINE L1 -1 7723 5241 * 8329 186 50 29 chr1 221977313 221979494 -60214170 - L1MA3 LINE L1 -4227 3338 9 2397 70 0 13 chr1 221979601 221979900 -60213764 + AluY SINE Alu 13 307 -4 21 36 0 0 chr1 221980162 221980190 -60213474 + AT_rich Low_complexity Low_complexity 1 28 0 465 246 65 22 chr1 221980491 221980629 -60213035 - MER103 DNA DNA -6 160 17 1657 294 84 91 chr1 221980730 221981269 -60212395 + L2 LINE L2 1466 2007 -1307 237 33 0 0 chr1 221981269 221981299 -60212365 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1657 294 84 91 chr1 221981299 221982281 -60211383 + L2 LINE L2 2007 2977 -337 227 286 38 38 chr1 221982533 221982638 -60211026 + L2 LINE L2 3168 3272 0 247 275 34 112 chr1 221983309 221983487 -60210177 + MER5B DNA MER1_type 10 173 -5 234 0 0 0 chr1 221983522 221983548 -60210116 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2878 158 86 26 chr1 221984092 221984663 -60209001 + LTR9 LTR ERV1 1 605 -7 259 305 116 0 chr1 221985489 221985584 -60208080 + MIR SINE MIR 91 196 -66 449 278 136 18 chr1 221986141 221986310 -60207354 + MIR SINE MIR 74 262 0 21 71 0 0 chr1 221986837 221986879 -60206785 + AT_rich Low_complexity Low_complexity 1 42 0 277 289 33 0 chr1 221986953 221987043 -60206621 - ORSL DNA AcHobo -2 273 181 550 277 107 30 chr1 221987148 221987643 -60206021 - L1M4 LINE L1 -1537 4609 4077 446 248 85 53 chr1 221987685 221988177 -60205487 - L1M4 LINE L1 -2902 3244 2737 303 287 62 34 chr1 221988239 221988448 -60205216 - L1M4 LINE L1 -3597 2549 2335 22 0 0 0 chr1 221988556 221988578 -60205086 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr1 221988607 221988652 -60205012 + AT_rich Low_complexity Low_complexity 1 45 0 3938 157 95 21 chr1 221988756 221989525 -60204139 + LTR1B LTR ERV1 1 826 0 381 43 0 0 chr1 221989734 221989781 -60203883 + (TG)n Simple_repeat Simple_repeat 2 48 0 1157 90 0 0 chr1 221989782 221989926 -60203738 - AluSg/x SINE Alu -25 287 144 2910 40 3 0 chr1 221989951 221990302 -60203362 - L1PA3 LINE L1 -1 6154 5803 5624 47 1 0 chr1 221990402 221991110 -60202554 - L1PA3 LINE L1 -2229 3917 3209 * 29412 27 0 1 chr1 221991107 221995436 -60198228 + L1PA2 LINE L1 1826 6153 -2 7789 15 0 0 chr1 221995546 221996471 -60197193 + L1P LINE L1 2292 3216 -2930 861 241 92 116 chr1 221997796 221997899 -60195765 - L1MC4 LINE L1 -1 8041 7937 3552 44 0 0 chr1 221997899 221998333 -60195331 - L1PA5 LINE L1 -2 6152 5719 861 241 92 116 chr1 221998333 221998611 -60195053 - L1MC4 LINE L1 -105 7937 7680 2134 129 10 0 chr1 221998611 221998920 -60194744 - AluSx SINE Alu 0 312 1 861 241 92 116 chr1 221998920 221999200 -60194464 - L1MC4 LINE L1 -362 7680 7395 1712 188 86 6 chr1 221999729 222000090 -60193574 + MLT1B LTR MaLR 1 390 0 363 282 88 71 chr1 222001538 222001708 -60191956 + MIR SINE MIR 34 206 -56 366 23 0 0 chr1 222002083 222002126 -60191538 + (TG)n Simple_repeat Simple_repeat 2 44 0 211 296 0 0 chr1 222002126 222002180 -60191484 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 28 0 0 0 chr1 222002629 222002657 -60191007 + AT_rich Low_complexity Low_complexity 1 28 0 838 248 105 107 chr1 222002742 222003212 -60190452 + L1MC4 LINE L1 6632 7081 -880 580 286 168 0 chr1 222003248 222003444 -60190220 + LTR16A LTR ERVL 217 445 -5 982 284 86 60 chr1 222003453 222004037 -60189627 + HERV16 LTR ERVL 1 599 -4397 308 292 21 10 chr1 222004038 222004134 -60189530 + LTR16A LTR ERVL 350 446 -4 876 193 156 115 chr1 222004138 222004935 -60188729 + L1MC5 LINE L1 7085 7913 -48 1987 162 15 0 chr1 222005050 222005578 -60188086 + L1P5 LINE L1 5051 5584 -572 1523 173 0 0 chr1 222005578 222005821 -60187843 + AluSx SINE Alu 1 243 -69 518 157 12 0 chr1 222005821 222005904 -60187760 - AluJ/FLAM SINE Alu -226 86 3 2140 249 94 12 chr1 222005912 222006892 -60186772 + L1ME2 LINE L1 2245 3304 -2842 319 269 13 0 chr1 222006925 222007003 -60186661 - L1 LINE L1 -1687 4459 4381 1329 273 109 29 chr1 222007016 222007680 -60185984 + L1ME2 LINE L1 4360 5110 -1036 1563 241 63 16 chr1 222007680 222008124 -60185540 + MLT1C LTR MaLR 3 467 0 1329 273 109 29 chr1 222008124 222008320 -60185344 + L1ME2 LINE L1 5110 5289 -857 1131 222 108 13 chr1 222008454 222008807 -60184857 + L1ME2 LINE L1 5346 5741 -423 1407 183 93 7 chr1 222008807 222009096 -60184568 - MLT1B LTR MaLR 0 390 77 4742 91 159 107 chr1 222009098 222010573 -60183091 - pTR5 LTR ERV1 0 2438 748 535 128 0 12 chr1 222010573 222010659 -60183005 - MLT1B LTR MaLR -305 85 1 2181 199 53 5 chr1 222010697 222011130 -60182534 + MLT2C2 LTR ERVL 1 454 -10 1443 204 28 53 chr1 222011133 222011529 -60182135 + L1ME2 LINE L1 5779 6164 0 42902 32 21 1 chr1 222011537 222017565 -60176099 + L1PA2 LINE L1 4 6153 -2 29 70 0 0 chr1 222017599 222017656 -60176008 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr1 222018377 222018405 -60175259 + AT_rich Low_complexity Low_complexity 1 28 0 303 293 10 10 chr1 222018415 222018514 -60175150 + GA-rich Low_complexity Low_complexity 1 99 0 228 259 0 0 chr1 222018993 222019047 -60174617 - L2 LINE L2 -4 3309 3256 2358 63 13 10 chr1 222019342 222019645 -60174019 + AluY SINE Alu 2 305 -6 2922 125 9 2 chr1 222019763 222020194 -60173470 - MER57B LTR ERV1 0 434 1 977 271 72 28 chr1 222020440 222021030 -60172634 - L2 LINE L2 -145 3168 2541 394 279 41 81 chr1 222021230 222021427 -60172237 - MIR SINE MIR 0 262 74 2110 106 3 7 chr1 222021743 222022063 -60171601 - AluSg SINE Alu 0 319 1 272 299 127 8 chr1 222022286 222022420 -60171244 + MIR3 SINE MIR 50 199 -9 191 156 0 0 chr1 222022720 222022752 -60170912 + MER5C DNA MER1_type 1 32 -292 324 70 0 0 chr1 222022784 222022827 -60170837 + (TG)n Simple_repeat Simple_repeat 2 44 0 284 320 98 25 chr1 222023136 222023258 -60170406 + MIR3 SINE MIR 5 135 -73 762 43 0 0 chr1 222024367 222024461 -60169203 + (GGAA)n Simple_repeat Simple_repeat 1 94 0 223 143 18 18 chr1 222024687 222024743 -60168921 + A-rich Low_complexity Low_complexity 2 57 0 219 250 0 0 chr1 222025491 222025551 -60168113 + (TA)n Simple_repeat Simple_repeat 2 61 0 2273 103 3 0 chr1 222025643 222025934 -60167730 - AluSx SINE Alu -20 292 1 25 31 0 0 chr1 222026020 222026052 -60167612 + AT_rich Low_complexity Low_complexity 1 32 0 1837 173 0 7 chr1 222026113 222026408 -60167256 - AluJb SINE Alu -19 293 1 201 194 167 28 chr1 222026542 222026614 -60167050 + MIR SINE MIR 125 206 -56 421 278 34 74 chr1 222027048 222027224 -60166440 - Charlie8 DNA MER1_type -2154 263 95 367 323 113 0 chr1 222027602 222027735 -60165929 - L2 LINE L2 -3 3269 3122 522 0 0 0 chr1 222029074 222029132 -60164532 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 2198 104 0 0 chr1 222029134 222029414 -60164250 - AluSg SINE Alu -30 280 1 21 0 0 0 chr1 222029747 222029768 -60163896 + AT_rich Low_complexity Low_complexity 1 21 0 294 117 58 29 chr1 222030155 222030258 -60163406 + (TA)n Simple_repeat Simple_repeat 1 106 0 869 118 44 0 chr1 222030615 222030750 -60162914 - FLAM_C SINE Alu -2 141 1 1302 202 15 8 chr1 222031577 222031839 -60161825 + Tigger4(Zombi) DNA MER2_type 1 264 -2467 1495 121 5 0 chr1 222031839 222032063 -60161601 + Tigger4(Zombi) DNA MER2_type 2507 2731 0 337 167 0 35 chr1 222032065 222032179 -60161485 + (TA)n Simple_repeat Simple_repeat 1 110 0 217 360 40 0 chr1 222032345 222032445 -60161219 + MIR SINE MIR 63 166 -96 208 410 48 0 chr1 222032581 222032686 -60160978 - L2 LINE L2 0 3272 3163 281 289 31 10 chr1 222033169 222033266 -60160398 - MER5A DNA MER1_type -48 141 43 * 314 356 8 0 chr1 222033179 222033297 -60160367 + MER5A DNA MER1_type 71 189 0 232 240 54 132 chr1 222034391 222034542 -60159122 + MER5A DNA MER1_type 15 162 -27 395 318 103 23 chr1 222034999 222035213 -60158451 + MIR SINE MIR 20 250 -12 1981 270 117 35 chr1 222036233 222037145 -60156519 + L2 LINE L2 1897 2993 -320 2264 90 0 26 chr1 222037145 222037455 -60156209 - AluSq SINE Alu -11 302 1 1981 270 117 35 chr1 222037455 222037796 -60155868 + L2 LINE L2 2993 3305 -8 44 56 0 0 chr1 222039216 222039288 -60154376 + AT_rich Low_complexity Low_complexity 1 72 0 2959 295 130 19 chr1 222039423 222041156 -60152508 - L2 LINE L2 -2 3311 1368 899 281 121 43 chr1 222041893 222042330 -60151334 - L2 LINE L2 0 3313 2843 238 189 132 0 chr1 222042333 222042386 -60151278 - MER45A DNA AcHobo -4 174 115 7327 49 1 0 chr1 222042390 222044005 -60149659 - L1PA6 LINE L1 0 6154 4539 2364 85 3 0 chr1 222044005 222044335 -60149329 - L1PA6 LINE L1 -2064 4082 3752 491 240 16 39 chr1 222044336 222044465 -60149199 - MER45A DNA AcHobo -52 126 1 1667 220 142 47 chr1 222044465 222045037 -60148627 - L2 LINE L2 -465 2849 2224 22 70 0 0 chr1 222046782 222046825 -60146839 + AT_rich Low_complexity Low_complexity 1 43 0 776 226 42 42 chr1 222046928 222047145 -60146519 - MER20 DNA MER1_type -1 218 2 4037 94 2 7 chr1 222048154 222048718 -60144946 - L1PA7 LINE L1 -1 6153 5593 5275 76 9 4 chr1 222048718 222049605 -60144059 + L1P2 LINE L1 4659 5551 -603 21 0 0 0 chr1 222049672 222049693 -60143971 + AT_rich Low_complexity Low_complexity 1 21 0 285 323 51 43 chr1 222051655 222051840 -60141824 - MIR SINE MIR -56 206 21 196 388 62 22 chr1 222051937 222052115 -60141549 - MIR3 SINE MIR -21 187 3 284 292 21 119 chr1 222052541 222052777 -60140887 + L2 LINE L2 2942 3154 -118 1533 186 22 29 chr1 222053206 222053518 -60140146 - AluJo SINE Alu 0 312 3 244 172 0 62 chr1 222054387 222054451 -60139213 + LTR33A LTR ERVL 457 516 -7 1289 219 7 17 chr1 222054498 222054790 -60138874 + MER67B LTR ERV1 11 299 -362 517 176 0 0 chr1 222054795 222054880 -60138784 + MER67B LTR ERV1 504 588 -73 763 118 0 25 chr1 222054880 222054999 -60138665 - FLAM_C SINE Alu 0 143 28 365 167 103 0 chr1 222054999 222055077 -60138587 + MER67B LTR ERV1 576 661 0 23 54 0 0 chr1 222055140 222055177 -60138487 + AT_rich Low_complexity Low_complexity 1 37 0 2312 99 3 0 chr1 222055507 222055809 -60137855 + AluSx SINE Alu 1 303 -9 26 101 0 0 chr1 222058352 222058441 -60135223 + AT_rich Low_complexity Low_complexity 1 89 0 908 236 195 56 chr1 222058497 222058958 -60134706 - MLT1H LTR MaLR -2 547 23 275 302 110 63 chr1 222059191 222059370 -60134294 - L1ME LINE L1 -394 5768 5599 1093 174 76 54 chr1 222059370 222059614 -60134050 - MER33 DNA MER1_type -2261 324 87 234 0 0 0 chr1 222059614 222059640 -60134024 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2184 96 0 24 chr1 222059642 222059934 -60133730 - AluSq SINE Alu -28 285 1 1093 174 76 54 chr1 222059934 222060003 -60133661 - MER33 DNA MER1_type -2498 87 1 275 302 110 63 chr1 222060003 222060124 -60133540 - L1ME LINE L1 -563 5599 5454 856 219 27 5 chr1 222060131 222060350 -60133314 + L1MD3 LINE L1 7771 7994 -1 246 176 0 0 chr1 222060965 222061016 -60132648 + A-rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr1 222061353 222061388 -60132276 + AT_rich Low_complexity Low_complexity 1 35 0 704 195 0 8 chr1 222061392 222061515 -60132149 - FLAM_C SINE Alu -21 122 1 2166 125 0 3 chr1 222062592 222062904 -60130760 + AluSx SINE Alu 1 311 -1 258 32 0 0 chr1 222062977 222063008 -60130656 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 603 266 101 20 chr1 222063224 222063423 -60130241 + MIR SINE MIR 37 251 -11 199 275 183 8 chr1 222063427 222063547 -60130117 + MIR SINE MIR 73 213 -49 303 331 151 0 chr1 222064978 222065150 -60128514 + MIR SINE MIR 23 220 -42 2189 92 0 39 chr1 222065233 222065538 -60128126 + AluSg SINE Alu 3 295 -15 3551 268 24 30 chr1 222066513 222067525 -60126139 + L1MEc LINE L1 148 1153 -5243 875 66 16 0 chr1 222067525 222067647 -60126017 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 3551 268 24 30 chr1 222067647 222067834 -60125830 + L1MEc LINE L1 1153 1340 -5056 1691 241 41 19 chr1 222067837 222068608 -60125056 + L1MEc LINE L1 1995 2752 -3463 11742 123 45 1 chr1 222068608 222070423 -60123241 - Tigger1 DNA MER2_type 0 2418 523 1376 94 219 0 chr1 222070448 222070681 -60122983 + Tigger1 DNA MER2_type 1497 1780 -638 * 2851 174 20 0 chr1 222070679 222071185 -60122479 - Tigger1 DNA MER2_type -1902 516 1 1760 231 55 17 chr1 222071185 222071712 -60121952 + L1MEc LINE L1 2751 3297 -2918 2186 106 6 13 chr1 222071923 222072235 -60121429 + AluSg SINE Alu 1 310 0 914 301 75 24 chr1 222072339 222072751 -60120913 + LTR16A LTR ERVL 18 450 0 36 23 0 0 chr1 222072887 222072930 -60120734 + AT_rich Low_complexity Low_complexity 1 43 0 390 322 42 0 chr1 222073534 222073652 -60120012 + MIR SINE MIR 67 189 -73 1394 187 27 30 chr1 222074405 222074704 -60118960 + AluJo SINE Alu 6 303 -9 327 246 17 123 chr1 222075067 222075246 -60118418 - MLT1L LTR MaLR -66 542 286 260 325 13 0 chr1 222075516 222075593 -60118071 + L2 LINE L2 3194 3271 -1 1381 264 64 39 chr1 222075624 222076175 -60117489 - L2 LINE L2 -5 3308 2749 352 163 23 12 chr1 222076699 222076785 -60116879 + GA-rich Low_complexity Low_complexity 2 88 0 248 137 20 0 chr1 222077184 222077235 -60116429 + GA-rich Low_complexity Low_complexity 2 53 0 217 250 120 33 chr1 222079144 222079236 -60114428 - MIR SINE MIR -122 140 41 246 149 27 14 chr1 222079551 222079625 -60114039 + (TA)n Simple_repeat Simple_repeat 2 76 0 2111 127 117 38 chr1 222079918 222080313 -60113351 - MSTB LTR MaLR 0 426 1 9415 163 22 2 chr1 222080314 222081933 -60111731 - MSTA-int LTR MaLR 0 1651 1 2216 156 74 15 chr1 222081933 222082337 -60111327 - MSTA LTR MaLR 0 428 1 248 348 139 0 chr1 222083487 222083602 -60110062 + L2 LINE L2 3134 3264 -8 1530 169 23 10 chr1 222083954 222084256 -60109408 + L1MC1 LINE L1 6022 6327 -6 22 56 0 0 chr1 222086001 222086037 -60107627 + AT_rich Low_complexity Low_complexity 1 36 0 197 346 140 0 chr1 222088924 222089031 -60104633 + MIR3 SINE MIR 68 189 -19 23 0 0 0 chr1 222090947 222090970 -60102694 + AT_rich Low_complexity Low_complexity 1 23 0 228 307 48 102 chr1 222091292 222091458 -60102206 - MER5A DNA MER1_type 0 189 33 691 177 77 0 chr1 222092499 222092629 -60101035 - AluJb SINE Alu -5 307 168 2056 128 21 0 chr1 222092887 222093176 -60100488 - AluSx SINE Alu -17 295 1 244 225 11 22 chr1 222093976 222094065 -60099599 + GA-rich Low_complexity Low_complexity 4 91 0 231 426 49 5 chr1 222094874 222095078 -60098586 - L2 LINE L2 -235 3037 2825 463 337 71 0 chr1 222095195 222095379 -60098285 - MIR SINE MIR -19 243 47 184 366 58 35 chr1 222095424 222095596 -60098068 - L2 LINE L2 -586 2728 2553 225 0 0 0 chr1 222096094 222096119 -60097545 + (A)n Simple_repeat Simple_repeat 1 25 0 275 213 67 0 chr1 222097726 222097801 -60095863 + MLT1J1 LTR MaLR 1 80 -366 281 277 27 36 chr1 222097953 222098065 -60095599 + MLT1J1 LTR MaLR 100 210 -236 527 342 29 22 chr1 222099851 222100129 -60093535 + LTR16A LTR ERVL 18 297 -153 253 313 20 30 chr1 222100455 222100554 -60093110 - MIR SINE MIR -74 188 91 537 16 0 0 chr1 222101854 222101916 -60091748 + (TG)n Simple_repeat Simple_repeat 2 63 0 2015 126 11 0 chr1 222102514 222102799 -60090865 + AluSg SINE Alu 1 288 -22 341 389 7 7 chr1 222104251 222104400 -60089264 - MIR3 SINE MIR -6 202 54 1755 183 77 34 chr1 222104475 222104853 -60088811 - MSTD LTR MaLR -2 394 1 325 120 0 83 chr1 222106304 222106437 -60087227 + (GGA)n Simple_repeat Simple_repeat 1 122 0 1716 167 23 29 chr1 222107498 222107846 -60085818 + MLT2C1 LTR ERVL 3 348 -49 269 169 5 0 chr1 222107887 222107946 -60085718 + MLT2C1 LTR ERVL 357 397 0 194 308 217 50 chr1 222108230 222108350 -60085314 + L2 LINE L2 3133 3272 0 348 260 87 19 chr1 222108368 222108472 -60085192 - L2 LINE L2 -2 3270 3160 401 313 41 69 chr1 222108863 222109109 -60084555 + MIR SINE MIR 19 257 -5 276 324 176 7 chr1 222109332 222109468 -60084196 - MIR3 SINE MIR 0 208 50 615 290 75 5 chr1 222109745 222109945 -60083719 - MIR SINE MIR -24 238 25 27 49 0 0 chr1 222111068 222111109 -60082555 + AT_rich Low_complexity Low_complexity 1 41 0 268 138 121 17 chr1 222111280 222111338 -60082326 - LTR23-int LTR ERV1 -2306 2817 2754 276 325 55 91 chr1 222111654 222111928 -60081736 - L3 LINE CR1 -13 1564 1301 331 281 42 0 chr1 222111996 222112092 -60081572 + L2 LINE L2 3173 3272 0 370 350 186 8 chr1 222112111 222112600 -60081064 - L3 LINE CR1 -266 1311 736 195 42 0 0 chr1 222113244 222113268 -60080396 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 268 322 27 27 chr1 222113588 222113737 -60079927 + L2 LINE L2 1734 1882 -1432 22 0 0 0 chr1 222114916 222114938 -60078726 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr1 222115355 222115402 -60078262 + AT_rich Low_complexity Low_complexity 1 47 0 214 349 19 0 chr1 222115637 222115736 -60077928 + MIR SINE MIR 34 137 -71 623 239 9 0 chr1 222116548 222116661 -60077003 + FLAM_A SINE Alu 1 114 -19 821 190 6 26 chr1 222116673 222117017 -60076647 + GA-rich Low_complexity Low_complexity 1 337 0 1150 78 12 0 chr1 222117017 222117184 -60076480 + (GGAA)n Simple_repeat Simple_repeat 3 171 0 400 310 89 25 chr1 222117664 222117867 -60075797 - L2 LINE L2 -167 3146 2931 873 161 7 13 chr1 222117959 222118108 -60075556 + AluJb SINE Alu 90 237 -75 2078 137 3 18 chr1 222168847 222169190 -60024474 - MER1B DNA MER1_type 0 339 2 386 342 7 77 chr1 222169476 222169592 -60024072 + L2 LINE L2 2564 2687 -627 2377 66 0 34 chr1 222169592 222169912 -60023752 - AluSc SINE Alu 0 309 1 386 342 7 77 chr1 222169912 222170093 -60023571 + L2 LINE L2 2687 2840 -474 840 197 0 43 chr1 222170153 222170341 -60023323 - L1PB1 LINE L1 0 6151 5972 1942 159 0 7 chr1 222170608 222170916 -60022748 - AluSx SINE Alu -4 308 3 4191 66 4 5 chr1 222171047 222171606 -60022058 + L1PA8 LINE L1 5607 6164 -8 23 0 0 0 chr1 222171606 222171629 -60022035 + AT_rich Low_complexity Low_complexity 1 23 0 617 246 84 42 chr1 222173337 222173646 -60020018 + L1ME4a LINE L1 5501 5822 -299 234 139 0 0 chr1 222173809 222173852 -60019812 + L1ME4a LINE L1 5968 6010 -111 1788 42 0 0 chr1 222173891 222174108 -60019556 + L1PA5 LINE L1 5931 6147 -7 31 88 0 0 chr1 222174113 222174193 -60019471 + AT_rich Low_complexity Low_complexity 1 80 0 21 82 0 0 chr1 222174313 222174362 -60019302 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr1 222174406 222174437 -60019227 + AT_rich Low_complexity Low_complexity 1 31 0 779 330 29 7 chr1 222175334 222175640 -60018024 - MLT1I LTR MaLR -33 376 64 236 100 25 0 chr1 222175874 222175914 -60017750 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 201 159 0 0 chr1 222176348 222176392 -60017272 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 584 135 36 9 chr1 222177040 222177151 -60016513 + L1MA10 LINE L1 6186 6299 -35 507 282 128 32 chr1 222178420 222178608 -60015056 - MIR SINE MIR -26 236 31 21 0 0 0 chr1 222180344 222180365 -60013299 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 222180957 222180984 -60012680 + AT_rich Low_complexity Low_complexity 1 27 0 309 320 0 0 chr1 222181148 222181245 -60012419 + MIR3 SINE MIR 97 193 -15 2385 100 0 0 chr1 222181266 222181575 -60012089 - AluSc SINE Alu 0 309 1 3542 170 28 33 chr1 222181838 222182184 -60011480 + L1MA9 LINE L1 5560 5906 -406 2374 100 0 0 chr1 222182184 222182493 -60011171 + AluSg SINE Alu 1 309 -1 3542 170 28 33 chr1 222182493 222182897 -60010767 + L1MA9 LINE L1 5906 6306 -6 36347 95 12 9 chr1 222182966 222189093 -60004571 - L1PA6 LINE L1 -3 6151 11 204 179 0 0 chr1 222189402 222189441 -60004223 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 333 0 0 0 chr1 222190813 222190850 -60002814 + (CA)n Simple_repeat Simple_repeat 2 38 0 2087 130 36 33 chr1 222190881 222191242 -60002422 + THE1B LTR MaLR 3 364 0 240 196 65 0 chr1 222191630 222191676 -60001988 + MIR3 SINE MIR 115 163 -45 35 41 0 0 chr1 222192030 222192079 -60001585 + AT_rich Low_complexity Low_complexity 1 49 0 30 27 0 0 chr1 222192204 222192241 -60001423 + AT_rich Low_complexity Low_complexity 1 37 0 431 308 0 77 chr1 222193302 222193471 -60000193 + MIR SINE MIR 21 176 -86 298 231 46 37 chr1 222193629 222193737 -59999927 - L2 LINE L2 -837 2477 2369 438 347 77 22 chr1 222194033 222194307 -59999357 - L2 LINE L2 0 3313 3025 276 30 0 0 chr1 222194371 222194404 -59999260 + (TG)n Simple_repeat Simple_repeat 2 34 0 4311 136 13 70 chr1 222194404 222194734 -59998930 - L1MB1 LINE L1 -19 6149 5802 1879 145 0 14 chr1 222194734 222195031 -59998633 - AluJb SINE Alu -19 293 1 4311 136 13 70 chr1 222195031 222195549 -59998115 - L1MB1 LINE L1 -366 5802 5349 1811 195 43 0 chr1 222195547 222195917 -59997747 + L1 LINE L1 4767 5152 -994 * 547 158 4 161 chr1 222196039 222196284 -59997380 + L1 LINE L1 5152 5357 -801 211 316 38 0 chr1 222197290 222197369 -59996295 - MIR SINE MIR -61 201 120 444 325 35 15 chr1 222198541 222198744 -59994920 - MIR SINE MIR -27 235 29 273 295 63 48 chr1 222199281 222199488 -59994176 - MIR SINE MIR -6 256 47 222 219 12 110 chr1 222199742 222199824 -59993840 + L2 LINE L2 3238 3311 -2 200 366 15 8 chr1 222199830 222199961 -59993703 + L2 LINE L2 2430 2561 -753 675 296 5 15 chr1 222201486 222201692 -59991972 - MIR SINE MIR -2 260 57 1303 272 61 51 chr1 222202327 222202918 -59990746 + L2 LINE L2 2314 2910 -404 14227 53 2 1 chr1 222202955 222205541 -59988123 - L1PA5 LINE L1 0 6154 3565 24073 84 10 6 chr1 222205541 222208850 -59984814 - L1PA5 LINE L1 -2823 3323 2 488 250 242 8 chr1 222208869 222209117 -59984547 + L2 LINE L2 2920 3225 -88 693 253 75 43 chr1 222209271 222209619 -59984045 - L1MA9 LINE L1 -40 6272 5914 415 157 0 0 chr1 222209604 222209674 -59983990 + L1MA9 LINE L1 5868 5937 -375 * 3749 115 39 7 chr1 222209841 222210432 -59983232 + MER4B LTR ERV1 1 610 0 1107 167 72 14 chr1 222211678 222211839 -59981825 - MER106A DNA MER1_type 0 236 57 243 0 0 0 chr1 222211839 222211866 -59981798 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1107 167 72 14 chr1 222211866 222211926 -59981738 - MER106A DNA MER1_type -179 57 2 211 299 52 0 chr1 222212260 222212337 -59981327 + MIR SINE MIR 88 168 -94 481 291 29 29 chr1 222212375 222212550 -59981114 - MER110 LTR ERV1 -12 479 305 2290 101 51 28 chr1 222212550 222212905 -59980759 - THE1B LTR MaLR 0 364 2 10057 105 8 5 chr1 222212906 222214291 -59979373 - THE1B-int LTR MaLR 0 1580 192 351 93 37 0 chr1 222214288 222214342 -59979322 - THE1B-int LTR MaLR -1524 56 1 * 1208 126 21 63 chr1 222214342 222214581 -59979083 - THE1B LTR MaLR 0 364 136 2239 104 3 10 chr1 222214930 222215229 -59978435 + AluSp SINE Alu 1 297 -16 510 353 24 5 chr1 222215666 222215873 -59977791 + MIR SINE MIR 48 258 -4 1802 187 34 13 chr1 222216408 222216773 -59976891 + MLT1A1 LTR MaLR 1 428 0 1509 184 10 31 chr1 222217273 222217411 -59976253 + AluJb SINE Alu 1 140 -172 2173 104 0 36 chr1 222217411 222217719 -59975945 + AluSx SINE Alu 3 299 -13 1509 184 10 31 chr1 222217719 222217874 -59975790 + AluJb SINE Alu 140 288 -24 962 203 52 19 chr1 222217945 222218157 -59975507 - MER20 DNA MER1_type 0 219 1 180 0 0 0 chr1 222218774 222218794 -59974870 + (A)n Simple_repeat Simple_repeat 1 20 0 1690 144 65 0 chr1 222218861 222219138 -59974526 - AluJb SINE Alu -17 295 1 311 317 119 13 chr1 222219901 222220128 -59973536 - MIR SINE MIR -10 252 2 495 359 48 0 chr1 222220725 222220934 -59972730 - MIR SINE MIR -30 232 14 32 75 0 0 chr1 222221285 222221352 -59972312 + AT_rich Low_complexity Low_complexity 1 67 0 230 329 13 0 chr1 222222609 222222688 -59970976 - MIR SINE MIR -60 202 123 614 186 0 0 chr1 222222713 222222810 -59970854 + AluS SINE Alu 4 100 -212 1629 136 0 4 chr1 222222810 222223045 -59970619 + AluSx SINE Alu 59 292 -20 3803 177 27 24 chr1 222223426 222224132 -59969532 - MER44D DNA MER2_type -25 580 1 3216 155 18 20 chr1 222224521 222225121 -59968543 - L1MA4 LINE L1 -7 6293 5695 2135 219 26 11 chr1 222225422 222225878 -59967786 + MLT2B1 LTR ERVL 1 463 -57 270 176 0 0 chr1 222225889 222225940 -59967724 + (TA)n Simple_repeat Simple_repeat 1 51 0 483 133 35 0 chr1 222225952 222226065 -59967599 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 473 360 53 31 chr1 222226286 222226794 -59966870 - L2 LINE L2 -534 2780 2262 519 17 0 0 chr1 222226805 222226865 -59966799 + (TG)n Simple_repeat Simple_repeat 2 61 0 419 155 0 155 chr1 222227399 222227502 -59966162 + MLT1B LTR MaLR 1 87 -303 686 162 15 17 chr1 222227552 222227688 -59965976 + MLT2B1 LTR ERVL 90 229 -215 1130 157 42 65 chr1 222227725 222227986 -59965678 + MLT1B LTR MaLR 82 336 -54 2038 138 3 0 chr1 222228645 222228936 -59964728 - AluSx SINE Alu -20 292 1 410 329 61 0 chr1 222229620 222229784 -59963880 + MER91A DNA MER1_type 1 174 -22 501 100 62 0 chr1 222230381 222230461 -59963203 - L1PA11 LINE L1 -1 6173 6089 336 298 48 60 chr1 222231366 222231534 -59962130 - HAL1b LINE L1 -7 1341 1176 1046 223 66 4 chr1 222231780 222232022 -59961642 + MLT1F1 LTR MaLR 308 564 -3 22 35 0 0 chr1 222232061 222232090 -59961574 + AT_rich Low_complexity Low_complexity 1 29 0 303 312 47 59 chr1 222232118 222232371 -59961293 - L1M4c LINE L1 -5164 1220 971 1569 239 9 11 chr1 222232650 222233005 -59960659 + MLT1A1 LTR MaLR 10 455 -2 15035 153 29 30 chr1 222233581 222236144 -59957520 + L1M1 LINE L1 12 2571 -4994 7256 161 21 20 chr1 222236666 222239112 -59954552 + L1M1 LINE L1 2540 4980 -2585 3102 140 8 14 chr1 222239112 222239626 -59954038 + MER75 DNA T2_type 2 512 -2 7256 161 21 20 chr1 222239626 222239901 -59953763 + L1M1 LINE L1 4980 5253 -2312 3193 261 68 34 chr1 222239915 222241284 -59952380 + L1M1 LINE L1 2011 3426 -4139 2361 89 0 7 chr1 222241288 222241591 -59952073 + AluY SINE Alu 1 301 -10 24 0 0 0 chr1 222242057 222242081 -59951583 + AT_rich Low_complexity Low_complexity 1 24 0 2429 61 0 0 chr1 222243126 222243419 -59950245 - AluY SINE Alu -18 293 1 493 303 69 5 chr1 222243853 222244041 -59949623 + MIR SINE MIR 31 230 -32 801 203 25 6 chr1 222244678 222244841 -59948823 - FAM SINE Alu -9 166 1 418 303 38 54 chr1 222245178 222245364 -59948300 + MIR SINE MIR 20 201 -57 30 59 0 0 chr1 222245365 222245416 -59948248 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chr1 222245655 222245681 -59947983 + (TATAA)n Simple_repeat Simple_repeat 1 26 0 295 296 144 0 chr1 222245955 222246080 -59947584 + MIR SINE MIR 1 143 -119 2116 101 27 7 chr1 222246340 222246637 -59947027 + AluSq SINE Alu 3 305 -8 579 244 181 9 chr1 222248425 222248480 -59945184 - MIR SINE MIR 0 262 218 219 88 0 0 chr1 222248480 222248514 -59945150 + (TG)n Simple_repeat Simple_repeat 2 35 0 579 244 181 9 chr1 222248514 222248679 -59944985 - MIR SINE MIR -44 218 4 1493 187 40 43 chr1 222249024 222249398 -59944266 + MLT1A2 LTR MaLR 2 374 0 269 252 87 10 chr1 222249616 222249719 -59943945 - MIR SINE MIR -130 132 22 461 47 16 0 chr1 222251066 222251130 -59942534 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1070 145 0 0 chr1 222251926 222252085 -59941579 + FRAM SINE Alu 1 159 -7 1606 212 30 27 chr1 222252869 222253242 -59940422 - MLT1A2 LTR MaLR 0 374 1 478 242 14 28 chr1 222253971 222254133 -59939531 - L1MA10 LINE L1 -5 6161 6007 2389 79 0 31 chr1 222254431 222254749 -59938915 - AluSq SINE Alu -5 308 1 378 42 0 0 chr1 222255320 222255368 -59938296 + (TG)n Simple_repeat Simple_repeat 1 48 0 468 139 0 0 chr1 222255368 222255447 -59938217 + (GA)n Simple_repeat Simple_repeat 2 80 0 512 277 134 9 chr1 222255920 222256151 -59937513 + MIR SINE MIR 3 262 0 2202 107 10 0 chr1 222256271 222256571 -59937093 - AluSg SINE Alu -7 303 1 1822 205 12 0 chr1 222256859 222257200 -59936464 - MER7A DNA MER2_type -1 345 3 194 324 29 0 chr1 222257718 222257786 -59935878 + L2 LINE L2 3226 3295 -18 345 304 87 35 chr1 222257967 222258253 -59935411 + L1MC4 LINE L1 7602 7902 -140 401 302 20 28 chr1 222258674 222258845 -59934819 - MER5B DNA MER1_type -12 166 8 22 80 0 0 chr1 222259061 222259111 -59934553 + AT_rich Low_complexity Low_complexity 1 50 0 216 158 0 0 chr1 222259220 222259258 -59934406 + (TA)n Simple_repeat Simple_repeat 1 38 0 963 126 126 0 chr1 222259259 222259426 -59934238 + L1MA7 LINE L1 5783 5970 -321 1952 112 75 19 chr1 222259426 222259937 -59933727 + MER51A LTR ERV1 1 618 -16 1499 160 58 26 chr1 222259966 222260278 -59933386 + L1MA7 LINE L1 5966 6287 -4 223 226 19 0 chr1 222260509 222260562 -59933102 + (TA)n Simple_repeat Simple_repeat 2 55 0 666 276 74 52 chr1 222260823 222261269 -59932395 - L1ME LINE L1 -4427 1834 1379 1311 198 37 4 chr1 222261290 222261558 -59932106 - AluJo SINE Alu -30 282 6 962 264 96 56 chr1 222261582 222262390 -59931274 - L1ME LINE L1 -4763 1317 455 1150 71 0 13 chr1 222262440 222262594 -59931070 - AluY SINE Alu -1 310 159 438 323 97 47 chr1 222262903 222263265 -59930399 - L1ME LINE L1 -5636 434 55 548 275 42 79 chr1 222263546 222263786 -59929878 - MIR SINE MIR 0 262 32 21 0 0 0 chr1 222264182 222264203 -59929461 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 222264873 222264894 -59928770 + (A)n Simple_repeat Simple_repeat 1 21 0 1913 112 40 14 chr1 222266124 222266401 -59927263 - AluSq SINE Alu -29 284 1 2358 94 0 0 chr1 222268620 222268927 -59924737 + AluY SINE Alu 1 307 -4 184 333 0 0 chr1 222269088 222269145 -59924519 - L2 LINE L2 -5 3308 3252 377 190 174 16 chr1 222269361 222269482 -59924182 + MIR SINE MIR 123 262 0 23 78 0 0 chr1 222270364 222270415 -59923249 + AT_rich Low_complexity Low_complexity 1 51 0 2350 100 0 0 chr1 222270797 222271106 -59922558 - AluSc SINE Alu 0 309 1 625 192 42 12 chr1 222271349 222271516 -59922148 + pTR5 LTR ERV1 1173 1344 -1094 4038 129 62 90 chr1 222271532 222272378 -59921286 + LTR12 LTR ERV1 5 826 0 2488 81 0 0 chr1 222273182 222273491 -59920173 - AluY SINE Alu -1 310 2 270 303 66 0 chr1 222273492 222273568 -59920096 + L2 LINE L2 3192 3272 0 1259 208 65 7 chr1 222274480 222274588 -59919076 + AluJo SINE Alu 1 101 -211 2168 47 0 50 chr1 222274588 222274887 -59918777 + L1PA4 LINE L1 5870 6153 -2 1259 208 65 7 chr1 222274887 222275057 -59918607 + AluJo SINE Alu 101 295 -17 189 289 0 0 chr1 222276142 222276194 -59917470 + MIR SINE MIR 114 165 -97 4263 102 18 8 chr1 222276262 222276868 -59916796 - LTR9 LTR ERV1 0 612 1 6556 180 35 16 chr1 222277854 222280412 -59913252 - L1MC1 LINE L1 -2 6331 3725 712 230 132 17 chr1 222280583 222280818 -59912846 - MIR SINE MIR 0 262 1 233 299 94 26 chr1 222280925 222281042 -59912622 - L2 LINE L2 -1 3312 3188 474 320 153 53 chr1 222281052 222281762 -59911902 - L2 LINE L2 -251 3062 2304 1198 284 256 17 chr1 222282018 222282119 -59911545 + L2 LINE L2 1225 1301 -2013 2240 112 0 0 chr1 222282119 222282413 -59911251 - AluSg SINE Alu -13 297 4 1198 284 256 17 chr1 222282413 222283344 -59910320 + L2 LINE L2 1301 2503 -811 273 281 125 0 chr1 222283340 222283436 -59910228 - MIR SINE MIR -107 155 48 * 1145 207 4 17 chr1 222284532 222284764 -59908900 - L1MD3 LINE L1 -334 7661 7433 1841 180 0 3 chr1 222285573 222285862 -59907802 + AluSx SINE Alu 5 292 -20 28 29 0 0 chr1 222288799 222288834 -59904830 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 222288940 222288968 -59904696 + AT_rich Low_complexity Low_complexity 1 28 0 3064 122 15 81 chr1 222289054 222289406 -59904258 + L1MA3 LINE L1 5732 6029 -276 1537 200 3 17 chr1 222289406 222289701 -59903963 + AluJo SINE Alu 1 291 -21 3064 122 15 81 chr1 222289701 222289956 -59903708 + L1MA3 LINE L1 6029 6299 -6 22 0 0 0 chr1 222289956 222289978 -59903686 + AT_rich Low_complexity Low_complexity 1 22 0 251 170 90 70 chr1 222289985 222290085 -59903579 + LTR66 LTR ERVL 343 444 -166 312 91 0 0 chr1 222290250 222290294 -59903370 + (CA)n Simple_repeat Simple_repeat 1 44 0 769 247 61 80 chr1 222290297 222290637 -59903027 + L1ME LINE L1 4957 5300 -864 1459 131 55 4 chr1 222290637 222290911 -59902753 + L1MA9 LINE L1 6018 6305 -7 769 247 61 80 chr1 222290911 222291225 -59902439 + L1ME LINE L1 5300 5618 -546 529 286 39 59 chr1 222291227 222291482 -59902182 - MER34 LTR ERV1 -2 540 291 451 310 32 32 chr1 222291509 222291725 -59901939 - MER34 LTR ERV1 -326 216 1 660 222 32 53 chr1 222291764 222291935 -59901729 + Charlie1 DNA MER1_type 1 169 -2592 240 86 0 0 chr1 222291935 222291970 -59901694 + (CA)n Simple_repeat Simple_repeat 2 36 0 660 222 32 53 chr1 222291970 222291987 -59901677 + Charlie1 DNA MER1_type 169 185 -2576 235 220 0 34 chr1 222292364 222292423 -59901241 + MIR SINE MIR 95 151 -111 605 244 31 19 chr1 222292579 222292739 -59900925 + MER97b DNA MER1_type? 2 163 -890 2001 310 172 48 chr1 222292748 222292796 -59900868 + L2 LINE L2 1070 1111 -2203 1851 112 65 24 chr1 222292796 222293090 -59900574 - AluSx SINE Alu -6 306 1 2001 310 172 48 chr1 222293090 222294726 -59898938 + L2 LINE L2 1111 2963 -351 21 0 0 0 chr1 222295619 222295640 -59898024 + AT_rich Low_complexity Low_complexity 1 21 0 296 242 0 0 chr1 222296673 222296735 -59896929 + L2 LINE L2 3251 3312 -1 709 191 8 0 chr1 222296897 222297023 -59896641 - MER20 DNA MER1_type 0 219 93 354 179 30 0 chr1 222297208 222297275 -59896389 - MER20 DNA MER1_type -147 72 4 1893 155 3 3 chr1 222297800 222298097 -59895567 - AluSx SINE Alu -15 297 1 2327 123 3 6 chr1 222298358 222298716 -59894948 - L1PB1 LINE L1 -1 6150 5794 351 0 0 0 chr1 222298719 222298758 -59894906 + (TA)n Simple_repeat Simple_repeat 2 40 0 313 322 0 0 chr1 222298787 222298877 -59894787 + L1MC4 LINE L1 6614 6703 -1339 227 73 49 0 chr1 222298901 222298942 -59894722 + LTR66 LTR ERVL 398 440 -170 393 117 0 0 chr1 222298961 222299021 -59894643 + (TG)n Simple_repeat Simple_repeat 2 61 0 12597 184 14 8 chr1 222299022 222300403 -59893261 - L1P5 LINE L1 -360 6507 5137 594 0 0 0 chr1 222300403 222300469 -59893195 + (TTTTA)n Simple_repeat Simple_repeat 2 67 0 12597 184 14 8 chr1 222300469 222302292 -59891372 - L1P5 LINE L1 -1730 5137 3280 7972 129 64 13 chr1 222302288 222303717 -59889947 - L1P5 LINE L1 -3973 2890 1390 * 812 271 17 0 chr1 222303716 222303952 -59889712 - L1P5 LINE L1 -6593 270 31 * 21 57 0 0 chr1 222304309 222304344 -59889320 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 222304614 222304638 -59889026 + AT_rich Low_complexity Low_complexity 1 24 0 24 85 0 0 chr1 222304836 222304895 -59888769 + AT_rich Low_complexity Low_complexity 1 59 0 510 312 6 6 chr1 222307327 222307484 -59886180 + MIR SINE MIR 1 157 -105 28 71 0 0 chr1 222307601 222307657 -59886007 + AT_rich Low_complexity Low_complexity 1 56 0 1128 196 5 0 chr1 222309004 222309232 -59884432 - AluJb SINE Alu 0 312 84 236 250 0 62 chr1 222309334 222309398 -59884266 - L2 LINE L2 -5 3308 3249 435 249 138 37 chr1 222309549 222309738 -59883926 + MIR SINE MIR 40 247 -15 210 300 14 14 chr1 222309808 222309878 -59883786 - MIR SINE MIR -101 161 92 2007 149 0 7 chr1 222310746 222311054 -59882610 - AluSx SINE Alu -4 308 3 239 339 17 0 chr1 222311054 222311172 -59882492 - L1 LINE L1 -2443 3703 3584 4383 55 2 4 chr1 222311185 222311744 -59881920 + L1PA8 LINE L1 5607 6164 -8 23 0 0 0 chr1 222311744 222311767 -59881897 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr1 222312936 222312973 -59880691 + AT_rich Low_complexity Low_complexity 1 37 0 2372 146 62 25 chr1 222313445 222313880 -59879784 + LTR36 LTR ERV1 1 451 -160 2296 96 196 3 chr1 222313880 222314257 -59879407 - LTR7 LTR ERV1 0 450 1 1189 76 13 0 chr1 222314257 222314412 -59879252 + LTR36 LTR ERV1 447 603 -8 268 367 116 23 chr1 222314735 222315089 -59878575 - L2 LINE L2 -375 2939 2553 1141 146 45 25 chr1 222315116 222315315 -59878349 + AluJo SINE Alu 86 288 -24 31 76 0 0 chr1 222315315 222315381 -59878283 + AT_rich Low_complexity Low_complexity 1 66 0 362 304 151 51 chr1 222315404 222315736 -59877928 - L2 LINE L2 -810 2504 2140 266 116 93 0 chr1 222315761 222315804 -59877860 - MSTB LTR MaLR -375 51 5 474 18 0 0 chr1 222315866 222315921 -59877743 + (T)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr1 222316230 222316254 -59877410 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr1 222316294 222316338 -59877326 + AT_rich Low_complexity Low_complexity 1 44 0 242 167 118 39 chr1 222317319 222317421 -59876243 + MLT1H LTR MaLR 338 447 -102 1749 175 7 7 chr1 222317498 222317806 -59875858 + AluJo SINE Alu 1 308 -4 1907 172 91 13 chr1 222317867 222318262 -59875402 + MSTA LTR MaLR 1 426 -2 1572 185 7 40 chr1 222318268 222318566 -59875098 - AluJo SINE Alu -24 288 1 2131 125 3 0 chr1 222318819 222319141 -59874523 - AluSx SINE Alu 0 312 1 985 182 29 0 chr1 222319357 222319527 -59874137 + FAM SINE Alu 1 175 0 6112 138 63 19 chr1 222322069 222323375 -59870289 + L1MC1 LINE L1 4981 6331 -2 21 0 0 0 chr1 222324194 222324215 -59869449 + AT_rich Low_complexity Low_complexity 1 21 0 206 95 24 0 chr1 222325313 222325355 -59868309 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1515 183 0 25 chr1 222325358 222325643 -59868021 - AluJo SINE Alu -30 282 5 22 0 0 0 chr1 222325679 222325701 -59867963 + AT_rich Low_complexity Low_complexity 1 22 0 239 203 31 23 chr1 222326185 222326313 -59867351 + (TA)n Simple_repeat Simple_repeat 2 130 0 25 0 0 0 chr1 222326664 222326689 -59866975 + AT_rich Low_complexity Low_complexity 1 25 0 715 194 0 88 chr1 222326689 222326849 -59866815 - FRAM SINE Alu -30 146 1 366 259 49 52 chr1 222327156 222327353 -59866311 - MIR3 SINE MIR -63 145 1 28 0 0 0 chr1 222328660 222328688 -59864976 + GC_rich Low_complexity Low_complexity 1 28 0 305 231 82 146 chr1 222328767 222329061 -59864603 + L1M2 LINE L1 512 786 -6063 24 32 0 0 chr1 222332242 222332273 -59861391 + AT_rich Low_complexity Low_complexity 1 31 0 333 202 213 0 chr1 222333304 222333398 -59860266 + L2 LINE L2 3200 3313 0 723 313 84 32 chr1 222333550 222334272 -59859392 + L2 LINE L2 2552 3313 0 22 0 0 0 chr1 222334718 222334740 -59858924 + AT_rich Low_complexity Low_complexity 1 22 0 209 225 23 47 chr1 222337840 222337872 -59855792 + (TATAA)n Simple_repeat Simple_repeat 3 34 -94 186 118 0 0 chr1 222337872 222337906 -59855758 + (TTATA)n Simple_repeat Simple_repeat 5 38 0 209 225 23 47 chr1 222337906 222338002 -59855662 + (TATAA)n Simple_repeat Simple_repeat 34 128 0 2205 94 0 7 chr1 222338014 222338301 -59855363 + AluSx SINE Alu 11 295 -17 216 0 0 0 chr1 222338301 222338325 -59855339 + (TA)n Simple_repeat Simple_repeat 2 25 0 857 191 42 4 chr1 222338325 222338561 -59855103 - MER33 DNA MER1_type -29 295 51 425 295 121 0 chr1 222339114 222339280 -59854384 + MIR3 SINE MIR 5 190 -18 471 273 72 72 chr1 222339550 222339759 -59853905 - L2 LINE L2 -7 3306 3098 187 284 68 40 chr1 222340249 222340323 -59853341 + MER5A DNA MER1_type 42 117 -72 5068 116 11 38 chr1 222340669 222341554 -59852110 - Tigger4(Zombi) DNA MER2_type 0 2731 1871 792 193 0 0 chr1 222341548 222341693 -59851971 - Tigger4(Zombi) DNA MER2_type -2585 146 2 * 272 266 28 70 chr1 222341956 222342099 -59851565 + L2 LINE L2 2842 2978 -294 2398 82 0 0 chr1 222342362 222342668 -59850996 - AluY SINE Alu -5 306 1 329 265 68 0 chr1 222342709 222342841 -59850823 + Charlie4a DNA MER1_type 2 142 -366 1944 124 0 57 chr1 222342841 222343220 -59850444 + AluSx SINE Alu 1 361 0 263 226 219 18 chr1 222343220 222343384 -59850280 + Charlie4a DNA MER1_type 144 340 -168 3574 175 24 17 chr1 222343385 222344135 -59849529 - L1MD1 LINE L1 0 6636 5882 995 218 88 7 chr1 222344137 222344445 -59849219 - L1MD1 LINE L1 -793 5747 5415 * 3222 233 67 23 chr1 222344422 222345746 -59847918 - L1MD1 LINE L1 -4815 1725 15 499 171 122 0 chr1 222345756 222345879 -59847785 + Charlie4a DNA MER1_type 349 486 -22 352 359 31 8 chr1 222346447 222346575 -59847089 + L2 LINE L2 3142 3272 0 21 36 0 0 chr1 222348006 222348034 -59845630 + AT_rich Low_complexity Low_complexity 1 28 0 11703 79 1 0 chr1 222348178 222350569 -59843095 + L1PA7 LINE L1 3756 6162 0 507 95 0 0 chr1 222350915 222350989 -59842675 + (GGGA)n Simple_repeat Simple_repeat 3 76 0 349 361 103 5 chr1 222351205 222351399 -59842265 + L3 LINE CR1 882 1094 -483 721 299 61 13 chr1 222351763 222352138 -59841526 + MLT1L LTR MaLR 223 615 0 632 264 7 0 chr1 222352377 222352525 -59841139 + MIR SINE MIR 52 200 -62 604 274 126 32 chr1 222352527 222352837 -59840827 - MLT1J LTR MaLR 0 511 173 366 200 63 0 chr1 222352859 222352954 -59840710 + LTR30 LTR ERV1 527 627 -95 2390 98 13 0 chr1 222353362 222353667 -59839997 + AluSg SINE Alu 1 309 -1 407 289 10 10 chr1 222353717 222353821 -59839843 + MIR SINE MIR 15 118 -144 2292 124 0 0 chr1 222353969 222354276 -59839388 + AluSx SINE Alu 1 307 -5 241 246 43 14 chr1 222354737 222354806 -59838858 + GA-rich Low_complexity Low_complexity 5 75 0 1292 123 0 0 chr1 222356890 222357061 -59836603 + AluSg/x SINE Alu 128 298 -14 2576 50 0 0 chr1 222357388 222357686 -59835978 - AluY SINE Alu -13 298 1 717 300 109 23 chr1 222357697 222358047 -59835617 + LTR16C LTR ERVL 112 491 0 265 310 101 39 chr1 222358116 222358245 -59835419 + L2 LINE L2 3136 3272 0 431 140 0 75 chr1 222358573 222358666 -59834998 - MER5A DNA MER1_type -83 106 21 399 283 60 18 chr1 222358676 222358842 -59834822 + MIR SINE MIR 90 262 0 4690 140 11 25 chr1 222358990 222359826 -59833838 - MER4D LTR ERV1 0 903 80 567 111 0 0 chr1 222359826 222359932 -59833732 - AluSg/x SINE Alu 0 305 200 541 62 0 113 chr1 222359933 222360030 -59833634 - MER4D LTR ERV1 -786 86 1 393 306 191 0 chr1 222360168 222360367 -59833297 + MIR SINE MIR 20 256 -6 1147 46 0 13 chr1 222360732 222360883 -59832781 + L1PA5 LINE L1 6001 6149 -5 29 0 0 0 chr1 222360883 222360912 -59832752 + AT_rich Low_complexity Low_complexity 1 29 0 247 342 45 9 chr1 222361548 222361659 -59832005 - L2 LINE L2 -191 3081 2967 268 231 142 83 chr1 222361918 222362110 -59831554 - MIR3 SINE MIR -59 203 6 536 330 79 23 chr1 222362315 222362657 -59831007 + L3 LINE CR1 794 1154 -423 22 0 0 0 chr1 222363948 222363970 -59829694 + AT_rich Low_complexity Low_complexity 1 22 0 1960 145 3 0 chr1 222364242 222364524 -59829140 - AluJb SINE Alu -11 301 19 212 347 51 31 chr1 222365358 222365456 -59828208 - L2 LINE L2 -49 3223 3124 180 0 0 0 chr1 222365863 222365883 -59827781 + (TG)n Simple_repeat Simple_repeat 2 21 0 2103 91 7 44 chr1 222366090 222366411 -59827253 - AluSx SINE Alu 0 310 1 25 0 0 0 chr1 222366685 222366710 -59826954 + AT_rich Low_complexity Low_complexity 1 25 0 3053 279 98 40 chr1 222367601 222369304 -59824360 - L2 LINE L2 0 3313 1515 332 281 34 0 chr1 222369361 222369450 -59824214 - MIR SINE MIR -14 248 157 286 256 12 12 chr1 222369472 222369554 -59824110 - L2 LINE L2 0 3313 3232 337 277 136 13 chr1 222369637 222369734 -59823930 - MIR SINE MIR -55 207 123 2341 118 0 3 chr1 222369734 222370048 -59823616 + AluSq SINE Alu 1 313 0 337 277 136 13 chr1 222370048 222370105 -59823559 - MIR SINE MIR -139 123 34 363 337 161 6 chr1 222370592 222370945 -59822719 - L2 LINE L2 -1465 1849 1442 1521 119 0 0 chr1 222371059 222371269 -59822395 + AluSg/x SINE Alu 86 295 -17 3365 196 84 26 chr1 222373003 222374011 -59819653 - L1MC4 LINE L1 -5 8037 6971 283 276 141 13 chr1 222374030 222374186 -59819478 + MER102a DNA MER1_type 118 293 -37 2252 95 3 0 chr1 222375136 222375431 -59818233 - AluSx SINE Alu -16 296 1 2241 121 0 0 chr1 222375497 222375804 -59817860 - AluSx SINE Alu -5 307 1 5254 75 48 65 chr1 222376342 222377409 -59816255 + SVA Other Other 1 866 -592 6865 64 6 33 chr1 222377422 222378402 -59815262 + SVA Other Other 433 1386 0 352 250 18 71 chr1 222378402 222378514 -59815150 - MER5B DNA MER1_type -31 147 42 23 86 0 0 chr1 222379042 222379100 -59814564 + AT_rich Low_complexity Low_complexity 1 58 0 1852 156 0 62 chr1 222379146 222379466 -59814198 + AluJb SINE Alu 1 300 -12 228 35 0 0 chr1 222380431 222380460 -59813204 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 40 0 0 0 chr1 222380473 222380513 -59813151 + AT_rich Low_complexity Low_complexity 1 40 0 235 345 198 15 chr1 222380680 222380877 -59812787 + MIR SINE MIR 29 261 -1 2196 81 0 74 chr1 222381158 222381481 -59812183 + AluSq SINE Alu 1 299 -14 366 260 49 8 chr1 222381692 222381815 -59811849 + MIR SINE MIR 135 262 0 308 285 93 40 chr1 222382342 222382493 -59811171 - MIR SINE MIR -65 197 39 2097 150 0 3 chr1 222382675 222382982 -59810682 + AluJb SINE Alu 1 306 -6 189 0 0 0 chr1 222382982 222383003 -59810661 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 351 0 0 0 chr1 222383002 222383041 -59810623 + (GA)n Simple_repeat Simple_repeat 2 40 0 196 30 61 0 chr1 222383043 222383076 -59810588 + (TA)n Simple_repeat Simple_repeat 1 35 0 446 312 50 14 chr1 222383167 222383308 -59810356 + MIR3 SINE MIR 16 161 -47 2338 42 3 3 chr1 222383632 222383942 -59809722 - AluY SINE Alu 0 310 1 326 276 6 105 chr1 222385023 222385204 -59808460 + L2 LINE L2 2181 2343 -971 368 308 77 12 chr1 222385341 222385510 -59808154 + MIR SINE MIR 6 185 -77 2000 114 40 0 chr1 222385513 222385821 -59807843 - AluSx SINE Alu 0 319 1 2319 96 3 0 chr1 222385832 222386135 -59807529 - AluSq SINE Alu -9 304 1 653 323 66 24 chr1 222386327 222386981 -59806683 + L1MC5 LINE L1 7260 7785 -176 1015 173 48 8 chr1 222387055 222387304 -59806360 - MER33 DNA MER1_type -11 313 55 2159 104 7 0 chr1 222388435 222388724 -59804940 - AluSx SINE Alu -17 295 5 482 299 14 14 chr1 222389489 222389633 -59804031 + MER5A DNA MER1_type 1 144 -45 805 130 16 0 chr1 222390165 222390288 -59803376 - FLAM_C SINE Alu -4 129 5 221 207 0 86 chr1 222390868 222390926 -59802738 - L2 LINE L2 -84 3229 3177 256 163 0 0 chr1 222390976 222391019 -59802645 + U2 snRNA snRNA 1 43 -145 1766 187 9 44 chr1 222391157 222391478 -59802186 + AluJo SINE Alu 1 310 -2 960 271 97 29 chr1 222391487 222391557 -59802107 - LTR16C LTR ERVL 0 491 427 2124 139 116 13 chr1 222391557 222391945 -59801719 + MSTA LTR MaLR 1 428 0 960 271 97 29 chr1 222391945 222392288 -59801376 - LTR16C LTR ERVL -64 427 50 249 283 36 42 chr1 222392897 222393063 -59800601 - L1ME LINE L1 -342 5779 5615 235 305 76 38 chr1 222394506 222394611 -59799053 + MIR SINE MIR 19 127 -81 273 310 62 18 chr1 222394629 222394742 -59798922 - L2 LINE L2 -21 3292 3175 417 280 93 20 chr1 222395092 222395242 -59798422 - MIR3 SINE MIR -28 180 20 202 360 70 30 chr1 222395242 222395342 -59798322 - L2 LINE L2 0 3272 3169 855 142 0 176 chr1 222395751 222395984 -59797680 - 7SK RNA RNA 0 193 2 21 0 0 0 chr1 222396490 222396511 -59797153 + AT_rich Low_complexity Low_complexity 1 21 0 352 308 0 19 chr1 222398011 222398118 -59795546 + MIR SINE MIR 33 137 -125 202 294 213 29 chr1 222398679 222398815 -59794849 + MIR3 SINE MIR 15 175 -33 186 324 162 48 chr1 222399241 222399346 -59794318 + MIR3 SINE MIR 15 131 -77 797 235 120 79 chr1 222399380 222399750 -59793914 + MLT1I LTR MaLR 1 389 -20 877 181 32 92 chr1 222399750 222399999 -59793665 + MER106A DNA MER1_type 2 235 -1 797 235 120 79 chr1 222399999 222400019 -59793645 + MLT1I LTR MaLR 389 407 -2 621 235 65 18 chr1 222400091 222400261 -59793403 + L2 LINE L2 3136 3313 0 197 343 41 0 chr1 222400387 222400460 -59793204 - L2 LINE L2 -219 3053 2978 260 286 9 9 chr1 222400841 222400946 -59792718 + Charlie8 DNA MER1_type 368 472 -1945 3765 61 2 0 chr1 222401074 222401551 -59792113 + L1PA8 LINE L1 5687 6164 -8 282 130 62 12 chr1 222401556 222401666 -59791998 + (TA)n Simple_repeat Simple_repeat 2 124 -46 198 0 0 0 chr1 222401666 222401688 -59791976 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 282 130 62 12 chr1 222401688 222401738 -59791926 + (TA)n Simple_repeat Simple_repeat 124 170 0 38 61 0 0 chr1 222401744 222401810 -59791854 + AT_rich Low_complexity Low_complexity 1 66 0 359 158 61 0 chr1 222401810 222401975 -59791689 + (TA)n Simple_repeat Simple_repeat 1 175 0 21 0 0 0 chr1 222401981 222402002 -59791662 + AT_rich Low_complexity Low_complexity 1 21 0 1061 161 5 5 chr1 222402142 222402335 -59791329 + L1PB1 LINE L1 5959 6151 0 359 348 10 93 chr1 222402404 222402584 -59791080 - L2 LINE L2 -474 2840 2693 2307 86 6 49 chr1 222402584 222402908 -59790756 + AluSg SINE Alu 1 310 0 359 348 10 93 chr1 222402908 222403029 -59790635 - L2 LINE L2 -621 2693 2564 2116 137 0 17 chr1 222403315 222403659 -59790005 + MER1B DNA MER1_type 2 339 0 247 197 33 0 chr1 222404473 222404534 -59789130 + L1ME4a LINE L1 6059 6121 0 1428 262 61 87 chr1 222406255 222406415 -59787249 - MER21B LTR ERV1 -150 713 550 6140 55 18 13 chr1 222406415 222407191 -59786473 - LTR17 LTR ERV1 0 780 1 1428 262 61 87 chr1 222407191 222407739 -59785925 - MER21B LTR ERV1 -313 550 24 624 346 189 30 chr1 222408091 222408828 -59784836 - L2 LINE L2 -9 3263 2378 1742 209 27 16 chr1 222408828 222409196 -59784468 - MLT1A2 LTR MaLR -2 372 1 624 346 189 30 chr1 222409196 222409312 -59784352 - L2 LINE L2 -894 2378 2282 820 306 34 0 chr1 222409506 222409741 -59783923 + MIR SINE MIR 20 262 0 638 289 75 25 chr1 222410217 222410456 -59783208 - MIR SINE MIR 0 262 12 260 279 0 0 chr1 222410554 222410615 -59783049 - MIR3 SINE MIR -10 198 138 385 317 138 6 chr1 222410618 222410785 -59782879 - MIR3 SINE MIR -1 207 19 5031 169 105 32 chr1 222410979 222412159 -59781505 - MER52C LTR ERV1 0 1278 13 2188 107 27 0 chr1 222412260 222412560 -59781104 + AluSq SINE Alu 5 312 -1 212 386 89 42 chr1 222412810 222413069 -59780595 + L2 LINE L2 2809 3079 -193 203 339 0 16 chr1 222414453 222414515 -59779149 - MIR SINE MIR -149 113 53 459 281 92 76 chr1 222414547 222414964 -59778700 + L2 LINE L2 2750 3208 -105 258 395 9 0 chr1 222415028 222415142 -59778522 + L2 LINE L2 3197 3311 -2 2750 114 28 23 chr1 222418391 222418820 -59774844 + Tigger2a DNA MER2_type 3 433 -1 24 0 0 0 chr1 222418820 222418844 -59774820 + AT_rich Low_complexity Low_complexity 1 24 0 1665 189 14 27 chr1 222418844 222419168 -59774496 - L1PA16 LINE L1 -16 6150 5823 210 37 0 0 chr1 222419168 222419195 -59774469 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2318 89 0 0 chr1 222419195 222419486 -59774178 - AluSg SINE Alu -19 291 1 1665 189 14 27 chr1 222419486 222419531 -59774133 - L1PA16 LINE L1 -341 5825 5785 4211 163 18 4 chr1 222419591 222420905 -59772759 - L1PA16 LINE L1 -370 5786 4456 345 272 149 0 chr1 222420915 222421029 -59772635 + MIR SINE MIR 48 178 -84 229 238 16 16 chr1 222421093 222421156 -59772508 + MIR SINE MIR 189 251 -11 22 0 0 0 chr1 222421260 222421282 -59772382 + AT_rich Low_complexity Low_complexity 1 22 0 601 290 128 45 chr1 222421417 222421924 -59771740 - MLT1G LTR MaLR 0 590 42 229 200 0 100 chr1 222422009 222422089 -59771575 - L2 LINE L2 -65 3248 3177 266 353 17 25 chr1 222422162 222422281 -59771383 + MIR3 SINE MIR 42 159 -49 27 0 0 0 chr1 222422490 222422517 -59771147 + AT_rich Low_complexity Low_complexity 1 27 0 1358 161 92 0 chr1 222422551 222422824 -59770840 + MER2 DNA MER2_type 48 345 0 22 35 0 0 chr1 222422873 222422902 -59770762 + AT_rich Low_complexity Low_complexity 1 29 0 233 206 65 0 chr1 222422919 222423011 -59770653 + (TA)n Simple_repeat Simple_repeat 1 98 0 202 302 0 35 chr1 222423835 222423921 -59769743 - MIR SINE MIR -121 141 59 1168 236 44 14 chr1 222424074 222424371 -59769293 + MER45C DNA AcHobo 648 953 0 1783 182 83 14 chr1 222424515 222424938 -59768726 + MER66A LTR ERV1 27 478 0 668 246 59 72 chr1 222426451 222426895 -59766769 - LTR16A1 LTR ERVL 0 457 20 2291 154 15 0 chr1 222426957 222427354 -59766310 + MER57A LTR ERV1 1 403 0 1741 156 28 0 chr1 222427461 222427750 -59765914 + AluJb SINE Alu 13 309 -3 226 253 40 0 chr1 222428445 222428520 -59765144 - L1M4 LINE L1 -370 5808 5731 4522 53 47 127 chr1 222429933 222430681 -59762983 + LTR12 LTR ERV1 1 688 0 532 306 117 25 chr1 222430932 222431213 -59762451 - L2 LINE L2 -6 3307 3001 237 330 29 10 chr1 222431206 222431309 -59762355 - L2 LINE L2 -785 2529 2425 * 622 188 34 0 chr1 222431384 222431501 -59762163 + MER58A DNA MER1_type 46 166 0 1425 100 0 5 chr1 222431608 222431828 -59761836 + L1MA6 LINE L1 6082 6300 0 335 296 19 9 chr1 222433365 222433473 -59760191 - MIR3 SINE MIR -33 175 67 396 315 104 0 chr1 222433758 222434009 -59759655 + Charlie8 DNA MER1_type 1 277 -2140 2323 82 7 0 chr1 222434148 222434440 -59759224 + AluSx SINE Alu 2 295 -17 2263 82 3 36 chr1 222436073 222436378 -59757286 - AluSp SINE Alu -18 295 1 206 62 31 0 chr1 222436466 222436498 -59757166 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr1 222436585 222436607 -59757057 + AT_rich Low_complexity Low_complexity 1 22 0 756 276 40 36 chr1 222436617 222436867 -59756797 - MIR SINE MIR -10 252 2 677 147 9 0 chr1 222436926 222437042 -59756622 - MER3 DNA MER1_type -92 117 1 823 149 12 25 chr1 222437430 222437591 -59756073 + L1PA7 LINE L1 5993 6151 -3 262 279 82 33 chr1 222438239 222438361 -59755303 - MIR SINE MIR -107 155 28 838 264 114 35 chr1 222438464 222438919 -59754745 - LTR16C LTR ERVL 0 491 1 492 265 50 35 chr1 222438987 222439385 -59754279 - L1MC5 LINE L1 -393 7415 7256 2493 148 46 2 chr1 222439804 222440236 -59753428 + MER66A LTR ERV1 27 477 -1 240 59 0 0 chr1 222440288 222440322 -59753342 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3003 33 19 0 chr1 222440344 222440708 -59752956 + L1PA5 LINE L1 5784 6154 0 343 211 99 43 chr1 222441012 222441173 -59752491 + LTR33 LTR ERVL 336 505 -16 36 23 0 0 chr1 222441719 222441762 -59751902 + AT_rich Low_complexity Low_complexity 1 43 0 453 25 106 25 chr1 222441766 222441927 -59751737 + (TA)n Simple_repeat Simple_repeat 2 175 0 * 540 80 34 68 chr1 222441896 222442254 -59751410 + (TTATA)n Simple_repeat Simple_repeat 1 345 0 550 43 90 31 chr1 222442257 222442539 -59751125 + (TA)n Simple_repeat Simple_repeat 1 298 0 2024 108 18 4 chr1 222442548 222442825 -59750839 - AluSx SINE Alu -31 281 1 300 27 0 0 chr1 222443308 222443345 -59750319 + (TG)n Simple_repeat Simple_repeat 2 38 0 1886 151 0 23 chr1 222443380 222443679 -59749985 + AluJb SINE Alu 1 292 -20 1979 125 31 3 chr1 222443938 222444227 -59749437 - AluSq SINE Alu -16 297 1 551 179 80 18 chr1 222445241 222445353 -59748311 - FLAM_A SINE Alu -13 129 11 479 198 36 9 chr1 222446111 222446222 -59747442 - Cheshire DNA MER1_type -776 1644 1531 21 36 0 0 chr1 222446256 222446284 -59747380 + AT_rich Low_complexity Low_complexity 1 28 0 1423 194 97 0 chr1 222446344 222446623 -59747041 - AluJo SINE Alu -6 306 1 1198 182 98 13 chr1 222446702 222446826 -59746838 - Cheshire DNA MER1_type -2 2418 2306 1574 101 22 4 chr1 222446826 222447053 -59746611 - AluSp SINE Alu -7 306 76 1198 182 98 13 chr1 222447053 222447235 -59746429 - Cheshire DNA MER1_type -114 2306 2086 367 164 14 0 chr1 222447234 222447307 -59746357 + Cheshire DNA MER1_type 1852 1925 -495 * 2548 189 97 44 chr1 222447346 222448033 -59745631 - Cheshire DNA MER1_type -1213 1207 469 2147 133 7 0 chr1 222448033 222448341 -59745323 - AluSx SINE Alu -2 310 1 2548 189 97 44 chr1 222448341 222448470 -59745194 - Cheshire DNA MER1_type -1951 469 348 310 261 0 0 chr1 222448476 222448545 -59745119 - L2 LINE L2 -3 3269 3201 279 282 0 39 chr1 222448612 222448715 -59744949 - Cheshire DNA MER1_type -2078 342 244 264 281 16 0 chr1 222448831 222448895 -59744769 - Cheshire DNA MER1_type -2355 65 1 2093 149 0 0 chr1 222449088 222449389 -59744275 + AluSx SINE Alu 2 302 -10 5697 94 48 3 chr1 222449624 222450649 -59743015 - L1PA13 LINE L1 -1 6162 5101 218 347 0 0 chr1 222450988 222451060 -59742604 + L2 LINE L2 3214 3285 -28 1771 234 100 36 chr1 222451069 222451649 -59742015 - MLT1E2 LTR MaLR -8 618 2 2031 133 10 0 chr1 222451756 222452049 -59741615 - AluSx SINE Alu -16 296 1 215 216 0 20 chr1 222452801 222452852 -59740812 + GA-rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr1 222452854 222452889 -59740775 + GC_rich Low_complexity Low_complexity 1 35 0 2074 121 3 0 chr1 222453933 222454231 -59739433 - AluSx SINE Alu -13 299 1 180 0 0 0 chr1 222454659 222454679 -59738985 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 194 378 24 0 chr1 222454685 222454767 -59738897 - L2 LINE L2 -257 3015 2932 1695 172 3 36 chr1 222456276 222456584 -59737080 + AluJb SINE Alu 1 298 -14 252 0 0 0 chr1 222456584 222456612 -59737052 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 50 0 0 chr1 222456690 222456730 -59736934 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr1 222457114 222457134 -59736530 + (T)n Simple_repeat Simple_repeat 1 20 0 1990 88 0 0 chr1 222457134 222457383 -59736281 - AluSg SINE Alu -61 249 1 1800 163 3 38 chr1 222457580 222457899 -59735765 - AluJb SINE Alu -4 308 1 1152 158 0 20 chr1 222458229 222458288 -59735376 - AluSq SINE Alu -121 192 133 2213 119 0 0 chr1 222458288 222458590 -59735074 - AluSg SINE Alu -8 302 1 1152 158 0 20 chr1 222458590 222458726 -59734938 - AluSq SINE Alu -180 133 1 1927 128 0 21 chr1 222458782 222459108 -59734556 - AluSx SINE Alu 0 320 1 2562 289 131 43 chr1 222459574 222461354 -59732310 + L2 LINE L2 1383 3295 -18 202 277 131 77 chr1 222461570 222461700 -59731964 - L2 LINE L2 -6 3307 3171 885 152 0 0 chr1 222461776 222461908 -59731756 - FLAM_C SINE Alu -1 132 1 190 312 37 46 chr1 222462020 222462129 -59731535 - MER5A DNA MER1_type -81 108 1 2468 66 0 3 chr1 222462191 222462495 -59731169 - AluY SINE Alu -7 304 2 324 257 90 77 chr1 222462595 222462817 -59730847 + L1MC4a LINE L1 4515 4739 -1407 520 293 77 44 chr1 222463140 222463413 -59730251 + L1MC4a LINE L1 5380 5661 -2147 479 280 32 37 chr1 222463564 222463684 -59729980 + L1MC4a LINE L1 5706 5826 -1982 2423 63 7 3 chr1 222463684 222463983 -59729681 + AluY SINE Alu 1 300 -11 479 280 32 37 chr1 222463983 222464080 -59729584 + L1MC4a LINE L1 5826 5922 -1886 22 0 0 0 chr1 222464632 222464654 -59729010 + AT_rich Low_complexity Low_complexity 1 22 0 354 302 0 21 chr1 222465546 222465642 -59728022 + polypyrimidine Low_complexity Low_complexity 4 97 0 317 331 36 14 chr1 222465642 222465781 -59727883 - L1MC/D LINE L1 -2083 5725 5584 21 36 0 0 chr1 222466562 222466590 -59727074 + AT_rich Low_complexity Low_complexity 1 28 0 2106 118 0 7 chr1 222466783 222467088 -59726576 + AluSx SINE Alu 1 303 -9 180 0 0 0 chr1 222467257 222467277 -59726387 + (TA)n Simple_repeat Simple_repeat 1 20 0 1313 159 0 14 chr1 222467278 222467492 -59726172 - AluJo SINE Alu -91 221 11 192 289 24 24 chr1 222467511 222467594 -59726070 - L3 LINE CR1 -178 1399 1317 646 271 113 22 chr1 222468380 222468609 -59725055 - MIR SINE MIR -1 261 12 2259 166 105 53 chr1 222469656 222470330 -59723334 + Charlie1 DNA MER1_type 2032 2740 -21 382 306 9 9 chr1 222470738 222470846 -59722818 + L2 LINE L2 3158 3265 -7 335 278 15 38 chr1 222470862 222470939 -59722725 - L2 LINE L2 -1226 2088 2014 1331 202 153 11 chr1 222470939 222471086 -59722578 - MSTD LTR MaLR 0 396 271 414 0 0 0 chr1 222471086 222471132 -59722532 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 1331 202 153 11 chr1 222471132 222471331 -59722333 - MSTD LTR MaLR -125 271 1 335 278 15 38 chr1 222471331 222471386 -59722278 - L2 LINE L2 -1300 2014 1959 2127 117 0 0 chr1 222471612 222471903 -59721761 - AluY SINE Alu -20 291 1 2090 86 0 4 chr1 222471974 222472242 -59721422 - AluY SINE Alu -7 304 38 1984 93 11 11 chr1 222473251 222473520 -59720144 - AluSx SINE Alu -4 308 40 293 311 94 9 chr1 222473706 222473812 -59719852 - L2 LINE L2 -9 3263 3149 860 125 81 25 chr1 222473813 222473973 -59719691 - MER1B DNA MER1_type 0 339 171 1455 193 24 0 chr1 222474606 222474855 -59718809 + AluJb SINE Alu 1 255 -57 901 250 13 18 chr1 222475073 222475297 -59718367 + MER58A DNA MER1_type 2 224 0 523 305 77 21 chr1 222475297 222475530 -59718134 + MIR SINE MIR 17 262 0 325 232 116 27 chr1 222476069 222476181 -59717483 + MER58B DNA MER1_type 203 324 -17 1215 170 16 51 chr1 222476289 222476542 -59717122 + AluJb SINE Alu 50 293 -19 25 0 0 0 chr1 222476771 222476796 -59716868 + AT_rich Low_complexity Low_complexity 1 25 0 2140 77 43 7 chr1 222477366 222477666 -59715998 - AluY SINE Alu 0 311 1 22 35 0 0 chr1 222477853 222477882 -59715782 + AT_rich Low_complexity Low_complexity 1 29 0 381 225 62 0 chr1 222478342 222478422 -59715242 - L2 LINE L2 -4 3309 3225 252 260 333 11 chr1 222478431 222478608 -59715056 - L2 LINE L2 -245 3068 2835 1976 145 7 3 chr1 222480093 222480390 -59713274 + AluSx SINE Alu 1 298 -14 386 303 66 16 chr1 222481420 222481542 -59712122 - L2 LINE L2 -2 3270 3143 682 252 41 85 chr1 222482034 222482352 -59711312 + MER102a DNA MER1_type 27 330 0 463 250 73 59 chr1 222482414 222482618 -59711046 + MIR SINE MIR 29 235 -27 29 70 0 0 chr1 222482701 222482758 -59710906 + AT_rich Low_complexity Low_complexity 1 57 0 811 137 0 0 chr1 222483015 222483139 -59710525 + FLAM_C SINE Alu 11 134 -9 1863 136 33 7 chr1 222483986 222484288 -59709376 - AluSx SINE Alu -2 310 1 21 36 0 0 chr1 222484344 222484372 -59709292 + AT_rich Low_complexity Low_complexity 1 28 0 312 146 219 31 chr1 222485242 222485338 -59708326 + MER5C DNA MER1_type 209 322 -2 593 329 98 34 chr1 222485345 222486004 -59707660 + L2 LINE L2 2610 3309 -4 534 323 91 13 chr1 222486143 222486375 -59707289 - MIR SINE MIR -9 253 4 744 146 0 31 chr1 222487437 222487567 -59706097 + FLAM_C SINE Alu 1 126 -7 3250 166 57 65 chr1 222487952 222488676 -59704988 - MER44D DNA MER2_type 0 605 16 22 0 0 0 chr1 222489071 222489093 -59704571 + AT_rich Low_complexity Low_complexity 1 22 0 528 318 166 23 chr1 222490598 222491117 -59702547 - L1MEd LINE L1 -5472 647 55 2271 71 10 7 chr1 222491266 222491563 -59702101 + AluY SINE Alu 1 298 -13 193 296 32 64 chr1 222492153 222492278 -59701386 - MIR3 SINE MIR -48 160 40 256 288 0 0 chr1 222492356 222492422 -59701242 + L1P LINE L1 2849 2914 -3232 1983 135 7 3 chr1 222492423 222492719 -59700945 - AluSx SINE Alu -15 297 1 572 219 59 0 chr1 222492746 222492865 -59700799 - FLAM_C SINE Alu -17 126 1 24 0 0 0 chr1 222493120 222493144 -59700520 + AT_rich Low_complexity Low_complexity 1 24 0 275 262 55 109 chr1 222493225 222493409 -59700255 - MIR SINE MIR -80 182 12 1176 206 47 94 chr1 222493521 222493904 -59699760 - MLT1A1 LTR MaLR 0 365 1 183 355 0 0 chr1 222494114 222494176 -59699488 + MIR SINE MIR 127 188 -74 2216 112 3 0 chr1 222494201 222494505 -59699159 - AluSx SINE Alu -7 305 1 332 294 52 39 chr1 222494505 222494658 -59699006 - L2 LINE L2 -10 3303 3149 6085 209 51 19 chr1 222494801 222496885 -59696779 + L1MB4 LINE L1 3748 5896 -284 686 215 13 19 chr1 222496889 222497047 -59696617 + MLT2B1 LTR ERVL 70 226 -294 322 258 67 0 chr1 222497046 222497135 -59696529 + MLT2B1 LTR ERVL 386 480 -40 * 23 33 0 0 chr1 222497600 222497630 -59696034 + AT_rich Low_complexity Low_complexity 1 30 0 327 265 78 0 chr1 222498031 222498133 -59695531 + L1ME3A LINE L1 6059 6168 -2 1154 151 158 64 chr1 222500325 222500590 -59693074 - AluJb SINE Alu -12 290 1 23 0 0 0 chr1 222500692 222500715 -59692949 + AT_rich Low_complexity Low_complexity 1 23 0 2097 123 7 3 chr1 222500822 222501122 -59692542 - AluSx SINE Alu -11 301 1 572 219 59 0 chr1 222501149 222501268 -59692396 - FLAM_C SINE Alu -17 126 1 24 0 0 0 chr1 222501523 222501547 -59692117 + AT_rich Low_complexity Low_complexity 1 24 0 291 262 55 109 chr1 222501628 222501812 -59691852 - MIR SINE MIR -80 182 12 1202 204 47 94 chr1 222501924 222502307 -59691357 - MLT1A1 LTR MaLR 0 365 1 183 355 0 0 chr1 222502517 222502579 -59691085 + MIR SINE MIR 127 188 -74 2216 112 3 0 chr1 222502604 222502908 -59690756 - AluSx SINE Alu -7 305 1 332 294 52 39 chr1 222502908 222503061 -59690603 - L2 LINE L2 -10 3303 3149 5974 211 52 19 chr1 222503204 222505287 -59688377 + L1MB4 LINE L1 3748 5896 -284 686 215 13 19 chr1 222505291 222505449 -59688215 + MLT2B1 LTR ERVL 70 226 -294 336 245 78 10 chr1 222505448 222505550 -59688114 + MLT2B1 LTR ERVL 386 494 -26 * 265 196 0 0 chr1 222505663 222505709 -59687955 + MLT2C2 LTR ERVL 419 464 0 479 313 42 18 chr1 222506151 222506317 -59687347 + MIR3 SINE MIR 33 202 -6 450 0 0 0 chr1 222506720 222506770 -59686894 + (CA)n Simple_repeat Simple_repeat 2 51 0 1929 181 108 9 chr1 222507464 222507927 -59685737 + LTR22 LTR ERVK 1 509 0 2063 146 0 0 chr1 222508088 222508390 -59685274 - AluSx SINE Alu -10 302 1 22 56 0 0 chr1 222508553 222508589 -59685075 + AT_rich Low_complexity Low_complexity 1 36 0 1907 238 108 45 chr1 222508726 222508864 -59684800 - MER20B DNA MER1_type -34 749 621 2000 115 14 3 chr1 222508864 222509159 -59684505 + AluSx SINE Alu 1 298 -14 1907 238 108 45 chr1 222509159 222509723 -59683941 - MER20B DNA MER1_type -162 621 3 2055 141 0 0 chr1 222511297 222511595 -59682069 + AluSx SINE Alu 1 298 -14 185 230 53 150 chr1 222511920 222512033 -59681631 + L2 LINE L2 3170 3271 -1 194 281 169 22 chr1 222512619 222512708 -59680956 + MIR SINE MIR 41 142 -66 21 0 0 0 chr1 222513271 222513292 -59680372 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 222516240 222516281 -59677383 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 222518686 222518707 -59674957 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 222520636 222520666 -59672998 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr1 222520843 222520890 -59672774 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr1 222522217 222522245 -59671419 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 222522513 222522545 -59671119 + AT_rich Low_complexity Low_complexity 1 32 0 315 268 268 16 chr1 222522853 222523002 -59670662 - MIR SINE MIR -32 230 120 2259 42 29 52 chr1 222523002 222523311 -59670353 - AluY SINE Alu -9 302 1 315 268 268 16 chr1 222523311 222523344 -59670320 - MIR SINE MIR -142 120 2 1889 171 0 34 chr1 222524721 222525077 -59668587 + MER2 DNA MER2_type 1 344 0 343 298 139 60 chr1 222525140 222525522 -59668142 + L2 LINE L2 2458 2869 -445 317 313 102 6 chr1 222525707 222525883 -59667781 - L2 LINE L2 -738 2576 2384 304 353 10 20 chr1 222526071 222526173 -59667491 - L2 LINE L2 -4 3268 3168 268 382 36 12 chr1 222526233 222526398 -59667266 - L2 LINE L2 -221 3051 2883 1415 202 102 18 chr1 222526452 222526902 -59666762 + Charlie4a DNA MER1_type 16 503 -5 253 326 89 19 chr1 222526908 222527178 -59666486 + L1MC4 LINE L1 7613 7901 -141 180 0 0 0 chr1 222528533 222528553 -59665111 + (TTGGGG)n Simple_repeat Simple_repeat 5 24 0 264 122 0 0 chr1 222529793 222529834 -59663830 + FLAM SINE Alu 83 123 -10 1067 299 43 66 chr1 222530001 222530607 -59663057 - MER110-int LTR ERV1 -1685 2962 2371 4347 234 29 4 chr1 222530754 222532163 -59661501 - L1MCa LINE L1 -2661 3765 2393 267 31 0 0 chr1 222532163 222532195 -59661469 + (TG)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr1 222532194 222532218 -59661446 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 4347 234 29 4 chr1 222532195 222532218 -59661446 - L1MCa LINE L1 -4033 2393 2372 1557 219 0 0 chr1 222532218 222532496 -59661168 - AluJo SINE Alu -34 278 1 4347 234 29 4 chr1 222532496 222532539 -59661125 - L1MCa LINE L1 -4054 2372 2277 2041 123 3 7 chr1 222532541 222532976 -59660688 - AluSx SINE Alu 0 434 1 6287 173 42 22 chr1 222532993 222533116 -59660548 - L1MCa LINE L1 -5106 1320 1201 2410 65 0 19 chr1 222533116 222533426 -59660238 - AluY SINE Alu -7 304 1 6287 173 42 22 chr1 222533426 222534556 -59659108 - L1MCa LINE L1 -5225 1201 42 27 0 0 0 chr1 222534608 222534635 -59659029 + AT_rich Low_complexity Low_complexity 1 27 0 1866 120 65 9 chr1 222536624 222536949 -59656715 + MER61A LTR ERV1 1 343 0 2234 85 14 0 chr1 222537066 222537359 -59656305 + AluSc SINE Alu 1 297 -12 1785 176 0 7 chr1 222537367 222537668 -59655996 + AluJo SINE Alu 1 299 -13 665 250 73 15 chr1 222537679 222537883 -59655781 + LTR40b LTR ERVL 245 460 -2 595 221 87 67 chr1 222537884 222538017 -59655647 - MER58C DNA MER1_type -2205 215 75 1795 171 7 0 chr1 222538017 222538309 -59655355 + AluJo SINE Alu 3 296 -16 595 221 87 67 chr1 222538309 222538383 -59655281 - MER58C DNA MER1_type -2345 75 4 628 297 29 21 chr1 222538390 222538629 -59655035 - MER90 LTR ERV1 -31 583 343 478 235 47 53 chr1 222538630 222538800 -59654864 - MER58C DNA MER1_type -1 214 46 239 184 82 0 chr1 222538916 222538965 -59654699 + L2 LINE L2 3261 3313 0 452 145 26 0 chr1 222539003 222539079 -59654585 + MER89 LTR ERV1 1 78 -481 1039 165 176 29 chr1 222539110 222539231 -59654433 - MER90 LTR ERV1 -262 313 211 1812 151 41 0 chr1 222539231 222539523 -59654141 - AluJo SINE Alu -8 304 1 1039 165 176 29 chr1 222539523 222539673 -59653991 - MER90 LTR ERV1 -364 211 2 1119 182 77 149 chr1 222540024 222540468 -59653196 - MLT2D LTR ERVL 0 414 3 261 0 0 0 chr1 222540480 222540509 -59653155 + (T)n Simple_repeat Simple_repeat 1 29 0 220 122 98 0 chr1 222541175 222541216 -59652448 + L2 LINE L2 3261 3305 -8 346 167 0 0 chr1 222541258 222541318 -59652346 + MER89 LTR ERV1 1 60 -499 409 192 13 0 chr1 222541370 222541448 -59652216 + MER89 LTR ERV1 301 379 -180 2252 95 0 14 chr1 222541448 222541744 -59651920 - AluSg SINE Alu -16 294 3 1456 129 6 138 chr1 222541758 222541795 -59651869 - L1MA9 LINE L1 -48 6264 6224 1602 171 180 0 chr1 222541795 222542157 -59651507 - MSTC LTR MaLR 0 428 2 1456 129 6 138 chr1 222542157 222542256 -59651408 - L1MA9 LINE L1 -88 6224 6114 2272 112 7 0 chr1 222542256 222542560 -59651104 - AluSx SINE Alu -6 306 1 1456 129 6 138 chr1 222542560 222542778 -59650886 - L1MA9 LINE L1 -198 6114 5956 24 32 0 0 chr1 222542871 222542902 -59650762 + AT_rich Low_complexity Low_complexity 1 31 0 2067 113 7 3 chr1 222543189 222543491 -59650173 - AluSp SINE Alu -3 310 8 373 258 61 128 chr1 222544449 222544544 -59649120 - L1M2 LINE L1 -5527 1322 1222 198 103 0 0 chr1 222544544 222544573 -59649091 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 373 258 61 128 chr1 222544573 222544950 -59648714 - L1M2 LINE L1 -5627 1222 687 457 265 32 32 chr1 222545029 222545218 -59648446 - MER53 DNA DNA 0 189 1 226 160 40 107 chr1 222545625 222545700 -59647964 + L2 LINE L2 3227 3296 -17 1165 85 69 32 chr1 222546393 222546582 -59647082 - Tigger7 DNA MER2_type -5 2482 2287 * 3377 148 76 68 chr1 222546581 222547292 -59646372 - Tigger7 DNA MER2_type -1770 717 1 2074 131 0 3 chr1 222547379 222547670 -59645994 + AluSx SINE Alu 1 290 -22 474 205 63 31 chr1 222548243 222548370 -59645294 - MIR SINE MIR -10 252 122 2183 126 3 0 chr1 222549529 222549839 -59643825 - AluSx SINE Alu -1 311 1 1635 176 44 0 chr1 222550401 222550701 -59642963 + AluJb SINE Alu 1 312 0 296 340 19 19 chr1 222550856 222550962 -59642702 + MER5B DNA MER1_type 3 108 -70 2131 94 28 0 chr1 222551181 222551467 -59642197 + AluSx SINE Alu 1 294 -18 1576 144 83 11 chr1 222551481 222551773 -59641891 - AluSx SINE Alu 0 311 1 932 244 26 9 chr1 222551781 222552011 -59641653 + MIR SINE MIR 3 236 -26 649 271 113 22 chr1 222552981 222553210 -59640454 + MIR SINE MIR 12 261 -1 195 289 24 24 chr1 222553996 222554079 -59639585 + L3 LINE CR1 1317 1399 -178 1305 159 0 14 chr1 222554098 222554312 -59639352 + AluJo SINE Alu 11 221 -91 180 0 0 0 chr1 222554313 222554333 -59639331 + (TA)n Simple_repeat Simple_repeat 1 20 0 2273 96 0 3 chr1 222554502 222554804 -59638860 - AluSg SINE Alu -9 301 1 1871 143 7 10 chr1 222555639 222555932 -59637732 - AluSx SINE Alu -20 292 1 368 350 74 21 chr1 222556345 222556628 -59637036 + L1MEd LINE L1 34 331 -5788 382 297 71 26 chr1 222556713 222556868 -59636796 + MIR SINE MIR 74 235 -27 1586 163 0 86 chr1 222557117 222557455 -59636209 - AluJo SINE Alu -3 309 1 2393 90 0 0 chr1 222559928 222560229 -59633435 + AluSc SINE Alu 1 301 -8 1342 172 62 58 chr1 222561720 222562011 -59631653 + AluJb SINE Alu 1 292 -20 213 316 32 42 chr1 222563080 222563175 -59630489 + MIR3 SINE MIR 106 199 -9 33 56 0 0 chr1 222564315 222564369 -59629295 + AT_rich Low_complexity Low_complexity 1 54 0 296 262 199 48 chr1 222565942 222566148 -59627516 - MIR SINE MIR -3 259 23 304 232 207 0 chr1 222566149 222566258 -59627406 + FRAM SINE Alu 66 146 -20 225 0 0 0 chr1 222566263 222566288 -59627376 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 917 191 51 6 chr1 222566301 222566479 -59627185 - MER5A DNA MER1_type -2 187 2 438 216 88 10 chr1 222566511 222566613 -59627051 - MER3 DNA MER1_type -91 118 9 1838 147 52 0 chr1 222566982 222567268 -59626396 + AluJb SINE Alu 1 301 -11 32 43 0 0 chr1 222568214 222568260 -59625404 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 222568410 222568431 -59625233 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr1 222568842 222568868 -59624796 + AT_rich Low_complexity Low_complexity 1 26 0 2398 134 37 7 chr1 222568988 222569420 -59624244 - L1MB4 LINE L1 -1 6179 5735 462 139 65 9 chr1 222569424 222569532 -59624132 + L1M4 LINE L1 4317 4430 -1716 * 5302 187 86 36 chr1 222569531 222569883 -59623781 - L1MB4 LINE L1 -451 5729 5396 2199 105 0 13 chr1 222569883 222570187 -59623477 - AluSq SINE Alu -13 300 1 5302 187 86 36 chr1 222570187 222570645 -59623019 - L1MB4 LINE L1 -784 5396 4963 2138 134 0 3 chr1 222570645 222570950 -59622714 + AluSx SINE Alu 3 306 -6 5302 187 86 36 chr1 222570950 222572028 -59621636 - L1MB4 LINE L1 -1217 4963 3739 728 128 45 30 chr1 222572185 222572318 -59621346 + MSTA LTR MaLR 1 135 -293 2314 102 12 84 chr1 222572331 222572735 -59620929 + THE1C LTR MaLR 1 375 0 27 49 0 0 chr1 222573870 222573911 -59619753 + AT_rich Low_complexity Low_complexity 1 41 0 239 114 23 0 chr1 222574560 222574604 -59619060 + (TTATA)n Simple_repeat Simple_repeat 4 48 0 299 264 207 25 chr1 222574792 222574913 -59618751 + MIR3 SINE MIR 15 157 -51 1591 166 60 0 chr1 222574971 222576439 -59617225 + AluSx SINE Alu 1 281 -31 7562 22 6 0 chr1 222575087 222576291 -59617373 + L1PA4 LINE L1 4943 6151 -4 3606 37 9 0 chr1 222576291 222576465 -59617199 + L1P LINE L1 4943 6324 -743 341 171 133 57 chr1 222576573 222576678 -59616986 - Charlie8 DNA MER1_type -2272 145 33 224 363 88 18 chr1 222577148 222577319 -59616345 - MIR3 SINE MIR -9 199 17 340 305 55 51 chr1 222577394 222577630 -59616034 + L1M4 LINE L1 4996 5232 -914 317 179 13 90 chr1 222577666 222577728 -59615936 + L2 LINE L2 3242 3300 -13 2138 123 0 0 chr1 222577728 222578042 -59615622 + AluSq SINE Alu 1 314 0 317 179 13 90 chr1 222578042 222578056 -59615608 + L2 LINE L2 3300 3313 0 555 153 34 17 chr1 222578126 222578303 -59615361 + (TA)n Simple_repeat Simple_repeat 1 180 0 342 162 145 34 chr1 222578475 222578592 -59615072 + L1MC/D LINE L1 5682 5811 -1997 1936 150 49 15 chr1 222578737 222579063 -59614601 + MER1B DNA MER1_type 1 337 0 370 254 164 22 chr1 222581509 222581643 -59612021 + MLT1L LTR MaLR 5 157 -458 591 206 6 103 chr1 222581643 222581808 -59611856 - MER5A DNA MER1_type -2 187 39 985 246 128 54 chr1 222581809 222582232 -59611432 + MLT1L LTR MaLR 142 595 -20 189 243 0 0 chr1 222582463 222582500 -59611164 - MIR SINE MIR -6 256 220 2450 55 13 13 chr1 222582547 222582858 -59610806 + AluY SINE Alu 1 311 0 494 313 159 31 chr1 222583331 222583878 -59609786 - L2 LINE L2 -1161 2153 1537 1139 253 63 72 chr1 222585585 222586028 -59607636 + MER21B LTR ERV1 20 458 -405 938 267 56 51 chr1 222586037 222586412 -59607252 + MER21B LTR ERV1 378 754 -109 4743 151 29 45 chr1 222586423 222587528 -59606136 + L1MB7 LINE L1 5100 6184 0 2355 74 0 3 chr1 222588032 222588329 -59605335 - AluSg SINE Alu -14 296 1 409 218 179 6 chr1 222588787 222588943 -59604721 - Charlie8 DNA MER1_type -2151 266 84 249 228 18 0 chr1 222591050 222591107 -59602557 + L2 LINE L2 3164 3221 -51 208 339 0 0 chr1 222591725 222591787 -59601877 - L2 LINE L2 -6 3266 3205 2293 72 7 0 chr1 222591788 222592079 -59601585 - AluSg SINE Alu -13 297 5 278 274 193 15 chr1 222592788 222592923 -59600741 - L2 LINE L2 -831 2483 2325 2802 230 53 6 chr1 222593611 222594428 -59599236 + L1M4 LINE L1 3086 3940 -2206 1636 246 56 16 chr1 222594428 222594927 -59598737 - LTR40a LTR ERVL 0 519 1 322 151 14 68 chr1 222594955 222595028 -59598636 - HERVL40 LTR ERVL -57 5473 5405 265 293 67 0 chr1 222595046 222595121 -59598543 - HERVL68 LTR ERVL -175 2862 2783 443 242 96 118 chr1 222595344 222595666 -59597998 - HERVL68 LTR ERVL -350 2687 2373 235 343 63 14 chr1 222596091 222596234 -59597430 + L2 LINE L2 3146 3295 -18 22 0 0 0 chr1 222596263 222596285 -59597379 + AT_rich Low_complexity Low_complexity 1 22 0 240 323 52 52 chr1 222596330 222596522 -59597142 - MIR SINE MIR -70 192 1 209 262 49 0 chr1 222597139 222597200 -59596464 + MIR SINE MIR 20 83 -179 341 313 279 0 chr1 222597262 222597463 -59596201 - MIR SINE MIR 0 262 6 1061 174 17 65 chr1 222597481 222597711 -59595953 - MER20 DNA MER1_type 0 219 1 266 227 171 0 chr1 222598393 222598481 -59595183 - MIR SINE MIR -71 191 89 189 0 0 0 chr1 222598534 222598555 -59595109 + (T)n Simple_repeat Simple_repeat 1 21 0 798 176 0 0 chr1 222599111 222599236 -59594428 + FLAM_A SINE Alu 1 125 -8 1919 145 6 41 chr1 222599263 222599581 -59594083 - AluSx SINE Alu -5 307 1 4294 215 107 37 chr1 222600419 222600528 -59593136 - Charlie1a DNA MER1_type -1341 1420 1320 1630 143 6 65 chr1 222600528 222600604 -59593060 + AluJo SINE Alu 2 81 -231 2129 111 17 7 chr1 222600604 222600901 -59592763 - AluSx SINE Alu -12 300 1 1630 143 6 65 chr1 222600901 222601145 -59592519 + AluJo SINE Alu 81 303 -9 4294 215 107 37 chr1 222601145 222602354 -59591310 - Charlie1a DNA MER1_type -1441 1320 10 350 303 22 0 chr1 222602753 222602842 -59590822 - L2 LINE L2 0 3272 3182 195 42 0 0 chr1 222602854 222602878 -59590786 + (TAA)n Simple_repeat Simple_repeat 3 26 0 553 288 132 36 chr1 222602880 222603099 -59590565 - MIR SINE MIR 0 262 23 248 208 56 0 chr1 222603280 222603405 -59590259 + (TA)n Simple_repeat Simple_repeat 1 132 0 631 245 8 2 chr1 222603451 222603600 -59590064 - MIR SINE MIR -60 148 3 1904 162 7 0 chr1 222603701 222603998 -59589666 + AluJo SINE Alu 1 299 -13 2352 163 42 2 chr1 222604340 222604750 -59588914 - MSTB LTR MaLR 0 426 1 365 266 109 16 chr1 222605697 222605881 -59587783 - L2 LINE L2 -1 3312 3112 2270 207 77 33 chr1 222605907 222606525 -59587139 - MER77 LTR ERV1 -6 599 41 349 306 112 39 chr1 222606569 222606775 -59586889 - L2 LINE L2 -221 3051 2831 225 0 0 0 chr1 222606855 222606880 -59586784 + (T)n Simple_repeat Simple_repeat 1 25 0 377 244 146 66 chr1 222606888 222607101 -59586563 - MLT1J LTR MaLR -137 374 145 507 333 115 29 chr1 222607196 222607508 -59586156 - L2 LINE L2 -489 2825 2487 1042 272 103 33 chr1 222607859 222607906 -59585758 - L1ME3A LINE L1 -234 5936 5894 1729 161 67 7 chr1 222607906 222608191 -59585473 - AluJb SINE Alu -10 302 1 1042 272 103 33 chr1 222608191 222608743 -59584921 - L1ME3A LINE L1 -276 5894 5295 13207 185 36 33 chr1 222608750 222610613 -59583051 - L1MA4 LINE L1 -8 7711 5855 1879 140 3 30 chr1 222610613 222610913 -59582751 - AluSx SINE Alu -20 292 1 13207 185 36 33 chr1 222610913 222611032 -59582632 - L1MA4 LINE L1 -1864 5855 5738 1805 155 32 3 chr1 222611032 222611316 -59582348 - AluJo SINE Alu -18 294 3 13207 185 36 33 chr1 222611316 222611560 -59582104 - L1MA4 LINE L1 -1981 5738 5496 2535 47 3 0 chr1 222611560 222611857 -59581807 - AluY SINE Alu -13 298 1 13207 185 36 33 chr1 222611857 222612128 -59581536 - L1MA4 LINE L1 -2223 5496 5227 786 9 19 47 chr1 222612128 222612234 -59581430 - L1PA5 LINE L1 0 6154 6052 13207 185 36 33 chr1 222612234 222614769 -59578895 - L1MA4 LINE L1 -2492 5227 2659 1503 267 97 30 chr1 222614749 222615780 -59577884 - L1ME3A LINE L1 -1763 4383 3284 * 26 30 0 0 chr1 222616480 222616513 -59577151 + AT_rich Low_complexity Low_complexity 1 33 0 6900 59 2 0 chr1 222616514 222617773 -59575891 - L1PA7 LINE L1 -15 6139 4873 495 254 64 0 chr1 222618257 222618367 -59575297 + L2 LINE L2 3156 3272 0 800 183 41 12 chr1 222619618 222619787 -59573877 + MIR SINE MIR 79 252 -10 23 0 0 0 chr1 222621680 222621703 -59571961 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr1 222621774 222621808 -59571856 + AT_rich Low_complexity Low_complexity 1 34 0 909 133 0 14 chr1 222622048 222622191 -59571473 - FLAM_C SINE Alu -2 141 1 2294 113 0 0 chr1 222622320 222622629 -59571035 - AluSx SINE Alu -3 309 1 3952 201 69 27 chr1 222622691 222624282 -59569382 - L1MD1 LINE L1 0 6636 4984 2396 236 56 66 chr1 222624256 222625112 -59568552 - L1MD1 LINE L1 -5509 1031 55 * 61 37 0 0 chr1 222625402 222625484 -59568180 + AT_rich Low_complexity Low_complexity 1 82 0 811 140 7 35 chr1 222625768 222625911 -59567753 - FRAM SINE Alu -10 166 28 775 284 70 4 chr1 222626282 222626511 -59567153 + MIR SINE MIR 11 254 -8 235 231 28 56 chr1 222627166 222627274 -59566390 - L1MC5 LINE L1 -900 7061 6957 2028 104 4 22 chr1 222627349 222627627 -59566037 - AluSx SINE Alu -12 300 28 400 229 18 9 chr1 222628311 222628420 -59565244 - LTR37A LTR ERV1 -316 110 1 418 259 26 37 chr1 222628426 222628615 -59565049 - MER31-int LTR ERV1 -692 4244 4058 436 234 227 7 chr1 222629509 222629663 -59564001 - MER5A DNA MER1_type 0 189 2 289 344 49 16 chr1 222630632 222630754 -59562910 - L2 LINE L2 -6 3266 3141 22 0 0 0 chr1 222631591 222631613 -59562051 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 222632036 222632067 -59561597 + AT_rich Low_complexity Low_complexity 1 31 0 394 239 130 7 chr1 222632113 222632251 -59561413 + MIR SINE MIR 68 222 -40 25 0 0 0 chr1 222632264 222632289 -59561375 + AT_rich Low_complexity Low_complexity 1 25 0 312 310 283 0 chr1 222632814 222632959 -59560705 + MER5A DNA MER1_type 4 189 0 264 296 45 45 chr1 222633002 222633134 -59560530 + MIR SINE MIR 75 206 -56 23 33 0 0 chr1 222633357 222633387 -59560277 + AT_rich Low_complexity Low_complexity 1 30 0 1196 219 62 26 chr1 222635190 222635579 -59558085 + L1M4 LINE L1 4755 5157 -989 281 302 144 0 chr1 222637034 222637173 -59556491 - Tigger8 DNA MER2_type -190 476 318 294 306 272 5 chr1 222637215 222637421 -59556243 - L2 LINE L2 -50 3263 3003 1301 219 56 10 chr1 222637859 222638147 -59555517 + AluJo SINE Alu 1 301 -11 254 203 135 0 chr1 222638494 222638568 -59555096 - MIR SINE MIR -43 219 136 506 211 149 62 chr1 222638639 222638800 -59554864 + MER5A DNA MER1_type 6 180 -9 279 241 120 37 chr1 222638996 222639008 -59554656 - MIR SINE MIR -32 230 220 2165 104 7 0 chr1 222639008 222639296 -59554368 - AluSp SINE Alu -22 291 2 279 241 120 37 chr1 222639296 222639391 -59554273 - MIR SINE MIR -42 220 114 364 217 56 4 chr1 222639492 222639589 -59554075 - MIR SINE MIR -63 145 35 300 210 40 30 chr1 222639589 222639674 -59553990 + CT-rich Low_complexity Low_complexity 3 91 -12 2335 102 13 0 chr1 222639674 222639979 -59553685 - AluSx SINE Alu -3 309 1 300 210 40 30 chr1 222639979 222639993 -59553671 + CT-rich Low_complexity Low_complexity 91 103 0 1088 141 22 0 chr1 222640673 222640858 -59552806 + Tigger1 DNA MER2_type 528 716 -1702 2305 92 3 0 chr1 222641028 222641321 -59552343 + AluSg1 SINE Alu 1 294 -15 252 225 28 28 chr1 222641905 222641976 -59551688 + MIR SINE MIR 23 93 -115 468 35 0 0 chr1 222642131 222642189 -59551475 + (TC)n Simple_repeat Simple_repeat 2 59 0 220 305 61 0 chr1 222642756 222642838 -59550826 - L2 LINE L2 0 3272 3186 3807 132 97 3 chr1 222643030 222643688 -59549976 + Tigger1 DNA MER2_type 4 723 -1695 5685 117 6 4 chr1 222643698 222644909 -59548755 - L1PA14 LINE L1 0 6161 4926 4611 169 12 5 chr1 222644910 222645807 -59547857 - L1PA14 LINE L1 -1701 4445 3542 8529 131 16 5 chr1 222645808 222647224 -59546440 + Tigger1 DNA MER2_type 987 2418 0 2205 98 7 0 chr1 222647317 222647604 -59546060 + AluSc SINE Alu 1 289 -20 5020 159 45 26 chr1 222647727 222648549 -59545115 - L1PB4 LINE L1 -13 6143 5338 2383 87 0 7 chr1 222648549 222648859 -59544805 - AluSp SINE Alu -5 308 1 5020 159 45 26 chr1 222648859 222650039 -59543625 - L1PB4 LINE L1 -818 5338 3994 6376 85 18 0 chr1 222650048 222650419 -59543245 - L1PA8 LINE L1 -10 6162 5799 243 0 0 0 chr1 222650419 222650446 -59543218 + (TATATG)n Simple_repeat Simple_repeat 5 31 0 6376 85 18 0 chr1 222650446 222651050 -59542614 - L1PA8 LINE L1 -373 5799 5172 639 272 0 6 chr1 222651052 222651225 -59542439 - L1PBb LINE L1 -5328 1535 1364 784 307 42 25 chr1 222651235 222652006 -59541658 - L1PA15-16 LINE L1 -5286 1576 926 300 342 45 45 chr1 222652536 222652691 -59540973 - L1M2 LINE L1 -6694 155 1 230 272 111 0 chr1 222652879 222652960 -59540704 - MER102b DNA MER1_type -1 340 251 * 915 240 100 24 chr1 222652947 222653410 -59540254 - Charlie8 DNA MER1_type -2141 276 1 299 317 6 6 chr1 222653593 222653757 -59539907 - L1M4 LINE L1 -2309 3837 3674 2056 141 0 3 chr1 222653837 222654134 -59539530 + AluSx SINE Alu 3 298 -14 216 182 0 0 chr1 222654182 222654226 -59539438 + (TG)n Simple_repeat Simple_repeat 1 44 0 383 285 103 18 chr1 222654930 222655095 -59538569 - L1ME LINE L1 -720 5446 5268 487 116 0 0 chr1 222656532 222656601 -59537063 + AluJ/FLAM SINE Alu 32 100 -212 1869 165 0 0 chr1 222656730 222657015 -59536649 - AluSx SINE Alu -25 287 3 1730 153 3 31 chr1 222657109 222657403 -59536261 + AluJo SINE Alu 5 290 -22 2180 118 3 3 chr1 222657925 222658222 -59535442 - AluSx SINE Alu -15 297 1 2081 138 20 3 chr1 222658225 222658523 -59535141 - AluSx SINE Alu -9 303 1 2551 112 28 49 chr1 222658530 222658996 -59534668 - MER41B LTR ERV1 -179 456 1 514 330 121 67 chr1 222659327 222659928 -59533736 - L2 LINE L2 -4 3268 2646 975 288 152 19 chr1 222659952 222660327 -59533337 + L2 LINE L2 97 521 -2793 1574 123 4 4 chr1 222660341 222660592 -59533072 + L1M2 LINE L1 5497 5747 -550 4097 278 111 10 chr1 222660637 222661974 -59531690 + L2 LINE L2 517 1988 -1326 1562 72 5 5 chr1 222661977 222662199 -59531465 - pTR5 LTR ERV1 -2046 392 171 301 235 31 20 chr1 222662201 222662299 -59531365 - LTR30 LTR ERV1 -80 642 544 3900 140 150 33 chr1 222662299 222663295 -59530369 - pTR5 LTR ERV1 -413 2025 751 2184 274 71 66 chr1 222663295 222664621 -59529043 + L2 LINE L2 1981 3312 -1 9525 93 6 12 chr1 222668121 222669491 -59524173 - Charlie3 DNA MER1_type -4 2706 1345 2000 88 73 6 chr1 222669491 222669856 -59523808 + LTR7 LTR ERV1 1 450 0 2281 161 33 22 chr1 222669856 222670310 -59523354 + HERVH LTR ERV1 1 459 -7254 5499 118 26 36 chr1 222670368 222671341 -59522323 + HERVH LTR ERV1 800 2652 -4024 1234 75 0 6 chr1 222671341 222671515 -59522149 + LTR7 LTR ERV1 278 450 0 * 8302 97 16 7 chr1 222671515 222672805 -59520859 - Charlie3 DNA MER1_type -104 2606 1 22 35 0 0 chr1 222673570 222673599 -59520065 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 222673721 222673749 -59519915 + AT_rich Low_complexity Low_complexity 1 28 0 602 252 43 65 chr1 222674001 222674231 -59519433 - MIR SINE MIR -18 244 20 21 36 0 0 chr1 222674750 222674778 -59518886 + AT_rich Low_complexity Low_complexity 1 28 0 553 255 31 47 chr1 222675763 222675955 -59517709 + MIR SINE MIR 74 262 0 194 227 0 0 chr1 222675971 222676015 -59517649 - MER5A DNA MER1_type -80 109 66 2202 197 34 40 chr1 222676445 222676691 -59516973 + L1ME1 LINE L1 5636 5882 -284 1991 135 18 6 chr1 222676691 222677032 -59516632 + L1PB3 LINE L1 5808 6152 -2 2202 197 34 40 chr1 222677032 222677314 -59516350 + L1ME1 LINE L1 5882 6161 -5 381 158 70 23 chr1 222677421 222677592 -59516072 + (TA)n Simple_repeat Simple_repeat 2 180 0 339 255 28 10 chr1 222677816 222677937 -59515727 - L1ME LINE L1 -477 5685 5560 1927 126 33 13 chr1 222677953 222678255 -59515409 - AluSx SINE Alu -4 308 1 248 286 32 0 chr1 222678348 222678411 -59515253 - MER5B DNA MER1_type -35 143 79 1025 241 93 59 chr1 222678442 222678849 -59514815 + L2 LINE L2 2172 2592 -722 307 328 45 8 chr1 222678899 222679033 -59514631 - L1MC/D LINE L1 -2025 5783 5645 797 276 57 107 chr1 222679040 222679190 -59514474 + L2 LINE L2 2606 2762 -551 290 146 0 0 chr1 222679190 222679231 -59514433 - 5S rRNA rRNA -79 42 2 797 276 57 107 chr1 222679231 222679743 -59513921 + L2 LINE L2 2762 3272 -41 207 69 0 0 chr1 222679743 222679772 -59513892 + (TATG)n Simple_repeat Simple_repeat 2 30 0 797 276 57 107 chr1 222679772 222679801 -59513863 + L2 LINE L2 3272 3301 -12 614 292 151 5 chr1 222679780 222679999 -59513665 - MIR SINE MIR -10 252 2 * 204 191 0 24 chr1 222679999 222680038 -59513626 - L3 LINE CR1 -1272 305 268 241 128 0 0 chr1 222680004 222680043 -59513621 + L2 LINE L2 3274 3312 -1 305 305 139 33 chr1 222680787 222680938 -59512726 + MIR SINE MIR 22 188 -74 827 262 101 58 chr1 222681665 222682043 -59511621 + L2 LINE L2 2199 2592 -722 307 328 45 8 chr1 222682093 222682227 -59511437 - L1MC/D LINE L1 -2025 5783 5645 812 284 57 104 chr1 222682234 222682384 -59511280 + L2 LINE L2 2606 2761 -552 290 146 0 0 chr1 222682384 222682425 -59511239 - 5S rRNA rRNA -79 42 2 812 284 57 104 chr1 222682425 222682933 -59510731 + L2 LINE L2 2761 3272 -41 207 69 0 0 chr1 222682933 222682962 -59510702 + (TATG)n Simple_repeat Simple_repeat 2 30 0 812 284 57 104 chr1 222682962 222682991 -59510673 + L2 LINE L2 3272 3301 -12 628 288 151 5 chr1 222682970 222683189 -59510475 - MIR SINE MIR -10 252 2 * 204 191 0 24 chr1 222683189 222683228 -59510436 - L3 LINE CR1 -1272 305 268 241 128 0 0 chr1 222683194 222683233 -59510431 + L2 LINE L2 3274 3312 -1 378 287 133 33 chr1 222683975 222684125 -59509539 + MIR SINE MIR 22 186 -76 460 293 114 63 chr1 222684306 222684623 -59509041 - MLT1J LTR MaLR -12 499 167 325 286 36 18 chr1 222684904 222685016 -59508648 - MLT1J LTR MaLR -334 177 64 304 370 101 25 chr1 222685278 222685686 -59507978 + L2 LINE L2 1872 2310 -1004 261 263 84 62 chr1 222685714 222685893 -59507771 - L1ME3A LINE L1 -15 6155 5973 516 241 62 11 chr1 222686206 222686429 -59507235 - L1MDa LINE L1 -3904 2636 2434 2037 154 28 6 chr1 222686429 222686785 -59506879 + MLT1A1 LTR MaLR 1 364 -1 47 15 0 15 chr1 222687172 222687183 -59506481 + AT_rich Low_complexity Low_complexity 1 11 -53 2461 170 75 2 chr1 222687183 222687676 -59505988 - L1MA9 LINE L1 -9 7263 6735 47 15 0 15 chr1 222687676 222687729 -59505935 + AT_rich Low_complexity Low_complexity 11 64 0 233 119 24 0 chr1 222687748 222687790 -59505874 + (CA)n Simple_repeat Simple_repeat 2 44 0 1110 164 0 0 chr1 222687792 222687969 -59505695 - L1MA9 LINE L1 -513 6738 6562 27 0 0 0 chr1 222687973 222688000 -59505664 + AT_rich Low_complexity Low_complexity 1 27 0 2233 101 0 3 chr1 222688002 222688289 -59505375 - AluSx SINE Alu -26 286 1 786 177 0 0 chr1 222688297 222688421 -59505243 - AluJb SINE Alu -188 124 1 2237 141 31 17 chr1 222688421 222689077 -59504587 - L1MA9 LINE L1 -683 6568 5903 1145 166 0 0 chr1 222689071 222689270 -59504394 - L1MA9 LINE L1 -1512 5594 5396 * 390 179 26 0 chr1 222689272 222689350 -59504314 - L1MA9 LINE L1 -1849 5257 5178 1532 131 146 19 chr1 222689369 222689637 -59504027 + AluSx SINE Alu 1 302 0 680 338 60 19 chr1 222689640 222690004 -59503660 - MER93a LTR ERV1 -4 398 20 3979 189 20 27 chr1 222690024 222690900 -59502764 - L1MA9 LINE L1 -1925 5181 4312 424 163 62 16 chr1 222690902 222691031 -59502633 - L1MA9 LINE L1 -2912 4194 4060 1183 235 8 0 chr1 222691075 222691330 -59502334 - L1MA9 LINE L1 -6712 318 62 268 26 0 0 chr1 222691338 222691377 -59502287 - L1MA3 LINE L1 0 6305 6267 2337 110 3 0 chr1 222691390 222691700 -59501964 - AluSx SINE Alu -1 311 1 370 192 29 0 chr1 222691701 222691775 -59501889 - L1MA9 LINE L1 -6072 965 1 948 90 0 0 chr1 222691845 222691967 -59501697 - THE1C LTR MaLR -1 374 253 2305 48 0 0 chr1 222691967 222692237 -59501427 + AluY SINE Alu 1 270 -41 2025 60 4 0 chr1 222692337 222692627 -59501037 + AluY SINE Alu 38 311 0 1656 123 30 20 chr1 222692627 222692912 -59500752 - THE1C LTR MaLR -71 284 1 315 263 0 26 chr1 222693054 222693130 -59500534 - MER5A DNA MER1_type -5 184 111 216 0 0 0 chr1 222693342 222693366 -59500298 + (T)n Simple_repeat Simple_repeat 1 24 0 384 318 23 15 chr1 222693519 222693651 -59500013 + MIR3 SINE MIR 9 141 -67 1297 151 74 4 chr1 222693753 222694011 -59499653 + L1MA4 LINE L1 6018 6293 -7 27 29 0 0 chr1 222694435 222694469 -59499195 + AT_rich Low_complexity Low_complexity 1 34 0 35 24 0 0 chr1 222694843 222694885 -59498779 + AT_rich Low_complexity Low_complexity 1 42 0 1327 162 21 21 chr1 222694971 222695206 -59498458 - MLT2B2 LTR ERVL -280 235 1 276 319 126 60 chr1 222695488 222695772 -59497892 + L2 LINE L2 2307 2624 -690 2261 89 7 3 chr1 222695772 222696074 -59497590 - AluSp SINE Alu -10 303 1 276 319 126 60 chr1 222696074 222696171 -59497493 + L2 LINE L2 2624 2713 -601 636 160 0 0 chr1 222696180 222696280 -59497384 + MER20 DNA MER1_type 120 219 0 237 359 222 0 chr1 222696286 222696484 -59497180 + L2 LINE L2 3023 3264 -8 2233 108 0 0 chr1 222696656 222696951 -59496713 - AluSg SINE Alu -15 295 1 1748 202 62 38 chr1 222697338 222697789 -59495875 - MLT1C LTR MaLR 0 467 6 2232 83 0 32 chr1 222700295 222700609 -59493055 - AluSg1 SINE Alu -5 304 1 31 44 0 0 chr1 222700720 222700765 -59492899 + AT_rich Low_complexity Low_complexity 1 45 0 247 259 133 44 chr1 222700993 222701128 -59492536 + MLT1L LTR MaLR 221 367 -248 362 317 130 6 chr1 222701553 222701714 -59491950 - MIR SINE MIR -62 200 20 363 340 113 7 chr1 222701793 222701943 -59491721 + MIR3 SINE MIR 42 207 -1 495 295 147 16 chr1 222702982 222703240 -59490424 - MLT1K LTR MaLR -168 420 129 1086 252 35 29 chr1 222703792 222704141 -59489523 - LTR16A LTR ERVL -83 374 1 1287 208 45 31 chr1 222704443 222704731 -59488933 - AluJo SINE Alu -20 292 1 1883 140 39 0 chr1 222705298 222705583 -59488081 - AluJb SINE Alu -16 296 1 32 26 0 0 chr1 222706612 222706651 -59487013 + AT_rich Low_complexity Low_complexity 1 39 0 272 312 11 11 chr1 222706894 222706987 -59486677 - L2 LINE L2 -564 2750 2658 212 285 77 77 chr1 222707033 222707166 -59486498 - L2 LINE L2 -94 3219 3084 1925 138 47 0 chr1 222707166 222707463 -59486201 + AluSq SINE Alu 1 311 -2 212 285 77 77 chr1 222707463 222707536 -59486128 - L2 LINE L2 -228 3085 3013 481 361 84 33 chr1 222707696 222708485 -59485179 - L2 LINE L2 -941 2373 1545 1919 132 32 3 chr1 222709165 222709476 -59484188 + L1PB2 LINE L1 5824 6143 -8 325 158 9 140 chr1 222709556 222709670 -59483994 + L1MB3 LINE L1 5328 5426 -933 1360 184 30 4 chr1 222709699 222709970 -59483694 + L1MB3 LINE L1 5791 6068 -115 366 248 13 32 chr1 222710024 222710181 -59483483 + HAL1 LINE L1 1022 1175 -1332 25 51 0 0 chr1 222710196 222710235 -59483429 + AT_rich Low_complexity Low_complexity 1 39 0 222 312 204 13 chr1 222710345 222710502 -59483162 + MIR SINE MIR 74 260 -2 588 311 48 80 chr1 222711296 222711759 -59481905 - MLT1K LTR MaLR 0 588 141 351 349 92 42 chr1 222712127 222712617 -59481047 - L2 LINE L2 -77 3195 2681 784 253 74 39 chr1 222712640 222712827 -59480837 + MIR SINE MIR 26 224 -38 1599 131 15 18 chr1 222712827 222713101 -59480563 + L1PA16 LINE L1 5894 6166 0 784 253 74 39 chr1 222713101 222713142 -59480522 + MIR SINE MIR 224 262 0 218 239 0 0 chr1 222713143 222713189 -59480475 - L2 LINE L2 -6 3307 3262 510 299 99 32 chr1 222713350 222713506 -59480158 + MIR SINE MIR 26 203 -59 219 114 0 0 chr1 222713506 222713541 -59480123 + (TATG)n Simple_repeat Simple_repeat 2 36 0 510 299 99 32 chr1 222713541 222713605 -59480059 + MIR SINE MIR 203 261 -1 21 57 0 0 chr1 222713976 222714011 -59479653 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr1 222714846 222714888 -59478776 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr1 222715043 222715068 -59478596 + AT_rich Low_complexity Low_complexity 1 25 0 700 148 89 77 chr1 222715392 222715561 -59478103 + L1PB4 LINE L1 5983 6153 -3 1929 147 9 31 chr1 222715902 222716221 -59477443 - AluJb SINE Alu 0 312 1 534 297 113 21 chr1 222717922 222718348 -59475316 + MLT1L LTR MaLR 9 520 -95 222 348 0 0 chr1 222718895 222718964 -59474700 + MIR3 SINE MIR 130 198 -10 189 311 55 140 chr1 222720170 222720591 -59473073 + L2 LINE L2 2875 3259 -13 223 244 0 146 chr1 222720908 222721031 -59472633 - L2 LINE L2 0 3313 3209 279 306 112 65 chr1 222721175 222721407 -59472257 + MIR SINE MIR 20 262 0 1595 186 37 37 chr1 222721787 222722142 -59471522 + MLT1D LTR MaLR 22 376 -129 411 89 0 0 chr1 222722144 222722200 -59471464 + MLT1D LTR MaLR 566 621 -5 2838 147 34 11 chr1 222722215 222722751 -59470913 + L1MA9 LINE L1 5764 6311 -1 338 253 222 23 chr1 222722774 222723031 -59470633 - L2 LINE L2 -1039 2275 1968 22 0 0 0 chr1 222723651 222723673 -59469991 + AT_rich Low_complexity Low_complexity 1 22 0 229 299 30 0 chr1 222724426 222724493 -59469171 + L2 LINE L2 3245 3313 0 263 318 23 0 chr1 222724496 222724625 -59469039 + L2 LINE L2 959 1090 -2224 533 252 167 15 chr1 222724626 222725112 -59468552 - MLT1E3 LTR MaLR 0 624 1 266 188 141 0 chr1 222725887 222725972 -59467692 + L1MC4 LINE L1 6607 6703 -1339 230 315 0 0 chr1 222725893 222725982 -59467682 - L1MC4 LINE L1 -1340 6702 6614 * 180 0 0 0 chr1 222725982 222726002 -59467662 + (TG)n Simple_repeat Simple_repeat 2 21 0 2494 70 0 0 chr1 222726011 222726312 -59467352 - AluY SINE Alu -10 301 1 520 295 66 17 chr1 222728148 222728389 -59465275 + MER46C DNA MER2_type 82 334 -4 3627 116 84 54 chr1 222728719 222729608 -59464056 - MER11A LTR ERVK 0 1266 183 669 335 109 21 chr1 222729615 222730000 -59463664 + L2 LINE L2 2186 2604 -710 312 146 219 31 chr1 222730138 222730234 -59463430 + MER5C DNA MER1_type 209 322 -2 608 326 100 34 chr1 222730241 222730899 -59462765 + L2 LINE L2 2610 3309 -4 534 323 91 13 chr1 222731035 222731267 -59462397 - MIR SINE MIR -9 253 4 252 273 26 13 chr1 222731559 222731636 -59462028 + CT-rich Low_complexity Low_complexity 3 80 0 744 146 0 31 chr1 222732329 222732459 -59461205 + FLAM_C SINE Alu 1 126 -7 3225 167 57 65 chr1 222732844 222733568 -59460096 - MER44D DNA MER2_type 0 605 16 22 0 0 0 chr1 222733963 222733985 -59459679 + AT_rich Low_complexity Low_complexity 1 22 0 528 318 166 23 chr1 222735490 222736009 -59457655 - L1MEd LINE L1 -5472 647 55 2271 71 10 7 chr1 222736158 222736455 -59457209 + AluY SINE Alu 1 298 -13 193 296 32 64 chr1 222737045 222737170 -59456494 - MIR3 SINE MIR -48 160 40 9401 202 35 26 chr1 222737248 222737315 -59456349 + L1PA15 LINE L1 2849 2914 -3251 2011 135 0 0 chr1 222737315 222737612 -59456052 - AluJb SINE Alu -15 297 1 9401 202 35 26 chr1 222737612 222738795 -59454869 + L1PA15 LINE L1 2914 4085 -2080 3389 148 68 57 chr1 222738795 222739571 -59454093 - LTR1 LTR ERV1 0 785 1 9401 202 35 26 chr1 222739571 222741613 -59452051 + L1PA15 LINE L1 4085 6150 -15 2149 86 59 0 chr1 222741880 222742170 -59451494 - AluSg SINE Alu -3 307 1 233 406 57 0 chr1 222742749 222742872 -59450792 + L2 LINE L2 3124 3253 -19 263 200 0 0 chr1 222744152 222744202 -59449462 + L1MC/D LINE L1 5543 5592 -2193 418 332 140 4 chr1 222744202 222744452 -59449212 - L1MEc LINE L1 -4814 1496 1213 326 294 69 75 chr1 222744525 222745137 -59448527 - L1MEc LINE L1 -4975 1144 537 371 312 86 73 chr1 222745265 222745579 -59448085 - L1MEc LINE L1 -5722 397 80 1526 190 64 0 chr1 222745583 222745925 -59447739 - L1MA4 LINE L1 0 6300 5937 312 224 17 40 chr1 222746056 222746410 -59447254 + (CATATA)n Simple_repeat Simple_repeat 1 345 0 5696 150 20 23 chr1 222746616 222746961 -59446703 - L1PB1 LINE L1 -4 6147 5802 252 0 0 0 chr1 222746961 222746989 -59446675 + (TA)n Simple_repeat Simple_repeat 2 29 0 5696 150 20 23 chr1 222746989 222748064 -59445600 - L1PB1 LINE L1 -349 5802 4742 3638 214 85 6 chr1 222748074 222748980 -59444684 - L1PB1 LINE L1 -2033 4113 3136 772 164 0 50 chr1 222749065 222749205 -59444459 + FLAM_C SINE Alu 1 133 0 957 274 25 11 chr1 222749827 222750108 -59443556 + HsTC2c DNA Tc2 3 287 -442 1554 240 144 14 chr1 222750111 222751029 -59442635 + L1ME2 LINE L1 4698 5742 -422 1500 237 49 6 chr1 222751029 222751379 -59442285 + MLT1A1 LTR MaLR 1 365 0 1413 203 116 24 chr1 222751380 222751759 -59441905 + L1ME2 LINE L1 5739 6152 -12 1010 209 183 73 chr1 222751759 222751856 -59441808 + HsTC2c DNA Tc2 274 359 -1539 2058 144 7 0 chr1 222751856 222752162 -59441502 - AluSx SINE Alu -4 308 1 1010 209 183 73 chr1 222752162 222752475 -59441189 + HsTC2c DNA Tc2 359 729 0 231 250 106 39 chr1 222753077 222753181 -59440483 + L2 LINE L2 3192 3302 -11 231 36 0 0 chr1 222754163 222754191 -59439473 + (CA)n Simple_repeat Simple_repeat 2 29 0 2182 92 10 7 chr1 222754338 222754630 -59439034 + AluSq SINE Alu 3 295 -18 702 197 0 0 chr1 222754953 222755075 -59438589 - FLAM_A SINE Alu -11 122 1 21 0 0 0 chr1 222755738 222755759 -59437905 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr1 222755866 222755892 -59437772 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 414 0 0 0 chr1 222755891 222755937 -59437727 + (CA)n Simple_repeat Simple_repeat 1 46 0 330 132 66 0 chr1 222755937 222756073 -59437591 + (TA)n Simple_repeat Simple_repeat 2 146 0 29 0 0 0 chr1 222756612 222756641 -59437023 + AT_rich Low_complexity Low_complexity 1 29 0 550 212 10 0 chr1 222756780 222756879 -59436785 + Charlie1 DNA MER1_type 1 100 -2661 254 209 15 30 chr1 222756949 222757016 -59436648 + CT-rich Low_complexity Low_complexity 1 66 0 468 237 7 72 chr1 222757033 222757172 -59436492 + MIR SINE MIR 123 252 -10 695 129 0 0 chr1 222758328 222758429 -59435235 + AluS SINE Alu 1 101 -212 599 230 130 60 chr1 222758534 222758834 -59434830 + L2 LINE L2 2302 2622 -692 527 92 0 0 chr1 222759004 222759080 -59434584 + Alu SINE Alu 221 296 -15 1797 61 56 0 chr1 222759126 222759357 -59434307 - AluY SINE Alu -14 297 54 1758 201 59 65 chr1 222759536 222760048 -59433616 + LTR22 LTR ERVK 1 509 0 298 327 167 23 chr1 222760366 222760629 -59433035 + L2 LINE L2 1614 1914 -1400 2304 154 21 5 chr1 222760770 222761154 -59432510 - Tigger2a DNA MER2_type -44 390 1 349 307 99 60 chr1 222761212 222761495 -59432169 + L2 LINE L2 2196 2489 -825 1587 88 12 0 chr1 222761786 222762026 -59431638 - L1MA4A LINE L1 -2 6301 6059 460 128 105 23 chr1 222762027 222762113 -59431551 + L1PA10 LINE L1 6075 6167 -1 * 4520 126 52 30 chr1 222762112 222763116 -59430548 - L1MA4A LINE L1 -231 6072 5045 * 6763 184 115 48 chr1 222763110 222764822 -59428842 - L1M2 LINE L1 -5021 1828 3 23 0 0 0 chr1 222764873 222764896 -59428768 + AT_rich Low_complexity Low_complexity 1 23 0 2047 107 43 0 chr1 222765121 222765420 -59428244 - AluSx SINE Alu 0 312 1 348 308 9 9 chr1 222766458 222766565 -59427099 + L2 LINE L2 2686 2792 -522 515 223 27 0 chr1 222766616 222766728 -59426936 + FLAM_A SINE Alu 1 115 -18 21 36 0 0 chr1 222766771 222766799 -59426865 + AT_rich Low_complexity Low_complexity 1 28 0 700 340 126 12 chr1 222766809 222767150 -59426514 + L2 LINE L2 2904 3283 -30 5786 139 44 13 chr1 222767194 222768562 -59425102 - L1MA5A LINE L1 -4 6293 4882 1240 162 0 21 chr1 222768562 222768796 -59424868 + L1 LINE L1 4189 4417 -1729 13668 135 28 23 chr1 222769245 222771647 -59422017 + Tigger1 DNA MER2_type 2 2414 -4 260 256 35 93 chr1 222772241 222772327 -59421337 + MIR3 SINE MIR 13 93 -115 23 0 0 0 chr1 222772449 222772472 -59421192 + AT_rich Low_complexity Low_complexity 1 23 0 365 200 0 15 chr1 222774989 222775054 -59418610 + L2 LINE L2 3209 3272 0 617 260 46 17 chr1 222775332 222775505 -59418159 - MER5B DNA MER1_type 0 178 1 25 0 0 0 chr1 222775678 222775703 -59417961 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr1 222776298 222776327 -59417337 + AT_rich Low_complexity Low_complexity 1 29 0 206 105 26 0 chr1 222777265 222777303 -59416361 + T-rich Low_complexity Low_complexity 2 40 0 2148 121 3 3 chr1 222777311 222777616 -59416048 - AluSx SINE Alu -7 305 1 34 24 0 0 chr1 222779051 222779092 -59414572 + AT_rich Low_complexity Low_complexity 1 41 0 586 304 191 24 chr1 222779113 222779771 -59413893 - L2 LINE L2 -1915 1399 632 1289 257 128 52 chr1 222781991 222782930 -59410734 - L2 LINE L2 -5 3308 2302 2235 240 64 18 chr1 222783358 222784079 -59409585 + L1MB7 LINE L1 3507 4260 -1886 4190 165 19 9 chr1 222784102 222784872 -59408792 + L1MB7 LINE L1 5388 6165 -19 2126 208 27 82 chr1 222784918 222785173 -59408491 - MER90 LTR ERV1 0 614 346 1996 165 0 0 chr1 222785173 222785476 -59408188 - AluSx SINE Alu -9 303 1 2126 208 27 82 chr1 222785476 222785817 -59407847 - MER90 LTR ERV1 -268 346 51 1742 182 68 56 chr1 222785962 222786461 -59407203 - MLT1D LTR MaLR 0 505 1 338 339 26 15 chr1 222786710 222786905 -59406759 - MER117 DNA MER1_type 0 197 1 5162 169 43 6 chr1 222787397 222789277 -59404387 + L1PA16 LINE L1 4213 6157 -9 24 0 0 0 chr1 222789416 222789440 -59404224 + AT_rich Low_complexity Low_complexity 1 24 0 682 301 152 21 chr1 222789831 222790296 -59403368 + L2 LINE L2 2695 3219 -94 204 258 76 15 chr1 222790250 222790316 -59403348 - L2 LINE L2 -620 2694 2625 * 205 219 0 0 chr1 222790307 222790348 -59403316 + MIR SINE MIR 211 251 -11 260 275 81 19 chr1 222790698 222790858 -59402806 - L1ME4a LINE L1 -1 6120 5951 186 133 0 0 chr1 222792184 222792214 -59401450 + (T)n Simple_repeat Simple_repeat 1 30 0 196 348 44 51 chr1 222792360 222792441 -59401223 + L2 LINE L2 3110 3192 -80 2121 105 0 3 chr1 222792441 222792765 -59400899 - AluSp SINE Alu 0 323 1 196 348 44 51 chr1 222792765 222792840 -59400824 + L2 LINE L2 3192 3266 -6 343 249 238 11 chr1 222793053 222793238 -59400426 + MIR SINE MIR 3 229 -33 748 183 0 16 chr1 222794241 222794367 -59399297 - FLAM_A SINE Alu -9 124 1 1644 186 27 7 chr1 222794699 222794995 -59398669 + AluJb SINE Alu 3 304 -8 246 32 0 0 chr1 222795984 222796015 -59397649 + (CAA)n Simple_repeat Simple_repeat 2 32 0 308 264 32 80 chr1 222797636 222797761 -59395903 + MIR SINE MIR 32 150 -112 1853 168 17 20 chr1 222797769 222798114 -59395550 + MER2 DNA MER2_type 1 344 0 447 292 119 59 chr1 222798210 222798522 -59395142 + L2 LINE L2 2846 3187 -126 189 0 0 0 chr1 222798522 222798543 -59395121 + (CA)n Simple_repeat Simple_repeat 2 22 0 447 292 119 59 chr1 222798543 222798617 -59395047 + L2 LINE L2 3187 3255 -58 1982 204 5 10 chr1 222798718 222799124 -59394540 + L1MC1 LINE L1 5930 6333 0 313 323 207 33 chr1 222799304 222799638 -59394026 - L3 LINE CR1 -533 1044 653 345 245 226 13 chr1 222799768 222799927 -59393737 - L3 LINE CR1 -926 651 459 383 216 57 11 chr1 222799979 222800067 -59393597 - L2 LINE L2 -35 3278 3187 2302 95 3 3 chr1 222800098 222800404 -59393260 - AluSc SINE Alu -3 306 1 552 313 49 5 chr1 222800621 222800845 -59392819 + MIR SINE MIR 10 243 -19 355 336 23 30 chr1 222801026 222801157 -59392507 + L2 LINE L2 3138 3267 -5 959 176 40 44 chr1 222801915 222802142 -59391522 + pTR5 LTR ERV1 743 968 -1470 * 1165 95 6 0 chr1 222802131 222802300 -59391364 + pTR5 LTR ERV1 223 392 -2046 805 244 109 5 chr1 222803116 222803317 -59390347 + MER58A DNA MER1_type 3 224 0 225 308 67 19 chr1 222803503 222803607 -59390057 - MIR SINE MIR -44 218 110 1249 195 38 102 chr1 222803623 222804023 -59389641 + MLT1A2 LTR MaLR 1 374 0 1751 226 75 57 chr1 222804911 222805455 -59388209 - L1ME2 LINE L1 -11 6153 5600 276 220 83 83 chr1 222805633 222805742 -59387922 + L2 LINE L2 3164 3272 0 260 243 14 0 chr1 222805863 222805933 -59387731 + (TA)n Simple_repeat Simple_repeat 2 72 0 712 200 21 7 chr1 222806978 222807123 -59386541 - MER58B DNA MER1_type -1 340 194 2224 100 0 7 chr1 222807153 222807442 -59386222 - AluSc SINE Alu -12 297 11 1227 263 77 60 chr1 222807630 222808109 -59385555 + L1MCb LINE L1 3 489 -5556 2208 93 17 0 chr1 222808158 222808449 -59385215 + AluSp SINE Alu 1 296 -17 4559 246 53 26 chr1 222808593 222810597 -59383067 - L1 LINE L1 -3621 3944 1887 2110 208 18 35 chr1 222810671 222811186 -59382478 - L1 LINE L1 -6518 971 466 1098 226 87 16 chr1 222813146 222813455 -59380209 - L1ME2 LINE L1 -9 6155 5825 861 245 120 23 chr1 222813458 222813951 -59379713 - L1ME LINE L1 -4900 1085 531 2403 57 3 0 chr1 222813997 222814295 -59379369 + AluY SINE Alu 1 299 -12 293 288 76 8 chr1 222814576 222814694 -59378970 - L1ME LINE L1 -5617 453 328 245 109 273 0 chr1 222814856 222814911 -59378753 + MADE1 DNA Mariner 1 70 -10 425 296 13 20 chr1 222814952 222815104 -59378560 - L1ME LINE L1 -5908 162 12 406 201 244 24 chr1 222815254 222815418 -59378246 - MER2 DNA MER2_type 0 345 146 915 145 12 36 chr1 222815824 222815990 -59377674 - L1PA16 LINE L1 -7 6159 5998 1924 116 43 0 chr1 222816485 222816761 -59376903 - AluSx SINE Alu -24 288 1 217 427 99 20 chr1 222816885 222817138 -59376526 - L2 LINE L2 0 3272 3000 2060 112 10 7 chr1 222817409 222817703 -59375961 - AluSg SINE Alu -15 295 1 348 96 0 0 chr1 222818744 222818796 -59374868 - L1MB1 LINE L1 -1 6167 6116 5137 160 14 29 chr1 222819026 222819526 -59374138 + L1MA8 LINE L1 4642 5148 -1143 1541 201 0 7 chr1 222819526 222819814 -59373850 + AluJo SINE Alu 1 286 -26 5137 160 14 29 chr1 222819814 222820925 -59372739 + L1MA8 LINE L1 5148 6229 -62 1715 144 5 115 chr1 222820925 222821315 -59372349 - MER7A DNA MER2_type -1 345 1 5137 160 14 29 chr1 222821315 222821356 -59372308 + L1MA8 LINE L1 6229 6269 -22 372 202 135 34 chr1 222821817 222821946 -59371718 + MLT1E LTR MaLR 42 166 -427 253 35 0 0 chr1 222821925 222821954 -59371710 + MLT1E LTR MaLR 119 147 -446 * 2516 152 14 37 chr1 222822016 222822449 -59371215 - LTR3 LTR ERVK -9 423 1 888 241 171 64 chr1 222822500 222822845 -59370819 + MLT1E LTR MaLR 212 593 0 247 218 20 50 chr1 222823050 222823151 -59370513 + L1 LINE L1 3692 3789 -2357 * 2306 182 29 71 chr1 222823149 222823774 -59369890 + L1M4 LINE L1 2575 3171 -2975 2221 70 0 21 chr1 222823774 222824110 -59369554 + AluY SINE Alu 1 330 0 2306 182 29 71 chr1 222824110 222824174 -59369490 + L1M4 LINE L1 3171 3236 -2910 1329 227 102 13 chr1 222825790 222826174 -59367490 + MER47B DNA MER2_type 1 418 0 1536 172 5 137 chr1 222826313 222826714 -59366950 + MER7A DNA MER2_type 1 346 0 10449 25 1 0 chr1 222827065 222829271 -59364393 + L1PA3 LINE L1 3947 6154 -1 1741 215 39 15 chr1 222829717 222830182 -59363482 + Charlie1 DNA MER1_type 2149 2624 -137 24 0 0 0 chr1 222830182 222830206 -59363458 + AT_rich Low_complexity Low_complexity 1 24 0 3775 202 9 11 chr1 222830235 222830934 -59362730 - ERVL-B2 LTR ERVL -3553 2211 1515 442 145 36 12 chr1 222830934 222831017 -59362647 - MSTD LTR MaLR 0 396 312 459 169 37 32 chr1 222831117 222831230 -59362434 - MSTD LTR MaLR -257 117 1 5909 230 69 50 chr1 222831235 222832923 -59360741 - MSTD-int LTR MaLR -13 1722 2 970 215 153 45 chr1 222832925 222832976 -59360688 - MSTD LTR MaLR 0 396 352 252 0 0 0 chr1 222832976 222833004 -59360660 + (TA)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr1 222833003 222833030 -59360634 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 970 215 153 45 chr1 222833004 222833332 -59360332 - MSTD LTR MaLR -44 352 5 6992 204 62 21 chr1 222833332 222834785 -59358879 - ERVL-B2 LTR ERVL -4249 1515 4 707 190 177 6 chr1 222834788 222835040 -59358624 - MLT2B2 LTR ERVL 0 515 172 827 135 0 0 chr1 222835048 222835181 -59358483 - MLT2B1 LTR ERVL -387 133 1 566 266 114 16 chr1 222835237 222835421 -59358243 + MIR SINE MIR 49 250 -12 5704 124 61 53 chr1 222835532 222836517 -59357147 + L1M1 LINE L1 1150 2240 -5325 5615 79 9 25 chr1 222836517 222837304 -59356360 + SVA Other Other 613 1386 0 5704 124 61 53 chr1 222837304 222837760 -59355904 + L1M1 LINE L1 2240 2691 -4874 2886 113 29 0 chr1 222838074 222838489 -59355175 - MSTA LTR MaLR -1 427 1 25 0 0 0 chr1 222839130 222839155 -59354509 + AT_rich Low_complexity Low_complexity 1 25 0 260 196 22 0 chr1 222839226 222839272 -59354392 + MER5A DNA MER1_type 58 104 -85 494 232 14 133 chr1 222839383 222839594 -59354070 - MLT1I LTR MaLR -2 407 222 1495 130 6 118 chr1 222839797 222840048 -59353616 - L1MA10 LINE L1 0 6334 6056 1957 124 139 3 chr1 222840048 222840378 -59353286 + THE1C LTR MaLR 1 375 0 9796 108 48 30 chr1 222840378 222841931 -59351733 + THE1C-int LTR MaLR 1 1580 0 2588 110 5 3 chr1 222841932 222842305 -59351359 + THE1C LTR MaLR 2 375 0 1495 130 6 118 chr1 222842305 222842338 -59351326 - L1MA10 LINE L1 -277 6057 6089 2925 111 92 6 chr1 222842338 222842816 -59350848 + LTR44 LTR ERV1 1 519 0 1495 130 6 118 chr1 222842816 222842874 -59350790 - L1MA10 LINE L1 -244 6090 6027 712 284 115 47 chr1 222842905 222843306 -59350358 - LTR16C LTR ERVL -2 489 62 251 315 22 11 chr1 222843524 222843616 -59350048 + MER117 DNA MER1_type 16 108 -89 12130 60 0 6 chr1 222844057 222845659 -59348005 + L1P LINE L1 2520 4111 -2035 1505 122 60 129 chr1 222846785 222847188 -59346476 + THE1C LTR MaLR 1 375 0 1136 207 4 20 chr1 222847214 222847445 -59346219 + AluJo SINE Alu 71 299 -13 1485 94 10 0 chr1 222847445 222847637 -59346027 + AluSg SINE Alu 1 194 -116 1136 207 4 20 chr1 222847637 222847651 -59346013 + AluJo SINE Alu 299 312 0 1665 230 109 20 chr1 222847656 222848151 -59345513 + MLT1G LTR MaLR 52 590 0 385 293 73 27 chr1 222848502 222848592 -59345072 - MER5A DNA MER1_type -12 177 75 2061 124 0 3 chr1 222848592 222848915 -59344749 - AluSx SINE Alu 0 322 1 385 293 73 27 chr1 222848915 222848973 -59344691 - MER5A DNA MER1_type -114 75 21 523 283 102 80 chr1 222849628 222849794 -59343870 + HAL1 LINE L1 9 170 -2337 2107 137 0 6 chr1 222849794 222850108 -59343556 - AluSx SINE Alu 0 312 1 523 283 102 80 chr1 222850108 222850478 -59343186 + HAL1 LINE L1 170 557 -1950 596 253 102 54 chr1 222850508 222851006 -59342658 + HAL1 LINE L1 867 1388 -1119 1419 264 118 22 chr1 222851120 222851391 -59342273 + HAL1 LINE L1 1637 1881 -626 357 24 0 0 chr1 222851391 222851433 -59342231 + (CA)n Simple_repeat Simple_repeat 1 42 0 1419 264 118 22 chr1 222851433 222851808 -59341856 + HAL1 LINE L1 1881 2345 -162 249 259 168 23 chr1 222851809 222851940 -59341724 - LTR16C LTR ERVL -1 490 341 2148 133 3 0 chr1 222852128 222852437 -59341227 + AluSg SINE Alu 1 310 0 5322 220 70 15 chr1 222853037 222854415 -59339249 - Charlie1a DNA MER1_type 0 1455 2 183 408 25 8 chr1 222854594 222854714 -59338950 + MIR SINE MIR 56 177 -85 628 216 22 93 chr1 222854722 222854926 -59338738 + MER5A DNA MER1_type 2 189 0 1977 164 3 0 chr1 222856303 222856608 -59337056 + AluJb SINE Alu 1 306 -6 419 336 114 28 chr1 222857024 222857462 -59336202 - L2 LINE L2 -46 3267 2790 332 305 204 34 chr1 222857462 222857928 -59335736 - L2 LINE L2 -1348 1966 1422 571 247 32 19 chr1 222859217 222859375 -59334289 + L1ME3A LINE L1 5417 5576 -588 824 243 29 29 chr1 222859395 222859605 -59334059 + MER63A DNA MER1_type 1 210 0 1516 253 121 6 chr1 222859610 222860116 -59333548 + L1ME3A LINE L1 5598 6161 -9 408 311 86 0 chr1 222860233 222860384 -59333280 + MIR SINE MIR 61 224 -38 * 1073 300 73 31 chr1 222860382 222861018 -59332646 + L2 LINE L2 2656 3313 0 341 336 55 0 chr1 222863204 222863350 -59330314 + MIR SINE MIR 4 157 -105 460 228 66 15 chr1 222863556 222863692 -59329972 - MIR SINE MIR -77 185 43 2340 172 26 45 chr1 222863787 222864317 -59329347 + Charlie1b DNA MER1_type 1 520 -3 2833 161 16 10 chr1 222864858 222865349 -59328315 + LTR42 LTR ERVL 1 494 -1 1410 208 91 60 chr1 222865486 222865523 -59328141 - MLT2B1 LTR ERVL -6 514 480 674 87 10 0 chr1 222865523 222865626 -59328038 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 1410 208 91 60 chr1 222865626 222865928 -59327736 - MLT2B1 LTR ERVL -40 480 200 1893 110 24 10 chr1 222865928 222866218 -59327446 + AluSx SINE Alu 3 296 -16 1410 208 91 60 chr1 222866218 222866425 -59327239 - MLT2B1 LTR ERVL -320 200 1 924 219 115 33 chr1 222867321 222867803 -59325861 + L1MA4 LINE L1 5588 6178 -2 22 35 0 0 chr1 222867877 222867906 -59325758 + AT_rich Low_complexity Low_complexity 1 29 0 1833 182 32 84 chr1 222868737 222869270 -59324394 - MLT1D LTR MaLR 0 505 1 797 246 92 83 chr1 222869387 222869842 -59323822 + MLT1H1 LTR MaLR 3 461 -81 299 303 142 64 chr1 222870303 222870663 -59323001 - L2 LINE L2 0 3313 2926 1094 186 114 150 chr1 222872391 222872975 -59320689 - MLT1F1 LTR MaLR 0 567 3 34 0 0 0 chr1 222873435 222873469 -59320195 + AT_rich Low_complexity Low_complexity 1 34 0 240 226 0 16 chr1 222873491 222873553 -59320111 - MIR SINE MIR 0 262 202 180 77 0 0 chr1 222874445 222874471 -59319193 + (TG)n Simple_repeat Simple_repeat 1 26 0 236 87 0 0 chr1 222874580 222874626 -59319038 - LTR66 LTR ERVL -171 439 394 302 159 32 0 chr1 222874631 222874694 -59318970 + (TATG)n Simple_repeat Simple_repeat 2 66 0 2776 223 7 5 chr1 222876506 222877067 -59316597 - MER68 LTR ERV1 0 562 1 525 302 17 0 chr1 222877187 222877359 -59316305 + L1ME1 LINE L1 5988 6162 -4 1494 217 0 91 chr1 222877613 222877908 -59315756 - MER89 LTR ERV1 0 559 280 3387 77 11 9 chr1 222877908 222878072 -59315592 + LTR22A LTR ERVK 1 163 -295 2272 33 7 4 chr1 222878072 222878345 -59315319 - AluY SINE Alu -1 310 37 3387 77 11 9 chr1 222878345 222878637 -59315027 + LTR22A LTR ERVK 163 458 0 1494 217 0 91 chr1 222878637 222878886 -59314778 - MER89 LTR ERV1 -279 280 2 480 299 75 5 chr1 222879317 222879504 -59314160 - MIR SINE MIR -55 207 8 29 0 0 0 chr1 222881492 222881521 -59312143 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 222881640 222881668 -59311996 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 222882402 222882425 -59311239 + AT_rich Low_complexity Low_complexity 1 23 0 335 268 12 0 chr1 222883957 222884039 -59309625 + L1MC/D LINE L1 5719 5801 -2007 808 287 81 19 chr1 222884047 222884368 -59309296 + L1MC/D LINE L1 100 440 -5956 1417 186 28 65 chr1 222884368 222884622 -59309042 + L1MC/D LINE L1 3807 4069 -2146 1636 189 7 0 chr1 222884622 222884903 -59308761 + AluJo SINE Alu 1 283 -29 1417 186 28 65 chr1 222884903 222885202 -59308462 + L1MC/D LINE L1 4069 4453 -1762 1336 127 96 35 chr1 222885195 222885455 -59308209 + THE1-int LTR MaLR 512 787 -793 * 1013 131 131 19 chr1 222885462 222885676 -59307988 + MSTA LTR MaLR 191 428 0 783 180 6 0 chr1 222885676 222885837 -59307827 + L1MA7 LINE L1 4675 4836 -1310 466 220 20 0 chr1 222885838 222885938 -59307726 + MLT2A2 LTR ERVL 154 255 -198 2678 169 20 1 chr1 222885938 222886561 -59307103 + L1MA7 LINE L1 4842 5470 -749 1020 134 43 91 chr1 222886630 222886883 -59306781 + L1MA7 LINE L1 5989 6229 -62 285 232 0 0 chr1 222886888 222886957 -59306707 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 2058 144 0 0 chr1 222886958 222887250 -59306414 - AluSx SINE Alu -20 292 1 794 198 20 10 chr1 222887273 222887470 -59306194 + L1MC/D LINE L1 4549 4747 -1468 1337 228 23 18 chr1 222887474 222887860 -59305804 + L1MC/D LINE L1 4686 5073 -1142 1634 161 3 71 chr1 222887860 222888004 -59305660 + AluJo SINE Alu 6 117 -195 7635 22 3 0 chr1 222888004 222889383 -59304281 + L1PA3 LINE L1 4774 6155 0 1634 161 3 71 chr1 222889383 222889562 -59304102 + AluJo SINE Alu 117 307 -5 2239 120 3 0 chr1 222889564 222889864 -59303800 + AluSx SINE Alu 1 301 -11 1161 266 5 5 chr1 222889864 222890232 -59303432 + L1MC/D LINE L1 5105 5472 -743 1981 171 31 48 chr1 222890237 222890810 -59302854 + MLT2A2 LTR ERVL 1 554 0 21616 101 18 5 chr1 222890810 222892408 -59301256 + HERVL-A2 LTR ERVL 1 1577 -4077 1889 88 16 4 chr1 222892408 222892811 -59300853 - AluY SINE Alu 0 435 30 21616 101 18 5 chr1 222892811 222895034 -59298630 + HERVL-A2 LTR ERVL 1577 3918 -1736 2255 135 41 11 chr1 222895041 222895404 -59298260 - THE1C LTR MaLR -1 374 1 8144 136 37 1 chr1 222895404 222896697 -59296967 - THE1C-int LTR MaLR 0 1580 242 275 182 15 15 chr1 222896693 222896759 -59296905 - THE1C-int LTR MaLR -1514 66 1 * 890 87 8 0 chr1 222896759 222896886 -59296778 - THE1C LTR MaLR 0 375 248 11571 92 30 0 chr1 222896888 222898548 -59295116 + HERVL-A2 LTR ERVL 3945 5654 0 1927 173 39 35 chr1 222898548 222899097 -59294567 + MLT2A2 LTR ERVL 1 554 0 1431 144 8 0 chr1 222899100 222899350 -59294314 + L1MC/D LINE L1 5476 5727 -675 326 160 0 13 chr1 222899350 222899425 -59294239 + GA-rich Low_complexity Low_complexity 3 76 0 210 272 0 37 chr1 222899562 222899762 -59293902 + CT-rich Low_complexity Low_complexity 1 192 0 547 130 20 0 chr1 222899953 222900053 -59293611 + GA-rich Low_complexity Low_complexity 2 103 0 341 133 13 40 chr1 222900053 222900128 -59293536 + L1MCb LINE L1 551 623 -5422 1823 129 10 20 chr1 222900132 222900434 -59293230 - AluJb SINE Alu 0 312 14 1857 191 23 7 chr1 222900468 222901204 -59292460 - L1MC/D LINE L1 -705 5908 5130 * 4837 173 39 61 chr1 222901199 222902305 -59291359 - L1MC/D LINE L1 -5320 1106 25 376 249 55 36 chr1 222902305 222902470 -59291194 - MER67A LTR ERV1 0 543 376 340 275 48 55 chr1 222902578 222902772 -59290892 - MER67B LTR ERV1 -322 221 1 2081 112 44 3 chr1 222903066 222903362 -59290302 - AluSq SINE Alu -5 308 1 2271 98 17 0 chr1 222903641 222903937 -59289727 - AluSc SINE Alu -8 301 1 1142 213 61 37 chr1 222904053 222904381 -59289283 - MER46C DNA MER2_type -1 337 2 387 257 303 11 chr1 222905169 222905344 -59288320 + MIR SINE MIR 37 262 0 28 0 0 0 chr1 222905400 222905428 -59288236 + AT_rich Low_complexity Low_complexity 1 28 0 241 380 171 15 chr1 222905608 222905871 -59287793 + L2 LINE L2 2945 3248 -24 1002 155 20 109 chr1 222906693 222906996 -59286668 + L1MA9 LINE L1 6010 6285 -27 1815 247 240 29 chr1 222907413 222908585 -59285079 + L2 LINE L2 1877 3312 -1 1029 202 27 5 chr1 222908678 222908971 -59284693 + MER33 DNA MER1_type 1 293 -31 428 299 37 51 chr1 222909431 222909652 -59284012 - MIR SINE MIR -41 221 5 2301 60 43 0 chr1 222910284 222910566 -59283098 - AluY SINE Alu -17 294 1 389 333 46 53 chr1 222911150 222911453 -59282211 + L2 LINE L2 2402 2702 -612 1983 143 0 23 chr1 222911540 222911847 -59281817 - AluSx SINE Alu -12 300 1 1142 225 138 18 chr1 222911874 222912274 -59281390 + L1ME3A LINE L1 5717 6164 -6 456 330 52 5 chr1 222912422 222912616 -59281048 + L2 LINE L2 2891 3093 -179 1632 254 86 49 chr1 222913086 222913742 -59279922 + Charlie8 DNA MER1_type 16 699 -244 1691 190 38 0 chr1 222913742 222914032 -59279632 + AluJb SINE Alu 1 301 -11 1632 254 86 49 chr1 222914032 222914218 -59279446 + Charlie8 DNA MER1_type 699 877 -66 1956 135 7 0 chr1 222914639 222914928 -59278736 + AluSq SINE Alu 1 291 -22 1476 211 171 21 chr1 222915207 222915676 -59277988 + MLT1F LTR MaLR 3 541 -1 221 234 21 0 chr1 222915853 222915900 -59277764 + L2 LINE L2 3258 3305 -8 2289 101 10 0 chr1 222916021 222916328 -59277336 + AluSx SINE Alu 1 310 -2 2348 246 105 20 chr1 222917139 222918065 -59275599 + L1MC4 LINE L1 6884 7887 -155 207 0 0 0 chr1 222918076 222918099 -59275565 + (TG)n Simple_repeat Simple_repeat 2 24 0 2372 88 3 0 chr1 222918180 222918486 -59275178 + AluSx SINE Alu 1 307 -5 1115 152 0 0 chr1 222918486 222918651 -59275013 + AluSg/x SINE Alu 134 298 -14 836 174 31 6 chr1 222918890 222919051 -59274613 + FRAM SINE Alu 1 165 -1 200 333 64 50 chr1 222919758 222919817 -59273847 + L2 LINE L2 2659 2716 -598 2188 162 65 7 chr1 222919817 222920279 -59273385 + L1MB2 LINE L1 5682 6170 -1 200 333 64 50 chr1 222920279 222920438 -59273226 + L2 LINE L2 2716 2880 -434 327 256 24 0 chr1 222920685 222920767 -59272897 + L2 LINE L2 3230 3313 0 2678 190 16 62 chr1 222921010 222921652 -59272012 + LTR9 LTR ERV1 1 612 0 413 266 28 0 chr1 222921834 222921943 -59271721 - MLT1H LTR MaLR -40 509 398 301 280 30 65 chr1 222922001 222922169 -59271495 - MLT1H LTR MaLR -387 162 1 438 224 133 0 chr1 222922321 222922464 -59271200 + L1P5 LINE L1 8 169 -6694 13573 194 36 14 chr1 222922489 222926420 -59267244 + L1P5 LINE L1 903 5146 -1721 180 0 0 0 chr1 222926420 222926440 -59267224 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 13573 194 36 14 chr1 222926440 222927821 -59265843 + L1P5 LINE L1 5146 6494 -373 1167 139 39 2 chr1 222928022 222928331 -59265333 + MLT1B LTR MaLR 3 388 -2 396 198 189 0 chr1 222929477 222929588 -59264076 + MIR SINE MIR 74 205 -57 180 263 138 38 chr1 222929604 222929684 -59263980 - L2 LINE L2 -33 3280 3193 761 287 97 7 chr1 222929695 222929942 -59263722 + MLT1H LTR MaLR 24 291 -258 4034 219 15 41 chr1 222930610 222931626 -59262038 + L1MD2 LINE L1 4103 5083 -1063 2342 85 3 13 chr1 222931626 222931933 -59261731 + AluSx SINE Alu 1 304 -8 4034 219 15 41 chr1 222931933 222932126 -59261538 + L1MD2 LINE L1 5083 5280 -866 3043 176 149 16 chr1 222932129 222932866 -59260798 - Tigger6a DNA MER2_type -247 836 2 4767 184 34 40 chr1 222932866 222932913 -59260751 + L1MD2 LINE L1 5268 5314 -1045 2423 97 0 0 chr1 222932913 222933221 -59260443 + AluSc SINE Alu 1 308 -1 4767 184 34 40 chr1 222933221 222934272 -59259392 + L1MD2 LINE L1 5314 6359 0 372 291 28 15 chr1 222934275 222934417 -59259247 + L1P4 LINE L1 5612 5757 -411 276 95 0 24 chr1 222934989 222935031 -59258633 - LTR50 LTR ERVL -1 794 754 481 249 69 37 chr1 222935498 222935715 -59257949 - LTR41 LTR ERVL -549 224 1 287 309 16 41 chr1 222936359 222936482 -59257182 - MER5A DNA MER1_type -44 145 26 517 264 174 0 chr1 222936527 222936682 -59256982 + Charlie7 DNA MER1_type 5 186 -2426 577 166 91 53 chr1 222936762 222936949 -59256715 + Charlie7 DNA MER1_type 375 568 -2044 290 272 118 35 chr1 222936950 222937119 -59256545 + Charlie7 DNA MER1_type 1778 1960 -652 195 100 0 0 chr1 222938227 222938257 -59255407 + (TG)n Simple_repeat Simple_repeat 1 30 0 738 266 30 34 chr1 222938550 222938817 -59254847 - MARNA DNA Mariner -138 448 183 394 305 7 28 chr1 222938987 222939128 -59254536 + L2 LINE L2 3175 3312 -1 271 37 481 0 chr1 222939282 222939336 -59254328 + MADE1 DNA Mariner 1 80 0 190 302 0 0 chr1 222939571 222939634 -59254030 + L2 LINE L2 2930 2992 -321 2322 61 3 45 chr1 222940588 222940898 -59252766 + AluY SINE Alu 1 297 -14 410 326 70 19 chr1 222942095 222942310 -59251354 + L2 LINE L2 3088 3313 0 992 297 179 28 chr1 222942402 222943271 -59250393 + L2 LINE L2 2277 3293 -20 873 406 70 24 chr1 222946614 222947028 -59246636 - MER57B LTR ERV1 0 434 2 1686 164 50 33 chr1 222947639 222947983 -59245681 + MLT2D LTR ERVL 34 480 -40 466 206 0 43 chr1 222947985 222948126 -59245538 + (CA)n Simple_repeat Simple_repeat 2 136 0 489 163 20 10 chr1 222948219 222948317 -59245347 + MLT2C2 LTR ERVL 34 132 -332 290 173 0 0 chr1 222948323 222948375 -59245289 + MLT2D LTR ERVL 469 520 0 296 327 56 9 chr1 222948519 222948626 -59245038 + L2 LINE L2 3150 3261 -11 25 0 0 0 chr1 222949165 222949190 -59244474 + AT_rich Low_complexity Low_complexity 1 25 0 205 322 5 10 chr1 222949342 222949382 -59244282 + MIR SINE MIR 14 53 -155 1920 139 32 19 chr1 222949382 222949691 -59243973 + AluSq SINE Alu 1 313 0 205 322 5 10 chr1 222949691 222949750 -59243914 + MIR SINE MIR 53 112 -96 689 289 84 50 chr1 222950790 222951208 -59242456 - MLT1J LTR MaLR -1 510 79 892 331 91 13 chr1 222951217 222952009 -59241655 + L2 LINE L2 2453 3311 -2 1158 234 96 35 chr1 222952206 222952600 -59241064 + MLT1C LTR MaLR 6 423 -44 504 203 24 24 chr1 222952609 222952732 -59240932 - MER53 DNA DNA -65 124 2 487 92 23 0 chr1 222953454 222953541 -59240123 + (GA)n Simple_repeat Simple_repeat 1 89 0 296 300 150 0 chr1 222954393 222954513 -59239151 - MIR SINE MIR -3 259 122 188 271 0 0 chr1 222954790 222954838 -59238826 - MER5A DNA MER1_type -132 57 10 250 308 99 0 chr1 222954904 222954995 -59238669 - L2 LINE L2 -4 3268 3169 823 137 46 7 chr1 222955328 222955481 -59238183 + L1MA8 LINE L1 6132 6290 -1 429 297 203 24 chr1 222955634 222955924 -59237740 - L2 LINE L2 -798 2516 2175 3416 116 9 35 chr1 222956218 222956828 -59236836 + L1PB1 LINE L1 5598 6192 0 22 0 0 0 chr1 222957411 222957433 -59236231 + AT_rich Low_complexity Low_complexity 1 22 0 289 124 41 15 chr1 222957678 222957744 -59235920 - MLT1F LTR MaLR 0 624 473 1361 205 20 61 chr1 222957749 222958042 -59235622 - MLT1F LTR MaLR -259 283 3 1205 279 29 9 chr1 222959654 222960004 -59233660 - MLT1I LTR MaLR -14 395 63 2505 74 0 0 chr1 222961406 222961715 -59231949 + AluSc SINE Alu 1 309 0 526 243 127 17 chr1 222961768 222961941 -59231723 + MIR SINE MIR 3 194 -68 407 302 38 46 chr1 222961945 222962150 -59231514 - MER21B LTR ERV1 -4 601 505 2816 123 39 2 chr1 222962155 222962800 -59230864 - Tigger1 DNA MER2_type -4 2414 1697 * 7374 149 28 3 chr1 222962788 222963995 -59229669 - Tigger1 DNA MER2_type -1181 1237 1 791 253 18 41 chr1 222963995 222964269 -59229395 - MER77 LTR ERV1 -77 528 260 379 282 74 20 chr1 222965382 222965531 -59228133 + MIR SINE MIR 70 226 -36 200 299 111 8 chr1 222965685 222965802 -59227862 - L2 LINE L2 -1336 1978 1850 25 0 0 0 chr1 222966690 222966715 -59226949 + AT_rich Low_complexity Low_complexity 1 25 0 1931 148 4 0 chr1 222966785 222967063 -59226601 - AluSx SINE Alu -33 279 1 1176 202 36 45 chr1 222967398 222967729 -59225935 + L1M4 LINE L1 4823 5150 -996 1207 206 11 4 chr1 222967742 222968009 -59225655 - L1ME LINE L1 -548 5618 5350 389 88 0 0 chr1 222968009 222968066 -59225598 + L1MA1 LINE L1 6246 6302 0 438 246 109 0 chr1 222968299 222968437 -59225227 - L1MA10 LINE L1 0 6334 6182 309 100 40 0 chr1 222968540 222968590 -59225074 + Alu SINE Alu 249 300 -2 438 258 0 0 chr1 222968595 222968754 -59224910 + (TA)n Simple_repeat Simple_repeat 2 160 0 257 241 0 9 chr1 222968768 222968876 -59224788 + (TA)n Simple_repeat Simple_repeat 1 107 0 300 300 0 0 chr1 222968892 222968982 -59224682 + L1MC4 LINE L1 6614 6703 -1339 684 209 0 0 chr1 222968997 222969174 -59224490 + (TA)n Simple_repeat Simple_repeat 2 178 0 198 103 0 0 chr1 222969545 222969574 -59224090 + (T)n Simple_repeat Simple_repeat 1 29 0 2357 87 0 7 chr1 222969837 222970137 -59223527 - AluY SINE Alu -13 298 1 452 335 113 0 chr1 222970621 222970931 -59222733 - L1M4 LINE L1 -3655 2491 2147 432 37 0 0 chr1 222971617 222971671 -59221993 + (TG)n Simple_repeat Simple_repeat 2 55 0 184 326 0 0 chr1 222972073 222972119 -59221545 + L2 LINE L2 2866 2911 -361 24 32 0 0 chr1 222973130 222973161 -59220503 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr1 222973164 222973202 -59220462 + (TA)n Simple_repeat Simple_repeat 2 40 0 2099 116 3 7 chr1 222974242 222974544 -59219120 - AluSp SINE Alu -11 302 2 208 342 108 8 chr1 222976577 222976697 -59216967 + MER5A DNA MER1_type 2 133 -56 265 358 166 0 chr1 222977079 222977272 -59216392 + MIR SINE MIR 21 245 -17 7981 109 15 38 chr1 222977520 222980936 -59212728 - L1PA8 LINE L1 0 6172 2833 4814 119 22 1 chr1 222980932 222981663 -59212001 + L1P LINE L1 1412 2157 -3989 * 234 231 77 0 chr1 222981651 222981742 -59211922 - L1M4 LINE L1 -3130 3016 2919 * 254 173 39 0 chr1 222981748 222981800 -59211864 - MLT1A2 LTR MaLR -4 386 333 905 229 19 19 chr1 222981823 222982033 -59211631 - MLT1A2 LTR MaLR -164 210 1 337 309 92 13 chr1 222982180 222982484 -59211180 - L1M4 LINE L1 -3539 2607 2280 874 183 0 0 chr1 222982720 222982862 -59210802 - AluJo SINE Alu -170 142 1 381 93 0 0 chr1 222983231 222983285 -59210379 + (TG)n Simple_repeat Simple_repeat 1 54 0 23 0 0 0 chr1 222984808 222984831 -59208833 + AT_rich Low_complexity Low_complexity 1 23 0 360 363 109 44 chr1 222984850 222985216 -59208448 + L2 LINE L2 2818 3207 -65 466 341 0 6 chr1 222985344 222985523 -59208141 + MARNA DNA Mariner 342 519 -67 2000 156 0 10 chr1 222988601 222988915 -59204749 - AluSx SINE Alu -1 311 1 322 278 128 55 chr1 222989885 222990121 -59203543 + L1ME4a LINE L1 5652 5912 -209 2670 86 11 6 chr1 222990121 222990481 -59203183 - THE1B LTR MaLR 0 364 3 322 278 128 55 chr1 222990481 222990517 -59203147 + L1ME4a LINE L1 5912 5944 -177 206 244 81 35 chr1 222992696 222992782 -59200882 + MIR SINE MIR 89 178 -84 2115 99 0 0 chr1 222993002 222993285 -59200379 + AluY SINE Alu 29 311 0 292 303 0 0 chr1 222993596 222993662 -59200002 - L2 LINE L2 0 3272 3207 1346 115 20 45 chr1 222993894 222994138 -59199526 + L1PA14 LINE L1 5815 6052 -109 354 289 0 0 chr1 222994895 222995016 -59198648 + (TA)n Simple_repeat Simple_repeat 1 121 0 225 102 0 136 chr1 222995016 222995075 -59198589 - L1MC4 LINE L1 -1339 6703 6653 348 24 0 0 chr1 222995075 222995116 -59198548 + (CA)n Simple_repeat Simple_repeat 1 41 0 216 213 200 50 chr1 222996151 222996231 -59197433 - L2 LINE L2 -4 3268 3177 251 292 83 17 chr1 222996377 222996497 -59197167 - L2 LINE L2 -210 3062 2935 340 370 127 7 chr1 222996584 222996860 -59196804 - L2 LINE L2 -518 2796 2488 234 0 0 0 chr1 222997000 222997026 -59196638 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 888 216 0 18 chr1 222997030 222997201 -59196463 - AluJo SINE Alu -30 282 115 301 241 175 20 chr1 222997237 222997377 -59196287 - MIR SINE MIR -52 210 42 382 250 26 26 chr1 222997474 222997590 -59196074 - MIR SINE MIR -56 206 91 242 211 138 46 chr1 222997532 222997641 -59196023 - MER91B DNA MER1_type -55 135 17 * 202 220 0 20 chr1 222999586 222999636 -59194028 + CT-rich Low_complexity Low_complexity 2 50 0 234 0 0 0 chr1 222999714 222999740 -59193924 + (CA)n Simple_repeat Simple_repeat 2 27 0 279 65 0 43 chr1 223001081 223001127 -59192537 - L1PA16 LINE L1 -16 6150 6107 222 91 0 0 chr1 223001529 223001562 -59192102 + (T)n Simple_repeat Simple_repeat 1 33 0 318 303 91 42 chr1 223001760 223001925 -59191739 + MIR3 SINE MIR 31 203 -5 369 316 26 17 chr1 223002151 223002268 -59191396 - L2 LINE L2 -16 3297 3180 1987 127 25 0 chr1 223002968 223003252 -59190412 + AluSx SINE Alu 1 291 -21 320 257 27 14 chr1 223004207 223004281 -59189383 + L2 LINE L2 3238 3312 -1 197 336 81 34 chr1 223004518 223004667 -59188997 - L2 LINE L2 -23 3290 3135 1729 228 162 51 chr1 223004759 223004997 -59188667 - Charlie2 DNA MER1_type -1 2861 2651 968 130 53 0 chr1 223004997 223005166 -59188498 - L1MA5A LINE L1 -2 6295 6118 1729 228 162 51 chr1 223005166 223005832 -59187832 - Charlie2 DNA MER1_type -211 2651 1856 651 252 31 59 chr1 223005902 223006124 -59187540 - Charlie2 DNA MER1_type -2554 228 13 287 216 122 0 chr1 223006785 223006859 -59186805 + MIR3 SINE MIR 101 183 -25 1972 99 3 87 chr1 223008256 223008568 -59185096 + AluSg SINE Alu 1 286 -24 284 228 291 31 chr1 223009170 223009297 -59184367 - MIR SINE MIR -1 261 102 3005 232 70 38 chr1 223009473 223011427 -59182237 + L1MC3 LINE L1 1 2097 -4467 3531 250 41 14 chr1 223011480 223012672 -59180992 + L1MC3 LINE L1 2892 4115 -2449 * 9906 186 66 21 chr1 223012666 223014875 -59178789 + L1MC3 LINE L1 5888 8195 -8 3142 184 73 157 chr1 223015340 223016783 -59176881 - L1MCb LINE L1 -4851 1194 1 24 32 0 0 chr1 223017449 223017480 -59176184 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr1 223018063 223018092 -59175572 + (CA)n Simple_repeat Simple_repeat 2 30 0 2093 124 0 0 chr1 223018095 223018385 -59175279 - AluY SINE Alu -21 290 1 201 206 0 0 chr1 223018412 223018446 -59175218 - L3 LINE CR1 -1111 466 433 2466 92 0 0 chr1 223018951 223019257 -59174407 - AluSx SINE Alu -6 306 1 537 254 14 7 chr1 223019490 223019632 -59174032 + MER58B DNA MER1_type 199 341 0 24 0 0 0 chr1 223019650 223019674 -59173990 + AT_rich Low_complexity Low_complexity 1 24 0 1421 272 123 38 chr1 223020022 223020901 -59172763 - L2 LINE L2 0 3313 2349 375 290 65 8 chr1 223021767 223021891 -59171773 + MIR3 SINE MIR 4 134 -74 1592 219 25 36 chr1 223021973 223022334 -59171330 - MLT1A1 LTR MaLR -8 357 1 4754 139 101 20 chr1 223022783 223023822 -59169842 + Tigger3b DNA MER2_type 1 1231 0 2361 62 0 26 chr1 223024306 223024613 -59169051 + AluY SINE Alu 1 299 -12 240 35 0 0 chr1 223024613 223024642 -59169022 + (TA)n Simple_repeat Simple_repeat 2 30 0 3768 166 22 4 chr1 223024784 223025476 -59168188 - L1MA6 LINE L1 -26 6274 5571 5768 153 43 1 chr1 223025483 223026716 -59166948 + L1MA6 LINE L1 4280 5559 -741 394 272 12 169 chr1 223027058 223027312 -59166352 + MIR SINE MIR 8 221 -41 2320 197 44 26 chr1 223027576 223028120 -59165544 + L1ME1 LINE L1 5581 6134 -32 2234 100 0 7 chr1 223028121 223028411 -59165253 + AluSg1 SINE Alu 1 288 -21 28 48 0 0 chr1 223028435 223028477 -59165187 + AT_rich Low_complexity Low_complexity 1 42 0 232 235 59 24 chr1 223028488 223028573 -59165091 + MLT1F LTR MaLR 1 88 -502 552 236 151 33 chr1 223028619 223028913 -59164751 + MLT1F LTR MaLR 142 542 0 37 43 0 14 chr1 223029001 223029034 -59164630 + AT_rich Low_complexity Low_complexity 1 33 -35 1192 145 33 12 chr1 223029034 223029275 -59164389 + L1MA7 LINE L1 6042 6287 -4 37 43 0 14 chr1 223029275 223029310 -59164354 + AT_rich Low_complexity Low_complexity 33 68 0 276 321 66 28 chr1 223029451 223029663 -59164001 + L1MC/D LINE L1 5352 5571 -2237 1872 114 4 8 chr1 223029667 223029929 -59163735 - AluSx SINE Alu -8 304 44 304 335 86 41 chr1 223029963 223030201 -59163463 - MLT1J2 LTR MaLR -51 399 148 333 82 0 0 chr1 223030201 223030250 -59163414 + (TG)n Simple_repeat Simple_repeat 1 49 0 577 186 0 76 chr1 223031737 223031882 -59161782 + MER94 DNA DNA 1 134 0 558 286 123 47 chr1 223031988 223032289 -59161375 - LTR16C LTR ERVL -97 394 71 425 211 11 0 chr1 223033782 223033872 -59159792 - MER103 DNA DNA -21 145 55 27 0 0 0 chr1 223035840 223035867 -59157797 + AT_rich Low_complexity Low_complexity 1 27 0 185 323 163 45 chr1 223037117 223037448 -59156216 - L2 LINE L2 -796 2518 2149 1932 265 70 44 chr1 223037474 223038448 -59155216 + L1ME3A LINE L1 5166 6166 -4 1604 178 72 6 chr1 223038678 223038999 -59154665 - MER2 DNA MER2_type -1 343 2 1341 147 147 39 chr1 223039153 223039459 -59154205 - MER44D DNA MER2_type 0 609 1 1455 211 113 27 chr1 223039986 223040394 -59153270 + MSTB2 LTR MaLR 15 457 0 280 307 0 0 chr1 223040504 223040605 -59153059 - L1MC4 LINE L1 -1328 6714 6614 551 310 108 23 chr1 223041492 223041834 -59151830 + MLT1L LTR MaLR 220 590 -25 219 278 218 0 chr1 223041841 223041974 -59151690 + MIR SINE MIR 46 207 -55 * 270 233 41 0 chr1 223041965 223042038 -59151626 - MIR SINE MIR 0 262 187 24 0 0 0 chr1 223042162 223042186 -59151478 + AT_rich Low_complexity Low_complexity 1 24 0 5020 154 28 18 chr1 223043992 223044948 -59148716 - L1MA9 LINE L1 -6 6306 5341 941 217 168 53 chr1 223044954 223045276 -59148388 - MLT1A1 LTR MaLR -1 364 6 4030 203 23 8 chr1 223045315 223046213 -59147451 - L1MA9 LINE L1 -1082 5064 4153 29314 113 12 24 chr1 223046214 223048665 -59144999 - L1PA7 LINE L1 0 6469 3992 243 0 0 0 chr1 223048665 223048692 -59144972 + (TTG)n Simple_repeat Simple_repeat 3 29 0 29314 113 12 24 chr1 223048692 223052236 -59141428 - L1PA7 LINE L1 -2477 3992 430 3190 202 44 8 chr1 223052240 223053075 -59140589 - L1MA9 LINE L1 -2361 3785 2921 2461 115 10 3 chr1 223053100 223053484 -59140180 - L1MA3 LINE L1 -8 7716 7330 234 53 0 0 chr1 223053548 223053586 -59140078 + L1PA6 LINE L1 6117 6154 0 * 13638 189 30 14 chr1 223053577 223057300 -59136364 - L1MA3 LINE L1 -377 7347 3564 367 64 0 0 chr1 223057334 223057381 -59136283 - L1MA3 LINE L1 -4580 2985 2939 295 65 0 22 chr1 223057388 223057434 -59136230 + L1M1 LINE L1 2848 2892 -4673 9546 171 13 10 chr1 223057453 223059016 -59134648 - L1MA3 LINE L1 -5981 1584 17 2506 253 26 18 chr1 223059010 223059910 -59133754 - L1M4c LINE L1 -3231 2803 1897 * 697 182 0 45 chr1 223059941 223060073 -59133591 - AluJb SINE Alu -186 126 1 2345 277 80 33 chr1 223060073 223062552 -59131112 - L1M4c LINE L1 -4125 1911 17 2422 73 3 0 chr1 223062558 223062858 -59130806 - AluY SINE Alu -10 301 1 207 363 54 30 chr1 223064045 223064191 -59129473 + MIR SINE MIR 9 150 -64 592 287 74 22 chr1 223064210 223064440 -59129224 - MIR SINE MIR -14 248 7 560 231 98 0 chr1 223065046 223065189 -59128475 - MLT1J2 LTR MaLR -44 406 250 562 291 42 5 chr1 223065189 223065378 -59128286 - MLT1J1 LTR MaLR -250 196 1 615 267 102 90 chr1 223065500 223065755 -59127909 + MLT1I LTR MaLR 59 289 -120 1760 179 14 0 chr1 223066291 223066582 -59127082 + AluSx SINE Alu 1 295 -17 359 252 8 61 chr1 223067229 223067360 -59126304 - MLT1K LTR MaLR -2 586 463 194 351 84 30 chr1 223067866 223067997 -59125667 + MIR SINE MIR 28 165 -97 306 295 148 0 chr1 223068253 223068375 -59125289 + MIR3 SINE MIR 47 186 -22 181 347 102 36 chr1 223069252 223069477 -59124187 - MIR SINE MIR -16 246 7 441 269 35 28 chr1 223069517 223069612 -59124052 - MIR SINE MIR -2 260 162 2020 40 4 0 chr1 223069612 223069860 -59123804 - L1PA4 LINE L1 -2 6153 5905 441 269 35 28 chr1 223069860 223069905 -59123759 - MIR SINE MIR -100 162 119 279 274 29 29 chr1 223069923 223070025 -59123639 + L2 LINE L2 2662 2763 -551 381 300 82 0 chr1 223070304 223070414 -59123250 + L2 LINE L2 3154 3272 0 1921 293 61 39 chr1 223073113 223074102 -59119562 + L2 LINE L2 2232 3239 -74 292 308 83 17 chr1 223075535 223075655 -59118009 + MER21B LTR ERV1 321 448 -415 24 0 0 0 chr1 223076073 223076097 -59117567 + AT_rich Low_complexity Low_complexity 1 24 0 2103 96 30 79 chr1 223076099 223076261 -59117403 - L1MA2 LINE L1 -5 6299 6131 1659 170 96 16 chr1 223076261 223076573 -59117091 + MER1B DNA MER1_type 1 337 0 2103 96 30 79 chr1 223076573 223076816 -59116848 - L1MA2 LINE L1 -173 6131 5914 257 0 0 29 chr1 223077333 223077367 -59116297 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 2478 79 0 0 chr1 223077367 223077685 -59115979 - L1PA6 LINE L1 -44 6110 5793 280 236 30 0 chr1 223078232 223078315 -59115349 + MLT1I LTR MaLR 70 156 -267 562 270 29 6 chr1 223078969 223079143 -59114521 + MER5B DNA MER1_type 1 178 0 1863 123 91 20 chr1 223079824 223080174 -59113490 + THE1C LTR MaLR 1 375 0 928 217 11 101 chr1 223080309 223080487 -59113177 + MIR SINE MIR 1 147 -115 2293 101 0 25 chr1 223080487 223080804 -59112860 - AluSc SINE Alu 0 309 1 928 217 11 101 chr1 223080804 223080902 -59112762 + MIR SINE MIR 147 252 -10 2055 214 33 11 chr1 223082692 223083141 -59110523 + LTR40b LTR ERVL 3 461 -1 423 256 57 15 chr1 223083194 223083339 -59110325 + MIR SINE MIR 54 205 -57 303 348 64 34 chr1 223084336 223084540 -59109124 - MIR SINE MIR -34 228 19 22 35 0 0 chr1 223085434 223085463 -59108201 + AT_rich Low_complexity Low_complexity 1 29 0 2104 159 71 22 chr1 223085479 223085887 -59107777 + MSTA LTR MaLR 1 428 0 615 269 64 67 chr1 223086524 223086866 -59106798 + L2 LINE L2 2956 3296 -17 427 317 174 13 chr1 223087596 223087774 -59105890 + MIR SINE MIR 2 225 -37 210 118 0 0 chr1 223087774 223087808 -59105856 + (CA)n Simple_repeat Simple_repeat 1 34 0 427 317 174 13 chr1 223087808 223087853 -59105811 + MIR SINE MIR 225 261 -1 339 25 0 0 chr1 223088377 223088417 -59105247 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr1 223089092 223089120 -59104544 + AT_rich Low_complexity Low_complexity 1 28 0 367 340 48 35 chr1 223089408 223089781 -59103883 - L1M4 LINE L1 -1221 4925 4548 215 296 25 25 chr1 223090003 223090084 -59103580 - MIR SINE MIR -51 211 131 203 339 35 43 chr1 223090083 223090198 -59103466 + L2 LINE L2 2948 3061 -211 * 208 260 14 55 chr1 223090265 223090338 -59103326 + L2 LINE L2 3178 3247 -25 1500 212 68 38 chr1 223092210 223092663 -59101001 - MLT1C LTR MaLR 0 467 1 248 327 163 20 chr1 223093046 223093199 -59100465 + L2 LINE L2 2173 2347 -967 191 408 7 20 chr1 223093551 223093698 -59099966 + L2 LINE L2 2844 2988 -284 1069 264 98 39 chr1 223095771 223096259 -59097405 + L1ME3A LINE L1 5643 6159 -11 3814 160 14 21 chr1 223096275 223096975 -59096689 + L1PB4 LINE L1 5450 6144 -12 3331 47 0 110 chr1 223097057 223097567 -59096097 - L1PA5 LINE L1 -5 6149 5696 3832 30 9 0 chr1 223097567 223098322 -59095342 + L1PA5 LINE L1 4925 5683 -472 180 292 77 0 chr1 223098857 223098922 -59094742 - MIR3 SINE MIR -3 205 136 195 236 55 0 chr1 223100238 223100293 -59093371 - L2 LINE L2 -5 3308 3251 1425 216 80 32 chr1 223100999 223101365 -59092299 - MER63B DNA MER1_type -640 422 34 4300 161 27 17 chr1 223101365 223102208 -59091456 + L1MA9 LINE L1 5461 6312 0 1425 216 80 32 chr1 223102208 223102243 -59091421 - MER63B DNA MER1_type -1028 34 2 636 232 45 19 chr1 223103102 223103257 -59090407 - MER58B DNA MER1_type 0 341 183 429 168 158 0 chr1 223103773 223103874 -59089790 + MER110 LTR ERV1 69 185 -306 976 252 90 66 chr1 223103874 223104331 -59089333 + MLT2B1 LTR ERVL 2 469 -51 252 185 84 0 chr1 223104334 223104453 -59089211 + (TA)n Simple_repeat Simple_repeat 1 129 0 1074 237 34 4 chr1 223104454 223104720 -59088944 + MER110 LTR ERV1 196 469 -22 239 197 171 103 chr1 223104778 223104895 -59088769 - L2 LINE L2 -2 3311 3187 22 0 0 0 chr1 223105721 223105743 -59087921 + AT_rich Low_complexity Low_complexity 1 22 0 1995 215 92 15 chr1 223106957 223107013 -59086651 - MLT1D LTR MaLR 0 505 455 2185 73 0 13 chr1 223107013 223107315 -59086349 + L1PA13 LINE L1 5865 6162 -1 1995 215 92 15 chr1 223107315 223107727 -59085937 - MLT1D LTR MaLR -50 455 1 195 161 32 16 chr1 223109237 223109299 -59084365 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr1 223110381 223110402 -59083262 + AT_rich Low_complexity Low_complexity 1 21 0 226 360 128 23 chr1 223110421 223110593 -59083071 + MIR3 SINE MIR 19 208 0 1323 179 121 16 chr1 223111152 223111459 -59082205 + MER44D DNA MER2_type 1 609 0 1556 244 115 46 chr1 223112416 223112975 -59080689 - MLT1G1 LTR MaLR 0 590 1 1291 205 36 42 chr1 223113012 223113348 -59080316 - L1MA10 LINE L1 -7 6327 5994 547 274 132 14 chr1 223113844 223114063 -59079601 - MIR SINE MIR 0 262 18 24 77 0 0 chr1 223115493 223115545 -59078119 + AT_rich Low_complexity Low_complexity 1 52 0 718 238 71 47 chr1 223115726 223116074 -59077590 + MLT1A1 LTR MaLR 1 449 -8 462 268 78 21 chr1 223116846 223116988 -59076676 - MIR SINE MIR -71 191 42 11961 158 16 15 chr1 223116997 223118417 -59075247 - Tigger7 DNA MER2_type -454 2033 610 1739 102 0 0 chr1 223118417 223118643 -59075021 - AluSg/x SINE Alu -14 296 71 11961 158 16 15 chr1 223118643 223119254 -59074410 - Tigger7 DNA MER2_type -1877 610 1 2416 67 0 10 chr1 223119941 223120239 -59073425 + AluY SINE Alu 1 295 -16 367 284 203 0 chr1 223120512 223120660 -59073004 - MER5A DNA MER1_type -1 188 11 282 313 107 0 chr1 223120698 223120810 -59072854 + MIR SINE MIR 47 170 -92 713 193 106 0 chr1 223121075 223121236 -59072428 + MER5A DNA MER1_type 12 189 0 2359 71 0 3 chr1 223123155 223123449 -59070215 - AluY SINE Alu -16 295 3 957 198 54 106 chr1 223123539 223124029 -59069635 - L1MC5 LINE L1 -52 7909 7448 2230 195 34 57 chr1 223124029 223124069 -59069595 - MLT2B2 LTR ERVL 0 515 476 204 40 0 0 chr1 223124069 223124094 -59069570 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 2230 195 34 57 chr1 223124094 223124580 -59069084 - MLT2B2 LTR ERVL -39 476 1 957 198 54 106 chr1 223124580 223124625 -59069039 - L1MC5 LINE L1 -513 7448 7402 222 37 0 0 chr1 223124637 223124664 -59069000 + (T)n Simple_repeat Simple_repeat 1 27 0 43090 30 21 1 chr1 223124666 223130691 -59062973 - L1HS LINE L1 -3 6152 3 1958 130 3 35 chr1 223131489 223131805 -59061859 - AluSq SINE Alu -7 306 1 441 155 24 0 chr1 223131991 223132075 -59061589 + L1MD3 LINE L1 7896 7981 -14 21 0 0 0 chr1 223132981 223133002 -59060662 + AT_rich Low_complexity Low_complexity 1 21 0 180 216 78 20 chr1 223133319 223133370 -59060294 - MIR SINE MIR -108 154 101 1671 136 28 82 chr1 223134389 223134741 -59058923 + L1MC1 LINE L1 5998 6330 -3 1523 209 13 20 chr1 223135411 223135523 -59058141 + AluJo SINE Alu 1 112 -200 230 0 33 0 chr1 223135523 223135553 -59058111 + (TC)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr1 223135552 223135577 -59058087 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 1523 209 13 20 chr1 223135553 223135765 -59057899 + AluJo SINE Alu 112 299 -13 23 33 0 0 chr1 223136065 223136095 -59057569 + AT_rich Low_complexity Low_complexity 1 30 0 230 281 0 0 chr1 223137337 223137415 -59056249 + (TA)n Simple_repeat Simple_repeat 1 78 0 2132 140 0 0 chr1 223137459 223137766 -59055898 - AluSc SINE Alu -2 307 1 824 184 92 53 chr1 223138645 223138785 -59054879 - U3 snRNA snRNA -2 215 63 2054 157 37 0 chr1 223138785 223139109 -59054555 - MER1B DNA MER1_type -1 336 1 824 184 92 53 chr1 223139109 223139175 -59054489 - U3 snRNA snRNA -154 63 1 2271 74 3 20 chr1 223142051 223142348 -59051316 - AluY SINE Alu -19 292 1 651 319 46 4 chr1 223142596 223142859 -59050805 - MLT1I LTR MaLR -14 395 122 180 354 62 0 chr1 223143205 223143270 -59050394 - L2 LINE L2 -67 3205 3137 391 298 142 9 chr1 223143316 223143541 -59050123 - MIR SINE MIR -13 249 1 401 276 125 72 chr1 223143955 223144234 -59049430 + L3 LINE CR1 1222 1515 -62 1040 207 90 56 chr1 223145694 223146070 -59047594 - MLT1D LTR MaLR -93 412 24 283 313 54 18 chr1 223146123 223146235 -59047429 - L2 LINE L2 -1 3312 3197 225 402 19 19 chr1 223146371 223146478 -59047186 - L2 LINE L2 -2 3270 3164 2454 39 0 32 chr1 223146655 223146963 -59046701 - AluSx SINE Alu -14 298 1 183 204 0 0 chr1 223146994 223147043 -59046621 + (TA)n Simple_repeat Simple_repeat 1 49 0 390 301 9 9 chr1 223147475 223147588 -59046076 - MER81 DNA DNA -1 113 1 25 31 0 0 chr1 223148824 223148856 -59044808 + AT_rich Low_complexity Low_complexity 1 32 0 2262 87 3 0 chr1 223150563 223150849 -59042815 - AluSc SINE Alu -22 287 1 282 360 66 0 chr1 223151495 223151706 -59041958 - L1MC/D LINE L1 -2001 5807 5583 1033 207 67 0 chr1 223151821 223152029 -59041635 + MER58A DNA MER1_type 2 223 -1 2478 193 38 8 chr1 223152087 223152559 -59041105 - MER66B LTR ERV1 0 486 1 1897 247 20 11 chr1 223154291 223154736 -59038928 + LTR40c LTR ERVL 5 453 -12 21 0 0 0 chr1 223154880 223154901 -59038763 + AT_rich Low_complexity Low_complexity 1 21 0 383 236 51 107 chr1 223155481 223155540 -59038124 - L2 LINE L2 -2 3311 3250 850 246 43 0 chr1 223155540 223155751 -59037913 + MER58A DNA MER1_type 1 220 -4 383 236 51 107 chr1 223155751 223155907 -59037757 - L2 LINE L2 -63 3250 3108 468 51 0 0 chr1 223156228 223156287 -59037377 + (CA)n Simple_repeat Simple_repeat 2 60 0 1964 123 87 0 chr1 223156295 223156627 -59037037 - MER46B DNA MER2_type 0 236 1 298 369 44 12 chr1 223156666 223156826 -59036838 - MIR3 SINE MIR -10 198 34 309 269 45 0 chr1 223156900 223156967 -59036697 + MIR SINE MIR 39 108 -100 1952 174 0 0 chr1 223157096 223157407 -59036257 + AluSx SINE Alu 1 311 -1 557 296 175 5 chr1 223157407 223157613 -59036051 + MIR SINE MIR 22 262 0 3497 95 11 21 chr1 223157907 223158434 -59035230 + L1PA13 LINE L1 5638 6159 -4 501 279 20 20 chr1 223161036 223161183 -59032481 + MER5B DNA MER1_type 32 178 0 243 237 40 40 chr1 223162098 223162174 -59031490 - MER5B DNA MER1_type 0 178 103 * 493 306 51 28 chr1 223162173 223162389 -59031275 + MIR SINE MIR 40 260 -2 369 93 0 0 chr1 223162412 223162466 -59031198 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 448 273 162 83 chr1 223165813 223166208 -59027456 + MLT1J1 LTR MaLR 1 426 -20 824 311 72 36 chr1 223166445 223167059 -59026605 + L1MEd LINE L1 90 725 -5394 1157 198 131 30 chr1 223167173 223167502 -59026162 - MLT1A2 LTR MaLR -12 362 1 466 293 62 39 chr1 223167576 223167784 -59025880 + L1MEd LINE L1 916 1128 -4991 1016 129 7 0 chr1 223167789 223167928 -59025736 + AluJb SINE Alu 144 283 -29 369 300 209 9 chr1 223168015 223168225 -59025439 + L1MEd LINE L1 1240 1491 -4819 3579 183 65 43 chr1 223168254 223169141 -59024523 + L1MB2 LINE L1 4854 5720 -451 2132 137 45 31 chr1 223169141 223169500 -59024164 + THE1B LTR MaLR 1 364 0 3579 183 65 43 chr1 223169500 223169623 -59024041 + L1MB2 LINE L1 5720 5839 -332 2994 169 36 2 chr1 223169623 223170151 -59023513 - MER44D DNA MER2_type -4 601 1 3579 183 65 43 chr1 223170151 223170361 -59023303 + L1MB2 LINE L1 5839 6104 -67 1574 101 29 142 chr1 223170481 223170826 -59022838 - MER7A DNA MER2_type -42 304 1 21 57 0 0 chr1 223170949 223170984 -59022680 + AT_rich Low_complexity Low_complexity 1 35 0 436 263 149 14 chr1 223171259 223171540 -59022124 - L1ME3A LINE L1 -329 5841 5523 1594 152 99 0 chr1 223171803 223172066 -59021598 + AluSq SINE Alu 1 289 -24 3817 108 22 35 chr1 223172096 223172200 -59021464 + L1MA3 LINE L1 5684 5788 -517 1674 201 0 6 chr1 223172200 223172514 -59021150 + AluJb SINE Alu 1 312 0 3817 108 22 35 chr1 223172514 223173039 -59020625 + L1MA3 LINE L1 5788 6305 0 5516 132 31 10 chr1 223174935 223175890 -59017774 - L1PA15 LINE L1 -6 6159 5186 2205 118 3 3 chr1 223175890 223176194 -59017470 - AluSx SINE Alu -2 310 7 5516 132 31 10 chr1 223176194 223176280 -59017384 - L1PA15 LINE L1 -979 5186 5103 2095 328 89 16 chr1 223176302 223177441 -59016223 + L2 LINE L2 1843 3105 -208 1497 195 38 4 chr1 223177441 223177708 -59015956 + AluSx SINE Alu 1 276 -36 2095 328 89 16 chr1 223177708 223177914 -59015750 + L2 LINE L2 3105 3295 -18 309 227 180 40 chr1 223178449 223178599 -59015065 + MIR SINE MIR 31 201 -61 903 244 50 13 chr1 223178970 223179208 -59014456 - MIR SINE MIR 0 262 16 291 297 48 37 chr1 223179334 223179462 -59014202 - MIR3 SINE MIR -27 181 49 225 0 0 0 chr1 223180192 223180217 -59013447 + (TG)n Simple_repeat Simple_repeat 2 26 0 1126 214 70 8 chr1 223180771 223181014 -59012650 + MLT2B3 LTR ERVL 1 258 -296 879 172 35 40 chr1 223180981 223181179 -59012485 + MSTD LTR MaLR 200 396 0 * 769 250 124 54 chr1 223181687 223182075 -59011589 - MER57B LTR ERV1 -10 424 10 214 300 43 0 chr1 223184247 223184317 -59009347 - MIR SINE MIR -26 236 164 183 222 0 0 chr1 223184343 223184388 -59009276 - L2 LINE L2 -2 3311 3267 374 170 61 12 chr1 223184403 223184568 -59009096 + (TA)n Simple_repeat Simple_repeat 2 174 0 225 301 108 0 chr1 223184792 223184885 -59008779 - MIR SINE MIR -101 161 59 2161 109 0 17 chr1 223185935 223186228 -59007436 + AluSg SINE Alu 1 288 -22 243 0 0 0 chr1 223186697 223186724 -59006940 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 341 93 0 chr1 223186729 223186858 -59006806 + L2 LINE L2 2919 3059 -213 1838 162 37 20 chr1 223188076 223188427 -59005237 + MLT1A1 LTR MaLR 2 358 -7 282 301 0 14 chr1 223189927 223190000 -59003664 + MER5A DNA MER1_type 116 187 -2 2024 206 20 26 chr1 223191841 223192297 -59001367 + MLT1C LTR MaLR 6 458 -9 826 230 7 0 chr1 223192293 223192445 -59001219 + MER58B DNA MER1_type 189 341 0 * 1440 197 138 29 chr1 223192673 223193252 -59000412 - MER114 LTR ERV 0 648 7 266 324 0 0 chr1 223193513 223193587 -59000077 + MIR3 SINE MIR 122 195 -13 21 36 0 0 chr1 223193901 223193929 -58999735 + AT_rich Low_complexity Low_complexity 1 28 0 184 208 21 0 chr1 223194294 223194342 -58999322 + MER5C DNA MER1_type 118 166 -158 1788 286 88 0 chr1 223194483 223194993 -58998671 - MLT1H1 LTR MaLR 0 555 1 22409 102 13 5 chr1 223195148 223199374 -58994290 + L1PA8 LINE L1 2900 7572 -19 365 298 46 25 chr1 223199556 223199794 -58993870 - L1MEd LINE L1 -2240 3889 3647 1230 159 42 9 chr1 223200345 223200747 -58992917 + LTR54 LTR ERV1 13 510 0 1808 130 15 4 chr1 223200980 223201249 -58992415 - THE1C LTR MaLR 0 375 104 967 236 65 25 chr1 223201254 223201499 -58992165 + L1MC4 LINE L1 6700 6934 -1108 635 281 55 6 chr1 223201499 223201663 -58992001 - MER96 DNA MER1_type -1 174 3 967 236 65 25 chr1 223201663 223201972 -58991692 + L1MC4 LINE L1 6934 7446 -596 1438 166 153 10 chr1 223202017 223202312 -58991352 - MER1B DNA MER1_type 0 337 1 183 42 0 0 chr1 223202351 223202375 -58991289 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 352 248 127 74 chr1 223202438 223202951 -58990713 - L1MEd LINE L1 -2758 3371 2832 279 247 74 12 chr1 223203313 223203394 -58990270 - MLT1J LTR MaLR -423 88 3 796 274 75 26 chr1 223203405 223203901 -58989763 - L1MEd LINE L1 -3311 2818 2299 2043 136 69 17 chr1 223204125 223204471 -58989193 - THE1B LTR MaLR 0 364 1 260 273 81 10 chr1 223205089 223205188 -58988476 - L1MEd LINE L1 -4870 1249 1144 412 292 81 69 chr1 223205214 223205635 -58988029 - L1MEd LINE L1 -5122 997 572 31 0 0 0 chr1 223206415 223206446 -58987218 + AT_rich Low_complexity Low_complexity 1 31 0 434 319 146 23 chr1 223206961 223207262 -58986402 + L2 LINE L2 2967 3304 -9 250 343 39 39 chr1 223207426 223207807 -58985857 - HAL1b LINE L1 -627 1658 330 381 250 44 25 chr1 223209910 223210070 -58983594 + L1MEd LINE L1 3 165 -5954 2101 136 0 0 chr1 223210259 223210554 -58983110 - AluSx SINE Alu -17 295 1 1797 115 96 0 chr1 223211195 223211455 -58982209 - AluSx SINE Alu -27 285 1 602 240 27 23 chr1 223211536 223211772 -58981892 + L1MA10 LINE L1 5943 6334 0 287 222 54 127 chr1 223211764 223212134 -58981530 + L1MC5 LINE L1 7142 7484 -477 * 407 267 31 105 chr1 223212839 223213030 -58980634 - MIR SINE MIR 0 262 86 298 265 98 10 chr1 223213304 223213406 -58980258 + MIR SINE MIR 37 147 -115 2066 187 33 29 chr1 223215140 223215684 -58977980 - MLT2A2 LTR ERVL -12 542 1 187 342 25 38 chr1 223215684 223215763 -58977901 - MER5A DNA MER1_type -110 79 2 501 260 77 32 chr1 223216951 223217197 -58976467 + HAL1b LINE L1 227 483 -865 * 1311 188 269 0 chr1 223217192 223217527 -58976137 + L1P LINE L1 4530 4954 -1192 1071 242 39 52 chr1 223218108 223218700 -58974964 - MER21B LTR ERV1 -188 675 19 340 198 83 31 chr1 223218693 223218789 -58974875 - MER21B LTR ERV1 -751 112 12 * 671 236 156 0 chr1 223219635 223219834 -58973830 - MIR SINE MIR -30 232 3 3387 205 55 1 chr1 223221994 223222764 -58970900 - L1MA9 LINE L1 -783 5363 4553 1621 124 51 0 chr1 223222763 223223037 -58970627 + L1MA9 LINE L1 5360 5647 -665 * 1236 204 134 0 chr1 223223037 223223306 -58970358 - MER7A DNA MER2_type -1 345 43 551 212 40 40 chr1 223223309 223223460 -58970204 + L1MA9 LINE L1 5644 5794 -518 850 153 179 31 chr1 223223741 223223782 -58969882 + L1MA9 LINE L1 5786 5820 -492 2556 74 0 0 chr1 223223782 223224093 -58969571 + AluY SINE Alu 1 311 0 850 153 179 31 chr1 223224093 223224274 -58969390 + L1MA9 LINE L1 5820 6041 -271 785 94 26 0 chr1 223224281 223224398 -58969266 - L1P4 LINE L1 -444 5724 5605 2151 110 94 3 chr1 223224401 223224764 -58968900 + L1PA13 LINE L1 5765 6160 -3 425 171 196 19 chr1 223224770 223224928 -58968736 + L1MA9 LINE L1 6026 6211 -101 562 259 213 9 chr1 223226206 223226403 -58967261 + MER93b LTR ERV1 3 243 -130 407 176 54 0 chr1 223226403 223226477 -58967187 + Tigger7 DNA MER2_type 1 78 -2409 * 975 157 112 22 chr1 223226476 223226699 -58966965 + Tigger7 DNA MER2_type 2345 2587 0 438 242 62 16 chr1 223226699 223226823 -58966841 + MER93b LTR ERV1 239 368 -5 339 331 33 33 chr1 223227236 223227417 -58966247 - MLT1K LTR MaLR -175 413 233 969 170 30 5 chr1 223227675 223227875 -58965789 - L1MB8 LINE L1 0 6178 5974 1547 154 64 59 chr1 223227902 223228291 -58965373 - L1MA10 LINE L1 -29 6305 5915 226 257 14 0 chr1 223229386 223229456 -58964208 + (TTATA)n Simple_repeat Simple_repeat 3 73 0 506 157 0 0 chr1 223230270 223230353 -58963311 + MER58B DNA MER1_type 257 339 -2 229 269 0 0 chr1 223230974 223231026 -58962638 + CT-rich Low_complexity Low_complexity 3 54 0 2157 127 36 30 chr1 223231117 223231479 -58962185 - THE1B LTR MaLR 0 364 1 191 265 0 0 chr1 223232847 223232896 -58960768 + L2 LINE L2 3264 3312 -1 281 354 68 6 chr1 223233015 223233176 -58960488 - MIR SINE MIR 0 262 92 465 313 0 8 chr1 223233207 223233335 -58960329 + L2 LINE L2 3187 3313 0 375 198 10 83 chr1 223233352 223233448 -58960216 + L2 LINE L2 1165 1253 -2061 554 257 188 10 chr1 223233478 223233680 -58959984 - L2 LINE L2 -1093 2221 1984 1027 269 25 66 chr1 223234128 223234570 -58959094 + L2 LINE L2 415 838 -2476 2001 211 147 37 chr1 223234570 223235161 -58958503 - MLT2F LTR ERVL 0 663 8 1376 255 66 62 chr1 223235167 223235731 -58957933 + L2 LINE L2 833 1398 -1916 508 239 0 8 chr1 223235731 223235848 -58957816 - MLT1H LTR MaLR 0 549 434 505 249 110 22 chr1 223235959 223236142 -58957522 - MLT1H LTR MaLR -307 242 1 918 240 18 31 chr1 223236340 223236565 -58957099 + MER58A DNA MER1_type 3 224 0 621 312 11 11 chr1 223236922 223237108 -58956556 - MER5A DNA MER1_type -3 186 1 2173 104 3 7 chr1 223237320 223237618 -58956046 + AluSx SINE Alu 1 297 -15 25 31 0 0 chr1 223237670 223237702 -58955962 + AT_rich Low_complexity Low_complexity 1 32 0 395 302 93 49 chr1 223238828 223239033 -58954631 - MIR SINE MIR -10 252 39 469 231 11 0 chr1 223239481 223239572 -58954092 + MER81 DNA DNA 1 92 -22 1218 207 28 110 chr1 223239582 223239974 -58953690 + MLT1A1 LTR MaLR 1 360 -5 2479 57 0 10 chr1 223241462 223241776 -58951888 + AluY SINE Alu 1 311 0 650 293 48 44 chr1 223241949 223242198 -58951466 - MIR SINE MIR 0 262 13 465 209 29 0 chr1 223242273 223242378 -58951286 + L1ME3A LINE L1 5817 5924 -246 206 130 27 62 chr1 223242395 223242541 -58951123 + (TA)n Simple_repeat Simple_repeat 2 142 0 941 208 50 23 chr1 223242541 223242691 -58950973 + L1ME3A LINE L1 5899 6060 -110 270 0 0 0 chr1 223242691 223242721 -58950943 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 941 208 50 23 chr1 223242721 223242830 -58950834 + L1ME3A LINE L1 6060 6165 -5 2331 102 0 3 chr1 223242891 223243205 -58950459 - AluSq SINE Alu 0 313 1 30 0 0 0 chr1 223247765 223247795 -58945869 + AT_rich Low_complexity Low_complexity 1 30 0 630 297 81 9 chr1 223247801 223248023 -58945641 + MIR SINE MIR 2 239 -23 24 0 0 0 chr1 223248033 223248057 -58945607 + AT_rich Low_complexity Low_complexity 1 24 0 714 238 60 0 chr1 223248786 223248954 -58944710 - MER45A DNA AcHobo 0 178 1 269 309 21 21 chr1 223249765 223249862 -58943802 + MARNA DNA Mariner 75 171 -415 422 337 31 36 chr1 223250097 223250290 -58943374 - MIR3 SINE MIR -9 199 8 1072 313 225 29 chr1 223251447 223254009 -58939655 + L2 LINE L2 207 3312 -1 1158 106 29 34 chr1 223254180 223254387 -58939277 - L1MA8 LINE L1 -2 6289 6084 288 143 20 0 chr1 223254515 223254564 -58939100 - MIR SINE MIR -2 260 211 359 333 48 11 chr1 223255970 223256156 -58937508 + LTR16C LTR ERVL 299 491 0 22 35 0 0 chr1 223256231 223256260 -58937404 + AT_rich Low_complexity Low_complexity 1 29 0 456 235 22 59 chr1 223256451 223256587 -58937077 + LTR16C LTR ERVL 87 217 -274 804 87 47 6 chr1 223256622 223256794 -58936870 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 412 60 67 60 chr1 223256805 223256939 -58936725 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 786 330 28 10 chr1 223256944 223257232 -58936432 + LTR16C LTR ERVL 199 491 0 193 191 64 21 chr1 223259284 223259331 -58934333 + L2 LINE L2 3263 3311 -2 213 372 47 0 chr1 223259563 223259649 -58934015 - L2 LINE L2 0 3272 3183 2113 148 53 49 chr1 223260521 223260953 -58932711 + Tigger2a DNA MER2_type 1 434 0 6771 71 6 0 chr1 223261239 223262301 -58931363 - L1PA7 LINE L1 -20 6134 5069 1742 223 52 24 chr1 223262659 223263117 -58930547 - MER110 LTR ERV1 -20 471 1 284 324 59 28 chr1 223263200 223263555 -58930109 - L1M4 LINE L1 -1156 4990 4625 295 294 97 13 chr1 223263950 223264151 -58929513 - L1M4 LINE L1 -1906 4240 4023 180 77 0 0 chr1 223264958 223264984 -58928680 + (TG)n Simple_repeat Simple_repeat 1 26 0 882 275 65 39 chr1 223265095 223265481 -58928183 + MLT1H LTR MaLR 153 548 -1 2810 233 66 31 chr1 223266168 223267447 -58926217 - L1ME2 LINE L1 -37 6127 4812 3751 127 8 0 chr1 223267681 223268266 -58925398 - L1PA10 LINE L1 -794 5352 4763 5644 102 18 1 chr1 223268275 223269071 -58924593 + L1PA10 LINE L1 5345 6153 -15 187 54 54 0 chr1 223269081 223269118 -58924546 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 216 283 71 53 chr1 223269294 223269407 -58924257 - MIR3 SINE MIR -17 191 77 327 310 54 25 chr1 223272202 223272405 -58921259 + L1ME2 LINE L1 92 300 -6096 348 326 5 41 chr1 223272564 223272782 -58920882 + L1ME2 LINE L1 508 717 -5679 1321 235 113 31 chr1 223272786 223273266 -58920398 - LTR40a LTR ERVL 0 519 1 767 243 32 0 chr1 223273272 223273457 -58920207 - HERVL40 LTR ERVL -21 5509 5319 280 302 74 32 chr1 223273442 223273631 -58920033 - MER89-int LTR ERV1 -289 6512 6316 * 837 289 33 0 chr1 223273844 223274055 -58919609 - HERVL40 LTR ERVL -1136 4394 4177 271 282 90 16 chr1 223274385 223274573 -58919091 + L1ME2 LINE L1 711 912 -5484 1413 309 133 8 chr1 223274622 223275689 -58917975 + L1ME2 LINE L1 1062 2261 -4135 28 29 0 0 chr1 223275698 223275733 -58917931 + AT_rich Low_complexity Low_complexity 1 35 0 344 93 56 9 chr1 223275747 223275854 -58917810 + (TA)n Simple_repeat Simple_repeat 1 112 0 3290 258 86 25 chr1 223276331 223276785 -58916879 + L1ME2 LINE L1 2231 2656 -3747 203 0 37 0 chr1 223276785 223276812 -58916852 + (TA)n Simple_repeat Simple_repeat 2 29 0 3290 258 86 25 chr1 223276812 223277582 -58916082 + L1ME2 LINE L1 2656 3378 -3025 2078 169 29 3 chr1 223277582 223277960 -58915704 - MLT1B LTR MaLR -2 388 1 3290 258 86 25 chr1 223277960 223279198 -58914466 + L1ME2 LINE L1 3378 4539 -1864 327 49 0 0 chr1 223279198 223279239 -58914425 + (CA)n Simple_repeat Simple_repeat 2 42 0 3290 258 86 25 chr1 223279239 223279268 -58914396 + L1ME2 LINE L1 4539 4565 -1838 411 56 0 0 chr1 223279268 223279322 -58914342 + (TA)n Simple_repeat Simple_repeat 1 54 0 3290 258 86 25 chr1 223279322 223279376 -58914288 + L1ME2 LINE L1 4565 4614 -1789 1718 188 0 7 chr1 223279376 223279669 -58913995 + AluJb SINE Alu 1 291 -21 3290 258 86 25 chr1 223279669 223280874 -58912790 + L1ME2 LINE L1 4614 6400 -3 289 304 35 9 chr1 223280945 223281060 -58912604 + MLT1I LTR MaLR 60 177 -232 316 242 188 0 chr1 223281074 223281202 -58912462 + L1ME1 LINE L1 6010 6161 -5 324 121 69 17 chr1 223281590 223281648 -58912016 - L1ME LINE L1 -363 5803 5743 26 0 0 0 chr1 223281690 223281716 -58911948 + AT_rich Low_complexity Low_complexity 1 26 0 694 281 42 23 chr1 223281884 223282101 -58911563 + MIR SINE MIR 4 224 -38 2194 100 0 0 chr1 223283726 223284005 -58909659 + AluSc SINE Alu 1 279 -30 192 135 0 0 chr1 223284005 223284042 -58909622 + (G)n Simple_repeat Simple_repeat 1 37 0 22 35 0 0 chr1 223284636 223284665 -58908999 + AT_rich Low_complexity Low_complexity 1 29 0 1036 78 0 0 chr1 223284893 223285022 -58908642 + AluSc SINE Alu 3 131 -178 1754 211 16 39 chr1 223285438 223285874 -58907790 - MLT1C LTR MaLR -41 426 1 1662 148 137 58 chr1 223286478 223286909 -58906755 + MLT1C LTR MaLR 3 467 0 237 203 14 29 chr1 223286957 223286974 -58906690 + (TATATG)n Simple_repeat Simple_repeat 2 18 -51 1903 151 3 0 chr1 223286974 223287258 -58906406 - AluSx SINE Alu -27 285 1 237 203 14 29 chr1 223287258 223287309 -58906355 + (TATATG)n Simple_repeat Simple_repeat 18 69 0 360 272 32 16 chr1 223288969 223289094 -58904570 + MER94 DNA DNA 8 134 0 743 270 50 62 chr1 223289330 223289667 -58903997 + LTR16B LTR ERVL 1 333 -131 2001 215 45 17 chr1 223289764 223290247 -58903417 + MLT1D LTR MaLR 1 497 -8 238 235 20 0 chr1 223290259 223290310 -58903354 + LTR16B LTR ERVL 413 464 0 23 0 0 0 chr1 223290411 223290434 -58903230 + AT_rich Low_complexity Low_complexity 1 23 0 298 322 90 80 chr1 223291552 223291841 -58901823 - L2 LINE L2 -84 3188 2897 469 328 148 41 chr1 223292320 223292789 -58900875 - L2 LINE L2 -590 2724 2307 739 267 61 8 chr1 223292789 223293036 -58900628 - MIR SINE MIR -2 260 1 469 328 148 41 chr1 223293036 223293329 -58900335 - L2 LINE L2 -1007 2307 1880 396 326 91 4 chr1 223293435 223293665 -58899999 + MLT1I LTR MaLR 9 258 -151 2145 138 30 25 chr1 223294026 223294388 -58899276 - THE1B LTR MaLR 0 364 1 11423 96 21 0 chr1 223294388 223295935 -58897729 - THE1B-int LTR MaLR 0 1580 2 2176 123 33 19 chr1 223295936 223296295 -58897369 - THE1B LTR MaLR 0 364 1 883 222 35 15 chr1 223296319 223296522 -58897142 + Tigger3(Golem) DNA MER2_type 1 207 -2822 * 3519 153 14 28 chr1 223296514 223297169 -58896495 + Tigger3(Golem) DNA MER2_type 2382 3027 -2 216 0 0 0 chr1 223297727 223297751 -58895913 + (TG)n Simple_repeat Simple_repeat 1 24 0 306 206 19 56 chr1 223298666 223298773 -58894891 + MER53 DNA DNA 1 103 -86 616 256 158 78 chr1 223299810 223300157 -58893507 - MLT1L LTR MaLR -6 609 235 5528 159 31 14 chr1 223300614 223301936 -58891728 + L1MA4 LINE L1 4964 6295 -5 338 153 51 61 chr1 223302599 223302697 -58890967 + L1MA9 LINE L1 6211 6307 -5 26 30 0 0 chr1 223303515 223303548 -58890116 + AT_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr1 223303710 223303754 -58889910 + AT_rich Low_complexity Low_complexity 1 44 0 1510 189 42 23 chr1 223305569 223305875 -58887789 - AluJo SINE Alu 0 312 1 674 230 61 89 chr1 223305974 223306316 -58887348 - LTR38 LTR ERV1 -9 547 232 438 304 78 27 chr1 223306551 223306844 -58886820 + MLT1G LTR MaLR 26 328 -227 1307 228 39 21 chr1 223306896 223307230 -58886434 + MLT1A1 LTR MaLR 1 340 -25 884 338 169 18 chr1 223307814 223308442 -58885222 + L3 LINE CR1 844 1566 -11 762 256 110 4 chr1 223309093 223309320 -58884344 + MIR SINE MIR 12 262 0 188 119 0 24 chr1 223309978 223310020 -58883644 + (TA)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr1 223310117 223310141 -58883523 + (T)n Simple_repeat Simple_repeat 1 24 0 1297 193 59 93 chr1 223310222 223310585 -58883079 - MLT1C LTR MaLR 0 467 118 2244 120 0 0 chr1 223310585 223310884 -58882780 - AluSx SINE Alu -13 299 1 1297 193 59 93 chr1 223310884 223310929 -58882735 - MLT1C LTR MaLR -349 118 73 231 391 38 15 chr1 223311644 223311777 -58881887 + L2 LINE L2 3128 3263 -9 1832 169 14 8 chr1 223312352 223312708 -58880956 + L1MA7 LINE L1 5930 6287 -4 360 43 0 0 chr1 223312878 223312924 -58880740 + (CA)n Simple_repeat Simple_repeat 2 47 0 345 228 69 50 chr1 223314216 223314317 -58879347 + L3 LINE CR1 448 550 -1027 196 267 25 92 chr1 223314459 223314579 -58879085 - MIR SINE MIR -16 246 135 21 36 0 0 chr1 223314752 223314780 -58878884 + AT_rich Low_complexity Low_complexity 1 28 0 4334 60 0 9 chr1 223314781 223315345 -58878319 - L1PA8 LINE L1 -3 6169 5611 219 54 18 89 chr1 223315354 223315410 -58878254 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 2510 95 21 5 chr1 223315416 223316029 -58877635 + L1P3 LINE L1 5003 5621 -551 928 233 83 7 chr1 223316947 223317248 -58876416 + MER33 DNA MER1_type 1 324 0 23 54 0 0 chr1 223318171 223318208 -58875456 + AT_rich Low_complexity Low_complexity 1 37 0 1412 280 25 8 chr1 223318392 223318756 -58874908 - LTR16A LTR ERVL -21 429 60 257 330 59 17 chr1 223318820 223318938 -58874726 - L2 LINE L2 0 3272 3150 * 975 292 76 61 chr1 223318909 223319303 -58874361 + L2 LINE L2 865 1264 -2050 865 261 25 0 chr1 223319401 223319600 -58874064 + MER63A DNA MER1_type 7 210 0 1129 286 58 37 chr1 223319615 223320092 -58873572 + L2 LINE L2 1326 1816 -1498 1664 87 4 40 chr1 223320092 223320344 -58873320 - L1PA10 LINE L1 -8 6160 5918 1129 286 58 37 chr1 223320344 223320380 -58873284 + L2 LINE L2 1816 1850 -1464 181 326 23 23 chr1 223320512 223320598 -58873066 - L2 LINE L2 -946 2368 2283 379 243 66 111 chr1 223320600 223320685 -58872979 - MIR SINE MIR -70 192 105 221 0 35 0 chr1 223320685 223320714 -58872950 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2353 76 0 3 chr1 223320718 223321006 -58872658 - AluY SINE Alu -24 287 1 379 243 66 111 chr1 223321006 223321096 -58872568 - MIR SINE MIR -160 102 20 406 241 30 38 chr1 223321125 223321258 -58872406 + L2 LINE L2 1866 1997 -1317 938 304 93 26 chr1 223321260 223321912 -58871752 + L2 LINE L2 2607 3311 -2 322 155 52 0 chr1 223321967 223322025 -58871639 - MER63 DNA MER1_type -375 687 1 7150 46 7 6 chr1 223322559 223323829 -58869835 + L1PA5 LINE L1 4880 6150 -4 213 360 0 0 chr1 223324295 223324381 -58869283 - L2 LINE L2 -946 2368 2283 * 499 274 96 0 chr1 223324373 223324530 -58869134 - MIR SINE MIR -57 205 34 317 43 21 0 chr1 223324531 223324578 -58869086 + (CA)n Simple_repeat Simple_repeat 2 49 0 420 346 87 39 chr1 223324590 223324633 -58869031 - L2 LINE L2 -1059 2255 2216 1205 194 41 107 chr1 223324633 223325024 -58868640 - MLT1A1 LTR MaLR 0 365 1 420 346 87 39 chr1 223325024 223325576 -58868088 - L2 LINE L2 -1098 2216 1631 455 0 0 18 chr1 223326423 223326479 -58867185 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 1689 148 44 78 chr1 223328013 223328180 -58865484 - THE1C LTR MaLR 0 375 204 535 0 0 28 chr1 223328180 223328251 -58865413 - L1PA3 LINE L1 -1 6154 6086 1689 148 44 78 chr1 223328251 223328469 -58865195 - THE1C LTR MaLR -171 204 3 1998 188 34 3 chr1 223328498 223328881 -58864783 + MSTD LTR MaLR 1 395 -1 751 228 0 19 chr1 223329126 223329284 -58864380 - MIR SINE MIR -29 233 79 200 317 67 0 chr1 223330505 223330565 -58863099 + MIR SINE MIR 49 112 -150 353 329 114 18 chr1 223331230 223331458 -58862206 - MIR SINE MIR 0 262 13 2287 79 0 16 chr1 223334000 223334305 -58859359 - AluY SINE Alu -11 300 1 13603 156 30 9 chr1 223335172 223336075 -58857589 - Tigger1 DNA MER2_type -1 2417 1534 2514 139 16 12 chr1 223336075 223336214 -58857450 - MER57B LTR ERV1 0 434 297 252 0 0 0 chr1 223336214 223336242 -58857422 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2514 139 16 12 chr1 223336242 223336534 -58857130 - MER57B LTR ERV1 -137 297 1 13603 156 30 9 chr1 223336534 223337998 -58855666 - Tigger1 DNA MER2_type -884 1534 1 973 317 87 43 chr1 223338241 223338828 -58854836 + MLT1L LTR MaLR 1 613 -2 353 241 113 50 chr1 223338833 223338974 -58854690 - MER5A DNA MER1_type -22 167 18 1491 228 84 29 chr1 223340097 223340575 -58853089 + MLT1D LTR MaLR 2 505 0 1470 191 33 60 chr1 223340633 223340999 -58852665 - MLT1A1 LTR MaLR 0 365 10 436 286 92 50 chr1 223341215 223341691 -58851973 + L1MEd LINE L1 598 1093 -5026 8927 198 47 14 chr1 223341694 223344587 -58849077 + L1PB1 LINE L1 2787 5804 -347 2434 105 27 19 chr1 223344587 223344957 -58848707 + THE1C LTR MaLR 3 375 0 8927 198 47 14 chr1 223344957 223345312 -58848352 + L1PB1 LINE L1 5804 6146 -5 265 226 29 29 chr1 223345742 223345844 -58847820 + L1MEd LINE L1 992 1093 -5026 * 567 216 14 7 chr1 223345843 223345982 -58847682 + L1MEd LINE L1 2766 2905 -3224 1012 88 0 29 chr1 223345982 223346118 -58847546 + AluY SINE Alu 1 132 -179 1537 165 4 0 chr1 223346158 223346431 -58847233 + L1PA16 LINE L1 4935 5208 -938 5841 107 36 1 chr1 223346431 223347410 -58846254 + L1PA10 LINE L1 5153 6164 -4 21 0 0 0 chr1 223347627 223347648 -58846016 + AT_rich Low_complexity Low_complexity 1 21 0 991 300 124 28 chr1 223348498 223349611 -58844053 - L1MEc LINE L1 -3734 3207 1985 366 306 73 57 chr1 223349748 223350062 -58843602 - L1MEc LINE L1 -4995 1428 1110 4038 154 5 3 chr1 223350407 223351068 -58842596 + L1PA16 LINE L1 5495 6156 -10 1664 148 41 47 chr1 223351343 223351660 -58842004 - MER47A DNA MER2_type -51 315 1 2707 184 18 27 chr1 223351743 223351876 -58841788 - L1PA16 LINE L1 -7 6159 6026 1410 53 0 0 chr1 223351876 223352085 -58841579 + (TTCC)n Simple_repeat Simple_repeat 1 209 0 2294 61 27 0 chr1 223352089 223352386 -58841278 - AluY SINE Alu -6 305 1 2707 184 18 27 chr1 223352386 223352807 -58840857 - L1PA16 LINE L1 -143 6023 5604 210 303 9 73 chr1 223352809 223352918 -58840746 - L2 LINE L2 -25 3288 3187 927 298 25 4 chr1 223353521 223353763 -58839901 - L3 LINE CR1 -4 1573 1327 1761 124 27 4 chr1 223354353 223354611 -58839053 + AluSx SINE Alu 1 264 -48 30 0 0 0 chr1 223354638 223354668 -58838996 + AT_rich Low_complexity Low_complexity 1 30 0 1949 147 3 7 chr1 223354671 223354971 -58838693 + AluSx SINE Alu 6 304 -8 7143 45 6 3 chr1 223355461 223356375 -58837289 + L1PA5 LINE L1 5233 6148 -6 22 35 0 0 chr1 223357173 223357202 -58836462 + AT_rich Low_complexity Low_complexity 1 29 0 297 341 0 15 chr1 223358445 223358577 -58835087 + CT-rich Low_complexity Low_complexity 4 133 0 1756 155 28 103 chr1 223359017 223359443 -58834221 - MSTD LTR MaLR 0 396 3 297 177 0 32 chr1 223359459 223359521 -58834143 - MSTD-int LTR MaLR -14 1721 1662 * 3340 234 79 47 chr1 223359512 223360587 -58833077 - MSTD-int LTR MaLR -625 1110 2 385 127 42 0 chr1 223360589 223360660 -58833004 - MSTD LTR MaLR 0 396 323 904 167 161 0 chr1 223360668 223360842 -58832822 - AluJo SINE Alu -16 296 95 841 192 133 79 chr1 223360843 223361160 -58832504 - MSTD LTR MaLR -62 334 1 24 0 0 0 chr1 223361876 223361900 -58831764 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr1 223361984 223362012 -58831652 + AT_rich Low_complexity Low_complexity 1 28 0 1355 211 48 25 chr1 223362128 223362484 -58831180 - MLT1A1 LTR MaLR 0 365 2 304 306 134 64 chr1 223362823 223363137 -58830527 + L1MEd LINE L1 3 338 -5781 703 256 65 92 chr1 223363155 223363913 -58829751 + L1M4 LINE L1 4427 5163 -983 2420 90 68 8 chr1 223363913 223364267 -58829397 + THE1C LTR MaLR 1 375 0 703 256 65 92 chr1 223364267 223364322 -58829342 + L1M4 LINE L1 5163 5218 -928 479 115 26 0 chr1 223364902 223364980 -58828684 + MADE1 DNA Mariner 1 80 0 623 322 11 35 chr1 223366317 223366578 -58827086 - MLT1I LTR MaLR -64 345 91 327 320 82 0 chr1 223367039 223367186 -58826478 - Tigger8 DNA MER2_type -500 166 8 312 70 0 0 chr1 223367191 223367234 -58826430 + (TG)n Simple_repeat Simple_repeat 2 44 0 1930 124 3 18 chr1 223367246 223367528 -58826136 - AluSc SINE Alu -31 278 1 22 80 0 0 chr1 223367976 223368026 -58825638 + AT_rich Low_complexity Low_complexity 1 50 0 649 294 6 6 chr1 223368070 223368250 -58825414 + L2 LINE L2 2410 2589 -725 2059 127 6 13 chr1 223369299 223369613 -58824051 + AluSx SINE Alu 1 312 0 207 0 0 0 chr1 223370514 223370537 -58823127 + (CA)n Simple_repeat Simple_repeat 2 24 0 492 331 7 7 chr1 223371207 223371346 -58822318 + MIR SINE MIR 8 146 -116 291 28 0 0 chr1 223371357 223371393 -58822271 + (CA)n Simple_repeat Simple_repeat 1 36 0 26 30 0 0 chr1 223371532 223371565 -58822099 + AT_rich Low_complexity Low_complexity 1 33 0 356 243 113 103 chr1 223371755 223372084 -58821580 - L1MC4a LINE L1 -1942 5866 5535 1837 181 85 149 chr1 223372102 223373043 -58820621 + LTR28 LTR ERV1 1 1020 0 2080 129 137 13 chr1 223373408 223373789 -58819875 + MSTA LTR MaLR 1 428 0 255 133 0 0 chr1 223374009 223374054 -58819610 + (TG)n Simple_repeat Simple_repeat 2 46 0 1151 170 93 111 chr1 223374059 223374412 -58819252 - MER7A DNA MER2_type 0 346 2 271 165 38 25 chr1 223375770 223375849 -58817815 + (CATATA)n Simple_repeat Simple_repeat 6 85 0 903 228 11 0 chr1 223375927 223376107 -58817557 - MER5A DNA MER1_type -5 184 3 181 388 35 17 chr1 223376324 223376440 -58817224 - MIR SINE MIR -125 137 20 1788 107 0 8 chr1 223377029 223377282 -58816382 + AluSx SINE Alu 50 300 -12 263 148 0 16 chr1 223379101 223379162 -58814502 + (TCCC)n Simple_repeat Simple_repeat 2 61 0 767 230 0 25 chr1 223379376 223379537 -58814127 + MER5A DNA MER1_type 7 163 -26 183 42 0 0 chr1 223380688 223380712 -58812952 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 2139 90 0 4 chr1 223380712 223380991 -58812673 - AluY SINE Alu -32 279 2 2800 10 0 0 chr1 223381148 223381459 -58812205 + AluYa5 SINE Alu 1 311 0 309 26 0 0 chr1 223381502 223381540 -58812124 + (CA)n Simple_repeat Simple_repeat 1 38 0 2141 155 5 16 chr1 223382371 223382739 -58810925 + THE1B LTR MaLR 1 364 0 182 146 0 24 chr1 223382752 223382793 -58810871 + (GAAAA)n Simple_repeat Simple_repeat 3 42 0 186 146 98 0 chr1 223382838 223382879 -58810785 + L2 LINE L2 2447 2491 -823 213 329 57 21 chr1 223385218 223385358 -58808306 + MIR SINE MIR 66 210 -52 4269 6 0 0 chr1 223386263 223386744 -58806920 + L1HS LINE L1 5672 6152 -3 198 71 0 0 chr1 223387554 223387582 -58806082 + (TC)n Simple_repeat Simple_repeat 1 28 0 221 160 0 20 chr1 223388561 223388611 -58805053 + (TA)n Simple_repeat Simple_repeat 2 50 0 310 337 0 0 chr1 223388615 223388704 -58804960 - L1MC4 LINE L1 -1339 6703 6615 2121 121 3 0 chr1 223388705 223389003 -58804661 - AluSg SINE Alu -11 299 1 327 340 107 0 chr1 223389155 223389314 -58804350 + MIR SINE MIR 46 221 -41 486 154 22 0 chr1 223389386 223389477 -58804187 - L1MA10 LINE L1 -7 6327 6235 5630 109 10 8 chr1 223389605 223390910 -58802754 - L1PA10 LINE L1 0 6168 4892 823 75 0 0 chr1 223390908 223391028 -58802636 - L1PA5 LINE L1 -5072 1074 955 * 33358 53 8 1 chr1 223391016 223396058 -58797606 + L1PA5 LINE L1 1074 6150 -4 10161 134 6 4 chr1 223396068 223397683 -58795981 - L1PA10 LINE L1 -1240 4906 3290 348 24 0 0 chr1 223397720 223397761 -58795903 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 24 32 0 0 chr1 223398248 223398279 -58795385 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr1 223398717 223398741 -58794923 + AT_rich Low_complexity Low_complexity 1 24 0 1940 119 3 31 chr1 223398845 223399195 -58794469 + AluSx SINE Alu 1 342 0 2562 172 42 8 chr1 223399614 223400091 -58793573 + LOR1a LTR ERV1 1 493 -4 279 143 0 0 chr1 223400091 223400133 -58793531 + LOR1a LTR ERV1 456 497 0 2257 153 36 24 chr1 223400133 223400545 -58793119 + LOR1a-int LTR ERV1 1 417 -7703 * 28513 126 47 29 chr1 223400516 223403510 -58790154 + LOR1a-int LTR ERV1 207 3148 -4972 6961 137 30 35 chr1 223403510 223404795 -58788869 - MER52C LTR ERV1 0 1278 1 28513 126 47 29 chr1 223404795 223406425 -58787239 + LOR1a-int LTR ERV1 3148 4934 -3186 1712 145 50 63 chr1 223406425 223406581 -58787083 + THE1C LTR MaLR 1 158 -217 2574 47 0 0 chr1 223406581 223406881 -58786783 - AluY SINE Alu -10 301 2 1712 145 50 63 chr1 223406881 223407104 -58786560 + THE1C LTR MaLR 158 375 0 28513 126 47 29 chr1 223407104 223407706 -58785958 + LOR1a-int LTR ERV1 4934 5524 -2596 1746 111 11 4 chr1 223407696 223407958 -58785706 + LOR1a-int LTR ERV1 5801 6064 -2056 * 522 133 11 22 chr1 223407957 223408047 -58785617 + LOR1a-int LTR ERV1 8030 8118 -2 * 2913 166 18 2 chr1 223408052 223408541 -58785123 + LOR1a LTR ERV1 1 497 0 31 44 0 0 chr1 223409825 223409870 -58783794 + AT_rich Low_complexity Low_complexity 1 45 0 200 229 21 0 chr1 223410968 223411016 -58782648 + L2 LINE L2 3264 3312 -1 258 326 75 50 chr1 223411465 223411704 -58781960 - MIR SINE MIR -1 261 17 323 340 0 0 chr1 223412376 223412479 -58781185 - MIR SINE MIR -121 141 39 225 0 0 0 chr1 223415627 223415652 -58778012 + (TA)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr1 223417437 223417466 -58776198 + AT_rich Low_complexity Low_complexity 1 29 0 1187 198 92 55 chr1 223417520 223417815 -58775849 + MER2 DNA MER2_type 3 313 -32 2172 126 22 30 chr1 223417815 223418181 -58775483 - THE1B LTR MaLR -1 363 1 1187 198 92 55 chr1 223418181 223418213 -58775451 + MER2 DNA MER2_type 313 342 -3 227 311 115 16 chr1 223418301 223418423 -58775241 + L2 LINE L2 3139 3272 0 467 278 76 45 chr1 223418617 223418815 -58774849 + LTR67 LTR ERVL 352 555 -2 191 282 59 24 chr1 223419041 223419126 -58774538 - MIR SINE MIR -51 211 124 32 43 0 0 chr1 223419462 223419508 -58774156 + AT_rich Low_complexity Low_complexity 1 46 0 27 81 0 0 chr1 223423441 223423503 -58770161 + AT_rich Low_complexity Low_complexity 1 62 0 503 139 0 0 chr1 223423558 223423644 -58770020 - AluS SINE Alu -3 306 221 795 227 56 5 chr1 223423644 223423930 -58769734 + LTR52 LTR ERVL 76 420 -1 1650 133 4 4 chr1 223424260 223424542 -58769122 + AluSx SINE Alu 48 329 0 212 311 107 0 chr1 223424935 223425038 -58768626 + L2 LINE L2 2274 2387 -927 819 217 46 10 chr1 223425226 223425588 -58768076 - LTR52 LTR ERVL -1 420 1 294 373 99 25 chr1 223425588 223425910 -58767754 + L2 LINE L2 2632 2977 -337 2528 216 72 47 chr1 223425943 223426864 -58766800 - L1ME1 LINE L1 -4 6162 5206 684 275 32 42 chr1 223427088 223427372 -58766292 - L1MCc LINE L1 -5958 465 185 1985 105 29 7 chr1 223427634 223427948 -58765716 - AluSg SINE Alu 0 321 2 416 111 28 0 chr1 223428071 223428143 -58765521 + L1PB3 LINE L1 6073 6146 -8 25 31 0 0 chr1 223430490 223430522 -58763142 + AT_rich Low_complexity Low_complexity 1 32 0 626 264 43 4 chr1 223430670 223430905 -58762759 - MER113 DNA MER1_type? -277 244 1 200 301 151 42 chr1 223431226 223431392 -58762272 + MIR SINE MIR 21 204 -58 216 67 0 0 chr1 223431411 223431441 -58762223 + (TG)n Simple_repeat Simple_repeat 1 30 0 229 277 89 30 chr1 223432794 223432895 -58760769 + L2 LINE L2 1179 1285 -2029 322 292 87 36 chr1 223432970 223433165 -58760499 + MLT1K LTR MaLR 357 561 -27 289 385 43 13 chr1 223433936 223434167 -58759497 + L2 LINE L2 2138 2375 -939 1117 209 83 7 chr1 223434481 223434782 -58758882 + MER33 DNA MER1_type 1 324 0 304 340 0 10 chr1 223435116 223435213 -58758451 + L2 LINE L2 3203 3298 -15 431 198 117 10 chr1 223435593 223435739 -58757925 + MLT1H LTR MaLR 241 549 0 2229 203 19 46 chr1 223435834 223436356 -58757308 + MER67D LTR ERV1 2 509 -5 227 365 69 6 chr1 223436549 223436708 -58756956 - MIR SINE MIR -10 252 84 1471 114 5 12 chr1 223437349 223437586 -58756078 - pTR5 LTR ERV1 -84 696 171 395 194 31 20 chr1 223437588 223437686 -58755978 - LTR30 LTR ERV1 -80 642 544 5421 135 166 28 chr1 223437689 223438812 -58754852 - pTR5 LTR ERV1 -417 2021 743 190 104 21 21 chr1 223438938 223438986 -58754678 + (TA)n Simple_repeat Simple_repeat 2 49 0 1620 173 18 0 chr1 223439039 223439317 -58754347 + MER49 LTR ERV1 3 285 -638 1577 200 12 21 chr1 223439388 223439728 -58753936 + MER4D LTR ERV1 550 886 -17 254 347 126 41 chr1 223440014 223440285 -58753379 - L2 LINE L2 -343 2971 2678 624 291 78 16 chr1 223440354 223440660 -58753004 + L1MCc LINE L1 72 396 -6027 354 291 103 24 chr1 223440948 223441113 -58752551 + L1MCc LINE L1 824 1001 -5422 2429 162 5 30 chr1 223441122 223441561 -58752103 + MSTA LTR MaLR 1 428 0 297 0 0 0 chr1 223441656 223441689 -58751975 + (CA)n Simple_repeat Simple_repeat 2 34 0 1461 285 83 24 chr1 223441825 223443147 -58750517 + L1MCc LINE L1 1330 2894 -4228 918 261 43 13 chr1 223443166 223443616 -58750048 + L1MCc LINE L1 2932 3370 -3571 1832 254 51 9 chr1 223443671 223443991 -58749673 + L1M4 LINE L1 4616 4921 -1225 2347 88 7 0 chr1 223443991 223444287 -58749377 + AluSp SINE Alu 1 298 -15 1832 254 51 9 chr1 223444287 223444595 -58749069 + L1M4 LINE L1 4921 5270 -876 496 146 177 0 chr1 223444596 223444692 -58748972 - L1MC1 LINE L1 -178 6155 6043 1164 175 63 5 chr1 223444692 223444898 -58748766 - AluJo SINE Alu -20 292 75 1990 126 0 11 chr1 223444908 223445214 -58748450 - AluSx SINE Alu 0 304 2 4112 170 23 3 chr1 223445218 223445970 -58747694 - L1MC1 LINE L1 -280 6053 5287 192 77 0 0 chr1 223446051 223446077 -58747587 + (GA)n Simple_repeat Simple_repeat 1 26 0 3603 205 27 107 chr1 223446278 223447480 -58746184 - MER52A LTR ERV1 0 1755 651 21 36 0 0 chr1 223447604 223447632 -58746032 + AT_rich Low_complexity Low_complexity 1 28 0 3412 134 22 30 chr1 223448000 223448597 -58745067 - MER50 LTR ERV1 -142 592 1 1975 135 9 30 chr1 223448674 223449304 -58744360 + MER4A LTR ERV1 89 664 0 2122 191 89 33 chr1 223449454 223450014 -58743650 + LTR49 LTR ERV1 1 572 -23 1937 237 100 65 chr1 223450018 223450477 -58743187 + LTR49-int LTR ERV1 18 459 -5804 2201 116 0 0 chr1 223450477 223450779 -58742885 - AluSc SINE Alu -7 302 1 1937 237 100 65 chr1 223450779 223451393 -58742271 + LTR49-int LTR ERV1 459 1347 -4916 3449 212 89 52 chr1 223451399 223454054 -58739610 + LTR49-int LTR ERV1 1454 4405 -1858 189 0 0 0 chr1 223454055 223454076 -58739588 + (TA)n Simple_repeat Simple_repeat 2 22 0 8711 150 51 20 chr1 223454534 223456433 -58737231 + LTR49-int LTR ERV1 4596 6331 0 1549 194 48 129 chr1 223456433 223457055 -58736609 + LTR49 LTR ERV1 1 572 -23 14120 173 32 16 chr1 223457615 223459303 -58734361 + L1MA3 LINE L1 11 1752 -5813 387 0 0 0 chr1 223459303 223459346 -58734318 + (CA)n Simple_repeat Simple_repeat 2 44 0 14120 173 32 16 chr1 223459346 223460131 -58733533 + L1MA3 LINE L1 1752 2523 -5042 870 185 11 0 chr1 223460127 223460305 -58733359 + L1MA3 LINE L1 3724 3903 -3662 * 405 164 0 0 chr1 223460314 223460387 -58733277 + (CA)n Simple_repeat Simple_repeat 2 74 0 369 225 0 0 chr1 223460418 223460507 -58733157 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 13023 179 27 8 chr1 223460527 223461186 -58732478 + L1MA3 LINE L1 3935 4580 -3144 1656 173 3 45 chr1 223461186 223461499 -58732165 + AluSx SINE Alu 6 305 -7 13023 179 27 8 chr1 223461499 223462600 -58731064 + L1MA3 LINE L1 4580 5658 -2066 2148 131 7 0 chr1 223462600 223462905 -58730759 - AluSq SINE Alu -6 307 1 13023 179 27 8 chr1 223462905 223464857 -58728807 + L1MA3 LINE L1 5658 7723 -1 2633 231 51 11 chr1 223466078 223466868 -58726796 + L1ME LINE L1 4493 5326 -840 3570 28 12 0 chr1 223466868 223467300 -58726364 + L1PA4 LINE L1 5718 6154 -1 2633 231 51 11 chr1 223467300 223467562 -58726102 + L1ME LINE L1 5326 5576 -590 2412 57 0 17 chr1 223467667 223467968 -58725696 - AluY SINE Alu -15 296 1 784 187 29 0 chr1 223467968 223468107 -58725557 + MER96 DNA MER1_type? 33 175 0 1927 164 58 122 chr1 223468298 223468846 -58724818 - MLT2B2 LTR ERVL -2 513 1 21 36 0 0 chr1 223469004 223469032 -58724632 + AT_rich Low_complexity Low_complexity 1 28 0 214 283 11 65 chr1 223469059 223469151 -58724513 - MIR SINE MIR -68 194 108 2074 127 3 3 chr1 223469376 223469667 -58723997 - AluSg SINE Alu -19 291 1 1124 148 16 11 chr1 223470207 223470390 -58723274 + MLT1A1 LTR MaLR 11 194 -171 258 247 0 32 chr1 223470402 223470495 -58723169 - L1MC4 LINE L1 -1339 6703 6614 219 133 0 0 chr1 223470506 223470551 -58723113 + (TA)n Simple_repeat Simple_repeat 1 45 0 919 156 0 0 chr1 223470561 223470702 -58722962 + MLT1A1 LTR MaLR 223 363 -2 21 0 0 0 chr1 223471258 223471279 -58722385 + AT_rich Low_complexity Low_complexity 1 21 0 1691 171 14 0 chr1 223472912 223473193 -58720471 - AluJb SINE Alu -5 307 23 28 29 0 0 chr1 223473475 223473510 -58720154 + AT_rich Low_complexity Low_complexity 1 35 0 434 333 40 20 chr1 223473668 223473869 -58719795 + L3 LINE CR1 457 661 -916 230 0 33 0 chr1 223473965 223473995 -58719669 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 600 324 29 69 chr1 223474118 223474464 -58719200 + L3 LINE CR1 1065 1396 -181 1409 300 68 21 chr1 223475109 223475625 -58718039 - MLT1H LTR MaLR -5 544 5 1416 269 122 13 chr1 223475976 223476511 -58717153 + MLT1E LTR MaLR 1 593 0 187 241 36 60 chr1 223476589 223476672 -58716992 + MIR SINE MIR 122 202 -60 7354 34 5 1 chr1 223477507 223479070 -58714594 + L1PA4 LINE L1 4585 6149 -6 256 224 78 78 chr1 223480788 223480904 -58712760 + MIR SINE MIR 147 262 0 2007 150 0 0 chr1 223480980 223481287 -58712377 - AluSx SINE Alu 0 307 1 268 191 24 24 chr1 223483487 223483571 -58710093 + CT-rich Low_complexity Low_complexity 1 84 0 707 299 70 31 chr1 223484104 223484183 -58709481 - MLT1J1 LTR MaLR -40 406 332 1557 184 50 138 chr1 223484183 223484742 -58708922 - MER67D LTR ERV1 -4 510 1 707 299 70 31 chr1 223484742 223485050 -58708614 - MLT1J1 LTR MaLR -114 332 4 309 320 106 75 chr1 223486572 223486959 -58706705 + HAL1 LINE L1 23 421 -2086 4887 145 16 31 chr1 223486963 223487146 -58706518 + L1PA16 LINE L1 5141 5325 -841 2158 109 7 0 chr1 223487146 223487439 -58706225 + AluSg SINE Alu 1 295 -15 4887 145 16 31 chr1 223487439 223488295 -58705369 + L1PA16 LINE L1 5325 6166 0 1303 160 18 0 chr1 223488552 223488771 -58704893 + AluJo SINE Alu 84 306 -6 462 36 0 0 chr1 223490432 223490488 -58703176 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 26 0 0 0 chr1 223491421 223491447 -58702217 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr1 223491654 223491682 -58701982 + AT_rich Low_complexity Low_complexity 1 28 0 1769 147 72 93 chr1 223491702 223491905 -58701759 + Tigger2a DNA MER2_type 1 207 -2501 2300 78 10 0 chr1 223491905 223492214 -58701450 - AluSq SINE Alu -1 312 1 1769 147 72 93 chr1 223492214 223492453 -58701211 + Tigger2a DNA MER2_type 207 434 0 419 342 145 43 chr1 223492704 223493373 -58700291 + L2 LINE L2 943 1679 -1635 942 167 19 25 chr1 223493438 223493600 -58700064 - FRAM SINE Alu -23 153 1 208 143 0 0 chr1 223493602 223493637 -58700027 + (T)n Simple_repeat Simple_repeat 1 35 0 525 247 13 26 chr1 223493797 223493951 -58699713 - MLT1D LTR MaLR -10 495 344 5831 166 36 79 chr1 223493952 223495558 -58698106 - L1MA5 LINE L1 -372 5928 4304 1177 43 0 0 chr1 223495558 223495699 -58697965 - AluY SINE Alu -19 292 152 5831 166 36 79 chr1 223495699 223496123 -58697541 - L1MA5 LINE L1 -1996 4304 3863 269 162 0 95 chr1 223497299 223497373 -58696291 - HAL1b LINE L1 -938 410 344 359 338 7 26 chr1 223497875 223498026 -58695638 - MLT1J LTR MaLR -249 262 115 303 247 73 125 chr1 223498947 223499234 -58694430 - MARNA DNA Mariner -9 577 306 23 54 0 0 chr1 223499436 223499473 -58694191 + AT_rich Low_complexity Low_complexity 1 37 0 371 323 43 12 chr1 223499487 223499651 -58694013 + L1M4 LINE L1 4678 4846 -1300 6409 247 94 34 chr1 223500221 223503991 -58689673 - L1ME1 LINE L1 -31 6204 2201 270 0 0 0 chr1 223504475 223504505 -58689159 + (TA)n Simple_repeat Simple_repeat 2 31 0 512 287 42 49 chr1 223504637 223504902 -58688762 - L1ME1 LINE L1 -6088 308 46 516 269 65 35 chr1 223504914 223505282 -58688382 - L1MEc LINE L1 -3957 2439 2061 420 293 20 20 chr1 223505415 223505562 -58688102 + L1M3b LINE L1 1151 1297 -4984 4161 95 14 5 chr1 223505619 223506206 -58687458 - L1PA13 LINE L1 -20 6143 5552 27 0 0 0 chr1 223506618 223506645 -58687019 + AT_rich Low_complexity Low_complexity 1 27 0 215 305 99 46 chr1 223507078 223507229 -58686435 + MIR SINE MIR 78 236 -26 766 329 64 23 chr1 223507238 223507673 -58685991 + L1MA4 LINE L1 1217 1669 -5827 12311 213 37 37 chr1 223508036 223509716 -58683948 + L1MA4 LINE L1 2262 3940 -3779 1804 119 69 108 chr1 223509716 223510095 -58683569 + THE1B LTR MaLR 1 364 0 12311 213 37 37 chr1 223510095 223510857 -58682807 + L1MA4 LINE L1 3940 4700 -3019 1157 239 58 4 chr1 223510857 223511133 -58682531 + AluJo SINE Alu 2 292 -10 12311 213 37 37 chr1 223511133 223511796 -58681868 + L1MA4 LINE L1 4700 5361 -2358 1844 127 11 18 chr1 223511796 223512121 -58681543 - AluSx SINE Alu 0 323 1 12311 213 37 37 chr1 223512121 223514712 -58678952 + L1MA4 LINE L1 5361 7712 -7 211 299 186 10 chr1 223515457 223515554 -58678110 - MIR3 SINE MIR -3 205 92 26 0 0 0 chr1 223515702 223515728 -58677936 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 223516130 223516154 -58677510 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr1 223516667 223516699 -58676965 + (TG)n Simple_repeat Simple_repeat 2 33 0 2249 82 0 0 chr1 223517213 223517518 -58676146 - AluY SINE Alu 0 305 1 2035 119 11 0 chr1 223518008 223518294 -58675370 - AluSg SINE Alu -21 289 1 3635 127 23 29 chr1 223520078 223520183 -58673481 + L1PA16 LINE L1 5397 5501 -665 2428 72 0 0 chr1 223520183 223520489 -58673175 + AluY SINE Alu 1 306 -5 3635 127 23 29 chr1 223520489 223520997 -58672667 + L1PA16 LINE L1 5501 6006 -160 3874 149 92 16 chr1 223520997 223522376 -58671288 + pTR5 LTR ERV1 750 2606 0 801 197 0 0 chr1 223522384 223522536 -58671128 + L1PA16 LINE L1 6013 6164 -2 23 0 0 0 chr1 223524470 223524493 -58669171 + AT_rich Low_complexity Low_complexity 1 23 0 556 281 136 26 chr1 223524900 223525128 -58668536 + MIR SINE MIR 10 262 0 1687 170 43 35 chr1 223527825 223528195 -58665469 + THE1C LTR MaLR 3 375 0 2321 122 11 3 chr1 223528594 223528946 -58664718 + THE1A LTR MaLR 1 355 0 11115 97 17 1 chr1 223528946 223530500 -58663164 + THE1A-int LTR MaLR 1 1579 -1 2386 96 8 38 chr1 223530501 223530788 -58662876 + THE1A LTR MaLR 1 277 -78 1179 167 209 0 chr1 223530788 223531044 -58662620 - AluSx SINE Alu 0 305 1 2386 96 8 38 chr1 223531044 223531121 -58662543 + THE1A LTR MaLR 277 355 0 30 27 0 0 chr1 223531126 223531163 -58662501 + AT_rich Low_complexity Low_complexity 1 37 0 245 334 80 43 chr1 223531749 223532051 -58661613 - L2 LINE L2 -1215 2099 1787 1789 157 0 26 chr1 223532596 223532908 -58660756 + AluSx SINE Alu 1 304 -8 30094 33 2 3 chr1 223534693 223539162 -58654502 - L1PA8 LINE L1 0 6172 1701 252 292 67 17 chr1 223539168 223539288 -58654376 + L2 LINE L2 1829 1954 -1360 1894 171 3 3 chr1 223539854 223540153 -58653511 - AluJb SINE Alu -13 299 1 867 216 77 108 chr1 223540154 223540478 -58653186 + MLT1A2 LTR MaLR 44 357 -17 234 345 0 0 chr1 223540767 223540825 -58652839 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2703 127 33 33 chr1 223540831 223541208 -58652456 + Tigger3(Golem) DNA MER2_type 2530 2909 -119 2117 184 52 2 chr1 223541208 223541610 -58652054 + MSTB LTR MaLR 1 422 -4 2703 127 33 33 chr1 223541610 223541719 -58651945 + Tigger3(Golem) DNA MER2_type 2908 3016 -12 724 291 39 4 chr1 223541858 223542092 -58651572 - MIR SINE MIR 0 262 21 24 0 0 0 chr1 223542240 223542264 -58651400 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 223542324 223542353 -58651311 + AT_rich Low_complexity Low_complexity 1 29 0 470 267 221 29 chr1 223542389 223542623 -58651041 + L2 LINE L2 2948 3256 -57 318 50 0 0 chr1 223542623 223542663 -58651001 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 470 267 221 29 chr1 223542663 223542735 -58650929 + L2 LINE L2 3256 3313 0 643 332 56 61 chr1 223543111 223543665 -58649999 - L2 LINE L2 -720 2594 2044 259 310 0 69 chr1 223545309 223545396 -58648268 + L2 LINE L2 3187 3267 -5 2137 77 0 4 chr1 223545470 223545744 -58647920 - AluY SINE Alu 0 311 39 256 414 82 5 chr1 223545924 223546132 -58647532 + L2 LINE L2 122 345 -2969 1480 347 74 38 chr1 223546407 223546454 -58647210 + L2 LINE L2 1959 2003 -1311 1250 206 64 4 chr1 223546454 223546721 -58646943 - AluJo SINE Alu -29 283 1 1480 347 74 38 chr1 223546721 223547605 -58646059 + L2 LINE L2 2003 2924 -390 196 194 0 32 chr1 223547688 223547750 -58645914 + CT-rich Low_complexity Low_complexity 3 62 0 * 601 160 16 8 chr1 223547747 223547872 -58645792 + C-rich Low_complexity Low_complexity 5 130 0 376 152 0 15 chr1 223547872 223547938 -58645726 + CT-rich Low_complexity Low_complexity 2 66 0 959 87 11 33 chr1 223547938 223548122 -58645542 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1892 152 7 0 chr1 223548125 223548408 -58645256 - AluSq SINE Alu -28 285 1 240 260 96 0 chr1 223548509 223548582 -58645082 + L2 LINE L2 3225 3304 -9 22 80 0 0 chr1 223548784 223548834 -58644830 + AT_rich Low_complexity Low_complexity 1 50 0 1003 270 40 105 chr1 223549703 223550254 -58643410 - MLT1E2 LTR MaLR -4 622 108 2128 184 36 2 chr1 223550254 223550666 -58642998 + MSTB LTR MaLR 1 375 0 291 175 291 19 chr1 223550672 223550775 -58642889 - MLT1E2 LTR MaLR -493 131 1 493 293 18 12 chr1 223551012 223551179 -58642485 + CT-rich Low_complexity Low_complexity 1 168 0 1531 188 15 6 chr1 223551649 223551973 -58641691 + L1M3 LINE L1 5273 5599 -569 1932 181 77 3 chr1 223551973 223552348 -58641316 - MSTA LTR MaLR -24 404 2 8190 199 24 3 chr1 223552349 223553839 -58639825 - MSTA-int LTR MaLR 0 1651 132 325 290 139 89 chr1 223553907 223554390 -58639274 + MLT1J LTR MaLR 1 507 -4 2498 42 3 13 chr1 223555209 223555517 -58638147 - AluY SINE Alu -6 305 1 210 238 0 0 chr1 223555524 223555587 -58638077 + T-rich Low_complexity Low_complexity 1 63 0 12463 29 2 1 chr1 223555588 223557844 -58635820 - L1PA3 LINE L1 -3 6152 3896 184 328 52 60 chr1 223559381 223559515 -58634149 - MIR3 SINE MIR -35 173 41 284 256 66 44 chr1 223559608 223559745 -58633919 - MIR SINE MIR -49 213 74 21 57 0 0 chr1 223559878 223559913 -58633751 + AT_rich Low_complexity Low_complexity 1 35 0 631 296 25 15 chr1 223560278 223560477 -58633187 + MIR SINE MIR 26 226 -36 21 36 0 0 chr1 223560525 223560553 -58633111 + AT_rich Low_complexity Low_complexity 1 28 0 736 289 43 40 chr1 223560660 223560989 -58632675 + L1MC/D LINE L1 5428 5757 -2051 28 61 0 0 chr1 223561009 223561058 -58632606 + AT_rich Low_complexity Low_complexity 1 49 0 690 281 38 58 chr1 223563292 223563691 -58629973 + MER93a LTR ERV1 1 391 -11 745 209 9 111 chr1 223564408 223564633 -58629031 + MLT1B LTR MaLR 187 388 -2 307 218 23 11 chr1 223564717 223564804 -58628860 + LTR33 LTR ERVL 430 517 -4 21 57 0 0 chr1 223565989 223566024 -58627640 + AT_rich Low_complexity Low_complexity 1 35 0 1488 219 48 8 chr1 223566085 223566436 -58627228 - MLT1A1 LTR MaLR 0 365 1 2025 196 19 38 chr1 223566453 223566923 -58626741 - LOR1b LTR ERV1 0 461 1 2282 116 0 0 chr1 223567001 223567304 -58626360 - AluSx SINE Alu -9 303 1 224 333 0 17 chr1 223567437 223567554 -58626110 + GA-rich Low_complexity Low_complexity 3 117 0 323 358 86 0 chr1 223567748 223567910 -58625754 + L1MEc LINE L1 10 185 -6211 289 302 39 29 chr1 223568301 223568506 -58625158 + L1M4 LINE L1 4561 4767 -1379 763 208 6 49 chr1 223568509 223568692 -58624972 + FAM SINE Alu 1 175 0 281 368 103 19 chr1 223569256 223569411 -58624253 + MER91A DNA MER1_type 1 168 -28 459 333 105 24 chr1 223569474 223569856 -58623808 + L1M4 LINE L1 2890 3302 -2844 381 277 144 66 chr1 223569919 223570330 -58623334 - L1MC4 LINE L1 0 8042 7600 262 302 71 8 chr1 223570368 223570494 -58623170 - L1MC4 LINE L1 -458 7584 7451 316 302 41 43 chr1 223571219 223571397 -58622267 + L1M4 LINE L1 4067 4244 -1902 1952 214 17 46 chr1 223571397 223571917 -58621747 + MLT1D LTR MaLR 1 505 0 316 302 41 43 chr1 223571917 223572145 -58621519 + L1M4 LINE L1 4244 4472 -1674 242 386 93 0 chr1 223572727 223572867 -58620797 - MIR SINE MIR -87 175 23 838 150 0 23 chr1 223574266 223574399 -58619265 + FLAM_C SINE Alu 2 131 -2 2737 187 27 7 chr1 223574452 223575050 -58618614 - L1MB7 LINE L1 -15 6169 5560 535 224 17 17 chr1 223575152 223575268 -58618396 + MIR SINE MIR 35 150 -58 1960 184 43 45 chr1 223575701 223576169 -58617495 - MLT1C LTR MaLR 0 467 1 305 257 14 0 chr1 223576517 223576591 -58617073 + MLT1I LTR MaLR 309 383 -26 429 291 115 50 chr1 223577057 223577239 -58616425 + LTR16B LTR ERVL 1 194 -270 661 200 34 0 chr1 223577250 223577425 -58616239 - MER53 DNA DNA 0 189 9 711 241 31 55 chr1 223577444 223577651 -58616013 + LTR16B LTR ERVL 214 424 -40 1601 172 124 60 chr1 223577651 223577874 -58615790 - MSTA LTR MaLR 0 428 221 1698 70 0 48 chr1 223577874 223578104 -58615560 - AluY SINE Alu -13 298 80 1601 172 124 60 chr1 223578104 223578282 -58615382 - MSTA LTR MaLR -207 221 1 9233 141 7 48 chr1 223578285 223579926 -58613738 - MSTA-int LTR MaLR -3 1577 3 1494 168 181 24 chr1 223579928 223580298 -58613366 - MSTA LTR MaLR 0 428 1 711 241 31 55 chr1 223580298 223580340 -58613324 + LTR16B LTR ERVL 427 464 0 256 219 62 0 chr1 223580406 223580470 -58613194 + MIR3 SINE MIR 141 208 0 2177 126 0 3 chr1 223581073 223581382 -58612282 - AluSg SINE Alu -2 308 1 1148 288 38 34 chr1 223581936 223582380 -58611284 + LTR16A1 LTR ERVL 7 452 -5 2291 116 48 20 chr1 223583461 223583815 -58609849 - THE1B LTR MaLR 0 364 1 292 279 176 12 chr1 223583986 223584151 -58609513 + MIR SINE MIR 58 249 -13 23 0 0 0 chr1 223584588 223584611 -58609053 + AT_rich Low_complexity Low_complexity 1 23 0 232 325 0 18 chr1 223584869 223584983 -58608681 + T-rich Low_complexity Low_complexity 5 116 0 268 324 87 51 chr1 223585284 223585596 -58608068 - L1MEc LINE L1 -4640 1670 1348 450 270 100 83 chr1 223585636 223586265 -58607399 - L1MEc LINE L1 -4884 1235 596 444 342 82 18 chr1 223586710 223587040 -58606624 + LTR33 LTR ERVL 165 515 -6 1014 328 25 3 chr1 223587119 223587433 -58606231 + MLT2E LTR ERVL 1 321 -307 425 216 239 12 chr1 223587561 223587728 -58605936 + MLT1F LTR MaLR 338 542 0 242 366 34 6 chr1 223587922 223588097 -58605567 + MLT1-int LTR MaLR 361 540 -831 256 310 170 21 chr1 223590163 223590374 -58603290 - MIR SINE MIR -13 249 10 25 0 0 0 chr1 223590528 223590553 -58603111 + AT_rich Low_complexity Low_complexity 1 25 0 197 62 0 31 chr1 223592017 223592049 -58601615 + (GAAA)n Simple_repeat Simple_repeat 4 34 0 36 53 0 0 chr1 223592513 223592570 -58601094 + AT_rich Low_complexity Low_complexity 1 57 0 318 67 0 0 chr1 223592742 223592787 -58600877 + (TG)n Simple_repeat Simple_repeat 2 46 0 195 69 0 0 chr1 223592866 223592895 -58600769 + (TC)n Simple_repeat Simple_repeat 1 29 0 339 25 0 0 chr1 223594166 223594206 -58599458 + (GA)n Simple_repeat Simple_repeat 1 40 0 297 0 0 0 chr1 223595102 223595135 -58598529 + (T)n Simple_repeat Simple_repeat 1 33 0 447 284 71 82 chr1 223595284 223595436 -58598228 + LTR68 LTR ERV1 1 153 -587 2386 182 20 27 chr1 223595436 223595925 -58597739 + MER66B LTR ERV1 1 486 0 447 284 71 82 chr1 223595925 223596222 -58597442 + LTR68 LTR ERV1 153 445 -295 246 32 0 0 chr1 223596271 223596302 -58597362 + (T)n Simple_repeat Simple_repeat 1 31 0 297 323 205 0 chr1 223596483 223596644 -58597020 + L3 LINE CR1 468 661 -916 199 179 26 0 chr1 223596726 223596765 -58596899 - L3 LINE CR1 -788 789 750 329 325 42 8 chr1 223596901 223597021 -58596643 + L2 LINE L2 3190 3313 0 1194 91 1 2 chr1 223597243 223597418 -58596246 - L1PA7 LINE L1 -507 5647 5498 3785 61 2 4 chr1 223597419 223597913 -58595751 + L1PA7 LINE L1 5647 6139 -15 313 178 0 69 chr1 223598060 223598161 -58595503 - L1MA4A LINE L1 0 6303 6210 182 290 43 0 chr1 223598504 223598573 -58595091 + L2 LINE L2 2667 2738 -576 23 0 0 0 chr1 223598578 223598601 -58595063 + AT_rich Low_complexity Low_complexity 1 23 0 388 272 83 17 chr1 223598745 223598925 -58594739 - L2 LINE L2 -6 3307 3116 211 325 0 52 chr1 223599352 223599429 -58594235 + L2 LINE L2 3200 3272 0 231 36 0 0 chr1 223599897 223599925 -58593739 + (CA)n Simple_repeat Simple_repeat 2 29 0 273 299 129 60 chr1 223600877 223601078 -58592586 - MIR SINE MIR 0 262 48 390 335 117 15 chr1 223601161 223601358 -58592306 - MIR SINE MIR -26 236 20 259 345 111 59 chr1 223601753 223602060 -58591604 - L2 LINE L2 -449 2865 2543 389 290 61 30 chr1 223602067 223602198 -58591466 - L2 LINE L2 -1 3312 3178 * 601 303 197 19 chr1 223602166 223602628 -58591036 - L2 LINE L2 -536 2778 2235 1544 189 70 47 chr1 223602653 223603040 -58590624 + MSTD LTR MaLR 1 396 0 409 215 8 62 chr1 223603172 223603302 -58590362 - L1M4 LINE L1 -849 5297 5175 341 349 53 40 chr1 223604806 223605127 -58588537 + L2 LINE L2 2921 3245 -27 * 422 350 25 6 chr1 223605116 223605279 -58588385 - MIR SINE MIR -34 228 63 207 286 26 26 chr1 223606107 223606184 -58587480 + MIR SINE MIR 156 232 -30 663 329 97 0 chr1 223607190 223607418 -58586246 + MIR SINE MIR 10 259 -3 21 0 0 0 chr1 223607802 223607823 -58585841 + AT_rich Low_complexity Low_complexity 1 21 0 528 116 0 0 chr1 223608257 223608352 -58585312 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 30 27 0 0 chr1 223608465 223608502 -58585162 + AT_rich Low_complexity Low_complexity 1 37 0 697 296 62 45 chr1 223608545 223608808 -58584856 - L1M4 LINE L1 -831 5315 5058 400 95 81 0 chr1 223608808 223608882 -58584782 - MADE1 DNA Mariner 0 80 1 697 296 62 45 chr1 223608882 223609310 -58584354 - L1M4 LINE L1 -1088 5058 4612 231 345 7 20 chr1 223609414 223609562 -58584102 - L1M4 LINE L1 -1784 4362 4217 180 111 0 0 chr1 223609713 223609740 -58583924 + (CATA)n Simple_repeat Simple_repeat 2 28 0 402 248 45 93 chr1 223610100 223610152 -58583512 - L1M4 LINE L1 -2477 3669 3616 2181 128 0 0 chr1 223610152 223610464 -58583200 + AluSx SINE Alu 1 312 0 402 248 45 93 chr1 223610464 223610657 -58583007 - L1M4 LINE L1 -2530 3616 3436 257 68 23 0 chr1 223610917 223610961 -58582703 + (TTG)n Simple_repeat Simple_repeat 3 47 0 303 280 52 47 chr1 223611278 223611471 -58582193 - L1MEd LINE L1 -5168 951 758 1287 283 137 13 chr1 223611487 223612099 -58581565 - L1ME3A LINE L1 -14 6156 5469 688 296 155 17 chr1 223612339 223612745 -58580919 + L2 LINE L2 1910 2371 -943 285 373 8 51 chr1 223612972 223613090 -58580574 + L2 LINE L2 3157 3269 -3 37 23 0 0 chr1 223614618 223614662 -58579002 + AT_rich Low_complexity Low_complexity 1 44 0 330 342 9 0 chr1 223615378 223615492 -58578172 - MIR3 SINE MIR -15 193 79 1240 186 75 53 chr1 223615572 223615657 -58578007 + MLT2B2 LTR ERVL 1 83 -437 1743 120 71 0 chr1 223615657 223615949 -58577715 + AluSq SINE Alu 1 311 0 1240 186 75 53 chr1 223615949 223616239 -58577425 + MLT2B2 LTR ERVL 83 485 -35 405 0 0 0 chr1 223616239 223616284 -58577380 + (CA)n Simple_repeat Simple_repeat 2 46 0 1240 186 75 53 chr1 223616284 223616320 -58577344 + MLT2B2 LTR ERVL 485 519 -1 370 293 93 53 chr1 223616359 223616509 -58577155 + L2 LINE L2 3158 3313 0 1114 284 96 19 chr1 223616677 223617199 -58576465 - L1ME2 LINE L1 -10 6154 5593 1929 162 14 17 chr1 223617917 223618269 -58575395 - L1PB4 LINE L1 -13 6143 5793 216 122 0 0 chr1 223618276 223618317 -58575347 + (TA)n Simple_repeat Simple_repeat 2 42 0 318 250 21 10 chr1 223618317 223618413 -58575251 + L1MC4 LINE L1 6613 6709 -1333 211 139 70 35 chr1 223618419 223618591 -58575073 + (TA)n Simple_repeat Simple_repeat 2 179 0 229 85 85 0 chr1 223618610 223618657 -58575007 + (CTATA)n Simple_repeat Simple_repeat 3 53 0 2845 161 14 2 chr1 223618730 223619234 -58574430 - L1PB4 LINE L1 -369 5787 5278 * 6215 268 40 22 chr1 223619215 223619356 -58574308 - L1PBb LINE L1 -2920 3928 3791 2468 52 0 7 chr1 223619356 223619662 -58574002 - AluY SINE Alu -7 304 1 6215 268 40 22 chr1 223619662 223622293 -58571371 - L1PBb LINE L1 -3057 3791 1000 572 208 29 142 chr1 223622460 223622734 -58570930 - L1PBb LINE L1 -5784 1065 823 340 348 58 0 chr1 223622847 223623002 -58570662 - L1PBb LINE L1 -6015 834 671 308 299 109 44 chr1 223623160 223623297 -58570367 - L1PBb LINE L1 -6035 814 669 346 315 197 39 chr1 223623373 223623652 -58570012 - L1M2 LINE L1 -5920 929 607 1281 294 55 11 chr1 223623657 223624093 -58569571 - L1M2 LINE L1 -6376 473 19 593 286 48 4 chr1 223624105 223624336 -58569328 - L1ME LINE L1 -551 5613 5373 1861 132 21 3 chr1 223625813 223626102 -58567562 + AluSx SINE Alu 1 294 -18 278 269 297 0 chr1 223626248 223626393 -58567271 + MIR SINE MIR 65 252 -10 239 360 69 52 chr1 223626335 223626568 -58567096 - MIR SINE MIR -14 248 12 * 22 0 0 0 chr1 223626839 223626861 -58566803 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 223627014 223627042 -58566622 + AT_rich Low_complexity Low_complexity 1 28 0 1613 178 27 7 chr1 223628431 223628724 -58564940 - AluJb SINE Alu 0 312 14 202 96 0 96 chr1 223628724 223628733 -58564931 + (TTTTTG)n Simple_repeat Simple_repeat 1 9 -38 2454 74 0 3 chr1 223628733 223629045 -58564619 - AluY SINE Alu 0 311 1 202 96 0 96 chr1 223629045 223629087 -58564577 + (TTTTTG)n Simple_repeat Simple_repeat 9 47 0 216 304 25 13 chr1 223629614 223629693 -58563971 + L2 LINE L2 3230 3309 -4 183 254 0 32 chr1 223629803 223629866 -58563798 + L2 LINE L2 3253 3313 0 21 71 0 0 chr1 223630281 223630323 -58563341 + AT_rich Low_complexity Low_complexity 1 42 0 1931 116 10 10 chr1 223630815 223631107 -58562557 - AluSx SINE Alu -20 292 1 469 274 116 42 chr1 223632219 223632434 -58561230 + MIR SINE MIR 1 231 -31 21 0 0 0 chr1 223632691 223632712 -58560952 + AT_rich Low_complexity Low_complexity 1 21 0 356 313 43 43 chr1 223633092 223633373 -58560291 + L1MCc LINE L1 7 287 -6136 613 201 15 50 chr1 223634257 223634416 -58559248 - MSTC LTR MaLR -242 186 27 28 48 0 0 chr1 223634502 223634544 -58559120 + AT_rich Low_complexity Low_complexity 1 42 0 336 48 0 0 chr1 223634751 223634793 -58558871 + (CA)n Simple_repeat Simple_repeat 1 42 0 24 53 0 0 chr1 223635262 223635300 -58558364 + AT_rich Low_complexity Low_complexity 1 38 0 6616 28 3 0 chr1 223635660 223636441 -58557223 - L1PA4 LINE L1 -4 6151 5369 1979 32 0 0 chr1 223636442 223636690 -58556974 + L1PA4 LINE L1 5104 5351 -795 3588 137 19 91 chr1 223636782 223637617 -58556047 - LTR1 LTR ERV1 0 785 11 26 50 0 0 chr1 223638892 223638932 -58554732 + AT_rich Low_complexity Low_complexity 1 40 0 5102 231 55 35 chr1 223639075 223640294 -58553370 + MLT1A1-int LTR MaLR 479 1722 -13 846 208 51 127 chr1 223640299 223640694 -58552970 + MLT1A1 LTR MaLR 1 365 0 4857 217 41 40 chr1 223640696 223640758 -58552906 - L1 LINE L1 -813 6752 6692 1477 232 30 28 chr1 223640758 223641151 -58552513 - MSTD LTR MaLR -2 394 1 4857 217 41 40 chr1 223641151 223642517 -58551147 - L1 LINE L1 -873 6692 5322 1304 281 80 25 chr1 223642521 223643159 -58550505 - L1 LINE L1 -3971 3594 2922 1153 286 53 12 chr1 223643167 223643754 -58549910 + L1M4 LINE L1 2707 3317 -2829 198 284 81 40 chr1 223644115 223644189 -58549475 + L2 LINE L2 2113 2189 -1125 2204 119 3 0 chr1 223644889 223645191 -58548473 + AluSg SINE Alu 1 303 -7 253 264 47 47 chr1 223645688 223645794 -58547870 - MIR SINE MIR -10 252 147 237 263 25 38 chr1 223645927 223646007 -58547657 + MER5B DNA MER1_type 25 103 -75 366 285 124 22 chr1 223646194 223646331 -58547333 + MER5B DNA MER1_type 17 167 -11 2188 243 67 37 chr1 223648264 223649320 -58544344 + L1M2 LINE L1 4457 5546 -745 22 0 0 0 chr1 223649851 223649873 -58543791 + AT_rich Low_complexity Low_complexity 1 22 0 288 306 70 27 chr1 223649965 223650223 -58543441 - L1MC/D LINE L1 -2443 5552 5284 1134 267 65 38 chr1 223650583 223651032 -58542632 + MLT1E3 LTR MaLR 155 615 -9 432 205 43 43 chr1 223651038 223651155 -58542509 + MIR SINE MIR 107 223 -39 24 0 0 0 chr1 223651187 223651211 -58542453 + AT_rich Low_complexity Low_complexity 1 24 0 522 70 0 0 chr1 223651315 223651386 -58542278 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 1710 273 47 34 chr1 223651713 223652531 -58541133 - L1ME3 LINE L1 -67 6095 5266 40 83 0 0 chr1 223652531 223652627 -58541037 + AT_rich Low_complexity Low_complexity 1 96 0 432 291 89 57 chr1 223652733 223653015 -58540649 - L2 LINE L2 -15 3298 3008 22 56 0 0 chr1 223654214 223654250 -58539414 + AT_rich Low_complexity Low_complexity 1 36 0 221 219 0 0 chr1 223655327 223655368 -58538296 + L2 LINE L2 3268 3308 -5 362 330 76 16 chr1 223655858 223656043 -58537621 + L2 LINE L2 3115 3310 -3 2370 103 0 0 chr1 223656706 223657018 -58536646 + AluSx SINE Alu 1 312 0 22 35 0 0 chr1 223657652 223657681 -58535983 + AT_rich Low_complexity Low_complexity 1 29 0 1050 143 0 0 chr1 223658130 223658291 -58535373 - AluSg/x SINE Alu -25 285 125 2361 85 0 0 chr1 223658292 223658587 -58535077 - AluSp SINE Alu -13 300 6 633 286 115 54 chr1 223658663 223659124 -58534540 - MLT1H LTR MaLR -59 490 2 1061 156 5 16 chr1 223659221 223659413 -58534251 - Tigger7 DNA MER2_type 0 2487 2298 * 1640 188 36 7 chr1 223659409 223659717 -58533947 - Tigger7 DNA MER2_type -415 318 2 290 287 8 16 chr1 223660140 223660262 -58533402 - HAL1b LINE L1 -517 831 711 901 184 12 0 chr1 223660264 223660427 -58533237 - Tigger1 DNA MER2_type -1 2417 2253 444 73 15 0 chr1 223660429 223660497 -58533167 + Alu SINE Alu 1 69 -249 5421 174 19 10 chr1 223660597 223661599 -58532065 - Tigger1 DNA MER2_type -1402 1016 6 307 365 126 5 chr1 223661729 223661943 -58531721 - HAL1b LINE L1 -796 552 313 256 326 0 20 chr1 223662085 223662232 -58531432 + T-rich Low_complexity Low_complexity 3 146 0 1052 116 0 0 chr1 223662472 223662618 -58531046 - AluSp/q SINE Alu -14 299 154 21 57 0 0 chr1 223662767 223662802 -58530862 + AT_rich Low_complexity Low_complexity 1 35 0 2102 117 13 0 chr1 223662855 223663162 -58530502 + AluSx SINE Alu 1 311 -1 4751 170 35 39 chr1 223664590 223665615 -58528049 - L1MA10 LINE L1 -2 6332 5312 180 0 0 0 chr1 223665617 223665637 -58528027 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1327 132 0 0 chr1 223665641 223665830 -58527834 - AluSg/x SINE Alu -37 273 85 385 189 14 0 chr1 223665830 223665904 -58527760 - L1MA10 LINE L1 -1143 5003 4929 6398 73 22 10 chr1 223665907 223667052 -58526612 - L1PA7 LINE L1 -6 6148 4998 902 119 0 0 chr1 223667053 223667204 -58526460 + L1P3 LINE L1 1231 1381 -5080 2736 228 25 7 chr1 223667205 223667890 -58525774 - L1MA10 LINE L1 -1212 4934 4238 1917 214 2 12 chr1 223667885 223668306 -58525358 + L1MA10 LINE L1 3822 4238 -1908 * 2091 79 0 35 chr1 223668317 223668630 -58525034 + AluY SINE Alu 1 303 0 223 364 41 16 chr1 223669286 223669407 -58524257 - L2 LINE L2 -559 2755 2632 229 266 83 9 chr1 223669485 223669594 -58524070 - MIR SINE MIR -2 260 144 713 330 44 35 chr1 223669597 223670049 -58523615 - LTR16B LTR ERVL -1 463 8 827 239 11 6 chr1 223670050 223670226 -58523438 - MER45A DNA AcHobo -1 177 1 395 324 32 11 chr1 223670514 223670699 -58522965 - L2 LINE L2 -907 2407 2219 1382 193 26 20 chr1 223670775 223671080 -58522584 + MER90 LTR ERV1 1 307 -268 690 170 52 59 chr1 223671085 223671238 -58522426 - FRAM SINE Alu -3 173 22 333 263 78 35 chr1 223671239 223671470 -58522194 - MLT1E2 LTR MaLR -375 251 27 22 80 0 0 chr1 223674538 223674588 -58519076 + AT_rich Low_complexity Low_complexity 1 50 0 229 416 8 0 chr1 223675012 223675137 -58518527 - MIR SINE MIR -122 140 15 27 73 0 0 chr1 223675910 223675965 -58517699 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr1 223676002 223676026 -58517638 + AT_rich Low_complexity Low_complexity 1 24 0 278 366 20 0 chr1 223676048 223676149 -58517515 - MIR SINE MIR -148 114 12 2403 94 14 0 chr1 223676228 223676578 -58517086 + THE1A LTR MaLR 1 355 0 1627 179 54 43 chr1 223677532 223677883 -58515781 + MLT1A1 LTR MaLR 4 358 -7 628 266 59 6 chr1 223678627 223678796 -58514868 - MER5A DNA MER1_type 0 189 12 4441 197 39 32 chr1 223678817 223680444 -58513220 - L1PB4 LINE L1 -1 6155 4586 1420 214 9 47 chr1 223680444 223680766 -58512898 - AluJb SINE Alu -1 311 2 4441 197 39 32 chr1 223680766 223681225 -58512439 - L1PB4 LINE L1 -1570 4586 4132 24 0 0 0 chr1 223682285 223682309 -58511355 + AT_rich Low_complexity Low_complexity 1 24 0 253 337 96 11 chr1 223683212 223683399 -58510265 + L1MEc LINE L1 100 302 -6094 355 390 29 36 chr1 223685363 223685640 -58508024 - L1MDa LINE L1 -6209 331 57 407 308 70 34 chr1 223685768 223686296 -58507368 + L1ME1 LINE L1 4934 5480 -748 28 0 0 0 chr1 223686663 223686691 -58506973 + AT_rich Low_complexity Low_complexity 1 28 0 728 254 11 0 chr1 223687182 223687359 -58506305 + ERVL LTR ERVL 2778 2956 -2808 808 287 138 4 chr1 223687363 223687840 -58505824 - L1MDb LINE L1 -4068 2338 1798 1796 191 58 9 chr1 223687844 223688274 -58505390 + L1 LINE L1 4003 4453 -1693 * 2148 241 20 8 chr1 223688270 223688869 -58504795 - L1MDb LINE L1 -5229 1180 507 445 333 20 10 chr1 223688925 223689101 -58504563 - L1MDb LINE L1 -5753 656 414 1864 204 24 3 chr1 223689238 223689615 -58504049 - MLT1B LTR MaLR -2 388 4 343 283 62 79 chr1 223689766 223690134 -58503530 + L1MEc LINE L1 1577 1938 -4458 807 235 137 107 chr1 223690134 223690916 -58502748 + LTR28 LTR ERV1 3 1470 -285 253 242 364 0 chr1 223690939 223691038 -58502626 + MER52A LTR ERV1 1621 1755 0 1103 248 60 61 chr1 223691066 223691585 -58502079 + L1ME1 LINE L1 5569 6096 -66 27 0 0 0 chr1 223691695 223691722 -58501942 + AT_rich Low_complexity Low_complexity 1 27 0 290 179 12 60 chr1 223692536 223692620 -58501044 + HERVL40 LTR ERVL 2629 2708 -329 350 333 6 13 chr1 223692759 223692918 -58500746 + MER89-int LTR ERV1 6328 6485 -316 * 430 214 34 17 chr1 223692807 223692924 -58500740 + HERVL40 LTR ERVL 2784 2902 -135 * 718 261 60 28 chr1 223692920 223693138 -58500526 + HERVL40 LTR ERVL 5306 5530 0 652 242 76 32 chr1 223693141 223693513 -58500151 + LTR40b LTR ERVL 4 462 0 507 349 100 14 chr1 223693691 223694241 -58499423 - HERV16 LTR ERVL -3056 1940 1277 246 238 0 50 chr1 223695425 223695505 -58498159 + CT-rich Low_complexity Low_complexity 4 79 0 1184 302 119 52 chr1 223696724 223697512 -58496152 - L2 LINE L2 -414 2900 2060 229 336 26 35 chr1 223697664 223697777 -58495887 + L2 LINE L2 3189 3300 -13 462 64 0 39 chr1 223699444 223699522 -58494142 - L1PA7 LINE L1 0 6154 6080 225 0 0 0 chr1 223699523 223699548 -58494116 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2011 92 0 3 chr1 223699548 223699831 -58493833 - AluY SINE Alu -29 282 1 23 86 0 0 chr1 223700087 223700145 -58493519 + AT_rich Low_complexity Low_complexity 1 58 0 23 33 0 0 chr1 223700229 223700259 -58493405 + AT_rich Low_complexity Low_complexity 1 30 0 405 0 0 0 chr1 223700566 223700611 -58493053 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr1 223700615 223700644 -58493020 + AT_rich Low_complexity Low_complexity 1 29 0 476 323 82 5 chr1 223701264 223701459 -58492205 + MIR SINE MIR 6 215 -47 22 35 0 0 chr1 223701701 223701730 -58491934 + AT_rich Low_complexity Low_complexity 1 29 0 1311 170 7 42 chr1 223701818 223702106 -58491558 - L1MA3 LINE L1 0 6305 6028 1240 280 49 35 chr1 223702110 223702375 -58491289 - L1MC4a LINE L1 -935 6873 6613 2457 136 9 12 chr1 223702375 223702803 -58490861 - L1MA4A LINE L1 -7 6296 5870 1240 280 49 35 chr1 223702803 223703072 -58490592 - L1MC4a LINE L1 -1195 6613 6332 228 311 78 0 chr1 223703099 223703189 -58490475 - MLT1E LTR MaLR -459 134 38 1581 163 67 28 chr1 223703395 223703756 -58489908 + THE1C LTR MaLR 1 375 0 1180 236 31 9 chr1 223703830 223704369 -58489295 + MLT1E1 LTR MaLR 1 626 -28 1186 143 54 46 chr1 223704824 223705104 -58488560 + L1MA10 LINE L1 6052 6333 -1 455 293 50 37 chr1 223705574 223705837 -58487827 - MLT1H LTR MaLR -21 528 245 236 233 0 17 chr1 223705922 223705982 -58487682 - MLT1H LTR MaLR -390 159 101 21 0 0 0 chr1 223707081 223707102 -58486562 + AT_rich Low_complexity Low_complexity 1 21 0 423 248 101 0 chr1 223707419 223707548 -58486116 + L1ME1 LINE L1 6021 6162 -4 21 0 0 0 chr1 223708437 223708458 -58485206 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr1 223708873 223708925 -58484739 + AT_rich Low_complexity Low_complexity 1 52 0 10603 39 0 1 chr1 223709193 223711249 -58482415 - L1PA4 LINE L1 -1 6154 4106 553 255 85 19 chr1 223711663 223711913 -58481751 - MLT1G3 LTR MaLR 0 530 325 380 248 178 0 chr1 223711983 223712112 -58481552 + MLT1H1 LTR MaLR 170 321 -234 7086 101 11 22 chr1 223712379 223713462 -58480202 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr1 223713470 223713493 -58480171 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr1 223714240 223714263 -58479401 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2036 104 40 0 chr1 223714786 223715085 -58478579 + AluY SINE Alu 1 311 0 249 323 16 8 chr1 223715478 223715602 -58478062 + L1MEc LINE L1 1229 1353 -5043 216 90 39 39 chr1 223715668 223715746 -58477918 + (TA)n Simple_repeat Simple_repeat 1 78 0 306 185 19 0 chr1 223715817 223715871 -58477793 + L1PB2 LINE L1 4580 4634 -1512 407 357 0 0 chr1 223716055 223716181 -58477483 + LTR16A LTR ERVL 119 244 -206 1577 242 163 54 chr1 223716356 223717220 -58476444 + Charlie1 DNA MER1_type 3 960 -1801 3458 179 7 19 chr1 223717220 223717918 -58475746 - L1PB2 LINE L1 -1545 4601 3912 3129 194 10 30 chr1 223717918 223718686 -58474978 + L1PB2 LINE L1 4592 5353 -798 2026 114 4 7 chr1 223718686 223719000 -58474664 + AluSc SINE Alu 1 313 0 3129 194 10 30 chr1 223719000 223719111 -58474553 + L1PB2 LINE L1 5353 5465 -686 64 0 0 0 chr1 223719111 223719175 -58474489 + AT_rich Low_complexity Low_complexity 1 64 0 3497 124 15 106 chr1 223719178 223719566 -58474098 + L1PB2 LINE L1 5472 5761 -390 264 30 0 0 chr1 223719566 223719599 -58474065 + (CA)n Simple_repeat Simple_repeat 2 34 0 3497 124 15 106 chr1 223719599 223719957 -58473707 + L1PB2 LINE L1 5761 6150 -1 2166 225 66 64 chr1 223719967 223720675 -58472989 + Charlie1 DNA MER1_type 944 1653 -1108 2631 253 40 21 chr1 223720678 223721695 -58471969 - L1ME1 LINE L1 -7 6159 5127 3756 141 2 8 chr1 223721714 223722304 -58471360 + L1PA15 LINE L1 5325 5910 -255 1823 146 0 29 chr1 223722311 223722626 -58471038 + L1PA15 LINE L1 5859 6164 -1 1020 221 186 24 chr1 223722630 223722969 -58470695 + Charlie1 DNA MER1_type 2273 2694 -67 468 0 0 0 chr1 223722969 223723021 -58470643 + (TA)n Simple_repeat Simple_repeat 2 53 0 1020 221 186 24 chr1 223723021 223723101 -58470563 + Charlie1 DNA MER1_type 2694 2760 -1 307 352 39 0 chr1 223723109 223723237 -58470427 - MIR SINE MIR -84 178 46 22 0 0 0 chr1 223724035 223724057 -58469607 + AT_rich Low_complexity Low_complexity 1 22 0 787 327 136 30 chr1 223724057 223724699 -58468965 - L2 LINE L2 0 3313 2561 3628 106 65 24 chr1 223724699 223725285 -58468379 - MER4B LTR ERV1 0 610 1 787 327 136 30 chr1 223725285 223725499 -58468165 - L2 LINE L2 -752 2561 2371 271 156 0 0 chr1 223726998 223727043 -58466621 + MADE1 DNA Mariner 1 45 -35 375 355 60 6 chr1 223727195 223727361 -58466303 - MIR SINE MIR -71 191 17 788 247 148 25 chr1 223727380 223727733 -58465931 + MSTC LTR MaLR 1 426 -2 240 398 48 0 chr1 223728293 223728396 -58465268 + L2 LINE L2 3184 3291 -22 2444 67 0 13 chr1 223728480 223728794 -58464870 - AluY SINE Alu -1 310 1 252 0 0 0 chr1 223729037 223729065 -58464599 + (CA)n Simple_repeat Simple_repeat 1 28 0 3170 239 17 21 chr1 223729186 223730119 -58463545 + L1MA4 LINE L1 2300 3228 -4337 392 144 9 27 chr1 223730150 223730261 -58463403 + (TA)n Simple_repeat Simple_repeat 1 109 0 11912 201 70 20 chr1 223730333 223730461 -58463203 + L1MA4 LINE L1 3344 3464 -4255 2449 61 3 0 chr1 223730461 223730771 -58462893 + AluY SINE Alu 1 311 0 11912 201 70 20 chr1 223730771 223734533 -58459131 + L1MA4 LINE L1 3464 7441 -278 338 305 110 0 chr1 223735155 223735273 -58458391 + MIR SINE MIR 1 131 -131 28 29 0 0 chr1 223735274 223735309 -58458355 + AT_rich Low_complexity Low_complexity 1 35 0 26 74 0 0 chr1 223735364 223735418 -58458246 + AT_rich Low_complexity Low_complexity 1 54 0 23 54 0 0 chr1 223736090 223736127 -58457537 + AT_rich Low_complexity Low_complexity 1 37 0 1683 133 53 7 chr1 223738012 223738313 -58455351 + L1PA13 LINE L1 5848 6162 -1 1209 138 10 0 chr1 223739003 223739206 -58454458 - L1MA5A LINE L1 0 6297 6093 181 218 113 99 chr1 223740208 223740238 -58453426 - MER5C DNA MER1_type -1 323 295 4801 145 170 29 chr1 223740238 223741358 -58452306 - MER52C LTR ERV1 0 1278 1 181 218 113 99 chr1 223741358 223741469 -58452195 - MER5C DNA MER1_type -29 295 180 377 158 0 49 chr1 223741593 223741675 -58451989 - L1ME LINE L1 -662 5500 5423 22 80 0 0 chr1 223741736 223741786 -58451878 + AT_rich Low_complexity Low_complexity 1 50 0 476 216 0 54 chr1 223742073 223742184 -58451480 - Tigger2a DNA MER2_type 0 434 330 1878 145 19 3 chr1 223742283 223742594 -58451070 - Tigger2a DNA MER2_type -118 316 1 183 129 0 0 chr1 223742995 223743026 -58450638 + (TG)n Simple_repeat Simple_repeat 2 32 0 338 102 34 0 chr1 223743026 223743085 -58450579 + (CATA)n Simple_repeat Simple_repeat 2 62 0 249 151 0 0 chr1 223743086 223743139 -58450525 + GA-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 223743199 223743221 -58450443 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 223743235 223743256 -58450408 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 223743635 223743664 -58450000 + AT_rich Low_complexity Low_complexity 1 29 0 272 267 128 0 chr1 223743701 223743787 -58449877 - MIR SINE MIR -109 153 57 395 271 93 103 chr1 223743857 223744148 -58449516 - MLT1I LTR MaLR -2 407 120 25 31 0 0 chr1 223744863 223744895 -58448769 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 223745440 223745462 -58448202 + AT_rich Low_complexity Low_complexity 1 22 0 207 305 76 68 chr1 223745722 223745840 -58447824 + L2 LINE L2 3191 3309 -4 29 60 0 0 chr1 223745978 223746028 -58447636 + AT_rich Low_complexity Low_complexity 1 50 0 311 238 111 81 chr1 223747062 223747234 -58446430 + MLT1C LTR MaLR 6 182 -285 4825 169 62 11 chr1 223747238 223748706 -58444958 + L1MA8 LINE L1 4716 6264 -27 189 0 0 0 chr1 223748709 223748730 -58444934 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 64 0 0 chr1 223748732 223748779 -58444885 + AT_rich Low_complexity Low_complexity 1 47 0 440 276 80 9 chr1 223748864 223749056 -58444608 + MLT1C LTR MaLR 278 467 0 1002 186 60 15 chr1 223749075 223749274 -58444390 + MER2 DNA MER2_type 3 210 -135 22 56 0 0 chr1 223749368 223749404 -58444260 + AT_rich Low_complexity Low_complexity 1 36 0 302 218 80 85 chr1 223749507 223749695 -58443969 - MER106A DNA MER1_type -1 235 49 257 390 49 0 chr1 223749715 223749838 -58443826 - MIR SINE MIR -130 132 4 215 178 22 0 chr1 223749920 223749965 -58443699 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 461 149 40 7 chr1 223750402 223750550 -58443114 + (TA)n Simple_repeat Simple_repeat 2 154 0 22 35 0 0 chr1 223750566 223750595 -58443069 + AT_rich Low_complexity Low_complexity 1 29 0 269 155 17 0 chr1 223750595 223750653 -58443011 + (TA)n Simple_repeat Simple_repeat 2 60 0 23 33 0 0 chr1 223751513 223751543 -58442121 + AT_rich Low_complexity Low_complexity 1 30 0 283 304 21 36 chr1 223751594 223751795 -58441869 - L1MDa LINE L1 -854 2047 1750 502 316 92 54 chr1 223751801 223752444 -58441220 - L1MC5 LINE L1 -36 7925 7259 495 288 136 54 chr1 223752656 223753083 -58440581 - L1MC5 LINE L1 -889 7072 6611 2339 58 20 0 chr1 223753146 223753440 -58440224 - AluY SINE Alu -11 300 1 307 317 165 16 chr1 223753675 223753924 -58439740 - L1MC4a LINE L1 -1550 6258 5973 258 214 247 0 chr1 223754501 223754590 -58439074 - MER69 DNA AcHobo -2415 111 1 1374 257 40 34 chr1 223754749 223755247 -58438417 + MLT1D LTR MaLR 5 505 0 693 135 29 0 chr1 223755417 223755521 -58438143 - AluSg/x SINE Alu -137 175 69 1148 175 10 0 chr1 223755522 223755722 -58437942 - AluSx SINE Alu -110 202 1 334 389 32 8 chr1 223756522 223756769 -58436895 + L1M3c LINE L1 5 257 -5884 2028 189 29 68 chr1 223756774 223757229 -58436435 - MER70A LTR ERVL 0 472 36 4021 176 15 0 chr1 223757249 223757918 -58435746 - MER70A-int LTR ERVL -7 5016 4338 467 200 33 11 chr1 223757912 223758002 -58435662 - MER70A-int LTR ERVL -1381 3642 3551 * 9406 216 31 23 chr1 223758014 223758688 -58434976 + L1MA7 LINE L1 2771 3438 -2874 2267 75 0 0 chr1 223758688 223759019 -58434645 + AluY SINE Alu 1 331 0 9406 216 31 23 chr1 223759019 223759153 -58434511 + L1MA7 LINE L1 3438 3569 -2743 2882 115 27 18 chr1 223759153 223759598 -58434066 + MLT2A2 LTR ERVL 1 449 -4 9406 216 31 23 chr1 223759598 223760147 -58433517 + L1MA7 LINE L1 3569 4112 -2200 207 0 0 0 chr1 223760147 223760170 -58433494 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 9406 216 31 23 chr1 223760170 223760592 -58433072 + L1MA7 LINE L1 4112 4529 -1783 2235 171 3 3 chr1 223760592 223760967 -58432697 - THE1C LTR MaLR 0 375 1 9406 216 31 23 chr1 223760967 223762020 -58431644 + L1MA7 LINE L1 4529 5628 -684 462 288 62 72 chr1 223762726 223763148 -58430516 + L1ME3A LINE L1 5565 5946 -224 2162 173 14 40 chr1 223762765 223762958 -58430706 + L1MA7 LINE L1 5615 5812 -479 333 0 0 0 chr1 223762958 223762995 -58430669 + (CA)n Simple_repeat Simple_repeat 2 38 0 2162 173 14 40 chr1 223762995 223763245 -58430419 + L1MA7 LINE L1 5812 6046 -245 2890 209 70 65 chr1 223763259 223764059 -58429605 + MER21B LTR ERV1 12 815 -48 1286 165 23 8 chr1 223764093 223764210 -58429454 + L1MA9 LINE L1 6039 6153 -159 243 88 0 0 chr1 223764210 223764244 -58429420 + (CA)n Simple_repeat Simple_repeat 1 34 0 1286 165 23 8 chr1 223764244 223764392 -58429272 + L1MA9 LINE L1 6153 6308 -4 22 0 0 0 chr1 223765400 223765422 -58428242 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr1 223765688 223765748 -58427916 + AT_rich Low_complexity Low_complexity 1 60 0 2272 178 38 62 chr1 223766700 223767233 -58426431 + MLT2B1 LTR ERVL 1 520 0 2678 22 0 0 chr1 223767258 223767572 -58426092 - L1PA2 LINE L1 0 6155 5842 374 320 53 65 chr1 223767596 223767918 -58425746 + HAL1 LINE L1 1062 1379 -1128 306 315 72 36 chr1 223768417 223768668 -58424996 + L1 LINE L1 4017 4276 -1870 12920 26 0 1 chr1 223768708 223771013 -58422651 + L1PA3 LINE L1 3851 6155 0 534 279 37 21 chr1 223771199 223771389 -58422275 + MER3 DNA MER1_type 11 203 -6 200 100 25 0 chr1 223772693 223772733 -58420931 + (TA)n Simple_repeat Simple_repeat 2 42 0 2872 166 22 25 chr1 223772828 223773298 -58420366 + L1PA15 LINE L1 5611 6081 -84 2281 120 8 14 chr1 223773298 223773655 -58420009 + THE1A LTR MaLR 1 355 0 10990 111 4 1 chr1 223773655 223775227 -58418437 + THE1A-int LTR MaLR 1 1576 -4 2521 104 6 3 chr1 223775231 223775585 -58418079 + THE1A LTR MaLR 1 355 0 2872 166 22 25 chr1 223775585 223775663 -58418001 + L1PA15 LINE L1 6083 6163 -2 23 0 0 0 chr1 223775864 223775887 -58417777 + AT_rich Low_complexity Low_complexity 1 23 0 188 67 33 0 chr1 223776432 223776462 -58417202 + (CTAAT)n Simple_repeat Simple_repeat 2 32 0 192 377 39 0 chr1 223776479 223776556 -58417108 - L2 LINE L2 0 3272 3193 2791 154 28 0 chr1 223777801 223777941 -58415723 + L1PB4 LINE L1 5647 5782 -374 378 0 0 0 chr1 223777941 223777983 -58415681 + (CA)n Simple_repeat Simple_repeat 2 43 0 2791 154 28 0 chr1 223777983 223778336 -58415328 + L1PB4 LINE L1 5782 6154 -2 258 370 12 0 chr1 223779121 223779202 -58414462 + MIR3 SINE MIR 115 196 -12 23 54 0 0 chr1 223779923 223779960 -58413704 + AT_rich Low_complexity Low_complexity 1 37 0 512 289 146 37 chr1 223780114 223780764 -58412900 + HAL1b LINE L1 366 1086 -262 22 56 0 0 chr1 223781076 223781112 -58412552 + AT_rich Low_complexity Low_complexity 1 36 0 276 102 0 0 chr1 223782263 223782312 -58411352 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 7655 16 0 0 chr1 223782312 223783456 -58410208 - L1PA2 LINE L1 -18 6137 4995 595 42 0 0 chr1 223783456 223783528 -58410136 + L1PA2 LINE L1 4913 4984 -1162 200 262 0 0 chr1 223784977 223785019 -58408645 + MIR SINE MIR 65 106 -156 2346 57 40 0 chr1 223786498 223786797 -58406867 + AluY SINE Alu 1 311 0 249 323 16 8 chr1 223787194 223787318 -58406346 + L1MEc LINE L1 1229 1353 -5043 216 90 39 39 chr1 223787384 223787462 -58406202 + (TA)n Simple_repeat Simple_repeat 1 78 0 1625 166 19 13 chr1 223787533 223789009 -58404655 + L1PA15 LINE L1 4580 6163 -2 761 225 41 148 chr1 223789038 223789451 -58404213 - MLT1A2 LTR MaLR -5 369 1 306 277 89 71 chr1 223789534 223789588 -58404076 + L1MEc LINE L1 1520 1572 -4824 2127 120 0 3 chr1 223789588 223789889 -58403775 + AluSg SINE Alu 1 300 -10 306 277 89 71 chr1 223789889 223790469 -58403195 + L1MEc LINE L1 1572 2213 -4183 232 164 0 0 chr1 223790648 223790703 -58402961 - L1MC4 LINE L1 -1339 6703 6649 294 29 0 0 chr1 223790770 223790805 -58402859 + (CA)n Simple_repeat Simple_repeat 1 35 0 211 290 0 32 chr1 223791491 223791584 -58402080 + L2 LINE L2 1883 1972 -1342 185 390 42 42 chr1 223792169 223792287 -58401377 + L2 LINE L2 3139 3256 -16 243 337 65 0 chr1 223793147 223793239 -58400425 + L2 LINE L2 3174 3271 -1 33 25 0 0 chr1 223793266 223793306 -58400358 + AT_rich Low_complexity Low_complexity 1 40 0 2336 82 0 0 chr1 223793728 223794032 -58399632 + AluY SINE Alu 1 304 -7 277 284 173 5 chr1 223794916 223795113 -58398551 + Tigger8 DNA MER2_type 58 287 -379 1154 316 39 30 chr1 223796176 223796641 -58397023 + L2 LINE L2 2429 2897 -417 250 294 26 115 chr1 223796702 223796971 -58396693 + L2 LINE L2 3067 3311 -2 2050 123 0 7 chr1 223797085 223797398 -58396266 - AluSp SINE Alu 0 311 1 1638 181 0 33 chr1 223797474 223797777 -58395887 - AluJo SINE Alu -15 297 5 23 68 0 0 chr1 223798342 223798386 -58395278 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chr1 223799359 223799402 -58394262 + AT_rich Low_complexity Low_complexity 1 43 0 31 44 0 0 chr1 223799463 223799508 -58394156 + AT_rich Low_complexity Low_complexity 1 45 0 649 242 57 44 chr1 223800198 223800493 -58393171 + MER61D LTR ERV1 230 343 0 24 32 0 0 chr1 223800585 223800616 -58393048 + AT_rich Low_complexity Low_complexity 1 31 0 352 322 16 0 chr1 223801318 223801439 -58392225 + GA-rich Low_complexity Low_complexity 2 124 0 355 163 31 0 chr1 223801444 223801542 -58392122 + CT-rich Low_complexity Low_complexity 1 101 0 28 29 0 0 chr1 223802833 223802868 -58390796 + AT_rich Low_complexity Low_complexity 1 35 0 614 209 57 73 chr1 223803288 223803465 -58390199 - MER5A DNA MER1_type 0 189 16 213 308 44 11 chr1 223803732 223803823 -58389841 - MIR SINE MIR -56 206 113 979 309 47 16 chr1 223804794 223805240 -58388424 - LTR16B LTR ERVL 0 464 5 348 297 23 34 chr1 223806739 223806914 -58386750 - HERV16 LTR ERVL -301 4695 4523 517 356 62 35 chr1 223806968 223807451 -58386213 - HERVL LTR ERVL -740 4914 4419 772 284 84 16 chr1 223807695 223808075 -58385589 - HERVL LTR ERVL -1151 3845 3440 234 0 0 0 chr1 223808167 223808193 -58385471 + (T)n Simple_repeat Simple_repeat 1 26 0 618 229 22 73 chr1 223808276 223808455 -58385209 - LTR16B LTR ERVL -132 332 163 475 150 80 9 chr1 223809972 223810085 -58383579 - L1MA7 LINE L1 -12 6279 6159 279 54 0 0 chr1 223810099 223810136 -58383528 + (CA)n Simple_repeat Simple_repeat 2 38 0 1480 103 20 0 chr1 223810136 223810340 -58383324 + AluSg/x SINE Alu 97 304 -6 1023 179 31 0 chr1 223810344 223810539 -58383125 + L1MA7 LINE L1 5824 6024 -267 383 369 44 28 chr1 223812037 223812289 -58381375 + MIR SINE MIR 7 262 0 205 171 0 0 chr1 223814128 223814163 -58379501 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 53 0 0 chr1 223815381 223815419 -58378245 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr1 223815767 223815793 -58377871 + AT_rich Low_complexity Low_complexity 1 26 0 257 133 22 0 chr1 223815968 223816013 -58377651 + MADE1 DNA Mariner 35 80 0 300 221 15 15 chr1 223816863 223816931 -58376733 + AluJ/FLAM SINE Alu 2 69 -233 1275 205 0 8 chr1 223817079 223817337 -58376327 + AluJb SINE Alu 43 298 -14 265 277 181 26 chr1 223817374 223817529 -58376135 - MIR SINE MIR -31 231 53 2541 36 0 0 chr1 223818977 223819284 -58374380 + L1PA5 LINE L1 5848 6154 0 21 0 0 0 chr1 223819308 223819329 -58374335 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 223820491 223820519 -58373145 + AT_rich Low_complexity Low_complexity 1 28 0 347 255 197 43 chr1 223820576 223820750 -58372914 - MIR SINE MIR -3 259 47 2147 65 48 0 chr1 223820750 223821041 -58372623 + AluY SINE Alu 1 305 -6 347 255 197 43 chr1 223821041 223821074 -58372590 - MIR SINE MIR -215 47 20 17169 31 3 0 chr1 223821225 223823312 -58370352 - L1PA3 LINE L1 -1513 4633 2540 7647 28 0 0 chr1 223823312 223824864 -58368800 + L1PA3 LINE L1 4603 6154 -1 22 0 0 0 chr1 223826033 223826055 -58367609 + AT_rich Low_complexity Low_complexity 1 22 0 1765 179 112 17 chr1 223829054 223829452 -58364212 - MSTB1 LTR MaLR 0 432 2 2145 119 0 10 chr1 223829513 223829825 -58363839 + AluSc SINE Alu 1 309 0 28 29 0 0 chr1 223829972 223830007 -58363657 + AT_rich Low_complexity Low_complexity 1 35 0 284 98 0 0 chr1 223830138 223830179 -58363485 - U5 snRNA snRNA -67 49 9 316 348 117 43 chr1 223830804 223831155 -58362509 - L1ME4a LINE L1 -268 5853 5477 1426 243 124 41 chr1 223831817 223832817 -58360847 + L1MEc LINE L1 1399 2372 -3843 995 268 130 6 chr1 223832817 223833164 -58360500 + MLT1B LTR MaLR 1 390 0 493 299 6 6 chr1 223833166 223833340 -58360324 + L1MEc LINE L1 2414 2587 -3628 24 0 0 0 chr1 223833970 223833994 -58359670 + AT_rich Low_complexity Low_complexity 1 24 0 2335 79 0 7 chr1 223834839 223835143 -58358521 - AluY SINE Alu -9 302 1 23 54 0 0 chr1 223835710 223835747 -58357917 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 223837796 223837821 -58355843 + AT_rich Low_complexity Low_complexity 1 25 0 302 255 174 27 chr1 223838590 223838739 -58354925 + HAL1b LINE L1 332 502 -846 2436 68 0 0 chr1 223838906 223839201 -58354463 + AluY SINE Alu 1 295 -16 427 200 9 17 chr1 223839752 223839867 -58353797 + GA-rich Low_complexity Low_complexity 5 118 0 189 0 0 0 chr1 223839895 223839916 -58353748 + (T)n Simple_repeat Simple_repeat 1 21 0 912 36 0 0 chr1 223839957 223840069 -58353595 + (TTATG)n Simple_repeat Simple_repeat 2 113 0 560 81 0 0 chr1 223840069 223840143 -58353521 - AluSg/x SINE Alu -27 285 212 236 245 166 33 chr1 223840960 223841111 -58352553 + L1MC/D LINE L1 5731 5901 -1907 22 0 0 0 chr1 223841513 223841535 -58352129 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 223841730 223841758 -58351906 + AT_rich Low_complexity Low_complexity 1 28 0 299 198 28 45 chr1 223842984 223843161 -58350503 + (TTATA)n Simple_repeat Simple_repeat 3 176 0 196 323 132 36 chr1 223843234 223843401 -58350263 + L3 LINE CR1 1386 1568 -9 367 313 140 33 chr1 223843609 223843823 -58349841 - MIR SINE MIR -14 248 12 28 91 0 0 chr1 223844072 223844149 -58349515 + AT_rich Low_complexity Low_complexity 1 77 0 2173 186 26 9 chr1 223844683 223845102 -58348562 - MSTB LTR MaLR 0 426 1 342 233 29 10 chr1 223845560 223845663 -58348001 + L1ME3A LINE L1 5777 5881 -289 504 171 117 0 chr1 223845794 223845905 -58347759 + Tigger5 DNA MER2_type 2085 2208 -115 * 591 186 9 0 chr1 223845902 223846015 -58347649 - MER67D LTR ERV1 -376 138 25 27 49 0 0 chr1 223846109 223846150 -58347514 + AT_rich Low_complexity Low_complexity 1 41 0 254 275 99 0 chr1 223949735 223949826 -58243838 - MLT1J2 LTR MaLR -292 158 59 185 349 0 30 chr1 223950137 223950203 -58243461 + L2 LINE L2 2485 2548 -766 207 0 0 0 chr1 223950461 223950484 -58243180 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1302 195 0 27 chr1 223950488 223950750 -58242914 - AluJb SINE Alu -37 275 21 1121 43 0 7 chr1 223951370 223951511 -58242153 - L1PA7 LINE L1 0 6154 6015 250 216 0 0 chr1 223951518 223951569 -58242095 - L1MC/D LINE L1 -2059 5749 5699 454 97 21 32 chr1 223951686 223951779 -58241885 - L1MA1 LINE L1 -165 6137 6046 181 372 32 21 chr1 223952370 223952464 -58241200 + L3 LINE CR1 1404 1498 -79 2377 43 0 0 chr1 223952527 223952843 -58240821 + AluY SINE Alu 1 316 0 23 68 0 0 chr1 223952993 223953037 -58240627 + AT_rich Low_complexity Low_complexity 1 44 0 481 228 79 55 chr1 223956064 223956266 -58237398 + Charlie7 DNA MER1_type 35 241 -2371 22 0 0 0 chr1 223956551 223956573 -58237091 + AT_rich Low_complexity Low_complexity 1 22 0 291 276 173 11 chr1 223956632 223956817 -58236847 - MER46C DNA MER2_type -1 337 123 25 0 0 0 chr1 223957065 223957090 -58236574 + AT_rich Low_complexity Low_complexity 1 25 0 2209 108 7 0 chr1 223958555 223958860 -58234804 + AluSx SINE Alu 1 307 -5 330 115 0 0 chr1 223958861 223958922 -58234742 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr1 223959675 223959696 -58233968 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 223959813 223959842 -58233822 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 223961592 223961614 -58232050 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr1 223963722 223963758 -58229906 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr1 223963996 223964022 -58229642 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr1 223964143 223964167 -58229497 + AT_rich Low_complexity Low_complexity 1 24 0 184 333 98 10 chr1 223964513 223964615 -58229049 - MIR SINE MIR -111 151 41 180 0 0 0 chr1 223964636 223964656 -58229008 + (TA)n Simple_repeat Simple_repeat 2 21 0 220 0 27 54 chr1 223965086 223965123 -58228541 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr1 223966855 223966886 -58226778 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr1 223967842 223967876 -58225788 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 322 75 10 chr1 223967876 223968075 -58225589 + LTR43 LTR ERV1 223 434 -168 27 0 0 0 chr1 223968380 223968407 -58225257 + AT_rich Low_complexity Low_complexity 1 27 0 626 218 59 0 chr1 223968435 223968605 -58225059 - L1MA4 LINE L1 -4 6296 6117 231 36 0 0 chr1 223969323 223969351 -58224313 + (A)n Simple_repeat Simple_repeat 1 28 0 2302 206 30 11 chr1 223970329 223970868 -58222796 + L1 LINE L1 3269 3817 -2329 5054 157 33 11 chr1 223971211 223971394 -58222270 - L1PA16 LINE L1 -2 6164 5986 1975 150 3 3 chr1 223971394 223971694 -58221970 - AluSx SINE Alu -12 300 1 5054 157 33 11 chr1 223971694 223972565 -58221099 - L1PA16 LINE L1 -180 5986 5086 989 208 14 5 chr1 223972557 223972773 -58220891 + L1PA16 LINE L1 4862 5079 -1067 * 21 0 0 0 chr1 223972848 223972869 -58220795 + AT_rich Low_complexity Low_complexity 1 21 0 219 250 0 0 chr1 223973049 223973117 -58220547 + (TA)n Simple_repeat Simple_repeat 2 69 0 26 88 0 0 chr1 223973955 223974023 -58219641 + AT_rich Low_complexity Low_complexity 1 68 0 2074 179 16 35 chr1 223975161 223975322 -58218342 - MER70-int LTR ERVL -1887 3136 2974 2367 161 107 0 chr1 223975322 223975788 -58217876 - LTR44 LTR ERV1 -3 516 1 2074 179 16 35 chr1 223975788 223976057 -58217607 - MER70-int LTR ERVL -2049 2974 2714 6330 220 47 23 chr1 223976405 223977952 -58215712 - MER70-int LTR ERVL -2296 2727 1144 791 215 27 11 chr1 223977957 223978143 -58215521 - L1 LINE L1 -2424 3722 3534 1872 250 30 8 chr1 223978160 223978824 -58214840 + L1M4 LINE L1 2593 3271 -2875 287 234 0 0 chr1 223979754 223979818 -58213846 + (CA)n Simple_repeat Simple_repeat 2 65 0 33 43 0 0 chr1 223980876 223980923 -58212741 + AT_rich Low_complexity Low_complexity 1 47 0 1860 189 113 54 chr1 223981421 223981941 -58211723 + MER34B LTR ERV1 12 562 -3 402 311 104 21 chr1 223982009 223982202 -58211462 + MIR SINE MIR 53 261 -1 270 295 29 48 chr1 223982215 223982320 -58211344 + L2 LINE L2 3169 3271 -1 1472 187 34 52 chr1 223982560 223982945 -58210719 - L1MA8 LINE L1 -3 6288 5911 326 259 91 56 chr1 223982981 223983124 -58210540 - MIR SINE MIR -40 222 75 1380 282 136 32 chr1 223984302 223985146 -58208518 + Charlie2a DNA MER1_type 39 970 -1892 1597 265 145 45 chr1 223985188 223985406 -58208258 + Charlie2a DNA MER1_type 1042 1237 -1625 4311 120 24 1 chr1 223985406 223986080 -58207584 - L1PA13 LINE L1 -1 6162 5474 1597 265 145 45 chr1 223986080 223987472 -58206192 + Charlie2a DNA MER1_type 1237 2814 -48 2031 118 3 0 chr1 223987474 223987761 -58205903 - AluSg SINE Alu -8 302 15 614 231 0 0 chr1 223989559 223989680 -58203984 + FLAM_C SINE Alu 1 121 -12 219 36 0 0 chr1 223989698 223989726 -58203938 + (CAA)n Simple_repeat Simple_repeat 2 29 0 206 341 124 18 chr1 223989744 223989970 -58203694 + L2 LINE L2 3045 3294 -19 1895 164 21 26 chr1 223989978 223990355 -58203309 - THE1C LTR MaLR 0 375 1 333 309 88 7 chr1 223990591 223990727 -58202937 - MER20B DNA MER1_type -633 150 4 222 37 0 0 chr1 223991158 223991185 -58202479 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 234 290 28 84 chr1 223992223 223992330 -58201334 - L2 LINE L2 -4 3268 3168 232 346 77 0 chr1 223992582 223992686 -58200978 + MIR SINE MIR 121 232 -30 324 277 7 29 chr1 223993041 223993178 -58200486 + (TA)n Simple_repeat Simple_repeat 2 135 0 41 0 0 0 chr1 223993423 223993464 -58200200 + AT_rich Low_complexity Low_complexity 1 41 0 301 75 0 21 chr1 223993685 223993739 -58199925 - L1PA13 LINE L1 -1 6164 6112 187 164 45 75 chr1 223994538 223994605 -58199059 + L3 LINE CR1 1195 1259 -318 497 275 96 0 chr1 223994921 223995088 -58198576 + LTR67 LTR ERVL 375 557 0 455 273 29 7 chr1 223995747 223995886 -58197778 - MLT1J2 LTR MaLR -305 145 4 21 57 0 0 chr1 223996705 223996740 -58196924 + AT_rich Low_complexity Low_complexity 1 35 0 327 104 0 130 chr1 223997115 223997192 -58196472 - L1PA10 LINE L1 0 6168 6102 2064 128 7 0 chr1 223997269 223997566 -58196098 - AluSg SINE Alu -11 299 1 366 274 34 8 chr1 223997806 223997923 -58195741 + LTR67 LTR ERVL 436 555 -2 327 333 56 24 chr1 223998207 223998459 -58195205 + MERVL LTR ERVL 1868 2127 -3358 6759 62 5 1 chr1 223998830 223999711 -58193953 - L1PA5 LINE L1 0 6154 5271 479 330 69 31 chr1 223999720 224000069 -58193595 + MERVL LTR ERVL 2610 2971 -2793 207 0 0 0 chr1 224000583 224000606 -58193058 + (T)n Simple_repeat Simple_repeat 1 23 0 443 337 31 41 chr1 224000633 224000924 -58192740 + MERVL LTR ERVL 3882 4169 -1595 2080 131 0 3 chr1 224003074 224003380 -58190284 - AluSg SINE Alu -5 305 1 30 27 0 0 chr1 224003484 224003521 -58190143 + AT_rich Low_complexity Low_complexity 1 37 0 24 85 0 0 chr1 224003553 224003612 -58190052 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr1 224003742 224003770 -58189894 + AT_rich Low_complexity Low_complexity 1 28 0 685 269 66 20 chr1 224003927 224004286 -58189378 - L1ME LINE L1 -585 5579 5205 1076 251 14 63 chr1 224004577 224004927 -58188737 - LTR52 LTR ERVL -36 385 53 991 265 60 113 chr1 224004929 224005675 -58187989 + MER21B LTR ERV1 8 714 -149 687 295 67 22 chr1 224005743 224006252 -58187412 - L1ME LINE L1 -1207 4939 4408 265 267 96 20 chr1 224006326 224006472 -58187192 - L1ME LINE L1 -3337 2809 2653 1949 146 18 0 chr1 224006627 224006962 -58186702 + L1MA2 LINE L1 5956 6296 -8 32 0 0 0 chr1 224007035 224007067 -58186597 + AT_rich Low_complexity Low_complexity 1 32 0 38 68 0 0 chr1 224007090 224007163 -58186501 + AT_rich Low_complexity Low_complexity 1 73 0 27 0 0 0 chr1 224009948 224009975 -58183689 + AT_rich Low_complexity Low_complexity 1 27 0 1277 182 123 3 chr1 224010140 224010458 -58183206 + MER46B DNA MER2_type 2 232 -4 1517 201 10 20 chr1 224010548 224010852 -58182812 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr1 224011947 224011976 -58181688 + AT_rich Low_complexity Low_complexity 1 29 0 228 296 25 37 chr1 224012210 224012291 -58181373 + MIR SINE MIR 168 247 -15 366 165 0 0 chr1 224012878 224012957 -58180707 + CT-rich Low_complexity Low_complexity 3 81 0 1844 90 0 114 chr1 224013789 224014123 -58179541 - AluSc SINE Alu -13 296 1 1835 122 3 27 chr1 224014476 224014771 -58178893 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr1 224015070 224015100 -58178564 + AT_rich Low_complexity Low_complexity 1 30 0 254 270 22 11 chr1 224015241 224015330 -58178334 + L1M4 LINE L1 3494 3583 -2563 1180 277 92 8 chr1 224015451 224015938 -58177726 + L1M4 LINE L1 4569 5096 -1050 2271 70 6 19 chr1 224015954 224016269 -58177395 + AluY SINE Alu 1 311 0 1244 128 0 66 chr1 224017339 224017582 -58176082 + AluSg/x SINE Alu 85 311 -1 251 154 0 19 chr1 224018676 224018728 -58174936 + GA-rich Low_complexity Low_complexity 2 52 0 5195 52 6 0 chr1 224019825 224020482 -58173182 - L1P LINE L1 -1176 4970 4310 6176 38 0 4 chr1 224020482 224021236 -58172428 + L1PA4 LINE L1 5399 6152 -3 21 0 0 0 chr1 224021722 224021743 -58171921 + AT_rich Low_complexity Low_complexity 1 21 0 217 196 22 0 chr1 224021765 224021811 -58171853 + (TAA)n Simple_repeat Simple_repeat 1 47 0 262 226 0 0 chr1 224021872 224021925 -58171739 - MIR SINE MIR -121 141 89 5548 111 44 9 chr1 224022305 224023791 -58169873 + L1PA11 LINE L1 4655 6173 -1 5612 106 1 3 chr1 224024709 224025492 -58168172 - HERVL-A2 LTR ERVL -425 5229 4448 * 21696 100 7 2 chr1 224025490 224028476 -58165188 - HERVL-A2 LTR ERVL -2649 3005 3 3021 114 11 13 chr1 224028480 224028934 -58164730 - MLT2A2 LTR ERVL 0 453 1 1929 209 21 39 chr1 224028934 224029451 -58164213 + L1MA6 LINE L1 5787 6294 -6 450 65 0 0 chr1 224029972 224030034 -58163630 + (CA)n Simple_repeat Simple_repeat 1 62 0 198 0 0 0 chr1 224030929 224030951 -58162713 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 417 39 0 0 chr1 224031301 224031352 -58162312 + (CA)n Simple_repeat Simple_repeat 2 52 0 1815 219 71 2 chr1 224031357 224031750 -58161914 - MSTB LTR MaLR -4 422 3 269 109 22 0 chr1 224031774 224031820 -58161844 + GA-rich Low_complexity Low_complexity 2 48 0 2196 102 3 0 chr1 224032291 224032586 -58161078 + AluY SINE Alu 11 306 -5 324 312 53 76 chr1 224032609 224032965 -58160699 + L1ME LINE L1 4975 5322 -824 457 264 37 129 chr1 224033072 224033398 -58160266 + L1ME LINE L1 5476 5771 -399 31 26 0 0 chr1 224034115 224034153 -58159511 + AT_rich Low_complexity Low_complexity 1 38 0 2092 77 11 18 chr1 224034170 224034488 -58159176 - AluY SINE Alu 0 316 1 22 0 0 0 chr1 224034493 224034515 -58159149 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr1 224035312 224035355 -58158309 + AT_rich Low_complexity Low_complexity 1 43 0 252 103 52 0 chr1 224035366 224035424 -58158240 + (TA)n Simple_repeat Simple_repeat 1 61 0 1231 220 42 56 chr1 224035608 224035967 -58157697 + MLT1A1 LTR MaLR 12 365 0 1689 243 70 7 chr1 224036567 224037007 -58156657 - LTR53 LTR ERVL -50 469 2 269 276 26 0 chr1 224037420 224037496 -58156168 + MLT1I LTR MaLR 71 148 -261 2114 90 35 0 chr1 224037914 224038226 -58155438 - L1PA13 LINE L1 0 6163 5841 431 261 92 0 chr1 224038226 224038356 -58155308 - L1MA10 LINE L1 -16 6318 6177 1998 291 39 15 chr1 224038420 224039163 -58154501 - L1MEc LINE L1 -5586 810 50 297 89 0 0 chr1 224039316 224039361 -58154303 + (TG)n Simple_repeat Simple_repeat 1 45 0 1885 209 55 2 chr1 224040458 224040859 -58152805 + MLT2B1 LTR ERVL 1 422 -98 1471 197 97 0 chr1 224040911 224041221 -58152443 + MER2 DNA MER2_type 1 340 -5 290 338 63 29 chr1 224041634 224041841 -58151823 - ERVL LTR ERVL -1096 4668 4455 3004 251 126 45 chr1 224041848 224042248 -58151416 + L1P3 LINE L1 209 575 -5886 387 0 0 0 chr1 224042248 224042291 -58151373 + (ATG)n Simple_repeat Simple_repeat 2 44 0 1775 125 11 7 chr1 224042293 224042573 -58151091 - AluSq SINE Alu -32 281 1 3004 251 126 45 chr1 224042573 224043514 -58150150 + L1P3 LINE L1 575 1662 -4799 8442 153 14 4 chr1 224043524 224044992 -58148672 + L1P3 LINE L1 2832 4313 -2148 1142 121 24 0 chr1 224044993 224045159 -58148505 - THE1C LTR MaLR -200 175 6 254 286 0 22 chr1 224045159 224045250 -58148414 - ERVL LTR ERVL -1487 3998 3910 2052 121 3 0 chr1 224045630 224045928 -58147736 + AluSp SINE Alu 1 299 -14 713 269 106 35 chr1 224046411 224046931 -58146733 + L1MC2 LINE L1 4608 5164 -982 2051 119 3 3 chr1 224046932 224047225 -58146439 + AluSg SINE Alu 1 293 -17 1016 264 57 48 chr1 224047288 224047861 -58145803 + L1MC2 LINE L1 5265 5818 -344 2491 48 0 3 chr1 224047972 224048267 -58145397 - AluY SINE Alu -17 294 1 351 96 0 0 chr1 224049431 224049483 -58144181 + (TA)n Simple_repeat Simple_repeat 2 53 0 333 351 92 29 chr1 224050052 224050368 -58143296 + L1MCc LINE L1 263 598 -5825 440 318 77 50 chr1 224050515 224050855 -58142809 + L1MCc LINE L1 960 1308 -5115 * 465 269 105 75 chr1 224050840 224051145 -58142519 + L1ME LINE L1 5398 5711 -459 268 364 31 0 chr1 224051305 224051434 -58142230 - L2 LINE L2 0 3313 3181 471 279 70 42 chr1 224052199 224052414 -58141250 - L1MCc LINE L1 -6122 301 81 25 51 0 0 chr1 224053856 224053895 -58139769 + AT_rich Low_complexity Low_complexity 1 39 0 2765 10 0 0 chr1 224054391 224054695 -58138969 + AluYb8 SINE Alu 1 304 -14 1475 133 43 143 chr1 224054872 224055286 -58138378 - THE1C LTR MaLR 0 375 3 41 0 0 0 chr1 224055319 224055360 -58138304 + AT_rich Low_complexity Low_complexity 1 41 0 450 90 84 6 chr1 224055366 224055532 -58138132 + (TA)n Simple_repeat Simple_repeat 1 179 0 902 301 47 20 chr1 224055857 224056153 -58137511 - MLT1E LTR MaLR 0 593 290 24 67 0 0 chr1 224056918 224056963 -58136701 + AT_rich Low_complexity Low_complexity 1 45 0 206 345 103 0 chr1 224058048 224058106 -58135558 + MIR SINE MIR 37 100 -162 1834 153 14 0 chr1 224058955 224059279 -58134385 - AluSx SINE Alu 0 328 1 290 138 81 24 chr1 224059294 224059417 -58134247 + (TA)n Simple_repeat Simple_repeat 2 131 0 653 221 85 40 chr1 224059505 224059704 -58133960 + MER3 DNA MER1_type 2 209 0 22 0 0 0 chr1 224059977 224059999 -58133665 + AT_rich Low_complexity Low_complexity 1 22 0 1874 176 15 76 chr1 224060209 224060694 -58132970 + L1MA7 LINE L1 5828 6291 0 779 208 0 22 chr1 224061574 224061757 -58131907 - L1 LINE L1 -796 5350 5172 * 1915 157 11 22 chr1 224061755 224062119 -58131545 + L1MA9 LINE L1 5920 6279 -33 991 208 65 31 chr1 224062147 224062600 -58131064 + MLT1D LTR MaLR 1 505 0 1232 184 9 104 chr1 224063409 224063746 -58129918 - AluJo SINE Alu -7 305 1 279 0 0 0 chr1 224063910 224063941 -58129723 + (GA)n Simple_repeat Simple_repeat 2 32 0 210 118 0 0 chr1 224066402 224066436 -58127228 + (TG)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chr1 224066571 224066610 -58127054 + AT_rich Low_complexity Low_complexity 1 39 0 4785 166 27 2 chr1 224066610 224067542 -58126122 - L1MA4 LINE L1 -2 6298 5344 1529 223 18 26 chr1 224067622 224068007 -58125657 + MLT1B LTR MaLR 1 382 -8 978 267 24 4 chr1 224069090 224069341 -58124323 + MSTB LTR MaLR 171 426 0 3754 204 11 0 chr1 224069341 224070062 -58123602 + MSTA-int LTR MaLR 1 729 -922 2151 193 28 16 chr1 224070058 224070489 -58123175 + MSTA-int LTR MaLR 1216 1651 0 * 1730 198 73 6 chr1 224070489 224070843 -58122821 + MSTA LTR MaLR 1 378 -50 1557 141 147 21 chr1 224073712 224074038 -58119626 - THE1C LTR MaLR 0 375 9 216 196 22 0 chr1 224075781 224075827 -58117837 + L2 LINE L2 3254 3300 -13 239 353 104 12 chr1 224076335 224076508 -58117156 - L2 LINE L2 -249 3023 2835 27 0 0 0 chr1 224076762 224076789 -58116875 + AT_rich Low_complexity Low_complexity 1 27 0 2415 66 0 0 chr1 224076793 224077097 -58116567 - AluY SINE Alu -6 305 2 1673 52 0 22 chr1 224077422 224077652 -58116012 + L1PA4 LINE L1 5931 6155 0 22 70 0 0 chr1 224077742 224077785 -58115879 + AT_rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr1 224078194 224078218 -58115446 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 254 277 50 10 chr1 224078470 224078571 -58115093 - MER63C DNA MER1_type -3 927 823 698 148 0 0 chr1 224078581 224078696 -58114968 - L1P LINE L1 -2376 3770 3656 2395 133 0 18 chr1 224078697 224079097 -58114567 + L1PA13 LINE L1 5769 6161 -2 1210 282 120 2 chr1 224079099 224079614 -58114050 - MER63C DNA MER1_type -102 828 253 635 289 67 39 chr1 224079765 224080332 -58113332 + L1MEc LINE L1 1232 1814 -4582 1376 168 18 7 chr1 224080947 224081227 -58112437 + L1MA4 LINE L1 6017 6299 -1 21 0 0 0 chr1 224082985 224083006 -58110658 + AT_rich Low_complexity Low_complexity 1 21 0 476 184 26 9 chr1 224083091 224083205 -58110459 - L1MB5 LINE L1 -8 6166 6051 25 31 0 0 chr1 224083323 224083355 -58110309 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr1 224083428 224083471 -58110193 + AT_rich Low_complexity Low_complexity 1 43 0 1008 62 28 7 chr1 224085572 224085716 -58107948 - L1MA3 LINE L1 -10 6295 6149 1056 139 10 30 chr1 224085942 224086143 -58107521 + L1MA4A LINE L1 6101 6297 -6 531 269 23 19 chr1 224086360 224086576 -58107088 - L1ME3A LINE L1 -219 5951 5735 689 215 0 54 chr1 224087092 224087241 -58106423 - MLT1A2 LTR MaLR -45 329 189 1958 137 7 0 chr1 224087461 224087746 -58105918 + AluSp SINE Alu 3 289 -24 294 303 50 68 chr1 224088038 224088259 -58105405 - L2 LINE L2 -65 3248 3032 21 36 0 0 chr1 224088407 224088435 -58105229 + AT_rich Low_complexity Low_complexity 1 28 0 2320 73 0 38 chr1 224088810 224089124 -58104540 - AluY SINE Alu -5 306 5 525 96 0 0 chr1 224089054 224089127 -58104537 - Alu SINE Alu -237 74 2 1351 177 48 4 chr1 224089361 224089656 -58104008 + L1PA16 LINE L1 5824 6157 -6 35 41 0 0 chr1 224089831 224089880 -58103784 + AT_rich Low_complexity Low_complexity 1 49 0 1810 181 75 75 chr1 224090088 224090482 -58103182 - MLT2B2 LTR ERVL -63 452 56 2348 61 0 14 chr1 224090482 224090778 -58102886 - AluY SINE Alu -17 294 3 1810 181 75 75 chr1 224090778 224090835 -58102829 - MLT2B2 LTR ERVL -458 57 1 4464 187 58 2 chr1 224090835 224091751 -58101913 + L1MC1 LINE L1 5367 6333 0 6888 185 9 14 chr1 224091844 224093238 -58100426 - L1PA13 LINE L1 -1970 4176 2789 5686 180 13 10 chr1 224093239 224095193 -58098471 + L1PA13 LINE L1 4179 6152 -11 290 274 12 0 chr1 224095468 224095552 -58098112 + (TA)n Simple_repeat Simple_repeat 2 86 0 322 251 0 0 chr1 224095558 224095630 -58098034 + MLT1J LTR MaLR 65 125 -321 1486 73 49 0 chr1 224096666 224096871 -58096793 + L1PA5 LINE L1 5939 6153 -1 28 99 0 0 chr1 224098583 224098674 -58094990 + AT_rich Low_complexity Low_complexity 1 91 0 28 0 0 0 chr1 224098801 224098829 -58094835 + AT_rich Low_complexity Low_complexity 1 28 0 1935 176 31 0 chr1 224099266 224099619 -58094045 + THE1B LTR MaLR 1 364 0 834 250 6 10 chr1 224099924 224100176 -58093488 - L1MB7 LINE L1 -339 5845 5594 2098 149 91 13 chr1 224100597 224100994 -58092670 + MSTA LTR MaLR 1 428 0 305 350 0 44 chr1 224101040 224101177 -58092487 - MIR SINE MIR -131 131 1 1888 216 37 55 chr1 224101221 224101692 -58091972 + MLT1D LTR MaLR 1 464 -41 2347 74 0 13 chr1 224101692 224102004 -58091660 - AluY SINE Alu -3 308 1 1888 216 37 55 chr1 224102004 224102046 -58091618 + MLT1D LTR MaLR 464 505 0 28 0 0 0 chr1 224103653 224103681 -58089983 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr1 224103873 224103894 -58089770 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 543 342 47 17 chr1 224104303 224104601 -58089063 + LTR16A LTR ERVL 36 342 -108 1115 327 20 41 chr1 224104626 224105167 -58088497 + HERV16 LTR ERVL 39 568 -4428 1445 302 53 9 chr1 224105195 224105662 -58088002 + HERV16 LTR ERVL 748 1235 -3761 1032 344 84 16 chr1 224106409 224106503 -58087161 - L2 LINE L2 -423 2891 2805 2031 71 18 4 chr1 224106503 224106784 -58086880 - L1PA7 LINE L1 -2 6152 5868 1032 344 84 16 chr1 224106784 224107334 -58086330 - L2 LINE L2 -509 2805 2203 2391 183 14 22 chr1 224107399 224107603 -58086061 - L1MA4 LINE L1 -7 6293 6089 1774 141 28 0 chr1 224107603 224107886 -58085778 - AluSx SINE Alu -14 298 8 2391 183 14 22 chr1 224107886 224108190 -58085474 - L1MA4 LINE L1 -211 6089 5789 252 85 0 0 chr1 224108206 224108253 -58085411 + LTR66 LTR ERVL 394 440 -170 309 179 18 0 chr1 224108254 224108310 -58085354 - L1MA4 LINE L1 -627 5673 5617 * 4221 186 31 16 chr1 224108307 224109488 -58084176 + L1MA4 LINE L1 4405 5609 -691 608 304 42 14 chr1 224110038 224110255 -58083409 + MIR SINE MIR 40 262 0 294 245 19 38 chr1 224112501 224112607 -58081057 + CT-rich Low_complexity Low_complexity 3 106 0 198 313 229 36 chr1 224113029 224113195 -58080469 + MIR SINE MIR 35 232 -30 2990 147 42 45 chr1 224115569 224116217 -58077447 - L1MA5A LINE L1 -1 6296 5651 543 245 0 36 chr1 224116247 224116386 -58077278 - L1PA16 LINE L1 0 6166 6033 * 765 142 0 16 chr1 224116370 224116497 -58077167 - L1MA5A LINE L1 -647 5650 5526 * 3250 171 15 43 chr1 224116490 224116648 -58077016 + L1M2 LINE L1 4620 4781 -1492 189 0 0 0 chr1 224116648 224116669 -58076995 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3250 171 15 43 chr1 224116669 224117438 -58076226 + L1M2 LINE L1 4781 5530 -743 2179 88 47 0 chr1 224117842 224118139 -58075525 + AluY SINE Alu 1 311 0 1523 176 0 18 chr1 224119331 224119610 -58074054 - AluJb SINE Alu -3 309 36 900 187 0 6 chr1 224120234 224120400 -58073264 - AluSg/x SINE Alu -15 295 131 22 0 0 0 chr1 224120654 224120676 -58072988 + AT_rich Low_complexity Low_complexity 1 22 0 2256 154 200 108 chr1 224121556 224122917 -58070747 + pTR5 LTR ERV1 743 2438 0 1584 143 53 0 chr1 224122920 224123185 -58070479 + AluSx SINE Alu 31 309 -3 32 67 0 0 chr1 224124220 224124280 -58069384 + AT_rich Low_complexity Low_complexity 1 60 0 2573 114 46 2 chr1 224124723 224125154 -58068510 - L1PA13 LINE L1 -2 6161 5712 26 74 0 0 chr1 224125397 224125451 -58068213 + AT_rich Low_complexity Low_complexity 1 54 0 1708 132 0 8 chr1 224125614 224125879 -58067785 + AluSc SINE Alu 45 307 -2 987 223 23 4 chr1 224126876 224127141 -58066523 - L1MA4 LINE L1 -11 6289 6020 252 77 0 0 chr1 224127183 224127222 -58066442 + (TA)n Simple_repeat Simple_repeat 2 40 0 1542 202 3 0 chr1 224127240 224127527 -58066137 - AluJo SINE Alu -24 288 1 295 325 45 65 chr1 224127715 224127915 -58065749 + L3 LINE CR1 888 1083 -494 22 35 0 0 chr1 224128044 224128073 -58065591 + AT_rich Low_complexity Low_complexity 1 29 0 2815 208 66 10 chr1 224128238 224128658 -58065006 - MER67B LTR ERV1 -3 658 192 1724 127 139 56 chr1 224128658 224129053 -58064611 + MSTA LTR MaLR 1 428 0 2815 208 66 10 chr1 224129053 224129242 -58064422 - MER67B LTR ERV1 -469 192 15 1497 236 59 5 chr1 224129747 224130154 -58063510 - L1MA10 LINE L1 -871 5275 4847 * 2151 201 18 48 chr1 224130152 224130710 -58062954 + L1MA10 LINE L1 5266 5806 -362 1564 188 36 19 chr1 224130711 224131073 -58062591 + L1MA10 LINE L1 5964 6331 -3 2271 53 3 7 chr1 224131138 224131455 -58062209 + AluSp SINE Alu 1 316 0 183 204 0 0 chr1 224131542 224131596 -58062068 + (TA)n Simple_repeat Simple_repeat 1 54 0 215 182 23 0 chr1 224131887 224131931 -58061733 + (TA)n Simple_repeat Simple_repeat 2 46 0 2264 95 0 9 chr1 224132019 224132335 -58061329 - AluSq SINE Alu 0 313 1 27 62 0 0 chr1 224132712 224132760 -58060904 + AT_rich Low_complexity Low_complexity 1 48 0 626 308 50 31 chr1 224134665 224134986 -58058678 + ERVL LTR ERVL 4314 4640 -1124 284 328 37 30 chr1 224135289 224135423 -58058241 - L2 LINE L2 -18 3295 3161 * 303 295 128 19 chr1 224135420 224135576 -58058088 - L2 LINE L2 -780 2534 2362 672 104 19 0 chr1 224135894 224136000 -58057664 + AluY SINE Alu 204 311 0 25 31 0 0 chr1 224136389 224136421 -58057243 + AT_rich Low_complexity Low_complexity 1 32 0 2121 111 13 3 chr1 224136510 224136816 -58056848 - AluSx SINE Alu -2 310 2 27 0 0 0 chr1 224137405 224137432 -58056232 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr1 224137685 224137705 -58055959 + (CA)n Simple_repeat Simple_repeat 2 21 0 4271 226 84 39 chr1 224137705 224138655 -58055009 - L1MB7 LINE L1 -40 6144 5238 2134 120 7 3 chr1 224138655 224138964 -58054700 + AluSg SINE Alu 1 310 0 4271 226 84 39 chr1 224138964 224140433 -58053231 - L1MB7 LINE L1 -946 5238 3626 594 148 33 16 chr1 224141836 224141958 -58051706 - MER58 DNA MER1_type -144 197 74 778 227 42 5 chr1 224141985 224142201 -58051463 - L1MA8 LINE L1 -24 6267 6044 390 307 87 39 chr1 224142310 224142549 -58051115 - MIR SINE MIR -5 257 8 734 292 131 26 chr1 224142721 224142774 -58050890 + HAL1 LINE L1 1154 1200 -1307 2524 56 0 0 chr1 224142774 224143078 -58050586 + AluY SINE Alu 1 304 -7 734 292 131 26 chr1 224143078 224143763 -58049901 + HAL1 LINE L1 1200 1970 -537 377 283 56 48 chr1 224143983 224144234 -58049430 + HAL1 LINE L1 2244 2496 -11 23 33 0 0 chr1 224144721 224144751 -58048913 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr1 224144797 224144829 -58048835 + AT_rich Low_complexity Low_complexity 1 32 0 450 278 81 13 chr1 224144956 224145190 -58048474 + L1MC5 LINE L1 7636 7885 -76 2495 266 96 53 chr1 224145726 224145903 -58047761 + L1MB8 LINE L1 675 843 -5539 1760 116 76 4 chr1 224145903 224146179 -58047485 + AluSx SINE Alu 1 296 -16 2495 266 96 53 chr1 224146179 224149003 -58044661 + L1MB8 LINE L1 843 3959 -2423 2158 113 0 31 chr1 224149003 224149323 -58044341 + AluSg SINE Alu 1 310 0 2495 266 96 53 chr1 224149323 224149590 -58044074 + L1MB8 LINE L1 3959 4213 -2169 1857 269 33 52 chr1 224149600 224150580 -58043084 + L1MB8 LINE L1 4467 5427 -955 825 186 25 6 chr1 224150580 224150741 -58042923 + LTR32 LTR ERVL 232 395 -76 402 158 20 82 chr1 224150756 224150902 -58042762 + L1MB8 LINE L1 5426 5562 -820 1065 140 0 6 chr1 224150904 224151075 -58042589 - LOR1b-int LTR ERV1 -2150 5970 5801 * 4919 118 8 19 chr1 224151065 224151870 -58041794 - LOR1b-int LTR ERV1 -2596 5524 4729 1800 218 10 45 chr1 224151881 224152330 -58041334 + MER52A LTR ERV1 264 774 -981 434 188 10 10 chr1 224152330 224152426 -58041238 - LOR1b-int LTR ERV1 -6039 2081 1986 300 114 14 29 chr1 224152427 224152497 -58041167 + (TTC)n Simple_repeat Simple_repeat 2 70 0 9502 124 75 13 chr1 224152513 224154195 -58039469 - LOR1b-int LTR ERV1 -6131 1989 203 1977 169 25 16 chr1 224154205 224154572 -58039092 - LOR1b-int LTR ERV1 -7749 371 2 1836 174 66 50 chr1 224154573 224155011 -58038653 - LOR1b LTR ERV1 0 461 17 1896 269 50 10 chr1 224155060 224155677 -58037987 + L1MB8 LINE L1 5727 6368 -46 214 125 42 0 chr1 224155727 224155775 -58037889 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 35 0 0 chr1 224155787 224155816 -58037848 + AT_rich Low_complexity Low_complexity 1 29 0 309 183 43 86 chr1 224155826 224155919 -58037745 - L1MC4 LINE L1 -1339 6703 6615 419 115 94 52 chr1 224155919 224156015 -58037649 + L1MC/D LINE L1 5508 5607 -726 447 219 93 13 chr1 224156099 224156250 -58037414 + MER20B DNA MER1_type 616 778 -5 2203 170 31 16 chr1 224157032 224157479 -58036185 + L1MC/D LINE L1 5350 5803 -530 23 33 0 0 chr1 224157654 224157684 -58035980 + AT_rich Low_complexity Low_complexity 1 30 0 225 304 0 25 chr1 224158671 224158750 -58034914 + L2 LINE L2 3236 3312 -1 1698 163 129 13 chr1 224159084 224159464 -58034200 - MSTA LTR MaLR -4 424 1 23 33 0 0 chr1 224160411 224160441 -58033223 + AT_rich Low_complexity Low_complexity 1 30 0 1982 74 74 3 chr1 224160691 224160975 -58032689 + AluY SINE Alu 1 304 -7 375 284 39 16 chr1 224161135 224161262 -58032402 - MIR SINE MIR -39 223 94 6107 44 1 1 chr1 224161712 224162465 -58031199 - L1PA4 LINE L1 -1 6154 5402 8697 37 0 5 chr1 224162465 224164296 -58029368 + L1PA5 LINE L1 4310 6141 -13 23 0 0 0 chr1 224165581 224165604 -58028060 + AT_rich Low_complexity Low_complexity 1 23 0 1863 187 56 27 chr1 224165817 224166349 -58027315 + MLT2A2 LTR ERVL 1 554 0 21 0 0 0 chr1 224166612 224166633 -58027031 + AT_rich Low_complexity Low_complexity 1 21 0 5812 101 13 0 chr1 224166923 224168030 -58025634 - L1PA14 LINE L1 -4 6157 5086 639 121 20 0 chr1 224168736 224168835 -58024829 + L1P4 LINE L1 5509 5609 -552 2781 139 7 0 chr1 224168931 224169362 -58024302 - MER57B LTR ERV1 0 434 1 569 296 15 5 chr1 224170063 224170269 -58023395 - MER3 DNA MER1_type -1 208 1 30 27 0 0 chr1 224170547 224170584 -58023080 + AT_rich Low_complexity Low_complexity 1 37 0 208 288 17 0 chr1 224171343 224171402 -58022262 - L2 LINE L2 0 3272 3213 243 0 0 0 chr1 224171460 224171487 -58022177 + (TG)n Simple_repeat Simple_repeat 2 28 0 3244 177 5 2 chr1 224171503 224172092 -58021572 + L1P LINE L1 4540 5130 -1016 185 429 0 9 chr1 224172908 224173020 -58020644 + MIR SINE MIR 44 154 -108 1145 264 50 83 chr1 224173749 224173930 -58019734 - MLT1F1 LTR MaLR -6 561 376 2091 106 13 7 chr1 224173930 224174231 -58019433 - AluSx SINE Alu -9 303 1 1145 264 50 83 chr1 224174231 224174545 -58019119 - MLT1F1 LTR MaLR -191 376 82 253 214 67 11 chr1 224174768 224174857 -58018807 - L1ME1 LINE L1 -1 6177 6080 272 191 35 35 chr1 224174913 224175028 -58018636 + L1M4 LINE L1 3821 3935 -2211 34 65 0 0 chr1 224175041 224175103 -58018561 + AT_rich Low_complexity Low_complexity 1 62 0 49 71 0 0 chr1 224175157 224175255 -58018409 + AT_rich Low_complexity Low_complexity 1 98 0 234 0 0 0 chr1 224175265 224175291 -58018373 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 681 36 0 0 chr1 224175291 224175374 -58018290 - L1PA3 LINE L1 -10 6145 6063 272 200 0 0 chr1 224176374 224176419 -58017245 - Tigger3b DNA MER2_type -1 1230 1186 9122 29 2 0 chr1 224176419 224177502 -58016162 - L1PA2 LINE L1 -1171 4975 3891 7533 23 1 0 chr1 224177502 224178670 -58014994 + L1PA2 LINE L1 4996 6164 0 5569 163 86 2 chr1 224178672 224179241 -58014423 - Tigger3b DNA MER2_type -1832 1196 676 360 0 0 0 chr1 224179241 224179281 -58014383 + (TA)n Simple_repeat Simple_repeat 1 40 0 5569 163 86 2 chr1 224179281 224179813 -58013851 - Tigger3b DNA MER2_type -2352 676 2 24 32 0 0 chr1 224180912 224180943 -58012721 + AT_rich Low_complexity Low_complexity 1 31 0 25 95 0 0 chr1 224181890 224181964 -58011700 + AT_rich Low_complexity Low_complexity 1 74 0 1980 114 11 0 chr1 224182664 224182945 -58010719 - AluSq SINE Alu -29 284 1 370 0 40 0 chr1 224183097 224183147 -58010517 + (TA)n Simple_repeat Simple_repeat 1 52 0 333 62 0 0 chr1 224183147 224183195 -58010469 + (GA)n Simple_repeat Simple_repeat 1 48 0 736 58 48 0 chr1 224183201 224183304 -58010360 - L1PA13 LINE L1 -4 6159 6052 1392 254 153 57 chr1 224184337 224185090 -58008574 + LTR1B LTR ERV1 2 826 0 1157 240 100 57 chr1 224185122 224185664 -58008000 - MLT1E LTR MaLR -8 581 2 23 0 0 0 chr1 224186343 224186366 -58007298 + AT_rich Low_complexity Low_complexity 1 23 0 360 329 88 18 chr1 224186375 224186545 -58007119 - MIR SINE MIR -73 189 8 25 31 0 0 chr1 224186636 224186668 -58006996 + AT_rich Low_complexity Low_complexity 1 32 0 233 232 14 94 chr1 224187571 224187709 -58005955 - L1M4 LINE L1 -1537 4609 4483 2547 220 49 31 chr1 224187809 224188485 -58005179 - MER76 LTR ERV 0 688 1 489 310 114 0 chr1 224188768 224188952 -58004712 + MIR SINE MIR 10 214 -48 284 294 71 0 chr1 224189295 224189380 -58004284 + L2 LINE L2 3149 3239 -33 304 323 64 32 chr1 224189414 224189634 -58004030 - MIR SINE MIR -22 240 14 1175 259 106 35 chr1 224190127 224190532 -58003132 + MLT2B1 LTR ERVL 2 435 -85 41 21 0 0 chr1 224190538 224190586 -58003078 + AT_rich Low_complexity Low_complexity 1 48 0 2438 147 20 31 chr1 224191128 224191577 -58002087 + MLT2A1 LTR ERVL 1 444 0 16694 87 10 3 chr1 224191578 224193794 -57999870 + HERVL-A1 LTR ERVL 2 2233 -3421 * 22372 79 10 8 chr1 224193787 224196325 -57997339 + HERVL-A1 LTR ERVL 2522 5068 -586 2176 92 24 7 chr1 224196325 224196620 -57997044 + AluSx SINE Alu 1 300 -12 22372 79 10 8 chr1 224196620 224197058 -57996606 + HERVL-A1 LTR ERVL 5068 5504 -150 1287 90 28 0 chr1 224197909 224198086 -57995578 + HERVL LTR ERVL 3367 3548 -2106 25 90 0 0 chr1 224198093 224198160 -57995504 + AT_rich Low_complexity Low_complexity 1 67 0 1088 74 7 7 chr1 224198217 224198366 -57995298 + HERVL LTR ERVL 4754 4902 -752 24 53 0 0 chr1 224198380 224198418 -57995246 + AT_rich Low_complexity Low_complexity 1 38 0 38 39 0 0 chr1 224198634 224198686 -57994978 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr1 224200179 224200201 -57993463 + AT_rich Low_complexity Low_complexity 1 22 0 321 340 49 12 chr1 224200646 224200808 -57992856 - MER5A DNA MER1_type -21 168 1 461 304 144 29 chr1 224201516 224202041 -57991623 - MLT1G1 LTR MaLR 0 555 6 196 231 0 39 chr1 224202094 224202146 -57991518 + L2 LINE L2 3193 3242 -71 2170 109 0 0 chr1 224202451 224202745 -57990919 - AluSc SINE Alu -11 298 5 208 261 154 0 chr1 224203060 224203125 -57990539 - L2 LINE L2 -37 3276 3202 622 235 27 0 chr1 224203280 224203467 -57990197 + L1MA8 LINE L1 6100 6291 0 4636 174 44 13 chr1 224203468 224204743 -57988921 + L1PA16 LINE L1 4843 6163 -3 29 70 0 0 chr1 224204743 224204800 -57988864 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr1 224204932 224204956 -57988708 + AT_rich Low_complexity Low_complexity 1 24 0 2060 139 73 14 chr1 224205018 224205362 -57988302 + THE1B LTR MaLR 1 364 0 9870 135 20 3 chr1 224205362 224206914 -57986750 + THE1B-int LTR MaLR 1 1578 -2 1708 166 88 38 chr1 224206920 224207263 -57986401 + THE1B LTR MaLR 5 364 0 24 32 0 0 chr1 224207266 224207297 -57986367 + AT_rich Low_complexity Low_complexity 1 31 0 221 333 37 37 chr1 224207320 224207401 -57986263 - L2 LINE L2 -8 3264 3184 292 333 20 0 chr1 224207554 224207656 -57986008 + MLT1J LTR MaLR 3 106 -405 474 290 65 21 chr1 224207734 224207920 -57985744 + MLT1J LTR MaLR 243 436 -75 310 323 57 25 chr1 224208139 224208297 -57985367 - L2 LINE L2 0 3313 3151 1314 311 71 48 chr1 224208867 224209865 -57983799 + L1MCb LINE L1 64 1084 -4961 640 213 7 0 chr1 224209867 224210003 -57983661 + L1MC3 LINE L1 7263 7399 -386 2397 61 0 0 chr1 224210129 224210440 -57983224 - AluYa5 SINE Alu 0 311 1 2042 240 20 86 chr1 224210597 224211305 -57982359 - MER76 LTR ERV -27 661 1 8508 158 20 9 chr1 224211545 224213023 -57980641 + THE1B-int LTR MaLR 85 1578 -2 1652 172 88 38 chr1 224213029 224213372 -57980292 + THE1B LTR MaLR 5 364 0 24 32 0 0 chr1 224213375 224213406 -57980258 + AT_rich Low_complexity Low_complexity 1 31 0 251 321 36 36 chr1 224213426 224213510 -57980154 - L2 LINE L2 -5 3267 3184 474 290 65 21 chr1 224213844 224214030 -57979634 + MLT1J LTR MaLR 243 436 -75 297 314 57 31 chr1 224214249 224214408 -57979256 - L2 LINE L2 0 3313 3151 190 382 45 0 chr1 224214452 224214541 -57979123 - L2 LINE L2 -255 3058 2966 1296 313 71 47 chr1 224214978 224215975 -57977689 + L1MC2 LINE L1 64 1084 -4961 640 213 7 0 chr1 224215977 224216113 -57977551 + L1MC3 LINE L1 7263 7399 -386 2127 232 22 89 chr1 224216378 224217088 -57976576 - MER76 LTR ERV -25 663 1 994 209 29 119 chr1 224217844 224218255 -57975409 - MLT1A2 LTR MaLR 0 374 1 1412 181 108 42 chr1 224218700 224219297 -57974367 + L1MC2 LINE L1 1629 2364 -4200 42 36 0 0 chr1 224219300 224219356 -57974308 + AT_rich Low_complexity Low_complexity 1 56 0 4256 239 51 18 chr1 224219401 224220198 -57973466 + L1MC2 LINE L1 3979 4749 -2013 2062 78 0 46 chr1 224220198 224220479 -57973185 - AluY SINE Alu -15 296 29 4256 239 51 18 chr1 224220479 224222096 -57971568 + L1MC2 LINE L1 4749 6476 -286 29 0 0 0 chr1 224222689 224222718 -57970946 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 224222842 224222870 -57970794 + AT_rich Low_complexity Low_complexity 1 28 0 408 216 23 0 chr1 224223295 224223383 -57970281 + L1MD3 LINE L1 7892 7981 -14 360 0 0 0 chr1 224223600 224223640 -57970024 + (TG)n Simple_repeat Simple_repeat 2 41 0 261 57 0 0 chr1 224224497 224224532 -57969132 + (TG)n Simple_repeat Simple_repeat 2 36 0 1024 234 29 42 chr1 224224683 224224905 -57968759 + L1PB4 LINE L1 2648 2872 -3977 2974 94 6 53 chr1 224224905 224225394 -57968270 + L1PB1 LINE L1 5681 6146 -5 1024 234 29 42 chr1 224225394 224225723 -57967941 + L1PB4 LINE L1 2872 3199 -3650 1049 146 0 0 chr1 224225729 224225893 -57967771 - AluSg/x SINE Alu 0 312 149 10023 209 40 24 chr1 224225894 224227984 -57965680 + L1PB4 LINE L1 3184 5239 -1620 1552 217 0 3 chr1 224227984 224228284 -57965380 - AluJo SINE Alu -9 303 5 10023 209 40 24 chr1 224228284 224228453 -57965211 + L1PB4 LINE L1 5239 5404 -1455 3104 145 83 29 chr1 224228453 224229034 -57964630 - LTR9 LTR ERV1 0 612 1 10023 209 40 24 chr1 224229034 224230032 -57963632 + L1PB4 LINE L1 5404 6503 -356 360 0 0 0 chr1 224230032 224230072 -57963592 + (TA)n Simple_repeat Simple_repeat 1 40 0 10023 209 40 24 chr1 224230072 224230432 -57963232 + L1PB4 LINE L1 6503 6856 -3 181 114 29 29 chr1 224231412 224231447 -57962217 - L2 LINE L2 -101 3212 3178 1152 274 149 8 chr1 224231785 224232281 -57961383 + L2 LINE L2 1904 2469 -845 23 33 0 0 chr1 224232569 224232599 -57961065 + AT_rich Low_complexity Low_complexity 1 30 0 299 326 46 28 chr1 224232999 224233217 -57960447 - L1ME3A LINE L1 -128 6042 5821 2266 156 18 54 chr1 224233273 224233824 -57959840 - L1 LINE L1 -1394 4752 4222 248 261 60 95 chr1 224234490 224234774 -57958890 - L1MEc LINE L1 -3644 2485 2212 1775 56 0 0 chr1 224234828 224235043 -57958621 - AluY SINE Alu -11 300 86 367 289 112 33 chr1 224235090 224235395 -57958269 - L1MEc LINE L1 -4173 2137 1809 254 292 92 38 chr1 224235553 224235868 -57957796 - L1MEc LINE L1 -4770 1540 1209 248 193 18 53 chr1 224235898 224236012 -57957652 - L1MEc LINE L1 -5043 1076 967 1193 144 138 104 chr1 224237210 224237537 -57956127 - MER44D DNA MER2_type -1 608 1 180 111 0 0 chr1 224239187 224239214 -57954450 + (TG)n Simple_repeat Simple_repeat 2 28 0 1706 168 32 35 chr1 224239665 224239834 -57953830 - MER2 DNA MER2_type 0 344 176 2254 95 0 0 chr1 224239834 224240130 -57953534 - AluSg SINE Alu -14 296 1 1706 168 32 35 chr1 224240130 224240305 -57953359 - MER2 DNA MER2_type -168 176 1 5034 174 31 11 chr1 224240380 224241480 -57952184 + L1MA7 LINE L1 5175 6291 0 349 291 99 14 chr1 224242531 224242672 -57950992 + MER74B LTR ERVL 121 273 -349 34 55 0 0 chr1 224243114 224243169 -57950495 + AT_rich Low_complexity Low_complexity 1 55 0 210 363 148 0 chr1 224245897 224246032 -57947632 + L2 LINE L2 3117 3271 -1 1771 128 194 6 chr1 224246033 224246393 -57947271 - MSTA LTR MaLR 0 428 1 737 301 282 28 chr1 224246772 224247477 -57946187 + L2 LINE L2 1966 2849 -465 2420 80 0 6 chr1 224247499 224247810 -57945854 + AluY SINE Alu 3 311 0 22 70 0 0 chr1 224247853 224247896 -57945768 + AT_rich Low_complexity Low_complexity 1 43 0 980 279 67 45 chr1 224248181 224248629 -57945035 + MLT1C LTR MaLR 2 459 -8 4574 180 51 0 chr1 224249011 224250000 -57943664 + L1PA16 LINE L1 5116 6156 -10 22 56 0 0 chr1 224250249 224250285 -57943379 + AT_rich Low_complexity Low_complexity 1 36 0 414 278 68 21 chr1 224250441 224250632 -57943032 + L1M4b LINE L1 11 210 -6649 1487 271 43 113 chr1 224250865 224251512 -57942152 + L1M4b LINE L1 832 1446 -5511 1529 201 13 13 chr1 224251512 224251816 -57941848 + AluJb SINE Alu 5 308 -4 1487 271 43 113 chr1 224251816 224252514 -57941150 + L1M4b LINE L1 1446 2192 -4765 417 233 32 101 chr1 224252518 224252707 -57940957 + L1ME2 LINE L1 5980 6155 -9 5337 138 38 17 chr1 224253778 224254264 -57939400 - L1PA15 LINE L1 0 6165 5691 2280 59 42 0 chr1 224254264 224254553 -57939111 - AluY SINE Alu -10 301 1 5337 138 38 17 chr1 224254553 224255057 -57938607 - L1PA15 LINE L1 -474 5691 5136 2624 182 68 26 chr1 224255157 224255659 -57938005 - L1P LINE L1 -743 6054 5526 222 37 0 0 chr1 224255659 224255686 -57937978 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2624 182 68 26 chr1 224255686 224255865 -57937799 - L1P LINE L1 -1271 5526 5356 * 10890 237 14 11 chr1 224255860 224259194 -57934470 - L1PA13 LINE L1 -1907 4890 1536 817 245 0 0 chr1 224259195 224259354 -57934310 - L1PA13 LINE L1 -6565 222 64 1485 272 57 31 chr1 224260449 224261067 -57932597 + L1MC4a LINE L1 5273 5906 -1902 191 248 0 158 chr1 224261384 224261517 -57932147 - L2 LINE L2 -181 3091 2980 1396 228 40 47 chr1 224261805 224261985 -57931679 + L1MA9 LINE L1 5801 5981 -331 1577 131 178 47 chr1 224261985 224262306 -57931358 + THE1B LTR MaLR 1 363 -1 1396 228 40 47 chr1 224262306 224262598 -57931066 + L1MA9 LINE L1 5981 6270 -42 22 70 0 0 chr1 224262845 224262888 -57930776 + AT_rich Low_complexity Low_complexity 1 43 0 245 114 0 0 chr1 224263328 224263372 -57930292 - LTR66 LTR ERVL -173 437 394 248 154 19 0 chr1 224263372 224263424 -57930240 + (TA)n Simple_repeat Simple_repeat 2 54 0 31 0 0 0 chr1 224263433 224263464 -57930200 + AT_rich Low_complexity Low_complexity 1 31 0 955 162 26 0 chr1 224263620 224263774 -57929890 + L1PB4 LINE L1 5986 6143 -13 27 29 0 0 chr1 224263913 224263947 -57929717 + AT_rich Low_complexity Low_complexity 1 34 0 270 0 0 0 chr1 224263950 224263980 -57929684 + (CA)n Simple_repeat Simple_repeat 1 30 0 1871 94 21 94 chr1 224264177 224264507 -57929157 - AluYb8 SINE Alu -12 306 1 287 283 57 38 chr1 224265015 224265121 -57928543 - L2 LINE L2 -1 3312 3205 242 261 0 68 chr1 224265260 224265348 -57928316 - AluYa8 SINE Alu -120 180 99 34 24 0 0 chr1 224265863 224265904 -57927760 + AT_rich Low_complexity Low_complexity 1 41 0 699 231 40 20 chr1 224269863 224270110 -57923554 + L1M4 LINE L1 4397 4648 -1498 464 108 0 0 chr1 224270180 224270245 -57923419 - THE1C LTR MaLR -2 373 309 659 206 36 54 chr1 224271315 224271538 -57922126 - L1MB8 LINE L1 0 6178 5960 644 209 0 18 chr1 224271612 224271775 -57921889 - L1MB8 LINE L1 -11 6167 6008 823 166 21 46 chr1 224271779 224271985 -57921679 - L1MB8 LINE L1 -230 5948 5752 253 227 91 0 chr1 224272016 224272104 -57921560 + L1M4 LINE L1 5185 5280 -866 2517 4 4 0 chr1 224272104 224272413 -57921251 - AluYa5 SINE Alu 0 310 1 578 106 0 0 chr1 224272516 224272601 -57921063 + AluSc SINE Alu 219 303 -6 311 294 90 11 chr1 224272669 224272846 -57920818 - L1M4 LINE L1 -1890 4256 4066 1012 316 102 52 chr1 224273153 224274034 -57919630 - L2 LINE L2 -860 2454 1530 48 43 0 0 chr1 224274311 224274380 -57919284 + AT_rich Low_complexity Low_complexity 1 69 0 213 389 53 0 chr1 224274688 224274819 -57918845 - L2 LINE L2 -1098 2216 2079 21 36 0 0 chr1 224275210 224275238 -57918426 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 224275425 224275455 -57918209 + AT_rich Low_complexity Low_complexity 1 30 0 193 315 81 45 chr1 224275513 224275624 -57918040 - L2 LINE L2 0 3313 3199 195 322 35 35 chr1 224276128 224276215 -57917449 - L2 LINE L2 0 3272 3186 21 71 0 0 chr1 224276848 224276890 -57916774 + AT_rich Low_complexity Low_complexity 1 42 0 23 78 0 0 chr1 224276972 224277023 -57916641 + AT_rich Low_complexity Low_complexity 1 51 0 272 260 40 80 chr1 224278184 224278284 -57915380 + MER5A DNA MER1_type 35 130 -59 2055 101 31 7 chr1 224278289 224278576 -57915088 - AluSc SINE Alu -13 296 3 339 25 0 0 chr1 224278735 224278775 -57914889 + (TA)n Simple_repeat Simple_repeat 1 40 0 1604 88 5 0 chr1 224278777 224278993 -57914671 - AluY SINE Alu -20 291 75 897 360 63 22 chr1 224279456 224280043 -57913621 - MLT2F LTR ERVL -1 662 52 1055 227 113 32 chr1 224280172 224280578 -57913086 - ERVL-F LTR ERVL -182 5582 5144 304 151 0 139 chr1 224280580 224280640 -57913024 + MADE1 DNA Mariner 1 47 -33 1902 142 0 0 chr1 224280640 224280922 -57912742 - AluSx SINE Alu -30 282 1 304 151 0 139 chr1 224280922 224280947 -57912717 + MADE1 DNA Mariner 47 74 -6 1461 139 24 28 chr1 224280953 224281204 -57912460 + AluSg SINE Alu 54 303 -7 2456 309 65 10 chr1 224281209 224282451 -57911213 - ERVL-F LTR ERVL -633 5131 3792 796 285 67 38 chr1 224282451 224282767 -57910897 - MLT2F LTR ERVL -312 351 27 503 285 120 101 chr1 224282745 224282993 -57910671 - MLT1E LTR MaLR -228 365 106 * 399 21 0 0 chr1 224282993 224283041 -57910623 + (CA)n Simple_repeat Simple_repeat 1 48 0 503 285 120 101 chr1 224283041 224283150 -57910514 - MLT1E LTR MaLR -487 106 1 1731 177 0 22 chr1 224283955 224284271 -57909393 - AluJb SINE Alu -3 309 1 784 227 39 20 chr1 224284808 224285011 -57908653 + MER20 DNA MER1_type 6 212 -7 400 374 19 24 chr1 224285120 224285326 -57908338 - LTR33 LTR ERVL -305 216 12 298 206 8 122 chr1 224286702 224286833 -57906831 + MER110A LTR ERV1 72 187 -281 707 318 45 3 chr1 224286913 224287224 -57906440 + MER110 LTR ERV1 166 489 -2 1024 219 51 63 chr1 224287801 224288116 -57905548 + MER67D LTR ERV1 1 311 -203 392 246 15 54 chr1 224289629 224289759 -57903905 - MER89 LTR ERV1 0 559 435 1697 169 82 20 chr1 224289759 224290102 -57903562 - THE1B LTR MaLR 0 364 1 10366 125 14 3 chr1 224290102 224291665 -57901999 - THE1B-int LTR MaLR 0 1580 1 1944 151 75 20 chr1 224291665 224292010 -57901654 - THE1B LTR MaLR 0 364 1 803 272 18 14 chr1 224292023 224292240 -57901424 - MER89 LTR ERV1 -145 414 197 336 206 14 0 chr1 224292226 224292299 -57901365 - MER89 LTR ERV1 -483 76 3 * 287 360 88 8 chr1 224293186 224293425 -57900239 + L2 LINE L2 2240 2497 -817 546 348 106 16 chr1 224293681 224294106 -57899558 + L2 LINE L2 2493 2955 -359 202 288 98 65 chr1 224294210 224294394 -57899270 + L2 LINE L2 3119 3308 -5 216 342 75 8 chr1 224295076 224295196 -57898468 - MIR SINE MIR -70 192 65 28 29 0 0 chr1 224295743 224295778 -57897886 + AT_rich Low_complexity Low_complexity 1 35 0 757 44 0 0 chr1 224295781 224295871 -57897793 - L1PA8 LINE L1 -13 6159 6070 357 82 0 0 chr1 224296363 224296412 -57897252 - MADE1 DNA Mariner 0 80 32 816 309 95 9 chr1 224296652 224296969 -57896695 - MER74C LTR ERVL -18 442 99 23 0 0 0 chr1 224297436 224297459 -57896205 + AT_rich Low_complexity Low_complexity 1 23 0 293 185 49 12 chr1 224298348 224298429 -57895235 + L1M3 LINE L1 4256 4339 -1807 * 336 234 14 0 chr1 224298418 224298522 -57895142 - L1MA9 LINE L1 -969 5177 5072 2884 211 64 16 chr1 224298539 224299359 -57894305 + L1MA9 LINE L1 5197 6056 -256 258 164 0 0 chr1 224299362 224299417 -57894247 + (TA)n Simple_repeat Simple_repeat 2 56 0 207 233 11 22 chr1 224299493 224299583 -57894081 + (TA)n Simple_repeat Simple_repeat 1 89 0 501 227 146 0 chr1 224299610 224299795 -57893869 + L1MA9 LINE L1 6062 6273 -39 435 178 28 19 chr1 224299803 224299910 -57893754 + Charlie5 DNA MER1_type 2366 2473 -139 3884 220 42 20 chr1 224299959 224301079 -57892585 + L1M3 LINE L1 4316 5470 -743 323 336 120 12 chr1 224301483 224302001 -57891663 - L1M4 LINE L1 -925 5221 4648 705 182 19 38 chr1 224302058 224302217 -57891447 + FRAM SINE Alu 1 154 -22 23 33 0 0 chr1 224302368 224302398 -57891266 + AT_rich Low_complexity Low_complexity 1 30 0 290 253 53 0 chr1 224302431 224302526 -57891138 - L1 LINE L1 -1402 4744 4645 1851 249 66 28 chr1 224302554 224303313 -57890351 - L1 LINE L1 -1839 4307 3520 1666 167 7 7 chr1 224303569 224303869 -57889795 + AluSx SINE Alu 12 311 -1 28 91 0 0 chr1 224304115 224304192 -57889472 + AT_rich Low_complexity Low_complexity 1 77 0 210 143 0 0 chr1 224304205 224304240 -57889424 + (TG)n Simple_repeat Simple_repeat 1 35 0 607 125 0 0 chr1 224304859 224304947 -57888717 - AluSg/x SINE Alu -9 301 214 1822 127 0 0 chr1 224304948 224305208 -57888456 - AluSq SINE Alu -53 260 1 2141 130 0 0 chr1 224306107 224306415 -57887249 + AluSg SINE Alu 1 308 -2 184 292 62 0 chr1 224306445 224306510 -57887154 + MIR SINE MIR 86 154 -108 182 152 0 22 chr1 224306546 224306592 -57887072 + (TG)n Simple_repeat Simple_repeat 2 46 0 5267 217 29 23 chr1 224306632 224307866 -57885798 - MER52A LTR ERV1 -346 1409 38 309 186 0 0 chr1 224307878 224307948 -57885716 + (TG)n Simple_repeat Simple_repeat 2 71 0 12809 207 33 13 chr1 224307964 224312083 -57881581 - L1PB3 LINE L1 -113 6757 2565 675 209 38 142 chr1 224312084 224312323 -57881341 + AluJb SINE Alu 1 214 -98 343 297 10 20 chr1 224313285 224313386 -57880278 + MIR3 SINE MIR 57 156 -52 23 33 0 0 chr1 224314738 224314768 -57878896 + AT_rich Low_complexity Low_complexity 1 30 0 30 0 0 0 chr1 224315334 224315364 -57878300 + AT_rich Low_complexity Low_complexity 1 30 0 250 255 43 0 chr1 224316355 224316449 -57877215 + (TA)n Simple_repeat Simple_repeat 2 99 0 1229 204 59 46 chr1 224316459 224316763 -57876901 - AluJb SINE Alu 0 312 5 271 249 92 64 chr1 224317431 224317646 -57876018 - MLT1H LTR MaLR -1 548 331 256 245 0 92 chr1 224317756 224317854 -57875810 - MLT1H LTR MaLR -378 171 83 184 357 48 12 chr1 224318313 224318397 -57875267 + L2 LINE L2 3150 3236 -36 6602 29 0 2 chr1 224319399 224320184 -57873480 + L1PA4 LINE L1 5373 6155 0 553 52 30 52 chr1 224321356 224321491 -57872173 + (TA)n Simple_repeat Simple_repeat 1 132 0 283 357 72 11 chr1 224321812 224322007 -57871657 - MIR SINE MIR -16 246 41 26 30 0 0 chr1 224322078 224322111 -57871553 + AT_rich Low_complexity Low_complexity 1 33 0 2256 119 0 0 chr1 224322530 224322841 -57870823 - AluSq SINE Alu 0 313 3 3940 200 54 2 chr1 224322901 224323794 -57869870 - L1PB4 LINE L1 -1 6155 5213 572 179 8 0 chr1 224323970 224324093 -57869571 + L1MA8 LINE L1 6168 6291 0 1095 277 29 34 chr1 224325607 224326006 -57867658 - MLT1H-int LTR MaLR -42 1693 955 279 236 0 0 chr1 224326369 224326424 -57867240 - MER31A LTR ERV1 -324 161 107 978 240 11 21 chr1 224326432 224326715 -57866949 + MER31A LTR ERV1 204 483 -2 22 0 0 0 chr1 224326773 224326795 -57866869 + AT_rich Low_complexity Low_complexity 1 22 0 220 284 179 79 chr1 224327261 224327351 -57866313 - MIR SINE MIR 0 262 182 2611 189 19 15 chr1 224327351 224327886 -57865778 - MER34 LTR ERV1 -2 540 4 220 284 179 79 chr1 224327886 224328024 -57865640 - MIR SINE MIR -80 182 11 22 0 0 0 chr1 224329561 224329583 -57864081 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 224329629 224329658 -57864006 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 224329708 224329738 -57863926 + AT_rich Low_complexity Low_complexity 1 30 0 2142 92 3 0 chr1 224329773 224330091 -57863573 + AluY SINE Alu 1 319 0 23 68 0 0 chr1 224330097 224330141 -57863523 + AT_rich Low_complexity Low_complexity 1 44 0 483 304 68 5 chr1 224330370 224330561 -57863103 + MIR SINE MIR 2 204 -58 6483 100 125 34 chr1 224330844 224332017 -57861647 + pTR5 LTR ERV1 741 2020 -418 265 262 39 29 chr1 224332017 224332120 -57861544 + LTR30 LTR ERV1 539 642 -80 1512 110 0 0 chr1 224332127 224332345 -57861319 + pTR5 LTR ERV1 175 392 -2046 25 0 0 0 chr1 224333774 224333799 -57859865 + AT_rich Low_complexity Low_complexity 1 25 0 1916 94 0 18 chr1 224333958 224334234 -57859430 + AluY SINE Alu 39 309 -2 233 356 96 10 chr1 224335393 224335497 -57858167 + L2 LINE L2 3160 3272 0 1896 127 0 7 chr1 224335914 224336189 -57857475 + AluSx SINE Alu 1 273 -39 390 21 0 0 chr1 224336195 224336242 -57857422 + (CA)n Simple_repeat Simple_repeat 1 47 0 279 171 73 49 chr1 224336354 224336436 -57857228 + MER88 LTR ERVL 80 163 -301 * 1198 251 59 36 chr1 224336368 224336839 -57856825 - MER74B LTR ERVL -75 547 66 2045 129 7 0 chr1 224337187 224337481 -57856183 - AluSg SINE Alu -14 296 1 1687 64 15 0 chr1 224337569 224337962 -57855702 - L1PA4 LINE L1 -4 6151 5579 1288 69 0 0 chr1 224338043 224338203 -57855461 + AluY SINE Alu 141 300 -11 210 212 15 15 chr1 224338279 224338345 -57855319 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 317 93 19 0 chr1 224339770 224339824 -57853840 + (TCC)n Simple_repeat Simple_repeat 3 57 0 521 234 12 120 chr1 224339980 224340034 -57853630 - L1ME LINE L1 -572 5870 5812 1429 151 55 81 chr1 224340034 224340417 -57853247 - THE1C LTR MaLR 0 375 3 521 234 12 120 chr1 224340417 224340696 -57852968 - L1ME LINE L1 -630 5812 5573 702 242 53 119 chr1 224340730 224340890 -57852774 - L1MCa LINE L1 -3591 2835 2666 1695 200 31 55 chr1 224340890 224341366 -57852298 + MLT1C LTR MaLR 1 465 -2 702 242 53 119 chr1 224341366 224341775 -57851889 - L1MCa LINE L1 -3760 2666 2295 8076 210 16 10 chr1 224341797 224343390 -57850274 + L1M1 LINE L1 13 1615 -5950 24 32 0 0 chr1 224343401 224343432 -57850232 + AT_rich Low_complexity Low_complexity 1 31 0 36 0 0 0 chr1 224343476 224343512 -57850152 + AT_rich Low_complexity Low_complexity 1 36 0 5130 132 18 31 chr1 224343512 224344012 -57849652 + L1MA2 LINE L1 5237 5742 -558 2203 70 0 20 chr1 224344012 224344310 -57849354 + AluY SINE Alu 1 292 -19 5130 132 18 31 chr1 224344310 224344832 -57848832 + L1MA2 LINE L1 5742 6300 0 1299 251 52 6 chr1 224344946 224345292 -57848372 + MLT1A1 LTR MaLR 4 365 0 304 75 0 0 chr1 224345821 224345861 -57847803 + MADE1 DNA Mariner 1 40 -40 2074 107 18 0 chr1 224346551 224346873 -57846791 - AluSq SINE Alu 0 327 1 21 0 0 0 chr1 224347022 224347043 -57846621 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr1 224347475 224347519 -57846145 + AT_rich Low_complexity Low_complexity 1 44 0 185 333 42 28 chr1 224347980 224348052 -57845612 + L2 LINE L2 2326 2398 -916 189 74 0 0 chr1 224348257 224348284 -57845380 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 344 356 60 50 chr1 224348288 224348746 -57844918 + L2 LINE L2 2636 3151 -162 222 208 0 0 chr1 224348784 224348837 -57844827 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 218 259 9 111 chr1 224348839 224348947 -57844717 + L2 LINE L2 3179 3275 -38 259 343 175 15 chr1 224349120 224349388 -57844276 + L2 LINE L2 1792 2102 -1212 1221 35 0 0 chr1 224349579 224349724 -57843940 - L1PA5 LINE L1 -6 6148 6004 185 396 9 19 chr1 224350197 224350303 -57843361 + L2 LINE L2 297 401 -2913 291 404 21 32 chr1 224350448 224350730 -57842934 + L2 LINE L2 559 837 -2477 238 360 37 30 chr1 224351121 224351285 -57842379 + L2 LINE L2 1002 1166 -2148 335 212 0 24 chr1 224351288 224351373 -57842291 + LTR30 LTR ERV1 542 624 -98 240 35 0 0 chr1 224351377 224351406 -57842258 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 233 339 169 19 chr1 224351657 224351970 -57841694 + L2 LINE L2 2090 2449 -865 324 0 0 0 chr1 224352168 224352204 -57841460 + (ATG)n Simple_repeat Simple_repeat 2 37 0 503 177 0 0 chr1 224352215 224352294 -57841370 - FRAM SINE Alu -27 149 71 189 324 99 18 chr1 224352590 224352701 -57840963 + L2 LINE L2 2920 3039 -233 243 0 0 0 chr1 224352951 224352978 -57840686 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 92 0 0 chr1 224353225 224353290 -57840374 + AT_rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr1 224354004 224354026 -57839638 + AT_rich Low_complexity Low_complexity 1 22 0 313 376 41 0 chr1 224354658 224354867 -57838797 + MLT1J2 LTR MaLR 7 224 -226 245 302 10 10 chr1 224354904 224355000 -57838664 + MLT1J1 LTR MaLR 351 446 0 195 100 0 0 chr1 224355701 224355731 -57837933 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 70 0 0 chr1 224355875 224355918 -57837746 + AT_rich Low_complexity Low_complexity 1 43 0 740 187 133 17 chr1 224357863 224358104 -57835560 - MER33 DNA MER1_type -22 302 34 1990 137 135 5 chr1 224358104 224358483 -57835181 - MSTA LTR MaLR 0 428 1 2384 136 23 48 chr1 224359540 224359980 -57833684 - MSTB1 LTR MaLR -1 431 3 198 241 138 23 chr1 224361281 224361368 -57832296 + L2 LINE L2 642 738 -2576 1047 66 0 0 chr1 224363030 224363167 -57830497 - L1PA7 LINE L1 -1 6153 6017 196 363 137 36 chr1 224363505 224363811 -57829853 + L2 LINE L2 2204 2540 -774 963 209 0 0 chr1 224365337 224365519 -57828145 - FRAM SINE Alu -1 175 1 21 0 0 0 chr1 224365819 224365840 -57827824 + AT_rich Low_complexity Low_complexity 1 21 0 286 283 136 11 chr1 224365957 224366141 -57827523 - HAL1 LINE L1 0 2507 2301 514 293 86 59 chr1 224366697 224367222 -57826442 - HAL1 LINE L1 -710 1797 1259 5344 174 39 9 chr1 224367404 224368376 -57825288 - L1MA5 LINE L1 -4 6296 5270 258 32 0 0 chr1 224368376 224368407 -57825257 + (TG)n Simple_repeat Simple_repeat 2 32 0 5344 174 39 9 chr1 224368407 224368898 -57824766 - L1MA5 LINE L1 -1030 5270 4796 602 186 14 55 chr1 224369123 224369268 -57824396 - L1MB1 LINE L1 -83 6106 5968 * 770 208 10 46 chr1 224369267 224369464 -57824200 + L1MA10 LINE L1 6133 6322 -12 189 74 0 0 chr1 224369476 224369503 -57824161 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 372 53 0 chr1 224369811 224369905 -57823759 + L2 LINE L2 3134 3232 -40 21 0 0 0 chr1 224370222 224370243 -57823421 + AT_rich Low_complexity Low_complexity 1 21 0 2321 97 3 0 chr1 224370632 224370941 -57822723 + AluY SINE Alu 1 310 -1 287 106 64 0 chr1 224371108 224371155 -57822509 - L1PA13 LINE L1 -83 6783 6734 * 4616 186 21 5 chr1 224371153 224372618 -57821046 - L1PA13 LINE L1 -359 6507 5023 5941 188 57 104 chr1 224372646 224374287 -57819377 + MER52A LTR ERV1 191 1755 0 8290 206 55 14 chr1 224374287 224376290 -57817374 - L1PA13 LINE L1 -1819 5030 2947 2004 189 19 32 chr1 224376915 224377387 -57816277 - L1PA13 LINE L1 -3953 2896 2431 458 325 47 64 chr1 224377389 224377731 -57815933 + L2 LINE L2 2963 3298 -15 21 36 0 0 chr1 224377916 224377944 -57815720 + AT_rich Low_complexity Low_complexity 1 28 0 2121 128 3 0 chr1 224377969 224378273 -57815391 + AluSc SINE Alu 1 305 -4 25 75 0 0 chr1 224378373 224378426 -57815238 + AT_rich Low_complexity Low_complexity 1 53 0 339 109 0 0 chr1 224378829 224378875 -57814789 - THE1A LTR MaLR -2 353 308 22 0 0 0 chr1 224379918 224379940 -57813724 + AT_rich Low_complexity Low_complexity 1 22 0 284 299 96 27 chr1 224380377 224380564 -57813100 - ERVL LTR ERVL -454 5310 5111 3105 181 43 21 chr1 224380647 224381413 -57812251 - L1MA7 LINE L1 -348 5943 5168 738 101 0 0 chr1 224381444 224381553 -57812111 + L1MA3 LINE L1 6197 6305 0 7402 197 33 7 chr1 224381856 224383321 -57810343 - MSTA-int LTR MaLR -133 1518 16 1619 223 75 2 chr1 224383328 224383727 -57809937 - MSTA LTR MaLR 0 428 1 3631 232 79 6 chr1 224383819 224384835 -57808829 + L1P LINE L1 2511 3600 -2546 * 26550 42 2 1 chr1 224384833 224388919 -57804745 + L1PA4 LINE L1 2064 6155 0 2316 174 81 6 chr1 224388924 224389394 -57804270 + L1P LINE L1 3608 4112 -2034 21 0 0 0 chr1 224391310 224391331 -57802333 + AT_rich Low_complexity Low_complexity 1 21 0 2299 60 7 7 chr1 224392475 224392773 -57800891 + AluY SINE Alu 1 298 -13 22 0 0 0 chr1 224393795 224393817 -57799847 + AT_rich Low_complexity Low_complexity 1 22 0 355 253 99 55 chr1 224395278 224395460 -57798204 + L1ME3A LINE L1 3891 4080 -2066 23 68 0 0 chr1 224395584 224395628 -57798036 + AT_rich Low_complexity Low_complexity 1 44 0 308 303 138 4 chr1 224395664 224395918 -57797746 + L1ME3A LINE L1 4256 4543 -1603 513 292 103 34 chr1 224396066 224396573 -57797091 + L1ME3A LINE L1 4840 5381 -765 435 245 76 72 chr1 224396581 224396818 -57796846 + L1ME3A LINE L1 5918 6155 -15 1165 99 0 0 chr1 224396862 224397013 -57796651 + AluSq/x SINE Alu 1 151 -162 244 291 0 0 chr1 224397051 224397137 -57796527 + L1ME3 LINE L1 685 770 -5300 * 1257 288 66 3 chr1 224397135 224397743 -57795921 + L1ME3 LINE L1 4019 4664 -1416 334 291 109 0 chr1 224397746 224397911 -57795753 + L1ME3 LINE L1 4704 4886 -1194 1225 324 72 19 chr1 224398067 224398914 -57794750 + L1ME3 LINE L1 5188 6087 -9 23 68 0 0 chr1 224399042 224399086 -57794578 + AT_rich Low_complexity Low_complexity 1 44 0 612 146 32 8 chr1 224399351 224399474 -57794190 - L1MB1 LINE L1 -17 6151 6026 26 30 0 0 chr1 224399502 224399535 -57794129 + AT_rich Low_complexity Low_complexity 1 33 0 805 161 68 19 chr1 224399566 224399727 -57793937 - L1MB1 LINE L1 -134 6034 5866 409 220 81 2 chr1 224399727 224399833 -57793831 - MER61D LTR ERV1 -18 483 387 1701 185 46 0 chr1 224400020 224400366 -57793298 - L1MB1 LINE L1 -297 5871 5510 225 222 0 0 chr1 224400367 224400412 -57793252 - L1MB1 LINE L1 -648 5535 5491 516 350 60 56 chr1 224402386 224403293 -57790371 - ERVL LTR ERVL -4041 1723 814 593 179 0 0 chr1 224403935 224404041 -57789623 - LOR1a LTR ERV1 -128 369 264 575 238 87 12 chr1 224404049 224404221 -57789443 - LOR1b LTR ERV1 -276 185 1 32 26 0 0 chr1 224404522 224404561 -57789103 + AT_rich Low_complexity Low_complexity 1 39 0 2347 91 0 3 chr1 224405122 224405431 -57788233 + AluY SINE Alu 1 308 -3 1806 123 0 0 chr1 224405697 224405948 -57787716 + AluSg SINE Alu 1 251 -59 1744 164 26 57 chr1 224407058 224407443 -57786221 - THE1C LTR MaLR -2 373 1 9220 149 10 30 chr1 224407443 224409056 -57784608 - THE1C-int LTR MaLR 0 1580 1 1607 156 62 56 chr1 224409056 224409429 -57784235 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr1 224409686 224409714 -57783950 + AT_rich Low_complexity Low_complexity 1 28 0 418 307 151 18 chr1 224409730 224409955 -57783709 + L1ME3A LINE L1 5629 5883 -287 1096 120 0 0 chr1 224410815 224410992 -57782672 + AluSg/x SINE Alu 133 309 0 341 191 44 7 chr1 224411652 224411788 -57781876 + (TA)n Simple_repeat Simple_repeat 1 141 0 234 116 0 0 chr1 224411836 224411879 -57781785 + (TA)n Simple_repeat Simple_repeat 2 44 0 1044 188 55 18 chr1 224411880 224412098 -57781566 - AluJo SINE Alu -81 231 6 233 183 17 0 chr1 224412240 224412300 -57781364 + (TA)n Simple_repeat Simple_repeat 1 61 0 207 69 0 0 chr1 224412367 224412396 -57781268 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 746 314 67 13 chr1 224412622 224412952 -57780712 - MLT1E3 LTR MaLR -41 583 195 28 79 0 0 chr1 224413826 224413889 -57779775 + AT_rich Low_complexity Low_complexity 1 63 0 227 320 39 39 chr1 224414130 224414233 -57779431 - MIR3 SINE MIR -48 160 58 1806 123 0 0 chr1 224414691 224414942 -57778722 - AluSg SINE Alu -59 251 1 2347 91 0 3 chr1 224415208 224415517 -57778147 - AluY SINE Alu -3 308 1 32 26 0 0 chr1 224416078 224416117 -57777547 + AT_rich Low_complexity Low_complexity 1 39 0 1708 203 118 5 chr1 224416418 224416832 -57776832 + LOR1b LTR ERV1 1 461 0 7734 96 4 5 chr1 224417714 224418789 -57774875 + HERV17 LTR ERV1 2066 3139 -5260 6185 100 9 7 chr1 224418796 224419669 -57773995 + HERV17 LTR ERV1 4080 4954 -3445 1946 171 65 43 chr1 224419645 224420412 -57773252 + HERV17 LTR ERV1 919 1720 -5176 * 4226 106 36 2 chr1 224420407 224421019 -57772645 + HERV17 LTR ERV1 7757 8389 -10 264 250 0 0 chr1 224421029 224421081 -57772583 + LTR30 LTR ERV1 1 52 -670 1336 76 0 0 chr1 224421085 224421257 -57772407 + LTR12 LTR ERV1 123 294 -420 2833 155 149 4 chr1 224421257 224421806 -57771858 - L1M1 LINE L1 -5180 2385 1757 293 152 30 0 chr1 224421806 224421872 -57771792 + CT-rich Low_complexity Low_complexity 4 71 0 548 192 171 20 chr1 224421901 224422047 -57771617 - L1M1 LINE L1 -5760 1805 1638 1679 183 4 169 chr1 224422067 224422175 -57771489 - L1M1 LINE L1 -7023 542 418 1550 199 14 0 chr1 224422175 224422451 -57771213 + AluSx SINE Alu 1 280 -32 1008 109 23 6 chr1 224422451 224422625 -57771039 + GA-rich Low_complexity Low_complexity 4 180 0 1679 183 4 169 chr1 224422625 224423007 -57770657 - L1M1 LINE L1 -7145 420 132 923 282 105 12 chr1 224422985 224423308 -57770356 - L1M4b LINE L1 -6496 363 11 * 1781 123 16 0 chr1 224423939 224424192 -57769472 - AluSc SINE Alu -14 295 39 26 50 0 0 chr1 224424195 224424235 -57769429 + AT_rich Low_complexity Low_complexity 1 40 0 1506 282 43 9 chr1 224424417 224424981 -57768683 + HsTC2c DNA Tc2 143 725 -4 24 53 0 0 chr1 224425578 224425616 -57768048 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr1 224426007 224426035 -57767629 + AT_rich Low_complexity Low_complexity 1 28 0 2185 186 31 19 chr1 224426983 224427462 -57766202 + L1 LINE L1 4207 4691 -1455 21 57 0 0 chr1 224427659 224427694 -57765970 + AT_rich Low_complexity Low_complexity 1 35 0 438 346 123 0 chr1 224428268 224428479 -57765185 + MIR SINE MIR 2 238 -24 21 57 0 0 chr1 224428630 224428665 -57764999 + AT_rich Low_complexity Low_complexity 1 35 0 1344 224 17 7 chr1 224429995 224430285 -57763379 - AluJo SINE Alu -19 293 1 241 199 42 66 chr1 224430323 224430489 -57763175 + (TATAA)n Simple_repeat Simple_repeat 1 162 0 2187 110 0 13 chr1 224430585 224430895 -57762769 + AluSc SINE Alu 1 306 -3 278 259 9 27 chr1 224430941 224431053 -57762611 + (TA)n Simple_repeat Simple_repeat 1 110 0 229 232 11 53 chr1 224431054 224431149 -57762515 - L1MC4 LINE L1 -1339 6703 6613 200 262 267 19 chr1 224431757 224431963 -57761701 + L2 LINE L2 539 795 -2519 1997 133 10 0 chr1 224432319 224432620 -57761044 + AluSc SINE Alu 1 304 -5 298 271 85 0 chr1 224432926 224433044 -57760620 + L1ME LINE L1 5353 5480 -686 195 42 0 0 chr1 224433254 224433278 -57760386 + (CA)n Simple_repeat Simple_repeat 1 24 0 1414 156 7 42 chr1 224433491 224433779 -57759885 - L1PA16 LINE L1 -2 6164 5887 2100 125 3 10 chr1 224433896 224434209 -57759455 + AluSp SINE Alu 1 311 -2 7699 28 1 0 chr1 224435059 224435988 -57757676 - L1P LINE L1 -844 5302 4385 6856 38 2 5 chr1 224435988 224436839 -57756825 + L1PA3 LINE L1 5306 6155 0 372 77 0 0 chr1 224437024 224437076 -57756588 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1687 172 54 18 chr1 224437483 224437814 -57755850 - MER61A LTR ERV1 0 343 1 22 0 0 0 chr1 224438296 224438318 -57755346 + AT_rich Low_complexity Low_complexity 1 22 0 3479 126 34 0 chr1 224439161 224439695 -57753969 + MER41A LTR ERV1 3 554 0 186 43 0 0 chr1 224439869 224439892 -57753772 + (TG)n Simple_repeat Simple_repeat 2 24 0 1091 225 64 56 chr1 224440395 224440777 -57752887 - MER67C LTR ERV1 -253 261 1 1096 98 0 0 chr1 224440842 224440985 -57752679 + AluSc SINE Alu 155 297 -12 22 35 0 0 chr1 224441636 224441665 -57751999 + AT_rich Low_complexity Low_complexity 1 29 0 1719 158 3 11 chr1 224442122 224442406 -57751258 - AluSx SINE Alu -30 282 1 845 264 37 68 chr1 224442612 224443021 -57750643 + MSTD LTR MaLR 1 396 0 806 238 0 6 chr1 224444081 224444253 -57749411 + MER58A DNA MER1_type 46 216 -8 2110 122 0 13 chr1 224444860 224445163 -57748501 + AluSq SINE Alu 1 299 -14 538 218 10 47 chr1 224445413 224445606 -57748058 - MER53 DNA DNA -1 188 3 260 284 11 32 chr1 224446532 224446627 -57747037 + GA-rich Low_complexity Low_complexity 2 94 0 203 403 20 55 chr1 224446734 224446935 -57746729 - L2 LINE L2 -362 2952 2759 21 0 0 0 chr1 224446956 224446977 -57746687 + AT_rich Low_complexity Low_complexity 1 21 0 495 309 209 34 chr1 224447023 224447702 -57745962 - L2 LINE L2 -600 2714 1917 2138 64 8 0 chr1 224447986 224448251 -57745413 - AluY SINE Alu -11 300 34 307 241 133 0 chr1 224448398 224448481 -57745183 - L1MC4 LINE L1 -1350 6692 6599 239 374 88 6 chr1 224448539 224448721 -57744943 + MIR SINE MIR 2 198 -64 29 60 0 0 chr1 224448744 224448794 -57744870 + AT_rich Low_complexity Low_complexity 1 50 0 365 350 63 36 chr1 224450963 224451266 -57742398 + L1M4 LINE L1 4681 4991 -1155 26 64 0 0 chr1 224451505 224451552 -57742112 + AT_rich Low_complexity Low_complexity 1 47 0 232 217 29 29 chr1 224451917 224451986 -57741678 + L1MEd LINE L1 156 224 -5981 480 286 181 5 chr1 224452724 224452923 -57740741 + MIR SINE MIR 12 245 -17 237 296 112 24 chr1 224453044 224453169 -57740495 + L2 LINE L2 3137 3272 0 1453 261 20 31 chr1 224453492 224453883 -57739781 - MLT1E LTR MaLR 0 593 207 227 226 155 24 chr1 224454001 224454085 -57739579 - MLT1E LTR MaLR -430 163 69 2442 167 2 2 chr1 224454230 224454649 -57739015 - L1PA16 LINE L1 -4 6162 5744 686 328 71 44 chr1 224455479 224456238 -57737426 - L2 LINE L2 0 3313 2531 335 218 75 15 chr1 224456239 224456372 -57737292 + L1MEd LINE L1 1579 1719 -4677 32 43 0 0 chr1 224456425 224456471 -57737193 + AT_rich Low_complexity Low_complexity 1 46 0 208 250 33 0 chr1 224456596 224456656 -57737008 + (CA)n Simple_repeat Simple_repeat 2 63 0 10158 48 1 0 chr1 224456990 224459048 -57734616 + L1PA4 LINE L1 4089 6155 0 1888 127 0 28 chr1 224459075 224459394 -57734270 + AluSx SINE Alu 1 311 0 292 319 131 31 chr1 224459437 224459666 -57733998 + L1ME LINE L1 5500 5751 -419 188 67 33 0 chr1 224459796 224459826 -57733838 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 8691 222 24 13 chr1 224459827 224461583 -57732081 - L1PA16 LINE L1 -12 6154 4338 1851 128 4 0 chr1 224461583 224461841 -57731823 - AluSp SINE Alu -54 259 1 8691 222 24 13 chr1 224461841 224463260 -57730404 - L1PA16 LINE L1 -1828 4338 2937 1727 253 45 4 chr1 224463268 224463818 -57729846 + L1PA16 LINE L1 2347 2919 -3227 23 0 0 0 chr1 224466053 224466076 -57727588 + AT_rich Low_complexity Low_complexity 1 23 0 194 387 32 32 chr1 224466118 224466242 -57727422 - L2 LINE L2 -58 3214 3091 211 208 0 78 chr1 224467007 224467084 -57726580 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 707 287 62 26 chr1 224467146 224467418 -57726246 - MLT1E3 LTR MaLR -1 623 342 * 782 253 6 0 chr1 224467412 224467582 -57726082 - MLT1E3 LTR MaLR -453 171 1 34 79 0 0 chr1 224468564 224468640 -57725024 + AT_rich Low_complexity Low_complexity 1 76 0 24 32 0 0 chr1 224468850 224468881 -57724783 + AT_rich Low_complexity Low_complexity 1 31 0 498 307 117 45 chr1 224469309 224469599 -57724065 - L2 LINE L2 0 3313 3003 11923 181 22 11 chr1 224469611 224472598 -57721066 + L1PA12 LINE L1 1106 4125 -3459 296 321 91 43 chr1 224472601 224472788 -57720876 - L2 LINE L2 -1400 1914 1719 820 247 90 37 chr1 224472791 224473224 -57720440 - MER69 DNA AcHobo -16 2510 2055 920 291 89 6 chr1 224473358 224473829 -57719835 - L1MCc LINE L1 -4460 2662 2153 260 250 38 76 chr1 224473862 224474098 -57719566 - L1MCc LINE L1 -4892 2051 1825 2346 93 3 0 chr1 224474138 224474439 -57719225 + AluSp SINE Alu 3 304 -9 180 0 0 0 chr1 224474439 224474459 -57719205 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 207 0 0 0 chr1 224474458 224474481 -57719183 + (TG)n Simple_repeat Simple_repeat 2 24 0 752 300 129 16 chr1 224474573 224474785 -57718879 - L1MCc LINE L1 -4887 1536 1349 249 57 0 0 chr1 224474785 224474820 -57718844 + (TG)n Simple_repeat Simple_repeat 1 35 0 752 300 129 16 chr1 224474820 224475092 -57718572 - L1MCc LINE L1 -5074 1349 1032 868 285 35 24 chr1 224475548 224475888 -57717776 - L1MCc LINE L1 -6061 362 19 23 0 0 0 chr1 224476460 224476483 -57717181 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr1 224476882 224476921 -57716743 + AT_rich Low_complexity Low_complexity 1 39 0 1804 183 3 0 chr1 224477960 224478312 -57715352 - AluJo SINE Alu 0 353 1 25 31 0 0 chr1 224478979 224479011 -57714653 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 224479307 224479345 -57714319 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr1 224480493 224480520 -57713144 + AT_rich Low_complexity Low_complexity 1 27 0 959 213 40 10 chr1 224481762 224481964 -57711700 - MER58A DNA MER1_type -16 208 1 573 278 88 79 chr1 224481968 224482451 -57711213 - MLT2E LTR ERVL -93 535 1 28 79 0 0 chr1 224483216 224483279 -57710385 + AT_rich Low_complexity Low_complexity 1 63 0 223 254 18 0 chr1 224483892 224483947 -57709717 + GA-rich Low_complexity Low_complexity 1 56 0 479 295 131 57 chr1 224484412 224484748 -57708916 - L2 LINE L2 -129 3184 2824 1576 206 3 3 chr1 224485044 224485336 -57708328 - AluJo SINE Alu 0 312 21 21 71 0 0 chr1 224485689 224485731 -57707933 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr1 224485983 224486011 -57707653 + AT_rich Low_complexity Low_complexity 1 28 0 947 114 0 0 chr1 224486156 224486296 -57707368 - L1MA2 LINE L1 -1 6303 6164 1841 205 39 5 chr1 224486296 224486704 -57706960 - L1MC1 LINE L1 -6 6327 5904 1878 137 61 17 chr1 224486704 224487063 -57706601 + THE1C LTR MaLR 1 375 0 9208 149 43 7 chr1 224487063 224488588 -57705076 + THE1C-int LTR MaLR 1 1579 -1 1800 139 53 51 chr1 224488589 224488963 -57704701 + THE1C LTR MaLR 1 375 0 2592 213 62 19 chr1 224488965 224489285 -57704379 - L1MC1 LINE L1 -438 5906 5601 2051 146 0 0 chr1 224489285 224489593 -57704071 + AluY SINE Alu 1 308 -3 2592 213 62 19 chr1 224489593 224490232 -57703432 - L1MC1 LINE L1 -743 5601 4900 21 0 0 0 chr1 224491428 224491449 -57702215 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr1 224491762 224491798 -57701866 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 224541976 224541999 -57651665 + AT_rich Low_complexity Low_complexity 1 23 0 194 387 32 32 chr1 224542041 224542165 -57651499 - L2 LINE L2 -58 3214 3091 211 208 0 78 chr1 224542930 224543007 -57650657 + (TCTCTG)n Simple_repeat Simple_repeat 6 76 0 707 287 62 26 chr1 224543069 224543341 -57650323 - MLT1E3 LTR MaLR -1 623 342 * 782 253 6 0 chr1 224543335 224543505 -57650159 - MLT1E3 LTR MaLR -453 171 1 34 79 0 0 chr1 224544486 224544562 -57649102 + AT_rich Low_complexity Low_complexity 1 76 0 24 32 0 0 chr1 224544772 224544803 -57648861 + AT_rich Low_complexity Low_complexity 1 31 0 498 307 117 45 chr1 224545231 224545521 -57648143 - L2 LINE L2 0 3313 3003 11964 181 21 11 chr1 224545533 224548521 -57645143 + L1PA12 LINE L1 1106 4125 -3459 296 321 91 43 chr1 224548524 224548711 -57644953 - L2 LINE L2 -1400 1914 1719 820 247 90 37 chr1 224548714 224549147 -57644517 - MER69 DNA AcHobo -16 2510 2055 920 291 89 6 chr1 224549281 224549752 -57643912 - L1MCc LINE L1 -4460 2662 2153 260 250 38 76 chr1 224549785 224550021 -57643643 - L1MCc LINE L1 -4892 2051 1825 2329 94 3 0 chr1 224550061 224550360 -57643304 + AluSp SINE Alu 3 302 -11 180 0 0 0 chr1 224550360 224550380 -57643284 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 207 0 0 0 chr1 224550379 224550402 -57643262 + (TG)n Simple_repeat Simple_repeat 2 24 0 756 300 129 16 chr1 224550494 224550706 -57642958 - L1MCc LINE L1 -4887 1536 1349 231 61 0 0 chr1 224550706 224550739 -57642925 + (TG)n Simple_repeat Simple_repeat 1 33 0 756 300 129 16 chr1 224550739 224551011 -57642653 - L1MCc LINE L1 -5074 1349 1032 879 289 38 24 chr1 224551467 224551806 -57641858 - L1MCc LINE L1 -6061 362 19 23 0 0 0 chr1 224552378 224552401 -57641263 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr1 224552800 224552839 -57640825 + AT_rich Low_complexity Low_complexity 1 39 0 1475 214 4 0 chr1 224553980 224554261 -57639403 - AluJo SINE Alu -30 282 1 25 31 0 0 chr1 224554928 224554960 -57638704 + AT_rich Low_complexity Low_complexity 1 32 0 24 53 0 0 chr1 224555256 224555294 -57638370 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr1 224556442 224556469 -57637195 + AT_rich Low_complexity Low_complexity 1 27 0 959 213 40 10 chr1 224557711 224557913 -57635751 - MER58A DNA MER1_type -16 208 1 579 279 88 77 chr1 224557917 224558399 -57635265 - MLT2E LTR ERVL -93 535 1 28 79 0 0 chr1 224559165 224559228 -57634436 + AT_rich Low_complexity Low_complexity 1 63 0 223 254 18 0 chr1 224559840 224559895 -57633769 + GA-rich Low_complexity Low_complexity 1 56 0 479 295 131 57 chr1 224560360 224560696 -57632968 - L2 LINE L2 -129 3184 2824 1579 202 3 3 chr1 224560994 224561286 -57632378 - AluJo SINE Alu 0 312 21 21 71 0 0 chr1 224561639 224561681 -57631983 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr1 224561933 224561961 -57631703 + AT_rich Low_complexity Low_complexity 1 28 0 947 114 0 0 chr1 224562106 224562246 -57631418 - L1MA2 LINE L1 -1 6303 6164 1841 205 39 5 chr1 224562246 224562654 -57631010 - L1MC1 LINE L1 -6 6327 5904 1889 134 61 17 chr1 224562654 224563013 -57630651 + THE1C LTR MaLR 1 375 0 9190 150 43 7 chr1 224563013 224564538 -57629126 + THE1C-int LTR MaLR 1 1579 -1 1800 139 53 51 chr1 224564539 224564913 -57628751 + THE1C LTR MaLR 1 375 0 2573 215 62 20 chr1 224564915 224565235 -57628429 - L1MC1 LINE L1 -438 5906 5601 2054 148 0 0 chr1 224565235 224565546 -57628118 + AluY SINE Alu 1 311 0 2573 215 62 20 chr1 224565546 224566186 -57627478 - L1MC1 LINE L1 -743 5601 4900 21 0 0 0 chr1 224567382 224567403 -57626261 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 224567716 224567749 -57625915 + AT_rich Low_complexity Low_complexity 1 33 0 3189 255 17 39 chr1 224572194 224573567 -57620097 + L1 LINE L1 1956 3286 -2860 999 242 39 29 chr1 224573567 224573946 -57619718 + MER52A LTR ERV1 308 1349 -406 * 1507 224 135 64 chr1 224573939 224574515 -57619149 + MER52A LTR ERV1 589 1734 -21 23 0 0 0 chr1 224575412 224575435 -57618229 + AT_rich Low_complexity Low_complexity 1 23 0 1510 202 3 19 chr1 224575686 224575817 -57617847 + AluSx SINE Alu 1 133 -179 405 0 0 0 chr1 224575817 224575862 -57617802 + (TA)n Simple_repeat Simple_repeat 2 46 0 1510 202 3 19 chr1 224575862 224576047 -57617617 + AluSx SINE Alu 133 312 0 23 54 0 0 chr1 224576061 224576098 -57617566 + AT_rich Low_complexity Low_complexity 1 37 0 198 389 96 0 chr1 224576145 224576312 -57617352 - MIR SINE MIR -72 190 8 5315 51 0 0 chr1 224576540 224577191 -57616473 + L1PA5 LINE L1 5498 6148 -6 28 0 0 0 chr1 224577195 224577223 -57616441 + AT_rich Low_complexity Low_complexity 1 28 0 203 189 0 0 chr1 224577372 224577409 -57616255 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 196 315 92 39 chr1 224578117 224578247 -57615417 - MIR SINE MIR -52 210 74 30 27 0 0 chr1 224578448 224578485 -57615179 + AT_rich Low_complexity Low_complexity 1 37 0 2143 105 3 3 chr1 224578838 224579153 -57614511 - AluSp SINE Alu 0 315 1 1752 217 55 61 chr1 224579333 224579822 -57613842 + MER67D LTR ERV1 1 486 -28 26 0 0 0 chr1 224579854 224579880 -57613784 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 224580637 224580658 -57613006 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr1 224580692 224580742 -57612922 + AT_rich Low_complexity Low_complexity 1 50 0 278 280 125 0 chr1 224580937 224581069 -57612595 + L1ME LINE L1 5470 5613 -508 192 97 0 0 chr1 224581109 224581140 -57612524 + (TC)n Simple_repeat Simple_repeat 2 32 0 372 205 18 9 chr1 224581408 224581520 -57612144 + GA-rich Low_complexity Low_complexity 1 113 0 382 215 73 68 chr1 224581885 224582090 -57611574 + L1MC/D LINE L1 5315 5520 -2288 3352 60 44 0 chr1 224582276 224582730 -57610934 - L1PA7 LINE L1 0 6154 5681 22 35 0 0 chr1 224583181 224583210 -57610454 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 224584074 224584096 -57609568 + AT_rich Low_complexity Low_complexity 1 22 0 205 146 42 21 chr1 224584952 224585000 -57608664 + GA-rich Low_complexity Low_complexity 1 49 0 628 294 71 9 chr1 224585510 224585721 -57607943 + MER58A DNA MER1_type 1 224 0 2113 102 3 3 chr1 224585933 224586217 -57607447 - AluSx SINE Alu -1 311 28 910 273 76 37 chr1 224586741 224587180 -57606484 - L1ME3A LINE L1 -36 6134 5680 446 285 23 12 chr1 224587211 224587383 -57606281 - L1ME3A LINE L1 -600 5564 5391 485 307 33 49 chr1 224587415 224587988 -57605676 - L1ME3A LINE L1 -826 5320 4757 232 363 99 19 chr1 224589209 224589421 -57604243 + MIR SINE MIR 25 253 -9 39 84 0 0 chr1 224590078 224590173 -57603491 + AT_rich Low_complexity Low_complexity 1 95 0 22 56 0 0 chr1 224590239 224590275 -57603389 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr1 224591499 224591539 -57602125 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 208 0 0 chr1 224591684 224591732 -57601932 + (CA)n Simple_repeat Simple_repeat 2 49 0 587 283 0 0 chr1 224592296 224592434 -57601230 + MER52A LTR ERV1 1 138 -1617 22 80 0 0 chr1 224592869 224592919 -57600745 + AT_rich Low_complexity Low_complexity 1 50 0 425 309 85 39 chr1 224593536 224593983 -57599681 - L1ME LINE L1 -401 5769 5295 27 62 0 0 chr1 224594070 224594118 -57599546 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr1 224594610 224594634 -57599030 + AT_rich Low_complexity Low_complexity 1 24 0 301 241 109 58 chr1 224594888 224595062 -57598602 - L1M4 LINE L1 -5191 1351 1169 2249 77 3 20 chr1 224596089 224596388 -57597276 - AluY SINE Alu -17 294 1 2016 112 0 58 chr1 224596467 224596779 -57596885 - AluSg SINE Alu -16 294 1 197 83 28 0 chr1 224597563 224597599 -57596065 + (TAA)n Simple_repeat Simple_repeat 1 37 0 595 314 78 5 chr1 224597616 224597807 -57595857 - MIR SINE MIR -40 222 18 1871 163 13 0 chr1 224598521 224598822 -57594842 + AluSx SINE Alu 1 305 -7 602 306 108 21 chr1 224598829 224599392 -57594272 + HAL1 LINE L1 1534 2145 -362 679 227 15 0 chr1 224599519 224599651 -57594013 + AluJo SINE Alu 3 136 -176 245 204 80 26 chr1 224599651 224599764 -57593900 + HAL1 LINE L1 2292 2410 -97 2410 54 0 0 chr1 224600545 224600839 -57592825 + AluY SINE Alu 14 307 -4 22 0 0 0 chr1 224601729 224601751 -57591913 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 224601840 224601863 -57591801 + AT_rich Low_complexity Low_complexity 1 23 0 652 135 60 53 chr1 224601863 224601996 -57591668 - L1MA3 LINE L1 -6 6299 6166 240 383 47 20 chr1 224602096 224602245 -57591419 - L2 LINE L2 -4 3268 3116 233 159 23 0 chr1 224602331 224602375 -57591289 - MLT2F LTR ERVL -140 523 479 5654 258 39 27 chr1 224602404 224603652 -57590012 + ERVL-F LTR ERVL 3147 4418 -1346 1818 155 0 29 chr1 224603652 224603961 -57589703 - AluSx SINE Alu -12 300 1 5654 258 39 27 chr1 224603961 224604222 -57589442 + ERVL-F LTR ERVL 4418 4674 -1090 1800 137 8 101 chr1 224604224 224604589 -57589075 + MER1B DNA MER1_type 1 331 -8 1903 294 63 46 chr1 224604610 224605605 -57588059 + ERVL-F LTR ERVL 4641 5652 -2 396 274 17 17 chr1 224605606 224605723 -57587941 + MLT2F LTR ERVL 1 117 -546 698 219 17 56 chr1 224605742 224605920 -57587744 + MLT1E3 LTR MaLR 51 221 -403 23 33 0 0 chr1 224606057 224606087 -57587577 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr1 224606100 224606135 -57587529 + AT_rich Low_complexity Low_complexity 1 35 0 350 327 59 4 chr1 224606325 224606454 -57587210 + MIR SINE MIR 22 153 -74 433 290 76 61 chr1 224606466 224606698 -57586966 + MLT1H LTR MaLR 13 291 -258 3635 144 30 13 chr1 224606760 224607437 -57586227 - L1MA5 LINE L1 -380 5911 5224 503 225 37 42 chr1 224607433 224607624 -57586040 + L1MA5 LINE L1 5925 6114 -186 * 751 237 0 11 chr1 224607671 224607861 -57585803 + L1MB8 LINE L1 5991 6178 0 372 316 36 0 chr1 224607901 224608040 -57585624 + MLT1H LTR MaLR 405 548 -1 2671 127 13 2 chr1 224608040 224608489 -57585175 + L1MA2 LINE L1 5851 6304 0 22 0 0 0 chr1 224608525 224608547 -57585117 + AT_rich Low_complexity Low_complexity 1 22 0 44 20 0 0 chr1 224608713 224608764 -57584900 + AT_rich Low_complexity Low_complexity 1 51 0 253 352 113 0 chr1 224608787 224608929 -57584735 - MIR SINE MIR -73 189 32 22 35 0 0 chr1 224610168 224610197 -57583467 + AT_rich Low_complexity Low_complexity 1 29 0 372 211 14 0 chr1 224610637 224610708 -57582956 + Tigger5 DNA MER2_type 2251 2322 -1 2692 215 84 30 chr1 224611096 224611924 -57581740 - L1MC2 LINE L1 -9 6335 5463 25 75 0 0 chr1 224611935 224611988 -57581676 + AT_rich Low_complexity Low_complexity 1 53 0 447 376 49 4 chr1 224612030 224612256 -57581408 + MIR SINE MIR 6 241 -21 25 31 0 0 chr1 224612345 224612377 -57581287 + AT_rich Low_complexity Low_complexity 1 32 0 232 158 35 0 chr1 224612413 224612470 -57581194 + (TA)n Simple_repeat Simple_repeat 2 60 0 195 42 0 0 chr1 224612470 224612494 -57581170 + (GA)n Simple_repeat Simple_repeat 2 25 0 335 261 118 13 chr1 224612502 224612655 -57581009 - L2 LINE L2 -690 2624 2456 253 159 175 16 chr1 224612665 224612728 -57580936 - AluSp SINE Alu -112 191 119 1543 111 0 9 chr1 224612979 224613196 -57580468 + AluY SINE Alu 42 256 -55 1584 195 36 23 chr1 224613303 224613688 -57579976 - MLT1B LTR MaLR 0 390 1 235 292 56 49 chr1 224617540 224617684 -57575980 + MIR SINE MIR 48 192 -70 2383 68 0 3 chr1 224618377 224618688 -57574976 + AluY SINE Alu 1 310 -1 860 332 27 3 chr1 224619017 224619348 -57574316 + L1MEc LINE L1 292 630 -5766 380 20 0 20 chr1 224619468 224619518 -57574146 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 1403 194 14 11 chr1 224619522 224619800 -57573864 - AluJo SINE Alu -32 280 2 22 0 0 0 chr1 224620209 224620231 -57573433 + AT_rich Low_complexity Low_complexity 1 22 0 504 276 77 11 chr1 224620321 224620502 -57573162 + MIR SINE MIR 26 218 -44 24 67 0 0 chr1 224620507 224620552 -57573112 + AT_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr1 224620662 224620686 -57572978 + (TG)n Simple_repeat Simple_repeat 2 25 0 246 200 0 0 chr1 224621937 224621982 -57571682 + MER34 LTR ERV1 7 51 -491 382 262 84 65 chr1 224622008 224622222 -57571442 + MER39 LTR ERV1 306 523 -184 4322 190 11 2 chr1 224622225 224623019 -57570645 - MER6 DNA MER2_type 0 865 65 1533 248 59 9 chr1 224623570 224624207 -57569457 - L1M LINE L1 -743 5403 4763 24 0 0 0 chr1 224624487 224624511 -57569153 + AT_rich Low_complexity Low_complexity 1 24 0 693 274 111 22 chr1 224624675 224625046 -57568618 + LTR40c LTR ERVL 3 396 -66 21 0 0 0 chr1 224625413 224625434 -57568230 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 224625877 224625916 -57567748 + AT_rich Low_complexity Low_complexity 1 39 0 210 270 61 35 chr1 224626409 224626524 -57567140 - MIR SINE MIR 0 262 145 22 0 0 0 chr1 224627495 224627517 -57566147 + AT_rich Low_complexity Low_complexity 1 22 0 2196 210 32 4 chr1 224628173 224628639 -57565025 - LTR42 LTR ERVL -16 479 1 354 254 23 77 chr1 224628806 224628936 -57564728 - MIR SINE MIR -71 191 69 21 0 0 0 chr1 224629754 224629775 -57563889 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr1 224630178 224630208 -57563456 + (A)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr1 224630543 224630578 -57563086 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr1 224631051 224631102 -57562562 + AT_rich Low_complexity Low_complexity 1 51 0 612 299 83 8 chr1 224631916 224632170 -57561494 - MER20B DNA MER1_type -420 363 91 22 0 0 0 chr1 224633446 224633468 -57560196 + AT_rich Low_complexity Low_complexity 1 22 0 358 295 19 19 chr1 224633964 224634121 -57559543 + MIR SINE MIR 18 172 -36 431 265 0 90 chr1 224634149 224634315 -57559349 + MER82 DNA MER2_type 310 460 -193 244 271 59 34 chr1 224634409 224634527 -57559137 - L1M4 LINE L1 -2280 3866 3746 472 195 315 0 chr1 224634534 224634683 -57558981 - MER58 DNA MER1_type -2224 196 1 206 353 0 15 chr1 224634697 224634765 -57558899 + MER5A DNA MER1_type 45 121 -67 4587 166 28 45 chr1 224634778 224635755 -57557909 - L1MD3 LINE L1 -19 8256 5635 563 243 201 59 chr1 224635770 224636006 -57557658 - HAL1 LINE L1 0 2507 2306 369 0 0 0 chr1 224636006 224636047 -57557617 + (CA)n Simple_repeat Simple_repeat 2 42 0 563 243 201 59 chr1 224636047 224636332 -57557332 - HAL1 LINE L1 -201 2306 1912 8013 269 61 24 chr1 224636976 224640824 -57552840 - L1MD3 LINE L1 -875 5551 1441 347 56 19 0 chr1 224640824 224640878 -57552786 + (TG)n Simple_repeat Simple_repeat 2 56 0 8013 269 61 24 chr1 224640878 224641028 -57552636 - L1MD3 LINE L1 -4985 1441 1298 3288 124 9 9 chr1 224641037 224641571 -57552093 - L1MA1 LINE L1 0 7721 7188 665 241 241 5 chr1 224641571 224641774 -57551890 - AluSx SINE Alu -23 289 39 9995 191 25 12 chr1 224641774 224643312 -57550352 - L1MA1 LINE L1 -517 7204 5610 813 11 0 0 chr1 224643312 224643404 -57550260 - L1PA5 LINE L1 -9 6145 6054 9995 191 25 12 chr1 224643404 224644573 -57549091 - L1MA1 LINE L1 -2111 5610 4458 6779 219 39 11 chr1 224644606 224644776 -57548888 - L1MA1 LINE L1 -6064 1501 1337 1788 140 53 63 chr1 224644776 224645155 -57548509 + THE1C LTR MaLR 1 375 0 6779 219 39 11 chr1 224645155 224646431 -57547233 - L1MA1 LINE L1 -6228 1337 15 372 161 118 0 chr1 224646433 224646473 -57547191 - L1MD3 LINE L1 -5182 1244 1210 180 77 0 0 chr1 224646473 224646499 -57547165 + (TG)n Simple_repeat Simple_repeat 2 27 0 372 161 118 0 chr1 224646499 224646551 -57547113 - L1MD3 LINE L1 -5216 1210 1141 3635 196 76 59 chr1 224646566 224647156 -57546508 - L1MD3 LINE L1 -5507 919 308 1828 150 17 3 chr1 224647156 224647450 -57546214 - AluSx SINE Alu -14 298 1 3635 196 76 59 chr1 224647450 224647743 -57545921 - L1MD3 LINE L1 -6118 308 21 494 280 16 6 chr1 224647757 224647939 -57545725 - L1MCa LINE L1 -2391 4035 3852 * 7382 98 11 2 chr1 224647934 224649031 -57544633 - L1P LINE L1 -2147 3999 2893 1735 291 94 44 chr1 224649026 224650206 -57543458 - L1MDa LINE L1 -5090 1450 17 * 737 229 217 6 chr1 224650207 224650627 -57543037 - L1MCa LINE L1 -3950 2476 2057 27 0 0 0 chr1 224652054 224652081 -57541583 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chr1 224652415 224652458 -57541206 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr1 224652630 224652655 -57541009 + AT_rich Low_complexity Low_complexity 1 25 0 2340 58 7 23 chr1 224653794 224654103 -57539561 + AluY SINE Alu 3 306 -5 21 36 0 0 chr1 224656481 224656509 -57537155 + AT_rich Low_complexity Low_complexity 1 28 0 186 133 0 0 chr1 224656865 224656895 -57536769 + (A)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr1 224657266 224657292 -57536372 + (T)n Simple_repeat Simple_repeat 1 26 0 319 202 131 24 chr1 224658158 224658242 -57535422 - MLT1B LTR MaLR -297 93 1 1394 178 66 54 chr1 224658456 224658788 -57534876 + MER44D DNA MER2_type 1 606 -3 550 270 6 0 chr1 224658797 224658960 -57534704 - L1MEc LINE L1 -3699 2516 2353 1737 251 45 4 chr1 224661268 224661818 -57531846 - L1PA16 LINE L1 -3227 2919 2347 8709 222 24 13 chr1 224661826 224663245 -57530419 + L1PA16 LINE L1 2937 4338 -1828 1851 128 4 0 chr1 224663245 224663503 -57530161 + AluSp SINE Alu 1 259 -54 8709 222 24 13 chr1 224663503 224665259 -57528405 + L1PA16 LINE L1 4338 6154 -12 224 59 29 0 chr1 224665260 224665294 -57528370 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 292 319 131 31 chr1 224665424 224665653 -57528011 - L1ME LINE L1 -419 5751 5500 1887 127 0 28 chr1 224665696 224666027 -57527637 - AluSx SINE Alu 0 323 1 10891 30 0 0 chr1 224666053 224668119 -57525545 - L1PA4 LINE L1 0 6155 4089 208 250 33 0 chr1 224668453 224668513 -57525151 + (TG)n Simple_repeat Simple_repeat 2 63 0 32 43 0 0 chr1 224668638 224668684 -57524980 + AT_rich Low_complexity Low_complexity 1 46 0 338 222 79 8 chr1 224668737 224668863 -57524801 - L1MEc LINE L1 -4677 1719 1585 674 329 71 44 chr1 224668867 224669630 -57524034 + L2 LINE L2 2527 3313 0 2471 165 2 2 chr1 224670460 224670879 -57522785 + L1PA16 LINE L1 5744 6162 -4 227 226 155 24 chr1 224671024 224671108 -57522556 + MLT1E LTR MaLR 69 163 -430 1457 256 23 31 chr1 224671228 224671618 -57522046 + MLT1E LTR MaLR 207 593 0 249 288 112 24 chr1 224671941 224672066 -57521598 - L2 LINE L2 0 3272 3137 480 286 181 5 chr1 224672187 224672386 -57521278 - MIR SINE MIR -17 245 12 232 217 29 29 chr1 224673064 224673133 -57520531 - L1MEc LINE L1 -5981 224 156 26 64 0 0 chr1 224673498 224673545 -57520119 + AT_rich Low_complexity Low_complexity 1 47 0 365 350 63 36 chr1 224673784 224674087 -57519577 - L1M4 LINE L1 -1155 4991 4681 29 60 0 0 chr1 224676255 224676305 -57517359 + AT_rich Low_complexity Low_complexity 1 50 0 239 374 88 6 chr1 224676328 224676510 -57517154 - MIR SINE MIR -64 198 2 307 241 133 0 chr1 224676568 224676651 -57517013 + L1MC4 LINE L1 6599 6692 -1350 2123 68 8 0 chr1 224676798 224677063 -57516601 + AluY SINE Alu 34 300 -11 455 313 209 32 chr1 224677347 224678025 -57515639 + L2 LINE L2 1917 2714 -600 21 0 0 0 chr1 224678071 224678092 -57515572 + AT_rich Low_complexity Low_complexity 1 21 0 203 403 20 55 chr1 224678113 224678314 -57515350 + L2 LINE L2 2759 2952 -362 260 284 11 32 chr1 224678421 224678516 -57515148 + CT-rich Low_complexity Low_complexity 2 94 0 538 218 10 47 chr1 224679442 224679635 -57514029 + MER53 DNA DNA 3 188 -1 2110 122 0 13 chr1 224679885 224680188 -57513476 - AluSq SINE Alu -14 299 1 423 253 0 0 chr1 224680833 224680924 -57512740 - MER58A DNA MER1_type 0 136 46 845 264 37 68 chr1 224681984 224682393 -57511271 - MSTD LTR MaLR 0 396 1 1954 116 3 11 chr1 224682599 224682883 -57510781 + AluSx SINE Alu 1 282 -30 22 35 0 0 chr1 224683341 224683370 -57510294 + AT_rich Low_complexity Low_complexity 1 29 0 1085 93 0 0 chr1 224684021 224684161 -57509503 - AluSc SINE Alu -15 294 155 1075 228 64 56 chr1 224684226 224684608 -57509056 + MER67C LTR ERV1 1 403 -253 225 154 0 0 chr1 224685098 224685137 -57508527 + (CA)n Simple_repeat Simple_repeat 2 40 0 3516 118 34 2 chr1 224685306 224685841 -57507823 - MER41A LTR ERV1 0 554 3 2760 250 48 34 chr1 224686533 224688032 -57505632 - L1M4 LINE L1 -3850 2794 1181 1503 159 76 10 chr1 224688032 224688322 -57505342 + AluJb SINE Alu 1 309 -3 2760 250 48 34 chr1 224688322 224688465 -57505199 - L1M4 LINE L1 -5463 1181 1042 12480 162 45 48 chr1 224688471 224691008 -57502656 - Tigger4(Zombi) DNA MER2_type 0 2731 205 1202 296 90 51 chr1 224691068 224691965 -57501699 - L1M4 LINE L1 -5516 1026 95 857 210 24 0 chr1 224691984 224692151 -57501513 - FAM SINE Alu -4 171 1 28 48 0 0 chr1 224692313 224692355 -57501309 + AT_rich Low_complexity Low_complexity 1 42 0 1021 170 46 8 chr1 224692602 224692840 -57500824 - L1M2 LINE L1 -653 5659 5353 524 270 27 0 chr1 224692837 224692985 -57500679 + L1M2 LINE L1 5637 5788 -524 * 310 174 16 58 chr1 224692999 224693120 -57500544 + (TATAA)n Simple_repeat Simple_repeat 1 116 0 1783 236 70 20 chr1 224693198 224693744 -57499920 + L1MA9 LINE L1 5702 6274 -38 23 33 0 0 chr1 224694035 224694065 -57499599 + AT_rich Low_complexity Low_complexity 1 30 0 447 113 0 0 chr1 224694149 224694220 -57499444 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 1228 217 23 80 chr1 224694787 224695174 -57498490 - MLT1A1 LTR MaLR 0 365 1 1964 185 40 74 chr1 224696261 224696804 -57496860 + MER41B LTR ERV1 100 469 -9 37 62 0 0 chr1 224697432 224697497 -57496167 + AT_rich Low_complexity Low_complexity 1 65 0 218 222 0 0 chr1 224697690 224697735 -57495929 + A-rich Low_complexity Low_complexity 1 45 0 3454 266 79 31 chr1 224698314 224700339 -57493325 + L1MC/D LINE L1 3135 5304 -1055 1981 197 13 0 chr1 224700339 224700724 -57492940 - MLT1B LTR MaLR 0 390 1 3454 266 79 31 chr1 224700724 224701062 -57492602 + L1MC/D LINE L1 5304 5624 -735 1650 315 104 29 chr1 224701426 224701856 -57491808 + L2 LINE L2 1025 1421 -1893 1281 197 126 41 chr1 224701856 224702221 -57491443 - MSTD LTR MaLR 0 396 1 1650 315 104 29 chr1 224702221 224702754 -57490910 + L2 LINE L2 1421 2060 -1254 574 299 231 16 chr1 224702912 224703220 -57490444 + L2 LINE L2 2079 2452 -862 23 33 0 0 chr1 224703863 224703893 -57489771 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 224704856 224704878 -57488786 + AT_rich Low_complexity Low_complexity 1 22 0 223 298 128 35 chr1 224705603 224705744 -57487920 + L2 LINE L2 2419 2572 -742 2234 262 28 44 chr1 224707470 224708150 -57485514 + L1MCa LINE L1 144 812 -5752 2037 114 0 13 chr1 224708187 224708515 -57485149 + AluSc SINE Alu 1 309 0 247 313 0 0 chr1 224708542 224708622 -57485042 + L1MCa LINE L1 739 818 -5227 13348 173 25 34 chr1 224708630 224713540 -57480124 + L1MA3 LINE L1 2835 7724 0 216 97 0 0 chr1 224713837 224713868 -57479796 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 243 27 14 chr1 224714005 224714079 -57479585 + MER20 DNA MER1_type 129 203 -16 23 0 0 0 chr1 224714650 224714673 -57478991 + AT_rich Low_complexity Low_complexity 1 23 0 1728 136 68 7 chr1 224714673 224714968 -57478696 + AluSp SINE Alu 1 313 0 602 253 47 12 chr1 224715210 224715380 -57478284 + FRAM SINE Alu 1 176 0 396 0 0 0 chr1 224715404 224715448 -57478216 + (CA)n Simple_repeat Simple_repeat 2 45 0 2283 99 0 0 chr1 224715636 224715938 -57477726 + AluSx SINE Alu 1 302 -10 241 323 63 8 chr1 224717008 224717135 -57476529 - MIR SINE MIR -80 182 49 305 283 59 73 chr1 224717636 224717855 -57475809 + MIR SINE MIR 47 262 0 320 333 51 17 chr1 224718193 224718487 -57475177 - L1MEc LINE L1 -4390 2006 1703 8430 181 21 39 chr1 224718555 224720339 -57473325 - L1P LINE L1 -1777 4369 2618 2093 113 3 7 chr1 224720339 224720639 -57473025 - AluSq SINE Alu -11 302 4 8430 181 21 39 chr1 224720639 224720747 -57472917 - L1P LINE L1 -3528 2618 2510 2483 149 66 5 chr1 224720756 224721564 -57472100 + L1P4 LINE L1 4873 5720 -441 1240 278 78 16 chr1 224721722 224722093 -57471571 + MLT1E2 LTR MaLR 215 608 -18 182 395 0 0 chr1 224723231 224723307 -57470357 + L2 LINE L2 2278 2353 -961 22 56 0 0 chr1 224723438 224723474 -57470190 + AT_rich Low_complexity Low_complexity 1 36 0 1523 211 4 0 chr1 224723593 224723868 -57469796 - AluJo SINE Alu -34 278 3 23 0 0 0 chr1 224723875 224723898 -57469766 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 224725165 224725189 -57468475 + AT_rich Low_complexity Low_complexity 1 24 0 213 94 0 0 chr1 224725868 224725900 -57467764 + (CA)n Simple_repeat Simple_repeat 1 32 0 25 90 0 0 chr1 224726354 224726421 -57467243 + AT_rich Low_complexity Low_complexity 1 67 0 276 306 8 8 chr1 224726750 224726874 -57466790 + (TA)n Simple_repeat Simple_repeat 1 124 0 288 359 77 62 chr1 224727066 224727548 -57466116 + L2 LINE L2 25 513 -2801 213 288 0 0 chr1 224727986 224728045 -57465619 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 2025 166 39 38 chr1 224729138 224729688 -57463976 - MLT2A2 LTR ERVL 0 554 1 2106 104 3 0 chr1 224729823 224730110 -57463554 + AluSx SINE Alu 1 288 -24 300 53 0 0 chr1 224730139 224730177 -57463487 + (GA)n Simple_repeat Simple_repeat 1 38 0 359 344 16 0 chr1 224730363 224730485 -57463179 + MIR SINE MIR 9 132 -130 705 340 93 0 chr1 224730928 224731267 -57462397 - L2 LINE L2 -303 3010 2642 295 214 57 0 chr1 224731307 224731377 -57462287 - MER94 DNA DNA -59 75 2 180 287 85 21 chr1 224731377 224731471 -57462193 - L2 LINE L2 -657 2657 2558 186 133 0 0 chr1 224731645 224731675 -57461989 + (CATA)n Simple_repeat Simple_repeat 2 31 0 31 99 0 0 chr1 224731732 224731833 -57461831 + AT_rich Low_complexity Low_complexity 1 101 0 457 280 115 72 chr1 224732613 224733056 -57460608 + L2 LINE L2 2084 2545 -769 244 402 62 48 chr1 224733340 224733778 -57459886 + L2 LINE L2 2825 3268 -4 21 36 0 0 chr1 224734902 224734930 -57458734 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 224736016 224736037 -57457627 + AT_rich Low_complexity Low_complexity 1 21 0 1454 125 40 94 chr1 224737153 224737504 -57456160 - L1MA7 LINE L1 0 6291 5960 21 36 0 0 chr1 224737754 224737782 -57455882 + AT_rich Low_complexity Low_complexity 1 28 0 1346 231 93 101 chr1 224738301 224738939 -57454725 - LTR19C LTR ERV1 -2 777 145 1952 90 0 4 chr1 224738939 224739195 -57454469 + AluSx SINE Alu 38 292 -20 1346 231 93 101 chr1 224739195 224739326 -57454338 - LTR19C LTR ERV1 -634 145 14 26 30 0 0 chr1 224740274 224740307 -57453357 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr1 224741387 224741428 -57452236 + AT_rich Low_complexity Low_complexity 1 41 0 595 282 100 51 chr1 224741511 224742043 -57451621 + L1M4 LINE L1 2898 3455 -2691 226 309 15 0 chr1 224742292 224742360 -57451304 - L2 LINE L2 -623 2691 2623 1229 220 35 7 chr1 224743818 224744100 -57449564 + MER6 DNA MER2_type 65 354 -511 24 77 0 0 chr1 224744647 224744699 -57448965 + AT_rich Low_complexity Low_complexity 1 52 0 1969 177 16 3 chr1 224745102 224745489 -57448175 - L1PA16 LINE L1 -1322 4824 4433 1837 211 37 2 chr1 224745489 224745925 -57447739 + L1PA16 LINE L1 4845 5295 -851 312 91 0 0 chr1 224746127 224746171 -57447493 + (T)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr1 224746527 224746555 -57447109 + AT_rich Low_complexity Low_complexity 1 28 0 1270 232 7 3 chr1 224746758 224747061 -57446603 + L1PA16 LINE L1 5831 6151 -4 3300 181 14 66 chr1 224747220 224747942 -57445722 - L1MA8 LINE L1 -25 6266 5586 2235 115 3 0 chr1 224747942 224748247 -57445417 - AluSq SINE Alu -5 308 3 3300 181 14 66 chr1 224748247 224748362 -57445302 - L1MA8 LINE L1 -705 5586 5467 31 26 0 0 chr1 224749271 224749309 -57444355 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr1 224750240 224750263 -57443401 + (GA)n Simple_repeat Simple_repeat 2 24 0 2207 102 7 0 chr1 224750416 224750709 -57442955 + AluSg SINE Alu 2 296 -14 234 0 0 0 chr1 224750773 224750799 -57442865 + (CA)n Simple_repeat Simple_repeat 1 26 0 473 127 13 0 chr1 224752028 224752107 -57441557 - MADE1 DNA Mariner 0 80 1 422 283 161 6 chr1 224753427 224753607 -57440057 + L2 LINE L2 3091 3298 -15 31 58 0 0 chr1 224753943 224753995 -57439669 + AT_rich Low_complexity Low_complexity 1 52 0 315 322 155 15 chr1 224754799 224755063 -57438601 + L2 LINE L2 3003 3303 -10 1924 118 0 0 chr1 224755063 224755334 -57438330 + AluSg SINE Alu 1 271 -39 306 50 0 0 chr1 224755334 224755374 -57438290 + (TC)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr1 224755374 224755399 -57438265 + AT_rich Low_complexity Low_complexity 1 25 0 231 191 105 124 chr1 224755479 224755584 -57438080 - MLT1G1 LTR MaLR -6 589 487 291 308 15 31 chr1 224755800 224755930 -57437734 - MLT1H LTR MaLR -392 157 30 434 345 50 31 chr1 224756486 224756747 -57436917 + L2 LINE L2 2456 2721 -593 306 226 86 0 chr1 224756752 224756845 -57436819 + L1ME1 LINE L1 6059 6159 -7 199 304 22 43 chr1 224756852 224756944 -57436720 + L2 LINE L2 2699 2788 -526 239 310 142 69 chr1 224757001 224757262 -57436402 + L2 LINE L2 3033 3312 -1 330 26 0 0 chr1 224758112 224758151 -57435513 + (TG)n Simple_repeat Simple_repeat 2 40 0 194 57 57 0 chr1 224758344 224758379 -57435285 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 4206 52 6 4 chr1 224758380 224758921 -57434743 - L1PA8 LINE L1 -8 6164 5623 22 0 0 0 chr1 224759299 224759321 -57434343 + AT_rich Low_complexity Low_complexity 1 22 0 1675 175 54 18 chr1 224759804 224760135 -57433529 + MER61A LTR ERV1 1 343 0 264 100 0 0 chr1 224760542 224760582 -57433082 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 7128 32 1 1 chr1 224760767 224761617 -57432047 - L1PA3 LINE L1 0 6155 5306 * 7745 25 1 0 chr1 224761616 224762545 -57431119 + L1P LINE L1 4385 5316 -844 252 0 0 0 chr1 224763080 224763108 -57430556 + (TG)n Simple_repeat Simple_repeat 2 29 0 2058 133 3 9 chr1 224763404 224763719 -57429945 - AluSp SINE Alu 0 313 1 1414 156 7 42 chr1 224763836 224764124 -57429540 + L1PA16 LINE L1 5887 6164 -2 195 42 0 0 chr1 224764337 224764361 -57429303 + (TG)n Simple_repeat Simple_repeat 1 24 0 319 270 87 5 chr1 224764572 224764738 -57428926 - L1ME LINE L1 -671 5480 5306 1989 133 10 0 chr1 224764996 224765296 -57428368 - AluSc SINE Alu -6 303 1 200 262 267 19 chr1 224765652 224765858 -57427806 - L2 LINE L2 -2519 795 539 229 232 11 53 chr1 224766465 224766560 -57427104 + L1MC4 LINE L1 6613 6703 -1339 278 259 9 27 chr1 224766561 224766673 -57426991 + (TA)n Simple_repeat Simple_repeat 1 110 0 2166 113 0 16 chr1 224766719 224767030 -57426634 - AluSc SINE Alu -3 306 1 253 199 54 48 chr1 224767126 224767292 -57426372 + (TTATA)n Simple_repeat Simple_repeat 1 167 0 1344 224 17 7 chr1 224767330 224767620 -57426044 + AluJo SINE Alu 1 293 -19 25 0 0 0 chr1 224768843 224768868 -57424796 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 224768939 224768974 -57424690 + AT_rich Low_complexity Low_complexity 1 35 0 438 346 123 0 chr1 224769125 224769336 -57424328 - MIR SINE MIR -24 238 2 21 57 0 0 chr1 224769909 224769944 -57423720 + AT_rich Low_complexity Low_complexity 1 35 0 2177 186 31 19 chr1 224770141 224770620 -57423044 - L1 LINE L1 -1455 4691 4207 21 36 0 0 chr1 224771568 224771596 -57422068 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr1 224771987 224772025 -57421639 + AT_rich Low_complexity Low_complexity 1 38 0 1524 266 53 19 chr1 224772622 224773186 -57420478 - HsTC2c DNA Tc2 -4 725 143 26 50 0 0 chr1 224773368 224773408 -57420256 + AT_rich Low_complexity Low_complexity 1 40 0 1759 127 16 0 chr1 224773411 224773663 -57420001 + AluSc SINE Alu 39 294 -15 869 288 105 12 chr1 224774294 224774617 -57419047 + L1M4b LINE L1 11 363 -6496 * 1490 173 4 218 chr1 224774606 224775001 -57418663 + L1M1 LINE L1 142 620 -6945 1281 49 0 27 chr1 224775001 224775186 -57418478 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1531 208 14 0 chr1 224775191 224775479 -57418185 - AluSx SINE Alu -20 292 1 1490 173 4 218 chr1 224775479 224775587 -57418077 + L1M1 LINE L1 413 542 -7023 548 192 171 20 chr1 224775607 224775753 -57417911 + L1M1 LINE L1 1638 1805 -5760 293 152 30 0 chr1 224775782 224775848 -57417816 + GA-rich Low_complexity Low_complexity 4 71 0 2850 149 149 4 chr1 224775848 224776397 -57417267 + L1M1 LINE L1 1757 2385 -5180 1336 76 0 0 chr1 224776397 224776569 -57417095 - LTR12 LTR ERV1 -420 294 123 264 250 0 0 chr1 224776573 224776625 -57417039 - LTR30 LTR ERV1 -670 52 1 4173 113 36 2 chr1 224776635 224777247 -57416417 - HERV9 LTR ERV1 -10 8389 7757 1946 171 66 44 chr1 224777242 224778009 -57415655 - HERV17 LTR ERV1 -5176 1720 919 * 6219 97 9 7 chr1 224777985 224778858 -57414806 - HERV17 LTR ERV1 -3445 4954 4080 7773 94 4 5 chr1 224778865 224779940 -57413724 - HERV17 LTR ERV1 -5260 3139 2066 1749 198 118 5 chr1 224780823 224781237 -57412427 - LOR1b LTR ERV1 0 461 1 375 248 2 6 chr1 224781623 224781722 -57411942 + L1MC/D LINE L1 5697 5793 -390 247 315 22 0 chr1 224781718 224781807 -57411857 + L1MC4 LINE L1 6615 6705 -1337 * 255 286 0 22 chr1 224781821 224781912 -57411752 + L1MC4 LINE L1 6614 6702 -1340 272 134 104 30 chr1 224781921 224781988 -57411676 + L1MD1 LINE L1 5780 5851 -315 1301 199 57 83 chr1 224782029 224782452 -57411212 + L1MD1 LINE L1 5831 6242 0 1461 179 53 53 chr1 224782535 224782910 -57410754 + THE1C LTR MaLR 1 375 0 9323 142 6 35 chr1 224782912 224784537 -57409127 + THE1C-int LTR MaLR 3 1580 0 1008 176 59 31 chr1 224784537 224784847 -57408817 + THE1C LTR MaLR 1 372 -3 34 0 0 0 chr1 224786367 224786401 -57407263 + AT_rich Low_complexity Low_complexity 1 34 0 35 71 0 0 chr1 224787803 224787873 -57405791 + AT_rich Low_complexity Low_complexity 1 70 0 337 189 67 0 chr1 224787873 224787963 -57405701 - L1MA5A LINE L1 -2 6295 6200 6132 164 35 18 chr1 224787963 224788892 -57404772 - L1MA5A LINE L1 -42 6255 5344 2343 83 0 3 chr1 224788892 224789194 -57404470 + AluY SINE Alu 1 301 -10 6132 164 35 18 chr1 224789194 224790240 -57403424 - L1MA5A LINE L1 -953 5344 4216 1261 56 0 0 chr1 224790240 224790400 -57403264 - L1PA7 LINE L1 0 6154 5995 6132 164 35 18 chr1 224790400 224790611 -57403053 - L1MA5A LINE L1 -2081 4216 4010 1682 174 3 0 chr1 224791410 224791719 -57401945 - AluSx SINE Alu 0 310 1 206 338 14 0 chr1 224791845 224791916 -57401748 + L2 LINE L2 3201 3272 0 234 413 25 0 chr1 224791955 224792076 -57401588 + L2 LINE L2 2527 2650 -664 403 287 39 65 chr1 224792117 224792396 -57401268 - L1ME1 LINE L1 -5 6161 5890 849 330 50 11 chr1 224792502 224792881 -57400783 - L1MEc LINE L1 -5967 429 36 799 226 0 0 chr1 224792898 224793057 -57400607 + AluJb SINE Alu 130 288 -24 190 291 76 13 chr1 224793171 224793250 -57400414 + L2 LINE L2 2824 2907 -365 408 286 74 77 chr1 224794210 224794370 -57399294 + L1MEc LINE L1 1587 1746 -4975 1706 186 6 3 chr1 224794370 224794681 -57398983 + AluSx SINE Alu 1 312 0 408 286 74 77 chr1 224794681 224795234 -57398430 + L1MEc LINE L1 1746 2361 -4360 232 299 72 23 chr1 224795291 224795555 -57398109 + L1MEc LINE L1 2458 2734 -3987 217 339 54 0 chr1 224795619 224795760 -57397904 + L2 LINE L2 3147 3298 -15 8091 116 21 57 chr1 224796462 224797790 -57395874 - HSMAR1 DNA Mariner -6 1281 1 418 272 117 17 chr1 224797923 224798103 -57395561 + HERV16 LTR ERVL 687 884 -4112 2024 336 56 11 chr1 224798821 224799791 -57393873 + HERV16 LTR ERVL 1721 2733 -2263 193 329 24 24 chr1 224799824 224799906 -57393758 - L2 LINE L2 -534 2780 2699 374 173 27 18 chr1 224799974 224800084 -57393580 + GA-rich Low_complexity Low_complexity 4 114 0 218 156 22 0 chr1 224800475 224800520 -57393144 + (CA)n Simple_repeat Simple_repeat 2 47 0 208 200 22 0 chr1 224800524 224800569 -57393095 + (TA)n Simple_repeat Simple_repeat 1 46 0 291 295 78 30 chr1 224801080 224801246 -57392418 - MIR SINE MIR -17 245 72 2356 61 7 3 chr1 224801502 224801798 -57391866 - AluY SINE Alu -14 297 1 23 54 0 0 chr1 224804585 224804622 -57389042 + AT_rich Low_complexity Low_complexity 1 37 0 32 26 0 0 chr1 224804797 224804836 -57388828 + AT_rich Low_complexity Low_complexity 1 39 0 1958 101 18 22 chr1 224806978 224807304 -57386360 - AluSx SINE Alu 0 312 23 3143 168 7 0 chr1 224807521 224808080 -57385584 + L1PA16 LINE L1 5595 6157 -9 1161 260 36 18 chr1 224808222 224808553 -57385111 + L1ME1 LINE L1 5802 6138 -28 243 61 0 0 chr1 224809975 224810008 -57383656 + (CA)n Simple_repeat Simple_repeat 2 34 0 1421 245 39 11 chr1 224812303 224812658 -57381006 - MLT1A1 LTR MaLR 0 365 1 1790 328 53 19 chr1 224812880 224813754 -57379910 - L2 LINE L2 -274 3039 2143 1174 317 123 22 chr1 224813907 224814510 -57379154 - L2 LINE L2 -1683 1631 968 625 138 0 94 chr1 224814510 224814648 -57379016 - Tigger2a DNA MER2_type -309 125 1 2272 111 3 0 chr1 224814702 224815009 -57378655 - AluSx SINE Alu -3 309 2 261 254 69 0 chr1 224815033 224815163 -57378501 + MER20B DNA MER1_type 573 711 -72 304 290 40 8 chr1 224815398 224815522 -57378142 - LTR33 LTR ERVL -17 504 377 635 318 106 45 chr1 224815559 224815646 -57378018 - MLT1H1 LTR MaLR -155 400 320 1557 226 50 29 chr1 224815646 224816101 -57377563 - MLT1C LTR MaLR -2 465 1 635 318 106 45 chr1 224816101 224816390 -57377274 - MLT1H1 LTR MaLR -235 320 1 318 341 65 31 chr1 224816404 224816694 -57376970 - HERVL LTR ERVL -517 5247 4948 2019 157 0 0 chr1 224816729 224817035 -57376629 + AluSx SINE Alu 3 308 -4 1961 169 61 12 chr1 224817049 224817683 -57375981 - L1P5 LINE L1 -653 5503 4844 871 157 3 2 chr1 224817681 224817836 -57375828 + L1M4 LINE L1 5526 5681 -492 * 305 299 95 44 chr1 224817855 224818129 -57375535 - HERVL LTR ERVL -3784 1870 1583 1864 122 0 28 chr1 224818820 224819107 -57374557 + AluSp SINE Alu 1 279 -34 21 0 0 0 chr1 224820209 224820230 -57373434 + AT_rich Low_complexity Low_complexity 1 21 0 309 169 14 14 chr1 224820360 224820431 -57373233 + L1MA3 LINE L1 6234 6304 -1 34 24 0 0 chr1 224820431 224820472 -57373192 + AT_rich Low_complexity Low_complexity 1 41 0 1819 76 0 4 chr1 224821959 224822229 -57371435 + AluY SINE Alu 44 312 0 288 137 0 0 chr1 224822337 224822388 -57371276 + (CA)n Simple_repeat Simple_repeat 2 52 0 2526 209 19 6 chr1 224822598 224823111 -57370553 - MLT2B1 LTR ERVL 0 520 1 1606 178 10 17 chr1 224823330 224823628 -57370036 + AluSx SINE Alu 1 296 -16 309 220 20 40 chr1 224825077 224825177 -57368487 - MER94 DNA DNA -36 98 1 381 226 142 0 chr1 224825938 224826044 -57367620 - MER63 DNA MER1_type -315 747 1 210 246 0 0 chr1 224826153 224826214 -57367450 + CT-rich Low_complexity Low_complexity 1 61 0 1760 248 41 67 chr1 224826831 224827532 -57366132 - LTR8 LTR ERV1 -8 683 1 268 228 43 22 chr1 224828106 224828198 -57365466 + MLT1J1 LTR MaLR 351 444 -2 23 33 0 0 chr1 224828972 224829002 -57364662 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr1 224829132 224829162 -57364502 + AT_rich Low_complexity Low_complexity 1 30 0 1900 181 8 8 chr1 224829422 224829781 -57363883 - L1MA6 LINE L1 0 6300 5942 1470 195 60 0 chr1 224829781 224830083 -57363581 + L1MA6 LINE L1 5615 5934 -366 282 323 8 0 chr1 224830142 224830272 -57363392 - L1M4 LINE L1 -1529 4617 4487 325 319 89 26 chr1 224830369 224830560 -57363104 - L1M4 LINE L1 -1806 4340 4138 2077 116 0 7 chr1 224832974 224833276 -57360388 + AluSq SINE Alu 1 300 -13 216 0 0 0 chr1 224834405 224834429 -57359235 + (A)n Simple_repeat Simple_repeat 1 24 0 259 189 0 56 chr1 224834761 224834904 -57358760 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 27 29 0 0 chr1 224834992 224835026 -57358638 + AT_rich Low_complexity Low_complexity 1 34 0 211 171 0 61 chr1 224835217 224835299 -57358365 + (TTATA)n Simple_repeat Simple_repeat 2 78 0 22 0 0 0 chr1 224836137 224836159 -57357505 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr1 224836763 224836798 -57356866 + AT_rich Low_complexity Low_complexity 1 35 0 2127 129 59 8 chr1 224837244 224837601 -57356063 - THE1C LTR MaLR 0 375 1 8924 134 35 40 chr1 224837601 224839188 -57354476 - THE1C-int LTR MaLR 0 1580 1 2207 132 44 11 chr1 224839188 224839551 -57354113 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr1 224839608 224839634 -57354030 + AT_rich Low_complexity Low_complexity 1 26 0 28 71 0 0 chr1 224839929 224839985 -57353679 + AT_rich Low_complexity Low_complexity 1 56 0 362 264 168 6 chr1 224840140 224840307 -57353357 - MER5C DNA MER1_type 0 324 131 595 200 42 0 chr1 224841008 224841128 -57352536 - MER5C DNA MER1_type -199 125 1 488 324 107 31 chr1 224841896 224842380 -57351284 + LTR33 LTR ERVL 1 521 0 535 301 82 9 chr1 224842489 224842831 -57350833 + L1ME1 LINE L1 4747 5113 -1033 854 184 92 0 chr1 224842955 224843140 -57350524 + MLT2C1 LTR ERVL 1 202 -195 592 277 22 0 chr1 224843154 224843338 -57350326 + L1PB1 LINE L1 6 193 -6670 9498 198 80 15 chr1 224843341 224848999 -57344665 + L1PB1 LINE L1 652 6867 0 538 269 19 13 chr1 224849043 224849199 -57344465 + MLT2C1 LTR ERVL 193 349 -48 1882 234 16 5 chr1 224849227 224849607 -57344057 + ERVL LTR ERVL 3364 3747 -2017 1312 211 4 4 chr1 224849613 224849860 -57343804 + MLT2C1 LTR ERVL 100 346 -51 436 262 36 8 chr1 224850017 224850243 -57343421 + L1ME1 LINE L1 5282 5519 -646 366 65 0 81 chr1 224850218 224850280 -57343384 + L1P5 LINE L1 5556 5612 -539 * 557 232 77 56 chr1 224850652 224850762 -57342902 + L1MEc LINE L1 1865 1971 -4425 491 117 13 0 chr1 224850762 224850839 -57342825 + MADE1 DNA Mariner 3 80 0 557 232 77 56 chr1 224850839 224851068 -57342596 + L1MEc LINE L1 1971 2211 -4185 454 267 9 78 chr1 224851047 224851264 -57342400 + L1ME1 LINE L1 5940 6141 -94 * 29 0 0 0 chr1 224851730 224851759 -57341905 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 224852391 224852412 -57341252 + AT_rich Low_complexity Low_complexity 1 21 0 1708 161 20 77 chr1 224853334 224853724 -57339940 - L1MA4A LINE L1 -321 5982 5615 6174 190 51 4 chr1 224853726 224855381 -57338283 - L1 LINE L1 -3585 3623 1887 522 254 24 0 chr1 224855382 224855508 -57338156 - L1 LINE L1 -5844 1365 1237 203 152 0 0 chr1 224856892 224856925 -57336739 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 342 325 83 44 chr1 224859292 224859520 -57334144 - MIR SINE MIR -3 259 23 2049 132 53 34 chr1 224861323 224861679 -57331985 - THE1B LTR MaLR 0 364 2 3989 24 0 0 chr1 224862424 224862908 -57330756 + L1PA3 LINE L1 5676 6159 0 181 333 70 61 chr1 224864224 224864338 -57329326 + MIR SINE MIR 30 144 -64 385 267 23 53 chr1 224864452 224864583 -57329081 - L1MC4 LINE L1 -119 7923 7797 1030 312 72 33 chr1 224864769 224865179 -57328485 - L1MC4 LINE L1 -530 7512 7119 1328 214 23 13 chr1 224865179 224865487 -57328177 - AluJo SINE Alu -1 311 1 1030 312 72 33 chr1 224865487 224866007 -57327657 - L1MC4 LINE L1 -923 7119 6451 1267 180 73 0 chr1 224866226 224866471 -57327193 + MER2 DNA MER2_type 2 264 -81 1751 161 14 0 chr1 224866507 224866786 -57326878 - AluSx SINE Alu -26 286 4 405 225 0 12 chr1 224866789 224866869 -57326795 + MER2 DNA MER2_type 256 334 -11 269 319 124 35 chr1 224867752 224867921 -57325743 + LTR16A LTR ERVL 258 441 -9 315 0 0 0 chr1 224867921 224867956 -57325708 + (CA)n Simple_repeat Simple_repeat 2 36 0 229 199 15 61 chr1 224868662 224868793 -57324871 + (TATAA)n Simple_repeat Simple_repeat 1 125 0 731 205 50 21 chr1 224868835 224869100 -57324564 + MER66B LTR ERV1 185 478 0 200 170 19 19 chr1 224869983 224870036 -57323628 + A-rich Low_complexity Low_complexity 3 55 0 21 0 0 0 chr1 224871928 224871949 -57321715 + AT_rich Low_complexity Low_complexity 1 21 0 181 427 0 13 chr1 224871996 224872071 -57321593 - MIR SINE MIR -169 93 20 239 188 0 14 chr1 224872135 224872204 -57321460 + (TA)n Simple_repeat Simple_repeat 1 68 0 26 30 0 0 chr1 224872259 224872292 -57321372 + AT_rich Low_complexity Low_complexity 1 33 0 1411 231 40 19 chr1 224872560 224873149 -57320515 + L1MD1 LINE L1 5036 5633 -609 350 237 52 10 chr1 224873230 224873327 -57320337 + L1MD1 LINE L1 5915 6015 -227 4014 193 22 47 chr1 224873342 224874357 -57319307 + L1PB4 LINE L1 4091 5079 -1067 734 203 21 0 chr1 224874373 224874516 -57319148 - MER61D LTR ERV1 -18 483 338 353 203 55 16 chr1 224874990 224875118 -57318546 + L1PB4 LINE L1 5075 5207 -939 826 123 0 0 chr1 224875219 224875341 -57318323 + L1PB3 LINE L1 6033 6154 0 3446 166 36 3 chr1 224875351 224876008 -57317656 + L1PB4 LINE L1 5477 6155 -1 435 171 234 86 chr1 224876008 224876183 -57317481 + L1MD1 LINE L1 6027 6227 -15 2150 108 0 0 chr1 224876684 224876971 -57316693 - AluSc SINE Alu -22 287 1 207 373 0 0 chr1 224877238 224877305 -57316359 + MIR3 SINE MIR 129 195 -13 23 33 0 0 chr1 224877501 224877531 -57316133 + AT_rich Low_complexity Low_complexity 1 30 0 26 82 0 0 chr1 224878118 224878179 -57315485 + AT_rich Low_complexity Low_complexity 1 61 0 227 330 52 47 chr1 224878191 224878382 -57315282 + Charlie7 DNA MER1_type 189 380 -2232 290 296 61 65 chr1 224878390 224878896 -57314768 + L1ME LINE L1 4475 4978 -1168 251 287 103 20 chr1 224879016 224879354 -57314310 + L1ME LINE L1 5201 5573 -589 1799 170 33 9 chr1 224879668 224880003 -57313661 - MER61A LTR ERV1 0 343 1 23026 96 45 16 chr1 224880003 224881561 -57312103 - MER61A-int LTR ERV1 0 5217 3706 2239 68 4 0 chr1 224881561 224881868 -57311796 + AluY SINE Alu 1 308 0 23026 96 45 16 chr1 224881868 224883813 -57309851 - MER61A-int LTR ERV1 -1511 3706 1655 190 331 195 13 chr1 224884821 224884975 -57308689 - L2 LINE L2 -575 2739 2558 506 350 51 12 chr1 224885054 224885385 -57308279 - MER20B DNA MER1_type -219 564 221 220 219 0 0 chr1 224885393 224885434 -57308230 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 407 290 77 53 chr1 224886161 224886368 -57307296 + MLT1J LTR MaLR 298 509 -2 628 144 25 0 chr1 224887341 224887459 -57306205 + L1MA8 LINE L1 6166 6286 -5 309 287 154 14 chr1 224887960 224888103 -57305561 + MLT1J LTR MaLR 1 163 -348 4467 156 29 3 chr1 224888215 224890105 -57303559 - L1PBa LINE L1 -3019 3843 1852 6751 38 2 6 chr1 224890105 224890940 -57302724 - L1PA4 LINE L1 0 6155 5324 6227 150 17 2 chr1 224890940 224892007 -57301657 - L1PBa LINE L1 -5015 1848 766 23 0 0 0 chr1 224892570 224892593 -57301071 + AT_rich Low_complexity Low_complexity 1 23 0 1425 220 3 7 chr1 224892619 224892919 -57300745 - L1MB1 LINE L1 -64 6104 5806 255 125 0 0 chr1 224893022 224893062 -57300602 + (TA)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr1 224893964 224893995 -57299669 + AT_rich Low_complexity Low_complexity 1 31 0 27 96 0 0 chr1 224894025 224894108 -57299556 + AT_rich Low_complexity Low_complexity 1 83 0 942 310 58 47 chr1 224894429 224894916 -57298748 - L1MCc LINE L1 -5149 1274 783 23 0 0 0 chr1 224895094 224895117 -57298547 + AT_rich Low_complexity Low_complexity 1 23 0 814 345 22 17 chr1 224895293 224895757 -57297907 - L1MCc LINE L1 -5930 493 28 1384 244 41 53 chr1 224895870 224896379 -57297285 + MLT1D LTR MaLR 1 503 -2 36 70 0 0 chr1 224896440 224896511 -57297153 + AT_rich Low_complexity Low_complexity 1 71 0 7426 153 39 6 chr1 224896570 224897913 -57295751 - Tigger1 DNA MER2_type 0 2418 1031 3369 130 17 26 chr1 224897911 224898440 -57295224 + MER1A DNA MER1_type 6 529 0 * 4011 151 36 29 chr1 224898441 224899343 -57294321 - Tigger1 DNA MER2_type -1399 1019 1 2134 322 64 17 chr1 224899350 224900504 -57293160 - L1MEc LINE L1 -5159 1237 30 25 75 0 0 chr1 224900856 224900909 -57292755 + AT_rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chr1 224901138 224901163 -57292501 + AT_rich Low_complexity Low_complexity 1 25 0 274 293 136 0 chr1 224902164 224902304 -57291360 + MLT1F1 LTR MaLR 190 348 -219 * 398 234 56 0 chr1 224902301 224902408 -57291256 + MLT1F1 LTR MaLR 455 567 0 246 351 11 0 chr1 224902562 224902656 -57291008 + MLT1L LTR MaLR 97 191 -424 2312 186 40 9 chr1 224902656 224903103 -57290561 + LOR1b LTR ERV1 1 461 0 26 30 0 0 chr1 224903212 224903245 -57290419 + AT_rich Low_complexity Low_complexity 1 33 0 1435 201 23 84 chr1 224903325 224903718 -57289946 + MLT1A2 LTR MaLR 1 369 -5 2049 135 0 19 chr1 224904073 224904384 -57289280 - AluSx SINE Alu -3 309 5 291 207 50 25 chr1 224904548 224904669 -57288995 - L1MEc LINE L1 -4974 1422 1299 23 0 0 0 chr1 224904950 224904973 -57288691 + AT_rich Low_complexity Low_complexity 1 23 0 3639 111 0 4 chr1 224905039 224905551 -57288113 + MER9 LTR ERVK 2 511 0 2010 129 3 3 chr1 224906007 224906310 -57287354 - AluSg SINE Alu -7 303 1 21 36 0 0 chr1 224906353 224906381 -57287283 + AT_rich Low_complexity Low_complexity 1 28 0 475 340 36 16 chr1 224906594 224906844 -57286820 + MIR SINE MIR 8 262 0 2189 179 45 16 chr1 224907024 224907472 -57286192 + LOR1b LTR ERV1 1 461 0 24 0 0 0 chr1 224907987 224908011 -57285653 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr1 224908758 224908787 -57284877 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 243 483 21 78 chr1 224908979 224909366 -57284298 - L2 LINE L2 -13 3300 2936 551 194 65 0 chr1 224910495 224910603 -57283061 + FLAM_A SINE Alu 9 123 -19 33 43 0 0 chr1 224911539 224911586 -57282078 + AT_rich Low_complexity Low_complexity 1 47 0 22 56 0 0 chr1 224911664 224911700 -57281964 + AT_rich Low_complexity Low_complexity 1 36 0 235 193 18 53 chr1 224911974 224912031 -57281633 - MLT1J2 LTR MaLR -64 386 332 263 306 0 0 chr1 224912165 224912250 -57281414 - MLT1J1 LTR MaLR -330 116 32 1875 198 8 6 chr1 224912313 224912671 -57280993 + L1PA16 LINE L1 3 361 -6488 2306 166 10 5 chr1 224912684 224913088 -57280576 + MSTA LTR MaLR 19 424 -4 2066 131 3 3 chr1 224913103 224913415 -57280249 + AluSx SINE Alu 1 312 0 1239 255 57 43 chr1 224913415 224913784 -57279880 + L1PA16 LINE L1 360 733 -6116 2619 273 84 22 chr1 224914216 224916103 -57277561 + L1PA16 LINE L1 1377 3514 -3335 8411 214 35 40 chr1 224916480 224919704 -57273960 + L1PA16 LINE L1 3425 6609 -260 192 97 0 0 chr1 224920294 224920325 -57273339 + (TTA)n Simple_repeat Simple_repeat 2 32 0 25 65 0 0 chr1 224920471 224920517 -57273147 + AT_rich Low_complexity Low_complexity 1 46 0 23 68 0 0 chr1 224921028 224921072 -57272592 + AT_rich Low_complexity Low_complexity 1 44 0 3726 257 52 36 chr1 224921348 224922638 -57271026 + L1MA4 LINE L1 16 2019 -5546 7055 179 39 43 chr1 224922738 224924816 -57268848 + L1MA4 LINE L1 5156 7228 -482 686 142 18 0 chr1 224924831 224924944 -57268720 + THE1C LTR MaLR 259 373 -2 2435 154 36 8 chr1 224924944 224925419 -57268245 + L1MA4 LINE L1 7226 7713 -6 346 254 95 24 chr1 224926019 224926188 -57267476 - L1 LINE L1 -1704 4442 4262 321 151 35 0 chr1 224926836 224926922 -57266742 + (TA)n Simple_repeat Simple_repeat 1 89 0 27 49 0 0 chr1 224926937 224926978 -57266686 + AT_rich Low_complexity Low_complexity 1 41 0 222 254 16 0 chr1 224926978 224927041 -57266623 + (TA)n Simple_repeat Simple_repeat 2 65 0 24 0 0 0 chr1 224927300 224927324 -57266340 + AT_rich Low_complexity Low_complexity 1 24 0 426 241 50 35 chr1 224929091 224929232 -57264432 - LTR67 LTR ERVL -8 549 407 795 274 32 35 chr1 224929464 224929807 -57263857 - L1ME3A LINE L1 -11 6159 5818 210 353 42 25 chr1 224930766 224930885 -57262779 + MIR SINE MIR 23 143 -119 536 154 19 0 chr1 224930950 224931054 -57262610 + L1MA9 LINE L1 5284 5389 -923 2092 159 28 57 chr1 224931070 224931496 -57262168 + L1MA9 LINE L1 5528 5940 -372 2397 66 0 0 chr1 224931496 224931797 -57261867 + AluY SINE Alu 1 301 -10 2092 159 28 57 chr1 224931797 224931841 -57261823 + L1MA9 LINE L1 5940 5984 -328 25 31 0 0 chr1 224931925 224931957 -57261707 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr1 224932804 224932829 -57260835 + AT_rich Low_complexity Low_complexity 1 25 0 201 196 0 0 chr1 224933457 224933503 -57260161 + (CAG)n Simple_repeat Simple_repeat 2 47 0 1290 198 22 15 chr1 224934273 224934541 -57259123 + AluJo SINE Alu 4 273 -39 35 24 0 0 chr1 224934545 224934587 -57259077 + AT_rich Low_complexity Low_complexity 1 42 0 432 0 0 0 chr1 224935603 224935651 -57258013 + (TG)n Simple_repeat Simple_repeat 2 49 0 357 24 0 0 chr1 224935650 224935692 -57257972 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 180 279 16 0 chr1 224936235 224936296 -57257368 - L2 LINE L2 -225 3047 2986 299 365 130 37 chr1 224936400 224937192 -57256472 - L2 LINE L2 -459 2855 1990 422 405 32 20 chr1 224938680 224939026 -57254638 + L2 LINE L2 2622 2971 -343 26 0 0 0 chr1 224939395 224939421 -57254243 + AT_rich Low_complexity Low_complexity 1 26 0 186 103 0 0 chr1 224940191 224940220 -57253444 + (GA)n Simple_repeat Simple_repeat 2 30 0 417 281 73 18 chr1 224940427 224940591 -57253073 + MER20B DNA MER1_type 1 173 -610 2783 264 65 24 chr1 224940621 224941906 -57251758 + L1M4 LINE L1 2714 4051 -2095 407 180 22 17 chr1 224941991 224942169 -57251495 + (TA)n Simple_repeat Simple_repeat 2 180 0 25 0 0 0 chr1 224942196 224942221 -57251443 + AT_rich Low_complexity Low_complexity 1 25 0 235 122 82 41 chr1 224942588 224942637 -57251027 + LTR67 LTR ERVL 366 416 -141 2281 226 57 0 chr1 224942845 224943355 -57250309 + Tigger3b DNA MER2_type 2 540 -691 225 65 0 0 chr1 224943357 224943388 -57250276 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6841 21 1 0 chr1 224943422 224944218 -57249446 - L1PA2 LINE L1 0 6155 5359 * 8964 32 2 1 chr1 224944212 224945287 -57248377 + L1P LINE L1 4027 5102 -1044 5397 16 3 0 chr1 224945416 224946041 -57247623 - L1PA2 LINE L1 -170 5985 5359 * 11293 28 2 0 chr1 224946035 224947388 -57246276 + L1PA2 LINE L1 4027 5382 -764 253 152 190 0 chr1 224947388 224947467 -57246197 + Tigger3b DNA MER2_type 532 625 -606 432 117 0 0 chr1 224947480 224947557 -57246107 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2094 93 4 0 chr1 224947557 224947837 -57245827 - AluY SINE Alu -30 281 1 2841 130 26 18 chr1 224947840 224948334 -57245330 + Tigger3b DNA MER2_type 623 1120 -112 12987 166 58 36 chr1 224949852 224951466 -57242198 - Tigger4(Zombi) DNA MER2_type 0 2731 1155 2253 70 7 0 chr1 224951466 224951753 -57241911 - AluY SINE Alu -22 289 1 12987 166 58 36 chr1 224951753 224952405 -57241259 - Tigger4(Zombi) DNA MER2_type -1576 1155 393 2054 142 3 0 chr1 224952405 224952715 -57240949 - AluSx SINE Alu -1 311 1 12987 166 58 36 chr1 224952715 224953118 -57240546 - Tigger4(Zombi) DNA MER2_type -2338 393 1 659 267 78 5 chr1 224953760 224953977 -57239687 - MER115 DNA AcHobo -8 685 453 7504 23 1 3 chr1 224954330 224955594 -57238070 + L1PA3 LINE L1 4890 6152 -3 32 0 0 0 chr1 224955595 224955627 -57238037 + AT_rich Low_complexity Low_complexity 1 32 0 23 78 0 0 chr1 224956088 224956139 -57237525 + AT_rich Low_complexity Low_complexity 1 51 0 1469 187 16 29 chr1 224956608 224957060 -57236604 - L1MA6 LINE L1 -695 5605 5161 3247 159 23 65 chr1 224957061 224957224 -57236440 + L1MA6 LINE L1 5600 5768 -532 1128 214 132 23 chr1 224957224 224957490 -57236174 + AluJb SINE Alu 1 295 -7 3247 159 23 65 chr1 224957490 224958055 -57235609 + L1MA6 LINE L1 5768 6298 -2 328 252 63 19 chr1 224958138 224958297 -57235367 + HsTC2 DNA Tc2 1732 1897 -1 430 248 75 15 chr1 224959364 224959497 -57234167 + MLT1G LTR MaLR 14 154 -436 228 308 0 0 chr1 224959544 224959609 -57234055 - L1MEc LINE L1 -5834 562 498 323 256 12 0 chr1 224959685 224959771 -57233893 - L1MEc LINE L1 -6271 125 39 30 27 0 0 chr1 224959902 224959939 -57233725 + AT_rich Low_complexity Low_complexity 1 37 0 261 366 122 6 chr1 224960062 224960226 -57233438 - MER5A DNA MER1_type 0 189 7 23 0 0 0 chr1 224960638 224960661 -57233003 + AT_rich Low_complexity Low_complexity 1 23 0 1557 279 80 27 chr1 224961314 224961866 -57231798 + L1MA8 LINE L1 466 1046 -6443 4968 246 58 31 chr1 224961942 224962861 -57230803 + L1MA8 LINE L1 1964 2857 -4708 1897 173 0 0 chr1 224962861 224963162 -57230502 + AluSx SINE Alu 1 301 -11 4968 246 58 31 chr1 224963162 224965396 -57228268 + L1MA8 LINE L1 2857 5208 -2357 2156 121 0 0 chr1 224965397 224965694 -57227970 + AluSg SINE Alu 1 297 -13 398 118 38 75 chr1 224965696 224965882 -57227782 + (TA)n Simple_repeat Simple_repeat 2 180 0 364 130 143 0 chr1 224965912 224966066 -57227598 + (CATAT)n Simple_repeat Simple_repeat 5 180 0 248 47 47 78 chr1 224966085 224966213 -57227451 + (TA)n Simple_repeat Simple_repeat 2 125 0 7592 187 32 25 chr1 224966220 224967954 -57225710 + L1MA8 LINE L1 5200 6961 -749 2410 59 0 29 chr1 224967954 224968261 -57225403 - AluY SINE Alu -9 302 5 7592 187 32 25 chr1 224968261 224968843 -57224821 + L1MA8 LINE L1 6961 7538 -172 584 206 0 8 chr1 224968845 224968971 -57224693 + FRAM SINE Alu 45 169 -7 646 238 18 0 chr1 224968971 224969139 -57224525 + L1MA8 LINE L1 7540 7710 0 255 146 0 0 chr1 224969905 224969946 -57223718 + MADE1 DNA Mariner 40 80 0 200 321 119 9 chr1 224970304 224970413 -57223251 + MIR SINE MIR 99 219 -43 180 152 0 0 chr1 224970465 224970498 -57223166 + (CATA)n Simple_repeat Simple_repeat 4 36 0 1914 121 7 20 chr1 224971362 224971660 -57222004 - AluSx SINE Alu -18 294 1 289 379 90 17 chr1 224972060 224972296 -57221368 + LTR33A LTR ERVL 63 327 -196 1465 229 178 12 chr1 224972296 224972728 -57220936 + MLT1D LTR MaLR 2 505 0 289 379 90 17 chr1 224972728 224972792 -57220872 + LTR33A LTR ERVL 327 385 -138 2414 263 78 17 chr1 224973224 224974481 -57219183 + L1MEc LINE L1 412 1915 -4625 695 214 173 67 chr1 224974475 224974674 -57218990 + L1M4 LINE L1 4803 4980 -1166 * 2491 74 0 0 chr1 224974674 224974985 -57218679 + AluY SINE Alu 1 311 0 695 214 173 67 chr1 224974985 224975127 -57218537 + L1M4 LINE L1 4980 5180 -966 * 1800 245 90 16 chr1 224975126 224975791 -57217873 - L1MDa LINE L1 -3920 2620 1907 743 179 7 7 chr1 224975794 224975945 -57217719 - L1MB3 LINE L1 -1 6182 6032 21 71 0 0 chr1 224975951 224975993 -57217671 + AT_rich Low_complexity Low_complexity 1 42 0 2625 206 31 74 chr1 224976004 224976745 -57216919 - L1MB5 LINE L1 -138 6036 5328 1952 155 12 206 chr1 224976743 224976892 -57216772 + L1P LINE L1 4648 4824 -1322 * 2185 101 27 0 chr1 224976892 224977188 -57216476 + AluSx SINE Alu 1 304 -8 1952 155 12 206 chr1 224977188 224977542 -57216122 + L1P LINE L1 4824 4935 -1211 279 0 0 0 chr1 224977542 224977573 -57216091 + (TG)n Simple_repeat Simple_repeat 2 32 0 1952 155 12 206 chr1 224977573 224977885 -57215779 + L1P LINE L1 4935 5306 -840 647 200 100 18 chr1 224977948 224978118 -57215546 + L1MD1 LINE L1 6027 6210 -32 281 267 30 15 chr1 224978171 224978302 -57215362 + L1MEc LINE L1 1952 2084 -4637 318 308 144 23 chr1 224978435 224978740 -57214924 - L1MDa LINE L1 -3966 2574 2233 13708 166 52 21 chr1 224978919 224985391 -57208273 + L1MA1 LINE L1 1028 7711 -10 3392 194 37 15 chr1 224986501 224986620 -57207044 + L1MA5 LINE L1 5551 5666 -634 12264 150 39 50 chr1 224986620 224989063 -57204601 - Tigger1 DNA MER2_type 0 2418 3 3392 194 37 15 chr1 224989063 224989677 -57203987 + L1MA5 LINE L1 5666 6300 0 201 74 0 0 chr1 224990729 224990756 -57202908 + (T)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chr1 224991206 224991239 -57202425 + AT_rich Low_complexity Low_complexity 1 33 0 32 26 0 0 chr1 224991250 224991289 -57202375 + AT_rich Low_complexity Low_complexity 1 39 0 180 125 0 0 chr1 224991747 224991779 -57201885 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 378 334 23 45 chr1 224992175 224992388 -57201276 - MER63B DNA MER1_type 0 1062 2 50 18 0 0 chr1 224992607 224992664 -57201000 + AT_rich Low_complexity Low_complexity 1 57 0 2438 107 6 3 chr1 224994217 224994571 -57199093 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr1 224994571 224994596 -57199068 + AT_rich Low_complexity Low_complexity 1 25 0 2167 115 10 0 chr1 224994751 224995056 -57198608 - AluSc SINE Alu -1 308 1 7253 152 36 22 chr1 224995320 224997791 -57195873 - L1MA2 LINE L1 0 6304 3801 211 219 31 31 chr1 224997903 224997967 -57195697 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 31 68 0 0 chr1 224998414 224998473 -57195191 + AT_rich Low_complexity Low_complexity 1 59 0 39 22 0 0 chr1 224999248 224999294 -57194370 + AT_rich Low_complexity Low_complexity 1 46 0 52 78 0 0 chr1 224999789 224999904 -57193760 + AT_rich Low_complexity Low_complexity 1 115 0 756 259 42 28 chr1 225001831 225002047 -57191617 + MER58A DNA MER1_type 1 219 -5 1332 218 63 59 chr1 225002165 225002642 -57191022 - MLT1D LTR MaLR 0 505 27 2214 36 53 40 chr1 225002784 225003087 -57190577 + AluY SINE Alu 1 307 -4 341 206 113 10 chr1 225003571 225003668 -57189996 + MLT1F1-int LTR MaLR 1606 1712 -23 1930 133 6 6 chr1 225003828 225004143 -57189521 - L1PA16 LINE L1 -9 6157 5843 875 231 88 19 chr1 225004143 225004359 -57189305 + MLT1F1 LTR MaLR 129 359 -208 225 318 86 50 chr1 225004504 225004866 -57188798 + HsTC2 DNA Tc2 503 877 -1021 500 304 97 14 chr1 225004938 225005155 -57188509 - MIR SINE MIR -10 252 18 206 81 27 0 chr1 225005434 225005471 -57188193 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 207 0 0 0 chr1 225005485 225005508 -57188156 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3315 268 28 51 chr1 225005794 225007089 -57186575 + L1M3b LINE L1 603 1761 -4520 198 0 0 0 chr1 225007229 225007251 -57186413 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 7474 33 0 1 chr1 225007256 225008722 -57184942 - L1PA4 LINE L1 -3 6152 4688 1104 195 66 26 chr1 225008837 225009109 -57184555 - AluJb SINE Alu -19 283 1 522 188 30 0 chr1 225009166 225009267 -57184397 + FLAM_A SINE Alu 20 123 -19 27 49 0 0 chr1 225009423 225009464 -57184200 + AT_rich Low_complexity Low_complexity 1 41 0 583 242 0 0 chr1 225009487 225009611 -57184053 - FLAM_A SINE Alu -6 127 4 223 208 19 0 chr1 225009941 225009994 -57183670 + T-rich Low_complexity Low_complexity 2 55 0 722 200 22 44 chr1 225010016 225010196 -57183468 - MER20 DNA MER1_type -10 209 34 24 0 0 0 chr1 225010268 225010292 -57183372 + AT_rich Low_complexity Low_complexity 1 24 0 965 250 0 19 chr1 225010552 225010760 -57182904 - MER58A DNA MER1_type -19 205 2 474 49 0 0 chr1 225011245 225011306 -57182358 + (TG)n Simple_repeat Simple_repeat 2 62 0 2294 264 37 13 chr1 225011860 225012539 -57181125 - L1ME1 LINE L1 -5 6555 5861 490 304 132 47 chr1 225012702 225013255 -57180409 - L1ME1 LINE L1 -4432 2108 1509 205 177 0 48 chr1 225013339 225013401 -57180263 + (CATA)n Simple_repeat Simple_repeat 2 60 0 455 333 18 6 chr1 225013403 225013568 -57180096 - MIR SINE MIR -87 175 9 201 175 0 0 chr1 225013812 225013852 -57179812 + GA-rich Low_complexity Low_complexity 1 40 0 3444 53 0 0 chr1 225015499 225015929 -57177735 + L1PA5 LINE L1 5725 6154 0 2834 164 60 5 chr1 225016327 225016672 -57176992 - L1PB4 LINE L1 0 6156 5767 276 30 0 0 chr1 225016672 225016705 -57176959 + (TA)n Simple_repeat Simple_repeat 1 33 0 2834 164 60 5 chr1 225016705 225016921 -57176743 - L1PB4 LINE L1 -389 5767 5564 23 0 0 0 chr1 225018028 225018051 -57175613 + AT_rich Low_complexity Low_complexity 1 23 0 1201 167 41 68 chr1 225018735 225019029 -57174635 + AluJb SINE Alu 3 288 -14 432 241 9 0 chr1 225019289 225019397 -57174267 + L1ME1 LINE L1 5885 5993 -173 2215 127 0 0 chr1 225019553 225019861 -57173803 + AluSc SINE Alu 1 308 -1 498 291 93 52 chr1 225019868 225020157 -57173507 + L1M1 LINE L1 2822 3396 -4170 477 179 0 0 chr1 225020252 225020336 -57173328 + AluS SINE Alu 1 84 -229 3097 198 45 7 chr1 225020338 225020798 -57172866 + L1M1 LINE L1 4455 4957 -2608 180 0 0 0 chr1 225020798 225020818 -57172846 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3097 198 45 7 chr1 225020818 225021105 -57172559 + L1M1 LINE L1 4957 5231 -2334 231 191 73 0 chr1 225021118 225021186 -57172478 - L1 LINE L1 -2988 3158 3086 * 606 224 8 0 chr1 225021183 225021317 -57172347 + L1M1 LINE L1 5231 5365 -2200 341 298 11 58 chr1 225021427 225021618 -57172046 + MLT1L LTR MaLR 421 602 -13 2267 161 49 5 chr1 225022026 225022431 -57171233 - MSTB LTR MaLR 0 426 4 2820 145 56 6 chr1 225022690 225023193 -57170471 - HSMAR2 DNA Mariner -1 1301 774 1757 147 31 100 chr1 225023195 225023584 -57170080 - THE1B LTR MaLR -2 362 1 1836 97 0 4 chr1 225023584 225023843 -57169821 - THE1B-int LTR MaLR 0 1580 1323 468 148 28 19 chr1 225023962 225024070 -57169594 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 831 130 0 15 chr1 225024070 225024201 -57169463 + L1PA13 LINE L1 5782 5910 -253 401 60 0 0 chr1 225024200 225024250 -57169414 + L1PA13 LINE L1 5792 5841 -322 * 222 247 0 0 chr1 225024251 225024328 -57169336 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 1963 151 12 3 chr1 225024336 225024668 -57168996 - L1P4 LINE L1 -357 5806 5472 21 57 0 0 chr1 225024741 225024776 -57168888 + AT_rich Low_complexity Low_complexity 1 35 0 37 0 0 0 chr1 225025185 225025222 -57168442 + AT_rich Low_complexity Low_complexity 1 37 0 1418 158 0 32 chr1 225025519 225025793 -57167871 + THE1B LTR MaLR 1 355 0 2258 111 24 0 chr1 225025793 225026127 -57167537 + THE1B-int LTR MaLR 1 342 -1238 8431 119 13 5 chr1 225026231 225027466 -57166198 - THE1B-int LTR MaLR -335 1245 1 1867 174 31 20 chr1 225027470 225027826 -57165838 - THE1B LTR MaLR -4 360 1 553 211 8 16 chr1 225027826 225027954 -57165710 - MLT1A1 LTR MaLR -226 139 13 2305 100 0 0 chr1 225028415 225028726 -57164938 - AluY SINE Alu 0 311 1 8221 72 11 2 chr1 225029609 225030752 -57162912 - L1P LINE L1 -2301 3845 2692 6929 57 6 1 chr1 225030752 225032008 -57161656 + L1PA6 LINE L1 4861 6154 0 31 0 0 0 chr1 225032204 225032235 -57161429 + AT_rich Low_complexity Low_complexity 1 31 0 231 36 0 0 chr1 225032528 225032556 -57161108 + (A)n Simple_repeat Simple_repeat 1 28 0 315 375 22 54 chr1 225032556 225032740 -57160924 + L1MEc LINE L1 499 676 -6045 1981 209 32 28 chr1 225033010 225033473 -57160191 + MER76 LTR ERV 1 465 -223 5044 204 49 4 chr1 225033477 225034908 -57158756 + L1MC1 LINE L1 4842 6329 -4 22 35 0 0 chr1 225034948 225034977 -57158687 + AT_rich Low_complexity Low_complexity 1 29 0 323 23 23 0 chr1 225035005 225035049 -57158615 + (TG)n Simple_repeat Simple_repeat 2 46 0 615 280 86 64 chr1 225035094 225035733 -57157931 + L1MEc LINE L1 1541 2239 -4372 474 286 77 15 chr1 225035744 225036069 -57157595 + L1M4 LINE L1 4144 4488 -1658 1344 234 53 105 chr1 225036096 225036295 -57157369 + L1P4 LINE L1 4690 4898 -1267 1930 112 63 3 chr1 225036295 225036580 -57157084 - AluSq SINE Alu -8 305 4 1344 234 53 105 chr1 225036580 225036593 -57157071 + L1P4 LINE L1 4898 4910 -1255 2298 86 3 3 chr1 225036593 225036897 -57156767 - AluSx SINE Alu -8 304 1 1344 234 53 105 chr1 225036897 225037565 -57156099 + L1P4 LINE L1 4910 5488 -677 2455 68 0 3 chr1 225037565 225037875 -57155789 + AluY SINE Alu 1 309 -2 1344 234 53 105 chr1 225037875 225038156 -57155508 + L1P4 LINE L1 5488 5782 -383 362 266 59 44 chr1 225038178 225038400 -57155264 + L1ME2 LINE L1 5740 5974 -196 21 57 0 0 chr1 225039528 225039563 -57154101 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr1 225040132 225040166 -57153498 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr1 225041461 225041484 -57152180 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr1 225042118 225042147 -57151517 + AT_rich Low_complexity Low_complexity 1 29 0 292 353 38 25 chr1 225042260 225042498 -57151166 - HERVL LTR ERVL -730 4924 4684 570 370 49 9 chr1 225042549 225043105 -57150559 - HERVL LTR ERVL -1121 4643 4025 233 57 29 0 chr1 225043194 225043229 -57150435 + (TA)n Simple_repeat Simple_repeat 2 37 0 243 158 0 0 chr1 225043561 225043599 -57150065 - MLT2B1 LTR ERVL 0 520 483 384 130 0 0 chr1 225043599 225043668 -57149996 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1938 185 31 3 chr1 225043670 225044022 -57149642 - MLT2B1 LTR ERVL -158 362 1 1245 220 8 4 chr1 225044248 225044507 -57149157 + AluJo SINE Alu 23 282 -30 231 304 0 0 chr1 225044512 225044568 -57149096 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 294 328 61 65 chr1 225044816 225045063 -57148601 - HERVL LTR ERVL -3219 2435 2190 406 255 33 82 chr1 225046180 225046364 -57147300 + LTR41 LTR ERVL 1 175 -598 224 98 0 24 chr1 225047339 225047380 -57146284 + (TG)n Simple_repeat Simple_repeat 1 40 0 22 56 0 0 chr1 225048093 225048129 -57145535 + AT_rich Low_complexity Low_complexity 1 36 0 435 303 39 39 chr1 225048976 225049184 -57144480 + MLT1L LTR MaLR 37 244 -371 23 54 0 0 chr1 225049598 225049635 -57144029 + AT_rich Low_complexity Low_complexity 1 37 0 563 241 105 37 chr1 225049771 225049962 -57143702 - L1MA8 LINE L1 -140 6151 5948 494 179 14 7 chr1 225049957 225050085 -57143579 + L1MA8 LINE L1 6161 6287 -4 * 336 371 100 29 chr1 225050315 225050765 -57142899 - L2 LINE L2 -805 2509 2028 7198 94 5 1 chr1 225051059 225052838 -57140826 - L1PA7 LINE L1 -8 6146 4355 12358 95 9 3 chr1 225052838 225054649 -57139015 + L1PA7 LINE L1 2519 4341 -1805 262 294 73 0 chr1 225054975 225055084 -57138580 - L1ME LINE L1 -291 5879 5763 307 333 139 0 chr1 225055423 225055567 -57138097 - MIR SINE MIR -73 189 26 24 0 0 0 chr1 225056286 225056310 -57137354 + AT_rich Low_complexity Low_complexity 1 24 0 2177 115 0 7 chr1 225058199 225058503 -57135161 - AluSx SINE Alu -10 302 1 2077 99 13 35 chr1 225060782 225061096 -57132568 - AluSq SINE Alu 0 313 7 216 67 0 0 chr1 225062057 225062087 -57131577 + (TA)n Simple_repeat Simple_repeat 1 30 0 1239 229 49 5 chr1 225062161 225062606 -57131058 + MLT1D LTR MaLR 5 502 -3 1760 189 49 70 chr1 225063714 225064228 -57129436 - MLT1D LTR MaLR -2 503 1 424 200 200 0 chr1 225065166 225065321 -57128343 + MER53 DNA DNA 1 186 -3 460 310 94 6 chr1 225067010 225067181 -57126483 - MIR SINE MIR -30 232 47 25 31 0 0 chr1 225067508 225067540 -57126124 + AT_rich Low_complexity Low_complexity 1 32 0 219 139 0 0 chr1 225067833 225067869 -57125795 + (TG)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr1 225068331 225068356 -57125308 + AT_rich Low_complexity Low_complexity 1 25 0 1099 255 104 45 chr1 225068417 225068907 -57124757 - LTR40a LTR ERVL 0 519 1 324 256 0 12 chr1 225069199 225069281 -57124383 - MIR SINE MIR -104 158 78 211 265 118 52 chr1 225069540 225069676 -57123988 + MIR SINE MIR 118 262 0 2308 42 0 21 chr1 225070510 225070825 -57122839 - AluY SINE Alu 0 309 1 300 203 16 0 chr1 225070826 225070890 -57122774 + MER58B DNA MER1_type 172 236 -105 2033 126 3 0 chr1 225070894 225071180 -57122484 + AluSx SINE Alu 5 291 -21 370 218 39 0 chr1 225071192 225071270 -57122394 + MER58B DNA MER1_type 230 310 -31 337 312 24 16 chr1 225072122 225072247 -57121417 + L1MEc LINE L1 770 895 -5501 479 278 81 12 chr1 225072277 225072622 -57121042 + L1MEc LINE L1 974 1342 -5054 596 267 41 18 chr1 225072674 225072895 -57120769 + L1M4 LINE L1 4020 4245 -1901 614 262 81 0 chr1 225072896 225073068 -57120596 - MER58A DNA MER1_type 0 224 39 1084 196 25 97 chr1 225073221 225073542 -57120122 - MLT1C LTR MaLR -167 300 3 5525 234 47 47 chr1 225073550 225074479 -57119185 + L1M3 LINE L1 3370 4297 -1883 285 109 0 0 chr1 225074479 225074525 -57119139 + (CA)n Simple_repeat Simple_repeat 2 47 0 5525 234 47 47 chr1 225074525 225075688 -57117976 + L1M3 LINE L1 4297 5453 -727 22 0 0 0 chr1 225075793 225075815 -57117849 + AT_rich Low_complexity Low_complexity 1 22 0 2073 117 44 18 chr1 225075860 225075874 -57117790 - Tigger3b DNA MER2_type -2294 734 722 1911 156 37 3 chr1 225075874 225076227 -57117437 - L1MA5 LINE L1 -1 6299 5935 2073 117 44 18 chr1 225076227 225076598 -57117066 - Tigger3b DNA MER2_type -2306 722 339 1147 47 61 0 chr1 225076624 225076772 -57116892 + L1P2 LINE L1 5515 5671 -483 * 1676 163 82 8 chr1 225076770 225077126 -57116538 - L1MA5 LINE L1 -346 5954 5573 6353 161 35 105 chr1 225077131 225078918 -57114746 - L1MA5 LINE L1 -1218 4928 3266 900 215 27 43 chr1 225078988 225079072 -57114592 + MLT1D LTR MaLR 252 336 -169 240 35 0 0 chr1 225079072 225079101 -57114563 + (CAA)n Simple_repeat Simple_repeat 2 30 0 900 215 27 43 chr1 225079101 225079272 -57114392 + MLT1D LTR MaLR 336 503 -2 219 416 40 0 chr1 225079274 225079447 -57114217 + MIR SINE MIR 73 252 -10 * 334 331 16 24 chr1 225079445 225079569 -57114095 - L2 LINE L2 -1 3312 3190 433 260 160 59 chr1 225079580 225079799 -57113865 - MIR SINE MIR -4 258 18 21 0 0 0 chr1 225080092 225080113 -57113551 + AT_rich Low_complexity Low_complexity 1 21 0 2398 76 0 3 chr1 225080198 225080499 -57113165 - AluSc SINE Alu -9 300 1 2003 108 7 30 chr1 225080738 225081043 -57112621 - AluSx SINE Alu -14 298 1 27 0 0 0 chr1 225082351 225082378 -57111286 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr1 225082521 225082556 -57111108 + AT_rich Low_complexity Low_complexity 1 35 0 214 268 0 18 chr1 225082628 225082684 -57110980 + L2 LINE L2 3183 3237 -76 24 0 0 0 chr1 225082813 225082837 -57110827 + AT_rich Low_complexity Low_complexity 1 24 0 239 338 202 5 chr1 225083688 225083901 -57109763 + MIR SINE MIR 8 262 0 399 314 8 0 chr1 225084540 225084658 -57109006 - MLT1L LTR MaLR -80 535 417 7313 76 145 1 chr1 225084811 225085879 -57107785 - MER11B LTR ERVK -14 1222 1 286 290 60 10 chr1 225085885 225085985 -57107679 - MLT1L LTR MaLR -417 198 94 239 281 98 37 chr1 225086339 225086503 -57107161 - L2 LINE L2 -129 3184 3011 418 314 29 0 chr1 225087356 225087461 -57106203 + L2 LINE L2 3197 3304 -9 1249 145 72 0 chr1 225087902 225088151 -57105513 + L1MA7 LINE L1 6025 6291 0 300 365 75 47 chr1 225088219 225088581 -57105083 + L3 LINE CR1 1165 1536 -41 489 255 44 39 chr1 225089115 225089319 -57104345 + L1ME3A LINE L1 5961 6165 -5 3449 222 10 10 chr1 225089463 225090268 -57103396 + L1P LINE L1 4313 5117 -1029 270 280 7 73 chr1 225090325 225090475 -57103189 - MER77 LTR ERV1 -411 194 55 218 250 44 29 chr1 225090500 225090568 -57103096 + L2 LINE L2 3189 3257 -15 1875 172 105 18 chr1 225092439 225092829 -57100835 - MSTB LTR MaLR -2 424 1 918 223 103 10 chr1 225093004 225093296 -57100368 - MER45B DNA AcHobo -9 1031 713 729 318 41 70 chr1 225093404 225094091 -57099573 - MER45C DNA AcHobo -172 781 8 * 1106 248 77 23 chr1 225094088 225094398 -57099266 + MLT1E3 LTR MaLR 296 622 -2 370 337 69 54 chr1 225095487 225096307 -57097357 - L1ME3A LINE L1 -304 5866 5081 668 245 34 0 chr1 225096309 225096456 -57097208 + FRAM SINE Alu 2 153 -23 23 0 0 0 chr1 225097793 225097816 -57095848 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr1 225097870 225097896 -57095768 + (TG)n Simple_repeat Simple_repeat 2 27 0 2127 218 19 68 chr1 225097935 225098504 -57095160 - MER87 LTR ERV1 0 541 1 330 26 0 0 chr1 225099443 225099452 -57094212 + (TG)n Simple_repeat Simple_repeat 1 48 0 330 26 0 0 chr1 225099452 225099491 -57094173 + (TG)n Simple_repeat Simple_repeat 2 40 0 574 299 146 7 chr1 225100540 225100834 -57092830 - MLT1I LTR MaLR 0 409 75 26 30 0 0 chr1 225101492 225101525 -57092139 + AT_rich Low_complexity Low_complexity 1 33 0 204 213 85 0 chr1 225101867 225101914 -57091750 + MIR SINE MIR 2 52 -210 28 79 0 0 chr1 225102354 225102417 -57091247 + AT_rich Low_complexity Low_complexity 1 63 0 1143 185 116 74 chr1 225102477 225102909 -57090755 + LTR7 LTR ERV1 1 450 0 1404 204 48 0 chr1 225103294 225103588 -57090076 + AluJb SINE Alu 1 308 -4 590 144 14 34 chr1 225103592 225103885 -57089779 + GA-rich Low_complexity Low_complexity 1 287 0 303 311 30 15 chr1 225103891 225104026 -57089638 + MER57B LTR ERV1 86 222 -212 3422 92 23 0 chr1 225104095 225104576 -57089088 - LTR14C LTR ERVK 0 587 96 4706 111 136 89 chr1 225104579 225106058 -57087606 - pTR5 LTR ERV1 0 2438 744 767 41 20 0 chr1 225106058 225106156 -57087508 - LTR14C LTR ERVK -487 100 1 334 308 62 0 chr1 225106158 225106304 -57087360 + MER57A LTR ERV1 249 403 0 786 306 43 63 chr1 225106304 225106814 -57086850 + L1MCc LINE L1 98 597 -5826 262 256 54 47 chr1 225107067 225107196 -57086468 + L1MCc LINE L1 2960 3089 -4033 968 259 99 67 chr1 225107207 225107452 -57086212 + L1MCc LINE L1 3324 3560 -3381 2286 109 0 0 chr1 225107452 225107764 -57085900 + AluSx SINE Alu 1 312 0 968 259 99 67 chr1 225107764 225108304 -57085360 + L1MCc LINE L1 3560 4134 -2807 1252 278 44 21 chr1 225108323 225108844 -57084820 + L1MCc LINE L1 4254 4786 -2155 22 0 0 0 chr1 225108888 225108910 -57084754 + AT_rich Low_complexity Low_complexity 1 22 0 2361 270 73 35 chr1 225109078 225109208 -57084456 - L1MEc LINE L1 -3970 2426 2302 1882 149 0 10 chr1 225109208 225109503 -57084161 - AluSx SINE Alu -20 292 1 2361 270 73 35 chr1 225109503 225110692 -57082972 - L1MEc LINE L1 -4094 2302 1057 31 96 0 0 chr1 225111580 225111674 -57081990 + AT_rich Low_complexity Low_complexity 1 94 0 200 360 52 12 chr1 225111871 225112043 -57081621 - MIR3 SINE MIR -27 181 3 1743 166 0 7 chr1 225112690 225112979 -57080685 + AluJo SINE Alu 3 289 -23 21 0 0 0 chr1 225113191 225113212 -57080452 + AT_rich Low_complexity Low_complexity 1 21 0 233 343 0 0 chr1 225113714 225113787 -57079877 - L2 LINE L2 -44 3269 3197 1735 172 3 3 chr1 225114383 225114668 -57078996 + AluJo SINE Alu 1 285 -27 3918 164 15 31 chr1 225114791 225115537 -57078127 + MER50 LTR ERV1 1 734 0 6117 154 34 9 chr1 225115537 225117262 -57076402 + MER50-int LTR ERV1 1 1848 -5357 * 16128 180 36 38 chr1 225117259 225121041 -57072623 + MER50-int LTR ERV1 2789 7202 -3 3680 168 27 27 chr1 225121043 225121758 -57071906 + MER50 LTR ERV1 8 722 -12 240 233 45 104 chr1 225121917 225122119 -57071545 + MER67C LTR ERV1 55 244 -466 2079 110 7 0 chr1 225122514 225122804 -57070860 + AluSq SINE Alu 1 292 -21 1746 164 24 0 chr1 225122945 225123237 -57070427 + MER50 LTR ERV1 1 299 -573 507 325 29 12 chr1 225123720 225123960 -57069704 - L2 LINE L2 -1210 2104 1861 339 344 78 19 chr1 225124036 225124306 -57069358 - L2 LINE L2 -1204 2110 1825 1352 221 37 0 chr1 225125134 225125406 -57068258 + AluJb SINE Alu 1 282 -30 209 139 23 23 chr1 225125431 225125474 -57068190 + (CA)n Simple_repeat Simple_repeat 1 43 0 4208 191 88 20 chr1 225125573 225126466 -57067198 + LTR28 LTR ERV1 1 954 -66 306 296 0 0 chr1 225126514 225126585 -57067079 + LTR28 LTR ERV1 949 1019 -1 2035 246 69 49 chr1 225126911 225127631 -57066033 - L1ME1 LINE L1 -22 6144 5410 680 266 11 5 chr1 225127656 225127840 -57065824 - MER58A DNA MER1_type -2 222 38 1377 277 81 26 chr1 225127871 225128023 -57065641 - L1ME1 LINE L1 -745 5401 5259 194 0 0 37 chr1 225128023 225128050 -57065614 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 1377 277 81 26 chr1 225128050 225128702 -57064962 - L1ME1 LINE L1 -887 5259 4553 28 0 0 0 chr1 225128702 225128730 -57064934 + AT_rich Low_complexity Low_complexity 1 28 0 845 146 0 0 chr1 225128730 225128860 -57064804 - FRAM SINE Alu -26 150 21 455 177 38 0 chr1 225128868 225128947 -57064717 - AluJ/FLAM SINE Alu -228 84 3 346 313 27 27 chr1 225128948 225129095 -57064569 - L1ME1 LINE L1 -1600 4546 4400 3479 203 67 28 chr1 225129101 225130050 -57063614 - L1MB8 LINE L1 -5 6173 5187 1364 228 45 47 chr1 225130032 225130502 -57063162 - L1MB8 LINE L1 -1308 4838 4370 * 896 231 31 55 chr1 225130505 225130761 -57062903 - AluJo SINE Alu -38 274 25 1988 255 28 39 chr1 225130772 225131525 -57062139 - L1MB8 LINE L1 -1764 4382 3638 1836 79 0 8 chr1 225133093 225133334 -57060330 - AluY SINE Alu -37 274 36 21 57 0 0 chr1 225134523 225134558 -57059106 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr1 225135007 225135042 -57058622 + AT_rich Low_complexity Low_complexity 1 35 0 1875 122 11 7 chr1 225135201 225135487 -57058177 + THE1B LTR MaLR 78 364 0 441 0 0 0 chr1 225136762 225136811 -57056853 + (CA)n Simple_repeat Simple_repeat 2 50 0 1468 224 157 141 chr1 225137505 225138056 -57055608 - L1MD3 LINE L1 -3 7992 7452 250 208 42 104 chr1 225138056 225138152 -57055512 - MLT1F1 LTR MaLR -443 124 35 1468 224 157 141 chr1 225138152 225138522 -57055142 - L1MD3 LINE L1 -543 7452 7090 1397 219 0 24 chr1 225138522 225138810 -57054854 - AluJo SINE Alu -31 281 1 1468 224 157 141 chr1 225138810 225138874 -57054790 - L1MD3 LINE L1 -905 7090 6681 247 223 223 11 chr1 225139810 225139904 -57053760 + MLT1I LTR MaLR 296 409 0 4704 213 45 15 chr1 225140113 225141214 -57052450 + L1MC3 LINE L1 5814 6946 -839 1390 218 39 14 chr1 225141225 225141636 -57052028 + L1MC3 LINE L1 7344 7994 -1 224 151 0 19 chr1 225141693 225141746 -57051918 + (TA)n Simple_repeat Simple_repeat 1 52 0 32 57 0 0 chr1 225141871 225141924 -57051740 + AT_rich Low_complexity Low_complexity 1 53 0 33 85 0 0 chr1 225142271 225142353 -57051311 + AT_rich Low_complexity Low_complexity 1 82 0 21 100 0 0 chr1 225142752 225142822 -57050842 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr1 225143791 225143813 -57049851 + AT_rich Low_complexity Low_complexity 1 22 0 369 235 13 74 chr1 225144644 225144793 -57048871 + MIR SINE MIR 57 196 -66 827 227 5 14 chr1 225144821 225145037 -57048627 - L1MA10 LINE L1 -5 6329 6116 496 156 88 15 chr1 225145042 225145183 -57048481 - MER57A LTR ERV1 0 403 225 1833 162 19 75 chr1 225145216 225145641 -57048023 + MER52A LTR ERV1 1350 1750 -5 3816 140 41 13 chr1 225145646 225146280 -57047384 + MER52A-int LTR ERV1 1 652 -6439 636 275 124 20 chr1 225146653 225147056 -57046608 - HsTC2 DNA Tc2 -89 1809 1189 189 94 0 0 chr1 225147373 225147405 -57046259 + (TC)n Simple_repeat Simple_repeat 1 32 0 27 0 0 0 chr1 225147426 225147453 -57046211 + AT_rich Low_complexity Low_complexity 1 27 0 2318 104 0 0 chr1 225148368 225148675 -57044989 - AluSc SINE Alu 0 309 3 613 185 52 0 chr1 225149606 225149741 -57043923 - L1MB5 LINE L1 -11 6163 6022 1637 163 20 80 chr1 225149743 225150142 -57043522 + THE1C LTR MaLR 1 375 0 2770 224 34 25 chr1 225150142 225150710 -57042954 - L1MB5 LINE L1 -15 6159 5452 454 360 32 28 chr1 225152042 225152156 -57041508 + MIR SINE MIR 13 125 -137 1659 209 8 37 chr1 225152156 225152557 -57041107 + MLT1B LTR MaLR 1 389 -1 454 360 32 28 chr1 225152557 225152689 -57040975 + MIR SINE MIR 125 260 -2 224 204 0 0 chr1 225152814 225152858 -57040806 + (TG)n Simple_repeat Simple_repeat 1 44 0 3272 184 33 31 chr1 225155605 225156335 -57037329 + L1MB1 LINE L1 5438 6168 0 23 33 0 0 chr1 225156379 225156409 -57037255 + AT_rich Low_complexity Low_complexity 1 30 0 33 66 0 0 chr1 225157009 225157070 -57036594 + AT_rich Low_complexity Low_complexity 1 61 0 1857 86 0 16 chr1 225157083 225157327 -57036337 - AluSq SINE Alu -73 240 1 382 287 35 17 chr1 225157551 225157725 -57035939 - L1ME3A LINE L1 -219 5951 5775 426 280 85 21 chr1 225157736 225157969 -57035695 - L1ME3A LINE L1 -432 5730 5485 242 153 174 71 chr1 225158011 225158109 -57035555 - Looper DNA T2_type -43 1515 1408 267 189 349 38 chr1 225158287 225158393 -57035271 + L2 LINE L2 3175 3313 0 198 0 0 0 chr1 225159585 225159607 -57034057 + (TA)n Simple_repeat Simple_repeat 2 23 0 255 161 11 23 chr1 225159729 225159816 -57033848 + (TA)n Simple_repeat Simple_repeat 2 87 0 201 304 39 69 chr1 225159969 225160071 -57033593 - MIR SINE MIR -161 101 3 21 36 0 0 chr1 225160496 225160524 -57033140 + AT_rich Low_complexity Low_complexity 1 28 0 182 267 0 0 chr1 225160597 225160642 -57033022 - MIR SINE MIR 0 262 218 1479 200 51 21 chr1 225161597 225161932 -57031732 - MER66B LTR ERV1 -141 345 1 201 222 12 25 chr1 225163350 225163431 -57030233 + GA-rich Low_complexity Low_complexity 3 82 0 38 51 0 0 chr1 225165191 225165250 -57028414 + AT_rich Low_complexity Low_complexity 1 59 0 2347 46 0 7 chr1 225165361 225165669 -57027995 - AluY SINE Alu 0 306 1 435 289 79 81 chr1 225165727 225166184 -57027480 + L1ME LINE L1 451 906 -5164 21 36 0 0 chr1 225166195 225166223 -57027441 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr1 225166785 225166812 -57026852 + (TA)n Simple_repeat Simple_repeat 2 28 0 1947 127 0 24 chr1 225167072 225167363 -57026301 - AluSx SINE Alu -28 284 1 2257 120 8 22 chr1 225167383 225167750 -57025914 + THE1B LTR MaLR 1 362 -2 226 313 194 49 chr1 225167975 225168259 -57025405 - MLT1H LTR MaLR 0 549 225 3916 57 4 0 chr1 225168931 225169427 -57024237 - L1PA8 LINE L1 -6 6166 5669 5656 120 18 42 chr1 225169815 225171142 -57022522 - L1PA13 LINE L1 -6 6157 4847 42 48 0 0 chr1 225171150 225171213 -57022451 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr1 225172007 225172037 -57021627 + AT_rich Low_complexity Low_complexity 1 30 0 198 354 24 0 chr1 225172323 225172405 -57021259 - L2 LINE L2 -9 3304 3221 6536 201 123 30 chr1 225172496 225174065 -57019599 + MER52A LTR ERV1 39 1753 -2 35 41 0 0 chr1 225175038 225175087 -57018577 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr1 225175262 225175287 -57018377 + AT_rich Low_complexity Low_complexity 1 25 0 2708 135 0 40 chr1 225175423 225175875 -57017789 - MER57B LTR ERV1 0 434 1 643 330 121 39 chr1 225176086 225176962 -57016702 - L2 LINE L2 0 3313 2375 1877 158 41 15 chr1 225176975 225177317 -57016347 - MER41E LTR ERV1 -17 495 145 298 276 31 20 chr1 225177319 225177417 -57016247 + MIR SINE MIR 85 183 -79 815 140 14 14 chr1 225177443 225177586 -57016078 - MER41E LTR ERV1 -369 143 1 1589 276 122 48 chr1 225177693 225178531 -57015133 - L2 LINE L2 -930 2384 1485 21 0 0 0 chr1 225178747 225178768 -57014896 + AT_rich Low_complexity Low_complexity 1 21 0 283 241 58 0 chr1 225179644 225179731 -57013933 - L2 LINE L2 -2619 695 604 357 352 41 20 chr1 225180207 225180403 -57013261 + MIR SINE MIR 2 201 -61 1634 128 11 44 chr1 225180859 225181132 -57012532 - MER4A LTR ERV1 -32 632 369 1143 189 89 95 chr1 225181127 225181486 -57012178 + THE1C LTR MaLR 19 375 0 * 3283 168 3 3 chr1 225181486 225182057 -57011607 + THE1C-int LTR MaLR 1 571 -1080 1145 113 11 17 chr1 225182079 225182256 -57011408 - THE1B LTR MaLR -188 176 1 1425 234 78 40 chr1 225182547 225183048 -57010616 + L1ME2 LINE L1 5593 6112 -52 7707 27 0 3 chr1 225183065 225184749 -57008915 + L1PA4 LINE L1 4471 6150 -5 35 54 0 0 chr1 225184755 225184811 -57008853 + AT_rich Low_complexity Low_complexity 1 56 0 277 325 20 114 chr1 225184845 225185143 -57008521 - L2 LINE L2 -173 3099 2830 324 344 46 20 chr1 225185153 225185348 -57008316 - HAL1 LINE L1 -857 1650 1451 1317 201 112 3 chr1 225185785 225186098 -57007566 - MLT2C1 LTR ERVL -48 349 3 21 0 0 0 chr1 225186127 225186148 -57007516 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1 225188371 225188404 -57005260 + AT_rich Low_complexity Low_complexity 1 33 0 1150 209 150 52 chr1 225188432 225188892 -57004772 + MLT1D LTR MaLR 1 505 0 395 364 115 0 chr1 225189032 225189197 -57004467 + L2 LINE L2 2843 3026 -287 780 213 7 7 chr1 225189239 225189394 -57004270 + MER2 DNA MER2_type 6 160 -185 362 218 200 36 chr1 225189443 225189608 -57004056 + MER2 DNA MER2_type 147 338 -7 501 275 21 111 chr1 225189624 225189904 -57003760 + L2 LINE L2 3057 3311 -2 1244 223 7 36 chr1 225190069 225190370 -57003294 + AluJo SINE Alu 1 292 -20 333 0 0 0 chr1 225190433 225190470 -57003194 + (TA)n Simple_repeat Simple_repeat 2 38 0 2192 125 0 3 chr1 225190473 225190786 -57002878 - AluSx SINE Alu 0 312 1 1987 149 0 0 chr1 225192257 225192545 -57001119 + AluSx SINE Alu 1 288 -24 369 346 13 20 chr1 225193647 225193800 -56999864 - MER5A DNA MER1_type 0 189 38 318 342 136 0 chr1 225194312 225194496 -56999168 + MER115 DNA AcHobo 158 366 -327 554 264 19 0 chr1 225194562 225194721 -56998943 + MER115 DNA AcHobo 510 671 -22 186 219 0 0 chr1 225196093 225196134 -56997530 + MIR SINE MIR 112 152 -110 564 42 0 0 chr1 225197222 225197293 -56996371 + (TG)n Simple_repeat Simple_repeat 1 71 0 4140 47 2 2 chr1 225197605 225198133 -56995531 + L1P LINE L1 4752 5279 -867 183 80 71 54 chr1 225198237 225198349 -56995315 + (TA)n Simple_repeat Simple_repeat 1 114 0 203 88 29 0 chr1 225198383 225198417 -56995247 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 293 197 5 58 chr1 225198453 225198618 -56995046 + (TA)n Simple_repeat Simple_repeat 1 156 -22 189 0 0 0 chr1 225198618 225198639 -56995025 + (TG)n Simple_repeat Simple_repeat 2 22 0 293 197 5 58 chr1 225198639 225198661 -56995003 + (TA)n Simple_repeat Simple_repeat 156 178 0 300 256 52 80 chr1 225198663 225198910 -56994754 - MER34 LTR ERV1 -275 432 11 1226 21 0 0 chr1 225199193 225199334 -56994330 - AluY SINE Alu -12 299 159 5648 138 58 25 chr1 225399334 225400430 -56793234 - MER52C LTR ERV1 -3 1275 143 21 57 0 0 chr1 225400798 225400833 -56792831 + AT_rich Low_complexity Low_complexity 1 35 0 355 295 176 36 chr1 225401277 225401555 -56792109 - L2 LINE L2 -1591 1723 1407 399 259 35 70 chr1 225401618 225401877 -56791787 - L1M4 LINE L1 -2129 4017 3768 14822 94 21 9 chr1 225401979 225404017 -56789647 - HERVL-A2 LTR ERVL -604 5050 2989 1598 106 4 4 chr1 225404011 225404238 -56789426 - HERVL-A2 LTR ERVL -5427 227 1 * 1680 169 105 29 chr1 225404238 225404762 -56788902 - MLT2A2 LTR ERVL 0 554 1 398 314 75 24 chr1 225405505 225405757 -56787907 - L1M4 LINE L1 -3274 2872 2608 1259 173 26 65 chr1 225405757 225406064 -56787600 - AluJb SINE Alu -17 295 1 396 217 81 12 chr1 225406414 225406575 -56787089 - MER53 DNA DNA -11 178 7 296 335 127 17 chr1 225406611 225406623 -56787041 + L2 LINE L2 2722 2731 -582 1802 190 0 3 chr1 225406623 225406934 -56786730 - AluSx SINE Alu 0 312 3 296 335 127 17 chr1 225406934 225407279 -56786385 + L2 LINE L2 2731 3168 -145 231 263 51 76 chr1 225407369 225407487 -56786177 + L2 LINE L2 3196 3310 -3 1596 117 0 0 chr1 225407930 225408144 -56785520 - AluSg/x SINE Alu -17 295 82 1099 177 85 52 chr1 225408477 225408782 -56784882 + MLT1A1 LTR MaLR 1 315 -50 1681 205 88 121 chr1 225408816 225409558 -56784106 + LTR1B LTR ERV1 1 717 -109 29 0 0 0 chr1 225409648 225409677 -56783987 + AT_rich Low_complexity Low_complexity 1 29 0 3960 144 39 29 chr1 225410174 225410873 -56782791 - Tigger2 DNA MER2_type 0 2718 2013 996 157 0 0 chr1 225410869 225411028 -56782636 - Tigger2 DNA MER2_type -1470 1248 1090 * 21 36 0 0 chr1 225411950 225411978 -56781686 + AT_rich Low_complexity Low_complexity 1 28 0 2041 132 0 3 chr1 225412000 225412287 -56781377 + AluSx SINE Alu 13 298 -14 23 0 0 0 chr1 225412361 225412384 -56781280 + AT_rich Low_complexity Low_complexity 1 23 0 312 320 68 0 chr1 225412586 225412689 -56780975 - L2 LINE L2 0 3313 3204 391 338 127 5 chr1 225412701 225412914 -56780750 - MIR SINE MIR -12 250 12 180 0 0 0 chr1 225413024 225413044 -56780620 + (CA)n Simple_repeat Simple_repeat 2 21 0 364 237 70 35 chr1 225414652 225414766 -56778898 - L1ME LINE L1 -5710 360 243 180 0 0 0 chr1 225415082 225415102 -56778562 + (CACTA)n Simple_repeat Simple_repeat 3 22 0 238 320 146 27 chr1 225415319 225415538 -56778126 - MIR SINE MIR -12 250 6 205 306 93 19 chr1 225416067 225416175 -56777489 + MIR SINE MIR 71 186 -76 24 32 0 0 chr1 225416176 225416207 -56777457 + AT_rich Low_complexity Low_complexity 1 31 0 202 279 29 29 chr1 225416208 225416276 -56777388 - L2 LINE L2 -4 3309 3242 24 85 0 0 chr1 225417073 225417132 -56776532 + AT_rich Low_complexity Low_complexity 1 59 0 308 389 7 7 chr1 225419581 225419730 -56773934 - L2 LINE L2 -295 2977 2829 347 296 58 54 chr1 225420093 225420206 -56773458 - MIR SINE MIR -3 259 148 1845 127 87 9 chr1 225420206 225420552 -56773112 - THE1C LTR MaLR -2 373 1 347 296 58 54 chr1 225420552 225420661 -56773003 - MIR SINE MIR -114 148 36 2571 77 0 0 chr1 225420996 225421323 -56772341 + MLT2A1 LTR ERVL 1 327 -117 315 0 0 0 chr1 225421334 225421369 -56772295 + (TG)n Simple_repeat Simple_repeat 2 36 0 942 144 0 0 chr1 225421370 225421550 -56772114 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 304 0 22 chr1 225421557 225421649 -56772015 + L1MC4 LINE L1 6614 6703 -1339 225 178 0 0 chr1 225421653 225421698 -56771966 + (CATA)n Simple_repeat Simple_repeat 2 46 0 273 204 0 0 chr1 225421699 225421753 -56771911 + MLT2A1 LTR ERVL 391 444 0 1831 166 3 53 chr1 225423788 225424143 -56769521 - MER1B DNA MER1_type 0 337 1 29 28 0 0 chr1 225424358 225424394 -56769270 + AT_rich Low_complexity Low_complexity 1 36 0 186 350 17 0 chr1 225425089 225425149 -56768515 + L2 LINE L2 3160 3220 -52 1878 236 39 18 chr1 225426515 225427007 -56766657 + MLT2A1-int LTR ERVL 3 461 -4562 2117 298 63 65 chr1 225427728 225429237 -56764427 + MLT2A1-int LTR ERVL 789 3535 -1950 265 343 36 29 chr1 225429423 225429560 -56764104 + MER70B-int LTR ERVL 2476 2613 -2410 794 148 7 28 chr1 225429666 225429808 -56763856 + AluSg/x SINE Alu 156 294 -18 5873 226 37 17 chr1 225430986 225432464 -56761200 + MER70B-int LTR ERVL 3481 5023 0 2380 197 12 117 chr1 225432470 225433111 -56760553 + MER70B LTR ERVL 2 575 -3 518 309 40 48 chr1 225435707 225435979 -56757685 - LTR16A LTR ERVL 0 450 181 405 317 154 16 chr1 225436074 225436393 -56757271 + LTR33 LTR ERVL 157 519 -2 550 346 92 31 chr1 225436648 225437202 -56756462 + L2 LINE L2 2728 3313 0 186 313 60 24 chr1 225437215 225437298 -56756366 - L3b LINE CR1 -72 1511 1426 21 0 0 0 chr1 225438082 225438103 -56755561 + AT_rich Low_complexity Low_complexity 1 21 0 428 125 0 0 chr1 225438415 225438479 -56755185 + MADE1 DNA Mariner 1 64 -16 1003 233 14 9 chr1 225439972 225440195 -56753469 - MLT1B LTR MaLR -2 388 165 603 221 38 8 chr1 225440538 225440669 -56752995 - MLT1B LTR MaLR -214 151 17 374 145 16 0 chr1 225442999 225443061 -56750603 - MER103 DNA DNA -101 65 3 198 103 0 0 chr1 225445395 225445424 -56748240 + (TA)n Simple_repeat Simple_repeat 2 30 0 2149 105 0 0 chr1 225445458 225445743 -56747921 + AluSg1 SINE Alu 1 285 -24 1266 281 47 28 chr1 225446744 225447211 -56746453 - MLT1D LTR MaLR -29 476 1 2259 37 0 0 chr1 225449455 225449726 -56743938 + L1PA4 LINE L1 5878 6148 -7 2133 74 57 40 chr1 225449839 225450190 -56743474 - L1MA2 LINE L1 0 6304 5948 12548 174 54 20 chr1 225449937 225453381 -56740283 - L1MA3 LINE L1 -97 7627 4065 2419 236 52 0 chr1 225453392 225453875 -56739789 - L1MA3 LINE L1 -6959 606 87 213 65 0 0 chr1 225453875 225453906 -56739758 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2419 236 52 0 chr1 225453906 225453995 -56739669 - L1MA3 LINE L1 -7478 87 4 824 234 51 43 chr1 225454043 225454299 -56739365 + MLT1E LTR MaLR 10 267 -326 1571 229 103 28 chr1 225454313 225454807 -56738857 - LTR55 LTR ERV -17 531 1 806 282 54 22 chr1 225454807 225455084 -56738580 + MLT1E LTR MaLR 266 551 -16 2053 171 34 35 chr1 225455985 225456534 -56737130 + MLT2A2 LTR ERVL 1 553 -1 1715 291 47 26 chr1 225457229 225457807 -56735857 + MLT1E LTR MaLR 1 590 -3 690 313 20 0 chr1 225457862 225458063 -56735601 - MER58A DNA MER1_type -16 208 4 794 283 119 41 chr1 225458131 225458894 -56734770 + L1M4 LINE L1 2555 3377 -2769 312 294 147 7 chr1 225459153 225459425 -56734239 + L1MEc LINE L1 1237 1546 -5279 3564 219 38 8 chr1 225459435 225460124 -56733540 - L1 LINE L1 -1185 4961 4241 270 0 0 0 chr1 225460124 225460154 -56733510 + (TG)n Simple_repeat Simple_repeat 2 31 0 3564 219 38 8 chr1 225460154 225460313 -56733351 - L1 LINE L1 -1905 4241 4088 265 191 16 0 chr1 225460312 225460375 -56733289 + L1MA9 LINE L1 4970 5033 -1113 * 1620 203 89 115 chr1 225460343 225461013 -56732651 + L1MA9 LINE L1 5652 6298 -14 334 267 52 96 chr1 225461027 225461218 -56732446 + L1MEc LINE L1 1401 1580 -4962 2433 201 39 50 chr1 225461218 225461776 -56731888 + MLT2B3 LTR ERVL 1 552 -2 334 267 52 96 chr1 225461776 225461835 -56731829 + L1MEc LINE L1 1580 1640 -4902 24 0 0 0 chr1 225462429 225462453 -56731211 + AT_rich Low_complexity Low_complexity 1 24 0 228 185 15 15 chr1 225462727 225462754 -56730910 + (TA)n Simple_repeat Simple_repeat 1 27 -38 2190 177 52 5 chr1 225462754 225463161 -56730503 + MSTB LTR MaLR 1 426 0 228 185 15 15 chr1 225463161 225463198 -56730466 + (TA)n Simple_repeat Simple_repeat 26 65 0 21 0 0 0 chr1 225463316 225463337 -56730327 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr1 225463771 225463810 -56729854 + AT_rich Low_complexity Low_complexity 1 39 0 542 288 13 17 chr1 225464562 225464904 -56728760 + AluYa5 SINE Alu 1 341 0 8700 178 21 13 chr1 225464904 225465441 -56728223 + MSTB-int LTR MaLR 1 533 -1118 263 49 24 0 chr1 225465441 225465482 -56728182 + (CAA)n Simple_repeat Simple_repeat 3 44 0 8700 178 21 13 chr1 225465482 225466583 -56727081 + MSTB-int LTR MaLR 533 1651 0 1380 215 111 28 chr1 225466583 225466978 -56726686 + MSTB LTR MaLR 1 428 0 28 48 0 0 chr1 225467133 225467175 -56726489 + AT_rich Low_complexity Low_complexity 1 42 0 2086 90 6 72 chr1 225467431 225467764 -56725900 + AluY SINE Alu 1 311 0 30 27 0 0 chr1 225468074 225468111 -56725553 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 225469346 225469381 -56724283 + AT_rich Low_complexity Low_complexity 1 35 0 819 288 65 37 chr1 225469510 225470215 -56723449 + L1ME LINE L1 839 1563 -4833 1789 223 76 42 chr1 225470218 225470580 -56723084 + L1ME LINE L1 4642 4990 -1245 198 0 0 0 chr1 225470580 225470602 -56723062 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 1789 223 76 42 chr1 225470602 225471145 -56722519 + L1ME LINE L1 4990 5580 -655 288 0 0 0 chr1 225471149 225471181 -56722483 + (TA)n Simple_repeat Simple_repeat 2 33 0 186 43 0 0 chr1 225471357 225471380 -56722284 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 858 155 0 0 chr1 225471386 225471515 -56722149 - AluJb SINE Alu -27 285 157 395 385 90 14 chr1 225472512 225473044 -56720620 + L2 LINE L2 2734 3313 0 246 81 0 0 chr1 225473322 225473359 -56720305 + (T)n Simple_repeat Simple_repeat 1 37 0 29819 24 0 0 chr1 225473361 225477688 -56715976 - L1HS LINE L1 -3 6152 1826 1199 208 88 50 chr1 225477851 225478169 -56715495 - MER58B DNA MER1_type 0 341 12 310 182 212 40 chr1 225480082 225480181 -56713483 + L2 LINE L2 3193 3308 -5 331 366 136 4 chr1 225480691 225480970 -56712694 - L2 LINE L2 -602 2712 2397 642 271 90 38 chr1 225480976 225481408 -56712256 + MLT1H LTR MaLR 1 516 -33 1099 241 41 28 chr1 225481489 225481779 -56711885 - MLT1E LTR MaLR -30 563 270 756 286 56 28 chr1 225481843 225482095 -56711569 - MLT1E LTR MaLR -289 304 46 258 346 50 0 chr1 225482178 225482279 -56711385 + MIR SINE MIR 6 111 -151 1594 96 4 9 chr1 225482860 225483090 -56710574 + HERVL-A2 LTR ERVL 5426 5654 0 1915 171 43 39 chr1 225483090 225483381 -56710283 + MLT2A2 LTR ERVL 1 294 -260 7356 41 12 0 chr1 225483381 225484266 -56709398 - MER11D LTR ERVK -1 896 1 1915 171 43 39 chr1 225484266 225484526 -56709138 + MLT2A2 LTR ERVL 294 552 -2 8573 60 2 4 chr1 225485624 225486696 -56706968 - MER11C LTR ERVK 0 1071 2 2477 65 0 0 chr1 225487982 225488288 -56705376 + AluY SINE Alu 1 306 -5 1885 117 3 72 chr1 225488564 225488898 -56704766 + AluSq SINE Alu 3 313 0 487 314 108 27 chr1 225488985 225489208 -56704456 - MIR SINE MIR -21 241 1 1951 103 22 4 chr1 225490036 225490308 -56703356 - AluSc SINE Alu -11 298 22 24 85 0 0 chr1 225490420 225490479 -56703185 + AT_rich Low_complexity Low_complexity 1 59 0 272 160 4 0 chr1 225490924 225490973 -56702691 - L1M2 LINE L1 -533 5758 5708 * 1330 185 31 77 chr1 225490972 225491297 -56702367 + L1MA9 LINE L1 5972 6281 -31 1827 173 31 0 chr1 225492465 225492783 -56700881 + MER2 DNA MER2_type 4 331 -14 21 0 0 0 chr1 225492844 225492865 -56700799 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 225493084 225493115 -56700549 + AT_rich Low_complexity Low_complexity 1 31 0 1732 217 42 28 chr1 225493229 225493680 -56699984 - MLT1C LTR MaLR 0 467 1 24 67 0 0 chr1 225494534 225494579 -56699085 + AT_rich Low_complexity Low_complexity 1 45 0 207 224 37 8 chr1 225494666 225494800 -56698864 + (TA)n Simple_repeat Simple_repeat 2 139 0 705 240 69 21 chr1 225495447 225495621 -56698043 - MER46C DNA MER2_type -2 336 147 273 29 0 0 chr1 225495621 225495655 -56698009 + (CA)n Simple_repeat Simple_repeat 1 34 0 705 240 69 21 chr1 225495655 225495713 -56697951 - MER46C DNA MER2_type -191 147 93 1120 222 59 41 chr1 225495855 225496193 -56697471 - MER2 DNA MER2_type 0 344 1 31 68 0 0 chr1 225496336 225496395 -56697269 + AT_rich Low_complexity Low_complexity 1 59 0 389 245 39 91 chr1 225496415 225496623 -56697041 + L1MC4 LINE L1 7189 7385 -657 458 129 8 1 chr1 225496624 225496864 -56696800 + AluSx SINE Alu 19 294 -16 374 289 136 43 chr1 225496888 225497279 -56696385 + L1MC4 LINE L1 7423 7849 -193 29 28 0 0 chr1 225497516 225497552 -56696112 + AT_rich Low_complexity Low_complexity 1 36 0 207 253 96 103 chr1 225497873 225498019 -56695645 - L2 LINE L2 0 3313 3169 475 343 107 28 chr1 225498720 225499215 -56694449 - L2 LINE L2 -1309 2005 1472 285 271 90 52 chr1 225500219 225500374 -56693290 + MLT1J LTR MaLR 2 162 -349 562 328 57 30 chr1 225500485 225500890 -56692774 + MLT1J2 LTR MaLR 31 446 -4 22 0 0 0 chr1 225501060 225501082 -56692582 + AT_rich Low_complexity Low_complexity 1 22 0 364 152 15 15 chr1 225501127 225501193 -56692471 - MER5A DNA MER1_type 0 189 124 21 0 0 0 chr1 225502329 225502350 -56691314 + AT_rich Low_complexity Low_complexity 1 21 0 262 329 30 30 chr1 225502616 225502783 -56690881 - L2 LINE L2 -1 3312 3146 552 339 97 32 chr1 225502860 225503303 -56690361 - L2 LINE L2 -15 3298 2827 1261 244 8 78 chr1 225503303 225503700 -56689964 + MLT1A2 LTR MaLR 1 369 -5 2034 296 71 57 chr1 225503715 225504698 -56688966 - L2 LINE L2 -494 2820 1824 284 234 170 32 chr1 225504704 225504798 -56688866 + L1M4b LINE L1 7 113 -6746 1591 229 66 52 chr1 225504847 225505501 -56688163 + L1M4b LINE L1 1328 1990 -4865 26 30 0 0 chr1 225505715 225505748 -56687916 + AT_rich Low_complexity Low_complexity 1 33 0 6124 53 3 1 chr1 225505748 225506514 -56687150 - L1PA5 LINE L1 0 6154 5388 2099 233 13 21 chr1 225508320 225508796 -56684868 - MER70A LTR ERVL 0 472 1 301 322 14 7 chr1 225509588 225509731 -56683933 - HERVL LTR ERVL -3000 2654 2511 2249 217 55 35 chr1 225509784 225509819 -56683845 - MLT2B3 LTR ERVL 0 554 521 693 56 0 0 chr1 225509819 225509909 -56683755 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2249 217 55 35 chr1 225509909 225510416 -56683248 - MLT2B3 LTR ERVL -33 521 1 456 222 42 60 chr1 225511498 225511665 -56681999 + L1MB8 LINE L1 6015 6178 0 268 341 57 0 chr1 225511669 225511792 -56681872 - L2 LINE L2 -1487 1827 1698 312 378 82 31 chr1 225512142 225512433 -56681231 + L2 LINE L2 2477 2782 -532 190 451 49 0 chr1 225512685 225512827 -56680837 + L2 LINE L2 3122 3270 -2 1710 244 99 12 chr1 225512987 225513488 -56680176 + MER34 LTR ERV1 11 542 0 532 277 71 76 chr1 225513936 225514421 -56679243 - MLT1G1 LTR MaLR -106 436 3 21 71 0 0 chr1 225514671 225514713 -56678951 + AT_rich Low_complexity Low_complexity 1 42 0 355 317 20 55 chr1 225514726 225514928 -56678736 - MIR SINE MIR -35 227 33 44 63 0 0 chr1 225516277 225516356 -56677308 + AT_rich Low_complexity Low_complexity 1 79 0 546 224 178 14 chr1 225516787 225517001 -56676663 + MLT1E1 LTR MaLR 1 249 -405 268 179 77 27 chr1 225517285 225517391 -56676273 + MLT1E1 LTR MaLR 108 259 -395 220 313 70 9 chr1 225518832 225518947 -56674717 + L3 LINE CR1 1301 1422 -155 247 197 26 26 chr1 225518980 225519056 -56674608 - L1MD3 LINE L1 -1794 6201 6126 2298 269 48 23 chr1 225519057 225520158 -56673506 - L1ME LINE L1 -675 5491 3804 28 0 0 0 chr1 225520343 225520371 -56673293 + AT_rich Low_complexity Low_complexity 1 28 0 217 225 0 0 chr1 225520425 225520465 -56673199 + (CA)n Simple_repeat Simple_repeat 1 40 0 598 272 68 32 chr1 225520587 225520846 -56672818 - MLT1J2 LTR MaLR -167 279 1 25 75 0 0 chr1 225521315 225521368 -56672296 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr1 225521678 225521699 -56671965 + AT_rich Low_complexity Low_complexity 1 21 0 669 12 0 0 chr1 225522030 225522111 -56671553 + L1PA2 LINE L1 6074 6154 -1 1982 122 0 17 chr1 225522915 225523210 -56670454 - AluSq SINE Alu -23 290 1 1472 267 45 46 chr1 225523527 225524075 -56669589 + MLT1H1 LTR MaLR 1 539 -3 23 54 0 0 chr1 225524973 225525010 -56668654 + AT_rich Low_complexity Low_complexity 1 37 0 275 233 44 0 chr1 225525289 225525379 -56668285 - L1MC4 LINE L1 -1334 6708 6615 291 215 0 0 chr1 225525380 225525445 -56668219 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 886 277 52 64 chr1 225526168 225526511 -56667153 - MLT1J LTR MaLR 0 511 174 2008 192 38 8 chr1 225526511 225526906 -56666758 - LTR57 LTR ERVL 0 411 5 886 277 52 64 chr1 225526906 225527079 -56666585 - MLT1J LTR MaLR -337 174 1 3839 186 97 16 chr1 225527531 225528482 -56665182 - L1MB3 LINE L1 -1 6182 5155 1740 202 3 0 chr1 225528957 225529264 -56664400 + AluJo SINE Alu 3 310 -2 2049 150 111 5 chr1 225530024 225530411 -56663253 + MSTA LTR MaLR 1 428 0 2844 6 0 0 chr1 225530420 225530753 -56662911 + AluYa5 SINE Alu 1 333 0 24 0 0 0 chr1 225531158 225531182 -56662482 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr1 225531593 225531622 -56662042 + AT_rich Low_complexity Low_complexity 1 29 0 352 345 74 35 chr1 225532348 225532551 -56661113 + MLT1I LTR MaLR 58 268 -141 884 202 78 112 chr1 225532709 225533119 -56660545 - MSTD LTR MaLR 0 396 1 240 222 16 16 chr1 225533456 225533519 -56660145 + MLT1I-int LTR MaLR 9 71 -1300 262 318 16 0 chr1 225534286 225534349 -56659315 + LTR67 LTR ERVL 127 190 -367 303 170 9 123 chr1 225534552 225534658 -56659006 + L1MC4 LINE L1 6610 6703 -1339 22 0 0 0 chr1 225535099 225535121 -56658543 + AT_rich Low_complexity Low_complexity 1 22 0 2227 199 23 94 chr1 225535371 225535926 -56657738 - LTR9 LTR ERV1 0 612 109 1964 120 7 7 chr1 225535926 225536257 -56657407 - AluSx SINE Alu 0 331 1 2227 199 23 94 chr1 225536257 225536359 -56657305 - LTR9 LTR ERV1 -503 109 1 444 278 119 54 chr1 225536451 225536746 -56656918 - HAL1 LINE L1 -546 1961 1648 242 219 61 104 chr1 225537094 225537258 -56656406 - HAL1 LINE L1 -2283 224 68 772 320 80 65 chr1 225537614 225538499 -56655165 + L2 LINE L2 1947 2844 -470 461 308 59 47 chr1 225538498 225538751 -56654913 + MIR SINE MIR 7 262 0 * 926 250 45 60 chr1 225539251 225539699 -56653965 + LTR37B LTR ERV1 8 448 -20 23 0 0 0 chr1 225539847 225539870 -56653794 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 225541409 225541434 -56652230 + AT_rich Low_complexity Low_complexity 1 25 0 709 264 31 35 chr1 225543424 225543651 -56650013 - MIR SINE MIR -10 252 27 1632 253 132 25 chr1 225544698 225545169 -56648495 - MLT2F LTR ERVL -128 535 15 4022 261 58 32 chr1 225545169 225546436 -56647228 - ERVL-F LTR ERVL -19 5745 4446 * 4645 257 45 13 chr1 225546426 225547618 -56646046 - ERVL-F LTR ERVL -1494 4270 3041 246 241 17 0 chr1 225548170 225548228 -56645436 + GA-rich Low_complexity Low_complexity 4 62 0 24 32 0 0 chr1 225548334 225548365 -56645299 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr1 225549347 225549377 -56644287 + AT_rich Low_complexity Low_complexity 1 30 0 1720 255 110 32 chr1 225549545 225550283 -56643381 - L1ME3A LINE L1 -86 6084 5290 5653 186 100 109 chr1 225550288 225552195 -56641469 - L1MA5 LINE L1 0 7002 5080 1453 126 91 49 chr1 225552195 225552458 -56641206 - AluSx SINE Alu 0 312 39 2048 148 16 0 chr1 225552458 225552775 -56640889 - MER1A DNA MER1_type -27 502 181 5653 186 100 109 chr1 225552775 225553155 -56640509 - L1MA5 LINE L1 -1921 5081 4699 296 178 0 0 chr1 225553155 225553200 -56640464 - MER1A DNA MER1_type -340 187 143 5653 186 100 109 chr1 225553200 225554739 -56638925 - L1MA5 LINE L1 -2303 4699 2853 4256 216 57 11 chr1 225554734 225555857 -56637807 - L1MA5 LINE L1 -4231 2618 1444 * 21 0 0 0 chr1 225556137 225556158 -56637506 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 225556240 225556265 -56637399 + AT_rich Low_complexity Low_complexity 1 25 0 242 305 60 80 chr1 225557288 225557439 -56636225 - L3 LINE CR1 -53 1524 1377 22 56 0 0 chr1 225558284 225558320 -56635344 + AT_rich Low_complexity Low_complexity 1 36 0 2143 112 3 0 chr1 225558766 225559060 -56634604 - AluSx SINE Alu -17 295 1 181 287 23 69 chr1 225560373 225560460 -56633204 - L2 LINE L2 -2 3270 3188 23 0 0 0 chr1 225561002 225561025 -56632639 + AT_rich Low_complexity Low_complexity 1 23 0 2521 20 0 7 chr1 225561084 225561380 -56632284 - L1PA3 LINE L1 -990 5156 4861 7626 28 1 0 chr1 225561380 225562375 -56631289 + L1PA3 LINE L1 5159 6154 -1 210 307 0 27 chr1 225562416 225562491 -56631173 + L2 LINE L2 3229 3301 -12 346 295 83 77 chr1 225563372 225563606 -56630058 - MIR SINE MIR -1 261 16 208 343 131 34 chr1 225564125 225564475 -56629189 + L2 LINE L2 2078 2461 -853 24 0 0 0 chr1 225565226 225565250 -56628414 + AT_rich Low_complexity Low_complexity 1 24 0 3394 251 101 83 chr1 225566262 225569293 -56624371 - L1MEc LINE L1 -1353 4862 1615 498 253 120 0 chr1 225569293 225569451 -56624213 - MER58C DNA MER1_type -38 177 1 3394 251 101 83 chr1 225569451 225571059 -56622605 - L1MEc LINE L1 -4600 1615 37 1596 230 54 48 chr1 225571536 225572076 -56621588 - LTR55 LTR ERV -5 543 1 1428 224 30 22 chr1 225574531 225574893 -56618771 + MLT1A1 LTR MaLR 1 365 0 666 180 16 0 chr1 225574924 225575052 -56618612 + MER7A DNA MER2_type 1 128 -218 1019 209 54 137 chr1 225575874 225576279 -56617385 - LTR47B LTR ERVL 0 443 83 7301 37 2 2 chr1 225576279 225577392 -56616272 + L1PA4 LINE L1 5042 6154 -1 1019 209 54 137 chr1 225577392 225577469 -56616195 - LTR47B LTR ERVL -360 83 1 274 325 49 8 chr1 225577547 225577670 -56615994 + MIR SINE MIR 61 188 -74 301 186 0 0 chr1 225577748 225577807 -56615857 + L1MA3 LINE L1 6234 6292 -13 384 71 0 0 chr1 225628504 225628560 -56565104 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 259 171 57 11 chr1 225628561 225628649 -56565015 - L1M3c LINE L1 -4808 2290 2199 418 155 0 0 chr1 225628656 225628714 -56564950 - MER8 DNA MER2_type 0 239 182 774 281 0 6 chr1 225628759 225628930 -56564734 - MER8 DNA MER2_type -62 177 8 665 290 88 78 chr1 225628942 225629139 -56564525 - L1M3c LINE L1 -4997 2171 1977 246 62 0 0 chr1 225629139 225629171 -56564493 + (TG)n Simple_repeat Simple_repeat 2 33 0 665 290 88 78 chr1 225629171 225629669 -56563995 - L1M3c LINE L1 -5191 1977 1469 4039 191 19 23 chr1 225629799 225630594 -56563070 - MER54B LTR ERVL -1 792 1 508 225 72 36 chr1 225630936 225631074 -56562590 - MER54B LTR ERVL -510 283 141 324 346 33 52 chr1 225631151 225631304 -56562360 - L1M3c LINE L1 -5991 1107 958 372 251 5 113 chr1 225631615 225631810 -56561854 + L2 LINE L2 2614 2787 -527 204 97 0 0 chr1 225631937 225631968 -56561696 + (CA)n Simple_repeat Simple_repeat 2 32 0 2136 105 0 20 chr1 225632951 225633256 -56560408 - AluSq SINE Alu -14 299 1 21 82 0 0 chr1 225634073 225634122 -56559542 + AT_rich Low_complexity Low_complexity 1 49 0 1832 149 7 3 chr1 225635170 225635452 -56558212 - AluSg SINE Alu -27 283 1 24 0 0 0 chr1 225635979 225636003 -56557661 + AT_rich Low_complexity Low_complexity 1 24 0 1166 49 0 0 chr1 225636004 225636147 -56557517 - L1PA5 LINE L1 -8 6146 6004 258 211 6 50 chr1 225636242 225636403 -56557261 + GA-rich Low_complexity Low_complexity 1 154 0 38177 72 5 7 chr1 225636540 225638017 -56555647 - L1PA5 LINE L1 -154 6000 4522 2296 29 7 4 chr1 225638017 225638289 -56555375 - AluY SINE Alu -1 310 38 38177 72 5 7 chr1 225638289 225642532 -56551132 - L1PA5 LINE L1 -1632 4522 289 1793 121 4 4 chr1 225642532 225642781 -56550883 + AluSg SINE Alu 44 292 -18 1183 233 148 9 chr1 225643096 225643264 -56550400 + MLT1F LTR MaLR 19 162 -380 348 43 0 0 chr1 225643264 225643310 -56550354 + (TC)n Simple_repeat Simple_repeat 2 47 0 1183 233 148 9 chr1 225643310 225643605 -56550059 + MLT1F LTR MaLR 162 534 -8 226 209 0 0 chr1 225643797 225643840 -56549824 + (CA)n Simple_repeat Simple_repeat 1 43 0 225 159 0 0 chr1 225644373 225644417 -56549247 + GA-rich Low_complexity Low_complexity 2 45 0 207 100 0 0 chr1 225644410 225644440 -56549224 + (GGGA)n Simple_repeat Simple_repeat 4 33 0 * 810 136 5 33 chr1 225644553 225644737 -56548927 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 371 21 42 0 chr1 225644737 225644785 -56548879 + (GAAA)n Simple_repeat Simple_repeat 4 53 0 473 284 11 40 chr1 225646382 225646558 -56547106 - L2 LINE L2 -1 3312 3142 2167 301 92 35 chr1 225646793 225648039 -56545625 - L2 LINE L2 0 3313 1984 402 244 11 0 chr1 225648042 225648132 -56545532 + L2 LINE L2 1871 1961 -1353 816 241 48 78 chr1 225649021 225649457 -56544207 + HAL1b LINE L1 141 563 -785 1326 263 85 27 chr1 225649925 225650373 -56543291 - MER110 LTR ERV1 0 491 18 2231 303 53 57 chr1 225650513 225651993 -56541671 - MER110-int LTR ERV1 -6 4641 3167 379 289 23 23 chr1 225652037 225652165 -56541499 - L2 LINE L2 -3171 143 16 189 215 0 92 chr1 225652262 225652306 -56541358 - MIR SINE MIR -48 214 176 2087 233 42 57 chr1 225652306 225652920 -56540744 - MER77 LTR ERV1 0 605 1 189 215 0 92 chr1 225652920 225652940 -56540724 - MIR SINE MIR -86 176 156 328 223 16 66 chr1 225652945 225653066 -56540598 + Charlie4 DNA MER1_type 15 129 -1832 689 151 104 10 chr1 225653225 225653466 -56540198 + LTR37A LTR ERV1 198 426 0 6722 72 10 79 chr1 225653551 225654392 -56539272 - L1PA8 LINE L1 -1 6171 5356 2109 137 0 0 chr1 225654392 225654698 -56538966 + AluSp SINE Alu 2 307 -6 6722 72 10 79 chr1 225654698 225654832 -56538832 - L1PA8 LINE L1 -816 5356 5214 24 77 0 0 chr1 225654961 225655013 -56538651 + AT_rich Low_complexity Low_complexity 1 52 0 1710 325 112 19 chr1 225655248 225656058 -56537606 - L2 LINE L2 -1230 2084 1199 487 265 93 99 chr1 225656070 225656402 -56537262 - MLT1I LTR MaLR -10 399 70 508 357 49 20 chr1 225656480 225656785 -56536879 - L2 LINE L2 -2170 1144 831 543 253 78 20 chr1 225656787 225657143 -56536521 + LTR37A LTR ERV1 13 426 0 1885 292 55 38 chr1 225657143 225657889 -56535775 - L2 LINE L2 -2461 853 95 646 308 6 12 chr1 225658015 225658184 -56535480 - MER5B DNA MER1_type -10 168 1 1481 156 83 64 chr1 225658278 225658638 -56535026 - THE1C LTR MaLR 0 375 9 285 308 0 42 chr1 225658900 225659020 -56534644 + HERVL LTR ERVL 1704 1818 -3836 1660 222 43 8 chr1 225659254 225659650 -56534014 - MLT1C LTR MaLR -2 465 56 360 253 164 45 chr1 225660172 225660368 -56533296 - MLT1H LTR MaLR 0 549 332 270 0 0 0 chr1 225660602 225660632 -56533032 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 594 143 0 0 chr1 225661878 225661969 -56531695 + AluSx SINE Alu 1 91 -221 1255 127 66 5 chr1 225662061 225662258 -56531406 + AluSx SINE Alu 94 302 -10 2124 101 4 0 chr1 225662651 225662927 -56530737 + AluSp SINE Alu 3 279 -34 261 0 0 0 chr1 225662941 225662970 -56530694 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 210 318 145 62 chr1 225663556 225663880 -56529784 - L2 LINE L2 -517 2797 2447 2013 105 72 6 chr1 225664552 225664916 -56528748 - LTR7 LTR ERV1 -2 448 1 30 27 0 0 chr1 225665413 225665450 -56528214 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr1 225665902 225665931 -56527733 + AT_rich Low_complexity Low_complexity 1 29 0 3842 45 43 0 chr1 225666250 225666720 -56526944 - LTR2B LTR ERV1 0 490 1 1039 249 106 61 chr1 225667839 225668217 -56525447 - LTR41 LTR ERVL -6 767 373 1159 252 68 7 chr1 225668336 225668630 -56525034 - L1MDa LINE L1 -6221 319 8 42877 31 21 1 chr1 225668678 225674709 -56518955 - L1HS LINE L1 0 6155 1 207 337 0 21 chr1 225674794 225674889 -56518775 + CT-rich Low_complexity Low_complexity 2 94 0 25 0 0 0 chr1 225675098 225675123 -56518541 + AT_rich Low_complexity Low_complexity 1 25 0 26 64 0 0 chr1 225675382 225675429 -56518235 + AT_rich Low_complexity Low_complexity 1 47 0 186 326 0 0 chr1 225676741 225676790 -56516874 - L2 LINE L2 -10 3303 3255 7401 160 24 14 chr1 225678414 225679745 -56513919 + Tigger1 DNA MER2_type 1 1344 -1074 2366 80 0 19 chr1 225680090 225680401 -56513263 - AluY SINE Alu -6 305 1 4136 177 16 1 chr1 225680433 225681132 -56512532 - MER6 DNA MER2_type -156 709 1 3298 114 40 37 chr1 225681290 225681859 -56511805 - Tigger2 DNA MER2_type -1 2717 2147 8463 72 12 6 chr1 225681976 225683080 -56510584 + HERVL-A1 LTR ERVL 4545 5654 0 3289 82 2 20 chr1 225683080 225683532 -56510132 + MLT2A1 LTR ERVL 1 444 0 471 268 40 27 chr1 225683616 225683840 -56509824 - HAL1 LINE L1 -822 1685 1459 6015 191 40 31 chr1 225684203 225685599 -56508065 + L1MA4 LINE L1 3711 5119 -1027 23 68 0 0 chr1 225686601 225686645 -56507019 + AT_rich Low_complexity Low_complexity 1 44 0 2416 138 29 65 chr1 225687342 225687898 -56505766 + L1MA4 LINE L1 5757 6292 -8 200 345 182 6 chr1 225688878 225689043 -56504621 + L2 LINE L2 2867 3060 -212 949 80 0 14 chr1 225691595 225691733 -56501931 + L1PA6 LINE L1 6017 6152 -2 26 50 0 0 chr1 225692132 225692172 -56501492 + AT_rich Low_complexity Low_complexity 1 40 0 22 103 0 0 chr1 225692191 225692269 -56501395 + AT_rich Low_complexity Low_complexity 1 78 0 1718 182 39 26 chr1 225692620 225693005 -56500659 + MLT1B LTR MaLR 1 390 0 554 264 11 52 chr1 225693078 225693252 -56500412 + MIR SINE MIR 21 187 -75 33 56 0 0 chr1 225693253 225693307 -56500357 + AT_rich Low_complexity Low_complexity 1 54 0 568 324 53 55 chr1 225693440 225693855 -56499809 - L2 LINE L2 -310 3003 2589 195 204 0 0 chr1 225693932 225693986 -56499678 + GA-rich Low_complexity Low_complexity 1 54 0 217 0 0 57 chr1 225694071 225694106 -56499558 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 31 0 0 0 chr1 225695276 225695307 -56498357 + AT_rich Low_complexity Low_complexity 1 31 0 711 217 40 20 chr1 225695621 225695791 -56497873 - L1ME1 LINE L1 -33 6131 5962 242 77 103 0 chr1 225695876 225695915 -56497749 - L1M4 LINE L1 -3787 2359 2317 21357 169 24 23 chr1 225695962 225697891 -56495773 + L1M1 LINE L1 16 1941 -5624 887 114 0 0 chr1 225697891 225698014 -56495650 + FLAM_C SINE Alu 1 123 -10 21357 169 24 23 chr1 225698014 225700138 -56493526 + L1M1 LINE L1 1941 4081 -3484 2323 115 39 8 chr1 225700138 225700502 -56493162 - THE1C LTR MaLR 0 375 1 21357 169 24 23 chr1 225700502 225702010 -56491654 + L1M1 LINE L1 4081 5586 -1979 5159 151 59 5 chr1 225702230 225703114 -56490550 - Tigger2 DNA MER2_type -1786 932 1 887 264 79 27 chr1 225703213 225703570 -56490094 - MLT2D LTR ERVL 0 414 48 433 340 60 33 chr1 225703637 225703969 -56489695 - ERVL LTR ERVL -5072 692 352 951 243 63 118 chr1 225704271 225705031 -56488633 - LTR41 LTR ERVL -6 767 50 1400 231 22 3 chr1 225705060 225705419 -56488245 - L1 LINE L1 -956 5190 4825 352 198 0 12 chr1 225705637 225705718 -56487946 - MER116 DNA Mariner 0 80 1 32 0 0 0 chr1 225705927 225705959 -56487705 + AT_rich Low_complexity Low_complexity 1 32 0 352 231 44 0 chr1 225707201 225707292 -56486372 - MER58A DNA MER1_type 0 137 43 1987 158 26 5 chr1 225707292 225707677 -56485987 + L1M4 LINE L1 4404 4796 -1350 259 339 132 0 chr1 225707771 225707892 -56485772 - L2 LINE L2 0 3272 3136 322 100 33 0 chr1 225708010 225708070 -56485594 + (CA)n Simple_repeat Simple_repeat 1 62 0 25 65 0 0 chr1 225708252 225708298 -56485366 + AT_rich Low_complexity Low_complexity 1 46 0 216 294 54 54 chr1 225708353 225708445 -56485219 - L2 LINE L2 -1 3271 3180 515 271 106 21 chr1 225709214 225709402 -56484262 - MIR SINE MIR -57 205 2 317 302 58 14 chr1 225709551 225709690 -56483974 + MIR SINE MIR 65 209 -53 351 267 64 102 chr1 225709713 225710144 -56483520 - MLT1H LTR MaLR -19 530 23 5146 187 81 43 chr1 225710574 225712439 -56481225 - L1MA9 LINE L1 -407 5905 3951 21 36 0 0 chr1 225712752 225712780 -56480884 + AT_rich Low_complexity Low_complexity 1 28 0 306 341 46 0 chr1 225713468 225713641 -56480023 + L1ME4a LINE L1 5732 5912 -209 2793 111 8 0 chr1 225713929 225714325 -56479339 - MER57B LTR ERV1 0 434 36 1515 119 119 15 chr1 225714348 225714608 -56479056 - MER57B-int LTR ERV1 -1 7536 7250 238 57 29 0 chr1 225714637 225714672 -56478992 + L1P LINE L1 5233 5268 -878 1397 160 0 0 chr1 225714834 225715046 -56478618 - AluSx SINE Alu -100 212 1 4250 39 0 0 chr1 225715345 225715893 -56477771 + L1PA3 LINE L1 5634 6181 0 614 130 24 49 chr1 225715895 225716018 -56477646 - LTR54B LTR ERV1 -374 124 5 2954 102 0 0 chr1 225716018 225716420 -56477244 - MER57B-int LTR ERV1 -387 7150 6749 327 203 0 0 chr1 225716412 225716471 -56477193 - MER57B-int LTR ERV1 -1279 6537 6479 * 1266 136 4 53 chr1 225716485 225716713 -56476951 + MER57-int LTR ERV1 5694 5910 -1627 * 2046 103 38 16 chr1 225716710 225717029 -56476635 - MER57B-int LTR ERV1 -1847 5690 5365 1228 128 64 25 chr1 225717027 225717231 -56476433 - MER57B-int LTR ERV1 -5980 1557 1346 * 1291 109 0 0 chr1 225717225 225717400 -56476264 - MER57B-int LTR ERV1 -6570 967 793 * 4303 143 23 3 chr1 225717398 225718062 -56475602 - MER57B-int LTR ERV1 -6860 677 1 2285 144 74 0 chr1 225718062 225718466 -56475198 - MER57B LTR ERV1 0 434 1 3837 156 32 31 chr1 225718648 225719986 -56473678 + L1MA3 LINE L1 4468 5801 -504 238 217 54 22 chr1 225720000 225720092 -56473572 - L1MCa LINE L1 -4855 1571 1477 191 36 36 0 chr1 225720109 225720137 -56473527 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3004 120 14 0 chr1 225720147 225720632 -56473032 + L1MA3 LINE L1 5814 6305 0 556 239 80 22 chr1 225720647 225720961 -56472703 - L1MEc LINE L1 -4007 2389 2058 697 223 7 14 chr1 225720962 225721110 -56472554 - MER58B DNA MER1_type 0 341 195 810 284 89 20 chr1 225721147 225722284 -56471380 - L1MEc LINE L1 -4331 2065 832 198 209 0 0 chr1 225723366 225723409 -56470255 + (CTA)n Simple_repeat Simple_repeat 2 44 0 245 225 113 12 chr1 225724004 225724084 -56469580 - MIR SINE MIR -99 163 76 22 0 0 0 chr1 225724098 225724120 -56469544 + AT_rich Low_complexity Low_complexity 1 22 0 826 277 69 13 chr1 225724198 225724516 -56469148 - MER46C DNA MER2_type -2 336 1 198 0 0 0 chr1 225725431 225725453 -56468211 + (TA)n Simple_repeat Simple_repeat 2 23 0 637 93 0 0 chr1 225725489 225725575 -56468089 + MER41B LTR ERV1 1 86 -549 320 309 91 46 chr1 225725780 225725955 -56467709 + MIR SINE MIR 56 238 -24 352 291 47 31 chr1 225726600 225726727 -56466937 + MIR SINE MIR 116 244 -18 24 0 0 0 chr1 225729002 225729026 -56464638 + AT_rich Low_complexity Low_complexity 1 24 0 249 57 0 0 chr1 225729739 225729774 -56463890 + (TG)n Simple_repeat Simple_repeat 2 36 0 500 298 43 55 chr1 225729938 225730193 -56463471 + MIR SINE MIR 1 252 -10 22 0 0 0 chr1 225731340 225731362 -56462302 + AT_rich Low_complexity Low_complexity 1 22 0 659 67 0 0 chr1 225731895 225731984 -56461680 - L1PA8 LINE L1 -1 6171 6083 2383 66 0 0 chr1 225731985 225732287 -56461377 + L1PA7 LINE L1 5772 6073 -81 794 270 71 49 chr1 225733188 225733354 -56460310 + LTR52 LTR ERVL 5 166 -255 1869 149 7 0 chr1 225733354 225733650 -56460014 - AluJb SINE Alu -14 298 1 794 270 71 49 chr1 225733650 225733890 -56459774 + LTR52 LTR ERVL 166 420 -1 7593 246 120 71 chr1 225733890 225737276 -56456388 + LTR52-int LTR ERVL 3 3555 -1 1034 259 139 0 chr1 225737277 225737636 -56456028 + LTR52 LTR ERVL 1 409 -12 24 32 0 0 chr1 225737692 225737723 -56455941 + AT_rich Low_complexity Low_complexity 1 31 0 234 150 0 0 chr1 225738066 225738106 -56455558 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr1 225738642 225738670 -56454994 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 225738845 225738868 -56454796 + AT_rich Low_complexity Low_complexity 1 23 0 252 122 0 0 chr1 225739431 225739472 -56454192 + (TG)n Simple_repeat Simple_repeat 2 42 0 243 88 0 0 chr1 225739548 225739582 -56454082 + (TG)n Simple_repeat Simple_repeat 2 35 0 285 89 0 0 chr1 225739743 225739788 -56453876 + (CA)n Simple_repeat Simple_repeat 2 46 0 205 303 13 40 chr1 225740800 225740876 -56452788 - MIR SINE MIR -166 96 23 307 113 0 63 chr1 225741421 225741484 -56452180 - L1MB1 LINE L1 -279 5899 5841 1011 170 82 0 chr1 225741491 225741697 -56451967 + L1MA9 LINE L1 5933 6155 -157 23 54 0 0 chr1 225742092 225742129 -56451535 + AT_rich Low_complexity Low_complexity 1 37 0 830 266 48 4 chr1 225743590 225743838 -56449826 - MER46C DNA MER2_type -1 337 79 1885 284 109 37 chr1 225744619 225745923 -56447741 - HAL1 LINE L1 -5 2502 1105 570 283 93 22 chr1 225745904 225746130 -56447534 - HAL1 LINE L1 -1625 882 641 * 25 75 0 0 chr1 225746553 225746606 -56447058 + AT_rich Low_complexity Low_complexity 1 53 0 1673 179 76 21 chr1 225747540 225747870 -56445794 + MLT1A1 LTR MaLR 10 357 -8 2177 111 0 23 chr1 225748142 225748448 -56445216 - AluSg SINE Alu -11 299 1 464 211 0 35 chr1 225749776 225749890 -56443774 - AluJb SINE Alu -5 307 198 2248 76 24 0 chr1 225750481 225750769 -56442895 - AluY SINE Alu -16 295 1 1792 135 7 7 chr1 225751562 225751865 -56441799 - AluSx SINE Alu 0 303 1 1573 119 58 34 chr1 225751892 225752186 -56441478 + AluY SINE Alu 11 311 0 204 40 0 0 chr1 225752189 225752214 -56441450 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 306 174 87 87 chr1 225752479 225752594 -56441070 - MER112 DNA MER1_type -72 188 74 2227 131 0 0 chr1 225752670 225752982 -56440682 + AluSx SINE Alu 1 312 0 477 0 0 0 chr1 225752984 225753037 -56440627 + (TA)n Simple_repeat Simple_repeat 2 54 0 1870 149 89 3 chr1 225754930 225755266 -56438398 + MLT1A1 LTR MaLR 1 365 0 402 21 0 0 chr1 225755375 225755422 -56438242 + (CA)n Simple_repeat Simple_repeat 1 47 0 333 0 0 0 chr1 225756198 225756235 -56437429 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 213 310 0 56 chr1 225756455 225756526 -56437138 - L2 LINE L2 -6 3307 3241 258 344 74 70 chr1 225756725 225756883 -56436781 - L2 LINE L2 -192 3080 2919 200 59 29 0 chr1 225756883 225756917 -56436747 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 258 344 74 70 chr1 225756917 225757028 -56436636 - L2 LINE L2 -353 2919 2810 253 321 19 19 chr1 225757035 225757141 -56436523 + MER94 DNA DNA 29 134 0 391 343 109 44 chr1 225757141 225757615 -56436049 - L2 LINE L2 -512 2802 2296 547 301 73 16 chr1 225757615 225757861 -56435803 + MIR SINE MIR 2 261 -1 551 333 112 29 chr1 225757863 225758248 -56435416 + L2 LINE L2 2897 3313 0 256 326 64 57 chr1 225759554 225759818 -56433846 + L2 LINE L2 2557 2822 -492 275 336 100 0 chr1 225760460 225760600 -56433064 + Charlie8 DNA MER1_type 2 155 -2262 184 275 99 53 chr1 225760910 225761041 -56432623 - L2 LINE L2 -12 3301 3165 2376 172 50 13 chr1 225761050 225761337 -56432327 + L1MA7 LINE L1 3908 4224 -1922 2386 60 0 19 chr1 225761337 225761654 -56432010 + AluY SINE Alu 1 311 0 2376 172 50 13 chr1 225761654 225761888 -56431776 + L1MA7 LINE L1 4224 4448 -1698 2115 100 0 0 chr1 225762048 225762318 -56431346 - AluSc SINE Alu -39 270 1 1257 166 41 50 chr1 225762321 225762959 -56430705 + L1MA7 LINE L1 5559 6291 0 28 0 0 0 chr1 225763425 225763453 -56430211 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 225763558 225763586 -56430078 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr1 225764851 225764876 -56428788 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr1 225764959 225764987 -56428677 + AT_rich Low_complexity Low_complexity 1 28 0 275 294 135 32 chr1 225765583 225765709 -56427955 + L2 LINE L2 3163 3301 -12 1662 275 49 65 chr1 225765920 225766657 -56427007 - MER21B LTR ERV1 -126 737 13 244 220 0 0 chr1 225767184 225767234 -56426430 + L1M3a LINE L1 14 63 -5892 * 3009 135 9 37 chr1 225767232 225767767 -56425897 + L1MA4 LINE L1 5388 5907 -393 276 289 31 10 chr1 225768092 225768189 -56425475 + LTR48B LTR ERV1 1 99 -545 * 1425 197 80 46 chr1 225768164 225768587 -56425077 + MER39 LTR ERV1 259 578 -7 2037 208 96 35 chr1 225768587 225769194 -56424470 + LTR48B LTR ERV1 1 644 0 2016 131 0 0 chr1 225769481 225769784 -56423880 - AluSx SINE Alu 0 303 1 1009 202 21 113 chr1 225770114 225770450 -56423214 - MLT1B LTR MaLR -3 387 83 194 246 71 63 chr1 225770467 225770593 -56423071 - MER5C DNA MER1_type -147 177 51 1017 193 104 94 chr1 225770739 225771113 -56422551 + MER67C LTR ERV1 3 380 -330 301 328 45 45 chr1 225771340 225771474 -56422190 - MIR SINE MIR -12 250 117 360 241 54 45 chr1 225771636 225771748 -56421916 - AluJo SINE Alu -85 217 105 572 269 16 28 chr1 225771906 225772088 -56421576 + MER110A LTR ERV1 282 461 -7 21 36 0 0 chr1 225775119 225775147 -56418517 + AT_rich Low_complexity Low_complexity 1 28 0 224 262 48 36 chr1 225775378 225775462 -56418202 - MIR SINE MIR -5 257 173 400 292 66 0 chr1 225775809 225775946 -56417718 - MIR SINE MIR -86 176 31 193 405 154 0 chr1 225777924 225778151 -56415513 + L2 LINE L2 2616 2877 -437 321 326 51 117 chr1 225778177 225778527 -56415137 + L2 LINE L2 2926 3252 -20 257 356 74 13 chr1 225778543 225778692 -56414972 - L3 LINE CR1 0 1577 1420 180 0 0 0 chr1 225779592 225779612 -56414052 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1219 268 142 14 chr1 225780277 225780713 -56412951 - L2 LINE L2 -2245 1069 578 21 36 0 0 chr1 225781061 225781089 -56412575 + AT_rich Low_complexity Low_complexity 1 28 0 258 81 0 0 chr1 225781132 225781169 -56412495 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 340 288 116 20 chr1 225781786 225781932 -56411732 - MIR SINE MIR -36 226 67 191 409 0 0 chr1 225782133 225782221 -56411443 - MIR SINE MIR -129 133 46 206 85 21 64 chr1 225782584 225782631 -56411033 + (TTAAA)n Simple_repeat Simple_repeat 5 49 0 31 26 0 0 chr1 225783467 225783505 -56410159 + AT_rich Low_complexity Low_complexity 1 38 0 382 148 130 19 chr1 225785480 225785588 -56408076 - L1MC5 LINE L1 -34 7927 7808 25 0 0 0 chr1 225786116 225786141 -56407523 + AT_rich Low_complexity Low_complexity 1 25 0 235 333 11 11 chr1 225787694 225787781 -56405883 - L2 LINE L2 -239 3033 2947 225 247 101 44 chr1 225787962 225788120 -56405544 - L1ME LINE L1 -267 5854 5688 286 320 80 8 chr1 225790178 225790303 -56403361 - MIR SINE MIR -30 232 99 24 32 0 0 chr1 225790842 225790873 -56402791 + AT_rich Low_complexity Low_complexity 1 31 0 192 285 62 49 chr1 225791586 225791730 -56401934 + MIR SINE MIR 86 231 -31 1285 174 124 11 chr1 225794867 225795132 -56398532 - AluSx SINE Alu -15 297 3 691 285 63 82 chr1 225795171 225795693 -56397971 + L1MEd LINE L1 700 1211 -4908 275 312 56 67 chr1 225795700 225796059 -56397605 + L1MEd LINE L1 1358 1712 -4598 366 327 63 6 chr1 225796749 225796908 -56396756 - MER69A DNA AcHobo 0 177 10 334 280 0 43 chr1 225796975 225797068 -56396596 + L1MC4 LINE L1 6614 6702 -1340 243 0 0 0 chr1 225797076 225797103 -56396561 + (TG)n Simple_repeat Simple_repeat 2 28 0 306 0 0 0 chr1 225797147 225797181 -56396483 + (TA)n Simple_repeat Simple_repeat 2 35 0 517 280 70 40 chr1 225797432 225797632 -56396032 - MIR SINE MIR 0 262 57 1194 239 105 0 chr1 225798598 225798903 -56394761 + MER58B DNA MER1_type 2 338 -3 308 290 65 43 chr1 225799831 225799969 -56393695 - MIR SINE MIR 0 262 122 1875 151 3 20 chr1 225799978 225800282 -56393382 - AluSx SINE Alu -13 299 1 2463 290 138 48 chr1 225800637 225802698 -56390966 + L2 LINE L2 1033 3297 -16 275 364 45 40 chr1 225802798 225803045 -56390619 - L2 LINE L2 -199 3073 2826 401 240 48 0 chr1 225803089 225803193 -56390471 + MER94 DNA DNA 14 122 -12 390 326 75 85 chr1 225803254 225803911 -56389753 - L2 LINE L2 -517 2797 2148 243 313 37 43 chr1 225803975 225804138 -56389526 - L2 LINE L2 -1390 1924 1763 396 55 0 0 chr1 225804210 225804265 -56389399 + (GA)n Simple_repeat Simple_repeat 2 56 0 222 333 49 31 chr1 225804476 225804638 -56389026 - L2 LINE L2 -1878 1436 1272 559 244 9 0 chr1 225804716 225804831 -56388833 - FLAM_A SINE Alu -19 123 8 23 54 0 0 chr1 225804967 225805004 -56388660 + AT_rich Low_complexity Low_complexity 1 37 0 190 271 114 14 chr1 225805334 225805404 -56388260 - MIR3 SINE MIR -9 199 123 276 244 61 76 chr1 225805410 225805541 -56388123 - MER112 DNA MER1_type -37 223 95 27 29 0 0 chr1 225805699 225805733 -56387931 + AT_rich Low_complexity Low_complexity 1 34 0 2134 149 11 6 chr1 225805782 225806138 -56387526 - MER47A DNA MER2_type 0 366 9 186 103 0 0 chr1 225806923 225806952 -56386712 + (CA)n Simple_repeat Simple_repeat 2 30 0 366 23 0 0 chr1 225807110 225807153 -56386511 + (TA)n Simple_repeat Simple_repeat 2 44 0 250 271 0 62 chr1 225807280 225807376 -56386288 + MER102b DNA MER1_type 244 333 -8 1586 182 60 9 chr1 225807536 225807871 -56385793 + MLT1A1 LTR MaLR 10 361 -4 22 35 0 0 chr1 225808130 225808159 -56385505 + AT_rich Low_complexity Low_complexity 1 29 0 441 333 91 13 chr1 225808365 225808437 -56385227 + MIR SINE MIR 3 68 -194 234 0 0 0 chr1 225808437 225808463 -56385201 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2111 125 0 0 chr1 225808465 225808769 -56384895 - AluSx SINE Alu -8 304 1 441 333 91 13 chr1 225808769 225808924 -56384740 + MIR SINE MIR 68 251 -11 1048 280 151 28 chr1 225809750 225810458 -56383206 - L2 LINE L2 -15 3298 2499 23 33 0 0 chr1 225810791 225810821 -56382843 + AT_rich Low_complexity Low_complexity 1 30 0 323 339 64 39 chr1 225811007 225811337 -56382327 - L1M4 LINE L1 -1161 4985 4648 290 279 23 12 chr1 225811542 225811628 -56382036 + L2 LINE L2 3222 3308 -5 293 309 134 0 chr1 225811630 225811779 -56381885 - MIR SINE MIR -73 189 21 369 374 58 28 chr1 225812153 225812514 -56381150 + L2 LINE L2 2590 2961 -353 365 293 36 48 chr1 225812592 225812759 -56380905 + L2 LINE L2 3148 3312 -1 1108 107 48 6 chr1 225813433 225813559 -56380105 + AluSp SINE Alu 1 137 -176 192 40 0 0 chr1 225813559 225813584 -56380080 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1108 107 48 6 chr1 225813584 225813625 -56380039 + AluSp SINE Alu 137 175 -138 21337 35 4 0 chr1 225814505 225817714 -56375950 - L1PA3 LINE L1 -144 6011 2793 21 36 0 0 chr1 225818755 225818783 -56374881 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 225819053 225819076 -56374588 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 225819543 225819570 -56374094 + AT_rich Low_complexity Low_complexity 1 27 0 303 323 104 22 chr1 225822561 225822926 -56370738 - HAL1 LINE L1 -1045 1462 1068 234 315 34 34 chr1 225823957 225824103 -56369561 - HAL1 LINE L1 -2337 170 25 1837 140 42 62 chr1 225825135 225825520 -56368144 + MLT1B LTR MaLR 13 389 -1 189 0 0 0 chr1 225825855 225825876 -56367788 + (CA)n Simple_repeat Simple_repeat 2 22 0 270 73 0 0 chr1 225826542 225826583 -56367081 + (TG)n Simple_repeat Simple_repeat 2 42 0 210 230 0 54 chr1 225826908 225826982 -56366682 + CT-rich Low_complexity Low_complexity 4 73 0 2990 212 122 12 chr1 225827358 225828109 -56365555 - L1MC4 LINE L1 -440 7602 6728 1702 148 117 11 chr1 225828109 225828467 -56365197 + MSTD LTR MaLR 1 396 0 2990 212 122 12 chr1 225828467 225828644 -56365020 - L1MC4 LINE L1 -1314 6728 6572 1102 214 54 20 chr1 225828648 225828942 -56364722 + L1MD3 LINE L1 7691 7994 -1 23 0 0 0 chr1 225829619 225829642 -56364022 + AT_rich Low_complexity Low_complexity 1 23 0 312 235 0 0 chr1 225830601 225830669 -56362995 + L2 LINE L2 2183 2250 -1064 891 310 52 91 chr1 225830670 225830813 -56362851 + L2 LINE L2 2777 2924 -389 2173 105 3 0 chr1 225830813 225831107 -56362557 - AluSp SINE Alu -18 295 1 891 310 52 91 chr1 225831107 225831523 -56362141 + L2 LINE L2 2924 3313 0 243 261 14 0 chr1 225832018 225832087 -56361577 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 25 0 0 0 chr1 225833838 225833863 -56359801 + AT_rich Low_complexity Low_complexity 1 25 0 4937 28 0 0 chr1 225833864 225834441 -56359223 - L1PA3 LINE L1 -3 6152 5576 2197 0 0 0 chr1 225834441 225834689 -56358975 + L1PA3 LINE L1 5327 5574 -581 1882 197 53 12 chr1 225835046 225835462 -56358202 + L1MB8 LINE L1 5439 5871 -313 445 252 0 0 chr1 225835461 225835564 -56358100 + L1PB4 LINE L1 6040 6142 -14 * 967 174 0 61 chr1 225835638 225835834 -56357830 + AluJb SINE Alu 1 184 -128 834 181 62 44 chr1 225835836 225836063 -56357601 + L1MB8 LINE L1 5943 6173 -5 343 270 90 0 chr1 225838487 225838598 -56355066 - Charlie8 DNA MER1_type -2165 252 132 477 204 19 0 chr1 225840106 225840214 -56353450 + MER20B DNA MER1_type 267 376 -407 789 203 37 9 chr1 225840308 225840525 -56353139 + MER20B DNA MER1_type 543 765 -18 914 238 53 70 chr1 225840968 225841309 -56352355 - MER46C DNA MER2_type 0 338 4 236 255 0 0 chr1 225841395 225841446 -56352218 + MER65C LTR ERV1 1 51 -410 996 159 23 6 chr1 225841446 225841622 -56352042 + LTR26 LTR ERV1 1 179 -424 1197 312 14 7 chr1 225841638 225842051 -56351613 - L2 LINE L2 -2267 1047 632 245 151 58 47 chr1 225843397 225843519 -56350145 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 209 57 29 0 chr1 225843554 225843589 -56350075 + (TA)n Simple_repeat Simple_repeat 1 36 0 383 241 46 138 chr1 225843632 225843827 -56349837 + MLT1J LTR MaLR 5 181 -330 1781 153 0 4 chr1 225844039 225844313 -56349351 + AluSx SINE Alu 1 273 -39 393 22 0 0 chr1 225844313 225844359 -56349305 + (TC)n Simple_repeat Simple_repeat 2 47 0 361 254 39 39 chr1 225844538 225844668 -56348996 + MIR SINE MIR 87 216 -46 22 35 0 0 chr1 225846167 225846196 -56347468 + AT_rich Low_complexity Low_complexity 1 29 0 187 324 102 0 chr1 225846207 225846315 -56347349 - MIR SINE MIR -48 214 96 2176 65 0 34 chr1 225846833 225847174 -56346490 - AluY SINE Alu 0 331 1 298 130 0 19 chr1 225847923 225847977 -56345687 - MER5C DNA MER1_type -1 323 271 541 217 42 8 chr1 225848147 225848267 -56345397 - MER5C DNA MER1_type -200 124 1 1170 140 18 5 chr1 225848742 225848964 -56344700 + L1MA9 LINE L1 6088 6312 0 1895 109 3 53 chr1 225849192 225849496 -56344168 + AluSx SINE Alu 16 304 -8 31 44 0 0 chr1 225849532 225849577 -56344087 + AT_rich Low_complexity Low_complexity 1 45 0 1094 172 5 5 chr1 225850054 225850240 -56343424 - MER7A DNA MER2_type -162 184 1 399 291 45 90 chr1 225850432 225850605 -56343059 + MIR SINE MIR 2 160 -102 2074 218 39 44 chr1 225850605 225851150 -56342514 + MLT1F LTR MaLR 1 542 0 399 291 45 90 chr1 225851150 225851244 -56342420 + MIR SINE MIR 160 257 -5 308 267 0 0 chr1 225851344 225851419 -56342245 + L1ME LINE L1 5562 5636 -485 228 147 0 0 chr1 225852293 225852327 -56341337 + L2 LINE L2 3182 3215 -98 3047 269 55 25 chr1 225852354 225854191 -56339473 - L1ME LINE L1 -678 5553 3629 487 287 66 17 chr1 225854378 225854559 -56339105 + MLT1E LTR MaLR 403 592 -1 286 314 34 39 chr1 225854653 225854860 -56338804 - L1ME LINE L1 -5831 565 360 195 237 26 0 chr1 225855015 225855053 -56338611 - L2 LINE L2 -33 3239 3201 212 292 83 42 chr1 225855255 225855399 -56338265 + L2 LINE L2 2554 2703 -611 27 0 0 0 chr1 225855653 225855680 -56337984 + AT_rich Low_complexity Low_complexity 1 27 0 615 168 32 53 chr1 225856464 225856637 -56337027 + L1MD3 LINE L1 7607 7986 -9 329 186 71 114 chr1 225856871 225857011 -56336653 + L1MC4 LINE L1 7909 8042 0 24 0 0 0 chr1 225857540 225857564 -56336100 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 225857662 225857683 -56335981 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr1 225858351 225858378 -56335286 + (TG)n Simple_repeat Simple_repeat 1 27 0 500 312 181 14 chr1 225859075 225859434 -56334230 - L2 LINE L2 -686 2628 2210 423 298 120 41 chr1 225859468 225860083 -56333581 - L1M4 LINE L1 -1897 4249 3586 275 336 70 21 chr1 225860347 225860490 -56333174 - MIR SINE MIR -111 151 2 22 35 0 0 chr1 225860721 225860750 -56332914 + AT_rich Low_complexity Low_complexity 1 29 0 282 186 81 23 chr1 225860758 225860844 -56332820 - MLT1H LTR MaLR -1 541 451 842 288 36 39 chr1 225860875 225861181 -56332483 - MLT1H LTR MaLR -198 351 47 32 57 0 0 chr1 225862014 225862067 -56331597 + AT_rich Low_complexity Low_complexity 1 53 0 223 298 64 50 chr1 225862106 225862247 -56331417 - MIR SINE MIR -12 250 108 212 279 177 13 chr1 225862269 225862348 -56331316 + MER5B DNA MER1_type 86 177 -1 354 80 0 0 chr1 225863852 225863902 -56329762 + (TG)n Simple_repeat Simple_repeat 1 50 0 983 216 10 0 chr1 225864138 225864342 -56329322 - MER3 DNA MER1_type -2 207 2 1682 210 14 11 chr1 225864438 225864790 -56328874 + MLT1A1 LTR MaLR 1 353 -12 25 0 0 0 chr1 225865089 225865114 -56328550 + AT_rich Low_complexity Low_complexity 1 25 0 237 326 197 0 chr1 225865156 225865334 -56328330 + MIR SINE MIR 50 262 0 1654 287 99 39 chr1 225865509 225867512 -56326152 + L1ME LINE L1 20 2145 -3935 * 4717 187 33 20 chr1 225867498 225868534 -56325130 + L1MC2 LINE L1 5296 6344 0 338 378 45 33 chr1 225868882 225869215 -56324449 + L2 LINE L2 2470 2806 -508 307 346 53 80 chr1 225869338 225869601 -56324063 + L2 LINE L2 2988 3243 -29 185 275 154 0 chr1 225869607 225869698 -56323966 + MIR SINE MIR 148 252 -10 21 0 0 0 chr1 225870369 225870390 -56323274 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 225871361 225871383 -56322281 + AT_rich Low_complexity Low_complexity 1 22 0 945 163 25 35 chr1 225872666 225872868 -56320796 + MER67D LTR ERV1 4 203 -311 487 330 48 11 chr1 225872870 225873058 -56320606 + L2 LINE L2 1378 1572 -1742 217 170 0 19 chr1 225873430 225873483 -56320181 + (TTAA)n Simple_repeat Simple_repeat 1 52 0 212 266 276 0 chr1 225874019 225874123 -56319541 - MIR SINE MIR -51 157 28 308 330 22 0 chr1 225874431 225874522 -56319142 + LTR16A LTR ERVL 86 178 -272 474 286 78 63 chr1 225874712 225874804 -56318860 + L1MEd LINE L1 6 95 -6024 422 65 16 0 chr1 225874804 225874866 -56318798 + (CA)n Simple_repeat Simple_repeat 2 64 0 474 286 78 63 chr1 225874866 225875028 -56318636 + L1MEd LINE L1 95 264 -5855 1617 180 17 75 chr1 225875242 225875653 -56318011 - MLT1B LTR MaLR -3 387 1 1271 260 191 30 chr1 225875667 225876259 -56317405 + L2 LINE L2 1791 2477 -837 400 263 23 60 chr1 225877791 225877924 -56315740 + L2 LINE L2 3186 3313 0 6769 248 30 8 chr1 225879335 225880927 -56312737 + L1PA12 LINE L1 18 1644 -5937 12313 229 15 24 chr1 225880995 225884260 -56309404 + L1PA12 LINE L1 2461 5696 -1888 1487 191 0 0 chr1 225884260 225884538 -56309126 + L1PA12 LINE L1 6206 6483 -1101 23 0 0 0 chr1 225884745 225884768 -56308896 + AT_rich Low_complexity Low_complexity 1 23 0 836 178 222 57 chr1 225885348 225885658 -56308006 - L1MB7 LINE L1 0 6184 5803 180 0 0 0 chr1 225885658 225885678 -56307986 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 836 178 222 57 chr1 225885678 225885694 -56307970 - L1MB7 LINE L1 -381 5803 5791 1323 220 36 33 chr1 225885701 225886060 -56307604 - MLT1A1 LTR MaLR -4 361 2 6871 225 60 14 chr1 225886061 225887720 -56305944 - MLT1A1-int LTR MaLR 0 1735 1 1275 197 58 58 chr1 225887720 225888085 -56305579 - MLT1A1 LTR MaLR 0 365 1 1156 223 138 20 chr1 225888335 225888522 -56305142 - MSTD LTR MaLR 0 396 233 534 57 0 0 chr1 225888522 225888592 -56305072 + (GA)n Simple_repeat Simple_repeat 1 70 0 1156 223 138 20 chr1 225888592 225888758 -56304906 - MSTD LTR MaLR -163 233 1 206 245 0 0 chr1 225888815 225888868 -56304796 + A-rich Low_complexity Low_complexity 1 53 0 691 201 8 0 chr1 225889828 225889962 -56303702 + FLAM_C SINE Alu 1 135 -8 30 0 0 0 chr1 225892007 225892037 -56301627 + AT_rich Low_complexity Low_complexity 1 30 0 1377 180 252 12 chr1 225892098 225892443 -56301221 - MSTA LTR MaLR 0 428 1 240 122 0 0 chr1 225894256 225894297 -56299367 + (TG)n Simple_repeat Simple_repeat 2 42 0 1775 165 20 69 chr1 225895230 225895636 -56298028 + MLT1B LTR MaLR 1 386 -4 22 35 0 0 chr1 225895670 225895699 -56297965 + AT_rich Low_complexity Low_complexity 1 29 0 197 219 0 0 chr1 225895808 225895849 -56297815 + L2 LINE L2 3273 3313 0 1152 306 73 78 chr1 225896060 225896709 -56296955 + HAL1 LINE L1 24 675 -1832 213 108 0 0 chr1 225896709 225896746 -56296918 + (TG)n Simple_repeat Simple_repeat 1 37 0 1152 306 73 78 chr1 225896746 225897709 -56295955 + HAL1 LINE L1 675 1628 -879 2206 34 4 0 chr1 225897723 225897987 -56295677 + L1PA4 LINE L1 5729 5993 -162 352 304 37 22 chr1 225898273 225898408 -56295256 - L2 LINE L2 -5 3308 3172 343 368 108 48 chr1 225898582 225899193 -56294471 - L2 LINE L2 -385 2929 2282 192 360 40 33 chr1 225900560 225900710 -56292954 - L2 LINE L2 -451 2863 2713 374 343 91 37 chr1 225903225 225903467 -56290197 - L2 LINE L2 -253 3060 2806 390 255 141 13 chr1 225903484 225903633 -56290031 - L2 LINE L2 -702 2612 2445 313 297 25 25 chr1 225904116 225904234 -56289430 + MIR SINE MIR 97 214 -48 38 22 0 0 chr1 225904265 225904310 -56289354 + AT_rich Low_complexity Low_complexity 1 45 0 288 310 44 37 chr1 225904618 225904766 -56288898 - MIR SINE MIR -62 146 6 295 290 80 50 chr1 225904984 225905001 -56288663 + L3b LINE CR1 1155 1170 -413 180 0 0 0 chr1 225905001 225905021 -56288643 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 295 290 80 50 chr1 225905021 225905203 -56288461 + L3b LINE CR1 1170 1360 -223 1203 339 58 17 chr1 225906216 225906733 -56286931 + L2 LINE L2 2171 2708 -606 505 328 135 15 chr1 225906745 225907071 -56286593 + L2 LINE L2 2897 3261 -52 1542 163 31 62 chr1 225907159 225907479 -56286185 - AluSg SINE Alu 0 310 1 941 213 199 26 chr1 225908601 225908953 -56284711 - MLT2D LTR ERVL -1 413 1 221 104 39 52 chr1 225908966 225909043 -56284621 + T-rich Low_complexity Low_complexity 5 80 0 202 276 0 17 chr1 225909228 225909286 -56284378 - MIR SINE MIR -147 115 59 5164 151 7 22 chr1 225909557 225910239 -56283425 + L1PB4 LINE L1 5117 5782 -374 189 74 0 0 chr1 225910239 225910266 -56283398 + (CA)n Simple_repeat Simple_repeat 2 28 0 5164 151 7 22 chr1 225910266 225910633 -56283031 + L1PB4 LINE L1 5782 6153 -3 1865 134 10 10 chr1 225910717 225911016 -56282648 + AluSx SINE Alu 1 299 -13 247 282 0 14 chr1 225911306 225911377 -56282287 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 22 0 0 0 chr1 225911688 225911710 -56281954 + AT_rich Low_complexity Low_complexity 1 22 0 221 301 14 0 chr1 225912159 225912232 -56281432 + (CATA)n Simple_repeat Simple_repeat 3 76 0 5771 26 1 0 chr1 225913043 225913731 -56279933 - L1P LINE L1 -1284 4862 4174 263 217 33 0 chr1 225914207 225914267 -56279397 + MER110 LTR ERV1 166 227 -264 309 269 118 8 chr1 225914560 225914679 -56278985 - L1ME LINE L1 -297 5824 5693 27 87 0 0 chr1 225914702 225914771 -56278893 + AT_rich Low_complexity Low_complexity 1 69 0 674 212 82 22 chr1 225915217 225915401 -56278263 + LTR37B LTR ERV1 274 468 0 432 309 64 10 chr1 225915497 225915792 -56277872 + L1M4 LINE L1 4567 4877 -1269 5696 116 7 9 chr1 225916387 225917560 -56276104 + L1PA13 LINE L1 4975 6152 -11 479 329 59 59 chr1 225918140 225918183 -56275481 - MLT1K LTR MaLR -13 575 533 6136 82 14 1 chr1 225918183 225918999 -56274665 + LTR12 LTR ERV1 1 826 0 479 329 59 59 chr1 225918999 225919367 -56274297 - MLT1K LTR MaLR -55 533 161 1857 157 231 47 chr1 225919367 225919903 -56273761 + LTR24C LTR ERV1 1 635 0 479 329 59 59 chr1 225919903 225920064 -56273600 - MLT1K LTR MaLR -426 162 2 24 0 0 0 chr1 225920477 225920501 -56273163 + AT_rich Low_complexity Low_complexity 1 24 0 1492 229 16 34 chr1 225920791 225921171 -56272493 - MER82 DNA MER2_type -85 568 196 570 253 167 0 chr1 225921444 225921618 -56272046 - MER82 DNA MER2_type -449 204 2 378 0 0 0 chr1 225921619 225921661 -56272003 + (TG)n Simple_repeat Simple_repeat 1 42 0 29 0 0 0 chr1 225921887 225921916 -56271748 + AT_rich Low_complexity Low_complexity 1 29 0 1637 161 97 13 chr1 225922099 225922410 -56271254 + MER1B DNA MER1_type 1 337 0 334 359 57 16 chr1 225926572 225926764 -56266900 + MIR SINE MIR 20 219 -43 182 88 0 29 chr1 225927811 225927845 -56265819 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 213 320 40 40 chr1 225928969 225929119 -56264545 - L2 LINE L2 -83 3230 3081 1795 174 19 64 chr1 225930834 225931208 -56262456 - LTR18A LTR ERVL 0 357 1 509 216 0 0 chr1 225931209 225931311 -56262353 - HERVL18 LTR ERVL 0 6047 5946 285 241 17 0 chr1 225931311 225931369 -56262295 - HERVL18 LTR ERVL -780 5267 5209 513 204 21 0 chr1 225931369 225931462 -56262202 - HERVL18 LTR ERVL -1559 4488 4394 2076 156 0 3 chr1 225931466 225932037 -56261627 - HERVL18 LTR ERVL -2470 3577 2947 * 2208 191 3 3 chr1 225932028 225932399 -56261265 - HERVL18 LTR ERVL -2959 3088 2718 1120 169 77 2 chr1 225932396 225932653 -56261011 - HERVL18 LTR ERVL -3595 2452 2119 * 276 29 0 0 chr1 225932652 225932687 -56260977 - HERVL18 LTR ERVL -4237 1810 1776 * 1979 235 29 14 chr1 225932685 225933128 -56260536 - HERVL18 LTR ERVL -4433 1614 1165 * 2156 231 0 20 chr1 225933117 225933571 -56260093 - HERVL18 LTR ERVL -5593 454 10 1908 134 23 121 chr1 225933586 225933982 -56259682 - LTR18A LTR ERVL 0 357 1 211 271 71 14 chr1 225934484 225934554 -56259110 - L2 LINE L2 -1 3271 3198 28 79 0 0 chr1 225935027 225935090 -56258574 + AT_rich Low_complexity Low_complexity 1 63 0 2202 64 7 3 chr1 225936008 225936291 -56257373 + AluY SINE Alu 1 284 -27 264 30 0 0 chr1 225936399 225936432 -56257232 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1005 259 43 12 chr1 225936663 225936988 -56256676 + MER58B DNA MER1_type 3 337 -4 30 77 0 0 chr1 225937358 225937423 -56256241 + AT_rich Low_complexity Low_complexity 1 65 0 189 378 0 0 chr1 225938035 225938109 -56255555 - L2 LINE L2 -13 3300 3227 21 0 0 0 chr1 225938419 225938440 -56255224 + AT_rich Low_complexity Low_complexity 1 21 0 1851 206 37 10 chr1 225939027 225939435 -56254229 + L1MD1 LINE L1 5446 5864 -378 344 351 42 0 chr1 225939435 225939626 -56254038 + L1MC4a LINE L1 5735 5933 -1875 2539 209 80 17 chr1 225939910 225940557 -56253107 - L1MB8 LINE L1 -3 6175 5488 495 241 0 15 chr1 225940569 225940706 -56252958 - L1MB8 LINE L1 -917 5229 5095 912 273 154 46 chr1 225941100 225942031 -56251633 + HAL1b LINE L1 159 1189 -159 25 83 0 0 chr1 225942113 225942173 -56251491 + AT_rich Low_complexity Low_complexity 1 60 0 26 64 0 0 chr1 225942466 225942513 -56251151 + AT_rich Low_complexity Low_complexity 1 47 0 7564 20 5 0 chr1 225942646 225943537 -56250127 + L1PA3 LINE L1 5259 6153 -2 188 301 24 48 chr1 225944012 225944095 -56249569 + MER5A DNA MER1_type 106 186 -3 12460 199 23 22 chr1 225946763 225951662 -56242002 + L1MA2 LINE L1 2860 7723 0 207 0 0 0 chr1 225952752 225952775 -56240889 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 70 0 0 chr1 225953203 225953246 -56240418 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr1 225953590 225953616 -56240048 + AT_rich Low_complexity Low_complexity 1 26 0 786 262 125 29 chr1 225953667 225954099 -56239565 - L1ME4a LINE L1 -267 5854 5398 26 30 0 0 chr1 225954394 225954427 -56239237 + AT_rich Low_complexity Low_complexity 1 33 0 345 308 28 56 chr1 225954447 225954590 -56239074 - L2 LINE L2 0 3272 3134 2857 209 56 14 chr1 225954713 225955377 -56238287 + MER67C LTR ERV1 1 692 -18 21 0 0 0 chr1 225955411 225955432 -56238232 + AT_rich Low_complexity Low_complexity 1 21 0 823 191 33 0 chr1 225955438 225955621 -56238043 + L1MA7 LINE L1 6095 6283 -8 272 346 105 7 chr1 225955729 225955882 -56237782 - L2 LINE L2 -703 2611 2444 567 55 14 0 chr1 225955886 225955959 -56237705 - MER4C LTR ERV1 0 465 392 632 77 11 0 chr1 225955961 225956052 -56237612 + AluSg/x SINE Alu 216 307 -2 1192 152 39 56 chr1 225956080 225956311 -56237353 - MER4B LTR ERV1 -71 539 313 1372 151 13 8 chr1 225956623 225956862 -56236802 + MER2 DNA MER2_type 1 240 -105 908 219 16 11 chr1 225956915 225957102 -56236562 + MER2 DNA MER2_type 158 345 0 3008 169 53 17 chr1 225957227 225957748 -56235916 + MER6A DNA MER2_type 1 547 -318 2334 77 3 0 chr1 225957748 225958048 -56235616 - AluY SINE Alu -10 301 1 3008 169 53 17 chr1 225958048 225958110 -56235554 + MER6A DNA MER2_type 547 605 0 246 229 0 0 chr1 225958687 225958757 -56234907 + GA-rich Low_complexity Low_complexity 2 71 0 220 351 71 32 chr1 225959443 225959597 -56234067 - L3 LINE CR1 -316 1261 1102 1291 118 181 0 chr1 225959598 225959836 -56233828 + AluSx SINE Alu 20 300 -12 1094 84 101 34 chr1 225960505 225960684 -56232980 + L1PA7 LINE L1 5962 6152 -2 202 170 71 27 chr1 225961287 225961399 -56232265 + (TATAA)n Simple_repeat Simple_repeat 5 121 0 302 255 142 75 chr1 225962299 225962538 -56231126 + L2 LINE L2 3059 3313 0 237 314 147 0 chr1 225962928 225963030 -56230634 + L2 LINE L2 3155 3271 -1 420 104 0 0 chr1 225964305 225964372 -56229292 + (CA)n Simple_repeat Simple_repeat 1 67 0 209 291 97 39 chr1 225964537 225964640 -56229024 - L3 LINE CR1 -24 1553 1445 213 333 81 64 chr1 225964698 225964932 -56228732 - L3 LINE CR1 -419 1158 921 27 0 0 0 chr1 225965271 225965298 -56228366 + AT_rich Low_complexity Low_complexity 1 27 0 258 257 16 25 chr1 225965561 225965651 -56228013 - L1ME LINE L1 -348 5773 5683 3818 88 23 0 chr1 225966281 225966812 -56226852 - L1PA8A LINE L1 -115 6016 5474 3166 105 12 10 chr1 225966812 225967325 -56226339 + L1P LINE L1 4890 5403 -743 209 384 65 29 chr1 225967794 225968070 -56225594 - L2 LINE L2 -30 3283 2998 458 353 46 46 chr1 225968145 225968533 -56225131 - L2 LINE L2 -534 2780 2393 213 253 190 0 chr1 225969682 225969761 -56223903 + L2 LINE L2 3178 3271 -1 279 276 17 0 chr1 225970188 225970209 -56223455 - L1MA4A LINE L1 -4 6299 6279 758 276 10 0 chr1 225970209 225970408 -56223256 - L1PB4 LINE L1 -9 6147 5947 2631 39 0 3 chr1 225970786 225971098 -56222566 - AluY SINE Alu 0 311 1 722 164 0 23 chr1 225971962 225972090 -56221574 + FLAM_C SINE Alu 2 126 -7 22 35 0 0 chr1 225972832 225972861 -56220803 + AT_rich Low_complexity Low_complexity 1 29 0 180 138 0 0 chr1 225972886 225972915 -56220749 - L2 LINE L2 -8 3305 3277 1412 190 21 21 chr1 225974086 225974365 -56219299 - AluJb SINE Alu -30 282 4 182 296 20 51 chr1 225974680 225974778 -56218886 - L2 LINE L2 -1353 1961 1867 24 53 0 0 chr1 225975271 225975309 -56218355 + AT_rich Low_complexity Low_complexity 1 38 0 1439 156 56 35 chr1 225976051 225976339 -56217325 - AluJb SINE Alu -18 294 1 227 284 12 0 chr1 225976488 225976569 -56217095 + (TA)n Simple_repeat Simple_repeat 1 82 0 22 0 0 0 chr1 225977314 225977336 -56216328 + AT_rich Low_complexity Low_complexity 1 22 0 313 321 62 52 chr1 225979002 225979195 -56214469 - L2 LINE L2 -923 2391 2197 229 339 41 33 chr1 225979557 225979678 -56213986 - L2 LINE L2 -274 2998 2877 2249 65 0 86 chr1 225980465 225980803 -56212861 + AluY SINE Alu 1 309 -2 180 111 0 0 chr1 225980932 225980959 -56212705 + (A)n Simple_repeat Simple_repeat 1 27 0 243 354 92 39 chr1 225981909 225982051 -56211613 + L3 LINE CR1 1335 1493 -84 673 237 16 65 chr1 225982051 225982237 -56211427 + MER45A DNA AcHobo 2 178 0 243 354 92 39 chr1 225982237 225982300 -56211364 + L3 LINE CR1 1493 1551 -26 180 0 0 0 chr1 225984013 225984033 -56209631 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 246 245 208 9 chr1 225985061 225985167 -56208497 + MIR SINE MIR 75 201 -61 205 226 38 0 chr1 225985167 225985220 -56208444 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 398 317 227 9 chr1 225986452 225986783 -56206881 - MLT1J LTR MaLR -102 409 7 235 235 114 61 chr1 225986866 225986998 -56206666 + MIR SINE MIR 124 262 0 246 311 96 40 chr1 225988960 225989137 -56204527 + L2 LINE L2 3113 3299 -14 2641 164 78 0 chr1 225989569 225990056 -56203608 - LTR45 LTR ERV1 0 525 1 37 107 0 0 chr1 225991263 225991412 -56202252 + AT_rich Low_complexity Low_complexity 1 149 0 24 53 0 0 chr1 225991461 225991499 -56202165 + AT_rich Low_complexity Low_complexity 1 38 0 385 320 74 41 chr1 225992108 225992352 -56201312 + MIR SINE MIR 11 262 0 240 246 251 14 chr1 225993126 225993333 -56200331 + L1MEc LINE L1 1906 2161 -4235 196 277 0 0 chr1 226045566 226045613 -56148051 + L2 LINE L2 2250 2296 -1018 321 335 41 97 chr1 226045614 226046026 -56147638 + L2 LINE L2 2882 3270 -2 475 228 30 0 chr1 226046920 226047021 -56146643 + MLT1A1 LTR MaLR 1 104 -261 2901 9 0 0 chr1 226047292 226047607 -56146057 - AluYb8 SINE Alu -3 315 1 25 31 0 0 chr1 226047866 226047898 -56145766 + AT_rich Low_complexity Low_complexity 1 32 0 415 203 0 0 chr1 226048523 226048602 -56145062 + AluJ/FLAM SINE Alu 1 79 -233 247 297 59 59 chr1 226048800 226048918 -56144746 + L2 LINE L2 3155 3272 0 200 223 54 18 chr1 226049224 226049336 -56144328 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 786 248 128 8 chr1 226049722 226049964 -56143700 - LTR16C LTR ERVL 0 491 221 188 244 0 0 chr1 226050351 226050392 -56143272 - L2 LINE L2 -12 3301 3261 329 357 25 19 chr1 226050688 226050845 -56142819 - MIR SINE MIR -87 175 18 209 136 0 23 chr1 226052937 226052981 -56140683 + (AGGGGG)n Simple_repeat Simple_repeat 6 48 0 188 342 26 35 chr1 226054587 226054701 -56138963 + L2 LINE L2 2992 3104 -168 1088 393 115 15 chr1 226055601 226055932 -56137732 + THE1B LTR MaLR 1 364 0 202 139 23 0 chr1 226057030 226057073 -56136591 + T-rich Low_complexity Low_complexity 3 46 0 202 331 34 54 chr1 226057274 226057422 -56136242 - L2 LINE L2 -196 3076 2932 816 364 77 25 chr1 226057462 226058190 -56135474 - L2 LINE L2 -417 2897 2132 215 304 0 0 chr1 226059165 226059221 -56134443 + L2 LINE L2 3215 3270 -2 630 235 143 36 chr1 226059262 226059513 -56134151 - MER2 DNA MER2_type -15 330 53 225 234 0 0 chr1 226059526 226059573 -56134091 + MER21B LTR ERV1 671 717 -146 * 319 208 0 0 chr1 226059571 226059624 -56134040 - MER2 DNA MER2_type -286 59 7 288 333 181 0 chr1 226059752 226059890 -56133774 - MIR SINE MIR -80 182 20 26 0 0 0 chr1 226059961 226059987 -56133677 + AT_rich Low_complexity Low_complexity 1 26 0 3040 201 25 4 chr1 226060045 226060603 -56133061 + MER21B LTR ERV1 1 570 -293 180 0 0 0 chr1 226060610 226060630 -56133034 + (A)n Simple_repeat Simple_repeat 1 20 0 745 216 0 0 chr1 226060634 226060787 -56132877 + FRAM SINE Alu 2 154 -12 21 0 0 0 chr1 226061061 226061082 -56132582 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 226061330 226061365 -56132299 + AT_rich Low_complexity Low_complexity 1 35 0 439 297 139 16 chr1 226061789 226062092 -56131572 + Tigger8 DNA MER2_type 261 600 -66 539 303 129 0 chr1 226062417 226062595 -56131069 + MIR SINE MIR 34 234 -28 270 366 6 12 chr1 226064183 226064344 -56129320 - MLT1L LTR MaLR -8 607 448 396 289 55 16 chr1 226064992 226065120 -56128544 + MLT1K LTR MaLR 446 578 -10 1902 146 7 0 chr1 226065440 226065727 -56127937 + AluSx SINE Alu 10 298 -14 231 208 19 0 chr1 226066774 226066827 -56126837 + (CA)n Simple_repeat Simple_repeat 1 54 0 349 270 70 104 chr1 226066873 226067132 -56126532 + HAL1b LINE L1 62 311 -1037 2108 115 0 0 chr1 226067193 226067488 -56126176 + AluSc SINE Alu 1 295 -14 333 379 87 41 chr1 226067730 226068142 -56125522 + L1ME3A LINE L1 5378 5808 -2000 25 31 0 0 chr1 226068439 226068471 -56125193 + AT_rich Low_complexity Low_complexity 1 32 0 499 170 30 52 chr1 226068734 226068869 -56124795 + MLT1A1 LTR MaLR 1 132 -233 694 264 16 31 chr1 226068952 226069145 -56124519 - MLT1A2 LTR MaLR -12 362 173 195 129 0 0 chr1 226069145 226069176 -56124488 + (GA)n Simple_repeat Simple_repeat 2 32 0 575 347 11 0 chr1 226069259 226069449 -56124215 - L1ME LINE L1 -483 5687 5496 440 265 101 36 chr1 226069698 226069917 -56123747 + L1ME3A LINE L1 5934 6166 -4 581 300 98 24 chr1 226070076 226070533 -56123131 + HAL1b LINE L1 347 837 -511 420 327 47 58 chr1 226070548 226070823 -56122841 + MLT1I LTR MaLR 61 332 -77 271 285 81 64 chr1 226071113 226071348 -56122316 + L1MEd LINE L1 1003 1241 -5289 540 305 93 50 chr1 226071424 226071801 -56121863 + L1MEd LINE L1 1523 1915 -4625 1073 201 0 10 chr1 226071859 226072058 -56121606 + AluJo SINE Alu 1 197 -115 651 156 18 0 chr1 226072069 226072178 -56121486 + LTR10C LTR ERV1 481 591 0 498 228 0 9 chr1 226072179 226072293 -56121371 + AluJo SINE Alu 199 311 -1 22 80 0 0 chr1 226072359 226072409 -56121255 + AT_rich Low_complexity Low_complexity 1 50 0 251 208 65 0 chr1 226072880 226072957 -56120707 + GA-rich Low_complexity Low_complexity 1 82 0 361 325 76 35 chr1 226072958 226073605 -56120059 + L1MEd LINE L1 2886 3558 -2982 386 266 32 7 chr1 226073728 226073882 -56119782 + L1MEd LINE L1 3720 3877 -2663 21 0 0 0 chr1 226074108 226074129 -56119535 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr1 226074298 226074329 -56119335 + (A)n Simple_repeat Simple_repeat 1 31 0 3729 236 43 44 chr1 226076586 226078559 -56115105 + L1MCb LINE L1 3 2193 -4552 5235 211 74 61 chr1 226078586 226079628 -56114036 + L1MC3 LINE L1 6055 7218 -567 252 311 11 22 chr1 226079628 226079718 -56113946 + MLT1F1 LTR MaLR 37 125 -442 5235 211 74 61 chr1 226079718 226080286 -56113378 + L1MC3 LINE L1 7218 7777 -8 1138 214 141 42 chr1 226080648 226081031 -56112633 + MLT1C LTR MaLR 46 466 -1 2299 100 10 0 chr1 226081046 226081396 -56112268 + AluSp SINE Alu 1 353 0 304 316 84 59 chr1 226081550 226081787 -56111877 + L1ME LINE L1 5413 5655 -466 294 182 30 0 chr1 226082142 226082208 -56111456 - L1MA10 LINE L1 -1 6333 6266 2054 136 0 3 chr1 226082355 226082656 -56111008 + AluSx SINE Alu 1 300 -12 460 272 150 6 chr1 226083920 226084093 -56109571 + MIR SINE MIR 35 232 -30 2006 121 0 10 chr1 226085154 226085451 -56108213 + AluSx SINE Alu 1 294 -18 433 133 112 20 chr1 226085670 226085768 -56107896 + Charlie5 DNA MER1_type 19 125 -2487 6573 209 56 48 chr1 226085779 226086330 -56107334 + L1M2 LINE L1 3364 3909 -3656 3029 140 43 0 chr1 226086330 226086823 -56106841 - MER75 DNA T2_type 0 514 1 6573 209 56 48 chr1 226086823 226088331 -56105333 + L1M2 LINE L1 3909 5454 -2111 3760 170 18 11 chr1 226088323 226089115 -56104549 + L1M2 LINE L1 6065 6866 -743 * 1018 261 55 20 chr1 226089177 226089575 -56104089 - MER69 DNA AcHobo -252 2274 1863 1508 278 104 22 chr1 226089577 226090174 -56103490 - MER69 DNA AcHobo -580 646 1 509 333 92 5 chr1 226091355 226091562 -56102102 + MIR SINE MIR 23 247 -15 203 0 37 0 chr1 226091881 226091908 -56101756 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 633 263 56 4 chr1 226091932 226092198 -56101466 + L1ME3A LINE L1 2377 2656 -3490 1071 257 53 60 chr1 226092375 226092958 -56100706 + L1ME3A LINE L1 4825 5403 -743 3680 201 42 12 chr1 226092958 226093760 -56099904 + LTR1B LTR ERV1 1 826 0 1666 292 54 48 chr1 226093760 226094524 -56099140 + L1ME3A LINE L1 5403 6170 0 29 47 0 0 chr1 226095438 226095481 -56098183 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr1 226095758 226095780 -56097884 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr1 226096401 226096431 -56097233 + AT_rich Low_complexity Low_complexity 1 30 0 2324 104 0 0 chr1 226099090 226099398 -56094266 + AluSg SINE Alu 1 308 -2 672 81 0 122 chr1 226100034 226100183 -56093481 - FRAM SINE Alu 0 173 40 1056 266 0 13 chr1 226100425 226100658 -56093006 - MER8 DNA MER2_type -1 238 9 1509 192 0 20 chr1 226101326 226101474 -56092190 - AluJb SINE Alu -24 288 147 2358 50 0 44 chr1 226101474 226101791 -56091873 - AluY SINE Alu -8 303 1 1509 192 0 20 chr1 226101791 226101934 -56091730 - AluJb SINE Alu -165 147 3 2447 194 9 4 chr1 226102420 226102878 -56090786 - MER66B LTR ERV1 0 486 27 548 342 43 56 chr1 226103009 226103669 -56089995 - L2 LINE L2 -107 3206 2550 1807 192 3 33 chr1 226104432 226104796 -56088868 - MLT1A1 LTR MaLR -12 353 1 266 0 29 0 chr1 226104942 226104976 -56088688 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 640 253 56 91 chr1 226104983 226105323 -56088341 - MLT2C1 LTR ERVL -69 328 1 21 0 0 0 chr1 226105475 226105496 -56088168 + AT_rich Low_complexity Low_complexity 1 21 0 647 335 91 13 chr1 226105504 226105668 -56087996 - L1MEc LINE L1 -4576 1734 1584 1692 171 24 0 chr1 226105668 226105961 -56087703 + AluJo SINE Alu 3 302 -10 647 335 91 13 chr1 226105961 226106270 -56087394 - L1MEc LINE L1 -4726 1584 1224 442 253 50 72 chr1 226106290 226106610 -56087054 - L1MEc LINE L1 -5017 1102 790 1631 187 3 19 chr1 226107118 226107428 -56086236 - AluJo SINE Alu -7 305 1 947 228 59 0 chr1 226107495 226107697 -56085967 - MER58A DNA MER1_type -10 214 1 27 0 0 0 chr1 226108027 226108054 -56085610 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr1 226108414 226108452 -56085212 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chr1 226108508 226108560 -56085104 + AT_rich Low_complexity Low_complexity 1 52 0 2024 142 3 0 chr1 226108662 226108973 -56084691 - AluSp SINE Alu -1 312 1 709 288 66 20 chr1 226109298 226109572 -56084092 - L1MEc LINE L1 -2995 3220 2960 1983 78 22 81 chr1 226109572 226109892 -56083772 + AluY SINE Alu 2 302 -9 709 288 66 20 chr1 226109892 226110207 -56083457 - L1MEc LINE L1 -3255 2960 2557 793 293 0 19 chr1 226110232 226110440 -56083224 + MER63A DNA MER1_type 2 205 -5 916 313 46 32 chr1 226110443 226111436 -56082228 - L1MEc LINE L1 -3688 2527 1566 1861 168 32 32 chr1 226111536 226111911 -56081753 + THE1C LTR MaLR 1 375 0 8832 147 58 11 chr1 226111911 226113419 -56080245 + THE1C-int LTR MaLR 1 1580 0 2002 157 32 16 chr1 226113419 226113788 -56079876 + THE1C LTR MaLR 1 375 0 388 291 76 37 chr1 226113790 226114418 -56079246 - L1MEc LINE L1 -4934 1462 810 351 0 0 0 chr1 226114654 226114693 -56078971 + (CA)n Simple_repeat Simple_repeat 2 40 0 305 244 64 0 chr1 226114695 226114773 -56078891 + L1MC4 LINE L1 6622 6704 -1338 28 0 0 0 chr1 226114959 226114987 -56078677 + AT_rich Low_complexity Low_complexity 1 28 0 266 321 139 16 chr1 226115532 226115719 -56077945 + L2 LINE L2 3103 3312 -1 198 0 0 0 chr1 226115910 226115932 -56077732 + (GA)n Simple_repeat Simple_repeat 1 22 0 406 113 0 0 chr1 226116356 226116418 -56077246 - Alu SINE Alu -15 297 236 2158 84 3 3 chr1 226116418 226116702 -56076962 - AluSg SINE Alu -26 284 1 351 378 92 0 chr1 226117781 226118019 -56075645 + MIR SINE MIR 2 261 -1 24 32 0 0 chr1 226119217 226119248 -56074416 + AT_rich Low_complexity Low_complexity 1 31 0 420 301 0 81 chr1 226119865 226120051 -56073613 + MER5A DNA MER1_type 18 188 -1 756 314 33 8 chr1 226120826 226121068 -56072596 - MIR SINE MIR 0 262 15 31 58 0 0 chr1 226121501 226121553 -56072111 + AT_rich Low_complexity Low_complexity 1 52 0 181 368 26 26 chr1 226121713 226121865 -56071799 - L2 LINE L2 -210 3062 2911 22 70 0 0 chr1 226122886 226122929 -56070735 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr1 226123209 226123242 -56070422 + AT_rich Low_complexity Low_complexity 1 33 0 412 355 27 57 chr1 226123246 226123612 -56070052 + L3 LINE CR1 844 1198 -379 243 0 0 0 chr1 226124537 226124564 -56069100 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 95 0 0 chr1 226125045 226125108 -56068556 + AT_rich Low_complexity Low_complexity 1 63 0 25 51 0 0 chr1 226126014 226126053 -56067611 + AT_rich Low_complexity Low_complexity 1 39 0 375 389 126 21 chr1 226126416 226127090 -56066574 - L2 LINE L2 -1391 1923 1179 822 226 144 0 chr1 226127211 226127406 -56066258 + MER58A DNA MER1_type 1 223 -1 589 295 30 5 chr1 226127603 226127803 -56065861 - MLT1I LTR MaLR -204 205 1 1205 227 151 10 chr1 226128584 226128928 -56064736 - MLT1F LTR MaLR 0 542 135 2066 119 162 8 chr1 226128928 226129299 -56064365 - MSTA LTR MaLR 0 428 1 1205 227 151 10 chr1 226129299 226129426 -56064238 - MLT1F LTR MaLR -407 135 27 570 368 80 26 chr1 226129838 226130471 -56063193 + L3 LINE CR1 427 1140 -437 1913 135 10 10 chr1 226131689 226131977 -56061687 - AluSx SINE Alu -24 288 1 222 37 0 0 chr1 226132090 226132117 -56061547 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr1 226132446 226132481 -56061183 + AT_rich Low_complexity Low_complexity 1 35 0 2960 160 20 63 chr1 226133582 226134221 -56059443 - LTR9 LTR ERV1 0 612 1 444 317 79 30 chr1 226134378 226134881 -56058783 - L1MC/D LINE L1 -789 5357 5087 578 186 0 0 chr1 226135192 226135294 -56058370 - AluSg/x SINE Alu -8 304 203 777 87 47 7 chr1 226135564 226135713 -56057951 + CT-rich Low_complexity Low_complexity 2 156 0 1113 71 35 0 chr1 226135743 226135913 -56057751 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 484 128 0 21 chr1 226135913 226136007 -56057657 + (TCCC)n Simple_repeat Simple_repeat 4 95 0 393 268 21 0 chr1 226136493 226136590 -56057074 - Tigger7 DNA MER2_type 0 2491 2393 * 498 237 123 0 chr1 226136587 226136701 -56056963 - Tigger7 DNA MER2_type -466 267 140 531 261 25 0 chr1 226136703 226136822 -56056842 - Tigger7 DNA MER2_type -303 247 126 576 226 68 26 chr1 226136827 226137017 -56056647 - L1MC/D LINE L1 -2224 5887 5690 324 0 0 0 chr1 226137022 226137058 -56056606 + (TG)n Simple_repeat Simple_repeat 2 37 0 8298 119 5 3 chr1 226137058 226139107 -56054557 - L1PA8 LINE L1 -4 6168 4115 8285 131 26 38 chr1 226139113 226139666 -56053998 + L1P LINE L1 2567 3125 -3021 7473 29 2 0 chr1 226139666 226141234 -56052430 + L1PA4 LINE L1 4586 6155 0 8285 131 26 38 chr1 226141234 226142172 -56051492 + L1P LINE L1 3125 4041 -2105 1268 254 111 8 chr1 226142161 226142851 -56050813 - L1MC/D LINE L1 -548 5687 4927 * 1567 289 70 18 chr1 226142852 226143423 -56050241 + LTR26 LTR ERV1 1 601 -2 2202 129 0 0 chr1 226143440 226143750 -56049914 + AluSx SINE Alu 3 312 0 1685 219 22 80 chr1 226144089 226144591 -56049073 + MER84-int LTR ERV1 535 1007 -5256 559 208 10 0 chr1 226144598 226144699 -56048965 + LTR26 LTR ERV1 501 602 -1 502 276 15 17 chr1 226144858 226145091 -56048573 + MER84-int LTR ERV1 1354 1609 -5067 643 364 38 36 chr1 226145637 226146159 -56047505 + MER84-int LTR ERV1 1183 1705 -5417 2286 86 7 3 chr1 226146770 226147072 -56046592 + AluY SINE Alu 2 304 -7 1698 126 0 80 chr1 226147132 226147465 -56046199 - AluSx SINE Alu 0 312 4 1772 350 52 53 chr1 226147609 226150700 -56042964 + MER84-int LTR ERV1 2393 7604 -516 25 0 0 0 chr1 226150909 226150934 -56042730 + AT_rich Low_complexity Low_complexity 1 25 0 480 320 0 0 chr1 226152047 226152194 -56041470 + MER84-int LTR ERV1 4272 4418 -536 595 288 74 16 chr1 226152602 226152859 -56040805 + LTR26 LTR ERV1 1 272 -331 947 211 5 15 chr1 226152882 226153086 -56040578 + AluJb SINE Alu 90 291 -21 321 82 0 0 chr1 226153086 226153135 -56040529 + (CA)n Simple_repeat Simple_repeat 2 50 0 1507 196 10 26 chr1 226153135 226153446 -56040218 + LTR26 LTR ERV1 298 603 0 940 293 45 16 chr1 226153484 226153911 -56039753 - L1MC/D LINE L1 -1308 4907 4469 825 300 61 4 chr1 226153925 226154435 -56039229 - L1MC/D LINE L1 -2657 3558 3020 342 332 40 65 chr1 226154832 226155281 -56038383 - L1MC/D LINE L1 -5876 520 83 417 303 68 10 chr1 226155312 226155622 -56038042 - L1M4 LINE L1 -2946 3903 3576 225 0 0 0 chr1 226155675 226155700 -56037964 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3824 37 0 0 chr1 226155700 226156155 -56037509 - L1PA3 LINE L1 -18 6137 5683 21 71 0 0 chr1 226156713 226156755 -56036909 + AT_rich Low_complexity Low_complexity 1 42 0 225 0 0 0 chr1 226157664 226157689 -56035975 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 369 62 0 0 chr1 226157688 226157736 -56035928 + (TA)n Simple_repeat Simple_repeat 1 48 0 * 459 0 0 0 chr1 226157735 226157786 -56035878 + (GA)n Simple_repeat Simple_repeat 2 52 0 1520 151 0 13 chr1 226157787 226158019 -56035645 - AluSx SINE Alu -35 277 49 27 73 0 0 chr1 226158162 226158217 -56035447 + AT_rich Low_complexity Low_complexity 1 55 0 576 329 147 37 chr1 226159523 226160250 -56033414 - L2 LINE L2 -556 2758 1952 23 0 0 0 chr1 226160405 226160428 -56033236 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 226161317 226161345 -56032319 + AT_rich Low_complexity Low_complexity 1 28 0 180 376 21 11 chr1 226161443 226161536 -56032128 - L2 LINE L2 -291 2981 2888 406 205 24 12 chr1 226161688 226161771 -56031893 - MER69 DNA AcHobo -4 2522 2439 398 268 43 7 chr1 226161787 226161925 -56031739 - MER69 DNA AcHobo -2296 230 88 31 68 0 0 chr1 226162957 226163016 -56030648 + AT_rich Low_complexity Low_complexity 1 59 0 4859 156 9 26 chr1 226163351 226164374 -56029290 - L1PB4 LINE L1 -2 6154 5149 3884 249 36 81 chr1 226164380 226166831 -56026833 - L1PA15-16 LINE L1 -3261 3588 1247 492 336 87 34 chr1 226167239 226167807 -56025857 - L1M2b LINE L1 -6317 892 21 1863 177 74 22 chr1 226168598 226169005 -56024659 - MSTB1 LTR MaLR -1 431 4 21 0 0 0 chr1 226169725 226169746 -56023918 + AT_rich Low_complexity Low_complexity 1 21 0 1318 197 45 24 chr1 226170287 226170576 -56023088 + AluJo SINE Alu 1 295 -17 25 0 0 0 chr1 226170634 226170659 -56023005 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 226171389 226171411 -56022253 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr1 226171781 226171826 -56021838 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 170 0 0 chr1 226171936 226171983 -56021681 + (TATG)n Simple_repeat Simple_repeat 2 48 0 247 250 29 15 chr1 226171983 226172051 -56021613 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 300 332 33 12 chr1 226172054 226172261 -56021403 - L1MC4a LINE L1 -1226 6582 6424 8521 264 36 17 chr1 226172403 226177142 -56016522 - L1 LINE L1 -2237 4495 2 276 255 43 32 chr1 226177351 226177445 -56016219 - L1M3b LINE L1 -6186 95 1 523 222 7 15 chr1 226177642 226177777 -56015887 - L1M3d LINE L1 -5756 135 2 608 245 64 83 chr1 226177931 226178462 -56015202 - L1MDa LINE L1 -2947 3593 3073 226 301 0 0 chr1 226178563 226178636 -56015028 + L1M4 LINE L1 2917 2989 -3157 68 55 0 0 chr1 226179779 226179889 -56013775 + AT_rich Low_complexity Low_complexity 1 110 0 26 0 0 0 chr1 226180822 226180848 -56012816 + AT_rich Low_complexity Low_complexity 1 26 0 1895 163 55 17 chr1 226180968 226181329 -56012335 - THE1C LTR MaLR 0 375 1 8600 131 52 45 chr1 226181329 226182897 -56010767 - THE1C-int LTR MaLR 0 1580 1 2353 138 5 8 chr1 226182897 226183267 -56010397 - THE1C LTR MaLR 0 375 7 1789 172 44 19 chr1 226184282 226184648 -56009016 - THE1C LTR MaLR 0 375 1 2014 128 0 3 chr1 226185159 226185457 -56008207 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr1 226185461 226185497 -56008167 + AT_rich Low_complexity Low_complexity 1 36 0 450 296 26 26 chr1 226185636 226185825 -56007839 + MER5A DNA MER1_type 1 189 0 411 271 188 6 chr1 226187018 226187199 -56006465 - L2 LINE L2 -1027 2287 2074 2732 248 90 37 chr1 226187244 226188563 -56005101 - L1MDa LINE L1 -3853 2687 1299 2214 69 3 23 chr1 226189230 226189536 -56004128 + AluY SINE Alu 1 300 -11 24 0 0 0 chr1 226189548 226189572 -56004092 + AT_rich Low_complexity Low_complexity 1 24 0 742 191 46 112 chr1 226189577 226189880 -56003784 - L1MA9 LINE L1 -22 6290 6008 438 127 0 0 chr1 226191120 226191191 -56002473 + (TG)n Simple_repeat Simple_repeat 2 72 0 1175 289 5 27 chr1 226191787 226192160 -56001504 - MLT1A1 LTR MaLR 0 365 1 8670 223 48 22 chr1 226192166 226194667 -55998997 + L1MA9 LINE L1 2279 4846 -1300 5294 167 31 27 chr1 226194667 226195386 -55998278 - HSMAR2 DNA Mariner -2 1300 574 2087 89 0 0 chr1 226195386 226195677 -55997987 + AluY SINE Alu 1 291 -20 5294 167 31 27 chr1 226195677 226196004 -55997660 - HSMAR2 DNA Mariner -728 574 250 3686 186 26 15 chr1 226196013 226196828 -55996836 + L1MA9 LINE L1 5489 6312 0 367 348 17 32 chr1 226196998 226197280 -55996384 - L1MC4 LINE L1 -937 6956 6602 1689 119 19 0 chr1 226197357 226197626 -55996038 - L1MA3 LINE L1 -1 6304 6031 998 197 48 6 chr1 226197893 226199350 -55994314 + L1MA8 LINE L1 4330 6282 -9 998 181 13 9 chr1 226199350 226199573 -55994091 + L1MA8 LINE L1 6064 6290 -1 1456 180 61 20 chr1 226199590 226199911 -55993753 + L1MA7 LINE L1 5769 6106 -185 219 69 0 0 chr1 226199911 226199940 -55993724 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1456 180 61 20 chr1 226199940 226199963 -55993701 + L1MA7 LINE L1 6106 6127 -164 281 155 0 0 chr1 226200141 226200199 -55993465 + L1MD3 LINE L1 7938 7995 0 24 53 0 0 chr1 226200600 226200638 -55993026 + AT_rich Low_complexity Low_complexity 1 38 0 249 236 13 19 chr1 226200937 226201045 -55992619 - L1M4 LINE L1 -5425 1117 1020 319 234 0 13 chr1 226201047 226201124 -55992540 - L1 LINE L1 -2103 4043 3968 10462 178 24 10 chr1 226201151 226204536 -55989128 - L1MA1 LINE L1 -12 7709 4276 9036 213 76 25 chr1 226204546 226206180 -55987484 - L1MA1 LINE L1 -4176 3389 1841 1298 43 0 0 chr1 226206180 226206344 -55987320 + L1PA4 LINE L1 5991 6154 -1 9036 213 76 25 chr1 226206344 226207645 -55986019 - L1MA1 LINE L1 -5724 1841 9 595 239 26 0 chr1 226207631 226207786 -55985878 - L1 LINE L1 -2167 3979 3821 * 513 242 50 11 chr1 226207777 226207959 -55985705 - L1 LINE L1 -2531 3615 3427 * 272 133 12 84 chr1 226207968 226208051 -55985613 + T-rich Low_complexity Low_complexity 3 79 0 304 273 61 0 chr1 226209087 226209219 -55984445 + L1MA10 LINE L1 6191 6330 -4 22 35 0 0 chr1 226209381 226209410 -55984254 + AT_rich Low_complexity Low_complexity 1 29 0 1689 198 57 11 chr1 226210209 226210577 -55983087 + MLT1B LTR MaLR 5 389 -1 22 99 0 0 chr1 226210591 226210662 -55983002 + AT_rich Low_complexity Low_complexity 1 71 0 347 314 121 13 chr1 226211264 226211454 -55982210 - L1MC4 LINE L1 -1056 6956 6704 1477 186 58 3 chr1 226211516 226211811 -55981853 + AluSx SINE Alu 1 311 -1 2233 83 0 17 chr1 226213259 226213559 -55980105 + AluY SINE Alu 1 295 -16 745 250 0 0 chr1 226214289 226214465 -55979199 + AluJb SINE Alu 134 309 -3 5485 241 37 16 chr1 226214478 226215703 -55977961 - L1 LINE L1 -2398 5167 3874 216 0 0 0 chr1 226215703 226215727 -55977937 + (TC)n Simple_repeat Simple_repeat 2 25 0 5485 241 37 16 chr1 226215727 226216461 -55977203 - L1 LINE L1 -3691 3874 3157 315 280 40 16 chr1 226216471 226216596 -55977068 - L1 LINE L1 -6153 1343 1216 402 21 0 0 chr1 226216737 226216784 -55976880 + (TA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr1 226218161 226218184 -55975480 + AT_rich Low_complexity Low_complexity 1 23 0 307 283 52 12 chr1 226218335 226218508 -55975156 + L1MA10 LINE L1 6133 6330 0 1629 204 57 11 chr1 226219464 226219832 -55973832 + MLT1B LTR MaLR 5 389 -1 23 33 0 0 chr1 226219850 226219880 -55973784 + AT_rich Low_complexity Low_complexity 1 30 0 443 291 145 18 chr1 226220483 226220710 -55972954 - L1MC4 LINE L1 -1007 7035 6780 1848 144 20 3 chr1 226220772 226221078 -55972586 + AluSx SINE Alu 1 311 -1 313 235 15 0 chr1 226223309 226223377 -55970287 - LTR9 LTR ERV1 0 612 544 252 281 31 0 chr1 226223471 226223567 -55970097 - L1ME LINE L1 -650 5514 5416 43892 42 1 1 chr1 226223870 226230022 -55963642 - L1PA3 LINE L1 -3 6152 3 21 57 0 0 chr1 226231340 226231375 -55962289 + AT_rich Low_complexity Low_complexity 1 35 0 250 282 29 10 chr1 226232279 226232382 -55961282 + L1M4 LINE L1 5790 5894 -290 21 36 0 0 chr1 226232598 226232626 -55961038 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr1 226232843 226232877 -55960787 + AT_rich Low_complexity Low_complexity 1 34 0 252 184 0 0 chr1 226232886 226232935 -55960729 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 2026 131 3 16 chr1 226233511 226233882 -55959782 + AluSg SINE Alu 1 310 0 918 88 0 0 chr1 226235488 226235613 -55958051 + L1PA10 LINE L1 6041 6165 -3 240 293 110 0 chr1 226235645 226235727 -55957937 - MIR SINE MIR -91 171 81 225 65 0 0 chr1 226235840 226235871 -55957793 + (TATG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr1 226236279 226236302 -55957362 + AT_rich Low_complexity Low_complexity 1 23 0 1829 164 7 0 chr1 226237249 226237542 -55956122 + AluSx SINE Alu 1 295 -17 2052 173 31 0 chr1 226238170 226238523 -55955141 + THE1B LTR MaLR 1 364 0 10194 100 23 49 chr1 226238523 226240144 -55953520 + THE1B-int LTR MaLR 1 1580 0 1997 150 21 7 chr1 226240144 226240480 -55953184 + THE1B LTR MaLR 1 362 -2 1052 199 160 11 chr1 226241049 226241311 -55952353 + AluJo SINE Alu 1 301 -1 21 0 0 0 chr1 226241616 226241637 -55952027 + AT_rich Low_complexity Low_complexity 1 21 0 8938 149 12 16 chr1 226241637 226244316 -55949348 - L1MA1 LINE L1 0 6302 3637 321 47 0 0 chr1 226245451 226245494 -55948170 + (TG)n Simple_repeat Simple_repeat 2 44 0 276 213 0 0 chr1 226245494 226245555 -55948109 + (CATATA)n Simple_repeat Simple_repeat 4 64 0 783 132 40 1 chr1 226245555 226245706 -55947958 - L1MA5A LINE L1 -44 6256 6099 1717 179 30 54 chr1 226245857 226246264 -55947400 + MLT2C1 LTR ERVL 1 397 0 456 19 0 0 chr1 226246862 226246915 -55946749 + (TA)n Simple_repeat Simple_repeat 1 53 0 510 307 153 4 chr1 226247906 226248134 -55945530 + MLT1H1 LTR MaLR 5 266 -289 255 155 93 31 chr1 226248483 226248580 -55945084 + L1M4 LINE L1 3179 3281 -2865 283 258 16 73 chr1 226248710 226248834 -55944830 + LTR12-int LTR ERV1 4976 5092 -1666 2262 199 7 4 chr1 226249851 226250308 -55943356 - L1P LINE L1 -2243 3903 3446 2472 149 26 2 chr1 226250308 226250721 -55942943 + L1PA15 LINE L1 5738 6162 -3 715 241 80 34 chr1 226251002 226251264 -55942400 + MER58 DNA MER1_type 2 275 -2145 260 334 52 60 chr1 226251277 226251660 -55942004 + LTR12-int LTR ERV1 3626 4005 -186 2430 183 23 45 chr1 226251683 226252300 -55941364 + pTR5 LTR ERV1 741 1343 -1095 4035 118 49 96 chr1 226252316 226253179 -55940485 + LTR12 LTR ERV1 5 826 0 24 0 0 0 chr1 226254717 226254741 -55938923 + AT_rich Low_complexity Low_complexity 1 24 0 225 36 0 0 chr1 226255975 226256003 -55937661 - Alu SINE Alu -12 290 263 938 302 209 37 chr1 226256291 226257103 -55936561 - L2 LINE L2 -1186 2128 1177 15751 79 6 6 chr1 226257132 226260080 -55933584 - L1PA6 LINE L1 -1 6153 3208 5828 151 26 28 chr1 226260067 226261132 -55932532 - L1PA6 LINE L1 -5073 1073 11 604 305 132 14 chr1 226261147 226261518 -55932146 - L2 LINE L2 -2124 1190 776 305 331 39 56 chr1 226261531 226261709 -55931955 - L1M4 LINE L1 -5864 991 817 295 346 67 6 chr1 226261712 226261891 -55931773 - L1M4 LINE L1 -6016 843 654 342 195 81 20 chr1 226261918 226262046 -55931618 - L1M4 LINE L1 -6362 493 107 1782 80 4 0 chr1 226262208 226262434 -55931230 - AluY SINE Alu -5 306 80 2205 107 3 0 chr1 226263914 226264205 -55929459 - AluSp SINE Alu -21 292 1 267 54 0 0 chr1 226264798 226264835 -55928829 + (TG)n Simple_repeat Simple_repeat 2 38 0 5524 143 41 95 chr1 226264840 226266142 -55927522 - Tigger3b DNA MER2_type 0 1231 1 297 0 0 0 chr1 226266168 226266201 -55927463 + (TG)n Simple_repeat Simple_repeat 2 34 0 680 157 298 31 chr1 226266854 226267045 -55926619 + L1MC1 LINE L1 6092 6333 0 1037 207 102 69 chr1 226267171 226267312 -55926352 + MER2 DNA MER2_type 1 136 -209 2060 123 0 7 chr1 226267312 226267624 -55926040 - AluSx SINE Alu 0 310 1 1037 207 102 69 chr1 226267624 226267815 -55925849 + MER2 DNA MER2_type 136 345 0 330 235 0 0 chr1 226267815 226267917 -55925747 + (TA)n Simple_repeat Simple_repeat 1 102 0 21 0 0 0 chr1 226268956 226268977 -55924687 + AT_rich Low_complexity Low_complexity 1 21 0 1554 157 4 0 chr1 226269578 226269814 -55923850 - AluSx SINE Alu -73 239 3 21 0 0 0 chr1 226269814 226269835 -55923829 + AT_rich Low_complexity Low_complexity 1 21 0 646 261 27 27 chr1 226270256 226270440 -55923224 + MER5A DNA MER1_type 6 189 0 383 265 188 6 chr1 226271638 226271819 -55921845 - L2 LINE L2 -1027 2287 2074 2777 225 99 47 chr1 226271869 226273179 -55920485 - L1MDa LINE L1 -3853 2687 1310 2288 69 3 20 chr1 226273912 226274218 -55919446 + AluY SINE Alu 1 301 -10 24 0 0 0 chr1 226274230 226274254 -55919410 + AT_rich Low_complexity Low_complexity 1 24 0 689 211 43 109 chr1 226274259 226274562 -55919102 - L1MA9 LINE L1 -22 6290 6008 369 187 0 0 chr1 226275801 226275876 -55917788 + (TG)n Simple_repeat Simple_repeat 2 76 0 1220 284 5 27 chr1 226276470 226276843 -55916821 - MLT1A1 LTR MaLR 0 365 1 8465 221 55 18 chr1 226276849 226278050 -55915614 + L1MA9 LINE L1 2279 3434 -2712 183 42 0 0 chr1 226278050 226278074 -55915590 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8465 221 55 18 chr1 226278074 226279349 -55914315 + L1MA9 LINE L1 3434 4846 -1300 5257 167 31 27 chr1 226279349 226280068 -55913596 - HSMAR2 DNA Mariner -2 1300 574 2106 82 3 7 chr1 226280068 226280360 -55913304 + AluY SINE Alu 1 291 -20 5257 167 31 27 chr1 226280360 226280687 -55912977 - HSMAR2 DNA Mariner -728 574 250 3670 185 26 15 chr1 226280696 226281511 -55912153 + L1MA9 LINE L1 5489 6312 0 343 324 28 28 chr1 226281681 226281860 -55911804 - L1MC4 LINE L1 -1086 6956 6778 21 0 0 0 chr1 226281945 226281966 -55911698 + AT_rich Low_complexity Low_complexity 1 21 0 1676 119 19 0 chr1 226282040 226282309 -55911355 - L1MA3 LINE L1 -1 6304 6031 994 198 48 5 chr1 226282575 226284033 -55909631 + L1MA8 LINE L1 4328 6282 -9 994 177 13 9 chr1 226284033 226284256 -55909408 + L1MA8 LINE L1 6064 6290 -1 1570 170 25 47 chr1 226284275 226284640 -55909024 + L1MA7 LINE L1 5771 6127 -164 272 155 0 0 chr1 226284818 226284876 -55908788 + L1MD3 LINE L1 7938 7995 0 25 31 0 0 chr1 226285277 226285309 -55908355 + AT_rich Low_complexity Low_complexity 1 32 0 227 320 10 0 chr1 226285631 226285728 -55907936 - L1M4 LINE L1 -5425 1117 1020 314 234 0 13 chr1 226285730 226285807 -55907857 - L1 LINE L1 -2103 4043 3968 5638 124 2 2 chr1 226285834 226286719 -55906945 - L1MA1 LINE L1 -12 6290 5406 388 282 159 31 chr1 226287188 226287415 -55906249 - L1MC4 LINE L1 -1007 7035 6780 1750 168 17 3 chr1 226287477 226287774 -55905890 + AluSx SINE Alu 1 301 -11 2323 75 0 16 chr1 226289226 226289532 -55904132 + AluY SINE Alu 1 301 -10 436 390 19 0 chr1 226290529 226290842 -55902822 - L1PBb LINE L1 -5833 371 53 2098 134 3 10 chr1 226291135 226291448 -55902216 - AluSx SINE Alu -1 311 1 26 30 0 0 chr1 226292479 226292512 -55901152 + AT_rich Low_complexity Low_complexity 1 33 0 2938 161 20 63 chr1 226293027 226293666 -55899998 - LTR9 LTR ERV1 0 612 1 253 282 107 34 chr1 226293892 226294041 -55899623 - L1ME LINE L1 -600 5562 5403 25 0 0 0 chr1 226294435 226294460 -55899204 + AT_rich Low_complexity Low_complexity 1 25 0 277 296 0 0 chr1 226294533 226294604 -55899060 + C-rich Low_complexity Low_complexity 5 75 0 1110 85 23 6 chr1 226294726 226294902 -55898762 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 321 165 12 24 chr1 226294902 226294987 -55898677 + CT-rich Low_complexity Low_complexity 4 87 0 557 71 20 20 chr1 226295036 226295134 -55898530 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 778 81 17 46 chr1 226295249 226295422 -55898242 + (TTTC)n Simple_repeat Simple_repeat 1 168 0 380 258 21 0 chr1 226295905 226296002 -55897662 - Tigger7 DNA MER2_type 0 2487 2389 * 698 232 14 0 chr1 226295999 226296137 -55897527 - Tigger7 DNA MER2_type -466 267 128 630 245 57 14 chr1 226296138 226296350 -55897314 - L1ME LINE L1 -346 5820 5600 8219 110 14 11 chr1 226296356 226298408 -55895256 - L1PA8 LINE L1 -3 6169 4115 9298 118 9 9 chr1 226298408 226299889 -55893775 + L1P LINE L1 2561 4042 -2104 1176 268 65 23 chr1 226299877 226300599 -55893065 - L1ME LINE L1 -548 5618 4858 * 1546 281 54 26 chr1 226300638 226301178 -55892486 + LTR26 LTR ERV1 47 601 -2 2115 137 0 3 chr1 226301193 226301500 -55892164 + AluSx SINE Alu 1 306 -6 205 70 70 0 chr1 226301750 226301793 -55891871 + T-rich Low_complexity Low_complexity 2 47 0 1476 239 66 71 chr1 226301821 226302370 -55891294 + HUERS-P1 LTR ERV1 462 1007 -5256 490 212 30 0 chr1 226302378 226302477 -55891187 + LTR26 LTR ERV1 501 602 -1 394 284 40 40 chr1 226302695 226302871 -55890793 + HUERS-P1 LTR ERV1 1434 1609 -5067 2019 115 14 10 chr1 226303050 226303346 -55890318 - AluSx SINE Alu -15 297 1 533 370 44 40 chr1 226303655 226304176 -55889488 + HUERS-P1 LTR ERV1 1183 1705 -5417 273 240 10 96 chr1 226304797 226304901 -55888763 + HUERS-P1 LTR ERV1 2286 2380 -5012 1588 353 52 37 chr1 226305309 226306913 -55886751 + HUERS-P1 LTR ERV1 2651 4278 -2844 185 158 79 118 chr1 226307377 226307453 -55886211 - L3 LINE CR1 -1100 477 405 505 305 54 58 chr1 226307582 226308132 -55885532 + HUERS-P1 LTR ERV1 4938 7604 -516 463 307 33 28 chr1 226309393 226309608 -55884056 + HUERS-P1 LTR ERV1 4214 4429 -525 347 250 35 43 chr1 226309903 226310019 -55883645 + HUERS-P1 LTR ERV1 6148 6262 -1 642 284 68 25 chr1 226310020 226310298 -55883366 + LTR26 LTR ERV1 1 290 -313 808 196 4 96 chr1 226310300 226310530 -55883134 + AluJb SINE Alu 90 298 -14 255 61 0 0 chr1 226310533 226310566 -55883098 + (CA)n Simple_repeat Simple_repeat 2 34 0 1575 176 6 44 chr1 226310566 226310884 -55882780 + LTR26 LTR ERV1 298 603 0 949 269 45 49 chr1 226310922 226311235 -55882429 - L1M4 LINE L1 -1308 4838 4526 2433 56 0 13 chr1 226311235 226311539 -55882125 + AluY SINE Alu 1 300 -11 949 269 45 49 chr1 226311539 226311674 -55881990 - L1M4 LINE L1 -1620 4526 4392 864 298 65 6 chr1 226311678 226312189 -55881475 - L1M4 LINE L1 -2653 3493 2953 474 275 107 11 chr1 226312825 226313003 -55880661 + MIR SINE MIR 20 214 -48 2361 222 66 68 chr1 226313061 226313836 -55879828 + L1ME1 LINE L1 5380 6152 -14 14972 41 4 1 chr1 226314262 226316136 -55877528 - L1P2 LINE L1 -1602 4544 2665 6623 50 6 1 chr1 226316133 226317234 -55876430 + L1P2 LINE L1 4553 5656 -498 * 317 348 32 61 chr1 226317595 226318037 -55875627 - L1MEc LINE L1 -5867 529 101 497 280 71 10 chr1 226318083 226318394 -55875270 - L1M4 LINE L1 -2944 3202 2873 523 57 9 38 chr1 226319887 226319992 -55873672 + (TA)n Simple_repeat Simple_repeat 2 103 0 661 41 7 62 chr1 226320744 226320889 -55872775 + (TA)n Simple_repeat Simple_repeat 2 138 0 375 23 0 0 chr1 226320888 226320932 -55872732 + (GA)n Simple_repeat Simple_repeat 2 45 0 * 1477 143 0 22 chr1 226320932 226321162 -55872502 - AluSx SINE Alu -39 273 49 1354 84 10 25 chr1 226321591 226321794 -55871870 - MER11B LTR ERVK 0 1236 1037 2183 90 0 23 chr1 226322014 226322324 -55871340 + AluY SINE Alu 1 303 -8 2166 202 29 0 chr1 226322573 226322726 -55870938 - L1P LINE L1 -2243 3903 3756 243 0 0 0 chr1 226322726 226322753 -55870911 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2166 202 29 0 chr1 226322753 226323044 -55870620 - L1P LINE L1 -2390 3756 3446 2669 136 11 5 chr1 226323044 226323465 -55870199 + L1PA15 LINE L1 5728 6163 -2 836 234 56 45 chr1 226323742 226324011 -55869653 + MER58 DNA MER1_type 4 275 -2145 182 205 77 0 chr1 226324975 226325014 -55868650 + MIR SINE MIR 110 151 -111 203 265 103 26 chr1 226325588 226325705 -55867959 - L2 LINE L2 -471 2843 2718 24 32 0 0 chr1 226326369 226326400 -55867264 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr1 226326509 226326552 -55867112 + AT_rich Low_complexity Low_complexity 1 43 0 1957 124 10 13 chr1 226327170 226327469 -55866195 + AluSc SINE Alu 9 306 -3 1762 177 0 7 chr1 226327648 226327942 -55865722 - AluSx SINE Alu -20 292 1 34 24 0 0 chr1 226328158 226328199 -55865465 + AT_rich Low_complexity Low_complexity 1 41 0 234 284 11 0 chr1 226328371 226328459 -55865205 + L1ME4a LINE L1 6030 6118 -3 765 301 32 6 chr1 226329461 226329800 -55863864 + L1M4 LINE L1 4481 4828 -1318 1007 292 28 5 chr1 226329990 226330384 -55863280 + L1M4 LINE L1 4481 4883 -1263 535 178 0 8 chr1 226330403 226330521 -55863143 - L1PA13 LINE L1 -14 6149 6033 577 179 119 30 chr1 226330626 226330827 -55862837 + MER2 DNA MER2_type 105 323 -22 191 215 15 0 chr1 226330841 226330906 -55862758 + (TA)n Simple_repeat Simple_repeat 1 66 0 23 0 0 0 chr1 226332355 226332378 -55861286 + AT_rich Low_complexity Low_complexity 1 23 0 1667 178 11 0 chr1 226332525 226332838 -55860826 - AluSx SINE Alu 0 320 5 23 0 0 0 chr1 226332838 226332861 -55860803 + AT_rich Low_complexity Low_complexity 1 23 0 514 324 58 49 chr1 226333633 226334120 -55859544 - L1MEc LINE L1 -5867 529 39 884 185 0 0 chr1 226334198 226334344 -55859320 + FRAM SINE Alu 1 145 -31 611 309 27 18 chr1 226334641 226334864 -55858800 - L1MC4 LINE L1 -1039 7003 6779 310 183 17 125 chr1 226335138 226335258 -55858406 - MLT1D LTR MaLR -398 107 1 1708 191 0 0 chr1 226335313 226335650 -55858014 - AluSx SINE Alu 0 339 3 7350 142 50 29 chr1 226336245 226337564 -55856100 - THE1C-int LTR MaLR -233 1347 1 1460 166 55 68 chr1 226337564 226337635 -55856029 - THE1C LTR MaLR 0 375 305 1822 178 7 0 chr1 226337635 226337944 -55855720 + AluSx SINE Alu 1 311 -1 1460 166 55 68 chr1 226337944 226338252 -55855412 - THE1C LTR MaLR -70 305 1 411 237 93 43 chr1 226338463 226338775 -55854889 - L1MDa LINE L1 -4918 1622 1300 1187 261 103 61 chr1 226338786 226339499 -55854165 - L1MDa LINE L1 -5377 1163 31 25 0 0 0 chr1 226340306 226340331 -55853333 + AT_rich Low_complexity Low_complexity 1 25 0 740 232 88 15 chr1 226340335 226340453 -55853211 - L1MA9 LINE L1 -22 6290 6182 234 62 0 0 chr1 226340453 226340485 -55853179 + (TG)n Simple_repeat Simple_repeat 1 32 0 198 0 0 0 chr1 226340484 226340506 -55853158 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 740 232 88 15 chr1 226340485 226340650 -55853014 - L1MA9 LINE L1 -130 6182 6009 1042 136 25 25 chr1 226341365 226341563 -55852101 - L1MA5A LINE L1 0 6297 6100 1573 190 42 62 chr1 226341720 226342125 -55851539 + MLT2C1 LTR ERVL 1 397 0 408 314 186 5 chr1 226343714 226343934 -55849730 + MLT1H1 LTR MaLR 7 266 -289 245 300 0 14 chr1 226344081 226344151 -55849513 + MLT1H1 LTR MaLR 420 488 -61 344 238 40 117 chr1 226344159 226344382 -55849282 + L1 LINE L1 3073 3278 -2868 21 0 0 0 chr1 226344440 226344461 -55849203 + AT_rich Low_complexity Low_complexity 1 21 0 346 313 23 31 chr1 226344994 226345122 -55848542 + MER21-int LTR ERV1 2650 2776 -1415 1446 114 0 0 chr1 226345288 226345511 -55848153 - AluSg/x SINE Alu 0 310 93 687 122 6 94 chr1 226345812 226345993 -55847671 + L1PA11 LINE L1 6006 6170 -4 2062 147 0 0 chr1 226346007 226346319 -55847345 + AluSx SINE Alu 1 312 0 26 30 0 0 chr1 226346957 226346990 -55846674 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr1 226347541 226347580 -55846084 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr1 226348934 226348969 -55844695 + AT_rich Low_complexity Low_complexity 1 35 0 337 243 9 28 chr1 226349873 226349980 -55843684 + L1MB5 LINE L1 5790 5894 -280 21 36 0 0 chr1 226350197 226350225 -55843439 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr1 226350826 226350856 -55842808 + AT_rich Low_complexity Low_complexity 1 30 0 252 184 0 0 chr1 226350865 226350914 -55842750 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 2161 114 3 0 chr1 226351687 226352044 -55841620 + AluSg SINE Alu 1 358 0 904 66 8 0 chr1 226353645 226353766 -55839898 + L1PA10 LINE L1 6044 6165 -3 266 259 106 12 chr1 226353795 226353880 -55839784 - MIR SINE MIR -89 173 81 276 30 0 0 chr1 226353990 226354023 -55839641 + (TATG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr1 226354435 226354458 -55839206 + AT_rich Low_complexity Low_complexity 1 23 0 1875 150 7 3 chr1 226355399 226355693 -55837971 + AluSx SINE Alu 1 295 -17 2082 166 25 3 chr1 226356320 226356676 -55836988 + THE1B LTR MaLR 1 364 0 10367 98 18 47 chr1 226356676 226358303 -55835361 + THE1B-int LTR MaLR 1 1580 0 1948 157 22 8 chr1 226358303 226358639 -55835025 + THE1B LTR MaLR 1 362 -2 1039 190 163 12 chr1 226359236 226359494 -55834170 + AluJo SINE Alu 1 297 -5 25 0 0 0 chr1 226359802 226359827 -55833837 + AT_rich Low_complexity Low_complexity 1 25 0 8841 150 11 12 chr1 226359829 226362493 -55831171 - L1MA1 LINE L1 -7 6295 3637 1278 167 0 0 chr1 226362717 226362944 -55830720 - L1PA13 LINE L1 -39 6124 5898 1236 254 56 21 chr1 226362945 226363690 -55829974 + L1MD2 LINE L1 4892 5656 -703 636 309 64 0 chr1 226363690 226363894 -55829770 + MER58A DNA MER1_type 1 217 -7 1962 216 45 81 chr1 226363901 226364590 -55829074 + L1MD2 LINE L1 5680 6343 -16 401 268 50 30 chr1 226364655 226364853 -55828811 - L1MC4 LINE L1 -1003 7039 6838 933 275 106 47 chr1 226364867 226365426 -55828238 - MLT1G LTR MaLR -1 594 1 1706 287 188 28 chr1 226365734 226366906 -55826758 - L2 LINE L2 -1180 2134 776 379 275 126 52 chr1 226367098 226367473 -55826191 - L1M4b LINE L1 -6018 841 11 2458 45 3 13 chr1 226367549 226367859 -55825805 - AluY SINE Alu -4 307 1 26 64 0 0 chr1 226368949 226368996 -55824668 + AT_rich Low_complexity Low_complexity 1 47 0 354 23 0 0 chr1 226370005 226370048 -55823616 + (TG)n Simple_repeat Simple_repeat 2 44 0 6366 151 49 22 chr1 226370049 226370498 -55823166 - Tigger3b DNA MER2_type -1797 1231 795 559 91 11 0 chr1 226370498 226370586 -55823078 - L1PB2 LINE L1 -4 6147 6059 6366 151 49 22 chr1 226370586 226371335 -55822329 - Tigger3b DNA MER2_type -2233 795 1 288 0 0 0 chr1 226371352 226371384 -55822280 + (TG)n Simple_repeat Simple_repeat 2 33 0 520 160 21 31 chr1 226372055 226372247 -55821417 + L1MC1 LINE L1 6092 6333 0 1202 123 5 44 chr1 226372411 226372615 -55821049 + MER2 DNA MER2_type 14 209 -136 1885 130 13 30 chr1 226373144 226373444 -55820220 + AluSq SINE Alu 1 295 -18 25 31 0 0 chr1 226375247 226375279 -55818385 + AT_rich Low_complexity Low_complexity 1 32 0 456 335 66 52 chr1 226375406 226375890 -55817774 - L1MEc LINE L1 -5867 529 39 524 253 120 0 chr1 226375967 226376125 -55817539 + FRAM SINE Alu 1 176 0 742 251 36 22 chr1 226376431 226376654 -55817010 - L1MC4 LINE L1 -1038 7004 6779 271 225 8 117 chr1 226376936 226377056 -55816608 - MLT1D LTR MaLR -398 107 1 36930 88 7 29 chr1 226377118 226383412 -55810252 - L1PA6 LINE L1 -1 6153 11 22 0 0 0 chr1 226383756 226383778 -55809886 + AT_rich Low_complexity Low_complexity 1 22 0 2109 110 0 7 chr1 226384061 226384351 -55809313 - AluSx SINE Alu -24 288 1 24 103 0 0 chr1 226384476 226384563 -55809101 + AT_rich Low_complexity Low_complexity 1 87 0 2339 126 31 14 chr1 226385465 226385823 -55807841 - THE1B LTR MaLR 0 364 1 301 305 77 25 chr1 226386996 226387321 -55806343 - L1M4 LINE L1 -1542 4604 4263 200 0 100 0 chr1 226387607 226387647 -55806017 + (TAAG)n Simple_repeat Simple_repeat 3 46 0 21 0 0 0 chr1 226388860 226388881 -55804783 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr1 226389107 226389152 -55804512 + AT_rich Low_complexity Low_complexity 1 45 0 304 267 65 3 chr1 226389647 226389801 -55803863 + L1MEc LINE L1 389 1583 -857 22 70 0 0 chr1 226390016 226390059 -55803605 + AT_rich Low_complexity Low_complexity 1 43 0 346 336 87 29 chr1 226390105 226390417 -55803247 + L1MEc LINE L1 2688 3017 -3129 287 73 0 18 chr1 226390430 226390485 -55803179 - LTR66 LTR ERVL -163 447 394 237 181 111 0 chr1 226390489 226390561 -55803103 - L1MC4 LINE L1 -1339 6703 6624 * 285 186 10 82 chr1 226390501 226390598 -55803066 + L1MC4 LINE L1 6614 6703 -1339 22 0 0 0 chr1 226390862 226390884 -55802780 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 226392159 226392183 -55801481 + AT_rich Low_complexity Low_complexity 1 24 0 1164 46 0 13 chr1 226392303 226392454 -55801210 - L1PA4 LINE L1 0 6155 6007 602 47 0 0 chr1 226392556 226392641 -55801023 - L1PA4 LINE L1 -145 6010 5926 935 113 0 14 chr1 226393749 226393882 -55799782 + Tigger3(Golem) DNA MER2_type 2747 2877 -152 1985 165 9 9 chr1 226393882 226394216 -55799448 - MER1B DNA MER1_type 0 339 6 890 204 0 12 chr1 226394205 226394372 -55799292 + Tigger3(Golem) DNA MER2_type 2864 3028 -1 * 712 339 78 5 chr1 226394413 226394847 -55798817 - L2 LINE L2 -1332 1982 1517 211 266 78 0 chr1 226394913 226394977 -55798687 - L2 LINE L2 -2079 1235 1167 29 28 0 0 chr1 226395971 226396007 -55797657 + AT_rich Low_complexity Low_complexity 1 36 0 203 156 44 0 chr1 226397221 226397266 -55796398 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 2222 85 10 7 chr1 226397385 226397680 -55795984 + AluSp SINE Alu 1 296 -17 2373 86 0 0 chr1 226397790 226398091 -55795573 - AluSg SINE Alu -9 301 1 250 318 9 0 chr1 226398413 226398520 -55795144 + L1MC/D LINE L1 5424 5531 -2277 405 232 40 0 chr1 226398521 226398646 -55795018 + (TA)n Simple_repeat Simple_repeat 2 131 0 304 351 54 50 chr1 226398747 226398969 -55794695 - L1MDb LINE L1 -5660 749 527 248 91 23 0 chr1 226399415 226399459 -55794205 + (TA)n Simple_repeat Simple_repeat 1 45 0 569 242 163 14 chr1 226400546 226400761 -55792903 + MIR SINE MIR 9 255 -7 182 167 0 24 chr1 226403252 226403294 -55790370 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 242 295 57 48 chr1 226403494 226403599 -55790065 - L2 LINE L2 -19 3253 3148 1407 218 30 24 chr1 226403880 226404219 -55789445 - MER58B DNA MER1_type 0 341 1 205 337 148 35 chr1 226404476 226404645 -55789019 + L2 LINE L2 2564 2751 -563 627 278 80 14 chr1 226404658 226404870 -55788794 + MIR SINE MIR 10 235 -27 295 303 83 18 chr1 226405089 226405198 -55788466 + L2 LINE L2 3149 3264 -8 519 172 78 8 chr1 226405696 226405824 -55787840 + L1MA4 LINE L1 6047 6183 -117 966 102 12 18 chr1 226405824 226405990 -55787674 - AluY SINE Alu -146 165 1 1552 185 18 0 chr1 226406711 226406997 -55786667 + AluSq SINE Alu 5 295 -18 308 333 17 17 chr1 226406999 226407116 -55786548 + L2 LINE L2 3156 3272 0 1565 182 4 0 chr1 226407524 226407793 -55785871 + AluSx SINE Alu 1 270 -42 318 231 130 37 chr1 226407917 226408025 -55785639 + L2 LINE L2 3195 3312 -1 1737 197 30 26 chr1 226408570 226409335 -55784329 - L1M4c LINE L1 -4071 2313 1454 1342 194 0 8 chr1 226409335 226409583 -55784081 - AluSx SINE Alu -13 299 54 490 92 13 0 chr1 226409583 226409659 -55784005 + L1P4 LINE L1 5607 5683 -483 526 202 39 0 chr1 226409673 226409802 -55783862 + L1MA4 LINE L1 6165 6298 -2 744 304 84 39 chr1 226410535 226410871 -55782793 + L3 LINE CR1 1146 1502 -75 1402 211 0 44 chr1 226410871 226411189 -55782475 - AluJo SINE Alu -8 304 1 744 304 84 39 chr1 226411189 226411233 -55782431 + L3 LINE CR1 1502 1543 -34 565 286 39 0 chr1 226411421 226411575 -55782089 - L2 LINE L2 -660 2654 2495 3228 134 25 91 chr1 226412024 226412717 -55780947 - L1MA9 LINE L1 -5 6307 5661 25 0 0 0 chr1 226413042 226413067 -55780597 + AT_rich Low_complexity Low_complexity 1 25 0 279 269 83 9 chr1 226413338 226413446 -55780218 - MIR SINE MIR -54 208 93 2045 100 3 23 chr1 226413447 226413747 -55779917 + AluY SINE Alu 1 294 -17 232 276 11 46 chr1 226414109 226414196 -55779468 - MIR SINE MIR -122 140 57 357 341 35 52 chr1 226414277 226414450 -55779214 - MLT1I LTR MaLR -142 267 98 379 328 156 22 chr1 226415403 226415717 -55777947 + L2 LINE L2 2952 3307 -6 476 224 67 37 chr1 226415725 226415859 -55777805 + MIR SINE MIR 97 234 -28 27 62 0 0 chr1 226416506 226416554 -55777110 + AT_rich Low_complexity Low_complexity 1 48 0 2297 75 3 0 chr1 226417187 226417481 -55776183 - AluY SINE Alu -16 295 1 269 316 114 9 chr1 226417540 226417654 -55776010 - MIR SINE MIR -105 157 32 440 321 151 36 chr1 226418220 226418525 -55775139 + L3 LINE CR1 1168 1507 -70 2230 113 3 0 chr1 226418897 226419206 -55774458 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 226419598 226419628 -55774036 + (TA)n Simple_repeat Simple_repeat 1 30 0 401 262 9 56 chr1 226419638 226419745 -55773919 + MIR SINE MIR 34 135 -73 224 213 16 33 chr1 226419841 226419902 -55773762 + CT-rich Low_complexity Low_complexity 5 64 0 323 261 169 15 chr1 226420580 226420635 -55773029 - MIR SINE MIR 0 262 217 306 73 0 0 chr1 226420635 226420676 -55772988 + (TA)n Simple_repeat Simple_repeat 2 42 0 323 261 169 15 chr1 226420676 226420750 -55772914 - MIR SINE MIR -45 217 113 1685 231 62 8 chr1 226421888 226422422 -55771242 - MER82 DNA MER2_type -1 652 58 854 283 28 12 chr1 226422453 226422704 -55770960 - MLT1C LTR MaLR -5 462 208 1764 185 3 0 chr1 226424819 226425116 -55768548 - AluSx SINE Alu -14 298 1 428 233 203 50 chr1 226426525 226426727 -55766937 + MIR SINE MIR 1 233 -29 28 29 0 0 chr1 226428084 226428119 -55765545 + AT_rich Low_complexity Low_complexity 1 35 0 671 271 124 51 chr1 226428269 226428778 -55764886 - L1ME3A LINE L1 0 6170 5625 1367 145 22 0 chr1 226428790 226429018 -55764646 + Tigger1 DNA MER2_type 2 234 -2184 10667 133 31 7 chr1 226429018 226430187 -55763477 + Tigger1 DNA MER2_type 672 1896 -522 1571 184 17 27 chr1 226430187 226430315 -55763349 + AluJo SINE Alu 1 129 -183 2109 131 0 3 chr1 226430315 226430621 -55763043 + AluSx SINE Alu 1 305 -7 1571 184 17 27 chr1 226430621 226430785 -55762879 + AluJo SINE Alu 129 290 -22 10667 133 31 7 chr1 226430785 226431321 -55762343 + Tigger1 DNA MER2_type 1896 2418 0 588 268 53 8 chr1 226431331 226431587 -55762077 - L1ME3A LINE L1 -576 5588 5320 293 285 94 55 chr1 226431705 226431961 -55761703 - L1ME3A LINE L1 -1016 5130 4865 1951 186 34 5 chr1 226431982 226432369 -55761295 - L1PA16 LINE L1 0 6166 5769 295 68 0 0 chr1 226432378 226432422 -55761242 - L1PA15 LINE L1 -11 6154 6111 1592 145 19 78 chr1 226432422 226432787 -55760877 - MER4A LTR ERV1 0 664 263 501 175 21 10 chr1 226432787 226432884 -55760780 - MER4A LTR ERV1 -566 98 1 5592 126 27 4 chr1 226432884 226434598 -55759066 - L1PA13 LINE L1 -47 6114 4796 228 240 67 0 chr1 226434616 226434691 -55758973 - L1ME3A LINE L1 -1302 4844 4765 489 242 45 6 chr1 226434731 226434888 -55758776 - L1M4 LINE L1 -893 5253 5091 2640 241 96 24 chr1 226434891 226436242 -55757422 - L1M4 LINE L1 -1104 5042 3790 679 133 44 0 chr1 226436242 226436355 -55757309 - L1MA5A LINE L1 -3 6294 6177 2640 241 96 24 chr1 226436355 226436366 -55757298 - L1M4 LINE L1 -2356 3790 3781 1996 157 0 0 chr1 226436366 226436671 -55756993 - AluJo SINE Alu -7 305 1 2640 241 96 24 chr1 226436671 226437362 -55756302 - L1M4 LINE L1 -2365 3781 2713 713 255 71 11 chr1 226437362 226437546 -55756118 + MER58A DNA MER1_type 1 195 -29 1159 249 42 59 chr1 226437546 226438023 -55755641 - L1MDb LINE L1 -5153 1256 788 184 306 129 16 chr1 226438514 226438638 -55755026 + MIR SINE MIR 74 211 -51 22 0 0 0 chr1 226445099 226445121 -55748543 + AT_rich Low_complexity Low_complexity 1 22 0 292 213 231 19 chr1 226445203 226445311 -55748353 + MER94 DNA DNA 4 134 0 314 322 86 7 chr1 226445564 226445716 -55747948 - MIR SINE MIR -62 200 37 799 336 144 34 chr1 226445806 226446983 -55746681 - L2 LINE L2 -5 3267 1916 562 201 132 13 chr1 226447107 226447266 -55746398 - MER5B DNA MER1_type 0 178 1 206 136 23 0 chr1 226447292 226447336 -55746328 + (TA)n Simple_repeat Simple_repeat 2 46 0 294 167 0 0 chr1 226447507 226447567 -55746097 + (TA)n Simple_repeat Simple_repeat 1 60 0 2549 97 16 8 chr1 226448035 226448415 -55745249 - LTR15 LTR ERV1 -6 487 105 24 32 0 0 chr1 226448793 226448824 -55744840 + AT_rich Low_complexity Low_complexity 1 31 0 2012 135 17 3 chr1 226449281 226449636 -55744028 + L1MA4 LINE L1 5941 6300 0 25 0 0 0 chr1 226450570 226450595 -55743069 + AT_rich Low_complexity Low_complexity 1 25 0 1090 131 12 0 chr1 226450726 226450894 -55742770 + Tigger1 DNA MER2_type 1 170 -2248 708 261 40 43 chr1 226452869 226453191 -55740473 - L1ME LINE L1 -582 5580 5260 513 336 87 17 chr1 226454894 226455135 -55738529 - MIR SINE MIR 0 262 5 617 265 147 0 chr1 226455366 226455536 -55738128 + MIR SINE MIR 12 206 -56 501 271 99 59 chr1 226456724 226457027 -55736637 - L2 LINE L2 -517 2797 2483 2263 86 0 13 chr1 226457212 226457514 -55736150 + AluY SINE Alu 1 298 -13 322 253 36 12 chr1 226457826 226457909 -55735755 - L2 LINE L2 0 3313 3229 24 0 0 0 chr1 226458059 226458083 -55735581 + AT_rich Low_complexity Low_complexity 1 24 0 267 177 63 0 chr1 226458281 226458360 -55735304 + CT-rich Low_complexity Low_complexity 2 85 0 1773 230 24 5 chr1 226458676 226459094 -55734570 - L1ME1 LINE L1 -9 6157 5732 965 339 171 25 chr1 226459094 226460127 -55733537 - L2 LINE L2 -1816 1498 315 2618 99 3 0 chr1 226460995 226461360 -55732304 - HERVL-B3 LTR ERVL -5288 366 1 1836 199 18 136 chr1 226461360 226461972 -55731692 - MLT2B3 LTR ERVL 0 554 15 1891 151 57 17 chr1 226461972 226462322 -55731342 - THE1B LTR MaLR 0 364 1 10564 109 21 22 chr1 226462322 226463904 -55729760 - THE1B-int LTR MaLR 0 1580 1 2101 135 49 9 chr1 226463906 226464254 -55729410 - THE1B LTR MaLR -2 362 1 926 210 5 15 chr1 226464272 226464472 -55729192 - MSTD LTR MaLR -198 198 1 3284 196 101 9 chr1 226464476 226464930 -55728734 + L1MB1 LINE L1 5254 5806 -383 15104 149 35 15 chr1 226464930 226467593 -55726071 + Tigger2 DNA MER2_type 1 2717 -1 3284 196 101 9 chr1 226467593 226467888 -55725776 + L1MB1 LINE L1 5806 6072 -117 971 229 133 30 chr1 226468019 226468416 -55725248 + L1ME3A LINE L1 5727 6164 -6 14676 160 64 14 chr1 226468478 226471244 -55722420 - L1PB1 LINE L1 -2 6865 4238 2348 72 0 28 chr1 226471244 226471564 -55722100 - AluY SINE Alu 0 311 1 14676 160 64 14 chr1 226471564 226472351 -55721313 - L1PB1 LINE L1 -2629 4238 3492 189 0 0 0 chr1 226472351 226472372 -55721292 + (TTG)n Simple_repeat Simple_repeat 1 21 0 14676 160 64 14 chr1 226472372 226472879 -55720785 - L1PB1 LINE L1 -3375 3492 3012 188 83 0 28 chr1 226472879 226472915 -55720749 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 14676 160 64 14 chr1 226472915 226473317 -55720347 - L1PB1 LINE L1 -3855 3012 2632 2033 122 7 0 chr1 226473317 226473615 -55720049 - AluSc SINE Alu 0 300 1 2002 121 3 39 chr1 226473624 226473930 -55719734 - AluSc SINE Alu -14 295 1 14676 160 64 14 chr1 226473930 226474934 -55718730 - L1PB1 LINE L1 -4242 2625 1673 4965 77 38 3 chr1 226474934 226475599 -55718065 + LTR12 LTR ERV1 1 688 0 14676 160 64 14 chr1 226475599 226476636 -55717028 - L1PB1 LINE L1 -5194 1673 3 374 234 32 48 chr1 226476664 226476788 -55716876 + L2 LINE L2 3189 3310 -3 30 45 0 0 chr1 226477531 226477575 -55716089 + AT_rich Low_complexity Low_complexity 1 44 0 506 194 31 16 chr1 226477941 226478070 -55715594 + MER94 DNA DNA 4 134 0 253 274 52 37 chr1 226479037 226479172 -55714492 - L1M3 LINE L1 -661 5510 5374 1950 263 132 4 chr1 226479845 226480612 -55713052 - L1ME3A LINE L1 -9 6161 5297 630 200 18 23 chr1 226480685 226480963 -55712701 + MER33 DNA MER1_type 1 322 -2 1305 201 37 20 chr1 226480964 226481258 -55712406 + AluJo SINE Alu 1 299 -13 34 24 0 0 chr1 226483465 226483506 -55710158 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr1 226484325 226484355 -55709309 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chr1 226484433 226484476 -55709188 + AT_rich Low_complexity Low_complexity 1 43 0 205 321 161 0 chr1 226484689 226484770 -55708894 + L3 LINE CR1 1392 1485 -92 1896 122 0 7 chr1 226485351 226485621 -55708043 - AluSx SINE Alu -12 300 33 1725 231 87 35 chr1 226485801 226486259 -55707405 + MLT1D LTR MaLR 21 502 -3 376 264 146 22 chr1 226486265 226486443 -55707221 + MIR SINE MIR 13 212 -50 2249 238 45 17 chr1 226486445 226487020 -55706644 - MLT1E LTR MaLR 0 593 3 26 50 0 0 chr1 226487046 226487086 -55706578 + AT_rich Low_complexity Low_complexity 1 40 0 636 89 30 0 chr1 226489027 226489128 -55704536 - L1MB4 LINE L1 0 6180 6077 334 263 123 18 chr1 226489465 226489792 -55703872 - L1ME4a LINE L1 -227 5894 5521 25 51 0 0 chr1 226489862 226489901 -55703763 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 226489977 226490005 -55703659 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr1 226490029 226490057 -55703607 + AT_rich Low_complexity Low_complexity 1 28 0 796 247 42 140 chr1 226490598 226490945 -55702719 + L2 LINE L2 2828 3121 -192 2700 91 6 0 chr1 226490945 226491307 -55702357 - THE1B LTR MaLR 0 364 1 796 247 42 140 chr1 226491307 226491416 -55702248 + L2 LINE L2 3121 3239 -74 613 98 0 0 chr1 226492059 226492151 -55701513 - L1PA8 LINE L1 0 6172 6081 1555 104 0 0 chr1 226492155 226492367 -55701297 - L1PA8A LINE L1 -490 5641 5430 * 2697 94 1 13 chr1 226492365 226492823 -55700841 + L1P LINE L1 4967 5419 -712 1564 151 93 0 chr1 226493370 226493628 -55700036 + AluJb SINE Alu 1 282 -30 183 246 18 35 chr1 226494290 226494347 -55699317 - L2 LINE L2 -303 2969 2914 2885 277 102 29 chr1 226494348 226496309 -55697355 - L1MEd LINE L1 -1930 4199 2094 210 71 0 0 chr1 226496410 226496438 -55697226 + (TA)n Simple_repeat Simple_repeat 1 28 0 22108 76 5 3 chr1 226496438 226500227 -55693437 - L1PA6 LINE L1 -16 6138 2323 694 267 10 10 chr1 226500230 226500432 -55693232 - L1P LINE L1 -5690 456 255 246 62 0 0 chr1 226500468 226500500 -55693164 + (TC)n Simple_repeat Simple_repeat 1 32 0 210 37 0 0 chr1 226500500 226500527 -55693137 + (TA)n Simple_repeat Simple_repeat 1 27 0 406 73 0 0 chr1 226500537 226500592 -55693072 + L1P3 LINE L1 10 64 -6397 486 240 104 116 chr1 226500595 226501127 -55692537 - L1MEd LINE L1 -4890 1229 753 2082 105 7 7 chr1 226501737 226502033 -55691631 - AluSx SINE Alu -16 296 1 24 0 0 0 chr1 226502220 226502244 -55691420 + AT_rich Low_complexity Low_complexity 1 24 0 258 309 96 11 chr1 226502315 226502409 -55691255 + L2 LINE L2 3207 3308 -5 820 246 36 0 chr1 226502425 226502592 -55691072 + MER44D DNA MER2_type 11 183 -522 * 2251 164 0 18 chr1 226502584 226502968 -55690696 + MER44D DNA MER2_type 357 605 0 1698 106 4 47 chr1 226505829 226506133 -55687531 - AluSx SINE Alu 0 332 40 22 0 0 0 chr1 226506699 226506721 -55686943 + AT_rich Low_complexity Low_complexity 1 22 0 219 288 15 15 chr1 226506764 226506830 -55686834 - L2 LINE L2 -6 3266 3201 345 272 26 18 chr1 226506966 226507080 -55686584 - Charlie8 DNA MER1_type -2163 254 140 338 328 8 34 chr1 226507366 226507485 -55686179 - L2 LINE L2 -27 3286 3171 557 327 109 49 chr1 226507649 226508264 -55685400 - L2 LINE L2 -375 2939 2288 697 107 0 49 chr1 226508265 226508387 -55685277 - AluSg/x SINE Alu -5 305 190 1340 274 73 17 chr1 226508421 226508833 -55684831 + LTR16A LTR ERVL 16 450 0 287 350 130 0 chr1 226508835 226509035 -55684629 - L2 LINE L2 -1029 2285 2060 210 295 150 62 chr1 226509059 226509243 -55684421 - L2 LINE L2 -1367 1947 1781 2233 121 13 0 chr1 226509243 226509550 -55684114 + AluSx SINE Alu 2 312 0 210 295 150 62 chr1 226509550 226509751 -55683913 - L2 LINE L2 -1533 1781 1528 183 261 14 0 chr1 226509818 226509887 -55683777 - L2 LINE L2 -1949 1365 1296 345 314 56 70 chr1 226510838 226511125 -55682539 - L1ME4a LINE L1 -105 6016 5734 232 234 16 16 chr1 226511128 226511192 -55682472 + CT-rich Low_complexity Low_complexity 2 65 0 863 208 10 36 chr1 226511782 226511940 -55681724 + L1MB3 LINE L1 5173 5326 -854 2029 126 0 0 chr1 226511940 226512246 -55681418 + AluSp SINE Alu 1 306 0 863 208 10 36 chr1 226512246 226512368 -55681296 + L1MB3 LINE L1 5326 5450 -730 * 1360 185 15 82 chr1 226512366 226512707 -55680957 + L1MB3 LINE L1 5857 6174 -9 22 0 0 0 chr1 226512949 226512971 -55680693 + AT_rich Low_complexity Low_complexity 1 22 0 558 278 91 40 chr1 226512982 226513562 -55680102 + L1M4 LINE L1 2576 3184 -2962 255 175 0 0 chr1 226514083 226514140 -55679524 + CT-rich Low_complexity Low_complexity 1 57 0 277 378 71 42 chr1 226514536 226514774 -55678890 + L2 LINE L2 2815 3059 -213 244 240 38 55 chr1 226514841 226515024 -55678640 + (TA)n Simple_repeat Simple_repeat 1 180 0 1505 154 18 0 chr1 226515077 226515350 -55678314 - L1MB1 LINE L1 -3 6165 5888 1674 198 7 0 chr1 226515656 226515939 -55677725 - AluJo SINE Alu -17 295 11 376 256 14 143 chr1 226515961 226516665 -55676999 + L1ME1 LINE L1 5640 6000 -166 2676 176 14 71 chr1 226516030 226516109 -55677555 + L1MA9 LINE L1 5706 5788 -524 1746 161 31 0 chr1 226516109 226516400 -55677264 + AluJo SINE Alu 11 310 -2 2676 176 14 71 chr1 226516400 226516964 -55676700 + L1MA9 LINE L1 5788 6312 0 1997 151 16 3 chr1 226517136 226517481 -55676183 + AluSx SINE Alu 3 351 0 230 250 100 71 chr1 226517730 226517870 -55675794 - L3 LINE CR1 -1080 497 354 5686 161 21 15 chr1 226518239 226519714 -55673950 + L1PA16 LINE L1 4698 6166 0 795 379 45 43 chr1 226519954 226520587 -55673077 - L2 LINE L2 -2086 1228 598 1778 133 102 40 chr1 226520587 226520755 -55672909 - THE1C LTR MaLR -1 374 218 234 0 0 0 chr1 226520755 226520781 -55672883 + (GA)n Simple_repeat Simple_repeat 1 26 0 1778 133 102 40 chr1 226520781 226520964 -55672700 - THE1C LTR MaLR -157 218 1 9285 138 21 34 chr1 226520964 226522563 -55671101 - THE1C-int LTR MaLR 0 1580 3 1786 148 40 50 chr1 226522565 226522944 -55670720 - THE1C LTR MaLR 0 375 1 795 379 45 43 chr1 226522944 226523301 -55670363 - L2 LINE L2 -2716 598 228 1796 176 0 0 chr1 226523301 226523585 -55670079 + AluJb SINE Alu 2 285 -27 795 379 45 43 chr1 226523585 226523731 -55669933 - L2 LINE L2 -3086 228 84 22 70 0 0 chr1 226525153 226525196 -55668468 + AT_rich Low_complexity Low_complexity 1 43 0 2104 125 0 16 chr1 226525433 226525746 -55667918 + AluSx SINE Alu 1 308 -4 1067 228 114 37 chr1 226526540 226526864 -55666800 - MLT1G1 LTR MaLR -2 593 245 535 285 82 65 chr1 226526956 226527310 -55666354 - MLT1J LTR MaLR -146 365 6 1533 152 168 9 chr1 226529213 226529529 -55664135 - LTR47A LTR ERVL -86 366 1 4496 170 68 55 chr1 226529544 226530222 -55663442 - MER4B-int LTR ERV1 -610 5721 5688 2250 81 0 3 chr1 226530222 226530505 -55663159 - AluY SINE Alu -29 282 1 4496 170 68 55 chr1 226530505 226531801 -55661863 - MER4B-int LTR ERV1 -643 5688 4410 681 157 0 17 chr1 226532155 226532270 -55661394 + FLAM_C SINE Alu 12 124 -19 312 27 0 0 chr1 226532273 226532310 -55661354 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 4179 194 26 17 chr1 226532597 226533708 -55659956 - L1MB8 LINE L1 0 6178 5057 609 101 22 0 chr1 226533767 226533856 -55659808 - AluSg/x SINE Alu -17 292 202 417 171 0 0 chr1 226534155 226534270 -55659394 + CT-rich Low_complexity Low_complexity 1 115 0 1626 203 3 3 chr1 226534273 226534568 -55659096 - AluSx SINE Alu -15 297 3 2541 43 7 3 chr1 226534788 226535090 -55658574 + AluY SINE Alu 1 303 -8 21 0 0 0 chr1 226535184 226535205 -55658459 + AT_rich Low_complexity Low_complexity 1 21 0 980 216 50 68 chr1 226535462 226535908 -55657756 + MSTD LTR MaLR 3 428 0 26 0 0 0 chr1 226536314 226536340 -55657324 + AT_rich Low_complexity Low_complexity 1 26 0 37 0 0 0 chr1 226536402 226536439 -55657225 + AT_rich Low_complexity Low_complexity 1 37 0 391 290 65 52 chr1 226536450 226536605 -55657059 - MIR SINE MIR -103 159 3 266 114 80 0 chr1 226536767 226536855 -55656809 + (TA)n Simple_repeat Simple_repeat 1 95 0 319 184 98 0 chr1 226536866 226537029 -55656635 + (TA)n Simple_repeat Simple_repeat 2 180 0 437 207 103 24 chr1 226637033 226637215 -55556449 - L1M3 LINE L1 -662 5518 5333 192 347 95 11 chr1 226637215 226637310 -55556354 - L2 LINE L2 -139 3133 3031 1288 205 12 18 chr1 226637373 226637704 -55555960 - L1M3 LINE L1 -799 5347 5019 1356 197 4 30 chr1 226637820 226638089 -55555575 - AluJo SINE Alu -11 301 40 220 398 10 36 chr1 226638539 226638735 -55554929 + L2 LINE L2 2719 2909 -405 2421 53 7 3 chr1 226638814 226639118 -55554546 + AluY SINE Alu 1 305 -6 232 241 253 0 chr1 226639126 226639209 -55554455 + MER5A DNA MER1_type 86 189 0 1756 167 0 14 chr1 226639656 226639938 -55553726 + AluJb SINE Alu 13 290 -22 240 287 50 0 chr1 226640881 226640982 -55552682 - MER112 DNA MER1_type -6 254 149 375 218 327 20 chr1 226641077 226641325 -55552339 + L1MD2 LINE L1 5998 6321 -38 206 189 0 19 chr1 226642569 226642622 -55551042 + CT-rich Low_complexity Low_complexity 1 52 0 12309 27 39 0 chr1 226643434 226645613 -55548051 + L1PA6 LINE L1 3927 6138 -16 33 25 0 0 chr1 226646464 226646504 -55547160 + AT_rich Low_complexity Low_complexity 1 40 0 201 116 0 47 chr1 226647115 226647158 -55546506 + (TA)n Simple_repeat Simple_repeat 2 42 0 353 174 33 54 chr1 226647159 226647251 -55546413 - L1MC4 LINE L1 -1339 6703 6614 222 62 0 0 chr1 226647252 226647284 -55546380 + (T)n Simple_repeat Simple_repeat 1 32 0 39 22 0 0 chr1 226647284 226647330 -55546334 + GC_rich Low_complexity Low_complexity 1 46 0 192 81 27 27 chr1 226647391 226647428 -55546236 + (CG)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr1 226648180 226648204 -55545460 + AT_rich Low_complexity Low_complexity 1 24 0 242 233 14 27 chr1 226648540 226648613 -55545051 - Charlie8 DNA MER1_type -989 1428 1357 226 339 98 0 chr1 226649704 226649816 -55543848 - L3 LINE CR1 -10 1567 1445 23 33 0 0 chr1 226650090 226650120 -55543544 + AT_rich Low_complexity Low_complexity 1 30 0 2380 84 0 3 chr1 226650607 226650905 -55542759 + AluSx SINE Alu 1 297 -15 354 246 0 18 chr1 226651867 226651981 -55541683 - FLAM_C SINE Alu -21 112 1 2487 97 0 0 chr1 226653200 226653511 -55540153 + AluSx SINE Alu 1 311 -1 236 144 56 33 chr1 226653620 226653710 -55539954 + (GTGTG)n Simple_repeat Simple_repeat 4 95 0 632 209 35 99 chr1 226653925 226654126 -55539538 - AluJo SINE Alu -124 188 1 2075 104 4 0 chr1 226654173 226654482 -55539182 - AluSg SINE Alu 0 310 1 5311 165 19 10 chr1 226654641 226655606 -55538058 + L1MB3 LINE L1 16 988 -6577 35 24 0 0 chr1 226656260 226656302 -55537362 + GC_rich Low_complexity Low_complexity 1 42 0 20449 90 7 21 chr1 226659102 226662253 -55531411 + L1P LINE L1 2078 5183 -963 2246 84 0 0 chr1 226662253 226662560 -55531104 + AluY SINE Alu 2 308 0 20449 90 7 21 chr1 226662560 226662622 -55531042 + L1P LINE L1 5183 5244 -902 7320 206 32 50 chr1 226662742 226663201 -55530463 + L1MB3 LINE L1 3559 4025 -3577 2111 148 0 0 chr1 226663201 226663506 -55530158 + AluSx SINE Alu 1 305 -7 7320 206 32 50 chr1 226663506 226666062 -55527602 + L1MB3 LINE L1 4025 6626 -976 1926 116 0 8 chr1 226666062 226666330 -55527334 + AluSx SINE Alu 39 304 -8 7320 206 32 50 chr1 226666330 226666341 -55527323 + L1MB3 LINE L1 6626 6636 -966 247 170 21 0 chr1 226666341 226666388 -55527276 + Alu SINE Alu 1 48 -85 7320 206 32 50 chr1 226666388 226667477 -55526187 + L1MB3 LINE L1 6636 7600 -2 190 299 171 0 chr1 226667841 226667958 -55525706 - MIR SINE MIR -2 260 124 539 212 0 0 chr1 226668278 226668377 -55525287 - L1ME3A LINE L1 -56 6114 6016 694 198 47 41 chr1 226668432 226668604 -55525060 - L1ME3A LINE L1 -400 5770 5598 2520 117 6 14 chr1 226668604 226668962 -55524702 + THE1A LTR MaLR 1 355 0 10630 86 10 2 chr1 226668962 226670356 -55523308 + THE1A-int LTR MaLR 1 1405 -175 1115 83 96 0 chr1 226670456 226670613 -55523051 + THE1A LTR MaLR 184 355 0 33 43 0 0 chr1 226671173 226671220 -55522444 + AT_rich Low_complexity Low_complexity 1 47 0 264 59 0 0 chr1 226671674 226671708 -55521956 + (GA)n Simple_repeat Simple_repeat 2 35 0 573 247 20 13 chr1 226672592 226672742 -55520922 + MIR SINE MIR 112 262 0 277 355 27 0 chr1 226672742 226672852 -55520812 + L3 LINE CR1 1406 1518 -59 448 284 27 20 chr1 226673164 226673312 -55520352 + L1MC/D LINE L1 5447 5595 -2213 439 128 23 0 chr1 226673997 226674083 -55519581 + CT-rich Low_complexity Low_complexity 3 90 0 1975 164 0 0 chr1 226674448 226674786 -55518878 - AluSx SINE Alu 0 338 1 490 213 124 49 chr1 226674904 226675129 -55518535 - L1MC5 LINE L1 -138 7823 7582 1394 183 49 92 chr1 226675188 226675636 -55518028 - L1MC5 LINE L1 -625 7336 6908 1096 93 0 25 chr1 226675636 226675797 -55517867 - AluSq SINE Alu -9 304 148 236 206 41 14 chr1 226675808 226675881 -55517783 + G-rich Low_complexity Low_complexity 2 76 0 1760 170 14 0 chr1 226675999 226676288 -55517376 - AluJo SINE Alu -19 293 1 349 301 186 13 chr1 226676872 226677098 -55516566 - MLT1K LTR MaLR -8 580 316 180 0 0 0 chr1 226677115 226677135 -55516529 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr1 226677840 226677865 -55515799 + AT_rich Low_complexity Low_complexity 1 25 0 341 336 123 47 chr1 226678540 226679117 -55514547 + L2 LINE L2 1910 2530 -784 206 259 0 19 chr1 226679259 226679313 -55514351 - L2 LINE L2 -16 3297 3245 302 261 59 194 chr1 226679326 226679717 -55513947 + L2 LINE L2 2935 3272 0 599 295 78 29 chr1 226681005 226681249 -55512415 + MIR SINE MIR 7 262 0 548 315 44 15 chr1 226681750 226682020 -55511644 - MLT1L LTR MaLR -8 607 330 1353 165 3 128 chr1 226682022 226682350 -55511314 + MSTB LTR MaLR 1 287 -139 974 196 9 18 chr1 226682450 226682669 -55510995 + L1MA9 LINE L1 6048 6264 -48 * 4453 198 22 16 chr1 226682663 226683561 -55510103 - L1M3e LINE L1 -4948 2082 1179 3654 196 166 17 chr1 226683696 226684753 -55508911 + L1M2a LINE L1 1 1269 -5822 234 196 20 0 chr1 226685826 226685877 -55507787 + L2 LINE L2 2288 2339 -975 664 311 233 11 chr1 226685943 226686680 -55506984 + L2 LINE L2 2291 3179 -134 210 143 0 0 chr1 226686681 226686716 -55506948 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 2063 65 4 0 chr1 226686718 226686966 -55506698 - AluY SINE Alu -19 292 44 197 278 0 0 chr1 226686983 226687019 -55506645 + L2 LINE L2 3149 3184 -88 1907 147 14 0 chr1 226687912 226688205 -55505459 - AluSx SINE Alu -15 297 1 1037 149 11 11 chr1 226689061 226689235 -55504429 + MSTB1 LTR MaLR 253 426 -6 1029 191 50 158 chr1 226689448 226689892 -55503772 + MSTD LTR MaLR 1 396 0 365 287 52 11 chr1 226689982 226690156 -55503508 - L1ME3A LINE L1 -208 5962 5782 275 241 44 36 chr1 226690469 226690606 -55503058 + L1PA4 LINE L1 6006 6143 -12 7313 52 23 3 chr1 226690626 226692219 -55501445 + L1PA7 LINE L1 4543 6154 0 22 0 0 0 chr1 226692871 226692893 -55500771 + AT_rich Low_complexity Low_complexity 1 22 0 926 259 40 16 chr1 226692932 226693183 -55500481 - MIR SINE MIR 0 262 6 468 316 75 0 chr1 226693181 226693355 -55500309 - MIR SINE MIR -61 201 15 * 439 106 0 0 chr1 226693626 226693692 -55499972 + MER41B LTR ERV1 482 547 -88 207 243 43 0 chr1 226693777 226693791 -55499873 + GA-rich Low_complexity Low_complexity 2 14 -60 1862 149 14 7 chr1 226693791 226694087 -55499577 + AluJb SINE Alu 1 298 -14 207 243 43 0 chr1 226694087 226694142 -55499522 + GA-rich Low_complexity Low_complexity 14 74 0 315 0 0 0 chr1 226694905 226694940 -55498724 + (CA)n Simple_repeat Simple_repeat 2 36 0 2427 119 36 30 chr1 226695169 226695531 -55498133 + THE1B LTR MaLR 1 364 0 366 282 53 53 chr1 226695688 226695858 -55497806 + L2 LINE L2 3109 3278 -35 24 32 0 0 chr1 226696478 226696509 -55497155 + AT_rich Low_complexity Low_complexity 1 31 0 261 119 0 0 chr1 226699795 226699837 -55493827 + (TG)n Simple_repeat Simple_repeat 2 43 0 249 108 0 0 chr1 226704677 226704714 -55488950 + (TCC)n Simple_repeat Simple_repeat 1 37 0 242 281 0 0 chr1 226704843 226704932 -55488732 + C-rich Low_complexity Low_complexity 1 89 0 222 260 0 0 chr1 226704952 226705052 -55488612 + C-rich Low_complexity Low_complexity 1 100 0 356 303 34 0 chr1 226705473 226705592 -55488072 + CT-rich Low_complexity Low_complexity 2 124 0 261 130 0 22 chr1 226706977 226707023 -55486641 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 31 0 0 chr1 226709436 226709468 -55484196 + AT_rich Low_complexity Low_complexity 1 32 0 322 315 9 9 chr1 226710664 226710772 -55482892 - L2 LINE L2 -7 3306 3199 3403 238 54 51 chr1 226710776 226711678 -55481986 + L1MC4 LINE L1 6750 7659 -383 387 0 0 0 chr1 226711678 226711721 -55481943 + (CA)n Simple_repeat Simple_repeat 1 43 0 3403 238 54 51 chr1 226711721 226712106 -55481558 + L1MC4 LINE L1 7659 8041 -1 197 298 132 8 chr1 226712437 226712558 -55481106 - L2 LINE L2 0 3272 3137 2309 94 0 3 chr1 226712654 226712952 -55480712 - AluSx SINE Alu -15 297 1 231 341 12 0 chr1 226713418 226713500 -55480164 - L2 LINE L2 0 3313 3231 194 286 172 74 chr1 226713798 226714123 -55479541 - L2 LINE L2 -785 2529 2173 362 294 111 0 chr1 226714379 226714505 -55479159 + MIR3 SINE MIR 19 158 -50 5048 163 17 16 chr1 226714748 226715207 -55478457 - L1MA7 LINE L1 -4 6287 5830 2133 91 10 32 chr1 226715207 226715516 -55478148 - AluSq SINE Alu -11 302 1 5048 163 17 16 chr1 226715516 226716161 -55477503 - L1MA7 LINE L1 -461 5830 5177 1363 134 24 0 chr1 226716160 226716413 -55477251 + L1MA7 LINE L1 4908 5166 -980 * 21 71 0 0 chr1 226716465 226716507 -55477157 + AT_rich Low_complexity Low_complexity 1 42 0 739 118 39 0 chr1 226716639 226716792 -55476872 + CT-rich Low_complexity Low_complexity 3 161 0 753 207 21 0 chr1 226716794 226716934 -55476730 - FLAM_C SINE Alu 0 143 1 554 216 116 47 chr1 226717256 226717488 -55476176 + LTR16A1 LTR ERVL 210 457 0 33 0 0 0 chr1 226717585 226717618 -55476046 + AT_rich Low_complexity Low_complexity 1 33 0 935 135 0 0 chr1 226717822 226717955 -55475709 - AluSq/x SINE Alu -180 133 1 529 271 82 0 chr1 226717955 226718125 -55475539 - MIR SINE MIR -59 203 20 227 37 0 0 chr1 226721369 226721396 -55472268 - MIR SINE MIR -18 244 218 204 138 0 0 chr1 226721370 226721399 -55472265 - L2 LINE L2 -25 3247 3219 * 1262 148 35 43 chr1 226721471 226721701 -55471963 + AluJo SINE Alu 84 311 -1 22 35 0 0 chr1 226722002 226722031 -55471633 + AT_rich Low_complexity Low_complexity 1 29 0 96 38 0 0 chr1 226722160 226722291 -55471373 + AT_rich Low_complexity Low_complexity 1 131 0 853 156 11 102 chr1 226722291 226722477 -55471187 - FRAM SINE Alu -12 164 1 311 204 47 81 chr1 226722629 226722801 -55470863 + L1ME4a LINE L1 5952 6117 -4 206 208 13 52 chr1 226722967 226723044 -55470620 + (CATA)n Simple_repeat Simple_repeat 2 75 0 230 273 146 107 chr1 226723215 226723420 -55470244 + L2 LINE L2 3025 3237 -35 489 204 12 90 chr1 226723668 226723835 -55469829 + MER106B DNA MER1_type 2 155 -904 255 156 31 16 chr1 226723838 226723902 -55469762 + (TTAAA)n Simple_repeat Simple_repeat 3 67 0 3851 191 48 11 chr1 226724781 226725740 -55467924 + L1MB8 LINE L1 5192 6178 0 251 321 124 72 chr1 226726978 226727686 -55465978 + L2 LINE L2 2381 3138 -134 379 301 130 0 chr1 226727848 226727994 -55465670 + MIR SINE MIR 2 166 -96 1785 176 0 0 chr1 226728280 226728569 -55465095 + AluJb SINE Alu 1 289 -23 245 333 21 0 chr1 226728580 226728676 -55464988 + MIR SINE MIR 57 154 -108 892 140 0 64 chr1 226728746 226728906 -55464758 - AluJo SINE Alu -26 286 136 180 0 0 0 chr1 226728906 226728926 -55464738 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 4009 154 65 14 chr1 226729047 226729912 -55463752 + L1MA9 LINE L1 5402 6310 -2 257 349 47 38 chr1 226730495 226730707 -55462957 + L2 LINE L2 2467 2680 -634 384 234 106 21 chr1 226731017 226731158 -55462506 + MLT1L LTR MaLR 124 276 -339 872 269 41 119 chr1 226731230 226731875 -55461789 + L1ME3A LINE L1 188 882 -1694 2511 74 0 0 chr1 226731875 226732186 -55461478 + AluY SINE Alu 1 311 0 872 269 41 119 chr1 226732186 226732312 -55461352 + L1ME3A LINE L1 882 1016 -1560 1905 147 16 104 chr1 226732312 226732754 -55460910 - MER57A LTR ERV1 0 403 1 872 269 41 119 chr1 226732754 226732990 -55460674 + L1ME3A LINE L1 1016 1269 -1307 774 208 0 0 chr1 226732990 226733120 -55460544 + FLAM_A SINE Alu 4 133 0 872 269 41 119 chr1 226733120 226733320 -55460344 + L1ME3A LINE L1 1269 1483 -1093 2004 133 0 32 chr1 226733320 226733629 -55460035 + AluSx SINE Alu 1 299 -13 872 269 41 119 chr1 226733629 226733971 -55459693 + L1ME3A LINE L1 1483 1715 -861 327 302 190 13 chr1 226734281 226734513 -55459151 + L1ME3A LINE L1 2035 2307 -4089 472 247 62 4 chr1 226734527 226734754 -55458910 + L1ME3A LINE L1 2291 2530 -3685 * 1284 283 74 37 chr1 226734752 226736365 -55457299 + L1ME3A LINE L1 4037 5705 -534 1848 148 45 3 chr1 226736382 226736713 -55456951 + MLT1A1 LTR MaLR 19 363 -2 475 215 54 13 chr1 226736809 226736958 -55456706 + L1ME3A LINE L1 5861 6015 -224 1778 144 134 36 chr1 226737128 226737516 -55456148 + MSTA LTR MaLR 3 428 0 11340 124 13 1 chr1 226737557 226739393 -55454271 + L1P3 LINE L1 1 1838 -4613 4185 49 2 14 chr1 226739493 226740064 -55453600 + L1P LINE L1 204 767 -5379 7760 16 5 0 chr1 226740099 226741650 -55452014 + L1PA3 LINE L1 4600 6154 -1 2904 173 43 38 chr1 226741651 226741778 -55451886 + L1M2 LINE L1 3572 3697 -2449 2089 122 0 0 chr1 226741778 226742081 -55451583 + AluSc SINE Alu 1 303 0 2904 173 43 38 chr1 226742081 226742632 -55451032 + L1M2 LINE L1 3697 4255 -1891 268 182 0 0 chr1 226742641 226742696 -55450968 - MLT1A1 LTR MaLR -12 384 330 1871 102 64 24 chr1 226742696 226742881 -55450783 - AluSp SINE Alu -1 312 109 3512 15 2 5 chr1 226742881 226743325 -55450339 - L1PA2 LINE L1 0 6155 5740 1871 102 64 24 chr1 226743325 226743434 -55450230 - AluSp SINE Alu -204 109 6 1091 225 36 52 chr1 226743440 226743747 -55449917 - MLT1A1 LTR MaLR -63 302 1 1866 165 1 14 chr1 226743750 226744194 -55449470 + L1M2 LINE L1 4252 5718 -456 2445 154 17 30 chr1 226744830 226745292 -55448372 + LTR32 LTR ERVL 15 470 -1 1356 76 178 0 chr1 226746677 226746902 -55446762 - Tigger2a DNA MER2_type -169 265 1 547 335 101 21 chr1 226746943 226747328 -55446336 - LTR16B LTR ERVL -12 452 37 5376 91 1 4 chr1 226747879 226748660 -55445004 + L1PA13 LINE L1 5384 6162 -1 2144 111 7 10 chr1 226748892 226749198 -55444466 - AluSp SINE Alu -8 305 1 466 287 13 57 chr1 226749421 226749651 -55444013 - MER102b DNA MER1_type 0 341 122 191 200 0 20 chr1 226749886 226749936 -55443728 + CT-rich Low_complexity Low_complexity 4 52 0 1868 112 3 24 chr1 226750620 226750916 -55442748 - L1PA16 LINE L1 -11 6155 5866 878 81 0 8 chr1 226750918 226751041 -55442623 + L1PA16 LINE L1 5762 5883 -283 266 250 7 140 chr1 226751235 226751371 -55442293 - L2 LINE L2 -5 3267 3150 723 136 8 0 chr1 226751377 226751502 -55442162 - MER3 DNA MER1_type -4 205 80 710 270 6 6 chr1 226751563 226751737 -55441927 - MER58A DNA MER1_type -44 180 7 247 164 15 30 chr1 226751852 226751919 -55441745 + MLT1F LTR MaLR 470 535 -7 412 369 54 29 chr1 226752015 226752256 -55441408 + L2 LINE L2 3018 3264 -8 1914 131 3 61 chr1 226752417 226752746 -55440918 + AluSx SINE Alu 1 310 -2 576 352 46 15 chr1 226753758 226754307 -55439357 + ERVL LTR ERVL 2481 3032 -1964 2088 128 3 0 chr1 226754337 226754625 -55439039 - AluSx SINE Alu -23 289 1 267 282 64 0 chr1 226754770 226754880 -55438784 + ERVL LTR ERVL 3235 3351 -2303 580 338 54 21 chr1 226754968 226755391 -55438273 + ERVL LTR ERVL 3421 3857 -1907 1086 310 48 29 chr1 226755915 226756148 -55437516 + L1MEc LINE L1 136 363 -6033 194 62 31 0 chr1 226756148 226756180 -55437484 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 1086 310 48 29 chr1 226756180 226756630 -55437034 + L1MEc LINE L1 363 832 -5564 461 281 92 10 chr1 226756884 226757030 -55436634 + L1MC5 LINE L1 6562 6695 -1117 1835 172 27 33 chr1 226757030 226757396 -55436268 + THE1B LTR MaLR 1 364 0 461 281 92 10 chr1 226757396 226757507 -55436157 + L1MC5 LINE L1 6695 6864 -948 555 67 0 27 chr1 226757559 226757634 -55436030 + Alu SINE Alu 2 74 -244 334 342 0 0 chr1 226757735 226757890 -55435774 + G-rich Low_complexity Low_complexity 1 155 0 24752 50 2 0 chr1 226757957 226761242 -55432422 - L1P LINE L1 -2233 3913 623 732 73 0 0 chr1 226761242 226761338 -55432326 - L1P LINE L1 -6050 96 1 2808 65 25 0 chr1 226761340 226761738 -55431926 - L1P LINE L1 -1593 4553 4146 424 126 115 23 chr1 226761738 226761825 -55431839 - MSTA LTR MaLR -280 95 1 987 146 12 0 chr1 226761835 226762006 -55431658 - L1MC3 LINE L1 -1786 5999 5827 410 277 47 34 chr1 226762033 226762181 -55431483 + L2 LINE L2 3160 3309 -4 2245 121 0 0 chr1 226762568 226762875 -55430789 + AluSq SINE Alu 1 307 -6 1495 249 104 6 chr1 226762901 226763411 -55430253 - L1ME3A LINE L1 -5 6165 5606 1217 208 65 99 chr1 226763551 226764116 -55429548 + MLT1D LTR MaLR 1 618 -8 1173 123 0 0 chr1 226764322 226764476 -55429188 - AluSg/x SINE Alu -24 288 135 386 145 26 0 chr1 226765533 226765609 -55428055 + (TATG)n Simple_repeat Simple_repeat 2 79 0 2946 238 30 41 chr1 226767012 226767929 -55425735 - L1ME3 LINE L1 -2 6160 5254 2180 124 3 0 chr1 226768012 226768318 -55425346 - AluSx SINE Alu -3 309 3 22 56 0 0 chr1 226768436 226768472 -55425192 + AT_rich Low_complexity Low_complexity 1 36 0 358 87 0 0 chr1 226768472 226768518 -55425146 + FLAM_A SINE Alu 63 108 -25 1846 217 77 99 chr1 226768535 226769305 -55424359 - Charlie2a DNA MER1_type -166 2696 1959 1006 107 59 27 chr1 226769305 226769492 -55424172 + L1MA8 LINE L1 6099 6291 0 1846 217 77 99 chr1 226769492 226769881 -55423783 - Charlie2a DNA MER1_type -903 1959 1563 3579 84 13 2 chr1 226769886 226770412 -55423252 - L1MA3 LINE L1 -7 6298 5767 8158 124 28 2 chr1 226770417 226771691 -55421973 - L1M1 LINE L1 -4916 2649 1343 2267 88 3 3 chr1 226771871 226772177 -55421487 - AluY SINE Alu -5 306 1 216 233 68 82 chr1 226772178 226772251 -55421413 - MIR SINE MIR -114 94 22 226 47 70 0 chr1 226772416 226772459 -55421205 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1509 174 30 4 chr1 226772462 226772726 -55420938 - AluJo SINE Alu -30 282 12 324 286 175 32 chr1 226774346 226774535 -55419129 + MIR SINE MIR 31 246 -16 780 199 123 14 chr1 226774839 226775050 -55418614 + MIR SINE MIR 29 262 0 423 249 196 19 chr1 226775099 226775308 -55418356 + MIR SINE MIR 2 247 -15 361 237 93 14 chr1 226775348 226775487 -55418177 - MER104 DNA Tc2 -26 154 5 247 271 74 66 chr1 226776998 226777120 -55416544 + L2 LINE L2 3191 3313 0 207 231 0 0 chr1 226777280 226777319 -55416345 + T-rich Low_complexity Low_complexity 1 39 0 559 192 20 7 chr1 226777320 226777466 -55416198 + CT-rich Low_complexity Low_complexity 2 149 0 1772 154 14 3 chr1 226777466 226777759 -55415905 - AluJb SINE Alu -16 296 1 403 357 131 8 chr1 226777973 226778371 -55415293 - LTR16A LTR ERVL -3 447 1 1722 174 0 46 chr1 226778410 226778737 -55414927 + AluJb SINE Alu 1 312 0 290 87 22 0 chr1 226778741 226778787 -55414877 + (GA)n Simple_repeat Simple_repeat 2 48 0 304 131 0 82 chr1 226778803 226778864 -55414800 + AluJb SINE Alu 74 129 -173 392 165 0 51 chr1 226778897 226778976 -55414688 + MER63 DNA MER1_type 530 604 -457 1513 203 52 0 chr1 226778992 226779144 -55414520 - AluJo SINE Alu -26 286 112 192 40 0 0 chr1 226779144 226779169 -55414495 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1513 203 52 0 chr1 226779169 226779287 -55414377 - AluJo SINE Alu -200 112 2 2267 164 22 67 chr1 226779289 226779784 -55413880 + MER63 DNA MER1_type 589 1061 0 480 293 26 26 chr1 226779786 226780017 -55413647 + L1MC/D LINE L1 5621 5849 -317 1872 139 3 21 chr1 226780094 226780382 -55413282 - AluJb SINE Alu -21 291 9 902 222 54 30 chr1 226780631 226781118 -55412546 + L1MC5 LINE L1 7249 7823 -138 26 64 0 0 chr1 226781297 226781344 -55412320 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr1 226782094 226782118 -55411546 + AT_rich Low_complexity Low_complexity 1 24 0 548 273 199 5 chr1 226782380 226782596 -55411068 + MIR SINE MIR 2 259 -3 30 0 0 0 chr1 226782657 226782687 -55410977 + AT_rich Low_complexity Low_complexity 1 30 0 1282 138 65 126 chr1 226782690 226783088 -55410576 - LTR7 LTR ERV1 -38 412 39 1256 208 30 4 chr1 226783591 226783860 -55409804 + MLT1C LTR MaLR 192 467 0 1273 87 0 0 chr1 226784241 226784414 -55409250 + AluY SINE Alu 139 311 0 707 200 56 6 chr1 226785407 226785587 -55408077 - Tigger2 DNA MER2_type -1 2717 2529 324 322 0 0 chr1 226785617 226785760 -55407904 + C-rich Low_complexity Low_complexity 1 143 0 869 132 0 11 chr1 226785761 226785943 -55407721 + (C)n Simple_repeat Simple_repeat 1 180 0 185 258 48 16 chr1 226786649 226786711 -55406953 + L2 LINE L2 3210 3273 -40 231 200 49 50 chr1 226786736 226786799 -55406865 - MIR SINE MIR -89 119 56 249 33 0 0 chr1 226787315 226787345 -55406319 + (GA)n Simple_repeat Simple_repeat 2 31 0 270 217 0 0 chr1 226792712 226792781 -55400883 + A-rich Low_complexity Low_complexity 1 69 0 200 59 29 0 chr1 226793120 226793154 -55400510 + (TTA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr1 226793942 226793970 -55399694 + AT_rich Low_complexity Low_complexity 1 28 0 192 77 0 0 chr1 226794070 226794096 -55399568 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 215 231 0 0 chr1 226797559 226797598 -55396066 + polypurine Low_complexity Low_complexity 4 42 0 34 42 0 0 chr1 226798694 226798742 -55394922 + AT_rich Low_complexity Low_complexity 1 48 0 2239 109 0 0 chr1 226799924 226800236 -55393428 - AluSc SINE Alu 0 309 1 742 169 8 0 chr1 226800768 226800898 -55392766 + FLAM_C SINE Alu 1 131 -2 216 0 0 0 chr1 226802325 226802349 -55391315 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2108 130 0 7 chr1 226802615 226802923 -55390741 + AluSx SINE Alu 1 306 -6 1528 153 81 0 chr1 226802999 226803260 -55390404 - MER7A DNA MER2_type 0 346 67 3064 90 2 50 chr1 226803260 226803661 -55390003 - L1PA13 LINE L1 -2 6161 5785 2268 116 0 0 chr1 226803661 226803963 -55389701 - AluSc SINE Alu -5 304 3 3064 90 2 50 chr1 226803963 226804037 -55389627 - L1PA13 LINE L1 -378 5785 5709 226 261 65 0 chr1 226804108 226804154 -55389510 - MER7A DNA MER2_type -296 52 4 32 0 0 0 chr1 226804176 226804208 -55389456 + AT_rich Low_complexity Low_complexity 1 32 0 831 128 8 23 chr1 226804437 226804570 -55389094 + FLAM_C SINE Alu 2 132 -1 183 222 16 63 chr1 226804572 226804635 -55389029 + MIR SINE MIR 16 75 -133 11479 50 1 6 chr1 226805333 226807545 -55386119 - L1P LINE L1 -3811 2335 1 480 92 85 0 chr1 226807563 226807704 -55385960 + (TA)n Simple_repeat Simple_repeat 2 154 0 6080 130 27 13 chr1 226807735 226808964 -55384700 - L1MA5 LINE L1 -49 6251 5011 23 0 0 0 chr1 226809511 226809534 -55384130 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 226809595 226809617 -55384047 + AT_rich Low_complexity Low_complexity 1 22 0 274 315 0 0 chr1 226809895 226809968 -55383696 - MIR3 SINE MIR -16 192 120 491 283 118 28 chr1 226810180 226810392 -55383272 - MIR SINE MIR -14 248 18 1270 187 7 53 chr1 226811002 226811286 -55382378 - AluJb SINE Alu -28 284 14 182 293 147 0 chr1 226811392 226811467 -55382197 - L2 LINE L2 -1938 1376 1291 456 285 36 0 chr1 226811743 226811908 -55381756 + Charlie1 DNA MER1_type 2562 2732 -29 216 135 0 0 chr1 226811917 226811954 -55381710 + (T)n Simple_repeat Simple_repeat 1 37 0 2054 134 7 0 chr1 226811974 226812281 -55381383 + AluSx SINE Alu 1 309 -3 373 216 52 30 chr1 226812907 226813041 -55380623 - MER31-int LTR ERV1 -3490 1446 1310 16490 107 20 17 chr1 226813719 226817656 -55376008 - L1PA8A LINE L1 -28 6103 2168 192 125 0 0 chr1 226818142 226818174 -55375490 + (T)n Simple_repeat Simple_repeat 1 32 0 238 353 62 62 chr1 226818236 226818494 -55375170 + L2 LINE L2 3008 3265 -7 24 32 0 0 chr1 226818904 226818935 -55374729 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr1 226819280 226819327 -55374337 + AT_rich Low_complexity Low_complexity 1 47 0 28 0 0 0 chr1 226819750 226819778 -55373886 + AT_rich Low_complexity Low_complexity 1 28 0 1952 206 148 21 chr1 226819921 226820405 -55373259 - MER52A LTR ERV1 -663 615 205 235 97 0 210 chr1 226820885 226820947 -55372717 - MER52C LTR ERV1 -1229 49 1 1150 211 84 19 chr1 226820947 226821374 -55372290 - L1 LINE L1 -2803 4364 3910 * 17439 208 26 36 chr1 226821367 226824099 -55369565 + L1PA15 LINE L1 841 3600 -4019 252 146 0 0 chr1 226824099 226824140 -55369524 + MER4E LTR ERV1 652 692 -74 17439 208 26 36 chr1 226824140 226826984 -55366680 + L1PA15 LINE L1 3600 6472 -1147 2218 104 3 3 chr1 226826984 226827283 -55366381 + AluSg SINE Alu 2 300 -10 17439 208 26 36 chr1 226827283 226827646 -55366018 + L1PA15 LINE L1 6472 6837 -782 192 97 0 0 chr1 226827646 226827677 -55365987 + (TCTCTG)n Simple_repeat Simple_repeat 5 35 0 17439 208 26 36 chr1 226827677 226827699 -55365965 + L1PA15 LINE L1 6837 6858 -761 1700 209 0 0 chr1 226827699 226828001 -55365663 - AluJb SINE Alu -10 302 1 17439 208 26 36 chr1 226828001 226828841 -55364823 + L1PA15 LINE L1 6858 7619 0 1856 257 34 25 chr1 226828848 226829405 -55364259 - L1 LINE L1 -3227 3940 3379 1274 117 0 0 chr1 226829405 226829576 -55364088 - AluSp SINE Alu -9 304 134 950 242 58 21 chr1 226829576 226830062 -55363602 - L1 LINE L1 -3787 3380 2875 * 4482 175 11 49 chr1 226830058 226830308 -55363356 + L1MA9 LINE L1 5363 5621 -691 2482 85 0 0 chr1 226830308 226830615 -55363049 + AluY SINE Alu 1 307 -4 4482 175 11 49 chr1 226830615 226830815 -55362849 + L1MA9 LINE L1 5621 5827 -485 1857 142 25 38 chr1 226830815 226831131 -55362533 + AluJb SINE Alu 1 312 0 4482 175 11 49 chr1 226831131 226831617 -55362047 + L1MA9 LINE L1 5827 6264 -48 * 7940 201 90 20 chr1 226831611 226833562 -55360102 - L1 LINE L1 -4948 2143 1 236 196 20 0 chr1 226834772 226834823 -55358841 + L2 LINE L2 2288 2339 -975 682 312 203 10 chr1 226834889 226835626 -55358038 + L2 LINE L2 2291 3179 -134 232 109 0 0 chr1 226835650 226835696 -55357968 + LTR66 LTR ERVL 394 439 -171 2067 60 4 0 chr1 226835702 226835950 -55357714 - AluY SINE Alu -19 292 44 200 278 0 0 chr1 226835967 226836003 -55357661 + L2 LINE L2 3149 3184 -88 1892 147 14 0 chr1 226836896 226837189 -55356475 - AluSx SINE Alu -15 297 1 233 237 40 0 chr1 226838198 226838274 -55355390 + HAL1 LINE L1 1801 1879 -628 24 32 0 0 chr1 226840234 226840265 -55353399 + AT_rich Low_complexity Low_complexity 1 31 0 2299 75 0 0 chr1 226840796 226841075 -55352589 + AluSc SINE Alu 23 301 -8 972 270 134 17 chr1 226841265 226842273 -55351391 + L1MEd LINE L1 532 1679 -4717 725 293 80 39 chr1 226842425 226842690 -55350974 + L1MEd LINE L1 1979 2232 -3983 1842 156 6 19 chr1 226842690 226843005 -55350659 - AluSx SINE Alu -1 311 1 725 293 80 39 chr1 226843005 226843557 -55350107 + L1MEd LINE L1 2232 2782 -3433 190 93 23 23 chr1 226843576 226843619 -55350045 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 185 307 148 20 chr1 226844439 226844540 -55349124 - MIR SINE MIR -71 191 78 191 250 62 0 chr1 226845105 226845153 -55348511 + MIR SINE MIR 118 168 -94 343 334 152 49 chr1 226846033 226846461 -55347203 - L1M2 LINE L1 -5605 1244 773 1764 159 14 10 chr1 226848568 226848857 -55344807 - AluJb SINE Alu -22 290 1 1988 137 0 3 chr1 226850191 226850484 -55343180 + AluSx SINE Alu 6 297 -15 888 132 0 10 chr1 226850486 226850796 -55342868 + (TA)n Simple_repeat Simple_repeat 2 308 0 821 129 0 0 chr1 226853126 226853266 -55340398 + (GGA)n Simple_repeat Simple_repeat 3 142 0 183 42 0 0 chr1 226853264 226853288 -55340376 + (CAG)n Simple_repeat Simple_repeat 2 25 0 * 519 288 48 0 chr1 226853297 226853443 -55340221 - MIR SINE MIR -22 240 88 2063 142 0 13 chr1 226854309 226854619 -55339045 + AluSx SINE Alu 1 306 -6 707 176 0 22 chr1 226855168 226855304 -55338360 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chr1 226856646 226856667 -55336997 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 525 301 100 13 chr1 226857042 226857281 -55336383 - MIR SINE MIR 0 262 3 210 234 21 0 chr1 226857440 226857487 -55336177 - L2 LINE L2 -2 3270 3223 396 257 71 9 chr1 226857837 226857950 -55335714 + L2 LINE L2 3186 3305 -8 23 0 0 0 chr1 226858107 226858130 -55335534 + AT_rich Low_complexity Low_complexity 1 23 0 1473 171 13 0 chr1 226858132 226858366 -55335298 - AluJo SINE Alu -67 245 9 268 225 141 0 chr1 226858373 226858444 -55335220 - L1M2 LINE L1 -624 5688 5608 * 1783 234 36 34 chr1 226858442 226858972 -55334692 + L1MA9 LINE L1 5752 6282 -30 1277 71 0 0 chr1 226858977 226859132 -55334532 + AluY SINE Alu 141 295 -16 29 28 0 0 chr1 226859463 226859499 -55334165 + AT_rich Low_complexity Low_complexity 1 36 0 1797 164 34 7 chr1 226860742 226861035 -55332629 - AluJo SINE Alu -11 301 1 26 30 0 0 chr1 226861389 226861422 -55332242 + AT_rich Low_complexity Low_complexity 1 33 0 2439 74 0 16 chr1 226861636 226861948 -55331716 - AluY SINE Alu -4 307 1 500 137 0 0 chr1 226861948 226862021 -55331643 - MER5A DNA MER1_type -113 76 4 44 46 0 0 chr1 226862200 226862265 -55331399 + AT_rich Low_complexity Low_complexity 1 65 0 30 45 0 0 chr1 226864372 226864416 -55329248 + AT_rich Low_complexity Low_complexity 1 44 0 31 44 0 0 chr1 226864827 226864872 -55328792 + AT_rich Low_complexity Low_complexity 1 45 0 666 246 117 57 chr1 226865255 226866023 -55327641 + L1MEd LINE L1 774 1608 -4521 301 204 63 49 chr1 226866042 226866205 -55327459 + L1M1 LINE L1 5651 5820 -334 683 281 63 13 chr1 226866259 226866497 -55327167 - L2 LINE L2 -444 2870 2621 350 173 0 25 chr1 226866568 226866649 -55327015 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 2342 71 0 0 chr1 226867835 226868132 -55325532 + AluY SINE Alu 2 298 -13 225 301 68 27 chr1 226868166 226868239 -55325425 + L2 LINE L2 3015 3090 -182 30 0 0 0 chr1 226868688 226868718 -55324946 + AT_rich Low_complexity Low_complexity 1 30 0 2087 118 0 3 chr1 226869039 226869336 -55324328 - AluSg SINE Alu -14 296 1 204 293 0 0 chr1 226871062 226871120 -55322544 + (CATA)n Simple_repeat Simple_repeat 4 61 0 408 294 113 23 chr1 226871268 226871445 -55322219 + MIR SINE MIR 20 212 -50 2162 110 25 27 chr1 226871725 226872090 -55321574 - THE1B LTR MaLR 0 364 1 2117 128 0 3 chr1 226872399 226872711 -55320953 + AluSx SINE Alu 1 311 -1 27 81 0 0 chr1 226872794 226872856 -55320808 + AT_rich Low_complexity Low_complexity 1 62 0 260 155 0 17 chr1 226873088 226873146 -55320518 + (TA)n Simple_repeat Simple_repeat 1 57 0 348 306 75 19 chr1 226874586 226874791 -55318873 - MIR3 SINE MIR -39 169 1 1972 140 10 7 chr1 226875068 226875376 -55318288 - AluSx SINE Alu -3 309 1 353 218 22 50 chr1 226875401 226875580 -55318084 + A-rich Low_complexity Low_complexity 2 175 0 1607 75 0 24 chr1 226875662 226875874 -55317790 + AluY SINE Alu 99 305 -6 26 30 0 0 chr1 226876088 226876121 -55317543 + AT_rich Low_complexity Low_complexity 1 33 0 1770 164 34 7 chr1 226876475 226876768 -55316896 + AluJo SINE Alu 1 301 -11 194 313 16 0 chr1 226878044 226878108 -55315556 - L3b LINE CR1 -200 1383 1319 315 265 130 37 chr1 226878225 226878387 -55315277 + MER5B DNA MER1_type 2 178 0 578 235 8 0 chr1 226879852 226879984 -55313680 - Charlie1 DNA MER1_type 0 2761 2629 * 866 256 39 4 chr1 226879974 226880204 -55313460 - Charlie1 DNA MER1_type -2519 242 5 677 255 83 80 chr1 226880382 226880684 -55312980 - MER102b DNA MER1_type -2 339 37 21 36 0 0 chr1 226881003 226881031 -55312633 + AT_rich Low_complexity Low_complexity 1 28 0 405 294 40 65 chr1 226881672 226881751 -55311913 + MIR SINE MIR 9 88 -174 1162 139 106 0 chr1 226881751 226881959 -55311705 + MER30 DNA MER1_type 1 230 0 405 294 40 65 chr1 226881959 226882080 -55311584 + MIR SINE MIR 88 204 -58 28 0 0 0 chr1 226883710 226883738 -55309926 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 226885157 226885178 -55308486 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 226885223 226885253 -55308411 + AT_rich Low_complexity Low_complexity 1 30 0 307 394 46 13 chr1 226886782 226887084 -55306580 - L2 LINE L2 -473 2841 2530 5071 147 29 28 chr1 226887084 226887756 -55305908 - L1MB1 LINE L1 0 6168 5502 180 77 0 0 chr1 226887756 226887782 -55305882 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 5071 147 29 28 chr1 226887782 226888282 -55305382 - L1MB1 LINE L1 -666 5502 5004 412 196 82 0 chr1 226889379 226889476 -55304188 + L2 LINE L2 3208 3312 -1 2196 136 11 37 chr1 226889760 226890134 -55303530 + THE1B LTR MaLR 1 364 0 5831 180 6 5 chr1 226890531 226891648 -55302016 - L1MB1 LINE L1 -1135 5011 3894 207 343 97 29 chr1 226891652 226891859 -55301805 - L2 LINE L2 -834 2480 2260 772 301 5 9 chr1 226891901 226892120 -55301544 - MIR SINE MIR -43 219 2 503 326 118 14 chr1 226892127 226892348 -55301316 - MIR SINE MIR 0 262 19 189 378 12 0 chr1 226892664 226892746 -55300918 - L2 LINE L2 -1339 1975 1893 638 121 10 0 chr1 226893479 226893578 -55300086 + HY3 scRNA scRNA 1 100 -1 2077 110 0 4 chr1 226894076 226894381 -55299283 - AluSg SINE Alu 0 306 3 642 250 89 45 chr1 226894837 226895061 -55298603 + MIR SINE MIR 10 243 -19 181 289 19 0 chr1 226895186 226895238 -55298426 - L2 LINE L2 -14 3258 3206 556 307 32 11 chr1 226895739 226895928 -55297736 + L2 LINE L2 2569 2761 -553 227 225 0 0 chr1 226895929 226895969 -55297695 + MER94 DNA DNA 1 40 -94 562 270 13 19 chr1 226895970 226896155 -55297509 - L1ME2 LINE L1 -3 6167 5990 223 309 55 27 chr1 226896303 226896413 -55297251 + L2 LINE L2 2746 2858 -456 22 0 0 0 chr1 226896996 226897018 -55296646 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr1 226897235 226897264 -55296400 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2558 58 0 7 chr1 226898914 226899224 -55294440 + AluY SINE Alu 1 308 -3 27 92 0 0 chr1 226899632 226899708 -55293956 + AT_rich Low_complexity Low_complexity 1 76 0 4254 124 1 9 chr1 226899841 226900509 -55293155 - L1PB1 LINE L1 -1 6150 5488 841 108 7 7 chr1 226900671 226900810 -55292854 - L1PB1 LINE L1 -664 5487 5349 641 187 15 30 chr1 226901013 226901147 -55292517 - FLAM_C SINE Alu -1 132 1 8594 163 77 47 chr1 226901156 226901661 -55292003 - L1MA8 LINE L1 -12 6279 5790 297 0 0 0 chr1 226901661 226901694 -55291970 + (TG)n Simple_repeat Simple_repeat 2 34 0 8594 163 77 47 chr1 226901694 226904249 -55289415 - L1MA8 LINE L1 -501 5790 3129 348 381 181 18 chr1 226904351 226904632 -55289032 + L2 LINE L2 2946 3272 0 634 14 0 0 chr1 226904760 226904834 -55288830 - L1P LINE L1 -1297 4849 4776 * 7680 23 0 0 chr1 226904832 226905769 -55287895 + L1HS LINE L1 5219 6155 0 312 111 0 0 chr1 226905770 226905824 -55287840 + (A)n Simple_repeat Simple_repeat 1 54 0 485 328 71 0 chr1 226906043 226906226 -55287438 - MIR SINE MIR -56 206 11 277 356 168 10 chr1 226906278 226906486 -55287178 + MIR SINE MIR 19 259 -3 228 143 0 0 chr1 226910964 226911006 -55282658 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 1326 192 63 22 chr1 226911006 226911277 -55282387 - AluJo SINE Alu -30 282 1 22 0 0 0 chr1 226911284 226911306 -55282358 + AT_rich Low_complexity Low_complexity 1 22 0 250 282 39 26 chr1 226911918 226911996 -55281668 - MER5A DNA MER1_type 0 189 111 1861 233 117 29 chr1 226913329 226913986 -55279678 + L1MEc LINE L1 26 740 -5656 711 202 97 19 chr1 226913981 226914238 -55279426 + L1MEc LINE L1 2761 3037 -3178 * 596 222 79 28 chr1 226914226 226914478 -55279186 + L1M4 LINE L1 5122 5386 -760 * 609 271 86 41 chr1 226914710 226915066 -55278598 - L2 LINE L2 -215 3098 2725 299 381 65 0 chr1 226915263 226915402 -55278262 - MIR3 SINE MIR -6 202 55 364 297 79 54 chr1 226916464 226916656 -55277008 + MIR SINE MIR 17 206 -56 334 313 88 51 chr1 226917114 226917331 -55276333 + L1MEc LINE L1 28 252 -6144 376 206 21 21 chr1 226917625 226917722 -55275942 + LTR40b LTR ERVL 1 97 -365 4011 101 12 161 chr1 226917864 226918337 -55275327 - Tigger1 DNA MER2_type 0 2418 1999 640 214 0 0 chr1 226918337 226918463 -55275201 + FLAM_A SINE Alu 1 126 -16 4011 101 12 161 chr1 226918463 226918769 -55274895 - Tigger1 DNA MER2_type -419 1999 1649 21 36 0 0 chr1 226918966 226918994 -55274670 + AT_rich Low_complexity Low_complexity 1 28 0 2035 101 39 32 chr1 226920199 226920507 -55273157 - AluSx SINE Alu 0 312 3 182 204 122 20 chr1 226921524 226921573 -55272091 + MIR3 SINE MIR 150 203 -5 795 294 79 12 chr1 226922507 226922837 -55270827 + L3 LINE CR1 511 862 -715 22 0 0 0 chr1 226922885 226922907 -55270757 + AT_rich Low_complexity Low_complexity 1 22 0 2402 110 0 0 chr1 226922910 226923246 -55270418 - L1PA8A LINE L1 -1 6130 5795 265 303 40 10 chr1 226923458 226923557 -55270107 + L3 LINE CR1 864 965 -612 305 238 138 56 chr1 226923668 226923828 -55269836 - L1ME4a LINE L1 -201 5920 5748 269 225 113 0 chr1 226923836 226923907 -55269757 + MER91C DNA MER1_type 1 79 -61 1534 179 0 4 chr1 226923989 226924257 -55269407 - L1PB4 LINE L1 -5 6151 5885 1996 138 0 0 chr1 226924447 226924743 -55268921 - AluSg SINE Alu -14 296 1 211 324 18 36 chr1 226924801 226924912 -55268752 + MIR3 SINE MIR 98 206 -2 536 286 7 0 chr1 226925030 226925170 -55268494 + Charlie1 DNA MER1_type 1 141 -2620 * 1091 194 66 0 chr1 226925167 226925394 -55268270 + Charlie1 DNA MER1_type 2208 2449 -312 289 244 33 0 chr1 226925392 226925482 -55268182 + Charlie1 DNA MER1_type 2641 2733 -28 * 324 311 103 68 chr1 226926874 226927301 -55266363 + L2 LINE L2 1033 1474 -1840 2568 119 34 19 chr1 226927677 226928087 -55265577 - MSTA LTR MaLR 0 428 13 2013 142 7 0 chr1 226928532 226928828 -55264836 + AluSx SINE Alu 2 299 -13 1320 145 14 0 chr1 226928851 226929065 -55264599 - L1PA15 LINE L1 -7 6158 5942 532 328 140 58 chr1 226929068 226929909 -55263755 + L2 LINE L2 2376 3268 -4 1003 164 38 6 chr1 226929954 226930137 -55263527 - MER5A DNA MER1_type 0 189 1 3902 128 17 63 chr1 226930214 226930924 -55262740 + LTR8 LTR ERV1 15 691 0 2500 121 29 5 chr1 226931234 226931655 -55262009 - MER57B LTR ERV1 0 434 4 1230 210 19 46 chr1 226932031 226932355 -55261309 + LTR8A LTR ERV1 413 727 0 1185 224 44 70 chr1 226934066 226934450 -55259214 + MLT1A2 LTR MaLR 1 374 0 327 215 168 19 chr1 226934649 226934756 -55258908 - L2 LINE L2 -1 3312 3190 1684 243 61 46 chr1 226934942 226935550 -55258114 - L2 LINE L2 -411 2903 2287 2429 258 92 5 chr1 226935562 226936352 -55257312 - L2 LINE L2 -1618 1696 838 252 311 42 8 chr1 226936696 226936815 -55256849 - L3b LINE CR1 -224 1359 1237 1423 174 8 4 chr1 226937911 226938164 -55255500 - L1MA7 LINE L1 -304 6008 5755 719 180 68 6 chr1 226938160 226938321 -55255343 + L1MA7 LINE L1 5986 6156 -135 * 278 208 28 208 chr1 226938836 226939014 -55254650 - MIR SINE MIR -3 259 114 23 68 0 0 chr1 226939132 226939176 -55254488 + AT_rich Low_complexity Low_complexity 1 44 0 1480 159 85 19 chr1 226939687 226939958 -55253706 - AluJb SINE Alu -23 289 1 180 0 0 0 chr1 226939997 226940017 -55253647 + (A)n Simple_repeat Simple_repeat 1 20 0 239 202 37 0 chr1 226940144 226940253 -55253411 + (TA)n Simple_repeat Simple_repeat 2 114 0 925 156 26 19 chr1 226940258 226940509 -55253155 + MER2 DNA MER2_type 27 317 -28 32 26 0 0 chr1 226940709 226940748 -55252916 + AT_rich Low_complexity Low_complexity 1 39 0 703 79 0 10 chr1 226940974 226941075 -55252589 + L1PA8A LINE L1 5841 5940 -191 477 267 20 0 chr1 226941169 226941270 -55252394 - MER119 DNA MER1_type -480 103 1 656 299 102 16 chr1 226941785 226942156 -55251508 + MLT1L LTR MaLR 150 552 -63 182 189 0 27 chr1 226942266 226942303 -55251361 + MER5A DNA MER1_type 128 163 -26 218 345 161 30 chr1 226942382 226942779 -55250885 - L2 LINE L2 -800 2514 2066 228 111 0 0 chr1 226943468 226943504 -55250160 + (TG)n Simple_repeat Simple_repeat 2 37 0 378 301 100 32 chr1 226948046 226948355 -55245309 + MER102a DNA MER1_type 1 330 0 223 261 0 0 chr1 226949168 226949214 -55244450 + polypyrimidine Low_complexity Low_complexity 1 46 0 369 0 0 0 chr1 226949217 226949258 -55244406 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 88 0 0 chr1 226949861 226949918 -55243746 + AT_rich Low_complexity Low_complexity 1 57 0 387 269 112 25 chr1 226950534 226950731 -55242933 + L1MC/D LINE L1 5188 5401 -745 527 313 33 14 chr1 226950795 226951009 -55242655 + L1MC/D LINE L1 5508 5725 -2083 336 153 111 0 chr1 226951009 226951081 -55242583 + L1MA8 LINE L1 6186 6265 -26 21 36 0 0 chr1 226951191 226951219 -55242445 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 226951326 226951358 -55242306 + AT_rich Low_complexity Low_complexity 1 32 0 587 228 15 44 chr1 226951450 226951586 -55242078 + L2 LINE L2 3182 3313 0 189 74 0 0 chr1 226951734 226951761 -55241903 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1756 120 112 0 chr1 226952137 226952413 -55241251 + AluSc SINE Alu 1 307 -2 1889 104 79 0 chr1 226952682 226952960 -55240704 - AluSc SINE Alu -9 300 1 245 264 114 29 chr1 226953323 226953463 -55240201 - L1ME4a LINE L1 -5 6116 5965 276 30 0 0 chr1 226955804 226955837 -55237827 + (TG)n Simple_repeat Simple_repeat 2 34 0 735 280 26 74 chr1 226956015 226956365 -55237299 - MER102b DNA MER1_type 0 341 9 331 335 164 14 chr1 226956508 226957007 -55236657 + L3 LINE CR1 295 868 -709 912 56 0 32 chr1 226957133 226957258 -55236406 + L1PA5 LINE L1 6019 6139 -15 286 279 239 17 chr1 226957306 226957474 -55236190 + MIR SINE MIR 2 205 -57 1308 246 125 89 chr1 226958835 226959501 -55234163 - HAL1 LINE L1 -604 1903 1181 731 24 0 0 chr1 226959501 226959585 -55234079 - L1PA7 LINE L1 -11 6143 6060 1308 246 125 89 chr1 226959585 226960007 -55233657 - HAL1 LINE L1 -1326 1181 776 268 339 62 48 chr1 226960105 226960332 -55233332 - HAL1 LINE L1 -2273 234 5 28 121 0 0 chr1 226960789 226960971 -55232693 + AT_rich Low_complexity Low_complexity 1 182 0 21 57 0 0 chr1 226961431 226961466 -55232198 + AT_rich Low_complexity Low_complexity 1 35 0 2774 157 48 29 chr1 226961558 226962146 -55231518 - L1MB3 LINE L1 -1 6182 5584 2089 193 79 38 chr1 226962270 226962672 -55230992 - L1MB3 LINE L1 -292 5891 5460 189 0 0 0 chr1 226962672 226962693 -55230971 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2089 193 79 38 chr1 226962693 226962819 -55230845 - L1MB3 LINE L1 -723 5460 5341 197 344 94 10 chr1 226962826 226962922 -55230742 - L2 LINE L2 -138 3134 3031 1409 209 12 18 chr1 226962985 226963320 -55230344 - L1MB3 LINE L1 -799 5347 5015 1304 197 4 30 chr1 226963432 226963701 -55229963 - AluJo SINE Alu -11 301 40 234 398 10 36 chr1 226964151 226964347 -55229317 + L2 LINE L2 2719 2909 -405 2505 33 0 3 chr1 226964426 226964725 -55228939 + AluY SINE Alu 1 298 -13 225 301 68 27 chr1 226964759 226964832 -55228832 + L2 LINE L2 3015 3090 -182 30 0 0 0 chr1 226965281 226965311 -55228353 + AT_rich Low_complexity Low_complexity 1 30 0 2087 118 0 3 chr1 226965632 226965929 -55227735 - AluSg SINE Alu -14 296 1 24881 23 0 0 chr1 226966264 226970962 -55222702 - L1HS LINE L1 -22 6133 1436 2306 231 32 0 chr1 226971062 226971629 -55222035 - L1 LINE L1 -773 5373 4789 2070 128 7 0 chr1 226973181 226973479 -55220185 - AluSq SINE Alu -13 300 1 244 195 0 37 chr1 226975020 226975102 -55218562 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 22 56 0 0 chr1 226975476 226975512 -55218152 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 226977292 226977313 -55216351 + AT_rich Low_complexity Low_complexity 1 21 0 206 266 0 31 chr1 226977623 226977687 -55215977 - MER5A DNA MER1_type 0 189 128 1917 112 4 8 chr1 226977690 226977958 -55215706 + AluSx SINE Alu 1 267 -45 23 54 0 0 chr1 226978190 226978227 -55215437 + AT_rich Low_complexity Low_complexity 1 37 0 28 61 0 0 chr1 226979102 226979151 -55214513 + AT_rich Low_complexity Low_complexity 1 49 0 204 227 80 53 chr1 226979356 226979431 -55214233 - MIR SINE MIR -120 142 66 354 234 221 83 chr1 226979957 226980190 -55213474 - L2 LINE L2 0 3313 3031 769 177 0 0 chr1 226980190 226980320 -55213344 - FLAM_A SINE Alu -3 130 1 354 234 221 83 chr1 226980320 226980376 -55213288 - L2 LINE L2 -282 3031 2984 466 309 20 13 chr1 226980486 226980638 -55213026 + MIR SINE MIR 110 262 0 2197 114 3 0 chr1 226980658 226980955 -55212709 - AluSq SINE Alu -15 298 1 2294 89 7 0 chr1 226981783 226982076 -55211588 + AluSx SINE Alu 2 296 -16 415 347 73 20 chr1 226984461 226984709 -55208955 - MIR SINE MIR 0 262 2 192 77 0 0 chr1 226985145 226985171 -55208493 + (T)n Simple_repeat Simple_repeat 1 26 0 1900 157 7 3 chr1 226985509 226985814 -55207850 + AluJo SINE Alu 2 307 -5 26 0 0 0 chr1 226985894 226985920 -55207744 + AT_rich Low_complexity Low_complexity 1 26 0 391 18 18 18 chr1 226986090 226986147 -55207517 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 1406 178 3 27 chr1 226986147 226986440 -55207224 - AluJb SINE Alu -16 286 1 1255 226 91 61 chr1 226986809 226987217 -55206447 - LTR41 LTR ERVL -6 767 348 233 252 219 0 chr1 226987321 226987440 -55206224 - LTR41 LTR ERVL -415 358 214 1032 232 115 31 chr1 226987505 226987828 -55205836 - LTR41 LTR ERVL -423 350 1 1098 298 59 14 chr1 226987979 226988405 -55205259 - ERVL LTR ERVL -387 5377 4933 376 326 95 46 chr1 226988790 226989180 -55204484 - L2 LINE L2 -437 2877 2469 282 235 35 12 chr1 226989284 226989369 -55204295 + (CATATA)n Simple_repeat Simple_repeat 3 89 0 37 69 0 0 chr1 226989390 226989462 -55204202 + AT_rich Low_complexity Low_complexity 1 72 0 379 342 25 25 chr1 226989707 226989865 -55203799 + MIR3 SINE MIR 44 201 -7 446 263 0 10 chr1 226990247 226990346 -55203318 + L2 LINE L2 3190 3287 -26 353 241 58 11 chr1 226990345 226990432 -55203232 + MIR SINE MIR 70 160 -102 * 1567 232 34 6 chr1 226990595 226990948 -55202716 + MLT1A1 LTR MaLR 3 365 0 2059 138 26 20 chr1 226990989 226991436 -55202228 - L1MC/D LINE L1 -730 5603 5153 221 56 0 28 chr1 226991443 226991479 -55202185 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 35123 36 1 2 chr1 226991479 226996565 -55197099 - L1PA3 LINE L1 -24 6131 1051 3329 203 25 9 chr1 226996552 226997324 -55196340 - L1MC/D LINE L1 -982 5164 4381 * 1306 183 67 8 chr1 226997308 226997576 -55196088 + L1MC1 LINE L1 6050 6333 0 * 642 300 70 8 chr1 226998712 226998955 -55194709 + MIR SINE MIR 2 259 -3 199 314 0 0 chr1 226999779 226999830 -55193834 + L2 LINE L2 2757 2807 -507 1235 285 93 12 chr1 226999929 227000442 -55193222 + L2 LINE L2 2757 3308 -5 22 0 0 0 chr1 227000444 227000466 -55193198 + AT_rich Low_complexity Low_complexity 1 22 0 361 303 14 42 chr1 227000652 227000794 -55192870 - MIR3 SINE MIR -6 202 65 275 312 77 72 chr1 227001021 227001242 -55192422 + L2 LINE L2 2301 2522 -792 27 29 0 0 chr1 227004895 227004929 -55188735 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr1 227005419 227005445 -55188219 + AT_rich Low_complexity Low_complexity 1 26 0 250 358 112 22 chr1 227005861 227005995 -55187669 - L2 LINE L2 0 3272 3127 340 22 0 0 chr1 227007068 227007114 -55186550 + AluY SINE Alu 260 305 -3 267 348 25 0 chr1 227008338 227008456 -55185208 + L2 LINE L2 3193 3313 0 32 0 0 0 chr1 227008479 227008511 -55185153 + AT_rich Low_complexity Low_complexity 1 32 0 260 307 27 0 chr1 227008599 227008674 -55184990 + L2 LINE L2 3231 3307 -6 497 108 0 36 chr1 227011397 227011480 -55182184 + MADE1 DNA Mariner 1 80 0 22 88 0 0 chr1 227011948 227012005 -55181659 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr1 227017335 227017356 -55176308 + AT_rich Low_complexity Low_complexity 1 21 0 201 226 57 19 chr1 227017678 227017731 -55175933 - MIR SINE MIR -99 163 109 202 324 39 20 chr1 227019746 227019848 -55173816 - MER5A DNA MER1_type -1 188 85 541 282 17 0 chr1 227019893 227020010 -55173654 - L2 LINE L2 0 3272 3154 290 278 90 32 chr1 227020600 227020815 -55172849 - MLT1J2 LTR MaLR -169 277 56 196 359 68 17 chr1 227021149 227021266 -55172398 - L2 LINE L2 -424 2890 2768 1060 202 133 0 chr1 227023064 227023359 -55170305 - MER33 DNA MER1_type -1 323 1 39 68 0 0 chr1 227023701 227023775 -55169889 + AT_rich Low_complexity Low_complexity 1 74 0 350 195 12 0 chr1 227024451 227024533 -55169131 + (TG)n Simple_repeat Simple_repeat 2 84 0 490 289 67 0 chr1 227025094 227025243 -55168421 + MIR SINE MIR 33 191 -71 272 374 47 0 chr1 227026655 227026762 -55166902 + MIR SINE MIR 34 145 -63 21 0 0 0 chr1 227027386 227027407 -55166257 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr1 227027997 227028037 -55165627 + AT_rich Low_complexity Low_complexity 1 40 0 405 302 104 16 chr1 227028752 227028970 -55164694 - MIR SINE MIR -5 257 15 2245 84 7 0 chr1 227029018 227029317 -55164347 - AluY SINE Alu -10 301 1 478 281 52 7 chr1 227030778 227030913 -55162751 + MIR SINE MIR 13 153 -109 25 0 0 0 chr1 227030954 227030979 -55162685 + AT_rich Low_complexity Low_complexity 1 25 0 3130 125 50 9 chr1 227033040 227033505 -55160159 + MER1A DNA MER1_type 46 529 0 181 255 78 0 chr1 227033510 227033561 -55160103 - L2 LINE L2 -63 3209 3155 873 232 59 43 chr1 227034098 227034469 -55159195 + LTR16A1 LTR ERVL 1 430 -27 198 380 47 16 chr1 227034488 227034617 -55159047 + L2 LINE L2 2340 2472 -842 1856 206 104 4 chr1 227034635 227035105 -55158559 - Charlie1b DNA MER1_type 0 523 7 25 31 0 0 chr1 227035835 227035867 -55157797 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr1 227035910 227035934 -55157730 + AT_rich Low_complexity Low_complexity 1 24 0 1630 175 0 4 chr1 227036183 227036451 -55157213 + AluJo SINE Alu 11 277 -35 1100 182 30 0 chr1 227036622 227036825 -55156839 + MER3 DNA MER1_type 1 209 0 26 50 0 0 chr1 227036957 227036997 -55156667 + AT_rich Low_complexity Low_complexity 1 40 0 360 289 48 0 chr1 227038711 227038815 -55154849 - L2 LINE L2 -15 3257 3149 291 194 107 117 chr1 227039061 227039164 -55154500 + L3 LINE CR1 1389 1490 -87 432 297 31 0 chr1 227039550 227039678 -55153986 + MIR SINE MIR 124 255 -7 23 0 0 0 chr1 227040012 227040035 -55153629 + AT_rich Low_complexity Low_complexity 1 23 0 329 320 79 35 chr1 227040454 227040682 -55152982 + L1MEd LINE L1 439 676 -5443 1887 103 3 68 chr1 227040769 227041079 -55152585 + AluY SINE Alu 22 311 0 606 277 72 46 chr1 227041079 227041578 -55152086 + L1MEd LINE L1 702 1213 -4906 405 278 97 0 chr1 227041716 227041892 -55151772 + HAL1 LINE L1 1454 1646 -861 665 239 5 27 chr1 227041913 227042101 -55151563 + MLT2C1 LTR ERVL 2 185 -212 659 184 38 51 chr1 227042133 227042291 -55151373 + AluJb SINE Alu 58 213 -99 563 28 0 0 chr1 227042294 227042366 -55151298 - L1PA6 LINE L1 0 6154 6083 25 75 0 0 chr1 227042398 227042451 -55151213 + AT_rich Low_complexity Low_complexity 1 53 0 1442 142 53 66 chr1 227042451 227042601 -55151063 - L1MA7 LINE L1 -6 6285 6136 2056 119 0 0 chr1 227042601 227042921 -55150743 + AluSx SINE Alu 1 320 0 1442 142 53 66 chr1 227042921 227043069 -55150595 - L1MA7 LINE L1 -155 6136 5988 26 88 0 0 chr1 227043110 227043178 -55150486 + AT_rich Low_complexity Low_complexity 1 68 0 377 252 36 65 chr1 227043191 227043330 -55150334 + MIR3 SINE MIR 71 205 -3 207 400 0 17 chr1 227044728 227044843 -55148821 + MIR SINE MIR 17 129 -133 14441 68 12 1 chr1 227045053 227047750 -55145914 - L1PA6 LINE L1 -3 6151 3434 3660 22 0 0 chr1 227047750 227048209 -55145455 + L1P LINE L1 2895 3353 -2793 * 5183 161 39 28 chr1 227048206 227049210 -55144454 - L1P LINE L1 -5131 1015 1 798 349 109 25 chr1 227049379 227050138 -55143526 - L2 LINE L2 -1 3271 2458 641 187 15 30 chr1 227050902 227051036 -55142628 - FLAM_C SINE Alu -1 132 1 8594 163 77 47 chr1 227051045 227051550 -55142114 - L1MA8 LINE L1 -12 6279 5790 297 0 0 0 chr1 227051550 227051583 -55142081 + (TG)n Simple_repeat Simple_repeat 2 34 0 8594 163 77 47 chr1 227051583 227054138 -55139526 - L1MA8 LINE L1 -501 5790 3129 348 381 181 18 chr1 227054240 227054521 -55139143 + L2 LINE L2 2946 3272 0 612 14 0 0 chr1 227054649 227054721 -55138943 - L1P LINE L1 -1297 4849 4778 7748 20 0 0 chr1 227054721 227055689 -55137975 + L1PA3 LINE L1 5219 6186 0 326 293 50 106 chr1 227056273 227056471 -55137193 + MER5A DNA MER1_type 2 188 -1 14473 122 36 28 chr1 227056489 227058883 -55134781 - Tigger1 DNA MER2_type -4 2414 1 285 357 66 33 chr1 227058886 227059158 -55134506 - L2 LINE L2 -32 3281 3001 * 3279 251 152 35 chr1 227059148 227060511 -55133153 - L2 LINE L2 -648 2666 1144 767 292 50 70 chr1 227060514 227060915 -55132749 + L2 LINE L2 2915 3307 -6 21 36 0 0 chr1 227062223 227062251 -55131413 + AT_rich Low_complexity Low_complexity 1 28 0 530 198 159 8 chr1 227062488 227062614 -55131050 + MER21A-int LTR ERV1 4047 4191 0 339 189 1 26 chr1 227062616 227062694 -55130970 + MER21A LTR ERV1 3 79 -784 769 177 0 0 chr1 227062984 227063114 -55130550 - FLAM_A SINE Alu -3 130 1 225 294 0 0 chr1 227063119 227063170 -55130494 - L2 LINE L2 -279 3034 2984 466 309 20 13 chr1 227063280 227063432 -55130232 + MIR SINE MIR 110 262 0 2197 114 3 0 chr1 227063452 227063749 -55129915 - AluSq SINE Alu -15 298 1 2294 89 7 0 chr1 227064577 227064870 -55128794 + AluSx SINE Alu 2 296 -16 415 347 73 20 chr1 227067255 227067503 -55126161 - MIR SINE MIR 0 262 2 192 77 0 0 chr1 227067939 227067965 -55125699 + (T)n Simple_repeat Simple_repeat 1 26 0 1900 157 7 3 chr1 227068303 227068608 -55125056 + AluJo SINE Alu 2 307 -5 26 0 0 0 chr1 227068688 227068714 -55124950 + AT_rich Low_complexity Low_complexity 1 26 0 391 18 18 18 chr1 227068884 227068941 -55124723 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 1406 178 3 27 chr1 227068941 227069234 -55124430 - AluJb SINE Alu -16 286 1 1255 226 91 61 chr1 227069603 227070011 -55123653 - LTR41 LTR ERVL -6 767 348 233 252 219 0 chr1 227070115 227070234 -55123430 - LTR41 LTR ERVL -415 358 214 1032 232 115 31 chr1 227070299 227070622 -55123042 - LTR41 LTR ERVL -423 350 1 1098 298 59 14 chr1 227070773 227071199 -55122465 - ERVL LTR ERVL -387 5377 4933 376 326 95 46 chr1 227071584 227071974 -55121690 - L2 LINE L2 -437 2877 2469 282 235 35 12 chr1 227072078 227072163 -55121501 + (CATATA)n Simple_repeat Simple_repeat 3 89 0 37 69 0 0 chr1 227072184 227072256 -55121408 + AT_rich Low_complexity Low_complexity 1 72 0 379 342 25 25 chr1 227072501 227072659 -55121005 + MIR3 SINE MIR 44 201 -7 446 263 0 10 chr1 227073041 227073140 -55120524 + L2 LINE L2 3190 3287 -26 353 241 58 11 chr1 227073139 227073226 -55120438 + MIR SINE MIR 70 160 -102 * 1543 229 34 8 chr1 227073389 227073743 -55119921 + MLT1A1 LTR MaLR 3 365 0 1981 135 29 24 chr1 227073784 227074232 -55119432 - L1MC/D LINE L1 -730 5603 5153 221 56 0 28 chr1 227074239 227074275 -55119389 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6583 32 0 0 chr1 227074275 227075052 -55118612 - L1PA3 LINE L1 -24 6131 5355 * 16170 24 0 0 chr1 227075049 227076963 -55116701 + L1PA3 LINE L1 3453 5366 -780 1282 133 0 0 chr1 227078122 227078318 -55115346 - Tigger7 DNA MER2_type -2 2485 2290 491 250 9 0 chr1 227078316 227078428 -55115236 - Tigger7 DNA MER2_type -569 136 24 * 486 227 0 0 chr1 227078840 227078972 -55114692 + GA-rich Low_complexity Low_complexity 1 132 0 300 27 0 0 chr1 227078974 227079011 -55114653 + (AGATG)n Simple_repeat Simple_repeat 4 40 0 2286 64 14 14 chr1 227079570 227079866 -55113798 + AluY SINE Alu 3 298 -13 994 182 45 0 chr1 227080291 227080489 -55113175 + L1MA9 LINE L1 6068 6274 -38 1091 183 5 0 chr1 227080610 227080823 -55112841 + L1MA7 LINE L1 6056 6269 -22 22 0 0 0 chr1 227080842 227080864 -55112800 + AT_rich Low_complexity Low_complexity 1 22 0 255 338 26 0 chr1 227081363 227081440 -55112224 + L2 LINE L2 3201 3279 -34 234 0 0 0 chr1 227081466 227081492 -55112172 + (T)n Simple_repeat Simple_repeat 1 26 0 1443 163 178 23 chr1 227081549 227081892 -55111772 + MSTD LTR MaLR 1 396 0 332 361 39 6 chr1 227081937 227082117 -55111547 + MIR3 SINE MIR 10 195 -13 218 227 23 0 chr1 227082521 227082565 -55111099 + L2 LINE L2 3136 3180 -92 42 71 0 0 chr1 227083046 227083130 -55110534 + AT_rich Low_complexity Low_complexity 1 84 0 205 211 18 18 chr1 227083279 227083336 -55110328 + (CATA)n Simple_repeat Simple_repeat 4 60 0 375 327 52 0 chr1 227084529 227084682 -55108982 - MIR SINE MIR -11 251 91 22 56 0 0 chr1 227085127 227085163 -55108501 + AT_rich Low_complexity Low_complexity 1 36 0 280 268 27 89 chr1 227085264 227085376 -55108288 + L2 LINE L2 3207 3311 -2 246 32 0 0 chr1 227085727 227085758 -55107906 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 691 144 0 34 chr1 227085761 227085879 -55107785 - AluSg/x SINE Alu -29 283 170 664 64 64 23 chr1 227085995 227086166 -55107498 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 27 49 0 0 chr1 227086166 227086207 -55107457 + AT_rich Low_complexity Low_complexity 1 41 0 605 96 72 6 chr1 227086208 227086374 -55107290 + (TA)n Simple_repeat Simple_repeat 1 177 0 1987 100 57 4 chr1 227086418 227086697 -55106967 - AluSg SINE Alu -16 294 1 22 0 0 0 chr1 227087422 227087444 -55106220 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 227088126 227088164 -55105500 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr1 227088570 227088600 -55105064 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr1 227088756 227088786 -55104878 + AT_rich Low_complexity Low_complexity 1 30 0 264 342 137 37 chr1 227091228 227092046 -55101618 - L2 LINE L2 -1115 2199 1300 207 213 21 0 chr1 227092764 227092811 -55100853 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 22 0 0 0 chr1 227093211 227093233 -55100431 + AT_rich Low_complexity Low_complexity 1 22 0 285 336 56 16 chr1 227093483 227093608 -55100056 - L2 LINE L2 -6 3266 3137 480 279 144 14 chr1 227093640 227093855 -55099809 - MIR SINE MIR -15 247 5 5415 152 17 21 chr1 227094095 227095464 -55098200 - L1PA16 LINE L1 -18 6148 4797 2105 101 27 14 chr1 227095599 227095895 -55097769 - AluSc SINE Alu -9 300 1 432 0 0 0 chr1 227096304 227096352 -55097312 + (TG)n Simple_repeat Simple_repeat 2 49 0 267 271 198 10 chr1 227098109 227098205 -55095459 - L2 LINE L2 -1 3312 3199 306 0 0 0 chr1 227099340 227099374 -55094290 + (TG)n Simple_repeat Simple_repeat 2 35 0 572 227 87 74 chr1 227099527 227099635 -55094029 - MIR SINE MIR 0 262 157 3167 31 21 0 chr1 227099635 227100020 -55093644 - L1PA4 LINE L1 0 6155 5763 572 227 87 74 chr1 227100020 227100140 -55093524 - MIR SINE MIR -105 157 31 374 356 48 26 chr1 227101915 227102145 -55091519 - MIR SINE MIR 0 262 28 774 206 0 0 chr1 227103185 227103331 -55090333 - FRAM SINE Alu -30 146 1 679 161 0 88 chr1 227105104 227105175 -55088489 - MER30 DNA MER1_type 0 230 175 2370 91 0 0 chr1 227105175 227105472 -55088192 - AluSx SINE Alu -15 297 1 679 161 0 88 chr1 227105472 227105537 -55088127 - MER30 DNA MER1_type -55 175 106 399 138 7 53 chr1 227105537 227105689 -55087975 + CT-rich Low_complexity Low_complexity 4 148 0 954 167 0 0 chr1 227105817 227105997 -55087667 + CT-rich Low_complexity Low_complexity 1 180 0 813 126 0 0 chr1 227105997 227106116 -55087548 - MER30 DNA MER1_type -111 119 1 282 461 0 17 chr1 227106289 227106467 -55087197 + L2 LINE L2 2879 3053 -219 25 31 0 0 chr1 227106772 227106804 -55086860 + AT_rich Low_complexity Low_complexity 1 32 0 1973 131 3 0 chr1 227107454 227107736 -55085928 + AluSx SINE Alu 1 283 -29 246 32 0 0 chr1 227107739 227107770 -55085894 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 280 268 27 89 chr1 227108121 227108233 -55085431 - L2 LINE L2 -2 3311 3207 22 56 0 0 chr1 227108334 227108370 -55085294 + AT_rich Low_complexity Low_complexity 1 36 0 375 327 52 0 chr1 227108815 227108968 -55084696 + MIR SINE MIR 91 251 -11 205 211 18 18 chr1 227110162 227110219 -55083445 + (TATG)n Simple_repeat Simple_repeat 4 60 0 42 71 0 0 chr1 227110368 227110452 -55083212 + AT_rich Low_complexity Low_complexity 1 84 0 218 227 23 0 chr1 227110933 227110977 -55082687 - L2 LINE L2 -92 3180 3136 308 369 45 6 chr1 227111381 227111560 -55082104 - MIR3 SINE MIR -13 195 10 1413 163 177 26 chr1 227111605 227111949 -55081715 - MSTD LTR MaLR 0 396 1 234 0 0 0 chr1 227112006 227112032 -55081632 + (A)n Simple_repeat Simple_repeat 1 26 0 265 325 26 0 chr1 227112058 227112135 -55081529 - L2 LINE L2 -34 3279 3201 22 0 0 0 chr1 227112633 227112655 -55081009 + AT_rich Low_complexity Low_complexity 1 22 0 1091 183 5 0 chr1 227112674 227112887 -55080777 - L1MA7 LINE L1 -22 6269 6056 994 182 45 0 chr1 227113008 227113206 -55080458 - L1MA9 LINE L1 -38 6274 6068 2286 64 14 14 chr1 227113631 227113927 -55079737 - AluY SINE Alu -13 298 3 300 27 0 0 chr1 227114486 227114523 -55079141 + (CATCT)n Simple_repeat Simple_repeat 4 40 0 486 227 0 0 chr1 227114525 227114657 -55079007 + CT-rich Low_complexity Low_complexity 1 132 0 491 250 9 0 chr1 227115069 227115181 -55078483 + Tigger7 DNA MER2_type 24 136 -597 * 1282 133 0 0 chr1 227115179 227115375 -55078289 + Tigger7 DNA MER2_type 2390 2585 -2 16170 24 0 0 chr1 227116534 227118448 -55075216 - L1HS LINE L1 -780 5366 3453 7113 8 0 0 chr1 227118445 227119246 -55074418 + L1HS LINE L1 5355 6155 0 * 321 109 0 0 chr1 227119247 227119302 -55074362 + (A)n Simple_repeat Simple_repeat 1 55 0 485 328 71 0 chr1 227119521 227119704 -55073960 - MIR SINE MIR -56 206 11 277 356 168 10 chr1 227119756 227119964 -55073700 + MIR SINE MIR 19 259 -3 348 259 0 0 chr1 227121282 227121390 -55072274 + (CA)n Simple_repeat Simple_repeat 1 108 0 310 264 35 0 chr1 227121397 227121484 -55072180 - L1MC4 LINE L1 -1339 6703 6614 2638 14 3 0 chr1 227121816 227122111 -55071553 - AluYa5 SINE Alu -15 296 1 23 54 0 0 chr1 227122465 227122502 -55071162 + AT_rich Low_complexity Low_complexity 1 37 0 1774 116 4 0 chr1 227123108 227123350 -55070314 + AluSp SINE Alu 1 243 -70 24 67 0 0 chr1 227123642 227123687 -55069977 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr1 227125451 227125481 -55068183 + AT_rich Low_complexity Low_complexity 1 30 0 376 228 39 47 chr1 227126230 227126357 -55067307 + MIR SINE MIR 68 193 -69 363 225 121 88 chr1 227126514 227128077 -55065587 - L1MCa LINE L1 -5068 1355 6 367 293 86 56 chr1 227128677 227128909 -55064755 + MIR SINE MIR 7 245 -17 25 31 0 0 chr1 227129014 227129046 -55064618 + AT_rich Low_complexity Low_complexity 1 32 0 296 250 11 45 chr1 227129108 227129196 -55064468 + MIR SINE MIR 80 164 -98 188 189 0 0 chr1 227130569 227130606 -55063058 + L2 LINE L2 3277 3313 0 621 285 105 100 chr1 227130910 227131261 -55062403 + L2 LINE L2 2920 3272 0 582 232 185 72 chr1 227131428 227131790 -55061874 - LTR37A LTR ERV1 -3 423 21 363 279 42 73 chr1 227132047 227132321 -55061343 - LTR49-int LTR ERV1 -931 5400 3831 231 360 10 10 chr1 227132555 227132655 -55061009 - L2 LINE L2 -32 3240 3141 207 0 0 0 chr1 227132744 227132767 -55060897 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 273 368 40 24 chr1 227132958 227133083 -55060581 - L2 LINE L2 -526 2788 2662 187 294 59 0 chr1 227133730 227133781 -55059883 - L2 LINE L2 -220 3052 2999 25 31 0 0 chr1 227133798 227133830 -55059834 + AT_rich Low_complexity Low_complexity 1 32 0 789 265 25 13 chr1 227135723 227135961 -55057703 + L1MC4 LINE L1 6750 6990 -1052 760 232 8 42 chr1 227135983 227136220 -55057444 - L1MC5 LINE L1 -50 7911 7683 884 277 57 79 chr1 227136229 227137143 -55056521 + L1MC5 LINE L1 6882 7775 -186 424 298 124 19 chr1 227137153 227137314 -55056350 + MER5A DNA MER1_type 10 187 -2 277 202 58 58 chr1 227137315 227137419 -55056245 + L1MC5 LINE L1 7767 7870 -91 332 307 63 29 chr1 227137906 227138111 -55055553 + L1MC4 LINE L1 6760 6971 -1071 26 50 0 0 chr1 227138219 227138259 -55055405 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr1 227141049 227141086 -55052578 + AT_rich Low_complexity Low_complexity 1 37 0 3540 161 99 9 chr1 227141124 227141803 -55051861 - L1MC3 LINE L1 -1 7784 7045 251 271 56 56 chr1 227143361 227143468 -55050196 - L2 LINE L2 -5 3308 3202 405 0 0 0 chr1 227143498 227143543 -55050121 + (TAA)n Simple_repeat Simple_repeat 2 46 0 2221 112 133 5 chr1 227147042 227147417 -55046247 + MSTA LTR MaLR 6 428 0 222 223 27 179 chr1 227147466 227147534 -55046130 - MER5A DNA MER1_type -4 185 139 282 106 0 0 chr1 227147534 227147581 -55046083 + (CA)n Simple_repeat Simple_repeat 2 48 0 222 223 27 179 chr1 227147581 227147624 -55046040 - MER5A DNA MER1_type -50 139 91 * 384 319 42 14 chr1 227147614 227147758 -55045906 - MIR SINE MIR -96 166 19 462 111 11 22 chr1 227147964 227148054 -55045610 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 268 24 49 0 chr1 227148561 227148602 -55045062 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 350 217 39 8 chr1 227148608 227148737 -55044927 + (TA)n Simple_repeat Simple_repeat 2 134 0 450 204 0 0 chr1 227148925 227149028 -55044636 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 719 287 51 0 chr1 227149428 227149665 -55043999 - L1ME1 LINE L1 -5 6230 5982 997 194 82 37 chr1 227149683 227150092 -55043572 - L1ME1 LINE L1 -675 5560 5135 2877 267 78 40 chr1 227150092 227152519 -55041145 - L1ME1 LINE L1 -2299 3916 1431 2061 278 101 22 chr1 227152517 227152585 -55041079 - L1ME1 LINE L1 -5312 1084 1023 * 186 43 0 0 chr1 227152585 227152608 -55041056 + (TG)n Simple_repeat Simple_repeat 2 24 0 2061 278 101 22 chr1 227152608 227153474 -55040190 - L1ME1 LINE L1 -5373 1023 77 2313 94 0 3 chr1 227153492 227153801 -55039863 - AluSq SINE Alu -5 308 1 2205 162 81 2 chr1 227153828 227154223 -55039441 + MSTB LTR MaLR 1 426 0 315 390 51 20 chr1 227154663 227154858 -55038806 + L1MEd LINE L1 255 455 -5664 281 350 0 0 chr1 227155648 227155728 -55037936 + L2 LINE L2 3184 3263 -9 24 0 0 0 chr1 227156296 227156320 -55037344 + AT_rich Low_complexity Low_complexity 1 24 0 14252 207 18 18 chr1 227157019 227163096 -55030568 - L1PB2 LINE L1 -7 6201 8 3428 216 17 30 chr1 227163063 227163875 -55029789 - L1PBa LINE L1 -5219 985 184 * 2189 103 3 3 chr1 227164101 227164403 -55029261 - AluSc SINE Alu -7 302 1 2161 110 0 0 chr1 227166231 227166548 -55027116 + AluSx SINE Alu 1 317 0 21 0 0 0 chr1 227167312 227167333 -55026331 + AT_rich Low_complexity Low_complexity 1 21 0 187 256 37 85 chr1 227167399 227167481 -55026183 + MER5B DNA MER1_type 83 160 -18 327 218 15 105 chr1 227168907 227169040 -55024624 + MIR SINE MIR 123 243 -19 768 216 202 45 chr1 227169773 227170243 -55023421 - MLT1H LTR MaLR 0 555 8 218 259 0 0 chr1 227170493 227170551 -55023113 + (TTCA)n Simple_repeat Simple_repeat 2 59 0 625 291 23 27 chr1 227170991 227171211 -55022453 - L2 LINE L2 -1 3312 3094 * 1390 256 114 8 chr1 227171191 227171690 -55021974 - L2 LINE L2 -1201 2113 1562 27 29 0 0 chr1 227174062 227174096 -55019568 + AT_rich Low_complexity Low_complexity 1 34 0 245 286 73 59 chr1 227174164 227174289 -55019375 - L2 LINE L2 -3 3310 3179 327 49 0 0 chr1 227174289 227174330 -55019334 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 286 73 59 chr1 227174330 227174424 -55019240 - L2 LINE L2 -134 3179 3088 2095 133 0 0 chr1 227174492 227174793 -55018871 + AluSx SINE Alu 10 310 -2 180 303 107 77 chr1 227174949 227175483 -55018181 - L2 LINE L2 -454 2860 2311 587 275 108 22 chr1 227176315 227176537 -55017127 + MIR SINE MIR 4 244 -18 209 280 57 103 chr1 227177577 227177752 -55015912 + MIR SINE MIR 46 212 -50 323 247 273 10 chr1 227180331 227180525 -55013139 + L2 LINE L2 3026 3270 -43 201 161 0 0 chr1 227181043 227181074 -55012590 + T-rich Low_complexity Low_complexity 3 33 0 1008 178 6 0 chr1 227181452 227181626 -55012038 - AluJb SINE Alu -9 303 129 252 408 50 8 chr1 227182255 227182375 -55011289 - L2 LINE L2 0 3272 3148 901 218 121 41 chr1 227183088 227183500 -55010164 + L1MC4 LINE L1 7597 8041 -1 282 273 209 18 chr1 227186982 227187092 -55006572 - MIR SINE MIR -75 187 57 422 254 119 0 chr1 227190023 227190141 -55003523 + MIR SINE MIR 79 210 -52 198 0 0 0 chr1 227190669 227190691 -55002973 + (A)n Simple_repeat Simple_repeat 1 22 0 1871 172 49 11 chr1 227191005 227191353 -55002311 + MLT1A1 LTR MaLR 1 361 -4 218 340 53 21 chr1 227193108 227193202 -55000462 - L2 LINE L2 -40 3232 3136 602 296 69 12 chr1 227193217 227193464 -55000200 + MIR SINE MIR 2 262 0 206 300 0 0 chr1 227193904 227193964 -54999700 - L2 LINE L2 0 3272 3213 1582 190 0 4 chr1 227195222 227195496 -54998168 + AluSx SINE Alu 29 301 -11 587 311 84 0 chr1 227195647 227195837 -54997827 + MIR SINE MIR 49 254 -8 382 373 8 0 chr1 227196003 227196129 -54997535 + L2 LINE L2 3146 3272 0 2236 104 3 25 chr1 227197850 227198167 -54995497 + AluSg SINE Alu 1 310 0 2263 82 0 14 chr1 227198917 227199209 -54994455 + AluY SINE Alu 4 291 -20 244 404 76 12 chr1 227199461 227199632 -54994032 - L2 LINE L2 -557 2757 2576 22 0 0 0 chr1 227200263 227200285 -54993379 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 227200641 227200663 -54993001 + AT_rich Low_complexity Low_complexity 1 22 0 253 283 50 33 chr1 227202032 227202152 -54991512 - L2 LINE L2 0 3313 3192 307 295 87 58 chr1 227202327 227202540 -54991124 + MIR SINE MIR 5 222 -40 243 324 0 0 chr1 227202601 227202669 -54990995 + L3 LINE CR1 655 722 -855 258 237 0 17 chr1 227202791 227202850 -54990814 + MLT1J LTR MaLR 110 167 -344 * 418 189 63 0 chr1 227202818 227202913 -54990751 + MLT1L LTR MaLR 200 300 -315 1121 85 0 12 chr1 227202921 227203085 -54990579 + L1PA13 LINE L1 5997 6158 -5 21 36 0 0 chr1 227203429 227203457 -54990207 + AT_rich Low_complexity Low_complexity 1 28 0 665 371 89 17 chr1 227203521 227204114 -54989550 + L3 LINE CR1 936 1571 -6 206 276 129 26 chr1 227204235 227204351 -54989313 + MIR SINE MIR 131 258 -4 1102 417 14 0 chr1 227204769 227205052 -54988612 + AluY SINE Alu 1 287 -14 304 320 48 7 chr1 227205060 227205207 -54988457 - MIR SINE MIR -4 258 106 21 57 0 0 chr1 227206444 227206479 -54987185 + AT_rich Low_complexity Low_complexity 1 35 0 301 313 8 60 chr1 227207111 227207245 -54986419 - MER5A DNA MER1_type -24 165 39 254 322 22 67 chr1 227207836 227208016 -54985648 + MIR SINE MIR 45 216 -46 7490 45 3 33 chr1 227208256 227209684 -54983980 - SVA Other Other -839 1386 118 402 309 160 0 chr1 227209795 227209989 -54983675 - MIR SINE MIR 0 262 38 22 0 0 0 chr1 227210352 227210374 -54983290 + AT_rich Low_complexity Low_complexity 1 22 0 1413 29 0 29 chr1 227210374 227210548 -54983116 - AluYa5 SINE Alu 0 311 143 195 129 0 0 chr1 227211046 227211077 -54982587 + (GA)n Simple_repeat Simple_repeat 2 32 0 311 229 52 10 chr1 227211110 227211206 -54982458 - MLT1L LTR MaLR 0 615 516 258 287 218 0 chr1 227211445 227211546 -54982118 - MLT1L LTR MaLR -407 208 86 319 284 55 0 chr1 227212024 227212133 -54981531 + L1ME3A LINE L1 6056 6170 0 2558 124 0 22 chr1 227212393 227212803 -54980861 + L1PA14 LINE L1 5761 6161 0 209 231 6 81 chr1 227212807 227212967 -54980697 + A-rich Low_complexity Low_complexity 2 149 0 24 53 0 0 chr1 227213590 227213628 -54980036 + AT_rich Low_complexity Low_complexity 1 38 0 365 171 116 27 chr1 227213888 227214034 -54979630 + L1ME4a LINE L1 5960 6118 -3 180 0 0 0 chr1 227214338 227214358 -54979306 + (CAT)n Simple_repeat Simple_repeat 1 20 0 785 135 0 74 chr1 227214391 227214539 -54979125 + AluJb SINE Alu 169 305 -7 1121 245 64 31 chr1 227214750 227215282 -54978382 + MLT1E LTR MaLR 1 593 0 387 347 53 12 chr1 227215284 227215454 -54978210 - MIR SINE MIR -84 178 2 387 0 0 0 chr1 227215908 227215951 -54977713 + (CA)n Simple_repeat Simple_repeat 2 44 0 349 240 34 0 chr1 227215953 227216052 -54977612 - L1ME1 LINE L1 -179 5987 5896 415 282 86 24 chr1 227216620 227216829 -54976835 - L2 LINE L2 -1271 2043 1822 2108 206 82 85 chr1 227216891 227217691 -54975973 - L1ME1 LINE L1 -5 6161 5364 4313 238 56 12 chr1 227217792 227219105 -54974559 - L1ME1 LINE L1 -962 5184 3815 294 278 86 53 chr1 227219634 227219785 -54973879 + MIR SINE MIR 24 179 -83 40 37 0 0 chr1 227220127 227220181 -54973483 + AT_rich Low_complexity Low_complexity 1 54 0 2187 137 17 90 chr1 227220303 227220770 -54972894 - Tigger2a DNA MER2_type 0 434 2 219 69 0 0 chr1 227222527 227222556 -54971108 + (TG)n Simple_repeat Simple_repeat 2 30 0 412 276 26 44 chr1 227223315 227223543 -54970121 + L1ME LINE L1 541 764 -5306 24 0 0 0 chr1 227223713 227223737 -54969927 + AT_rich Low_complexity Low_complexity 1 24 0 266 331 37 40 chr1 227224238 227224564 -54969100 + L1MEd LINE L1 502 826 -5293 1674 146 29 67 chr1 227224813 227225129 -54968535 - AluJb SINE Alu -8 304 1 721 226 40 95 chr1 227225129 227225403 -54968261 + MLT1E LTR MaLR 4 262 -331 282 188 0 29 chr1 227225511 227225580 -54968084 + MLT1E LTR MaLR 527 593 0 241 259 98 36 chr1 227225636 227225748 -54967916 + L2 LINE L2 2232 2350 -964 573 310 60 53 chr1 227225896 227226196 -54967468 + L2 LINE L2 2611 2912 -402 2186 126 0 0 chr1 227226380 227226673 -54966991 - AluSx SINE Alu -17 295 3 313 316 42 0 chr1 227226711 227226806 -54966858 + L2 LINE L2 3211 3309 -4 210 260 20 0 chr1 227227099 227227149 -54966515 + L2 LINE L2 3213 3263 -9 258 32 0 0 chr1 227227648 227227679 -54965985 + (TG)n Simple_repeat Simple_repeat 1 31 0 184 172 35 0 chr1 227228295 227228353 -54965311 + (TAA)n Simple_repeat Simple_repeat 3 62 0 243 247 41 14 chr1 227229494 227229567 -54964097 - Charlie8 DNA MER1_type -2186 231 157 508 295 17 40 chr1 227229632 227229805 -54963859 + MIR SINE MIR 32 200 -62 253 313 34 82 chr1 227229823 227229970 -54963694 - Charlie8 DNA MER1_type -2277 140 1 426 286 79 8 chr1 227231095 227231221 -54962443 + L2 LINE L2 3136 3270 -2 201 347 84 0 chr1 227231551 227231646 -54962018 - L2 LINE L2 -2 3311 3209 943 159 13 66 chr1 227231887 227232113 -54961551 - L1M3 LINE L1 -574 5760 5547 357 314 17 16 chr1 227232186 227232331 -54961333 + MIR SINE MIR 29 176 -32 334 344 0 0 chr1 227232744 227232840 -54960824 + MIR3 SINE MIR 98 193 -15 355 176 27 0 chr1 227232911 227232985 -54960679 - MER116 DNA Mariner -4 76 1 717 308 37 40 chr1 227233697 227233901 -54959763 - L3 LINE CR1 -56 1521 1317 2393 52 6 58 chr1 227233901 227234226 -54959438 - AluY SINE Alu -3 308 1 717 308 37 40 chr1 227234226 227234343 -54959321 - L3 LINE CR1 -260 1317 1201 618 85 9 75 chr1 227234367 227234473 -54959191 + L1PA16 LINE L1 6024 6122 -44 311 394 12 6 chr1 227234490 227234655 -54959009 - L3 LINE CR1 -437 1140 975 445 293 98 47 chr1 227234690 227235007 -54958657 + L1ME LINE L1 31 363 -5707 34 65 0 0 chr1 227235919 227235981 -54957683 + AT_rich Low_complexity Low_complexity 1 62 0 2003 144 7 0 chr1 227236585 227236890 -54956774 - AluSx SINE Alu -5 307 1 204 40 0 0 chr1 227238098 227238123 -54955541 + (A)n Simple_repeat Simple_repeat 1 25 0 203 88 29 0 chr1 227238119 227238153 -54955511 + (GGA)n Simple_repeat Simple_repeat 3 37 0 * 303 330 0 0 chr1 227238452 227238540 -54955124 - L2 LINE L2 0 3313 3226 629 203 43 112 chr1 227243052 227243390 -54950274 + LTR37B LTR ERV1 100 457 -11 2261 154 55 10 chr1 227243390 227243805 -54949859 + Tigger2a DNA MER2_type 1 434 0 596 299 58 29 chr1 227245246 227245453 -54948211 - MIR SINE MIR -10 252 40 1083 328 95 24 chr1 227246004 227246636 -54947028 + L2 LINE L2 1297 1973 -1341 609 170 0 36 chr1 227246849 227246961 -54946703 + FLAM_A SINE Alu 23 130 -12 1084 304 100 25 chr1 227246999 227247470 -54946194 + L2 LINE L2 2804 3309 -4 423 0 0 0 chr1 227247617 227247664 -54946000 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 51 0 0 chr1 227248536 227248575 -54945089 + AT_rich Low_complexity Low_complexity 1 39 0 853 235 0 0 chr1 227248937 227249103 -54944561 - FRAM SINE Alu 0 166 1 24 85 0 0 chr1 227249159 227249218 -54944446 + AT_rich Low_complexity Low_complexity 1 59 0 278 326 14 43 chr1 227249219 227249360 -54944304 - L2 LINE L2 -71 3242 3106 212 297 161 35 chr1 227249351 227249798 -54943866 - L2 LINE L2 -278 3035 1451 * 340 309 37 13 chr1 227249960 227250132 -54943532 - MIR SINE MIR -56 206 32 192 280 144 34 chr1 227250913 227251040 -54942624 - MIR SINE MIR -60 148 25 518 233 89 74 chr1 227251261 227251463 -54942201 + MIR SINE MIR 48 252 -10 222 200 0 0 chr1 227252771 227252811 -54940853 + (CA)n Simple_repeat Simple_repeat 1 40 0 311 247 75 32 chr1 227253193 227253286 -54940378 + MIR SINE MIR 44 140 -68 609 249 66 54 chr1 227253591 227253832 -54939832 - L2 LINE L2 -62 3251 3008 540 233 26 0 chr1 227253844 227253960 -54939704 - L2 LINE L2 -692 2622 2504 26 0 0 0 chr1 227306959 227306985 -54886679 + AT_rich Low_complexity Low_complexity 1 26 0 294 206 16 0 chr1 227307414 227307477 -54886187 - MER103 DNA DNA -94 72 9 462 101 0 0 chr1 227307595 227307664 -54886000 + (TCCC)n Simple_repeat Simple_repeat 2 70 0 452 195 6 145 chr1 227308076 227308235 -54885429 + MIR SINE MIR 86 222 -40 269 298 113 83 chr1 227308406 227308947 -54884717 - L2 LINE L2 -251 3062 2489 231 36 0 0 chr1 227310315 227310343 -54883321 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 21 57 0 0 chr1 227310521 227310556 -54883108 + AT_rich Low_complexity Low_complexity 1 35 0 2161 85 17 3 chr1 227311010 227311305 -54882359 + AluSq SINE Alu 3 301 -12 183 231 26 0 chr1 227311874 227311913 -54881751 - MIR SINE MIR -1 261 222 842 132 16 0 chr1 227311941 227312070 -54881594 - AluSq/x SINE Alu -182 131 1 213 197 79 66 chr1 227312070 227312146 -54881518 - MIR SINE MIR -33 229 153 27 49 0 0 chr1 227312428 227312469 -54881195 + AT_rich Low_complexity Low_complexity 1 41 0 734 254 62 27 chr1 227312796 227313020 -54880644 - MIR SINE MIR 0 262 31 22 56 0 0 chr1 227313079 227313115 -54880549 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr1 227313394 227313425 -54880239 + AT_rich Low_complexity Low_complexity 1 31 0 2090 138 10 0 chr1 227313841 227314146 -54879518 - AluJo SINE Alu -2 310 3 24 77 0 0 chr1 227314201 227314253 -54879411 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr1 227314684 227314722 -54878942 + AT_rich Low_complexity Low_complexity 1 38 0 1041 283 33 82 chr1 227314878 227315105 -54878559 - MLT1H1 LTR MaLR -2 553 317 2113 125 0 7 chr1 227315105 227315401 -54878263 + AluSx SINE Alu 1 294 -18 1041 283 33 82 chr1 227315401 227315750 -54877914 - MLT1H1 LTR MaLR -238 317 5 2061 126 0 13 chr1 227315785 227316086 -54877578 - AluSx SINE Alu -15 297 1 29 0 0 0 chr1 227318817 227318846 -54874818 + AT_rich Low_complexity Low_complexity 1 29 0 1181 260 59 28 chr1 227319000 227319354 -54874310 + L1MD1 LINE L1 8 372 -6037 396 133 36 0 chr1 227319356 227319439 -54874225 + GA-rich Low_complexity Low_complexity 2 87 0 3693 235 30 39 chr1 227319441 227320731 -54872933 + L1MD1 LINE L1 375 1643 -4763 5080 216 59 77 chr1 227321425 227324340 -54869324 + L1MD1 LINE L1 1654 4563 -1843 405 0 0 0 chr1 227324461 227324506 -54869158 + (TA)n Simple_repeat Simple_repeat 1 45 0 1255 166 126 22 chr1 227324706 227324977 -54868687 + MER58B DNA MER1_type 42 340 -1 23 0 0 0 chr1 227325556 227325579 -54868085 + AT_rich Low_complexity Low_complexity 1 23 0 694 262 162 18 chr1 227325727 227325956 -54867708 - MIR SINE MIR 0 262 1 312 27 0 0 chr1 227326490 227326527 -54867137 + (TAATG)n Simple_repeat Simple_repeat 3 39 0 332 325 41 26 chr1 227326802 227326996 -54866668 + L1MC4a LINE L1 4959 5155 -991 345 301 64 23 chr1 227327697 227327916 -54865748 + L1MC4a LINE L1 5684 5911 -1897 273 229 264 36 chr1 227328609 227328749 -54864915 - MIR SINE MIR -88 174 3 1191 204 30 4 chr1 227330146 227330410 -54863254 - MER58B DNA MER1_type 0 341 71 22567 154 32 19 chr1 227330412 227331524 -54862140 + L1MDa LINE L1 18 1115 -5425 923 218 0 0 chr1 227331524 227331694 -54861970 - FAM SINE Alu -5 170 1 22567 154 32 19 chr1 227331694 227331801 -54861863 + L1MDa LINE L1 1115 1219 -5321 1423 56 0 0 chr1 227331801 227331981 -54861683 + L1PA4 LINE L1 5973 6152 -3 22567 154 32 19 chr1 227331981 227336055 -54857609 + L1MDa LINE L1 1219 5758 -782 230 294 20 14 chr1 227336659 227336805 -54856859 + L1MD1 LINE L1 4597 4743 -1663 * 4566 161 47 30 chr1 227336783 227337724 -54855940 + L1MD1 LINE L1 5546 6502 0 226 346 26 0 chr1 227337757 227337835 -54855829 + MIR SINE MIR 5 84 -178 730 328 83 23 chr1 227337835 227338222 -54855442 + MLT1J2 LTR MaLR 1 410 -40 24 0 0 0 chr1 227338420 227338444 -54855220 + AT_rich Low_complexity Low_complexity 1 24 0 358 353 79 12 chr1 227340542 227340794 -54852870 - L1ME4a LINE L1 -162 5959 5691 5082 174 59 48 chr1 227340795 227342376 -54851288 + pTR5 LTR ERV1 743 2438 0 503 283 122 19 chr1 227342397 227342779 -54850885 - L1ME4a LINE L1 -519 5645 5257 2180 104 0 16 chr1 227342881 227343188 -54850476 - AluSx SINE Alu 0 312 11 324 350 45 79 chr1 227343411 227343702 -54849962 + L2 LINE L2 2919 3199 -73 243 325 130 55 chr1 227344874 227345166 -54848498 + L2 LINE L2 2422 2735 -579 2089 96 9 75 chr1 227345320 227345654 -54848010 - AluSx SINE Alu 0 312 1 205 250 0 0 chr1 227345684 227345728 -54847936 + CT-rich Low_complexity Low_complexity 3 46 0 448 276 160 0 chr1 227345777 227345933 -54847731 - MIR SINE MIR -10 252 72 437 259 179 5 chr1 227346321 227346515 -54847149 - MIR SINE MIR -14 248 16 2852 7 0 0 chr1 227346589 227346896 -54846768 - AluYb8 SINE Alu -11 307 1 4622 154 33 8 chr1 227347344 227347944 -54845720 - Tigger3(Golem) DNA MER2_type -1 3027 2398 2370 95 0 0 chr1 227347944 227348249 -54845415 + AluY SINE Alu 1 305 -6 4622 154 33 8 chr1 227348249 227348492 -54845172 - Tigger3(Golem) DNA MER2_type -630 2398 2163 847 241 0 0 chr1 227348491 227348649 -54845015 - Tigger3(Golem) DNA MER2_type -2871 158 1 * 334 273 125 8 chr1 227349605 227349733 -54843931 + MIR SINE MIR 111 253 -9 2118 128 3 0 chr1 227350914 227351218 -54842446 + AluSx SINE Alu 1 305 -7 227 361 22 27 chr1 227351332 227351481 -54842183 + MIR SINE MIR 43 191 -65 907 261 54 0 chr1 227352801 227353023 -54840641 + MIR SINE MIR 8 241 -21 24 0 0 0 chr1 227353455 227353479 -54840185 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr1 227353638 227353673 -54839991 + AT_rich Low_complexity Low_complexity 1 35 0 302 359 69 14 chr1 227354686 227354831 -54838833 + L2 LINE L2 2876 3028 -244 1925 129 30 17 chr1 227355165 227355460 -54838204 - AluSx SINE Alu -13 299 1 2295 101 49 20 chr1 227355550 227355895 -54837769 + THE1B LTR MaLR 10 364 0 238 383 173 6 chr1 227355946 227356270 -54837394 + L2 LINE L2 2361 2738 -576 341 286 78 26 chr1 227356607 227356761 -54836903 + L2 LINE L2 3152 3313 0 248 258 79 107 chr1 227357719 227357897 -54835767 + MER104 DNA Tc2 1 173 -7 217 213 53 11 chr1 227357913 227358007 -54835657 + (TTA)n Simple_repeat Simple_repeat 2 99 0 269 398 51 0 chr1 227359183 227359359 -54834305 - MIR SINE MIR -64 198 14 958 229 37 5 chr1 227359488 227359702 -54833962 - MLT1A1 LTR MaLR -144 221 1 237 388 78 37 chr1 227359831 227360076 -54833588 + L2 LINE L2 3014 3268 -4 2052 115 3 10 chr1 227360921 227361233 -54832431 + AluSg SINE Alu 1 310 0 1539 243 78 24 chr1 227361280 227361947 -54831717 + L2 LINE L2 2606 3313 0 1061 230 10 86 chr1 227361989 227362384 -54831280 - MLT1A1 LTR MaLR 0 365 1 730 224 118 6 chr1 227362522 227362692 -54830972 + MER5A DNA MER1_type 1 189 0 248 325 13 0 chr1 227362868 227362945 -54830719 + L2 LINE L2 2566 2643 -671 388 297 17 42 chr1 227363971 227364089 -54829575 + MER5B DNA MER1_type 62 176 -2 1653 123 119 4 chr1 227364548 227364825 -54828839 - AluSg1 SINE Alu 0 309 1 25 51 0 0 chr1 227365137 227365176 -54828488 + AT_rich Low_complexity Low_complexity 1 39 0 1911 55 141 0 chr1 227365549 227365805 -54827859 - AluY SINE Alu -19 292 1 234 322 25 83 chr1 227366045 227366166 -54827498 - L2 LINE L2 -211 3061 2948 225 358 172 13 chr1 227366288 227366590 -54827074 - L2 LINE L2 -542 2772 2423 200 182 0 0 chr1 227369166 227369199 -54824465 + (TG)n Simple_repeat Simple_repeat 2 34 0 360 0 0 0 chr1 227369585 227369625 -54824039 + (T)n Simple_repeat Simple_repeat 1 40 0 188 250 181 0 chr1 227369629 227369701 -54823963 + MIR SINE MIR 176 260 -2 1857 115 3 44 chr1 227370064 227370380 -54823284 - AluSx SINE Alu 0 304 1 246 136 0 0 chr1 227370594 227370638 -54823026 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 232 200 15 31 chr1 227371543 227371608 -54822056 + L2 LINE L2 3250 3313 0 249 333 93 23 chr1 227371838 227371967 -54821697 + MIR SINE MIR 2 139 -123 794 222 135 13 chr1 227371985 227372215 -54821449 + MIR SINE MIR 5 262 0 277 241 0 0 chr1 227372353 227372411 -54821253 + L2 LINE L2 3215 3272 0 27 73 0 0 chr1 227373600 227373655 -54820009 + AT_rich Low_complexity Low_complexity 1 55 0 367 321 64 0 chr1 227373691 227373831 -54819833 - MIR SINE MIR -71 191 43 362 276 0 0 chr1 227373976 227374052 -54819612 - MER5A DNA MER1_type -101 88 13 1178 174 77 35 chr1 227374071 227374226 -54819438 - MER33 DNA MER1_type -2261 324 177 1703 132 72 4 chr1 227374226 227374518 -54819146 - AluSx SINE Alu 0 310 1 1178 174 77 35 chr1 227374518 227374671 -54818993 - MER33 DNA MER1_type -2408 177 2 1870 113 0 39 chr1 227377254 227377538 -54816126 - AluSg SINE Alu 0 310 38 5995 154 32 36 chr1 227377707 227379271 -54814393 - L1MA6 LINE L1 -119 6181 4625 2279 108 0 0 chr1 227379271 227379577 -54814087 - AluSx SINE Alu -2 310 5 5995 154 32 36 chr1 227379577 227380013 -54813651 - L1MA6 LINE L1 -1675 4625 4189 2339 55 3 0 chr1 227380237 227380526 -54813138 + AluY SINE Alu 4 293 -18 241 354 8 8 chr1 227381664 227381794 -54811870 + L1MEc LINE L1 251 380 -6016 831 265 108 52 chr1 227382195 227382681 -54810983 + L1MEc LINE L1 847 1218 -4999 3225 135 58 23 chr1 227382814 227383385 -54810279 + L1MA4 LINE L1 5678 6273 -27 1982 143 125 21 chr1 227383385 227383770 -54809894 + MSTA LTR MaLR 4 428 0 3225 135 58 23 chr1 227383770 227383800 -54809864 + L1MA4 LINE L1 6273 6300 0 1805 117 3 73 chr1 227384098 227384435 -54809229 - AluSq SINE Alu 0 313 1 1004 150 90 0 chr1 227384914 227384970 -54808694 + L1MA9 LINE L1 6095 6145 -167 432 0 0 0 chr1 227384970 227385018 -54808646 + (CA)n Simple_repeat Simple_repeat 2 49 0 1004 150 90 0 chr1 227385018 227385161 -54808503 + L1MA9 LINE L1 6145 6312 0 1832 202 24 0 chr1 227385252 227385623 -54808041 - L1MA9 LINE L1 -237 6075 5696 290 277 69 17 chr1 227385757 227385879 -54807785 + MLT1I LTR MaLR 19 148 -272 310 332 71 34 chr1 227385893 227386161 -54807503 - HAL1 LINE L1 -292 2215 1938 2214 75 4 0 chr1 227386919 227387244 -54806420 - AluY SINE Alu 0 326 1 204 40 0 0 chr1 227387380 227387405 -54806259 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr1 227387541 227387564 -54806100 + AT_rich Low_complexity Low_complexity 1 23 0 273 221 14 28 chr1 227387577 227387722 -54805942 + (TA)n Simple_repeat Simple_repeat 2 144 0 307 322 0 0 chr1 227387727 227387817 -54805847 - L1MC4 LINE L1 -1339 6703 6614 32 26 0 0 chr1 227387857 227387896 -54805768 + AT_rich Low_complexity Low_complexity 1 39 0 737 266 5 43 chr1 227388132 227388279 -54805385 - MIR SINE MIR -4 258 120 3143 140 43 4 chr1 227388279 227388815 -54804849 - L1PA16 LINE L1 -2 6164 5608 737 266 5 43 chr1 227388815 227388874 -54804790 - MIR SINE MIR -142 120 60 262 344 89 17 chr1 227389343 227389523 -54804141 - MIR3 SINE MIR -51 211 19 24 32 0 0 chr1 227391169 227391200 -54802464 + AT_rich Low_complexity Low_complexity 1 31 0 187 271 43 14 chr1 227392203 227392273 -54801391 - MIR3 SINE MIR -36 172 101 898 185 0 12 chr1 227392714 227392876 -54800788 - FRAM SINE Alu -17 159 1 222 327 164 48 chr1 227393010 227393114 -54800550 + MIR SINE MIR 18 133 -75 2221 20 0 0 chr1 227393321 227393616 -54800048 + L1PA3 LINE L1 5892 6186 0 13757 132 36 33 chr1 227394237 227395251 -54798413 - Tigger1 DNA MER2_type -1 2417 1408 2276 108 0 0 chr1 227395251 227395547 -54798117 + AluSx SINE Alu 1 296 -16 13757 132 36 33 chr1 227395547 227396941 -54796723 - Tigger1 DNA MER2_type -1010 1408 1 980 304 74 46 chr1 227396967 227398201 -54795463 - L1ME3 LINE L1 -273 5889 4617 539 316 134 66 chr1 227398254 227399382 -54794282 + L2 LINE L2 1329 2533 -781 2211 122 36 30 chr1 227399714 227400076 -54793588 - THE1B LTR MaLR 0 364 1 612 269 65 46 chr1 227400302 227400518 -54793146 - MIR SINE MIR -24 238 19 182 250 33 17 chr1 227400558 227400618 -54793046 - MIR SINE MIR -106 156 96 18867 53 4 2 chr1 227401649 227404842 -54788822 - L1PA5 LINE L1 -1 6153 2945 385 296 74 6 chr1 227405929 227406091 -54787573 + L1MEd LINE L1 4 176 -5943 320 312 54 98 chr1 227406369 227406410 -54787254 + L1MEd LINE L1 512 553 -5566 360 0 0 0 chr1 227406410 227406450 -54787214 + (CA)n Simple_repeat Simple_repeat 2 41 0 320 312 54 98 chr1 227406450 227406703 -54786961 + L1MEd LINE L1 553 793 -5326 414 287 24 43 chr1 227406816 227407209 -54786455 + L1MEd LINE L1 805 1250 -4869 326 303 109 8 chr1 227407245 227407364 -54786300 + HAL1 LINE L1 1373 1503 -1004 221 0 0 33 chr1 227407560 227407590 -54786074 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1042 267 89 18 chr1 227407736 227408893 -54784771 - L1MEc LINE L1 -5039 1357 40 213 296 74 25 chr1 227410264 227410345 -54783319 + MIR SINE MIR 34 118 -90 238 205 0 0 chr1 227411981 227412020 -54781644 - MIR SINE MIR -24 238 200 355 241 89 9 chr1 227412600 227412712 -54780952 - MIR SINE MIR -71 191 71 46 45 0 0 chr1 227412849 227412916 -54780748 + AT_rich Low_complexity Low_complexity 1 67 0 2565 81 8 11 chr1 227413100 227413469 -54780195 + L1PB1 LINE L1 5783 6150 -1 24 0 0 0 chr1 227413584 227413608 -54780056 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr1 227414478 227414514 -54779150 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr1 227414663 227414692 -54778972 + AT_rich Low_complexity Low_complexity 1 29 0 382 384 101 12 chr1 227414761 227415185 -54778479 + L2 LINE L2 2243 2704 -610 201 379 34 34 chr1 227415611 227415788 -54777876 + MER5A DNA MER1_type 2 178 -11 328 304 81 7 chr1 227416674 227416822 -54776842 + MIR SINE MIR 100 258 -4 210 158 0 0 chr1 227417162 227417200 -54776464 + A-rich Low_complexity Low_complexity 1 38 0 185 243 43 57 chr1 227417837 227417907 -54775757 + L2 LINE L2 3236 3304 -9 21 89 0 0 chr1 227417926 227417982 -54775682 + AT_rich Low_complexity Low_complexity 1 56 0 875 287 25 38 chr1 227418069 227418257 -54775407 + MLT1I LTR MaLR 82 266 -143 1570 189 16 55 chr1 227418257 227418637 -54775027 - MLT1A1 LTR MaLR 0 365 1 875 287 25 38 chr1 227418637 227418762 -54774902 + MLT1I LTR MaLR 266 391 -18 460 352 43 0 chr1 227418840 227419002 -54774662 - MIR3 SINE MIR -1 207 39 221 356 47 27 chr1 227419444 227419593 -54774071 + L3b LINE CR1 1338 1489 -94 502 151 0 54 chr1 227419605 227419698 -54773966 + MER63 DNA MER1_type 664 751 -310 824 272 259 30 chr1 227419931 227420325 -54773339 + L2 LINE L2 2830 3313 0 29 60 0 0 chr1 227420325 227420375 -54773289 + AT_rich Low_complexity Low_complexity 1 50 0 185 216 0 0 chr1 227421277 227421314 -54772350 - L2 LINE L2 -4 3309 3273 7217 176 88 69 chr1 227421389 227421407 -54772257 + L1MC3 LINE L1 5706 5722 -2063 1632 193 82 25 chr1 227421407 227421847 -54771817 + MLT1C LTR MaLR 1 465 -2 7217 176 88 69 chr1 227421847 227423179 -54770485 + L1MC3 LINE L1 5722 7194 -591 242 309 21 21 chr1 227423179 227423273 -54770391 + MLT1F1 LTR MaLR 38 131 -436 7217 176 88 69 chr1 227423273 227423689 -54769975 + L1MC3 LINE L1 7194 7601 -184 2198 197 76 10 chr1 227423683 227424218 -54769446 - L1MC3 LINE L1 -166 6000 5711 * 1560 199 20 13 chr1 227425488 227425794 -54767870 - AluJb SINE Alu -2 310 3 766 260 20 10 chr1 227425911 227426107 -54767557 + MIR SINE MIR 17 214 -48 380 237 9 44 chr1 227426394 227426508 -54767156 + MIR SINE MIR 119 228 -34 24 0 0 0 chr1 227429400 227429424 -54764240 + AT_rich Low_complexity Low_complexity 1 24 0 259 406 48 18 chr1 227429501 227429666 -54763998 - MIR3 SINE MIR -6 202 33 1582 189 67 15 chr1 227430199 227430542 -54763122 + MLT1A1 LTR MaLR 1 361 -4 525 329 40 9 chr1 227430723 227430948 -54762716 - L2 LINE L2 -528 2786 2555 633 188 6 23 chr1 227431274 227431450 -54762214 + GA-rich Low_complexity Low_complexity 4 176 0 242 302 50 33 chr1 227431527 227431709 -54761955 + L1MEd LINE L1 640 824 -5295 2213 92 0 35 chr1 227431790 227432107 -54761557 + AluSx SINE Alu 1 306 -6 3476 155 23 5 chr1 227432116 227432734 -54760930 + L1PB4 LINE L1 5527 6155 -1 298 274 147 38 chr1 227432777 227433124 -54760540 + L1MEd LINE L1 866 1250 -4869 5702 118 16 5 chr1 227433150 227434191 -54759473 + L1PA16 LINE L1 5112 6166 0 194 369 44 38 chr1 227434321 227434481 -54759183 - L2 LINE L2 -893 2421 2261 237 306 191 6 chr1 227434784 227434957 -54758707 - MIR SINE MIR -56 206 2 462 306 116 7 chr1 227435152 227435453 -54758211 - L1MC4a LINE L1 -1834 5974 5641 21 71 0 0 chr1 227435558 227435600 -54758064 + AT_rich Low_complexity Low_complexity 1 42 0 2264 98 0 0 chr1 227435720 227436015 -54757649 + AluSg SINE Alu 1 295 -15 38 39 0 0 chr1 227436244 227436296 -54757368 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr1 227436433 227436462 -54757202 + AT_rich Low_complexity Low_complexity 1 29 0 300 154 0 0 chr1 227436495 227436547 -54757117 + CT-rich Low_complexity Low_complexity 3 54 0 1304 160 51 51 chr1 227436554 227436847 -54756817 - AluJo SINE Alu -19 293 1 4915 94 4 1 chr1 227437013 227437697 -54755967 - L1PA10 LINE L1 -1 6167 5482 456 331 67 0 chr1 227437803 227437981 -54755683 - MIR SINE MIR -1 261 72 487 319 124 19 chr1 227438053 227438514 -54755150 - L2 LINE L2 -1240 2074 1566 854 83 0 8 chr1 227438514 227438646 -54755018 - L1MA2 LINE L1 -125 6179 6049 2053 162 30 3 chr1 227439264 227439603 -54754061 + MLT2B2 LTR ERVL 1 348 -167 339 260 14 96 chr1 227439762 227439908 -54753756 + MIR SINE MIR 122 255 -7 4927 158 109 59 chr1 227440626 227441148 -54752516 - L1MC1 LINE L1 -1 6332 5838 1236 199 87 22 chr1 227441148 227441470 -54752194 - MER2 DNA MER2_type 0 344 2 4927 158 109 59 chr1 227441470 227441935 -54751729 - L1MC1 LINE L1 -495 5838 5398 2268 106 0 6 chr1 227441935 227442246 -54751418 - AluSx SINE Alu -3 309 1 4927 158 109 59 chr1 227442246 227443071 -54750593 - L1MC1 LINE L1 -935 5398 4404 1261 306 145 48 chr1 227443347 227443712 -54749952 + L3 LINE CR1 409 737 -840 2181 98 3 0 chr1 227443712 227444031 -54749633 + AluSp SINE Alu 1 320 0 1261 306 145 48 chr1 227444031 227444513 -54749151 + L3 LINE CR1 737 1340 -237 247 306 96 70 chr1 227444798 227444997 -54748667 + L3 LINE CR1 1374 1577 0 229 192 0 123 chr1 227445109 227445182 -54748482 - L2 LINE L2 -7 3265 3202 446 279 140 11 chr1 227445391 227445570 -54748094 + MIR SINE MIR 29 230 -32 253 268 24 0 chr1 227445726 227445808 -54747856 + (TA)n Simple_repeat Simple_repeat 1 84 0 495 213 69 139 chr1 227445874 227446076 -54747588 - MER5A DNA MER1_type -1 188 1 849 152 14 0 chr1 227446251 227446389 -54747275 + FLAM_C SINE Alu 1 140 -3 259 81 0 0 chr1 227446392 227446429 -54747235 + AluJ/F(R)AM SINE Alu 176 212 -99 192 358 15 0 chr1 227446774 227446841 -54746823 + L2 LINE L2 3246 3313 0 358 275 53 53 chr1 227448024 227448195 -54745469 + HAL1 LINE L1 8 178 -2329 6496 140 57 14 chr1 227448423 227449603 -54744061 - Tigger3b DNA MER2_type 0 1231 1 314 179 145 34 chr1 227450092 227450209 -54743455 - L2 LINE L2 -1583 1731 1602 23 0 0 0 chr1 227450591 227450614 -54743050 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 227450922 227450943 -54742721 + AT_rich Low_complexity Low_complexity 1 21 0 1755 144 54 41 chr1 227451345 227451713 -54741951 - THE1C LTR MaLR -2 373 1 25 51 0 0 chr1 227452897 227452936 -54740728 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr1 227453375 227453401 -54740263 + AT_rich Low_complexity Low_complexity 1 26 0 421 160 250 20 chr1 227454061 227454125 -54739539 + MLT2B3 LTR ERVL 424 472 -82 366 23 0 0 chr1 227454125 227454168 -54739496 + (CA)n Simple_repeat Simple_repeat 2 44 0 421 160 250 20 chr1 227454168 227454203 -54739461 + MLT2B3 LTR ERVL 472 546 -8 704 12 0 0 chr1 227454280 227454365 -54739299 - L1PA2 LINE L1 0 6155 6071 1112 276 93 42 chr1 227454535 227455009 -54738655 - L2 LINE L2 -946 2368 1871 339 111 28 14 chr1 227455060 227455132 -54738532 + (TA)n Simple_repeat Simple_repeat 1 73 0 209 167 42 0 chr1 227455163 227455211 -54738453 - L2 LINE L2 -1641 1673 1624 2226 171 120 10 chr1 227458026 227458442 -54735222 + MLT2B2 LTR ERVL 1 462 -53 973 253 122 8 chr1 227458447 227458795 -54734869 + MLT1F LTR MaLR 97 567 0 562 354 5 5 chr1 227458834 227459046 -54734618 + ERVL LTR ERVL 4076 4287 -1477 598 310 52 60 chr1 227459107 227459491 -54734173 + ERVL LTR ERVL 4550 4930 -834 546 312 75 32 chr1 227459668 227459976 -54733688 + MLT1H LTR MaLR 229 549 0 3740 244 39 42 chr1 227460390 227460401 -54733263 - L1MDa LINE L1 -1968 4572 4562 2138 121 0 13 chr1 227460401 227460714 -54732950 - AluSg SINE Alu -1 309 1 3740 244 39 42 chr1 227460714 227461445 -54732219 - L1MDa LINE L1 -1978 4562 3833 1505 196 116 12 chr1 227461445 227461772 -54731892 - MLT1A1 LTR MaLR -2 363 3 3740 244 39 42 chr1 227461772 227462440 -54731224 - L1MDa LINE L1 -2707 3833 3165 2061 124 7 0 chr1 227462781 227463071 -54730593 + AluSp SINE Alu 3 294 -19 2343 215 74 56 chr1 227463298 227464460 -54729204 - L1MDa LINE L1 -3363 3177 1983 * 5834 65 30 0 chr1 227464438 227465210 -54728454 - L1PA7 LINE L1 -2 6546 5752 1753 300 106 69 chr1 227466427 227468063 -54725601 - L2 LINE L2 -8 3305 1608 207 291 89 89 chr1 227468206 227468409 -54725255 - L2 LINE L2 -1653 1661 1459 1676 232 49 22 chr1 227468409 227468862 -54724802 + LTR40c LTR ERVL 1 465 0 289 193 18 0 chr1 227468876 227468933 -54724731 + HERVL40 LTR ERVL 18 75 -5455 938 247 22 72 chr1 227469121 227469441 -54724223 + HERVL40 LTR ERVL 916 1219 -4311 6662 261 56 49 chr1 227469759 227471262 -54722402 + HERVL40 LTR ERVL 3389 4912 -618 553 188 154 17 chr1 227471262 227471379 -54722285 - FLAM_C SINE Alu 0 133 1 6662 261 56 49 chr1 227471379 227472001 -54721663 + HERVL40 LTR ERVL 4912 5528 -2 1607 206 67 27 chr1 227472001 227472448 -54721216 + LTR40c LTR ERVL 1 465 0 1686 313 123 16 chr1 227472471 227473277 -54720387 - L2 LINE L2 -1901 1413 522 1783 174 36 0 chr1 227473279 227473636 -54720028 - L1 LINE L1 -3114 3032 2663 938 220 24 5 chr1 227473748 227473957 -54719707 + MLT1D LTR MaLR 293 505 0 2168 301 64 15 chr1 227474125 227474981 -54718683 + HERVL LTR ERVL 1596 2497 -2677 376 320 78 74 chr1 227475284 227475673 -54717991 + LTR16A LTR ERVL 2 438 -12 1221 229 90 6 chr1 227475767 227476200 -54717464 + MLT1F1 LTR MaLR 1 567 0 590 359 5 0 chr1 227476239 227476451 -54717213 + HERVL LTR ERVL 4036 4248 -1406 611 310 52 60 chr1 227476512 227476896 -54716768 + HERVL LTR ERVL 4550 4930 -834 541 312 75 32 chr1 227477073 227477381 -54716283 + MLT1H LTR MaLR 229 549 0 2177 119 0 13 chr1 227477811 227478122 -54715542 - AluSg SINE Alu -3 307 1 3621 246 39 39 chr1 227478124 227478853 -54714811 - L1MDa LINE L1 -1978 4562 3831 1505 196 116 12 chr1 227478853 227479180 -54714484 - MLT1A1 LTR MaLR -2 363 3 3621 246 39 39 chr1 227479180 227479848 -54713816 - L1MDa LINE L1 -2708 3832 3165 2088 124 7 0 chr1 227480189 227480479 -54713185 + AluSp SINE Alu 3 294 -19 1480 222 81 64 chr1 227480706 227481706 -54711958 - L1MDa LINE L1 -3363 3177 2149 9071 197 41 21 chr1 227481806 227483966 -54709698 - L1PBb LINE L1 -1835 4368 2253 1198 142 49 31 chr1 227483966 227484191 -54709473 + MER30 DNA MER1_type 2 230 0 9071 197 41 21 chr1 227484191 227486298 -54707366 - L1PBb LINE L1 -3950 2253 1 2938 304 72 31 chr1 227486265 227487835 -54705829 - L1PBa LINE L1 -5226 1637 3 * 2537 11 0 0 chr1 227488541 227488818 -54704846 + AluYa5 SINE Alu 34 310 -1 332 296 30 40 chr1 227488949 227489148 -54704516 + L1ME LINE L1 5608 5804 -317 22 0 0 0 chr1 227489153 227489175 -54704489 + AT_rich Low_complexity Low_complexity 1 22 0 1375 212 42 7 chr1 227489178 227489461 -54704203 + AluJo SINE Alu 4 296 -16 1606 157 71 0 chr1 227489463 227489743 -54703921 + AluSx SINE Alu 1 300 -12 794 129 0 45 chr1 227489758 227489890 -54703774 + FLAM_C SINE Alu 1 126 -7 327 309 77 42 chr1 227490027 227490195 -54703469 + L2 LINE L2 3132 3305 -8 287 224 13 0 chr1 227490407 227490483 -54703181 + (TA)n Simple_repeat Simple_repeat 2 78 0 794 219 24 0 chr1 227490855 227491019 -54702645 - AluJb SINE Alu -13 299 132 3932 157 32 13 chr1 227491121 227492361 -54701303 + L1PB3 LINE L1 4514 5779 -375 306 264 31 0 chr1 227492364 227492493 -54701171 + (TA)n Simple_repeat Simple_repeat 2 134 0 1975 143 3 24 chr1 227492496 227492825 -54700839 + L1PB3 LINE L1 5777 6098 -56 307 164 27 14 chr1 227492825 227492888 -54700776 + L1MA8 LINE L1 6212 6285 -6 2767 197 99 27 chr1 227492900 227493576 -54700088 - L1MC4 LINE L1 -554 7488 6764 230 280 40 0 chr1 227494829 227494904 -54698760 + L2 LINE L2 2437 2514 -800 815 298 164 13 chr1 227494961 227495665 -54697999 - L2 LINE L2 -1 3312 2487 2983 205 100 3 chr1 227495665 227496422 -54697242 + Charlie1 DNA MER1_type 1563 2393 -368 651 207 59 15 chr1 227496423 227496558 -54697106 + Tigger3(Golem) DNA MER2_type 2 142 -2887 1509 168 0 0 chr1 227496565 227496803 -54696861 + Tigger3(Golem) DNA MER2_type 2792 3029 0 965 194 187 22 chr1 227496803 227497118 -54696546 + Charlie1 DNA MER1_type 2392 2758 -3 309 304 85 71 chr1 227497118 227497342 -54696322 - L2 LINE L2 -890 2424 2198 941 127 15 0 chr1 227497346 227497480 -54696184 + AluJo SINE Alu 1 136 -176 22 0 0 0 chr1 227497480 227497502 -54696162 + AT_rich Low_complexity Low_complexity 1 22 0 296 331 92 25 chr1 227497710 227497873 -54695791 + L2 LINE L2 2589 2762 -552 455 262 16 8 chr1 227498250 227498372 -54695292 - L2 LINE L2 0 3313 3191 35 0 0 0 chr1 227498384 227498419 -54695245 + AT_rich Low_complexity Low_complexity 1 35 0 2245 109 0 0 chr1 227498550 227498843 -54694821 + AluSx SINE Alu 3 295 -17 3380 154 39 63 chr1 227498908 227499155 -54694509 + MER21A LTR ERV1 11 262 -669 11280 33 2 0 chr1 227499155 227501276 -54692388 - L1PA4 LINE L1 -2 6153 4030 3380 154 39 63 chr1 227501276 227501994 -54691670 + MER21A LTR ERV1 262 912 -19 2138 228 175 14 chr1 227502587 227503364 -54690300 + L1M4 LINE L1 3759 4660 -1486 200 311 9 9 chr1 227503395 227503501 -54690163 + (TATAG)n Simple_repeat Simple_repeat 5 110 0 375 181 0 0 chr1 227503551 227503623 -54690041 + (TA)n Simple_repeat Simple_repeat 1 72 0 541 270 61 58 chr1 227503626 227504019 -54689645 + L1M4 LINE L1 4840 5233 -913 1417 174 8 4 chr1 227505669 227505922 -54687742 - L1MA7 LINE L1 -304 6008 5755 1312 165 40 30 chr1 227505922 227506221 -54687443 + L1MA7 LINE L1 5986 6291 0 33 25 0 0 chr1 227507030 227507070 -54686594 + AT_rich Low_complexity Low_complexity 1 40 0 201 116 0 47 chr1 227507681 227507724 -54685940 + (TA)n Simple_repeat Simple_repeat 1 41 0 324 202 34 22 chr1 227507725 227507814 -54685850 - L1MC4 LINE L1 -1339 6703 6614 2474 93 0 0 chr1 227507823 227508135 -54685529 - AluSx SINE Alu 0 312 1 1627 147 0 86 chr1 227509355 227509668 -54683996 + AluJo SINE Alu 1 286 -26 250 333 21 0 chr1 227509738 227509834 -54683830 - MIR SINE MIR -108 154 57 1770 176 0 0 chr1 227509845 227510134 -54683530 - AluJb SINE Alu -23 289 1 385 301 130 0 chr1 227510420 227510566 -54683098 - MIR SINE MIR -96 166 2 233 331 189 30 chr1 227510941 227511437 -54682227 - L2 LINE L2 -359 2955 2381 4119 191 48 11 chr1 227512676 227513635 -54680029 - L1MB8 LINE L1 0 6178 5192 255 156 31 16 chr1 227514514 227514578 -54679086 + (TTTAA)n Simple_repeat Simple_repeat 3 67 0 540 204 12 90 chr1 227514581 227514748 -54678916 - MER106B DNA MER1_type -904 155 2 240 288 112 73 chr1 227514996 227515201 -54678463 - L2 LINE L2 -35 3237 3025 355 207 46 81 chr1 227515615 227515789 -54677875 - L1ME4a LINE L1 -4 6117 5950 840 156 11 102 chr1 227515939 227516125 -54677539 + FRAM SINE Alu 1 164 -12 96 38 0 0 chr1 227516125 227516256 -54677408 + AT_rich Low_complexity Low_complexity 1 131 0 22 35 0 0 chr1 227516385 227516414 -54677250 + AT_rich Low_complexity Low_complexity 1 29 0 1215 142 37 46 chr1 227516727 227516945 -54676719 - AluJo SINE Alu -13 299 84 202 138 0 0 chr1 227517017 227517046 -54676618 + L2 LINE L2 3219 3247 -25 * 225 37 0 0 chr1 227517020 227517047 -54676617 + MIR SINE MIR 218 244 -18 328 315 9 9 chr1 227519274 227519382 -54674282 - L2 LINE L2 -7 3306 3199 3214 237 55 52 chr1 227519386 227520288 -54673376 + L1MC4 LINE L1 6750 7659 -383 369 0 0 0 chr1 227520288 227520329 -54673335 + (CA)n Simple_repeat Simple_repeat 1 41 0 3214 237 55 52 chr1 227520329 227520714 -54672950 + L1MC4 LINE L1 7659 8041 -1 2351 91 0 0 chr1 227521266 227521563 -54672101 - AluSx SINE Alu -15 297 1 249 341 12 0 chr1 227522028 227522110 -54671554 - L2 LINE L2 0 3313 3231 286 272 176 71 chr1 227522408 227522731 -54670933 - L2 LINE L2 -785 2529 2173 361 294 111 0 chr1 227522987 227523113 -54670551 + MIR3 SINE MIR 19 158 -50 5564 162 16 15 chr1 227523356 227523815 -54669849 - L1MA7 LINE L1 -4 6287 5830 2240 87 3 32 chr1 227523815 227524126 -54669538 - AluSq SINE Alu -11 302 1 5564 162 16 15 chr1 227524126 227524771 -54668893 - L1MA7 LINE L1 -461 5830 5177 1437 134 24 0 chr1 227524770 227525023 -54668641 + L1MA7 LINE L1 4908 5166 -980 * 21 71 0 0 chr1 227525075 227525117 -54668547 + AT_rich Low_complexity Low_complexity 1 42 0 739 118 39 0 chr1 227525249 227525402 -54668262 + CT-rich Low_complexity Low_complexity 3 161 0 752 207 21 0 chr1 227525404 227525544 -54668120 - FLAM_C SINE Alu 0 143 1 625 216 116 47 chr1 227525866 227526098 -54667566 + LTR16A1 LTR ERVL 210 457 0 33 0 0 0 chr1 227526195 227526228 -54667436 + AT_rich Low_complexity Low_complexity 1 33 0 949 128 0 0 chr1 227526432 227526565 -54667099 - AluSq/x SINE Alu -179 133 1 530 271 82 0 chr1 227526565 227526735 -54666929 - MIR SINE MIR -59 203 20 24 0 0 0 chr1 227528580 227528604 -54665060 + AT_rich Low_complexity Low_complexity 1 24 0 265 233 14 27 chr1 227528940 227529013 -54664651 - Charlie8 DNA MER1_type -1000 1417 1346 504 346 125 10 chr1 227530104 227530399 -54663265 - L3 LINE CR1 -10 1567 1239 268 250 0 26 chr1 227532890 227532966 -54660698 + MER103 DNA DNA 83 156 -10 3412 36 10 0 chr1 227533398 227533812 -54659852 - L1PA4 LINE L1 -1 6154 5737 2290 87 0 0 chr1 227533941 227534282 -54659382 - AluSx SINE Alu 0 341 1 313 250 45 23 chr1 227534820 227534908 -54658756 + L2 LINE L2 3223 3312 -1 1953 131 7 3 chr1 227535064 227535362 -54658302 + AluSc SINE Alu 1 299 -10 1518 153 4 19 chr1 227535511 227535773 -54657891 - AluJo SINE Alu -5 307 50 837 207 73 31 chr1 227536277 227536538 -54657126 - L1MC5 LINE L1 -51 7910 7639 209 237 13 13 chr1 227537514 227537590 -54656074 + (TATAA)n Simple_repeat Simple_repeat 1 76 0 371 301 149 23 chr1 227537611 227538047 -54655617 - L1ME4a LINE L1 -234 5887 5397 24 32 0 0 chr1 227538137 227538168 -54655496 + AT_rich Low_complexity Low_complexity 1 31 0 285 269 149 7 chr1 227538524 227538665 -54654999 - L1ME4a LINE L1 -1493 4653 4493 227 98 0 24 chr1 227538665 227538706 -54654958 - MLT2B1 LTR ERVL -17 503 464 192 123 44 35 chr1 227538804 227538918 -54654746 + (TTATA)n Simple_repeat Simple_repeat 5 119 0 * 354 155 71 0 chr1 227538913 227539081 -54654583 + (TA)n Simple_repeat Simple_repeat 1 180 0 264 157 72 0 chr1 227539110 227539276 -54654388 + (TA)n Simple_repeat Simple_repeat 2 179 0 1413 223 85 22 chr1 227539282 227539675 -54653989 - MLT2B1 LTR ERVL -45 475 4 731 309 91 39 chr1 227539758 227540459 -54653205 - L2 LINE L2 -15 3298 2567 477 221 0 0 chr1 227540661 227540747 -54652917 - Tigger7 DNA MER2_type -3 2484 2399 1144 244 0 28 chr1 227540769 227540807 -54652857 - Tigger7 DNA MER2_type -2225 262 224 2509 92 17 0 chr1 227540807 227541156 -54652508 - THE1A LTR MaLR 0 355 1 1144 244 0 28 chr1 227541156 227541367 -54652297 - Tigger7 DNA MER2_type -2263 224 20 1932 148 3 0 chr1 227541433 227541723 -54651941 - AluSx SINE Alu -21 291 1 1136 207 15 41 chr1 227541755 227542021 -54651643 - AluJo SINE Alu -31 281 23 239 346 57 43 chr1 227542427 227542614 -54651050 - MIR SINE MIR -61 147 4 186 43 0 0 chr1 227543075 227543098 -54650566 + (A)n Simple_repeat Simple_repeat 1 23 0 2224 186 38 5 chr1 227543246 227543644 -54650020 + MSTB LTR MaLR 1 411 -15 337 353 28 38 chr1 227544533 227544853 -54648811 + MER110A-int LTR ERV1 1270 1586 -5215 892 190 99 53 chr1 227545098 227545501 -54648163 - MLT2B1 LTR ERVL 0 520 67 263 143 16 151 chr1 227545519 227545645 -54648019 - MLT2B1 LTR ERVL -406 109 1 1487 110 50 0 chr1 227545663 227545882 -54647782 - MER30 DNA MER1_type 0 230 1 693 322 84 37 chr1 227545929 227546419 -54647245 + MER110A-int LTR ERV1 1850 2362 -4439 209 111 0 67 chr1 227546724 227546769 -54646895 + (CAAAC)n Simple_repeat Simple_repeat 2 43 0 1505 304 39 75 chr1 227546770 227547624 -54646040 + MER110A-int LTR ERV1 212 1034 -3613 744 264 73 104 chr1 227547893 227548549 -54645115 + MER110A-int LTR ERV1 1207 1842 -2805 4922 237 56 40 chr1 227548562 227548753 -54644911 + MER110A-int LTR ERV1 3092 3279 -1368 1689 221 106 12 chr1 227548753 227549179 -54644485 - MLT1C LTR MaLR -1 466 1 4922 237 56 40 chr1 227549179 227550474 -54643190 + MER110A-int LTR ERV1 3279 4601 -46 2363 151 48 17 chr1 227550501 227550919 -54642745 + MLT1C LTR MaLR 37 467 0 1671 192 30 82 chr1 227551054 227551562 -54642102 + MER110A LTR ERV1 23 484 0 543 234 152 13 chr1 227551848 227552006 -54641658 + MER5A DNA MER1_type 9 188 -1 243 304 89 57 chr1 227552228 227552386 -54641278 + MIR SINE MIR 50 212 -50 275 104 21 0 chr1 227552632 227552680 -54640984 + (TTTCC)n Simple_repeat Simple_repeat 4 52 0 273 160 20 0 chr1 227552681 227552731 -54640933 + CT-rich Low_complexity Low_complexity 3 53 0 963 284 79 54 chr1 227552733 227553176 -54640488 - L2 LINE L2 -5 3308 2855 245 225 45 108 chr1 227553452 227553563 -54640101 - MLT1K LTR MaLR -7 581 478 454 332 32 25 chr1 227553764 227554038 -54639626 - MLT1K LTR MaLR -335 280 20 1354 231 21 24 chr1 227554068 227554397 -54639267 + MER58B DNA MER1_type 9 336 -5 2157 135 16 44 chr1 227554397 227554783 -54638881 - THE1C LTR MaLR 0 375 1 10011 115 51 5 chr1 227554783 227556294 -54637370 - THE1C-int LTR MaLR 0 1580 1 2091 128 29 27 chr1 227556294 227556668 -54636996 - THE1C LTR MaLR 0 375 1 310 300 40 20 chr1 227556685 227556835 -54636829 - MLT1K LTR MaLR -40 548 396 484 350 50 27 chr1 227556858 227557155 -54636509 - MLT1K LTR MaLR -162 426 123 24 32 0 0 chr1 227558153 227558184 -54635480 + AT_rich Low_complexity Low_complexity 1 31 0 1524 148 47 4 chr1 227558196 227558452 -54635212 + AluJb SINE Alu 40 306 -6 206 333 0 12 chr1 227558770 227558851 -54634813 + L2 LINE L2 3215 3294 -19 357 373 0 8 chr1 227559649 227559767 -54633897 + L2 LINE L2 3154 3270 -2 414 89 0 0 chr1 227561109 227561165 -54632499 - MSTB LTR MaLR 0 426 371 2672 75 70 0 chr1 227561202 227561573 -54632091 - L1PA8 LINE L1 -13 6159 5763 2465 158 5 8 chr1 227561573 227561960 -54631704 - MSTB LTR MaLR -40 386 1 1770 247 60 24 chr1 227561981 227562014 -54631650 - MLT2B1 LTR ERVL 0 520 490 207 0 0 0 chr1 227562014 227562037 -54631627 + (TG)n Simple_repeat Simple_repeat 2 24 0 1770 247 60 24 chr1 227562037 227562505 -54631159 - MLT2B1 LTR ERVL -30 490 1 2268 80 0 13 chr1 227562863 227563163 -54630501 - AluY SINE Alu -15 296 1 250 333 99 0 chr1 227563166 227563307 -54630357 - MLT1L LTR MaLR -340 275 121 1666 238 57 40 chr1 227563667 227564138 -54629526 + MLT1G LTR MaLR 37 515 -75 2292 224 53 22 chr1 227564138 227564738 -54628926 + MLT1G LTR MaLR 1 590 0 244 105 88 18 chr1 227564738 227564789 -54628875 + MLT1H LTR MaLR 470 524 -25 295 301 74 111 chr1 227564803 227565155 -54628509 + L2 LINE L2 2430 2768 -546 2235 100 3 3 chr1 227565404 227565703 -54627961 + AluSx SINE Alu 5 303 -9 988 232 165 38 chr1 227565936 227566384 -54627280 - MLT1D LTR MaLR 0 505 1 2463 53 3 7 chr1 227566430 227566732 -54626932 - AluY SINE Alu -10 301 1 255 251 123 82 chr1 227567249 227567444 -54626220 - MLT1J LTR MaLR -214 297 95 1571 212 41 50 chr1 227567750 227568213 -54625451 - LTR40b LTR ERVL -3 459 1 1593 124 51 0 chr1 227568966 227569132 -54624532 - AluSx SINE Alu -11 301 118 213 39 0 0 chr1 227569132 227569158 -54624506 + (TA)n Simple_repeat Simple_repeat 2 27 0 1593 124 51 0 chr1 227569158 227569225 -54624439 - AluSx SINE Alu -194 118 56 309 270 70 92 chr1 227570581 227570722 -54622942 - MER5A DNA MER1_type -2 187 49 297 0 0 0 chr1 227570722 227570755 -54622909 + (TAA)n Simple_repeat Simple_repeat 1 33 0 309 270 70 92 chr1 227570755 227570798 -54622866 - MER5A DNA MER1_type -140 49 7 309 248 92 9 chr1 227570842 227570951 -54622713 + MIR SINE MIR 102 219 -43 203 294 63 63 chr1 227571808 227571934 -54621730 - L3b LINE CR1 -338 1245 1120 2315 114 33 19 chr1 227572173 227572532 -54621132 + THE1B LTR MaLR 1 364 0 241 197 40 0 chr1 227572992 227573068 -54620596 - L1ME4a LINE L1 -3 6118 6040 1906 110 0 110 chr1 227573225 227573561 -54620103 + AluSq SINE Alu 1 299 -4 246 278 9 83 chr1 227575089 227575197 -54618467 - MIR SINE MIR -87 121 22 657 284 11 68 chr1 227575338 227575602 -54618062 + MIR SINE MIR 5 253 -9 793 268 40 22 chr1 227576451 227576679 -54616985 + MIR SINE MIR 31 262 0 1646 174 14 7 chr1 227577188 227577498 -54616166 + AluJo SINE Alu 1 312 0 226 345 35 29 chr1 227577897 227578068 -54615596 + MER5A DNA MER1_type 17 188 -1 2337 283 92 16 chr1 227578276 227578641 -54615023 - L2 LINE L2 -5 3308 2972 1410 217 133 35 chr1 227578641 227578902 -54614762 - MLT1D LTR MaLR 0 505 271 291 54 0 0 chr1 227578902 227578939 -54614725 + (TG)n Simple_repeat Simple_repeat 2 38 0 1410 217 133 35 chr1 227578939 227579137 -54614527 - MLT1D LTR MaLR -234 271 1 2337 283 92 16 chr1 227579137 227579837 -54613827 - L2 LINE L2 -341 2972 2170 2612 94 103 0 chr1 227579837 227580243 -54613421 + LTR7 LTR ERV1 1 448 -2 18242 96 10 54 chr1 227580245 227583368 -54610296 + HERVH LTR ERV1 1 2987 -4726 744 162 21 0 chr1 227583368 227583510 -54610154 + HERVH LTR ERV1 3146 3290 -4423 * 10598 85 28 39 chr1 227583500 227585174 -54608490 + HERVH LTR ERV1 3492 5146 -2567 1254 129 23 9 chr1 227585178 227585395 -54608269 + HERVH LTR ERV1 5600 5819 -1894 2167 104 56 13 chr1 227585395 227585769 -54607895 + HERVH LTR ERV1 7324 7713 0 2811 78 98 0 chr1 227585769 227586177 -54607487 + LTR7 LTR ERV1 1 448 -2 2486 266 176 8 chr1 227586178 227587272 -54606392 - L2 LINE L2 -1139 2175 899 515 253 123 69 chr1 227587272 227587756 -54605908 + MLT1H LTR MaLR 1 547 -2 2559 262 82 14 chr1 227587756 227588497 -54605167 - L2 LINE L2 -2409 905 114 207 0 0 0 chr1 227588655 227588678 -54604986 + (ATGGTG)n Simple_repeat Simple_repeat 6 28 0 818 266 208 50 chr1 227588961 227589321 -54604343 + L2 LINE L2 2375 2811 -503 843 225 114 38 chr1 227589321 227589637 -54604027 + MER58B DNA MER1_type 2 341 0 818 266 208 50 chr1 227589637 227589694 -54603970 + L2 LINE L2 2811 2858 -456 1295 210 60 66 chr1 227590432 227590950 -54602714 - L1ME1 LINE L1 0 6166 5652 3329 99 20 0 chr1 227590963 227591457 -54602207 - L1MA4A LINE L1 -11 6292 5789 186 71 0 0 chr1 227591526 227591554 -54602110 + (TA)n Simple_repeat Simple_repeat 1 28 0 217 283 0 0 chr1 227591555 227591608 -54602056 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 212 152 43 0 chr1 227591626 227591672 -54601992 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 1091 316 79 3 chr1 227591831 227592186 -54601478 + L2 LINE L2 114 495 -2819 2729 185 50 3 chr1 227592188 227593252 -54600412 - L1 LINE L1 -3373 3475 2362 320 235 0 0 chr1 227593272 227593340 -54600324 - L1 LINE L1 -5415 1434 1367 * 1464 174 12 12 chr1 227593339 227593752 -54599912 - L1M2 LINE L1 -4488 2361 1884 * 12369 157 16 14 chr1 227593729 227593910 -54599754 - L1MA2 LINE L1 0 7006 6827 1886 141 7 7 chr1 227593910 227594200 -54599464 - AluSx SINE Alu -22 290 1 12369 157 16 14 chr1 227594200 227596308 -54597356 - L1MA2 LINE L1 -179 6827 4708 1972 143 153 3 chr1 227596308 227596680 -54596984 - MSTA LTR MaLR 0 428 1 12369 157 16 14 chr1 227596680 227597892 -54595772 - L1MA2 LINE L1 -2298 4708 3499 8359 164 302 9 chr1 227597893 227598023 -54595641 - L1MA2 LINE L1 -4576 2989 2898 234 0 0 0 chr1 227598023 227598049 -54595615 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 8359 164 302 9 chr1 227598049 227599993 -54593671 - L1MA2 LINE L1 -4667 2898 306 1233 144 6 11 chr1 227600003 227600183 -54593481 - AluJo SINE Alu -131 181 3 310 55 0 55 chr1 227600186 227600229 -54593435 - L1M2 LINE L1 -4958 1891 1850 186 43 0 0 chr1 227600229 227600252 -54593412 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 310 55 0 55 chr1 227600252 227600263 -54593401 - L1M2 LINE L1 -4999 1850 1840 693 204 0 0 chr1 227600429 227600542 -54593122 + FLAM_A SINE Alu 2 114 -19 536 176 30 17 chr1 227600543 227600669 -54592995 - MSTA LTR MaLR -82 350 205 9599 205 9 3 chr1 227600669 227602509 -54591155 - L1M2 LINE L1 -4998 2568 718 5283 213 45 40 chr1 227602511 227604217 -54589447 - L1ME LINE L1 -497 5669 3960 935 138 7 0 chr1 227604217 227604369 -54589295 - L1PB3 LINE L1 -1 6153 6001 5283 213 45 40 chr1 227604369 227604714 -54588950 - L1ME LINE L1 -2206 3960 3618 231 303 77 14 chr1 227604955 227605176 -54588488 - L1ME LINE L1 -295 5826 5592 23 68 0 0 chr1 227605784 227605828 -54587836 + AT_rich Low_complexity Low_complexity 1 44 0 2788 190 45 2 chr1 227605834 227605874 -54587790 - MLT2B3 LTR ERVL 0 554 517 477 0 0 0 chr1 227605874 227605927 -54587737 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2788 190 45 2 chr1 227605927 227606204 -54587460 - MLT2B3 LTR ERVL -37 517 202 411 21 0 0 chr1 227606204 227606252 -54587412 + (GA)n Simple_repeat Simple_repeat 1 48 0 2788 190 45 2 chr1 227606252 227606464 -54587200 - MLT2B3 LTR ERVL -352 202 1 7357 154 15 3 chr1 227606466 227607723 -54585941 - ERVL-B3 LTR ERVL -9 5755 4484 763 191 23 0 chr1 227608003 227608134 -54585530 + AluJo SINE Alu 6 139 -173 890 314 39 47 chr1 227608223 227608691 -54584973 + LTR16B LTR ERVL 1 464 0 2113 125 3 0 chr1 227608814 227609102 -54584562 - AluSx SINE Alu -19 293 5 23 33 0 0 chr1 227609946 227609976 -54583688 + AT_rich Low_complexity Low_complexity 1 30 0 249 83 0 0 chr1 227611043 227611079 -54582585 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 276 274 41 0 chr1 227611102 227611175 -54582489 + MIR SINE MIR 116 191 -71 1119 218 116 0 chr1 227611272 227611575 -54582089 + MER20B DNA MER1_type 28 365 -418 25 31 0 0 chr1 227611910 227611942 -54581722 + AT_rich Low_complexity Low_complexity 1 32 0 591 35 0 35 chr1 227612090 227612175 -54581489 + L1PA2 LINE L1 6072 6153 -2 526 286 142 62 chr1 227612247 227612782 -54580882 - HAL1 LINE L1 -710 1797 1220 402 237 193 22 chr1 227612823 227612958 -54580706 + MIR SINE MIR 89 246 -16 34 42 0 0 chr1 227613247 227613295 -54580369 + AT_rich Low_complexity Low_complexity 1 48 0 2889 147 60 49 chr1 227613686 227614184 -54579480 - MER41D LTR ERV1 0 557 51 2219 105 3 35 chr1 227614184 227614499 -54579165 + AluSg1 SINE Alu 3 307 -2 2889 147 60 49 chr1 227614499 227614551 -54579113 - MER41D LTR ERV1 -506 51 1 343 250 0 15 chr1 227614783 227614851 -54578813 - Tigger2 DNA MER2_type -10 2708 2642 926 163 24 0 chr1 227614899 227615065 -54578599 - L1PA16 LINE L1 -2 6164 5995 856 138 121 0 chr1 227615073 227615247 -54578417 - Tigger2 DNA MER2_type -60 2658 2464 2836 147 9 31 chr1 227615288 227615838 -54577826 - Tigger2 DNA MER2_type -2180 538 1 1143 297 82 45 chr1 227615862 227616951 -54576713 - L1MEd LINE L1 -4888 1231 103 1413 187 0 0 chr1 227617182 227617412 -54576252 - AluJo SINE Alu -82 230 1 235 278 0 14 chr1 227618033 227618105 -54575559 - HAL1 LINE L1 -2432 75 5 395 225 90 0 chr1 227618175 227618286 -54575378 - L1ME3A LINE L1 -13 6157 6037 181 320 0 0 chr1 227619280 227619330 -54574334 - L2 LINE L2 -547 2767 2718 27 62 0 0 chr1 227619900 227619948 -54573716 + AT_rich Low_complexity Low_complexity 1 48 0 449 96 0 14 chr1 227620742 227620815 -54572849 + (TCCC)n Simple_repeat Simple_repeat 4 75 0 1738 170 4 4 chr1 227621651 227621927 -54571737 + AluSx SINE Alu 1 276 -36 342 0 0 0 chr1 227621930 227621968 -54571696 + (CA)n Simple_repeat Simple_repeat 1 38 0 209 268 0 0 chr1 227622084 227622125 -54571539 - MIR SINE MIR -83 125 85 232 313 116 27 chr1 227622228 227622340 -54571324 - MIR SINE MIR -68 140 19 7659 23 0 0 chr1 227622341 227623834 -54569830 - L1PA2 LINE L1 0 6155 4660 1729 237 52 63 chr1 227624442 227625152 -54568512 - LTR19C LTR ERV1 0 779 1 1987 112 29 83 chr1 227625477 227625656 -54568008 + THE1B LTR MaLR 1 149 -215 2388 83 0 10 chr1 227625656 227625968 -54567696 + AluY SINE Alu 3 311 0 1987 112 29 83 chr1 227625968 227626173 -54567491 + THE1B LTR MaLR 149 364 0 27 29 0 0 chr1 227626458 227626492 -54567172 + AT_rich Low_complexity Low_complexity 1 34 0 457 176 80 0 chr1 227627483 227627608 -54566056 + MER69 DNA AcHobo 2299 2433 -93 397 160 0 231 chr1 227629268 227629437 -54564227 - MER91B DNA MER1_type -60 130 1 312 51 0 0 chr1 227629687 227629726 -54563938 + 5S rRNA rRNA 1 39 -82 21 0 0 0 chr1 227630129 227630150 -54563514 + AT_rich Low_complexity Low_complexity 1 21 0 376 342 43 6 chr1 227630237 227630398 -54563266 + MER5B DNA MER1_type 1 167 -11 2213 108 0 0 chr1 227630502 227630798 -54562866 + AluSg1 SINE Alu 1 296 -13 198 216 0 0 chr1 227631730 227631804 -54561860 + (TTA)n Simple_repeat Simple_repeat 1 74 0 25 0 0 0 chr1 227631853 227631878 -54561786 + AT_rich Low_complexity Low_complexity 1 25 0 234 91 0 0 chr1 227632465 227632498 -54561166 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 2092 140 26 34 chr1 227632605 227632983 -54560681 - THE1C LTR MaLR 0 375 1 210 324 15 0 chr1 227633059 227633127 -54560537 - L2 LINE L2 -212 3060 2992 24 32 0 0 chr1 227634522 227634553 -54559111 + AT_rich Low_complexity Low_complexity 1 31 0 274 281 0 0 chr1 227634868 227634950 -54558714 - L1ME4a LINE L1 -75 6046 5965 340 266 126 5 chr1 227635112 227635311 -54558353 - L1ME4a LINE L1 -233 5888 5666 252 260 52 52 chr1 227635598 227635694 -54557970 - MIR SINE MIR -21 241 146 26 50 0 0 chr1 227635959 227635999 -54557665 + AT_rich Low_complexity Low_complexity 1 40 0 1066 255 103 56 chr1 227636318 227636784 -54556880 - L2 LINE L2 -9 3304 2817 355 338 30 0 chr1 227637034 227637167 -54556497 - LTR16A LTR ERVL -300 150 14 639 332 88 48 chr1 227637176 227637539 -54556125 + L1M4 LINE L1 3833 4180 -1966 2590 43 0 0 chr1 227637539 227637842 -54555822 - AluY SINE Alu -8 303 1 639 332 88 48 chr1 227637842 227637965 -54555699 + L1M4 LINE L1 4180 4297 -1849 1112 197 23 5 chr1 227637965 227638183 -54555481 - MER58A DNA MER1_type -2 222 1 639 332 88 48 chr1 227638183 227638403 -54555261 + L1M4 LINE L1 4297 4568 -1578 389 266 96 27 chr1 227638490 227638678 -54554986 - L1MC/D LINE L1 -2019 5789 5589 2091 166 17 6 chr1 227638850 227639211 -54554453 - MLT1A1 LTR MaLR 0 365 1 214 257 40 14 chr1 227639452 227639526 -54554138 + L2 LINE L2 2997 3072 -241 * 406 282 65 65 chr1 227639512 227639682 -54553982 - MIR SINE MIR -92 170 1 265 267 209 9 chr1 227640622 227640727 -54552937 - L2 LINE L2 -6 3266 3141 639 223 14 14 chr1 227640936 227641075 -54552589 + MIR SINE MIR 74 212 -50 709 310 98 3 chr1 227641885 227642201 -54551463 + HAL1 LINE L1 1528 1873 -634 279 254 21 56 chr1 227642722 227642864 -54550800 + HAL1b LINE L1 755 891 -457 853 291 156 21 chr1 227643017 227643440 -54550224 + MLT1J LTR MaLR 1 480 -31 351 292 57 68 chr1 227643475 227643667 -54549997 + HAL1 LINE L1 2318 2507 0 213 379 40 48 chr1 227643836 227644087 -54549577 - L2 LINE L2 -1212 2102 1854 1576 307 133 27 chr1 227644088 227644954 -54548710 - L2 LINE L2 -385 2929 1962 1031 196 186 35 chr1 227644954 227645326 -54548338 + MSTC LTR MaLR 1 428 0 1576 307 133 27 chr1 227645326 227645360 -54548304 - L2 LINE L2 -1352 1962 1933 28 48 0 0 chr1 227647398 227647440 -54546224 + AT_rich Low_complexity Low_complexity 1 42 0 213 262 33 0 chr1 227648291 227648352 -54545312 - MIR3 SINE MIR -7 201 139 243 262 4 30 chr1 227648903 227648986 -54544678 + MIR SINE MIR 23 75 -133 272 350 163 5 chr1 227649341 227649544 -54544120 - MIR SINE MIR -8 254 20 29 28 0 0 chr1 227649850 227649886 -54543778 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 227650306 227650330 -54543334 + AT_rich Low_complexity Low_complexity 1 24 0 829 184 7 0 chr1 227650824 227650976 -54542688 + MSTD LTR MaLR 1 153 -243 3288 117 32 72 chr1 227650977 227651592 -54542072 + LTR59 LTR ERV1 1 591 -6 364 184 13 0 chr1 227651652 227651728 -54541936 + MSTD LTR MaLR 320 396 0 1888 231 29 5 chr1 227651730 227652172 -54541492 + MSTD-int LTR MaLR 2 454 -1281 2971 179 39 68 chr1 227652178 227652893 -54540771 - LTR8A LTR ERV1 0 727 34 1371 251 75 5 chr1 227652910 227653322 -54540342 + MSTD-int LTR MaLR 409 823 -828 * 2693 238 65 7 chr1 227653316 227653944 -54539720 + MSTD-int LTR MaLR 1026 1735 0 1381 224 101 19 chr1 227653944 227654310 -54539354 + MSTD LTR MaLR 1 396 0 1803 209 43 47 chr1 227654808 227655314 -54538350 + MLT1D LTR MaLR 1 504 -1 251 329 58 53 chr1 227655553 227655778 -54537886 + MIR SINE MIR 37 262 0 447 242 197 0 chr1 227656049 227656181 -54537483 + MIR SINE MIR 49 206 -56 39 60 0 0 chr1 227656317 227656384 -54537280 + AT_rich Low_complexity Low_complexity 1 67 0 189 0 0 0 chr1 227657722 227657743 -54535921 + (A)n Simple_repeat Simple_repeat 1 21 0 234 0 0 0 chr1 227658563 227658589 -54535075 + (CA)n Simple_repeat Simple_repeat 1 26 0 276 158 122 0 chr1 227658930 227659012 -54534652 - MLT1H LTR MaLR -2 540 449 706 248 89 51 chr1 227659069 227659383 -54534281 - MLT1H LTR MaLR -221 328 3 197 194 32 81 chr1 227659546 227659608 -54534056 + L2 LINE L2 3254 3312 -1 2205 69 0 0 chr1 227660387 227660647 -54533017 - AluY SINE Alu -18 293 34 2380 90 0 0 chr1 227661159 227661460 -54532204 + AluSg SINE Alu 1 301 -9 207 301 75 11 chr1 227661554 227661647 -54532017 + L2 LINE L2 2956 3054 -218 332 313 37 8 chr1 227662701 227662835 -54530829 - L2 LINE L2 -970 2344 2207 1790 185 0 7 chr1 227662910 227663208 -54530456 + AluJo SINE Alu 4 299 -13 29 47 0 0 chr1 227663531 227663574 -54530090 + AT_rich Low_complexity Low_complexity 1 43 0 1537 205 3 19 chr1 227664501 227664813 -54528851 - AluJb SINE Alu 0 312 6 285 250 0 0 chr1 227664905 227664969 -54528695 + L2 LINE L2 3250 3313 0 191 262 0 16 chr1 227665736 227665797 -54527867 - MIR SINE MIR -101 161 102 358 302 34 49 chr1 227667068 227667273 -54526391 + HAL1b LINE L1 421 622 -726 324 291 63 37 chr1 227667806 227667995 -54525669 + L1M4 LINE L1 2211 2404 -3742 401 323 32 0 chr1 227668271 227668429 -54525235 - MER103 DNA DNA 0 166 4 252 0 0 0 chr1 227668447 227668475 -54525189 + (TTG)n Simple_repeat Simple_repeat 3 30 0 324 70 0 0 chr1 227669559 227669602 -54524062 + (TG)n Simple_repeat Simple_repeat 1 43 0 193 283 174 22 chr1 227669653 227669745 -54523919 + MIR SINE MIR 34 139 -69 23 0 0 0 chr1 227671742 227671765 -54521899 + AT_rich Low_complexity Low_complexity 1 23 0 186 267 0 0 chr1 227673061 227673106 -54520558 + L2 LINE L2 3224 3268 -4 358 253 48 0 chr1 227673476 227673559 -54520105 - L2 LINE L2 -1 3271 3185 22 0 0 0 chr1 227674174 227674196 -54519468 + AT_rich Low_complexity Low_complexity 1 22 0 1126 208 50 21 chr1 227674421 227674580 -54519084 - AluJo SINE Alu -25 287 134 261 0 0 0 chr1 227674580 227674609 -54519055 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr1 227674611 227674631 -54519033 + (TTAG)n Simple_repeat Simple_repeat 4 23 0 1126 208 50 21 chr1 227674631 227674708 -54518956 - AluJo SINE Alu -178 134 41 207 0 0 0 chr1 227674930 227674953 -54518711 + (T)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr1 227675130 227675159 -54518505 + AT_rich Low_complexity Low_complexity 1 29 0 255 31 0 0 chr1 227676136 227676168 -54517496 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 897 254 87 23 chr1 227676364 227676628 -54517036 - MER70-int LTR ERVL -3 5527 5247 301 291 89 40 chr1 227677188 227677435 -54516229 - MER70-int LTR ERVL -3599 1424 1166 407 327 71 12 chr1 227678002 227678256 -54515408 - LTR40b LTR ERVL -39 423 155 251 289 52 21 chr1 227678590 227678687 -54514977 - MIR SINE MIR -112 150 51 204 224 41 0 chr1 227680309 227680358 -54513306 + MIR3 SINE MIR 158 208 0 540 245 134 11 chr1 227680879 227681205 -54512459 - L1MC/D LINE L1 -434 5736 5325 298 315 35 53 chr1 227681242 227681674 -54511990 - L1MC/D LINE L1 -869 5277 4854 676 240 55 68 chr1 227681867 227682159 -54511505 - L1MC/D LINE L1 -2734 3412 3125 6650 140 24 7 chr1 227682312 227683462 -54510202 + L1P LINE L1 2746 3915 -2231 225 0 0 0 chr1 227683776 227683801 -54509863 + (T)n Simple_repeat Simple_repeat 1 25 0 260 91 0 0 chr1 227684207 227684240 -54509424 - U2 snRNA snRNA -155 33 1 608 269 41 45 chr1 227684294 227684539 -54509125 + MLT1K LTR MaLR 330 573 -15 471 309 184 30 chr1 227684557 227685085 -54508579 + L2 LINE L2 1798 2406 -908 292 175 0 48 chr1 227685280 227685343 -54508321 + MIR SINE MIR 172 231 -31 859 252 156 84 chr1 227685390 227685866 -54507798 - MLT1G1 LTR MaLR -4 591 82 2003 233 70 27 chr1 227686145 227686698 -54506966 + MER119 DNA MER1_type 1 577 -6 458 310 204 0 chr1 227687678 227688001 -54505663 + L2 LINE L2 1812 2200 -1114 2088 110 0 7 chr1 227688035 227688327 -54505337 + AluSx SINE Alu 1 290 -22 262 324 46 9 chr1 227688374 227688482 -54505182 - L2 LINE L2 -8 3264 3153 821 245 20 10 chr1 227688619 227688819 -54504845 - MIR SINE MIR -42 220 19 350 328 93 11 chr1 227688857 227689040 -54504624 - MIR SINE MIR -42 220 23 208 0 62 0 chr1 227690321 227690353 -54503311 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 546 148 104 82 chr1 227691189 227691242 -54502422 + MER53 DNA DNA 3 53 -136 1969 129 14 20 chr1 227691242 227691537 -54502127 + AluSx SINE Alu 1 293 -19 546 148 104 82 chr1 227691537 227691666 -54501998 + MER53 DNA DNA 53 189 0 246 300 0 29 chr1 227692831 227692901 -54500763 - MIR3 SINE MIR -8 200 133 227 276 86 9 chr1 227693200 227693305 -54500359 + L1ME LINE L1 5369 5481 -640 1282 151 56 35 chr1 227693496 227693803 -54499861 + LTR54 LTR ERV1 1 416 -94 3867 188 26 51 chr1 227693803 227694797 -54498867 - LTR5 LTR ERVK 0 969 1 1282 151 56 35 chr1 227694797 227694895 -54498769 + LTR54 LTR ERV1 416 510 0 244 258 45 0 chr1 227694898 227694964 -54498700 + L2 LINE L2 2272 2340 -974 416 296 5 82 chr1 227695050 227695246 -54498418 + L2 LINE L2 2530 2710 -604 1957 309 127 18 chr1 227695279 227695759 -54497905 - L2 LINE L2 -505 2809 2383 2410 55 10 0 chr1 227695759 227696109 -54497555 + AluY SINE Alu 1 353 0 1957 309 127 18 chr1 227696109 227696463 -54497201 - L2 LINE L2 -931 2383 1882 192 277 0 0 chr1 227696484 227696531 -54497133 + L2 LINE L2 2710 2756 -558 466 312 51 6 chr1 227696743 227696900 -54496764 + MIR SINE MIR 2 165 -97 2297 76 20 0 chr1 227696901 227697202 -54496462 + AluY SINE Alu 1 307 -4 2157 72 26 20 chr1 227697217 227697521 -54496143 + AluY SINE Alu 2 307 -4 689 292 139 5 chr1 227697544 227697931 -54495733 + HAL1 LINE L1 1455 1893 -614 1705 147 71 37 chr1 227698242 227698399 -54495265 + MLT1A1 LTR MaLR 1 151 -214 2057 138 39 36 chr1 227698399 227698762 -54494902 + THE1B LTR MaLR 1 364 0 1705 147 71 37 chr1 227698762 227698957 -54494707 + MLT1A1 LTR MaLR 151 365 0 1181 199 113 51 chr1 227699077 227699448 -54494216 + MSTD LTR MaLR 1 394 -2 1336 309 132 19 chr1 227700097 227700884 -54492780 + L2 LINE L2 2440 3313 0 359 288 70 52 chr1 227700968 227701197 -54492467 + HAL1 LINE L1 2270 2502 -5 32 43 0 0 chr1 227701267 227701313 -54492351 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr1 227701613 227701639 -54492025 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr1 227701639 227701661 -54492003 + (GA)n Simple_repeat Simple_repeat 2 23 0 27 0 0 0 chr1 227701699 227701726 -54491938 + AT_rich Low_complexity Low_complexity 1 27 0 1693 91 0 0 chr1 227701726 227701956 -54491708 - L1PB1 LINE L1 -1 6150 5921 4338 156 12 7 chr1 227702024 227703419 -54490245 - L1PB1 LINE L1 -360 5791 4393 194 304 58 14 chr1 227704166 227704235 -54489429 - MER5A DNA MER1_type -98 91 20 726 276 85 34 chr1 227705034 227705159 -54488505 + L1ME1 LINE L1 3632 3749 -2397 300 27 0 0 chr1 227705159 227705196 -54488468 + (TG)n Simple_repeat Simple_repeat 1 37 0 726 276 85 34 chr1 227705196 227705519 -54488145 + L1ME1 LINE L1 3749 4114 -2032 2117 99 10 20 chr1 227705519 227705821 -54487843 - AluSx SINE Alu -13 299 1 726 276 85 34 chr1 227705821 227705903 -54487761 + L1ME1 LINE L1 4114 4190 -1956 6117 84 16 0 chr1 227705998 227707167 -54486497 - L1PB1 LINE L1 -1 6866 5673 15874 155 79 6 chr1 227707167 227711510 -54482154 - L1PB1 LINE L1 -1707 5155 428 2005 125 0 10 chr1 227711510 227711844 -54481820 - AluSx SINE Alu 0 331 1 15874 155 79 6 chr1 227711844 227712304 -54481360 - L1PB1 LINE L1 -6434 428 3 2235 162 30 30 chr1 227712388 227712852 -54480812 + MLT2C2 LTR ERVL 1 464 0 186 196 0 22 chr1 227713143 227713189 -54480475 - L2 LINE L2 -1 3312 3268 1105 179 93 88 chr1 227713543 227713895 -54479769 - MLT1A1 LTR MaLR -3 362 4 2298 244 71 37 chr1 227713895 227714927 -54478737 + L1ME1 LINE L1 4511 6122 -44 458 215 146 14 chr1 227714829 227714973 -54478691 + L1MA10 LINE L1 6169 6331 -3 * 404 336 57 26 chr1 227714993 227715258 -54478406 + L1 LINE L1 4786 5058 -1088 2034 216 43 49 chr1 227715795 227716447 -54477217 + L1MB7 LINE L1 2703 3350 -2796 454 147 0 27 chr1 227716447 227716522 -54477142 + Tigger2a DNA MER2_type 1 73 -361 897 226 0 11 chr1 227716556 227716733 -54476931 - MER8 DNA MER2_type -63 176 2 2785 184 40 22 chr1 227716734 227717381 -54476283 + L1MB7 LINE L1 3349 4007 -2139 2124 131 3 24 chr1 227717381 227717472 -54476192 + THE1C LTR MaLR 1 92 -283 2265 97 7 0 chr1 227717472 227717771 -54475893 - AluSp SINE Alu -11 302 2 2124 131 3 24 chr1 227717771 227718015 -54475649 + THE1C LTR MaLR 92 329 -46 351 355 50 83 chr1 227718231 227718628 -54475036 + L2 LINE L2 2888 3271 -1 3908 176 96 6 chr1 227719118 227720029 -54473635 + L1MB7 LINE L1 5175 6164 -20 331 215 13 0 chr1 227720147 227720226 -54473438 + L1ME4a LINE L1 5969 6048 -73 462 323 129 42 chr1 227720859 227721286 -54472378 - L2 LINE L2 -2718 596 133 286 308 22 0 chr1 227721447 227721538 -54472126 - MIR SINE MIR -14 248 156 367 235 181 20 chr1 227721539 227721688 -54471976 + MIR SINE MIR 66 238 -24 322 269 83 46 chr1 227721736 227721844 -54471820 - MIR SINE MIR -106 156 45 233 322 114 50 chr1 227721847 227722049 -54471615 + L2 LINE L2 2717 2931 -383 307 257 87 71 chr1 227722351 227722604 -54471060 + L1M2 LINE L1 1763 2019 -4830 1799 112 242 9 chr1 227722853 227723200 -54470464 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr1 227724246 227724283 -54469381 + AT_rich Low_complexity Low_complexity 1 37 0 579 287 118 30 chr1 227727177 227727414 -54466250 - MIR SINE MIR 0 262 5 823 260 39 48 chr1 227727607 227727919 -54465745 + MLT1J LTR MaLR 1 309 -202 1714 167 3 29 chr1 227728090 227728401 -54465263 - AluSx SINE Alu -5 307 5 679 206 0 47 chr1 227728679 227728849 -54464815 + MLT1A2 LTR MaLR 1 162 -212 2017 137 18 9 chr1 227728923 227729266 -54464398 - THE1A LTR MaLR -9 346 1 2253 176 43 74 chr1 227729266 227729573 -54464091 - THE1A-int LTR MaLR 0 1580 1403 450 83 28 0 chr1 227729573 227729645 -54464019 - Alu SINE Alu -3 308 235 2253 176 43 74 chr1 227729645 227729895 -54463769 - THE1A-int LTR MaLR -177 1403 1147 1809 112 242 9 chr1 227730053 227730400 -54463264 + MSTA LTR MaLR 1 428 0 207 305 9 38 chr1 227730820 227730925 -54462739 + CT-rich Low_complexity Low_complexity 3 104 0 7072 90 16 2 chr1 227731259 227732279 -54461385 - THE1A-int LTR MaLR -546 1034 1 2228 130 11 8 chr1 227732279 227732633 -54461031 - THE1A LTR MaLR 0 355 1 514 225 7 22 chr1 227732638 227732776 -54460888 + MLT1A2 LTR MaLR 239 374 0 21 0 0 0 chr1 227732978 227732999 -54460665 + AT_rich Low_complexity Low_complexity 1 21 0 1852 135 30 0 chr1 227733002 227733298 -54460366 - L1PA16 LINE L1 -9 6157 5853 586 276 108 0 chr1 227733525 227733728 -54459936 - MIR SINE MIR 0 262 38 445 329 67 36 chr1 227734342 227734567 -54459097 + MIR SINE MIR 21 252 -10 1136 281 63 18 chr1 227734949 227735390 -54458274 + HERV16 LTR ERVL 894 1354 -3642 943 180 9 51 chr1 227735394 227735611 -54458053 + MLT1D LTR MaLR 1 208 -297 210 37 0 0 chr1 227736576 227736603 -54457061 + (CA)n Simple_repeat Simple_repeat 1 27 0 187 186 17 17 chr1 227736604 227736663 -54457001 + CT-rich Low_complexity Low_complexity 3 61 0 2117 99 61 7 chr1 227736773 227737066 -54456598 - AluSx SINE Alu -3 309 1 187 304 101 0 chr1 227737850 227737919 -54455745 + L2 LINE L2 3188 3263 -9 213 146 0 0 chr1 227738057 227738105 -54455559 + (TA)n Simple_repeat Simple_repeat 2 49 0 686 256 17 0 chr1 227738123 227738295 -54455369 - MER119 DNA MER1_type -342 241 67 1916 128 63 41 chr1 227738381 227738748 -54454916 - THE1C LTR MaLR 0 375 1 248 331 128 29 chr1 227739101 227739273 -54454391 - MER5A DNA MER1_type 0 189 1 2508 76 0 0 chr1 227739524 227739828 -54453836 - AluY SINE Alu -7 304 1 369 311 0 9 chr1 227739952 227740058 -54453606 + MER5B DNA MER1_type 2 106 -72 2458 74 3 0 chr1 227740438 227740748 -54452916 - AluY SINE Alu 0 311 1 25 0 0 0 chr1 227740819 227740844 -54452820 + AT_rich Low_complexity Low_complexity 1 25 0 376 169 169 0 chr1 227740935 227741018 -54452646 + L1ME2 LINE L1 5451 5547 -617 320 224 256 54 chr1 227741016 227741239 -54452425 + L1ME2 LINE L1 5888 6155 -9 * 263 253 81 0 chr1 227741371 227741458 -54452206 - MIR SINE MIR -52 210 117 436 241 246 42 chr1 227741945 227742181 -54451483 - MLT1K LTR MaLR -74 514 231 276 296 23 0 chr1 227742845 227742933 -54450731 + GA-rich Low_complexity Low_complexity 1 90 0 359 286 0 0 chr1 227743175 227743252 -54450412 + L2 LINE L2 2990 3066 -247 309 336 124 26 chr1 227743639 227743865 -54449799 - L3b LINE CR1 -39 1544 1297 213 94 0 0 chr1 227744790 227744822 -54448842 + (TA)n Simple_repeat Simple_repeat 1 32 0 231 61 0 0 chr1 227745874 227745907 -54447757 + (GA)n Simple_repeat Simple_repeat 2 34 0 2011 137 40 0 chr1 227747852 227748152 -54445512 + AluSx SINE Alu 1 312 0 1440 263 122 12 chr1 227748347 227749105 -54444559 + L2 LINE L2 2452 3313 0 1999 117 3 29 chr1 227749132 227749448 -54444216 - AluSq SINE Alu -5 308 1 588 271 64 30 chr1 227749581 227749817 -54443847 - MIR SINE MIR -3 259 16 321 277 100 119 chr1 227750462 227751000 -54442664 - L1M2 LINE L1 -5484 1365 838 225 94 0 0 chr1 227752806 227752838 -54440826 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 23 0 0 0 chr1 227753358 227753381 -54440283 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 227753827 227753848 -54439816 + AT_rich Low_complexity Low_complexity 1 21 0 411 234 172 7 chr1 227754807 227754952 -54438712 - MER58A DNA MER1_type -10 214 46 1870 135 3 71 chr1 227756730 227757056 -54436608 + AluJo SINE Alu 6 309 -3 747 159 8 8 chr1 227757473 227757599 -54436065 + FLAM_C SINE Alu 1 126 -17 189 0 0 0 chr1 227757600 227757621 -54436043 + (CAA)n Simple_repeat Simple_repeat 1 21 0 13484 116 24 66 chr1 227757958 227760455 -54433209 - Tigger1 DNA MER2_type 0 2418 26 1038 230 65 17 chr1 227760466 227760757 -54432907 - MLT1C LTR MaLR -3 464 160 21 36 0 0 chr1 227762919 227762947 -54430717 + AT_rich Low_complexity Low_complexity 1 28 0 2623 84 9 58 chr1 227764173 227764603 -54429061 + L1P LINE L1 3901 4309 -1837 23 33 0 0 chr1 227764687 227764717 -54428947 + AT_rich Low_complexity Low_complexity 1 30 0 4548 102 12 29 chr1 227764758 227765512 -54428152 - L1PA13 LINE L1 0 6163 5446 2188 89 14 14 chr1 227766004 227766295 -54427369 + AluSx SINE Alu 1 291 -21 26 50 0 0 chr1 227766316 227766356 -54427308 + AT_rich Low_complexity Low_complexity 1 40 0 233 259 74 0 chr1 227766887 227766941 -54426723 + MIR SINE MIR 32 89 -173 273 281 135 0 chr1 227767428 227767524 -54426140 + L2 LINE L2 3164 3272 0 238 286 79 0 chr1 227767525 227767588 -54426076 + MIR SINE MIR 168 235 -27 228 294 39 10 chr1 227768707 227768809 -54424855 - L1ME3A LINE L1 -60 6110 6006 847 316 61 45 chr1 227768907 227769549 -54424115 - HERV16 LTR ERVL -4344 652 1 492 277 148 10 chr1 227769558 227769899 -54423765 - LTR16A LTR ERVL -8 442 1 545 266 114 31 chr1 227770031 227770587 -54423077 - L1MEc LINE L1 -3619 3322 2756 261 183 84 0 chr1 227770694 227770765 -54422899 - L1MEc LINE L1 -4963 1460 1384 2291 125 0 0 chr1 227771005 227771316 -54422348 - AluSx SINE Alu -1 311 1 692 211 64 12 chr1 227771860 227772031 -54421633 + MER58A DNA MER1_type 45 224 0 1560 154 48 34 chr1 227773051 227773344 -54420320 - THE1B LTR MaLR -62 302 6 216 0 0 0 chr1 227774321 227774345 -54419319 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 1618 185 6 13 chr1 227774441 227774754 -54418910 + AluJo SINE Alu 1 311 -1 2481 46 7 3 chr1 227774903 227775208 -54418456 + AluY SINE Alu 1 306 -5 283 290 16 135 chr1 227775801 227775994 -54417670 + MER5B DNA MER1_type 8 177 -1 1703 224 106 18 chr1 227777909 227778417 -54415247 + L1ME1 LINE L1 5613 6165 -1 1022 207 19 5 chr1 227778955 227779168 -54414496 - AluJb SINE Alu -13 299 84 359 196 82 0 chr1 227779168 227779265 -54414399 + L1MA8 LINE L1 6179 6283 -8 249 224 0 0 chr1 227779613 227779671 -54413993 + (TA)n Simple_repeat Simple_repeat 1 58 0 259 194 16 0 chr1 227780112 227780174 -54413490 - L1MA5 LINE L1 -1 6299 6237 21 0 0 0 chr1 227780175 227780196 -54413468 + AT_rich Low_complexity Low_complexity 1 21 0 492 191 99 33 chr1 227780813 227780965 -54412699 + MER103 DNA DNA 1 162 -4 180 0 0 0 chr1 227780970 227780990 -54412674 + (T)n Simple_repeat Simple_repeat 1 20 0 328 361 87 40 chr1 227781051 227781372 -54412292 + L2 LINE L2 2916 3251 -21 224 231 0 19 chr1 227782587 227782639 -54411025 + CT-rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 227782859 227782883 -54410781 + AT_rich Low_complexity Low_complexity 1 24 0 3493 251 196 30 chr1 227783760 227785356 -54408308 + L2 LINE L2 1209 3309 -4 583 288 42 74 chr1 227785504 227785841 -54407823 + L2 LINE L2 332 657 -2657 647 265 37 42 chr1 227785888 227786103 -54407561 - MIR SINE MIR -15 247 34 400 418 42 8 chr1 227786335 227786694 -54406970 + L2 LINE L2 2511 2881 -433 1762 180 32 6 chr1 227787105 227787444 -54406220 - MER7A DNA MER2_type 0 346 1 268 50 0 0 chr1 227787823 227787863 -54405801 + Alu SINE Alu 261 300 -1 * 702 306 43 40 chr1 227787862 227788033 -54405631 - MARNA DNA Mariner -197 389 220 2082 115 3 20 chr1 227788033 227788337 -54405327 - AluSg SINE Alu -11 299 1 702 306 43 40 chr1 227788337 227788515 -54405149 - MARNA DNA Mariner -366 220 39 625 303 123 9 chr1 227788973 227789201 -54404463 + MIR SINE MIR 1 254 -8 611 304 110 36 chr1 227789332 227789668 -54403996 + L2 LINE L2 2382 2742 -572 792 243 79 27 chr1 227789730 227789818 -54403846 - AluSx SINE Alu 0 312 230 2167 76 38 3 chr1 227789818 227790106 -54403558 - AluY SINE Alu -13 298 1 792 243 79 27 chr1 227790106 227790309 -54403355 - AluSx SINE Alu -82 230 6 617 298 77 54 chr1 227790323 227790676 -54402988 + L2 LINE L2 2824 3184 -129 1926 181 90 5 chr1 227792232 227792537 -54401127 - Tigger2a DNA MER2_type -2275 433 85 186 43 0 0 chr1 227792537 227792560 -54401104 + (GGAGAA)n Simple_repeat Simple_repeat 6 28 0 1926 181 90 5 chr1 227792560 227792653 -54401011 - Tigger2a DNA MER2_type -2623 85 1 5766 168 39 5 chr1 227844114 227845749 -54347915 - L1PBb LINE L1 -4511 1693 1 2858 305 71 30 chr1 227845716 227847287 -54346377 - L1PBa LINE L1 -5226 1637 3 * 2503 11 0 0 chr1 227847993 227848270 -54345394 + AluYa5 SINE Alu 34 310 -1 348 296 30 40 chr1 227848401 227848600 -54345064 + L1ME LINE L1 5608 5804 -317 22 0 0 0 chr1 227848605 227848627 -54345037 + AT_rich Low_complexity Low_complexity 1 22 0 1351 212 42 7 chr1 227848630 227848913 -54344751 + AluJo SINE Alu 4 296 -16 1579 157 71 0 chr1 227848915 227849195 -54344469 + AluSx SINE Alu 1 300 -12 781 129 0 45 chr1 227849210 227849342 -54344322 + FLAM_C SINE Alu 1 126 -7 336 309 77 42 chr1 227849479 227849647 -54344017 + L2 LINE L2 3132 3305 -8 287 224 13 0 chr1 227849859 227849935 -54343729 + (TA)n Simple_repeat Simple_repeat 2 78 0 246 137 0 20 chr1 227849943 227849994 -54343670 + LTR66 LTR ERVL 394 443 -167 375 202 81 0 chr1 227850491 227850590 -54343074 - L1MA8 LINE L1 -6 6285 6179 1000 207 19 5 chr1 227850590 227850803 -54342861 + AluJb SINE Alu 84 299 -13 1732 224 106 18 chr1 227851341 227851849 -54341815 - L1ME1 LINE L1 -1 6165 5613 7548 24 5 0 chr1 227852405 227853726 -54339938 + L1PA3 LINE L1 4843 6175 0 440 241 43 71 chr1 227853846 227853987 -54339677 - L3 LINE CR1 -14 1563 1427 362 317 58 0 chr1 227853990 227854094 -54339570 - L2 LINE L2 -6 3266 3157 229 314 239 13 chr1 227854397 227854782 -54338882 - L3 LINE CR1 -319 1258 787 200 267 40 27 chr1 227855096 227855171 -54338493 - MIR SINE MIR -37 225 150 208 209 19 76 chr1 227855317 227855422 -54338242 + A-rich Low_complexity Low_complexity 2 100 0 1936 181 90 5 chr1 227857287 227857380 -54336284 + Tigger2a DNA MER2_type 1 85 -2623 186 43 0 0 chr1 227857380 227857403 -54336261 + (TTCTCC)n Simple_repeat Simple_repeat 6 28 0 1936 181 90 5 chr1 227857403 227857708 -54335956 + Tigger2a DNA MER2_type 85 433 -1 619 298 77 54 chr1 227859264 227859617 -54334047 - L2 LINE L2 -129 3184 2824 789 243 79 27 chr1 227859631 227859834 -54333830 + AluSx SINE Alu 6 230 -82 2130 76 38 3 chr1 227859834 227860122 -54333542 + AluY SINE Alu 1 298 -13 789 243 79 27 chr1 227860122 227860210 -54333454 + AluSx SINE Alu 230 312 0 598 304 110 36 chr1 227860272 227860608 -54333056 - L2 LINE L2 -572 2742 2382 322 305 206 0 chr1 227860739 227860870 -54332794 - MIR SINE MIR -8 254 97 8908 175 37 20 chr1 227860972 227863395 -54330269 + L1PB3 LINE L1 3332 5788 -366 298 248 33 0 chr1 227863396 227863517 -54330147 + (TA)n Simple_repeat Simple_repeat 2 126 0 1980 143 3 24 chr1 227863520 227863849 -54329815 + L1PB3 LINE L1 5777 6098 -56 314 164 27 14 chr1 227863849 227863912 -54329752 + L1MA8 LINE L1 6212 6285 -6 2787 197 99 27 chr1 227863924 227864600 -54329064 - L1MC4 LINE L1 -554 7488 6764 22 0 0 0 chr1 227865605 227865627 -54328037 + AT_rich Low_complexity Low_complexity 1 22 0 228 280 40 0 chr1 227866733 227866808 -54326856 + L2 LINE L2 2437 2514 -800 816 298 164 13 chr1 227866865 227867569 -54326095 - L2 LINE L2 -1 3312 2487 3033 205 100 3 chr1 227867569 227868326 -54325338 + Charlie1 DNA MER1_type 1563 2393 -368 656 207 59 15 chr1 227868327 227868462 -54325202 + Tigger3(Golem) DNA MER2_type 2 142 -2887 1516 168 0 0 chr1 227868469 227868707 -54324957 + Tigger3(Golem) DNA MER2_type 2801 3038 0 996 196 186 22 chr1 227868707 227869022 -54324642 + Charlie1 DNA MER1_type 2392 2758 -3 310 304 85 71 chr1 227869022 227869246 -54324418 - L2 LINE L2 -890 2424 2198 345 143 18 0 chr1 227869250 227869306 -54324358 + AluJ/FLAM SINE Alu 1 57 -245 295 349 92 43 chr1 227872890 227873194 -54320470 + L2 LINE L2 2932 3250 -22 189 0 0 0 chr1 227873194 227873215 -54320449 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2461 50 0 0 chr1 227873749 227874050 -54319614 + AluY SINE Alu 1 301 -10 35 41 0 0 chr1 227875838 227875887 -54317777 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr1 227876341 227876370 -54317294 + AT_rich Low_complexity Low_complexity 1 29 0 630 231 133 36 chr1 227878453 227878648 -54315016 + MIR SINE MIR 2 215 -47 338 333 88 26 chr1 227881190 227881418 -54312246 + L2 LINE L2 2829 3070 -202 41986 37 24 1 chr1 227881927 227887943 -54305721 - L1PA3 LINE L1 0 6155 1 399 356 101 38 chr1 227888084 227888589 -54305075 - L2 LINE L2 -731 2583 2047 440 301 20 14 chr1 227889116 227889262 -54304402 + L2 LINE L2 3162 3308 -5 210 37 0 0 chr1 227890354 227890381 -54303283 + (T)n Simple_repeat Simple_repeat 1 27 0 466 189 39 63 chr1 227890612 227890739 -54302925 - MIR3 SINE MIR -6 202 79 23 33 0 0 chr1 227894707 227894737 -54298927 + AT_rich Low_complexity Low_complexity 1 30 0 1522 103 40 9 chr1 227895051 227895274 -54298390 + MER30 DNA MER1_type 1 230 0 214 354 151 54 chr1 227896300 227896366 -54297298 + L2 LINE L2 2823 2881 -391 1959 5 0 0 chr1 227896366 227896576 -54297088 - AluYa5 SINE Alu -13 298 89 214 354 151 54 chr1 227896576 227896919 -54296745 + L2 LINE L2 2881 3272 0 193 331 88 7 chr1 227897390 227897526 -54296138 - L2 LINE L2 -50 3263 3117 327 300 113 18 chr1 227897785 227898185 -54295479 + L1ME LINE L1 4399 4836 -1310 184 279 66 33 chr1 227898366 227898427 -54295237 - L2 LINE L2 -2486 828 766 305 236 116 106 chr1 227898663 227898956 -54294708 + L1ME LINE L1 5490 5785 -336 1109 175 116 56 chr1 227899291 227899542 -54294122 + AluJo SINE Alu 3 268 -44 5146 214 82 42 chr1 227899611 227900791 -54292873 - L1MC4 LINE L1 -1 8041 6787 248 0 0 30 chr1 227900791 227900824 -54292840 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5146 214 82 42 chr1 227900824 227901145 -54292519 - L1MC4 LINE L1 -1255 6787 6480 2085 125 3 0 chr1 227901434 227901722 -54291942 + AluSx SINE Alu 1 289 -23 35 0 0 0 chr1 227902031 227902066 -54291598 + AT_rich Low_complexity Low_complexity 1 35 0 296 331 92 25 chr1 227902274 227902437 -54291227 + L2 LINE L2 2589 2762 -552 455 262 16 8 chr1 227902814 227902936 -54290728 - L2 LINE L2 0 3313 3191 35 0 0 0 chr1 227902948 227902983 -54290681 + AT_rich Low_complexity Low_complexity 1 35 0 2245 109 0 0 chr1 227903114 227903407 -54290257 + AluSx SINE Alu 3 295 -17 2952 160 31 53 chr1 227903472 227903719 -54289945 + MER21A LTR ERV1 11 262 -669 11280 33 2 0 chr1 227903719 227905840 -54287824 - L1PA4 LINE L1 -2 6153 4030 2952 160 31 53 chr1 227905840 227906455 -54287209 + MER21A LTR ERV1 262 814 -117 2138 228 175 14 chr1 227907179 227907956 -54285708 + L1M4 LINE L1 3759 4660 -1486 200 311 9 9 chr1 227907987 227908093 -54285571 + (TATAG)n Simple_repeat Simple_repeat 5 110 0 375 181 0 0 chr1 227908143 227908215 -54285449 + (TA)n Simple_repeat Simple_repeat 1 72 0 541 270 61 58 chr1 227908218 227908611 -54285053 + L1M4 LINE L1 4840 5233 -913 259 194 16 0 chr1 227909765 227909827 -54283837 - L1MA5 LINE L1 -1 6299 6237 21 0 0 0 chr1 227909828 227909849 -54283815 + AT_rich Low_complexity Low_complexity 1 21 0 492 191 99 33 chr1 227910466 227910618 -54283046 + MER103 DNA DNA 1 162 -4 180 0 0 0 chr1 227910623 227910643 -54283021 + (T)n Simple_repeat Simple_repeat 1 20 0 328 361 87 40 chr1 227910704 227911025 -54282639 + L2 LINE L2 2916 3251 -21 224 231 0 19 chr1 227912240 227912292 -54281372 + CT-rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr1 227912392 227912416 -54281248 + AT_rich Low_complexity Low_complexity 1 24 0 3493 251 196 30 chr1 227913293 227914889 -54278775 + L2 LINE L2 1209 3309 -4 583 288 42 74 chr1 227915037 227915374 -54278290 + L2 LINE L2 332 657 -2657 647 265 37 42 chr1 227915421 227915636 -54278028 - MIR SINE MIR -15 247 34 400 418 42 8 chr1 227915868 227916227 -54277437 + L2 LINE L2 2511 2881 -433 1762 180 32 6 chr1 227916638 227916977 -54276687 - MER7A DNA MER2_type 0 346 1 268 50 0 0 chr1 227917356 227917396 -54276268 + Alu SINE Alu 262 301 -1 * 702 306 43 40 chr1 227917395 227917566 -54276098 - MARNA DNA Mariner -197 389 220 2082 115 3 20 chr1 227917566 227917870 -54275794 - AluSg SINE Alu -11 299 1 702 306 43 40 chr1 227917870 227918048 -54275616 - MARNA DNA Mariner -366 220 39 18950 28 3 0 chr1 227918575 227920864 -54272800 - L1P LINE L1 -1254 4892 2596 302 193 0 128 chr1 227920971 227921080 -54272584 - L1MC4 LINE L1 -1339 6703 6609 392 286 8 0 chr1 227921081 227921214 -54272450 + (TA)n Simple_repeat Simple_repeat 2 135 0 542 162 81 37 chr1 227921227 227921363 -54272301 + L2 LINE L2 3172 3313 0 499 297 82 22 chr1 227922904 227923242 -54270422 - L1MB7 LINE L1 -295 5889 5512 210 71 0 0 chr1 227923889 227923917 -54269747 + (GAAA)n Simple_repeat Simple_repeat 4 31 0 207 322 165 8 chr1 227925001 227925122 -54268542 - L2 LINE L2 -4 3309 3170 482 305 122 27 chr1 227926262 227926557 -54267107 - L2 LINE L2 -32 3281 2959 2309 88 7 3 chr1 227926563 227926868 -54266796 + AluSc SINE Alu 1 306 -3 210 37 0 0 chr1 227928206 227928233 -54265431 + (CA)n Simple_repeat Simple_repeat 2 28 0 562 290 35 13 chr1 227929658 227929842 -54263822 + MIR SINE MIR 2 188 -73 715 195 51 55 chr1 227930207 227930443 -54263221 - MER106A DNA MER1_type -1 235 1 414 307 31 25 chr1 227930479 227930642 -54263022 + MIR SINE MIR 12 175 -87 302 229 0 0 chr1 227933221 227933282 -54260382 - MLT1J LTR MaLR -2 509 449 628 219 81 0 chr1 227933282 227933442 -54260222 + MIR SINE MIR 79 251 -11 183 80 0 0 chr1 227933454 227933479 -54260185 + (TTA)n Simple_repeat Simple_repeat 2 26 0 646 222 62 41 chr1 227933581 227933775 -54259889 - MLT1J LTR MaLR -269 242 45 2313 169 68 13 chr1 227933789 227934244 -54259420 - MER89 LTR ERV1 -2 557 78 221 306 0 19 chr1 227934267 227934375 -54259289 + (TA)n Simple_repeat Simple_repeat 2 107 0 197 179 0 51 chr1 227934877 227934916 -54258748 - MIR SINE MIR -12 250 214 * 209 340 0 0 chr1 227934908 227934958 -54258706 - L2 LINE L2 -89 3183 3134 325 330 85 23 chr1 227935035 227935211 -54258453 + MIR SINE MIR 15 201 -61 279 0 0 0 chr1 227935762 227935793 -54257871 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 259 239 131 39 chr1 227935794 227935924 -54257740 - L2 LINE L2 -107 3206 3065 2032 135 3 0 chr1 227935942 227936230 -54257434 - AluSx SINE Alu -23 289 1 609 339 163 10 chr1 227936308 227937040 -54256624 + L2 LINE L2 1806 2649 -665 348 306 9 0 chr1 227937203 227937311 -54256353 + L2 LINE L2 3193 3301 -12 330 324 72 92 chr1 227937358 227937704 -54255960 + L2 LINE L2 2934 3272 0 28 0 0 0 chr1 227938805 227938833 -54254831 + AT_rich Low_complexity Low_complexity 1 28 0 2156 184 106 70 chr1 227939246 227939877 -54253787 - MLT1E1 LTR MaLR 0 654 1 236 253 19 6 chr1 227940363 227940525 -54253139 + (TA)n Simple_repeat Simple_repeat 1 164 0 23 0 0 0 chr1 227941810 227941833 -54251831 + AT_rich Low_complexity Low_complexity 1 23 0 469 260 58 32 chr1 227942340 227942494 -54251170 - MIR3 SINE MIR -6 202 45 287 237 237 10 chr1 227942753 227942850 -54250814 - MER45 DNA AcHobo -834 119 1 26 82 0 0 chr1 227945406 227945467 -54248197 + AT_rich Low_complexity Low_complexity 1 61 0 22 35 0 0 chr1 227945883 227945912 -54247752 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr1 227947004 227947036 -54246628 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr1 227947825 227947849 -54245815 + AT_rich Low_complexity Low_complexity 1 24 0 262 163 51 0 chr1 227948593 227948691 -54244973 + (TA)n Simple_repeat Simple_repeat 1 103 0 212 382 31 27 chr1 227950107 227950332 -54243332 + L2 LINE L2 2686 2911 -403 631 267 155 40 chr1 227950658 227950980 -54242684 - L2 LINE L2 -4 3309 2951 181 305 176 19 chr1 227951118 227951328 -54242336 - L3 LINE CR1 -322 1255 1013 553 209 62 39 chr1 227951662 227951791 -54241873 + MER112 DNA MER1_type 129 260 0 205 282 40 40 chr1 227951957 227952081 -54241583 - MIR SINE MIR -41 221 98 774 237 0 107 chr1 227952885 227953176 -54240488 + L2 LINE L2 3053 3312 -1 705 260 40 99 chr1 227953219 227953623 -54240041 - MLT1I LTR MaLR 0 409 30 1397 217 106 18 chr1 227954439 227954913 -54238751 - MLT1E2 LTR MaLR 0 626 51 435 94 0 4 chr1 227955078 227955301 -54238363 + AluY SINE Alu 1 311 -1 363 252 92 34 chr1 227956425 227956544 -54237120 + MIR SINE MIR 43 168 -94 394 291 55 0 chr1 227956571 227956681 -54236983 + L2 LINE L2 3148 3263 -9 198 0 0 0 chr1 227957008 227957030 -54236634 + (TG)n Simple_repeat Simple_repeat 1 22 0 459 340 184 6 chr1 227957797 227958129 -54235535 + L2 LINE L2 2554 2944 -370 384 316 48 30 chr1 227958428 227958659 -54235005 - LTR16C LTR ERVL -19 472 238 390 42 0 0 chr1 227960519 227960567 -54233097 + (TG)n Simple_repeat Simple_repeat 1 48 0 26 0 0 0 chr1 227961635 227961661 -54232003 + AT_rich Low_complexity Low_complexity 1 26 0 856 207 36 54 chr1 227962006 227962228 -54231436 + MER20 DNA MER1_type 1 218 -1 864 103 8 0 chr1 227963047 227963173 -54230491 - L1PA13 LINE L1 -8 6155 6029 3480 112 2 4 chr1 227963173 227963680 -54229984 - L1PA13 LINE L1 -66 6097 5592 292 299 37 9 chr1 227964025 227964132 -54229532 + L2 LINE L2 3191 3300 -13 1868 183 100 24 chr1 227964137 227964579 -54229085 - MLT1D LTR MaLR -8 618 21 2234 123 100 5 chr1 227964858 227965247 -54228417 + MSTA LTR MaLR 1 426 -2 202 360 27 0 chr1 227965764 227965839 -54227825 - L2 LINE L2 -2 3311 3235 730 275 83 25 chr1 227966047 227966287 -54227377 - MIR SINE MIR 0 262 9 2324 175 42 69 chr1 227966645 227967212 -54226452 + MER74A LTR ERVL 7 558 0 194 313 83 111 chr1 227967505 227967649 -54226015 - L2 LINE L2 -214 3058 2919 2140 110 3 3 chr1 227969013 227969312 -54224352 + AluSx SINE Alu 2 300 -12 1987 122 0 64 chr1 227969340 227969700 -54223964 - MER1B DNA MER1_type 0 337 1 223 368 66 7 chr1 227969734 227969870 -54223794 - MIR SINE MIR -70 192 49 21 0 0 0 chr1 227970513 227970534 -54223130 + AT_rich Low_complexity Low_complexity 1 21 0 2019 117 4 0 chr1 227970541 227970822 -54222842 - AluSx SINE Alu -30 282 1 201 311 67 0 chr1 227970995 227971085 -54222579 - L3 LINE CR1 -310 1267 1172 26 30 0 0 chr1 227971984 227972017 -54221647 + AT_rich Low_complexity Low_complexity 1 33 0 221 328 134 0 chr1 227973665 227973784 -54219880 + MIR SINE MIR 20 154 -108 534 194 10 0 chr1 227974358 227974456 -54219208 + ERVL LTR ERVL 4925 5023 -741 524 176 20 10 chr1 227974803 227974905 -54218759 + MLT2B1 LTR ERVL 3 105 -415 324 349 51 28 chr1 227974975 227975190 -54218474 - L2 LINE L2 -428 2886 2667 31 68 0 0 chr1 227975693 227975752 -54217912 + AT_rich Low_complexity Low_complexity 1 59 0 918 215 94 35 chr1 227976397 227976845 -54216819 - MER69 DNA AcHobo -5 2521 2010 * 1379 301 62 0 chr1 227976843 227977247 -54216417 - MER69 DNA AcHobo -658 568 140 761 206 133 11 chr1 227977247 227977427 -54216237 - MLT1A2 LTR MaLR 0 374 173 204 216 0 0 chr1 227978449 227978486 -54215178 + (CA)n Simple_repeat Simple_repeat 2 38 0 2159 260 139 17 chr1 227980061 227980883 -54212781 - MER69B DNA AcHobo -1 1225 304 738 318 95 3 chr1 227980910 227981174 -54212490 + ERVL LTR ERVL 2776 3073 -2691 558 229 0 0 chr1 227981174 227981292 -54212372 + L1PB4 LINE L1 6026 6143 -13 738 318 95 3 chr1 227981292 227981332 -54212332 + ERVL LTR ERVL 3073 3108 -2656 1359 309 26 8 chr1 227981350 227981845 -54211819 + ERVL LTR ERVL 4879 5382 -382 1483 203 40 0 chr1 227981959 227982114 -54211550 - AluJo SINE Alu -25 287 115 195 42 0 0 chr1 227982114 227982138 -54211526 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1483 203 40 0 chr1 227982138 227982258 -54211406 - AluJo SINE Alu -197 115 1 2046 123 58 14 chr1 227982962 227983321 -54210343 + THE1C LTR MaLR 1 375 0 229 313 116 0 chr1 227983826 227983938 -54209726 + MIR SINE MIR 37 161 -101 420 202 8 85 chr1 227984054 227984183 -54209481 - MER103 DNA DNA -3 163 45 547 313 132 1 chr1 227984762 227984966 -54208698 + MIR SINE MIR 29 260 -2 2200 116 0 0 chr1 227985003 227985295 -54208369 + AluSg SINE Alu 1 292 -18 398 281 204 25 chr1 227986074 227986270 -54207394 + MIR SINE MIR 31 261 -1 195 129 0 0 chr1 227986673 227986704 -54206960 + (TG)n Simple_repeat Simple_repeat 1 31 0 285 327 145 19 chr1 227986811 227987025 -54206639 - MIR SINE MIR -14 248 8 225 193 12 36 chr1 227989225 227989308 -54204356 + CT-rich Low_complexity Low_complexity 3 83 0 189 402 76 31 chr1 227989469 227989760 -54203904 + L2 LINE L2 2364 2667 -647 268 153 34 51 chr1 227989771 227989830 -54203834 - L2 LINE L2 0 3272 3215 217 222 0 19 chr1 227989961 227990015 -54203649 + CT-rich Low_complexity Low_complexity 3 55 0 25 31 0 0 chr1 227990458 227990490 -54203174 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr1 227990563 227990586 -54203078 + (T)n Simple_repeat Simple_repeat 1 23 0 187 313 87 35 chr1 227991849 227992040 -54201624 + MIR3 SINE MIR 1 199 -9 1336 154 84 10 chr1 227992566 227992864 -54200800 - MER33 DNA MER1_type 0 324 5 409 57 0 0 chr1 227993113 227993166 -54200498 + MADE1 DNA Mariner 1 53 -27 302 265 145 43 chr1 227995023 227995140 -54198524 - MIR3 SINE MIR -13 195 67 28 0 0 0 chr1 227998146 227998174 -54195490 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 227998203 227998224 -54195440 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr1 228001409 228001443 -54192221 + (TTA)n Simple_repeat Simple_repeat 2 35 0 233 365 112 17 chr1 228103159 228103515 -54090149 + L2 LINE L2 2469 2858 -456 235 347 74 0 chr1 228103817 228103912 -54089752 - L2 LINE L2 -38 3234 3133 342 163 139 12 chr1 228104047 228104096 -54089568 - MLT2A1 LTR ERVL 0 453 412 279 0 0 0 chr1 228104096 228104127 -54089537 + (CA)n Simple_repeat Simple_repeat 2 32 0 342 163 139 12 chr1 228104127 228104163 -54089501 - MLT2A1 LTR ERVL -41 412 357 332 83 67 17 chr1 228104209 228104269 -54089395 - MLT2A1 LTR ERVL -31 413 351 193 189 0 45 chr1 228104299 228104410 -54089254 + (TA)n Simple_repeat Simple_repeat 1 106 0 2808 76 28 8 chr1 228104415 228104810 -54088854 - MLT2A1 LTR ERVL -41 403 1 218 321 24 24 chr1 228104813 228104897 -54088767 - L2 LINE L2 -258 3014 2931 22 0 0 0 chr1 228104901 228104923 -54088741 + AT_rich Low_complexity Low_complexity 1 22 0 190 359 0 0 chr1 228105794 228105847 -54087817 - MIR SINE MIR -207 55 3 1438 312 170 7 chr1 228106516 228107273 -54086391 + L2 LINE L2 1123 2003 -1311 543 225 135 72 chr1 228107285 228107507 -54086157 - MLT1H LTR MaLR 0 549 314 344 234 35 88 chr1 228108255 228108426 -54085238 - MIR3 SINE MIR -31 177 16 2215 139 0 20 chr1 228109137 228109481 -54084183 + MER1B DNA MER1_type 1 337 0 323 381 81 0 chr1 228109738 228109898 -54083766 + MIR SINE MIR 2 174 -88 448 200 27 9 chr1 228110199 228110309 -54083355 + LTR37A LTR ERV1 315 426 0 2085 130 0 0 chr1 228111412 228111711 -54081953 - AluSg SINE Alu -11 299 1 1325 145 106 56 chr1 228112800 228113103 -54080561 - MER33 DNA MER1_type -6 318 1 367 268 80 27 chr1 228113552 228113664 -54080000 + L2 LINE L2 3194 3311 -2 1112 317 102 8 chr1 228114939 228115428 -54078236 - L2 LINE L2 0 3313 2776 293 102 17 0 chr1 228116484 228116543 -54077121 + (TA)n Simple_repeat Simple_repeat 2 61 0 24 53 0 0 chr1 228116680 228116718 -54076946 + AT_rich Low_complexity Low_complexity 1 38 0 252 312 184 8 chr1 228119062 228119187 -54074477 + MIR SINE MIR 79 225 -37 24 0 0 0 chr1 228119187 228119211 -54074453 + AT_rich Low_complexity Low_complexity 1 24 0 418 344 99 31 chr1 228119347 228119699 -54073965 - L2 LINE L2 -994 2320 1945 1928 267 175 52 chr1 228119702 228120312 -54073352 - L2 LINE L2 -4 3309 2776 2193 115 3 0 chr1 228120312 228120607 -54073057 + AluSc SINE Alu 1 296 -13 1928 267 175 52 chr1 228120607 228121372 -54072292 - L2 LINE L2 -537 2776 1723 1909 207 32 37 chr1 228121386 228121849 -54071815 + MLT1C LTR MaLR 7 467 0 183 100 0 0 chr1 228122079 228122109 -54071555 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 954 250 22 13 chr1 228122920 228123148 -54070516 - MIR SINE MIR -2 260 31 21 0 0 0 chr1 228124109 228124130 -54069534 + AT_rich Low_complexity Low_complexity 1 21 0 230 185 37 19 chr1 228124669 228124723 -54068941 + CT-rich Low_complexity Low_complexity 2 56 0 214 303 184 18 chr1 228125025 228125134 -54068530 + L2 LINE L2 3146 3272 0 1607 168 44 0 chr1 228125911 228126209 -54067455 + AluJb SINE Alu 1 311 -1 411 308 38 15 chr1 228126866 228126999 -54066665 + MIR SINE MIR 4 139 -123 219 161 16 65 chr1 228127213 228127226 -54066438 + A-rich Low_complexity Low_complexity 4 16 -46 726 172 0 8 chr1 228127226 228127354 -54066310 + FLAM_A SINE Alu 1 127 -6 219 161 16 65 chr1 228127354 228127402 -54066262 + A-rich Low_complexity Low_complexity 16 62 0 299 306 12 0 chr1 228127452 228127537 -54066127 - MIR SINE MIR -107 155 70 189 387 40 16 chr1 228127673 228127797 -54065867 - MIR SINE MIR -113 149 23 418 270 104 54 chr1 228129332 228129554 -54064110 + L1MEd LINE L1 524 756 -5616 222 118 20 39 chr1 228130638 228130689 -54062975 + (TTA)n Simple_repeat Simple_repeat 2 51 0 199 261 193 11 chr1 228131849 228131937 -54061727 + L2 LINE L2 3201 3304 -9 800 212 24 0 chr1 228132501 228132666 -54060998 - AluSx SINE Alu -143 169 1 250 124 22 42 chr1 228132668 228132713 -54060951 - L1P5 LINE L1 -306 5825 5771 356 88 18 0 chr1 228132713 228132770 -54060894 + (CA)n Simple_repeat Simple_repeat 2 59 0 250 124 22 42 chr1 228132770 228132799 -54060865 - L1P5 LINE L1 -360 5771 5743 278 244 148 0 chr1 228132815 228132930 -54060734 - L1ME LINE L1 -462 5659 5528 4230 8 0 0 chr1 228133360 228133836 -54059828 - L1PA2 LINE L1 0 6155 5680 2304 293 132 8 chr1 228133853 228134800 -54058864 + L2 LINE L2 1995 3063 -250 203 284 35 71 chr1 228134820 228134961 -54058703 + MIR SINE MIR 127 262 0 1773 239 75 19 chr1 228135361 228136257 -54057407 + L1MEd LINE L1 2026 2977 -3405 289 344 70 25 chr1 228136430 228136671 -54056993 + MIR SINE MIR 9 260 -2 2149 96 3 10 chr1 228137876 228138177 -54055487 + AluSc SINE Alu 1 299 -10 973 237 28 19 chr1 228138643 228138964 -54054700 + MER33 DNA MER1_type 1 324 0 354 274 206 0 chr1 228138969 228139115 -54054549 + MIR SINE MIR 57 232 -30 22 0 0 0 chr1 228139421 228139443 -54054221 + AT_rich Low_complexity Low_complexity 1 22 0 333 227 64 64 chr1 228140435 228140545 -54053119 + L2 LINE L2 3201 3310 -3 308 320 54 41 chr1 228140696 228140843 -54052821 + MIR SINE MIR 92 240 -22 276 278 111 0 chr1 228140850 228140922 -54052742 - L2 LINE L2 0 3313 3234 183 80 0 0 chr1 228142075 228142100 -54051564 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 700 128 8 8 chr1 228142173 228142298 -54051366 + (TTCC)n Simple_repeat Simple_repeat 1 125 0 2164 109 7 0 chr1 228142298 228142592 -54051072 - AluSq SINE Alu -17 296 1 414 300 54 50 chr1 228142895 228143126 -54050538 - MIR SINE MIR -34 228 1 300 198 0 125 chr1 228143128 228143224 -54050440 - L1MC4 LINE L1 -1346 6696 6613 353 170 47 10 chr1 228143227 228143430 -54050234 + (TA)n Simple_repeat Simple_repeat 1 210 0 556 225 28 7 chr1 228144650 228144792 -54048872 - L1ME4a LINE L1 -2 6119 5975 271 317 193 15 chr1 228144912 228145171 -54048493 + L2 LINE L2 902 1206 -2108 * 273 263 53 129 chr1 228145157 228145328 -54048336 + L2 LINE L2 2875 3032 -281 211 302 19 0 chr1 228145441 228145494 -54048170 + L2 LINE L2 3214 3267 -5 324 242 10 0 chr1 228145623 228145728 -54047936 + L1MC4 LINE L1 2006 6983 -1339 259 211 0 0 chr1 228145738 228145790 -54047874 + MER4-int LTR ERV1 1111 1162 -5436 26 0 0 0 chr1 228147004 228147030 -54046634 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr1 228147841 228147867 -54045797 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 244 324 0 0 chr1 228149028 228149102 -54044562 - L1M4 LINE L1 -2052 4094 4021 1997 137 0 0 chr1 228149158 228149436 -54044228 + AluSx SINE Alu 1 278 -34 531 192 62 15 chr1 228149473 228149603 -54044061 - L1M4 LINE L1 -2206 3940 3805 674 254 74 55 chr1 228149604 228149988 -54043676 - L1M4 LINE L1 -2828 3318 2920 1619 171 0 58 chr1 228149988 228150297 -54043367 - AluJo SINE Alu -15 297 7 674 254 74 55 chr1 228150297 228150439 -54043225 - L1M4 LINE L1 -3226 2920 2782 502 267 174 0 chr1 228150918 228151079 -54042585 - MIR SINE MIR -71 191 3 479 214 13 19 chr1 228151508 228151662 -54042002 + CT-rich Low_complexity Low_complexity 4 156 0 228 182 0 0 chr1 228152777 228152821 -54040843 - L1PA15 LINE L1 -6 6159 6116 * 8012 141 14 18 chr1 228152813 228153510 -54040154 - L1PA13 LINE L1 -85 6078 5380 2135 113 10 0 chr1 228153510 228153801 -54039863 - AluSq SINE Alu -19 294 1 8012 141 14 18 chr1 228153801 228154996 -54038668 - L1PA13 LINE L1 -783 5380 4187 1782 133 215 6 chr1 228154996 228155350 -54038314 - MSTA LTR MaLR 0 428 1 8012 141 14 18 chr1 228155350 228155665 -54037999 - L1PA13 LINE L1 -1976 4187 3872 2022 116 3 39 chr1 228155685 228155995 -54037669 + AluSx SINE Alu 1 299 -13 237 33 0 0 chr1 228155998 228156028 -54037636 - L1PA13 LINE L1 -2346 3800 3771 658 254 104 54 chr1 228156696 228157329 -54036335 - Charlie7 DNA MER1_type -35 2577 1913 293 283 112 13 chr1 228157480 228157632 -54036032 - Charlie7 DNA MER1_type -2445 167 1 215 359 22 0 chr1 228157710 228157802 -54035862 - L3 LINE CR1 -177 1400 1307 214 385 0 0 chr1 228157827 228157892 -54035772 - L3 LINE CR1 -11 1566 1502 367 200 63 0 chr1 228157893 228157988 -54035676 + MER53 DNA DNA 1 101 -88 2128 107 7 39 chr1 228158294 228158602 -54035062 - AluSx SINE Alu -14 298 1 834 207 5 58 chr1 228159190 228159378 -54034286 + MER45A DNA AcHobo 1 178 0 195 408 31 21 chr1 228159562 228159753 -54033911 + L2 LINE L2 2493 2685 -629 461 252 84 8 chr1 228159781 228159900 -54033764 + MER58A DNA MER1_type 49 176 -48 364 179 77 13 chr1 228159912 228159990 -54033674 + MER58B DNA MER1_type 258 340 -1 22 0 0 0 chr1 228160028 228160050 -54033614 + AT_rich Low_complexity Low_complexity 1 22 0 1601 198 68 20 chr1 228160303 228160656 -54033008 - MLT1A2 LTR MaLR 0 374 5 486 337 118 42 chr1 228160810 228161142 -54032522 + L2 LINE L2 2914 3270 -2 291 346 236 0 chr1 228161742 228161950 -54031714 - MIR SINE MIR -1 261 5 23 33 0 0 chr1 228162612 228162642 -54031022 + AT_rich Low_complexity Low_complexity 1 30 0 416 368 110 12 chr1 228162949 228163601 -54030063 + L2 LINE L2 1520 2235 -1079 184 103 569 0 chr1 228163693 228163751 -54029913 - MIR SINE MIR -10 252 162 4986 241 52 33 chr1 228163988 228164408 -54029256 - L1ME1 LINE L1 -4 6162 5751 201 39 0 0 chr1 228164408 228164434 -54029230 + (TA)n Simple_repeat Simple_repeat 1 26 0 2000 34 0 0 chr1 228164434 228164669 -54028995 - L1PA5 LINE L1 -16 6138 5904 4986 241 52 33 chr1 228164669 228165645 -54028019 - L1ME1 LINE L1 -415 5751 4795 2279 65 10 46 chr1 228165645 228165952 -54027712 - AluY SINE Alu -15 296 1 4986 241 52 33 chr1 228165952 228167170 -54026494 - L1ME1 LINE L1 -1371 4795 3495 231 164 0 0 chr1 228167175 228167230 -54026434 - L1MB4 LINE L1 0 6180 6126 338 163 12 58 chr1 228167233 228167319 -54026345 - L1MC2 LINE L1 -1 6343 6262 400 149 0 0 chr1 228167325 228167392 -54026272 - L1MC1 LINE L1 -138 6195 6129 2391 95 0 0 chr1 228167404 228167709 -54025955 - AluSx SINE Alu -7 305 1 4351 158 42 28 chr1 228167709 228167968 -54025696 - L1PBa LINE L1 -3752 3110 2856 2234 85 3 10 chr1 228167968 228168261 -54025403 - AluY SINE Alu -20 291 1 4351 158 42 28 chr1 228168261 228168981 -54024683 - L1PBa LINE L1 -4006 2856 2108 * 5956 120 163 25 chr1 228168964 228169561 -54024103 - L1PBa LINE L1 -4998 1865 1352 2411 75 20 0 chr1 228169561 228169866 -54023798 + AluY SINE Alu 1 311 0 5956 120 163 25 chr1 228169866 228170350 -54023314 - L1PBa LINE L1 -5511 1352 635 1039 178 5 0 chr1 228170351 228170548 -54023116 - L1PBa LINE L1 -6663 200 3 680 186 0 0 chr1 228170548 228170666 -54022998 - L1MC1 LINE L1 -189 6144 6027 * 1171 153 68 0 chr1 228170651 228170873 -54022791 - L1MB3 LINE L1 -44 6139 5903 367 73 29 0 chr1 228170873 228170941 -54022723 + (TTTA)n Simple_repeat Simple_repeat 3 72 0 5384 102 45 23 chr1 228170941 228171778 -54021886 - SVA Other Other -23 1363 508 1128 184 61 0 chr1 228171781 228172009 -54021655 - L1MB3 LINE L1 -455 5716 5475 10291 215 24 28 chr1 228172029 228173891 -54019773 - L1PA13 LINE L1 -42 6119 4251 1447 201 0 43 chr1 228173891 228174194 -54019470 + AluJo SINE Alu 2 291 -21 10291 215 24 28 chr1 228174194 228176365 -54017299 - L1PA13 LINE L1 -1910 4251 2138 1578 177 14 16 chr1 228176365 228176757 -54016907 - MER7A DNA MER2_type 0 346 1 10943 174 59 27 chr1 228176757 228178328 -54015336 - L1M4c LINE L1 -4009 2375 855 417 39 0 0 chr1 228178328 228178379 -54015285 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 10943 174 59 27 chr1 228178379 228178900 -54014764 - L1M4c LINE L1 -5529 855 202 2276 87 0 0 chr1 228178900 228179186 -54014478 + AluY SINE Alu 1 286 -25 10943 174 59 27 chr1 228179186 228179380 -54014284 - L1M4c LINE L1 -6182 202 16 2830 249 62 38 chr1 228179357 228181148 -54012516 - L1MEc LINE L1 -2613 3769 1818 * 1485 236 3 0 chr1 228181151 228181447 -54012217 - AluJo SINE Alu -14 298 2 261 0 0 0 chr1 228181447 228181476 -54012188 + (A)n Simple_repeat Simple_repeat 1 29 0 604 269 0 0 chr1 228181504 228181634 -54012030 - FLAM_A SINE Alu -3 130 1 3342 260 89 36 chr1 228181634 228183098 -54010566 - L1MEc LINE L1 -4756 1640 100 1754 292 192 21 chr1 228183098 228184160 -54009504 - L2 LINE L2 -172 3141 1894 1425 165 138 4 chr1 228185361 228185622 -54008042 + AluSx SINE Alu 1 296 -16 709 243 101 36 chr1 228185972 228186248 -54007416 - MLT1I LTR MaLR -7 402 109 200 255 21 0 chr1 228186844 228186891 -54006773 - L2 LINE L2 -16 3256 3209 712 192 16 0 chr1 228186896 228187021 -54006643 - MER44D DNA MER2_type 0 605 607 963 195 6 0 chr1 228187021 228187185 -54006479 - AluJb SINE Alu -19 293 129 3726 145 8 12 chr1 228187187 228187786 -54005878 + MSTA-int LTR MaLR 984 1580 0 1534 187 157 14 chr1 228187786 228188155 -54005509 + MSTA LTR MaLR 1 422 -6 4918 126 123 43 chr1 228188158 228189079 -54004585 - MSTA-int LTR MaLR -584 996 3 1885 161 130 18 chr1 228189081 228189466 -54004198 - MSTA LTR MaLR 0 428 1 228 256 0 0 chr1 228189922 228189965 -54003699 - LTR67 LTR ERVL -418 139 97 294 347 18 87 chr1 228190275 228190552 -54003112 + L2 LINE L2 2462 2719 -595 244 292 115 0 chr1 228190587 228190683 -54002981 + L2 LINE L2 2702 2808 -506 244 273 0 0 chr1 228190768 228190823 -54002841 + (TG)n Simple_repeat Simple_repeat 2 56 0 33 0 0 0 chr1 228192240 228192273 -54001391 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr1 228192309 228192335 -54001329 + AT_rich Low_complexity Low_complexity 1 26 0 1158 136 10 39 chr1 228192843 228193049 -54000615 + MER20 DNA MER1_type 1 200 -19 832 229 13 48 chr1 228194137 228194364 -53999300 + MER20 DNA MER1_type 1 219 0 22 94 0 0 chr1 228194894 228194958 -53998706 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr1 228195535 228195556 -53998108 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 228196354 228196385 -53997279 + AT_rich Low_complexity Low_complexity 1 31 0 252 197 0 53 chr1 228196447 228196523 -53997141 + A-rich Low_complexity Low_complexity 6 77 0 454 252 150 0 chr1 228198086 228198213 -53995451 - MER69 DNA AcHobo -2380 146 1 2519 213 97 18 chr1 228198539 228199192 -53994472 - MER67C LTR ERV1 0 710 7 1769 50 0 0 chr1 228199342 228199563 -53994101 - L1PA2 LINE L1 0 6155 5935 366 345 73 28 chr1 228200203 228200380 -53993284 - MIR3 SINE MIR -19 189 5 303 130 0 0 chr1 228200414 228200468 -53993196 + (T)n Simple_repeat Simple_repeat 1 54 0 1996 159 3 0 chr1 228200634 228200943 -53992721 - AluSq SINE Alu -3 310 1 455 328 38 12 chr1 228201016 228201434 -53992230 + L1ME3A LINE L1 3030 3458 -2688 678 201 110 6 chr1 228201531 228201695 -53991969 + MER39 LTR ERV1 3 183 -524 * 1212 197 63 27 chr1 228201693 228201992 -53991672 + MER39 LTR ERV1 300 609 -98 2258 128 0 0 chr1 228202138 228202450 -53991214 - AluSx SINE Alu 0 312 1 852 239 86 99 chr1 228202497 228203108 -53990556 + L1ME3A LINE L1 3723 4326 -1820 1929 165 7 0 chr1 228203108 228203448 -53990216 - AluSq SINE Alu 0 313 1 852 239 86 99 chr1 228203448 228203525 -53990139 + L1ME3A LINE L1 4326 4402 -1744 659 189 16 0 chr1 228203536 228203663 -53990001 + AluSg/x SINE Alu 178 306 -3 2551 247 37 75 chr1 228203663 228205289 -53988375 + L1ME3A LINE L1 4397 5944 -226 1617 131 0 20 chr1 228205289 228205570 -53988094 + AluSx SINE Alu 42 317 0 2551 247 37 75 chr1 228205570 228205777 -53987887 + L1ME3A LINE L1 5944 6157 -13 374 306 51 13 chr1 228205815 228205972 -53987692 - Charlie8 DNA MER1_type -2171 246 84 302 348 7 71 chr1 228207451 228207606 -53986058 - MIR3 SINE MIR -34 174 30 218 156 22 0 chr1 228209264 228209309 -53984355 + GA-rich Low_complexity Low_complexity 2 47 0 22 0 0 0 chr1 228209749 228209771 -53983893 + AT_rich Low_complexity Low_complexity 1 22 0 225 344 62 66 chr1 228210015 228210288 -53983376 + L2 LINE L2 3001 3272 0 464 293 140 65 chr1 228210344 228210586 -53983078 - MLT1K LTR MaLR -29 559 337 387 60 0 0 chr1 228210586 228210636 -53983028 + (CA)n Simple_repeat Simple_repeat 2 51 0 464 293 140 65 chr1 228210636 228210899 -53982765 - MLT1K LTR MaLR -251 337 16 21 57 0 0 chr1 228211121 228211156 -53982508 + AT_rich Low_complexity Low_complexity 1 35 0 517 254 81 51 chr1 228211236 228211433 -53982231 - MLT1G LTR MaLR 0 590 388 961 247 82 10 chr1 228211472 228211764 -53981900 + MER58B DNA MER1_type 28 340 -1 490 239 22 45 chr1 228211769 228211903 -53981761 - MLT1G LTR MaLR -298 292 162 514 175 193 0 chr1 228211904 228212018 -53981646 - L1MA6 LINE L1 -5 6295 6160 287 289 110 23 chr1 228213153 228213326 -53980338 - MIR SINE MIR -8 254 67 812 319 75 58 chr1 228213451 228214521 -53979143 - L2 LINE L2 -12 3301 2154 476 300 42 16 chr1 228214767 228214957 -53978707 + MIR SINE MIR 47 241 -21 633 250 87 66 chr1 228215621 228216077 -53977587 + MLT1J2 LTR MaLR 3 440 -10 219 408 0 40 chr1 228216572 228216724 -53976940 - L2 LINE L2 -181 3091 2946 251 340 96 43 chr1 228216784 228217158 -53976506 - L2 LINE L2 -427 2887 2494 1993 132 0 16 chr1 228217561 228217864 -53975800 - AluSx SINE Alu -14 298 1 234 0 0 0 chr1 228218017 228218043 -53975621 + (TG)n Simple_repeat Simple_repeat 1 26 0 214 171 0 0 chr1 228218788 228218829 -53974835 + (CAGAGA)n Simple_repeat Simple_repeat 1 41 0 371 209 0 55 chr1 228219170 228219261 -53974403 + HsTC2 DNA Tc2 1 86 -1812 2022 158 3 0 chr1 228220120 228220431 -53973233 - AluSx SINE Alu 0 312 1 1992 171 3 12 chr1 228220827 228221166 -53972498 - MER1B DNA MER1_type 0 337 2 494 344 127 37 chr1 228221284 228222133 -53971531 - L2 LINE L2 -244 3069 2298 1897 145 24 7 chr1 228222133 228222430 -53971234 + AluJb SINE Alu 3 304 -8 1964 106 14 10 chr1 228222435 228222727 -53970937 + AluSx SINE Alu 3 295 -17 494 344 127 37 chr1 228222727 228222946 -53970718 - L2 LINE L2 -1018 2295 1894 280 324 139 44 chr1 228222962 228223462 -53970202 + L2 LINE L2 2731 3259 -13 219 114 0 0 chr1 228223462 228223497 -53970167 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 578 277 78 7 chr1 228224901 228225132 -53968532 + MIR SINE MIR 3 249 -13 27 0 0 0 chr1 228226651 228226678 -53966986 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr1 228227518 228227540 -53966124 + AT_rich Low_complexity Low_complexity 1 22 0 185 294 0 0 chr1 228229199 228229250 -53964414 + L2 LINE L2 3259 3309 -4 366 23 0 0 chr1 228229655 228229698 -53963966 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 257 330 0 60 chr1 228229915 228230015 -53963649 + L2 LINE L2 2545 2638 -676 776 40 10 0 chr1 228230180 228230280 -53963384 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 207 0 0 0 chr1 228230834 228230857 -53962807 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 220 200 33 50 chr1 228232783 228232843 -53960821 + MIR SINE MIR 85 143 -65 25 0 0 0 chr1 228235280 228235305 -53958359 + AT_rich Low_complexity Low_complexity 1 25 0 299 316 50 50 chr1 228236838 228236977 -53956687 + MIR SINE MIR 13 151 -111 1055 313 132 40 chr1 228237003 228238166 -53955498 - L2 LINE L2 0 3313 2040 279 0 0 0 chr1 228238589 228238620 -53955044 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 241 0 0 chr1 228238902 228238960 -53954704 - MIR SINE MIR -21 241 184 210 263 35 0 chr1 228239569 228239626 -53954038 + GA-rich Low_complexity Low_complexity 2 60 0 431 321 29 0 chr1 228242615 228242752 -53950912 - MIR3 SINE MIR -17 191 51 646 218 85 37 chr1 228242955 228243143 -53950521 - MER20 DNA MER1_type -4 215 19 186 71 0 0 chr1 228243936 228243964 -53949700 + (T)n Simple_repeat Simple_repeat 1 28 0 182 88 0 29 chr1 228244327 228244361 -53949303 + (TA)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 228244807 228244828 -53948836 + AT_rich Low_complexity Low_complexity 1 21 0 212 189 0 57 chr1 228245477 228245530 -53948134 + L2 LINE L2 3262 3311 -2 1789 128 64 27 chr1 228246842 228247138 -53946526 - AluSp SINE Alu -6 307 1 312 195 11 69 chr1 228247248 228247335 -53946329 - L1MC4 LINE L1 -1347 6695 6614 391 315 18 0 chr1 228247338 228247503 -53946161 - L1ME LINE L1 -430 5691 5524 284 0 28 0 chr1 228247775 228247811 -53945853 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 250 21 0 chr1 228248250 228248298 -53945366 - L3 LINE CR1 -1 1576 1528 1427 205 40 97 chr1 228248450 228249005 -53944659 - Charlie1b DNA MER1_type 0 523 1 366 355 33 45 chr1 228249038 228249283 -53944381 - L3 LINE CR1 -271 1306 1065 657 360 22 0 chr1 228249490 228249715 -53943949 - MIR SINE MIR -4 258 29 357 43 0 0 chr1 228249741 228249788 -53943876 + (TG)n Simple_repeat Simple_repeat 2 48 0 620 276 49 22 chr1 228250920 228251105 -53942559 + MIR SINE MIR 2 191 -71 197 95 0 48 chr1 228251139 228251181 -53942483 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1531 53 4 66 chr1 228252377 228252603 -53941061 - AluY SINE Alu -2 309 98 33 43 0 0 chr1 228252636 228252683 -53940981 + AT_rich Low_complexity Low_complexity 1 47 0 1632 141 30 30 chr1 228253289 228253558 -53940106 + AluJb SINE Alu 34 302 -10 203 305 0 0 chr1 228253863 228253922 -53939742 + L3b LINE CR1 1234 1292 -291 21 0 0 0 chr1 228254037 228254058 -53939606 + AT_rich Low_complexity Low_complexity 1 21 0 257 241 166 69 chr1 228254396 228254541 -53939123 - MLT1L LTR MaLR -259 356 198 243 279 76 38 chr1 228254903 228254982 -53938682 - L2 LINE L2 -22 3250 3169 249 237 103 31 chr1 228255373 228255470 -53938194 - L2 LINE L2 -251 3062 2959 643 187 81 0 chr1 228255509 228255632 -53938032 - FLAM_A SINE Alu 0 133 1 276 304 0 0 chr1 228256279 228256358 -53937306 + MER116 DNA Mariner 2 80 0 21 71 0 0 chr1 228256765 228256807 -53936857 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 228257758 228257779 -53935885 + AT_rich Low_complexity Low_complexity 1 21 0 320 123 37 86 chr1 228257998 228258079 -53935585 - L1MA8 LINE L1 -112 6179 6103 885 194 99 26 chr1 228258080 228258312 -53935352 - MER2 DNA MER2_type -1 344 96 452 141 35 0 chr1 228258312 228258397 -53935267 + L1MA7 LINE L1 6202 6289 -2 561 352 84 52 chr1 228258422 228259218 -53934446 + L2 LINE L2 1782 2603 -711 363 263 176 35 chr1 228259430 228259757 -53933907 + MLT1L LTR MaLR 208 610 -5 1742 135 19 57 chr1 228259760 228260078 -53933586 - AluSx SINE Alu -5 307 2 191 370 89 38 chr1 228260298 228260533 -53933131 + L2 LINE L2 2845 3091 -181 453 280 43 99 chr1 228260604 228260815 -53932849 + MIR SINE MIR 43 241 -21 180 135 56 34 chr1 228261793 228261882 -53931782 + (TATAA)n Simple_repeat Simple_repeat 2 92 0 1445 217 22 3 chr1 228262028 228262341 -53931323 - L1MD3 LINE L1 -5 7990 7672 361 343 66 22 chr1 228265019 228265200 -53928464 - MIR SINE MIR -34 228 40 1995 66 6 117 chr1 228266531 228266865 -53926799 - AluSc SINE Alu -12 297 1 1780 108 12 0 chr1 228267507 228267765 -53925899 + AluSx SINE Alu 39 299 -13 181 330 102 45 chr1 228267865 228268041 -53925623 - L2 LINE L2 -564 2750 2565 340 330 63 47 chr1 228268150 228268341 -53925323 + MIR SINE MIR 8 201 -61 24 67 0 0 chr1 228268501 228268546 -53925118 + AT_rich Low_complexity Low_complexity 1 45 0 451 311 70 49 chr1 228270305 228270549 -53923115 + MIR SINE MIR 1 249 -13 331 267 14 62 chr1 228270876 228271022 -53922642 + MER5B DNA MER1_type 1 139 -39 234 294 24 12 chr1 228271259 228271344 -53922320 + MER103 DNA DNA 80 165 -1 23 33 0 0 chr1 228271706 228271736 -53921928 + AT_rich Low_complexity Low_complexity 1 30 0 456 284 78 40 chr1 228272002 228272298 -53921366 - HAL1 LINE L1 -1446 1061 755 230 289 72 0 chr1 228272319 228272402 -53921262 + MIR3 SINE MIR 98 186 -22 386 302 33 66 chr1 228272543 228272755 -53920909 + MIR SINE MIR 58 262 0 237 33 0 0 chr1 228274292 228274322 -53919342 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1257 171 97 19 chr1 228274325 228274583 -53919081 - AluJo SINE Alu -34 278 1 31 44 0 0 chr1 228275134 228275179 -53918485 + AT_rich Low_complexity Low_complexity 1 45 0 272 48 24 0 chr1 228275367 228275409 -53918255 + (TG)n Simple_repeat Simple_repeat 1 43 0 449 275 223 28 chr1 228276135 228276346 -53917318 + MIR SINE MIR 9 260 -2 21 57 0 0 chr1 228276351 228276386 -53917278 + AT_rich Low_complexity Low_complexity 1 35 0 293 338 186 31 chr1 228278172 228278880 -53914784 + L2 LINE L2 1858 2675 -639 544 276 49 25 chr1 228279112 228279315 -53914349 + L2 LINE L2 3106 3313 0 26 30 0 0 chr1 228279676 228279709 -53913955 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 228280137 228280158 -53913506 + AT_rich Low_complexity Low_complexity 1 21 0 1786 176 36 70 chr1 228281208 228281765 -53911899 - MLT2A2 LTR ERVL 0 554 3 213 154 0 0 chr1 228282007 228282046 -53911618 + CT-rich Low_complexity Low_complexity 1 39 0 255 281 31 0 chr1 228282047 228282111 -53911553 + polypyrimidine Low_complexity Low_complexity 4 69 0 31 88 0 0 chr1 228282663 228282743 -53910921 + AT_rich Low_complexity Low_complexity 1 80 0 23 0 0 0 chr1 228283145 228283168 -53910496 + AT_rich Low_complexity Low_complexity 1 23 0 2306 87 0 0 chr1 228283177 228283466 -53910198 + AluSc SINE Alu 1 289 -20 201 163 0 0 chr1 228283466 228283515 -53910149 + (TA)n Simple_repeat Simple_repeat 2 50 0 205 278 0 17 chr1 228283790 228283905 -53909759 + (TA)n Simple_repeat Simple_repeat 2 114 0 26 30 0 0 chr1 228285906 228285939 -53907725 + AT_rich Low_complexity Low_complexity 1 33 0 202 212 18 26 chr1 228285981 228286094 -53907570 + (TA)n Simple_repeat Simple_repeat 1 112 0 286 271 115 7 chr1 228286278 228286504 -53907160 - L1ME LINE L1 -655 5511 5265 212 274 98 49 chr1 228288745 228288847 -53904817 + L2 LINE L2 3200 3306 -7 23 33 0 0 chr1 228290007 228290037 -53903627 + AT_rich Low_complexity Low_complexity 1 30 0 304 257 38 19 chr1 228290084 228290189 -53903475 + MIR SINE MIR 48 154 -108 1074 195 0 9 chr1 228291954 228292169 -53901495 + L1PA16 LINE L1 5946 6158 -8 1987 137 30 0 chr1 228292719 228293018 -53900646 - AluSx SINE Alu -4 308 1 226 335 48 96 chr1 228293020 228293417 -53900247 + L2 LINE L2 2890 3267 -5 289 361 23 15 chr1 228293673 228293806 -53899858 - L2 LINE L2 -3 3269 3136 24 53 0 0 chr1 228294251 228294289 -53899375 + AT_rich Low_complexity Low_complexity 1 38 0 201 226 16 16 chr1 228295058 228295120 -53898544 + A-rich Low_complexity Low_complexity 4 65 0 242 268 12 24 chr1 228295625 228295707 -53897957 + CT-rich Low_complexity Low_complexity 2 82 0 1482 175 38 52 chr1 228296438 228296804 -53896860 + MER46B DNA MER2_type 1 236 0 3386 209 55 13 chr1 228297200 228298103 -53895561 - L1ME LINE L1 -937 5209 4269 1849 92 111 4 chr1 228298150 228298421 -53895243 - AluSg SINE Alu -10 300 1 1333 246 121 32 chr1 228298612 228299807 -53893857 + L1ME2 LINE L1 4794 6159 -5 1936 47 0 31 chr1 228302419 228302693 -53890971 - AluY SINE Alu 0 300 35 605 204 29 7 chr1 228302954 228303091 -53890573 + MIR SINE MIR 93 232 -30 226 303 0 37 chr1 228305094 228305203 -53888461 + L2 LINE L2 2135 2239 -1075 444 289 131 31 chr1 228306152 228306540 -53887124 - L1ME4a LINE L1 -218 5903 5477 2123 103 0 0 chr1 228306866 228307203 -53886461 - AluSx SINE Alu 0 337 1 2192 101 7 0 chr1 228307624 228307921 -53885743 - AluSx SINE Alu -13 299 1 211 333 40 47 chr1 228308146 228308296 -53885368 + L2 LINE L2 2835 2983 -289 32 75 0 0 chr1 228309078 228309145 -53884519 + AT_rich Low_complexity Low_complexity 1 67 0 39 38 0 0 chr1 228309440 228309493 -53884171 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr1 228309635 228309663 -53884001 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 228309786 228309818 -53883846 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr1 228310405 228310426 -53883238 + (TA)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr1 228311892 228311921 -53881743 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr1 228311969 228311996 -53881668 + (TC)n Simple_repeat Simple_repeat 2 28 0 2177 131 0 0 chr1 228312081 228312394 -53881270 - AluSq SINE Alu 0 313 1 10029 170 20 3 chr1 228312572 228315106 -53878558 - L1MA3 LINE L1 -275 6030 3449 5210 200 29 8 chr1 228315110 228316553 -53877111 + L1M1 LINE L1 3162 4655 -2910 1964 156 0 13 chr1 228316553 228316855 -53876809 + AluSx SINE Alu 1 298 -14 5210 200 29 8 chr1 228316855 228317057 -53876607 + L1M1 LINE L1 4655 4851 -2714 231 88 0 0 chr1 228317710 228317744 -53875920 + (TTG)n Simple_repeat Simple_repeat 3 36 0 353 301 85 46 chr1 228318452 228318605 -53875059 - MIR SINE MIR -86 176 18 1950 141 16 3 chr1 228318853 228319158 -53874506 - AluSx SINE Alu 0 312 4 398 234 40 80 chr1 228319271 228319472 -53874192 + L2 LINE L2 3117 3309 -4 409 320 14 7 chr1 228319537 228319684 -53873980 - MIR SINE MIR -113 149 2 30 0 0 0 chr1 228320233 228320263 -53873401 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr1 228320459 228320482 -53873182 + AT_rich Low_complexity Low_complexity 1 23 0 192 200 0 0 chr1 228320974 228321014 -53872650 + CT-rich Low_complexity Low_complexity 3 42 0 1731 171 4 7 chr1 228321230 228321540 -53872124 - AluSx SINE Alu 0 312 4 383 400 41 7 chr1 228321616 228321761 -53871903 - L2 LINE L2 0 3272 3123 573 240 83 36 chr1 228322312 228322504 -53871160 + L2 LINE L2 3111 3311 -2 27 29 0 0 chr1 228323256 228323290 -53870374 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr1 228324620 228324652 -53869012 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr1 228324766 228324795 -53868869 + AT_rich Low_complexity Low_complexity 1 29 0 272 338 23 38 chr1 228324886 228325019 -53868645 - MIR SINE MIR -125 137 7 42 82 0 0 chr1 228325096 228325194 -53868470 + AT_rich Low_complexity Low_complexity 1 98 0 254 287 250 9 chr1 228325314 228325422 -53868242 + L2 LINE L2 3139 3272 0 24 0 0 0 chr1 228327044 228327068 -53866596 + AT_rich Low_complexity Low_complexity 1 24 0 511 331 47 31 chr1 228327157 228327411 -53866253 + MIR SINE MIR 1 258 -4 240 216 124 41 chr1 228327436 228327533 -53866131 + L1ME LINE L1 5619 5723 -447 189 0 0 0 chr1 228327533 228327554 -53866110 + (A)n Simple_repeat Simple_repeat 1 21 0 319 361 42 0 chr1 228328794 228328913 -53864751 - MIR SINE MIR -126 136 13 25 0 0 0 chr1 228329972 228329997 -53863667 + AT_rich Low_complexity Low_complexity 1 25 0 226 228 11 22 chr1 228334429 228334521 -53859143 + T-rich Low_complexity Low_complexity 5 95 0 1190 244 64 69 chr1 228334659 228335208 -53858456 - MLT1H LTR MaLR 0 549 4 254 351 82 23 chr1 228335473 228335644 -53858020 - L2 LINE L2 -193 3079 2899 23 68 0 0 chr1 228338606 228338650 -53855014 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 228338779 228338808 -53854856 + AT_rich Low_complexity Low_complexity 1 29 0 367 172 23 35 chr1 228339355 228339442 -53854222 + MER53 DNA DNA 102 187 -2 7329 165 17 19 chr1 228339487 228340886 -53852778 - L1PA13 LINE L1 -1679 4467 3071 5798 97 34 1 chr1 228340887 228341058 -53852606 + L1PA13 LINE L1 4462 4626 -1537 243 0 0 0 chr1 228341058 228341085 -53852579 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5798 97 34 1 chr1 228341085 228342579 -53851085 + L1PA13 LINE L1 4626 6144 -19 230 297 50 45 chr1 228342679 228342901 -53850763 - HAL1b LINE L1 -979 369 147 239 248 118 42 chr1 228343093 228343331 -53850333 - HAL1 LINE L1 -1284 1223 968 380 219 42 31 chr1 228343790 228343886 -53849778 - L1MC1 LINE L1 -17 6316 6220 21 57 0 0 chr1 228345596 228345631 -53848033 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 228345743 228345774 -53847890 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr1 228345913 228345946 -53847718 + AT_rich Low_complexity Low_complexity 1 33 0 414 0 0 0 chr1 228346523 228346569 -53847095 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 183 136 51 0 chr1 228346573 228346632 -53847032 + (TA)n Simple_repeat Simple_repeat 1 62 0 23 54 0 0 chr1 228346930 228346967 -53846697 + AT_rich Low_complexity Low_complexity 1 37 0 261 221 0 0 chr1 228347522 228347590 -53846074 + GA-rich Low_complexity Low_complexity 1 68 0 1678 175 0 24 chr1 228347983 228348280 -53845384 - AluJb SINE Alu -22 290 1 194 307 68 23 chr1 228350418 228350506 -53843158 + MIR SINE MIR 60 151 -111 211 219 123 14 chr1 228350508 228350581 -53843083 - MIR SINE MIR -2 260 180 377 370 26 0 chr1 228350631 228350785 -53842879 + MIR SINE MIR 105 262 0 238 270 256 15 chr1 228350785 228350922 -53842742 - MIR SINE MIR -86 176 7 261 335 71 32 chr1 228351334 228351489 -53842175 - MIR SINE MIR -24 238 78 529 242 172 0 chr1 228351656 228351813 -53841851 - MLT1J LTR MaLR -327 184 1 342 0 0 0 chr1 228352163 228352201 -53841463 + (CA)n Simple_repeat Simple_repeat 2 39 0 766 181 6 60 chr1 228353277 228353443 -53840221 + Tigger1 DNA MER2_type 1 157 -2261 * 1211 96 102 0 chr1 228353432 228353629 -53840035 + Tigger1 DNA MER2_type 2202 2418 0 286 338 120 35 chr1 228353748 228354316 -53839348 + L2 LINE L2 1360 1975 -1339 320 302 24 27 chr1 228355410 228355606 -53838058 + GA-rich Low_complexity Low_complexity 1 195 0 543 291 61 18 chr1 228355797 228356140 -53837524 + L1M4 LINE L1 4915 5272 -874 180 111 0 0 chr1 228356488 228356515 -53837149 + (TATG)n Simple_repeat Simple_repeat 2 28 0 276 30 0 0 chr1 228356755 228356788 -53836876 + (TG)n Simple_repeat Simple_repeat 2 34 0 2008 174 9 0 chr1 228356801 228357146 -53836518 - MER7A DNA MER2_type 0 346 1 2228 80 59 0 chr1 228357507 228357796 -53835868 + AluSp SINE Alu 1 306 -7 414 0 0 0 chr1 228358127 228358173 -53835491 + (A)n Simple_repeat Simple_repeat 1 46 0 306 333 0 10 chr1 228358744 228358840 -53834824 + MLT1H1 LTR MaLR 91 185 -370 243 131 54 54 chr1 228359655 228359823 -53833841 + (TATAA)n Simple_repeat Simple_repeat 2 169 0 208 140 35 18 chr1 228359827 228359884 -53833780 + (TA)n Simple_repeat Simple_repeat 2 59 0 229 350 19 48 chr1 228360022 228360125 -53833539 - L2 LINE L2 0 3272 3173 473 243 94 84 chr1 228360243 228360552 -53833112 - MLT1J LTR MaLR -199 312 1 252 297 69 28 chr1 228360638 228360783 -53832881 - L2 LINE L2 -214 3058 2908 213 186 136 0 chr1 228360816 228360875 -53832789 + L2 LINE L2 3205 3271 -1 205 297 159 28 chr1 228361013 228361158 -53832506 - L2 LINE L2 -2 3311 3148 487 277 117 26 chr1 228361933 228362164 -53831500 + MIR SINE MIR 1 252 -10 334 325 0 26 chr1 228364507 228364624 -53829040 + MLT1J1 LTR MaLR 2 115 -331 4508 207 30 6 chr1 228364662 228365494 -53828170 - MER21B LTR ERV1 -11 852 1 409 263 117 73 chr1 228365934 228366113 -53827551 - MER5A DNA MER1_type -2 187 1 444 139 0 0 chr1 228366324 228366403 -53827261 + (CCAA)n Simple_repeat Simple_repeat 2 80 0 25 0 0 0 chr1 228367307 228367332 -53826332 + AT_rich Low_complexity Low_complexity 1 25 0 186 286 0 0 chr1 228369078 228369120 -53824544 - MIR3 SINE MIR -7 201 160 1725 184 50 22 chr1 228370256 228370620 -53823044 - THE1C LTR MaLR -1 374 1 8673 140 36 39 chr1 228370620 228372202 -53821462 - THE1C-int LTR MaLR 0 1580 4 1697 163 70 20 chr1 228372205 228372562 -53821102 - THE1C LTR MaLR 0 375 1 739 269 101 47 chr1 228372715 228373121 -53820543 + MSTC LTR MaLR 1 428 0 1111 177 38 5 chr1 228373185 228373394 -53820270 - MER20 DNA MER1_type 0 219 4 219 69 0 0 chr1 228373677 228373706 -53819958 + (T)n Simple_repeat Simple_repeat 1 29 0 487 360 26 31 chr1 228375323 228375712 -53817952 - L1MEc LINE L1 -5973 423 37 1160 90 96 0 chr1 228375806 228375984 -53817680 + MER30 DNA MER1_type 4 198 -32 204 182 0 0 chr1 228376448 228376492 -53817172 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 344 339 8 8 chr1 228377402 228377523 -53816141 - MIR SINE MIR -95 167 47 439 316 75 11 chr1 228377728 228377902 -53815762 + MIR SINE MIR 5 189 -73 22 0 0 0 chr1 228379047 228379069 -53814595 + AT_rich Low_complexity Low_complexity 1 22 0 2023 169 26 10 chr1 228379501 228379885 -53813779 + MLT1B LTR MaLR 1 390 0 579 292 46 41 chr1 228380215 228380257 -53813407 - MIR SINE MIR 0 262 222 2014 123 0 0 chr1 228380257 228380553 -53813111 - AluSc SINE Alu 0 298 3 579 292 46 41 chr1 228380553 228380704 -53812960 - MIR SINE MIR -40 222 67 2144 128 3 0 chr1 228381071 228381375 -53812289 - AluSp SINE Alu -6 307 3 21 0 0 0 chr1 228381800 228381821 -53811843 + AT_rich Low_complexity Low_complexity 1 21 0 307 282 56 0 chr1 228382272 228382343 -53811321 - MER2 DNA MER2_type -2 343 269 1329 166 5 5 chr1 228382372 228382589 -53811075 + AluJb SINE Alu 82 298 -14 1163 177 0 0 chr1 228382589 228382781 -53810883 - MER2 DNA MER2_type -138 207 16 682 350 68 0 chr1 228382953 228383276 -53810388 + MLT1I LTR MaLR 65 409 0 349 330 17 9 chr1 228383513 228383628 -53810036 - MIR3 SINE MIR -39 169 54 369 347 142 21 chr1 228384894 228385274 -53808390 + L2 LINE L2 2591 3020 -252 199 379 11 11 chr1 228385365 228385460 -53808204 + L2 LINE L2 3208 3302 -11 205 292 0 0 chr1 228386293 228386341 -53807323 - L2 LINE L2 -12 3260 3213 663 209 0 0 chr1 228386451 228386585 -53807079 + L1M4 LINE L1 4673 4806 -1340 352 113 19 0 chr1 228386604 228386657 -53807007 + Tigger2 DNA MER2_type 1171 1224 -1494 285 208 69 0 chr1 228386665 228386737 -53806927 - MLT1H LTR MaLR -453 96 20 240 267 40 0 chr1 228386781 228386856 -53806808 - MLT1H-int LTR MaLR -25 1346 1269 3106 177 23 15 chr1 228387231 228387846 -53805818 + Tigger2 DNA MER2_type 1 620 -2098 3921 119 76 17 chr1 228387846 228388806 -53804858 - MER11A LTR ERVK 0 1266 1 * 13028 145 14 10 chr1 228388806 228390901 -53802763 + Tigger2 DNA MER2_type 615 2717 -1 1312 105 21 11 chr1 228391199 228391458 -53802206 - L1P LINE L1 -705 5426 5166 286 165 84 17 chr1 228391708 228391803 -53801861 - MLT1H LTR MaLR 0 567 462 232 346 38 57 chr1 228393671 228393798 -53799866 + L2 LINE L2 2904 3029 -243 1918 208 113 24 chr1 228393798 228394259 -53799405 - MLT1D LTR MaLR -3 502 1 232 346 38 57 chr1 228394259 228394290 -53799374 + L2 LINE L2 3029 3059 -213 354 319 92 6 chr1 228397125 228397288 -53796376 - MIR SINE MIR -72 190 14 375 319 89 6 chr1 228397624 228397793 -53795871 + MIR SINE MIR 74 256 -6 184 354 49 0 chr1 228398695 228398777 -53794887 + MIR SINE MIR 92 177 -85 228 306 16 0 chr1 228399227 228399289 -53794375 - L2 LINE L2 -831 2483 2421 3814 158 37 41 chr1 228401433 228402210 -53791454 - LTR1 LTR ERV1 0 785 12 17296 151 24 16 chr1 228402271 228405107 -53788557 - HUERS-P2 LTR ERV1 0 3088 230 539 184 24 64 chr1 228405101 228405226 -53788438 - HUERS-P2 LTR ERV1 -2968 120 1 * 4114 133 73 29 chr1 228405228 228405978 -53787686 - LTR1 LTR ERV1 -2 783 1 761 206 83 25 chr1 228407069 228407255 -53786409 - MLT1A1 LTR MaLR 0 365 165 180 0 0 0 chr1 228407255 228407275 -53786389 + (GA)n Simple_repeat Simple_repeat 2 21 0 761 206 83 25 chr1 228407275 228407292 -53786372 - MLT1A1 LTR MaLR -200 165 150 1525 189 81 3 chr1 228407293 228407578 -53786086 + MLT1A1 LTR MaLR 59 365 0 541 73 0 24 chr1 228408694 228408776 -53784888 + MADE1 DNA Mariner 1 80 0 962 310 85 21 chr1 228409079 228409178 -53784486 - LTR16B LTR ERVL 0 464 373 1668 189 7 7 chr1 228409178 228409464 -53784200 + AluJo SINE Alu 1 286 -26 942 73 0 0 chr1 228409464 228409600 -53784064 + (GGAA)n Simple_repeat Simple_repeat 3 138 0 962 310 85 21 chr1 228409600 228409935 -53783729 - LTR16B LTR ERVL -90 374 1 2014 235 73 31 chr1 228410141 228410729 -53782935 - MLT1E2 LTR MaLR 0 626 14 2029 281 84 49 chr1 228413177 228414422 -53779242 - L2 LINE L2 0 3313 2002 226 297 36 45 chr1 228414415 228414526 -53779138 - MIR SINE MIR -125 137 28 * 2122 142 0 0 chr1 228414796 228415106 -53778558 + AluSq SINE Alu 1 310 -3 730 187 173 0 chr1 228415117 228415256 -53778408 - FRAM SINE Alu -16 160 1 308 281 91 25 chr1 228415620 228415741 -53777923 - MIR SINE MIR -64 144 16 243 250 16 0 chr1 228415741 228415805 -53777859 + (TG)n Simple_repeat Simple_repeat 2 66 0 247 260 68 0 chr1 228416083 228416156 -53777508 - MIR SINE MIR 0 262 185 21 0 0 0 chr1 228416156 228416177 -53777487 + AT_rich Low_complexity Low_complexity 1 21 0 370 203 40 0 chr1 228416179 228416507 -53777157 + (TA)n Simple_repeat Simple_repeat 1 341 0 1244 196 70 64 chr1 228417498 228417871 -53775793 - LTR8A LTR ERV1 0 727 353 2027 141 0 13 chr1 228417871 228418175 -53775489 + AluSx SINE Alu 2 301 -11 208 257 10 40 chr1 228418616 228418717 -53774947 + T-rich Low_complexity Low_complexity 2 99 0 257 93 23 58 chr1 228419235 228419321 -53774343 + (TTA)n Simple_repeat Simple_repeat 2 84 0 1809 167 0 0 chr1 228420226 228420502 -53773162 - AluSx SINE Alu -32 280 5 24 32 0 0 chr1 228420738 228420769 -53772895 + AT_rich Low_complexity Low_complexity 1 31 0 1434 245 105 45 chr1 228420888 228421394 -53772270 - MLT1F LTR MaLR -6 536 1 346 295 55 106 chr1 228421564 228422000 -53771664 + L2 LINE L2 2593 2998 -274 1771 168 20 0 chr1 228422141 228422444 -53771220 - AluSx SINE Alu -3 309 1 439 282 61 31 chr1 228422693 228422856 -53770808 + L2 LINE L2 3105 3272 0 361 253 32 4 chr1 228424346 228424459 -53769205 + HsTC2 DNA Tc2 1 1832 -66 206 83 56 0 chr1 228424459 228424495 -53769169 + CT-rich Low_complexity Low_complexity 1 38 0 433 298 0 0 chr1 228424724 228424828 -53768836 - L2 LINE L2 0 3313 3210 200 200 0 0 chr1 228425156 228425201 -53768463 + MIR SINE MIR 148 192 -70 1880 138 26 13 chr1 228425291 228425596 -53768068 + AluSx SINE Alu 1 309 -3 342 333 48 6 chr1 228426799 228426967 -53766697 - MIR SINE MIR -16 246 72 307 241 106 71 chr1 228427007 228427177 -53766487 - L1ME LINE L1 -279 5842 5667 4576 182 15 72 chr1 228427182 228427919 -53765745 + L1MA7 LINE L1 4716 5493 -798 2342 105 10 0 chr1 228427919 228428224 -53765440 - AluSc SINE Alu -1 308 1 4576 182 15 72 chr1 228428224 228429085 -53764579 + L1MA7 LINE L1 5493 6220 -71 1589 141 0 4 chr1 228429085 228429326 -53764338 + AluSq SINE Alu 74 313 0 4576 182 15 72 chr1 228429326 228429394 -53764270 + L1MA7 LINE L1 6220 6290 -1 189 0 0 0 chr1 228429614 228429635 -53764029 + (A)n Simple_repeat Simple_repeat 1 21 0 322 271 83 68 chr1 228430138 228430330 -53763334 - L1ME LINE L1 -2359 5449 5255 189 319 118 80 chr1 228430702 228431809 -53761855 - L2 LINE L2 -593 2721 1573 194 246 195 74 chr1 228431889 228432104 -53761560 - L2 LINE L2 -1900 1414 1174 24 67 0 0 chr1 228433904 228433949 -53759715 + AT_rich Low_complexity Low_complexity 1 45 0 2040 132 0 10 chr1 228437301 228437604 -53756060 - AluSc SINE Alu -9 300 1 22 35 0 0 chr1 228438331 228438360 -53755304 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1 228438843 228438864 -53754800 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 234 193 35 18 chr1 228438866 228438923 -53754741 + GA-rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr1 228439402 228439437 -53754227 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 228440479 228440515 -53753149 + AT_rich Low_complexity Low_complexity 1 36 0 203 339 59 17 chr1 228442383 228442501 -53751163 + L2 LINE L2 3180 3302 -11 243 63 95 0 chr1 228443069 228443132 -53750532 + (TA)n Simple_repeat Simple_repeat 1 69 0 321 336 37 54 chr1 228443293 228443591 -53750073 + MARNA DNA Mariner 262 554 -32 7227 41 7 7 chr1 228445681 228446582 -53747082 - L1PA5 LINE L1 0 6154 5254 11676 36 3 0 chr1 228446589 228448014 -53745650 + L1PA5 LINE L1 3821 5249 -897 416 251 6 23 chr1 228448116 228448291 -53745373 + GA-rich Low_complexity Low_complexity 3 174 0 22 35 0 0 chr1 228448660 228448689 -53744975 + AT_rich Low_complexity Low_complexity 1 29 0 199 91 23 23 chr1 228450432 228450476 -53743188 + (TTTTTG)n Simple_repeat Simple_repeat 3 46 0 267 31 0 0 chr1 228451546 228451578 -53742086 + (TG)n Simple_repeat Simple_repeat 1 32 0 752 108 0 8 chr1 228452158 228452278 -53741386 - AluY SINE Alu -14 297 179 2302 124 25 3 chr1 228452535 228452891 -53740773 + THE1B LTR MaLR 1 364 0 544 350 34 19 chr1 228452945 228453204 -53740460 + L2 LINE L2 2772 3041 -272 804 328 49 31 chr1 228453315 228453702 -53739962 - L2 LINE L2 0 3313 2920 351 276 110 14 chr1 228453710 228453855 -53739809 + L2 LINE L2 3154 3312 -1 315 304 65 0 chr1 228453863 228453955 -53739709 - MIR SINE MIR -112 150 53 354 279 87 0 chr1 228454261 228454391 -53739273 + MIR3 SINE MIR 57 198 -10 1693 185 3 3 chr1 228454818 228455147 -53738517 - AluJo SINE Alu 0 329 1 239 188 0 31 chr1 228456245 228456309 -53737355 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 21 0 0 0 chr1 228456310 228456331 -53737333 + AT_rich Low_complexity Low_complexity 1 21 0 216 344 15 30 chr1 228458309 228458440 -53735224 + MIR SINE MIR 68 196 -66 272 313 105 43 chr1 228458454 228458599 -53735065 + MIR SINE MIR 11 159 -49 602 60 12 0 chr1 228458608 228458691 -53734973 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 1463 179 54 14 chr1 228459050 228459330 -53734334 - AluJb SINE Alu -21 291 1 601 204 19 38 chr1 228459414 228459571 -53734093 + L1MB3 LINE L1 5652 5805 -378 23 78 0 0 chr1 228459572 228459623 -53734041 + AT_rich Low_complexity Low_complexity 1 51 0 1825 170 30 30 chr1 228459634 228460029 -53733635 + L1MB3 LINE L1 5787 6181 -2 23 33 0 0 chr1 228460213 228460243 -53733421 + AT_rich Low_complexity Low_complexity 1 30 0 518 328 39 15 chr1 228460541 228460879 -53732785 + L1ME3A LINE L1 5604 5949 -221 491 312 14 7 chr1 228460917 228461055 -53732609 + MER91C DNA MER1_type 2 140 0 284 116 0 0 chr1 228462186 228462229 -53731435 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 25 75 0 0 chr1 228465627 228465680 -53727984 + AT_rich Low_complexity Low_complexity 1 53 0 236 354 111 20 chr1 228467501 228467699 -53725965 - L3 LINE CR1 -566 1011 796 380 259 233 0 chr1 228468465 228468581 -53725083 + MER5A DNA MER1_type 41 183 -6 22 0 0 0 chr1 228469113 228469135 -53724529 + AT_rich Low_complexity Low_complexity 1 22 0 1372 223 0 14 chr1 228469211 228469528 -53724136 + AluJb SINE Alu 6 318 0 315 0 0 0 chr1 228469926 228469961 -53723703 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 0 0 0 chr1 228469960 228469980 -53723684 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 822 223 71 5 chr1 228470654 228470838 -53722826 + MER20 DNA MER1_type 22 217 -2 24 32 0 0 chr1 228471988 228472019 -53721645 + AT_rich Low_complexity Low_complexity 1 31 0 286 308 86 8 chr1 228473270 228473387 -53720277 + MIR3 SINE MIR 77 202 -6 24 32 0 0 chr1 228475340 228475371 -53718293 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr1 228476467 228476498 -53717166 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr1 228476784 228476830 -53716834 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 228477477 228477498 -53716166 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 228479141 228479164 -53714500 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr1 228482427 228482451 -53711213 + AT_rich Low_complexity Low_complexity 1 24 0 195 100 0 0 chr1 228483778 228483808 -53709856 + (A)n Simple_repeat Simple_repeat 1 30 0 1259 261 86 35 chr1 228485499 228486069 -53707595 + L2 LINE L2 2516 3152 -161 1970 111 53 39 chr1 228486069 228486428 -53707236 - THE1B LTR MaLR 0 364 1 1259 261 86 35 chr1 228486428 228486594 -53707070 + L2 LINE L2 3152 3308 -5 22 0 0 0 chr1 228487538 228487560 -53706104 + AT_rich Low_complexity Low_complexity 1 22 0 729 196 65 0 chr1 228488778 228488916 -53704748 + MLT2D LTR ERVL 220 366 -48 216 302 0 0 chr1 228490236 228490299 -53703365 + CT-rich Low_complexity Low_complexity 2 64 0 14414 140 24 5 chr1 228491840 228494213 -53699451 + Tigger1 DNA MER2_type 1 2418 0 2037 154 0 0 chr1 228495224 228495535 -53698129 - AluSx SINE Alu -1 311 1 703 196 57 19 chr1 228496139 228496297 -53697367 + AluJo SINE Alu 123 286 -26 1152 182 0 0 chr1 228496655 228496847 -53696817 - AluSx SINE Alu -120 192 1 521 15 15 0 chr1 228496860 228496926 -53696738 + (TA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr1 228497783 228497805 -53695859 + AT_rich Low_complexity Low_complexity 1 22 0 428 345 67 10 chr1 228498192 228498386 -53695278 + MIR SINE MIR 48 252 -10 245 281 0 0 chr1 228500590 228500654 -53693010 - MIR3 SINE MIR -35 173 110 21 0 0 0 chr1 228502473 228502494 -53691170 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1 228503072 228503099 -53690565 + AT_rich Low_complexity Low_complexity 1 27 0 244 200 31 0 chr1 228505523 228505588 -53688076 + (TA)n Simple_repeat Simple_repeat 1 67 0 23 54 0 0 chr1 228506261 228506298 -53687366 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr1 228506586 228506612 -53687052 + AT_rich Low_complexity Low_complexity 1 26 0 231 36 0 0 chr1 228507694 228507722 -53685942 + (TA)n Simple_repeat Simple_repeat 1 28 0 184 125 42 0 chr1 228509509 228509536 -53684128 + GA-rich Low_complexity Low_complexity 1 25 -25 180 111 0 0 chr1 228509536 228509563 -53684101 + (TG)n Simple_repeat Simple_repeat 1 27 0 184 125 42 0 chr1 228509563 228509583 -53684081 + GA-rich Low_complexity Low_complexity 25 50 0 22 0 0 0 chr1 228510623 228510645 -53683019 + AT_rich Low_complexity Low_complexity 1 22 0 223 253 58 35 chr1 228512602 228512689 -53680975 - MIR3 SINE MIR -21 187 99 247 361 127 0 chr1 228512991 228513157 -53680507 - MIR SINE MIR -25 237 51 1077 341 157 38 chr1 228514334 228514578 -53679086 + L2 LINE L2 539 753 -2561 2425 74 3 0 chr1 228514578 228514890 -53678774 - AluSp SINE Alu 0 313 1 1077 341 157 38 chr1 228514890 228515174 -53678490 + L2 LINE L2 753 1002 -2312 2463 81 0 0 chr1 228515174 228515482 -53678182 - AluY SINE Alu -3 308 1 1077 341 157 38 chr1 228515482 228516203 -53677461 + L2 LINE L2 1002 1636 -1678 2868 70 0 3 chr1 228516203 228516577 -53677087 + L1PA6 LINE L1 5777 6149 -5 1077 341 157 38 chr1 228516577 228517310 -53676354 + L2 LINE L2 1636 2758 -556 1059 318 114 26 chr1 228517820 228518704 -53674960 + L2 LINE L2 2365 3313 0 23 0 0 0 chr1 228518710 228518733 -53674931 + AT_rich Low_complexity Low_complexity 1 23 0 2308 94 0 0 chr1 228518961 228519268 -53674396 - AluY SINE Alu -4 307 1 2122 123 0 0 chr1 228519698 228520018 -53673646 + AluSx SINE Alu 1 312 0 214 222 0 83 chr1 228520095 228520167 -53673497 - MIR SINE MIR -78 184 119 662 227 23 0 chr1 228520800 228520928 -53672736 - FLAM_A SINE Alu -2 131 1 426 291 159 0 chr1 228521255 228521406 -53672258 - MER5A DNA MER1_type -1 188 14 217 254 90 0 chr1 228525268 228525335 -53668329 - L2 LINE L2 -6 3307 3235 235 222 0 0 chr1 228527269 228527314 -53666350 + L2 LINE L2 2716 2760 -554 185 298 18 0 chr1 228528314 228528371 -53665293 + L2 LINE L2 3256 3313 0 1189 219 137 22 chr1 228528699 228529064 -53664600 + MLT1D LTR MaLR 97 503 -2 4931 185 36 33 chr1 228529069 228530506 -53663158 + L1M3 LINE L1 4208 5646 -688 2064 147 37 0 chr1 228530506 228530854 -53662810 - MER46B DNA MER2_type 0 236 1 4931 185 36 33 chr1 228530854 228530914 -53662750 + L1M3 LINE L1 5646 5704 -630 2114 214 29 0 chr1 228531606 228532021 -53661643 - MER44D DNA MER2_type -1 604 123 * 12577 138 11 9 chr1 228532019 228534017 -53659647 - Tigger1 DNA MER2_type -416 2002 1 2107 138 3 32 chr1 228534308 228534686 -53658978 - L1PB1 LINE L1 -3 6864 6498 9627 183 28 14 chr1 228534735 228535220 -53658444 - L1PB1 LINE L1 -362 6505 6028 2340 86 0 3 chr1 228535220 228535522 -53658142 - AluY SINE Alu -10 301 1 9627 183 28 14 chr1 228535522 228536427 -53657237 - L1PB1 LINE L1 -839 6028 5137 288 0 0 0 chr1 228536427 228536459 -53657205 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 9627 183 28 14 chr1 228536459 228540142 -53653522 - L1PB1 LINE L1 -1730 5137 1332 277 222 0 0 chr1 228540160 228540214 -53653450 - L1PB1 LINE L1 -5716 1147 1094 1596 165 100 24 chr1 228540216 228540585 -53653079 - L1PB1 LINE L1 -5815 1048 652 573 245 54 0 chr1 228540582 228540766 -53652898 - L1PB1 LINE L1 -6664 199 6 * 188 327 161 32 chr1 228542541 228542758 -53650906 + L3 LINE CR1 1173 1417 -160 2753 115 79 5 chr1 228543297 228543741 -53649923 + L1PA13 LINE L1 5685 6161 -2 588 338 87 46 chr1 228543995 228544492 -53649172 - L2 LINE L2 -646 2668 2152 317 303 152 6 chr1 228545137 228545315 -53648349 + L2 LINE L2 2703 2906 -408 2031 127 0 0 chr1 228545365 228545669 -53647995 - AluSx SINE Alu 0 304 1 356 345 118 42 chr1 228545703 228545990 -53647674 + L2 LINE L2 3005 3313 0 238 259 0 0 chr1 228545998 228546052 -53647612 + (TGAA)n Simple_repeat Simple_repeat 2 55 0 27 49 0 0 chr1 228546732 228546773 -53646891 + AT_rich Low_complexity Low_complexity 1 41 0 3851 218 52 22 chr1 228546896 228547947 -53645717 + Tigger6a DNA MER2_type 1 1083 0 609 279 110 88 chr1 228548552 228549043 -53644621 - LTR33 LTR ERVL -6 515 14 2083 114 3 0 chr1 228549726 228550015 -53643649 + AluSq SINE Alu 1 290 -23 364 330 107 10 chr1 228550403 228550694 -53642970 + HERVL LTR ERVL 936 1254 -4400 1466 331 53 44 chr1 228550989 228551360 -53642304 + HERVL LTR ERVL 1666 2032 -3732 2029 60 40 63 chr1 228551360 228551661 -53642003 - AluY SINE Alu -12 299 6 1466 331 53 44 chr1 228551661 228552156 -53641508 + HERVL LTR ERVL 2032 2540 -3224 413 307 60 31 chr1 228552419 228552771 -53640893 - L1ME LINE L1 -4981 1224 863 494 321 91 67 chr1 228552772 228553280 -53640384 - L1ME LINE L1 -5546 850 331 23 33 0 0 chr1 228553633 228553663 -53640001 + AT_rich Low_complexity Low_complexity 1 30 0 1549 170 3 35 chr1 228553706 228553994 -53639670 - AluJb SINE Alu -12 300 22 22 0 0 0 chr1 228554454 228554476 -53639188 + AT_rich Low_complexity Low_complexity 1 22 0 248 252 112 49 chr1 228554580 228554723 -53638941 + L2 LINE L2 3162 3313 0 369 0 0 0 chr1 228555113 228555154 -53638510 + (TG)n Simple_repeat Simple_repeat 1 41 0 27 96 0 0 chr1 228555627 228555710 -53637954 + AT_rich Low_complexity Low_complexity 1 83 0 476 300 23 0 chr1 228556654 228556784 -53636880 + L2 LINE L2 3181 3313 0 182 338 0 15 chr1 228556985 228557053 -53636611 + MIR SINE MIR 86 152 -110 2200 74 10 10 chr1 228557656 228557955 -53635709 - AluSc SINE Alu -10 299 1 185 282 61 110 chr1 228558544 228558707 -53634957 + MIR3 SINE MIR 34 187 -21 345 248 110 18 chr1 228558818 228558927 -53634737 - MIR SINE MIR -46 216 98 264 388 25 6 chr1 228559107 228559267 -53634397 + MIR SINE MIR 96 258 -4 702 321 81 30 chr1 228559674 228560170 -53633494 - Charlie7 DNA MER1_type -2009 603 83 864 347 116 15 chr1 228560527 228561071 -53632593 - L2 LINE L2 -359 2955 2357 305 292 113 70 chr1 228561123 228561424 -53632240 - L2 LINE L2 -849 2465 2152 1683 180 72 14 chr1 228561604 228561949 -53631715 - MER47A DNA MER2_type 0 366 2 2621 99 0 24 chr1 228563370 228563753 -53629911 - THE1C LTR MaLR -1 374 1 259 254 16 0 chr1 228563802 228563865 -53629799 + L2 LINE L2 3209 3272 0 247 261 46 0 chr1 228564093 228564158 -53629506 + MIR SINE MIR 124 191 -71 21 0 0 0 chr1 228565477 228565498 -53628166 + AT_rich Low_complexity Low_complexity 1 21 0 182 355 32 0 chr1 228567266 228567328 -53626336 - L3 LINE CR1 -122 1455 1392 28 61 0 0 chr1 228568778 228568827 -53624837 + AT_rich Low_complexity Low_complexity 1 49 0 390 21 0 0 chr1 228569074 228569121 -53624543 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 368 23 53 chr1 228569677 228569848 -53623816 + MIR3 SINE MIR 2 167 -41 2788 13 0 0 chr1 228569852 228570161 -53623503 - AluYb8 SINE Alu -9 309 1 200 313 117 75 chr1 228570236 228570476 -53623188 + L2 LINE L2 3042 3291 -22 610 153 49 0 chr1 228570614 228570777 -53622887 + (TA)n Simple_repeat Simple_repeat 2 172 0 183 229 0 0 chr1 228571336 228571371 -53622293 - MIR SINE MIR -129 79 45 181 316 0 38 chr1 228571914 228571993 -53621671 + L2 LINE L2 1358 1433 -1881 270 0 0 0 chr1 228572936 228572966 -53620698 + (TG)n Simple_repeat Simple_repeat 1 30 0 544 289 117 5 chr1 228573348 228573545 -53620119 - MIR SINE MIR 0 262 44 654 62 0 41 chr1 228573669 228573805 -53619859 - L1PA2 LINE L1 0 6155 6061 378 219 40 126 chr1 228574032 228574183 -53619481 + MIR SINE MIR 35 172 -90 404 329 19 0 chr1 228574465 228574626 -53619038 + MIR SINE MIR 44 207 -55 22 0 0 0 chr1 228575770 228575792 -53617872 + AT_rich Low_complexity Low_complexity 1 22 0 213 277 0 0 chr1 228576020 228576067 -53617597 + GA-rich Low_complexity Low_complexity 5 51 0 1255 71 0 76 chr1 228578970 228579036 -53614628 + L1PB1 LINE L1 5970 6039 -112 2253 90 0 19 chr1 228579036 228579348 -53614316 + AluSg SINE Alu 1 306 -4 1255 71 0 76 chr1 228579348 228579478 -53614186 + L1PB1 LINE L1 6039 6151 0 235 391 74 22 chr1 228579596 228579826 -53613838 - L2 LINE L2 -493 2821 2580 853 281 77 57 chr1 228580235 228580882 -53612782 - HAL1 LINE L1 -298 2209 1550 230 308 54 8 chr1 228580896 228581026 -53612638 - HAL1 LINE L1 -1034 1473 1338 232 342 26 0 chr1 228581028 228581104 -53612560 - L2 LINE L2 -1 3312 3235 424 217 17 100 chr1 228581466 228581646 -53612018 + LTR41 LTR ERVL 599 763 -10 21 71 0 0 chr1 228581661 228581703 -53611961 + AT_rich Low_complexity Low_complexity 1 42 0 674 216 25 109 chr1 228583965 228583984 -53609680 - MIR SINE MIR 0 262 243 2064 129 30 0 chr1 228583984 228584287 -53609377 + AluSx SINE Alu 1 312 0 674 216 25 109 chr1 228584287 228584526 -53609138 - MIR SINE MIR -19 243 26 516 32 0 0 chr1 228584823 228584885 -53608779 + (CA)n Simple_repeat Simple_repeat 2 63 0 23 0 0 0 chr1 228586847 228586870 -53606794 + AT_rich Low_complexity Low_complexity 1 23 0 344 376 16 0 chr1 228586941 228587066 -53606598 + L2 LINE L2 3181 3307 -6 190 289 44 83 chr1 228587425 228587605 -53606059 + L2 LINE L2 1452 1624 -1690 232 375 90 44 chr1 228588510 228588945 -53604719 + L2 LINE L2 2028 2482 -832 1724 259 73 43 chr1 228589751 228590326 -53603338 + MLT1E LTR MaLR 1 592 -1 23 54 0 0 chr1 228590896 228590933 -53602731 + AT_rich Low_complexity Low_complexity 1 37 0 490 303 52 56 chr1 228592264 228592807 -53600857 + L2 LINE L2 2650 3183 -130 430 314 72 10 chr1 228592927 228593121 -53600543 + MIR SINE MIR 54 259 -3 219 220 0 0 chr1 228593128 228593178 -53600486 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 213 307 89 0 chr1 228594573 228594674 -53598990 - L2 LINE L2 0 3313 3204 583 320 126 0 chr1 228594856 228595087 -53598577 + MIR SINE MIR 3 262 0 453 359 6 0 chr1 228595732 228595888 -53597776 - MIR3 SINE MIR -18 190 34 46 54 0 0 chr1 228596223 228596297 -53597367 + AT_rich Low_complexity Low_complexity 1 74 0 9203 18 0 0 chr1 228597163 228598226 -53595438 - L1HS LINE L1 -1130 5016 3954 7920 13 0 0 chr1 228598220 228599371 -53594293 + L1HS LINE L1 5004 6154 -1 * 303 279 57 36 chr1 228599561 228599701 -53593963 - L1 LINE L1 -3733 2413 2271 840 224 6 6 chr1 228600178 228600339 -53593325 - FRAM SINE Alu -16 160 1 2368 87 0 3 chr1 228600348 228600648 -53593016 - AluSc SINE Alu -10 299 1 231 289 24 12 chr1 228600702 228600785 -53592879 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 277 292 54 18 chr1 228601178 228601346 -53592318 - HAL1 LINE L1 -1187 1320 1147 1529 145 57 0 chr1 228602315 228602577 -53591087 + MSTA LTR MaLR 152 428 0 2143 322 47 6 chr1 228602577 228603382 -53590282 - HERV16 LTR ERVL -2503 2493 1656 438 79 0 0 chr1 228603844 228603907 -53589757 + (TG)n Simple_repeat Simple_repeat 1 63 0 549 340 101 8 chr1 228604086 228604333 -53589331 + L3 LINE CR1 423 692 -885 2355 107 11 8 chr1 228604378 228604732 -53588932 - THE1A LTR MaLR 0 355 1 11733 91 4 1 chr1 228604732 228606307 -53587357 - THE1A-int LTR MaLR 0 1580 1 2256 124 8 8 chr1 228606307 228606662 -53587002 - THE1A LTR MaLR 0 355 1 418 303 23 8 chr1 228606732 228606864 -53586800 - MIR3 SINE MIR -43 165 32 494 311 124 58 chr1 228606983 228607362 -53586302 + L3 LINE CR1 814 1217 -360 31 68 0 0 chr1 228607811 228607870 -53585794 + AT_rich Low_complexity Low_complexity 1 59 0 34 0 0 0 chr1 228608343 228608377 -53585287 + AT_rich Low_complexity Low_complexity 1 34 0 354 228 148 0 chr1 228609436 228609537 -53584127 + L2 LINE L2 3180 3295 -18 192 40 0 0 chr1 228610664 228610689 -53582975 + (TC)n Simple_repeat Simple_repeat 2 26 0 1592 187 7 11 chr1 228610697 228610980 -53582684 - AluJo SINE Alu -30 282 1 26 0 0 0 chr1 228611186 228611212 -53582452 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr1 228611508 228611545 -53582119 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr1 228612907 228612937 -53580727 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 228615962 228615991 -53577673 + AT_rich Low_complexity Low_complexity 1 29 0 287 337 123 12 chr1 228616050 228616213 -53577451 - MIR SINE MIR -71 191 11 283 287 32 21 chr1 228617544 228617638 -53576026 - MIR3 SINE MIR 0 208 114 188 111 28 0 chr1 228618669 228618705 -53574959 + (CA)n Simple_repeat Simple_repeat 2 38 0 936 356 39 18 chr1 228619492 228620059 -53573605 + L1PA16 LINE L1 788 1366 -6208 1986 228 48 16 chr1 228620549 228625713 -53567951 + L1PA16 LINE L1 2182 7574 -18 25 51 0 0 chr1 228626123 228626162 -53567502 + AT_rich Low_complexity Low_complexity 1 39 0 1832 147 23 3 chr1 228626295 228626594 -53567070 + AluSg1 SINE Alu 2 306 -3 930 201 0 0 chr1 228626830 228626984 -53566680 + FRAM SINE Alu 1 150 -26 26 30 0 0 chr1 228626984 228627017 -53566647 + AT_rich Low_complexity Low_complexity 1 33 0 1423 196 3 45 chr1 228627022 228627308 -53566356 + AluJo SINE Alu 7 280 -32 398 203 31 0 chr1 228629433 228629561 -53564103 + (TA)n Simple_repeat Simple_repeat 2 133 0 252 143 0 0 chr1 228630081 228630123 -53563541 + (TG)n Simple_repeat Simple_repeat 2 43 0 2790 19 0 0 chr1 228630236 228630547 -53563117 + AluY SINE Alu 1 311 0 210 327 0 0 chr1 228630705 228630757 -53562907 - L2 LINE L2 -15 3298 3247 214 306 59 71 chr1 228630757 228630842 -53562822 + L2 LINE L2 3189 3272 0 901 283 160 3 chr1 228631171 228631514 -53562150 - MLT1J2 LTR MaLR -53 397 1 24 67 0 0 chr1 228631821 228631866 -53561798 + AT_rich Low_complexity Low_complexity 1 45 0 216 97 0 0 chr1 228632069 228632100 -53561564 + (T)n Simple_repeat Simple_repeat 1 31 0 1366 122 5 0 chr1 228632309 228632522 -53561142 + L1PB1 LINE L1 5934 6147 -4 23 78 0 0 chr1 228632777 228632828 -53560836 + AT_rich Low_complexity Low_complexity 1 51 0 27 81 0 0 chr1 228633172 228633234 -53560430 + AT_rich Low_complexity Low_complexity 1 62 0 278 315 54 0 chr1 228633892 228633984 -53559680 + MIR SINE MIR 13 109 -153 5751 189 16 22 chr1 228634244 228635951 -53557713 + L1MC1 LINE L1 4642 6333 0 26 0 0 0 chr1 228635951 228635977 -53557687 + AT_rich Low_complexity Low_complexity 1 26 0 799 353 94 15 chr1 228636584 228637404 -53556260 - L2 LINE L2 -1 3312 2429 465 313 30 30 chr1 228637446 228637647 -53556017 + MER20B DNA MER1_type 3 203 -580 780 224 53 27 chr1 228638623 228638886 -53554778 + MER20B DNA MER1_type 514 783 0 815 325 55 3 chr1 228638886 228639270 -53554394 - L2 LINE L2 -1092 2222 1819 245 220 20 0 chr1 228639567 228639617 -53554047 + L2 LINE L2 3222 3272 0 24 32 0 0 chr1 228640826 228640857 -53552807 + AT_rich Low_complexity Low_complexity 1 31 0 192 97 0 0 chr1 228641047 228641078 -53552586 + (TC)n Simple_repeat Simple_repeat 2 32 0 331 256 33 74 chr1 228641655 228641776 -53551888 - MIR3 SINE MIR -18 190 75 236 350 27 38 chr1 228644097 228644283 -53549381 - L3 LINE CR1 -265 1312 1129 811 271 67 31 chr1 228645184 228645542 -53548122 + HAL1 LINE L1 8 378 -2129 * 1727 248 164 5 chr1 228645525 228646161 -53547503 + L1ME1 LINE L1 5426 6162 -4 1047 301 126 15 chr1 228646194 228646725 -53546939 + HAL1 LINE L1 362 951 -1556 2383 266 60 64 chr1 228646809 228647851 -53545813 + HAL1 LINE L1 1116 2152 -355 264 30 0 0 chr1 228647851 228647884 -53545780 + (TG)n Simple_repeat Simple_repeat 1 33 0 2383 266 60 64 chr1 228647884 228648239 -53545425 + HAL1 LINE L1 2152 2507 0 22 0 0 0 chr1 228648249 228648271 -53545393 + AT_rich Low_complexity Low_complexity 1 22 0 2227 68 82 23 chr1 228648284 228648651 -53545013 + MLT2A1 LTR ERVL 1 444 0 2010 201 75 65 chr1 228649401 228650018 -53543646 + MLT1E3 LTR MaLR 1 623 -1 300 53 0 0 chr1 228650095 228650133 -53543531 + (CCTAT)n Simple_repeat Simple_repeat 4 41 0 1035 261 118 65 chr1 228650357 228651051 -53542613 + L1ME LINE L1 1587 2317 -4079 2076 107 29 0 chr1 228651055 228651336 -53542328 + AluSc SINE Alu 1 289 -20 441 101 46 9 chr1 228651336 228651445 -53542219 + (TA)n Simple_repeat Simple_repeat 1 113 0 1773 239 146 6 chr1 228651466 228652143 -53541521 + L1ME LINE L1 2318 3089 -3126 472 249 81 25 chr1 228652177 228652374 -53541290 + L1ME LINE L1 5602 5809 -426 1540 227 123 30 chr1 228652401 228652895 -53540769 + L1ME1 LINE L1 5622 6161 -5 201 74 0 0 chr1 228653336 228653363 -53540301 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr1 228656605 228656627 -53537037 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 228657220 228657242 -53536422 + (T)n Simple_repeat Simple_repeat 1 22 0 405 0 0 0 chr1 228659486 228659531 -53534133 + (CA)n Simple_repeat Simple_repeat 2 46 0 240 119 51 17 chr1 228659648 228659707 -53533957 + GA-rich Low_complexity Low_complexity 3 63 0 1899 123 14 4 chr1 228659887 228660213 -53533451 - AluSc SINE Alu 0 329 1 23 54 0 0 chr1 228660841 228660878 -53532786 + AT_rich Low_complexity Low_complexity 1 37 0 667 194 42 28 chr1 228661549 228661693 -53531971 + MER20 DNA MER1_type 73 218 -1 277 174 14 29 chr1 228661979 228662048 -53531616 + L1MC5 LINE L1 7483 7550 -411 1059 175 14 38 chr1 228662049 228662260 -53531404 - AluJo SINE Alu -20 292 87 839 163 135 28 chr1 228662329 228662617 -53531047 + L1MC5 LINE L1 7586 7904 -57 1424 287 91 33 chr1 228662629 228663890 -53529774 + L1ME3A LINE L1 4820 6158 -12 340 318 79 51 chr1 228664574 228664788 -53528876 - MIR SINE MIR -7 255 36 264 231 0 0 chr1 228664911 228664963 -53528701 + LTR30 LTR ERV1 1 52 -670 1282 131 39 99 chr1 228664969 228665278 -53528386 + LTR12 LTR ERV1 55 277 -437 336 263 10 0 chr1 228665278 228665377 -53528287 + LTR30 LTR ERV1 544 643 -79 27763 118 22 22 chr1 228665413 228667107 -53526557 + HERV9 LTR ERV1 830 2522 -5877 2066 67 15 8 chr1 228667107 228667375 -53526289 - AluY SINE Alu -13 298 29 27763 118 22 22 chr1 228667375 228670509 -53523155 + HERV9 LTR ERV1 2522 4983 -3416 5264 104 31 0 chr1 228670507 228671254 -53522410 + HERV9 LTR ERV1 7626 8395 -4 * 226 269 0 0 chr1 228671258 228671310 -53522354 + LTR30 LTR ERV1 1 52 -670 748 134 60 30 chr1 228671310 228671444 -53522220 + LTR12 LTR ERV1 53 190 -524 1349 120 204 155 chr1 228671445 228671852 -53521812 + LTR12 LTR ERV1 60 486 -228 1381 253 54 16 chr1 228671891 228672087 -53521577 + MLT1D LTR MaLR 1 188 -317 2255 103 0 3 chr1 228672087 228672388 -53521276 + AluSg SINE Alu 6 305 -5 1381 253 54 16 chr1 228672388 228672634 -53521030 + MLT1D LTR MaLR 188 460 -45 3261 71 0 51 chr1 228672986 228673439 -53520225 + MLT2A1 LTR ERVL 1 430 -14 337 206 20 0 chr1 228673439 228673541 -53520123 + (TA)n Simple_repeat Simple_repeat 1 104 0 357 39 78 0 chr1 228673558 228673609 -53520055 + MLT2A1 LTR ERVL 390 444 0 417 287 144 6 chr1 228674065 228674239 -53519425 - MIR SINE MIR -34 228 31 419 251 109 50 chr1 228674829 228675156 -53518508 - LTR33A LTR ERVL -50 743 297 230 318 118 41 chr1 228675293 228675463 -53518201 - LTR50 LTR ERVL -595 200 18 2027 159 20 57 chr1 228675784 228675830 -53517834 - L1MB1 LINE L1 0 7128 7082 1944 158 7 3 chr1 228675830 228676134 -53517530 - AluSx SINE Alu -5 307 3 2027 159 20 57 chr1 228676134 228676546 -53517118 - L1MB1 LINE L1 -46 7082 6687 9141 218 61 4 chr1 228676572 228679005 -53514659 - L1MB1 LINE L1 -1300 5806 3236 5478 109 8 0 chr1 228679007 228680015 -53513649 - L1PA15 LINE L1 -2 6163 5159 5560 204 25 8 chr1 228680015 228681240 -53512424 + L1PA15 LINE L1 3902 5147 -999 2485 259 72 44 chr1 228681235 228682978 -53510686 - L1MB1 LINE L1 -3861 3245 1525 * 229 188 0 42 chr1 228683192 228683240 -53510424 - L1M3d LINE L1 -5306 825 780 238 307 68 11 chr1 228683343 228683431 -53510233 - L1M3d LINE L1 -5239 902 810 468 323 33 56 chr1 228683646 228684062 -53509602 - L1MB1 LINE L1 -5696 1341 60 497 293 46 53 chr1 228684294 228684557 -53509107 + MIR SINE MIR 2 262 0 22 35 0 0 chr1 228684911 228684940 -53508724 + AT_rich Low_complexity Low_complexity 1 29 0 270 324 73 7 chr1 228685138 228685274 -53508390 - MIR3 SINE MIR -12 196 52 21 0 0 0 chr1 228685526 228685547 -53508117 + AT_rich Low_complexity Low_complexity 1 21 0 199 379 78 26 chr1 228685697 228685813 -53507851 + L2 LINE L2 3128 3249 -23 608 300 30 30 chr1 228685837 228686067 -53507597 - MIR SINE MIR -13 249 20 204 127 42 42 chr1 228686303 228686374 -53507290 + (TAA)n Simple_repeat Simple_repeat 2 72 0 569 189 27 20 chr1 228686376 228686519 -53507145 - MLT1A1 LTR MaLR -132 258 74 238 293 35 35 chr1 228686546 228686662 -53507002 - MIR SINE MIR -64 198 83 910 280 116 43 chr1 228686738 228687084 -53506580 + MER77 LTR ERV1 231 601 -4 436 202 0 67 chr1 228687086 228687190 -53506474 - MLT1A1 LTR MaLR -277 97 1 3521 245 28 40 chr1 228688092 228688384 -53505280 + HERVL74 LTR ERVL 3897 4191 -1494 1713 149 4 29 chr1 228688384 228688659 -53505005 + AluSq SINE Alu 32 299 -14 2227 118 0 3 chr1 228688659 228688972 -53504692 + AluSx SINE Alu 1 312 0 3521 245 28 40 chr1 228688972 228690031 -53503633 + HERVL74 LTR ERVL 4189 5234 -451 979 248 5 5 chr1 228690029 228690239 -53503425 + HERVL74 LTR ERVL 5387 5596 -89 * 1944 198 11 76 chr1 228690279 228690753 -53502911 + MER74B LTR ERVL 41 483 -139 388 229 48 19 chr1 228690888 228690993 -53502671 - MER5B DNA MER1_type -68 110 3 215 328 41 49 chr1 228691199 228691321 -53502343 + MIR SINE MIR 66 186 -76 211 241 101 38 chr1 228692284 228692363 -53501301 - MIR SINE MIR -142 120 37 26 50 0 0 chr1 228692437 228692477 -53501187 + AT_rich Low_complexity Low_complexity 1 40 0 231 36 0 0 chr1 228693087 228693115 -53500549 + (T)n Simple_repeat Simple_repeat 1 28 0 26 30 0 0 chr1 228693774 228693807 -53499857 + AT_rich Low_complexity Low_complexity 1 33 0 189 267 186 23 chr1 228694423 228694509 -53499155 + L3b LINE CR1 1220 1319 -264 496 266 14 22 chr1 228695086 228695225 -53498439 + MIR3 SINE MIR 71 208 0 875 177 50 15 chr1 228695476 228695674 -53497990 - L1MC2 LINE L1 -2 6342 6138 498 307 215 0 chr1 228695707 228695912 -53497752 - MIR SINE MIR -13 249 1 257 126 126 0 chr1 228696022 228696109 -53497555 + (TTAAA)n Simple_repeat Simple_repeat 3 100 0 299 299 73 0 chr1 228696571 228696708 -53496956 - MER103 DNA DNA -18 148 2 1674 199 3 0 chr1 228696931 228697227 -53496437 + AluJo SINE Alu 1 297 -15 409 262 115 97 chr1 228697386 228697838 -53495826 - MLT1H LTR MaLR -36 513 1 24 0 0 0 chr1 228697924 228697948 -53495716 + AT_rich Low_complexity Low_complexity 1 24 0 624 333 67 13 chr1 228698074 228698476 -53495188 - LTR16A LTR ERVL -12 445 13 288 310 209 5 chr1 228698487 228698674 -53494990 + L3 LINE CR1 1348 1572 -5 1866 171 0 0 chr1 228698872 228699177 -53494487 + AluJo SINE Alu 6 310 -2 2216 91 3 47 chr1 228699724 228700042 -53493622 - AluSg SINE Alu -6 304 1 25 0 0 0 chr1 228700051 228700076 -53493588 + AT_rich Low_complexity Low_complexity 1 25 0 2124 107 0 3 chr1 228700078 228700369 -53493295 + AluSx SINE Alu 1 290 -22 2165 114 10 0 chr1 228700977 228701285 -53492379 + AluSp SINE Alu 3 313 0 302 360 27 0 chr1 228701567 228701678 -53491986 - L2 LINE L2 -978 2336 2223 327 113 42 0 chr1 228701868 228701939 -53491725 + CT-rich Low_complexity Low_complexity 1 74 0 33 66 0 0 chr1 228702121 228702182 -53491482 + AT_rich Low_complexity Low_complexity 1 61 0 225 0 0 0 chr1 228703433 228703458 -53490206 + (T)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr1 228703677 228703729 -53489935 + AT_rich Low_complexity Low_complexity 1 52 0 302 223 54 102 chr1 228703925 228704091 -53489573 + L1ME4a LINE L1 5964 6121 0 239 366 104 5 chr1 228705122 228705324 -53488340 - MIR SINE MIR -10 252 31 221 325 56 32 chr1 228705345 228705471 -53488193 + MER5A DNA MER1_type 1 129 -60 193 377 25 25 chr1 228705377 228705536 -53488128 - MER5A DNA MER1_type -22 167 9 * 211 307 88 69 chr1 228705694 228705884 -53487780 + L3 LINE CR1 642 840 -737 1697 147 180 14 chr1 228705884 228706251 -53487413 - MSTA LTR MaLR 0 428 1 211 307 88 69 chr1 228706251 228706334 -53487330 + L3 LINE CR1 840 920 -657 730 308 84 22 chr1 228706415 228706818 -53486846 + L3 LINE CR1 968 1395 -182 227 297 119 10 chr1 228706910 228707011 -53486653 + L2 LINE L2 3202 3313 0 207 167 0 0 chr1 228708787 228708823 -53484841 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr1 228709477 228709498 -53484166 + (TGG)n Simple_repeat Simple_repeat 1 21 0 2304 109 0 0 chr1 228710028 228710340 -53483324 + AluSx SINE Alu 1 312 0 680 295 46 31 chr1 228710717 228711141 -53482523 - MLT1G-int LTR MaLR -807 564 16 241 45 23 23 chr1 228711148 228711192 -53482472 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 526 160 53 10 chr1 228711204 228711334 -53482330 - MLT1G LTR MaLR 0 590 423 520 292 54 11 chr1 228711408 228711593 -53482071 - MLT1G LTR MaLR -300 290 98 891 123 0 0 chr1 228711596 228711718 -53481946 + AluSq/x SINE Alu 13 134 -179 1280 81 0 86 chr1 228711741 228711939 -53481725 + AluSc SINE Alu 103 283 -26 403 286 19 0 chr1 228711940 228712045 -53481619 - MLT1G LTR MaLR -460 107 1 278 25 0 25 chr1 228712864 228712904 -53480760 + (TG)n Simple_repeat Simple_repeat 2 40 0 557 211 92 40 chr1 228713589 228713741 -53479923 + MLT1J1 LTR MaLR 1 160 -290 1778 111 0 0 chr1 228714583 228714817 -53478847 + AluSx SINE Alu 1 234 -78 256 237 17 0 chr1 228714963 228715022 -53478642 + MER112 DNA MER1_type 9 68 -192 474 349 139 12 chr1 228716917 228717249 -53476415 + HAL1 LINE L1 575 948 -1559 574 301 29 12 chr1 228717346 228717519 -53476145 - MER97b DNA MER1_type? -876 177 2 648 173 39 31 chr1 228717792 228717919 -53475745 + FLAM_C SINE Alu 3 130 -13 376 278 128 26 chr1 228717980 228718207 -53475457 + HAL1 LINE L1 2258 2507 0 23 0 0 0 chr1 228718345 228718368 -53475296 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr1 228718466 228718521 -53475143 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr1 228718555 228718579 -53475085 + AT_rich Low_complexity Low_complexity 1 24 0 282 56 0 0 chr1 228720479 228720515 -53473149 + (TG)n Simple_repeat Simple_repeat 1 36 0 335 178 40 10 chr1 228722919 228723020 -53470644 + GA-rich Low_complexity Low_complexity 6 109 0 748 196 0 0 chr1 228723814 228723947 -53469717 - FLAM_C SINE Alu 0 133 1 219 295 147 54 chr1 228725623 228725752 -53467912 + L2 LINE L2 3132 3272 0 1470 212 77 32 chr1 228725771 228726166 -53467498 + MLT2B1 LTR ERVL 3 414 0 25 0 0 0 chr1 228726672 228726697 -53466967 + AT_rich Low_complexity Low_complexity 1 25 0 979 150 44 6 chr1 228726996 228727176 -53466488 + L1MC1 LINE L1 6146 6332 -1 4130 139 26 122 chr1 228728018 228728990 -53464674 + L1MA5 LINE L1 5267 6144 -156 355 333 65 7 chr1 228729622 228729760 -53463904 - MIR SINE MIR -92 170 25 379 331 83 18 chr1 228729950 228730119 -53463545 + MIR SINE MIR 58 237 -25 207 167 0 0 chr1 228730598 228730634 -53463030 + (CA)n Simple_repeat Simple_repeat 1 36 0 2267 108 0 0 chr1 228731856 228732161 -53461503 + AluSx SINE Alu 1 305 -7 680 295 46 31 chr1 228732538 228732962 -53460702 - MLT1G-int LTR MaLR -807 564 16 241 45 23 23 chr1 228732969 228733013 -53460651 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 526 160 53 10 chr1 228733025 228733155 -53460509 - MLT1G LTR MaLR 0 590 423 520 292 54 11 chr1 228733229 228733414 -53460250 - MLT1G LTR MaLR -300 290 98 891 123 0 0 chr1 228733417 228733539 -53460125 + AluSq/x SINE Alu 13 134 -179 1280 81 0 86 chr1 228733562 228733760 -53459904 + AluSc SINE Alu 103 283 -26 403 286 19 0 chr1 228733761 228733866 -53459798 - MLT1G LTR MaLR -460 107 1 260 26 0 26 chr1 228734689 228734727 -53458937 + (TG)n Simple_repeat Simple_repeat 2 38 0 557 211 92 40 chr1 228735412 228735564 -53458100 + MLT1J1 LTR MaLR 1 160 -290 2111 107 14 0 chr1 228736406 228736726 -53456938 + AluSx SINE Alu 1 324 0 260 369 69 0 chr1 228736967 228737127 -53456537 + L1MEc LINE L1 112 282 -6114 1025 286 59 15 chr1 228737308 228737783 -53455881 + L1M4 LINE L1 3400 3895 -2251 1025 242 33 7 chr1 228737808 228738110 -53455554 + L1M4 LINE L1 4812 5121 -1025 2650 222 52 16 chr1 228738172 228739001 -53454663 + MER97a DNA MER1_type? 57 812 -82 256 237 17 0 chr1 228740542 228740601 -53453063 + MER112 DNA MER1_type 9 68 -192 459 339 112 40 chr1 228742496 228742871 -53450793 + HAL1 LINE L1 575 976 -1531 499 289 0 74 chr1 228742925 228743115 -53450549 - MER97c DNA MER1_type? -913 177 2 648 173 39 31 chr1 228743420 228743547 -53450117 + FLAM_C SINE Alu 3 130 -13 388 273 128 26 chr1 228743608 228743835 -53449829 + HAL1 LINE L1 2258 2507 0 23 0 0 0 chr1 228743973 228743996 -53449668 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr1 228744094 228744149 -53449515 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr1 228744183 228744207 -53449457 + AT_rich Low_complexity Low_complexity 1 24 0 282 56 0 0 chr1 228746107 228746143 -53447521 + (TG)n Simple_repeat Simple_repeat 1 36 0 323 178 40 10 chr1 228748550 228748651 -53445013 + GA-rich Low_complexity Low_complexity 6 109 0 1415 3 25 0 chr1 228748990 228749306 -53444358 + (GGAA)n Simple_repeat Simple_repeat 1 324 0 29 0 0 0 chr1 228749577 228749606 -53444058 + AT_rich Low_complexity Low_complexity 1 29 0 216 284 55 64 chr1 228749856 228749965 -53443699 - L2 LINE L2 0 3313 3206 23 54 0 0 chr1 228750556 228750593 -53443071 + AT_rich Low_complexity Low_complexity 1 37 0 741 195 0 86 chr1 228750650 228750860 -53442804 - AluJo SINE Alu 0 312 121 483 321 115 68 chr1 228750862 228750909 -53442755 + L2 LINE L2 2486 2529 -743 318 26 0 0 chr1 228750909 228750948 -53442716 + (TG)n Simple_repeat Simple_repeat 2 40 0 483 321 115 68 chr1 228750948 228751632 -53442032 + L2 LINE L2 2529 3271 -1 369 293 24 54 chr1 228751954 228752144 -53441520 - MIR SINE MIR -62 146 14 329 365 7 22 chr1 228752619 228752756 -53440908 - L2 LINE L2 0 3272 3138 233 154 0 0 chr1 228752928 228752967 -53440697 + L2 LINE L2 3269 3307 -6 1994 132 4 0 chr1 228754335 228754654 -53439010 + AluSx SINE Alu 5 324 0 472 254 67 0 chr1 228755394 228755528 -53438136 - MIR SINE MIR 0 262 120 330 208 62 42 chr1 228757526 228757622 -53436042 - L2 LINE L2 0 3313 3216 276 154 0 0 chr1 228758455 228758507 -53435157 + CT-rich Low_complexity Low_complexity 1 52 0 1879 168 0 0 chr1 228758617 228758908 -53434756 + AluSx SINE Alu 3 293 -19 193 321 194 23 chr1 228759075 228759471 -53434193 - L2 LINE L2 -784 2530 2067 424 182 23 11 chr1 228760501 228760589 -53433075 + MLT1J1 LTR MaLR 71 159 -287 424 182 23 11 chr1 228761228 228761316 -53432348 + MLT1J1 LTR MaLR 71 159 -287 987 267 168 41 chr1 228761424 228761859 -53431805 - MLT1F1 LTR MaLR -2 565 76 1776 214 84 9 chr1 228762879 228763309 -53430355 + MLT1C LTR MaLR 6 467 0 190 286 16 0 chr1 228763374 228763500 -53430164 + (CCCCAG)n Simple_repeat Simple_repeat 4 131 0 3271 221 10 17 chr1 228763826 228764877 -53428787 + L1MB8 LINE L1 5034 6075 -103 353 166 80 26 chr1 228764882 228764972 -53428692 + L1MB8 LINE L1 6031 6131 -43 221 314 47 67 chr1 228766837 228767136 -53426528 + L2 LINE L2 2283 2575 -739 473 254 23 0 chr1 228767470 228767600 -53426064 - MLT1L LTR MaLR -9 606 474 228 111 0 0 chr1 228768486 228768522 -53425142 + (CA)n Simple_repeat Simple_repeat 2 37 0 720 215 6 31 chr1 228768524 228768687 -53424977 + MLT1A2 LTR MaLR 4 162 -212 243 250 0 0 chr1 228768692 228768776 -53424888 + CT-rich Low_complexity Low_complexity 1 84 0 913 191 64 0 chr1 228768818 228768991 -53424673 + MLT1A2 LTR MaLR 189 372 -2 474 65 0 0 chr1 228768994 228769056 -53424608 + (CA)n Simple_repeat Simple_repeat 2 63 0 2417 66 0 10 chr1 228769482 228769786 -53423878 + AluY SINE Alu 1 301 -10 213 372 11 11 chr1 228769845 228769939 -53423725 + MIR SINE MIR 23 116 -146 27 29 0 0 chr1 228771687 228771721 -53421943 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1 228772039 228772069 -53421595 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr1 228772629 228772679 -53420985 + AT_rich Low_complexity Low_complexity 1 50 0 252 328 83 15 chr1 228773429 228773633 -53420031 - L1MC4 LINE L1 -206 7836 7619 297 0 0 0 chr1 228774575 228774608 -53419056 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 80 0 0 chr1 228775119 228775144 -53418520 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 256 212 59 47 chr1 228775253 228775338 -53418326 + L2 LINE L2 3187 3272 0 36 62 0 0 chr1 228775748 228775812 -53417852 + AT_rich Low_complexity Low_complexity 1 64 0 26 50 0 0 chr1 228775877 228775917 -53417747 + AT_rich Low_complexity Low_complexity 1 40 0 523 302 74 0 chr1 228776939 228777181 -53416483 + MIR SINE MIR 3 262 0 391 299 0 39 chr1 228779311 228779438 -53414226 + L2 LINE L2 3189 3310 -3 1506 187 14 35 chr1 228779451 228779783 -53413881 + AluJb SINE Alu 1 326 0 450 298 69 18 chr1 228780261 228780479 -53413185 + ERVL LTR ERVL 5154 5382 -382 575 248 9 127 chr1 228780652 228780930 -53412734 + HAL1 LINE L1 1427 1660 -847 1761 166 3 20 chr1 228780930 228781231 -53412433 + AluJb SINE Alu 1 296 -16 575 248 9 127 chr1 228781231 228781291 -53412373 + HAL1 LINE L1 1660 1725 -782 781 272 99 24 chr1 228781889 228782304 -53411360 + MLT1C LTR MaLR 22 467 0 350 330 79 5 chr1 228782357 228782572 -53411092 + L1ME4a LINE L1 3256 3486 -2660 2726 7 0 0 chr1 228782605 228782905 -53410759 - AluY SINE Alu -11 300 1 306 308 196 9 chr1 228783209 228783423 -53410241 + L1ME4a LINE L1 3916 4169 -1977 805 160 63 14 chr1 228783425 228783590 -53410074 + MSTA LTR MaLR 1 202 -224 449 108 0 0 chr1 228783590 228783655 -53410009 - MLT2A2 LTR ERVL 0 453 389 2327 106 50 0 chr1 228783656 228784014 -53409650 - L1PA11 LINE L1 -4 6170 5795 2028 109 13 16 chr1 228784014 228784327 -53409337 + L1PA11 LINE L1 5467 5778 -390 1746 248 52 44 chr1 228784327 228784831 -53408833 - MLT2B3 LTR ERVL -46 508 1 1393 135 22 0 chr1 228784832 228785054 -53408610 + MSTA LTR MaLR 202 428 0 454 311 105 36 chr1 228785275 228785808 -53407856 + L1ME4a LINE L1 4489 5058 -1088 354 289 89 68 chr1 228785847 228785996 -53407668 + L1ME4a LINE L1 5506 5651 -470 539 117 0 0 chr1 228785996 228786073 -53407591 + MADE1 DNA Mariner 4 80 0 354 289 89 68 chr1 228786073 228786243 -53407421 + L1ME4a LINE L1 5651 5829 -292 2644 205 36 34 chr1 228786247 228786916 -53406748 + L1MC3 LINE L1 7114 7783 -2 2024 109 0 18 chr1 228786982 228787301 -53406363 + AluSc SINE Alu 1 314 0 1719 83 16 16 chr1 228787494 228787736 -53405928 + THE1C LTR MaLR 1 242 -133 320 143 32 0 chr1 228787795 228787858 -53405806 - LTR50 LTR ERVL -25 770 706 339 226 16 0 chr1 228788156 228788218 -53405446 + MER94 DNA DNA 72 134 0 1377 130 4 80 chr1 228789137 228789347 -53404317 - L1PA16 LINE L1 -1 6165 5982 2078 110 7 10 chr1 228789347 228789646 -53404018 - AluSg SINE Alu -12 298 1 1377 130 4 80 chr1 228789646 228789715 -53403949 - L1PA16 LINE L1 -184 5982 5909 2291 56 3 63 chr1 228789998 228790317 -53403347 + AluY SINE Alu 1 300 -11 439 145 0 0 chr1 228792033 228792102 -53401562 + MER103 DNA DNA 35 103 -63 534 211 44 9 chr1 228793449 228793563 -53400101 - L2 LINE L2 -4 3309 3192 246 156 0 0 chr1 228794875 228794920 -53398744 + (TG)n Simple_repeat Simple_repeat 1 45 0 612 284 87 89 chr1 228795191 228795380 -53398284 - LTR16A LTR ERVL 0 450 262 14851 154 30 22 chr1 228795380 228795972 -53397692 - Tigger2 DNA MER2_type -1 2717 2131 2169 82 0 36 chr1 228795972 228796294 -53397370 + AluY SINE Alu 1 311 0 14851 154 30 22 chr1 228796294 228798396 -53395268 - Tigger2 DNA MER2_type -587 2131 1 612 284 87 89 chr1 228798396 228798657 -53395007 - LTR16A LTR ERVL -188 262 1 4626 66 12 2 chr1 228798766 228799369 -53394295 - L1PA7 LINE L1 -2 6152 5544 183 432 64 8 chr1 228799698 228799823 -53393841 - MIR3 SINE MIR -52 156 25 204 206 16 32 chr1 228800626 228800689 -53392975 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 380 274 68 8 chr1 228800709 228800826 -53392838 - MIR SINE MIR -109 153 30 331 136 11 11 chr1 228801017 228801105 -53392559 + (TA)n Simple_repeat Simple_repeat 2 89 0 369 0 0 0 chr1 228801105 228801146 -53392518 + (GA)n Simple_repeat Simple_repeat 2 42 0 2074 116 4 0 chr1 228801147 228801423 -53392241 - AluSx SINE Alu -35 277 1 208 336 46 69 chr1 228801865 228802082 -53391582 - L2 LINE L2 -464 2850 2639 19695 199 33 8 chr1 228802324 228806645 -53387019 - L1PA13 LINE L1 -803 5994 1479 682 91 109 9 chr1 228806645 228806755 -53386909 - L1PB1 LINE L1 -1 6150 6030 19695 199 33 8 chr1 228806755 228808266 -53385398 - L1PA13 LINE L1 -5318 1479 7 7990 145 14 246 chr1 228808260 228811349 -53382315 - L1M2 LINE L1 -4655 2513 1 * 421 334 61 12 chr1 228812493 228812516 -53381148 - MIR SINE MIR -15 247 227 1511 176 94 24 chr1 228812516 228812857 -53380807 - MLT1A1 LTR MaLR 0 365 1 421 334 61 12 chr1 228812857 228813067 -53380597 - MIR SINE MIR -35 227 3 341 269 163 21 chr1 228813364 228813505 -53380159 - MIR3 SINE MIR -2 206 46 332 260 110 8 chr1 228813813 228813940 -53379724 - MER117 DNA MER1_type -47 150 11 186 208 0 0 chr1 228817377 228817430 -53376234 + A-rich Low_complexity Low_complexity 1 53 0 517 138 9 9 chr1 228818412 228818521 -53375143 + (TA)n Simple_repeat Simple_repeat 1 109 0 211 172 17 17 chr1 228819156 228819214 -53374450 + A-rich Low_complexity Low_complexity 2 59 0 678 188 12 56 chr1 228819238 228819398 -53374266 - MLT1F1 LTR MaLR -8 559 407 485 309 133 24 chr1 228819474 228819785 -53373879 - MLT1G1 LTR MaLR -286 304 1 1007 271 92 42 chr1 228820421 228821323 -53372341 + L1MCa LINE L1 1190 2334 -4273 276 251 145 57 chr1 228821392 228821675 -53371989 + L1MCa LINE L1 2919 3226 -3200 800 236 20 15 chr1 228821677 228821872 -53371792 - MLT1D LTR MaLR -309 196 1 1210 257 88 32 chr1 228821872 228822251 -53371413 + L1M4 LINE L1 4602 5021 -1125 600 262 161 62 chr1 228822251 228822667 -53370997 - LTR16A1 LTR ERVL 0 457 1 1210 257 88 32 chr1 228822667 228822824 -53370840 + L1M4 LINE L1 5021 5168 -978 275 259 59 0 chr1 228822982 228823067 -53370597 + MIR SINE MIR 167 256 -6 674 314 78 78 chr1 228823510 228823998 -53369666 - L2 LINE L2 -1 3312 2825 503 332 199 12 chr1 228824023 228824430 -53369234 - L2 LINE L2 -2104 1210 728 510 337 32 32 chr1 228824988 228825365 -53368299 - HAL1b LINE L1 -706 642 266 22 0 0 0 chr1 228825366 228825388 -53368276 + AT_rich Low_complexity Low_complexity 1 22 0 4072 181 44 37 chr1 228825432 228825940 -53367724 - L1MB4 LINE L1 -2 6178 5675 1565 152 43 14 chr1 228825940 228826216 -53367448 - AluJo SINE Alu 0 312 29 4072 181 44 37 chr1 228826216 228827382 -53366282 - L1MB4 LINE L1 -505 5675 4489 222 274 0 0 chr1 228828861 228828923 -53364741 + (TATG)n Simple_repeat Simple_repeat 3 64 0 189 366 42 0 chr1 228829669 228829740 -53363924 + MIR SINE MIR 30 103 -105 38 39 0 0 chr1 228830390 228830442 -53363222 + AT_rich Low_complexity Low_complexity 1 52 0 401 200 34 6 chr1 228831409 228831515 -53362149 + AluJb SINE Alu 22 108 -194 691 147 17 0 chr1 228833451 228833567 -53360097 + AluJb SINE Alu 1 118 -194 180 0 0 0 chr1 228833568 228833588 -53360076 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 21 71 0 0 chr1 228835421 228835463 -53358201 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr1 228837258 228837298 -53356366 + AT_rich Low_complexity Low_complexity 1 40 0 3928 195 43 12 chr1 228838054 228838910 -53354754 + L1MA9 LINE L1 5392 6274 -38 39 0 0 0 chr1 228838910 228838949 -53354715 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr1 228839403 228839439 -53354225 + AT_rich Low_complexity Low_complexity 1 36 0 622 294 25 10 chr1 228839450 228839654 -53354010 + HAL1b LINE L1 249 455 -893 281 57 43 57 chr1 228839799 228839869 -53353795 + (TATAA)n Simple_repeat Simple_repeat 2 70 0 595 335 29 12 chr1 228840361 228840606 -53353058 - MIR SINE MIR 0 262 14 201 370 60 0 chr1 228840980 228841080 -53352584 + L2 LINE L2 1522 1627 -1687 342 107 0 0 chr1 228841176 228841232 -53352432 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 225 0 0 0 chr1 228841252 228841277 -53352387 + (TC)n Simple_repeat Simple_repeat 2 26 0 1239 194 0 5 chr1 228841297 228841513 -53352151 - AluJo SINE Alu -27 285 71 239 147 0 0 chr1 228841515 228841549 -53352115 - Alu SINE Alu -31 102 69 182 276 108 103 chr1 228841555 228841740 -53351924 + L2 LINE L2 1758 1943 -1371 14118 201 27 19 chr1 228841796 228845627 -53348037 - L1PB2 LINE L1 -1 6866 3028 2342 90 53 28 chr1 228845627 228845982 -53347682 + THE1B LTR MaLR 1 364 0 14118 201 27 19 chr1 228845982 228847434 -53346230 - L1PB2 LINE L1 -3839 3028 1588 448 363 160 11 chr1 228847436 228847717 -53345947 + L2 LINE L2 2266 2588 -726 25 31 0 0 chr1 228847829 228847861 -53345803 + AT_rich Low_complexity Low_complexity 1 32 0 215 222 22 0 chr1 228848274 228848319 -53345345 - MIR SINE MIR -216 46 1 645 268 182 35 chr1 228848486 228848833 -53344831 - MLT1I LTR MaLR -1 408 11 450 180 3 0 chr1 228848833 228848917 -53344747 + MLT1E LTR MaLR 396 532 -61 2056 176 31 64 chr1 228849973 228850456 -53343208 + MLT1C LTR MaLR 1 467 0 484 215 68 31 chr1 228851471 228851634 -53342030 + MIR SINE MIR 76 244 -18 697 229 51 85 chr1 228851889 228852125 -53341539 + MIR SINE MIR 12 239 -23 937 187 0 0 chr1 228852264 228852430 -53341234 + FRAM SINE Alu 1 166 0 738 316 112 28 chr1 228852755 228853182 -53340482 - L2 LINE L2 -6 3307 2845 594 263 115 5 chr1 228853314 228853523 -53340141 + MLT1J1 LTR MaLR 215 446 0 237 303 105 0 chr1 228853524 228853600 -53340064 - L2 LINE L2 -455 2859 2776 301 300 10 30 chr1 228853878 228853978 -53339686 + MIR SINE MIR 40 137 -125 25 51 0 0 chr1 228854092 228854131 -53339533 + AT_rich Low_complexity Low_complexity 1 39 0 227 398 0 20 chr1 228854868 228854966 -53338698 + MIR SINE MIR 42 137 -71 333 47 0 0 chr1 228854994 228855037 -53338627 + (CATA)n Simple_repeat Simple_repeat 2 44 0 549 309 98 8 chr1 228855111 228855347 -53338317 + MIR SINE MIR 3 259 -3 1853 241 90 37 chr1 228856009 228856578 -53337086 + MLT1E2 LTR MaLR 1 599 -27 798 201 184 124 chr1 228856584 228856986 -53336678 - MLT1E LTR MaLR -167 426 1 894 236 38 113 chr1 228856986 228857430 -53336234 - MLT1E-int LTR MaLR 0 1371 961 381 141 0 0 chr1 228857560 228857631 -53336033 + (TC)n Simple_repeat Simple_repeat 2 72 0 338 308 15 15 chr1 228857633 228857763 -53335901 - MLT1E-int LTR MaLR -497 874 745 2101 138 0 25 chr1 228857788 228858107 -53335557 + AluSx SINE Alu 2 312 0 1350 233 24 74 chr1 228858259 228858816 -53334848 - MLT1E-int LTR MaLR -709 662 16 2952 145 112 46 chr1 228858816 228859442 -53334222 + MER39 LTR ERV1 1 667 -40 1501 238 77 68 chr1 228859470 228860055 -53333609 - MLT1E LTR MaLR -3 590 1 250 264 35 35 chr1 228861293 228861380 -53332284 + L2 LINE L2 3223 3309 -4 617 296 161 5 chr1 228862013 228862236 -53331428 - MIR SINE MIR -4 258 1 2302 192 18 75 chr1 228863631 228864230 -53329434 - L1MA9 LINE L1 -990 5156 4592 * 3911 160 33 135 chr1 228864224 228864982 -53328682 + L1MA9 LINE L1 5156 5731 -581 2107 121 0 0 chr1 228864982 228865271 -53328393 - AluY SINE Alu -18 293 5 3911 160 33 135 chr1 228865271 228865794 -53327870 + L1MA9 LINE L1 5731 6306 -6 2553 88 11 37 chr1 228865827 228866201 -53327463 + THE1B LTR MaLR 1 364 0 1669 142 91 51 chr1 228866658 228867031 -53326633 + MLT1B LTR MaLR 1 388 -2 193 310 18 88 chr1 228867845 228867958 -53325706 - MER5A DNA MER1_type -84 105 1 2123 108 7 0 chr1 228868439 228868746 -53324918 + AluSg SINE Alu 1 309 0 24 67 0 0 chr1 228870131 228870176 -53323488 + AT_rich Low_complexity Low_complexity 1 45 0 1655 179 0 39 chr1 228870641 228870948 -53322716 + AluJb SINE Alu 6 300 -12 255 326 33 11 chr1 228871261 228871353 -53322311 - L2 LINE L2 0 3313 3220 6730 43 2 1 chr1 228875089 228875950 -53317714 + L1P LINE L1 2442 3303 -2843 2195 187 21 19 chr1 228876027 228876454 -53317210 - MSTA LTR MaLR 0 428 1 386 282 87 5 chr1 228877589 228877795 -53315869 - L1M4 LINE L1 -994 5152 4930 298 266 151 47 chr1 228878121 228878313 -53315351 - L2 LINE L2 0 3313 3102 21 36 0 0 chr1 228878991 228879019 -53314645 + AT_rich Low_complexity Low_complexity 1 28 0 270 264 43 71 chr1 228879458 228879598 -53314066 - MIR SINE MIR -45 217 82 330 181 32 3 chr1 228882723 228882835 -53310829 + MIR SINE MIR 111 262 0 21 0 0 0 chr1 228883347 228883368 -53310296 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr1 228884814 228884849 -53308815 + AT_rich Low_complexity Low_complexity 1 35 0 2174 67 0 54 chr1 228886499 228886833 -53306831 - AluY SINE Alu 0 318 1 217 250 59 15 chr1 228888182 228888250 -53305414 - L2 LINE L2 -2 3311 3241 28 0 0 0 chr1 228889322 228889350 -53304314 + AT_rich Low_complexity Low_complexity 1 28 0 561 268 210 26 chr1 228889449 228889830 -53303834 + LTR37B LTR ERV1 5 455 -13 734 304 185 38 chr1 228889842 228890453 -53303211 + L2 LINE L2 2405 3140 -173 258 56 0 0 chr1 228890453 228890489 -53303175 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 734 304 185 38 chr1 228890489 228890580 -53303084 + L2 LINE L2 3140 3216 -97 282 29 0 0 chr1 228892876 228892911 -53300753 + (TG)n Simple_repeat Simple_repeat 2 36 0 29 47 0 0 chr1 228893726 228893769 -53299895 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr1 228893893 228893913 -53299751 + (CA)n Simple_repeat Simple_repeat 2 21 0 190 225 25 0 chr1 228895243 228895323 -53298341 + (TA)n Simple_repeat Simple_repeat 2 83 0 938 172 304 0 chr1 228895349 228895553 -53298111 - AluJo SINE Alu -46 266 1 970 296 164 29 chr1 228895924 228896667 -53296997 - L2 LINE L2 0 3313 2459 352 261 131 79 chr1 228896672 228897001 -53296663 + HAL1 LINE L1 2156 2501 -6 25 51 0 0 chr1 228897018 228897057 -53296607 + AT_rich Low_complexity Low_complexity 1 39 0 378 0 0 0 chr1 228898750 228898792 -53294872 + (CA)n Simple_repeat Simple_repeat 2 43 0 190 293 49 24 chr1 228900438 228900520 -53293144 + MIR SINE MIR 100 183 -79 506 294 54 22 chr1 228900634 228900818 -53292846 + MIR SINE MIR 35 224 -38 185 139 0 70 chr1 228900800 228900843 -53292821 - L3b LINE CR1 -166 1417 1378 * 198 233 23 0 chr1 228901728 228901771 -53291893 + L2 LINE L2 3256 3299 -14 3978 127 16 11 chr1 228902835 228903467 -53290197 + MER41B LTR ERV1 1 635 0 386 197 28 0 chr1 228904401 228904472 -53289192 - MIR SINE MIR -169 93 21 725 250 155 5 chr1 228905443 228905643 -53288021 - MIR SINE MIR -3 259 30 1019 186 13 53 chr1 228905644 228905870 -53287794 - MER20 DNA MER1_type -2 217 1 640 194 133 33 chr1 228905882 228906093 -53287571 + MER106A DNA MER1_type 5 236 0 189 0 0 0 chr1 228906528 228906549 -53287115 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 193 253 84 53 chr1 228907535 228907630 -53286034 + MER5A DNA MER1_type 92 189 0 41 21 0 0 chr1 228908549 228908597 -53285067 + AT_rich Low_complexity Low_complexity 1 48 0 531 236 16 16 chr1 228910136 228910263 -53283401 - L2 LINE L2 -659 2655 2529 290 285 171 0 chr1 228910261 228910384 -53283280 + L2 LINE L2 2642 2785 -529 * 1608 166 45 10 chr1 228910394 228910553 -53283111 - AluJb SINE Alu -13 299 124 369 0 0 0 chr1 228910553 228910594 -53283070 + (TG)n Simple_repeat Simple_repeat 2 42 0 1608 166 45 10 chr1 228910594 228910723 -53282941 - AluJb SINE Alu -188 124 1 351 337 50 5 chr1 228910854 228911144 -53282520 + L2 LINE L2 2800 3152 -161 7953 143 19 2 chr1 228911155 228913372 -53280292 - L1PA13 LINE L1 -39 6124 3877 1548 207 9 9 chr1 228913372 228913689 -53279975 + L1PB4 LINE L1 5826 6154 -2 2128 104 24 3 chr1 228913936 228914224 -53279440 - AluSc SINE Alu -15 294 1 491 215 159 12 chr1 228914478 228914641 -53279023 + LTR41 LTR ERVL 1 187 -586 468 243 77 81 chr1 228915047 228915306 -53278358 + LTR41 LTR ERVL 510 767 -6 10967 218 54 26 chr1 228915334 228916118 -53277546 + L1MB2 LINE L1 2930 3691 -3899 2259 105 0 0 chr1 228916118 228916422 -53277242 + AluSc SINE Alu 1 304 -5 10967 218 54 26 chr1 228916422 228916926 -53276738 + L1MB2 LINE L1 3691 4180 -3410 1992 143 3 3 chr1 228916926 228917219 -53276445 - AluSx SINE Alu -19 293 1 10967 218 54 26 chr1 228917219 228918709 -53274955 + L1MB2 LINE L1 4180 5627 -1963 1569 189 17 20 chr1 228918709 228919011 -53274653 + AluJb SINE Alu 1 301 -11 10967 218 54 26 chr1 228919011 228920404 -53273260 + L1MB2 LINE L1 5627 7270 -320 399 21 0 0 chr1 228920404 228920452 -53273212 + (CA)n Simple_repeat Simple_repeat 2 49 0 10967 218 54 26 chr1 228920452 228920783 -53272881 + L1MB2 LINE L1 7270 7590 0 313 251 127 93 chr1 228920854 228921357 -53272307 - L1MEd LINE L1 -4869 1250 731 570 29 0 0 chr1 228921948 228922016 -53271648 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 224 228 211 0 chr1 228922119 228922176 -53271488 - MIR SINE MIR -73 135 67 203 242 32 0 chr1 228922411 228922473 -53271191 + (TA)n Simple_repeat Simple_repeat 2 65 0 269 330 34 0 chr1 228922480 228922568 -53271096 - MIR SINE MIR -4 258 168 2183 151 58 15 chr1 228922963 228923373 -53270291 - MSTA LTR MaLR 0 428 1 496 269 124 25 chr1 228923825 228924026 -53269638 - MIR SINE MIR -12 250 30 938 264 35 52 chr1 228924186 228924531 -53269133 - L2 LINE L2 -1 3312 2974 301 378 72 29 chr1 228924548 228924855 -53268809 + L3 LINE CR1 651 970 -607 225 0 0 0 chr1 228925512 228925537 -53268127 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1589 126 58 51 chr1 228925614 228925907 -53267757 + AluJo SINE Alu 9 303 -9 758 280 6 0 chr1 228926308 228926490 -53267174 + MIR SINE MIR 73 255 -7 21 36 0 0 chr1 228926502 228926530 -53267134 + AT_rich Low_complexity Low_complexity 1 28 0 204 143 0 0 chr1 228926563 228926605 -53267059 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 185 0 0 39 chr1 228926930 228926956 -53266708 + (TAA)n Simple_repeat Simple_repeat 2 26 0 570 305 67 16 chr1 228926968 228927153 -53266511 - MIR SINE MIR -26 236 46 1463 146 105 0 chr1 228928564 228928803 -53264861 - L1PA12 LINE L1 -5795 1786 1523 * 1806 89 0 0 chr1 228928800 228929047 -53264617 + L1PA12 LINE L1 1758 2004 -5577 1727 287 55 51 chr1 228929050 228929816 -53263848 + L1PA13 LINE L1 342 1110 -5677 5235 190 7 22 chr1 228929828 228931329 -53262335 + L1PA13 LINE L1 1397 2877 -3920 14701 180 17 2 chr1 228931331 228935136 -53258528 + L1PA13 LINE L1 3001 6810 -4 21 0 0 0 chr1 228935894 228935915 -53257749 + AT_rich Low_complexity Low_complexity 1 21 0 573 269 96 25 chr1 228936196 228936599 -53257065 - L1MEc LINE L1 -3698 2517 2120 1970 123 41 0 chr1 228936738 228936858 -53256806 + AluSx SINE Alu 1 115 -197 315 0 0 0 chr1 228936858 228936893 -53256771 + (CA)n Simple_repeat Simple_repeat 2 36 0 1970 123 41 0 chr1 228936893 228937064 -53256600 + AluSx SINE Alu 115 304 -8 488 271 62 52 chr1 228937141 228937543 -53256121 - L1MEc LINE L1 -4579 1817 1412 230 244 26 13 chr1 228937551 228937629 -53256035 + L1MEc LINE L1 1315 1393 -5003 488 321 86 14 chr1 228938674 228938883 -53254781 - MIR SINE MIR -1 261 38 288 388 31 12 chr1 228938923 228939083 -53254581 + L2 LINE L2 2612 2774 -540 725 295 25 16 chr1 228940187 228940431 -53253233 + MIR SINE MIR 2 247 -15 195 277 91 107 chr1 228940492 228940867 -53252797 - L2 LINE L2 -1198 2116 1748 4662 124 18 43 chr1 228940867 228941336 -53252328 + Tigger2 DNA MER2_type 298 777 -1941 2212 103 139 34 chr1 228941336 228941510 -53252154 + MSTA LTR MaLR 1 155 -273 2141 129 0 29 chr1 228941510 228941821 -53251843 + AluSx SINE Alu 2 303 -9 2212 103 139 34 chr1 228941821 228942033 -53251631 + MSTA LTR MaLR 155 428 0 192 77 0 0 chr1 228942043 228942069 -53251595 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 4662 124 18 43 chr1 228942069 228942819 -53250845 + Tigger2 DNA MER2_type 786 1523 -1195 290 284 15 0 chr1 228942816 228942883 -53250781 + Tigger2 DNA MER2_type 2640 2707 -11 * 206 339 15 0 chr1 228943123 228943188 -53250476 - L2 LINE L2 -217 3055 2990 21 36 0 0 chr1 228944896 228944924 -53248740 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 228945056 228945082 -53248582 + AT_rich Low_complexity Low_complexity 1 26 0 1050 329 97 17 chr1 228947217 228947815 -53245849 + L2 LINE L2 2292 2937 -377 3260 46 2 2 chr1 228947842 228948254 -53245410 + L1PA8 LINE L1 5760 6171 -1 543 251 200 5 chr1 228948518 228948713 -53244951 + MIR SINE MIR 17 249 -13 215 308 47 75 chr1 228950170 228950277 -53243387 + L2 LINE L2 3168 3271 -1 1815 323 42 9 chr1 228951052 228951603 -53242061 - HERV16 LTR ERVL -1966 3030 2462 2251 274 170 22 chr1 228951603 228952678 -53240986 + L2 LINE L2 1437 2670 -644 401 221 0 0 chr1 228952678 228952755 -53240909 - AluJ/FRAM SINE Alu -8 294 218 298 271 53 43 chr1 228952758 228952946 -53240718 + L2 LINE L2 2698 2887 -427 239 219 0 41 chr1 228952972 228953045 -53240619 + L1MC4 LINE L1 6634 6703 -1339 437 176 49 0 chr1 228953057 228953199 -53240465 + (TA)n Simple_repeat Simple_repeat 1 149 0 200 40 0 0 chr1 228953199 228953224 -53240440 + (TG)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr1 228953224 228953244 -53240420 + (TA)n Simple_repeat Simple_repeat 1 20 0 534 278 122 44 chr1 228953273 228953568 -53240096 + L2 LINE L2 2996 3313 0 367 290 140 15 chr1 228953894 228954229 -53239435 + L1M4 LINE L1 4930 5306 -840 2176 187 21 19 chr1 228955235 228955662 -53238002 + MSTA LTR MaLR 1 428 0 9830 45 0 2 chr1 228955739 228956994 -53236670 - L1PA4 LINE L1 -2843 3303 2051 17082 35 1 0 chr1 228956994 228959832 -53233832 + L1PA4 LINE L1 3316 6155 0 239 179 36 0 chr1 228959945 228960001 -53233663 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr1 228960353 228960374 -53233290 + AT_rich Low_complexity Low_complexity 1 21 0 226 234 47 16 chr1 228960889 228960953 -53232711 + MLT1K LTR MaLR 523 588 0 291 238 36 48 chr1 228961561 228961645 -53232019 + MIR3 SINE MIR 126 208 0 278 191 0 0 chr1 228962046 228962093 -53231571 - Alu SINE Alu -6 296 250 1407 296 12 17 chr1 228962150 228962566 -53231098 + L1ME1 LINE L1 215 628 -5768 705 185 49 12 chr1 228962583 228962745 -53230919 + L1ME1 LINE L1 762 929 -5467 798 180 93 6 chr1 228962932 228963104 -53230560 - L1MD3 LINE L1 -41 7954 7768 1600 263 78 15 chr1 228963115 228963909 -53229755 + L1ME1 LINE L1 1026 1869 -4527 582 206 15 0 chr1 228963953 228964084 -53229580 + L1ME LINE L1 4867 4999 -1147 1444 200 6 3 chr1 228964515 228964802 -53228862 + L1ME LINE L1 5468 5753 -398 274 349 9 0 chr1 228964781 228964887 -53228777 - L1MEc LINE L1 -6120 276 170 * 38 89 0 0 chr1 228964889 228964990 -53228674 + AT_rich Low_complexity Low_complexity 1 101 0 1995 262 103 50 chr1 228965019 228965419 -53228245 + L1ME1 LINE L1 1976 2353 -3862 2149 117 25 22 chr1 228965419 228965787 -53227877 + THE1C LTR MaLR 3 371 -4 1995 262 103 50 chr1 228965787 228966507 -53227157 + L1ME1 LINE L1 2353 3183 -3032 2140 132 0 3 chr1 228966507 228966818 -53226846 + AluSq SINE Alu 1 310 -3 1995 262 103 50 chr1 228966818 228967377 -53226287 + L1ME1 LINE L1 3183 3711 -2504 5378 143 5 0 chr1 228967389 228968209 -53225455 + Tigger1 DNA MER2_type 1595 2418 0 3342 224 49 18 chr1 228968209 228969777 -53223887 + L1ME1 LINE L1 4583 6199 -36 1597 243 16 24 chr1 228969973 228970356 -53223308 - MER82 DNA MER2_type 0 653 274 21 57 0 0 chr1 228970525 228970560 -53223104 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 228970585 228970609 -53223055 + AT_rich Low_complexity Low_complexity 1 24 0 433 331 17 17 chr1 228970628 228970806 -53222858 - MIR SINE MIR -73 189 12 327 216 122 0 chr1 228971187 228971261 -53222403 - MER82 DNA MER2_type -23 630 548 1219 156 58 14 chr1 228972979 228973255 -53220409 - L1MB8 LINE L1 -1 6988 6701 531 83 0 0 chr1 228973260 228973332 -53220332 - Alu SINE Alu -16 296 225 4364 222 29 8 chr1 228973342 228975055 -53218609 - L1MB8 LINE L1 -304 6691 4940 4645 257 63 18 chr1 228975056 228976568 -53217096 - L1MB8 LINE L1 -2199 4758 3146 2030 122 14 10 chr1 228976568 228976864 -53216800 + AluSg SINE Alu 1 297 -13 4645 257 63 18 chr1 228976864 228977163 -53216501 - L1MB8 LINE L1 -3811 3146 2862 1142 274 78 16 chr1 228977166 228977487 -53216177 - L1MB8 LINE L1 -6509 350 10 1871 169 3 0 chr1 228977781 228978071 -53215593 + AluSx SINE Alu 1 291 -21 1093 263 134 63 chr1 228978513 228979109 -53214555 + L1MCa LINE L1 3 602 -5443 779 121 0 23 chr1 228981006 228981138 -53212526 + MER39 LTR ERV1 510 638 -69 180 254 16 48 chr1 228981188 228981251 -53212413 - MER5C DNA MER1_type -246 78 18 23 33 0 0 chr1 228981353 228981383 -53212281 + AT_rich Low_complexity Low_complexity 1 30 0 3020 96 7 0 chr1 228982034 228982461 -53211203 - L1PA13 LINE L1 0 6163 5734 30 0 0 0 chr1 228983114 228983144 -53210520 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr1 228983301 228983346 -53210318 + AT_rich Low_complexity Low_complexity 1 45 0 3681 254 63 15 chr1 228983641 228984260 -53209404 + L1MDa LINE L1 34 755 -5788 3064 88 49 0 chr1 228984260 228984692 -53208972 - MLT2A2 LTR ERVL 0 453 1 3681 254 63 15 chr1 228984692 228985133 -53208531 + L1MDa LINE L1 755 1173 -5370 519 226 49 55 chr1 228985128 228985292 -53208372 + L1MDa LINE L1 1481 1643 -4897 * 272 207 0 12 chr1 228985359 228985441 -53208223 + GA-rich Low_complexity Low_complexity 2 82 0 2051 217 92 38 chr1 228985448 228985961 -53207703 + L1MDa LINE L1 1635 2194 -4346 4327 118 12 6 chr1 228985961 228986645 -53207019 - L1MA3 LINE L1 0 6305 5618 2051 217 92 38 chr1 228986645 228986798 -53206866 + L1MDa LINE L1 2194 2337 -4203 22 0 0 0 chr1 228987306 228987328 -53206336 + AT_rich Low_complexity Low_complexity 1 22 0 250 342 18 36 chr1 228988287 228988398 -53205266 + L3 LINE CR1 768 876 -701 399 349 166 32 chr1 228988802 228989295 -53204369 + L3 LINE CR1 879 1437 -140 206 399 75 25 chr1 228990166 228990447 -53203217 - L2 LINE L2 -163 3109 2815 3024 111 50 44 chr1 228991032 228991296 -53202368 + MER4B LTR ERV1 1 262 -517 2181 89 3 10 chr1 228991296 228991588 -53202076 + AluY SINE Alu 1 290 -21 3024 111 50 44 chr1 228991588 228991920 -53201744 + MER4B LTR ERV1 262 779 0 309 26 0 0 chr1 228992153 228992191 -53201473 + (TG)n Simple_repeat Simple_repeat 1 38 0 1544 209 7 11 chr1 228992519 228992806 -53200858 + AluJo SINE Alu 1 286 -26 360 164 0 0 chr1 228992806 228992873 -53200791 + GA-rich Low_complexity Low_complexity 1 67 0 24 32 0 0 chr1 228992994 228993025 -53200639 + AT_rich Low_complexity Low_complexity 1 31 0 38 81 0 0 chr1 228993630 228993717 -53199947 + AT_rich Low_complexity Low_complexity 1 87 0 447 281 152 29 chr1 228994753 228994963 -53198701 - MIR SINE MIR -7 255 20 186 43 0 0 chr1 228995593 228995616 -53198048 + (T)n Simple_repeat Simple_repeat 1 23 0 587 298 98 49 chr1 228996234 228996519 -53197145 + MLT1K LTR MaLR 127 425 -163 328 269 41 71 chr1 228996542 228996739 -53196925 + MLT1K LTR MaLR 395 585 -3 194 88 0 29 chr1 228997308 228997342 -53196322 + (TC)n Simple_repeat Simple_repeat 2 34 0 363 60 0 0 chr1 228997354 228997404 -53196260 + (GA)n Simple_repeat Simple_repeat 1 50 0 764 319 65 10 chr1 228997712 228998022 -53195642 + MLT1I LTR MaLR 83 409 0 564 323 34 14 chr1 228998346 228998594 -53195070 + MIR SINE MIR 1 262 0 215 305 105 21 chr1 228998652 228998747 -53194917 - MER91C DNA MER1_type -23 117 15 1713 232 20 0 chr1 228998987 228999345 -53194319 + MLT1A1 LTR MaLR 1 365 0 721 275 64 34 chr1 228999834 229000070 -53193594 + MIR SINE MIR 4 246 -16 309 283 275 7 chr1 229000123 229000261 -53193403 - MIR SINE MIR -2 260 86 342 175 0 0 chr1 229000530 229000610 -53193054 + (CA)n Simple_repeat Simple_repeat 2 81 0 474 51 0 0 chr1 229001006 229001065 -53192599 - Alu SINE Alu -13 298 240 541 288 92 0 chr1 229001204 229001388 -53192276 + MIR SINE MIR 52 252 -10 2281 102 0 3 chr1 229001417 229001720 -53191944 - AluSc SINE Alu -7 302 1 190 352 22 0 chr1 229002343 229002434 -53191230 + L2 LINE L2 2696 2788 -526 312 329 118 12 chr1 229003150 229003311 -53190353 + MIR SINE MIR 11 188 -74 239 54 27 0 chr1 229003370 229003407 -53190257 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 211 282 58 10 chr1 229003572 229003675 -53189989 + L2 LINE L2 1365 1472 -1842 3165 250 82 22 chr1 229003840 229005171 -53188493 + L1ME3 LINE L1 2361 3771 -2375 1205 218 62 61 chr1 229005194 229005583 -53188081 + MLT2B1 LTR ERVL 1 356 -58 345 174 0 0 chr1 229005611 229005680 -53187984 + (TG)n Simple_repeat Simple_repeat 2 70 0 238 127 0 73 chr1 229005681 229005736 -53187928 + MLT2B1 LTR ERVL 347 397 0 3216 251 57 35 chr1 229005736 229007112 -53186552 + L1ME3 LINE L1 3791 5197 -949 5404 201 2 19 chr1 229007130 229007748 -53185916 + L1PB4 LINE L1 10 608 -6241 2333 153 33 26 chr1 229007748 229008172 -53185492 + MSTA LTR MaLR 2 428 0 5404 201 2 19 chr1 229008172 229008521 -53185143 + L1PB4 LINE L1 608 961 -5888 5200 196 17 21 chr1 229008519 229009915 -53183749 + L1PB4 LINE L1 4784 6179 -680 * 180 0 0 0 chr1 229009934 229009954 -53183710 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6386 71 5 2 chr1 229009957 229010799 -53182865 - L1PA8 LINE L1 -13 6159 5316 4274 118 22 4 chr1 229010781 229011462 -53182202 - L1P3 LINE L1 -3368 3093 2401 * 695 115 10 0 chr1 229011462 229011558 -53182106 - L1P3 LINE L1 -6355 106 10 3458 191 18 1 chr1 229011567 229012236 -53181428 + L1PB4 LINE L1 6163 6842 -17 1441 284 34 18 chr1 229012399 229012966 -53180698 + L1ME3 LINE L1 5322 5897 -265 4299 274 58 70 chr1 229013258 229015463 -53178201 + L1PB4 LINE L1 360 2137 -4516 * 8801 198 31 20 chr1 229015457 229018560 -53175104 + L1PB4 LINE L1 3613 6741 -1 11388 214 46 24 chr1 229018652 229019114 -53174550 + L1MA9 LINE L1 2400 2851 -3697 2347 97 0 3 chr1 229019114 229019424 -53174240 + AluSc SINE Alu 1 309 0 11388 214 46 24 chr1 229019424 229022836 -53170828 + L1MA9 LINE L1 2851 6367 -181 1750 209 0 0 chr1 229022836 229023133 -53170531 + AluJb SINE Alu 1 297 -15 11388 214 46 24 chr1 229023133 229023289 -53170375 + L1MA9 LINE L1 6367 6518 -30 482 320 36 31 chr1 229023296 229023490 -53170174 - L2 LINE L2 -1389 1925 1731 2356 130 77 18 chr1 229023490 229023891 -53169773 - MER57B LTR ERV1 0 434 10 1493 203 85 0 chr1 229024375 229024691 -53168973 + MER2 DNA MER2_type 2 344 0 26 0 0 0 chr1 229026006 229026032 -53167632 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr1 229026179 229026214 -53167450 + (A)n Simple_repeat Simple_repeat 1 35 0 189 132 0 0 chr1 229026926 229026964 -53166700 + (TA)n Simple_repeat Simple_repeat 2 39 0 288 254 0 0 chr1 229027426 229027489 -53166175 - L2 LINE L2 0 3313 3251 188 382 76 23 chr1 229027613 229027744 -53165920 + L2 LINE L2 3113 3250 -22 690 313 116 12 chr1 229027892 229028221 -53165443 - L2 LINE L2 -1 3312 2950 1433 222 85 28 chr1 229028244 229028681 -53164983 + MLT1C LTR MaLR 6 467 0 293 375 77 6 chr1 229029690 229029858 -53163806 + MLT1K LTR MaLR 3 182 -406 228 396 27 20 chr1 229029914 229030063 -53163601 + L2 LINE L2 2935 3084 -188 330 303 33 33 chr1 229030097 229030219 -53163445 - L2 LINE L2 -18 3295 3174 8508 155 28 8 chr1 229030601 229033094 -53160570 + L1MA3 LINE L1 3749 6296 -9 268 235 15 15 chr1 229033252 229033320 -53160344 + GA-rich Low_complexity Low_complexity 5 72 0 26107 140 15 12 chr1 229034059 229040403 -53153261 - L1PA8A LINE L1 -3 6443 19 220 372 61 41 chr1 229040836 229041032 -53152632 - L2 LINE L2 -177 3095 2896 690 335 56 12 chr1 229041058 229041473 -53152191 - L2 LINE L2 -264 3008 2572 360 310 114 50 chr1 229041777 229042058 -53151606 - L2 LINE L2 -838 2476 2178 198 0 0 0 chr1 229042098 229042120 -53151544 + (TTG)n Simple_repeat Simple_repeat 2 23 0 228 255 0 0 chr1 229042351 229042402 -53151262 + L2 LINE L2 3254 3304 -9 241 214 0 0 chr1 229042966 229043008 -53150656 + L2 LINE L2 3262 3303 -10 986 160 6 40 chr1 229043274 229043449 -53150215 + MER20 DNA MER1_type 39 207 -12 1980 127 3 35 chr1 229043450 229043764 -53149900 + AluSq SINE Alu 1 304 -9 188 398 24 0 chr1 229044813 229044896 -53148768 + MIR SINE MIR 6 90 -172 2060 286 79 70 chr1 229048098 229049662 -53144002 - L2 LINE L2 -2 3311 1743 359 208 42 1 chr1 229049695 229049791 -53143873 - L1MD3 LINE L1 -8 7985 6249 260 296 217 0 chr1 229049956 229050108 -53143556 + L2 LINE L2 1389 1573 -1741 877 296 81 56 chr1 229050146 229050460 -53143204 - L2 LINE L2 -2732 582 249 2055 135 0 0 chr1 229050460 229050779 -53142885 + AluSx SINE Alu 1 319 0 877 296 81 56 chr1 229050779 229050947 -53142717 - L2 LINE L2 -3065 249 87 339 292 117 17 chr1 229051752 229051872 -53141792 + MIR3 SINE MIR 67 198 -10 663 198 0 0 chr1 229052025 229052146 -53141518 - FLAM_A SINE Alu -12 121 1 187 53 35 70 chr1 229052365 229052422 -53141242 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 183 186 42 8 chr1 229052397 229052515 -53141149 + (TA)n Simple_repeat Simple_repeat 2 123 0 * 1488 297 93 38 chr1 229052704 229053888 -53139776 + L1MEc LINE L1 20 1268 -5128 1135 249 54 6 chr1 229053868 229054201 -53139463 + L1MEc LINE L1 3357 3705 -2510 * 961 325 14 32 chr1 229054243 229054674 -53138990 + L1M3a LINE L1 1 423 -5532 2116 233 90 32 chr1 229055437 229056293 -53137371 + L1M3f LINE L1 535 1425 -4095 941 147 86 0 chr1 229056293 229056456 -53137208 - THE1C LTR MaLR 0 375 199 1799 175 52 17 chr1 229056589 229056938 -53136726 - THE1C LTR MaLR 0 375 15 * 2907 173 52 12 chr1 229056925 229057525 -53136139 - MER39 LTR ERV1 -42 665 1 183 80 0 0 chr1 229058214 229058239 -53135425 + (CA)n Simple_repeat Simple_repeat 2 26 0 303 28 0 0 chr1 229058364 229058400 -53135264 + (TG)n Simple_repeat Simple_repeat 2 37 0 301 228 0 79 chr1 229058400 229058493 -53135171 + L1MC4 LINE L1 6616 6702 -1340 297 194 81 0 chr1 229060594 229060656 -53133008 - MLT1A1 LTR MaLR -11 363 297 28 0 0 0 chr1 229060656 229060684 -53132980 + AT_rich Low_complexity Low_complexity 1 28 0 1605 187 20 3 chr1 229060693 229060992 -53132672 - MLT1A1 LTR MaLR -61 304 1 198 103 0 0 chr1 229061002 229061031 -53132633 + (A)n Simple_repeat Simple_repeat 1 29 0 1277 210 28 53 chr1 229061160 229061479 -53132185 - MLT1A1 LTR MaLR 0 365 55 5813 20 0 0 chr1 229061479 229062324 -53131340 - L1P1 LINE L1 -609 5546 4702 5604 3 0 0 chr1 229062317 229062940 -53130724 + L1HS LINE L1 5533 6155 0 * 234 81 0 0 chr1 229062941 229062978 -53130686 + (A)n Simple_repeat Simple_repeat 1 37 0 244 233 0 17 chr1 229062978 229063038 -53130626 - MLT1A1 LTR MaLR -369 59 1 401 308 57 104 chr1 229063135 229063453 -53130211 - L2 LINE L2 -5 3267 1815 182 325 100 44 chr1 229063404 229063462 -53130202 + L3b LINE CR1 1164 1217 -366 * 1994 133 51 6 chr1 229063462 229063794 -53129870 + MER7A DNA MER2_type 1 345 -1 182 325 100 44 chr1 229063794 229063895 -53129769 + L3b LINE CR1 1217 1332 -251 198 339 8 85 chr1 229064388 229064506 -53129158 - L3 LINE CR1 -1468 109 1 1528 214 94 31 chr1 229065894 229066382 -53127282 - MLT1D LTR MaLR 0 626 12 254 241 27 9 chr1 229066758 229066870 -53126794 + A-rich Low_complexity Low_complexity 6 119 0 26 50 0 0 chr1 229067606 229067646 -53126018 + AT_rich Low_complexity Low_complexity 1 40 0 200 59 29 0 chr1 229067927 229067961 -53125703 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1322 320 134 0 chr1 229068324 229068935 -53124729 + L2 LINE L2 2372 3057 -256 187 368 0 23 chr1 229069252 229069339 -53124325 + MIR SINE MIR 49 133 -75 384 22 0 0 chr1 229070309 229070354 -53123310 + (TC)n Simple_repeat Simple_repeat 2 46 0 * 826 26 5 82 chr1 229070353 229070548 -53123116 + (TA)n Simple_repeat Simple_repeat 1 180 0 800 32 21 65 chr1 229070580 229070766 -53122898 + (TA)n Simple_repeat Simple_repeat 1 178 0 248 127 18 0 chr1 229070796 229070851 -53122813 + (CA)n Simple_repeat Simple_repeat 2 57 0 651 325 107 25 chr1 229071066 229071383 -53122281 - L3 LINE CR1 -5 1572 1230 182 356 81 0 chr1 229071386 229071473 -53122191 - L2 LINE L2 -17 3255 3162 269 225 38 0 chr1 229071508 229071588 -53122076 - LTR33A LTR ERVL -25 498 416 298 316 0 0 chr1 229071985 229072064 -53121600 - LTR50 LTR ERVL -714 81 3 1792 294 118 65 chr1 229072421 229073642 -53120022 - HERVL LTR ERVL -384 5380 4095 273 327 61 38 chr1 229073657 229073920 -53119744 - HERVL LTR ERVL -4034 1620 1352 686 218 84 0 chr1 229074154 229074296 -53119368 + MER58A DNA MER1_type 1 154 0 198 242 0 0 chr1 229074312 229074378 -53119286 + (TA)n Simple_repeat Simple_repeat 2 67 0 255 333 0 0 chr1 229075176 229075254 -53118410 + MIR SINE MIR 173 250 -12 329 335 172 25 chr1 229075351 229075670 -53117994 - L3 LINE CR1 -364 1213 848 604 275 165 0 chr1 229075927 229076127 -53117537 - MIR SINE MIR -25 237 5 292 379 6 33 chr1 229076127 229076309 -53117355 + L2 LINE L2 2581 2757 -557 227 270 0 16 chr1 229076509 229076572 -53117092 + (CATA)n Simple_repeat Simple_repeat 4 65 0 201 440 55 0 chr1 229076728 229076819 -53116845 + L2 LINE L2 3127 3222 -50 48 43 0 0 chr1 229076855 229076924 -53116740 + AT_rich Low_complexity Low_complexity 1 69 0 190 293 61 12 chr1 229077090 229077172 -53116492 - L3 LINE CR1 -761 816 731 1227 299 39 63 chr1 229077951 229078768 -53114896 + L1MEc LINE L1 789 1583 -4813 1530 196 39 17 chr1 229078768 229079125 -53114539 - MLT1A1 LTR MaLR 0 365 1 1227 299 39 63 chr1 229079125 229079230 -53114434 + L1MEc LINE L1 1583 1689 -4707 888 224 159 50 chr1 229079295 229079347 -53114317 + L1ME2 LINE L1 5320 5365 -799 1521 194 4 4 chr1 229079347 229079626 -53114038 + AluJo SINE Alu 12 290 -22 888 224 159 50 chr1 229079626 229079912 -53113752 + L1ME2 LINE L1 5365 5695 -469 958 257 123 25 chr1 229079915 229080320 -53113344 + L1ME2 LINE L1 5710 6154 -10 331 342 80 11 chr1 229080357 229080544 -53113120 - L3 LINE CR1 -835 742 543 361 330 72 53 chr1 229080639 229080903 -53112761 + MLT1K LTR MaLR 84 352 -236 1406 199 60 50 chr1 229081873 229082254 -53111410 - MLT1B LTR MaLR -4 386 2 208 176 0 20 chr1 229082616 229082667 -53110997 + A-rich Low_complexity Low_complexity 3 52 0 3684 250 64 10 chr1 229082695 229084080 -53109584 + L1MC2 LINE L1 3 1452 -4901 2672 245 49 8 chr1 229084512 229085433 -53108231 + L1MC2 LINE L1 3203 4161 -2403 795 110 8 0 chr1 229085429 229085547 -53108117 - L1P3 LINE L1 -375 5779 5661 * 676 88 0 0 chr1 229085547 229085638 -53108026 + L1PA8 LINE L1 6005 6095 -77 * 14758 212 23 34 chr1 229085627 229086559 -53107105 + L1PB4 LINE L1 1320 2261 -4957 1421 203 0 50 chr1 229086559 229086881 -53106783 + AluJb SINE Alu 1 307 0 14758 212 23 34 chr1 229086881 229087061 -53106603 + L1PB4 LINE L1 2261 2441 -4777 2177 118 0 3 chr1 229087061 229087367 -53106297 + AluSg SINE Alu 1 305 -5 14758 212 23 34 chr1 229087367 229088231 -53105433 + L1PB4 LINE L1 2441 3313 -3905 2370 67 0 3 chr1 229088231 229088529 -53105135 + AluY SINE Alu 1 297 -14 14758 212 23 34 chr1 229088529 229089875 -53103789 + L1PB4 LINE L1 3313 4672 -2546 2005 116 3 35 chr1 229089875 229090186 -53103478 + AluSg1 SINE Alu 1 301 -8 14758 212 23 34 chr1 229090186 229090705 -53102959 + L1PB4 LINE L1 4672 5195 -2023 2300 110 0 0 chr1 229090705 229091006 -53102658 + AluSx SINE Alu 1 301 -11 14758 212 23 34 chr1 229091006 229093077 -53100587 + L1PB4 LINE L1 5195 7211 -7 5385 210 36 18 chr1 229093284 229095830 -53097834 + L1MC2 LINE L1 4147 6750 -12 438 306 66 66 chr1 229095896 229096099 -53097565 + HAL1b LINE L1 7 212 -1136 1507 155 16 96 chr1 229096099 229096421 -53097243 + AluJb SINE Alu 1 296 -16 438 306 66 66 chr1 229096421 229096521 -53097143 + HAL1b LINE L1 211 310 -1038 1786 234 41 32 chr1 229096522 229097014 -53096650 + MLT1D LTR MaLR 2 497 -8 1243 301 98 69 chr1 229097497 229098737 -53094927 + L1MC5 LINE L1 6649 7924 -37 198 167 0 0 chr1 229099588 229099624 -53094040 + T-rich Low_complexity Low_complexity 1 36 0 206 333 114 24 chr1 229100780 229100903 -53092761 - L2 LINE L2 -9 3304 3171 315 295 101 20 chr1 229103120 229103269 -53090395 - MIR SINE MIR -8 254 94 563 224 50 12 chr1 229104693 229104854 -53088810 + MER3 DNA MER1_type 1 167 -42 270 243 22 22 chr1 229105090 229105226 -53088438 + T-rich Low_complexity Low_complexity 6 141 0 1541 195 26 13 chr1 229106445 229106748 -53086916 - AluJo SINE Alu -5 307 1 1522 126 14 0 chr1 229106783 229107005 -53086659 + AluSq SINE Alu 1 225 -88 477 286 82 6 chr1 229107020 229107202 -53086462 - MER46C DNA MER2_type -97 241 46 3114 218 87 20 chr1 229107205 229108115 -53085549 + L1ME2 LINE L1 5198 6157 -7 293 175 48 32 chr1 229108119 229108182 -53085482 - MER46C DNA MER2_type -274 64 1 365 269 6 99 chr1 229109206 229109377 -53084287 + MIR SINE MIR 69 223 -39 281 216 258 0 chr1 229109402 229109499 -53084165 + MIR SINE MIR 92 213 -49 196 301 82 0 chr1 229109885 229109958 -53083706 + L2 LINE L2 3185 3263 -9 812 279 42 62 chr1 229110044 229110597 -53083067 + L1ME4a LINE L1 5575 6116 -5 294 309 86 13 chr1 229110681 229110833 -53082831 + MIR SINE MIR 60 222 -40 210 380 50 5 chr1 229111546 229111767 -53081897 + L2 LINE L2 2838 3068 -204 2890 270 168 32 chr1 229112093 229113721 -53079943 + L2 LINE L2 1414 3261 -52 283 353 88 6 chr1 229114580 229114750 -53078914 - MIR SINE MIR -75 187 4 679 318 28 32 chr1 229115348 229115477 -53078187 + MIR SINE MIR 3 132 -130 1706 86 4 0 chr1 229115477 229115709 -53077955 - L1PB1 LINE L1 -1 6150 5918 679 318 28 32 chr1 229115709 229115831 -53077833 + MIR SINE MIR 132 253 -9 300 236 63 0 chr1 229115833 229115915 -53077749 - MIR SINE MIR -45 163 76 239 346 52 37 chr1 229117440 229117576 -53076088 - L2 LINE L2 -236 3036 2899 1202 247 58 48 chr1 229118651 229119113 -53074551 + MLT1C LTR MaLR 1 467 0 2231 95 0 0 chr1 229119307 229119620 -53074044 + AluSx SINE Alu 1 313 0 257 391 58 0 chr1 229120668 229120806 -53072858 - MIR SINE MIR -48 214 69 1880 195 3 29 chr1 229120810 229121185 -53072479 - MLT1A1 LTR MaLR 0 365 1 2128 145 18 99 chr1 229121329 229121783 -53071881 + MSTB1 LTR MaLR 3 419 -13 238 294 245 0 chr1 229122339 229122441 -53071223 - L2 LINE L2 -38 3234 3108 353 382 16 24 chr1 229122452 229122706 -53070958 + L2 LINE L2 2414 2665 -649 247 267 200 6 chr1 229122797 229122962 -53070702 + MIR SINE MIR 52 248 -14 391 335 65 18 chr1 229123188 229123358 -53070306 + LTR16A LTR ERVL 130 307 -143 453 319 45 13 chr1 229123446 229123603 -53070061 + HERV16 LTR ERVL 35 196 -4800 511 191 105 86 chr1 229123677 229123887 -53069777 - MER58C DNA MER1_type -1 214 1 297 268 0 0 chr1 229123926 229123997 -53069667 - MLT1F LTR MaLR -471 71 1 572 240 25 116 chr1 229124328 229124603 -53069061 - L1ME1 LINE L1 -17 6543 6294 1818 137 39 60 chr1 229124611 229124946 -53068718 + THE1B LTR MaLR 37 364 0 5549 94 26 4 chr1 229124947 229125703 -53067961 + THE1B-int LTR MaLR 2 774 -806 366 106 61 15 chr1 229125704 229125770 -53067894 + THE1C LTR MaLR 307 375 0 1970 221 127 15 chr1 229125771 229126831 -53066833 - L1ME1 LINE L1 -263 6297 5114 425 270 119 50 chr1 229126903 229127322 -53066342 - L1ME1 LINE L1 -4525 2015 1568 1318 243 9 34 chr1 229127500 229127941 -53065723 + L1M4 LINE L1 3586 4015 -2131 14255 200 27 20 chr1 229128108 229129845 -53063819 + L1PA16 LINE L1 3 1726 -5143 3736 107 0 4 chr1 229129845 229130358 -53063306 - MER9 LTR ERVK 0 511 1 14255 200 27 20 chr1 229130358 229135674 -53057990 + L1PA16 LINE L1 1726 6869 0 462 18 0 0 chr1 229135840 229135895 -53057769 + (CA)n Simple_repeat Simple_repeat 1 55 0 2028 324 53 28 chr1 229136216 229137087 -53056577 + HERV16 LTR ERVL 2181 3073 -1923 2050 345 50 42 chr1 229137205 229139257 -53054407 + HERV16 LTR ERVL 3286 5335 -150 796 290 34 84 chr1 229139381 229139846 -53053818 + LTR16B LTR ERVL 1 442 -22 386 322 58 119 chr1 229139867 229140246 -53053418 + L2 LINE L2 2915 3270 -2 273 29 0 0 chr1 229140342 229140376 -53053288 + (CA)n Simple_repeat Simple_repeat 2 35 0 441 95 0 0 chr1 229142072 229142135 -53051529 + (TG)n Simple_repeat Simple_repeat 2 64 0 501 311 62 50 chr1 229144196 229144437 -53049227 + L2 LINE L2 2543 2786 -528 189 304 29 14 chr1 229144595 229144664 -53049000 + MIR SINE MIR 64 133 -75 599 213 65 88 chr1 229144857 229145073 -53048591 - MIR SINE MIR -15 247 37 2560 23 0 0 chr1 229145596 229145902 -53047762 + L1PA2 LINE L1 5703 6010 -145 1025 9 0 0 chr1 229146004 229146160 -53047504 + L1PA2 LINE L1 6030 6185 0 5577 197 12 6 chr1 229146183 229147393 -53046271 + L1MA3 LINE L1 2304 3520 -2626 5502 163 22 4 chr1 229147386 229148450 -53045214 + L1MA3 LINE L1 4316 5398 -748 * 1541 107 0 19 chr1 229148450 229148666 -53044998 + AluSq SINE Alu 1 212 -101 2365 81 0 0 chr1 229148669 229148967 -53044697 - AluY SINE Alu -13 298 1 299 116 159 14 chr1 229148969 229149038 -53044626 + AluSc SINE Alu 186 264 -35 3853 80 8 8 chr1 229149040 229149576 -53044088 + L1MA3 LINE L1 5400 5935 -370 2936 110 22 0 chr1 229149582 229150029 -53043635 + L1MA2 LINE L1 5848 6304 0 36 62 0 0 chr1 229150576 229150640 -53043024 + AT_rich Low_complexity Low_complexity 1 64 0 288 140 73 30 chr1 229151147 229151311 -53042353 + (TA)n Simple_repeat Simple_repeat 1 171 0 26 50 0 0 chr1 229151414 229151454 -53042210 + AT_rich Low_complexity Low_complexity 1 40 0 2212 109 78 8 chr1 229151469 229151855 -53041809 + L1MA6 LINE L1 5888 6300 0 344 269 63 11 chr1 229151953 229152128 -53041536 + L1MEd LINE L1 919 1102 -5017 355 325 58 24 chr1 229152180 229152595 -53041069 + L1MEd LINE L1 1193 1695 -1007 738 149 23 11 chr1 229153049 229153223 -53040441 + CT-rich Low_complexity Low_complexity 2 177 0 1409 77 21 0 chr1 229153493 229153687 -53039977 + L1MA1 LINE L1 6105 6302 0 309 225 0 0 chr1 229153699 229153770 -53039894 + MLT1H LTR MaLR 479 549 0 789 198 113 31 chr1 229153835 229154092 -53039572 + L1MC/D LINE L1 1219 1496 -4930 1073 112 0 6 chr1 229154092 229154110 -53039554 + (GGAA)n Simple_repeat Simple_repeat 1 185 0 1073 112 0 6 chr1 229154110 229154279 -53039385 + (GGAA)n Simple_repeat Simple_repeat 2 169 0 1791 112 52 8 chr1 229155188 229155456 -53038208 + AluSx SINE Alu 1 280 -32 345 24 0 0 chr1 229155456 229155498 -53038166 + (TAA)n Simple_repeat Simple_repeat 1 42 0 360 286 50 14 chr1 229155532 229155672 -53037992 + L1MC/D LINE L1 1487 1631 -4795 2051 114 7 4 chr1 229155688 229155968 -53037696 + AluSq SINE Alu 1 281 -32 2119 258 44 3 chr1 229156011 229157298 -53036366 + L1MC/D LINE L1 1729 3286 -3140 373 218 0 129 chr1 229157308 229157364 -53036300 + L1MC/D LINE L1 5871 5933 -2132 2212 110 0 3 chr1 229157364 229157664 -53036000 - AluSg SINE Alu -7 303 5 373 218 0 129 chr1 229157664 229157754 -53035910 + L1MC/D LINE L1 5933 5998 -2067 37 39 0 0 chr1 229157756 229157807 -53035857 + AT_rich Low_complexity Low_complexity 1 51 0 315 171 148 0 chr1 229157844 229157932 -53035732 + L1M4 LINE L1 4492 4592 -1554 * 612 286 127 31 chr1 229157924 229159079 -53034585 + L1ME LINE L1 4372 5642 -528 461 281 101 35 chr1 229159602 229159830 -53033834 + MIR SINE MIR 20 262 0 1903 152 0 10 chr1 229161166 229161469 -53032195 + AluSx SINE Alu 1 300 -12 291 54 0 0 chr1 229161599 229161636 -53032028 + (TG)n Simple_repeat Simple_repeat 1 37 0 345 188 14 0 chr1 229161769 229161838 -53031826 - L2 LINE L2 -19 3294 3225 255 61 0 0 chr1 229162778 229162811 -53030853 + (CA)n Simple_repeat Simple_repeat 2 34 0 269 89 22 0 chr1 229163055 229163100 -53030564 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 3566 110 15 21 chr1 229163100 229163710 -53029954 + MER4B LTR ERV1 1 772 -7 259 253 44 144 chr1 229165857 229166086 -53027578 - MIR SINE MIR -13 249 44 215 170 21 0 chr1 229166417 229166464 -53027200 + (TA)n Simple_repeat Simple_repeat 2 49 0 216 280 112 56 chr1 229166677 229166784 -53026880 - L2 LINE L2 0 3313 3201 2009 162 0 0 chr1 229166838 229167141 -53026523 + AluJb SINE Alu 1 303 -9 1032 208 173 35 chr1 229167383 229167729 -53025935 + MER57A LTR ERV1 1 394 -9 426 286 21 21 chr1 229167801 229167941 -53025723 + MIR3 SINE MIR 39 178 -30 341 290 53 29 chr1 229170344 229170528 -53023136 + L1ME LINE L1 5424 5555 -611 330 26 0 0 chr1 229170545 229170584 -53023080 + (TG)n Simple_repeat Simple_repeat 2 40 0 3412 118 49 10 chr1 229170899 229171408 -53022256 + MER1A DNA MER1_type 1 529 0 2242 126 0 0 chr1 229171813 229172123 -53021541 + AluSq SINE Alu 2 311 -2 328 351 109 0 chr1 229172809 229172974 -53020690 + L2 LINE L2 2871 3053 -219 1872 155 0 3 chr1 229173005 229173308 -53020356 + AluSx SINE Alu 1 302 -10 213 267 133 42 chr1 229173311 229173431 -53020233 + L2 LINE L2 3162 3292 -21 502 162 0 67 chr1 229173524 229173597 -53020067 + HY3 scRNA scRNA 3 68 -33 2452 138 36 17 chr1 229173597 229174017 -53019647 + MSTA LTR MaLR 1 428 0 502 162 0 67 chr1 229174017 229174048 -53019616 + HY3 scRNA scRNA 68 100 -1 2207 118 0 3 chr1 229174694 229174998 -53018666 + AluSq SINE Alu 1 303 -10 637 203 52 13 chr1 229175003 229175156 -53018508 + L1MA8 LINE L1 6126 6284 -7 825 203 53 0 chr1 229176274 229176481 -53017183 + L1MD3 LINE L1 7762 7979 -16 266 191 29 73 chr1 229176930 229176998 -53016666 - AluJ/FRAM SINE Alu -12 290 226 322 229 0 0 chr1 229177110 229177171 -53016493 - Tigger5 DNA MER2_type 0 2323 2263 33 25 0 0 chr1 229177213 229177253 -53016411 + AT_rich Low_complexity Low_complexity 1 40 0 358 359 41 15 chr1 229177632 229177827 -53015837 - L3b LINE CR1 -33 1550 1351 3101 162 6 4 chr1 229179400 229179911 -53013753 - MER44D DNA MER2_type 0 605 222 781 189 0 13 chr1 229180121 229180280 -53013384 + L1MB1 LINE L1 6011 6167 -1 1353 193 0 49 chr1 229180702 229180966 -53012698 - AluJo SINE Alu -19 293 43 304 317 40 88 chr1 229181151 229181378 -53012286 + L2 LINE L2 3098 3313 0 454 331 43 5 chr1 229181565 229181749 -53011915 + L2 LINE L2 2567 2757 -557 291 338 118 7 chr1 229182011 229182147 -53011517 + L2 LINE L2 2945 3095 -177 1600 288 59 45 chr1 229182232 229182404 -53011260 - L2 LINE L2 -1 3312 3144 1881 171 126 8 chr1 229182404 229182785 -53010879 + MSTB LTR MaLR 1 426 0 1600 288 59 45 chr1 229182785 229183507 -53010157 - L2 LINE L2 -169 3144 2400 390 301 55 12 chr1 229183508 229183671 -53009993 - L2 LINE L2 -1129 2185 2016 1948 191 17 19 chr1 229183767 229183851 -53009813 + MLT1A1 LTR MaLR 1 84 -281 1696 186 7 3 chr1 229183851 229184141 -53009523 + AluJb SINE Alu 1 291 -21 1948 191 17 19 chr1 229184141 229184418 -53009246 + MLT1A1 LTR MaLR 84 361 -4 1401 133 176 4 chr1 229184562 229184818 -53008846 - AluJb SINE Alu -12 300 1 716 221 6 0 chr1 229185805 229185968 -53007696 + L1PBa LINE L1 6 169 -6694 6641 142 37 4 chr1 229185982 229186553 -53007111 + L1PBa LINE L1 1381 1932 -4931 558 177 35 9 chr1 229186553 229186666 -53006998 + L1PA8A LINE L1 6016 6131 0 6641 142 37 4 chr1 229186666 229187271 -53006393 + L1PBa LINE L1 1932 2596 -4267 287 310 9 0 chr1 229237281 229237394 -52956270 + L1MEc LINE L1 1644 1757 -4639 7129 232 43 24 chr1 229237396 229238941 -52954723 + L1MEc LINE L1 2352 3953 -2262 1782 165 0 10 chr1 229238941 229239244 -52954420 + AluJb SINE Alu 1 300 -12 7129 232 43 24 chr1 229239244 229239921 -52953743 + L1MEc LINE L1 3953 4616 -1599 305 200 47 60 chr1 229239922 229240072 -52953592 + (TTATA)n Simple_repeat Simple_repeat 1 148 0 231 182 0 0 chr1 229240090 229240134 -52953530 + L1MEc LINE L1 4632 4675 -1540 247 237 17 0 chr1 229240489 229240548 -52953116 + MER3 DNA MER1_type 31 90 -119 * 1077 149 9 65 chr1 229240511 229240725 -52952939 - MER3 DNA MER1_type -6 203 2 401 341 60 6 chr1 229241328 229241495 -52952169 - MIR SINE MIR -82 180 5 823 303 12 33 chr1 229242039 229242376 -52951288 + L1MEc LINE L1 39 368 -6028 1018 271 48 56 chr1 229242402 229242919 -52950745 + L1MEc LINE L1 724 1236 -5160 414 205 77 0 chr1 229242925 229243003 -52950661 + Tigger1 DNA MER2_type 2 85 -2333 13422 129 22 8 chr1 229243106 229245201 -52948463 + Tigger1 DNA MER2_type 294 2418 0 901 236 101 25 chr1 229245212 229245568 -52948096 + L1MEc LINE L1 1256 1638 -4758 865 245 18 18 chr1 229245549 229245827 -52947837 + L1MEc LINE L1 5102 5379 -836 * 759 220 0 40 chr1 229246033 229246059 -52947605 + L1MEc LINE L1 1629 1655 -4741 2068 123 0 7 chr1 229246059 229246365 -52947299 + AluSq SINE Alu 3 306 0 759 220 0 40 chr1 229246365 229246537 -52947127 + L1MEc LINE L1 1654 1820 -4576 809 233 149 24 chr1 229246917 229247166 -52946498 - LTR16A1 LTR ERVL 0 457 178 3170 201 76 30 chr1 229247199 229248011 -52945653 - MER63C DNA MER1_type -5 925 76 307 158 42 21 chr1 229248011 229248106 -52945558 + GA-rich Low_complexity Low_complexity 4 100 0 288 131 66 0 chr1 229248110 229248171 -52945493 - MER63C DNA MER1_type -860 70 6 461 265 7 48 chr1 229248183 229248330 -52945334 - LTR16A1 LTR ERVL -309 148 8 1067 318 78 5 chr1 229248340 229248777 -52944887 + L2 LINE L2 1897 2365 -949 233 267 13 27 chr1 229249105 229249180 -52944484 + L1MC4a LINE L1 5732 5805 -2003 1840 54 0 104 chr1 229249261 229249540 -52944124 - AluY SINE Alu -17 294 45 1119 293 38 34 chr1 229249701 229250145 -52943519 - L2 LINE L2 0 3313 2868 300 83 0 0 chr1 229250864 229250912 -52942752 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 988 297 39 48 chr1 229251222 229251949 -52941715 + L1MEc LINE L1 639 1358 -5038 24 0 0 0 chr1 229252015 229252039 -52941625 + AT_rich Low_complexity Low_complexity 1 24 0 1294 263 106 27 chr1 229252115 229252441 -52941223 + L1MEc LINE L1 1597 1896 -4500 2241 112 141 5 chr1 229252441 229252816 -52940848 + MSTA LTR MaLR 1 426 -2 1294 263 106 27 chr1 229252816 229253185 -52940479 + L1MEc LINE L1 1896 2347 -4049 207 0 0 0 chr1 229253842 229253865 -52939799 + (A)n Simple_repeat Simple_repeat 1 23 0 289 270 80 86 chr1 229253903 229254066 -52939598 - MIR SINE MIR -78 184 23 1424 256 43 53 chr1 229254574 229254698 -52938966 + L1MEc LINE L1 2315 2439 -3776 2267 114 3 0 chr1 229254698 229255004 -52938660 + AluSx SINE Alu 1 307 -5 1424 256 43 53 chr1 229255004 229255501 -52938163 + L1MEc LINE L1 2439 2930 -3285 243 224 26 43 chr1 229256246 229256362 -52937302 + A-rich Low_complexity Low_complexity 1 114 0 531 0 0 0 chr1 229256526 229256585 -52937079 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 21 57 0 0 chr1 229257045 229257080 -52936584 + AT_rich Low_complexity Low_complexity 1 35 0 244 229 156 41 chr1 229257163 229257285 -52936379 + L1MC4a LINE L1 6186 6321 -1487 30 0 0 0 chr1 229258830 229258860 -52934804 + AT_rich Low_complexity Low_complexity 1 30 0 299 345 0 0 chr1 229259946 229260033 -52933631 + MIR3 SINE MIR 120 206 -2 444 232 72 32 chr1 229260655 229260780 -52932884 - L2 LINE L2 0 3313 3184 21 0 0 0 chr1 229262036 229262057 -52931607 + AT_rich Low_complexity Low_complexity 1 21 0 653 271 80 15 chr1 229263154 229263353 -52930311 + MIR SINE MIR 20 231 -31 1565 247 60 23 chr1 229263353 229263838 -52929826 + MER74B LTR ERVL 53 555 -67 839 200 33 0 chr1 229264076 229264256 -52929408 - MER5A DNA MER1_type 0 189 4 333 243 72 18 chr1 229264762 229264873 -52928791 - MIR SINE MIR -38 224 108 219 313 42 21 chr1 229264931 229265027 -52928637 + MIR3 SINE MIR 96 193 -15 762 123 80 75 chr1 229265289 229265430 -52928234 + MER53 DNA DNA 1 145 -44 1620 195 0 10 chr1 229265430 229265738 -52927926 - AluJo SINE Alu -6 306 2 762 123 80 75 chr1 229265738 229265783 -52927881 + MER53 DNA DNA 145 188 -1 201 267 0 0 chr1 229266363 229266408 -52927256 - L2 LINE L2 -42 3230 3186 1678 189 4 0 chr1 229266445 229266753 -52926911 + AluSx SINE Alu 1 309 0 539 285 113 74 chr1 229267171 229267480 -52926184 - L2 LINE L2 -3 3310 2990 205 329 71 0 chr1 229269302 229269372 -52924292 + L2 LINE L2 3146 3220 -52 610 295 73 59 chr1 229270451 229270864 -52922800 + L1MC4a LINE L1 5511 5935 -186 258 32 0 0 chr1 229270864 229270895 -52922769 + (TATG)n Simple_repeat Simple_repeat 1 31 0 610 295 73 59 chr1 229270895 229271027 -52922637 + L1MC4a LINE L1 5935 6064 -57 748 276 44 16 chr1 229271123 229271457 -52922207 + L1MD3 LINE L1 1272 1606 -4822 310 241 80 27 chr1 229271606 229271718 -52921946 + L1MD3 LINE L1 5049 5166 -1260 687 236 153 11 chr1 229271741 229272197 -52921467 + L1MD3 LINE L1 5935 6423 -23 2007 241 15 15 chr1 229272211 229272734 -52920930 + L1MD3 LINE L1 7753 8275 0 435 281 48 14 chr1 229274624 229274770 -52918894 - MLT1K LTR MaLR -108 480 330 292 321 145 0 chr1 229275044 229275203 -52918461 - MIR SINE MIR -34 228 47 296 278 213 0 chr1 229275724 229275832 -52917832 - L2 LINE L2 -4 3268 3138 242 276 0 0 chr1 229275840 229275898 -52917766 + CT-rich Low_complexity Low_complexity 1 58 0 470 279 7 71 chr1 229275906 229276046 -52917618 + MER91A DNA MER1_type 55 185 -11 749 153 6 0 chr1 229276063 229276220 -52917444 + CT-rich Low_complexity Low_complexity 1 158 0 245 428 42 33 chr1 229276240 229276546 -52917118 - L2 LINE L2 -46 3226 2918 593 236 0 8 chr1 229276667 229276790 -52916874 + FLAM_A SINE Alu 3 124 -9 22 0 0 0 chr1 229277009 229277031 -52916633 + AT_rich Low_complexity Low_complexity 1 22 0 2302 86 10 3 chr1 229277239 229277541 -52916123 + AluSx SINE Alu 1 304 -8 2150 112 20 0 chr1 229278755 229279050 -52914614 + AluSx SINE Alu 12 312 0 470 265 73 0 chr1 229279484 229279635 -52914029 - MER103 DNA DNA -2 164 3 24 0 0 0 chr1 229279712 229279736 -52913928 + AT_rich Low_complexity Low_complexity 1 24 0 460 188 0 12 chr1 229279805 229279890 -52913774 + AluJ/FLAM SINE Alu 1 84 -228 35 78 0 0 chr1 229280049 229280126 -52913538 + AT_rich Low_complexity Low_complexity 1 77 0 26 30 0 0 chr1 229280155 229280188 -52913476 + AT_rich Low_complexity Low_complexity 1 33 0 4775 91 16 3 chr1 229280846 229281525 -52912139 + L1PB3 LINE L1 5465 6152 -2 1752 199 49 86 chr1 229285003 229285515 -52908149 + L1ME2 LINE L1 5662 6154 -10 305 283 22 83 chr1 229285549 229285779 -52907885 + L1MC4 LINE L1 7826 8041 -1 481 224 115 19 chr1 229286408 229286518 -52907146 - MER53 DNA DNA 0 189 58 189 0 0 0 chr1 229286518 229286539 -52907125 + (TA)n Simple_repeat Simple_repeat 2 22 0 481 224 115 19 chr1 229286539 229286584 -52907080 - MER53 DNA DNA -131 58 19 2074 104 0 42 chr1 229286779 229287087 -52906577 - AluSg SINE Alu -15 295 1 793 252 84 34 chr1 229289034 229289272 -52904392 - MIR SINE MIR 0 262 13 31 44 0 0 chr1 229289296 229289341 -52904323 + AT_rich Low_complexity Low_complexity 1 45 0 1156 99 0 0 chr1 229289688 229289850 -52903814 + L1MA5A LINE L1 6126 6287 -10 762 312 36 4 chr1 229291952 229292205 -52901459 - MIR SINE MIR 0 262 2 601 306 53 5 chr1 229292390 229292596 -52901068 - MIR SINE MIR -3 259 44 659 287 107 52 chr1 229293113 229293535 -52900129 - LTR33 LTR ERVL -2 519 75 1529 22 0 0 chr1 229293801 229293981 -52899683 + L1PA2 LINE L1 5974 6153 -2 752 258 0 0 chr1 229294069 229294247 -52899417 - MER5B DNA MER1_type 0 178 1 578 276 186 5 chr1 229294744 229294965 -52898699 + MIR SINE MIR 2 262 0 21 0 0 0 chr1 229295922 229295943 -52897721 + AT_rich Low_complexity Low_complexity 1 21 0 2916 135 46 10 chr1 229296344 229296848 -52896816 + L1PB4 LINE L1 5628 6149 -7 318 210 57 113 chr1 229297059 229297183 -52896481 - MIR3 SINE MIR -7 201 85 334 162 0 0 chr1 229297666 229297740 -52895924 + L1PA13 LINE L1 2707 2780 -4069 16663 167 17 11 chr1 229297803 229299054 -52894610 + L1PA13 LINE L1 2789 4031 -2835 2164 132 3 0 chr1 229299054 229299365 -52894299 + AluSx SINE Alu 1 312 0 16663 167 17 11 chr1 229299365 229301328 -52892336 + L1PA13 LINE L1 4031 6016 -850 279 0 0 0 chr1 229301328 229301359 -52892305 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 16663 167 17 11 chr1 229301359 229302211 -52891453 + L1PA13 LINE L1 6016 6862 -4 362 308 120 30 chr1 229302276 229302510 -52891154 - MIR SINE MIR -6 256 2 836 97 71 0 chr1 229302725 229302838 -52890826 - AluYb8 SINE Alu -197 121 1 595 287 13 0 chr1 229303582 229303739 -52889925 - MLT2B1 LTR ERVL -349 171 13 1050 237 96 50 chr1 229304640 229305016 -52888648 + MLT2B1 LTR ERVL 13 405 -115 409 148 0 0 chr1 229305039 229305100 -52888564 - FLAM_A SINE Alu -51 91 31 338 197 0 0 chr1 229305138 229305209 -52888455 + MLT2B1 LTR ERVL 410 480 -40 770 157 14 27 chr1 229305742 229305889 -52887775 - Tigger1 DNA MER2_type 0 2418 2274 287 154 49 49 chr1 229305950 229306073 -52887591 + GA-rich Low_complexity Low_complexity 3 125 0 220 98 39 20 chr1 229306076 229306127 -52887537 + (CAA)n Simple_repeat Simple_repeat 2 53 0 1850 136 7 4 chr1 229306140 229306413 -52887251 - AluSx SINE Alu -38 274 1 1137 187 24 11 chr1 229306442 229306718 -52886946 + L1MC4a LINE L1 7551 7995 0 341 337 35 45 chr1 229311331 229311530 -52882134 - L2 LINE L2 -194 3078 2882 756 181 17 40 chr1 229312075 229312252 -52881412 - MER3 DNA MER1_type -83 126 1 1491 170 139 9 chr1 229313007 229313330 -52880334 - MLT1A1 LTR MaLR 0 365 1 180 152 0 0 chr1 229314289 229314322 -52879342 + GA-rich Low_complexity Low_complexity 2 34 0 937 209 24 29 chr1 229315276 229315486 -52878178 + MER58A DNA MER1_type 3 211 -13 447 326 84 11 chr1 229315491 229315669 -52877995 + MIR SINE MIR 45 235 -27 2331 91 0 0 chr1 229315800 229316097 -52877567 + AluSx SINE Alu 1 297 -15 2775 116 14 7 chr1 229316113 229316544 -52877120 - MER57B LTR ERV1 0 434 1 187 325 71 24 chr1 229318018 229318144 -52875520 - MIR SINE MIR -97 165 34 404 336 29 7 chr1 229319715 229319852 -52873812 - MIR SINE MIR -110 152 13 432 322 9 0 chr1 229322498 229322613 -52871051 - L2 LINE L2 -6 3307 3192 1317 268 73 20 chr1 229322641 229323037 -52870627 - LTR40a LTR ERVL 0 519 103 297 137 20 20 chr1 229324050 229324101 -52869563 - LTR40b LTR ERVL -390 72 22 470 335 72 0 chr1 229324331 229324525 -52869139 + MIR SINE MIR 50 257 -5 431 273 173 7 chr1 229324566 229324705 -52868959 - MIR SINE MIR -73 189 28 1817 154 7 10 chr1 229324786 229325092 -52868572 + AluJb SINE Alu 4 308 -4 407 262 255 0 chr1 229325096 229325241 -52868423 + MIR SINE MIR 55 236 -26 200 132 0 26 chr1 229325252 229325290 -52868374 + (TTA)n Simple_repeat Simple_repeat 3 39 0 878 254 15 38 chr1 229325888 229326152 -52867512 + MIR SINE MIR 2 259 -3 746 101 0 9 chr1 229327058 229327167 -52866497 + AluY SINE Alu 1 108 -203 2004 101 47 0 chr1 229327608 229327885 -52865779 - AluSx SINE Alu -22 290 1 36 40 0 0 chr1 229328087 229328137 -52865527 + AT_rich Low_complexity Low_complexity 1 50 0 1555 155 17 0 chr1 229328159 229328398 -52865266 - AluSx SINE Alu -20 292 50 515 256 92 30 chr1 229328412 229328576 -52865088 + LTR16C LTR ERVL 1 174 -317 30 27 0 0 chr1 229328579 229328616 -52865048 + AT_rich Low_complexity Low_complexity 1 37 0 530 134 0 12 chr1 229328635 229328717 -52864947 - MLT1A1 LTR MaLR -266 99 19 1184 139 9 19 chr1 229328717 229328933 -52864731 + L1MA8 LINE L1 6075 6288 -3 1173 255 74 60 chr1 229328938 229329862 -52863802 + L1ME3A LINE L1 4731 5656 -506 879 200 86 24 chr1 229329862 229330072 -52863592 + MER58A DNA MER1_type 2 224 0 1173 255 74 60 chr1 229330072 229330375 -52863289 + L1ME3A LINE L1 5656 5953 -209 464 158 69 0 chr1 229330456 229330557 -52863107 - L1MA8 LINE L1 -4 6287 6180 714 275 88 17 chr1 229330818 229331390 -52862274 - HAL1 LINE L1 -1710 797 12 10392 35 0 3 chr1 229331433 229333450 -52860214 + L1PA5 LINE L1 4138 6151 -3 201 264 132 44 chr1 229333856 229333947 -52859717 - MIR SINE MIR -80 182 84 32 0 0 0 chr1 229334037 229334069 -52859595 + AT_rich Low_complexity Low_complexity 1 32 0 230 81 27 0 chr1 229334201 229334238 -52859426 + (CA)n Simple_repeat Simple_repeat 2 39 0 255 277 155 26 chr1 229335154 229335309 -52858355 + MIR SINE MIR 8 182 -80 276 327 150 5 chr1 229336065 229336285 -52857379 - L2 LINE L2 -450 2864 2613 262 229 0 0 chr1 229338165 229338226 -52855438 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 320 300 17 8 chr1 229338601 229338721 -52854943 - L2 LINE L2 -969 2345 2225 186 361 24 0 chr1 229338723 229338806 -52854858 - L2 LINE L2 -255 3017 2933 2135 104 0 16 chr1 229338931 229339240 -52854424 - AluSx SINE Alu -7 305 2 22 35 0 0 chr1 229340099 229340128 -52853536 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 229340142 229340166 -52853498 + AT_rich Low_complexity Low_complexity 1 24 0 1971 260 131 9 chr1 229341185 229341993 -52851671 + L2 LINE L2 2153 3069 -244 392 237 68 119 chr1 229342099 229342318 -52851346 + L2 LINE L2 3106 3313 0 1808 179 0 3 chr1 229342321 229342623 -52851041 + AluJb SINE Alu 2 302 -10 379 300 20 0 chr1 229343082 229343182 -52850482 + MER69A DNA AcHobo 1 102 -75 667 239 38 16 chr1 229344668 229344852 -52848812 + MER113 DNA MER1_type? 271 458 -63 616 243 45 23 chr1 229349320 229349337 -52844327 + Charlie2b DNA MER1_type 172 187 -2675 498 66 0 121 chr1 229349337 229349428 -52844236 + MADE1 DNA Mariner 1 80 0 616 243 45 23 chr1 229349428 229349587 -52844077 + Charlie2b DNA MER1_type 187 352 -2510 808 244 142 6 chr1 229349603 229349947 -52843717 + Charlie2b DNA MER1_type 829 1219 -1563 616 186 25 12 chr1 229349981 229350142 -52843522 + Charlie2b DNA MER1_type 2080 2242 -540 1373 151 16 0 chr1 229350168 229350413 -52843251 - L1MA4 LINE L1 -6 6294 6046 4171 171 54 58 chr1 229350500 229350891 -52842773 - Charlie1a DNA MER1_type -1404 1357 966 1004 191 0 5 chr1 229350891 229351085 -52842579 + L1PB4 LINE L1 5961 6153 -3 4171 171 54 58 chr1 229351085 229351197 -52842467 - Charlie1a DNA MER1_type -1795 966 855 1985 155 3 0 chr1 229351197 229351494 -52842170 - AluJb SINE Alu -14 298 1 4171 171 54 58 chr1 229351494 229352049 -52841615 - Charlie1a DNA MER1_type -1906 855 302 969 228 4 45 chr1 229352217 229352463 -52841201 - Charlie1a DNA MER1_type -1215 240 5 2465 148 18 5 chr1 229352486 229353041 -52840623 - L1MA7 LINE L1 -3 6288 5621 388 229 22 34 chr1 229353050 229353229 -52840435 + Charlie2b DNA MER1_type 2570 2746 -36 433 253 54 83 chr1 229353637 229353845 -52839819 - L1ME4a LINE L1 -94 6027 5825 2244 123 0 0 chr1 229353845 229354155 -52839509 + AluSg SINE Alu 1 310 0 433 253 54 83 chr1 229354155 229354187 -52839477 - L1ME4a LINE L1 -296 5825 5794 324 351 48 12 chr1 229354199 229354367 -52839297 - L1ME4a LINE L1 -539 5582 5409 25 95 0 0 chr1 229354813 229354887 -52838777 + AT_rich Low_complexity Low_complexity 1 74 0 1838 152 31 17 chr1 229355057 229355347 -52838317 - AluSx SINE Alu -18 294 1 260 361 0 0 chr1 229355560 229355679 -52837985 - L1ME4a LINE L1 -2012 4134 4016 369 0 0 0 chr1 229356268 229356309 -52837355 + (TA)n Simple_repeat Simple_repeat 2 42 0 2165 120 3 40 chr1 229356483 229356833 -52836831 + MER1B DNA MER1_type 1 337 0 388 298 159 10 chr1 229357500 229357795 -52835869 - HAL1b LINE L1 -611 737 399 322 271 0 42 chr1 229358373 229358469 -52835195 + L1MC4 LINE L1 6614 6705 -1337 200 300 100 0 chr1 229358756 229358826 -52834838 + L2 LINE L2 3225 3301 -12 319 239 130 22 chr1 229360315 229360453 -52833211 + L1ME4a LINE L1 5967 6119 -2 270 0 0 0 chr1 229361167 229361197 -52832467 + (CA)n Simple_repeat Simple_repeat 1 30 0 482 336 65 18 chr1 229361457 229361686 -52831978 - MIR SINE MIR -3 259 20 758 225 65 40 chr1 229362928 229363128 -52830536 - MIR SINE MIR -24 238 34 2361 88 3 0 chr1 229363461 229363757 -52829907 + AluSg SINE Alu 3 299 -11 307 291 51 8 chr1 229364813 229364930 -52828734 - MIR3 SINE MIR -2 206 85 180 111 0 0 chr1 229367263 229367290 -52826374 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 226 308 158 33 chr1 229367292 229367412 -52826252 - L2 LINE L2 -17 3255 3121 205 348 100 60 chr1 229367842 229368092 -52825572 - L2 LINE L2 -376 2938 2679 2056 128 3 7 chr1 229368243 229368547 -52825117 + AluSx SINE Alu 1 303 -9 508 122 0 0 chr1 229368772 229368846 -52824818 + THE1C LTR MaLR 1 74 -301 1927 149 20 3 chr1 229369358 229369654 -52824010 - AluJb SINE Alu -11 301 1 556 288 108 19 chr1 229369733 229369945 -52823719 - MIR SINE MIR -12 250 20 733 317 18 5 chr1 229369968 229370192 -52823472 + MIR SINE MIR 23 249 -13 186 189 0 0 chr1 229370218 229370255 -52823409 + (TTA)n Simple_repeat Simple_repeat 1 37 0 341 265 17 51 chr1 229370280 229370397 -52823267 + L2 LINE L2 1707 1819 -1495 678 244 12 0 chr1 229370449 229370609 -52823055 + MLT1J2 LTR MaLR 3 164 -286 195 162 0 0 chr1 229370929 229370966 -52822698 + (CA)n Simple_repeat Simple_repeat 1 37 0 254 216 99 45 chr1 229370974 229371085 -52822579 + MLT1J1 LTR MaLR 328 444 -2 367 212 171 20 chr1 229371108 229371254 -52822410 + L2 LINE L2 1931 2098 -1216 545 258 119 10 chr1 229371259 229371453 -52822211 - MER58C DNA MER1_type 0 215 1 1396 292 128 23 chr1 229371469 229372172 -52821492 + L2 LINE L2 2115 2891 -423 1953 135 125 33 chr1 229372172 229372399 -52821265 + MSTA LTR MaLR 1 206 -222 2093 139 7 0 chr1 229372399 229372709 -52820955 + AluSx SINE Alu 1 312 0 1953 135 125 33 chr1 229372709 229372873 -52820791 + MSTA LTR MaLR 206 428 0 301 340 78 0 chr1 229373008 229373111 -52820553 + L2 LINE L2 3189 3299 -14 2089 143 129 8 chr1 229373394 229373773 -52819891 + MSTA LTR MaLR 4 428 0 197 330 222 13 chr1 229374196 229374426 -52819238 + L3b LINE CR1 1105 1382 -201 215 250 42 0 chr1 229374940 229374988 -52818676 - MIR SINE MIR -5 257 208 2682 126 9 53 chr1 229376968 229377267 -52816397 - L1P4 LINE L1 -433 5732 5422 2463 70 3 0 chr1 229377267 229377567 -52816097 - AluY SINE Alu -10 301 1 2682 126 9 53 chr1 229377567 229378025 -52815639 - L1P4 LINE L1 -743 5422 5007 256 268 0 78 chr1 229378365 229378457 -52815207 + L1ME3A LINE L1 5817 5896 -274 2275 92 34 0 chr1 229378457 229378752 -52814912 + AluSx SINE Alu 1 305 -7 256 268 0 78 chr1 229378752 229378801 -52814863 + L1ME3A LINE L1 5896 5947 -223 1520 176 95 15 chr1 229378883 229379219 -52814445 + MLT1A1 LTR MaLR 1 363 -2 495 141 0 0 chr1 229379274 229379352 -52814312 + AluSg/x SINE Alu 216 293 -16 728 142 0 0 chr1 229379510 229379630 -52814034 + AluSc SINE Alu 190 309 0 21 36 0 0 chr1 229379886 229379914 -52813750 + GC_rich Low_complexity Low_complexity 1 28 0 2711 82 38 90 chr1 229379965 229380467 -52813197 + SVA Other Other 393 868 -518 1469 141 5 0 chr1 229380621 229380827 -52812837 - AluSx SINE Alu -105 207 1 1839 221 82 95 chr1 229380907 229381204 -52812460 + MER21B LTR ERV1 17 317 -546 1714 175 0 49 chr1 229381204 229381529 -52812135 + AluJo SINE Alu 1 309 -3 1839 221 82 95 chr1 229381529 229381802 -52811862 + MER21B LTR ERV1 317 575 -288 2391 106 0 0 chr1 229381802 229382114 -52811550 + AluSx SINE Alu 1 312 0 1839 221 82 95 chr1 229382114 229382349 -52811315 + MER21B LTR ERV1 575 812 -51 249 311 148 30 chr1 229382563 229382698 -52810966 + MER5B DNA MER1_type 7 157 -21 608 202 8 8 chr1 229383378 229383497 -52810167 + FLAM_A SINE Alu 1 119 -14 323 293 242 0 chr1 229384075 229384273 -52809391 + L1ME4a LINE L1 5874 6119 -2 186 250 17 17 chr1 229384559 229384619 -52809045 - L2 LINE L2 -963 2351 2292 216 158 0 0 chr1 229384639 229384677 -52808987 + GA-rich Low_complexity Low_complexity 3 40 0 1131 166 23 23 chr1 229384844 229385061 -52808603 - MER20 DNA MER1_type 0 219 3 342 375 53 79 chr1 229385151 229385455 -52808209 - L2 LINE L2 -20 3252 2957 547 221 93 0 chr1 229386473 229386613 -52807051 - MIR SINE MIR -32 230 78 2345 108 0 6 chr1 229386696 229387011 -52806653 - AluSq SINE Alu 0 313 1 377 261 46 8 chr1 229387314 229387444 -52806220 + L2 LINE L2 2185 2319 -995 741 277 87 28 chr1 229387452 229387741 -52805923 + MLT1J1 LTR MaLR 16 321 -125 302 24 24 0 chr1 229387854 229387895 -52805769 - MADE1 DNA Mariner -38 42 1 228 259 207 22 chr1 229387895 229388030 -52805634 + L2 LINE L2 2313 2472 -842 2302 120 19 8 chr1 229388133 229388492 -52805172 + L1PA15 LINE L1 5790 6152 -13 23 33 0 0 chr1 229388839 229388869 -52804795 + AT_rich Low_complexity Low_complexity 1 30 0 1854 166 0 0 chr1 229389045 229389323 -52804341 + AluJb SINE Alu 11 288 -24 2319 97 3 0 chr1 229389481 229389779 -52803885 - AluSp SINE Alu -14 299 1 2171 123 7 0 chr1 229390904 229391206 -52802458 - AluSx SINE Alu -8 304 1 317 322 41 16 chr1 229391838 229391959 -52801705 + MIR SINE MIR 20 143 -65 939 285 117 13 chr1 229392345 229392720 -52800944 + L2 LINE L2 2149 2562 -752 375 78 0 0 chr1 229393467 229393518 -52800146 + (TTTC)n Simple_repeat Simple_repeat 4 54 0 1874 149 40 3 chr1 229393524 229393825 -52799839 - AluSx SINE Alu 0 312 1 1968 109 13 35 chr1 229393970 229394283 -52799381 - AluSx SINE Alu -6 306 1 27 0 0 0 chr1 229394285 229394312 -52799352 + AT_rich Low_complexity Low_complexity 1 27 0 239 288 8 38 chr1 229394616 229394748 -52798916 + CT-rich Low_complexity Low_complexity 2 129 0 636 293 140 51 chr1 229394752 229394924 -52798740 - L1ME3A LINE L1 -112 6058 5903 2211 117 3 0 chr1 229394924 229395231 -52798433 - AluSx SINE Alu -4 308 1 636 293 140 51 chr1 229395231 229395807 -52797857 - L1ME3A LINE L1 -267 5903 5258 268 188 0 3 chr1 229395808 229395858 -52797806 + AluJ/FRAM SINE Alu 228 270 -32 228 35 0 0 chr1 229395861 229395890 -52797774 + (CA)n Simple_repeat Simple_repeat 2 30 0 2117 88 3 11 chr1 229395953 229396284 -52797380 - AluSg SINE Alu 0 329 1 182 245 19 38 chr1 229397192 229397245 -52796419 - L3 LINE CR1 0 1577 1526 378 370 17 0 chr1 229397290 229397409 -52796255 - L2 LINE L2 -26 3246 3126 2248 103 0 17 chr1 229397418 229397719 -52795945 - AluSq SINE Alu -17 296 1 1993 140 16 22 chr1 229398059 229398373 -52795291 + AluSx SINE Alu 1 312 0 287 359 148 11 chr1 229398549 229398922 -52794742 - L2 LINE L2 -710 2604 2181 812 301 46 64 chr1 229398959 229399038 -52794626 + L1MEd LINE L1 6 85 -6034 2191 116 0 0 chr1 229399038 229399339 -52794325 + AluSc SINE Alu 4 304 -5 812 301 46 64 chr1 229399339 229399778 -52793886 + L1MEd LINE L1 85 515 -5604 721 200 7 0 chr1 229399788 229399928 -52793736 - L1ME1 LINE L1 -5 6161 6021 761 126 9 0 chr1 229399933 229400044 -52793620 + FLAM_C SINE Alu 5 116 -27 1706 153 21 63 chr1 229400083 229400228 -52793436 - L1ME1 LINE L1 -134 6032 5882 2097 120 0 10 chr1 229400228 229400527 -52793137 - AluSx SINE Alu -16 296 1 1706 153 21 63 chr1 229400527 229400759 -52792905 - L1ME1 LINE L1 -284 5882 5671 443 343 6 18 chr1 229400751 229400917 -52792747 + L1MEd LINE L1 500 663 -5456 * 405 258 60 40 chr1 229400923 229401225 -52792439 + L1MEd LINE L1 721 1028 -5091 337 189 0 0 chr1 229401227 229401280 -52792384 - Alu SINE Alu -247 53 1 195 100 0 0 chr1 229401323 229401353 -52792311 + (CA)n Simple_repeat Simple_repeat 2 31 0 2309 101 7 7 chr1 229401411 229401718 -52791946 + AluSx SINE Alu 1 307 -5 302 41 0 61 chr1 229401996 229402045 -52791619 + (CA)n Simple_repeat Simple_repeat 2 47 0 1647 164 18 105 chr1 229402216 229402607 -52791057 - MLT1A1 LTR MaLR -3 362 6 641 274 87 0 chr1 229402625 229402844 -52790820 + Charlie1 DNA MER1_type 2 239 -2522 408 165 24 0 chr1 229402830 229402915 -52790749 + Charlie1 DNA MER1_type 2622 2708 -53 * 2099 122 3 0 chr1 229403015 229403303 -52790361 - AluSq SINE Alu -24 289 1 679 220 0 15 chr1 229403306 229403438 -52790226 - FLAM_A SINE Alu -3 130 1 383 301 37 7 chr1 229403444 229403580 -52790084 + L2 LINE L2 2570 2709 -605 2102 132 3 0 chr1 229403649 229403953 -52789711 + AluSx SINE Alu 1 305 -7 1813 131 31 0 chr1 229403962 229404222 -52789442 + AluSx SINE Alu 1 268 -44 198 0 0 0 chr1 229404226 229404248 -52789416 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 592 303 10 24 chr1 229404601 229404809 -52788855 + MARNA DNA Mariner 363 567 -19 2115 120 10 17 chr1 229405108 229405408 -52788256 + AluSx SINE Alu 3 300 -12 813 204 0 36 chr1 229405482 229405649 -52788015 + AluJo SINE Alu 122 282 -30 2052 107 53 0 chr1 229405780 229406061 -52787603 - AluSc SINE Alu -12 297 2 1549 140 102 19 chr1 229406347 229406611 -52787053 - AluJb SINE Alu -17 295 10 828 143 8 0 chr1 229406706 229406825 -52786839 - FLAM_C SINE Alu -12 131 12 2437 82 0 0 chr1 229407136 229407442 -52786222 + AluSq SINE Alu 8 313 0 204 97 0 0 chr1 229407511 229407542 -52786122 + (CAT)n Simple_repeat Simple_repeat 2 32 0 245 204 0 0 chr1 229407792 229407841 -52785823 - L2 LINE L2 -2 3270 3222 2103 135 0 0 chr1 229407925 229408213 -52785451 + AluSq SINE Alu 1 288 -25 785 201 35 12 chr1 229408325 229408494 -52785170 + MIR SINE MIR 30 202 -60 604 89 0 0 chr1 229408494 229408573 -52785091 + AluS SINE Alu 2 80 -233 25 0 0 0 chr1 229408673 229408698 -52784966 + AT_rich Low_complexity Low_complexity 1 25 0 227 54 27 0 chr1 229408763 229408800 -52784864 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 44016 48 3 1 chr1 229408812 229414946 -52778718 - L1PA4 LINE L1 0 6155 11 1902 154 0 0 chr1 229415326 229415606 -52778058 - AluSx SINE Alu -32 280 1 2054 121 0 0 chr1 229415620 229415923 -52777741 - AluSx SINE Alu 0 303 1 354 148 0 0 chr1 229416019 229416073 -52777591 + U6 snRNA snRNA 5 58 -49 1812 135 0 75 chr1 229416176 229416495 -52777169 - AluJb SINE Alu -17 295 1 56 29 0 0 chr1 229417395 229417465 -52776199 + AT_rich Low_complexity Low_complexity 1 70 0 1866 149 7 7 chr1 229417959 229418255 -52775409 + AluSx SINE Alu 1 296 -16 1776 234 97 99 chr1 229418289 229418599 -52775065 + HAL1 LINE L1 206 515 -1992 2160 124 0 3 chr1 229418599 229418906 -52774758 + AluSx SINE Alu 1 306 -6 1776 234 97 99 chr1 229418906 229419463 -52774201 + HAL1 LINE L1 515 1073 -1434 1838 67 0 9 chr1 229419463 229419688 -52773976 - AluSc SINE Alu -16 293 71 1776 234 97 99 chr1 229419688 229419899 -52773765 + HAL1 LINE L1 1073 1283 -1224 1311 203 0 59 chr1 229419908 229420194 -52773470 + AluJo SINE Alu 18 286 -26 671 241 102 20 chr1 229420238 229420483 -52773181 + HAL1 LINE L1 1273 1537 -970 1043 185 37 27 chr1 229420527 229420617 -52773047 + L1M4 LINE L1 2955 3043 -3103 1810 184 7 3 chr1 229420617 229420926 -52772738 + AluJo SINE Alu 1 310 -2 1043 185 37 27 chr1 229420926 229421132 -52772532 + L1M4 LINE L1 3043 3254 -2892 821 206 12 42 chr1 229421383 229421548 -52772116 - FAM SINE Alu -18 167 8 1811 164 14 0 chr1 229422032 229422318 -52771346 + AluJo SINE Alu 1 290 -22 214 283 17 0 chr1 229422372 229422432 -52771232 + (TATG)n Simple_repeat Simple_repeat 2 62 0 220 188 42 0 chr1 229422483 229422531 -52771133 + (CATA)n Simple_repeat Simple_repeat 1 50 0 1453 158 40 29 chr1 229422638 229422910 -52770754 - AluJo SINE Alu -13 299 25 2342 72 7 0 chr1 229422925 229423238 -52770426 - AluY SINE Alu 0 315 1 2070 139 0 0 chr1 229423242 229423537 -52770127 - AluSx SINE Alu -17 295 1 2133 133 0 13 chr1 229423751 229424059 -52769605 - AluSx SINE Alu -8 304 1 24 53 0 0 chr1 229424196 229424234 -52769430 + AT_rich Low_complexity Low_complexity 1 38 0 324 329 61 43 chr1 229425303 229425580 -52768084 - L2 LINE L2 -780 2534 2253 1618 178 53 0 chr1 229425638 229425799 -52767865 - AluJo SINE Alu -16 296 112 201 39 0 0 chr1 229425799 229425825 -52767839 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 1618 178 53 0 chr1 229425825 229425944 -52767720 - AluJo SINE Alu -200 112 1 252 0 0 0 chr1 229426009 229426037 -52767627 + (A)n Simple_repeat Simple_repeat 1 28 0 6613 56 4 84 chr1 229426371 229427877 -52765787 + SVA Other Other 433 1386 0 324 314 29 22 chr1 229427967 229428104 -52765560 - L2 LINE L2 -15 3298 3161 1942 149 3 10 chr1 229428416 229428717 -52764947 + AluSx SINE Alu 1 299 -13 2047 133 43 0 chr1 229428730 229429030 -52764634 + AluSq SINE Alu 1 313 0 1068 164 18 0 chr1 229429144 229429315 -52764349 + MER58B DNA MER1_type 168 341 0 192 158 0 0 chr1 229429658 229429696 -52763968 + T-rich Low_complexity Low_complexity 1 38 0 3217 122 38 39 chr1 229429701 229430617 -52763047 + pTR5 LTR ERV1 745 2030 -408 351 209 12 0 chr1 229430624 229430710 -52762954 + LTR30 LTR ERV1 556 642 -80 1711 63 0 9 chr1 229430713 229430936 -52762728 + pTR5 LTR ERV1 172 392 -2046 1532 175 11 8 chr1 229430943 229431206 -52762458 - AluJb SINE Alu -44 268 5 1849 157 0 17 chr1 229431427 229431721 -52761943 + AluJo SINE Alu 1 289 -23 405 188 71 0 chr1 229431816 229431901 -52761763 + U13 snRNA snRNA 2 92 -12 1936 138 11 7 chr1 229431984 229432266 -52761398 + AluSx SINE Alu 1 283 -29 183 42 0 0 chr1 229432266 229432290 -52761374 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 391 302 24 0 chr1 229432322 229432448 -52761216 - MIR SINE MIR 0 262 134 255 234 0 16 chr1 229432470 229432534 -52761130 - L2 LINE L2 0 3272 3210 2118 147 0 3 chr1 229433264 229433571 -52760093 + AluSx SINE Alu 1 306 -6 1881 161 14 0 chr1 229433674 229433965 -52759699 - AluSx SINE Alu -13 299 5 284 235 0 37 chr1 229434383 229434464 -52759200 + MIR3 SINE MIR 122 199 -9 2165 105 6 35 chr1 229434492 229434807 -52758857 - AluSq SINE Alu -2 311 6 322 252 94 24 chr1 229435087 229435214 -52758450 + L2 LINE L2 3021 3156 -157 2229 101 10 10 chr1 229435215 229435523 -52758141 - AluSp SINE Alu -5 308 1 243 204 0 0 chr1 229435526 229435570 -52758094 - Alu SINE Alu -2 131 88 2404 141 47 0 chr1 229435670 229436053 -52757611 + MER57A LTR ERV1 3 403 0 306 247 91 79 chr1 229436573 229436680 -52756984 + MIR SINE MIR 37 148 -114 2211 103 3 19 chr1 229436680 229436990 -52756674 + AluSg SINE Alu 1 305 -5 306 247 91 79 chr1 229436990 229437058 -52756606 + MIR SINE MIR 148 214 -48 2190 96 0 13 chr1 229437092 229437393 -52756271 - L1PA12 LINE L1 -11 6157 5861 2821 74 15 28 chr1 229437394 229437608 -52756056 + L1PA13 LINE L1 5471 5679 -484 2207 123 3 0 chr1 229437608 229437910 -52755754 + AluY SINE Alu 1 303 -8 2821 74 15 28 chr1 229437910 229438089 -52755575 + L1PA13 LINE L1 5679 5859 -304 698 309 62 19 chr1 229438214 229438470 -52755194 + MLT1H LTR MaLR 22 288 -261 302 208 177 39 chr1 229438506 229438636 -52755028 + MLT1H LTR MaLR 375 522 -27 344 180 31 2 chr1 229438661 229438771 -52754893 - MER105 DNA DNA -46 158 15 25 31 0 0 chr1 229438896 229438928 -52754736 + AT_rich Low_complexity Low_complexity 1 32 0 1156 175 159 12 chr1 229438932 229439189 -52754475 + AluJo SINE Alu 1 295 -7 228 35 0 0 chr1 229439189 229439218 -52754446 + (TA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr1 229439478 229439506 -52754158 + AT_rich Low_complexity Low_complexity 1 28 0 2058 99 60 0 chr1 229439696 229439979 -52753685 + AluSx SINE Alu 1 300 -12 531 113 0 0 chr1 229440010 229440090 -52753574 + (TG)n Simple_repeat Simple_repeat 1 80 0 288 77 0 0 chr1 229440092 229440131 -52753533 + (TA)n Simple_repeat Simple_repeat 2 40 0 1958 105 23 56 chr1 229440201 229440506 -52753158 + AluSx SINE Alu 4 298 -14 343 324 0 0 chr1 229440535 229440678 -52752986 - L2 LINE L2 -301 2971 2831 1856 161 0 3 chr1 229440696 229441000 -52752664 + AluJb SINE Alu 1 303 -9 185 343 15 0 chr1 229441103 229441170 -52752494 - L2 LINE L2 -705 2609 2542 802 132 7 22 chr1 229441182 229441318 -52752346 - FLAM_C SINE Alu -5 138 5 2071 130 3 3 chr1 229441376 229441668 -52751996 + AluSx SINE Alu 1 292 -20 742 167 0 0 chr1 229441743 229441857 -52751807 + AluJb SINE Alu 172 285 -27 654 114 0 38 chr1 229441857 229442015 -52751649 + (TA)n Simple_repeat Simple_repeat 1 152 0 185 244 0 0 chr1 229442136 229442181 -52751483 + MIR SINE MIR 186 230 -32 880 142 0 8 chr1 229442252 229442386 -52751278 + FLAM_C SINE Alu 1 133 0 2282 107 0 0 chr1 229443585 229443884 -52749780 + AluSg SINE Alu 1 299 -11 918 291 84 22 chr1 229443893 229444299 -52749365 - LTR33 LTR ERVL -84 437 7 328 289 26 53 chr1 229445282 229445434 -52748230 + MLT1J2 LTR MaLR 83 230 -220 285 243 37 108 chr1 229445761 229445910 -52747754 + L1ME3A LINE L1 5777 5891 -279 2288 92 34 0 chr1 229445910 229446205 -52747459 + AluSx SINE Alu 1 305 -7 285 243 37 108 chr1 229446205 229446259 -52747405 + L1ME3A LINE L1 5891 5947 -223 1510 184 95 15 chr1 229446336 229446672 -52746992 + MLT1A1 LTR MaLR 1 363 -2 402 163 0 25 chr1 229446727 229446807 -52746857 + AluSg/x SINE Alu 219 296 -16 351 0 0 0 chr1 229447004 229447043 -52746621 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 252 178 0 148 chr1 229447055 229447083 -52746581 + L1M4 LINE L1 3304 3335 -2811 2059 131 6 13 chr1 229447083 229447396 -52746268 - AluSx SINE Alu -1 311 1 252 178 0 148 chr1 229447396 229447468 -52746196 + L1M4 LINE L1 3335 3389 -2757 21 0 0 0 chr1 229449398 229449419 -52744245 + AT_rich Low_complexity Low_complexity 1 21 0 8303 189 66 89 chr1 229450190 229451832 -52741832 + L1MD1 LINE L1 98 1777 -4763 2084 140 0 7 chr1 229451832 229452132 -52741532 - AluSx SINE Alu -14 298 1 8303 189 66 89 chr1 229452132 229452472 -52741192 + L1MD1 LINE L1 1777 2124 -4416 583 73 0 0 chr1 229452472 229452554 -52741110 - Alu SINE Alu -1 310 229 8303 189 66 89 chr1 229452554 229453375 -52740289 + L1MD1 LINE L1 2124 2998 -3542 763 194 0 0 chr1 229453375 229453509 -52740155 + AluJo SINE Alu 1 134 -178 8303 189 66 89 chr1 229453509 229454197 -52739467 + L1MD1 LINE L1 2998 3701 -2839 4610 129 9 10 chr1 229454199 229454984 -52738680 + L1PA13 LINE L1 5380 6163 0 2105 111 0 0 chr1 229455110 229455440 -52738224 + AluSg SINE Alu 2 331 0 414 233 94 6 chr1 229455448 229455607 -52738057 + L1MD1 LINE L1 3866 4038 -2502 389 171 29 0 chr1 229455607 229455677 -52737987 + MER72 LTR ERV1 587 658 -64 32 43 0 0 chr1 229455690 229455736 -52737928 + AT_rich Low_complexity Low_complexity 1 46 0 1453 174 9 109 chr1 229455798 229456137 -52737527 + AluJb SINE Alu 1 305 -7 2620 241 44 37 chr1 229456138 229457102 -52736562 + L1MD1 LINE L1 4128 5097 -1443 760 168 30 0 chr1 229457105 229457236 -52736428 + AluJo SINE Alu 135 269 -43 40 37 0 0 chr1 229457236 229457290 -52736374 + AT_rich Low_complexity Low_complexity 1 54 0 327 288 0 24 chr1 229457296 229457421 -52736243 + L1MD1 LINE L1 5089 5210 -1330 * 3369 189 75 9 chr1 229457412 229458250 -52735414 + L1MD1 LINE L1 5744 6636 0 1591 96 9 14 chr1 229458258 229458478 -52735186 + AluJo SINE Alu 84 302 -10 2416 73 24 0 chr1 229458706 229459047 -52734617 + L1MA2 LINE L1 5609 5957 -347 1789 100 39 50 chr1 229459047 229459327 -52734337 + AluSx SINE Alu 1 277 -35 255 31 0 0 chr1 229459328 229459360 -52734304 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 234 208 0 0 chr1 229459388 229459441 -52734223 + CT-rich Low_complexity Low_complexity 1 53 0 377 237 148 0 chr1 229459607 229459742 -52733922 - MIR SINE MIR -14 248 94 29 60 0 0 chr1 229459807 229459857 -52733807 + AT_rich Low_complexity Low_complexity 1 50 0 711 194 97 71 chr1 229460931 229461127 -52732537 - AluJo SINE Alu -21 291 91 50 42 0 0 chr1 229461290 229461361 -52732303 + AT_rich Low_complexity Low_complexity 1 71 0 1078 111 0 0 chr1 229461445 229461589 -52732075 - AluSg/x SINE Alu -11 299 156 2135 108 0 20 chr1 229462348 229462654 -52731010 + AluSq SINE Alu 1 300 -13 1821 150 45 0 chr1 229462732 229463018 -52730646 + AluSx SINE Alu 1 299 -13 704 277 89 16 chr1 229463230 229463533 -52730131 + L2 LINE L2 2384 2708 -606 307 288 15 0 chr1 229463730 229463796 -52729868 + L2 LINE L2 3162 3228 -44 425 328 152 20 chr1 229463830 229464126 -52729538 + L2 LINE L2 2937 3271 -1 189 279 49 0 chr1 229464235 229464296 -52729368 - L2 LINE L2 0 3272 3209 39 0 0 0 chr1 229464364 229464403 -52729261 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr1 229465118 229465146 -52728518 + AT_rich Low_complexity Low_complexity 1 28 0 1927 159 13 7 chr1 229465214 229465523 -52728141 + AluJb SINE Alu 1 311 -1 315 0 0 0 chr1 229466083 229466118 -52727546 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2170 122 6 13 chr1 229466127 229466439 -52727225 + AluSx SINE Alu 1 310 -2 1264 66 6 11 chr1 229466447 229466628 -52727036 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 979 200 64 106 chr1 229467552 229467675 -52725989 + MLT1B LTR MaLR 3 130 -260 2277 89 10 3 chr1 229467675 229467966 -52725698 + AluSq SINE Alu 1 293 -20 979 200 64 106 chr1 229467966 229468247 -52725417 + MLT1B LTR MaLR 130 390 0 697 171 0 8 chr1 229468346 229468463 -52725201 + FLAM_C SINE Alu 3 118 -25 4226 190 61 48 chr1 229468727 229469008 -52724656 - L1MD2 LINE L1 -2 6357 6081 1585 163 71 25 chr1 229469008 229469291 -52724373 + AluJo SINE Alu 1 296 -16 4226 190 61 48 chr1 229469291 229470485 -52723179 - L1MD2 LINE L1 -278 6081 4863 487 321 224 23 chr1 229470485 229470837 -52722827 - L2 LINE L2 -61 3252 2830 1250 229 7 39 chr1 229471391 229471697 -52721967 - AluJo SINE Alu -16 296 1 261 0 0 0 chr1 229471762 229471791 -52721873 + (A)n Simple_repeat Simple_repeat 1 29 0 350 344 144 10 chr1 229472396 229472591 -52721073 + L2 LINE L2 2854 3074 -198 728 188 8 0 chr1 229472651 229472779 -52720885 + AluJ SINE Alu 1 129 -173 333 283 0 22 chr1 229472812 229472904 -52720760 - L1MC4 LINE L1 -1339 6703 6614 1048 196 0 0 chr1 229472918 229473091 -52720573 + AluJ SINE Alu 125 297 -15 1069 82 0 92 chr1 229473129 229473192 -52720472 + L1PA8 LINE L1 6006 6073 -99 2423 84 0 19 chr1 229473192 229473502 -52720162 + AluSc SINE Alu 1 304 -5 1069 82 0 92 chr1 229473502 229473622 -52720042 + L1PA8 LINE L1 6073 6172 0 2044 139 0 7 chr1 229473627 229473957 -52719707 + AluSq SINE Alu 1 328 0 1315 220 35 15 chr1 229474559 229474900 -52718764 - MER87 LTR ERV1 0 541 194 1794 205 3 0 chr1 229475226 229475528 -52718136 + AluJo SINE Alu 1 303 -9 1962 132 0 0 chr1 229475599 229475865 -52717799 + AluSq SINE Alu 1 266 -47 845 136 14 7 chr1 229476580 229476750 -52716914 - AluJb SINE Alu 0 311 141 2319 43 0 11 chr1 229476752 229477030 -52716634 - AluY SINE Alu -12 299 25 411 137 0 0 chr1 229477037 229477110 -52716554 + (TA)n Simple_repeat Simple_repeat 2 74 0 10776 30 3 113 chr1 229477110 229478655 -52715009 - SVA Other Other -9 1377 2 201 46 15 77 chr1 229478660 229478725 -52714939 + (GGGAGA)n Simple_repeat Simple_repeat 1 61 0 677 209 0 8 chr1 229478731 229478865 -52714799 - AluJb SINE Alu -179 133 1 213 333 0 17 chr1 229479811 229479871 -52713793 - L2 LINE L2 -14 3299 3241 253 323 35 129 chr1 229479995 229480227 -52713437 - L2 LINE L2 -57 3215 3006 353 143 32 0 chr1 229480236 229480299 -52713365 + L1MC1 LINE L1 6258 6322 -11 672 125 0 0 chr1 229480304 229480400 -52713264 + AluS SINE Alu 2 97 -215 1411 160 19 35 chr1 229480928 229481184 -52712480 + AluJo SINE Alu 1 252 -60 21 0 0 0 chr1 229481753 229481774 -52711890 + AT_rich Low_complexity Low_complexity 1 21 0 887 161 81 0 chr1 229481966 229482115 -52711549 + MER21B LTR ERV1 328 488 -375 24 0 0 0 chr1 229482115 229482139 -52711525 + AT_rich Low_complexity Low_complexity 1 24 0 2904 6 0 0 chr1 229483146 229483459 -52710205 + AluYb8 SINE Alu 1 313 -5 2416 77 7 0 chr1 229483569 229483869 -52709795 + AluSp SINE Alu 1 302 -11 1855 128 59 35 chr1 229483926 229484215 -52709449 + AluSx SINE Alu 1 296 -16 206 376 43 11 chr1 229484619 229484712 -52708952 + MIR SINE MIR 2 97 -165 262 319 95 35 chr1 229484751 229484867 -52708797 - L2 LINE L2 -1 3312 3190 1958 106 0 8 chr1 229484869 229485124 -52708540 - AluSx SINE Alu -15 297 45 25 51 0 0 chr1 229485238 229485277 -52708387 + AT_rich Low_complexity Low_complexity 1 39 0 2045 132 0 35 chr1 229485431 229485742 -52707922 + AluSx SINE Alu 1 300 -12 2441 92 0 0 chr1 229487318 229487624 -52706040 - AluSx SINE Alu -6 306 1 2143 98 30 3 chr1 229488331 229488626 -52705038 - AluSx SINE Alu -9 303 1 1142 128 11 21 chr1 229488745 229488932 -52704732 - AluJo SINE Alu -9 303 119 820 176 28 6 chr1 229489313 229489495 -52704169 + MER53 DNA DNA 1 186 -3 977 168 0 36 chr1 229489497 229489664 -52704000 - AluJb SINE Alu -15 297 137 29 60 0 0 chr1 229489890 229489940 -52703724 + AT_rich Low_complexity Low_complexity 1 50 0 3411 108 25 4 chr1 229490307 229490836 -52702828 + L1PA13 LINE L1 5620 6159 -4 242 333 53 32 chr1 229491729 229491918 -52701746 - L2 LINE L2 -11 3302 3110 2221 110 0 0 chr1 229492237 229492529 -52701135 - AluSx SINE Alu -19 293 2 658 351 17 45 chr1 229492656 229492707 -52700957 - L2 LINE L2 -1139 2175 2124 1777 126 164 19 chr1 229492707 229493025 -52700639 - THE1B LTR MaLR 0 364 1 658 351 17 45 chr1 229493025 229493377 -52700287 - L2 LINE L2 -1190 2124 1783 5137 124 9 14 chr1 229493381 229494788 -52698876 - L1PA13 LINE L1 0 6163 4718 9990 176 11 29 chr1 229494788 229495276 -52698388 + L1P LINE L1 2544 3039 -3107 2448 51 0 0 chr1 229495276 229495572 -52698092 + AluY SINE Alu 1 296 -15 9990 176 11 29 chr1 229495572 229496233 -52697431 + L1P LINE L1 3039 3710 -2436 2033 125 0 74 chr1 229496233 229496370 -52697294 + AluSx SINE Alu 2 148 -164 1935 141 7 30 chr1 229496370 229496674 -52696990 + AluSx SINE Alu 1 297 -15 225 0 0 0 chr1 229496674 229496699 -52696965 + (TA)n Simple_repeat Simple_repeat 2 26 0 2033 125 0 74 chr1 229496699 229496896 -52696768 + AluSx SINE Alu 146 312 0 9990 176 11 29 chr1 229496896 229497526 -52696138 + L1P LINE L1 3710 4350 -1796 2035 154 0 3 chr1 229497526 229497837 -52695827 + AluSx SINE Alu 1 310 -2 9990 176 11 29 chr1 229497837 229498201 -52695463 + L1P LINE L1 4350 4651 -1495 1800 149 0 7 chr1 229498201 229498470 -52695194 + AluSx SINE Alu 36 302 -10 9990 176 11 29 chr1 229498470 229498555 -52695109 + L1P LINE L1 4651 4736 -1410 1643 189 10 10 chr1 229498697 229499004 -52694660 + AluJb SINE Alu 1 307 -5 2035 117 50 7 chr1 229499566 229499865 -52693799 - AluSq SINE Alu -1 312 1 22 0 0 0 chr1 229500120 229500142 -52693522 + AT_rich Low_complexity Low_complexity 1 22 0 189 293 0 35 chr1 229500787 229500845 -52692819 + L2 LINE L2 3000 3055 -217 868 144 0 0 chr1 229500866 229500984 -52692680 + FLAM_C SINE Alu 1 118 -15 2290 85 0 25 chr1 229501016 229501335 -52692329 + AluY SINE Alu 1 311 0 6265 119 9 6 chr1 229501336 229502238 -52691426 - HSMAR2 DNA Mariner 0 1302 398 225 254 42 14 chr1 229504156 229504227 -52689437 + L1ME LINE L1 5794 5866 -255 1469 197 60 4 chr1 229504941 229505210 -52688454 - AluJb SINE Alu -27 285 2 284 200 14 0 chr1 229505368 229505438 -52688226 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 2154 120 0 37 chr1 229507403 229507727 -52685937 - AluSx SINE Alu 0 312 1 2167 126 10 3 chr1 229508099 229508409 -52685255 + AluSx SINE Alu 1 312 0 310 269 31 39 chr1 229509193 229509323 -52684341 + MIR SINE MIR 123 251 -11 1630 188 35 0 chr1 229509393 229509680 -52683984 + AluJb SINE Alu 1 297 -15 390 301 102 21 chr1 229510266 229510502 -52683162 + MIR SINE MIR 2 256 -6 2170 113 13 0 chr1 229511173 229511474 -52682190 + AluSq SINE Alu 1 305 -8 1179 124 0 11 chr1 229511735 229511912 -52681752 + AluSg/x SINE Alu 137 311 -1 337 289 11 0 chr1 229512064 229512154 -52681510 + GA-rich Low_complexity Low_complexity 2 92 0 302 287 32 30 chr1 229512185 229512311 -52681353 + MIR SINE MIR 30 150 -69 186 43 0 0 chr1 229512597 229512620 -52681044 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2196 96 0 3 chr1 229512623 229512915 -52680749 - AluSx SINE Alu -19 293 3 3723 135 44 41 chr1 229512961 229513592 -52680072 - MER51A LTR ERV1 -1 633 1 2075 110 0 17 chr1 229514482 229514782 -52678882 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr1 229515349 229515378 -52678286 + AT_rich Low_complexity Low_complexity 1 29 0 318 291 55 45 chr1 229515391 229515501 -52678163 - L2 LINE L2 0 3313 3203 2040 152 3 3 chr1 229515766 229516076 -52677588 - AluJb SINE Alu -2 310 1 999 239 0 0 chr1 229516096 229516284 -52677380 + MER5A DNA MER1_type 1 188 -1 292 330 20 10 chr1 229517174 229517274 -52676390 + L2 LINE L2 3212 3312 -1 1564 199 3 14 chr1 229517310 229517606 -52676058 - AluJo SINE Alu -19 293 1 368 329 110 0 chr1 229517753 229517899 -52675765 + MIR3 SINE MIR 33 194 -14 831 203 10 76 chr1 229518204 229518401 -52675263 + MER63A DNA MER1_type 27 210 0 22 0 0 0 chr1 229518418 229518440 -52675224 + AT_rich Low_complexity Low_complexity 1 22 0 534 298 66 5 chr1 229518687 229518937 -52674727 + L2 LINE L2 2775 3035 -237 2213 103 3 0 chr1 229519314 229519605 -52674059 + AluSp SINE Alu 5 296 -17 680 272 100 16 chr1 229519605 229519914 -52673750 + L1ME LINE L1 5390 5724 -446 1833 145 0 69 chr1 229520106 229520424 -52673240 - AluSx SINE Alu -16 296 1 2051 119 0 39 chr1 229520744 229521055 -52672609 + AluSx SINE Alu 1 299 -13 4004 163 35 30 chr1 229521064 229521501 -52672163 + L1MB7 LINE L1 5393 5837 -347 2295 110 7 0 chr1 229521501 229521809 -52671855 + AluSq SINE Alu 1 310 -3 4004 163 35 30 chr1 229521809 229522143 -52671521 + L1MB7 LINE L1 5837 6168 -16 2050 146 10 0 chr1 229522942 229523237 -52670427 + AluJb SINE Alu 1 298 -14 2057 116 77 41 chr1 229523242 229523604 -52670060 - THE1C LTR MaLR 0 375 1 2172 120 7 3 chr1 229524557 229524866 -52668798 - AluSx SINE Alu -2 310 1 2067 138 0 7 chr1 229525151 229525447 -52668217 - AluSx SINE Alu -18 294 1 205 189 19 57 chr1 229525486 229525539 -52668125 + L2 LINE L2 3263 3313 0 383 244 7 104 chr1 229526075 229526210 -52667454 - MIR SINE MIR -18 244 123 29 37 0 19 chr1 229526226 229526247 -52667417 + AT_rich Low_complexity Low_complexity 1 21 -32 5767 119 8 12 chr1 229526247 229527096 -52666568 + L1MA5A LINE L1 5448 6293 -4 29 37 0 19 chr1 229527096 229527128 -52666536 + AT_rich Low_complexity Low_complexity 21 53 0 268 341 93 8 chr1 229527130 229527259 -52666405 - MIR SINE MIR -121 141 2 2291 125 0 0 chr1 229527278 229527589 -52666075 - AluSx SINE Alu -1 311 1 191 355 51 36 chr1 229527786 229527924 -52665740 + L2 LINE L2 2945 3084 -188 21 82 0 0 chr1 229580084 229580133 -52613531 + GC_rich Low_complexity Low_complexity 1 49 0 1537 162 24 61 chr1 229582092 229582417 -52611247 + AluJb SINE Alu 1 314 0 2373 111 0 3 chr1 229582442 229582749 -52610915 - AluSq SINE Alu -6 307 2 196 321 153 8 chr1 229583593 229583724 -52609940 - MIR SINE MIR -93 169 20 279 0 0 0 chr1 229585654 229585685 -52607979 + (T)n Simple_repeat Simple_repeat 1 31 0 228 271 17 0 chr1 229589676 229589735 -52603929 + (CGGGG)n Simple_repeat Simple_repeat 1 60 0 206 279 0 25 chr1 229589833 229589912 -52603752 + C-rich Low_complexity Low_complexity 6 82 0 305 267 11 11 chr1 229589998 229590088 -52603576 + GA-rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr1 229590740 229590761 -52602903 + GC_rich Low_complexity Low_complexity 1 21 0 200 208 170 0 chr1 229592569 229592622 -52601042 + MER5B DNA MER1_type 13 74 -104 30 0 0 0 chr1 229595295 229595325 -52598339 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr1 229595632 229595669 -52597995 + AT_rich Low_complexity Low_complexity 1 37 0 2461 82 0 7 chr1 229598445 229598750 -52594914 - AluSq SINE Alu -5 308 6 24 0 0 0 chr1 229600401 229600425 -52593239 + AT_rich Low_complexity Low_complexity 1 24 0 188 304 14 14 chr1 229601245 229601314 -52592350 + MIR SINE MIR 70 138 -124 2287 80 0 3 chr1 229601486 229601792 -52591872 + AluSp SINE Alu 1 305 0 25 0 0 0 chr1 229602064 229602089 -52591575 + AT_rich Low_complexity Low_complexity 1 25 0 331 250 26 0 chr1 229602715 229602791 -52590873 + MER112 DNA MER1_type 3 80 -180 707 174 29 92 chr1 229602822 229603029 -52590635 + MER112 DNA MER1_type 67 260 0 818 148 0 8 chr1 229603241 229603363 -52590301 - FLAM_C SINE Alu -19 124 4 2432 62 3 0 chr1 229603529 229603820 -52589844 - AluY SINE Alu -19 292 1 572 241 51 22 chr1 229604259 229604396 -52589268 - MIR3 SINE MIR -21 187 47 375 23 0 0 chr1 229604444 229604488 -52589176 + (CA)n Simple_repeat Simple_repeat 1 44 0 524 174 31 10 chr1 229604943 229605041 -52588623 + U6 snRNA snRNA 3 102 -5 1868 155 10 0 chr1 229605783 229606073 -52587591 - AluJo SINE Alu -18 294 2 2172 90 28 3 chr1 229606081 229606369 -52587295 - AluSp SINE Alu -18 295 1 411 229 37 0 chr1 229607317 229607426 -52586238 - L1ME1 LINE L1 -113 6053 5941 2217 109 0 7 chr1 229608359 229608661 -52585003 - AluSx SINE Alu -12 300 1 2263 127 0 0 chr1 229608671 229608978 -52584686 - AluSq SINE Alu -6 307 1 2177 110 10 0 chr1 229609357 229609658 -52584006 - AluSx SINE Alu -8 304 1 2157 113 0 0 chr1 229609710 229609994 -52583670 + AluSx SINE Alu 4 287 -25 183 129 0 0 chr1 229610506 229610537 -52583127 + (CA)n Simple_repeat Simple_repeat 2 32 0 2072 112 0 59 chr1 229611701 229612022 -52581642 + AluSg SINE Alu 1 302 -8 2373 99 3 0 chr1 229612155 229612457 -52581207 - AluSp SINE Alu -10 303 1 330 98 0 0 chr1 229613107 229613158 -52580506 + (TG)n Simple_repeat Simple_repeat 2 52 0 2241 102 0 7 chr1 229613910 229614205 -52579459 - AluSg SINE Alu -17 293 1 1130 67 0 0 chr1 229614205 229614339 -52579325 - AluSg SINE Alu -176 134 1 258 338 0 13 chr1 229614684 229614761 -52578903 - L2 LINE L2 0 3313 3238 2123 106 0 0 chr1 229614770 229615045 -52578619 + AluSx SINE Alu 23 297 -15 199 369 141 0 chr1 229615313 229615511 -52578153 - L2 LINE L2 -358 2956 2731 189 0 0 0 chr1 229615826 229615847 -52577817 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 823 161 0 0 chr1 229615847 229615965 -52577699 - FLAM_C SINE Alu -24 119 2 2089 125 13 13 chr1 229616012 229616324 -52577340 - AluSx SINE Alu 0 312 1 188 306 0 0 chr1 229616464 229616513 -52577151 + MER5A DNA MER1_type 53 101 -88 257 259 0 0 chr1 229616530 229616588 -52577076 - L2 LINE L2 0 3313 3256 830 307 139 24 chr1 229616588 229617228 -52576436 - L2 LINE L2 -199 3114 2397 306 324 63 77 chr1 229617330 229617470 -52576194 - L3b LINE CR1 -42 1541 1401 2045 121 35 0 chr1 229617470 229617759 -52575905 - AluSx SINE Alu -13 299 1 306 324 63 77 chr1 229617759 229617917 -52575747 - L3b LINE CR1 -182 1401 1247 2468 91 19 30 chr1 229618022 229618157 -52575507 + L1PA14 LINE L1 5802 5937 -224 2207 100 3 0 chr1 229618157 229618447 -52575217 + AluSp SINE Alu 2 292 -21 2468 91 19 30 chr1 229618447 229618672 -52574992 + L1PA14 LINE L1 5937 6158 -3 248 307 27 0 chr1 229619429 229619504 -52574160 - MER69 DNA AcHobo 0 2526 2450 * 583 192 34 27 chr1 229619501 229619647 -52574017 - MER69 DNA AcHobo -2379 147 1 2100 139 24 0 chr1 229620140 229620435 -52573229 - AluSp SINE Alu -11 302 1 1653 181 35 0 chr1 229621289 229621576 -52572088 + AluJb SINE Alu 1 297 -15 217 338 29 0 chr1 229624043 229624111 -52569553 + MIR SINE MIR 37 106 -102 429 176 0 0 chr1 229624113 229624221 -52569443 + (TA)n Simple_repeat Simple_repeat 2 109 0 1543 152 129 29 chr1 229624255 229624564 -52569100 + MER2 DNA MER2_type 6 345 0 275 71 24 0 chr1 229624566 229624608 -52569056 + (CA)n Simple_repeat Simple_repeat 2 44 0 381 290 57 93 chr1 229624632 229624911 -52568753 - L2 LINE L2 0 3272 3004 622 116 215 41 chr1 229625183 229625304 -52568360 + FLAM_C SINE Alu 2 143 0 2457 76 0 0 chr1 229625337 229625638 -52568026 + AluY SINE Alu 1 301 -10 21 0 0 0 chr1 229625665 229625686 -52567978 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 229627777 229627808 -52565856 + AT_rich Low_complexity Low_complexity 1 31 0 383 130 52 26 chr1 229628263 229628313 -52565351 - MADE1 DNA Mariner 0 80 26 2281 108 0 0 chr1 229628313 229628618 -52565046 + AluSx SINE Alu 1 305 -7 383 130 52 26 chr1 229628618 229628644 -52565020 - MADE1 DNA Mariner -54 26 2 22 35 0 0 chr1 229634113 229634142 -52559522 + AT_rich Low_complexity Low_complexity 1 29 0 206 194 32 48 chr1 229634503 229634567 -52559097 + (CAGTA)n Simple_repeat Simple_repeat 1 65 -320 2160 103 7 0 chr1 229634567 229634887 -52558777 + AluSp SINE Alu 2 323 0 206 194 32 48 chr1 229634887 229634895 -52558769 + (CAGTA)n Simple_repeat Simple_repeat 65 385 0 306 353 26 9 chr1 229634934 229635050 -52558614 - L2 LINE L2 -1 3312 3195 264 270 161 15 chr1 229636039 229636176 -52557488 + MIR SINE MIR 100 256 -6 204 125 0 0 chr1 229636541 229636573 -52557091 + (A)n Simple_repeat Simple_repeat 1 32 0 2238 101 7 0 chr1 229637183 229637480 -52556184 - AluSp SINE Alu -14 299 1 2022 135 10 0 chr1 229637635 229637932 -52555732 + AluSx SINE Alu 1 300 -12 234 0 0 0 chr1 229638120 229638146 -52555518 + (CA)n Simple_repeat Simple_repeat 2 27 0 2223 96 0 3 chr1 229638282 229638573 -52555091 - AluY SINE Alu -21 290 1 2066 142 3 16 chr1 229638613 229638929 -52554735 - AluSx SINE Alu 0 312 1 737 180 7 36 chr1 229638943 229639082 -52554582 - AluJo SINE Alu -176 136 2 236 51 0 26 chr1 229639085 229639124 -52554540 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2080 96 4 0 chr1 229639164 229639435 -52554229 - AluSp SINE Alu -41 272 1 835 114 0 24 chr1 229640080 229640232 -52553432 - AluSx SINE Alu 0 313 165 693 137 39 0 chr1 229640232 229640334 -52553330 - AluSx SINE Alu -205 107 2 1927 148 3 0 chr1 229640351 229640648 -52553016 - AluSx SINE Alu -14 298 1 329 231 64 0 chr1 229641147 229641225 -52552439 - Charlie1 DNA MER1_type 0 2761 2679 688 208 104 0 chr1 229641264 229641418 -52552246 - Charlie1 DNA MER1_type -2540 221 52 314 290 92 51 chr1 229642117 229642334 -52551330 - MIR SINE MIR 0 262 37 2316 106 0 3 chr1 229642359 229642661 -52551003 - AluSc SINE Alu -8 301 1 426 245 211 7 chr1 229642798 229642945 -52550719 + MER5A DNA MER1_type 10 186 -3 2316 79 0 67 chr1 229643752 229644082 -52549582 - AluSg SINE Alu -2 308 1 2221 82 0 46 chr1 229644753 229645057 -52548607 + AluSg SINE Alu 1 290 -20 1652 209 0 0 chr1 229645061 229645363 -52548301 - AluSx SINE Alu -10 302 1 2582 58 0 0 chr1 229645403 229645711 -52547953 - AluY SINE Alu -3 308 1 851 197 13 26 chr1 229646020 229646172 -52547492 - FRAM SINE Alu -35 141 1 2280 83 3 0 chr1 229646439 229646729 -52546935 - AluY SINE Alu -20 291 1 23 0 0 0 chr1 229646735 229646758 -52546906 + AT_rich Low_complexity Low_complexity 1 23 0 1865 136 44 0 chr1 229646970 229647265 -52546399 - AluSx SINE Alu 0 307 1 1759 164 85 6 chr1 229647564 229647882 -52545782 + MER7A DNA MER2_type 4 344 -2 23 0 0 0 chr1 229649330 229649353 -52544311 + AT_rich Low_complexity Low_complexity 1 23 0 452 277 82 25 chr1 229649408 229649567 -52544097 + MIR3 SINE MIR 20 187 -21 231 234 0 0 chr1 229649561 229649608 -52544056 - L2 LINE L2 -3 3310 3264 * 2348 99 0 3 chr1 229650464 229650768 -52542896 - AluSc SINE Alu -6 303 1 199 317 64 25 chr1 229651282 229651394 -52542270 - MIR3 SINE MIR -109 99 2 838 174 9 99 chr1 229653843 229653999 -52539665 + MIR SINE MIR 53 187 -75 2201 108 10 3 chr1 229653999 229654296 -52539368 - AluSg SINE Alu -11 299 1 838 174 9 99 chr1 229654296 229654352 -52539312 + MIR SINE MIR 187 246 -16 21 0 0 0 chr1 229654499 229654520 -52539144 + AT_rich Low_complexity Low_complexity 1 21 0 2356 119 0 0 chr1 229655528 229655839 -52537825 - AluSx SINE Alu -1 311 1 1685 187 3 10 chr1 229655839 229656138 -52537526 - AluJb SINE Alu -15 297 1 416 313 47 71 chr1 229656227 229656438 -52537226 + L2 LINE L2 3029 3234 -38 1143 206 5 5 chr1 229656546 229656765 -52536899 + AluJo SINE Alu 1 219 -93 2300 91 0 3 chr1 229656943 229657241 -52536423 - AluSg SINE Alu -13 297 1 237 268 152 51 chr1 229658152 229658290 -52535374 - L2 LINE L2 -1 3312 3161 2016 122 31 0 chr1 229658524 229658812 -52534852 - AluSx SINE Alu -15 297 1 288 0 0 0 chr1 229658963 229658995 -52534669 + (TG)n Simple_repeat Simple_repeat 2 33 0 1501 168 65 4 chr1 229658995 229659257 -52534407 - AluJo SINE Alu -34 278 1 202 256 0 0 chr1 229659316 229659359 -52534305 + MIR SINE MIR 110 152 -110 309 347 41 27 chr1 229659915 229660062 -52533602 + L2 LINE L2 3121 3269 -3 295 258 31 41 chr1 229660316 229660413 -52533251 - MIR SINE MIR -117 145 50 2234 120 0 0 chr1 229660652 229660944 -52532720 - AluSx SINE Alu -20 292 1 216 366 28 14 chr1 229660951 229661093 -52532571 + MIR SINE MIR 89 232 -30 346 231 0 65 chr1 229661355 229661463 -52532201 - MIR SINE MIR -71 191 91 583 284 21 118 chr1 229662755 229663188 -52530476 - L2 LINE L2 -1 3312 2922 2178 118 0 7 chr1 229664778 229665084 -52528580 + AluSx SINE Alu 1 304 -8 358 231 88 0 chr1 229665092 229665183 -52528481 - L1MC4 LINE L1 -1330 6712 6614 361 371 17 6 chr1 229665352 229665530 -52528134 + MIR SINE MIR 32 211 -51 628 284 23 17 chr1 229665588 229665764 -52527900 - MIR SINE MIR -85 177 1 2187 92 3 0 chr1 229668590 229668897 -52524767 - AluSq SINE Alu 0 308 1 2307 106 7 0 chr1 229668897 229669199 -52524465 - AluSx SINE Alu -6 306 3 265 299 143 19 chr1 229669315 229669469 -52524195 - MIR3 SINE MIR -9 199 27 21 0 0 0 chr1 229670220 229670241 -52523423 + AT_rich Low_complexity Low_complexity 1 21 0 2035 91 66 0 chr1 229670519 229670793 -52522871 - AluSx SINE Alu -20 292 1 31 26 0 0 chr1 229670982 229671020 -52522644 + AT_rich Low_complexity Low_complexity 1 38 0 714 151 8 17 chr1 229671460 229671579 -52522085 + FLAM_C SINE Alu 1 118 -15 195 358 58 8 chr1 229674211 229674331 -52519333 - L2 LINE L2 -306 2966 2841 349 231 125 0 chr1 229674369 229674473 -52519191 - L2 LINE L2 -4 3309 3193 230 122 20 20 chr1 229674610 229674659 -52519005 + T-rich Low_complexity Low_complexity 5 53 0 2345 91 0 7 chr1 229674691 229674988 -52518676 - AluSp SINE Alu -18 295 1 263 237 0 17 chr1 229675477 229675536 -52518128 + L2 LINE L2 3215 3272 0 1314 174 143 11 chr1 229675541 229675806 -52517858 + AluJo SINE Alu 1 300 -2 1790 160 13 16 chr1 229676720 229677032 -52516632 - AluJo SINE Alu -1 311 1 222 226 301 0 chr1 229677275 229677368 -52516296 + L2 LINE L2 3192 3312 -1 747 102 87 39 chr1 229677571 229677698 -52515966 - FLAM_C SINE Alu 0 133 1 210 337 102 18 chr1 229677740 229677906 -52515758 + L3b LINE CR1 1299 1478 -105 339 147 15 44 chr1 229678145 229678213 -52515451 + Tigger2 DNA MER2_type 6 71 -2647 755 215 0 70 chr1 229678246 229678277 -52515387 - MER8 DNA MER2_type -66 173 141 2294 114 0 0 chr1 229678277 229678575 -52515089 + AluSx SINE Alu 1 298 -14 360 0 0 0 chr1 229678575 229678615 -52515049 + (TA)n Simple_repeat Simple_repeat 2 41 0 755 215 0 70 chr1 229678615 229678768 -52514896 - MER8 DNA MER2_type -96 143 1 180 0 0 0 chr1 229678783 229678803 -52514861 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1354 191 8 4 chr1 229678969 229679205 -52514459 + MER8 DNA MER2_type 3 239 0 192 77 0 0 chr1 229680133 229680159 -52513505 + (CA)n Simple_repeat Simple_repeat 2 27 0 234 91 0 0 chr1 229681162 229681195 -52512469 + (GAA)n Simple_repeat Simple_repeat 1 33 0 2097 125 17 0 chr1 229682885 229683174 -52510490 - AluSq SINE Alu -18 295 2 244 368 105 20 chr1 229683764 229683916 -52509748 - MIR3 SINE MIR -8 200 36 234 265 0 0 chr1 229684329 229684378 -52509286 + Tigger3b DNA MER2_type 1 49 -1182 326 274 24 0 chr1 229684378 229684462 -52509202 - L1MC4 LINE L1 -1342 6700 6615 185 94 31 0 chr1 229684476 229684508 -52509156 + (TA)n Simple_repeat Simple_repeat 1 33 0 271 79 0 0 chr1 229684525 229684563 -52509101 + Tigger3b DNA MER2_type 65 102 -1129 * 4860 125 84 8 chr1 229684561 229685131 -52508533 + Tigger3b DNA MER2_type 274 938 -2090 203 61 30 0 chr1 229685131 229685164 -52508500 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 4860 125 84 8 chr1 229685164 229685483 -52508181 + Tigger3b DNA MER2_type 938 1231 0 846 211 66 0 chr1 229685623 229685836 -52507828 - L1MB3 LINE L1 0 6419 6193 2312 116 0 0 chr1 229686087 229686398 -52507266 + AluSx SINE Alu 1 311 -1 350 274 82 7 chr1 229686533 229686668 -52506996 + MIR SINE MIR 118 262 0 744 133 0 0 chr1 229687061 229687174 -52506490 - AluSg/x SINE Alu -6 304 192 294 353 65 18 chr1 229687324 229687494 -52506170 - MIR SINE MIR -74 188 11 977 197 0 6 chr1 229687812 229687990 -52505674 - AluJ SINE Alu -6 306 130 207 0 0 0 chr1 229687992 229688015 -52505649 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2021 124 0 50 chr1 229688015 229688314 -52505350 - AluSx SINE Alu -28 284 1 248 218 13 26 chr1 229688920 229688998 -52504666 - L1MB3 LINE L1 -1992 6052 5976 407 250 47 60 chr1 229689091 229689263 -52504401 - L1MB3 LINE L1 -532 5827 5614 864 292 49 37 chr1 229689267 229690003 -52503661 - L1MB3 LINE L1 -997 5385 4641 333 347 91 0 chr1 229690056 229690232 -52503432 - L1MB3 LINE L1 -1824 4558 4367 312 285 53 72 chr1 229690399 229690527 -52503137 - L1MB3 LINE L1 -2986 3396 3272 207 0 0 0 chr1 229690527 229690550 -52503114 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 312 285 53 72 chr1 229690550 229690628 -52503036 - L1MB3 LINE L1 -3110 3272 3194 428 208 100 31 chr1 229690642 229690772 -52502892 + MER91C DNA MER1_type 1 139 -1 309 255 27 150 chr1 229691030 229691092 -52502572 - L1MB3 LINE L1 -3706 2676 2608 893 143 0 0 chr1 229691092 229691225 -52502439 - AluJ SINE Alu -169 133 1 309 255 27 150 chr1 229691225 229691456 -52502208 - L1MB3 LINE L1 -3774 2608 2419 2908 171 51 57 chr1 229691456 229691597 -52502067 - L1MD2 LINE L1 -10 6349 6209 2133 129 3 0 chr1 229691597 229691900 -52501764 + AluSp SINE Alu 1 304 -9 2908 171 51 57 chr1 229691900 229692529 -52501135 - L1MD2 LINE L1 -150 6209 5589 321 309 37 49 chr1 229692549 229692711 -52500953 - L1MB3 LINE L1 -4684 1851 1541 2382 88 7 0 chr1 229693030 229693336 -52500328 - AluSg SINE Alu -2 308 1 29 28 0 0 chr1 229693346 229693382 -52500282 + AT_rich Low_complexity Low_complexity 1 36 0 901 199 0 0 chr1 229693383 229693534 -52500130 - FRAM SINE Alu -26 150 1 222 37 0 0 chr1 229693875 229693902 -52499762 + (TG)n Simple_repeat Simple_repeat 1 27 0 2416 70 7 0 chr1 229694479 229694778 -52498886 - AluSg SINE Alu -9 301 1 378 0 0 0 chr1 229695061 229695103 -52498561 + (CA)n Simple_repeat Simple_repeat 1 42 0 340 237 112 46 chr1 229695520 229695672 -52497992 - MIR SINE MIR -14 248 87 * 405 295 25 25 chr1 229695657 229695779 -52497885 + MER5A DNA MER1_type 40 161 -28 2227 94 7 0 chr1 229695861 229696148 -52497516 + AluSg SINE Alu 1 289 -21 261 0 0 0 chr1 229696300 229696329 -52497335 + (TG)n Simple_repeat Simple_repeat 2 30 0 281 212 47 24 chr1 229696344 229696429 -52497235 + Charlie8 DNA MER1_type 87 173 -2244 937 144 27 7 chr1 229696453 229696599 -52497065 - FRAM SINE Alu -23 153 5 24 53 0 0 chr1 229696858 229696896 -52496768 + AT_rich Low_complexity Low_complexity 1 38 0 24 67 0 0 chr1 229697410 229697455 -52496209 + AT_rich Low_complexity Low_complexity 1 45 0 201 291 13 38 chr1 229698239 229698318 -52495346 + L2 LINE L2 3122 3198 -74 2134 134 7 0 chr1 229699710 229700015 -52493649 - AluSx SINE Alu -5 307 1 279 71 0 0 chr1 229700845 229700887 -52492777 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 243 284 25 12 chr1 229704564 229704645 -52489019 + GA-rich Low_complexity Low_complexity 5 86 0 677 231 0 8 chr1 229705376 229705506 -52488158 + FLAM_A SINE Alu 1 129 -4 331 148 9 42 chr1 229705984 229706085 -52487579 - L1MA2 LINE L1 -39 6265 6170 22 0 0 0 chr1 229706170 229706192 -52487472 + AT_rich Low_complexity Low_complexity 1 22 0 2220 92 14 0 chr1 229706484 229706776 -52486888 - AluSx SINE Alu -16 296 1 2233 102 21 27 chr1 229707130 229707212 -52486452 + MER47A DNA MER2_type 33 114 -2209 2305 76 0 3 chr1 229707212 229707500 -52486164 - AluSg SINE Alu -23 287 1 2233 102 21 27 chr1 229707500 229707752 -52485912 + MER47A DNA MER2_type 114 365 -1 204 284 63 11 chr1 229707948 229708043 -52485621 - MIR SINE MIR -92 170 71 601 127 0 0 chr1 229709408 229709487 -52484177 - AluSg/x SINE Alu -21 289 211 1472 159 84 68 chr1 229709702 229709998 -52483666 - AluJo SINE Alu -1 301 1 2148 112 0 3 chr1 229710444 229710756 -52482908 - AluSx SINE Alu 0 311 1 201 371 36 21 chr1 229712656 229712796 -52480868 - L2 LINE L2 -8 3305 3164 531 319 135 31 chr1 229712899 229713187 -52480477 - L2 LINE L2 0 3272 2955 562 283 114 71 chr1 229713278 229713744 -52479920 - L2 LINE L2 -539 2775 2290 270 136 0 0 chr1 229714069 229714113 -52479551 + (A)n Simple_repeat Simple_repeat 1 44 0 380 231 43 51 chr1 229714155 229714272 -52479392 - L2 LINE L2 -17 3296 3181 1972 151 7 0 chr1 229714278 229714583 -52479081 - AluJb SINE Alu -5 307 1 2307 144 40 38 chr1 229714681 229715105 -52478559 + MSTA LTR MaLR 1 425 -3 1169 151 64 44 chr1 229715262 229715283 -52478381 - L1MB2 LINE L1 -19 6164 6145 300 154 0 0 chr1 229715283 229715335 -52478329 - L1MB3 LINE L1 -5 6178 6127 3852 141 16 57 chr1 229715342 229715353 -52478311 - L1MC1 LINE L1 -2 6331 6321 2279 114 0 0 chr1 229715353 229715651 -52478013 - AluSx SINE Alu -14 298 1 3852 141 16 57 chr1 229715651 229715671 -52477993 - L1MC1 LINE L1 -12 6321 6302 2543 81 0 3 chr1 229715671 229715980 -52477684 - AluSx SINE Alu -4 308 1 3852 141 16 57 chr1 229715980 229716647 -52477017 - L1MC1 LINE L1 -31 6302 5661 1169 151 64 44 chr1 229716647 229716913 -52476751 - L1MB2 LINE L1 -43 6140 5859 530 319 35 31 chr1 229717496 229717722 -52475942 + MIR SINE MIR 15 241 -21 827 291 115 59 chr1 229717865 229718456 -52475208 + L2 LINE L2 2157 2780 -534 265 328 46 46 chr1 229718572 229718746 -52474918 + L2 LINE L2 2914 3087 -185 285 29 0 0 chr1 229718841 229718875 -52474789 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1477 139 12 40 chr1 229719014 229719266 -52474398 - AluJo SINE Alu -13 299 55 749 140 0 91 chr1 229719886 229720029 -52473635 + FRAM SINE Alu 28 157 -19 37 39 0 0 chr1 229720035 229720086 -52473578 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr1 229720903 229720926 -52472738 + AT_rich Low_complexity Low_complexity 1 23 0 2202 126 3 0 chr1 229722271 229722572 -52471092 + AluSx SINE Alu 1 302 -10 30 59 0 0 chr1 229723083 229723134 -52470530 + AT_rich Low_complexity Low_complexity 1 51 0 757 167 0 36 chr1 229727464 229727602 -52466062 - FLAM_A SINE Alu 0 133 1 382 223 10 48 chr1 229728583 229728686 -52464978 - MIR SINE MIR -163 99 1 2385 75 10 0 chr1 229728733 229729026 -52464638 + AluSp SINE Alu 1 296 -17 180 0 0 0 chr1 229729482 229729502 -52464162 + (TTTTTA)n Simple_repeat Simple_repeat 4 23 0 1619 173 11 0 chr1 229729502 229729762 -52463902 - AluJb SINE Alu -49 263 1 322 219 29 48 chr1 229729890 229729995 -52463669 - L1ME3 LINE L1 -18 6144 6042 286 355 70 18 chr1 229731234 229731561 -52462103 + L2 LINE L2 2586 2929 -385 204 274 153 58 chr1 229731616 229731806 -52461858 + L2 LINE L2 3037 3244 -28 529 283 134 28 chr1 229732117 229732400 -52461264 + L3 LINE CR1 1263 1575 -2 2289 125 0 0 chr1 229732928 229733240 -52460424 + AluSx SINE Alu 1 312 0 27 29 0 0 chr1 229733281 229733315 -52460349 + AT_rich Low_complexity Low_complexity 1 34 0 541 265 160 50 chr1 229733489 229733918 -52459746 + MLT1J LTR MaLR 1 486 -8 363 260 198 51 chr1 229733925 229734102 -52459562 - MIR SINE MIR -59 203 1 2246 124 0 6 chr1 229734188 229734502 -52459162 + AluSx SINE Alu 1 312 0 1629 176 0 31 chr1 229735331 229735620 -52458044 - AluJb SINE Alu -15 297 18 45471 37 1 1 chr1 229736163 229742355 -52451309 + L1PA4 LINE L1 3 6194 0 2184 125 3 3 chr1 229742475 229742787 -52450877 + AluSq SINE Alu 1 312 -1 2287 114 3 0 chr1 229743255 229743562 -52450102 + AluSp SINE Alu 1 308 -5 559 222 105 19 chr1 229745090 229745252 -52448412 - MER104 DNA MER2_type 0 180 5 899 242 71 9 chr1 229745503 229745714 -52447950 + MER58A DNA MER1_type 1 224 0 2104 104 3 29 chr1 229745822 229746129 -52447535 + AluSq SINE Alu 1 299 -14 1121 271 83 48 chr1 229746455 229746893 -52446771 - L2 LINE L2 -5 3308 2887 2078 109 4 0 chr1 229746893 229747168 -52446496 + AluSx SINE Alu 1 276 -36 1121 271 83 48 chr1 229747168 229747179 -52446485 - L2 LINE L2 -426 2887 2878 234 0 0 0 chr1 229747179 229747205 -52446459 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 1121 271 83 48 chr1 229747205 229747600 -52446064 - L2 LINE L2 -435 2878 2431 1966 149 0 13 chr1 229748026 229748327 -52445337 + AluSx SINE Alu 1 297 -15 2332 98 0 0 chr1 229748340 229748636 -52445028 - AluSx SINE Alu -16 296 1 638 201 170 13 chr1 229748672 229748831 -52444833 - MER5A DNA MER1_type -2 187 4 253 254 16 16 chr1 229748927 229748990 -52444674 - L2 LINE L2 -3 3269 3207 445 157 186 0 chr1 229750621 229750722 -52442942 + FLAM_A SINE Alu 36 149 0 4753 135 90 16 chr1 229751145 229751914 -52441750 + LTR1B LTR ERV1 1 826 0 244 360 43 30 chr1 229752057 229752221 -52441443 + L2 LINE L2 198 363 -2951 2025 144 42 6 chr1 229752262 229752596 -52441068 + MLT2C1 LTR ERVL 1 346 -51 384 125 0 0 chr1 229752599 229752663 -52441001 + (TG)n Simple_repeat Simple_repeat 2 65 0 467 141 0 0 chr1 229752897 229752968 -52440696 + MADE1 DNA Mariner 1 71 -9 533 360 129 18 chr1 229753002 229753560 -52440104 + L2 LINE L2 2287 2906 -408 799 252 49 9 chr1 229753639 229753865 -52439799 - LTR16B LTR ERVL -2 462 228 2109 107 0 0 chr1 229754158 229754429 -52439235 - AluSx SINE Alu -41 271 1 3311 179 33 93 chr1 229754470 229755368 -52438296 + L1MA9 LINE L1 5449 6292 -20 574 290 48 48 chr1 229755987 229756277 -52437387 - L2 LINE L2 -458 2856 2567 398 224 82 41 chr1 229757975 229758122 -52435542 + L1ME4a LINE L1 5966 6118 -3 22 106 0 0 chr1 229758148 229758233 -52435431 + AT_rich Low_complexity Low_complexity 1 85 0 2276 91 0 20 chr1 229758287 229758583 -52435081 - AluSq SINE Alu -23 290 1 1588 139 13 63 chr1 229758733 229759036 -52434628 + MLT1B LTR MaLR 1 288 -102 1864 147 13 19 chr1 229759886 229760200 -52433464 + AluJo SINE Alu 1 312 0 358 348 37 12 chr1 229760976 229761140 -52432524 + MIR3 SINE MIR 40 207 -1 603 264 50 31 chr1 229761246 229761504 -52432160 + L1MC4a LINE L1 5336 5598 -2210 5129 131 56 37 chr1 229761509 229761785 -52431879 - Tigger3(Golem) DNA MER2_type 0 3029 2760 2313 95 0 13 chr1 229761785 229762090 -52431574 + AluSx SINE Alu 1 301 -11 5129 131 56 37 chr1 229762090 229762478 -52431186 - Tigger3(Golem) DNA MER2_type -269 2760 2339 1639 181 7 19 chr1 229762478 229762788 -52430876 - AluJo SINE Alu -6 306 1 5129 131 56 37 chr1 229762788 229763071 -52430593 - Tigger3(Golem) DNA MER2_type -690 2339 2063 669 213 0 8 chr1 229763084 229763206 -52430458 - Tigger3(Golem) DNA MER2_type -2905 124 4 293 257 16 0 chr1 229763211 229763293 -52430371 + L1MC4a LINE L1 5606 5691 -430 306 286 27 77 chr1 229763419 229763512 -52430152 + L1MC4a LINE L1 5703 5799 -2009 2125 130 0 13 chr1 229763512 229763674 -52429990 - AluSx SINE Alu -17 295 137 2255 76 0 0 chr1 229763674 229763965 -52429699 - AluY SINE Alu -20 291 1 2125 130 0 13 chr1 229763965 229764101 -52429563 - AluSx SINE Alu -175 137 1 306 286 27 77 chr1 229764101 229764266 -52429398 + L1MC4a LINE L1 5799 5948 -1860 240 111 0 0 chr1 229765553 229765589 -52428075 + (A)n Simple_repeat Simple_repeat 1 36 0 1345 109 5 0 chr1 229765589 229765773 -52427891 + AluSx SINE Alu 1 185 -127 405 0 0 0 chr1 229765773 229765818 -52427846 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 996 208 121 87 chr1 229766086 229766466 -52427198 + MSTD LTR MaLR 3 395 -1 1249 282 59 32 chr1 229766476 229767036 -52426628 + MLT1K LTR MaLR 2 576 -12 220 237 17 17 chr1 229767188 229767247 -52426417 + L2 LINE L2 3207 3265 -7 2097 144 0 0 chr1 229767991 229768289 -52425375 - AluSx SINE Alu -14 298 1 1920 192 14 14 chr1 229769005 229769370 -52424294 - MLT1A1 LTR MaLR 0 365 1 216 274 0 16 chr1 229769853 229769915 -52423749 + (TATG)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr1 229770377 229770398 -52423266 + AT_rich Low_complexity Low_complexity 1 21 0 2135 209 81 40 chr1 229770980 229771363 -52422301 + MLT1F LTR MaLR 1 412 -130 2338 107 0 0 chr1 229771363 229771661 -52422003 - AluSx SINE Alu -14 298 1 2135 209 81 40 chr1 229771661 229771798 -52421866 + MLT1F LTR MaLR 412 542 0 437 291 125 53 chr1 229772114 229772240 -52421424 + L2 LINE L2 2570 2685 -587 953 150 0 0 chr1 229772240 229772373 -52421291 - FLAM_C SINE Alu 0 133 1 437 291 125 53 chr1 229772373 229772674 -52420990 + L2 LINE L2 2685 3032 -240 226 295 39 0 chr1 229772866 229772944 -52420720 + MER91A DNA MER1_type 28 108 -88 269 315 130 11 chr1 229773011 229773103 -52420561 + L2 LINE L2 3154 3256 -16 371 244 22 0 chr1 229773596 229773686 -52419978 - MER69 DNA AcHobo 0 2526 2435 319 202 358 0 chr1 229773707 229773816 -52419848 - MER69 DNA AcHobo -979 247 100 604 286 139 23 chr1 229774150 229774705 -52418959 - L2 LINE L2 -17 3296 2623 427 302 138 6 chr1 229775052 229775211 -52418453 + MIR SINE MIR 31 210 -52 1592 108 0 5 chr1 229776592 229776805 -52416859 + AluJb SINE Alu 85 296 -16 228 236 73 0 chr1 229777446 229777501 -52416163 - MIR3 SINE MIR -22 186 128 227 317 120 7 chr1 229777587 229777729 -52415935 + L2 LINE L2 2941 3098 -174 1963 127 29 0 chr1 229779512 229779823 -52413841 + AluSx SINE Alu 1 319 0 557 341 44 60 chr1 229779880 229780293 -52413371 + L2 LINE L2 2866 3271 -1 2309 109 0 0 chr1 229780441 229780752 -52412912 + AluSx SINE Alu 1 311 -1 674 281 112 32 chr1 229780774 229781087 -52412577 + L2 LINE L2 2948 3285 -28 222 62 0 0 chr1 229781087 229781119 -52412545 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 1638 150 11 15 chr1 229781152 229781419 -52412245 + AluJo SINE Alu 30 295 -17 834 172 0 0 chr1 229781426 229781560 -52412104 + AluJo SINE Alu 1 134 -178 513 234 78 42 chr1 229782375 229782542 -52411122 + MIR SINE MIR 42 214 -48 197 341 121 16 chr1 229784754 229785118 -52408546 + L2 LINE L2 2257 2658 -656 446 282 141 26 chr1 229785697 229785931 -52407733 + MIR SINE MIR 2 262 0 1826 164 37 3 chr1 229786092 229786391 -52407273 - AluJo SINE Alu -3 309 1 699 263 91 77 chr1 229787165 229787583 -52406081 + L2 LINE L2 2200 2623 -691 423 252 114 0 chr1 229787630 229787761 -52405903 - MIR SINE MIR -1 261 116 495 254 156 5 chr1 229788105 229788191 -52405473 - MER46A DNA MER2_type -2495 236 164 189 0 0 0 chr1 229788191 229788212 -52405452 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2034 126 0 0 chr1 229788218 229788496 -52405168 - AluSx SINE Alu -34 278 1 495 254 156 5 chr1 229788496 229788607 -52405057 - MER46A DNA MER2_type -2571 160 1 548 203 119 0 chr1 229790619 229790737 -52402927 + FLAM_A SINE Alu 1 132 -1 23 33 0 0 chr1 229792609 229792639 -52401025 + AT_rich Low_complexity Low_complexity 1 30 0 2475 111 34 3 chr1 229794428 229794778 -52398886 - MER46B DNA MER2_type 0 236 1 287 253 44 11 chr1 229795060 229795151 -52398513 + MIR SINE MIR 128 221 -41 250 182 127 0 chr1 229795601 229795656 -52398008 + L2 LINE L2 3251 3312 -1 1583 256 162 14 chr1 229796155 229796662 -52397002 + MLT1G1 LTR MaLR 1 582 -13 245 173 135 19 chr1 229797299 229797351 -52396313 + MIR3 SINE MIR 144 201 -7 1198 210 0 109 chr1 229797787 229798125 -52395539 - MER21B LTR ERV1 -550 313 13 210 106 43 43 chr1 229799085 229799132 -52394532 + C-rich Low_complexity Low_complexity 2 48 0 366 108 36 0 chr1 229799245 229799328 -52394336 + (TA)n Simple_repeat Simple_repeat 2 87 0 766 244 0 6 chr1 229799328 229799500 -52394164 - MSTB2 LTR MaLR -49 408 238 * 1472 202 72 29 chr1 229799495 229799841 -52393823 + MER21B LTR ERV1 501 861 -2 210 293 0 0 chr1 229800747 229800805 -52392859 + C-rich Low_complexity Low_complexity 4 61 0 306 125 0 0 chr1 229801553 229801601 -52392063 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 406 208 208 0 chr1 229801607 229801703 -52391961 + FLAM_C SINE Alu 1 116 -27 213 178 0 0 chr1 229801705 229801750 -52391914 + G-rich Low_complexity Low_complexity 2 46 0 192 125 0 0 chr1 229801747 229801779 -52391885 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 * 29 0 0 0 chr1 229801790 229801819 -52391845 + AT_rich Low_complexity Low_complexity 1 29 0 698 215 56 36 chr1 229801897 229802036 -52391628 + MIR SINE MIR 33 179 -83 2536 74 0 0 chr1 229802036 229802345 -52391319 + AluY SINE Alu 1 309 -2 698 215 56 36 chr1 229802345 229802400 -52391264 + MIR SINE MIR 179 231 -31 669 195 144 6 chr1 229802405 229802579 -52391085 + MIR SINE MIR 65 262 0 766 199 104 12 chr1 229802635 229802876 -52390788 - MER20B DNA MER1_type -6 777 515 223 119 0 68 chr1 229804777 229804836 -52388828 + (TGG)n Simple_repeat Simple_repeat 2 56 0 378 260 31 8 chr1 229805080 229805207 -52388457 - L1ME4a LINE L1 -2 6119 5990 564 261 113 61 chr1 229805509 229805835 -52387829 + MLT1K LTR MaLR 244 586 -2 310 291 67 75 chr1 229805836 229806090 -52387574 - L1ME4a LINE L1 -474 5647 5396 300 184 0 0 chr1 229806189 229806238 -52387426 - L1MB3 LINE L1 -52 6131 6083 612 81 139 0 chr1 229806245 229806331 -52387333 - AluJ SINE Alu -7 305 208 314 95 0 0 chr1 229806346 229806388 -52387276 - AluJ SINE Alu -193 109 68 689 129 0 0 chr1 229806388 229806481 -52387183 - AluJ/FLAM SINE Alu -218 94 2 2164 116 7 7 chr1 229806718 229807028 -52386636 + AluSx SINE Alu 1 310 -2 204 193 18 18 chr1 229807048 229807105 -52386559 + T-rich Low_complexity Low_complexity 3 59 0 694 235 30 6 chr1 229807219 229807385 -52386279 + MER20B DNA MER1_type 34 203 -580 1474 146 21 107 chr1 229807658 229807986 -52385678 + AluYb8 SINE Alu 1 300 -18 1004 147 27 0 chr1 229808106 229808256 -52385408 - AluJb SINE Alu -10 302 149 1836 116 58 4 chr1 229808497 229808773 -52384891 - AluSp SINE Alu -22 291 1 281 314 76 19 chr1 229809415 229809520 -52384144 + MER91A DNA MER1_type 56 166 -30 224 375 12 0 chr1 229809548 229809628 -52384036 + MER91A DNA MER1_type 116 196 0 4124 130 44 0 chr1 229810994 229811609 -52382055 + L1PA16 LINE L1 5516 6157 -9 243 0 0 0 chr1 229811805 229811832 -52381832 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2134 109 0 0 chr1 229811836 229812120 -52381544 - AluSx SINE Alu -28 284 1 1640 197 38 12 chr1 229812185 229812530 -52381134 - MLT1A1 LTR MaLR -11 354 1 705 173 8 23 chr1 229812766 229812899 -52380765 + FLAM_A SINE Alu 2 132 -1 652 181 103 0 chr1 229813261 229813377 -52380287 + FLAM_A SINE Alu 1 128 -5 2348 96 0 3 chr1 229813440 229813752 -52379912 - AluY SINE Alu 0 311 1 231 61 0 0 chr1 229813759 229813792 -52379872 + (T)n Simple_repeat Simple_repeat 1 33 0 276 271 24 0 chr1 229813932 229814017 -52379647 - HsTC2 DNA Tc2 0 1898 1812 226 296 25 12 chr1 229814006 229814087 -52379577 - HsTC2 DNA Tc2 -1816 82 1 * 552 312 51 66 chr1 229814109 229814519 -52379145 + L2 LINE L2 2560 2963 -351 279 0 0 0 chr1 229814799 229814830 -52378834 + (TG)n Simple_repeat Simple_repeat 2 32 0 1027 187 6 0 chr1 229814858 229815029 -52378635 - FRAM SINE Alu -9 167 1 1982 126 0 4 chr1 229815251 229815528 -52378136 + AluSx SINE Alu 1 276 -36 234 0 0 0 chr1 229815539 229815565 -52378099 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 980 301 110 10 chr1 229815568 229815960 -52377704 - L2 LINE L2 -453 2861 2431 1966 149 0 13 chr1 229816386 229816687 -52376977 + AluSx SINE Alu 1 297 -15 2332 98 0 0 chr1 229816700 229816996 -52376668 - AluSx SINE Alu -16 296 1 638 201 170 13 chr1 229817032 229817191 -52376473 - MER5A DNA MER1_type -2 187 4 253 254 16 16 chr1 229817287 229817350 -52376314 - L2 LINE L2 -3 3269 3207 2074 92 62 20 chr1 229819447 229819739 -52373925 + AluY SINE Alu 1 304 -7 201 94 0 0 chr1 229819880 229819912 -52373752 + (TC)n Simple_repeat Simple_repeat 1 32 0 186 71 0 0 chr1 229820294 229820322 -52373342 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 354 204 64 64 chr1 229820324 229820389 -52373275 - Charlie7 DNA MER1_type -41 2571 2507 1070 215 80 43 chr1 229820389 229820715 -52372949 - MER46C DNA MER2_type 0 338 1 354 204 64 64 chr1 229820715 229820806 -52372858 - Charlie7 DNA MER1_type -104 2508 2415 270 188 109 109 chr1 229822001 229822129 -52371535 + AluSc SINE Alu 7 134 -165 23 0 0 0 chr1 229822271 229822294 -52371370 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr1 229822331 229822359 -52371305 + AT_rich Low_complexity Low_complexity 1 28 0 2275 100 0 19 chr1 229823323 229823632 -52370032 - AluSg SINE Alu -7 303 1 846 177 140 6 chr1 229824687 229824851 -52368813 + AluJo SINE Alu 1 186 -126 1086 96 0 0 chr1 229824855 229824990 -52368674 + AluSq/x SINE Alu 1 135 -177 2080 109 3 14 chr1 229824990 229825283 -52368381 + AluSx SINE Alu 2 291 -21 630 335 71 54 chr1 229825343 229826134 -52367530 + L2 LINE L2 2398 3255 -17 195 42 0 0 chr1 229826134 229826158 -52367506 + (TTGG)n Simple_repeat Simple_repeat 1 24 0 630 335 71 54 chr1 229826158 229826177 -52367487 + L2 LINE L2 3255 3272 0 848 232 64 17 chr1 229826206 229826439 -52367225 + MIR SINE MIR 19 262 0 2089 129 16 0 chr1 229826501 229826804 -52366860 + AluSx SINE Alu 1 308 -4 204 125 0 0 chr1 229827502 229827534 -52366130 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 344 304 123 15 chr1 229827841 229828045 -52365619 - MIR SINE MIR -7 255 30 476 169 11 0 chr1 229828659 229828748 -52364916 + AluSg/x SINE Alu 207 296 -16 1010 162 198 36 chr1 229829489 229829729 -52363935 - Charlie5 DNA MER1_type -4 2620 2310 2359 104 0 3 chr1 229829729 229830038 -52363626 - AluSx SINE Alu -4 308 1 1010 162 198 36 chr1 229830038 229830130 -52363534 - Charlie5 DNA MER1_type -314 2310 2234 317 291 0 0 chr1 229830140 229830219 -52363445 - Charlie5 DNA MER1_type -2507 105 27 978 263 126 16 chr1 229830458 229830989 -52362675 - MLT2E LTR ERVL -4 624 2 218 290 29 14 chr1 229831291 229831360 -52362304 + (TGGA)n Simple_repeat Simple_repeat 3 72 0 455 263 206 62 chr1 229831360 229831517 -52362147 + L2 LINE L2 2831 2964 -349 2260 82 7 3 chr1 229831517 229831809 -52361855 - AluY SINE Alu -18 293 1 455 263 206 62 chr1 229831809 229832073 -52361591 + L2 LINE L2 2964 3313 0 1966 120 4 4 chr1 229832514 229832790 -52360874 + AluSx SINE Alu 1 276 -36 216 0 0 0 chr1 229832794 229832818 -52360846 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2205 119 3 0 chr1 229832898 229833201 -52360463 - AluSx SINE Alu -8 304 1 1715 140 25 4 chr1 229833434 229833713 -52359951 + L1MB3 LINE L1 5889 6173 -10 1978 188 33 63 chr1 229833802 229834323 -52359341 + MLT1D LTR MaLR 1 505 0 2159 114 0 3 chr1 229834923 229835213 -52358451 + AluSx SINE Alu 1 289 -23 1624 159 21 57 chr1 229835556 229835839 -52357825 + AluJo SINE Alu 1 273 -39 306 73 0 0 chr1 229835839 229835880 -52357784 + (ATG)n Simple_repeat Simple_repeat 2 42 0 622 358 49 32 chr1 229835921 229836329 -52357335 + L2 LINE L2 2553 2967 -347 232 266 16 16 chr1 229836383 229836447 -52357217 + MIR SINE MIR 174 237 -25 2137 80 0 4 chr1 229836448 229836724 -52356940 - AluY SINE Alu -1 310 36 22 0 0 0 chr1 229836728 229836750 -52356914 + AT_rich Low_complexity Low_complexity 1 22 0 249 333 133 8 chr1 229836929 229837049 -52356615 + L2 LINE L2 3134 3268 -4 344 264 74 62 chr1 229837320 229837582 -52356082 - MLT1H LTR MaLR -246 303 5 242 304 94 29 chr1 229838066 229838204 -52355460 + L2 LINE L2 3167 3313 0 2453 97 0 0 chr1 229838329 229838639 -52355025 - AluSg SINE Alu 0 310 1 259 306 42 0 chr1 229838825 229838897 -52354767 + L2 LINE L2 2979 3053 -219 786 225 9 68 chr1 229839271 229839493 -52354171 - MIR SINE MIR -44 218 10 1158 222 47 30 chr1 229839689 229840142 -52353522 + MLT1B LTR MaLR 1 390 0 1306 101 0 0 chr1 229840823 229840991 -52352673 + AluSp SINE Alu 134 301 -12 23 0 0 0 chr1 229841220 229841243 -52352421 + AT_rich Low_complexity Low_complexity 1 23 0 259 210 20 50 chr1 229842042 229842142 -52351522 - L1MEc LINE L1 -4086 2493 2358 22 0 0 0 chr1 229842379 229842401 -52351263 + AT_rich Low_complexity Low_complexity 1 22 0 731 230 32 48 chr1 229843182 229843434 -52350230 + L1MEc LINE L1 1999 2246 -4150 26 30 0 0 chr1 229843515 229843548 -52350116 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 229843879 229843902 -52349762 + AT_rich Low_complexity Low_complexity 1 23 0 972 231 123 109 chr1 229844595 229845056 -52348608 + L2 LINE L2 2554 3040 -273 2291 101 0 7 chr1 229845056 229845364 -52348300 + AluY SINE Alu 1 306 -5 972 231 123 109 chr1 229845364 229845632 -52348032 + L2 LINE L2 3040 3303 -10 1720 163 13 3 chr1 229845633 229845934 -52347730 - AluJo SINE Alu -8 304 1 1469 207 108 89 chr1 229846074 229846591 -52347073 + MLT1F LTR MaLR 13 539 -3 194 382 32 25 chr1 229846608 229846765 -52346899 - L2 LINE L2 -666 2648 2491 229 306 177 43 chr1 229847010 229847242 -52346422 + L2 LINE L2 3009 3271 -1 2142 64 0 8 chr1 229847684 229847949 -52345715 - AluY SINE Alu -7 304 42 1868 148 3 36 chr1 229848211 229848515 -52345149 + AluSx SINE Alu 1 294 -18 226 269 15 0 chr1 229848553 229848620 -52345044 + (TA)n Simple_repeat Simple_repeat 1 68 0 1945 161 0 3 chr1 229848659 229848957 -52344707 + AluJb SINE Alu 1 297 -15 1472 202 72 29 chr1 229850084 229850430 -52343234 - MER21B LTR ERV1 -2 861 501 766 244 0 6 chr1 229850425 229850597 -52343067 + MSTB2 LTR MaLR 238 408 -49 * 362 102 34 11 chr1 229850597 229850685 -52342979 + (TA)n Simple_repeat Simple_repeat 2 91 0 2588 179 13 78 chr1 229850700 229851237 -52342427 - MER21B LTR ERV1 -347 516 15 602 37 12 0 chr1 229853444 229853525 -52340139 + (GA)n Simple_repeat Simple_repeat 1 82 0 614 309 34 30 chr1 229853559 229853821 -52339843 - L1MC4a LINE L1 -1914 5894 5632 560 207 9 9 chr1 229854095 229854238 -52339426 + FLAM_A SINE Alu 1 143 0 185 333 153 0 chr1 229854376 229854526 -52339138 - MIR SINE MIR -43 219 47 2149 98 76 9 chr1 229855463 229855791 -52337873 - THE1C LTR MaLR 0 375 26 2120 130 0 7 chr1 229855791 229856084 -52337580 + AluSx SINE Alu 1 291 -21 236 36 0 0 chr1 229856094 229856122 -52337542 - THE1C LTR MaLR -336 39 12 185 260 0 91 chr1 229856203 229856280 -52337384 - L2 LINE L2 -202 3070 3001 608 239 49 58 chr1 229856294 229856543 -52337121 - MIR SINE MIR -2 260 7 206 250 0 83 chr1 229856655 229856763 -52336901 + G-rich Low_complexity Low_complexity 2 100 0 2826 133 32 11 chr1 229856826 229857298 -52336366 - L1MB5 LINE L1 -7 6167 5686 232 289 113 49 chr1 229857784 229857894 -52335770 + L2 LINE L2 2927 3049 -223 2727 90 0 3 chr1 229857894 229858250 -52335414 - THE1A LTR MaLR 0 355 1 232 289 113 49 chr1 229858250 229858281 -52335383 + L2 LINE L2 3049 3077 -195 227 289 105 73 chr1 229858447 229858886 -52334778 - L2 LINE L2 -1228 2086 1634 414 291 80 23 chr1 229859032 229859207 -52334457 + MLT1H LTR MaLR 94 278 -271 222 62 0 0 chr1 229859269 229859301 -52334363 + (CAGCC)n Simple_repeat Simple_repeat 2 33 0 1977 129 3 3 chr1 229859766 229860052 -52333612 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr1 229860057 229860082 -52333582 + AT_rich Low_complexity Low_complexity 1 25 0 1571 191 19 35 chr1 229860527 229860644 -52333020 + AluJo SINE Alu 3 120 -192 2530 70 0 0 chr1 229860644 229860942 -52332722 - AluSc SINE Alu -9 300 3 1571 191 19 35 chr1 229860942 229861123 -52332541 + AluJo SINE Alu 120 298 -14 2131 152 0 0 chr1 229861123 229861433 -52332231 + AluSx SINE Alu 1 310 -2 1571 191 19 35 chr1 229861433 229861447 -52332217 + AluJo SINE Alu 298 311 -1 1317 43 0 22 chr1 229861453 229861637 -52332027 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 534 143 0 0 chr1 229861639 229861730 -52331934 + (GGAA)n Simple_repeat Simple_repeat 3 93 0 21 0 0 0 chr1 229861753 229861774 -52331890 + AT_rich Low_complexity Low_complexity 1 21 0 2222 111 0 0 chr1 229861778 229862058 -52331606 + AluSx SINE Alu 1 280 -32 1103 25 13 19 chr1 229862059 229862216 -52331448 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 368 160 27 0 chr1 229862225 229862300 -52331364 + GA-rich Low_complexity Low_complexity 3 79 0 388 207 138 0 chr1 229862307 229862394 -52331270 + AluJ/FLAM SINE Alu 2 100 -202 279 133 0 0 chr1 229862404 229862449 -52331215 + (GGGGA)n Simple_repeat Simple_repeat 2 46 0 192 125 0 0 chr1 229862446 229862478 -52331186 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 * 29 0 0 0 chr1 229862489 229862518 -52331146 + AT_rich Low_complexity Low_complexity 1 29 0 544 207 74 7 chr1 229862600 229862735 -52330929 + MIR SINE MIR 36 179 -83 2362 103 0 0 chr1 229862735 229863045 -52330619 + AluY SINE Alu 1 310 -1 2891 148 12 65 chr1 229863161 229863723 -52329941 + L1MC1 LINE L1 5772 6304 -29 2559 81 0 3 chr1 229863723 229864032 -52329632 + AluSx SINE Alu 1 308 -4 2891 148 12 65 chr1 229864032 229864051 -52329613 + L1MC1 LINE L1 6304 6322 -11 2376 113 0 0 chr1 229864052 229864363 -52329301 + AluSx SINE Alu 1 311 -1 670 219 0 0 chr1 229864500 229864623 -52329041 + FLAM_A SINE Alu 1 123 -10 402 319 91 13 chr1 229865934 229866166 -52327498 - MIR SINE MIR -1 261 12 805 165 0 0 chr1 229866278 229866399 -52327265 + FLAM_C SINE Alu 1 121 -22 239 271 94 31 chr1 229866494 229866590 -52327074 - MIR SINE MIR -82 126 23 248 287 93 23 chr1 229866703 229866832 -52326832 + MIR SINE MIR 125 262 0 23 0 0 0 chr1 229867075 229867098 -52326566 + AT_rich Low_complexity Low_complexity 1 23 0 461 190 0 0 chr1 229868667 229868746 -52324918 + AluJb SINE Alu 2 80 -232 850 119 62 189 chr1 229868893 229869137 -52324527 + AluJb SINE Alu 89 301 -11 327 234 0 0 chr1 229869401 229869465 -52324199 - MER103 DNA DNA -101 65 2 23 33 0 0 chr1 229869674 229869704 -52323960 + AT_rich Low_complexity Low_complexity 1 30 0 2317 103 0 0 chr1 229870325 229870625 -52323039 - AluSx SINE Alu -11 301 2 200 188 0 0 chr1 229870837 229870869 -52322795 + (ATTG)n Simple_repeat Simple_repeat 3 34 0 1677 131 35 4 chr1 229871250 229871510 -52322154 - AluY SINE Alu -16 295 28 2333 122 0 0 chr1 229871698 229872009 -52321655 - AluSx SINE Alu -1 311 1 245 274 5 75 chr1 229872989 229873175 -52320489 + A-rich Low_complexity Low_complexity 4 176 0 32 100 0 0 chr1 229873278 229873318 -52320346 + AT_rich Low_complexity Low_complexity 1 40 0 26 57 0 0 chr1 229873401 229873436 -52320228 + AT_rich Low_complexity Low_complexity 1 35 0 642 130 0 0 chr1 229873516 229873608 -52320056 + AluJ/FLAM SINE Alu 3 94 -218 580 86 94 7 chr1 229873608 229873751 -52319913 + AluJ SINE Alu 68 305 -7 297 184 0 0 chr1 229873758 229873807 -52319857 + L1MB3 LINE L1 6083 6131 -52 294 291 67 75 chr1 229873906 229874160 -52319504 + L1ME4a LINE L1 5396 5647 -474 575 261 113 61 chr1 229874161 229874487 -52319177 - MLT1K LTR MaLR -2 586 244 346 268 31 8 chr1 229874789 229874916 -52318748 + L1ME4a LINE L1 5990 6119 -2 396 126 11 81 chr1 229875786 229875871 -52317793 - MLT1I LTR MaLR -18 391 313 773 186 36 4 chr1 229875871 229876086 -52317578 + Tigger7 DNA MER2_type 1 311 -2176 31 0 0 0 chr1 229876276 229876307 -52317357 + AT_rich Low_complexity Low_complexity 1 31 0 191 301 0 12 chr1 229876684 229876767 -52316897 - L2 LINE L2 -469 2845 2764 30 27 0 0 chr1 229879181 229879218 -52314446 + AT_rich Low_complexity Low_complexity 1 37 0 563 257 75 43 chr1 229882402 229882655 -52311009 - MIR SINE MIR 0 262 2 461 206 196 0 chr1 229882842 229882944 -52310720 + Charlie2 DNA MER1_type 27 148 -2714 1267 198 142 78 chr1 229882999 229883342 -52310322 + Charlie2 DNA MER1_type 2230 2550 -312 1973 135 11 0 chr1 229883342 229883676 -52309988 - AluSp SINE Alu 0 337 1 1267 198 142 78 chr1 229883676 229883757 -52309907 + Charlie2 DNA MER1_type 2550 2624 -238 666 197 191 6 chr1 229883757 229883871 -52309793 - MER20 DNA MER1_type -4 215 123 252 0 0 0 chr1 229883871 229883899 -52309765 + (CA)n Simple_repeat Simple_repeat 1 28 0 666 197 191 6 chr1 229883899 229883962 -52309702 - MER20 DNA MER1_type -96 123 5 1267 198 142 78 chr1 229883962 229884065 -52309599 + Charlie2 DNA MER1_type 2624 2719 -143 1794 168 7 0 chr1 229884065 229884350 -52309314 - AluJb SINE Alu -22 290 4 1267 198 142 78 chr1 229884350 229884411 -52309253 + Charlie2 DNA MER1_type 2719 2859 -3 1693 159 31 28 chr1 229885135 229885444 -52308220 - AluJo SINE Alu 0 312 1 2165 111 4 0 chr1 229885722 229886056 -52307608 + AluSp SINE Alu 3 337 0 234 0 0 0 chr1 229886056 229886082 -52307582 + (GGAA)n Simple_repeat Simple_repeat 2 27 0 241 253 81 0 chr1 229886588 229886675 -52306989 - L2 LINE L2 0 3313 3220 625 204 0 0 chr1 229886845 229886958 -52306706 - AluJb SINE Alu -18 294 182 302 80 0 0 chr1 229887058 229887108 -52306556 + Alu SINE Alu 251 300 0 610 271 8 0 chr1 229887746 229887879 -52305785 + MER94 DNA DNA 1 134 0 439 265 151 50 chr1 229888409 229888551 -52305113 - MLT1K LTR MaLR -347 241 68 1726 247 94 24 chr1 229888551 229889105 -52304559 + MLT1E LTR MaLR 1 593 0 439 265 151 50 chr1 229889105 229889181 -52304483 - MLT1K LTR MaLR -520 68 1 2291 93 7 0 chr1 229889182 229889473 -52304191 + AluSg SINE Alu 1 293 -17 2385 86 3 3 chr1 229889654 229889957 -52303707 + AluSp SINE Alu 1 303 -10 2177 109 10 0 chr1 229890095 229890389 -52303275 + AluY SINE Alu 1 297 -14 1871 230 129 15 chr1 229890424 229891007 -52302657 - L1ME3 LINE L1 -55 6107 5459 513 84 0 0 chr1 229891336 229891407 -52302257 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2238 127 0 9 chr1 229891407 229891722 -52301942 - AluSx SINE Alu 0 312 1 278 294 149 47 chr1 229892160 229892797 -52300867 + L2 LINE L2 1562 2263 -1051 2270 112 26 0 chr1 229893318 229893622 -52300042 + AluSx SINE Alu 1 312 0 208 369 64 11 chr1 229894547 229894734 -52298930 - L2 LINE L2 -496 2818 2622 400 296 99 43 chr1 229895489 229895722 -52297942 - MLT1K LTR MaLR -20 568 323 2260 112 0 10 chr1 229896476 229896789 -52296875 + AluSq SINE Alu 1 310 -3 3634 192 54 50 chr1 229897201 229897801 -52295863 + MER21B LTR ERV1 1 608 -255 1653 152 55 7 chr1 229897801 229898090 -52295574 + AluJo SINE Alu 1 303 -9 3634 192 54 50 chr1 229898090 229898337 -52295327 + MER21B LTR ERV1 608 852 -11 1753 176 16 19 chr1 229898945 229899257 -52294407 + AluJo SINE Alu 1 311 -1 2876 177 46 19 chr1 229899257 229899840 -52293824 + L1MB5 LINE L1 5576 6174 0 2239 120 7 0 chr1 229899852 229900160 -52293504 + AluSg SINE Alu 1 310 0 2127 120 0 7 chr1 229900281 229900573 -52293091 - AluSx SINE Alu -22 290 1 258 231 26 13 chr1 229901635 229901713 -52291951 - MER103 DNA DNA -79 87 9 558 258 13 19 chr1 229902178 229902333 -52291331 + MIR SINE MIR 18 171 -91 212 162 0 0 chr1 229902883 229902920 -52290744 + L2 LINE L2 3277 3313 0 1502 240 49 0 chr1 229903017 229903342 -52290322 - MER58B DNA MER1_type 0 341 1 2428 89 3 0 chr1 229903359 229903663 -52290001 + AluSp SINE Alu 1 305 -8 440 271 131 27 chr1 229903690 229903911 -52289753 - L2 LINE L2 -11 3302 3059 2234 103 0 34 chr1 229904227 229904548 -52289116 + AluSx SINE Alu 1 310 -2 2276 106 0 0 chr1 229904552 229904844 -52288820 + AluSx SINE Alu 6 297 -15 1053 185 0 0 chr1 229904844 229905017 -52288647 + AluJo/FRAM SINE Alu 134 306 -6 40 37 0 0 chr1 229905348 229905402 -52288262 + AT_rich Low_complexity Low_complexity 1 54 0 599 255 97 18 chr1 229905626 229906052 -52287612 - LTR33 LTR ERVL -3 518 5 576 165 0 0 chr1 229906147 229906262 -52287402 + (TG)n Simple_repeat Simple_repeat 2 116 0 240 35 0 0 chr1 229906347 229906376 -52287288 + (GA)n Simple_repeat Simple_repeat 2 30 0 1806 137 33 4 chr1 229906377 229906648 -52287016 - AluSx SINE Alu -33 279 1 817 216 126 76 chr1 229906683 229906731 -52286933 - MLT1D LTR MaLR 0 467 423 1726 149 24 10 chr1 229906731 229907019 -52286645 + AluJb SINE Alu 18 309 -3 817 216 126 76 chr1 229907019 229907393 -52286271 - MLT1D LTR MaLR -44 423 17 1695 265 157 11 chr1 229907402 229908206 -52285458 + L1MC4 LINE L1 7119 8039 -3 506 285 28 34 chr1 229908477 229908656 -52285008 - MER5B DNA MER1_type 0 178 1 2313 92 0 3 chr1 229908726 229909020 -52284644 + AluSx SINE Alu 5 297 -15 2138 127 0 0 chr1 229909186 229909478 -52284186 + AluSx SINE Alu 1 292 -20 860 159 29 0 chr1 229909609 229909747 -52283917 + AluJb SINE Alu 154 295 -17 204 286 202 12 chr1 229909812 229909896 -52283768 + L2 LINE L2 3137 3236 -36 974 251 122 37 chr1 229910556 229911047 -52282617 + MLT1H LTR MaLR 14 546 -3 1950 123 0 66 chr1 229911049 229911367 -52282297 + AluSx SINE Alu 1 297 -15 1535 146 0 0 chr1 229911371 229911591 -52282073 + AluSg/x SINE Alu 86 305 -7 1790 82 0 0 chr1 229911594 229911814 -52281850 + AluSg/x SINE Alu 83 302 -8 865 115 0 0 chr1 229911821 229911934 -52281730 + AluSq/x SINE Alu 20 132 -181 270 0 0 0 chr1 229912836 229912866 -52280798 + (TG)n Simple_repeat Simple_repeat 2 31 0 211 276 0 35 chr1 229913003 229913061 -52280603 + L2 LINE L2 3190 3245 -27 182 245 66 57 chr1 229913269 229913375 -52280289 + MIR SINE MIR 31 137 -71 700 182 19 32 chr1 229913776 229913930 -52279734 + L1ME1 LINE L1 5787 5938 -228 2329 96 0 0 chr1 229913931 229914224 -52279440 + AluSx SINE Alu 1 293 -19 533 213 226 2 chr1 229914617 229914957 -52278707 - Charlie4a DNA MER1_type -1 507 20 1864 140 24 7 chr1 229915665 229915958 -52277706 - AluJb SINE Alu -14 298 1 2694 45 0 0 chr1 229916210 229916519 -52277145 - AluY SINE Alu -2 309 1 235 267 116 70 chr1 229916926 229917098 -52276566 + L2 LINE L2 1688 1867 -1447 185 0 40 0 chr1 229917326 229917351 -52276313 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 712 191 9 0 chr1 229917373 229917488 -52276176 - AluJb SINE Alu -111 201 86 447 86 0 0 chr1 229917605 229917663 -52276001 + Alu SINE Alu 2 59 -254 949 152 0 0 chr1 229917677 229917828 -52275836 + AluJb SINE Alu 156 306 -6 2007 113 7 3 chr1 229917862 229918153 -52275511 - AluSc SINE Alu -4 305 14 219 88 0 0 chr1 229918189 229918223 -52275441 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 720 171 18 0 chr1 229918223 229918334 -52275330 - FRAM SINE Alu -32 144 32 1552 191 88 116 chr1 229918378 229918492 -52275172 - Charlie2 DNA MER1_type -252 2610 2494 1531 161 10 64 chr1 229918492 229918752 -52274912 - AluJo SINE Alu -30 282 38 2381 75 0 7 chr1 229918752 229919047 -52274617 + AluSc SINE Alu 1 293 -16 1531 161 10 64 chr1 229919047 229919084 -52274580 - AluJo SINE Alu -274 38 1 1552 191 88 116 chr1 229919084 229919095 -52274569 - Charlie2 DNA MER1_type -368 2494 2484 3012 146 14 26 chr1 229919095 229919130 -52274534 - L1MB8 LINE L1 -2 6176 6142 2078 124 0 3 chr1 229919130 229919438 -52274226 + AluSg SINE Alu 1 307 0 3012 146 14 26 chr1 229919438 229919907 -52273757 - L1MB8 LINE L1 -36 6142 5677 1552 191 88 116 chr1 229919907 229919960 -52273704 - Charlie2 DNA MER1_type -378 2484 2431 2137 131 0 0 chr1 229919960 229920272 -52273392 + AluSx SINE Alu 1 312 0 1552 191 88 116 chr1 229920272 229920764 -52272900 - Charlie2 DNA MER1_type -431 2431 1927 870 180 60 7 chr1 229920764 229920914 -52272750 + FAM SINE Alu 1 158 -17 381 22 0 0 chr1 229920919 229920965 -52272699 + (TG)n Simple_repeat Simple_repeat 2 47 0 1552 191 88 116 chr1 229920965 229921058 -52272606 - Charlie2 DNA MER1_type -939 1923 1858 250 230 33 64 chr1 229921053 229921241 -52272423 - Charlie2 DNA MER1_type -2453 329 83 * 655 250 155 0 chr1 229921649 229921849 -52271815 + MIR SINE MIR 1 231 -31 2647 235 82 51 chr1 229922143 229922768 -52270896 + L2 LINE L2 2054 2718 -595 1813 154 11 7 chr1 229922768 229923054 -52270610 - AluJb SINE Alu -25 287 1 2647 235 82 51 chr1 229923054 229923405 -52270259 + L2 LINE L2 2718 3056 -257 227 196 39 0 chr1 229924214 229924265 -52269399 + MIR SINE MIR 36 88 -174 375 299 58 58 chr1 229925858 229926032 -52267632 - MER5A DNA MER1_type -1 188 15 2195 109 3 3 chr1 229926176 229926478 -52267186 + AluSq SINE Alu 1 302 -11 277 287 40 10 chr1 229926636 229926737 -52266927 - MIR SINE MIR -34 228 125 201 74 37 37 chr1 229927585 229927639 -52266025 + (TTTTTG)n Simple_repeat Simple_repeat 1 54 0 531 97 14 0 chr1 229927641 229927713 -52265951 - HY3 scRNA scRNA -28 73 1 251 318 78 16 chr1 229927721 229927850 -52265814 - L2 LINE L2 -572 2742 2606 222 37 0 0 chr1 229928116 229928143 -52265521 + (ATG)n Simple_repeat Simple_repeat 3 29 0 355 346 67 51 chr1 229928153 229928399 -52265265 - L2 LINE L2 -804 2510 2256 2273 100 0 3 chr1 229928399 229928699 -52264965 + AluSg SINE Alu 1 299 -11 355 346 67 51 chr1 229928699 229928767 -52264897 - L2 LINE L2 -1058 2256 2191 364 294 113 29 chr1 229928872 229929147 -52264517 - L2 LINE L2 -7 3306 3009 1067 216 30 13 chr1 229929156 229929392 -52264272 - MIR SINE MIR -10 252 13 208 336 19 57 chr1 229929576 229929694 -52263970 + MIR SINE MIR 39 151 -69 391 283 73 107 chr1 229930427 229930922 -52262742 + L2 LINE L2 2832 3309 -4 271 236 83 0 chr1 229931202 229931274 -52262390 + L1MB8 LINE L1 5441 5518 -2290 235 283 43 0 chr1 229931286 229931378 -52262286 + L1MB8 LINE L1 5566 5661 -460 345 222 36 144 chr1 229931396 229931482 -52262182 + L1MB8 LINE L1 5725 5819 -359 2451 93 0 0 chr1 229931482 229931793 -52261871 + AluSx SINE Alu 1 311 -1 345 222 36 144 chr1 229931793 229931841 -52261823 + L1MB8 LINE L1 5819 5834 -344 210 118 0 0 chr1 229931841 229931875 -52261789 + (TG)n Simple_repeat Simple_repeat 2 35 0 345 222 36 144 chr1 229931875 229931933 -52261731 + L1MB8 LINE L1 5834 5897 -281 1741 150 38 17 chr1 229931938 229932225 -52261439 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr1 229932282 229932305 -52261359 + AT_rich Low_complexity Low_complexity 1 23 0 1890 156 3 3 chr1 229933550 229933838 -52259826 - AluJo SINE Alu -16 296 9 24 32 0 0 chr1 229934233 229934264 -52259400 + AT_rich Low_complexity Low_complexity 1 31 0 729 360 76 5 chr1 229936192 229936612 -52257052 + L2 LINE L2 807 1256 -2058 937 182 0 12 chr1 229936622 229936787 -52256877 - AluJb SINE Alu -14 298 136 1295 222 95 0 chr1 229937056 229937362 -52256302 + L2 LINE L2 2474 2808 -506 1269 146 10 0 chr1 229937362 229937561 -52256103 + MER3 DNA MER1_type 1 201 -8 1131 234 31 55 chr1 229937654 229938082 -52255582 + L2 LINE L2 2709 3114 -199 811 146 0 16 chr1 229938092 229938215 -52255449 - AluJb SINE Alu -188 124 4 351 252 267 0 chr1 229938223 229938354 -52255310 + L2 LINE L2 3117 3282 -31 405 39 0 0 chr1 229938356 229938407 -52255257 + (CA)n Simple_repeat Simple_repeat 1 51 0 192 197 229 0 chr1 229938611 229938672 -52254992 - MIR SINE MIR -119 143 69 2111 125 10 10 chr1 229938873 229939185 -52254479 + AluSx SINE Alu 1 312 0 2391 96 3 3 chr1 229939959 229940271 -52253393 - AluSx SINE Alu 0 312 1 394 252 206 21 chr1 229940814 229941100 -52252564 + L1ME4a LINE L1 5576 5914 -207 941 196 0 0 chr1 229941214 229941377 -52252287 - AluJo SINE Alu -30 282 120 21 36 0 0 chr1 229941426 229941454 -52252210 + AT_rich Low_complexity Low_complexity 1 28 0 357 125 250 23 chr1 229942925 229943013 -52250651 + L2 LINE L2 3206 3313 0 2375 81 7 10 chr1 229943202 229943512 -52250152 - AluSg SINE Alu -1 309 1 553 263 101 20 chr1 229943755 229944002 -52249662 + L2 LINE L2 3046 3312 -1 22 0 0 0 chr1 229944114 229944136 -52249528 + AT_rich Low_complexity Low_complexity 1 22 0 2320 97 10 3 chr1 229944216 229944524 -52249140 - AluSx SINE Alu -2 310 1 218 93 0 23 chr1 229945494 229945537 -52248127 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 1211 132 154 13 chr1 229945537 229945764 -52247900 - AluJo SINE Alu -20 292 34 2088 133 0 0 chr1 229945802 229946087 -52247577 - AluSx SINE Alu -27 285 1 23 0 0 0 chr1 229946247 229946270 -52247394 + AT_rich Low_complexity Low_complexity 1 23 0 246 333 17 51 chr1 229946474 229946591 -52247073 + L2 LINE L2 3198 3310 -3 246 32 0 0 chr1 229946889 229946920 -52246744 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1931 102 0 0 chr1 229946920 229947174 -52246490 - AluSx SINE Alu -58 254 1 2174 107 20 0 chr1 229947343 229947641 -52246023 - AluSq SINE Alu -9 304 1 1208 193 5 36 chr1 229947680 229947903 -52245761 + AluJo SINE Alu 6 221 -91 1279 103 0 11 chr1 229948006 229948180 -52245484 - AluSx SINE Alu -140 172 1 250 345 134 0 chr1 229948438 229948557 -52245107 + MIR SINE MIR 37 171 -91 976 198 11 16 chr1 229948657 229948844 -52244820 + MER20 DNA MER1_type 1 186 -33 319 185 0 0 chr1 229949032 229949086 -52244578 + MER20 DNA MER1_type 166 219 0 2302 74 3 10 chr1 229949381 229949677 -52243987 + AluSg1 SINE Alu 1 294 -15 844 192 70 13 chr1 229949919 229950075 -52243589 + FAM SINE Alu 1 165 -10 1354 145 20 0 chr1 229950130 229950330 -52243334 - AluSg/x SINE Alu -2 310 107 764 139 0 0 chr1 229950430 229950538 -52243126 - AluJb SINE Alu -200 112 5 2068 126 0 0 chr1 229950567 229950852 -52242812 + AluSx SINE Alu 14 298 -14 2014 138 0 0 chr1 229950856 229951152 -52242512 + AluJb SINE Alu 1 296 -16 280 288 206 6 chr1 229951515 229951685 -52241979 - MIR SINE MIR -12 250 47 2423 85 0 0 chr1 229953225 229953531 -52240133 + AluY SINE Alu 1 306 -5 223 228 228 0 chr1 229953567 229953659 -52240005 - L2 LINE L2 -2 3311 3199 180 306 0 42 chr1 229953766 229953838 -52239826 - L2 LINE L2 -254 3018 2950 207 324 204 36 chr1 229953873 229954379 -52239285 - L2 LINE L2 -2198 1116 500 2306 87 0 0 chr1 229954379 229954679 -52238985 + AluY SINE Alu 1 300 -11 207 324 204 36 chr1 229954679 229954749 -52238915 - L2 LINE L2 -2814 500 443 628 301 173 26 chr1 229954758 229955174 -52238490 + L2 LINE L2 2475 2951 -363 196 343 68 0 chr1 229955165 229955238 -52238426 + L2 LINE L2 3193 3270 -2 * 202 324 99 0 chr1 229955293 229955404 -52238260 - L2 LINE L2 -2992 322 201 1446 206 74 10 chr1 230055468 230055862 -52137802 + L1MB7 LINE L1 4442 4860 -1286 338 270 0 0 chr1 230056843 230056932 -52136732 - L1M4 LINE L1 -1279 4867 4779 1561 76 5 0 chr1 230057057 230057255 -52136409 + AluSp SINE Alu 103 301 -12 3419 181 42 23 chr1 230057257 230058322 -52135342 + L1MB7 LINE L1 4951 6024 -160 195 42 0 0 chr1 230058460 230058484 -52135180 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1873 150 27 3 chr1 230058529 230058822 -52134842 + AluSx SINE Alu 2 301 -11 310 50 0 0 chr1 230059887 230059927 -52133737 - Alu SINE Alu -261 40 1 192 167 28 0 chr1 230059942 230059978 -52133686 + L2 LINE L2 2282 2318 -996 1537 133 114 26 chr1 230060541 230060805 -52132859 - AluJb SINE Alu -11 301 15 472 219 112 62 chr1 230060845 230061023 -52132641 - MIR SINE MIR -24 238 52 2253 72 0 93 chr1 230061448 230061780 -52131884 + AluSx SINE Alu 1 301 -11 2079 133 0 25 chr1 230062001 230062317 -52131347 + AluSx SINE Alu 1 308 -4 1227 243 70 29 chr1 230062591 230063035 -52130629 - LTR16B LTR ERVL -2 462 1 2174 113 10 0 chr1 230063311 230063613 -52130051 + AluSp SINE Alu 1 305 -8 1925 145 0 0 chr1 230064211 230064487 -52129177 - AluSx SINE Alu -17 295 20 2159 113 0 14 chr1 230064563 230064854 -52128810 + AluSx SINE Alu 1 287 -25 2173 102 17 0 chr1 230065100 230065395 -52128269 + AluSq SINE Alu 1 300 -13 2007 127 3 0 chr1 230065654 230065964 -52127700 - AluSx SINE Alu 0 311 1 248 140 0 0 chr1 230066010 230066060 -52127604 + Alu SINE Alu 253 302 0 215 274 196 10 chr1 230066134 230066236 -52127428 - MIR3 SINE MIR -47 161 41 31 96 0 0 chr1 230066841 230066935 -52126729 + AT_rich Low_complexity Low_complexity 1 94 0 860 161 29 0 chr1 230066957 230067094 -52126570 - FLAM_C SINE Alu -2 141 1 26 0 0 0 chr1 230067892 230067918 -52125746 + AT_rich Low_complexity Low_complexity 1 26 0 2449 75 3 0 chr1 230068573 230068881 -52124783 + AluY SINE Alu 1 309 -2 656 68 0 10 chr1 230069452 230069555 -52124109 + Alu SINE Alu 204 305 -6 1109 198 94 119 chr1 230069681 230070372 -52123292 - L1MC5 LINE L1 -50 7911 7238 298 194 45 0 chr1 230070388 230070455 -52123209 - L1MC5 LINE L1 -813 7148 7079 233 167 0 0 chr1 230071313 230071355 -52122309 - L1MC5 LINE L1 -892 7069 7028 597 302 101 64 chr1 230071456 230071970 -52121694 - L2 LINE L2 -448 2866 2334 387 171 101 0 chr1 230071987 230072096 -52121568 - L1MC4 LINE L1 -37 8005 7782 222 37 0 0 chr1 230072114 230072141 -52121523 + (TG)n Simple_repeat Simple_repeat 2 28 0 1948 96 92 11 chr1 230072172 230072444 -52121220 - AluSq SINE Alu -16 297 4 2292 107 3 3 chr1 230072446 230072746 -52120918 - AluSx SINE Alu -11 301 2 22 0 0 0 chr1 230072791 230072813 -52120851 + AT_rich Low_complexity Low_complexity 1 22 0 239 229 119 25 chr1 230072813 230072931 -52120733 - L1MC4 LINE L1 -146 7896 7768 1236 127 6 0 chr1 230072931 230073104 -52120560 + AluSq SINE Alu 134 307 -6 299 326 124 39 chr1 230073250 230073636 -52120028 - L2 LINE L2 -658 2656 2238 362 330 77 23 chr1 230073768 230073989 -52119675 - L1ME4a LINE L1 -217 5904 5672 239 226 0 16 chr1 230074022 230074084 -52119580 - L1MC4 LINE L1 -261 7781 7721 23 0 0 0 chr1 230074291 230074314 -52119350 + AT_rich Low_complexity Low_complexity 1 23 0 2207 108 0 0 chr1 230074320 230074606 -52119058 - AluSx SINE Alu -25 287 2 305 336 47 0 chr1 230074836 230074943 -52118721 + L2 LINE L2 3123 3234 -38 23 0 0 0 chr1 230075584 230075607 -52118057 + AT_rich Low_complexity Low_complexity 1 23 0 1068 218 19 15 chr1 230075675 230075970 -52117694 + L1MC5 LINE L1 6962 7256 -733 772 277 73 3 chr1 230076051 230076354 -52117310 + L1MC5 LINE L1 7249 7572 -389 23 0 0 0 chr1 230076365 230076388 -52117276 + AT_rich Low_complexity Low_complexity 1 23 0 1016 215 64 39 chr1 230076702 230077032 -52116632 + MER44D DNA MER2_type 2 609 0 615 287 38 5 chr1 230077053 230077262 -52116402 - MLT1J LTR MaLR -290 221 6 395 297 26 99 chr1 230077375 230077607 -52116057 + MLT1K LTR MaLR 13 227 -361 2154 89 0 83 chr1 230077753 230078079 -52115585 - AluSq SINE Alu -14 299 1 25 51 0 0 chr1 230078227 230078266 -52115398 + AT_rich Low_complexity Low_complexity 1 39 0 322 312 117 13 chr1 230078926 230079080 -52114584 - L3b LINE CR1 -9 1574 1405 1189 96 0 19 chr1 230079206 230079363 -52114301 - AluSq SINE Alu -159 154 1 1794 175 3 32 chr1 230079562 230079871 -52113793 - AluJb SINE Alu -12 300 1 756 253 143 55 chr1 230080080 230080310 -52113354 - L2 LINE L2 -7 3306 3029 1663 204 25 8 chr1 230080310 230080668 -52112996 + MLT1A1 LTR MaLR 2 365 0 756 253 143 55 chr1 230080668 230080816 -52112848 - L2 LINE L2 -284 3029 2895 509 301 151 31 chr1 230081503 230081984 -52111680 - L2 LINE L2 -93 3220 2694 943 293 86 28 chr1 230081990 230082489 -52111175 + L1ME LINE L1 2 529 -5541 240 237 164 114 chr1 230082639 230082782 -52110882 - L2 LINE L2 -1469 1845 1711 2073 144 0 0 chr1 230082782 230083081 -52110583 - AluSx SINE Alu -13 299 1 240 237 164 114 chr1 230083081 230083093 -52110571 - L2 LINE L2 -1603 1711 1701 2232 98 14 0 chr1 230083093 230083390 -52110274 - AluSx SINE Alu -11 301 1 240 237 164 114 chr1 230083390 230083452 -52110212 - L2 LINE L2 -1613 1701 1616 527 194 161 58 chr1 230083461 230083580 -52110084 + MER5A DNA MER1_type 14 154 -35 1719 149 138 46 chr1 230083580 230083931 -52109733 + MSTC LTR MaLR 3 396 -32 2059 84 25 0 chr1 230083931 230084232 -52109432 - AluSg SINE Alu 0 308 1 1719 149 138 46 chr1 230084232 230084269 -52109395 + MSTC LTR MaLR 396 428 0 527 194 161 58 chr1 230084269 230084304 -52109360 + MER5A DNA MER1_type 154 184 -5 848 362 114 15 chr1 230084504 230085187 -52108477 - L2 LINE L2 -1907 1407 657 2063 144 0 0 chr1 230085443 230085741 -52107923 - AluSx SINE Alu -14 298 1 2416 82 0 0 chr1 230085785 230086089 -52107575 - AluSc SINE Alu -5 304 1 21 0 0 0 chr1 230086211 230086232 -52107432 + AT_rich Low_complexity Low_complexity 1 21 0 2154 98 32 0 chr1 230086326 230086611 -52107053 - AluSg SINE Alu -16 294 1 234 264 28 0 chr1 230086923 230086995 -52106669 - L1ME3A LINE L1 -5 6165 6092 738 326 68 3 chr1 230087063 230087431 -52106233 + LTR16B LTR ERVL 73 464 0 963 215 11 45 chr1 230087431 230087696 -52105968 - L1ME3A LINE L1 -83 6087 5832 191 316 90 38 chr1 230088036 230088169 -52105495 + L2 LINE L2 1842 1981 -1333 1066 177 86 115 chr1 230088170 230088543 -52105121 + MER57A LTR ERV1 42 403 0 612 293 36 12 chr1 230088596 230088849 -52104815 + MIR SINE MIR 3 261 -1 1286 155 10 29 chr1 230088979 230089186 -52104478 - AluJo SINE Alu -21 291 89 409 321 67 31 chr1 230089187 230089380 -52104284 + L2 LINE L2 2153 2352 -962 480 250 45 0 chr1 230090214 230090346 -52103318 + MER69 DNA AcHobo 10 147 -1079 415 274 37 40 chr1 230090483 230090859 -52102805 + L1M4 LINE L1 2506 2880 -3266 2158 108 4 0 chr1 230090966 230091245 -52102419 + AluSc SINE Alu 2 281 -28 1945 161 10 6 chr1 230091301 230091612 -52102052 + AluJb SINE Alu 1 312 0 297 0 0 0 chr1 230091644 230091677 -52101987 + (CA)n Simple_repeat Simple_repeat 2 34 0 441 263 71 54 chr1 230091677 230092158 -52101506 + L1M4 LINE L1 2961 3432 -2714 2126 117 0 23 chr1 230092158 230092457 -52101207 - AluSx SINE Alu -20 292 1 441 263 71 54 chr1 230092457 230093005 -52100659 + L1M4 LINE L1 3432 4191 -1955 512 233 83 45 chr1 230093126 230093392 -52100272 + L1M4 LINE L1 4387 4662 -1484 2478 74 3 0 chr1 230094289 230094587 -52099077 - AluSp SINE Alu -14 299 1 25 0 0 0 chr1 230095257 230095282 -52098382 + AT_rich Low_complexity Low_complexity 1 25 0 2170 115 10 0 chr1 230096464 230096760 -52096904 + AluSq SINE Alu 1 299 -14 450 304 62 33 chr1 230097219 230097459 -52096205 - L2 LINE L2 -836 2478 2232 295 218 314 0 chr1 230097908 230098032 -52095632 - MIR SINE MIR -34 228 66 350 270 70 40 chr1 230099140 230099240 -52094424 + L2 LINE L2 3169 3271 -1 203 281 34 90 chr1 230099534 230099558 -52094106 + MIR SINE MIR 50 74 -134 2311 125 0 0 chr1 230099558 230099870 -52093794 - AluSx SINE Alu 0 312 1 203 281 34 90 chr1 230099870 230099934 -52093730 + MIR SINE MIR 74 133 -75 539 259 86 23 chr1 230099957 230100177 -52093487 + L2 LINE L2 2827 3060 -253 198 263 81 65 chr1 230100412 230100598 -52093066 + L2 LINE L2 2153 2341 -973 3045 197 124 32 chr1 230100598 230101159 -52092505 + L1MC4 LINE L1 6491 6999 -1043 2533 59 0 0 chr1 230101159 230101466 -52092198 + AluY SINE Alu 1 307 -4 3045 197 124 32 chr1 230101466 230101873 -52091791 + L1MC4 LINE L1 6999 7548 -494 1702 145 36 50 chr1 230102723 230103026 -52090638 - AluSx SINE Alu -11 301 3 2094 12 92 0 chr1 230103134 230103384 -52090280 - AluYa5 SINE Alu -38 273 1 241 276 133 31 chr1 230103390 230103586 -52090078 + MLT1K LTR MaLR 345 560 -28 445 289 203 34 chr1 230103615 230103914 -52089750 + L2 LINE L2 1820 2067 -1247 1524 158 81 15 chr1 230103914 230104186 -52089478 + AluJo SINE Alu 1 290 -22 2502 47 0 3 chr1 230104194 230104492 -52089172 + AluY SINE Alu 1 297 -14 445 289 203 34 chr1 230104492 230104940 -52088724 + L2 LINE L2 2072 2704 -610 383 53 0 0 chr1 230104940 230104997 -52088667 - L1MB3 LINE L1 -7 6176 6120 764 142 8 8 chr1 230105343 230105470 -52088194 + AluSq/x SINE Alu 3 129 -184 333 333 28 35 chr1 230105477 230105618 -52088046 + MIR SINE MIR 5 144 -118 1122 128 44 75 chr1 230105762 230105988 -52087676 + MER20 DNA MER1_type 1 219 0 257 324 10 0 chr1 230106001 230106103 -52087561 + MIR SINE MIR 144 246 -16 185 265 0 20 chr1 230106360 230106409 -52087255 + L2 LINE L2 3008 3055 -258 216 308 0 13 chr1 230106605 230106683 -52086981 + L2 LINE L2 1964 2040 -1274 668 269 110 9 chr1 230106899 230107126 -52086538 + MIR SINE MIR 5 254 -8 2224 103 0 0 chr1 230107130 230107454 -52086210 - AluSx SINE Alu 0 324 1 190 265 0 73 chr1 230107555 230107623 -52086041 + L2 LINE L2 2583 2645 -669 414 262 233 6 chr1 230108909 230109081 -52084583 + MIR SINE MIR 1 211 -51 469 284 68 26 chr1 230109124 230109314 -52084350 + MIR SINE MIR 31 228 -34 207 0 0 0 chr1 230111469 230111492 -52082172 + (CCG)n Simple_repeat Simple_repeat 3 25 0 239 300 64 18 chr1 230112173 230112283 -52081381 + LTR67 LTR ERVL 428 542 -15 235 250 39 0 chr1 230112355 230112407 -52081257 - MIR3 SINE MIR -2 206 153 259 235 0 78 chr1 230112411 230112513 -52081151 + MER112 DNA MER1_type 6 99 -161 287 221 12 58 chr1 230112556 230112642 -52081022 + MER112 DNA MER1_type 178 259 -1 2169 140 0 0 chr1 230112642 230112949 -52080715 + AluSx SINE Alu 1 307 -5 2026 136 0 10 chr1 230113550 230113874 -52079790 - AluSx SINE Alu 0 312 1 856 182 7 7 chr1 230114057 230114273 -52079391 + FRAM SINE Alu 1 80 0 518 335 58 4 chr1 230114840 230115082 -52078582 - L2 LINE L2 -136 3177 2923 994 314 58 13 chr1 230115252 230115770 -52077894 - L2 LINE L2 -64 3249 2702 2268 112 0 3 chr1 230115845 230116148 -52077516 - AluSx SINE Alu -10 302 1 21 0 0 0 chr1 230116426 230116447 -52077217 + AT_rich Low_complexity Low_complexity 1 21 0 1130 152 6 0 chr1 230116893 230117071 -52076593 + AluSg/x SINE Alu 134 312 0 206 195 39 39 chr1 230117173 230117250 -52076414 + GA-rich Low_complexity Low_complexity 1 77 0 1033 155 12 0 chr1 230118098 230118266 -52075398 + AluJb SINE Alu 123 292 -20 827 142 0 0 chr1 230118273 230118386 -52075278 + FLAM_C SINE Alu 1 113 -30 23 33 0 0 chr1 230118545 230118575 -52075089 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr1 230118918 230118960 -52074704 + AT_rich Low_complexity Low_complexity 1 42 0 358 276 0 16 chr1 230119428 230119555 -52074109 - L1ME4a LINE L1 -257 5864 5740 1885 149 3 19 chr1 230121844 230122153 -52071511 - AluJb SINE Alu 0 312 9 250 250 11 34 chr1 230122516 230122604 -52071060 - MIR SINE MIR -91 171 86 379 218 83 32 chr1 230122612 230122628 -52071036 - L1MA10 LINE L1 -2 6332 6317 1962 209 112 19 chr1 230122628 230123100 -52070564 - L1ME1 LINE L1 -5 6161 5612 1428 163 113 21 chr1 230123100 230123382 -52070282 - AluJb SINE Alu -4 308 1 1962 209 112 19 chr1 230123382 230123554 -52070110 - L1ME1 LINE L1 -554 5612 5457 180 0 0 0 chr1 230123681 230123701 -52069963 + (CA)n Simple_repeat Simple_repeat 1 20 0 183 242 97 16 chr1 230123731 230123793 -52069871 - L3b LINE CR1 -368 1215 1149 1982 147 0 31 chr1 230123795 230124114 -52069550 - AluJb SINE Alu -2 310 2 2045 128 0 0 chr1 230124702 230125027 -52068637 - AluSc SINE Alu 0 325 1 2314 92 49 30 chr1 230125686 230126054 -52067610 + THE1C LTR MaLR 1 375 0 352 295 93 39 chr1 230126829 230127110 -52066554 + HAL1 LINE L1 1113 1377 -1130 1833 75 72 106 chr1 230127110 230127152 -52066512 - AluSc SINE Alu 0 309 267 243 0 0 0 chr1 230127152 230127179 -52066485 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1833 75 72 106 chr1 230127179 230127456 -52066208 - AluSc SINE Alu -42 267 1 352 295 93 39 chr1 230127456 230127692 -52065972 + HAL1 LINE L1 1377 1658 -849 2047 145 0 7 chr1 230127756 230128045 -52065619 - AluSx SINE Alu -25 287 1 227 131 33 33 chr1 230128062 230128116 -52065548 + (TA)n Simple_repeat Simple_repeat 2 58 -4 1605 225 143 20 chr1 230128116 230128592 -52065072 - MLT1F1 LTR MaLR -3 564 22 1973 127 0 10 chr1 230128592 230128883 -52064781 - AluSg SINE Alu -22 288 1 1605 225 143 20 chr1 230128883 230128908 -52064756 - MLT1F1 LTR MaLR -545 22 1 227 131 33 33 chr1 230128908 230128914 -52064750 + (TA)n Simple_repeat Simple_repeat 57 62 0 402 233 86 0 chr1 230129179 230129295 -52064369 - MIR SINE MIR -14 248 123 4601 178 30 48 chr1 230129522 230130014 -52063650 + L1MD2 LINE L1 4963 5462 -897 277 74 19 19 chr1 230130014 230130068 -52063596 + (TAAAA)n Simple_repeat Simple_repeat 3 56 0 4601 178 30 48 chr1 230130068 230130435 -52063229 + L1MD2 LINE L1 5462 5834 -525 3211 138 38 5 chr1 230130435 230131007 -52062657 + L1MA8 LINE L1 5695 6287 -4 4601 178 30 48 chr1 230131007 230131354 -52062310 + L1MD2 LINE L1 5834 6143 -216 186 103 0 0 chr1 230131354 230131383 -52062281 + (CA)n Simple_repeat Simple_repeat 2 30 0 4601 178 30 48 chr1 230131383 230131572 -52062092 + L1MD2 LINE L1 6143 6334 -25 827 129 0 50 chr1 230131612 230131752 -52061912 - FLAM_C SINE Alu 0 133 1 2120 119 20 3 chr1 230132161 230132463 -52061201 + AluSq SINE Alu 1 307 -6 1699 152 7 42 chr1 230132974 230133284 -52060380 - AluJb SINE Alu -13 299 1 2380 92 3 0 chr1 230134090 230134394 -52059270 - AluSg SINE Alu -5 305 1 1110 237 104 50 chr1 230135667 230136301 -52057363 - L2 LINE L2 0 3313 2664 5510 219 128 24 chr1 230136409 230136683 -52056981 - L1ME2 LINE L1 -209 6349 6105 1510 153 114 21 chr1 230136683 230136964 -52056700 - AluJb SINE Alu -5 307 1 5510 219 128 24 chr1 230136964 230137378 -52056286 - L1ME2 LINE L1 -453 6105 5735 1774 162 16 32 chr1 230137378 230137687 -52055977 - AluJb SINE Alu -8 304 1 5510 219 128 24 chr1 230137687 230139278 -52054386 - L1ME2 LINE L1 -823 5735 4311 2144 119 7 3 chr1 230139278 230139588 -52054076 - AluSx SINE Alu -1 311 1 2171 121 0 7 chr1 230139592 230139889 -52053775 - AluSx SINE Alu -17 295 1 5510 219 128 24 chr1 230139889 230140277 -52053387 - L1ME2 LINE L1 -2249 4309 3396 2232 113 7 0 chr1 230140279 230140581 -52053083 - AluSx SINE Alu -8 304 1 7911 130 35 18 chr1 230140587 230142013 -52051651 + Tigger1 DNA MER2_type 969 2418 0 3638 188 54 15 chr1 230142013 230142530 -52051134 - L1MC1 LINE L1 -410 6203 5708 2213 112 0 34 chr1 230142530 230142851 -52050813 - AluSx SINE Alu -2 310 1 3638 188 54 15 chr1 230142851 230143915 -52049749 - L1MC1 LINE L1 -905 5708 4564 3080 177 35 45 chr1 230143915 230144662 -52049002 - L1MC1 LINE L1 -5670 756 18 2336 96 0 0 chr1 230144751 230145044 -52048620 - AluSq SINE Alu -20 293 1 514 266 84 55 chr1 230145095 230145475 -52048189 - L1ME2 LINE L1 -4711 1829 1439 1514 123 0 0 chr1 230145674 230145877 -52047787 + AluSg/x SINE Alu 92 294 -18 2005 127 65 76 chr1 230146179 230146280 -52047384 + L1MD1 LINE L1 5790 5891 -351 1895 102 68 8 chr1 230146280 230146546 -52047118 + AluSx SINE Alu 1 282 -30 2005 127 65 76 chr1 230146546 230146902 -52046762 + L1MD1 LINE L1 5891 6242 0 482 332 20 20 chr1 230147033 230147232 -52046432 + MIR SINE MIR 63 261 -1 395 169 26 13 chr1 230148135 230148212 -52045452 + Tigger2 DNA MER2_type 1 78 -2640 687 229 110 31 chr1 230148246 230148473 -52045191 - L1MC4a LINE L1 -998 6810 6566 667 199 48 14 chr1 230148861 230149007 -52044657 - MIR SINE MIR -104 158 8 23 0 0 0 chr1 230149078 230149101 -52044563 + AT_rich Low_complexity Low_complexity 1 23 0 423 0 0 0 chr1 230149271 230149318 -52044346 + (CA)n Simple_repeat Simple_repeat 2 48 0 1237 206 174 67 chr1 230149585 230150095 -52043569 - MLT1F1 LTR MaLR -2 565 1 2218 123 0 0 chr1 230150968 230151268 -52042396 + AluSc SINE Alu 1 300 -9 229 269 63 75 chr1 230151294 230151562 -52042102 + L1ME LINE L1 5651 5915 -206 1723 134 3 104 chr1 230151808 230152136 -52041528 + AluJb SINE Alu 1 295 -17 189 278 56 0 chr1 230154014 230154068 -52039596 - L2 LINE L2 -1 3312 3256 258 362 47 24 chr1 230154491 230154618 -52039046 + MIR SINE MIR 17 146 -62 831 215 65 103 chr1 230154636 230155003 -52038661 - MER57A LTR ERV1 -9 394 42 341 301 128 58 chr1 230155255 230155735 -52037929 - L2 LINE L2 -812 2502 1968 1734 94 0 0 chr1 230155735 230155958 -52037706 + AluSg/x SINE Alu 83 305 -5 341 301 128 58 chr1 230155958 230156092 -52037572 - L2 LINE L2 -1346 1968 1845 24 0 0 0 chr1 230156121 230156145 -52037519 + AT_rich Low_complexity Low_complexity 1 24 0 185 0 40 0 chr1 230156194 230156219 -52037445 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1735 42 5 0 chr1 230156219 230156435 -52037229 - L1PA5 LINE L1 -13 6141 5925 271 297 55 50 chr1 230156641 230156823 -52036841 - MIR3 SINE MIR -10 198 16 274 366 17 11 chr1 230156967 230157142 -52036522 + MIR SINE MIR 33 208 -54 348 280 204 0 chr1 230157407 230157539 -52036125 + MIR SINE MIR 104 262 0 186 386 50 10 chr1 230158518 230158619 -52035045 - L2 LINE L2 -8 3264 3160 2066 136 0 3 chr1 230158828 230159136 -52034528 - AluSg SINE Alu -3 307 1 2135 144 0 0 chr1 230159136 230159448 -52034216 - AluSx SINE Alu 0 312 1 378 303 56 51 chr1 230159573 230159751 -52033913 + MIR SINE MIR 34 212 -50 22 0 0 0 chr1 230159832 230159854 -52033810 + AT_rich Low_complexity Low_complexity 1 22 0 313 244 23 12 chr1 230160017 230160103 -52033561 + MIR SINE MIR 65 151 -111 1955 151 0 4 chr1 230160130 230160711 -52032953 + AluSx SINE Alu 1 283 -29 29481 60 12 4 chr1 230160954 230165138 -52028526 - L1PA3 LINE L1 -129 6026 1797 2297 101 0 0 chr1 230165138 230165434 -52028230 + AluSc SINE Alu 1 296 -13 29481 60 12 4 chr1 230165434 230165862 -52027802 - L1PA3 LINE L1 -4358 1797 1374 257 314 91 16 chr1 230166400 230166521 -52027143 + MIR SINE MIR 13 142 -120 594 223 181 6 chr1 230167336 230167502 -52026162 + MIR SINE MIR 28 222 -40 2032 136 0 0 chr1 230168078 230168380 -52025284 - AluY SINE Alu -9 302 1 197 302 116 0 chr1 230169104 230169190 -52024474 + MIR SINE MIR 91 186 -76 191 268 14 42 chr1 230169240 230169311 -52024353 + MIR SINE MIR 181 249 -13 185 340 0 0 chr1 230169516 230169566 -52024098 - L2 LINE L2 -20 3252 3203 448 198 0 22 chr1 230169651 230169742 -52023922 + MER5B DNA MER1_type 1 89 -89 692 280 90 45 chr1 230170153 230170751 -52022913 + L1MC4a LINE L1 5044 5668 -743 207 0 0 0 chr1 230170898 230170921 -52022743 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 469 15 0 44 chr1 230170920 230170988 -52022676 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 206 409 72 16 chr1 230171008 230171314 -52022350 - L2 LINE L2 -635 2679 2357 2192 112 0 3 chr1 230171894 230172197 -52021467 - AluSx SINE Alu -10 302 1 185 182 0 0 chr1 230172279 230172312 -52021352 + L2 LINE L2 3273 3305 -8 3266 233 72 98 chr1 230172749 230172806 -52020858 + L1MC4a LINE L1 5771 5828 -1980 2259 110 0 3 chr1 230172806 230173115 -52020549 + AluSg SINE Alu 3 310 0 3266 233 72 98 chr1 230173115 230173607 -52020057 + L1MC4a LINE L1 5828 6331 -1477 2237 92 0 0 chr1 230173607 230173913 -52019751 - AluSx SINE Alu 0 306 1 3266 233 72 98 chr1 230173913 230175120 -52018544 + L1MC4a LINE L1 6331 7483 -325 806 203 94 0 chr1 230175114 230175306 -52018358 + L1MD3 LINE L1 7770 7979 -16 * 721 248 63 41 chr1 230175316 230175634 -52018030 + L1MC4 LINE L1 7000 7324 -718 1113 194 66 0 chr1 230175642 230175853 -52017811 + Tigger7 DNA MER2_type 8 232 -318 583 158 50 0 chr1 230175855 230175956 -52017708 + Tigger7 DNA MER2_type 2382 2487 0 1019 224 73 13 chr1 230175956 230176259 -52017405 + L1MC4 LINE L1 7323 7643 -399 616 185 25 99 chr1 230176317 230176433 -52017231 + L1MC4 LINE L1 7788 7805 -190 324 0 0 0 chr1 230176433 230176469 -52017195 + (TG)n Simple_repeat Simple_repeat 2 37 0 616 185 25 99 chr1 230176469 230176647 -52017017 + L1MC4 LINE L1 7805 7994 -1 834 139 0 0 chr1 230176948 230177070 -52016594 + AluSq/x SINE Alu 1 122 -190 1825 163 3 0 chr1 230177147 230177436 -52016228 + AluJo SINE Alu 21 310 -2 22 56 0 0 chr1 230177627 230177663 -52016001 + AT_rich Low_complexity Low_complexity 1 36 0 233 271 131 0 chr1 230177796 230177903 -52015761 + MER103 DNA DNA 45 165 -1 1832 137 31 10 chr1 230178254 230178546 -52015118 + AluSx SINE Alu 1 298 -14 480 223 0 74 chr1 230178929 230179050 -52014614 - MIR3 SINE MIR -35 173 62 311 125 36 0 chr1 230179223 230179279 -52014385 + MER53 DNA DNA 113 170 -19 267 312 0 0 chr1 230181327 230181436 -52012228 + (TA)n Simple_repeat Simple_repeat 1 109 0 236 242 44 66 chr1 230181451 230181542 -52012122 - L1MC4 LINE L1 -1339 6703 6615 192 273 0 0 chr1 230181576 230181642 -52012022 + (TA)n Simple_repeat Simple_repeat 1 66 0 376 460 0 0 chr1 230181659 230181835 -52011829 + (CA)n Simple_repeat Simple_repeat 2 177 0 * 464 394 11 0 chr1 230181710 230181885 -52011779 + (CATA)n Simple_repeat Simple_repeat 3 179 0 253 255 0 43 chr1 230181895 230181989 -52011675 + L1MC4 LINE L1 6614 6703 -1339 * 262 256 47 0 chr1 230181905 230181991 -52011673 - L1MC4 LINE L1 -1339 6703 6614 2346 84 0 3 chr1 230182002 230182298 -52011366 - AluSq SINE Alu -18 295 1 2096 116 21 0 chr1 230182309 230182593 -52011071 - AluSg SINE Alu -18 292 3 250 313 0 0 chr1 230183244 230183311 -52010353 - L2 LINE L2 0 3313 3247 354 312 39 0 chr1 230183800 230183954 -52009710 - L1MEd LINE L1 -5948 171 12 1029 151 0 0 chr1 230183975 230184134 -52009530 - AluSg/x SINE Alu -6 306 148 397 192 30 0 chr1 230184240 230184339 -52009325 + GA-rich Low_complexity Low_complexity 1 102 0 578 255 127 55 chr1 230184523 230185060 -52008604 - L1ME3A LINE L1 -310 5860 5262 * 659 271 153 33 chr1 230185047 230185565 -52008099 - L1ME3A LINE L1 -1164 4982 4406 288 322 41 29 chr1 230185705 230185950 -52007714 - L1ME3A LINE L1 -1955 4191 3944 2284 85 0 0 chr1 230186097 230186433 -52007231 + AluY SINE Alu 1 336 0 23 33 0 0 chr1 230186715 230186745 -52006919 + AT_rich Low_complexity Low_complexity 1 30 0 2278 108 3 3 chr1 230187267 230187574 -52006090 - AluSx SINE Alu -5 307 1 2202 106 0 3 chr1 230188722 230189014 -52004650 + AluSg SINE Alu 1 291 -19 27 49 0 0 chr1 230189189 230189230 -52004434 + AT_rich Low_complexity Low_complexity 1 41 0 1563 171 75 0 chr1 230189704 230189985 -52003679 + AluJo SINE Alu 1 302 -10 492 244 197 26 chr1 230189985 230190178 -52003486 - L2 LINE L2 -829 2485 2260 576 261 75 83 chr1 230190350 230190410 -52003254 + L2 LINE L2 1554 1613 -1701 2503 68 6 3 chr1 230190410 230190733 -52002931 - L1PB1 LINE L1 -1 6150 5827 576 261 75 83 chr1 230190733 230191128 -52002536 + L2 LINE L2 1613 2005 -1309 844 265 134 6 chr1 230191179 230191492 -52002172 + L2 LINE L2 2277 2629 -685 200 357 31 39 chr1 230191534 230191663 -52002001 + L2 LINE L2 2751 2878 -436 468 226 0 12 chr1 230191686 230191770 -52001894 + L2 LINE L2 3228 3310 -3 5913 165 26 7 chr1 230192294 230194162 -51999502 + L1PA13 LINE L1 4253 6157 -6 387 256 23 0 chr1 230194744 230194830 -51998834 + L2 LINE L2 3226 3313 0 248 233 17 17 chr1 230194840 230194900 -51998764 + L2 LINE L2 3245 3304 -9 1680 189 10 3 chr1 230195338 230195635 -51998029 - AluJo SINE Alu -13 299 1 2129 126 3 0 chr1 230195892 230196185 -51997479 - AluSx SINE Alu -18 294 1 24 32 0 0 chr1 230196525 230196556 -51997108 + AT_rich Low_complexity Low_complexity 1 31 0 1912 157 3 0 chr1 230196689 230196988 -51996676 - AluJb SINE Alu -12 300 1 970 178 15 25 chr1 230197172 230197374 -51996290 - AluJ SINE Alu 0 312 113 21 57 0 0 chr1 230197746 230197781 -51995883 + AT_rich Low_complexity Low_complexity 1 35 0 336 137 0 0 chr1 230197805 230197856 -51995808 - Alu SINE Alu -7 295 245 1012 236 59 0 chr1 230198788 230199025 -51994639 + MIR SINE MIR 12 262 0 198 0 0 0 chr1 230199945 230199967 -51993697 + (CA)n Simple_repeat Simple_repeat 1 22 0 1801 187 3 0 chr1 230200311 230200621 -51993043 - AluJb SINE Alu -1 311 1 766 177 0 31 chr1 230200865 230200995 -51992669 - AluJ SINE Alu -186 126 1 26 30 0 0 chr1 230201038 230201071 -51992593 + AT_rich Low_complexity Low_complexity 1 33 0 2364 66 17 0 chr1 230201090 230201391 -51992273 - AluSp SINE Alu -7 306 1 2076 118 7 3 chr1 230203822 230204118 -51989546 - AluSx SINE Alu -15 297 1 1061 248 17 24 chr1 230204164 230204459 -51989205 + L1MC/D LINE L1 5531 5823 -1985 980 90 0 8 chr1 230204461 230204594 -51989070 + AluSg SINE Alu 1 132 -178 1660 98 0 13 chr1 230204694 230204928 -51988736 + AluY SINE Alu 65 295 -16 841 305 80 34 chr1 230204973 230205497 -51988167 + L2 LINE L2 2429 2976 -338 1073 129 0 2 chr1 230205513 230205734 -51987930 - THE1C LTR MaLR -119 256 1 351 310 99 14 chr1 230205746 230205888 -51987776 + L2 LINE L2 3117 3270 -2 209 331 122 14 chr1 230206519 230206667 -51986997 + L3b LINE CR1 1185 1348 -235 26 0 0 0 chr1 230206795 230206821 -51986843 + AT_rich Low_complexity Low_complexity 1 26 0 899 139 0 29 chr1 230206918 230207055 -51986609 + FLAM_C SINE Alu 1 133 0 238 302 0 16 chr1 230207272 230207335 -51986329 - L3 LINE CR1 -21 1556 1495 718 83 62 0 chr1 230207356 230207452 -51986212 - U6 snRNA snRNA -5 102 1 4100 121 73 17 chr1 230207587 230208309 -51985355 - L1MA8 LINE L1 -5 6286 5524 253 368 9 0 chr1 230208309 230208415 -51985249 - L3 LINE CR1 -176 1401 1295 1776 183 3 7 chr1 230208541 230208847 -51984817 + AluJo SINE Alu 1 305 -7 508 278 122 0 chr1 230208888 230209093 -51984571 - MIR SINE MIR -21 241 12 416 296 112 0 chr1 230209141 230209320 -51984344 - L3 LINE CR1 -291 1286 1088 652 143 10 0 chr1 230209320 230209418 -51984246 - LTR47A LTR ERVL 0 452 354 1080 61 0 0 chr1 230209418 230209550 -51984114 + AluSg/x SINE Alu 168 299 -13 22 56 0 0 chr1 230209901 230209937 -51983727 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 230210202 230210223 -51983441 + AT_rich Low_complexity Low_complexity 1 21 0 234 125 0 0 chr1 230212370 230212418 -51981246 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 190 327 60 33 chr1 230215721 230215871 -51977793 + L2 LINE L2 2590 2743 -571 2163 104 21 0 chr1 230216170 230216481 -51977183 - AluSp SINE Alu 0 313 1 25 51 0 0 chr1 230217156 230217195 -51976469 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 230217930 230217971 -51975693 + AT_rich Low_complexity Low_complexity 1 41 0 270 0 0 0 chr1 230217985 230218015 -51975649 + (CA)n Simple_repeat Simple_repeat 2 31 0 213 218 36 0 chr1 230218037 230218092 -51975572 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 1963 144 0 10 chr1 230218975 230219266 -51974398 - AluJb SINE Alu -24 288 1 285 250 131 0 chr1 230220482 230220566 -51973098 - L2 LINE L2 0 3313 3219 2344 101 0 7 chr1 230220573 230220879 -51972785 - AluSg SINE Alu -6 304 1 24 67 0 0 chr1 230223976 230224021 -51969643 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr1 230225209 230225238 -51968426 + AT_rich Low_complexity Low_complexity 1 29 0 2599 50 0 7 chr1 230226351 230226654 -51967010 + AluY SINE Alu 1 301 -10 2126 124 3 3 chr1 230226702 230227001 -51966663 + AluSx SINE Alu 9 307 -5 189 0 0 0 chr1 230227651 230227672 -51965992 + (T)n Simple_repeat Simple_repeat 1 21 0 498 104 0 0 chr1 230227934 230228001 -51965663 + Alu SINE Alu 230 296 -16 392 298 9 0 chr1 230228080 230228194 -51965470 - MIR SINE MIR -116 146 32 2404 78 0 0 chr1 230229256 230229552 -51964112 + AluY SINE Alu 2 297 -14 254 289 161 53 chr1 230230095 230230510 -51963154 + L2 LINE L2 2202 2661 -653 2205 129 0 0 chr1 230230931 230231226 -51962438 + AluSx SINE Alu 3 297 -15 417 198 230 0 chr1 230232577 230232703 -51960961 - MIR SINE MIR -70 192 38 1858 165 0 26 chr1 230232771 230233080 -51960584 + AluJo SINE Alu 1 301 -11 32 0 0 0 chr1 230233140 230233172 -51960492 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr1 230233222 230233258 -51960406 + AT_rich Low_complexity Low_complexity 1 36 0 230 265 97 54 chr1 230233497 230233682 -51959982 + L1MC/D LINE L1 5364 5556 -2252 413 208 20 0 chr1 230233762 230233863 -51959801 + (TA)n Simple_repeat Simple_repeat 1 103 0 2042 106 32 0 chr1 230235503 230235786 -51957878 - AluSx SINE Alu -20 292 1 510 219 81 0 chr1 230235846 230235969 -51957695 - MER94 DNA DNA -1 133 1 189 235 20 82 chr1 230236474 230236572 -51957092 + L2 LINE L2 2997 3088 -225 229 212 94 24 chr1 230236891 230236976 -51956688 + LTR5 LTR ERVK 421 511 -458 26 0 0 0 chr1 230238213 230238239 -51955425 + GC_rich Low_complexity Low_complexity 1 26 0 2194 115 0 13 chr1 230241361 230241673 -51951991 - AluSc SINE Alu 0 309 2 548 243 20 7 chr1 230242044 230242196 -51951468 + L2 LINE L2 3158 3311 -2 559 203 0 58 chr1 230242426 230242564 -51951100 - FLAM_C SINE Alu -1 132 3 2065 108 45 7 chr1 230242574 230242860 -51950804 - AluSx SINE Alu -15 297 1 213 264 14 14 chr1 230242925 230242997 -51950667 + MIR SINE MIR 75 146 -62 2283 103 0 0 chr1 230243866 230244148 -51949516 - AluSx SINE Alu -20 292 11 2073 105 0 10 chr1 230244249 230244544 -51949120 + AluSq SINE Alu 22 313 0 448 243 39 77 chr1 230244669 230244850 -51948814 - MIR SINE MIR -1 261 88 227 300 43 0 chr1 230244869 230244939 -51948725 - MIR SINE MIR -108 154 82 1839 146 9 29 chr1 230245629 230245944 -51947720 - AluJo SINE Alu -3 309 1 358 320 63 6 chr1 230246138 230246313 -51947351 - L1ME4a LINE L1 -254 5867 5683 2505 76 0 7 chr1 230246511 230246815 -51946849 + AluY SINE Alu 1 302 -9 440 300 99 17 chr1 230246855 230247088 -51946576 + MIR SINE MIR 11 262 0 1686 118 4 11 chr1 230247146 230247408 -51946256 - AluSx SINE Alu -17 295 36 2405 101 0 0 chr1 230247567 230247910 -51945754 + AluSg SINE Alu 1 343 0 195 283 17 0 chr1 230248283 230248343 -51945321 + L3 LINE CR1 1505 1565 -12 23 33 0 0 chr1 230248401 230248431 -51945233 + AT_rich Low_complexity Low_complexity 1 30 0 377 279 67 31 chr1 230248922 230249503 -51944161 + L1MC5 LINE L1 7149 7576 -385 1798 154 13 20 chr1 230249509 230249808 -51943856 - AluJb SINE Alu -13 299 3 471 217 47 23 chr1 230250572 230250701 -51942963 - MIR SINE MIR -14 248 117 267 54 0 0 chr1 230250812 230250849 -51942815 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1356 121 221 4 chr1 230250851 230251082 -51942582 - AluJb SINE Alu -31 281 1 1687 143 74 12 chr1 230251149 230251602 -51942062 + LTR54 LTR ERV1 1 496 -2 890 31 0 0 chr1 230251838 230251935 -51941729 + AluSc SINE Alu 197 293 -16 248 346 0 12 chr1 230252399 230252480 -51941184 + GA-rich Low_complexity Low_complexity 4 83 0 1535 169 74 114 chr1 230253672 230253770 -51939894 + MLT2D LTR ERVL 1 101 -313 189 0 0 0 chr1 230253770 230253791 -51939873 + (TG)n Simple_repeat Simple_repeat 2 22 0 1535 169 74 114 chr1 230253791 230254123 -51939541 + MLT2D LTR ERVL 101 414 0 368 289 235 0 chr1 230254186 230254335 -51939329 - MER91A DNA MER1_type -4 192 9 1895 137 3 17 chr1 230254376 230254669 -51938995 - AluSx SINE Alu -23 289 1 1726 167 3 3 chr1 230254681 230254986 -51938678 - AluJb SINE Alu -7 305 1 257 211 19 0 chr1 230255326 230255378 -51938286 + L2 LINE L2 3219 3271 -1 1319 195 121 41 chr1 230257424 230257813 -51935851 + Charlie4a DNA MER1_type 1 420 -88 262 319 86 43 chr1 230260230 230260393 -51933271 - MIR3 SINE MIR -24 184 15 1844 149 35 3 chr1 230262089 230262377 -51931287 - AluJb SINE Alu -15 297 1 722 84 0 0 chr1 230263216 230263311 -51930353 + AluY SINE Alu 4 98 -213 1059 85 0 0 chr1 230263312 230263442 -51930222 + AluSg/x SINE Alu 161 290 -22 235 208 0 26 chr1 230263572 230263649 -51930015 + GA-rich Low_complexity Low_complexity 1 75 0 204 125 0 0 chr1 230263813 230263845 -51929819 + (TG)n Simple_repeat Simple_repeat 1 32 0 2168 127 3 16 chr1 230267659 230267973 -51925691 + AluSg SINE Alu 1 310 0 2547 80 6 0 chr1 230267978 230268289 -51925375 + AluSp SINE Alu 1 313 0 2260 108 3 0 chr1 230268547 230268844 -51924820 - AluSx SINE Alu -14 298 1 1002 135 107 0 chr1 230268848 230269026 -51924638 + MER3 DNA MER1_type 13 209 0 1575 145 23 79 chr1 230269180 230269484 -51924180 - AluJo SINE Alu -8 304 18 1624 184 3 20 chr1 230269719 230270012 -51923652 + AluJo SINE Alu 1 288 -24 927 251 23 0 chr1 230270034 230270253 -51923411 - MER58A DNA MER1_type 0 224 1 720 271 41 33 chr1 230270361 230270605 -51923059 + MIR SINE MIR 14 259 -3 2488 93 0 0 chr1 230270692 230270994 -51922670 + AluSx SINE Alu 1 302 -10 2122 137 3 0 chr1 230271287 230271580 -51922084 - AluJb SINE Alu -18 294 1 436 272 61 0 chr1 230271676 230271790 -51921874 - MIR SINE MIR -67 141 21 2006 153 0 10 chr1 230271826 230272127 -51921537 + AluJb SINE Alu 1 298 -14 2673 206 45 31 chr1 230274186 230274830 -51918834 + MER82 DNA MER2_type 1 653 0 1136 139 11 27 chr1 230275026 230275213 -51918451 - AluSg/x SINE Alu -7 303 120 360 222 222 9 chr1 230275223 230275331 -51918333 - MER91A DNA MER1_type -1 195 65 858 228 19 24 chr1 230277006 230277212 -51916452 + MIR SINE MIR 7 211 -51 183 42 0 0 chr1 230277800 230277824 -51915840 + (CTG)n Simple_repeat Simple_repeat 1 24 0 2283 102 7 0 chr1 230278846 230279140 -51914524 - AluSx SINE Alu -16 296 1 188 0 74 0 chr1 230280142 230280169 -51913495 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 369 0 0 0 chr1 230280171 230280212 -51913452 + (TG)n Simple_repeat Simple_repeat 1 41 0 558 0 0 0 chr1 230282208 230282270 -51911394 + (TC)n Simple_repeat Simple_repeat 2 63 0 288 0 0 0 chr1 230282269 230282301 -51911363 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 1853 161 14 7 chr1 230282304 230282596 -51911068 - AluJo SINE Alu -16 296 3 2252 223 91 40 chr1 230282606 230283412 -51910252 + L2 LINE L2 2204 3056 -257 419 268 76 19 chr1 230283603 230283760 -51909904 - MIR SINE MIR -12 250 85 462 234 80 69 chr1 230283763 230283938 -51909726 - MIR SINE MIR -57 205 29 2369 100 3 25 chr1 230284364 230284683 -51908981 - AluSx SINE Alu 0 312 1 875 126 0 22 chr1 230286610 230286745 -51906919 - FRAM SINE Alu -2 174 43 201 237 0 0 chr1 230287297 230287335 -51906329 - MER5A DNA MER1_type -4 185 148 535 328 52 0 chr1 230287604 230287833 -51905831 - MARNA DNA Mariner -163 423 183 2450 68 0 7 chr1 230287836 230288129 -51905535 + AluSq SINE Alu 1 291 -22 25 51 0 0 chr1 230288483 230288522 -51905142 + AT_rich Low_complexity Low_complexity 1 39 0 287 248 50 28 chr1 230288724 230288741 -51904923 - L1MA10 LINE L1 0 6334 6318 1133 194 35 0 chr1 230288741 230288973 -51904691 - L1ME1 LINE L1 -8 6158 5919 1680 177 7 17 chr1 230288973 230289261 -51904403 + AluJb SINE Alu 6 290 -22 282 182 0 0 chr1 230289305 230289360 -51904304 + Alu SINE Alu 246 300 -2 1991 127 50 10 chr1 230289379 230289679 -51903985 + AluJb SINE Alu 1 312 0 2444 208 55 63 chr1 230289689 230290032 -51903632 - L1ME1 LINE L1 -242 5924 5580 2316 90 3 0 chr1 230290032 230290320 -51903344 + AluSp SINE Alu 7 295 -18 2444 208 55 63 chr1 230290320 230290625 -51903039 - L1ME1 LINE L1 -586 5580 5274 1435 169 35 42 chr1 230290625 230290842 -51902822 - AluJo SINE Alu 0 343 127 2224 133 0 0 chr1 230290842 230291144 -51902520 + AluSx SINE Alu 1 302 -10 1435 169 35 42 chr1 230291144 230291271 -51902393 - AluJo SINE Alu -216 127 1 2444 208 55 63 chr1 230291271 230291368 -51902296 - L1ME1 LINE L1 -892 5274 5178 2117 123 3 56 chr1 230291368 230291692 -51901972 - AluSx SINE Alu -5 307 1 2444 208 55 63 chr1 230291692 230291950 -51901714 - L1ME1 LINE L1 -988 5178 4927 1251 130 0 0 chr1 230292414 230292583 -51901081 - AluY SINE Alu -20 291 123 2164 117 17 3 chr1 230294658 230294949 -51898715 - AluSx SINE Alu -17 295 1 2459 70 0 13 chr1 230295204 230295503 -51898161 + AluY SINE Alu 1 295 -16 858 317 76 30 chr1 230295548 230296072 -51897592 + L2 LINE L2 2429 2976 -338 1042 114 0 2 chr1 230296088 230296309 -51897355 - THE1C LTR MaLR -119 256 1 320 257 81 29 chr1 230296327 230296463 -51897201 + L2 LINE L2 3169 3311 -2 217 351 115 7 chr1 230297094 230297242 -51896422 + L3b LINE CR1 1185 1348 -235 26 0 0 0 chr1 230297370 230297396 -51896268 + AT_rich Low_complexity Low_complexity 1 26 0 861 139 0 29 chr1 230297493 230297630 -51896034 + FLAM_C SINE Alu 1 133 0 235 302 0 16 chr1 230297847 230297910 -51895754 - L3 LINE CR1 -21 1556 1495 681 83 62 0 chr1 230297931 230298027 -51895637 - U6 snRNA snRNA -5 102 1 329 339 27 77 chr1 230298036 230298163 -51895501 - L3 LINE CR1 -73 1504 1391 3809 122 72 20 chr1 230298163 230298898 -51894766 - L1MA8 LINE L1 -5 6286 5514 329 339 27 77 chr1 230298898 230298991 -51894673 - L3 LINE CR1 -186 1391 1295 1830 183 3 7 chr1 230299117 230299423 -51894241 + AluJo SINE Alu 1 305 -7 560 299 112 0 chr1 230299445 230299669 -51893995 - MIR SINE MIR -2 260 12 452 296 112 0 chr1 230299717 230299896 -51893768 - L3 LINE CR1 -291 1286 1088 623 143 10 0 chr1 230299896 230299994 -51893670 - LTR47A LTR ERVL 0 452 354 937 102 0 0 chr1 230299994 230300121 -51893543 + AluSg/x SINE Alu 166 292 -18 2129 126 17 0 chr1 230300121 230300423 -51893241 + AluSx SINE Alu 1 307 -5 335 218 0 13 chr1 230300427 230300505 -51893159 - LTR47A LTR ERVL -137 315 239 599 177 18 0 chr1 230300505 230300618 -51893046 + FRAM SINE Alu 1 114 -62 582 145 174 22 chr1 230300716 230300790 -51892874 - LTR47A LTR ERVL -256 196 135 2372 98 0 0 chr1 230300790 230301086 -51892578 + AluSc SINE Alu 3 298 -11 582 145 174 22 chr1 230301086 230301149 -51892515 - LTR47A LTR ERVL -317 135 38 218 217 0 0 chr1 230301152 230301198 -51892466 + A-rich Low_complexity Low_complexity 1 46 0 1908 134 23 20 chr1 230301210 230301516 -51892148 + AluSx SINE Alu 1 307 -5 321 143 0 0 chr1 230301516 230301565 -51892099 - LTR47A LTR ERVL -403 49 1 279 305 9 29 chr1 230301567 230301672 -51891992 - L3 LINE CR1 -487 1090 988 2261 101 0 7 chr1 230301989 230302285 -51891379 + AluSq SINE Alu 9 302 -11 2222 103 0 0 chr1 230302290 230302571 -51891093 + AluSx SINE Alu 1 281 -31 2029 194 87 30 chr1 230302601 230303162 -51890502 - L1MC/D LINE L1 -743 5797 5270 1963 143 10 3 chr1 230303162 230303469 -51890195 + AluSx SINE Alu 1 309 -3 2029 194 87 30 chr1 230303469 230303622 -51890042 - L1MC/D LINE L1 -1270 5270 5092 1710 172 23 13 chr1 230303622 230303924 -51889740 - AluJo SINE Alu -7 305 1 2029 194 87 30 chr1 230303924 230303977 -51889687 - L1MC/D LINE L1 -1448 5092 5043 1004 160 0 0 chr1 230303977 230304121 -51889543 - AluSg/x SINE Alu -18 292 149 3587 215 38 77 chr1 230304144 230304191 -51889473 - L1MC/D LINE L1 -1447 5093 5046 2188 137 0 0 chr1 230304191 230304484 -51889180 - AluSg SINE Alu -17 293 1 3587 215 38 77 chr1 230304484 230305567 -51888097 - L1MC/D LINE L1 -1494 5046 4019 2106 139 3 3 chr1 230305567 230305877 -51887787 - AluSg SINE Alu 0 310 1 3587 215 38 77 chr1 230305877 230306053 -51887611 - L1MC/D LINE L1 -2521 4019 3838 3373 237 40 16 chr1 230306051 230306472 -51887192 - L1MEc LINE L1 -3045 3495 3086 * 2045 149 3 0 chr1 230306472 230306774 -51886890 + AluSx SINE Alu 1 303 -9 3373 237 40 16 chr1 230306774 230307512 -51886152 - L1MEc LINE L1 -3454 3086 2342 2147 102 37 7 chr1 230307588 230307883 -51885781 - AluSx SINE Alu -8 304 1 565 260 31 13 chr1 230307883 230308110 -51885554 - L1MEc LINE L1 -4380 2160 1930 2245 99 0 46 chr1 230308113 230308437 -51885227 - AluSq SINE Alu -4 309 1 427 151 0 0 chr1 230308437 230308510 -51885154 + MSTD LTR MaLR 324 396 0 363 165 129 24 chr1 230308510 230308595 -51885069 + MLT1D LTR MaLR 76 169 -336 963 234 60 75 chr1 230308595 230309048 -51884616 - L1MEc LINE L1 -4853 1687 1241 1642 202 3 3 chr1 230309048 230309360 -51884304 - AluJo SINE Alu 0 312 1 963 234 60 75 chr1 230309360 230309424 -51884240 - L1MEc LINE L1 -5299 1241 1178 1735 159 7 7 chr1 230309430 230309725 -51883939 - AluJo SINE Alu -17 295 1 183 100 0 0 chr1 230309951 230309981 -51883683 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 370 276 55 55 chr1 230310012 230310175 -51883489 - L1MEc LINE L1 -6210 330 168 225 256 22 11 chr1 230310167 230310257 -51883407 - L1ME LINE L1 -5954 116 26 * 1883 119 25 0 chr1 230310447 230310725 -51882939 - AluSx SINE Alu -27 285 1 647 181 75 0 chr1 230310727 230310860 -51882804 + L1MA6 LINE L1 6035 6177 -123 369 310 74 69 chr1 230310970 230311186 -51882478 - L1M4 LINE L1 -3279 3103 2887 817 150 0 27 chr1 230311207 230311354 -51882310 - FLAM_C SINE Alu 0 143 1 258 229 57 16 chr1 230311366 230311488 -51882176 - L1ME LINE L1 -345 5817 5691 330 322 97 13 chr1 230311641 230311868 -51881796 - HAL1 LINE L1 -893 1850 1477 652 183 0 0 chr1 230313620 230313740 -51879924 - FLAM_A SINE Alu -6 136 17 396 339 82 0 chr1 230313835 230314006 -51879658 + MIR3 SINE MIR 17 201 -7 828 256 168 42 chr1 230314771 230314985 -51878679 - L1ME4a LINE L1 -37 6084 5898 1638 159 3 44 chr1 230314985 230315306 -51878358 - AluJo SINE Alu -4 308 1 828 256 168 42 chr1 230315306 230315591 -51878073 - L1ME4a LINE L1 -223 5898 5522 370 268 57 8 chr1 230315961 230316084 -51877580 - MER5A DNA MER1_type 0 189 61 1779 102 12 0 chr1 230316096 230316341 -51877323 - AluSx SINE Alu -15 297 50 2244 119 0 0 chr1 230316367 230316677 -51876987 - AluSx SINE Alu 0 312 3 456 222 10 138 chr1 230316817 230317020 -51876644 + MER5B DNA MER1_type 1 177 -1 266 282 37 37 chr1 230317461 230317587 -51876077 - MIR SINE MIR -61 147 63 22 56 0 0 chr1 230317728 230317764 -51875900 + AT_rich Low_complexity Low_complexity 1 36 0 2237 104 7 3 chr1 230317855 230318164 -51875500 - AluSq SINE Alu -3 310 1 1661 122 8 0 chr1 230318166 230318412 -51875252 - AluSq SINE Alu -10 303 56 496 308 29 33 chr1 230318577 230318717 -51874947 - L1ME LINE L1 -651 5591 5452 1662 86 36 0 chr1 230318717 230318939 -51874725 + MER30 DNA MER1_type 1 230 0 496 308 29 33 chr1 230318939 230319121 -51874543 - L1ME LINE L1 -790 5452 5275 583 281 36 24 chr1 230319324 230319491 -51874173 + MER5B DNA MER1_type 1 169 -9 2354 90 3 0 chr1 230319594 230319905 -51873759 - AluSp SINE Alu -1 312 1 739 178 0 16 chr1 230320114 230320243 -51873421 - FLAM_A SINE Alu -8 134 8 2322 86 3 10 chr1 230320533 230320847 -51872817 - AluSq SINE Alu -1 312 1 2147 92 7 3 chr1 230321351 230321645 -51872019 + AluSx SINE Alu 1 295 -17 2079 114 0 10 chr1 230321654 230321951 -51871713 + AluSx SINE Alu 1 294 -18 1694 140 60 0 chr1 230323106 230323221 -51870443 + AluJb SINE Alu 1 108 -204 239 0 32 0 chr1 230323221 230323252 -51870412 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1694 140 60 0 chr1 230323252 230323421 -51870243 + AluJb SINE Alu 108 302 -10 1803 24 0 0 chr1 230324019 230324225 -51869439 - L1PA4 LINE L1 0 6155 5950 409 333 134 6 chr1 230325438 230325609 -51868055 - L2 LINE L2 -86 3186 2994 196 284 0 75 chr1 230325696 230325763 -51867901 - MIR SINE MIR -43 219 158 516 236 85 0 chr1 230325959 230326124 -51867540 - MER20B DNA MER1_type -31 752 574 675 227 63 132 chr1 230326152 230326199 -51867465 - MER20B DNA MER1_type -181 602 553 1939 92 0 78 chr1 230326199 230326528 -51867136 - AluSx SINE Alu 0 305 1 675 227 63 132 chr1 230326528 230326920 -51866744 - MER20B DNA MER1_type -230 553 192 292 244 58 103 chr1 230327041 230327066 -51866598 - Charlie8 DNA MER1_type -184 157 132 2118 117 3 0 chr1 230327066 230327373 -51866291 + AluSx SINE Alu 2 309 -3 292 244 58 103 chr1 230327373 230327503 -51866161 - Charlie8 DNA MER1_type -209 132 9 412 358 98 23 chr1 230327800 230328280 -51865384 - L2 LINE L2 -810 2504 1989 240 35 0 0 chr1 230328388 230328417 -51865247 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 897 120 0 0 chr1 230328418 230328543 -51865121 - FLAM_C SINE Alu -18 125 1 1779 116 7 31 chr1 230328880 230329256 -51864408 - AluSx SINE Alu 0 369 1 913 186 26 0 chr1 230329266 230329460 -51864204 - L1PA16 LINE L1 -20 6146 5948 321 317 89 0 chr1 230331749 230331872 -51861792 - LTR67 LTR ERVL -19 538 405 230 284 69 52 chr1 230332162 230332278 -51861386 + MIR3 SINE MIR 50 167 -41 835 134 0 30 chr1 230333473 230333607 -51860057 + FLAM_C SINE Alu 6 135 -8 422 291 168 6 chr1 230333773 230333952 -51859712 + MIR SINE MIR 46 253 -9 23 33 0 0 chr1 230337679 230337709 -51855955 + AT_rich Low_complexity Low_complexity 1 30 0 214 268 0 42 chr1 230338860 230338931 -51854733 + GA-rich Low_complexity Low_complexity 2 69 0 252 250 0 31 chr1 230339031 230339095 -51854569 + G-rich Low_complexity Low_complexity 2 63 0 213 217 43 0 chr1 230339338 230339384 -51854280 + L2 LINE L2 3246 3293 -20 2128 108 0 3 chr1 230340921 230341218 -51852446 - AluSx SINE Alu -16 296 1 303 310 38 33 chr1 230341323 230341507 -51852157 - L1ME LINE L1 -303 5818 5634 197 167 0 48 chr1 230342285 230342327 -51851337 + L2 LINE L2 3016 3055 -217 271 200 67 0 chr1 230342483 230342543 -51851121 + MIR SINE MIR 88 151 -57 2263 87 7 0 chr1 230342562 230342862 -51850802 - AluSp SINE Alu -11 302 1 2232 101 3 0 chr1 230342870 230343177 -51850487 - AluSp SINE Alu -5 308 1 1809 159 25 19 chr1 230343191 230343505 -51850159 - L1MC1 LINE L1 0 6333 6018 1790 163 10 19 chr1 230343505 230343818 -51849846 - AluJo SINE Alu -2 310 1 1596 186 20 10 chr1 230345084 230345380 -51848284 - AluJb SINE Alu -13 299 1 270 249 201 25 chr1 230348964 230349134 -51844530 + MIR3 SINE MIR 13 208 -54 346 175 0 0 chr1 230349971 230350034 -51843630 - MER82 DNA MER2_type -3 650 588 1766 189 0 0 chr1 230350034 230350330 -51843334 + AluJb SINE Alu 1 296 -16 182 114 0 29 chr1 230350551 230350586 -51843078 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 879 160 0 7 chr1 230351118 230351262 -51842402 - AluSx SINE Alu -150 162 20 2073 145 0 0 chr1 230351482 230351792 -51841872 - AluSx SINE Alu -2 310 1 1410 156 12 28 chr1 230352428 230352678 -51840986 - AluJo SINE Alu -66 246 1 243 162 0 0 chr1 230354273 230354310 -51839354 + MLT1B LTR MaLR 1 37 -353 693 108 200 0 chr1 230354311 230354441 -51839223 + MLT1B LTR MaLR 233 388 -2 316 396 18 0 chr1 230354800 230354964 -51838700 - MIR SINE MIR -6 256 90 408 241 36 0 chr1 230357158 230357270 -51836394 + MIR3 SINE MIR 74 189 -19 318 275 100 0 chr1 230358023 230358180 -51835484 - MIR SINE MIR -67 141 11 345 233 23 0 chr1 230358455 230358541 -51835123 + MIR3 SINE MIR 86 173 -35 1914 150 0 25 chr1 230358594 230358914 -51834750 + AluJo SINE Alu 1 312 0 560 309 114 0 chr1 230360735 230360945 -51832719 + MIR SINE MIR 29 262 0 593 194 48 0 chr1 230361616 230361740 -51831924 + MIR3 SINE MIR 66 195 -13 1270 268 172 21 chr1 230361951 230362597 -51831067 + L2 LINE L2 2298 2845 -468 2053 92 4 0 chr1 230362597 230362869 -51830795 + AluSg SINE Alu 1 273 -37 1270 268 172 21 chr1 230362869 230362886 -51830778 + L2 LINE L2 2845 2858 -455 189 0 0 0 chr1 230362886 230362907 -51830757 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1270 268 172 21 chr1 230362907 230363123 -51830541 + L2 LINE L2 2858 3313 0 361 362 23 29 chr1 230364161 230364335 -51829329 + MIR SINE MIR 90 262 0 2422 66 3 0 chr1 230365965 230366267 -51827397 + AluSp SINE Alu 7 309 -4 395 279 45 18 chr1 230366359 230366518 -51827146 + L1MC4a LINE L1 5669 5690 -473 1729 148 46 11 chr1 230366518 230366802 -51826862 - AluJb SINE Alu -6 306 13 395 279 45 18 chr1 230366802 230366880 -51826784 + L1MC4a LINE L1 5690 5764 -399 249 249 103 97 chr1 230367805 230367990 -51825674 - MER102a DNA MER1_type -30 300 115 288 366 34 11 chr1 230368137 230368312 -51825352 + L2 LINE L2 2916 3094 -178 209 409 27 0 chr1 230368491 230368601 -51825063 + L2 LINE L2 3199 3311 -2 182 336 156 0 chr1 230369196 230369324 -51824340 - MIR SINE MIR -35 227 80 184 206 0 0 chr1 230370900 230370934 -51822730 - MIR SINE MIR -112 150 117 804 167 1 0 chr1 230371903 230373028 -51820636 + (CA)n Simple_repeat Simple_repeat 1 1126 0 384 205 161 9 chr1 230373545 230373657 -51820007 - MIR SINE MIR -79 183 55 * 525 292 35 0 chr1 230373643 230373787 -51819877 - L3 LINE CR1 -3 1574 1426 652 304 48 13 chr1 230374825 230375052 -51818612 - MIR SINE MIR -10 252 18 614 283 104 13 chr1 230376407 230376637 -51817027 - MIR SINE MIR -11 251 1 274 324 58 7 chr1 230376750 230376889 -51816775 + MIR3 SINE MIR 41 186 -22 253 374 147 5 chr1 230377520 230377718 -51815946 - MIR SINE MIR 0 262 37 225 0 0 0 chr1 230377765 230377790 -51815874 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1695 176 11 3 chr1 230377790 230378074 -51815590 - AluJb SINE Alu -26 286 1 204 274 71 12 chr1 230378326 230378410 -51815254 + MIR SINE MIR 30 118 -90 890 129 0 0 chr1 230378667 230378791 -51814873 - FLAM_C SINE Alu -19 124 1 420 149 107 8 chr1 230378835 230378956 -51814708 - MER96B DNA MER1_type? 0 417 285 226 192 192 0 chr1 230378948 230379000 -51814664 + MER58A DNA MER1_type 7 68 -39 * 329 314 69 34 chr1 230380122 230380297 -51813367 - MIR SINE MIR -7 255 75 355 344 38 19 chr1 230380878 230381038 -51812626 + L3b LINE CR1 1288 1450 -133 346 295 158 21 chr1 230381113 230381317 -51812347 - MIR SINE MIR -1 261 30 213 291 220 50 chr1 230383746 230383928 -51809736 + MIR SINE MIR 20 232 -30 2066 121 0 0 chr1 230384065 230384366 -51809298 - AluSg SINE Alu 0 301 1 24 32 0 0 chr1 230384374 230384405 -51809259 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr1 230385942 230385977 -51807687 + (CA)n Simple_repeat Simple_repeat 2 36 0 181 290 160 0 chr1 230386052 230386152 -51807512 + L3 LINE CR1 1335 1450 -127 187 264 0 110 chr1 230387743 230387834 -51805830 + MER5B DNA MER1_type 41 121 -57 180 134 15 30 chr1 230388579 230388646 -51805018 + (CGG)n Simple_repeat Simple_repeat 2 67 0 29 28 0 0 chr1 230388686 230388722 -51804942 + GC_rich Low_complexity Low_complexity 1 36 0 24 96 0 0 chr1 230388851 230388924 -51804740 + GC_rich Low_complexity Low_complexity 1 73 0 288 77 0 0 chr1 230389035 230389074 -51804590 + (TGGGGG)n Simple_repeat Simple_repeat 4 42 0 419 218 69 10 chr1 230389138 230389239 -51804425 - MIR SINE MIR -61 147 41 224 290 161 16 chr1 230390452 230390576 -51803088 - MIR SINE MIR -7 255 114 183 311 94 28 chr1 230390786 230390892 -51802772 + L2 LINE L2 2989 3101 -171 188 195 13 78 chr1 230391126 230391203 -51802461 + L3b LINE CR1 1317 1388 -195 209 222 32 32 chr1 230391268 230391331 -51802333 + CT-rich Low_complexity Low_complexity 1 63 0 602 258 33 0 chr1 230392391 230392542 -51801122 - MIR3 SINE MIR -17 191 36 2154 127 0 3 chr1 230392643 230392951 -51800713 + AluSx SINE Alu 1 307 -5 677 338 17 8 chr1 230392972 230393206 -51800458 + MIR SINE MIR 6 241 -21 495 186 51 8 chr1 230393562 230393680 -51799984 - MIR SINE MIR -29 233 111 656 227 31 0 chr1 230393697 230393860 -51799804 + MLT1I LTR MaLR 6 173 -236 322 294 39 0 chr1 230393875 230393977 -51799687 + MLT1I LTR MaLR 297 402 -7 345 310 228 0 chr1 230394556 230394753 -51798911 - MIR SINE MIR 0 262 21 1665 221 19 45 chr1 230394847 230395229 -51798435 + L1ME1 LINE L1 5663 6030 -136 1906 139 10 19 chr1 230395229 230395539 -51798125 - AluJb SINE Alu -4 308 2 1665 221 19 45 chr1 230395539 230395668 -51797996 + L1ME1 LINE L1 6030 6161 -5 218 203 0 17 chr1 230397348 230397407 -51796257 + CT-rich Low_complexity Low_complexity 3 60 0 206 351 144 14 chr1 230397407 230397629 -51796035 - L2 LINE L2 -60 3253 3003 443 327 48 0 chr1 230397847 230398015 -51795649 + MIR SINE MIR 38 213 -49 987 192 0 0 chr1 230398320 230398487 -51795177 - AluJb SINE Alu -12 300 134 2127 111 3 0 chr1 230398487 230398831 -51794833 - AluSx SINE Alu 0 312 1 247 277 216 20 chr1 230399039 230399141 -51794523 + MIR SINE MIR 34 156 -52 225 361 77 13 chr1 230399514 230399669 -51793995 - MIR SINE MIR -43 219 55 706 269 48 22 chr1 230400423 230400535 -51793129 + MIR SINE MIR 6 114 -148 2016 144 0 3 chr1 230400535 230400840 -51792824 - AluSq SINE Alu -9 304 1 706 269 48 22 chr1 230400840 230400954 -51792710 + MIR SINE MIR 114 238 -24 1675 177 47 3 chr1 230400959 230401140 -51792524 - AluJo SINE Alu 0 312 111 345 24 0 0 chr1 230401140 230401182 -51792482 + (TG)n Simple_repeat Simple_repeat 1 42 0 1675 177 47 3 chr1 230401182 230401299 -51792365 - AluJo SINE Alu -201 111 1 475 342 58 52 chr1 230401663 230402011 -51791653 - L2 LINE L2 -3 3269 2920 900 363 146 18 chr1 230402047 230402996 -51790668 - L2 LINE L2 -494 2820 1993 2113 124 0 0 chr1 230402996 230403287 -51790377 + AluSx SINE Alu 9 299 -13 900 363 146 18 chr1 230403287 230403299 -51790365 - L2 LINE L2 -1321 1993 1984 323 44 22 0 chr1 230403299 230403344 -51790320 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 900 363 146 18 chr1 230403344 230403693 -51789971 - L2 LINE L2 -1330 1984 1342 331 329 73 18 chr1 230403990 230404154 -51789510 + MIR SINE MIR 56 228 -34 661 213 129 7 chr1 230407022 230407177 -51786487 - MER5B DNA MER1_type -3 175 2 1990 129 6 16 chr1 230407240 230407573 -51786091 - AluSx SINE Alu 0 312 1 521 335 11 5 chr1 230408915 230409106 -51784558 + MIR3 SINE MIR 6 197 -11 2177 106 3 0 chr1 230409651 230409943 -51783721 - AluSg SINE Alu -17 293 1 1438 179 106 91 chr1 230410245 230410588 -51783076 + L1MC4 LINE L1 7367 7722 -320 2144 118 7 3 chr1 230410588 230410894 -51782770 + AluSx SINE Alu 1 307 -5 1438 179 106 91 chr1 230410894 230411087 -51782577 + L1MC4 LINE L1 7722 7911 -131 1902 145 3 0 chr1 230411288 230411614 -51782050 - AluSx SINE Alu 0 329 3 1874 143 31 0 chr1 230411676 230411969 -51781695 - AluSx SINE Alu -10 302 1 180 281 177 0 chr1 230412853 230412949 -51780715 - L2 LINE L2 -2 3270 3158 532 350 127 8 chr1 230414545 230414914 -51778750 + L3 LINE CR1 970 1382 -195 437 299 13 32 chr1 230414911 230415065 -51778599 + MIR SINE MIR 18 168 -94 * 322 204 159 0 chr1 230415147 230415235 -51778429 - MER5A DNA MER1_type -78 111 10 335 345 148 0 chr1 230415244 230415386 -51778278 + L3 LINE CR1 1412 1574 -3 804 200 7 0 chr1 230417460 230417615 -51776049 - MER45A DNA AcHobo -22 156 1 200 289 41 41 chr1 230419286 230419383 -51774281 - L3 LINE CR1 -1269 308 212 223 292 0 42 chr1 230419702 230419774 -51773890 + GA-rich Low_complexity Low_complexity 1 69 0 579 257 28 34 chr1 230420455 230420634 -51773030 + MER5B DNA MER1_type 1 178 0 890 194 54 0 chr1 230420642 230420828 -51772836 - MER3 DNA MER1_type 0 209 14 434 70 14 0 chr1 230421171 230421242 -51772422 + (CA)n Simple_repeat Simple_repeat 2 73 0 1533 224 139 15 chr1 230422024 230422727 -51770937 + L2 LINE L2 2511 3313 0 825 118 0 31 chr1 230422821 230422948 -51770716 + AluJb SINE Alu 7 129 -183 329 343 60 60 chr1 230422950 230423497 -51770167 + L2 LINE L2 2698 3272 0 213 345 126 26 chr1 230425508 230425699 -51767965 + L2 LINE L2 3093 3302 -11 180 0 0 0 chr1 230427663 230427683 -51765981 + (GGGA)n Simple_repeat Simple_repeat 3 22 0 342 91 0 0 chr1 230428310 230428365 -51765299 - L1PA2 LINE L1 -3 6152 6098 1920 135 35 0 chr1 230428434 230428723 -51764941 - AluSx SINE Alu -12 300 2 246 314 0 19 chr1 230428791 230428896 -51764768 - MIR SINE MIR -87 121 19 267 324 56 0 chr1 230429260 230429368 -51764296 - L2 LINE L2 0 3272 3159 239 194 14 83 chr1 230429616 230429688 -51763976 + L2 LINE L2 3206 3272 0 199 277 0 0 chr1 230431709 230431756 -51761908 + L2 LINE L2 3137 3183 -89 2410 81 3 0 chr1 230433365 230433675 -51759989 - AluSx SINE Alu -1 311 1 742 178 0 16 chr1 230434005 230434134 -51759530 + FLAM_A SINE Alu 8 134 -8 2383 90 3 0 chr1 230434343 230434654 -51759010 + AluSp SINE Alu 1 312 -1 594 281 36 24 chr1 230434757 230434924 -51758740 - MER5B DNA MER1_type -9 169 1 446 308 29 33 chr1 230435127 230435309 -51758355 + L1MC/D LINE L1 5275 5452 -790 1657 86 36 0 chr1 230435309 230435531 -51758133 - MER30 DNA MER1_type 0 230 1 446 308 29 33 chr1 230435531 230435671 -51757993 + L1MC/D LINE L1 5452 5591 -651 1681 122 8 0 chr1 230435836 230436082 -51757582 + AluSq SINE Alu 56 303 -10 1870 102 8 4 chr1 230436084 230436338 -51757326 + AluSq SINE Alu 1 255 -58 1130 186 16 16 chr1 230436346 230436588 -51757076 + AluSg SINE Alu 64 305 -5 453 160 21 222 chr1 230436588 230436782 -51756882 + L1MC4 LINE L1 7757 7911 -131 1902 145 3 0 chr1 230436983 230437309 -51756355 - AluSx SINE Alu 0 329 3 1874 143 31 0 chr1 230437371 230437664 -51756000 - AluSx SINE Alu -10 302 1 180 281 177 0 chr1 230438548 230438644 -51755020 - L2 LINE L2 -2 3270 3158 532 350 127 8 chr1 230440240 230440609 -51753055 + L3 LINE CR1 970 1382 -195 437 299 13 32 chr1 230440606 230440760 -51752904 + MIR SINE MIR 18 168 -94 * 322 204 159 0 chr1 230440842 230440930 -51752734 - MER5A DNA MER1_type -78 111 10 335 345 148 0 chr1 230440939 230441081 -51752583 + L3 LINE CR1 1412 1574 -3 804 200 7 0 chr1 230443155 230443310 -51750354 - MER45A DNA AcHobo -22 156 1 200 289 41 41 chr1 230444981 230445078 -51748586 - L3 LINE CR1 -1269 308 212 223 292 0 42 chr1 230445397 230445469 -51748195 + GA-rich Low_complexity Low_complexity 1 69 0 579 257 28 34 chr1 230446150 230446329 -51747335 + MER5B DNA MER1_type 1 178 0 890 194 54 0 chr1 230446337 230446523 -51747141 - MER3 DNA MER1_type 0 209 14 434 70 14 0 chr1 230446866 230446937 -51746727 + (CA)n Simple_repeat Simple_repeat 2 73 0 1533 224 139 15 chr1 230447719 230448422 -51745242 + L2 LINE L2 2511 3313 0 825 118 0 31 chr1 230448516 230448643 -51745021 + AluJb SINE Alu 7 129 -183 329 343 60 60 chr1 230448645 230449192 -51744472 + L2 LINE L2 2698 3272 0 2073 129 0 3 chr1 230450468 230450770 -51742894 + AluSc SINE Alu 2 302 -7 398 279 12 85 chr1 230452629 230452794 -51740870 + MIR3 SINE MIR 42 194 -14 285 171 301 24 chr1 230453752 230453875 -51739789 - L2 LINE L2 0 3272 3116 228 159 0 23 chr1 230454370 230454414 -51739250 + L2 LINE L2 3270 3312 -1 396 301 85 20 chr1 230454788 230454941 -51738723 - MIR SINE MIR -66 196 34 302 297 54 9 chr1 230455971 230456082 -51737582 + MER5A DNA MER1_type 5 120 -69 2028 129 3 0 chr1 230457671 230457957 -51735707 + AluSx SINE Alu 12 298 -14 361 304 167 27 chr1 230458528 230458785 -51734879 - L2 LINE L2 -31 3241 2949 328 352 35 21 chr1 230459198 230459343 -51734321 + L2 LINE L2 3107 3253 -19 183 156 0 0 chr1 230459473 230459505 -51734159 + T-rich Low_complexity Low_complexity 1 32 0 1442 160 102 4 chr1 230460116 230460372 -51733292 - AluJb SINE Alu -30 282 2 207 0 0 0 chr1 230460391 230460414 -51733250 + (A)n Simple_repeat Simple_repeat 1 23 0 1142 317 102 39 chr1 230460538 230460715 -51732949 + L2 LINE L2 1493 1657 -1657 2320 87 0 0 chr1 230460715 230461015 -51732649 + AluSc SINE Alu 1 300 -9 1142 317 102 39 chr1 230461015 230461400 -51732264 + L2 LINE L2 1657 2016 -1298 3101 151 12 30 chr1 230461400 230461904 -51731760 + LTR42 LTR ERVL 1 495 0 1142 317 102 39 chr1 230461904 230462264 -51731400 + L2 LINE L2 2016 2474 -840 920 295 93 70 chr1 230462447 230463294 -51730370 - L1MEd LINE L1 -5245 874 8 230 370 34 8 chr1 230463388 230463507 -51730157 + L2 LINE L2 2683 2804 -510 1418 343 46 60 chr1 230463507 230463896 -51729768 + MSTB LTR MaLR 1 385 -41 2437 67 0 0 chr1 230463896 230464193 -51729471 - AluSc SINE Alu -12 297 1 1418 343 46 60 chr1 230464193 230464235 -51729429 + MSTB LTR MaLR 385 426 0 275 268 38 70 chr1 230464488 230464645 -51729019 + L2 LINE L2 3159 3310 -3 208 330 92 18 chr1 230465357 230465466 -51728198 + MIR SINE MIR 126 242 -20 591 176 28 0 chr1 230465654 230465762 -51727902 - FLAM_A SINE Alu -7 135 25 255 272 276 0 chr1 230465765 230465989 -51727675 + L1MC/D LINE L1 5609 5883 -309 343 230 11 11 chr1 230466038 230466125 -51727539 - L2 LINE L2 0 3313 3227 1714 174 109 18 chr1 230468102 230468223 -51725441 - Charlie4a DNA MER1_type -1454 507 398 1894 173 74 0 chr1 230468223 230468547 -51725117 - MER7A DNA MER2_type 0 346 1 1714 174 109 18 chr1 230468547 230468873 -51724791 - Charlie4a DNA MER1_type -1563 398 19 1122 244 4 0 chr1 230469007 230469253 -51724411 - MIR SINE MIR 0 262 16 218 236 18 18 chr1 230469546 230469656 -51724008 + CT-rich Low_complexity Low_complexity 2 111 0 262 268 50 89 chr1 230470155 230470334 -51723330 + MIR SINE MIR 84 255 -7 523 239 29 14 chr1 230470405 230470543 -51723121 + MIR SINE MIR 11 150 -112 309 229 276 9 chr1 230470620 230470725 -51722939 - MIR SINE MIR -10 252 120 2167 185 4 32 chr1 230472505 230473002 -51720662 + Charlie1b DNA MER1_type 41 523 0 225 368 53 7 chr1 230474088 230474240 -51719424 + MER117 DNA MER1_type 2 160 -37 879 229 159 13 chr1 230474726 230474953 -51718711 + MIR SINE MIR 3 262 0 1715 168 111 0 chr1 230474975 230475326 -51718338 + MLT1B LTR MaLR 1 390 0 696 266 68 75 chr1 230475927 230476326 -51717338 + L2 LINE L2 2857 3252 -61 239 258 0 65 chr1 230476942 230476978 -51716686 - L1MC4 LINE L1 -1308 6734 6697 198 0 0 0 chr1 230476978 230477000 -51716664 + (TG)n Simple_repeat Simple_repeat 2 23 0 239 258 0 65 chr1 230477000 230477056 -51716608 - L1MC4 LINE L1 -1345 6697 6648 532 291 77 5 chr1 230478001 230478212 -51715452 + MIR SINE MIR 34 262 0 300 347 183 4 chr1 230478352 230478899 -51714765 + L2 LINE L2 2328 2972 -342 906 262 99 0 chr1 230479299 230479612 -51714052 + L2 LINE L2 2927 3270 -43 351 302 43 0 chr1 230479650 230479766 -51713898 + MER5C DNA MER1_type 1 121 -203 287 276 13 0 chr1 230479899 230479975 -51713689 + MER5C DNA MER1_type 248 324 0 259 188 0 0 chr1 230479993 230480041 -51713623 + L2 LINE L2 3224 3271 -1 329 262 84 9 chr1 230482173 230482280 -51711384 - MIR SINE MIR 0 262 148 713 228 62 0 chr1 230484043 230484205 -51709459 - MIR SINE MIR -84 178 7 1435 94 10 5 chr1 230484376 230484577 -51709087 - AluSc SINE Alu -107 202 1 2224 60 0 11 chr1 230485552 230485865 -51707799 - AluY SINE Alu 0 310 1 245 50 0 50 chr1 230486886 230486926 -51706738 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 252 281 169 11 chr1 230489035 230489124 -51704540 + MIR SINE MIR 25 127 -81 405 0 0 0 chr1 230489198 230489243 -51704421 + (CA)n Simple_repeat Simple_repeat 2 46 0 569 172 186 0 chr1 230489246 230489391 -51704273 + MER112 DNA MER1_type 88 259 -1 230 239 42 14 chr1 230489416 230489487 -51704177 + MIR SINE MIR 184 256 -6 264 223 0 75 chr1 230493711 230493805 -51699859 - L3 LINE CR1 -312 1265 1179 194 343 0 0 chr1 230494572 230494639 -51699025 + L2 LINE L2 3205 3271 -1 254 293 35 9 chr1 230495191 230495307 -51698357 + MER117 DNA MER1_type 1 119 -78 364 197 42 134 chr1 230498172 230498314 -51695350 - MER103 DNA DNA -17 149 21 627 96 0 0 chr1 230498442 230498525 -51695139 + AluJ/FLAM SINE Alu 12 94 -218 537 275 60 5 chr1 230498691 230498891 -51694773 - MIR SINE MIR -50 212 2 241 358 113 31 chr1 230499311 230499727 -51693937 + L2 LINE L2 2255 2704 -610 776 215 37 0 chr1 230499837 230500000 -51693664 - MER45C DNA AcHobo -7 946 778 870 312 4 32 chr1 230500039 230500318 -51693346 - MER45C DNA AcHobo -284 669 399 1151 259 25 0 chr1 230500358 230500632 -51693032 - MER45C DNA AcHobo -672 281 1 444 324 114 25 chr1 230500639 230500920 -51692744 + L2 LINE L2 3006 3311 -2 1755 162 14 3 chr1 230501451 230501747 -51691917 - AluJb SINE Alu -12 300 2 643 278 28 48 chr1 230502298 230502311 -51691353 + MIR SINE MIR 20 32 -230 1982 125 14 0 chr1 230502311 230502607 -51691057 + AluSx SINE Alu 1 300 -12 643 278 28 48 chr1 230502607 230502841 -51690823 + MIR SINE MIR 32 262 0 411 270 31 86 chr1 230502822 230502985 -51690679 + MIR3 SINE MIR 49 202 -6 * 407 291 106 0 chr1 230503159 230503300 -51690364 + MIR SINE MIR 101 256 -6 192 77 0 0 chr1 230505252 230505278 -51688386 + (TCC)n Simple_repeat Simple_repeat 2 27 0 1801 149 0 33 chr1 230506461 230506763 -51686901 + AluJb SINE Alu 1 292 -20 1728 131 11 7 chr1 230506783 230507065 -51686599 + AluSx SINE Alu 25 307 -5 26 101 0 0 chr1 230508098 230508187 -51685477 + GC_rich Low_complexity Low_complexity 1 89 0 265 281 37 0 chr1 230509760 230509842 -51683822 + L2 LINE L2 3223 3307 -6 2143 128 7 0 chr1 230510419 230510711 -51682953 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr1 230511231 230511252 -51682412 + AT_rich Low_complexity Low_complexity 1 21 0 1995 139 0 16 chr1 230511463 230511773 -51681891 + AluJb SINE Alu 1 305 -7 396 288 92 7 chr1 230512684 230512837 -51680827 - MIR SINE MIR -17 245 80 652 246 126 5 chr1 230513060 230513275 -51680389 + MIR SINE MIR 22 262 0 680 236 86 6 chr1 230513696 230513870 -51679794 - MIR SINE MIR -21 241 54 189 326 22 34 chr1 230514010 230514099 -51679565 + MIR3 SINE MIR 15 102 -106 647 244 113 33 chr1 230515315 230515528 -51678136 + MIR SINE MIR 18 247 -15 274 279 98 25 chr1 230515911 230516033 -51677631 + L2 LINE L2 3165 3295 -18 310 251 95 78 chr1 230516332 230516410 -51677254 - MIR SINE MIR -13 249 174 1158 201 141 19 chr1 230516410 230516673 -51676991 - AluJo SINE Alu -7 295 1 310 251 95 78 chr1 230516673 230516773 -51676891 - MIR SINE MIR -88 174 68 686 309 87 0 chr1 230516781 230517011 -51676653 - MIR SINE MIR 0 262 13 293 290 9 0 chr1 230518134 230518241 -51675423 - MIR3 SINE MIR -20 188 81 185 288 17 0 chr1 230518322 230518381 -51675283 + MIR3 SINE MIR 15 74 -134 562 283 120 13 chr1 230518532 230518765 -51674899 - MIR SINE MIR -4 258 1 299 271 83 0 chr1 230519278 230519374 -51674290 - MIR SINE MIR -76 132 29 721 285 64 4 chr1 230519703 230519938 -51673726 - MIR SINE MIR 0 262 14 251 276 191 19 chr1 230520044 230520149 -51673515 - MIR SINE MIR -69 139 17 357 286 272 31 chr1 230520485 230520838 -51672826 - L2 LINE L2 -473 2841 2404 2247 105 3 0 chr1 230520853 230521138 -51672526 + AluSx SINE Alu 3 288 -24 323 262 141 39 chr1 230521145 230521351 -51672313 - L1MCa LINE L1 -4258 2168 1942 22 0 0 0 chr1 230521356 230521378 -51672286 + AT_rich Low_complexity Low_complexity 1 22 0 229 141 59 0 chr1 230521378 230521463 -51672201 + (TA)n Simple_repeat Simple_repeat 1 90 0 270 328 100 22 chr1 230521698 230521969 -51671695 - L2 LINE L2 -1219 2095 1804 197 294 118 12 chr1 230523076 230523161 -51670503 - MIR3 SINE MIR -112 96 3 189 288 68 0 chr1 230523788 230523847 -51669817 + L3b LINE CR1 1210 1272 -311 1725 190 3 3 chr1 230523922 230524227 -51669437 + AluJb SINE Alu 1 305 -7 196 349 15 0 chr1 230524616 230524682 -51668982 + L2 LINE L2 3205 3271 -1 572 330 109 50 chr1 230525343 230526126 -51667538 + L2 LINE L2 2113 2941 -373 303 287 89 32 chr1 230526173 230526330 -51667334 + L2 LINE L2 3086 3251 -21 205 252 244 38 chr1 230526395 230526526 -51667138 - MIR3 SINE MIR -40 168 11 367 207 241 9 chr1 230526731 230526847 -51666817 + MIR3 SINE MIR 47 189 -19 539 302 43 71 chr1 230528613 230528868 -51664796 - MIR SINE MIR 0 262 15 599 319 108 50 chr1 230529110 230529546 -51664118 - L3 LINE CR1 -54 1523 1063 241 364 0 36 chr1 230529547 230529657 -51664007 + MIR SINE MIR 107 212 -50 234 0 0 0 chr1 230530402 230530428 -51663236 + (TG)n Simple_repeat Simple_repeat 2 27 0 249 193 102 23 chr1 230530943 230531031 -51662633 + MER46A DNA MER2_type 8 102 -134 * 4601 117 57 5 chr1 230531002 230531799 -51661865 + MER46A DNA MER2_type 1869 211 -25 602 244 50 61 chr1 230533387 230533567 -51660097 + MIR3 SINE MIR 23 200 -8 283 321 0 12 chr1 230533734 230533818 -51659846 + L2 LINE L2 3186 3268 -4 534 233 15 147 chr1 230533882 230534148 -51659516 + MIR SINE MIR 20 250 -12 191 313 30 97 chr1 230535017 230535151 -51658513 - L2 LINE L2 -5 3267 3143 1669 229 47 81 chr1 230535199 230535832 -51657832 - LTR9 LTR ERV1 0 612 1 500 305 33 56 chr1 230535863 230536076 -51657588 - L2 LINE L2 -46 3226 3019 2156 179 48 36 chr1 230536106 230536603 -51657061 + MLT1D LTR MaLR 2 504 -1 333 0 0 0 chr1 230537725 230537762 -51655902 + (CA)n Simple_repeat Simple_repeat 2 38 0 720 176 15 23 chr1 230537818 230537949 -51655715 - FLAM_C SINE Alu 0 133 4 274 193 18 0 chr1 230538488 230538545 -51655119 - Charlie1b DNA MER1_type -1 522 465 2403 86 3 0 chr1 230538548 230538840 -51654824 + AluSp SINE Alu 1 293 -20 24 0 0 0 chr1 230538859 230538883 -51654781 + AT_rich Low_complexity Low_complexity 1 24 0 2451 71 0 0 chr1 230538895 230539192 -51654472 + AluY SINE Alu 1 297 -14 1692 213 65 7 chr1 230539192 230539638 -51654026 - Charlie1b DNA MER1_type -51 472 1 273 265 73 33 chr1 230539805 230539956 -51653708 + MER103 DNA DNA 3 159 -7 197 240 40 0 chr1 230540267 230540317 -51653347 - MIR SINE MIR 0 262 211 4267 157 73 58 chr1 230540325 230540413 -51653251 + L1MD1 LINE L1 4755 4840 -1402 1477 140 163 23 chr1 230540413 230540677 -51652987 - AluJo SINE Alu -11 301 1 4267 157 73 58 chr1 230540677 230541244 -51652420 + L1MD1 LINE L1 4840 5397 -845 1969 171 0 3 chr1 230541244 230541548 -51652116 + AluJb SINE Alu 1 303 -9 2287 121 0 6 chr1 230541548 230541862 -51651802 + AluSx SINE Alu 1 312 0 4267 157 73 58 chr1 230541862 230542673 -51650991 + L1MD1 LINE L1 5396 6241 -1 491 175 0 0 chr1 230542731 230542811 -51650853 + MER116 DNA Mariner 1 80 0 784 299 22 39 chr1 230542821 230543185 -51650479 - MLT1K LTR MaLR -63 525 168 261 0 0 0 chr1 230543391 230543420 -51650244 + (TA)n Simple_repeat Simple_repeat 2 30 0 2361 98 3 0 chr1 230543669 230543975 -51649689 - AluSg SINE Alu -3 307 1 3089 117 7 7 chr1 230544089 230544535 -51649129 + MER83 LTR ERV1 3 448 0 2072 143 0 3 chr1 230544602 230544896 -51648768 - AluSx SINE Alu -15 297 5 249 244 12 37 chr1 230544982 230545064 -51648600 - L1ME3A LINE L1 0 6170 6091 427 283 47 28 chr1 230545076 230545228 -51648436 + MIR3 SINE MIR 30 179 -48 3685 159 47 21 chr1 230545375 230546075 -51647589 - LTR8A LTR ERV1 0 727 10 1676 191 57 19 chr1 230546109 230546527 -51647137 - L1ME3A LINE L1 -115 6055 5622 2217 141 0 0 chr1 230546675 230546979 -51646685 + AluSx SINE Alu 1 304 -8 1217 164 19 47 chr1 230547020 230547276 -51646388 - AluJo SINE Alu -4 308 60 740 307 133 29 chr1 230547299 230547886 -51645778 + L3 LINE CR1 643 1290 -287 358 340 14 28 chr1 230547902 230548043 -51645621 + L3 LINE CR1 1436 1574 -3 299 307 34 0 chr1 230548041 230548129 -51645535 + MIR3 SINE MIR 78 168 -40 * 243 271 66 33 chr1 230548210 230548332 -51645332 - LTR67 LTR ERVL -5 552 427 264 276 17 0 chr1 230548827 230548885 -51644779 - L2 LINE L2 -7 3265 3207 382 277 119 75 chr1 230549131 230549531 -51644133 + L1 LINE L1 2818 3280 -2866 182 256 211 30 chr1 230550204 230550337 -51643327 + MIR3 SINE MIR 3 159 -49 188 35 35 0 chr1 230550488 230550517 -51643147 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr1 230550665 230550693 -51642971 + (T)n Simple_repeat Simple_repeat 1 28 0 437 204 29 19 chr1 230550742 230550845 -51642819 - MIR3 SINE MIR -31 177 74 703 254 49 41 chr1 230551401 230551645 -51642019 - MIR SINE MIR -3 259 14 1030 234 32 5 chr1 230552429 230552647 -51641017 - MER58A DNA MER1_type 0 224 1 2182 126 3 0 chr1 230552896 230553197 -51640467 - AluSx SINE Alu -10 302 1 444 279 124 97 chr1 230553478 230553858 -51639806 + L2 LINE L2 2883 3272 0 695 130 0 26 chr1 230554229 230554344 -51639320 + FRAM SINE Alu 40 151 -25 189 0 0 0 chr1 230554344 230554365 -51639299 + (CATA)n Simple_repeat Simple_repeat 2 22 0 360 0 0 0 chr1 230554383 230554423 -51639241 + (TG)n Simple_repeat Simple_repeat 1 40 0 188 239 76 54 chr1 230555850 230555942 -51637722 - L2 LINE L2 -24 3248 3155 524 55 0 14 chr1 230556409 230556482 -51637182 + (TG)n Simple_repeat Simple_repeat 2 73 0 2215 102 14 7 chr1 230556723 230557018 -51636646 + AluSg SINE Alu 1 297 -13 1763 211 52 18 chr1 230557243 230557626 -51636038 + MSTD LTR MaLR 1 396 0 214 288 138 62 chr1 230558223 230558383 -51635281 - L2 LINE L2 -1 3312 3141 * 1407 249 34 11 chr1 230558382 230558763 -51634901 + L2 LINE L2 2503 2892 -422 308 273 34 0 chr1 230558876 230558964 -51634700 - MIR SINE MIR -105 157 67 563 101 0 11 chr1 230560053 230560142 -51633522 + (TTC)n Simple_repeat Simple_repeat 2 89 0 237 216 15 41 chr1 230560147 230560234 -51633430 + CT-rich Low_complexity Low_complexity 1 84 0 409 265 67 85 chr1 230560314 230560537 -51633127 + MIR SINE MIR 20 238 -24 1710 133 60 3 chr1 230561239 230561524 -51632140 - AluSx SINE Alu -11 301 1 195 143 167 0 chr1 230561851 230561893 -51631771 - L2 LINE L2 -73 3240 3192 212 333 67 8 chr1 230562947 230563067 -51630597 + L2 LINE L2 2661 2787 -527 498 315 51 0 chr1 230564917 230565095 -51628569 + MIR SINE MIR 34 220 -42 256 235 62 49 chr1 230565327 230565408 -51628256 + MIR3 SINE MIR 79 160 -48 1048 248 12 8 chr1 230565419 230565669 -51627995 + MIR SINE MIR 12 262 0 203 214 0 0 chr1 230565697 230565739 -51627925 + MIR3 SINE MIR 156 197 -11 215 361 0 0 chr1 230566626 230566687 -51626977 - MIR3 SINE MIR -1 207 147 1770 154 7 10 chr1 230566937 230567236 -51626428 - AluSc SINE Alu -11 298 1 712 177 0 0 chr1 230567529 230567642 -51626022 + FLAM_C SINE Alu 5 117 -16 327 276 164 37 chr1 230567972 230568186 -51625478 + L2 LINE L2 2640 2880 -434 * 464 272 26 84 chr1 230568180 230568371 -51625293 + L2 LINE L2 3092 3271 -1 230 203 31 16 chr1 230569220 230569284 -51624380 + MIR3 SINE MIR 133 197 -11 207 182 0 23 chr1 230569328 230569372 -51624292 + G-rich Low_complexity Low_complexity 2 44 0 2169 134 3 10 chr1 230572013 230572348 -51621316 - AluSx SINE Alu 0 312 1 2347 105 0 0 chr1 230573743 230574048 -51619616 - AluSx SINE Alu -7 305 1 23 0 0 0 chr1 230574354 230574377 -51619287 + AT_rich Low_complexity Low_complexity 1 23 0 786 247 52 40 chr1 230574786 230574952 -51618712 + MIR SINE MIR 4 175 -87 2194 118 3 0 chr1 230574952 230575241 -51618423 - AluSx SINE Alu -22 290 1 786 247 52 40 chr1 230575241 230575325 -51618339 + MIR SINE MIR 175 257 -5 658 249 64 79 chr1 230575342 230575607 -51618057 - MIR SINE MIR 0 262 2 334 306 65 19 chr1 230575657 230575765 -51617899 + L2 LINE L2 3125 3237 -35 249 281 101 11 chr1 230576170 230576259 -51617405 + MIR SINE MIR 44 140 -68 584 293 64 67 chr1 230576437 230576721 -51616943 - MLT1J LTR MaLR -8 503 220 2199 116 0 19 chr1 230576721 230577031 -51616633 - AluSx SINE Alu -8 304 1 1899 137 38 10 chr1 230577031 230577323 -51616341 - AluJo SINE Alu -12 300 1 584 293 64 67 chr1 230577323 230577443 -51616221 - MLT1J LTR MaLR -289 222 99 239 193 35 35 chr1 230577392 230577449 -51616215 - LTR67 LTR ERVL -404 153 97 * 448 317 73 0 chr1 230577524 230577688 -51615976 + MER102a DNA MER1_type 155 330 0 243 250 131 24 chr1 230578426 230578510 -51615154 + MIR SINE MIR 58 150 -58 586 276 29 6 chr1 230579189 230579363 -51614301 + MIR SINE MIR 47 224 -38 2580 71 0 0 chr1 230579416 230579726 -51613938 - AluY SINE Alu -1 310 1 382 270 141 72 chr1 230579732 230579995 -51613669 - L3b LINE CR1 -116 1467 1187 230 280 0 0 chr1 230580001 230580051 -51613613 + L2 LINE L2 3214 3263 -9 531 266 23 0 chr1 230580870 230580998 -51612666 + MIR SINE MIR 61 191 -71 219 214 266 7 chr1 230581007 230581161 -51612503 + L2 LINE L2 2809 3002 -311 235 44 44 44 chr1 230581269 230581314 -51612350 + (TTTC)n Simple_repeat Simple_repeat 4 48 0 438 274 45 54 chr1 230581326 230581378 -51612286 + L2 LINE L2 3077 3128 -185 2015 117 4 4 chr1 230581378 230581651 -51612013 - AluSx SINE Alu -39 273 1 438 274 45 54 chr1 230581651 230581821 -51611843 + L2 LINE L2 3128 3297 -16 459 280 90 21 chr1 230583210 230583399 -51610265 + MIR SINE MIR 20 221 -41 431 278 62 26 chr1 230583445 230583639 -51610025 - MIR3 SINE MIR -6 202 2 469 217 127 0 chr1 230593469 230593626 -51600038 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 319 191 105 0 chr1 230593653 230593805 -51599859 + (AAGTG)n Simple_repeat Simple_repeat 5 172 0 367 192 102 42 chr1 230593831 230593998 -51599666 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 * 383 221 127 0 chr1 230593965 230594123 -51599541 + (GAATG)n Simple_repeat Simple_repeat 2 179 0 317 208 91 0 chr1 230594135 230594289 -51599375 + (AAGTG)n Simple_repeat Simple_repeat 5 172 0 210 216 99 6 chr1 230594305 230594467 -51599197 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 206 202 113 0 chr1 230594493 230594617 -51599047 + (GAATG)n Simple_repeat Simple_repeat 1 138 0 248 195 92 35 chr1 230594618 230594705 -51598959 + (GAGTG)n Simple_repeat Simple_repeat 1 92 0 211 217 105 0 chr1 230594706 230594858 -51598806 + (AAGTG)n Simple_repeat Simple_repeat 5 172 0 358 186 124 0 chr1 230594858 230594971 -51598693 + (GAATG)n Simple_repeat Simple_repeat 1 127 0 258 188 121 0 chr1 230594972 230595121 -51598543 + (GAGTG)n Simple_repeat Simple_repeat 1 167 0 * 309 185 115 0 chr1 230595107 230595264 -51598400 + (AAGTG)n Simple_repeat Simple_repeat 5 179 0 23 33 0 0 chr1 230596040 230596070 -51597594 + AT_rich Low_complexity Low_complexity 1 30 0 10641 54 3 9 chr1 230596836 230598862 -51594802 + L1PA6 LINE L1 3994 6003 -151 768 294 34 34 chr1 230598954 230599274 -51594390 + L3 LINE CR1 1036 1355 -222 878 249 84 38 chr1 230599368 230599842 -51593822 + L1MEc LINE L1 1068 1563 -5044 509 203 17 8 chr1 230599836 230599954 -51593710 + L1M4 LINE L1 3497 3615 -2531 * 360 302 137 13 chr1 230599999 230600175 -51593489 + L1MEc LINE L1 1412 1761 -4846 43047 34 1 4 chr1 230600180 230606351 -51587313 + L1PA3 LINE L1 2 6155 0 1042 270 56 15 chr1 230606320 230606786 -51586878 + L1MEc LINE L1 3131 3615 -2531 * 599 255 109 4 chr1 230606791 230607038 -51586626 + L1M4 LINE L1 4812 5084 -1062 267 276 138 0 chr1 230607042 230607129 -51586535 - MIR SINE MIR -114 148 50 10699 52 4 0 chr1 230607149 230609337 -51584327 - L1PA6 LINE L1 -1 6153 3983 288 328 82 10 chr1 230609698 230609893 -51583771 + L2 LINE L2 2891 3099 -173 2373 112 0 6 chr1 230612729 230613043 -51580621 + AluSq SINE Alu 2 313 0 1643 79 0 0 chr1 230614845 230615047 -51578617 - AluY SINE Alu -12 299 98 520 204 113 81 chr1 230616345 230616444 -51577220 - MIR SINE MIR -70 192 98 2124 98 3 14 chr1 230616444 230616768 -51576896 + AluSx SINE Alu 1 321 0 520 204 113 81 chr1 230616768 230616853 -51576811 - MIR SINE MIR -164 98 1 307 284 37 52 chr1 230617683 230617817 -51575847 - MIR3 SINE MIR -67 141 10 535 290 80 27 chr1 230618032 230618256 -51575408 + MIR SINE MIR 21 256 -6 921 185 17 6 chr1 230619197 230619370 -51574294 - MER5B DNA MER1_type -3 175 1 432 274 157 0 chr1 230619378 230619531 -51574133 - MER5A DNA MER1_type 0 189 13 1737 182 14 0 chr1 230619648 230619939 -51573725 + AluJo SINE Alu 13 307 -5 661 178 21 12 chr1 230619951 230620186 -51573478 + GA-rich Low_complexity Low_complexity 1 236 0 232 343 143 0 chr1 230621351 230621456 -51572208 + L2 LINE L2 3153 3272 0 1006 195 0 0 chr1 230621619 230621788 -51571876 - FRAM SINE Alu 0 176 8 314 249 13 27 chr1 230622311 230622418 -51571246 + MIR SINE MIR 17 121 -91 245 254 183 56 chr1 230622483 230622609 -51571055 - MIR3 SINE MIR -53 155 14 323 311 57 0 chr1 230622767 230622889 -51570775 - MIR SINE MIR -59 149 21 617 154 8 26 chr1 230622998 230623115 -51570549 - MER20 DNA MER1_type -62 157 43 361 275 20 34 chr1 230625701 230625850 -51567814 + L3b LINE CR1 1306 1452 -131 231 88 0 0 chr1 230625932 230625966 -51567698 + (CAGGG)n Simple_repeat Simple_repeat 3 36 0 647 299 95 9 chr1 230626224 230626445 -51567219 - MIR SINE MIR -17 245 6 37787 43 3 4 chr1 230629373 230634225 -51559439 - L1P LINE L1 -1300 4846 2 354 318 119 6 chr1 230634230 230634406 -51559258 - L1MEc LINE L1 -4846 1550 1355 509 203 17 8 chr1 230634451 230634569 -51559095 - L1M4 LINE L1 -2531 3615 3497 * 1338 250 71 29 chr1 230634563 230635214 -51558450 - L1MEc LINE L1 -5044 1352 675 628 222 16 26 chr1 230635291 230635480 -51558184 - L1MEc LINE L1 -5928 277 91 808 314 70 52 chr1 230635481 230636620 -51557044 - L1M4 LINE L1 -926 5220 4061 320 315 69 0 chr1 230636645 230636775 -51556889 + L2 LINE L2 3122 3260 -12 365 353 18 18 chr1 230637056 230637223 -51556441 + L1ME LINE L1 4891 5057 -1089 479 309 40 60 chr1 230637477 230637726 -51555938 + L1ME LINE L1 5406 5649 -472 306 290 38 21 chr1 230637865 230638103 -51555561 + L1ME3A LINE L1 2821 3062 -3084 923 312 113 6 chr1 230638120 230638457 -51555207 + MLT1J2 LTR MaLR 71 443 -7 955 295 84 36 chr1 230638473 230638968 -51554696 + L1ME3A LINE L1 3080 3631 -2515 1731 199 5 59 chr1 230638968 230639359 -51554305 + MLT1A2 LTR MaLR 1 370 -4 955 295 84 36 chr1 230639359 230639687 -51553977 + L1ME3A LINE L1 3631 3942 -2204 644 231 36 68 chr1 230639698 230639919 -51553745 + MIR SINE MIR 7 220 -42 2396 279 84 46 chr1 230639948 230641558 -51552106 + L1ME3A LINE L1 3942 5640 -522 2319 99 10 0 chr1 230641558 230641860 -51551804 - AluSg SINE Alu -5 305 1 2396 279 84 46 chr1 230641860 230642195 -51551469 + L1ME3A LINE L1 5640 5961 -201 238 268 21 41 chr1 230642270 230642367 -51551297 + L1ME3A LINE L1 5967 6061 -109 902 242 49 74 chr1 230643305 230643710 -51549954 + L2 LINE L2 2919 3313 0 2621 117 42 0 chr1 230643717 230644126 -51549538 - MSTC LTR MaLR 0 428 3 460 267 100 13 chr1 230644142 230644292 -51549372 + MIR SINE MIR 26 188 -74 180 308 91 35 chr1 230644999 230645142 -51548522 + MIR SINE MIR 37 187 -75 531 344 47 31 chr1 230645361 230645678 -51547986 - L2 LINE L2 0 3272 2951 329 268 134 8 chr1 230646519 230646646 -51547018 + MIR SINE MIR 118 260 -2 270 292 149 6 chr1 230646931 230647092 -51546572 + MIR3 SINE MIR 18 201 -7 264 77 0 0 chr1 230647980 230648019 -51545645 + (CAGCC)n Simple_repeat Simple_repeat 3 41 0 337 319 113 0 chr1 230648074 230648215 -51545449 - MIR3 SINE MIR -42 166 10 391 224 75 0 chr1 230648314 230648421 -51545243 + MIR SINE MIR 74 188 -74 284 281 64 29 chr1 230649783 230649954 -51543710 + (AAGTG)n Simple_repeat Simple_repeat 1 177 0 * 429 224 135 0 chr1 230649867 230650023 -51543641 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 425 231 113 0 chr1 230649961 230650121 -51543543 + (GAATG)n Simple_repeat Simple_repeat 1 178 0 * 465 210 127 0 chr1 230650086 230650243 -51543421 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 394 217 0 53 chr1 230650224 230650413 -51543251 + GA-rich Low_complexity Low_complexity 1 179 0 * 405 166 0 64 chr1 230650298 230650485 -51543179 + (TGAG)n Simple_repeat Simple_repeat 2 176 0 * 438 200 109 36 chr1 230650372 230650537 -51543127 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 225 179 113 0 chr1 230650563 230650669 -51542995 + (GAATG)n Simple_repeat Simple_repeat 1 118 0 415 210 111 25 chr1 230650679 230650882 -51542782 + (GAGTG)n Simple_repeat Simple_repeat 1 220 0 312 241 120 0 chr1 230651103 230651261 -51542403 + (GAGTG)n Simple_repeat Simple_repeat 1 177 0 312 266 109 54 chr1 230652024 230652208 -51541456 - L1ME1 LINE L1 0 6166 5973 264 224 164 45 chr1 230652591 230652725 -51540939 + MIR3 SINE MIR 20 169 -39 387 255 149 31 chr1 230653026 230653187 -51540477 - MIR SINE MIR -17 245 66 221 221 168 35 chr1 230653720 230653833 -51539831 + L2 LINE L2 3181 3308 -5 215 100 0 25 chr1 230653925 230653965 -51539699 + (TTCCC)n Simple_repeat Simple_repeat 3 41 0 748 161 156 0 chr1 230654215 230654401 -51539263 + Charlie5 DNA MER1_type 2363 2577 -35 623 308 45 0 chr1 230654767 230654965 -51538699 - MIR SINE MIR -44 218 12 270 281 70 18 chr1 230655956 230656070 -51537594 + MIR SINE MIR 100 219 -43 2192 253 128 45 chr1 230656289 230656494 -51537170 - HAL1b LINE L1 0 1348 1162 1828 180 0 10 chr1 230656494 230656800 -51536864 - AluJo SINE Alu -9 303 1 2192 253 128 45 chr1 230656800 230657726 -51535938 - HAL1b LINE L1 -186 1162 107 797 109 0 8 chr1 230657726 230657854 -51535810 + (TTCC)n Simple_repeat Simple_repeat 3 129 0 2192 253 128 45 chr1 230657854 230657932 -51535732 - HAL1b LINE L1 -1241 107 37 222 323 40 0 chr1 230658548 230658647 -51535017 + L3b LINE CR1 1262 1364 -219 476 320 103 13 chr1 230658846 230659080 -51534584 - MIR SINE MIR 0 262 8 2563 172 67 0 chr1 230659232 230659743 -51533921 + L1MB3 LINE L1 5637 6181 -2 290 276 157 22 chr1 230659756 230659890 -51533774 + MER5A DNA MER1_type 38 189 0 218 255 0 0 chr1 230660575 230660626 -51533038 + CT-rich Low_complexity Low_complexity 2 52 0 271 207 52 0 chr1 230663079 230663137 -51530527 - MIR SINE MIR -71 191 131 186 259 12 71 chr1 230663248 230663333 -51530331 - MIR SINE MIR -50 212 133 595 244 160 0 chr1 230663364 230663520 -51530144 + MER5A DNA MER1_type 9 189 0 314 244 0 79 chr1 230663530 230663657 -51530007 - MIR3 SINE MIR -54 154 38 1037 230 22 78 chr1 230664579 230664979 -51528685 - MLT1B LTR MaLR -2 388 11 414 291 46 46 chr1 230665051 230665247 -51528417 + MIR SINE MIR 1 196 -66 272 220 46 73 chr1 230667234 230667343 -51526321 + MIR3 SINE MIR 88 193 -15 573 336 47 0 chr1 230667634 230667848 -51525816 - MIR SINE MIR -14 248 25 2079 119 0 19 chr1 230667848 230668160 -51525504 - AluSc SINE Alu -3 306 1 191 275 132 22 chr1 230669392 230669483 -51524181 - L2 LINE L2 -5 3308 3208 2365 46 0 0 chr1 230669718 230670030 -51523634 + AluY SINE Alu 1 312 0 469 288 38 12 chr1 230670086 230670246 -51523418 + Charlie5 DNA MER1_type 1 164 -2448 470 276 193 43 chr1 230670287 230670660 -51523004 + L2 LINE L2 2883 3311 -2 182 222 16 32 chr1 230670661 230670724 -51522940 - L2 LINE L2 -345 2969 2908 1764 121 4 0 chr1 230671217 230671465 -51522199 + AluSx SINE Alu 1 249 -63 535 261 35 0 chr1 230671480 230671595 -51522069 + L2 LINE L2 3153 3271 -1 406 323 67 6 chr1 230672218 230672382 -51521282 - MIR3 SINE MIR -1 207 34 467 262 48 8 chr1 230672533 230672659 -51521005 + MIR SINE MIR 108 238 -24 315 344 110 6 chr1 230673080 230673243 -51520421 + MIR3 SINE MIR 17 196 -12 211 174 29 116 chr1 230674151 230674220 -51519444 - L2 LINE L2 0 3313 3251 351 0 0 0 chr1 230676617 230676656 -51517008 + (CA)n Simple_repeat Simple_repeat 1 39 0 212 229 25 24 chr1 230679319 230679447 -51514217 + (CA)n Simple_repeat Simple_repeat 1 128 0 351 275 92 49 chr1 230679499 230679641 -51514023 + MIR3 SINE MIR 61 208 0 863 183 24 6 chr1 230679773 230679942 -51513722 - MER5B DNA MER1_type -6 172 1 270 0 0 0 chr1 230681079 230681109 -51512555 + (CA)n Simple_repeat Simple_repeat 1 30 0 349 313 106 17 chr1 230683633 230683812 -51509852 - MIR3 SINE MIR -2 206 12 506 247 65 29 chr1 230685911 230686081 -51507583 + MIR SINE MIR 49 224 -38 330 257 0 0 chr1 230686181 230686255 -51507409 - L2 LINE L2 0 3313 3240 220 325 0 26 chr1 230686273 230686350 -51507314 + MIR3 SINE MIR 123 197 -11 485 229 26 78 chr1 230687031 230687184 -51506480 + MIR SINE MIR 46 190 -72 232 336 67 13 chr1 230687932 230688081 -51505583 - L2 LINE L2 0 3272 3116 794 280 68 29 chr1 230688114 230688421 -51505243 + MARNA DNA Mariner 128 446 -140 459 277 15 24 chr1 230688835 230689000 -51504664 - MIR3 SINE MIR -52 156 31 433 238 0 0 chr1 230689327 230689432 -51504232 - MER53 DNA DNA -84 105 1 382 254 58 9 chr1 230690605 230690735 -51502929 + MIR SINE MIR 50 186 -65 363 357 40 0 chr1 230690749 230690875 -51502789 + MIR3 SINE MIR 29 159 -49 203 321 182 6 chr1 230691916 230692075 -51501589 + MIR3 SINE MIR 18 204 -4 314 163 10 10 chr1 230693260 230693328 -51500336 + MIR3 SINE MIR 102 170 -38 289 318 26 66 chr1 230693551 230693702 -51499962 - MIR SINE MIR -70 192 48 343 266 70 8 chr1 230694282 230694410 -51499254 - MIR3 SINE MIR -65 143 8 283 139 139 0 chr1 230694446 230694525 -51499139 + MER113 DNA MER1_type? 4 93 -428 236 121 0 0 chr1 230694554 230694613 -51499051 - FLAM_C SINE Alu 0 144 86 1002 168 128 5 chr1 230694613 230694809 -51498855 - AluJo SINE Alu -92 220 1 807 255 118 36 chr1 230694814 230694979 -51498685 + MER113 DNA MER1_type? 121 271 -250 189 74 0 0 chr1 230694979 230695006 -51498658 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 807 255 118 36 chr1 230695006 230695205 -51498459 + MER113 DNA MER1_type? 271 515 -6 283 309 56 16 chr1 230696144 230696270 -51497394 + MIR3 SINE MIR 2 132 -76 1615 193 24 0 chr1 230696616 230696912 -51496752 + AluJo SINE Alu 1 303 -9 2041 78 41 27 chr1 230698055 230698349 -51495315 - AluY SINE Alu -11 300 3 421 308 111 17 chr1 230701117 230701289 -51492375 + MER20 DNA MER1_type 32 219 0 698 246 96 0 chr1 230701617 230701804 -51491860 - MIR SINE MIR -42 220 16 189 344 32 21 chr1 230703768 230703861 -51489803 + MIR SINE MIR 43 136 -72 617 190 130 54 chr1 230704199 230704383 -51489281 + MER112 DNA MER1_type 51 248 -12 201 264 0 19 chr1 230704390 230704443 -51489221 + MIR3 SINE MIR 154 205 -3 1060 173 16 0 chr1 230705213 230705398 -51488266 + MER5A DNA MER1_type 2 189 0 1936 123 0 30 chr1 230705555 230705881 -51487783 + AluJb SINE Alu 3 319 0 233 308 77 60 chr1 230706109 230706226 -51487438 - L2 LINE L2 0 3272 3154 393 200 148 0 chr1 230706252 230706367 -51487297 - MIR SINE MIR -54 208 77 323 228 13 0 chr1 230707047 230707126 -51486538 - MER116 DNA Mariner 0 80 1 1071 139 0 0 chr1 230707434 230707614 -51486050 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 239 324 44 74 chr1 230708648 230708849 -51484815 - MIR3 SINE MIR -26 236 29 184 143 0 41 chr1 230711500 230711549 -51482115 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 334 308 0 35 chr1 230711564 230711707 -51481957 + C-rich Low_complexity Low_complexity 3 140 0 462 312 48 22 chr1 230711963 230712194 -51481470 + MIR SINE MIR 12 248 -14 407 311 144 0 chr1 230713080 230713247 -51480417 - MIR SINE MIR -25 237 47 191 325 58 33 chr1 230717616 230717736 -51475928 - L2 LINE L2 -477 2837 2715 307 206 16 0 chr1 230720550 230720613 -51473051 - MER91A DNA MER1_type 0 140 77 482 337 11 11 chr1 230720805 230720983 -51472681 - MER5A DNA MER1_type -4 185 8 195 204 0 0 chr1 230721797 230721841 -51471823 + (TG)n Simple_repeat Simple_repeat 2 45 0 400 302 23 0 chr1 230723402 230723531 -51470133 - L2 LINE L2 0 3313 3182 286 304 67 37 chr1 230724602 230724737 -51468927 - MIR SINE MIR -80 182 44 690 216 14 7 chr1 230724786 230724934 -51468730 - AluJ SINE Alu -2 310 162 * 784 146 0 0 chr1 230724928 230725038 -51468626 - AluJ SINE Alu -202 110 1 189 358 98 6 chr1 230725045 230725218 -51468446 - L2 LINE L2 -17 3296 3108 1309 205 77 17 chr1 230725563 230725923 -51467741 - L1ME3A LINE L1 -3 6159 5775 537 293 17 19 chr1 230726592 230726775 -51466889 - MIR3 SINE MIR -64 144 12 463 332 53 5 chr1 230727614 230727804 -51465860 - MIR SINE MIR -59 203 5 366 265 20 10 chr1 230728640 230728738 -51464926 - MIR3 SINE MIR -49 159 61 232 308 0 0 chr1 230728860 230728912 -51464752 + L2 LINE L2 3128 3179 -93 543 252 13 0 chr1 230729034 230729185 -51464479 - L2 LINE L2 -1223 2091 1939 387 0 0 0 chr1 230729216 230729259 -51464405 + (CA)n Simple_repeat Simple_repeat 1 43 0 2116 104 10 3 chr1 230729525 230729823 -51463841 + AluSp SINE Alu 1 300 -13 766 143 27 0 chr1 230729851 230729963 -51463701 + FLAM_C SINE Alu 2 116 -27 200 35 35 0 chr1 230729964 230729993 -51463671 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 678 250 180 0 chr1 230729993 230730237 -51463427 - L2 LINE L2 -1111 2203 1916 1003 191 9 35 chr1 230730273 230730503 -51463161 - L1ME2 LINE L1 -10 6154 5931 1847 103 4 4 chr1 230730513 230730774 -51462890 + AluSc SINE Alu 38 298 -11 2165 97 0 28 chr1 230730784 230731103 -51462561 + AluSq SINE Alu 1 310 -3 3201 273 51 28 chr1 230731104 230734027 -51459637 - L1ME LINE L1 -2815 3265 45 3860 257 105 10 chr1 230734049 230735322 -51458342 - L2 LINE L2 -1384 1930 537 401 303 147 38 chr1 230736060 230736636 -51457028 + L2 LINE L2 2407 3046 -226 1086 312 99 10 chr1 230736802 230737299 -51456365 - L3 LINE CR1 -1 1576 1036 215 244 205 63 chr1 230737667 230737794 -51455870 + MIR3 SINE MIR 60 204 -4 744 50 0 0 chr1 230738598 230738699 -51454965 + (TG)n Simple_repeat Simple_repeat 2 102 0 261 238 36 0 chr1 230738771 230738855 -51454809 + MER103 DNA DNA 16 102 -64 360 244 15 4 chr1 230739329 230739464 -51454200 - MER5A DNA MER1_type 0 189 4 914 217 56 56 chr1 230740164 230740234 -51453430 - MIR SINE MIR -1 261 192 2200 107 0 0 chr1 230740234 230740534 -51453130 - AluSq SINE Alu -13 300 1 914 217 56 56 chr1 230740534 230740712 -51452952 - MIR SINE MIR -69 193 13 398 271 153 46 chr1 230741113 230741394 -51452270 - L2 LINE L2 -1 3312 3002 192 389 71 0 chr1 230744031 230744144 -51449520 - MIR3 SINE MIR -85 123 3 454 227 70 81 chr1 230747512 230747697 -51445967 + MIR3 SINE MIR 15 197 -11 257 344 98 8 chr1 230748586 230748708 -51444956 - MIR SINE MIR -59 149 17 320 355 8 8 chr1 230750277 230750398 -51443266 - MIR SINE MIR -121 141 21 257 345 44 9 chr1 230750517 230750630 -51443034 - MIR SINE MIR -113 149 33 508 255 130 16 chr1 230750673 230750920 -51442744 - L1MD2 LINE L1 -2 6357 6083 680 155 10 0 chr1 230751021 230751124 -51442540 + AluSg/x SINE Alu 175 278 -32 345 311 22 15 chr1 230751124 230751259 -51442405 - MIR SINE MIR -120 142 7 1435 156 5 0 chr1 230754822 230755046 -51438618 + AluJb SINE Alu 5 229 -83 228 245 0 0 chr1 230756455 230756504 -51437160 + (TG)n Simple_repeat Simple_repeat 1 49 0 562 219 47 110 chr1 230756930 230757231 -51436433 - L1MC5 LINE L1 -37 7924 7643 535 294 76 19 chr1 230758547 230758758 -51434906 - MIR SINE MIR -32 230 8 200 261 29 43 chr1 230760159 230760228 -51433436 - L2 LINE L2 0 3272 3205 533 260 20 34 chr1 230761461 230761607 -51432057 + MER91A DNA MER1_type 1 144 -52 435 298 55 14 chr1 230762150 230762351 -51431313 + MIR SINE MIR 30 237 -25 235 319 33 67 chr1 230763066 230763276 -51430388 + L2 LINE L2 3028 3230 -42 275 214 114 0 chr1 230763967 230764002 -51429662 + AluSp SINE Alu 93 135 -168 2249 97 13 0 chr1 230764002 230764310 -51429354 + AluSp SINE Alu 1 312 -1 240 311 48 19 chr1 230764311 230764414 -51429250 - L2 LINE L2 -16 3297 3192 190 333 0 0 chr1 230764937 230764997 -51428667 + L3b LINE CR1 1324 1383 -200 414 254 138 11 chr1 230765172 230765354 -51428310 + MIR SINE MIR 6 213 -49 202 219 24 122 chr1 230766474 230766556 -51427108 + MIR3 SINE MIR 93 166 -42 595 282 83 0 chr1 230767643 230767824 -51425840 + MIR SINE MIR 4 199 -63 297 292 31 0 chr1 230767817 230767913 -51425751 - MIR SINE MIR -1 261 163 * 285 316 0 13 chr1 230767908 230767984 -51425680 + MIR SINE MIR 188 262 0 * 693 297 58 64 chr1 230770166 230770543 -51423121 - L2 LINE L2 0 3272 2898 2068 121 8 102 chr1 230770929 230771301 -51422363 - MER1B DNA MER1_type 0 337 1 1078 91 30 156 chr1 230771340 230771571 -51422093 + AluSc SINE Alu 1 202 -107 520 306 151 0 chr1 230772615 230772801 -51420863 + MIR SINE MIR 33 246 -16 659 259 78 10 chr1 230773492 230773685 -51419979 - MIR SINE MIR -37 225 20 500 310 46 6 chr1 230775231 230775405 -51418259 - MIR SINE MIR -1 261 81 225 340 94 14 chr1 230776178 230776390 -51417274 - L2 LINE L2 -8 3305 3077 329 158 53 0 chr1 230776396 230776491 -51417173 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 217 218 0 36 chr1 230776491 230776546 -51417118 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 243 296 176 25 chr1 230777859 230778018 -51415646 + MIR SINE MIR 22 204 -4 196 292 0 0 chr1 230778480 230778528 -51415136 - L2 LINE L2 -17 3255 3208 790 277 92 34 chr1 230778533 230778915 -51414749 - MLT1C LTR MaLR 0 467 24 314 384 32 0 chr1 230779140 230779325 -51414339 - L2 LINE L2 -213 3059 2869 1969 130 0 36 chr1 230779409 230779716 -51413948 + AluSx SINE Alu 1 296 -16 290 302 92 48 chr1 230779752 230780047 -51413617 - L2 LINE L2 -638 2676 2369 519 173 45 0 chr1 230780065 230780175 -51413489 - MER20 DNA MER1_type -1 218 104 206 352 11 11 chr1 230780176 230780264 -51413400 - L2 LINE L2 -978 2336 2249 278 373 78 7 chr1 230780339 230780481 -51413183 + L2 LINE L2 3113 3264 -8 448 301 199 3 chr1 230780630 230780956 -51412708 + L1ME3A LINE L1 5505 5894 -276 355 348 49 37 chr1 230781060 230781224 -51412440 + L1ME3A LINE L1 5963 6128 -42 311 235 148 0 chr1 230782350 230782431 -51411233 + MIR SINE MIR 29 121 -87 296 330 0 11 chr1 230783349 230783440 -51410224 + MIR SINE MIR 38 127 -81 870 256 76 0 chr1 230783533 230783771 -51409893 + MIR SINE MIR 7 262 0 2387 91 0 0 chr1 230784943 230785250 -51408414 + AluSg SINE Alu 1 307 -3 292 219 90 112 chr1 230787049 230787101 -51406563 - MIR3 SINE MIR -4 204 152 826 155 213 0 chr1 230787101 230787256 -51406408 - MER5A DNA MER1_type -1 188 1 292 219 90 112 chr1 230787256 230787381 -51406283 - MIR3 SINE MIR -56 152 31 2408 109 9 15 chr1 230788846 230789185 -51404479 - MER1B DNA MER1_type 0 337 1 383 260 84 17 chr1 230789721 230789909 -51403755 + MIR SINE MIR 15 212 -50 710 71 0 0 chr1 230790521 230790638 -51403026 + AluSc SINE Alu 194 310 0 2108 130 3 0 chr1 230790652 230790945 -51402719 + AluSx SINE Alu 1 294 -18 329 148 0 0 chr1 230790955 230791009 -51402655 - AluJo SINE Alu -66 236 183 829 164 0 15 chr1 230791011 230791145 -51402519 - AluJo SINE Alu -179 133 2 203 245 31 92 chr1 230792167 230792265 -51401399 + MIR SINE MIR 125 216 -46 272 234 0 31 chr1 230794601 230794665 -51398999 + MER58 DNA MER1_type 1 55 -160 189 0 0 0 chr1 230794673 230794694 -51398970 + (T)n Simple_repeat Simple_repeat 1 21 0 284 206 178 0 chr1 230794694 230794767 -51398897 + MER58 DNA MER1_type 128 2418 -2 2193 107 3 0 chr1 230794817 230795116 -51398548 + AluSg SINE Alu 1 300 -10 193 293 61 0 chr1 230795133 230795215 -51398449 - L2 LINE L2 -502 2812 2726 186 255 59 0 chr1 230795393 230795444 -51398220 + MIR3 SINE MIR 105 158 -50 42 20 0 0 chr1 230795461 230795510 -51398154 + AT_rich Low_complexity Low_complexity 1 49 0 1254 93 22 6 chr1 230795586 230795768 -51397896 + L1PA12 LINE L1 5984 6168 0 253 253 0 0 chr1 230797504 230797579 -51396085 + (TG)n Simple_repeat Simple_repeat 2 76 0 369 0 0 0 chr1 230798810 230798851 -51394813 + (CA)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr1 230800186 230800208 -51393456 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1782 139 7 56 chr1 230800212 230800514 -51393150 - AluSx SINE Alu -25 287 1 2497 176 51 16 chr1 230801347 230801835 -51391829 + MLT1D LTR MaLR 1 505 0 193 244 397 8 chr1 230802032 230802163 -51391501 - MIR3 SINE MIR -7 201 20 257 284 29 10 chr1 230802189 230802236 -51391428 + (CCCTAA)n Simple_repeat Simple_repeat 1 46 -58 2478 69 0 0 chr1 230802236 230802539 -51391125 - AluY SINE Alu -8 303 1 257 284 29 10 chr1 230802539 230802593 -51391071 + (CCCTAA)n Simple_repeat Simple_repeat 46 104 0 190 243 0 0 chr1 230802853 230802890 -51390774 + MIR SINE MIR 108 144 -118 846 169 0 0 chr1 230802987 230803123 -51390541 - AluJo SINE Alu -176 136 1 721 264 83 29 chr1 230803886 230804128 -51389536 + MIR SINE MIR 6 260 -2 565 296 23 0 chr1 230804128 230804304 -51389360 - MIR SINE MIR -63 199 20 1787 149 13 17 chr1 230804460 230804761 -51388903 + AluJb SINE Alu 1 300 -12 231 307 79 10 chr1 230805919 230806020 -51387644 - L2 LINE L2 -10 3303 3196 384 278 37 9 chr1 230806021 230806129 -51387535 - MIR3 SINE MIR -87 121 11 294 287 238 7 chr1 230806370 230806513 -51387151 + MIR SINE MIR 73 248 -14 2041 104 21 0 chr1 230806598 230806886 -51386778 + AluSx SINE Alu 1 294 -18 2294 102 0 0 chr1 230806889 230807193 -51386471 + AluSc SINE Alu 1 304 -5 537 357 46 4 chr1 230807225 230807463 -51386201 + MIR SINE MIR 15 262 0 647 211 113 92 chr1 230807895 230808017 -51385647 + MER33 DNA MER1_type 23 141 -2444 1862 146 7 36 chr1 230808017 230808326 -51385338 + AluSx SINE Alu 1 300 -12 647 211 113 92 chr1 230808326 230808403 -51385261 + MER33 DNA MER1_type 141 215 -2370 1996 162 3 0 chr1 230808403 230808705 -51384959 - AluJb SINE Alu -9 303 1 647 211 113 92 chr1 230808705 230808750 -51384914 + MER33 DNA MER1_type 215 258 -2327 1717 108 82 43 chr1 230808750 230809029 -51384635 + AluSx SINE Alu 1 290 -22 647 211 113 92 chr1 230809029 230809066 -51384598 + MER33 DNA MER1_type 258 312 -12 1036 190 58 0 chr1 230809105 230809310 -51384354 - MER20 DNA MER1_type -2 217 1 281 407 87 12 chr1 230809946 230810268 -51383396 - L2 LINE L2 -1 3271 2926 280 279 176 15 chr1 230810581 230810717 -51382947 + MIR3 SINE MIR 39 196 -12 1235 287 115 36 chr1 230810729 230811592 -51382072 - L2 LINE L2 -4 3309 2370 350 317 173 17 chr1 230811654 230811950 -51381714 - L2 LINE L2 -1212 2102 1743 2154 128 0 0 chr1 230811950 230812248 -51381416 + AluSx SINE Alu 1 298 -14 350 317 173 17 chr1 230812248 230812298 -51381366 - L2 LINE L2 -1571 1743 1702 857 106 8 8 chr1 230812415 230812538 -51381126 + FLAM_C SINE Alu 1 123 -20 246 235 20 0 chr1 230812596 230812647 -51381017 + L2 LINE L2 3204 3255 -17 1063 268 33 86 chr1 231013620 231013733 -51179931 - L2 LINE L2 -2 3311 3194 1993 150 0 7 chr1 231013733 231014027 -51179637 - AluJb SINE Alu -13 299 8 1063 268 33 86 chr1 231014027 231014039 -51179625 - L2 LINE L2 -119 3194 3183 1995 154 6 3 chr1 231014039 231014350 -51179314 - AluJo SINE Alu 0 312 1 1063 268 33 86 chr1 231014350 231014564 -51179100 - L2 LINE L2 -130 3183 2959 2187 118 0 10 chr1 231014564 231014861 -51178803 - AluSx SINE Alu -18 294 1 1063 268 33 86 chr1 231014861 231015307 -51178357 - L2 LINE L2 -354 2959 2586 1137 80 126 0 chr1 231015396 231015547 -51178117 - AluSq SINE Alu -6 307 138 1415 88 0 0 chr1 231015647 231015818 -51177846 + AluSg/x SINE Alu 122 292 -20 229 172 35 0 chr1 231015893 231015951 -51177713 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 3448 175 34 0 chr1 231015966 231016623 -51177041 - L1MB7 LINE L1 -79 6105 5427 2587 73 0 0 chr1 231016669 231016972 -51176692 - AluY SINE Alu -8 303 1 471 346 115 29 chr1 231017008 231017138 -51176526 + L2 LINE L2 2148 2265 -1049 2394 105 0 0 chr1 231017138 231017443 -51176221 - AluSg SINE Alu -5 305 1 471 346 115 29 chr1 231017443 231017731 -51175933 + L2 LINE L2 2265 2602 -712 911 111 0 15 chr1 231017744 231017904 -51175760 - FLAM_C SINE Alu 0 133 1 2104 98 0 11 chr1 231018330 231018605 -51175059 + AluSq SINE Alu 40 311 -2 517 317 221 16 chr1 231018680 231018992 -51174672 + L3 LINE CR1 431 806 -771 2147 94 35 11 chr1 231019147 231019434 -51174230 + AluSx SINE Alu 1 294 -18 1974 145 14 0 chr1 231019462 231019751 -51173913 + AluJo SINE Alu 1 293 -19 702 229 22 45 chr1 231019751 231019974 -51173690 + L1MC5 LINE L1 7714 7931 -30 818 182 73 0 chr1 231020558 231020723 -51172941 - MER45A DNA AcHobo -1 177 1 1715 152 4 4 chr1 231022105 231022391 -51171273 - AluJb SINE Alu 0 313 28 744 164 0 0 chr1 231022688 231022810 -51170854 + FLAM_A SINE Alu 6 127 -15 1754 191 0 13 chr1 231022824 231023128 -51170536 + AluJb SINE Alu 1 300 -12 201 74 0 0 chr1 231023128 231023155 -51170509 + (GA)n Simple_repeat Simple_repeat 1 27 0 317 246 61 9 chr1 231023155 231023269 -51170395 + L1M4 LINE L1 3081 3200 -2946 2429 65 0 26 chr1 231023278 231023586 -51170078 + AluY SINE Alu 1 300 -11 202 245 0 20 chr1 231023586 231023625 -51170039 + GA-rich Low_complexity Low_complexity 10 49 0 1152 111 0 0 chr1 231023625 231023675 -51169989 + (GGAA)n Simple_repeat Simple_repeat 1 230 0 1152 111 0 0 chr1 231023675 231023855 -51169809 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 909 198 32 16 chr1 231023973 231024160 -51169504 + AluJo SINE Alu 122 311 -1 2129 126 13 3 chr1 231024176 231024478 -51169186 + AluSq SINE Alu 1 305 -8 275 246 25 85 chr1 231024501 231024619 -51169045 + MIR SINE MIR 105 215 -47 1954 142 3 43 chr1 231024932 231025257 -51168407 - AluJo SINE Alu 0 312 1 416 204 106 21 chr1 231025723 231025865 -51167799 + L1ME4a LINE L1 5729 5882 -239 465 150 0 11 chr1 231025978 231026221 -51167443 + AluJo SINE Alu 1 303 -9 2427 84 0 0 chr1 231026541 231026838 -51166826 + AluSc SINE Alu 13 309 0 639 227 54 54 chr1 231026990 231027112 -51166552 + MER105 DNA DNA 1 125 -79 1863 165 72 21 chr1 231027112 231027488 -51166176 + MSTD LTR MaLR 1 395 -1 639 227 54 54 chr1 231027488 231027568 -51166096 + MER105 DNA DNA 124 203 -1 2179 114 0 7 chr1 231027972 231028261 -51165403 - AluSx SINE Alu -25 287 1 1914 108 81 0 chr1 231028324 231028624 -51165040 - AluSx SINE Alu 0 322 2 682 351 144 38 chr1 231028961 231030496 -51163168 - L2 LINE L2 -1 3271 1899 2263 106 7 10 chr1 231030496 231030798 -51162866 + AluSx SINE Alu 1 301 -11 682 351 144 38 chr1 231030798 231030999 -51162665 - L2 LINE L2 -1373 1899 1721 898 184 6 0 chr1 231030999 231031157 -51162507 + FRAM SINE Alu 1 159 -7 682 351 144 38 chr1 231031157 231031316 -51162348 - L2 LINE L2 -1551 1721 1155 1883 153 48 0 chr1 231031713 231032007 -51161657 + AluJb SINE Alu 1 308 -4 205 315 79 8 chr1 231032013 231032140 -51161524 - MIR SINE MIR -2 260 125 1794 220 113 24 chr1 231032140 231032380 -51161284 + L1ME3A LINE L1 5592 5809 -361 2328 100 0 0 chr1 231032380 231032671 -51160993 + AluSq SINE Alu 6 296 -17 1794 220 113 24 chr1 231032671 231032775 -51160889 + L1ME3A LINE L1 5809 5902 -268 530 75 43 0 chr1 231032775 231032868 -51160796 + (TA)n Simple_repeat Simple_repeat 2 98 0 1794 220 113 24 chr1 231032868 231033054 -51160610 + L1ME3A LINE L1 5902 6170 0 281 338 21 56 chr1 231033101 231033243 -51160421 - MIR SINE MIR -125 137 1 1534 279 166 11 chr1 231033578 231034320 -51159344 + L2 LINE L2 1423 2279 -1035 600 383 114 42 chr1 231034316 231035638 -51158026 - L2 LINE L2 -573 2741 1325 * 227 302 213 20 chr1 231035683 231035885 -51157779 - MIR SINE MIR 0 262 22 685 143 137 37 chr1 231036164 231036342 -51157322 + L1M3 LINE L1 5623 5817 -357 406 66 0 8 chr1 231036347 231036411 -51157253 + L1MB4 LINE L1 5770 5832 -343 2170 126 0 3 chr1 231036575 231036877 -51156787 - AluSx SINE Alu -11 301 1 2358 78 0 47 chr1 231037303 231037624 -51156040 - AluSx SINE Alu -6 306 1 255 235 61 41 chr1 231037638 231037736 -51155928 - L2 LINE L2 0 3313 3214 256 298 0 21 chr1 231038019 231038113 -51155551 + L2 LINE L2 2971 3062 -210 2161 123 0 10 chr1 231038517 231038818 -51154846 - AluSx SINE Alu -14 298 1 188 305 51 0 chr1 231038993 231039052 -51154612 + L2 LINE L2 3172 3233 -39 243 320 13 26 chr1 231039179 231039257 -51154407 + MIR SINE MIR 3 79 -183 1085 148 6 11 chr1 231039281 231039457 -51154207 + AluSg/x SINE Alu 136 310 -2 1989 139 3 36 chr1 231039618 231039927 -51153737 + AluJb SINE Alu 1 299 -13 214 264 38 66 chr1 231040067 231040173 -51153491 + MIR SINE MIR 156 258 -4 380 309 217 18 chr1 231040289 231040506 -51153158 + MIR SINE MIR 3 262 0 686 127 45 52 chr1 231040658 231040792 -51152872 + FLAM_C SINE Alu 1 133 0 467 254 14 21 chr1 231042918 231043060 -51150604 - MIR SINE MIR -112 150 10 800 174 0 29 chr1 231043318 231043456 -51150208 - AluJo SINE Alu -178 134 1 251 236 0 0 chr1 231045117 231045172 -51148492 - L3b LINE CR1 -188 1395 1341 2429 103 3 0 chr1 231045695 231046006 -51147658 + AluSp SINE Alu 1 312 -1 203 286 33 44 chr1 231046227 231046318 -51147346 + MIR SINE MIR 39 128 -80 2266 103 0 7 chr1 231047460 231047769 -51145895 + AluSg SINE Alu 1 310 0 736 169 0 8 chr1 231048112 231048269 -51145395 + FLAM_C SINE Alu 5 160 0 903 141 35 114 chr1 231048400 231048517 -51145147 + MER96B DNA MER1_type? 3 128 -289 1227 97 0 0 chr1 231048517 231048693 -51144971 + (TA)n Simple_repeat Simple_repeat 2 177 0 2257 94 11 0 chr1 231048693 231048980 -51144684 - AluSp SINE Alu -21 292 3 903 141 35 114 chr1 231048980 231049116 -51144548 + MER96B DNA MER1_type? 126 237 -180 258 382 94 5 chr1 231049117 231049308 -51144356 - L3b LINE CR1 -73 1510 1303 277 387 0 6 chr1 231049697 231049870 -51143794 + GA-rich Low_complexity Low_complexity 5 176 0 456 275 114 0 chr1 231053597 231053746 -51139918 - MIR SINE MIR -33 229 64 243 268 16 41 chr1 231055129 231055252 -51138412 + CT-rich Low_complexity Low_complexity 4 123 0 304 309 89 30 chr1 231057087 231057160 -51136504 - MIR SINE MIR -38 224 157 1942 130 3 14 chr1 231057160 231057480 -51136184 - AluSx SINE Alu 0 317 1 304 309 89 30 chr1 231057480 231057573 -51136091 - MIR SINE MIR -105 157 47 21 36 0 0 chr1 231060105 231060133 -51133531 + AT_rich Low_complexity Low_complexity 1 28 0 384 322 0 0 chr1 231060162 231060280 -51133384 - MIR3 SINE MIR -88 120 3 418 279 0 62 chr1 231062220 231062382 -51131282 - MIR SINE MIR -65 143 45 225 83 0 0 chr1 231063004 231063040 -51130624 + (CAAAC)n Simple_repeat Simple_repeat 2 37 0 215 250 62 0 chr1 231063748 231063812 -51129852 - MIR SINE MIR -118 144 77 2101 94 38 0 chr1 231063892 231064179 -51129485 + AluSp SINE Alu 1 298 -15 940 244 50 12 chr1 231065811 231066053 -51127611 - MIR SINE MIR 0 262 12 263 315 63 0 chr1 231066031 231066142 -51127522 + MIR SINE MIR 22 139 -123 * 383 218 100 18 chr1 231067288 231067398 -51126266 - MIR SINE MIR -50 212 94 2271 101 0 7 chr1 231067692 231067988 -51125676 - AluSg SINE Alu -16 294 1 248 274 78 59 chr1 231068117 231068219 -51125445 - L3 LINE CR1 -106 1471 1368 265 302 16 16 chr1 231068759 231068885 -51124779 + MIR SINE MIR 71 196 -66 1822 133 139 6 chr1 231069089 231069412 -51124252 - MER47A DNA MER2_type 0 366 1 267 325 126 10 chr1 231069541 231069747 -51123917 - L3 LINE CR1 -218 1359 1130 723 191 0 22 chr1 231069938 231070074 -51123590 - FLAM_C SINE Alu 0 133 1 2261 116 0 0 chr1 231070091 231070383 -51123281 - AluSx SINE Alu -20 292 1 186 296 93 93 chr1 231071378 231071486 -51122178 + MIR SINE MIR 124 231 -31 2277 104 0 10 chr1 231072191 231072498 -51121166 - AluSq SINE Alu -9 304 1 234 0 0 0 chr1 231072626 231072652 -51121012 + (TG)n Simple_repeat Simple_repeat 1 26 0 1740 142 8 8 chr1 231072666 231072919 -51120745 - AluSx SINE Alu -59 253 1 2021 148 0 3 chr1 231074532 231074830 -51118834 - AluJo SINE Alu -15 297 1 237 83 0 0 chr1 231075251 231075287 -51118377 + (TCC)n Simple_repeat Simple_repeat 1 36 0 207 288 0 27 chr1 231075608 231075681 -51117983 + L2 LINE L2 3200 3270 -2 2421 83 3 0 chr1 231076369 231076669 -51116995 - AluSp SINE Alu -9 304 4 2401 95 3 7 chr1 231076671 231076977 -51116687 - AluSq SINE Alu -8 305 1 1529 146 63 12 chr1 231077501 231077784 -51115880 - AluJb SINE Alu 0 312 20 1891 117 78 0 chr1 231077904 231078185 -51115479 - AluSq SINE Alu -10 303 1 2051 111 29 41 chr1 231078446 231078761 -51114903 + AluSx SINE Alu 2 312 0 2210 117 7 0 chr1 231080866 231081166 -51112498 - AluSg SINE Alu -8 302 1 207 0 0 0 chr1 231081307 231081330 -51112334 + (CA)n Simple_repeat Simple_repeat 1 23 0 600 241 77 24 chr1 231082055 231082309 -51111355 + L1MC4a LINE L1 5645 5912 -209 479 217 136 66 chr1 231082441 231082713 -51110951 - L1ME4a LINE L1 -49 6072 5782 550 139 0 0 chr1 231084282 231084361 -51109303 - AluS SINE Alu -232 81 3 2203 128 3 6 chr1 231084665 231084978 -51108686 + AluSx SINE Alu 1 312 0 313 392 8 0 chr1 231086213 231086333 -51107331 + MIR3 SINE MIR 46 166 -42 2147 109 7 3 chr1 231086808 231087101 -51106563 - AluSx SINE Alu -18 294 1 2310 104 3 0 chr1 231087346 231087645 -51106019 - AluSp SINE Alu -13 300 1 2265 110 0 0 chr1 231087703 231087994 -51105670 - AluSx SINE Alu -21 291 1 2295 135 17 0 chr1 231088535 231088891 -51104773 - MER47A DNA MER2_type 0 366 5 630 234 95 0 chr1 231088932 231088975 -51104689 + Charlie1 DNA MER1_type 61 99 -2662 2324 116 0 0 chr1 231088975 231089285 -51104379 - AluSg SINE Alu 0 310 1 630 234 95 0 chr1 231089285 231089399 -51104265 + Charlie1 DNA MER1_type 99 233 -2528 227 260 31 0 chr1 231089389 231089485 -51104179 + Charlie1 DNA MER1_type 2620 2718 -43 * 2064 139 3 0 chr1 231090199 231090493 -51103171 - AluSx SINE Alu -17 295 1 243 0 0 0 chr1 231090963 231090990 -51102674 + (TA)n Simple_repeat Simple_repeat 2 28 0 1090 48 76 7 chr1 231090990 231091135 -51102529 - L1PA5 LINE L1 -15 6139 5985 2366 91 3 0 chr1 231092359 231092657 -51101007 - AluSp SINE Alu -14 299 1 1907 173 0 0 chr1 231093185 231093486 -51100178 + AluJo SINE Alu 2 302 -10 732 153 7 36 chr1 231093900 231094037 -51099627 + FLAM_C SINE Alu 1 133 0 221 271 0 34 chr1 231094726 231094785 -51098879 + L3 LINE CR1 1520 1576 -1 1861 146 9 41 chr1 231095998 231096135 -51097529 + AluJb SINE Alu 1 141 -171 2288 97 3 0 chr1 231096135 231096425 -51097239 + AluSc SINE Alu 1 291 -18 201 74 0 0 chr1 231096428 231096455 -51097209 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 1861 146 9 41 chr1 231096455 231096629 -51097035 + AluJb SINE Alu 143 306 -6 1554 167 38 35 chr1 231096638 231096925 -51096739 + AluJo SINE Alu 1 288 -24 1490 191 14 18 chr1 231098854 231099160 -51094504 + AluJo SINE Alu 1 305 0 261 283 0 38 chr1 231101181 231101287 -51092377 - MIR SINE MIR -61 201 100 950 209 84 0 chr1 231101955 231102146 -51091518 - MER3 DNA MER1_type -1 208 2 426 284 85 20 chr1 231102164 231102365 -51091299 - MIR SINE MIR -9 253 40 2172 116 3 0 chr1 231103202 231103496 -51090168 + AluSq SINE Alu 1 295 -18 2277 112 0 10 chr1 231103498 231103810 -51089854 + AluSg1 SINE Alu 1 309 0 990 176 0 6 chr1 231104053 231104212 -51089452 - FRAM SINE Alu -19 157 1 1244 185 91 3 chr1 231104339 231104636 -51089028 + MER33 DNA MER1_type 1 323 -1 254 275 92 69 chr1 231104720 231104851 -51088813 + MIR SINE MIR 20 153 -55 2132 104 4 0 chr1 231104857 231105136 -51088528 + AluSp SINE Alu 1 280 -33 2750 210 100 18 chr1 231105486 231106225 -51087439 - L1MC4a LINE L1 -4 7804 7005 259 234 0 16 chr1 231106228 231106292 -51087372 + MER21B LTR ERV1 5 67 -796 2089 134 10 0 chr1 231106327 231106619 -51087045 - AluSx SINE Alu -12 300 6 4094 147 14 31 chr1 231106729 231107436 -51086228 + MER21B-int LTR ERV1 3442 4136 -55 1903 178 16 3 chr1 231107519 231107833 -51085831 + MER21B LTR ERV1 1 318 -545 2346 134 31 83 chr1 231107836 231108282 -51085382 + MER21A LTR ERV1 490 912 -19 5802 210 53 46 chr1 231108293 231109800 -51083864 - L1MC4a LINE L1 -816 6992 5471 1584 181 68 0 chr1 231109800 231110081 -51083583 + AluJb SINE Alu 1 300 -12 5802 210 53 46 chr1 231110081 231110191 -51083473 - L1MC4a LINE L1 -2337 5471 5363 291 277 20 50 chr1 231110446 231110648 -51083016 - L1MC4a LINE L1 -1002 5144 4949 1120 99 0 0 chr1 231110673 231110825 -51082839 - AluY SINE Alu -4 307 156 1313 137 5 10 chr1 231110826 231111031 -51082633 + AluJb SINE Alu 84 287 -25 2464 81 0 0 chr1 231111041 231111339 -51082325 + AluSx SINE Alu 1 298 -14 2299 93 3 0 chr1 231112171 231112472 -51081192 - AluSp SINE Alu -11 302 10 1104 150 0 0 chr1 231113704 231113871 -51079793 + FRAM SINE Alu 1 160 -16 2295 63 0 35 chr1 231114118 231114434 -51079230 - AluY SINE Alu -6 305 1 23 33 0 0 chr1 231116081 231116111 -51077553 + AT_rich Low_complexity Low_complexity 1 30 0 1465 177 51 17 chr1 231116188 231116482 -51077182 + AluJo SINE Alu 1 304 -8 2290 100 0 0 chr1 231116723 231117034 -51076630 + AluSx SINE Alu 1 311 -1 1937 123 0 24 chr1 231117711 231118003 -51075661 + AluSx SINE Alu 11 295 -17 2287 71 3 0 chr1 231118059 231118384 -51075280 + AluSx SINE Alu 1 312 0 837 195 13 13 chr1 231119093 231119252 -51074412 + FRAM SINE Alu 1 159 -7 291 377 0 9 chr1 231121255 231121369 -51072295 - MIR SINE MIR -76 132 20 1922 127 0 7 chr1 231121922 231122222 -51071442 + AluJo SINE Alu 1 298 -14 771 177 0 14 chr1 231122231 231122372 -51071292 + FAM SINE Alu 1 45 -4 460 161 183 0 chr1 231122674 231122767 -51070897 - FLAM_A SINE Alu -32 110 1 26 30 0 0 chr1 231123435 231123468 -51070196 + AT_rich Low_complexity Low_complexity 1 33 0 2098 119 0 0 chr1 231124294 231124606 -51069058 + AluSx SINE Alu 1 312 0 1001 192 12 0 chr1 231125318 231125490 -51068174 - MER5A DNA MER1_type -15 174 1 279 54 0 0 chr1 231126861 231126898 -51066766 + (CA)n Simple_repeat Simple_repeat 2 38 0 426 20 0 0 chr1 231128701 231128752 -51064912 + (TG)n Simple_repeat Simple_repeat 2 52 0 191 357 0 0 chr1 231128754 231128810 -51064854 + L2 LINE L2 3216 3271 -1 180 256 0 0 chr1 231129421 231129507 -51064157 + A-rich Low_complexity Low_complexity 1 86 0 1196 171 0 92 chr1 231130495 231130799 -51062865 + AluJo SINE Alu 27 302 -10 531 278 140 21 chr1 231131433 231131709 -51061955 - L1MC/D LINE L1 -728 5631 5389 2273 67 0 10 chr1 231131709 231132007 -51061657 - AluSc SINE Alu -14 295 1 531 278 140 21 chr1 231132007 231132025 -51061639 - L1MC/D LINE L1 -970 5389 5375 1577 177 7 11 chr1 231132025 231132308 -51061356 - AluJb SINE Alu -30 282 1 531 278 140 21 chr1 231132308 231132416 -51061248 - L1MC/D LINE L1 -984 5375 5199 761 106 61 53 chr1 231132773 231132905 -51060759 - FLAM_C SINE Alu 0 143 11 1744 120 53 40 chr1 231133280 231133579 -51060085 + AluSx SINE Alu 1 303 -9 626 138 15 54 chr1 231133727 231133755 -51059909 - AluSp/q SINE Alu -6 307 279 624 152 56 0 chr1 231133755 231133880 -51059784 - L1MA8 LINE L1 -4 6287 6156 626 138 15 54 chr1 231133880 231133981 -51059683 - AluSp/q SINE Alu -34 279 183 2512 86 8 128 chr1 231134085 231134114 -51059550 - L1MA8 LINE L1 -136 6155 6124 2199 95 7 0 chr1 231134114 231134420 -51059244 + AluSp SINE Alu 1 308 -5 2512 86 8 128 chr1 231134420 231134766 -51058898 - L1MA8 LINE L1 -167 6124 5846 732 173 0 24 chr1 231134766 231134893 -51058771 - FLAM_A SINE Alu -9 124 1 2512 86 8 128 chr1 231134893 231134991 -51058673 - L1MA8 LINE L1 -445 5846 5738 2268 83 0 13 chr1 231135079 231135393 -51058271 - AluY SINE Alu -1 310 1 24 32 0 0 chr1 231135485 231135516 -51058148 + AT_rich Low_complexity Low_complexity 1 31 0 294 208 111 0 chr1 231135633 231135705 -51057959 - MIR3 SINE MIR -10 198 119 1551 158 46 3 chr1 231135767 231136051 -51057613 - AluJb SINE Alu -16 296 1 2096 96 0 7 chr1 231136060 231136375 -51057289 - AluY SINE Alu 0 313 1 207 0 0 0 chr1 231136552 231136575 -51057089 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 231 344 0 32 chr1 231139149 231139306 -51054358 + GA-rich Low_complexity Low_complexity 4 155 0 974 155 0 7 chr1 231140402 231140557 -51053107 + FRAM SINE Alu 1 153 -23 581 133 0 76 chr1 231142355 231142483 -51051181 + AluSc SINE Alu 184 303 0 277 24 48 0 chr1 231143073 231143115 -51050549 + (CA)n Simple_repeat Simple_repeat 1 44 0 367 304 120 51 chr1 231143424 231143582 -51050082 - MIR3 SINE MIR -20 188 20 448 219 137 34 chr1 231143751 231143865 -51049799 + MER103 DNA DNA 2 136 -30 2076 138 0 0 chr1 231143865 231144177 -51049487 + AluSx SINE Alu 1 312 0 448 219 137 34 chr1 231144177 231144208 -51049456 + MER103 DNA DNA 136 162 -4 1781 156 7 0 chr1 231144214 231144509 -51049155 - AluJb SINE Alu -15 297 1 186 273 0 0 chr1 231144752 231144796 -51048868 + L2 LINE L2 3014 3057 -256 207 0 0 0 chr1 231145547 231145570 -51048094 + (T)n Simple_repeat Simple_repeat 1 23 0 217 209 0 0 chr1 231146691 231146734 -51046930 - L2 LINE L2 -2 3311 3269 2207 97 7 7 chr1 231147342 231147651 -51046013 - AluSg SINE Alu -1 309 1 899 133 0 15 chr1 231147676 231147811 -51045853 - FLAM_C SINE Alu 0 133 1 1226 104 0 0 chr1 231147821 231147994 -51045670 - AluSq SINE Alu -7 306 134 2375 60 0 7 chr1 231147994 231148296 -51045368 - AluYa5 SINE Alu -11 300 1 565 230 30 7 chr1 231148383 231148518 -51045146 - L1MD2 LINE L1 -1 6358 6221 703 154 0 52 chr1 231148534 231148670 -51044994 + AluJo SINE Alu 6 134 -178 1847 133 7 23 chr1 231149022 231149331 -51044333 + AluJb SINE Alu 1 304 -8 1242 171 14 9 chr1 231149540 231149762 -51043902 - MER58A DNA MER1_type 0 224 2 1638 161 3 7 chr1 231149848 231150177 -51043487 + AluJo SINE Alu 1 328 0 2239 104 0 0 chr1 231150272 231150571 -51043093 - AluSq SINE Alu -14 299 1 222 37 0 0 chr1 231150687 231150714 -51042950 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 307 280 126 7 chr1 231150884 231150952 -51042712 - L1MC4 LINE L1 -59 7983 7924 180 0 0 0 chr1 231150952 231150972 -51042692 + (CA)n Simple_repeat Simple_repeat 1 20 0 307 280 126 7 chr1 231150972 231151046 -51042618 - L1MC4 LINE L1 -118 7924 7824 180 111 0 0 chr1 231151046 231151073 -51042591 + (T)n Simple_repeat Simple_repeat 1 27 0 232 175 127 16 chr1 231151082 231151145 -51042519 - L1MC4 LINE L1 -209 7833 7764 1899 135 7 0 chr1 231151147 231151428 -51042236 + AluSx SINE Alu 1 283 -29 583 291 69 51 chr1 231152689 231153078 -51040586 + L1MCc LINE L1 57 452 -5971 836 10 0 0 chr1 231153367 231153463 -51040201 + AluYa5/8 SINE Alu 202 297 -13 1611 124 47 4 chr1 231153473 231153731 -51039933 + AluSq SINE Alu 38 306 -7 315 285 28 35 chr1 231153938 231154102 -51039562 + L1MCc LINE L1 1381 1707 -4900 557 255 0 7 chr1 231154497 231154638 -51039026 + AluSg/x SINE Alu 172 311 -1 1284 154 132 11 chr1 231154697 231154970 -51038694 - AluJb SINE Alu -6 306 1 613 304 114 63 chr1 231154971 231155445 -51038219 - L2 LINE L2 -586 2728 2231 4443 171 39 40 chr1 231155452 231156702 -51036962 + L1MB7 LINE L1 4257 5506 -678 2108 105 3 16 chr1 231156702 231157008 -51036656 + AluSx SINE Alu 1 302 -10 4443 171 39 40 chr1 231157008 231157371 -51036293 + L1MB7 LINE L1 5506 5868 -316 1581 103 0 0 chr1 231157373 231157586 -51036078 + AluSg/x SINE Alu 93 305 -7 281 377 119 23 chr1 231157586 231158249 -51035415 - L2 LINE L2 -1370 1944 1218 2088 92 39 0 chr1 231158888 231159172 -51034492 + AluSq SINE Alu 1 295 -18 201 288 0 17 chr1 231164863 231164922 -51028742 + GA-rich Low_complexity Low_complexity 2 59 0 610 291 142 18 chr1 231165642 231165924 -51027740 - L3b LINE CR1 -97 1486 1170 2566 88 0 0 chr1 231167236 231167543 -51026121 + AluSx SINE Alu 1 307 -5 2438 74 0 7 chr1 231168263 231168591 -51025073 + AluY SINE Alu 1 311 0 768 168 8 8 chr1 231168631 231168762 -51024902 + FLAM_A SINE Alu 2 132 -1 2277 123 0 0 chr1 231168873 231169174 -51024490 + AluSq SINE Alu 1 301 -12 427 231 22 112 chr1 231169181 231169368 -51024296 + MIR SINE MIR 30 206 -56 191 190 35 69 chr1 231169953 231170011 -51023653 - MIR3 SINE MIR 0 208 153 398 279 19 65 chr1 231171765 231171919 -51021745 + MIR SINE MIR 65 211 -51 187 333 0 0 chr1 231173025 231173076 -51020588 + MIR SINE MIR 42 92 -116 2315 101 0 22 chr1 231173707 231174025 -51019639 - AluSx SINE Alu -1 311 1 214 317 58 10 chr1 231174026 231174130 -51019534 - L3b LINE CR1 -163 1420 1312 182 283 42 83 chr1 231174164 231174284 -51019380 - L3b LINE CR1 -364 1219 1105 292 103 35 17 chr1 231175362 231175409 -51018255 + CT-rich Low_complexity Low_complexity 2 52 -8 1780 132 62 0 chr1 231175409 231175666 -51017998 - AluSx SINE Alu -39 273 1 348 143 0 14 chr1 231175802 231175872 -51017792 + FLAM SINE Alu 64 132 -1 3624 220 79 93 chr1 231176021 231176675 -51016989 - HAL1 LINE L1 -637 1870 1208 2220 109 0 7 chr1 231176675 231176968 -51016696 - AluSc SINE Alu -15 294 4 3624 220 79 93 chr1 231176968 231176982 -51016682 - HAL1 LINE L1 -1299 1208 1195 656 105 158 0 chr1 231176982 231177096 -51016568 - FLAM_C SINE Alu 0 133 2 3624 220 79 93 chr1 231177096 231177272 -51016392 - HAL1 LINE L1 -1312 1195 1018 1790 180 7 0 chr1 231177272 231177555 -51016109 - AluJo SINE Alu -25 287 3 3624 220 79 93 chr1 231177555 231178538 -51015126 - HAL1 LINE L1 -1489 1018 68 884 139 0 0 chr1 231178700 231178822 -51014842 - FLAM_C SINE Alu -9 124 3 252 307 69 10 chr1 231179361 231179462 -51014202 + L3b LINE CR1 1265 1371 -212 770 164 0 0 chr1 231179983 231180099 -51013565 + FLAM_C SINE Alu 2 117 -26 380 181 14 56 chr1 231180159 231180231 -51013433 + MIR SINE MIR 3 71 -191 2633 57 0 0 chr1 231180281 231180579 -51013085 - AluY SINE Alu -13 298 1 195 344 78 74 chr1 231181061 231181317 -51012347 + L2 LINE L2 3016 3272 0 867 287 75 3 chr1 231181459 231181793 -51011871 - L1MCc LINE L1 -4900 1523 1166 1922 102 47 0 chr1 231181808 231182064 -51011600 - AluSq SINE Alu -8 305 38 910 10 0 0 chr1 231182074 231182174 -51011490 - AluYa5/8 SINE Alu -9 301 202 531 298 70 47 chr1 231182469 231182852 -51010812 - L1MCc LINE L1 -5975 448 57 365 195 0 13 chr1 231184516 231184593 -51009071 - MER116 DNA Mariner 0 80 5 2031 166 0 0 chr1 231184673 231184975 -51008689 - AluJb SINE Alu -7 305 4 2352 107 0 13 chr1 231184984 231185292 -51008372 - AluSq SINE Alu -9 304 1 984 145 111 21 chr1 231185634 231185853 -51007811 + MER33 DNA MER1_type 1 244 -2341 2422 104 3 0 chr1 231185853 231186162 -51007502 - AluSg SINE Alu 0 310 1 984 145 111 21 chr1 231186162 231186192 -51007472 + MER33 DNA MER1_type 244 270 -54 363 253 48 54 chr1 231186380 231186546 -51007118 - MER5B DNA MER1_type -13 165 1 367 277 36 0 chr1 231186546 231186643 -51007021 - MIR3 SINE MIR -48 160 59 406 204 51 88 chr1 231186900 231187037 -51006627 - L2 LINE L2 -1 3312 3181 2262 107 30 0 chr1 231187478 231187777 -51005887 - AluSx SINE Alu -4 308 1 205 298 8 66 chr1 231187832 231187953 -51005711 + MIR SINE MIR 86 199 -63 349 288 91 61 chr1 231188692 231188890 -51004774 + MIR SINE MIR 56 259 -3 511 266 161 18 chr1 231188965 231189183 -51004481 - MIR SINE MIR -2 260 12 2098 116 7 0 chr1 231189423 231189699 -51003965 + AluSg SINE Alu 1 278 -32 302 0 0 26 chr1 231189701 231189740 -51003924 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 294 314 77 60 chr1 231189740 231189984 -51003680 + L1ME4a LINE L1 5640 5895 -226 2080 104 7 0 chr1 231189984 231190253 -51003411 + AluSg SINE Alu 1 271 -39 294 314 77 60 chr1 231190253 231190425 -51003239 + L1ME4a LINE L1 5895 6063 -58 200 196 39 0 chr1 231190447 231190498 -51003166 + A-rich Low_complexity Low_complexity 5 57 0 564 115 0 0 chr1 231190506 231190610 -51003054 + (TG)n Simple_repeat Simple_repeat 1 104 0 302 246 32 63 chr1 231190738 231190864 -51002800 + L2 LINE L2 2917 3038 -234 461 264 18 0 chr1 231191337 231191447 -51002217 + MER81 DNA DNA 1 112 -2 735 232 21 83 chr1 231191986 231192179 -51001485 + MIR SINE MIR 16 193 -69 1636 177 57 14 chr1 231192179 231192461 -51001203 + AluJb SINE Alu 1 294 -18 735 232 21 83 chr1 231192461 231192508 -51001156 + MIR SINE MIR 193 241 -21 310 277 99 103 chr1 231192525 231192767 -51000897 - L2 LINE L2 -20 3252 3012 2302 86 9 16 chr1 231193803 231194118 -50999546 + AluSq SINE Alu 1 313 0 313 271 94 0 chr1 231194631 231194727 -50998937 + L2 LINE L2 3161 3265 -7 2082 112 0 3 chr1 231194770 231195082 -50998582 - AluSx SINE Alu 0 311 1 2359 73 20 7 chr1 231195174 231195476 -50998188 - AluY SINE Alu -5 306 1 232 179 0 119 chr1 231195566 231195633 -50998031 - MER117 DNA MER1_type -26 171 113 2019 131 7 13 chr1 231196157 231196463 -50997201 - AluSx SINE Alu -8 304 1 1758 148 21 31 chr1 231198380 231198670 -50994994 + AluJb SINE Alu 1 287 -25 2129 124 0 0 chr1 231198680 231198986 -50994678 + AluSx SINE Alu 1 306 0 393 22 0 0 chr1 231198988 231199034 -50994630 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr1 231200613 231200643 -50993021 + GC_rich Low_complexity Low_complexity 1 30 0 506 306 77 30 chr1 231201389 231201624 -50992040 + MIR SINE MIR 7 252 -10 252 0 0 0 chr1 231202000 231202028 -50991636 + (CA)n Simple_repeat Simple_repeat 2 29 0 2332 95 0 3 chr1 231202342 231202647 -50991017 - AluSp SINE Alu -1 312 9 315 333 0 33 chr1 231202781 231202901 -50990763 - MIR SINE MIR -98 164 49 2357 103 0 0 chr1 231203539 231203840 -50989824 - AluSg SINE Alu -5 305 5 2362 93 0 3 chr1 231204235 231204536 -50989128 - AluSq SINE Alu -12 301 2 1752 132 7 14 chr1 231204539 231204827 -50988837 - LTR48B LTR ERV1 -358 286 1 392 244 17 52 chr1 231204828 231204943 -50988721 + MIR SINE MIR 127 237 -25 244 275 160 15 chr1 231204958 231205089 -50988575 + MIR SINE MIR 103 252 -10 308 292 100 8 chr1 231207171 231207291 -50986373 + MIR SINE MIR 20 150 -112 302 103 0 118 chr1 231207424 231207453 -50986211 + MER33 DNA MER1_type 304 322 -2302 2396 85 7 0 chr1 231207453 231207759 -50985905 + AluSc SINE Alu 1 308 -1 302 103 0 118 chr1 231207759 231207797 -50985867 + MER33 DNA MER1_type 322 363 0 2129 136 7 3 chr1 231208876 231209185 -50984479 + AluSx SINE Alu 1 310 -2 1566 214 46 41 chr1 231209946 231210334 -50983330 + MLT1B LTR MaLR 1 390 0 1954 158 10 10 chr1 231211887 231212197 -50981467 - MER58B DNA MER1_type -28 313 4 1621 169 3 31 chr1 231212380 231212700 -50980964 - AluJo SINE Alu -1 311 1 216 220 20 0 chr1 231212721 231212771 -50980893 + A-rich Low_complexity Low_complexity 3 53 0 27 81 0 0 chr1 231214166 231214228 -50979436 + AT_rich Low_complexity Low_complexity 1 62 0 957 113 0 7 chr1 231214245 231214387 -50979277 - AluJb SINE Alu -171 141 1 409 262 53 65 chr1 231215475 231215738 -50977926 - MIR SINE MIR 0 262 3 1194 175 105 49 chr1 231217029 231217315 -50976349 + AluJo SINE Alu 1 302 0 904 9 35 0 chr1 231217675 231217790 -50975874 + (GAAA)n Simple_repeat Simple_repeat 4 122 0 2231 99 0 7 chr1 231218458 231218760 -50974904 - AluSc SINE Alu -9 300 1 276 149 0 0 chr1 231219093 231219140 -50974524 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1007 166 101 5 chr1 231219140 231219339 -50974325 - AluJb SINE Alu -7 305 88 458 311 104 15 chr1 231219988 231220258 -50973406 + L2 LINE L2 1793 2086 -1228 288 180 0 0 chr1 231220403 231220453 -50973211 + L2 LINE L2 3263 3312 -1 212 341 47 0 chr1 231224275 231224360 -50969304 - L3b LINE CR1 -88 1495 1407 1063 171 13 39 chr1 231224652 231224886 -50968778 - AluJo SINE Alu 0 312 85 2157 108 0 0 chr1 231225424 231225719 -50967945 - AluSx SINE Alu -17 295 1 1797 134 34 10 chr1 231227568 231227866 -50965798 - AluJb SINE Alu -7 305 1 222 343 0 14 chr1 231228078 231228151 -50965513 + L2 LINE L2 3231 3302 -11 1336 196 19 0 chr1 231228462 231228732 -50964932 + AluJb SINE Alu 6 280 -32 203 0 0 36 chr1 231228733 231228761 -50964903 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 275 316 74 47 chr1 231228910 231229100 -50964564 + MIR SINE MIR 37 231 -31 180 354 62 39 chr1 231229840 231230018 -50963646 + L2 LINE L2 2976 3157 -115 * 378 297 59 59 chr1 231230002 231230224 -50963440 + L2 LINE L2 3081 3302 -11 414 94 0 0 chr1 231230224 231230288 -50963376 + (TAAA)n Simple_repeat Simple_repeat 3 66 0 232 267 133 0 chr1 231230305 231230380 -50963284 + L2 LINE L2 3228 3312 -1 2029 103 31 0 chr1 231230406 231230696 -50962968 + AluSp SINE Alu 1 299 -14 448 279 110 23 chr1 231230999 231231218 -50962446 - MIR SINE MIR -12 250 13 827 236 65 10 chr1 231231378 231231577 -50962087 + MIR SINE MIR 5 214 -48 182 306 0 0 chr1 231235897 231235946 -50957718 + MIR3 SINE MIR 108 156 -52 200 265 88 127 chr1 231238847 231239028 -50954636 - MIR SINE MIR -46 216 43 551 205 17 8 chr1 231239197 231239314 -50954350 - MIR3 SINE MIR -3 205 88 222 62 0 0 chr1 231239862 231239894 -50953770 + (TG)n Simple_repeat Simple_repeat 2 33 0 1578 176 0 3 chr1 231240055 231240477 -50953187 - AluJo SINE Alu 0 421 1 1317 257 130 7 chr1 231240504 231241065 -50952599 + L2 LINE L2 2553 3187 -126 26 0 0 0 chr1 231241073 231241099 -50952565 + AT_rich Low_complexity Low_complexity 1 26 0 714 82 71 0 chr1 231241099 231241197 -50952467 - U6 snRNA snRNA -2 105 1 2274 94 0 0 chr1 231241206 231241504 -50952160 - AluY SINE Alu -13 298 1 2203 112 0 0 chr1 231241510 231241814 -50951850 - AluSx SINE Alu -8 304 1 222 287 128 0 chr1 231241827 231241921 -50951743 + L2 LINE L2 3206 3311 -2 237 320 117 23 chr1 231241940 231242068 -50951596 - MIR3 SINE MIR -65 143 4 877 116 0 62 chr1 231242124 231242270 -50951394 + AluJb SINE Alu 1 137 -175 927 176 6 0 chr1 231242334 231242493 -50951171 + AluJb SINE Alu 142 301 -11 241 280 53 27 chr1 231244023 231244098 -50949566 - L2 LINE L2 -52 3220 3144 373 327 72 0 chr1 231244222 231244375 -50949289 + MIR SINE MIR 36 199 -63 2367 66 7 0 chr1 231244675 231244978 -50948686 - AluY SINE Alu -6 305 1 1756 90 17 0 chr1 231245006 231245240 -50948424 - AluSq SINE Alu -75 238 1 188 232 0 54 chr1 231245343 231245399 -50948265 - MIR SINE MIR -138 70 18 1610 159 0 91 chr1 231245838 231245978 -50947686 + AluJo SINE Alu 1 152 -160 2135 118 0 6 chr1 231245978 231246291 -50947373 - AluSq SINE Alu 0 313 3 1610 159 0 91 chr1 231246291 231246489 -50947175 + AluJo SINE Alu 152 308 -4 1440 254 58 0 chr1 231246676 231247023 -50946641 + LTR16C LTR ERVL 125 491 0 697 300 28 36 chr1 231247420 231247673 -50945991 - MIR SINE MIR -6 256 6 2025 119 6 19 chr1 231247930 231248241 -50945423 - AluSq SINE Alu -6 307 1 401 251 128 31 chr1 231248274 231248459 -50945205 - MIR SINE MIR -42 220 21 31 0 0 0 chr1 231248612 231248643 -50945021 + AT_rich Low_complexity Low_complexity 1 31 0 1663 151 18 7 chr1 231248644 231248929 -50944735 - AluJo SINE Alu -24 288 1 890 153 0 65 chr1 231248941 231249111 -50944553 - FRAM SINE Alu -16 160 2 211 178 0 44 chr1 231249998 231250043 -50943621 + MER91C DNA MER1_type 61 103 -37 1070 273 110 42 chr1 231250475 231250947 -50942717 + L3 LINE CR1 1046 1549 -28 209 310 130 10 chr1 231250937 231251037 -50942627 - MER5B DNA MER1_type -27 151 40 * 4708 155 37 32 chr1 231251040 231251479 -50942185 + L1MB4 LINE L1 5025 5460 -720 1954 116 3 20 chr1 231251479 231251780 -50941884 - AluSx SINE Alu -16 296 1 4708 155 37 32 chr1 231251780 231251919 -50941745 + L1MB4 LINE L1 5460 5597 -583 248 0 31 0 chr1 231251919 231251951 -50941713 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 4708 155 37 32 chr1 231251951 231252520 -50941144 + L1MB4 LINE L1 5597 6174 -6 867 226 39 25 chr1 231253815 231254019 -50939645 - MIR SINE MIR 0 262 56 457 323 115 9 chr1 231256446 231256663 -50937001 + MIR SINE MIR 9 248 -14 1877 155 3 0 chr1 231257703 231258007 -50935657 - AluJb SINE Alu -7 305 1 238 247 14 55 chr1 231258156 231258229 -50935435 + L2 LINE L2 3177 3246 -26 238 265 145 0 chr1 231258884 231258967 -50934697 + L2 LINE L2 3148 3242 -30 2244 99 14 0 chr1 231259144 231259438 -50934226 + AluSx SINE Alu 1 298 -14 1600 79 0 0 chr1 231260393 231260583 -50933081 + AluSx SINE Alu 1 190 -122 24 32 0 0 chr1 231260607 231260638 -50933026 + AT_rich Low_complexity Low_complexity 1 31 0 251 281 45 11 chr1 231261319 231261408 -50932256 - MIR3 SINE MIR -41 167 76 932 224 25 0 chr1 231262173 231262374 -50931290 + MER63A DNA MER1_type 1 206 -4 283 308 50 33 chr1 231262740 231262860 -50930804 - L2 LINE L2 -1 3312 3191 629 263 29 6 chr1 231263761 231263932 -50929732 - MIR SINE MIR -44 218 44 191 333 0 0 chr1 231263963 231264017 -50929647 + L2 LINE L2 3195 3248 -24 1849 150 17 20 chr1 231264024 231264317 -50929347 + AluJo SINE Alu 9 300 -12 191 347 74 0 chr1 231264664 231264785 -50928879 - MIR3 SINE MIR -31 177 48 1890 156 17 3 chr1 231265442 231265737 -50927927 - AluJb SINE Alu -13 299 1 208 298 0 0 chr1 231265927 231265974 -50927690 - MER91 DNA MER1_type -7 183 137 276 30 0 0 chr1 231266130 231266163 -50927501 + (TG)n Simple_repeat Simple_repeat 1 33 0 669 254 81 21 chr1 231267039 231267275 -50926389 + MIR SINE MIR 12 261 -1 278 26 26 0 chr1 231268310 231268349 -50925315 + (CA)n Simple_repeat Simple_repeat 2 41 0 712 172 0 0 chr1 231269490 231269612 -50924052 + FLAM_C SINE Alu 6 127 -16 517 254 24 0 chr1 231269650 231269776 -50923888 + MIR3 SINE MIR 79 207 -1 234 270 0 27 chr1 231269815 231269889 -50923775 - MER5A DNA MER1_type -40 149 78 918 242 10 5 chr1 231271636 231271834 -50921830 - MIR SINE MIR -33 229 31 480 35 0 0 chr1 231271871 231271929 -50921735 + (GA)n Simple_repeat Simple_repeat 1 58 0 4220 157 18 16 chr1 231271929 231271970 -50921694 - L1MB7 LINE L1 -30 6154 6115 1896 119 7 14 chr1 231271970 231272247 -50921417 + AluSq SINE Alu 38 312 -1 4220 157 18 16 chr1 231272247 231272969 -50920695 - L1MB7 LINE L1 -69 6115 5389 607 157 64 50 chr1 231272969 231273109 -50920555 - MER3 DNA MER1_type -41 168 27 10217 42 5 0 chr1 231273176 231273562 -50920102 - L1PA6 LINE L1 0 6154 5771 2649 58 3 0 chr1 231273562 231273871 -50919793 - AluY SINE Alu 0 311 2 10217 42 5 0 chr1 231273871 231275578 -50918086 - L1PA6 LINE L1 -383 5771 4074 193 276 50 72 chr1 231276352 231276533 -50917131 - L2 LINE L2 -213 3059 2883 345 187 58 137 chr1 231276535 231276674 -50916990 + MIR SINE MIR 28 155 -107 368 265 136 15 chr1 231276950 231277082 -50916582 - MIR3 SINE MIR 0 208 61 190 269 0 0 chr1 231277472 231277524 -50916140 + L3b LINE CR1 1331 1382 -201 427 257 169 6 chr1 231277689 231277872 -50915792 - MIR SINE MIR -30 232 20 214 203 31 31 chr1 231278365 231278429 -50915235 + CT-rich Low_complexity Low_complexity 5 68 0 192 339 113 9 chr1 231278508 231278623 -50915041 + MIR3 SINE MIR 9 135 -73 307 333 159 0 chr1 231279646 231279853 -50913811 - MIR SINE MIR -21 241 2 307 360 40 0 chr1 231281379 231281479 -50912185 + L2 LINE L2 3169 3272 0 352 323 31 0 chr1 231282698 231282828 -50910836 + MER117 DNA MER1_type 1 134 -63 256 349 16 16 chr1 231282964 231283090 -50910574 + L2 LINE L2 2881 3006 -266 249 360 23 0 chr1 231283099 231283185 -50910479 - L2 LINE L2 -1 3271 3184 1172 147 32 0 chr1 231283317 231283507 -50910157 + MER20 DNA MER1_type 2 197 -22 792 168 7 14 chr1 231284860 231285003 -50908661 - LTR47B LTR ERVL -89 354 213 421 305 71 44 chr1 231286902 231287128 -50906536 + MIR SINE MIR 31 262 0 197 218 333 0 chr1 231288783 231288861 -50904803 + MIR SINE MIR 41 144 -64 1561 117 140 15 chr1 231289341 231289606 -50904058 - AluSg1 SINE Alu -11 298 1 1367 97 6 0 chr1 231289623 231289798 -50903866 - AluY SINE Alu -14 297 122 2485 70 3 3 chr1 231289826 231290125 -50903539 + AluSq SINE Alu 1 299 -14 4115 172 121 87 chr1 231290133 231290645 -50903019 + L1MC3 LINE L1 6113 6607 365 203 0 37 0 chr1 231290645 231290672 -50902992 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 4115 172 121 87 chr1 231290672 231290713 -50902951 + L1MC3 LINE L1 6607 6645 403 232 241 152 0 chr1 231290713 231290792 -50902872 + MLT1F1 LTR MaLR 35 125 -442 4115 172 121 87 chr1 231290792 231290916 -50902748 + L1MC3 LINE L1 6645 5764 -478 1748 137 11 88 chr1 231290916 231291281 -50902383 + MER1B DNA MER1_type 1 337 0 4115 172 121 87 chr1 231291281 231291778 -50901886 + L1MC3 LINE L1 5763 6242 0 1023 226 0 34 chr1 231291816 231292055 -50901609 - MER8 DNA MER2_type 0 239 9 2238 105 3 32 chr1 231292292 231292464 -50901200 - AluSx SINE Alu -7 305 145 2377 105 0 3 chr1 231292464 231292768 -50900896 - AluSx SINE Alu -9 303 1 2238 105 3 32 chr1 231292768 231292909 -50900755 - AluSx SINE Alu -167 145 1 205 287 67 40 chr1 231292920 231293070 -50900594 - L2 LINE L2 -260 3012 2859 464 274 33 7 chr1 231293126 231293279 -50900385 - MER103 DNA DNA -2 164 8 225 298 227 12 chr1 231293449 231293691 -50899973 - L2 LINE L2 -560 2754 2461 650 139 51 51 chr1 231293854 231293882 -50899782 + L1MC3 LINE L1 6936 6963 -822 2172 141 62 45 chr1 231293882 231294064 -50899600 + MSTB LTR MaLR 1 178 -248 2465 78 13 0 chr1 231294064 231294373 -50899291 - AluSp SINE Alu 0 313 1 2172 141 62 45 chr1 231294373 231294609 -50899055 + MSTB LTR MaLR 178 426 0 650 139 51 51 chr1 231294609 231294738 -50898926 + L1MC3 LINE L1 6962 7093 -692 598 259 56 16 chr1 231294822 231295014 -50898650 + MIR SINE MIR 13 214 -48 728 295 19 5 chr1 231296048 231296255 -50897409 + MIR SINE MIR 35 244 -18 1703 192 19 7 chr1 231296671 231296978 -50896686 + AluSx SINE Alu 1 311 -1 2293 125 3 0 chr1 231297328 231297633 -50896031 - AluSx SINE Alu -6 306 1 1962 183 54 12 chr1 231299414 231299551 -50894113 + MSTB LTR MaLR 1 131 -295 2071 121 27 10 chr1 231299551 231299848 -50893816 - AluSx SINE Alu -10 302 1 1962 183 54 12 chr1 231299848 231300119 -50893545 + MSTB LTR MaLR 131 426 0 736 255 0 32 chr1 231301953 231302141 -50891523 + MIR SINE MIR 64 245 -17 562 217 62 74 chr1 231302226 231302470 -50891194 - MER112 DNA MER1_type -12 248 8 366 244 0 82 chr1 231302967 231303102 -50890562 - MIR SINE MIR -56 206 83 244 242 4 39 chr1 231303675 231303927 -50889737 + (CCA)n Simple_repeat Simple_repeat 1 243 0 309 227 15 15 chr1 231303934 231304066 -50889598 + (CACCAT)n Simple_repeat Simple_repeat 4 135 0 2384 67 40 7 chr1 231304190 231304490 -50889174 - AluY SINE Alu -1 310 1 23 54 0 0 chr1 231304600 231304637 -50889027 + AT_rich Low_complexity Low_complexity 1 37 0 481 317 160 21 chr1 231304836 231305491 -50888173 + L2 LINE L2 2545 3297 -16 428 230 118 50 chr1 231307030 231307191 -50886473 + MIR3 SINE MIR 19 190 -18 436 244 43 9 chr1 231307401 231307516 -50886148 + MIR3 SINE MIR 86 204 -4 263 277 0 30 chr1 231308050 231308151 -50885513 - L3b LINE CR1 -208 1375 1278 203 250 21 0 chr1 231309854 231309902 -50883762 + L2 LINE L2 3179 3227 -86 843 259 15 46 chr1 231310041 231310240 -50883424 - MIR SINE MIR -1 261 70 1579 106 4 4 chr1 231310240 231310466 -50883198 - AluSg/x SINE Alu -10 302 77 843 259 15 46 chr1 231310466 231310528 -50883136 - MIR SINE MIR -192 70 8 309 321 172 10 chr1 231311895 231312104 -50881560 - MIR SINE MIR 0 262 20 1106 181 66 12 chr1 231312492 231312735 -50880929 + MIR SINE MIR 6 261 -1 341 293 187 0 chr1 231312902 231313052 -50880612 - MIR SINE MIR -29 233 56 185 338 59 44 chr1 231313445 231313581 -50880083 + MIR SINE MIR 2 139 -123 382 193 48 0 chr1 231313853 231313936 -50879728 + MIR SINE MIR 176 262 0 1761 180 0 13 chr1 231314951 231315267 -50878397 - AluJo SINE Alu 0 312 1 331 225 95 154 chr1 231316481 231316571 -50877093 + MIR SINE MIR 33 110 -152 1830 139 0 4 chr1 231316571 231316851 -50876813 - AluJb SINE Alu -33 279 1 331 225 95 154 chr1 231316851 231316929 -50876735 + MIR SINE MIR 110 191 -71 515 295 101 22 chr1 231317120 231317388 -50876276 + L3 LINE CR1 1216 1504 -73 473 343 106 25 chr1 231319512 231319879 -50873785 + L3 LINE CR1 1174 1570 -7 2341 149 11 0 chr1 231321439 231321801 -50871863 + MER47A DNA MER2_type 1 366 0 217 200 0 0 chr1 231321924 231321964 -50871700 - MIR SINE MIR -60 148 109 204 254 15 15 chr1 231323145 231323212 -50870452 + CT-rich Low_complexity Low_complexity 1 67 0 468 0 0 0 chr1 231323440 231323492 -50870172 + (CA)n Simple_repeat Simple_repeat 2 53 0 198 0 0 0 chr1 231325157 231325179 -50868485 + (CGGGG)n Simple_repeat Simple_repeat 3 24 0 263 219 17 42 chr1 231325781 231325900 -50867764 + (CCG)n Simple_repeat Simple_repeat 3 118 0 256 121 0 61 chr1 231325992 231326058 -50867606 + (AGGGGG)n Simple_repeat Simple_repeat 2 63 0 184 241 25 0 chr1 231326041 231326120 -50867544 + GA-rich Low_complexity Low_complexity 2 82 0 * 219 273 148 21 chr1 231327024 231327169 -50866495 + MIR3 SINE MIR 3 170 -78 209 56 0 28 chr1 231329057 231329093 -50864571 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4160 28 0 0 chr1 231329093 231329594 -50864070 - L1PA4 LINE L1 -24 6131 5631 1732 153 76 3 chr1 231330921 231331209 -50862455 + AluSx SINE Alu 1 309 -3 756 164 13 38 chr1 231331209 231331526 -50862138 + GA-rich Low_complexity Low_complexity 1 309 0 597 170 29 23 chr1 231331540 231331560 -50862104 + GA-rich Low_complexity Low_complexity 3 21 -153 2238 83 13 16 chr1 231331560 231331872 -50861792 + AluY SINE Alu 1 311 0 597 170 29 23 chr1 231331872 231332022 -50861642 + GA-rich Low_complexity Low_complexity 21 174 0 277 149 0 21 chr1 231332023 231332070 -50861594 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 975 120 0 33 chr1 231332072 231332144 -50861520 + (GAAA)n Simple_repeat Simple_repeat 3 76 -104 1843 78 100 0 chr1 231332144 231332249 -50861415 + AluY SINE Alu 1 94 -217 207 0 0 0 chr1 231332249 231332272 -50861392 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1843 78 100 0 chr1 231332272 231332437 -50861227 + AluY SINE Alu 94 298 -13 975 120 0 33 chr1 231332437 231332548 -50861116 + (GAAA)n Simple_repeat Simple_repeat 76 180 0 533 225 12 12 chr1 231332551 231332720 -50860944 + GA-rich Low_complexity Low_complexity 1 169 0 1362 246 88 3 chr1 231333196 231333582 -50860082 - L2 LINE L2 -541 2773 2355 209 295 16 0 chr1 231333752 231333813 -50859851 + L2 LINE L2 3246 3307 -6 232 250 62 82 chr1 231335423 231335631 -50858033 + L2 LINE L2 2856 3059 -213 369 275 198 10 chr1 231335811 231336018 -50857646 - MIR SINE MIR -11 251 6 186 333 0 26 chr1 231337891 231337969 -50855695 - L3b LINE CR1 -186 1397 1322 275 152 0 91 chr1 231339133 231339200 -50854464 + MER91B DNA MER1_type 1 58 -132 282 350 0 10 chr1 231339207 231339310 -50854354 + L2 LINE L2 3164 3265 -7 2088 107 0 24 chr1 231339310 231339632 -50854032 + AluY SINE Alu 1 315 0 594 171 137 27 chr1 231340214 231340360 -50853304 + MIR SINE MIR 5 166 -96 870 288 8 12 chr1 231340366 231340606 -50853058 - MIR SINE MIR 0 262 24 254 244 231 0 chr1 231340597 231340675 -50852989 + MIR SINE MIR 161 256 -6 * 680 263 65 17 chr1 231341183 231341415 -50852249 + MIR SINE MIR 20 262 0 451 329 30 6 chr1 231341441 231341608 -50852056 + MIR3 SINE MIR 36 206 -2 251 185 62 31 chr1 231342696 231342761 -50850903 - L2 LINE L2 0 3272 3206 344 278 78 17 chr1 231343108 231343223 -50850441 + L2 LINE L2 3150 3271 -1 340 294 11 11 chr1 231346159 231346251 -50847413 + MIR SINE MIR 42 133 -75 1868 174 7 0 chr1 231346492 231346796 -50846868 - AluJb SINE Alu -6 306 1 199 323 0 0 chr1 231346988 231347053 -50846611 + MIR SINE MIR 183 247 -15 2133 114 0 16 chr1 231347080 231347387 -50846277 + AluSx SINE Alu 4 305 -7 831 197 5 48 chr1 231347391 231347579 -50846085 + FRAM SINE Alu 1 175 -1 1348 305 59 13 chr1 231349208 231349733 -50843931 - L3 LINE CR1 -120 1457 909 29 0 0 0 chr1 231349972 231350001 -50843663 + AT_rich Low_complexity Low_complexity 1 29 0 2434 65 0 10 chr1 231350010 231350318 -50843346 + AluY SINE Alu 2 306 -5 630 299 44 67 chr1 231352767 231353023 -50840641 + L1ME LINE L1 4976 5223 -923 2339 84 13 0 chr1 231353023 231353331 -50840333 + AluSq SINE Alu 1 312 -1 630 299 44 67 chr1 231353331 231353435 -50840229 + L1ME LINE L1 5223 5328 -818 1576 127 57 57 chr1 231353439 231353739 -50839925 + AluJb SINE Alu 5 304 -8 323 317 41 41 chr1 231353740 231353886 -50839778 + L1ME LINE L1 5368 5513 -608 2117 119 0 31 chr1 231353886 231354206 -50839458 + AluSx SINE Alu 1 310 -2 323 317 41 41 chr1 231354206 231354305 -50839359 + L1ME LINE L1 5512 5695 -426 250 246 145 0 chr1 231355083 231355152 -50838512 + MIR SINE MIR 68 146 -116 492 235 30 95 chr1 231355845 231356045 -50837619 - MIR SINE MIR -62 200 14 1646 177 46 18 chr1 231356920 231357217 -50836447 - AluJo SINE Alu -11 301 1 243 61 0 0 chr1 231357377 231357410 -50836254 + (TG)n Simple_repeat Simple_repeat 1 33 0 357 43 0 0 chr1 231357412 231357459 -50836205 + (GA)n Simple_repeat Simple_repeat 2 48 0 326 259 126 52 chr1 231357685 231357820 -50835844 - L2 LINE L2 0 3272 3128 2480 99 3 0 chr1 231357871 231358183 -50835481 + AluSp SINE Alu 1 313 0 916 233 49 8 chr1 231358377 231358622 -50835042 + MIR SINE MIR 5 259 -3 557 275 121 5 chr1 231358879 231359086 -50834578 + MIR SINE MIR 20 250 -12 2268 132 0 0 chr1 231359095 231359405 -50834259 + AluSg SINE Alu 1 310 0 893 213 62 19 chr1 231359701 231359912 -50833752 - MIR SINE MIR -24 238 19 579 269 47 0 chr1 231360635 231360784 -50832880 + MIR SINE MIR 40 195 -67 2140 106 4 0 chr1 231360802 231361077 -50832587 - AluSx SINE Alu -36 276 1 189 400 69 8 chr1 231361423 231361553 -50832111 + L3b LINE CR1 1407 1544 -39 385 242 13 3 chr1 231361793 231361876 -50831788 + (CA)n Simple_repeat Simple_repeat 1 82 -899 1757 175 30 30 chr1 231361876 231362178 -50831486 + MLT1A1 LTR MaLR 1 305 -60 1759 151 16 29 chr1 231362178 231362489 -50831175 - AluJb SINE Alu -5 307 1 1757 175 30 30 chr1 231362489 231362551 -50831113 + MLT1A1 LTR MaLR 304 365 0 385 242 13 3 chr1 231362551 231362765 -50830899 + (CA)n Simple_repeat Simple_repeat 82 981 0 183 290 35 55 chr1 231364092 231364237 -50829427 - L3b LINE CR1 -130 1453 1312 537 315 88 0 chr1 231366396 231366577 -50827087 + MIR SINE MIR 52 248 -14 666 282 122 64 chr1 231366583 231366742 -50826922 - L1ME4a LINE L1 -2 6119 5971 405 0 0 0 chr1 231366742 231366787 -50826877 + (CA)n Simple_repeat Simple_repeat 2 46 0 666 282 122 64 chr1 231366787 231366866 -50826798 - L1ME4a LINE L1 -150 5971 5898 2325 113 0 0 chr1 231366866 231367166 -50826498 + AluSx SINE Alu 1 300 -12 666 282 122 64 chr1 231367166 231367243 -50826421 - L1ME4a LINE L1 -223 5898 5827 2326 117 3 0 chr1 231367243 231367550 -50826114 + AluSx SINE Alu 1 308 -4 666 282 122 64 chr1 231367550 231367814 -50825850 - L1ME4a LINE L1 -294 5827 5504 207 286 135 52 chr1 231367966 231368158 -50825506 + L3b LINE CR1 1293 1500 -83 292 361 19 0 chr1 231369746 231369854 -50823810 + MIR SINE MIR 20 129 -133 417 99 22 44 chr1 231369854 231369945 -50823719 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 2260 112 3 16 chr1 231369949 231370263 -50823401 - AluSx SINE Alu -2 310 1 301 220 67 73 chr1 231370265 231370302 -50823362 + MIR SINE MIR 114 150 -112 1962 148 7 3 chr1 231370302 231370600 -50823064 + AluJb SINE Alu 1 299 -13 301 220 67 73 chr1 231370600 231370712 -50822952 + MIR SINE MIR 150 262 0 303 173 100 10 chr1 231370820 231370922 -50822742 + MIR SINE MIR 45 153 -62 306 266 0 13 chr1 231371452 231371531 -50822133 - L3b LINE CR1 -197 1386 1309 228 100 0 0 chr1 231371980 231372020 -50821644 + (A)n Simple_repeat Simple_repeat 1 40 0 1894 123 51 10 chr1 231372035 231372328 -50821336 + AluSg SINE Alu 6 310 0 206 327 48 42 chr1 231372328 231372496 -50821168 + L3b LINE CR1 1224 1392 -191 1630 199 14 35 chr1 231372847 231373168 -50820496 - MLT1A1 LTR MaLR -2 363 50 1948 166 0 3 chr1 231373168 231373458 -50820206 - AluJb SINE Alu -23 289 1 1630 199 14 35 chr1 231373458 231373507 -50820157 - MLT1A1 LTR MaLR -315 50 1 1446 107 13 0 chr1 231374009 231374234 -50819430 - L1MD3 LINE L1 -13 7982 7755 210 190 35 17 chr1 231375965 231376023 -50817641 - MIR SINE MIR -65 143 85 335 247 14 0 chr1 231376416 231376489 -50817175 + L2 LINE L2 2985 3058 -214 259 240 0 0 chr1 231376604 231376654 -50817010 + L2 LINE L2 3248 3297 -16 472 312 86 47 chr1 231377377 231377532 -50816132 + L2 LINE L2 2957 3104 -168 2357 95 0 0 chr1 231377532 231377867 -50815797 + AluSq SINE Alu 1 335 0 472 312 86 47 chr1 231377867 231378010 -50815654 + L2 LINE L2 3104 3269 -3 894 296 21 0 chr1 231378434 231378677 -50814987 - MIR SINE MIR 0 262 15 404 130 0 0 chr1 231380493 231380562 -50813102 + LTR30 LTR ERV1 552 620 -102 385 248 80 15 chr1 231382112 231382249 -50811415 + MIR3 SINE MIR 3 148 -60 183 250 0 62 chr1 231382318 231382382 -50811282 + L2 LINE L2 3147 3206 -66 217 262 0 16 chr1 231383424 231383485 -50810179 - MIR3 SINE MIR -24 184 125 279 374 39 10 chr1 231383500 231383706 -50809958 - L2 LINE L2 0 3313 3102 578 195 262 0 chr1 231384078 231384242 -50809422 + L1ME1 LINE L1 5955 6161 -5 308 324 31 54 chr1 231384326 231384465 -50809199 + MIR SINE MIR 20 156 -93 2241 136 0 0 chr1 231384465 231384774 -50808890 + AluSx SINE Alu 1 309 -3 308 324 31 54 chr1 231384774 231384806 -50808858 + MIR SINE MIR 156 187 -62 475 223 87 24 chr1 231384852 231384866 -50808798 - MIR SINE MIR 0 262 250 1852 191 0 0 chr1 231384866 231385175 -50808489 + AluSx SINE Alu 1 309 -3 475 223 87 24 chr1 231385175 231385317 -50808347 - MIR SINE MIR -12 250 96 3868 170 42 39 chr1 231385470 231385510 -50808154 - L1MB7 LINE L1 -19 6165 6127 2359 117 0 0 chr1 231385510 231385809 -50807855 + AluSx SINE Alu 1 299 -13 3868 170 42 39 chr1 231385809 231386016 -50807648 - L1MB7 LINE L1 -57 6127 5922 2071 125 3 20 chr1 231386016 231386313 -50807351 + AluJo SINE Alu 12 303 -9 3868 170 42 39 chr1 231386313 231386945 -50806719 - L1MB7 LINE L1 -262 5922 5282 1689 214 7 0 chr1 231386945 231387253 -50806411 - AluJb SINE Alu -1 311 2 3868 170 42 39 chr1 231387253 231387385 -50806279 - L1MB7 LINE L1 -902 5282 5152 283 94 24 176 chr1 231387386 231387430 -50806234 - L1MB2 LINE L1 0 6171 6144 1855 154 23 23 chr1 231387430 231387729 -50805935 - AluJo SINE Alu -13 299 1 283 94 24 176 chr1 231387729 231387769 -50805895 - L1MB2 LINE L1 -27 6144 6100 557 211 23 59 chr1 231387772 231387965 -50805699 + MLT1B LTR MaLR 1 184 -190 238 211 18 18 chr1 231387965 231388022 -50805642 + CT-rich Low_complexity Low_complexity 1 57 0 1121 174 15 0 chr1 231388035 231388231 -50805433 + MLT1B LTR MaLR 192 390 0 4217 175 24 8 chr1 231388241 231389206 -50804458 - L1MB3 LINE L1 -76 6107 5129 251 355 19 39 chr1 231390382 231390537 -50803127 + MIR SINE MIR 3 154 -108 399 315 8 0 chr1 231390614 231390741 -50802923 - MIR3 SINE MIR -2 206 79 198 246 18 18 chr1 231391009 231391066 -50802598 - MIR SINE MIR -87 121 65 387 272 144 19 chr1 231392032 231392290 -50801374 + LTR33A LTR ERVL 25 281 -242 347 281 0 0 chr1 231392329 231392425 -50801239 + LTR33A LTR ERVL 400 495 -28 1851 52 0 0 chr1 231392551 231392762 -50800902 - AluY SINE Alu -19 292 82 2228 122 0 0 chr1 231392808 231393111 -50800553 - AluSx SINE Alu -9 303 1 261 317 245 13 chr1 231393118 231393490 -50800174 + L2 LINE L2 2201 2658 -656 269 320 39 39 chr1 231393675 231393803 -50799861 + L2 LINE L2 2924 3051 -221 2286 104 10 0 chr1 231393868 231394167 -50799497 - AluSx SINE Alu -10 302 1 3056 178 50 111 chr1 231394296 231394314 -50799350 + L1MD1 LINE L1 28 46 -6494 3348 125 10 47 chr1 231394314 231394889 -50798775 + MLT2B3 LTR ERVL 1 554 0 3056 178 50 111 chr1 231394889 231395002 -50798662 + L1MD1 LINE L1 46 164 -6376 2226 133 0 0 chr1 231395002 231395296 -50798368 + AluSx SINE Alu 1 294 -18 3056 178 50 111 chr1 231395296 231395511 -50798153 + L1MD1 LINE L1 164 391 -6149 2267 116 0 0 chr1 231395511 231395805 -50797859 - AluSq SINE Alu -17 296 3 3056 178 50 111 chr1 231395805 231396284 -50797380 + L1MD1 LINE L1 391 804 -5736 3167 168 54 29 chr1 231396295 231397050 -50796614 + L1MD1 LINE L1 1276 2049 -4491 1497 234 48 25 chr1 231397021 231397504 -50796160 + L1MD1 LINE L1 5196 5689 -851 * 839 188 25 31 chr1 231397507 231397687 -50795977 + AluJb SINE Alu 137 312 0 4862 152 37 13 chr1 231397687 231398067 -50795597 + L1MD1 LINE L1 5704 6073 -563 747 168 15 0 chr1 231398067 231398198 -50795466 - FLAM_A SINE Alu 0 133 1 4862 152 37 13 chr1 231398198 231398727 -50794937 + L1MD1 LINE L1 6073 6635 -1 276 322 34 8 chr1 231400036 231400154 -50793510 + LTR67 LTR ERVL 429 549 -8 190 210 86 62 chr1 231400331 231400412 -50793252 - L3b LINE CR1 -130 1453 1371 1372 164 0 14 chr1 231400580 231400800 -50792864 - AluJo SINE Alu -11 301 85 451 269 0 0 chr1 231400921 231401029 -50792635 - MIR SINE MIR 0 262 155 207 100 0 0 chr1 231401254 231401284 -50792380 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 228 67 0 0 chr1 231401316 231401346 -50792318 + (CA)n Simple_repeat Simple_repeat 1 30 0 2564 78 0 3 chr1 231401990 231402299 -50791365 + AluSg SINE Alu 1 308 -2 182 212 0 0 chr1 231402304 231402337 -50791327 - MIR SINE MIR -145 63 31 207 200 0 22 chr1 231402621 231402666 -50790998 + (TGAG)n Simple_repeat Simple_repeat 4 47 0 281 362 0 0 chr1 231402730 231402882 -50790782 - L1ME LINE L1 -331 5790 5639 197 176 0 147 chr1 231403173 231403241 -50790423 + L2 LINE L2 3241 3298 -15 278 264 104 80 chr1 231403300 231403463 -50790201 - MIR SINE MIR -13 249 83 372 253 115 66 chr1 231404648 231404830 -50788834 - MIR SINE MIR -59 203 13 538 281 61 0 chr1 231405891 231405942 -50787722 - MIR SINE MIR -14 248 202 186 43 0 0 chr1 231405942 231405965 -50787699 + (TTATA)n Simple_repeat Simple_repeat 2 24 0 538 281 61 0 chr1 231405965 231406077 -50787587 - MIR SINE MIR -60 202 75 282 219 198 38 chr1 231407700 231407938 -50785726 + L1ME4a LINE L1 5782 6057 -64 269 271 82 111 chr1 231409412 231409524 -50784140 - MIR SINE MIR -10 252 138 1896 199 47 16 chr1 231409524 231410011 -50783653 + MLT1D LTR MaLR 1 502 -3 2251 108 0 26 chr1 231410020 231410325 -50783339 - AluSx SINE Alu -15 297 1 269 271 82 111 chr1 231410325 231410409 -50783255 - MIR SINE MIR -132 130 52 180 318 15 0 chr1 231410410 231410476 -50783188 - L2 LINE L2 -4 3309 3243 243 157 0 0 chr1 231410479 231410530 -50783134 + CT-rich Low_complexity Low_complexity 4 54 0 1828 192 0 6 chr1 231410532 231410845 -50782819 - AluJo SINE Alu -1 311 1 469 300 50 11 chr1 231410943 231411123 -50782541 - MIR SINE MIR -56 206 20 247 272 97 26 chr1 231411638 231411752 -50781912 - MIR SINE MIR -34 228 107 1807 148 3 60 chr1 231412338 231412669 -50780995 + AluJo SINE Alu 1 312 0 188 256 39 64 chr1 231412899 231412977 -50780687 - L2 LINE L2 -71 3201 3126 304 270 265 11 chr1 231413089 231413278 -50780386 - MIR SINE MIR -6 256 20 224 275 160 15 chr1 231415360 231415491 -50778173 - MIR SINE MIR -10 252 103 582 391 44 173 chr1 231415506 231415622 -50778042 - MIR SINE MIR -25 237 146 3873 130 20 26 chr1 231415622 231415913 -50777751 + LTR48B LTR ERV1 1 292 -352 2459 74 3 0 chr1 231415913 231416210 -50777454 + AluSg SINE Alu 2 299 -11 3873 130 20 26 chr1 231416210 231416566 -50777098 + LTR48B LTR ERV1 292 644 0 582 391 44 173 chr1 231416566 231416678 -50776986 - MIR SINE MIR -116 146 21 203 312 37 58 chr1 231418025 231418214 -50775450 + L2 LINE L2 2949 3133 -139 1852 150 27 20 chr1 231418224 231418524 -50775140 - AluJo SINE Alu -10 302 1 198 118 0 0 chr1 231418604 231418638 -50775026 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 388 279 39 0 chr1 231419261 231419365 -50774299 - MIR SINE MIR -64 144 37 2028 175 25 60 chr1 231419423 231419904 -50773760 + MLT1C LTR MaLR 1 464 -3 204 309 60 0 chr1 231419904 231419988 -50773676 - MIR SINE MIR -120 142 54 319 330 0 0 chr1 231420214 231420323 -50773341 - L2 LINE L2 0 3313 3205 1497 145 120 17 chr1 231420777 231421136 -50772528 + L1ME2 LINE L1 5767 6162 -2 320 143 0 0 chr1 231422053 231422102 -50771562 - MIR SINE MIR -108 154 106 232 195 0 0 chr1 231422329 231422370 -50771294 - L2 LINE L2 -6 3307 3267 2038 168 0 0 chr1 231423134 231423432 -50770232 + AluJo SINE Alu 2 299 -13 520 322 44 10 chr1 231423473 231423678 -50769986 + MIR SINE MIR 8 219 -43 21 0 0 0 chr1 231424129 231424150 -50769514 + AT_rich Low_complexity Low_complexity 1 21 0 1815 167 7 7 chr1 231424190 231424489 -50769175 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr1 231424492 231424515 -50769149 + AT_rich Low_complexity Low_complexity 1 23 0 1841 167 0 4 chr1 231424833 231425114 -50768550 + AluJb SINE Alu 1 280 -32 1031 97 0 7 chr1 231425114 231425269 -50768395 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 1078 170 14 104 chr1 231425755 231426044 -50767620 - AluJo SINE Alu -4 308 46 211 169 0 85 chr1 231426182 231426241 -50767423 + MIR SINE MIR 117 170 -92 2232 118 0 10 chr1 231426249 231426553 -50767111 + AluSg1 SINE Alu 1 301 -8 465 246 8 8 chr1 231426679 231426801 -50766863 + MIR SINE MIR 91 212 -50 2428 74 0 7 chr1 231427052 231427350 -50766314 + AluSp SINE Alu 1 296 -17 2054 117 0 4 chr1 231427457 231427731 -50765933 - AluSg SINE Alu -36 274 2 353 222 157 39 chr1 231427733 231427886 -50765778 + L1MC4 LINE L1 7871 8041 -1 676 120 0 10 chr1 231428790 231428890 -50764774 + AluS SINE Alu 3 101 -211 205 27 81 0 chr1 231428945 231428982 -50764682 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 249 301 0 0 chr1 231429234 231429307 -50764357 - MIR SINE MIR -109 153 81 491 234 60 158 chr1 231429509 231429928 -50763736 + L3 LINE CR1 1189 1566 -11 529 244 15 8 chr1 231430089 231430220 -50763444 + MER5B DNA MER1_type 2 133 -45 223 182 0 18 chr1 231430323 231430378 -50763286 + (CA)n Simple_repeat Simple_repeat 1 54 0 1172 93 22 6 chr1 231431772 231431954 -50761710 - L1PA12 LINE L1 0 6168 5984 42 20 0 0 chr1 231432030 231432079 -50761585 + AT_rich Low_complexity Low_complexity 1 49 0 183 255 59 0 chr1 231432096 231432147 -50761517 - MIR3 SINE MIR -50 158 105 2320 106 3 0 chr1 231432424 231432725 -50760939 - AluSg SINE Alu -8 302 1 312 206 178 0 chr1 231432775 231432848 -50760816 - MER58 DNA MER1_type -2 2418 128 189 0 0 0 chr1 231432848 231432869 -50760795 + (A)n Simple_repeat Simple_repeat 1 21 0 289 234 0 31 chr1 231432877 231432941 -50760723 - MER58 DNA MER1_type -160 55 1 472 171 219 0 chr1 231433614 231433737 -50759927 + MIR SINE MIR 113 262 0 554 274 10 56 chr1 231433751 231433948 -50759716 - MIR3 SINE MIR 0 208 21 941 214 6 6 chr1 231434265 231434443 -50759221 + MER45A DNA AcHobo 1 178 0 1275 172 0 23 chr1 231434585 231434806 -50758858 + AluJb SINE Alu 87 302 -10 398 313 177 20 chr1 231435523 231435721 -50757943 + MIR SINE MIR 2 230 -32 779 215 11 11 chr1 231437067 231437244 -50756420 + MER5B DNA MER1_type 2 178 0 1278 148 4 21 chr1 231437442 231437678 -50755986 + L1MB3 LINE L1 5944 6175 -8 2302 219 13 37 chr1 231437831 231438447 -50755217 + L1M4 LINE L1 3794 4394 -1752 312 293 58 64 chr1 231439127 231439315 -50754349 + MIR3 SINE MIR 7 193 -15 1872 104 85 0 chr1 231439558 231439818 -50753846 - AluSq SINE Alu -31 282 1 182 372 0 12 chr1 231440446 231440532 -50753132 - MIR SINE MIR -117 145 61 189 150 25 25 chr1 231441670 231441710 -50751954 - MIR SINE MIR -66 142 103 182 179 26 0 chr1 231442812 231442851 -50750813 + L2 LINE L2 3213 3252 -20 214 284 0 15 chr1 231442912 231442979 -50750685 + G-rich Low_complexity Low_complexity 2 67 0 974 294 8 0 chr1 231443520 231443772 -50749892 + MIR SINE MIR 9 262 0 742 95 0 0 chr1 231444250 231444355 -50749309 + L1PA16 LINE L1 6057 6161 -5 203 276 8 104 chr1 231445515 231445649 -50748015 + MIR SINE MIR 118 238 -24 966 257 57 4 chr1 231446250 231446495 -50747169 - MIR SINE MIR 0 262 5 587 197 82 14 chr1 231446577 231446724 -50746940 - L1MB8 LINE L1 -1 6177 6021 472 171 219 0 chr1 231446739 231446862 -50746802 + MIR SINE MIR 113 262 0 554 274 10 56 chr1 231446876 231447073 -50746591 - MIR3 SINE MIR 0 208 21 969 215 6 0 chr1 231447390 231447567 -50746097 + MER45A DNA AcHobo 1 178 0 1275 172 0 23 chr1 231447708 231447929 -50745735 + AluJb SINE Alu 87 302 -10 378 318 177 20 chr1 231448647 231448845 -50744819 + MIR SINE MIR 2 230 -32 278 132 19 0 chr1 231450710 231450763 -50742901 + A-rich Low_complexity Low_complexity 1 54 0 2198 108 28 0 chr1 231450982 231451270 -50742394 + AluSq SINE Alu 1 296 -17 1560 189 48 7 chr1 231451432 231451727 -50741937 + AluJb SINE Alu 3 308 0 211 283 138 7 chr1 231451810 231451948 -50741716 + L2 LINE L2 1819 1974 -1340 24 0 0 0 chr1 231451967 231451991 -50741673 + AT_rich Low_complexity Low_complexity 1 24 0 314 156 0 47 chr1 231452048 231452112 -50741552 - MLT2B1 LTR ERVL -3 517 457 2065 167 31 74 chr1 231452145 231452672 -50740992 - MLT2B1 LTR ERVL -21 464 1 2498 75 0 13 chr1 231452709 231453017 -50740647 + AluY SINE Alu 1 304 -7 635 291 107 15 chr1 231453158 231453314 -50740350 - L1ME3A LINE L1 -234 5936 5796 2226 121 7 0 chr1 231453314 231453619 -50740045 - AluSg SINE Alu -3 307 1 635 291 107 15 chr1 231453619 231453996 -50739668 - L1ME3A LINE L1 -374 5796 5271 1563 210 50 32 chr1 231454019 231454371 -50739293 - L1MB8 LINE L1 -1 6177 5865 2569 72 0 0 chr1 231454371 231454677 -50738987 - AluY SINE Alu -5 306 1 1563 210 50 32 chr1 231454677 231454808 -50738856 - L1MB8 LINE L1 -313 5865 5738 424 221 23 23 chr1 231454816 231454947 -50738717 - L1MCc LINE L1 -4868 2254 2124 2375 119 0 0 chr1 231454949 231455261 -50738403 - AluSx SINE Alu 0 312 1 989 143 7 0 chr1 231455261 231455401 -50738263 - AluSq/x SINE Alu -172 141 1 794 290 77 26 chr1 231455422 231456006 -50737658 - L1MCc LINE L1 -4889 1534 1282 2529 193 36 61 chr1 231456087 231456204 -50737460 - L1MEc LINE L1 -3680 2746 2627 1549 148 0 4 chr1 231456204 231456434 -50737230 - AluJb SINE Alu -2 310 82 2529 193 36 61 chr1 231456434 231456682 -50736982 - L1MEc LINE L1 -3799 2627 2374 2329 117 0 0 chr1 231456682 231456991 -50736673 - AluSx SINE Alu -3 309 1 2529 193 36 61 chr1 231456991 231457373 -50736291 - L1MEc LINE L1 -4052 2374 2054 2455 96 0 0 chr1 231457373 231457685 -50735979 - AluSx SINE Alu 0 312 1 2529 193 36 61 chr1 231457685 231457756 -50735908 - L1MEc LINE L1 -4372 2054 1983 299 310 42 0 chr1 231457746 231457888 -50735776 - L1MEc LINE L1 -4766 1660 1513 * 375 229 8 16 chr1 231457888 231458010 -50735654 - L1MEc LINE L1 -4653 1743 1623 804 169 0 63 chr1 231458070 231458179 -50735485 + AluJo/FLAM SINE Alu 1 101 -211 1694 98 0 0 chr1 231458179 231458394 -50735270 - AluSq SINE Alu -14 299 85 804 169 0 63 chr1 231458394 231458426 -50735238 + AluJo/FLAM SINE Alu 101 133 -179 605 140 0 0 chr1 231458428 231458521 -50735143 + FRAM SINE Alu 47 139 -37 882 206 12 61 chr1 231458566 231458813 -50734851 - L1MB7 LINE L1 -2 6182 5948 1007 231 86 4 chr1 231458840 231459109 -50734555 - L1MEc LINE L1 -6070 326 36 2099 138 7 0 chr1 231459137 231459442 -50734222 + AluSx SINE Alu 5 311 -1 222 118 0 0 chr1 231459450 231459484 -50734180 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 1824 173 0 7 chr1 231459620 231459909 -50733755 + AluJo SINE Alu 25 311 -1 300 122 0 0 chr1 231459926 231459967 -50733697 + MER4E LTR ERV1 653 693 -73 23 54 0 0 chr1 231459967 231460004 -50733660 + AT_rich Low_complexity Low_complexity 1 37 0 2391 97 10 0 chr1 231460004 231460314 -50733350 + AluSq SINE Alu 1 313 0 2703 111 15 8 chr1 231460321 231460719 -50732945 + MER84 LTR ERVI 1 401 -106 698 97 8 112 chr1 231461302 231461390 -50732274 + MER84 LTR ERVI 388 459 -48 2372 83 0 26 chr1 231461390 231461702 -50731962 - AluSq SINE Alu -8 305 2 698 97 8 112 chr1 231461702 231461747 -50731917 + MER84 LTR ERVI 459 507 0 311 195 73 12 chr1 231461747 231461829 -50731835 + L1MB8 LINE L1 5756 5842 -336 3220 131 45 23 chr1 231461830 231462238 -50731426 + LTR49 LTR ERV1 1 427 -168 2195 122 0 10 chr1 231462238 231462541 -50731123 + AluSx SINE Alu 1 300 -12 3220 131 45 23 chr1 231462541 231462704 -50730960 + LTR49 LTR ERV1 427 585 -10 448 176 0 92 chr1 231462706 231462772 -50730892 + L1MB8 LINE L1 5871 5923 -261 2002 115 0 56 chr1 231462772 231463095 -50730569 + AluJb SINE Alu 1 305 -7 448 176 0 92 chr1 231463095 231463147 -50730517 + L1MB8 LINE L1 5923 5978 -206 1509 209 89 96 chr1 231463147 231463587 -50730077 - LTR8 LTR ERV1 0 691 291 715 197 0 0 chr1 231463598 231463730 -50729934 - AluSg/x SINE Alu -24 288 157 268 349 3 37 chr1 231463748 231463922 -50729742 + CT-rich Low_complexity Low_complexity 4 285 0 2163 69 0 11 chr1 231464229 231464503 -50729161 - AluSx SINE Alu -39 273 3 1294 165 0 54 chr1 231464514 231464774 -50728890 - LTR8 LTR ERV1 -445 246 1 752 157 19 6 chr1 231464802 231464961 -50728703 + L1MB8 LINE L1 6006 6166 -12 644 120 19 0 chr1 231465084 231465192 -50728472 + CT-rich Low_complexity Low_complexity 2 111 0 203 337 67 11 chr1 231465192 231465281 -50728383 - L2 LINE L2 -31 3241 3148 3074 171 25 73 chr1 231465917 231466643 -50727021 + LTR8 LTR ERV1 1 691 0 1502 272 97 15 chr1 231467123 231467667 -50725997 + MLT1G1 LTR MaLR 5 593 -2 278 184 0 92 chr1 231467877 231467953 -50725711 + L2 LINE L2 3244 3312 -1 3928 81 20 0 chr1 231468142 231468685 -50724979 + MER41A LTR ERV1 1 554 0 198 310 180 0 chr1 231468852 231468952 -50724712 - L2 LINE L2 -7 3265 3148 2256 89 10 32 chr1 231469080 231469393 -50724271 + AluSx SINE Alu 1 306 -6 1905 155 7 3 chr1 231470434 231470741 -50722923 - AluJb SINE Alu 0 308 1 268 203 203 49 chr1 231470921 231471044 -50722620 - MIR3 SINE MIR -28 180 39 * 407 302 101 7 chr1 231471009 231471158 -50722506 + MIR SINE MIR 97 259 -3 2193 124 3 0 chr1 231471175 231471474 -50722190 - AluSx SINE Alu -7 305 6 252 309 88 29 chr1 231471541 231471677 -50721987 + L2 LINE L2 3167 3310 -3 804 158 0 0 chr1 231471679 231471831 -50721833 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 321 298 89 32 chr1 231472742 231472866 -50720798 - MER94 DNA DNA -2 132 2 1885 139 46 7 chr1 231473423 231473704 -50719960 - AluSx SINE Alu -20 292 1 216 279 168 37 chr1 231474179 231474340 -50719324 - MIR SINE MIR -11 251 70 260 271 12 19 chr1 231475792 231475892 -50717772 + MIR SINE MIR 34 130 -78 2211 112 6 16 chr1 231476791 231477104 -50716560 - AluSx SINE Alu -2 310 1 731 124 0 103 chr1 231477109 231477254 -50716410 - FLAM_C SINE Alu -2 131 2 656 299 103 4 chr1 231477544 231477778 -50715886 - MIR SINE MIR 0 262 6 1746 141 20 37 chr1 231478764 231479062 -50714602 - AluSq SINE Alu -19 294 2 2114 118 7 0 chr1 231479916 231480205 -50713459 - AluSq SINE Alu -22 291 1 414 271 49 28 chr1 231480782 231480926 -50712738 - MIR SINE MIR -70 192 46 435 342 55 21 chr1 231481808 231481994 -50711670 + MIR SINE MIR 6 203 -59 2095 135 0 20 chr1 231481994 231482297 -50711367 + AluSx SINE Alu 1 297 -15 435 342 55 21 chr1 231482297 231482347 -50711317 + MIR SINE MIR 203 250 -12 686 238 82 17 chr1 231482445 231482676 -50710988 - MLT1L LTR MaLR -349 266 21 257 247 11 97 chr1 231483175 231483268 -50710396 - L2 LINE L2 -1 3271 3187 647 305 28 5 chr1 231483806 231483883 -50709781 - MIR SINE MIR -30 232 158 2345 106 0 0 chr1 231483883 231484184 -50709480 - AluSg SINE Alu -9 301 1 647 305 28 5 chr1 231484184 231484319 -50709345 - MIR SINE MIR -104 158 15 187 263 66 13 chr1 231484331 231484407 -50709257 + MER5A DNA MER1_type 8 87 -102 187 333 14 0 chr1 231484417 231484486 -50709178 - MER5A DNA MER1_type -69 120 51 2307 105 0 25 chr1 231484530 231484845 -50708819 - AluSx SINE Alu -5 307 1 226 321 18 9 chr1 231484892 231485001 -50708663 - L1ME3A LINE L1 -15 6155 6046 332 288 58 0 chr1 231485212 231485351 -50708313 - L1ME3A LINE L1 -218 5952 5806 201 339 0 0 chr1 231485401 231485460 -50708204 + L2 LINE L2 3210 3268 -4 1495 186 69 14 chr1 231486573 231486848 -50706816 - AluJo SINE Alu -19 293 4 438 301 49 30 chr1 231486863 231487066 -50706598 + MIR SINE MIR 10 216 -46 273 163 0 0 chr1 231487094 231487143 -50706521 + (CA)n Simple_repeat Simple_repeat 1 49 0 250 259 17 0 chr1 231488036 231488094 -50705570 + L2 LINE L2 3254 3312 -1 2100 92 123 3 chr1 231488328 231488653 -50705011 - THE1B LTR MaLR 0 364 1 187 269 148 19 chr1 231489150 231489258 -50704406 + MIR3 SINE MIR 8 129 -79 710 286 54 17 chr1 231490403 231490644 -50703020 - MIR SINE MIR 0 262 13 21 36 0 0 chr1 231490649 231490677 -50702987 + AT_rich Low_complexity Low_complexity 1 28 0 678 162 15 37 chr1 231490677 231490813 -50702851 - AluJb SINE Alu -178 134 2 345 325 17 0 chr1 231491902 231492019 -50701645 - L2 LINE L2 -3 3310 3192 208 231 0 0 chr1 231492032 231492071 -50701593 - MIR3 SINE MIR -20 188 150 1418 143 14 0 chr1 231492071 231492280 -50701384 - AluSg/x SINE Alu -6 304 93 323 299 52 0 chr1 231492280 231492377 -50701287 - MIR SINE MIR -59 149 48 267 243 14 14 chr1 231493894 231493968 -50699696 - MIR SINE MIR -85 123 50 522 271 42 15 chr1 231494097 231494272 -50699392 - MIR SINE MIR -20 188 1 520 228 87 0 chr1 231494337 231494464 -50699200 + MIR SINE MIR 7 144 -118 1878 141 37 13 chr1 231494533 231494831 -50698833 - AluSg SINE Alu -1 309 5 211 322 78 0 chr1 231494835 231494925 -50698739 + MIR SINE MIR 166 262 0 340 311 8 0 chr1 231495909 231496028 -50697636 + MIR SINE MIR 142 261 -1 514 261 26 26 chr1 231496780 231496933 -50696731 - MIR3 SINE MIR -33 175 23 1704 113 16 19 chr1 231498504 231498761 -50694903 + AluSq SINE Alu 37 292 -21 2170 78 10 20 chr1 231500257 231500552 -50693112 - AluSp SINE Alu -21 292 1 281 30 0 0 chr1 231500951 231500984 -50692680 + U2 snRNA snRNA 1 33 -155 462 227 45 6 chr1 231501150 231501303 -50692361 - MER5B DNA MER1_type -28 161 5 297 0 0 0 chr1 231501384 231501417 -50692247 + (CCCCG)n Simple_repeat Simple_repeat 4 36 0 547 241 35 0 chr1 231501470 231501615 -50692049 - L3 LINE CR1 -251 1326 1177 295 206 15 0 chr1 231501841 231501909 -50691755 - MIR SINE MIR -18 244 176 582 243 94 40 chr1 231501926 231502128 -50691536 - MIR SINE MIR -22 240 28 670 250 112 0 chr1 231502229 231502417 -50691247 - MIR SINE MIR -3 259 51 304 290 32 0 chr1 231502413 231502506 -50691158 + MIR3 SINE MIR 76 171 -37 * 499 201 201 38 chr1 231502507 231502666 -50690998 - MER5A DNA MER1_type -1 188 4 685 250 80 94 chr1 231503064 231503162 -50690502 + MLT1I LTR MaLR 63 161 -248 2426 98 0 9 chr1 231503162 231503478 -50690186 - AluSq SINE Alu 0 313 1 685 250 80 94 chr1 231503478 231503731 -50689933 + MLT1I LTR MaLR 161 409 0 239 329 12 0 chr1 231504471 231504553 -50689111 - MIR3 SINE MIR -4 204 122 377 230 142 9 chr1 231505717 231505830 -50687834 - MIR SINE MIR -61 147 20 958 133 139 0 chr1 231505838 231506004 -50687660 - MER5A DNA MER1_type 0 189 1 535 257 171 0 chr1 231506023 231506175 -50687489 + MER5A DNA MER1_type 12 189 0 21 0 0 0 chr1 231506552 231506573 -50687091 + AT_rich Low_complexity Low_complexity 1 21 0 1553 166 7 21 chr1 231507013 231507303 -50686361 - AluJo SINE Alu -6 306 21 1266 192 61 7 chr1 231507325 231507622 -50686042 - L1MC2 LINE L1 -9 6335 6023 1122 265 79 14 chr1 231507768 231507859 -50685805 - L2 LINE L2 0 3313 3229 2423 68 0 0 chr1 231507859 231508166 -50685498 + AluY SINE Alu 1 307 -4 1122 265 79 14 chr1 231508166 231508659 -50685005 - L2 LINE L2 -84 3229 2699 2177 99 0 3 chr1 231508768 231509070 -50684594 + AluSq SINE Alu 1 301 -12 2281 96 0 0 chr1 231509465 231509766 -50683898 + AluSg SINE Alu 5 305 -5 299 333 0 33 chr1 231510405 231510525 -50683139 + MIR SINE MIR 49 164 -98 2237 92 0 3 chr1 231510659 231510964 -50682700 + AluSp SINE Alu 9 312 -1 324 0 0 0 chr1 231511278 231511314 -50682350 + (TG)n Simple_repeat Simple_repeat 2 37 0 482 311 77 30 chr1 231511690 231511925 -50681739 - MIR SINE MIR -10 252 7 198 0 0 0 chr1 231513207 231513229 -50680435 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1741 139 7 56 chr1 231513233 231513535 -50680129 - AluSx SINE Alu -25 287 1 2466 176 51 16 chr1 231514368 231514856 -50678808 + MLT1D LTR MaLR 1 505 0 257 284 29 10 chr1 231515210 231515257 -50678407 + (CCCTAA)n Simple_repeat Simple_repeat 1 46 -58 2466 69 0 0 chr1 231515257 231515561 -50678103 - AluY SINE Alu -7 304 1 257 284 29 10 chr1 231515561 231515615 -50678049 + (CCCTAA)n Simple_repeat Simple_repeat 46 104 0 187 243 0 0 chr1 231515875 231515912 -50677752 + MIR SINE MIR 108 144 -118 832 156 0 7 chr1 231516010 231516145 -50677519 - AluJo SINE Alu -178 134 1 687 264 83 29 chr1 231516908 231517150 -50676514 + MIR SINE MIR 6 260 -2 528 296 23 0 chr1 231517150 231517326 -50676338 - MIR SINE MIR -63 199 20 1743 149 13 17 chr1 231517482 231517783 -50675881 + AluJb SINE Alu 1 300 -12 1503 236 83 22 chr1 231518228 231518673 -50674991 - MLT1D LTR MaLR -1 504 33 2218 99 16 0 chr1 231518678 231518981 -50674683 + AluSg SINE Alu 1 308 -2 321 315 58 41 chr1 231520140 231520336 -50673328 - MIR3 SINE MIR -27 235 45 2005 117 0 0 chr1 231520482 231520802 -50672862 + AluSx SINE Alu 1 320 0 432 210 58 65 chr1 231521569 231521707 -50671957 - MIR SINE MIR -70 192 56 257 308 56 0 chr1 231522410 231522517 -50671147 + MIR SINE MIR 36 148 -60 326 317 76 7 chr1 231522519 231522664 -50671000 + MIR SINE MIR 1 155 -107 1853 199 86 7 chr1 231522675 231523093 -50670571 - MER82 DNA MER2_type -13 640 190 1395 185 31 31 chr1 231523100 231523387 -50670277 - AluJb SINE Alu -14 298 12 793 193 5 89 chr1 231523393 231523446 -50670218 - MER82 DNA MER2_type -458 195 139 1885 116 14 18 chr1 231523446 231523764 -50669900 - AluSx SINE Alu 0 317 1 793 193 5 89 chr1 231523764 231523921 -50669743 - MER82 DNA MER2_type -514 139 1 379 283 75 0 chr1 231524213 231524333 -50669331 - MIR SINE MIR -65 197 69 2709 114 22 65 chr1 231524333 231524571 -50669093 - MSTA LTR MaLR 0 428 216 2043 137 0 0 chr1 231524571 231524864 -50668800 - AluSx SINE Alu -19 293 1 2709 114 22 65 chr1 231524864 231525072 -50668592 - MSTA LTR MaLR -212 216 1 1613 182 17 46 chr1 231525623 231525974 -50667690 - MLT1A1 LTR MaLR -2 363 23 2113 118 0 0 chr1 231525974 231526282 -50667382 + AluSq SINE Alu 1 308 0 1625 260 92 62 chr1 231526927 231527127 -50666537 - HAL1 LINE L1 0 2507 2314 2003 96 11 7 chr1 231527127 231527474 -50666190 + AluSx SINE Alu 3 350 0 1625 260 92 62 chr1 231527474 231528122 -50665542 - HAL1 LINE L1 -193 2314 1633 2082 103 3 34 chr1 231528122 231528443 -50665221 - AluSx SINE Alu 0 312 2 255 178 22 0 chr1 231528443 231528488 -50665176 + MER84 LTR ERVI 462 507 0 307 195 73 12 chr1 231528488 231528570 -50665094 + L1MB7 LINE L1 5756 5842 -336 2983 130 52 36 chr1 231528571 231528985 -50664679 + LTR49 LTR ERV1 1 428 -167 1884 136 3 14 chr1 231528985 231529280 -50664384 + AluSx SINE Alu 11 302 -10 2983 130 52 36 chr1 231529280 231529441 -50664223 + LTR49 LTR ERV1 428 585 -10 417 185 0 92 chr1 231529443 231529509 -50664155 + L1MB7 LINE L1 5871 5923 -261 1710 138 0 55 chr1 231529509 231529834 -50663830 + AluJb SINE Alu 1 307 -5 417 185 0 92 chr1 231529834 231529886 -50663778 + L1MB7 LINE L1 5923 5978 -206 1509 209 89 96 chr1 231529886 231530326 -50663338 - LTR8 LTR ERV1 0 691 291 2220 73 7 3 chr1 231530337 231530623 -50663041 - AluY SINE Alu -24 287 1 1603 175 26 13 chr1 231530627 231531004 -50662660 - L1MEc LINE L1 -4183 2213 1832 923 158 0 0 chr1 231531006 231531164 -50662500 - AluSg/x SINE Alu -1 309 152 1746 136 6 66 chr1 231531274 231531606 -50662058 + AluSq SINE Alu 1 312 -1 284 315 143 30 chr1 231531953 231532156 -50661508 - L2 LINE L2 -2 3270 3045 2183 201 126 30 chr1 231532188 231532506 -50661158 - MLT1E LTR MaLR -2 591 305 2126 106 0 17 chr1 231532506 231532807 -50660857 + AluSg SINE Alu 1 296 -14 2183 201 126 30 chr1 231532807 231533026 -50660638 - MLT1E LTR MaLR -288 305 2 198 242 30 101 chr1 231535237 231535336 -50658328 - MIR SINE MIR -46 216 125 297 295 101 7 chr1 231536447 231536596 -50657068 - MIR SINE MIR -6 256 94 429 235 46 7 chr1 231536762 231536915 -50656749 + L1ME4a LINE L1 5959 6117 -4 352 160 0 13 chr1 231536927 231537117 -50656547 + AluJo SINE Alu 2 236 -66 2094 126 3 0 chr1 231537127 231537420 -50656244 - AluSx SINE Alu -18 294 1 716 59 0 0 chr1 231537434 231537543 -50656121 - AluSc SINE Alu 0 302 194 367 260 84 17 chr1 231538155 231538343 -50655321 - MIR SINE MIR -50 212 15 2394 109 9 15 chr1 231538879 231539218 -50654446 + MER1B DNA MER1_type 1 337 0 212 247 101 108 chr1 231540703 231540807 -50652857 + MIR3 SINE MIR 48 152 -56 688 181 219 7 chr1 231540807 231540962 -50652702 + MER5A DNA MER1_type 1 188 -1 212 247 101 108 chr1 231540962 231541015 -50652649 + MIR3 SINE MIR 152 204 -4 2373 91 0 0 chr1 231542814 231543122 -50650542 - AluSg SINE Alu -2 308 1 842 261 76 0 chr1 231544294 231544532 -50649132 - MIR SINE MIR 0 262 7 428 301 113 10 chr1 231544530 231544733 -50648931 - MIR SINE MIR -2 260 37 * 302 235 148 0 chr1 231545653 231545734 -50647930 - MIR SINE MIR -87 121 29 464 207 233 145 chr1 231546526 231546600 -50647064 - Charlie1a DNA MER1_type -2119 642 576 1999 132 7 0 chr1 231546600 231546895 -50646769 + AluSx SINE Alu 1 297 -15 464 207 233 145 chr1 231546895 231546949 -50646715 - Charlie1a DNA MER1_type -2185 576 528 1678 188 0 22 chr1 231546949 231547268 -50646396 - AluJb SINE Alu 0 312 1 464 207 233 145 chr1 231547268 231547318 -50646346 - Charlie1a DNA MER1_type -2233 528 484 1950 159 3 0 chr1 231547318 231547620 -50646044 - AluJb SINE Alu -7 305 3 464 207 233 145 chr1 231547620 231547667 -50645997 - Charlie1a DNA MER1_type -2277 484 443 2189 104 3 0 chr1 231547667 231547964 -50645700 + AluSp SINE Alu 1 298 -15 464 207 233 145 chr1 231547964 231548232 -50645432 - Charlie1a DNA MER1_type -2318 443 102 401 351 84 25 chr1 231549419 231549704 -50643960 - L2 LINE L2 0 3272 2971 854 202 73 11 chr1 231551182 231551360 -50642304 + MER5A DNA MER1_type 1 189 0 689 164 22 37 chr1 231752489 231752623 -50441041 + FLAM_C SINE Alu 2 133 0 286 111 56 0 chr1 231753345 231753417 -50440247 - L1ME4a LINE L1 -34 6087 6012 214 197 14 99 chr1 231753642 231753713 -50439951 - MER5A DNA MER1_type -114 75 11 351 329 106 32 chr1 231754457 231754806 -50438858 - L2 LINE L2 -8 3264 2865 405 0 0 0 chr1 231754806 231754851 -50438813 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 329 106 32 chr1 231754851 231755079 -50438585 - L2 LINE L2 -407 2865 2655 198 0 0 0 chr1 231761460 231761482 -50432182 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 9508 24 1 196 chr1 231761483 231763133 -50430531 - SVA Other Other -10 1376 50 192 40 0 0 chr1 231763133 231763158 -50430506 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 349 269 8 82 chr1 231764007 231764141 -50429523 + MIR3 SINE MIR 58 181 -27 31 58 0 0 chr1 231764701 231764753 -50428911 + GC_rich Low_complexity Low_complexity 1 52 0 393 232 139 62 chr1 231767168 231767362 -50426302 + MIR SINE MIR 54 262 0 447 260 0 0 chr1 231768278 231768378 -50425286 - U13 snRNA snRNA -4 100 1 231 125 0 0 chr1 231768770 231768810 -50424854 + (TG)n Simple_repeat Simple_repeat 2 41 0 771 270 37 0 chr1 231768920 231769109 -50424555 + MIR SINE MIR 67 262 0 252 0 0 0 chr1 231769315 231769343 -50424321 + (T)n Simple_repeat Simple_repeat 1 28 0 269 284 0 53 chr1 231769625 231769720 -50423944 + MIR SINE MIR 40 129 -79 594 315 71 5 chr1 231770371 231770568 -50423096 + MIR SINE MIR 51 260 -2 676 291 70 14 chr1 231772009 231772249 -50421415 - MIR SINE MIR 0 262 7 210 143 0 0 chr1 231772940 231772975 -50420689 + (CA)n Simple_repeat Simple_repeat 2 36 0 336 275 241 38 chr1 231773095 231773315 -50420349 + MIR3 SINE MIR 1 261 -1 255 103 0 0 chr1 231774185 231774224 -50419440 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 284 198 0 10 chr1 231774856 231774952 -50418712 + (CA)n Simple_repeat Simple_repeat 1 95 0 542 203 13 7 chr1 231774985 231775446 -50418218 + (CA)n Simple_repeat Simple_repeat 1 464 0 242 214 29 0 chr1 231775482 231775622 -50418042 + (CA)n Simple_repeat Simple_repeat 2 145 0 453 213 8 71 chr1 231776082 231776471 -50417193 + (CA)n Simple_repeat Simple_repeat 1 364 0 289 204 29 21 chr1 231776559 231776842 -50416822 + (CA)n Simple_repeat Simple_repeat 1 285 0 194 210 32 0 chr1 231776881 231777005 -50416659 + (CA)n Simple_repeat Simple_repeat 2 129 0 400 234 24 2 chr1 231777023 231777460 -50416204 + (CA)n Simple_repeat Simple_repeat 1 446 0 332 144 29 10 chr1 231777557 231777661 -50416003 + (CA)n Simple_repeat Simple_repeat 2 107 0 1191 169 4 87 chr1 231778219 231778473 -50415191 - AluJb SINE Alu -10 302 70 368 136 0 0 chr1 231778495 231778561 -50415103 + MER45A DNA AcHobo 100 165 -13 2185 85 4 0 chr1 231778561 231778888 -50414776 - AluSx SINE Alu 0 328 1 979 254 121 0 chr1 231779283 231779515 -50414149 + MIR SINE MIR 3 262 0 234 269 29 77 chr1 231779516 231779620 -50414044 - L2 LINE L2 -1 3312 3214 287 303 30 10 chr1 231779883 231779982 -50413682 + MIR SINE MIR 30 130 -78 181 139 47 0 chr1 231780053 231780096 -50413568 + GA-rich Low_complexity Low_complexity 1 45 0 287 365 22 7 chr1 231781080 231781217 -50412447 - MER91A DNA MER1_type -2 194 56 458 217 0 47 chr1 231781375 231781481 -50412183 + MER5A DNA MER1_type 9 109 -80 469 326 50 39 chr1 231781778 231782036 -50411628 + L2 LINE L2 3011 3271 -1 225 94 0 0 chr1 231782039 231782071 -50411593 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 293 241 13 25 chr1 231782832 231782911 -50410753 - L2 LINE L2 -14 3299 3222 2146 97 3 27 chr1 231783032 231783332 -50410332 - AluSx SINE Alu -19 293 1 1702 261 46 19 chr1 231783353 231783877 -50409787 - L1ME3A LINE L1 -17 6153 5616 1404 224 120 51 chr1 231784065 231784498 -50409166 - MLT1C LTR MaLR -4 463 1 226 316 161 26 chr1 231784585 231784740 -50408924 + L2 LINE L2 3003 3178 -94 647 220 54 18 chr1 231785354 231785522 -50408142 - MIR SINE MIR -60 202 29 255 191 0 0 chr1 231785568 231785615 -50408049 + L3b LINE CR1 1339 1385 -198 216 200 29 43 chr1 231786087 231786157 -50407507 + (CGGG)n Simple_repeat Simple_repeat 2 70 0 293 246 100 27 chr1 231786227 231786337 -50407327 + MIR SINE MIR 36 153 -109 300 111 0 0 chr1 231786668 231786713 -50406951 + (TG)n Simple_repeat Simple_repeat 1 45 0 401 364 46 12 chr1 231787643 231787816 -50405848 + L2 LINE L2 3091 3269 -3 438 241 12 16 chr1 231787921 231788087 -50405577 - MIR SINE MIR -10 252 20 1143 169 51 0 chr1 231788087 231788282 -50405382 + MER3 DNA MER1_type 5 209 0 353 357 49 7 chr1 231789780 231789923 -50403741 + MIR3 SINE MIR 14 162 -46 1055 220 5 18 chr1 231789965 231790188 -50403476 - AluJo SINE Alu -6 306 87 365 294 41 0 chr1 231790191 231790328 -50403336 + MER20B DNA MER1_type 57 202 -17 308 270 90 9 chr1 231791343 231791454 -50402210 - L2 LINE L2 0 3272 3153 499 236 78 73 chr1 231791507 231791538 -50402126 - MIR SINE MIR 0 262 233 1997 105 7 14 chr1 231791538 231791856 -50401808 - AluSq SINE Alu 0 316 1 499 236 78 73 chr1 231791856 231791901 -50401763 - MIR SINE MIR -29 233 190 2143 112 0 3 chr1 231791901 231792195 -50401469 - AluSx SINE Alu -19 293 1 499 236 78 73 chr1 231792195 231792307 -50401357 - MIR SINE MIR -72 190 71 470 205 24 8 chr1 231792497 231792525 -50401139 + L1MA9 LINE L1 6127 6153 -146 345 93 0 0 chr1 231792525 231792579 -50401085 + (CA)n Simple_repeat Simple_repeat 2 55 0 470 205 24 8 chr1 231792579 231792679 -50400985 + L1MA9 LINE L1 6153 6272 -27 2004 118 7 0 chr1 231794497 231794786 -50398878 + AluSq SINE Alu 1 291 -22 442 272 99 30 chr1 231795617 231795819 -50397845 - MIR SINE MIR -27 235 20 365 291 61 14 chr1 231795816 231795964 -50397700 + MIR SINE MIR 108 262 0 * 1858 115 67 45 chr1 231796161 231796491 -50397173 - MER1B DNA MER1_type 0 337 1 309 162 30 101 chr1 231796659 231796758 -50396906 + MIR3 SINE MIR 111 202 -6 241 339 67 20 chr1 231797433 231797628 -50396036 + L2 LINE L2 2450 2653 -661 247 0 0 0 chr1 231798019 231798050 -50395614 + U7 snRNA snRNA 2 32 -31 22 0 0 0 chr1 231798058 231798080 -50395584 + AT_rich Low_complexity Low_complexity 1 22 0 587 266 113 10 chr1 231799305 231799508 -50394156 + MIR SINE MIR 37 260 -2 571 279 139 0 chr1 231800600 231800772 -50392892 + MER91A DNA MER1_type 1 196 0 237 300 21 29 chr1 231800908 231801048 -50392616 + CT-rich Low_complexity Low_complexity 1 139 0 256 288 62 12 chr1 231803243 231803323 -50390341 + MIR3 SINE MIR 103 186 -22 450 202 11 0 chr1 231803341 231803430 -50390234 + U13 snRNA snRNA 6 95 -9 2204 95 3 30 chr1 231803484 231803789 -50389875 + AluSq SINE Alu 1 297 -16 514 218 8 68 chr1 231804081 231804214 -50389450 - MER5B DNA MER1_type -17 161 37 811 176 0 0 chr1 231804215 231804340 -50389324 + FLAM_C SINE Alu 1 125 -18 241 274 0 0 chr1 231804343 231804394 -50389270 - MER5B DNA MER1_type -127 51 1 521 278 16 16 chr1 231804460 231804586 -50389078 + MIR SINE MIR 23 148 -60 338 265 164 48 chr1 231804723 231804912 -50388752 + L3 LINE CR1 1354 1564 -13 396 302 50 36 chr1 231805251 231805390 -50388274 - MIR3 SINE MIR -13 195 55 680 324 25 33 chr1 231805427 231805671 -50387993 - MIR SINE MIR -16 246 5 459 282 260 6 chr1 231806235 231806416 -50387248 + MIR SINE MIR 5 231 -31 193 313 0 30 chr1 231808298 231808365 -50385299 + L2 LINE L2 3240 3304 -9 496 254 103 24 chr1 231809477 231809642 -50384022 + MIR SINE MIR 20 197 -65 1783 162 6 37 chr1 231809759 231810080 -50383584 - AluJb SINE Alu -1 311 1 2357 84 3 13 chr1 231810085 231810394 -50383270 - AluSg SINE Alu -4 306 1 485 281 92 63 chr1 231810419 231810547 -50383117 - L2 LINE L2 -230 3042 2919 1981 117 67 79 chr1 231810547 231810950 -50382714 - MER48 LTR ERV1 0 398 1 485 281 92 63 chr1 231810950 231811004 -50382660 - L2 LINE L2 -353 2919 2868 451 0 34 0 chr1 231811004 231811063 -50382601 + (TG)n Simple_repeat Simple_repeat 2 62 0 485 281 92 63 chr1 231811063 231811416 -50382248 - L2 LINE L2 -404 2868 2496 * 652 265 45 65 chr1 231811398 231811598 -50382066 + MIR SINE MIR 29 224 -38 2292 113 0 3 chr1 231811762 231812062 -50381602 + AluSx SINE Alu 1 299 -13 322 309 91 12 chr1 231812591 231812756 -50380908 - MIR SINE MIR -54 208 31 809 239 68 10 chr1 231813796 231814001 -50379663 - MIR SINE MIR -41 221 5 515 270 49 1 chr1 231814011 231814150 -50379514 + MIR3 SINE MIR 19 163 -45 679 246 164 39 chr1 231814545 231814777 -50378887 - MIR SINE MIR 0 262 2 277 276 115 57 chr1 231815122 231815314 -50378350 - MIR SINE MIR -2 260 58 2203 92 0 7 chr1 231815612 231815926 -50377738 - AluSg SINE Alu 0 312 1 404 164 0 0 chr1 231815931 231815992 -50377672 + MER5A DNA MER1_type 129 189 0 1074 232 93 43 chr1 231816012 231816447 -50377217 - MLT1C LTR MaLR -1 466 1 779 156 6 0 chr1 231817568 231817747 -50375917 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 794 209 5 47 chr1 231818237 231818428 -50375236 - AluYb8 SINE Alu -134 184 2 695 164 22 37 chr1 231818963 231819097 -50374567 + FLAM_C SINE Alu 2 133 0 565 132 38 0 chr1 231819811 231819917 -50373747 - L1ME4a LINE L1 -31 6090 5981 4959 165 23 67 chr1 231820066 231820415 -50373249 - L1MB7 LINE L1 -19 6165 5802 2464 93 3 0 chr1 231820415 231820726 -50372938 - AluSx SINE Alu 0 312 1 4959 165 23 67 chr1 231820726 231822416 -50371248 - L1MB7 LINE L1 -382 5802 4232 1748 324 88 48 chr1 231822497 231823740 -50369924 - L1 LINE L1 -1498 4648 3356 727 272 14 39 chr1 231823874 231824153 -50369511 - L1MEc LINE L1 -6013 383 112 2009 141 34 0 chr1 231824222 231824520 -50369144 - AluSx SINE Alu -2 310 3 1924 126 50 0 chr1 231824524 231824801 -50368863 - AluSg SINE Alu -19 291 1 521 245 32 63 chr1 231824804 231825151 -50368513 - HAL1b LINE L1 -674 674 339 198 0 0 0 chr1 231825262 231825284 -50368380 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7569 37 0 0 chr1 231825284 231826216 -50367448 - L1PA3 LINE L1 -18 6137 5206 6189 31 5 3 chr1 231826316 231827693 -50365971 - L1PA3 LINE L1 -151 6004 4625 307 290 71 45 chr1 231827737 231827892 -50365772 - HAL1 LINE L1 -1262 1245 1087 414 0 0 0 chr1 231828018 231828064 -50365600 + (TTTTA)n Simple_repeat Simple_repeat 5 50 0 2215 108 0 3 chr1 231828209 231828506 -50365158 - AluSx SINE Alu -16 296 1 231 152 0 0 chr1 231829098 231829144 -50364520 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 313 287 104 9 chr1 231830684 231830799 -50362865 + MIR SINE MIR 20 145 -117 22 0 0 0 chr1 231831186 231831208 -50362456 + AT_rich Low_complexity Low_complexity 1 22 0 210 348 34 17 chr1 231831383 231831501 -50362163 - MIR3 SINE MIR -4 204 85 249 352 57 23 chr1 231832025 231832113 -50361551 + L2 LINE L2 3141 3231 -41 410 141 0 0 chr1 231832157 231832221 -50361443 - Charlie5 DNA MER1_type -2515 97 34 431 302 50 22 chr1 231832632 231832811 -50360853 + MIR SINE MIR 78 261 -1 264 306 65 9 chr1 231832837 231832945 -50360719 + L2 LINE L2 3151 3264 -8 436 212 35 44 chr1 231833888 231833986 -50359678 + MER45 DNA AcHobo 1 99 -79 1974 149 3 3 chr1 231833986 231834288 -50359376 - AluJo SINE Alu -10 302 1 436 212 35 44 chr1 231834288 231834302 -50359362 + MER45 DNA AcHobo 99 112 -66 2401 97 3 0 chr1 231835312 231835623 -50358041 - AluSp SINE Alu 0 313 2 403 242 212 8 chr1 231835623 231835755 -50357909 + MIR3 SINE MIR 43 201 -7 2422 82 3 7 chr1 231836607 231836912 -50356752 + AluSq SINE Alu 1 304 -9 312 121 121 0 chr1 231837184 231837250 -50356414 + MER53 DNA DNA 94 167 -22 394 139 89 30 chr1 231837250 231837351 -50356313 - MER53 DNA DNA -78 111 5 549 286 169 39 chr1 231838094 231838325 -50355339 + MIR SINE MIR 2 262 0 2469 76 7 0 chr1 231838534 231838838 -50354826 - AluSp SINE Alu -7 306 1 224 306 69 0 chr1 231839346 231839418 -50354246 - L2 LINE L2 -3 3269 3193 649 165 140 67 chr1 231839632 231839796 -50353868 - MER5A DNA MER1_type 0 189 14 652 135 0 0 chr1 231841101 231841197 -50352467 + AluSg/x SINE Alu 208 303 -9 233 217 186 54 chr1 231841688 231841817 -50351847 + MIR SINE MIR 77 222 -40 458 296 173 22 chr1 231842753 231843443 -50350221 - L2 LINE L2 -86 3227 2447 826 231 58 20 chr1 231844462 231844803 -50348861 - HAL1b LINE L1 -785 563 111 300 276 95 0 chr1 231845258 231845363 -50348301 + L2 LINE L2 2950 3064 -208 214 255 28 117 chr1 231846197 231846342 -50347322 + L3b LINE CR1 1137 1268 -315 336 315 0 0 chr1 231847341 231847433 -50346231 - MIR3 SINE MIR -52 156 65 591 270 71 25 chr1 231848022 231848218 -50345446 + MIR SINE MIR 24 228 -34 455 237 9 9 chr1 231848939 231849053 -50344611 + MIR SINE MIR 31 144 -118 484 246 136 45 chr1 231850486 231850685 -50342979 + MIR SINE MIR 40 256 -6 1708 186 59 46 chr1 231850839 231851295 -50342369 - MLT1C LTR MaLR 0 467 6 449 193 91 8 chr1 231851532 231851653 -50342011 - MIR SINE MIR -62 146 38 410 270 8 32 chr1 231852265 231852391 -50341273 - L2 LINE L2 0 3313 3191 2831 254 131 12 chr1 231852443 231853545 -50340119 + L2 LINE L2 2090 3309 -4 355 274 38 19 chr1 231853553 231853659 -50340005 + MIR3 SINE MIR 76 183 -25 205 224 0 20 chr1 231853673 231853722 -50339942 + L2 LINE L2 2230 2277 -1037 424 343 185 18 chr1 231854051 231854500 -50339164 + L3 LINE CR1 1052 1575 -2 382 245 161 29 chr1 231855552 231855672 -50337992 + MIR3 SINE MIR 3 158 -50 2381 93 30 0 chr1 231855672 231855974 -50337690 + AluSp SINE Alu 1 311 -2 382 245 161 29 chr1 231855974 231856026 -50337638 + MIR3 SINE MIR 158 202 -6 859 234 19 5 chr1 231856728 231856937 -50336727 + MIR SINE MIR 30 241 -21 295 292 53 47 chr1 231857188 231857359 -50336305 - L2 LINE L2 -466 2848 2677 278 292 0 0 chr1 231857355 231857420 -50336244 + MIR SINE MIR 9 73 -189 * 404 239 106 39 chr1 231857423 231857712 -50335952 - MLT1J2 LTR MaLR -3 443 136 945 192 56 0 chr1 231857785 231857983 -50335681 + MER3 DNA MER1_type 1 209 0 689 229 43 32 chr1 231858025 231858213 -50335451 + MIR SINE MIR 63 252 -10 443 236 194 0 chr1 231859242 231859407 -50334257 - L2 LINE L2 0 3313 3117 966 247 178 32 chr1 231859427 231859900 -50333764 - MLT1H1 LTR MaLR -13 542 1 648 237 45 0 chr1 231859921 231860077 -50333587 - L2 LINE L2 -230 3083 2921 2473 89 0 0 chr1 231860127 231860431 -50333233 + AluSx SINE Alu 1 304 -8 405 0 0 0 chr1 231860952 231860997 -50332667 + (TG)n Simple_repeat Simple_repeat 1 45 0 372 296 103 0 chr1 231861831 231862024 -50331640 - L1ME LINE L1 -453 5668 5457 246 154 0 77 chr1 231862022 231862100 -50331564 - L1ME4a LINE L1 -4 6117 6046 * 2433 71 0 3 chr1 231863608 231863902 -50329762 - AluSc SINE Alu -16 293 1 2225 139 0 0 chr1 231864059 231864361 -50329303 + AluSx SINE Alu 1 302 -10 2029 143 13 19 chr1 231865452 231865766 -50327898 + AluJb SINE Alu 1 312 0 2391 89 0 7 chr1 231866815 231867118 -50326546 + AluSq SINE Alu 1 301 -12 692 93 0 47 chr1 231867118 231867225 -50326439 + AluSc SINE Alu 132 233 -76 272 279 70 0 chr1 231867321 231867407 -50326257 - MIR SINE MIR -56 206 115 2505 85 0 0 chr1 231867621 231867927 -50325737 - AluSx SINE Alu -6 306 1 214 309 64 36 chr1 231868765 231868875 -50324789 + L2 LINE L2 3200 3312 -1 400 303 0 0 chr1 231869853 231869962 -50323702 + MIR SINE MIR 39 147 -115 683 266 11 6 chr1 231870205 231870382 -50323282 + MIR3 SINE MIR 14 191 -17 320 184 35 123 chr1 231872984 231873014 -50320650 - MIR3 SINE MIR -18 190 159 341 284 148 12 chr1 231873014 231873183 -50320481 + MER91A DNA MER1_type 5 196 0 320 184 35 123 chr1 231873183 231873266 -50320398 - MIR3 SINE MIR -49 159 87 328 245 110 19 chr1 231873363 231873511 -50320153 - MIR SINE MIR -67 141 17 204 200 100 0 chr1 231873865 231873915 -50319749 + L2 LINE L2 3257 3311 -2 351 291 6 76 chr1 231876353 231876459 -50317205 + MIR SINE MIR 48 139 -123 2279 119 0 6 chr1 231876459 231876770 -50316894 + AluSx SINE Alu 1 309 -3 351 291 6 76 chr1 231876770 231876835 -50316829 + MIR SINE MIR 139 207 -55 2511 58 3 0 chr1 231878028 231878323 -50315341 + AluY SINE Alu 1 296 -15 251 318 15 0 chr1 231878337 231878403 -50315261 - L3 LINE CR1 -16 1561 1495 549 309 126 17 chr1 231878528 231878758 -50314906 + MIR SINE MIR 8 262 0 716 188 12 12 chr1 231878783 231878953 -50314711 - L1MA4 LINE L1 -1 6299 6130 911 299 14 76 chr1 231879127 231879549 -50314115 - L3 LINE CR1 -155 1422 1027 327 308 168 29 chr1 231880327 231880535 -50313129 - L3b LINE CR1 -6 1577 1341 285 252 140 46 chr1 231881070 231881210 -50312454 + L1ME4a LINE L1 5762 5887 -234 1671 166 86 77 chr1 231881210 231881638 -50312026 - MSTB1 LTR MaLR 0 432 1 285 252 140 46 chr1 231881638 231881826 -50311838 + L1ME4a LINE L1 5887 6121 0 2108 140 0 19 chr1 231882413 231882727 -50310937 - AluSx SINE Alu -4 308 1 180 308 58 0 chr1 231882879 231882931 -50310733 + L2 LINE L2 3136 3190 -82 224 229 21 0 chr1 231884293 231884341 -50309323 + CT-rich Low_complexity Low_complexity 4 52 0 434 244 67 7 chr1 231884752 231884887 -50308777 - MER103 DNA DNA -12 154 12 205 296 0 0 chr1 231887365 231887453 -50306211 + T-rich Low_complexity Low_complexity 1 88 0 2558 63 0 19 chr1 231887962 231888278 -50305386 + AluY SINE Alu 1 310 -1 1011 261 110 18 chr1 231889113 231889557 -50304107 - L1MC4a LINE L1 -1712 6096 5612 299 333 0 44 chr1 231890080 231890194 -50303470 + L2 LINE L2 3200 3308 -5 1888 130 60 17 chr1 231890211 231890510 -50303154 + AluJb SINE Alu 1 312 0 1894 62 8 12 chr1 231890611 231890881 -50302783 - AluY SINE Alu 0 325 57 937 274 67 6 chr1 231891067 231891532 -50302132 + MLT1K LTR MaLR 29 580 -8 1706 197 0 3 chr1 231891646 231891930 -50301734 - AluJb SINE Alu -29 283 1 324 331 87 0 chr1 231892185 231892312 -50301352 - MIR3 SINE MIR 0 208 71 2446 103 0 0 chr1 231892338 231892650 -50301014 + AluSq SINE Alu 1 312 -1 506 242 85 13 chr1 231892670 231892823 -50300841 + MIR SINE MIR 29 192 -70 2360 110 0 0 chr1 231892834 231893125 -50300539 + AluSx SINE Alu 1 291 -21 580 297 48 24 chr1 231894188 231894397 -50299267 - MIR SINE MIR -33 229 16 792 294 114 38 chr1 231894590 231895180 -50298484 - L2 LINE L2 -123 3190 2546 478 303 144 16 chr1 231895298 231895663 -50298001 + MLT1L LTR MaLR 170 615 0 371 261 11 11 chr1 231896335 231896423 -50297241 + L2 LINE L2 3184 3271 -1 21 0 0 0 chr1 231896828 231896849 -50296815 + AT_rich Low_complexity Low_complexity 1 21 0 2976 0 0 0 chr1 231897707 231898016 -50295648 + AluYa5 SINE Alu 1 309 -2 1356 102 6 0 chr1 231898016 231898193 -50295471 + AluSg/x SINE Alu 134 311 -1 2337 85 0 7 chr1 231898208 231898503 -50295161 + AluSg SINE Alu 1 293 -17 451 330 80 5 chr1 231898513 231898725 -50294939 - MIR SINE MIR -7 255 28 192 268 0 0 chr1 231898887 231898928 -50294736 + L2 LINE L2 3211 3251 -21 194 109 16 78 chr1 231899905 231899969 -50293695 + (TCTCCC)n Simple_repeat Simple_repeat 6 65 0 428 278 30 15 chr1 231900893 231901026 -50292638 + MIR SINE MIR 20 154 -108 1541 291 119 43 chr1 231901026 231901109 -50292555 - L2 LINE L2 -12 3260 3185 2170 131 7 0 chr1 231901109 231901447 -50292217 + AluSx SINE Alu 3 312 0 1541 291 119 43 chr1 231901447 231902601 -50291063 - L2 LINE L2 -87 3185 1932 527 282 53 32 chr1 231903445 231903633 -50290031 + MIR3 SINE MIR 15 206 -2 612 303 16 16 chr1 231904604 231904792 -50288872 - MER5A DNA MER1_type 0 189 2 385 241 88 8 chr1 231904890 231905020 -50288644 + MIR SINE MIR 118 257 -5 576 177 17 0 chr1 231905341 231905516 -50288148 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 239 217 0 43 chr1 231905518 231905587 -50288077 + GA-rich Low_complexity Low_complexity 3 68 0 812 164 20 0 chr1 231905591 231905904 -50287760 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 252 0 0 0 chr1 231906883 231906911 -50286753 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1859 52 9 13 chr1 231906921 231907153 -50286511 - AluY SINE Alu -24 287 57 980 251 74 10 chr1 231907339 231907783 -50285881 + MLT1K LTR MaLR 29 559 -29 1666 197 0 3 chr1 231907918 231908202 -50285462 - AluJb SINE Alu -29 283 1 286 331 87 0 chr1 231908457 231908584 -50285080 - MIR3 SINE MIR 0 208 71 2413 98 0 0 chr1 231908610 231908917 -50284747 + AluSq SINE Alu 1 307 -6 495 235 87 13 chr1 231908942 231909091 -50284573 + MIR SINE MIR 29 188 -74 2337 110 0 0 chr1 231909106 231909397 -50284267 + AluSx SINE Alu 1 291 -21 523 297 48 24 chr1 231910460 231910669 -50282995 - MIR SINE MIR -33 229 16 746 291 97 35 chr1 231910862 231911452 -50282212 - L2 LINE L2 -123 3190 2546 495 290 181 33 chr1 231911570 231911935 -50281729 + MLT1L LTR MaLR 170 615 0 371 261 11 11 chr1 231912607 231912695 -50280969 + L2 LINE L2 3184 3271 -1 21 0 0 0 chr1 231913100 231913121 -50280543 + AT_rich Low_complexity Low_complexity 1 21 0 2498 51 3 3 chr1 231913979 231914290 -50279374 + AluYa5 SINE Alu 1 311 0 344 267 77 36 chr1 231915134 231915398 -50278266 - L1MC5 LINE L1 -182 7860 7514 1780 110 26 11 chr1 231915624 231915897 -50277767 + L1PA13 LINE L1 5886 6162 -1 1302 136 47 0 chr1 231915918 231916132 -50277532 + L1MB3 LINE L1 5959 6182 -1 311 335 158 0 chr1 231916134 231916286 -50277378 - MIR3 SINE MIR -30 178 3 2123 133 0 0 chr1 231917271 231917564 -50276100 - AluSx SINE Alu -19 293 1 1103 159 0 0 chr1 231917564 231917734 -50275930 - AluJb SINE Alu -2 310 141 257 261 126 18 chr1 231917902 231918013 -50275651 + L2 LINE L2 3180 3302 -11 2368 73 0 0 chr1 231918304 231918593 -50275071 - AluSg1 SINE Alu -20 289 1 1020 276 111 62 chr1 231918608 231919087 -50274577 - L1M4 LINE L1 -908 5238 4784 554 101 0 0 chr1 231919087 231919166 -50274498 - L1MA9 LINE L1 0 6312 6234 1020 276 111 62 chr1 231919166 231919572 -50274092 - L1M4 LINE L1 -1362 4784 4287 2097 136 0 3 chr1 231919572 231919873 -50273791 - AluSp SINE Alu -13 300 1 1020 276 111 62 chr1 231919873 231920075 -50273589 - L1M4 LINE L1 -1859 4287 4096 1007 155 0 59 chr1 231920079 231920266 -50273398 + AluJb SINE Alu 137 312 0 504 256 131 31 chr1 231920315 231920764 -50272900 - L1M4 LINE L1 -2413 3733 3240 491 122 0 0 chr1 231920900 231920974 -50272690 + AluS SINE Alu 229 302 -8 711 108 50 8 chr1 231920986 231921106 -50272558 - MER2 DNA MER2_type -99 246 122 781 147 8 8 chr1 231921109 231921238 -50272426 + FLAM_C SINE Alu 1 129 -4 2048 127 0 0 chr1 231921279 231921582 -50272082 + AluSx SINE Alu 1 303 0 2294 121 0 0 chr1 231921583 231921890 -50271774 + AluSx SINE Alu 1 307 -5 821 161 15 0 chr1 231921926 231922063 -50271601 - MER2 DNA MER2_type -206 139 1 2943 3 0 0 chr1 231922648 231922958 -50270706 + AluYa5 SINE Alu 1 310 -1 875 283 116 22 chr1 231923544 231923905 -50269759 + L3 LINE CR1 1142 1536 -41 2600 69 0 0 chr1 231923905 231924210 -50269454 - AluSx SINE Alu -7 305 1 237 78 20 39 chr1 231924513 231924564 -50269100 + (TTA)n Simple_repeat Simple_repeat 2 51 0 337 290 11 11 chr1 231925180 231925273 -50268391 + GA-rich Low_complexity Low_complexity 4 96 0 24 67 0 0 chr1 231925409 231925454 -50268210 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 231925501 231925536 -50268128 + AT_rich Low_complexity Low_complexity 1 35 0 233 98 0 0 chr1 231925596 231925637 -50268027 - AluSq SINE Alu 0 302 262 1146 69 0 0 chr1 231925637 231925781 -50267883 - AluSq SINE Alu -83 230 87 1829 161 37 3 chr1 231925809 231926108 -50267556 + AluJb SINE Alu 1 309 -3 22 35 0 0 chr1 231926296 231926325 -50267339 + AT_rich Low_complexity Low_complexity 1 29 0 2017 96 85 0 chr1 231926553 231926825 -50266839 + AluSg SINE Alu 1 295 -15 1395 173 132 0 chr1 231926856 231926977 -50266687 + AluJo SINE Alu 1 105 -207 198 0 0 0 chr1 231926977 231926999 -50266665 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1395 173 132 0 chr1 231926999 231927143 -50266521 + AluJo SINE Alu 105 301 -11 216 0 0 0 chr1 231927355 231927379 -50266285 + (TA)n Simple_repeat Simple_repeat 1 24 0 2176 119 20 0 chr1 231927615 231927908 -50265756 - AluSx SINE Alu -13 299 1 1981 145 0 0 chr1 231928468 231928776 -50264888 + AluJb SINE Alu 1 308 0 1926 141 10 3 chr1 231928905 231929204 -50264460 + AluJb SINE Alu 1 301 -11 473 257 90 7 chr1 231929291 231929435 -50264229 - MIR SINE MIR -13 249 94 404 256 122 56 chr1 231931631 231931811 -50261853 - MIR SINE MIR -2 260 69 2281 115 0 0 chr1 231931959 231932271 -50261393 - AluSx SINE Alu 0 312 1 264 30 0 0 chr1 231932559 231932592 -50261072 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1938 144 0 14 chr1 231932604 231932889 -50260775 - AluSx SINE Alu -31 281 1 23 33 0 0 chr1 231933597 231933627 -50260037 + AT_rich Low_complexity Low_complexity 1 30 0 2319 106 0 3 chr1 231933957 231934259 -50259405 + AluSg SINE Alu 1 301 -9 396 0 0 0 chr1 231934937 231934981 -50258683 + (TG)n Simple_repeat Simple_repeat 1 44 0 1605 191 0 11 chr1 231934981 231935263 -50258401 - AluJb SINE Alu -33 279 1 340 283 57 19 chr1 231935447 231935467 -50258197 - L1MA10 LINE L1 0 6334 6315 801 227 74 15 chr1 231935467 231935670 -50257994 - L1ME1 LINE L1 -8 6158 5944 1544 161 12 0 chr1 231935680 231935928 -50257736 + AluJo SINE Alu 42 292 -20 1203 109 6 0 chr1 231936002 231936167 -50257497 - AluSx SINE Alu -15 295 130 1591 77 0 10 chr1 231936168 231936375 -50257289 - AluY SINE Alu -4 307 103 297 28 0 0 chr1 231936377 231936413 -50257251 + AluY SINE Alu 51 86 -214 1222 78 0 0 chr1 231936413 231936555 -50257109 - AluSx SINE Alu -170 142 1 1578 161 10 65 chr1 231937244 231937536 -50256128 + AluJb SINE Alu 7 282 -30 198 103 0 0 chr1 231937536 231937565 -50256099 + (TAAG)n Simple_repeat Simple_repeat 2 30 0 225 314 14 0 chr1 231937577 231937647 -50256017 + MIR SINE MIR 82 152 -56 2496 132 45 94 chr1 231937780 231938172 -50255492 + MLT1D LTR MaLR 1 362 -143 2079 109 25 0 chr1 231938172 231938456 -50255208 - AluSq SINE Alu -13 300 10 2496 132 45 94 chr1 231938456 231938594 -50255070 + MLT1D LTR MaLR 362 505 0 2420 74 0 0 chr1 231939753 231940049 -50253615 + AluY SINE Alu 3 298 -13 1407 211 120 62 chr1 231940337 231940496 -50253168 - L1MC5 LINE L1 -37 7924 7776 1978 98 59 14 chr1 231940496 231940782 -50252882 - AluSq SINE Alu -14 299 1 1407 211 120 62 chr1 231940782 231940849 -50252815 - L1MC5 LINE L1 -185 7776 7714 1961 101 12 76 chr1 231940849 231941177 -50252487 + AluSx SINE Alu 1 307 -5 1407 211 120 62 chr1 231941177 231941622 -50252042 - L1MC5 LINE L1 -247 7714 7213 2304 101 0 0 chr1 231941773 231942070 -50251594 + AluSq SINE Alu 1 297 -16 2374 74 3 10 chr1 231942332 231942630 -50251034 - AluY SINE Alu -15 296 1 2553 142 47 2 chr1 231942656 231943064 -50250600 - MSTB LTR MaLR 0 426 1 28 0 0 0 chr1 231944129 231944157 -50249507 + AT_rich Low_complexity Low_complexity 1 28 0 1873 172 0 0 chr1 231944260 231944571 -50249093 - AluSx SINE Alu 0 311 1 186 268 93 41 chr1 231944623 231944720 -50248944 - L2 LINE L2 -17 3255 3154 195 338 99 18 chr1 231944751 231944973 -50248691 - L3b LINE CR1 -217 1366 1127 2153 120 7 3 chr1 231945188 231945496 -50248168 - AluSx SINE Alu -3 309 1 1226 206 99 0 chr1 231945885 231946001 -50247663 - AluJo SINE Alu -34 278 175 2463 68 7 0 chr1 231946001 231946310 -50247354 - AluY SINE Alu 0 311 1 1226 206 99 0 chr1 231946310 231946446 -50247218 - AluJo SINE Alu -137 175 1 1217 160 112 34 chr1 231946613 231946882 -50246782 + AluJb SINE Alu 12 301 -11 183 259 151 29 chr1 231946888 231947027 -50246637 - MIR SINE MIR -14 248 93 1556 153 60 0 chr1 231947176 231947424 -50246240 + AluJo SINE Alu 20 282 -30 2465 83 3 0 chr1 231947672 231947974 -50245690 + AluSx SINE Alu 2 304 -8 319 250 0 13 chr1 231948682 231948758 -50244906 + MIR SINE MIR 3 77 -185 493 296 93 26 chr1 231948859 231949112 -50244552 + L2 LINE L2 2784 3069 -244 920 184 44 48 chr1 231949141 231949238 -50244426 - L1ME2 LINE L1 0 6164 6068 2019 200 44 2 chr1 231949238 231949394 -50244270 + MSTB LTR MaLR 3 151 -275 2512 78 0 3 chr1 231949394 231949703 -50243961 - AluSq SINE Alu -5 308 1 2019 200 44 2 chr1 231949703 231949951 -50243713 + MSTB LTR MaLR 151 424 -2 920 184 44 48 chr1 231949951 231950081 -50243583 - L1ME2 LINE L1 -96 6068 5938 1336 196 65 11 chr1 231950173 231950449 -50243215 - AluJo SINE Alu -21 291 1 1919 163 3 0 chr1 231951232 231951526 -50242138 - AluJb SINE Alu -17 295 1 1703 201 57 45 chr1 231951643 231951975 -50241689 - L1ME2 LINE L1 -213 5951 5610 2305 92 3 3 chr1 231951975 231952269 -50241395 - AluSx SINE Alu -18 294 1 1703 201 57 45 chr1 231952269 231952408 -50241256 - L1ME2 LINE L1 -554 5610 5474 667 252 26 61 chr1 231952436 231952749 -50240915 - AluJo SINE Alu 0 302 1 942 121 8 0 chr1 231953177 231953309 -50240355 - FLAM_C SINE Alu 0 133 1 543 194 133 17 chr1 231953310 231953470 -50240194 - L1ME LINE L1 -653 5511 5371 180 0 0 0 chr1 231953470 231953490 -50240174 + (TG)n Simple_repeat Simple_repeat 2 21 0 543 194 133 17 chr1 231953490 231953680 -50239984 - L1ME LINE L1 -793 5371 5136 * 803 140 0 28 chr1 231953647 231953790 -50239874 - L1MD3 LINE L1 -1 7994 7856 2345 89 3 25 chr1 231953843 231954157 -50239507 - AluSx SINE Alu -5 307 1 1734 187 7 0 chr1 231954208 231954508 -50239156 + AluJo SINE Alu 1 302 -10 774 149 6 31 chr1 231954518 231954693 -50238971 + AluJb SINE Alu 3 216 -96 198 174 0 0 chr1 231954802 231954848 -50238816 + A-rich Low_complexity Low_complexity 1 46 0 2247 107 0 3 chr1 231954967 231955266 -50238398 - AluSx SINE Alu -14 298 1 1330 151 6 71 chr1 231955319 231955630 -50238034 - L1ME LINE L1 -981 5165 4875 325 285 133 6 chr1 231955643 231955808 -50237856 - L1ME LINE L1 -2008 4138 3953 269 273 50 33 chr1 231955819 231955940 -50237724 - L1ME3A LINE L1 -7 6163 6041 391 311 148 0 chr1 231956143 231956339 -50237325 + L2 LINE L2 2260 2484 -830 297 258 103 10 chr1 231956336 231956433 -50237231 - L2 LINE L2 -2 3311 3206 * 1971 90 4 11 chr1 231956524 231956790 -50236874 - AluSx SINE Alu -6 306 43 514 67 0 67 chr1 231956790 231956875 -50236789 - AluS SINE Alu -233 79 1 432 345 75 64 chr1 231956879 231956969 -50236695 + L2 LINE L2 2575 2662 -610 2279 114 0 3 chr1 231956969 231957275 -50236389 - AluSx SINE Alu -7 305 1 432 345 75 64 chr1 231957275 231957606 -50236058 + L2 LINE L2 2662 3068 -204 1152 185 130 26 chr1 231957606 231957876 -50235788 - AluJo SINE Alu -4 298 1 432 345 75 64 chr1 231957876 231958083 -50235581 + L2 LINE L2 3068 3271 -1 28 48 0 0 chr1 231958757 231958799 -50234865 + AT_rich Low_complexity Low_complexity 1 42 0 1522 117 31 0 chr1 231958893 231959116 -50234548 - MER30 DNA MER1_type 0 230 1 2278 42 39 7 chr1 231959350 231959633 -50234031 - AluY SINE Alu -18 293 2 2653 23 10 0 chr1 231959864 231960168 -50233496 - AluY SINE Alu -4 307 1 195 42 0 0 chr1 231960275 231960299 -50233365 + (T)n Simple_repeat Simple_repeat 1 24 0 417 345 79 54 chr1 231960412 231960507 -50233157 + L2 LINE L2 1834 1925 -1389 2319 103 0 0 chr1 231960507 231960808 -50232856 - AluSg SINE Alu -9 301 1 417 345 79 54 chr1 231960808 231961266 -50232398 + L2 LINE L2 1925 2401 -913 434 251 67 28 chr1 231961307 231961463 -50232201 - MER5A DNA MER1_type 0 189 1 466 267 9 9 chr1 231961882 231961987 -50231677 - MER5A DNA MER1_type -50 139 35 212 304 108 47 chr1 231962045 231962259 -50231405 + L2 LINE L2 2826 3052 -220 498 33 0 0 chr1 231963428 231963488 -50230176 + (TG)n Simple_repeat Simple_repeat 2 61 0 4400 47 0 0 chr1 231963946 231964481 -50229183 + L1PA5 LINE L1 5615 6149 -5 221 171 0 0 chr1 231964520 231964561 -50229103 + A-rich Low_complexity Low_complexity 1 41 0 2081 132 3 0 chr1 231964645 231964940 -50228724 + AluSx SINE Alu 1 296 -16 2045 155 0 0 chr1 231965492 231965789 -50227875 + AluSx SINE Alu 1 297 -15 354 258 40 16 chr1 231965849 231965973 -50227691 - L1ME3 LINE L1 -306 5856 5730 4360 158 5 4 chr1 231966024 231966784 -50226880 + L1MB7 LINE L1 5416 6176 -8 376 298 185 19 chr1 231966804 231967009 -50226655 - L1ME3 LINE L1 -457 5713 5475 546 219 0 17 chr1 231967640 231967759 -50225905 - MIR3 SINE MIR -13 195 79 186 118 0 0 chr1 231967840 231967874 -50225790 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 401 252 52 15 chr1 231967883 231967977 -50225687 - MER92B LTR ERV1 -37 599 497 2457 70 17 0 chr1 231967977 231968278 -50225386 - AluY SINE Alu -5 306 1 401 252 52 15 chr1 231968278 231968318 -50225346 - MER92B LTR ERV1 -139 497 460 2067 85 44 0 chr1 231968366 231968669 -50224995 - AluYa5 SINE Alu 0 315 1 25 0 0 0 chr1 231970047 231970072 -50223592 + AT_rich Low_complexity Low_complexity 1 25 0 314 179 8 106 chr1 231970189 231970240 -50223424 + L1MB8 LINE L1 4398 4452 -1694 2086 104 0 70 chr1 231970240 231970556 -50223108 - AluSx SINE Alu -18 294 1 314 179 8 106 chr1 231970556 231970627 -50223037 + L1MB8 LINE L1 4452 4508 -1638 363 194 163 0 chr1 231970685 231970783 -50222881 + MIR SINE MIR 149 262 0 327 269 176 10 chr1 231970926 231971238 -50222426 + L1ME LINE L1 4724 5087 -1059 2059 49 12 0 chr1 231971413 231971658 -50222006 + AluY SINE Alu 1 248 -63 2270 79 35 0 chr1 231971707 231971997 -50221667 + AluSg SINE Alu 1 300 -10 1849 168 44 7 chr1 231972002 231972413 -50221251 + L1MB8 LINE L1 4653 5078 -1068 360 169 44 110 chr1 231972455 231972548 -50221116 + L1MB8 LINE L1 5065 5148 -998 1514 197 17 10 chr1 231972548 231972837 -50220827 - AluJo SINE Alu -13 299 9 360 169 44 110 chr1 231972837 231972879 -50220785 + L1MB8 LINE L1 5148 5191 -955 1092 235 8 12 chr1 231972879 231973126 -50220538 + AluJo SINE Alu 50 295 -17 2103 155 45 29 chr1 231973127 231973599 -50220065 + L1MB8 LINE L1 5195 5678 -500 1922 165 30 60 chr1 231973768 231974145 -50219519 + L1MB8 LINE L1 5647 6007 -171 1958 129 10 29 chr1 231974145 231974455 -50219209 - AluJb SINE Alu -5 307 4 1922 165 30 60 chr1 231974455 231974574 -50219090 + L1MB8 LINE L1 6007 6128 -50 1786 186 0 7 chr1 231974582 231974878 -50218786 - AluSx SINE Alu -18 294 1 359 131 0 0 chr1 231974881 231974942 -50218722 + L1MB8 LINE L1 6112 6172 -6 325 263 158 24 chr1 231975112 231975359 -50218305 + L1ME LINE L1 5494 5773 -348 896 139 0 0 chr1 231975411 231975540 -50218124 + FLAM_C SINE Alu 3 131 -2 1549 117 124 0 chr1 231975687 231975953 -50217711 + AluY SINE Alu 1 299 -2 2325 92 3 0 chr1 231976103 231976463 -50217201 + AluSp SINE Alu 1 361 0 2139 122 30 0 chr1 231976471 231976775 -50216889 + AluSq SINE Alu 1 313 0 436 327 148 39 chr1 231976876 231977738 -50215926 + L2 LINE L2 395 1402 -1912 186 313 0 0 chr1 231977740 231977788 -50215876 + L2 LINE L2 1839 1886 -1428 525 277 87 16 chr1 231977857 231978041 -50215623 + MIR SINE MIR 4 200 -62 220 278 0 0 chr1 231978146 231978200 -50215464 + (CTA)n Simple_repeat Simple_repeat 2 55 0 1235 177 0 26 chr1 231978231 231978457 -50215207 - AluJb SINE Alu -6 306 87 525 320 181 23 chr1 231978474 231979124 -50214540 + L2 LINE L2 1460 2212 -1102 1102 146 6 0 chr1 231979543 231979708 -50213956 - AluSg/x SINE Alu -13 297 132 1406 201 58 4 chr1 231980858 231981132 -50212532 - AluJo SINE Alu -18 294 6 2375 95 0 0 chr1 231981132 231981426 -50212238 - AluY SINE Alu -17 294 1 2234 99 19 39 chr1 231981475 231981839 -50211825 - L1PA16 LINE L1 -1 6165 5809 432 358 109 49 chr1 231981902 231982251 -50211413 - L2 LINE L2 -6 3266 2897 837 284 0 22 chr1 231982279 231982508 -50211156 - MIR SINE MIR -1 261 38 1253 212 71 3 chr1 231982521 231982804 -50210860 + MER58B DNA MER1_type 1 302 -39 1239 204 3 71 chr1 231982809 231983103 -50210561 - AluJo SINE Alu -1 311 38 237 150 0 0 chr1 231983103 231983143 -50210521 + MER58B DNA MER1_type 293 332 -9 383 151 14 0 chr1 231984412 231984490 -50209174 + L1ME2 LINE L1 6084 6165 -1 635 215 39 107 chr1 231984719 231984952 -50208712 - MER102b DNA MER1_type -23 318 102 433 410 35 12 chr1 231985527 231985866 -50207798 + L2 LINE L2 2511 2857 -457 234 349 67 72 chr1 231985971 231986104 -50207560 + L2 LINE L2 2888 3020 -252 2111 94 9 38 chr1 231986104 231986424 -50207240 - AluY SINE Alu 0 311 1 234 349 67 72 chr1 231986424 231986677 -50206987 + L2 LINE L2 3020 3272 0 861 245 59 28 chr1 231987142 231987395 -50206269 - MIR SINE MIR 0 262 2 287 281 49 24 chr1 231988207 231988289 -50205375 + MIR SINE MIR 63 146 -116 1495 183 71 16 chr1 231989451 231989773 -50203891 - MER2 DNA MER2_type -5 340 1 509 176 162 37 chr1 231990166 231990302 -50203362 - MLT1D LTR MaLR -2 503 351 1250 133 26 139 chr1 231990310 231990459 -50203205 - L1M3 LINE L1 -375 5796 5705 1968 152 26 3 chr1 231990459 231990761 -50202903 - AluSx SINE Alu -2 310 2 1250 133 26 139 chr1 231990761 231990950 -50202714 - L1M3 LINE L1 -466 5705 5496 2306 89 3 3 chr1 231990950 231991243 -50202421 - AluSc SINE Alu -16 293 1 857 155 13 0 chr1 231991277 231991432 -50202232 - FRAM SINE Alu 0 40 1 1289 130 18 9 chr1 231991435 231991694 -50201970 - L1M3 LINE L1 -696 5487 5226 716 117 29 0 chr1 231991731 231991834 -50201830 - U6 snRNA snRNA 0 107 2 287 215 0 0 chr1 231991835 231991900 -50201764 - L1M3 LINE L1 -909 5237 5173 284 273 52 0 chr1 231992490 231992567 -50201097 + L3b LINE CR1 1303 1383 -200 458 266 138 27 chr1 231993278 231993466 -50200198 - MIR SINE MIR -35 227 19 700 138 83 0 chr1 231993479 231993588 -50200076 - FLAM_C SINE Alu -15 118 1 566 231 17 0 chr1 231993794 231993911 -50199753 + FLAM_A SINE Alu 2 120 -13 23 54 0 0 chr1 231994424 231994461 -50199203 + AT_rich Low_complexity Low_complexity 1 37 0 4052 163 140 79 chr1 231995136 231995552 -50198112 - Charlie1a DNA MER1_type -1306 1455 1066 2091 126 14 0 chr1 231995552 231995845 -50197819 - AluSx SINE Alu -15 297 1 4052 163 140 79 chr1 231995845 231996400 -50197264 - Charlie1a DNA MER1_type -1695 1066 383 1910 159 30 0 chr1 231996400 231996702 -50196962 - AluJb SINE Alu -1 311 1 4052 163 140 79 chr1 231996702 231997028 -50196636 - Charlie1a DNA MER1_type -2378 383 78 475 93 0 67 chr1 231997589 231997664 -50196000 - FLAM_A SINE Alu -18 124 55 2372 80 7 0 chr1 231997868 231998169 -50195495 + AluSp SINE Alu 1 303 -10 434 169 13 13 chr1 231998314 231998391 -50195273 + L2 LINE L2 3237 3313 0 224 240 0 0 chr1 231999147 231999197 -50194467 + L2 LINE L2 3264 3313 0 2379 96 129 26 chr1 232001401 232001819 -50191845 - MER4C LTR ERV1 -4 461 1 241 352 62 33 chr1 232001943 232002153 -50191511 - L2 LINE L2 -191 3081 2866 189 77 0 0 chr1 232002172 232002198 -50191466 - MIR SINE MIR -10 252 227 218 235 137 0 chr1 232002484 232002535 -50191129 - L2 LINE L2 -10 3262 3205 1794 128 80 0 chr1 232002588 232002862 -50190802 - AluSx SINE Alu -16 296 1 23 0 0 0 chr1 232002914 232002937 -50190727 + AT_rich Low_complexity Low_complexity 1 23 0 2170 121 0 10 chr1 232002967 232003274 -50190390 + AluSx SINE Alu 1 304 -8 183 219 0 0 chr1 232003286 232003327 -50190337 + L2 LINE L2 3232 3272 0 393 259 88 51 chr1 232003415 232003633 -50190031 + MIR SINE MIR 1 216 -46 21 36 0 0 chr1 232003710 232003738 -50189926 + AT_rich Low_complexity Low_complexity 1 28 0 486 248 68 0 chr1 232005077 232005210 -50188454 + MER58B DNA MER1_type 197 338 -3 1991 137 0 3 chr1 232005286 232005597 -50188067 - AluSx SINE Alu 0 310 1 2199 123 3 0 chr1 232005932 232006234 -50187430 - AluSx SINE Alu -8 304 2 465 286 30 48 chr1 232006728 232006942 -50186722 + MIR SINE MIR 8 216 -46 21 0 0 0 chr1 232008271 232008292 -50185372 + AT_rich Low_complexity Low_complexity 1 21 0 2281 100 0 19 chr1 232009330 232009641 -50184023 - AluY SINE Alu -6 305 1 400 121 22 77 chr1 232009663 232009754 -50183910 - FLAM SINE Alu -10 133 48 301 171 0 26 chr1 232009916 232009985 -50183679 - Alu SINE Alu -255 44 1 299 183 122 0 chr1 232011791 232011873 -50181791 - L1MD3 LINE L1 -1 7994 7903 528 294 34 0 chr1 232012783 232012902 -50180762 + L2 LINE L2 3144 3266 -6 481 125 102 11 chr1 232013567 232013655 -50180009 + FLAM_C SINE Alu 30 125 -18 2182 119 7 0 chr1 232013965 232014260 -50179404 - AluSx SINE Alu -15 297 1 249 303 113 107 chr1 232015000 232015337 -50178327 + L2 LINE L2 2605 2941 -331 290 219 0 110 chr1 232015572 232015654 -50178010 + L2 LINE L2 3192 3264 -8 426 262 152 43 chr1 232015773 232015983 -50177681 - MIR SINE MIR 0 262 30 186 295 13 26 chr1 232015999 232016077 -50177587 - L2 LINE L2 -1078 2236 2160 1569 196 40 38 chr1 232016573 232016946 -50176718 - MLT1A2 LTR MaLR 0 374 1 1851 152 0 21 chr1 232017675 232017990 -50175674 + AluJb SINE Alu 5 313 0 22 0 0 0 chr1 232018166 232018188 -50175476 + AT_rich Low_complexity Low_complexity 1 22 0 207 105 0 26 chr1 232018543 232018581 -50175083 + (TTTTTG)n Simple_repeat Simple_repeat 5 41 0 1599 189 10 10 chr1 232018743 232019049 -50174615 + AluJo SINE Alu 1 306 -6 355 322 20 32 chr1 232019058 232019227 -50174437 - MIR3 SINE MIR -41 167 28 241 325 33 83 chr1 232022603 232022723 -50170941 + L2 LINE L2 2946 3059 -213 416 308 9 0 chr1 232022754 232022861 -50170803 + L2 LINE L2 3161 3268 -4 22 0 0 0 chr1 232023004 232023026 -50170638 + AT_rich Low_complexity Low_complexity 1 22 0 674 195 0 16 chr1 232023026 232023154 -50170510 - FLAM_C SINE Alu -7 126 1 419 210 193 59 chr1 232023154 232023273 -50170391 + MER5A DNA MER1_type 49 183 -6 2145 115 34 7 chr1 232023545 232023841 -50169823 - AluSx SINE Alu -8 304 1 24 53 0 0 chr1 232024411 232024449 -50169215 + AT_rich Low_complexity Low_complexity 1 38 0 272 380 70 36 chr1 232025948 232026277 -50167387 - L3b LINE CR1 -131 1452 1113 213 295 95 32 chr1 232027792 232027887 -50165777 - MIR SINE MIR -57 205 105 236 128 77 51 chr1 232027891 232027906 -50165758 + (TTATA)n Simple_repeat Simple_repeat 3 16 -66 216 0 0 0 chr1 232027906 232027930 -50165734 + (TC)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr1 232027929 232027950 -50165714 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 236 128 77 51 chr1 232027930 232027950 -50165714 + (TTATA)n Simple_repeat Simple_repeat 16 34 -48 2175 106 0 20 chr1 232027950 232028251 -50165413 - AluY SINE Alu -16 295 1 236 128 77 51 chr1 232028251 232028312 -50165352 + (TTATA)n Simple_repeat Simple_repeat 34 82 0 627 243 126 94 chr1 232028408 232028886 -50164778 - MLT1J LTR MaLR -11 500 8 450 204 134 28 chr1 232028891 232029033 -50164631 - MIR SINE MIR -58 204 48 297 356 52 7 chr1 232029076 232029211 -50164453 - MIR SINE MIR -13 249 109 27 29 0 0 chr1 232029697 232029731 -50163933 + AT_rich Low_complexity Low_complexity 1 34 0 2268 85 0 10 chr1 232030973 232031268 -50162396 - AluSc SINE Alu -17 292 1 2473 63 0 0 chr1 232031377 232031678 -50161986 - AluY SINE Alu -10 301 1 183 196 98 39 chr1 232031735 232031786 -50161878 - MIR SINE MIR -101 161 108 295 321 72 59 chr1 232031950 232032171 -50161493 + L3b LINE CR1 1279 1502 -81 6844 124 51 48 chr1 232032299 232032845 -50160819 - L1 LINE L1 -1237 4909 4366 240 0 75 0 chr1 232032845 232032885 -50160779 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 10771 48 4 38 chr1 232032885 232034295 -50159369 - SVA Other Other -23 1363 1 6844 124 51 48 chr1 232034295 232034525 -50159139 - L1 LINE L1 -1780 4366 4138 841 149 0 22 chr1 232034525 232034659 -50159005 - FLAM_C SINE Alu -2 131 1 6844 124 51 48 chr1 232034659 232035263 -50158401 - L1 LINE L1 -2008 4138 3523 217 132 19 19 chr1 232035465 232035518 -50158146 + T-rich Low_complexity Low_complexity 3 55 0 497 325 101 58 chr1 232036108 232036344 -50157320 - L2 LINE L2 0 3313 3089 1516 201 42 0 chr1 232036344 232036627 -50157037 + AluJo SINE Alu 1 295 -17 497 325 101 58 chr1 232036627 232036907 -50156757 - L2 LINE L2 -224 3089 2822 2912 161 18 13 chr1 232036907 232037453 -50156211 - L1MB8 LINE L1 -18 6160 5612 497 325 101 58 chr1 232037453 232037670 -50155994 - L2 LINE L2 -491 2822 2551 2278 123 0 0 chr1 232037679 232037989 -50155675 + AluSx SINE Alu 1 310 -2 289 273 58 65 chr1 232038409 232038548 -50155116 + L1MEd LINE L1 510 647 -5472 368 325 99 35 chr1 232038877 232038960 -50154704 - L2 LINE L2 -7 3306 3230 2183 121 0 10 chr1 232038960 232039273 -50154391 + AluSx SINE Alu 1 310 -2 368 325 99 35 chr1 232039273 232039472 -50154192 - L2 LINE L2 -83 3230 3006 222 353 0 29 chr1 232039872 232039974 -50153690 - L2 LINE L2 -475 2839 2741 358 328 0 23 chr1 232040160 232040288 -50153376 - L2 LINE L2 -475 2839 2715 353 204 157 0 chr1 232040887 232040995 -50152669 + L1ME4a LINE L1 5986 6110 -11 369 333 0 9 chr1 232041298 232041406 -50152258 - MIR SINE MIR -60 148 42 804 144 0 23 chr1 232042771 232042903 -50150761 + FLAM_A SINE Alu 4 132 -1 278 248 85 39 chr1 232042910 232043039 -50150625 + MIR SINE MIR 61 195 -67 234 263 0 18 chr1 232043061 232043118 -50150546 + MIR SINE MIR 157 212 -50 453 168 134 8 chr1 232043768 232043887 -50149777 + L1MB8 LINE L1 6045 6178 0 244 245 0 0 chr1 232045958 232046007 -50147657 + L2 LINE L2 3219 3267 -5 264 313 92 8 chr1 232046280 232046411 -50147253 + MIR3 SINE MIR 30 171 -37 490 329 113 14 chr1 232046734 232046947 -50146717 - MIR SINE MIR -6 256 23 474 335 123 29 chr1 232047760 232048304 -50145360 + L2 LINE L2 1681 2275 -1039 213 172 17 86 chr1 232048307 232048365 -50145299 + MIR SINE MIR 194 247 -15 7632 26 0 0 chr1 232048919 232050148 -50143516 - L1PA4 LINE L1 0 6155 4924 1979 95 81 4 chr1 232050365 232050638 -50143026 + AluSx SINE Alu 1 294 -18 200 343 86 9 chr1 232050801 232050906 -50142758 - L2 LINE L2 -1 3312 3200 589 97 51 0 chr1 232051070 232051185 -50142479 + L1PA13 LINE L1 6026 6160 -1 536 216 36 48 chr1 232051204 232051371 -50142293 + L1ME1 LINE L1 5997 6161 -5 230 235 29 0 chr1 232052186 232052254 -50141410 - L1ME4a LINE L1 -70 6051 5982 1815 166 0 38 chr1 232052305 232052625 -50141039 + AluJo SINE Alu 1 308 -4 246 294 79 75 chr1 232052964 232053444 -50140220 - L1ME4a LINE L1 -2009 5799 5318 247 177 127 13 chr1 232053915 232053994 -50139670 - L1ME LINE L1 -303 5818 5731 594 202 0 9 chr1 232054451 232054565 -50139099 - MER58B DNA MER1_type 0 341 229 530 225 147 0 chr1 232054570 232054699 -50138965 + MER58B DNA MER1_type 192 339 -2 204 206 0 0 chr1 232055414 232055448 -50138216 + polypyrimidine Low_complexity Low_complexity 3 36 0 1875 136 38 7 chr1 232055983 232056270 -50137394 - AluSx SINE Alu -16 296 1 847 188 118 0 chr1 232056392 232056578 -50137086 - MER3 DNA MER1_type 0 209 2 551 314 14 7 chr1 232056699 232056839 -50136825 - MIR3 SINE MIR -21 187 47 180 228 70 35 chr1 232057326 232057383 -50136281 + MIR SINE MIR 90 148 -114 2123 125 0 16 chr1 232057610 232057914 -50135750 + AluSx SINE Alu 1 299 -13 27 73 0 0 chr1 232058035 232058090 -50135574 + AT_rich Low_complexity Low_complexity 1 55 0 2024 115 10 7 chr1 232058094 232058390 -50135274 + AluSx SINE Alu 1 297 -15 598 282 43 73 chr1 232058922 232059156 -50134508 - MIR SINE MIR -32 230 4 754 153 0 8 chr1 232059249 232059373 -50134291 - AluJb SINE Alu 0 312 190 484 174 18 9 chr1 232059839 232060007 -50133657 - MER58B DNA MER1_type -1 340 5 258 237 42 25 chr1 232060994 232061112 -50132552 + L1ME LINE L1 185 304 -5901 845 190 50 17 chr1 232061410 232061589 -50132075 + MER5A DNA MER1_type 4 188 -1 472 258 82 37 chr1 232061697 232062117 -50131547 + L1ME LINE L1 808 1224 -4981 3186 153 84 43 chr1 232062124 232062598 -50131066 + Charlie1 DNA MER1_type 1763 2285 -476 2043 115 32 63 chr1 232062598 232062946 -50130718 - MER1B DNA MER1_type 0 337 1 3186 153 84 43 chr1 232062946 232063280 -50130384 + Charlie1 DNA MER1_type 2285 2604 -157 5200 145 22 23 chr1 232063291 232064967 -50128697 - L1MA6 LINE L1 -7 7712 6034 485 107 0 13 chr1 232064971 232065046 -50128618 - Alu SINE Alu -11 298 225 634 88 0 0 chr1 232065047 232065149 -50128515 + BaEV-int LTR ERV1 1613 1714 -4935 674 204 253 0 chr1 232065189 232065414 -50128250 - LTR10A LTR ERV1 -327 282 1 1661 201 29 15 chr1 232065414 232066067 -50127597 - L1MA6 LINE L1 -3606 3959 3303 1335 200 3 17 chr1 232066246 232066546 -50127118 - L1MA6 LINE L1 -4158 3408 3113 1198 297 101 45 chr1 232066582 232067543 -50126121 - L1MA6 LINE L1 -5771 1795 781 1760 173 0 0 chr1 232067562 232067874 -50125790 - AluJb SINE Alu 0 312 1 688 142 62 31 chr1 232067876 232068038 -50125626 + Charlie1 DNA MER1_type 2595 2761 0 1687 266 59 49 chr1 232068069 232068216 -50125448 + L1M4 LINE L1 3345 3489 -2657 1806 156 24 10 chr1 232068216 232068511 -50125153 + AluJo SINE Alu 1 299 -13 1687 266 59 49 chr1 232068511 232069238 -50124426 + L1M4 LINE L1 3489 4228 -1918 1578 151 12 33 chr1 232069263 232069292 -50124372 - MER44D DNA MER2_type -1882 605 577 2059 139 3 0 chr1 232069292 232069595 -50124069 - AluSq SINE Alu -3 310 7 1578 151 12 33 chr1 232069595 232070050 -50123614 - MER44D DNA MER2_type -1910 577 1 204 91 0 0 chr1 232070418 232070442 -50123222 + (CA)n Simple_repeat Simple_repeat 2 28 -6 1903 131 16 42 chr1 232070442 232070754 -50122910 + AluSx SINE Alu 1 304 -8 204 91 0 0 chr1 232070754 232070762 -50122902 + (CA)n Simple_repeat Simple_repeat 27 34 0 3036 130 85 7 chr1 232070997 232071559 -50122105 + L1MB7 LINE L1 5570 6175 -9 240 302 27 124 chr1 232071575 232071800 -50121864 - L2 LINE L2 -559 2755 2553 223 324 47 34 chr1 232071831 232071979 -50121685 - L2 LINE L2 -1217 2097 1948 264 206 55 14 chr1 232072081 232072154 -50121510 + L2 LINE L2 3159 3234 -79 3815 134 62 7 chr1 232072154 232072813 -50120851 - L1MB3 LINE L1 0 6183 5483 1980 137 0 73 chr1 232072813 232073142 -50120522 - AluSq SINE Alu -8 305 1 3815 134 62 7 chr1 232073142 232073178 -50120486 - L1MB3 LINE L1 -700 5483 5450 22 56 0 0 chr1 232073226 232073262 -50120402 + AT_rich Low_complexity Low_complexity 1 36 0 1104 231 27 0 chr1 232075326 232075547 -50118117 - MIR SINE MIR -24 238 12 581 215 8 8 chr1 232075681 232075811 -50117853 - MER94 DNA DNA 0 134 5 771 259 65 14 chr1 232075900 232076116 -50117548 - MIR SINE MIR -4 258 32 21 0 0 0 chr1 232076273 232076294 -50117370 + AT_rich Low_complexity Low_complexity 1 21 0 719 106 0 18 chr1 232076308 232076449 -50117215 + AluSg/x SINE Alu 190 310 0 396 245 32 0 chr1 232077531 232077625 -50116039 + L2 LINE L2 3216 3312 -1 24 32 0 0 chr1 232078129 232078160 -50115504 + AT_rich Low_complexity Low_complexity 1 31 0 629 203 35 0 chr1 232080697 232080840 -50112824 - L1ME3 LINE L1 0 6162 6015 376 193 0 12 chr1 232080844 232080927 -50112737 + L1ME3 LINE L1 5930 6011 -153 2033 151 0 0 chr1 232080955 232081247 -50112417 - AluJb SINE Alu -20 292 1 1624 118 11 11 chr1 232081581 232081853 -50111811 + L1MA5 LINE L1 5411 5682 -618 259 119 0 0 chr1 232081858 232081900 -50111764 + tRNA-Glu-GAG tRNA tRNA 1 42 -33 363 98 0 0 chr1 232081900 232081961 -50111703 + (TC)n Simple_repeat Simple_repeat 2 62 0 3476 139 43 0 chr1 232081962 232082560 -50111104 + L1MA5 LINE L1 5673 6296 -4 207 290 6 0 chr1 232083325 232083406 -50110258 - MIR SINE MIR -23 185 103 2621 249 90 36 chr1 232084189 232085364 -50108300 - L2 LINE L2 -5 3308 2072 2120 102 7 14 chr1 232085807 232086101 -50107563 + AluSx SINE Alu 1 292 -20 387 252 49 32 chr1 232086209 232086332 -50107332 - MIR3 SINE MIR -21 187 63 918 198 73 0 chr1 232086405 232086597 -50107067 + MIR SINE MIR 1 206 -56 447 314 108 19 chr1 232088548 232088863 -50104801 + MER20B DNA MER1_type 32 374 -409 646 193 148 4 chr1 232088920 232089163 -50104501 + MER20B DNA MER1_type 475 752 -31 22 56 0 0 chr1 232090022 232090058 -50103606 + AT_rich Low_complexity Low_complexity 1 36 0 1163 179 9 27 chr1 232090570 232090794 -50102870 - MER58A DNA MER1_type -4 220 1 231 260 45 119 chr1 232091977 232092154 -50101510 + MER5A DNA MER1_type 17 180 -9 480 250 52 9 chr1 232092380 232092496 -50101168 - L2 LINE L2 -1 3312 3192 30 0 0 0 chr1 232092561 232092591 -50101073 + AT_rich Low_complexity Low_complexity 1 30 0 363 153 33 66 chr1 232092595 232092778 -50100886 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 2568 87 5 31 chr1 232092794 232092919 -50100745 - L1PB2 LINE L1 -4 6147 6020 2331 75 0 3 chr1 232092919 232093212 -50100452 - AluY SINE Alu -18 293 2 2568 87 5 31 chr1 232093212 232093475 -50100189 - L1PB2 LINE L1 -131 6020 5769 940 112 0 0 chr1 232093475 232093600 -50100064 - AluSp/q SINE Alu -15 298 174 753 298 38 13 chr1 232093626 232093864 -50099800 - L2 LINE L2 -981 2333 2090 607 281 30 51 chr1 232094140 232094375 -50099289 + MIR SINE MIR 20 249 -13 344 319 59 99 chr1 232094400 232094687 -50098977 + L2 LINE L2 2908 3184 -88 2027 138 0 0 chr1 232094687 232094970 -50098694 - AluSx SINE Alu -29 283 1 344 319 59 99 chr1 232094970 232094986 -50098678 + L2 LINE L2 3184 3199 -73 691 297 14 9 chr1 232095086 232095308 -50098356 - L2 LINE L2 -896 2418 2196 3025 126 34 20 chr1 232095642 232095753 -50097911 - L1P4 LINE L1 -549 5612 5504 261 0 0 0 chr1 232095753 232095782 -50097882 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3025 126 34 20 chr1 232095782 232096479 -50097185 - L1P4 LINE L1 -657 5504 4797 3976 63 8 0 chr1 232096484 232096994 -50096670 + L1PA14 LINE L1 5638 6151 -10 1742 170 37 7 chr1 232097251 232097551 -50096113 - AluJb SINE Alu -3 309 1 828 250 74 0 chr1 232097656 232097872 -50095792 + MIR SINE MIR 23 254 -8 290 286 32 65 chr1 232099263 232099327 -50094337 + L1ME4a LINE L1 5377 5442 -2366 2118 129 0 0 chr1 232099327 232099622 -50094042 - AluSx SINE Alu -17 295 1 290 286 32 65 chr1 232099622 232099742 -50093922 + L1ME4a LINE L1 5442 5555 -2253 247 164 269 0 chr1 232099914 232099981 -50093683 - L2 LINE L2 -4 3309 3225 359 219 10 10 chr1 232099996 232100092 -50093572 + L1ME4a LINE L1 5711 5806 -315 317 267 150 15 chr1 232100150 232100416 -50093248 + L1ME4a LINE L1 5789 6090 -31 2005 148 0 23 chr1 232100958 232101268 -50092396 - AluSx SINE Alu -9 303 1 591 335 27 11 chr1 232101840 232102028 -50091636 - MIR3 SINE MIR -6 202 12 321 235 77 61 chr1 232103303 232103550 -50090114 + L1MEd LINE L1 983 1233 -4886 624 310 70 29 chr1 232103564 232103909 -50089755 + L1MEd LINE L1 1296 1654 -4656 26 50 0 0 chr1 232104083 232104123 -50089541 + AT_rich Low_complexity Low_complexity 1 40 0 323 271 44 6 chr1 232104588 232104769 -50088895 + L1MEd LINE L1 2455 2642 -3487 3217 237 180 69 chr1 232104815 232105396 -50088268 - L2 LINE L2 0 3313 2798 2283 92 0 0 chr1 232105396 232105709 -50087955 - AluSg SINE Alu 0 313 1 3217 237 180 69 chr1 232105709 232106065 -50087599 - L2 LINE L2 -515 2798 2483 3543 76 6 18 chr1 232106065 232106564 -50087100 - L1PB1 LINE L1 0 6151 5659 2219 110 3 3 chr1 232106574 232106875 -50086789 - AluSx SINE Alu -11 301 1 3217 237 180 69 chr1 232106875 232107398 -50086266 - L2 LINE L2 -837 2476 2013 1989 111 14 14 chr1 232107398 232107687 -50085977 - AluSx SINE Alu -19 293 5 3217 237 180 69 chr1 232107687 232108477 -50085187 - L2 LINE L2 -1300 2013 811 713 244 72 23 chr1 232108527 232108875 -50084789 + L1MEd LINE L1 2858 3222 -2907 285 316 10 51 chr1 232109220 232109514 -50084150 + L1MEd LINE L1 3322 3603 -2526 224 30 30 0 chr1 232110420 232110453 -50083211 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 21 57 0 0 chr1 232111491 232111526 -50082138 + AT_rich Low_complexity Low_complexity 1 35 0 227 213 53 0 chr1 232111560 232111635 -50082029 - L1MA10 LINE L1 -1 6333 6255 453 245 117 38 chr1 232111842 232112025 -50081639 - MER20B DNA MER1_type -5 214 16 25 0 0 0 chr1 232113035 232113060 -50080604 + AT_rich Low_complexity Low_complexity 1 25 0 228 327 55 0 chr1 232113129 232113239 -50080425 + L2 LINE L2 3197 3312 -1 22 0 0 0 chr1 232113251 232113273 -50080391 + AT_rich Low_complexity Low_complexity 1 22 0 4445 99 19 0 chr1 232113549 232114172 -50079492 - MER41B LTR ERV1 0 635 1 325 189 79 39 chr1 232114181 232114308 -50079356 + MER112 DNA MER1_type 109 240 -20 290 189 68 0 chr1 232114471 232114545 -50079119 - L1MC4 LINE L1 -1 8041 7963 2347 76 3 0 chr1 232114557 232114848 -50078816 - AluSp SINE Alu -5 308 17 333 0 0 0 chr1 232114985 232115022 -50078642 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1375 216 4 4 chr1 232115022 232115162 -50078502 - AluJb SINE Alu -48 264 122 261 0 0 0 chr1 232115162 232115191 -50078473 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1375 216 4 4 chr1 232115191 232115314 -50078350 - AluJb SINE Alu -189 123 1 3695 212 96 18 chr1 232115314 232116350 -50077314 - L1MC4 LINE L1 -468 7574 6459 292 342 138 20 chr1 232116682 232116736 -50076928 - MIR SINE MIR -1 261 215 348 24 0 0 chr1 232116736 232116777 -50076887 + (TG)n Simple_repeat Simple_repeat 2 42 0 292 342 138 20 chr1 232116777 232116940 -50076724 - MIR SINE MIR -47 215 20 25 0 0 0 chr1 232117037 232117062 -50076602 + AT_rich Low_complexity Low_complexity 1 25 0 371 229 0 12 chr1 232117766 232117849 -50075815 + MIR SINE MIR 67 148 -114 5063 105 74 16 chr1 232117849 232118754 -50074910 - Tigger3b DNA MER2_type 0 1231 274 2400 72 0 19 chr1 232118761 232119068 -50074596 + AluY SINE Alu 1 301 -10 552 160 30 10 chr1 232119074 232119174 -50074490 - Tigger3b DNA MER2_type -1129 102 1 2070 117 7 19 chr1 232119677 232119986 -50073678 - AluSq SINE Alu -7 306 2 587 276 33 7 chr1 232123997 232124149 -50069515 - MIR SINE MIR -79 183 28 22 0 0 0 chr1 232125078 232125100 -50068564 + AT_rich Low_complexity Low_complexity 1 22 0 2014 110 20 7 chr1 232125152 232125451 -50068213 + AluSq SINE Alu 1 303 -10 383 345 70 7 chr1 232127234 232127376 -50066288 - L2 LINE L2 -16 3256 3106 622 333 99 63 chr1 232127480 232128018 -50065646 - L2 LINE L2 -359 2955 2379 1765 191 3 0 chr1 232128018 232128312 -50065352 + AluJo SINE Alu 4 298 -14 622 333 99 63 chr1 232128312 232128547 -50065117 - L2 LINE L2 -935 2379 2154 604 283 117 5 chr1 232129637 232129860 -50063804 - MIR SINE MIR -3 259 12 965 123 0 0 chr1 232130041 232130202 -50063462 - AluJo/FRAM SINE Alu 0 312 152 657 158 0 26 chr1 232130203 232130317 -50063347 - AluSq/x SINE Alu -202 111 1 656 132 9 35 chr1 232130347 232130461 -50063203 + AluJb SINE Alu 141 251 -61 270 0 0 0 chr1 232130469 232130499 -50063165 + (TC)n Simple_repeat Simple_repeat 1 30 0 306 0 0 0 chr1 232130499 232130533 -50063131 + (TA)n Simple_repeat Simple_repeat 1 34 0 2435 67 3 0 chr1 232131117 232131414 -50062250 - AluY SINE Alu -13 298 1 240 309 80 74 chr1 232131429 232131591 -50062073 + L2 LINE L2 3107 3269 -3 1591 213 127 2 chr1 232133358 232133814 -50059850 + MLT1E2 LTR MaLR 111 623 -3 28 0 0 0 chr1 232136225 232136253 -50057411 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr1 232137022 232137052 -50056612 + (A)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 232137161 232137183 -50056481 + AT_rich Low_complexity Low_complexity 1 22 0 2181 137 0 0 chr1 232137573 232137873 -50055791 - AluSx SINE Alu -12 300 1 259 213 98 0 chr1 232137988 232138049 -50055615 - MIR SINE MIR -97 111 45 218 341 49 12 chr1 232138083 232138165 -50055499 - L2 LINE L2 -4 3309 3225 1781 156 27 13 chr1 232138680 232138981 -50054683 - AluJb SINE Alu -7 305 1 418 350 0 12 chr1 232139302 232139462 -50054202 + MER5B DNA MER1_type 1 158 -20 195 139 0 0 chr1 232140523 232140559 -50053105 + (T)n Simple_repeat Simple_repeat 1 36 0 239 423 6 6 chr1 232140698 232140854 -50052810 + L2 LINE L2 2550 2705 -609 * 354 317 66 44 chr1 232140853 232141036 -50052628 - L2 LINE L2 -27 3245 3059 283 279 0 0 chr1 232141610 232141696 -50051968 + L1ME4a LINE L1 4729 4814 -1332 3978 73 34 0 chr1 232141947 232142481 -50051183 - MER41A LTR ERV1 -2 552 1 26 0 0 0 chr1 232142504 232142530 -50051134 + AT_rich Low_complexity Low_complexity 1 26 0 926 27 0 0 chr1 232142610 232142720 -50050944 + L1PA3 LINE L1 6043 6152 -3 22 0 0 0 chr1 232142871 232142893 -50050771 + AT_rich Low_complexity Low_complexity 1 22 0 442 286 82 46 chr1 232142916 232143377 -50050287 + L1ME4a LINE L1 5640 6117 -4 1692 189 10 3 chr1 232144818 232145114 -50048550 - AluJo SINE Alu -14 298 1 192 77 0 0 chr1 232145324 232145350 -50048314 + (A)n Simple_repeat Simple_repeat 1 26 0 1790 142 33 4 chr1 232145485 232145759 -50047905 + AluJb SINE Alu 5 286 -26 229 333 48 0 chr1 232146647 232146731 -50046933 - MIR SINE MIR -73 135 48 21 0 0 0 chr1 232148495 232148516 -50045148 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 232149181 232149203 -50044461 + (GA)n Simple_repeat Simple_repeat 1 22 0 267 31 0 0 chr1 232149861 232149893 -50043771 + (CA)n Simple_repeat Simple_repeat 1 32 0 785 147 31 16 chr1 232152387 232152516 -50041148 - FLAM_A SINE Alu -2 131 1 1896 129 6 44 chr1 232153133 232153450 -50040214 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 232155898 232155919 -50037745 + AT_rich Low_complexity Low_complexity 1 21 0 1655 197 28 3 chr1 232155921 232156211 -50037453 + AluJb SINE Alu 1 297 -15 235 228 0 35 chr1 232157135 232157192 -50036472 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 246 130 109 0 chr1 232157303 232157349 -50036315 + MER5B DNA MER1_type 1 51 -127 223 270 79 63 chr1 232157406 232157532 -50036132 - MER5A DNA MER1_type -58 131 4 494 254 162 22 chr1 232158424 232158652 -50035012 - MIR SINE MIR -2 260 1 1267 163 4 57 chr1 232158936 232159200 -50034464 + MER58B DNA MER1_type 92 341 0 260 296 156 22 chr1 232160624 232160759 -50032905 + MIR SINE MIR 19 171 -91 485 318 232 20 chr1 232163577 232164133 -50029531 - L3 LINE CR1 -3 1574 901 2473 87 0 0 chr1 232164298 232164607 -50029057 + AluY SINE Alu 3 311 0 1673 160 4 4 chr1 232166721 232166989 -50026675 - AluJb SINE Alu -44 268 1 382 265 184 7 chr1 232167084 232167246 -50026418 + MIR3 SINE MIR 18 207 -1 513 0 0 0 chr1 232170517 232170574 -50023090 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr1 232174291 232174312 -50019352 + AT_rich Low_complexity Low_complexity 1 21 0 987 119 38 22 chr1 232174510 232174695 -50018969 - MER53 DNA DNA 0 189 2 234 0 0 0 chr1 232176400 232176426 -50017238 + (CA)n Simple_repeat Simple_repeat 2 27 0 591 15 0 0 chr1 232177967 232178035 -50015629 + (CA)n Simple_repeat Simple_repeat 2 69 0 259 349 102 26 chr1 232179030 232179597 -50014067 - L2 LINE L2 -167 3105 2490 323 315 216 4 chr1 232179608 232179862 -50013802 + L2 LINE L2 2963 3270 -2 315 249 23 136 chr1 232179867 232180044 -50013620 - L2 LINE L2 -833 2481 2325 333 329 19 0 chr1 232181204 232181362 -50012302 + MER117 DNA MER1_type 1 161 -36 403 230 26 14 chr1 232181400 232181532 -50012132 - MIR3 SINE MIR -50 158 22 320 332 30 0 chr1 232182722 232182866 -50010798 - MIR SINE MIR -71 137 34 217 250 0 0 chr1 232183119 232183163 -50010501 + L2 LINE L2 3229 3272 0 501 273 172 10 chr1 232183316 232183525 -50010139 - MIR SINE MIR -13 249 7 189 74 0 0 chr1 232186204 232186231 -50007433 + (TTC)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr1 232186517 232186542 -50007122 + (T)n Simple_repeat Simple_repeat 1 25 0 303 209 68 49 chr1 232187658 232187813 -50005851 + FRAM SINE Alu 41 98 -68 718 279 60 0 chr1 232187822 232188037 -50005627 - MIR SINE MIR -30 232 5 359 239 29 18 chr1 232188631 232188759 -50004905 - L1MC/D LINE L1 -299 5822 5706 3126 128 61 80 chr1 232189585 232189982 -50003682 - L1MB7 LINE L1 0 6184 5804 1938 144 17 0 chr1 232189982 232190274 -50003390 - AluJo SINE Alu -15 297 1 3126 128 61 80 chr1 232190274 232190578 -50003086 - L1MB7 LINE L1 -380 5804 5496 7125 26 6 0 chr1 232190578 232192037 -50001627 - L1PA4 LINE L1 -3 6152 4702 5864 21 0 0 chr1 232192037 232192742 -50000922 + L1PA4 LINE L1 4006 4710 -1436 1562 170 29 34 chr1 232192735 232193051 -50000613 - L1MB7 LINE L1 -673 5501 5198 * 2288 102 0 13 chr1 232193051 232193354 -50000310 - AluSq SINE Alu -14 299 1 1562 170 29 34 chr1 232193354 232193557 -50000107 - L1MB7 LINE L1 -976 5198 4996 1220 194 0 0 chr1 232193558 232193754 -49999910 - AluJb SINE Alu -21 291 96 3462 180 98 62 chr1 232193754 232194074 -49999590 - L1MB7 LINE L1 -1140 5006 4699 2029 141 3 0 chr1 232194074 232194365 -49999299 - AluJb SINE Alu -20 292 1 3462 180 98 62 chr1 232194365 232194767 -49998897 - L1MB7 LINE L1 -1447 4699 4313 2499 93 0 0 chr1 232194767 232195079 -49998585 - AluSx SINE Alu 0 312 1 3462 180 98 62 chr1 232195079 232195102 -49998562 - L1MB7 LINE L1 -1833 4313 4292 192 77 0 0 chr1 232195102 232195128 -49998536 + (TG)n Simple_repeat Simple_repeat 1 26 0 3462 180 98 62 chr1 232195128 232195360 -49998304 - L1MB7 LINE L1 -1854 4292 3992 284 267 141 22 chr1 232195566 232195701 -49997963 + MIR SINE MIR 106 256 -6 539 316 46 27 chr1 232196315 232196753 -49996911 - L2 LINE L2 -192 3080 2636 465 276 272 14 chr1 232197066 232197519 -49996145 + L2 LINE L2 2430 3000 -313 212 279 73 44 chr1 232197575 232197711 -49995953 + L2 LINE L2 1048 1187 -2127 324 200 0 0 chr1 232198165 232198235 -49995429 + (CA)n Simple_repeat Simple_repeat 1 70 0 231 353 48 16 chr1 232198237 232198424 -49995240 + L2 LINE L2 1804 1996 -1318 275 339 156 3 chr1 232198610 232198893 -49994771 + L2 LINE L2 2632 2957 -357 2274 120 113 18 chr1 232198911 232199302 -49994362 + MSTA LTR MaLR 1 428 0 388 245 85 11 chr1 232199506 232199600 -49994064 + MER58A DNA MER1_type 1 101 -6 1814 96 16 4 chr1 232199600 232199849 -49993815 - AluSx SINE Alu -9 303 52 291 28 0 0 chr1 232200093 232200129 -49993535 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 369 31 8 chr1 232200244 232200374 -49993290 + MIR SINE MIR 70 202 -60 334 252 97 10 chr1 232200649 232200752 -49992912 - MIR3 SINE MIR -86 122 11 449 235 27 86 chr1 232201192 232201379 -49992285 - MER5A DNA MER1_type -7 182 7 343 296 124 43 chr1 232201539 232201725 -49991939 - MIR SINE MIR -40 222 22 356 346 179 0 chr1 232202623 232202886 -49990778 + L1MC4a LINE L1 5830 6139 -1669 1753 165 0 66 chr1 232202980 232203313 -49990351 - AluJo SINE Alu -1 311 1 242 284 65 60 chr1 232204542 232204743 -49988921 - MIR3 SINE MIR -5 203 2 212 163 47 31 chr1 232205814 232205943 -49987721 + (TG)n Simple_repeat Simple_repeat 1 131 0 237 219 52 45 chr1 232206033 232206188 -49987476 + (GTGTG)n Simple_repeat Simple_repeat 2 157 0 * 290 113 61 39 chr1 232206074 232206311 -49987353 + (TG)n Simple_repeat Simple_repeat 1 242 0 242 83 64 58 chr1 232206361 232206517 -49987147 + (TG)n Simple_repeat Simple_repeat 1 157 0 405 75 64 40 chr1 232206536 232206709 -49986955 + (TG)n Simple_repeat Simple_repeat 1 177 0 483 49 49 76 chr1 232206773 232206958 -49986706 + (TG)n Simple_repeat Simple_repeat 1 180 0 417 49 49 56 chr1 232206970 232207114 -49986550 + (TG)n Simple_repeat Simple_repeat 1 143 0 1661 100 165 4 chr1 232208105 232208365 -49985299 - AluJo SINE Alu 0 302 1 356 321 95 2 chr1 232208442 232208614 -49985050 + MIR SINE MIR 6 188 -62 239 291 139 0 chr1 232209473 232209559 -49984105 - L2 LINE L2 -38 3234 3137 252 255 88 49 chr1 232209842 232209944 -49983720 - MIR SINE MIR -67 195 90 569 226 88 22 chr1 232210527 232210708 -49982956 + MIR SINE MIR 16 208 -54 185 323 77 0 chr1 232211221 232211286 -49982378 - MIR3 SINE MIR -46 162 93 896 169 0 2 chr1 232211319 232211502 -49982162 + AluJo SINE Alu 3 217 -95 251 263 24 0 chr1 232212750 232212836 -49980828 - MIR SINE MIR -65 143 48 561 351 9 17 chr1 232213378 232213609 -49980055 + L3 LINE CR1 1346 1574 -3 451 352 70 10 chr1 232214480 232214679 -49978985 + MIR SINE MIR 32 242 -20 193 229 16 49 chr1 232215327 232215388 -49978276 - MIR3 SINE MIR -4 204 146 210 270 95 0 chr1 232215609 232215683 -49977981 - MIR SINE MIR -6 256 176 653 234 75 42 chr1 232215689 232215903 -49977761 + MIR SINE MIR 8 228 -34 1953 78 92 0 chr1 232215935 232216206 -49977458 + AluSp SINE Alu 1 296 -17 3067 168 9 13 chr1 232216219 232216766 -49976898 + L1MB8 LINE L1 5633 6177 -1 279 350 70 6 chr1 232216774 232216931 -49976733 - MIR SINE MIR -78 184 18 198 325 33 53 chr1 232218197 232218348 -49975316 - MIR3 SINE MIR -60 148 1 761 256 26 30 chr1 232218447 232218677 -49974987 - MIR SINE MIR -32 230 2 1742 121 0 104 chr1 232218737 232219084 -49974580 + AluJb SINE Alu 1 311 -1 205 351 0 0 chr1 232219713 232219787 -49973877 - L3b LINE CR1 -191 1392 1319 3226 240 112 15 chr1 232220042 232221298 -49972366 - L1 LINE L1 -1998 4148 2654 966 139 35 60 chr1 232221761 232221962 -49971702 - MLT2A2 LTR ERVL 0 453 258 287 200 0 18 chr1 232222922 232222977 -49970687 - MIR SINE MIR -84 124 71 234 0 0 0 chr1 232223827 232223853 -49969811 + (CGGGGG)n Simple_repeat Simple_repeat 4 29 0 209 105 0 26 chr1 232223945 232223983 -49969681 + (TC)n Simple_repeat Simple_repeat 2 38 0 287 281 144 27 chr1 232226726 232226872 -49966792 + MIR3 SINE MIR 4 166 -42 270 365 10 0 chr1 232226882 232226978 -49966686 - L3b LINE CR1 -197 1386 1290 252 271 29 0 chr1 232227062 232227132 -49966532 + MIR3 SINE MIR 110 181 -27 558 252 14 7 chr1 232227619 232227758 -49965906 - MIR SINE MIR -111 151 12 213 39 0 0 chr1 232227865 232227891 -49965773 + (CACCC)n Simple_repeat Simple_repeat 5 30 0 448 254 46 8 chr1 232227915 232228045 -49965619 - MIR3 SINE MIR -7 201 67 333 0 0 0 chr1 232228363 232228400 -49965264 + (GA)n Simple_repeat Simple_repeat 2 38 0 184 276 58 35 chr1 232229319 232229406 -49964258 - MIR SINE MIR -62 146 58 233 176 294 39 chr1 232229759 232229861 -49963803 + L2 LINE L2 3168 3295 -18 462 315 56 6 chr1 232229878 232230040 -49963624 + MIR SINE MIR 54 223 -39 213 98 49 24 chr1 232231217 232231258 -49962406 + C-rich Low_complexity Low_complexity 5 46 0 894 254 68 4 chr1 232231356 232231592 -49962072 + MIR SINE MIR 6 256 -6 1911 128 21 3 chr1 232231593 232231882 -49961782 - AluSx SINE Alu -5 307 14 974 247 13 0 chr1 232232830 232233061 -49960603 - MIR SINE MIR -24 238 5 465 313 39 0 chr1 232233138 232233266 -49960398 - MIR SINE MIR -78 184 52 184 256 0 0 chr1 232233303 232233342 -49960322 - MIR SINE MIR -94 114 76 1179 117 0 22 chr1 232233849 232234029 -49959635 - AluSg/x SINE Alu -13 299 124 322 316 118 45 chr1 232234029 232234428 -49959236 - L2 LINE L2 -26 3246 2819 423 331 95 6 chr1 232234526 232234843 -49958821 - L2 LINE L2 -666 2648 2304 306 298 127 5 chr1 232234994 232235199 -49958465 + L2 LINE L2 2694 2923 -391 401 290 70 40 chr1 232235274 232235474 -49958190 + L2 LINE L2 3102 3307 -6 253 282 64 26 chr1 232235640 232235718 -49957946 - L2 LINE L2 -75 3197 3117 42 0 0 0 chr1 232235718 232235760 -49957904 + AT_rich Low_complexity Low_complexity 1 42 0 520 256 135 42 chr1 232236208 232236423 -49957241 - MIR SINE MIR 0 262 28 342 237 40 13 chr1 232237100 232237176 -49956488 + L1ME3A LINE L1 5852 5929 -241 2108 152 133 13 chr1 232237181 232237563 -49956101 + MSTA LTR MaLR 1 428 0 2248 221 92 0 chr1 232237592 232238081 -49955583 + MLT1G1 LTR MaLR 39 572 -23 2258 116 0 0 chr1 232238355 232238665 -49954999 + AluSx SINE Alu 1 310 -2 458 323 162 40 chr1 232239224 232240816 -49952848 + L2 LINE L2 1489 3264 -8 358 211 14 0 chr1 232241020 232241091 -49952573 + AluJ/FLAM SINE Alu 1 72 -230 187 200 29 0 chr1 232241868 232241903 -49951761 + L2 LINE L2 3251 3286 -27 301 307 30 0 chr1 232242198 232242299 -49951365 + MIR3 SINE MIR 14 117 -91 603 317 64 64 chr1 232242867 232243618 -49950046 - L2 LINE L2 0 3272 2203 322 284 96 27 chr1 232243906 232244091 -49949573 - MIR SINE MIR -40 222 19 195 184 0 0 chr1 232244506 232244544 -49949120 + (CA)n Simple_repeat Simple_repeat 2 39 0 469 309 40 25 chr1 232244826 232245027 -49948637 + MIR SINE MIR 3 206 -56 602 310 196 8 chr1 232245106 232245493 -49948171 - L3 LINE CR1 -34 1543 1084 738 242 0 0 chr1 232246407 232246556 -49947108 + MIR3 SINE MIR 57 205 -3 551 284 62 10 chr1 232248574 232248783 -49944881 + MIR SINE MIR 4 224 -38 227 330 0 43 chr1 232248839 232248954 -49944710 + MER5A DNA MER1_type 1 110 -79 33 25 0 0 chr1 232249001 232249041 -49944623 + AT_rich Low_complexity Low_complexity 1 40 0 808 143 0 0 chr1 232249041 232249160 -49944504 - FLAM_C SINE Alu -19 124 6 454 297 25 0 chr1 232249376 232249494 -49944170 - L2 LINE L2 0 3313 3193 247 276 79 0 chr1 232249498 232249574 -49944090 - L2 LINE L2 0 3313 3232 328 292 9 44 chr1 232250124 232250237 -49943427 - MIR3 SINE MIR -23 185 77 386 320 68 32 chr1 232250272 232250491 -49943173 - L2 LINE L2 0 3272 3046 285 123 18 0 chr1 232250659 232250716 -49942948 + L1MA9 LINE L1 6216 6273 -39 2277 246 99 26 chr1 232250787 232251026 -49942638 - L1ME3A LINE L1 -18 6152 5932 1729 159 3 17 chr1 232251026 232251322 -49942342 - AluJo SINE Alu -12 300 9 2277 246 99 26 chr1 232251322 232251898 -49941766 - L1ME3A LINE L1 -238 5932 5277 291 208 0 0 chr1 232303068 232303121 -49890543 + L2 LINE L2 3247 3299 -14 303 232 29 0 chr1 232304138 232304207 -49889457 + Tigger2 DNA MER2_type 2 72 -2646 * 2121 127 163 8 chr1 232304194 232304580 -49889084 + Tigger2 DNA MER2_type 2273 2718 0 2058 107 0 21 chr1 232305192 232305482 -49888182 - MER4A LTR ERV1 -26 638 355 855 71 9 0 chr1 232305520 232305632 -49888032 - MER4A LTR ERV1 -307 357 245 732 110 55 0 chr1 232305774 232305901 -49887763 - AluSq/x SINE Alu -174 139 6 876 305 24 27 chr1 232306055 232306429 -49887235 - MER66-int LTR ERV1 -391 6285 5913 1160 148 0 103 chr1 232306711 232306922 -49886742 - MER66-int LTR ERV1 -1851 4825 4641 2210 124 10 0 chr1 232306922 232307229 -49886435 - AluSx SINE Alu -2 310 1 1160 148 0 103 chr1 232307229 232307260 -49886404 - MER66-int LTR ERV1 -2035 4641 4608 579 152 18 45 chr1 232307263 232307375 -49886289 - MER49 LTR ERV1 -200 723 615 * 1081 182 20 83 chr1 232307367 232307568 -49886096 - MER4D LTR ERV1 -632 240 94 2379 83 0 0 chr1 232307568 232307858 -49885806 - AluY SINE Alu -16 295 6 1081 182 20 83 chr1 232307858 232307934 -49885730 - MER4D LTR ERV1 -778 94 15 466 266 95 28 chr1 232308263 232308515 -49885149 + L1ME4a LINE L1 5658 5926 -195 1961 119 0 96 chr1 232308989 232309334 -49884330 - AluSx SINE Alu 0 312 1 1134 159 0 0 chr1 232309353 232309529 -49884135 - AluSg/x SINE Alu -3 309 134 2356 98 7 0 chr1 232309529 232309826 -49883838 - AluSx SINE Alu -13 299 1 234 275 38 38 chr1 232310555 232310635 -49883029 - MIR SINE MIR -56 206 127 277 73 24 0 chr1 232310638 232310679 -49882985 + Alu SINE Alu 1 42 -260 230 212 0 71 chr1 232310906 232310991 -49882673 + T-rich Low_complexity Low_complexity 1 79 0 296 283 132 9 chr1 232311040 232311146 -49882518 - MER5A DNA MER1_type 0 189 71 2322 75 0 30 chr1 232311444 232311749 -49881915 + AluSg SINE Alu 1 296 -14 281 229 66 74 chr1 232311827 232311949 -49881715 + MIR SINE MIR 23 143 -65 247 282 253 29 chr1 232312117 232312287 -49881377 + MIR SINE MIR 13 220 -42 1178 69 109 35 chr1 232313458 232313660 -49880004 - MER44D DNA MER2_type -2 703 487 2104 99 17 14 chr1 232313661 232313953 -49879711 + AluSq SINE Alu 1 293 -20 1282 49 0 12 chr1 232314053 232314217 -49879447 + L1PA5 LINE L1 5993 6154 0 693 168 74 7 chr1 232314221 232314370 -49879294 + L1MB8 LINE L1 6008 6166 -12 777 196 72 7 chr1 232314848 232315001 -49878663 + AluSg/x SINE Alu 135 297 -13 745 106 9 0 chr1 232315161 232315274 -49878390 - MER41D LTR ERV1 -442 115 2 2342 93 0 16 chr1 232315600 232315911 -49877753 - AluSx SINE Alu 0 312 7 1191 145 6 0 chr1 232316580 232316759 -49876905 + AluSg/x SINE Alu 133 312 0 874 222 24 0 chr1 232316912 232317079 -49876585 - AluSg/x SINE Alu -6 304 134 1945 101 4 0 chr1 232318597 232318844 -49874820 - AluSp SINE Alu -6 307 60 202 311 101 76 chr1 232319217 232319336 -49874328 - L2 LINE L2 -9 3304 3183 2322 67 42 0 chr1 232319354 232319639 -49874025 - AluY SINE Alu -14 297 1 779 135 0 71 chr1 232319777 232319918 -49873746 + FLAM_C SINE Alu 3 133 0 340 194 23 0 chr1 232320149 232320237 -49873427 + MER41D-int LTR ERV1 5858 5930 -16 3053 170 21 27 chr1 232320247 232320312 -49873352 + MER41D LTR ERV1 1 65 -492 2584 60 0 0 chr1 232320312 232320613 -49873051 + AluY SINE Alu 1 301 -10 3053 170 21 27 chr1 232320613 232321107 -49872557 + MER41D LTR ERV1 65 557 0 816 149 8 0 chr1 232322422 232322556 -49871108 + AluSg/x SINE Alu 178 312 0 509 103 26 0 chr1 232322556 232322634 -49871030 - MER44D DNA MER2_type -206 403 54 2219 122 3 0 chr1 232322683 232322977 -49870687 + AluSx SINE Alu 1 295 -17 180 77 0 0 chr1 232324790 232324816 -49868848 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 233 346 40 0 chr1 232325221 232325322 -49868342 + AluSg SINE Alu 1 105 -195 548 185 29 14 chr1 232325456 232325602 -49868062 - MLT1B LTR MaLR -83 307 130 2339 112 0 0 chr1 232325616 232325928 -49867736 - AluSx SINE Alu 0 312 1 2274 95 7 0 chr1 232327196 232327491 -49866173 + AluSp SINE Alu 1 297 -16 2339 83 20 3 chr1 232327934 232328234 -49865430 + AluSx SINE Alu 1 305 -7 932 210 122 13 chr1 232328238 232328467 -49865197 + MIR SINE MIR 8 261 -1 461 253 91 23 chr1 232329061 232329392 -49864272 - MLT1G1 LTR MaLR 0 595 191 1823 160 32 3 chr1 232329395 232329677 -49863987 + AluSx SINE Alu 1 290 -22 1564 185 122 8 chr1 232329718 232330070 -49863594 + MLT1C LTR MaLR 15 406 -61 2018 94 57 17 chr1 232330073 232330370 -49863294 - AluY SINE Alu -2 309 1 1502 173 33 4 chr1 232330875 232331146 -49862518 + AluJb SINE Alu 1 279 -33 354 222 72 52 chr1 232331968 232332121 -49861543 - L1ME2 LINE L1 -2 6162 6007 1384 157 164 19 chr1 232332157 232332419 -49861245 + AluJb SINE Alu 3 302 0 281 245 245 20 chr1 232332595 232332693 -49860971 - MER5A DNA MER1_type -44 145 26 1081 87 0 0 chr1 232333609 232333747 -49859917 - AluSp/q SINE Alu -2 311 174 2194 117 3 0 chr1 232334933 232335232 -49858432 + AluSx SINE Alu 1 300 -12 240 59 0 0 chr1 232336276 232336310 -49857354 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2422 69 0 3 chr1 232336310 232336598 -49857066 - AluSq SINE Alu -25 288 2 2252 128 0 0 chr1 232337493 232337798 -49855866 + AluSx SINE Alu 1 305 -7 2171 125 3 3 chr1 232337799 232338110 -49855554 + AluSx SINE Alu 1 311 -1 779 205 25 19 chr1 232338343 232338504 -49855160 + FAM SINE Alu 1 162 -13 2395 102 0 9 chr1 232339671 232339986 -49853678 + AluSx SINE Alu 1 312 0 623 242 19 6 chr1 232340048 232340209 -49853455 + MLT1A1 LTR MaLR 199 361 -4 1121 203 37 41 chr1 232340943 232341238 -49852426 - AluSg1 SINE Alu -5 304 11 260 264 22 11 chr1 232341388 232341479 -49852185 - AluJ/FLAM SINE Alu -210 92 1 367 297 84 64 chr1 232341493 232341742 -49851922 + L2 LINE L2 2809 3062 -210 284 143 0 0 chr1 232341866 232341908 -49851756 + L2 LINE L2 3264 3305 -8 242 307 97 45 chr1 232341906 232342082 -49851582 - L2 LINE L2 -1287 2027 1843 * 1941 162 0 10 chr1 232342138 232342441 -49851223 - AluJo SINE Alu -12 300 1 2441 64 3 13 chr1 232345011 232345309 -49848355 - AluY SINE Alu -16 295 1 1329 176 10 81 chr1 232345375 232345608 -49848056 - AluJb SINE Alu -3 309 100 1942 136 0 66 chr1 232345608 232345940 -49847724 - AluSx SINE Alu -1 311 2 1329 176 10 81 chr1 232345940 232346002 -49847662 - AluJb SINE Alu -212 100 35 856 126 0 24 chr1 232346417 232346544 -49847120 + FLAM_C SINE Alu 13 136 -7 21 0 0 0 chr1 232346604 232346625 -49847039 + AT_rich Low_complexity Low_complexity 1 21 0 425 241 41 55 chr1 232346903 232347048 -49846616 + AluJb SINE Alu 154 296 -16 287 231 172 30 chr1 232347062 232347196 -49846468 - L1ME3 LINE L1 -21 6141 5989 * 675 214 189 11 chr1 232347193 232347473 -49846191 - L1M4 LINE L1 -1277 4869 4540 375 226 97 0 chr1 232347473 232347566 -49846098 - MER58 DNA MER1_type -1 2419 2318 281 262 0 93 chr1 232347563 232347587 -49846077 - MER58 DNA MER1_type -242 99 74 * 1803 167 10 7 chr1 232347587 232347887 -49845777 + AluJb SINE Alu 1 301 -11 281 262 0 93 chr1 232347887 232347969 -49845695 - MER58 DNA MER1_type -267 74 3 1234 152 30 0 chr1 232348119 232348316 -49845348 - AluJo SINE Alu -26 286 84 2189 98 18 0 chr1 232348325 232348610 -49845054 - AluSg SINE Alu -16 294 5 281 225 62 0 chr1 232349310 232349390 -49844274 - L1ME LINE L1 -5983 87 3 230 221 126 0 chr1 232349895 232349990 -49843674 + L1M2 LINE L1 5342 5448 -852 1335 178 0 16 chr1 232350015 232350257 -49843407 - AluJo SINE Alu 0 312 75 2536 57 0 0 chr1 232352256 232352552 -49841112 - AluY SINE Alu -15 296 1 216 348 104 9 chr1 232352637 232352752 -49840912 + MIR SINE MIR 20 145 -117 258 325 77 17 chr1 232352852 232352969 -49840695 - MIR SINE MIR -119 143 20 2333 104 3 0 chr1 232353317 232353625 -49840039 - AluSg SINE Alu -1 309 1 400 294 126 74 chr1 232353627 232354032 -49839632 - L2 LINE L2 -1 3271 2846 235 291 116 12 chr1 232354116 232354202 -49839462 - MIR SINE MIR -42 220 126 470 263 105 23 chr1 232354815 232354986 -49838678 - MIR SINE MIR -54 208 24 206 137 96 68 chr1 232355008 232355081 -49838583 - L2 LINE L2 -187 3085 3011 214 95 143 0 chr1 232355091 232355133 -49838531 + L2 LINE L2 3223 3270 -2 306 98 0 0 chr1 232355179 232355230 -49838434 + (GGGGA)n Simple_repeat Simple_repeat 4 54 0 594 256 143 14 chr1 232356371 232356594 -49837070 - MIR SINE MIR -4 258 7 2338 111 0 9 chr1 232357014 232357330 -49836334 - AluSq SINE Alu 0 313 1 843 148 7 21 chr1 232358250 232358392 -49835272 - FLAM_C SINE Alu -3 140 1 537 212 8 8 chr1 232358420 232358538 -49835126 + Charlie8 DNA MER1_type 72 189 -2228 2294 108 3 0 chr1 232358675 232358970 -49834694 - AluSp SINE Alu -17 296 1 188 242 0 0 chr1 232359115 232359148 -49834516 - L2 LINE L2 -19 3294 3262 1952 168 0 7 chr1 232359168 232359477 -49834187 - AluSx SINE Alu -5 307 1 246 413 52 0 chr1 232359485 232359657 -49834007 + L2 LINE L2 2624 2804 -510 1035 173 0 0 chr1 232359657 232359819 -49833845 - FRAM SINE Alu -4 162 1 3542 159 42 1 chr1 232359826 232360493 -49833171 - L1MB7 LINE L1 0 6184 5491 947 130 0 0 chr1 232360519 232360650 -49833014 + AluJo/FLAM SINE Alu 3 133 -169 2247 82 65 0 chr1 232360653 232360947 -49832717 + AluSp SINE Alu 1 313 0 2108 109 0 4 chr1 232360981 232361256 -49832408 + AluSg SINE Alu 30 303 -7 2368 90 3 3 chr1 232362408 232362709 -49830955 - AluSc SINE Alu -8 301 1 1878 151 13 3 chr1 232362710 232363008 -49830656 - AluJo SINE Alu -11 301 1 21 36 0 0 chr1 232363537 232363565 -49830099 + AT_rich Low_complexity Low_complexity 1 28 0 215 224 0 0 chr1 232363974 232364032 -49829632 + T-rich Low_complexity Low_complexity 2 59 0 1744 104 5 0 chr1 232365247 232365469 -49828195 - AluSg SINE Alu -87 223 1 1311 229 4 11 chr1 232366348 232366627 -49827037 + AluJo SINE Alu 1 277 -35 6214 75 15 48 chr1 232366850 232367504 -49826160 + L1PA13 LINE L1 4770 5444 -719 2550 78 0 0 chr1 232367504 232367813 -49825851 + AluSg SINE Alu 1 309 -1 6214 75 15 48 chr1 232367813 232368572 -49825092 + L1PA13 LINE L1 5444 6162 -1 238 278 41 31 chr1 232370628 232370725 -49822939 + MIR3 SINE MIR 68 165 -43 474 216 131 17 chr1 232370778 232370954 -49822710 + L1ME LINE L1 4164 4359 -1787 380 324 31 6 chr1 232371226 232371465 -49822199 + GA-rich Low_complexity Low_complexity 1 244 0 291 266 46 9 chr1 232371521 232371630 -49822034 + L1ME LINE L1 4290 4402 -1744 3179 211 27 19 chr1 232371636 232372415 -49821249 + L1ME LINE L1 4502 5286 -860 928 114 0 0 chr1 232372445 232372568 -49821096 + FLAM_C SINE Alu 1 123 -20 271 154 266 105 chr1 232372578 232372721 -49820943 + L1ME LINE L1 5317 5482 -684 1815 148 34 17 chr1 232373140 232373438 -49820226 + AluJb SINE Alu 1 303 -9 213 154 77 0 chr1 232374059 232374098 -49819566 - MER5C DNA MER1_type -249 75 34 352 108 23 0 chr1 232374138 232374198 -49819466 - AluSp/q SINE Alu -13 290 239 1558 125 19 0 chr1 232374309 232374525 -49819139 - AluSq SINE Alu -93 220 1 22 0 0 0 chr1 232375223 232375245 -49818419 + AT_rich Low_complexity Low_complexity 1 22 0 542 234 13 52 chr1 232375290 232375444 -49818220 + MER5A DNA MER1_type 15 162 -27 195 314 41 66 chr1 232375481 232375602 -49818062 + L2 LINE L2 2953 3070 -202 2121 163 12 0 chr1 232376141 232376484 -49817180 + MER7A DNA MER2_type 2 346 0 195 152 0 0 chr1 232377216 232377262 -49816402 + A-rich Low_complexity Low_complexity 1 46 0 319 192 26 0 chr1 232377266 232377344 -49816320 + MER4-int LTR ERV1 3884 3963 -2635 2396 79 7 7 chr1 232377354 232377659 -49816005 - AluSx SINE Alu -7 305 1 663 118 39 0 chr1 232377659 232377786 -49815878 - LOR1-int LTR ERV1 -6185 1935 1804 2287 112 3 0 chr1 232377787 232378081 -49815583 - AluSp SINE Alu -18 295 1 2208 107 3 0 chr1 232378081 232378378 -49815286 - AluSx SINE Alu -13 299 1 2267 86 10 0 chr1 232378388 232378678 -49814986 - AluSp SINE Alu -20 293 1 2297 98 19 0 chr1 232378698 232379005 -49814659 - AluSq SINE Alu 0 313 1 183 250 62 21 chr1 232379187 232379283 -49814381 - MIR SINE MIR -42 220 121 2179 108 3 7 chr1 232379729 232380026 -49813638 - AluSq SINE Alu -17 296 1 357 245 20 29 chr1 232380665 232380767 -49812897 - L1ME3A LINE L1 -191 5979 5879 907 164 25 109 chr1 232380793 232381068 -49812596 + L1ME3A LINE L1 5911 6162 -8 1443 163 112 34 chr1 232382112 232382407 -49811257 - MER1B DNA MER1_type -15 324 7 200 268 54 0 chr1 232383125 232383181 -49810483 + L2 LINE L2 3201 3259 -13 830 129 13 71 chr1 232383726 232383881 -49809783 + AluJb SINE Alu 156 301 -11 257 233 100 44 chr1 232384007 232384187 -49809477 + L1ME4a LINE L1 5932 6121 0 1469 201 0 11 chr1 232384343 232384626 -49809038 + AluJb SINE Alu 1 280 -32 221 0 35 0 chr1 232384626 232384655 -49809009 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 901 201 25 0 chr1 232385194 232385353 -49808311 + AluJb SINE Alu 137 299 -13 1529 155 16 23 chr1 232385471 232385729 -49807935 + AluJo SINE Alu 1 256 -56 1772 136 178 9 chr1 232385832 232386164 -49807500 + MLT1B LTR MaLR 3 390 0 253 152 45 0 chr1 232386497 232386563 -49807101 + CT-rich Low_complexity Low_complexity 4 72 0 1345 188 12 12 chr1 232386738 232386994 -49806670 + AluSq SINE Alu 41 296 -17 24 32 0 0 chr1 232387210 232387241 -49806423 + AT_rich Low_complexity Low_complexity 1 31 0 974 189 25 51 chr1 232388015 232388211 -49805453 + AluJo SINE Alu 85 275 -37 2229 97 3 7 chr1 232388227 232388526 -49805138 + AluY SINE Alu 1 298 -13 21 36 0 0 chr1 232389623 232389651 -49804013 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr1 232391699 232391721 -49801943 + GC_rich Low_complexity Low_complexity 1 22 0 442 239 131 8 chr1 232393995 232394125 -49799539 - MIR SINE MIR -9 199 54 2294 96 3 3 chr1 232394364 232394657 -49799007 + AluSc SINE Alu 1 293 -16 1142 130 0 0 chr1 232394657 232394811 -49798853 + AluJo/FRAM SINE Alu 135 288 -24 1478 103 10 0 chr1 232394823 232395026 -49798638 + AluY SINE Alu 1 205 -106 810 174 79 16 chr1 232395135 232395325 -49798339 + AluSg/x SINE Alu 94 295 -17 1020 261 78 127 chr1 232395326 232395495 -49798169 + L2 LINE L2 2033 2209 -1105 255 61 0 0 chr1 232395495 232395528 -49798136 + (CA)n Simple_repeat Simple_repeat 2 34 0 1020 261 78 127 chr1 232395528 232395832 -49797832 + L2 LINE L2 2209 2526 -788 828 136 8 0 chr1 232395832 232395957 -49797707 - FLAM_C SINE Alu -7 126 1 1020 261 78 127 chr1 232395957 232396294 -49797370 + L2 LINE L2 2526 2878 -436 2523 63 0 3 chr1 232396294 232396596 -49797068 - AluY SINE Alu -10 301 1 2179 113 0 3 chr1 232396600 232396893 -49796771 - AluSx SINE Alu -16 296 5 1020 261 78 127 chr1 232396893 232397043 -49796621 + L2 LINE L2 2881 2953 -361 27 29 0 0 chr1 232397045 232397079 -49796585 + AT_rich Low_complexity Low_complexity 1 34 0 489 289 50 70 chr1 232397103 232397275 -49796389 + L2 LINE L2 2954 3128 -185 2299 120 0 0 chr1 232397275 232397584 -49796080 - AluSx SINE Alu -3 309 1 489 289 50 70 chr1 232397584 232397768 -49795896 + L2 LINE L2 3128 3303 -10 189 229 0 0 chr1 232397820 232397855 -49795809 - L2 LINE L2 -43 3229 3195 563 242 25 19 chr1 232397891 232398052 -49795612 + MIR SINE MIR 2 163 -99 27 0 0 0 chr1 232398072 232398099 -49795565 + AT_rich Low_complexity Low_complexity 1 27 0 206 204 23 0 chr1 232398196 232398240 -49795424 + MIR SINE MIR 215 259 -3 1110 190 9 27 chr1 232398669 232398890 -49794774 + AluJo SINE Alu 85 301 -11 315 288 33 0 chr1 232398890 232398992 -49794672 - L1MA10 LINE L1 -51 6258 6012 488 269 41 41 chr1 232399014 232399185 -49794479 + L2 LINE L2 3142 3312 -1 719 139 0 17 chr1 232399512 232399627 -49794037 - FLAM_A SINE Alu -8 134 22 199 160 140 0 chr1 232399760 232399810 -49793854 + MIR SINE MIR 36 92 -116 702 236 124 25 chr1 232400701 232401057 -49792607 + MLT1H1 LTR MaLR 24 416 -174 2315 89 6 13 chr1 232401120 232401434 -49792230 + AluSx SINE Alu 1 312 0 698 138 28 0 chr1 232401444 232401553 -49792111 - MER20 DNA MER1_type -78 141 30 1353 141 0 82 chr1 232402731 232403071 -49790593 + AluSx SINE Alu 1 312 0 2252 106 0 3 chr1 232403374 232403391 -49790273 - AluSc SINE Alu -9 300 284 234 116 0 0 chr1 232403391 232403434 -49790230 + (TTAA)n Simple_repeat Simple_repeat 4 46 0 2252 106 0 3 chr1 232403434 232403717 -49789947 - AluSc SINE Alu -25 284 1 2213 84 3 27 chr1 232404531 232404829 -49788835 - AluSx SINE Alu -17 295 5 618 109 20 20 chr1 232405466 232405567 -49788097 + FLAM_C SINE Alu 30 130 -13 22 0 0 0 chr1 232405594 232405616 -49788048 + AT_rich Low_complexity Low_complexity 1 22 0 1328 165 90 45 chr1 232405616 232405883 -49787781 - AluJo SINE Alu -33 279 1 180 0 0 0 chr1 232406392 232406412 -49787252 + (A)n Simple_repeat Simple_repeat 1 20 0 1246 227 14 20 chr1 232406540 232406835 -49786829 - AluJb SINE Alu -19 293 1 2169 116 3 0 chr1 232406930 232407224 -49786440 + AluSx SINE Alu 1 295 -17 715 175 0 35 chr1 232407442 232407585 -49786079 + L1MB3 LINE L1 6031 6168 -15 183 129 0 0 chr1 232407643 232407674 -49785990 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2475 70 13 0 chr1 232408083 232408382 -49785282 - AluSp SINE Alu -10 303 1 2473 62 10 3 chr1 232408396 232408702 -49784962 - AluY SINE Alu -3 308 1 307 234 0 16 chr1 232408703 232408767 -49784897 + MLT1H1 LTR MaLR 403 465 -2 620 196 111 7 chr1 232409060 232409213 -49784451 - MER5A DNA MER1_type -14 175 7 238 214 0 18 chr1 232409227 232409283 -49784381 + MER5B DNA MER1_type 1 55 -123 483 176 264 0 chr1 232409284 232409409 -49784255 - Tigger5 DNA MER2_type 0 2323 2166 1873 149 7 10 chr1 232409413 232409702 -49783962 + AluJb SINE Alu 6 293 -19 240 204 0 0 chr1 232409724 232409773 -49783891 - MER5B DNA MER1_type -129 49 1 2419 83 3 0 chr1 232409900 232410200 -49783464 + AluSp SINE Alu 1 301 -12 2186 128 3 0 chr1 232410259 232410563 -49783101 + AluSq SINE Alu 1 305 -8 1564 103 9 0 chr1 232410598 232410811 -49782853 + AluY SINE Alu 1 215 -96 1375 57 129 29 chr1 232411163 232411372 -49782292 - MER30 DNA MER1_type 0 230 1 2269 92 0 20 chr1 232411414 232411719 -49781945 - AluSx SINE Alu -13 299 1 202 356 63 11 chr1 232413761 232413935 -49779729 - L2 LINE L2 -411 2903 2721 742 162 0 63 chr1 232416611 232416753 -49776911 + FLAM_A SINE Alu 1 133 0 340 146 136 3 chr1 232416810 232417016 -49776648 + AluJo SINE Alu 1 298 -4 2152 108 0 7 chr1 232419025 232419312 -49774352 + AluJb SINE Alu 1 285 -27 1947 142 10 17 chr1 232420111 232420406 -49773258 - AluJo SINE Alu -19 293 1 2251 93 40 0 chr1 232421138 232421438 -49772226 - AluSp SINE Alu 0 313 2 826 162 0 22 chr1 232421649 232421785 -49771879 - FLAM_C SINE Alu 0 133 1 770 161 0 0 chr1 232421998 232422116 -49771548 - FLAM_A SINE Alu -13 120 3 1492 198 118 83 chr1 232422319 232422948 -49770716 + L1MC5 LINE L1 7179 7837 -124 2024 132 7 0 chr1 232422948 232423236 -49770428 + AluSq SINE Alu 3 292 -21 1492 198 118 83 chr1 232423236 232423317 -49770347 + L1MC5 LINE L1 7837 7914 -47 2067 139 20 0 chr1 232423462 232423756 -49769908 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1 232423756 232423778 -49769886 + AT_rich Low_complexity Low_complexity 1 22 0 1429 208 3 21 chr1 232424177 232424494 -49769170 + AluJb SINE Alu 1 312 0 2287 112 0 6 chr1 232424497 232424811 -49768853 + AluSx SINE Alu 1 312 0 1172 124 12 6 chr1 232424811 232424980 -49768684 + AluSg/x SINE Alu 134 303 -9 422 193 0 24 chr1 232425180 232425263 -49768401 - AluJ/FRAM SINE Alu -13 299 219 881 159 0 68 chr1 232425372 232425535 -49768129 - AluJo SINE Alu -155 157 6 378 184 99 59 chr1 232425912 232426064 -49767600 - L1ME4a LINE L1 0 6121 5964 2231 115 3 13 chr1 232426088 232426401 -49767263 + AluSg SINE Alu 1 310 0 1621 177 20 27 chr1 232426646 232426946 -49766718 + AluJb SINE Alu 1 298 -14 1070 158 6 0 chr1 232426959 232427124 -49766540 + AluJb SINE Alu 143 308 -4 228 307 98 7 chr1 232427159 232427312 -49766352 - L1ME LINE L1 -565 5556 5390 836 113 6 88 chr1 232427393 232427552 -49766112 - AluJb SINE Alu -7 305 160 2071 133 10 0 chr1 232427555 232427856 -49765808 - AluSg SINE Alu -6 304 1 477 34 0 0 chr1 232427915 232427974 -49765690 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2025 101 56 0 chr1 232427974 232428242 -49765422 - AluSp SINE Alu -30 283 1 1233 174 8 37 chr1 232429510 232429752 -49763912 - MER46A DNA MER2_type -1 235 1 2221 76 0 49 chr1 232429753 232430057 -49763607 - AluY SINE Alu -22 289 1 30 0 0 0 chr1 232430066 232430096 -49763568 + AT_rich Low_complexity Low_complexity 1 30 0 393 157 24 60 chr1 232430276 232430359 -49763305 - AluJ/FRAM SINE Alu 0 302 223 644 302 60 0 chr1 232430449 232430681 -49762983 + MIR SINE MIR 15 260 -2 209 224 17 0 chr1 232430864 232430922 -49762742 + L2 LINE L2 2915 2973 -299 277 287 6 35 chr1 232430971 232431132 -49762532 + MIR SINE MIR 29 233 -29 1246 136 14 41 chr1 232431149 232431370 -49762294 - AluJo SINE Alu -12 300 86 2678 37 0 0 chr1 232431498 232431796 -49761868 + AluY SINE Alu 1 298 -13 361 242 94 39 chr1 232431804 232431932 -49761732 + L2 LINE L2 3136 3270 -2 314 318 39 19 chr1 232435054 232435208 -49758456 + MIR SINE MIR 13 169 -93 1004 107 0 0 chr1 232436616 232436756 -49756908 - AluSp/q SINE Alu -6 307 168 271 176 0 83 chr1 232438251 232438359 -49755305 + (CGGGG)n Simple_repeat Simple_repeat 3 101 0 2081 103 3 17 chr1 232438623 232438925 -49754739 - AluSx SINE Alu -14 298 1 372 244 51 153 chr1 232439375 232439650 -49754014 + MIR SINE MIR 16 262 0 1609 137 29 0 chr1 232440724 232440965 -49752699 + AluJb SINE Alu 14 261 -51 575 266 31 58 chr1 232441256 232441482 -49752182 - MIR SINE MIR -3 259 40 2468 81 0 0 chr1 232441518 232441813 -49751851 - AluSg SINE Alu -15 295 1 1343 169 38 28 chr1 232441817 232442137 -49751527 - L1MC5 LINE L1 -36 7925 7603 2526 73 0 0 chr1 232442140 232442441 -49751223 - AluY SINE Alu -10 301 1 2326 83 0 38 chr1 232442441 232442755 -49750909 - AluSg SINE Alu -8 302 1 3515 217 30 37 chr1 232442776 232443484 -49750180 - L1ME1 LINE L1 -15 6151 5439 1886 152 7 10 chr1 232443484 232443787 -49749877 - AluJb SINE Alu -4 308 7 3515 217 30 37 chr1 232443787 232443945 -49749719 - L1ME1 LINE L1 -727 5439 5281 2298 109 0 3 chr1 232443945 232444247 -49749417 - AluSq SINE Alu -12 301 1 3515 217 30 37 chr1 232444247 232444393 -49749271 - L1ME1 LINE L1 -885 5281 5135 1658 105 0 0 chr1 232444393 232444603 -49749061 - AluSg/x SINE Alu -20 290 81 3515 217 30 37 chr1 232444603 232445340 -49748324 - L1ME1 LINE L1 -1031 5135 4409 1353 236 38 3 chr1 232445560 232445904 -49747760 + L2 LINE L2 2393 2748 -566 289 231 67 48 chr1 232445917 232446021 -49747643 + L2 LINE L2 3162 3267 -46 714 224 50 97 chr1 232446189 232446448 -49747216 - LTR40a LTR ERVL -117 402 156 552 193 140 0 chr1 232446513 232446627 -49747037 - LTR40a LTR ERVL -311 208 79 353 299 156 23 chr1 232446662 232446737 -49746927 + HAL1 LINE L1 2099 2163 -344 2332 125 0 0 chr1 232446737 232447049 -49746615 + AluSx SINE Alu 1 312 0 353 299 156 23 chr1 232447049 232447274 -49746390 + HAL1 LINE L1 2163 2439 -68 606 131 0 0 chr1 232447285 232447384 -49746280 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 642 169 0 0 chr1 232447489 232447607 -49746057 + CT-rich Low_complexity Low_complexity 2 119 0 2219 99 30 0 chr1 232447607 232447911 -49745753 - AluSp SINE Alu 0 313 1 672 248 76 0 chr1 232447961 232448171 -49745493 + L2 LINE L2 1920 2145 -1169 323 289 0 0 chr1 232448211 232448301 -49745363 - L2 LINE L2 -1399 1915 1826 1171 174 42 24 chr1 232448655 232448747 -49744917 - MER20 DNA MER1_type 0 219 130 4261 96 6 100 chr1 232448747 232449382 -49744282 - MER4A LTR ERV1 0 664 106 2216 117 7 3 chr1 232449382 232449690 -49743974 + AluSq SINE Alu 1 309 -4 4261 96 6 100 chr1 232449690 232449787 -49743877 - MER4A LTR ERV1 -558 106 1 1171 174 42 24 chr1 232449787 232449907 -49743757 - MER20 DNA MER1_type -89 130 3 465 285 125 5 chr1 232450532 232450732 -49742932 - MIR SINE MIR -21 241 18 1864 250 68 31 chr1 232450987 232451623 -49742041 + L2 LINE L2 953 1611 -1703 3146 149 17 11 chr1 232451671 232452196 -49741468 - Tigger1 DNA MER2_type -353 2065 1538 312 98 0 0 chr1 232452586 232452637 -49741027 + AluSp/q SINE Alu 253 303 0 726 185 39 22 chr1 232452649 232452827 -49740837 + L1MB2 LINE L1 5986 6166 -5 2413 88 0 0 chr1 232452827 232453122 -49740542 - AluSx SINE Alu -17 295 1 388 194 78 10 chr1 232453365 232453468 -49740196 + L1ME4a LINE L1 6008 6117 -4 2101 135 13 0 chr1 232453480 232453783 -49739881 + AluSx SINE Alu 1 307 -5 1677 164 0 21 chr1 232453804 232454085 -49739579 + AluJo SINE Alu 21 295 -17 370 309 131 6 chr1 232454318 232454493 -49739171 - MIR SINE MIR -19 243 47 641 262 63 17 chr1 232454506 232454743 -49738921 - MIR SINE MIR -1 261 14 222 340 54 20 chr1 232454904 232455051 -49738613 - MIR SINE MIR -27 235 84 600 241 15 15 chr1 232455912 232456049 -49737615 + LTR33 LTR ERVL 1 137 -384 674 238 53 39 chr1 232456108 232456314 -49737350 + LTR33 LTR ERVL 313 521 0 692 232 80 22 chr1 232456394 232456618 -49737046 - MIR SINE MIR -16 246 10 228 200 77 15 chr1 232456856 232456921 -49736743 - MER113 DNA MER1_type? -451 70 2 207 162 0 0 chr1 232457730 232457767 -49735897 + (TA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chr1 232457767 232457790 -49735874 + (TC)n Simple_repeat Simple_repeat 2 24 0 283 342 0 0 chr1 232458734 232458851 -49734813 + (TGG)n Simple_repeat Simple_repeat 1 117 0 594 301 59 78 chr1 232459746 232460113 -49733551 - L2 LINE L2 -1 3271 2919 794 227 72 0 chr1 232460113 232460307 -49733357 - MER3 DNA MER1_type -1 208 1 594 301 59 78 chr1 232460307 232460578 -49733086 - L2 LINE L2 -353 2919 2644 8132 100 13 17 chr1 232460775 232460853 -49732811 - Tigger1 DNA MER2_type -855 1563 1486 2062 138 0 10 chr1 232460853 232461158 -49732506 + AluSx SINE Alu 1 302 -10 8132 100 13 17 chr1 232461158 232462250 -49731414 - Tigger1 DNA MER2_type -932 1486 392 2383 91 7 0 chr1 232462250 232462559 -49731105 - AluSp SINE Alu -2 311 1 2347 114 0 13 chr1 232462565 232462881 -49730783 - AluSx SINE Alu 0 312 1 8132 100 13 17 chr1 232462881 232463293 -49730371 - Tigger1 DNA MER2_type -2031 387 1 228 135 0 0 chr1 232463904 232463941 -49729723 + (TC)n Simple_repeat Simple_repeat 2 38 0 1994 133 6 37 chr1 232463941 232464263 -49729401 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 232464275 232464298 -49729366 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2127 104 0 14 chr1 232464301 232464589 -49729075 - AluSg SINE Alu -26 284 1 272 27 27 0 chr1 232464603 232464640 -49729024 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 2149 107 21 0 chr1 232464642 232464931 -49728733 - AluSx SINE Alu -1 311 17 2547 65 0 3 chr1 232465175 232465482 -49728182 - AluY SINE Alu -5 306 1 496 211 0 44 chr1 232465935 232466049 -49727615 - MER94 DNA DNA 0 134 26 2457 74 7 10 chr1 232466049 232466359 -49727305 + AluSp SINE Alu 1 309 -4 1902 150 27 3 chr1 232469725 232470019 -49723645 - AluSg SINE Alu -9 301 1 1127 216 35 81 chr1 232471487 232471834 -49721830 + MLT1I LTR MaLR 73 403 -6 368 324 59 26 chr1 232472169 232472488 -49721176 - L1MEc LINE L1 -5920 476 56 216 182 0 23 chr1 232472635 232472679 -49720985 + CT-rich Low_complexity Low_complexity 3 45 0 2622 123 16 9 chr1 232472792 232473224 -49720440 + L1MB3 LINE L1 1912 2346 -4038 1731 179 7 17 chr1 232473434 232473736 -49719928 - AluJb SINE Alu -12 300 2 1836 154 25 42 chr1 232473863 232474195 -49719469 - L1MA6 LINE L1 -4 6296 5969 2408 48 0 78 chr1 232474195 232474528 -49719136 - AluY SINE Alu -4 307 1 1836 154 25 42 chr1 232474528 232474551 -49719113 - L1MA6 LINE L1 -331 5969 5947 10506 200 25 16 chr1 232474638 232474923 -49718741 + L1MB3 LINE L1 3133 3414 -3005 2034 148 0 0 chr1 232474923 232475214 -49718450 + AluSx SINE Alu 10 300 -12 10506 200 25 16 chr1 232475214 232477233 -49716431 + L1MB3 LINE L1 3414 5480 -939 1967 162 7 0 chr1 232477233 232477529 -49716135 - AluJb SINE Alu -14 298 1 10506 200 25 16 chr1 232477529 232478156 -49715508 + L1MB3 LINE L1 5480 6100 -319 2366 57 3 0 chr1 232478535 232478846 -49714818 - AluSg SINE Alu 0 312 1 512 200 100 0 chr1 232479437 232479547 -49714117 - MER58A DNA MER1_type -1 223 103 1926 133 7 10 chr1 232479725 232480019 -49713645 + AluJo SINE Alu 1 293 -19 501 241 62 9 chr1 232480360 232480472 -49713192 - MER58A DNA MER1_type 0 118 1 436 182 13 0 chr1 232480550 232480627 -49713037 - FRAM/FAM SINE Alu -98 78 1 493 250 0 66 chr1 232480630 232480782 -49712882 + MER5B DNA MER1_type 37 178 0 941 285 4 19 chr1 232480814 232481074 -49712590 - MIR SINE MIR -6 256 1 32 0 0 0 chr1 232481141 232481173 -49712491 + AT_rich Low_complexity Low_complexity 1 32 0 888 127 0 0 chr1 232481173 232481291 -49712373 - FLAM_C SINE Alu -25 118 1 1774 120 88 0 chr1 232481306 232481580 -49712084 - AluSx SINE Alu -13 299 2 701 84 0 0 chr1 232481683 232481778 -49711886 - AluSc SINE Alu -2 307 213 607 232 7 26 chr1 232481906 232482057 -49711607 - LTR7 LTR ERV1 0 450 303 616 168 101 25 chr1 232482463 232482582 -49711082 - FLAM_C SINE Alu -5 128 1 1042 125 6 48 chr1 232482593 232482761 -49710903 - AluSx SINE Alu -117 195 35 963 247 36 5 chr1 232482990 232483213 -49710451 - MIR SINE MIR -20 242 13 1908 102 44 44 chr1 232483479 232483773 -49709891 - AluSg SINE Alu -16 294 1 2376 85 0 7 chr1 232484184 232484489 -49709175 + AluSg SINE Alu 1 303 -7 782 122 46 30 chr1 232484738 232484869 -49708795 - FLAM_C SINE Alu 0 133 1 28 0 0 0 chr1 232485369 232485397 -49708267 + AT_rich Low_complexity Low_complexity 1 28 0 3554 60 30 0 chr1 232485401 232485836 -49707828 - LTR7 LTR ERV1 -2 448 1 880 130 0 0 chr1 232485922 232486053 -49707611 - AluJb SINE Alu -1 311 181 2334 92 133 68 chr1 232486099 232486556 -49707108 + LTR21A LTR ERV1 1 487 -18 2551 41 0 0 chr1 232486573 232486866 -49706798 - AluY SINE Alu -18 293 1 29 60 0 0 chr1 232488413 232488463 -49705201 + AT_rich Low_complexity Low_complexity 1 50 0 308 271 62 0 chr1 232489375 232489438 -49704226 + MER5A DNA MER1_type 54 112 -66 1699 190 3 10 chr1 232489438 232489743 -49703921 - AluJb SINE Alu -9 303 1 308 271 62 0 chr1 232489743 232489790 -49703874 + MER5A DNA MER1_type 112 170 -8 2215 105 0 20 chr1 232489813 232490117 -49703547 + AluSc SINE Alu 1 298 -11 1263 174 73 0 chr1 232490315 232490533 -49703131 + MER46A DNA MER2_type 1 234 -2 3513 153 142 11 chr1 232490673 232491357 -49702307 - L1MB7 LINE L1 -41 6143 5293 2309 100 0 6 chr1 232491357 232491668 -49701996 - AluSp SINE Alu -4 309 1 3513 153 142 11 chr1 232491668 232491740 -49701924 - L1MB7 LINE L1 -891 5293 5232 216 196 0 0 chr1 232491827 232491873 -49701791 + T-rich Low_complexity Low_complexity 1 46 0 333 219 12 12 chr1 232491924 232492006 -49701658 - L1MC5 LINE L1 -58 7903 7822 333 0 0 0 chr1 232492107 232492144 -49701520 + (CA)n Simple_repeat Simple_repeat 1 37 0 274 205 79 35 chr1 232492156 232492194 -49701470 - L1MC5 LINE L1 -133 7828 7793 387 0 0 0 chr1 232492194 232492237 -49701427 + (CA)n Simple_repeat Simple_repeat 1 43 0 274 205 79 35 chr1 232492237 232492369 -49701295 - L1MC5 LINE L1 -168 7793 7622 1760 159 32 23 chr1 232492669 232492978 -49700686 - AluJo SINE Alu 0 312 1 2356 71 0 7 chr1 232493474 232493771 -49699893 - AluY SINE Alu -16 295 1 1903 76 8 0 chr1 232493774 232494011 -49699653 - AluSc SINE Alu -70 239 1 1928 118 3 70 chr1 232494279 232494592 -49699072 + AluSx SINE Alu 1 292 -20 213 231 0 0 chr1 232498381 232498433 -49695231 + T-rich Low_complexity Low_complexity 1 52 0 1519 153 30 123 chr1 232498582 232498982 -49694682 - MLT1A1 LTR MaLR -2 363 1 1278 155 53 0 chr1 232499019 232499225 -49694439 + MER46A DNA MER2_type 20 236 0 346 236 132 36 chr1 232499229 232499449 -49694215 + L1MC4 LINE L1 7572 7812 -230 22 0 0 0 chr1 232499564 232499586 -49694078 + AT_rich Low_complexity Low_complexity 1 22 0 229 182 0 0 chr1 232499951 232499995 -49693669 + (GGGTG)n Simple_repeat Simple_repeat 4 47 0 1576 196 10 13 chr1 232500984 232501285 -49692379 - AluJo SINE Alu -12 300 1 1391 142 38 25 chr1 232502021 232502260 -49691404 - AluSx SINE Alu -12 300 59 1684 127 17 55 chr1 232502468 232502759 -49690905 + AluJb SINE Alu 16 295 -17 320 300 88 69 chr1 232503215 232503622 -49690042 + L2 LINE L2 1443 1857 -1457 222 191 21 0 chr1 232503623 232503670 -49689994 + L2 LINE L2 1962 2009 -1305 2313 84 3 3 chr1 232503678 232503976 -49689688 + AluSg SINE Alu 1 298 -12 604 165 10 0 chr1 232503976 232504073 -49689591 - HY3 scRNA scRNA -3 98 1 321 276 184 12 chr1 232504238 232504401 -49689263 - MIR SINE MIR -70 192 2 500 263 88 1 chr1 232504751 232504897 -49688767 + MIR SINE MIR 6 162 -46 467 265 34 0 chr1 232504919 232505036 -49688628 + L2 LINE L2 3188 3308 -5 1627 149 40 0 chr1 232505464 232505713 -49687951 + AluSq SINE Alu 1 259 -54 1304 173 38 4 chr1 232505845 232506082 -49687582 + AluJo SINE Alu 57 301 -11 1806 148 18 0 chr1 232506325 232506602 -49687062 - AluJo SINE Alu -30 282 1 382 372 34 20 chr1 232506822 232506970 -49686694 + L2 LINE L2 3122 3271 -1 1695 178 13 30 chr1 232508061 232508365 -49685299 + AluJo SINE Alu 1 299 -13 2248 131 0 0 chr1 232509124 232509436 -49684228 + AluSx SINE Alu 1 312 0 2574 56 0 0 chr1 232509462 232509768 -49683896 - AluY SINE Alu -5 306 1 1072 168 0 0 chr1 232510103 232510270 -49683394 - AluSg/x SINE Alu -12 298 132 2318 98 7 0 chr1 232510270 232510567 -49683097 - AluSx SINE Alu -13 299 1 225 275 38 38 chr1 232511296 232511376 -49682288 - MIR SINE MIR -56 206 127 2152 119 3 0 chr1 232511379 232511674 -49681990 + AluSg SINE Alu 1 296 -14 419 216 209 14 chr1 232512628 232512776 -49680888 - MIR SINE MIR -39 223 47 1797 153 153 19 chr1 232514122 232514500 -49679164 - Tigger2a DNA MER2_type -1 433 5 26 0 0 0 chr1 232515432 232515458 -49678206 + GC_rich Low_complexity Low_complexity 1 26 0 326 254 0 0 chr1 232516628 232516687 -49676977 - L2 LINE L2 -7 3265 3207 213 211 0 0 chr1 232517596 232517648 -49676016 + (TG)n Simple_repeat Simple_repeat 2 53 0 186 286 0 0 chr1 232518620 232518669 -49674995 + L3 LINE CR1 1196 1244 -333 478 316 132 11 chr1 232519039 232519229 -49674435 + L3 LINE CR1 1345 1557 -20 1494 170 0 0 chr1 232520040 232520281 -49673383 - AluJb SINE Alu -39 273 33 378 0 0 0 chr1 232520996 232521038 -49672626 + (TG)n Simple_repeat Simple_repeat 2 43 0 1429 185 7 45 chr1 232521393 232521724 -49671940 - AluJo SINE Alu 0 312 1 253 197 24 118 chr1 232522096 232522223 -49671441 - MIR SINE MIR -46 216 102 410 282 31 55 chr1 232522431 232522594 -49671070 - MIR SINE MIR -19 243 85 1361 118 9 27 chr1 232522674 232522894 -49670770 + AluSx SINE Alu 1 216 -96 576 254 79 28 chr1 232523859 232524036 -49669628 + MIR SINE MIR 54 239 -23 222 303 91 10 chr1 232525258 232525357 -49668307 - MIR SINE MIR -82 126 20 2464 44 0 0 chr1 232528237 232528532 -49665132 - AluY SINE Alu -16 295 1 464 283 103 7 chr1 232528687 232528832 -49664832 - MIR3 SINE MIR -15 193 35 494 295 137 16 chr1 232529341 232529524 -49664140 + MIR SINE MIR 28 232 -30 180 250 0 0 chr1 232529502 232529538 -49664126 + L2 LINE L2 3215 3250 -22 * 837 103 0 62 chr1 232530217 232530362 -49663302 + AluJo SINE Alu 1 136 -176 451 228 54 67 chr1 232530415 232530564 -49663100 - MIR SINE MIR -3 259 113 2092 118 3 0 chr1 232531570 232531874 -49661790 + AluSx SINE Alu 1 305 -7 1468 122 64 37 chr1 232533147 232533443 -49660221 + AluJb SINE Alu 1 304 -8 2137 91 7 7 chr1 232533446 232533744 -49659920 + AluSx SINE Alu 3 300 -12 2385 55 16 3 chr1 232533744 232534051 -49659613 + AluY SINE Alu 1 311 0 2254 84 0 3 chr1 232534567 232534875 -49658789 - AluSg SINE Alu -3 307 1 677 202 46 17 chr1 232535059 232535232 -49658432 + L1MC/D LINE L1 5640 5817 -1991 584 211 0 32 chr1 232535449 232535572 -49658092 + FLAM_A SINE Alu 1 119 -14 31 57 0 14 chr1 232535572 232535609 -49658055 + AT_rich Low_complexity Low_complexity 1 38 -31 2033 121 0 0 chr1 232535609 232535906 -49657758 + AluSx SINE Alu 1 297 -15 31 57 0 14 chr1 232535906 232535938 -49657726 + AT_rich Low_complexity Low_complexity 38 69 0 1162 95 28 0 chr1 232536173 232536352 -49657312 - L1MA2 LINE L1 -2 6302 6119 235 194 32 32 chr1 232536479 232536572 -49657092 + (CACCC)n Simple_repeat Simple_repeat 3 95 0 212 152 22 0 chr1 232536586 232536632 -49657032 + C-rich Low_complexity Low_complexity 2 48 0 12261 140 55 91 chr1 232536800 232537172 -49656492 - L1MA2 LINE L1 -270 6034 5650 2149 107 3 0 chr1 232537172 232537462 -49656202 - AluSg SINE Alu -13 297 7 12261 140 55 91 chr1 232537462 232537806 -49655858 - L1MA2 LINE L1 -654 5650 5295 1318 168 31 65 chr1 232537806 232538128 -49655536 - AluJo SINE Alu -1 311 1 12261 140 55 91 chr1 232538128 232539056 -49654608 - L1MA2 LINE L1 -1009 5295 4335 1194 80 11 2 chr1 232539056 232539317 -49654347 - AluY SINE Alu 0 311 2 12261 140 55 91 chr1 232539317 232540034 -49653630 - L1MA2 LINE L1 -1969 4335 3594 525 32 0 0 chr1 232540034 232540097 -49653567 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 12261 140 55 91 chr1 232540097 232541295 -49652369 - L1MA2 LINE L1 -2710 3594 2350 273 237 26 13 chr1 232541307 232541383 -49652281 + LTR16B LTR ERVL 388 464 0 501 114 0 0 chr1 232541482 232541552 -49652112 - THE1C LTR MaLR 0 364 295 1122 130 0 0 chr1 232541556 232541718 -49651946 - AluSg/x SINE Alu -15 295 134 1972 133 0 7 chr1 232541720 232542021 -49651643 - AluSx SINE Alu -13 299 1 2016 132 43 0 chr1 232542021 232542324 -49651340 - THE1C LTR MaLR -59 316 1 201 39 0 0 chr1 232542337 232542363 -49651301 + (CA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr1 232542366 232542402 -49651262 + AT_rich Low_complexity Low_complexity 1 36 0 7864 29 0 0 chr1 232542402 232543322 -49650342 - L1PA4 LINE L1 -3 6152 5232 181 292 62 0 chr1 232543472 232543520 -49650144 + L2 LINE L2 3222 3272 0 247 261 0 68 chr1 232543764 232543852 -49649812 - MIR3 SINE MIR -24 184 103 1978 85 0 11 chr1 232543934 232544206 -49649458 + AluSx SINE Alu 44 312 0 710 119 0 42 chr1 232544443 232544561 -49649103 - FRAM SINE Alu -10 166 54 297 231 51 26 chr1 232544586 232544664 -49649000 + MIR3 SINE MIR 112 191 -17 304 333 7 33 chr1 232544664 232544817 -49648847 - MER102a DNA MER1_type -1 329 181 616 246 79 20 chr1 232545115 232545367 -49648297 - L1ME3A LINE L1 -218 5952 5686 431 232 119 20 chr1 232545382 232545533 -49648131 - MER112 DNA MER1_type -2 258 93 453 253 85 14 chr1 232545565 232545748 -49647916 - L1P5 LINE L1 -568 5553 5378 1794 118 72 7 chr1 232546057 232546336 -49647328 - AluSg1 SINE Alu -12 297 1 1965 109 14 3 chr1 232546341 232546626 -49647038 - AluSx SINE Alu -24 288 1 230 274 95 36 chr1 232548867 232548951 -49644713 + L2 LINE L2 3169 3257 -15 2078 122 6 10 chr1 232548970 232549281 -49644383 - AluSq SINE Alu -1 312 3 4960 121 5 25 chr1 232551474 232552248 -49641416 + L1PB3 LINE L1 5396 6154 0 2106 131 0 3 chr1 232553047 232553360 -49640304 + AluSx SINE Alu 1 312 0 2111 88 21 0 chr1 232553453 232553737 -49639927 + AluSp SINE Alu 1 290 -23 1026 176 118 61 chr1 232553935 232554248 -49639416 + Charlie4a DNA MER1_type 2 332 -176 856 170 0 15 chr1 232554627 232554762 -49638902 + FLAM_C SINE Alu 1 133 0 459 213 183 53 chr1 232554819 232554988 -49638676 + MLT1J LTR MaLR 317 507 -4 255 320 40 0 chr1 232554996 232555071 -49638593 - L2 LINE L2 -1 3271 3194 1013 196 44 63 chr1 232556524 232556794 -49636870 - LTR40b LTR ERVL -109 353 89 1388 208 31 7 chr1 232556894 232557182 -49636482 + MLT2B2 LTR ERVL 221 515 0 207 0 0 0 chr1 232557726 232557749 -49635915 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1376 161 157 23 chr1 232559562 232559823 -49633841 - AluJb SINE Alu -5 297 2 812 158 11 90 chr1 232559930 232560107 -49633557 - FRAM SINE Alu -17 159 1 1997 120 7 3 chr1 232560119 232560411 -49633253 - AluSx SINE Alu -19 293 1 200 182 0 80 chr1 232562737 232562825 -49630839 + C-rich Low_complexity Low_complexity 5 85 0 293 148 0 33 chr1 232563054 232563115 -49630549 - L2 LINE L2 -1 3312 3254 377 174 70 47 chr1 232563252 232563338 -49630326 - MER105 DNA DNA -22 182 95 305 310 95 9 chr1 232563338 232563454 -49630210 - MIR SINE MIR -116 146 21 318 306 181 0 chr1 232564200 232564344 -49629320 - MIR3 SINE MIR -8 200 31 479 307 42 30 chr1 232564407 232564573 -49629091 - MIR SINE MIR -48 214 47 180 250 95 60 chr1 232565132 232565216 -49628448 - L2 LINE L2 -47 3266 3180 696 249 26 6 chr1 232565322 232565498 -49628166 - MIR SINE MIR -48 214 35 471 224 103 0 chr1 232565495 232565611 -49628053 + L2 LINE L2 3143 3270 -2 * 1559 194 11 0 chr1 232565928 232566207 -49627457 + AluJb SINE Alu 1 282 -30 2222 112 0 6 chr1 232567244 232567557 -49626107 - AluSx SINE Alu -1 311 1 210 71 0 0 chr1 232571268 232571296 -49622368 + (T)n Simple_repeat Simple_repeat 1 28 0 436 280 33 44 chr1 232571781 232571974 -49621690 + MIR3 SINE MIR 4 187 -21 379 353 77 39 chr1 232571963 232572249 -49621415 + L3b LINE CR1 1206 1502 -81 * 912 232 73 5 chr1 232572268 232572488 -49621176 - MIR SINE MIR -8 254 20 213 264 100 27 chr1 232573697 232573807 -49619857 - MIR SINE MIR -33 229 112 239 274 0 0 chr1 232574217 232574279 -49619385 + C-rich Low_complexity Low_complexity 3 64 0 189 309 134 0 chr1 232574487 232574584 -49619080 - MIR SINE MIR -59 149 40 1013 325 38 5 chr1 232575943 232576315 -49617349 - L3 LINE CR1 -3 1574 1191 1075 210 17 4 chr1 232577584 232577817 -49615847 - MIR SINE MIR -10 252 17 195 396 19 19 chr1 232577825 232577870 -49615794 + MER5B DNA MER1_type 1 45 -133 2208 103 3 3 chr1 232577870 232578180 -49615484 + AluSx SINE Alu 1 310 -2 195 396 19 19 chr1 232578180 232578288 -49615376 + MER5B DNA MER1_type 44 154 -24 * 455 180 207 9 chr1 232578184 232578295 -49615369 - MER5A DNA MER1_type -28 161 29 589 200 92 0 chr1 232578932 232579062 -49614602 - MIR SINE MIR -81 181 40 348 24 0 0 chr1 232579291 232579332 -49614332 + (CA)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr1 232579532 232579566 -49614098 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 296 28 0 chr1 232579731 232579802 -49613862 - MIR SINE MIR -134 128 56 307 340 85 0 chr1 232581242 232581383 -49612281 - L3b LINE CR1 -120 1463 1311 506 319 97 4 chr1 232581665 232581891 -49611773 + L3 LINE CR1 1324 1570 -7 207 243 43 14 chr1 232582138 232582208 -49611456 + CT-rich Low_complexity Low_complexity 3 74 0 242 299 146 85 chr1 232582222 232582620 -49611044 - L2 LINE L2 -3 3269 2848 242 175 16 32 chr1 232582820 232582883 -49610781 + GA-rich Low_complexity Low_complexity 2 63 0 218 275 109 43 chr1 232586647 232586785 -49606879 - L2 LINE L2 -1 3312 3166 2523 48 0 10 chr1 232586815 232587126 -49606538 + AluY SINE Alu 1 308 -3 239 319 80 44 chr1 232588686 232588799 -49604865 - L3b LINE CR1 -132 1451 1335 903 263 76 13 chr1 232589173 232589477 -49604187 + MER102b DNA MER1_type 4 326 -15 451 222 144 36 chr1 232589679 232589846 -49603818 - MIR3 SINE MIR -11 197 13 382 316 59 11 chr1 232590262 232590484 -49603180 - MIR SINE MIR -7 255 20 873 240 56 0 chr1 232591123 232591319 -49602345 + L3 LINE CR1 1370 1576 -1 1469 233 58 58 chr1 232591398 232591967 -49601697 - L2 LINE L2 -1 3312 2735 192 254 55 0 chr1 232592517 232592572 -49601092 - L2 LINE L2 -76 3196 3139 268 403 15 34 chr1 232594040 232594246 -49599418 - L3 LINE CR1 -311 1266 1065 1948 146 0 16 chr1 232594916 232595224 -49598440 + AluJo SINE Alu 1 303 -9 1027 187 18 14 chr1 232595566 232595785 -49597879 - AluJo SINE Alu -7 305 86 2035 79 0 8 chr1 232595788 232596055 -49597609 - AluY SINE Alu -13 298 34 427 307 122 35 chr1 232597706 232597936 -49595728 - MIR SINE MIR -10 252 18 383 238 21 49 chr1 232598555 232598698 -49594966 - L2 LINE L2 -4 3309 3171 1962 122 88 30 chr1 232598758 232599087 -49594577 - MER7A DNA MER2_type 0 346 1 622 192 8 8 chr1 232599614 232599734 -49593930 - MIR SINE MIR -108 154 35 209 255 0 0 chr1 232600019 232600066 -49593598 - MIR SINE MIR -64 144 98 229 191 0 0 chr1 232603275 232603322 -49590342 + (TG)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr1 232603370 232603397 -49590267 + (T)n Simple_repeat Simple_repeat 1 27 0 221 291 90 30 chr1 232603671 232603805 -49589859 + L2 LINE L2 2715 2856 -458 468 250 194 5 chr1 232604146 232604362 -49589302 - MIR SINE MIR 0 262 6 241 350 60 0 chr1 232604935 232605035 -49588629 - L2 LINE L2 -894 2420 2315 216 0 0 0 chr1 232607887 232607911 -49585753 + (A)n Simple_repeat Simple_repeat 1 24 0 360 43 0 0 chr1 232608894 232608940 -49584724 + (TG)n Simple_repeat Simple_repeat 1 46 0 236 237 105 13 chr1 232611925 232612001 -49581663 - L2 LINE L2 -44 3269 3187 189 283 87 11 chr1 232612114 232612206 -49581458 - L3 LINE CR1 -211 1366 1268 2294 94 7 3 chr1 232612507 232612814 -49580850 + AluSg1 SINE Alu 1 308 -1 209 341 171 12 chr1 232613794 232613964 -49579700 - L2 LINE L2 0 3272 3076 238 281 0 61 chr1 232614004 232614086 -49579578 - L2 LINE L2 -1 3312 3236 201 105 0 53 chr1 232615093 232615131 -49578533 + (GGGTG)n Simple_repeat Simple_repeat 5 40 0 649 261 44 0 chr1 232615233 232615413 -49578251 - MIR3 SINE MIR -2 206 19 222 267 47 70 chr1 232616138 232616224 -49577440 + MIR3 SINE MIR 94 177 -31 635 342 44 36 chr1 232617066 232617674 -49575990 + L2 LINE L2 1610 2222 -1092 288 304 29 35 chr1 232617732 232617903 -49575761 + L2 LINE L2 2218 2387 -927 1777 170 0 24 chr1 232618021 232618348 -49575316 + AluJb SINE Alu 1 320 0 918 264 102 25 chr1 232618356 232618750 -49574914 + L1MEc LINE L1 499 922 -5474 1848 159 51 7 chr1 232618752 232619048 -49574616 + AluJb SINE Alu 3 311 -1 1119 198 60 143 chr1 232619110 232619530 -49574134 - MLT1B LTR MaLR -2 388 4 4034 237 91 13 chr1 232619532 232621333 -49572331 + L1MEc LINE L1 1078 2965 -3250 319 299 188 13 chr1 232621380 232621534 -49572130 - MIR SINE MIR -76 186 6 210 333 58 11 chr1 232622132 232622219 -49571445 + MIR SINE MIR 18 108 -154 661 276 79 33 chr1 232622692 232622792 -49570872 + MIR SINE MIR 18 112 -150 2538 134 42 3 chr1 232622792 232623173 -49570491 - MSTD LTR MaLR 0 396 1 661 276 79 33 chr1 232623173 232623286 -49570378 + MIR SINE MIR 112 241 -21 1785 180 3 3 chr1 232623293 232623588 -49570076 - AluJo SINE Alu -17 295 1 198 302 58 47 chr1 232623672 232623758 -49569906 + L2 LINE L2 3100 3186 -86 304 236 213 8 chr1 232624151 232624278 -49569386 + MIR SINE MIR 2 154 -108 181 200 0 0 chr1 232624298 232624338 -49569326 + L2 LINE L2 3274 3313 0 284 243 27 40 chr1 232624639 232624713 -49568951 + MIR SINE MIR 24 96 -112 344 188 0 0 chr1 232624798 232624867 -49568797 - MIR SINE MIR -116 146 78 299 341 0 0 chr1 232624918 232625006 -49568658 + MIR3 SINE MIR 108 195 -13 180 0 0 0 chr1 232625858 232625878 -49567786 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 472 291 93 34 chr1 232626024 232626151 -49567513 - MIR SINE MIR -7 255 137 2082 116 114 62 chr1 232626151 232626380 -49567284 - MSTA LTR MaLR 0 428 166 2258 95 0 7 chr1 232626380 232626691 -49566973 + AluSg SINE Alu 1 309 0 2082 116 114 62 chr1 232626691 232626864 -49566800 - MSTA LTR MaLR -262 166 3 472 291 93 34 chr1 232626864 232626973 -49566691 - MIR SINE MIR -125 137 5 322 261 117 9 chr1 232627683 232627794 -49565870 - MIR3 SINE MIR -1 207 85 324 0 0 0 chr1 232627923 232627959 -49565705 + (CA)n Simple_repeat Simple_repeat 2 37 0 389 256 31 10 chr1 232628168 232628311 -49565353 + MIR SINE MIR 64 262 0 1450 174 27 120 chr1 232629111 232629519 -49564145 + MLT1A2 LTR MaLR 1 370 -4 4696 260 112 32 chr1 232629946 232630596 -49563068 - L1ME3A LINE L1 -213 5934 5337 216 0 0 0 chr1 232630596 232630620 -49563044 + (TG)n Simple_repeat Simple_repeat 2 25 0 4696 260 112 32 chr1 232630620 232632900 -49560764 - L1ME3A LINE L1 -810 5337 2743 296 286 13 0 chr1 232632900 232632977 -49560687 + L2 LINE L2 3175 3252 -20 307 167 14 14 chr1 232633094 232633166 -49560498 - L1M4 LINE L1 -1537 4609 4538 8038 174 25 16 chr1 232633288 232635952 -49557712 + L1PA16 LINE L1 3479 6164 -2 632 280 17 29 chr1 232635945 232636184 -49557480 - L1ME3A LINE L1 -5439 680 445 * 383 309 39 17 chr1 232636388 232636569 -49557095 - L1ME3A LINE L1 -5934 185 1 786 219 127 10 chr1 232637073 232637278 -49556386 + MIR SINE MIR 5 233 -29 1967 171 13 3 chr1 232637407 232637716 -49555948 - AluJo SINE Alu 0 312 1 358 159 48 0 chr1 232638491 232638554 -49555110 - MIR SINE MIR -10 252 187 388 340 69 23 chr1 232638955 232639217 -49554447 + L2 LINE L2 2508 2781 -533 264 351 45 0 chr1 232639308 232639419 -49554245 + L2 LINE L2 2933 3048 -224 286 248 33 33 chr1 232639750 232639871 -49553793 + CT-rich Low_complexity Low_complexity 1 121 0 495 292 82 0 chr1 232640039 232640265 -49553399 - L1ME4a LINE L1 -196 5925 5678 240 293 12 12 chr1 232640267 232640349 -49553315 + T-rich Low_complexity Low_complexity 2 83 0 263 259 82 0 chr1 232640611 232640696 -49552968 + L1ME4a LINE L1 5709 5800 -364 241 276 13 0 chr1 232640840 232640916 -49552748 + (TA)n Simple_repeat Simple_repeat 1 77 0 240 231 0 77 chr1 232640917 232641021 -49552643 + L1ME4a LINE L1 5923 6018 -103 580 318 51 8 chr1 232642138 232642374 -49551290 - MIR SINE MIR -1 261 16 2096 91 4 0 chr1 232642542 232642807 -49550857 + AluSq SINE Alu 3 268 -45 303 255 32 21 chr1 232643363 232643457 -49550207 + MIR SINE MIR 117 211 -51 271 312 143 33 chr1 232644403 232644568 -49549096 + MIR3 SINE MIR 14 190 -61 3015 136 9 54 chr1 232644609 232644661 -49549003 + L1MB7 LINE L1 5642 5695 -489 2410 98 0 3 chr1 232644661 232644968 -49548696 + AluSq SINE Alu 1 306 -7 3015 136 9 54 chr1 232644968 232645474 -49548190 + L1MB7 LINE L1 5695 6175 -9 295 302 36 27 chr1 232647331 232647451 -49546213 - MIR SINE MIR -60 148 40 2159 115 0 0 chr1 232648048 232648365 -49545299 + AluSg SINE Alu 1 317 0 323 212 97 35 chr1 232648812 232648925 -49544739 + MIR3 SINE MIR 48 167 -41 333 294 28 91 chr1 232649167 232649310 -49544354 + L2 LINE L2 3139 3272 0 234 320 48 29 chr1 232650415 232650518 -49543146 - MIR SINE MIR -45 217 113 518 205 0 66 chr1 232650901 232651023 -49542641 - MIR SINE MIR -74 134 21 428 226 89 53 chr1 232652191 232652381 -49541283 + MIR3 SINE MIR 1 197 -11 259 293 53 5 chr1 232652433 232652563 -49541101 + MIR SINE MIR 87 225 -37 224 222 0 0 chr1 232652892 232652937 -49540727 + GA-rich Low_complexity Low_complexity 3 47 0 21 0 0 0 chr1 232652946 232652967 -49540697 + GC_rich Low_complexity Low_complexity 1 21 0 571 271 60 47 chr1 232656166 232656396 -49537268 + MIR SINE MIR 6 238 -24 203 196 22 0 chr1 232656510 232656556 -49537108 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 319 50 43 chr1 232656589 232656730 -49536934 + L2 LINE L2 3123 3264 -8 618 189 22 113 chr1 232657704 232657831 -49535833 + MIR3 SINE MIR 34 140 -68 2064 144 0 13 chr1 232657831 232658143 -49535521 + AluSx SINE Alu 5 312 0 618 189 22 113 chr1 232658143 232658200 -49535464 + MIR3 SINE MIR 140 201 -7 411 241 99 134 chr1 232658280 232658380 -49535284 - MIR SINE MIR -30 232 130 2425 93 0 3 chr1 232658380 232658681 -49534983 - AluSx SINE Alu -12 300 1 411 241 99 134 chr1 232658681 232658812 -49534852 - MIR SINE MIR -132 130 9 201 283 120 43 chr1 232659356 232659448 -49534216 - MIR3 SINE MIR -24 184 86 252 232 141 49 chr1 232659941 232659974 -49533690 - HAL1b LINE L1 -7 1341 1309 679 201 96 20 chr1 232659974 232660223 -49533441 - L1ME4a LINE L1 -65 6056 1187 419 321 65 72 chr1 232660226 232660503 -49533161 + L2 LINE L2 2998 3272 0 301 325 0 0 chr1 232660510 232660587 -49533077 - L1ME LINE L1 -338 5783 5707 317 71 18 54 chr1 232660587 232660643 -49533021 + L1PA13 LINE L1 6101 6154 -9 2234 121 3 0 chr1 232660643 232660940 -49532724 + AluSx SINE Alu 1 298 -14 382 329 27 27 chr1 232661723 232661872 -49531792 - L2 LINE L2 0 3272 3124 219 114 0 0 chr1 232662113 232662148 -49531516 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1596 249 57 40 chr1 232662148 232662911 -49530753 - L2 LINE L2 -13 3300 2527 1177 262 69 0 chr1 232662935 232663298 -49530366 - L1ME3 LINE L1 -7 6155 5768 4310 222 118 28 chr1 232663299 232664079 -49529585 - L2 LINE L2 -769 2545 1599 2268 95 0 0 chr1 232664079 232664385 -49529279 - AluSx SINE Alu 0 306 1 4310 222 118 28 chr1 232664385 232664899 -49528765 - L2 LINE L2 -1715 1599 1133 205 265 0 73 chr1 232664974 232665042 -49528622 - L2 LINE L2 -93 3220 3158 340 294 18 0 chr1 232665172 232665281 -49528383 - L2 LINE L2 -510 2804 2694 490 262 14 21 chr1 232665281 232665426 -49528238 + L1M4 LINE L1 3728 3871 -2275 532 299 152 11 chr1 232665426 232665787 -49527877 - L2 LINE L2 -612 2702 2291 2230 119 0 7 chr1 232666839 232667149 -49526515 - AluSx SINE Alu -4 308 1 674 262 96 18 chr1 232667231 232667460 -49526204 + MIR SINE MIR 16 262 0 286 246 25 76 chr1 232667559 232667677 -49525987 + L2 LINE L2 3202 3313 0 238 286 124 9 chr1 232667846 232667951 -49525713 - MIR3 SINE MIR -89 119 3 1050 185 103 26 chr1 232668356 232668717 -49524947 - MSTC LTR MaLR 0 428 11 219 36 0 0 chr1 232668806 232668834 -49524830 + (TG)n Simple_repeat Simple_repeat 1 28 0 369 0 0 0 chr1 232669348 232669389 -49524275 + (CA)n Simple_repeat Simple_repeat 2 42 0 320 277 0 0 chr1 232669394 232669477 -49524187 + L2 LINE L2 2977 3059 -213 294 267 99 0 chr1 232669761 232669847 -49523817 - MIR SINE MIR -95 167 72 300 341 45 17 chr1 232669847 232670021 -49523643 + MIR SINE MIR 3 182 -80 409 277 75 38 chr1 232670832 232670991 -49522673 + MIR SINE MIR 23 187 -75 1753 184 10 3 chr1 232671613 232671923 -49521741 + AluJo SINE Alu 1 312 0 427 271 29 41 chr1 232672266 232672426 -49521238 + MIR3 SINE MIR 3 162 -65 596 206 161 0 chr1 232672798 232672953 -49520711 + MER5A DNA MER1_type 4 183 -6 455 165 0 70 chr1 232673070 232673185 -49520479 + L1MA7 LINE L1 6185 6291 0 322 286 36 24 chr1 232673195 232673208 -49520456 + MIR SINE MIR 14 25 -183 2055 115 10 7 chr1 232673208 232673504 -49520160 + AluSq SINE Alu 6 302 -11 322 286 36 24 chr1 232673504 232673626 -49520038 + MIR SINE MIR 25 148 -60 231 274 0 0 chr1 232673694 232673745 -49519919 - MIR SINE MIR -62 146 96 2062 122 0 3 chr1 232674150 232674444 -49519220 - AluSx SINE Alu -19 293 1 250 345 35 21 chr1 232674756 232674901 -49518763 + L3b LINE CR1 1278 1424 -159 520 187 52 0 chr1 232675056 232675211 -49518453 - L1MCa LINE L1 -3990 2436 2274 362 291 39 31 chr1 232675211 232675338 -49518326 - L2 LINE L2 -14 3299 3172 279 368 59 0 chr1 232675929 232676065 -49517599 + L3b LINE CR1 1342 1485 -98 271 354 50 0 chr1 232676927 232677026 -49516638 - MIR SINE MIR -60 148 45 324 64 0 0 chr1 232677041 232677088 -49516576 + (TTCA)n Simple_repeat Simple_repeat 2 48 0 333 341 37 0 chr1 232677356 232677491 -49516173 - MIR3 SINE MIR -35 173 34 186 325 113 0 chr1 232678526 232678606 -49515058 + L2 LINE L2 3140 3228 -44 759 244 128 0 chr1 232679616 232679874 -49513790 - LTR33A LTR ERVL -7 516 226 2085 98 22 0 chr1 232680283 232680606 -49513058 - AluSx SINE Alu 0 331 3 614 288 128 58 chr1 232681334 232681467 -49512197 - L2 LINE L2 0 3313 3191 183 42 0 0 chr1 232681467 232681491 -49512173 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 614 288 128 58 chr1 232681491 232681809 -49511855 - L2 LINE L2 -122 3191 2830 998 291 132 25 chr1 232681850 232681931 -49511733 + L2 LINE L2 2412 2483 -830 1930 185 79 3 chr1 232681931 232682299 -49511365 - MSTD LTR MaLR 0 396 1 7444 214 86 25 chr1 232682299 232683932 -49509732 - MSTD-int LTR MaLR 0 1735 2 2287 164 10 25 chr1 232683934 232684336 -49509328 - MSTD LTR MaLR 0 396 1 998 291 132 25 chr1 232684336 232685062 -49508602 + L2 LINE L2 2483 3312 -1 448 344 30 56 chr1 232685344 232685501 -49508163 + MIR SINE MIR 5 165 -97 1489 130 30 4 chr1 232685501 232685731 -49507933 - MER46A DNA MER2_type 0 236 1 448 344 30 56 chr1 232685731 232685797 -49507867 + MIR SINE MIR 165 220 -42 1784 155 14 7 chr1 232685797 232686094 -49507570 + AluJo SINE Alu 1 299 -13 448 344 30 56 chr1 232686094 232686134 -49507530 + MIR SINE MIR 220 260 -2 742 175 7 22 chr1 232686593 232686730 -49506934 + AluJo SINE Alu 5 139 -173 2276 83 3 13 chr1 232686839 232687141 -49506523 - AluSp SINE Alu -14 299 1 188 206 274 14 chr1 232688521 232688594 -49505070 - MIR SINE MIR -51 211 120 222 233 55 14 chr1 232688662 232688735 -49504929 + L3b LINE CR1 1300 1375 -208 257 321 12 0 chr1 232688856 232688937 -49504727 + MIR3 SINE MIR 113 194 -14 436 269 104 28 chr1 232689503 232689685 -49503979 + L2 LINE L2 3118 3313 0 297 279 51 0 chr1 232690050 232690129 -49503535 + MIR SINE MIR 62 144 -118 199 311 83 45 chr1 232693511 232693643 -49500021 - MIR SINE MIR -45 217 81 247 277 134 50 chr1 232695291 232695410 -49498254 + MARNA DNA Mariner 449 577 -9 624 222 150 0 chr1 232695937 232696090 -49497574 + MER5A DNA MER1_type 11 186 -3 333 294 60 34 chr1 232696090 232696260 -49497404 - MIR3 SINE MIR -14 194 25 192 204 41 0 chr1 232699938 232699987 -49493677 + MIR SINE MIR 81 131 -77 256 226 24 36 chr1 232700058 232700142 -49493522 - MIR SINE MIR -70 138 56 508 281 131 36 chr1 232701983 232702319 -49491345 + L1ME3A LINE L1 5478 5841 -329 285 340 40 15 chr1 232702470 232702670 -49490994 + L1ME3A LINE L1 5963 6167 -3 284 344 104 25 chr1 232703634 232703797 -49489867 + L3 LINE CR1 1398 1573 -4 185 265 132 0 chr1 232705405 232705473 -49488191 - MIR SINE MIR -166 96 20 256 358 63 0 chr1 232706277 232706372 -49487292 + MIR SINE MIR 111 211 -51 1951 116 56 0 chr1 232706607 232706892 -49486772 + AluSg SINE Alu 1 301 -9 537 224 7 28 chr1 232707719 232707911 -49485753 - MIR SINE MIR -43 219 37 520 277 121 19 chr1 232709209 232709415 -49484249 + MIR SINE MIR 24 250 -12 245 333 198 0 chr1 232709590 232709686 -49483978 + MIR SINE MIR 16 130 -78 255 291 58 0 chr1 232709949 232710035 -49483629 + L3 LINE CR1 1463 1553 -24 197 355 58 43 chr1 232711125 232711263 -49482401 - L3b LINE CR1 -103 1480 1341 243 0 0 0 chr1 232712742 232712769 -49480895 + (T)n Simple_repeat Simple_repeat 1 27 0 262 347 91 0 chr1 232712981 232713102 -49480562 + L2 LINE L2 2690 2821 -493 214 93 23 23 chr1 232713314 232713357 -49480307 + (TC)n Simple_repeat Simple_repeat 2 44 0 2330 206 18 20 chr1 232713978 232714488 -49479176 - LTR40a LTR ERVL 0 519 11 461 267 60 114 chr1 232714529 232714844 -49478820 + L2 LINE L2 2974 3271 -1 382 273 13 82 chr1 232715041 232715229 -49478435 - L2 LINE L2 -9 3304 3127 196 301 64 30 chr1 232715246 232715381 -49478283 - L2 LINE L2 -307 2965 2837 1061 146 0 39 chr1 232715880 232716058 -49477606 - AluJb SINE Alu -6 306 136 351 0 0 0 chr1 232716590 232716629 -49477035 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2951 145 23 4 chr1 232716752 232717228 -49476436 + MER31A LTR ERV1 1 485 0 3581 178 58 55 chr1 232717464 232718327 -49475337 - MER21A LTR ERV1 -20 911 46 719 118 13 20 chr1 232718658 232718811 -49474853 + Charlie5 DNA MER1_type 2337 2488 -124 21 0 0 0 chr1 232718899 232718920 -49474744 + AT_rich Low_complexity Low_complexity 1 21 0 499 153 31 0 chr1 232719048 232719146 -49474518 - MER58 DNA MER1_type -68 273 173 2491 57 0 25 chr1 232719147 232719497 -49474167 + AluY SINE Alu 1 311 0 1755 162 0 40 chr1 232720116 232720438 -49473226 - AluSx SINE Alu 0 310 1 1709 183 3 14 chr1 232720445 232720734 -49472930 - AluJb SINE Alu -25 287 2 393 97 0 0 chr1 232721419 232721481 -49472183 - L1MA4 LINE L1 -143 6157 6096 270 0 0 0 chr1 232722995 232723025 -49470639 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 269 209 0 chr1 232723291 232723358 -49470306 + MIR SINE MIR 162 242 -20 2060 125 32 0 chr1 232723582 232723861 -49469803 + AluSx SINE Alu 3 290 -22 2687 193 20 4 chr1 232724025 232724522 -49469142 + MLT1D LTR MaLR 1 505 0 250 240 154 10 chr1 232724525 232724629 -49469035 - MIR SINE MIR -109 153 35 280 315 40 38 chr1 232725567 232725703 -49467961 - MIR SINE MIR -59 149 29 277 215 31 0 chr1 232726216 232726281 -49467383 - L2 LINE L2 -1 3312 3246 * 1564 290 76 46 chr1 232726267 232727240 -49466424 - L2 LINE L2 -169 3103 2080 182 337 124 28 chr1 232727256 232727434 -49466230 - L2 LINE L2 -6 3266 3072 2223 115 0 3 chr1 232727534 232727830 -49465834 + AluSc SINE Alu 1 295 -14 195 329 112 53 chr1 232728720 232728872 -49464792 + L2 LINE L2 3112 3272 0 674 299 95 74 chr1 232729018 232729164 -49464500 - L2 LINE L2 0 3313 3172 203 0 37 0 chr1 232729164 232729191 -49464473 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 674 299 95 74 chr1 232729191 232729476 -49464188 - L2 LINE L2 -141 3172 2873 197 287 194 28 chr1 232729569 232729677 -49463987 + MIR SINE MIR 6 131 -131 225 314 0 41 chr1 232729889 232730010 -49463654 + CT-rich Low_complexity Low_complexity 3 118 0 293 230 27 0 chr1 232730886 232730960 -49462704 - MIR3 SINE MIR -43 165 90 2776 124 9 34 chr1 232732312 232732330 -49461334 - MER57B LTR ERV1 0 434 417 2143 118 0 0 chr1 232732330 232732609 -49461055 + AluSx SINE Alu 1 279 -33 244 0 27 27 chr1 232732611 232732648 -49461016 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2776 124 9 34 chr1 232732648 232733071 -49460593 - MER57B LTR ERV1 -18 416 1 1352 295 65 47 chr1 232733576 232734609 -49459055 + L1M4 LINE L1 3443 4494 -1652 705 127 153 8 chr1 232734616 232734734 -49458930 + AluJo SINE Alu 2 136 -176 1269 312 83 10 chr1 232734734 232735990 -49457674 + L1M2 LINE L1 4477 5844 -349 235 131 33 33 chr1 232735996 232736057 -49457607 + L1ME3A LINE L1 5891 5951 -219 513 235 46 46 chr1 232736765 232736918 -49456746 + MER97b DNA MER1_type? 20 172 -881 2213 93 0 7 chr1 232736942 232737244 -49456420 - AluSg SINE Alu 0 305 6 319 252 155 29 chr1 232737305 232737408 -49456256 + L2 LINE L2 3146 3261 -11 210 324 74 56 chr1 232738098 232738382 -49455282 - L2 LINE L2 -86 3186 2898 371 330 91 18 chr1 232738934 232739155 -49454509 + L2 LINE L2 3012 3248 -65 1987 154 0 0 chr1 232739270 232739562 -49454102 + AluJb SINE Alu 1 292 -20 1569 96 0 14 chr1 232739566 232739826 -49453838 + AluSg/x SINE Alu 104 360 0 354 306 65 62 chr1 232740005 232740328 -49453336 - L2 LINE L2 -447 2867 2544 224 366 10 0 chr1 232741137 232741238 -49452426 + MIR SINE MIR 118 219 -43 470 209 9 35 chr1 232745049 232745164 -49448500 - L2 LINE L2 -3 3310 3199 439 288 24 0 chr1 232745156 232745281 -49448383 + MIR SINE MIR 95 222 -40 * 261 323 0 15 chr1 232745342 232745407 -49448257 + L2 LINE L2 3207 3270 -43 236 329 114 0 chr1 232745761 232745840 -49447824 - MER91A DNA MER1_type -19 177 90 227 386 124 0 chr1 232745841 232745986 -49447678 - MER91A DNA MER1_type -22 174 12 1527 197 53 10 chr1 232746313 232746612 -49447052 + AluJo SINE Alu 1 312 0 366 289 176 13 chr1 232747599 232747758 -49445906 - MER5A DNA MER1_type -1 188 4 21 0 0 0 chr1 232749296 232749317 -49444347 + AT_rich Low_complexity Low_complexity 1 21 0 201 268 0 0 chr1 232749709 232749750 -49443914 - MIR SINE MIR -60 148 108 437 266 56 28 chr1 232750424 232750567 -49443097 - MIR3 SINE MIR -25 183 37 187 298 101 32 chr1 232751032 232751190 -49442474 - MIR3 SINE MIR -4 204 36 198 298 184 24 chr1 232751739 232751907 -49441757 + MIR3 SINE MIR 13 207 -1 487 221 181 75 chr1 232752418 232752617 -49441047 + MIR SINE MIR 3 222 -40 236 191 175 0 chr1 232752629 232752692 -49440972 - MIR SINE MIR -43 219 146 210 233 241 17 chr1 232754949 232755065 -49438599 + MIR3 SINE MIR 11 152 -56 2420 94 10 0 chr1 232755208 232755515 -49438149 + AluSp SINE Alu 1 310 -3 897 258 101 44 chr1 232755534 232755921 -49437743 - MLT1C LTR MaLR 0 467 59 551 246 116 0 chr1 232756144 232756282 -49437382 + MIR SINE MIR 27 180 -82 345 299 5 11 chr1 232756795 232756979 -49436685 + L1M4 LINE L1 4254 4436 -1710 345 365 171 0 chr1 232757132 232757343 -49436321 + L1M4 LINE L1 4734 4980 -1166 472 244 38 7 chr1 232758414 232758555 -49435109 + MIR SINE MIR 67 212 -50 558 275 174 12 chr1 232758771 232759116 -49434548 + L2 LINE L2 2387 2787 -527 2636 54 0 0 chr1 232759168 232759499 -49434165 + HERVK11 LTR ERVK 7623 7953 0 6997 115 25 16 chr1 232759499 232760560 -49433104 + MER11C LTR ERVK 1 1071 0 710 249 203 19 chr1 232760560 232760737 -49432927 + L2 LINE L2 2934 3077 -236 207 0 0 0 chr1 232760737 232760760 -49432904 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 710 249 203 19 chr1 232760760 232760903 -49432761 + L2 LINE L2 3077 3313 0 486 202 11 0 chr1 232760946 232761035 -49432629 + MER21B LTR ERV1 1 90 -773 889 221 181 4 chr1 232761057 232761306 -49432358 + MER21B LTR ERV1 19 311 -552 632 175 0 0 chr1 232761314 232761411 -49432253 + AluJ/FLAM SINE Alu 2 98 -214 276 30 0 0 chr1 232761459 232761492 -49432172 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2087 203 95 8 chr1 232761503 232762006 -49431658 + MER21B LTR ERV1 317 863 0 493 271 141 82 chr1 232762018 232762458 -49431206 + L2 LINE L2 2844 3309 -4 279 259 35 0 chr1 232763073 232763158 -49430506 + CT-rich Low_complexity Low_complexity 2 89 0 501 197 51 90 chr1 232763338 232763516 -49430148 + HAL1 LINE L1 17 187 -2320 469 243 136 72 chr1 232763889 232764263 -49429401 + HAL1 LINE L1 535 932 -1575 843 130 34 7 chr1 232764363 232764509 -49429155 + L1MB1 LINE L1 6017 6166 -2 291 323 86 0 chr1 232764529 232764622 -49429042 - L2 LINE L2 -19 3253 3153 1293 205 57 110 chr1 232765316 232765666 -49427998 + L1MC4 LINE L1 202 569 -5476 979 42 0 0 chr1 232765666 232765786 -49427878 + L1PA2 LINE L1 6035 6154 -1 1293 205 57 110 chr1 232765786 232765907 -49427757 + L1MC4 LINE L1 569 634 -5411 2373 88 0 3 chr1 232765907 232766202 -49427462 + AluSg SINE Alu 1 294 -16 1293 205 57 110 chr1 232766202 232766321 -49427343 + L1MC4 LINE L1 634 758 -5287 209 264 31 86 chr1 232766361 232766524 -49427140 + L2 LINE L2 1927 2080 -1234 6829 82 20 4 chr1 232766525 232767542 -49426122 - L1PA11 LINE L1 0 6174 5154 348 186 8 108 chr1 232767542 232767671 -49425993 + L1MC4 LINE L1 726 841 -5204 * 1364 220 98 3 chr1 232767661 232768039 -49425625 + L1M4 LINE L1 3070 3483 -2663 21091 61 2 3 chr1 232768248 232770962 -49422702 + L1P LINE L1 2320 5030 -1116 375 155 0 0 chr1 232770963 232771021 -49422643 + MER69 DNA AcHobo 508 565 -661 2153 117 0 0 chr1 232771033 232771332 -49422332 - AluSg SINE Alu -11 299 1 273 254 14 0 chr1 232772193 232772264 -49421400 - L1MEd LINE L1 -5452 667 596 2241 89 0 0 chr1 232772496 232772787 -49420877 - AluSg SINE Alu -17 293 3 1266 159 71 65 chr1 232773596 232773905 -49419759 - AluJo SINE Alu -1 311 1 1268 99 0 11 chr1 232773938 232774119 -49419545 - AluSx SINE Alu -17 293 115 4091 81 35 0 chr1 232774249 232774827 -49418837 - SVA Other Other -118 1268 671 868 76 15 8 chr1 232774832 232774964 -49418700 - AluSx SINE Alu -180 133 1 32 0 0 0 chr1 232775124 232775156 -49418508 + AT_rich Low_complexity Low_complexity 1 32 0 233 238 119 40 chr1 232775175 232775326 -49418338 - HAL1b LINE L1 -598 750 588 450 234 63 0 chr1 232775389 232775500 -49418164 + LTR41 LTR ERVL 70 187 -586 872 123 0 0 chr1 232776165 232776287 -49417377 + AluJ SINE Alu 1 122 -190 292 217 0 22 chr1 232776298 232776390 -49417274 - L1MC4 LINE L1 -1339 6703 6614 324 193 97 16 chr1 232776397 232776479 -49417185 + L1MC4 LINE L1 2133 7121 -1339 978 171 0 6 chr1 232776488 232776663 -49417001 + AluJ SINE Alu 130 303 -9 354 303 0 20 chr1 232777487 232777586 -49416078 - MIR SINE MIR -10 252 156 1008 259 120 32 chr1 232777595 232777996 -49415668 - LTR16A1 LTR ERVL -12 445 10 748 280 54 17 chr1 232779096 232779335 -49414329 - MLT1J LTR MaLR -263 248 1 709 256 42 5 chr1 232779716 232779907 -49413757 - MIR SINE MIR -60 202 5 311 219 98 12 chr1 232780981 232781063 -49412601 + MIR SINE MIR 42 130 -78 293 217 108 0 chr1 232782545 232782628 -49411036 - MIR SINE MIR -133 129 38 404 257 108 7 chr1 232783048 232783196 -49410468 + MIR SINE MIR 21 183 -79 1289 162 147 15 chr1 232783467 232783739 -49409925 - AluSg1 SINE Alu -1 308 1 311 273 82 50 chr1 232783891 232784100 -49409564 + MIR SINE MIR 38 258 -4 2315 77 3 0 chr1 232784103 232784401 -49409263 + AluY SINE Alu 1 299 -12 1897 92 8 0 chr1 232785245 232785496 -49408168 + AluSx SINE Alu 46 298 -14 235 162 40 0 chr1 232785531 232785605 -49408059 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 206 346 77 0 chr1 232785687 232785765 -49407899 - L3b LINE CR1 -11 1572 1489 654 280 94 72 chr1 232786355 232786769 -49406895 + L2 LINE L2 2850 3272 0 323 239 65 11 chr1 232786912 232787004 -49406660 + MIR SINE MIR 64 160 -102 2300 68 3 16 chr1 232787010 232787317 -49406347 + AluY SINE Alu 1 303 -8 748 253 176 58 chr1 232787391 232787898 -49405766 + L2 LINE L2 2476 3071 -242 1722 149 13 16 chr1 232787898 232788207 -49405457 - AluSx SINE Alu -4 308 1 748 253 176 58 chr1 232788207 232788483 -49405181 + L2 LINE L2 3071 3313 0 849 174 39 22 chr1 232788957 232789081 -49404583 + AluJo SINE Alu 2 131 -181 198 0 0 0 chr1 232789081 232789103 -49404561 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 849 174 39 22 chr1 232789103 232789156 -49404508 + AluJo SINE Alu 131 182 -130 401 300 156 16 chr1 232790813 232791025 -49402639 + MIR SINE MIR 10 244 -18 1684 175 38 0 chr1 232791025 232791317 -49402347 + AluJb SINE Alu 1 303 -9 932 215 17 0 chr1 232791346 232791518 -49402146 + FAM SINE Alu 1 175 0 207 340 101 52 chr1 232791529 232791797 -49401867 + L2 LINE L2 2976 3256 -16 269 279 25 13 chr1 232791916 232791995 -49401669 - MIR3 SINE MIR -19 189 110 186 293 181 17 chr1 232792576 232792692 -49400972 + MIR SINE MIR 117 251 -11 24 53 0 0 chr1 232792909 232792947 -49400717 + AT_rich Low_complexity Low_complexity 1 38 0 804 150 0 0 chr1 232792949 232793076 -49400588 + FLAM_C SINE Alu 17 143 0 490 262 195 7 chr1 232793198 232793347 -49400317 - MIR SINE MIR -48 214 38 263 264 64 56 chr1 232794442 232794567 -49399097 - MIR SINE MIR -39 223 98 14724 121 8 18 chr1 232795198 232796001 -49397663 - L1P LINE L1 -3944 2202 1393 7688 28 6 0 chr1 232796001 232797478 -49396186 + L1PA3 LINE L1 4674 6155 0 14724 121 8 18 chr1 232797478 232798888 -49394776 - L1P LINE L1 -4753 1393 11 291 71 0 0 chr1 232798953 232798995 -49394669 + (T)n Simple_repeat Simple_repeat 1 42 0 219 140 0 0 chr1 232799130 232799180 -49394484 + (CAT)n Simple_repeat Simple_repeat 2 51 0 5475 101 13 0 chr1 232799640 232800405 -49393259 - Tigger1 DNA MER2_type -626 1792 1018 2729 226 62 14 chr1 232800507 232800829 -49392835 + L1MC2 LINE L1 4589 4894 -1252 2624 214 84 21 chr1 232800829 232801398 -49392266 - MER77 LTR ERV1 0 605 1 2729 226 62 14 chr1 232801398 232801852 -49391812 + L1MC2 LINE L1 4894 5402 -744 2180 118 3 3 chr1 232801856 232802170 -49391494 - MER66B LTR ERV1 0 486 173 4437 150 73 16 chr1 232802170 232802722 -49390942 + L1MC2 LINE L1 5405 6027 -317 1684 149 48 7 chr1 232802722 232803017 -49390647 + AluJb SINE Alu 1 307 -5 4437 150 73 16 chr1 232803017 232803337 -49390327 + L1MC2 LINE L1 6027 6327 -17 2056 119 3 0 chr1 232803337 232803640 -49390024 + AluSx SINE Alu 1 304 -8 1023 242 96 85 chr1 232803655 232804300 -49389364 - L1M4 LINE L1 -1910 4236 3600 2121 123 0 0 chr1 232804300 232804601 -49389063 - AluSx SINE Alu -9 303 3 1023 242 96 85 chr1 232804601 232805272 -49388392 - L1M4 LINE L1 -2546 3600 2681 226 268 0 14 chr1 232805311 232805382 -49388282 - L1P LINE L1 -3544 2602 2533 1716 121 35 0 chr1 232805390 232805674 -49387990 + AluSx SINE Alu 16 308 0 1620 181 6 27 chr1 232805732 232806069 -49387595 - L1MC3 LINE L1 -169 7616 7287 602 175 0 10 chr1 232806070 232806167 -49387497 + AluS SINE Alu 2 97 -215 2006 125 3 0 chr1 232806245 232806532 -49387132 + AluSx SINE Alu 1 288 -24 293 253 93 0 chr1 232806541 232806616 -49387048 - L1MC3 LINE L1 -483 7302 7221 487 202 0 0 chr1 232806633 232806722 -49386942 - MLT1F1 LTR MaLR -442 125 37 928 147 41 25 chr1 232806728 232806925 -49386739 - L1MD3 LINE L1 -879 7116 6917 * 2083 205 115 21 chr1 232806909 232807581 -49386083 - L1ME2 LINE L1 -264 5900 5175 * 4145 183 47 9 chr1 232807579 232808637 -49385027 - L1MB2 LINE L1 0 6407 5307 672 229 0 67 chr1 232808663 232808851 -49384813 - L1MB2 LINE L1 -3990 2394 2230 1323 201 98 78 chr1 232808851 232809298 -49384366 - MSTB2 LTR MaLR -1 456 1 672 229 0 67 chr1 232809298 232809393 -49384271 - L1MB2 LINE L1 -4154 2230 2130 222 0 25 50 chr1 232860406 232860446 -49333218 + (CA)n Simple_repeat Simple_repeat 2 40 0 10260 42 2 3 chr1 232860619 232862355 -49331309 - L1PA6 LINE L1 -281 5873 4140 293 256 206 27 chr1 232862548 232862771 -49330893 - L2 LINE L2 -1601 1713 1451 575 275 0 35 chr1 232863018 232863189 -49330475 + MLT1J LTR MaLR 274 438 -73 198 143 0 0 chr1 232863207 232863242 -49330422 + (GGGGA)n Simple_repeat Simple_repeat 2 36 0 204 158 49 73 chr1 232863272 232863354 -49330310 + A-rich Low_complexity Low_complexity 3 82 0 351 315 0 34 chr1 232863531 232863709 -49329955 + GA-rich Low_complexity Low_complexity 2 173 0 2326 86 0 26 chr1 232864121 232864434 -49329230 - AluY SINE Alu -5 306 2 2316 79 0 3 chr1 232864470 232864762 -49328902 + AluSg SINE Alu 1 291 -19 691 276 59 10 chr1 232864799 232865002 -49328662 - MIR SINE MIR 0 262 50 709 281 83 27 chr1 232865002 232865551 -49328113 - L1ME3 LINE L1 -298 5864 5347 2352 96 0 3 chr1 232865551 232865854 -49327810 - AluY SINE Alu -9 302 1 709 281 83 27 chr1 232865854 232866475 -49327189 - L1ME3 LINE L1 -815 5347 4628 1908 127 20 14 chr1 232866477 232866769 -49326895 - AluSx SINE Alu -18 294 1 670 255 25 61 chr1 232866792 232866910 -49326754 - L1ME1 LINE L1 -7 6159 6038 2104 197 157 29 chr1 232866910 232867434 -49326230 + MLT1E LTR MaLR 3 593 0 670 255 25 61 chr1 232867434 232867593 -49326071 - L1ME1 LINE L1 -128 6038 5892 2179 61 7 0 chr1 232867600 232867878 -49325786 - L1PA8 LINE L1 -10 6162 5883 4600 47 5 0 chr1 232867603 232868161 -49325503 - L1PA8 LINE L1 -13 6159 5599 1249 177 14 0 chr1 232868161 232868460 -49325204 - L1ME LINE L1 -713 5453 5152 2052 190 27 57 chr1 232868468 232868979 -49324685 + MLT1D LTR MaLR 10 505 0 2447 93 0 0 chr1 232869172 232869474 -49324190 + AluSx SINE Alu 4 305 -7 262 266 128 68 chr1 232869502 232869638 -49324026 + L1P LINE L1 4729 4855 -1291 2246 100 41 0 chr1 232869638 232869929 -49323735 + AluSc SINE Alu 5 307 -2 2261 73 17 7 chr1 232869931 232870233 -49323431 + AluY SINE Alu 1 305 -6 262 266 128 68 chr1 232870233 232870577 -49323087 + L1P LINE L1 4855 5241 -905 1566 161 32 32 chr1 232870621 232870943 -49322721 + AluJb SINE Alu 1 322 0 1989 142 3 0 chr1 232870957 232871252 -49322412 - AluSq SINE Alu -17 296 1 21 0 0 0 chr1 232871641 232871662 -49322002 + AT_rich Low_complexity Low_complexity 1 21 0 1105 211 29 0 chr1 232872111 232872315 -49321349 + MER20 DNA MER1_type 1 210 -9 219 250 17 0 chr1 232872336 232872396 -49321268 - MIR SINE MIR -50 212 152 2026 125 31 0 chr1 232872657 232872944 -49320720 - AluSx SINE Alu -16 296 1 919 254 38 71 chr1 232873031 232873484 -49320180 + MLT1J1 LTR MaLR 1 438 -8 2298 114 0 13 chr1 232873568 232873883 -49319781 + AluSx SINE Alu 1 311 -1 260 307 55 8 chr1 232874257 232874384 -49319280 - MIR SINE MIR -41 167 35 246 353 45 26 chr1 232874755 232874911 -49318753 - MIR SINE MIR -45 217 59 422 231 261 0 chr1 232875438 232875572 -49318092 + MIR3 SINE MIR 31 199 -9 187 227 84 67 chr1 232875694 232875813 -49317851 - L2 LINE L2 -34 3279 3159 220 266 16 78 chr1 232875823 232875951 -49317713 + L2 LINE L2 2577 2696 -618 428 329 119 17 chr1 232876607 232876906 -49316758 + L1ME4a LINE L1 5497 5827 -294 2150 128 3 7 chr1 232876908 232877206 -49316458 + AluSx SINE Alu 1 297 -15 1637 180 21 0 chr1 232877251 232877535 -49316129 - MLT1B LTR MaLR -100 290 1 502 60 0 0 chr1 232877895 232877962 -49315702 - AluSx SINE Alu -6 304 238 1568 115 0 0 chr1 232877962 232878162 -49315502 - AluSx SINE Alu -112 200 1 1260 45 6 0 chr1 232879125 232879281 -49314383 + L1PA3 LINE L1 5999 6155 0 2822 231 41 47 chr1 232879281 232879887 -49313777 - L1MEc LINE L1 -3271 2944 2336 701 183 0 15 chr1 232879887 232880018 -49313646 - FLAM_A SINE Alu 0 133 5 2822 231 41 47 chr1 232880018 232880105 -49313559 - L1MEc LINE L1 -3879 2336 2250 2176 118 0 3 chr1 232880105 232880401 -49313263 + AluSx SINE Alu 1 295 -17 2822 231 41 47 chr1 232880401 232881606 -49312058 - L1MEc LINE L1 -3965 2250 852 1998 128 0 3 chr1 232881606 232881918 -49311746 - AluSx SINE Alu 0 311 1 2822 231 41 47 chr1 232881918 232881978 -49311686 - L1MEc LINE L1 -5363 852 793 354 261 255 42 chr1 232881994 232882331 -49311333 + L2 LINE L2 2807 3215 -98 4271 192 24 36 chr1 232882636 232883826 -49309838 - L1MA9 LINE L1 -33 6279 5109 772 161 8 15 chr1 232883826 232883956 -49309708 + FLAM_C SINE Alu 5 133 0 4271 192 24 36 chr1 232883956 232884324 -49309340 - L1MA9 LINE L1 -1203 5109 4738 23 54 0 0 chr1 232884337 232884374 -49309290 + AT_rich Low_complexity Low_complexity 1 37 0 1692 193 45 5 chr1 232884582 232884875 -49308789 - L1MA9 LINE L1 -1439 4707 4394 279 0 0 0 chr1 232884875 232884906 -49308758 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1692 193 45 5 chr1 232884906 232884986 -49308678 - L1MA9 LINE L1 -1752 4394 4319 2255 120 0 3 chr1 232884988 232885296 -49308368 + AluSx SINE Alu 1 307 -5 2219 103 7 0 chr1 232885935 232886226 -49307438 + AluSx SINE Alu 3 295 -17 231 331 33 47 chr1 232886798 232887161 -49306503 - L2 LINE L2 -1145 2169 1812 986 108 0 103 chr1 232887177 232887381 -49306283 + MER53 DNA DNA 2 184 -5 797 243 14 24 chr1 232889553 232889763 -49303901 + MIR SINE MIR 5 212 -50 304 239 45 60 chr1 232889864 232889998 -49303666 - MIR SINE MIR -56 152 21 477 272 159 55 chr1 232890611 232890920 -49302744 - MLT1J LTR MaLR -145 366 26 186 43 0 0 chr1 232891183 232891206 -49302458 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 195 293 133 0 chr1 232891927 232892002 -49301662 - L2 LINE L2 -20 3252 3168 259 237 0 52 chr1 232892584 232892681 -49300983 + CT-rich Low_complexity Low_complexity 1 92 0 287 288 36 58 chr1 232892697 232892836 -49300828 - L2 LINE L2 0 3272 3137 33 80 0 0 chr1 232892955 232893030 -49300634 + AT_rich Low_complexity Low_complexity 1 75 0 1367 157 0 0 chr1 232893030 232893234 -49300430 - AluJo SINE Alu -24 288 85 2014 124 16 3 chr1 232893237 232893559 -49300105 - L1MC1 LINE L1 0 6333 6008 289 287 40 0 chr1 232893560 232893661 -49300003 + MIR SINE MIR 102 206 -56 237 298 114 8 chr1 232895926 232896057 -49297607 - L2 LINE L2 0 3313 3169 182 271 21 0 chr1 232896345 232896393 -49297271 - L2 LINE L2 -257 3056 3008 2137 122 11 51 chr1 232896394 232896747 -49296917 - MER1B DNA MER1_type 0 339 1 21905 89 15 4 chr1 232896821 232899794 -49293870 + L1P LINE L1 1 3004 -3142 2079 105 0 0 chr1 232899794 232900079 -49293585 + MER9 LTR ERVK 1 285 -226 301 337 55 35 chr1 232900455 232900654 -49293010 + MIR SINE MIR 50 252 -10 342 114 0 0 chr1 232901245 232901289 -49292375 + Alu SINE Alu 1 44 -255 2336 117 0 0 chr1 232901289 232901597 -49292067 + AluSx SINE Alu 5 312 0 548 58 0 81 chr1 232901660 232901710 -49291954 - MADE1 DNA Mariner -1 79 37 2309 106 0 10 chr1 232901710 232902011 -49291653 + AluSx SINE Alu 1 298 -14 548 58 0 81 chr1 232902011 232902046 -49291618 - MADE1 DNA Mariner -43 37 1 1502 204 18 84 chr1 232902137 232902626 -49291038 - LTR37B LTR ERV1 -1 467 11 1632 167 21 3 chr1 232902737 232903019 -49290645 + AluJo SINE Alu 11 297 -15 2223 91 14 3 chr1 232903021 232903345 -49290319 + AluSg SINE Alu 1 310 0 185 297 68 0 chr1 232903931 232904005 -49289659 - L2 LINE L2 -6 3266 3188 269 316 90 0 chr1 232904304 232904437 -49289227 + MIR SINE MIR 116 260 -2 230 251 64 27 chr1 232904536 232904646 -49289018 - MIR SINE MIR -62 146 60 21 0 0 0 chr1 232904884 232904905 -49288759 + AT_rich Low_complexity Low_complexity 1 21 0 280 206 137 29 chr1 232906059 232906161 -49287503 + MIR SINE MIR 34 146 -62 27 0 0 0 chr1 232906285 232906312 -49287352 + AT_rich Low_complexity Low_complexity 1 27 0 1846 133 31 3 chr1 232906710 232907004 -49286660 - AluJb SINE Alu -10 302 1 554 274 88 33 chr1 232907692 232907907 -49285757 - MER102b DNA MER1_type -27 314 88 244 224 35 0 chr1 232908475 232908533 -49285131 + L2 LINE L2 3254 3313 0 253 252 14 101 chr1 232908958 232909097 -49284567 + MIR3 SINE MIR 1 127 -81 799 76 14 28 chr1 232909101 232909246 -49284418 + (TTCC)n Simple_repeat Simple_repeat 3 145 0 2139 73 4 0 chr1 232909351 232909626 -49284038 + L1PA5 LINE L1 5879 6154 0 186 373 30 8 chr1 232909635 232909769 -49283895 - L2 LINE L2 -323 2949 2813 253 368 8 16 chr1 232910430 232910555 -49283109 - L2 LINE L2 -555 2759 2636 784 294 143 31 chr1 232910558 232911109 -49282555 - MLT1L LTR MaLR -2 613 1 606 315 143 10 chr1 232911110 232911494 -49282170 - L2 LINE L2 -706 2608 2174 293 234 21 32 chr1 232911700 232911794 -49281870 - MIR SINE MIR -62 200 108 243 266 182 28 chr1 232912062 232912276 -49281388 - L2 LINE L2 -1601 1713 1467 554 281 0 35 chr1 232912532 232912703 -49280961 + MLT1J LTR MaLR 274 438 -73 229 220 0 33 chr1 232912721 232912812 -49280852 + G-rich Low_complexity Low_complexity 2 89 0 281 245 13 86 chr1 232912974 232913125 -49280539 + L2 LINE L2 1516 1655 -1659 1961 112 4 0 chr1 232914236 232914496 -49279168 - AluSx SINE Alu -51 261 1 30 0 0 0 chr1 232914549 232914579 -49279085 + AT_rich Low_complexity Low_complexity 1 30 0 278 169 0 77 chr1 232915049 232915114 -49278550 - L1MC4 LINE L1 -2 8040 7981 2092 231 59 48 chr1 232915115 232915757 -49277907 - L1MC4 LINE L1 -149 7893 7245 1405 164 60 0 chr1 232915798 232916096 -49277568 - MER58D DNA MER1_type 0 386 71 2332 93 3 3 chr1 232916096 232916397 -49277267 + AluSx SINE Alu 1 301 -11 1437 93 0 0 chr1 232916400 232916582 -49277082 + AluSp SINE Alu 132 313 0 2306 105 0 19 chr1 232916944 232917257 -49276407 - AluSx SINE Alu -5 307 1 2268 52 35 7 chr1 232917263 232917552 -49276112 - AluY SINE Alu -14 297 1 929 210 5 5 chr1 232917570 232917784 -49275880 + Charlie4a DNA MER1_type 189 402 -106 1590 148 23 16 chr1 232917813 232918069 -49275595 + AluJb SINE Alu 45 302 -10 2553 73 0 0 chr1 232918069 232918372 -49275292 + AluSg SINE Alu 1 303 -7 390 307 121 40 chr1 232918565 232919008 -49274656 + L2 LINE L2 2797 3272 0 423 291 188 14 chr1 232919171 232919384 -49274280 + MIR SINE MIR 1 250 -12 192 267 50 17 chr1 232919808 232919868 -49273796 + MIR SINE MIR 201 262 0 233 274 186 29 chr1 232920196 232920298 -49273366 + L3b LINE CR1 1289 1406 -177 234 247 68 27 chr1 232924858 232924931 -49268733 - MIR SINE MIR 0 262 187 2500 74 0 0 chr1 232925465 232925761 -49267903 + AluY SINE Alu 1 296 -15 477 0 0 0 chr1 232930406 232930459 -49263205 + (TG)n Simple_repeat Simple_repeat 2 54 0 678 209 0 0 chr1 232930467 232930577 -49263087 - FLAM_C SINE Alu -32 111 2 3184 189 105 15 chr1 232930613 232931490 -49262174 - L1M4 LINE L1 -1062 5084 4129 1114 280 68 20 chr1 232931489 232931989 -49261675 - L1M4 LINE L1 -2758 3388 2865 * 5299 33 2 0 chr1 232931986 232932703 -49260961 + L1P1 LINE L1 4731 5448 -707 2090 119 0 0 chr1 232934016 232934294 -49259370 + AluSx SINE Alu 2 279 -33 222 62 0 0 chr1 232934294 232934326 -49259338 + (CA)n Simple_repeat Simple_repeat 1 32 0 244 357 153 10 chr1 232934542 232934738 -49258926 + MIR SINE MIR 20 243 -19 842 58 29 0 chr1 232935001 232935104 -49258560 + U6 snRNA snRNA 2 107 0 236 291 38 0 chr1 232935298 232935377 -49258287 - MIR3 SINE MIR -22 186 105 503 187 14 22 chr1 232935860 232935999 -49257665 + CT-rich Low_complexity Low_complexity 2 139 0 1925 163 7 0 chr1 232935999 232936293 -49257371 - AluJb SINE Alu -16 296 1 375 265 88 7 chr1 232936293 232936429 -49257235 - MIR SINE MIR -79 183 37 390 318 41 29 chr1 232938461 232938619 -49255045 - MIR3 SINE MIR -54 154 30 543 253 86 17 chr1 232940632 232940806 -49252858 + MIR SINE MIR 77 262 0 189 107 0 0 chr1 232941687 232941715 -49251949 + (A)n Simple_repeat Simple_repeat 1 28 0 607 234 188 23 chr1 232942327 232942545 -49251119 + MIR SINE MIR 9 262 0 220 283 42 75 chr1 232943266 232943444 -49250220 + MIR SINE MIR 35 212 -50 2599 52 3 0 chr1 232943475 232943781 -49249883 + AluY SINE Alu 2 308 -3 618 161 0 12 chr1 232944580 232944801 -49248863 + AluJo SINE Alu 1 296 -16 2435 82 3 3 chr1 232944955 232945260 -49248404 - AluSc SINE Alu -4 305 1 790 283 89 36 chr1 232945360 232945595 -49248069 + L1ME3A LINE L1 5414 5635 -535 1144 159 9 65 chr1 232945595 232945827 -49247837 + MER20 DNA MER1_type 1 219 0 790 283 89 36 chr1 232945827 232946096 -49247568 + L1ME3A LINE L1 5635 5945 -225 2070 116 10 3 chr1 232946369 232946662 -49247002 - AluSg SINE Alu -15 295 1 857 142 0 15 chr1 232946731 232946897 -49246767 + FLAM_C SINE Alu 2 165 0 389 164 118 64 chr1 232947165 232947275 -49246389 + MLT1C LTR MaLR 10 125 -342 1005 159 69 133 chr1 232947312 232947384 -49246280 + MLT1C LTR MaLR 95 170 -297 2367 97 3 0 chr1 232947384 232947682 -49245982 - AluSq SINE Alu -14 299 1 1005 159 69 133 chr1 232947682 232947980 -49245684 + MLT1C LTR MaLR 170 464 -3 1739 197 3 10 chr1 232948177 232948476 -49245188 + AluJo SINE Alu 1 297 -15 829 261 112 71 chr1 232948532 232949050 -49244614 + LTR67 LTR ERVL 19 557 0 1659 96 0 26 chr1 232949143 232949373 -49244291 + AluY SINE Alu 1 224 -87 609 170 54 27 chr1 232951109 232951256 -49242408 + Charlie4 DNA MER1_type 50 200 -1761 333 217 33 0 chr1 232951252 232951344 -49242320 - AluSp/q SINE Alu 0 303 209 * 362 150 0 0 chr1 232951614 232951674 -49241990 + (GGGAA)n Simple_repeat Simple_repeat 2 61 0 337 266 177 8 chr1 232951984 232952108 -49241556 + MIR3 SINE MIR 9 153 -55 325 308 94 8 chr1 232953087 232953204 -49240460 - L2 LINE L2 -13 3259 3133 2358 83 10 0 chr1 232953950 232954250 -49239414 + AluSp SINE Alu 1 303 -10 818 145 0 0 chr1 232954347 232954464 -49239200 + AluJo SINE Alu 1 117 -195 204 40 0 0 chr1 232954467 232954492 -49239172 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 599 268 117 19 chr1 232954513 232954778 -49238886 - MLT1J LTR MaLR 0 511 221 1186 147 0 6 chr1 232954837 232955014 -49238650 + AluJo SINE Alu 120 295 -17 254 206 94 100 chr1 232955018 232955188 -49238476 - MLT1J LTR MaLR -340 171 3 399 248 85 35 chr1 232955190 232955331 -49238333 - L2 LINE L2 -258 3014 2867 274 260 39 94 chr1 232956117 232956244 -49237420 + MER5A DNA MER1_type 47 166 -23 * 332 303 37 9 chr1 232956142 232956251 -49237413 - MER5A DNA MER1_type -50 139 28 422 204 102 0 chr1 232956298 232956386 -49237278 + MIR SINE MIR 48 144 -64 3315 102 20 2 chr1 232957104 232957554 -49236110 - LTR22A LTR ERVK 0 458 1 791 105 0 0 chr1 232957554 232957668 -49235996 - HERVK22 LTR ERVK 0 6837 6724 * 6489 143 31 13 chr1 232957665 232959394 -49234270 - HERVK22 LTR ERVK -1732 5105 1 3199 81 60 0 chr1 232959394 232959824 -49233840 - LTR22A LTR ERVK 0 458 3 2024 113 3 11 chr1 232959840 232960157 -49233507 + AluSg SINE Alu 1 315 0 214 276 112 105 chr1 232960217 232960369 -49233295 - L3 LINE CR1 -60 1517 1365 513 271 59 54 chr1 232960370 232960591 -49233073 - MIR SINE MIR -2 260 39 967 152 14 60 chr1 232960608 232960825 -49232839 - MER20 DNA MER1_type -1 218 12 526 231 88 85 chr1 232960852 232960956 -49232708 - L3 LINE CR1 -200 1377 1275 1856 154 27 24 chr1 232960956 232961249 -49232415 + AluJo SINE Alu 1 294 -18 526 231 88 85 chr1 232961249 232961404 -49232260 - L3 LINE CR1 -302 1275 1117 342 340 94 45 chr1 232961477 232961721 -49231943 + L2 LINE L2 3014 3269 -3 2236 95 0 36 chr1 232961816 232962122 -49231542 - AluSg SINE Alu -4 306 12 220 322 8 59 chr1 232962699 232962817 -49230847 - L2 LINE L2 -42 3230 3119 523 320 29 0 chr1 232963552 232963724 -49229940 + L3 LINE CR1 744 920 -657 664 208 18 60 chr1 232963784 232963952 -49229712 - MIR SINE MIR -56 206 46 250 297 60 115 chr1 232963967 232964149 -49229515 + L3 LINE CR1 997 1168 -409 191 253 40 50 chr1 232964171 232964270 -49229394 + L2 LINE L2 2417 2514 -800 858 303 147 23 chr1 232964338 232965036 -49228628 + L2 LINE L2 2521 3312 -1 604 221 215 46 chr1 232965158 232965215 -49228449 - MIR SINE MIR -21 241 195 2167 123 0 0 chr1 232965215 232965544 -49228120 + AluSx SINE Alu 1 329 0 604 221 215 46 chr1 232965544 232965680 -49227984 - MIR SINE MIR -67 195 14 7205 58 1 0 chr1 232966207 232967925 -49225739 + L1PA5 LINE L1 4462 6186 0 245 296 146 79 chr1 232968621 232968888 -49224776 + L3b LINE CR1 1296 1580 -3 495 346 87 9 chr1 232968945 232969176 -49224488 - MIR SINE MIR -6 256 8 416 188 40 20 chr1 232969304 232969405 -49224259 + MIR3 SINE MIR 85 187 -21 255 300 11 11 chr1 232970556 232970646 -49223018 + L2 LINE L2 2969 3058 -214 301 213 0 0 chr1 232970653 232970714 -49222950 - L2 LINE L2 0 3272 3212 219 298 48 48 chr1 232972415 232972519 -49221145 - MIR SINE MIR -93 115 12 276 238 0 0 chr1 232972728 232972812 -49220852 + CT-rich Low_complexity Low_complexity 3 86 0 240 324 88 0 chr1 232972814 232972916 -49220748 - L2 LINE L2 -15 3257 3147 1548 239 35 27 chr1 232974195 232974685 -49218979 - MLT1F LTR MaLR -17 525 1 209 195 24 0 chr1 232975214 232975255 -49218409 + MIR SINE MIR 27 68 -140 2358 181 78 0 chr1 232975298 232975746 -49217918 + MLT1D LTR MaLR 20 502 -3 2171 226 92 4 chr1 232975827 232976337 -49217327 + MLT1H1 LTR MaLR 1 555 0 1263 213 95 32 chr1 232976548 232976886 -49216778 + MLT1A2 LTR MaLR 1 359 -15 669 277 47 23 chr1 232977829 232978085 -49215579 + MIR SINE MIR 1 262 0 2061 151 0 25 chr1 232978101 232978418 -49215246 + AluJb SINE Alu 1 309 -3 202 229 0 0 chr1 232979620 232979668 -49213996 + A-rich Low_complexity Low_complexity 1 48 0 535 245 25 105 chr1 232981155 232981348 -49212316 + L2 LINE L2 2148 2312 -1002 2203 112 3 7 chr1 232981348 232981642 -49212022 + AluSq SINE Alu 1 293 -20 535 245 25 105 chr1 232981642 232981734 -49211930 + L2 LINE L2 2312 2410 -904 187 231 58 0 chr1 232982101 232982153 -49211511 + L2 LINE L2 3020 3074 -198 217 250 16 31 chr1 232982234 232982298 -49211366 + MER5A DNA MER1_type 62 124 -65 201 310 69 26 chr1 232982348 232982464 -49211200 + L2 LINE L2 3160 3280 -33 365 230 62 18 chr1 232982484 232982597 -49211067 - MIR SINE MIR -21 241 124 680 279 177 14 chr1 232982727 232983132 -49210532 + MLT1J LTR MaLR 1 511 0 2027 121 41 0 chr1 232984194 232984484 -49209180 - AluSx SINE Alu -10 302 1 1022 236 0 0 chr1 232984575 232984787 -49208877 + MIR SINE MIR 31 242 -20 351 238 66 49 chr1 232984820 232984865 -49208799 - MIR SINE MIR -70 192 149 2336 79 17 0 chr1 232984865 232985155 -49208509 + AluSg SINE Alu 1 295 -15 351 238 66 49 chr1 232985155 232985231 -49208433 - MIR SINE MIR -113 149 69 228 197 155 0 chr1 232985968 232986039 -49207625 - MIR SINE MIR -70 192 111 775 244 31 27 chr1 232986168 232986393 -49207271 - Charlie8 DNA MER1_type -2183 234 9 1291 259 156 36 chr1 232986498 232986823 -49206841 - L2 LINE L2 -11 3302 3018 498 73 0 37 chr1 232986823 232986905 -49206759 + MADE1 DNA Mariner 2 80 0 1291 259 156 36 chr1 232986905 232987257 -49206407 - L2 LINE L2 -295 3018 2710 669 237 116 11 chr1 232987257 232987447 -49206217 + MER63A DNA MER1_type 1 210 0 1291 259 156 36 chr1 232987447 232987642 -49206022 - L2 LINE L2 -603 2710 2312 429 262 41 86 chr1 232987700 232987967 -49205697 - L1MEd LINE L1 -4446 1683 1429 2244 96 4 0 chr1 232987969 232988281 -49205383 + AluSp SINE Alu 1 313 0 631 269 110 51 chr1 232988305 232989008 -49204656 - L1MEd LINE L1 -4862 1257 614 1956 161 13 3 chr1 232989252 232989612 -49204052 - AluSx SINE Alu 0 368 6 23 0 0 0 chr1 232989808 232989831 -49203833 + AT_rich Low_complexity Low_complexity 1 23 0 1517 143 53 13 chr1 232989930 232990086 -49203578 + L1MA8 LINE L1 5326 5474 -817 318 26 0 0 chr1 232990086 232990125 -49203539 + (CA)n Simple_repeat Simple_repeat 2 40 0 1517 143 53 13 chr1 232990125 232990305 -49203359 + L1MA8 LINE L1 5474 5671 -620 3257 184 26 10 chr1 232990338 232990815 -49202849 - Tigger7 DNA MER2_type -1898 589 100 2346 81 7 0 chr1 232990815 232991111 -49202553 + AluSg SINE Alu 1 298 -12 3257 184 26 10 chr1 232991111 232991213 -49202451 - Tigger7 DNA MER2_type -2387 100 1 3137 158 14 14 chr1 232991213 232991800 -49201864 + L1MA8 LINE L1 5669 6255 -36 298 167 38 159 chr1 232991878 232992010 -49201654 + L1ME2 LINE L1 6048 6163 -1 268 239 258 45 chr1 232992724 232992879 -49200785 + MIR SINE MIR 75 262 0 2156 128 3 7 chr1 232993031 232993329 -49200335 + AluSg SINE Alu 1 297 -13 673 244 26 57 chr1 232993348 232993577 -49200087 + L2 LINE L2 3089 3310 -3 364 318 26 13 chr1 232994254 232994408 -49199256 + GA-rich Low_complexity Low_complexity 1 156 0 275 275 44 22 chr1 232994807 232994898 -49198766 + L3b LINE CR1 1296 1388 -195 789 228 65 47 chr1 232996820 232997052 -49196612 + MIR SINE MIR 23 258 -4 358 355 51 27 chr1 232997089 232997345 -49196319 - L2 LINE L2 -93 3179 2918 2306 115 0 0 chr1 232997357 232997661 -49196003 + AluSx SINE Alu 1 304 -8 249 375 24 32 chr1 232997710 232997958 -49195706 - L2 LINE L2 -466 2848 2603 2298 112 0 0 chr1 232998307 232998602 -49195062 - AluSg SINE Alu 0 310 16 478 222 56 0 chr1 232999380 232999506 -49194158 + MIR SINE MIR 41 173 -89 1829 67 5 5 chr1 233001135 233001358 -49192306 + AluY SINE Alu 83 305 -6 2231 97 7 19 chr1 233001369 233001679 -49191985 + AluSq SINE Alu 1 306 -7 234 276 51 41 chr1 233002060 233002158 -49191506 - L2 LINE L2 -4 3268 3170 300 322 59 8 chr1 233003012 233003130 -49190534 - MIR3 SINE MIR -72 136 13 429 262 27 20 chr1 233003134 233003283 -49190381 - MIR3 SINE MIR -26 182 33 395 194 42 73 chr1 233003359 233003524 -49190140 + L1MC5 LINE L1 7766 7925 -36 1701 198 3 0 chr1 233003892 233004185 -49189479 - AluJo SINE Alu -18 294 1 462 271 81 19 chr1 233004519 233004691 -49188973 - MIR SINE MIR -50 212 20 2245 97 0 7 chr1 233004818 233005135 -49188529 - AluSq SINE Alu 0 315 1 324 79 16 32 chr1 233005914 233005977 -49187687 + (TCCC)n Simple_repeat Simple_repeat 4 65 0 364 256 179 8 chr1 233007381 233007498 -49186166 + MER5A DNA MER1_type 50 186 -3 322 192 103 0 chr1 233008365 233008443 -49185221 - MIR SINE MIR -53 209 124 265 202 163 8 chr1 233008869 233008965 -49184699 - MIR SINE MIR -110 152 38 2060 153 0 3 chr1 233009681 233009989 -49183675 + AluJb SINE Alu 5 311 -1 848 148 0 67 chr1 233010210 233010359 -49183305 + FLAM_C SINE Alu 1 139 -4 23 0 0 0 chr1 233011484 233011507 -49182157 + AT_rich Low_complexity Low_complexity 1 23 0 189 147 0 0 chr1 233011896 233011930 -49181734 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 207 291 51 13 chr1 233012399 233012478 -49181186 - MIR SINE MIR -78 184 103 2231 103 3 7 chr1 233012526 233012826 -49180838 - AluSq SINE Alu -5 308 10 2653 62 3 0 chr1 233012847 233013154 -49180510 - AluY SINE Alu -3 308 1 575 303 61 15 chr1 233014511 233014709 -49178955 + MIR SINE MIR 20 226 -36 233 229 0 0 chr1 233016392 233016440 -49177224 + MIR3 SINE MIR 161 208 0 228 229 34 90 chr1 233016759 233016861 -49176803 - MIR3 SINE MIR -48 160 65 234 171 24 134 chr1 233018448 233018494 -49175170 + MIR3 SINE MIR 120 155 -53 2331 69 3 16 chr1 233018494 233018797 -49174867 + AluSx SINE Alu 1 299 -13 234 171 24 134 chr1 233018797 233018832 -49174832 + MIR3 SINE MIR 155 192 -16 2262 129 0 0 chr1 233019935 233020246 -49173418 + AluSx SINE Alu 1 311 -1 787 139 0 29 chr1 233020388 233020525 -49173139 - FLAM_C SINE Alu 0 133 1 192 371 35 35 chr1 233020684 233020827 -49172837 - L2 LINE L2 -5 3267 3125 2489 95 103 7 chr1 233021239 233021648 -49172016 + LTR7 LTR ERV1 1 448 -2 220 342 53 80 chr1 233021672 233021897 -49171767 - L2 LINE L2 -189 3083 2865 505 229 137 0 chr1 233022981 233023112 -49170552 + MIR3 SINE MIR 35 183 -25 1189 203 67 30 chr1 233023306 233023636 -49170028 - MER2 DNA MER2_type -2 342 1 1021 188 11 0 chr1 233024759 233024935 -49168729 + AluJb SINE Alu 134 311 -1 324 305 67 30 chr1 233025298 233025462 -49168202 + L2 LINE L2 3103 3272 0 2348 97 10 0 chr1 233025498 233025797 -49167867 + AluSq SINE Alu 3 304 -9 363 276 43 32 chr1 233026925 233027110 -49166554 + MIR3 SINE MIR 15 201 -7 341 256 23 0 chr1 233028388 233028474 -49165190 - MLT1K LTR MaLR -481 107 20 296 216 68 0 chr1 233028474 233028548 -49165116 - L3 LINE CR1 -231 1346 1268 255 186 0 0 chr1 233029503 233029546 -49164118 + MIR SINE MIR 37 79 -129 182 196 78 0 chr1 233029754 233029805 -49163859 - L3b LINE CR1 -252 1331 1277 581 116 0 53 chr1 233030153 233030342 -49163322 + (CCA)n Simple_repeat Simple_repeat 2 180 0 226 49 24 24 chr1 233030360 233030401 -49163263 + (CCA)n Simple_repeat Simple_repeat 2 42 0 2105 120 13 45 chr1 233030691 233031067 -49162597 + LTR1 LTR ERV1 422 785 0 18258 52 1 2 chr1 233031159 233033508 -49160156 - L1P LINE L1 -795 5351 3004 3818 84 0 4 chr1 233033508 233034021 -49159643 - MER9 LTR ERVK 0 511 1 18258 52 1 2 chr1 233034021 233034069 -49159595 - L1P LINE L1 -3142 3004 2957 671 159 0 0 chr1 233034170 233034277 -49159387 - AluSq/x SINE Alu -204 108 2 780 274 192 12 chr1 233034345 233034772 -49158892 - L2 LINE L2 -596 2718 2215 192 343 14 14 chr1 233035728 233035801 -49157863 - MIR SINE MIR -170 92 20 259 250 73 29 chr1 233035989 233036057 -49157607 - L2 LINE L2 -1 3312 3242 196 235 0 20 chr1 233036881 233036932 -49156732 + L2 LINE L2 3219 3268 -4 653 242 32 47 chr1 233038214 233038404 -49155260 - MIR SINE MIR -71 191 5 570 303 38 29 chr1 233038425 233038663 -49155001 + MIR SINE MIR 20 259 -3 190 341 30 15 chr1 233038654 233038786 -49154878 + L2 LINE L2 3179 3312 -1 * 2309 124 8 39 chr1 233039003 233039390 -49154274 - THE1C LTR MaLR 0 375 1 278 279 25 0 chr1 233039918 233039997 -49153667 + MIR SINE MIR 100 180 -82 1282 146 0 0 chr1 233040303 233040481 -49153183 - AluJb SINE Alu -1 311 134 465 303 97 0 chr1 233040491 233040646 -49153018 + MER5B DNA MER1_type 2 171 -7 2254 95 0 3 chr1 233041758 233042065 -49151599 - AluSc SINE Alu 0 306 1 1012 194 6 0 chr1 233043183 233043363 -49150301 + AluJb SINE Alu 132 312 0 324 196 206 50 chr1 233043392 233043611 -49150053 + LTR33 LTR ERVL 34 286 -235 336 293 189 26 chr1 233043845 233044036 -49149628 + MIR SINE MIR 40 261 -1 245 319 104 35 chr1 233044784 233044928 -49148736 - MIR SINE MIR -28 234 81 434 297 78 21 chr1 233046466 233046658 -49147006 + MIR SINE MIR 45 247 -15 834 252 49 9 chr1 233047666 233047892 -49145772 - MIR SINE MIR -24 238 4 189 184 26 0 chr1 233047911 233047949 -49145715 + L2 LINE L2 3268 3306 -7 2424 87 0 3 chr1 233048414 233048723 -49144941 + AluY SINE Alu 1 308 -3 424 158 0 0 chr1 233048739 233048816 -49144848 - L1MB3 LINE L1 -191 5992 5916 495 320 19 63 chr1 233048820 233049136 -49144528 - L1MB3 LINE L1 -332 5789 5488 269 278 0 0 chr1 233049490 233049562 -49144102 - MIR SINE MIR -119 143 72 267 306 16 41 chr1 233049585 233049706 -49143958 - MIR SINE MIR -13 249 132 227 280 103 74 chr1 233049842 233050181 -49143483 + L2 LINE L2 2921 3269 -3 713 195 13 19 chr1 233050787 233050946 -49142718 + AluSg/x SINE Alu 148 305 -7 287 268 31 10 chr1 233052156 233052253 -49141411 + CT-rich Low_complexity Low_complexity 1 99 0 2282 180 110 11 chr1 233053845 233054373 -49139291 - L1MB5 LINE L1 -8 6166 5587 215 222 49 62 chr1 233054426 233054507 -49139157 + MIR SINE MIR 183 262 0 213 317 89 10 chr1 233054509 233054610 -49139054 - MIR SINE MIR -72 136 28 243 0 0 0 chr1 233054648 233054675 -49138989 + (T)n Simple_repeat Simple_repeat 1 27 0 195 306 105 32 chr1 233055112 233055236 -49138428 - MIR3 SINE MIR -61 147 15 349 266 90 32 chr1 233055868 233056056 -49137608 + L1ME3A LINE L1 5971 6169 -1 353 310 8 31 chr1 233056056 233056185 -49137479 + MIR SINE MIR 20 145 -63 941 200 0 0 chr1 233056212 233056372 -49137292 + FRAM SINE Alu 6 165 -11 1564 225 94 14 chr1 233056514 233056941 -49136723 - MLT1C LTR MaLR -1 466 6 207 337 79 0 chr1 233057094 233057183 -49136481 - MIR SINE MIR -94 168 73 301 142 94 7 chr1 233058249 233058356 -49135308 - MER5A DNA MER1_type -4 185 1 344 264 72 16 chr1 233058365 233058490 -49135174 + MER5A DNA MER1_type 58 189 0 450 284 0 32 chr1 233059049 233059204 -49134460 + MER117 DNA MER1_type 1 150 -47 315 346 47 16 chr1 233060612 233060739 -49132925 + L2 LINE L2 3127 3257 -15 250 189 189 27 chr1 233060748 233060822 -49132842 - L2 LINE L2 0 3272 3187 887 271 62 4 chr1 233061274 233061514 -49132150 + MIR SINE MIR 1 254 -8 346 315 62 43 chr1 233061622 233061784 -49131880 - MER5A DNA MER1_type 0 189 14 1800 122 0 8 chr1 233062495 233062741 -49130923 + AluSg SINE Alu 1 244 -66 970 79 0 31 chr1 233062741 233062868 -49130796 + AluSg/x SINE Alu 176 298 -14 2179 87 0 4 chr1 233062884 233063150 -49130514 + AluSx SINE Alu 37 301 -11 641 281 67 21 chr1 233063532 233063822 -49129842 + MLT1J2 LTR MaLR 39 376 -74 1164 79 17 6 chr1 233063828 233064006 -49129658 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 818 123 0 0 chr1 233064023 233064129 -49129535 - FLAM_C SINE Alu -37 106 1 14892 107 40 4 chr1 233065360 233066561 -49127103 - Tigger1 DNA MER2_type -1 2417 1260 1669 189 0 21 chr1 233066561 233066846 -49126818 - AluJo SINE Alu -33 279 1 14892 107 40 4 chr1 233066846 233067918 -49125746 - Tigger1 DNA MER2_type -1158 1260 63 382 163 17 67 chr1 233068268 233068503 -49125161 + (TGGG)n Simple_repeat Simple_repeat 1 223 0 21 0 0 0 chr1 233068689 233068710 -49124954 + GC_rich Low_complexity Low_complexity 1 21 0 180 105 40 65 chr1 233068743 233068867 -49124797 + (TGGG)n Simple_repeat Simple_repeat 1 121 0 295 188 0 44 chr1 233068922 233069103 -49124561 + (CCA)n Simple_repeat Simple_repeat 2 174 0 866 178 7 0 chr1 233069234 233069380 -49124284 - MER46A DNA MER2_type -89 147 1 2217 110 3 7 chr1 233069666 233069967 -49123697 - AluSx SINE Alu -12 300 1 189 74 0 0 chr1 233070100 233070127 -49123537 + (TC)n Simple_repeat Simple_repeat 1 27 0 444 263 69 38 chr1 233070573 233070733 -49122931 + MIR SINE MIR 98 262 0 186 292 167 0 chr1 233070933 233071029 -49122635 + L3b LINE CR1 1345 1456 -127 312 310 0 57 chr1 233071789 233071947 -49121717 + CT-rich Low_complexity Low_complexity 1 149 0 189 171 0 0 chr1 233072431 233072466 -49121198 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 170 21 0 chr1 233072628 233072675 -49120989 + GA-rich Low_complexity Low_complexity 2 49 0 2252 183 21 0 chr1 233072677 233073104 -49120560 - MER63B DNA MER1_type 0 436 1 271 335 98 20 chr1 233073823 233074068 -49119596 - L2 LINE L2 -62 3251 2988 249 312 25 64 chr1 233074194 233074351 -49119313 - MIR SINE MIR -74 188 38 200 131 0 66 chr1 233074569 233074604 -49119060 + (TC)n Simple_repeat Simple_repeat 2 33 -25 180 0 0 0 chr1 233074604 233074624 -49119040 + (TG)n Simple_repeat Simple_repeat 2 21 0 200 131 0 66 chr1 233074624 233074649 -49119015 + (TC)n Simple_repeat Simple_repeat 33 58 0 2342 106 3 3 chr1 233074793 233075104 -49118560 - AluSp SINE Alu -2 311 1 444 251 71 52 chr1 233075291 233075502 -49118162 - MIR SINE MIR -34 228 14 189 213 0 0 chr1 233075734 233075781 -49117883 + GA-rich Low_complexity Low_complexity 2 48 0 293 243 126 18 chr1 233076628 233076739 -49116925 - MIR SINE MIR -50 212 90 231 254 0 14 chr1 233077185 233077256 -49116408 + C-rich Low_complexity Low_complexity 2 71 0 595 244 8 0 chr1 233077768 233077895 -49115769 - FLAM_A SINE Alu -1 132 5 2339 101 10 0 chr1 233078634 233078941 -49114723 + AluSg SINE Alu 1 310 0 341 220 131 62 chr1 233079620 233079698 -49113966 - MIR SINE MIR -53 209 138 2197 91 0 0 chr1 233079698 233079974 -49113690 + AluSx SINE Alu 36 311 -1 341 220 131 62 chr1 233079974 233080074 -49113590 - MIR SINE MIR -124 138 18 551 296 81 27 chr1 233081147 233081518 -49112146 - L2 LINE L2 -51 3262 2872 226 320 82 20 chr1 233082116 233082263 -49111401 + MIR3 SINE MIR 31 186 -22 259 309 11 11 chr1 233082907 233083001 -49110663 + CT-rich Low_complexity Low_complexity 2 95 0 2408 97 0 3 chr1 233083446 233083755 -49109909 + AluSx SINE Alu 1 308 -4 1108 129 0 0 chr1 233086841 233086988 -49106676 - AluSg SINE Alu -163 147 1 247 224 17 0 chr1 233087695 233087753 -49105911 + (CA)n Simple_repeat Simple_repeat 1 59 0 474 293 0 24 chr1 233088148 233088271 -49105393 + L3 LINE CR1 1428 1547 -30 1943 183 0 0 chr1 233088498 233088799 -49104865 + AluJb SINE Alu 1 301 -11 238 250 198 0 chr1 233089101 233089197 -49104467 + MER91A DNA MER1_type 29 143 -53 1077 69 19 0 chr1 233089200 233089359 -49104305 - L1PA12 LINE L1 -128 6040 5879 232 326 90 14 chr1 233089457 233089601 -49104063 + L2 LINE L2 2692 2846 -468 379 69 0 0 chr1 233089611 233089669 -49103995 - AluSp/q SINE Alu -1 302 245 198 282 24 12 chr1 233090946 233091031 -49102633 - MIR3 SINE MIR -122 86 1 1905 155 0 39 chr1 233091408 233091718 -49101946 + AluJb SINE Alu 1 298 -14 1669 155 3 48 chr1 233091735 233092025 -49101639 + AluJb SINE Alu 1 277 -35 2303 101 3 3 chr1 233092479 233092776 -49100888 + AluSq SINE Alu 1 297 -16 657 202 8 0 chr1 233093439 233093568 -49100096 + FLAM_A SINE Alu 1 130 -3 833 108 0 0 chr1 233093767 233093878 -49099786 - FLAM_C SINE Alu -32 111 1 454 294 43 25 chr1 233094094 233094257 -49099407 + MER5A DNA MER1_type 23 188 -1 850 160 53 30 chr1 233094580 233094749 -49098915 + AluJb SINE Alu 136 308 -4 456 254 79 36 chr1 233094770 233094935 -49098729 + MIR SINE MIR 20 191 -71 2127 97 35 3 chr1 233094935 233095223 -49098441 + AluSx SINE Alu 1 297 -15 2333 86 0 23 chr1 233096287 233096591 -49097073 - AluSq SINE Alu -4 309 13 386 206 12 12 chr1 233096830 233096939 -49096725 - AluSp SINE Alu -171 132 71 1407 171 60 16 chr1 233096989 233097172 -49096492 + L1M2 LINE L1 5308 5482 -672 318 26 0 0 chr1 233097172 233097211 -49096453 + (CA)n Simple_repeat Simple_repeat 2 40 0 1407 171 60 16 chr1 233097211 233097392 -49096272 + L1M2 LINE L1 5482 5672 -482 2521 206 34 0 chr1 233097424 233097900 -49095764 - Tigger7 DNA MER2_type -145 588 97 2176 82 4 0 chr1 233097900 233098169 -49095495 + AluSg SINE Alu 2 271 -39 197 178 22 0 chr1 233098170 233098215 -49095449 + GA-rich Low_complexity Low_complexity 1 46 0 993 254 10 91 chr1 233098336 233098829 -49094835 + LTR37B LTR ERV1 13 465 -3 438 253 253 0 chr1 233149241 233149395 -49044269 + MIR SINE MIR 20 212 -50 260 239 57 79 chr1 233149474 233149619 -49044045 + MIR SINE MIR 12 160 -48 523 249 151 25 chr1 233150237 233150398 -49043266 + MIR SINE MIR 16 211 -51 1899 140 58 41 chr1 233150398 233150478 -49043186 + MER7A DNA MER2_type 1 78 -2960 1706 111 0 0 chr1 233150478 233150731 -49042933 + AluSq SINE Alu 70 322 0 1899 140 58 41 chr1 233150731 233150991 -49042673 + MER7A DNA MER2_type 78 346 0 523 249 151 25 chr1 233150991 233151047 -49042617 + MIR SINE MIR 211 259 -3 2378 86 0 0 chr1 233151387 233151678 -49041986 + AluSc SINE Alu 1 291 -18 627 165 0 0 chr1 233151691 233151782 -49041882 + AluSq SINE Alu 131 221 -92 233 274 88 44 chr1 233152121 233152234 -49041430 + MIR SINE MIR 109 226 -36 246 274 0 0 chr1 233152302 233152353 -49041311 + L2 LINE L2 3251 3301 -12 2168 121 10 0 chr1 233152491 233152788 -49040876 - AluSx SINE Alu -12 300 1 1860 171 0 26 chr1 233153417 233153727 -49039937 - AluJb SINE Alu -9 303 2 244 304 88 0 chr1 233153834 233153936 -49039728 + MIR SINE MIR 70 180 -82 2339 108 3 0 chr1 233154423 233154729 -49038935 + AluSc SINE Alu 2 308 -1 1262 129 0 0 chr1 233154730 233154900 -49038764 + AluSg/x SINE Alu 131 300 -10 2562 50 3 0 chr1 233155148 233155447 -49038217 + AluY SINE Alu 1 300 -11 202 240 0 20 chr1 233155636 233155686 -49037978 - L2 LINE L2 -90 3223 3175 24 0 0 0 chr1 233157086 233157110 -49036554 + AT_rich Low_complexity Low_complexity 1 24 0 1459 187 21 55 chr1 233157162 233157451 -49036213 - AluJo SINE Alu -33 279 1 1892 73 57 0 chr1 233158629 233158874 -49034790 + AluSp SINE Alu 1 259 -54 1899 165 0 22 chr1 233159587 233159903 -49033761 + AluJb SINE Alu 1 309 -3 1354 144 174 4 chr1 233159913 233160194 -49033470 + AluSx SINE Alu 9 329 0 358 181 32 0 chr1 233160869 233160963 -49032701 + T-rich Low_complexity Low_complexity 2 98 0 605 146 0 0 chr1 233161097 233161193 -49032471 + FLAM_A SINE Alu 47 142 0 2335 108 0 9 chr1 233161194 233161510 -49032154 + AluSq SINE Alu 1 313 0 407 286 154 11 chr1 233162330 233162512 -49031152 - MIR SINE MIR -6 256 49 2070 111 42 20 chr1 233163039 233163345 -49030319 + AluSq SINE Alu 1 313 0 803 148 0 63 chr1 233163490 233163523 -49030141 - FLAM_C SINE Alu -169 143 109 2072 121 3 38 chr1 233163523 233163836 -49029828 + AluSx SINE Alu 1 302 -10 803 148 0 63 chr1 233163836 233163944 -49029720 - FLAM_C SINE Alu -203 109 11 241 203 34 0 chr1 233164194 233164211 -49029453 + A-rich Low_complexity Low_complexity 3 18 -45 1891 168 3 19 chr1 233164211 233164527 -49029137 + AluJb SINE Alu 1 311 -1 241 203 34 0 chr1 233164527 233164568 -49029096 + A-rich Low_complexity Low_complexity 18 63 0 542 264 163 0 chr1 233167237 233167415 -49026249 - MIR SINE MIR -36 226 20 268 265 169 0 chr1 233167486 233167569 -49026095 + MIR SINE MIR 3 99 -163 2230 102 7 3 chr1 233167569 233167864 -49025800 - AluSq SINE Alu -17 296 1 2603 57 0 0 chr1 233167873 233168171 -49025493 - AluSx SINE Alu -6 306 9 805 175 92 19 chr1 233168172 233168378 -49025286 + Tigger1 DNA MER2_type 2198 2418 0 1433 204 3 29 chr1 233168416 233168730 -49024934 + AluJo SINE Alu 1 306 -6 309 359 47 8 chr1 233169201 233169329 -49024335 + MER91A DNA MER1_type 1 133 -63 2315 75 41 0 chr1 233169357 233169651 -49024013 + AluY SINE Alu 1 306 -5 271 228 13 25 chr1 233169921 233170000 -49023664 + MIR SINE MIR 109 186 -76 211 296 59 82 chr1 233170381 233170516 -49023148 - MIR SINE MIR -72 190 59 1903 154 10 0 chr1 233170569 233170861 -49022803 + AluJo SINE Alu 1 295 -17 2033 141 0 3 chr1 233171345 233171649 -49022015 - AluSx SINE Alu -9 303 1 445 188 125 0 chr1 233171673 233171769 -49021895 - MLT1C LTR MaLR -359 108 1 248 268 36 71 chr1 233172058 233172170 -49021494 - L3b LINE CR1 -206 1377 1270 251 118 0 0 chr1 233173033 233173087 -49020577 - Alu SINE Alu 0 301 248 2066 140 13 0 chr1 233173567 233173874 -49019790 + AluSx SINE Alu 1 311 -1 246 282 204 0 chr1 233173938 233174041 -49019623 - L1M1 LINE L1 -484 5818 5695 2328 107 0 0 chr1 233174535 233174845 -49018819 + AluSx SINE Alu 1 310 -2 331 241 152 27 chr1 233174849 233174961 -49018703 + MIR SINE MIR 28 153 -55 1773 174 11 11 chr1 233175533 233175820 -49017844 + AluJo SINE Alu 1 287 -25 447 19 0 0 chr1 233175820 233175872 -49017792 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 2324 138 5 21 chr1 233175878 233176256 -49017408 + THE1C LTR MaLR 3 374 -1 2199 101 4 0 chr1 233176974 233177252 -49016412 + AluSq SINE Alu 1 279 -34 2501 74 3 0 chr1 233177252 233177551 -49016113 + AluSp SINE Alu 1 300 -13 241 154 39 0 chr1 233177587 233177639 -49016025 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 247 248 65 118 chr1 233177742 233177895 -49015769 + L2 LINE L2 3128 3272 0 387 282 0 99 chr1 233178581 233178723 -49014941 - L2 LINE L2 -6 3266 3139 1329 197 113 7 chr1 233178755 233179029 -49014635 + AluJo SINE Alu 1 303 -9 221 357 70 23 chr1 233179112 233179484 -49014180 - L2 LINE L2 -212 3060 2641 * 782 332 34 46 chr1 233179465 233180136 -49013528 - L2 LINE L2 -832 2482 1820 22 0 0 0 chr1 233180140 233180162 -49013502 + AT_rich Low_complexity Low_complexity 1 22 0 1786 133 0 71 chr1 233180623 233180917 -49012747 - AluJb SINE Alu -39 273 1 696 210 7 7 chr1 233180921 233181064 -49012600 - FRAM SINE Alu -12 164 22 836 246 141 30 chr1 233181141 233181474 -49012190 - L1MC4 LINE L1 -974 7068 6699 508 326 25 51 chr1 233181480 233181756 -49011908 - L1MC4a LINE L1 -1253 6555 6287 2458 75 0 0 chr1 233181756 233182050 -49011614 + AluY SINE Alu 1 294 -17 1034 252 39 60 chr1 233182050 233182317 -49011347 - L1MC4a LINE L1 -1861 5947 5688 1847 121 52 4 chr1 233182317 233182612 -49011052 + AluSx SINE Alu 1 308 0 1034 252 39 60 chr1 233182612 233182728 -49010936 - L1MC4a LINE L1 -2120 5688 5571 207 0 0 0 chr1 233184028 233184051 -49009613 + (GA)n Simple_repeat Simple_repeat 2 24 0 183 259 74 25 chr1 233184495 233184576 -49009088 - L2 LINE L2 -5 3267 3183 1967 144 3 3 chr1 233185114 233185406 -49008258 + AluSq SINE Alu 8 299 -14 2267 110 17 0 chr1 233185417 233185717 -49007947 + AluSq SINE Alu 1 305 -8 2461 87 0 0 chr1 233186239 233186538 -49007126 + AluSq SINE Alu 1 299 -14 313 71 36 0 chr1 233186539 233186595 -49007069 + MER45B DNA AcHobo 846 903 -137 2339 84 0 17 chr1 233186607 233186905 -49006759 + AluSx SINE Alu 1 293 -19 935 263 46 7 chr1 233187411 233187692 -49005972 - L1MC4 LINE L1 -1902 5906 5615 383 258 111 95 chr1 233187762 233187952 -49005712 + MIR SINE MIR 58 250 -12 355 346 85 20 chr1 233188070 233188223 -49005441 + L2 LINE L2 3102 3264 -8 205 359 90 6 chr1 233190455 233190611 -49003053 - L3 LINE CR1 -862 715 547 272 275 9 92 chr1 233192355 233192464 -49001200 + L2 LINE L2 3197 3296 -17 273 283 88 35 chr1 233192559 233192672 -49000992 - MIR SINE MIR -48 214 96 323 103 46 126 chr1 233193968 233194022 -48999642 - MER116 DNA Mariner 0 80 34 2511 56 0 16 chr1 233194022 233194327 -48999337 - AluY SINE Alu -11 300 1 323 103 46 126 chr1 233194327 233194359 -48999305 - MER116 DNA Mariner -46 34 1 281 270 95 36 chr1 233194743 233194880 -48998784 - MIR3 SINE MIR -53 155 11 793 156 96 30 chr1 233195816 233195983 -48997681 - AluJb SINE Alu -20 292 115 2452 89 0 0 chr1 233196554 233196858 -48996806 - AluSx SINE Alu -8 304 1 408 286 0 21 chr1 233196862 233197002 -48996662 + MER58B DNA MER1_type 205 341 0 762 297 19 5 chr1 233197025 233197237 -48996427 + MIR SINE MIR 2 216 -46 2332 114 3 0 chr1 233198429 233198736 -48994928 + AluSg SINE Alu 1 308 -2 609 275 69 21 chr1 233199699 233199888 -48993776 - MIR3 SINE MIR -8 200 3 202 208 52 26 chr1 233199893 233199970 -48993694 - L2 LINE L2 -683 2631 2553 2082 155 3 0 chr1 233200042 233200346 -48993318 - AluSx SINE Alu -5 307 3 254 359 48 10 chr1 233200361 233200464 -48993200 - L2 LINE L2 -20 3252 3146 321 261 118 25 chr1 233201456 233201575 -48992089 - MIR SINE MIR -114 148 19 1924 163 3 10 chr1 233201932 233202245 -48991419 + AluJo SINE Alu 1 311 -1 571 258 31 8 chr1 233202379 233202507 -48991157 - L2 LINE L2 -4 3309 3179 452 282 139 14 chr1 233202525 233202741 -48990923 + MIR SINE MIR 20 262 0 180 268 24 0 chr1 233203386 233203427 -48990237 + L2 LINE L2 3263 3304 -9 212 267 167 17 chr1 233203533 233203653 -48990011 + MIR SINE MIR 125 262 0 2208 125 0 10 chr1 233203691 233204004 -48989660 + AluSq SINE Alu 1 310 -3 1004 109 68 0 chr1 233204005 233204152 -48989512 + AluSg/x SINE Alu 135 291 -18 1900 185 0 0 chr1 233204818 233205126 -48988538 - AluJb SINE Alu -4 308 1 290 305 62 16 chr1 233206545 233206673 -48986991 - MLT1L LTR MaLR -5 610 477 2077 115 17 7 chr1 233207719 233208007 -48985657 + AluSx SINE Alu 1 291 -21 194 287 10 40 chr1 233208021 233208122 -48985542 + L3b LINE CR1 1335 1432 -151 1608 277 99 19 chr1 233208961 233209756 -48983908 + L2 LINE L2 2437 3313 0 453 263 129 6 chr1 233209778 233209949 -48983715 - MIR SINE MIR -8 254 63 741 139 0 9 chr1 233210040 233210155 -48983509 - MER81 DNA DNA 0 114 1 597 218 0 16 chr1 233211279 233211403 -48982261 - AluJb SINE Alu -57 255 134 523 151 0 65 chr1 233212131 233212224 -48981440 + AluJ/FLAM SINE Alu 2 88 -224 218 313 25 0 chr1 233212454 233212534 -48981130 + L3b LINE CR1 1150 1231 -352 198 0 0 0 chr1 233213659 233213681 -48979983 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2088 126 0 32 chr1 233213682 233213992 -48979672 - AluSg SINE Alu -10 300 1 2239 109 3 0 chr1 233213994 233214287 -48979377 - AluSg SINE Alu -16 294 1 1205 143 0 0 chr1 233214791 233214959 -48978705 - AluSg/x SINE Alu -10 302 135 1686 174 7 20 chr1 233214960 233215258 -48978406 - AluJb SINE Alu -18 294 1 317 336 109 0 chr1 233215287 233215415 -48978249 + L2 LINE L2 3125 3266 -6 930 194 225 36 chr1 233217260 233217365 -48976299 + AluJo SINE Alu 1 85 -217 230 0 33 0 chr1 233217365 233217395 -48976269 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 930 194 225 36 chr1 233217395 233217542 -48976122 + AluJo SINE Alu 85 301 -1 831 163 6 11 chr1 233217567 233217745 -48975919 + GA-rich Low_complexity Low_complexity 2 178 0 476 167 0 10 chr1 233217759 233217861 -48975803 + GA-rich Low_complexity Low_complexity 4 104 0 617 159 84 0 chr1 233217983 233218090 -48975574 - L2 LINE L2 -6 3307 3192 2346 92 7 0 chr1 233218887 233219182 -48974482 - AluSx SINE Alu -7 305 9 957 253 0 23 chr1 233219510 233219771 -48973893 - L1M4 LINE L1 -3448 2698 2444 652 164 35 70 chr1 233219875 233220046 -48973618 + Charlie5 DNA MER1_type 2455 2619 0 600 285 58 14 chr1 233221436 233221643 -48972021 - MIR SINE MIR -34 228 13 22 0 0 0 chr1 233223013 233223035 -48970629 + AT_rich Low_complexity Low_complexity 1 22 0 2538 48 3 0 chr1 233224342 233224633 -48969031 - AluY SINE Alu -19 292 1 1983 149 0 3 chr1 233224633 233224922 -48968742 - AluJb SINE Alu -14 298 11 204 378 133 22 chr1 233224945 233225125 -48968539 - L3b LINE CR1 -26 1557 1358 741 139 0 9 chr1 233226244 233226359 -48967305 + MER81 DNA DNA 1 114 0 453 263 129 6 chr1 233226450 233226621 -48967043 + MIR SINE MIR 63 254 -8 1608 277 99 19 chr1 233226643 233227438 -48966226 - L2 LINE L2 0 3313 2437 218 245 21 105 chr1 233228277 233228392 -48965272 - L3b LINE CR1 -151 1432 1330 2171 101 17 7 chr1 233228392 233228680 -48964984 - AluSx SINE Alu -21 291 1 218 245 21 105 chr1 233228680 233228707 -48964957 - L3b LINE CR1 -253 1330 1302 280 147 68 18 chr1 233229223 233229386 -48964278 + (TG)n Simple_repeat Simple_repeat 2 172 0 228 197 164 0 chr1 233230044 233230105 -48963559 - MER81 DNA DNA -34 80 10 1827 186 0 13 chr1 233230151 233230458 -48963206 - AluJb SINE Alu -9 303 1 503 200 0 0 chr1 233230458 233230548 -48963116 - FRAM SINE Alu -10 166 77 194 0 0 37 chr1 233231088 233231115 -48962549 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1934 122 30 0 chr1 233231118 233231389 -48962275 - AluSx SINE Alu -33 279 1 793 161 0 0 chr1 233231410 233231528 -48962136 - FLAM_C SINE Alu -15 118 1 306 0 0 0 chr1 233235618 233235652 -48958012 + (GA)n Simple_repeat Simple_repeat 1 34 0 2272 122 3 0 chr1 233236922 233237233 -48956431 - AluSx SINE Alu 0 312 1 372 289 0 0 chr1 233237366 233237456 -48956208 - MER5A DNA MER1_type -89 100 11 785 248 45 10 chr1 233237468 233237670 -48955994 - MER3 DNA MER1_type 0 209 1 1513 146 64 119 chr1 233237842 233238170 -48955494 - AluSx SINE Alu -2 310 1 309 211 53 0 chr1 233238286 233238362 -48955302 + MER96 DNA MER1_type? 95 174 -1 383 231 106 10 chr1 233238643 233238747 -48954917 - MER81 DNA DNA 0 114 1 347 238 295 16 chr1 233238766 233238888 -48954776 + MIR SINE MIR 107 262 0 431 212 126 73 chr1 233239112 233239263 -48954401 - MIR3 SINE MIR -5 203 45 2000 132 61 0 chr1 233239903 233240183 -48953481 - AluSx SINE Alu -15 297 1 1838 171 10 3 chr1 233241029 233241327 -48952337 + AluJo SINE Alu 1 300 -12 2327 113 0 0 chr1 233241330 233241630 -48952034 + AluSx SINE Alu 2 301 -11 898 265 35 6 chr1 233242111 233242346 -48951318 - MIR SINE MIR -1 261 23 2378 81 0 14 chr1 233242540 233242836 -48950828 + AluSg SINE Alu 1 292 -18 262 280 194 11 chr1 233243858 233243951 -48949713 - L2 LINE L2 -5 3308 3199 258 383 24 18 chr1 233243947 233244156 -48949508 - L2 LINE L2 -350 2963 2751 * 2392 84 0 3 chr1 233244765 233245062 -48948602 + AluSc SINE Alu 1 296 -13 2367 110 0 0 chr1 233245909 233246218 -48947446 - AluSx SINE Alu -2 310 2 416 309 33 13 chr1 233246259 233246411 -48947253 - MIR SINE MIR -85 177 23 387 321 19 19 chr1 233247094 233247253 -48946411 + MER5A DNA MER1_type 27 185 -4 543 189 71 59 chr1 233247399 233247568 -48946096 - L1MC5 LINE L1 -51 7910 7740 1222 107 0 24 chr1 233247571 233247740 -48945924 + AluSg/x SINE Alu 127 291 -19 1853 119 0 0 chr1 233247771 233248015 -48945649 + AluSx SINE Alu 47 290 -22 529 216 46 62 chr1 233248056 233248297 -48945367 - L1MC5 LINE L1 -225 7736 7500 503 152 6 209 chr1 233248373 233248531 -48945133 + MER5A DNA MER1_type 64 189 0 2321 227 30 27 chr1 233248546 233249106 -48944558 - MER68 LTR ERV1 0 562 1 1065 219 66 80 chr1 233249107 233249373 -48944291 - L1MC5 LINE L1 -466 7495 7227 2272 100 3 0 chr1 233249373 233249663 -48944001 + AluSg SINE Alu 1 291 -19 1065 219 66 80 chr1 233249663 233250074 -48943590 - L1MC5 LINE L1 -734 7227 6715 2123 106 0 7 chr1 233250074 233250398 -48943266 - AluSx SINE Alu 0 322 1 233 146 0 0 chr1 233250408 233250449 -48943215 + Alu SINE Alu 29 69 -233 314 219 3 17 chr1 233250451 233250540 -48943124 - L1MC4a LINE L1 -1130 6678 6615 351 0 0 0 chr1 233250719 233250758 -48942906 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 2131 129 0 3 chr1 233250760 233251054 -48942610 - AluSx SINE Alu -19 293 1 361 339 77 47 chr1 233251069 233251302 -48942362 - L1MC4a LINE L1 -1276 6532 6293 1828 163 3 17 chr1 233251399 233251700 -48941964 + AluJo SINE Alu 7 303 -9 230 283 113 39 chr1 233251717 233251884 -48941780 - L1MC4a LINE L1 -1666 6142 5941 2004 114 3 21 chr1 233251884 233252210 -48941454 + AluSx SINE Alu 3 323 0 230 283 113 39 chr1 233252210 233252322 -48941342 - L1MC4a LINE L1 -1867 5941 5839 906 211 21 10 chr1 233252332 233252526 -48941138 + AluJo SINE Alu 90 285 -27 725 202 60 12 chr1 233253384 233253552 -48940112 - MIR SINE MIR -21 241 66 2370 107 0 0 chr1 233254105 233254415 -48939249 - AluSg SINE Alu 0 310 1 242 321 37 46 chr1 233254430 233254539 -48939125 - MIR SINE MIR -152 110 3 1171 138 6 0 chr1 233254635 233254802 -48938862 + AluJb SINE Alu 129 296 -16 604 97 80 44 chr1 233255713 233255826 -48937838 - FLAM_C SINE Alu -2 141 25 236 202 263 20 chr1 233255847 233255875 -48937789 - AluJb SINE Alu -2 300 280 510 46 0 0 chr1 233255875 233255940 -48937724 + (TC)n Simple_repeat Simple_repeat 2 66 0 236 202 263 20 chr1 233255940 233256010 -48937654 - AluJb SINE Alu -22 280 178 2571 69 0 0 chr1 233256690 233256993 -48936671 + AluY SINE Alu 1 303 -8 575 196 13 101 chr1 233257255 233257322 -48936342 + MIR SINE MIR 2 73 -189 2388 97 0 3 chr1 233257322 233257630 -48936034 - AluSg SINE Alu -3 307 1 2153 96 0 4 chr1 233257632 233257903 -48935761 - AluSq SINE Alu -43 270 1 575 196 13 101 chr1 233257903 233257990 -48935674 + MIR SINE MIR 74 145 -117 851 101 7 114 chr1 233258334 233258398 -48935266 - FLAM_C SINE Alu -169 165 96 2087 104 16 45 chr1 233258398 233258706 -48934958 + AluSx SINE Alu 1 299 -13 851 101 7 114 chr1 233258706 233258822 -48934842 - FLAM_C SINE Alu -238 96 1 2389 88 3 0 chr1 233261030 233261325 -48932339 + AluSp SINE Alu 1 296 -17 1696 126 133 0 chr1 233261325 233261595 -48932069 + AluSx SINE Alu 1 306 -6 2424 87 10 0 chr1 233261719 233262028 -48931636 + AluSq SINE Alu 1 312 -1 218 214 0 0 chr1 233262559 233262601 -48931063 + T-rich Low_complexity Low_complexity 4 45 0 189 107 0 0 chr1 233262685 233262713 -48930951 + (A)n Simple_repeat Simple_repeat 1 28 0 2315 103 3 0 chr1 233264025 233264325 -48929339 + AluSg SINE Alu 1 301 -9 2132 98 54 0 chr1 233264351 233264646 -48929018 + AluY SINE Alu 1 311 0 658 103 0 0 chr1 233265197 233265284 -48928380 + AluSg/x SINE Alu 211 297 -15 203 330 0 41 chr1 233265534 233265631 -48928033 + CT-rich Low_complexity Low_complexity 3 95 0 194 91 30 0 chr1 233266137 233266170 -48927494 + T-rich Low_complexity Low_complexity 3 36 0 2161 85 27 24 chr1 233266478 233266772 -48926892 + AluY SINE Alu 1 295 -16 2302 92 10 0 chr1 233266881 233267176 -48926488 + AluSx SINE Alu 1 298 -14 2155 123 10 0 chr1 233267176 233267558 -48926106 + AluSx SINE Alu 1 385 0 2280 106 0 7 chr1 233268104 233268406 -48925258 + AluSq SINE Alu 1 300 -13 2308 108 3 3 chr1 233268406 233268713 -48924951 + AluSp SINE Alu 1 307 -6 562 175 0 21 chr1 233270444 233270541 -48923123 + MLT1C LTR MaLR 1 95 -410 1680 112 0 0 chr1 233270542 233270756 -48922908 + AluSx SINE Alu 1 214 -98 400 138 75 0 chr1 233270756 233270836 -48922828 - MLT1D LTR MaLR -333 172 87 1169 225 0 8 chr1 233270877 233271117 -48922547 - AluSx SINE Alu -74 238 1 1007 227 45 0 chr1 233271122 233271356 -48922308 + MLT1C LTR MaLR 157 564 -62 2334 103 0 6 chr1 233271356 233271668 -48921996 - AluSg SINE Alu 0 310 1 1007 227 45 0 chr1 233271668 233271681 -48921983 + MLT1C LTR MaLR 564 575 -51 * 1101 119 0 0 chr1 233271673 233271841 -48921823 - MER41B LTR ERV1 -467 168 1 404 263 89 98 chr1 233271914 233272138 -48921526 - L2 LINE L2 -32 3240 3019 1136 169 0 91 chr1 233272159 233272365 -48921299 - AluJo SINE Alu -3 309 127 2338 97 0 13 chr1 233272365 233272665 -48920999 + AluSg SINE Alu 1 296 -14 1136 169 0 91 chr1 233272665 233272701 -48920963 - AluJo SINE Alu -185 127 89 2323 81 3 0 chr1 233272737 233273032 -48920632 + AluSp SINE Alu 1 296 -17 247 219 55 0 chr1 233273047 233273120 -48920544 - HAL1b LINE L1 -29 1319 1243 234 214 0 14 chr1 233273124 233273194 -48920470 - HAL1b LINE L1 -240 1108 1040 1829 148 0 7 chr1 233273196 233273493 -48920171 + AluSx SINE Alu 1 295 -17 800 134 8 8 chr1 233273493 233273612 -48920052 - AluJo/FLAM SINE Alu -192 120 2 1298 81 29 38 chr1 233275264 233275473 -48918191 + AluSc SINE Alu 82 288 -21 2167 91 10 0 chr1 233275586 233275882 -48917782 + AluSx SINE Alu 1 299 -13 2142 102 3 19 chr1 233275882 233276197 -48917467 + AluSg SINE Alu 1 310 0 2182 94 0 23 chr1 233277343 233277652 -48916012 + AluSq SINE Alu 2 303 -10 182 188 0 21 chr1 233281571 233281619 -48912045 + T-rich Low_complexity Low_complexity 112 158 0 195 139 0 0 chr1 233285522 233285558 -48908106 + (T)n Simple_repeat Simple_repeat 1 36 0 787 109 0 62 chr1 233285858 233285986 -48907678 + FLAM_A SINE Alu 1 120 -13 189 0 0 0 chr1 233285987 233286008 -48907656 + (CA)n Simple_repeat Simple_repeat 2 22 0 2262 94 3 0 chr1 233286147 233286445 -48907219 + AluSp SINE Alu 1 299 -14 2032 121 0 26 chr1 233286448 233286578 -48907086 + AluSp SINE Alu 3 135 -178 2267 94 0 3 chr1 233286578 233286887 -48906777 + AluY SINE Alu 1 308 -3 2032 121 0 26 chr1 233286887 233287062 -48906602 + AluSp SINE Alu 135 300 -13 2276 96 0 0 chr1 233287207 233287509 -48906155 + AluSc SINE Alu 1 302 -7 430 129 0 0 chr1 233287914 233287984 -48905680 - AluSp/q SINE Alu -5 308 239 2033 96 0 7 chr1 233288085 233288365 -48905299 - AluSq SINE Alu -35 278 1 2173 96 0 26 chr1 233289021 233289324 -48904340 + AluSx SINE Alu 9 303 -9 1465 184 46 0 chr1 233289468 233289750 -48903914 - AluJo SINE Alu -17 295 1 1318 152 0 0 chr1 233290135 233290379 -48903285 + AluSg/x SINE Alu 83 312 0 1946 144 0 3 chr1 233290384 233290690 -48902974 + AluSx SINE Alu 2 306 -6 2088 129 7 0 chr1 233291028 233291337 -48902327 + AluSx SINE Alu 1 311 -1 1442 201 16 36 chr1 233291394 233291523 -48902141 + AluJb SINE Alu 1 131 -181 2098 101 17 0 chr1 233291523 233291811 -48901853 + AluSx SINE Alu 1 293 -19 1442 201 16 36 chr1 233291811 233291989 -48901675 + AluJb SINE Alu 131 302 -10 243 229 0 0 chr1 233291996 233292044 -48901620 + L3 LINE CR1 1528 1575 -2 241 362 32 0 chr1 233292361 233292455 -48901209 + MIR SINE MIR 17 113 -95 2057 130 0 3 chr1 233292685 233292992 -48900672 - AluSp SINE Alu -7 306 1 1195 118 0 0 chr1 233292994 233293164 -48900500 - AluSp SINE Alu -15 298 129 324 119 0 0 chr1 233293164 233293223 -48900441 + (T)n Simple_repeat Simple_repeat 1 59 0 1050 90 0 0 chr1 233293223 233293356 -48900308 - AluSq/x SINE Alu -179 133 1 280 191 381 0 chr1 233293480 233293585 -48900079 - L2 LINE L2 0 3313 3169 1023 158 0 0 chr1 233293585 233293749 -48899915 + FRAM SINE Alu 1 163 -13 185 245 19 0 chr1 233293765 233293818 -48899846 - L2 LINE L2 -140 3173 3120 2184 97 3 3 chr1 233293818 233294117 -48899547 + AluSq SINE Alu 1 299 -14 2137 107 17 0 chr1 233294128 233294428 -48899236 + AluSq SINE Alu 1 305 -8 2004 105 48 0 chr1 233294950 233295245 -48898419 + AluSp SINE Alu 1 309 -4 1099 102 17 0 chr1 233295245 233295421 -48898243 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 658 22 22 22 chr1 233295421 233295513 -48898151 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 995 134 0 2 chr1 233295523 233295762 -48897902 + AluSx SINE Alu 2 297 -15 27 0 0 0 chr1 233296339 233296366 -48897298 + AT_rich Low_complexity Low_complexity 1 27 0 1110 122 31 142 chr1 233296369 233296433 -48897231 + MER45B DNA AcHobo 785 855 -726 2241 97 0 0 chr1 233296433 233296732 -48896932 + AluSq SINE Alu 1 299 -14 1110 122 31 142 chr1 233296732 233296801 -48896863 + MER45B DNA AcHobo 855 930 -651 2446 50 0 22 chr1 233296801 233297118 -48896546 + AluY SINE Alu 1 310 -1 1110 122 31 142 chr1 233297118 233297132 -48896532 + MER45B DNA AcHobo 930 944 -637 1373 129 12 62 chr1 233297132 233297181 -48896483 + MER30 DNA MER1_type 2 52 -178 2006 132 3 0 chr1 233297181 233297491 -48896173 + AluSq SINE Alu 1 311 -2 1373 129 12 62 chr1 233297491 233297682 -48895982 + MER30 DNA MER1_type 52 230 0 1110 122 31 142 chr1 233297682 233297731 -48895933 + MER45B DNA AcHobo 944 997 -584 2386 57 0 3 chr1 233297731 233298028 -48895636 - AluY SINE Alu -15 296 1 2212 105 3 0 chr1 233298030 233298336 -48895328 - AluSx SINE Alu -5 307 1 1110 122 31 142 chr1 233298336 233298421 -48895243 + MER45B DNA AcHobo 998 1040 0 469 87 0 14 chr1 233298588 233298657 -48895007 + Alu SINE Alu 227 294 -17 454 123 74 0 chr1 233298657 233298738 -48894926 + MLT1D LTR MaLR 86 172 -333 1576 112 0 0 chr1 233298738 233298952 -48894712 - AluSx SINE Alu -98 214 1 596 175 0 21 chr1 233298953 233299050 -48894614 - MLT1D LTR MaLR -410 95 1 2183 110 0 0 chr1 233299183 233299493 -48894171 + AluY SINE Alu 1 310 -1 2046 130 3 0 chr1 233299554 233299854 -48893810 - AluSq SINE Alu -4 309 9 1527 235 3 19 chr1 233300182 233300561 -48893103 - L1M4 LINE L1 -3448 2698 2326 261 0 0 0 chr1 233300561 233300590 -48893074 + (CTTG)n Simple_repeat Simple_repeat 2 30 0 1691 169 0 17 chr1 233300612 233300913 -48892751 + AluJb SINE Alu 1 296 -16 193 226 36 36 chr1 233300928 233301012 -48892652 - L2 LINE L2 -1208 2106 2023 1891 161 3 0 chr1 233301012 233301317 -48892347 + AluSx SINE Alu 1 306 -6 609 278 79 19 chr1 233301397 233301613 -48892051 + MIR SINE MIR 32 260 -2 1652 126 123 58 chr1 233302216 233302558 -48891106 + THE1B LTR MaLR 1 364 0 200 304 0 0 chr1 233302591 233302637 -48891027 + L2 LINE L2 3008 3053 -219 489 198 28 0 chr1 233302733 233302839 -48890825 + Charlie8 DNA MER1_type 84 192 -2225 1423 130 4 57 chr1 233302843 233303089 -48890575 - AluSg SINE Alu -17 293 61 1875 113 3 3 chr1 233303137 233303419 -48890245 + AluSp SINE Alu 9 290 -23 372 111 37 0 chr1 233303519 233303573 -48890091 + AluS SINE Alu 233 288 -12 895 168 7 7 chr1 233303581 233303736 -48889928 - MER6A DNA MER2_type 0 605 451 1062 197 0 35 chr1 233303739 233303967 -48889697 - AluJo SINE Alu -6 306 87 443 112 0 122 chr1 233303967 233304065 -48889599 - MER6A DNA MER2_type -150 455 370 970 77 0 49 chr1 233304065 233304179 -48889485 + AluSq/x SINE Alu 1 108 -205 3511 53 0 49 chr1 233304179 233304534 -48889130 - MLT2A1 LTR ERVL 0 444 116 2424 68 3 0 chr1 233304534 233304844 -48888820 - AluY SINE Alu 0 311 1 3511 53 0 49 chr1 233304844 233304955 -48888709 - MLT2A1 LTR ERVL -328 116 1 970 77 0 49 chr1 233304955 233304983 -48888681 + AluSq/x SINE Alu 108 136 -177 786 181 94 0 chr1 233304983 233305143 -48888521 + FAM SINE Alu 1 175 0 1990 185 32 19 chr1 233305143 233305516 -48888148 - MER6A DNA MER2_type -222 383 6 2028 99 3 11 chr1 233305786 233306097 -48887567 + AluSq SINE Alu 1 309 0 1821 235 180 0 chr1 233306314 233306786 -48886878 + MER69 DNA AcHobo 9 565 -1961 2020 97 0 75 chr1 233306798 233307118 -48886546 - AluSx SINE Alu -16 296 1 2236 94 7 0 chr1 233307130 233307437 -48886227 - AluSx SINE Alu -3 309 1 2391 186 72 29 chr1 233307485 233307995 -48885669 + MLT1F LTR MaLR 3 534 -8 286 188 0 29 chr1 233308051 233308120 -48885544 + MER69 DNA AcHobo 2008 2074 -452 1971 132 7 7 chr1 233308128 233308438 -48885226 - AluSx SINE Alu -2 310 1 342 194 21 0 chr1 233308451 233308544 -48885120 + MER69 DNA AcHobo 2368 2462 -64 1853 126 7 0 chr1 233308865 233309158 -48884506 - AluSx SINE Alu -9 303 9 404 241 26 75 chr1 233309219 233309327 -48884337 + L1MC4a LINE L1 5716 5815 -306 1897 99 4 0 chr1 233309327 233309589 -48884075 + AluSp SINE Alu 44 306 -7 404 241 26 75 chr1 233309589 233309681 -48883983 + L1MC4a LINE L1 5815 5910 -211 1824 126 4 0 chr1 233309732 233309995 -48883669 - AluSg SINE Alu -46 264 1 364 198 19 75 chr1 233309995 233310101 -48883563 + HsTC2 DNA Tc2 1797 1896 -2 195 162 0 0 chr1 233310280 233310317 -48883347 + A-rich Low_complexity Low_complexity 1 37 0 414 297 31 62 chr1 233310700 233310863 -48882801 + L1ME4a LINE L1 5933 6091 -30 2270 97 3 0 chr1 233310863 233311171 -48882493 - AluSc SINE Alu 0 309 1 414 297 31 62 chr1 233311171 233311202 -48882462 + L1ME4a LINE L1 6091 6121 0 180 297 14 14 chr1 233311511 233311585 -48882079 - MIR SINE MIR -17 245 172 437 240 182 8 chr1 233313175 233313296 -48880368 + MIR3 SINE MIR 16 157 -51 24 0 0 0 chr1 233316721 233316745 -48876919 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr1 233317131 233317153 -48876511 + AT_rich Low_complexity Low_complexity 1 22 0 187 268 99 0 chr1 233317424 233317495 -48876169 + MIR3 SINE MIR 130 207 -1 21 36 0 0 chr1 233318640 233318668 -48874996 + AT_rich Low_complexity Low_complexity 1 28 0 245 50 0 25 chr1 233318737 233318777 -48874887 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2015 138 3 0 chr1 233319201 233319513 -48874151 - AluSq SINE Alu 0 313 1 1534 189 7 10 chr1 233319630 233319927 -48873737 - AluJo SINE Alu -16 296 1 364 251 144 100 chr1 233319936 233320175 -48873489 - L1M4 LINE L1 -1487 4659 4391 2368 57 3 3 chr1 233320175 233320473 -48873191 - AluY SINE Alu -13 298 1 364 251 144 100 chr1 233320473 233320664 -48873000 - L1M4 LINE L1 -1755 4391 4210 2128 119 0 19 chr1 233320675 233320994 -48872670 - AluSq SINE Alu 0 313 1 2003 84 38 3 chr1 233321165 233321452 -48872212 - AluSg SINE Alu -13 297 1 2048 120 3 7 chr1 233322315 233322624 -48871040 - AluSx SINE Alu -4 308 1 346 274 45 126 chr1 233322929 233323079 -48870585 - L1M4 LINE L1 -2229 3917 3789 598 162 111 34 chr1 233323079 233323196 -48870468 - FLAM_C SINE Alu -7 126 1 346 274 45 126 chr1 233323196 233323268 -48870396 - L1M4 LINE L1 -2357 3789 3713 884 211 0 0 chr1 233323307 233323473 -48870191 - FRAM SINE Alu -12 164 1 1266 163 5 18 chr1 233323544 233323765 -48869899 - AluJo SINE Alu -8 304 87 1871 176 0 0 chr1 233323767 233324063 -48869601 - AluJb SINE Alu -16 296 1 492 298 60 48 chr1 233324156 233324592 -48869072 - HAL1 LINE L1 -828 1679 1239 204 213 0 0 chr1 233324789 233324836 -48868828 + CT-rich Low_complexity Low_complexity 1 47 0 2253 109 3 0 chr1 233324858 233325151 -48868513 - AluSq SINE Alu -19 294 1 2222 109 0 7 chr1 233325194 233325497 -48868167 - AluSg SINE Alu -9 301 1 2279 98 7 3 chr1 233326881 233327187 -48866477 + AluSg SINE Alu 1 307 -3 785 160 15 0 chr1 233327352 233327483 -48866181 - FLAM_C SINE Alu 0 133 1 2449 71 0 0 chr1 233327631 233327926 -48865738 - AluY SINE Alu -16 295 1 2037 104 3 43 chr1 233328070 233328369 -48865295 + AluSq SINE Alu 15 301 -12 1076 137 0 40 chr1 233328369 233328544 -48865120 + AluSq SINE Alu 137 304 -9 1481 170 0 4 chr1 233328722 233328957 -48864707 - AluSx SINE Alu -18 294 61 1820 161 16 3 chr1 233329018 233329322 -48864342 - AluSx SINE Alu -4 308 1 2797 86 0 3 chr1 233329323 233329695 -48863969 - L1PA12 LINE L1 -5 6163 5793 1165 168 56 33 chr1 233329719 233329785 -48863879 - L1MC/D LINE L1 -743 5403 5340 2260 120 0 0 chr1 233329785 233330084 -48863580 - AluSx SINE Alu -9 303 5 1165 168 56 33 chr1 233330084 233330397 -48863267 - L1MC/D LINE L1 -806 5340 5136 1286 120 5 0 chr1 233330401 233330585 -48863079 - AluSq SINE Alu 0 313 129 481 218 158 6 chr1 233330607 233330772 -48862892 - L1MC/D LINE L1 -1113 5033 4844 1039 191 72 58 chr1 233330782 233331059 -48862605 - MLT1C LTR MaLR 0 467 187 1955 168 41 84 chr1 233331082 233331450 -48862214 - MLT1-int LTR MaLR -662 709 252 2257 114 7 0 chr1 233331450 233331747 -48861917 + AluSx SINE Alu 1 299 -13 1955 168 41 84 chr1 233331747 233331989 -48861675 - MLT1-int LTR MaLR -1119 252 1 2058 139 3 0 chr1 233332042 233332336 -48861328 - AluSx SINE Alu -17 295 1 1953 144 0 13 chr1 233332413 233332725 -48860939 - AluSx SINE Alu -4 308 1 210 143 0 0 chr1 233333504 233333539 -48860125 + (TA)n Simple_repeat Simple_repeat 1 35 0 1669 178 3 32 chr1 233333549 233333858 -48859806 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr1 233334413 233334436 -48859228 + AT_rich Low_complexity Low_complexity 1 23 0 2162 104 14 0 chr1 233334954 233335251 -48858413 - AluSg SINE Alu -7 303 3 2036 141 7 10 chr1 233335994 233336300 -48857364 + AluSq SINE Alu 1 305 -8 2313 113 0 0 chr1 233336312 233336622 -48857042 + AluSx SINE Alu 3 312 0 232 224 17 0 chr1 233336651 233336709 -48856955 - L1MCa LINE L1 -4362 2064 2006 219 36 0 0 chr1 233336712 233336740 -48856924 + (TG)n Simple_repeat Simple_repeat 2 29 0 1822 118 0 4 chr1 233336840 233337086 -48856578 + AluSg SINE Alu 54 298 -12 1308 235 25 58 chr1 233337088 233337327 -48856337 - L1MC4 LINE L1 -382 7660 7440 1746 156 11 7 chr1 233337327 233337609 -48856055 - AluSx SINE Alu -28 284 2 1308 235 25 58 chr1 233337609 233337803 -48855861 - L1MC4 LINE L1 -602 7440 7241 1715 144 76 55 chr1 233337847 233338214 -48855450 + THE1C LTR MaLR 1 375 0 1699 203 67 8 chr1 233338216 233338575 -48855089 - L1MC4 LINE L1 -990 7052 6673 2275 111 0 0 chr1 233338584 233338891 -48854773 - AluSx SINE Alu -5 307 1 2283 112 16 0 chr1 233338901 233339206 -48854458 - AluSx SINE Alu -2 310 1 3159 125 2 0 chr1 233339206 233339662 -48854002 - MER41B LTR ERV1 -177 458 2 1643 213 3 31 chr1 233339663 233339983 -48853681 - MER45B DNA AcHobo -729 311 1 1874 159 10 0 chr1 233340563 233340853 -48852811 - AluJb SINE Alu -19 293 1 2078 128 21 0 chr1 233341203 233341493 -48852171 + AluSq SINE Alu 1 296 -17 397 174 128 46 chr1 233341851 233341960 -48851704 - MER21B LTR ERV1 -58 805 688 3311 218 80 19 chr1 233341961 233342301 -48851363 - L1MC4 LINE L1 -1544 6498 6180 1420 86 83 189 chr1 233342301 233342640 -48851024 - AluSc SINE Alu -6 303 1 3311 218 80 19 chr1 233342640 233343249 -48850415 - L1MC4 LINE L1 -1862 6180 5491 2202 110 23 0 chr1 233343258 233343558 -48850106 - AluSx SINE Alu -5 307 1 258 32 0 0 chr1 233344891 233344922 -48848742 + (A)n Simple_repeat Simple_repeat 1 31 0 418 316 76 6 chr1 233345042 233345200 -48848464 + MIR SINE MIR 2 170 -92 1297 130 0 10 chr1 233345200 233345400 -48848264 - AluSq SINE Alu -9 304 107 292 188 0 0 chr1 233345401 233345449 -48848215 + LTR26 LTR ERV1 556 603 0 559 275 22 28 chr1 233345517 233345699 -48847965 + MARNA DNA Mariner 369 549 -37 1507 161 0 0 chr1 233345700 233345930 -48847734 + AluJb SINE Alu 1 230 -82 2382 96 0 3 chr1 233345951 233346253 -48847411 + AluSc SINE Alu 2 302 -7 962 116 13 0 chr1 233348105 233348260 -48845404 + (TTTC)n Simple_repeat Simple_repeat 2 158 0 2111 104 0 4 chr1 233348262 233348540 -48845124 - AluSc SINE Alu -32 277 1 397 266 136 40 chr1 233348545 233348722 -48844942 - MIR SINE MIR -68 194 1 23 0 0 0 chr1 233348881 233348904 -48844760 + GC_rich Low_complexity Low_complexity 1 23 0 2227 101 0 11 chr1 233349204 233349569 -48844095 - AluSx SINE Alu 0 362 1 1335 252 128 70 chr1 233349570 233350355 -48843309 + L2 LINE L2 2285 3023 -290 2240 113 0 0 chr1 233350355 233350647 -48843017 - AluSp SINE Alu -21 292 1 1335 252 128 70 chr1 233350647 233350713 -48842951 + L2 LINE L2 3023 3084 -229 714 169 8 0 chr1 233350713 233350831 -48842833 - FLAM_C SINE Alu -13 120 2 1335 252 128 70 chr1 233350831 233350967 -48842697 + L2 LINE L2 3084 3313 0 471 33 16 0 chr1 233351006 233351067 -48842597 + L1M2 LINE L1 5555 5616 -675 2267 104 3 3 chr1 233351068 233351375 -48842289 + AluSp SINE Alu 1 307 -6 1252 123 70 145 chr1 233351378 233351518 -48842146 + L1MA8 LINE L1 5960 6109 -182 2250 105 0 13 chr1 233351518 233351832 -48841832 + AluSx SINE Alu 3 312 0 1252 123 70 145 chr1 233351832 233352049 -48841615 + L1MA8 LINE L1 6109 6290 -1 1953 107 37 37 chr1 233352182 233352481 -48841183 - AluSq SINE Alu -14 299 1 34 0 0 0 chr1 233354801 233354835 -48838829 + AT_rich Low_complexity Low_complexity 1 34 0 2345 92 7 0 chr1 233355192 233355497 -48838167 - AluSp SINE Alu -6 307 1 1898 159 7 0 chr1 233355544 233355834 -48837830 - AluSq SINE Alu -21 292 1 4297 85 2 0 chr1 233355977 233356530 -48837134 - MER41A LTR ERV1 0 554 1 1963 129 21 0 chr1 233356558 233356862 -48836802 + AluSp SINE Alu 1 310 0 1542 109 0 45 chr1 233356964 233357184 -48836480 - AluSg SINE Alu -100 210 1 2189 113 3 0 chr1 233357186 233357479 -48836185 - AluSg SINE Alu -16 294 1 2383 97 7 0 chr1 233357489 233357799 -48835865 - AluSx SINE Alu 0 312 1 1907 172 0 0 chr1 233357808 233358110 -48835554 - AluSx SINE Alu -10 302 1 414 286 107 10 chr1 233358269 233358465 -48835199 + MIR SINE MIR 47 261 -1 355 221 195 18 chr1 233358765 233358914 -48834750 - FLAM_A SINE Alu 0 169 1 890 109 7 44 chr1 233358914 233359002 -48834662 - AluJo SINE Alu -176 136 53 3757 103 35 29 chr1 233359002 233359077 -48834587 - MER41A LTR ERV1 0 554 481 2218 123 16 0 chr1 233359077 233359385 -48834279 + AluSq SINE Alu 1 313 0 3757 103 35 29 chr1 233359385 233359860 -48833804 - MER41A LTR ERV1 -73 481 1 890 109 7 44 chr1 233359860 233359908 -48833756 - AluJo SINE Alu -259 53 5 2374 82 10 0 chr1 233359937 233360231 -48833433 - AluSp SINE Alu -16 297 1 1974 140 0 7 chr1 233360237 233360529 -48833135 - AluSx SINE Alu -22 290 1 247 219 55 0 chr1 233360605 233360678 -48832986 + HAL1b LINE L1 1243 1319 -29 2308 81 3 0 chr1 233360693 233360988 -48832676 - AluSp SINE Alu -17 296 1 1102 165 0 93 chr1 233361024 233361060 -48832604 + AluJo SINE Alu 89 127 -185 2318 97 0 13 chr1 233361060 233361360 -48832304 - AluSg SINE Alu -14 296 1 1102 165 0 93 chr1 233361360 233361560 -48832104 + AluJo SINE Alu 127 303 -9 21 0 0 0 chr1 233361562 233361583 -48832081 + AT_rich Low_complexity Low_complexity 1 21 0 333 263 89 98 chr1 233361587 233361811 -48831853 + L2 LINE L2 3019 3240 -32 1158 113 0 0 chr1 233361884 233362052 -48831612 + MER41B LTR ERV1 1 168 -467 2180 100 7 32 chr1 233362057 233362367 -48831297 + AluSc SINE Alu 1 302 -7 523 230 34 34 chr1 233362515 233362663 -48831001 - L1MC4a LINE L1 -1226 6582 6435 1708 250 35 39 chr1 233363607 233364095 -48829569 - MER68 LTR ERV1 -75 487 2 523 264 74 32 chr1 233364162 233364378 -48829286 + L1MC4a LINE L1 5670 5894 -1914 2198 105 6 13 chr1 233364405 233364718 -48828946 + AluSx SINE Alu 1 311 -1 2225 189 125 62 chr1 233364854 233365216 -48828448 - MER82 DNA MER2_type 0 653 235 2392 82 16 7 chr1 233365216 233365519 -48828145 + AluSx SINE Alu 1 306 -6 2225 189 125 62 chr1 233365519 233365770 -48827894 - MER82 DNA MER2_type -418 235 1 2161 102 37 3 chr1 233365850 233366145 -48827519 - AluSx SINE Alu -6 306 2 233 211 308 0 chr1 233366250 233366354 -48827310 + L1ME4a LINE L1 5986 6121 0 336 173 0 0 chr1 233366672 233366724 -48826940 - MER66B LTR ERV1 -140 346 295 35 54 0 0 chr1 233366730 233366786 -48826878 + AT_rich Low_complexity Low_complexity 1 56 0 65 56 0 0 chr1 233366893 233367000 -48826664 + AT_rich Low_complexity Low_complexity 1 107 0 288 298 30 23 chr1 233367048 233367179 -48826485 - L1ME LINE L1 -535 5586 5455 1380 276 65 16 chr1 233367383 233367893 -48825771 - L1ME3A LINE L1 0 6170 5636 2508 60 0 7 chr1 233367978 233368276 -48825388 + AluY SINE Alu 1 296 -15 378 286 197 6 chr1 233368389 233368567 -48825097 - MIR SINE MIR 0 262 51 226 326 142 7 chr1 233369028 233369169 -48824495 - MIR SINE MIR -10 252 93 960 209 27 0 chr1 233369295 233369482 -48824182 + MER58A DNA MER1_type 30 221 -3 476 246 27 9 chr1 233370129 233370239 -48823425 - AluSp SINE Alu -160 153 42 2040 129 0 7 chr1 233371094 233371388 -48822276 - AluSp SINE Alu -12 301 10 2163 129 0 0 chr1 233371403 233371698 -48821966 - AluSx SINE Alu -17 295 1 1967 130 4 7 chr1 233371989 233372125 -48821539 + AluSx SINE Alu 1 136 -176 2423 81 10 0 chr1 233372125 233372422 -48821242 + AluSg SINE Alu 1 300 -10 1967 130 4 7 chr1 233372422 233372562 -48821102 + AluSx SINE Alu 136 276 -36 25 31 0 0 chr1 233372562 233372594 -48821070 + AT_rich Low_complexity Low_complexity 1 32 0 1872 174 0 3 chr1 233373310 233373609 -48820055 - AluJb SINE Alu -14 298 1 2058 90 29 7 chr1 233373701 233373980 -48819684 - AluSx SINE Alu -27 285 1 184 200 0 0 chr1 233374387 233374417 -48819247 - MIR SINE MIR -149 113 84 22 35 0 0 chr1 233374550 233374579 -48819085 + AT_rich Low_complexity Low_complexity 1 29 0 764 198 0 0 chr1 233375139 233375260 -48818404 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr1 233375332 233375353 -48818311 + AT_rich Low_complexity Low_complexity 1 21 0 1973 99 0 89 chr1 233375505 233375818 -48817846 + AluSg SINE Alu 1 285 -25 277 366 37 15 chr1 233375825 233375959 -48817705 + MIR3 SINE MIR 37 173 -35 1826 138 22 0 chr1 233376074 233376342 -48817322 + AluJb SINE Alu 23 296 -16 1668 139 3 81 chr1 233376492 233376815 -48816849 - AluJo SINE Alu -14 298 1 564 321 124 45 chr1 233377224 233377706 -48815958 - L2 LINE L2 -2 3270 2723 2242 121 0 13 chr1 233377706 233378021 -48815643 + AluSx SINE Alu 1 311 -1 564 321 124 45 chr1 233378021 233378242 -48815422 - L2 LINE L2 -549 2723 2521 665 236 24 0 chr1 233378248 233378375 -48815289 - FLAM_A SINE Alu 0 133 4 2350 104 0 13 chr1 233378825 233379141 -48814523 - AluSx SINE Alu 0 312 1 970 127 0 0 chr1 233379141 233379275 -48814389 - AluSq/x SINE Alu -177 135 2 367 293 87 48 chr1 233379591 233379643 -48814021 + L1ME4a LINE L1 5670 5719 -402 2145 116 0 0 chr1 233379643 233379971 -48813693 - AluSq SINE Alu 0 328 1 367 293 87 48 chr1 233379971 233380125 -48813539 + L1ME4a LINE L1 5719 5885 -236 9850 53 8 90 chr1 233380189 233381636 -48812028 - SVA Other Other 0 1386 59 195 42 0 0 chr1 233381636 233381660 -48812004 + (AGGGGG)n Simple_repeat Simple_repeat 2 25 0 22 56 0 0 chr1 233381663 233381699 -48811965 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr1 233381857 233381893 -48811771 + AT_rich Low_complexity Low_complexity 1 36 0 322 303 33 59 chr1 233381966 233382118 -48811546 - L1M4 LINE L1 -2365 3781 3634 306 306 119 18 chr1 233382321 233382540 -48811124 - HAL1 LINE L1 -1154 1353 1113 699 229 89 51 chr1 233382544 233382758 -48810906 - MER58A DNA MER1_type -1 223 2 2404 78 3 0 chr1 233382896 233383191 -48810473 - AluSp SINE Alu -14 299 4 2139 109 13 29 chr1 233383193 233383506 -48810158 - AluSx SINE Alu -4 308 1 1961 128 10 10 chr1 233384620 233384924 -48808740 + AluSq SINE Alu 1 304 -9 886 154 0 22 chr1 233385032 233385168 -48808496 + FLAM_C SINE Alu 1 133 0 253 301 150 0 chr1 233385560 233385673 -48807991 + L2 LINE L2 3124 3253 -60 1296 125 0 10 chr1 233385880 233386072 -48807592 + AluSg/x SINE Alu 123 312 0 2111 138 0 7 chr1 233387069 233387373 -48806291 - AluSx SINE Alu -10 302 1 1221 23 0 0 chr1 233387822 233387954 -48805710 + AluY SINE Alu 2 133 -178 1902 149 0 0 chr1 233388125 233388400 -48805264 - AluSx SINE Alu -37 275 1 237 264 258 0 chr1 233388511 233388670 -48804994 - L1ME LINE L1 -265 5856 5657 2014 149 0 0 chr1 233390544 233390845 -48802819 - AluSx SINE Alu -11 301 1 1830 159 9 29 chr1 233390896 233391211 -48802453 + AluJb SINE Alu 1 309 -3 2055 130 0 10 chr1 233394272 233394565 -48799099 - AluSx SINE Alu -22 290 1 2144 113 0 14 chr1 233395101 233395394 -48798270 + AluSx SINE Alu 1 289 -23 1676 82 0 0 chr1 233395936 233396142 -48797522 + AluSc SINE Alu 96 301 -8 820 175 14 7 chr1 233396301 233396444 -48797220 + MLT1H1 LTR MaLR 412 555 0 1548 186 4 4 chr1 233396807 233397082 -48796582 + AluJb SINE Alu 15 289 -23 837 204 31 6 chr1 233397172 233397334 -48796330 - FAM SINE Alu -9 166 1 1839 165 7 3 chr1 233397343 233397646 -48796018 - AluJb SINE Alu -8 304 1 2406 90 0 3 chr1 233397650 233397950 -48795714 - AluSg SINE Alu -11 299 1 2177 93 0 0 chr1 233398007 233398309 -48795355 - AluSx SINE Alu 0 315 14 262 310 50 10 chr1 233398396 233398496 -48795168 + MIR SINE MIR 40 143 -65 242 299 69 35 chr1 233398536 233398623 -48795041 + MIR SINE MIR 6 95 -167 270 304 95 25 chr1 233398674 233398832 -48794832 - MIR SINE MIR -65 197 29 2516 63 0 0 chr1 233399147 233399450 -48794214 + AluY SINE Alu 1 303 -8 353 234 36 36 chr1 233401289 233401400 -48792264 - FLAM_C SINE Alu -22 111 1 2344 70 7 10 chr1 233401402 233401701 -48791963 - AluSc SINE Alu -11 298 1 1879 168 3 0 chr1 233402050 233402336 -48791328 - AluJb SINE Alu -25 287 1 721 198 115 19 chr1 233402560 233402717 -48790947 - AluJo SINE Alu -19 293 122 1965 134 10 10 chr1 233402717 233403023 -48790641 + AluJb SINE Alu 2 307 -5 640 303 188 36 chr1 233403377 233403576 -48790088 + L2 LINE L2 1810 1977 -1337 4114 187 81 27 chr1 233403576 233404394 -48789270 - MER21B LTR ERV1 -1 862 1 640 303 188 36 chr1 233404394 233404672 -48788992 + L2 LINE L2 1977 2360 -954 555 306 114 37 chr1 233404746 233405070 -48788594 + L2 LINE L2 2622 2970 -344 2290 88 0 32 chr1 233405108 233405416 -48788248 + AluY SINE Alu 1 298 -13 3791 119 15 6 chr1 233405416 233405938 -48787726 - MER1A DNA MER1_type 0 527 1 309 314 43 21 chr1 233406035 233406175 -48787489 + L2 LINE L2 3168 3310 -3 1911 139 20 3 chr1 233406178 233406473 -48787191 - AluSx SINE Alu -11 301 2 2010 129 10 6 chr1 233406777 233407088 -48786576 - AluSx SINE Alu 0 312 1 352 198 167 56 chr1 233407352 233407414 -48786250 + MER103 DNA DNA 11 65 -101 1567 83 10 0 chr1 233407414 233407619 -48786045 - AluSp SINE Alu 0 313 107 352 198 167 56 chr1 233407619 233407682 -48785982 + MER103 DNA DNA 65 150 -16 506 149 0 0 chr1 233458355 233458429 -48735235 + MLT1B LTR MaLR 44 117 -273 1233 81 0 12 chr1 233458429 233458601 -48735063 + AluY SINE Alu 142 311 0 1333 179 17 63 chr1 233458615 233458916 -48734748 + MLT1B LTR MaLR 104 390 0 344 272 118 83 chr1 233459072 233459480 -48734184 - L1 LINE L1 -2742 3404 2983 2181 85 20 7 chr1 233459955 233460260 -48733404 + AluSc SINE Alu 1 309 0 351 364 8 8 chr1 233460363 233460492 -48733172 - L2 LINE L2 0 3313 3185 406 245 81 79 chr1 233460551 233460652 -48733012 + MLT1J LTR MaLR 1 69 -381 2063 84 39 0 chr1 233460652 233460938 -48732726 + AluSp SINE Alu 1 297 -16 406 245 81 79 chr1 233460938 233461040 -48732624 + MLT1J LTR MaLR 69 169 -281 865 258 27 98 chr1 233461074 233461261 -48732403 + MLT1J LTR MaLR 152 302 -209 2036 124 3 13 chr1 233461261 233461576 -48732088 + AluSx SINE Alu 1 312 0 865 258 27 98 chr1 233461576 233461757 -48731907 + MLT1J LTR MaLR 302 494 -17 2060 114 7 13 chr1 233462040 233462347 -48731317 - AluSx SINE Alu -7 305 1 2103 103 3 3 chr1 233462853 233463145 -48730519 - AluSg SINE Alu -18 292 1 21 71 0 0 chr1 233463289 233463331 -48730333 + AT_rich Low_complexity Low_complexity 1 42 0 363 190 16 124 chr1 233463488 233463609 -48730055 + MLT1F1 LTR MaLR 1 101 -441 2071 92 34 0 chr1 233463644 233463937 -48729727 - AluSq SINE Alu -10 303 1 1866 165 185 13 chr1 233463938 233464332 -48729332 + MLT1F1 LTR MaLR 98 559 -8 2033 93 7 4 chr1 233464382 233464689 -48728975 - AluSx SINE Alu 0 308 1 242 350 105 47 chr1 233464995 233465272 -48728392 + L2 LINE L2 3021 3313 0 200 184 0 0 chr1 233465280 233465318 -48728346 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 510 256 50 0 chr1 233465333 233465454 -48728210 + MIR3 SINE MIR 81 207 -1 1693 242 78 11 chr1 233465500 233466041 -48727623 + L1ME1 LINE L1 3112 3688 -2458 2043 104 0 49 chr1 233466041 233466188 -48727476 + AluSx SINE Alu 1 127 -185 1932 84 31 0 chr1 233466188 233466449 -48727215 + AluSp SINE Alu 37 305 -8 2043 104 0 49 chr1 233466449 233466609 -48727055 + AluSx SINE Alu 127 293 -19 919 111 0 22 chr1 233466715 233466850 -48726814 - FLAM_C SINE Alu -1 132 1 2323 83 7 0 chr1 233466861 233467161 -48726503 - AluSx SINE Alu -10 302 1 644 217 17 56 chr1 233467162 233467342 -48726322 + L1ME1 LINE L1 4195 4367 -1779 570 244 136 42 chr1 233467375 233467510 -48726154 + MER6 DNA MER2_type 305 426 -439 2292 78 0 7 chr1 233467510 233467819 -48725845 - AluY SINE Alu -4 307 1 570 244 136 42 chr1 233467819 233467882 -48725782 + MER6 DNA MER2_type 426 482 -383 1851 147 3 0 chr1 233467882 233468167 -48725497 - AluSx SINE Alu -26 286 1 570 244 136 42 chr1 233468167 233468230 -48725434 + MER6 DNA MER2_type 482 538 -327 1895 140 3 0 chr1 233468230 233468515 -48725149 - AluSx SINE Alu -26 286 1 570 244 136 42 chr1 233468515 233468545 -48725119 + MER6 DNA MER2_type 538 564 -301 1644 142 44 18 chr1 233468545 233468820 -48724844 - AluJo SINE Alu -30 282 1 570 244 136 42 chr1 233468820 233468886 -48724778 + MER6 DNA MER2_type 564 699 -166 640 105 11 0 chr1 233468903 233468998 -48724666 - MLT2B3 LTR ERVL -456 98 3 2302 66 3 13 chr1 233469020 233469325 -48724339 - AluSp SINE Alu -11 302 1 2751 200 30 13 chr1 233469325 233469955 -48723709 + L1ME1 LINE L1 4535 5175 -971 945 178 11 0 chr1 233469961 233470135 -48723529 + AluJo SINE Alu 119 294 -18 2262 93 3 0 chr1 233470154 233470456 -48723208 + AluSx SINE Alu 8 310 -2 2288 196 61 110 chr1 233470477 233470589 -48723075 + L1ME1 LINE L1 5202 5318 -848 1975 122 0 21 chr1 233470589 233470897 -48722767 - AluSx SINE Alu 0 302 1 2288 196 61 110 chr1 233470897 233470988 -48722676 + L1ME1 LINE L1 5318 5412 -754 2260 40 0 4 chr1 233470988 233471262 -48722402 + L1PA4 LINE L1 5883 6155 0 2288 196 61 110 chr1 233471262 233471363 -48722301 + L1ME1 LINE L1 5412 5516 -650 1754 158 0 0 chr1 233471363 233471648 -48722016 + AluJo SINE Alu 1 285 -27 1789 91 22 40 chr1 233471648 233471826 -48721838 + L1PA10 LINE L1 5881 6054 -114 2104 115 0 3 chr1 233471826 233472122 -48721542 + AluSg SINE Alu 1 295 -15 1789 91 22 40 chr1 233472122 233472217 -48721447 + L1PA10 LINE L1 6054 6149 -19 225 0 0 0 chr1 233472217 233472242 -48721422 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 2288 196 61 110 chr1 233472242 233472428 -48721236 + L1ME1 LINE L1 5514 5708 -458 1939 132 0 35 chr1 233472428 233472747 -48720917 - AluJb SINE Alu -4 308 1 2288 196 61 110 chr1 233472747 233472846 -48720818 + L1ME1 LINE L1 5708 5810 -356 2082 108 0 7 chr1 233472846 233473142 -48720522 - AluSx SINE Alu -18 294 1 2288 196 61 110 chr1 233473142 233473577 -48720087 + L1ME1 LINE L1 5810 6133 -33 304 207 40 121 chr1 233473466 233473578 -48720086 + L1MA10 LINE L1 6175 6270 -64 * 1473 184 45 0 chr1 233473578 233473697 -48719967 + AluJo SINE Alu 1 113 -199 207 0 0 0 chr1 233473697 233473720 -48719944 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1473 184 45 0 chr1 233473720 233473888 -48719776 + AluJo SINE Alu 113 301 -11 304 207 40 121 chr1 233473888 233473949 -48719715 + L1MA10 LINE L1 6270 6334 0 2438 74 0 3 chr1 233474033 233474344 -48719320 - AluY SINE Alu 0 311 2 2039 123 0 7 chr1 233474345 233474646 -48719018 - AluSx SINE Alu -13 299 1 323 304 18 82 chr1 233476237 233476408 -48717256 + MIR SINE MIR 58 217 -45 409 264 182 20 chr1 233476623 233476762 -48716902 - MER63A DNA MER1_type -1478 210 44 989 74 28 11 chr1 233476762 233476938 -48716726 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 320 351 86 0 chr1 233477612 233477763 -48715901 + MIR3 SINE MIR 30 193 -15 1744 153 6 75 chr1 233477846 233478016 -48715648 + MLT1A2 LTR MaLR 1 181 -324 2163 141 3 0 chr1 233478016 233478321 -48715343 + AluSx SINE Alu 1 306 -6 1744 153 6 75 chr1 233478321 233478531 -48715133 + MLT1A2 LTR MaLR 181 484 -21 651 284 27 22 chr1 233478586 233478667 -48714997 + MIR SINE MIR 17 96 -166 2475 107 39 14 chr1 233478667 233479022 -48714642 + THE1B LTR MaLR 1 364 0 651 284 27 22 chr1 233479022 233479162 -48714502 + MIR SINE MIR 96 239 -23 188 67 33 0 chr1 233480328 233480358 -48713306 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 51 26 0 13 chr1 233480713 233480733 -48712931 + AT_rich Low_complexity Low_complexity 1 20 -55 2253 114 0 0 chr1 233480733 233481032 -48712632 - AluSg SINE Alu -11 299 1 51 26 0 13 chr1 233481032 233481087 -48712577 + AT_rich Low_complexity Low_complexity 20 75 0 2244 138 44 60 chr1 233481285 233481364 -48712300 - MSTA LTR MaLR 0 428 349 2321 75 0 0 chr1 233481364 233481667 -48711997 - AluSc SINE Alu 0 303 1 2244 138 44 60 chr1 233481667 233482021 -48711643 - MSTA LTR MaLR -79 349 1 395 325 108 0 chr1 233482417 233482583 -48711081 - MIR3 SINE MIR -6 202 19 2168 133 3 16 chr1 233482590 233482907 -48710757 - AluSq SINE Alu 0 313 1 2390 115 0 3 chr1 233482926 233483240 -48710424 - AluSq SINE Alu 0 313 1 183 42 0 0 chr1 233484605 233484629 -48709035 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 2440 110 0 0 chr1 233484638 233484948 -48708716 - AluSg SINE Alu 0 310 1 249 33 0 0 chr1 233485285 233485315 -48708349 + (A)n Simple_repeat Simple_repeat 1 30 0 2212 124 0 0 chr1 233485323 233485614 -48708050 - AluSx SINE Alu -21 291 1 273 100 0 0 chr1 233485697 233485737 -48707927 - MLT1G LTR MaLR -13 577 538 1318 163 0 0 chr1 233485751 233486026 -48707638 + AluSg/x SINE Alu 95 369 0 1498 192 78 53 chr1 233486029 233486103 -48707561 + MLT1D LTR MaLR 82 153 -352 2197 100 10 13 chr1 233486103 233486412 -48707252 - AluSx SINE Alu -4 308 1 1498 192 78 53 chr1 233486412 233486749 -48706915 + MLT1D LTR MaLR 153 503 -2 240 330 146 13 chr1 233486761 233487000 -48706664 - L2 LINE L2 -896 2418 2148 348 24 0 0 chr1 233488277 233488318 -48705346 + (TC)n Simple_repeat Simple_repeat 2 42 0 328 264 0 66 chr1 233489300 233489406 -48704258 + L1ME3A LINE L1 5495 5593 -528 2002 125 0 79 chr1 233489406 233489735 -48703929 - AluJb SINE Alu -9 303 1 2074 134 0 0 chr1 233489744 233490048 -48703616 - AluSx SINE Alu 0 304 1 2310 98 7 3 chr1 233490245 233490552 -48703112 + AluY SINE Alu 1 308 -3 251 277 43 14 chr1 233490819 233490960 -48702704 + A-rich Low_complexity Low_complexity 1 145 0 2257 109 0 0 chr1 233491666 233491978 -48701686 + AluSp SINE Alu 1 312 0 311 265 95 74 chr1 233492555 233492744 -48700920 + L1MCa LINE L1 2232 2424 -4002 1261 167 126 63 chr1 233493050 233493368 -48700296 + MER46C DNA MER2_type 1 338 0 393 167 191 8 chr1 233493380 233493506 -48700158 + L1ME3A LINE L1 5749 5897 -273 625 310 132 47 chr1 233494426 233494919 -48698745 - L2 LINE L2 -19 3253 2804 2591 183 20 28 chr1 233494919 233495235 -48698429 - MLT1D LTR MaLR 0 505 193 2007 92 89 7 chr1 233495235 233495506 -48698158 - AluSq SINE Alu -20 293 1 2591 183 20 28 chr1 233495506 233495698 -48697966 - MLT1D LTR MaLR -312 193 1 625 310 132 47 chr1 233495698 233496054 -48697610 - L2 LINE L2 -468 2804 2480 884 172 120 62 chr1 233496054 233496140 -48697524 + MER58A DNA MER1_type 4 84 -2336 216 86 0 0 chr1 233496140 233496175 -48697489 + (TTAG)n Simple_repeat Simple_repeat 2 36 0 1752 178 7 21 chr1 233496176 233496462 -48697202 - AluJo SINE Alu -30 282 1 884 172 120 62 chr1 233496462 233496582 -48697082 + MER58A DNA MER1_type 83 224 0 625 310 132 47 chr1 233496582 233496612 -48697052 - L2 LINE L2 -792 2480 2211 506 129 94 0 chr1 233496612 233496697 -48696967 - MLT1E1 LTR MaLR -531 123 31 1799 139 4 0 chr1 233496939 233497205 -48696459 - AluSx SINE Alu 0 312 46 22 35 0 0 chr1 233497329 233497358 -48696306 + AT_rich Low_complexity Low_complexity 1 29 0 1893 159 21 0 chr1 233497403 233497693 -48695971 + AluJo SINE Alu 10 305 -7 340 309 0 53 chr1 233497704 233497742 -48695922 + L1MCa LINE L1 1973 2011 -4415 2140 125 3 0 chr1 233497742 233498037 -48695627 + AluSx SINE Alu 1 296 -16 340 309 0 53 chr1 233498037 233498150 -48695514 + L1MCa LINE L1 2011 2116 -4310 874 146 35 29 chr1 233498419 233498590 -48695074 - MER105 DNA DNA -5 199 28 186 43 0 0 chr1 233498936 233498959 -48694705 + (A)n Simple_repeat Simple_repeat 1 23 0 2366 85 0 7 chr1 233498959 233499266 -48694398 + AluY SINE Alu 1 305 -6 349 298 108 43 chr1 233499539 233499585 -48694079 + L2 LINE L2 1971 2013 -1301 2022 171 165 40 chr1 233499585 233499654 -48694010 - MLT1F1 LTR MaLR 0 567 508 2182 98 0 14 chr1 233499654 233499987 -48693677 + AluSx SINE Alu 1 329 0 2022 171 165 40 chr1 233499987 233500292 -48693372 - MLT1F1 LTR MaLR -59 508 111 2340 107 0 0 chr1 233500292 233500592 -48693072 - AluSx SINE Alu -12 300 1 2022 171 165 40 chr1 233500592 233500717 -48692947 - MLT1F1 LTR MaLR -456 111 3 349 298 108 43 chr1 233500717 233500928 -48692736 + L2 LINE L2 2013 2245 -1069 2021 205 11 93 chr1 233500945 233501065 -48692599 + MLT1E3 LTR MaLR 102 230 -394 2080 152 43 79 chr1 233501065 233501308 -48692356 - MSTB LTR MaLR 0 426 205 1747 160 9 47 chr1 233501308 233501626 -48692038 - AluJo SINE Alu 0 312 7 2080 152 43 79 chr1 233501626 233501824 -48691840 - MSTB LTR MaLR -221 205 1 2021 205 11 93 chr1 233501824 233502273 -48691391 + MLT1E3 LTR MaLR 230 624 0 1129 85 50 45 chr1 233502636 233502688 -48690976 + LTR29 LTR ERV1 1 51 -571 2854 85 3 11 chr1 233502688 233503066 -48690598 - THE1C LTR MaLR 0 375 1 1129 85 50 45 chr1 233503066 233503212 -48690452 + LTR29 LTR ERV1 51 200 -422 1038 150 97 19 chr1 233503222 233503490 -48690174 + LTR29 LTR ERV1 317 642 -11 1971 159 72 28 chr1 233503609 233503962 -48689702 - MER21B LTR ERV1 0 863 490 2364 109 0 0 chr1 233503962 233504266 -48689398 - AluSx SINE Alu -8 304 1 1971 159 72 28 chr1 233504266 233504300 -48689364 - MER21B LTR ERV1 -373 490 459 1279 136 67 12 chr1 233504300 233504660 -48689004 + LTR23 LTR ERV1 1 427 -10 22 0 0 0 chr1 233504660 233504682 -48688982 + AT_rich Low_complexity Low_complexity 1 22 0 865 165 0 0 chr1 233504682 233504815 -48688849 - FLAM_C SINE Alu 0 133 1 1277 106 0 0 chr1 233504835 233504996 -48688668 - AluSq SINE Alu -152 161 1 2476 80 3 0 chr1 233505008 233505310 -48688354 - AluSp SINE Alu -10 303 1 727 176 0 0 chr1 233505780 233505888 -48687776 + FLAM_C SINE Alu 3 110 -33 1058 174 0 0 chr1 233506015 233506176 -48687488 + FRAM SINE Alu 1 154 -22 25 51 0 0 chr1 233506289 233506328 -48687336 + AT_rich Low_complexity Low_complexity 1 39 0 2312 108 0 3 chr1 233506328 233506633 -48687031 - AluSq SINE Alu -9 304 1 2171 132 0 10 chr1 233506633 233506944 -48686720 - AluJb SINE Alu -4 308 1 3299 217 102 122 chr1 233506951 233508455 -48685209 + L2 LINE L2 1082 2556 -758 1318 164 27 0 chr1 233508455 233508675 -48684989 - AluJb SINE Alu -2 310 85 660 270 210 3 chr1 233508689 233509079 -48684585 + L2 LINE L2 2590 3053 -260 493 238 11 92 chr1 233509084 233509228 -48684436 + MLT1F LTR MaLR 1 155 -387 2687 119 38 17 chr1 233509228 233509267 -48684397 - MSTA LTR MaLR 0 428 391 2137 117 10 20 chr1 233509267 233509551 -48684113 + AluSx SINE Alu 1 283 -29 198 0 0 0 chr1 233509551 233509573 -48684091 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 2137 117 10 20 chr1 233509573 233509588 -48684076 + AluSx SINE Alu 283 297 -15 2687 119 38 17 chr1 233509588 233509967 -48683697 - MSTA LTR MaLR -37 391 1 493 238 11 92 chr1 233509967 233510007 -48683657 + MLT1F LTR MaLR 155 170 -372 601 171 154 0 chr1 233510007 233510124 -48683540 + FLAM_C SINE Alu 6 140 -3 850 191 287 44 chr1 233510173 233510387 -48683277 + MLT1F LTR MaLR 179 340 -202 2140 133 7 7 chr1 233510387 233510688 -48682976 + AluSx SINE Alu 1 301 -11 850 191 287 44 chr1 233510688 233510766 -48682898 + MLT1F LTR MaLR 340 542 0 2257 91 11 3 chr1 233510856 233511174 -48682490 - AluSg SINE Alu 0 320 1 680 208 6 69 chr1 233511287 233511365 -48682299 + L2 LINE L2 3152 3215 -98 2274 79 36 0 chr1 233511365 233511645 -48682019 - AluSc SINE Alu -19 290 1 680 208 6 69 chr1 233511645 233511739 -48681925 + L2 LINE L2 3215 3313 0 2190 105 3 0 chr1 233511880 233512174 -48681490 + AluSg SINE Alu 16 310 0 3965 180 35 25 chr1 233512825 233513301 -48680363 - L1MC1 LINE L1 -5 6328 5837 2577 71 0 3 chr1 233513301 233513612 -48680052 - AluY SINE Alu -1 310 1 3965 180 35 25 chr1 233513612 233514034 -48679630 - L1MC1 LINE L1 -496 5837 5421 1997 157 90 25 chr1 233514900 233515301 -48678363 - MSTA LTR MaLR -1 427 1 2073 150 0 45 chr1 233515523 233515571 -48678093 + MLT1A1 LTR MaLR 1 50 -315 884 193 87 0 chr1 233515571 233515732 -48677932 - FAM SINE Alu 0 175 1 2073 150 0 45 chr1 233515732 233516062 -48677602 + MLT1A1 LTR MaLR 50 362 -3 2487 74 3 0 chr1 233516224 233516523 -48677141 - AluSp SINE Alu -13 300 1 1340 213 49 18 chr1 233517674 233518003 -48675661 - MLT1A2 LTR MaLR -4 370 32 339 198 0 58 chr1 233518015 233518101 -48675563 - MLT1A2-int LTR MaLR 0 1735 1655 38 0 0 0 chr1 233518101 233518139 -48675525 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr1 233518159 233518192 -48675472 + AT_rich Low_complexity Low_complexity 1 33 0 2050 107 4 0 chr1 233518192 233518453 -48675211 + AluSc SINE Alu 1 262 -47 1747 104 0 0 chr1 233518573 233518794 -48674870 - AluSq SINE Alu -92 221 1 35 0 0 0 chr1 233518802 233518837 -48674827 + AT_rich Low_complexity Low_complexity 1 35 0 1960 161 30 10 chr1 233518867 233519295 -48674369 - MLT1A2-int LTR MaLR -66 1666 889 251 258 0 0 chr1 233519386 233519448 -48674216 - MLT1A2-int LTR MaLR -994 741 680 1570 198 60 53 chr1 233519527 233519912 -48673752 - MLT1A2-int LTR MaLR -629 742 213 1995 155 0 13 chr1 233519912 233520215 -48673449 - AluSx SINE Alu -13 299 1 1570 198 60 53 chr1 233520215 233520426 -48673238 - MLT1A2-int LTR MaLR -1158 213 5 1920 218 32 45 chr1 233520431 233520469 -48673195 - MLT2B1 LTR ERVL 0 520 483 318 26 0 0 chr1 233520469 233520508 -48673156 + (TG)n Simple_repeat Simple_repeat 1 39 0 1920 218 32 45 chr1 233520508 233520996 -48672668 - MLT2B1 LTR ERVL -37 483 1 568 176 275 0 chr1 233521329 233521460 -48672204 - MER5A DNA MER1_type -14 175 9 192 200 0 60 chr1 233521469 233521519 -48672145 + L3 LINE CR1 1527 1573 -4 1665 109 0 0 chr1 233521637 233521847 -48671817 + AluSq SINE Alu 85 294 -19 2189 100 0 23 chr1 233522182 233522347 -48671317 - AluSc SINE Alu -15 294 138 2231 103 0 3 chr1 233522347 233522661 -48671003 - AluSc SINE Alu 0 309 1 2189 100 0 23 chr1 233522661 233522796 -48670868 - AluSc SINE Alu -171 138 1 432 0 0 0 chr1 233523668 233523716 -48669948 + (CA)n Simple_repeat Simple_repeat 2 49 0 2295 103 0 10 chr1 233524850 233525150 -48668514 + AluSx SINE Alu 6 302 -10 254 337 50 10 chr1 233525824 233525925 -48667739 + L2 LINE L2 3164 3268 -4 220 307 99 30 chr1 233526283 233526384 -48667280 + L2 LINE L2 3148 3255 -17 1203 173 5 5 chr1 233526580 233526782 -48666882 + AluJo SINE Alu 32 233 -79 459 113 0 0 chr1 233526788 233526850 -48666814 - AluS SINE Alu -16 294 233 1335 91 0 11 chr1 233526963 233527138 -48666526 - AluSg SINE Alu -137 173 1 488 171 0 0 chr1 233527138 233527214 -48666450 + AluY SINE Alu 219 294 -17 499 113 12 38 chr1 233527510 233527590 -48666074 + AluJo/FLAM SINE Alu 56 133 -179 2297 109 0 0 chr1 233527592 233527895 -48665769 + AluSg SINE Alu 1 303 -7 473 292 27 62 chr1 233527907 233528167 -48665497 + MLT1J LTR MaLR 258 508 -3 2232 98 16 3 chr1 233528522 233528829 -48664835 + AluSx SINE Alu 1 311 -1 247 250 15 0 chr1 233529132 233529200 -48664464 + HAL1 LINE L1 1427 1495 -1012 769 127 85 0 chr1 233529200 233529318 -48664346 + AluJ SINE Alu 1 128 -174 489 191 38 38 chr1 233529318 233529449 -48664215 - AluSp/q SINE Alu -18 295 165 1804 118 0 0 chr1 233529801 233530038 -48663626 - AluSq SINE Alu -76 237 1 1268 132 0 6 chr1 233530038 233530220 -48663444 + AluJ SINE Alu 117 297 -15 1981 150 3 7 chr1 233530458 233530752 -48662912 - AluJo SINE Alu -19 293 1 430 292 93 38 chr1 233530781 233531017 -48662647 - MLT1I LTR MaLR -16 393 145 233 231 55 22 chr1 233531260 233531351 -48662313 - L1ME LINE L1 -197 5924 5831 1700 169 58 45 chr1 233531705 233532083 -48661581 + LTR37A LTR ERV1 18 400 -26 1698 206 33 11 chr1 233532304 233532668 -48660996 - MLT1A2 LTR MaLR 0 374 3 1162 220 65 9 chr1 233533021 233533357 -48660307 + L2 LINE L2 1109 1463 -1851 389 263 30 0 chr1 233533358 233533457 -48660207 + L2 LINE L2 2015 2116 -1198 1209 188 8 12 chr1 233533462 233533718 -48659946 + MER33 DNA MER1_type 5 259 -65 921 174 39 7 chr1 233533737 233533892 -48659772 - FRAM SINE Alu -23 153 1 1641 193 7 0 chr1 233533919 233534209 -48659455 + AluJo SINE Alu 1 292 -20 2727 228 146 22 chr1 233534283 233535352 -48658312 + L2 LINE L2 2111 3291 -22 1675 206 71 16 chr1 233535353 233535721 -48657943 + MSTD LTR MaLR 1 388 -8 2384 100 0 6 chr1 233536356 233536667 -48656997 - AluSg SINE Alu 0 310 2 651 247 108 40 chr1 233536667 233536918 -48656746 - L2 LINE L2 -12 3301 3034 1967 204 54 53 chr1 233536930 233537587 -48656077 - MER21B LTR ERV1 -3 860 100 379 241 12 49 chr1 233537555 233537690 -48655974 - MER21B LTR ERV1 -400 205 35 * 410 340 57 0 chr1 233537761 233537920 -48655744 - L2 LINE L2 -342 2971 2804 213 286 0 101 chr1 233537997 233538116 -48655548 - L2 LINE L2 -682 2632 2526 1663 197 27 120 chr1 233538186 233538543 -48655121 + MER34B LTR ERV1 1 390 -175 1975 116 49 7 chr1 233538543 233538863 -48654801 - AluSg SINE Alu 0 310 1 1494 186 97 0 chr1 233538871 233539140 -48654524 - AluJo SINE Alu -17 295 1 1663 197 27 120 chr1 233539140 233539396 -48654268 + MER34B LTR ERV1 397 565 0 458 249 122 17 chr1 233539469 233539650 -48654014 - MER31-int LTR ERV1 -3030 1906 1707 557 195 37 61 chr1 233539794 233539958 -48653706 - MER31-int LTR ERV1 -3490 1446 1287 1908 162 0 13 chr1 233539993 233540295 -48653369 + AluJb SINE Alu 1 298 -14 652 236 33 16 chr1 233540299 233540568 -48653096 - MER31-int LTR ERV1 -3636 1300 1061 247 206 22 87 chr1 233540573 233540665 -48652999 - MIR SINE MIR -172 90 5 2242 121 0 3 chr1 233540677 233540983 -48652681 + AluSx SINE Alu 1 305 -7 1958 149 0 0 chr1 233541156 233541481 -48652183 + AluSx SINE Alu 1 325 0 1460 122 19 0 chr1 233541567 233541772 -48651892 + AluSg SINE Alu 3 211 -99 1826 165 30 0 chr1 233542279 233542582 -48651082 - AluJo SINE Alu 0 312 1 24 0 0 0 chr1 233542882 233542906 -48650758 + AT_rich Low_complexity Low_complexity 1 24 0 1351 112 0 0 chr1 233543001 233543180 -48650484 + AluSg/x SINE Alu 120 298 -14 252 245 0 64 chr1 233543489 233543583 -48650081 + MER89-int LTR ERV1 1851 1938 -4863 2447 74 0 0 chr1 233544237 233544534 -48649130 + AluY SINE Alu 1 297 -14 712 341 27 32 chr1 233545272 233545683 -48647981 + MER89-int LTR ERV1 3126 3534 -3267 567 231 21 7 chr1 233545688 233545831 -48647833 - L1M4 LINE L1 -3317 2829 2685 2037 111 61 0 chr1 233545836 233546116 -48647548 + AluSg SINE Alu 1 297 -13 695 225 14 0 chr1 233546150 233546288 -48647376 + FLAM_C SINE Alu 2 141 -2 257 233 17 17 chr1 233546317 233546377 -48647287 - MER21A LTR ERV1 -190 741 682 * 1033 257 143 67 chr1 233546375 233546884 -48646780 - MER77 LTR ERV1 -6 599 52 1241 247 44 0 chr1 233546911 233547255 -48646409 - L1M4 LINE L1 -3473 2673 2315 435 195 95 12 chr1 233547264 233547384 -48646280 - L1MB7 LINE L1 -8 6166 6053 794 162 0 0 chr1 233547411 233547522 -48646142 - FLAM_C SINE Alu -24 119 9 3749 186 26 62 chr1 233547529 233548282 -48645382 - L1MB7 LINE L1 -123 6061 5283 1582 213 3 0 chr1 233548282 233548587 -48645077 - AluJb SINE Alu -2 310 5 3749 186 26 62 chr1 233548587 233548734 -48644930 - L1MB7 LINE L1 -901 5283 5132 1587 181 3 14 chr1 233548734 233549016 -48644648 - AluJb SINE Alu -20 292 14 3749 186 26 62 chr1 233549016 233549061 -48644603 - L1MB7 LINE L1 -1052 5132 5087 2274 117 0 3 chr1 233549061 233549368 -48644296 - AluSx SINE Alu -4 308 3 3749 186 26 62 chr1 233549368 233549791 -48643873 - L1MB7 LINE L1 -1097 5087 4745 287 130 80 10 chr1 233549835 233549935 -48643729 + (TA)n Simple_repeat Simple_repeat 2 108 0 3093 122 16 0 chr1 233549935 233550362 -48643302 + MER57B LTR ERV1 1 434 0 4551 123 33 3 chr1 233550362 233551020 -48642644 + MER57B-int LTR ERV1 1 678 -6859 1296 68 11 17 chr1 233551017 233551193 -48642471 + MER57B-int LTR ERV1 793 967 -6570 * 481 108 0 0 chr1 233551187 233551252 -48642412 + MER57B-int LTR ERV1 1346 1410 -6127 * 3597 132 41 22 chr1 233551243 233551947 -48641717 + MER57B-int LTR ERV1 632 840 -4377 873 98 158 0 chr1 233551947 233552080 -48641584 + MER57-int LTR ERV1 2476 2629 -4908 * 16973 164 86 73 chr1 233552076 233552655 -48641009 + MER57-int LTR ERV1 2781 3352 -4185 2168 119 3 0 chr1 233552655 233552949 -48640715 + AluSx SINE Alu 2 296 -16 16973 164 86 73 chr1 233552949 233553413 -48640251 + MER57-int LTR ERV1 3352 3809 -3728 2423 82 7 0 chr1 233553413 233553717 -48639947 + AluSg SINE Alu 1 306 -4 2220 117 0 3 chr1 233553723 233554023 -48639641 + AluSq SINE Alu 1 299 -14 16973 164 86 73 chr1 233554023 233554084 -48639580 + MER57-int LTR ERV1 3813 3872 -3665 2235 110 0 13 chr1 233554084 233554384 -48639280 + AluY SINE Alu 1 296 -15 16973 164 86 73 chr1 233554384 233554769 -48638895 + MER57-int LTR ERV1 3872 4251 -3286 2131 137 0 3 chr1 233554769 233555068 -48638596 - AluSx SINE Alu -14 298 1 16973 164 86 73 chr1 233555068 233556373 -48637291 + MER57-int LTR ERV1 4251 5539 -1998 1099 39 0 15 chr1 233556373 233556503 -48637161 - AluY SINE Alu -183 128 1 16973 164 86 73 chr1 233556503 233557661 -48636003 + MER57-int LTR ERV1 5539 6922 -615 2382 196 19 87 chr1 233557661 233558283 -48635381 - L1M4 LINE L1 -3395 3249 2677 2174 129 3 0 chr1 233558283 233558586 -48635078 - AluSq SINE Alu -9 304 1 2382 196 19 87 chr1 233558586 233558652 -48635012 - L1M4 LINE L1 -3967 2677 2608 1293 183 24 48 chr1 233558667 233558847 -48634817 - L1M4 LINE L1 -4652 1994 1822 2283 100 10 0 chr1 233558847 233559146 -48634518 - AluSp SINE Alu -11 302 1 1293 183 24 48 chr1 233559146 233559254 -48634410 - L1M4 LINE L1 -4824 1822 1713 252 0 0 0 chr1 233559265 233559293 -48634371 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1297 193 49 34 chr1 233559299 233559564 -48634100 - AluJo SINE Alu -31 281 13 3628 217 41 64 chr1 233559576 233559912 -48633752 - L1M4 LINE L1 -4831 1711 1369 579 235 0 17 chr1 233559912 233560054 -48633610 - FLAM_A SINE Alu 0 140 1 3628 217 41 64 chr1 233560054 233560162 -48633502 - L1M4 LINE L1 -5173 1369 1260 1195 139 25 42 chr1 233560162 233560399 -48633265 - L1MA8 LINE L1 -4 6287 6055 3628 217 41 64 chr1 233560399 233561369 -48632295 - L1M4 LINE L1 -5282 1260 14 339 244 12 0 chr1 233561384 233561466 -48632198 - L1MEc LINE L1 -3958 2605 2523 330 246 2 42 chr1 233561558 233561672 -48631992 - L1MEc LINE L1 -3900 2484 2398 2271 107 10 0 chr1 233561672 233561980 -48631684 - AluSp SINE Alu -2 311 1 1181 218 51 88 chr1 233561995 233562429 -48631235 - L1MEc LINE L1 -4122 2441 2029 1974 120 21 14 chr1 233562429 233562720 -48630944 - AluSg SINE Alu -17 293 1 1181 218 51 88 chr1 233562720 233562818 -48630846 - L1MEc LINE L1 -4534 2029 1929 2058 127 24 0 chr1 233562823 233563114 -48630550 - AluSg SINE Alu -12 298 1 2053 142 0 19 chr1 233563174 233563490 -48630174 - AluJb SINE Alu 0 312 3 2806 29 0 0 chr1 233563740 233564050 -48629614 + AluY SINE Alu 1 310 -1 2367 84 0 3 chr1 233564060 233564358 -48629306 + AluSc SINE Alu 1 297 -12 200 94 31 0 chr1 233565305 233565337 -48628327 + CT-rich Low_complexity Low_complexity 1 33 0 2497 155 73 79 chr1 233566040 233566632 -48627032 + LTR4 LTR ERV1 1 588 0 3524 269 84 40 chr1 233567158 233567548 -48626116 - L1MEc LINE L1 -4676 1887 1516 2067 149 0 3 chr1 233567548 233567844 -48625820 - AluSx SINE Alu -17 295 1 3524 269 84 40 chr1 233567844 233568083 -48625581 - L1MEc LINE L1 -5047 1516 1289 1687 199 43 51 chr1 233568083 233568405 -48625259 + MLT1B LTR MaLR 1 321 -69 2048 161 0 0 chr1 233568405 233568710 -48624954 + AluJb SINE Alu 1 305 -7 1687 199 43 51 chr1 233568710 233568778 -48624886 + MLT1B LTR MaLR 321 388 -2 3524 269 84 40 chr1 233568778 233568904 -48624760 - L1MEc LINE L1 -5274 1289 1170 1507 199 34 24 chr1 233568904 233569196 -48624468 - AluJo SINE Alu -17 295 1 3524 269 84 40 chr1 233569196 233569434 -48624230 - L1MEc LINE L1 -5393 1170 944 207 0 0 0 chr1 233569434 233569457 -48624207 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 819 172 0 0 chr1 233569461 233569577 -48624087 - FLAM_C SINE Alu -17 116 1 3524 269 84 40 chr1 233569577 233570190 -48623474 - L1MEc LINE L1 -5621 942 202 1563 157 0 101 chr1 233570254 233570599 -48623065 - AluJo SINE Alu -2 310 1 277 341 132 0 chr1 233570687 233570816 -48622848 - HERVL LTR ERVL -3178 2476 2331 314 349 27 7 chr1 233570816 233570962 -48622702 + L1M4 LINE L1 2726 2874 -3272 239 267 67 29 chr1 233570966 233571071 -48622593 + L1MC4a LINE L1 5830 5938 -1870 26 0 0 0 chr1 233571271 233571297 -48622367 + AT_rich Low_complexity Low_complexity 1 26 0 2209 85 0 14 chr1 233571301 233571596 -48622068 - AluSg SINE Alu -19 291 1 458 288 18 32 chr1 233571614 233571833 -48621831 + L1M4 LINE L1 2870 3085 -3061 2048 146 0 9 chr1 233571969 233572284 -48621380 + AluJb SINE Alu 1 312 0 2407 87 0 3 chr1 233572524 233572836 -48620828 - AluSq SINE Alu -2 311 1 1997 218 34 79 chr1 233573018 233573586 -48620078 + MLT1F LTR MaLR 1 542 0 646 282 68 95 chr1 233573591 233573782 -48619882 + L1MEd LINE L1 489 684 -5447 2362 103 0 0 chr1 233573782 233574093 -48619571 + AluSx SINE Alu 1 311 -1 646 282 68 95 chr1 233574093 233574787 -48618877 + L1MEd LINE L1 684 1223 -4908 444 268 180 48 chr1 233574787 233575059 -48618605 + L1MEd LINE L1 3077 3384 -2745 2207 123 0 0 chr1 233575123 233575416 -48618248 - AluSx SINE Alu -19 293 1 22 35 0 0 chr1 233575433 233575462 -48618202 + AT_rich Low_complexity Low_complexity 1 29 0 1716 172 26 3 chr1 233575473 233575776 -48617888 - AluJb SINE Alu -2 310 1 518 234 24 1 chr1 233575856 233575999 -48617665 - L1ME3A LINE L1 -5 6165 6018 2315 119 0 0 chr1 233577624 233577927 -48615737 + AluSx SINE Alu 1 303 -9 3584 183 31 18 chr1 233578233 233578527 -48615137 + Charlie1a DNA MER1_type 10 298 -2463 2590 46 3 3 chr1 233578527 233578829 -48614835 - AluY SINE Alu -9 302 1 3584 183 31 18 chr1 233578829 233579633 -48614031 + Charlie1a DNA MER1_type 298 1191 -264 318 332 14 5 chr1 233579633 233579779 -48613885 + HAL1b LINE L1 534 649 -699 370 293 72 30 chr1 233580090 233580257 -48613407 - MIR SINE MIR -62 146 17 298 377 52 7 chr1 233580362 233580516 -48613148 - L3 LINE CR1 -125 1452 1292 257 118 118 59 chr1 233580582 233580633 -48613031 + MER69 DNA AcHobo 1 54 -2472 705 179 50 0 chr1 233580745 233580885 -48612779 + MER69 DNA AcHobo 2380 2526 0 226 246 35 0 chr1 233580935 233580992 -48612672 + MLT1J LTR MaLR 409 467 -44 1984 150 3 3 chr1 233581013 233581313 -48612351 - AluJb SINE Alu -12 300 1 234 228 235 31 chr1 233581902 233582064 -48611600 + L2 LINE L2 2262 2456 -858 1699 172 3 39 chr1 233582095 233582229 -48611435 + AluJo SINE Alu 1 138 -174 2236 116 0 3 chr1 233582229 233582530 -48611134 + AluSx SINE Alu 1 300 -12 1699 172 3 39 chr1 233582530 233582703 -48610961 + AluJo SINE Alu 138 297 -15 297 256 78 100 chr1 233583191 233583371 -48610293 - LTR67 LTR ERVL -296 261 86 693 162 31 21 chr1 233583559 233583890 -48609774 + CT-rich Low_complexity Low_complexity 1 334 0 224 71 0 0 chr1 233583893 233583921 -48609743 + (TCCCC)n Simple_repeat Simple_repeat 2 29 0 1707 190 0 14 chr1 233583921 233584216 -48609448 - AluJb SINE Alu -21 291 1 2277 123 0 0 chr1 233584221 233584530 -48609134 - AluSx SINE Alu -2 310 2 2223 108 0 7 chr1 233584799 233585094 -48608570 + AluSc SINE Alu 1 293 -16 748 178 6 6 chr1 233585200 233585379 -48608285 + L1M4 LINE L1 5236 5414 -753 233 143 0 0 chr1 233585379 233585421 -48608243 + Alu SINE Alu 91 132 -1 675 192 0 8 chr1 233586846 233586966 -48606698 + FLAM_C SINE Alu 1 119 -24 25 65 0 0 chr1 233587083 233587129 -48606535 + AT_rich Low_complexity Low_complexity 1 46 0 2032 134 27 0 chr1 233587823 233587941 -48605723 + AluSc SINE Alu 1 114 -195 192 40 0 0 chr1 233587941 233587966 -48605698 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr1 233587965 233587994 -48605670 + (CA)n Simple_repeat Simple_repeat 2 30 0 2032 134 27 0 chr1 233587966 233588173 -48605491 + AluSc SINE Alu 114 306 -3 213 121 0 0 chr1 233588173 233588206 -48605458 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 2186 123 3 3 chr1 233588414 233588715 -48604949 - AluJb SINE Alu -11 301 1 462 288 50 85 chr1 233589186 233589467 -48604197 + LTR67 LTR ERVL 23 293 -264 400 246 240 18 chr1 233589608 233589779 -48603885 + L2 LINE L2 2421 2629 -685 4892 137 29 97 chr1 233589800 233590001 -48603663 - L1MA7 LINE L1 -4 6287 6074 2194 95 3 3 chr1 233590001 233590284 -48603380 - AluSq SINE Alu -24 289 7 4892 137 29 97 chr1 233590284 233590483 -48603181 - L1MA7 LINE L1 -217 6074 5863 2267 105 3 0 chr1 233590483 233590779 -48602885 - AluSx SINE Alu -15 297 1 4892 137 29 97 chr1 233590779 233591644 -48602020 - L1MA7 LINE L1 -428 5863 5110 1499 249 36 46 chr1 233591644 233592089 -48601575 + L2 LINE L2 2619 3067 -246 2137 78 0 0 chr1 233592089 233592347 -48601317 + AluSg SINE Alu 1 258 -52 211 0 57 29 chr1 233592347 233592382 -48601282 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1499 249 36 46 chr1 233592382 233592629 -48601035 + L2 LINE L2 3065 3313 0 345 127 0 114 chr1 233592635 233592714 -48600950 + LTR67 LTR ERVL 484 553 -4 246 154 19 19 chr1 233592756 233592808 -48600856 + MIR SINE MIR 86 137 -71 2269 123 0 0 chr1 233592860 233593160 -48600504 - AluSx SINE Alu -12 300 1 6128 131 71 67 chr1 233593215 233593454 -48600210 + Tigger3b DNA MER2_type 10 247 -2781 1227 226 8 0 chr1 233593454 233593706 -48599958 - L1PB4 LINE L1 0 6156 5903 6128 131 71 67 chr1 233593706 233594194 -48599470 + Tigger3b DNA MER2_type 247 732 -2296 1870 148 21 3 chr1 233594194 233594478 -48599186 + AluJb SINE Alu 1 289 -23 6128 131 71 67 chr1 233594478 233594589 -48599075 + Tigger3b DNA MER2_type 732 841 -2187 2147 124 0 25 chr1 233594589 233594904 -48598760 - AluSx SINE Alu -5 307 1 6128 131 71 67 chr1 233594904 233594960 -48598704 + Tigger3b DNA MER2_type 841 895 -2133 218 81 27 0 chr1 233594960 233594997 -48598667 + (CTCA)n Simple_repeat Simple_repeat 1 38 0 6128 131 71 67 chr1 233594997 233595317 -48598347 + Tigger3b DNA MER2_type 895 1231 0 2048 144 3 3 chr1 233595408 233595706 -48597958 - AluSx SINE Alu -14 298 1 2589 68 3 0 chr1 233596200 233596510 -48597154 - AluY SINE Alu 0 311 1 234 0 0 0 chr1 233596510 233596536 -48597128 + (T)n Simple_repeat Simple_repeat 1 26 0 1281 176 36 0 chr1 233596552 233596644 -48597020 - AluJo SINE Alu -82 230 143 2317 113 0 0 chr1 233596644 233596946 -48596718 - AluSx SINE Alu -10 302 1 1281 176 36 0 chr1 233596946 233597075 -48596589 - AluJo SINE Alu -169 143 1 1094 167 0 0 chr1 233597098 233597266 -48596398 + AluJb SINE Alu 129 296 -16 316 289 108 90 chr1 233597290 233597517 -48596147 - L3 LINE CR1 -657 920 698 2293 114 0 3 chr1 233597517 233597824 -48595840 + AluSx SINE Alu 1 306 -6 316 289 108 90 chr1 233597824 233597840 -48595824 - L3 LINE CR1 -879 698 684 434 100 0 38 chr1 233597840 233597920 -48595744 + L1PA13 LINE L1 6087 6163 0 316 289 108 90 chr1 233597920 233598018 -48595646 - L3 LINE CR1 -893 684 572 250 238 119 12 chr1 233598114 233598198 -48595466 + MIR3 SINE MIR 67 159 -49 206 200 44 0 chr1 233598393 233598438 -48595226 - L2 LINE L2 -4 3309 3263 1905 237 113 33 chr1 233598762 233599373 -48594291 - MLT2F LTR ERVL -3 660 1 2391 80 3 0 chr1 233599423 233599712 -48593952 + AluSp SINE Alu 1 290 -23 300 266 50 101 chr1 233599918 233600009 -48593655 + L1M4 LINE L1 4487 4581 -1565 2079 146 7 3 chr1 233600009 233600311 -48593353 + AluSx SINE Alu 3 305 -7 300 266 50 101 chr1 233600311 233600497 -48593167 + L1M4 LINE L1 4581 4750 -1396 21 0 0 0 chr1 233600526 233600547 -48593117 + AT_rich Low_complexity Low_complexity 1 21 0 2033 115 36 30 chr1 233600647 233600951 -48592713 - AluJb SINE Alu -6 306 1 328 246 0 0 chr1 233601001 233601066 -48592598 - HERVL40 LTR ERVL -2886 2644 2580 3959 82 33 25 chr1 233601288 233601898 -48591766 + SVA Other Other 252 866 -520 1575 80 14 25 chr1 233601920 233602196 -48591468 + SVA Other Other 594 866 -520 1333 74 22 37 chr1 233602213 233602676 -48590988 + SVA Other Other 613 866 -520 293 306 34 20 chr1 233602825 233602972 -48590692 + MIR SINE MIR 93 241 -21 416 242 50 0 chr1 233603095 233603194 -48590470 + L1MEc LINE L1 1681 1784 -4612 243 0 0 0 chr1 233603201 233603228 -48590436 + (T)n Simple_repeat Simple_repeat 1 27 0 765 187 0 15 chr1 233603374 233603508 -48590156 - FLAM_C SINE Alu 0 133 2 3455 229 77 79 chr1 233603528 233603624 -48590040 + L1MEc LINE L1 2044 2139 -4076 2237 101 0 0 chr1 233603624 233603900 -48589764 + AluSx SINE Alu 1 276 -36 297 0 0 0 chr1 233603906 233603939 -48589725 + (CA)n Simple_repeat Simple_repeat 2 34 0 3455 229 77 79 chr1 233603939 233604532 -48589132 + L1MEc LINE L1 2144 2737 -3478 861 30 0 0 chr1 233604532 233604633 -48589031 + L1PA3 LINE L1 6055 6155 0 3455 229 77 79 chr1 233604633 233604824 -48588840 + L1MEc LINE L1 2737 2927 -3288 2151 104 37 3 chr1 233604824 233605123 -48588541 + AluSp SINE Alu 1 309 -4 3455 229 77 79 chr1 233605123 233605430 -48588234 + L1MEc LINE L1 2927 3233 -2982 2186 61 50 0 chr1 233605430 233605708 -48587956 + AluY SINE Alu 17 308 -3 3455 229 77 79 chr1 233605708 233606225 -48587439 + L1MEc LINE L1 3233 3717 -2498 497 282 39 22 chr1 233606307 233606481 -48587183 + L1MEc LINE L1 4057 4230 -1985 1036 273 36 24 chr1 233606481 233606814 -48586850 + L1MEc LINE L1 50 386 -6010 1895 197 26 18 chr1 233606843 233606856 -48586808 + LTR37B LTR ERV1 5 16 -452 2233 114 20 0 chr1 233606856 233607162 -48586502 + AluSx SINE Alu 1 312 0 1895 197 26 18 chr1 233607162 233607605 -48586059 + LTR37B LTR ERV1 16 465 -3 4802 136 26 54 chr1 233607862 233609161 -48584503 + pTR5 LTR ERV1 743 2295 -143 2086 105 14 7 chr1 233609349 233609645 -48584019 + AluSc SINE Alu 1 298 -11 228 222 19 0 chr1 233609911 233609965 -48583699 + (TG)n Simple_repeat Simple_repeat 2 56 0 363 122 95 0 chr1 233609993 233610067 -48583597 - MER53 DNA DNA -1 188 108 315 119 83 71 chr1 233610004 233610088 -48583576 + MER53 DNA DNA 24 108 -81 * 2375 91 3 0 chr1 233610108 233610405 -48583259 - AluSp SINE Alu -15 298 1 3154 162 50 5 chr1 233610408 233611012 -48582652 - L1MB2 LINE L1 -1 6170 5540 479 198 78 17 chr1 233611012 233611128 -48582536 + MER77 LTR ERV1 476 598 -7 240 263 38 12 chr1 233611135 233611215 -48582449 + MER21B LTR ERV1 614 695 -168 2367 168 96 89 chr1 233611890 233612210 -48581454 - MER69 DNA AcHobo 0 2526 2210 2047 170 0 0 chr1 233612210 233612522 -48581142 - AluJb SINE Alu 0 312 1 2367 168 96 89 chr1 233612522 233612744 -48580920 - MER69 DNA AcHobo -316 2210 1975 2228 110 3 0 chr1 233612744 233613044 -48580620 + AluSg SINE Alu 1 301 -9 2367 168 96 89 chr1 233613044 233613228 -48580436 - MER69 DNA AcHobo -551 1975 1794 431 183 73 0 chr1 233613228 233613310 -48580354 - AluJb SINE Alu -19 293 206 759 179 102 124 chr1 233613310 233613434 -48580230 - MLT1B LTR MaLR -101 289 164 2375 105 0 0 chr1 233613434 233613747 -48579917 - AluSq SINE Alu 0 313 1 759 179 102 124 chr1 233613747 233613896 -48579768 - MLT1B LTR MaLR -226 164 22 440 100 0 0 chr1 233614037 233614097 -48579567 - AluJ/FLAM SINE Alu -251 61 2 241 321 39 75 chr1 233614100 233614405 -48579259 - L1MEd LINE L1 -5369 750 457 451 227 125 0 chr1 233614711 233614839 -48578825 + HsTC2 DNA Tc2 4 147 -1751 1296 202 51 9 chr1 233614850 233615236 -48578428 + HsTC2 DNA Tc2 1281 1723 -175 1282 149 0 51 chr1 233615246 233615380 -48578284 + AluJo SINE Alu 1 121 -191 2045 130 3 0 chr1 233615380 233615673 -48577991 + AluJb SINE Alu 1 294 -18 1282 149 0 51 chr1 233615673 233615753 -48577911 + AluJo SINE Alu 121 204 -108 395 174 111 83 chr1 233615833 233615977 -48577687 + HsTC2 DNA Tc2 1734 1881 -17 2449 87 0 0 chr1 233616002 233616311 -48577353 - AluY SINE Alu -2 309 1 2124 129 0 0 chr1 233616664 233616958 -48576706 - AluSx SINE Alu -18 294 1 309 227 41 10 chr1 233616999 233617096 -48576568 - L1M4 LINE L1 -3118 3028 2929 802 166 0 28 chr1 233617293 233617438 -48576226 - FLAM_C SINE Alu -2 141 1 2047 72 111 7 chr1 233617530 233617809 -48575855 - AluSc SINE Alu -1 308 1 415 298 79 38 chr1 233617899 233618127 -48575537 - L1M4 LINE L1 -3529 2617 2369 1623 196 0 39 chr1 233618127 233618439 -48575225 - AluJo SINE Alu -12 300 1 415 298 79 38 chr1 233618439 233618552 -48575112 - L1M4 LINE L1 -3777 2369 2262 2318 117 0 3 chr1 233618600 233618907 -48574757 - AluSx SINE Alu -6 306 1 2173 114 0 29 chr1 233618919 233619227 -48574437 - AluSx SINE Alu -13 299 1 2047 160 0 0 chr1 233619251 233619558 -48574106 + AluJb SINE Alu 1 307 -5 2039 228 39 45 chr1 233619740 233620231 -48573433 - MLT1F LTR MaLR -54 488 1 228 163 0 20 chr1 233620505 233620551 -48573113 - MLT2B2 LTR ERVL 0 515 471 13738 130 28 38 chr1 233620551 233621433 -48572231 + Tigger2 DNA MER2_type 1 890 -1828 1960 128 0 64 chr1 233621433 233621762 -48571902 - AluSg SINE Alu -2 308 1 13738 130 28 38 chr1 233621762 233623173 -48570491 + Tigger2 DNA MER2_type 890 2272 -446 2395 103 0 0 chr1 233623173 233623475 -48570189 - AluSx SINE Alu -10 302 1 189 256 0 0 chr1 233623666 233623748 -48569916 + CT-rich Low_complexity Low_complexity 3 84 0 2128 117 3 0 chr1 233624014 233624305 -48569359 - AluSg SINE Alu -2 308 17 1234 276 19 43 chr1 233624370 233624849 -48568815 - L1ME3A LINE L1 -222 5948 5459 1761 171 0 4 chr1 233624849 233625129 -48568535 + AluJo SINE Alu 1 279 -33 240 35 0 0 chr1 233625133 233625162 -48568502 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1234 276 19 43 chr1 233625162 233625176 -48568488 - L1ME3A LINE L1 -714 5456 5443 2339 107 0 0 chr1 233625176 233625476 -48568188 + AluSx SINE Alu 1 300 -12 1234 276 19 43 chr1 233625476 233625789 -48567875 - L1ME3A LINE L1 -727 5443 5160 249 310 31 0 chr1 233625838 233625967 -48567697 - L1ME3A LINE L1 -1070 5076 4944 1978 78 0 4 chr1 233625977 233626221 -48567443 - AluY SINE Alu -15 296 54 6028 17 0 8 chr1 233626369 233627010 -48566654 - SVA Other Other 0 1386 751 466 185 159 1 chr1 233827036 233827093 -48366571 + L1ME LINE L1 5304 5351 -818 2224 74 19 13 chr1 233827093 233827402 -48366262 + L1PA3 LINE L1 5845 6155 0 466 185 159 1 chr1 233827402 233827503 -48366161 + L1ME LINE L1 5351 5486 -683 1787 158 0 0 chr1 233827503 233827788 -48365876 + AluJo SINE Alu 1 285 -27 1747 91 31 45 chr1 233827788 233827966 -48365698 + L1PA10 LINE L1 5881 6055 -113 2129 115 0 3 chr1 233827966 233828262 -48365402 + AluSg SINE Alu 1 295 -15 1747 91 31 45 chr1 233828262 233828369 -48365295 + L1PA10 LINE L1 6055 6162 -6 1885 74 81 3 chr1 233828758 233829042 -48364622 + AluY SINE Alu 1 306 -5 2154 105 0 10 chr1 233829081 233829386 -48364278 - AluSx SINE Alu -10 302 1 180 0 0 0 chr1 233830645 233830665 -48362999 + (T)n Simple_repeat Simple_repeat 1 20 0 989 173 130 4 chr1 233831413 233831644 -48362020 - MIR SINE MIR 0 262 3 1976 115 0 11 chr1 233833595 233833916 -48359748 + AluSx SINE Alu 1 318 0 520 286 81 26 chr1 233833916 233834189 -48359475 - L1ME4a LINE L1 -19 6102 5815 943 286 160 12 chr1 233834338 233834901 -48358763 + L2 LINE L2 2686 3313 0 2012 104 0 11 chr1 233835682 233835969 -48357695 - AluSp SINE Alu -29 284 1 264 174 17 47 chr1 233836854 233837026 -48356638 + (TG)n Simple_repeat Simple_repeat 1 167 0 429 227 118 18 chr1 233837601 233837711 -48355953 - MER91B DNA MER1_type -66 124 4 232 196 0 20 chr1 233839172 233839223 -48354441 + L2 LINE L2 3261 3310 -3 1691 161 26 20 chr1 233840324 233840629 -48353035 - AluJb SINE Alu -4 308 2 2339 83 7 0 chr1 233841463 233841763 -48351901 - AluSx SINE Alu -10 302 1 617 222 21 54 chr1 233841764 233841974 -48351690 + L1M4 LINE L1 4195 4404 -1742 688 185 30 0 chr1 233841977 233842112 -48351552 + MER6 DNA MER2_type 305 443 -422 2121 100 3 10 chr1 233842112 233842423 -48351241 - AluY SINE Alu -2 309 1 1889 155 3 0 chr1 233842474 233842771 -48350893 - AluSx SINE Alu -14 298 1 1880 149 7 0 chr1 233842822 233843118 -48350546 - AluSx SINE Alu -14 298 1 1667 150 42 17 chr1 233843136 233843423 -48350241 - AluJo SINE Alu -18 294 1 387 62 31 0 chr1 233843424 233843489 -48350175 + MER6 DNA MER2_type 633 699 -166 601 105 11 0 chr1 233843506 233843601 -48350063 - MLT2B3 LTR ERVL -456 98 3 2320 66 3 13 chr1 233843623 233843928 -48349736 - AluSp SINE Alu -11 302 1 2618 200 30 13 chr1 233843928 233844558 -48349106 + L1M4 LINE L1 4535 5175 -971 974 178 11 0 chr1 233844564 233844738 -48348926 + AluJo SINE Alu 119 294 -18 2284 93 3 0 chr1 233844757 233845059 -48348605 + AluSx SINE Alu 8 310 -2 439 218 9 0 chr1 233845065 233845175 -48348489 + L1M4 LINE L1 5187 5297 -849 336 24 0 0 chr1 233846146 233846187 -48347477 + (GA)n Simple_repeat Simple_repeat 2 42 0 234 341 118 14 chr1 233847468 233847688 -48345976 + L2 LINE L2 2148 2390 -924 1556 209 65 41 chr1 233847719 233848056 -48345608 - MLT1D LTR MaLR -2 503 153 2287 93 0 10 chr1 233848056 233848367 -48345297 + AluSx SINE Alu 1 308 -4 1556 209 65 41 chr1 233848367 233848441 -48345223 - MLT1D LTR MaLR -352 153 82 621 72 0 0 chr1 233848444 233848527 -48345137 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 631 267 75 0 chr1 233848531 233848677 -48344987 - FAM SINE Alu -18 157 1 284 148 0 37 chr1 233848677 233848731 -48344933 - AluSq/x SINE Alu -166 136 85 265 100 0 0 chr1 233848733 233848773 -48344891 + MLT1G LTR MaLR 538 577 -13 1255 136 0 0 chr1 233848856 233849033 -48344631 + AluSx SINE Alu 1 177 -135 852 134 8 22 chr1 233850365 233850499 -48343165 + FLAM_C SINE Alu 1 132 -1 473 259 42 28 chr1 233850594 233850737 -48342927 - MIR SINE MIR -16 246 102 297 258 81 24 chr1 233850820 233850944 -48342720 - MIR SINE MIR -3 259 129 433 89 0 0 chr1 233850944 233851000 -48342664 + AluJb SINE Alu 50 105 -207 350 298 141 31 chr1 233851701 233851892 -48341772 - MIR SINE MIR -37 225 14 183 261 0 0 chr1 233852132 233852178 -48341486 - MIR SINE MIR -115 147 102 219 319 123 63 chr1 233852513 233852864 -48340800 + L3 LINE CR1 1018 1389 -188 1913 150 3 13 chr1 233856425 233856739 -48336925 - AluJb SINE Alu -1 311 1 3332 160 48 23 chr1 233856831 233857483 -48336181 - L1MB2 LINE L1 -62 6109 5438 2519 33 0 10 chr1 233857483 233857837 -48335827 - AluY SINE Alu 0 311 1 3332 160 48 23 chr1 233857837 233857876 -48335788 - L1MB2 LINE L1 -733 5438 5401 299 240 27 0 chr1 233858095 233858170 -48335494 + MIR SINE MIR 71 147 -61 898 158 38 24 chr1 233859268 233859458 -48334206 + L1PA15 LINE L1 5983 6171 0 595 243 81 7 chr1 233860141 233860289 -48333375 - MIR SINE MIR -81 181 23 571 242 45 76 chr1 233860368 233860566 -48333098 + MER91A DNA MER1_type 2 193 -3 1264 133 51 0 chr1 233860773 233860969 -48332695 - Tigger3(Golem) DNA MER2_type -2 3027 2822 225 104 0 52 chr1 233861456 233861484 -48332180 + (TA)n Simple_repeat Simple_repeat 2 30 -41 1684 176 7 7 chr1 233861484 233861773 -48331891 + AluJo SINE Alu 1 289 -23 225 104 0 52 chr1 233861773 233861799 -48331865 + (TA)n Simple_repeat Simple_repeat 30 54 -17 2082 116 0 10 chr1 233861799 233862102 -48331562 + AluSq SINE Alu 2 301 -12 225 104 0 52 chr1 233862102 233862120 -48331544 + (TA)n Simple_repeat Simple_repeat 54 71 0 247 284 59 20 chr1 233862994 233863096 -48330568 + MIR3 SINE MIR 56 161 -47 216 195 24 0 chr1 233863175 233863216 -48330448 - MER5B DNA MER1_type -132 46 5 423 317 8 8 chr1 233863496 233863619 -48330045 - MIR3 SINE MIR -71 137 15 271 202 112 45 chr1 233866093 233866182 -48327482 - MIR3 SINE MIR -29 179 85 657 164 73 9 chr1 233867231 233867341 -48326323 + FLAM_C SINE Alu 2 118 -25 2161 88 3 29 chr1 233867355 233867661 -48326003 + AluSg SINE Alu 1 298 -12 199 348 70 9 chr1 233867667 233867782 -48325882 - MIR SINE MIR -121 141 20 200 322 39 69 chr1 233867805 233868038 -48325626 - L2 LINE L2 -95 3177 2952 443 218 23 0 chr1 233868451 233868538 -48325126 - MLT1A1 LTR MaLR 0 365 277 959 184 0 46 chr1 233868542 233868597 -48325067 + MLT1A1-int LTR MaLR 1549 1605 -130 1648 151 9 44 chr1 233868597 233868914 -48324750 - AluJo SINE Alu -6 306 1 959 184 0 46 chr1 233868914 233869054 -48324610 + MLT1A1-int LTR MaLR 1605 1735 0 1784 197 49 11 chr1 233869054 233869404 -48324260 + MLT1A1 LTR MaLR 1 363 -2 1744 98 8 0 chr1 233869535 233869769 -48323895 - AluSx SINE Alu -75 237 2 183 274 145 0 chr1 233870925 233870987 -48322677 + MIR3 SINE MIR 132 202 -6 2285 138 44 60 chr1 233871383 233871737 -48321927 + MSTA LTR MaLR 1 349 -79 2207 75 0 0 chr1 233871737 233872040 -48321624 + AluSc SINE Alu 1 303 0 2285 138 44 60 chr1 233872040 233872119 -48321545 + MSTA LTR MaLR 349 428 0 51 26 0 13 chr1 233872317 233872372 -48321292 + AT_rich Low_complexity Low_complexity 1 56 -19 2134 114 0 0 chr1 233872372 233872671 -48320993 + AluSg SINE Alu 1 299 -11 51 26 0 13 chr1 233872671 233872691 -48320973 + AT_rich Low_complexity Low_complexity 56 75 0 188 67 33 0 chr1 233873046 233873076 -48320588 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 632 299 29 20 chr1 233874219 233874381 -48319283 - MIR SINE MIR 0 262 96 2479 107 39 14 chr1 233874381 233874736 -48318928 - THE1B LTR MaLR 0 364 1 632 299 29 20 chr1 233874736 233874817 -48318847 - MIR SINE MIR -166 96 17 943 183 7 34 chr1 233874872 233875060 -48318604 - MLT1A2 LTR MaLR -21 484 173 1147 161 10 0 chr1 233875080 233875273 -48318391 - AluSg/x SINE Alu -4 306 112 429 20 0 0 chr1 233875554 233875604 -48318060 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 2426 81 0 0 chr1 233875792 233876100 -48317564 - AluSg SINE Alu -2 308 1 1747 164 3 13 chr1 233876104 233876403 -48317261 - AluJb SINE Alu -16 296 1 275 341 16 16 chr1 233876769 233876898 -48316766 + MIR3 SINE MIR 15 143 -65 233 263 18 0 chr1 233877336 233877393 -48316271 - MIR3 SINE MIR -18 190 133 264 256 156 11 chr1 233878110 233878200 -48315464 - MIR3 SINE MIR -15 193 91 217 258 65 0 chr1 233879278 233879340 -48314324 - MER5A DNA MER1_type 0 189 124 569 139 0 0 chr1 233879340 233879419 -48314245 + AluS SINE Alu 2 80 -233 266 282 6 45 chr1 233879782 233879944 -48313720 + G-rich Low_complexity Low_complexity 1 176 -69 183 80 0 0 chr1 233879944 233879969 -48313695 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 266 282 6 45 chr1 233879969 233880037 -48313627 + G-rich Low_complexity Low_complexity 176 245 0 560 201 56 151 chr1 233880082 233880420 -48313244 - MER110A LTR ERV1 -92 376 71 885 284 146 24 chr1 233880448 233880718 -48312946 - L2 LINE L2 -687 2627 2391 3754 130 27 32 chr1 233880718 233880800 -48312864 + LTR26E LTR ERV1 2 83 -539 1925 131 7 26 chr1 233880800 233881106 -48312558 + AluJb SINE Alu 7 306 -6 3754 130 27 32 chr1 233881106 233881647 -48312017 + LTR26E LTR ERV1 83 622 0 885 284 146 24 chr1 233881647 233881965 -48311699 - L2 LINE L2 -923 2391 1967 24 32 0 0 chr1 233882119 233882150 -48311514 + AT_rich Low_complexity Low_complexity 1 31 0 2263 70 10 3 chr1 233882457 233882756 -48310908 - AluSp SINE Alu -11 302 2 649 282 105 25 chr1 233883037 233883314 -48310350 - L2 LINE L2 -10 3262 2964 292 333 68 68 chr1 233883414 233883674 -48309990 + L2 LINE L2 2974 3236 -36 2282 96 3 0 chr1 233883674 233883975 -48309689 - AluSx SINE Alu -10 302 1 292 333 68 68 chr1 233883975 233884008 -48309656 + L2 LINE L2 3235 3267 -5 2143 55 14 14 chr1 233884149 233884442 -48309222 - AluY SINE Alu -17 294 2 232 309 0 12 chr1 233884764 233884848 -48308816 + CT-rich Low_complexity Low_complexity 1 83 0 314 224 13 13 chr1 233887479 233887555 -48306109 - L2 LINE L2 -12 3260 3185 306 253 135 90 chr1 233887591 233887769 -48305895 + MIR SINE MIR 76 261 -1 2098 73 36 20 chr1 233888044 233888345 -48305319 + AluY SINE Alu 3 308 -3 2079 106 3 3 chr1 233888657 233888950 -48304714 - AluSc SINE Alu -16 293 1 253 296 122 35 chr1 233888971 233889143 -48304521 + MIR SINE MIR 2 188 -74 185 319 14 0 chr1 233889193 233889262 -48304402 + MIR SINE MIR 81 150 -112 2316 72 7 3 chr1 233889264 233889570 -48304094 - AluY SINE Alu -4 307 1 220 374 9 10 chr1 233889879 233889996 -48303668 + MIR SINE MIR 33 149 -59 225 0 0 0 chr1 233890592 233890617 -48303047 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 2190 195 66 93 chr1 233890649 233890799 -48302865 + L1ME1 LINE L1 5467 5620 -546 1968 136 0 34 chr1 233890799 233891122 -48302542 - AluJb SINE Alu 0 312 1 2190 195 66 93 chr1 233891122 233891221 -48302443 + L1ME1 LINE L1 5620 5720 -446 2104 108 0 7 chr1 233891221 233891517 -48302147 - AluSx SINE Alu -18 294 1 2190 195 66 93 chr1 233891517 233891952 -48301712 + L1ME1 LINE L1 5720 6133 -33 1484 188 45 0 chr1 233891953 233892072 -48301592 + AluJo SINE Alu 1 113 -199 207 0 0 0 chr1 233892072 233892095 -48301569 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1484 188 45 0 chr1 233892095 233892262 -48301402 + AluJo SINE Alu 113 300 -12 2433 77 0 3 chr1 233892410 233892721 -48300943 - AluY SINE Alu 0 311 2 2061 123 0 7 chr1 233892722 233893023 -48300641 - AluSx SINE Alu -13 299 1 320 304 18 82 chr1 233894614 233894785 -48298879 + MIR SINE MIR 58 217 -45 435 264 182 20 chr1 233895000 233895139 -48298525 - MER63A DNA MER1_type -1478 210 44 989 74 28 11 chr1 233895139 233895315 -48298349 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 320 355 84 0 chr1 233895989 233896144 -48297520 + MIR3 SINE MIR 30 197 -11 644 119 0 37 chr1 233896223 233896332 -48297332 + MLT1A2 LTR MaLR 1 105 -269 2123 103 3 3 chr1 233896879 233897171 -48296493 - AluSg SINE Alu -18 292 1 21 71 0 0 chr1 233897315 233897357 -48296307 + AT_rich Low_complexity Low_complexity 1 42 0 353 190 16 124 chr1 233897514 233897635 -48296029 + MLT1F1 LTR MaLR 1 101 -441 2089 92 34 0 chr1 233897670 233897963 -48295701 - AluSq SINE Alu -10 303 1 1765 165 185 13 chr1 233897964 233898358 -48295306 + MLT1F1 LTR MaLR 98 559 -8 2049 93 7 4 chr1 233898408 233898715 -48294949 - AluSx SINE Alu 0 308 1 218 361 101 43 chr1 233899021 233899298 -48294366 + L2 LINE L2 3021 3313 0 200 184 0 0 chr1 233899306 233899344 -48294320 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 478 256 50 0 chr1 233899359 233899480 -48294184 + MIR3 SINE MIR 81 207 -1 1352 247 28 14 chr1 233899520 233900054 -48293610 + L1M4 LINE L1 3106 3671 -2475 2061 104 0 49 chr1 233900067 233900214 -48293450 + AluSx SINE Alu 1 127 -185 1943 84 31 0 chr1 233900214 233900475 -48293189 + AluSp SINE Alu 37 305 -8 2061 104 0 49 chr1 233900475 233900635 -48293029 + AluSx SINE Alu 127 293 -19 687 80 27 36 chr1 233900741 233900853 -48292811 - FLAM_C SINE Alu -11 132 22 308 290 20 129 chr1 233900972 233901154 -48292510 + MIR SINE MIR 29 177 -85 1572 197 3 3 chr1 233901154 233901453 -48292211 + AluSx SINE Alu 13 311 -1 308 290 20 129 chr1 233901453 233901525 -48292139 + MIR SINE MIR 177 255 -7 189 0 0 0 chr1 233901594 233901615 -48292049 + (T)n Simple_repeat Simple_repeat 1 21 0 345 281 7 44 chr1 233901634 233901769 -48291895 - MER5B DNA MER1_type -23 155 26 1688 152 20 20 chr1 233901796 233902093 -48291571 + AluJo SINE Alu 1 297 -15 509 355 5 0 chr1 233902958 233903144 -48290520 + MIR SINE MIR 20 206 -56 249 314 12 0 chr1 233903277 233903363 -48290301 + L2 LINE L2 2967 3053 -219 300 188 0 0 chr1 233904579 233904643 -48289021 + (TG)n Simple_repeat Simple_repeat 2 65 0 2247 98 0 0 chr1 233904654 233904949 -48288715 - AluSx SINE Alu -17 295 1 289 257 228 7 chr1 233904958 233905094 -48288570 + Charlie8 DNA MER1_type 70 235 -2182 653 239 0 8 chr1 233905264 233905394 -48288270 + FLAM_A SINE Alu 1 129 -13 772 250 17 6 chr1 233905747 233905927 -48287737 + MIR SINE MIR 59 240 -22 562 232 86 0 chr1 233906025 233906176 -48287488 + MER5A DNA MER1_type 26 189 0 903 163 98 0 chr1 233906464 233906648 -48287016 - MER2 DNA MER2_type 0 345 144 491 164 0 0 chr1 233906648 233906721 -48286943 + AluJo SINE Alu 6 78 -234 271 48 0 48 chr1 233906722 233906764 -48286900 - AluJo/FLAM SINE Alu -172 130 91 1067 150 35 30 chr1 233906766 233906966 -48286698 + AluJo SINE Alu 87 287 -25 2280 83 3 0 chr1 233906977 233907309 -48286355 + AluSp SINE Alu 1 313 0 755 163 16 0 chr1 233907310 233907439 -48286225 - MER2 DNA MER2_type -213 132 2 2010 177 9 14 chr1 233907444 233907794 -48285870 - MER7A DNA MER2_type 0 346 1 1511 215 39 0 chr1 233908926 233909238 -48284426 + MER33 DNA MER1_type 1 324 0 431 286 52 13 chr1 233910017 233910171 -48283493 + MIR SINE MIR 32 191 -71 571 176 28 42 chr1 233910228 233910370 -48283294 + MIR SINE MIR 13 152 -110 1909 112 52 3 chr1 233910520 233910806 -48282858 + AluSq SINE Alu 2 301 -12 417 239 0 11 chr1 233910836 233910924 -48282740 + L2 LINE L2 3180 3266 -6 237 288 98 64 chr1 233911073 233911309 -48282355 - L3b LINE CR1 -202 1381 1138 212 271 0 34 chr1 233911523 233911582 -48282082 - MIR3 SINE MIR -49 159 103 2082 117 0 0 chr1 233911631 233911914 -48281750 + AluSx SINE Alu 14 296 -16 341 267 50 87 chr1 233915000 233915161 -48278503 + MIR3 SINE MIR 33 187 -21 220 244 77 13 chr1 233915947 233916025 -48277639 + MIR SINE MIR 64 146 -116 378 0 0 0 chr1 233918229 233918271 -48275393 + (CA)n Simple_repeat Simple_repeat 2 43 0 311 226 145 57 chr1 233920225 233920384 -48273280 - MIR3 SINE MIR 0 208 36 1981 131 0 7 chr1 233921077 233921367 -48272297 - AluSx SINE Alu -24 288 1 190 343 57 0 chr1 233921380 233921450 -48272214 + L2 LINE L2 3138 3211 -61 2431 63 0 0 chr1 233922204 233922503 -48271161 + AluY SINE Alu 1 299 -12 238 330 0 48 chr1 233922504 233922607 -48271057 - MIR3 SINE MIR -27 181 84 376 316 29 7 chr1 233922664 233922800 -48270864 - MIR SINE MIR -122 140 2 277 163 0 0 chr1 233924192 233924235 -48269429 - MER45 DNA AcHobo 0 1581 1539 1746 133 72 17 chr1 233924250 233924543 -48269121 + AluSx SINE Alu 3 311 -1 282 209 19 9 chr1 233924543 233924648 -48269016 + GA-rich Low_complexity Low_complexity 1 106 0 551 144 183 0 chr1 233924836 233924940 -48268724 - MER45 DNA AcHobo -55 123 1 297 75 0 0 chr1 233924980 233925020 -48268644 + (TG)n Simple_repeat Simple_repeat 1 40 0 279 54 0 0 chr1 233925020 233925057 -48268607 + (GA)n Simple_repeat Simple_repeat 2 38 0 1834 180 61 3 chr1 233925086 233925431 -48268233 + MLT1A1 LTR MaLR 1 365 0 614 126 50 67 chr1 233925983 233926102 -48267562 + MLT1B LTR MaLR 1 117 -273 1242 81 0 12 chr1 233926102 233926274 -48267390 + AluY SINE Alu 142 311 0 1254 188 16 62 chr1 233926280 233926589 -48267075 + MLT1B LTR MaLR 96 390 0 411 306 63 82 chr1 233926706 233927171 -48266493 - L1 LINE L1 -1316 3498 874 2200 85 20 7 chr1 233927628 233927933 -48265731 + AluSc SINE Alu 1 309 0 321 364 8 8 chr1 233928036 233928165 -48265499 - L2 LINE L2 0 3313 3185 389 272 52 37 chr1 233928224 233928325 -48265339 + MLT1J LTR MaLR 1 70 -380 2076 84 39 0 chr1 233928325 233928611 -48265053 + AluSp SINE Alu 1 297 -16 389 272 52 37 chr1 233928611 233928713 -48264951 + MLT1J LTR MaLR 70 169 -281 615 286 6 12 chr1 233928747 233928908 -48264756 + MLT1J LTR MaLR 152 311 -200 1903 138 3 13 chr1 233928934 233929239 -48264425 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr1 233929835 233929864 -48263800 + GC_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr1 233930117 233930172 -48263492 + GC_rich Low_complexity Low_complexity 1 55 0 37 0 0 0 chr1 233930205 233930242 -48263422 + GC_rich Low_complexity Low_complexity 1 37 0 465 163 250 35 chr1 233931333 233931428 -48262236 + MER3 DNA MER1_type 1 74 -135 2334 75 3 14 chr1 233931428 233931723 -48261941 - AluSp SINE Alu -19 294 3 465 163 250 35 chr1 233931723 233931799 -48261865 + MER3 DNA MER1_type 74 209 0 319 220 220 0 chr1 233932401 233932506 -48261158 + MIR3 SINE MIR 74 202 -6 209 278 111 0 chr1 233933559 233933667 -48259997 + MIR SINE MIR 78 197 -65 741 206 94 0 chr1 233933687 233933847 -48259817 - MER5B DNA MER1_type -1 177 3 229 49 0 73 chr1 233934084 233934125 -48259539 + (G)n Simple_repeat Simple_repeat 1 38 0 264 30 0 0 chr1 233934524 233934557 -48259107 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 230 338 25 10 chr1 233935634 233935766 -48257898 - MIR SINE MIR -86 122 29 959 170 6 0 chr1 233936609 233936774 -48256890 - FRAM SINE Alu 0 166 1 415 203 15 98 chr1 233936958 233937091 -48256573 + L2 LINE L2 3159 3280 -33 655 205 10 90 chr1 233937260 233937460 -48256204 + MER3 DNA MER1_type 3 186 -23 303 326 111 0 chr1 233940650 233940785 -48252879 - L2 LINE L2 0 3272 3123 187 191 0 43 chr1 233941158 233941205 -48252459 - MIR SINE MIR -65 143 99 192 350 0 0 chr1 233941618 233941678 -48251986 - MIR SINE MIR -92 170 111 399 209 16 93 chr1 233941997 233942126 -48251538 + MIR SINE MIR 70 188 -74 267 220 198 22 chr1 233942508 233942599 -48251065 + MIR SINE MIR 100 206 -56 1898 166 13 0 chr1 233942766 233943067 -48250597 - AluJb SINE Alu -7 305 1 2421 88 3 0 chr1 233943163 233943471 -48250193 - AluSp SINE Alu -4 309 1 590 290 65 29 chr1 233943511 233943756 -48249908 - MIR SINE MIR -7 255 2 2237 97 21 3 chr1 233943799 233944088 -48249576 - AluSx SINE Alu -18 294 1 207 246 0 46 chr1 233944204 233944269 -48249395 + MIR SINE MIR 58 119 -89 2183 114 14 3 chr1 233945063 233945353 -48248311 + AluSq SINE Alu 1 293 -20 3416 134 13 4 chr1 233945356 233945885 -48247779 + MER87 LTR ERV1 7 540 -1 1198 159 20 73 chr1 233945885 233946060 -48247604 + MER49-int LTR ERV1 3733 3916 -2415 1773 144 42 25 chr1 233946060 233946344 -48247320 + AluJo SINE Alu 10 298 -14 1198 159 20 73 chr1 233946344 233946598 -48247066 + MER49-int LTR ERV1 3916 4162 -2169 496 107 84 75 chr1 233946600 233946652 -48247012 + MER49-int LTR ERV1 4607 4657 -1407 2455 88 0 0 chr1 233946652 233946947 -48246717 - AluY SINE Alu -16 295 1 496 107 84 75 chr1 233946947 233947039 -48246625 + MER49-int LTR ERV1 4657 4888 -1176 395 215 104 86 chr1 233947030 233947193 -48246471 + MER49-int LTR ERV1 5985 6150 -608 * 1537 189 8 6 chr1 233947173 233947482 -48246182 + MER49-int LTR ERV1 6443 7096 -3 4842 134 3 11 chr1 233947483 233948237 -48245427 + MER49 LTR ERV1 1 748 -175 408 178 22 22 chr1 233948249 233948339 -48245325 + LOR1-int LTR ERV1 1997 2086 -5036 786 283 50 70 chr1 233948427 233949016 -48244648 + LOR1-int LTR ERV1 4965 7670 -450 2851 23 0 0 chr1 233949399 233949706 -48243958 - AluYb8 SINE Alu -11 307 1 1903 146 34 6 chr1 233950239 233950560 -48243104 + MER87 LTR ERV1 1 330 -211 810 232 53 5 chr1 233950662 233950852 -48242812 + MER87 LTR ERV1 343 541 0 225 328 26 52 chr1 233951150 233951266 -48242398 + L2 LINE L2 2983 3095 -177 591 299 10 20 chr1 233951400 233951597 -48242067 + MIR3 SINE MIR 14 208 0 496 377 95 19 chr1 233951894 233952305 -48241359 - L2 LINE L2 -1 3271 2830 788 269 58 18 chr1 233952316 233952539 -48241125 - MIR SINE MIR -3 259 28 185 375 0 0 chr1 233952561 233952633 -48241031 - L2 LINE L2 -498 2816 2745 2440 89 0 0 chr1 233952697 233953001 -48240663 + AluSq SINE Alu 1 304 -9 482 308 194 27 chr1 233953002 233953782 -48239882 - L2 LINE L2 -586 2728 1819 1423 179 72 11 chr1 233953782 233954061 -48239603 + MLT1A1 LTR MaLR 1 296 -69 791 218 10 24 chr1 233954162 233954368 -48239296 + MLT1A1 LTR MaLR 163 365 0 198 368 16 8 chr1 233954368 233954493 -48239171 - L2 LINE L2 -1491 1823 1698 928 105 13 13 chr1 233954521 233954673 -48238991 + LTR15 LTR ERV1 336 487 -6 1125 297 133 31 chr1 233954688 233955272 -48238392 - L2 LINE L2 -1611 1703 1180 1903 147 3 11 chr1 233955272 233955591 -48238073 + AluJo SINE Alu 1 317 0 1125 297 133 31 chr1 233955591 233956044 -48237620 - L2 LINE L2 -2134 1180 559 250 297 93 0 chr1 233956094 233956212 -48237452 - MIR SINE MIR -83 179 51 337 278 104 7 chr1 233956558 233956702 -48236962 - MIR SINE MIR 0 262 105 274 308 169 26 chr1 233957420 233957722 -48235942 + L3 LINE CR1 1144 1488 -89 1515 206 13 17 chr1 233958556 233958857 -48234807 + AluJo SINE Alu 1 300 -12 254 29 29 0 chr1 233959576 233959611 -48234053 + (TG)n Simple_repeat Simple_repeat 2 37 0 2776 151 8 6 chr1 233959716 233960200 -48233464 - MER31A LTR ERV1 0 485 1 246 219 0 31 chr1 233960233 233960297 -48233367 + CT-rich Low_complexity Low_complexity 2 63 0 212 119 0 24 chr1 233960303 233960345 -48233319 + (TTC)n Simple_repeat Simple_repeat 3 43 0 186 216 0 0 chr1 233961132 233961169 -48232495 + L2 LINE L2 3219 3255 -17 2334 118 0 6 chr1 233962722 233963036 -48230628 - AluSx SINE Alu 0 312 1 196 303 45 0 chr1 233963774 233963840 -48229824 - L2 LINE L2 0 3272 3204 227 275 87 0 chr1 233963962 233964031 -48229633 + MIR SINE MIR 34 108 -154 711 138 15 23 chr1 233964031 233964046 -48229618 - FLAM_C SINE Alu -169 133 119 312 70 0 0 chr1 233964046 233964089 -48229575 + (TG)n Simple_repeat Simple_repeat 2 44 0 711 138 15 23 chr1 233964089 233964203 -48229461 - FLAM_C SINE Alu -183 119 5 1116 170 158 19 chr1 233964224 233964636 -48229028 - AluJo SINE Alu 0 449 1 1022 178 0 0 chr1 233964642 233964799 -48228865 - AluJb SINE Alu -12 300 144 316 355 32 19 chr1 233964811 233964966 -48228698 + MIR SINE MIR 106 262 0 327 296 78 14 chr1 233965180 233965322 -48228342 + MIR SINE MIR 76 226 -36 218 97 0 0 chr1 233966063 233966094 -48227570 + MIR SINE MIR 115 145 -63 277 333 30 0 chr1 233966300 233966399 -48227265 - MIR3 SINE MIR -38 170 69 331 333 25 25 chr1 233966497 233966617 -48227047 - MIR SINE MIR -65 143 40 2376 212 55 42 chr1 233967985 233968548 -48225116 - L1MB3 LINE L1 -7 6176 5599 1529 126 4 22 chr1 233968548 233968728 -48224936 - AluJb SINE Alu 0 312 135 2051 132 0 7 chr1 233968728 233969037 -48224627 - AluSg SINE Alu 0 310 1 1529 126 4 22 chr1 233969037 233969086 -48224578 - AluJb SINE Alu -177 135 87 2376 212 55 42 chr1 233969086 233969266 -48224398 - L1MB3 LINE L1 -584 5599 5423 337 266 57 73 chr1 233969585 233969732 -48223932 + L1ME4a LINE L1 5773 5921 -200 2588 73 3 6 chr1 233969732 233970046 -48223618 + AluSp SINE Alu 1 313 0 337 266 57 73 chr1 233970046 233970169 -48223495 + L1ME4a LINE L1 5921 6045 -76 1929 140 25 35 chr1 233970169 233970484 -48223180 - AluJb SINE Alu 0 312 1 337 266 57 73 chr1 233970484 233970518 -48223146 + L1ME4a LINE L1 6045 6078 -43 2253 82 24 7 chr1 233970518 233970809 -48222855 + AluSx SINE Alu 1 296 -16 222 37 0 0 chr1 233970811 233970838 -48222826 + (TTG)n Simple_repeat Simple_repeat 1 27 0 337 266 57 73 chr1 233970838 233970882 -48222782 + L1ME4a LINE L1 6079 6120 -1 394 314 144 11 chr1 233971458 233971646 -48222018 + MIR SINE MIR 2 214 -48 210 244 22 0 chr1 233971672 233971717 -48221947 + MIR SINE MIR 15 60 -202 1981 124 57 10 chr1 233971736 233972034 -48221630 - AluJb SINE Alu 0 312 1 699 206 0 7 chr1 233972039 233972180 -48221484 + MIR SINE MIR 119 258 -4 1499 184 32 7 chr1 233972184 233972467 -48221197 + AluJo SINE Alu 4 293 -19 350 275 19 69 chr1 233972590 233972703 -48220961 - L2 LINE L2 -1192 2122 2005 1850 171 165 40 chr1 233972703 233972828 -48220836 + MLT1F1 LTR MaLR 3 111 -456 2350 107 0 0 chr1 233972828 233973128 -48220536 + AluSx SINE Alu 1 300 -12 1850 171 165 40 chr1 233973128 233973433 -48220231 + MLT1F1 LTR MaLR 111 508 -59 2199 98 0 14 chr1 233973433 233973766 -48219898 - AluSx SINE Alu 0 329 1 1850 171 165 40 chr1 233973766 233973835 -48219829 + MLT1F1 LTR MaLR 508 567 0 350 275 19 69 chr1 233973835 233973881 -48219783 - L2 LINE L2 -1309 2005 1971 2376 85 0 7 chr1 233974154 233974461 -48219203 - AluY SINE Alu -6 305 1 186 43 0 0 chr1 233974461 233974484 -48219180 + (T)n Simple_repeat Simple_repeat 1 23 0 883 146 35 29 chr1 233974830 233975001 -48218663 + MER105 DNA DNA 28 199 -5 349 309 0 53 chr1 233975270 233975383 -48218281 - L1MCa LINE L1 -4310 2116 2011 2152 125 3 0 chr1 233975383 233975678 -48217986 - AluSx SINE Alu -16 296 1 349 309 0 53 chr1 233975678 233975716 -48217948 - L1MCa LINE L1 -4415 2011 1973 1895 159 21 0 chr1 233975727 233976017 -48217647 - AluJo SINE Alu -7 305 10 22 35 0 0 chr1 233976062 233976091 -48217573 + AT_rich Low_complexity Low_complexity 1 29 0 2176 135 3 0 chr1 233976099 233976410 -48217254 + AluSx SINE Alu 1 312 0 516 137 94 0 chr1 233976642 233976737 -48216927 + MLT1E1 LTR MaLR 14 123 -494 547 322 127 41 chr1 233976737 233976767 -48216897 + L2 LINE L2 2211 2237 -1035 811 172 120 62 chr1 233976767 233976887 -48216777 - MER58A DNA MER1_type -2196 224 112 1753 178 7 21 chr1 233976887 233977173 -48216491 + AluJo SINE Alu 1 282 -30 216 86 0 0 chr1 233977174 233977209 -48216455 + (CTAA)n Simple_repeat Simple_repeat 2 36 0 811 172 120 62 chr1 233977209 233977295 -48216369 - MER58A DNA MER1_type -2307 113 4 547 322 127 41 chr1 233977295 233977651 -48216013 + L2 LINE L2 2237 2561 -711 2427 183 20 28 chr1 233977651 233977843 -48215821 + MLT1D LTR MaLR 1 193 -312 2015 92 89 7 chr1 233977843 233978114 -48215550 + AluSq SINE Alu 1 293 -20 2427 183 20 28 chr1 233978114 233978430 -48215234 + MLT1D LTR MaLR 193 505 0 547 322 127 41 chr1 233978430 233978923 -48214741 + L2 LINE L2 2561 3253 -19 393 167 191 8 chr1 233979842 233979968 -48213696 - L1ME3A LINE L1 -273 5897 5749 1230 167 126 63 chr1 233979980 233980298 -48213366 - MER46C DNA MER2_type 0 338 1 314 265 95 74 chr1 233980604 233980793 -48212871 - L1MCa LINE L1 -4002 2424 2232 2256 109 0 0 chr1 233981370 233981682 -48211982 - AluSp SINE Alu 0 312 1 251 277 43 14 chr1 233982387 233982528 -48211136 + T-rich Low_complexity Low_complexity 1 145 0 2310 98 7 3 chr1 233982795 233983102 -48210562 - AluY SINE Alu -3 308 1 2075 134 0 0 chr1 233983299 233983603 -48210061 + AluSx SINE Alu 1 304 0 2002 125 0 79 chr1 233983612 233983941 -48209723 + AluJb SINE Alu 1 303 -9 328 264 0 66 chr1 233983941 233984047 -48209617 - L1ME3A LINE L1 -528 5593 5495 270 243 29 52 chr1 233984337 233984510 -48209154 + (TTTA)n Simple_repeat Simple_repeat 2 170 0 1508 127 13 34 chr1 233984674 233984852 -48208812 - AluSg/x SINE Alu 0 312 132 429 36 0 0 chr1 233984852 233984907 -48208757 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2643 7 0 0 chr1 233984907 233985189 -48208475 - AluYa5 SINE Alu -29 282 1 1508 127 13 34 chr1 233985189 233985245 -48208419 - AluSg/x SINE Alu -178 134 82 239 301 92 46 chr1 233985250 233985444 -48208220 - HAL1 LINE L1 -2 2505 2294 2196 97 30 7 chr1 233985444 233985743 -48207921 - AluSx SINE Alu -6 306 1 239 301 92 46 chr1 233985743 233985810 -48207854 - HAL1 LINE L1 -213 2294 2232 1721 169 0 51 chr1 233986525 233986838 -48206826 - AluJb SINE Alu -12 300 4 352 319 65 0 chr1 233986951 233987120 -48206544 - HAL1 LINE L1 -718 1789 1610 473 258 47 23 chr1 233987329 233987457 -48206207 + L2 LINE L2 3160 3290 -23 24 0 0 0 chr1 233987623 233987647 -48206017 + AT_rich Low_complexity Low_complexity 1 24 0 2000 131 10 7 chr1 233987647 233987937 -48205727 - AluJb SINE Alu -17 295 5 2440 110 0 0 chr1 233987972 233988282 -48205382 + AluSg SINE Alu 1 310 0 183 42 0 0 chr1 233988291 233988315 -48205349 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 2390 115 0 3 chr1 233989680 233989994 -48203670 + AluSq SINE Alu 1 313 0 2153 131 3 16 chr1 233990013 233990326 -48203338 + AluSq SINE Alu 1 309 -4 258 257 51 10 chr1 233990331 233990453 -48203211 + MIR SINE MIR 15 143 -65 701 154 18 0 chr1 234040471 234040581 -48153083 - FAM SINE Alu -73 112 1 405 165 12 141 chr1 234040584 234040688 -48152976 + Charlie1 DNA MER1_type 2614 2689 -72 1696 188 7 14 chr1 234040688 234040844 -48152820 - AluJb SINE Alu -21 291 136 1476 130 9 22 chr1 234040844 234041074 -48152590 - AluSg/x SINE Alu -1 309 83 1696 188 7 14 chr1 234041074 234041210 -48152454 - AluJb SINE Alu -176 136 1 405 165 12 141 chr1 234041210 234041275 -48152389 + Charlie1 DNA MER1_type 2689 2761 0 292 214 0 0 chr1 234041278 234041334 -48152330 + L2 LINE L2 3257 3312 -1 892 174 93 12 chr1 234041556 234041717 -48151947 + AluJo SINE Alu 1 174 -138 1486 150 116 35 chr1 234041820 234041852 -48151812 - Charlie1b DNA MER1_type -2386 375 347 1537 140 0 0 chr1 234041852 234042066 -48151598 - AluJb SINE Alu -15 297 84 1486 150 116 35 chr1 234042066 234042379 -48151285 - Charlie1b DNA MER1_type -2414 347 2 394 245 90 26 chr1 234042499 234042654 -48151010 - L2 LINE L2 -193 3079 2915 2237 98 3 7 chr1 234043090 234043386 -48150278 + AluSc SINE Alu 2 296 -13 936 120 23 8 chr1 234043893 234044026 -48149638 + AluJb SINE Alu 1 135 -177 2479 61 0 3 chr1 234044026 234044320 -48149344 + AluSc SINE Alu 1 293 -16 456 174 35 0 chr1 234046891 234046977 -48146687 - L2 LINE L2 0 3313 3225 580 272 34 34 chr1 234047936 234048142 -48145522 - MIR SINE MIR -48 214 9 341 305 47 16 chr1 234048752 234048880 -48144784 - MIR SINE MIR -116 146 15 335 327 39 0 chr1 234048893 234048997 -48144667 + MIR3 SINE MIR 74 181 -27 386 191 43 0 chr1 234049334 234049449 -48144215 + GA-rich Low_complexity Low_complexity 3 122 0 270 179 0 36 chr1 234049429 234049513 -48144151 + G-rich Low_complexity Low_complexity 3 83 0 * 23 33 0 0 chr1 234049561 234049591 -48144073 + AT_rich Low_complexity Low_complexity 1 30 0 2414 263 258 14 chr1 234049885 234050639 -48143025 + L2 LINE L2 836 1405 -1909 1719 184 0 26 chr1 234050639 234050948 -48142716 + AluJo SINE Alu 7 307 -5 2414 263 258 14 chr1 234050948 234051150 -48142514 + L2 LINE L2 1405 1556 -1758 2322 135 62 38 chr1 234051150 234051603 -48142061 + MLT1C LTR MaLR 1 464 -3 2414 263 258 14 chr1 234051603 234052157 -48141507 + L2 LINE L2 1556 2716 -598 2191 126 0 3 chr1 234052174 234052476 -48141188 - AluSx SINE Alu -11 301 1 249 391 53 0 chr1 234052627 234052760 -48140904 + L2 LINE L2 3123 3262 -10 2363 84 7 3 chr1 234053407 234053706 -48139958 - AluY SINE Alu -11 300 1 596 237 79 7 chr1 234054007 234054146 -48139518 + MIR SINE MIR 24 172 -90 1785 114 0 0 chr1 234054246 234054474 -48139190 - AluSx SINE Alu -84 228 1 806 173 0 36 chr1 234054508 234054647 -48139017 + AluJo SINE Alu 3 136 -176 1647 141 0 11 chr1 234054647 234054909 -48138755 + AluJb SINE Alu 40 298 -14 2498 74 0 0 chr1 234055455 234055752 -48137912 + AluSc SINE Alu 1 297 -12 22 0 0 0 chr1 234056769 234056791 -48136873 + AT_rich Low_complexity Low_complexity 1 22 0 714 253 0 12 chr1 234057649 234057811 -48135853 - MER58B DNA MER1_type -1 340 181 181 288 70 112 chr1 234058077 234058292 -48135372 + L2 LINE L2 2553 2758 -556 201 259 86 78 chr1 234058367 234058483 -48135181 - MIR SINE MIR -46 162 46 * 1431 254 83 11 chr1 234058452 234059031 -48134633 + L2 LINE L2 2683 3308 -5 547 237 104 0 chr1 234059311 234059446 -48134218 - MIR SINE MIR -36 226 78 242 305 157 17 chr1 234060275 234060511 -48133153 + L1MC5 LINE L1 7502 7770 -191 2141 91 38 0 chr1 234060999 234061286 -48132378 - AluY SINE Alu -8 303 6 1976 92 96 0 chr1 234062236 234062508 -48131156 + AluSq SINE Alu 1 298 -15 1608 148 121 0 chr1 234062869 234063133 -48130531 + AluJo SINE Alu 1 296 -16 533 330 16 27 chr1 234063941 234064126 -48129538 - MIR SINE MIR -60 202 20 2254 83 14 7 chr1 234064185 234064474 -48129190 + AluSc SINE Alu 1 291 -18 212 128 0 21 chr1 234064562 234064609 -48129055 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 292 289 56 78 chr1 234064611 234064753 -48128911 - MIR3 SINE MIR -60 148 10 980 214 0 0 chr1 234064770 234064943 -48128721 - AluJb SINE Alu -5 307 135 245 330 73 0 chr1 234065189 234065298 -48128366 + L2 LINE L2 2608 2724 -590 1705 159 30 17 chr1 234065298 234065594 -48128070 - AluJb SINE Alu -8 304 5 2300 107 7 0 chr1 234065844 234066152 -48127512 + AluSx SINE Alu 2 311 -1 1979 149 3 0 chr1 234066179 234066467 -48127197 + AluSx SINE Alu 1 289 -23 682 223 38 16 chr1 234066881 234066935 -48126729 - MER3 DNA MER1_type -21 188 137 2415 105 0 0 chr1 234066935 234067239 -48126425 + AluSx SINE Alu 3 306 -6 682 223 38 16 chr1 234067239 234067368 -48126296 - MER3 DNA MER1_type -72 137 1 195 367 163 7 chr1 234067898 234068045 -48125619 - L2 LINE L2 -1 3271 3102 307 240 68 12 chr1 234068322 234068447 -48125217 - MIR SINE MIR -66 142 18 1135 221 38 90 chr1 234068796 234069075 -48124589 - L1ME1 LINE L1 -47 6119 5876 1732 157 20 27 chr1 234069075 234069238 -48124426 - AluJo SINE Alu -15 297 135 2062 125 39 16 chr1 234069238 234069543 -48124121 - AluSx SINE Alu 0 312 1 1732 157 20 27 chr1 234069543 234069678 -48123986 - AluJo SINE Alu -177 135 1 1135 221 38 90 chr1 234069678 234069896 -48123768 - L1ME1 LINE L1 -290 5876 5648 960 352 96 40 chr1 234070153 234071991 -48121673 + L2 LINE L2 938 2877 -437 403 276 126 61 chr1 234072081 234072342 -48121322 + L2 LINE L2 2993 3270 -2 504 294 20 13 chr1 234072400 234072553 -48121111 + MER5A DNA MER1_type 36 189 0 491 280 103 11 chr1 234072753 234072928 -48120736 + MIR3 SINE MIR 3 193 -15 27 29 0 0 chr1 234074360 234074394 -48119270 + GC_rich Low_complexity Low_complexity 1 34 0 1175 163 9 28 chr1 234074965 234075180 -48118484 + AluJo SINE Alu 85 295 -17 459 301 34 92 chr1 234075390 234075652 -48118012 + L2 LINE L2 2970 3216 -56 902 91 0 0 chr1 234075673 234075783 -48117881 - AluSg/x SINE Alu -13 296 187 297 232 181 45 chr1 234077455 234077610 -48116054 + MIR SINE MIR 87 262 0 209 309 74 12 chr1 234077604 234077685 -48115979 + MIR3 SINE MIR 78 163 -45 * 639 221 34 0 chr1 234077840 234077989 -48115675 + MIR SINE MIR 106 259 -3 2113 110 0 7 chr1 234078879 234079161 -48114503 - AluSq SINE Alu -17 296 17 2238 71 0 11 chr1 234081135 234081417 -48112247 - AluSg SINE Alu -5 305 27 391 306 76 14 chr1 234085741 234085885 -48107779 + MER5B DNA MER1_type 10 162 -16 418 214 107 79 chr1 234085898 234086113 -48107551 + L1MC4 LINE L1 7736 7956 -86 239 173 54 0 chr1 234086223 234086323 -48107341 + MER91C DNA MER1_type 36 103 -37 208 0 0 59 chr1 234086485 234086519 -48107145 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 1169 158 130 16 chr1 234086519 234086772 -48106892 - AluJb SINE Alu -30 282 1 205 253 13 53 chr1 234087392 234087467 -48106197 - MIR3 SINE MIR -6 202 131 1433 314 120 27 chr1 234087848 234088770 -48104894 - L2 LINE L2 -550 2764 1696 2419 59 3 0 chr1 234088770 234089073 -48104591 + AluSp SINE Alu 1 304 -9 1433 314 120 27 chr1 234089073 234089391 -48104273 - L2 LINE L2 -1618 1696 1409 766 231 0 18 chr1 234090505 234090674 -48102990 - FRAM SINE Alu 0 166 1 1268 240 171 18 chr1 234090805 234091243 -48102421 + MLT1D LTR MaLR 1 505 0 2122 106 20 0 chr1 234091273 234091566 -48102098 + AluSx SINE Alu 1 299 -13 1078 281 100 51 chr1 234091595 234092144 -48101520 + MLT1K LTR MaLR 13 588 0 254 347 83 28 chr1 234092255 234092399 -48101265 - MIR3 SINE MIR -17 191 40 2967 245 72 24 chr1 234093010 234093774 -48099890 - L2 LINE L2 -243 3070 2247 537 113 0 0 chr1 234093774 234093854 -48099810 - MADE1 DNA Mariner 0 80 1 2967 245 72 24 chr1 234093854 234094096 -48099568 - L2 LINE L2 -1066 2247 2018 579 316 183 40 chr1 234094784 234096026 -48097638 + L2 LINE L2 556 1974 -1340 2132 277 81 26 chr1 234096278 234096840 -48096824 + L2 LINE L2 1851 2380 -933 637 173 9 9 chr1 234096840 234096950 -48096714 - MER81 DNA DNA -4 110 1 2132 277 81 26 chr1 234096950 234097700 -48095964 + L2 LINE L2 2380 3313 0 1454 170 7 28 chr1 234097962 234098245 -48095419 + AluJo SINE Alu 14 290 -22 2208 96 6 19 chr1 234098470 234098783 -48094881 - AluSg SINE Alu -1 309 1 300 350 123 39 chr1 234099094 234099680 -48093984 + L2 LINE L2 2342 2976 -338 496 242 107 34 chr1 234099796 234099945 -48093719 + MIR SINE MIR 3 162 -100 469 267 95 33 chr1 234099960 234100170 -48093494 - MIR SINE MIR -27 235 13 810 201 0 19 chr1 234100517 234100676 -48092988 + FRAM SINE Alu 1 153 -23 756 241 78 4 chr1 234100701 234100933 -48092731 + L1MEc LINE L1 1565 1813 -4583 270 0 0 0 chr1 234101034 234101064 -48092600 + (CA)n Simple_repeat Simple_repeat 1 30 0 1244 185 121 24 chr1 234101071 234101444 -48092220 + L1MEc LINE L1 1988 2396 -4000 233 315 15 0 chr1 234101475 234101605 -48092059 + L1ME1 LINE L1 34 165 -6377 954 178 60 5 chr1 234101638 234101823 -48091841 - MER20 DNA MER1_type -3 216 22 2563 210 38 62 chr1 234101823 234102283 -48091381 + L1ME1 LINE L1 2924 3353 -3291 1696 162 10 14 chr1 234102283 234102447 -48091217 - AluJb SINE Alu -16 296 132 218 32 32 0 chr1 234102447 234102478 -48091186 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1696 162 10 14 chr1 234102478 234102610 -48091054 - AluJb SINE Alu -180 132 1 2563 210 38 62 chr1 234102610 234103068 -48090596 + L1ME1 LINE L1 3353 3820 -2824 1641 219 106 45 chr1 234103071 234103629 -48090035 + L1ME1 LINE L1 4576 5167 -1477 2441 203 67 28 chr1 234104082 234105094 -48088570 + L1ME1 LINE L1 5155 6226 -438 256 274 0 0 chr1 234105094 234105167 -48088497 + (TA)n Simple_repeat Simple_repeat 1 73 0 794 157 59 129 chr1 234105190 234105445 -48088219 + L1ME1 LINE L1 6229 6465 -199 818 182 0 0 chr1 234105448 234105580 -48088084 + AluJb SINE Alu 2 133 -179 198 71 0 0 chr1 234105581 234105609 -48088055 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 1022 144 21 16 chr1 234105609 234105803 -48087861 + AluJb SINE Alu 118 312 0 844 234 37 0 chr1 234105806 234105994 -48087670 + L1ME1 LINE L1 6464 6658 -6 1559 74 52 130 chr1 234106009 234106133 -48087531 + L1MA8 LINE L1 5990 6122 -169 1502 185 25 0 chr1 234106133 234106462 -48087202 + AluJo SINE Alu 1 336 0 1660 113 8 12 chr1 234106466 234106723 -48086941 + AluSx SINE Alu 3 258 -54 1559 74 52 130 chr1 234106723 234106916 -48086748 + L1MA8 LINE L1 6125 6288 -3 1552 157 27 31 chr1 234107418 234107711 -48085953 + AluJo SINE Alu 1 292 -20 679 125 54 9 chr1 234108369 234108481 -48085183 + FLAM_C SINE Alu 2 118 -25 1736 148 21 3 chr1 234108505 234108796 -48084868 + AluJb SINE Alu 3 298 -14 466 266 205 25 chr1 234108800 234109044 -48084620 - L2 LINE L2 -6 3307 3020 979 141 13 13 chr1 234109200 234109356 -48084308 + AluJb SINE Alu 147 302 -10 1317 116 134 84 chr1 234109443 234109727 -48083937 - AluJb SINE Alu -14 298 1 1183 147 9 41 chr1 234110825 234111043 -48082621 + AluJb SINE Alu 86 296 -16 1242 151 34 64 chr1 234111523 234111788 -48081876 - AluJo SINE Alu -20 292 36 235 217 70 70 chr1 234111919 234112048 -48081616 + L1MC5 LINE L1 7806 7934 -27 1875 147 3 17 chr1 234112048 234112348 -48081316 + AluJb SINE Alu 1 296 -16 2174 85 3 3 chr1 234113457 234113750 -48079914 - AluSg SINE Alu -17 293 1 2106 99 17 0 chr1 234113769 234114061 -48079603 - AluSx SINE Alu -15 297 1 2304 166 17 5 chr1 234114081 234114491 -48079173 - L1MB3 LINE L1 -7 6176 5762 224 241 208 9 chr1 234116219 234116309 -48077355 - MIR SINE MIR -71 137 33 317 271 123 19 chr1 234117267 234117422 -48076242 - L3b LINE CR1 -205 1378 1208 1806 142 24 3 chr1 234119356 234119644 -48074020 + AluJb SINE Alu 2 295 -17 196 233 47 0 chr1 234119879 234119922 -48073742 + L2 LINE L2 3247 3291 -22 2097 105 0 0 chr1 234120321 234120629 -48073035 + AluSq SINE Alu 1 308 0 553 338 88 27 chr1 234120671 234121159 -48072505 - L2 LINE L2 -687 2627 2110 285 363 97 8 chr1 234121551 234121675 -48071989 + MIR3 SINE MIR 48 182 -26 573 211 99 129 chr1 234122399 234122750 -48070914 - L1MC5 LINE L1 -26 7935 7600 1405 190 39 14 chr1 234122750 234123029 -48070635 - AluJo SINE Alu -26 286 1 573 211 99 129 chr1 234123029 234123142 -48070522 - L1MC5 LINE L1 -361 7600 7485 2025 112 20 3 chr1 234123700 234123869 -48069795 - AluSx SINE Alu -12 300 122 189 0 0 0 chr1 234123869 234123890 -48069774 + (TA)n Simple_repeat Simple_repeat 2 22 0 2025 112 20 3 chr1 234123890 234124015 -48069649 - AluSx SINE Alu -190 122 1 988 279 64 6 chr1 234124154 234124466 -48069198 - L3 LINE CR1 -3 1574 1245 738 246 23 0 chr1 234124921 234125096 -48068568 + MIR SINE MIR 72 250 -12 261 286 0 0 chr1 234126036 234126099 -48067565 - Charlie8 DNA MER1_type -2275 142 80 677 304 27 11 chr1 234126099 234126283 -48067381 - MER91A DNA MER1_type -2 194 8 332 286 0 0 chr1 234126311 234126381 -48067283 - Charlie8 DNA MER1_type -2344 73 4 337 259 12 0 chr1 234128220 234128305 -48065359 + L1ME2 LINE L1 6069 6154 -10 245 216 45 131 chr1 234128381 234128412 -48065252 + L1MC4 LINE L1 7865 7897 -145 1827 145 3 31 chr1 234128412 234128729 -48064935 + AluJo SINE Alu 1 308 -4 245 216 45 131 chr1 234128729 234128873 -48064791 + L1MC4 LINE L1 7897 8025 -17 489 274 23 23 chr1 234129362 234129537 -48064127 + MER5B DNA MER1_type 1 175 -3 290 227 61 0 chr1 234130787 234130853 -48062811 + MIR3 SINE MIR 119 188 -20 1804 111 48 4 chr1 234131202 234131503 -48062161 - AluSx SINE Alu 0 313 1 406 200 25 0 chr1 234131503 234131583 -48062081 - L2 LINE L2 -6 3307 3226 1086 136 24 0 chr1 234131583 234131752 -48061912 + AluJb SINE Alu 127 299 -13 288 153 14 56 chr1 234132609 234132681 -48060983 + L3 LINE CR1 1486 1554 -23 343 220 110 0 chr1 234134685 234134776 -48058888 + MIR SINE MIR 51 151 -111 257 361 21 0 chr1 234134958 234135055 -48058609 - MIR SINE MIR -43 219 121 1262 115 91 5 chr1 234135388 234135596 -48058068 - AluJb SINE Alu -2 310 85 1790 168 3 19 chr1 234135754 234136063 -48057601 - AluJb SINE Alu -8 304 1 2274 65 7 10 chr1 234136881 234137172 -48056492 - AluSp SINE Alu -16 297 8 232 233 0 0 chr1 234137744 234137787 -48055877 + (CGTG)n Simple_repeat Simple_repeat 3 45 0 378 0 0 0 chr1 234139528 234139570 -48054094 + (CA)n Simple_repeat Simple_repeat 2 43 0 2403 77 0 0 chr1 234141141 234141440 -48052224 - AluSx SINE Alu -13 299 1 181 182 0 91 chr1 234141518 234141562 -48052102 + L3 LINE CR1 1430 1469 -108 1190 442 20 0 chr1 234141662 234141954 -48051710 - AluJo SINE Alu -3 299 2 223 187 80 67 chr1 234145080 234145155 -48048509 - MIR SINE MIR -177 85 10 289 105 0 0 chr1 234145411 234145449 -48048215 + Alu SINE Alu 2 39 -263 261 57 0 0 chr1 234145613 234145648 -48048016 + (TG)n Simple_repeat Simple_repeat 1 35 0 453 286 82 0 chr1 234146988 234147135 -48046529 - MIR SINE MIR -1 261 103 267 289 23 102 chr1 234147172 234147300 -48046364 + MIR SINE MIR 47 164 -98 269 299 0 82 chr1 234147555 234147689 -48045975 - L2 LINE L2 -19 3294 3172 1242 221 136 60 chr1 234147947 234148462 -48045202 + MLT1H1 LTR MaLR 2 555 0 304 263 33 38 chr1 234148682 234148985 -48044679 + L1ME4a LINE L1 5650 5951 -170 383 223 0 181 chr1 234150275 234150463 -48043201 + MER5B DNA MER1_type 1 154 -24 192 367 51 0 chr1 234150464 234150562 -48043102 - MIR3 SINE MIR -50 158 56 795 286 71 4 chr1 234150626 234150878 -48042786 + L3 LINE CR1 597 865 -712 1997 135 7 0 chr1 234150965 234151261 -48042403 + AluSx SINE Alu 1 298 -14 675 141 50 0 chr1 234151286 234151385 -48042279 + FLAM_A SINE Alu 1 104 -38 183 42 0 0 chr1 234151385 234151409 -48042255 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 591 194 150 31 chr1 234151569 234151729 -48041935 - MER5A DNA MER1_type -6 183 5 382 325 174 5 chr1 234152132 234152344 -48041320 + L3 LINE CR1 861 1108 -469 1033 228 31 20 chr1 234152345 234152599 -48041065 - MIR SINE MIR -2 260 4 541 326 78 20 chr1 234152662 234152907 -48040757 + L3 LINE CR1 1308 1566 -11 822 171 0 0 chr1 234153069 234153198 -48040466 + FLAM_A SINE Alu 2 130 -3 2236 109 0 0 chr1 234153378 234153682 -48039982 + AluSx SINE Alu 1 304 -8 572 122 68 35 chr1 234155698 234155819 -48037845 - MER11B LTR ERVK -656 610 473 3730 32 25 0 chr1 234156359 234156834 -48036830 - MER11B LTR ERVK -749 487 1 2383 78 0 7 chr1 234158317 234158623 -48035041 + AluSx SINE Alu 1 304 -8 1865 150 7 3 chr1 234159100 234159406 -48034258 + AluJb SINE Alu 1 307 -5 244 236 0 36 chr1 234159694 234159749 -48033915 - MIR3 SINE MIR -53 155 103 484 328 104 0 chr1 234160629 234160812 -48032852 - MIR SINE MIR -3 259 58 1516 108 0 0 chr1 234160943 234161146 -48032518 + AluSg/x SINE Alu 89 291 -19 2289 102 0 3 chr1 234161153 234161466 -48032198 + AluSx SINE Alu 1 312 0 256 254 146 31 chr1 234161469 234161599 -48032065 - MIR SINE MIR -28 234 90 1929 160 0 0 chr1 234161765 234162072 -48031592 + AluJo SINE Alu 1 307 -5 286 218 0 0 chr1 234162448 234162503 -48031161 - L2 LINE L2 -1 3312 3258 313 214 60 12 chr1 234162719 234162803 -48030861 - MIR SINE MIR -67 195 108 183 242 30 45 chr1 234162791 234162857 -48030807 + MIR3 SINE MIR 11 75 -133 * 394 315 115 9 chr1 234163564 234163791 -48029873 - MIR SINE MIR -3 259 9 719 242 66 47 chr1 234164273 234164496 -48029168 - MIR SINE MIR 0 262 31 1899 148 0 0 chr1 234164496 234164802 -48028862 - AluSx SINE Alu 0 306 1 719 242 66 47 chr1 234164802 234164833 -48028831 - MIR SINE MIR -231 31 2 482 260 107 60 chr1 234165004 234165038 -48028626 + L1ME4a LINE L1 5477 5508 -613 216 0 0 0 chr1 234165038 234165062 -48028602 + (CA)n Simple_repeat Simple_repeat 1 24 0 482 260 107 60 chr1 234165062 234165355 -48028309 + L1ME4a LINE L1 5508 5826 -295 1713 148 25 4 chr1 234165355 234165653 -48028011 + AluJb SINE Alu 1 304 0 482 260 107 60 chr1 234165653 234165689 -48027975 + L1ME4a LINE L1 5826 5859 -262 416 278 71 5 chr1 234165859 234166057 -48027607 + L1ME LINE L1 5604 5814 -307 787 246 131 11 chr1 234166070 234166330 -48027334 + L3 LINE CR1 1254 1544 -33 202 276 0 61 chr1 234167872 234167970 -48025694 + CT-rich Low_complexity Low_complexity 5 96 0 1181 191 0 17 chr1 234171073 234171309 -48022355 - AluJo SINE Alu -80 232 1 231 295 63 0 chr1 234171318 234171413 -48022251 + MIR SINE MIR 44 144 -118 180 111 0 0 chr1 234172732 234172759 -48020905 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 381 277 67 51 chr1 234172831 234173026 -48020638 + MIR SINE MIR 17 214 -48 929 187 82 0 chr1 234173198 234173369 -48020295 + MER5A DNA MER1_type 4 188 -1 616 357 74 29 chr1 234173423 234174012 -48019652 - L2 LINE L2 -231 3041 2414 813 261 158 21 chr1 234174137 234174566 -48019098 - L2 LINE L2 0 3313 2826 315 146 0 0 chr1 234174813 234174868 -48018796 + (GGA)n Simple_repeat Simple_repeat 3 57 0 218 105 26 0 chr1 234174870 234174908 -48018756 + A-rich Low_complexity Low_complexity 2 40 0 1947 149 0 0 chr1 234174942 234175237 -48018427 + AluSx SINE Alu 3 297 -15 951 104 0 28 chr1 234175598 234175742 -48017922 + AluSg/x SINE Alu 157 296 -16 249 195 24 12 chr1 234179278 234179360 -48014304 + GA-rich Low_complexity Low_complexity 2 84 0 2242 100 3 0 chr1 234180221 234180530 -48013134 + AluSx SINE Alu 1 310 -2 617 208 42 0 chr1 234180781 234180925 -48012739 + L1MB3 LINE L1 6032 6181 -2 201 147 0 0 chr1 234180931 234180965 -48012699 + (GA)n Simple_repeat Simple_repeat 2 35 0 190 347 13 0 chr1 234180969 234181044 -48012620 + MIR SINE MIR 21 96 -166 2331 87 0 0 chr1 234182846 234183145 -48010519 - AluSx SINE Alu -13 299 1 2156 201 57 10 chr1 234183214 234183760 -48009904 + L1ME1 LINE L1 5520 6252 -82 408 230 0 0 chr1 234183833 234183933 -48009731 + L1MA10 LINE L1 6226 6325 -9 236 174 0 22 chr1 234184245 234184291 -48009373 + MER5B DNA MER1_type 1 45 -133 2115 58 0 0 chr1 234184291 234184549 -48009115 - AluY SINE Alu -14 297 40 487 205 209 67 chr1 234184731 234184790 -48008874 + L1ME4a LINE L1 5616 5665 -456 2253 75 0 10 chr1 234184790 234185098 -48008566 + AluSg SINE Alu 5 309 -1 487 205 209 67 chr1 234185098 234185248 -48008416 + L1ME4a LINE L1 5665 5855 -266 319 298 333 6 chr1 234185391 234185559 -48008105 + MIR SINE MIR 21 243 -19 595 110 0 0 chr1 234185723 234185805 -48007859 + FLAM_C SINE Alu 28 109 -34 1244 191 0 30 chr1 234185851 234186118 -48007546 + AluJb SINE Alu 3 261 -51 625 253 38 57 chr1 234186237 234186516 -48007148 + L1M3 LINE L1 5016 5299 -972 2144 98 0 7 chr1 234186516 234186813 -48006851 + AluY SINE Alu 8 302 -9 625 253 38 57 chr1 234186813 234186878 -48006786 + L1M3 LINE L1 5299 5364 -907 2283 94 0 0 chr1 234186878 234187177 -48006487 + AluY SINE Alu 1 299 -12 625 253 38 57 chr1 234187177 234187288 -48006376 + L1M3 LINE L1 5364 5474 -797 2011 134 10 0 chr1 234187456 234187763 -48005901 - AluSx SINE Alu -2 310 1 1076 192 10 14 chr1 234187769 234187977 -48005687 - AluJo SINE Alu -20 292 86 265 208 42 69 chr1 234188393 234188465 -48005199 - L3 LINE CR1 -582 995 926 1088 217 30 18 chr1 234188617 234188882 -48004782 - MIR SINE MIR -1 261 1 202 330 44 84 chr1 234188946 234189149 -48004515 - L3 LINE CR1 -1048 529 335 254 238 191 12 chr1 234189194 234189278 -48004386 + L2 LINE L2 3212 3310 -3 204 303 13 13 chr1 234189354 234189430 -48004234 + L2 LINE L2 2971 3046 -226 183 333 63 16 chr1 234189718 234189781 -48003883 + MIR SINE MIR 2 67 -195 1480 150 16 78 chr1 234189821 234190128 -48003536 - AluJo SINE Alu -24 288 1 25 0 0 0 chr1 234190134 234190159 -48003505 + AT_rich Low_complexity Low_complexity 1 25 0 265 186 119 0 chr1 234191178 234191237 -48002427 + MIR SINE MIR 53 118 -90 190 275 0 0 chr1 234191237 234191277 -48002387 + MIR3 SINE MIR 157 196 -12 862 151 0 0 chr1 234191300 234191439 -48002225 + FLAM_C SINE Alu 1 139 -4 2112 115 0 3 chr1 234191764 234192060 -48001604 + AluSx SINE Alu 1 295 -17 1258 182 130 15 chr1 234192070 234192339 -48001325 + AluJb SINE Alu 1 300 -12 317 281 12 0 chr1 234192397 234192479 -48001185 + MIR SINE MIR 7 89 -173 396 0 0 0 chr1 234194185 234194229 -47999435 + (CA)n Simple_repeat Simple_repeat 2 45 0 234 222 0 0 chr1 234195529 234195583 -47998081 + CT-rich Low_complexity Low_complexity 4 57 0 869 102 0 16 chr1 234196358 234196486 -47997178 + MER39 LTR ERV1 582 707 0 2215 65 0 68 chr1 234196813 234197137 -47996527 - AluY SINE Alu -8 303 2 1099 242 41 65 chr1 234197435 234197630 -47996034 + LTR33 LTR ERVL 103 301 -220 1984 98 37 10 chr1 234197630 234197925 -47995739 - AluY SINE Alu -3 308 6 1099 242 41 65 chr1 234197925 234198146 -47995518 + LTR33 LTR ERVL 301 509 -12 552 341 171 40 chr1 234198159 234199085 -47994579 - L2 LINE L2 -659 2655 1609 2236 79 3 0 chr1 234199288 234199580 -47994084 + AluSp SINE Alu 2 294 -19 206 305 84 21 chr1 234199915 234200010 -47993654 + L2 LINE L2 2641 2741 -573 * 309 244 61 53 chr1 234199994 234200125 -47993539 + L2 LINE L2 3182 3313 0 317 215 183 11 chr1 234200207 234200300 -47993364 + L2 LINE L2 3201 3309 -4 2321 196 22 33 chr1 234200473 234200982 -47992682 + MLT1D LTR MaLR 3 505 0 346 339 25 0 chr1 234201142 234201260 -47992404 + L2 LINE L2 3152 3272 0 1703 176 0 7 chr1 234201345 234201641 -47992023 + AluJb SINE Alu 1 294 -18 1145 202 4 28 chr1 234202090 234202342 -47991322 + AluJo SINE Alu 1 246 -66 4831 143 46 26 chr1 234202654 234203263 -47990401 + L1MA9 LINE L1 5185 5825 -487 2047 116 3 28 chr1 234203263 234203582 -47990082 + AluSq SINE Alu 3 313 0 4831 143 46 26 chr1 234203582 234203921 -47989743 + L1MA9 LINE L1 5825 6156 -156 362 326 125 0 chr1 234204890 234205034 -47988630 + L2 LINE L2 3106 3267 -5 309 321 170 0 chr1 234205098 234205210 -47988454 - MIR3 SINE MIR -5 203 73 2185 112 0 3 chr1 234205405 234205717 -47987947 + AluSq SINE Alu 1 311 -2 2220 89 3 13 chr1 234205842 234206157 -47987507 + AluSx SINE Alu 1 312 0 285 98 0 0 chr1 234206523 234206564 -47987100 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 2312 81 0 10 chr1 234206844 234207151 -47986513 + AluSc SINE Alu 1 304 -5 680 0 0 0 chr1 234207198 234207271 -47986393 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 687 194 42 0 chr1 234207549 234207693 -47985971 + L1MA8 LINE L1 6142 6291 0 684 13 0 0 chr1 234207699 234207774 -47985890 - tRNA-Lys-AAA tRNA tRNA -1 75 1 2033 112 14 0 chr1 234208368 234208654 -47985010 + AluSx SINE Alu 1 290 -22 352 26 0 0 chr1 234208840 234208879 -47984785 + LTR8 LTR ERV1 546 584 -107 881 174 6 12 chr1 234209202 234209363 -47984301 + AluJb SINE Alu 2 161 -151 1005 143 41 10 chr1 234209465 234209661 -47984003 + AluJb SINE Alu 88 289 -23 245 192 50 91 chr1 234209939 234210038 -47983626 + MIR SINE MIR 95 189 -73 1925 95 4 0 chr1 234210373 234210626 -47983038 - AluSx SINE Alu -20 292 39 2148 102 0 7 chr1 234210960 234211264 -47982400 - AluSx SINE Alu -10 302 1 334 372 97 0 chr1 234211364 234211509 -47982155 - MIR3 SINE MIR -21 187 29 292 118 0 0 chr1 234211604 234211655 -47982009 - Alu SINE Alu 0 300 250 924 147 0 0 chr1 234211655 234211830 -47981834 + AluSc SINE Alu 138 312 0 662 142 0 38 chr1 234211887 234211993 -47981671 + FLAM_C SINE Alu 17 118 -25 1502 131 23 23 chr1 234212099 234212359 -47981305 - AluSx SINE Alu -12 300 41 270 212 59 47 chr1 234212478 234212563 -47981101 + L1MC/D LINE L1 5703 5788 -2020 1129 151 53 27 chr1 234212566 234212791 -47980873 + MLT1B LTR MaLR 1 231 -159 244 148 1 56 chr1 234212792 234212910 -47980754 + AluSc SINE Alu 242 299 0 650 176 0 0 chr1 234212920 234213022 -47980642 + FLAM_C SINE Alu 17 118 -25 894 132 46 13 chr1 234213117 234213269 -47980395 + MLT1B LTR MaLR 234 390 0 1503 98 0 0 chr1 234213356 234213561 -47980103 + AluSg SINE Alu 1 205 -105 2211 75 0 13 chr1 234213723 234214031 -47979633 - AluSq SINE Alu -9 304 1 2004 76 76 3 chr1 234214077 234214365 -47979299 - AluSq SINE Alu -2 311 3 350 305 40 85 chr1 234215299 234215357 -47978307 + MER5A DNA MER1_type 19 78 -111 2149 89 3 10 chr1 234215357 234215661 -47978003 + AluSx SINE Alu 1 302 -10 350 305 40 85 chr1 234215661 234215779 -47977885 + MER5A DNA MER1_type 78 187 -2 299 122 0 0 chr1 234216063 234216104 -47977560 + LTR8 LTR ERV1 546 586 -105 255 61 0 0 chr1 234216104 234216137 -47977527 + (TAA)n Simple_repeat Simple_repeat 1 33 0 290 267 105 38 chr1 234216972 234217077 -47976587 - MER91C DNA MER1_type 0 140 29 1522 149 29 7 chr1 234217130 234217406 -47976258 - AluJb SINE Alu -20 292 11 1254 196 4 23 chr1 234217693 234217958 -47975706 - AluJo SINE Alu -21 291 32 833 210 19 0 chr1 234218268 234218430 -47975234 - AluSx SINE Alu -67 243 79 3173 135 51 11 chr1 234218444 234218970 -47974694 - LTR10A LTR ERV1 -62 547 1 579 157 0 0 chr1 234219015 234219098 -47974566 - AluSx SINE Alu -228 84 2 2147 103 7 0 chr1 234219226 234219527 -47974137 + AluSg SINE Alu 1 303 -7 26 0 0 0 chr1 234220358 234220384 -47973280 + AT_rich Low_complexity Low_complexity 1 26 0 1309 194 4 36 chr1 234220391 234220670 -47972994 + AluJo SINE Alu 13 282 -30 1775 154 0 3 chr1 234220703 234220996 -47972668 + AluJb SINE Alu 2 293 -19 1577 132 20 4 chr1 234221397 234221647 -47972017 - AluSx SINE Alu -58 254 1 255 308 87 29 chr1 234221667 234221771 -47971893 - L2 LINE L2 -275 3038 2929 1735 97 8 20 chr1 234221951 234222199 -47971465 + AluSp SINE Alu 45 289 -24 1330 168 117 0 chr1 234222247 234222503 -47971161 + AluJb SINE Alu 1 286 -26 2343 63 0 3 chr1 234222681 234222982 -47970682 + AluY SINE Alu 1 300 -11 23 0 0 0 chr1 234223058 234223081 -47970583 + AT_rich Low_complexity Low_complexity 1 23 0 1722 158 30 16 chr1 234223288 234223591 -47970073 + AluJo SINE Alu 1 307 -5 566 203 203 12 chr1 234223714 234223877 -47969787 + MIR SINE MIR 45 238 -24 446 219 131 25 chr1 234223896 234224056 -47969608 - MLT1H LTR MaLR 0 549 373 277 227 91 73 chr1 234224165 234224275 -47969389 - MLT1H LTR MaLR -216 339 228 24 32 0 0 chr1 234224526 234224557 -47969107 + AT_rich Low_complexity Low_complexity 1 31 0 2375 76 0 0 chr1 234224761 234225065 -47968599 - AluY SINE Alu -7 304 1 1349 168 48 48 chr1 234225315 234225607 -47968057 + AluJb SINE Alu 1 292 -20 2093 75 40 0 chr1 234225684 234225962 -47967702 + AluSp SINE Alu 11 299 -14 21 0 0 0 chr1 234226375 234226396 -47967268 + AT_rich Low_complexity Low_complexity 1 21 0 1663 172 3 0 chr1 234228176 234228467 -47965197 - AluJb SINE Alu -9 303 12 456 267 146 69 chr1 234229197 234229575 -47964089 - L2 LINE L2 0 3313 2907 293 316 101 7 chr1 234229590 234229729 -47963935 - L2 LINE L2 -1991 1323 1172 2036 112 0 7 chr1 234229850 234230146 -47963518 + AluSq SINE Alu 1 294 -19 22 0 0 0 chr1 234230321 234230343 -47963321 + AT_rich Low_complexity Low_complexity 1 22 0 1053 216 88 47 chr1 234230775 234231220 -47962444 - L1MC5 LINE L1 -207 7754 7292 1535 181 0 4 chr1 234231695 234231960 -47961704 - AluJb SINE Alu -48 264 1 1652 168 6 25 chr1 234232070 234232386 -47961278 - AluJo SINE Alu 0 312 3 1553 177 6 13 chr1 234232783 234233094 -47960570 - AluJb SINE Alu -3 309 1 574 232 14 0 chr1 234233108 234233246 -47960418 - L1MD3 LINE L1 -10 7985 7846 2365 80 0 0 chr1 234233457 234233759 -47959905 - AluY SINE Alu -9 302 1 1986 99 3 27 chr1 234233849 234234143 -47959521 - AluSx SINE Alu -25 287 1 1693 146 64 0 chr1 234236484 234236647 -47957017 - AluSx SINE Alu -13 299 109 2110 107 7 0 chr1 234236647 234236946 -47956718 - AluSp SINE Alu -12 301 1 1693 146 64 0 chr1 234236946 234237063 -47956601 - AluSx SINE Alu -203 109 1 841 144 181 21 chr1 234237265 234237300 -47956364 + MER46B DNA MER2_type 2 30 -2701 2156 109 3 10 chr1 234237300 234237611 -47956053 - AluSc SINE Alu 0 309 1 841 144 181 21 chr1 234237611 234237763 -47955901 + MER46B DNA MER2_type 30 94 -142 1401 77 5 15 chr1 234237882 234238077 -47955587 + AluY SINE Alu 104 296 -15 507 46 15 0 chr1 234238080 234238145 -47955519 + MER46B DNA MER2_type 115 180 -56 2269 96 0 0 chr1 234238258 234238560 -47955104 + AluSq SINE Alu 1 302 -11 1596 147 3 80 chr1 234238954 234239268 -47954396 + AluJo SINE Alu 1 290 -22 476 316 53 27 chr1 234240795 234240982 -47952682 + L2 LINE L2 2167 2358 -956 889 111 29 88 chr1 234240986 234241157 -47952507 + AluJo SINE Alu 1 161 -151 427 317 58 22 chr1 234241185 234241409 -47952255 + L2 LINE L2 2827 3058 -255 644 238 131 56 chr1 234241483 234241735 -47951929 + L2 LINE L2 3043 3313 0 180 250 0 0 chr1 234242138 234242178 -47951486 + L2 LINE L2 3274 3313 0 1517 106 60 0 chr1 234242742 234242959 -47950705 - MER30 DNA MER1_type 0 230 1 986 126 57 0 chr1 234243491 234243650 -47950014 - FRAM SINE Alu -8 168 1 1987 126 0 14 chr1 234244396 234244689 -47948975 - AluSx SINE Alu -19 293 5 2259 144 71 27 chr1 234244720 234244950 -47948714 - MSTA LTR MaLR 0 428 170 1906 107 48 0 chr1 234244950 234245254 -47948410 - AluSx SINE Alu 0 317 1 2259 144 71 27 chr1 234245254 234245432 -47948232 - MSTA LTR MaLR -258 170 1 1032 180 184 0 chr1 234245440 234245679 -47947985 + L1ME2 LINE L1 5866 6148 -16 397 234 331 11 chr1 234245798 234245973 -47947691 + MIR SINE MIR 14 244 -18 278 239 0 15 chr1 234245967 234246034 -47947630 + L2 LINE L2 3018 3083 -189 * 400 283 6 19 chr1 234246326 234246485 -47947179 + (TGAA)n Simple_repeat Simple_repeat 4 160 0 523 221 18 43 chr1 234247286 234247449 -47946215 - L2 LINE L2 -26 3287 3129 344 242 22 0 chr1 234247478 234247569 -47946095 - LTR67 LTR ERVL -8 549 457 218 252 178 37 chr1 234247939 234248046 -47945618 - L2 LINE L2 -248 3024 2903 2170 208 40 58 chr1 234248397 234248497 -47945167 - L1MEc LINE L1 -3093 3122 3022 1521 158 3 42 chr1 234248497 234248808 -47944856 - AluJo SINE Alu -13 299 1 2170 208 40 58 chr1 234248808 234249332 -47944332 - L1MEc LINE L1 -3193 3022 2509 657 260 7 0 chr1 234249391 234249537 -47944127 - L1MEc LINE L1 -5757 639 493 813 158 34 0 chr1 234249538 234249729 -47943935 - AluJb SINE Alu 0 329 134 2076 112 30 0 chr1 234249739 234250035 -47943629 - AluSx SINE Alu -6 306 2 1726 241 20 26 chr1 234250038 234250494 -47943170 - L1MEc LINE L1 -5900 496 44 2238 97 0 13 chr1 234250596 234250904 -47942760 - AluSg SINE Alu -6 304 1 2807 309 72 9 chr1 234250960 234252028 -47941636 + ERVL LTR ERVL 3281 4415 -1349 2034 121 3 6 chr1 234252381 234252695 -47940969 - AluSq SINE Alu 0 313 1 617 263 0 0 chr1 234253069 234253202 -47940462 - FLAM_A SINE Alu 0 133 1 26 30 0 0 chr1 234253330 234253363 -47940301 + AT_rich Low_complexity Low_complexity 1 33 0 1675 155 3 14 chr1 234253569 234253859 -47939805 - AluJo SINE Alu -5 307 21 2068 108 7 0 chr1 234255110 234255398 -47938266 - AluSp SINE Alu -23 290 1 471 184 41 0 chr1 234255465 234255563 -47938101 - HsTC2 DNA Tc2 -3 1895 1794 304 239 217 7 chr1 234257340 234257478 -47936186 - L1ME2 LINE L1 -1 6163 5997 1402 175 32 32 chr1 234257561 234257841 -47935823 - AluJo SINE Alu -32 280 1 599 182 88 44 chr1 234257919 234257941 -47935723 - Charlie2a DNA MER1_type -1192 1670 1650 1290 182 104 0 chr1 234257941 234258210 -47935454 - AluJo SINE Alu -15 297 1 599 182 88 44 chr1 234258210 234258368 -47935296 - Charlie2a DNA MER1_type -1212 1650 1482 1678 159 0 11 chr1 234258411 234258718 -47934946 - AluJb SINE Alu 0 308 5 578 256 44 98 chr1 234258759 234259076 -47934588 - Charlie2a DNA MER1_type -2559 303 4 205 309 148 19 chr1 234259087 234259249 -47934415 - MER5A DNA MER1_type -6 183 1 916 43 26 0 chr1 234259256 234259372 -47934292 + MER30 DNA MER1_type 1 119 -111 269 170 38 0 chr1 234259674 234259727 -47933937 - MER94 DNA DNA -76 58 4 2903 86 5 10 chr1 234261210 234261594 -47932070 - MER57B LTR ERV1 -52 382 1 203 297 47 0 chr1 234261594 234261658 -47932006 - L2 LINE L2 -12 3301 3235 573 341 81 10 chr1 234261725 234262109 -47931555 - L2 LINE L2 -355 2959 2549 219 296 74 25 chr1 234262168 234262249 -47931415 - MIR SINE MIR -130 132 48 350 189 124 119 chr1 234262382 234262474 -47931190 - L2 LINE L2 -810 2504 2414 2116 90 31 3 chr1 234262474 234262764 -47930900 + AluSx SINE Alu 1 298 -14 350 189 124 119 chr1 234262764 234262872 -47930792 - L2 LINE L2 -900 2414 2303 307 350 133 49 chr1 234262899 234263267 -47930397 - L2 LINE L2 -22 3250 2852 883 36 90 0 chr1 234263562 234263673 -47929991 - 5S rRNA rRNA 0 121 1 221 247 0 62 chr1 234263883 234263980 -47929684 - L2 LINE L2 -1949 1365 1275 1082 213 38 0 chr1 234264020 234264231 -47929433 - MER20 DNA MER1_type 0 219 1 201 257 135 14 chr1 234264253 234264327 -47929337 + L2 LINE L2 1180 1262 -2052 738 284 72 18 chr1 234264699 234264977 -47928687 + MLT1I LTR MaLR 116 408 -1 400 300 138 24 chr1 234264991 234265238 -47928426 - L2 LINE L2 -2493 821 547 192 77 0 0 chr1 234265247 234265273 -47928391 + (TG)n Simple_repeat Simple_repeat 1 26 0 359 272 0 33 chr1 234265273 234265365 -47928299 + L1MC4 LINE L1 6615 6703 -1339 188 260 282 44 chr1 234265396 234265577 -47928087 - L2 LINE L2 -2802 512 289 2256 84 10 3 chr1 234265589 234265899 -47927765 + AluSq SINE Alu 1 312 -1 693 188 77 33 chr1 234266058 234266239 -47927425 - MER5A DNA MER1_type 0 189 1 342 247 11 8 chr1 234266922 234267015 -47926649 + MIR3 SINE MIR 68 158 -50 1795 138 32 3 chr1 234267989 234268272 -47925392 + AluSx SINE Alu 1 291 -21 273 290 124 21 chr1 234268298 234268443 -47925221 - MIR3 SINE MIR -4 204 45 275 205 179 13 chr1 234268500 234268578 -47925086 - MIR SINE MIR -8 254 164 1374 162 143 0 chr1 234268883 234269149 -47924515 - AluSx SINE Alu -8 304 1 469 291 43 60 chr1 234269406 234269708 -47923956 - MER102b DNA MER1_type -6 335 39 301 293 182 20 chr1 234269797 234269995 -47923669 + L3 LINE CR1 1345 1574 -3 1843 158 32 56 chr1 234270991 234271051 -47922613 - MLT1A1 LTR MaLR 0 365 305 2048 139 0 0 chr1 234271051 234271353 -47922311 - AluSx SINE Alu -10 302 1 1843 158 32 56 chr1 234271353 234271666 -47921998 - MLT1A1 LTR MaLR -60 305 1 828 115 14 22 chr1 234271921 234272060 -47921604 - AluSg/x SINE Alu -3 306 169 1874 111 0 0 chr1 234272160 234272412 -47921252 - AluSx SINE Alu -58 254 3 1114 220 57 7 chr1 234272776 234273072 -47920592 + LTR37A LTR ERV1 77 387 -39 383 265 86 40 chr1 234273582 234273733 -47919931 - MIR SINE MIR -56 206 49 1795 93 3 67 chr1 234273741 234274041 -47919623 + AluSq SINE Alu 1 281 -32 261 0 0 0 chr1 234274041 234274070 -47919594 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 219 91 0 0 chr1 234275548 234275581 -47918083 - L2 LINE L2 0 3272 3240 597 238 104 24 chr1 234276342 234276506 -47917158 - MIR SINE MIR -58 204 28 256 62 0 0 chr1 234276561 234276593 -47917071 - MLT1K LTR MaLR -12 576 545 27 0 0 0 chr1 234276898 234276925 -47916739 + AT_rich Low_complexity Low_complexity 1 27 0 207 359 0 0 chr1 234277368 234277432 -47916232 + MIR SINE MIR 82 145 -117 2431 124 64 98 chr1 234278016 234278549 -47915115 - LTR8 LTR ERV1 0 691 177 327 238 48 22 chr1 234278596 234278732 -47914932 + MIR SINE MIR 57 197 -65 364 270 79 89 chr1 234278985 234279095 -47914569 - MIR SINE MIR -11 251 141 1621 164 7 17 chr1 234279095 234279394 -47914270 - AluJo SINE Alu -16 296 1 364 270 79 89 chr1 234279394 234279523 -47914141 - MIR SINE MIR -121 141 16 211 238 139 40 chr1 234279923 234280024 -47913640 + L2 LINE L2 3197 3307 -6 252 298 38 70 chr1 234280087 234280245 -47913419 - L2 LINE L2 -2 3311 3159 214 356 7 15 chr1 234280645 234280780 -47912884 - MIR SINE MIR -19 243 110 1543 167 32 32 chr1 234281788 234282100 -47911564 - AluJb SINE Alu 0 312 1 246 271 234 0 chr1 234282462 234282550 -47911114 + L2 LINE L2 3180 3298 -15 261 75 0 0 chr1 234282550 234282590 -47911074 + (TA)n Simple_repeat Simple_repeat 2 41 0 246 271 234 0 chr1 234282590 234282608 -47911056 + L2 LINE L2 3298 3311 -2 1008 244 66 39 chr1 234282666 234283254 -47910410 - L1ME4a LINE L1 -21 6100 5447 1264 134 21 5 chr1 234283315 234283501 -47910163 - MER20 DNA MER1_type -24 195 7 265 102 271 0 chr1 234283515 234283574 -47910090 - MLT1K LTR MaLR 0 588 514 2084 92 51 0 chr1 234284521 234284814 -47908850 - AluSc SINE Alu -1 308 1 275 245 120 2 chr1 234284846 234284941 -47908723 + MIR SINE MIR 55 144 -64 1859 149 0 13 chr1 234285003 234285319 -47908345 + AluJb SINE Alu 1 312 0 445 252 172 0 chr1 234285578 234285729 -47907935 + MIR SINE MIR 74 250 -12 253 382 46 7 chr1 234285750 234285902 -47907762 - L2 LINE L2 -34 3279 3122 201 74 0 0 chr1 234287019 234287046 -47906618 + (TTTCC)n Simple_repeat Simple_repeat 1 27 0 2412 103 0 0 chr1 234287462 234287772 -47905892 - AluSx SINE Alu -1 311 2 781 153 0 29 chr1 234287775 234287970 -47905694 - FLAM_A SINE Alu 0 191 1 3566 131 22 23 chr1 234287971 234288472 -47905192 - L1MC1 LINE L1 -506 5827 5312 2139 111 10 0 chr1 234288472 234288799 -47904865 - AluSx SINE Alu 0 312 1 3566 131 22 23 chr1 234288799 234289019 -47904645 - L1MC1 LINE L1 -1021 5312 5093 347 322 119 53 chr1 234289081 234289460 -47904204 + L2 LINE L2 2836 3239 -33 708 269 125 0 chr1 234289474 234289690 -47903974 - MIR SINE MIR 0 262 20 1013 145 57 0 chr1 234290443 234290602 -47903062 - FRAM SINE Alu -8 168 1 2437 83 3 6 chr1 234291380 234291694 -47901970 - AluSq SINE Alu 0 313 1 342 304 29 10 chr1 234291845 234291947 -47901717 - L3 LINE CR1 -16 1561 1458 606 229 122 27 chr1 234291983 234292171 -47901493 - MIR SINE MIR -56 206 1 * 683 311 183 7 chr1 234292171 234292594 -47901070 - L3 LINE CR1 -118 1459 962 198 191 0 0 chr1 234292852 234292899 -47900765 + (TG)n Simple_repeat Simple_repeat 1 47 0 395 234 0 45 chr1 234293744 234293855 -47899809 + MIR SINE MIR 79 184 -78 211 270 198 36 chr1 234294659 234294770 -47898894 + MIR SINE MIR 21 149 -113 1600 146 48 16 chr1 234294784 234295093 -47898571 + L1MC1 LINE L1 6015 6333 0 776 310 84 55 chr1 234296253 234296908 -47896756 - L2 LINE L2 0 3272 2582 3471 127 74 10 chr1 234297336 234297956 -47895708 + L1MB2 LINE L1 5510 6169 -2 1906 168 21 0 chr1 234298006 234298297 -47895367 + AluJb SINE Alu 1 297 -15 1814 147 87 3 chr1 234298297 234298582 -47895082 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr1 234298655 234298679 -47894985 + AT_rich Low_complexity Low_complexity 1 24 0 2350 105 0 0 chr1 234299890 234300186 -47893478 - AluSg SINE Alu -14 296 1 2417 110 0 0 chr1 234300704 234301014 -47892650 - AluSq SINE Alu -2 311 2 656 279 121 0 chr1 234301158 234301398 -47892266 + L3 LINE CR1 1307 1575 -2 304 223 43 11 chr1 234301728 234301747 -47891917 - MIR SINE MIR -13 249 232 859 184 29 11 chr1 234301747 234301921 -47891743 - MER5B DNA MER1_type 0 178 2 304 223 43 11 chr1 234301921 234301990 -47891674 - MIR SINE MIR -30 232 158 898 189 61 11 chr1 234301990 234302170 -47891494 + MER5A DNA MER1_type 1 189 0 247 163 0 0 chr1 234303336 234303379 -47890285 + MIR SINE MIR 37 79 -129 513 298 11 45 chr1 234303768 234303946 -47889718 + MIR SINE MIR 21 192 -70 189 0 0 0 chr1 234305068 234305089 -47888575 + (TA)n Simple_repeat Simple_repeat 2 22 0 2102 117 4 4 chr1 234305096 234305377 -47888287 - AluSx SINE Alu -26 286 6 812 290 43 16 chr1 234305402 234305657 -47888007 + MIR SINE MIR 1 262 0 435 292 26 93 chr1 234306010 234306236 -47887428 + L3 LINE CR1 69 279 -1298 763 254 150 33 chr1 234306250 234306859 -47886805 + L2 LINE L2 2621 3306 -7 458 238 0 0 chr1 234306906 234306990 -47886674 + MER81 DNA DNA 2 85 -29 1172 337 67 25 chr1 234307023 234307453 -47886211 + L3 LINE CR1 370 841 -736 2283 93 3 10 chr1 234307453 234307763 -47885901 - AluSx SINE Alu -4 308 1 1172 337 67 25 chr1 234307763 234308021 -47885643 + L3 LINE CR1 841 1087 -490 695 230 39 0 chr1 234309324 234309502 -47884162 + MER5A DNA MER1_type 1 185 -4 202 182 18 36 chr1 234310286 234310341 -47883323 + CT-rich Low_complexity Low_complexity 3 56 0 24 32 0 0 chr1 234310580 234310611 -47883053 + AT_rich Low_complexity Low_complexity 1 31 0 2139 116 7 3 chr1 234313666 234313958 -47879706 - AluSx SINE Alu -19 293 1 192 77 0 0 chr1 234314095 234314121 -47879543 + (TG)n Simple_repeat Simple_repeat 2 27 0 216 248 80 88 chr1 234314698 234314835 -47878829 + L2 LINE L2 2940 3075 -197 599 283 34 15 chr1 234315256 234315461 -47878203 - MIR SINE MIR -7 255 47 255 284 32 27 chr1 234316160 234316306 -47877358 + MIR SINE MIR 20 162 -46 252 340 39 19 chr1 234317121 234317224 -47876440 + L2 LINE L2 3141 3245 -27 525 305 33 35 chr1 234317254 234317455 -47876209 - MIR SINE MIR -41 167 5 220 233 0 33 chr1 234318090 234318150 -47875514 + C-rich Low_complexity Low_complexity 4 61 0 434 255 69 14 chr1 234318542 234318687 -47874977 + MIR SINE MIR 60 212 -50 281 89 22 0 chr1 234318745 234318790 -47874874 - HSMAR1 DNA Mariner 0 1287 1242 561 244 72 43 chr1 234318853 234319062 -47874602 - L1ME3 LINE L1 -8 6154 5940 403 318 73 60 chr1 234319736 234320104 -47873560 + L2 LINE L2 2854 3226 -46 478 258 118 34 chr1 234320140 234320318 -47873346 - MER112 DNA MER1_type -18 242 50 207 100 0 0 chr1 234320321 234320351 -47873313 + (T)n Simple_repeat Simple_repeat 1 30 0 297 291 174 23 chr1 234320487 234320659 -47873005 - MIR SINE MIR -15 247 50 302 285 174 14 chr1 234321121 234321328 -47872336 + L2 LINE L2 3032 3271 -1 202 270 16 16 chr1 234321329 234321392 -47872272 + GA-rich Low_complexity Low_complexity 3 65 0 206 181 319 0 chr1 234321771 234321843 -47871821 + MIR SINE MIR 75 169 -93 1833 163 60 16 chr1 234322772 234322798 -47870866 + L1PA16 LINE L1 5767 5790 -376 2369 84 38 3 chr1 234322798 234323141 -47870523 + THE1A LTR MaLR 1 355 0 1833 163 60 16 chr1 234323141 234323494 -47870170 + L1PA16 LINE L1 5790 6163 -3 366 239 0 83 chr1 234324298 234324372 -47869292 + MIR3 SINE MIR 88 152 -56 957 176 10 31 chr1 234324372 234324565 -47869099 + MER5A DNA MER1_type 1 189 0 366 239 0 83 chr1 234324565 234324599 -47869065 + MIR3 SINE MIR 152 187 -21 423 0 0 0 chr1 234324641 234324688 -47868976 + (TA)n Simple_repeat Simple_repeat 1 47 0 308 181 48 0 chr1 234325003 234325086 -47868578 + L1MB8 LINE L1 6092 6178 0 1659 175 10 42 chr1 234325326 234325634 -47868030 + AluJo SINE Alu 1 298 -14 2256 114 7 0 chr1 234325733 234326032 -47867632 + AluSx SINE Alu 1 301 -11 2398 77 0 10 chr1 234326035 234326334 -47867330 + AluY SINE Alu 2 297 -14 1167 166 106 69 chr1 234326359 234326709 -47866955 + MLT1A1 LTR MaLR 1 363 -2 287 277 177 28 chr1 234326712 234326853 -47866811 - MIR SINE MIR -73 189 28 330 340 125 13 chr1 234326885 234327117 -47866547 - MIR SINE MIR 0 262 5 1527 223 55 20 chr1 234327768 234328195 -47865469 + MLT1C LTR MaLR 1 399 -29 498 224 0 0 chr1 234328196 234328303 -47865361 + MIR SINE MIR 52 158 -104 291 299 35 0 chr1 234328592 234328679 -47864985 + MIR3 SINE MIR 114 203 -5 31 44 0 0 chr1 234328679 234328724 -47864940 + AT_rich Low_complexity Low_complexity 1 45 0 433 221 45 91 chr1 234329776 234329838 -47863826 + MER5B DNA MER1_type 4 67 -111 1467 160 12 100 chr1 234329838 234330169 -47863495 + AluJb SINE Alu 1 302 -10 433 221 45 91 chr1 234330169 234330260 -47863404 + MER5B DNA MER1_type 67 150 -28 413 234 23 128 chr1 234330321 234330539 -47863125 + L1MC5 LINE L1 7723 7917 -44 205 283 0 0 chr1 234330553 234330599 -47863065 - MER5B DNA MER1_type -131 47 2 432 0 0 0 chr1 234331030 234331078 -47862586 + (TG)n Simple_repeat Simple_repeat 2 49 0 401 279 27 0 chr1 234331672 234331783 -47861881 - MIR SINE MIR -62 200 87 2640 59 0 3 chr1 234331787 234332094 -47861570 - AluSg1 SINE Alu -3 306 1 188 194 14 0 chr1 234332692 234332736 -47860928 + MIR SINE MIR 107 150 -112 1684 157 16 26 chr1 234332736 234333042 -47860622 + AluJo SINE Alu 1 303 -9 653 204 138 0 chr1 234333095 234333262 -47860402 - MIR SINE MIR -5 257 68 201 217 22 0 chr1 234333297 234333343 -47860321 + (TA)n Simple_repeat Simple_repeat 2 48 0 2213 148 8 16 chr1 234333432 234333797 -47859867 - MLT1A1 LTR MaLR -1 364 3 2685 108 7 7 chr1 234334406 234334812 -47858852 + MER65A LTR ERV1 40 445 0 236 140 20 40 chr1 234334825 234334875 -47858789 + MIR SINE MIR 106 154 -108 587 224 118 0 chr1 234334889 234335059 -47858605 - MIR SINE MIR -2 260 71 213 226 19 0 chr1 234335347 234335400 -47858264 + (TG)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr1 234335579 234335607 -47858057 + AT_rich Low_complexity Low_complexity 1 28 0 333 232 134 36 chr1 234386952 234387064 -47806600 - MIR SINE MIR -120 142 20 273 250 43 54 chr1 234387285 234387377 -47806287 - MIR SINE MIR -50 212 122 2133 125 38 22 chr1 234387389 234387758 -47805906 - THE1C LTR MaLR 0 375 1 773 163 105 11 chr1 234388392 234388582 -47805082 + MER33 DNA MER1_type 59 266 -58 204 286 18 18 chr1 234388620 234388676 -47804988 + MIR SINE MIR 23 78 -184 260 282 13 13 chr1 234389301 234389379 -47804285 + G-rich Low_complexity Low_complexity 1 78 0 704 196 49 0 chr1 234389532 234389675 -47803989 + MER33 DNA MER1_type 5 154 -170 310 365 30 6 chr1 234389879 234390046 -47803618 + L3b LINE CR1 1285 1455 -128 782 48 10 0 chr1 234390366 234390469 -47803195 + (TC)n Simple_repeat Simple_repeat 2 105 0 532 223 102 6 chr1 234390517 234390674 -47802990 + MER96 DNA MER1_type 3 174 -1 556 275 105 6 chr1 234391266 234391437 -47802227 + MER5A DNA MER1_type 1 188 -1 2307 112 0 0 chr1 234391958 234392262 -47801402 - AluSg SINE Alu -6 304 1 246 163 0 0 chr1 234392293 234392336 -47801328 + MER112 DNA MER1_type 213 255 -5 2003 106 30 0 chr1 234392929 234393194 -47800470 + AluSg SINE Alu 35 307 -3 2292 113 0 0 chr1 234393199 234393491 -47800173 + AluSx SINE Alu 1 292 -20 368 208 50 0 chr1 234393825 234393926 -47799738 - MER69 DNA AcHobo -42 2484 2379 254 148 93 19 chr1 234394088 234394142 -47799522 - MER69 DNA AcHobo -2468 58 1 353 273 107 13 chr1 234394248 234394398 -47799266 + MER5A DNA MER1_type 8 171 -18 276 260 27 0 chr1 234395243 234395316 -47798348 + MIR SINE MIR 188 262 0 197 200 22 22 chr1 234395900 234395945 -47797719 + L2 LINE L2 2431 2475 -839 191 146 24 0 chr1 234400023 234400064 -47793600 + CT-rich Low_complexity Low_complexity 3 44 0 395 250 0 0 chr1 234400684 234400768 -47792896 - L2 LINE L2 0 3313 3230 356 399 25 0 chr1 234401070 234401233 -47792431 - MIR SINE MIR -15 247 81 417 252 63 0 chr1 234402046 234402157 -47791507 - L2 LINE L2 -2 3270 3153 1096 209 13 17 chr1 234402157 234402387 -47791277 + MIR SINE MIR 21 249 -13 186 43 0 0 chr1 234402389 234402412 -47791252 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2165 120 24 0 chr1 234402490 234402781 -47790883 + AluSx SINE Alu 1 298 -14 599 238 72 33 chr1 234403448 234403629 -47790035 - MIR SINE MIR -1 261 74 841 273 112 21 chr1 234404732 234405287 -47788377 - L2 LINE L2 -5 3308 2700 425 285 111 6 chr1 234406538 234406710 -47786954 + MIR SINE MIR 34 223 -39 * 626 249 172 14 chr1 234406673 234406894 -47786770 - MIR SINE MIR 0 262 7 241 194 194 0 chr1 234406890 234406952 -47786712 + MIR SINE MIR 183 256 -6 * 217 314 89 28 chr1 234407069 234407175 -47786489 - MIR SINE MIR -77 131 33 306 0 0 0 chr1 234407567 234407601 -47786063 + (CA)n Simple_repeat Simple_repeat 2 35 0 1919 176 58 54 chr1 234407969 234408470 -47785194 + MLT1D LTR MaLR 3 505 0 345 250 43 43 chr1 234408594 234408710 -47784954 - MIR3 SINE MIR -52 156 41 180 0 0 0 chr1 234409417 234409437 -47784227 + (GGGGA)n Simple_repeat Simple_repeat 3 22 0 567 291 103 14 chr1 234410189 234410402 -47783262 + MIR SINE MIR 21 252 -10 226 311 0 16 chr1 234410524 234410585 -47783079 - L2 LINE L2 -1 3312 3253 246 297 81 18 chr1 234411407 234411518 -47782146 - MIR SINE MIR -75 133 16 199 328 154 29 chr1 234411627 234411978 -47781686 + L2 LINE L2 535 929 -2385 207 0 0 0 chr1 234412068 234412091 -47781573 + (T)n Simple_repeat Simple_repeat 1 23 0 1060 316 183 9 chr1 234412091 234412300 -47781364 + L2 LINE L2 969 1140 -2174 357 43 0 0 chr1 234412300 234412347 -47781317 + (CA)n Simple_repeat Simple_repeat 2 48 0 1060 316 183 9 chr1 234412347 234413130 -47780534 + L2 LINE L2 1140 2134 -1180 456 324 56 69 chr1 234413599 234414144 -47779520 + L2 LINE L2 2682 3223 -49 2036 147 0 3 chr1 234414417 234414717 -47778947 + AluJo SINE Alu 1 299 -13 388 238 30 85 chr1 234414775 234414941 -47778723 - MIR SINE MIR -67 141 34 2299 104 0 0 chr1 234414941 234415229 -47778435 - AluSx SINE Alu -24 288 1 388 238 30 85 chr1 234415229 234415248 -47778416 - MIR SINE MIR -174 34 16 479 337 78 11 chr1 234415713 234415983 -47777681 + L2 LINE L2 2896 3183 -89 394 196 49 10 chr1 234416025 234416127 -47777537 - MIR SINE MIR 0 262 157 680 237 70 33 chr1 234416138 234416555 -47777109 - L1MD2 LINE L1 -1 6358 5884 2367 105 0 3 chr1 234416555 234416861 -47776803 - AluSx SINE Alu -5 307 3 680 237 70 33 chr1 234416861 234417027 -47776637 - L1MD2 LINE L1 -475 5884 5726 199 200 0 0 chr1 234417041 234417076 -47776588 - MIR SINE MIR -160 102 68 292 231 0 0 chr1 234417157 234417209 -47776455 + L2 LINE L2 3248 3299 -14 670 181 0 23 chr1 234418100 234418233 -47775431 + FLAM_C SINE Alu 1 130 -3 191 256 171 12 chr1 234420629 234420711 -47772953 + MIR SINE MIR 42 136 -72 251 357 70 25 chr1 234420909 234421066 -47772598 + MIR SINE MIR 49 212 -50 394 289 120 0 chr1 234421182 234421324 -47772340 + MIR SINE MIR 84 242 -20 315 277 90 54 chr1 234422037 234422203 -47771461 + MER5A DNA MER1_type 18 189 0 346 219 50 113 chr1 234422221 234422381 -47771283 - L1ME3 LINE L1 -2 6160 6011 261 188 87 14 chr1 234422385 234422454 -47771210 - L1ME3 LINE L1 -204 5966 5893 183 80 0 0 chr1 234422550 234422575 -47771089 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr1 234423054 234423077 -47770587 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 273 29 0 0 chr1 234423076 234423110 -47770554 + (TG)n Simple_repeat Simple_repeat 2 35 0 305 280 131 9 chr1 234423201 234423308 -47770356 - L2 LINE L2 -12 3260 3141 323 211 26 13 chr1 234423864 234423940 -47769724 - MIR SINE MIR 0 262 186 279 0 0 0 chr1 234424018 234424049 -47769615 + (CA)n Simple_repeat Simple_repeat 1 31 0 452 353 129 37 chr1 234424732 234425305 -47768359 + HAL1 LINE L1 1 626 -1881 2408 110 0 0 chr1 234425382 234425692 -47767972 + AluSx SINE Alu 1 310 -2 297 244 42 98 chr1 234425698 234425891 -47767773 + HAL1 LINE L1 841 1022 -1485 213 39 0 0 chr1 234426032 234426058 -47767606 + (TG)n Simple_repeat Simple_repeat 2 27 0 2094 117 3 3 chr1 234426091 234426374 -47767290 - AluSx SINE Alu -26 286 4 306 161 16 0 chr1 234426377 234426439 -47767225 - L1M4 LINE L1 -397 5787 5725 908 268 75 57 chr1 234426494 234426935 -47766729 + HAL1 LINE L1 1314 1762 -745 338 200 96 37 chr1 234426951 234427086 -47766578 + L1ME4a LINE L1 5945 6087 -34 2667 52 0 0 chr1 234427191 234427498 -47766166 + AluY SINE Alu 1 307 -4 247 318 61 53 chr1 234427619 234427751 -47765913 + L2 LINE L2 3123 3255 -17 1921 136 3 29 chr1 234427804 234428112 -47765552 + AluJb SINE Alu 1 300 -12 674 263 11 39 chr1 234428484 234428663 -47765001 + MER63A DNA MER1_type 37 210 0 249 266 170 32 chr1 234428945 234429039 -47764625 - MIR SINE MIR -68 140 34 456 200 111 0 chr1 234429249 234429339 -47764325 + MIR SINE MIR 13 112 -150 1056 173 12 0 chr1 234429345 234429513 -47764151 - FRAM SINE Alu -9 167 1 2044 152 0 3 chr1 234429517 234429819 -47763845 - AluJo SINE Alu -9 303 3 507 225 84 7 chr1 234429824 234429966 -47763698 + MIR SINE MIR 110 262 0 213 333 35 0 chr1 234430103 234430190 -47763474 - MIR3 SINE MIR -7 201 112 544 101 13 0 chr1 234430215 234430294 -47763370 + MADE1 DNA Mariner 1 80 0 216 286 44 55 chr1 234430298 234430389 -47763275 + MIR3 SINE MIR 99 188 -20 293 267 178 30 chr1 234430590 234430725 -47762939 + MER5A DNA MER1_type 35 189 0 373 323 138 16 chr1 234430774 234430963 -47762701 - MIR SINE MIR -3 259 48 306 313 0 0 chr1 234431099 234431182 -47762482 + G-rich Low_complexity Low_complexity 1 83 0 317 218 139 10 chr1 234431751 234431852 -47761812 + MER81 DNA DNA 1 114 0 1477 209 93 67 chr1 234431955 234432503 -47761161 - MLT1E2 LTR MaLR -5 621 17 848 203 112 26 chr1 234432689 234432921 -47760743 - MER31B LTR ERV1 -214 252 1 429 292 22 75 chr1 234433545 234433771 -47759893 + MIR SINE MIR 20 233 -29 3427 147 85 10 chr1 234434231 234434855 -47758809 - LTR51 LTR ERV1 0 671 1 341 42 0 21 chr1 234435642 234435690 -47757974 + (CA)n Simple_repeat Simple_repeat 1 47 0 185 283 57 0 chr1 234436206 234436259 -47757405 + L2 LINE L2 3217 3272 0 904 282 120 34 chr1 234436264 234436707 -47756957 - L2 LINE L2 -15 3298 2818 353 268 102 39 chr1 234436727 234436932 -47756732 + L2 LINE L2 3030 3247 -66 277 243 0 0 chr1 234437048 234437118 -47756546 + L3 LINE CR1 571 640 -937 318 264 44 11 chr1 234437201 234437292 -47756372 - L2 LINE L2 -1 3271 3178 241 311 61 61 chr1 234437335 234437467 -47756197 - L2 LINE L2 -14 3258 3127 256 317 41 8 chr1 234438127 234438250 -47755414 + L3 LINE CR1 417 543 -1034 296 322 147 9 chr1 234438833 234439044 -47754620 + L3 LINE CR1 787 1026 -551 43 56 0 0 chr1 234441009 234441080 -47752584 + AT_rich Low_complexity Low_complexity 1 71 0 263 149 0 21 chr1 234441637 234441684 -47751980 + L2 LINE L2 3225 3270 -2 2799 169 49 54 chr1 234442169 234442785 -47750879 + L1MD2 LINE L1 5583 6197 -162 3323 157 8 15 chr1 234442785 234443320 -47750344 - LTR26B LTR ERV1 0 531 1 2799 169 49 54 chr1 234443320 234443354 -47750310 + L1MD2 LINE L1 6197 6230 -129 589 199 38 0 chr1 234443396 234443527 -47750137 + L1MD2 LINE L1 6223 6358 -1 2599 62 0 0 chr1 234444201 234444506 -47749158 - AluY SINE Alu -6 305 1 396 55 0 0 chr1 234445074 234445129 -47748535 + (CA)n Simple_repeat Simple_repeat 1 55 0 821 307 16 20 chr1 234445167 234445421 -47748243 + MIR SINE MIR 7 259 -3 712 291 108 16 chr1 234445476 234445727 -47747937 + L2 LINE L2 2998 3271 -1 1637 160 94 0 chr1 234445787 234446062 -47747602 + AluJb SINE Alu 1 301 -11 850 159 7 0 chr1 234446071 234446209 -47747455 + FLAM_C SINE Alu 1 139 -4 225 309 52 52 chr1 234446240 234446376 -47747288 + L2 LINE L2 2920 3055 -217 366 243 141 41 chr1 234446486 234446669 -47746995 + MIR SINE MIR 5 208 -54 485 318 52 10 chr1 234446739 234446789 -47746875 - MIR SINE MIR -16 246 200 2269 125 3 0 chr1 234446789 234447094 -47746570 - AluSx SINE Alu -6 306 1 485 318 52 10 chr1 234447094 234447235 -47746429 - MIR SINE MIR -62 200 47 277 322 85 17 chr1 234447433 234447551 -47746113 + L2 LINE L2 3143 3268 -4 182 337 79 11 chr1 234448167 234448256 -47745408 + L2 LINE L2 2959 3053 -219 350 287 93 0 chr1 234450819 234450927 -47742737 + MIR SINE MIR 79 196 -66 198 0 0 0 chr1 234451138 234451160 -47742504 + (CA)n Simple_repeat Simple_repeat 2 23 0 243 231 0 0 chr1 234451888 234451940 -47741724 - 5S rRNA rRNA -67 54 3 2486 67 0 3 chr1 234452773 234453070 -47740594 + AluY SINE Alu 1 296 -15 336 376 51 29 chr1 234453494 234453768 -47739896 - L2 LINE L2 -78 3194 2915 924 186 17 12 chr1 234454650 234454822 -47738842 - MER5A DNA MER1_type -6 183 11 488 181 0 67 chr1 234455046 234455151 -47738513 + MER5A DNA MER1_type 1 98 -91 1102 268 63 27 chr1 234455169 234455579 -47738085 - MER74B LTR ERVL -142 480 56 353 244 44 0 chr1 234455579 234455669 -47737995 + MER5A DNA MER1_type 92 185 -4 382 273 94 0 chr1 234455874 234456002 -47737662 + MIR3 SINE MIR 62 201 -7 296 283 167 8 chr1 234456012 234456132 -47737532 + MIR SINE MIR 118 256 -6 806 208 2 55 chr1 234456339 234456556 -47737108 + MIR SINE MIR 27 233 -29 249 217 60 36 chr1 234457153 234457236 -47736428 + MIR SINE MIR 47 131 -77 693 233 0 31 chr1 234457353 234457516 -47736148 + MIR SINE MIR 77 234 -28 265 330 73 9 chr1 234458716 234458825 -47734839 - L2 LINE L2 -7 3265 3150 219 69 0 0 chr1 234458973 234459002 -47734662 + (GA)n Simple_repeat Simple_repeat 1 29 0 182 273 94 47 chr1 234459304 234459432 -47734232 - MIR SINE MIR -117 145 12 230 288 45 0 chr1 234460397 234460463 -47733201 - L2 LINE L2 0 3313 3245 1086 104 0 0 chr1 234460538 234460673 -47732991 + AluSq/x SINE Alu 3 137 -175 2414 87 0 0 chr1 234460673 234460972 -47732692 + AluY SINE Alu 1 299 -12 2113 223 170 14 chr1 234461133 234461843 -47731821 - L2 LINE L2 -294 3019 2204 896 88 0 0 chr1 234461843 234461979 -47731685 + AluSp/q SINE Alu 174 309 0 226 178 0 0 chr1 234461979 234462024 -47731640 - L2 LINE L2 -1096 2218 2174 1656 186 82 12 chr1 234462124 234462508 -47731156 - L1ME LINE L1 -453 5713 5297 2196 139 0 0 chr1 234462508 234462811 -47730853 - AluSg SINE Alu -7 303 1 1656 186 82 12 chr1 234462811 234462839 -47730825 - L1ME LINE L1 -869 5297 5272 354 98 0 0 chr1 234462839 234462890 -47730774 + (TTCC)n Simple_repeat Simple_repeat 4 54 0 1712 187 7 23 chr1 234462891 234463196 -47730468 - AluJo SINE Alu -12 300 1 869 191 66 97 chr1 234463201 234463468 -47730196 - L1ME LINE L1 -869 5277 5023 2036 128 0 11 chr1 234463468 234463791 -47729873 - AluSx SINE Alu 0 323 4 869 191 66 97 chr1 234463791 234463915 -47729749 - L1ME LINE L1 -1123 5023 4897 1778 204 28 6 chr1 234465067 234465424 -47728240 - MLT1A1 LTR MaLR 0 365 1 1905 157 13 7 chr1 234465490 234465790 -47727874 - AluJo SINE Alu -10 302 1 205 267 40 10 chr1 234465947 234466048 -47727616 + (CA)n Simple_repeat Simple_repeat 2 105 0 743 308 35 6 chr1 234466920 234467166 -47726498 - MIR SINE MIR -1 261 10 227 197 0 45 chr1 234467357 234467423 -47726241 - L1MC4 LINE L1 -1332 6710 6648 3801 188 70 5 chr1 234467562 234468317 -47725347 - MER21B LTR ERV1 -48 815 12 351 325 38 19 chr1 234468332 234468489 -47725175 + MIR3 SINE MIR 42 201 -7 1724 188 46 13 chr1 234469388 234469760 -47723904 + MER63B DNA MER1_type 1 384 -52 1301 171 40 58 chr1 234470123 234470154 -47723510 - MER58B DNA MER1_type -2083 337 307 2236 127 0 10 chr1 234470154 234470468 -47723196 + AluJo SINE Alu 1 311 -1 1301 171 40 58 chr1 234470468 234470763 -47722901 - MER58B DNA MER1_type -2113 307 17 269 284 74 42 chr1 234470899 234470994 -47722670 - MIR SINE MIR -71 137 40 180 125 125 0 chr1 234471406 234471446 -47722218 + MIR3 SINE MIR 153 197 -11 296 248 50 78 chr1 234471494 234471712 -47721952 - L1MC4 LINE L1 -3 8039 7828 411 233 70 81 chr1 234471961 234472133 -47721531 + MIR SINE MIR 37 206 -56 1684 161 30 10 chr1 234472698 234472996 -47720668 + AluSg SINE Alu 1 304 -6 752 207 27 16 chr1 234473151 234473339 -47720325 - L1M4 LINE L1 -2338 3808 3619 * 1046 251 73 57 chr1 234473327 234473401 -47720263 - HAL1 LINE L1 -862 1645 1574 774 252 14 28 chr1 234473401 234473615 -47720049 - MER58C DNA MER1_type -4 211 1 1046 251 73 57 chr1 234473615 234474264 -47719400 - HAL1 LINE L1 -933 1574 910 1049 234 0 9 chr1 234474314 234474540 -47719124 - L1MDa LINE L1 -6314 226 3 204 324 0 5 chr1 234474700 234474776 -47718888 - MIR SINE MIR -101 107 32 * 318 255 51 31 chr1 234474754 234474852 -47718812 + MER5A DNA MER1_type 7 106 -83 1812 182 50 8 chr1 234475967 234476411 -47717253 - MLT2B2 LTR ERVL -3 512 1 306 219 95 29 chr1 234476922 234477059 -47716605 - MER104 DNA Tc2 0 180 35 1514 103 36 13 chr1 234477827 234478051 -47715613 + MER30 DNA MER1_type 1 229 -1 2049 143 3 3 chr1 234478100 234478394 -47715270 - AluJb SINE Alu -18 294 1 1862 145 0 67 chr1 234478509 234478840 -47714824 + AluJo SINE Alu 1 309 -3 283 184 96 64 chr1 234479002 234479127 -47714537 + MER20B DNA MER1_type 1 129 -654 979 285 81 20 chr1 234479774 234480181 -47713483 - MLT1J2 LTR MaLR -7 443 12 2685 150 109 7 chr1 234480286 234480825 -47712839 + L1MB5 LINE L1 5581 6174 0 403 312 32 16 chr1 234481475 234481600 -47712064 + L2 LINE L2 3187 3313 0 335 306 35 14 chr1 234483094 234483238 -47710426 + LTR67 LTR ERVL 411 557 0 534 315 68 29 chr1 234483625 234483933 -47709731 + LTR16C LTR ERVL 167 486 -5 653 183 56 40 chr1 234484129 234484160 -47709504 - FLAM_A SINE Alu -182 129 100 6319 106 181 20 chr1 234484160 234484935 -47708729 + MER52C LTR ERV1 1 1007 -271 261 57 0 0 chr1 234484935 234484970 -47708694 + (GGATG)n Simple_repeat Simple_repeat 4 38 0 6319 106 181 20 chr1 234484970 234485295 -47708369 + MER52C LTR ERV1 1007 1278 0 653 183 56 40 chr1 234485295 234485389 -47708275 - FLAM_A SINE Alu -211 100 2 1111 151 6 0 chr1 234486323 234486495 -47707169 - AluSg/x SINE Alu -6 306 134 2178 115 0 42 chr1 234486495 234486808 -47706856 - AluSx SINE Alu -12 300 1 1077 333 46 15 chr1 234487571 234488118 -47705546 + ERVL LTR ERVL 1714 2277 -3487 1394 312 65 3 chr1 234488246 234488832 -47704832 + ERVL LTR ERVL 3058 3679 -1975 516 243 46 23 chr1 234488898 234489071 -47704593 + ERVL LTR ERVL 3768 3944 -1710 443 297 171 38 chr1 234489093 234489463 -47704201 + L2 LINE L2 2644 3066 -206 542 238 219 12 chr1 234489464 234489624 -47704040 + MIR SINE MIR 9 201 -61 25 83 0 0 chr1 234489624 234489684 -47703980 + AT_rich Low_complexity Low_complexity 1 60 0 2050 122 28 0 chr1 234489688 234489974 -47703690 + AluSx SINE Alu 1 294 -18 330 227 0 93 chr1 234489974 234490071 -47703593 - L1MC4 LINE L1 -1340 6702 6615 40 37 0 0 chr1 234490102 234490156 -47703508 + AT_rich Low_complexity Low_complexity 1 54 0 320 275 12 12 chr1 234490298 234490378 -47703286 + L2 LINE L2 3193 3272 0 299 257 99 20 chr1 234490382 234490483 -47703181 + MIR SINE MIR 32 140 -122 401 204 0 0 chr1 234490503 234490583 -47703081 - MER116 DNA Mariner 0 80 1 1345 131 32 140 chr1 234491466 234491809 -47701855 + AluYb8 SINE Alu 1 306 -12 380 204 117 19 chr1 234491840 234491943 -47701721 - MIR3 SINE MIR -3 205 93 353 266 32 0 chr1 234492039 234492133 -47701531 + MIR SINE MIR 45 141 -67 225 353 83 15 chr1 234492386 234492519 -47701145 - L2 LINE L2 -8 3264 3123 229 250 0 0 chr1 234492569 234492625 -47701039 - L2 LINE L2 -299 2973 2918 654 251 0 31 chr1 234492638 234492801 -47700863 - MLT1J LTR MaLR 0 511 354 793 239 91 5 chr1 234492819 234493016 -47700648 + MIR SINE MIR 21 234 -28 745 222 116 91 chr1 234493037 234493379 -47700285 - MLT1J LTR MaLR -167 448 1 210 211 51 128 chr1 234493485 234493641 -47700023 - L2 LINE L2 -1024 2290 2147 2218 209 52 41 chr1 234494445 234495001 -47698663 - MLT1F1 LTR MaLR 0 567 6 632 263 71 33 chr1 234495473 234495713 -47697951 - MIR SINE MIR -6 256 8 1400 101 0 0 chr1 234496892 234497090 -47696574 - L1MA2 LINE L1 0 6304 6107 1197 33 0 20 chr1 234497290 234497440 -47696224 - L1PA5 LINE L1 0 6154 6008 510 370 17 17 chr1 234498005 234498235 -47695429 + L2 LINE L2 1146 1375 -1939 399 233 147 23 chr1 234498304 234498433 -47695231 + L2 LINE L2 3167 3311 -2 187 185 99 111 chr1 234498662 234498743 -47694921 + L2 LINE L2 3173 3252 -20 209 303 64 9 chr1 234498766 234498875 -47694789 + L2 LINE L2 2443 2557 -757 743 201 67 62 chr1 234498877 234499014 -47694650 - MER58A DNA MER1_type -2240 180 39 1386 196 0 51 chr1 234499014 234499152 -47694512 + AluJb SINE Alu 1 144 -173 255 79 0 0 chr1 234499152 234499190 -47694474 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 1386 196 0 51 chr1 234499190 234499383 -47694281 + AluJb SINE Alu 144 317 0 743 201 67 62 chr1 234499383 234499423 -47694241 - MER58A DNA MER1_type -2381 39 1 552 264 28 71 chr1 234499685 234499897 -47693767 + MIR SINE MIR 60 262 0 788 249 160 0 chr1 234499938 234500163 -47693501 + MIR SINE MIR 1 261 -1 1825 162 0 3 chr1 234500789 234500823 -47692841 - AluJb SINE Alu 0 540 507 1190 60 0 27 chr1 234500823 234501008 -47692656 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1825 162 0 3 chr1 234501008 234501330 -47692334 - AluJb SINE Alu -33 507 1 2196 136 147 8 chr1 234502581 234502955 -47690709 - MSTA LTR MaLR -2 426 1 434 270 68 92 chr1 234503001 234503556 -47690108 + L1MEd LINE L1 496 1037 -5082 192 294 0 0 chr1 234503727 234503778 -47689886 - L2 LINE L2 0 3313 3263 335 283 127 52 chr1 234503791 234503964 -47689700 - MER5A DNA MER1_type -3 186 1 861 195 75 0 chr1 234504475 234504675 -47688989 - MER66B LTR ERV1 0 486 272 206 184 41 41 chr1 234504923 234504972 -47688692 - MIR SINE MIR -116 146 98 245 243 156 41 chr1 234505253 234505376 -47688288 - MIR SINE MIR -75 133 20 4178 314 52 16 chr1 234506750 234506894 -47686770 - ERVL LTR ERVL -690 5074 4937 2323 116 101 25 chr1 234506894 234507292 -47686372 + MSTA LTR MaLR 1 428 0 4178 314 52 16 chr1 234507292 234508790 -47684874 - ERVL LTR ERVL -827 4937 3373 3822 314 84 43 chr1 234508816 234509605 -47684059 - ERVL LTR ERVL -2542 3222 2467 1847 132 21 0 chr1 234509605 234509894 -47683770 - AluSx SINE Alu -17 295 1 3822 314 84 43 chr1 234509894 234510581 -47683083 - ERVL LTR ERVL -3297 2467 1809 1364 145 41 99 chr1 234510581 234510744 -47682920 + MER33 DNA MER1_type 1 135 -2450 1544 154 10 48 chr1 234510744 234510881 -47682783 + AluJb SINE Alu 1 123 -189 2017 136 10 0 chr1 234510881 234511182 -47682482 + AluSx SINE Alu 1 304 -8 1544 154 10 48 chr1 234511182 234511336 -47682328 + AluJb SINE Alu 123 281 -31 1364 145 41 99 chr1 234511336 234511516 -47682148 + MER33 DNA MER1_type 135 324 0 3822 314 84 43 chr1 234511516 234512337 -47681327 - ERVL LTR ERVL -3955 1809 830 234 0 0 0 chr1 234512421 234512447 -47681217 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 1868 143 0 0 chr1 234512447 234512727 -47680937 - AluSx SINE Alu -32 280 1 228 67 0 0 chr1 234512987 234513017 -47680647 + (TC)n Simple_repeat Simple_repeat 1 30 0 455 331 64 14 chr1 234513302 234513583 -47680081 - LTR33 LTR ERVL 0 521 227 548 289 52 23 chr1 234513773 234513946 -47679718 - MIR SINE MIR -52 210 33 556 159 0 0 chr1 234514401 234514541 -47679123 + FLAM_A SINE Alu 28 167 0 453 238 38 19 chr1 234514674 234514834 -47678830 + MLT1K LTR MaLR 379 541 -47 1674 180 47 67 chr1 234515835 234516241 -47677423 - L1ME1 LINE L1 -5 6161 5764 2984 125 23 31 chr1 234516244 234516275 -47677389 - L1MA5 LINE L1 -23 6277 6247 2294 86 0 0 chr1 234516275 234516577 -47677087 - AluY SINE Alu -9 302 1 2984 125 23 31 chr1 234516577 234517058 -47676606 - L1MA5 LINE L1 -53 6247 5769 8070 34 11 14 chr1 234517063 234518849 -47674815 - L1PA8 LINE L1 0 6172 4384 416 333 191 14 chr1 234519759 234519969 -47673695 + MIR SINE MIR 6 252 -10 191 392 29 0 chr1 234519983 234520085 -47673579 - L2 LINE L2 -236 3036 2932 212 98 24 24 chr1 234520492 234520533 -47673131 + (TCC)n Simple_repeat Simple_repeat 1 41 0 2005 115 6 29 chr1 234521197 234521511 -47672153 - AluSx SINE Alu -5 307 1 261 119 0 0 chr1 234522101 234522143 -47671521 + (TG)n Simple_repeat Simple_repeat 1 42 0 235 372 25 33 chr1 234522951 234523072 -47670592 - MIR3 SINE MIR -39 169 50 213 361 58 16 chr1 234523192 234523383 -47670281 - L2 LINE L2 -219 3053 2855 756 170 57 31 chr1 234524075 234524234 -47669430 + MER3 DNA MER1_type 2 164 -45 202 328 0 0 chr1 234525109 234525173 -47668491 - L2 LINE L2 -3 3269 3206 450 0 0 0 chr1 234525244 234525294 -47668370 + (CA)n Simple_repeat Simple_repeat 2 51 0 518 253 169 7 chr1 234525938 234526092 -47667572 - MER5A DNA MER1_type -1 188 10 570 307 0 11 chr1 234526112 234526288 -47667376 + MER5B DNA MER1_type 5 178 0 187 300 0 0 chr1 234526627 234526677 -47666987 + L2 LINE L2 3262 3311 -2 319 296 45 0 chr1 234526735 234526823 -47666841 + MIR SINE MIR 85 176 -86 390 266 143 5 chr1 234527013 234527207 -47666457 - MIR SINE MIR -13 249 28 941 190 68 0 chr1 234529156 234529361 -47664303 - L1MD2 LINE L1 -2 6357 6139 527 78 13 0 chr1 234529436 234529513 -47664151 + (TTCC)n Simple_repeat Simple_repeat 4 81 0 189 0 0 0 chr1 234530550 234530571 -47663093 + (TC)n Simple_repeat Simple_repeat 2 22 0 351 0 60 48 chr1 234530573 234530656 -47663008 + (CA)n Simple_repeat Simple_repeat 2 85 0 360 0 0 0 chr1 234531182 234531222 -47662442 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr1 234532512 234532534 -47661130 + GC_rich Low_complexity Low_complexity 1 22 0 254 284 118 24 chr1 234532825 234532952 -47660712 + L2 LINE L2 3168 3306 -7 316 267 48 19 chr1 234533083 234533188 -47660476 + MIR3 SINE MIR 82 189 -19 308 287 35 0 chr1 234533266 234533353 -47660311 - L3 LINE CR1 -4 1573 1484 382 224 0 0 chr1 234533613 234533689 -47659975 + MIR SINE MIR 73 148 -114 183 338 175 0 chr1 234533796 234533876 -47659788 - MIR SINE MIR -83 125 32 465 291 41 15 chr1 234534415 234534611 -47659053 + L1MC/D LINE L1 5506 5706 -2102 440 264 49 7 chr1 234534899 234535043 -47658621 - MIR SINE MIR -48 214 65 2281 230 64 23 chr1 234535059 234535610 -47658054 + MER77 LTR ERV1 58 673 -4 1255 234 125 46 chr1 234535777 234536320 -47657344 + LTR1B LTR ERV1 30 615 -211 290 265 37 122 chr1 234536330 234536519 -47657145 + LTR28 LTR ERV1 848 1020 0 2427 105 103 5 chr1 234537584 234537974 -47655690 - MSTA LTR MaLR 0 428 1 1010 186 0 11 chr1 234538344 234538521 -47655143 + FAM SINE Alu 1 175 0 216 0 0 0 chr1 234538636 234538660 -47655004 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 205 345 109 17 chr1 234538740 234538859 -47654805 + L2 LINE L2 3138 3267 -5 997 180 77 10 chr1 234538896 234539090 -47654574 - MER3 DNA MER1_type -2 207 1 258 257 29 14 chr1 234539090 234539160 -47654504 - MER91B DNA MER1_type -119 71 1 1963 209 48 2 chr1 234540996 234541413 -47652251 + MER63B DNA MER1_type 1 436 0 364 258 101 51 chr1 234541543 234541760 -47651904 + LTR16A1 LTR ERVL 6 233 -224 299 254 25 34 chr1 234541943 234542061 -47651603 + AluJb SINE Alu 162 278 -24 1827 107 27 0 chr1 234542135 234542396 -47651268 - Tigger1 DNA MER2_type -1153 1265 998 242 211 0 0 chr1 234542391 234542443 -47651221 - Tigger1 DNA MER2_type -2366 52 1 * 2211 134 48 106 chr1 234542445 234542643 -47651021 + Tigger2a DNA MER2_type 1 209 -2499 1891 138 0 31 chr1 234542643 234542961 -47650703 - AluSq SINE Alu -5 308 1 2211 134 48 106 chr1 234542961 234543223 -47650441 + Tigger2a DNA MER2_type 209 434 0 211 283 17 0 chr1 234544158 234544218 -47649446 - MIR SINE MIR -64 144 84 1725 222 32 44 chr1 234544721 234545212 -47648452 - MER77 LTR ERV1 -6 599 54 1175 192 8 35 chr1 234546114 234546375 -47647289 - MER46C DNA MER2_type 0 338 85 270 396 40 0 chr1 234546502 234546603 -47647061 + L2 LINE L2 3168 3272 0 250 344 94 26 chr1 234546864 234547056 -47646608 + MIR3 SINE MIR 4 208 0 * 316 246 209 6 chr1 234546989 234547105 -47646559 - MER5A DNA MER1_type -1 188 37 1673 145 16 42 chr1 234547105 234547416 -47646248 + AluJo SINE Alu 1 303 -9 316 246 209 6 chr1 234547416 234547431 -47646233 - MER5A DNA MER1_type -152 37 26 2191 84 3 7 chr1 234547552 234547850 -47645814 + AluSc SINE Alu 1 297 -12 1000 138 26 0 chr1 234547864 234548016 -47645648 + MER30 DNA MER1_type 75 230 0 1295 75 84 37 chr1 234548016 234548230 -47645434 - L1P4 LINE L1 -630 5533 5310 535 192 93 17 chr1 234548223 234548395 -47645269 + L1MC/D LINE L1 2299 2483 -3901 * 287 72 0 0 chr1 234548400 234548449 -47645215 - L1PA13 LINE L1 0 6163 6120 1044 178 19 0 chr1 234548527 234548735 -47644929 - L1P LINE L1 -863 5283 5072 2334 183 38 10 chr1 234548751 234549254 -47644410 + L1MC/D LINE L1 2474 2990 -3392 936 157 0 7 chr1 234549251 234549404 -47644260 + L1MC/D LINE L1 5864 6015 -580 * 216 204 0 0 chr1 234549406 234549450 -47644214 + (TTA)n Simple_repeat Simple_repeat 2 45 0 186 183 0 83 chr1 234549641 234549701 -47643963 - MER5B DNA MER1_type -99 79 25 189 118 0 29 chr1 234549664 234549698 -47643966 + MER5A DNA MER1_type 131 163 -26 333 221 174 84 chr1 234549821 234550034 -47643630 - L1ME LINE L1 -296 5825 5594 411 264 201 0 chr1 234550371 234550515 -47643149 + MIR SINE MIR 31 203 -59 1562 171 28 0 chr1 234550573 234550859 -47642805 + AluSx SINE Alu 1 294 -18 331 315 0 11 chr1 234550872 234550964 -47642700 - L1MC4 LINE L1 -1339 6703 6613 40 37 0 0 chr1 234550987 234551041 -47642623 + AT_rich Low_complexity Low_complexity 1 54 0 320 275 12 12 chr1 234551183 234551263 -47642401 + L2 LINE L2 3193 3272 0 299 257 99 20 chr1 234551267 234551368 -47642296 + MIR SINE MIR 32 140 -122 401 203 0 0 chr1 234551394 234551468 -47642196 - MER116 DNA Mariner -6 74 1 300 154 0 0 chr1 234552442 234552494 -47641170 + CT-rich Low_complexity Low_complexity 3 54 0 1782 116 12 95 chr1 234552496 234552833 -47640831 - AluSp SINE Alu -4 309 1 654 259 78 25 chr1 234552895 234553138 -47640526 + MIR SINE MIR 6 261 -1 226 372 26 9 chr1 234553221 234553334 -47640330 - L2 LINE L2 -15 3298 3184 493 139 0 0 chr1 234553395 234553467 -47640197 + AluJ/FLAM SINE Alu 2 73 -239 4151 104 26 2 chr1 234553468 234554034 -47639630 - LTR19B LTR ERV1 0 580 1 1591 109 4 32 chr1 234554034 234554282 -47639382 + AluSg/x SINE Alu 68 308 -2 1361 191 14 14 chr1 234554416 234554698 -47638966 + AluJo SINE Alu 1 282 -30 729 173 0 50 chr1 234554871 234555010 -47638654 + FLAM_C SINE Alu 1 132 -1 229 174 65 0 chr1 234555189 234555235 -47638429 - MIR SINE MIR -108 154 106 329 62 21 0 chr1 234555735 234555783 -47637881 + (TG)n Simple_repeat Simple_repeat 2 50 0 302 253 110 68 chr1 234556030 234556176 -47637488 - MIR SINE MIR 0 262 111 1635 181 17 0 chr1 234557033 234557321 -47636343 - AluJo SINE Alu -17 295 3 221 209 0 0 chr1 234558031 234558074 -47635590 + MIR SINE MIR 189 231 -31 367 224 103 51 chr1 234558142 234558188 -47635476 - MIR3 SINE MIR -13 195 153 1006 188 0 0 chr1 234558188 234558374 -47635290 - MER5A DNA MER1_type -2 187 2 367 224 103 51 chr1 234558374 234558483 -47635181 - MIR3 SINE MIR -55 153 32 445 242 112 56 chr1 234558858 234559036 -47634628 + MIR3 SINE MIR 14 201 -7 1959 154 131 13 chr1 234559251 234559634 -47634030 + MSTA LTR MaLR 1 428 0 2076 142 0 0 chr1 234560119 234560430 -47633234 - AluSx SINE Alu -1 311 1 180 369 62 0 chr1 234560672 234560737 -47632927 + MIR3 SINE MIR 138 206 -2 * 236 337 241 0 chr1 234560730 234560929 -47632735 + L3 LINE CR1 1144 1390 -187 * 261 246 0 18 chr1 234560923 234560980 -47632684 - MIR3 SINE MIR -1 207 152 1947 128 0 3 chr1 234561014 234561322 -47632342 + AluSx SINE Alu 1 307 0 221 305 24 0 chr1 234561322 234561404 -47632260 + L3 LINE CR1 1405 1488 -89 184 303 13 53 chr1 234563879 234563955 -47629709 - MIR SINE MIR -179 83 11 608 248 52 14 chr1 234564739 234564919 -47628745 - MIR SINE MIR -35 173 4 186 288 63 63 chr1 234564921 234565032 -47628632 - L2 LINE L2 -75 3197 3087 375 41 0 0 chr1 234565179 234565228 -47628436 + (TG)n Simple_repeat Simple_repeat 1 49 0 3687 178 14 13 chr1 234565310 234566008 -47627656 - L1MB5 LINE L1 -8 6166 5468 1895 147 6 44 chr1 234566489 234566708 -47626956 - MLT1B LTR MaLR 0 390 187 2185 125 0 0 chr1 234566708 234567020 -47626644 - AluSq SINE Alu -1 312 1 1895 147 6 44 chr1 234567020 234567141 -47626523 - MLT1B LTR MaLR -203 187 63 1857 102 0 0 chr1 234567779 234568033 -47625631 - AluSx SINE Alu -13 299 46 237 224 61 0 chr1 234568254 234568303 -47625361 + L2 LINE L2 3134 3185 -87 3150 145 23 56 chr1 234569373 234569879 -47623785 - L1MB5 LINE L1 -12 6162 5678 1948 161 0 0 chr1 234569879 234570189 -47623475 - AluJb SINE Alu -2 310 1 3150 145 23 56 chr1 234570189 234570288 -47623376 - L1MB5 LINE L1 -496 5678 5577 2471 44 0 0 chr1 234570296 234570589 -47623075 - AluY SINE Alu -18 293 1 1407 257 87 25 chr1 234570800 234571282 -47622382 + MARNA DNA Mariner 58 569 -17 705 175 18 60 chr1 234572202 234572368 -47621296 - L1MB4 LINE L1 -1 6179 6021 2101 117 7 0 chr1 234572368 234572787 -47620877 + AluSx SINE Alu 1 421 0 4147 149 21 42 chr1 234572792 234573586 -47620078 - L1MB4 LINE L1 -145 6035 5258 2496 211 16 26 chr1 234573658 234573916 -47619748 - L1MB4 LINE L1 -910 5236 4977 2098 127 24 12 chr1 234573916 234574248 -47619416 - MER44D DNA MER2_type -3 606 1 2496 211 16 26 chr1 234574248 234574595 -47619069 - L1MB4 LINE L1 -1169 4977 4637 801 276 28 14 chr1 234574599 234574816 -47618848 - L1ME LINE L1 -487 5675 5456 234 224 52 0 chr1 234576368 234576426 -47617238 + L3 LINE CR1 913 973 -604 322 264 25 33 chr1 234576517 234576638 -47617026 - L1ME4a LINE L1 -3 6118 5999 25 65 0 0 chr1 234576680 234576726 -47616938 + AT_rich Low_complexity Low_complexity 1 46 0 599 206 81 117 chr1 234576768 234576991 -47616673 - MIR SINE MIR -46 216 2 669 272 30 26 chr1 234577002 234577270 -47616394 - L1ME4a LINE L1 -331 5790 5522 628 309 46 8 chr1 234577270 234577529 -47616135 + L3 LINE CR1 1085 1353 -224 389 311 122 0 chr1 234580011 234580197 -47613467 - MIR SINE MIR -14 248 42 231 217 0 0 chr1 234580286 234580332 -47613332 + L3b LINE CR1 1350 1395 -188 420 203 237 11 chr1 234581119 234581296 -47612368 + MIR SINE MIR 3 219 -43 514 225 145 13 chr1 234582105 234582270 -47611394 - MIR SINE MIR -37 225 42 396 0 0 0 chr1 234582270 234582314 -47611350 + (TTG)n Simple_repeat Simple_repeat 2 45 0 643 201 81 23 chr1 234583350 234583524 -47610140 - L1ME1 LINE L1 -7 6159 5976 2976 151 14 14 chr1 234583633 234584023 -47609641 - L1MB3 LINE L1 -4 6179 5787 2280 228 49 68 chr1 234584023 234584194 -47609470 - MER72 LTR ERV1 0 722 549 639 78 26 0 chr1 234584194 234584310 -47609354 + (TA)n Simple_repeat Simple_repeat 2 120 0 2280 228 49 68 chr1 234584310 234584874 -47608790 - MER72 LTR ERV1 -173 549 1 2976 151 14 14 chr1 234584874 234584993 -47608671 - L1MB3 LINE L1 -395 5788 5670 352 282 128 45 chr1 234585353 234585509 -47608155 - MIR SINE MIR -10 252 84 415 101 0 58 chr1 234585545 234585614 -47608050 - MADE1 DNA Mariner -15 65 1 582 157 0 10 chr1 234585785 234585887 -47607777 - L1MC5 LINE L1 -54 7907 7807 200 328 126 49 chr1 234586466 234586649 -47607015 - MIR SINE MIR -3 259 63 2206 77 11 0 chr1 234587547 234587834 -47605830 - AluY SINE Alu -5 306 17 302 87 0 0 chr1 234588587 234588633 -47605031 - MADE1 DNA Mariner -34 46 1 3397 105 4 4 chr1 234588924 234589409 -47604255 + MER31A LTR ERV1 1 485 0 852 244 176 16 chr1 234589457 234589919 -47603745 + L2 LINE L2 2772 3312 -1 279 239 65 11 chr1 234591047 234591139 -47602525 - MIR SINE MIR -95 113 17 431 280 106 34 chr1 234591742 234591949 -47601715 + MIR SINE MIR 17 238 -24 180 0 0 0 chr1 234591968 234591988 -47601676 + (CACCAT)n Simple_repeat Simple_repeat 4 23 0 553 182 0 0 chr1 234592178 234592266 -47601398 + AluJ/FLAM SINE Alu 1 88 -224 260 111 244 0 chr1 234592266 234592311 -47601353 + FLAM_A SINE Alu 55 110 -23 23 33 0 0 chr1 234592315 234592345 -47601319 + AT_rich Low_complexity Low_complexity 1 30 0 186 301 129 11 chr1 234592919 234593012 -47600652 + MIR SINE MIR 40 143 -65 913 281 149 22 chr1 234593105 234593549 -47600115 - MARNA DNA Mariner -75 511 12 546 169 227 0 chr1 234593692 234593846 -47599818 - MER5A DNA MER1_type 0 189 1 536 237 51 19 chr1 234593850 234594006 -47599658 - MIR3 SINE MIR -25 183 23 3315 140 15 30 chr1 234594178 234594779 -47598885 - L1MB3 LINE L1 -7 6176 5585 1964 145 26 22 chr1 234594789 234595100 -47598564 - AluJo SINE Alu 0 312 1 1580 120 31 2 chr1 234595486 234595817 -47597847 - LTR54 LTR ERV1 0 510 85 2258 125 0 0 chr1 234598065 234598369 -47595295 - AluSx SINE Alu -8 304 1 226 336 21 14 chr1 234598629 234598769 -47594895 - LTR16C LTR ERVL -2 489 349 636 191 93 72 chr1 234599809 234600038 -47593626 - MLT1H1 LTR MaLR -15 540 307 1272 140 98 59 chr1 234600038 234600345 -47593319 + MER33 DNA MER1_type 1 319 -5 338 331 54 38 chr1 234600606 234600920 -47592744 - L2 LINE L2 -822 2492 2174 963 278 112 17 chr1 234601414 234601832 -47591832 - MLT1L LTR MaLR -40 575 118 220 179 0 0 chr1 234601936 234601975 -47591689 - MIR SINE MIR -9 253 215 25 0 0 0 chr1 234604246 234604271 -47589393 + AT_rich Low_complexity Low_complexity 1 25 0 219 259 52 0 chr1 234604347 234604405 -47589259 - L2 LINE L2 -5 3267 3207 407 250 99 35 chr1 234604484 234604656 -47589008 + MER5A DNA MER1_type 7 189 0 275 189 19 0 chr1 234604688 234604741 -47588923 - L2 LINE L2 -251 3062 3009 264 195 226 54 chr1 234604928 234605064 -47588600 - MIR SINE MIR -30 178 31 1913 153 0 44 chr1 234605068 234605242 -47588422 - AluJb SINE Alu -5 307 152 2122 111 3 24 chr1 234605242 234605539 -47588125 - AluSx SINE Alu -21 291 1 1913 153 0 44 chr1 234605539 234605685 -47587979 - AluJb SINE Alu -160 152 1 182 271 0 0 chr1 234606481 234606529 -47587135 - L2 LINE L2 -86 3186 3139 249 294 7 139 chr1 234607286 234607498 -47586166 + MIR3 SINE MIR 3 184 -78 1010 272 10 16 chr1 234607955 234608267 -47585397 - L2 LINE L2 0 3313 3004 2601 247 162 17 chr1 234608280 234608345 -47585319 - L2 LINE L2 -705 2609 2555 705 181 0 38 chr1 234608345 234608478 -47585186 - FLAM_C SINE Alu -5 128 1 2601 247 162 17 chr1 234608478 234609508 -47584156 - L2 LINE L2 -759 2555 1355 1597 153 63 4 chr1 234609536 234609791 -47583873 + AluJo SINE Alu 24 293 -19 991 224 57 41 chr1 234609830 234610218 -47583446 + L1MC5 LINE L1 7500 7893 -68 675 274 52 33 chr1 234610247 234610517 -47583147 - L2 LINE L2 -1946 1368 1094 438 260 63 16 chr1 234611457 234611584 -47582080 + MIR SINE MIR 2 134 -128 1738 182 7 3 chr1 234611604 234611901 -47581763 - AluJb SINE Alu -14 298 1 210 246 0 18 chr1 234612334 234612391 -47581273 + CT-rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr1 234612410 234612431 -47581233 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 234612575 234612598 -47581066 + AT_rich Low_complexity Low_complexity 1 23 0 966 199 11 0 chr1 234612598 234612774 -47580890 - AluJo SINE Alu -23 289 112 1410 159 95 18 chr1 234612779 234613062 -47580602 - L1M3 LINE L1 -603 5580 5276 922 259 140 20 chr1 234613132 234613583 -47580081 - L1ME LINE L1 -344 5818 5314 29 0 0 0 chr1 234613595 234613624 -47580040 + AT_rich Low_complexity Low_complexity 1 29 0 474 251 0 9 chr1 234613693 234613811 -47579853 - L1ME1 LINE L1 -5 6161 6058 291 95 0 0 chr1 234613811 234613853 -47579811 - MER3 DNA MER1_type -160 49 8 2964 198 57 27 chr1 234613853 234614190 -47579474 - L1ME1 LINE L1 -150 6016 5691 2297 48 0 4 chr1 234614190 234614459 -47579205 - AluY SINE Alu -17 294 27 2964 198 57 27 chr1 234614459 234614940 -47578724 - L1ME1 LINE L1 -475 5691 5168 213 39 0 0 chr1 234615447 234615473 -47578191 + (TG)n Simple_repeat Simple_repeat 1 26 0 2039 168 0 0 chr1 234615481 234615784 -47577880 - AluJb SINE Alu -9 303 1 243 198 85 28 chr1 234615893 234615999 -47577665 + L1MC4a LINE L1 4150 4261 -1885 5167 192 55 41 chr1 234616001 234617946 -47575718 - L1MD1 LINE L1 -1 6241 4265 768 168 0 81 chr1 234617947 234618120 -47575544 - FRAM SINE Alu -18 158 1 769 168 0 8 chr1 234618180 234618305 -47575359 - FLAM_C SINE Alu -18 125 2 3993 232 27 75 chr1 234618306 234618892 -47574772 - L1MD1 LINE L1 -1866 4280 3668 652 206 0 8 chr1 234618892 234619018 -47574646 - FLAM_A SINE Alu -7 126 2 3993 232 27 75 chr1 234619018 234619908 -47573756 - L1MD1 LINE L1 -2478 3668 2874 1525 176 7 30 chr1 234619916 234620211 -47573453 + AluJo SINE Alu 1 288 -24 25 0 0 0 chr1 234620211 234620236 -47573428 + AT_rich Low_complexity Low_complexity 1 25 0 1658 189 0 31 chr1 234620244 234620535 -47573129 + AluJb SINE Alu 6 287 -25 24 32 0 0 chr1 234620535 234620566 -47573098 + AT_rich Low_complexity Low_complexity 1 31 0 349 272 90 56 chr1 234620599 234620898 -47572766 + L1MC4a LINE L1 4374 4691 -1455 302 267 48 9 chr1 234620909 234621014 -47572650 + L1MC4a LINE L1 4736 4844 -1302 1301 145 4 62 chr1 234621182 234621423 -47572241 + AluJb SINE Alu 84 310 -2 2410 109 24 24 chr1 234621717 234622092 -47571572 + THE1C LTR MaLR 1 375 0 1075 241 134 62 chr1 234622100 234622499 -47571165 + L1MC4a LINE L1 5385 5841 -280 2383 76 0 13 chr1 234622499 234622802 -47570862 + AluY SINE Alu 2 300 -11 1075 241 134 62 chr1 234622802 234622984 -47570680 + L1MC4a LINE L1 5841 6008 -113 871 169 0 0 chr1 234624232 234624374 -47569290 - FLAM_C SINE Alu 0 143 2 220 163 47 0 chr1 234624385 234624428 -47569236 + MIR SINE MIR 110 154 -108 1767 181 3 3 chr1 234624437 234624719 -47568945 + AluJo SINE Alu 1 282 -30 465 200 36 18 chr1 234624888 234624998 -47568666 - L1MC5 LINE L1 -68 7893 7782 * 1103 234 67 107 chr1 234624991 234625770 -47567894 - L1MC5 LINE L1 -922 7039 6231 1284 104 134 0 chr1 234625770 234625971 -47567693 - MER30 DNA MER1_type -2 228 1 1103 234 67 107 chr1 234625971 234626087 -47567577 - L1MC5 LINE L1 -1730 6231 6112 2342 104 0 0 chr1 234626087 234626384 -47567280 - AluSx SINE Alu -11 301 5 1103 234 67 107 chr1 234626384 234626525 -47567139 - L1MC5 LINE L1 -1849 6112 6030 2064 142 3 3 chr1 234626525 234626827 -47566837 - AluSx SINE Alu -10 302 1 1103 234 67 107 chr1 234626827 234626999 -47566665 - L1MC5 LINE L1 -1931 6030 5853 512 215 8 50 chr1 234627010 234627131 -47566533 - L1MC5 LINE L1 -2148 5660 5545 2003 105 35 21 chr1 234627136 234627421 -47566243 - AluSx SINE Alu -23 289 1 222 320 130 10 chr1 234627556 234627656 -47566008 - MIR SINE MIR -60 148 37 186 43 0 0 chr1 234627930 234627953 -47565711 + (T)n Simple_repeat Simple_repeat 1 23 0 521 227 145 31 chr1 234629074 234629311 -47564353 + MIR SINE MIR 6 261 -1 266 280 27 67 chr1 234629984 234630134 -47563530 - MIR SINE MIR -56 206 63 1921 115 4 4 chr1 234631995 234632288 -47561376 - AluSg SINE Alu 0 312 20 455 261 57 70 chr1 234632296 234632526 -47561138 - MIR SINE MIR -7 255 29 249 33 0 0 chr1 234633511 234633541 -47560123 + (TA)n Simple_repeat Simple_repeat 2 31 0 2065 154 7 0 chr1 234633541 234633847 -47559817 - AluJb SINE Alu -4 308 1 1661 167 88 56 chr1 234633982 234634051 -47559613 - L1MB7 LINE L1 -1 6183 6118 2222 98 0 3 chr1 234634051 234634338 -47559326 + AluSx SINE Alu 1 286 -26 215 61 30 0 chr1 234634338 234634371 -47559293 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 1661 167 88 56 chr1 234634371 234634782 -47558882 - L1MB7 LINE L1 -65 6119 5573 267 260 15 13 chr1 234635825 234635967 -47557697 + L1ME LINE L1 5672 5809 -321 210 296 29 87 chr1 234638929 234639101 -47554563 + L2 LINE L2 2316 2477 -837 186 243 214 0 chr1 234639654 234639724 -47553940 - L2 LINE L2 -2 3311 3227 932 239 19 19 chr1 234639821 234640026 -47553638 + MER58A DNA MER1_type 1 205 -19 253 328 68 6 chr1 234640137 234640314 -47553350 - L2 LINE L2 -244 3028 2841 314 325 48 0 chr1 234640830 234640956 -47552708 - L2 LINE L2 -1282 2032 1901 2331 113 0 0 chr1 234641115 234641416 -47552248 + AluSx SINE Alu 1 301 -11 641 270 111 77 chr1 234641651 234642181 -47551483 - MLT1K LTR MaLR -22 566 19 264 273 57 135 chr1 234642208 234642505 -47551159 - L2 LINE L2 -50 3222 2949 1602 208 80 0 chr1 234642524 234642860 -47550804 - MER89 LTR ERV1 0 559 197 280 232 37 0 chr1 234642833 234642915 -47550749 - MER89 LTR ERV1 -470 89 5 * 2350 101 3 3 chr1 234643452 234643762 -47549902 - AluSx SINE Alu -5 307 2 800 338 13 12 chr1 234643930 234644367 -47549297 + L2 LINE L2 2622 3060 -253 2943 166 75 25 chr1 234644432 234645041 -47548623 - L1MC1 LINE L1 -19 6314 5675 331 309 107 28 chr1 234645041 234645219 -47548445 + L2 LINE L2 3119 3310 -3 453 307 18 12 chr1 234645626 234645792 -47547872 - MIR SINE MIR -6 256 90 203 244 0 0 chr1 234646111 234646156 -47547508 - MER5A DNA MER1_type -107 82 38 441 0 0 0 chr1 234646303 234646352 -47547312 + (TG)n Simple_repeat Simple_repeat 2 50 0 389 279 129 39 chr1 234646606 234646839 -47546825 - L3 LINE CR1 -170 1407 1154 2117 117 0 0 chr1 234647435 234647726 -47545938 + AluSx SINE Alu 1 291 -21 2279 186 52 31 chr1 234647728 234648282 -47545382 - L1MB5 LINE L1 -34 6140 5575 634 276 6 29 chr1 234648344 234648514 -47545150 + MIR3 SINE MIR 14 179 -29 227 195 0 0 chr1 234649244 234649285 -47544379 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 294 316 61 26 chr1 234649306 234649420 -47544244 - L2 LINE L2 -24 3289 3172 549 326 55 66 chr1 234649543 234649839 -47543825 - L2 LINE L2 -343 2971 2680 409 73 0 0 chr1 234649839 234649894 -47543770 + L1MA5 LINE L1 6244 6298 -2 549 326 55 66 chr1 234649894 234650054 -47543610 - L2 LINE L2 -634 2680 2520 1124 205 23 5 chr1 234651148 234651363 -47542301 + MER20 DNA MER1_type 1 219 0 211 373 9 18 chr1 234653514 234653624 -47540040 - MIR SINE MIR -31 231 123 231 36 0 0 chr1 234654873 234654901 -47538763 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 210 268 0 0 chr1 234655116 234655239 -47538425 + (CA)n Simple_repeat Simple_repeat 1 123 0 278 296 65 9 chr1 234655865 234655973 -47537691 + MIR SINE MIR 30 143 -65 524 197 218 0 chr1 234656886 234657028 -47536636 + MER5A DNA MER1_type 11 183 -6 208 333 71 10 chr1 234658282 234658381 -47535283 - L2 LINE L2 -1 3312 3208 1989 116 10 42 chr1 234658405 234658715 -47534949 - AluSx SINE Alu -12 300 1 2282 77 0 3 chr1 234658722 234659020 -47534644 - AluY SINE Alu -14 297 1 186 337 12 35 chr1 234659460 234659546 -47534118 - L2 LINE L2 0 3313 3230 * 201 323 194 0 chr1 234659528 234659621 -47534043 - MIR SINE MIR -66 142 32 251 330 129 36 chr1 234659764 234659958 -47533706 - MIR SINE MIR -6 256 45 192 40 0 0 chr1 234660532 234660557 -47533107 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2263 57 3 3 chr1 234660564 234660847 -47532817 - AluY SINE Alu -28 283 1 253 302 129 9 chr1 234661192 234661308 -47532356 + MER5B DNA MER1_type 49 178 0 874 255 8 52 chr1 234662320 234662571 -47531093 + MIR SINE MIR 2 241 -21 278 246 14 0 chr1 234662961 234663030 -47530634 + CT-rich Low_complexity Low_complexity 1 70 0 * 294 263 32 0 chr1 234663007 234663102 -47530562 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 533 302 140 21 chr1 234663294 234663960 -47529704 + L2 LINE L2 2468 3253 -19 283 260 94 10 chr1 234664415 234664511 -47529153 - L2 LINE L2 -1 3271 3168 288 295 179 17 chr1 234664632 234664805 -47528859 + MIR SINE MIR 14 214 -48 301 209 0 16 chr1 234665375 234665444 -47528220 + MER5A DNA MER1_type 111 189 0 232 195 18 44 chr1 234666313 234666426 -47527238 + CT-rich Low_complexity Low_complexity 3 112 0 260 226 0 48 chr1 234670668 234670730 -47522934 - MIR3 SINE MIR -21 187 129 627 344 37 0 chr1 234671326 234671567 -47522097 + MIR SINE MIR 13 262 0 312 220 48 139 chr1 234671652 234671861 -47521803 + L3b LINE CR1 1218 1407 -176 536 268 67 22 chr1 234673129 234673308 -47520356 + MIR SINE MIR 76 262 0 2234 114 0 0 chr1 234677047 234677353 -47516311 + AluSc SINE Alu 1 306 -3 453 303 25 19 chr1 234677485 234677647 -47516017 - MER5B DNA MER1_type -15 163 1 205 346 39 0 chr1 234678414 234678492 -47515172 + L3b LINE CR1 1303 1383 -200 202 342 26 0 chr1 234678895 234678971 -47514693 - MIR SINE MIR -68 140 63 291 295 13 0 chr1 234679684 234679762 -47513902 - MIR SINE MIR -59 149 71 473 299 109 20 chr1 234680062 234680263 -47513401 - MIR SINE MIR -30 232 14 183 270 61 92 chr1 234680260 234680423 -47513241 - MIR SINE MIR -83 179 22 * 303 283 11 22 chr1 234680844 234680936 -47512728 - MIR3 SINE MIR -13 195 105 471 301 37 6 chr1 234681637 234681800 -47511864 - MIR3 SINE MIR -8 200 33 352 268 24 16 chr1 234682884 234683011 -47510653 + CT-rich Low_complexity Low_complexity 4 131 0 420 277 101 13 chr1 234683095 234683254 -47510410 - MER5B DNA MER1_type -5 173 1 580 303 67 6 chr1 234686881 234687059 -47506605 + MIR SINE MIR 74 262 0 427 282 39 26 chr1 234689482 234689638 -47504026 - MIR3 SINE MIR -45 163 6 974 291 18 7 chr1 234690750 234691035 -47502629 - LTR33 LTR ERVL -233 288 1 332 308 33 3 chr1 234691561 234691690 -47501974 - L1MC3 LINE L1 -1127 6702 6536 246 316 48 6 chr1 234693952 234694120 -47499544 + CT-rich Low_complexity Low_complexity 5 179 0 204 222 37 0 chr1 234694614 234694668 -47498996 + C-rich Low_complexity Low_complexity 2 57 0 234 292 183 62 chr1 234696892 234697132 -47496532 - L2 LINE L2 -5 3267 2999 189 0 0 0 chr1 234697560 234697581 -47496083 + (CAGGC)n Simple_repeat Simple_repeat 2 22 0 258 105 0 0 chr1 234697817 234697855 -47495809 + (A)n Simple_repeat Simple_repeat 1 38 0 640 130 0 0 chr1 234701899 234701999 -47491665 - AluSg/x SINE Alu -1 308 209 1631 162 0 26 chr1 234702119 234702391 -47491273 + AluJb SINE Alu 35 299 -13 357 24 0 0 chr1 234702570 234702612 -47491052 + (TG)n Simple_repeat Simple_repeat 2 43 0 261 221 0 0 chr1 234704542 234704610 -47489054 + (CCA)n Simple_repeat Simple_repeat 3 70 0 1288 114 5 0 chr1 234707917 234708101 -47485563 + AluSq SINE Alu 126 310 -3 290 296 0 0 chr1 234708284 234708355 -47485309 + (TG)n Simple_repeat Simple_repeat 2 72 0 183 184 0 0 chr1 234708551 234708589 -47485075 + (CGG)n Simple_repeat Simple_repeat 2 39 0 222 303 0 45 chr1 234713469 234713535 -47480129 - L2 LINE L2 0 3272 3210 1327 183 0 13 chr1 234714422 234714652 -47479012 + AluJo SINE Alu 73 299 -13 271 117 0 33 chr1 234714652 234714712 -47478952 + (GGGGA)n Simple_repeat Simple_repeat 3 60 0 483 315 233 9 chr1 234714749 234715211 -47478453 - L2 LINE L2 -124 3189 2638 1654 189 14 3 chr1 234717548 234717839 -47475825 + AluJb SINE Alu 1 294 -18 2339 94 0 3 chr1 234717858 234718167 -47475497 + AluSx SINE Alu 1 308 -4 237 267 85 95 chr1 234718869 234719019 -47474645 + MIR SINE MIR 19 168 -62 1914 85 4 0 chr1 234719037 234719284 -47474380 + AluSq SINE Alu 1 248 -65 199 369 106 31 chr1 234719524 234719684 -47473980 - L2 LINE L2 -5 3267 3096 477 224 36 85 chr1 234720637 234720802 -47472862 - MIR3 SINE MIR -27 181 25 189 0 0 0 chr1 234723322 234723343 -47470321 + (CCCTG)n Simple_repeat Simple_repeat 5 25 0 212 210 17 185 chr1 234723349 234723468 -47470196 + MIR SINE MIR 88 187 -21 324 70 0 0 chr1 234726706 234726749 -47466915 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 251 295 0 0 chr1 234726786 234726847 -47466817 - L2 LINE L2 -60 3212 3152 505 322 19 53 chr1 234728709 234728917 -47464747 - MIR3 SINE MIR -5 203 3 232 236 91 0 chr1 234730478 234730533 -47463131 + L2 LINE L2 3254 3313 0 2185 104 0 43 chr1 234730604 234730930 -47462734 + AluSx SINE Alu 1 312 0 196 299 72 21 chr1 234731403 234731500 -47462164 + MIR SINE MIR 44 145 -63 1980 130 0 37 chr1 234731508 234731543 -47462121 - AluJb SINE Alu -1 311 276 294 29 0 0 chr1 234731543 234731578 -47462086 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1980 130 0 37 chr1 234731578 234731864 -47461800 - AluJb SINE Alu -36 276 2 348 346 98 20 chr1 234731969 234732223 -47461441 + L2 LINE L2 2630 2903 -411 662 211 0 18 chr1 234732618 234732789 -47460875 + (CA)n Simple_repeat Simple_repeat 1 168 0 1733 176 3 10 chr1 234732870 234733177 -47460487 - AluJo SINE Alu -7 305 1 180 254 169 0 chr1 234733232 234733303 -47460361 + L2 LINE L2 3190 3272 0 191 89 0 71 chr1 234733961 234734017 -47459647 + (CCCCCA)n Simple_repeat Simple_repeat 3 54 0 426 141 0 14 chr1 234734501 234734572 -47459092 + MER5A DNA MER1_type 2 71 -118 893 108 0 31 chr1 234734605 234734734 -47458930 + AluSq/x SINE Alu 1 125 -188 499 162 133 9 chr1 234734735 234734840 -47458824 + MER5A DNA MER1_type 68 185 -4 298 321 86 70 chr1 234735215 234735364 -47458300 - MIR SINE MIR -6 256 100 2268 85 0 0 chr1 234735364 234735657 -47458007 - AluSx SINE Alu -19 293 1 298 321 86 70 chr1 234735657 234735750 -47457914 - MIR SINE MIR -162 100 10 652 224 79 12 chr1 234736053 234736218 -47457446 + MIR SINE MIR 76 251 -11 221 291 68 68 chr1 234736457 234736574 -47457090 + L2 LINE L2 3191 3307 -6 212 237 186 0 chr1 234737532 234737591 -47456073 - MIR3 SINE MIR -7 201 132 2257 78 3 3 chr1 234739093 234739388 -47454276 - AluY SINE Alu -16 295 1 640 177 6 73 chr1 234740456 234740620 -47453044 - MER20 DNA MER1_type -31 188 36 1320 141 52 37 chr1 234740736 234741006 -47452658 - MER58B DNA MER1_type 0 341 68 760 234 40 23 chr1 234741211 234741386 -47452278 - MER45A DNA AcHobo 0 178 1 396 300 10 0 chr1 234741482 234741582 -47452082 + MER91A DNA MER1_type 32 132 -64 206 250 83 130 chr1 234741691 234741907 -47451757 - L2 LINE L2 -218 3054 2849 235 296 42 0 chr1 234741909 234741980 -47451684 + L2 LINE L2 3240 3313 0 1879 152 0 3 chr1 234742133 234742430 -47451234 + AluJb SINE Alu 5 300 -12 398 358 84 40 chr1 234742486 234743160 -47450504 - L2 LINE L2 -120 3152 2458 1548 184 26 15 chr1 234743195 234743537 -47450127 + MLT1A1 LTR MaLR 20 365 0 1652 166 33 12 chr1 234743611 234743948 -47449716 - MLT2C1 LTR ERVL -53 344 1 596 310 112 71 chr1 234744049 234744735 -47448929 + L2 LINE L2 2575 3272 0 201 267 0 0 chr1 234744791 234744836 -47448828 - L2 LINE L2 -18 3295 3251 394 283 0 8 chr1 234744844 234744964 -47448700 - LTR67 LTR ERVL 0 557 439 356 325 173 16 chr1 234745123 234745314 -47448350 - MIR SINE MIR -41 221 1 251 300 45 9 chr1 234745762 234745872 -47447792 + MIR SINE MIR 20 133 -75 340 265 53 68 chr1 234746436 234746568 -47447096 - L2 LINE L2 0 3272 3143 409 263 37 97 chr1 234746601 234746818 -47446846 - MIR SINE MIR -46 216 13 417 267 236 0 chr1 234746888 234747083 -47446581 - MIR SINE MIR -7 255 15 1175 160 5 11 chr1 234747868 234748056 -47445608 - AluJb SINE Alu -37 275 89 327 282 171 41 chr1 234748059 234748229 -47445435 + MIR SINE MIR 70 261 -1 322 331 115 0 chr1 234749469 234749617 -47444047 - MIR3 SINE MIR -14 194 30 198 71 0 0 chr1 234750485 234750513 -47443151 + (CCG)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr1 234750574 234750595 -47443069 + GC_rich Low_complexity Low_complexity 1 21 0 194 373 0 0 chr1 234753129 234753188 -47440476 + L3 LINE CR1 1498 1556 -21 367 291 10 82 chr1 234755098 234755294 -47438370 - MIR SINE MIR -80 182 1 288 192 96 41 chr1 234756020 234756093 -47437571 + L2 LINE L2 3234 3310 -3 456 19 0 0 chr1 234756163 234756216 -47437448 + (TG)n Simple_repeat Simple_repeat 2 54 0 459 35 0 0 chr1 234756537 234756594 -47437070 + (CA)n Simple_repeat Simple_repeat 2 58 0 324 239 45 0 chr1 234756629 234756696 -47436968 - L1MCa LINE L1 -4349 2077 2008 203 189 0 0 chr1 234756965 234757002 -47436662 - L2 LINE L2 -12 3301 3265 338 368 22 2 chr1 234757250 234757403 -47436261 - MIR SINE MIR -31 177 45 351 0 0 0 chr1 234757534 234757573 -47436091 + (TG)n Simple_repeat Simple_repeat 1 39 0 2457 125 3 32 chr1 234757648 234757882 -47435782 + MER47A DNA MER2_type 1 221 -2102 2234 99 0 0 chr1 234757882 234758174 -47435490 - AluSq SINE Alu -21 292 1 2457 125 3 32 chr1 234758174 234758316 -47435348 + MER47A DNA MER2_type 221 366 0 323 314 138 38 chr1 234758401 234758691 -47434973 - L2 LINE L2 -16 3256 2938 322 265 3 3 chr1 234760689 234760790 -47432874 - MIR SINE MIR -65 143 68 671 228 161 6 chr1 234760833 234761013 -47432651 - MER3 DNA MER1_type 0 209 2 180 0 0 0 chr1 234762245 234762265 -47431399 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2098 93 0 0 chr1 234762271 234762549 -47431115 - AluSx SINE Alu -14 298 21 254 369 40 9 chr1 234762770 234762920 -47430744 - MER5A DNA MER1_type -5 184 4 483 352 11 11 chr1 234762922 234763104 -47430560 + MIR SINE MIR 8 189 -73 271 248 70 0 chr1 234764179 234764265 -47429399 + MIR SINE MIR 61 139 -69 558 321 67 0 chr1 234764357 234764550 -47429114 - MIR SINE MIR -11 251 46 400 318 39 8 chr1 234764768 234764897 -47428767 + L2 LINE L2 3138 3270 -2 843 180 6 6 chr1 234764943 234765110 -47428554 - MER3 DNA MER1_type -87 122 3 950 215 89 5 chr1 234767224 234767438 -47426226 + MIR SINE MIR 21 252 -10 262 193 0 0 chr1 234767506 234767563 -47426101 + L2 LINE L2 3215 3271 -1 2405 83 0 6 chr1 234767688 234768001 -47425663 + AluY SINE Alu 1 311 0 186 356 14 14 chr1 234769436 234769509 -47424155 + MIR SINE MIR 45 117 -91 560 323 41 2 chr1 234770072 234770296 -47423368 + MIR SINE MIR 14 251 -11 358 203 153 0 chr1 234770303 234770404 -47423260 + MIR SINE MIR 69 185 -65 724 295 80 86 chr1 234770462 234770599 -47423065 - L2 LINE L2 -69 3244 3108 1843 162 3 10 chr1 234770599 234770913 -47422751 + AluSx SINE Alu 1 312 0 724 295 80 86 chr1 234770913 234771500 -47422164 - L2 LINE L2 -205 3108 2495 255 290 60 20 chr1 234774202 234774302 -47419362 - L2 LINE L2 -1 3271 3168 22 35 0 0 chr1 234774744 234774773 -47418891 + AT_rich Low_complexity Low_complexity 1 29 0 2508 67 0 3 chr1 234774900 234775213 -47418451 + AluSx SINE Alu 1 312 0 583 309 19 3 chr1 234775832 234775990 -47417674 + MIR SINE MIR 17 172 -67 365 0 0 22 chr1 234776255 234776301 -47417363 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 601 257 47 6 chr1 234776436 234776607 -47417057 - MIR SINE MIR -63 199 22 2292 97 3 0 chr1 234777970 234778270 -47415394 + AluSx SINE Alu 1 301 -11 674 278 11 31 chr1 234782230 234782421 -47411243 - MIR3 SINE MIR -9 199 13 200 339 79 63 chr1 234783569 234783696 -47409968 + L3 LINE CR1 1446 1574 -3 2223 98 3 3 chr1 234785756 234786051 -47407613 - AluSq SINE Alu -18 295 1 182 200 125 0 chr1 234786590 234786630 -47407034 + MIR SINE MIR 119 163 -99 218 296 136 0 chr1 234786860 234786941 -47406723 - MIR SINE MIR -96 112 21 205 319 14 0 chr1 234787038 234787110 -47406554 + MER5B DNA MER1_type 1 73 -105 1841 251 118 27 chr1 234787127 234787403 -47406261 + L1MC4 LINE L1 6719 6969 -1073 498 160 57 9 chr1 234787403 234787509 -47406155 + L1PA13 LINE L1 6052 6162 -1 1841 251 118 27 chr1 234787509 234787781 -47405883 + L1MC4 LINE L1 6969 7215 -827 333 0 0 0 chr1 234787781 234787818 -47405846 + (CA)n Simple_repeat Simple_repeat 2 38 0 1841 251 118 27 chr1 234787818 234787890 -47405774 + L1MC4 LINE L1 7215 7279 -763 1875 130 78 0 chr1 234787890 234788174 -47405490 + AluSx SINE Alu 1 306 -6 1841 251 118 27 chr1 234788174 234788431 -47405233 + L1MC4 LINE L1 7279 7678 -364 1463 173 0 4 chr1 234788478 234788715 -47404949 - MER46A DNA MER2_type 0 236 1 2020 108 7 7 chr1 234788751 234789029 -47404635 + AluSq SINE Alu 1 278 -35 904 141 7 0 chr1 234789143 234789278 -47404386 - FLAM_C SINE Alu -7 136 1 246 238 106 93 chr1 234789655 234789773 -47403891 + MIR3 SINE MIR 31 153 -55 440 303 90 17 chr1 234789773 234790007 -47403657 - MER112 DNA MER1_type -3 253 3 246 238 106 93 chr1 234790007 234790039 -47403625 + MIR3 SINE MIR 153 183 -25 272 153 136 0 chr1 234790763 234790822 -47402842 - MER63 DNA MER1_type 0 1062 996 2693 183 7 27 chr1 234790847 234791447 -47402217 - L1 LINE L1 -858 5288 4701 1250 170 81 33 chr1 234791450 234791721 -47401943 - AluJo SINE Alu -22 290 7 408 281 25 16 chr1 234791723 234791844 -47401820 + L1MC4a LINE L1 5768 5889 -1919 29 47 0 0 chr1 234791894 234791937 -47401727 + AT_rich Low_complexity Low_complexity 1 43 0 663 316 98 32 chr1 234791948 234792264 -47401400 + L1M4 LINE L1 4973 5309 -837 1043 201 0 0 chr1 234792264 234792438 -47401226 + FAM SINE Alu 1 174 -1 302 113 0 19 chr1 234792887 234792940 -47400724 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 312 315 33 0 chr1 234792946 234793038 -47400626 - L1M4 LINE L1 -2962 3184 3090 184 333 114 18 chr1 234793225 234793339 -47400325 + L2 LINE L2 3181 3305 -8 222 371 115 17 chr1 234793729 234794017 -47399647 - L2 LINE L2 -9 3304 2989 487 330 84 0 chr1 234795241 234795432 -47398232 + L3 LINE CR1 1370 1576 -1 371 400 29 9 chr1 234795500 234795710 -47397954 - MIR SINE MIR -29 233 20 757 216 60 0 chr1 234796155 234796322 -47397342 - MER63A DNA MER1_type -33 177 1 445 241 147 0 chr1 234796584 234796700 -47396964 + L2 LINE L2 3181 3313 0 1731 205 14 6 chr1 234796747 234797105 -47396559 + MLT1A1 LTR MaLR 1 361 -4 242 407 60 5 chr1 234797123 234797322 -47396342 + MIR SINE MIR 37 246 -16 572 305 43 9 chr1 234798565 234798775 -47394889 + MIR SINE MIR 5 221 -41 303 319 11 0 chr1 234799488 234799582 -47394082 - MIR3 SINE MIR -49 159 65 374 257 40 20 chr1 234799784 234799885 -47393779 + L2 LINE L2 3211 3313 0 544 152 10 20 chr1 234799890 234799989 -47393675 - LTR33 LTR ERVL 0 521 424 2178 199 49 28 chr1 234799989 234800414 -47393250 + MLT2B1 LTR ERVL 1 415 -105 325 39 39 0 chr1 234800414 234800465 -47393199 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 2455 111 25 3 chr1 234800467 234800820 -47392844 - THE1B LTR MaLR -3 361 1 2178 199 49 28 chr1 234800820 234800859 -47392805 + MLT2B1 LTR ERVL 415 478 -42 629 112 28 28 chr1 234800866 234801044 -47392620 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 657 113 28 23 chr1 234801070 234801247 -47392417 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 329 75 19 0 chr1 234801260 234801313 -47392351 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 312 119 68 0 chr1 234801313 234801372 -47392292 + MLT2B1 LTR ERVL 458 520 0 386 319 84 48 chr1 234801372 234801645 -47392019 - LTR33 LTR ERVL -93 428 146 983 205 5 19 chr1 234801724 234801939 -47391725 + AluJ SINE Alu 1 212 -100 283 152 0 0 chr1 234801939 234801985 -47391679 + MLT2B1 LTR ERVL 103 148 -372 680 120 0 0 chr1 234801985 234802085 -47391579 + AluJ SINE Alu 210 309 -3 1176 161 4 52 chr1 234802365 234802595 -47391069 - MER20 DNA MER1_type 0 219 1 464 243 15 142 chr1 234803464 234803616 -47390048 - MIR SINE MIR 0 262 157 2215 100 0 3 chr1 234803616 234803927 -47389737 + AluSx SINE Alu 1 310 -2 464 243 15 142 chr1 234803927 234804042 -47389622 - MIR SINE MIR -105 157 29 1071 118 34 17 chr1 234804237 234804415 -47389249 - MER96B DNA MER1_type? -235 182 2 1914 148 20 0 chr1 234804662 234804967 -47388697 - AluSx SINE Alu -1 311 1 307 241 76 13 chr1 234805032 234805111 -47388553 - MIR SINE MIR -109 153 70 521 229 153 8 chr1 234806101 234806256 -47387408 - MIR SINE MIR -36 226 47 3255 21 0 5 chr1 234806348 234806723 -47386941 - L1PA4 LINE L1 -5 6150 5778 1015 188 0 0 chr1 234806733 234806914 -47386750 + AluJb SINE Alu 132 312 0 275 127 0 36 chr1 234806914 234806969 -47386695 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 241 312 102 38 chr1 234807047 234807233 -47386431 - L2 LINE L2 -674 2640 2443 206 296 207 28 chr1 234807376 234807555 -47386109 - L2 LINE L2 -1122 2192 1982 593 165 119 23 chr1 234808036 234808212 -47385452 - L1ME4a LINE L1 -3 6118 5926 711 260 98 73 chr1 234808240 234808663 -47385001 - MLT1J2 LTR MaLR 0 446 6 202 294 0 0 chr1 234808908 234808959 -47384705 + L2 LINE L2 3139 3189 -83 360 290 0 0 chr1 234809242 234809335 -47384329 - FLAM SINE Alu -3 130 38 279 269 47 60 chr1 234809640 234809789 -47383875 - L2 LINE L2 -1464 1850 1704 1238 174 91 94 chr1 234809875 234809937 -47383727 + L1ME LINE L1 5114 5175 -991 2066 102 133 65 chr1 234809937 234809977 -47383687 - MSTA LTR MaLR 0 428 392 2250 107 7 0 chr1 234809977 234810287 -47383377 + AluSx SINE Alu 1 312 0 2066 102 133 65 chr1 234810287 234810646 -47383018 - MSTA LTR MaLR -36 392 2 1238 174 91 94 chr1 234810646 234811075 -47382589 + L1ME LINE L1 5175 5588 -578 1012 161 66 5 chr1 234811098 234811309 -47382355 - AluJo SINE Alu -21 291 68 2293 77 0 0 chr1 234811457 234811756 -47381908 - AluY SINE Alu -12 299 1 553 269 98 12 chr1 234811762 234812018 -47381646 + L1MC4 LINE L1 7764 8041 -1 253 370 76 17 chr1 234812029 234812148 -47381516 + MER5A DNA MER1_type 64 189 0 1928 138 7 3 chr1 234814241 234814539 -47379125 - AluJb SINE Alu -7 305 7 226 349 32 16 chr1 234814837 234814963 -47378701 + MIR SINE MIR 94 221 -41 2397 79 0 0 chr1 234815880 234816183 -47377481 - AluSx SINE Alu -9 303 1 1991 121 3 3 chr1 234816845 234817143 -47376521 - AluSx SINE Alu -14 298 1 198 0 0 0 chr1 234817201 234817223 -47376441 + (A)n Simple_repeat Simple_repeat 1 22 0 2205 108 0 6 chr1 234819486 234819801 -47373863 - AluSq SINE Alu 0 313 1 200 232 0 29 chr1 234820589 234820658 -47373006 + GA-rich Low_complexity Low_complexity 2 68 0 1118 153 112 73 chr1 234822045 234822192 -47371472 - AluJo SINE Alu -1 311 171 1632 136 75 14 chr1 234822192 234822471 -47371193 - AluJo SINE Alu -16 296 1 1118 153 112 73 chr1 234822471 234822610 -47371054 - AluJo SINE Alu -141 171 14 2036 116 10 3 chr1 234822920 234823221 -47370443 + AluSq SINE Alu 2 304 -9 474 18 0 0 chr1 234823221 234823276 -47370388 + (TA)n Simple_repeat Simple_repeat 1 55 0 333 0 0 0 chr1 234823275 234823312 -47370352 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 322 281 0 12 chr1 234824275 234824357 -47369307 - Charlie4 DNA MER1_type 0 1961 1881 1490 96 64 14 chr1 234825014 234825232 -47368432 - MER30 DNA MER1_type -1 229 1 421 255 130 67 chr1 234825372 234825580 -47368084 + MIR SINE MIR 20 240 -22 2116 98 0 0 chr1 234825652 234825971 -47367693 + AluSx SINE Alu 1 319 0 212 296 105 68 chr1 234827262 234827424 -47366240 - L2 LINE L2 0 3313 3146 606 229 66 18 chr1 234827836 234828002 -47365662 - MIR SINE MIR 0 262 89 2125 109 3 3 chr1 234828303 234828606 -47365058 + AluSq SINE Alu 1 303 -10 2136 106 68 19 chr1 234830527 234830848 -47362816 - MER1B DNA MER1_type 0 337 1 251 200 0 67 chr1 234831045 234831105 -47362559 - MIR SINE MIR -1 261 206 2335 80 3 0 chr1 234831636 234831937 -47361727 - AluSp SINE Alu -11 302 1 2453 142 23 23 chr1 234831962 234832433 -47361231 + L1MB3 LINE L1 5706 6176 -7 2182 96 3 10 chr1 234832453 234832755 -47360909 + AluSp SINE Alu 1 300 -13 1018 121 5 4 chr1 234832768 234832991 -47360673 + AluSx SINE Alu 2 308 -4 189 0 0 0 chr1 234833042 234833063 -47360601 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 202 309 0 60 chr1 234833093 234833177 -47360487 - L3 LINE CR1 -24 1553 1475 1959 119 3 16 chr1 234833981 234834293 -47359371 + AluSx SINE Alu 1 308 -4 1981 108 11 0 chr1 234834302 234834607 -47359057 + AluSg SINE Alu 1 308 0 21 0 0 0 chr1 234835297 234835318 -47358346 + AT_rich Low_complexity Low_complexity 1 21 0 3121 219 115 19 chr1 234835335 234836054 -47357610 + L1MDa LINE L1 60 708 -5832 2008 121 0 10 chr1 234836054 234836359 -47357305 + AluSx SINE Alu 1 302 -10 3121 219 115 19 chr1 234836359 234836749 -47356915 + L1MDa LINE L1 708 1434 -5106 198 191 0 0 chr1 234836766 234836813 -47356851 + (TG)n Simple_repeat Simple_repeat 2 48 0 416 277 101 13 chr1 234837087 234837246 -47356418 - MER5B DNA MER1_type -5 173 1 602 286 71 6 chr1 234840873 234841041 -47352623 + MIR SINE MIR 74 252 -10 444 282 39 26 chr1 234843474 234843630 -47350034 - MIR3 SINE MIR -45 163 6 951 292 18 3 chr1 234844742 234845026 -47348638 - LTR33 LTR ERVL -233 288 1 305 272 87 10 chr1 234845570 234845673 -47347991 - L1MC3 LINE L1 -1139 6646 6536 325 192 0 0 chr1 234845590 234845642 -47348022 + L1MC4 LINE L1 6652 6703 -1339 246 316 48 6 chr1 234847942 234848110 -47345554 + CT-rich Low_complexity Low_complexity 5 179 0 204 222 37 0 chr1 234848604 234848658 -47345006 + C-rich Low_complexity Low_complexity 2 57 0 230 331 153 13 chr1 234850329 234850486 -47343178 - L2 LINE L2 -641 2673 2495 250 290 60 20 chr1 234853188 234853288 -47340376 - L2 LINE L2 -1 3271 3168 183 278 306 0 chr1 234853751 234853823 -47339841 - MIR SINE MIR -67 141 48 2485 64 0 3 chr1 234853886 234854197 -47339467 + AluSx SINE Alu 1 310 -2 600 306 20 4 chr1 234854818 234854976 -47338688 + MIR SINE MIR 17 172 -67 365 0 0 22 chr1 234855241 234855287 -47338377 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 612 257 47 6 chr1 234855422 234855593 -47338071 - MIR SINE MIR -63 199 22 2245 94 3 0 chr1 234856956 234857254 -47336410 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr1 234859114 234859142 -47334522 + GC_rich Low_complexity Low_complexity 1 28 0 358 282 15 99 chr1 234860097 234860245 -47333419 - MER5A DNA MER1_type -1 188 59 1942 102 0 7 chr1 234860245 234860564 -47333100 + AluSx SINE Alu 1 317 0 358 282 15 99 chr1 234860564 234860616 -47333048 - MER5A DNA MER1_type -130 59 4 797 174 104 0 chr1 234860945 234861089 -47332575 - MER39 LTR ERV1 -542 165 7 2192 119 0 0 chr1 234861598 234861900 -47331764 - AluSq SINE Alu -11 302 1 1076 179 88 74 chr1 234861933 234862230 -47331434 - AluJb SINE Alu -1 301 1 355 230 142 0 chr1 234862232 234862345 -47331319 + MIR SINE MIR 124 252 -10 24 0 0 0 chr1 234862845 234862869 -47330795 + AT_rich Low_complexity Low_complexity 1 24 0 510 243 14 56 chr1 234862918 234863062 -47330602 - MIR3 SINE MIR -6 202 65 2079 95 34 3 chr1 234863842 234864137 -47329527 - AluSx SINE Alu -8 304 1 216 299 0 45 chr1 234864297 234864364 -47329300 - L2 LINE L2 -12 3260 3197 194 85 0 64 chr1 234865309 234865356 -47328308 + (T)n Simple_repeat Simple_repeat 1 44 0 622 118 9 18 chr1 234865388 234865498 -47328166 - L1MA5 LINE L1 -5 6295 6187 1923 112 7 22 chr1 234865924 234866202 -47327462 + Tigger3(Golem) DNA MER2_type 2765 3038 0 264 273 15 0 chr1 234866601 234866667 -47326997 + CT-rich Low_complexity Low_complexity 1 67 0 2098 120 3 0 chr1 234868430 234868739 -47324925 - AluSx SINE Alu -2 310 1 806 260 48 4 chr1 234868739 234868970 -47324694 + MER112 DNA MER1_type 14 254 -6 726 181 0 0 chr1 234868977 234869093 -47324571 + FLAM_A SINE Alu 9 124 -18 527 123 0 85 chr1 234869241 234869347 -47324317 - AluSg/x SINE Alu 0 309 213 427 324 7 14 chr1 234869514 234869656 -47324008 + FRAM SINE Alu 14 154 -12 2021 132 3 0 chr1 234869691 234869995 -47323669 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 234869996 234870017 -47323647 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 234871183 234871205 -47322459 + (TG)n Simple_repeat Simple_repeat 1 22 0 2180 111 0 0 chr1 234871464 234871761 -47321903 - AluSq SINE Alu -15 298 2 1696 151 6 63 chr1 234871789 234872120 -47321544 - AluJb SINE Alu 0 312 1 343 118 0 16 chr1 234872239 234872304 -47321360 - Alu SINE Alu -253 48 1 938 144 177 0 chr1 234872509 234872690 -47320974 + AluJo SINE Alu 78 290 -22 378 0 0 0 chr1 234872707 234872749 -47320915 + (CA)n Simple_repeat Simple_repeat 1 42 0 2144 99 0 0 chr1 234872762 234873046 -47320618 + AluSq SINE Alu 12 295 -18 1740 160 41 0 chr1 234873641 234873935 -47319729 + AluJb SINE Alu 1 306 -6 2170 81 0 0 chr1 234873936 234874219 -47319445 + L1PA8 LINE L1 5799 6081 -91 210 167 13 51 chr1 234874272 234874350 -47319314 + (CGGG)n Simple_repeat Simple_repeat 3 77 0 29 47 0 0 chr1 234874459 234874502 -47319162 + GC_rich Low_complexity Low_complexity 1 43 0 2255 84 0 3 chr1 234875188 234875487 -47318177 - AluY SINE Alu -13 298 1 209 250 0 107 chr1 234875494 234875578 -47318086 + L2 LINE L2 3224 3298 -15 * 487 250 175 55 chr1 234875573 234875684 -47317980 + MIR SINE MIR 15 111 -151 1659 170 24 3 chr1 234875684 234875973 -47317691 - AluJb SINE Alu -17 295 1 487 250 175 55 chr1 234875973 234876061 -47317603 + MIR SINE MIR 111 238 -24 2306 101 0 0 chr1 234876935 234877241 -47316423 - AluSx SINE Alu -6 306 1 1858 160 0 6 chr1 234877590 234877903 -47315761 - AluJb SINE Alu -1 311 1 866 148 0 7 chr1 234878083 234878218 -47315446 + AluJo SINE Alu 1 134 -178 2276 97 6 0 chr1 234878319 234878630 -47315034 - AluSp SINE Alu 0 313 1 379 239 0 43 chr1 234878963 234879055 -47314609 - L2 LINE L2 0 3313 3226 22 0 0 0 chr1 234879119 234879141 -47314523 + AT_rich Low_complexity Low_complexity 1 22 0 210 256 89 44 chr1 234879297 234879387 -47314277 + L3 LINE CR1 1160 1253 -324 2140 66 31 0 chr1 234879437 234879723 -47313941 + AluY SINE Alu 4 298 -13 1923 121 10 3 chr1 234879789 234880094 -47313570 + AluSp SINE Alu 1 307 -6 572 113 0 0 chr1 234880095 234880175 -47313489 + MER30 DNA MER1_type 151 230 0 247 254 174 29 chr1 234880228 234880366 -47313298 + MIR SINE MIR 105 262 0 2091 95 0 35 chr1 234880899 234881215 -47312449 + AluSx SINE Alu 1 305 -7 387 279 61 74 chr1 234881248 234881477 -47312187 + L1ME4a LINE L1 5661 5886 -235 426 346 159 0 chr1 234882363 234882577 -47311087 - MIR SINE MIR -14 248 1 805 258 97 14 chr1 234883048 234883265 -47310399 - MIR SINE MIR -22 240 6 953 160 55 11 chr1 234884120 234884301 -47309363 - MER5A DNA MER1_type 0 189 1 807 176 0 0 chr1 234885576 234885707 -47307957 - FLAM_C SINE Alu -10 133 3 2071 97 0 10 chr1 234886121 234886437 -47307227 + AluSp SINE Alu 1 313 0 33 25 0 0 chr1 234886759 234886799 -47306865 + AT_rich Low_complexity Low_complexity 1 40 0 2183 101 0 0 chr1 234887068 234887366 -47306298 + AluSx SINE Alu 1 298 -14 605 272 79 40 chr1 234887422 234887579 -47306085 + MIR SINE MIR 53 202 -60 1998 98 52 0 chr1 234887579 234887866 -47305798 + AluSx SINE Alu 1 302 -10 2264 86 3 13 chr1 234887868 234888183 -47305481 + AluSx SINE Alu 1 312 0 605 272 79 40 chr1 234888183 234888224 -47305440 + MIR SINE MIR 202 262 0 309 304 65 0 chr1 234888219 234888311 -47305353 - L2 LINE L2 -6 3266 3169 * 1964 129 7 3 chr1 234888702 234889011 -47304653 + AluSx SINE Alu 1 310 -2 477 276 88 80 chr1 234889436 234889579 -47304085 + MIR SINE MIR 8 155 -107 1448 148 59 30 chr1 234889579 234889850 -47303814 + L1MB7 LINE L1 5890 6168 -16 477 276 88 80 chr1 234889850 234889956 -47303708 + MIR SINE MIR 155 259 -3 249 33 0 0 chr1 234889964 234889994 -47303670 + (TG)n Simple_repeat Simple_repeat 1 30 0 2031 120 3 0 chr1 234891117 234891418 -47302246 - AluSx SINE Alu -5 307 6 631 225 39 130 chr1 234891465 234891772 -47301892 - MLT1J LTR MaLR -4 507 229 497 333 92 33 chr1 234892050 234892353 -47301311 - L2 LINE L2 0 3272 2952 328 178 47 124 chr1 234894078 234894207 -47299457 + MER5B DNA MER1_type 31 149 -29 * 789 267 17 0 chr1 234894185 234894357 -47299307 - MIR SINE MIR -86 176 2 1848 95 50 18 chr1 234894475 234894758 -47298906 - AluSg SINE Alu -18 292 1 1749 158 3 16 chr1 234895169 234895479 -47298185 - AluJb SINE Alu -6 306 1 210 301 39 78 chr1 234895630 234895733 -47297931 + L2 LINE L2 3168 3266 -6 658 139 157 9 chr1 234896107 234896222 -47297442 - FLAM_C SINE Alu 0 133 2 311 255 221 7 chr1 234896391 234896540 -47297124 - L1MC4a LINE L1 -1905 5903 5723 1078 145 8 100 chr1 234896541 234896790 -47296874 - AluSg/x SINE Alu 0 310 85 551 243 38 85 chr1 234896804 234897039 -47296625 - L1MC4a LINE L1 -2071 5737 5514 2026 113 13 0 chr1 234897202 234897503 -47296161 + AluSx SINE Alu 1 305 -7 427 308 86 27 chr1 234897569 234897790 -47295874 + MIR SINE MIR 20 253 -9 2458 65 0 0 chr1 234897832 234898126 -47295538 + AluY SINE Alu 2 295 -16 732 151 16 8 chr1 234898163 234898289 -47295375 - AluJo SINE Alu -8 304 178 * 854 179 14 0 chr1 234898279 234898419 -47295245 - AluJo SINE Alu -168 144 3 2423 91 3 0 chr1 234899073 234899380 -47294284 + AluSp SINE Alu 1 308 -5 275 109 18 55 chr1 234899772 234899827 -47293837 - MER94 DNA DNA -1 133 81 1906 162 10 13 chr1 234899952 234900260 -47293404 - AluJo SINE Alu -5 307 1 914 173 130 22 chr1 234900261 234900492 -47293172 - L1MC4 LINE L1 -869 7173 6918 1773 141 23 0 chr1 234901408 234901671 -47291993 + AluSx SINE Alu 1 269 -43 737 139 0 54 chr1 234901679 234901808 -47291856 + AluSg/x SINE Alu 148 269 -43 988 95 0 29 chr1 234901852 234901989 -47291675 + FLAM_C SINE Alu 1 133 0 2011 125 74 16 chr1 234902232 234902641 -47291023 - MER39 LTR ERV1 -1 706 211 2347 107 0 0 chr1 234902647 234902946 -47290718 - AluSx SINE Alu -13 299 1 1040 242 22 58 chr1 234903030 234903389 -47290275 + L1MC4 LINE L1 7694 8039 -3 2540 80 3 0 chr1 234903793 234904105 -47289559 + AluSp SINE Alu 1 313 0 940 90 0 0 chr1 234904716 234904838 -47288826 - AluSc SINE Alu -14 295 174 2008 141 0 10 chr1 234905922 234906219 -47287445 - AluSx SINE Alu -18 294 1 1023 105 0 0 chr1 234906222 234906355 -47287309 - AluSq/x SINE Alu -179 133 1 247 243 157 0 chr1 234906556 234906626 -47287038 + L2 LINE L2 3192 3272 0 1629 70 4 53 chr1 234906741 234906791 -47286873 + L1MA1 LINE L1 6071 6122 -180 2255 91 3 0 chr1 234906791 234907076 -47286588 - AluSp SINE Alu -17 296 11 1629 70 4 53 chr1 234907076 234907269 -47286395 + L1MA1 LINE L1 6122 6302 0 21 57 0 0 chr1 234907271 234907306 -47286358 + AT_rich Low_complexity Low_complexity 1 35 0 347 290 65 58 chr1 234907503 234907641 -47286023 - L2 LINE L2 -8 3264 3126 2013 105 4 4 chr1 234907659 234907925 -47285739 + AluSx SINE Alu 1 266 -46 235 146 62 21 chr1 234907946 234907994 -47285670 + G-rich Low_complexity Low_complexity 4 53 0 1938 167 88 55 chr1 234908105 234908255 -47285409 + L1MDa LINE L1 1950 2094 -4446 2140 133 0 0 chr1 234908255 234908555 -47285109 + AluSq SINE Alu 1 300 -13 2298 89 0 3 chr1 234908557 234908848 -47284816 + AluSc SINE Alu 4 293 -16 1938 167 88 55 chr1 234908848 234909220 -47284444 + L1MDa LINE L1 2094 2492 -4048 692 278 94 5 chr1 234909303 234909515 -47284149 + MIR SINE MIR 15 245 -17 217 196 98 0 chr1 234909518 234909569 -47284095 + MIR SINE MIR 194 249 -13 197 175 0 25 chr1 234909536 234909576 -47284088 + L2 LINE L2 3262 3300 -13 * 315 274 102 68 chr1 234909831 234910097 -47283567 + HAL1 LINE L1 2193 2467 -40 320 306 62 62 chr1 234910424 234910619 -47283045 - L3 LINE CR1 -56 1521 1324 2001 106 55 10 chr1 234910619 234910911 -47282753 - AluSx SINE Alu -7 305 1 320 306 62 62 chr1 234910911 234911019 -47282645 - L3 LINE CR1 -252 1325 1218 908 154 0 0 chr1 234911375 234911511 -47282153 + AluSq/x SINE Alu 1 136 -177 34 24 0 0 chr1 234911777 234911818 -47281846 + AT_rich Low_complexity Low_complexity 1 41 0 2283 108 0 10 chr1 234911818 234912125 -47281539 + AluSx SINE Alu 1 304 -8 288 355 64 0 chr1 234912308 234912449 -47281215 - L2 LINE L2 -3 3310 3161 473 344 120 8 chr1 234912547 234913021 -47280643 + L2 LINE L2 2439 2965 -349 2174 127 0 7 chr1 234913072 234913372 -47280292 + AluSx SINE Alu 1 298 -14 269 353 0 0 chr1 234913558 234913643 -47280021 + L2 LINE L2 3188 3272 0 236 242 152 39 chr1 234913710 234913877 -47279787 + L1ME4a LINE L1 5759 5949 -172 1663 151 43 43 chr1 234913877 234914176 -47279488 + AluJo SINE Alu 1 299 -13 1513 178 68 14 chr1 234914320 234914601 -47279063 - AluJo SINE Alu -16 296 1 424 124 124 0 chr1 234914605 234914694 -47278970 + L1MB7 LINE L1 6054 6153 -31 2384 94 3 0 chr1 234914723 234915020 -47278644 - AluSx SINE Alu -14 298 1 195 285 175 22 chr1 234915071 234915208 -47278456 - MIR3 SINE MIR -28 180 23 24 0 0 0 chr1 234915793 234915817 -47277847 + AT_rich Low_complexity Low_complexity 1 24 0 265 266 93 46 chr1 234916228 234916465 -47277199 + L1ME LINE L1 5545 5792 -329 1639 211 75 26 chr1 234917030 234917484 -47276180 + Charlie1b DNA MER1_type 48 523 0 1043 357 14 77 chr1 234917572 234917869 -47275795 + AluSg1 SINE Alu 1 278 -31 252 0 0 0 chr1 234917875 234917903 -47275761 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 331 302 50 14 chr1 234917903 234918035 -47275629 - MER112 DNA MER1_type -111 149 10 2057 128 0 10 chr1 234918358 234918663 -47275001 + AluSx SINE Alu 1 302 -10 217 300 0 25 chr1 234918980 234919060 -47274604 + MIR SINE MIR 185 262 0 1776 149 8 0 chr1 234919781 234920043 -47273621 + AluSx SINE Alu 35 298 -14 377 264 108 0 chr1 234920545 234920693 -47272971 + MIR3 SINE MIR 16 179 -29 266 219 16 0 chr1 234922081 234922145 -47271519 + L1MC/D LINE L1 5673 5737 -2071 408 134 0 15 chr1 234922151 234922218 -47271446 + MER45 DNA AcHobo 1514 1579 -2 2412 71 7 0 chr1 234922609 234922903 -47270761 + AluSp SINE Alu 1 296 -17 763 172 6 64 chr1 234923052 234923209 -47270455 - FRAM SINE Alu -26 150 3 2030 95 0 4 chr1 234923293 234923555 -47270109 + AluSg SINE Alu 1 261 -49 381 183 0 0 chr1 234923656 234923716 -47269948 - AluSp/q SINE Alu -18 285 226 1880 152 13 7 chr1 234923820 234924130 -47269534 - AluJb SINE Alu 0 312 1 618 263 142 50 chr1 234924235 234924616 -47269048 + L1ME LINE L1 5401 5816 -354 278 290 45 26 chr1 234924624 234924663 -47269001 + L2 LINE L2 2814 2851 -462 2612 56 0 0 chr1 234924663 234924969 -47268695 - AluY SINE Alu -5 306 1 278 290 45 26 chr1 234924969 234925084 -47268580 + L2 LINE L2 2851 2971 -342 432 0 0 0 chr1 234925088 234925136 -47268528 + (TG)n Simple_repeat Simple_repeat 1 48 0 2188 111 0 0 chr1 234925136 234925415 -47268249 - AluSx SINE Alu -33 279 1 543 276 25 30 chr1 234925415 234925614 -47268050 + L2 LINE L2 3108 3305 -8 22 56 0 0 chr1 234925919 234925955 -47267709 + AT_rich Low_complexity Low_complexity 1 36 0 847 117 0 0 chr1 234925970 234926081 -47267583 - FLAM_C SINE Alu -32 111 1 644 144 0 0 chr1 234926339 234926436 -47267228 + AluJ/FLAM SINE Alu 1 97 -215 229 192 0 19 chr1 234927254 234927306 -47266358 + LTR66 LTR ERVL 389 439 -171 541 213 57 7 chr1 234927630 234927771 -47265893 - MIR SINE MIR -13 249 102 1764 178 30 3 chr1 234928114 234928417 -47265247 + AluSx SINE Alu 1 311 -1 2005 154 3 0 chr1 234928554 234928853 -47264811 + AluSx SINE Alu 1 300 -12 1853 173 3 3 chr1 234929800 234930101 -47263563 + AluJo SINE Alu 1 301 -11 1937 116 53 14 chr1 234931412 234931697 -47261967 - AluSg SINE Alu -14 296 1 2688 108 14 3 chr1 234932025 234932396 -47261268 - THE1C LTR MaLR 0 375 1 8120 116 2 24 chr1 234932396 234933497 -47260167 - THE1C-int LTR MaLR 0 1580 505 2217 89 40 16 chr1 234933497 234933801 -47259863 - AluSx SINE Alu 0 312 2 8120 116 2 24 chr1 234933801 234933882 -47259782 - THE1C-int LTR MaLR -1075 505 424 292 130 22 0 chr1 234933906 234933952 -47259712 + Alu SINE Alu 1 47 -255 3696 100 51 12 chr1 234934458 234935029 -47258635 - Tigger3b DNA MER2_type -19 1213 621 180 0 0 0 chr1 234935029 234935049 -47258615 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1019 189 47 5 chr1 234935054 234935245 -47258419 - AluJo SINE Alu -30 282 84 2402 146 123 60 chr1 234935245 234935734 -47257930 - Tigger3b DNA MER2_type -2425 603 72 2462 82 3 0 chr1 234935734 234936039 -47257625 - AluSp SINE Alu -7 306 1 2402 146 123 60 chr1 234936039 234936116 -47257548 - Tigger3b DNA MER2_type -2956 72 1 1265 152 43 26 chr1 234936168 234936398 -47257266 - MER46A DNA MER2_type 0 236 3 377 204 61 51 chr1 234936402 234936500 -47257164 + L2 LINE L2 3138 3236 -36 974 247 43 67 chr1 234936977 234937282 -47256382 + L1MC4 LINE L1 7588 7899 -143 1837 109 20 68 chr1 234937282 234937576 -47256088 - AluSx SINE Alu -32 280 1 974 247 43 67 chr1 234937576 234937620 -47256044 + L1MC4 LINE L1 7899 7943 -99 255 61 0 0 chr1 234937620 234937653 -47256011 + (TG)n Simple_repeat Simple_repeat 2 34 0 974 247 43 67 chr1 234937653 234937764 -47255900 + L1MC4 LINE L1 7943 8038 -4 1438 114 84 48 chr1 234937876 234938173 -47255491 + THE1C LTR MaLR 1 375 0 2630 78 28 0 chr1 234938173 234938532 -47255132 + THE1C-int LTR MaLR 1 369 -1211 2275 65 0 28 chr1 234938532 234938855 -47254809 - AluSx SINE Alu 0 315 1 189 0 0 0 chr1 234938855 234938876 -47254788 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2064 135 4 0 chr1 234938879 234939160 -47254504 - AluSq SINE Alu -31 282 1 2181 127 3 0 chr1 234939169 234939476 -47254188 - AluSq SINE Alu -5 308 1 2966 158 25 19 chr1 234939716 234940240 -47253424 + MER57-int LTR ERV1 5825 6351 -1186 2179 142 0 0 chr1 234940286 234940588 -47253076 - AluJb SINE Alu -10 302 1 301 269 111 9 chr1 234940733 234940841 -47252823 + L2 LINE L2 3194 3312 -1 563 152 247 51 chr1 234941087 234941245 -47252419 - MER96B DNA MER1_type? -212 205 17 559 317 14 41 chr1 234941242 234941532 -47252132 - LTR16A LTR ERVL -151 299 18 * 2311 88 3 0 chr1 234941550 234941876 -47251788 - AluSx SINE Alu 0 327 1 838 193 28 11 chr1 234942456 234942632 -47251032 - MLT1A1 LTR MaLR 0 365 187 399 185 8 0 chr1 234942728 234942807 -47250857 - PABL_B LTR ERV1 0 660 579 2286 110 0 3 chr1 234942807 234943115 -47250549 - AluSg SINE Alu -3 307 1 1048 176 60 56 chr1 234943117 234943350 -47250314 - LTR8A LTR ERV1 -460 267 34 575 181 9 9 chr1 234943438 234943543 -47250121 + FRAM SINE Alu 60 164 -12 1916 125 0 46 chr1 234943613 234943916 -47249748 - AluSx SINE Alu -3 309 21 290 353 27 12 chr1 234943975 234944233 -47249431 - L1MEc LINE L1 -4579 1817 1556 2249 99 7 3 chr1 234944249 234944552 -47249112 + AluSq SINE Alu 1 304 -9 1987 133 0 0 chr1 234945061 234945339 -47248325 + AluY SINE Alu 1 278 -33 1667 120 79 58 chr1 234945376 234945668 -47247996 + AluSq SINE Alu 3 300 -13 1646 115 96 11 chr1 234945912 234946173 -47247491 - AluJb SINE Alu -29 283 1 1544 82 0 0 chr1 234946238 234946421 -47247243 - AluSq SINE Alu -130 183 1 815 173 7 7 chr1 234946421 234946560 -47247104 - AluJo SINE Alu -173 139 1 425 204 0 23 chr1 234946598 234946686 -47246978 - AluJb SINE Alu -93 219 134 2187 114 0 7 chr1 234946909 234947206 -47246458 - AluSx SINE Alu -17 295 1 1591 207 64 43 chr1 234948029 234948468 -47245196 + LTR2 LTR ERV1 1 448 -1 2442 76 0 0 chr1 234948745 234949034 -47244630 - AluY SINE Alu -22 289 1 1981 128 42 10 chr1 234949114 234949402 -47244262 - AluSx SINE Alu -13 299 3 1567 196 29 76 chr1 234949522 234949905 -47243759 + MLT1A1 LTR MaLR 1 365 0 2116 113 44 0 chr1 234949980 234950273 -47243391 + AluSx SINE Alu 1 306 -6 1719 162 30 13 chr1 234950733 234951035 -47242629 + AluJo SINE Alu 1 307 -5 1832 108 4 4 chr1 234952496 234952745 -47240919 - AluSx SINE Alu -1 311 63 1373 100 0 0 chr1 234954879 234955059 -47238605 - AluSg/x SINE Alu -2 310 131 186 209 0 0 chr1 234955884 234955927 -47237737 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2444 83 0 3 chr1 234955929 234956231 -47237433 - AluSg SINE Alu -9 301 1 219 139 0 0 chr1 234957276 234957312 -47236352 + (A)n Simple_repeat Simple_repeat 1 36 0 240 250 78 52 chr1 234957783 234957899 -47235765 - MIR SINE MIR -39 223 105 2283 104 7 0 chr1 234958264 234958561 -47235103 - AluSp SINE Alu -14 299 1 236 327 39 58 chr1 234958779 234958984 -47234680 + L2 LINE L2 2396 2596 -718 275 350 103 15 chr1 234959296 234959499 -47234165 + MIR SINE MIR 30 250 -12 996 193 5 11 chr1 234959901 234960088 -47233576 + AluJo SINE Alu 121 306 -6 266 260 104 0 chr1 234961057 234961134 -47232530 - MIR3 SINE MIR -116 92 8 181 295 105 0 chr1 234961221 234961316 -47232348 - MIR SINE MIR -60 148 44 2057 146 31 0 chr1 234961859 234962153 -47231511 + AluJb SINE Alu 1 303 -9 2315 104 0 7 chr1 234962202 234962500 -47231164 + AluSc SINE Alu 1 296 -13 201 222 0 32 chr1 234963206 234963269 -47230395 + (TA)n Simple_repeat Simple_repeat 1 61 0 654 242 47 5 chr1 234963324 234963514 -47230150 - L1MC4a LINE L1 -1959 5849 5652 2288 127 0 0 chr1 234963728 234964035 -47229629 + AluSc SINE Alu 1 307 -2 2181 132 0 0 chr1 234964044 234964340 -47229324 + AluSx SINE Alu 1 296 -16 708 228 154 16 chr1 234964381 234964627 -47229037 + HAL1 LINE L1 25 304 -2203 228 217 160 47 chr1 234964651 234964757 -47228907 + HAL1 LINE L1 357 474 -2033 405 275 131 0 chr1 234964767 234964927 -47228737 + HAL1 LINE L1 533 713 -1794 517 194 0 0 chr1 234964941 234965034 -47228630 + L2 LINE L2 3221 3313 0 721 150 0 71 chr1 234965062 234965189 -47228475 - AluJb SINE Alu -193 119 2 27 49 0 0 chr1 234965601 234965642 -47228022 + AT_rich Low_complexity Low_complexity 1 41 0 396 194 243 10 chr1 234965936 234966039 -47227625 - MER5A DNA MER1_type 0 189 63 2462 93 0 3 chr1 234966040 234966353 -47227311 - AluSq SINE Alu -1 312 1 506 179 0 24 chr1 234966361 234966478 -47227186 - AluSg/x SINE Alu 0 317 203 2126 142 0 6 chr1 234966511 234966822 -47226842 + AluJb SINE Alu 1 309 -3 558 280 106 10 chr1 234966848 234967055 -47226609 + MIR SINE MIR 35 252 -10 1326 116 0 0 chr1 234967464 234967636 -47226028 - AluSq SINE Alu -8 305 134 2333 88 14 0 chr1 234967636 234967930 -47225734 - AluSp SINE Alu -11 302 5 832 168 111 62 chr1 234968149 234968357 -47225307 - AluJb SINE Alu -12 300 83 22 70 0 0 chr1 234968919 234968962 -47224702 + AT_rich Low_complexity Low_complexity 1 43 0 415 232 101 18 chr1 234969065 234969076 -47224588 - MIR SINE MIR -56 206 197 2510 70 0 10 chr1 234969076 234969378 -47224286 - AluY SINE Alu -12 299 1 415 232 101 18 chr1 234969378 234969527 -47224137 - MIR SINE MIR -65 197 37 488 292 26 60 chr1 234969527 234969703 -47223961 - L1ME4a LINE L1 -217 5904 5744 2156 137 0 3 chr1 234969703 234970010 -47223654 - AluSx SINE Alu -6 306 1 488 292 26 60 chr1 234970010 234970182 -47223482 - L1ME4a LINE L1 -377 5744 5568 744 110 0 28 chr1 234970636 234970786 -47222878 - AluSg/x SINE Alu 0 312 182 2580 44 0 3 chr1 234970820 234971115 -47222549 - AluSc SINE Alu -15 294 1 723 242 27 16 chr1 234971225 234971411 -47222253 - MER5A DNA MER1_type 0 189 2 239 287 102 48 chr1 234971721 234971888 -47221776 + L2 LINE L2 3135 3310 -3 805 71 50 50 chr1 234971996 234972137 -47221527 + MER30 DNA MER1_type 2 142 -88 331 78 0 0 chr1 234972174 234972225 -47221439 - AluSp/q SINE Alu -4 299 249 300 158 0 0 chr1 234972419 234972495 -47221169 + A-rich Low_complexity Low_complexity 1 76 0 2438 90 0 3 chr1 234973648 234973960 -47219704 + AluY SINE Alu 1 311 0 2058 124 10 3 chr1 234974153 234974444 -47219220 - AluSx SINE Alu -19 293 1 995 246 16 90 chr1 234975383 234975749 -47217915 + L2 LINE L2 2230 2568 -746 1840 84 95 8 chr1 234975782 234976044 -47217620 + AluSx SINE Alu 15 299 -13 265 210 65 0 chr1 234976150 234976212 -47217452 + L2 LINE L2 3206 3271 -1 380 326 227 24 chr1 234976781 234978431 -47215233 + L2 LINE L2 685 2726 -588 2275 113 3 0 chr1 234978431 234978741 -47214923 - AluSx SINE Alu -1 311 1 380 326 227 24 chr1 234978741 234978877 -47214787 + L2 LINE L2 2726 2833 -481 324 302 208 30 chr1 234978933 234979231 -47214433 + L2 LINE L2 2921 3271 -1 577 162 353 0 chr1 234979337 234979510 -47214154 - MIR SINE MIR -27 235 2 2924 164 20 28 chr1 234983561 234984159 -47209505 - L1MB5 LINE L1 -86 6088 5496 2140 134 6 13 chr1 234984159 234984473 -47209191 - AluJo SINE Alu 0 312 1 967 191 0 35 chr1 234984489 234984662 -47209002 + AluJb SINE Alu 129 295 -17 210 338 0 44 chr1 234984775 234984843 -47208821 - MIR SINE MIR -179 83 19 1755 131 16 64 chr1 234986377 234986691 -47206973 + AluJb SINE Alu 1 299 -13 672 276 95 9 chr1 234986868 234987089 -47206575 + MIR SINE MIR 16 255 -7 2542 66 0 0 chr1 234987321 234987623 -47206041 + AluY SINE Alu 1 302 -9 2217 113 13 7 chr1 234987670 234987980 -47205684 + AluSx SINE Alu 1 312 0 301 364 50 0 chr1 234988120 234988260 -47205404 - MIR SINE MIR -9 253 107 193 248 43 92 chr1 234988355 234988496 -47205168 - L2 LINE L2 -1114 2200 2067 216 267 10 50 chr1 234989015 234989116 -47204548 + CT-rich Low_complexity Low_complexity 1 97 0 228 226 140 43 chr1 234989675 234989693 -47203971 + MIR SINE MIR 18 33 -229 2095 121 0 0 chr1 234989693 234990002 -47203662 + AluSx SINE Alu 1 309 0 228 226 140 43 chr1 234990002 234990075 -47203589 + MIR SINE MIR 33 119 -143 1779 109 0 4 chr1 234991262 234991509 -47202155 - AluSg/x SINE Alu -1 311 66 221 274 48 0 chr1 234991514 234991576 -47202088 + MIR SINE MIR 143 207 -55 806 292 71 8 chr1 234991959 234992199 -47201465 + MIR SINE MIR 8 262 0 433 95 42 32 chr1 234995412 234995507 -47198157 + GA-rich Low_complexity Low_complexity 3 98 0 376 244 78 16 chr1 234995540 234995749 -47197915 - MER34 LTR ERV1 -277 265 1 447 322 11 32 chr1 234997263 234997538 -47196126 - L3 LINE CR1 -162 1415 1088 1182 155 39 164 chr1 234997543 234997878 -47195786 + AluJb SINE Alu 3 295 -7 256 314 29 29 chr1 234997909 234998011 -47195653 - L3 LINE CR1 -477 1100 999 324 203 16 0 chr1 234998476 234998540 -47195124 - MIR SINE MIR -78 130 66 656 136 0 18 chr1 235199791 235199901 -46993763 - MLT1A1 LTR MaLR -257 108 1 1395 225 16 0 chr1 235199901 235200221 -46993443 + L1MB7 LINE L1 5819 6143 -41 1771 155 33 10 chr1 235200240 235200543 -46993121 - AluJo SINE Alu -2 310 1 582 311 80 0 chr1 235200750 235200962 -46992702 - MIR SINE MIR -2 260 32 1910 158 3 13 chr1 235201090 235201393 -46992271 + AluJb SINE Alu 9 308 -4 634 197 47 0 chr1 235201491 235201618 -46992046 - FLAM_A SINE Alu 0 133 1 2188 133 0 0 chr1 235202526 235202871 -46990793 - AluSx SINE Alu 0 345 1 452 233 116 14 chr1 235203012 235203158 -46990506 - MER5A DNA MER1_type -13 176 16 339 176 33 11 chr1 235203404 235203495 -46990169 + GA-rich Low_complexity Low_complexity 4 96 0 2250 117 10 0 chr1 235203563 235203870 -46989794 - AluSx SINE Alu -2 310 1 1950 122 42 0 chr1 235204296 235204584 -46989080 + AluSx SINE Alu 3 302 -10 2260 116 0 0 chr1 235204585 235204879 -46988785 + AluSx SINE Alu 1 294 -18 206 291 6 42 chr1 235204956 235205121 -46988543 + (CAATA)n Simple_repeat Simple_repeat 3 161 0 1333 171 53 46 chr1 235205429 235205710 -46987954 - AluJo SINE Alu -23 289 7 1680 150 12 8 chr1 235205710 235205964 -46987700 + AluJo SINE Alu 37 291 -21 305 264 71 36 chr1 235205964 235206104 -46987560 + L1MC5 LINE L1 7669 7813 -148 945 185 46 82 chr1 235206287 235206497 -46987167 - MER58B DNA MER1_type -2119 301 104 1594 153 57 14 chr1 235206497 235206778 -46986886 + AluJb SINE Alu 1 293 -19 945 185 46 82 chr1 235206778 235206870 -46986794 - MER58B DNA MER1_type -2316 104 10 291 54 0 0 chr1 235206973 235207010 -46986654 + (CA)n Simple_repeat Simple_repeat 2 38 0 2574 54 10 0 chr1 235207210 235207507 -46986157 + AluSx SINE Alu 1 300 -12 31 58 0 0 chr1 235208086 235208138 -46985526 + GC_rich Low_complexity Low_complexity 1 52 0 200 167 21 0 chr1 235208522 235208570 -46985094 + GA-rich Low_complexity Low_complexity 6 54 0 1923 155 0 0 chr1 235208918 235209214 -46984450 + AluJb SINE Alu 9 304 -8 906 188 0 0 chr1 235209214 235209363 -46984301 + AluJb SINE Alu 134 282 -30 342 0 0 0 chr1 235209370 235209408 -46984256 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr1 235209416 235209446 -46984218 + AT_rich Low_complexity Low_complexity 1 30 0 850 144 0 0 chr1 235210702 235210820 -46982844 + FLAM_C SINE Alu 1 118 -25 838 173 0 0 chr1 235210985 235211118 -46982546 + FRAM SINE Alu 1 127 -49 2165 139 3 3 chr1 235211133 235211435 -46982229 - AluSx SINE Alu -10 302 1 2171 123 0 0 chr1 235212039 235212339 -46981325 - AluSx SINE Alu -12 300 1 181 324 76 14 chr1 235212355 235212486 -46981178 - MIR SINE MIR 0 262 120 1206 172 107 72 chr1 235212486 235212777 -46980887 + AluJo SINE Alu 1 301 -11 181 324 76 14 chr1 235212777 235212790 -46980874 - MIR SINE MIR -142 120 109 385 171 14 0 chr1 235212805 235212875 -46980789 - MER58A DNA MER1_type 0 107 37 1147 131 0 0 chr1 235213449 235213602 -46980062 + AluSx SINE Alu 1 153 -159 1035 200 0 10 chr1 235213604 235213799 -46979865 - AluJo SINE Alu -117 195 3 368 274 196 0 chr1 235213863 235214016 -46979648 - MER5A DNA MER1_type -3 186 4 2266 109 6 10 chr1 235214143 235214454 -46979210 - AluSx SINE Alu -2 310 1 1779 150 48 17 chr1 235214986 235215279 -46978385 + AluJb SINE Alu 3 304 -8 315 104 0 0 chr1 235215928 235215976 -46977688 + (CA)n Simple_repeat Simple_repeat 2 49 0 1739 163 31 3 chr1 235216032 235216321 -46977343 + AluJb SINE Alu 3 299 -13 672 190 0 0 chr1 235216442 235216558 -46977106 + FLAM_C SINE Alu 1 116 -17 330 202 132 44 chr1 235216713 235216827 -46976837 - MLT1F1 LTR MaLR -239 328 205 1887 164 7 0 chr1 235217296 235217588 -46976076 - AluJb SINE Alu -2 310 17 291 247 155 0 chr1 235217958 235218055 -46975609 - MIR SINE MIR -107 155 44 1709 164 24 17 chr1 235218840 235219133 -46974531 - AluJo SINE Alu -17 295 1 1444 136 9 9 chr1 235219154 235219367 -46974297 - AluJb SINE Alu -15 297 85 646 278 22 11 chr1 235219381 235219561 -46974103 - MER58A DNA MER1_type 0 224 43 933 212 0 0 chr1 235219682 235219847 -46973817 + AluJb SINE Alu 114 278 -34 234 222 0 0 chr1 235219993 235220047 -46973617 + MER58A DNA MER1_type 43 96 -11 198 143 0 0 chr1 235220062 235220097 -46973567 + (A)n Simple_repeat Simple_repeat 1 35 0 254 152 4 55 chr1 235220190 235220251 -46973413 + Alu SINE Alu 246 296 -5 2522 70 0 3 chr1 235220254 235220554 -46973110 + AluY SINE Alu 1 299 -12 565 173 36 0 chr1 235221036 235221146 -46972518 + AluJb SINE Alu 199 312 0 241 113 113 16 chr1 235221168 235221230 -46972434 + MLT1D LTR MaLR 438 505 0 635 305 87 49 chr1 235221520 235221860 -46971804 + L2 LINE L2 286 656 -2658 2516 80 0 6 chr1 235221860 235222174 -46971490 - AluSx SINE Alu 0 312 1 635 305 87 49 chr1 235222174 235222384 -46971280 + L2 LINE L2 656 857 -2457 976 192 0 0 chr1 235222851 235223018 -46970646 - AluJb SINE Alu -9 303 137 1820 165 3 17 chr1 235223266 235223402 -46970262 + AluJo SINE Alu 1 137 -179 2679 53 0 0 chr1 235223402 235223705 -46969959 + AluY SINE Alu 1 303 -8 1820 165 3 17 chr1 235223705 235223888 -46969776 + AluJo SINE Alu 137 316 0 1716 188 23 3 chr1 235223911 235224215 -46969449 - AluJb SINE Alu -2 310 1 1129 215 97 4 chr1 235224333 235224570 -46969094 - AluJo SINE Alu -49 263 5 2283 101 6 52 chr1 235225015 235225343 -46968321 + AluSq SINE Alu 1 313 0 2092 154 6 3 chr1 235225348 235225659 -46968005 + AluJb SINE Alu 1 312 0 769 161 24 0 chr1 235226713 235226837 -46966827 - LTR12 LTR ERV1 -229 485 359 344 222 0 0 chr1 235226837 235226918 -46966746 - LTR30 LTR ERV1 -98 624 544 1100 101 304 0 chr1 235226923 235227130 -46966534 - LTR12 LTR ERV1 -442 272 3 818 188 103 54 chr1 235227132 235227356 -46966308 - L1MD2 LINE L1 -53 6306 6072 250 271 156 8 chr1 235227562 235227684 -46965980 - MIR3 SINE MIR -52 156 17 25 0 0 0 chr1 235228321 235228346 -46965318 + GC_rich Low_complexity Low_complexity 1 25 0 210 120 40 40 chr1 235228802 235228877 -46964787 + C-rich Low_complexity Low_complexity 3 77 0 22 99 0 0 chr1 235229035 235229106 -46964558 + GC_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr1 235229199 235229221 -46964443 + GC_rich Low_complexity Low_complexity 1 22 0 312 158 0 0 chr1 235230432 235230489 -46963175 + T-rich Low_complexity Low_complexity 1 57 0 1002 114 139 24 chr1 235230508 235230674 -46962990 - AluJb SINE Alu -127 185 1 224 294 56 56 chr1 235231000 235231126 -46962538 - MIR SINE MIR -113 149 24 869 217 48 0 chr1 235231215 235231422 -46962242 - MER20 DNA MER1_type -1 218 2 2009 83 101 11 chr1 235234196 235234454 -46959210 + AluSp SINE Alu 2 288 -25 603 0 0 0 chr1 235234454 235234521 -46959143 + (AATAG)n Simple_repeat Simple_repeat 4 70 0 2009 83 101 11 chr1 235234521 235234539 -46959125 + AluSp SINE Alu 288 303 -10 195 125 0 0 chr1 235234824 235234864 -46958800 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 2005 119 40 0 chr1 235235104 235235381 -46958283 - AluSx SINE Alu -17 295 8 364 240 70 102 chr1 235235415 235235665 -46957999 - HAL1 LINE L1 0 2507 2269 2131 142 13 0 chr1 235235665 235235968 -46957696 - AluSx SINE Alu -5 307 1 364 240 70 102 chr1 235235968 235236059 -46957605 - HAL1 LINE L1 -238 2269 2177 357 152 30 0 chr1 235236059 235236125 -46957539 - MER20 DNA MER1_type -41 178 111 1982 168 0 0 chr1 235236125 235236423 -46957241 - AluJb SINE Alu -14 298 1 1134 131 258 54 chr1 235236513 235236739 -46956925 + MER83B LTR ERV1 1 180 -198 2354 104 3 3 chr1 235236739 235237048 -46956616 - AluSp SINE Alu -4 309 1 1134 131 258 54 chr1 235237048 235237135 -46956529 + MER83B LTR ERV1 180 378 0 364 188 42 10 chr1 235237167 235237263 -46956401 - HAL1 LINE L1 -475 2032 1934 354 322 80 5 chr1 235237267 235237466 -46956198 - HAL1 LINE L1 -843 1664 1451 893 265 60 29 chr1 235237472 235237496 -46956168 - HAL1 LINE L1 -1304 1203 1181 1017 177 0 6 chr1 235237496 235237671 -46955993 - FAM SINE Alu -1 174 1 893 265 60 29 chr1 235237671 235238061 -46955603 - HAL1 LINE L1 -1326 1181 776 188 286 36 0 chr1 235238424 235238480 -46955184 + MIR SINE MIR 151 208 -54 1784 148 0 4 chr1 235238559 235238836 -46954828 + AluJo SINE Alu 36 311 -1 22 0 0 0 chr1 235238957 235238979 -46954685 + AT_rich Low_complexity Low_complexity 1 22 0 3128 137 20 62 chr1 235338996 235339072 -46854592 + MER57-int LTR ERV1 5213 5291 -2246 1783 172 3 0 chr1 235339072 235339368 -46854296 + AluJb SINE Alu 1 297 -15 3128 137 20 62 chr1 235339368 235339883 -46853781 + MER57-int LTR ERV1 5291 5779 -1758 2367 59 0 31 chr1 235339949 235340272 -46853392 - AluSq SINE Alu 0 313 1 189 0 0 0 chr1 235340272 235340293 -46853371 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1939 135 4 0 chr1 235340296 235340577 -46853087 - AluSq SINE Alu -31 282 1 2058 127 3 0 chr1 235340586 235340893 -46852771 - AluSq SINE Alu -5 308 1 2959 158 25 19 chr1 235341133 235341657 -46852007 + MER57-int LTR ERV1 5825 6351 -1186 2056 142 0 0 chr1 235341703 235342005 -46851659 - AluJb SINE Alu -10 302 1 342 269 111 9 chr1 235342150 235342258 -46851406 + L2 LINE L2 3194 3312 -1 561 152 247 51 chr1 235342504 235342662 -46851002 - MER96B DNA MER1_type? -212 205 17 * 577 321 14 41 chr1 235342659 235342949 -46850715 - LTR16A LTR ERVL -151 299 18 2180 88 3 0 chr1 235342967 235343293 -46850371 - AluSx SINE Alu 0 327 1 845 193 28 11 chr1 235343873 235344049 -46849615 - MLT1A1 LTR MaLR 0 365 187 402 185 8 0 chr1 235344145 235344224 -46849440 - PABL_B LTR ERV1 0 660 579 2146 114 0 3 chr1 235344224 235344532 -46849132 - AluSg SINE Alu -3 307 1 1066 172 60 56 chr1 235344534 235344767 -46848897 - LTR8A LTR ERV1 -460 267 34 576 181 9 9 chr1 235344855 235344960 -46848704 + FRAM SINE Alu 60 164 -12 1806 125 0 46 chr1 235345030 235345333 -46848331 - AluSx SINE Alu -3 309 21 274 353 27 12 chr1 235345392 235345650 -46848014 - L1MEc LINE L1 -4579 1817 1556 2119 99 7 3 chr1 235345666 235345969 -46847695 + AluSq SINE Alu 1 304 -9 1871 133 0 0 chr1 235346478 235346756 -46846908 + AluY SINE Alu 1 278 -33 1583 116 79 58 chr1 235346793 235347085 -46846579 + AluSq SINE Alu 3 300 -13 1540 115 96 11 chr1 235347329 235347590 -46846074 - AluJb SINE Alu -29 283 1 1459 82 0 0 chr1 235347655 235347838 -46845826 - AluSq SINE Alu -130 183 1 808 174 7 7 chr1 235347838 235347976 -46845688 - AluJo SINE Alu -173 139 2 463 241 0 19 chr1 235348015 235348123 -46845541 - AluJb SINE Alu -93 219 114 2200 114 0 0 chr1 235348213 235348519 -46845145 + AluSg SINE Alu 1 306 -4 2174 108 7 0 chr1 235348667 235348963 -46844701 + AluSx SINE Alu 1 298 -14 2068 118 0 3 chr1 235348980 235349276 -46844388 - AluSx SINE Alu -17 295 1 1618 207 64 43 chr1 235350099 235350538 -46843126 + LTR2 LTR ERV1 1 448 -1 2309 76 0 0 chr1 235350815 235351104 -46842560 - AluY SINE Alu -22 289 1 1837 128 42 10 chr1 235351184 235351472 -46842192 - AluSx SINE Alu -13 299 3 1532 196 29 76 chr1 235351592 235351975 -46841689 + MLT1A1 LTR MaLR 1 365 0 1970 113 44 0 chr1 235352050 235352343 -46841321 + AluSx SINE Alu 1 306 -6 1570 161 30 13 chr1 235352803 235353102 -46840562 + AluJo SINE Alu 1 304 -8 1708 108 4 4 chr1 235354566 235354815 -46838849 - AluSx SINE Alu -1 311 63 1285 100 0 0 chr1 235356949 235357129 -46836535 - AluSg/x SINE Alu -2 308 129 186 209 0 0 chr1 235357954 235357997 -46835667 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2300 77 0 3 chr1 235358004 235358301 -46835363 - AluSg SINE Alu -14 296 1 219 139 0 0 chr1 235359346 235359382 -46834282 + (A)n Simple_repeat Simple_repeat 1 36 0 239 250 78 52 chr1 235359853 235359969 -46833695 - MIR SINE MIR -39 223 105 2134 104 7 0 chr1 235360334 235360631 -46833033 - AluSp SINE Alu -14 299 1 242 341 34 54 chr1 235360849 235361054 -46832610 + L2 LINE L2 2396 2596 -718 280 350 103 15 chr1 235361366 235361569 -46832095 + MIR SINE MIR 30 250 -12 3707 106 80 164 chr1 235362326 235362897 -46830767 - Tigger3(Golem) DNA MER2_type -19 3010 2393 180 0 0 0 chr1 235362897 235362917 -46830747 + (TTG)n Simple_repeat Simple_repeat 2 21 0 947 189 47 5 chr1 235362922 235363113 -46830551 - AluJo SINE Alu -30 282 84 3707 106 80 164 chr1 235363113 235363602 -46830062 - Tigger3(Golem) DNA MER2_type -640 2389 1861 2332 82 3 0 chr1 235363602 235363907 -46829757 - AluSp SINE Alu -7 306 1 3707 106 80 164 chr1 235363907 235363984 -46829680 - Tigger3(Golem) DNA MER2_type -1168 1861 1 1254 152 43 26 chr1 235364036 235364266 -46829398 - MER46A DNA MER2_type 0 236 3 410 204 61 51 chr1 235364270 235364368 -46829296 + L2 LINE L2 3138 3236 -36 935 233 56 82 chr1 235364845 235365152 -46828512 + L1MC4 LINE L1 7588 7901 -141 1719 106 20 68 chr1 235365152 235365444 -46828220 - AluSx SINE Alu -34 278 1 935 233 56 82 chr1 235365444 235365487 -46828177 + L1MC4 LINE L1 7901 7944 -98 264 59 0 0 chr1 235365487 235365521 -46828143 + (TG)n Simple_repeat Simple_repeat 2 35 0 935 233 56 82 chr1 235365521 235365632 -46828032 + L1MC4 LINE L1 7944 8038 -4 1447 115 83 47 chr1 235365744 235366041 -46827623 + THE1C LTR MaLR 1 375 0 10572 103 32 27 chr1 235366041 235366400 -46827264 + THE1C-int LTR MaLR 1 356 -1224 2109 98 4 0 chr1 235366400 235366710 -46826954 - AluSx SINE Alu 0 315 5 10572 103 32 27 chr1 235366710 235366818 -46826846 + THE1C-int LTR MaLR 356 462 -1118 2125 92 36 16 chr1 235366818 235367123 -46826541 + AluSx SINE Alu 2 312 0 10572 103 32 27 chr1 235367123 235368224 -46825440 + THE1C-int LTR MaLR 462 1580 0 2685 108 14 3 chr1 235368224 235368595 -46825069 + THE1C LTR MaLR 1 375 0 1818 116 53 14 chr1 235368923 235369208 -46824456 + AluSg SINE Alu 1 296 -14 201 277 21 75 chr1 235370247 235370341 -46823323 + L2 LINE L2 3223 3311 -2 1739 173 3 3 chr1 235370518 235370819 -46822845 - AluJo SINE Alu -11 301 1 1893 153 0 0 chr1 235371766 235372060 -46821604 - AluSx SINE Alu -12 300 7 1741 172 30 0 chr1 235372202 235372504 -46821160 - AluSx SINE Alu -1 311 1 605 213 57 7 chr1 235372847 235372988 -46820676 + MIR SINE MIR 102 249 -13 226 192 0 19 chr1 235373312 235373364 -46820300 - LTR66 LTR ERVL -171 439 389 433 219 35 35 chr1 235374136 235374250 -46819414 + MER94 DNA DNA 20 133 -1 2290 91 3 0 chr1 235374642 235374949 -46818715 - AluSp SINE Alu -5 308 1 732 165 15 5 chr1 235375603 235375859 -46817805 + AluJo SINE Alu 3 304 -8 2355 61 0 0 chr1 235375896 235376190 -46817474 - AluY SINE Alu -16 295 2 427 308 86 27 chr1 235376232 235376453 -46817211 - MIR SINE MIR -9 253 20 2072 113 10 0 chr1 235376519 235376821 -46816843 - AluSx SINE Alu -7 305 1 551 243 38 85 chr1 235376984 235377219 -46816445 + L1MC4a LINE L1 5514 5737 -2071 1078 145 8 100 chr1 235377233 235377482 -46816182 + AluSg/x SINE Alu 85 310 0 311 255 221 7 chr1 235377483 235377632 -46816032 + L1MC4a LINE L1 5723 5903 -1905 658 139 157 9 chr1 235377801 235377916 -46815748 + FLAM_C SINE Alu 2 133 0 210 301 39 78 chr1 235378290 235378393 -46815271 - L2 LINE L2 -6 3266 3168 1749 158 3 16 chr1 235378544 235378854 -46814810 + AluJb SINE Alu 1 306 -6 1848 95 50 18 chr1 235379265 235379548 -46814116 + AluSg SINE Alu 1 292 -18 789 267 17 0 chr1 235379666 235379838 -46813826 + MIR SINE MIR 2 176 -86 328 178 47 124 chr1 235379816 235379945 -46813719 - MER5B DNA MER1_type -29 149 31 * 497 333 92 33 chr1 235381669 235381972 -46811692 + L2 LINE L2 2952 3272 0 631 225 39 130 chr1 235382250 235382557 -46811107 + MLT1J LTR MaLR 229 507 -4 2031 120 3 0 chr1 235382604 235382905 -46810759 + AluSx SINE Alu 6 307 -5 2134 92 0 3 chr1 235383401 235383685 -46809979 - AluSx SINE Alu -28 284 2 1696 151 6 63 chr1 235383713 235384044 -46809620 - AluJb SINE Alu 0 312 1 2040 139 10 0 chr1 235384541 235384850 -46808814 + AluSx SINE Alu 1 312 0 802 68 10 0 chr1 235385231 235385334 -46808330 - AluSg/x SINE Alu -75 235 132 2260 87 0 3 chr1 235385334 235385644 -46808020 - AluSp SINE Alu -4 309 1 735 163 13 33 chr1 235385644 235385797 -46807867 + Charlie1 DNA MER1_type 2612 2761 0 1654 173 10 3 chr1 235385818 235386113 -46807551 + AluJb SINE Alu 1 297 -15 774 105 65 120 chr1 235386130 235386248 -46807416 - MER53 DNA DNA 0 189 85 2316 100 0 0 chr1 235386248 235386558 -46807106 - AluSg SINE Alu 0 310 1 774 105 65 120 chr1 235386558 235386639 -46807025 - MER53 DNA DNA -104 85 1 235 248 150 35 chr1 235386643 235386756 -46806908 + L3b LINE CR1 1345 1470 -113 2298 95 3 0 chr1 235386758 235387064 -46806600 + AluSp SINE Alu 1 307 -6 1901 110 53 23 chr1 235387073 235387374 -46806290 + AluSg SINE Alu 1 310 0 392 325 35 0 chr1 235388031 235388145 -46805519 - L2 LINE L2 -16 3256 3139 318 203 16 0 chr1 235389418 235389482 -46804182 + MIR SINE MIR 66 130 -78 247 314 29 29 chr1 235389947 235390049 -46803615 + L3 LINE CR1 999 1100 -477 1137 155 39 164 chr1 235390080 235390415 -46803249 - AluJb SINE Alu -7 295 3 447 322 11 32 chr1 235390420 235390695 -46802969 + L3 LINE CR1 1088 1415 -162 394 244 78 16 chr1 235392208 235392417 -46801247 + MER34 LTR ERV1 1 265 -277 2220 119 0 0 chr1 235392450 235392843 -46800821 - AluSg SINE Alu 0 393 1 1075 126 21 109 chr1 235392962 235393201 -46800463 + AluJo SINE Alu 37 254 -58 2055 117 7 0 chr1 235393506 235393804 -46799860 - AluSx SINE Alu -12 300 1 2113 124 3 0 chr1 235393810 235394116 -46799548 - AluSx SINE Alu -5 307 1 3633 36 18 5 chr1 235394396 235394834 -46798830 - L1PA5 LINE L1 -1 6153 5710 1617 166 3 10 chr1 235394847 235395170 -46798494 - AluJb SINE Alu 0 312 1 1328 167 84 24 chr1 235395172 235395459 -46798205 - AluJb SINE Alu -8 304 1 501 262 24 86 chr1 235395545 235395755 -46797909 + MIR SINE MIR 47 243 -19 1802 81 0 0 chr1 235396057 235396292 -46797372 - AluSx SINE Alu -77 235 1 252 284 12 37 chr1 235396445 235396526 -46797138 - MIR3 SINE MIR -49 159 81 335 248 62 0 chr1 235396723 235396836 -46796828 - AluSc SINE Alu 0 299 180 2268 91 0 0 chr1 235397020 235397318 -46796346 + AluSx SINE Alu 1 298 -14 605 272 79 40 chr1 235397374 235397531 -46796133 + MIR SINE MIR 53 202 -60 1998 98 52 0 chr1 235397531 235397818 -46795846 + AluSx SINE Alu 1 302 -10 2264 86 3 13 chr1 235397820 235398135 -46795529 + AluSx SINE Alu 1 312 0 605 272 79 40 chr1 235398135 235398176 -46795488 + MIR SINE MIR 202 262 0 309 304 65 0 chr1 235398171 235398263 -46795401 - L2 LINE L2 -6 3266 3169 * 1964 129 7 3 chr1 235398654 235398963 -46794701 + AluSx SINE Alu 1 310 -2 477 276 88 80 chr1 235399388 235399531 -46794133 + MIR SINE MIR 8 155 -107 1453 148 59 30 chr1 235399531 235399802 -46793862 + L1MB7 LINE L1 5890 6168 -16 477 276 88 80 chr1 235399802 235399908 -46793756 + MIR SINE MIR 155 259 -3 249 33 0 0 chr1 235399916 235399946 -46793718 + (TG)n Simple_repeat Simple_repeat 1 30 0 2193 127 3 0 chr1 235400465 235400765 -46792899 - AluSx SINE Alu -11 301 1 727 62 0 18 chr1 235400802 235400914 -46792750 + (TCCCC)n Simple_repeat Simple_repeat 5 114 0 1671 150 64 4 chr1 235400914 235401194 -46792470 - AluSq SINE Alu -12 301 5 23 0 0 0 chr1 235401611 235401634 -46792030 + AT_rich Low_complexity Low_complexity 1 23 0 308 156 44 22 chr1 235402244 235402334 -46791330 + C-rich Low_complexity Low_complexity 4 95 0 2023 105 4 4 chr1 235402355 235402621 -46791043 - AluSx SINE Alu -46 266 1 392 258 83 23 chr1 235402645 235402777 -46790887 + L2 LINE L2 3166 3305 -8 21 57 0 0 chr1 235402974 235403009 -46790655 + AT_rich Low_complexity Low_complexity 1 35 0 1594 70 4 53 chr1 235403011 235403204 -46790460 - L1MA1 LINE L1 0 6302 6122 2271 91 3 0 chr1 235403204 235403489 -46790175 + AluSp SINE Alu 11 296 -17 1594 70 4 53 chr1 235403489 235403539 -46790125 - L1MA1 LINE L1 -180 6122 6071 276 243 157 0 chr1 235403654 235403724 -46789940 - L2 LINE L2 0 3272 3192 1032 105 0 0 chr1 235403925 235404058 -46789606 + AluSq/x SINE Alu 1 133 -180 2039 150 0 3 chr1 235404061 235404361 -46789303 + AluSx SINE Alu 1 299 -13 946 90 0 0 chr1 235405442 235405564 -46788100 + AluSc SINE Alu 174 295 -14 2564 80 3 0 chr1 235406175 235406487 -46787177 - AluSp SINE Alu 0 313 1 1003 254 17 53 chr1 235406891 235407250 -46786414 - L1MC4 LINE L1 -3 8039 7694 2267 105 20 20 chr1 235407334 235407640 -46786024 + AluSq SINE Alu 1 306 -7 995 223 127 26 chr1 235407672 235407816 -46785848 - L1MC4 LINE L1 -710 7332 7204 1945 162 10 13 chr1 235407816 235408124 -46785540 - AluJo SINE Alu -5 307 1 995 223 127 26 chr1 235408124 235408356 -46785308 - L1MC4 LINE L1 -838 7204 6918 1793 141 23 0 chr1 235409272 235409535 -46784129 + AluSx SINE Alu 1 269 -43 792 132 0 54 chr1 235409543 235409672 -46783992 + AluSg/x SINE Alu 148 269 -43 1011 95 0 29 chr1 235409716 235409853 -46783811 + FLAM_C SINE Alu 1 133 0 1971 148 111 51 chr1 235410096 235410511 -46783153 - MER39 LTR ERV1 -1 706 192 2370 107 0 0 chr1 235410511 235410810 -46782854 - AluSx SINE Alu -13 299 1 1971 148 111 51 chr1 235410810 235411008 -46782656 - MER39 LTR ERV1 -515 192 7 2345 119 0 0 chr1 235411517 235411819 -46781845 - AluSq SINE Alu -11 302 1 1121 185 81 67 chr1 235411852 235412149 -46781515 - AluJb SINE Alu -1 301 1 346 230 142 0 chr1 235412151 235412264 -46781400 + MIR SINE MIR 124 252 -10 24 0 0 0 chr1 235412764 235412788 -46780876 + AT_rich Low_complexity Low_complexity 1 24 0 512 243 14 56 chr1 235412837 235412981 -46780683 - MIR3 SINE MIR -6 202 65 2224 95 34 3 chr1 235413761 235414056 -46779608 - AluSx SINE Alu -8 304 1 215 299 0 45 chr1 235414216 235414283 -46779381 - L2 LINE L2 -12 3260 3197 194 85 0 64 chr1 235415228 235415275 -46778389 + (T)n Simple_repeat Simple_repeat 1 44 0 616 118 9 18 chr1 235415307 235415417 -46778247 - L1MA5 LINE L1 -5 6295 6187 1829 112 7 22 chr1 235415843 235416121 -46777543 + Tigger3(Golem) DNA MER2_type 2755 3028 -1 264 273 15 0 chr1 235416519 235416585 -46777079 + CT-rich Low_complexity Low_complexity 1 67 0 788 229 47 54 chr1 235418322 235418348 -46775316 + MER112 DNA MER1_type 1 26 -230 2177 123 7 0 chr1 235418348 235418656 -46775008 - AluSx SINE Alu -2 310 1 788 229 47 54 chr1 235418656 235418887 -46774777 + MER112 DNA MER1_type 26 256 0 746 192 0 0 chr1 235418894 235419019 -46774645 + FLAM_A SINE Alu 9 133 -9 2209 121 0 34 chr1 235419158 235419481 -46774183 - AluSx SINE Alu 0 312 1 965 250 151 8 chr1 235419516 235419768 -46773896 + AluJo SINE Alu 3 290 -12 2172 132 3 0 chr1 235419803 235420107 -46773557 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1 235420108 235420129 -46773535 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 235421295 235421317 -46772347 + (TG)n Simple_repeat Simple_repeat 1 22 0 2381 94 0 0 chr1 235421576 235421874 -46771790 - AluSq SINE Alu -15 298 1 225 0 0 0 chr1 235421874 235421899 -46771765 + (T)n Simple_repeat Simple_repeat 1 25 0 1936 126 36 26 chr1 235421970 235422279 -46771385 - AluJb SINE Alu 0 312 1 1026 144 177 0 chr1 235422501 235422682 -46770982 + AluJo SINE Alu 78 290 -22 378 0 0 0 chr1 235422699 235422741 -46770923 + (CA)n Simple_repeat Simple_repeat 1 42 0 2285 99 0 0 chr1 235422754 235423038 -46770626 + AluSq SINE Alu 12 295 -18 1889 160 41 0 chr1 235423633 235423927 -46769737 + AluJb SINE Alu 1 306 -6 2711 69 39 3 chr1 235423928 235424289 -46769375 + L1PA8 LINE L1 5799 6172 0 2400 84 0 3 chr1 235424760 235425059 -46768605 - AluY SINE Alu -13 298 1 208 250 0 107 chr1 235425066 235425150 -46768514 + L2 LINE L2 3224 3298 -15 * 483 250 175 55 chr1 235425145 235425256 -46768408 + MIR SINE MIR 15 111 -151 1804 170 24 3 chr1 235425256 235425545 -46768119 - AluJb SINE Alu -17 295 1 483 250 175 55 chr1 235425545 235425633 -46768031 + MIR SINE MIR 111 238 -24 2460 101 0 0 chr1 235426507 235426813 -46766851 - AluSx SINE Alu -6 306 1 2016 160 0 6 chr1 235427162 235427475 -46766189 - AluJb SINE Alu -1 311 1 937 148 0 7 chr1 235427655 235427790 -46765874 + AluJo SINE Alu 1 134 -178 2433 97 6 0 chr1 235427891 235428202 -46765462 - AluSp SINE Alu 0 313 1 378 239 0 43 chr1 235428535 235428627 -46765037 - L2 LINE L2 0 3313 3226 22 0 0 0 chr1 235428691 235428713 -46764951 + AT_rich Low_complexity Low_complexity 1 22 0 209 256 89 44 chr1 235428869 235428959 -46764705 + L3 LINE CR1 1160 1253 -324 2277 66 31 0 chr1 235429009 235429295 -46764369 + AluY SINE Alu 4 298 -13 2389 91 7 0 chr1 235429361 235429669 -46763995 + AluSp SINE Alu 1 310 -3 28 29 0 0 chr1 235429681 235429716 -46763948 + AT_rich Low_complexity Low_complexity 1 35 0 1707 107 4 0 chr1 235429935 235430169 -46763495 - AluSx SINE Alu -77 235 1 251 284 12 37 chr1 235430322 235430403 -46763261 - MIR3 SINE MIR -49 159 81 2383 96 6 16 chr1 235430591 235430904 -46762760 - AluSg SINE Alu 0 310 1 195 129 0 0 chr1 235431318 235431349 -46762315 + (TG)n Simple_repeat Simple_repeat 1 31 0 385 208 200 17 chr1 235431349 235431469 -46762195 + L2 LINE L2 3123 3264 -8 2356 95 0 16 chr1 235432050 235432186 -46761478 + AluSx SINE Alu 1 138 -174 2212 98 3 14 chr1 235432186 235432507 -46761157 + AluSp SINE Alu 1 318 0 2356 95 0 16 chr1 235432507 235432674 -46760990 + AluSx SINE Alu 138 300 -12 1020 72 0 0 chr1 235432693 235432831 -46760833 + L1PB1 LINE L1 6011 6148 -3 247 146 0 0 chr1 235433552 235433593 -46760071 - MIR SINE MIR -108 154 114 282 298 101 37 chr1 235434045 235434233 -46759431 - MIR SINE MIR -28 234 35 2343 115 3 0 chr1 235434802 235435114 -46758550 - AluSq SINE Alu 0 313 1 184 316 0 38 chr1 235435527 235435606 -46758058 - MIR3 SINE MIR -6 202 127 203 296 220 0 chr1 235435740 235435872 -46757792 - MIR3 SINE MIR -4 204 44 833 293 71 4 chr1 235438882 235439121 -46754543 - MIR SINE MIR 0 262 8 221 274 48 0 chr1 235439504 235439566 -46754098 - MIR SINE MIR -55 207 143 1779 109 0 4 chr1 235439571 235439818 -46753846 + AluSg/x SINE Alu 66 311 -1 228 226 140 43 chr1 235441139 235441212 -46752452 - MIR SINE MIR -143 119 33 2094 121 0 0 chr1 235441212 235441521 -46752143 - AluSx SINE Alu 0 309 1 228 226 140 43 chr1 235441521 235441539 -46752125 - MIR SINE MIR -229 33 18 216 267 10 50 chr1 235442098 235442199 -46751465 + GA-rich Low_complexity Low_complexity 1 97 0 193 248 43 92 chr1 235442718 235442859 -46750805 + L2 LINE L2 2067 2200 -1114 301 364 50 0 chr1 235442954 235443094 -46750570 + MIR SINE MIR 107 253 -9 2237 107 13 7 chr1 235443234 235443544 -46750120 - AluSx SINE Alu 0 312 1 2262 185 14 10 chr1 235443544 235444063 -46749601 - L1 LINE L1 -1154 4992 4472 2468 82 3 0 chr1 235444320 235444625 -46749039 + AluSg SINE Alu 1 306 -4 333 210 16 0 chr1 235445298 235445360 -46748304 - MER2 DNA MER2_type -1 344 282 2284 85 0 23 chr1 235445387 235445693 -46747971 + AluSx SINE Alu 1 299 -13 1142 150 23 0 chr1 235445693 235445866 -46747798 + AluSg/x SINE Alu 132 308 -2 920 177 40 6 chr1 235445890 235446065 -46747599 - MER2 DNA MER2_type -154 191 11 667 294 62 9 chr1 235446070 235446281 -46747383 - MIR SINE MIR -25 237 16 1755 131 16 64 chr1 235446458 235446772 -46746892 - AluJb SINE Alu -13 299 1 210 338 0 44 chr1 235448306 235448374 -46745290 + MIR SINE MIR 19 83 -179 967 191 0 35 chr1 235448487 235448660 -46745004 - AluJb SINE Alu -17 295 129 2140 134 6 13 chr1 235448676 235448990 -46744674 + AluJo SINE Alu 1 312 0 2924 164 20 28 chr1 235448990 235449588 -46744076 + L1MB5 LINE L1 5496 6088 -86 2325 104 0 7 chr1 235454605 235454903 -46738761 - AluSc SINE Alu -13 296 1 2063 146 31 0 chr1 235454952 235455246 -46738418 - AluJb SINE Alu -9 303 1 250 271 0 7 chr1 235455978 235456048 -46737616 + MIR SINE MIR 25 92 -116 1739 166 3 47 chr1 235457017 235457337 -46736327 - AluJo SINE Alu -6 306 1 2422 95 0 0 chr1 235459613 235459917 -46733747 - AluSq SINE Alu -9 304 1 1935 145 0 20 chr1 235461754 235462051 -46731613 - AluJb SINE Alu -21 291 1 198 0 0 0 chr1 235462058 235462080 -46731584 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 360 262 24 48 chr1 235462882 235463008 -46730656 + MIR SINE MIR 65 187 -75 1203 242 12 79 chr1 235463676 235464081 -46729583 + L2 LINE L2 2191 2568 -746 1844 84 95 8 chr1 235464114 235464376 -46729288 + AluSx SINE Alu 15 299 -13 243 163 61 0 chr1 235464495 235464544 -46729120 + L2 LINE L2 3220 3271 -1 505 324 196 24 chr1 235465823 235466763 -46726901 + L2 LINE L2 1560 2696 -618 2290 113 3 0 chr1 235466763 235467073 -46726591 - AluSx SINE Alu -1 311 1 505 324 196 24 chr1 235467073 235467168 -46726496 + L2 LINE L2 2696 2773 -541 251 302 208 30 chr1 235467265 235467563 -46726101 + L2 LINE L2 2921 3271 -1 520 168 353 0 chr1 235467669 235467842 -46725822 - MIR SINE MIR -27 235 2 214 254 0 0 chr1 235468320 235468375 -46725289 + (CTG)n Simple_repeat Simple_repeat 1 55 0 414 279 124 57 chr1 235469178 235469655 -46724009 + MLT1J LTR MaLR 1 509 -2 276 203 54 14 chr1 235469696 235469770 -46723894 - MARNA DNA Mariner -17 569 493 283 242 16 0 chr1 235471332 235471394 -46722270 - MIR SINE MIR -119 143 81 205 269 45 30 chr1 235473815 235473882 -46719782 - L3b LINE CR1 -208 1375 1308 2320 102 0 3 chr1 235474085 235474388 -46719276 - AluSg SINE Alu -8 302 1 2131 121 10 0 chr1 235475217 235475507 -46718157 + AluSx SINE Alu 1 293 -19 2480 87 0 3 chr1 235475700 235476012 -46717652 - AluY SINE Alu 0 311 1 2241 122 0 13 chr1 235477215 235477527 -46716137 - AluJb SINE Alu -4 308 1 180 0 0 0 chr1 235478215 235478235 -46715429 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1982 176 0 0 chr1 235478579 235478880 -46714784 + AluJo SINE Alu 1 301 -11 231 254 113 0 chr1 235478897 235478968 -46714696 - MIR SINE MIR -108 154 76 216 241 0 0 chr1 235479162 235479216 -46714448 + G-rich Low_complexity Low_complexity 1 54 0 201 74 0 0 chr1 235479330 235479357 -46714307 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2320 61 11 0 chr1 235480690 235480968 -46712696 + AluSx SINE Alu 1 281 -31 465 19 0 0 chr1 235480968 235481022 -46712642 + (CA)n Simple_repeat Simple_repeat 1 54 0 31 58 0 0 chr1 235481989 235482041 -46711623 + GC_rich Low_complexity Low_complexity 1 52 0 32 67 0 0 chr1 235482111 235482171 -46711493 + GC_rich Low_complexity Low_complexity 1 60 0 902 160 55 11 chr1 235483080 235483261 -46710403 + MER5A DNA MER1_type 1 189 0 751 263 97 14 chr1 235484116 235484333 -46709331 + MIR SINE MIR 6 240 -22 384 346 159 0 chr1 235484804 235485018 -46708646 + MIR SINE MIR 1 248 -14 398 279 61 74 chr1 235485904 235486133 -46707531 - L1ME4a LINE L1 -235 5886 5661 2252 95 0 35 chr1 235486166 235486482 -46707182 - AluSx SINE Alu -7 305 1 220 261 174 29 chr1 235487015 235487153 -46706511 - MIR SINE MIR 0 262 105 615 94 0 85 chr1 235487206 235487287 -46706377 - MER30 DNA MER1_type 0 230 158 2462 85 3 0 chr1 235487287 235487593 -46706071 - AluSp SINE Alu -6 307 1 615 94 0 85 chr1 235487593 235487617 -46706047 - MER30 DNA MER1_type -72 158 134 331 78 0 0 chr1 235487657 235487708 -46705956 + AluSp/q SINE Alu 249 299 -4 799 71 50 50 chr1 235487745 235487886 -46705778 - MER30 DNA MER1_type -88 142 2 210 281 108 54 chr1 235487994 235488161 -46705503 - L2 LINE L2 -3 3310 3135 666 242 27 16 chr1 235488471 235488657 -46705007 + MER5A DNA MER1_type 2 189 0 2597 44 0 3 chr1 235488767 235489062 -46704602 + AluSc SINE Alu 1 294 -15 695 110 0 28 chr1 235489096 235489246 -46704418 + AluSg/x SINE Alu 182 312 0 519 292 26 60 chr1 235489700 235489872 -46703792 + L1ME4a LINE L1 5568 5723 -398 2164 137 0 3 chr1 235489872 235490179 -46703485 + AluSx SINE Alu 1 306 -6 519 292 26 60 chr1 235490179 235490355 -46703309 + L1ME4a LINE L1 5723 5904 -217 386 244 101 18 chr1 235490355 235490504 -46703160 + MIR SINE MIR 37 197 -65 2523 70 0 10 chr1 235490504 235490806 -46702858 + AluY SINE Alu 1 299 -12 386 244 101 18 chr1 235490806 235490817 -46702847 + MIR SINE MIR 197 206 -56 22 70 0 0 chr1 235490920 235490963 -46702701 + AT_rich Low_complexity Low_complexity 1 43 0 800 174 138 6 chr1 235491525 235491692 -46701972 + AluJb SINE Alu 83 271 -41 216 0 0 0 chr1 235491717 235491741 -46701923 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2345 88 14 0 chr1 235491951 235492245 -46701419 + AluSp SINE Alu 5 302 -11 1328 116 0 0 chr1 235492245 235492417 -46701247 + AluSq SINE Alu 134 305 -8 520 280 106 10 chr1 235492826 235493033 -46700631 - MIR SINE MIR -10 252 35 2132 142 0 6 chr1 235493059 235493370 -46700294 - AluJb SINE Alu -3 309 1 470 179 0 24 chr1 235493403 235493520 -46700144 + AluSg/x SINE Alu 201 315 0 2382 99 3 3 chr1 235493528 235493840 -46699824 + AluSq SINE Alu 1 312 -1 381 184 243 10 chr1 235493974 235494077 -46699587 + MER5A DNA MER1_type 63 189 0 27 49 0 0 chr1 235494371 235494412 -46699252 + AT_rich Low_complexity Low_complexity 1 41 0 668 158 0 71 chr1 235494824 235494951 -46698713 + AluJb SINE Alu 2 119 -193 493 194 0 0 chr1 235494979 235495072 -46698592 - L2 LINE L2 0 3313 3221 383 290 40 0 chr1 235495086 235495210 -46698454 - HAL1 LINE L1 -1794 713 585 242 212 177 44 chr1 235495249 235495362 -46698302 - HAL1 LINE L1 -2023 484 357 730 244 142 4 chr1 235495386 235495632 -46698032 - HAL1 LINE L1 -2203 304 25 2191 132 0 0 chr1 235495673 235495969 -46697695 - AluSx SINE Alu -16 296 1 2298 127 0 0 chr1 235495978 235496285 -46697379 - AluSc SINE Alu -2 307 1 661 242 47 5 chr1 235496499 235496689 -46696975 + L1MC4a LINE L1 5652 5849 -1959 201 222 0 32 chr1 235496744 235496807 -46696857 + (TA)n Simple_repeat Simple_repeat 1 61 0 275 319 152 0 chr1 235497555 235497693 -46695971 - MIR3 SINE MIR -8 200 42 21 36 0 0 chr1 235498968 235498996 -46694668 + GC_rich Low_complexity Low_complexity 1 28 0 314 321 30 23 chr1 235499949 235500080 -46693584 - MER5A DNA MER1_type -1 188 57 2090 102 0 7 chr1 235500097 235500416 -46693248 + AluSx SINE Alu 1 317 0 827 181 0 0 chr1 235501575 235501708 -46691956 - FLAM_C SINE Alu -10 133 1 2225 97 0 10 chr1 235502120 235502433 -46691231 + AluSp SINE Alu 1 310 0 321 129 82 24 chr1 235502608 235502693 -46690971 - Charlie1b DNA MER1_type -195 328 239 315 93 31 124 chr1 235502704 235502751 -46690913 - L1MB2 LINE L1 -2 6169 6134 2481 75 0 0 chr1 235502751 235503046 -46690618 - AluY SINE Alu -16 295 1 315 93 31 124 chr1 235503046 235503095 -46690569 - L1MB2 LINE L1 -37 6134 6082 652 133 0 0 chr1 235503099 235503197 -46690467 + AluJb SINE Alu 200 297 -15 727 150 9 187 chr1 235503218 235503367 -46690297 - Charlie1b DNA MER1_type -2545 216 134 1480 121 130 17 chr1 235503367 235503606 -46690058 + AluJb SINE Alu 21 286 -26 727 150 9 187 chr1 235503606 235503717 -46689947 - Charlie1b DNA MER1_type -2627 134 5 916 144 20 0 chr1 235504164 235504310 -46689354 - BC200 scRNA scRNA -51 149 1 2255 85 31 3 chr1 235504621 235504915 -46688749 - AluSp SINE Alu -11 302 1 227 274 145 43 chr1 235504946 235505063 -46688601 + L2 LINE L2 3169 3297 -16 232 243 14 29 chr1 235506821 235506891 -46686773 - MER5A DNA MER1_type -6 183 115 1881 125 7 40 chr1 235507103 235507407 -46686257 + AluJb SINE Alu 1 294 -18 6301 222 36 18 chr1 235507664 235509656 -46684008 - L1M2 LINE L1 -718 5482 3452 694 355 86 8 chr1 235509660 235510295 -46683369 - L1M2 LINE L1 -5174 781 256 1890 194 46 7 chr1 235510539 235510956 -46682708 + MER4C LTR ERV1 1 433 -32 814 228 76 46 chr1 235511127 235511545 -46682119 + L2 LINE L2 2719 3138 -175 2221 108 0 3 chr1 235511551 235511848 -46681816 - AluSx SINE Alu -16 296 1 926 217 0 0 chr1 235511850 235512016 -46681648 - AluSg/x SINE Alu -13 297 132 1962 170 0 3 chr1 235512016 235512322 -46681342 - AluJb SINE Alu -7 305 1 486 259 75 7 chr1 235512326 235512473 -46681191 + L2 LINE L2 3139 3295 -18 186 71 0 0 chr1 235512474 235512502 -46681162 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2259 113 3 3 chr1 235512510 235512810 -46680854 - AluSx SINE Alu -12 300 1 192 283 17 17 chr1 235512840 235512900 -46680764 - L3 LINE CR1 -209 1368 1309 2410 68 0 0 chr1 235514043 235514324 -46679340 + AluY SINE Alu 2 282 -29 546 108 0 0 chr1 235514335 235514418 -46679246 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 1669 96 5 14 chr1 235514557 235514775 -46678889 - AluSx SINE Alu -96 216 1 207 293 13 53 chr1 235514838 235514913 -46678751 + L2 LINE L2 3237 3308 -5 397 266 181 50 chr1 235514999 235515047 -46678617 + MIR SINE MIR 38 78 -184 2088 122 10 3 chr1 235515047 235515335 -46678329 - AluSx SINE Alu -22 290 1 397 266 181 50 chr1 235515335 235515485 -46678179 + MIR SINE MIR 78 262 0 2250 60 68 0 chr1 235515524 235515805 -46677859 - AluY SINE Alu -6 305 6 180 0 0 0 chr1 235515910 235515930 -46677734 + (T)n Simple_repeat Simple_repeat 1 20 0 204 213 225 12 chr1 235517208 235517288 -46676376 - MIR SINE MIR -70 192 96 638 260 51 47 chr1 235517324 235517578 -46676086 + MIR SINE MIR 8 262 0 230 251 0 0 chr1 235517611 235517668 -46675996 - MIR SINE MIR -122 86 29 2445 57 0 0 chr1 235517797 235518076 -46675588 - AluY SINE Alu -32 279 1 299 317 48 42 chr1 235518125 235518292 -46675372 - MIR3 SINE MIR -22 186 19 210 71 0 0 chr1 235518563 235518591 -46675073 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 240 324 0 0 chr1 235519626 235519697 -46673967 - L2 LINE L2 0 3272 3202 262 294 133 82 chr1 235519790 235519906 -46673758 + L2 LINE L2 2980 3089 -183 2393 91 3 0 chr1 235519906 235520202 -46673462 + AluSp SINE Alu 1 297 -16 262 294 133 82 chr1 235520202 235520364 -46673300 + L2 LINE L2 3089 3272 0 * 355 286 0 11 chr1 235520355 235520446 -46673218 - MIR SINE MIR -100 108 19 188 245 41 0 chr1 235520994 235521043 -46672621 + MIR SINE MIR 47 97 -165 2327 33 44 4 chr1 235521215 235521487 -46672177 + AluY SINE Alu 1 283 -28 2211 73 44 0 chr1 235521717 235522014 -46671650 + AluSq SINE Alu 1 309 0 317 257 40 10 chr1 235522464 235522565 -46671099 + MIR SINE MIR 30 133 -75 221 333 36 22 chr1 235523626 235523764 -46669900 - L2 LINE L2 -624 2690 2551 2624 52 3 0 chr1 235524809 235525117 -46668547 + AluSp SINE Alu 5 313 0 182 243 14 71 chr1 235526958 235527028 -46666636 + L2 LINE L2 3160 3225 -88 224 152 0 0 chr1 235527859 235527892 -46665772 + MIR SINE MIR 33 65 -143 2100 120 3 11 chr1 235527894 235528209 -46665455 - AluSx SINE Alu 0 313 1 553 248 31 12 chr1 235530070 235530231 -46663433 + MIR3 SINE MIR 18 181 -27 203 328 31 0 chr1 235530644 235530708 -46662956 + MIR SINE MIR 50 115 -147 182 337 11 22 chr1 235531216 235531308 -46662356 + MIR SINE MIR 17 107 -101 463 208 39 79 chr1 235531335 235531513 -46662151 + MIR SINE MIR 80 250 -12 2384 81 0 3 chr1 235531523 235531821 -46661843 - AluSg SINE Alu -13 297 1 249 139 0 0 chr1 235532771 235532814 -46660850 + (CA)n Simple_repeat Simple_repeat 1 43 0 207 162 0 0 chr1 235532862 235532899 -46660765 + (CA)n Simple_repeat Simple_repeat 1 37 0 409 231 46 28 chr1 235533643 235533751 -46659913 - MIR SINE MIR -74 188 79 334 226 24 73 chr1 235534590 235534714 -46658950 + MIR SINE MIR 48 165 -97 2337 91 0 29 chr1 235534952 235535259 -46658405 - AluSq SINE Alu -15 298 1 462 258 56 0 chr1 235535697 235535834 -46657830 - MIR SINE MIR -65 143 11 2539 87 3 0 chr1 235535865 235536177 -46657487 - AluSp SINE Alu 0 313 1 195 42 0 0 chr1 235537204 235537228 -46656436 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 228 305 53 42 chr1 235537693 235537788 -46655876 + L3 LINE CR1 1480 1575 -2 2229 129 3 3 chr1 235538365 235538675 -46654989 + AluSx SINE Alu 1 310 -2 375 267 95 125 chr1 235539033 235539400 -46654264 - L2 LINE L2 -4 3268 2913 199 364 11 11 chr1 235539646 235539734 -46653930 - MIR SINE MIR -66 142 55 201 233 0 0 chr1 235540206 235540249 -46653415 + (GGCTG)n Simple_repeat Simple_repeat 3 45 0 721 244 116 0 chr1 235540749 235540921 -46652743 - MIR SINE MIR -30 232 41 281 272 99 0 chr1 235541200 235541281 -46652383 + MIR3 SINE MIR 69 157 -51 258 32 0 0 chr1 235542696 235542727 -46650937 + (CA)n Simple_repeat Simple_repeat 1 31 0 427 245 7 58 chr1 235542796 235542935 -46650729 + MER5A DNA MER1_type 55 186 -3 2558 38 0 0 chr1 235543012 235543338 -46650326 - AluY SINE Alu 0 311 1 387 246 92 14 chr1 235543353 235543495 -46650169 - MIR SINE MIR -29 233 81 1755 118 4 4 chr1 235545139 235545376 -46648288 + AluSx SINE Alu 55 291 -21 2036 162 10 0 chr1 235548696 235549005 -46644659 - AluJb SINE Alu 0 312 1 2210 98 39 0 chr1 235549180 235549465 -46644199 - AluSq SINE Alu -17 296 1 2552 66 3 0 chr1 235550334 235550639 -46643025 - AluY SINE Alu -5 306 1 269 255 176 49 chr1 235550644 235550746 -46642918 + L2 LINE L2 3179 3293 -20 370 281 7 65 chr1 235550785 235550924 -46642740 + MIR SINE MIR 63 193 -69 270 263 68 75 chr1 235551083 235551216 -46642448 + L2 LINE L2 3170 3301 -12 22 35 0 0 chr1 235552584 235552613 -46641051 + GC_rich Low_complexity Low_complexity 1 29 0 230 304 255 10 chr1 235553846 235553948 -46639716 + MIR SINE MIR 3 129 -133 798 125 107 24 chr1 235553977 235554145 -46639519 - L1MD1 LINE L1 0 6242 6061 2034 129 0 11 chr1 235554146 235554455 -46639209 + AluSx SINE Alu 1 306 0 1733 157 4 0 chr1 235554483 235554738 -46638926 + AluSx SINE Alu 1 256 -56 350 270 32 81 chr1 235555236 235555435 -46638229 - MIR SINE MIR -9 199 9 321 291 0 0 chr1 235555982 235556068 -46637596 - L3b LINE CR1 -157 1426 1341 1644 170 24 17 chr1 235556129 235556417 -46637247 + AluJb SINE Alu 2 291 -21 733 203 0 0 chr1 235556603 235556726 -46636938 - FLAM_A SINE Alu -10 132 10 230 103 26 0 chr1 235556754 235556793 -46636871 - L1ME2 LINE L1 -10 6154 6115 545 276 101 32 chr1 235557168 235557385 -46636279 + MIR SINE MIR 25 256 -6 199 292 186 0 chr1 235557535 235557648 -46636016 - L3b LINE CR1 -198 1385 1252 198 297 47 0 chr1 235558031 235558095 -46635569 + L2 LINE L2 3206 3272 0 416 294 6 49 chr1 235558301 235558464 -46635200 + L3b LINE CR1 1290 1445 -138 193 313 98 18 chr1 235558573 235558685 -46634979 + MIR3 SINE MIR 81 201 -7 339 222 0 0 chr1 235559483 235559564 -46634100 + (TG)n Simple_repeat Simple_repeat 1 81 0 180 0 0 0 chr1 235560293 235560313 -46633351 + (A)n Simple_repeat Simple_repeat 1 20 0 2517 74 0 0 chr1 235560327 235560623 -46633041 + AluSp SINE Alu 1 296 -17 213 39 0 0 chr1 235561067 235561093 -46632571 + (CA)n Simple_repeat Simple_repeat 2 27 0 2068 153 12 12 chr1 235561830 235562171 -46631493 + MER58B DNA MER1_type 1 341 0 991 151 54 0 chr1 235562216 235562382 -46631282 - AluJb SINE Alu -2 310 136 315 307 108 39 chr1 235562465 235562696 -46630968 - MIR SINE MIR -6 256 10 185 359 16 0 chr1 235563376 235563440 -46630224 + L2 LINE L2 3234 3298 -15 258 81 0 0 chr1 235563442 235563479 -46630185 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 339 331 31 8 chr1 235563658 235563785 -46629879 - MIR SINE MIR -58 150 21 651 277 56 39 chr1 235564246 235564477 -46629187 - MIR SINE MIR 0 262 28 239 324 28 84 chr1 235564484 235564626 -46629038 + L2 LINE L2 3123 3256 -16 1296 177 11 23 chr1 235564629 235564895 -46628769 - L1PA16 LINE L1 -13 6153 5891 554 150 280 6 chr1 235566342 235566503 -46627161 + MIR SINE MIR 35 235 -27 266 289 24 12 chr1 235566528 235566611 -46627053 + MIR SINE MIR 104 187 -75 404 132 165 22 chr1 235566629 235566720 -46626944 + L1ME2 LINE L1 6059 6162 -2 1845 170 48 3 chr1 235566863 235567157 -46626507 + AluJb SINE Alu 2 308 -4 213 39 0 0 chr1 235567607 235567633 -46626031 + (TG)n Simple_repeat Simple_repeat 1 26 0 2616 54 0 13 chr1 235567974 235568287 -46625377 + AluY SINE Alu 1 309 -2 26 30 0 0 chr1 235569408 235569441 -46624223 + AT_rich Low_complexity Low_complexity 1 33 0 261 183 0 42 chr1 235570054 235570125 -46623539 - MER53 DNA DNA 0 189 122 875 144 0 0 chr1 235570208 235570333 -46623331 - FLAM_C SINE Alu -18 125 1 191 316 86 33 chr1 235570435 235570489 -46623175 - L2 LINE L2 -473 2841 2791 1519 173 22 69 chr1 235570489 235570807 -46622857 + AluJo SINE Alu 1 303 -9 191 316 86 33 chr1 235570807 235570904 -46622760 - L2 LINE L2 -523 2791 2682 375 354 0 0 chr1 235570974 235571070 -46622594 - L2 LINE L2 -19 3253 3158 701 175 7 7 chr1 235571447 235571590 -46622074 + L1M4 LINE L1 5000 5142 -1004 486 121 66 0 chr1 235571584 235571675 -46621989 - L1MB5 LINE L1 -326 5848 5752 * 775 140 35 7 chr1 235571675 235571817 -46621847 + L1MB8 LINE L1 6025 6171 -7 714 270 92 5 chr1 235571828 235572024 -46621640 + MIR SINE MIR 20 232 -30 750 101 0 0 chr1 235572045 235572144 -46621520 - AluJ/FLAM SINE Alu -212 100 2 2219 118 3 0 chr1 235572896 235573203 -46620461 - AluSq SINE Alu 0 308 1 2151 125 0 17 chr1 235573233 235573530 -46620134 - AluSx SINE Alu -20 292 1 2087 91 0 4 chr1 235573600 235573864 -46619800 - AluSg1 SINE Alu -46 263 1 1765 134 28 34 chr1 235573888 235574179 -46619485 - AluJb SINE Alu -11 301 13 284 302 85 28 chr1 235574191 235574297 -46619367 - MIR SINE MIR -117 145 34 655 177 8 8 chr1 235574451 235574575 -46619089 - MER5B DNA MER1_type -53 125 2 2144 135 0 3 chr1 235575310 235575614 -46618050 - AluSx SINE Alu -9 303 1 1024 147 0 60 chr1 235575821 235576005 -46617659 - AluJo SINE Alu -137 175 3 27 49 0 0 chr1 235576005 235576046 -46617618 + AT_rich Low_complexity Low_complexity 1 41 0 277 338 39 45 chr1 235576052 235576206 -46617458 - L2 LINE L2 -14 3258 3106 406 295 175 6 chr1 235576505 235576671 -46616993 - MIR SINE MIR -34 228 35 1838 167 10 3 chr1 235576737 235577031 -46616633 + AluJb SINE Alu 1 296 -16 908 238 61 76 chr1 235577122 235577356 -46616308 - LTR16A1 LTR ERVL 0 457 221 2162 121 0 0 chr1 235577356 235577676 -46615988 - AluSx SINE Alu 0 320 1 908 238 61 76 chr1 235577676 235577687 -46615977 - LTR16A1 LTR ERVL -236 221 211 1757 176 0 14 chr1 235577687 235577977 -46615687 - AluJb SINE Alu -26 286 1 908 238 61 76 chr1 235577977 235578187 -46615477 - LTR16A1 LTR ERVL -246 211 6 457 283 69 14 chr1 235578204 235578349 -46615315 + L2 LINE L2 3114 3266 -6 2062 131 28 7 chr1 235579027 235579318 -46614346 - AluSx SINE Alu -15 297 1 452 188 165 45 chr1 235579816 235579992 -46613672 + Charlie8 DNA MER1_type 29 225 -2192 2442 73 3 0 chr1 235580127 235580416 -46613248 + AluSp SINE Alu 1 290 -23 1981 127 16 3 chr1 235580418 235580734 -46612930 - L1MB3 LINE L1 -11 6172 5853 265 45 159 23 chr1 235580756 235580800 -46612864 - MIR3 SINE MIR -43 165 116 3754 64 118 4 chr1 235580876 235581409 -46612255 - LTR61 LTR ERV1 -1 594 1 270 0 0 0 chr1 235581658 235581688 -46611976 + (A)n Simple_repeat Simple_repeat 1 30 0 2373 106 0 0 chr1 235584091 235584392 -46609272 + AluSx SINE Alu 3 303 -9 465 311 86 86 chr1 235584925 235585333 -46608331 + L2 LINE L2 2782 3185 -87 1329 191 65 14 chr1 235585351 235585629 -46608035 - AluJo SINE Alu -20 292 1 1948 178 3 0 chr1 235585908 235586217 -46607447 - AluJo SINE Alu -2 310 1 4109 190 35 17 chr1 235586217 235587053 -46606611 - MER21B LTR ERV1 -11 852 2 292 224 448 8 chr1 235587086 235587211 -46606453 - MER5A DNA MER1_type 0 189 10 1771 119 89 11 chr1 235587369 235587638 -46606026 + AluJb SINE Alu 5 294 -18 2122 92 34 17 chr1 235588129 235588421 -46605243 - AluSp SINE Alu -16 297 1 916 146 0 0 chr1 235588536 235588666 -46604998 - FLAM_C SINE Alu -1 132 3 24 0 0 0 chr1 235588675 235588699 -46604965 + AT_rich Low_complexity Low_complexity 1 24 0 325 319 111 15 chr1 235588699 235588834 -46604830 - L1ME4a LINE L1 -4 6117 5970 642 188 7 47 chr1 235588890 235589039 -46604625 + L1MB8 LINE L1 6018 6160 -18 602 163 0 0 chr1 235589071 235589157 -46604507 - FRAM SINE Alu -51 125 40 25 0 0 0 chr1 235589167 235589192 -46604472 + AT_rich Low_complexity Low_complexity 1 25 0 225 114 0 0 chr1 235589293 235589328 -46604336 - Alu SINE Alu -265 35 1 491 323 45 22 chr1 235589392 235589615 -46604049 - MIR SINE MIR -10 252 25 2018 134 0 45 chr1 235590478 235590665 -46602999 - AluJb SINE Alu -12 300 131 1424 145 218 0 chr1 235590665 235590913 -46602751 + AluJo SINE Alu 1 302 0 2018 134 0 45 chr1 235590913 235591039 -46602625 - AluJb SINE Alu -181 131 1 1093 197 0 24 chr1 235591504 235591576 -46602088 - L1MA4 LINE L1 -1 6299 6227 2032 142 0 20 chr1 235591576 235591871 -46601793 - AluJo SINE Alu -23 289 1 1093 197 0 24 chr1 235591871 235592096 -46601568 - L1MA4 LINE L1 -73 6227 6031 2492 89 0 6 chr1 235592098 235592412 -46601252 - AluSx SINE Alu 0 312 1 230 272 175 19 chr1 235592501 235592604 -46601060 + MIR3 SINE MIR 40 158 -50 360 226 113 19 chr1 235593424 235593530 -46600134 - MIR SINE MIR -83 179 64 1912 149 34 17 chr1 235593683 235593979 -46599685 - AluSx SINE Alu -11 301 1 233 191 21 0 chr1 235593989 235594036 -46599628 - L2 LINE L2 0 3313 3266 2473 67 0 3 chr1 235594783 235595080 -46598584 - AluY SINE Alu -15 296 1 327 292 81 75 chr1 235595154 235595315 -46598349 + MER91B DNA MER1_type 25 186 -4 241 144 135 48 chr1 235595372 235595476 -46598188 - L1MC5 LINE L1 -20 7941 7829 21 0 0 0 chr1 235595744 235595765 -46597899 + AT_rich Low_complexity Low_complexity 1 21 0 811 235 99 25 chr1 235596343 235596586 -46597078 - MIR SINE MIR 0 262 2 593 307 44 27 chr1 235596604 235596671 -46596993 - MIR SINE MIR 0 262 198 2104 112 31 7 chr1 235596671 235596965 -46596699 - AluSc SINE Alu -8 301 1 593 307 44 27 chr1 235596965 235597122 -46596542 - MIR SINE MIR -64 198 34 2563 90 0 0 chr1 235597514 235597825 -46595839 - AluSx SINE Alu -1 311 1 666 269 137 13 chr1 235598476 235598551 -46595113 + L1M4 LINE L1 3859 3923 -2223 2306 109 0 0 chr1 235598551 235598853 -46594811 + AluSx SINE Alu 3 304 -8 666 269 137 13 chr1 235598853 235599332 -46594332 + L1M4 LINE L1 3923 4514 -1632 848 173 74 55 chr1 235599344 235599546 -46594118 + L1PA16 LINE L1 5941 6146 -20 1790 222 187 29 chr1 235599674 235600302 -46593362 + L1MDa LINE L1 38 565 -5975 2031 121 0 10 chr1 235600302 235600608 -46593056 + AluSx SINE Alu 1 303 -9 1790 222 187 29 chr1 235600608 235600817 -46592847 + L1MDa LINE L1 565 1327 -5213 1327 145 0 19 chr1 235600817 235601031 -46592633 + AluJo SINE Alu 86 295 -17 1834 144 75 29 chr1 235601031 235601407 -46592257 + L1MDa LINE L1 1318 1710 -4830 632 188 0 0 chr1 235601439 235601540 -46592124 + FLAM_A SINE Alu 1 101 -41 4266 151 30 67 chr1 235601541 235601870 -46591794 + L1MB5 LINE L1 5195 5535 -639 2146 113 0 0 chr1 235601870 235602171 -46591493 + AluSx SINE Alu 1 301 -11 4266 151 30 67 chr1 235602171 235602671 -46590993 + L1MB5 LINE L1 5535 5987 -187 216 0 0 0 chr1 235602671 235602695 -46590969 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 4266 151 30 67 chr1 235602695 235602832 -46590832 + L1MB5 LINE L1 5987 6128 -46 273 29 0 0 chr1 235602840 235602874 -46590790 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2098 115 0 0 chr1 235602874 235603161 -46590503 - AluSq SINE Alu -26 287 1 2109 96 0 0 chr1 235603197 235603477 -46590187 + AluSg SINE Alu 15 294 -16 507 222 82 93 chr1 235603519 235603789 -46589875 + L1MC4 LINE L1 7772 8038 -4 2229 113 3 0 chr1 235603789 235604100 -46589564 + AluSp SINE Alu 1 312 -1 1279 276 42 29 chr1 235604135 235604488 -46589176 + L1ME3A LINE L1 5162 5509 -661 1442 193 10 23 chr1 235604488 235604788 -46588876 - AluJo SINE Alu -16 296 1 1279 276 42 29 chr1 235604788 235605219 -46588445 + L1ME3A LINE L1 5509 5955 -215 433 281 41 8 chr1 235605747 235605868 -46587796 + MIR SINE MIR 20 144 -64 1002 180 95 0 chr1 235605889 235606078 -46587586 + AluJo SINE Alu 87 293 -19 2235 110 0 0 chr1 235607408 235607709 -46585955 + AluSx SINE Alu 1 301 -11 3391 221 90 24 chr1 235607756 235608541 -46585123 + L1MC4 LINE L1 6485 7349 -693 1576 155 45 7 chr1 235608541 235608832 -46584832 - AluJo SINE Alu -10 302 1 3391 221 90 24 chr1 235608832 235609023 -46584641 + L1MC4 LINE L1 7349 7526 -516 460 217 0 22 chr1 235609036 235609128 -46584536 + MER21B LTR ERV1 1 90 -773 45527 34 1 3 chr1 235609172 235615335 -46578329 - L1PA3 LINE L1 -1 6154 1 3144 228 55 38 chr1 235615337 235615524 -46578140 + MER21B LTR ERV1 17 199 -664 2067 133 0 0 chr1 235615524 235615824 -46577840 + AluSg SINE Alu 1 300 -10 3144 228 55 38 chr1 235615824 235616418 -46577246 + MER21B LTR ERV1 199 811 -52 1337 228 104 32 chr1 235616441 235616803 -46576861 + L1MC4 LINE L1 7533 7938 -104 198 0 0 0 chr1 235616803 235616825 -46576839 + (CA)n Simple_repeat Simple_repeat 2 23 0 1337 228 104 32 chr1 235616825 235616932 -46576732 + L1MC4 LINE L1 7938 8036 -6 1933 142 10 7 chr1 235616965 235617274 -46576390 - AluJb SINE Alu -2 310 1 1373 162 67 8 chr1 235617360 235617613 -46576051 - AluJb SINE Alu -44 268 1 840 229 108 14 chr1 235617866 235618080 -46575584 - MIR SINE MIR 0 262 29 1656 149 0 67 chr1 235618080 235618249 -46575415 - AluJb SINE Alu -17 295 155 2193 93 0 10 chr1 235618249 235618550 -46575114 - AluSq SINE Alu -15 298 1 1656 149 0 67 chr1 235618550 235618695 -46574969 - AluJb SINE Alu -157 155 2 862 199 0 6 chr1 235619186 235619367 -46574297 + FRAM SINE Alu 1 172 -4 700 170 15 26 chr1 235619370 235619637 -46574027 + GA-rich Low_complexity Low_complexity 1 263 0 950 116 11 22 chr1 235619644 235619760 -46573904 + (GGAA)n Simple_repeat Simple_repeat 2 117 -63 2186 58 41 3 chr1 235619760 235620051 -46573613 + AluY SINE Alu 1 302 -9 950 116 11 22 chr1 235620051 235620115 -46573549 + (GGAA)n Simple_repeat Simple_repeat 117 180 0 362 254 9 0 chr1 235620105 235620215 -46573449 + A-rich Low_complexity Low_complexity 4 114 0 * 389 293 57 16 chr1 235620490 235620613 -46573051 - MER94 DNA DNA -6 128 1 192 254 0 73 chr1 235621688 235621743 -46571921 - L2 LINE L2 -24 3289 3239 1704 179 0 3 chr1 235621751 235622059 -46571605 - AluJb SINE Alu -1 311 5 265 203 0 0 chr1 235622069 235622128 -46571536 - FAM SINE Alu 0 179 121 1522 137 16 24 chr1 235622130 235622379 -46571285 - AluSx SINE Alu -16 296 50 1630 151 0 55 chr1 235622775 235622909 -46570755 + AluJo SINE Alu 1 141 -171 1731 166 7 3 chr1 235622909 235623198 -46570466 - AluJo SINE Alu -22 290 1 1630 151 0 55 chr1 235623198 235623375 -46570289 + AluJo SINE Alu 141 295 -17 183 278 19 0 chr1 235623778 235623832 -46569832 - L2 LINE L2 -1015 2299 2245 289 347 126 10 chr1 235624068 235624267 -46569397 - MIR SINE MIR -15 247 26 217 254 119 0 chr1 235626370 235626437 -46567227 + MIR SINE MIR 4 78 -184 * 419 230 30 0 chr1 235626433 235626533 -46567131 - L2 LINE L2 -1 3271 3169 2062 84 0 14 chr1 235627000 235627284 -46566380 - AluSx SINE Alu -22 290 11 1712 145 10 10 chr1 235627950 235628240 -46565424 - AluSx SINE Alu -22 290 1 1557 114 9 9 chr1 235628511 235628739 -46564925 + AluSx SINE Alu 2 229 -83 799 193 105 55 chr1 235631271 235631509 -46562155 + MIR SINE MIR 13 262 0 238 324 152 65 chr1 235632889 235633516 -46560148 - L2 LINE L2 -5 3267 2502 330 291 47 24 chr1 235634018 235634145 -46559519 - L2 LINE L2 -18 3254 3125 255 339 63 8 chr1 235634976 235635103 -46558561 - L2 LINE L2 -219 3053 2920 507 286 71 55 chr1 235635511 235635749 -46557915 + MIR SINE MIR 10 251 -11 306 67 0 0 chr1 235635959 235636004 -46557660 + (GA)n Simple_repeat Simple_repeat 1 45 0 188 331 33 25 chr1 235636476 235636597 -46557067 - L2 LINE L2 -456 2858 2737 258 239 37 28 chr1 235636630 235636739 -46556925 - L1MC5 LINE L1 -38 7923 7814 243 293 90 30 chr1 235636739 235636872 -46556792 - L2 LINE L2 -566 2748 2608 599 324 70 16 chr1 235636876 235637132 -46556532 - L2 LINE L2 -1 3312 3043 364 290 49 77 chr1 235637168 235637454 -46556210 - L2 LINE L2 -661 2653 2376 23 0 0 0 chr1 235639274 235639297 -46554367 + GC_rich Low_complexity Low_complexity 1 23 0 196 333 0 0 chr1 235639721 235639766 -46553898 - L2 LINE L2 -17 3255 3211 412 292 65 36 chr1 235639840 235640008 -46553656 - MIR SINE MIR -16 246 74 2344 88 0 0 chr1 235640182 235640489 -46553175 - AluSc SINE Alu -2 307 1 231 287 0 23 chr1 235640610 235640697 -46552967 + GA-rich Low_complexity Low_complexity 2 86 0 1882 154 0 7 chr1 235641201 235641506 -46552158 + AluJb SINE Alu 1 303 -9 2011 114 14 0 chr1 235641655 235641945 -46551719 + AluSg SINE Alu 1 294 -16 277 317 20 10 chr1 235641949 235642050 -46551614 + L2 LINE L2 3149 3250 -22 220 254 119 0 chr1 235642202 235642261 -46551403 - L2 LINE L2 -7 3265 3200 1364 155 155 19 chr1 235642663 235642823 -46550841 - AluJo SINE Alu 0 302 165 221 0 35 0 chr1 235642823 235642852 -46550812 + (TA)n Simple_repeat Simple_repeat 2 31 0 1364 155 155 19 chr1 235642852 235642956 -46550708 - AluJo SINE Alu -137 165 2 198 71 0 0 chr1 235645778 235645806 -46547858 + (TGG)n Simple_repeat Simple_repeat 2 29 0 511 277 41 15 chr1 235646168 235646363 -46547301 - MIR3 SINE MIR -7 201 2 196 152 0 0 chr1 235647032 235647065 -46546599 - MIR SINE MIR -116 146 114 233 119 24 0 chr1 235648317 235648359 -46545305 + GA-rich Low_complexity Low_complexity 2 44 0 486 276 7 21 chr1 235651337 235651482 -46542182 + MIR3 SINE MIR 33 175 -33 182 91 30 0 chr1 235653647 235653680 -46539984 + CT-rich Low_complexity Low_complexity 4 37 0 806 279 57 12 chr1 235655589 235655833 -46537831 + MIR SINE MIR 2 256 -6 292 222 81 0 chr1 235656554 235656653 -46537011 - MIR3 SINE MIR -21 187 81 287 65 22 0 chr1 235658045 235658091 -46535573 + (CACAG)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr1 235658575 235658599 -46535065 + (TGGGGG)n Simple_repeat Simple_repeat 5 28 0 230 283 0 0 chr1 235658797 235658850 -46534814 + C-rich Low_complexity Low_complexity 3 55 0 275 226 32 0 chr1 235660296 235660358 -46533306 - MIR SINE MIR -105 157 94 268 240 106 161 chr1 235660876 235661130 -46532534 + L3 LINE CR1 1336 1575 -2 223 310 14 0 chr1 235662587 235662658 -46531006 - L2 LINE L2 -3 3310 3239 228 35 0 0 chr1 235662996 235663025 -46530639 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 94 0 0 chr1 235664436 235664468 -46529196 + (TC)n Simple_repeat Simple_repeat 1 32 0 249 232 0 0 chr1 235665202 235665271 -46528393 + (CA)n Simple_repeat Simple_repeat 1 69 0 30 77 0 0 chr1 235665365 235665430 -46528234 + GC_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr1 235665520 235665549 -46528115 + GC_rich Low_complexity Low_complexity 1 29 0 391 323 77 31 chr1 235666565 235666890 -46526774 - L2 LINE L2 -3 3269 2930 298 286 105 0 chr1 235667353 235667458 -46526206 - MIR SINE MIR -55 207 92 342 255 39 10 chr1 235667773 235667875 -46525789 + MIR SINE MIR 99 203 -59 997 115 0 0 chr1 235668903 235669033 -46524631 + AluSq/x SINE Alu 1 130 -183 2318 100 30 0 chr1 235669054 235669355 -46524309 + AluSx SINE Alu 1 310 -2 1450 298 65 14 chr1 235670076 235670375 -46523289 + L2 LINE L2 1408 1690 -1624 2333 93 0 19 chr1 235670375 235670687 -46522977 + AluSg SINE Alu 1 306 -4 1450 298 65 14 chr1 235670687 235671044 -46522620 + L2 LINE L2 1690 2098 -1216 260 279 0 0 chr1 235671102 235671163 -46522501 + L2 LINE L2 2259 2319 -995 929 216 114 28 chr1 235671163 235671417 -46522247 - MLT1C LTR MaLR 0 467 192 1320 127 0 0 chr1 235671465 235671638 -46522026 - AluSp SINE Alu -9 304 132 2306 92 0 7 chr1 235671654 235671949 -46521715 - AluSq SINE Alu -20 293 1 756 130 162 7 chr1 235671952 235672106 -46521558 - MLT1C LTR MaLR -289 178 1 1522 279 105 17 chr1 235672106 235672913 -46520751 + L2 LINE L2 2315 3202 -111 2442 98 0 0 chr1 235672960 235673265 -46520399 - AluSc SINE Alu -4 305 1 21 36 0 0 chr1 235673274 235673302 -46520362 + AT_rich Low_complexity Low_complexity 1 28 0 2277 110 3 0 chr1 235673370 235673678 -46519986 - AluSg SINE Alu 0 310 2 285 236 0 67 chr1 235673820 235673909 -46519755 + L2 LINE L2 1334 1416 -1898 575 189 111 7 chr1 235674027 235674180 -46519484 + MIR SINE MIR 82 250 -12 375 231 38 94 chr1 235674203 235674363 -46519301 - MIR SINE MIR -79 183 33 2020 143 27 3 chr1 235674538 235674839 -46518825 - AluJb SINE Alu -4 308 1 304 306 12 0 chr1 235675661 235675746 -46517918 + MIR3 SINE MIR 116 201 -7 2050 138 7 0 chr1 235675870 235676167 -46517497 - AluSx SINE Alu -13 299 1 510 259 82 6 chr1 235676168 235676338 -46517326 - MIR SINE MIR -65 197 15 306 0 0 0 chr1 235676497 235676531 -46517133 + (TG)n Simple_repeat Simple_repeat 2 35 0 559 302 145 22 chr1 235676568 235676926 -46516738 + L3 LINE CR1 796 1197 -380 2263 130 7 0 chr1 235676928 235677235 -46516429 + AluSx SINE Alu 1 309 -3 365 262 113 0 chr1 235677239 235677380 -46516284 + MIR SINE MIR 85 241 -21 184 314 20 0 chr1 235677986 235678037 -46515627 - MIR3 SINE MIR -10 198 147 444 249 66 33 chr1 235678046 235678227 -46515437 - MER5A DNA MER1_type -2 187 1 238 289 0 0 chr1 235679164 235679240 -46514424 - HsTC2 DNA Tc2 -1818 80 5 2119 122 3 0 chr1 235679241 235679557 -46514107 + AluSx SINE Alu 1 317 0 2475 62 14 0 chr1 235679625 235679914 -46513750 - AluY SINE Alu -18 293 1 207 350 70 0 chr1 235680079 235680179 -46513485 - MIR SINE MIR -65 143 37 1909 142 71 12 chr1 235680195 235680558 -46513106 + L1MB5 LINE L1 5735 6126 -48 2270 110 10 0 chr1 235680558 235680857 -46512807 + AluSg SINE Alu 1 302 -8 1909 142 71 12 chr1 235680857 235680902 -46512762 + L1MB5 LINE L1 6126 6167 -7 903 86 26 0 chr1 235680904 235681055 -46512609 + (GGAA)n Simple_repeat Simple_repeat 3 157 0 207 340 19 10 chr1 235681273 235681376 -46512288 + GA-rich Low_complexity Low_complexity 5 108 0 434 294 45 77 chr1 235681929 235682215 -46511449 + L2 LINE L2 3026 3302 -11 665 295 60 59 chr1 235682339 235682617 -46511047 + L2 LINE L2 2702 2978 -335 562 80 0 0 chr1 235682617 235682692 -46510972 + tRNA-Lys-AAA tRNA tRNA 1 75 -1 2146 105 24 7 chr1 235682699 235682994 -46510670 + AluSg SINE Alu 1 300 -10 665 295 60 59 chr1 235682994 235683227 -46510437 + L2 LINE L2 2983 3224 -89 273 301 106 60 chr1 235683238 235683367 -46510297 + LTR16C LTR ERVL 2 145 -346 2087 118 35 32 chr1 235683367 235683741 -46509923 + THE1C LTR MaLR 1 375 0 273 301 106 60 chr1 235683741 235683810 -46509854 + LTR16C LTR ERVL 145 209 -282 1000 265 3 58 chr1 235683991 235684250 -46509414 + LTR16C LTR ERVL 198 439 -52 3718 136 25 8 chr1 235684250 235684903 -46508761 + L1MB7 LINE L1 5516 6179 -5 1000 265 3 58 chr1 235684903 235684952 -46508712 + LTR16C LTR ERVL 439 489 -2 298 184 0 105 chr1 235684953 235685029 -46508635 + L2 LINE L2 3246 3313 0 520 145 29 33 chr1 235685242 235685489 -46508175 + (TG)n Simple_repeat Simple_repeat 1 245 0 326 257 18 18 chr1 235686533 235686642 -46507022 - L2 LINE L2 -6 3266 3158 550 277 102 11 chr1 235686719 235686896 -46506768 - MIR SINE MIR -37 225 33 1756 112 0 4 chr1 235686909 235687169 -46506495 - AluSx SINE Alu 0 309 51 1999 133 4 0 chr1 235687504 235687782 -46505882 - AluJo SINE Alu -22 290 12 216 133 50 0 chr1 235688151 235688211 -46505453 + (TA)n Simple_repeat Simple_repeat 1 63 0 216 67 0 0 chr1 235688499 235688529 -46505135 + (TG)n Simple_repeat Simple_repeat 1 30 0 2327 136 36 45 chr1 235688532 235689002 -46504662 - L1MC1 LINE L1 -11 6322 5857 1979 140 10 7 chr1 235689284 235689591 -46504073 - AluSq SINE Alu -1 312 5 977 279 85 36 chr1 235689938 235690351 -46503313 - LTR16A LTR ERVL 0 450 18 203 269 37 90 chr1 235691390 235691524 -46502140 + MIR3 SINE MIR 77 203 -5 4531 102 7 1 chr1 235691901 235692587 -46501077 + L1PB2 LINE L1 5460 6149 -2 330 262 101 40 chr1 235693567 235693716 -46499948 + MIR SINE MIR 49 206 -56 29 0 0 0 chr1 235693883 235693912 -46499752 + AT_rich Low_complexity Low_complexity 1 29 0 1841 164 3 37 chr1 235694044 235694367 -46499297 + AluJo SINE Alu 1 312 0 514 205 0 13 chr1 235694371 235694522 -46499142 + GA-rich Low_complexity Low_complexity 2 150 0 225 319 14 0 chr1 235695147 235695216 -46498448 + L1ME2 LINE L1 6008 6077 -87 966 217 14 14 chr1 235695616 235695833 -46497831 + U3 snRNA snRNA 1 217 0 496 369 92 14 chr1 235695843 235696499 -46497165 - L2 LINE L2 -834 2480 1774 221 179 0 0 chr1 235696806 235696845 -46496819 + A-rich Low_complexity Low_complexity 1 39 0 451 329 26 0 chr1 235697236 235697391 -46496273 - LTR33 LTR ERVL -360 161 3 187 307 69 30 chr1 235697658 235697759 -46495905 + MIR SINE MIR 114 218 -44 369 328 86 11 chr1 235698058 235698232 -46495432 - MIR3 SINE MIR -3 205 19 341 285 20 10 chr1 235698466 235698574 -46495090 - L2 LINE L2 -6 3307 3199 1522 232 68 18 chr1 235699790 235700230 -46493434 - MLT1C LTR MaLR 0 467 6 32 75 0 0 chr1 235702814 235702881 -46490783 + AT_rich Low_complexity Low_complexity 1 67 0 226 284 11 45 chr1 235703548 235703636 -46490028 + MIR SINE MIR 151 235 -27 193 283 192 17 chr1 235703837 235703957 -46489707 - L2 LINE L2 -2402 912 772 261 0 0 0 chr1 235704128 235704157 -46489507 + (CAA)n Simple_repeat Simple_repeat 2 30 0 586 218 106 7 chr1 235706539 235706731 -46486933 - MIR SINE MIR -2 260 13 406 254 195 43 chr1 235707251 235707386 -46486278 + MIR SINE MIR 46 218 -44 2409 60 19 29 chr1 235707386 235707700 -46485964 + AluY SINE Alu 1 311 0 406 254 195 43 chr1 235707700 235707749 -46485915 + MIR SINE MIR 218 258 -4 1706 116 12 0 chr1 235708887 235709128 -46484536 + AluJo SINE Alu 49 292 -20 2119 91 0 0 chr1 235709143 235709406 -46484258 + AluSx SINE Alu 1 263 -49 207 0 0 0 chr1 235709407 235709430 -46484234 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 445 268 108 13 chr1 235709728 235709885 -46483779 + MIR SINE MIR 26 197 -65 2244 111 0 0 chr1 235710074 235710372 -46483292 + AluSx SINE Alu 1 298 -14 364 314 29 0 chr1 235710951 235711088 -46482576 + MIR3 SINE MIR 38 178 -30 1517 197 36 6 chr1 235711363 235711693 -46481971 + MER58B DNA MER1_type 2 341 0 443 248 44 15 chr1 235711790 235711927 -46481737 - L1ME4a LINE L1 -4 6117 5977 2061 103 39 3 chr1 235712048 235712330 -46481334 + AluSx SINE Alu 1 292 -20 189 229 0 0 chr1 235712659 235712707 -46480957 + L2 LINE L2 3207 3254 -18 5884 48 4 0 chr1 235712877 235714228 -46479436 - L1PA5 LINE L1 -149 6005 4652 3274 139 34 4 chr1 235714228 235714780 -46478884 + Tigger1 DNA MER2_type 113 681 -1737 1978 142 12 6 chr1 235714917 235715261 -46478403 + Tigger1 DNA MER2_type 714 1059 -1359 795 208 0 6 chr1 235715292 235715460 -46478204 + Tigger1 DNA MER2_type 2252 2418 0 1487 184 13 41 chr1 235715681 235715997 -46477667 - AluSx SINE Alu -3 309 3 34 108 0 0 chr1 235717213 235717352 -46476312 + AT_rich Low_complexity Low_complexity 1 139 0 1839 107 0 0 chr1 235717676 235717919 -46475745 - AluSc SINE Alu -10 299 57 2205 151 32 53 chr1 235718067 235718209 -46475455 - MER65C LTR ERV1 0 461 317 808 147 7 0 chr1 235718209 235718345 -46475319 + L1PA15 LINE L1 6016 6152 -13 2205 151 32 53 chr1 235718345 235718673 -46474991 - MER65C LTR ERV1 -144 317 1 1970 155 5 47 chr1 235719164 235719544 -46474120 - MLT1A1 LTR MaLR 0 365 2 714 264 83 25 chr1 235721329 235721571 -46472093 + MIR SINE MIR 7 262 0 965 214 39 18 chr1 235721757 235722038 -46471626 + L1MB8 LINE L1 5890 6176 -2 1220 144 0 83 chr1 235722048 235722096 -46471568 + AluJo SINE Alu 83 133 -179 1983 139 3 3 chr1 235722096 235722391 -46471273 + AluSx SINE Alu 1 295 -17 1220 144 0 83 chr1 235722391 235722571 -46471093 + AluJo SINE Alu 133 292 -20 225 0 0 0 chr1 235722909 235722934 -46470730 + (TA)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr1 235723069 235723090 -46470574 + (CA)n Simple_repeat Simple_repeat 2 22 0 622 320 17 22 chr1 235723747 235723978 -46469686 + MIR SINE MIR 17 246 -16 1136 113 0 0 chr1 235725090 235725281 -46468383 - AluSc SINE Alu 0 322 132 2355 191 63 2 chr1 235725629 235726074 -46467590 - MER70A LTR ERVL 0 472 1 22 35 0 0 chr1 235726206 235726235 -46467429 + AT_rich Low_complexity Low_complexity 1 29 0 214 296 0 0 chr1 235727132 235727186 -46466478 - L2 LINE L2 -5 3267 3214 250 265 140 29 chr1 235727443 235727579 -46466085 - MIR SINE MIR -92 170 20 216 224 0 0 chr1 235727858 235727925 -46465739 + (CA)n Simple_repeat Simple_repeat 2 68 0 2919 6 0 0 chr1 235727954 235728271 -46465393 - AluYb8 SINE Alu -1 317 1 237 266 0 0 chr1 235728333 235728427 -46465237 + GA-rich Low_complexity Low_complexity 3 96 0 871 226 6 6 chr1 235728827 235729004 -46464660 - MER5B DNA MER1_type -1 177 1 316 318 70 16 chr1 235729151 235729280 -46464384 + HAL1 LINE L1 818 953 -1554 259 259 12 0 chr1 235729505 235729586 -46464078 + (TA)n Simple_repeat Simple_repeat 2 83 0 503 246 47 47 chr1 235729648 235729778 -46463886 + L1MC5 LINE L1 7701 7833 -128 2048 180 56 15 chr1 235729778 235730189 -46463475 - MSTA LTR MaLR 0 428 1 503 246 47 47 chr1 235730189 235730290 -46463374 + L1MC5 LINE L1 7832 7932 -29 340 245 38 19 chr1 235730809 235730915 -46462749 - L2 LINE L2 0 3313 3206 464 323 57 40 chr1 235731027 235731064 -46462600 - MER57A-int LTR ERV1 -502 6708 6673 620 306 14 0 chr1 235731064 235731273 -46462391 - MER70-int LTR ERVL -337 4686 4475 464 323 57 40 chr1 235731273 235731552 -46462112 - MER57A-int LTR ERV1 -537 6673 4321 957 233 32 109 chr1 235732016 235732420 -46461244 - MER57A-int LTR ERV1 -1341 6196 5824 2806 232 50 76 chr1 235732747 235733260 -46460404 - MER57A-int LTR ERV1 -1497 3439 2914 1953 175 62 52 chr1 235733260 235733631 -46460033 + MSTB LTR MaLR 1 378 -48 2422 76 0 0 chr1 235733631 235733932 -46459732 + AluY SINE Alu 1 301 -10 1953 175 62 52 chr1 235733932 235733982 -46459682 + MSTB LTR MaLR 378 426 0 2806 232 50 76 chr1 235733982 235735553 -46458111 - MER57A-int LTR ERV1 -2022 2914 1916 260 186 0 0 chr1 235735616 235735659 -46458005 - MER34 LTR ERV1 0 542 500 360 179 49 81 chr1 235735667 235735718 -46457946 - MER34 LTR ERV1 -288 254 203 2340 84 0 34 chr1 235735718 235736040 -46457624 - AluY SINE Alu 0 311 1 360 179 49 81 chr1 235736040 235736111 -46457553 - MER34 LTR ERV1 -339 203 136 260 273 40 0 chr1 235736113 235736212 -46457452 - MER57A-int LTR ERV1 -2477 2394 2292 939 217 52 47 chr1 235736234 235736621 -46457043 - MER57A-int LTR ERV1 -3470 1466 1078 1097 202 40 21 chr1 235738188 235738522 -46455142 - MLT1B LTR MaLR 0 390 4 486 201 5 38 chr1 235740969 235741153 -46452511 + CT-rich Low_complexity Low_complexity 3 180 0 364 287 0 16 chr1 235741249 235741371 -46452293 - MER34C LTR ERV1 -172 413 294 509 270 107 52 chr1 235742024 235742257 -46451407 - MER57A-int LTR ERV1 -7289 248 3 459 264 115 31 chr1 235742264 235742644 -46451020 - MER57A LTR ERV1 -12 390 1 1326 205 40 46 chr1 235743834 235744137 -46449527 + AluJb SINE Alu 1 301 -11 370 329 129 6 chr1 235744424 235744594 -46449070 - MIR SINE MIR -71 191 1 21 0 0 0 chr1 235745806 235745827 -46447837 + AT_rich Low_complexity Low_complexity 1 21 0 1065 189 8 13 chr1 235746645 235746883 -46446781 - L1MCb LINE L1 -5077 968 732 571 283 12 12 chr1 235747022 235747195 -46446469 - MIR SINE MIR -78 184 12 766 231 61 38 chr1 235747409 235747621 -46446043 - MIR SINE MIR -44 218 2 8296 190 41 16 chr1 235748319 235751073 -46442591 - L1MA9 LINE L1 -377 5935 3114 570 309 77 9 chr1 235751637 235751857 -46441807 + MIR SINE MIR 2 236 -26 739 143 41 7 chr1 235753104 235753251 -46440413 + MLT1A1 LTR MaLR 1 152 -213 244 232 259 9 chr1 235753378 235753490 -46440174 - L2 LINE L2 -228 3085 2946 774 192 154 0 chr1 235753500 235753682 -46439982 + MLT1A1 LTR MaLR 156 365 0 337 357 91 32 chr1 235753704 235754095 -46439569 + L2 LINE L2 2640 3083 -230 181 0 69 0 chr1 235754235 235754264 -46439400 + (TAATG)n Simple_repeat Simple_repeat 5 35 0 439 320 93 66 chr1 235754401 235754576 -46439088 - LTR33A LTR ERVL -44 479 310 461 46 0 0 chr1 235754576 235754641 -46439023 + L1PA6 LINE L1 6090 6154 0 439 320 93 66 chr1 235754641 235754874 -46438790 - LTR33A LTR ERVL -213 310 60 27 29 0 0 chr1 235755296 235755330 -46438334 + AT_rich Low_complexity Low_complexity 1 34 0 269 319 74 15 chr1 235755387 235755522 -46438142 - MIR SINE MIR -29 233 91 2077 115 45 3 chr1 235755779 235756067 -46437597 + AluSx SINE Alu 1 300 -12 291 329 58 7 chr1 235756804 235756941 -46436723 + MIR SINE MIR 12 155 -107 25 0 0 0 chr1 235757014 235757039 -46436625 + AT_rich Low_complexity Low_complexity 1 25 0 276 270 56 0 chr1 235757803 235757892 -46435772 - MIR SINE MIR -16 246 153 638 306 50 13 chr1 235758111 235758412 -46435252 + MER46C DNA MER2_type 20 331 -7 323 284 23 11 chr1 235758412 235758500 -46435164 - MIR SINE MIR -98 164 76 1893 142 22 0 chr1 235758547 235758846 -46434818 + AluSx SINE Alu 1 305 0 1923 153 0 0 chr1 235759655 235759937 -46433727 - AluSx SINE Alu -30 282 1 374 57 19 0 chr1 235760171 235760224 -46433440 + (TAGA)n Simple_repeat Simple_repeat 2 55 0 293 122 54 0 chr1 235761243 235761317 -46432347 + (TA)n Simple_repeat Simple_repeat 2 79 0 425 254 57 62 chr1 235761907 235762116 -46431548 - MLT1K LTR MaLR -158 430 223 2084 168 89 2 chr1 235762160 235762554 -46431110 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr1 235763140 235763161 -46430503 + AT_rich Low_complexity Low_complexity 1 21 0 2038 123 0 4 chr1 235763450 235763727 -46429937 + AluSg SINE Alu 5 280 -30 380 281 76 12 chr1 235763780 235763951 -46429713 + MIR SINE MIR 81 262 0 459 98 74 0 chr1 235765494 235765657 -46428007 + (TA)n Simple_repeat Simple_repeat 1 175 0 1710 175 31 8 chr1 235765882 235766237 -46427427 - L1MA6 LINE L1 0 6300 5938 644 292 59 9 chr1 235766522 235766741 -46426923 + MIR SINE MIR 26 255 -7 202 174 43 0 chr1 235766768 235766814 -46426850 + GA-rich Low_complexity Low_complexity 3 50 0 1976 148 107 18 chr1 235768364 235768755 -46424909 - MSTA LTR MaLR -2 426 1 353 330 138 59 chr1 235769039 235769511 -46424153 + L2 LINE L2 2235 2743 -571 200 246 0 43 chr1 235769587 235769656 -46424008 + L2 LINE L2 2872 2937 -335 470 266 203 10 chr1 235769896 235770103 -46423561 - MIR SINE MIR -9 253 7 246 180 0 0 chr1 235770275 235770325 -46423339 + L1MA6 LINE L1 6251 6300 0 1408 123 8 0 chr1 235770799 235771034 -46422630 + L1MA5A LINE L1 6059 6295 -2 717 252 7 7 chr1 235771036 235771191 -46422473 + AluJo SINE Alu 1 155 -157 693 252 60 90 chr1 235771351 235771716 -46421948 + L2 LINE L2 2959 3312 -1 309 278 52 17 chr1 235771976 235772149 -46421515 - L1 LINE L1 -1087 5059 4881 1468 205 43 0 chr1 235772331 235772658 -46421006 + L1 LINE L1 3545 3885 -2261 23 0 0 0 chr1 235772722 235772745 -46420919 + AT_rich Low_complexity Low_complexity 1 23 0 1237 206 39 52 chr1 235772859 235773189 -46420475 - MLT2D LTR ERVL 0 414 89 2043 142 7 0 chr1 235777154 235777456 -46416208 - AluJb SINE Alu -8 304 1 221 271 82 12 chr1 235777533 235777618 -46416046 - MIR3 SINE MIR -51 157 67 302 278 52 125 chr1 235777896 235778223 -46415441 + L1M2 LINE L1 830 1132 -5717 891 190 15 54 chr1 235778985 235779190 -46414474 - MIR SINE MIR -21 241 45 189 309 74 12 chr1 235779761 235779842 -46413822 + L2 LINE L2 3138 3223 -49 181 257 0 57 chr1 235779902 235779972 -46413692 - MER5A DNA MER1_type -48 141 76 252 135 0 122 chr1 235780615 235780689 -46412975 + MIR SINE MIR 81 145 -63 1544 163 31 16 chr1 235782445 235782703 -46410961 + AluJb SINE Alu 6 267 -45 1683 238 56 9 chr1 235783039 235783467 -46410197 + MER74A LTR ERVL 98 545 -13 29826 67 12 3 chr1 235783702 235787864 -46405800 + L1P LINE L1 579 4778 -1368 280 200 0 0 chr1 235788096 235788141 -46405523 + L2 LINE L2 3251 3295 -18 419 331 141 0 chr1 235788407 235788670 -46404994 + L2 LINE L2 3014 3313 0 1028 107 0 0 chr1 235790008 235790157 -46403507 + L1PA10 LINE L1 5999 6147 -21 23 68 0 0 chr1 235790479 235790523 -46403141 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr1 235790672 235790704 -46402960 + AT_rich Low_complexity Low_complexity 1 32 0 42 36 0 0 chr1 235791140 235791196 -46402468 + AT_rich Low_complexity Low_complexity 1 56 0 5147 191 101 72 chr1 235791256 235791817 -46401847 - L1MC3 LINE L1 -18 7767 7224 259 267 0 0 chr1 235791817 235791892 -46401772 - MLT1F1 LTR MaLR -458 109 35 5147 191 101 72 chr1 235791892 235793052 -46400612 - L1MC3 LINE L1 -561 7224 5919 287 254 72 98 chr1 235793738 235794002 -46399662 - L2 LINE L2 -25 3247 2991 264 343 186 33 chr1 235794434 235794833 -46398831 - L2 LINE L2 -1 3271 2812 2272 116 0 0 chr1 235794896 235795199 -46398465 - AluSx SINE Alu -9 303 1 214 203 188 0 chr1 235795294 235795363 -46398301 - MIR SINE MIR -111 151 70 191 200 29 0 chr1 235796239 235796274 -46397390 + L2 LINE L2 3211 3246 -26 2037 103 0 0 chr1 235796526 235796797 -46396867 + AluSc SINE Alu 35 305 -4 2080 217 26 13 chr1 235796876 235797411 -46396253 + L1MCa LINE L1 1 542 -5884 229 260 41 0 chr1 235797442 235797515 -46396149 + L1MCa LINE L1 2088 2163 -4263 * 592 227 74 46 chr1 235797514 235798055 -46395609 + L1MCa LINE L1 2116 2684 -3742 668 193 80 0 chr1 235798086 235798273 -46395391 + L1M4 LINE L1 4487 4688 -1458 751 194 32 11 chr1 235798274 235798460 -46395204 + L1MC2 LINE L1 6149 6338 -6 282 108 40 0 chr1 235798501 235798575 -46395089 + (TA)n Simple_repeat Simple_repeat 1 77 0 21 57 0 0 chr1 235798701 235798736 -46394928 + AT_rich Low_complexity Low_complexity 1 35 0 1486 155 174 35 chr1 235798869 235799243 -46394421 - MSTB LTR MaLR 0 426 1 1409 258 7 44 chr1 235799920 235800045 -46393619 + L1MC2 LINE L1 10 138 -6288 1710 152 58 36 chr1 235800045 235800375 -46393289 - MER1B DNA MER1_type 0 337 1 1409 258 7 44 chr1 235800375 235800656 -46393008 + L1MC2 LINE L1 138 401 -6025 600 50 0 0 chr1 235800656 235800736 -46392928 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 899 452 26 4 chr1 235800736 235801008 -46392656 - AluSc SINE Alu -31 278 1 3221 75 9 6 chr1 235801009 235801617 -46392047 - L1P3 LINE L1 -465 5689 5078 357 233 34 51 chr1 235801639 235801815 -46391849 + L1MC2 LINE L1 3150 3322 -3104 5240 216 87 25 chr1 235801817 235801980 -46391684 + L1MC2 LINE L1 3460 3611 -3013 2079 125 4 0 chr1 235801980 235802292 -46391372 - AluSx SINE Alu 0 313 1 5240 216 87 25 chr1 235802292 235805094 -46388570 + L1MC2 LINE L1 3611 6623 -1 363 341 77 40 chr1 235805522 235805857 -46387807 + L2 LINE L2 2778 3120 -193 875 183 137 11 chr1 235805857 235806032 -46387632 + MSTB LTR MaLR 1 197 -229 531 137 9 1 chr1 235806032 235806136 -46387528 + L1PA8A LINE L1 5380 5479 -652 22 56 0 0 chr1 235807288 235807324 -46386340 + AT_rich Low_complexity Low_complexity 1 36 0 6546 179 34 4 chr1 235807462 235808760 -46384904 + L1PA13 LINE L1 3163 4499 -1647 5038 101 65 21 chr1 235808773 235809681 -46383983 + L1PA13 LINE L1 5214 6159 -4 332 356 59 0 chr1 235810119 235810254 -46383410 + MIR3 SINE MIR 5 147 -61 2837 144 40 6 chr1 235810264 235810744 -46382920 - Tigger1 DNA MER2_type -3 2415 1920 * 4338 133 23 27 chr1 235810723 235811452 -46382212 - Tigger1 DNA MER2_type -1501 917 192 2123 125 7 0 chr1 235811720 235812025 -46381639 + AluSq SINE Alu 1 307 -6 770 203 0 97 chr1 235812026 235812199 -46381465 - Tigger1 DNA MER2_type -2219 199 50 321 26 0 0 chr1 235812199 235812237 -46381427 + (TA)n Simple_repeat Simple_repeat 2 39 0 770 203 0 97 chr1 235812237 235812280 -46381384 - Tigger1 DNA MER2_type -2368 50 4 330 316 158 27 chr1 235813851 235814180 -46379484 + HAL1 LINE L1 817 1188 -1319 387 249 35 81 chr1 235814385 235814582 -46379082 + HAL1 LINE L1 1421 1608 -899 1725 182 38 58 chr1 235814669 235815065 -46378599 + MLT1B LTR MaLR 1 388 -2 1970 151 7 0 chr1 235815531 235815829 -46377835 + AluSq SINE Alu 1 300 -13 2040 127 20 6 chr1 235816098 235816445 -46377219 - LTR56 LTR ERV1 0 445 94 1482 214 3 34 chr1 235816445 235816767 -46376897 + AluJb SINE Alu 1 312 0 556 216 10 0 chr1 235816767 235816869 -46376795 + AluJb SINE Alu 133 235 -77 431 188 20 20 chr1 235816877 235816978 -46376686 - LTR56 LTR ERV1 -344 101 1 258 362 11 6 chr1 235817053 235817230 -46376434 + L1M4 LINE L1 2384 2561 -3585 40 59 0 0 chr1 235817565 235817633 -46376031 + AT_rich Low_complexity Low_complexity 1 68 0 830 148 0 16 chr1 235819053 235819181 -46374483 - FLAM_C SINE Alu -15 128 3 542 125 0 0 chr1 235820012 235820092 -46373572 + AluJb SINE Alu 40 119 -193 30 0 0 0 chr1 235820198 235820228 -46373436 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr1 235820292 235820326 -46373338 + AT_rich Low_complexity Low_complexity 1 34 0 34 0 0 0 chr1 235820708 235820742 -46372922 + AT_rich Low_complexity Low_complexity 1 34 0 7707 17 0 2 chr1 235821015 235822362 -46371302 + L1PA3 LINE L1 4824 6168 0 22 0 0 0 chr1 235823400 235823422 -46370242 + AT_rich Low_complexity Low_complexity 1 22 0 1913 143 0 0 chr1 235824891 235825156 -46368508 - AluSx SINE Alu -45 267 3 208 151 0 57 chr1 235825782 235825853 -46367811 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 1551 175 0 0 chr1 235826096 235826370 -46367294 - L1 LINE L1 -1874 4272 3999 1511 201 17 10 chr1 235826547 235826835 -46366829 - AluJb SINE Alu -22 290 1 372 279 85 78 chr1 235826954 235827448 -46366216 - L1M4 LINE L1 -653 5521 5015 1320 200 3 40 chr1 235827457 235827661 -46366003 - MLT1B LTR MaLR -4 386 195 1608 159 125 6 chr1 235827661 235827981 -46365683 - MER46B DNA MER2_type -3 233 1 1320 200 3 40 chr1 235827981 235828076 -46365588 - MLT1B LTR MaLR -195 195 98 2260 79 0 4 chr1 235828079 235828359 -46365305 + AluY SINE Alu 1 279 -32 459 45 0 0 chr1 235828359 235828425 -46365239 + AluY SINE Alu 240 305 -4 545 232 7 53 chr1 235828462 235828613 -46365051 - MLT1B LTR MaLR -246 144 1 28 0 0 0 chr1 235828780 235828808 -46364856 + AT_rich Low_complexity Low_complexity 1 28 0 2102 130 0 3 chr1 235828808 235829101 -46364563 - AluSx SINE Alu -20 292 1 29 0 0 0 chr1 235829942 235829971 -46363693 + AT_rich Low_complexity Low_complexity 1 29 0 525 259 35 24 chr1 235829996 235830166 -46363498 + MER5B DNA MER1_type 3 174 -4 457 247 78 66 chr1 235830530 235830773 -46362891 - Charlie2 DNA MER1_type -634 2228 1983 1485 223 29 18 chr1 235830783 235831169 -46362495 - L1MA10 LINE L1 -2 6332 5943 22 88 0 0 chr1 235831465 235831522 -46362142 + AT_rich Low_complexity Low_complexity 1 57 0 368 330 64 12 chr1 235831754 235831927 -46361737 - MIR SINE MIR -15 247 66 2458 56 0 0 chr1 235831976 235832263 -46361401 + AluY SINE Alu 1 287 -24 576 362 98 0 chr1 235833220 235833466 -46360198 + MER115 DNA AcHobo 57 326 -367 281 26 0 26 chr1 235834300 235834339 -46359325 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2417 204 18 63 chr1 235834358 235834960 -46358704 - LTR9 LTR ERV1 0 612 38 313 289 56 38 chr1 235836272 235836470 -46357194 + MIR SINE MIR 15 255 -7 576 244 154 56 chr1 235836510 235836834 -46356830 - MLT1J2 LTR MaLR -23 427 72 197 189 151 19 chr1 235837985 235838038 -46355626 + MER5A DNA MER1_type 120 179 -10 562 185 36 14 chr1 235839165 235839317 -46354347 + L1 LINE L1 4101 4255 -1891 6316 221 32 19 chr1 235839572 235840924 -46352740 - L1P LINE L1 -3087 3059 1682 2025 158 0 0 chr1 235840924 235841222 -46352442 + AluSx SINE Alu 1 298 -14 6316 221 32 19 chr1 235841222 235841479 -46352185 - L1P LINE L1 -4464 1682 1430 1865 173 33 76 chr1 235841655 235841917 -46351747 - L1MB7 LINE L1 -145 6039 5767 2190 103 3 29 chr1 235841917 235842227 -46351437 - AluSq SINE Alu -11 302 1 1865 173 33 76 chr1 235842227 235842238 -46351426 - L1MB7 LINE L1 -417 5767 5757 603 204 0 29 chr1 235842238 235842375 -46351289 - FLAM_A SINE Alu 0 133 1 1865 173 33 76 chr1 235842375 235842558 -46351106 - L1MB7 LINE L1 -427 5757 5602 330 298 21 0 chr1 235844167 235844261 -46349403 - L1MC4 LINE L1 -1334 6708 6613 345 283 0 0 chr1 235844264 235844356 -46349308 + L1MC4 LINE L1 6614 6705 -1337 369 153 0 0 chr1 235844358 235844430 -46349234 + (TA)n Simple_repeat Simple_repeat 2 73 0 710 253 106 8 chr1 235844432 235844669 -46348995 + HAL1 LINE L1 1487 1746 -761 208 206 0 0 chr1 235844671 235844705 -46348959 + polypurine Low_complexity Low_complexity 2 35 0 348 209 134 0 chr1 235844867 235844969 -46348695 + FLAM_A SINE Alu 1 122 -11 362 256 22 7 chr1 235845012 235845149 -46348515 + HAL1 LINE L1 2031 2169 -338 1914 143 0 54 chr1 235845247 235845561 -46348103 + AluSx SINE Alu 2 298 -14 1512 140 120 4 chr1 235845870 235846120 -46347544 - AluSx SINE Alu -29 283 5 822 239 59 13 chr1 235846122 235846360 -46347304 + HAL1 LINE L1 2254 2502 -5 443 315 27 13 chr1 235846497 235846646 -46347018 + L3 LINE CR1 145 295 -1282 21 0 0 0 chr1 235846652 235846673 -46346991 + AT_rich Low_complexity Low_complexity 1 21 0 3026 122 70 35 chr1 235846766 235847341 -46346323 + L1MB7 LINE L1 5590 6184 0 2196 129 134 8 chr1 235847359 235847739 -46345925 - MSTA LTR MaLR 0 428 1 413 232 261 7 chr1 235848186 235848324 -46345340 - MER5B DNA MER1_type 0 178 6 330 395 56 14 chr1 235848437 235848723 -46344941 - L2 LINE L2 -16 3256 2959 249 262 87 76 chr1 235848726 235848898 -46344766 + L3 LINE CR1 637 810 -767 306 370 27 14 chr1 235848975 235849121 -46344543 - MIR3 SINE MIR -45 163 16 281 220 11 99 chr1 235849128 235849219 -46344445 + L3 LINE CR1 818 900 -677 862 250 45 0 chr1 235849306 235849482 -46344182 + MIR SINE MIR 20 203 -59 11498 164 24 40 chr1 235849483 235849562 -46344102 + L1MA5 LINE L1 2701 2780 -3520 2290 114 3 0 chr1 235849562 235849861 -46343803 + AluSx SINE Alu 1 300 -12 765 144 45 38 chr1 235849864 235849996 -46343668 + FLAM_C SINE Alu 1 133 0 11498 164 24 40 chr1 235849996 235850515 -46343149 + L1MA5 LINE L1 2782 3308 -2992 1032 200 0 0 chr1 235850515 235850685 -46342979 + FAM SINE Alu 1 170 -5 11498 164 24 40 chr1 235850685 235850879 -46342785 + L1MA5 LINE L1 3308 3504 -2796 285 154 39 0 chr1 235850879 235850931 -46342733 + Alu SINE Alu 235 288 -14 11498 164 24 40 chr1 235850931 235851674 -46341990 + L1MA5 LINE L1 3504 4257 -2043 324 0 0 0 chr1 235851674 235851710 -46341954 + (CA)n Simple_repeat Simple_repeat 1 36 0 11498 164 24 40 chr1 235851710 235853717 -46339947 + L1MA5 LINE L1 4257 6250 -50 282 137 20 0 chr1 235853750 235853801 -46339863 + L1MA6 LINE L1 6249 6300 0 * 1658 246 100 13 chr1 235853797 235854063 -46339601 + L1ME3 LINE L1 5191 5433 -729 207 0 0 0 chr1 235854063 235854086 -46339578 + (GGGGA)n Simple_repeat Simple_repeat 5 27 0 1658 246 100 13 chr1 235854086 235854431 -46339233 + L1ME3 LINE L1 5433 5851 -311 656 177 41 5 chr1 235854456 235854596 -46339068 + L1ME3 LINE L1 6031 6333 -1 614 306 64 19 chr1 235854630 235854941 -46338723 + L3 LINE CR1 989 1313 -264 959 154 20 56 chr1 235854942 235855005 -46338659 - MER5A DNA MER1_type -1 188 124 2271 110 0 0 chr1 235855005 235855306 -46338358 + AluSx SINE Alu 2 302 -10 959 154 20 56 chr1 235855306 235855437 -46338227 - MER5A DNA MER1_type -65 124 1 220 233 242 33 chr1 235855481 235855601 -46338063 - MIR SINE MIR 0 262 118 255 274 7 118 chr1 235855644 235855745 -46337919 + L3 LINE CR1 1437 1522 -55 2295 82 3 0 chr1 235855745 235856168 -46337496 - AluSp SINE Alu 0 424 1 255 274 7 118 chr1 235856168 235856200 -46337464 + L3 LINE CR1 1522 1556 -21 1800 142 76 0 chr1 235857143 235857461 -46336203 + AluSg SINE Alu 1 310 0 2461 74 0 7 chr1 235857461 235857760 -46335904 + AluY SINE Alu 1 297 -14 232 305 16 94 chr1 235858313 235858441 -46335223 - L2 LINE L2 -4 3268 3151 277 247 118 24 chr1 235858676 235858761 -46334903 + L2 LINE L2 2999 3091 -181 1836 118 35 0 chr1 235858797 235859084 -46334580 - MER2 DNA MER2_type 0 345 49 372 78 16 31 chr1 235859085 235859149 -46334515 + U2 snRNA snRNA 1 63 -125 258 145 0 130 chr1 235859135 235859204 -46334460 - MER2 DNA MER2_type -285 60 1 * 611 192 23 0 chr1 235859355 235859485 -46334179 - L1ME3 LINE L1 -2 6160 6028 481 294 173 35 chr1 235859492 235859920 -46333744 + L3 LINE CR1 1087 1573 -4 370 317 65 38 chr1 235861332 235861518 -46332146 - L2 LINE L2 -186 3127 2937 215 307 0 13 chr1 235861520 235861595 -46332069 - L2 LINE L2 -10 3262 3189 302 177 281 10 chr1 235862673 235862769 -46330895 + MIR SINE MIR 26 147 -61 543 196 30 45 chr1 235863162 235863295 -46330369 - MIR SINE MIR -110 152 22 203 256 0 0 chr1 235864448 235864491 -46329173 + (CA)n Simple_repeat Simple_repeat 1 43 0 352 303 226 0 chr1 235864506 235864661 -46329003 + MIR SINE MIR 2 191 -71 236 218 36 0 chr1 235866931 235866986 -46326678 + CT-rich Low_complexity Low_complexity 1 57 0 276 345 0 0 chr1 235869974 235870087 -46323577 + L3b LINE CR1 1323 1435 -148 252 268 127 51 chr1 235870304 235870461 -46323203 + MIR3 SINE MIR 14 182 -26 2332 108 0 7 chr1 235871276 235871581 -46322083 - AluSq SINE Alu -10 303 1 186 43 0 0 chr1 235871606 235871629 -46322035 + (A)n Simple_repeat Simple_repeat 1 23 0 261 255 35 43 chr1 235871651 235871786 -46321878 + MIR SINE MIR 15 151 -57 264 164 180 0 chr1 235872678 235872739 -46320925 + MIR3 SINE MIR 84 155 -53 185 195 24 0 chr1 235873446 235873487 -46320177 + MIR SINE MIR 78 119 -89 2107 135 0 10 chr1 235873757 235874054 -46319610 - AluSg SINE Alu -15 295 2 415 240 48 32 chr1 235874220 235874345 -46319319 - L3 LINE CR1 -39 1538 1412 283 286 20 39 chr1 235875107 235875263 -46318401 + MER5A DNA MER1_type 33 178 0 368 266 54 114 chr1 235875273 235875333 -46318331 - MER5B DNA MER1_type -1 188 126 2381 103 0 0 chr1 235875333 235875643 -46318021 + AluSg SINE Alu 1 310 0 368 266 54 114 chr1 235875643 235875766 -46317898 - MER5B DNA MER1_type -63 126 3 370 266 121 35 chr1 235876414 235876613 -46317051 - L2 LINE L2 -369 2945 2730 777 174 15 8 chr1 235876761 235876893 -46316771 - AluJo SINE Alu -178 134 2 638 316 166 15 chr1 235876906 235877448 -46316216 - L2 LINE L2 -609 2705 2082 365 373 33 0 chr1 235878050 235878203 -46315461 - MIR SINE MIR -82 180 23 1981 142 10 10 chr1 235878499 235878810 -46314854 + AluJb SINE Alu 1 311 -1 1566 42 0 0 chr1 235879683 235879873 -46313791 - L1PA4 LINE L1 -3 6152 5963 23 0 0 0 chr1 235880405 235880428 -46313236 + AT_rich Low_complexity Low_complexity 1 23 0 2344 46 60 3 chr1 235880486 235880771 -46312893 + AluY SINE Alu 1 301 -10 2281 100 28 0 chr1 235881672 235881963 -46311701 + AluSx SINE Alu 1 299 -13 314 276 260 8 chr1 235882176 235882303 -46311361 - MER5B DNA MER1_type -16 162 4 610 162 0 0 chr1 235882339 235882438 -46311226 + U6 snRNA snRNA 1 99 -8 256 273 71 64 chr1 235882499 235882781 -46310883 + L2 LINE L2 2828 3111 -161 595 213 89 67 chr1 235882857 235883082 -46310582 + MIR SINE MIR 16 245 -17 389 333 75 52 chr1 235883432 235883699 -46309965 - L2 LINE L2 -5 3267 2995 819 95 9 0 chr1 235883699 235883804 -46309860 + AluSg/x SINE Alu 82 187 -123 497 43 0 0 chr1 235883804 235883873 -46309791 + AluY SINE Alu 242 310 0 730 255 57 27 chr1 235884102 235884337 -46309327 - MIR SINE MIR -18 244 1 1707 157 21 7 chr1 235884767 235885047 -46308617 + AluSx SINE Alu 14 297 -15 207 204 23 0 chr1 235885900 235885944 -46307720 + MIR SINE MIR 60 104 -158 2058 52 52 0 chr1 235885981 235886312 -46307352 - AluY SINE Alu 0 364 21 1881 144 44 26 chr1 235886654 235886956 -46306708 + MLT1A1 LTR MaLR 19 329 -36 2419 68 0 23 chr1 235886956 235887263 -46306401 - AluY SINE Alu -11 300 1 1881 144 44 26 chr1 235887263 235887301 -46306363 + MLT1A1 LTR MaLR 329 365 0 236 263 13 53 chr1 235887304 235887380 -46306284 - MIR3 SINE MIR -52 156 84 334 195 50 11 chr1 235887424 235887516 -46306148 + L1MD3 LINE L1 7693 7983 -3 190 364 8 68 chr1 235887586 235887718 -46305946 - L2 LINE L2 -20 3252 3129 852 144 0 0 chr1 235887762 235887894 -46305770 - FLAM_C SINE Alu -1 132 1 2216 103 3 10 chr1 235888179 235888479 -46305185 + AluSx SINE Alu 1 298 -14 188 324 82 34 chr1 235888904 235889111 -46304553 + L2 LINE L2 2819 3035 -237 402 296 115 88 chr1 235889226 235889444 -46304220 - L2 LINE L2 -17 3255 3027 2083 124 0 26 chr1 235889444 235889751 -46303913 - AluSx SINE Alu -13 299 1 402 296 115 88 chr1 235889751 235889792 -46303872 - L2 LINE L2 -245 3027 2989 249 248 116 41 chr1 235889799 235889920 -46303744 + L2 LINE L2 3184 3313 0 25 83 0 0 chr1 235890173 235890233 -46303431 + AT_rich Low_complexity Low_complexity 1 60 0 2225 133 0 3 chr1 235890251 235890560 -46303104 - AluSx SINE Alu -4 308 1 1298 129 0 0 chr1 235890673 235890844 -46302820 + AluSq SINE Alu 121 291 -22 1439 192 132 79 chr1 235891031 235891525 -46302139 + MLT2B1 LTR ERVL 1 520 0 305 185 222 0 chr1 235891604 235891685 -46301979 - MIR3 SINE MIR -1 207 109 288 289 58 10 chr1 235891877 235891981 -46301683 - L2 LINE L2 -64 3208 3100 212 184 51 133 chr1 235892305 235892403 -46301261 - MIR SINE MIR -58 150 61 571 280 236 19 chr1 235892575 235892939 -46300725 + L3 LINE CR1 1129 1571 -6 2175 114 7 0 chr1 235893271 235893561 -46300103 + AluSx SINE Alu 1 292 -20 769 142 8 0 chr1 235893611 235893745 -46299919 + L1MB3 LINE L1 5822 5956 -227 2054 156 7 0 chr1 235893793 235894101 -46299563 - AluJb SINE Alu -2 310 1 308 279 0 0 chr1 235894113 235894181 -46299483 + L2 LINE L2 3201 3268 -4 294 293 106 32 chr1 235894294 235894417 -46299247 - L2 LINE L2 -2 3270 3139 * 456 317 104 79 chr1 235894408 235894795 -46298869 - L2 LINE L2 -341 2973 2597 2014 134 3 29 chr1 235894795 235895101 -46298563 + AluSq SINE Alu 1 298 -15 456 317 104 79 chr1 235895101 235896096 -46297568 - L2 LINE L2 -717 2597 1556 187 261 68 23 chr1 235896115 235896203 -46297461 + L2 LINE L2 2907 2998 -274 * 432 317 82 66 chr1 235896175 235896478 -46297186 - L2 LINE L2 -9 3263 2956 229 350 87 29 chr1 235896643 235896746 -46296918 + L2 LINE L2 3154 3262 -10 2287 101 0 0 chr1 235897718 235898014 -46295650 + AluSx SINE Alu 11 306 -6 1001 237 125 30 chr1 235898327 235898824 -46294840 - L1MC5 LINE L1 -48 7913 7370 810 170 0 7 chr1 235898826 235898961 -46294703 + AluJb SINE Alu 1 134 -178 259 174 52 130 chr1 235898967 235899033 -46294631 - L1MC5 LINE L1 -588 7373 7317 1825 108 7 14 chr1 235899033 235899375 -46294289 - AluSx SINE Alu 0 340 1 259 174 52 130 chr1 235899375 235899422 -46294242 - L1MC5 LINE L1 -644 7317 7268 967 155 102 0 chr1 235899522 235899709 -46293955 - AluJo SINE Alu -22 290 85 1454 209 78 83 chr1 235899742 235900355 -46293309 - L1MC5 LINE L1 -738 7223 6614 309 271 52 10 chr1 235901001 235901097 -46292567 + MIR3 SINE MIR 5 104 -104 254 260 173 16 chr1 235901644 235901771 -46291893 + L3b LINE CR1 1344 1490 -93 1886 139 0 4 chr1 235902060 235902340 -46291324 + AluJb SINE Alu 1 279 -33 251 306 161 20 chr1 235902499 235902698 -46290966 - MLT1L LTR MaLR -6 609 383 423 0 0 0 chr1 235903226 235903273 -46290391 + (CA)n Simple_repeat Simple_repeat 2 48 0 2227 92 3 0 chr1 235904161 235904464 -46289200 + AluSp SINE Alu 1 304 -9 1131 119 0 0 chr1 235904470 235904646 -46289018 + (GGAGAA)n Simple_repeat Simple_repeat 3 178 0 362 287 14 50 chr1 235904659 235904838 -46288826 + MIR SINE MIR 42 212 -50 268 299 75 0 chr1 235905260 235905367 -46288297 - MIR SINE MIR -64 198 84 895 109 0 36 chr1 235905485 235905622 -46288042 + FLAM_C SINE Alu 2 133 0 1704 170 19 13 chr1 235905780 235906092 -46287572 - MER58B DNA MER1_type -3 338 25 2118 109 0 13 chr1 235906429 235906732 -46286932 + AluSx SINE Alu 10 308 -4 211 309 12 12 chr1 235906932 235907013 -46286651 + MIR SINE MIR 24 104 -104 1957 108 0 4 chr1 235907086 235907363 -46286301 + AluSx SINE Alu 1 276 -36 1199 134 139 0 chr1 235907410 235907612 -46286052 + MER30 DNA MER1_type 1 230 0 1513 184 0 38 chr1 235907938 235908254 -46285410 + AluJb SINE Alu 1 304 -8 943 265 13 13 chr1 235908287 235908535 -46285129 + MIR SINE MIR 20 260 -2 339 25 0 0 chr1 235908840 235908880 -46284784 + (TG)n Simple_repeat Simple_repeat 1 40 0 339 267 162 9 chr1 235908950 235909055 -46284609 + MIR3 SINE MIR 8 128 -80 726 184 16 92 chr1 235909976 235910161 -46283503 - MER45A DNA AcHobo -7 171 1 248 268 122 70 chr1 235910166 235910230 -46283434 - MIR SINE MIR -6 256 197 1839 151 0 0 chr1 235910230 235910514 -46283150 - AluJb SINE Alu -20 292 9 248 268 122 70 chr1 235910514 235910697 -46282967 - MIR SINE MIR -65 197 3 491 225 141 31 chr1 235910861 235911052 -46282612 + MIR SINE MIR 37 248 -14 969 208 0 33 chr1 235913812 235913991 -46279673 - AluJ SINE Alu 0 312 140 1945 129 7 0 chr1 235913991 235914286 -46279378 - AluSx SINE Alu -15 297 1 969 208 0 33 chr1 235914286 235914318 -46279346 - AluJ SINE Alu -172 140 108 750 131 0 0 chr1 235914359 235914466 -46279198 - AluJ SINE Alu -204 108 2 614 285 39 0 chr1 235915535 235915714 -46277950 - MIR SINE MIR 0 262 77 573 15 0 0 chr1 235915765 235915831 -46277833 + (TC)n Simple_repeat Simple_repeat 1 66 0 1781 146 0 4 chr1 235915831 235916112 -46277552 - AluSx SINE Alu -32 280 1 209 220 0 20 chr1 235916369 235916419 -46277245 + GA-rich Low_complexity Low_complexity 2 50 0 1877 123 0 0 chr1 235916464 235916724 -46276940 + AluSx SINE Alu 15 274 -38 197 297 41 28 chr1 235917087 235917232 -46276432 + L2 LINE L2 1755 1901 -1413 323 190 35 0 chr1 235917262 235917320 -46276344 + MER81 DNA DNA 55 114 0 1951 106 15 4 chr1 235917514 235917787 -46275877 - MER1A DNA MER1_type 0 529 254 1350 130 106 5 chr1 235917889 235918097 -46275567 - MER1A DNA MER1_type -298 229 1 384 325 85 66 chr1 235918110 235918535 -46275129 - L2 LINE L2 -25 3247 2815 234 0 0 0 chr1 235919497 235919523 -46274141 + (TG)n Simple_repeat Simple_repeat 2 27 0 203 266 62 0 chr1 235919684 235919748 -46273916 + (CATG)n Simple_repeat Simple_repeat 3 70 0 287 260 73 57 chr1 235920181 235920304 -46273360 - MIR SINE MIR -41 221 97 481 202 113 0 chr1 235921010 235921134 -46272530 - MIR SINE MIR -56 206 69 600 289 85 37 chr1 235921670 235921916 -46271748 + L2 LINE L2 3015 3272 0 392 312 110 32 chr1 235921922 235922140 -46271524 - MIR SINE MIR 0 262 28 301 318 48 40 chr1 235922587 235922713 -46270951 + L2 LINE L2 3136 3262 -10 23 0 0 0 chr1 235923080 235923103 -46270561 + AT_rich Low_complexity Low_complexity 1 23 0 245 140 19 48 chr1 235923106 235923185 -46270479 - MER63 DNA MER1_type -362 700 1 2161 69 0 4 chr1 235924612 235924886 -46268778 + AluSc SINE Alu 37 309 0 194 150 25 0 chr1 235925742 235925782 -46267882 + A-rich Low_complexity Low_complexity 5 45 0 2130 110 3 0 chr1 235927085 235927376 -46266288 + AluSp SINE Alu 1 292 -21 945 165 0 28 chr1 235927548 235927724 -46265940 - AluJo SINE Alu -125 187 17 1968 133 3 3 chr1 235927951 235928251 -46265413 + AluSx SINE Alu 1 300 -12 606 70 0 0 chr1 235928692 235928778 -46264886 - L1PB2 LINE L1 -2 6149 6064 2206 100 0 0 chr1 235930324 235930633 -46263031 + AluSc SINE Alu 1 309 0 413 127 0 0 chr1 235930928 235930991 -46262673 - Alu SINE Alu -11 300 238 2204 89 7 17 chr1 235931105 235931407 -46262257 - AluSx SINE Alu -13 299 1 914 269 70 0 chr1 235931717 235931944 -46261720 - MIR SINE MIR -2 260 18 1172 184 14 5 chr1 235932445 235932662 -46261002 - MER20 DNA MER1_type 0 219 1 582 191 155 19 chr1 235932927 235933174 -46260490 + L1MB8 LINE L1 5126 5401 -745 2336 87 0 0 chr1 235933468 235933768 -46259896 - AluSg SINE Alu -10 300 1 3564 142 84 45 chr1 235934367 235935019 -46258645 + L1MB8 LINE L1 5386 6074 -104 2388 73 0 0 chr1 235935019 235935322 -46258342 + AluY SINE Alu 1 303 -8 3564 142 84 45 chr1 235935322 235935431 -46258233 + L1MB8 LINE L1 6074 6177 -1 212 301 71 53 chr1 235935677 235935790 -46257874 - MIR SINE MIR -74 134 20 2304 74 10 3 chr1 235936683 235936992 -46256672 + AluY SINE Alu 1 311 0 1908 135 30 0 chr1 235937236 235937533 -46256131 + AluSx SINE Alu 1 306 -6 1324 148 99 4 chr1 235937584 235937827 -46255837 + AluJb SINE Alu 17 282 -30 209 56 0 28 chr1 235937832 235937868 -46255796 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 25 0 0 0 chr1 235939418 235939443 -46254221 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr1 235942236 235942263 -46251401 + (CA)n Simple_repeat Simple_repeat 2 28 0 268 337 22 0 chr1 235943769 235943858 -46249806 + Charlie7 DNA MER1_type 1 91 -2521 747 174 8 0 chr1 235944655 235944776 -46248888 + FLAM_A SINE Alu 1 122 -11 29 78 0 0 chr1 235945181 235945245 -46248419 + GC_rich Low_complexity Low_complexity 1 64 0 385 314 106 14 chr1 235945890 235946097 -46247567 + MIR SINE MIR 24 249 -13 727 233 93 6 chr1 235946275 235946447 -46247217 + MIR SINE MIR 69 255 -7 2272 73 0 10 chr1 235947407 235947708 -46245956 - AluSp SINE Alu -15 298 1 2224 113 0 3 chr1 235947757 235948068 -46245596 - AluSg SINE Alu 0 310 1 213 293 53 80 chr1 235948414 235948564 -46245100 + MIR3 SINE MIR 4 149 -59 2177 105 3 10 chr1 235948617 235948923 -46244741 + AluSq SINE Alu 1 304 -9 315 306 50 38 chr1 235949885 235950045 -46243619 - MIR SINE MIR -72 190 29 255 341 114 15 chr1 235950132 235950264 -46243400 + L1MC5 LINE L1 7742 7886 -75 2135 150 117 10 chr1 235952560 235952953 -46240711 - MER63B DNA MER1_type -1 435 1 2265 98 0 3 chr1 235953096 235953403 -46240261 - AluSc SINE Alu -3 306 1 629 290 60 24 chr1 235953819 235954071 -46239593 + MIR SINE MIR 2 262 0 216 0 0 0 chr1 235954613 235954637 -46239027 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2333 276 87 63 chr1 235954920 235955237 -46238427 - L2 LINE L2 -1 3312 3004 2196 114 0 22 chr1 235955237 235955552 -46238112 + AluSx SINE Alu 1 308 -4 2333 276 87 63 chr1 235955552 235956108 -46237556 - L2 LINE L2 -309 3004 2463 2268 99 0 0 chr1 235956108 235956412 -46237252 + AluSq SINE Alu 1 304 -9 2333 276 87 63 chr1 235956412 235956948 -46236716 - L2 LINE L2 -850 2463 1863 347 270 0 0 chr1 235956966 235957050 -46236614 + AluJ/FLAM SINE Alu 9 83 -219 1783 155 0 29 chr1 235959458 235959635 -46234029 - AluJo SINE Alu -5 307 126 193 29 29 29 chr1 235959635 235959670 -46233994 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2040 115 3 3 chr1 235959670 235959958 -46233706 - AluSx SINE Alu -24 288 1 1783 155 0 29 chr1 235959958 235960095 -46233569 - AluJo SINE Alu -184 128 1 1653 188 3 0 chr1 235960669 235960956 -46232708 - AluJb SINE Alu -24 288 1 1234 94 0 0 chr1 235961123 235961282 -46232382 - AluSq SINE Alu -154 159 1 224 246 33 0 chr1 235962890 235962951 -46230713 + L2 LINE L2 3194 3256 -16 415 259 110 20 chr1 235962966 235963131 -46230533 - MIR SINE MIR -40 222 43 457 320 74 25 chr1 235963263 235963466 -46230198 + MIR SINE MIR 17 229 -33 198 303 91 30 chr1 235964591 235964690 -46228974 - MIR3 SINE MIR -94 114 10 210 143 0 0 chr1 235965866 235965901 -46227763 + (TTCTCC)n Simple_repeat Simple_repeat 6 40 0 333 297 71 28 chr1 235969760 235969942 -46223722 - MIR SINE MIR -22 240 51 507 255 59 33 chr1 235969967 235970120 -46223544 + MIR3 SINE MIR 30 186 -22 2870 158 51 47 chr1 235971489 235971592 -46222072 - MER39 LTR ERV1 0 707 606 2187 96 3 40 chr1 235971592 235971916 -46221748 + AluSx SINE Alu 1 312 0 2870 158 51 47 chr1 235971916 235972003 -46221661 - MER39 LTR ERV1 -101 606 521 1949 143 3 0 chr1 235972003 235972303 -46221361 - AluSx SINE Alu -11 301 1 2870 158 51 47 chr1 235972303 235972762 -46220902 - MER39 LTR ERV1 -186 521 1 266 326 22 0 chr1 235972871 235972960 -46220704 + MIR SINE MIR 29 119 -89 270 331 108 19 chr1 235973751 235973908 -46219756 - MIR SINE MIR -6 256 86 585 256 81 0 chr1 235974690 235974850 -46218814 - MIR SINE MIR 0 262 90 327 257 26 26 chr1 235975157 235975270 -46218394 - MIR SINE MIR -56 206 94 2262 89 0 0 chr1 235975321 235975614 -46218050 + AluSq SINE Alu 1 293 -20 342 0 0 0 chr1 235976972 235977010 -46216654 + (CA)n Simple_repeat Simple_repeat 2 39 0 297 0 0 0 chr1 235977316 235977349 -46216315 + (CCCGG)n Simple_repeat Simple_repeat 1 33 0 204 217 29 43 chr1 235977831 235977900 -46215764 + (CGGGG)n Simple_repeat Simple_repeat 2 69 0 342 246 153 8 chr1 235978596 235978714 -46214950 + MIR3 SINE MIR 49 183 -25 391 200 35 35 chr1 235979424 235979439 -46214225 - MIR SINE MIR -1 261 247 2230 67 0 0 chr1 235979439 235979747 -46213917 + AluY SINE Alu 1 308 0 391 200 35 35 chr1 235979747 235979845 -46213819 - MIR SINE MIR -14 248 147 2126 94 0 0 chr1 235979863 235980140 -46213524 + AluSg SINE Alu 1 277 -33 251 47 70 0 chr1 235980140 235980183 -46213481 + A-rich Low_complexity Low_complexity 1 46 0 761 84 19 0 chr1 235980411 235980518 -46213146 + AluY SINE Alu 194 302 -9 1009 181 27 21 chr1 235980566 235980754 -46212910 + MER5A DNA MER1_type 1 189 0 610 242 0 20 chr1 235981298 235981451 -46212213 - MIR SINE MIR -14 248 99 378 291 117 0 chr1 235981615 235981807 -46211857 + MIR SINE MIR 20 235 -27 22 0 0 0 chr1 235983048 235983070 -46210594 + AT_rich Low_complexity Low_complexity 1 22 0 440 145 0 0 chr1 235983321 235983390 -46210274 - AluSp/q SINE Alu -9 304 236 935 171 53 92 chr1 235983410 235983544 -46210120 - MER20 DNA MER1_type 0 219 95 1999 110 3 0 chr1 235983544 235983860 -46209804 - AluSg SINE Alu 0 317 1 935 171 53 92 chr1 235983860 235983952 -46209712 - MER20 DNA MER1_type -124 95 1 252 0 0 0 chr1 235985224 235985252 -46208412 + (GA)n Simple_repeat Simple_repeat 1 28 0 1853 128 13 33 chr1 235985739 235986088 -46207576 - AluSx SINE Alu 0 312 1 3261 183 33 31 chr1 235986095 235986617 -46207047 - L1MD2 LINE L1 0 6359 5834 1924 148 7 0 chr1 235986617 235986920 -46206744 + AluSx SINE Alu 1 305 -7 3261 183 33 31 chr1 235986920 235987096 -46206568 - L1MD2 LINE L1 -525 5834 5660 233 269 45 0 chr1 235987102 235987169 -46206495 + L2 LINE L2 3201 3270 -2 618 291 103 0 chr1 235987467 235987690 -46205974 + MIR SINE MIR 11 256 -6 1152 129 12 0 chr1 235987736 235987906 -46205758 + FRAM SINE Alu 1 168 -8 2251 105 3 0 chr1 235987906 235988212 -46205452 + AluSx SINE Alu 1 307 -5 962 76 0 0 chr1 235989325 235989444 -46204220 + FRAM SINE Alu 46 164 -12 1995 121 0 29 chr1 235989574 235989880 -46203784 + AluSx SINE Alu 1 297 -15 2110 111 13 3 chr1 235989894 235990201 -46203463 + AluSg SINE Alu 1 310 0 847 178 0 6 chr1 235990213 235990370 -46203294 + AluJb SINE Alu 135 290 -22 189 329 53 0 chr1 235990371 235990447 -46203217 + L2 LINE L2 2695 2774 -540 2115 86 3 51 chr1 235990507 235990820 -46202844 - AluSg SINE Alu -12 298 1 522 299 58 6 chr1 235990938 235991112 -46202552 + MIR SINE MIR 37 219 -43 1967 102 43 33 chr1 235991327 235991632 -46202032 - AluSc SINE Alu -1 308 1 1446 167 44 0 chr1 235991633 235991903 -46201761 + MER58B DNA MER1_type 41 322 -19 267 280 153 34 chr1 235993036 235993154 -46200510 + MIR SINE MIR 81 212 -50 1126 162 129 33 chr1 235993226 235993467 -46200197 - AluJo SINE Alu -48 264 1 211 277 99 20 chr1 235993818 235993919 -46199745 + MIR SINE MIR 35 143 -65 540 265 41 9 chr1 235994200 235994384 -46199280 - MIR SINE MIR -65 143 1 184 273 0 23 chr1 235994470 235994514 -46199150 + L2 LINE L2 3202 3244 -28 210 191 0 0 chr1 235994595 235994637 -46199027 - MER91 DNA MER1_type -98 42 1 219 88 0 0 chr1 235994648 235994682 -46198982 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2346 83 0 0 chr1 235994787 235995088 -46198576 + AluSg SINE Alu 1 301 -9 2157 95 7 20 chr1 235995313 235995619 -46198045 - AluSx SINE Alu -10 302 1 355 289 113 7 chr1 235996754 235996896 -46196768 + MIR SINE MIR 63 219 -43 234 280 43 54 chr1 235997083 235997176 -46196488 + L2 LINE L2 3111 3202 -70 1465 162 44 54 chr1 235997235 235997550 -46196114 + AluJo SINE Alu 1 312 0 221 370 74 0 chr1 235998218 235998326 -46195338 - L3 LINE CR1 -7 1570 1455 850 148 0 15 chr1 235998949 235999084 -46194580 + FLAM_C SINE Alu 1 133 0 2610 58 0 0 chr1 235999089 235999397 -46194267 + AluY SINE Alu 1 308 -3 2156 111 3 0 chr1 235999830 236000119 -46193545 + AluSg SINE Alu 1 290 -20 2247 87 3 3 chr1 236000127 236000438 -46193226 + AluSp SINE Alu 1 311 0 656 160 10 130 chr1 236000503 236000642 -46193022 - L1MD3 LINE L1 -10 7985 7831 2158 109 20 10 chr1 236000642 236000946 -46192718 + AluSx SINE Alu 1 307 -5 656 160 10 130 chr1 236000946 236000957 -46192707 - L1MD3 LINE L1 -164 7831 7861 1516 154 89 46 chr1 236000957 236001237 -46192427 + AluJb SINE Alu 1 292 -20 656 160 10 130 chr1 236001237 236001285 -46192379 - L1MD3 LINE L1 -133 7862 7810 584 221 67 98 chr1 236001411 236001727 -46191937 + HAL1 LINE L1 817 1122 -1385 2032 127 10 20 chr1 236001884 236002184 -46191480 + AluSx SINE Alu 3 299 -13 2432 95 0 0 chr1 236002925 236003230 -46190434 - AluSx SINE Alu -7 305 1 732 219 41 12 chr1 236003234 236003403 -46190261 - MIR SINE MIR -64 198 25 206 234 78 0 chr1 236005034 236005098 -46188566 + L2 LINE L2 2744 2812 -502 181 263 0 0 chr1 236005101 236005139 -46188525 + MER5B DNA MER1_type 2 39 -139 196 269 30 30 chr1 236005139 236005206 -46188458 - MER5B DNA MER1_type -92 86 20 570 271 166 42 chr1 236005231 236005369 -46188295 + L2 LINE L2 2842 2961 -352 1963 147 23 0 chr1 236005369 236005669 -46187995 - AluJo SINE Alu -5 307 1 570 271 166 42 chr1 236005669 236005940 -46187724 + L2 LINE L2 2961 3302 -11 1886 114 53 11 chr1 236007375 236007656 -46186008 - AluSx SINE Alu -19 293 1 1905 152 0 7 chr1 236007836 236008138 -46185526 - AluJb SINE Alu -12 300 1 740 244 12 17 chr1 236008476 236008648 -46185016 + L1ME4a LINE L1 5559 5729 -2079 1660 144 12 4 chr1 236008656 236008906 -46184758 - AluJb SINE Alu -60 252 1 867 137 118 146 chr1 236008907 236009228 -46184436 + MER4C LTR ERV1 154 465 0 250 201 75 75 chr1 236009232 236009366 -46184298 + L1ME4a LINE L1 5987 6120 -1 2284 105 3 0 chr1 236010437 236010743 -46182921 - AluSx SINE Alu -5 307 1 2257 102 10 3 chr1 236010749 236011042 -46182622 - AluSx SINE Alu -12 300 6 1875 171 0 0 chr1 236011076 236011381 -46182283 + AluJo SINE Alu 1 305 -7 699 175 50 25 chr1 236011752 236011912 -46181752 - MIR SINE MIR -97 165 2 316 286 105 0 chr1 236012184 236012317 -46181347 - MIR SINE MIR -70 192 46 484 298 7 20 chr1 236012481 236012632 -46181032 - MER5A DNA MER1_type -6 183 35 1037 135 6 13 chr1 236013000 236013156 -46180508 + AluSq SINE Alu 5 159 -154 716 142 8 22 chr1 236013156 236013290 -46180374 + SVA Other Other 511 642 -744 1183 122 0 0 chr1 236013410 236013566 -46180098 + AluSg/x SINE Alu 127 282 -28 290 286 73 45 chr1 236013595 236013773 -46179891 + MER5A DNA MER1_type 1 183 -6 466 186 42 34 chr1 236013783 236013901 -46179763 + MIR SINE MIR 23 141 -67 2360 112 3 0 chr1 236015183 236015495 -46178169 + AluSq SINE Alu 1 313 0 21 0 0 0 chr1 236015498 236015519 -46178145 + AT_rich Low_complexity Low_complexity 1 21 0 298 148 180 0 chr1 236015677 236015738 -46177926 + AluJ/FLAM SINE Alu 2 73 -229 1734 119 4 8 chr1 236015811 236016063 -46177601 + AluSx SINE Alu 46 296 -16 216 360 81 12 chr1 236017234 236017320 -46176344 + L2 LINE L2 3134 3225 -47 1813 164 10 0 chr1 236017337 236017630 -46176034 - AluJo SINE Alu -14 298 3 2343 100 7 0 chr1 236017640 236017940 -46175724 - AluSx SINE Alu -10 302 1 216 360 81 12 chr1 236018959 236019045 -46174619 + L2 LINE L2 3134 3225 -47 1813 164 10 0 chr1 236019062 236019355 -46174309 - AluJo SINE Alu -14 298 3 2211 92 10 20 chr1 236019365 236019668 -46173996 - AluSg SINE Alu -10 300 1 1508 188 9 32 chr1 236019864 236020205 -46173459 + L1MB3 LINE L1 5841 6173 -10 30 27 0 0 chr1 236020207 236020244 -46173420 + AT_rich Low_complexity Low_complexity 1 37 0 533 305 121 61 chr1 236020387 236020876 -46172788 + MLT1H1 LTR MaLR 38 555 0 21 71 0 0 chr1 236020990 236021032 -46172632 + AT_rich Low_complexity Low_complexity 1 42 0 225 0 0 0 chr1 236023427 236023452 -46170212 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2280 105 3 0 chr1 236023785 236024081 -46169583 - AluSx SINE Alu -15 297 1 363 44 0 0 chr1 236025121 236025166 -46168498 + (CA)n Simple_repeat Simple_repeat 1 45 0 1761 167 10 20 chr1 236025552 236025858 -46167806 - AluJo SINE Alu -4 308 6 214 285 73 60 chr1 236027476 236027627 -46166037 + MIR SINE MIR 51 203 -59 621 205 0 31 chr1 236027905 236028032 -46165632 + FLAM_A SINE Alu 8 130 -12 2416 102 0 3 chr1 236028033 236028346 -46165318 + AluSx SINE Alu 1 312 0 204 214 0 0 chr1 236029943 236029985 -46163679 + (CA)n Simple_repeat Simple_repeat 1 42 0 203 200 0 0 chr1 236033882 236033917 -46159747 + A-rich Low_complexity Low_complexity 1 35 0 205 216 0 0 chr1 236033998 236034035 -46159629 + T-rich Low_complexity Low_complexity 1 37 0 3113 66 13 33 chr1 236036624 236037076 -46156588 + L1PA10 LINE L1 5722 6164 -4 2368 71 7 7 chr1 236037462 236037759 -46155905 - AluSp SINE Alu -16 297 1 1912 157 0 17 chr1 236037866 236038029 -46155635 - AluSx SINE Alu -17 295 138 2265 125 0 0 chr1 236038029 236038342 -46155322 - AluSq SINE Alu 0 313 1 1912 157 0 17 chr1 236038342 236038478 -46155186 - AluSx SINE Alu -174 138 1 21 71 0 0 chr1 236039183 236039225 -46154439 + AT_rich Low_complexity Low_complexity 1 42 0 265 371 17 11 chr1 236039398 236039573 -46154091 + MER5B DNA MER1_type 2 177 -1 22 35 0 0 chr1 236039655 236039684 -46153980 + AT_rich Low_complexity Low_complexity 1 29 0 1977 146 0 0 chr1 236040199 236040479 -46153185 + AluSx SINE Alu 3 282 -30 859 164 0 21 chr1 236040826 236040966 -46152698 - AluJb SINE Alu -174 138 2 2064 121 7 3 chr1 236041704 236042009 -46151655 + AluSg SINE Alu 1 306 0 831 134 8 15 chr1 236042020 236042154 -46151510 + FLAM_C SINE Alu 1 133 0 187 289 48 12 chr1 236042528 236042611 -46151053 + MIR SINE MIR 153 238 -24 200 182 0 0 chr1 236042616 236042649 -46151015 + (CACCAT)n Simple_repeat Simple_repeat 3 35 0 1934 134 3 3 chr1 236042757 236043041 -46150623 - AluJo SINE Alu -18 294 11 237 65 0 0 chr1 236044101 236044132 -46149532 + (CA)n Simple_repeat Simple_repeat 1 31 0 210 257 97 44 chr1 236044265 236044378 -46149286 + MIR SINE MIR 137 255 -7 294 73 0 24 chr1 236044712 236044753 -46148911 - Alu SINE Alu -261 41 2 2293 96 0 0 chr1 236044762 236045055 -46148609 - AluSx SINE Alu -19 293 1 2157 130 3 0 chr1 236045527 236045820 -46147844 + AluSp SINE Alu 2 295 -18 1738 159 32 7 chr1 236045856 236046133 -46147531 - AluJb SINE Alu -28 284 1 2308 96 17 0 chr1 236046265 236046567 -46147097 - AluSg SINE Alu -3 307 1 2371 70 0 17 chr1 236047394 236047696 -46145968 + AluY SINE Alu 1 297 -14 1206 137 71 39 chr1 236048078 236048285 -46145379 + L1MB2 LINE L1 5906 6124 -47 2424 93 0 0 chr1 236048285 236048587 -46145077 + AluSc SINE Alu 1 302 -7 1206 137 71 39 chr1 236048587 236048634 -46145030 + L1MB2 LINE L1 6124 6168 -3 242 277 252 0 chr1 236049016 236049135 -46144529 + L3 LINE CR1 1143 1291 -286 51 17 0 0 chr1 236049388 236049446 -46144218 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr1 236049460 236049481 -46144183 + AT_rich Low_complexity Low_complexity 1 21 0 204 125 0 0 chr1 236049648 236049680 -46143984 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1619 143 39 45 chr1 236049684 236049970 -46143694 - AluJo SINE Alu -28 284 1 26 30 0 0 chr1 236050088 236050121 -46143543 + AT_rich Low_complexity Low_complexity 1 33 0 2388 90 0 3 chr1 236050403 236050703 -46142961 + AluSx SINE Alu 1 299 -13 1648 158 135 0 chr1 236050945 236051249 -46142415 + MER7A DNA MER2_type 1 343 -3 450 263 150 0 chr1 236051329 236051462 -46142202 + MIR SINE MIR 2 154 -108 1628 168 20 46 chr1 236051740 236052043 -46141621 - AluJo SINE Alu -17 295 1 381 289 133 77 chr1 236052275 236052335 -46141329 - L3 LINE CR1 -130 1447 1392 2136 102 7 26 chr1 236052335 236052639 -46141025 + AluSx SINE Alu 2 299 -13 381 289 133 77 chr1 236052639 236053098 -46140566 - L3 LINE CR1 -185 1392 899 734 314 93 13 chr1 236053104 236053480 -46140184 - L3 LINE CR1 -813 764 359 2218 114 3 7 chr1 236053812 236054119 -46139545 - AluSq SINE Alu -7 306 1 742 172 339 27 chr1 236054121 236054342 -46139322 - AluJo SINE Alu -21 291 2 276 32 0 0 chr1 236054374 236054405 -46139259 + U6 snRNA snRNA 2 32 -75 1519 171 0 44 chr1 236054407 236054705 -46138959 + AluJb SINE Alu 1 285 -27 202 285 194 0 chr1 236054856 236055000 -46138664 - MIR SINE MIR -44 218 47 1444 187 74 11 chr1 236055264 236055547 -46138117 - AluJb SINE Alu -11 301 1 810 128 16 16 chr1 236055549 236055674 -46137990 - AluJo/FLAM SINE Alu -180 132 8 1898 142 3 23 chr1 236055789 236056098 -46137566 - AluSx SINE Alu -9 303 1 1727 168 34 3 chr1 236056132 236056430 -46137234 + AluJo SINE Alu 3 309 -3 209 81 0 27 chr1 236056615 236056652 -46137012 + (TA)n Simple_repeat Simple_repeat 1 36 0 2507 30 26 7 chr1 236056811 236057116 -46136548 + AluY SINE Alu 1 311 0 2458 197 137 2 chr1 236057344 236057913 -46135751 - LTR65 LTR ERV1 -23 646 1 2417 49 0 3 chr1 236058330 236058653 -46135011 + AluY SINE Alu 1 322 0 596 218 161 35 chr1 236059445 236059619 -46134045 - MER6B DNA MER2_type -5 205 10 197 345 94 11 chr1 236060038 236060229 -46133435 + MIR SINE MIR 50 256 -6 717 222 129 55 chr1 236060274 236060418 -46133246 + MER46C DNA MER2_type 4 136 -202 2551 68 3 0 chr1 236060418 236060725 -46132939 - AluSp SINE Alu -5 308 1 717 222 129 55 chr1 236060725 236060891 -46132773 + MER46C DNA MER2_type 136 337 -1 1219 136 61 5 chr1 236061095 236061293 -46132371 + AluJb SINE Alu 86 294 -18 234 303 168 7 chr1 236061512 236061667 -46131997 + MIR SINE MIR 48 227 -35 2262 106 3 0 chr1 236061807 236062100 -46131564 + AluSq SINE Alu 1 294 -19 405 0 0 0 chr1 236062237 236062282 -46131382 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr1 236064185 236064213 -46129451 + AT_rich Low_complexity Low_complexity 1 28 0 23 77 0 0 chr1 236065532 236065571 -46128093 + GC_rich Low_complexity Low_complexity 1 39 0 729 254 82 30 chr1 236066672 236066904 -46126760 + MIR SINE MIR 9 252 -10 2123 109 0 22 chr1 236067539 236067852 -46125812 - AluSx SINE Alu -6 306 1 4359 132 29 11 chr1 236067860 236068579 -46125085 - L1MB3 LINE L1 0 6183 5452 2419 84 0 0 chr1 236068589 236068887 -46124777 - AluSx SINE Alu -14 298 1 1940 82 93 0 chr1 236068887 236069156 -46124508 - AluSx SINE Alu -18 294 1 28 0 0 0 chr1 236070294 236070322 -46123342 + AT_rich Low_complexity Low_complexity 1 28 0 425 225 73 53 chr1 236070777 236070928 -46122736 + MIR SINE MIR 20 173 -89 2245 99 0 0 chr1 236071117 236071420 -46122244 + AluSg SINE Alu 1 303 0 199 209 132 22 chr1 236071634 236071725 -46121939 + L2 LINE L2 2272 2372 -942 6154 106 35 63 chr1 236071778 236072637 -46121027 - L1MA9 LINE L1 -6 6306 5478 1667 135 65 4 chr1 236072637 236072897 -46120767 - AluSq SINE Alu -3 310 35 6154 106 35 63 chr1 236072897 236073200 -46120464 - L1MA9 LINE L1 -834 5478 5168 2066 107 0 60 chr1 236073593 236073912 -46119752 + AluSx SINE Alu 1 300 -12 336 260 172 60 chr1 236073917 236074407 -46119257 + L1MC4a LINE L1 5207 5280 -866 2155 102 10 10 chr1 236074407 236074702 -46118962 + AluSx SINE Alu 1 295 -17 336 260 172 60 chr1 236074702 236074835 -46118829 + L1MC4a LINE L1 5280 5397 -749 26 0 0 0 chr1 236074852 236074878 -46118786 + AT_rich Low_complexity Low_complexity 1 26 0 2218 118 0 3 chr1 236074979 236075283 -46118381 - AluSc SINE Alu -6 303 1 2170 134 0 0 chr1 236075283 236075580 -46118084 - AluSx SINE Alu -12 300 3 391 197 0 0 chr1 236075629 236075705 -46117959 + MIR SINE MIR 59 134 -128 1820 174 46 84 chr1 236075706 236075880 -46117784 + MLT1D LTR MaLR 3 182 -323 1914 133 9 50 chr1 236075880 236076203 -46117461 + AluSx SINE Alu 3 312 0 1820 174 46 84 chr1 236076203 236076226 -46117438 + MLT1D LTR MaLR 182 204 -301 1516 174 0 85 chr1 236076226 236076566 -46117098 + AluJb SINE Alu 4 316 0 1820 174 46 84 chr1 236076566 236076841 -46116823 + MLT1D LTR MaLR 204 461 -44 890 193 6 18 chr1 236076932 236077098 -46116566 + FRAM SINE Alu 1 164 -12 1858 160 13 67 chr1 236077180 236077218 -46116446 + MLT1A1 LTR MaLR 1 39 -326 1432 205 13 20 chr1 236077218 236077516 -46116148 - AluJo SINE Alu -16 296 1 1858 160 13 67 chr1 236077516 236077546 -46116118 + MLT1A1 LTR MaLR 39 69 -296 2313 119 0 0 chr1 236077546 236077848 -46115816 + AluSq SINE Alu 1 302 -11 1858 160 13 67 chr1 236077848 236078153 -46115511 + MLT1A1 LTR MaLR 69 355 -10 181 324 44 0 chr1 236078417 236078485 -46115179 + L2 LINE L2 3241 3311 -2 776 203 0 0 chr1 236078772 236078905 -46114759 + FLAM_C SINE Alu 1 133 0 671 152 0 9 chr1 236079050 236079162 -46114502 + L1PA15 LINE L1 6055 6165 0 1988 137 0 7 chr1 236079270 236079580 -46114084 + AluSx SINE Alu 1 308 0 6670 49 35 0 chr1 236079801 236080601 -46113063 + HERVK9 LTR ERVK 5089 5916 0 3768 102 0 21 chr1 236080601 236081123 -46112541 + MER9 LTR ERVK 1 511 0 204 40 0 0 chr1 236083071 236083096 -46110568 + (AGGGGG)n Simple_repeat Simple_repeat 3 27 0 1475 161 69 31 chr1 236084080 236084371 -46109293 + AluJb SINE Alu 1 302 -10 357 200 12 0 chr1 236085726 236085806 -46107858 - MIR SINE MIR -16 246 166 749 80 18 36 chr1 236085825 236085937 -46107727 + AluSp/q SINE Alu 190 299 -14 442 271 66 0 chr1 236085940 236086062 -46107602 - MIR SINE MIR -106 156 27 2521 66 0 3 chr1 236086563 236086867 -46106797 - AluY SINE Alu -8 303 1 2200 129 0 0 chr1 236088154 236088456 -46105208 + AluSx SINE Alu 1 302 -10 181 216 59 39 chr1 236088963 236089014 -46104650 - MER5B DNA MER1_type 0 178 127 2386 103 0 3 chr1 236089048 236089358 -46104306 + AluSq SINE Alu 1 309 -4 428 231 33 41 chr1 236089358 236089479 -46104185 + MER5A DNA MER1_type 70 189 0 193 233 70 0 chr1 236089569 236089612 -46104052 - MER5B DNA MER1_type -132 46 1 1233 163 39 35 chr1 236089983 236090241 -46103423 - L1PA16 LINE L1 -2 6164 5906 2135 98 4 0 chr1 236091296 236091605 -46102059 - AluSc SINE Alu 0 310 1 22 35 0 0 chr1 236091756 236091785 -46101879 + AT_rich Low_complexity Low_complexity 1 29 0 1761 154 10 33 chr1 236091799 236092105 -46101559 - AluJb SINE Alu -13 299 1 1376 138 0 37 chr1 236092117 236092335 -46101329 - AluJb SINE Alu -7 305 96 245 162 0 26 chr1 236092503 236092569 -46101095 - MLT2D LTR ERVL -8 546 451 1628 147 79 38 chr1 236092569 236092677 -46100987 - MLT2D LTR ERVL -22 498 396 2209 118 0 3 chr1 236092677 236092974 -46100690 + AluSx SINE Alu 1 296 -16 1628 147 79 38 chr1 236092974 236093268 -46100396 - MLT2D LTR ERVL -124 396 1 435 273 134 50 chr1 236093963 236094201 -46099463 - MIR SINE MIR -3 259 2 2261 82 7 0 chr1 236094326 236094606 -46099058 + AluSp SINE Alu 1 282 -31 3783 100 0 21 chr1 236095517 236096039 -46097625 - MER9 LTR ERVK 0 511 1 6696 48 35 0 chr1 236096039 236096839 -46096825 - HERVK9 LTR ERVK 0 5916 5089 2066 147 0 7 chr1 236097060 236097366 -46096298 - AluSx SINE Alu -8 304 1 746 144 8 8 chr1 236097474 236097599 -46096065 - L1PA15 LINE L1 0 6165 6041 316 380 47 0 chr1 236097600 236097729 -46095935 + L2 LINE L2 2573 2707 -607 409 108 54 0 chr1 236098004 236098078 -46095586 - Tigger2 DNA MER2_type -215 2503 2426 448 216 209 39 chr1 236098084 236098237 -46095427 - MER5A DNA MER1_type -4 185 7 2422 56 3 31 chr1 236098346 236098666 -46094998 - AluY SINE Alu 0 311 1 2129 132 0 3 chr1 236098671 236098966 -46094698 - AluSg SINE Alu -16 294 1 308 298 77 55 chr1 236099263 236099393 -46094271 - HAL1 LINE L1 -1230 1277 1140 2272 115 3 6 chr1 236099393 236099707 -46093957 - AluSq SINE Alu 0 313 1 308 298 77 55 chr1 236099707 236099757 -46093907 - HAL1 LINE L1 -1367 1140 1093 2655 143 5 30 chr1 236099828 236100269 -46093395 - Tigger2a DNA MER2_type -4 430 1 735 266 97 46 chr1 236100382 236100604 -46093060 - L1MC4 LINE L1 0 8042 7833 2036 145 34 0 chr1 236100604 236100901 -46092763 - AluSx SINE Alu -5 307 1 735 266 97 46 chr1 236100901 236101092 -46092572 - L1MC4 LINE L1 -209 7833 7608 825 172 4 110 chr1 236101105 236101165 -46092499 - MER3 DNA MER1_type -6 203 138 832 129 0 8 chr1 236101165 236101289 -46092375 + FLAM_A SINE Alu 1 123 -10 825 172 4 110 chr1 236101289 236101455 -46092209 - MER3 DNA MER1_type -71 138 1 318 298 83 6 chr1 236101455 236101623 -46092041 - L1MC4 LINE L1 -432 7610 7430 2549 77 0 6 chr1 236103215 236103528 -46090136 + AluSx SINE Alu 1 311 -1 186 43 0 0 chr1 236103933 236103956 -46089708 + (A)n Simple_repeat Simple_repeat 1 23 0 2460 62 0 20 chr1 236104698 236105002 -46088662 - AluY SINE Alu -13 298 1 697 240 0 0 chr1 236105207 236105336 -46088328 - FLAM_A SINE Alu -4 129 1 332 239 67 89 chr1 236105821 236106001 -46087663 + MIR SINE MIR 82 257 -5 371 237 181 37 chr1 236106319 236106534 -46087130 + L2 LINE L2 2860 3105 -167 715 298 102 4 chr1 236106598 236106833 -46086831 - MIR SINE MIR 0 262 5 2280 107 30 0 chr1 236107092 236107390 -46086274 - AluSq SINE Alu -5 308 2 2367 97 0 0 chr1 236107433 236107731 -46085933 - AluSc SINE Alu -11 298 1 257 224 0 0 chr1 236108420 236108469 -46085195 + L3 LINE CR1 1527 1575 -2 442 246 91 0 chr1 236109029 236109139 -46084525 + L2 LINE L2 3150 3269 -3 232 140 0 40 chr1 236109872 236109922 -46083742 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 379 167 141 0 chr1 236111287 236111365 -46082299 + MER5A DNA MER1_type 17 105 -84 21 0 0 0 chr1 236111708 236111729 -46081935 + AT_rich Low_complexity Low_complexity 1 21 0 572 223 65 46 chr1 236112361 236112621 -46081043 + L1MC4a LINE L1 5740 6004 -1804 1237 220 56 25 chr1 236112784 236112906 -46080758 + L1MD2 LINE L1 6015 6132 -227 186 43 0 0 chr1 236112906 236112929 -46080735 + (CA)n Simple_repeat Simple_repeat 2 24 0 1237 220 56 25 chr1 236112929 236113129 -46080535 + L1MD2 LINE L1 6132 6347 -12 212 309 0 0 chr1 236113162 236113217 -46080447 - MIR3 SINE MIR -3 205 151 294 353 53 7 chr1 236113383 236113533 -46080131 - MIR3 SINE MIR -50 158 2 588 259 47 24 chr1 236114764 236114976 -46078688 + LTR33 LTR ERVL 1 217 -304 1182 176 68 44 chr1 236115050 236115432 -46078232 + MSTB2 LTR MaLR 1 457 0 512 212 135 12 chr1 236115432 236115602 -46078062 + LTR33 LTR ERVL 331 521 0 593 322 96 13 chr1 236116064 236116378 -46077286 + MLT1K LTR MaLR 10 349 -239 301 226 126 48 chr1 236116910 236117086 -46076578 - MIR SINE MIR -42 220 38 298 122 0 20 chr1 236120485 236120534 -46073130 + MIR SINE MIR 17 64 -144 579 248 51 0 chr1 236120573 236120710 -46072954 - MIR SINE MIR -10 252 109 2305 91 0 3 chr1 236121193 236121540 -46072124 + AluSp SINE Alu 1 346 0 3839 132 30 73 chr1 236121560 236121645 -46072019 + L1MB2 LINE L1 5436 5523 -648 2270 115 0 0 chr1 236121645 236121941 -46071723 + AluSx SINE Alu 1 296 -16 3839 132 30 73 chr1 236121941 236122388 -46071276 + L1MB2 LINE L1 5523 5927 -244 1958 131 62 3 chr1 236122388 236122679 -46070985 - AluJb SINE Alu -4 308 1 3839 132 30 73 chr1 236122679 236122913 -46070751 + L1MB2 LINE L1 5927 6170 -1 31 44 0 0 chr1 236125604 236125649 -46068015 + AT_rich Low_complexity Low_complexity 1 45 0 1949 170 0 3 chr1 236126410 236126716 -46066948 - AluJo SINE Alu -7 305 1 2198 119 3 3 chr1 236126720 236127015 -46066649 - AluSx SINE Alu -17 295 1 371 282 0 0 chr1 236127098 236127183 -46066481 + MIR SINE MIR 86 170 -92 185 398 20 10 chr1 236127798 236127896 -46065768 + L2 LINE L2 3166 3264 -8 249 164 33 33 chr1 236130733 236130794 -46062870 + A-rich Low_complexity Low_complexity 2 62 0 648 213 109 38 chr1 236133248 236133459 -46060205 - L1ME LINE L1 -623 5541 5316 271 122 0 0 chr1 236133485 236133534 -46060130 - AluSx SINE Alu -4 298 250 1639 117 0 0 chr1 236133535 236133748 -46059916 - AluSx SINE Alu -99 213 1 281 215 0 0 chr1 236133761 236133826 -46059838 - L1ME LINE L1 -860 5286 5222 362 154 179 0 chr1 236133905 236133983 -46059681 + L2 LINE L2 3220 3311 -2 191 245 0 94 chr1 236135707 236135760 -46057904 + MIR SINE MIR 49 96 -166 1983 128 137 88 chr1 236135802 236136233 -46057431 - LTR47A LTR ERVL 0 452 1 457 286 11 62 chr1 236136628 236136806 -46056858 - MER5A DNA MER1_type 0 189 21 367 188 29 0 chr1 236136820 236136889 -46056775 - MER5B DNA MER1_type -2 176 106 259 184 161 0 chr1 236136990 236137077 -46056587 - MIR SINE MIR -56 206 106 1386 183 6 43 chr1 236137081 236137390 -46056274 + L1M3 LINE L1 5367 5671 -509 247 302 33 24 chr1 236137397 236137523 -46056141 - L2 LINE L2 -309 2963 2836 28 0 0 0 chr1 236137616 236137644 -46056020 + AT_rich Low_complexity Low_complexity 1 28 0 372 275 171 58 chr1 236137709 236138055 -46055609 + L2 LINE L2 2151 2535 -779 1402 183 10 35 chr1 236138081 236138392 -46055272 - L1MB5 LINE L1 -9 6165 5863 401 295 32 14 chr1 236138400 236138437 -46055227 - L1PA5 LINE L1 -248 5906 5870 1131 162 53 15 chr1 236138437 236138683 -46054981 - L1MB5 LINE L1 -307 5867 5609 2290 113 0 10 chr1 236138683 236138993 -46054671 - AluSq SINE Alu -6 307 1 1131 162 53 15 chr1 236138993 236139011 -46054653 - L1MB5 LINE L1 -565 5609 5593 578 217 9 0 chr1 236139025 236139131 -46054533 - AluJo SINE Alu -94 218 112 1091 166 14 1 chr1 236139131 236139338 -46054326 - L1MB5 LINE L1 -596 5584 5373 188 161 9 223 chr1 236139338 236139450 -46054214 + MIR SINE MIR 165 252 -10 2138 100 7 0 chr1 236139577 236139883 -46053781 - AluSp SINE Alu 0 308 1 574 168 62 37 chr1 236140026 236140047 -46053617 - L1MA10 LINE L1 -2 6332 6312 1802 217 50 8 chr1 236140047 236140530 -46053134 - L1ME2 LINE L1 -10 6154 5652 * 5564 118 22 5 chr1 236140526 236141475 -46052189 - L1PA16 LINE L1 -1 6165 5200 303 238 25 38 chr1 236141476 236141556 -46052108 + L2 LINE L2 2989 3067 -205 2802 209 21 82 chr1 236141586 236141818 -46051846 + Zaphod DNA AcHobo 9 254 -3777 324 155 42 0 chr1 236141818 236141889 -46051775 - L1MA8 LINE L1 -2 6289 6216 395 207 27 63 chr1 236141889 236142000 -46051664 - U6 snRNA snRNA 0 107 1 2802 209 21 82 chr1 236142000 236142199 -46051465 + Zaphod DNA AcHobo 253 463 -3568 2123 102 0 56 chr1 236142199 236142502 -46051162 - AluSx SINE Alu -22 290 5 2802 209 21 82 chr1 236142502 236142515 -46051149 + Zaphod DNA AcHobo 463 475 -3556 2193 97 17 0 chr1 236142515 236142805 -46050859 - AluSx SINE Alu -17 295 1 2802 209 21 82 chr1 236142805 236143110 -46050554 + Zaphod DNA AcHobo 475 710 -3321 1870 172 0 16 chr1 236143110 236143418 -46050246 + AluJb SINE Alu 1 303 -9 2802 209 21 82 chr1 236143418 236143478 -46050186 + Zaphod DNA AcHobo 710 772 -3259 751 185 0 8 chr1 236143805 236143935 -46049729 - FLAM_C SINE Alu -4 129 1 535 227 201 0 chr1 236144537 236144691 -46048973 + MIR SINE MIR 23 207 -55 299 326 163 5 chr1 236144708 236144892 -46048772 + MIR SINE MIR 7 219 -43 1633 170 44 37 chr1 236146818 236147112 -46046552 - AluJb SINE Alu -16 296 1 201 74 0 0 chr1 236147312 236147339 -46046325 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 249 311 164 0 chr1 236147708 236147830 -46045834 - MIR3 SINE MIR -57 151 10 2417 95 0 0 chr1 236149000 236149295 -46044369 - AluSx SINE Alu -17 295 1 2240 117 0 3 chr1 236149304 236149603 -46044061 - AluSx SINE Alu -14 298 1 256 240 190 30 chr1 236150008 236150108 -46043556 + L2 LINE L2 3152 3267 -5 624 204 13 32 chr1 236150435 236150581 -46043083 + MIR SINE MIR 65 209 -53 2022 48 0 0 chr1 236150581 236150812 -46042852 + AluY SINE Alu 65 295 -16 270 212 0 30 chr1 236150968 236151034 -46042630 + MER5A DNA MER1_type 43 106 -83 748 184 0 0 chr1 236151373 236151482 -46042182 + FLAM_C SINE Alu 9 117 -26 2340 85 7 0 chr1 236152440 236152735 -46040929 - AluSg SINE Alu -13 297 1 326 330 37 32 chr1 236152771 236152959 -46040705 + MER5A DNA MER1_type 1 189 0 331 52 0 69 chr1 236154727 236154785 -46038879 - Alu SINE Alu -7 293 240 249 152 0 22 chr1 236154885 236154931 -46038733 + MIR SINE MIR 218 262 0 2311 102 0 0 chr1 236155070 236155364 -46038300 - AluSg SINE Alu -16 294 1 346 333 68 14 chr1 236155493 236155700 -46037964 - L3 LINE CR1 -25 1552 1335 1753 156 28 11 chr1 236155710 236155993 -46037671 - AluJo SINE Alu -24 288 1 546 282 109 42 chr1 236156145 236156429 -46037235 + L2 LINE L2 3010 3312 -1 318 295 21 0 chr1 236157536 236157631 -46036033 + L2 LINE L2 2982 3078 -194 483 340 133 26 chr1 236157733 236158427 -46035237 + L2 LINE L2 2130 2897 -417 266 253 260 7 chr1 236158570 236158720 -46034944 + MIR SINE MIR 1 188 -74 999 115 0 0 chr1 236158754 236158884 -46034780 + AluY SINE Alu 1 130 -181 1522 82 0 5 chr1 236158934 236159129 -46034535 + AluSg/x SINE Alu 117 310 -2 211 272 148 0 chr1 236160525 236160606 -46033058 + MIR SINE MIR 106 198 -64 465 222 188 0 chr1 236163556 236163700 -46029964 - MIR3 SINE MIR -3 205 35 300 232 122 0 chr1 236164292 236164374 -46029290 - MIR3 SINE MIR -17 191 100 22 0 0 0 chr1 236164826 236164848 -46028816 + AT_rich Low_complexity Low_complexity 1 22 0 2206 120 0 0 chr1 236164988 236165287 -46028377 + AluSq SINE Alu 1 299 -14 2193 110 3 0 chr1 236165292 236165583 -46028081 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 236165717 236165747 -46027917 + AT_rich Low_complexity Low_complexity 1 30 0 1605 219 33 111 chr1 236165917 236166521 -46027143 - L1MB7 LINE L1 -28 6156 5600 2257 107 0 10 chr1 236166522 236166822 -46026842 - AluSq SINE Alu -16 297 1 556 217 9 0 chr1 236166853 236166959 -46026705 - AluJo SINE Alu -94 218 112 1148 166 14 1 chr1 236166959 236167166 -46026498 - L1MB7 LINE L1 -596 5584 5373 209 216 0 0 chr1 236167194 236167231 -46026433 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 2126 100 7 0 chr1 236167403 236167709 -46025955 - AluSp SINE Alu 0 308 1 624 168 62 37 chr1 236167852 236167873 -46025791 - L1MA10 LINE L1 -2 6332 6312 1929 216 50 8 chr1 236167873 236168351 -46025313 - L1ME2 LINE L1 -10 6154 5657 486 165 10 0 chr1 236168352 236168449 -46025215 - L1PA16 LINE L1 0 6166 6069 29 0 0 0 chr1 236168568 236168597 -46025067 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr1 236168613 236168641 -46025023 + AT_rich Low_complexity Low_complexity 1 28 0 970 183 11 11 chr1 236169041 236169221 -46024443 - FRAM SINE Alu 0 176 1 192 244 0 0 chr1 236170133 236170178 -46023486 - MIR SINE MIR -94 168 124 453 135 0 14 chr1 236170181 236170255 -46023409 + AluJo SINE Alu 63 135 -177 30 59 0 0 chr1 236170255 236170306 -46023358 + AT_rich Low_complexity Low_complexity 1 51 0 931 246 66 52 chr1 236170355 236170678 -46022986 + L1ME1 LINE L1 5060 5377 -785 1667 185 4 11 chr1 236170678 236170959 -46022705 + AluJo SINE Alu 1 279 -33 261 0 0 0 chr1 236170960 236170989 -46022675 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 931 246 66 52 chr1 236170989 236171304 -46022360 + L1ME1 LINE L1 5376 5704 -458 273 323 21 0 chr1 236171315 236171408 -46022256 + L1ME1 LINE L1 5834 5928 -238 457 253 112 56 chr1 236171729 236172033 -46021631 + L1ME4a LINE L1 5798 6118 -3 777 201 0 0 chr1 236172037 236172171 -46021493 + AluJo SINE Alu 2 135 -177 32 57 0 0 chr1 236172171 236172224 -46021440 + AT_rich Low_complexity Low_complexity 1 53 0 997 91 0 0 chr1 236172474 236172595 -46021069 - AluSg SINE Alu -189 121 1 388 171 11 34 chr1 236172617 236172705 -46020959 + MIR SINE MIR 151 236 -26 995 50 0 0 chr1 236172713 236172857 -46020807 - AluY SINE Alu 0 308 165 225 0 0 0 chr1 236172857 236172882 -46020782 + (CA)n Simple_repeat Simple_repeat 2 26 0 787 248 13 13 chr1 236173318 236173548 -46020116 + L1ME4a LINE L1 5614 5843 -278 2134 90 4 0 chr1 236173549 236173817 -46019847 + AluSp SINE Alu 1 269 -44 222 37 0 0 chr1 236173817 236173844 -46019820 + (GAAAA)n Simple_repeat Simple_repeat 5 31 0 191 293 24 24 chr1 236175409 236175491 -46018173 - MIR SINE MIR -111 151 70 193 325 26 0 chr1 236176755 236176832 -46016832 + MIR SINE MIR 90 168 -94 967 179 11 17 chr1 236177742 236177921 -46015743 + FRAM SINE Alu 1 174 -2 28 0 0 0 chr1 236178316 236178344 -46015320 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr1 236178360 236178389 -46015275 + AT_rich Low_complexity Low_complexity 1 29 0 320 148 0 0 chr1 236178521 236178575 -46015089 - AluSp/q SINE Alu -8 295 242 10176 200 5 12 chr1 236178576 236180730 -46012934 + L1 LINE L1 2609 4746 -1400 3075 118 64 98 chr1 236180730 236181343 -46012321 + LTR14B LTR ERVK 15 606 -2 478 237 11 0 chr1 236181345 236181438 -46012226 + HERVK14 LTR ERVK 1 94 -5851 11991 102 3 1 chr1 236181540 236183957 -46009707 + HERVK14 LTR ERVK 288 2777 -3168 9633 201 33 5 chr1 236233969 236236015 -45957649 - L1M4b LINE L1 -1862 5095 2992 243 88 0 0 chr1 236236016 236236050 -45957614 + (TA)n Simple_repeat Simple_repeat 1 34 0 834 184 95 125 chr1 236236050 236236473 -45957191 - LTR7 LTR ERV1 -40 410 1 3203 147 27 18 chr1 236236473 236237025 -45956639 - HERVH LTR ERV1 0 7713 7157 1518 164 19 0 chr1 236237018 236237281 -45956383 - HERVH LTR ERV1 -1697 6016 5749 * 6546 132 3 4 chr1 236237278 236239120 -45954544 - HERVH LTR ERV1 -1805 5286 3140 * 12831 137 35 23 chr1 236239099 236241275 -45952389 - HERVH LTR ERV1 -4718 2995 793 2490 163 11 24 chr1 236241329 236241794 -45951870 - HERVH LTR ERV1 -7254 459 1 710 105 19 19 chr1 236241796 236241901 -45951763 - LTR7 LTR ERV1 0 450 346 1239 184 34 8 chr1 236241901 236242167 -45951497 - L1M4b LINE L1 -3956 3002 2730 3957 95 12 4 chr1 236242167 236242674 -45950990 + MER9 LTR ERVK 1 511 0 21854 72 9 9 chr1 236242674 236245462 -45948202 + HERVK9 LTR ERVK 1 2786 -3130 1980 39 0 0 chr1 236245462 236245693 -45947971 + HERVK9 LTR ERVK 3711 3941 -1975 * 7639 106 10 3 chr1 236245683 236246739 -45946925 + HERVK9 LTR ERVK 4571 5634 -282 2335 110 14 13 chr1 236246764 236247118 -45946546 + HERVK9 LTR ERVK 4936 5916 0 3456 102 4 19 chr1 236247118 236247637 -45946027 + MER9 LTR ERVK 1 511 0 1505 222 14 7 chr1 236247671 236247968 -45945696 - AluJb SINE Alu -13 299 1 741 139 41 6 chr1 236247980 236248152 -45945512 + CT-rich Low_complexity Low_complexity 3 180 0 231 114 0 0 chr1 236248156 236248191 -45945473 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 3411 177 38 33 chr1 236248210 236248464 -45945200 - L1M4b LINE L1 -4760 2198 1947 1575 225 0 7 chr1 236248464 236248771 -45944893 - AluJo SINE Alu -7 305 1 3411 177 38 33 chr1 236248771 236249273 -45944391 - L1M4b LINE L1 -5011 1947 1438 3017 185 22 4 chr1 236249286 236249821 -45943843 - L1M4b LINE L1 -6231 727 183 683 205 19 8 chr1 236249816 236249995 -45943669 - L1 LINE L1 -970 5176 4992 * 336 200 70 0 chr1 236249962 236250062 -45943602 - L1M4b LINE L1 -6664 195 89 * 261 0 0 0 chr1 236250069 236250098 -45943566 + (TG)n Simple_repeat Simple_repeat 2 30 0 2222 126 10 0 chr1 236250098 236250408 -45943256 - AluSp SINE Alu 0 313 1 1023 104 8 0 chr1 236250408 236250542 -45943122 - AluSq/x SINE Alu -178 135 1 323 181 153 0 chr1 236250556 236250628 -45943036 - L1M4b LINE L1 -6762 97 15 34557 92 16 28 chr1 236250785 236252750 -45940914 + L1PA6 LINE L1 11 1999 -4155 400 103 0 0 chr1 236252750 236252818 -45940846 + L1PA2 LINE L1 6088 6155 0 34557 92 16 28 chr1 236252818 236257090 -45936574 + L1PA6 LINE L1 1999 6152 -2 482 282 79 42 chr1 236257092 236257436 -45936228 + L1M4 LINE L1 4085 4450 -1696 2255 112 0 7 chr1 236257436 236257732 -45935932 + AluSx SINE Alu 1 294 -18 482 282 79 42 chr1 236257732 236257816 -45935848 + L1M4 LINE L1 4450 4529 -1617 489 110 0 0 chr1 236257999 236258072 -45935592 + (TA)n Simple_repeat Simple_repeat 2 74 0 2362 58 0 27 chr1 236258072 236258367 -45935297 - AluY SINE Alu -24 287 1 2408 142 18 37 chr1 236258378 236258501 -45935163 - MER44D DNA MER2_type -1982 505 381 2254 124 0 0 chr1 236258501 236258807 -45934857 - AluSc SINE Alu -3 306 1 2408 142 18 37 chr1 236258807 236259120 -45934544 - MER44D DNA MER2_type -2106 381 22 479 223 216 0 chr1 236259260 236259347 -45934317 - L1M4b LINE L1 -6664 195 128 216 0 0 0 chr1 236259347 236259371 -45934293 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 479 223 216 0 chr1 236259371 236259431 -45934233 - L1M4b LINE L1 -6731 128 16 341 136 0 17 chr1 236259427 236259486 -45934178 + L1M2c LINE L1 502 559 -6230 * 1409 158 46 8 chr1 236259520 236259780 -45933884 - MLT1A1 LTR MaLR -84 281 12 1265 254 55 11 chr1 236259830 236260192 -45933472 - L1MC4 LINE L1 -979 7063 6686 415 131 0 13 chr1 236260192 236260261 -45933403 - MLT1A1 LTR MaLR -78 318 225 1646 130 60 85 chr1 236260261 236260614 -45933050 - MER7A DNA MER2_type -3 343 2 242 213 0 25 chr1 236260623 236260703 -45932961 + (CATA)n Simple_repeat Simple_repeat 3 80 0 2160 234 59 88 chr1 236260725 236261298 -45932366 + L1MC4 LINE L1 7086 7674 -368 1946 164 3 3 chr1 236261298 236261608 -45932056 + AluJb SINE Alu 1 310 -2 2160 234 59 88 chr1 236261608 236261873 -45931791 + L1MC4 LINE L1 7674 7945 -97 2247 107 7 10 chr1 236261873 236262183 -45931481 + AluSq SINE Alu 1 309 -4 2160 234 59 88 chr1 236262183 236262268 -45931396 + L1MC4 LINE L1 7945 7982 -60 1691 173 0 77 chr1 236262268 236262592 -45931072 - AluJo SINE Alu -13 299 1 2160 234 59 88 chr1 236262592 236262652 -45931012 + L1MC4 LINE L1 7982 8042 0 382 344 71 0 chr1 236262776 236262930 -45930734 - L3 LINE CR1 -17 1560 1396 300 243 172 53 chr1 236263365 236263534 -45930130 + LTR16C LTR ERVL 303 491 0 611 178 47 16 chr1 236263747 236263876 -45929788 - FLAM_C SINE Alu 0 133 1 236 216 39 0 chr1 236266675 236266726 -45926938 + G-rich Low_complexity Low_complexity 3 55 0 309 68 0 0 chr1 236267008 236267052 -45926612 + (TG)n Simple_repeat Simple_repeat 1 44 0 328 278 16 40 chr1 236267144 236267270 -45926394 + MIR3 SINE MIR 81 203 -5 2304 112 7 0 chr1 236267587 236267890 -45925774 - AluSx SINE Alu -7 305 1 430 314 69 16 chr1 236267893 236268081 -45925583 + L2 LINE L2 3115 3312 -1 285 285 77 23 chr1 236268114 236268244 -45925420 - MIR3 SINE MIR -28 180 44 1974 148 30 7 chr1 236268313 236268618 -45925046 + AluSx SINE Alu 1 312 0 189 267 89 50 chr1 236269080 236269181 -45924483 + MIR SINE MIR 37 141 -67 32 0 0 0 chr1 236269288 236269320 -45924344 + AT_rich Low_complexity Low_complexity 1 32 0 187 250 45 0 chr1 236270178 236270222 -45923442 - MIR SINE MIR -63 145 100 496 340 30 5 chr1 236271273 236271470 -45922194 - MIR3 SINE MIR -5 203 2 2431 81 3 0 chr1 236271993 236272291 -45921373 - AluSg SINE Alu -11 299 1 1996 105 0 22 chr1 236273638 236273915 -45919749 - AluSx SINE Alu -20 292 22 2190 133 13 0 chr1 236274114 236274423 -45919241 + AluSq SINE Alu 1 313 0 1514 199 20 7 chr1 236276290 236276582 -45917082 - AluJo SINE Alu -16 296 1 249 319 86 0 chr1 236276605 236276721 -45916943 + MIR SINE MIR 131 256 -6 468 256 40 18 chr1 236277148 236277322 -45916342 + MIR SINE MIR 20 190 -67 345 241 9 71 chr1 236277461 236277573 -45916091 - MIR SINE MIR -70 192 88 442 364 47 20 chr1 236277658 236277911 -45915753 - MIR SINE MIR 0 262 3 431 256 37 49 chr1 236278433 236278597 -45915067 + MIR SINE MIR 29 190 -72 458 234 79 4 chr1 236279676 236279831 -45913833 - MIR SINE MIR -55 153 14 246 290 14 0 chr1 236279908 236279977 -45913687 + L2 LINE L2 3194 3263 -9 237 317 32 16 chr1 236281070 236281193 -45912471 + L3b LINE CR1 1332 1456 -127 196 146 122 0 chr1 236281761 236281802 -45911862 + MIR SINE MIR 100 145 -63 * 491 333 191 17 chr1 236281799 236282556 -45911108 + L2 LINE L2 2376 3267 -5 2334 107 0 0 chr1 236282955 236283253 -45910411 - AluSx SINE Alu -14 298 1 371 299 94 75 chr1 236284869 236285123 -45908541 + L2 LINE L2 3014 3272 0 207 0 0 0 chr1 236286048 236286071 -45907593 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 274 154 0 19 chr1 236286073 236286125 -45907539 - L2 LINE L2 -12 3301 3251 355 280 133 0 chr1 236288411 236288554 -45905110 + MIR SINE MIR 46 207 -55 230 237 0 79 chr1 236288758 236288834 -45904830 + L2 LINE L2 3244 3313 0 326 265 162 0 chr1 236288974 236289091 -45904573 + MIR SINE MIR 120 255 -7 312 70 0 0 chr1 236289731 236289774 -45903890 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 240 283 0 17 chr1 236290661 236290721 -45902943 - MIR3 SINE MIR -28 180 122 182 343 29 0 chr1 236291938 236292008 -45901656 + MIR SINE MIR 190 261 -1 2171 121 3 10 chr1 236292647 236292960 -45900704 - AluSx SINE Alu -1 311 1 253 119 0 0 chr1 236296104 236296146 -45897518 + L2 LINE L2 3271 3312 -1 215 128 26 0 chr1 236497049 236497088 -45696576 - L2 LINE L2 -17 3255 3216 * 613 275 52 26 chr1 236497056 236497249 -45696415 - MIR SINE MIR -19 243 46 329 336 55 8 chr1 236498784 236498912 -45694752 - L2 LINE L2 0 3272 3139 2139 110 0 16 chr1 236499149 236499466 -45694198 - AluSx SINE Alu 0 312 1 255 274 14 14 chr1 236499591 236499664 -45694000 + MER113 DNA MER1_type? 445 517 -4 313 320 16 58 chr1 236499781 236499994 -45693670 + MIR SINE MIR 15 217 -45 775 283 0 11 chr1 236500092 236500279 -45693385 + MIR SINE MIR 10 194 -68 1951 134 0 0 chr1 236502200 236502492 -45691172 - AluSx SINE Alu -20 292 1 2133 112 0 7 chr1 236502503 236502807 -45690857 - AluSx SINE Alu -9 303 2 423 0 0 0 chr1 236503977 236504024 -45689640 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 80 20 0 chr1 236504284 236504334 -45689330 + (TC)n Simple_repeat Simple_repeat 2 52 0 291 362 8 8 chr1 236505498 236505625 -45688039 + MIR3 SINE MIR 34 160 -48 192 392 63 13 chr1 236505909 236506067 -45687597 - L3b LINE CR1 -119 1464 1299 21 0 0 0 chr1 236506207 236506228 -45687436 + AT_rich Low_complexity Low_complexity 1 21 0 189 167 21 83 chr1 236506406 236506454 -45687210 - L2 LINE L2 -5 3308 3264 26 0 0 0 chr1 236507462 236507488 -45686176 + AT_rich Low_complexity Low_complexity 1 26 0 1841 118 13 57 chr1 236508864 236509179 -45684485 - AluJb SINE Alu -11 301 1 258 208 38 0 chr1 236509288 236509341 -45684323 + L3 LINE CR1 1510 1564 -13 1893 116 0 0 chr1 236509473 236509740 -45683924 + AluSq SINE Alu 15 281 -32 198 71 0 0 chr1 236509742 236509770 -45683894 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 5946 137 19 29 chr1 236510327 236510608 -45683056 - L1MA4 LINE L1 -6 6294 6012 228 35 0 0 chr1 236510608 236510637 -45683027 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2024 116 0 0 chr1 236510637 236510921 -45682743 - AluSx SINE Alu -28 284 1 1782 120 4 4 chr1 236510930 236511189 -45682475 - AluSq SINE Alu -10 303 45 5946 137 19 29 chr1 236511189 236512266 -45681398 - L1MA4 LINE L1 -295 6005 4940 1569 167 31 7 chr1 236512913 236513201 -45680463 + AluJo SINE Alu 1 295 -17 22 25 0 25 chr1 236513201 236513221 -45680443 + AT_rich Low_complexity Low_complexity 1 20 -19 2192 99 0 16 chr1 236513221 236513535 -45680129 + AluY SINE Alu 1 309 -2 22 25 0 25 chr1 236513535 236513554 -45680110 + AT_rich Low_complexity Low_complexity 20 39 0 724 261 50 54 chr1 236513618 236513744 -45679920 + MIR SINE MIR 2 127 -135 1588 176 52 0 chr1 236513744 236514034 -45679630 - AluSx SINE Alu -7 305 1 724 261 50 54 chr1 236514034 236514167 -45679497 + MIR SINE MIR 127 260 -2 203 368 64 9 chr1 236514205 236514322 -45679342 - MIR3 SINE MIR -49 159 36 189 349 87 40 chr1 236514434 236514560 -45679104 - L2 LINE L2 -9 3304 3173 286 318 200 19 chr1 236514594 236515125 -45678539 - L2 LINE L2 -339 2975 2253 907 262 216 14 chr1 236516708 236517301 -45676363 - L2 LINE L2 -83 3230 2535 1914 210 43 10 chr1 236517366 236517762 -45675902 + L1MC4a LINE L1 5497 5905 -1903 2192 185 67 0 chr1 236517776 236518165 -45675499 - MER47B DNA MER2_type 0 418 4 1950 184 96 19 chr1 236518192 236518440 -45675224 + L1MC4a LINE L1 5913 6141 -1667 1888 143 16 7 chr1 236518440 236518747 -45674917 + AluSx SINE Alu 1 310 -2 1950 184 96 19 chr1 236518747 236519019 -45674645 + L1MC4a LINE L1 6141 6473 -1335 187 161 0 0 chr1 236519033 236519064 -45674600 + L2 LINE L2 3271 3301 -12 237 182 169 26 chr1 236519219 236519296 -45674368 - MIR SINE MIR -56 206 119 263 337 63 46 chr1 236520737 236520912 -45672752 + MIR SINE MIR 34 211 -51 183 161 32 0 chr1 236521045 236521076 -45672588 + L2 LINE L2 3249 3280 -33 944 121 264 0 chr1 236521099 236521281 -45672383 - MER30 DNA MER1_type 0 230 1 1312 180 19 15 chr1 236521432 236521693 -45671971 - AluJo SINE Alu -9 303 42 627 317 67 48 chr1 236525241 236525572 -45668092 - L2 LINE L2 0 3313 2977 2210 88 3 0 chr1 236525632 236525927 -45667737 - AluSc SINE Alu -12 297 2 333 286 103 69 chr1 236525927 236526123 -45667541 - L2 LINE L2 -587 2727 2522 447 337 177 13 chr1 236526256 236526645 -45667019 - L2 LINE L2 -722 2592 2140 966 272 122 43 chr1 236526834 236527338 -45666326 + Charlie8 DNA MER1_type 1 532 -1885 313 140 35 18 chr1 236528261 236528318 -45665346 - MLT1E LTR MaLR -66 527 470 1893 122 38 0 chr1 236528973 236529261 -45664403 + AluSx SINE Alu 1 299 -13 198 143 0 0 chr1 236531775 236531810 -45661854 + L3b LINE CR1 1359 1393 -190 195 305 143 10 chr1 236532019 236532117 -45661547 - MIR SINE MIR -66 142 44 235 304 78 29 chr1 236532445 236532547 -45661117 - MIR SINE MIR -148 114 8 200 294 56 33 chr1 236532872 236533052 -45660612 + L2 LINE L2 2870 3053 -219 207 292 77 0 chr1 236533129 236533194 -45660470 + L2 LINE L2 3191 3260 -12 384 244 35 17 chr1 236533324 236533439 -45660225 - MLT1I LTR MaLR -48 361 245 822 117 0 104 chr1 236533587 236533741 -45659923 + AluY SINE Alu 1 138 -173 1807 118 0 57 chr1 236533743 236534039 -45659625 + AluSg SINE Alu 13 291 -19 1652 189 0 16 chr1 236536580 236536897 -45656767 + AluJb SINE Alu 1 312 0 363 60 0 0 chr1 236537179 236537229 -45656435 + (CA)n Simple_repeat Simple_repeat 2 51 0 249 148 0 56 chr1 236537624 236537678 -45655986 + MIR SINE MIR 80 130 -132 2409 78 0 0 chr1 236538298 236538604 -45655060 + AluSg1 SINE Alu 1 306 -3 408 286 131 8 chr1 236539704 236539963 -45653701 + L1ME4a LINE L1 5629 5919 -202 * 1907 125 115 33 chr1 236539747 236540069 -45653595 + L1MB3 LINE L1 5685 6048 -135 2033 136 0 7 chr1 236540069 236540370 -45653294 + AluSx SINE Alu 1 299 -13 1907 125 115 33 chr1 236540370 236540446 -45653218 + L1MB3 LINE L1 6048 6116 -67 183 267 200 11 chr1 236541681 236541771 -45651893 - MIR SINE MIR -82 126 20 180 256 33 91 chr1 236543817 236543938 -45649726 + MIR SINE MIR 32 145 -63 2726 19 0 0 chr1 236546343 236546653 -45647011 - AluYa5 SINE Alu -1 310 1 383 266 92 23 chr1 236547183 236547356 -45646308 + MIR3 SINE MIR 6 190 -18 561 251 12 13 chr1 236547748 236547910 -45645754 - MIR SINE MIR -60 148 32 252 367 37 0 chr1 236547993 236548102 -45645562 - L2 LINE L2 -9 3263 3151 242 255 165 25 chr1 236548196 236548396 -45645268 - L1ME4a LINE L1 -12 6109 5882 25 31 0 0 chr1 236548498 236548530 -45645134 + AT_rich Low_complexity Low_complexity 1 32 0 1355 178 130 15 chr1 236548530 236548670 -45644994 - AluJo SINE Alu -2 300 178 558 0 0 0 chr1 236548670 236548732 -45644932 + (TATTG)n Simple_repeat Simple_repeat 2 63 0 1355 178 130 15 chr1 236548732 236548860 -45644804 - AluJo SINE Alu -124 178 1 303 251 134 41 chr1 236549103 236549274 -45644390 - L1MC5 LINE L1 -770 7191 7005 274 341 8 8 chr1 236549297 236549420 -45644244 - L1MC4 LINE L1 -981 7061 6939 374 304 108 28 chr1 236550170 236550384 -45643280 - MIR SINE MIR -25 237 7 948 238 108 19 chr1 236550578 236550885 -45642779 + MER46C DNA MER2_type 5 338 0 960 159 66 18 chr1 236553342 236553569 -45640095 - Charlie5 DNA MER1_type 0 2621 2384 776 160 32 0 chr1 236553628 236553753 -45639911 - AluJb SINE Alu -27 285 157 257 133 53 0 chr1 236553788 236553863 -45639801 + (TA)n Simple_repeat Simple_repeat 1 79 0 291 54 0 0 chr1 236553905 236553942 -45639722 + (TG)n Simple_repeat Simple_repeat 2 38 0 222 329 0 14 chr1 236554063 236554133 -45639531 - MIR SINE MIR -174 88 20 381 244 16 79 chr1 236554467 236554594 -45639070 - MER5B DNA MER1_type -50 128 10 2001 139 3 3 chr1 236555537 236555847 -45637817 + AluSq SINE Alu 1 310 -3 202 363 39 0 chr1 236556339 236556441 -45637223 - MIR SINE MIR -70 192 87 2261 116 0 0 chr1 236556631 236556942 -45636722 - AluSx SINE Alu -1 311 1 180 0 0 0 chr1 236557025 236557045 -45636619 + (A)n Simple_repeat Simple_repeat 1 20 0 543 307 35 38 chr1 236557245 236557470 -45636194 + MIR SINE MIR 37 259 -3 203 339 94 8 chr1 236557609 236557736 -45635928 - L3b LINE CR1 -106 1477 1340 599 264 110 0 chr1 236557844 236557999 -45635665 - MER5B DNA MER1_type -6 172 1 1662 136 3 107 chr1 236560149 236560495 -45633169 - AluJo SINE Alu 0 312 3 323 294 43 125 chr1 236560714 236561082 -45632582 - L2 LINE L2 -3 3269 2932 223 303 145 21 chr1 236561147 236561292 -45632372 - L2 LINE L2 -485 2829 2667 2167 72 4 0 chr1 236561344 236561646 -45632018 - AluSp SINE Alu 0 309 7 427 276 39 8 chr1 236562034 236562161 -45631503 + MER5A DNA MER1_type 59 189 0 2121 115 0 10 chr1 236562437 236562749 -45630915 - AluSc SINE Alu 0 309 1 1891 110 11 7 chr1 236562755 236563086 -45630578 - AluSx SINE Alu 0 332 1 190 132 38 19 chr1 236563315 236563368 -45630296 + GA-rich Low_complexity Low_complexity 1 54 0 378 0 0 0 chr1 236563678 236563720 -45629944 + (CA)n Simple_repeat Simple_repeat 2 43 0 458 260 136 19 chr1 236564649 236564803 -45628861 + MIR SINE MIR 81 252 -10 198 291 222 8 chr1 236565118 236565235 -45628429 + MER5A DNA MER1_type 7 148 -41 1006 290 109 0 chr1 236565259 236565607 -45628057 + L2 LINE L2 2928 3313 0 566 228 37 22 chr1 236565635 236565771 -45627893 + MLT1I LTR MaLR 6 143 -266 489 277 51 0 chr1 236565852 236565989 -45627675 + MLT1I LTR MaLR 266 409 0 297 0 0 0 chr1 236566586 236566619 -45627045 + (TG)n Simple_repeat Simple_repeat 1 33 0 884 204 55 11 chr1 236567632 236567813 -45625851 + MER5A DNA MER1_type 1 189 0 192 252 39 87 chr1 236568325 236568428 -45625236 - MIR3 SINE MIR -2 206 109 591 190 26 0 chr1 236568512 236568628 -45625036 - MER45A DNA AcHobo 0 178 60 324 48 0 0 chr1 236570362 236570404 -45623260 + (CA)n Simple_repeat Simple_repeat 1 42 0 678 257 75 42 chr1 236572315 236572556 -45621108 + MIR SINE MIR 13 261 -1 202 258 76 0 chr1 236572813 236572879 -45620785 + L2 LINE L2 3201 3271 -1 320 302 0 10 chr1 236577023 236577119 -45616545 - MIR SINE MIR -65 143 49 2110 105 0 3 chr1 236578502 236578796 -45614868 - AluY SINE Alu -18 293 1 1990 133 17 13 chr1 236579231 236579533 -45614131 + AluJo SINE Alu 2 304 -8 190 277 0 31 chr1 236581317 236581382 -45612282 - MIR SINE MIR -130 78 16 2296 101 7 0 chr1 236582366 236582672 -45610992 + AluSx SINE Alu 3 310 -2 508 282 107 10 chr1 236582672 236582867 -45610797 + MIR SINE MIR 24 241 -21 486 296 81 31 chr1 236584837 236585060 -45608604 + HAL1b LINE L1 572 805 -543 2178 118 3 0 chr1 236585062 236585349 -45608315 + AluSx SINE Alu 3 290 -22 426 61 108 0 chr1 236585353 236585590 -45608074 + (TA)n Simple_repeat Simple_repeat 1 262 0 299 143 0 0 chr1 236585590 236585632 -45608032 + Alu SINE Alu 244 285 -16 315 223 98 60 chr1 236585642 236585826 -45607838 + L1MC5 LINE L1 7567 7757 -204 202 75 106 11 chr1 236585830 236585924 -45607740 + (TA)n Simple_repeat Simple_repeat 1 103 0 362 110 78 32 chr1 236585946 236586516 -45607148 + (TA)n Simple_repeat Simple_repeat 1 596 0 366 82 0 0 chr1 236586518 236586567 -45607097 - Alu SINE Alu -9 291 243 25 31 0 0 chr1 236586573 236586605 -45607059 + AT_rich Low_complexity Low_complexity 1 32 0 300 191 153 38 chr1 236586608 236586739 -45606925 + L1MCa LINE L1 1918 2063 -4363 267 252 131 9 chr1 236586748 236586855 -45606809 + HAL1b LINE L1 810 929 -419 285 128 0 0 chr1 236586884 236586931 -45606733 + (CA)n Simple_repeat Simple_repeat 2 48 0 1489 175 0 65 chr1 236587448 236587646 -45606018 - AluJo SINE Alu -14 298 126 216 0 0 0 chr1 236587646 236587670 -45605994 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1489 175 0 65 chr1 236587670 236587779 -45605885 - AluJo SINE Alu -186 126 11 216 0 0 0 chr1 236588307 236588331 -45605333 + (TG)n Simple_repeat Simple_repeat 2 25 0 539 279 41 78 chr1 236588913 236589157 -45604507 - MIR SINE MIR 0 262 28 208 352 45 23 chr1 236589941 236590029 -45603635 + MIR SINE MIR 59 148 -114 1188 135 19 9 chr1 236590034 236590249 -45603415 + L1MC1 LINE L1 5653 5869 -464 2907 141 16 20 chr1 236590286 236590782 -45602882 + L1MC1 LINE L1 5840 6333 0 1033 123 0 0 chr1 236590793 236590931 -45602733 + AluJb SINE Alu 1 138 -174 1042 160 77 0 chr1 236591799 236591980 -45601684 + AluJb SINE Alu 116 310 -2 272 292 167 16 chr1 236592205 236592510 -45601154 - L1ME4a LINE L1 -82 6039 5689 511 245 119 13 chr1 236593034 236593193 -45600471 - MIR SINE MIR 0 262 87 2073 80 3 55 chr1 236593816 236594105 -45599559 + AluY SINE Alu 25 298 -13 556 265 63 21 chr1 236594330 236594519 -45599145 - MIR SINE MIR -46 216 20 1550 210 101 37 chr1 236595453 236595510 -45598154 + MLT1C LTR MaLR 1 53 -414 1884 181 3 0 chr1 236595510 236595809 -45597855 + AluJo SINE Alu 1 300 -12 1550 210 101 37 chr1 236595809 236596179 -45597485 + MLT1C LTR MaLR 53 455 -12 1652 155 99 0 chr1 236596985 236597269 -45596395 + AluJb SINE Alu 1 312 0 431 18 18 0 chr1 236597720 236597776 -45595888 + (TG)n Simple_repeat Simple_repeat 1 57 0 387 254 154 47 chr1 236599133 236599302 -45594362 + MIR3 SINE MIR 18 204 -4 199 252 18 9 chr1 236599531 236599542 -45594122 - MIR SINE MIR -66 142 133 1357 160 26 4 chr1 236599542 236599773 -45593891 - MER46A DNA MER2_type 0 236 1 199 252 18 9 chr1 236599773 236599826 -45593838 - MIR SINE MIR -75 133 89 290 250 44 0 chr1 236599891 236599959 -45593705 + MIR SINE MIR 86 156 -106 525 327 50 64 chr1 236600881 236601178 -45592486 - L2 LINE L2 -1 3271 2979 414 322 74 13 chr1 236601193 236601342 -45592322 - L2 LINE L2 -1 3271 3114 958 195 78 10 chr1 236602045 236602250 -45591414 + MER20 DNA MER1_type 1 219 0 2213 122 0 3 chr1 236602931 236603226 -45590438 - AluSx SINE Alu -18 294 1 333 205 246 33 chr1 236603239 236603361 -45590303 - L1ME4a LINE L1 -73 6048 5901 2482 148 44 7 chr1 236604197 236604608 -45589056 + MSTB LTR MaLR 1 426 0 332 128 23 23 chr1 236604736 236604822 -45588842 + MER113 DNA MER1_type? 63 148 -373 1735 166 0 36 chr1 236604961 236605269 -45588395 + AluJo SINE Alu 1 297 -15 321 26 0 0 chr1 236605586 236605624 -45588040 + (TG)n Simple_repeat Simple_repeat 2 39 0 2105 135 0 0 chr1 236605786 236606083 -45587581 - AluSc SINE Alu -12 297 1 286 299 7 80 chr1 236606119 236606256 -45587408 + MIR SINE MIR 18 144 -118 314 284 73 0 chr1 236606386 236606495 -45587169 + L2 LINE L2 2720 2836 -478 1518 225 36 47 chr1 236607229 236607368 -45586296 - L1MEc LINE L1 -3556 2659 2520 1653 151 77 14 chr1 236607368 236607653 -45586011 - AluJo SINE Alu -1 311 9 1518 225 36 47 chr1 236607653 236607980 -45585684 - L1MEc LINE L1 -3695 2520 2198 587 27 27 0 chr1 236607985 236608058 -45585606 - AluY SINE Alu -13 299 225 2000 147 10 16 chr1 236608127 236608441 -45585223 - AluJb SINE Alu 0 312 1 559 203 6 51 chr1 236608442 236608619 -45585045 - L1MEc LINE L1 -4181 2215 2047 1699 165 113 0 chr1 236608621 236608949 -45584715 - MER47A DNA MER2_type -1 365 1 3845 263 108 50 chr1 236608949 236609019 -45584645 - L1MEc LINE L1 -4349 2047 1983 903 127 0 0 chr1 236609019 236609137 -45584527 + FLAM_C SINE Alu 1 118 -15 3845 263 108 50 chr1 236609137 236609262 -45584402 - L1MEc LINE L1 -4413 1983 1867 3666 107 25 4 chr1 236609262 236609778 -45583886 + MER1A DNA MER1_type 1 527 0 3845 263 108 50 chr1 236609778 236610216 -45583448 - L1MEc LINE L1 -4529 1867 1456 2320 179 34 2 chr1 236610216 236610629 -45583035 - MSTB LTR MaLR 0 426 1 3845 263 108 50 chr1 236610629 236610867 -45582797 - L1MEc LINE L1 -4940 1456 1233 2188 118 0 20 chr1 236610867 236611196 -45582468 - AluSx SINE Alu 0 312 1 3845 263 108 50 chr1 236611196 236611526 -45582138 - L1MEc LINE L1 -5163 1233 924 775 164 0 0 chr1 236611526 236611642 -45582022 - FLAM_C SINE Alu -17 116 1 3845 263 108 50 chr1 236611642 236612337 -45581327 - L1MEc LINE L1 -5472 924 36 190 234 43 0 chr1 236612339 236612386 -45581278 - MIR SINE MIR -36 226 178 243 209 121 55 chr1 236612400 236612491 -45581173 + L2 LINE L2 3198 3294 -19 209 250 103 15 chr1 236612527 236612595 -45581069 + MIR SINE MIR 41 114 -148 286 279 89 0 chr1 236612650 236612729 -45580935 + L2 LINE L2 3197 3282 -31 339 205 248 31 chr1 236614632 236614808 -45578856 + MIR SINE MIR 2 205 -57 288 309 43 86 chr1 236614845 236614952 -45578712 + L2 LINE L2 3139 3240 -32 2398 73 10 0 chr1 236614952 236615253 -45578411 + AluY SINE Alu 1 304 -7 288 309 43 86 chr1 236615253 236615284 -45578380 + L2 LINE L2 3240 3271 -1 215 307 70 53 chr1 236615360 236615474 -45578190 - L2 LINE L2 -589 2725 2610 264 254 17 0 chr1 236615883 236615942 -45577722 - MIR SINE MIR -119 89 30 205 352 48 16 chr1 236616151 236616276 -45577388 - L3b LINE CR1 -235 1348 1220 276 196 295 11 chr1 236616558 236616684 -45576980 + MIR SINE MIR 3 172 -63 212 301 172 0 chr1 236617905 236617998 -45575666 + MIR SINE MIR 111 219 -43 224 211 0 19 chr1 236618445 236618497 -45575167 + G-rich Low_complexity Low_complexity 4 54 0 960 197 11 17 chr1 236620636 236620814 -45572850 - MER5B DNA MER1_type 0 178 2 203 386 23 0 chr1 236622362 236622450 -45571214 - MIR SINE MIR -89 119 30 425 223 62 15 chr1 236622795 236622925 -45570739 - MIR3 SINE MIR -62 146 11 2382 86 16 22 chr1 236623276 236623591 -45570073 - AluSq SINE Alu 0 313 1 2267 71 39 3 chr1 236624274 236624556 -45569108 + AluY SINE Alu 1 292 -19 843 230 16 11 chr1 236624725 236624916 -45568748 - MLT1J2 LTR MaLR -258 192 1 444 303 62 11 chr1 236625149 236625327 -45568337 + MER5A DNA MER1_type 1 187 -2 345 312 46 0 chr1 236625417 236625526 -45568138 - MIR SINE MIR -79 129 16 203 297 115 33 chr1 236626590 236626772 -45566892 + L2 LINE L2 2210 2406 -908 246 264 118 14 chr1 236629138 236629266 -45564398 + MIR3 SINE MIR 33 171 -37 886 222 80 9 chr1 236629419 236629644 -45564020 - MIR SINE MIR -17 245 5 3207 119 40 13 chr1 236630699 236631253 -45562411 - LTR49 LTR ERV1 0 595 27 181 203 101 51 chr1 236631259 236631338 -45562326 + MIR3 SINE MIR 105 187 -21 4608 139 24 69 chr1 236631662 236631702 -45561962 - L1MB3 LINE L1 -2 6181 6141 2109 146 0 9 chr1 236631702 236632017 -45561647 - AluSx SINE Alu 0 312 1 4608 139 24 69 chr1 236632017 236632978 -45560686 - L1MB3 LINE L1 -42 6141 5227 231 307 53 0 chr1 236633117 236633192 -45560472 - L2 LINE L2 -61 3211 3133 338 237 103 0 chr1 236633840 236633937 -45559727 - L2 LINE L2 -7 3306 3200 482 216 27 0 chr1 236634106 236634217 -45559447 - MER81 DNA DNA 0 114 1 1240 163 33 44 chr1 236634247 236634517 -45559147 - ORSL DNA AcHobo -8 267 1 302 83 0 50 chr1 236634625 236634685 -45558979 + (ATG)n Simple_repeat Simple_repeat 3 59 0 304 244 67 22 chr1 236634690 236634780 -45558884 - MIR SINE MIR -5 257 164 403 129 0 0 chr1 236634808 236634870 -45558794 + AluJ/FLAM SINE Alu 7 68 -244 367 309 37 7 chr1 236634872 236635008 -45558656 - MIR SINE MIR -74 188 49 339 333 19 0 chr1 236635016 236635124 -45558540 - L2 LINE L2 -5 3267 3158 900 108 0 8 chr1 236635350 236635480 -45558184 + FLAM_C SINE Alu 2 130 -3 201 294 71 24 chr1 236635585 236635670 -45557994 + MIR SINE MIR 139 227 -35 1560 93 49 73 chr1 236636477 236636724 -45556940 - AluSg/x SINE Alu -6 306 66 422 250 0 18 chr1 236637307 236637419 -45556245 - MIR3 SINE MIR -14 194 85 2079 128 0 30 chr1 236638429 236638734 -45554930 - AluJo SINE Alu -16 296 1 760 166 133 0 chr1 236638734 236638885 -45554779 + MER58B DNA MER1_type 171 341 0 415 293 52 47 chr1 236638997 236639209 -45554455 - MIR SINE MIR -1 261 49 263 341 22 0 chr1 236639230 236639321 -45554343 - L2 LINE L2 -22 3250 3158 1823 147 14 14 chr1 236639564 236639857 -45553807 + AluJo SINE Alu 1 293 -19 270 0 0 0 chr1 236639857 236639887 -45553777 + (TG)n Simple_repeat Simple_repeat 2 31 0 536 267 17 33 chr1 236639924 236640104 -45553560 + MIR SINE MIR 86 262 0 809 220 11 6 chr1 236641241 236641418 -45552246 + MER5B DNA MER1_type 1 178 0 339 296 82 20 chr1 236642664 236642818 -45550846 + MIR SINE MIR 2 161 -63 2193 112 27 3 chr1 236642939 236643235 -45550429 + AluSx SINE Alu 1 303 -9 278 216 14 0 chr1 236643235 236643309 -45550355 + GA-rich Low_complexity Low_complexity 1 75 0 1684 154 73 18 chr1 236643561 236643847 -45549817 - AluJb SINE Alu -10 302 1 624 247 102 8 chr1 236644085 236644309 -45549355 - MIR SINE MIR -13 249 4 1942 139 13 17 chr1 236645105 236645407 -45548257 + AluJo SINE Alu 5 305 -7 279 311 159 0 chr1 236645955 236646087 -45547577 - MIR SINE MIR -21 241 89 543 240 0 33 chr1 236646364 236646514 -45547150 - MIR SINE MIR -23 239 95 2269 84 11 0 chr1 236646875 236647161 -45546503 + AluY SINE Alu 1 289 -22 451 284 154 48 chr1 236651004 236651335 -45542329 + L2 LINE L2 2888 3253 -19 319 247 157 51 chr1 236651421 236651599 -45542065 - L2 LINE L2 -1 3271 3075 265 273 273 11 chr1 236654810 236654986 -45538678 - L1MC5 LINE L1 -52 7909 7688 289 63 0 95 chr1 236656042 236656105 -45537559 + (CA)n Simple_repeat Simple_repeat 2 58 0 1238 66 174 0 chr1 236659924 236660120 -45533544 - MER30 DNA MER1_type 0 230 1 816 271 228 26 chr1 236660363 236660596 -45533068 - L2 LINE L2 -945 2369 2184 2189 99 13 29 chr1 236660596 236660909 -45532755 + AluSp SINE Alu 5 312 -1 816 271 228 26 chr1 236660909 236661553 -45532111 - L2 LINE L2 -1130 2184 1315 236 267 60 43 chr1 236861899 236861972 -45331692 - L2 LINE L2 -892 2422 2345 616 283 52 23 chr1 236861972 236862145 -45331519 - MER45A DNA AcHobo 0 178 1 236 267 60 43 chr1 236862145 236862187 -45331477 - L2 LINE L2 -969 2345 2305 603 194 7 35 chr1 236863390 236863408 -45330256 - MER3 DNA MER1_type -18 144 127 2238 112 7 0 chr1 236863408 236863704 -45329960 + AluSg SINE Alu 1 298 -12 603 194 7 35 chr1 236863704 236863829 -45329835 - MER3 DNA MER1_type -35 127 5 246 296 49 15 chr1 236863892 236864065 -45329599 - MIR SINE MIR -15 247 19 916 317 18 30 chr1 236864082 236864416 -45329248 - L3 LINE CR1 -685 892 563 469 274 30 7 chr1 236864686 236864821 -45328843 - MLT1G1 LTR MaLR -10 585 448 330 307 90 60 chr1 236864997 236865297 -45328367 + L2 LINE L2 2981 3289 -24 688 278 76 18 chr1 236865599 236865822 -45327842 - MIR SINE MIR -25 237 2 959 192 38 48 chr1 236867197 236867489 -45326175 + Charlie1 DNA MER1_type 2386 2674 -87 324 133 0 0 chr1 236867491 236867551 -45326113 + (TA)n Simple_repeat Simple_repeat 1 60 0 2197 68 103 0 chr1 236868108 236868389 -45325275 - AluSg SINE Alu 0 310 1 385 312 81 32 chr1 236868777 236868963 -45324701 + MIR3 SINE MIR 14 208 0 509 314 117 31 chr1 236869189 236869549 -45324115 - L2 LINE L2 -3 3310 2920 734 189 8 8 chr1 236869566 236869698 -45323966 + FLAM_A SINE Alu 2 133 0 299 333 54 57 chr1 236869698 236870034 -45323630 - L2 LINE L2 -384 2930 2596 2898 122 94 48 chr1 236870039 236870605 -45323059 - LTR14B LTR ERVK 0 608 17 202 363 6 70 chr1 236870605 236870762 -45322902 - L2 LINE L2 -717 2597 2451 282 325 0 0 chr1 236870998 236871078 -45322586 + MIR SINE MIR 180 259 -3 281 222 0 0 chr1 236872081 236872135 -45321529 + L2 LINE L2 3003 3056 -257 692 276 31 5 chr1 236872152 236872344 -45321320 + MIR SINE MIR 30 226 -36 314 264 24 102 chr1 236872358 236872525 -45321139 + L2 LINE L2 3113 3266 -6 2065 151 16 0 chr1 236872596 236872901 -45320763 - AluSx SINE Alu -2 310 1 2197 89 10 7 chr1 236872948 236873240 -45320424 + AluY SINE Alu 1 293 -18 269 278 157 26 chr1 236873852 236873967 -45319697 + MIR SINE MIR 17 146 -62 315 254 9 70 chr1 236874239 236874353 -45319311 - MIR SINE MIR -62 146 40 * 462 202 0 12 chr1 236874330 236874414 -45319250 - MIR SINE MIR -109 153 71 1916 112 31 14 chr1 236874448 236874734 -45318930 - AluSq SINE Alu -22 291 1 2266 285 28 23 chr1 236874866 236875618 -45318046 + ERVL LTR ERVL 4608 5363 -401 1614 232 199 23 chr1 236875957 236876532 -45317132 + LTR50 LTR ERVL 15 724 -71 1991 165 52 26 chr1 236876532 236876919 -45316745 + MLT2C1 LTR ERVL 1 397 0 1614 232 199 23 chr1 236876919 236877007 -45316657 + LTR50 LTR ERVL 724 795 0 814 215 10 29 chr1 236877238 236877443 -45316221 + AluSq SINE Alu 2 202 -111 273 299 140 0 chr1 236879446 236879553 -45314111 + MIR SINE MIR 131 252 -10 209 319 147 17 chr1 236880839 236880955 -45312709 + MIR SINE MIR 21 151 -57 672 104 21 0 chr1 236881831 236881927 -45311737 - L1PB3 LINE L1 0 6154 6057 208 321 25 25 chr1 236882489 236882570 -45311094 + L3b LINE CR1 1331 1411 -172 1641 127 45 0 chr1 236882606 236882873 -45310791 - L1PB3 LINE L1 -107 6047 5769 2317 211 119 17 chr1 236882889 236883551 -45310113 - L1PA8 LINE L1 -4 6168 5439 420 48 0 16 chr1 236883651 236883714 -45309950 - L1P5 LINE L1 -665 5489 5428 2401 100 0 0 chr1 236884750 236885051 -45308613 - AluSq SINE Alu -12 301 1 2181 117 0 3 chr1 236885912 236886203 -45307461 - AluSc SINE Alu -19 290 1 563 285 7 0 chr1 236886204 236886348 -45307316 - MIR SINE MIR -97 165 21 27 0 0 0 chr1 236887159 236887186 -45306478 + AT_rich Low_complexity Low_complexity 1 27 0 381 270 135 0 chr1 236887657 236887783 -45305881 + MIR SINE MIR 120 262 0 353 295 29 29 chr1 236889007 236889112 -45304552 - MIR3 SINE MIR -8 200 96 2039 204 74 21 chr1 236889335 236889375 -45304289 - MLT2B1 LTR ERVL -10 510 474 303 28 0 0 chr1 236889375 236889411 -45304253 + (TG)n Simple_repeat Simple_repeat 1 36 0 2039 204 74 21 chr1 236889411 236889854 -45303810 - MLT2B1 LTR ERVL -46 474 1 1886 158 81 3 chr1 236889941 236890264 -45303400 + MER7A DNA MER2_type 1 346 0 578 104 0 0 chr1 236890788 236890865 -45302799 - AluY SINE Alu -102 209 133 2659 49 3 0 chr1 236890866 236891171 -45302493 - AluY SINE Alu -4 307 2 231 36 0 0 chr1 236891183 236891211 -45302453 + (T)n Simple_repeat Simple_repeat 1 28 0 2673 46 0 0 chr1 236891211 236891537 -45302127 - LTR17 LTR ERV1 -454 326 1 500 48 0 0 chr1 236891537 236891599 -45302065 - HERV17 LTR ERV1 0 8626 8565 243 0 0 0 chr1 236891667 236891694 -45301970 + (CA)n Simple_repeat Simple_repeat 1 27 0 2367 75 0 39 chr1 236892770 236893078 -45300586 + AluY SINE Alu 1 296 -15 201 425 50 7 chr1 236893348 236893489 -45300175 - L2 LINE L2 -24 3248 3102 246 248 70 54 chr1 236894173 236894302 -45299362 - MIR SINE MIR -97 165 35 405 0 0 0 chr1 236894482 236894527 -45299137 + (CA)n Simple_repeat Simple_repeat 2 46 0 186 328 16 16 chr1 236894685 236894746 -45298918 - L3 LINE CR1 -8 1569 1509 321 298 157 0 chr1 236894799 236894920 -45298744 + MIR SINE MIR 83 222 -40 406 244 57 3 chr1 236895077 236895212 -45298452 - MIR3 SINE MIR -14 194 47 22 0 0 0 chr1 236896592 236896614 -45297050 + AT_rich Low_complexity Low_complexity 1 22 0 190 167 56 56 chr1 236896666 236896720 -45296944 - L3b LINE CR1 -244 1339 1286 186 325 24 0 chr1 236897983 236898066 -45295598 + MIR SINE MIR 36 120 -88 26 30 0 0 chr1 236900061 236900094 -45293570 + AT_rich Low_complexity Low_complexity 1 33 0 2473 92 0 0 chr1 236900465 236900769 -45292895 + AluSx SINE Alu 1 304 -8 2202 114 7 3 chr1 236901223 236901531 -45292133 - AluSx SINE Alu -3 309 1 590 74 53 21 chr1 236902185 236902280 -45291384 + MER4A LTR ERV1 1 98 -566 1782 110 8 62 chr1 236902280 236902645 -45291019 + MER4A LTR ERV1 261 664 0 470 294 38 6 chr1 236903163 236903323 -45290341 - MIR SINE MIR -31 231 67 428 223 0 19 chr1 236903433 236903536 -45290128 - L1 LINE L1 -3175 2971 2871 466 168 116 11 chr1 236903613 236903708 -45289956 - MLT1F1 LTR MaLR 0 567 463 306 248 248 24 chr1 236904237 236904362 -45289302 - MIR3 SINE MIR -32 176 24 561 141 20 40 chr1 236904480 236904579 -45289085 - FAM SINE Alu -6 179 83 307 241 117 35 chr1 236904812 236904957 -45288707 + MER69A DNA AcHobo 10 166 -11 482 217 124 0 chr1 236906476 236906605 -45287059 - L2 LINE L2 -4 3309 3165 236 282 77 13 chr1 236906850 236906928 -45286736 - L2 LINE L2 -218 3054 2972 241 250 12 71 chr1 236908129 236908213 -45285451 + L2 LINE L2 3189 3267 -5 201 194 208 56 chr1 236908495 236908567 -45285097 - MIR SINE MIR -71 137 55 574 319 64 0 chr1 236908726 236908914 -45284750 - MIR SINE MIR -24 238 39 189 355 97 32 chr1 236910114 236910269 -45283395 - MER5A DNA MER1_type -1 188 24 295 339 59 0 chr1 236910584 236910702 -45282962 + L3 LINE CR1 1447 1571 -6 183 270 16 32 chr1 236910648 236910711 -45282953 + MIR3 SINE MIR 145 206 -2 * 364 263 52 70 chr1 236911924 236912137 -45281527 + L1MEd LINE L1 978 1186 -4933 1072 285 175 37 chr1 236912175 236912683 -45280981 - MLT1K LTR MaLR 0 588 11 352 310 0 35 chr1 236912779 236912921 -45280743 + HAL1b LINE L1 393 529 -819 734 309 78 40 chr1 236913013 236913264 -45280400 + L2 LINE L2 2496 2736 -577 2780 89 11 8 chr1 236913264 236913636 -45280028 - THE1C LTR MaLR -1 374 2 734 309 78 40 chr1 236913636 236914162 -45279502 + L2 LINE L2 2736 3308 -5 2085 148 3 0 chr1 236914394 236914704 -45278960 + AluSx SINE Alu 1 311 -1 303 28 0 0 chr1 236914835 236914871 -45278793 + (TG)n Simple_repeat Simple_repeat 1 36 0 235 282 82 11 chr1 236915517 236915639 -45278025 + MIR SINE MIR 38 168 -40 1432 337 55 44 chr1 236916283 236917053 -45276611 + ERVL LTR ERVL 814 1574 -4190 2306 145 69 17 chr1 236917053 236917460 -45276204 + MSTB1 LTR MaLR 5 432 0 1432 337 55 44 chr1 236917460 236917613 -45276051 + ERVL LTR ERVL 1574 1751 -4013 1526 86 0 5 chr1 236917613 236917811 -45275853 + AluY SINE Alu 106 302 -9 1432 337 55 44 chr1 236917811 236917894 -45275770 + ERVL LTR ERVL 1751 1832 -3932 1086 146 0 0 chr1 236918039 236918190 -45275474 + AluSg/x SINE Alu 129 279 -33 324 0 0 0 chr1 236918190 236918226 -45275438 + (CA)n Simple_repeat Simple_repeat 1 36 0 1039 272 143 32 chr1 236918418 236918897 -45274767 - MLT1G1 LTR MaLR -18 577 1 2673 230 77 41 chr1 236919203 236919324 -45274340 + L1MEd LINE L1 1364 1479 -4831 1114 176 55 0 chr1 236919324 236919523 -45274141 + MER6B DNA MER2_type 1 210 0 261 0 0 0 chr1 236919528 236919557 -45274107 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2673 230 77 41 chr1 236919557 236920363 -45273301 + L1MEd LINE L1 1482 2331 -3979 249 263 30 20 chr1 236920646 236920745 -45272919 + MER72 LTR ERV1 377 476 -246 565 185 48 41 chr1 236920842 236920988 -45272676 + LTR45B LTR ERV1 343 489 0 1570 204 24 38 chr1 236921077 236921257 -45272407 + L1MEd LINE L1 2355 2536 -3593 2234 118 0 7 chr1 236921257 236921563 -45272101 - AluSx SINE Alu -8 304 1 1570 204 24 38 chr1 236921563 236921776 -45271888 + L1MEd LINE L1 2536 2725 -3404 1419 220 14 57 chr1 236921767 236922186 -45271478 + L1ME1 LINE L1 5719 6119 -47 * 2376 88 0 0 chr1 236922280 236922597 -45271067 - AluSg SINE Alu 0 330 14 477 171 12 0 chr1 236922610 236922692 -45270972 - FLAM_A SINE Alu -14 128 46 316 177 0 16 chr1 236922724 236922786 -45270878 - MER3 DNA MER1_type -3 206 146 374 223 155 0 chr1 236923687 236923790 -45269874 - L2 LINE L2 -1 3312 3194 287 295 0 13 chr1 236924740 236924818 -45268846 + MIR3 SINE MIR 14 90 -118 837 165 213 8 chr1 236924984 236925233 -45268431 + MER69 DNA AcHobo 2160 2459 -67 2402 43 7 3 chr1 236925260 236925584 -45268080 + AluY SINE Alu 1 325 0 293 152 15 45 chr1 236925589 236925655 -45268009 + MIR3 SINE MIR 110 173 -35 430 346 22 13 chr1 236925668 236925896 -45267768 + MIR SINE MIR 31 260 -2 793 174 94 0 chr1 236926250 236926399 -45267265 + MER41D LTR ERV1 395 557 0 663 119 86 0 chr1 236926535 236926686 -45266978 + MER69 DNA AcHobo 2296 2459 -67 1408 171 0 57 chr1 236926701 236926999 -45266665 - AluJo SINE Alu -31 281 1 392 133 0 0 chr1 236927053 236927113 -45266551 + MER53 DNA DNA 6 65 -124 218 256 0 0 chr1 236927216 236927259 -45266405 + G-rich Low_complexity Low_complexity 2 44 0 191 341 110 17 chr1 236927972 236928145 -45265519 + MIR3 SINE MIR 3 191 -17 205 288 0 0 chr1 236928181 236928240 -45265424 + A-rich Low_complexity Low_complexity 1 59 0 2207 85 7 0 chr1 236928446 236928728 -45264936 - AluY SINE Alu -27 284 1 373 220 96 72 chr1 236929438 236929647 -45264017 - MIR SINE MIR -1 261 48 1453 145 24 25 chr1 236930949 236931393 -45262271 - LTR54 LTR ERV1 0 510 3 485 235 144 13 chr1 236932765 236932918 -45260746 + MIR SINE MIR 90 262 0 204 118 0 29 chr1 236934281 236934315 -45259349 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 1565 191 13 13 chr1 236935421 236935719 -45257945 + AluJo SINE Alu 1 298 -14 229 299 136 14 chr1 236935904 236936051 -45257613 - L2 LINE L2 -556 2758 2594 391 257 147 0 chr1 236936350 236936486 -45257178 - MIR3 SINE MIR -2 206 51 554 74 0 12 chr1 236936580 236936661 -45257003 + (TTCCC)n Simple_repeat Simple_repeat 3 82 0 201 356 85 34 chr1 236937258 236937435 -45256229 + L3 LINE CR1 1331 1516 -61 372 185 0 43 chr1 236938307 236938399 -45255265 + MIR SINE MIR 41 128 -80 22 35 0 0 chr1 236938498 236938527 -45255137 + AT_rich Low_complexity Low_complexity 1 29 0 289 282 146 0 chr1 236938527 236938630 -45255034 - L2 LINE L2 -7 3265 3148 240 307 13 0 chr1 236939428 236939503 -45254161 - MER5A DNA MER1_type -80 109 34 583 301 44 9 chr1 236939579 236939808 -45253856 - MIR SINE MIR -3 259 23 454 242 55 0 chr1 236939827 236939955 -45253709 + MIR3 SINE MIR 12 146 -62 255 319 64 64 chr1 236940950 236941154 -45252510 + L2 LINE L2 2742 2944 -369 308 304 57 16 chr1 236941359 236941579 -45252085 + L2 LINE L2 2958 3241 -72 199 156 15 230 chr1 236941638 236941773 -45251891 - MIR SINE MIR 0 262 157 437 222 10 0 chr1 236941844 236941943 -45251721 - MIR SINE MIR -133 129 30 290 339 87 45 chr1 236941957 236942085 -45251579 - MIR SINE MIR -1 261 140 1978 111 0 0 chr1 236942085 236942347 -45251317 + AluSg SINE Alu 34 295 -15 290 339 87 45 chr1 236942347 236942460 -45251204 - MIR SINE MIR -122 140 10 288 53 0 0 chr1 236942775 236942813 -45250851 + (TG)n Simple_repeat Simple_repeat 2 39 0 291 301 28 28 chr1 236942990 236943183 -45250481 - MIR SINE MIR -50 212 20 21231 145 24 38 chr1 236943500 236945742 -45247922 + L1M1 LINE L1 159 2430 -5135 2382 70 10 19 chr1 236945742 236946056 -45247608 - AluY SINE Alu 0 311 1 21231 145 24 38 chr1 236946056 236948792 -45244872 + L1M1 LINE L1 2430 5073 -2492 942 166 23 0 chr1 236948799 236948974 -45244690 + L1MA2 LINE L1 4127 4305 -3260 236 184 20 0 chr1 236948965 236949014 -45244650 + L1MA2 LINE L1 4733 4782 -2783 * 9610 147 11 1 chr1 236949018 236951634 -45242030 + L1MA2 LINE L1 5081 7723 0 183 313 31 0 chr1 236952004 236952068 -45241596 + L2 LINE L2 3226 3291 -22 2317 97 0 16 chr1 236952290 236952599 -45241065 - AluSx SINE Alu -8 304 1 2126 114 20 32 chr1 236952621 236952962 -45240702 - MER1B DNA MER1_type 0 337 1 512 238 48 8 chr1 236953235 236953361 -45240303 + MIR SINE MIR 111 241 -21 187 186 17 85 chr1 236953606 236953665 -45239999 + L2 LINE L2 3218 3272 0 1166 204 10 0 chr1 236954355 236954561 -45239103 + AluJo SINE Alu 75 282 -30 2142 179 33 14 chr1 236955225 236955645 -45238019 - Charlie4a DNA MER1_type -7 501 74 2108 137 0 7 chr1 236955856 236956162 -45237502 + AluSx SINE Alu 1 304 -8 365 308 119 13 chr1 236957135 236957294 -45236370 - MIR3 SINE MIR 0 208 33 364 301 108 77 chr1 236957389 236957777 -45235887 + L2 LINE L2 2870 3269 -3 216 204 0 0 chr1 236957819 236957863 -45235801 + (TA)n Simple_repeat Simple_repeat 1 44 0 267 244 41 89 chr1 236957900 236958023 -45235641 - MIR SINE MIR -62 146 30 478 271 15 34 chr1 236958162 236958341 -45235323 + MIR3 SINE MIR 17 197 -11 198 231 115 39 chr1 236958504 236958582 -45235082 - L2 LINE L2 0 3272 3189 1680 159 30 20 chr1 236958841 236959137 -45234527 + AluJb SINE Alu 3 301 -11 2036 81 4 8 chr1 236959189 236959450 -45234214 + AluY SINE Alu 39 298 -13 436 297 36 0 chr1 236959859 236960021 -45233643 - MIR3 SINE MIR -4 204 30 237 351 40 0 chr1 236960994 236961068 -45232596 + L2 LINE L2 3188 3264 -8 292 249 73 37 chr1 236961110 236961282 -45232382 - MIR SINE MIR -17 245 70 213 289 0 0 chr1 236961541 236961586 -45232078 + L2 LINE L2 3210 3254 -18 224 182 0 18 chr1 236961626 236961681 -45231983 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 1013 191 150 24 chr1 236961854 236962148 -45231516 + MER96B DNA MER1_type? 85 415 -2 311 291 162 73 chr1 236965046 236965348 -45228316 + L2 LINE L2 2906 3234 -38 243 125 0 0 chr1 236965391 236965431 -45228233 + (CA)n Simple_repeat Simple_repeat 2 41 0 227 304 88 39 chr1 236965495 236965597 -45228067 + MIR3 SINE MIR 101 207 -1 253 143 0 48 chr1 236966039 236966102 -45227562 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 447 154 54 54 chr1 236967230 236967379 -45226285 - L1ME4a LINE L1 -7 6114 5966 334 275 67 33 chr1 236967381 236967501 -45226163 + MIR SINE MIR 49 172 -90 1344 164 157 4 chr1 236967901 236968163 -45225501 - AluJb SINE Alu 0 302 1 632 265 31 89 chr1 236968489 236968746 -45224918 - MIR SINE MIR -1 261 20 291 235 201 34 chr1 236968828 236969010 -45224654 + MIR SINE MIR 44 252 -10 * 655 286 69 16 chr1 236968961 236969206 -45224458 - MIR SINE MIR -3 259 2 276 238 9 86 chr1 236969468 236969527 -45224137 + MIR3 SINE MIR 77 126 -82 2958 148 48 15 chr1 236969527 236970068 -45223596 + MER89 LTR ERV1 1 559 0 276 238 9 86 chr1 236970068 236970113 -45223551 + MIR3 SINE MIR 126 173 -35 443 254 109 81 chr1 236970126 236970410 -45223254 - LTR67 LTR ERVL -264 293 2 318 276 40 59 chr1 236971054 236971206 -45222458 - MIR3 SINE MIR -14 194 46 801 174 8 0 chr1 236971208 236971340 -45222324 + AluJ SINE Alu 1 133 -169 502 218 64 0 chr1 236971355 236971465 -45222199 + AluJ SINE Alu 185 301 -11 286 209 118 9 chr1 236971499 236971609 -45222055 + L1ME LINE L1 4137 4258 -1888 1419 204 28 0 chr1 236971620 236971905 -45221759 + AluJb SINE Alu 6 298 -14 2226 234 31 19 chr1 236971906 236972586 -45221078 + L1ME LINE L1 4261 4948 -1198 277 71 0 83 chr1 236972594 236972678 -45220986 + (CAAAAA)n Simple_repeat Simple_repeat 3 79 0 1973 198 69 53 chr1 236972680 236973477 -45220187 + L1ME LINE L1 4954 5775 -391 626 211 0 0 chr1 236973480 236973613 -45220051 + L1MA10 LINE L1 6199 6331 -3 22 0 0 0 chr1 236973923 236973945 -45219719 + AT_rich Low_complexity Low_complexity 1 22 0 1501 163 51 7 chr1 236974493 236974787 -45218877 + AluSq SINE Alu 1 307 -6 230 114 136 23 chr1 236975187 236975231 -45218433 + LTR8 LTR ERV1 1 49 -642 2498 226 19 78 chr1 236975234 236975952 -45217712 + LTR8 LTR ERV1 16 691 0 575 273 104 58 chr1 236976240 236976987 -45216677 + L1MEc LINE L1 860 1641 -4755 1839 212 66 45 chr1 236977056 236977318 -45216346 - MLT2B1 LTR ERVL 0 464 199 1741 179 0 10 chr1 236977318 236977631 -45216033 - AluJb SINE Alu -2 310 1 1839 212 66 45 chr1 236977631 236977835 -45215829 - MLT2B1 LTR ERVL -265 199 1 4187 162 64 56 chr1 236977838 236978193 -45215471 + L1MB7 LINE L1 4641 4992 -1192 1927 153 3 3 chr1 236978193 236978500 -45215164 + AluJb SINE Alu 1 307 -5 4187 162 64 56 chr1 236978500 236978661 -45215003 + L1MB7 LINE L1 4992 5150 -1034 1802 143 7 42 chr1 236978661 236978969 -45214695 + AluSx SINE Alu 1 297 -15 4187 162 64 56 chr1 236978969 236979043 -45214621 + L1MB7 LINE L1 5150 5222 -962 2294 140 60 29 chr1 236979043 236979416 -45214248 + MSTA LTR MaLR 1 390 -38 2320 61 3 3 chr1 236979416 236979712 -45213952 - AluY SINE Alu -15 296 1 2294 140 60 29 chr1 236979712 236979753 -45213911 + MSTA LTR MaLR 390 428 0 4187 162 64 56 chr1 236979753 236980703 -45212961 + L1MB7 LINE L1 5222 6184 0 22 99 0 0 chr1 236981158 236981229 -45212435 + AT_rich Low_complexity Low_complexity 1 71 0 579 165 83 9 chr1 236981229 236981338 -45212326 - FLAM_C SINE Alu -15 118 2 802 243 25 87 chr1 236981341 236981617 -45212047 - MIR SINE MIR -2 260 2 423 300 28 39 chr1 236981636 236981816 -45211848 + MIR SINE MIR 34 211 -51 212 135 0 19 chr1 236983123 236983175 -45210489 + (TG)n Simple_repeat Simple_repeat 1 51 0 390 206 0 0 chr1 236983242 236983305 -45210359 + MER1A DNA MER1_type 2 64 -463 2206 99 0 10 chr1 236983306 236983620 -45210044 + AluY SINE Alu 1 311 0 207 156 0 0 chr1 236983620 236983652 -45210012 + GA-rich Low_complexity Low_complexity 4 35 0 3378 123 11 11 chr1 236983652 236984130 -45209534 + MER1A DNA MER1_type 52 529 0 198 109 127 91 chr1 236984545 236984564 -45209100 - L3 LINE CR1 -75 1502 1485 956 302 24 29 chr1 236984564 236984975 -45208689 - MLT1I LTR MaLR 0 409 1 198 109 127 91 chr1 236984975 236985010 -45208654 - L3 LINE CR1 -92 1485 1446 200 119 0 48 chr1 236985526 236985568 -45208096 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 306 251 144 36 chr1 236985890 236986085 -45207579 - L1ME4a LINE L1 -42 6079 5864 246 299 136 20 chr1 236986520 236986667 -45206997 - MIR3 SINE MIR -25 183 20 3203 217 60 22 chr1 236986980 236987545 -45206119 - MER21B LTR ERV1 -69 794 193 219 69 0 0 chr1 236987545 236987574 -45206090 + (GGGTG)n Simple_repeat Simple_repeat 1 29 0 3203 217 60 22 chr1 236987574 236987741 -45205923 - MER21B LTR ERV1 -670 193 34 313 264 203 41 chr1 236987768 236987965 -45205699 - L2 LINE L2 0 3272 3044 1523 154 110 51 chr1 236988060 236988565 -45205099 + Tigger7 DNA MER2_type 1 2487 0 283 354 0 10 chr1 236989210 236989309 -45204355 + L2 LINE L2 2964 3061 -211 2596 141 55 0 chr1 236989384 236989788 -45203876 - MSTC LTR MaLR 0 428 3 1040 202 33 67 chr1 236989881 236990217 -45203447 - L1MB7 LINE L1 -1 6183 5852 504 303 31 12 chr1 236990267 236990429 -45203235 + MIR SINE MIR 3 167 -95 968 170 55 0 chr1 236991560 236991725 -45201939 - MER20 DNA MER1_type 0 219 46 427 203 136 130 chr1 236991889 236991994 -45201670 - MER5A DNA MER1_type -3 186 78 1802 161 7 3 chr1 236991994 236992292 -45201372 - AluJb SINE Alu -13 299 1 427 203 136 130 chr1 236992292 236992363 -45201301 - MER5A DNA MER1_type -111 78 9 214 269 269 10 chr1 236992403 236992507 -45201157 - MIR SINE MIR -117 145 15 1148 213 105 45 chr1 236993329 236993643 -45200021 - MER58B DNA MER1_type -8 333 1 241 143 0 0 chr1 236993670 236993712 -45199952 + MER103 DNA DNA 8 49 -117 388 311 37 22 chr1 236994411 236994546 -45199118 - MIR SINE MIR -123 139 3 1820 133 6 44 chr1 236995110 236995426 -45198238 + AluSx SINE Alu 1 304 -8 330 224 0 0 chr1 236995665 236995750 -45197914 + GA-rich Low_complexity Low_complexity 4 88 0 247 206 55 55 chr1 236996879 236996952 -45196712 - MIR SINE MIR -80 182 110 386 319 32 38 chr1 236998420 236998605 -45195059 + MIR3 SINE MIR 9 192 -16 553 272 30 6 chr1 236998898 236999067 -45194597 + MIR SINE MIR 23 195 -67 189 0 0 0 chr1 236999633 236999654 -45194010 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 201 327 44 53 chr1 237000583 237000696 -45192968 + L2 LINE L2 3193 3304 -9 183 222 0 0 chr1 237000874 237000910 -45192754 + L2 LINE L2 3263 3298 -15 183 277 106 0 chr1 237003048 237003095 -45190569 + L2 LINE L2 3212 3263 -9 202 145 0 97 chr1 237003192 237003254 -45190410 + (GAAAA)n Simple_repeat Simple_repeat 5 60 0 208 280 100 0 chr1 237004214 237004264 -45189400 - L2 LINE L2 -9 3263 3209 223 277 0 0 chr1 237004290 237004355 -45189309 + G-rich Low_complexity Low_complexity 1 65 0 502 317 86 26 chr1 237004774 237005159 -45188505 + MLT1J LTR MaLR 70 477 -34 22 35 0 0 chr1 237006309 237006338 -45187326 + AT_rich Low_complexity Low_complexity 1 29 0 343 281 217 21 chr1 237006558 237006793 -45186871 - L3 LINE CR1 -72 1505 1225 201 211 18 35 chr1 237008146 237008203 -45185461 + C-rich Low_complexity Low_complexity 4 59 0 556 314 64 0 chr1 237009076 237009248 -45184416 + MIR SINE MIR 31 213 -49 257 327 50 69 chr1 237009483 237009642 -45184022 + L2 LINE L2 3107 3262 -10 532 127 64 9 chr1 237009903 237010013 -45183651 - Charlie5 DNA MER1_type -27 2585 2470 313 209 15 0 chr1 237010722 237010789 -45182875 + L2 LINE L2 3020 3087 -185 317 329 30 0 chr1 237012704 237012868 -45180796 + (CCCCAG)n Simple_repeat Simple_repeat 5 173 0 686 139 16 0 chr1 237012887 237013009 -45180655 + CT-rich Low_complexity Low_complexity 1 124 0 1878 155 34 3 chr1 237013009 237013305 -45180359 - AluJb SINE Alu -7 305 1 236 369 21 7 chr1 237013322 237013463 -45180201 + (CCCCAG)n Simple_repeat Simple_repeat 1 143 0 194 261 0 0 chr1 237013682 237013728 -45179936 - L2 LINE L2 0 3272 3227 228 185 0 46 chr1 237013890 237013955 -45179709 - L2 LINE L2 -218 3054 2993 256 385 0 23 chr1 237015340 237015470 -45178194 - MER5A DNA MER1_type -18 171 45 1399 298 99 32 chr1 237016010 237016204 -45177460 + L2 LINE L2 1500 1680 -1634 1652 191 31 0 chr1 237016204 237016498 -45177166 - AluJb SINE Alu -9 303 1 1399 298 99 32 chr1 237016498 237017195 -45176469 + L2 LINE L2 1680 2450 -864 336 24 0 0 chr1 237017231 237017272 -45176392 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr1 237017293 237017315 -45176349 + (TATG)n Simple_repeat Simple_repeat 2 23 0 733 221 7 0 chr1 237017451 237017600 -45176064 - Zaphod DNA AcHobo -1 4030 3881 582 313 117 38 chr1 237017651 237017898 -45175766 - MER115 DNA AcHobo -266 427 144 2112 129 0 3 chr1 237017898 237018185 -45175479 + AluJb SINE Alu 5 290 -22 582 313 117 38 chr1 237018185 237018279 -45175385 - MER115 DNA AcHobo -549 144 59 322 280 120 35 chr1 237018679 237018753 -45174911 - L2 LINE L2 -213 3059 2993 2325 107 0 0 chr1 237018753 237019052 -45174612 + AluSx SINE Alu 1 299 -13 322 280 120 35 chr1 237019052 237019314 -45174350 - L2 LINE L2 -279 2993 2685 1716 183 0 0 chr1 237019899 237020167 -45173497 + AluJo SINE Alu 1 268 -44 343 308 9 19 chr1 237021001 237021108 -45172556 + MIR3 SINE MIR 77 182 -26 257 308 107 41 chr1 237021407 237021576 -45172088 + MIR SINE MIR 37 216 -46 442 199 33 39 chr1 237022185 237022409 -45171255 + (TG)n Simple_repeat Simple_repeat 1 222 0 422 165 26 33 chr1 237022420 237023160 -45170504 + (TG)n Simple_repeat Simple_repeat 1 735 0 383 171 23 17 chr1 237023178 237023354 -45170310 + (TG)n Simple_repeat Simple_repeat 1 177 0 467 159 32 17 chr1 237023388 237023744 -45169920 + (TG)n Simple_repeat Simple_repeat 1 361 0 482 136 31 12 chr1 237023764 237023926 -45169738 + (TG)n Simple_repeat Simple_repeat 1 165 0 2417 75 7 0 chr1 237025087 237025379 -45168285 - AluSc SINE Alu -15 294 1 801 134 8 15 chr1 237026030 237026191 -45167473 + FLAM_C SINE Alu 1 160 0 1980 149 13 7 chr1 237027313 237027622 -45166042 + AluJb SINE Alu 1 311 -1 1910 153 3 38 chr1 237028115 237028429 -45165235 + AluSx SINE Alu 1 303 -9 2587 59 0 0 chr1 237028431 237028736 -45164928 + AluY SINE Alu 1 305 -6 213 237 17 17 chr1 237029052 237029111 -45164553 + GA-rich Low_complexity Low_complexity 2 60 0 183 42 0 0 chr1 237030050 237030074 -45163590 + (CAA)n Simple_repeat Simple_repeat 2 25 0 181 315 55 0 chr1 237030552 237030625 -45163039 - L3b LINE CR1 -168 1415 1339 334 276 98 11 chr1 237031209 237031380 -45162284 - MIR SINE MIR -70 192 11 2028 147 27 0 chr1 237033034 237033327 -45160337 - AluSx SINE Alu -11 301 1 1069 167 0 0 chr1 237034025 237034187 -45159477 - FRAM SINE Alu -13 163 2 242 295 97 78 chr1 237037059 237037317 -45156347 + L2 LINE L2 3010 3272 0 * 447 296 143 5 chr1 237037314 237037530 -45156134 + L3 LINE CR1 1329 1574 -3 1922 139 36 7 chr1 237038881 237039183 -45154481 - AluSx SINE Alu -1 311 1 212 329 47 32 chr1 237039235 237039410 -45154254 - MIR SINE MIR -31 177 34 272 315 49 27 chr1 237039903 237040087 -45153577 + L2 LINE L2 3123 3310 -3 527 264 37 82 chr1 237040253 237040522 -45153142 - MIR SINE MIR -5 257 1 364 305 73 18 chr1 237042310 237042474 -45151190 - MIR SINE MIR -10 252 80 622 301 75 5 chr1 237043020 237043219 -45150445 - MIR SINE MIR -46 216 4 2291 123 0 0 chr1 237043358 237043660 -45150004 + AluSg SINE Alu 1 302 -8 566 271 30 18 chr1 237045040 237045206 -45148458 - MIR SINE MIR -50 212 45 270 238 138 0 chr1 237045854 237045934 -45147730 + MIR SINE MIR 64 154 -108 2046 101 20 3 chr1 237046761 237047067 -45146597 - L1PA10 LINE L1 -1 6167 5857 246 62 0 0 chr1 237048356 237048388 -45145276 + (CA)n Simple_repeat Simple_repeat 2 33 0 237 308 38 31 chr1 237048470 237048601 -45145063 + MIR SINE MIR 35 165 -69 292 349 40 7 chr1 237048817 237048969 -45144695 + MIR3 SINE MIR 43 199 -9 1440 221 120 43 chr1 237048981 237049447 -45144217 - MLT1D LTR MaLR -1 504 3 439 319 176 0 chr1 237049601 237049759 -45143905 + MIR SINE MIR 4 207 -55 1867 152 7 20 chr1 237049759 237050062 -45143602 + AluJo SINE Alu 1 299 -13 439 319 176 0 chr1 237050062 237050107 -45143557 + MIR SINE MIR 207 243 -19 288 289 33 0 chr1 237050258 237050348 -45143316 - MIR SINE MIR -74 134 42 1978 137 13 19 chr1 237051867 237052181 -45141483 + AluSx SINE Alu 1 312 0 180 243 0 0 chr1 237052594 237052631 -45141033 + MIR SINE MIR 112 148 -114 736 180 0 0 chr1 237053094 237053233 -45140431 - FLAM_C SINE Alu -4 139 1 423 119 0 0 chr1 237054055 237054122 -45139542 + (GA)n Simple_repeat Simple_repeat 2 68 0 402 234 64 63 chr1 237054239 237054399 -45139265 + MIR SINE MIR 65 225 -37 1148 196 14 0 chr1 237055207 237055426 -45138238 + MER58A DNA MER1_type 1 222 -2 284 250 87 0 chr1 237055567 237055659 -45138005 - MER103 DNA DNA -58 108 9 397 271 33 112 chr1 237056129 237056343 -45137321 + MIR3 SINE MIR 8 204 -4 193 282 118 9 chr1 237057142 237057252 -45136412 - L2 LINE L2 -13 3300 3179 233 336 71 9 chr1 237057361 237057474 -45136190 - L3b LINE CR1 -94 1489 1370 2027 150 23 0 chr1 237058371 237058671 -45134993 + AluSx SINE Alu 5 311 -1 409 330 39 11 chr1 237058994 237059176 -45134488 - MIR3 SINE MIR -15 193 7 186 337 111 12 chr1 237059209 237059381 -45134283 + MIR3 SINE MIR 19 207 -1 2308 170 54 2 chr1 237063548 237063953 -45129711 + MSTB LTR MaLR 1 426 0 887 188 79 0 chr1 237063963 237064128 -45129536 - MER45A DNA AcHobo 0 178 1 2302 102 0 0 chr1 237065546 237065849 -45127815 - AluSg SINE Alu -7 303 1 181 295 82 0 chr1 237065943 237066004 -45127660 - L2 LINE L2 0 3313 3248 2113 121 17 3 chr1 237067222 237067519 -45126145 + AluSg SINE Alu 1 301 -9 339 286 24 8 chr1 237067835 237067961 -45125703 + GA-rich Low_complexity Low_complexity 4 131 0 280 91 0 45 chr1 237067961 237068005 -45125659 - Charlie3 DNA MER1_type -190 2520 2479 276 200 0 118 chr1 237070541 237070626 -45123038 + MER91 DNA MER1_type 66 140 0 540 323 35 31 chr1 237070724 237070978 -45122686 + MIR SINE MIR 2 256 -6 231 36 0 0 chr1 237071082 237071110 -45122554 + (TCCC)n Simple_repeat Simple_repeat 4 31 0 884 326 14 36 chr1 237072501 237072918 -45120746 - HERV16 LTR ERVL -1296 4358 3951 3231 285 53 25 chr1 237072958 237075185 -45118479 - HERV16 LTR ERVL -1889 3875 1313 2317 105 0 13 chr1 237075185 237075490 -45118174 + AluSx SINE Alu 1 301 -11 3231 285 53 25 chr1 237075490 237076282 -45117382 - HERV16 LTR ERVL -4451 1313 545 669 317 73 17 chr1 237077114 237077414 -45116250 - L3 LINE CR1 -7 1570 1254 2505 134 20 2 chr1 237077440 237077836 -45115828 + MER57A LTR ERV1 1 403 0 268 319 0 11 chr1 237077946 237078037 -45115627 - MIR SINE MIR -70 192 103 331 316 97 0 chr1 237078344 237078458 -45115206 - L2 LINE L2 -14 3258 3134 342 250 104 49 chr1 237078931 237079095 -45114569 - MIR SINE MIR -31 231 59 345 215 111 56 chr1 237079251 237079563 -45114101 - MLT1J2 LTR MaLR -17 426 71 2277 225 72 17 chr1 237080001 237080544 -45113120 + MLT1E LTR MaLR 21 593 0 1932 173 98 12 chr1 237080574 237081001 -45112663 - MLT1C LTR MaLR -3 464 1 382 206 163 0 chr1 237081513 237081605 -45112059 + MER94 DNA DNA 26 132 -2 2337 80 0 7 chr1 237083583 237083862 -45109802 + AluSg SINE Alu 3 281 -29 780 11 0 0 chr1 237083862 237083951 -45109713 + (CAATA)n Simple_repeat Simple_repeat 2 90 0 248 182 0 0 chr1 237083971 237084015 -45109649 + L1M2 LINE L1 5616 5659 -638 181 275 38 12 chr1 237084114 237084194 -45109470 + L2 LINE L2 3216 3297 -16 234 254 34 34 chr1 237084213 237084331 -45109333 + L1ME LINE L1 5707 5824 -297 1261 149 5 0 chr1 237085616 237085804 -45107860 - MER5A DNA MER1_type 0 189 1 426 254 168 33 chr1 237086425 237086818 -45106846 - L1ME4a LINE L1 -5 6116 5671 234 260 113 28 chr1 237086940 237087117 -45106547 - L1ME4a LINE L1 -2319 5489 5298 1062 169 40 30 chr1 237087659 237087860 -45105804 + MLT1D LTR MaLR 1 203 -302 22 35 0 0 chr1 237087876 237087905 -45105759 + AT_rich Low_complexity Low_complexity 1 29 0 1213 258 82 130 chr1 237087912 237089057 -45104607 - HAL1 LINE L1 -1414 1093 4 2376 193 102 20 chr1 237089147 237089742 -45103922 + LTR48B LTR ERV1 1 644 0 1963 190 81 36 chr1 237090123 237090570 -45103094 - MLT1C LTR MaLR 0 467 1 619 266 69 26 chr1 237090615 237090848 -45102816 + MIR SINE MIR 20 262 0 238 272 49 71 chr1 237090908 237091092 -45102572 - Charlie7 DNA MER1_type -1 2611 2432 204 222 0 0 chr1 237091334 237091351 -45102313 + T-rich Low_complexity Low_complexity 1 17 -28 1837 108 0 12 chr1 237091351 237091602 -45102062 - AluSx SINE Alu -64 248 1 204 222 0 0 chr1 237091602 237091629 -45102035 + T-rich Low_complexity Low_complexity 16 45 0 2020 102 72 13 chr1 237091630 237091934 -45101730 - L1PA11 LINE L1 -1 6173 5852 445 310 132 8 chr1 237092031 237092289 -45101375 - HAL1 LINE L1 -590 1917 1628 936 292 79 69 chr1 237092290 237092750 -45100914 + L1MB7 LINE L1 2620 3074 -3072 2278 95 0 0 chr1 237092750 237093035 -45100629 + AluSg SINE Alu 11 295 -15 936 292 79 69 chr1 237093035 237093745 -45099919 + L1MB7 LINE L1 3074 3775 -2371 2008 155 0 0 chr1 237093745 237094036 -45099628 + AluJb SINE Alu 1 291 -21 936 292 79 69 chr1 237094036 237094934 -45098730 + L1MB7 LINE L1 3775 4743 -1403 2289 113 0 0 chr1 237094934 237095235 -45098429 + AluSx SINE Alu 1 301 -11 936 292 79 69 chr1 237095235 237095342 -45098322 + L1MB7 LINE L1 4743 4847 -1299 720 150 50 106 chr1 237095441 237095601 -45098063 + MLT1A1 LTR MaLR 169 319 -46 662 274 29 68 chr1 237095601 237096082 -45097582 + L1MB7 LINE L1 4981 5440 -722 1796 161 3 0 chr1 237096082 237096368 -45097296 + L1PA15 LINE L1 5879 6165 0 26 0 0 0 chr1 237096375 237096401 -45097263 + AT_rich Low_complexity Low_complexity 1 26 0 3465 672 70 208 chr1 237096988 237097212 -45096452 + L1MB7 LINE L1 5421 5674 -510 1659 182 3 36 chr1 237097212 237097520 -45096144 - AluJo SINE Alu -14 298 1 3465 672 70 208 chr1 237097520 237097754 -45095910 + L1MB7 LINE L1 5674 5939 -245 3465 150 36 30 chr1 237097754 237098145 -45095519 + L1MB7 LINE L1 5518 5905 -279 2143 146 33 3 chr1 237098145 237098481 -45095183 - MER7A DNA MER2_type 0 346 3 3465 150 36 30 chr1 237098481 237098697 -45094967 + L1MB7 LINE L1 5905 6132 -52 2372 95 0 7 chr1 237098697 237099002 -45094662 + AluSc SINE Alu 5 307 -2 3465 150 36 30 chr1 237099002 237099054 -45094610 + L1MB7 LINE L1 6132 6182 -2 3465 672 70 208 chr1 237099054 237099145 -45094519 + L1MB7 LINE L1 5939 6182 -2 372 22 0 0 chr1 237099398 237099443 -45094221 + (CA)n Simple_repeat Simple_repeat 2 46 0 748 264 42 13 chr1 237099791 237100030 -45093634 - MIR SINE MIR 0 262 17 793 198 19 19 chr1 237100149 237100311 -45093353 + LTR65 LTR ERV1 1 162 -507 262 275 108 42 chr1 237100294 237100414 -45093250 + MER90 LTR ERV1 289 416 -198 * 378 265 27 25 chr1 237100452 237100647 -45093017 + LTR65 LTR ERV1 405 650 -19 237 83 0 0 chr1 237101459 237101495 -45092169 + (TTA)n Simple_repeat Simple_repeat 1 36 0 233 352 133 0 chr1 237101590 237101695 -45091969 - MIR SINE MIR -57 151 33 341 275 81 6 chr1 237102415 237102575 -45091089 + L2 LINE L2 2632 2803 -511 211 294 12 138 chr1 237102657 237102964 -45090700 + L2 LINE L2 2918 3180 -92 2299 92 3 3 chr1 237102964 237103259 -45090405 - AluSc SINE Alu -14 295 1 211 294 12 138 chr1 237103259 237103291 -45090373 + L2 LINE L2 3180 3214 -58 197 277 0 0 chr1 237103338 237103385 -45090279 - L2 LINE L2 -8 3264 3218 235 204 37 0 chr1 237103505 237103559 -45090105 + L2 LINE L2 3258 3313 0 2276 131 0 0 chr1 237103603 237103915 -45089749 - AluSx SINE Alu 0 312 1 238 270 20 50 chr1 237103948 237104048 -45089616 - MIR SINE MIR -164 98 2 233 352 0 0 chr1 237104548 237104619 -45089045 + GA-rich Low_complexity Low_complexity 4 74 0 344 298 35 0 chr1 237104662 237104776 -45088888 - MIR SINE MIR -68 194 77 359 272 64 24 chr1 237105122 237105247 -45088417 + MIR3 SINE MIR 15 144 -64 2071 143 8 36 chr1 237106902 237107267 -45086397 - THE1A LTR MaLR 0 355 1 200 204 23 0 chr1 237109476 237109520 -45084144 + CT-rich Low_complexity Low_complexity 1 45 0 2198 125 3 0 chr1 237110714 237111018 -45082646 - AluSx SINE Alu -7 305 1 398 316 82 61 chr1 237111084 237111562 -45082102 + L2 LINE L2 1552 2039 -1275 408 372 39 3 chr1 237111564 237111846 -45081818 - L2 LINE L2 -171 3142 2851 530 267 74 40 chr1 237111911 237112169 -45081495 - L2 LINE L2 -1309 2005 1734 776 262 5 0 chr1 237112169 237112375 -45081289 - MER3 DNA MER1_type -2 207 1 530 267 74 40 chr1 237112375 237112412 -45081252 - L2 LINE L2 -1580 1734 1700 454 340 128 13 chr1 237112484 237112931 -45080733 + L2 LINE L2 2074 2571 -743 419 259 14 2 chr1 237113038 237113148 -45080516 + MLT1L LTR MaLR 115 290 -310 335 192 86 38 chr1 237113276 237113391 -45080273 + MLT1L LTR MaLR 467 613 -2 291 316 164 41 chr1 237113392 237113709 -45079955 + L2 LINE L2 2622 2977 -337 308 294 130 22 chr1 237114079 237114276 -45079388 + MIR SINE MIR 33 252 -10 395 352 19 0 chr1 237114560 237114722 -45078942 - L2 LINE L2 -207 3065 2901 249 397 49 11 chr1 237115006 237115356 -45078308 + L2 LINE L2 2337 2699 -615 227 308 15 30 chr1 237116503 237116636 -45077028 + L2 LINE L2 2569 2699 -615 226 246 140 44 chr1 237117210 237117324 -45076340 - MIR SINE MIR -3 259 135 192 209 0 0 chr1 237117476 237117519 -45076145 - MIR SINE MIR -209 53 11 208 231 0 0 chr1 237117532 237117571 -45076093 + polypyrimidine Low_complexity Low_complexity 3 41 0 305 109 18 0 chr1 237117571 237117626 -45076038 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 253 219 0 0 chr1 237117652 237117716 -45075948 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 97 0 0 chr1 237117816 237117847 -45075817 + (TA)n Simple_repeat Simple_repeat 1 31 0 219 333 13 0 chr1 237117922 237118000 -45075664 + L3 LINE CR1 1492 1570 -7 470 280 69 11 chr1 237118976 237119165 -45074499 - MIR SINE MIR -12 250 51 197 33 33 0 chr1 237122176 237122206 -45071458 + (CA)n Simple_repeat Simple_repeat 1 31 0 224 342 9 9 chr1 237122944 237123055 -45070609 + (CTGGGG)n Simple_repeat Simple_repeat 1 111 0 825 142 8 8 chr1 237124139 237124266 -45069398 + FLAM_C SINE Alu 1 127 -16 217 279 0 29 chr1 237125520 237125588 -45068076 + G-rich Low_complexity Low_complexity 2 67 0 572 269 74 53 chr1 237127353 237127560 -45066104 - MIR SINE MIR -38 224 14 228 111 0 0 chr1 237127857 237127893 -45065771 + (CAGGG)n Simple_repeat Simple_repeat 4 39 0 322 277 84 17 chr1 237128426 237128545 -45065119 + MIR SINE MIR 6 132 -130 230 95 0 71 chr1 237128776 237128818 -45064846 + MIR SINE MIR 150 188 -74 492 300 132 5 chr1 237134207 237134427 -45059237 - MIR SINE MIR 0 262 15 1263 141 29 66 chr1 237135748 237135821 -45057843 - MSTB LTR MaLR 0 426 352 1798 166 4 0 chr1 237135821 237136139 -45057525 + AluJb SINE Alu 6 324 0 1263 141 29 66 chr1 237136139 237136306 -45057358 - MSTB LTR MaLR -74 352 194 481 169 0 11 chr1 237136320 237136409 -45057255 + MER99 DNA DNA 420 507 -321 324 211 28 0 chr1 237136411 237136482 -45057182 - MSTB LTR MaLR -4 424 352 984 149 48 6 chr1 237136486 237136654 -45057010 - MSTB LTR MaLR -251 175 1 * 1040 205 5 14 chr1 237136654 237136839 -45056825 + MER99 DNA DNA 503 685 -143 504 289 106 53 chr1 237136839 237137310 -45056354 + L2 LINE L2 1191 1686 -1628 455 266 140 0 chr1 237137366 237137509 -45056155 - HAL1 LINE L1 -2340 167 5 818 310 47 50 chr1 237137513 237138130 -45055534 + L2 LINE L2 1822 2436 -878 531 261 83 17 chr1 237138236 237138416 -45055248 + MIR SINE MIR 70 261 -1 291 276 31 31 chr1 237138422 237138549 -45055115 + L2 LINE L2 2591 2717 -597 399 303 26 13 chr1 237138644 237138796 -45054868 - L2 LINE L2 -1 3312 3159 322 299 84 0 chr1 237138961 237139068 -45054596 + L2 LINE L2 2935 3050 -222 451 219 0 29 chr1 237139140 237139245 -45054419 - U13 snRNA snRNA -2 102 1 220 232 43 29 chr1 237139302 237139371 -45054293 + L2 LINE L2 3203 3272 0 2580 43 3 7 chr1 237141368 237141672 -45051992 - AluY SINE Alu -8 303 1 5417 45 8 1 chr1 237141680 237142339 -45051325 - L1PA7 LINE L1 0 6154 5492 347 295 257 37 chr1 237142497 237142711 -45050953 - L3 LINE CR1 -251 1326 1160 2372 103 0 0 chr1 237142711 237143022 -45050642 + AluY SINE Alu 1 311 0 347 295 257 37 chr1 237143022 237143430 -45050234 - L3 LINE CR1 -417 1160 567 450 168 290 0 chr1 237143484 237143615 -45050049 - MER5A DNA MER1_type -20 169 1 21 0 0 0 chr1 237146628 237146649 -45047015 + AT_rich Low_complexity Low_complexity 1 21 0 206 218 18 18 chr1 237147296 237147351 -45046313 + L2 LINE L2 3258 3312 -1 281 268 0 0 chr1 237152263 237152334 -45041330 + L2 LINE L2 3242 3312 -1 2075 100 32 19 chr1 237152824 237153133 -45040531 + AluSp SINE Alu 1 313 0 2507 59 7 0 chr1 237154342 237154646 -45039018 - AluSc SINE Alu -3 306 1 253 281 8 78 chr1 237154787 237154915 -45038749 + MIR SINE MIR 88 206 -56 217 188 83 0 chr1 237154949 237154997 -45038667 - MIR3 SINE MIR -49 159 108 198 0 0 0 chr1 237156086 237156108 -45037556 + (TA)n Simple_repeat Simple_repeat 1 22 0 877 234 55 0 chr1 237156411 237156629 -45037035 + MIR SINE MIR 3 232 -30 2071 88 0 97 chr1 237157610 237157939 -45035725 + AluYa8 SINE Alu 1 297 -13 183 100 0 0 chr1 237157963 237157993 -45035671 + (T)n Simple_repeat Simple_repeat 1 30 0 352 278 59 5 chr1 237158283 237158406 -45035258 - L1MC/D LINE L1 -370 5751 5663 252 315 42 28 chr1 237158874 237159017 -45034647 + MIR3 SINE MIR 3 147 -61 27 62 0 0 chr1 237159033 237159081 -45034583 + AT_rich Low_complexity Low_complexity 1 48 0 944 144 14 0 chr1 237159098 237159237 -45034427 - AluJb SINE Alu -171 141 1 281 318 18 18 chr1 237160644 237160754 -45032910 + MIR SINE MIR 36 145 -63 1261 162 52 63 chr1 237161240 237161404 -45032260 - AluJo SINE Alu 0 305 141 246 95 0 0 chr1 237161404 237161446 -45032218 + (TA)n Simple_repeat Simple_repeat 2 43 0 1261 162 52 63 chr1 237161446 237161468 -45032196 - AluJo SINE Alu -164 141 120 838 116 0 11 chr1 237161468 237161649 -45032015 + (TA)n Simple_repeat Simple_repeat 2 180 0 1261 162 52 63 chr1 237161649 237161755 -45031909 - AluJo SINE Alu -185 120 15 786 219 26 37 chr1 237162591 237162861 -45030803 + LTR37B LTR ERV1 193 459 -9 346 216 0 27 chr1 237163889 237163963 -45029701 + MER5A DNA MER1_type 9 80 -109 1353 231 0 0 chr1 237163973 237164254 -45029410 + AluJb SINE Alu 14 294 -18 219 237 17 17 chr1 237164305 237164364 -45029300 + MER5A DNA MER1_type 128 186 -3 31 0 0 0 chr1 237164701 237164732 -45028932 + AT_rich Low_complexity Low_complexity 1 31 0 1670 155 72 13 chr1 237165382 237165686 -45027978 + L1PA11 LINE L1 5852 6173 -1 339 155 0 0 chr1 237165714 237165772 -45027892 + AluS SINE Alu 1 58 -243 1041 178 29 62 chr1 237166218 237166291 -45027373 - MSTB LTR MaLR 0 426 352 1462 197 14 10 chr1 237166291 237166571 -45027093 + AluJb SINE Alu 6 289 -23 209 57 29 0 chr1 237166571 237166606 -45027058 + (CACAA)n Simple_repeat Simple_repeat 2 37 0 1041 178 29 62 chr1 237166615 237166782 -45026882 - MSTB LTR MaLR -74 352 194 411 176 0 12 chr1 237166796 237166881 -45026783 + MER99 DNA DNA 420 503 -325 817 161 65 24 chr1 237166962 237167130 -45026534 - MSTB LTR MaLR -251 175 1 1732 184 3 0 chr1 237167596 237167900 -45025764 + AluSx SINE Alu 1 305 -7 1551 180 13 17 chr1 237172331 237172631 -45021033 - AluJb SINE Alu -1 311 13 703 207 7 22 chr1 237173767 237173928 -45019736 - FLAM_C SINE Alu 0 159 1 485 233 51 28 chr1 237174415 237174591 -45019073 + L1MB7 LINE L1 6004 6183 -1 2005 199 55 0 chr1 237174685 237175088 -45018576 + MSTC LTR MaLR 4 428 0 251 354 0 10 chr1 237175163 237175262 -45018402 - L2 LINE L2 -211 3061 2964 1517 154 110 51 chr1 237175907 237176412 -45017252 - MER44D DNA MER2_type 0 605 1 220 322 107 0 chr1 237176582 237176703 -45016961 + L2 LINE L2 3139 3272 0 831 277 62 11 chr1 237176730 237176898 -45016766 + MER21B LTR ERV1 34 221 -642 210 71 0 0 chr1 237176898 237176926 -45016738 + (CACCC)n Simple_repeat Simple_repeat 2 29 0 831 277 62 11 chr1 237176926 237177017 -45016647 + MER21B LTR ERV1 221 306 -557 366 225 192 8 chr1 237178734 237178854 -45014810 - MER5A DNA MER1_type 0 189 48 213 39 0 0 chr1 237180910 237180936 -45012728 + (A)n Simple_repeat Simple_repeat 1 26 0 590 176 130 0 chr1 237181428 237181536 -45012128 - FLAM_A SINE Alu -11 122 1 30 45 0 0 chr1 237183427 237183471 -45010193 + AT_rich Low_complexity Low_complexity 1 44 0 230 231 0 0 chr1 237183695 237183747 -45009917 - L2 LINE L2 0 3313 3262 375 174 0 14 chr1 237184579 237184648 -45009016 - AluJo SINE Alu -160 142 75 1498 177 3 46 chr1 237185690 237185972 -45007692 + AluJo SINE Alu 13 282 -30 424 305 34 0 chr1 237186014 237186132 -45007532 - MLT1J LTR MaLR -193 318 197 254 135 39 0 chr1 237186133 237186185 -45007479 + L1MA3 LINE L1 6252 6305 0 738 241 82 65 chr1 237186461 237186985 -45006679 - MER34B LTR ERV1 0 565 12 1708 168 30 26 chr1 237187873 237188176 -45005488 - AluJo SINE Alu -8 304 1 198 145 0 53 chr1 237188558 237188634 -45005030 + (TCTCTG)n Simple_repeat Simple_repeat 6 77 0 472 202 101 54 chr1 237188886 237189054 -45004610 + MER46C DNA MER2_type 12 187 -151 949 177 30 42 chr1 237189559 237189824 -45003840 + LTR37B LTR ERV1 198 459 -9 244 224 196 19 chr1 237189990 237190097 -45003567 - L2 LINE L2 -1 3271 3146 385 261 109 33 chr1 237190102 237190286 -45003378 - MER34C LTR ERV1 -3 582 385 1913 111 0 0 chr1 237190336 237190579 -45003085 + AluSx SINE Alu 1 243 -69 305 194 83 14 chr1 237190889 237190961 -45002703 - MER34C LTR ERV1 -473 112 36 287 326 29 51 chr1 237192247 237192422 -45001242 - MER5B DNA MER1_type -5 173 3 257 324 36 18 chr1 237194419 237194530 -44999134 - MIR SINE MIR -78 130 18 21 0 0 0 chr1 237194664 237194685 -44998979 + AT_rich Low_complexity Low_complexity 1 21 0 191 167 24 0 chr1 237197087 237197129 -44996535 - MIR SINE MIR -25 237 195 2323 96 0 0 chr1 237197371 237197673 -44995991 + AluSg1 SINE Alu 1 302 -7 305 62 21 0 chr1 237198290 237198338 -44995326 + (CA)n Simple_repeat Simple_repeat 2 50 0 2250 85 7 10 chr1 237199464 237199757 -44993907 + AluSq SINE Alu 1 292 -21 228 205 51 26 chr1 237200328 237200445 -44993219 + (TA)n Simple_repeat Simple_repeat 1 120 0 1178 176 44 0 chr1 237200509 237200714 -44992950 + MER20 DNA MER1_type 1 214 -5 1968 145 0 3 chr1 237200764 237201061 -44992603 + AluJb SINE Alu 1 296 -16 186 43 0 0 chr1 237201524 237201547 -44992117 + (CCCCG)n Simple_repeat Simple_repeat 1 23 0 868 189 170 12 chr1 237201991 237202250 -44991414 - AluJb SINE Alu -1 301 2 274 23 47 0 chr1 237202502 237202545 -44991119 + (CA)n Simple_repeat Simple_repeat 2 46 0 271 296 148 17 chr1 237203906 237204021 -44989643 + MIR3 SINE MIR 3 132 -76 2269 98 17 0 chr1 237204517 237204812 -44988852 - AluSc SINE Alu -9 300 1 32 0 0 0 chr1 237405113 237405145 -44788519 + AT_rich Low_complexity Low_complexity 1 32 0 214 365 218 19 chr1 237405543 237405699 -44787965 + MIR3 SINE MIR 16 202 -6 183 308 75 47 chr1 237406035 237406142 -44787522 - L2 LINE L2 -7 3306 3197 29 47 0 0 chr1 237407071 237407114 -44786550 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr1 237408253 237408279 -44785385 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 194 338 0 50 chr1 237408736 237408816 -44784848 - L2 LINE L2 0 3272 3197 549 211 55 0 chr1 237409066 237409175 -44784489 - MIR3 SINE MIR -12 196 82 981 250 23 0 chr1 237409743 237409963 -44783701 - MIR SINE MIR 0 262 38 512 90 26 0 chr1 237411316 237411394 -44782270 + MADE1 DNA Mariner 1 80 0 1932 137 55 3 chr1 237411809 237412101 -44781563 + AluSx SINE Alu 1 307 -5 932 187 20 0 chr1 237412101 237412298 -44781366 + AluSg/x SINE Alu 134 333 0 2317 109 0 0 chr1 237412686 237412988 -44780676 + AluSq SINE Alu 1 302 -11 4272 174 56 27 chr1 237414172 237414354 -44779310 + L1MC2 LINE L1 5224 5399 -945 1991 111 33 0 chr1 237414354 237414656 -44779008 + L1PA16 LINE L1 5842 6157 -9 4272 174 56 27 chr1 237414656 237415501 -44778163 + L1MC2 LINE L1 5399 6288 -56 2521 53 0 3 chr1 237415501 237415804 -44777860 - AluY SINE Alu -9 302 1 208 333 0 0 chr1 237417653 237417710 -44775954 - MER5A DNA MER1_type -64 125 69 273 29 0 0 chr1 237417711 237417745 -44775919 + (CA)n Simple_repeat Simple_repeat 2 35 0 1001 264 94 33 chr1 237418351 237418855 -44774809 + L2 LINE L2 2606 3148 -165 638 221 120 77 chr1 237419296 237419538 -44774126 + L1MC5 LINE L1 7349 7579 -382 2058 105 0 54 chr1 237419538 237419851 -44773813 + AluSx SINE Alu 1 296 -16 638 221 120 77 chr1 237419851 237420182 -44773482 + L1MC5 LINE L1 7579 7947 -14 1481 213 0 33 chr1 237420405 237420705 -44772959 + AluJo SINE Alu 11 300 -12 2240 78 14 0 chr1 237420917 237421200 -44772464 - AluY SINE Alu -24 287 1 22 70 0 0 chr1 237421260 237421303 -44772361 + AT_rich Low_complexity Low_complexity 1 43 0 1589 160 77 10 chr1 237421838 237422150 -44771514 + THE1C LTR MaLR 43 375 0 9818 107 38 42 chr1 237422150 237422273 -44771391 + THE1C-int LTR MaLR 1 123 -1457 2217 125 3 0 chr1 237422273 237422584 -44771080 + AluSq SINE Alu 1 312 -1 9818 107 38 42 chr1 237422584 237424046 -44769618 + THE1C-int LTR MaLR 123 1579 -1 2076 141 53 14 chr1 237424047 237424408 -44769256 + THE1C LTR MaLR 1 375 0 288 250 89 89 chr1 237424648 237424767 -44768897 + MIR SINE MIR 81 202 -60 2202 112 0 0 chr1 237424767 237425070 -44768594 - AluSc SINE Alu -6 303 1 288 250 89 89 chr1 237425070 237425130 -44768534 + MIR SINE MIR 201 260 -2 239 333 55 30 chr1 237426243 237426444 -44767220 - MER67A LTR ERV1 0 543 338 2325 70 0 7 chr1 237426490 237426788 -44766876 + AluY SINE Alu 1 296 -15 2127 120 3 0 chr1 237427212 237427504 -44766160 + AluSc SINE Alu 11 303 -6 8614 186 8 20 chr1 237427566 237428507 -44765157 + L1PA14 LINE L1 2371 3322 -2824 2055 152 7 0 chr1 237428507 237428816 -44764848 + AluSx SINE Alu 1 311 -1 8614 186 8 20 chr1 237428816 237429804 -44763860 + L1PA14 LINE L1 3322 4276 -1870 5958 113 8 7 chr1 237429805 237431559 -44762105 + L1PA14 LINE L1 4423 6161 0 4574 131 35 34 chr1 237431895 237432233 -44761431 - L1PB3 LINE L1 -2 6152 5816 2012 128 0 0 chr1 237432233 237432529 -44761135 - AluSg1 SINE Alu -13 296 1 4574 131 35 34 chr1 237432529 237433105 -44760559 - L1PB3 LINE L1 -338 5816 5237 612 108 0 0 chr1 237434387 237434480 -44759184 - Alu SINE Alu 0 312 220 2033 55 36 11 chr1 237434490 237434787 -44758877 - AluY SINE Alu 0 304 1 287 303 0 0 chr1 237435776 237435852 -44757812 - MER31-int LTR ERV1 -4089 847 772 1957 170 16 32 chr1 237437190 237437632 -44756032 + MER66B LTR ERV1 52 486 0 265 277 15 15 chr1 237438601 237438666 -44754998 + MIR3 SINE MIR 14 78 -130 230 303 118 23 chr1 237439714 237440156 -44753508 - L1ME3A LINE L1 -222 5931 5448 918 201 10 19 chr1 237440480 237440689 -44752975 + Tigger6a DNA MER2_type 5 211 -872 1452 224 42 37 chr1 237440689 237441144 -44752520 - MLT1C LTR MaLR 0 467 11 * 3045 196 93 24 chr1 237441141 237441752 -44751912 + Tigger6a DNA MER2_type 220 902 -695 2115 133 0 0 chr1 237441752 237442046 -44751618 + AluY SINE Alu 1 294 -17 3045 196 93 24 chr1 237442046 237442242 -44751422 + Tigger6a DNA MER2_type 902 1083 0 1298 191 44 14 chr1 237442760 237443054 -44750610 - MER67D LTR ERV1 -108 406 104 1714 126 0 0 chr1 237443096 237443335 -44750329 - AluSc SINE Alu -70 239 1 749 193 13 52 chr1 237443335 237443596 -44750068 - MER67B LTR ERV1 -397 225 1 44 35 0 0 chr1 237444007 237444065 -44749599 + AT_rich Low_complexity Low_complexity 1 58 0 880 120 107 0 chr1 237444251 237444401 -44749263 + AluY SINE Alu 118 283 -28 753 193 63 36 chr1 237444745 237444968 -44748696 + MER67B LTR ERV1 1 229 -432 553 224 75 27 chr1 237445072 237445274 -44748390 + MER67D LTR ERV1 86 327 -234 2007 128 0 4 chr1 237447175 237447456 -44746208 - AluSc SINE Alu -29 280 1 249 262 2 86 chr1 237448051 237448206 -44745458 - L1ME3A LINE L1 -1090 5039 4894 549 287 91 11 chr1 237448448 237448810 -44744854 - L1ME3A LINE L1 -2042 4087 3697 235 310 51 6 chr1 237448912 237449070 -44744594 - L1ME3A LINE L1 -2607 3522 3358 688 241 93 102 chr1 237449094 237449430 -44744234 - L1ME3A LINE L1 -11 6159 5821 4436 159 65 2 chr1 237449430 237450266 -44743398 - L1MC1 LINE L1 -11 6322 5435 688 241 93 102 chr1 237450266 237450956 -44742708 - L1ME3A LINE L1 -349 5821 5108 1765 148 40 151 chr1 237451228 237451784 -44741880 - LTR12 LTR ERV1 -218 496 3 552 316 114 64 chr1 237451795 237452267 -44741397 - L1ME3A LINE L1 -5560 559 64 24 32 0 0 chr1 237453556 237453587 -44740077 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr1 237453684 237453710 -44739954 + AT_rich Low_complexity Low_complexity 1 26 0 303 286 69 111 chr1 237453899 237454186 -44739478 - HAL1 LINE L1 -4 2503 2232 2534 68 0 0 chr1 237454186 237454497 -44739167 - AluY SINE Alu 0 311 1 303 286 69 111 chr1 237454497 237454559 -44739105 - HAL1 LINE L1 -275 2232 2169 264 309 90 5 chr1 237455412 237455600 -44738064 - HAL1 LINE L1 -814 1693 1490 * 495 314 52 15 chr1 237455585 237455852 -44737812 + HAL1b LINE L1 376 1733 -774 1665 173 0 7 chr1 237456826 237457139 -44736525 + AluSx SINE Alu 1 311 0 4647 142 65 33 chr1 237457349 237457858 -44735806 - L1MA9 LINE L1 0 6312 5756 207 0 0 0 chr1 237457858 237457881 -44735783 + (TG)n Simple_repeat Simple_repeat 2 24 0 4647 142 65 33 chr1 237457881 237458321 -44735343 - L1MA9 LINE L1 -556 5756 5332 1916 156 42 31 chr1 237458321 237458681 -44734983 + THE1B LTR MaLR 1 364 0 10250 127 13 6 chr1 237458681 237460250 -44733414 + THE1B-int LTR MaLR 1 1580 0 2094 135 36 36 chr1 237460250 237460614 -44733050 + THE1B LTR MaLR 1 364 0 3496 236 34 10 chr1 237460624 237461471 -44732193 - L1MA9 LINE L1 -857 5289 4380 2099 83 36 0 chr1 237461471 237461748 -44731916 - AluY SINE Alu -24 287 1 3496 236 34 10 chr1 237461748 237462012 -44731652 - L1MA9 LINE L1 -1766 4380 4124 * 5428 225 83 25 chr1 237462008 237462393 -44731271 + L1M1 LINE L1 2917 3278 -4287 1734 181 58 0 chr1 237462393 237462719 -44730945 - MER7A DNA MER2_type 0 346 4 5428 225 83 25 chr1 237462719 237464395 -44729269 + L1M1 LINE L1 3278 5104 -2461 3000 187 21 0 chr1 237464518 237465048 -44728616 + Tigger1 DNA MER2_type 1 541 -1877 479 213 0 0 chr1 237465048 237465142 -44728522 - FLAM_A SINE Alu -48 94 1 710 271 11 5 chr1 237465228 237465426 -44728238 + MER90 LTR ERV1 36 214 -361 * 878 243 119 0 chr1 237465422 237465648 -44728016 + MER90 LTR ERV1 322 574 -1 657 203 107 43 chr1 237467309 237467496 -44726168 + MIR SINE MIR 2 200 -62 238 293 156 30 chr1 237467599 237467766 -44725898 - L2 LINE L2 -5 3308 3121 319 219 181 4 chr1 237468057 237468234 -44725430 - MLT1H LTR MaLR -113 454 155 216 0 0 0 chr1 237468274 237468298 -44725366 + (A)n Simple_repeat Simple_repeat 1 24 0 1991 121 3 23 chr1 237468301 237468606 -44725058 + AluSc SINE Alu 1 299 -10 357 252 34 3 chr1 237468614 237468733 -44724931 - MLT1H LTR MaLR -360 189 29 313 290 45 22 chr1 237468810 237469034 -44724630 - L1M4 LINE L1 -1444 4702 4474 1355 163 10 58 chr1 237469165 237469459 -44724205 - L1MB7 LINE L1 -170 6014 5735 336 262 8 63 chr1 237469805 237469931 -44723733 - MER21-int LTR ERV1 -55 4136 4018 2086 159 75 8 chr1 237469936 237470457 -44723207 - L1MB7 LINE L1 -439 5739 5188 1611 108 4 50 chr1 237470467 237470725 -44722939 - THE1B LTR MaLR 0 364 119 356 181 14 14 chr1 237470807 237470879 -44722785 + L1M4 LINE L1 5391 5462 -716 215 298 40 96 chr1 237470879 237471077 -44722587 - L2 LINE L2 -8 3305 3119 689 342 122 14 chr1 237471185 237471627 -44722037 - L2 LINE L2 -353 2961 2472 1656 214 106 9 chr1 237473691 237474116 -44719548 + MER31B LTR ERV1 1 466 0 1837 154 3 16 chr1 237474259 237474564 -44719100 + AluSg SINE Alu 1 301 -9 30 0 0 0 chr1 237474610 237474640 -44719024 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr1 237474891 237474917 -44718747 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 237475833 237475856 -44717808 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr1 237476233 237476291 -44717373 + AT_rich Low_complexity Low_complexity 1 58 0 216 214 0 0 chr1 237476692 237476734 -44716930 + T-rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 237476800 237476821 -44716843 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr1 237477711 237477746 -44715918 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr1 237478226 237478262 -44715402 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 237478417 237478439 -44715225 + AT_rich Low_complexity Low_complexity 1 22 0 1646 187 33 0 chr1 237478538 237478837 -44714827 - 7SLRNA srpRNA srpRNA -2 318 10 2370 155 21 16 chr1 237479064 237479490 -44714174 - MSTA LTR MaLR 0 428 1 7624 195 66 10 chr1 237479490 237481053 -44712611 - MSTA-int LTR MaLR 0 1651 1 2598 126 24 5 chr1 237481053 237481473 -44712191 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr1 237482563 237482592 -44711072 + AT_rich Low_complexity Low_complexity 1 29 0 1705 139 0 4 chr1 237483571 237483865 -44709799 - AluSx SINE Alu 0 327 35 22 0 0 0 chr1 237483949 237483971 -44709693 + AT_rich Low_complexity Low_complexity 1 22 0 480 18 0 0 chr1 237484652 237484709 -44708955 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 24 53 0 0 chr1 237485218 237485256 -44708408 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr1 237485604 237485635 -44708029 + AT_rich Low_complexity Low_complexity 1 31 0 2586 30 0 0 chr1 237485782 237486084 -44707580 - AluY SINE Alu -9 302 1 50 31 0 0 chr1 237486583 237486647 -44707017 + AT_rich Low_complexity Low_complexity 1 64 0 687 267 106 45 chr1 237487030 237487374 -44706290 + L1M4 LINE L1 2948 3270 -2876 2028 140 0 0 chr1 237487374 237487682 -44705982 + AluSx SINE Alu 1 308 -4 687 267 106 45 chr1 237487682 237487978 -44705686 + L1M4 LINE L1 3270 3627 -2519 6672 17 0 0 chr1 237488010 237488774 -44704890 - L1PA2 LINE L1 -3 6152 5389 3675 40 0 0 chr1 237488774 237489221 -44704443 + L1P LINE L1 3557 4003 -2143 461 234 18 42 chr1 237489208 237489375 -44704289 + L1M4 LINE L1 3601 3763 -2383 * 180 179 0 0 chr1 237489380 237489419 -44704245 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 283 33 0 chr1 237489714 237489806 -44703858 + CT-rich Low_complexity Low_complexity 6 100 0 1519 264 43 48 chr1 237489820 237490488 -44703176 - L1M4 LINE L1 -1909 4237 3573 554 228 134 35 chr1 237491897 237492099 -44701565 + MER77 LTR ERV1 4 225 -380 1224 280 56 30 chr1 237492119 237492547 -44701117 + MER77 LTR ERV1 161 599 -6 488 327 79 25 chr1 237492597 237492964 -44700700 - L1MEc LINE L1 -4574 1822 1436 284 357 75 9 chr1 237492998 237493211 -44700453 - L2 LINE L2 -4 3309 3083 317 332 71 37 chr1 237493587 237493912 -44699752 - L1MEc LINE L1 -5284 921 586 1663 63 18 0 chr1 237493925 237494146 -44699518 - L1PA8 LINE L1 0 6172 5948 4284 79 18 20 chr1 237494146 237494754 -44698910 - L1PA7 LINE L1 -42 6112 5506 2388 74 0 6 chr1 237495032 237495343 -44698321 + AluY SINE Alu 1 309 -2 25 0 0 0 chr1 237496608 237496633 -44697031 + AT_rich Low_complexity Low_complexity 1 25 0 1018 271 77 6 chr1 237497010 237497350 -44696314 + MLT1A1 LTR MaLR 1 364 -1 188 292 79 22 chr1 237498425 237498514 -44695150 - L2 LINE L2 -4 3268 3175 1352 204 60 27 chr1 237498962 237499295 -44694369 - MER2 DNA MER2_type 0 344 1 569 216 175 6 chr1 237499642 237499813 -44693851 + MLT1A1 LTR MaLR 1 200 -165 435 116 3 5 chr1 237499807 237499884 -44693780 + MLT1A1 LTR MaLR 289 390 0 * 828 336 13 13 chr1 237499920 237500310 -44693354 + L1MEc LINE L1 411 800 -5596 365 269 108 24 chr1 237500351 237500648 -44693016 + L1MEc LINE L1 933 1254 -5142 322 267 67 13 chr1 237500765 237500861 -44692803 + HAL1 LINE L1 1389 1497 -1010 189 0 0 0 chr1 237500861 237500882 -44692782 + (CA)n Simple_repeat Simple_repeat 2 22 0 322 267 67 13 chr1 237500882 237500935 -44692729 + HAL1 LINE L1 1497 1546 -961 23 0 0 0 chr1 237500936 237500959 -44692705 + AT_rich Low_complexity Low_complexity 1 23 0 426 299 22 76 chr1 237501045 237501229 -44692435 + MER96 DNA MER1_type? 2 175 0 345 244 0 0 chr1 237501353 237501435 -44692229 + L1MEc LINE L1 1985 2066 -4330 397 247 69 53 chr1 237501473 237501720 -44691944 + L1MEc LINE L1 2047 2297 -4099 316 280 24 16 chr1 237501780 237501905 -44691759 + L1MEc LINE L1 2370 2495 -3720 454 227 91 8 chr1 237501922 237502054 -44691610 + L1MA3 LINE L1 6163 6305 0 572 198 0 16 chr1 237502165 237502286 -44691378 + MLT1A1 LTR MaLR 1 119 -246 1012 207 11 0 chr1 237502332 237502511 -44691153 + MLT1A1 LTR MaLR 122 302 -63 28 0 0 0 chr1 237502523 237502551 -44691113 + AT_rich Low_complexity Low_complexity 1 28 0 682 278 73 25 chr1 237502612 237503176 -44690488 + L1MEc LINE L1 3190 3780 -2435 282 281 95 29 chr1 237503183 237503393 -44690271 + L1MEc LINE L1 3952 4175 -2040 579 259 20 10 chr1 237503407 237503608 -44690056 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr1 237503610 237503647 -44690017 + AT_rich Low_complexity Low_complexity 1 37 0 1284 291 75 40 chr1 237503673 237504909 -44688755 + L1M4 LINE L1 2269 3548 -2598 2028 164 11 16 chr1 237505298 237505675 -44687989 - THE1C LTR MaLR 0 375 1 258 320 81 36 chr1 237505676 237505923 -44687741 - L2 LINE L2 -123 3190 2933 1830 161 66 20 chr1 237505941 237506289 -44687375 - THE1B LTR MaLR 0 364 1 270 327 114 24 chr1 237506292 237506546 -44687118 - L1MEc LINE L1 -6015 381 105 185 119 24 0 chr1 237506554 237506596 -44687068 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 393 278 21 21 chr1 237506702 237506986 -44686678 - L1MEc LINE L1 -4079 2317 2034 587 297 73 22 chr1 237507004 237507317 -44686347 + L1M4 LINE L1 4050 4378 -1768 1070 268 47 70 chr1 237507318 237508185 -44685479 + L1MC4 LINE L1 6811 7550 -258 205 274 0 0 chr1 237508478 237508540 -44685124 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr1 237509899 237509971 -44683693 - L2 LINE L2 -47 3266 3193 2466 160 39 0 chr1 237510267 237510680 -44682984 - MER57B LTR ERV1 -5 429 1 821 301 47 23 chr1 237510982 237511324 -44682340 - LTR16B LTR ERVL -6 458 109 3914 161 79 42 chr1 237511331 237512202 -44681462 + MER4D LTR ERV1 1 903 0 226 288 158 56 chr1 237512968 237513253 -44680411 + MLT1J2 LTR MaLR 137 450 0 343 313 119 11 chr1 237514976 237515152 -44678512 + MLT1J LTR MaLR 38 232 -279 514 292 40 32 chr1 237515710 237515987 -44677677 - L1ME3 LINE L1 0 6162 5884 1632 199 3 3 chr1 237516471 237516777 -44676887 - AluJb SINE Alu -6 306 1 229 121 61 30 chr1 237516804 237516870 -44676794 + (TA)n Simple_repeat Simple_repeat 2 69 0 2672 196 21 45 chr1 237517356 237517977 -44675687 + L1MA6 LINE L1 5694 6299 -1 25 0 0 0 chr1 237518932 237518957 -44674707 + AT_rich Low_complexity Low_complexity 1 25 0 2008 158 39 18 chr1 237519679 237519766 -44673898 - MER1B DNA MER1_type -2375 337 253 1892 222 40 65 chr1 237519766 237520334 -44673330 + MLT2B3 LTR ERVL 1 554 0 2008 158 39 18 chr1 237520334 237520576 -44673088 - MER1B DNA MER1_type -2459 253 1 873 192 19 123 chr1 237520576 237520884 -44672780 - MER93b LTR ERV1 0 373 98 2670 165 32 28 chr1 237521259 237521436 -44672228 - MER61D LTR ERV1 -1 500 325 1914 145 3 0 chr1 237521436 237521725 -44671939 - AluSg SINE Alu -19 291 2 2670 165 32 28 chr1 237521725 237522045 -44671619 - MER61D LTR ERV1 -176 325 1 10929 187 39 49 chr1 237522046 237522318 -44671346 - HUERS-P3b LTR ERV1 -1 6995 6722 225 0 0 0 chr1 237522318 237522343 -44671321 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 10929 187 39 49 chr1 237522343 237524786 -44668878 - HUERS-P3b LTR ERV1 -274 6722 4257 1969 148 27 33 chr1 237524786 237525152 -44668512 - THE1B LTR MaLR 0 364 1 10929 187 39 49 chr1 237525152 237526603 -44667061 - HUERS-P3b LTR ERV1 -2739 4257 2793 2321 65 3 50 chr1 237526603 237526926 -44666738 - AluY SINE Alu -3 308 1 10929 187 39 49 chr1 237526926 237527554 -44666110 - HUERS-P3b LTR ERV1 -4203 2793 609 967 180 68 138 chr1 237527553 237528063 -44665601 - MER61D-int LTR ERV1 -2600 488 195 * 2604 155 8 2 chr1 237528063 237528462 -44665202 - MER61D LTR ERV1 -100 401 1 22 80 0 0 chr1 237529191 237529241 -44664423 + AT_rich Low_complexity Low_complexity 1 50 0 542 208 0 0 chr1 237529665 237529771 -44663893 - FRAM SINE Alu -8 168 63 283 159 48 16 chr1 237529771 237529834 -44663830 + LTR68 LTR ERV1 23 87 -653 1101 231 47 27 chr1 237530021 237530320 -44663344 + LTR68 LTR ERV1 309 613 -127 27 0 0 0 chr1 237530419 237530446 -44663218 + AT_rich Low_complexity Low_complexity 1 27 0 622 126 117 0 chr1 237530543 237530654 -44663010 - L1PB3 LINE L1 -11 6200 6077 11073 209 34 39 chr1 237530756 237535181 -44658483 - L1PB3 LINE L1 -123 6088 1494 4672 157 41 33 chr1 237535167 237536158 -44657506 - L1PB3 LINE L1 -5066 1138 140 * 1670 248 34 28 chr1 237536159 237536750 -44656914 - L1PB3 LINE L1 -5223 981 1 2174 295 44 32 chr1 237536851 237537961 -44655703 - L1PBa LINE L1 -5738 1125 3 29 70 0 0 chr1 237538084 237538141 -44655523 + AT_rich Low_complexity Low_complexity 1 57 0 230 214 0 0 chr1 237539842 237539884 -44653780 + GA-rich Low_complexity Low_complexity 3 44 0 504 246 81 28 chr1 237540249 237540497 -44653167 + LTR37B LTR ERV1 208 468 0 472 333 66 68 chr1 237540628 237540937 -44652727 + L1MEd LINE L1 447 756 -5363 2044 133 3 3 chr1 237540937 237541238 -44652426 + AluSq SINE Alu 2 302 -11 472 333 66 68 chr1 237541238 237541445 -44652219 + L1MEd LINE L1 756 962 -5157 27 0 0 0 chr1 237541451 237541478 -44652186 + AT_rich Low_complexity Low_complexity 1 27 0 702 287 302 22 chr1 237542073 237542192 -44651472 + L2 LINE L2 1864 1948 -1366 236 71 48 0 chr1 237542192 237542234 -44651430 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 702 287 302 22 chr1 237542234 237542664 -44651000 + L2 LINE L2 1948 2567 -747 206 366 89 19 chr1 237542737 237542950 -44650714 + L2 LINE L2 2996 3223 -90 928 276 85 28 chr1 237543042 237543440 -44650224 + MLT1C LTR MaLR 47 467 0 26 50 0 0 chr1 237543722 237543762 -44649902 + AT_rich Low_complexity Low_complexity 1 40 0 257 348 68 22 chr1 237543824 237544180 -44649484 + L1MC/D LINE L1 5496 5876 -288 21 0 0 0 chr1 237545006 237545027 -44648637 + AT_rich Low_complexity Low_complexity 1 21 0 34 99 0 0 chr1 237545470 237545581 -44648083 + AT_rich Low_complexity Low_complexity 1 111 0 22 70 0 0 chr1 237545770 237545813 -44647851 + AT_rich Low_complexity Low_complexity 1 43 0 1438 264 54 43 chr1 237546096 237546668 -44646996 + MLT1G LTR MaLR 13 549 0 200 268 12 0 chr1 237547808 237547890 -44645774 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 180 325 168 29 chr1 237547992 237548201 -44645463 - MIR SINE MIR 0 262 25 733 237 81 86 chr1 237548491 237548887 -44644777 - MSTD LTR MaLR 0 396 3 274 243 117 0 chr1 237548889 237549000 -44644664 + MER103 DNA DNA 31 154 -12 21 0 0 0 chr1 237549683 237549704 -44643960 + AT_rich Low_complexity Low_complexity 1 21 0 629 171 0 0 chr1 237549704 237549815 -44643849 - AluJb SINE Alu -14 298 188 1680 205 129 91 chr1 237549817 237550719 -44642945 - LTR1B LTR ERV1 -4 1016 1 1168 182 5 0 chr1 237550733 237550925 -44642739 - AluJb SINE Alu -119 193 1 27 0 0 0 chr1 237550952 237550979 -44642685 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr1 237551183 237551211 -44642453 + AT_rich Low_complexity Low_complexity 1 28 0 48 43 0 0 chr1 237551281 237551350 -44642314 + AT_rich Low_complexity Low_complexity 1 69 0 329 311 69 9 chr1 237551583 237551835 -44641829 + L1ME LINE L1 5272 5539 -582 559 314 102 8 chr1 237552067 237552303 -44641361 + MIR SINE MIR 5 262 0 1007 247 5 0 chr1 237554746 237554969 -44638695 + MER58A DNA MER1_type 1 224 0 310 232 127 70 chr1 237554981 237555123 -44638541 + MER69A DNA AcHobo 20 169 -8 1935 171 28 22 chr1 237555224 237555586 -44638078 + THE1B LTR MaLR 1 364 0 10566 111 29 5 chr1 237555586 237557130 -44636534 + THE1B-int LTR MaLR 1 1580 0 1934 162 39 25 chr1 237557130 237557489 -44636175 + THE1B LTR MaLR 1 364 0 2101 119 13 7 chr1 237558951 237559370 -44634294 - AluSq SINE Alu 0 422 2 22 0 0 0 chr1 237559986 237560008 -44633656 + AT_rich Low_complexity Low_complexity 1 22 0 567 59 12 0 chr1 237560670 237560755 -44632909 - L1PA13 LINE L1 0 6163 6078 440 171 13 0 chr1 237561152 237561228 -44632436 + MER45A DNA AcHobo 101 177 -1 1380 236 86 16 chr1 237561532 237561918 -44631746 + MLT1C LTR MaLR 55 467 0 619 252 0 0 chr1 237562441 237562568 -44631096 + MER45A DNA AcHobo 52 178 0 2359 291 61 61 chr1 237565800 237566229 -44627435 + L2 LINE L2 1098 1526 -1788 766 230 17 65 chr1 237566229 237566459 -44627205 - MER20 DNA MER1_type 0 219 1 2359 291 61 61 chr1 237566459 237567252 -44626412 + L2 LINE L2 1525 2320 -994 860 288 128 21 chr1 237567364 237567753 -44625911 + LTR33A LTR ERVL 87 517 -6 704 290 53 95 chr1 237567753 237568467 -44625197 + L2 LINE L2 2310 3066 -247 194 276 69 0 chr1 237568654 237568712 -44624952 + L3 LINE CR1 932 993 -584 311 327 10 0 chr1 237568829 237568933 -44624731 + MIR SINE MIR 110 214 -48 183 299 111 35 chr1 237569595 237569739 -44623925 + L2 LINE L2 2717 2871 -443 2453 67 0 0 chr1 237569913 237570212 -44623452 + AluY SINE Alu 1 299 -12 189 0 0 0 chr1 237570238 237570259 -44623405 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 277 281 88 38 chr1 237570752 237570912 -44622752 + L1MC5 LINE L1 7697 7864 -97 24 0 0 0 chr1 237571437 237571461 -44622203 + AT_rich Low_complexity Low_complexity 1 24 0 936 336 50 7 chr1 237572861 237573277 -44620387 - LTR16B LTR ERVL -9 455 22 180 0 0 0 chr1 237573307 237573327 -44620337 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 33 66 0 0 chr1 237574229 237574290 -44619374 + AT_rich Low_complexity Low_complexity 1 61 0 24 67 0 0 chr1 237574349 237574394 -44619270 + AT_rich Low_complexity Low_complexity 1 45 0 690 241 29 23 chr1 237574595 237574769 -44618895 + MER45A DNA AcHobo 1 175 -3 271 188 0 47 chr1 237574875 237574939 -44618725 - LTR8A LTR ERV1 -100 627 567 5490 32 0 9 chr1 237574939 237575041 -44618623 - SVA Other Other -2 1384 624 5490 29 0 11 chr1 237575041 237575699 -44617965 + SVA Other Other 624 1274 -112 272 343 130 39 chr1 237577745 237578182 -44615482 + L2 LINE L2 590 1066 -2248 1316 227 25 108 chr1 237578788 237579022 -44614642 - MLT1D LTR MaLR -28 477 225 1108 155 10 5 chr1 237579022 237579229 -44614435 + L1MA6 LINE L1 6087 6294 -6 1316 227 25 108 chr1 237579229 237579482 -44614182 - MLT1D LTR MaLR -280 225 33 2046 156 37 6 chr1 237579482 237579835 -44613829 - THE1B LTR MaLR 0 364 1 1316 227 25 108 chr1 237579835 237579866 -44613798 - MLT1D LTR MaLR -472 33 1 183 42 0 0 chr1 237580082 237580106 -44613558 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 395 263 11 0 chr1 237580601 237580696 -44612968 + Zaphod DNA AcHobo 3935 4030 -1 356 266 11 0 chr1 237581174 237581268 -44612396 + MIR SINE MIR 103 197 -65 1721 161 55 0 chr1 237581275 237581385 -44612279 + AluSx SINE Alu 1 104 -208 191 36 36 0 chr1 237581385 237581413 -44612251 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1721 161 55 0 chr1 237581413 237581593 -44612071 + AluSx SINE Alu 104 307 -5 4129 93 25 10 chr1 237582442 237583045 -44610619 + L1PA8 LINE L1 5533 6144 -28 189 74 0 0 chr1 237583045 237583072 -44610592 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 387 280 70 58 chr1 237583703 237584117 -44609547 + L1ME1 LINE L1 4755 5173 -973 8767 100 13 1 chr1 237584125 237586157 -44607507 - L1PA7 LINE L1 -10 6144 4089 21 0 0 0 chr1 237586157 237586178 -44607486 + AT_rich Low_complexity Low_complexity 1 21 0 436 281 92 20 chr1 237586260 237586413 -44607251 + MER77 LTR ERV1 62 225 -380 * 1806 238 48 39 chr1 237586381 237586840 -44606824 + MER77 LTR ERV1 143 605 0 1805 258 71 53 chr1 237586840 237587750 -44605914 + L1ME1 LINE L1 5243 6161 -5 24 32 0 0 chr1 237587890 237587921 -44605743 + AT_rich Low_complexity Low_complexity 1 31 0 2820 16 0 0 chr1 237588318 237588633 -44605031 - AluYb8 SINE Alu -3 315 1 471 300 70 35 chr1 237589398 237589753 -44603911 + L1ME LINE L1 5458 5822 -348 266 305 172 29 chr1 237590302 237590476 -44603188 - MIR SINE MIR 0 262 64 188 111 28 0 chr1 237590614 237590650 -44603014 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr1 237591491 237591524 -44602140 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr1 237591535 237591577 -44602087 + AT_rich Low_complexity Low_complexity 1 42 0 202 62 62 0 chr1 237693133 237693165 -44500499 + CT-rich Low_complexity Low_complexity 2 35 0 1304 132 23 47 chr1 237693167 237693425 -44500239 - L1MB1 LINE L1 -5 6163 5912 521 82 10 72 chr1 237693496 237693593 -44500071 - L1MA3 LINE L1 -5 6300 6210 536 270 144 14 chr1 237694432 237694710 -44498954 - LTR16C LTR ERVL -5 486 173 2272 118 3 0 chr1 237695222 237695528 -44498136 + AluSx SINE Alu 1 307 -5 625 275 74 5 chr1 237697139 237697328 -44496336 + MIR SINE MIR 61 262 0 23 0 0 0 chr1 237697329 237697352 -44496312 + AT_rich Low_complexity Low_complexity 1 23 0 819 10 0 0 chr1 237698171 237698268 -44495396 - L1P1 LINE L1 -474 5681 5585 2286 39 18 0 chr1 237698268 237698548 -44495116 + L1PA5 LINE L1 5866 6153 -1 2047 264 67 20 chr1 237699302 237700811 -44492853 - L1ME3A LINE L1 -172 5998 4413 325 340 121 8 chr1 237700873 237701011 -44492653 - L1ME3A LINE L1 -1818 4328 4207 516 111 0 0 chr1 237701011 237701092 -44492572 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 325 340 121 8 chr1 237701092 237701218 -44492446 - L1ME3A LINE L1 -1939 4207 4034 315 192 0 0 chr1 237701223 237701275 -44492389 + 5S rRNA rRNA 2 53 -68 307 209 14 70 chr1 237701275 237701395 -44492269 - L1 LINE L1 -2165 3981 3861 777 234 136 23 chr1 237701408 237701652 -44492012 - MLT1G1 LTR MaLR -7 588 311 1980 153 0 0 chr1 237701761 237702157 -44491507 + AluSx SINE Alu 1 396 0 634 310 29 21 chr1 237702230 237702511 -44491153 - ERVL LTR ERVL -1122 4642 4360 561 290 29 14 chr1 237702550 237702757 -44490907 + LTR16C LTR ERVL 209 418 -73 2095 134 47 33 chr1 237702851 237703210 -44490454 + THE1B LTR MaLR 1 364 0 188 317 12 24 chr1 237703364 237703446 -44490218 - MIR3 SINE MIR -14 194 114 399 320 90 10 chr1 237703634 237703834 -44489830 + MIR SINE MIR 3 218 -44 1014 22 22 15 chr1 237706339 237706473 -44487191 - L1PB1 LINE L1 -1 6150 6016 426 333 38 29 chr1 237707544 237707754 -44485910 + MIR SINE MIR 1 212 -50 227 181 25 75 chr1 237707758 237707918 -44485746 + (TA)n Simple_repeat Simple_repeat 1 152 0 4582 120 12 0 chr1 237708600 237709290 -44484374 - L1PA15 LINE L1 -2 6163 5466 24 0 0 0 chr1 237709997 237710021 -44483643 + AT_rich Low_complexity Low_complexity 1 24 0 600 182 0 94 chr1 237710764 237710934 -44482730 - MER83C LTR ERV1 0 373 220 34789 89 15 10 chr1 237710934 237717044 -44476620 + L1PA6 LINE L1 46 6154 0 264 224 0 0 chr1 237717037 237717104 -44476560 + L1ME LINE L1 5731 5797 -369 * 327 266 0 13 chr1 237717128 237717207 -44476457 + MER63 DNA MER1_type 984 1061 0 822 166 188 22 chr1 237717242 237717465 -44476199 - MER83B LTR ERV1 -118 260 1 352 304 77 16 chr1 237717944 237718138 -44475526 - LTR16C LTR ERVL -30 461 256 287 357 36 20 chr1 237718548 237718744 -44474920 - LTR16C LTR ERVL -292 199 1 906 261 60 13 chr1 237718782 237719081 -44474583 - HAL1 LINE L1 -716 1791 1479 465 298 58 49 chr1 237719114 237719339 -44474325 - HAL1 LINE L1 -1176 1331 1105 301 216 49 39 chr1 237719364 237719466 -44474198 - HAL1 LINE L1 -1478 1029 927 2451 65 3 7 chr1 237719766 237720075 -44473589 - AluSg1 SINE Alu -1 308 1 301 235 72 82 chr1 237720078 237720368 -44473296 + MLT1J1 LTR MaLR 228 446 0 332 272 37 74 chr1 237720460 237720622 -44473042 - HAL1b LINE L1 -451 897 742 41772 43 1 4 chr1 237721665 237727838 -44465826 + L1PA4 LINE L1 1 6153 -2 1829 221 38 13 chr1 237728030 237728581 -44465083 - L1M4 LINE L1 -1127 5019 4455 283 148 20 0 chr1 237728618 237728693 -44464971 - L1MD1 LINE L1 -2 7993 6169 392 77 77 0 chr1 237728699 237728790 -44464874 + (TA)n Simple_repeat Simple_repeat 1 98 0 351 230 46 11 chr1 237728793 237728880 -44464784 - L1MC4 LINE L1 -1339 6703 6614 1048 225 23 10 chr1 237728880 237729266 -44464398 - L1MD2 LINE L1 -63 6296 5855 * 1190 225 65 0 chr1 237729264 237729615 -44464049 - L1M4 LINE L1 -1762 4384 4011 659 219 0 0 chr1 237730283 237730406 -44463258 + MER96 DNA MER1_type? 49 171 -4 1392 320 57 17 chr1 237730426 237731125 -44462539 - HERV16 LTR ERVL -3539 1457 731 354 131 0 60 chr1 237731232 237731316 -44462348 + L1MA7 LINE L1 6034 6112 -179 323 323 20 30 chr1 237731318 237731519 -44462145 - HERV16 LTR ERVL -4468 528 330 412 285 48 59 chr1 237731811 237732169 -44461495 - LTR16A1 LTR ERVL -48 409 56 417 302 73 5 chr1 237732270 237732462 -44461202 + MIR SINE MIR 7 211 -51 1984 153 3 0 chr1 237732530 237732830 -44460834 - AluSq SINE Alu -12 301 1 22 56 0 0 chr1 237734413 237734449 -44459215 + AT_rich Low_complexity Low_complexity 1 36 0 3480 127 45 14 chr1 237734643 237735218 -44458446 + LTR61 LTR ERV1 1 593 -2 1540 199 28 36 chr1 237735237 237735724 -44457940 + HERV15 LTR ERV1 19 393 -8033 409 246 141 40 chr1 237735907 237736179 -44457485 + HERV15 LTR ERV1 314 861 -7874 26 0 0 0 chr1 237737254 237737280 -44456384 + AT_rich Low_complexity Low_complexity 1 26 0 275 340 20 0 chr1 237738425 237738525 -44455139 + MIR SINE MIR 47 148 -114 225 94 0 0 chr1 237739010 237739042 -44454622 + (TC)n Simple_repeat Simple_repeat 1 32 0 1844 133 23 0 chr1 237739042 237739306 -44454358 - AluSx SINE Alu -10 302 33 1451 266 66 58 chr1 237739696 237740486 -44453178 - L1ME3A LINE L1 -107 6063 5268 1529 223 48 109 chr1 237741160 237741401 -44452263 - L1ME3A LINE L1 -5 6165 5911 315 87 0 0 chr1 237741401 237741447 -44452217 + MADE1 DNA Mariner 1 46 -34 1529 223 48 109 chr1 237741447 237741758 -44451906 - L1ME3A LINE L1 -259 5911 5613 2011 141 3 29 chr1 237741758 237742071 -44451593 - AluJo SINE Alu -7 305 1 1529 223 48 109 chr1 237742071 237742157 -44451507 - L1ME3A LINE L1 -557 5613 5523 572 330 8 6 chr1 237742161 237742512 -44451152 - L1ME3A LINE L1 -968 5178 4827 405 368 0 0 chr1 237742890 237743026 -44450638 + MIR SINE MIR 18 153 -109 742 151 12 54 chr1 237744806 237744972 -44448692 + MLT1B LTR MaLR 230 388 -2 2442 243 73 11 chr1 237744974 237745907 -44447757 + L1ME3A LINE L1 5179 6168 -2 2363 106 0 0 chr1 237745932 237746235 -44447429 - AluSx SINE Alu -9 303 1 591 157 174 0 chr1 237746675 237746796 -44446868 + MSTA LTR MaLR 252 393 -35 1345 101 0 0 chr1 237746799 237746978 -44446686 - AluY SINE Alu 0 311 133 2715 36 0 0 chr1 237746978 237747284 -44446380 - AluYa5 SINE Alu -5 306 1 319 91 0 0 chr1 237747285 237747329 -44446335 + MSTA LTR MaLR 385 428 0 184 306 24 47 chr1 237748159 237748244 -44445420 + L2 LINE L2 908 990 -2324 429 308 45 0 chr1 237748355 237748488 -44445176 + L2 LINE L2 2528 2666 -648 2616 256 49 49 chr1 237748571 237749073 -44444591 - L1ME LINE L1 -4712 1368 868 2265 85 0 0 chr1 237749073 237749356 -44444308 - AluY SINE Alu -8 303 21 2616 256 49 49 chr1 237749356 237750217 -44443447 - L1ME LINE L1 -5212 868 2 1088 283 19 30 chr1 237750256 237750627 -44443037 + L2 LINE L2 2941 3307 -6 555 186 49 176 chr1 237750644 237751031 -44442633 + L1MD2 LINE L1 4821 5158 -988 2212 89 0 33 chr1 237751041 237751343 -44442321 + AluSg SINE Alu 5 296 -14 1670 203 11 56 chr1 237751359 237751808 -44441856 + L1MD2 LINE L1 5782 6210 -149 9271 135 16 22 chr1 237751982 237754830 -44438834 + L1MA2 LINE L1 3471 6299 -5 197 224 30 75 chr1 237755233 237755300 -44438364 + MIR SINE MIR 165 228 -34 26 0 0 0 chr1 237755611 237755637 -44438027 + AT_rich Low_complexity Low_complexity 1 26 0 209 234 13 13 chr1 237756943 237757020 -44436644 + (TTAA)n Simple_repeat Simple_repeat 3 79 0 2271 51 4 4 chr1 237757483 237757780 -44435884 - AluY SINE Alu 0 305 9 810 212 111 23 chr1 237757996 237758213 -44435451 + MIR SINE MIR 8 243 -19 2006 137 7 13 chr1 237758221 237758527 -44435137 - AluSx SINE Alu -8 304 1 24 0 0 0 chr1 237758530 237758554 -44435110 + AT_rich Low_complexity Low_complexity 1 24 0 213 138 0 62 chr1 237758785 237758850 -44434814 + (TCTCCC)n Simple_repeat Simple_repeat 3 63 0 237 322 22 22 chr1 237759321 237759411 -44434253 - MIR SINE MIR -64 198 109 573 311 118 13 chr1 237759421 237759649 -44434015 + MIR SINE MIR 9 260 -2 198 0 0 0 chr1 237760541 237760563 -44433101 + (CATTT)n Simple_repeat Simple_repeat 4 25 0 358 299 21 46 chr1 237761361 237761555 -44432109 - L1M3 LINE L1 -347 5824 5636 1026 209 48 39 chr1 237761649 237762089 -44431575 - L1M4 LINE L1 -2793 3353 2910 2419 61 0 61 chr1 237762493 237762821 -44430843 - AluY SINE Alu -3 308 1 451 202 23 78 chr1 237763263 237763344 -44430320 - MLT1I LTR MaLR 0 409 335 2178 96 0 0 chr1 237763344 237763705 -44429959 + AluY SINE Alu 1 361 0 451 202 23 78 chr1 237763705 237763751 -44429913 - MLT1I LTR MaLR -74 335 288 333 297 31 0 chr1 237763834 237763962 -44429702 - MLT1I LTR MaLR -277 132 1 274 244 23 0 chr1 237764194 237764280 -44429384 + L1MC4a LINE L1 5711 5798 -2010 233 324 0 0 chr1 237764280 237764348 -44429316 - L2 LINE L2 -2 3311 3244 330 282 40 0 chr1 237764369 237764493 -44429171 + L1MC4a LINE L1 5802 5930 -1878 21 57 0 0 chr1 237764651 237764686 -44428978 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 237764710 237764733 -44428931 + AT_rich Low_complexity Low_complexity 1 23 0 821 336 111 34 chr1 237764747 237765681 -44427983 - L2 LINE L2 -1539 1775 719 3350 77 10 14 chr1 237766914 237767405 -44426259 - L1MA3 LINE L1 0 7724 7236 9249 150 20 3 chr1 237767411 237769479 -44424185 - L1MA3 LINE L1 -636 7088 4985 2838 96 3 0 chr1 237769479 237769853 -44423811 - THE1C LTR MaLR 0 375 1 9783 105 47 51 chr1 237769853 237771440 -44422224 - THE1C-int LTR MaLR 0 1580 1 2376 109 23 0 chr1 237771440 237771788 -44421876 - THE1C LTR MaLR 0 375 20 243 130 74 0 chr1 237771795 237771849 -44421815 - L1MA3 LINE L1 -3127 4438 4381 * 21168 145 25 4 chr1 237771842 237775545 -44418119 - L1MA3 LINE L1 -3774 3791 12 1263 135 121 7 chr1 237775555 237775836 -44417828 - L1MA4 LINE L1 0 6300 5988 2256 114 0 0 chr1 237775919 237776216 -44417448 + AluSq SINE Alu 1 297 -16 21 36 0 0 chr1 237776428 237776456 -44417208 + AT_rich Low_complexity Low_complexity 1 28 0 4522 171 26 24 chr1 237776570 237777631 -44416033 + L1MA4 LINE L1 4307 5370 -776 2469 86 3 0 chr1 237777631 237777934 -44415730 + AluSx SINE Alu 1 304 -8 3111 127 12 2 chr1 237778067 237778572 -44415092 + L1MA4 LINE L1 5776 6285 -15 1896 190 27 76 chr1 237778572 237779087 -44414577 + MLT2B3 LTR ERVL 1 490 -64 838 65 89 0 chr1 237779094 237779217 -44414447 + MER85 DNA T2_type 1 134 -5 417 109 0 0 chr1 237779219 237779283 -44414381 + MLT2A2 LTR ERVL 387 450 -3 21 82 0 0 chr1 237779586 237779635 -44414029 + AT_rich Low_complexity Low_complexity 1 49 0 27 81 0 0 chr1 237779784 237779846 -44413818 + AT_rich Low_complexity Low_complexity 1 62 0 1348 192 46 3 chr1 237780133 237780440 -44413224 - L1MA9 LINE L1 -42 6270 5951 3622 172 11 7 chr1 237780441 237781350 -44412314 + L1MA9 LINE L1 5030 5946 -366 678 170 14 27 chr1 237781832 237781979 -44411685 + MER96B DNA MER1_type? 4 148 -269 4440 119 15 52 chr1 237783504 237784320 -44409344 - L1PA14 LINE L1 0 6161 5376 465 276 148 42 chr1 237784513 237784796 -44408868 - MLT1J2 LTR MaLR -16 434 122 863 305 14 75 chr1 237785042 237785485 -44408179 + L2 LINE L2 2289 2704 -610 27 73 0 0 chr1 237785496 237785551 -44408113 + AT_rich Low_complexity Low_complexity 1 55 0 5743 109 8 9 chr1 237785709 237786632 -44407032 - L1MA3 LINE L1 -102 6203 5288 * 14717 156 77 16 chr1 237786628 237791817 -44401847 - L1MA2 LINE L1 -2 7721 2848 2000 125 13 26 chr1 237791817 237792130 -44401534 - AluY SINE Alu -2 309 1 14717 156 77 16 chr1 237792130 237792304 -44401360 - L1MA2 LINE L1 -4875 2848 2686 2167 118 7 0 chr1 237792304 237792601 -44401063 + AluSp SINE Alu 1 299 -14 14717 156 77 16 chr1 237792601 237794329 -44399335 - L1MA2 LINE L1 -5037 2686 195 4978 106 35 1 chr1 237794329 237795105 -44398559 + L1PA15 LINE L1 5361 6162 -3 1065 166 19 0 chr1 237795106 237795311 -44398353 - L1MA2 LINE L1 -7356 209 1 922 286 80 40 chr1 237795319 237795745 -44397919 + L2 LINE L2 2871 3313 0 23 33 0 0 chr1 237800341 237800371 -44393293 + AT_rich Low_complexity Low_complexity 1 30 0 260 271 47 47 chr1 237802786 237802871 -44390793 + L2 LINE L2 3210 3294 -19 450 337 106 39 chr1 237803148 237803403 -44390261 - L2 LINE L2 0 3272 3001 523 252 16 0 chr1 237804031 237804158 -44389506 + MER94 DNA DNA 6 134 0 834 205 19 29 chr1 237804449 237804654 -44389010 + MER3 DNA MER1_type 1 203 -6 2197 125 73 14 chr1 237804689 237805033 -44388631 + THE1B LTR MaLR 1 364 0 11882 88 4 6 chr1 237805033 237806615 -44387049 + THE1B-int LTR MaLR 1 1580 0 2174 109 88 15 chr1 237806615 237806954 -44386710 + THE1B LTR MaLR 1 364 0 1367 160 0 9 chr1 237807286 237807499 -44386165 + AluSg/x SINE Alu 86 296 -16 333 374 16 8 chr1 237807780 237807903 -44385761 + L2 LINE L2 3137 3260 -12 5372 164 12 44 chr1 237808176 237809591 -44384073 - L1MA10 LINE L1 -2 6332 4969 333 266 62 0 chr1 237809621 237809749 -44383915 + L1ME4a LINE L1 5679 5814 -307 248 253 40 30 chr1 237809810 237809909 -44383755 + L1ME4a LINE L1 5964 6063 -58 2513 58 0 0 chr1 237810068 237810376 -44383288 - AluY SINE Alu -3 308 1 373 299 95 14 chr1 237811729 237811876 -44381788 + MIR SINE MIR 20 178 -84 1811 68 24 16 chr1 237812164 237812415 -44381249 - L1PA10 LINE L1 -10 6158 5906 182 358 0 53 chr1 237812512 237812607 -44381057 + MIR3 SINE MIR 115 204 -4 * 253 356 11 0 chr1 237812605 237812692 -44380972 - MIR SINE MIR -105 103 16 1606 65 9 0 chr1 237813597 237813811 -44379853 - MER75B DNA T2_type -27 216 1 409 268 131 55 chr1 237814024 237814207 -44379457 + MIR SINE MIR 56 252 -10 252 382 10 0 chr1 237815759 237815861 -44377803 - L2 LINE L2 -14 3299 3197 640 350 131 22 chr1 237816618 237817422 -44376242 - L2 LINE L2 -1953 1361 471 7172 86 8 17 chr1 237817508 237818574 -44375090 - MER11C LTR ERVK -14 1057 1 27 0 0 0 chr1 237818616 237818643 -44375021 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr1 237818909 237818940 -44374724 + AT_rich Low_complexity Low_complexity 1 31 0 277 340 152 45 chr1 237819045 237819401 -44374263 - L2 LINE L2 -1 3271 2878 23 0 0 0 chr1 237820016 237820039 -44373625 + AT_rich Low_complexity Low_complexity 1 23 0 415 238 195 84 chr1 237820412 237820710 -44372954 + HAL1 LINE L1 33 363 -2144 2249 263 108 58 chr1 237821094 237821770 -44371894 + HAL1 LINE L1 562 1203 -1304 2610 11 0 0 chr1 237821770 237822054 -44371610 + AluYb8 SINE Alu 35 318 0 2249 263 108 58 chr1 237822054 237823026 -44370638 + HAL1 LINE L1 1203 2292 -215 684 209 102 36 chr1 237823452 237823648 -44370016 - MIR SINE MIR -10 252 44 2363 86 0 3 chr1 237824787 237825088 -44368576 - AluY SINE Alu -11 300 1 361 311 75 40 chr1 237825095 237825323 -44368341 - L1ME4a LINE L1 -248 5873 5638 2208 105 0 7 chr1 237825565 237825860 -44367804 - AluSg SINE Alu -17 293 1 2885 201 28 49 chr1 237826111 237826802 -44366862 + LTR8 LTR ERV1 16 691 0 289 319 127 6 chr1 237826939 237827105 -44366559 + MIR SINE MIR 23 208 -54 1899 206 70 35 chr1 237827761 237828328 -44365336 - L1ME2 LINE L1 -9 6155 5569 195 297 116 36 chr1 237828778 237828916 -44364748 + MIR SINE MIR 48 196 -66 536 284 56 0 chr1 237829348 237829510 -44364154 - MIR SINE MIR -10 252 82 432 284 0 0 chr1 237829512 237829995 -44363669 + (CA)n Simple_repeat Simple_repeat 1 483 0 503 160 18 9 chr1 237830051 237830164 -44363500 + LTR8 LTR ERV1 233 359 -368 244 352 83 0 chr1 237830860 237830971 -44362693 + MIR SINE MIR 36 154 -61 188 321 239 22 chr1 237830992 237831310 -44362354 + L2 LINE L2 2013 2399 -915 282 277 45 27 chr1 237832209 237832321 -44361343 - MIR3 SINE MIR -28 180 67 378 330 123 11 chr1 237832446 237832643 -44361021 + MIR SINE MIR 4 218 -44 2469 79 0 0 chr1 237832856 237833161 -44360503 - AluSq SINE Alu -8 305 1 501 216 99 0 chr1 237834182 237834293 -44359371 - MER5B DNA MER1_type -2 176 55 3202 64 5 0 chr1 237834293 237834701 -44358963 + L1PA7 LINE L1 5730 6139 -15 243 140 0 0 chr1 237834701 237834751 -44358913 + (TA)n Simple_repeat Simple_repeat 1 50 0 241 196 0 0 chr1 237834751 237834797 -44358867 - MER5B DNA MER1_type -128 50 5 363 44 0 0 chr1 237834933 237834978 -44358686 + (CA)n Simple_repeat Simple_repeat 1 45 0 743 152 40 0 chr1 237837021 237837172 -44356492 - L1MA4 LINE L1 -22 6278 6122 466 254 12 0 chr1 237837174 237837392 -44356272 + (TA)n Simple_repeat Simple_repeat 1 220 0 366 348 62 13 chr1 237837806 237838028 -44355636 - MIR SINE MIR -31 231 3 22 0 0 0 chr1 237838333 237838355 -44355309 + AT_rich Low_complexity Low_complexity 1 22 0 2177 137 0 0 chr1 237839092 237839392 -44354272 + AluSx SINE Alu 1 300 -12 887 85 85 0 chr1 237839473 237839614 -44354050 - L1MA9 LINE L1 -7 6305 6153 22 56 0 0 chr1 237840002 237840038 -44353626 + AT_rich Low_complexity Low_complexity 1 36 0 201 258 30 0 chr1 237840229 237840295 -44353369 - MIR SINE MIR -12 250 183 306 137 20 0 chr1 237842886 237842937 -44350727 - Zaphod DNA AcHobo -1 4030 3979 553 362 44 49 chr1 237842978 237843387 -44350277 - MER115 DNA AcHobo -286 407 1 183 301 98 49 chr1 237843394 237843557 -44350107 + L2 LINE L2 2633 2803 -511 2059 135 0 10 chr1 237843647 237843951 -44349713 - AluJb SINE Alu -11 301 1 252 349 124 30 chr1 237844024 237844193 -44349471 + L2 LINE L2 3085 3269 -3 189 74 0 0 chr1 237845514 237845541 -44348123 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 237845891 237845921 -44347743 + AT_rich Low_complexity Low_complexity 1 30 0 31 82 0 0 chr1 237846018 237846091 -44347573 + AT_rich Low_complexity Low_complexity 1 73 0 25 51 0 0 chr1 237846228 237846267 -44347397 + AT_rich Low_complexity Low_complexity 1 39 0 408 279 36 81 chr1 237846285 237846532 -44347132 - L1MC/D LINE L1 -2035 5773 5538 786 281 97 55 chr1 237847543 237848496 -44345168 + L1MCc LINE L1 1293 2511 -4611 1471 253 134 35 chr1 237848693 237849513 -44344151 + L1MCc LINE L1 2773 3640 -3301 395 326 47 21 chr1 237849865 237850055 -44343609 - MIR SINE MIR -37 225 31 188 353 108 7 chr1 237852668 237852807 -44340857 - MIR SINE MIR 0 262 110 23 0 0 0 chr1 237853288 237853311 -44340353 + AT_rich Low_complexity Low_complexity 1 23 0 537 144 138 40 chr1 237853684 237853858 -44339806 - L1MC5 LINE L1 -162 7799 7609 13958 174 64 24 chr1 237853873 237854396 -44339268 - L1MA4A LINE L1 -4 7001 6501 1831 157 16 19 chr1 237854396 237854709 -44338955 - AluJo SINE Alu 0 312 1 13958 174 64 24 chr1 237854709 237858754 -44334910 - L1MA4A LINE L1 -504 6501 2091 2208 112 0 10 chr1 237858754 237859058 -44334606 - AluSx SINE Alu -11 301 1 13958 174 64 24 chr1 237859058 237861236 -44332428 - L1MA4A LINE L1 -4914 2091 2 2373 65 0 3 chr1 237861308 237861602 -44332062 - AluY SINE Alu -18 293 1 11763 206 24 16 chr1 237861613 237863229 -44330435 - L1PA15 LINE L1 0 6165 4563 2242 119 0 0 chr1 237863229 237863522 -44330142 - AluSx SINE Alu -16 296 4 11763 206 24 16 chr1 237863522 237865578 -44328086 - L1PA15 LINE L1 -1602 4563 2457 384 229 178 0 chr1 237866320 237866438 -44327226 - MER106B DNA MER1_type -26 1033 895 398 297 86 65 chr1 237866535 237866767 -44326897 + MIR SINE MIR 20 256 -6 440 305 75 0 chr1 237866876 237867050 -44326614 - MIR SINE MIR -10 252 66 705 119 0 56 chr1 237867083 237867209 -44326455 - AluJb SINE Alu -4 308 190 191 233 0 0 chr1 237868326 237868369 -44325295 + MIR SINE MIR 98 140 -68 196 269 0 58 chr1 237868385 237868437 -44325227 - L2 LINE L2 -8 3264 3216 283 233 174 0 chr1 237869769 237869855 -44323809 + MIR3 SINE MIR 103 203 -5 529 189 9 9 chr1 237870675 237870781 -44322883 + MIR SINE MIR 138 243 -19 1728 130 38 39 chr1 237871779 237872092 -44321572 - MER44D DNA MER2_type 0 609 28 27 0 0 0 chr1 237873256 237873283 -44320381 + AT_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr1 237873561 237873582 -44320082 + (T)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr1 237874417 237874441 -44319223 + AT_rich Low_complexity Low_complexity 1 24 0 194 315 101 34 chr1 237875232 237875321 -44318343 - L2 LINE L2 -24 3248 3154 444 318 62 23 chr1 237875999 237876257 -44317407 + L2 LINE L2 254 521 -2793 693 263 112 5 chr1 237876327 237876551 -44317113 + MIR SINE MIR 15 262 0 * 1735 294 123 5 chr1 237876548 237877192 -44316472 - L2 LINE L2 -1750 1564 845 1040 256 79 45 chr1 237877222 237877640 -44316024 + MLT1J2 LTR MaLR 18 449 -1 1054 288 110 5 chr1 237877641 237878013 -44315651 - L2 LINE L2 -2476 838 428 483 344 29 8 chr1 237878067 237878308 -44315356 + L2 LINE L2 551 796 -2518 375 216 23 11 chr1 237878432 237878520 -44315144 + LTR33 LTR ERVL 1 89 -432 461 211 115 44 chr1 237879016 237879720 -44313944 + L1MC3 LINE L1 5481 6134 -1651 189 0 0 0 chr1 237879720 237879741 -44313923 + (TA)n Simple_repeat Simple_repeat 1 21 0 2035 107 34 21 chr1 237879741 237880032 -44313632 - AluSx SINE Alu -13 299 5 461 211 115 44 chr1 237880032 237880422 -44313242 + L1MC3 LINE L1 6134 6622 -1163 2598 144 18 105 chr1 237880422 237880986 -44312678 - MLT2B2 LTR ERVL 0 515 1 461 211 115 44 chr1 237880986 237881016 -44312648 + L1MC3 LINE L1 6622 6648 -1137 216 216 0 0 chr1 237881021 237881072 -44312592 + (TATG)n Simple_repeat Simple_repeat 4 54 0 228 203 76 0 chr1 237881082 237881200 -44312464 + (TA)n Simple_repeat Simple_repeat 2 128 0 199 114 29 43 chr1 237881218 237881288 -44312376 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 1238 132 0 0 chr1 237881394 237881568 -44312096 - AluSg/x SINE Alu -15 297 124 3016 201 65 26 chr1 237881568 237882349 -44311315 + L1MC4 LINE L1 6774 7585 -457 2511 227 68 77 chr1 237882348 237883725 -44309939 + L1M4 LINE L1 3081 4445 -1701 * 393 103 0 0 chr1 237883720 237883778 -44309886 - L1P LINE L1 -956 5190 5133 * 2703 61 0 0 chr1 237883780 237884123 -44309541 + L1PA8 LINE L1 5814 6156 -16 436 244 39 0 chr1 237884160 237884287 -44309377 + L1M4 LINE L1 4457 4588 -1558 4343 120 91 40 chr1 237884614 237885396 -44308268 - LTR12 LTR ERV1 0 826 5 2142 170 47 34 chr1 237885406 237886000 -44307664 - pTR5 LTR ERV1 -1096 1342 741 251 214 0 43 chr1 237886831 237886901 -44306763 + MLT1H LTR MaLR 58 124 -425 314 129 12 118 chr1 237888121 237888206 -44305458 - HsTC2 DNA Tc2 -607 1291 1216 * 321 190 102 0 chr1 237888184 237888288 -44305376 - HsTC2 DNA Tc2 -1772 126 2 235 309 104 8 chr1 237888396 237888655 -44305009 + L1M4 LINE L1 2827 3110 -3036 344 308 47 17 chr1 237888863 237889035 -44304629 + L1M4 LINE L1 5255 5431 -743 927 208 29 0 chr1 237890252 237890425 -44303239 - MER45A DNA AcHobo 0 178 1 385 249 58 52 chr1 237891370 237891543 -44302121 - MER69A DNA AcHobo -3 174 1 1187 226 116 67 chr1 237891902 237892407 -44301257 + MER51C LTR ERV1 1 640 0 1938 64 0 0 chr1 237892767 237893018 -44300646 - L1PA5 LINE L1 -1 6153 5903 198 0 0 0 chr1 237893481 237893503 -44300161 + (TG)n Simple_repeat Simple_repeat 1 22 0 1701 140 29 18 chr1 237893505 237893784 -44299880 - AluJo SINE Alu -30 282 1 2000 107 70 37 chr1 237894572 237894871 -44298793 - AluSg SINE Alu 0 310 2 208 224 0 20 chr1 237895533 237895582 -44298082 - L3 LINE CR1 -319 1258 1211 835 87 16 0 chr1 237895647 237895773 -44297891 + L1PA15 LINE L1 6036 6163 -2 1746 129 11 8 chr1 237895778 237896041 -44297623 + AluSx SINE Alu 36 299 -13 2036 133 3 0 chr1 237896170 237896455 -44297209 + AluSx SINE Alu 21 306 -6 619 333 75 38 chr1 237896501 237896873 -44296791 - L2 LINE L2 0 3313 2928 228 260 90 10 chr1 237897046 237897146 -44296518 - L1MA10 LINE L1 -3 6331 6224 694 254 310 6 chr1 237897146 237897481 -44296183 + L2 LINE L2 1499 1935 -1379 416 261 141 0 chr1 237897505 237897647 -44296017 + L2 LINE L2 3149 3310 -3 1946 154 3 0 chr1 237897879 237898178 -44295486 - AluSx SINE Alu -12 300 1 486 264 102 6 chr1 237898453 237898620 -44295044 + L2 LINE L2 3131 3313 0 705 349 118 25 chr1 237898933 237899577 -44294087 - L2 LINE L2 -1762 1552 849 9697 164 34 6 chr1 237900427 237903376 -44290288 + L1MA4 LINE L1 3261 6294 -6 252 347 102 42 chr1 237903731 237903791 -44289873 + MER5B DNA MER1_type 2 57 -121 2516 140 28 32 chr1 237903791 237904254 -44289410 + MER65C LTR ERV1 1 461 0 252 347 102 42 chr1 237904254 237904360 -44289304 + MER5B DNA MER1_type 57 178 0 21 0 0 0 chr1 237904696 237904717 -44288947 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 237905229 237905250 -44288414 + (T)n Simple_repeat Simple_repeat 1 21 0 2098 131 124 21 chr1 237905573 237905961 -44287703 - MSTA LTR MaLR 0 428 1 333 250 0 0 chr1 237907083 237907151 -44286513 + L1MCa LINE L1 21 88 -6338 * 497 224 4 110 chr1 237907146 237907401 -44286263 + L1M4 LINE L1 2739 2966 -3180 * 2096 146 54 3 chr1 237907398 237907769 -44285895 + L1MC1 LINE L1 5319 5708 -625 3227 99 30 24 chr1 237907772 237908134 -44285530 + LTR3b LTR ERVK 1 368 -132 2497 69 0 0 chr1 237908134 237908440 -44285224 - AluY SINE Alu -5 306 1 3227 99 30 24 chr1 237908440 237908574 -44285090 + LTR3b LTR ERVK 368 500 0 713 118 50 0 chr1 237908574 237908693 -44284971 + L1MC1 LINE L1 5703 5827 -506 207 100 0 0 chr1 237908830 237908860 -44284804 + (A)n Simple_repeat Simple_repeat 1 30 0 1199 133 68 13 chr1 237908871 237909105 -44284559 + L1MC1 LINE L1 5818 6064 -269 1700 143 0 0 chr1 237909179 237909437 -44284227 + L1MC1 LINE L1 6071 6328 -5 205 353 69 12 chr1 237910057 237910230 -44283434 - L2 LINE L2 -355 2959 2777 2824 157 19 8 chr1 237910256 237910735 -44282929 - MER66B LTR ERV1 -2 484 1 757 162 15 7 chr1 237911044 237911180 -44282484 + MLT1C LTR MaLR 331 467 0 825 217 25 0 chr1 237911182 237911385 -44282279 + Charlie4a DNA MER1_type 131 338 -170 321 26 0 0 chr1 237912182 237912220 -44281444 + (TG)n Simple_repeat Simple_repeat 2 39 0 201 39 0 0 chr1 237913098 237913124 -44280540 + (TGGGGG)n Simple_repeat Simple_repeat 5 30 0 1036 191 13 26 chr1 237913547 237913777 -44279887 + MLT1A2 LTR MaLR 5 231 -143 252 213 0 0 chr1 237913783 237913830 -44279834 + MIR SINE MIR 192 238 -24 194 245 122 0 chr1 237913800 237913849 -44279815 + L2 LINE L2 3254 3308 -5 * 2080 147 47 6 chr1 237914939 237915299 -44278365 - THE1C LTR MaLR 0 375 1 2143 77 7 4 chr1 237915992 237916265 -44277399 + AluSq SINE Alu 1 274 -39 1727 186 7 0 chr1 237916442 237916732 -44276932 - AluSx SINE Alu -20 292 1 26 50 0 0 chr1 237917730 237917770 -44275894 + AT_rich Low_complexity Low_complexity 1 40 0 625 299 106 34 chr1 237917793 237918236 -44275428 + L1MC/D LINE L1 5216 5687 -743 2496 159 24 9 chr1 237918236 237918658 -44275006 + MSTA LTR MaLR 1 428 0 2070 116 0 67 chr1 237919389 237919716 -44273948 - AluSq SINE Alu -8 305 1 21 0 0 0 chr1 237919851 237919872 -44273792 + AT_rich Low_complexity Low_complexity 1 21 0 405 373 5 36 chr1 237920121 237920314 -44273350 - MIR SINE MIR -56 206 20 656 191 0 0 chr1 237921310 237921420 -44272244 + FLAM_C SINE Alu 1 110 -33 231 167 0 0 chr1 237921452 237921494 -44272170 + CT-rich Low_complexity Low_complexity 2 43 0 920 159 41 0 chr1 237921494 237921639 -44272025 + FRAM SINE Alu 1 146 -30 378 0 0 0 chr1 237921642 237921684 -44271980 + (TAA)n Simple_repeat Simple_repeat 2 43 0 503 31 15 0 chr1 237921684 237921749 -44271915 + (GAA)n Simple_repeat Simple_repeat 2 67 0 387 367 44 6 chr1 237922117 237922275 -44271389 + MIR3 SINE MIR 19 182 -26 2508 77 3 0 chr1 237923773 237924084 -44269580 + AluSp SINE Alu 1 312 -1 3721 161 39 79 chr1 237924304 237924455 -44269209 + L1PA12 LINE L1 5213 5368 -800 2714 32 3 0 chr1 237924455 237924765 -44268899 + AluY SINE Alu 1 311 0 3721 161 39 79 chr1 237924765 237925604 -44268060 + L1PA12 LINE L1 5368 6165 -3 31 0 0 0 chr1 237925863 237925894 -44267770 + AT_rich Low_complexity Low_complexity 1 31 0 1423 147 124 23 chr1 237925930 237926188 -44267476 + AluJb SINE Alu 1 284 -28 477 0 0 0 chr1 237926188 237926241 -44267423 + (CA)n Simple_repeat Simple_repeat 2 54 0 287 85 21 0 chr1 237926241 237926288 -44267376 + (GA)n Simple_repeat Simple_repeat 1 48 0 396 321 72 58 chr1 237926632 237927046 -44266618 + L1MEd LINE L1 511 930 -5189 353 333 30 10 chr1 237927174 237927372 -44266292 + L1MEc LINE L1 216 417 -5979 * 806 292 128 30 chr1 237927365 237927815 -44265849 + L1MEc LINE L1 133 638 -5758 1370 85 144 0 chr1 237927815 237928016 -44265648 + MER30 DNA MER1_type 1 230 0 806 292 128 30 chr1 237928016 237928065 -44265599 + L1MEc LINE L1 638 681 -5715 3772 134 19 15 chr1 237928087 237928759 -44264905 - L1MB4 LINE L1 -1 6179 5505 1364 197 0 4 chr1 237929622 237929855 -44263809 + AluJo SINE Alu 1 232 -80 456 207 0 27 chr1 237929856 237929967 -44263697 - LTR2B LTR ERV1 0 490 383 266 79 0 0 chr1 237930094 237930132 -44263532 + LTR2B LTR ERV1 453 490 0 486 110 0 0 chr1 237930132 237930205 -44263459 + AluJo SINE Alu 230 302 -10 989 217 15 0 chr1 237930395 237930598 -44263066 - MER3 DNA MER1_type 0 209 4 1935 90 4 4 chr1 237931023 237931278 -44262386 + AluSg SINE Alu 48 302 -8 348 155 17 0 chr1 237931800 237931858 -44261806 + AluJo SINE Alu 221 279 -23 841 326 8 51 chr1 237932329 237932817 -44260847 + ERVL LTR ERVL 803 1269 -4495 3493 277 56 17 chr1 237932823 237933314 -44260350 + L1MEc LINE L1 23 493 -5903 1931 163 44 67 chr1 237933314 237933675 -44259989 + MSTB LTR MaLR 1 352 -74 1782 181 3 13 chr1 237933675 237933979 -44259685 - AluJb SINE Alu -11 301 1 1931 163 44 67 chr1 237933979 237934053 -44259611 + MSTB LTR MaLR 352 426 0 3493 277 56 17 chr1 237934053 237935017 -44258647 + L1MEc LINE L1 493 1535 -4861 868 137 4 0 chr1 237935018 237935169 -44258495 - THE1C LTR MaLR 0 375 237 3413 138 77 5 chr1 237935172 237935745 -44257919 - LTR18B LTR ERVL 0 614 1 3971 168 17 69 chr1 237935936 237936750 -44256914 - HERVL18 LTR ERVL -2556 3491 2720 * 11523 190 25 13 chr1 237936749 237938490 -44255174 - HERVL18 LTR ERVL -3595 2452 616 2136 73 0 11 chr1 237938490 237938763 -44254901 + AluSq SINE Alu 4 273 -40 11523 190 25 13 chr1 237938763 237939383 -44254281 - HERVL18 LTR ERVL -5431 616 5 3034 128 53 4 chr1 237939420 237939929 -44253735 - LTR18B LTR ERVL -76 538 5 1123 130 45 27 chr1 237939933 237940156 -44253508 - THE1C LTR MaLR -148 227 1 576 207 65 30 chr1 237940162 237940331 -44253333 + L1MEc LINE L1 1663 1837 -4559 300 302 31 0 chr1 237940430 237940526 -44253138 + ERVL LTR ERVL 1363 1461 -4303 1812 173 3 13 chr1 237940550 237940863 -44252801 + AluJb SINE Alu 1 310 -2 420 111 0 0 chr1 237940863 237940926 -44252738 + (GGGGA)n Simple_repeat Simple_repeat 1 63 0 369 301 35 23 chr1 237940936 237941109 -44252555 + ERVL LTR ERVL 1445 1619 -4035 715 244 83 19 chr1 237941132 237941420 -44252244 + ERVL LTR ERVL 2085 2391 -3094 264 339 52 0 chr1 237941465 237941657 -44252007 + ERVL LTR ERVL 2487 2688 -2797 1121 335 139 44 chr1 237941945 237942293 -44251371 - L2 LINE L2 -587 2727 2413 4121 84 19 0 chr1 237942293 237942862 -44250802 - LTR19B LTR ERV1 0 580 1 1121 335 139 44 chr1 237942862 237943397 -44250267 - L2 LINE L2 -901 2413 1930 2131 115 0 3 chr1 237943397 237943683 -44249981 + AluSg SINE Alu 1 285 -25 591 53 0 0 chr1 237943687 237943762 -44249902 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1121 335 139 44 chr1 237943762 237944647 -44249017 - L2 LINE L2 -1386 1928 787 475 240 27 87 chr1 237944934 237945117 -44248547 - MER5A DNA MER1_type -2 187 16 727 334 75 55 chr1 237946271 237946867 -44246797 + L3 LINE CR1 652 1259 -318 2442 46 3 33 chr1 237946960 237947265 -44246399 + AluY SINE Alu 1 296 -15 22 0 0 0 chr1 237947355 237947377 -44246287 + AT_rich Low_complexity Low_complexity 1 22 0 303 355 41 23 chr1 237947438 237947610 -44246054 - MER5B DNA MER1_type -3 175 1 481 317 50 0 chr1 237948339 237948500 -44245164 - MIR3 SINE MIR -7 201 33 1026 181 14 5 chr1 237950105 237950326 -44243338 - L1PA13 LINE L1 -1239 4907 4685 5657 106 10 32 chr1 237950328 237951583 -44242081 + L1PA13 LINE L1 4912 6151 -12 993 284 58 14 chr1 237951765 237952113 -44241551 - LTR16C LTR ERVL -8 483 121 370 261 94 22 chr1 237952492 237952630 -44241034 - L2 LINE L2 -6 3307 3160 2591 147 2 27 chr1 237952753 237952828 -44240836 + L1PB3 LINE L1 5708 5783 -371 1714 63 0 0 chr1 237952828 237953033 -44240631 + AluY SINE Alu 1 205 -106 2591 147 2 27 chr1 237953033 237953406 -44240258 + L1PB3 LINE L1 5783 6145 -9 240 354 94 0 chr1 237953450 237953546 -44240118 + L2 LINE L2 3168 3272 0 2245 113 7 0 chr1 237953642 237953952 -44239712 - AluSx SINE Alu 0 312 1 208 292 37 115 chr1 237954119 237954362 -44239302 - L2 LINE L2 -194 3078 2855 373 172 0 16 chr1 237954812 237954876 -44238788 + MER5B DNA MER1_type 3 65 -113 418 90 45 0 chr1 237954893 237954960 -44238704 - MADE1 DNA Mariner -2 78 9 264 275 72 0 chr1 237955067 237955136 -44238528 + MER5B DNA MER1_type 89 162 -16 343 217 108 12 chr1 237955212 237955295 -44238369 - MER5B DNA MER1_type -85 93 3 21 36 0 0 chr1 237955730 237955758 -44237906 + AT_rich Low_complexity Low_complexity 1 28 0 314 262 76 41 chr1 237956041 237956186 -44237478 - L1ME3A LINE L1 -236 5934 5785 279 220 60 40 chr1 237956193 237956293 -44237371 - L1ME3A LINE L1 -503 5659 5558 211 309 206 0 chr1 237956775 237956843 -44236821 + MER91A DNA MER1_type 65 146 -50 249 33 0 0 chr1 237957591 237957621 -44236043 + (CA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr1 237957632 237957653 -44236011 + (GA)n Simple_repeat Simple_repeat 2 22 0 318 189 0 0 chr1 237958158 237958211 -44235453 + FLAM_A SINE Alu 71 123 -10 28 0 0 0 chr1 237958211 237958239 -44235425 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr1 237958389 237958410 -44235254 + AT_rich Low_complexity Low_complexity 1 21 0 307 275 53 63 chr1 237960106 237960313 -44233351 - L1 LINE L1 -2827 3319 3115 620 323 33 31 chr1 237960331 237960904 -44232760 - L1 LINE L1 -3142 3004 2431 2960 186 48 36 chr1 237961030 237961746 -44231918 - L1MB8 LINE L1 0 6178 5455 357 95 14 27 chr1 237961903 237961977 -44231687 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 357 24 0 0 chr1 237961981 237962023 -44231641 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 306 95 35 chr1 237962101 237962974 -44230690 - L1MB8 LINE L1 -807 5339 4415 240 271 57 43 chr1 237963033 237963173 -44230491 - L1MB8 LINE L1 -2084 4062 3921 2411 70 0 0 chr1 237963174 237963475 -44230189 - AluY SINE Alu -10 301 1 1627 143 29 4 chr1 237963530 237963803 -44229861 + AluJo SINE Alu 24 303 -9 987 299 45 49 chr1 237964180 237964813 -44228851 - L2 LINE L2 0 3313 2690 331 306 27 19 chr1 237964918 237965179 -44228485 + L1MC4a LINE L1 4978 5240 -906 6119 214 95 35 chr1 237965265 237967209 -44226455 + L1MC4a LINE L1 5386 7447 -361 1529 226 126 30 chr1 237967212 237967672 -44225992 + MLT1F LTR MaLR 32 535 -7 1013 233 43 105 chr1 237967676 237968230 -44225434 + L1MC4 LINE L1 7521 8040 -2 222 213 0 0 chr1 237968347 237968394 -44225270 + (CATAG)n Simple_repeat Simple_repeat 4 50 0 372 176 133 25 chr1 237969659 237969773 -44223891 + MIR3 SINE MIR 73 184 -24 219 331 55 48 chr1 237970700 237970845 -44222819 - MER5A DNA MER1_type -5 184 39 577 286 205 20 chr1 237971098 237971611 -44222053 + L2 LINE L2 2710 3304 -9 2225 296 124 43 chr1 237971622 237972432 -44221232 + L2 LINE L2 1494 2237 -1076 432 0 0 0 chr1 237972432 237972480 -44221184 + (CA)n Simple_repeat Simple_repeat 2 49 0 2225 296 124 43 chr1 237972480 237973285 -44220379 + L2 LINE L2 2237 3262 -51 2218 154 45 39 chr1 237973312 237973754 -44219910 - MER65A LTR ERV1 0 445 1 281 171 14 14 chr1 237975464 237975534 -44218130 + L1MA10 LINE L1 6255 6324 -10 237 370 14 43 chr1 237976473 237976611 -44217053 - L2 LINE L2 -3 3269 3136 287 339 131 26 chr1 237976698 237977042 -44216622 - L2 LINE L2 -290 2982 2599 503 66 13 0 chr1 237978017 237978093 -44215571 - L1PA10 LINE L1 0 6168 6092 2339 106 3 0 chr1 237979298 237979609 -44214055 - AluSx SINE Alu 0 312 1 488 268 68 18 chr1 237980346 237980543 -44213121 - MIR SINE MIR -17 245 37 1558 94 40 13 chr1 237982618 237982842 -44210822 - MER30 DNA MER1_type 0 230 1 207 0 0 0 chr1 237984920 237984943 -44208721 + (CAA)n Simple_repeat Simple_repeat 2 24 0 344 312 51 7 chr1 237986161 237986299 -44207365 + MIR SINE MIR 6 149 -113 2127 142 0 0 chr1 237986345 237986647 -44207017 + AluY SINE Alu 1 302 -9 268 276 189 8 chr1 237990180 237990307 -44203357 + MER102b DNA MER1_type 188 337 -4 871 267 5 14 chr1 237991260 237991470 -44202194 - MIR SINE MIR -8 254 47 2634 111 6 0 chr1 237991477 237991839 -44201825 - THE1B LTR MaLR 0 364 1 1720 188 10 16 chr1 237992619 237992933 -44200731 + AluJo SINE Alu 1 312 0 860 147 0 22 chr1 237993356 237993492 -44200172 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr1 237993680 237993702 -44199962 + AT_rich Low_complexity Low_complexity 1 22 0 286 268 84 22 chr1 237994734 237994913 -44198751 - L1ME LINE L1 -376 5745 5556 442 248 173 47 chr1 237994942 237995260 -44198404 - L1ME LINE L1 -1313 4833 4476 325 304 124 95 chr1 237995324 237996318 -44197346 - L1M4 LINE L1 -1094 5052 4030 437 307 101 80 chr1 237996724 237997050 -44196614 - L2 LINE L2 -16 3256 2924 191 247 216 25 chr1 237997849 237998011 -44195653 - L2 LINE L2 -799 2515 2323 1917 97 4 0 chr1 237999300 237999559 -44194105 + L1PA7 LINE L1 5892 6151 -3 3457 239 95 113 chr1 238000000 238000162 -44193502 - L2 LINE L2 -135 3178 3015 2373 115 0 0 chr1 238000162 238000474 -44193190 + AluSx SINE Alu 1 312 0 3457 239 95 113 chr1 238000474 238001506 -44192158 - L2 LINE L2 -298 3015 1886 999 167 0 0 chr1 238001506 238001662 -44192002 - AluSg/x SINE Alu -10 302 147 3457 239 95 113 chr1 238001662 238002306 -44191358 - L2 LINE L2 -1427 1886 1232 230 356 102 19 chr1 238002325 238002541 -44191123 - MIR SINE MIR -10 252 19 2289 103 0 0 chr1 238002565 238002865 -44190799 + AluSc SINE Alu 1 300 -9 187 80 20 140 chr1 238003057 238003107 -44190557 + L2 LINE L2 3270 3313 0 2315 133 28 32 chr1 238004487 238004923 -44188741 - L1MB2 LINE L1 -1 6170 5737 1218 134 0 25 chr1 238004923 238005125 -44188539 - MSTA LTR MaLR 0 428 232 951 112 10 17 chr1 238005231 238005424 -44188240 - MSTA LTR MaLR -180 248 16 729 115 0 0 chr1 238005426 238005539 -44188125 - MSTA-int LTR MaLR -1538 113 1 2236 141 83 8 chr1 238005539 238005937 -44187727 - MSTA LTR MaLR 0 428 1 605 153 18 0 chr1 238005937 238006048 -44187616 - L1MB2 LINE L1 -430 5741 5629 745 307 72 45 chr1 238006385 238006829 -44186835 - MLT1K LTR MaLR -6 582 120 1169 209 5 0 chr1 238006829 238007044 -44186620 + MER20 DNA MER1_type 1 216 -3 745 307 72 45 chr1 238007044 238007127 -44186537 - MLT1K LTR MaLR -468 120 41 784 313 56 51 chr1 238007272 238007684 -44185980 - L2 LINE L2 -2 3311 2898 * 3242 301 50 12 chr1 238007678 238008803 -44184861 - L2 LINE L2 -1624 1690 524 882 181 6 0 chr1 238009009 238009186 -44184478 + L1MA6 LINE L1 5890 6067 -233 216 0 0 0 chr1 238009362 238009386 -44184278 + (CAA)n Simple_repeat Simple_repeat 1 24 0 25 83 0 0 chr1 238009484 238009544 -44184120 + AT_rich Low_complexity Low_complexity 1 60 0 1777 37 0 0 chr1 238009565 238009781 -44183883 - L1PA5 LINE L1 -1 6153 5938 313 26 0 0 chr1 238009782 238009821 -44183843 + L1PA5 LINE L1 5853 5891 -263 426 332 99 11 chr1 238009874 238010136 -44183528 + L2 LINE L2 2488 2772 -542 226 277 215 16 chr1 238011085 238011220 -44182444 + MIR SINE MIR 20 177 -55 396 272 39 50 chr1 238012367 238012547 -44181117 + MIR SINE MIR 35 212 -50 1356 208 51 75 chr1 238012720 238012944 -44180720 + L1MCa LINE L1 2089 2317 -4109 2268 116 3 0 chr1 238012944 238013255 -44180409 + AluSx SINE Alu 1 312 0 1356 208 51 75 chr1 238013255 238013989 -44179675 + L1MCa LINE L1 2317 3019 -3407 261 215 13 51 chr1 238013989 238014068 -44179596 + Charlie7 DNA MER1_type 108 183 -2429 910 268 17 59 chr1 238014125 238014584 -44179080 + Charlie7 DNA MER1_type 282 721 -1891 27 0 0 0 chr1 238014649 238014676 -44178988 + AT_rich Low_complexity Low_complexity 1 27 0 1789 219 52 6 chr1 238014919 238015395 -44178269 + L1ME1 LINE L1 5428 5925 -239 601 252 23 57 chr1 238015511 238015773 -44177891 + L1ME1 LINE L1 5909 6161 -5 370 338 95 7 chr1 238016290 238016438 -44177226 + MER5A DNA MER1_type 1 161 -28 262 143 0 0 chr1 238016744 238016786 -44176878 - 5S rRNA rRNA -79 42 1 246 294 157 15 chr1 238016792 238016996 -44176668 - L2 LINE L2 -222 3050 2818 410 270 88 0 chr1 238017504 238017641 -44176023 - MIR SINE MIR -60 202 54 2130 157 115 17 chr1 238017691 238018151 -44175513 - MLT1D LTR MaLR 0 505 1 2138 142 3 3 chr1 238018228 238018581 -44175083 + MER44D DNA MER2_type 381 605 0 332 289 49 23 chr1 238018660 238018926 -44174738 + L1M4 LINE L1 2346 2618 -3528 2017 150 40 9 chr1 238019167 238019494 -44174170 + MER1B DNA MER1_type 1 337 0 1800 145 3 37 chr1 238019526 238019823 -44173841 - AluSx SINE Alu -22 290 4 2153 112 3 3 chr1 238019920 238020215 -44173449 + AluSx SINE Alu 5 299 -13 1206 195 71 95 chr1 238021552 238022003 -44171661 - MLT1C LTR MaLR -5 462 23 4834 141 8 29 chr1 238022015 238022838 -44170826 + L1MC1 LINE L1 5523 6328 -5 871 208 48 5 chr1 238022878 238023085 -44170579 + L1MD2 LINE L1 6132 6347 -12 1791 134 17 0 chr1 238023130 238023420 -44170244 + LTR24 LTR ERV1 171 465 -2 1957 134 28 0 chr1 238024294 238024602 -44169062 + AluSq SINE Alu 1 316 0 669 47 0 0 chr1 238025086 238025171 -44168493 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 1966 151 7 7 chr1 238025288 238025630 -44168034 - AluJb SINE Alu 0 349 8 241 344 30 23 chr1 238026171 238026302 -44167362 - L3 LINE CR1 -212 1365 1234 271 300 126 26 chr1 238026470 238026740 -44166924 + L1ME4a LINE L1 5452 5748 -373 248 238 105 28 chr1 238026849 238026992 -44166672 + L1ME4a LINE L1 5781 5934 -187 1772 283 38 12 chr1 238027406 238027990 -44165674 - ERVL LTR ERVL -3825 1939 1341 583 256 22 27 chr1 238027991 238028184 -44165480 - MLT2E LTR ERVL -434 194 3 21 0 0 0 chr1 238028184 238028205 -44165459 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr1 238028228 238028257 -44165407 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 1557 38 0 0 chr1 238028273 238028511 -44165153 + (G)n Simple_repeat Simple_repeat 1 238 0 402 115 0 0 chr1 238028613 238028674 -44164990 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 699 270 42 45 chr1 238028674 238029100 -44164564 - L1M4 LINE L1 -1957 4189 3765 453 155 0 0 chr1 238029133 238029217 -44164447 - L1MB7 LINE L1 -18 6166 6083 1026 163 6 5 chr1 238029217 238029534 -44164130 + MLT1A1 LTR MaLR 1 365 0 232 204 0 0 chr1 238029534 238029583 -44164081 - L1MB5 LINE L1 -86 6088 6040 407 242 71 25 chr1 238029608 238029806 -44163858 - L1M4 LINE L1 -2445 3701 3495 352 264 23 0 chr1 238029861 238029948 -44163716 - L1MC4 LINE L1 -1339 6703 6615 322 237 0 43 chr1 238029901 238029994 -44163670 + L1MC4 LINE L1 6614 6702 -1340 * 316 226 21 65 chr1 238029993 238030086 -44163578 - L1MC4 LINE L1 -1339 6703 6615 * 323 299 0 0 chr1 238030046 238030133 -44163531 + L1MC4 LINE L1 6617 6703 -1339 1006 265 46 3 chr1 238030173 238030501 -44163163 - L1ME3 LINE L1 -34 6197 5856 372 244 120 25 chr1 238030523 238030765 -44162899 - L1ME3 LINE L1 -795 5420 5156 1767 151 18 25 chr1 238030767 238031051 -44162613 + AluJo SINE Alu 1 282 -30 3861 242 122 61 chr1 238031052 238033300 -44160364 - L1ME3 LINE L1 -1208 5007 2897 1370 196 79 59 chr1 238033300 238033758 -44159906 - MLT1C LTR MaLR 0 467 1 3861 242 122 61 chr1 238033758 238034466 -44159198 - L1ME3 LINE L1 -3318 2897 1914 2195 157 28 3 chr1 238034466 238034854 -44158810 - MER57A LTR ERV1 -4 399 2 3861 242 122 61 chr1 238034854 238034889 -44158775 - L1ME3 LINE L1 -4301 1914 1883 2187 157 13 47 chr1 238034926 238035373 -44158291 - MER54A LTR ERVL -2 899 468 382 277 77 50 chr1 238035499 238035789 -44157875 - L1ME3 LINE L1 -4587 1809 1528 1957 147 0 22 chr1 238035789 238036109 -44157555 - AluSq SINE Alu 0 313 1 382 277 77 50 chr1 238036109 238036438 -44157226 - L1ME3 LINE L1 -4868 1528 1021 1850 164 3 29 chr1 238036457 238036640 -44157024 - AluJb SINE Alu -4 308 135 240 35 0 0 chr1 238036640 238036669 -44156995 + (TA)n Simple_repeat Simple_repeat 2 30 0 1850 164 3 29 chr1 238036669 238036797 -44156867 - AluJb SINE Alu -177 135 5 336 333 39 63 chr1 238036909 238037116 -44156548 - L1ME3 LINE L1 -5394 811 610 26 0 0 0 chr1 238037577 238037603 -44156061 + AT_rich Low_complexity Low_complexity 1 26 0 234 253 96 0 chr1 238039119 238039202 -44154462 - MIR SINE MIR -19 243 153 1657 191 0 14 chr1 238039226 238039520 -44154144 - AluJb SINE Alu -22 290 1 2090 149 86 10 chr1 238039704 238040101 -44153563 - MSTA LTR MaLR 0 428 2 246 321 37 0 chr1 238040418 238040499 -44153165 - LTR33A LTR ERVL -365 158 75 293 247 11 65 chr1 238040692 238040785 -44152879 - MIR3 SINE MIR -37 171 84 180 349 38 19 chr1 238041365 238041471 -44152193 + MIR SINE MIR 44 151 -57 2084 125 0 3 chr1 238042222 238042517 -44151147 + AluSq SINE Alu 1 294 -19 359 165 0 46 chr1 238043921 238044030 -44149634 + CT-rich Low_complexity Low_complexity 2 105 0 457 342 69 4 chr1 238044105 238044336 -44149328 - L2 LINE L2 -5 3308 3063 280 316 0 0 chr1 238045150 238045229 -44148435 + L2 LINE L2 3235 3313 0 1074 158 0 0 chr1 238046252 238046416 -44147248 + AluJb SINE Alu 133 296 -16 420 153 14 0 chr1 238046422 238046494 -44147170 + AluSq/x SINE Alu 39 111 -192 274 333 0 0 chr1 238047151 238047235 -44146429 + L2 LINE L2 3189 3272 0 1060 165 0 0 chr1 238048252 238048416 -44145248 + AluJb SINE Alu 133 296 -16 531 160 11 0 chr1 238048422 238048516 -44145148 + AluSq/x SINE Alu 39 133 -179 14229 139 34 1 chr1 238050053 238052373 -44141291 + Tigger1 DNA MER2_type 24 2418 0 1461 201 61 79 chr1 238052373 238052816 -44140848 - MLT1C LTR MaLR -32 435 1 293 0 0 26 chr1 238053443 238053481 -44140183 + (TA)n Simple_repeat Simple_repeat 2 38 0 1687 186 0 3 chr1 238053580 238053875 -44139789 + AluJb SINE Alu 7 300 -12 21 0 0 0 chr1 238054347 238054368 -44139296 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr1 238054944 238054977 -44138687 + (CA)n Simple_repeat Simple_repeat 2 34 0 367 300 15 15 chr1 238055425 238055555 -44138109 - L3 LINE CR1 -212 1365 1236 296 248 17 43 chr1 238055928 238056045 -44137619 + L1ME LINE L1 5460 5573 -548 373 120 0 0 chr1 238056098 238056148 -44137516 - 5S rRNA rRNA -70 51 2 1835 161 3 7 chr1 238056285 238056576 -44137088 + AluJb SINE Alu 1 290 -22 2066 138 7 0 chr1 238056714 238057012 -44136652 + AluSx SINE Alu 1 300 -12 1844 173 3 0 chr1 238057220 238057503 -44136161 + AluSx SINE Alu 1 284 -28 224 294 112 70 chr1 238058213 238058315 -44135349 - MIR SINE MIR -19 243 147 1618 181 3 13 chr1 238058315 238058613 -44135051 - AluJb SINE Alu -17 295 1 224 294 112 70 chr1 238058613 238058724 -44134940 - MIR SINE MIR -115 147 21 1978 143 117 10 chr1 238058797 238059183 -44134481 - MSTA LTR MaLR 0 428 2 234 333 37 0 chr1 238059500 238059581 -44134083 - LTR33A LTR ERVL -365 158 75 313 237 11 65 chr1 238059773 238059866 -44133798 - MIR3 SINE MIR -37 171 84 2023 123 7 3 chr1 238061303 238061595 -44132069 + AluSq SINE Alu 1 293 -20 1654 194 3 3 chr1 238061909 238062203 -44131461 + AluJb SINE Alu 7 300 -12 243 0 0 0 chr1 238063256 238063283 -44130381 + (CA)n Simple_repeat Simple_repeat 2 28 0 376 269 23 23 chr1 238063731 238063861 -44129803 - L3 LINE CR1 -212 1365 1236 375 187 0 11 chr1 238064329 238064420 -44129244 + L1MA6 LINE L1 6211 6300 0 2348 53 0 3 chr1 238064563 238064870 -44128794 + AluY SINE Alu 1 306 0 943 336 109 27 chr1 238065046 238066007 -44127657 - L2 LINE L2 -5 3308 2275 368 284 0 0 chr1 238066096 238066184 -44127480 - MIR SINE MIR -172 90 3 275 224 158 36 chr1 238066517 238066682 -44126982 + LTR33A LTR ERVL 322 506 -17 246 321 46 69 chr1 238067045 238067176 -44126488 + L2 LINE L2 3136 3263 -9 2298 126 24 21 chr1 238067986 238068360 -44125304 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr1 238070159 238070187 -44123477 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr1 238070479 238070527 -44123137 + AT_rich Low_complexity Low_complexity 1 48 0 27 0 0 0 chr1 238072122 238072149 -44121515 + AT_rich Low_complexity Low_complexity 1 27 0 2222 94 10 0 chr1 238072527 238072835 -44120829 + L1P3 LINE L1 5433 5743 -429 873 319 27 3 chr1 238073006 238073301 -44120363 - L1MEc LINE L1 -5906 490 189 1985 142 0 3 chr1 238074142 238074430 -44119234 + AluSx SINE Alu 1 287 -25 6621 68 7 2 chr1 238076508 238077376 -44116288 - L1PA7 LINE L1 -16 6138 5267 28334 103 9 9 chr1 238077476 238081749 -44111915 + L1P LINE L1 1024 5297 -849 286 336 98 0 chr1 238082356 238082478 -44111186 + MIR SINE MIR 18 151 -111 553 225 29 0 chr1 238083060 238083198 -44110466 - Charlie1 DNA MER1_type 0 2761 2620 * 751 262 9 37 chr1 238083192 238083406 -44110258 - Charlie1 DNA MER1_type -2534 227 20 27 0 0 0 chr1 238083724 238083751 -44109913 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr1 238084833 238084862 -44108802 + AT_rich Low_complexity Low_complexity 1 29 0 201 129 0 0 chr1 238085317 238085348 -44108316 + (TG)n Simple_repeat Simple_repeat 2 32 0 3544 146 8 1 chr1 238085697 238086313 -44107351 + HSMAR2 DNA Mariner 4 657 -645 393 100 0 0 chr1 238086570 238086620 -44107044 - 5S rRNA rRNA -70 51 2 1902 157 0 7 chr1 238086757 238087050 -44106614 + AluJb SINE Alu 1 291 -21 2095 115 0 0 chr1 238087190 238087469 -44106195 + AluSx SINE Alu 1 279 -33 212 0 36 0 chr1 238087471 238087499 -44106165 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1848 160 11 0 chr1 238087709 238087990 -44105674 + AluSx SINE Alu 1 284 -28 421 291 53 35 chr1 238088732 238088959 -44104705 - MIR SINE MIR -29 233 3 189 233 47 0 chr1 238089007 238089050 -44104614 - L3b LINE CR1 -4 1579 1535 23 33 0 0 chr1 238089068 238089098 -44104566 + AT_rich Low_complexity Low_complexity 1 30 0 536 216 0 0 chr1 238089101 238089198 -44104466 - FRAM SINE Alu -23 153 57 1065 189 119 51 chr1 238089714 238090105 -44103559 + MER66B LTR ERV1 108 481 -5 194 278 74 0 chr1 238090354 238090408 -44103256 + MIR SINE MIR 43 100 -108 180 111 0 0 chr1 238090701 238090728 -44102936 + (T)n Simple_repeat Simple_repeat 1 27 0 247 280 0 43 chr1 238091328 238091421 -44102243 + L1MC4 LINE L1 6615 6703 -1339 247 215 43 0 chr1 238091430 238091523 -44102141 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 270 266 0 43 chr1 238091531 238091625 -44102039 + L1MC4 LINE L1 6614 6703 -1339 229 242 0 53 chr1 238091609 238091704 -44101960 - L1MC4 LINE L1 -1339 6703 6614 * 219 139 0 0 chr1 238091709 238091745 -44101919 + (TA)n Simple_repeat Simple_repeat 2 37 0 564 224 87 16 chr1 238092650 238092833 -44100831 - L2 LINE L2 0 3313 3118 2492 251 110 22 chr1 238092911 238093813 -44099851 - L2 LINE L2 -662 2652 1672 259 290 29 14 chr1 238094547 238094616 -44099048 + L2 LINE L2 3203 3272 0 209 260 0 0 chr1 238095372 238095422 -44098242 + GA-rich Low_complexity Low_complexity 2 51 0 775 167 8 0 chr1 238096142 238096268 -44097396 + FLAM_C SINE Alu 1 127 -16 1796 168 10 3 chr1 238096392 238096411 -44097253 - AluJb SINE Alu 0 312 295 216 0 0 0 chr1 238096411 238096435 -44097229 + (TG)n Simple_repeat Simple_repeat 1 24 0 1796 168 10 3 chr1 238096435 238096725 -44096939 - AluJb SINE Alu -17 295 1 1374 214 77 55 chr1 238096774 238097231 -44096433 - MLT1C LTR MaLR 0 467 1 746 148 0 30 chr1 238097907 238098042 -44095622 + FLAM_C SINE Alu 3 133 -10 1678 116 40 8 chr1 238098455 238098734 -44094930 - AluSx SINE Alu 0 312 26 29 28 0 0 chr1 238099294 238099330 -44094334 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 238100741 238100763 -44092901 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr1 238100830 238100870 -44092794 + AT_rich Low_complexity Low_complexity 1 40 0 371 115 0 0 chr1 238101065 238101117 -44092547 + L1M3 LINE L1 5633 5684 -499 24 32 0 0 chr1 238101447 238101478 -44092186 + AT_rich Low_complexity Low_complexity 1 31 0 573 325 61 16 chr1 238101627 238101873 -44091791 + MIR SINE MIR 6 262 0 799 282 52 0 chr1 238102308 238102521 -44091143 + MER58A DNA MER1_type 1 224 0 773 268 62 65 chr1 238102766 238103372 -44090292 - L1MC4a LINE L1 -859 5438 5289 2330 84 0 0 chr1 238103789 238104086 -44089578 + AluSc SINE Alu 1 297 -12 4039 196 24 6 chr1 238104238 238105085 -44088579 - L1MB4 LINE L1 0 6180 5319 447 198 0 0 chr1 238105094 238105180 -44088484 - L1MB4 LINE L1 -1684 4462 4377 43 81 0 0 chr1 238105388 238105487 -44088177 + AT_rich Low_complexity Low_complexity 1 99 0 193 92 46 31 chr1 238105655 238105720 -44087944 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 547 189 17 80 chr1 238105806 238105851 -44087813 - Charlie1 DNA MER1_type -5 2756 2710 2283 73 3 3 chr1 238105851 238106177 -44087487 - AluSp SINE Alu 0 326 1 547 189 17 80 chr1 238106177 238106305 -44087359 - Charlie1 DNA MER1_type -51 2710 2593 264 91 0 0 chr1 238106419 238106463 -44087201 + (TA)n Simple_repeat Simple_repeat 1 44 0 182 125 0 25 chr1 238107240 238107280 -44086384 + (TG)n Simple_repeat Simple_repeat 2 40 0 3213 65 2 0 chr1 238107890 238108303 -44085361 - L1PA7 LINE L1 -2 6152 5739 1044 61 0 0 chr1 238108305 238108437 -44085227 + L1PA7 LINE L1 5602 5733 -422 404 217 0 0 chr1 238108428 238108511 -44085153 - L1MB4 LINE L1 -2561 3585 3503 * 236 29 0 0 chr1 238109686 238109721 -44083943 + Alu SINE Alu 270 304 -4 2164 98 10 0 chr1 238109767 238110062 -44083602 - AluY SINE Alu -13 298 1 22 0 0 0 chr1 238110163 238110185 -44083479 + AT_rich Low_complexity Low_complexity 1 22 0 196 355 36 36 chr1 238110614 238110724 -44082940 - MIR SINE MIR -71 137 28 387 272 121 35 chr1 238162401 238162574 -44031090 - MER5A DNA MER1_type 0 189 2 2390 73 20 0 chr1 238162732 238163032 -44030632 + AluSc SINE Alu 3 308 -1 2234 108 20 0 chr1 238163067 238163373 -44030291 + AluSx SINE Alu 1 312 0 2061 112 0 4 chr1 238164957 238165233 -44028431 + AluSq SINE Alu 1 275 -38 460 331 115 44 chr1 238165245 238165629 -44028035 + L1ME4a LINE L1 5452 5862 -259 21 0 0 0 chr1 238165734 238165755 -44027909 + AT_rich Low_complexity Low_complexity 1 21 0 308 187 57 11 chr1 238166437 238166530 -44027134 - MIR SINE MIR -61 147 57 25 31 0 0 chr1 238167225 238167257 -44026407 + AT_rich Low_complexity Low_complexity 1 32 0 1877 156 0 10 chr1 238167265 238167553 -44026111 + AluSx SINE Alu 1 285 -27 459 0 0 0 chr1 238167553 238167604 -44026060 + (CA)n Simple_repeat Simple_repeat 2 52 0 1447 404 0 0 chr1 238167892 238168204 -44025460 - AluSx SINE Alu 0 312 1 2140 192 87 88 chr1 238169467 238170195 -44023469 - LTR8A LTR ERV1 0 727 1 2170 128 0 6 chr1 238170734 238171046 -44022618 + AluSq SINE Alu 1 310 -3 629 276 75 22 chr1 238171125 238171393 -44022271 + L2 LINE L2 3032 3313 0 687 221 0 0 chr1 238171608 238171730 -44021934 + FLAM_A SINE Alu 1 122 -11 1177 241 9 25 chr1 238171741 238172057 -44021607 - MLT1A1 LTR MaLR -50 315 5 287 333 58 69 chr1 238172429 238172618 -44021046 - MIR SINE MIR -56 206 20 478 289 77 19 chr1 238173749 238173905 -44019759 + MIR SINE MIR 2 166 -96 1095 198 37 5 chr1 238175261 238175478 -44018186 + MER58A DNA MER1_type 1 224 0 2453 56 3 35 chr1 238176484 238176803 -44016861 + AluY SINE Alu 1 309 -2 21 36 0 0 chr1 238177223 238177251 -44016413 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 238177290 238177314 -44016350 + AT_rich Low_complexity Low_complexity 1 24 0 187 226 38 19 chr1 238177536 238177589 -44016075 - L2 LINE L2 -2 3270 3217 3396 65 5 7 chr1 238177728 238178177 -44015487 - LTR7 LTR ERV1 -2 448 1 7369 92 8 2 chr1 238179089 238180052 -44013612 - LTR5 LTR ERVK 0 969 1 17988 46 5 1 chr1 238180052 238182336 -44011328 - HERVK LTR ERVK 0 7243 4951 6408 62 2 1 chr1 238182314 238183268 -44010396 - HERVK LTR ERVK -4528 2715 1728 * 289 265 121 8 chr1 238183773 238183905 -44009759 - L1ME4a LINE L1 -45 6076 5930 2238 68 0 55 chr1 238184101 238184411 -44009253 - AluY SINE Alu -18 293 1 498 138 12 0 chr1 238185327 238185407 -44008257 - AluJb SINE Alu -21 291 211 180 299 103 26 chr1 238185508 238185625 -44008039 + MIR3 SINE MIR 74 199 -9 2471 75 3 3 chr1 238185984 238186290 -44007374 - AluSc SINE Alu -3 306 1 573 219 0 32 chr1 238187125 238187248 -44006416 + FRAM SINE Alu 28 146 -30 4538 236 108 71 chr1 238187441 238188330 -44005334 - L1MEd LINE L1 -1383 4746 3891 206 32 32 0 chr1 238188330 238188361 -44005303 + (TG)n Simple_repeat Simple_repeat 1 32 0 4538 236 108 71 chr1 238188361 238189575 -44004089 - L1MEd LINE L1 -2238 3891 2724 1536 181 93 84 chr1 238189575 238190038 -44003626 - MLT1C LTR MaLR 0 467 1 4538 236 108 71 chr1 238190038 238190792 -44002872 - L1MEd LINE L1 -3405 2724 1831 2451 165 25 0 chr1 238190792 238191185 -44002479 - MER57A LTR ERV1 0 403 1 4538 236 108 71 chr1 238191185 238191239 -44002425 - L1MEd LINE L1 -4298 1831 1780 2336 167 5 59 chr1 238191264 238191749 -44001915 - MER54A LTR ERVL -1 900 236 256 359 14 7 chr1 238191843 238191988 -44001676 - L1MEd LINE L1 -4587 1723 1578 342 248 86 19 chr1 238191993 238192121 -44001543 - L1MEd LINE L1 -4867 1252 1223 1798 142 4 0 chr1 238192121 238192388 -44001276 - AluSq SINE Alu -45 268 1 342 248 86 19 chr1 238192388 238192525 -44001139 - L1MEd LINE L1 -4896 1223 1097 238 294 104 75 chr1 238194014 238194101 -43999563 - MIR SINE MIR -35 227 144 1717 181 0 13 chr1 238194101 238194400 -43999264 - AluJb SINE Alu -17 295 1 238 294 104 75 chr1 238194400 238194513 -43999151 - MIR SINE MIR -118 144 21 300 254 0 68 chr1 238194516 238194586 -43999078 - LTR33A LTR ERVL -6 517 457 2292 139 108 8 chr1 238194586 238194975 -43998689 - MSTA LTR MaLR 0 428 1 300 254 0 68 chr1 238194975 238195022 -43998642 - LTR33A LTR ERVL -66 457 408 315 237 11 65 chr1 238195583 238195676 -43997988 - MIR3 SINE MIR -37 171 84 198 91 0 0 chr1 238196934 238196967 -43996697 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 202 11 22 chr1 238198533 238198622 -43995042 + CT-rich Low_complexity Low_complexity 2 89 0 487 316 77 26 chr1 238198702 238198936 -43994728 - L2 LINE L2 -5 3308 3063 222 313 0 48 chr1 238199739 238199822 -43993842 + L2 LINE L2 3235 3313 0 14455 140 30 14 chr1 238200993 238201773 -43991891 + Tigger1 DNA MER2_type 24 790 -1628 1705 134 28 4 chr1 238201773 238202027 -43991637 + AluSq SINE Alu 1 260 -53 14455 140 30 14 chr1 238202027 238202670 -43990994 + Tigger1 DNA MER2_type 790 1421 -997 1846 157 3 0 chr1 238202670 238202956 -43990708 + AluSg SINE Alu 24 310 0 14455 140 30 14 chr1 238202956 238203889 -43989775 + Tigger1 DNA MER2_type 1421 2418 0 1551 166 71 104 chr1 238203889 238204339 -43989325 - MLT1C LTR MaLR -32 435 1 300 250 0 92 chr1 238204940 238205060 -43988604 + L1MCa LINE L1 1995 2103 -4323 1797 166 7 3 chr1 238205116 238205412 -43988252 + AluJb SINE Alu 5 301 -11 2116 132 0 0 chr1 238206318 238206622 -43987042 + AluSx SINE Alu 1 304 -8 315 0 0 0 chr1 238206758 238206793 -43986871 + (CA)n Simple_repeat Simple_repeat 2 36 0 263 330 17 9 chr1 238207237 238207352 -43986312 - L3 LINE CR1 -212 1365 1250 281 248 16 50 chr1 238207731 238207852 -43985812 + L1ME LINE L1 5460 5576 -545 365 140 0 0 chr1 238207901 238207951 -43985713 - 5S rRNA rRNA -70 51 2 2056 134 0 7 chr1 238208092 238208384 -43985280 + AluJb SINE Alu 1 290 -22 1950 158 13 3 chr1 238208524 238208827 -43984837 + AluSx SINE Alu 1 306 -6 1770 160 7 0 chr1 238209034 238209315 -43984349 + AluJb SINE Alu 2 284 -28 185 283 0 0 chr1 238210072 238210125 -43983539 - MIR SINE MIR -44 218 166 468 228 118 8 chr1 238210394 238210521 -43983143 + MER41A LTR ERV1 163 303 -251 * 904 154 84 172 chr1 238210496 238210595 -43983069 + MER66A LTR ERV1 169 275 -203 1999 141 26 7 chr1 238210595 238210901 -43982763 + AluSx SINE Alu 1 312 0 904 154 84 172 chr1 238210901 238211133 -43982531 + MER66A LTR ERV1 275 471 -7 361 224 77 91 chr1 238212394 238212537 -43981127 - LTR27 LTR ERV1 0 636 496 2363 228 39 32 chr1 238212562 238213505 -43980159 - LTR27 LTR ERV1 -67 953 1 1735 165 49 0 chr1 238214680 238214965 -43978699 - AluJo SINE Alu -13 299 1 236 254 21 148 chr1 238215047 238215283 -43978381 - L2 LINE L2 -27 3286 3081 21 0 0 0 chr1 238216144 238216165 -43977499 + AT_rich Low_complexity Low_complexity 1 21 0 1924 137 0 4 chr1 238217396 238217673 -43975991 - AluSx SINE Alu -23 289 14 4689 10 0 4 chr1 238217731 238218235 -43975429 + L1PA2 LINE L1 5652 6153 -2 21 36 0 0 chr1 238218236 238218264 -43975400 + AT_rich Low_complexity Low_complexity 1 28 0 537 208 21 0 chr1 238218402 238218498 -43975166 + AluJ/FLAM SINE Alu 2 99 -213 1330 195 16 4 chr1 238218604 238218855 -43974809 + AluJb SINE Alu 31 284 -28 240 35 0 0 chr1 238218855 238218884 -43974780 + (CA)n Simple_repeat Simple_repeat 2 30 0 565 234 69 34 chr1 238218893 238219068 -43974596 - MIR SINE MIR -70 192 12 268 318 118 55 chr1 238220279 238220331 -43973333 + L1ME LINE L1 5385 5432 -689 8339 13 0 0 chr1 238220331 238221765 -43971899 - L1PA2 LINE L1 -4 6151 4717 268 318 118 55 chr1 238221765 238222093 -43971571 + L1ME LINE L1 5432 5789 -332 2091 99 25 0 chr1 238222294 238222576 -43971088 + AluSc SINE Alu 9 297 -12 385 266 91 28 chr1 238223223 238223366 -43970298 - MIR SINE MIR -91 171 20 22 0 0 0 chr1 238224036 238224058 -43969606 + AT_rich Low_complexity Low_complexity 1 22 0 1924 150 0 3 chr1 238224075 238224361 -43969303 + AluSx SINE Alu 1 285 -27 243 61 0 0 chr1 238224361 238224394 -43969270 + (CA)n Simple_repeat Simple_repeat 2 34 0 2231 105 7 0 chr1 238224653 238224947 -43968717 - AluSx SINE Alu -16 296 1 2192 114 3 3 chr1 238225140 238225439 -43968225 + AluSg SINE Alu 1 299 -11 2404 51 10 7 chr1 238225842 238226138 -43967526 - AluY SINE Alu -14 297 1 22 0 0 0 chr1 238226144 238226166 -43967498 + AT_rich Low_complexity Low_complexity 1 22 0 2544 184 76 109 chr1 238226814 238227566 -43966098 - LTR8A LTR ERV1 0 727 1 2210 106 3 3 chr1 238228104 238228415 -43965249 + AluSq SINE Alu 1 311 -2 606 241 95 66 chr1 238228496 238228770 -43964894 + L2 LINE L2 3032 3313 0 932 192 110 121 chr1 238228910 238228989 -43964675 - MLT1A1 LTR MaLR 0 365 287 795 180 0 0 chr1 238228989 238229111 -43964553 + FLAM_A SINE Alu 1 122 -11 932 192 110 121 chr1 238229111 238229396 -43964268 - MLT1A1 LTR MaLR -78 287 5 42341 48 22 6 chr1 238229602 238235653 -43958011 + L1PA2 LINE L1 3 6155 0 28 48 0 0 chr1 238235657 238235699 -43957965 + AT_rich Low_complexity Low_complexity 1 42 0 2844 19 0 0 chr1 238236356 238236667 -43956997 + AluYa5 SINE Alu 1 311 0 270 248 146 29 chr1 238237950 238238087 -43955577 - L1ME4a LINE L1 -39 6082 5930 2144 108 24 0 chr1 238238278 238238574 -43955090 - AluY SINE Alu -8 303 1 413 138 88 0 chr1 238239461 238239541 -43954123 - AluJb SINE Alu -15 297 211 3743 133 32 13 chr1 238239701 238240308 -43953356 + LTR9B LTR ERV1 1 622 -22 5892 63 33 13 chr1 238240308 238241073 -43952591 - LTR17 LTR ERV1 0 780 1 3743 133 32 13 chr1 238241073 238241097 -43952567 + LTR9B LTR ERV1 622 644 0 446 165 41 52 chr1 238241097 238241194 -43952470 + HUERS-P3b LTR ERV1 1 96 -7322 765 109 109 7 chr1 238241197 238241334 -43952330 + HUERS-P3b LTR ERV1 409 559 -6859 6414 109 23 7 chr1 238241347 238243138 -43950526 + HUERS-P3b LTR ERV1 750 2642 -4776 1977 181 81 5 chr1 238243138 238243548 -43950116 - LTR8 LTR ERV1 -250 441 1 4848 95 38 52 chr1 238243548 238244361 -43949303 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 17796 104 12 18 chr1 238244352 238247065 -43946599 + HUERS-P3b LTR ERV1 4713 7409 -9 4055 129 17 3 chr1 238247075 238247710 -43945954 + LTR9B LTR ERV1 1 644 0 21 36 0 0 chr1 238248908 238248936 -43944728 + AT_rich Low_complexity Low_complexity 1 28 0 428 276 36 23 chr1 238249638 238249859 -43943805 + L1MC4a LINE L1 5690 5913 -1895 783 282 52 0 chr1 238250104 238250317 -43943347 - MER58A DNA MER1_type 0 224 1 563 314 45 18 chr1 238250778 238250998 -43942666 - MIR SINE MIR -31 231 6 24 32 0 0 chr1 238251147 238251178 -43942486 + AT_rich Low_complexity Low_complexity 1 31 0 2047 156 34 23 chr1 238251509 238252012 -43941652 - L1M3 LINE L1 -497 5683 5174 1016 226 121 8 chr1 238252027 238252292 -43941372 - MLT1F1 LTR MaLR -272 295 1 264 295 114 10 chr1 238252952 238253250 -43940414 + L1ME LINE L1 4318 4646 -1500 701 183 10 1 chr1 238253330 238253482 -43940182 - L1MA7 LINE L1 -184 5997 5839 384 325 67 18 chr1 238254062 238254403 -43939261 - L1ME LINE L1 -496 5625 5268 2062 121 51 53 chr1 238254865 238255101 -43938563 + L1MA7 LINE L1 5879 6114 -177 1703 195 19 3 chr1 238255101 238255408 -43938256 + AluJb SINE Alu 1 312 0 2062 121 51 53 chr1 238255408 238255456 -43938208 + L1MA7 LINE L1 6114 6161 -130 306 0 0 0 chr1 238255456 238255490 -43938174 + (CA)n Simple_repeat Simple_repeat 1 34 0 2062 121 51 53 chr1 238255490 238255618 -43938046 + L1MA7 LINE L1 6161 6291 0 1603 236 97 21 chr1 238256081 238256556 -43937108 - MLT1J LTR MaLR 0 511 1 388 316 26 0 chr1 238257456 238257573 -43936091 - L3 LINE CR1 -212 1365 1246 511 271 51 8 chr1 238258048 238258284 -43935380 + L1ME LINE L1 5506 5751 -370 21 0 0 0 chr1 238259156 238259177 -43934487 + AT_rich Low_complexity Low_complexity 1 21 0 391 282 8 0 chr1 238259997 238260114 -43933550 - MIR SINE MIR -56 206 89 197 193 0 18 chr1 238260344 238260401 -43933263 + (TA)n Simple_repeat Simple_repeat 2 57 0 1692 178 4 0 chr1 238260438 238260745 -43932919 - AluJo SINE Alu 0 313 6 1866 111 34 0 chr1 238260919 238261216 -43932448 - L1MA1 LINE L1 -1 6301 5995 205 274 0 20 chr1 238261568 238261619 -43932045 + MIR SINE MIR 16 65 -143 2048 222 31 47 chr1 238262724 238263792 -43929872 - LTR27 LTR ERV1 0 1735 3 1848 163 37 0 chr1 238265002 238265297 -43928367 - AluJo SINE Alu -6 306 1 272 231 24 173 chr1 238265364 238265619 -43928045 - L2 LINE L2 -16 3297 3081 27 29 0 0 chr1 238266637 238266671 -43926993 + AT_rich Low_complexity Low_complexity 1 34 0 599 146 9 0 chr1 238266858 238266968 -43926696 - L1M LINE L1 -745 5429 5319 419 198 0 0 chr1 238266977 238267063 -43926601 - L1 LINE L1 -1684 4462 4377 43 81 0 0 chr1 238267271 238267370 -43926294 + AT_rich Low_complexity Low_complexity 1 99 0 204 118 35 35 chr1 238267517 238267602 -43926062 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 505 189 17 80 chr1 238267688 238267733 -43925931 - Charlie1 DNA MER1_type -5 2756 2710 2304 66 3 3 chr1 238267733 238268059 -43925605 - AluSp SINE Alu 0 326 1 505 189 17 80 chr1 238268059 238268187 -43925477 - Charlie1 DNA MER1_type -51 2710 2593 303 96 0 0 chr1 238268299 238268351 -43925313 + (TA)n Simple_repeat Simple_repeat 1 52 0 182 125 0 25 chr1 238269128 238269168 -43924496 + (TG)n Simple_repeat Simple_repeat 2 40 0 5633 58 3 3 chr1 238269778 238270531 -43923133 - L1PA7 LINE L1 -2 6152 5400 28450 102 9 13 chr1 238270633 238275164 -43918500 - L1PA7 LINE L1 -755 5391 879 1576 126 40 8 chr1 238276027 238276274 -43917390 + AluSx SINE Alu 14 268 -44 16542 49 9 1 chr1 238276374 238278513 -43915151 - L1P LINE L1 -3989 2157 1 180 277 48 24 chr1 238278975 238279058 -43914606 + MIR3 SINE MIR 82 166 -42 2266 84 0 3 chr1 238279787 238280073 -43913591 - AluY SINE Alu -12 299 15 2190 101 7 0 chr1 238280138 238280425 -43913239 - AluSg SINE Alu -20 290 2 482 224 20 34 chr1 238281000 238281147 -43912517 + Charlie4 DNA MER1_type 1816 1960 -1 3310 78 13 0 chr1 238281151 238281599 -43912065 + L1PA13 LINE L1 5709 6162 -1 260 340 52 13 chr1 238281692 238281845 -43911819 + L2 LINE L2 217 375 -2939 871 224 129 1 chr1 238281932 238282348 -43911316 - MLT1D LTR MaLR -7 498 2 259 102 0 41 chr1 238282389 238282438 -43911226 - L1MA6 LINE L1 -2 6298 6252 * 4266 156 16 3 chr1 238282434 238283309 -43910355 + L1MA6 LINE L1 5170 6056 -244 413 324 121 8 chr1 238283435 238283691 -43909973 + L2 LINE L2 2488 2772 -542 244 285 189 20 chr1 238284647 238284819 -43908845 + MIR SINE MIR 28 225 -37 353 283 44 56 chr1 238285772 238285952 -43907712 + MIR SINE MIR 35 212 -50 1668 184 59 39 chr1 238286146 238286372 -43907292 + L1ME2 LINE L1 2087 2307 -4222 2094 123 20 0 chr1 238286372 238286673 -43906991 + AluSx SINE Alu 1 307 -5 1668 184 59 39 chr1 238286673 238286891 -43906773 + L1ME2 LINE L1 2307 2580 -3949 693 252 35 93 chr1 238287192 238287644 -43906020 + Charlie7 DNA MER1_type 296 721 -1891 2362 208 34 75 chr1 238287979 238288738 -43904926 + L1ME2 LINE L1 5708 6435 -9 455 301 72 20 chr1 238289258 238289411 -43904253 + MER5A DNA MER1_type 1 161 -28 200 250 73 73 chr1 238289417 238289541 -43904123 - L2 LINE L2 0 3313 3190 327 93 0 0 chr1 238289713 238289756 -43903908 - 5S rRNA rRNA -78 43 1 183 312 139 28 chr1 238289756 238289971 -43903693 - L2 LINE L2 -216 3056 2818 251 122 122 0 chr1 238289980 238290029 -43903635 + L1MCa LINE L1 3468 3522 -2904 2172 152 24 9 chr1 238290674 238291003 -43902661 + MER1B DNA MER1_type 1 334 -3 522 173 0 0 chr1 238291035 238291116 -43902548 - AluSx SINE Alu -13 297 217 213 39 0 0 chr1 238292085 238292111 -43901553 + (TA)n Simple_repeat Simple_repeat 1 26 0 237 228 316 31 chr1 238292155 238292348 -43901316 - L1ME LINE L1 -225 5896 5649 24 32 0 0 chr1 238293176 238293207 -43900457 + GC_rich Low_complexity Low_complexity 1 31 0 1519 126 5 5 chr1 238293810 238294024 -43899640 - AluSx SINE Alu -98 214 1 2028 102 68 3 chr1 238294113 238294406 -43899258 + AluSx SINE Alu 1 312 0 497 242 47 32 chr1 238295741 238295957 -43897707 - MLT1C LTR MaLR -5 385 272 879 175 40 50 chr1 238296121 238296173 -43897491 - MLT1C LTR MaLR -236 231 180 2135 80 22 51 chr1 238296173 238296484 -43897180 - AluY SINE Alu -9 302 1 879 175 40 50 chr1 238296484 238296631 -43897033 - MLT1C LTR MaLR -287 180 34 5153 144 11 25 chr1 238296636 238297471 -43896193 + L1MC1 LINE L1 5506 6328 -5 1018 215 19 5 chr1 238297513 238297722 -43895942 + L1MD2 LINE L1 6132 6343 -16 2920 137 43 2 chr1 238297805 238298251 -43895413 + LTR24 LTR ERV1 4 467 0 1803 77 0 13 chr1 238299107 238299327 -43894337 + L1PA7 LINE L1 5925 6143 -11 195 42 0 0 chr1 238299327 238299351 -43894313 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1803 77 0 13 chr1 238299351 238299363 -43894301 + L1PA7 LINE L1 6143 6154 0 1996 113 47 4 chr1 238299369 238299643 -43894021 + AluSq SINE Alu 3 288 -25 909 123 35 0 chr1 238300139 238300310 -43893354 + CT-rich Low_complexity Low_complexity 4 180 0 1705 168 7 7 chr1 238300335 238300615 -43893049 - AluJo SINE Alu -32 280 1 240 271 24 0 chr1 238300644 238300729 -43892935 + (CATA)n Simple_repeat Simple_repeat 1 87 0 267 328 30 23 chr1 238301137 238301268 -43892396 - L3 LINE CR1 -212 1365 1234 414 291 130 23 chr1 238301444 238301705 -43891959 + L1ME4a LINE L1 5460 5748 -373 289 219 80 20 chr1 238301807 238301956 -43891708 + L1ME4a LINE L1 5773 5933 -188 22 80 0 0 chr1 238302271 238302321 -43891343 + AT_rich Low_complexity Low_complexity 1 50 0 1011 273 26 22 chr1 238302383 238302694 -43890970 - ERVL LTR ERVL -3825 1939 1628 1006 184 6 6 chr1 238302800 238302979 -43890685 + AluJb SINE Alu 129 307 -5 267 227 227 0 chr1 238303292 238303367 -43890297 + L2 LINE L2 3213 3304 -9 338 294 67 22 chr1 238303494 238303674 -43889990 + L2 LINE L2 2890 3077 -236 1081 152 4 78 chr1 238304202 238304416 -43889248 + AluJb SINE Alu 86 283 -29 408 20 0 0 chr1 238304416 238304465 -43889199 + (CA)n Simple_repeat Simple_repeat 2 50 0 1081 152 4 78 chr1 238304465 238304480 -43889184 + AluJb SINE Alu 283 298 -14 207 304 88 76 chr1 238305334 238305597 -43888067 - L2 LINE L2 -179 3093 2828 298 335 53 29 chr1 238305971 238306180 -43887484 - L2 LINE L2 -517 2797 2584 192 77 0 0 chr1 238306253 238306279 -43887385 + (TG)n Simple_repeat Simple_repeat 2 27 0 248 359 7 21 chr1 238306334 238306479 -43887185 - L2 LINE L2 -998 2316 2174 180 309 25 12 chr1 238306543 238306624 -43887040 - L2 LINE L2 -1251 2063 1982 977 168 6 6 chr1 238307147 238307314 -43886350 + Tigger1 DNA MER2_type 2252 2418 0 * 1470 205 61 79 chr1 238307314 238307757 -43885907 - MLT1C LTR MaLR -32 435 1 1629 197 3 3 chr1 238308501 238308795 -43884869 + AluJb SINE Alu 7 300 -12 279 0 0 0 chr1 238309847 238309878 -43883786 + (CA)n Simple_repeat Simple_repeat 2 32 0 381 269 23 23 chr1 238310326 238310456 -43883208 - L3 LINE CR1 -212 1365 1236 395 100 0 0 chr1 238310993 238311043 -43882621 - 5S rRNA rRNA -70 51 2 1896 157 0 7 chr1 238311180 238311473 -43882191 + AluJb SINE Alu 1 291 -21 2189 124 7 0 chr1 238311613 238311920 -43881744 + AluSx SINE Alu 1 309 -3 1852 160 11 0 chr1 238312132 238312413 -43881251 + AluSx SINE Alu 1 284 -28 395 291 53 35 chr1 238313155 238313382 -43880282 - MIR SINE MIR -29 233 3 185 233 47 0 chr1 238313430 238313473 -43880191 - L3b LINE CR1 -4 1579 1535 575 186 0 78 chr1 238313492 238313621 -43880043 - FRAM SINE Alu -1 175 57 1109 186 119 51 chr1 238314137 238314528 -43879136 + MER66B LTR ERV1 108 481 -5 194 278 74 0 chr1 238314777 238314831 -43878833 + MIR SINE MIR 43 100 -108 180 111 0 0 chr1 238315124 238315151 -43878513 + (T)n Simple_repeat Simple_repeat 1 27 0 2026 93 0 4 chr1 238316240 238316499 -43877165 - AluSc SINE Alu -51 258 1 26 0 0 0 chr1 238316609 238316635 -43877029 + AT_rich Low_complexity Low_complexity 1 26 0 1481 219 95 33 chr1 238319203 238319623 -43874041 - MSTB2 LTR MaLR -11 446 1 593 298 126 0 chr1 238320051 238320266 -43873398 - MIR SINE MIR 0 262 21 1405 194 71 57 chr1 238320726 238320884 -43872780 - Charlie1b DNA MER1_type -2238 523 369 1404 191 131 0 chr1 238320884 238321151 -43872513 - AluJo SINE Alu 0 302 1 1405 194 71 57 chr1 238321151 238321371 -43872293 - Charlie1b DNA MER1_type -2392 369 154 2239 71 0 0 chr1 238321371 238321653 -43872011 + AluY SINE Alu 2 283 -28 221 0 0 33 chr1 238321653 238321683 -43871981 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 1405 194 71 57 chr1 238321683 238321739 -43871925 - Charlie1b DNA MER1_type -2606 155 81 2949 114 19 5 chr1 238321885 238322306 -43871358 - MSTA LTR MaLR -1 427 1 331 294 129 18 chr1 238323073 238323236 -43870428 + L1ME LINE L1 2 182 -5888 2140 214 44 8 chr1 238323251 238323848 -43869816 + L1M4 LINE L1 2683 3300 -2846 4744 171 40 25 chr1 238324952 238325889 -43867775 + L1P LINE L1 12 962 -5184 8514 30 8 0 chr1 238325895 238326944 -43866720 - L1P LINE L1 -2831 3315 2259 23 54 0 0 chr1 238327539 238327576 -43866088 + AT_rich Low_complexity Low_complexity 1 37 0 269 280 0 43 chr1 238327777 238327870 -43865794 + L1MC4 LINE L1 6615 6703 -1339 277 216 54 0 chr1 238327870 238327944 -43865720 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 303 262 71 0 chr1 238327952 238328036 -43865628 + L1MC4 LINE L1 6614 6703 -1339 234 245 0 53 chr1 238328030 238328124 -43865540 - L1MC4 LINE L1 -1339 6703 6615 * 539 224 87 16 chr1 238329032 238329215 -43864449 - L2 LINE L2 0 3313 3118 2574 247 109 21 chr1 238329315 238330197 -43863467 - L2 LINE L2 -684 2630 1672 249 290 29 14 chr1 238330931 238331000 -43862664 + L2 LINE L2 3203 3272 0 209 260 0 0 chr1 238331756 238331806 -43861858 + GA-rich Low_complexity Low_complexity 2 51 0 218 307 13 13 chr1 238532640 238532715 -43660949 + L2 LINE L2 3186 3260 -12 322 279 20 41 chr1 238532735 238532882 -43660782 - MIR SINE MIR -58 204 61 1649 206 131 94 chr1 238534550 238535053 -43658611 + MLT1E2 LTR MaLR 18 548 -78 1551 207 3 3 chr1 238535053 238535343 -43658321 + AluJo SINE Alu 12 301 -11 1649 206 131 94 chr1 238535343 238535426 -43658238 + MLT1E2 LTR MaLR 548 626 0 2017 252 46 7 chr1 238536284 238536824 -43656840 + L1MD3 LINE L1 7404 7964 -31 280 345 0 18 chr1 238536826 238536939 -43656725 + MIR3 SINE MIR 64 174 -34 1596 181 12 98 chr1 238537037 238537231 -43656433 + MLT1A2 LTR MaLR 1 143 -231 456 35 0 0 chr1 238537231 238537289 -43656375 + (TC)n Simple_repeat Simple_repeat 2 59 0 1596 181 12 98 chr1 238537289 238537503 -43656161 + MLT1A2 LTR MaLR 143 374 0 1706 185 0 47 chr1 238538232 238538551 -43655113 + AluSx SINE Alu 1 304 -8 1634 140 47 84 chr1 238538713 238538835 -43654829 + AluSx SINE Alu 1 126 -186 9666 22 2 224 chr1 238538835 238540608 -43653056 + SVA Other Other 1 1378 -8 260 27 27 0 chr1 238540612 238540649 -43653015 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1634 140 47 84 chr1 238540649 238540842 -43652822 + AluSx SINE Alu 129 309 -3 492 18 0 0 chr1 238541000 238541057 -43652607 + (CA)n Simple_repeat Simple_repeat 1 57 0 249 239 7 138 chr1 238541291 238541401 -43652263 + L1MCa LINE L1 638 728 -5477 4754 142 52 65 chr1 238541401 238542315 -43651349 + MER4D LTR ERV1 1 903 0 249 239 7 138 chr1 238542315 238542342 -43651322 + L1MCa LINE L1 728 757 -5448 1694 168 33 23 chr1 238542416 238542719 -43650945 + AluJb SINE Alu 1 306 -6 1642 156 30 17 chr1 238543045 238543340 -43650324 + LTR2B LTR ERV1 192 490 0 574 242 33 38 chr1 238543441 238543619 -43650045 - LTR1B LTR ERV1 -328 498 341 542 245 120 11 chr1 238543680 238543871 -43649793 - LTR1 LTR ERV1 -564 221 42 3388 207 18 51 chr1 238544022 238545010 -43648654 + L1MCa LINE L1 -348 570 -5126 3360 148 12 4 chr1 238545013 238545521 -43648143 - MER41E LTR ERV1 0 512 1 4111 213 78 93 chr1 238545602 238546626 -43647038 + L1MCa LINE L1 577 1572 -4643 2090 125 3 0 chr1 238546626 238546913 -43646751 - AluSx SINE Alu -24 288 1 4111 213 78 93 chr1 238546913 238547369 -43646295 + L1MCa LINE L1 1572 2034 -4181 305 317 22 6 chr1 238547345 238547528 -43646136 + L1MCa LINE L1 1282 1467 -4929 * 408 213 55 79 chr1 238547527 238547691 -43645973 + L1MC5 LINE L1 7344 7503 -458 309 314 34 14 chr1 238547917 238548076 -43645588 + L1MCa LINE L1 1469 1671 -4605 2289 106 0 13 chr1 238548156 238548468 -43645196 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr1 238548600 238548623 -43645041 + AT_rich Low_complexity Low_complexity 1 23 0 730 222 16 27 chr1 238548812 238548997 -43644667 - L1MCa LINE L1 -4181 2245 2063 977 187 11 16 chr1 238548997 238549179 -43644485 - AluSx SINE Alu -127 185 5 467 294 145 12 chr1 238549385 238549729 -43643935 + L1MCa LINE L1 2179 2568 -3647 348 288 121 0 chr1 238549738 238549978 -43643686 + L1MCa LINE L1 2634 2902 -3313 2177 108 0 3 chr1 238549984 238550280 -43643384 + AluSc SINE Alu 2 296 -13 24 0 0 0 chr1 238550336 238550360 -43643304 + AT_rich Low_complexity Low_complexity 1 24 0 344 244 0 6 chr1 238550769 238550945 -43642719 + (TGG)n Simple_repeat Simple_repeat 3 177 0 821 234 75 81 chr1 238551169 238551515 -43642149 - L1MB1 LINE L1 0 6168 5825 637 261 58 79 chr1 238552965 238553382 -43640282 + L1MCc LINE L1 60 467 -5956 2302 107 0 0 chr1 238553458 238553757 -43639907 + AluSx SINE Alu 1 299 -13 265 204 0 0 chr1 238553962 238554016 -43639648 + L1MCc LINE L1 1579 1632 -5299 990 286 172 23 chr1 238554030 238554809 -43638855 + L1MCc LINE L1 1730 2624 -4498 1049 229 47 83 chr1 238554973 238555049 -43638615 + L1MC4 LINE L1 6460 6537 -1505 1636 196 3 3 chr1 238555049 238555345 -43638319 + AluJb SINE Alu 1 296 -16 1049 229 47 83 chr1 238555345 238555653 -43638011 + L1MC4 LINE L1 6537 6830 -1212 1193 183 52 8 chr1 238555679 238555931 -43637733 - AluJo SINE Alu -6 306 44 2069 309 35 50 chr1 238555931 238556670 -43636994 + L1MC4 LINE L1 6826 7553 -489 26 30 0 0 chr1 238556993 238557026 -43636638 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr1 238557212 238557236 -43636428 + (TG)n Simple_repeat Simple_repeat 1 24 0 339 253 198 0 chr1 238558019 238558110 -43635554 - MER81 DNA DNA -3 111 3 280 316 77 48 chr1 238558246 238558414 -43635250 + MIR3 SINE MIR 29 201 -7 246 62 0 0 chr1 238558570 238558602 -43635062 + (A)n Simple_repeat Simple_repeat 1 32 0 238 364 24 15 chr1 238558715 238558828 -43634836 - MIR SINE MIR -92 116 2 281 304 4 0 chr1 238560517 238560606 -43633058 - MIR SINE MIR -69 139 49 215 333 32 0 chr1 238561276 238561339 -43632325 + L2 LINE L2 3144 3208 -64 921 172 9 15 chr1 238561483 238561789 -43631875 - MSTD LTR MaLR 0 396 1 4507 193 36 22 chr1 238561967 238562817 -43630847 - MER21B LTR ERV1 -1 862 1 496 160 66 0 chr1 238563560 238563666 -43629998 - L1MA8 LINE L1 0 6291 6179 248 134 0 158 chr1 238563825 238563905 -43629759 - LTR48 LTR ERV1 -25 762 696 1193 200 64 0 chr1 238563905 238564125 -43629539 + Tigger7 DNA MER2_type 1 234 -471 643 175 0 0 chr1 238564126 238564229 -43629435 + Tigger7 DNA MER2_type 2386 2488 -3 229 267 78 22 chr1 238564303 238564393 -43629271 - LTR48 LTR ERV1 -167 620 526 1676 200 10 3 chr1 238564393 238564698 -43628966 + AluJo SINE Alu 1 307 -5 540 281 60 10 chr1 238564719 238564918 -43628746 - LTR48B LTR ERV1 -313 331 123 321 279 106 29 chr1 238564886 238564990 -43628674 - MER34 LTR ERV1 -430 112 1 * 589 120 22 0 chr1 238564990 238565061 -43628603 - L1MA6 LINE L1 -228 5943 5864 2303 168 66 52 chr1 238565061 238565544 -43628120 + LTR2B LTR ERV1 1 490 0 589 120 22 0 chr1 238565544 238565572 -43628092 - L1MA6 LINE L1 -307 5864 5838 277 261 0 15 chr1 238566764 238566829 -43626835 + GA-rich Low_complexity Low_complexity 3 66 0 225 167 0 42 chr1 238567405 238567453 -43626211 - L1MC4 LINE L1 -1349 6693 6648 215 325 38 25 chr1 238567545 238567625 -43626039 - MIR SINE MIR -76 186 106 213 119 0 0 chr1 238567630 238567672 -43625992 + (T)n Simple_repeat Simple_repeat 1 42 0 319 209 21 90 chr1 238568163 238568308 -43625356 + MIR SINE MIR 90 216 -46 203 267 0 0 chr1 238570322 238570367 -43623297 + T-rich Low_complexity Low_complexity 2 46 0 185 111 37 93 chr1 238570910 238570964 -43622700 - L2 LINE L2 -14 3299 3249 2108 111 0 56 chr1 238570985 238571309 -43622355 + AluSx SINE Alu 1 306 -6 242 356 107 34 chr1 238571480 238571713 -43621951 - L2 LINE L2 -214 3058 2809 415 219 47 27 chr1 238572036 238572168 -43621496 - MIR SINE MIR -67 141 2 231 222 0 0 chr1 238572332 238572377 -43621287 - MER117 DNA MER1_type -113 84 40 263 203 16 16 chr1 238572703 238572767 -43620897 - L3b LINE CR1 -197 1386 1323 182 317 0 0 chr1 238572904 238572945 -43620719 + MIR SINE MIR 36 76 -186 186 103 0 0 chr1 238572970 238572999 -43620665 + (ATG)n Simple_repeat Simple_repeat 2 30 0 648 280 57 0 chr1 238575341 238575534 -43618130 - MIR SINE MIR 0 262 59 2125 133 0 7 chr1 238575572 238575880 -43617784 - AluSx SINE Alu -6 306 1 1556 280 83 50 chr1 238577745 238578392 -43615272 - MER115 DNA AcHobo 0 693 25 207 281 52 62 chr1 238578747 238578843 -43614821 - MIR3 SINE MIR -21 187 93 540 228 22 0 chr1 238579191 238579327 -43614337 - L1ME1 LINE L1 -6 6229 6091 458 123 0 0 chr1 238579330 238579395 -43614269 - L1ME LINE L1 -384 5851 5787 2014 213 52 39 chr1 238579402 238579958 -43613706 + MER90 LTR ERV1 3 607 -7 1537 223 53 65 chr1 238579968 238580612 -43613052 - L1ME1 LINE L1 -470 5765 5135 350 206 103 66 chr1 238580613 238580749 -43612915 - MER33 DNA MER1_type -178 146 6 3342 271 63 22 chr1 238580759 238582584 -43611080 - L1ME1 LINE L1 -2908 3307 1410 2461 84 0 7 chr1 238582584 238582893 -43610771 - AluY SINE Alu -4 307 1 3342 271 63 22 chr1 238582893 238583288 -43610376 - L1ME1 LINE L1 -4805 1410 1033 1200 255 36 9 chr1 238583281 238583614 -43610050 + L1ME1 LINE L1 5780 6121 -45 * 210 118 0 0 chr1 238583686 238583720 -43609944 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1867 304 46 39 chr1 238583774 238583796 -43609868 - L1ME1 LINE L1 -5356 1040 1020 378 61 0 0 chr1 238583796 238583845 -43609819 + (CA)n Simple_repeat Simple_repeat 2 50 0 1867 304 46 39 chr1 238583845 238584718 -43608946 - L1ME1 LINE L1 -5376 1020 155 2403 96 3 0 chr1 238584718 238585030 -43608634 - AluSp SINE Alu 0 313 1 504 48 0 0 chr1 238585038 238585101 -43608563 + (TG)n Simple_repeat Simple_repeat 2 64 0 1867 304 46 39 chr1 238585101 238585195 -43608469 - L1ME1 LINE L1 -6247 149 34 1454 163 7 66 chr1 238586776 238587077 -43606587 + AluJo SINE Alu 11 293 -19 270 0 0 0 chr1 238587455 238587485 -43606179 + (TA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr1 238587544 238587574 -43606090 + AT_rich Low_complexity Low_complexity 1 30 0 2061 130 0 7 chr1 238587615 238587907 -43605757 - AluSg SINE Alu -20 290 1 358 282 82 7 chr1 238588240 238588378 -43605286 - MIR SINE MIR -66 142 36 2590 145 13 63 chr1 238588449 238588525 -43605139 + MSTC LTR MaLR 4 82 -346 324 0 0 0 chr1 238588525 238588561 -43605103 + (TG)n Simple_repeat Simple_repeat 2 37 0 2090 112 3 17 chr1 238588561 238588855 -43604809 - AluSq SINE Alu -18 295 6 2590 145 13 63 chr1 238588855 238589224 -43604440 + MSTC LTR MaLR 80 428 0 647 306 155 61 chr1 238590365 238590717 -43602947 - L2 LINE L2 -13 3259 2942 780 245 153 34 chr1 238590717 238591097 -43602567 + MSTC LTR MaLR 3 427 -1 647 306 155 61 chr1 238591097 238592469 -43601195 - L2 LINE L2 -330 2942 1368 341 251 62 24 chr1 238592705 238592861 -43600803 + MIR SINE MIR 16 176 -56 225 0 0 0 chr1 238593457 238593482 -43600182 + (TG)n Simple_repeat Simple_repeat 1 25 0 477 209 46 85 chr1 238593721 238593874 -43599790 - MIR3 SINE MIR -15 193 47 191 240 13 53 chr1 238593951 238594026 -43599638 - L2 LINE L2 -3 3269 3198 2433 97 0 0 chr1 238594026 238594336 -43599328 - AluSx SINE Alu -2 310 1 260 221 0 125 chr1 238594420 238594524 -43599140 + LTR67 LTR ERVL 16 106 -451 886 240 61 18 chr1 238594555 238594784 -43598880 + MIR SINE MIR 24 262 0 270 266 16 0 chr1 238594787 238594851 -43598813 + LTR67 LTR ERVL 108 172 -385 248 202 32 106 chr1 238594991 238595085 -43598579 + LTR67 LTR ERVL 463 549 -8 2335 68 0 0 chr1 238595105 238595427 -43598237 + AluY SINE Alu 1 322 0 293 336 9 9 chr1 238595454 238595561 -43598103 - MIR SINE MIR -155 107 1 321 236 66 28 chr1 238595590 238595696 -43597968 - L3 LINE CR1 -30 1547 1438 1843 191 85 38 chr1 238595944 238596390 -43597274 - MLT1C LTR MaLR 0 467 1 21 71 0 0 chr1 238596641 238596683 -43596981 + AT_rich Low_complexity Low_complexity 1 42 0 279 327 87 28 chr1 238596811 238597065 -43596599 - L1ME LINE L1 -374 5747 5479 294 29 0 0 chr1 238597080 238597115 -43596549 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 387 0 0 0 chr1 238597114 238597157 -43596507 + (GA)n Simple_repeat Simple_repeat 2 44 0 2110 116 3 0 chr1 238597184 238597493 -43596171 - AluSx SINE Alu 0 310 1 605 262 172 50 chr1 238597513 238597930 -43595734 - L1ME LINE L1 -743 5403 5038 1121 215 42 0 chr1 238597930 238598144 -43595520 + MER58A DNA MER1_type 2 224 0 605 262 172 50 chr1 238598144 238598633 -43595031 - L1ME LINE L1 -1108 5038 4386 431 269 71 56 chr1 238598983 238599180 -43594484 + LTR67 LTR ERVL 351 550 -7 334 300 122 39 chr1 238599347 238599527 -43594137 - MIR SINE MIR -16 246 52 2482 65 0 0 chr1 238599619 238599911 -43593753 + AluY SINE Alu 1 292 -19 375 316 45 19 chr1 238600607 238600762 -43592902 + MER91A DNA MER1_type 38 196 0 1588 207 49 30 chr1 238602419 238602786 -43590878 + MLT1A2 LTR MaLR 1 374 0 494 242 11 42 chr1 238602840 238602987 -43590677 + MIR SINE MIR 9 141 -67 298 239 221 0 chr1 238603089 238603202 -43590462 + MIR SINE MIR 125 262 0 706 285 159 28 chr1 238603470 238603860 -43589804 + MLT1J1 LTR MaLR 1 441 -5 2416 140 41 61 chr1 238605387 238605642 -43588022 + Tigger2a DNA MER2_type 1 245 -2463 2056 148 0 3 chr1 238605642 238605940 -43587724 + AluSx SINE Alu 1 297 -15 2416 140 41 61 chr1 238605940 238606127 -43587537 + Tigger2a DNA MER2_type 245 434 0 844 318 113 34 chr1 238606335 238606987 -43586677 - L2 LINE L2 -463 2851 2148 448 260 24 24 chr1 238607004 238607131 -43586533 - L2 LINE L2 -1304 2010 1884 272 348 72 17 chr1 238607353 238607534 -43586130 - MIR3 SINE MIR -2 206 16 375 323 95 0 chr1 238608318 238608476 -43585188 - MIR3 SINE MIR -14 194 22 216 0 0 0 chr1 238609812 238609836 -43583828 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 286 225 117 96 chr1 238610377 238610617 -43583047 + MLT1J LTR MaLR 1 245 -266 203 175 18 35 chr1 238611399 238611456 -43582208 + (TA)n Simple_repeat Simple_repeat 2 57 0 202 162 27 0 chr1 238611643 238611680 -43581984 + (TA)n Simple_repeat Simple_repeat 2 39 0 1465 181 100 4 chr1 238614530 238614813 -43578851 - AluJo SINE Alu 0 308 1 20979 185 46 30 chr1 238615058 238617984 -43575680 - L1PA13 LINE L1 -5 7596 4717 2095 126 7 0 chr1 238617984 238618270 -43575394 - AluSg SINE Alu -22 288 1 20979 185 46 30 chr1 238618270 238619568 -43574096 - L1PA13 LINE L1 -2884 4717 3441 2275 125 0 0 chr1 238619568 238619873 -43573791 + AluSx SINE Alu 1 305 -7 20979 185 46 30 chr1 238619873 238623286 -43570378 - L1PA13 LINE L1 -4160 3441 12 500 326 61 58 chr1 238623287 238623581 -43570083 - L2 LINE L2 -8 3305 3011 630 279 143 14 chr1 238624047 238624327 -43569337 - MER102b DNA MER1_type -9 332 17 392 245 59 45 chr1 238626196 238626339 -43567325 + MIR SINE MIR 8 141 -67 1802 154 50 17 chr1 238626682 238626980 -43566684 + AluJo SINE Alu 1 308 -4 250 254 0 15 chr1 238628004 238628071 -43565593 + L2 LINE L2 3243 3308 -5 194 331 24 57 chr1 238629690 238629814 -43563850 + L2 LINE L2 2939 3058 -214 32 67 0 0 chr1 238629935 238629995 -43563669 + AT_rich Low_complexity Low_complexity 1 60 0 365 235 133 0 chr1 238630440 238630538 -43563126 + MLT1J2 LTR MaLR 1 111 -339 413 258 93 57 chr1 238630562 238630756 -43562908 + MLT1J1 LTR MaLR 228 428 -18 956 267 72 49 chr1 238630756 238631104 -43562560 - MLT1I LTR MaLR 0 409 54 197 257 0 0 chr1 238631154 238631189 -43562475 - L2 LINE L2 -30 3242 3208 207 94 0 0 chr1 238631242 238631261 -43562403 + (T)n Simple_repeat Simple_repeat 1 22 -10 2458 42 0 7 chr1 238631261 238631550 -43562114 - L1PA5 LINE L1 0 6154 5868 207 94 0 0 chr1 238631550 238631562 -43562102 + (T)n Simple_repeat Simple_repeat 21 32 0 233 275 25 25 chr1 238632656 238632736 -43560928 - MIR SINE MIR -81 127 48 2403 69 0 50 chr1 238632797 238633116 -43560548 + AluY SINE Alu 1 303 -8 24 0 0 0 chr1 238633851 238633875 -43559789 + AT_rich Low_complexity Low_complexity 1 24 0 252 100 0 0 chr1 238634161 238634201 -43559463 + (TG)n Simple_repeat Simple_repeat 2 41 0 1865 188 30 45 chr1 238634448 238634940 -43558724 + MER74A LTR ERVL 56 557 -1 868 264 55 5 chr1 238637388 238637608 -43556056 + MIR SINE MIR 5 235 -27 348 344 53 0 chr1 238637632 238637763 -43555901 - MIR SINE MIR -64 198 61 5059 159 29 38 chr1 238637763 238638697 -43554967 + MSTA-int LTR MaLR 718 1643 -8 2668 122 16 64 chr1 238638704 238638882 -43554782 + MSTA LTR MaLR 1 186 -242 2262 68 10 17 chr1 238638882 238639176 -43554488 + AluY SINE Alu 1 292 -19 2668 122 16 64 chr1 238639176 238639447 -43554217 + MSTA LTR MaLR 186 428 0 492 341 150 16 chr1 238639923 238640310 -43553354 + L2 LINE L2 2827 3265 -7 182 286 0 14 chr1 238640713 238640783 -43552881 - MIR SINE MIR -50 212 144 339 295 0 1 chr1 238640839 238640935 -43552729 + MIR SINE MIR 38 132 -76 304 234 47 37 chr1 238641297 238641404 -43552260 - MIR SINE MIR -41 221 114 773 310 111 13 chr1 238641475 238641985 -43551679 + L2 LINE L2 2748 3312 -1 1855 184 0 3 chr1 238643749 238644059 -43549605 - AluJo SINE Alu 0 312 4 39 38 0 0 chr1 238644061 238644114 -43549550 + AT_rich Low_complexity Low_complexity 1 53 0 2285 133 39 30 chr1 238644345 238644706 -43548958 - THE1B LTR MaLR 0 364 1 2097 118 3 3 chr1 238645150 238645447 -43548217 + AluSx SINE Alu 1 297 -15 384 313 87 10 chr1 238645889 238646097 -43547567 - LTR33A LTR ERVL 0 523 300 2117 127 3 7 chr1 238646406 238646706 -43546958 + AluSx SINE Alu 1 299 -13 1439 195 2 146 chr1 238646817 238647243 -43546421 + MLT1A1 LTR MaLR 1 365 0 679 275 122 37 chr1 238647343 238647721 -43545943 + MLT1L LTR MaLR 186 595 -20 610 302 126 18 chr1 238647944 238648285 -43545379 + L3 LINE CR1 1199 1576 -1 2820 111 14 3 chr1 238648433 238648804 -43544860 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 238649359 238649384 -43544280 + AT_rich Low_complexity Low_complexity 1 25 0 365 289 39 0 chr1 238650256 238650360 -43543304 - MIR3 SINE MIR -31 177 70 283 276 13 13 chr1 238651199 238651275 -43542389 + L2 LINE L2 3153 3228 -44 2521 129 8 27 chr1 238651797 238652168 -43541496 - THE1B LTR MaLR 0 364 1 12101 104 19 0 chr1 238652168 238653716 -43539948 - THE1B-int LTR MaLR 0 1580 4 2493 132 5 27 chr1 238653719 238654091 -43539573 - THE1B LTR MaLR 0 364 1 990 268 126 37 chr1 238654209 238654668 -43538996 + L1MC/D LINE L1 5255 5754 -2054 204 255 21 0 chr1 238656570 238656617 -43537047 + MER5B DNA MER1_type 2 49 -129 210 105 0 0 chr1 238656617 238656655 -43537009 + (T)n Simple_repeat Simple_repeat 1 38 0 443 288 72 9 chr1 238656656 238656767 -43536897 + MER5B DNA MER1_type 55 172 -6 969 259 110 46 chr1 238656769 238657179 -43536485 - L2 LINE L2 0 3313 2878 22831 86 8 3 chr1 238657769 238660827 -43532837 - L1P LINE L1 -3073 3073 1 557 171 11 0 chr1 238660833 238660921 -43532743 - FLAM_A SINE Alu -18 124 36 192 313 12 48 chr1 238660952 238661035 -43532629 + L2 LINE L2 3188 3267 -5 578 284 129 9 chr1 238661640 238661872 -43531792 + MIR SINE MIR 3 262 0 2710 128 2 33 chr1 238661923 238662230 -43531434 - L1PA16 LINE L1 0 6166 5874 2256 117 0 0 chr1 238662230 238662530 -43531134 + AluSc SINE Alu 1 300 -9 2710 128 2 33 chr1 238662530 238662650 -43531014 - L1PA16 LINE L1 -292 5874 5752 239 203 109 16 chr1 238663772 238663836 -43529828 + L2 LINE L2 3203 3272 0 2559 65 0 3 chr1 238663985 238664292 -43529372 + AluY SINE Alu 1 306 -5 242 263 8 59 chr1 238664292 238664410 -43529254 + L1MC4a LINE L1 72 183 -5936 2358 100 3 0 chr1 238664708 238665009 -43528655 + AluSx SINE Alu 1 302 -10 1001 185 20 10 chr1 238665049 238665244 -43528420 - MSTD LTR MaLR -199 197 1 498 61 30 0 chr1 238665322 238665388 -43528276 - MSTD LTR MaLR -328 68 1 1771 292 71 45 chr1 238665501 238666757 -43526907 + HERV16 LTR ERVL 1752 3074 -1922 255 280 17 42 chr1 238666755 238666873 -43526791 + HERV16 LTR ERVL 4960 5074 -690 * 377 286 23 36 chr1 238667013 238667186 -43526478 + HERV16 LTR ERVL 4729 4881 -115 1592 291 9 12 chr1 238667294 238667720 -43525944 + LTR16A LTR ERVL 26 450 0 180 0 0 0 chr1 238667767 238667787 -43525877 + (TA)n Simple_repeat Simple_repeat 1 20 0 2344 121 26 6 chr1 238667793 238668141 -43525523 - THE1B LTR MaLR -9 355 1 377 334 23 69 chr1 238668150 238668497 -43525167 + L1MC4a LINE L1 2459 2789 -3340 1337 260 90 56 chr1 238668720 238669661 -43524003 + L1MC4a LINE L1 3639 4623 -1506 1896 144 0 11 chr1 238669661 238669972 -43523692 - AluSx SINE Alu 0 308 1 1337 260 90 56 chr1 238669972 238670110 -43523554 + L1MC4a LINE L1 4623 4755 -1374 359 209 132 0 chr1 238670235 238670326 -43523338 + L1MC4a LINE L1 5748 5850 -1941 3880 220 94 43 chr1 238670387 238671692 -43521972 + L1MC4a LINE L1 5806 7090 -701 2059 98 4 0 chr1 238671692 238671957 -43521707 - AluY SINE Alu -6 305 40 3880 220 94 43 chr1 238671957 238672698 -43520966 + L1MC4a LINE L1 7090 7791 0 416 287 146 27 chr1 238672812 238673140 -43520524 + L2 LINE L2 2009 2375 -939 1138 194 135 11 chr1 238673143 238673530 -43520134 + MLT1F1 LTR MaLR 3 430 -112 1658 144 0 30 chr1 238673725 238673988 -43519676 - L1PA16 LINE L1 0 6166 5912 297 374 76 17 chr1 238673990 238674228 -43519436 + L2 LINE L2 2454 2705 -609 2497 58 10 7 chr1 238674339 238674649 -43519015 + AluY SINE Alu 1 311 0 383 252 42 28 chr1 238674921 238675064 -43518600 - L1ME4a LINE L1 -188 5933 5789 280 260 198 0 chr1 238676138 238676234 -43517430 - MIR SINE MIR -1 261 147 * 440 250 58 0 chr1 238676231 238676351 -43517313 + L2 LINE L2 3187 3313 0 215 217 0 0 chr1 238676349 238676395 -43517269 - MIR SINE MIR -115 147 102 * 2517 65 3 7 chr1 238676426 238676736 -43516928 - AluY SINE Alu -2 309 1 2345 94 0 22 chr1 238676848 238677168 -43516496 - AluSq SINE Alu 0 313 1 425 281 186 0 chr1 238679047 238679214 -43514450 - MIR SINE MIR -17 245 48 315 261 37 4 chr1 238679517 238679655 -43514009 + MIR SINE MIR 37 235 -27 21 36 0 0 chr1 238679659 238679687 -43513977 + AT_rich Low_complexity Low_complexity 1 28 0 189 332 122 34 chr1 238679848 238680086 -43513578 - L2 LINE L2 -347 2967 2709 2119 115 7 7 chr1 238680478 238680774 -43512890 - AluSq SINE Alu -17 296 1 517 193 28 9 chr1 238681174 238681283 -43512381 - MLT1F1 LTR MaLR -4 563 453 747 290 9 0 chr1 238682353 238682584 -43511080 - MIR SINE MIR 0 262 30 873 307 91 14 chr1 238682611 238683162 -43510502 + L1ME2 LINE L1 5293 5885 -279 23 0 0 0 chr1 238683359 238683382 -43510282 + AT_rich Low_complexity Low_complexity 1 23 0 293 242 74 67 chr1 238683671 238683820 -43509844 - MIR3 SINE MIR -21 187 38 1106 253 93 40 chr1 238684050 238684446 -43509218 - L3 LINE CR1 -6 1571 1155 1403 165 73 76 chr1 238684503 238684872 -43508792 - THE1C LTR MaLR 0 375 8 1404 250 101 82 chr1 238686103 238686687 -43506977 - MLT1G LTR MaLR 0 590 1 284 278 39 153 chr1 238688180 238688328 -43505336 + L2 LINE L2 2866 3029 -243 1637 184 24 3 chr1 238688328 238688500 -43505164 - AluJo SINE Alu -12 300 118 191 36 36 0 chr1 238688500 238688528 -43505136 + (TATG)n Simple_repeat Simple_repeat 4 32 0 1637 184 24 3 chr1 238688528 238688649 -43505015 - AluJo SINE Alu -194 118 1 284 278 39 153 chr1 238688649 238688957 -43504707 + L2 LINE L2 3029 3270 -2 1522 183 3 71 chr1 238689238 238689605 -43504059 - MLT1A2 LTR MaLR -4 370 29 460 304 67 9 chr1 238689735 238690077 -43503587 + L1ME4a LINE L1 5618 5979 -142 256 357 105 14 chr1 238690716 238690859 -43502805 + MIR SINE MIR 78 233 -29 2196 103 0 0 chr1 238692140 238692421 -43501243 - AluSq SINE Alu -32 281 1 243 266 80 80 chr1 238693304 238693503 -43500161 + LTR67 LTR ERVL 3 201 -356 296 306 65 16 chr1 238693645 238693769 -43499895 + LTR67 LTR ERVL 387 516 -41 567 238 48 7 chr1 238694677 238694824 -43498840 + L2 LINE L2 2304 2456 -858 972 211 0 0 chr1 238694825 238694991 -43498673 + FRAM SINE Alu 1 163 -13 1213 308 79 42 chr1 238694992 238695816 -43497848 + L2 LINE L2 2450 3313 0 2360 108 13 0 chr1 238696017 238696324 -43497340 - AluSx SINE Alu -1 311 1 668 288 31 18 chr1 238697112 238697341 -43496323 - L2 LINE L2 -5 3308 3077 1409 154 0 0 chr1 238697346 238697593 -43496071 + L1MA4 LINE L1 3999 4245 -1901 1155 101 85 58 chr1 238697698 238697968 -43495696 + AluSg/x SINE Alu 88 362 0 5770 145 26 19 chr1 238697968 238698250 -43495414 + L1MA4 LINE L1 4484 4762 -1538 1561 186 62 3 chr1 238698250 238698540 -43495124 + AluJo SINE Alu 1 307 -5 5770 145 26 19 chr1 238698540 238700061 -43493603 + L1MA4 LINE L1 4762 6298 -2 2081 115 25 3 chr1 238700074 238700360 -43493304 + AluSg SINE Alu 1 292 -18 1423 317 93 5 chr1 238700514 238701059 -43492605 - L2 LINE L2 -286 3027 2436 895 287 208 12 chr1 238701073 238701505 -43492159 - L2 LINE L2 -1629 1685 1169 4112 209 23 67 chr1 238701512 238703245 -43490419 - L1PB4 LINE L1 -2 6154 4517 317 106 0 0 chr1 238703247 238703294 -43490370 - MSTA LTR MaLR -2 426 380 5089 173 33 1 chr1 238703294 238704241 -43489423 - MSTA-int LTR MaLR -674 977 1 2431 152 54 5 chr1 238704241 238704649 -43489015 - MSTA LTR MaLR 0 428 1 4957 178 32 12 chr1 238704650 238705771 -43487893 - L1PB4 LINE L1 -1626 4520 3378 673 292 75 42 chr1 238705790 238706122 -43487542 - L2 LINE L2 -2178 1136 794 1422 260 88 65 chr1 238706122 238706756 -43486908 - L2 LINE L2 -2377 937 289 875 253 36 106 chr1 238707967 238708344 -43485320 - MER66A LTR ERV1 -10 518 151 2807 7 0 0 chr1 238708344 238708649 -43485015 - AluYa5 SINE Alu -6 305 1 875 253 36 106 chr1 238708649 238708707 -43484957 - MER66A LTR ERV1 -377 151 90 366 310 61 1 chr1 238710532 238710665 -43482999 - MIR SINE MIR -61 147 36 195 100 0 0 chr1 238710785 238710815 -43482849 + (CA)n Simple_repeat Simple_repeat 2 31 0 200 289 0 0 chr1 238711163 238711208 -43482456 + L2 LINE L2 3213 3257 -15 38 22 0 0 chr1 238711675 238711720 -43481944 + AT_rich Low_complexity Low_complexity 1 45 0 655 266 26 26 chr1 238712707 238712899 -43480765 - MIR SINE MIR -26 236 45 341 311 68 28 chr1 238712942 238713193 -43480471 - L1ME4a LINE L1 -202 5919 5659 228 304 0 29 chr1 238713774 238713876 -43479788 + T-rich Low_complexity Low_complexity 4 102 0 * 238 219 31 16 chr1 238713813 238713877 -43479787 + CT-rich Low_complexity Low_complexity 1 65 0 1326 283 86 38 chr1 238714105 238714819 -43478845 - HAL1 LINE L1 -593 1914 1153 2350 98 3 3 chr1 238714819 238715125 -43478539 - AluSc SINE Alu -3 306 1 1326 283 86 38 chr1 238715125 238715237 -43478427 - HAL1 LINE L1 -1354 1153 1048 190 300 0 0 chr1 238715241 238715321 -43478343 + CT-rich Low_complexity Low_complexity 2 81 0 244 170 0 19 chr1 238715993 238716046 -43477618 - MLT2F LTR ERVL 0 663 612 21 0 0 0 chr1 238716098 238716119 -43477545 + AT_rich Low_complexity Low_complexity 1 21 0 1388 222 14 31 chr1 238716196 238716383 -43477281 - L1MC4a LINE L1 -259 7549 7360 2393 89 0 0 chr1 238716383 238716687 -43476977 - AluY SINE Alu -7 304 1 1388 222 14 31 chr1 238716687 238716914 -43476750 - L1MC4a LINE L1 -448 7360 7142 2519 58 0 7 chr1 238716941 238717251 -43476413 - AluY SINE Alu -3 308 1 3717 247 62 40 chr1 238717285 238718319 -43475345 - L1MC4 LINE L1 -1123 6988 5907 2262 93 0 23 chr1 238718319 238718619 -43475045 + AluSx SINE Alu 14 306 -6 3717 247 62 40 chr1 238718619 238719142 -43474522 - L1MC4 LINE L1 -2204 5907 5397 1672 176 10 16 chr1 238719148 238719455 -43474209 - AluJb SINE Alu -7 305 1 243 205 77 13 chr1 238720478 238720556 -43473108 - L1MC4 LINE L1 -821 5394 5312 2748 227 123 17 chr1 238720659 238721720 -43471944 - L1MC4 LINE L1 -1098 5117 3945 * 3081 256 18 5 chr1 238721708 238722940 -43470724 - L1MC4 LINE L1 -2974 3241 2035 753 40 30 0 chr1 238723157 238723258 -43470406 - MER41A LTR ERV1 -88 466 363 18516 52 1 0 chr1 238723258 238726362 -43467302 - L1PA5 LINE L1 0 6154 3041 672 241 21 37 chr1 238776765 238776956 -43416708 + MIR3 SINE MIR 15 202 -6 524 292 60 28 chr1 238777474 238777690 -43415974 + MIR SINE MIR 9 231 -31 2135 120 0 17 chr1 238777780 238778081 -43415583 - AluSg SINE Alu -14 296 1 180 152 0 0 chr1 238780032 238780065 -43413599 + (TG)n Simple_repeat Simple_repeat 2 34 0 226 286 0 0 chr1 238780068 238780124 -43413540 + GA-rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr1 238780313 238780337 -43413327 + (A)n Simple_repeat Simple_repeat 1 24 0 446 283 167 0 chr1 238781436 238781574 -43412090 + MER5A DNA MER1_type 11 171 -18 229 341 37 0 chr1 238782566 238782648 -43411016 - L2 LINE L2 -4 3268 3184 201 333 15 68 chr1 238782667 238782799 -43410865 + MIR SINE MIR 2 126 -136 2226 106 3 7 chr1 238785307 238785610 -43408054 + AluSg1 SINE Alu 1 302 -7 325 237 35 53 chr1 238785658 238785772 -43407892 - MLT1F LTR MaLR -430 112 1 1548 258 9 97 chr1 238785958 238786287 -43407377 - AluY SINE Alu -11 300 1 254 148 19 0 chr1 238787132 238787186 -43406478 + (TG)n Simple_repeat Simple_repeat 1 55 0 2167 130 0 0 chr1 238787733 238788040 -43405624 + AluSq SINE Alu 1 307 -6 967 283 90 24 chr1 238790060 238790626 -43403038 - MLT2F LTR ERVL -2 661 1 185 219 0 0 chr1 238790847 238790888 -43402776 + L2 LINE L2 1264 1304 -2010 791 286 177 8 chr1 238790888 238791283 -43402381 + L2 LINE L2 1265 1726 -1588 634 236 67 47 chr1 238791307 238791561 -43402103 - L1MC5 LINE L1 -516 7445 7187 1298 117 19 51 chr1 238791615 238791829 -43401835 - AluSg/x SINE Alu -14 298 92 464 152 0 0 chr1 238791929 238791995 -43401669 - AluS SINE Alu -246 67 2 3025 290 66 42 chr1 238792251 238792922 -43400742 + L2 LINE L2 1749 2402 -911 2553 55 0 3 chr1 238792922 238793229 -43400435 + AluY SINE Alu 1 306 -5 3025 290 66 42 chr1 238793229 238794087 -43399577 + L2 LINE L2 2402 3311 -2 486 285 101 22 chr1 238796615 238796794 -43396870 + MIR SINE MIR 3 195 -67 1060 199 11 64 chr1 238797169 238797436 -43396228 - MIR SINE MIR -5 257 5 449 149 138 0 chr1 238797971 238798058 -43395606 - L1MB7 LINE L1 -7 6177 6079 452 225 38 2 chr1 238798058 238798165 -43395499 + MER39 LTR ERV1 4 114 -428 1351 234 66 53 chr1 238798165 238798479 -43395185 + MER39 LTR ERV1 216 422 -163 2240 102 7 7 chr1 238798479 238798774 -43394890 + AluSx SINE Alu 2 296 -16 1351 234 66 53 chr1 238798774 238798941 -43394723 + MER39 LTR ERV1 422 585 0 1305 199 35 0 chr1 238798942 238799198 -43394466 - L1MB7 LINE L1 -103 6081 5817 2037 153 0 13 chr1 238799212 238799526 -43394138 - AluSx SINE Alu -2 310 1 31 0 0 0 chr1 238799552 238799583 -43394081 + AT_rich Low_complexity Low_complexity 1 31 0 2595 53 0 3 chr1 238799592 238799895 -43393769 + AluY SINE Alu 1 302 -9 22 0 0 0 chr1 238800195 238800217 -43393447 + AT_rich Low_complexity Low_complexity 1 22 0 253 234 16 31 chr1 238800381 238800445 -43393219 + L2 LINE L2 3249 3311 -2 255 308 212 25 chr1 238800670 238800868 -43392796 - MIR SINE MIR -11 251 17 397 303 19 25 chr1 238800961 238801123 -43392541 + L2 LINE L2 2023 2183 -1131 496 123 0 0 chr1 238801231 238801296 -43392368 - AluS SINE Alu -247 66 2 365 277 32 0 chr1 238801391 238801485 -43392179 + MIR3 SINE MIR 71 167 -41 642 60 0 0 chr1 238801762 238801845 -43391819 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1211 149 0 0 chr1 238801845 238802020 -43391644 - L1PB3 LINE L1 -9 6145 5971 264 338 0 0 chr1 238802171 238802248 -43391416 + L2 LINE L2 3236 3312 -1 212 179 0 0 chr1 238802423 238802462 -43391202 + (TA)n Simple_repeat Simple_repeat 1 39 0 711 74 0 113 chr1 238802674 238802877 -43390787 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 539 134 24 0 chr1 238802892 238802974 -43390690 - AluS SINE Alu -9 303 220 843 127 14 21 chr1 238802975 238803117 -43390547 - AluSq/x SINE Alu -172 141 1 2146 120 0 17 chr1 238803903 238804204 -43389460 - AluSc SINE Alu -13 296 1 264 213 0 0 chr1 238806444 238806505 -43387159 + (CACCAT)n Simple_repeat Simple_repeat 5 65 0 806 265 40 32 chr1 238806515 238806764 -43386900 - MIR SINE MIR -4 258 8 382 303 53 13 chr1 238806894 238807046 -43386618 - MER96 DNA MER1_type? -16 159 2 349 315 0 18 chr1 238807551 238807662 -43386002 - MIR3 SINE MIR -6 202 94 333 131 0 0 chr1 238807982 238808043 -43385621 + (TG)n Simple_repeat Simple_repeat 2 62 0 315 306 111 21 chr1 238808870 238808940 -43384724 - MIR SINE MIR -74 188 126 1947 162 10 0 chr1 238808940 238809242 -43384422 + AluJb SINE Alu 1 305 -7 315 306 111 21 chr1 238809242 238809315 -43384349 - MIR SINE MIR -136 126 32 550 184 19 10 chr1 238809358 238809461 -43384203 + MER5A DNA MER1_type 9 112 -77 184 247 281 11 chr1 238809393 238809482 -43384182 - MER5A DNA MER1_type -31 158 46 * 1387 185 52 13 chr1 238809519 238809545 -43384119 - MER33 DNA MER1_type -2262 323 299 497 165 13 0 chr1 238809545 238809624 -43384040 - MADE1 DNA Mariner 0 80 1 1387 185 52 13 chr1 238809624 238809905 -43383759 - MER33 DNA MER1_type -2286 299 4 946 201 5 36 chr1 238809917 238810111 -43383553 - MER5A DNA MER1_type -1 188 1 497 301 71 37 chr1 238810508 238810804 -43382860 + L2 LINE L2 2593 2898 -416 2421 52 0 10 chr1 238810804 238811093 -43382571 - AluY SINE Alu -1 310 25 479 317 64 57 chr1 238811094 238811513 -43382151 + L2 LINE L2 2879 3300 -13 804 247 110 0 chr1 238813223 238813442 -43380222 + MIR SINE MIR 10 252 -10 246 186 51 0 chr1 238813442 238813501 -43380163 + CT-rich Low_complexity Low_complexity 2 63 0 1101 180 12 49 chr1 238813605 238813849 -43379815 - MER96B DNA MER1_type? -180 237 3 958 181 36 62 chr1 238814924 238815041 -43378623 - MER5A DNA MER1_type 0 189 77 2340 92 0 7 chr1 238815041 238815346 -43378318 - AluY SINE Alu -8 303 1 958 181 36 62 chr1 238815346 238815421 -43378243 - MER5A DNA MER1_type -112 77 2 296 267 40 20 chr1 238816793 238816894 -43376770 - MIR SINE MIR -75 187 85 360 335 46 26 chr1 238818555 238818707 -43374957 + L2 LINE L2 3117 3271 -1 1046 187 70 48 chr1 238818774 238819103 -43374561 - MSTD LTR MaLR 0 396 1 410 172 86 109 chr1 238819782 238820003 -43373661 - L1ME4a LINE L1 -32 6089 5874 646 274 55 39 chr1 238820239 238820494 -43373170 + MIR SINE MIR 3 261 -1 2284 99 3 3 chr1 238820612 238820916 -43372748 - AluSc SINE Alu -5 304 1 2359 88 3 0 chr1 238820953 238821247 -43372417 - AluSp SINE Alu -18 295 1 372 313 12 54 chr1 238821434 238821600 -43372064 - MIR3 SINE MIR -34 174 16 1809 168 0 3 chr1 238823318 238823603 -43370061 - AluJb SINE Alu -28 284 1 471 260 10 0 chr1 238823603 238823699 -43369965 - MER2 DNA MER2_type -247 98 2 840 257 168 28 chr1 238823961 238824354 -43369310 - MER77 LTR ERV1 -4 601 154 252 227 0 45 chr1 238824498 238824564 -43369100 - MER77 LTR ERV1 -490 115 53 24 53 0 0 chr1 238826238 238826276 -43367388 + AT_rich Low_complexity Low_complexity 1 38 0 562 306 44 29 chr1 238827121 238827327 -43366337 + MIR SINE MIR 2 210 -52 * 834 277 56 30 chr1 238827309 238827648 -43366016 - L2 LINE L2 -1 3312 2965 1623 220 46 39 chr1 238827651 238828110 -43365554 + MLT1C LTR MaLR 6 467 0 790 242 81 23 chr1 238828110 238828370 -43365294 - L2 LINE L2 -342 2972 2698 233 309 25 25 chr1 238828961 238829042 -43364622 - L2 LINE L2 -1 3312 3232 1396 89 6 0 chr1 238830383 238830563 -43363101 + AluY SINE Alu 121 301 -10 422 110 55 14 chr1 238830563 238830627 -43363037 - L1PA16 LINE L1 -42 6124 6055 2698 146 29 65 chr1 238830627 238831153 -43362511 - L1PA16 LINE L1 -2 6164 5658 318 68 0 0 chr1 238831165 238831209 -43362455 - L1PA16 LINE L1 -488 5678 5635 * 1639 110 59 4 chr1 238831207 238831462 -43362202 + L1PA16 LINE L1 5387 5655 -511 618 134 13 4 chr1 238831460 238831575 -43362089 - L1MB7 LINE L1 -353 5831 5717 * 291 253 58 0 chr1 238831551 238831638 -43362026 - L1M4 LINE L1 -2524 3622 3531 * 678 259 40 11 chr1 238831667 238831841 -43361823 + MER5A DNA MER1_type 9 187 -2 194 316 51 10 chr1 238831920 238832018 -43361646 - L3 LINE CR1 -285 1292 1191 406 284 10 0 chr1 238832054 238832156 -43361508 + L2 LINE L2 3210 3312 -1 269 183 113 0 chr1 238832190 238832261 -43361403 - MLT1K LTR MaLR 0 588 510 370 206 0 16 chr1 238833870 238833933 -43359731 + tRNA-Ile-ATT tRNA tRNA 3 64 -13 180 111 0 0 chr1 238834139 238834166 -43359498 + (TC)n Simple_repeat Simple_repeat 2 28 0 966 200 14 19 chr1 238836568 238836778 -43356886 - MER3 DNA MER1_type 0 209 1 3042 172 43 49 chr1 238837030 238837727 -43355937 + LTR8A LTR ERV1 34 726 -1 233 219 14 0 chr1 238837738 238837811 -43355853 + CT-rich Low_complexity Low_complexity 2 75 0 418 280 27 47 chr1 238838101 238838130 -43355534 - MIR SINE MIR -81 181 153 2052 141 3 0 chr1 238838130 238838442 -43355222 - AluSq SINE Alu 0 313 1 418 280 27 47 chr1 238838442 238838562 -43355102 - MIR SINE MIR -109 153 35 2209 90 33 0 chr1 238839233 238839534 -43354130 - AluSp SINE Alu -2 311 1 198 256 0 0 chr1 238840281 238840324 -43353340 - L2 LINE L2 0 3313 3271 582 276 78 51 chr1 238841336 238841553 -43352111 - MIR SINE MIR -8 254 32 2028 154 0 0 chr1 238841628 238841927 -43351737 + AluJb SINE Alu 1 299 -13 207 321 85 9 chr1 238842081 238842187 -43351477 + L2 LINE L2 1611 1724 -1590 500 82 0 14 chr1 238842291 238842364 -43351300 - Alu SINE Alu -238 72 1 526 301 84 30 chr1 238842367 238842714 -43350950 + L2 LINE L2 2324 2741 -573 4311 190 55 44 chr1 238842714 238845246 -43348418 + L1MD1 LINE L1 1324 6107 -529 2440 189 14 61 chr1 238845751 238846312 -43347352 + L1MD1 LINE L1 6089 6623 -13 905 193 47 0 chr1 238846327 238846539 -43347125 + L1MD3 LINE L1 7769 7990 -5 * 1109 234 71 60 chr1 238846536 238847086 -43346578 + L1MC4a LINE L1 1844 2399 -3997 308 297 40 29 chr1 238847155 238847330 -43346334 + L1MC4a LINE L1 5324 5500 -735 510 283 140 12 chr1 238847346 238847695 -43345969 + L1MC4a LINE L1 5571 5878 -361 2388 87 3 3 chr1 238848071 238848380 -43345284 - AluSc SINE Alu 0 309 1 392 286 78 12 chr1 238848517 238848694 -43344970 + LTR33 LTR ERVL 331 516 -5 494 259 99 33 chr1 238848870 238849082 -43344582 + MIR SINE MIR 2 227 -35 2070 113 7 7 chr1 238850911 238851212 -43342452 + AluSx SINE Alu 1 301 -11 315 228 12 20 chr1 238851454 238851539 -43342125 + MER5B DNA MER1_type 16 109 -80 285 51 0 0 chr1 238852262 238852301 -43341363 + (CA)n Simple_repeat Simple_repeat 2 40 0 2214 112 3 3 chr1 238852851 238853154 -43340510 - AluSg SINE Alu -7 303 1 993 267 82 50 chr1 238853264 238853735 -43339929 - MER34 LTR ERV1 0 542 51 2182 128 0 0 chr1 238853735 238854040 -43339624 + AluSx SINE Alu 1 305 -7 993 267 82 50 chr1 238854040 238854093 -43339571 - MER34 LTR ERV1 -491 51 1 359 244 250 6 chr1 238854355 238854519 -43339145 - MIR SINE MIR -11 251 48 398 360 29 0 chr1 238854715 238854851 -43338813 + L2 LINE L2 3132 3271 -1 257 244 116 23 chr1 238855230 238855316 -43338348 - MER5C DNA MER1_type 0 324 231 472 244 34 8 chr1 238855340 238855459 -43338205 - MER5C DNA MER1_type -200 124 3 1268 180 88 10 chr1 238855500 238855795 -43337869 - MER33 DNA MER1_type -6 318 1 194 208 38 38 chr1 238856044 238856097 -43337567 - L2 LINE L2 -8 3264 3212 2155 191 40 7 chr1 238858136 238858582 -43335082 + LOR1b LTR ERV1 1 461 0 276 304 0 0 chr1 238858662 238858731 -43334933 - MER96 DNA MER1_type? -106 69 1 799 193 39 0 chr1 238859174 238859355 -43334309 + MER53 DNA DNA 2 189 0 2346 101 0 0 chr1 238859406 238859713 -43333951 - AluSc SINE Alu -2 307 1 2303 63 27 13 chr1 238859944 238860244 -43333420 - AluY SINE Alu -7 304 1 298 326 30 30 chr1 238860251 238860386 -43333278 - MIR SINE MIR -52 210 76 * 369 323 144 13 chr1 238860382 238860611 -43333053 - MIR SINE MIR -2 260 2 533 42 14 0 chr1 238863368 238863440 -43330224 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 389 303 74 11 chr1 238864531 238864706 -43328958 + MIR SINE MIR 16 201 -61 1718 179 4 0 chr1 238865249 238865522 -43328142 - AluJb SINE Alu -32 280 7 637 311 49 21 chr1 238867562 238867619 -43326045 + L1MEc LINE L1 36 90 -6306 286 42 42 21 chr1 238867619 238867667 -43325997 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 637 311 49 21 chr1 238867667 238867895 -43325769 + L1MEc LINE L1 90 329 -6067 637 300 31 27 chr1 238868115 238868661 -43325003 + L1MEc LINE L1 588 1586 -4810 273 234 52 0 chr1 238868732 238868809 -43324855 + L1MEc LINE L1 1735 1815 -4581 225 273 0 0 chr1 238868815 238868870 -43324794 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 4373 296 97 39 chr1 238868874 238870217 -43323447 + L1MEc LINE L1 1833 3097 -3118 2382 83 0 3 chr1 238870217 238870518 -43323146 + AluY SINE Alu 12 311 0 4373 296 97 39 chr1 238870518 238872136 -43321528 + L1MEc LINE L1 3097 4921 -1294 2188 113 0 3 chr1 238872136 238872429 -43321235 - AluSc SINE Alu -13 296 5 1264 75 6 0 chr1 238872530 238872689 -43320975 + AluY SINE Alu 142 301 -10 461 232 67 18 chr1 238872690 238872854 -43320810 + L1MEc LINE L1 5055 5226 -989 293 153 0 17 chr1 238873280 238873339 -43320325 + CT-rich Low_complexity Low_complexity 1 58 0 187 366 40 20 chr1 238873928 238874029 -43319635 - MIR SINE MIR -68 140 38 249 398 8 8 chr1 238874139 238874257 -43319407 + L2 LINE L2 3136 3253 -19 222 37 0 0 chr1 238874262 238874289 -43319375 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 286 309 31 10 chr1 238874331 238874428 -43319236 - MER5B DNA MER1_type -19 159 61 342 214 12 60 chr1 238875348 238875432 -43318232 - MER81 DNA DNA -34 80 1 243 0 0 0 chr1 238875613 238875640 -43318024 + (GA)n Simple_repeat Simple_repeat 2 28 0 183 119 24 48 chr1 238875879 238875921 -43317743 + L2 LINE L2 675 715 -2599 2234 118 0 13 chr1 238875950 238876265 -43317399 + AluSq SINE Alu 1 311 -2 1975 113 0 21 chr1 238876267 238876582 -43317082 + AluSx SINE Alu 1 309 0 627 308 168 28 chr1 238876582 238877004 -43316660 - LTR16C LTR ERVL -10 481 1 3006 280 188 23 chr1 238877004 238878431 -43315233 + L2 LINE L2 720 2381 -933 1635 131 51 4 chr1 238878450 238878724 -43314940 - L1PB2 LINE L1 -1 6150 5864 11971 206 28 7 chr1 238878726 238879605 -43314059 - L1 LINE L1 -844 5302 4442 198 0 0 0 chr1 238879605 238879627 -43314037 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 11971 206 28 7 chr1 238879627 238881528 -43312136 - L1 LINE L1 -1704 4442 2465 822 298 105 13 chr1 238881531 238881846 -43311818 + L2 LINE L2 2357 2700 -614 2072 128 7 0 chr1 238881849 238882146 -43311518 + AluSx SINE Alu 1 299 -13 188 67 33 0 chr1 238882152 238882182 -43311482 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1194 306 93 14 chr1 238882211 238882587 -43311077 + L2 LINE L2 1801 2227 -1087 1201 246 141 51 chr1 238882587 238882854 -43310810 + HsTC2c DNA MER2_type 1 243 -1655 2031 123 4 0 chr1 238882854 238883130 -43310534 + AluSg SINE Alu 1 277 -33 1201 246 141 51 chr1 238883130 238883530 -43310134 + HsTC2c DNA MER2_type 243 728 -1 1194 306 93 14 chr1 238883530 238883646 -43310018 + L2 LINE L2 2227 2332 -982 1372 82 16 5 chr1 238883647 238883863 -43309801 - AluSg/x SINE Alu 0 314 97 1726 107 0 0 chr1 238883989 238884213 -43309451 - AluSq SINE Alu -89 224 1 971 279 114 60 chr1 238884296 238884777 -43308887 + L2 LINE L2 2807 3313 0 433 305 84 39 chr1 238884781 238884984 -43308680 + MIR SINE MIR 42 253 -9 2025 135 6 16 chr1 238885313 238885624 -43308040 + AluSq SINE Alu 1 308 -5 191 326 0 0 chr1 238885713 238885759 -43307905 - L2 LINE L2 -223 3049 3004 301 311 0 0 chr1 238885784 238885874 -43307790 - MLT1J2 LTR MaLR -14 436 347 377 259 53 0 chr1 238885971 238886102 -43307562 - MLT1J2 LTR MaLR -237 213 76 314 238 94 74 chr1 238886309 238886512 -43307152 - L1ME4a LINE L1 -13 6108 5896 1719 64 0 28 chr1 238886512 238886730 -43306934 - AluY SINE Alu -17 294 83 314 238 94 74 chr1 238886730 238886825 -43306839 - L1ME4a LINE L1 -225 5896 5804 475 256 113 26 chr1 238886835 238887030 -43306634 - L2 LINE L2 0 3313 3102 634 133 0 0 chr1 238887065 238887155 -43306509 - AluSg/x SINE Alu -9 301 212 322 299 56 19 chr1 238887155 238887262 -43306402 - L2 LINE L2 -237 3035 2925 481 327 29 39 chr1 238887276 238887481 -43306183 - L2 LINE L2 -547 2767 2565 230 314 8 25 chr1 238888298 238888416 -43305248 + (TCTCTG)n Simple_repeat Simple_repeat 1 116 0 1792 113 0 8 chr1 238888555 238888812 -43304852 - MER51B LTR ERV1 0 377 123 226 322 33 11 chr1 238889146 238889236 -43304428 - L2 LINE L2 -19 3294 3203 304 315 157 11 chr1 238889404 238889582 -43304082 - L3b LINE CR1 -277 1306 1103 2211 96 0 0 chr1 238889635 238889941 -43303723 + AluSc SINE Alu 1 306 0 529 174 11 0 chr1 238892270 238892362 -43301302 - Tigger7 DNA MER2_type -5 2482 2390 1224 207 89 4 chr1 238892367 238892613 -43301051 - Tigger7 DNA MER2_type -466 267 1 700 268 115 39 chr1 238892803 238893375 -43300289 - L1MEc LINE L1 -2572 3643 3028 438 338 35 35 chr1 238893453 238893767 -43299897 - L1MEc LINE L1 -4214 2182 1869 2621 191 31 0 chr1 238893819 238894264 -43299400 + LOR1b LTR ERV1 1 459 -2 298 342 162 13 chr1 238894651 238894879 -43298785 - MIR SINE MIR 0 262 1 1095 196 19 10 chr1 238895110 238895319 -43298345 + MER20 DNA MER1_type 5 215 -4 358 323 52 105 chr1 238895330 238895404 -43298260 - L2 LINE L2 -11 3261 3185 2432 85 0 0 chr1 238895404 238895698 -43297966 + AluSc SINE Alu 3 296 -13 358 323 52 105 chr1 238895698 238896288 -43297376 - L2 LINE L2 -87 3185 2628 244 294 113 44 chr1 238896342 238896502 -43297162 - L2 LINE L2 -683 2631 2461 352 304 11 0 chr1 238896504 238896596 -43297068 + L2 LINE L2 3210 3302 -11 203 335 85 22 chr1 238896752 238896976 -43296688 - L2 LINE L2 -1024 2290 2053 769 180 0 0 chr1 238897660 238897782 -43295882 + MER5A DNA MER1_type 1 122 -67 1516 230 60 40 chr1 238897784 238898237 -43295427 - MLT1C LTR MaLR 0 467 6 533 169 275 21 chr1 238898314 238898456 -43295208 + MER5B DNA MER1_type 1 178 0 275 219 31 94 chr1 238898531 238898627 -43295037 + MIR SINE MIR 122 211 -51 279 331 49 28 chr1 238899282 238899424 -43294240 - L2 LINE L2 -252 3061 2917 677 307 52 24 chr1 238899426 238899716 -43293948 - MLT1L LTR MaLR -172 443 146 993 207 69 0 chr1 238899976 238900179 -43293485 - MER20 DNA MER1_type 0 219 3 392 185 8 3 chr1 238900228 238900353 -43293311 - MER96 DNA MER1_type? 0 175 15 8447 160 3 46 chr1 238900970 238901227 -43292437 + L1PA14 LINE L1 3912 4179 -1982 2331 115 0 3 chr1 238901227 238901540 -43292124 + AluSx SINE Alu 1 312 0 8447 160 3 46 chr1 238901540 238903208 -43290456 + L1PA14 LINE L1 4179 5777 -384 2229 90 0 0 chr1 238903208 238903487 -43290177 + AluY SINE Alu 1 279 -32 8447 160 3 46 chr1 238903487 238903857 -43289807 + L1PA14 LINE L1 5777 6161 0 258 116 0 0 chr1 238904710 238904753 -43288911 + (CA)n Simple_repeat Simple_repeat 2 44 0 2275 119 3 0 chr1 238905459 238905769 -43287895 + AluSx SINE Alu 1 311 -1 286 291 94 39 chr1 238905885 238906012 -43287652 + MLT1J2 LTR MaLR 291 424 -26 250 355 9 9 chr1 238906042 238906149 -43287515 - MIR SINE MIR -62 146 40 806 199 30 10 chr1 238906418 238906619 -43287045 - LTR54 LTR ERV1 0 510 306 1264 183 20 16 chr1 238906980 238907226 -43286438 - AluJb SINE Alu -25 287 41 399 38 0 19 chr1 238907326 238907379 -43286285 - MADE1 DNA Mariner 0 80 29 1847 191 21 9 chr1 238907392 238907728 -43285936 - MER61A LTR ERV1 -3 340 1 597 271 123 35 chr1 238908132 238908416 -43285248 - MLT1J1 LTR MaLR -3 443 135 376 349 55 17 chr1 238908523 238908758 -43284906 - L2 LINE L2 -2296 1018 775 604 291 56 5 chr1 238908828 238909041 -43284623 + MIR SINE MIR 13 236 -26 2146 121 3 0 chr1 238909518 238909808 -43283856 + AluSx SINE Alu 6 296 -16 471 228 200 0 chr1 238909808 238909953 -43283711 + MER5A DNA MER1_type 16 189 0 2311 153 63 0 chr1 238910489 238910868 -43282796 + MER57A LTR ERV1 1 403 0 1880 228 68 30 chr1 238911298 238911824 -43281840 + L1MC4a LINE L1 7263 7808 0 640 113 44 6 chr1 238912015 238912174 -43281490 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 189 180 0 0 chr1 238912183 238912233 -43281431 + (CTAG)n Simple_repeat Simple_repeat 2 51 0 1906 171 17 90 chr1 238912234 238912655 -43281009 + MLT1B LTR MaLR 1 390 0 931 363 45 31 chr1 238912870 238913383 -43280281 + L3 LINE CR1 1056 1575 -2 331 306 18 9 chr1 238913496 238913607 -43280057 - MER5B DNA MER1_type -59 119 8 494 306 24 75 chr1 238914150 238914402 -43279262 - MIR SINE MIR 0 262 24 180 0 0 0 chr1 238914736 238914756 -43278908 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 358 289 114 40 chr1 238915047 238915198 -43278466 + L1ME4a LINE L1 4516 4655 -1491 1965 79 0 4 chr1 238915198 238915474 -43278190 - AluY SINE Alu 0 311 40 358 289 114 40 chr1 238915474 238915595 -43278069 + L1ME4a LINE L1 4655 4808 -1338 354 270 73 0 chr1 238916700 238916837 -43276827 + MER103 DNA DNA 6 152 -14 22 70 0 0 chr1 238916985 238917028 -43276636 + AT_rich Low_complexity Low_complexity 1 43 0 186 43 0 0 chr1 238917151 238917174 -43276490 + (CAA)n Simple_repeat Simple_repeat 2 24 0 189 74 0 0 chr1 238917321 238917348 -43276316 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 1481 263 102 26 chr1 238917363 238917949 -43275715 + L1ME4a LINE L1 5315 5981 -140 1903 148 7 10 chr1 238917949 238918254 -43275410 + AluJb SINE Alu 1 304 -8 1481 263 102 26 chr1 238918254 238918405 -43275259 + L1ME4a LINE L1 5981 6119 -2 1923 135 10 26 chr1 238921433 238921737 -43271927 + AluSx SINE Alu 1 299 -13 315 0 0 0 chr1 238923291 238923326 -43270338 + (TA)n Simple_repeat Simple_repeat 1 35 0 1887 171 53 58 chr1 238923481 238923879 -43269785 + LTR32 LTR ERVL 16 411 -60 721 232 0 7 chr1 238923893 238924044 -43269620 + LTR32 LTR ERVL 322 471 0 780 253 98 25 chr1 238924109 238924354 -43269310 - L2 LINE L2 -4 3309 3047 737 196 42 42 chr1 238924429 238924618 -43269046 - L2 LINE L2 -654 2660 2472 219 229 29 14 chr1 238926356 238926426 -43267238 + A-rich Low_complexity Low_complexity 5 75 0 1491 227 45 11 chr1 238926666 238927019 -43266645 + MLT1A1 LTR MaLR 1 365 0 3852 129 7 12 chr1 238927019 238927586 -43266078 + MER34B LTR ERV1 2 565 0 368 300 76 43 chr1 238927688 238927834 -43265830 - L2 LINE L2 -508 2806 2649 2009 128 0 56 chr1 238927834 238928154 -43265510 + AluSx SINE Alu 1 302 -10 368 300 76 43 chr1 238928154 238928217 -43265447 - L2 LINE L2 -665 2649 2590 27 0 0 0 chr1 238928713 238928740 -43264924 + AT_rich Low_complexity Low_complexity 1 27 0 190 221 4 0 chr1 238930056 238930102 -43263562 + MIR SINE MIR 37 84 -124 1283 221 97 49 chr1 238930424 238930849 -43262815 - MLT1D LTR MaLR 0 505 61 348 300 95 29 chr1 238930869 238931079 -43262585 - L2 LINE L2 -119 3194 2971 228 270 50 40 chr1 238932157 238932257 -43261407 + MIR3 SINE MIR 99 199 -9 876 264 37 8 chr1 238932262 238932508 -43261156 - MIR SINE MIR -2 260 8 2267 112 0 3 chr1 238935041 238935346 -43258318 + AluSq SINE Alu 1 304 -9 516 293 156 14 chr1 238935440 238935652 -43258012 + L2 LINE L2 3072 3313 0 292 308 42 17 chr1 238935759 238935879 -43257785 - L2 LINE L2 -16 3297 3175 322 287 21 11 chr1 238936625 238936719 -43256945 - L1MC/D LINE L1 -2375 5433 5339 192 67 22 44 chr1 238937499 238937544 -43256120 + (CA)n Simple_repeat Simple_repeat 1 44 0 364 271 0 107 chr1 238937766 238937888 -43255776 + MIR SINE MIR 41 149 -59 187 235 0 0 chr1 238938003 238938037 -43255627 + MIR3 SINE MIR 149 182 -26 2184 108 3 3 chr1 238938932 238939238 -43254426 + AluSq SINE Alu 1 306 -7 193 235 96 132 chr1 238940260 238940300 -43253364 - MIR3 SINE MIR -63 145 105 207 0 0 0 chr1 238940300 238940323 -43253341 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 193 235 96 132 chr1 238940323 238940418 -43253246 - MIR3 SINE MIR -103 105 15 191 61 30 0 chr1 238940583 238940616 -43253048 + (CA)n Simple_repeat Simple_repeat 2 35 0 208 213 43 21 chr1 238940965 238941059 -43252605 + (TA)n Simple_repeat Simple_repeat 1 96 0 22 0 0 0 chr1 238941059 238941081 -43252583 + AT_rich Low_complexity Low_complexity 1 22 0 240 143 0 0 chr1 238941554 238941596 -43252068 + (T)n Simple_repeat Simple_repeat 1 42 0 621 48 0 0 chr1 238941596 238941680 -43251984 - L1PA2 LINE L1 0 6155 6072 2280 114 0 0 chr1 238941683 238941982 -43251682 - AluSx SINE Alu -11 301 3 258 273 13 26 chr1 238942370 238942447 -43251217 - MARNA DNA Mariner -61 525 450 314 361 89 11 chr1 238942458 238942638 -43251026 + MIR3 SINE MIR 10 203 -5 809 253 25 12 chr1 238942701 238942946 -43250718 - MARNA DNA Mariner -203 383 136 2171 76 0 0 chr1 238943199 238943488 -43250176 - AluSc SINE Alu 0 304 16 351 269 244 0 chr1 238943504 238943660 -43250004 - MIR SINE MIR 0 262 69 267 222 71 63 chr1 238943779 238943905 -43249759 - LTR16C LTR ERVL 0 491 365 193 350 42 49 chr1 238944183 238944326 -43249338 + L2 LINE L2 2913 3054 -218 2094 136 3 0 chr1 238944396 238944698 -43248966 - AluSx SINE Alu -9 303 1 243 400 53 0 chr1 238945163 238945258 -43248406 + L2 LINE L2 3111 3210 -62 683 292 29 45 chr1 238945323 238945566 -43248098 - MIR SINE MIR 0 262 24 207 100 0 0 chr1 238945651 238945681 -43247983 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 618 175 159 42 chr1 238945685 238945874 -43247790 + MER20 DNA MER1_type 1 211 -8 1990 146 7 10 chr1 238947041 238947343 -43246321 + AluSx SINE Alu 1 301 -11 207 229 21 0 chr1 238947415 238947463 -43246201 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 204 371 113 39 chr1 238948086 238948369 -43245295 + L2 LINE L2 82 385 -2929 727 281 66 37 chr1 238948374 238948616 -43245048 + MIR SINE MIR 7 255 -7 249 269 103 55 chr1 238949048 238949176 -43244488 - MIR SINE MIR -65 143 30 183 259 96 96 chr1 238949976 238950111 -43243553 - L2 LINE L2 -15 3298 3164 22 56 0 0 chr1 238950381 238950417 -43243247 + AT_rich Low_complexity Low_complexity 1 36 0 348 339 75 16 chr1 238950488 238950674 -43242990 + L3 LINE CR1 1325 1521 -56 291 146 0 0 chr1 238952198 238952253 -43241411 + (TATG)n Simple_repeat Simple_repeat 4 58 0 2579 50 0 3 chr1 238952308 238952611 -43241053 + AluY SINE Alu 1 302 -9 22 0 0 0 chr1 238952911 238952933 -43240731 + AT_rich Low_complexity Low_complexity 1 22 0 258 234 16 31 chr1 238953097 238953161 -43240503 + L2 LINE L2 3249 3311 -2 256 305 48 9 chr1 238953479 238953584 -43240080 - MIR SINE MIR -137 125 17 * 2170 270 108 38 chr1 238953542 238954801 -43238863 + L2 LINE L2 1880 3313 0 318 386 14 15 chr1 238955244 238955407 -43238257 + MIR SINE MIR 2 161 -63 28 48 0 0 chr1 238956223 238956265 -43237399 + AT_rich Low_complexity Low_complexity 1 42 0 695 236 73 0 chr1 238956527 238956692 -43236972 - MER5B DNA MER1_type 0 178 2 1842 142 137 11 chr1 238956994 238957367 -43236297 - MSTA LTR MaLR -3 425 6 1120 153 63 93 chr1 238957815 238958148 -43235516 - MER33 DNA MER1_type 0 324 2 181 339 101 18 chr1 238958919 238959028 -43234636 + MIR SINE MIR 29 146 -62 2839 150 27 7 chr1 238960346 238960900 -43232764 + L1MA8 LINE L1 4321 4885 -1261 * 5405 122 22 22 chr1 238960893 238961872 -43231792 + L1MA8 LINE L1 5309 6287 -4 398 238 12 0 chr1 238961931 238962011 -43231653 + Charlie1a DNA MER1_type 2 82 -1373 5657 180 22 30 chr1 238962018 238963036 -43230628 - L1MC1 LINE L1 -17 6316 5308 2073 107 10 3 chr1 238963036 238963326 -43230338 - AluSx SINE Alu -20 292 1 5657 180 22 30 chr1 238963326 238963749 -43229915 - L1MC1 LINE L1 -1025 5308 4883 618 206 85 0 chr1 238963754 238963919 -43229745 + Charlie1a DNA MER1_type 69 247 -1208 180 278 0 0 chr1 238963924 238963996 -43229668 + GA-rich Low_complexity Low_complexity 1 72 0 3763 191 29 49 chr1 238964008 238964375 -43229289 + Charlie1a DNA MER1_type 256 629 -2132 2163 101 3 33 chr1 238964375 238964682 -43228982 - AluSp SINE Alu -15 298 1 3763 191 29 49 chr1 238964682 238965049 -43228615 + Charlie1a DNA MER1_type 629 967 -1794 1804 171 20 13 chr1 238965049 238965378 -43228286 + AluJo SINE Alu 1 312 0 3763 191 29 49 chr1 238965378 238965634 -43228030 + Charlie1a DNA MER1_type 967 1227 -228 1425 128 12 16 chr1 238966556 238966806 -43226858 + LTR1 LTR ERV1 1 249 -536 5963 108 72 79 chr1 238966904 238968938 -43224726 - pTR5 LTR ERV1 0 8399 66 299 194 0 0 chr1 238968934 238968996 -43224668 - HERV9 LTR ERV1 -835 7564 7503 * 774 141 48 83 chr1 238968994 238969307 -43224357 - HERV9 LTR ERV1 -5755 1141 840 2819 108 13 21 chr1 238969352 238969826 -43223838 + LTR1 LTR ERV1 316 785 0 408 353 21 58 chr1 238969926 238970116 -43223548 + MIR3 SINE MIR 11 193 -15 199 259 35 17 chr1 238970156 238970214 -43223450 - MIR SINE MIR -108 100 42 21 0 0 0 chr1 238970686 238970707 -43222957 + AT_rich Low_complexity Low_complexity 1 21 0 2813 13 0 0 chr1 238970811 238971118 -43222546 - AluY SINE Alu -4 307 1 379 335 19 25 chr1 238971286 238971447 -43222217 + MER5A DNA MER1_type 2 161 -28 348 293 89 27 chr1 238971432 238971657 -43222007 + L2 LINE L2 1859 2097 -1217 * 294 356 34 0 chr1 238971814 238971932 -43221732 + L2 LINE L2 3151 3272 0 21 0 0 0 chr1 238971933 238971954 -43221710 + AT_rich Low_complexity Low_complexity 1 21 0 450 289 0 0 chr1 238972713 238972817 -43220847 - MIR3 SINE MIR -48 160 57 302 294 106 56 chr1 238974032 238974192 -43219472 + MIR3 SINE MIR 35 202 -6 288 297 0 0 chr1 238974445 238974536 -43219128 + T-rich Low_complexity Low_complexity 1 91 0 241 311 118 0 chr1 238974684 238974803 -43218861 + MIR SINE MIR 78 210 -52 249 288 0 14 chr1 238975822 238975895 -43217769 - L2 LINE L2 -1 3271 3200 644 297 70 23 chr1 238976593 238977207 -43216457 - L1ME LINE L1 -387 5783 5156 471 330 78 22 chr1 238977215 238977576 -43216088 - L1ME LINE L1 -1037 5109 4729 1935 226 43 16 chr1 238978587 238979100 -43214564 + MER74A LTR ERVL 1 527 -31 1130 273 96 33 chr1 238979256 238979685 -43213979 - LTR16B LTR ERVL -8 456 1 972 159 0 0 chr1 238980003 238980179 -43213485 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 264 314 180 29 chr1 238980732 238980977 -43212687 + L2 LINE L2 1139 1420 -1894 313 259 267 0 chr1 238981003 238981119 -43212545 + L2 LINE L2 2600 2746 -568 570 369 49 55 chr1 238981267 238981633 -43212031 + L2 LINE L2 2909 3272 0 1585 108 39 0 chr1 238982913 238983173 -43210491 + L1MA3 LINE L1 6034 6303 -2 364 344 27 4 chr1 238983304 238983456 -43210208 - MIR SINE MIR -67 141 1 576 166 76 54 chr1 238984129 238984252 -43209412 + L1MC4a LINE L1 7154 7273 -721 2024 169 26 10 chr1 238984252 238984636 -43209028 - MLT1B LTR MaLR 0 390 1 576 166 76 54 chr1 238984636 238984677 -43208987 + L1MC4a LINE L1 7273 7497 -497 1940 249 70 78 chr1 238984737 238986265 -43207399 - L1MCc LINE L1 -4598 2524 818 862 294 51 49 chr1 238986363 238986589 -43207075 - L1MCc LINE L1 -5826 597 373 2104 106 0 7 chr1 238986589 238986872 -43206792 + AluSg SINE Alu 24 304 -6 862 294 51 49 chr1 238986872 238987216 -43206448 - L1MCc LINE L1 -6050 373 26 240 275 25 0 chr1 238987419 238987499 -43206165 - L1M4 LINE L1 -3377 2769 2688 327 343 14 34 chr1 238987882 238988028 -43205636 - HAL1b LINE L1 -656 692 550 2663 42 0 3 chr1 238988172 238988483 -43205181 + AluYa5 SINE Alu 1 310 -1 314 286 30 45 chr1 238988961 238989094 -43204570 - L1ME LINE L1 -467 5654 5524 1654 195 63 59 chr1 238990446 238990924 -43202740 + MLT2B1 LTR ERVL 1 480 -40 250 70 23 23 chr1 238990972 238991015 -43202649 + MLT2B1 LTR ERVL 472 514 -6 261 279 13 0 chr1 238991648 238991727 -43201937 - MIR3 SINE MIR -16 192 113 23 78 0 0 chr1 238992788 238992839 -43200825 + AT_rich Low_complexity Low_complexity 1 51 0 991 168 6 12 chr1 238992960 238993121 -43200543 + FRAM SINE Alu 1 158 -18 948 301 104 37 chr1 238993158 238993649 -43200015 + MLT1G1 LTR MaLR 72 595 0 237 341 16 0 chr1 238993662 238993788 -43199876 + MLT1G1-int LTR MaLR 15 142 -1229 754 290 32 0 chr1 238993790 238994069 -43199595 + MLT1G1-int LTR MaLR 292 579 -792 2215 91 3 17 chr1 238994130 238994427 -43199237 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr1 238994633 238994654 -43199010 + AT_rich Low_complexity Low_complexity 1 21 0 4981 189 45 13 chr1 238994825 238996758 -43196906 + L1MB8 LINE L1 3958 5956 -222 1220 210 34 8 chr1 238996774 238997127 -43196537 + L1M4 LINE L1 4302 4663 -1483 748 186 14 56 chr1 238997130 238997345 -43196319 + L1MB8 LINE L1 5964 6169 -9 505 208 89 48 chr1 238997355 238997523 -43196141 + L1MD3 LINE L1 7647 7821 -174 1000 236 171 78 chr1 238998098 238998624 -43195040 + MLT1G1 LTR MaLR 1 575 -20 7645 23 5 26 chr1 238998792 239000417 -43193247 - L1PA3 LINE L1 -1 6154 4548 653 13 0 0 chr1 239000417 239000494 -43193170 - L1P LINE L1 -1517 4629 4553 36504 39 2 2 chr1 239000494 239005127 -43188537 - L1P LINE L1 -1512 4634 1 255 242 22 11 chr1 239005131 239005222 -43188442 - L1ME2 LINE L1 -64 6100 6009 489 298 19 6 chr1 239005224 239005382 -43188282 - MER63A DNA MER1_type 0 210 51 1847 262 43 24 chr1 239005437 239006206 -43187458 - L1ME2 LINE L1 -151 6013 5222 651 99 0 0 chr1 239006206 239006307 -43187357 + (TCTA)n Simple_repeat Simple_repeat 3 103 0 1847 262 43 24 chr1 239006307 239006376 -43187288 - L1ME2 LINE L1 -942 5222 5156 2194 135 3 0 chr1 239006504 239006815 -43186849 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 239006983 239007007 -43186657 + AT_rich Low_complexity Low_complexity 1 24 0 1626 248 69 28 chr1 239007011 239007439 -43186225 - L1ME2 LINE L1 -290 5874 5465 405 0 0 0 chr1 239007447 239007492 -43186172 + (TG)n Simple_repeat Simple_repeat 1 45 0 1819 170 7 3 chr1 239007492 239007771 -43185893 - AluSx SINE Alu -29 283 1 1626 248 69 28 chr1 239007771 239008134 -43185530 - L1ME2 LINE L1 -699 5465 4875 1692 229 47 45 chr1 239008155 239009015 -43184649 - L1M4 LINE L1 -743 5472 4626 3118 143 21 0 chr1 239009015 239009539 -43184125 - LTR26 LTR ERV1 0 603 69 744 279 40 9 chr1 239009632 239009958 -43183706 - L1M4 LINE L1 -1860 4355 4020 522 143 44 0 chr1 239010002 239010093 -43183571 + MSTC LTR MaLR 1 95 -333 1679 170 0 63 chr1 239010544 239010891 -43182773 + MSTC LTR MaLR 85 409 -19 1035 293 67 27 chr1 239010898 239011801 -43181863 - L1M4 LINE L1 -2221 3994 3040 288 297 46 15 chr1 239011859 239012125 -43181539 - L1MEc LINE L1 -4738 1644 1202 1990 194 31 6 chr1 239012159 239012694 -43180970 - LTR43 LTR ERV1 0 602 1 1456 246 55 2 chr1 239012695 239013204 -43180460 - L1MEc LINE L1 -5042 1354 819 1722 85 0 5 chr1 239013207 239013431 -43180233 - AluY SINE Alu -6 305 83 960 68 0 0 chr1 239013431 239013548 -43180116 - AluY SINE Alu -62 249 133 2192 113 0 3 chr1 239013548 239013849 -43179815 - AluY SINE Alu -11 300 1 812 263 51 66 chr1 239013862 239014329 -43179335 - L1MEc LINE L1 -5582 814 355 689 280 67 10 chr1 239014309 239014695 -43178969 - L1MCc LINE L1 -4887 1536 1129 * 234 275 22 0 chr1 239015522 239015613 -43178051 - L1MCc LINE L1 -6313 110 18 190 374 111 0 chr1 239015786 239015885 -43177779 - MIR SINE MIR -78 130 21 531 289 104 19 chr1 239017800 239018011 -43175653 - L2 LINE L2 -1 3312 3084 353 296 130 25 chr1 239018642 239018847 -43174817 + MIR SINE MIR 11 234 -28 492 199 88 18 chr1 239019079 239019250 -43174414 - L1MEc LINE L1 -5438 958 776 1408 252 85 21 chr1 239020521 239021037 -43172627 - MLT1H LTR MaLR 0 549 1 697 273 169 36 chr1 239021545 239021930 -43171734 + MLT1H LTR MaLR 86 521 -28 241 292 31 0 chr1 239022200 239022265 -43171399 - MIR SINE MIR -64 144 78 768 158 0 0 chr1 239022308 239022422 -43171242 - FLAM_C SINE Alu -13 130 17 822 165 0 0 chr1 239022600 239022733 -43170931 + FLAM_C SINE Alu 1 133 0 224 293 112 26 chr1 239022896 239023012 -43170652 + L3 LINE CR1 1450 1575 -2 228 314 82 100 chr1 239023103 239023371 -43170293 + L2 LINE L2 1973 2231 -1083 1120 252 98 19 chr1 239023371 239023748 -43169916 + MLT1I LTR MaLR 1 407 -2 228 314 82 100 chr1 239023748 239023918 -43169746 + L2 LINE L2 2231 2403 -911 204 348 109 27 chr1 239024042 239024263 -43169401 + L2 LINE L2 2568 2806 -508 210 326 54 54 chr1 239024608 239024737 -43168927 + L2 LINE L2 3163 3291 -22 180 77 0 0 chr1 239024744 239024770 -43168894 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 182 261 150 83 chr1 239025729 239025909 -43167755 - L2 LINE L2 0 3313 3122 230 352 150 13 chr1 239025983 239026210 -43167454 - L2 LINE L2 -338 2976 2719 909 275 9 0 chr1 239026298 239026520 -43167144 + MER58A DNA MER1_type 1 224 0 186 43 0 0 chr1 239026551 239026574 -43167090 + (A)n Simple_repeat Simple_repeat 1 23 0 192 235 41 71 chr1 239027042 239027140 -43166524 - MIR SINE MIR -89 173 79 257 282 28 0 chr1 239027160 239027231 -43166433 + MIR SINE MIR 8 80 -182 314 360 75 5 chr1 239027404 239027590 -43166074 - MIR SINE MIR -55 207 9 282 254 79 56 chr1 239028728 239028854 -43164810 + MIR3 SINE MIR 3 131 -77 2501 57 3 0 chr1 239028858 239029157 -43164507 - AluY SINE Alu -11 300 1 218 320 100 10 chr1 239030033 239030133 -43163531 + L2 LINE L2 3200 3308 -5 388 333 7 28 chr1 239030155 239030296 -43163368 + MIR3 SINE MIR 70 207 -1 188 326 33 76 chr1 239031510 239031602 -43162062 - L2 LINE L2 0 3272 3185 2435 99 0 0 chr1 239031658 239031970 -43161694 - AluSq SINE Alu -1 312 1 21 36 0 0 chr1 239031986 239032014 -43161650 + AT_rich Low_complexity Low_complexity 1 28 0 216 100 0 25 chr1 239032438 239032478 -43161186 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 27 0 0 0 chr1 239032734 239032761 -43160903 + AT_rich Low_complexity Low_complexity 1 27 0 268 276 109 68 chr1 239033138 239033641 -43160023 + L1MC4a LINE L1 3660 4183 -1963 282 57 0 0 chr1 239033812 239033847 -43159817 + U2 snRNA snRNA 1 35 -153 1138 295 69 45 chr1 239033847 239035336 -43158328 + L1MC4a LINE L1 4400 5403 -743 388 295 66 0 chr1 239036280 239036415 -43157249 - MIR3 SINE MIR -67 141 15 216 0 0 0 chr1 239036591 239036615 -43157049 + (TG)n Simple_repeat Simple_repeat 2 25 0 212 246 45 90 chr1 239036770 239036904 -43156760 - L2 LINE L2 -10 3303 3176 913 302 90 29 chr1 239037162 239037798 -43155866 + L2 LINE L2 2640 3313 0 466 330 69 9 chr1 239039171 239039389 -43154275 + MIR SINE MIR 32 262 0 406 317 50 0 chr1 239039787 239039907 -43153757 - MIR3 SINE MIR -23 185 60 423 159 89 48 chr1 239039914 239040042 -43153622 - MLT1H LTR MaLR 0 580 461 * 468 284 38 73 chr1 239040011 239040328 -43153336 - MLT1H LTR MaLR -198 351 46 549 238 0 0 chr1 239041732 239041854 -43151810 + MIR3 SINE MIR 81 202 -6 265 169 56 0 chr1 239042419 239042490 -43151174 + CT-rich Low_complexity Low_complexity 2 76 0 381 349 30 15 chr1 239042491 239042623 -43151041 - L2 LINE L2 -1 3271 3138 432 275 145 2 chr1 239042801 239043012 -43150652 - MIR SINE MIR -6 256 19 262 327 72 13 chr1 239044145 239044298 -43149366 - MLT1I LTR MaLR -144 265 104 204 356 76 23 chr1 239044556 239044688 -43148976 - L2 LINE L2 -35 3237 3099 232 316 138 20 chr1 239044742 239044894 -43148770 - MIR SINE MIR -40 222 53 241 291 94 62 chr1 239044934 239045282 -43148382 - L2 LINE L2 -204 3068 2697 838 177 0 0 chr1 239045288 239045412 -43148252 + FRAM SINE Alu 31 154 -22 750 199 111 18 chr1 239046495 239046666 -43146998 - MER5A DNA MER1_type 0 189 3 424 292 39 13 chr1 239046856 239047010 -43146654 + MIR SINE MIR 85 242 -20 285 246 27 64 chr1 239047745 239047855 -43145809 + MIR SINE MIR 156 261 -1 2256 91 0 20 chr1 239047894 239048191 -43145473 + AluSc SINE Alu 1 291 -18 6144 50 11 6 chr1 239048192 239048947 -43144717 + SVA Other Other 654 1412 0 231 340 258 0 chr1 239048968 239049065 -43144599 + L2 LINE L2 3142 3263 -9 637 317 0 40 chr1 239049347 239049546 -43144118 - MER91A DNA MER1_type -3 193 3 190 321 62 49 chr1 239049606 239049687 -43143977 - L2 LINE L2 -55 3258 3177 523 268 48 18 chr1 239049734 239049902 -43143762 + MIR SINE MIR 35 207 -55 731 221 8 0 chr1 239050018 239050149 -43143515 + FLAM_A SINE Alu 1 132 -1 348 304 7 51 chr1 239051609 239051747 -43141917 + MIR SINE MIR 21 152 -110 279 221 77 48 chr1 239051754 239051858 -43141806 - MLT1I LTR MaLR 0 409 303 320 256 13 13 chr1 239051922 239052000 -43141664 - MLT1I LTR MaLR -318 91 14 415 318 33 26 chr1 239052550 239052701 -43140963 + MIR3 SINE MIR 30 181 -27 435 214 43 60 chr1 239053120 239053237 -43140427 + L2 LINE L2 3199 3313 0 259 331 50 22 chr1 239053677 239053816 -43139848 + MIR SINE MIR 29 171 -91 356 244 15 61 chr1 239053852 239053983 -43139681 - L2 LINE L2 0 3313 3189 300 391 17 17 chr1 239054561 239054740 -43138924 - MIR3 SINE MIR -11 197 19 379 306 86 19 chr1 239055553 239055762 -43137902 - MIR SINE MIR -39 223 1 1634 56 0 28 chr1 239055796 239056011 -43137653 + AluY SINE Alu 100 308 -3 296 302 52 26 chr1 239057718 239057834 -43135830 - L2 LINE L2 -4 3309 3191 263 271 109 26 chr1 239058069 239058212 -43135452 + MIR SINE MIR 2 157 -65 2090 127 31 88 chr1 239058390 239058776 -43134888 - THE1B LTR MaLR 0 364 1 545 0 15 0 chr1 239060164 239060229 -43133435 + (TG)n Simple_repeat Simple_repeat 2 67 0 245 88 44 59 chr1 239060232 239060300 -43133364 + GA-rich Low_complexity Low_complexity 3 69 0 904 32 19 44 chr1 239060324 239060482 -43133182 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 794 78 21 21 chr1 239060592 239060733 -43132931 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 687 174 26 17 chr1 239060772 239061011 -43132653 + GA-rich Low_complexity Low_complexity 1 236 -373 1915 143 48 0 chr1 239061011 239061304 -43132360 + AluSx SINE Alu 6 312 0 687 174 26 17 chr1 239061304 239061376 -43132288 + GA-rich Low_complexity Low_complexity 236 609 0 915 101 28 17 chr1 239061413 239061591 -43132073 + GA-rich Low_complexity Low_complexity 1 180 0 182 36 0 36 chr1 239061595 239061623 -43132041 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr1 239061958 239061978 -43131686 + (TG)n Simple_repeat Simple_repeat 2 21 0 219 321 62 0 chr1 239063500 239063581 -43130083 + L2 LINE L2 3199 3284 -29 286 329 0 0 chr1 239064256 239064338 -43129326 + L2 LINE L2 3186 3267 -5 234 348 89 19 chr1 239066046 239066204 -43127460 - L2 LINE L2 -2 3270 3102 745 287 82 42 chr1 239066616 239066996 -43126668 - MLT1J LTR MaLR -103 408 14 1338 203 39 88 chr1 239067332 239067716 -43125948 - MLT1A1 LTR MaLR 0 365 1 545 342 97 35 chr1 239067919 239068583 -43125081 - L2 LINE L2 -2 3270 2576 445 278 40 0 chr1 239068629 239068755 -43124909 + MER58A DNA MER1_type 25 155 0 21 0 0 0 chr1 239069521 239069542 -43124122 + AT_rich Low_complexity Low_complexity 1 21 0 545 208 10 34 chr1 239069750 239069912 -43123752 - MER5A DNA MER1_type -33 145 4 228 240 213 0 chr1 239070299 239070374 -43123290 + MIR SINE MIR 112 202 -60 878 290 45 23 chr1 239070374 239070760 -43122904 - LTR16C LTR ERVL 0 476 98 206 260 0 0 chr1 239071604 239071654 -43122010 + (TA)n Simple_repeat Simple_repeat 1 50 0 1716 226 21 16 chr1 239072570 239072948 -43120716 - MLT1C LTR MaLR 0 467 88 1316 217 54 84 chr1 239072948 239072998 -43120666 - MLT2B1 LTR ERVL 0 520 470 216 67 0 0 chr1 239072998 239073028 -43120636 + (CA)n Simple_repeat Simple_repeat 1 30 0 1316 217 54 84 chr1 239073028 239073383 -43120281 - MLT2B1 LTR ERVL -50 470 127 * 2706 188 11 11 chr1 239073377 239073855 -43119809 - MLT2B1 LTR ERVL -41 479 2 180 209 0 0 chr1 239075153 239075159 -43118505 + (TA)n Simple_repeat Simple_repeat 1 6 -37 2143 134 3 0 chr1 239075159 239075466 -43118198 + AluSq SINE Alu 1 308 -5 180 209 0 0 chr1 239075466 239075502 -43118162 + (TA)n Simple_repeat Simple_repeat 5 43 0 1698 150 88 4 chr1 239075507 239075781 -43117883 + AluSx SINE Alu 1 297 -15 1868 174 3 0 chr1 239078049 239078353 -43115311 - AluJb SINE Alu -7 305 1 21 0 0 0 chr1 239079948 239079969 -43113695 + AT_rich Low_complexity Low_complexity 1 21 0 1720 178 43 0 chr1 239080748 239081024 -43112640 + AluSx SINE Alu 12 299 -13 31 0 0 0 chr1 239081024 239081055 -43112609 + AT_rich Low_complexity Low_complexity 1 31 0 668 278 25 37 chr1 239081279 239081524 -43112140 + L3 LINE CR1 1333 1574 -3 264 339 24 48 chr1 239081714 239081838 -43111826 - L3 LINE CR1 -304 1273 1153 333 68 0 0 chr1 239082214 239082258 -43111406 + (TA)n Simple_repeat Simple_repeat 2 45 0 2213 116 3 0 chr1 239082258 239082552 -43111112 - AluSg SINE Alu -15 295 1 1993 211 40 9 chr1 239082717 239083138 -43110526 + MLT1C LTR MaLR 34 467 0 186 71 0 0 chr1 239083555 239083583 -43110081 + (CAG)n Simple_repeat Simple_repeat 3 30 0 21893 152 18 16 chr1 239083976 239086492 -43107172 - L1MA1 LINE L1 0 7721 5211 2078 76 8 15 chr1 239086492 239086756 -43106908 - AluY SINE Alu -15 296 35 21893 152 18 16 chr1 239086756 239091922 -43101742 - L1MA1 LINE L1 -2510 5211 16 414 332 86 2 chr1 239092807 239093006 -43100658 - MIR SINE MIR -12 250 38 788 161 0 0 chr1 239093021 239093139 -43100525 + AluJo SINE Alu 2 119 -193 731 228 62 19 chr1 239093209 239093371 -43100293 + AluJo SINE Alu 129 297 -15 372 287 29 7 chr1 239093724 239093860 -43099804 - MIR SINE MIR -10 252 114 193 379 78 10 chr1 239094717 239094820 -43098844 - L3b LINE CR1 -22 1561 1452 226 312 32 104 chr1 239095431 239095539 -43098125 - L2 LINE L2 0 3313 3218 1877 204 64 0 chr1 239095539 239095882 -43097782 + MLT1A1 LTR MaLR 1 365 0 226 312 32 104 chr1 239095882 239095927 -43097737 - L2 LINE L2 -95 3218 3171 424 329 82 0 chr1 239096099 239096257 -43097407 + L2 LINE L2 3119 3289 -24 917 136 6 0 chr1 239096261 239096438 -43097226 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 1460 145 34 98 chr1 239096546 239096871 -43096793 + L1ME1 LINE L1 5371 5674 -492 261 186 0 0 chr1 239096871 239096914 -43096750 + MLT1A1 LTR MaLR 1 43 -353 1338 206 0 4 chr1 239096916 239097164 -43096500 + AluJo SINE Alu 49 295 -17 1090 166 52 129 chr1 239097168 239097517 -43096147 + MLT1A1 LTR MaLR 44 365 0 746 218 96 59 chr1 239097519 239097969 -43095695 + L1ME1 LINE L1 5675 6164 -2 530 337 48 16 chr1 239098116 239098365 -43095299 - MIR SINE MIR 0 262 6 363 302 102 69 chr1 239098558 239098803 -43094861 + L2 LINE L2 2533 2785 -529 774 220 14 0 chr1 239098848 239098989 -43094675 - FAM SINE Alu -36 149 7 877 319 53 45 chr1 239099007 239099102 -43094562 + L2 LINE L2 2827 2920 -393 1129 186 83 141 chr1 239099102 239099499 -43094165 + MLT1A2 LTR MaLR 1 374 0 877 319 53 45 chr1 239099499 239099870 -43093794 + L2 LINE L2 2920 3297 -16 29 28 0 0 chr1 239100023 239100059 -43093605 + AT_rich Low_complexity Low_complexity 1 36 0 788 151 28 0 chr1 239101664 239101843 -43091821 + L1MC1 LINE L1 6110 6333 0 307 296 70 35 chr1 239102073 239102215 -43091449 + MIR SINE MIR 25 171 -91 286 317 128 18 chr1 239103329 239103493 -43090171 - MIR3 SINE MIR 0 208 27 248 291 119 78 chr1 239104825 239105069 -43088595 - L2 LINE L2 0 3272 3019 451 252 69 23 chr1 239105355 239105486 -43088178 + L2 LINE L2 3136 3272 0 890 261 11 41 chr1 239106357 239106625 -43087039 + MIR SINE MIR 3 262 0 237 118 0 0 chr1 239107542 239107576 -43086088 + L2 LINE L2 3213 3246 -26 351 254 54 124 chr1 239107717 239107902 -43085762 + MER5B DNA MER1_type 3 174 -4 273 146 0 0 chr1 239108290 239108338 -43085326 + (TG)n Simple_repeat Simple_repeat 1 48 0 432 193 102 9 chr1 239108550 239108749 -43084915 - MER58B DNA MER1_type 0 341 45 409 336 31 8 chr1 239109957 239110085 -43083579 + MER91A DNA MER1_type 1 131 -65 270 270 45 79 chr1 239110155 239110244 -43083420 + MER91A DNA MER1_type 111 196 0 2052 144 25 63 chr1 239111081 239111337 -43082327 - MER7A DNA MER2_type -2692 346 109 2056 107 0 0 chr1 239111337 239111598 -43082066 + AluSg SINE Alu 19 279 -31 2052 144 25 63 chr1 239111598 239111703 -43081961 - MER7A DNA MER2_type -2929 109 1 27 0 0 0 chr1 239113178 239113205 -43080459 + AT_rich Low_complexity Low_complexity 1 27 0 429 309 67 10 chr1 239113461 239113655 -43080009 - MIR SINE MIR -57 205 1 301 291 12 0 chr1 239113667 239113753 -43079911 + L2 LINE L2 3185 3271 -1 511 153 34 0 chr1 239114234 239114330 -43079334 + MER5A DNA MER1_type 4 103 -86 392 0 0 20 chr1 239114888 239114937 -43078727 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 394 303 34 0 chr1 239115318 239115437 -43078227 - MIR SINE MIR -54 208 86 2892 239 19 14 chr1 239115462 239116106 -43077558 - MER82 DNA MER2_type -6 647 1 217 196 0 36 chr1 239116130 239116186 -43077478 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 1034 162 134 32 chr1 239116839 239117092 -43076572 - MER2 DNA MER2_type -26 319 41 231 305 119 0 chr1 239117470 239117588 -43076076 - MIR3 SINE MIR -6 202 71 313 336 10 0 chr1 239117629 239117733 -43075931 - 5S rRNA rRNA -2 119 15 259 231 264 0 chr1 239118901 239118992 -43074672 - L2 LINE L2 0 3272 3158 23 0 0 0 chr1 239119013 239119036 -43074628 + AT_rich Low_complexity Low_complexity 1 23 0 284 268 42 0 chr1 239119216 239119287 -43074377 - L2 LINE L2 -227 3045 2972 818 296 73 24 chr1 239119354 239119779 -43073885 - L2 LINE L2 -446 2868 2423 967 168 0 20 chr1 239120263 239120459 -43073205 - L1MB3 LINE L1 -1 6182 5991 2303 121 0 0 chr1 239120512 239120825 -43072839 + AluSq SINE Alu 1 313 0 1573 113 23 63 chr1 239121086 239121386 -43072278 - L1MB8 LINE L1 -2 6176 5889 202 270 261 27 chr1 239122097 239122208 -43071456 + L2 LINE L2 3116 3252 -20 * 228 262 125 59 chr1 239122197 239122255 -43071409 - MIR SINE MIR -22 186 133 3035 86 11 3 chr1 239122255 239122627 -43071037 - THE1C LTR MaLR 0 375 1 228 262 125 59 chr1 239122627 239122722 -43070942 - MIR SINE MIR -75 133 19 358 293 114 0 chr1 239122916 239123083 -43070581 + MIR SINE MIR 75 260 -2 248 311 107 16 chr1 239124310 239124432 -43069232 - MIR SINE MIR -6 256 124 196 289 0 0 chr1 239124453 239124505 -43069159 + MIR SINE MIR 162 213 -49 1925 215 57 27 chr1 239175215 239175774 -43017890 + Charlie2 DNA MER1_type 2041 2616 -246 472 273 21 7 chr1 239175785 239175928 -43017736 + Charlie2 DNA MER1_type 2717 2861 -1 732 226 18 0 chr1 239176042 239176206 -43017458 - L1ME LINE L1 -636 5528 5362 452 211 69 35 chr1 239176218 239176410 -43017254 - L1ME LINE L1 -725 5426 5274 267 263 0 134 chr1 239176458 239176667 -43016997 - L1P LINE L1 -2335 3811 3631 317 266 81 29 chr1 239176946 239177119 -43016545 - L1ME LINE L1 -2869 3277 3096 296 154 327 48 chr1 239177792 239177896 -43015768 + MER94 DNA DNA 2 134 0 297 286 103 32 chr1 239178905 239179031 -43014633 + MIR SINE MIR 20 154 -108 250 230 119 24 chr1 239180481 239180607 -43013057 + L1ME4a LINE L1 5715 5852 -269 25 31 0 0 chr1 239180628 239180660 -43013004 + AT_rich Low_complexity Low_complexity 1 32 0 182 208 19 0 chr1 239180701 239180754 -43012910 + GA-rich Low_complexity Low_complexity 3 56 0 347 213 78 35 chr1 239180766 239180907 -43012757 + L1ME4a LINE L1 5975 6121 0 212 270 6 0 chr1 239181221 239181380 -43012284 + (CCA)n Simple_repeat Simple_repeat 3 162 0 1490 272 16 65 chr1 239182080 239182681 -43010983 - L2 LINE L2 -4 3309 2724 322 324 67 52 chr1 239182873 239183216 -43010448 + LTR16C LTR ERVL 87 434 -57 358 270 161 0 chr1 239183261 239183398 -43010266 - MIR SINE MIR -102 160 2 499 294 127 4 chr1 239183864 239184092 -43009572 - MIR SINE MIR 0 262 7 214 420 28 14 chr1 239185586 239185729 -43007935 - L2 LINE L2 -26 3246 3102 534 208 71 66 chr1 239185945 239186157 -43007507 - ORSL DNA AcHobo -62 213 1 192 125 0 0 chr1 239187574 239187606 -43006058 + (TC)n Simple_repeat Simple_repeat 1 32 0 303 192 0 0 chr1 239187650 239187702 -43005962 - L2 LINE L2 -11 3261 3210 832 283 36 16 chr1 239187711 239187962 -43005702 - MIR SINE MIR -5 257 2 278 345 26 35 chr1 239188020 239188133 -43005531 - MIR SINE MIR -67 141 30 414 211 53 0 chr1 239188520 239188615 -43005049 - MER5A DNA MER1_type -77 112 13 225 274 148 44 chr1 239190816 239190951 -43002713 - MIR3 SINE MIR -15 193 45 2248 103 0 0 chr1 239191502 239191804 -43001860 + AluSx SINE Alu 6 307 -5 226 294 9 46 chr1 239193149 239193258 -43000406 + MER103 DNA DNA 19 123 -43 28 0 0 0 chr1 239194085 239194113 -42999551 + AT_rich Low_complexity Low_complexity 1 28 0 402 213 72 47 chr1 239195793 239195937 -42997727 - MIR SINE MIR -55 153 7 224 129 11 215 chr1 239196005 239196098 -42997566 + L2 LINE L2 3199 3272 0 347 174 210 0 chr1 239197672 239197784 -42995880 - MIR SINE MIR -10 252 115 395 259 81 27 chr1 239199055 239199240 -42994424 + MIR SINE MIR 20 214 -48 678 240 60 56 chr1 239199251 239199501 -42994163 + MIR SINE MIR 12 262 0 213 271 0 17 chr1 239199822 239199881 -42993783 + GA-rich Low_complexity Low_complexity 1 58 0 367 294 27 27 chr1 239200160 239200344 -42993320 + L1MCc LINE L1 26 209 -6214 730 176 5 104 chr1 239200370 239200563 -42993101 + MLT2B1 LTR ERVL 323 496 -24 320 178 50 0 chr1 239200579 239200680 -42992984 + (TA)n Simple_repeat Simple_repeat 1 106 0 180 0 0 0 chr1 239200705 239200725 -42992939 + (TA)n Simple_repeat Simple_repeat 2 21 0 1695 173 54 0 chr1 239200829 239201142 -42992522 + L1MD3 LINE L1 7654 7983 -12 1801 266 90 59 chr1 239201148 239202701 -42990963 + L1MCc LINE L1 1360 3138 -3984 1073 245 138 3 chr1 239202707 239202989 -42990675 + MLT1E LTR MaLR 8 327 -266 436 254 18 0 chr1 239203036 239203150 -42990514 - L1M4 LINE L1 -3733 2413 2298 1141 188 106 8 chr1 239203150 239203395 -42990269 - MLT1E LTR MaLR 0 593 325 658 167 50 8 chr1 239203451 239203571 -42990093 + MLT1E LTR MaLR 469 593 0 861 268 78 7 chr1 239203571 239203855 -42989809 + L1MCc LINE L1 3093 3396 -3545 * 2277 238 52 22 chr1 239203852 239204666 -42988998 + L1MEc LINE L1 1598 2435 -3961 192 188 0 0 chr1 239204681 239204713 -42988951 + MIR SINE MIR 229 260 -2 348 228 94 60 chr1 239205093 239205242 -42988422 + MIR SINE MIR 52 205 -57 204 125 0 0 chr1 239205720 239205752 -42987912 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 2586 113 8 3 chr1 239205759 239206112 -42987552 + THE1A LTR MaLR 1 355 0 12423 91 12 4 chr1 239206113 239207676 -42985988 + THE1A-int LTR MaLR 5 1580 0 2207 127 56 9 chr1 239207676 239208015 -42985649 + THE1A LTR MaLR 1 355 0 1661 162 29 16 chr1 239208231 239208566 -42985098 + MER41B LTR ERV1 234 543 -11 643 210 0 74 chr1 239209487 239209532 -42984132 - MER5A DNA MER1_type -25 164 117 899 265 45 0 chr1 239209532 239209732 -42983932 + MER63A DNA MER1_type 2 210 0 643 210 0 74 chr1 239209732 239209842 -42983822 - MER5A DNA MER1_type -72 117 12 413 296 157 33 chr1 239210275 239210549 -42983115 - L2 LINE L2 0 3313 3006 519 250 36 62 chr1 239211100 239211292 -42982372 + MIR SINE MIR 20 206 -56 1208 208 48 13 chr1 239211632 239211863 -42981801 - MER8 DNA MER2_type 0 239 1 267 294 23 11 chr1 239211880 239211972 -42981692 + MER5A DNA MER1_type 21 102 -76 416 268 14 51 chr1 239212039 239212177 -42981487 + MIR SINE MIR 118 250 -12 308 282 26 0 chr1 239212225 239212303 -42981361 - MIR SINE MIR -72 136 57 2899 207 19 12 chr1 239213442 239214013 -42979651 - MER119 DNA MER1_type 0 583 9 254 315 174 24 chr1 239214501 239214714 -42978950 - MIR SINE MIR -16 246 2 519 171 0 23 chr1 239214735 239214823 -42978841 + FRAM SINE Alu 63 148 -28 290 67 22 0 chr1 239214823 239214868 -42978796 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 186 43 0 0 chr1 239215597 239215620 -42978044 + (TCC)n Simple_repeat Simple_repeat 3 25 0 1895 212 80 10 chr1 239215629 239216114 -42977550 - L1ME1 LINE L1 -30 6136 5618 * 4597 111 54 113 chr1 239216113 239217079 -42976585 - L1MA5A LINE L1 -1 6296 5388 1442 186 109 34 chr1 239217074 239217635 -42976029 - L1ME1 LINE L1 -570 5596 4987 * 2179 119 0 10 chr1 239218376 239218687 -42974977 + AluSx SINE Alu 1 308 -4 225 326 34 0 chr1 239218863 239218952 -42974712 + MIR SINE MIR 44 135 -73 207 253 46 23 chr1 239219071 239219158 -42974506 - L3b LINE CR1 -152 1431 1343 212 370 0 0 chr1 239220675 239220748 -42972916 - MIR SINE MIR -170 92 20 271 180 40 0 chr1 239220904 239220954 -42972710 - MIR SINE MIR -133 129 78 255 268 73 49 chr1 239221949 239222031 -42971633 - L2 LINE L2 -19 3294 3211 2466 196 54 38 chr1 239223319 239223483 -42970181 + MER97b DNA MER1_type? 221 381 -672 1965 154 3 0 chr1 239223483 239223781 -42969883 - AluSx SINE Alu -13 299 1 2466 196 54 38 chr1 239223781 239224168 -42969496 + MER97b DNA MER1_type? 381 781 -272 22 0 0 0 chr1 239224173 239224195 -42969469 + AT_rich Low_complexity Low_complexity 1 22 0 464 225 0 0 chr1 239224526 239224615 -42969049 + MER97a DNA MER1_type? 795 883 -11 374 274 102 0 chr1 239224628 239224802 -42968862 - L1ME LINE L1 -729 5437 5248 2357 273 39 29 chr1 239225077 239225840 -42967824 + L1ME1 LINE L1 225 995 -5592 192 77 0 0 chr1 239225842 239225868 -42967796 + (A)n Simple_repeat Simple_repeat 1 26 0 13496 189 53 39 chr1 239225876 239230207 -42963457 + L1PA16 LINE L1 2 4367 -2482 222 37 0 0 chr1 239230207 239230234 -42963430 + (TAA)n Simple_repeat Simple_repeat 1 27 0 13496 189 53 39 chr1 239230234 239231603 -42962061 + L1PA16 LINE L1 4367 5715 -1134 4111 132 4 73 chr1 239231603 239232325 -42961339 + L1PA16 LINE L1 6177 6860 -9 436 268 25 6 chr1 239232342 239232499 -42961165 + L1ME1 LINE L1 1002 1161 -5426 454 234 16 24 chr1 239232501 239232625 -42961039 + L1PB4 LINE L1 6034 6156 0 * 1637 254 73 39 chr1 239232614 239233498 -42960166 + L1ME1 LINE L1 1118 2062 -4525 751 196 103 27 chr1 239233568 239233792 -42959872 + L1ME1 LINE L1 5294 5534 -872 2044 200 39 146 chr1 239233794 239234439 -42959225 + MER70B LTR ERVL 3 578 0 763 138 197 11 chr1 239234443 239234539 -42959125 + L1ME1 LINE L1 5533 5610 -2435 282 56 0 0 chr1 239234539 239234575 -42959089 + (CA)n Simple_repeat Simple_repeat 2 37 0 763 138 197 11 chr1 239234575 239234666 -42958998 + L1ME1 LINE L1 5610 5755 -2290 4457 119 113 129 chr1 239234667 239236093 -42957571 + pTR5 LTR ERV1 742 2436 -2 2167 260 41 18 chr1 239236093 239236754 -42956910 + L1ME1 LINE L1 5746 6421 -5 1199 150 41 0 chr1 239236778 239236998 -42956666 + L1MA7 LINE L1 6061 6289 -2 289 234 96 21 chr1 239237021 239237223 -42956441 - L1M4 LINE L1 -3819 2563 2345 21 0 0 0 chr1 239237852 239237873 -42955791 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 239238266 239238288 -42955376 + AT_rich Low_complexity Low_complexity 1 22 0 376 255 38 108 chr1 239239535 239239747 -42953917 + L2 LINE L2 3044 3240 -32 188 213 66 16 chr1 239240503 239240564 -42953100 + MIR SINE MIR 43 106 -102 423 0 0 0 chr1 239240936 239240983 -42952681 + (CA)n Simple_repeat Simple_repeat 1 47 0 489 300 54 6 chr1 239242358 239242550 -42951114 + MIR SINE MIR 40 239 -23 187 228 123 0 chr1 239242662 239242719 -42950945 + MIR3 SINE MIR 108 171 -37 216 377 97 7 chr1 239244183 239244337 -42949327 - MER5A DNA MER1_type -15 174 7 525 250 97 34 chr1 239245499 239245741 -42947923 + L1MC4a LINE L1 5707 5966 -155 30 0 0 0 chr1 239245864 239245894 -42947770 + AT_rich Low_complexity Low_complexity 1 30 0 278 239 14 14 chr1 239246413 239246484 -42947180 + MIR SINE MIR 28 98 -164 188 319 43 14 chr1 239246471 239246540 -42947124 + L3 LINE CR1 1501 1571 -6 * 373 332 80 9 chr1 239247384 239247610 -42946054 + L2 LINE L2 2451 2692 -622 213 39 0 0 chr1 239247693 239247719 -42945945 + (CA)n Simple_repeat Simple_repeat 1 26 0 304 327 91 64 chr1 239247857 239248218 -42945446 + L2 LINE L2 2900 3270 -2 306 310 53 0 chr1 239248896 239249009 -42944655 + MIR SINE MIR 78 196 -66 616 152 0 0 chr1 239249713 239249805 -42943859 - AluJb SINE Alu -10 302 211 232 354 31 39 chr1 239250018 239250148 -42943516 + MER5A DNA MER1_type 56 184 -5 * 269 327 65 50 chr1 239250147 239250416 -42943248 + L2 LINE L2 2756 3035 -237 616 265 109 36 chr1 239250951 239251137 -42942527 - L1ME4a LINE L1 -3 6118 5900 2276 110 3 0 chr1 239251137 239251436 -42942228 - AluSx SINE Alu -12 300 1 616 265 109 36 chr1 239251436 239251551 -42942113 - L1ME4a LINE L1 -221 5900 5795 411 240 29 37 chr1 239251791 239251972 -42941692 - L1ME4a LINE L1 -353 5768 5599 341 293 43 12 chr1 239252211 239252424 -42941240 + MIR SINE MIR 2 262 0 670 221 38 32 chr1 239254059 239254217 -42939447 - MER5B DNA MER1_type -18 160 2 398 246 139 9 chr1 239254323 239254512 -42939152 + MIR SINE MIR 7 214 -48 247 259 0 0 chr1 239254689 239254743 -42938921 - MIR SINE MIR -14 248 195 489 291 53 25 chr1 239254929 239255150 -42938514 + MIR SINE MIR 24 248 -14 499 308 32 28 chr1 239256589 239256839 -42936825 - MER102b DNA MER1_type 0 341 91 399 341 37 7 chr1 239257053 239257188 -42936476 + MER91C DNA MER1_type 2 140 0 438 347 141 4 chr1 239259496 239259744 -42933920 + L2 LINE L2 2981 3262 -10 250 345 0 12 chr1 239261138 239261222 -42932442 - MER5B DNA MER1_type -69 109 27 482 253 167 0 chr1 239261407 239261557 -42932107 - MER5A DNA MER1_type -2 187 13 690 205 16 76 chr1 239261579 239261764 -42931900 + MER5B DNA MER1_type 2 175 -3 245 230 122 27 chr1 239262042 239262116 -42931548 + MLT1K LTR MaLR 470 550 -38 227 384 20 7 chr1 239262318 239262469 -42931195 + MIR SINE MIR 50 202 -60 279 274 226 0 chr1 239263140 239263242 -42930422 + L2 LINE L2 3188 3312 -1 591 314 71 13 chr1 239264036 239264275 -42929389 - MIR SINE MIR -6 256 4 192 77 0 0 chr1 239264587 239264613 -42929051 + (A)n Simple_repeat Simple_repeat 1 26 0 381 351 54 5 chr1 239265183 239265388 -42928276 - MIR SINE MIR 0 262 48 2195 158 93 5 chr1 239265711 239265735 -42927929 + L1MB3 LINE L1 5456 5476 -707 369 0 0 0 chr1 239265735 239265776 -42927888 + (CA)n Simple_repeat Simple_repeat 2 42 0 2195 158 93 5 chr1 239265776 239266161 -42927503 + L1MB3 LINE L1 5476 5901 -282 5007 74 48 9 chr1 239266161 239266826 -42926838 + L1PA10 LINE L1 5476 6166 -2 1683 167 28 3 chr1 239266826 239267103 -42926561 + L1MB3 LINE L1 5887 6181 -2 223 326 22 11 chr1 239267460 239267552 -42926112 + L3b LINE CR1 1359 1451 -132 2565 74 6 0 chr1 239268079 239268390 -42925274 - AluSq SINE Alu 0 313 1 261 317 33 17 chr1 239269677 239269797 -42923867 + MARNA DNA Mariner 380 501 -85 363 295 129 46 chr1 239270051 239270278 -42923386 + LTR40a LTR ERVL 135 452 -67 270 0 0 0 chr1 239270278 239270308 -42923356 + (TG)n Simple_repeat Simple_repeat 2 31 0 363 295 129 46 chr1 239270308 239270382 -42923282 + LTR40a LTR ERVL 452 518 -1 831 284 78 112 chr1 239270791 239271756 -42921908 + L3 LINE CR1 637 1568 -9 948 286 8 8 chr1 239272147 239272388 -42921276 - MIR SINE MIR -21 241 1 326 252 95 83 chr1 239273865 239274053 -42919611 - MIR SINE MIR -22 240 39 238 346 134 14 chr1 239274488 239274705 -42918959 - L3b LINE CR1 -53 1530 1288 246 325 103 77 chr1 239275624 239276042 -42917622 + L2 LINE L2 2819 3247 -25 189 0 0 0 chr1 239276205 239276226 -42917438 + (TAA)n Simple_repeat Simple_repeat 2 22 0 231 296 0 0 chr1 239276652 239276723 -42916941 + A-rich Low_complexity Low_complexity 1 71 0 472 274 57 0 chr1 239277388 239277563 -42916101 + L1PB3 LINE L1 6 190 -6673 1802 198 110 22 chr1 239277588 239278042 -42915622 + L1PB3 LINE L1 670 1163 -5700 16040 196 15 13 chr1 239278062 239278306 -42915358 + L1PB3 LINE L1 1350 1592 -5278 2028 190 96 31 chr1 239278306 239278764 -42914900 + LTR2B LTR ERV1 1 488 -2 16040 196 15 13 chr1 239278764 239283995 -42909669 + L1PB3 LINE L1 1592 6870 0 630 143 66 8 chr1 239284007 239284157 -42909507 + MER41-int LTR ERV1 3243 3855 -1473 212 303 15 15 chr1 239284168 239284234 -42909430 - L3 LINE CR1 -3 1574 1509 * 1274 281 83 52 chr1 239284227 239284803 -42908861 + L2 LINE L2 2019 2612 -702 334 254 49 28 chr1 239285482 239285624 -42908040 - MIR SINE MIR -40 222 78 209 341 49 0 chr1 239286496 239286578 -42907086 + MIR SINE MIR 46 131 -77 479 252 9 0 chr1 239287392 239287507 -42906157 + L2 LINE L2 3198 3313 0 381 358 21 16 chr1 239287538 239287725 -42905939 - L3 LINE CR1 -17 1560 1373 183 278 46 65 chr1 239288158 239288266 -42905398 - L3 LINE CR1 -341 1236 1131 231 114 0 0 chr1 239289744 239289779 -42903885 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 361 292 23 15 chr1 239291428 239291558 -42902106 + MER94 DNA DNA 1 131 -3 382 221 57 82 chr1 239291759 239291881 -42901783 + MIR SINE MIR 7 125 -137 253 266 94 15 chr1 239292087 239292209 -42901455 - MIR SINE MIR -67 141 19 733 233 41 12 chr1 239292390 239292562 -42901102 + MIR SINE MIR 78 254 -8 2282 108 54 38 chr1 239292896 239293265 -42900399 - THE1C LTR MaLR 0 375 1 534 133 44 44 chr1 239293330 239293443 -42900221 + MIR3 SINE MIR 96 208 0 387 319 60 16 chr1 239294380 239294565 -42899099 + MIR SINE MIR 2 194 -68 1704 206 79 57 chr1 239295807 239296086 -42897578 - MLT1C LTR MaLR 0 467 173 2129 137 0 0 chr1 239296086 239296379 -42897285 - AluSg1 SINE Alu -16 293 1 1704 206 79 57 chr1 239296379 239296556 -42897108 - MLT1C LTR MaLR -294 173 1 684 285 80 50 chr1 239296572 239296747 -42896917 - L1MC4a LINE L1 -302 5819 5651 1432 165 7 183 chr1 239296747 239297190 -42896474 + MLT1A1 LTR MaLR 1 365 0 684 285 80 50 chr1 239297190 239297515 -42896149 - L1MC4a LINE L1 -470 5651 5304 238 273 0 0 chr1 239297516 239297571 -42896093 - L2 LINE L2 -4 3268 3214 27 62 0 0 chr1 239297702 239297750 -42895914 + AT_rich Low_complexity Low_complexity 1 48 0 304 323 79 24 chr1 239298015 239298179 -42895485 - LTR16C LTR ERVL 0 491 319 778 204 23 95 chr1 239298503 239298724 -42894940 + MER3 DNA MER1_type 1 205 -4 508 366 40 5 chr1 239298837 239299039 -42894625 - MIR SINE MIR -48 214 6 239 267 228 0 chr1 239299062 239299163 -42894501 - L1MC4a LINE L1 -1299 4847 4724 276 349 84 0 chr1 239299340 239299506 -42894158 - MLT1L LTR MaLR -108 507 328 281 324 9 19 chr1 239299859 239299967 -42893697 - MIR3 SINE MIR -1 207 101 2075 109 7 0 chr1 239300092 239300368 -42893296 - AluSx SINE Alu -11 301 24 258 264 98 83 chr1 239300563 239300645 -42893019 - L1ME4a LINE L1 -4 6117 6038 1610 191 0 32 chr1 239300645 239300954 -42892710 + AluJb SINE Alu 1 299 -13 2022 117 16 10 chr1 239300957 239301265 -42892399 + AluY SINE Alu 1 310 -1 258 264 98 83 chr1 239301265 239301575 -42892089 - L1ME4a LINE L1 -84 6037 5715 374 324 7 7 chr1 239301592 239301731 -42891933 - L1ME4a LINE L1 -476 5645 5507 24 0 0 0 chr1 239302466 239302490 -42891174 + AT_rich Low_complexity Low_complexity 1 24 0 396 0 0 0 chr1 239302868 239302912 -42890752 + (TG)n Simple_repeat Simple_repeat 1 44 0 303 71 0 0 chr1 239303041 239303083 -42890581 + (CA)n Simple_repeat Simple_repeat 1 42 0 356 354 67 4 chr1 239303149 239303314 -42890350 - MIR3 SINE MIR -14 194 20 393 345 50 53 chr1 239303388 239303710 -42889954 + L2 LINE L2 2932 3252 -20 260 339 31 31 chr1 239304444 239304574 -42889090 + MER5A DNA MER1_type 60 189 0 30 27 0 0 chr1 239304598 239304635 -42889029 + AT_rich Low_complexity Low_complexity 1 37 0 353 333 58 7 chr1 239305811 239305949 -42887715 - MIR3 SINE MIR -54 154 10 280 314 0 23 chr1 239306915 239307001 -42886663 + MIR SINE MIR 81 164 -98 308 270 88 51 chr1 239307720 239307857 -42885807 + MIR SINE MIR 63 204 -58 355 305 144 0 chr1 239307955 239308073 -42885591 - L2 LINE L2 -2 3270 3136 318 26 0 0 chr1 239308503 239308542 -42885122 + (TG)n Simple_repeat Simple_repeat 1 39 0 307 219 73 12 chr1 239308969 239309051 -42884613 + MIR3 SINE MIR 110 196 -12 955 176 101 10 chr1 239309457 239309656 -42884008 - MER20 DNA MER1_type -2 217 1 243 0 0 0 chr1 239309916 239309943 -42883721 + (CCA)n Simple_repeat Simple_repeat 3 29 0 412 290 31 57 chr1 239310049 239310242 -42883422 + MIR SINE MIR 29 216 -46 21 0 0 0 chr1 239310924 239310945 -42882719 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 239311097 239311118 -42882546 + AT_rich Low_complexity Low_complexity 1 21 0 784 211 0 0 chr1 239312096 239312224 -42881440 + FLAM_C SINE Alu 1 128 -5 395 265 36 110 chr1 239312283 239312502 -42881162 - MIR SINE MIR -43 219 17 642 212 20 7 chr1 239313837 239313988 -42879676 - L1MA10 LINE L1 -8 6326 6174 2100 204 199 18 chr1 239314000 239314617 -42879047 - L1ME1 LINE L1 -168 5998 5270 * 4501 198 40 30 chr1 239314598 239314753 -42878911 - L1MB8 LINE L1 -3 6331 6179 324 0 0 0 chr1 239314753 239314789 -42878875 + (TG)n Simple_repeat Simple_repeat 2 37 0 4501 198 40 30 chr1 239314789 239316859 -42876805 - L1MB8 LINE L1 -155 6179 4231 1064 169 18 41 chr1 239316862 239317081 -42876583 + MER20 DNA MER1_type 1 214 -5 4662 226 59 64 chr1 239317086 239317732 -42875932 - L1MB8 LINE L1 -1910 4236 3588 2225 120 0 0 chr1 239317732 239318033 -42875631 - AluSg SINE Alu -9 301 1 4662 226 59 64 chr1 239318033 239319052 -42874612 - L1MB8 LINE L1 -2558 3588 2579 4054 247 68 25 chr1 239319062 239320315 -42873349 - L1MEc LINE L1 -5055 1341 35 262 317 8 50 chr1 239320327 239320447 -42873217 - MIR SINE MIR -71 191 77 1822 119 9 108 chr1 239321661 239321996 -42871668 + AluSg SINE Alu 1 302 -8 278 283 40 20 chr1 239322045 239322144 -42871520 + L2 LINE L2 2970 3070 -243 514 267 72 48 chr1 239322172 239322361 -42871303 + MIR SINE MIR 4 202 -60 430 145 26 0 chr1 239322361 239322437 -42871227 - MER116 DNA Mariner 0 80 3 514 267 72 48 chr1 239322437 239322498 -42871166 + MIR SINE MIR 202 260 -2 809 227 12 31 chr1 239322519 239322682 -42870982 - FRAM SINE Alu -17 159 1 352 296 37 30 chr1 239322689 239322824 -42870840 + L2 LINE L2 3163 3298 -15 31 88 0 0 chr1 239322826 239322906 -42870758 + AT_rich Low_complexity Low_complexity 1 80 0 2414 75 0 3 chr1 239324071 239324376 -42869288 - AluY SINE Alu -7 304 1 227 340 148 45 chr1 239324383 239324760 -42868904 + L2 LINE L2 2840 3255 -17 303 93 0 0 chr1 239324765 239324808 -42868856 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 1736 170 3 11 chr1 239325158 239325473 -42868191 - AluJb SINE Alu 0 315 3 752 218 0 0 chr1 239325813 239325946 -42867718 - MER94 DNA DNA -1 133 1 237 211 0 0 chr1 239326171 239326223 -42867441 + (CA)n Simple_repeat Simple_repeat 1 52 0 180 296 0 37 chr1 239326815 239326869 -42866795 + L2 LINE L2 3031 3082 -190 203 271 133 24 chr1 239327547 239327698 -42865966 + MIR3 SINE MIR 34 207 -1 611 255 123 66 chr1 239327872 239328221 -42865443 + MLT1I LTR MaLR 41 409 0 595 282 76 40 chr1 239329837 239330095 -42863569 + MIR SINE MIR 3 261 -1 727 239 23 6 chr1 239332204 239332380 -42861284 - MIR SINE MIR -21 241 63 552 289 114 39 chr1 239332380 239332671 -42860993 + L1ME LINE L1 5475 5793 -371 1279 237 140 33 chr1 239332900 239333440 -42860224 + MLT1E3 LTR MaLR 14 624 0 2324 97 0 7 chr1 239333635 239333934 -42859730 + AluSq SINE Alu 1 297 -16 1807 91 11 40 chr1 239333939 239334048 -42859616 + L1MA2 LINE L1 6037 6148 -156 1632 176 7 4 chr1 239334048 239334327 -42859337 + AluJb SINE Alu 1 280 -32 185 0 0 39 chr1 239334327 239334353 -42859311 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1807 91 11 40 chr1 239334353 239334518 -42859146 + L1MA2 LINE L1 6146 6304 0 441 353 42 81 chr1 239335683 239336066 -42857598 + L2 LINE L2 2861 3228 -44 238 308 0 0 chr1 239336087 239336152 -42857512 + GA-rich Low_complexity Low_complexity 3 67 0 2026 234 6 53 chr1 239337054 239337076 -42856588 - MLT2B1 LTR ERVL 0 520 499 2103 162 113 10 chr1 239337076 239337464 -42856200 + MSTA LTR MaLR 1 428 0 2026 234 6 53 chr1 239337464 239337987 -42855677 - MLT2B1 LTR ERVL -21 499 1 327 357 32 0 chr1 239338327 239338484 -42855180 + L2 LINE L2 2871 3032 -240 1222 208 14 0 chr1 239340177 239340398 -42853266 - MER58A DNA MER1_type 0 224 1 1172 269 68 45 chr1 239340554 239340886 -42852778 + L2 LINE L2 2686 3049 -264 2416 95 3 0 chr1 239340886 239341190 -42852474 - AluSp SINE Alu -8 305 1 1172 269 68 45 chr1 239341190 239341462 -42852202 + L2 LINE L2 3049 3313 0 869 258 84 70 chr1 239342486 239342916 -42850748 + MLT1J2 LTR MaLR 1 436 -14 836 172 0 8 chr1 239342924 239343058 -42850606 - AluJo SINE Alu -178 134 2 2547 168 59 64 chr1 239343515 239344076 -42849588 - MER21B LTR ERV1 -12 851 294 214 162 0 0 chr1 239344314 239344351 -42849313 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 226 258 16 16 chr1 239344601 239344663 -42849001 + L3 LINE CR1 1441 1502 -75 200 111 28 0 chr1 239345521 239345557 -42848107 + (CA)n Simple_repeat Simple_repeat 2 38 0 688 266 122 21 chr1 239346479 239346716 -42846948 + MIR SINE MIR 2 262 0 2198 117 0 0 chr1 239346807 239347098 -42846566 + AluSg SINE Alu 1 291 -19 1112 232 134 26 chr1 239348050 239348468 -42845196 - MLT1C LTR MaLR 0 467 5 493 272 5 43 chr1 239349838 239350022 -42843642 + MER58C DNA MER1_type 39 215 0 300 308 176 19 chr1 239350077 239350236 -42843428 + MIR SINE MIR 1 184 -78 1700 169 4 4 chr1 239350251 239350555 -42843109 - AluJb SINE Alu 0 308 5 243 262 23 0 chr1 239350757 239350841 -42842823 - MIR SINE MIR -66 142 84 252 327 99 0 chr1 239350914 239351015 -42842649 - L2 LINE L2 0 3272 3162 367 361 116 48 chr1 239351140 239351446 -42842218 - L2 LINE L2 -353 2961 2677 2510 116 30 28 chr1 239351446 239351809 -42841855 + THE1B LTR MaLR 1 364 0 367 361 116 48 chr1 239351809 239352670 -42840994 - L2 LINE L2 -637 2677 1715 1019 200 0 0 chr1 239352869 239353029 -42840635 + FAM SINE Alu 1 160 -15 189 0 0 0 chr1 239353105 239353126 -42840538 + (TAA)n Simple_repeat Simple_repeat 1 21 0 575 270 20 0 chr1 239353187 239353335 -42840329 - MIR SINE MIR -56 206 56 636 309 82 5 chr1 239353939 239354146 -42839518 + MIR SINE MIR 27 249 -13 239 310 217 15 chr1 239354674 239354877 -42838787 + MIR SINE MIR 13 256 -6 695 274 20 25 chr1 239355298 239355499 -42838165 + MIR SINE MIR 47 246 -16 500 232 29 22 chr1 239357026 239357164 -42836500 + L1ME3A LINE L1 6027 6165 -5 644 149 0 0 chr1 239357532 239357626 -42836038 + FRAM SINE Alu 69 162 -14 446 241 71 30 chr1 239357626 239357762 -42835902 + MIR SINE MIR 55 193 -69 734 268 107 10 chr1 239358035 239358240 -42835424 - MIR SINE MIR -21 241 17 31 26 0 0 chr1 239358262 239358300 -42835364 + AT_rich Low_complexity Low_complexity 1 38 0 2884 221 85 39 chr1 239358388 239358702 -42834962 - L1ME1 LINE L1 -4 6162 5864 2208 116 0 3 chr1 239358702 239359004 -42834660 + AluSx SINE Alu 1 301 -11 2884 221 85 39 chr1 239359004 239359104 -42834560 - L1ME1 LINE L1 -302 5864 5770 2503 122 13 19 chr1 239359104 239359481 -42834183 - THE1C LTR MaLR 0 375 1 2884 221 85 39 chr1 239359481 239359880 -42833784 - L1ME1 LINE L1 -396 5770 5291 4190 89 2 9 chr1 239359880 239360429 -42833235 - L1PA11 LINE L1 -2 6172 5628 2884 221 85 39 chr1 239360429 239360524 -42833140 - L1ME1 LINE L1 -875 5291 5202 315 381 68 15 chr1 239360680 239360945 -42832719 - L2 LINE L2 -459 2855 2577 212 369 89 6 chr1 239361333 239361490 -42832174 - L2 LINE L2 -1195 2119 1950 703 76 45 8 chr1 239361871 239362003 -42831661 + (TAGA)n Simple_repeat Simple_repeat 3 139 0 446 284 16 8 chr1 239362021 239362148 -42831516 + L2 LINE L2 3186 3313 0 1500 238 54 58 chr1 239362758 239362953 -42830711 - MLT1H LTR MaLR 0 549 355 1984 172 27 55 chr1 239362953 239363354 -42830310 - MLT1B LTR MaLR 0 390 1 1500 238 54 58 chr1 239363354 239363603 -42830061 - MLT1H LTR MaLR -194 355 107 2507 72 0 0 chr1 239363959 239364265 -42829399 + AluY SINE Alu 1 306 -5 488 285 21 65 chr1 239364499 239364685 -42828979 + MIR3 SINE MIR 25 202 -6 189 0 0 0 chr1 239366018 239366039 -42827625 + (A)n Simple_repeat Simple_repeat 1 21 0 474 233 0 0 chr1 239366218 239366308 -42827356 + MLT1E1 LTR MaLR 5 94 -560 269 200 0 20 chr1 239366297 239366347 -42827317 + MLT1E1 LTR MaLR 221 269 -385 * 1148 79 110 0 chr1 239366347 239366511 -42827153 + MER30 DNA MER1_type 1 182 -48 * 1223 119 97 0 chr1 239366495 239366680 -42826984 + MER30 DNA MER1_type 28 230 0 1489 208 20 96 chr1 239366685 239367093 -42826571 + MLT1E1 LTR MaLR 278 654 0 288 0 0 0 chr1 239367582 239367614 -42826050 + (CA)n Simple_repeat Simple_repeat 2 33 0 280 314 110 8 chr1 239367981 239368099 -42825565 + L2 LINE L2 3142 3271 -1 221 75 25 0 chr1 239369332 239369372 -42824292 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 3075 63 0 0 chr1 239369373 239369738 -42823926 - L1PA5 LINE L1 -3 6151 5787 966 262 30 33 chr1 239370479 239370704 -42822960 + MLT1I LTR MaLR 85 310 -99 2006 181 22 6 chr1 239370704 239371063 -42822601 + MLT1A1 LTR MaLR 1 365 0 966 262 30 33 chr1 239371063 239371139 -42822525 + MLT1I LTR MaLR 310 385 -24 585 278 69 18 chr1 239371302 239371509 -42822155 - MIR SINE MIR -43 219 2 549 218 109 7 chr1 239371596 239371702 -42821962 + MIR SINE MIR 84 210 -52 7655 120 40 17 chr1 239371702 239371976 -42821688 - Tigger3b DNA MER2_type -1797 1231 965 2486 84 0 0 chr1 239371976 239372284 -42821380 + AluY SINE Alu 1 308 -3 7655 120 40 17 chr1 239372284 239373213 -42820451 - Tigger3b DNA MER2_type -2063 965 1 549 218 109 7 chr1 239373213 239373253 -42820411 + MIR SINE MIR 210 245 -17 475 283 43 7 chr1 239375272 239375410 -42818254 - MIR3 SINE MIR -15 193 51 224 209 0 15 chr1 239375485 239375552 -42818112 + GA-rich Low_complexity Low_complexity 2 67 0 448 158 13 0 chr1 239376323 239376399 -42817265 + L3b LINE CR1 1258 1334 -249 185 159 23 0 chr1 239378575 239378619 -42815045 + GA-rich Low_complexity Low_complexity 4 48 0 246 62 0 0 chr1 239380304 239380336 -42813328 + (CA)n Simple_repeat Simple_repeat 1 32 0 1950 169 64 48 chr1 239381005 239381209 -42812455 + MSTC LTR MaLR 2 201 -227 2116 121 0 38 chr1 239381209 239381522 -42812142 + AluSg SINE Alu 1 301 -9 1950 169 64 48 chr1 239381522 239381737 -42811927 + MSTC LTR MaLR 201 428 0 788 281 83 16 chr1 239383041 239383283 -42810381 - MIR SINE MIR 0 262 5 242 254 15 15 chr1 239383821 239383888 -42809776 + L2 LINE L2 3206 3272 0 1154 113 16 16 chr1 239384147 239384332 -42809332 - MER53 DNA DNA 0 189 5 1848 165 3 13 chr1 239386318 239386621 -42807043 + AluJo SINE Alu 1 300 -12 263 302 56 16 chr1 239388837 239388963 -42804701 + MIR SINE MIR 53 183 -79 244 227 0 15 chr1 239389027 239389093 -42804571 - MIR3 SINE MIR -3 205 141 251 303 61 38 chr1 239389228 239389360 -42804304 + MIR3 SINE MIR 11 145 -63 457 288 99 24 chr1 239389392 239389604 -42804060 + MIR SINE MIR 29 256 -6 394 269 88 6 chr1 239389977 239390137 -42803527 - MIR SINE MIR -45 217 45 481 270 61 12 chr1 239391454 239391617 -42802047 + MIR SINE MIR 49 219 -43 334 377 0 8 chr1 239392247 239392377 -42801287 + MER5A DNA MER1_type 55 183 -6 432 55 0 0 chr1 239393786 239393841 -42799823 + (TA)n Simple_repeat Simple_repeat 1 55 0 216 214 0 0 chr1 239393841 239393897 -42799767 + (CA)n Simple_repeat Simple_repeat 1 56 0 385 235 12 12 chr1 239393998 239394083 -42799581 - MLT1I LTR MaLR 0 409 325 244 245 19 0 chr1 239394201 239394254 -42799410 - MLT1I LTR MaLR -125 284 231 222 192 0 0 chr1 239394593 239394645 -42799019 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 209 128 26 0 chr1 239394860 239394899 -42798765 + (TA)n Simple_repeat Simple_repeat 2 41 0 405 58 0 0 chr1 239394925 239394977 -42798687 + (TG)n Simple_repeat Simple_repeat 1 52 0 261 0 0 0 chr1 239395122 239395151 -42798513 + (CAA)n Simple_repeat Simple_repeat 2 30 0 287 150 17 0 chr1 239395199 239395259 -42798405 + GA-rich Low_complexity Low_complexity 4 64 0 367 332 122 25 chr1 239395697 239395935 -42797729 - L2 LINE L2 -451 2863 2603 2314 100 3 3 chr1 239398740 239399040 -42794624 + AluSq SINE Alu 1 300 -13 22 56 0 0 chr1 239399256 239399292 -42794372 + AT_rich Low_complexity Low_complexity 1 36 0 214 217 33 33 chr1 239400728 239400788 -42792876 - L2 LINE L2 -13 3259 3200 478 300 87 17 chr1 239400935 239401165 -42792499 + MIR SINE MIR 11 256 -6 251 290 0 0 chr1 239401548 239401610 -42792054 - L2 LINE L2 -15 3298 3237 805 250 38 28 chr1 239401628 239401840 -42791824 + MLT1J2 LTR MaLR 21 234 -216 354 181 56 14 chr1 239401902 239401974 -42791690 + MLT1J2 LTR MaLR 345 419 -31 241 336 35 79 chr1 239402016 239402225 -42791439 - L2 LINE L2 -67 3205 3005 1854 204 46 0 chr1 239402225 239402598 -42791066 - MLT1B LTR MaLR 0 390 1 241 336 35 79 chr1 239402598 239402617 -42791047 - L2 LINE L2 -267 3005 2987 257 91 0 0 chr1 239402648 239402681 -42790983 - MLT1B LTR MaLR -357 33 1 478 254 14 7 chr1 239403921 239404059 -42789605 + L2 LINE L2 2566 2704 -610 570 334 59 29 chr1 239404207 239404581 -42789083 + L2 LINE L2 2929 3313 0 498 174 196 22 chr1 239404784 239404922 -42788742 - MER5A DNA MER1_type -2 187 26 237 261 45 10 chr1 239405087 239405191 -42788473 - MIR SINE MIR -52 156 45 295 248 20 10 chr1 239406351 239406452 -42787212 + MER5A DNA MER1_type 9 110 -79 340 290 53 15 chr1 239407350 239407481 -42786183 + MIR SINE MIR 37 172 -90 1352 298 55 88 chr1 239408414 239408954 -42784710 - L3 LINE CR1 -10 1567 1011 183 80 0 0 chr1 239408954 239408979 -42784685 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 1352 298 55 88 chr1 239408979 239409032 -42784632 - L3 LINE CR1 -566 1011 958 408 36 0 18 chr1 239409032 239409087 -42784577 - MADE1 DNA Mariner -26 54 1 1352 298 55 88 chr1 239409087 239409523 -42784141 - L3 LINE CR1 -619 958 518 2023 100 10 45 chr1 239409678 239409968 -42783696 + AluSg SINE Alu 1 280 -30 381 348 71 18 chr1 239409999 239410223 -42783441 - L3 LINE CR1 -1190 387 152 297 0 0 0 chr1 239410671 239410704 -42782960 + (CA)n Simple_repeat Simple_repeat 1 33 0 264 359 109 0 chr1 239412032 239412160 -42781504 + MIR SINE MIR 110 251 -11 2130 120 0 13 chr1 239412167 239412468 -42781196 - AluSg SINE Alu -13 297 1 230 250 27 54 chr1 239412563 239412675 -42780989 + LTR16C LTR ERVL 325 433 -58 2347 87 3 7 chr1 239414125 239414435 -42779229 - AluSg1 SINE Alu 0 309 1 1837 104 4 12 chr1 239415637 239415896 -42777768 + THE1C-int LTR MaLR 1324 1580 0 1869 127 68 25 chr1 239415896 239416251 -42777413 + THE1C LTR MaLR 1 370 -5 2304 79 48 0 chr1 239417229 239417519 -42776145 + AluSx SINE Alu 1 304 -8 2205 252 62 30 chr1 239417521 239418262 -42775402 + L1ME3 LINE L1 5392 6156 -6 1995 97 0 34 chr1 239418629 239418928 -42774736 - AluSq SINE Alu 0 314 25 1904 150 64 22 chr1 239419220 239419232 -42774432 - THE1C LTR MaLR 0 375 365 2251 116 0 0 chr1 239419232 239419534 -42774130 - AluSg SINE Alu -8 302 1 1904 150 64 22 chr1 239419534 239419881 -42773783 - THE1C LTR MaLR -10 365 1 596 207 33 0 chr1 239420308 239420429 -42773235 + FLAM_C SINE Alu 2 126 -7 585 285 71 77 chr1 239420439 239420814 -42772850 + HAL1 LINE L1 1239 1612 -895 2209 125 0 0 chr1 239420814 239421110 -42772554 + AluSx SINE Alu 6 301 -11 585 285 71 77 chr1 239421110 239421268 -42772396 + HAL1 LINE L1 1612 1769 -738 347 298 36 12 chr1 239421610 239421778 -42771886 - L2 LINE L2 -191 3081 2910 2316 107 3 0 chr1 239421779 239422087 -42771577 + AluSx SINE Alu 1 309 -3 1290 159 72 59 chr1 239422283 239422603 -42771061 + MER33 DNA MER1_type 1 324 0 494 217 0 0 chr1 239422623 239422715 -42770949 + MIR SINE MIR 1 92 -170 2483 83 0 3 chr1 239422716 239423018 -42770646 + AluSc SINE Alu 1 301 -8 1316 164 31 23 chr1 239423056 239423312 -42770352 - MLT1B LTR MaLR 0 390 133 2128 118 3 16 chr1 239423320 239423624 -42770040 - AluSx SINE Alu -12 300 1 6061 92 15 53 chr1 239424088 239424102 -42769562 + L1PA16 LINE L1 4693 4706 -1460 1477 156 80 42 chr1 239424102 239424390 -42769274 + AluJo SINE Alu 1 299 -13 6061 92 15 53 chr1 239424390 239425884 -42767780 + L1PA16 LINE L1 4706 6166 0 2272 88 14 0 chr1 239425892 239426188 -42767476 + AluSp SINE Alu 1 300 -13 416 261 122 30 chr1 239426888 239427083 -42766581 - MIR SINE MIR -17 245 40 1838 173 3 19 chr1 239427328 239427641 -42766023 - AluJo SINE Alu -4 308 1 415 265 14 61 chr1 239427688 239427835 -42765829 - MER117 DNA MER1_type -4 193 54 624 71 12 0 chr1 239428480 239428564 -42765100 + AluSg/x SINE Alu 211 295 -15 1163 174 0 19 chr1 239428566 239428778 -42764886 - AluJo SINE Alu -83 229 22 1984 167 0 0 chr1 239429901 239430212 -42763452 - AluJb SINE Alu -1 311 1 229 333 38 0 chr1 239430364 239430469 -42763195 + L2 LINE L2 2942 3050 -222 1873 168 0 3 chr1 239430478 239430775 -42762889 - AluJb SINE Alu -16 296 1 324 293 40 59 chr1 239431555 239431777 -42761887 + L1M4 LINE L1 2701 2918 -3228 2217 125 3 0 chr1 239433183 239433494 -42760170 - AluSx SINE Alu 0 312 1 1001 203 0 48 chr1 239433497 239433724 -42759940 - L1M4 LINE L1 -1741 4405 4190 189 0 0 0 chr1 239433736 239433757 -42759907 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 2141 129 0 0 chr1 239433759 239434045 -42759619 - AluSx SINE Alu -26 286 1 430 91 0 15 chr1 239435008 239435074 -42758590 + AluSp/q SINE Alu 241 305 -8 624 211 0 16 chr1 239435266 239435389 -42758275 - FLAM_A SINE Alu -12 121 1 576 142 142 0 chr1 239435736 239435842 -42757822 - FLAM_C SINE Alu -12 121 1 2232 113 13 0 chr1 239436089 239436390 -42757274 - AluSx SINE Alu -7 305 1 190 111 0 0 chr1 239436498 239436525 -42757139 - L2 LINE L2 -14 3258 3232 200 233 0 0 chr1 239436666 239436709 -42756955 + T-rich Low_complexity Low_complexity 1 43 0 1955 134 23 7 chr1 239437067 239437374 -42756290 + AluSx SINE Alu 1 312 0 2409 103 0 0 chr1 239438043 239438355 -42755309 + AluSx SINE Alu 1 312 0 318 322 91 25 chr1 239439341 239439768 -42753896 + L1M4 LINE L1 3702 4165 -1981 450 162 50 81 chr1 239439911 239440010 -42753654 + MLT1D LTR MaLR 1 96 -409 440 240 109 14 chr1 239440234 239440454 -42753210 - L1ME3A LINE L1 -121 6049 5779 325 228 132 9 chr1 239440424 239440538 -42753126 - L1M4 LINE L1 -3705 2441 2314 * 1209 176 117 41 chr1 239440746 239441036 -42752628 + AluJo SINE Alu 1 312 0 189 224 118 53 chr1 239441702 239441778 -42751886 + L2 LINE L2 3191 3271 -1 1947 179 34 21 chr1 239441782 239442167 -42751497 + MLT1B LTR MaLR 1 390 0 294 143 20 0 chr1 239442360 239442409 -42751255 - Alu SINE Alu -249 50 1 1812 93 4 48 chr1 239442698 239442967 -42750697 + AluSc SINE Alu 1 257 -52 * 2234 101 0 3 chr1 239442966 239443263 -42750401 + AluSc SINE Alu 5 300 -9 2305 84 14 0 chr1 239444098 239444394 -42749270 + AluSx SINE Alu 1 300 -12 885 127 51 19 chr1 239444421 239444579 -42749085 + L1MB3 LINE L1 6021 6183 0 449 195 84 48 chr1 239444601 239444733 -42748931 - L1ME1 LINE L1 -2 6182 6045 469 333 26 21 chr1 239445323 239445557 -42748107 - L2 LINE L2 -1319 1995 1761 579 316 25 28 chr1 239445609 239445894 -42747770 - MARNA DNA Mariner -251 335 52 2249 104 0 0 chr1 239446012 239446309 -42747355 - AluSx SINE Alu -15 297 1 320 223 123 39 chr1 239446403 239446533 -42747131 - MER113 DNA MER1_type? -380 141 1 575 253 20 20 chr1 239446570 239446716 -42746948 + MIR SINE MIR 46 191 -71 1308 142 40 20 chr1 239447592 239447839 -42745825 + AluJo SINE Alu 49 300 -12 1638 159 15 0 chr1 239448110 239448374 -42745290 + AluJb SINE Alu 1 268 -44 281 218 126 0 chr1 239448553 239448640 -42745024 - MLT1L LTR MaLR -17 598 501 271 307 156 34 chr1 239448692 239448871 -42744793 - MLT1J LTR MaLR -196 315 115 1479 165 28 0 chr1 239449449 239449697 -42743967 - L1PB4 LINE L1 -10 6146 5892 436 158 89 0 chr1 239449774 239449875 -42743789 - L1MDa LINE L1 -4800 1740 1631 500 243 48 29 chr1 239449936 239450142 -42743522 - L1PA16 LINE L1 -138 6028 5819 2104 123 0 3 chr1 239450323 239450624 -42743040 - AluY SINE Alu -11 300 1 295 151 0 0 chr1 239450668 239450721 -42742943 - L1MA3 LINE L1 0 6305 6253 848 171 8 0 chr1 239450721 239450850 -42742814 - FRAM SINE Alu -10 166 37 475 319 12 19 chr1 239450857 239451017 -42742647 - MIR3 SINE MIR -30 178 20 2251 118 0 9 chr1 239451256 239451571 -42742093 - AluSx SINE Alu 0 312 1 1153 161 164 62 chr1 239451622 239451853 -42741811 - AluJo SINE Alu 0 302 37 1489 150 0 70 chr1 239451853 239452140 -42741524 + AluJb SINE Alu 34 300 -12 1153 161 164 62 chr1 239452140 239452182 -42741482 - AluJo SINE Alu -265 37 1 1563 178 60 0 chr1 239452228 239452497 -42741167 - LTR24 LTR ERV1 0 467 183 1975 248 91 16 chr1 239453997 239454501 -42739163 + MLT1F LTR MaLR 1 542 0 253 314 154 6 chr1 239454563 239454719 -42738945 + MIR SINE MIR 1 179 -83 451 210 51 7 chr1 239454741 239454879 -42738785 + L1MB4 LINE L1 5964 6107 -73 287 313 84 0 chr1 239455429 239455512 -42738152 + L2 LINE L2 3136 3225 -47 901 264 39 24 chr1 239455733 239455987 -42737677 - MIR SINE MIR -2 260 3 188 286 32 0 chr1 239456084 239456147 -42737517 - L2 LINE L2 -291 2981 2917 504 111 0 0 chr1 239456275 239456372 -42737292 + AluJ/FRAM SINE Alu 221 317 0 1776 134 36 46 chr1 239456426 239456731 -42736933 + AluJo SINE Alu 1 302 -10 534 103 0 0 chr1 239456907 239456985 -42736679 + (GAAA)n Simple_repeat Simple_repeat 1 78 0 210 37 0 0 chr1 239457224 239457251 -42736413 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2020 123 3 32 chr1 239457584 239457892 -42735772 - AluSx SINE Alu -13 299 1 837 286 90 33 chr1 239458043 239458654 -42735010 + HAL1b LINE L1 1 646 -702 272 344 26 7 chr1 239458655 239458809 -42734855 + HAL1b LINE L1 668 824 -524 1518 154 46 46 chr1 239458916 239459228 -42734436 + AluJo SINE Alu 1 312 0 1655 193 0 3 chr1 239459240 239459552 -42734112 + AluJo SINE Alu 1 311 0 231 271 30 23 chr1 239459762 239459895 -42733769 + L1 LINE L1 2309 2442 -3704 2320 85 27 0 chr1 239459954 239460248 -42733416 + AluSx SINE Alu 1 302 -10 822 146 0 29 chr1 239460784 239460921 -42732743 - FRAM SINE Alu -4 172 40 342 0 0 0 chr1 239461859 239461897 -42731767 + (CA)n Simple_repeat Simple_repeat 1 38 0 581 183 0 0 chr1 239462929 239463022 -42730642 + AluSg/x SINE Alu 203 295 -15 35 24 0 0 chr1 239463355 239463397 -42730267 + AT_rich Low_complexity Low_complexity 1 42 0 2125 129 6 3 chr1 239463517 239463828 -42729836 + AluJb SINE Alu 1 312 0 1077 140 18 12 chr1 239464274 239464438 -42729226 - AluJb SINE Alu -16 296 132 237 83 0 0 chr1 239464901 239464937 -42728727 + (CA)n Simple_repeat Simple_repeat 2 37 0 935 124 5 124 chr1 239465542 239465735 -42727929 - FAM SINE Alu -5 170 1 207 261 0 0 chr1 239467878 239467924 -42725740 + L2 LINE L2 3219 3264 -8 22 0 0 0 chr1 239468355 239468377 -42725287 + AT_rich Low_complexity Low_complexity 1 22 0 532 280 64 76 chr1 239468611 239469018 -42724646 + L2 LINE L2 2260 2661 -653 23 0 0 0 chr1 239470184 239470207 -42723457 + AT_rich Low_complexity Low_complexity 1 23 0 396 0 0 0 chr1 239470442 239470486 -42723178 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr1 239470550 239470576 -42723088 + AT_rich Low_complexity Low_complexity 1 26 0 1958 156 3 3 chr1 239470819 239471120 -42722544 + AluSx SINE Alu 1 301 -11 491 254 33 8 chr1 239473811 239473933 -42719731 + L2 LINE L2 2835 2959 -355 1884 165 13 0 chr1 239474103 239474406 -42719258 - AluJb SINE Alu -5 307 1 232 274 36 12 chr1 239474726 239474810 -42718854 + L2 LINE L2 2966 3051 -221 333 331 40 14 chr1 239475262 239475410 -42718254 - MIR SINE MIR -31 231 80 1974 154 3 0 chr1 239475938 239476236 -42717428 + AluJb SINE Alu 14 312 0 283 336 9 19 chr1 239476274 239476381 -42717283 - MIR SINE MIR -141 121 16 363 276 24 17 chr1 239478959 239479094 -42714570 + MER20B DNA MER1_type 77 215 -4 390 152 0 101 chr1 239479830 239479909 -42713755 - Tigger7 DNA MER2_type -6 2485 2415 501 17 0 0 chr1 239479911 239479969 -42713695 + (TA)n Simple_repeat Simple_repeat 1 58 0 737 105 26 9 chr1 239479971 239480085 -42713579 - Tigger7 DNA MER2_type -1965 522 407 534 271 186 9 chr1 239480722 239480943 -42712721 - MIR SINE MIR 0 262 3 3189 145 29 15 chr1 239481045 239481563 -42712101 - Tigger7 DNA MER2_type -1961 526 2 23 54 0 0 chr1 239481649 239481686 -42711978 + AT_rich Low_complexity Low_complexity 1 37 0 399 261 72 0 chr1 239481763 239481874 -42711790 - MIR3 SINE MIR -49 159 41 309 296 82 44 chr1 239482551 239482757 -42710907 - MARNA DNA Mariner -107 479 266 532 284 67 10 chr1 239482789 239482983 -42710681 + MIR SINE MIR 8 212 -50 198 71 0 0 chr1 239483185 239483213 -42710451 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2195 222 79 44 chr1 239484792 239485364 -42708300 - MLT1E LTR MaLR -1 592 1 181 156 0 44 chr1 239485673 239485718 -42707946 - L2 LINE L2 0 3313 3271 496 281 38 32 chr1 239485766 239485951 -42707713 + MER5A DNA MER1_type 1 186 -3 425 290 0 0 chr1 239486013 239486113 -42707551 - MER5A DNA MER1_type -80 109 10 217 269 15 30 chr1 239486894 239486961 -42706703 + MIR3 SINE MIR 3 68 -140 207 247 67 90 chr1 239486961 239487050 -42706614 - L2 LINE L2 0 3272 3186 239 327 27 20 chr1 239487077 239487227 -42706437 - MIR SINE MIR -2 260 110 474 222 19 28 chr1 239487375 239487483 -42706181 - MIR SINE MIR -67 195 89 206 198 12 139 chr1 239487512 239487598 -42706066 + MIR3 SINE MIR 134 208 0 873 271 74 88 chr1 239488022 239488523 -42705141 + L2 LINE L2 2818 3311 -2 421 350 67 5 chr1 239489624 239489871 -42703793 - MIR SINE MIR 0 262 3 227 257 132 97 chr1 239490258 239490402 -42703262 + L2 LINE L2 3122 3270 -2 210 323 161 0 chr1 239491034 239491127 -42702537 - L2 LINE L2 -18 3254 3147 1969 158 0 7 chr1 239491158 239491455 -42702209 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 239493552 239493574 -42700090 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 315 0 0 0 chr1 239493573 239493608 -42700056 + (CA)n Simple_repeat Simple_repeat 1 35 0 396 0 0 0 chr1 239493608 239493652 -42700012 + (GA)n Simple_repeat Simple_repeat 1 44 0 1011 153 39 83 chr1 239494384 239494613 -42699051 - MER20 DNA MER1_type 0 219 1 255 315 141 0 chr1 239494685 239494834 -42698830 + L2 LINE L2 3125 3294 -19 189 253 172 11 chr1 239496405 239496492 -42697172 + L3b LINE CR1 1305 1405 -178 198 0 0 0 chr1 239496814 239496836 -42696828 + (TG)n Simple_repeat Simple_repeat 1 22 0 216 67 0 0 chr1 239497653 239497683 -42695981 + (CA)n Simple_repeat Simple_repeat 1 30 0 183 156 0 0 chr1 239497824 239497856 -42695808 + CT-rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chr1 239497878 239497919 -42695745 + (CA)n Simple_repeat Simple_repeat 1 41 0 200 248 198 25 chr1 239498732 239498807 -42694857 + MIR SINE MIR 77 138 -124 252 0 0 0 chr1 239498807 239498835 -42694829 + (CTG)n Simple_repeat Simple_repeat 1 28 0 200 248 198 25 chr1 239498835 239498916 -42694748 + MIR SINE MIR 138 260 -2 360 270 27 113 chr1 239499046 239499231 -42694433 + MIR3 SINE MIR 28 197 -11 2150 134 16 0 chr1 239500119 239500424 -42693240 + AluSx SINE Alu 1 310 -2 252 167 0 0 chr1 239500424 239500472 -42693192 + GA-rich Low_complexity Low_complexity 1 48 0 702 0 0 0 chr1 239500472 239500550 -42693114 + (GGGAA)n Simple_repeat Simple_repeat 2 79 0 180 308 0 0 chr1 239500705 239500757 -42692907 - MIR SINE MIR -163 99 48 23 0 0 0 chr1 239500856 239500879 -42692785 + AT_rich Low_complexity Low_complexity 1 23 0 313 282 0 0 chr1 239502535 239502613 -42691051 - L3 LINE CR1 -2 1575 1498 810 273 9 44 chr1 239502756 239502983 -42690681 + MIR SINE MIR 8 226 -36 380 201 83 108 chr1 239503045 239503333 -42690331 - L1MC5 LINE L1 -52 7909 7629 216 0 0 0 chr1 239503346 239503370 -42690294 + (TC)n Simple_repeat Simple_repeat 1 24 0 657 201 77 98 chr1 239503381 239503655 -42690009 - L1MC5 LINE L1 -508 7453 7186 817 166 21 42 chr1 239503658 239503738 -42689926 - MER53 DNA DNA 0 189 109 8346 118 15 18 chr1 239503738 239505040 -42688624 + HSMAR2 DNA Mariner 4 1300 -2 817 166 21 42 chr1 239505040 239505152 -42688512 - MER53 DNA DNA -80 109 1 1382 250 51 55 chr1 239505154 239505851 -42687813 - L1MC5 LINE L1 -773 7188 6486 2110 139 7 0 chr1 239505851 239506161 -42687503 + AluSx SINE Alu 1 312 0 1382 250 51 55 chr1 239506161 239506226 -42687438 - L1MC5 LINE L1 -1475 6486 6422 340 360 79 38 chr1 239506320 239506612 -42687052 - L1MC4a LINE L1 -1442 6366 6063 233 298 90 90 chr1 239507055 239507233 -42686431 + MER5B DNA MER1_type 1 178 0 211 277 99 40 chr1 239507457 239507558 -42686106 - MIR SINE MIR -144 118 12 214 258 266 23 chr1 239507658 239507786 -42685878 - MIR3 SINE MIR -15 193 35 270 136 0 0 chr1 239508560 239508604 -42685060 + (CA)n Simple_repeat Simple_repeat 1 44 0 252 340 10 0 chr1 239509100 239509197 -42684467 + L3 LINE CR1 1421 1518 -59 1550 214 68 23 chr1 239509201 239509380 -42684284 + MLT1C LTR MaLR 7 176 -291 285 29 0 0 chr1 239509380 239509414 -42684250 + (CA)n Simple_repeat Simple_repeat 2 35 0 1550 214 68 23 chr1 239509414 239509674 -42683990 + MLT1C LTR MaLR 176 466 -1 207 316 18 0 chr1 239509675 239509732 -42683932 + MIR3 SINE MIR 145 202 -6 371 302 20 60 chr1 239510371 239510491 -42683173 + MIR SINE MIR 28 144 -64 2274 108 0 19 chr1 239510491 239510806 -42682858 + AluSc SINE Alu 1 309 0 371 302 20 60 chr1 239510806 239510834 -42682830 + MIR SINE MIR 144 172 -36 248 288 138 0 chr1 239511068 239511148 -42682516 - MIR SINE MIR -60 148 58 591 263 132 5 chr1 239511185 239511375 -42682289 - MIR SINE MIR -32 230 17 273 151 0 19 chr1 239512164 239512217 -42681447 + Alu SINE Alu 250 301 -1 453 278 21 42 chr1 239512293 239512437 -42681227 + MIR3 SINE MIR 5 145 -63 221 354 13 63 chr1 239512574 239512732 -42680932 - L2 LINE L2 -227 3045 2896 225 0 0 0 chr1 239513996 239514021 -42679643 + (T)n Simple_repeat Simple_repeat 1 25 0 495 268 16 8 chr1 239514111 239514238 -42679426 - MIR3 SINE MIR -47 161 34 389 291 9 9 chr1 239515801 239515911 -42677753 + MIR SINE MIR 35 144 -118 964 184 0 0 chr1 239515914 239516072 -42677592 + FRAM SINE Alu 1 154 -22 235 173 95 43 chr1 239517006 239517075 -42676589 - MIR SINE MIR -65 143 90 252 86 0 0 chr1 239517554 239517589 -42676075 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 244 282 43 31 chr1 239519719 239519839 -42673825 - MIR SINE MIR -46 216 93 23 0 0 0 chr1 239520488 239520511 -42673153 + AT_rich Low_complexity Low_complexity 1 23 0 464 250 0 0 chr1 239520605 239520709 -42672955 + L3 LINE CR1 1287 1390 -187 241 270 0 40 chr1 239520800 239520874 -42672790 + CT-rich Low_complexity Low_complexity 2 72 0 26 50 0 0 chr1 239521947 239521987 -42671677 + GC_rich Low_complexity Low_complexity 1 40 0 312 27 0 0 chr1 239522061 239522098 -42671566 + (CCG)n Simple_repeat Simple_repeat 3 39 0 21 57 0 0 chr1 239527228 239527263 -42666401 + AT_rich Low_complexity Low_complexity 1 35 0 212 346 39 31 chr1 239528432 239528562 -42665102 - L2 LINE L2 0 3272 3142 185 250 0 42 chr1 239530872 239530920 -42662744 + MIR SINE MIR 115 160 -102 185 302 0 0 chr1 239532157 239532210 -42661454 - MIR SINE MIR -80 128 76 442 337 43 0 chr1 239533287 239533450 -42660214 + L3 LINE CR1 1391 1560 -17 252 318 62 51 chr1 239534574 239534750 -42658914 + MIR SINE MIR 39 216 -46 206 238 0 0 chr1 239535736 239535778 -42657886 + GA-rich Low_complexity Low_complexity 3 44 0 647 236 81 33 chr1 239536264 239536502 -42657162 - MIR SINE MIR 0 262 1 205 353 47 40 chr1 239536982 239537132 -42656532 - L2 LINE L2 -24 3248 3098 381 168 126 25 chr1 239538398 239538517 -42655147 - L1ME4a LINE L1 -226 5895 5765 286 375 59 7 chr1 239538986 239539138 -42654526 + MIR SINE MIR 99 258 -4 1644 160 4 142 chr1 239540435 239540785 -42652879 - MLT1B LTR MaLR 0 390 114 1592 163 16 48 chr1 239540785 239541098 -42652566 + AluJb SINE Alu 1 303 -9 1644 160 4 142 chr1 239541098 239541198 -42652466 - MLT1B LTR MaLR -276 114 2 208 153 34 34 chr1 239542002 239542061 -42651603 + CT-rich Low_complexity Low_complexity 6 64 0 208 308 84 19 chr1 239542541 239542648 -42651016 - L3b LINE CR1 -141 1442 1329 261 287 47 87 chr1 239542934 239543084 -42650580 + MIR3 SINE MIR 39 182 -26 530 266 71 36 chr1 239544222 239544474 -42649190 - MIR SINE MIR 0 262 2 234 105 0 0 chr1 239544872 239544910 -42648754 + (A)n Simple_repeat Simple_repeat 1 38 0 276 312 46 81 chr1 239545017 239545190 -42648474 - MIR3 SINE MIR -27 181 15 2066 124 0 35 chr1 239545535 239545849 -42647815 + AluSg SINE Alu 1 303 -7 376 301 20 20 chr1 239545849 239545987 -42647677 - MIR SINE MIR -5 257 117 232 354 146 23 chr1 239547638 239547898 -42645766 + L3b LINE CR1 1199 1490 -93 224 295 48 38 chr1 239547886 239547991 -42645673 + MIR3 SINE MIR 13 118 -90 * 21 0 0 0 chr1 239548035 239548056 -42645608 + AT_rich Low_complexity Low_complexity 1 21 0 1141 257 82 48 chr1 239549743 239550235 -42643429 - L2 LINE L2 -6 3307 2787 465 239 11 10 chr1 239550485 239550769 -42642895 + (TCCA)n Simple_repeat Simple_repeat 1 284 0 201 225 34 0 chr1 239550803 239550892 -42642772 + (TCCA)n Simple_repeat Simple_repeat 2 93 0 399 312 22 43 chr1 239550893 239550981 -42642683 - L2 LINE L2 -1 3271 3186 1807 155 61 0 chr1 239550981 239551258 -42642406 + AluJb SINE Alu 1 294 -18 399 312 22 43 chr1 239551258 239551307 -42642357 - L2 LINE L2 -86 3186 3137 183 80 0 0 chr1 239551307 239551332 -42642332 + (GA)n Simple_repeat Simple_repeat 1 25 0 338 216 216 0 chr1 239551569 239551671 -42641993 + MIR SINE MIR 103 226 -36 784 292 49 0 chr1 239551938 239552164 -42641500 + MIR SINE MIR 14 250 -12 196 293 24 85 chr1 239552215 239552297 -42641367 + MIR3 SINE MIR 120 196 -12 613 265 27 29 chr1 239552882 239553079 -42640585 - MIR SINE MIR -59 149 5 511 323 19 6 chr1 239553403 239553564 -42640100 - MIR3 SINE MIR -4 204 42 665 189 13 46 chr1 239553694 239553847 -42639817 + MER63 DNA MER1_type 1 774 -62 317 323 137 0 chr1 239554561 239554685 -42638979 - MIR3 SINE MIR -33 175 35 2257 104 0 7 chr1 239554695 239554994 -42638670 - AluSc SINE Alu -12 297 1 303 262 131 19 chr1 239555211 239555318 -42638346 - MIR SINE MIR -56 206 88 189 0 0 0 chr1 239556401 239556422 -42637242 + (A)n Simple_repeat Simple_repeat 1 21 0 449 249 19 136 chr1 239557507 239557720 -42635944 + MER91A DNA MER1_type 1 188 -8 435 237 58 29 chr1 239557877 239558043 -42635621 - MIR3 SINE MIR -20 242 69 2362 91 0 0 chr1 239559100 239559429 -42634235 + AluSx SINE Alu 1 329 0 208 294 22 65 chr1 239559653 239559745 -42633919 + L2 LINE L2 3210 3297 -16 396 246 119 8 chr1 239559751 239559885 -42633779 - MIR SINE MIR -61 201 53 21 0 0 0 chr1 239560058 239560079 -42633585 + AT_rich Low_complexity Low_complexity 1 21 0 746 270 44 27 chr1 239560468 239560687 -42632977 + MIR SINE MIR 31 258 -4 207 287 149 11 chr1 239561476 239561570 -42632094 - MIR SINE MIR -78 130 24 476 282 110 39 chr1 239561630 239561939 -42631725 + L2 LINE L2 2553 2883 -431 356 338 87 23 chr1 239562021 239562287 -42631377 + L2 LINE L2 2972 3254 -18 708 306 20 19 chr1 239563115 239563427 -42630237 - L1ME LINE L1 -353 5811 5497 306 154 4 151 chr1 239563548 239563673 -42629991 + Charlie8 DNA MER1_type 232 2406 -11 292 263 59 17 chr1 239563932 239564050 -42629614 - MIR SINE MIR -60 202 80 225 277 69 146 chr1 239564062 239564207 -42629457 - MIR SINE MIR -6 256 101 1879 114 23 4 chr1 239564207 239564470 -42629194 + AluSq SINE Alu 1 268 -45 954 26 0 0 chr1 239564478 239564591 -42629073 + (GAAA)n Simple_repeat Simple_repeat 2 114 0 225 277 69 146 chr1 239564591 239564670 -42628994 - MIR SINE MIR -168 94 42 231 356 99 0 chr1 239565487 239565588 -42628076 - L2 LINE L2 -54 3218 3108 922 268 16 12 chr1 239566335 239566578 -42627086 - MIR SINE MIR -13 249 6 * 1027 258 12 0 chr1 239566575 239566815 -42626849 + L3 LINE CR1 1274 1516 -61 183 380 124 0 chr1 239567672 239567785 -42625879 + L2 LINE L2 3126 3252 -20 260 197 33 16 chr1 239568690 239568751 -42624913 - MIR SINE MIR -117 145 84 220 245 0 20 chr1 239569865 239569914 -42623750 - L3 LINE CR1 -12 1565 1518 410 243 243 14 chr1 239569945 239570093 -42623571 + MIR SINE MIR 20 201 -61 379 226 100 88 chr1 239570087 239570182 -42623482 - L2 LINE L2 0 3313 3221 * 2294 115 0 3 chr1 239570182 239570486 -42623178 + AluSx SINE Alu 1 303 -9 379 226 100 88 chr1 239570486 239570629 -42623035 - L2 LINE L2 -92 3221 3072 309 294 73 22 chr1 239570676 239570812 -42622852 + MIR SINE MIR 99 241 -21 233 394 103 0 chr1 239571237 239571392 -42622272 + MIR SINE MIR 89 259 -3 204 296 14 0 chr1 239571397 239571468 -42622196 + (CTA)n Simple_repeat Simple_repeat 1 72 0 1984 125 0 52 chr1 239571554 239571883 -42621781 + AluSx SINE Alu 1 312 0 421 255 17 130 chr1 239572525 239572740 -42620924 - MIR3 SINE MIR -10 198 6 2435 93 0 0 chr1 239572750 239573051 -42620613 - AluSc SINE Alu -8 301 1 783 257 41 29 chr1 239573415 239573660 -42620004 - MIR SINE MIR -3 259 12 300 305 38 19 chr1 239574638 239574743 -42618921 - L3b LINE CR1 -120 1463 1357 564 251 58 52 chr1 239575331 239575522 -42618142 + MIR SINE MIR 46 237 -25 180 219 141 16 chr1 239577212 239577276 -42616388 - L3 LINE CR1 -1191 386 315 486 184 0 0 chr1 239577383 239577459 -42616205 - AluJ/FLAM SINE Alu -235 77 2 278 222 241 21 chr1 239577675 239577818 -42615846 - MIR SINE MIR -66 142 25 2444 115 0 0 chr1 239578288 239578601 -42615063 - AluSp SINE Alu 0 313 1 225 0 0 0 chr1 239578872 239578897 -42614767 + (CA)n Simple_repeat Simple_repeat 1 25 0 279 275 66 48 chr1 239579269 239579436 -42614228 + L2 LINE L2 2905 3074 -198 916 276 15 30 chr1 239579446 239579711 -42613953 + MIR SINE MIR 2 262 0 1086 199 43 9 chr1 239580467 239580678 -42612986 + MER20 DNA MER1_type 2 219 0 589 253 99 90 chr1 239580686 239580919 -42612745 - MIR SINE MIR -6 256 22 656 350 54 0 chr1 239581411 239581651 -42612013 + MIR SINE MIR 9 261 -1 187 207 24 122 chr1 239582421 239582469 -42611195 - MIR SINE MIR -70 192 154 2516 87 0 0 chr1 239582469 239582778 -42610886 - AluSq SINE Alu -4 309 1 187 207 24 122 chr1 239582778 239582811 -42610853 - MIR SINE MIR -108 154 119 349 248 220 40 chr1 239583145 239583344 -42610320 + MIR SINE MIR 4 230 -32 2870 13 0 6 chr1 239584184 239584499 -42609165 + AluYb8 SINE Alu 1 313 -5 288 77 0 0 chr1 239585469 239585508 -42608156 + (T)n Simple_repeat Simple_repeat 1 39 0 1017 226 5 0 chr1 239587114 239587322 -42606342 + MER3 DNA MER1_type 1 209 0 297 189 288 27 chr1 239588521 239588632 -42605032 + MIR3 SINE MIR 58 197 -11 2377 107 0 0 chr1 239588740 239589050 -42604614 - AluSg SINE Alu 0 310 1 225 0 0 0 chr1 239589135 239589160 -42604504 + (AGCTG)n Simple_repeat Simple_repeat 2 26 0 379 266 101 51 chr1 239590501 239590659 -42603005 + MIR SINE MIR 66 231 -31 25 0 0 0 chr1 239591020 239591045 -42602619 + AT_rich Low_complexity Low_complexity 1 25 0 998 190 0 65 chr1 239592275 239592475 -42601189 - MER5A DNA MER1_type -1 188 2 505 281 175 15 chr1 239596224 239596438 -42597226 + MIR SINE MIR 10 260 -2 413 286 160 30 chr1 239596564 239596795 -42596869 - MIR SINE MIR 0 262 2 181 56 28 28 chr1 239597903 239597939 -42595725 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1893 141 0 7 chr1 239597948 239598218 -42595446 - AluSx SINE Alu -44 268 1 359 221 79 47 chr1 239599099 239599226 -42594438 - MIR SINE MIR 0 262 132 1599 154 15 26 chr1 239599234 239599507 -42594157 - AluJo SINE Alu -26 286 17 401 268 32 68 chr1 239599590 239599780 -42593884 + MIR SINE MIR 80 262 0 189 288 27 125 chr1 239600054 239600230 -42593434 + L2 LINE L2 3023 3182 -90 275 0 29 0 chr1 239600230 239600265 -42593399 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 327 323 18 55 chr1 239601214 239601378 -42592286 - MIR3 SINE MIR -35 173 16 333 0 0 0 chr1 239602341 239602378 -42591286 + (A)n Simple_repeat Simple_repeat 1 37 0 456 279 122 0 chr1 239602464 239602611 -42591053 + MIR SINE MIR 28 192 -70 504 223 116 0 chr1 239602623 239602735 -42590929 - L2 LINE L2 0 3313 3189 475 329 61 5 chr1 239602906 239603105 -42590559 - MIR SINE MIR -50 212 4 619 236 33 22 chr1 239605567 239605783 -42587881 + MIR SINE MIR 6 222 -40 386 232 37 0 chr1 239607218 239607300 -42586364 - L2 LINE L2 -4 3309 3225 217 167 71 0 chr1 239607442 239607484 -42586180 - L2 LINE L2 -213 3059 3015 1030 257 9 0 chr1 239608223 239608445 -42585219 + MIR SINE MIR 2 225 -37 447 284 44 27 chr1 239608582 239608765 -42584899 - MIR3 SINE MIR -7 201 16 282 247 163 27 chr1 239609410 239609535 -42584129 - MIR SINE MIR -56 152 22 232 286 71 12 chr1 239610346 239610430 -42583234 + L2 LINE L2 3171 3259 -13 218 308 22 33 chr1 239610465 239610556 -42583108 + MIR SINE MIR 103 192 -70 203 350 120 8 chr1 239611671 239611788 -42581876 + MIR SINE MIR 63 192 -70 202 269 8 50 chr1 239612716 239612835 -42580829 + GA-rich Low_complexity Low_complexity 1 114 0 205 218 36 0 chr1 239612994 239613049 -42580615 + CT-rich Low_complexity Low_complexity 1 57 0 216 111 0 0 chr1 239613256 239613292 -42580372 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 498 204 56 3 chr1 239614492 239614635 -42579029 + MIR SINE MIR 13 165 -43 191 333 20 10 chr1 239616139 239616241 -42577423 - MIR SINE MIR -41 221 119 870 282 3 18 chr1 239617654 239617874 -42575790 + MIR SINE MIR 43 258 -4 273 345 179 48 chr1 239617912 239618286 -42575378 - L2 LINE L2 0 3272 2850 468 51 0 0 chr1 239618326 239618385 -42575279 + (TG)n Simple_repeat Simple_repeat 1 59 0 433 343 28 17 chr1 239618499 239618680 -42574984 - L2 LINE L2 -566 2748 2566 452 283 140 11 chr1 239619194 239619415 -42574249 + MIR SINE MIR 1 251 -11 180 111 0 0 chr1 239620822 239620849 -42572815 + (TG)n Simple_repeat Simple_repeat 2 28 0 192 158 0 0 chr1 239621186 239621224 -42572440 + (TG)n Simple_repeat Simple_repeat 2 39 0 289 139 47 12 chr1 239621442 239621528 -42572136 + (CA)n Simple_repeat Simple_repeat 2 90 0 412 163 58 9 chr1 239621560 239621894 -42571770 + (CA)n Simple_repeat Simple_repeat 1 350 0 263 258 75 142 chr1 239622183 239622451 -42571213 + L2 LINE L2 3004 3253 -19 380 303 20 43 chr1 239622472 239622667 -42570997 - MIR SINE MIR -40 168 18 198 103 0 0 chr1 239622766 239622795 -42570869 + (CTA)n Simple_repeat Simple_repeat 1 29 0 632 280 38 19 chr1 239623307 239623518 -42570146 + MIR SINE MIR 35 249 -13 419 289 202 35 chr1 239623543 239623721 -42569943 - L3b LINE CR1 -48 1535 1388 1834 160 7 10 chr1 239623721 239624015 -42569649 + AluJb SINE Alu 1 293 -19 419 289 202 35 chr1 239624015 239624148 -42569516 - L3b LINE CR1 -195 1388 1172 219 272 144 48 chr1 239626777 239626902 -42566762 - L2 LINE L2 0 3272 3136 736 193 105 18 chr1 239627589 239627760 -42565904 + MER5A DNA MER1_type 2 187 -2 806 178 59 24 chr1 239627773 239627942 -42565722 - MER5B DNA MER1_type -3 175 1 451 223 74 23 chr1 239630301 239630476 -42563188 - HAL1b LINE L1 -7 1341 1158 211 338 14 0 chr1 239631448 239631519 -42562145 + MIR SINE MIR 51 122 -140 487 231 71 59 chr1 239631707 239631876 -42561788 + MIR3 SINE MIR 37 207 -1 2028 127 0 41 chr1 239631954 239632292 -42561372 - AluSx SINE Alu 0 312 6 917 93 0 0 chr1 239632321 239632439 -42561225 - AluJb SINE Alu -194 118 1 2049 170 6 0 chr1 239632554 239632907 -42560757 - MER47A DNA MER2_type 0 366 12 598 274 152 17 chr1 239633938 239634168 -42559496 + MIR SINE MIR 2 262 0 1560 247 52 27 chr1 239634702 239635147 -42558517 - MLT1G LTR MaLR 0 590 135 325 198 139 23 chr1 239635249 239635335 -42558329 - MIR3 SINE MIR -3 205 110 23 0 0 0 chr1 239636789 239636812 -42556852 + AT_rich Low_complexity Low_complexity 1 23 0 264 292 42 62 chr1 239637136 239637280 -42556384 - MIR3 SINE MIR -59 149 9 185 211 64 110 chr1 239637650 239637759 -42555905 - L2 LINE L2 -68 3245 3142 211 181 106 96 chr1 239637893 239637987 -42555677 - MIR3 SINE MIR -15 193 99 875 235 70 5 chr1 239638067 239638280 -42555384 + MIR SINE MIR 35 261 -1 482 319 32 22 chr1 239638460 239638645 -42555019 - MIR SINE MIR -56 206 20 336 356 32 21 chr1 239638980 239639168 -42554496 - MIR SINE MIR -48 214 25 308 372 104 26 chr1 239641250 239641481 -42552183 - L2 LINE L2 -126 3146 2898 315 337 0 0 chr1 239641949 239642035 -42551629 + L2 LINE L2 3212 3297 -16 2363 75 20 7 chr1 239642037 239642343 -42551321 + AluY SINE Alu 1 310 -1 1302 76 6 0 chr1 239642495 239642652 -42551012 + AluSp SINE Alu 145 302 -11 1623 160 52 39 chr1 239642665 239642972 -42550692 + AluJo SINE Alu 1 311 -1 2467 76 16 0 chr1 239642972 239643276 -42550388 + AluY SINE Alu 1 309 -2 433 228 118 53 chr1 239643388 239643568 -42550096 + MIR SINE MIR 34 221 -41 544 294 101 18 chr1 239645253 239645481 -42548183 + MIR SINE MIR 2 248 -14 2544 84 0 0 chr1 239647271 239647581 -42546083 - AluSq SINE Alu -3 310 1 1832 118 0 0 chr1 239647600 239647863 -42545801 - L1PA14 LINE L1 -9 6152 5890 1859 133 34 34 chr1 239648728 239649082 -42544582 + L1MB8 LINE L1 5824 6177 -1 204 330 0 23 chr1 239649225 239649313 -42544351 + CT-rich Low_complexity Low_complexity 4 89 0 403 303 52 56 chr1 239649417 239649668 -42543996 - MIR SINE MIR -2 260 11 288 285 22 22 chr1 239650037 239650216 -42543448 + (TG)n Simple_repeat Simple_repeat 2 180 0 2028 98 107 23 chr1 239650239 239650585 -42543079 - THE1C LTR MaLR 0 375 1 467 289 187 6 chr1 239651285 239651451 -42542213 + MER91A DNA MER1_type 1 196 0 2314 109 3 16 chr1 239652064 239652377 -42541287 + AluSx SINE Alu 1 309 -3 212 311 156 25 chr1 239654623 239654745 -42538919 - L3 LINE CR1 -1 1576 1439 708 294 133 59 chr1 239654830 239655273 -42538391 - L3 LINE CR1 -310 1267 792 304 342 50 17 chr1 239655667 239655787 -42537877 + L2 LINE L2 3144 3267 -5 345 293 78 17 chr1 239657367 239657483 -42536181 + MIR SINE MIR 80 202 -60 933 204 53 91 chr1 239659617 239659730 -42533934 - MIR SINE MIR -1 261 145 1643 176 68 4 chr1 239659730 239660008 -42533656 - AluJo SINE Alu -16 296 1 933 204 53 91 chr1 239660008 239660158 -42533506 - MIR SINE MIR -117 145 8 2198 132 0 0 chr1 239660231 239660535 -42533129 + AluSg SINE Alu 1 304 -6 2391 82 105 9 chr1 239660546 239660888 -42532776 + MER51B LTR ERV1 1 375 -2 289 297 0 40 chr1 239660888 239660984 -42532680 - L3b LINE CR1 -209 1374 1283 378 0 0 0 chr1 239661607 239661649 -42532015 + (TG)n Simple_repeat Simple_repeat 1 42 0 221 146 21 0 chr1 239661649 239661697 -42531967 + GA-rich Low_complexity Low_complexity 2 50 0 993 124 0 7 chr1 239662101 239662238 -42531426 + AluJo SINE Alu 1 136 -176 25 0 0 0 chr1 239662996 239663021 -42530643 + AT_rich Low_complexity Low_complexity 1 25 0 309 239 310 0 chr1 239663071 239663184 -42530480 - MIR3 SINE MIR -21 187 40 216 287 52 43 chr1 239664129 239664244 -42529420 + L2 LINE L2 3182 3297 -16 306 332 56 17 chr1 239666563 239666776 -42526888 - MIR3 SINE MIR -39 223 3 474 286 71 22 chr1 239666784 239666966 -42526698 + MER63A DNA MER1_type 1 191 -19 2340 92 3 0 chr1 239668222 239668516 -42525148 - AluSc SINE Alu -14 295 1 234 350 109 44 chr1 239668526 239668663 -42525001 + L2 LINE L2 3125 3270 -2 566 124 22 0 chr1 239670468 239670557 -42523107 + MER5A DNA MER1_type 1 91 -98 201 262 206 16 chr1 239671071 239671197 -42522467 - MIR SINE MIR -60 202 53 210 143 0 0 chr1 239671367 239671402 -42522262 - MIR SINE MIR -108 154 120 230 233 0 0 chr1 239672155 239672198 -42521466 + (TG)n Simple_repeat Simple_repeat 2 44 0 369 86 0 0 chr1 239673051 239673109 -42520555 + (TC)n Simple_repeat Simple_repeat 1 58 0 339 44 0 0 chr1 239673123 239673168 -42520496 + (GA)n Simple_repeat Simple_repeat 2 46 0 295 335 114 69 chr1 239673862 239674107 -42519557 - L2 LINE L2 -30 3242 2987 296 268 63 35 chr1 239674520 239674662 -42519002 - MER20B DNA MER1_type -607 176 31 26 0 0 0 chr1 239675979 239676005 -42517659 + AT_rich Low_complexity Low_complexity 1 26 0 710 73 0 0 chr1 239676005 239676101 -42517563 - L1MA1 LINE L1 0 6302 6207 209 310 0 0 chr1 239676243 239676301 -42517363 + G-rich Low_complexity Low_complexity 6 63 0 745 288 55 5 chr1 239678404 239678623 -42515041 - MIR SINE MIR -19 243 14 521 312 93 33 chr1 239679226 239679441 -42514223 + MIR SINE MIR 18 245 -17 474 326 96 17 chr1 239680284 239680514 -42513150 - MIR SINE MIR -4 258 11 703 210 25 19 chr1 239681936 239682093 -42511571 - MIR SINE MIR -56 206 49 212 157 59 0 chr1 239683074 239683125 -42510539 + (CATTT)n Simple_repeat Simple_repeat 2 55 0 2132 173 36 9 chr1 239683183 239683604 -42510060 - L1MC4a LINE L1 0 7808 7377 1939 200 22 77 chr1 239683617 239683793 -42509871 + L1MC4 LINE L1 6925 7109 -933 1605 175 0 42 chr1 239683793 239684079 -42509585 + AluJo SINE Alu 9 282 -30 2284 113 3 10 chr1 239684079 239684388 -42509276 - AluSx SINE Alu -5 307 1 1939 200 22 77 chr1 239684388 239684804 -42508860 + L1MC4 LINE L1 7107 7485 -557 2296 120 3 0 chr1 239684826 239685135 -42508529 - AluSx SINE Alu -2 310 1 2231 167 59 11 chr1 239686112 239686556 -42507108 - MLT1C LTR MaLR 0 467 3 258 267 0 0 chr1 239686607 239686667 -42506997 - L2 LINE L2 0 3313 3254 385 229 49 41 chr1 239687033 239687155 -42506509 - MIR SINE MIR -76 186 64 216 111 0 0 chr1 239688617 239688653 -42505011 + (CA)n Simple_repeat Simple_repeat 2 37 0 548 313 40 44 chr1 239689306 239689555 -42504109 - MIR SINE MIR 0 262 15 627 250 44 0 chr1 239690126 239690306 -42503358 + MIR SINE MIR 64 251 -11 469 241 129 30 chr1 239691575 239691807 -42501857 + L3b LINE CR1 1103 1357 -226 304 301 103 13 chr1 239692124 239692280 -42501384 - L2 LINE L2 -179 3093 2924 6255 113 117 15 chr1 239692340 239692802 -42500862 - Tigger3b DNA MER2_type -1797 1231 818 2468 77 3 0 chr1 239692802 239693100 -42500564 - AluSp SINE Alu -14 299 1 6255 113 117 15 chr1 239693100 239693754 -42499910 - Tigger3b DNA MER2_type -2210 818 1 246 81 0 0 chr1 239694096 239694133 -42499531 + (CA)n Simple_repeat Simple_repeat 1 37 0 498 287 149 7 chr1 239694641 239694869 -42498795 - MIR SINE MIR -4 258 1 510 312 119 70 chr1 239695714 239696317 -42497347 - L2 LINE L2 -466 2848 2216 237 258 0 0 chr1 239697642 239697704 -42495960 + MIR SINE MIR 30 91 -117 269 254 44 35 chr1 239698179 239698293 -42495371 + MIR3 SINE MIR 90 204 -4 191 255 184 10 chr1 239698746 239698844 -42494820 + L2 LINE L2 3137 3251 -21 339 309 40 20 chr1 239698921 239699070 -42494594 - MIR SINE MIR -91 171 20 349 317 28 44 chr1 239700375 239700555 -42493109 - MIR SINE MIR -51 211 35 376 323 16 8 chr1 239702126 239702253 -42491411 + MIR3 SINE MIR 41 168 -40 643 262 0 7 chr1 239702796 239702945 -42490719 + MIR SINE MIR 2 149 -113 211 224 86 0 chr1 239705286 239705344 -42488320 - L2 LINE L2 -5 3267 3205 461 297 27 7 chr1 239705362 239705510 -42488154 - MIR3 SINE MIR 0 208 58 404 246 101 22 chr1 239706822 239706960 -42486704 - MIR3 SINE MIR -15 193 45 237 224 412 0 chr1 239708344 239708429 -42485235 + L2 LINE L2 3151 3270 -2 1854 144 31 17 chr1 239709322 239709613 -42484051 - AluJb SINE Alu -17 295 1 349 305 40 20 chr1 239709772 239709923 -42483741 + MIR SINE MIR 13 166 -96 22 0 0 0 chr1 239710060 239710082 -42483582 + AT_rich Low_complexity Low_complexity 1 22 0 559 318 17 0 chr1 239710382 239710555 -42483109 - MIR3 SINE MIR -1 207 32 2244 151 129 22 chr1 239710876 239711380 -42482284 - MER74A LTR ERVL 0 558 1 2415 96 0 0 chr1 239712904 239713207 -42480457 + AluSx SINE Alu 1 303 -9 182 281 0 35 chr1 239713234 239713291 -42480373 - L2 LINE L2 -1 3271 3217 * 341 254 70 52 chr1 239713289 239713321 -42480343 + L2 LINE L2 2837 2867 -405 360 0 0 0 chr1 239713321 239713361 -42480303 + (CA)n Simple_repeat Simple_repeat 2 41 0 341 254 70 52 chr1 239713361 239713541 -42480123 + L2 LINE L2 2867 3053 -219 312 102 0 0 chr1 239713568 239713617 -42480047 + (CA)n Simple_repeat Simple_repeat 1 49 0 243 191 96 75 chr1 239713753 239713847 -42479817 + L2 LINE L2 3177 3272 0 232 203 13 25 chr1 239716723 239716802 -42476862 - L1ME4a LINE L1 -38 6083 6006 394 294 25 0 chr1 239718301 239718420 -42475244 + MIR SINE MIR 48 169 -93 793 226 43 39 chr1 239718445 239718653 -42475011 - MER3 DNA MER1_type 0 209 1 896 217 18 35 chr1 239719405 239719631 -42474033 - MIR SINE MIR -3 259 38 435 233 62 27 chr1 239719869 239720015 -42473649 - MIR3 SINE MIR -52 156 6 356 300 36 29 chr1 239721920 239722060 -42471604 + MER5B DNA MER1_type 1 141 -37 181 0 0 65 chr1 239722068 239722099 -42471565 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 361 302 99 28 chr1 239722207 239722419 -42471245 + MIR SINE MIR 22 248 -14 352 276 181 0 chr1 239722894 239723021 -42470643 + MIR SINE MIR 3 152 -110 184 240 20 0 chr1 239723402 239723452 -42470212 - L2 LINE L2 0 3313 3263 180 0 0 0 chr1 239723514 239723534 -42470130 + (ATG)n Simple_repeat Simple_repeat 1 20 0 521 231 192 0 chr1 239723550 239723732 -42469932 - MIR SINE MIR -2 260 44 500 288 16 49 chr1 239724850 239725034 -42468630 + MIR SINE MIR 7 184 -78 1001 180 29 103 chr1 239725044 239725394 -42468270 - MER33 DNA MER1_type 0 324 1 690 161 8 0 chr1 239725941 239726059 -42467605 - MER94 DNA DNA -2 132 14 731 163 0 22 chr1 239726964 239727099 -42466565 + FLAM_C SINE Alu 2 133 0 1008 279 12 0 chr1 239731519 239731766 -42461898 - MIR SINE MIR -5 257 8 214 211 0 0 chr1 239733485 239733523 -42460141 + A-rich Low_complexity Low_complexity 1 38 0 323 307 61 0 chr1 239736300 239736414 -42457250 - L2 LINE L2 0 3313 3193 251 389 49 0 chr1 239737286 239737430 -42456234 - L3b LINE CR1 -142 1441 1291 414 0 0 0 chr1 239738068 239738114 -42455550 + (CA)n Simple_repeat Simple_repeat 2 47 0 288 389 0 9 chr1 239738361 239738469 -42455195 - L2 LINE L2 -41 3231 3125 356 311 0 0 chr1 239739854 239739944 -42453720 + L2 LINE L2 3183 3272 0 322 284 0 37 chr1 239740051 239740132 -42453532 - MIR SINE MIR -139 123 46 187 323 15 83 chr1 239740289 239740422 -42453242 - L2 LINE L2 -1 3312 3189 714 258 70 5 chr1 239740869 239741055 -42452609 + MIR SINE MIR 17 214 -48 2422 70 0 32 chr1 239741101 239741414 -42452250 - AluY SINE Alu -8 303 1 2256 169 29 15 chr1 239742055 239742103 -42451561 - MLT2D LTR ERVL 0 414 368 468 0 0 0 chr1 239742103 239742155 -42451509 + (TG)n Simple_repeat Simple_repeat 2 53 0 2256 169 29 15 chr1 239742155 239742514 -42451150 - MLT2D LTR ERVL -46 368 1 460 339 36 5 chr1 239743654 239743849 -42449815 - MIR SINE MIR -14 248 48 238 358 83 8 chr1 239744126 239744246 -42449418 + MIR3 SINE MIR 58 186 -22 244 191 0 0 chr1 239745088 239745130 -42448534 + MIR SINE MIR 71 112 -150 367 348 98 5 chr1 239746214 239746418 -42447246 + MIR SINE MIR 28 250 -12 478 332 45 28 chr1 239746778 239747025 -42446639 + L1M4 LINE L1 4771 5021 -1125 * 822 272 46 124 chr1 239746993 239747469 -42446195 + L1ME4a LINE L1 4469 4981 -1165 1968 154 0 3 chr1 239747469 239747768 -42445896 - AluJb SINE Alu -14 298 1 822 272 46 124 chr1 239747768 239747922 -42445742 + L1ME4a LINE L1 4981 5021 -1125 1589 150 0 85 chr1 239747922 239748229 -42445435 + AluJb SINE Alu 11 291 -21 822 272 46 124 chr1 239748229 239748427 -42445237 + L1ME4a LINE L1 5021 5233 -913 853 292 92 27 chr1 239748444 239749015 -42444649 + L1ME4a LINE L1 5255 5861 -260 289 250 210 0 chr1 239749483 239749583 -42444081 + L2 LINE L2 3152 3272 0 347 278 123 49 chr1 239750661 239750823 -42442841 - MIR SINE MIR -70 192 19 824 343 138 22 chr1 239750958 239751935 -42441729 - L2 LINE L2 -19 3253 2171 1868 177 3 6 chr1 239752750 239753061 -42440603 - AluJo SINE Alu 0 312 3 1188 223 118 70 chr1 239753329 239753869 -42439795 - MLT1F1 LTR MaLR -2 565 1 2254 121 0 0 chr1 239753942 239754247 -42439417 + AluSq SINE Alu 1 305 -8 2153 102 3 11 chr1 239754503 239754832 -42438832 + AluSx SINE Alu 1 327 0 317 254 236 0 chr1 239755524 239755634 -42438030 - L2 LINE L2 -4 3268 3133 192 360 0 11 chr1 239756397 239756486 -42437178 - L3b LINE CR1 -158 1425 1338 773 196 58 17 chr1 239758406 239758579 -42435085 + MER5A DNA MER1_type 5 184 -5 738 199 19 56 chr1 239758628 239758789 -42434875 - MER5A DNA MER1_type -34 155 1 1608 148 124 27 chr1 239758908 239759239 -42434425 - MLT1A1 LTR MaLR 0 365 3 1331 209 118 15 chr1 239759245 239759584 -42434080 + MLT1A2 LTR MaLR 1 374 0 416 181 181 0 chr1 239760374 239760468 -42433196 + MER81 DNA DNA 4 114 0 1490 260 47 70 chr1 239760502 239760604 -42433060 - L2 LINE L2 0 3313 3210 1711 173 33 17 chr1 239760604 239760905 -42432759 + AluJo SINE Alu 1 306 -6 1490 260 47 70 chr1 239760905 239761677 -42431987 - L2 LINE L2 -103 3210 2451 240 310 0 0 chr1 239761993 239762064 -42431600 + MIR SINE MIR 170 240 -22 201 121 0 0 chr1 239763052 239763085 -42430579 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 387 89 0 0 chr1 239763785 239763841 -42429823 + (CA)n Simple_repeat Simple_repeat 1 56 0 249 219 42 126 chr1 239764520 239764639 -42429025 + MIR SINE MIR 25 134 -74 306 150 17 0 chr1 239764716 239764776 -42428888 + L1MC4a LINE L1 7168 7228 -580 560 210 0 8 chr1 239764777 239764896 -42428768 + MLT1F1 LTR MaLR 3 120 -447 2910 57 0 3 chr1 239764965 239765332 -42428332 - L1PA8 LINE L1 0 6172 5807 2456 181 38 4 chr1 239765472 239765970 -42427694 + L1MD3 LINE L1 7481 7995 0 360 240 104 48 chr1 239767244 239767369 -42426295 - L2 LINE L2 0 3313 3182 1741 179 70 8 chr1 239767413 239767699 -42425965 - MLT2C1 LTR ERVL 0 397 81 2224 142 0 0 chr1 239767699 239768008 -42425656 + AluSx SINE Alu 1 309 -3 1741 179 70 8 chr1 239768008 239768095 -42425569 - MLT2C1 LTR ERVL -316 81 1 263 319 110 16 chr1 239769821 239769964 -42423700 - MIR SINE MIR -22 186 23 2206 144 70 33 chr1 239769966 239770423 -42423241 + L1MB3 LINE L1 5710 6183 0 1957 127 31 21 chr1 239770660 239770951 -42422713 - AluSx SINE Alu -18 294 1 310 315 9 19 chr1 239770954 239771062 -42422602 + L3 LINE CR1 1469 1575 -2 296 276 11 0 chr1 239771579 239771666 -42421998 + L2 LINE L2 2506 2593 -721 605 267 54 13 chr1 239772059 239772399 -42421265 - L2 LINE L2 0 3313 2427 876 157 0 15 chr1 239772400 239772534 -42421130 + FLAM_C SINE Alu 2 133 0 195 299 104 0 chr1 239772538 239772615 -42421049 + MIR SINE MIR 175 259 -3 2090 140 75 45 chr1 239772911 239772975 -42420689 - Tigger2a DNA MER2_type -2274 434 373 1122 37 0 0 chr1 239772975 239773109 -42420555 + L1PB1 LINE L1 6018 6151 0 2090 140 75 45 chr1 239773109 239773444 -42420220 - Tigger2a DNA MER2_type -2335 373 23 2456 181 38 4 chr1 239774822 239775320 -42418344 - L1MD3 LINE L1 0 7995 7481 2940 57 0 0 chr1 239775460 239775826 -42417838 + L1PA8 LINE L1 5807 6172 0 585 188 0 27 chr1 239775885 239776015 -42417649 - MLT1F1 LTR MaLR -447 120 3 306 150 17 0 chr1 239776016 239776076 -42417588 - L1MC4a LINE L1 -580 7228 7168 249 219 42 126 chr1 239776153 239776272 -42417392 - MIR SINE MIR -74 134 25 333 100 0 0 chr1 239776951 239777001 -42416663 + (TG)n Simple_repeat Simple_repeat 1 50 0 222 91 0 0 chr1 239777701 239777734 -42415930 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 240 310 0 0 chr1 239778722 239778793 -42414871 - MIR SINE MIR -22 240 170 1490 260 47 70 chr1 239779109 239779881 -42413783 + L2 LINE L2 2451 3210 -103 1710 183 27 10 chr1 239779881 239780182 -42413482 - AluJo SINE Alu -6 306 1 1490 260 47 70 chr1 239780182 239780284 -42413380 + L2 LINE L2 3210 3313 0 416 181 181 0 chr1 239780318 239780412 -42413252 - MER81 DNA DNA 0 114 4 1331 209 118 15 chr1 239781202 239781541 -42412123 - MLT1A2 LTR MaLR 0 374 1 1608 148 124 27 chr1 239781547 239781878 -42411786 + MLT1A1 LTR MaLR 3 365 0 738 199 19 56 chr1 239781997 239782158 -42411506 + MER5A DNA MER1_type 1 155 -34 773 196 58 17 chr1 239782207 239782380 -42411284 - MER5A DNA MER1_type -5 184 5 192 360 0 11 chr1 239784300 239784389 -42409275 + L3b LINE CR1 1338 1425 -158 317 254 236 0 chr1 239785152 239785262 -42408402 + L2 LINE L2 3133 3268 -4 2152 102 3 11 chr1 239785981 239786310 -42407354 - AluSx SINE Alu 0 327 1 2288 118 0 0 chr1 239786566 239786871 -42406793 - AluSq SINE Alu -8 305 1 1188 223 118 70 chr1 239786944 239787484 -42406180 + MLT1F1 LTR MaLR 1 565 -2 1868 177 3 6 chr1 239787752 239788063 -42405601 + AluJo SINE Alu 3 312 0 824 343 138 22 chr1 239788878 239789855 -42403809 + L2 LINE L2 2171 3253 -19 345 278 123 49 chr1 239789990 239790152 -42403512 + MIR SINE MIR 19 192 -70 286 250 210 0 chr1 239791230 239791330 -42402334 - L2 LINE L2 0 3272 3152 928 292 93 27 chr1 239791798 239792369 -42401295 - L1ME4a LINE L1 -260 5861 5255 801 251 61 140 chr1 239792386 239792584 -42401080 - L1ME4a LINE L1 -913 5233 5021 1454 150 0 85 chr1 239792584 239792891 -42400773 - AluJb SINE Alu -21 291 11 801 251 61 140 chr1 239792891 239793045 -42400619 - L1ME4a LINE L1 -1125 5021 4857 1823 154 0 3 chr1 239793045 239793344 -42400320 + AluJb SINE Alu 1 298 -14 801 251 61 140 chr1 239793344 239793820 -42399844 - L1ME4a LINE L1 -1289 4857 4469 464 332 45 28 chr1 239793788 239794035 -42399629 - L1M4 LINE L1 -1125 5021 4771 * 364 348 98 5 chr1 239794395 239794599 -42399065 - MIR SINE MIR -12 250 28 242 191 0 0 chr1 239795683 239795725 -42397939 - MIR SINE MIR -150 112 71 238 358 83 8 chr1 239796567 239796687 -42396977 - MIR3 SINE MIR -22 186 58 457 349 36 5 chr1 239796964 239797159 -42396505 + MIR SINE MIR 48 248 -14 2229 169 29 15 chr1 239798299 239798658 -42395006 + MLT2D LTR ERVL 1 368 -46 468 0 0 0 chr1 239798658 239798710 -42394954 + (CA)n Simple_repeat Simple_repeat 2 53 0 2229 169 29 15 chr1 239798710 239798758 -42394906 + MLT2D LTR ERVL 368 414 0 2277 70 0 32 chr1 239799399 239799712 -42393952 + AluY SINE Alu 1 303 -8 721 249 73 6 chr1 239799767 239799944 -42393720 - MIR SINE MIR -57 205 17 184 338 15 83 chr1 239800391 239800524 -42393140 + L2 LINE L2 3189 3312 -1 319 284 0 37 chr1 239800681 239800762 -42392902 + MIR SINE MIR 46 123 -139 353 311 0 0 chr1 239800869 239800959 -42392705 - L2 LINE L2 0 3272 3183 316 389 0 9 chr1 239802344 239802452 -42391212 + L2 LINE L2 3125 3231 -41 450 0 0 0 chr1 239802699 239802749 -42390915 + (TG)n Simple_repeat Simple_repeat 2 51 0 237 361 56 7 chr1 239803387 239803531 -42390133 + L3b LINE CR1 1291 1441 -142 356 240 104 48 chr1 239804344 239804469 -42389195 - L2 LINE L2 0 3313 3182 1721 183 64 11 chr1 239804513 239804799 -42388865 - MLT2C1 LTR ERVL 0 397 85 2066 141 0 0 chr1 239804799 239805105 -42388559 + AluSx SINE Alu 1 306 -6 1721 183 64 11 chr1 239805105 239805195 -42388469 - MLT2C1 LTR ERVL -312 85 1 265 319 110 16 chr1 239806921 239807064 -42386600 - MIR SINE MIR -22 186 23 2249 140 70 33 chr1 239807066 239807523 -42386141 + L1MB3 LINE L1 5710 6183 0 1812 127 31 21 chr1 239807760 239808051 -42385613 - AluSx SINE Alu -18 294 1 308 315 9 19 chr1 239808054 239808162 -42385502 + L3 LINE CR1 1469 1575 -2 290 276 11 0 chr1 239808679 239808766 -42384898 + L2 LINE L2 2506 2593 -721 603 267 54 13 chr1 239809159 239809499 -42384165 - L2 LINE L2 0 3313 2427 858 157 0 15 chr1 239809500 239809634 -42384030 + FLAM_C SINE Alu 2 133 0 196 299 104 0 chr1 239809638 239809715 -42383949 + MIR SINE MIR 175 259 -3 2214 138 75 45 chr1 239810011 239810075 -42383589 - Tigger2a DNA MER2_type -2274 434 373 1126 37 0 0 chr1 239810075 239810209 -42383455 + L1PB1 LINE L1 6018 6151 0 2214 138 75 45 chr1 239810209 239810544 -42383120 - Tigger2a DNA MER2_type -2335 373 23 6017 180 39 28 chr1 239811112 239812382 -42381282 + Charlie1a DNA MER1_type 7 1290 -165 1811 156 24 0 chr1 239812382 239812671 -42380993 - AluJb SINE Alu -15 297 2 1435 164 16 4 chr1 239812673 239812929 -42380735 - AluJo SINE Alu -10 302 44 250 24 0 49 chr1 239812930 239812971 -42380693 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1414 73 0 78 chr1 239812971 239813189 -42380475 - AluY SINE Alu -27 284 84 742 151 24 30 chr1 239813189 239813355 -42380309 + Charlie1a DNA MER1_type 1291 1455 0 248 301 48 29 chr1 239813645 239813748 -42379916 + MIR SINE MIR 88 192 -70 294 197 84 0 chr1 239813758 239813829 -42379835 + LTR33 LTR ERVL 1 77 -444 204 125 0 0 chr1 239813916 239813948 -42379716 + (CA)n Simple_repeat Simple_repeat 1 32 0 579 224 109 6 chr1 239813994 239814177 -42379487 + LTR33 LTR ERVL 320 521 0 421 296 37 30 chr1 239814603 239814738 -42378926 - L2 LINE L2 0 3272 3137 318 50 0 0 chr1 239815666 239815706 -42377958 + (CA)n Simple_repeat Simple_repeat 2 41 0 493 320 116 27 chr1 239816185 239816557 -42377107 + L1MC4a LINE L1 768 1172 -5033 758 301 81 14 chr1 239816601 239816795 -42376869 + HAL1 LINE L1 1213 1393 -1114 1923 153 0 0 chr1 239816795 239817102 -42376562 + AluSx SINE Alu 1 307 -5 758 301 81 14 chr1 239817102 239817402 -42376262 + HAL1 LINE L1 1393 1740 -767 253 281 0 0 chr1 239817460 239817542 -42376122 + A-rich Low_complexity Low_complexity 1 82 0 406 279 33 38 chr1 239817827 239818024 -42375640 + L1MC4a LINE L1 2099 2255 -3960 1687 267 82 85 chr1 239818035 239818317 -42375347 + L1MC4a LINE L1 4827 5108 -1107 2339 141 29 63 chr1 239818317 239818764 -42374900 + MSTB1 LTR MaLR 1 432 0 1687 267 82 85 chr1 239818764 239819378 -42374286 + L1MC4a LINE L1 5108 5723 -492 2131 156 3 3 chr1 239819378 239819738 -42373926 - MER46B DNA MER2_type 0 236 2 1687 267 82 85 chr1 239819738 239820318 -42373346 + L1MC4a LINE L1 5723 5066 -1149 1220 35 0 0 chr1 239820318 239820462 -42373202 - L1PA5 LINE L1 -6 6148 6005 1687 267 82 85 chr1 239820462 239820774 -42372890 + L1MC4a LINE L1 5065 5377 -838 854 270 52 23 chr1 239820797 239821145 -42372519 - L1ME1 LINE L1 -4 6162 5805 * 2144 266 64 20 chr1 239821142 239821542 -42372122 - L1MEc LINE L1 -3652 2563 2182 1775 163 10 19 chr1 239821542 239821855 -42371809 - AluJo SINE Alu -2 310 1 2144 266 64 20 chr1 239821855 239822664 -42371000 - L1MEc LINE L1 -4033 2182 1338 21 0 0 0 chr1 239823433 239823454 -42370210 + AT_rich Low_complexity Low_complexity 1 21 0 201 154 0 0 chr1 239825229 239825268 -42368396 + (CAGA)n Simple_repeat Simple_repeat 3 41 0 838 265 31 0 chr1 239825930 239826126 -42367538 + MIR SINE MIR 47 248 -14 1804 96 0 0 chr1 239826752 239826992 -42366672 - AluSc SINE Alu -69 240 1 182 284 135 0 chr1 239827223 239827297 -42366367 - MIR SINE MIR -109 153 70 866 239 30 30 chr1 239827400 239827634 -42366030 + MLT1K LTR MaLR 107 340 -248 253 152 15 45 chr1 239827636 239827702 -42365962 + MLT1K LTR MaLR 460 523 -65 192 40 0 0 chr1 239828229 239828254 -42365410 + (GA)n Simple_repeat Simple_repeat 2 26 0 737 196 0 0 chr1 239828502 239828635 -42365029 - FLAM_A SINE Alu 0 133 1 1066 249 24 15 chr1 239828749 239829082 -42364582 + L1M4 LINE L1 4039 4374 -1772 28 79 0 0 chr1 239829083 239829146 -42364518 + AT_rich Low_complexity Low_complexity 1 63 0 406 296 19 0 chr1 239829153 239829261 -42364403 - MLT1K LTR MaLR -372 216 107 743 273 87 15 chr1 239829356 239829620 -42364044 - MLT1C LTR MaLR 0 467 185 228 35 0 0 chr1 239829766 239829795 -42363869 + (GA)n Simple_repeat Simple_repeat 2 30 0 434 161 0 46 chr1 239829864 239829951 -42363713 - MLT1C LTR MaLR -267 200 118 22 0 0 0 chr1 239829978 239830000 -42363664 + AT_rich Low_complexity Low_complexity 1 22 0 425 206 112 9 chr1 239830000 239830107 -42363557 - MLT1C LTR MaLR -349 118 1 222 37 0 0 chr1 239830492 239830519 -42363145 + (CA)n Simple_repeat Simple_repeat 1 27 0 292 276 26 7 chr1 239830930 239831051 -42362613 - MIR3 SINE MIR -8 200 76 209 250 18 18 chr1 239831703 239831759 -42361905 + L2 LINE L2 3211 3266 -6 403 274 117 62 chr1 239831838 239832017 -42361647 + L2 LINE L2 3124 3312 -1 * 478 246 34 8 chr1 239832001 239832119 -42361545 + MIR SINE MIR 17 137 -71 419 190 80 10 chr1 239835018 239835118 -42358546 + L1MC2 LINE L1 6238 6344 0 1751 162 16 57 chr1 239835532 239835971 -42357693 + MLT1D LTR MaLR 24 505 0 384 299 208 0 chr1 239836976 239837173 -42356491 + MIR SINE MIR 21 258 -4 687 180 22 36 chr1 239838812 239838951 -42354713 + MER5A DNA MER1_type 3 139 -50 308 159 72 43 chr1 239839622 239839691 -42353973 + MER5A DNA MER1_type 119 189 0 1042 286 58 17 chr1 239840193 239840606 -42353058 + MLT1L LTR MaLR 182 611 -4 402 331 72 0 chr1 239841734 239841900 -42351764 + MIR SINE MIR 58 235 -27 2180 207 131 106 chr1 239842675 239843307 -42350357 + MLT1E2 LTR MaLR 7 626 0 21 57 0 0 chr1 239843493 239843528 -42350136 + AT_rich Low_complexity Low_complexity 1 35 0 457 293 63 29 chr1 239843528 239843733 -42349931 + MIR SINE MIR 51 262 0 564 306 82 0 chr1 239844765 239844961 -42348703 + MIR SINE MIR 46 257 -5 3206 173 30 2 chr1 239845062 239845634 -42348030 + L1MB4 LINE L1 5576 6163 -17 734 264 111 0 chr1 239845759 239845967 -42347697 + MIR SINE MIR 13 243 -19 620 284 104 60 chr1 239846271 239846699 -42346965 + L2 LINE L2 2779 3271 -1 211 191 0 0 chr1 239847957 239847999 -42345665 + MIR SINE MIR 110 151 -111 1920 143 0 0 chr1 239848998 239849284 -42344380 - AluJb SINE Alu -13 299 14 599 256 47 31 chr1 239849368 239849559 -42344105 + MIR SINE MIR 20 213 -49 10850 176 53 28 chr1 239850692 239850877 -42342787 + Charlie5 DNA MER1_type 1 180 -2444 2323 90 0 0 chr1 239850877 239851165 -42342499 + AluY SINE Alu 10 297 -14 10850 176 53 28 chr1 239851165 239853432 -42340232 + Charlie5 DNA MER1_type 180 2522 -102 1855 132 3 64 chr1 239853432 239853759 -42339905 - AluSx SINE Alu -5 307 1 10850 176 53 28 chr1 239853759 239853852 -42339812 + Charlie5 DNA MER1_type 2522 2611 -13 1896 99 37 7 chr1 239853955 239854227 -42339437 + AluSx SINE Alu 5 284 -28 2578 65 0 0 chr1 239854337 239854647 -42339017 - AluSx SINE Alu 0 312 3 180 270 16 16 chr1 239855357 239855420 -42338244 + L2 LINE L2 3206 3268 -4 21 36 0 0 chr1 239855538 239855566 -42338098 + AT_rich Low_complexity Low_complexity 1 28 0 348 164 0 0 chr1 239857228 239857283 -42336381 + L1ME3A LINE L1 179 233 -5972 2206 253 109 62 chr1 239857550 239857739 -42335925 + HAL1 LINE L1 35 214 -2293 207 0 0 0 chr1 239857739 239857762 -42335902 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2206 253 109 62 chr1 239857762 239858729 -42334935 + HAL1 LINE L1 214 1245 -1262 845 208 160 91 chr1 239858746 239859072 -42334592 + MER57A LTR ERV1 3 360 -43 2106 97 3 45 chr1 239859072 239859381 -42334283 + AluSg SINE Alu 1 296 -14 845 208 160 91 chr1 239859381 239859429 -42334235 + MER57A LTR ERV1 360 403 0 453 249 37 32 chr1 239859714 239859903 -42333761 + HAL1 LINE L1 2198 2387 -120 203 189 0 0 chr1 239859935 239859972 -42333692 + T-rich Low_complexity Low_complexity 1 37 0 215 304 0 14 chr1 239860041 239860110 -42333554 + (TATATG)n Simple_repeat Simple_repeat 1 68 0 340 191 11 67 chr1 239860297 239860386 -42333278 + L2 LINE L2 3229 3312 -1 964 277 140 44 chr1 239860562 239861656 -42332008 + L1ME3A LINE L1 2111 3388 -2827 2059 205 26 35 chr1 239861656 239862109 -42331555 - LTR2 LTR ERV1 0 449 1 964 277 140 44 chr1 239862109 239862595 -42331069 + L1ME3A LINE L1 3388 3826 -2389 2166 134 0 0 chr1 239862595 239862893 -42330771 + AluSx SINE Alu 1 298 -14 229 284 11 11 chr1 239862910 239863005 -42330659 + L1ME3A LINE L1 3930 4024 -2191 438 261 217 16 chr1 239863011 239863195 -42330469 - MLT1J LTR MaLR 0 511 291 897 250 119 40 chr1 239863222 239863773 -42329891 + MLT1G1 LTR MaLR 1 590 0 783 255 24 28 chr1 239863774 239863986 -42329678 - MLT1J LTR MaLR -293 218 8 936 237 0 26 chr1 239864007 239864201 -42329463 + MER5A DNA MER1_type 1 189 0 1359 284 125 40 chr1 239864205 239864608 -42329056 + L1ME3A LINE L1 4084 4451 -1764 2117 117 3 0 chr1 239864608 239864898 -42328766 + AluSx SINE Alu 1 291 -21 1359 284 125 40 chr1 239864898 239865302 -42328362 + L1ME3A LINE L1 4451 4819 -1396 16793 121 15 6 chr1 239865302 239867699 -42325965 + Tigger1 DNA MER2_type 1 2418 0 1359 284 125 40 chr1 239867699 239868068 -42325596 + L1ME3A LINE L1 4819 5361 -854 254 196 0 0 chr1 239868187 239868233 -42325431 - U2 snRNA snRNA -142 46 1 1885 142 16 10 chr1 239868255 239868558 -42325106 + AluSx SINE Alu 1 305 -7 648 216 6 50 chr1 239868563 239868744 -42324920 + L1MEd LINE L1 1037 1209 -4910 652 315 80 21 chr1 239868746 239869122 -42324542 + L1ME3A LINE L1 5622 6020 -215 382 345 93 14 chr1 239869604 239869969 -42323695 + L2 LINE L2 1636 2029 -1285 736 240 53 9 chr1 239870028 239870253 -42323411 - L1M4 LINE L1 -1272 4874 4640 702 181 15 45 chr1 239870260 239870393 -42323271 - FLAM_C SINE Alu -10 133 5 441 296 93 12 chr1 239870711 239870873 -42322791 - MIR SINE MIR -78 184 10 579 167 0 0 chr1 239870947 239871031 -42322633 - AluJo SINE Alu -19 293 210 954 120 30 0 chr1 239871035 239871168 -42322496 - AluJo SINE Alu -175 137 1 32 67 0 0 chr1 239871214 239871274 -42322390 + AT_rich Low_complexity Low_complexity 1 60 0 1102 143 6 11 chr1 239871295 239871477 -42322187 - AluSq SINE Alu -3 310 130 21 71 0 0 chr1 239871477 239871519 -42322145 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr1 239871545 239871576 -42322088 + AT_rich Low_complexity Low_complexity 1 31 0 2032 234 86 22 chr1 239871581 239872127 -42321537 - MLT1G LTR MaLR 0 590 10 659 210 134 5 chr1 239872623 239872785 -42320879 + MER5A DNA MER1_type 4 189 0 274 266 114 0 chr1 239872785 239872864 -42320800 - MIR SINE MIR -91 171 84 208 339 36 27 chr1 239872866 239872978 -42320686 - MIR SINE MIR -139 123 11 300 363 29 10 chr1 239873118 239873220 -42320444 + L2 LINE L2 3137 3240 -32 423 326 15 0 chr1 239873719 239873851 -42319813 - MER94 DNA DNA 0 134 1 202 361 9 19 chr1 239873959 239874067 -42319597 + MER5A DNA MER1_type 3 109 -80 401 302 174 26 chr1 239875196 239875723 -42317941 - L2 LINE L2 0 3313 2699 1639 159 78 29 chr1 239875726 239876035 -42317629 + MER2 DNA MER2_type 22 345 0 287 330 21 0 chr1 239876042 239876139 -42317525 - L2 LINE L2 -623 2691 2593 227 297 0 0 chr1 239877429 239877493 -42316171 + A-rich Low_complexity Low_complexity 1 64 0 2309 105 0 3 chr1 239879416 239879722 -42313942 - AluSx SINE Alu -7 305 1 2144 270 71 67 chr1 239880201 239880928 -42312736 + L1M4 LINE L1 3273 3995 -2151 769 206 0 0 chr1 239880928 239881054 -42312610 + FLAM_C SINE Alu 1 126 -7 2144 270 71 67 chr1 239881054 239881992 -42311672 + L1M4 LINE L1 3995 4945 -1201 252 206 29 29 chr1 239882010 239882078 -42311586 + LTR50 LTR ERVL 3 70 -725 995 168 54 0 chr1 239882266 239882433 -42311231 - MER46A DNA MER2_type -59 177 2 436 227 54 2 chr1 239883057 239883171 -42310493 + LTR50 LTR ERVL 50 195 -364 248 216 68 40 chr1 239884101 239884175 -42309489 - MER5A DNA MER1_type 0 189 114 207 100 0 0 chr1 239885438 239885468 -42308196 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr1 239886217 239886238 -42307426 + GC_rich Low_complexity Low_complexity 1 21 0 2245 85 0 3 chr1 239887505 239887823 -42305841 + AluSc SINE Alu 1 309 0 1975 124 3 0 chr1 239890336 239890653 -42303011 - AluSp SINE Alu 0 318 1 487 333 34 34 chr1 239890854 239891061 -42302603 - L3 LINE CR1 -117 1460 1254 2312 133 14 3 chr1 239891238 239891585 -42302079 - MER46B DNA MER2_type -8 228 3 316 156 0 47 chr1 239891538 239891602 -42302062 + MER46A DNA MER2_type 97 157 -79 * 322 234 60 90 chr1 239891604 239891652 -42302012 - L3 LINE CR1 -322 1255 1207 867 217 23 42 chr1 239891652 239891780 -42301884 - MER58C DNA MER1_type -2205 215 91 2089 114 7 0 chr1 239891780 239892078 -42301586 + AluSx SINE Alu 1 300 -12 867 217 23 42 chr1 239892078 239892166 -42301498 - MER58C DNA MER1_type -2329 91 3 322 234 60 90 chr1 239892166 239892284 -42301380 - L3 LINE CR1 -370 1207 1094 552 256 135 17 chr1 239892573 239892803 -42300861 - MIR SINE MIR -4 258 2 1840 280 37 26 chr1 239895405 239895945 -42297719 - MER115 DNA AcHobo 0 693 148 825 151 0 53 chr1 239896068 239896220 -42297444 + FRAM SINE Alu 22 165 -11 304 253 134 62 chr1 239896886 239897080 -42296584 - L1ME LINE L1 -304 5817 5610 1794 118 8 4 chr1 239898872 239899134 -42294530 + AluSq SINE Alu 1 263 -50 279 0 0 0 chr1 239899146 239899177 -42294487 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 201 39 0 0 chr1 239899602 239899628 -42294036 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 346 310 176 39 chr1 239899917 239900411 -42293253 - L1ME LINE L1 -862 5284 4723 286 364 8 4 chr1 239900625 239900864 -42292800 - L1ME LINE L1 -1784 4362 4123 4400 158 65 7 chr1 239902646 239903457 -42290207 - L1MB3 LINE L1 -2 6181 5324 1870 131 0 27 chr1 239904611 239904909 -42288755 - AluSx SINE Alu -18 294 5 214 299 113 0 chr1 239904952 239905049 -42288615 - MIR SINE MIR -118 144 37 * 234 264 58 23 chr1 239905037 239905124 -42288540 - L2 LINE L2 -205 3067 2978 559 254 23 0 chr1 239905388 239905518 -42288146 + MIR SINE MIR 106 238 -24 1442 171 89 4 chr1 239905527 239905807 -42287857 - AluJb SINE Alu -6 306 3 228 232 0 18 chr1 239909146 239909202 -42284462 + C-rich Low_complexity Low_complexity 2 56 0 493 264 16 24 chr1 239912075 239912200 -42281464 - MIR3 SINE MIR -3 205 82 754 276 170 47 chr1 239912770 239913439 -42280225 - L2 LINE L2 -26 3287 2505 339 292 90 35 chr1 239913480 239913624 -42280040 - MIR SINE MIR -1 261 110 566 302 110 42 chr1 239914166 239914474 -42279190 - L2 LINE L2 0 3272 2944 1598 163 180 51 chr1 239914544 239914993 -42278671 - L1MDa LINE L1 -5229 1311 805 866 218 0 6 chr1 239914993 239915163 -42278501 - L1MDa LINE L1 -6353 187 19 2197 193 26 36 chr1 239915241 239915529 -42278135 - Charlie1b DNA MER1_type -2260 501 219 2481 58 0 3 chr1 239915529 239915837 -42277827 - AluY SINE Alu -4 307 1 2197 193 26 36 chr1 239915837 239916052 -42277612 - Charlie1b DNA MER1_type -2542 219 3 713 238 5 32 chr1 239916074 239916263 -42277401 + Charlie5 DNA MER1_type 16 199 -2413 1055 181 19 4 chr1 239916264 239916523 -42277141 + Charlie5 DNA MER1_type 2354 2616 0 553 297 86 0 chr1 239916545 239916767 -42276897 - L2 LINE L2 -499 2815 2575 2068 108 3 0 chr1 239916784 239917108 -42276556 + AluSx SINE Alu 1 325 0 555 239 0 0 chr1 239917147 239917264 -42276400 + L1MC4 LINE L1 7771 7887 -155 321 172 16 0 chr1 239917287 239917351 -42276313 - Charlie1 DNA MER1_type -2618 143 79 260 178 40 125 chr1 239917353 239917505 -42276159 + L1MC4 LINE L1 7904 8042 0 410 318 147 25 chr1 239917564 239917919 -42275745 - L2 LINE L2 -826 2488 2091 1342 207 87 126 chr1 239917922 239918393 -42275271 + MLT1F LTR MaLR 1 489 -53 1660 163 10 7 chr1 239918393 239918688 -42274976 + AluJo SINE Alu 1 296 -16 1342 207 87 126 chr1 239918688 239918718 -42274946 + MLT1F LTR MaLR 489 481 -61 3252 44 10 0 chr1 239918718 239919106 -42274558 - L1PA3 LINE L1 0 6155 5764 1342 207 87 126 chr1 239919106 239919167 -42274497 + MLT1F LTR MaLR 480 542 0 260 333 19 9 chr1 239919293 239919401 -42274263 - L2 LINE L2 -1389 1925 1817 1645 142 3 50 chr1 239919558 239919860 -42273804 + AluJo SINE Alu 7 294 -18 2529 48 0 0 chr1 239919865 239920175 -42273489 + AluY SINE Alu 1 310 -1 524 289 39 44 chr1 239920897 239921101 -42272563 + MIR SINE MIR 29 231 -31 1420 152 72 51 chr1 239921723 239922027 -42271637 + AluJo SINE Alu 1 310 0 201 330 0 34 chr1 239922111 239922199 -42271465 + MIR SINE MIR 178 262 0 216 265 0 0 chr1 239922281 239922330 -42271334 - L2 LINE L2 0 3272 3224 874 213 42 61 chr1 239922361 239922590 -42271074 - MIR SINE MIR -4 258 33 2356 62 0 3 chr1 239922590 239922894 -42270770 - AluY SINE Alu -8 303 1 874 213 42 61 chr1 239922894 239922927 -42270737 - MIR SINE MIR -229 33 1 454 203 98 16 chr1 239924366 239924489 -42269175 - MIR SINE MIR -66 196 64 193 182 0 0 chr1 239924487 239924520 -42269144 + L2 LINE L2 3271 3303 -10 * 476 230 24 85 chr1 239924937 239925102 -42268562 + MIR SINE MIR 46 200 -62 207 0 0 0 chr1 239925131 239925154 -42268510 + (GA)n Simple_repeat Simple_repeat 2 24 0 223 274 108 29 chr1 239925178 239925280 -42268384 - MIR SINE MIR -57 205 96 315 261 14 0 chr1 239925409 239925478 -42268186 - L2 LINE L2 -1 3312 3243 1516 176 21 14 chr1 239925640 239925930 -42267734 + AluJb SINE Alu 1 292 -20 189 378 43 22 chr1 239925957 239926142 -42267522 - L2 LINE L2 -410 2904 2716 944 200 56 10 chr1 239926172 239926367 -42267297 - MLT1A1 LTR MaLR 0 365 162 328 276 87 87 chr1 239926433 239926719 -42266945 - L2 LINE L2 -645 2669 2384 215 274 97 0 chr1 239930867 239930929 -42262735 - L2 LINE L2 0 3313 3246 194 295 29 86 chr1 239931250 239931355 -42262309 - L2 LINE L2 -962 2352 2254 513 47 0 0 chr1 239931596 239931660 -42262004 + (CA)n Simple_repeat Simple_repeat 2 65 0 240 254 384 7 chr1 239931764 239931902 -42261762 + MIR3 SINE MIR 15 204 -4 1033 174 60 32 chr1 239932129 239932347 -42261317 + MER58A DNA MER1_type 1 224 0 328 326 0 0 chr1 239933495 239933584 -42260080 - L2 LINE L2 -6 3266 3178 385 307 44 0 chr1 239933632 239933746 -42259918 + L2 LINE L2 3148 3266 -6 647 216 26 98 chr1 239934336 239934684 -42258980 - L1MC5 LINE L1 -30 7931 7609 222 118 0 0 chr1 239934697 239934731 -42258933 + (T)n Simple_repeat Simple_repeat 1 34 0 397 288 24 8 chr1 239935012 239935137 -42258527 - L2 LINE L2 -5 3308 3182 308 259 74 25 chr1 239936030 239936192 -42257472 - Charlie7 DNA MER1_type -1 2611 2442 2261 229 126 112 chr1 239936197 239936828 -42256836 + L2 LINE L2 1485 2106 -1207 486 184 0 20 chr1 239936828 239936926 -42256738 + L1MC5 LINE L1 7814 7909 -52 2434 58 10 3 chr1 239936929 239937237 -42256427 - AluY SINE Alu -1 310 1 2261 229 126 112 chr1 239937237 239937821 -42255843 + L2 LINE L2 2107 2682 -631 602 238 144 60 chr1 239937821 239938120 -42255544 - MER33 DNA MER1_type 0 324 1 2261 229 126 112 chr1 239938120 239938597 -42255067 + L2 LINE L2 2682 3312 -1 1893 246 91 30 chr1 239938721 239939289 -42254375 - Charlie7 DNA MER1_type -403 2209 1588 1620 169 27 7 chr1 239939289 239939584 -42254080 - AluJo SINE Alu -11 301 1 1893 246 91 30 chr1 239939584 239939721 -42253943 - Charlie7 DNA MER1_type -1024 1588 1461 693 278 124 0 chr1 239939719 239939992 -42253672 - Charlie7 DNA MER1_type -2271 341 35 * 352 231 22 44 chr1 239941066 239941157 -42252507 + L2 LINE L2 3184 3272 0 2217 104 3 3 chr1 239941497 239941823 -42251841 + AluSq SINE Alu 1 313 0 2323 66 33 33 chr1 239942486 239942790 -42250874 + AluSc SINE Alu 1 304 -5 639 161 106 6 chr1 239943267 239943428 -42250236 - MER112 DNA MER1_type -7 253 77 196 293 69 52 chr1 239944562 239944678 -42248986 - L2 LINE L2 -5 3308 3191 617 278 31 48 chr1 239945080 239945307 -42248357 - MIR SINE MIR 0 262 40 651 190 104 18 chr1 239945349 239945512 -42248152 + MER5B DNA MER1_type 1 177 -1 1001 156 13 89 chr1 239947006 239947243 -42246421 + MER20 DNA MER1_type 1 219 0 246 62 0 0 chr1 239948288 239948320 -42245344 + (TA)n Simple_repeat Simple_repeat 2 33 0 1732 165 0 46 chr1 239949494 239949821 -42243843 - AluJo SINE Alu 0 312 1 1775 209 67 35 chr1 239949834 239950327 -42243337 - L1ME3A LINE L1 -3 6167 5659 248 219 62 0 chr1 239950327 239950455 -42243209 + (CATA)n Simple_repeat Simple_repeat 2 137 0 748 265 203 5 chr1 239950469 239950839 -42242825 - L1M4 LINE L1 -476 5698 5256 759 227 160 13 chr1 239951108 239951333 -42242331 - MIR SINE MIR 0 262 5 215 288 0 38 chr1 239951354 239951434 -42242230 + L2 LINE L2 3237 3313 0 184 325 60 12 chr1 239951518 239951601 -42242063 + L2 LINE L2 3227 3313 0 202 346 12 37 chr1 239952085 239952166 -42241498 - MIR3 SINE MIR -22 186 108 192 333 10 20 chr1 239952511 239952529 -42241135 + L2 LINE L2 3209 3226 -87 2117 160 54 5 chr1 239952529 239952954 -42240710 - L1MB3 LINE L1 -1 6182 5737 192 333 10 20 chr1 239952954 239953037 -42240627 + L2 LINE L2 3226 3309 -4 823 224 103 0 chr1 239954738 239954952 -42238712 - MIR SINE MIR -8 254 19 240 111 0 0 chr1 239955552 239955597 -42238067 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 207 204 0 0 chr1 239956026 239956075 -42237589 + (TA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chr1 239956156 239956188 -42237476 + AT_rich Low_complexity Low_complexity 1 32 0 261 333 148 0 chr1 239956333 239956441 -42237223 + MIR SINE MIR 47 170 -92 * 605 234 0 8 chr1 239956423 239956547 -42237117 - L2 LINE L2 0 3313 3191 2128 82 0 0 chr1 239957288 239957571 -42236093 - AluSx SINE Alu 0 309 27 641 215 40 60 chr1 239957761 239957961 -42235703 + MIR SINE MIR 67 262 0 342 293 61 0 chr1 239957996 239958095 -42235569 + L2 LINE L2 3200 3304 -9 203 355 36 22 chr1 239958285 239958423 -42235241 - L2 LINE L2 -557 2757 2618 543 225 98 48 chr1 239959245 239959476 -42234188 - MIR SINE MIR 0 262 19 396 303 84 13 chr1 239959519 239959674 -42233990 + MIR SINE MIR 47 212 -50 400 326 99 29 chr1 239962746 239963059 -42230605 + L3 LINE CR1 1021 1355 -222 575 256 42 36 chr1 239963238 239963406 -42230258 - MIR SINE MIR -15 247 79 2118 124 0 34 chr1 239963825 239964123 -42229541 - AluSx SINE Alu -24 288 1 390 214 40 79 chr1 239966794 239966920 -42226744 + 5S rRNA rRNA 1 121 0 385 321 121 38 chr1 239966996 239967236 -42226428 - MIR SINE MIR 0 262 3 720 230 77 52 chr1 239967327 239967575 -42226089 - MIR SINE MIR -1 261 8 1310 279 50 8 chr1 239967868 239968352 -42225312 + L1M4 LINE L1 4799 5302 -844 234 287 213 22 chr1 239968779 239969009 -42224655 + L3 LINE CR1 1281 1554 -23 22 0 0 0 chr1 239969337 239969359 -42224305 + AT_rich Low_complexity Low_complexity 1 22 0 402 335 45 0 chr1 239969457 239969681 -42223983 + MER102b DNA MER1_type 106 339 -2 1264 157 87 4 chr1 239970786 239971015 -42222649 + LTR9B LTR ERV1 397 644 0 360 59 0 0 chr1 239973151 239973202 -42220462 + (GA)n Simple_repeat Simple_repeat 1 51 0 198 323 0 16 chr1 239976827 239976889 -42216775 + L2 LINE L2 3112 3172 -100 206 332 30 52 chr1 239977403 239977519 -42216145 + MIR3 SINE MIR 5 117 -105 795 75 0 0 chr1 239978859 239978966 -42214698 + (CCCCG)n Simple_repeat Simple_repeat 1 107 0 420 37 0 0 chr1 239980565 239980619 -42213045 + (TG)n Simple_repeat Simple_repeat 2 55 0 394 283 118 13 chr1 239983856 239984008 -42209656 - MIR SINE MIR -66 196 29 456 257 35 9 chr1 239984235 239984348 -42209316 - L2 LINE L2 -18 3295 3180 329 254 161 31 chr1 239985272 239985402 -42208262 + MIR3 SINE MIR 37 183 -25 41 48 0 0 chr1 239985907 239985969 -42207695 + AT_rich Low_complexity Low_complexity 1 62 0 203 281 62 52 chr1 239986367 239986463 -42207201 - MIR SINE MIR -17 245 149 205 223 132 50 chr1 239987561 239987682 -42205982 + L3b LINE CR1 1250 1380 -203 188 159 0 23 chr1 239989402 239989446 -42204218 + CT-rich Low_complexity Low_complexity 2 44 0 1025 145 25 0 chr1 239991558 239991717 -42201947 - AluSg/x SINE Alu -15 295 133 290 313 55 0 chr1 239991865 239991993 -42201671 - MIR3 SINE MIR -50 158 24 412 291 169 0 chr1 239993631 239993779 -42199885 + MIR SINE MIR 16 188 -74 2166 101 10 7 chr1 239996176 239996483 -42197181 - AluSg SINE Alu -2 308 1 307 338 8 8 chr1 239997869 239998002 -42195662 - MER5B DNA MER1_type -3 175 43 303 299 143 26 chr1 239998050 239998076 -42195588 + MER5A DNA MER1_type 16 38 -151 1968 203 91 21 chr1 239998076 239998548 -42195116 - MLT1D LTR MaLR 0 505 1 303 299 143 26 chr1 239998548 239998675 -42194989 + MER5A DNA MER1_type 38 187 -2 1661 161 3 37 chr1 239999248 239999546 -42194118 + AluJo SINE Alu 1 288 -24 2332 80 3 0 chr1 240000207 240000493 -42193171 + AluSp SINE Alu 1 287 -26 333 0 0 0 chr1 240000495 240000532 -42193132 + (TG)n Simple_repeat Simple_repeat 2 38 0 261 139 0 0 chr1 240000532 240000575 -42193089 + (TA)n Simple_repeat Simple_repeat 2 44 0 893 193 54 6 chr1 240000842 240001008 -42192656 + MER5B DNA MER1_type 5 178 0 246 308 116 34 chr1 240001262 240001408 -42192256 - L2 LINE L2 -215 3057 2900 562 211 104 9 chr1 240004232 240004493 -42189171 - MER33 DNA MER1_type -1 323 1 972 56 112 0 chr1 240004646 240004771 -42188893 - MER85 DNA T2_type 0 139 1 2077 127 23 10 chr1 240004917 240005225 -42188439 - AluSx SINE Alu 0 312 1 3202 161 47 6 chr1 240005523 240006050 -42187614 + MER44D DNA MER2_type 2 605 0 922 118 0 22 chr1 240007339 240007475 -42186189 - FLAM_C SINE Alu 0 133 1 2253 79 3 10 chr1 240008686 240008991 -42184673 - AluY SINE Alu -8 303 1 481 208 201 27 chr1 240009199 240009348 -42184316 + MER5A DNA MER1_type 14 188 -1 24 0 0 0 chr1 240009674 240009698 -42183966 + AT_rich Low_complexity Low_complexity 1 24 0 2141 116 3 3 chr1 240009854 240010164 -42183500 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr1 240011426 240011447 -42182217 + AT_rich Low_complexity Low_complexity 1 21 0 2564 110 27 21 chr1 240012234 240012607 -42181057 + THE1C LTR MaLR 1 375 0 2424 55 6 26 chr1 240014272 240014584 -42179080 + AluSg SINE Alu 1 306 -4 6035 174 36 44 chr1 240014624 240016095 -42177569 + L1MB4 LINE L1 3973 5418 -762 1769 189 77 29 chr1 240016095 240016471 -42177193 + MSTD LTR MaLR 3 396 0 6035 174 36 44 chr1 240016471 240017194 -42176470 + L1MB4 LINE L1 5418 6145 -35 7153 141 8 3 chr1 240017907 240019892 -42173772 + L1PA14 LINE L1 4121 6159 -2 366 272 94 40 chr1 240020149 240020288 -42173376 + L1ME LINE L1 5261 5416 -2392 1901 151 0 22 chr1 240020288 240020606 -42173058 + AluJb SINE Alu 1 311 -1 366 272 94 40 chr1 240020606 240020668 -42172996 + L1ME LINE L1 5416 5473 -2335 28 29 0 0 chr1 240020695 240020730 -42172934 + AT_rich Low_complexity Low_complexity 1 35 0 36176 96 17 7 chr1 240020735 240026820 -42166844 + L1PA6 LINE L1 11 6154 0 276 216 60 60 chr1 240027024 240027140 -42166524 + L1ME LINE L1 5626 5741 -380 2132 92 3 14 chr1 240027162 240027456 -42166208 + AluSx SINE Alu 5 295 -17 2119 121 0 0 chr1 240027956 240028246 -42165418 - AluSg SINE Alu -20 290 1 192 262 49 0 chr1 240028351 240028412 -42165252 - MIR3 SINE MIR -42 166 103 243 231 0 0 chr1 240028918 240028983 -42164681 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 303 309 18 48 chr1 240029042 240029207 -42164457 - MIR SINE MIR -19 243 84 1132 156 13 89 chr1 240030906 240031143 -42162521 + MER20 DNA MER1_type 1 219 0 297 75 0 0 chr1 240032188 240032228 -42161436 + (TA)n Simple_repeat Simple_repeat 2 41 0 1671 166 0 30 chr1 240033428 240033730 -42159934 - AluJo SINE Alu -19 293 1 1915 202 65 34 chr1 240033743 240034237 -42159427 - L1ME3A LINE L1 -3 6167 5659 204 214 61 0 chr1 240034237 240034335 -42159329 + (CATA)n Simple_repeat Simple_repeat 2 105 0 944 247 202 6 chr1 240034337 240034689 -42158975 - L1ME3A LINE L1 -494 5676 5256 804 221 162 0 chr1 240034979 240035183 -42158481 - MIR SINE MIR -21 241 5 230 263 12 50 chr1 240035204 240035284 -42158380 + L2 LINE L2 3237 3313 0 186 314 43 14 chr1 240035381 240035451 -42158213 + L2 LINE L2 3242 3313 0 209 346 12 37 chr1 240035935 240036016 -42157648 - MIR3 SINE MIR -22 186 108 198 333 10 20 chr1 240036361 240036379 -42157285 + L2 LINE L2 3209 3226 -87 2359 160 54 5 chr1 240036379 240036804 -42156860 - L1MB3 LINE L1 -1 6182 5737 198 333 10 20 chr1 240036804 240036887 -42156777 + L2 LINE L2 3226 3309 -4 864 224 103 0 chr1 240038588 240038802 -42154862 - MIR SINE MIR -8 254 19 369 58 0 0 chr1 240039404 240039456 -42154208 + (TA)n Simple_repeat Simple_repeat 2 53 0 207 204 0 0 chr1 240039877 240039926 -42153738 + (TA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chr1 240040007 240040039 -42153625 + AT_rich Low_complexity Low_complexity 1 32 0 288 336 138 1 chr1 240040176 240040292 -42153372 + MIR SINE MIR 41 170 -92 * 626 234 0 8 chr1 240040274 240040398 -42153266 - L2 LINE L2 0 3313 3191 2086 82 0 0 chr1 240041139 240041416 -42152248 - AluSx SINE Alu 0 303 27 670 215 40 60 chr1 240041606 240041806 -42151858 + MIR SINE MIR 67 262 0 361 293 61 0 chr1 240041841 240041940 -42151724 + L2 LINE L2 3200 3304 -9 198 355 36 22 chr1 240042130 240042268 -42151396 - L2 LINE L2 -557 2757 2618 604 270 59 31 chr1 240043053 240043362 -42150302 - L1M4 LINE L1 -4554 2021 1388 * 2832 216 58 30 chr1 240043352 240044064 -42149600 - L1ME1 LINE L1 -5 6095 5364 * 3079 204 31 96 chr1 240044052 240045050 -42148614 - L1ME1 LINE L1 -1925 4155 3223 2014 224 61 10 chr1 240047103 240047691 -42145973 - L1ME1 LINE L1 -2846 3234 2617 373 279 22 67 chr1 240047706 240047885 -42145779 - L1ME1 LINE L1 -5888 182 12 283 79 0 0 chr1 240048317 240048355 -42145309 - HUERS-P3 LTR ERV1 -7017 1902 1865 * 5969 141 5 11 chr1 240048354 240049243 -42144421 - HUERS-P3 LTR ERV1 -5786 1632 750 834 109 109 7 chr1 240049256 240049393 -42144271 - HUERS-P3 LTR ERV1 -6859 559 409 485 165 41 52 chr1 240049396 240049493 -42144171 - HUERS-P3 LTR ERV1 -7322 96 1 4029 133 32 13 chr1 240049493 240049517 -42144147 - LTR9B LTR ERV1 0 644 622 6275 61 33 13 chr1 240049517 240050282 -42143382 + LTR17 LTR ERV1 1 780 0 4029 133 32 13 chr1 240050282 240050889 -42142775 - LTR9B LTR ERV1 -22 622 1 443 153 82 0 chr1 240051049 240051134 -42142530 + AluJb SINE Alu 211 302 -10 8469 53 113 6 chr1 240051357 240052498 -42141166 - L1P LINE L1 -4881 1265 3 905 194 110 121 chr1 240052704 240052989 -42140675 + MLT1A1 LTR MaLR 5 287 -78 795 180 0 0 chr1 240052989 240053111 -42140553 - FLAM_A SINE Alu -11 122 1 905 194 110 121 chr1 240053111 240053190 -42140474 + MLT1A1 LTR MaLR 287 365 0 606 241 95 66 chr1 240053330 240053604 -42140060 - L2 LINE L2 0 3313 3032 2188 109 3 3 chr1 240053685 240053996 -42139668 - AluSq SINE Alu -2 311 1 2559 182 76 109 chr1 240054535 240055287 -42138377 + LTR8A LTR ERV1 1 727 0 22 0 0 0 chr1 240055935 240055957 -42137707 + AT_rich Low_complexity Low_complexity 1 22 0 2418 47 10 7 chr1 240055963 240056259 -42137405 + AluY SINE Alu 1 297 -14 2193 110 3 7 chr1 240056662 240056962 -42136702 - AluSg SINE Alu -11 299 1 2011 123 10 0 chr1 240057155 240057447 -42136217 + AluSx SINE Alu 1 295 -17 243 61 0 0 chr1 240057781 240057814 -42135850 + (TG)n Simple_repeat Simple_repeat 2 34 0 1924 150 0 3 chr1 240057814 240058100 -42135564 - AluSx SINE Alu -27 285 1 22 0 0 0 chr1 240058117 240058139 -42135525 + AT_rich Low_complexity Low_complexity 1 22 0 385 266 91 28 chr1 240058809 240058952 -42134712 + MIR SINE MIR 20 171 -91 2091 99 25 0 chr1 240059599 240059881 -42133783 - AluSc SINE Alu -12 297 9 368 331 145 19 chr1 240060021 240060338 -42133326 - L1ME4a LINE L1 -266 5855 5499 5809 23 5 0 chr1 240060409 240061170 -42132494 + L1P1 LINE L1 4717 5481 -674 34742 30 1 0 chr1 240061270 240066158 -42127506 + L1PA2 LINE L1 1263 6151 -4 589 229 69 34 chr1 240067421 240067596 -42126068 + MIR SINE MIR 12 192 -70 240 35 0 0 chr1 240067605 240067634 -42126030 + (TG)n Simple_repeat Simple_repeat 2 30 0 1654 184 11 3 chr1 240067634 240067916 -42125748 - AluJb SINE Alu -28 284 1 4677 12 0 4 chr1 240068081 240068586 -42125078 - L1PA2 LINE L1 -1 6154 5652 1886 130 4 7 chr1 240068644 240068921 -42124743 + AluSx SINE Alu 14 289 -23 21 0 0 0 chr1 240070152 240070173 -42123491 + AT_rich Low_complexity Low_complexity 1 21 0 252 241 24 150 chr1 240071070 240071277 -42122387 + L2 LINE L2 3106 3286 -27 1720 168 49 0 chr1 240071359 240071644 -42122020 + AluJo SINE Alu 1 299 -13 815 178 29 54 chr1 240072342 240072425 -42121239 + Charlie1 DNA MER1_type 2526 2610 -151 1344 193 133 0 chr1 240072425 240072689 -42120975 + AluJo SINE Alu 1 299 -3 815 178 29 54 chr1 240072689 240072847 -42120817 + Charlie1 DNA MER1_type 2610 2761 0 540 289 86 5 chr1 240073303 240073490 -42120174 + MIR SINE MIR 21 222 -40 1485 226 90 29 chr1 240073935 240074347 -42119317 + MSTB2 LTR MaLR 1 437 -20 265 310 92 73 chr1 240076315 240076576 -42117088 + L2 LINE L2 2828 3093 -179 852 192 36 73 chr1 240077431 240077692 -42115972 - AluJb SINE Alu 0 338 86 323 287 52 22 chr1 240078222 240078358 -42115306 - L2 LINE L2 -248 3065 2926 251 208 208 13 chr1 240078524 240078601 -42115063 - L2 LINE L2 -9 3304 3213 1958 155 7 3 chr1 240078906 240079215 -42114449 - AluJb SINE Alu -2 310 1 21 36 0 0 chr1 240082922 240082950 -42110714 + AT_rich Low_complexity Low_complexity 1 28 0 4361 129 17 3 chr1 240084148 240084783 -42108881 - LTR9B LTR ERV1 0 644 1 19189 104 13 18 chr1 240084793 240087503 -42106161 - HUERS-P3b LTR ERV1 -9 7409 4713 1054 77 0 0 chr1 240087494 240087624 -42106040 - HUERS-P3b LTR ERV1 -3544 3874 3745 * 232 169 17 17 chr1 240087666 240087725 -42105939 + CT-rich Low_complexity Low_complexity 3 61 0 209 196 18 36 chr1 240087942 240087998 -42105666 + GA-rich Low_complexity Low_complexity 1 55 0 2179 105 24 0 chr1 240088782 240089078 -42104586 + AluY SINE Alu 1 303 -8 335 248 146 29 chr1 240089269 240089406 -42104258 + L1ME4a LINE L1 5930 6082 -39 253 197 140 9 chr1 240290586 240290685 -41902979 - MIR SINE MIR -63 145 35 259 295 215 12 chr1 240290827 240291037 -41902627 + MIR SINE MIR 4 251 -11 238 247 0 78 chr1 240291709 240291786 -41901878 + MIR SINE MIR 80 150 -112 780 299 93 12 chr1 240292300 240292634 -41901030 + MLT2B2 LTR ERVL 91 451 -64 668 111 32 0 chr1 240292634 240292760 -41900904 + (CA)n Simple_repeat Simple_repeat 2 131 0 307 125 0 0 chr1 240292760 240292808 -41900856 + MLT2D LTR ERVL 367 414 0 487 244 66 3 chr1 240294232 240294387 -41899277 + MIR SINE MIR 1 164 -62 718 279 46 80 chr1 240294497 240294848 -41898816 - L2 LINE L2 -1437 1877 1539 25 0 0 0 chr1 240295365 240295390 -41898274 + AT_rich Low_complexity Low_complexity 1 25 0 2403 86 33 78 chr1 240295390 240295529 -41898135 - L1PB1 LINE L1 -1 6150 6006 2275 108 0 3 chr1 240295529 240295836 -41897828 - AluSc SINE Alu -3 306 1 2403 86 33 78 chr1 240295836 240296117 -41897547 - L1PB1 LINE L1 -145 6006 5749 238 254 0 0 chr1 240296147 240296206 -41897458 + (TG)n Simple_repeat Simple_repeat 2 60 0 465 201 92 6 chr1 240296213 240296387 -41897277 - Charlie4 DNA MER1_type -24 1937 1749 6421 174 20 1 chr1 240296491 240297540 -41896124 - MER52-int LTR ERV1 -3713 3378 2310 259 311 111 0 chr1 240297660 240297750 -41895914 - LTR16C LTR ERVL -235 256 157 2607 108 6 0 chr1 240297827 240298189 -41895475 - THE1B LTR MaLR 0 364 1 260 309 12 12 chr1 240298308 240298389 -41895275 - L2 LINE L2 -4 3309 3229 458 151 76 8 chr1 240298785 240298893 -41894771 + MER61E LTR ERV1 3 85 -484 585 214 175 43 chr1 240299076 240299142 -41894522 + LTR25 LTR ERV1 415 471 -802 2414 80 0 0 chr1 240299142 240299444 -41894220 - AluY SINE Alu -9 302 1 585 214 175 43 chr1 240299444 240299709 -41893955 + LTR25 LTR ERV1 471 1232 -41 455 244 38 19 chr1 240300627 240300787 -41892877 + MIR3 SINE MIR 40 202 -6 194 253 54 102 chr1 240301365 240301551 -41892113 - L2 LINE L2 -203 3069 2893 1524 234 111 28 chr1 240302582 240303006 -41890658 + MLT1C LTR MaLR 8 466 -1 1199 49 0 0 chr1 240303388 240303531 -41890133 - L1P3 LINE L1 -503 5651 5509 576 224 66 36 chr1 240303907 240304103 -41889561 + MER3 DNA MER1_type 7 208 -1 1728 165 44 3 chr1 240304939 240305260 -41888404 + MER47A DNA MER2_type 1 334 -32 402 253 0 0 chr1 240305619 240305702 -41887962 - MLT1H1 LTR MaLR -467 88 6 767 299 40 68 chr1 240305878 240306349 -41887315 - LTR16B LTR ERVL -2 462 5 627 283 40 31 chr1 240306691 240306930 -41886734 - L1ME LINE L1 -463 5707 5463 182 31 0 62 chr1 240306930 240306962 -41886702 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 627 283 40 31 chr1 240306962 240307075 -41886589 - L1ME LINE L1 -707 5463 5352 1178 181 0 0 chr1 240307086 240307290 -41886374 - MER2 DNA MER2_type -135 210 7 683 278 105 21 chr1 240307356 240307737 -41885927 + L1ME3A LINE L1 5743 6155 -15 1004 236 109 39 chr1 240308062 240308216 -41885448 + MLT1A1 LTR MaLR 1 143 -222 237 33 0 0 chr1 240308216 240308246 -41885418 + (TC)n Simple_repeat Simple_repeat 2 31 0 1004 236 109 39 chr1 240308246 240308421 -41885243 + MLT1A1 LTR MaLR 143 353 -12 546 231 50 25 chr1 240308584 240308744 -41884920 - MLT1L LTR MaLR -331 284 121 1780 252 65 37 chr1 240308862 240309692 -41883972 - L1MEc LINE L1 -3012 3370 2518 274 279 85 48 chr1 240309857 240310154 -41883510 - L1MEc LINE L1 -4825 1557 1295 390 280 37 37 chr1 240310357 240310546 -41883118 - L1M4 LINE L1 -2392 3754 3566 1402 197 59 36 chr1 240310553 240310909 -41882755 - MER31B LTR ERV1 -62 404 41 431 306 136 57 chr1 240310964 240311050 -41882614 - L1MEc LINE L1 -5697 866 788 1758 156 3 11 chr1 240311050 240311332 -41882332 - AluSx SINE Alu -32 280 1 431 306 136 57 chr1 240311332 240311663 -41882001 - L1MEc LINE L1 -5775 788 416 380 302 75 12 chr1 240312857 240313042 -41880622 - MIR SINE MIR -19 243 45 574 291 52 28 chr1 240313393 240313461 -41880203 - L1M4 LINE L1 -1399 4747 4682 1899 142 44 0 chr1 240313461 240313757 -41879907 + AluSx SINE Alu 1 309 -3 574 291 52 28 chr1 240313757 240314110 -41879554 - L1M4 LINE L1 -1464 4682 4316 26 0 0 0 chr1 240314113 240314139 -41879525 + AT_rich Low_complexity Low_complexity 1 26 0 227 281 61 9 chr1 240314313 240314427 -41879237 - L1M4 LINE L1 -1817 4329 4210 994 263 67 16 chr1 240314430 240314907 -41878757 - L1M4 LINE L1 -1999 4147 3634 6272 89 3 29 chr1 240315028 240315964 -41877700 - L1P LINE L1 -3011 3135 2224 6906 69 3 0 chr1 240315965 240317596 -41876068 + L1PA7 LINE L1 4518 6151 -3 5741 80 3 0 chr1 240317596 240318374 -41875290 + L1PA8A LINE L1 5322 6101 -30 187 332 119 42 chr1 240318830 240319140 -41874524 - L2 LINE L2 -113 3200 2867 300 249 163 36 chr1 240319359 240319636 -41874028 + Charlie7 DNA MER1_type 338 649 -1963 1871 189 51 29 chr1 240319750 240320199 -41873465 + LOR1b LTR ERV1 3 461 0 24 67 0 0 chr1 240321155 240321200 -41872464 + AT_rich Low_complexity Low_complexity 1 45 0 1271 179 4 60 chr1 240321558 240321809 -41871855 + AluSx SINE Alu 1 237 -75 1106 187 95 14 chr1 240322010 240322304 -41871360 + MER33 DNA MER1_type 3 320 -4 519 248 68 12 chr1 240322784 240322945 -41870719 + Charlie1b DNA MER1_type 44 213 -310 1120 224 5 5 chr1 240322945 240323164 -41870500 + AluJo SINE Alu 39 257 -55 832 156 94 23 chr1 240323195 240323451 -41870213 + Charlie1b DNA MER1_type 235 508 -15 1815 157 4 0 chr1 240323780 240324091 -41869573 + AluSx SINE Alu 1 312 0 1087 215 14 58 chr1 240325128 240325421 -41868243 + LTR4 LTR ERV1 317 596 0 1733 177 3 24 chr1 240325708 240326047 -41867617 - L1M2 LINE L1 -537 5775 5444 695 206 12 29 chr1 240326043 240326213 -41867451 + L1MA9 LINE L1 5912 6078 -234 * 1516 180 50 41 chr1 240326249 240326611 -41867053 + THE1C LTR MaLR 11 375 0 9072 143 7 50 chr1 240326613 240328260 -41865404 + THE1C-int LTR MaLR 3 1579 -1 936 162 139 0 chr1 240328261 240328434 -41865230 + THE1C LTR MaLR 1 197 -231 1040 121 7 0 chr1 240328436 240328577 -41865087 + AluY SINE Alu 3 144 -167 1981 106 4 4 chr1 240328858 240329142 -41864522 + AluSc SINE Alu 17 300 0 808 153 101 42 chr1 240329146 240329162 -41864502 + THE1C LTR MaLR 176 190 -185 189 0 0 0 chr1 240329162 240329183 -41864481 + (TC)n Simple_repeat Simple_repeat 1 21 0 808 153 101 42 chr1 240329183 240329355 -41864309 + THE1C LTR MaLR 190 375 0 839 204 11 0 chr1 240329363 240329544 -41864120 + L1MA9 LINE L1 6083 6265 -47 21 0 0 0 chr1 240329860 240329881 -41863783 + AT_rich Low_complexity Low_complexity 1 21 0 2248 71 0 0 chr1 240330307 240330622 -41863042 + AluY SINE Alu 17 331 0 26 50 0 0 chr1 240333575 240333615 -41860049 + AT_rich Low_complexity Low_complexity 1 40 0 2240 112 0 0 chr1 240333620 240333930 -41859734 + AluSx SINE Alu 1 310 0 2103 99 7 3 chr1 240334109 240334391 -41859273 + AluSq SINE Alu 6 288 -25 1702 228 117 13 chr1 240334501 240334971 -41858693 + MER101B LTR ERV1 1 519 -51 323 348 13 52 chr1 240335199 240335432 -41858232 - L1M4 LINE L1 -1018 5128 4905 315 0 0 0 chr1 240336428 240336463 -41857201 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr1 240337177 240337206 -41856458 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 240337541 240337563 -41856101 + AT_rich Low_complexity Low_complexity 1 22 0 2264 260 80 31 chr1 240337795 240339376 -41854288 + L1MCb LINE L1 844 2599 -3965 2012 125 7 3 chr1 240339459 240339754 -41853910 + AluSc SINE Alu 1 296 -13 1943 242 33 23 chr1 240339777 240340439 -41853225 + L1M4 LINE L1 4661 5329 -817 411 265 61 7 chr1 240340547 240340694 -41852970 + L2 LINE L2 2158 2312 -1002 193 296 70 0 chr1 240341674 240341745 -41851919 + L2 LINE L2 3234 3309 -4 4274 172 74 14 chr1 240342135 240342983 -41850681 + MER54A LTR ERVL 3 901 0 211 354 52 10 chr1 240343088 240343184 -41850480 - L2 LINE L2 -1 3271 3172 610 314 40 37 chr1 240343740 240344116 -41849548 + L1ME LINE L1 521 897 -5173 409 372 62 36 chr1 240344126 240344513 -41849151 + L1MEc LINE L1 37 433 -5963 554 261 63 14 chr1 240344771 240345055 -41848609 + L1MEc LINE L1 679 976 -5420 645 164 20 82 chr1 240345325 240345427 -41848237 + L1MA4A LINE L1 5506 5598 -702 2093 126 0 0 chr1 240345427 240345720 -41847944 + AluY SINE Alu 4 296 -15 645 164 20 82 chr1 240345720 240345763 -41847901 + L1MA4A LINE L1 5598 5642 -658 568 245 0 14 chr1 240345763 240345902 -41847762 - FLAM_A SINE Alu -4 138 2 3813 125 3 53 chr1 240345902 240346416 -41847248 + L1MA4A LINE L1 5632 6170 -133 201 39 0 0 chr1 240346416 240346442 -41847222 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2141 121 0 0 chr1 240346442 240346724 -41846940 - AluSc SINE Alu -27 282 1 3813 125 3 53 chr1 240346724 240346903 -41846761 + L1MA4A LINE L1 6168 6291 -12 460 132 33 0 chr1 240346903 240346994 -41846670 + GA-rich Low_complexity Low_complexity 4 97 0 200 273 0 0 chr1 240347555 240347599 -41846065 + GA-rich Low_complexity Low_complexity 3 46 0 2239 77 3 0 chr1 240347740 240348026 -41845638 + AluY SINE Alu 1 287 -24 329 307 86 32 chr1 240348719 240349243 -41844421 + L1MC/D LINE L1 4686 5237 -909 363 271 99 41 chr1 240349290 240349519 -41844145 + L1MC/D LINE L1 5291 5520 -642 2742 50 0 121 chr1 240349916 240350354 -41843310 - L1PA7 LINE L1 -3 6151 5767 1906 147 10 13 chr1 240350546 240350859 -41842805 + AluSx SINE Alu 1 312 0 28 86 0 0 chr1 240350898 240350968 -41842696 + AT_rich Low_complexity Low_complexity 1 70 0 2459 66 0 0 chr1 240351241 240351545 -41842119 - AluY SINE Alu -7 304 1 230 219 0 0 chr1 240352127 240352168 -41841496 - MER9 LTR ERVK -83 428 388 421 264 28 14 chr1 240352303 240352447 -41841217 + L1ME1 LINE L1 4168 4313 -1833 2448 212 28 10 chr1 240352448 240352953 -41840711 + MLT2B2 LTR ERVL 2 515 0 2231 247 72 39 chr1 240352953 240353333 -41840331 + L1ME1 LINE L1 4310 4676 -1490 2274 98 7 0 chr1 240353333 240353638 -41840026 + AluSx SINE Alu 1 307 -5 2231 247 72 39 chr1 240353638 240355053 -41838611 + L1ME1 LINE L1 4676 6161 -5 2454 272 68 25 chr1 240355178 240356448 -41837216 + L1M4 LINE L1 2596 3919 -2227 600 314 10 29 chr1 240356548 240356752 -41836912 - L2 LINE L2 -405 2909 2710 337 353 122 23 chr1 240357354 240357575 -41836089 - L2 LINE L2 -622 2692 2450 474 281 148 24 chr1 240358803 240358978 -41834686 + L1ME1 LINE L1 1126 1278 -5145 207 0 0 0 chr1 240358978 240359001 -41834663 + (CA)n Simple_repeat Simple_repeat 2 24 0 474 281 148 24 chr1 240359001 240359163 -41834501 + L1ME1 LINE L1 1278 1505 -4918 513 241 93 34 chr1 240359302 240359674 -41833990 + L1ME1 LINE L1 2957 3389 -3552 339 191 143 19 chr1 240359832 240359937 -41833727 - L1ME4a LINE L1 0 6121 6004 3662 166 16 8 chr1 240359942 240360562 -41833102 + L1M3f LINE L1 6 630 -4698 3405 171 33 23 chr1 240360566 240361908 -41831756 - L1MA4 LINE L1 -157 6143 4612 1487 208 19 7 chr1 240361908 240362287 -41831377 + LTR47A LTR ERVL 1 452 0 1711 172 9 0 chr1 240362287 240362636 -41831028 - L1MA4 LINE L1 -1530 4616 4265 2265 82 3 0 chr1 240362809 240363112 -41830552 + AluSg SINE Alu 1 304 0 3688 205 77 8 chr1 240364830 240365624 -41828040 - MER21B LTR ERV1 -14 849 1 195 42 0 0 chr1 240365917 240365941 -41827723 + (A)n Simple_repeat Simple_repeat 1 24 0 834 356 42 69 chr1 240366274 240367012 -41826652 + L1ME1 LINE L1 3949 4666 -2275 1899 253 44 32 chr1 240367013 240368014 -41825650 + L1ME1 LINE L1 5426 6436 -525 1059 273 18 9 chr1 240368015 240368345 -41825319 + L1ME1 LINE L1 6583 6915 -46 211 194 0 0 chr1 240368701 240368737 -41824927 + L2 LINE L2 3236 3271 -1 1493 299 67 21 chr1 240368912 240369587 -41824077 + MER20B DNA MER1_type 26 731 -52 290 215 38 25 chr1 240370193 240370272 -41823392 - Tigger5 DNA MER2_type -1 2322 2243 * 448 176 0 0 chr1 240370268 240370342 -41823322 + Tigger5 DNA MER2_type 2247 2320 -3 316 254 14 0 chr1 240370342 240370412 -41823252 - Tigger5 DNA MER2_type -2245 78 8 572 360 97 22 chr1 240370441 240370600 -41823064 - L2 LINE L2 -41 3272 3126 1319 244 14 0 chr1 240370600 240370891 -41822773 + AluJo SINE Alu 1 295 -17 572 360 97 22 chr1 240370891 240371145 -41822519 - L2 LINE L2 -187 3126 2828 371 310 102 20 chr1 240372612 240372809 -41820855 + MLT1L LTR MaLR 183 395 -220 27 49 0 0 chr1 240372995 240373036 -41820628 + AT_rich Low_complexity Low_complexity 1 41 0 311 339 74 0 chr1 240373219 240373340 -41820324 + L2 LINE L2 3137 3266 -6 2398 108 0 0 chr1 240373520 240373827 -41819837 + AluSc SINE Alu 1 307 -2 30 0 0 0 chr1 240375009 240375039 -41818625 + AT_rich Low_complexity Low_complexity 1 30 0 519 211 86 23 chr1 240375668 240375796 -41817868 - AluJb SINE Alu -174 138 3 3714 189 1 1 chr1 240375848 240376503 -41817161 + Tigger1 DNA MER2_type 7 661 -1757 1291 205 25 31 chr1 240376642 240376998 -41816666 + LTR10B LTR ERV1 157 547 0 * 2436 126 57 12 chr1 240376998 240377419 -41816245 + Tigger1 DNA MER2_type 660 1099 -1319 7644 138 7 3 chr1 240377457 240378642 -41815022 + HERVK LTR ERVK 6053 7241 -2 4067 192 22 47 chr1 240378644 240379638 -41814026 + LTR5 LTR ERVK 1 969 0 8058 135 14 12 chr1 240379641 240380938 -41812726 + Tigger1 DNA MER2_type 1101 2402 -16 2088 140 33 33 chr1 240380938 240381302 -41812362 + THE1B LTR MaLR 1 364 0 8058 135 14 12 chr1 240381302 240381320 -41812344 + Tigger1 DNA MER2_type 2402 2418 0 241 182 0 0 chr1 240381941 240381985 -41811679 - L1P3 LINE L1 -4017 2444 2401 6785 191 18 26 chr1 240381987 240384133 -41809531 - L1P3 LINE L1 -4276 2185 2 355 267 43 126 chr1 240384176 240384550 -41809114 + L1MC4a LINE L1 3877 4219 -1927 574 164 19 0 chr1 240384560 240384664 -41809000 - FLAM_A SINE Alu -8 134 29 542 340 47 26 chr1 240384684 240385113 -41808551 + L1MC4a LINE L1 4211 4648 -1498 538 251 207 43 chr1 240385330 240385793 -41807871 + L1MC4a LINE L1 5353 5891 -1917 487 296 54 41 chr1 240387923 240388217 -41805447 + MLT1J1 LTR MaLR 3 300 -146 21 0 0 0 chr1 240389077 240389098 -41804566 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chr1 240389198 240389228 -41804436 + (CA)n Simple_repeat Simple_repeat 1 30 0 8878 134 16 8 chr1 240389352 240390835 -41802829 + L1P LINE L1 3839 5332 -814 * 9372 91 8 2 chr1 240390825 240392173 -41801491 - L1P LINE L1 -1669 4477 3122 432 224 24 82 chr1 240392294 240392464 -41801200 - Charlie7 DNA MER1_type -2410 202 43 389 191 35 35 chr1 240392491 240392606 -41801058 + L1MA7 LINE L1 6177 6291 0 1602 206 7 0 chr1 240392908 240393195 -41800469 + AluJb SINE Alu 1 289 -23 2277 114 0 0 chr1 240393220 240393519 -41800145 + AluSx SINE Alu 1 299 -13 230 0 0 32 chr1 240393523 240393554 -41800110 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 240395238 240395260 -41798404 + AT_rich Low_complexity Low_complexity 1 22 0 425 271 8 8 chr1 240395566 240395684 -41797980 + MLT2E LTR ERVL 38 155 -473 1992 156 78 22 chr1 240395744 240396298 -41797366 - MER51B LTR ERV1 -3 374 1 581 261 35 110 chr1 240396307 240396652 -41797012 + MLT2F LTR ERVL 253 571 -92 306 239 88 26 chr1 240396672 240396785 -41796879 + MLT2E LTR ERVL 470 589 -39 3655 199 94 9 chr1 240397131 240397925 -41795739 + MER6 DNA MER2_type 1 862 -3 226 273 45 23 chr1 240398199 240398287 -41795377 - MIR SINE MIR -56 206 117 22 56 0 0 chr1 240398450 240398486 -41795178 + AT_rich Low_complexity Low_complexity 1 36 0 1733 198 110 117 chr1 240398595 240399460 -41794204 - LTR28 LTR ERV1 0 1020 17 432 0 0 0 chr1 240399751 240399799 -41793865 + (TA)n Simple_repeat Simple_repeat 2 49 0 357 43 0 0 chr1 240400423 240400470 -41793194 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 266 277 0 chr1 240401226 240401414 -41792250 - L2 LINE L2 -1212 2102 1863 365 270 0 36 chr1 240401439 240401550 -41792114 + MIR SINE MIR 141 247 -15 23 33 0 0 chr1 240402456 240402486 -41791178 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1 240402552 240402581 -41791083 + AT_rich Low_complexity Low_complexity 1 29 0 299 44 22 0 chr1 240402794 240402839 -41790825 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2556 51 0 10 chr1 240403539 240403851 -41789813 - AluY SINE Alu -2 309 1 23 0 0 0 chr1 240404225 240404248 -41789416 + AT_rich Low_complexity Low_complexity 1 23 0 7657 198 13 17 chr1 240404420 240407143 -41786521 - L1PB3 LINE L1 0 6154 3444 6159 185 10 3 chr1 240407243 240408357 -41785307 - Tigger2 DNA MER2_type -1153 1565 444 880 247 21 89 chr1 240408362 240409260 -41784404 + MER52A LTR ERV1 264 1752 -3 1905 114 0 65 chr1 240409262 240409568 -41784096 + AluSg1 SINE Alu 1 286 -23 216 0 0 0 chr1 240409571 240409595 -41784069 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4487 164 60 16 chr1 240409608 240410459 -41783205 + HUERS-P2 LTR ERV1 1 888 -6203 3906 187 32 36 chr1 240410480 240410779 -41782885 + HUERS-P2 LTR ERV1 1003 1302 -1973 2020 118 86 18 chr1 240410779 240411118 -41782546 + THE1B LTR MaLR 1 362 -2 3906 187 32 36 chr1 240411118 240411877 -41781787 + HUERS-P2 LTR ERV1 1302 2277 -998 439 332 25 21 chr1 240412846 240413171 -41780493 - L1MEc LINE L1 -4758 1638 1313 2504 100 0 3 chr1 240413430 240413791 -41779873 - L1PB1 LINE L1 -1 6150 5791 461 149 17 40 chr1 240413811 240413985 -41779679 + (TA)n Simple_repeat Simple_repeat 1 170 0 3900 92 7 5 chr1 240413985 240414612 -41779052 - L1PB1 LINE L1 -360 5791 5165 3140 204 64 35 chr1 240414612 240415493 -41778171 + L1PB1 LINE L1 4249 5154 -992 508 342 122 33 chr1 240415542 240416001 -41777663 - L1MEc LINE L1 -5189 1016 517 245 315 11 0 chr1 240416261 240416353 -41777311 - L1MEc LINE L1 -5966 239 147 24 32 0 0 chr1 240416435 240416466 -41777198 + AT_rich Low_complexity Low_complexity 1 31 0 477 202 11 0 chr1 240416515 240416609 -41777055 + MSTC LTR MaLR 1 95 -333 310 310 53 49 chr1 240416943 240417134 -41776530 - MLT1J LTR MaLR -261 250 56 3821 71 8 2 chr1 240417134 240417666 -41775998 + L1PA8 LINE L1 5651 6172 0 310 310 53 49 chr1 240417666 240417700 -41775964 - MLT1J LTR MaLR -455 56 24 413 271 10 0 chr1 240418075 240418171 -41775493 - L2 LINE L2 -17 3296 3200 421 366 6 6 chr1 240419677 240419841 -41773823 - L2 LINE L2 -949 2365 2202 368 303 79 84 chr1 240419896 240420299 -41773365 + HAL1 LINE L1 1 401 -2106 2361 87 3 7 chr1 240420628 240420937 -41772727 - AluSq SINE Alu -1 312 5 6209 92 11 0 chr1 240421231 240422338 -41771326 - L1PA10 LINE L1 0 6168 5040 915 148 6 50 chr1 240422371 240422553 -41771111 - MER50 LTR ERV1 -64 670 497 2255 142 0 3 chr1 240422554 240422935 -41770729 - L1PA10 LINE L1 -1089 5057 4678 4823 131 16 0 chr1 240422936 240423706 -41769958 + L1PA10 LINE L1 3885 4666 -1480 225 0 0 0 chr1 240423919 240423944 -41769720 + (CA)n Simple_repeat Simple_repeat 2 26 0 321 338 66 7 chr1 240423954 240424105 -41769559 + HAL1 LINE L1 740 899 -1608 269 307 0 0 chr1 240424109 240424184 -41769480 + GA-rich Low_complexity Low_complexity 3 77 0 252 286 75 30 chr1 240424230 240424363 -41769301 - L2 LINE L2 -1150 2164 2026 452 276 115 10 chr1 240424370 240424562 -41769102 + MLT1J2 LTR MaLR 2 213 -237 442 296 44 13 chr1 240424605 240424764 -41768900 + MLT1J1 LTR MaLR 283 446 0 2381 95 0 0 chr1 240425655 240425961 -41767703 + AluSc SINE Alu 1 306 -3 1793 291 52 7 chr1 240426233 240426804 -41766860 - L2 LINE L2 -493 2821 2225 315 370 19 0 chr1 240428046 240428208 -41765456 - Charlie8 DNA MER1_type -1489 928 764 294 29 0 0 chr1 240428253 240428288 -41765376 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 646 75 11 0 chr1 240428297 240428391 -41765273 + AluY SINE Alu 215 309 -2 21 0 0 0 chr1 240428546 240428567 -41765097 + AT_rich Low_complexity Low_complexity 1 21 0 2054 129 0 11 chr1 240429446 240429758 -41763906 - AluSp SINE Alu 0 309 1 786 306 57 32 chr1 240430256 240430658 -41763006 - LTR16A LTR ERVL -18 432 21 197 266 16 16 chr1 240431860 240431924 -41761740 + MIR3 SINE MIR 134 197 -11 338 343 69 71 chr1 240431939 240432092 -41761572 + L1MEd LINE L1 285 437 -5682 1755 120 32 90 chr1 240432092 240432557 -41761107 + LTR21B LTR ERV1 1 438 0 338 343 69 71 chr1 240432557 240432866 -41760798 + L1MEd LINE L1 437 746 -5373 702 175 7 0 chr1 240433360 240433503 -41760161 + L1MB3 LINE L1 6036 6179 -4 1908 140 21 0 chr1 240434174 240434476 -41759188 + AluSx SINE Alu 1 308 0 2304 133 20 6 chr1 240434689 240435034 -41758630 + THE1B LTR MaLR 1 350 -14 1046 92 0 0 chr1 240435045 240435186 -41758478 - MLT2A2 LTR ERVL 0 453 313 5762 71 1 0 chr1 240485189 240485949 -41707715 + L1PA6 LINE L1 3758 4518 -1628 7691 24 0 0 chr1 240485951 240487047 -41706617 + L1PA3 LINE L1 5059 6154 -1 6927 61 10 0 chr1 240487045 240488687 -41704977 + L1PA6 LINE L1 4507 6148 -6 * 203 0 37 0 chr1 240488833 240488860 -41704804 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr1 240488943 240488972 -41704692 + AT_rich Low_complexity Low_complexity 1 29 0 566 314 231 6 chr1 240489507 240490052 -41703612 + L2 LINE L2 2196 2863 -451 258 322 0 46 chr1 240491066 240491153 -41702511 + MIR SINE MIR 60 142 -66 265 352 111 9 chr1 240491794 240491902 -41701762 - L2 LINE L2 -3 3269 3151 2240 102 23 7 chr1 240492178 240492482 -41701182 + AluSg1 SINE Alu 1 309 0 180 358 74 14 chr1 240494581 240494729 -41698935 + L2 LINE L2 2671 2827 -487 1417 168 119 90 chr1 240494850 240495195 -41698469 - MLT1A1 LTR MaLR -10 355 1 598 212 162 45 chr1 240495195 240495393 -41698271 - L1MD3 LINE L1 -181 7814 7594 322 180 36 18 chr1 240495808 240495919 -41697745 + CT-rich Low_complexity Low_complexity 3 115 0 671 241 63 6 chr1 240495931 240496089 -41697575 - MER3 DNA MER1_type -41 168 2 320 282 144 23 chr1 240496320 240496494 -41697170 - MIR SINE MIR -19 243 49 300 333 114 38 chr1 240496547 240496940 -41696724 - HAL1 LINE L1 -1205 1302 880 210 262 16 0 chr1 240496949 240497010 -41696654 + CT-rich Low_complexity Low_complexity 4 65 0 553 207 0 0 chr1 240499151 240499177 -41694487 - L1MA9 LINE L1 -22 6290 6265 1889 193 66 17 chr1 240499177 240499621 -41694043 - L1MA9 LINE L1 -44 6122 5697 1905 246 96 38 chr1 240500035 240500950 -41692714 + L1ME1 LINE L1 4394 5361 -785 851 193 37 118 chr1 240500970 240501318 -41692346 + L1ME1 LINE L1 5842 6161 -5 298 222 51 43 chr1 240501969 240502086 -41691578 - L1MEc LINE L1 -5628 768 651 632 312 64 43 chr1 240502228 240502603 -41691061 - L1MEc LINE L1 -5977 419 37 269 250 58 32 chr1 240502814 240502991 -41690673 - MLT1H LTR MaLR 0 555 412 252 273 141 37 chr1 240503171 240503413 -41690251 - L1M4 LINE L1 -2137 4009 3743 2746 166 6 2 chr1 240503421 240503910 -41689754 - L1MB3 LINE L1 -2 6181 5691 1997 192 11 13 chr1 240503911 240504253 -41689411 + MER44D DNA MER2_type 1 398 -2089 2560 42 0 0 chr1 240504253 240504563 -41689101 + AluY SINE Alu 1 310 -1 1997 192 11 13 chr1 240504563 240504601 -41689063 + MER44D DNA MER2_type 398 435 -170 773 276 9 19 chr1 240504702 240504876 -41688788 + L1ME1 LINE L1 5955 6128 -38 2225 109 0 0 chr1 240504876 240505178 -41688486 - AluSc SINE Alu -7 302 1 773 276 9 19 chr1 240505178 240505213 -41688451 + L1ME1 LINE L1 6128 6162 -4 255 114 0 0 chr1 240505223 240505267 -41688397 + (CA)n Simple_repeat Simple_repeat 1 44 0 1487 288 77 29 chr1 240505400 240506560 -41687104 + L1ME3A LINE L1 4901 6117 -53 429 125 0 14 chr1 240506922 240506994 -41686670 + AluJ/FLAM SINE Alu 1 71 -241 840 205 12 0 chr1 240506994 240507165 -41686499 + AluJo/FRAM SINE Alu 133 305 -7 969 144 0 25 chr1 240507277 240507437 -41686227 + THE1-int LTR MaLR 1265 1420 -160 409 178 0 131 chr1 240507568 240507675 -41685989 + LOR1-int LTR ERV1 3783 3875 -4245 324 189 41 54 chr1 240507962 240508074 -41685590 + L1MC4 LINE L1 1993 6983 -1339 279 79 0 0 chr1 240508074 240508112 -41685552 + (TG)n Simple_repeat Simple_repeat 2 39 0 309 177 208 10 chr1 240508124 240508220 -41685444 + LOR1-int LTR ERV1 4850 4964 -1367 * 1502 231 78 8 chr1 240508217 240508577 -41685087 + LOR1-int LTR ERV1 5932 6316 -442 1544 180 30 76 chr1 240508680 240508849 -41684815 + LOR1-int LTR ERV1 6363 6538 -220 565 49 85 0 chr1 240508849 240508931 -41684733 + L1PA4 LINE L1 6067 6155 0 1544 180 30 76 chr1 240508931 240509167 -41684497 + LOR1-int LTR ERV1 6538 6749 -9 1158 119 11 6 chr1 240509174 240509372 -41684292 + AluSq SINE Alu 116 313 0 419 307 76 87 chr1 240511219 240511669 -41681995 - L1MC4a LINE L1 -1910 5898 5454 2369 73 0 10 chr1 240511792 240512094 -41681570 - AluSg SINE Alu -10 300 2 21 57 0 0 chr1 240513230 240513265 -41680399 + AT_rich Low_complexity Low_complexity 1 35 0 448 344 111 25 chr1 240514086 240514647 -41679017 + L2 LINE L2 2150 2758 -556 870 329 10 3 chr1 240514674 240514963 -41678701 + MLT2E LTR ERVL 137 427 -201 1325 288 41 78 chr1 240514978 240515735 -41677929 + L1ME1 LINE L1 1441 2224 -4172 4840 125 19 16 chr1 240515735 240516511 -41677153 - MER4E LTR ERV1 0 779 1 1325 288 41 78 chr1 240516511 240516671 -41676993 + L1ME1 LINE L1 2224 2318 -4078 2546 82 120 5 chr1 240516671 240517072 -41676592 + LTR7 LTR ERV1 1 447 -3 1325 288 41 78 chr1 240517072 240517195 -41676469 + L1ME1 LINE L1 2318 2444 -3952 947 197 100 48 chr1 240517200 240517489 -41676175 - LTR52 LTR ERVL -3 418 115 1024 267 104 42 chr1 240517499 240517789 -41675875 + L1ME1 LINE L1 3104 3374 -2841 1661 171 13 7 chr1 240517789 240518087 -41675577 + AluJb SINE Alu 1 300 -12 1024 267 104 42 chr1 240518087 240518514 -41675150 + L1ME1 LINE L1 3374 3866 -2349 1854 122 13 101 chr1 240518517 240518902 -41674762 - MLT2B3 LTR ERVL -1 553 203 1336 139 10 0 chr1 240518903 240519112 -41674552 - AluSg/x SINE Alu -19 293 83 284 51 0 0 chr1 240519224 240519263 -41674401 - MLT2B3 LTR ERVL -514 40 2 1409 259 35 9 chr1 240519266 240519729 -41673935 + L1ME1 LINE L1 3869 4343 -1872 515 271 10 20 chr1 240519757 240519960 -41673704 + L1ME1 LINE L1 5042 5242 -973 545 162 167 131 chr1 240519960 240519998 -41673666 - MLT2D LTR ERVL 0 414 379 204 40 0 0 chr1 240519998 240520023 -41673641 + (TG)n Simple_repeat Simple_repeat 1 25 0 545 162 167 131 chr1 240520023 240520182 -41673482 - MLT2D LTR ERVL -35 379 210 2571 185 47 2 chr1 240520182 240520647 -41673017 + MLT2B1 LTR ERVL 1 486 -34 257 110 55 0 chr1 240520664 240520737 -41672927 + (TA)n Simple_repeat Simple_repeat 2 78 0 334 143 0 70 chr1 240520767 240520849 -41672815 + MLT2B1 LTR ERVL 370 520 0 806 246 14 5 chr1 240520854 240521061 -41672603 - MLT2D LTR ERVL -205 209 1 1647 255 102 21 chr1 240521102 240521472 -41672192 + L1ME1 LINE L1 5284 5623 -612 603 257 34 34 chr1 240521472 240521678 -41671986 - MER3 DNA MER1_type -2 207 2 1647 255 102 21 chr1 240521678 240521977 -41671687 + L1ME1 LINE L1 5623 5994 -241 227 272 49 12 chr1 240522089 240522170 -41671494 - L1MEc LINE L1 -2468 3661 3578 509 374 60 11 chr1 240522183 240522629 -41671035 - L1MEc LINE L1 -3459 2670 2203 264 313 65 32 chr1 240522985 240523231 -41670433 - L1MEc LINE L1 -4640 1670 1417 32 43 0 0 chr1 240523492 240523538 -41670126 + AT_rich Low_complexity Low_complexity 1 46 0 228 267 47 12 chr1 240523538 240523624 -41670040 - L1MEc LINE L1 -5063 1056 968 2355 93 0 6 chr1 240523645 240523957 -41669707 - AluSg SINE Alu 0 310 1 24 32 0 0 chr1 240523963 240523994 -41669670 + AT_rich Low_complexity Low_complexity 1 31 0 298 273 55 97 chr1 240524039 240524442 -41669222 - L1MEc LINE L1 -5221 898 513 26 30 0 0 chr1 240524564 240524597 -41669067 + AT_rich Low_complexity Low_complexity 1 33 0 321 342 57 53 chr1 240524632 240524913 -41668751 - L1MEc LINE L1 -5778 341 60 1236 275 77 38 chr1 240525610 240526006 -41667658 - L1ME3A LINE L1 -34 6136 5710 1366 204 99 25 chr1 240526006 240526369 -41667295 + MLT1B LTR MaLR 1 390 0 1236 275 77 38 chr1 240526369 240526546 -41667118 - L1ME3A LINE L1 -460 5710 5541 205 302 16 16 chr1 240528629 240528692 -41664972 - L2 LINE L2 0 3272 3210 2019 207 100 10 chr1 240528842 240529340 -41664324 + MER90 LTR ERV1 70 612 -2 379 232 10 0 chr1 240529368 240529469 -41664195 - HsTC2 DNA Tc2 0 1900 3 618 193 186 21 chr1 240529758 240529903 -41663761 + MER58B DNA MER1_type 170 338 -3 591 237 14 22 chr1 240530036 240530175 -41663489 + MIR SINE MIR 113 250 -12 29 70 0 0 chr1 240530834 240530891 -41662773 + AT_rich Low_complexity Low_complexity 1 57 0 2075 120 0 0 chr1 240531097 240531388 -41662276 - AluSx SINE Alu -6 306 16 338 183 28 42 chr1 240533229 240533300 -41660364 + Alu SINE Alu 223 292 -8 668 192 58 100 chr1 240533301 240533338 -41660326 - MER4D-int LTR ERV1 -2591 4007 3970 2088 74 0 19 chr1 240533338 240533608 -41660056 - AluY SINE Alu -10 301 37 668 192 58 100 chr1 240533608 240533861 -41659803 - MER4D-int LTR ERV1 -2628 3970 3729 3294 178 50 7 chr1 240533955 240534353 -41659311 + MER39B LTR ERV1 3 437 -216 2146 210 7 12 chr1 240534353 240534781 -41658883 - MSTB LTR MaLR 0 426 1 3294 178 50 7 chr1 240534781 240534979 -41658685 + MER39B LTR ERV1 437 625 -28 2758 150 30 68 chr1 240534989 240535226 -41658438 - MER4D-int LTR ERV1 -2896 3702 3457 1818 141 44 41 chr1 240535226 240535589 -41658075 - THE1B LTR MaLR 0 364 1 2758 150 30 68 chr1 240535589 240536235 -41657429 - MER4D-int LTR ERV1 -3141 3457 1659 1040 181 59 53 chr1 240536773 240537076 -41656588 - MER4D-int LTR ERV1 -6456 1664 1360 252 98 73 0 chr1 240537086 240537127 -41656537 - MER4D-int LTR ERV1 -6709 49 6 558 209 9 0 chr1 240537131 240537236 -41656428 - MER4D LTR ERV1 0 903 798 416 267 130 25 chr1 240537333 240537494 -41656170 - HAL1 LINE L1 -1482 1025 848 225 256 23 12 chr1 240537513 240537599 -41656065 - HsTC2 DNA Tc2 -4 1894 1808 388 79 16 16 chr1 240539026 240539089 -41654575 - MADE1 DNA Mariner 0 80 18 3893 288 57 48 chr1 240539615 240540964 -41652700 + L1MB8 LINE L1 11 1382 -5577 2051 151 40 0 chr1 240540964 240541314 -41652350 - THE1B LTR MaLR 0 364 1 3893 288 57 48 chr1 240541314 240542135 -41651529 + L1MB8 LINE L1 1382 2195 -4764 2428 239 28 3 chr1 240542141 240542790 -41650874 + L1MB8 LINE L1 4380 5044 -1913 766 280 67 134 chr1 240542787 240543191 -41650473 + L1MB8 LINE L1 5741 6117 -840 * 28 29 0 0 chr1 240543191 240543226 -41650438 + AT_rich Low_complexity Low_complexity 1 35 0 1237 239 20 49 chr1 240543226 240543607 -41650057 + L1MB8 LINE L1 6101 6492 -497 2023 175 15 39 chr1 240543607 240543934 -41649730 - MSTD LTR MaLR 0 396 79 1691 100 0 0 chr1 240543934 240544163 -41649501 + AluSq SINE Alu 85 313 0 2023 175 15 39 chr1 240544163 240544241 -41649423 - MSTD LTR MaLR -317 79 1 1237 239 20 49 chr1 240544241 240544600 -41649064 + L1MB8 LINE L1 6492 6871 -118 1624 192 77 3 chr1 240544600 240544923 -41648741 + MER7A DNA MER2_type 2 346 0 1237 239 20 49 chr1 240544923 240545038 -41648626 + L1MB8 LINE L1 6871 6988 -1 26 50 0 0 chr1 240545264 240545304 -41648360 + AT_rich Low_complexity Low_complexity 1 40 0 2327 264 36 48 chr1 240545443 240546834 -41646830 - L1MCb LINE L1 -4600 2145 570 7859 133 21 12 chr1 240546947 240548235 -41645429 + HSMAR2 DNA Mariner 3 1302 0 779 255 96 22 chr1 240548237 240548508 -41645156 - MER2 DNA MER2_type 0 345 55 951 300 136 10 chr1 240548563 240549063 -41644601 - L1MCb LINE L1 -5482 563 1 2084 149 42 20 chr1 240552305 240552661 -41641003 + THE1B LTR MaLR 1 364 0 211 364 68 0 chr1 240553498 240553586 -41640078 - MIR SINE MIR -109 153 60 1632 257 8 5 chr1 240554850 240555231 -41638433 - MLT1F LTR MaLR 0 542 161 273 259 98 71 chr1 240556840 240556952 -41636712 + L2 LINE L2 3191 3305 -8 362 156 0 0 chr1 240557274 240557338 -41636326 - L1MA5 LINE L1 -6 6294 6231 21 0 0 0 chr1 240559245 240559266 -41634398 + AT_rich Low_complexity Low_complexity 1 21 0 2430 60 0 3 chr1 240560928 240561228 -41632436 + AluSc SINE Alu 1 299 -10 346 321 101 24 chr1 240561505 240561714 -41631950 + MIR SINE MIR 32 256 -6 2065 102 14 0 chr1 240561742 240562025 -41631639 + AluSc SINE Alu 17 303 -6 269 286 9 38 chr1 240562706 240562811 -41630853 - L1ME1 LINE L1 -4 6162 6061 245 211 0 0 chr1 240562822 240562879 -41630785 - L1MEc LINE L1 -5297 1099 1043 1347 264 116 24 chr1 240563306 240563771 -41629893 + MLT1E LTR MaLR 42 549 -44 1303 283 31 4 chr1 240563792 240564269 -41629395 + MLT1E-int LTR MaLR 2 606 -765 348 310 50 25 chr1 240564504 240564704 -41628960 + MLT1E-int LTR MaLR 694 898 -473 656 242 47 147 chr1 240564813 240564936 -41628728 + MLT1E-int LTR MaLR 961 1095 -276 2068 124 3 0 chr1 240564936 240565219 -41628445 - AluSq SINE Alu -29 284 1 656 242 47 147 chr1 240565219 240565525 -41628139 + MLT1E-int LTR MaLR 1095 1347 -24 866 260 158 104 chr1 240565588 240566126 -41627538 + MLT1E LTR MaLR 20 586 -7 966 83 0 0 chr1 240566214 240566347 -41627317 + AluY SINE Alu 175 307 -4 1547 199 84 19 chr1 240566972 240567343 -41626321 + MSTD LTR MaLR 2 396 0 23 0 0 0 chr1 240567986 240568009 -41625655 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 240568990 240569011 -41624653 + AT_rich Low_complexity Low_complexity 1 21 0 252 289 70 39 chr1 240569510 240569554 -41624110 - MIR SINE MIR -11 251 210 182 37 37 0 chr1 240569554 240569581 -41624083 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1544 197 3 0 chr1 240569584 240569868 -41623796 - AluJb SINE Alu -25 287 3 252 289 70 39 chr1 240569868 240569975 -41623689 - MIR SINE MIR -53 209 91 29 0 0 0 chr1 240570161 240570190 -41623474 + AT_rich Low_complexity Low_complexity 1 29 0 416 321 71 5 chr1 240570705 240570889 -41622775 + MER102a DNA MER1_type 124 319 -11 1701 182 0 13 chr1 240571090 240571398 -41622266 - AluJb SINE Alu -8 304 1 2315 68 0 0 chr1 240571467 240571760 -41621904 - AluY SINE Alu -18 293 1 1483 100 14 0 chr1 240573734 240573954 -41619710 - L1PA6 LINE L1 0 6154 5932 821 286 0 5 chr1 240573973 240574197 -41619467 - MER58A DNA MER1_type 0 224 2 26 0 0 0 chr1 240574443 240574469 -41619195 + AT_rich Low_complexity Low_complexity 1 26 0 295 314 17 0 chr1 240574597 240574715 -41618949 + L1ME3 LINE L1 4754 4873 -1273 419 291 104 57 chr1 240575004 240575608 -41618056 + L1ME3A LINE L1 5542 6168 -2 346 349 79 28 chr1 240575930 240576182 -41617482 - L2 LINE L2 -493 2821 2557 261 316 7 43 chr1 240576185 240576324 -41617340 + MER104 DNA Tc2 41 174 -6 29 0 0 0 chr1 240576706 240576735 -41616929 + AT_rich Low_complexity Low_complexity 1 29 0 1853 135 50 58 chr1 240577137 240577515 -41616149 + THE1C LTR MaLR 1 375 0 1367 115 60 5 chr1 240577730 240577948 -41615716 - MER30 DNA MER1_type 0 230 1 185 355 113 28 chr1 240578341 240578482 -41615182 - MER5A DNA MER1_type -5 184 32 391 214 10 0 chr1 240578670 240578773 -41614891 - L1MEd LINE L1 -5989 130 27 2037 102 0 11 chr1 240579846 240580154 -41613510 + AluSc SINE Alu 1 305 0 2117 116 0 10 chr1 240580531 240580834 -41612830 + AluSq SINE Alu 1 300 -13 353 274 7 22 chr1 240581169 240581304 -41612360 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 186 311 62 68 chr1 240582574 240582751 -41610913 + MIR SINE MIR 30 205 -57 1329 137 31 13 chr1 240583301 240583528 -41610136 + AluJb SINE Alu 4 234 -78 21 57 0 0 chr1 240584042 240584077 -41609587 + AT_rich Low_complexity Low_complexity 1 35 0 444 312 149 39 chr1 240584225 240585059 -41608605 + L1MC/D LINE L1 4556 5482 -746 41 0 0 0 chr1 240586321 240586362 -41607302 + AT_rich Low_complexity Low_complexity 1 41 0 1574 271 59 45 chr1 240586504 240587484 -41606180 + L1ME3 LINE L1 4972 5976 -186 369 298 9 9 chr1 240587484 240587598 -41606066 - MER81 DNA DNA 0 114 1 1574 271 59 45 chr1 240587598 240587617 -41606047 + L1ME3 LINE L1 5976 5993 -169 1854 235 63 44 chr1 240587618 240588141 -41605523 - MLT1F LTR MaLR 0 542 10 592 181 76 35 chr1 240588142 240588286 -41605378 + L1ME3 LINE L1 6007 6156 -6 182 421 0 9 chr1 240588329 240588436 -41605228 + L2 LINE L2 2702 2807 -507 336 250 61 75 chr1 240588453 240588665 -41604999 + L1MC5 LINE L1 6968 7176 -785 1075 190 5 5 chr1 240588870 240589075 -41604589 + AluJb SINE Alu 86 290 -22 2311 92 0 9 chr1 240593107 240593422 -41600242 + AluSx SINE Alu 1 312 0 2326 89 7 0 chr1 240593654 240593957 -41599707 - AluSp SINE Alu -6 307 3 632 348 79 54 chr1 240594027 240594699 -41598965 + L2 LINE L2 2573 3271 -1 209 83 28 0 chr1 240594984 240595020 -41598644 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 56 0 0 chr1 240595289 240595325 -41598339 + AT_rich Low_complexity Low_complexity 1 36 0 1223 190 0 5 chr1 240596339 240596560 -41597104 + AluJb SINE Alu 81 300 -12 257 282 82 0 chr1 240597632 240597717 -41595947 - MIR SINE MIR -84 124 33 25 65 0 0 chr1 240597793 240597839 -41595825 + AT_rich Low_complexity Low_complexity 1 46 0 182 308 15 0 chr1 240597975 240598040 -41595624 - MIR SINE MIR -11 251 186 189 338 14 40 chr1 240598069 240598143 -41595521 - MIR SINE MIR -174 88 17 238 176 0 0 chr1 240598773 240598824 -41594840 + L1MC4 LINE L1 6653 6703 -1339 11062 139 84 71 chr1 240598933 240599278 -41594386 - Tigger1 DNA MER2_type 0 2418 2079 1403 39 6 0 chr1 240599278 240599456 -41594208 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1867 119 22 0 chr1 240599455 240599791 -41593873 - AluSx SINE Alu 0 342 1 11062 139 84 71 chr1 240599791 240601832 -41591832 - Tigger1 DNA MER2_type -674 1744 1 359 278 21 21 chr1 240601871 240602015 -41591649 - L1ME2 LINE L1 -306 5858 5715 614 311 102 29 chr1 240602263 240603099 -41590565 - L1ME2 LINE L1 -743 5403 4507 2007 260 49 5 chr1 240603362 240603958 -41589706 + MLT1E2 LTR MaLR 5 626 0 674 164 0 8 chr1 240604218 240604340 -41589324 + L1PB4 LINE L1 6034 6154 -2 266 374 49 16 chr1 240604917 240605040 -41588624 - L2 LINE L2 0 3272 3146 343 330 53 29 chr1 240605330 240605536 -41588128 - L2 LINE L2 -482 2832 2622 1281 148 65 0 chr1 240605815 240606031 -41587633 - MER30 DNA MER1_type 0 230 1 315 323 104 32 chr1 240606679 240606899 -41586765 - MIR SINE MIR -6 256 21 24 32 0 0 chr1 240607311 240607342 -41586322 + AT_rich Low_complexity Low_complexity 1 31 0 1530 298 87 2 chr1 240608433 240608967 -41584697 + MLT1G LTR MaLR 32 590 0 452 298 31 13 chr1 240608985 240609262 -41584402 + L1ME LINE L1 1332 1657 -5290 884 298 35 8 chr1 240609316 240609692 -41583972 + L1ME2 LINE L1 5773 6158 -6 22 0 0 0 chr1 240610651 240610673 -41582991 + AT_rich Low_complexity Low_complexity 1 22 0 1383 261 102 11 chr1 240610803 240611331 -41582333 - MER119 DNA MER1_type 0 583 8 735 209 82 5 chr1 240612192 240612388 -41581276 + L1MEc LINE L1 52 262 -6134 331 240 50 110 chr1 240612534 240612851 -41580813 - L1MCa LINE L1 -5762 707 34 355 266 106 0 chr1 240613469 240613563 -41580101 - L2 LINE L2 -18 3254 3151 21 36 0 0 chr1 240613939 240613967 -41579697 + AT_rich Low_complexity Low_complexity 1 28 0 202 231 0 77 chr1 240614349 240614440 -41579224 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 240 415 23 0 chr1 240614816 240614946 -41578718 + MIR3 SINE MIR 55 187 -21 209 309 100 36 chr1 240616631 240616741 -41576923 - MIR SINE MIR -21 241 125 241 204 161 54 chr1 240617663 240617756 -41575908 - Zaphod DNA AcHobo 0 4031 3929 836 118 0 0 chr1 240618691 240618818 -41574846 + HERVL-A2 LTR ERVL 5528 5654 0 1980 161 54 34 chr1 240618818 240619359 -41574305 + MLT2A2 LTR ERVL 1 554 0 2396 105 0 0 chr1 240620445 240620758 -41572906 + AluSq SINE Alu 1 313 0 361 251 89 45 chr1 240620785 240620964 -41572700 - MIR3 SINE MIR -13 195 9 2860 158 117 39 chr1 240621275 240622003 -41571661 + LTR1B LTR ERV1 1 826 0 199 344 119 6 chr1 240622571 240622731 -41570933 + L2 LINE L2 2698 2875 -439 2279 103 0 3 chr1 240622818 240623119 -41570545 - AluSc SINE Alu -9 300 1 2128 128 0 0 chr1 240624262 240624559 -41569105 + AluSx SINE Alu 1 297 -15 465 85 0 0 chr1 240624738 240624841 -41568823 + AluSc SINE Alu 224 326 0 268 259 12 59 chr1 240625285 240625370 -41568294 + MIR SINE MIR 58 138 -124 1809 187 187 20 chr1 240625400 240625982 -41567682 - MER39 LTR ERV1 0 707 1 267 256 78 0 chr1 240626517 240626607 -41567057 + L1ME LINE L1 5568 5664 -457 1194 221 11 22 chr1 240627330 240627597 -41566067 - MER67A LTR ERV1 -12 531 268 1579 200 16 17 chr1 240627649 240627979 -41565685 - MER67B LTR ERV1 -252 409 107 4088 131 18 0 chr1 240627979 240628580 -41565084 - LTR9 LTR ERV1 0 612 1 1579 200 16 17 chr1 240628580 240628687 -41564977 - MER67B LTR ERV1 -554 107 1 228 192 19 19 chr1 240629059 240629111 -41564553 - L2 LINE L2 -4 3268 3217 307 249 86 140 chr1 240629387 240629550 -41564114 + MIR SINE MIR 6 151 -111 1786 160 39 0 chr1 240629550 240629832 -41563832 - AluJb SINE Alu -19 293 1 307 249 86 140 chr1 240629832 240629925 -41563739 + MIR SINE MIR 151 248 -14 1273 169 25 12 chr1 240630141 240630443 -41563221 - MER2 DNA MER2_type 0 345 1 242 373 28 75 chr1 240631963 240632392 -41561272 + L2 LINE L2 2342 2750 -564 208 206 0 29 chr1 240632653 240632721 -41560943 + (CATA)n Simple_repeat Simple_repeat 3 68 0 32 0 0 0 chr1 240632896 240632928 -41560736 + AT_rich Low_complexity Low_complexity 1 32 0 5040 108 0 1 chr1 240633475 240634167 -41559497 + LTR8 LTR ERV1 1 691 0 1021 223 101 21 chr1 240634298 240634832 -41558832 + LTR48B LTR ERV1 8 640 -4 1716 181 3 19 chr1 240635353 240635663 -41558001 + AluSx SINE Alu 1 305 -7 2209 148 13 13 chr1 240635818 240636191 -41557473 + MER83C LTR ERV1 1 373 0 505 309 24 0 chr1 240637277 240637442 -41556222 + LTR16A LTR ERVL 282 450 0 318 326 54 33 chr1 240637668 240637852 -41555812 + L3b LINE CR1 1108 1295 -288 213 299 227 10 chr1 240637883 240638090 -41555574 + L2 LINE L2 2606 2857 -457 270 224 17 0 chr1 240638462 240638520 -41555144 + L2 LINE L2 3188 3246 -67 201 143 0 0 chr1 240638592 240638627 -41555037 + L2 LINE L2 3279 3313 0 309 279 22 15 chr1 240639031 240639167 -41554497 + T-rich Low_complexity Low_complexity 1 137 0 202 109 0 65 chr1 240639197 240639243 -41554421 + (TA)n Simple_repeat Simple_repeat 1 43 0 450 0 0 0 chr1 240639368 240639418 -41554246 + (TA)n Simple_repeat Simple_repeat 1 50 0 237 33 0 0 chr1 240639417 240639447 -41554217 + (CA)n Simple_repeat Simple_repeat 2 31 0 * 754 76 0 17 chr1 240639770 240639888 -41553776 + LTR9B LTR ERV1 445 560 -84 22 35 0 0 chr1 240640107 240640136 -41553528 + AT_rich Low_complexity Low_complexity 1 29 0 248 206 63 0 chr1 240640139 240640202 -41553462 - MIR SINE MIR -21 241 175 230 284 59 29 chr1 240640518 240640620 -41553044 - HAL1 LINE L1 -1029 1478 1374 260 294 75 19 chr1 240640791 240640951 -41552713 - MLT1H LTR MaLR -351 198 30 1498 119 5 0 chr1 240641028 240641238 -41552426 - AluSq SINE Alu -17 296 86 34 65 0 0 chr1 240641440 240641502 -41552162 + AT_rich Low_complexity Low_complexity 1 62 0 253 321 0 0 chr1 240641642 240641723 -41551941 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 267 310 0 23 chr1 240641799 240641886 -41551778 - MER69A DNA AcHobo -87 90 6 22 56 0 0 chr1 240642589 240642625 -41551039 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 240643907 240643929 -41549735 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 240644337 240644368 -41549296 + AT_rich Low_complexity Low_complexity 1 31 0 731 251 203 5 chr1 240644435 240644830 -41548834 - MER114 LTR ERV -125 523 51 1626 192 30 18 chr1 240645183 240645522 -41548142 - MLT1A1 LTR MaLR -12 353 11 245 179 54 0 chr1 240645571 240645627 -41548037 - MER94 DNA DNA -68 66 8 463 271 69 18 chr1 240645627 240645912 -41547752 + L1ME1 LINE L1 5604 5911 -255 22 0 0 0 chr1 240646176 240646198 -41547466 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 240646293 240646314 -41547350 + AT_rich Low_complexity Low_complexity 1 21 0 331 329 7 7 chr1 240646369 240646521 -41547143 + (TG)n Simple_repeat Simple_repeat 2 153 0 387 301 52 29 chr1 240647339 240647475 -41546189 + MIR SINE MIR 5 143 -119 319 307 157 43 chr1 240649004 240649349 -41544315 - L2 LINE L2 0 3313 2930 804 296 82 22 chr1 240649864 240650448 -41543216 - L1ME3A LINE L1 -289 5881 5263 15205 162 43 6 chr1 240650694 240656833 -41536831 + L1MA2 LINE L1 1343 7719 -4 26 82 0 0 chr1 240656851 240656912 -41536752 + AT_rich Low_complexity Low_complexity 1 61 0 265 228 147 38 chr1 240657151 240657335 -41536329 - L1ME3A LINE L1 -1487 4659 4456 609 197 44 36 chr1 240657713 240657850 -41535814 - MLT1A1 LTR MaLR -53 312 175 658 151 0 0 chr1 240657883 240657989 -41535675 - AluSq/x SINE Alu -179 133 28 13762 188 56 15 chr1 240658015 240659716 -41533948 - L1PB1 LINE L1 -3 6864 5234 189 0 0 0 chr1 240659716 240659737 -41533927 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 13762 188 56 15 chr1 240659737 240664151 -41529513 - L1PB1 LINE L1 -1633 5234 335 219 211 0 58 chr1 240664910 240664962 -41528702 - L2 LINE L2 -5 3267 3219 1478 226 29 23 chr1 240666668 240667017 -41526647 - MLT1A1 LTR MaLR -14 351 1 204 250 0 0 chr1 240667093 240667141 -41526523 + (TA)n Simple_repeat Simple_repeat 1 48 0 1548 42 10 0 chr1 240667153 240667346 -41526318 - L1PA5 LINE L1 -4 6150 5956 274 267 41 41 chr1 240667381 240667527 -41526137 + MER103 DNA DNA 20 165 -1 269 356 39 0 chr1 240667754 240667858 -41525806 - L2 LINE L2 -5 3267 3160 1942 147 0 3 chr1 240668481 240668800 -41524864 + AluSx SINE Alu 1 318 0 1684 134 81 34 chr1 240669562 240669920 -41523744 + THE1C LTR MaLR 1 375 0 3205 221 146 91 chr1 240671840 240674005 -41519659 + L1MCa LINE L1 22 2304 -4122 3573 157 76 4 chr1 240674015 240674715 -41518949 + L1MC1 LINE L1 5566 6315 -18 195 162 0 0 chr1 240674778 240674815 -41518849 + (CA)n Simple_repeat Simple_repeat 2 38 0 1075 181 90 48 chr1 240674817 240674870 -41518794 + L1MC3 LINE L1 6990 7039 -746 1334 208 105 6 chr1 240674870 240675183 -41518481 + MER2 DNA MER2_type 1 344 0 1075 181 90 48 chr1 240675183 240675439 -41518225 + L1MC3 LINE L1 7039 7312 -473 371 252 19 10 chr1 240675865 240675968 -41517696 + MER70B LTR ERVL 456 559 -19 2106 206 39 9 chr1 240675994 240676461 -41517203 + L1MC3 LINE L1 7303 7783 -2 256 301 0 14 chr1 240677916 240677989 -41515675 + L2 LINE L2 3197 3268 -4 250 344 92 0 chr1 240678063 240678194 -41515470 + MIR SINE MIR 49 191 -71 22 70 0 0 chr1 240678496 240678539 -41515125 + AT_rich Low_complexity Low_complexity 1 43 0 387 0 0 0 chr1 240679236 240679279 -41514385 + (CA)n Simple_repeat Simple_repeat 1 43 0 2267 109 169 3 chr1 240680011 240680395 -41513269 + LTR7 LTR ERV1 1 448 -2 16205 103 13 22 chr1 240680397 240683542 -41510122 + HERVH LTR ERV1 1 2987 -4726 893 142 20 0 chr1 240683536 240683684 -41509980 + HERVH LTR ERV1 3140 3290 -4423 * 3294 100 10 4 chr1 240683683 240684174 -41509490 + HERVH LTR ERV1 3500 3993 -3720 4527 134 0 1 chr1 240684176 240684839 -41508825 + HERVH LTR ERV1 4488 5149 -2564 1350 128 23 14 chr1 240684840 240685058 -41508606 + HERVH LTR ERV1 5600 5819 -1894 * 2385 104 52 13 chr1 240685050 240685435 -41508229 + HERVH LTR ERV1 7314 7713 0 2754 68 120 0 chr1 240685435 240685835 -41507829 + LTR7 LTR ERV1 1 448 -2 801 178 38 89 chr1 240685836 240686072 -41507592 - L1MB7 LINE L1 -34 6150 5927 353 305 38 38 chr1 240686310 240686441 -41507223 + MER5A DNA MER1_type 1 131 -58 800 111 5 4 chr1 240686447 240686665 -41506999 - AluSc SINE Alu -7 302 1 188 269 77 0 chr1 240687540 240687592 -41506072 + L2 LINE L2 1424 1479 -1835 2106 112 7 16 chr1 240688085 240688388 -41505276 + AluSq SINE Alu 1 300 -13 319 308 51 39 chr1 240688435 240688591 -41505073 + HAL1 LINE L1 1128 1285 -1222 243 231 44 22 chr1 240688706 240688797 -41504867 + HAL1 LINE L1 1400 1492 -1015 2137 120 3 0 chr1 240689355 240689647 -41504017 - AluSx SINE Alu -19 293 1 1000 143 6 0 chr1 240689898 240690059 -41503605 + L1PA14 LINE L1 6000 6161 0 191 188 21 0 chr1 240690092 240690140 -41503524 + (TA)n Simple_repeat Simple_repeat 1 49 0 2284 159 19 31 chr1 240691359 240691825 -41501839 - MER89 LTR ERV1 0 559 1 189 322 23 23 chr1 240692621 240692708 -41500956 - MIR SINE MIR -166 96 10 262 304 54 63 chr1 240693050 240693366 -41500298 + L1ME LINE L1 5520 5832 -289 254 282 0 14 chr1 240693452 240693523 -41500141 + MLT1H LTR MaLR 71 140 -409 2364 63 7 7 chr1 240693628 240693928 -41499736 + AluY SINE Alu 1 300 -11 2236 107 0 3 chr1 240694086 240694384 -41499280 - AluSg SINE Alu -13 297 1 2169 139 100 0 chr1 240694876 240695265 -41498399 + MSTA LTR MaLR 1 428 0 27 62 0 0 chr1 240695346 240695394 -41498270 + AT_rich Low_complexity Low_complexity 1 48 0 371 299 66 85 chr1 240695794 240696218 -41497446 + HAL1 LINE L1 905 1320 -1187 259 303 11 11 chr1 240696887 240696976 -41496688 - L2 LINE L2 -252 3020 2932 501 277 47 66 chr1 240698557 240698770 -41494894 - MIR SINE MIR -51 211 3 22 0 0 0 chr1 240699416 240699438 -41494226 + AT_rich Low_complexity Low_complexity 1 22 0 3648 45 0 2 chr1 240700014 240700463 -41493201 + L1PA5 LINE L1 5707 6154 0 647 258 116 27 chr1 240701305 240701530 -41492134 + MIR SINE MIR 6 250 -12 1652 116 67 21 chr1 240701590 240701875 -41491789 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr1 240702794 240702824 -41490840 + AT_rich Low_complexity Low_complexity 1 30 0 890 251 126 62 chr1 240703403 240703854 -41489810 - L2 LINE L2 -5 3308 2829 184 271 139 39 chr1 240703886 240704015 -41489649 - L2 LINE L2 -913 2401 2260 790 190 0 0 chr1 240704120 240704262 -41489402 + FAM SINE Alu 1 41 -8 203 0 37 0 chr1 240706103 240706130 -41487534 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1565 199 17 10 chr1 240706291 240706592 -41487072 + MLT1A1 LTR MaLR 63 365 0 2414 73 3 10 chr1 240707001 240707314 -41486350 - AluY SINE Alu 0 311 1 351 356 40 7 chr1 240707906 240708055 -41485609 - MIR SINE MIR -50 212 59 469 273 0 75 chr1 240708372 240708533 -41485131 - MIR SINE MIR -26 236 88 217 218 0 0 chr1 240709558 240709613 -41484051 + (TG)n Simple_repeat Simple_repeat 1 55 0 300 312 71 71 chr1 240710697 240711021 -41482643 + L1 LINE L1 4731 5054 -1092 4040 154 30 6 chr1 240712964 240713658 -41480006 + MER50 LTR ERV1 1 711 -23 21 36 0 0 chr1 240714125 240714153 -41479511 + AT_rich Low_complexity Low_complexity 1 28 0 484 255 32 48 chr1 240714299 240714487 -41479177 + LTR16C LTR ERVL 305 489 -2 2123 134 36 28 chr1 240714634 240714991 -41478673 - THE1B LTR MaLR 0 364 5 337 329 96 47 chr1 240715569 240715870 -41477794 - L2 LINE L2 -56 3216 2901 22 35 0 0 chr1 240716649 240716678 -41476986 + AT_rich Low_complexity Low_complexity 1 29 0 2309 67 0 73 chr1 240719022 240719352 -41474312 + AluY SINE Alu 6 311 0 183 42 0 0 chr1 240720340 240720364 -41473300 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 393 299 45 6 chr1 240720569 240720726 -41472938 + MER117 DNA MER1_type 4 166 -31 1816 164 3 20 chr1 240720867 240721166 -41472498 - AluJo SINE Alu -16 296 3 202 371 60 17 chr1 240721413 240721529 -41472135 + MIR3 SINE MIR 8 128 -80 217 286 0 52 chr1 240723069 240723146 -41470518 + L2 LINE L2 3198 3270 -2 27 0 0 0 chr1 240724830 240724857 -41468807 + AT_rich Low_complexity Low_complexity 1 27 0 1163 102 0 0 chr1 240724981 240725128 -41468536 + AluSq/x SINE Alu 1 147 -165 33 0 0 0 chr1 240725150 240725183 -41468481 + AT_rich Low_complexity Low_complexity 1 33 0 371 232 92 38 chr1 240725980 240726244 -41467420 + L1MC5 LINE L1 7518 7720 -241 1648 180 3 36 chr1 240726582 240726887 -41466777 - AluJo SINE Alu -17 295 1 255 347 48 8 chr1 240727132 240727256 -41466408 + L2 LINE L2 3185 3313 0 * 307 282 38 38 chr1 240727237 240727368 -41466296 + MIR SINE MIR 131 261 -1 1781 163 21 0 chr1 240727876 240728165 -41465499 - AluSg SINE Alu -14 296 2 290 326 49 7 chr1 240728777 240728921 -41464743 - MIR SINE MIR 0 262 113 201 94 0 0 chr1 240730337 240730369 -41463295 + (TC)n Simple_repeat Simple_repeat 2 33 0 655 250 0 13 chr1 240731121 240731167 -41462497 + MER63 DNA MER1_type 1 46 -790 258 32 0 0 chr1 240731167 240731198 -41462466 + (CA)n Simple_repeat Simple_repeat 2 32 0 655 250 0 13 chr1 240731198 240731307 -41462357 + MER63 DNA MER1_type 46 780 -56 280 363 29 20 chr1 240731327 240731531 -41462133 - MIR SINE MIR 0 262 57 1803 224 50 19 chr1 240732562 240732986 -41460678 + MSTD-int LTR MaLR 1299 1735 0 595 193 55 94 chr1 240732986 240733188 -41460476 + MSTD LTR MaLR 1 194 -171 605 229 16 4 chr1 240733289 240733471 -41460193 + MSTD LTR MaLR 177 383 -8 620 299 34 5 chr1 240733625 240733829 -41459835 - MER63A DNA MER1_type 0 210 1 1531 292 36 7 chr1 240734073 240734511 -41459153 - LTR16B LTR ERVL -4 460 10 2318 186 87 131 chr1 240734570 240735321 -41458343 - MER21A LTR ERV1 -75 856 139 555 109 43 109 chr1 240735305 240735443 -41458221 - MER21A LTR ERV1 -733 198 70 * 302 207 0 0 chr1 240735552 240735610 -41458054 - MER21A LTR ERV1 -861 70 13 2515 84 0 0 chr1 240736011 240736321 -41457343 - AluSg SINE Alu 0 310 1 188 339 54 54 chr1 240736371 240736483 -41457181 + L2 LINE L2 3127 3238 -34 24 0 0 0 chr1 240737107 240737131 -41456533 + AT_rich Low_complexity Low_complexity 1 24 0 469 228 134 8 chr1 240737816 240737943 -41455721 + Charlie4 DNA MER1_type 1 143 -1818 2086 144 88 44 chr1 240738261 240738310 -41455354 + MSTC LTR MaLR 1 46 -382 2377 88 3 0 chr1 240738310 240738607 -41455057 + AluSp SINE Alu 1 298 -15 2086 144 88 44 chr1 240738607 240738966 -41454698 + MSTC LTR MaLR 46 427 -1 303 289 74 71 chr1 240739433 240739769 -41453895 + L1M4 LINE L1 4110 4446 -1700 605 360 62 24 chr1 240739977 240740347 -41453317 + MLT1I LTR MaLR 25 408 -1 25 51 0 0 chr1 240740472 240740511 -41453153 + AT_rich Low_complexity Low_complexity 1 39 0 353 324 22 22 chr1 240740601 240740783 -41452881 - MIR SINE MIR -6 256 75 227 333 71 35 chr1 240741862 240742003 -41451661 + MIR SINE MIR 2 147 -115 25 0 0 0 chr1 240742699 240742724 -41450940 + AT_rich Low_complexity Low_complexity 1 25 0 1164 109 6 0 chr1 240743006 240743162 -41450502 - AluSg/x SINE Alu -21 291 135 27 29 0 0 chr1 240743976 240744010 -41449654 + AT_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr1 240744040 240744078 -41449586 + AT_rich Low_complexity Low_complexity 1 38 0 243 368 57 19 chr1 240744199 240744305 -41449359 - L2 LINE L2 -9 3263 3154 2402 62 0 0 chr1 240744943 240745248 -41448416 + L1PA6 LINE L1 5845 6149 -5 35 24 0 0 chr1 240745310 240745352 -41448312 + AT_rich Low_complexity Low_complexity 1 42 0 292 172 35 0 chr1 240746172 240746317 -41447347 + (TA)n Simple_repeat Simple_repeat 2 151 0 2313 91 0 7 chr1 240746571 240746868 -41446796 + AluSc SINE Alu 1 295 -14 1353 250 17 28 chr1 240746870 240747226 -41446438 - MLT1A2 LTR MaLR -22 352 1 292 354 80 29 chr1 240747298 240747473 -41446191 + LTR16B LTR ERVL 7 190 -274 735 240 58 4 chr1 240747617 240747859 -41445805 + L1ME1 LINE L1 2583 2837 -3988 3608 242 45 24 chr1 240747876 240748619 -41445045 + L1MB7 LINE L1 28 799 -5764 219 114 0 0 chr1 240748619 240748654 -41445010 + (CA)n Simple_repeat Simple_repeat 2 36 0 3608 242 45 24 chr1 240748654 240748919 -41444745 + L1MB7 LINE L1 799 1057 -5506 4497 106 14 13 chr1 240748988 240749694 -41443970 + L1PA14 LINE L1 5454 6160 -1 1885 215 23 10 chr1 240749708 240750285 -41443379 + L1MB7 LINE L1 5406 5986 -696 807 72 0 0 chr1 240750285 240750382 -41443282 + AluY SINE Alu 197 293 -18 875 173 40 45 chr1 240750389 240750591 -41443073 + L1MB7 LINE L1 5982 6182 -494 1726 209 63 8 chr1 240750595 240750993 -41442671 + L1MB7 LINE L1 6244 6663 -19 509 241 17 47 chr1 240751002 240751234 -41442430 + L1ME1 LINE L1 2769 2993 -3651 871 180 15 117 chr1 240751236 240751436 -41442228 + THE1C LTR MaLR 188 375 0 689 258 19 0 chr1 240751437 240751650 -41442014 - L1M4 LINE L1 -3437 2709 2493 405 191 0 0 chr1 240751687 240751750 -41441914 + AluJb SINE Alu 184 246 -56 1383 65 10 15 chr1 240751791 240751992 -41441672 + THE1C-int LTR MaLR 1381 1580 0 1513 131 52 16 chr1 240751992 240752244 -41441420 + THE1C LTR MaLR 1 261 -114 763 253 50 8 chr1 240752361 240752622 -41441042 + L1ME1 LINE L1 4447 4718 -1926 1871 247 73 67 chr1 240752672 240753144 -41440520 + L1ME1 LINE L1 4939 5407 -1257 198 0 0 0 chr1 240753144 240753166 -41440498 + (GA)n Simple_repeat Simple_repeat 2 23 0 1871 247 73 67 chr1 240753166 240754221 -41439443 + L1ME1 LINE L1 5407 6474 -190 348 287 28 19 chr1 240754488 240754596 -41439068 + MIR SINE MIR 13 121 -141 23 0 0 0 chr1 240755287 240755310 -41438354 + AT_rich Low_complexity Low_complexity 1 23 0 3507 136 19 57 chr1 240755917 240756198 -41437466 + MER39B LTR ERV1 1 291 -362 2549 42 0 3 chr1 240756198 240756509 -41437155 + AluY SINE Alu 1 310 -1 3507 136 19 57 chr1 240756509 240756906 -41436758 + MER39B LTR ERV1 291 653 0 207 69 0 0 chr1 240756995 240757024 -41436640 + (CAG)n Simple_repeat Simple_repeat 1 29 0 285 243 68 0 chr1 240757516 240757590 -41436074 - MIR SINE MIR -12 250 172 732 272 50 34 chr1 240757612 240757969 -41435695 - LTR24B LTR ERV1 -7 569 207 290 205 13 26 chr1 240758031 240758109 -41435555 - LTR24B LTR ERV1 -499 77 1 765 311 62 68 chr1 240758590 240759256 -41434408 - LTR24B-int LTR ERV1 -447 6675 6014 2494 55 0 26 chr1 240759367 240759675 -41433989 + AluY SINE Alu 1 300 -11 314 337 0 0 chr1 240759811 240759897 -41433767 - LTR24B-int LTR ERV1 -1404 5718 5633 2116 111 10 0 chr1 240760276 240760574 -41433090 + AluSq SINE Alu 1 301 -12 354 327 67 40 chr1 240760759 240761204 -41432460 - LTR24B-int LTR ERV1 -2094 5804 2142 201 255 0 0 chr1 240761576 240761623 -41432041 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2214 90 0 47 chr1 240761718 240762040 -41431624 - AluSx SINE Alu -5 307 1 702 161 40 0 chr1 240762815 240762939 -41430725 - FLAM_C SINE Alu -3 140 12 25 31 0 0 chr1 240764305 240764337 -41429327 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 240764357 240764378 -41429286 + AT_rich Low_complexity Low_complexity 1 21 0 537 199 0 0 chr1 240764518 240764659 -41429005 + GA-rich Low_complexity Low_complexity 3 143 0 254 231 31 0 chr1 240765158 240765223 -41428441 - LTR24B-int LTR ERV1 -4516 607 541 460 322 11 6 chr1 240765392 240765569 -41428095 - LTR24B-int LTR ERV1 -4929 194 17 615 226 24 38 chr1 240765584 240765796 -41427868 - LTR24B LTR ERV1 -7 569 361 346 213 0 13 chr1 240765962 240766037 -41427627 - LTR24B LTR ERV1 -499 77 4 681 281 90 7 chr1 240766381 240766691 -41426973 - LTR37A LTR ERV1 -20 406 71 1141 20 14 14 chr1 240766755 240766903 -41426761 + (GAAA)n Simple_repeat Simple_repeat 3 150 0 727 239 66 80 chr1 240766906 240766969 -41426695 + LTR56 LTR ERV1 23 85 -352 1974 108 3 65 chr1 240766969 240767292 -41426372 + AluSq SINE Alu 1 303 -10 727 239 66 80 chr1 240767292 240767662 -41426002 + LTR56 LTR ERV1 85 437 0 229 333 65 8 chr1 240767805 240767928 -41425736 + HAL1 LINE L1 9 138 -2369 323 379 104 21 chr1 240767983 240768271 -41425393 + HAL1 LINE L1 414 725 -1782 1004 198 88 68 chr1 240768392 240768585 -41425079 - LTR54B LTR ERV1 -2 496 308 1939 137 23 3 chr1 240768585 240768885 -41424779 + AluSx SINE Alu 1 306 -6 1004 198 88 68 chr1 240768885 240769177 -41424487 - LTR54B LTR ERV1 -190 308 1 313 336 16 16 chr1 240769585 240769707 -41423957 - MIR3 SINE MIR -5 203 82 27 0 0 0 chr1 240770314 240770341 -41423323 + AT_rich Low_complexity Low_complexity 1 27 0 50 18 0 0 chr1 240770535 240770592 -41423072 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr1 240770598 240770648 -41423016 + AT_rich Low_complexity Low_complexity 1 50 0 248 188 62 10 chr1 240770693 240770789 -41422875 + (TTATA)n Simple_repeat Simple_repeat 4 104 0 22 0 0 0 chr1 240771162 240771184 -41422480 + AT_rich Low_complexity Low_complexity 1 22 0 726 294 103 22 chr1 240771460 240771828 -41421836 - L1ME3A LINE L1 -278 5961 5564 368 290 116 27 chr1 240771841 240772134 -41421530 - L1ME3A LINE L1 -1156 5059 4741 1483 253 55 35 chr1 240772367 240772967 -41420697 + MLT1E2 LTR MaLR 57 626 0 685 270 98 43 chr1 240772979 240773583 -41420081 - L1ME3A LINE L1 -1711 4504 3868 826 239 11 5 chr1 240773597 240773781 -41419883 - MER68 LTR ERV1 0 562 378 309 310 118 6 chr1 240773781 240774113 -41419551 - L1MEd LINE L1 -5082 1123 789 272 405 74 24 chr1 240774630 240775141 -41418523 + L2 LINE L2 2100 2636 -678 283 258 14 30 chr1 240775170 240775248 -41418416 + MER5B DNA MER1_type 31 99 -79 200 369 0 0 chr1 240775299 240775383 -41418281 + L2 LINE L2 2664 2747 -567 736 281 18 27 chr1 240775645 240775869 -41417795 - MER58A DNA MER1_type -2 222 1 22 0 0 0 chr1 240775946 240775968 -41417696 + AT_rich Low_complexity Low_complexity 1 22 0 620 37 24 0 chr1 240776470 240776552 -41417112 + (GAAA)n Simple_repeat Simple_repeat 4 87 0 2938 124 4 31 chr1 240776559 240777067 -41416597 - L1PA16 LINE L1 -390 5776 5283 2073 154 34 0 chr1 240777069 240777427 -41416237 + L1PA16 LINE L1 5788 6157 -9 252 149 0 0 chr1 240777436 240777483 -41416181 + (TA)n Simple_repeat Simple_repeat 1 47 0 318 239 0 120 chr1 240777484 240777601 -41416063 + L1MC4 LINE L1 6610 6712 -1330 280 350 65 0 chr1 240778007 240778130 -41415534 - L2 LINE L2 -1 3312 3182 1550 202 139 25 chr1 240778661 240779101 -41414563 + LTR2B LTR ERV1 1 490 0 1959 127 11 0 chr1 240779101 240779384 -41414280 + AluSx SINE Alu 15 300 -12 403 256 154 39 chr1 240779470 240779704 -41413960 + MLT1J2 LTR MaLR 65 325 -125 242 226 24 24 chr1 240780420 240780524 -41413140 + L1P4 LINE L1 5478 5581 -585 302 100 0 0 chr1 240780539 240780589 -41413075 - Alu SINE Alu 0 301 252 867 161 0 0 chr1 240780693 240780836 -41412828 + AluSg/x SINE Alu 163 305 -7 241 321 99 25 chr1 240785189 240785270 -41408394 + L2 LINE L2 3186 3272 0 1964 129 7 7 chr1 240787473 240787759 -41405905 + AluSx SINE Alu 1 286 -26 234 0 0 0 chr1 240787769 240787795 -41405869 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 1958 144 32 26 chr1 240788093 240788434 -41405230 + MLT1B LTR MaLR 44 386 -4 196 51 26 26 chr1 240789206 240789245 -41404419 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2076 126 0 24 chr1 240789247 240789540 -41404124 - AluSx SINE Alu -26 286 1 3131 264 22 29 chr1 240790817 240791740 -41401924 + L1M4 LINE L1 5 920 -5622 4626 215 105 3 chr1 240791769 240793027 -41400637 - L1 LINE L1 -2131 4717 3332 409 196 47 19 chr1 240793043 240793150 -41400514 + MER4C LTR ERV1 7 116 -349 1278 265 84 40 chr1 240793164 240793738 -41399926 + LTR34 LTR ERV1 97 695 -4 2628 211 19 22 chr1 240793750 240794822 -41398842 - L1 LINE L1 -3532 3316 2248 3097 93 15 0 chr1 240794827 240795234 -41398430 + MLT2A2 LTR ERVL 1 413 -40 444 147 0 0 chr1 240795238 240795313 -41398351 + (CA)n Simple_repeat Simple_repeat 2 76 0 335 143 0 0 chr1 240795460 240795516 -41398148 - MLT2A2 LTR ERVL -40 413 358 317 134 0 42 chr1 240795532 240795604 -41398060 + MLT2C1 LTR ERVL 345 395 -2 5222 270 70 59 chr1 240795607 240797819 -41395845 - L1 LINE L1 -4604 2245 10 2837 214 34 35 chr1 240797831 240798569 -41395095 + L1MB7 LINE L1 5439 6175 -9 425 338 78 54 chr1 240798748 240799361 -41394303 + HAL1 LINE L1 94 721 -1786 1837 205 8 19 chr1 240799362 240799732 -41393932 + MLT2D LTR ERVL 1 366 -48 298 195 24 0 chr1 240799733 240799815 -41393849 + CT-rich Low_complexity Low_complexity 1 84 0 438 301 161 8 chr1 240799992 240800228 -41393436 + HAL1 LINE L1 887 1158 -1349 603 279 82 49 chr1 240800257 240800647 -41393017 + HAL1 LINE L1 1625 2027 -480 32 81 0 0 chr1 240800729 240800803 -41392861 + AT_rich Low_complexity Low_complexity 1 74 0 269 277 40 74 chr1 240800804 240801100 -41392564 + L1ME LINE L1 5297 5582 -584 304 70 0 0 chr1 240801437 240801480 -41392184 + MADE1 DNA Mariner 1 43 -37 46 54 0 0 chr1 240802683 240802757 -41390907 + AT_rich Low_complexity Low_complexity 1 74 0 202 124 31 54 chr1 240802819 240802948 -41390716 + (TA)n Simple_repeat Simple_repeat 1 126 0 3979 96 105 3 chr1 240803186 240803788 -41389876 + MER4A LTR ERV1 2 664 0 568 179 132 0 chr1 240804380 240804519 -41389145 - MER3 DNA MER1_type -5 204 48 353 263 12 0 chr1 240804555 240804635 -41389029 + MER5A DNA MER1_type 9 89 -100 279 366 36 26 chr1 240804938 240805132 -41388532 - MIR SINE MIR -3 259 64 22 0 0 0 chr1 240805575 240805597 -41388067 + AT_rich Low_complexity Low_complexity 1 22 0 3969 88 4 14 chr1 240805679 240806239 -41387425 - MER41A LTR ERV1 0 554 1 199 312 96 40 chr1 240806532 240806634 -41387030 + L3 LINE CR1 1259 1371 -206 2148 123 0 7 chr1 240806634 240806943 -41386721 - AluSg SINE Alu -3 307 1 199 312 96 40 chr1 240806943 240806965 -41386699 + L3 LINE CR1 1371 1390 -187 2957 244 43 26 chr1 240807387 240808328 -41385336 + L1ME1 LINE L1 4398 5463 -703 1761 187 15 18 chr1 240808328 240808671 -41384993 + MER61A LTR ERV1 2 343 0 2957 244 43 26 chr1 240808671 240809383 -41384281 + L1ME1 LINE L1 5463 6161 -5 340 332 78 48 chr1 240809440 240809813 -41383851 - L3 LINE CR1 -2 1575 1192 322 363 0 0 chr1 240809815 240809917 -41383747 - L2 LINE L2 -8 3305 3204 209 364 78 31 chr1 240810017 240810146 -41383518 - L2 LINE L2 -199 3073 2939 816 203 101 14 chr1 240810146 240810353 -41383311 + LTR55 LTR ERV 1 225 -323 192 125 0 0 chr1 240810378 240810410 -41383254 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 277 197 45 0 chr1 240810415 240810481 -41383183 + LTR55 LTR ERV 242 310 -238 3435 163 35 11 chr1 240810558 240811190 -41382474 - MER39B LTR ERV1 -6 647 1 317 254 17 25 chr1 240811190 240811307 -41382357 + LTR55 LTR ERV 425 540 -8 24 0 0 0 chr1 240811363 240811387 -41382277 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr1 240811754 240811800 -41381864 + AT_rich Low_complexity Low_complexity 1 46 0 21 95 0 0 chr1 240811932 240811995 -41381669 + AT_rich Low_complexity Low_complexity 1 63 0 289 212 242 20 chr1 240812674 240812773 -41380891 - MIR SINE MIR -15 247 127 420 264 51 71 chr1 240813792 240814090 -41379574 + L1ME2 LINE L1 1378 1796 -5151 247 234 52 0 chr1 240814135 240814212 -41379452 + L1ME2 LINE L1 1830 1910 -5228 583 159 29 0 chr1 240814212 240814382 -41379282 + (TA)n Simple_repeat Simple_repeat 1 175 0 292 217 131 76 chr1 240814388 240814586 -41379078 + L1ME2 LINE L1 2273 2481 -4657 * 1608 235 156 40 chr1 240814583 240815528 -41378136 + L1ME2 LINE L1 5047 6100 -857 938 220 0 33 chr1 240815529 240815743 -41377921 + AluJo SINE Alu 88 294 -18 2106 253 77 41 chr1 240815746 240815848 -41377816 + L1ME2 LINE L1 6088 6185 -790 1888 163 69 69 chr1 240815848 240816266 -41377398 - MER47B DNA MER2_type 0 418 1 2106 253 77 41 chr1 240816266 240816359 -41377305 + L1ME2 LINE L1 6185 6273 -702 2393 94 3 0 chr1 240816359 240816666 -41376998 + AluSp SINE Alu 1 308 -5 2106 253 77 41 chr1 240816666 240817324 -41376340 + L1ME2 LINE L1 6273 6973 -2 258 303 0 45 chr1 240817858 240817947 -41375717 - L2 LINE L2 -6 3307 3223 1997 137 0 3 chr1 240818759 240819084 -41374580 - AluSx SINE Alu 0 324 1 227 314 35 35 chr1 240819652 240819738 -41373926 - L2 LINE L2 -30 3242 3157 2205 70 0 58 chr1 240819826 240820158 -41373506 - AluY SINE Alu 0 311 1 22 0 0 0 chr1 240820305 240820327 -41373337 + AT_rich Low_complexity Low_complexity 1 22 0 213 205 0 0 chr1 240820601 240820640 -41373024 + (TG)n Simple_repeat Simple_repeat 2 40 0 928 309 104 37 chr1 240820782 240821290 -41372374 + MLT1H1 LTR MaLR 8 549 -6 363 243 44 40 chr1 240822042 240822191 -41371473 - MLT1H LTR MaLR -234 189 57 1666 307 179 17 chr1 240822232 240823324 -41370340 - L2 LINE L2 -341 2973 1705 24 32 0 0 chr1 240824261 240824292 -41369372 + AT_rich Low_complexity Low_complexity 1 31 0 1616 194 17 7 chr1 240824324 240824613 -41369051 - AluJb SINE Alu -17 295 4 4651 130 41 39 chr1 240825043 240825867 -41367797 - LTR12 LTR ERV1 0 826 1 906 224 35 48 chr1 240826053 240826343 -41367321 - pTR5 LTR ERV1 -1410 1028 743 2132 94 0 17 chr1 240826357 240826677 -41366987 - AluY SINE Alu 0 315 1 234 236 67 79 chr1 240826688 240826853 -41366811 - L1MEd LINE L1 -4969 1150 988 207 204 0 0 chr1 240826854 240826903 -41366761 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 1604 165 74 52 chr1 240827241 240827738 -41365926 - LTR1B LTR ERV1 0 826 261 782 285 31 8 chr1 240827761 240828021 -41365643 + L1M4 LINE L1 4009 4274 -1872 1344 138 0 0 chr1 240828023 240828211 -41365453 + AluSx SINE Alu 1 188 -124 952 161 90 63 chr1 240828211 240828434 -41365230 - LTR1B LTR ERV1 -597 229 1 232 340 156 49 chr1 240828476 240828926 -41364738 - L1MEd LINE L1 -5489 630 133 21 0 0 0 chr1 240829013 240829034 -41364630 + AT_rich Low_complexity Low_complexity 1 21 0 261 98 0 0 chr1 240829719 240829760 -41363904 + (TG)n Simple_repeat Simple_repeat 2 42 0 246 81 0 0 chr1 240829815 240829852 -41363812 + (TG)n Simple_repeat Simple_repeat 2 38 0 182 167 0 0 chr1 240830498 240830528 -41363136 + L2 LINE L2 3274 3303 -10 1264 131 4 52 chr1 240830911 240831140 -41362524 - AluSq SINE Alu -26 287 70 647 159 9 9 chr1 240831240 240831353 -41362311 - AluSq/x SINE Alu -200 113 1 1286 247 38 56 chr1 240832958 240833501 -41360163 - MLT1E3 LTR MaLR -16 608 5 29 70 0 0 chr1 240834199 240834256 -41359408 + AT_rich Low_complexity Low_complexity 1 57 0 246 350 50 25 chr1 240834273 240834433 -41359231 - MIR3 SINE MIR -28 180 17 27 0 0 0 chr1 240834712 240834739 -41358925 + AT_rich Low_complexity Low_complexity 1 27 0 313 240 50 20 chr1 240834821 240834921 -41358743 - L1ME4a LINE L1 -11 6110 6008 1805 146 11 11 chr1 240835031 240835318 -41358346 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr1 240835318 240835339 -41358325 + AT_rich Low_complexity Low_complexity 1 21 0 343 261 29 51 chr1 240835372 240835510 -41358154 - L1ME4a LINE L1 -302 5819 5685 690 268 61 43 chr1 240835736 240835967 -41357697 - MIR SINE MIR -10 252 18 1915 136 10 14 chr1 240836207 240836501 -41357163 - AluSx SINE Alu -19 293 1 1244 99 6 0 chr1 240836674 240836836 -41356828 + AluSp SINE Alu 134 296 -17 28 71 0 0 chr1 240836897 240836953 -41356711 + AT_rich Low_complexity Low_complexity 1 56 0 203 171 0 0 chr1 240837756 240837791 -41355873 + (CATATA)n Simple_repeat Simple_repeat 3 37 0 592 324 54 20 chr1 240840168 240840464 -41353200 - LTR16B LTR ERVL -13 451 146 1981 361 57 25 chr1 240840716 240841774 -41351890 - HERVL LTR ERVL -376 5278 4134 2379 112 120 5 chr1 240841774 240842158 -41351506 + MSTA LTR MaLR 1 428 0 1981 361 57 25 chr1 240842158 240842959 -41350705 - HERVL LTR ERVL -1520 4134 3360 2321 313 108 59 chr1 240842963 240843569 -41350095 - HERVL LTR ERVL -2406 2590 2015 1536 211 50 67 chr1 240843569 240843972 -41349692 + MSTD LTR MaLR 1 396 0 2321 313 108 59 chr1 240843972 240844948 -41348716 - HERVL LTR ERVL -2981 2015 930 1119 333 57 47 chr1 240845011 240845834 -41347830 - HERVL LTR ERVL -4158 838 8 331 245 9 47 chr1 240845847 240845953 -41347711 - LTR16B LTR ERVL 0 464 363 307 288 0 0 chr1 240845978 240846044 -41347620 - LTR16B LTR ERVL -398 66 1 466 306 34 7 chr1 240846054 240846201 -41347463 - MIR SINE MIR -105 157 7 1005 224 55 76 chr1 240846257 240846600 -41347064 + MLT1B LTR MaLR 1 336 -54 1476 102 26 146 chr1 240846600 240846943 -41346721 + AluSx SINE Alu 1 302 0 449 149 0 0 chr1 240846952 240847026 -41346638 + MLT1B LTR MaLR 317 390 0 182 36 0 36 chr1 240847550 240847578 -41346086 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 519 151 0 0 chr1 240848540 240848633 -41345031 + (TG)n Simple_repeat Simple_repeat 2 94 0 253 81 0 0 chr1 240848633 240848660 -41345004 + (TA)n Simple_repeat Simple_repeat 1 30 -7 2271 76 45 0 chr1 240848660 240848950 -41344714 - AluSp SINE Alu -10 303 1 253 81 0 0 chr1 240848950 240848959 -41344705 + (TA)n Simple_repeat Simple_repeat 29 37 0 580 274 126 71 chr1 240849023 240849662 -41344002 + L1M4 LINE L1 2932 3605 -2541 1083 193 75 42 chr1 240850636 240850968 -41342696 + MLT2C1 LTR ERVL 1 343 -54 195 257 0 0 chr1 240850969 240851043 -41342621 + (TG)n Simple_repeat Simple_repeat 1 74 0 15788 136 24 16 chr1 240851213 240851856 -41341808 - Tigger2 DNA MER2_type -1 2717 2080 2113 146 0 0 chr1 240851856 240852150 -41341514 - AluSx SINE Alu -18 294 1 15788 136 24 16 chr1 240852150 240854201 -41339463 - Tigger2 DNA MER2_type -638 2080 2 213 275 284 0 chr1 240855295 240855404 -41338260 + MIR SINE MIR 73 212 -50 2151 137 19 30 chr1 240855584 240855948 -41337716 - THE1B LTR MaLR 0 364 5 24 0 0 0 chr1 240857096 240857120 -41336544 + AT_rich Low_complexity Low_complexity 1 24 0 217 296 17 35 chr1 240857323 240857438 -41336226 + L2 LINE L2 2652 2764 -550 383 343 80 64 chr1 240857551 240857989 -41335675 + L2 LINE L2 2828 3272 0 279 371 31 44 chr1 240857987 240858216 -41335448 - L3 LINE CR1 -1000 577 352 * 1147 22 0 0 chr1 240858466 240858604 -41335060 - L1PA4 LINE L1 -3 6152 6015 298 185 0 31 chr1 240859176 240859241 -41334423 - MSTB1 LTR MaLR -287 145 83 388 254 254 35 chr1 240859307 240859344 -41334320 - L2 LINE L2 -759 2555 2527 1934 147 0 0 chr1 240859344 240859623 -41334041 + AluSx SINE Alu 16 294 -18 388 254 254 35 chr1 240859623 240859869 -41333795 - L2 LINE L2 -787 2527 2210 219 88 0 0 chr1 240860654 240860688 -41332976 + (TTTTA)n Simple_repeat Simple_repeat 3 36 0 263 192 0 0 chr1 240860934 240860986 -41332678 - AluS SINE Alu -23 277 226 1140 161 68 38 chr1 240861093 240861385 -41332279 - AluY SINE Alu 0 301 1 459 125 0 0 chr1 240861535 240861607 -41332057 + (GGAA)n Simple_repeat Simple_repeat 3 74 0 1873 233 24 88 chr1 240861912 240862504 -41331160 + MLT2B3 LTR ERVL 1 554 0 2316 103 3 6 chr1 240862519 240862830 -41330834 - AluSp SINE Alu -2 311 2 335 325 69 23 chr1 240863714 240863958 -41329706 + L2 LINE L2 2796 3035 -237 2007 159 0 0 chr1 240864112 240864408 -41329256 + AluSx SINE Alu 1 296 -16 698 122 32 0 chr1 240864447 240864570 -41329094 + MSTB1 LTR MaLR 1 127 -305 2038 167 50 19 chr1 240864689 240865108 -41328556 + MSTB1 LTR MaLR 1 432 0 4055 231 88 72 chr1 240865110 240866499 -41327165 + MSTB1-int LTR MaLR 3 1422 -158 180 0 0 0 chr1 240866499 240866519 -41327145 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4055 231 88 72 chr1 240866519 240866681 -41326983 + MSTB1-int LTR MaLR 1422 1580 0 1604 171 19 15 chr1 240866681 240867054 -41326610 + MSTB1 LTR MaLR 1 432 0 1037 178 26 0 chr1 240867934 240868125 -41325539 - MSTB1 LTR MaLR -143 289 94 473 288 86 17 chr1 240918179 240918412 -41275252 + HAL1 LINE L1 2226 2474 -33 22 35 0 0 chr1 240918416 240918445 -41275219 + AT_rich Low_complexity Low_complexity 1 29 0 2439 82 13 0 chr1 240918466 240918772 -41274892 - AluSg SINE Alu 0 310 1 688 197 48 108 chr1 240919703 240919952 -41273712 + MER106A DNA MER1_type 3 236 0 2107 67 4 0 chr1 240920257 240920525 -41273139 - AluY SINE Alu -9 302 34 216 196 22 0 chr1 240921045 240921091 -41272573 + L2 LINE L2 3267 3313 0 355 176 15 0 chr1 240921297 240921365 -41272299 + AluJ/FLAM SINE Alu 1 69 -233 1179 189 69 45 chr1 240921686 240922020 -41271644 + MER2 DNA MER2_type 3 344 0 386 214 101 0 chr1 240922240 240922329 -41271335 + L2 LINE L2 3205 3302 -11 321 343 41 24 chr1 240922740 240922909 -41270755 + MER5A DNA MER1_type 15 186 -3 537 132 0 0 chr1 240922925 240923007 -41270657 + (GA)n Simple_repeat Simple_repeat 1 85 -6 2323 56 28 3 chr1 240923007 240923292 -41270372 + AluY SINE Alu 3 294 -17 537 132 0 0 chr1 240923292 240923300 -41270364 + (GA)n Simple_repeat Simple_repeat 84 91 0 1309 40 23 0 chr1 240923300 240923474 -41270190 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 357 43 0 0 chr1 240923701 240923748 -41269916 + (TA)n Simple_repeat Simple_repeat 2 48 0 930 210 105 0 chr1 240924790 240924990 -41268674 - MER58A DNA MER1_type -3 221 1 358 309 112 26 chr1 240925565 240925953 -41267711 + L1ME LINE L1 4197 4615 -1531 186 150 0 0 chr1 240926133 240926173 -41267491 + (A)n Simple_repeat Simple_repeat 1 40 0 269 276 17 26 chr1 240926320 240926436 -41267228 + L1ME LINE L1 5467 5581 -540 2409 93 0 3 chr1 240926708 240927020 -41266644 + AluY SINE Alu 1 311 0 2341 88 0 3 chr1 240927407 240927701 -41265963 + AluSg SINE Alu 1 293 -17 532 291 161 14 chr1 240928201 240928424 -41265240 + MIR SINE MIR 2 257 -5 1392 210 7 4 chr1 240928895 240929171 -41264493 + AluJo SINE Alu 6 282 -30 1032 200 0 6 chr1 240931049 240931224 -41262440 + FAM SINE Alu 1 174 -1 207 137 59 20 chr1 240931947 240931998 -41261666 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1190 221 156 41 chr1 240932195 240932611 -41261053 - MLT1D LTR MaLR -41 464 1 236 329 73 37 chr1 240932692 240932856 -41260808 - L3 LINE CR1 -150 1427 1258 492 290 35 39 chr1 240934112 240934343 -41259321 - LTR16B LTR ERVL -13 451 222 2560 239 92 16 chr1 240934391 240935131 -41258533 - MER21B LTR ERV1 -48 815 20 4020 153 45 50 chr1 240935131 240935474 -41258190 + Tigger3b DNA MER2_type 1 344 -2684 1827 123 4 0 chr1 240935474 240935725 -41257939 - AluSp SINE Alu -61 252 1 4020 153 45 50 chr1 240935725 240936285 -41257379 + Tigger3b DNA MER2_type 344 900 -331 1116 184 198 31 chr1 240936272 240936626 -41257038 - LOR1b LTR ERV1 -48 413 1 * 2005 151 29 6 chr1 240936628 240936979 -41256685 + Tigger3b DNA MER2_type 873 1231 0 530 268 55 21 chr1 240937497 240937696 -41255968 + MIR SINE MIR 41 238 -24 555 284 139 15 chr1 240940300 240940501 -41253163 - MIR SINE MIR -5 257 32 221 247 118 0 chr1 240943676 240943761 -41249903 + MIR SINE MIR 137 231 -31 285 212 146 7 chr1 240944136 240944273 -41249391 - L1ME4a LINE L1 -2 6119 5964 959 217 5 0 chr1 240944324 240944536 -41249128 - L1MB1 LINE L1 -62 6106 5894 2217 125 0 10 chr1 240944582 240944886 -41248778 + AluSx SINE Alu 1 301 -11 571 289 60 8 chr1 240945164 240945399 -41248265 + MLT1H1 LTR MaLR 1 247 -308 406 213 0 0 chr1 240946328 240946403 -41247261 - MER8 DNA MER2_type 0 239 165 1921 180 16 58 chr1 240946426 240946572 -41247092 + Tigger2 DNA MER2_type 2303 2454 -264 2270 113 0 3 chr1 240946572 240946882 -41246782 - AluSx SINE Alu -3 309 1 1921 180 16 58 chr1 240946882 240947169 -41246495 + Tigger2 DNA MER2_type 2454 2718 0 24 53 0 0 chr1 240947190 240947228 -41246436 + AT_rich Low_complexity Low_complexity 1 38 0 733 189 8 0 chr1 240947228 240947350 -41246314 - FLAM_C SINE Alu -20 123 1 214 342 62 39 chr1 240947374 240947564 -41246100 - MIR3 SINE MIR -57 205 14 21 36 0 0 chr1 240947802 240947830 -41245834 + AT_rich Low_complexity Low_complexity 1 28 0 2322 86 0 0 chr1 240947894 240948186 -41245478 - AluSg SINE Alu -18 292 1 217 229 164 0 chr1 240950087 240950148 -41243516 + L2 LINE L2 3151 3221 -51 2163 113 0 10 chr1 240950289 240950591 -41243073 - AluSx SINE Alu -9 303 5 1323 212 33 43 chr1 240950772 240951169 -41242495 + MLT1C LTR MaLR 65 457 -10 2076 236 35 34 chr1 240952001 240952684 -41240980 - MER76 LTR ERV 0 688 5 200 111 28 0 chr1 240952690 240952726 -41240938 + T-rich Low_complexity Low_complexity 4 40 0 1251 85 11 0 chr1 240953305 240953482 -41240182 + L1PA10 LINE L1 5835 6013 -155 1323 126 5 0 chr1 240953584 240953782 -41239882 + L1PA10 LINE L1 5969 6167 -1 273 231 153 48 chr1 240953782 240954077 -41239587 + L1MC/D LINE L1 4751 5076 -1070 22 0 0 0 chr1 240954472 240954494 -41239170 + AT_rich Low_complexity Low_complexity 1 22 0 351 329 136 5 chr1 240954979 240955192 -41238472 + L1MC/D LINE L1 5344 5584 -2224 206 258 22 67 chr1 240955384 240955473 -41238191 + L2 LINE L2 3227 3311 -2 473 16 0 33 chr1 240956405 240956466 -41237198 - AluY SINE Alu -181 130 72 1975 132 0 6 chr1 240956466 240956785 -41236879 - THE1C LTR MaLR -58 317 1 970 329 34 22 chr1 240957260 240957335 -41236329 - L2 LINE L2 -3 3310 3237 216 0 0 0 chr1 240957335 240957359 -41236305 + (TC)n Simple_repeat Simple_repeat 2 25 0 970 329 34 22 chr1 240957359 240957700 -41235964 - L2 LINE L2 -76 3237 2889 2186 92 3 30 chr1 240958587 240958890 -41234774 + AluSg SINE Alu 1 295 -15 275 309 31 0 chr1 240959360 240959457 -41234207 + L2 LINE L2 3153 3252 -20 224 238 16 48 chr1 240960648 240960711 -41232953 + MER5A DNA MER1_type 20 80 -109 279 0 0 0 chr1 240960902 240960933 -41232731 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 118 0 0 chr1 240961308 240961342 -41232322 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 594 352 141 5 chr1 240961346 240961744 -41231920 - L2 LINE L2 -37 3276 2825 1046 209 34 20 chr1 240961766 240962058 -41231606 + MER33 DNA MER1_type 1 296 -28 2248 116 22 6 chr1 240962219 240962574 -41231090 - THE1C LTR MaLR -12 363 3 628 265 81 38 chr1 240962576 240963097 -41230567 - HAL1 LINE L1 -1212 1295 753 252 86 0 0 chr1 240963413 240963448 -41230216 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 360 45 16 chr1 240964540 240964851 -41228813 + LTR16C LTR ERVL 164 483 -8 417 350 56 17 chr1 240965048 240965228 -41228436 + MIR3 SINE MIR 19 205 -3 1346 147 3 89 chr1 240966311 240966646 -41227018 + AluSx SINE Alu 16 325 0 1792 251 81 33 chr1 240967822 240968467 -41225197 + L1ME1 LINE L1 5357 6032 -134 * 4921 108 22 0 chr1 240968461 240969228 -41224436 - L1PA13 LINE L1 -3 6160 5377 2266 63 3 0 chr1 240969244 240969530 -41224134 + L1PA7 LINE L1 5867 6153 -1 2232 100 3 10 chr1 240970496 240970795 -41222869 + AluSp SINE Alu 1 297 -16 663 197 0 24 chr1 240970904 240971031 -41222633 - FLAM_A SINE Alu -8 125 2 389 301 130 62 chr1 240971031 240971386 -41222278 + MLT1J LTR MaLR 11 389 -122 279 213 0 0 chr1 240972164 240972239 -41221425 + L1M4 LINE L1 4479 4553 -1593 1789 221 35 25 chr1 240972863 240973346 -41220318 + LTR33 LTR ERVL 33 520 -1 210 71 0 0 chr1 240974026 240974054 -41219610 + (T)n Simple_repeat Simple_repeat 1 28 0 634 247 6 12 chr1 240974071 240974233 -41219431 + MER63A DNA MER1_type 1 161 0 923 9 0 0 chr1 240974233 240974343 -41219321 - L1P2 LINE L1 -567 5588 5479 1269 38 5 75 chr1 240974346 240974532 -41219132 + L1PA4 LINE L1 5982 6154 -1 300 220 0 0 chr1 240974556 240974615 -41219049 + MER63A DNA MER1_type 152 210 0 256 318 0 0 chr1 240975146 240975209 -41218455 + L2 LINE L2 3210 3272 0 2110 125 0 0 chr1 240975509 240975796 -41217868 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr1 240975815 240975836 -41217828 + AT_rich Low_complexity Low_complexity 1 21 0 316 204 41 0 chr1 240976029 240976127 -41217537 + GA-rich Low_complexity Low_complexity 2 103 0 202 300 0 0 chr1 240976163 240976213 -41217451 + GA-rich Low_complexity Low_complexity 3 52 0 24 32 0 0 chr1 240976439 240976470 -41217194 + AT_rich Low_complexity Low_complexity 1 31 0 29 43 0 43 chr1 240976651 240976680 -41216984 + AT_rich Low_complexity Low_complexity 1 30 -36 1917 91 42 4 chr1 240976680 240976945 -41216719 + AluSx SINE Alu 1 275 -37 29 43 0 43 chr1 240976945 240976984 -41216680 + AT_rich Low_complexity Low_complexity 30 66 0 232 241 0 0 chr1 240977752 240977806 -41215858 - L1ME LINE L1 -626 5536 5483 429 311 14 7 chr1 240978101 240978249 -41215415 + MER69A DNA AcHobo 29 177 0 319 286 57 9 chr1 240978256 240978361 -41215303 - L3 LINE CR1 0 1577 1468 205 241 51 51 chr1 240978395 240978474 -41215190 + MIR SINE MIR 111 189 -73 202 341 80 36 chr1 240978556 240978694 -41214970 - L3 LINE CR1 -97 1480 1337 2274 106 0 7 chr1 240978762 240979064 -41214600 - AluSx SINE Alu -12 300 1 501 248 64 46 chr1 240979497 240979715 -41213949 - L1ME3 LINE L1 -9 6222 6001 628 212 61 24 chr1 240979747 240979959 -41213705 - L1ME3 LINE L1 -1307 4908 4689 412 288 35 18 chr1 240979970 240980199 -41213465 - L1ME3 LINE L1 -4128 2268 2036 493 274 113 38 chr1 240980329 240980782 -41212882 - L1ME3 LINE L1 -4576 1820 1334 902 165 76 0 chr1 240980782 240980940 -41212724 - THE1B LTR MaLR 0 364 195 191 360 73 22 chr1 240981109 240981245 -41212419 + L2 LINE L2 3107 3249 -23 1397 180 4 16 chr1 240981287 240981543 -41212121 + AluJo SINE Alu 35 287 -25 375 242 135 51 chr1 240981570 240981785 -41211879 - L1ME4a LINE L1 -7 6114 5882 2188 98 0 0 chr1 240982315 240982602 -41211062 + AluY SINE Alu 1 287 -24 361 138 21 0 chr1 240982602 240982696 -41210968 + (TA)n Simple_repeat Simple_repeat 1 96 0 2345 91 0 7 chr1 240983165 240983462 -41210202 - AluSx SINE Alu -17 295 1 2357 77 3 10 chr1 240984278 240984590 -41209074 - AluSg SINE Alu 0 310 1 222 150 0 0 chr1 240984969 240985009 -41208655 + (TC)n Simple_repeat Simple_repeat 1 40 0 448 213 49 41 chr1 240985026 240985148 -41208516 + L2 LINE L2 3191 3313 0 379 324 87 91 chr1 240985116 240985566 -41208098 - L2 LINE L2 -8 3264 2817 * 4155 91 3 7 chr1 240985702 240986295 -41207369 + L1PB1 LINE L1 5561 6151 0 186 198 89 109 chr1 240986395 240986496 -41207168 - L2 LINE L2 -812 2502 2404 657 313 42 46 chr1 240989316 240989999 -41203665 + L1MCc LINE L1 1171 1855 -5086 1665 194 0 3 chr1 240989999 240990288 -41203376 + AluSx SINE Alu 1 288 -24 360 0 0 0 chr1 240990289 240990329 -41203335 + (CA)n Simple_repeat Simple_repeat 1 40 0 657 313 42 46 chr1 240990329 240990587 -41203077 + L1MCc LINE L1 1854 2117 -4824 3274 153 18 3 chr1 240990610 240991178 -41202486 - MER7C DNA MER2_type -13 589 14 410 298 84 13 chr1 240991193 240991418 -41202246 + L1MCc LINE L1 2314 2554 -4568 347 299 119 21 chr1 240991546 240991643 -41202021 - MIR SINE MIR 0 262 176 2502 77 0 6 chr1 240991643 240991956 -41201708 - AluY SINE Alu 0 311 1 347 299 119 21 chr1 240991956 240992052 -41201612 - MIR SINE MIR -86 176 50 227 295 49 33 chr1 240992090 240992273 -41201391 + L1MC/D LINE L1 5704 5889 -1919 212 311 0 0 chr1 240992298 240992359 -41201305 + (CATA)n Simple_repeat Simple_repeat 4 64 0 310 143 79 0 chr1 240993231 240993294 -41200370 - THE1B LTR MaLR -296 68 1 367 19 19 19 chr1 240993344 240993397 -41200267 + (TC)n Simple_repeat Simple_repeat 2 54 0 325 249 144 10 chr1 240993594 240993657 -41200007 - L1MEc LINE L1 -5465 931 878 633 27 0 0 chr1 240993657 240993732 -41199932 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 325 249 144 10 chr1 240993732 240993869 -41199795 - L1MEc LINE L1 -5518 878 704 365 330 65 82 chr1 240994017 240994553 -41199111 - L1MEc LINE L1 -5835 561 35 512 351 142 25 chr1 240994571 240995163 -41198501 - L3 LINE CR1 -709 868 208 264 234 11 43 chr1 240995851 240995945 -41197719 + T-rich Low_complexity Low_complexity 4 94 0 447 52 0 0 chr1 240996091 240996149 -41197515 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 396 0 0 0 chr1 240996226 240996270 -41197394 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 174 0 0 chr1 240996878 240996924 -41196740 + GA-rich Low_complexity Low_complexity 1 46 0 1653 128 4 4 chr1 240997254 240997489 -41196175 - AluSq SINE Alu -78 235 1 394 77 231 0 chr1 240999736 240999801 -41193863 - MADE1 DNA Mariner 0 80 1 184 358 119 8 chr1 241000097 241000231 -41193433 - L2 LINE L2 -1385 1929 1781 2295 86 3 3 chr1 241001025 241001317 -41192347 - AluSc SINE Alu -17 292 1 319 336 148 22 chr1 241001554 241001783 -41191881 + L1ME LINE L1 5342 5599 -522 651 262 117 44 chr1 241002568 241003072 -41190592 - L1ME4a LINE L1 -47 6074 5534 585 246 0 0 chr1 241003241 241003355 -41190309 + FRAM SINE Alu 1 114 -62 1024 164 0 17 chr1 241003355 241003532 -41190132 + AluJo SINE Alu 85 258 -54 382 307 148 5 chr1 241003759 241003948 -41189716 + MIR SINE MIR 17 232 -30 22 56 0 0 chr1 241003988 241004024 -41189640 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 241004252 241004276 -41189388 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 241004607 241004631 -41189033 + AT_rich Low_complexity Low_complexity 1 24 0 2228 75 0 0 chr1 241005123 241005403 -41188261 - AluY SINE Alu -2 309 30 217 238 25 25 chr1 241005485 241005565 -41188099 - MIR SINE MIR -3 259 180 213 314 111 26 chr1 241006056 241006209 -41187455 - MIR SINE MIR -29 233 68 2223 111 0 3 chr1 241006383 241006690 -41186974 - AluY SINE Alu -3 308 3 189 0 0 0 chr1 241010851 241010872 -41182792 + (CA)n Simple_repeat Simple_repeat 2 22 0 203 179 0 0 chr1 241011591 241011630 -41182034 + A-rich Low_complexity Low_complexity 1 39 0 2056 115 31 0 chr1 241013752 241014039 -41179625 - AluSx SINE Alu -14 298 3 236 240 74 120 chr1 241014177 241014352 -41179312 + MIR SINE MIR 89 255 -7 590 339 35 45 chr1 241015491 241015801 -41177863 + L2 LINE L2 2966 3272 0 2444 163 24 2 chr1 241017054 241017471 -41176193 - MSTB LTR MaLR 0 426 1 868 164 0 0 chr1 241017522 241017656 -41176008 + FRAM SINE Alu 1 133 -43 214 350 100 20 chr1 241018598 241018698 -41174966 - MIR SINE MIR -56 152 45 23 33 0 0 chr1 241019137 241019167 -41174497 + AT_rich Low_complexity Low_complexity 1 30 0 1339 184 83 117 chr1 241019440 241019900 -41173764 - MER66A LTR ERV1 0 478 97 2591 102 33 0 chr1 241020148 241020539 -41173125 - L1PA10 LINE L1 0 6168 5765 444 304 134 5 chr1 241021203 241021404 -41172260 + MIR SINE MIR 36 262 0 237 314 145 8 chr1 241021918 241022042 -41171622 + MIR SINE MIR 57 197 -65 306 0 0 0 chr1 241022116 241022150 -41171514 + (TG)n Simple_repeat Simple_repeat 2 35 0 183 341 155 8 chr1 241024847 241024976 -41168688 - L2 LINE L2 -181 3091 2944 193 340 0 0 chr1 241024987 241025034 -41168630 - L2 LINE L2 -2 3270 3224 307 211 0 0 chr1 241025147 241025204 -41168460 + MLT1L LTR MaLR 7 63 -532 2661 89 17 25 chr1 241025245 241025651 -41168013 + L1PB1 LINE L1 2302 2704 -4159 941 26 17 0 chr1 241025650 241025767 -41167897 - L1P LINE L1 -2119 4027 3909 * 3703 50 7 0 chr1 241025767 241026230 -41167434 + L1PA4 LINE L1 5689 6154 -1 14421 179 16 13 chr1 241026247 241026315 -41167349 + L1PB1 LINE L1 2735 2801 -4066 180 0 0 0 chr1 241026315 241026335 -41167329 + (CAA)n Simple_repeat Simple_repeat 2 21 0 14421 179 16 13 chr1 241026335 241027177 -41166487 + L1PB1 LINE L1 2801 3639 -3228 2217 89 10 10 chr1 241027177 241027468 -41166196 + AluY SINE Alu 1 291 -20 14421 179 16 13 chr1 241027468 241030667 -41162997 + L1PB1 LINE L1 3639 6859 -8 182 270 63 0 chr1 241030704 241030767 -41162897 + MIR SINE MIR 81 147 -61 432 0 0 0 chr1 241030863 241030911 -41162753 + (ATG)n Simple_repeat Simple_repeat 2 49 0 1879 158 72 23 chr1 241030911 241031258 -41162406 + THE1B LTR MaLR 1 364 0 10965 106 19 1 chr1 241031258 241032809 -41160855 + THE1B-int LTR MaLR 1 1580 0 1958 130 73 45 chr1 241032809 241033163 -41160501 + THE1B LTR MaLR 1 364 0 2077 101 11 4 chr1 241035409 241035687 -41157977 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr1 241035687 241035708 -41157956 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 340 328 40 11 chr1 241035824 241036001 -41157663 + MLT1L LTR MaLR 145 326 -289 2145 118 3 0 chr1 241036142 241036439 -41157225 - AluSp SINE Alu -15 298 1 321 276 10 10 chr1 241038167 241038265 -41155399 + CT-rich Low_complexity Low_complexity 3 100 0 433 331 72 75 chr1 241038266 241038680 -41154984 - L1MEd LINE L1 -5705 414 2 4433 232 29 10 chr1 241038904 241040305 -41153359 - L1MC/D LINE L1 -766 5380 4063 21 0 0 0 chr1 241040911 241040932 -41152732 + AT_rich Low_complexity Low_complexity 1 21 0 273 128 0 0 chr1 241041623 241041670 -41151994 + (TC)n Simple_repeat Simple_repeat 1 47 0 289 351 139 0 chr1 241041897 241042048 -41151616 + MIR SINE MIR 84 255 -7 256 255 54 98 chr1 241042128 241042262 -41151402 + MIR SINE MIR 51 176 -86 3277 153 8 13 chr1 241042262 241042792 -41150872 + MER1A DNA MER1_type 1 527 0 256 255 54 98 chr1 241042792 241042841 -41150823 + MIR SINE MIR 176 226 -36 474 266 85 22 chr1 241042844 241043040 -41150624 - MIR SINE MIR -33 229 20 1988 106 0 0 chr1 241043453 241043738 -41149926 + AluSg SINE Alu 29 313 0 2283 55 0 0 chr1 241045341 241045616 -41148048 - AluY SINE Alu -2 309 35 2231 169 36 5 chr1 241045864 241046279 -41147385 + MSTA LTR MaLR 1 428 0 1154 187 5 0 chr1 241047408 241047617 -41146047 - MER2 DNA MER2_type -135 210 1 261 0 0 0 chr1 241047624 241047653 -41146011 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1161 288 96 79 chr1 241047655 241048186 -41145478 + MLT1F LTR MaLR 49 535 -7 255 208 26 26 chr1 241048748 241048825 -41144839 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 23 0 0 0 chr1 241048933 241048956 -41144708 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr1 241049500 241049523 -41144141 + AT_rich Low_complexity Low_complexity 1 23 0 23 101 0 0 chr1 241050498 241050577 -41143087 + AT_rich Low_complexity Low_complexity 1 79 0 1269 201 92 4 chr1 241050688 241050961 -41142703 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr1 241051064 241051086 -41142578 + AT_rich Low_complexity Low_complexity 1 22 0 631 269 17 6 chr1 241051451 241051626 -41142038 + MER5B DNA MER1_type 1 177 -1 1593 184 30 16 chr1 241052449 241052753 -41140911 + AluJo SINE Alu 1 308 -4 433 243 116 63 chr1 241052764 241052953 -41140711 - MIR SINE MIR -49 213 15 243 361 88 40 chr1 241053013 241053287 -41140377 + L2 LINE L2 2813 3099 -173 434 288 93 7 chr1 241053302 241053472 -41140192 + MIR SINE MIR 60 241 -21 2127 140 0 0 chr1 241054223 241054531 -41139133 + AluSx SINE Alu 1 308 -4 2245 105 7 3 chr1 241054941 241055265 -41138399 + AluSx SINE Alu 1 325 0 2423 41 0 21 chr1 241055493 241055807 -41137857 - AluY SINE Alu 0 308 1 1099 218 58 17 chr1 241056044 241056651 -41137013 + L1M4 LINE L1 1381 2022 -4833 910 207 62 4 chr1 241056710 241056771 -41136893 + L1M4 LINE L1 5422 5478 -1479 237 65 0 0 chr1 241056771 241056802 -41136862 + (TAA)n Simple_repeat Simple_repeat 3 33 0 910 207 62 4 chr1 241056802 241056967 -41136697 + L1M4 LINE L1 5478 5661 -1296 2270 106 0 0 chr1 241057244 241057555 -41136109 - AluY SINE Alu 0 311 1 2598 46 3 0 chr1 241057599 241057906 -41135758 - AluY SINE Alu -3 308 1 2188 92 7 0 chr1 241058023 241058315 -41135349 + AluSc SINE Alu 1 294 -15 2442 109 8 34 chr1 241058920 241059131 -41134533 - THE1C LTR MaLR 0 375 177 2065 130 20 0 chr1 241059131 241059432 -41134232 + AluSq SINE Alu 1 307 -6 2442 109 8 34 chr1 241059432 241059605 -41134059 - THE1C LTR MaLR -198 177 1 2052 141 7 0 chr1 241059719 241060010 -41133654 + AluSx SINE Alu 1 293 -19 320 223 85 54 chr1 241060355 241060485 -41133179 + MIR SINE MIR 120 253 -9 515 143 181 9 chr1 241060622 241060727 -41132937 - L2 LINE L2 -4 3309 3187 1594 160 165 5 chr1 241062879 241063248 -41130416 - MSTA LTR MaLR 0 428 1 194 358 128 20 chr1 241063505 241063709 -41129955 + MIR SINE MIR 36 261 -1 289 235 12 24 chr1 241063721 241063806 -41129858 + GA-rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr1 241064235 241064256 -41129408 + AT_rich Low_complexity Low_complexity 1 21 0 1698 187 17 47 chr1 241065214 241065301 -41128363 + MER7A DNA MER2_type 1 89 -2949 1647 156 59 10 chr1 241065301 241065589 -41128075 - AluJb SINE Alu -10 302 1 1698 187 17 47 chr1 241065589 241065860 -41127804 + MER7A DNA MER2_type 89 346 0 732 172 33 40 chr1 241066689 241066840 -41126824 + MER6 DNA MER2_type 1 150 -715 279 81 0 0 chr1 241066843 241066880 -41126784 + MER6 DNA MER2_type 829 865 0 2016 148 0 3 chr1 241067175 241067485 -41126179 - AluJb SINE Alu -3 309 1 22 35 0 0 chr1 241067856 241067885 -41125779 + AT_rich Low_complexity Low_complexity 1 29 0 301 351 139 19 chr1 241068180 241068388 -41125276 - MIR SINE MIR -18 244 12 2434 69 0 3 chr1 241069177 241069480 -41124184 - AluY SINE Alu -9 302 1 1448 184 65 3 chr1 241069480 241069773 -41123891 - MER58B DNA MER1_type -7 334 24 188 313 188 0 chr1 241070616 241070712 -41122952 + MIR SINE MIR 90 203 -59 1538 117 42 4 chr1 241070912 241071151 -41122513 + L1PB3 LINE L1 5905 6152 -2 261 317 88 23 chr1 241071906 241072077 -41121587 + MIR SINE MIR 38 214 -48 22 35 0 0 chr1 241072520 241072549 -41121115 + AT_rich Low_complexity Low_complexity 1 29 0 799 276 16 36 chr1 241072863 241073113 -41120551 + MIR SINE MIR 1 245 -17 202 254 182 18 chr1 241073145 241073200 -41120464 + MIR SINE MIR 22 85 -177 2324 111 48 20 chr1 241074567 241074919 -41118745 - THE1B LTR MaLR -2 362 1 1875 141 20 36 chr1 241075046 241075350 -41118314 + AluSx SINE Alu 1 299 -13 2391 84 3 25 chr1 241076814 241077134 -41116530 - AluSp SINE Alu 0 313 1 436 120 23 59 chr1 241077796 241078196 -41115468 + (TA)n Simple_repeat Simple_repeat 1 385 0 1079 209 51 0 chr1 241078204 241078300 -41115364 - AluJb SINE Alu -82 230 140 320 0 0 24 chr1 241078300 241078341 -41115323 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1079 209 51 0 chr1 241078341 241078459 -41115205 - AluJb SINE Alu -172 140 5 23 33 0 0 chr1 241078918 241078948 -41114716 + AT_rich Low_complexity Low_complexity 1 30 0 1643 174 4 4 chr1 241079573 241079838 -41113826 - AluSx SINE Alu -24 288 24 356 192 192 10 chr1 241079973 241080077 -41113587 - L2 LINE L2 0 3313 3191 231 36 0 0 chr1 241080125 241080153 -41113511 + (TG)n Simple_repeat Simple_repeat 1 28 0 23 68 0 0 chr1 241080185 241080229 -41113435 + AT_rich Low_complexity Low_complexity 1 44 0 2353 108 0 0 chr1 241080394 241080700 -41112964 - AluSg SINE Alu -4 306 1 2285 174 58 15 chr1 241081101 241081567 -41112097 + MER66B LTR ERV1 1 486 0 36 0 0 0 chr1 241082633 241082669 -41110995 + AT_rich Low_complexity Low_complexity 1 36 0 6044 97 54 0 chr1 241083152 241084075 -41109589 - L1PA10 LINE L1 -11 6157 5225 315 274 94 8 chr1 241084323 241084440 -41109224 + L2 LINE L2 2901 3027 -245 258 227 72 0 chr1 241086201 241086298 -41107366 - L1ME LINE L1 -264 5857 5754 246 174 0 0 chr1 241086334 241086380 -41107284 + (TA)n Simple_repeat Simple_repeat 2 47 0 749 296 72 82 chr1 241086476 241087114 -41106550 + L2 LINE L2 2301 2932 -382 342 281 70 38 chr1 241087342 241087527 -41106137 + L2 LINE L2 3123 3313 0 24 0 0 0 chr1 241088250 241088274 -41105390 + AT_rich Low_complexity Low_complexity 1 24 0 2214 110 10 0 chr1 241088280 241088581 -41105083 + AluSq SINE Alu 1 304 -9 1363 208 136 45 chr1 241090508 241090970 -41102694 - MLT1D LTR MaLR 0 505 2 1828 142 19 16 chr1 241091576 241091885 -41101779 - AluJo SINE Alu -2 310 1 717 156 25 8 chr1 241092869 241092991 -41100673 + FLAM_A SINE Alu 5 128 -5 2055 158 33 22 chr1 241093876 241094236 -41099428 + THE1B LTR MaLR 1 364 0 238 263 114 26 chr1 241094831 241094945 -41098719 + MIR SINE MIR 67 190 -72 2198 123 27 27 chr1 241095719 241096094 -41097570 + THE1C LTR MaLR 1 375 0 237 325 31 36 chr1 241096758 241096952 -41096712 + HAL1 LINE L1 644 836 -1671 481 227 50 35 chr1 241096988 241097129 -41096535 + HAL1 LINE L1 1278 1420 -1087 205 341 32 8 chr1 241097635 241097758 -41095906 - MIR SINE MIR -1 261 136 736 287 57 65 chr1 241099815 241100395 -41093269 + L2 LINE L2 2652 3222 -91 376 183 16 24 chr1 241100396 241100522 -41093142 + CT-rich Low_complexity Low_complexity 3 127 0 230 245 19 0 chr1 241100524 241100577 -41093087 + L2 LINE L2 3255 3308 -5 1639 195 10 48 chr1 241101473 241101888 -41091776 - L1MB2 LINE L1 -16 6155 5757 1585 186 17 20 chr1 241102133 241102248 -41091416 + AluJo SINE Alu 1 115 -197 402 21 0 0 chr1 241102248 241102295 -41091369 + (CA)n Simple_repeat Simple_repeat 2 48 0 1585 186 17 20 chr1 241102295 241102480 -41091184 + AluJo SINE Alu 115 300 -12 183 235 0 0 chr1 241102890 241102941 -41090723 + CT-rich Low_complexity Low_complexity 2 52 0 30 0 0 0 chr1 241102983 241103013 -41090651 + AT_rich Low_complexity Low_complexity 1 30 0 359 324 71 24 chr1 241104076 241104329 -41089335 + MARNA DNA Mariner 281 545 -41 198 325 46 77 chr1 241104377 241104571 -41089093 - MER5A DNA MER1_type 0 189 2 183 273 0 0 chr1 241104749 241104793 -41088871 + L2 LINE L2 3268 3311 -2 353 362 43 6 chr1 241104808 241104971 -41088693 - L3 LINE CR1 -1101 476 308 765 242 24 121 chr1 241105404 241105693 -41087971 - MIR SINE MIR 0 262 2 450 0 0 0 chr1 241105931 241105981 -41087683 + (CA)n Simple_repeat Simple_repeat 1 50 0 304 300 11 0 chr1 241106373 241106463 -41087201 + L1MC4 LINE L1 6614 6704 -1338 321 319 118 2 chr1 241106976 241107102 -41086562 - MIR SINE MIR -61 147 13 566 291 81 5 chr1 241107315 241107525 -41086139 - MIR SINE MIR -35 227 2 221 310 58 29 chr1 241108154 241108325 -41085339 + L2 LINE L2 2201 2376 -938 637 350 51 11 chr1 241108349 241108700 -41084964 + L2 LINE L2 2574 2938 -376 270 296 152 30 chr1 241109051 241109183 -41084481 - L2 LINE L2 0 3272 3125 2127 108 24 0 chr1 241109772 241110068 -41083596 - AluSx SINE Alu -1 311 9 315 297 22 0 chr1 241110723 241110814 -41082850 - L1MC4 LINE L1 -1337 6705 6613 240 274 49 69 chr1 241111574 241111676 -41081988 - MIR SINE MIR -91 171 72 184 77 51 0 chr1 241111906 241111945 -41081719 + T-rich Low_complexity Low_complexity 2 42 0 231 283 44 62 chr1 241113999 241114112 -41079552 + L2 LINE L2 3203 3313 0 2097 124 0 0 chr1 241114614 241114905 -41078759 - AluSx SINE Alu -19 293 3 203 274 14 0 chr1 241115132 241115205 -41078459 + (TA)n Simple_repeat Simple_repeat 1 74 0 302 151 14 0 chr1 241115271 241115344 -41078320 + (TA)n Simple_repeat Simple_repeat 1 74 0 312 321 57 47 chr1 241116196 241116408 -41077256 - L3b LINE CR1 -102 1481 1268 780 311 44 53 chr1 241116415 241116756 -41076908 + L3 LINE CR1 761 1098 -479 1793 169 51 100 chr1 241118004 241118512 -41075152 - L1MB8 LINE L1 -48 6130 5648 180 0 0 0 chr1 241119005 241119025 -41074639 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 1584 174 79 34 chr1 241120411 241120486 -41073178 - MER2 DNA MER2_type -1 343 273 2318 101 3 0 chr1 241120486 241120793 -41072871 + AluSp SINE Alu 6 313 0 1584 174 79 34 chr1 241120793 241121045 -41072619 - MER2 DNA MER2_type -71 273 1 21 57 0 0 chr1 241121499 241121534 -41072130 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 241122015 241122036 -41071628 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr1 241122271 241122299 -41071365 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr1 241123319 241123350 -41070314 + AT_rich Low_complexity Low_complexity 1 31 0 185 196 22 22 chr1 241124081 241124127 -41069537 + MIR SINE MIR 30 75 -133 571 317 128 47 chr1 241124687 241125254 -41068410 + L2 LINE L2 1681 2342 -972 2296 122 22 8 chr1 241125254 241125614 -41068050 - MER47A DNA MER2_type 0 366 2 571 317 128 47 chr1 241125614 241125900 -41067764 + L2 LINE L2 2342 2603 -711 269 266 0 0 chr1 241125945 241126009 -41067655 + LTR33 LTR ERVL 24 87 -434 771 127 30 12 chr1 241126330 241126495 -41067169 + CT-rich Low_complexity Low_complexity 4 171 0 188 285 192 26 chr1 241127240 241127391 -41066273 + MIR SINE MIR 75 250 -12 298 221 47 0 chr1 241127718 241127804 -41065860 + L1MC4 LINE L1 6614 6703 -1339 853 114 0 0 chr1 241127814 241127937 -41065727 - AluY SINE Alu -19 292 170 404 117 36 99 chr1 241128449 241128560 -41065104 - L1MB2 LINE L1 0 6171 6068 1516 172 50 18 chr1 241128584 241128921 -41064743 - L1MB2 LINE L1 -66 6105 5758 21 0 0 0 chr1 241130611 241130632 -41063032 + AT_rich Low_complexity Low_complexity 1 21 0 1873 182 39 0 chr1 241130867 241131202 -41062462 + MER7A DNA MER2_type 1 346 0 1184 200 57 110 chr1 241131580 241131972 -41061692 + Charlie1b DNA MER1_type 34 394 -2367 2077 98 0 0 chr1 241131972 241132246 -41061418 - AluSg SINE Alu -36 274 1 1184 200 57 110 chr1 241132246 241132362 -41061302 + Charlie1b DNA MER1_type 394 515 -8 586 240 87 0 chr1 241132877 241133027 -41060637 + MIR SINE MIR 100 262 0 3037 233 34 28 chr1 241134642 241135571 -41058093 - L1ME1 LINE L1 -5 6161 5234 2494 53 7 3 chr1 241135583 241135884 -41057780 + AluY SINE Alu 1 302 -9 405 245 112 53 chr1 241136228 241136416 -41057248 - MIR SINE MIR -51 211 13 2296 96 3 0 chr1 241136444 241136747 -41056917 + AluSc SINE Alu 1 304 -5 2342 96 0 0 chr1 241137089 241137391 -41056273 - AluSc SINE Alu -7 302 1 27 0 0 0 chr1 241137909 241137936 -41055728 + AT_rich Low_complexity Low_complexity 1 27 0 482 339 62 22 chr1 241138469 241138693 -41054971 + MIR SINE MIR 9 241 -21 1661 177 0 41 chr1 241139545 241139839 -41053825 + AluJo SINE Alu 1 282 -30 245 333 124 8 chr1 241140828 241140957 -41052707 - MIR SINE MIR 0 262 119 256 250 26 0 chr1 241141820 241141896 -41051768 + MER116 DNA Mariner 3 80 0 231 255 38 57 chr1 241142767 241142924 -41050740 - MER103 DNA DNA -5 161 8 1474 170 0 35 chr1 241143115 241143374 -41050290 + AluJo SINE Alu 1 250 -62 246 62 0 0 chr1 241143936 241143968 -41049696 + (T)n Simple_repeat Simple_repeat 1 32 0 2566 40 0 0 chr1 241144235 241144534 -41049130 + AluY SINE Alu 1 299 -12 576 134 0 21 chr1 241144559 241144679 -41048985 - Alu SINE Alu 0 310 207 2117 127 0 0 chr1 241144793 241145101 -41048563 - AluSx SINE Alu 0 308 1 255 160 32 21 chr1 241146304 241146398 -41047266 + (TAGA)n Simple_repeat Simple_repeat 2 96 0 420 330 61 28 chr1 241146443 241146655 -41047009 + L1ME LINE L1 5551 5769 -401 13252 128 36 25 chr1 241146805 241149003 -41044661 + Tigger1 DNA MER2_type 2 2224 -194 3085 30 3 0 chr1 241149004 241149371 -41044293 - L1PA5 LINE L1 -4 6150 5783 28842 29 14 1 chr1 241149385 241155410 -41038254 - L1HS LINE L1 -1 6154 6 996 136 102 6 chr1 241155410 241155587 -41038077 + Tigger1 DNA MER2_type 2223 2416 -2 190 268 0 0 chr1 241156259 241156300 -41037364 - L2 LINE L2 -15 3257 3217 246 231 259 0 chr1 241157060 241157168 -41036496 - MER5C DNA MER1_type -128 196 61 236 316 32 0 chr1 241157907 241158002 -41035662 + MIR3 SINE MIR 104 201 -7 1928 137 50 61 chr1 241158705 241158861 -41034803 - THE1C LTR MaLR 0 375 219 2455 64 3 0 chr1 241158861 241159157 -41034507 - AluY SINE Alu -14 297 1 1928 137 50 61 chr1 241159157 241159379 -41034285 - THE1C LTR MaLR -156 219 1 392 276 33 46 chr1 241159841 241159993 -41033671 - MIR SINE MIR -67 195 46 502 144 0 43 chr1 241160207 241160346 -41033318 + (GAAA)n Simple_repeat Simple_repeat 4 136 0 237 224 20 0 chr1 241160761 241160810 -41032854 + MIR SINE MIR 98 147 -61 419 315 62 50 chr1 241160955 241161295 -41032369 + L2 LINE L2 2511 2854 -460 483 260 7 65 chr1 241161588 241161742 -41031922 + L2 LINE L2 3169 3313 0 234 292 0 0 chr1 241161831 241161896 -41031768 + GA-rich Low_complexity Low_complexity 1 65 0 434 215 146 73 chr1 241163120 241163380 -41030284 - L1ME4a LINE L1 -262 5859 5581 216 0 0 0 chr1 241163404 241163428 -41030236 + (T)n Simple_repeat Simple_repeat 1 24 0 45368 35 1 1 chr1 241163655 241169796 -41023868 - L1PA3 LINE L1 -3 6152 13 300 284 124 66 chr1 241170232 241170489 -41023175 - MER115 DNA AcHobo -266 427 156 220 244 374 8 chr1 241170574 241170705 -41022959 - MER5A DNA MER1_type -2 187 9 192 322 34 51 chr1 241172549 241172726 -41020938 - L2 LINE L2 -422 2892 2719 201 138 35 17 chr1 241173330 241173388 -41020276 + CT-rich Low_complexity Low_complexity 2 60 0 409 254 73 18 chr1 241173731 241173841 -41019823 + MIR SINE MIR 69 184 -78 263 365 26 0 chr1 241175684 241175799 -41017865 - MIR SINE MIR -36 226 109 498 327 45 36 chr1 241175997 241176217 -41017447 - MIR SINE MIR -28 234 13 417 20 0 0 chr1 241176513 241176563 -41017101 + (TA)n Simple_repeat Simple_repeat 2 51 0 2286 88 0 0 chr1 241176563 241176847 -41016817 - AluSx SINE Alu -7 305 22 316 351 76 0 chr1 241177129 241177300 -41016364 - MIR SINE MIR -10 252 69 2678 109 17 3 chr1 241177932 241178291 -41015373 - THE1B LTR MaLR 0 364 1 928 196 5 31 chr1 241179068 241179262 -41014402 - MER53 DNA DNA 0 189 1 188 347 49 42 chr1 241180965 241181109 -41012555 + MIR SINE MIR 7 151 -111 324 216 10 62 chr1 241181744 241181841 -41011823 + MIR SINE MIR 161 252 -10 286 354 16 8 chr1 241182192 241182319 -41011345 - L2 LINE L2 -8 3264 3137 239 309 125 18 chr1 241182730 241182898 -41010766 + L1ME LINE L1 5670 5855 -266 728 217 25 13 chr1 241182968 241183125 -41010539 - MER63A DNA MER1_type 0 210 52 1070 215 29 5 chr1 241183235 241183440 -41010224 + MLT1A1 LTR MaLR 156 365 0 683 286 106 59 chr1 241183448 241183903 -41009761 - L2 LINE L2 -1454 1860 1385 380 309 64 16 chr1 241184115 241184303 -41009361 + MIR SINE MIR 36 232 -30 287 281 53 18 chr1 241184334 241184448 -41009216 + MIR SINE MIR 101 218 -44 288 271 21 0 chr1 241184907 241185003 -41008661 + (TA)n Simple_repeat Simple_repeat 2 99 0 280 185 15 31 chr1 241185043 241185108 -41008556 + L2 LINE L2 3250 3313 0 520 179 0 0 chr1 241185651 241185735 -41007929 + MER5A DNA MER1_type 4 87 -102 3319 73 73 37 chr1 241185740 241186232 -41007432 + LTR61 LTR ERV1 85 594 -1 207 235 309 12 chr1 241186233 241186314 -41007350 + MER5A DNA MER1_type 85 189 0 376 301 180 24 chr1 241186315 241186521 -41007143 + MIR SINE MIR 10 247 -15 293 271 50 118 chr1 241186671 241186832 -41006832 + MIR SINE MIR 26 175 -35 1659 224 21 56 chr1 241187028 241187511 -41006153 - MER31B LTR ERV1 0 466 1 1533 196 3 44 chr1 241187958 241188275 -41005389 - AluJb SINE Alu -8 304 1 2129 128 0 0 chr1 241188408 241188705 -41004959 - AluSx SINE Alu -15 297 1 2081 209 19 21 chr1 241189886 241190317 -41003347 + L1PA16 LINE L1 5717 6146 -20 28 0 0 0 chr1 241190319 241190347 -41003317 + AT_rich Low_complexity Low_complexity 1 28 0 1447 201 9 64 chr1 241190348 241190676 -41002988 + AluJb SINE Alu 1 310 -2 289 341 16 0 chr1 241192349 241192475 -41001189 + MER117 DNA MER1_type 69 196 -1 2167 119 7 0 chr1 241192751 241193044 -41000620 - AluSx SINE Alu -17 295 1 653 193 50 94 chr1 241193475 241193677 -40999987 + MER3 DNA MER1_type 11 203 -6 803 173 60 7 chr1 241193697 241193847 -40999817 - MER105 DNA DNA -20 184 27 1593 178 24 20 chr1 241193969 241194144 -40999520 - AluJo SINE Alu -13 299 121 183 42 0 0 chr1 241194144 241194168 -40999496 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1593 178 24 20 chr1 241194168 241194290 -40999374 - AluJo SINE Alu -191 121 1 1816 151 14 7 chr1 241194608 241194893 -40998771 + AluSx SINE Alu 1 287 -25 647 313 15 5 chr1 241194897 241195092 -40998572 - MIR SINE MIR 0 262 66 3011 182 17 17 chr1 241195422 241196000 -40997664 + L1MC2 LINE L1 5747 6324 -20 276 290 11 0 chr1 241196018 241196111 -40997553 - MER112 DNA MER1_type -85 175 82 351 0 0 0 chr1 241196113 241196152 -40997512 + (TG)n Simple_repeat Simple_repeat 2 40 0 806 172 10 17 chr1 241196759 241197052 -40996612 + CT-rich Low_complexity Low_complexity 1 291 0 390 248 39 47 chr1 241197779 241197908 -40995756 + MER5A DNA MER1_type 59 186 -3 5609 62 5 1 chr1 241199528 241200200 -40993464 - L1PA7 LINE L1 0 6154 5481 2030 110 10 23 chr1 241200200 241200499 -40993165 - AluSx SINE Alu -17 295 1 2192 127 35 0 chr1 241200688 241201028 -40992636 - L1PA16 LINE L1 -11 6155 5804 2076 123 33 0 chr1 241202094 241202396 -40991268 - AluSx SINE Alu 0 312 1 492 158 42 91 chr1 241203797 241203962 -40989702 - L1MC5 LINE L1 -50 7911 7755 1956 252 35 57 chr1 241204091 241204514 -40989150 - L1ME1 LINE L1 -7 6159 5761 1777 116 0 75 chr1 241204514 241204806 -40988858 - AluSx SINE Alu -8 304 35 1956 252 35 57 chr1 241204806 241205191 -40988473 - L1ME1 LINE L1 -405 5761 5369 276 328 71 15 chr1 241205188 241205303 -40988361 - L1MEc LINE L1 -6070 326 194 * 1355 186 35 14 chr1 241205303 241205593 -40988071 + AluJo SINE Alu 1 296 -16 276 328 71 15 chr1 241205593 241205675 -40987989 - L1MEc LINE L1 -6202 194 118 279 0 0 0 chr1 241206607 241206638 -40987026 + (CA)n Simple_repeat Simple_repeat 2 32 0 1176 166 40 14 chr1 241207910 241208133 -40985531 + MER46A DNA MER2_type 8 236 0 267 320 24 8 chr1 241208133 241208258 -40985406 - L1ME LINE L1 -409 5712 5586 2457 77 0 3 chr1 241208435 241208745 -40984919 + AluY SINE Alu 1 309 -2 183 351 97 18 chr1 241210689 241210803 -40982861 + MIR SINE MIR 84 206 -56 1014 226 116 55 chr1 241211436 241211798 -40981866 - MSTD LTR MaLR -12 384 1 417 39 0 0 chr1 241213016 241213067 -40980597 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 25 0 0 0 chr1 241213186 241213211 -40980453 + AT_rich Low_complexity Low_complexity 1 25 0 184 301 123 14 chr1 241213379 241213452 -40980212 + MIR SINE MIR 38 118 -90 284 164 16 16 chr1 241213776 241213837 -40979827 + Charlie8 DNA MER1_type 81 141 -2276 466 268 9 0 chr1 241213939 241214051 -40979613 + MER5B DNA MER1_type 50 162 -16 222 37 0 0 chr1 241214256 241214283 -40979381 + (TAA)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chr1 241214707 241214736 -40978928 + (TG)n Simple_repeat Simple_repeat 1 29 0 2697 90 3 0 chr1 241214874 241215228 -40978436 - THE1A LTR MaLR 0 355 1 1612 171 24 20 chr1 241215621 241215913 -40977751 + AluJo SINE Alu 3 295 -17 1499 140 41 7 chr1 241216858 241217129 -40976535 - L1MA6 LINE L1 0 6300 6021 209 286 57 29 chr1 241217167 241217237 -40976427 + L2 LINE L2 3201 3272 0 264 83 0 0 chr1 241218136 241218172 -40975492 + tRNA-Gly-GGC tRNA tRNA 2 37 -37 344 104 12 0 chr1 241218278 241218345 -40975319 + MER20 DNA MER1_type 123 193 -26 1477 97 178 19 chr1 241218419 241218819 -40974845 + AluSg SINE Alu 1 441 0 405 289 18 0 chr1 241219215 241219329 -40974335 + MIR SINE MIR 78 193 -69 2100 143 3 0 chr1 241219550 241219858 -40973806 + AluSx SINE Alu 3 311 -1 221 29 0 57 chr1 241219977 241220012 -40973652 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 311 296 60 103 chr1 241220381 241220729 -40972935 + L2 LINE L2 2936 3268 -4 35 41 0 0 chr1 241221103 241221152 -40972512 + AT_rich Low_complexity Low_complexity 1 49 0 1794 170 62 3 chr1 241221656 241221980 -40971684 + MER7A DNA MER2_type 2 342 -4 320 190 63 0 chr1 241222173 241222331 -40971333 + (TA)n Simple_repeat Simple_repeat 2 169 0 378 108 68 14 chr1 241222398 241222546 -40971118 + (TA)n Simple_repeat Simple_repeat 2 157 0 219 122 31 61 chr1 241222558 241222656 -40971008 + (TATAA)n Simple_repeat Simple_repeat 5 99 0 374 118 39 56 chr1 241222670 241222848 -40970816 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 278 117 50 0 chr1 241222848 241222908 -40970756 + (TA)n Simple_repeat Simple_repeat 2 64 0 460 304 9 0 chr1 241223665 241223777 -40969887 - L2 LINE L2 -17 3296 3184 390 69 0 0 chr1 241224026 241224084 -40969580 + (GA)n Simple_repeat Simple_repeat 2 59 0 1993 106 26 39 chr1 241224224 241224536 -40969128 - AluSc SINE Alu -1 308 1 25 0 0 0 chr1 241224817 241224842 -40968822 + AT_rich Low_complexity Low_complexity 1 25 0 279 383 135 26 chr1 241226573 241226920 -40966744 + L3b LINE CR1 1102 1486 -97 882 244 135 16 chr1 241227246 241227565 -40966099 + MLT1A1 LTR MaLR 5 361 -4 25 0 0 0 chr1 241228820 241228845 -40964819 + AT_rich Low_complexity Low_complexity 1 25 0 2252 86 0 3 chr1 241229025 241229317 -40964347 - AluSc SINE Alu -18 291 1 31 0 0 0 chr1 241229650 241229681 -40963983 + AT_rich Low_complexity Low_complexity 1 31 0 357 377 52 0 chr1 241230072 241230226 -40963438 + MIR SINE MIR 23 143 -65 536 353 11 11 chr1 241230383 241230644 -40963020 + MIR SINE MIR 1 261 -1 1974 92 75 20 chr1 241231139 241231444 -40962220 + THE1B LTR MaLR 1 322 -42 186 279 44 15 chr1 241232732 241232800 -40960864 - L2 LINE L2 -3 3269 3200 236 276 46 40 chr1 241232956 241233108 -40960556 - L1ME4a LINE L1 -9 6112 5960 1038 186 72 114 chr1 241233225 241233612 -40960052 + MLT1A2 LTR MaLR 4 374 0 253 313 0 10 chr1 241233658 241233757 -40959907 - L1ME4a LINE L1 -407 5714 5617 980 328 60 19 chr1 241234229 241234647 -40959017 - L3 LINE CR1 0 1577 1143 240 154 77 0 chr1 241234870 241234909 -40958755 + 5S rRNA rRNA 1 42 -79 496 309 108 55 chr1 241234925 241235395 -40958269 - L3 LINE CR1 -494 1083 589 1049 127 0 25 chr1 241236619 241236776 -40956888 - AluSg/x SINE Alu -15 297 145 22 0 0 0 chr1 241238746 241238768 -40954896 + AT_rich Low_complexity Low_complexity 1 22 0 1696 183 0 22 chr1 241238929 241239241 -40954423 + AluJo SINE Alu 3 307 -5 1536 185 146 3 chr1 241239366 241239701 -40953963 - MLT1C LTR MaLR 0 467 85 224 208 34 40 chr1 241240031 241240180 -40953484 + (TTATA)n Simple_repeat Simple_repeat 5 152 0 28 61 0 0 chr1 241240214 241240263 -40953401 + AT_rich Low_complexity Low_complexity 1 49 0 365 311 0 0 chr1 241240627 241240876 -40952788 + (CA)n Simple_repeat Simple_repeat 1 249 0 250 381 79 0 chr1 241241013 241241202 -40952462 + MIR SINE MIR 4 207 -55 644 297 135 18 chr1 241242166 241242499 -40951165 + L2 LINE L2 2395 2766 -548 249 336 37 51 chr1 241242509 241242723 -40950941 + L2 LINE L2 3047 3257 -56 258 32 0 0 chr1 241242741 241242772 -40950892 + (T)n Simple_repeat Simple_repeat 1 31 0 375 332 150 30 chr1 241243203 241243576 -40950088 + L2 LINE L2 2874 3291 -22 22 56 0 0 chr1 241243872 241243908 -40949756 + AT_rich Low_complexity Low_complexity 1 36 0 344 254 16 8 chr1 241244198 241244320 -40949344 + (TA)n Simple_repeat Simple_repeat 2 124 0 288 222 40 40 chr1 241244998 241245097 -40948567 + L2 LINE L2 2991 3089 -183 34 79 0 0 chr1 241245549 241245625 -40948039 + AT_rich Low_complexity Low_complexity 1 76 0 1124 183 22 48 chr1 241245777 241246007 -40947657 - AluJo SINE Alu -15 297 74 21 57 0 0 chr1 241246245 241246280 -40947384 + AT_rich Low_complexity Low_complexity 1 35 0 366 345 14 42 chr1 241247249 241247391 -40946273 + MIR3 SINE MIR 2 139 -69 413 271 39 16 chr1 241247789 241247918 -40945746 - MER94 DNA DNA -2 132 1 292 299 67 74 chr1 241248236 241248875 -40944789 - L2 LINE L2 0 3313 2623 586 311 143 22 chr1 241249047 241249417 -40944247 - L2 LINE L2 -1197 2117 1703 384 257 88 0 chr1 241249456 241249569 -40944095 + MER63 DNA MER1_type 1 749 -87 256 389 111 19 chr1 241249667 241250634 -40943030 - L2 LINE L2 -1663 1651 596 21 0 0 0 chr1 241250714 241250735 -40942929 + AT_rich Low_complexity Low_complexity 1 21 0 244 246 18 0 chr1 241250770 241250827 -40942837 + GA-rich Low_complexity Low_complexity 3 60 0 222 37 0 0 chr1 241251543 241251570 -40942094 + (CA)n Simple_repeat Simple_repeat 2 28 0 201 317 67 42 chr1 241257657 241257777 -40935887 - MIR SINE MIR 0 262 140 587 261 146 18 chr1 241258477 241258703 -40934961 + MIR SINE MIR 1 255 -7 180 261 15 15 chr1 241258884 241258949 -40934715 + L2 LINE L2 2471 2535 -779 421 219 0 0 chr1 241258949 241259031 -40934633 - AluJo SINE Alu -225 87 6 757 242 0 7 chr1 241260061 241260214 -40933450 + MER58A DNA MER1_type 1 152 0 210 301 96 0 chr1 241260908 241260981 -40932683 + L2 LINE L2 3193 3272 0 583 328 29 0 chr1 241261061 241261265 -40932399 + MIR SINE MIR 52 261 -1 3116 209 43 34 chr1 241263005 241263833 -40929831 + Charlie1a DNA MER1_type 1 836 -619 2394 189 101 12 chr1 241263933 241264615 -40929049 + Charlie1 DNA MER1_type 2014 2756 -5 188 301 100 108 chr1 241264619 241265008 -40928656 - L2 LINE L2 -51 3221 2836 589 389 41 19 chr1 241265138 241265652 -40928012 - L2 LINE L2 -650 2664 2140 206 188 0 62 chr1 241265870 241265934 -40927730 + GA-rich Low_complexity Low_complexity 6 65 0 25 0 0 0 chr1 241267932 241267957 -40925707 + AT_rich Low_complexity Low_complexity 1 25 0 1363 234 17 73 chr1 241268191 241268713 -40924951 + L1MC5 LINE L1 6662 7154 -807 733 191 103 48 chr1 241268751 241269003 -40924661 + L1MC5 LINE L1 7648 7913 -48 361 288 68 45 chr1 241270183 241270360 -40923304 - MIR SINE MIR -29 233 53 185 0 40 0 chr1 241270462 241270487 -40923177 + (TAA)n Simple_repeat Simple_repeat 2 27 0 198 71 0 0 chr1 241272065 241272093 -40921571 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1770 50 0 0 chr1 241274533 241274753 -40918911 - L1PA8 LINE L1 -8 6164 5945 1370 93 16 0 chr1 241274753 241274946 -40918718 + L1P3 LINE L1 5353 5548 -624 1274 206 146 83 chr1 241275133 241275651 -40918013 - MER39 LTR ERV1 -24 683 1 605 276 137 59 chr1 241276299 241276738 -40916926 - MLT1H LTR MaLR -4 545 73 312 327 85 20 chr1 241277551 241277750 -40915914 - MIR SINE MIR 0 262 51 1903 146 6 58 chr1 241277853 241278182 -40915482 - AluJo SINE Alu 0 312 1 927 258 54 64 chr1 241278218 241278888 -40914776 - L2 LINE L2 -5 3308 2203 472 322 18 63 chr1 241279005 241279340 -40914324 - L2 LINE L2 -337 2977 2658 1178 84 0 12 chr1 241279565 241279731 -40913933 - L1PA7 LINE L1 0 6154 5991 303 125 47 62 chr1 241279817 241279881 -40913783 + L1P LINE L1 5310 5372 -783 22 0 0 0 chr1 241280801 241280823 -40912841 + AT_rich Low_complexity Low_complexity 1 22 0 5385 104 10 11 chr1 241281140 241282245 -40911419 - L1PA12 LINE L1 -92 6076 4979 1923 155 3 10 chr1 241282415 241282724 -40910940 - AluJo SINE Alu -5 307 1 271 299 135 36 chr1 241282730 241282922 -40910742 - L1M4 LINE L1 -1901 4245 4073 193 71 0 48 chr1 241282922 241282964 -40910700 + (TA)n Simple_repeat Simple_repeat 1 40 0 271 299 135 36 chr1 241282964 241283185 -40910479 - L1M4 LINE L1 -2073 4073 3791 405 244 134 17 chr1 241283189 241283308 -40910356 + MIR SINE MIR 130 262 0 5913 145 19 1 chr1 241283514 241284515 -40909149 + L1P LINE L1 4275 5293 -853 703 260 113 17 chr1 241284940 241285171 -40908493 + MIR SINE MIR 2 254 -8 187 282 12 82 chr1 241286118 241286203 -40907461 - L2 LINE L2 -212 3060 2982 208 408 30 9 chr1 241286231 241286464 -40907200 - L2 LINE L2 -407 2907 2670 355 258 0 73 chr1 241286770 241286894 -40906770 - MIR SINE MIR -50 212 98 316 264 198 8 chr1 241287342 241287463 -40906201 + MIR3 SINE MIR 64 207 -1 721 268 80 13 chr1 241287957 241288340 -40905324 + MLT1J LTR MaLR 7 574 -41 24 0 0 0 chr1 241288368 241288392 -40905272 + AT_rich Low_complexity Low_complexity 1 24 0 549 128 0 0 chr1 241288396 241288482 -40905182 + AluY SINE Alu 1 86 -224 265 324 97 51 chr1 241289020 241289196 -40904468 - MIR SINE MIR -76 186 3 259 205 39 13 chr1 241289655 241289671 -40903993 + (CATATA)n Simple_repeat Simple_repeat 2 16 -65 632 179 18 0 chr1 241289671 241289783 -40903881 + MER81 DNA DNA 1 114 0 259 205 39 13 chr1 241289783 241289844 -40903820 + (CATATA)n Simple_repeat Simple_repeat 16 81 0 2365 88 0 0 chr1 241292631 241292925 -40900739 - AluSq SINE Alu -19 294 1 1552 114 89 11 chr1 241293059 241293330 -40900334 + L1PA16 LINE L1 5868 6159 -7 404 286 16 8 chr1 241294434 241294560 -40899104 - MIR SINE MIR -1 261 135 240 304 0 0 chr1 241294780 241294859 -40898805 + MER92B LTR ERV1 484 562 -74 1166 123 6 0 chr1 241294878 241295048 -40898616 + AluSq SINE Alu 133 303 -10 1801 171 0 0 chr1 241295063 241295337 -40898327 + AluSx SINE Alu 3 276 -36 2149 115 3 13 chr1 241295715 241296027 -40897637 + AluSx SINE Alu 1 309 -3 2147 112 0 14 chr1 241296148 241296443 -40897221 + AluSx SINE Alu 5 295 -17 5854 143 26 3 chr1 241296735 241297739 -40895925 - L1P LINE L1 -778 5368 4342 3949 148 21 0 chr1 241297739 241298356 -40895308 - HERVL LTR ERVL -1739 3915 3286 1892 107 0 0 chr1 241298363 241298607 -40895057 + AluSc SINE Alu 3 246 -63 505 322 64 28 chr1 241299859 241300414 -40893250 - L1MEc LINE L1 -3518 2908 2324 2335 245 60 27 chr1 241300507 241301210 -40892454 + HsTC2c DNA MER2_type 4 729 0 648 287 63 44 chr1 241301334 241301379 -40892285 + L1ME LINE L1 849 892 -5504 2196 106 0 0 chr1 241301379 241301663 -40892001 + AluSg SINE Alu 1 284 -26 648 287 63 44 chr1 241301663 241301680 -40891984 + L1ME LINE L1 892 907 -5489 294 29 0 0 chr1 241301680 241301715 -40891949 + (TTA)n Simple_repeat Simple_repeat 3 37 0 648 287 63 44 chr1 241301715 241302183 -40891481 + L1ME LINE L1 907 1432 -4964 237 250 22 11 chr1 241302190 241302282 -40891382 - L1MEc LINE L1 -4346 2080 1988 601 289 48 3 chr1 241302352 241302708 -40890956 + L1ME LINE L1 2113 2484 -3912 251 184 0 0 chr1 241302747 241302785 -40890879 + AluY SINE Alu 5 42 -260 4150 189 6 1 chr1 241302886 241303776 -40889888 - L1PBa LINE L1 -3180 3682 2787 354 151 0 0 chr1 241303777 241303830 -40889834 - Alu SINE Alu -14 287 235 2019 240 185 12 chr1 241303830 241304588 -40889076 - L1PBa LINE L1 -5839 1024 136 213 121 0 0 chr1 241304958 241304991 -40888673 + (T)n Simple_repeat Simple_repeat 1 33 0 2141 121 0 7 chr1 241305309 241305606 -40888058 - AluSg SINE Alu -15 295 1 814 302 83 4 chr1 241305702 241305944 -40887720 - MIR SINE MIR 0 262 2 185 359 33 43 chr1 241305979 241306071 -40887593 + MIR SINE MIR 50 140 -122 306 300 22 0 chr1 241306437 241306527 -40887137 - L1MC4 LINE L1 -1337 6705 6614 205 237 0 0 chr1 241306527 241306565 -40887099 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr1 241306926 241306949 -40886715 + AT_rich Low_complexity Low_complexity 1 23 0 2375 64 0 0 chr1 241307101 241307384 -40886280 + AluY SINE Alu 17 299 -12 3809 94 9 13 chr1 241308724 241309265 -40884399 + L1PA10 LINE L1 5614 6152 -16 334 277 213 0 chr1 241311905 241312046 -40881618 - MIR SINE MIR -6 256 86 21 0 0 0 chr1 241312285 241312306 -40881358 + AT_rich Low_complexity Low_complexity 1 21 0 2395 92 0 3 chr1 241312375 241312681 -40880983 - AluSc SINE Alu -4 305 1 25 0 0 0 chr1 241312778 241312803 -40880861 + AT_rich Low_complexity Low_complexity 1 25 0 440 270 17 9 chr1 241312864 241312979 -40880685 - L2 LINE L2 -4 3309 3194 1908 139 10 17 chr1 241313376 241313670 -40879994 + AluSx SINE Alu 1 292 -20 2082 120 3 7 chr1 241315012 241315303 -40878361 + AluSx SINE Alu 1 290 -22 2222 143 20 13 chr1 241316126 241316519 -40877145 + MER57A LTR ERV1 8 403 0 2220 114 0 32 chr1 241316575 241316891 -40876773 + AluSq SINE Alu 3 308 -5 378 291 99 7 chr1 241317353 241317494 -40876170 + MIR SINE MIR 96 249 -13 321 281 16 87 chr1 241317762 241317947 -40875717 - MLT1J2 LTR MaLR -229 221 50 196 362 17 43 chr1 241318834 241318916 -40874748 + L2 LINE L2 3160 3240 -32 2138 127 124 16 chr1 241318916 241319302 -40874362 - MSTA LTR MaLR 0 428 1 196 362 17 43 chr1 241319302 241319335 -40874329 + L2 LINE L2 3240 3272 0 362 349 47 0 chr1 241319623 241319752 -40873912 - L2 LINE L2 -1 3312 3178 328 297 133 8 chr1 241320046 241320174 -40873490 + MER20B DNA MER1_type 10 153 -630 2319 55 0 7 chr1 241322989 241323278 -40870386 + AluY SINE Alu 16 302 -9 233 310 44 35 chr1 241323894 241324007 -40869657 + L2 LINE L2 3155 3268 -4 285 51 0 0 chr1 241324785 241324824 -40868840 + (T)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr1 241324987 241325009 -40868655 + AT_rich Low_complexity Low_complexity 1 22 0 2496 62 0 28 chr1 241325530 241325850 -40867814 - AluY SINE Alu 0 311 1 2815 284 52 33 chr1 241326216 241327799 -40865865 - L1MEc LINE L1 -4748 1648 35 207 292 0 42 chr1 241328036 241328108 -40865556 + L2 LINE L2 3245 3313 0 279 341 106 26 chr1 241328213 241328524 -40865140 + L3 LINE CR1 617 952 -625 239 246 140 43 chr1 241328999 241329123 -40864541 - MIR SINE MIR -59 203 69 1718 146 45 7 chr1 241329438 241329725 -40863939 + AluJo SINE Alu 1 298 -14 216 273 65 13 chr1 241330658 241330735 -40862929 - MIR3 SINE MIR 0 208 128 2346 94 13 3 chr1 241331429 241331738 -40861926 - AluSq SINE Alu -1 312 1 963 100 0 0 chr1 241332016 241332156 -40861508 + L1PA13 LINE L1 6011 6150 -13 230 184 0 11 chr1 241332245 241332332 -40861332 + (TA)n Simple_repeat Simple_repeat 1 86 0 2157 124 0 0 chr1 241332333 241332624 -40861040 - AluSx SINE Alu -21 291 1 218 299 156 0 chr1 241333273 241333350 -40860314 - MIR SINE MIR -14 248 160 409 252 19 10 chr1 241333514 241333617 -40860047 - MER5A DNA MER1_type -85 104 1 457 271 8 0 chr1 241333699 241333832 -40859832 + MER103 DNA DNA 22 155 -11 2170 125 0 0 chr1 241334396 241334693 -40858971 - AluSx SINE Alu -15 297 1 1993 126 0 0 chr1 241335247 241335524 -40858140 + AluSx SINE Alu 20 296 -16 2030 131 0 3 chr1 241336447 241336730 -40856934 + AluSx SINE Alu 14 295 -17 221 236 56 22 chr1 241336942 241337031 -40856633 + L2 LINE L2 2596 2687 -627 243 339 40 36 chr1 241337075 241337243 -40856421 + L1MC/D LINE L1 5621 5792 -2016 841 214 112 24 chr1 241337243 241337449 -40856215 - MER58A DNA MER1_type 0 224 1 243 339 40 36 chr1 241337449 241337554 -40856110 + L1MC/D LINE L1 5792 5895 -1913 221 174 22 0 chr1 241337590 241337636 -40856028 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 2203 113 3 3 chr1 241337780 241338080 -40855584 - AluSx SINE Alu -12 300 1 290 317 62 7 chr1 241338496 241338641 -40855023 + L2 LINE L2 3142 3294 -19 510 286 107 59 chr1 241338960 241339503 -40854161 - MLT1L LTR MaLR -22 593 25 277 282 48 40 chr1 241339606 241339730 -40853934 + MIR SINE MIR 64 188 -74 279 288 12 0 chr1 241341706 241341786 -40851878 + MIR3 SINE MIR 117 197 -11 315 164 45 0 chr1 241342636 241342703 -40850961 + MIR SINE MIR 80 149 -113 1928 76 33 18 chr1 241342769 241343044 -40850620 - L1PA7 LINE L1 0 6154 5876 410 312 116 5 chr1 241343402 241343601 -40850063 - MIR SINE MIR -32 230 10 459 102 20 10 chr1 241343650 241343748 -40849916 + (TA)n Simple_repeat Simple_repeat 2 100 0 1168 207 4 21 chr1 241343750 241343987 -40849677 - MER8 DNA MER2_type 0 239 7 527 34 0 114 chr1 241344081 241344118 -40849546 + MADE1 DNA Mariner 3 26 -54 2158 106 3 3 chr1 241344118 241344419 -40849245 - AluSp SINE Alu -12 301 1 527 34 0 114 chr1 241344419 241344469 -40849195 + MADE1 DNA Mariner 26 80 0 240 363 20 0 chr1 241344522 241344624 -40849040 - L2 LINE L2 0 3313 3210 984 232 51 29 chr1 241344686 241345001 -40848663 - MER58B DNA MER1_type -1 340 19 833 159 0 0 chr1 241346728 241346860 -40846804 + FLAM_A SINE Alu 8 139 -3 358 259 96 4 chr1 241347007 241347131 -40846533 - MIR SINE MIR -62 146 19 3285 146 15 10 chr1 241347184 241347300 -40846364 - MER1A DNA MER1_type -2173 527 413 2235 79 0 7 chr1 241347300 241347579 -40846085 - AluY SINE Alu -2 309 33 3285 146 15 10 chr1 241347579 241347984 -40845680 - MER1A DNA MER1_type -2287 413 3 24 0 0 0 chr1 241348014 241348038 -40845626 + AT_rich Low_complexity Low_complexity 1 24 0 736 208 0 79 chr1 241348430 241348560 -40845104 - MER5A DNA MER1_type 0 189 75 937 199 0 0 chr1 241348560 241348716 -40844948 - FRAM SINE Alu -10 156 1 736 208 0 79 chr1 241348716 241348763 -40844901 - MER5A DNA MER1_type -114 75 26 1666 259 42 16 chr1 241349376 241349875 -40843789 - LTR31 LTR ERV1 0 619 108 1614 171 14 17 chr1 241349925 241350218 -40843446 - AluJo SINE Alu -20 292 1 2666 32 0 0 chr1 241350423 241350731 -40842933 + AluY SINE Alu 1 308 -3 2298 80 3 7 chr1 241351326 241351628 -40842036 - AluSq SINE Alu -12 301 1 259 300 25 12 chr1 241351635 241351715 -40841949 - MIR SINE MIR -63 145 65 477 201 11 123 chr1 241351820 241351999 -40841665 - MIR SINE MIR -16 246 88 564 240 120 29 chr1 241352925 241353133 -40840531 - MIR SINE MIR -24 238 12 1437 231 122 22 chr1 241353507 241353966 -40839698 + MLT1D LTR MaLR 1 505 0 861 179 10 51 chr1 241354663 241354858 -40838806 - MER5A DNA MER1_type -2 187 1 309 270 90 60 chr1 241355783 241355983 -40837681 - L3b LINE CR1 -92 1491 1286 1944 106 0 90 chr1 241356623 241356944 -40836720 - AluSx SINE Alu -20 292 1 487 223 122 40 chr1 241357218 241357366 -40836298 + MER69A DNA AcHobo 18 177 0 1593 136 21 46 chr1 241357538 241357818 -40835846 + AluJb SINE Alu 38 310 -2 1319 130 5 37 chr1 241357821 241358036 -40835628 + AluJo SINE Alu 92 299 -13 842 244 82 29 chr1 241358404 241358683 -40834981 - LTR19C LTR ERV1 0 779 486 * 1432 202 26 84 chr1 241358661 241359076 -40834588 - LTR9 LTR ERV1 -221 391 1 1828 84 42 138 chr1 241359454 241359788 -40833876 + AluSp SINE Alu 1 302 -11 366 307 52 31 chr1 241359833 241360025 -40833639 + MIR SINE MIR 59 254 -8 4030 142 87 1 chr1 241360814 241361469 -40832195 - MER72 LTR ERV1 0 722 12 21 0 0 0 chr1 241361709 241361730 -40831934 + AT_rich Low_complexity Low_complexity 1 21 0 717 288 33 9 chr1 241362414 241362629 -40831035 + MIR SINE MIR 32 251 -11 199 257 59 59 chr1 241362673 241362774 -40830890 - L2 LINE L2 -3 3269 3169 640 298 23 19 chr1 241362827 241363042 -40830622 + MIR SINE MIR 7 222 -40 2141 138 0 0 chr1 241363841 241364152 -40829512 - AluSx SINE Alu -1 311 1 326 271 42 25 chr1 241364240 241364358 -40829306 - MIR SINE MIR -108 154 35 3208 127 27 35 chr1 241364883 241365404 -40828260 + L1PA15 LINE L1 5648 6164 -1 1163 174 42 9 chr1 241366073 241366285 -40827379 - MER20 DNA MER1_type 0 219 1 288 231 209 22 chr1 241366379 241366513 -40827151 - MIR SINE MIR -12 250 92 2546 157 14 48 chr1 241367713 241368196 -40825468 + MLT1C LTR MaLR 1 467 0 636 301 73 89 chr1 241368432 241368914 -40824750 - MLT1J LTR MaLR -8 503 30 279 267 56 44 chr1 241369102 241369192 -40824472 - MLT1J2 LTR MaLR -62 388 298 422 250 90 27 chr1 241369203 241369408 -40824256 - MLT1J LTR MaLR -217 229 1 2724 95 3 0 chr1 241369540 241369898 -40823766 + L1PA13 LINE L1 5804 6162 -1 2012 91 67 20 chr1 241369942 241370240 -40823424 - AluSx SINE Alu 0 312 1 661 133 26 0 chr1 241370246 241370359 -40823305 + L1MA5 LINE L1 6180 6295 -5 958 301 45 38 chr1 241370746 241370803 -40822861 - ERVL LTR ERVL -3279 2485 2430 2208 110 0 0 chr1 241370803 241371095 -40822569 - AluSg SINE Alu -18 292 1 958 301 45 38 chr1 241371095 241371482 -40822182 - ERVL LTR ERVL -3334 2430 2038 340 269 106 0 chr1 241372261 241372365 -40821299 - MLT1D LTR MaLR -72 433 319 578 206 78 159 chr1 241372458 241372519 -40821145 + HsTC2 DNA Tc2 1287 1351 -547 2037 59 0 59 chr1 241372519 241372808 -40820856 - AluY SINE Alu 0 311 40 578 206 78 159 chr1 241372808 241373223 -40820441 + HsTC2 DNA Tc2 1351 1900 2 1829 162 0 0 chr1 241373383 241373661 -40820003 - AluSx SINE Alu -14 298 21 2521 72 0 0 chr1 241374297 241374603 -40819061 - AluY SINE Alu -5 306 1 189 306 0 0 chr1 241374671 241374720 -40818944 - L2 LINE L2 -1 3312 3264 261 250 94 9 chr1 241374998 241375134 -40818530 + L1M1 LINE L1 1702 1830 -4554 330 284 34 75 chr1 241375150 241375389 -40818275 + L1MEc LINE L1 1858 2086 -4310 579 231 29 6 chr1 241375456 241375629 -40818035 + L1MEc LINE L1 2386 2562 -3653 2624 226 70 68 chr1 241375854 241376629 -40817035 + L1MEc LINE L1 2122 2859 -3356 2226 87 3 27 chr1 241376629 241376928 -40816736 + AluSg SINE Alu 1 292 -18 2624 226 70 68 chr1 241376928 241377374 -40816290 + L1MEc LINE L1 2859 3303 -2912 302 175 39 122 chr1 241377782 241377932 -40815732 + LTR50 LTR ERVL 638 795 0 29 28 0 0 chr1 241378028 241378064 -40815600 + AT_rich Low_complexity Low_complexity 1 36 0 398 140 9 93 chr1 241378395 241378502 -40815162 + L1ME1 LINE L1 5771 5868 -298 354 179 39 13 chr1 241378503 241378581 -40815083 + L1ME2 LINE L1 5340 5419 -743 2661 124 56 36 chr1 241378582 241378842 -40814822 + LTR47A LTR ERVL 1 275 -177 2766 118 3 0 chr1 241378842 241379205 -40814459 + THE1B LTR MaLR 1 364 0 2661 124 56 36 chr1 241379205 241379387 -40814277 + LTR47A LTR ERVL 275 452 0 1317 262 66 21 chr1 241379394 241379863 -40813801 + L1ME2 LINE L1 5428 5917 -247 860 226 49 35 chr1 241379858 241380084 -40813580 - L1M4 LINE L1 -1246 4900 4672 * 1700 179 14 7 chr1 241380159 241380456 -40813208 - AluJo SINE Alu -13 299 1 707 222 15 0 chr1 241380465 241380600 -40813064 - FLAM_A SINE Alu -5 137 1 25 0 0 0 chr1 241380613 241380638 -40813026 + AT_rich Low_complexity Low_complexity 1 25 0 2649 117 0 29 chr1 241380709 241381095 -40812569 - THE1C LTR MaLR 0 375 1 9163 130 29 45 chr1 241381095 241382831 -40810833 - THE1C-int LTR MaLR 0 1651 1 269 67 0 44 chr1 241384050 241384095 -40809569 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 192 158 0 0 chr1 241384087 241384125 -40809539 + CT-rich Low_complexity Low_complexity 1 38 0 * 2047 143 0 0 chr1 241384125 241384534 -40809130 - AluSx SINE Alu 0 409 1 634 279 68 63 chr1 241385599 241385997 -40807667 - L2 LINE L2 -8 3305 2906 185 0 40 0 chr1 241386595 241386620 -40807044 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1562 160 40 62 chr1 241386714 241387039 -40806625 + LTR26 LTR ERV1 3 320 -283 1771 165 9 37 chr1 241387065 241387223 -40806441 + LTR26 LTR ERV1 291 437 -166 2288 91 7 0 chr1 241387223 241387521 -40806143 + AluSg SINE Alu 1 300 -10 1771 165 9 37 chr1 241387521 241387684 -40805980 + LTR26 LTR ERV1 437 603 0 345 314 20 33 chr1 241387708 241387861 -40805803 + HUERS-P1 LTR ERV1 25 175 -6088 671 247 155 33 chr1 241387984 241388255 -40805409 + HUERS-P1 LTR ERV1 411 714 -5549 * 838 231 25 37 chr1 241388224 241388512 -40805152 + HUERS-P1 LTR ERV1 662 902 -5044 1628 158 0 0 chr1 241388624 241388884 -40804780 + MER6 DNA MER2_type 606 865 0 2211 174 58 95 chr1 241388890 241389437 -40804227 - LTR26 LTR ERV1 0 603 77 231 150 50 0 chr1 241389814 241389854 -40803810 - MER49 LTR ERV1 -686 237 196 4573 149 54 44 chr1 241389854 241391198 -40802466 - pTR5 LTR ERV1 -133 1681 35 988 174 21 16 chr1 241391198 241391388 -40802276 - MER49 LTR ERV1 -724 199 9 976 164 4 6 chr1 241391389 241391617 -40802047 - LOR1-int LTR ERV1 -1023 7097 6829 262 180 66 0 chr1 241391625 241391686 -40801978 - LOR1-int LTR ERV1 -320 6438 6374 1107 152 23 62 chr1 241391702 241392087 -40801577 - LOR1-int LTR ERV1 -595 6163 3786 6128 172 73 74 chr1 241392267 241393174 -40800490 - LOR1-int LTR ERV1 -2148 4183 3277 1683 180 0 7 chr1 241393174 241393457 -40800207 - AluJb SINE Alu -29 283 3 6128 172 73 74 chr1 241393457 241394827 -40798837 - LOR1-int LTR ERV1 -3054 3277 723 * 6132 179 52 24 chr1 241393956 241395238 -40798426 - LTR57-int LTR ERVL -3751 1592 275 343 245 22 24 chr1 241395485 241395635 -40798029 - MLT1E2 LTR MaLR -18 606 364 21 0 0 0 chr1 241396039 241396060 -40797604 + AT_rich Low_complexity Low_complexity 1 21 0 598 311 30 14 chr1 241396185 241396532 -40797132 - L1MC4a LINE L1 -359 5811 5545 222 373 34 8 chr1 241396864 241396982 -40796682 - MIR SINE MIR -111 151 31 301 247 105 97 chr1 241398075 241398322 -40795342 - MLT1K LTR MaLR -6 582 334 211 257 27 14 chr1 241399665 241399739 -40793925 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 275 326 82 69 chr1 241400038 241400208 -40793456 + MIR SINE MIR 2 177 -85 2142 98 25 0 chr1 241400208 241400484 -40793180 + AluSc SINE Alu 3 285 -24 275 326 82 69 chr1 241400484 241400558 -40793106 + MIR SINE MIR 177 249 -13 231 293 27 0 chr1 241400654 241400729 -40792935 - MIR SINE MIR 0 262 186 422 278 73 0 chr1 241400808 241400939 -40792725 - MIR SINE MIR -63 145 10 383 191 0 15 chr1 241402819 241402887 -40790777 - MER6A DNA MER2_type -537 68 2 429 55 0 0 chr1 241403184 241403239 -40790425 - MLT2A1 LTR ERVL 0 453 399 207 0 0 0 chr1 241403239 241403262 -40790402 + (TA)n Simple_repeat Simple_repeat 2 24 0 290 127 0 16 chr1 241403309 241403372 -40790292 + (TA)n Simple_repeat Simple_repeat 2 63 0 1466 107 19 5 chr1 241403377 241403592 -40790072 - MLT2A1 LTR ERVL -41 403 186 956 63 39 0 chr1 241403595 241403722 -40789942 - MLT2A2 LTR ERVL -319 134 3 430 183 43 9 chr1 241404456 241404571 -40789093 - Charlie2a DNA MER1_type -16 2846 2728 801 206 11 6 chr1 241404596 241404776 -40788888 - Charlie2a DNA MER1_type -1206 1656 1476 294 164 0 0 chr1 241404815 241404870 -40788794 + (TGGA)n Simple_repeat Simple_repeat 4 58 0 943 103 23 6 chr1 241404884 241405058 -40788606 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 540 229 0 0 chr1 241405065 241405174 -40788490 - Charlie2b DNA MER1_type -2118 664 556 459 244 260 20 chr1 241405168 241405422 -40788242 - Charlie2b DNA MER1_type -2547 315 1 * 478 282 27 58 chr1 241405459 241405647 -40788017 + L3 LINE CR1 1394 1575 -2 1875 138 20 13 chr1 241405939 241406243 -40787421 + AluSx SINE Alu 1 306 -6 207 0 0 0 chr1 241409326 241409349 -40784315 + (TC)n Simple_repeat Simple_repeat 1 23 0 324 276 61 20 chr1 241411064 241411162 -40782502 - L2 LINE L2 -16 3256 3155 218 254 57 107 chr1 241412520 241412642 -40781022 - MIR SINE MIR -75 133 18 357 145 0 0 chr1 241413296 241413358 -40780306 + (GA)n Simple_repeat Simple_repeat 1 62 0 22 56 0 0 chr1 241413906 241413942 -40779722 + AT_rich Low_complexity Low_complexity 1 36 0 228 67 0 0 chr1 241415148 241415178 -40778486 + (TA)n Simple_repeat Simple_repeat 2 31 0 371 253 62 19 chr1 241416139 241416301 -40777363 + L1MA10 LINE L1 6166 6334 0 23 86 0 0 chr1 241416799 241416857 -40776807 + AT_rich Low_complexity Low_complexity 1 58 0 1403 235 15 14 chr1 241416930 241417477 -40776187 + L1M4 LINE L1 4937 5481 -703 229 274 33 39 chr1 241417504 241417657 -40776007 + (CTGGGG)n Simple_repeat Simple_repeat 5 156 0 24 0 0 0 chr1 241420063 241420087 -40773577 + GC_rich Low_complexity Low_complexity 1 24 0 197 219 0 16 chr1 241420808 241420872 -40772792 + (TA)n Simple_repeat Simple_repeat 1 63 0 232 125 0 71 chr1 241420990 241421046 -40772618 + (CAGAGA)n Simple_repeat Simple_repeat 3 54 0 21 71 0 0 chr1 241421125 241421167 -40772497 + AT_rich Low_complexity Low_complexity 1 42 0 437 343 60 19 chr1 241421438 241421869 -40771795 + L1MC4a LINE L1 5433 5881 -1927 1522 211 7 0 chr1 241424020 241424489 -40769175 + AluJb SINE Alu 1 471 0 913 265 18 48 chr1 241424532 241424989 -40768675 - L1MEc LINE L1 -5118 1278 836 315 202 26 18 chr1 241424989 241425103 -40768561 + CT-rich Low_complexity Low_complexity 1 115 0 2400 254 49 31 chr1 241425103 241425882 -40767782 - L1MEc LINE L1 -5556 840 48 450 347 98 11 chr1 241426012 241426297 -40767367 - ERVL LTR ERVL -694 5070 4761 189 341 0 0 chr1 241426863 241426907 -40766757 + MIR SINE MIR 33 76 -186 326 275 208 7 chr1 241426913 241427062 -40766602 + MIR SINE MIR 33 211 -51 186 143 24 71 chr1 241427171 241427213 -40766451 + L2 LINE L2 3208 3247 -25 232 274 0 16 chr1 241427266 241427328 -40766336 + L2 LINE L2 3238 3298 -15 285 29 0 0 chr1 241428798 241428832 -40764832 + (GA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr1 241429655 241429691 -40763973 + AT_rich Low_complexity Low_complexity 1 36 0 271 245 31 51 chr1 241429751 241429849 -40763815 - MIR SINE MIR -114 148 53 294 210 16 0 chr1 241430879 241430941 -40762723 + L2 LINE L2 3241 3303 -10 346 254 55 36 chr1 241431416 241431526 -40762138 + L2 LINE L2 3202 3313 0 228 67 0 0 chr1 241431577 241431607 -40762057 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 2141 120 0 0 chr1 241432077 241432360 -40761304 + AluSx SINE Alu 1 283 -29 1472 211 101 0 chr1 241432770 241433125 -40760539 + L1MB4 LINE L1 5784 6174 -6 941 180 44 40 chr1 241433697 241433925 -40759739 + L1MB7 LINE L1 5626 5854 -330 2169 158 72 60 chr1 241433926 241434305 -40759359 + L1MA9 LINE L1 5783 6171 -141 282 56 0 0 chr1 241434305 241434341 -40759323 + (CA)n Simple_repeat Simple_repeat 2 37 0 2169 158 72 60 chr1 241434341 241434460 -40759204 + L1MA9 LINE L1 6171 6287 -25 301 340 37 73 chr1 241435285 241435449 -40758215 + MIR3 SINE MIR 18 175 -33 1835 135 8 0 chr1 241436549 241436816 -40756848 + AluSx SINE Alu 41 309 -3 1028 99 6 22 chr1 241436820 241436867 -40756797 + (GAAA)n Simple_repeat Simple_repeat 1 224 0 1028 99 6 22 chr1 241436867 241437048 -40756616 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 1432 153 9 0 chr1 241439659 241439887 -40753777 + AluJb SINE Alu 1 230 -82 1108 110 0 11 chr1 241439887 241439959 -40753705 + (GAAA)n Simple_repeat Simple_repeat 1 251 0 1108 110 0 11 chr1 241439959 241440141 -40753523 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 873 143 0 28 chr1 241440430 241440612 -40753052 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 201 250 0 0 chr1 241441092 241441140 -40752524 + T-rich Low_complexity Low_complexity 1 48 0 260 298 70 18 chr1 241442345 241442459 -40751205 + L2 LINE L2 3133 3252 -20 1010 268 96 21 chr1 241442497 241442739 -40750925 + MLT1J2 LTR MaLR 1 282 -168 2523 182 15 4 chr1 241442739 241443195 -40750469 - MER65C LTR ERV1 0 461 1 1010 268 96 21 chr1 241443195 241443329 -40750335 + MLT1J2 LTR MaLR 282 405 -45 22 35 0 0 chr1 241443608 241443637 -40750027 + AT_rich Low_complexity Low_complexity 1 29 0 2430 108 51 20 chr1 241443642 241443994 -40749670 + THE1B LTR MaLR 1 363 -1 12724 89 4 2 chr1 241443997 241445571 -40748093 + THE1B-int LTR MaLR 4 1580 0 2467 113 48 20 chr1 241445572 241445925 -40747739 + THE1B LTR MaLR 2 364 0 381 352 44 29 chr1 241447749 241448206 -40745458 - HERV15 LTR ERV1 -2017 5739 5390 512 378 22 33 chr1 241448303 241448793 -40744871 - HERV15 LTR ERV1 -3432 3690 3206 304 265 48 87 chr1 241449065 241449368 -40744296 - HERV15 LTR ERV1 -3268 3823 3587 649 157 0 131 chr1 241449421 241449753 -40743911 + FLAM_C SINE Alu 1 312 0 2278 104 13 0 chr1 241450283 241450582 -40743082 - AluSx SINE Alu -9 303 1 270 262 40 32 chr1 241451025 241451151 -40742513 - HERV15 LTR ERV1 -6542 2193 2067 1516 224 28 22 chr1 241451301 241451854 -40741810 - L1M3 LINE L1 -679 5501 4946 27 0 0 0 chr1 241452254 241452281 -40741383 + AT_rich Low_complexity Low_complexity 1 27 0 513 211 20 59 chr1 241452643 241452795 -40740869 - L1MA10 LINE L1 -9 6325 6180 671 338 54 47 chr1 241453692 241454397 -40739267 + ERVL LTR ERVL 1790 2499 -3265 702 191 194 78 chr1 241454499 241454793 -40738871 + L1MCc LINE L1 1038 1365 -5058 332 299 106 25 chr1 241455091 241455449 -40738215 + MLT1J2 LTR MaLR 1 450 0 24 0 0 0 chr1 241455486 241455510 -40738154 + AT_rich Low_complexity Low_complexity 1 24 0 421 286 25 92 chr1 241455533 241455771 -40737893 + MLT1J LTR MaLR 1 222 -289 1053 105 7 13 chr1 241455774 241455926 -40737738 + AluSc SINE Alu 1 151 -158 1526 94 0 10 chr1 241455928 241456131 -40737533 + AluSg/x SINE Alu 102 302 -8 581 317 107 27 chr1 241456150 241456412 -40737252 + MLT1J LTR MaLR 223 505 -6 2615 163 8 40 chr1 241456690 241457168 -40736496 - MLT1C LTR MaLR -4 463 1 195 320 52 52 chr1 241457543 241457737 -40735927 - L2 LINE L2 -157 3115 2922 2215 94 13 3 chr1 241458148 241458447 -40735217 + AluSq SINE Alu 1 302 -11 788 221 65 62 chr1 241458899 241459220 -40734444 + L1M4 LINE L1 4572 4893 -1253 1690 265 84 9 chr1 241459221 241459780 -40733884 - L1ME2 LINE L1 -246 5987 5387 323 289 10 0 chr1 241459793 241459897 -40733767 - L1ME2 LINE L1 -1082 5133 5029 1847 134 23 36 chr1 241459959 241460266 -40733398 - AluJb SINE Alu -9 303 1 412 262 131 2 chr1 241460269 241460358 -40733306 - L1ME2 LINE L1 -79 6087 6011 1272 218 130 36 chr1 241460358 241460720 -40732944 - MLT2C1 LTR ERVL 0 397 2 412 262 131 2 chr1 241460720 241460817 -40732847 - L1ME2 LINE L1 -155 6011 5875 27 29 0 0 chr1 241461142 241461176 -40732488 + AT_rich Low_complexity Low_complexity 1 34 0 278 201 21 118 chr1 241461281 241461425 -40732239 - LTR41 LTR ERVL -6 767 638 240 246 0 58 chr1 241461433 241461502 -40732162 + LTR67 LTR ERVL 155 219 -338 1151 254 74 7 chr1 241461835 241462292 -40731372 - L1ME2 LINE L1 -2919 3296 2809 22 0 0 0 chr1 241463528 241463550 -40730114 + AT_rich Low_complexity Low_complexity 1 22 0 225 241 56 0 chr1 241463880 241463934 -40729730 - L1ME2 LINE L1 -4668 1728 1672 219 309 0 0 chr1 241464248 241464303 -40729361 + L2 LINE L2 3257 3311 -2 2233 101 16 0 chr1 241464870 241465178 -40728486 - AluSp SINE Alu 0 313 1 2290 117 0 0 chr1 241465400 241465708 -40727956 + AluSx SINE Alu 1 308 -4 1067 231 100 104 chr1 241465792 241466529 -40727135 - HsTC2a DNA Tc2 0 744 11 321 109 0 0 chr1 241466625 241466680 -40726984 + (GA)n Simple_repeat Simple_repeat 2 56 0 215 241 25 51 chr1 241466890 241466969 -40726695 - L2 LINE L2 -8 3264 3188 282 318 0 0 chr1 241467017 241467102 -40726562 + MIR3 SINE MIR 92 176 -32 1580 58 0 5 chr1 241467203 241467393 -40726271 - AluY SINE Alu -23 288 100 1720 163 3 45 chr1 241468871 241469184 -40724480 + AluJo SINE Alu 1 300 -12 36 0 0 0 chr1 241469374 241469410 -40724254 + AT_rich Low_complexity Low_complexity 1 36 0 1145 142 0 0 chr1 241469753 241469922 -40723742 - AluSg/x SINE Alu -14 296 128 2426 61 14 0 chr1 241470155 241470452 -40723212 + AluSp SINE Alu 1 301 -12 257 288 144 9 chr1 241470624 241470735 -40722929 + L2 LINE L2 3133 3258 -14 1645 211 0 10 chr1 241470747 241471046 -40722618 + AluJb SINE Alu 1 296 -16 951 229 92 13 chr1 241471081 241471386 -40722278 + MLT1J2 LTR MaLR 2 330 -120 2399 98 3 0 chr1 241471701 241472007 -40721657 + AluSq SINE Alu 1 307 -6 22 56 0 0 chr1 241472111 241472147 -40721517 + AT_rich Low_complexity Low_complexity 1 36 0 681 275 74 61 chr1 241472856 241473329 -40720335 + MLT1J LTR MaLR 32 510 -1 241 354 31 15 chr1 241473445 241473575 -40720089 + MLT1K LTR MaLR 15 146 -442 213 121 0 0 chr1 241473818 241473851 -40719813 + (CA)n Simple_repeat Simple_repeat 1 33 0 345 319 9 43 chr1 241474750 241474939 -40718725 + MIR SINE MIR 17 199 -62 1010 190 93 139 chr1 241475216 241475809 -40717855 + MLT1F1 LTR MaLR 1 567 0 309 288 95 91 chr1 241475827 241476268 -40717396 + L2 LINE L2 2830 3272 0 2190 97 4 0 chr1 241477013 241477292 -40716372 - AluSx SINE Alu -32 280 1 1875 130 90 0 chr1 241478472 241478749 -40714915 - AluSq SINE Alu -11 302 1 410 271 0 0 chr1 241478777 241478873 -40714791 - MIR3 SINE MIR -27 181 86 415 235 314 7 chr1 241479950 241480103 -40713561 - MER105 DNA DNA -4 200 1 222 62 0 0 chr1 241480109 241480141 -40713523 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 653 161 77 54 chr1 241480400 241480530 -40713134 + AluJo SINE Alu 2 134 -178 2604 199 30 12 chr1 241480775 241481333 -40712331 - L1MB8 LINE L1 -2 6176 5609 261 206 0 48 chr1 241481554 241481617 -40712047 - L1MB8 LINE L1 -552 5622 5563 7093 211 38 4 chr1 241481965 241483608 -40710056 - L1MB8 LINE L1 -1010 5136 3439 2028 169 27 6 chr1 241483608 241483974 -40709690 + L1MB3 LINE L1 5801 6174 -9 2318 98 0 0 chr1 241484136 241484433 -40709231 - AluY SINE Alu -14 297 1 2641 133 25 5 chr1 241484641 241485038 -40708626 + L1PA15 LINE L1 5757 6161 -4 1953 195 18 8 chr1 241485038 241485422 -40708242 - L1MB4 LINE L1 -6 6174 5786 25 0 0 0 chr1 241485716 241485741 -40707923 + AT_rich Low_complexity Low_complexity 1 25 0 2127 115 3 31 chr1 241486293 241486614 -40707050 + AluSx SINE Alu 1 312 0 399 296 80 19 chr1 241487076 241487192 -40706472 + MIR SINE MIR 37 167 -95 6274 112 14 10 chr1 241487192 241488251 -40705413 + L1PA12 LINE L1 5105 6167 -1 399 296 80 19 chr1 241488251 241488296 -40705368 + MIR SINE MIR 167 208 -54 184 303 91 0 chr1 241488405 241488471 -40705193 + L2 LINE L2 3197 3268 -4 198 71 0 0 chr1 241488565 241488593 -40705071 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 2138 79 10 46 chr1 241489601 241489906 -40703758 + AluY SINE Alu 1 294 -17 644 66 0 11 chr1 241489906 241489997 -40703667 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 199 271 171 0 chr1 241491115 241491185 -40702479 + L2 LINE L2 3232 3313 0 303 243 44 66 chr1 241491540 241491676 -40701988 - L1ME4a LINE L1 -13 6108 5976 772 194 0 8 chr1 241494424 241494553 -40699111 - AluJb SINE Alu -18 294 167 907 359 77 25 chr1 241495514 241495610 -40698054 + ERVL LTR ERVL 2741 2831 -2823 1911 149 0 3 chr1 241495610 241495918 -40697746 + AluSx SINE Alu 1 307 -5 321 26 0 0 chr1 241495918 241495956 -40697708 + (TA)n Simple_repeat Simple_repeat 2 39 0 907 359 77 25 chr1 241495956 241496340 -40697324 + ERVL LTR ERVL 2831 3194 -2460 212 0 36 0 chr1 241496340 241496368 -40697296 + (TAA)n Simple_repeat Simple_repeat 2 30 0 907 359 77 25 chr1 241496368 241496734 -40696930 + ERVL LTR ERVL 3194 3594 -2060 1153 251 16 56 chr1 241496920 241497295 -40696369 - MLT1A1 LTR MaLR 0 365 6 259 282 94 40 chr1 241497493 241497642 -40696022 + ERVL LTR ERVL 4318 4474 -1290 486 318 91 40 chr1 241497719 241498272 -40695392 + ERVL LTR ERVL 4533 5129 -635 1357 275 68 10 chr1 241498325 241498739 -40694925 + L1MEc LINE L1 37 474 -5922 607 266 50 53 chr1 241498764 241498833 -40694831 + L1MEc LINE L1 1319 1387 -5009 2930 188 24 27 chr1 241498833 241499431 -40694233 + L1MB3 LINE L1 5547 6144 -39 2080 143 16 0 chr1 241499431 241499738 -40693926 + AluSq SINE Alu 1 312 -1 2930 188 24 27 chr1 241499738 241499762 -40693902 + L1MB3 LINE L1 6144 6167 -16 607 266 50 53 chr1 241499762 241500072 -40693592 + L1MEc LINE L1 1387 1697 -4699 1511 275 30 55 chr1 241500073 241500597 -40693067 + LTR40a LTR ERVL 3 513 -6 936 249 28 21 chr1 241500605 241500890 -40692774 + L1MEc LINE L1 1699 1985 -4411 1447 116 48 5 chr1 241500890 241501097 -40692567 + AluSx SINE Alu 1 216 -96 798 162 0 0 chr1 241501097 241501239 -40692425 + L1MEc LINE L1 1982 2123 -4273 283 273 61 0 chr1 241501239 241501305 -40692359 - Tigger5 DNA MER2_type -2123 200 131 676 282 65 18 chr1 241501359 241501636 -40692028 + L1MEc LINE L1 3197 3486 -2729 941 153 19 50 chr1 241501642 241501922 -40691742 - MER93b LTR ERV1 -5 368 1 915 266 15 8 chr1 241501922 241502271 -40691393 + L1MEc LINE L1 3483 3881 -2334 2069 183 60 31 chr1 241502273 241502720 -40690944 - LTR2B LTR ERV1 0 490 31 263 135 0 0 chr1 241502738 241502775 -40690889 + L1MEc LINE L1 3880 3916 -2299 833 233 6 6 chr1 241502779 241502955 -40690709 - LTR40c LTR ERVL -281 184 9 229 313 10 31 chr1 241503627 241503723 -40689941 + MLT1L LTR MaLR 374 467 -148 1181 175 8 60 chr1 241504704 241504888 -40688776 + MER96B DNA MER1_type? 1 171 -246 2317 78 0 0 chr1 241504888 241505191 -40688473 - AluSx SINE Alu 0 303 1 1181 175 8 60 chr1 241505191 241505256 -40688408 + MER96B DNA MER1_type? 171 238 -179 2676 39 0 0 chr1 241505262 241505572 -40688092 - AluY SINE Alu -1 310 1 1193 262 42 64 chr1 241505685 241506215 -40687449 - MER34 LTR ERV1 -23 519 2 480 256 51 152 chr1 241506579 241506895 -40686769 + MLT1L LTR MaLR 111 484 -117 1174 238 159 10 chr1 241507136 241507531 -40686133 + LTR16A1 LTR ERVL 3 456 -1 2320 162 81 10 chr1 241507723 241508119 -40685545 - MSTB LTR MaLR -2 424 1 874 322 92 37 chr1 241508266 241508785 -40684879 + MLT1K LTR MaLR 35 582 -6 255 305 39 74 chr1 241508846 241508960 -40684704 - L1ME LINE L1 -307 5814 5698 2138 116 0 29 chr1 241508960 241509270 -40684394 - AluSx SINE Alu -3 309 9 255 305 39 74 chr1 241509270 241509411 -40684253 - L1ME LINE L1 -423 5698 5568 194 0 0 37 chr1 241509727 241509754 -40683910 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 246 139 0 23 chr1 241510075 241510118 -40683546 - Alu SINE Alu -115 185 144 215 30 0 30 chr1 241510120 241510153 -40683511 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 1977 23 0 0 chr1 241510153 241510368 -40683296 - L1PA4 LINE L1 -13 6142 5928 201 74 0 0 chr1 241510709 241510736 -40682928 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 507 213 67 53 chr1 241510849 241510999 -40682665 - L1ME3A LINE L1 0 6162 6011 906 203 34 0 chr1 241511109 241511286 -40682378 + MER58A DNA MER1_type 42 224 0 1143 107 0 0 chr1 241511795 241511954 -40681710 - AluSq SINE Alu -3 310 152 2269 167 11 11 chr1 241512083 241512448 -40681216 + MLT1A1 LTR MaLR 1 365 0 948 152 24 12 chr1 241513390 241513554 -40680110 + Tigger1 DNA MER2_type 1 166 -2252 337 200 0 82 chr1 241513557 241513642 -40680022 + Tigger1 DNA MER2_type 2338 2415 -3 1616 156 7 51 chr1 241514097 241514392 -40679272 + AluJo SINE Alu 1 282 -30 287 288 167 8 chr1 241514493 241514625 -40679039 + MIR SINE MIR 6 158 -104 1690 149 59 21 chr1 241514843 241515131 -40678533 + AluJo SINE Alu 1 299 -13 1993 137 0 16 chr1 241515878 241516184 -40677480 + AluSx SINE Alu 1 301 -11 1540 148 10 56 chr1 241516421 241516551 -40677113 - L1MB7 LINE L1 0 6184 6050 2181 91 38 3 chr1 241516551 241516838 -40676826 - AluSq SINE Alu -16 297 1 1540 148 10 56 chr1 241516838 241517010 -40676654 - L1MB7 LINE L1 -134 6050 5896 1949 121 0 3 chr1 241517015 241517297 -40676367 - AluSx SINE Alu 0 312 32 1830 120 0 67 chr1 241517836 241518136 -40675528 + AluSx SINE Alu 1 280 -32 364 303 86 30 chr1 241518348 241518582 -40675082 + MLT1L LTR MaLR 165 411 -204 1159 79 0 0 chr1 241518720 241518860 -40674804 - AluSp/q SINE Alu -15 298 159 4143 140 19 11 chr1 241519195 241519824 -40673840 + MER41B LTR ERV1 2 635 0 772 279 82 29 chr1 241521060 241521340 -40672324 - MER102b DNA MER1_type -14 327 33 378 91 0 0 chr1 241521424 241521479 -40672185 + (GA)n Simple_repeat Simple_repeat 1 55 0 1381 183 32 8 chr1 241522657 241522909 -40670755 + AluJo SINE Alu 9 266 -46 1424 141 206 4 chr1 241523689 241523804 -40669860 + AluJo SINE Alu 2 93 -209 309 26 0 0 chr1 241523804 241523842 -40669822 + (CA)n Simple_repeat Simple_repeat 1 38 0 1424 141 206 4 chr1 241523842 241523974 -40669690 + AluJo SINE Alu 93 299 -3 2365 88 0 0 chr1 241524135 241524430 -40669234 + AluSx SINE Alu 3 297 -15 367 344 47 8 chr1 241525084 241525212 -40668452 - L2 LINE L2 -18 3254 3122 473 183 12 0 chr1 241525227 241525309 -40668355 - LTR49 LTR ERV1 0 595 513 1371 141 0 74 chr1 241525338 241525404 -40668260 + AluJb SINE Alu 84 153 -159 2239 108 3 0 chr1 241525404 241525700 -40667964 + AluSg SINE Alu 1 297 -13 1371 141 0 74 chr1 241525700 241525875 -40667789 + AluJb SINE Alu 153 307 -5 1350 183 187 62 chr1 241525881 241526384 -40667280 - LTR48B LTR ERV1 -78 566 1 184 299 90 96 chr1 241526416 241526593 -40667071 - L2 LINE L2 -182 3090 2915 192 40 0 0 chr1 241526608 241526633 -40667031 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 519 145 35 89 chr1 241526761 241526982 -40666682 + MER89 LTR ERV1 1 307 -252 7849 121 24 50 chr1 241526982 241527569 -40666095 - HSMAR2 DNA Mariner 0 1302 702 782 172 0 0 chr1 241527569 241527685 -40665979 - FLAM_A SINE Alu -17 116 1 7849 121 24 50 chr1 241527685 241528090 -40665574 - HSMAR2 DNA Mariner -600 702 350 2371 96 0 0 chr1 241528090 241528393 -40665271 - AluSc SINE Alu -6 303 1 7849 121 24 50 chr1 241528393 241528733 -40664931 - HSMAR2 DNA Mariner -952 350 3 934 172 0 0 chr1 241528832 241528989 -40664675 + MER89 LTR ERV1 403 559 0 793 217 28 76 chr1 241529007 241529256 -40664408 - Charlie2b DNA MER1_type -2541 321 85 1448 196 50 17 chr1 241529293 241529594 -40664070 - AluJb SINE Alu -1 311 1 295 252 145 30 chr1 241529694 241529825 -40663839 + L2 LINE L2 3168 3313 0 260 360 89 19 chr1 241529817 241530031 -40663633 - L2 LINE L2 -1845 1469 1241 * 1817 201 160 20 chr1 241530148 241530591 -40663073 + MLT1D LTR MaLR 1 505 0 394 167 0 42 chr1 241530650 241530722 -40662942 - MER5A DNA MER1_type -80 109 41 1994 173 68 34 chr1 241530962 241531406 -40662258 + LTR2B LTR ERV1 32 490 0 2285 84 10 0 chr1 241531470 241531767 -40661897 - AluSq SINE Alu -13 300 1 226 276 95 60 chr1 241532161 241532277 -40661387 - L2 LINE L2 -19 3294 3175 237 266 156 0 chr1 241532994 241533058 -40660606 + L1MC1 LINE L1 6158 6231 -102 409 202 22 11 chr1 241533058 241533147 -40660517 + L1MC2 LINE L1 6244 6333 -11 187 328 0 16 chr1 241533755 241533816 -40659848 + L2 LINE L2 3254 3313 0 492 188 16 39 chr1 241533909 241534037 -40659627 - L1MC2 LINE L1 -278 6066 5942 * 2186 180 54 25 chr1 241534023 241534675 -40658989 - L1MC2 LINE L1 -745 5401 5043 29 0 0 0 chr1 241534678 241534707 -40658957 + AT_rich Low_complexity Low_complexity 1 29 0 327 192 154 0 chr1 241534735 241534813 -40658851 - AluJ/FLAM SINE Alu -210 92 3 22 0 0 30 chr1 241534813 241534829 -40658835 + AT_rich Low_complexity Low_complexity 1 16 -16 2436 52 7 10 chr1 241534829 241535138 -40658526 - AluY SINE Alu -3 308 1 22 0 0 30 chr1 241535138 241535154 -40658510 + AT_rich Low_complexity Low_complexity 16 32 0 2559 129 43 21 chr1 241535571 241535990 -40657674 - MSTA LTR MaLR 0 428 1 214 288 0 106 chr1 241536060 241536230 -40657434 - L2 LINE L2 -644 2670 2519 859 171 0 0 chr1 241536268 241536391 -40657273 + FLAM_A SINE Alu 1 123 -10 235 264 8 85 chr1 241536456 241536585 -40657079 - L2 LINE L2 -911 2403 2285 3727 152 79 30 chr1 241536692 241537385 -40656279 - LTR8A LTR ERV1 0 727 1 2060 114 0 0 chr1 241537769 241538058 -40655606 + AluSx SINE Alu 22 310 -2 1930 180 101 49 chr1 241538118 241538585 -40655079 - MLT1D LTR MaLR -10 495 5 1909 140 15 0 chr1 241538851 241539123 -40654541 - AluSx SINE Alu -18 294 19 3690 150 16 4 chr1 241539807 241540422 -40653242 - MER41B LTR ERV1 -15 597 1 1176 200 98 14 chr1 241540423 241540718 -40652946 - L1MB8 LINE L1 -99 6079 5760 986 123 0 77 chr1 241540807 241540856 -40652808 - MSTB1 LTR MaLR 0 432 381 1896 137 7 11 chr1 241540856 241541176 -40652488 - AluSp SINE Alu 0 319 1 986 123 0 77 chr1 241541176 241541295 -40652369 - MSTB1 LTR MaLR -51 381 276 665 290 55 34 chr1 241541642 241541729 -40651935 - MIR SINE MIR -10 252 168 2186 132 85 20 chr1 241541729 241542071 -40651593 + THE1B LTR MaLR 1 364 0 12915 75 9 7 chr1 241542071 241542172 -40651492 + THE1B-int LTR MaLR 1 100 -1480 2329 115 0 0 chr1 241542172 241542476 -40651188 + AluSp SINE Alu 1 304 -9 12915 75 9 7 chr1 241542476 241543950 -40649714 + THE1B-int LTR MaLR 100 1580 0 2311 123 76 18 chr1 241543952 241544294 -40649370 + THE1B LTR MaLR 3 364 0 665 290 55 34 chr1 241544294 241544445 -40649219 - MIR SINE MIR -94 168 6 1647 170 36 4 chr1 241544472 241544749 -40648915 + AluJo SINE Alu 5 290 -22 1033 190 4 77 chr1 241545227 241545501 -40648163 - AluJb SINE Alu -9 303 50 890 202 75 24 chr1 241545701 241545953 -40647711 - MER33 DNA MER1_type -1 323 59 2159 97 7 16 chr1 241545954 241546263 -40647401 - AluSq SINE Alu -7 306 1 1447 168 121 7 chr1 241546676 241546956 -40646708 + AluSx SINE Alu 1 312 0 3525 115 65 2 chr1 241547020 241547540 -40646124 - MER41A LTR ERV1 0 554 2 560 110 0 0 chr1 241547810 241547883 -40645781 - AluSg/x SINE Alu -24 288 216 906 82 8 43 chr1 241547905 241548274 -40645390 + (TA)n Simple_repeat Simple_repeat 1 356 0 288 0 0 0 chr1 241548274 241548306 -40645358 + (CA)n Simple_repeat Simple_repeat 2 33 0 1728 107 123 4 chr1 241548753 241549014 -40644650 - AluSg SINE Alu -18 292 1 1802 129 23 0 chr1 241549087 241549377 -40644287 + AluSg SINE Alu 13 308 0 21 82 0 0 chr1 241549669 241549718 -40643946 + AT_rich Low_complexity Low_complexity 1 49 0 1896 139 0 21 chr1 241550035 241550346 -40643318 + AluSx SINE Alu 1 305 0 2187 91 0 32 chr1 241550364 241550673 -40642991 + AluSg SINE Alu 1 299 -11 213 327 106 0 chr1 241550754 241550858 -40642806 - L2 LINE L2 -39 3233 3119 2322 85 0 35 chr1 241550999 241551318 -40642346 + AluSg SINE Alu 1 308 -2 781 209 94 25 chr1 241552313 241552514 -40641150 - MER20 DNA MER1_type -4 215 1 2377 90 0 0 chr1 241553195 241553496 -40640168 - AluY SINE Alu -10 301 1 2392 59 0 16 chr1 241553565 241553868 -40639796 - AluY SINE Alu -13 298 1 1442 206 35 7 chr1 241553931 241554217 -40639447 + AluJo SINE Alu 3 296 -16 305 294 19 44 chr1 241554218 241554378 -40639286 - L1MC4 LINE L1 -17 8025 7870 245 233 37 0 chr1 241554927 241554994 -40638670 + MIR SINE MIR 52 126 -82 21 89 0 0 chr1 241555832 241555888 -40637776 + AT_rich Low_complexity Low_complexity 1 56 0 209 59 0 29 chr1 241556442 241556476 -40637188 - L2 LINE L2 0 3313 3281 21 57 0 0 chr1 241556739 241556774 -40636890 + GC_rich Low_complexity Low_complexity 1 35 0 218 200 127 0 chr1 241556973 241557028 -40636636 - L2 LINE L2 -5 3267 3206 211 333 151 0 chr1 241557052 241557145 -40636519 - MIR SINE MIR -109 153 47 192 286 120 30 chr1 241558585 241558672 -40634992 + MIR SINE MIR 64 168 -94 5603 131 14 10 chr1 241558672 241559731 -40633933 + L1PA12 LINE L1 5105 6167 -1 192 286 120 30 chr1 241559731 241559776 -40633888 + MIR SINE MIR 168 208 -54 202 321 18 55 chr1 241559826 241559935 -40633729 + L2 LINE L2 3187 3291 -22 198 71 0 0 chr1 241560045 241560073 -40633591 + (TTTC)n Simple_repeat Simple_repeat 4 31 0 957 238 86 79 chr1 241560610 241560768 -40632896 + L2 LINE L2 2472 2627 -686 2485 65 10 0 chr1 241560768 241561075 -40632589 - AluY SINE Alu -1 310 1 2015 105 66 3 chr1 241561075 241561360 -40632304 - AluSx SINE Alu -8 304 2 957 238 86 79 chr1 241561360 241561438 -40632226 + L2 LINE L2 2912 2986 -327 234 0 0 0 chr1 241561438 241561464 -40632200 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2262 92 0 0 chr1 241561467 241561749 -40631915 - AluSx SINE Alu -30 282 1 957 238 86 79 chr1 241561749 241562334 -40631330 + L2 LINE L2 2987 3311 -2 314 98 0 0 chr1 241562370 241562411 -40631253 + FAM SINE Alu 116 156 -19 447 19 0 0 chr1 241562414 241562466 -40631198 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1048 209 0 19 chr1 241562474 241562689 -40630975 + AluJo SINE Alu 1 211 -101 22 0 0 0 chr1 241563225 241563247 -40630417 + GC_rich Low_complexity Low_complexity 1 22 0 339 113 0 0 chr1 241563683 241563745 -40629919 + (CAG)n Simple_repeat Simple_repeat 3 64 0 231 36 0 0 chr1 241566343 241566371 -40627293 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 257 0 54 chr1 241567053 241567127 -40626537 - MIR SINE MIR -93 115 46 2586 50 0 0 chr1 241568317 241568614 -40625050 - AluY SINE Alu -14 297 1 484 209 93 28 chr1 241568720 241568902 -40624762 - MIR SINE MIR -11 251 58 2014 120 4 0 chr1 241569057 241569333 -40624331 - AluSq SINE Alu -8 305 29 192 325 79 18 chr1 241569996 241570110 -40623554 + MIR SINE MIR 124 244 -18 201 39 0 0 chr1 241570259 241570285 -40623379 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 383 68 17 0 chr1 241572451 241572510 -40621154 + (TG)n Simple_repeat Simple_repeat 2 61 0 1241 147 0 55 chr1 241572510 241572728 -40620936 - AluJo SINE Alu -28 284 79 2199 123 0 3 chr1 241573824 241574125 -40619539 - AluSx SINE Alu -12 300 1 2484 41 3 7 chr1 241574846 241575137 -40618527 - AluY SINE Alu -21 290 1 34 55 0 0 chr1 241575165 241575220 -40618444 + AT_rich Low_complexity Low_complexity 1 55 0 324 317 73 4 chr1 241575841 241576054 -40617610 - L1M4 LINE L1 -407 5777 5550 2294 106 3 3 chr1 241576057 241576368 -40617296 - AluSx SINE Alu -1 311 1 349 302 43 40 chr1 241576368 241576696 -40616968 - L1M4 LINE L1 -1489 4657 4329 191 292 112 80 chr1 241577295 241577607 -40616057 + L2 LINE L2 2217 2538 -776 2324 86 7 3 chr1 241577642 241577943 -40615721 - AluSq SINE Alu -11 302 1 279 354 125 5 chr1 241578094 241578286 -40615378 + L3 LINE CR1 1357 1571 -6 2292 98 0 0 chr1 241579713 241580000 -40613664 + AluSx SINE Alu 1 287 -25 356 303 18 0 chr1 241580158 241580267 -40613397 + MIR3 SINE MIR 83 193 -15 213 39 0 0 chr1 241580812 241580838 -40612826 + (TTA)n Simple_repeat Simple_repeat 1 26 0 231 295 29 97 chr1 241581142 241581320 -40612344 + MIR SINE MIR 10 174 -78 466 252 112 44 chr1 241582030 241582213 -40611451 - MIR SINE MIR 0 262 62 4138 86 5 16 chr1 241582213 241582773 -40610891 - MER41A LTR ERV1 0 554 1 466 252 112 44 chr1 241582773 241582795 -40610869 - MIR SINE MIR -200 62 43 2358 88 3 0 chr1 241583090 241583387 -40610277 - AluSc SINE Alu -9 300 3 2260 94 20 0 chr1 241584241 241584539 -40609125 + AluSx SINE Alu 1 304 -8 329 235 73 103 chr1 241584985 241585257 -40608407 - L1MC5 LINE L1 -74 7887 7624 235 222 105 62 chr1 241585517 241585612 -40608052 - L1MC4 LINE L1 -737 7224 7135 2422 89 0 7 chr1 241585612 241585915 -40607749 - AluSc SINE Alu -8 301 1 235 222 105 62 chr1 241585915 241586138 -40607526 - L1MC4 LINE L1 -826 7135 6911 274 257 0 14 chr1 241586279 241586353 -40607311 - MIR SINE MIR -26 236 164 387 211 32 11 chr1 241586373 241586468 -40607196 - L1ME LINE L1 -454 5667 5571 2604 171 6 29 chr1 241586637 241587152 -40606512 - MER41B LTR ERV1 -9 597 134 281 207 69 0 chr1 241587245 241587303 -40606361 - MLT1G1 LTR MaLR -424 171 110 326 298 81 32 chr1 241587309 241587557 -40606107 - L2 LINE L2 -1115 2199 1940 951 197 0 11 chr1 241587557 241587740 -40605924 + AluJo SINE Alu 127 307 -5 962 308 156 25 chr1 241587761 241588671 -40604993 - L2 LINE L2 -1431 1883 855 503 284 186 14 chr1 241588693 241589131 -40604533 - L2 LINE L2 0 3313 2777 1799 171 30 19 chr1 241589131 241589500 -40604164 - MER83C LTR ERV1 0 373 1 503 284 186 14 chr1 241589500 241589559 -40604105 - L2 LINE L2 -536 2777 2729 700 306 51 55 chr1 241589561 241590007 -40603657 - L2 LINE L2 -2459 855 410 2418 81 0 3 chr1 241590007 241590304 -40603360 + AluSg SINE Alu 1 296 -14 700 306 51 55 chr1 241590304 241590403 -40603261 - L2 LINE L2 -2904 410 312 675 188 49 90 chr1 241590408 241590631 -40603033 + MER20 DNA MER1_type 5 218 -1 757 178 45 13 chr1 241591231 241591388 -40602276 + MER58C DNA MER1_type 44 205 -10 1906 142 35 10 chr1 241591835 241592123 -40601541 + AluSx SINE Alu 1 295 -17 229 262 24 4 chr1 241592153 241592281 -40601383 - MER5B DNA MER1_type -3 175 1 2436 59 3 43 chr1 241592326 241592648 -40601016 - AluY SINE Alu -2 309 1 279 0 0 0 chr1 241592695 241592726 -40600938 + (A)n Simple_repeat Simple_repeat 1 31 0 208 135 0 0 chr1 241593022 241593059 -40600605 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 1084 119 7 0 chr1 241593059 241593210 -40600454 - AluSq SINE Alu -24 289 138 270 0 0 0 chr1 241593210 241593240 -40600424 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2104 83 3 66 chr1 241593240 241593542 -40600122 - AluSq SINE Alu -30 283 1 1006 223 127 19 chr1 241593595 241593855 -40599809 + AluJo SINE Alu 2 289 -13 228 67 0 0 chr1 241594465 241594495 -40599169 + (A)n Simple_repeat Simple_repeat 1 30 0 3136 114 7 59 chr1 241594605 241595149 -40598515 - L1MB3 LINE L1 -2 6181 5666 2353 95 0 0 chr1 241595629 241595925 -40597739 - AluSg SINE Alu -14 296 1 225 287 11 46 chr1 241597649 241597736 -40595928 - L2 LINE L2 -1 3271 3188 702 119 0 37 chr1 241598081 241598190 -40595474 - AluSx SINE Alu -14 296 192 1025 117 7 0 chr1 241598194 241598331 -40595333 - AluSx SINE Alu -174 138 1 386 245 43 135 chr1 241598344 241598450 -40595214 - L2 LINE L2 -554 2760 2646 1828 166 0 7 chr1 241598450 241598739 -40594925 - AluJo SINE Alu -25 287 1 386 245 43 135 chr1 241598739 241599048 -40594616 - L2 LINE L2 -668 2646 2383 2140 131 0 0 chr1 241599835 241600133 -40593531 - AluSx SINE Alu -14 298 1 2259 105 17 0 chr1 241600465 241600761 -40592903 - AluSx SINE Alu -11 301 1 1938 144 0 3 chr1 241601256 241601563 -40592101 - AluSx SINE Alu 0 306 1 207 328 172 5 chr1 241601994 241602198 -40591466 + MIR SINE MIR 8 245 -17 2281 96 3 10 chr1 241602384 241602685 -40590979 + AluSx SINE Alu 1 299 -13 201 358 134 4 chr1 241602944 241603176 -40590488 - L2 LINE L2 -724 2590 2329 926 191 27 50 chr1 241603882 241604102 -40589562 + MER20 DNA MER1_type 2 216 -3 1560 178 13 30 chr1 241604127 241604430 -40589234 - AluJo SINE Alu -14 298 1 280 278 31 10 chr1 241605000 241605097 -40588567 + MIR SINE MIR 161 259 -3 1826 160 19 22 chr1 241605295 241605608 -40588056 + AluJo SINE Alu 1 312 0 2242 117 7 0 chr1 241606638 241606938 -40586726 - AluSx SINE Alu -10 302 1 2354 95 3 0 chr1 241607750 241608054 -40585610 + AluSg SINE Alu 1 305 -5 1005 206 13 31 chr1 241608232 241608460 -40585204 - MER58A DNA MER1_type 0 224 1 1993 109 95 0 chr1 241608769 241609053 -40584611 + AluSx SINE Alu 1 311 -1 278 285 54 59 chr1 241609127 241609348 -40584316 - L2 LINE L2 -543 2771 2552 2175 118 0 23 chr1 241609377 241609682 -40583982 + AluSx SINE Alu 1 298 -14 995 159 34 0 chr1 241609922 241610098 -40583566 - MER5A DNA MER1_type -7 182 1 367 312 85 39 chr1 241610141 241610423 -40583241 - L2 LINE L2 -820 2494 2200 469 240 70 8 chr1 241611217 241611346 -40582318 - MIR SINE MIR -24 238 102 224 291 142 61 chr1 241611794 241611942 -40581722 - MIR3 SINE MIR -8 200 41 1944 113 0 60 chr1 241612304 241612629 -40581035 - AluSx SINE Alu 0 307 1 207 0 0 0 chr1 241613435 241613458 -40580206 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 228 286 0 0 chr1 241614420 241614476 -40579188 + CT-rich Low_complexity Low_complexity 5 60 0 1241 193 117 8 chr1 241616490 241616754 -40576910 - AluSg1 SINE Alu -1 308 16 2225 92 0 36 chr1 241617070 241617374 -40576290 + AluY SINE Alu 10 302 -9 1749 119 0 4 chr1 241617380 241617616 -40576048 + AluSx SINE Alu 1 235 -77 204 40 0 0 chr1 241617625 241617650 -40576014 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 473 301 94 33 chr1 241618076 241618289 -40575375 - MIR SINE MIR -17 245 20 348 335 46 23 chr1 241618318 241618452 -40575212 + L2 LINE L2 2553 2693 -621 937 213 0 12 chr1 241618452 241618616 -40575048 - FRAM SINE Alu -4 162 1 348 335 46 23 chr1 241618616 241618654 -40575010 + L2 LINE L2 2693 2729 -585 301 323 28 12 chr1 241618774 241618881 -40574783 - MER5A DNA MER1_type -35 143 44 745 105 22 33 chr1 241619137 241619318 -40574346 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 871 137 0 11 chr1 241619302 241619484 -40574180 + (GA)n Simple_repeat Simple_repeat 1 180 0 2481 57 27 0 chr1 241619658 241619959 -40573705 + AluY SINE Alu 1 309 -2 1956 153 0 13 chr1 241622722 241623030 -40570634 - AluJo SINE Alu -8 304 1 280 254 236 0 chr1 241623893 241624003 -40569661 + MIR SINE MIR 78 213 -49 1531 169 93 18 chr1 241624345 241624623 -40569041 - AluJo SINE Alu -3 299 1 2100 104 30 0 chr1 241624794 241625091 -40568573 + AluSx SINE Alu 1 306 -6 286 354 48 38 chr1 241625216 241625507 -40568157 - L2 LINE L2 -143 3129 2836 750 99 8 83 chr1 241625611 241625732 -40567932 - HY1 scRNA scRNA 0 112 1 366 156 0 0 chr1 241625777 241625841 -40567823 + CT-rich Low_complexity Low_complexity 1 64 0 1727 178 7 14 chr1 241625856 241626149 -40567515 - AluJb SINE Alu -21 291 1 1422 193 35 21 chr1 241626246 241626536 -40567128 - AluJo SINE Alu -18 294 1 1516 176 37 7 chr1 241626916 241627037 -40566627 + AluJo SINE Alu 1 117 -195 180 0 0 0 chr1 241627037 241627057 -40566607 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1516 176 37 7 chr1 241627057 241627207 -40566457 + AluJo SINE Alu 117 280 -32 229 149 30 30 chr1 241628527 241628594 -40565070 + GA-rich Low_complexity Low_complexity 3 69 0 261 201 26 0 chr1 241628665 241628728 -40564936 - MIR SINE MIR -41 167 101 1095 184 0 41 chr1 241628814 241629010 -40564654 + AluJo SINE Alu 1 188 -124 23 0 0 0 chr1 241629018 241629041 -40564623 + AT_rich Low_complexity Low_complexity 1 23 0 208 197 171 13 chr1 241629259 241629335 -40564329 + MIR SINE MIR 31 118 -90 543 112 0 0 chr1 241630846 241630935 -40562729 + (TA)n Simple_repeat Simple_repeat 2 90 0 276 30 0 0 chr1 241630934 241630967 -40562697 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 21 36 0 0 chr1 241631002 241631030 -40562634 + AT_rich Low_complexity Low_complexity 1 28 0 2769 258 74 72 chr1 241631042 241632248 -40561416 + L1M4 LINE L1 3515 4726 -1420 1856 93 0 8 chr1 241632248 241632506 -40561158 + AluY SINE Alu 40 295 -16 2769 258 74 72 chr1 241632506 241632937 -40560727 + L1M4 LINE L1 4726 5155 -991 878 233 0 0 chr1 241632939 241633111 -40560553 + AluJb SINE Alu 131 302 -10 2283 104 0 0 chr1 241633143 241633440 -40560224 + AluSg SINE Alu 1 297 -13 1731 276 131 34 chr1 241633455 241634821 -40558843 - L1MEd LINE L1 -2687 3442 2209 1544 162 0 86 chr1 241634821 241635153 -40558511 - AluJo SINE Alu 0 311 6 1731 276 131 34 chr1 241635153 241636129 -40557535 - L1MEd LINE L1 -3920 2209 855 1684 164 3 23 chr1 241636129 241636428 -40557236 - AluJo SINE Alu -11 301 9 1731 276 131 34 chr1 241636428 241636565 -40557099 - L1MEd LINE L1 -5274 855 733 21 0 0 0 chr1 241636589 241636610 -40557054 + AT_rich Low_complexity Low_complexity 1 21 0 209 98 24 0 chr1 241637092 241637133 -40556531 + (TA)n Simple_repeat Simple_repeat 1 42 0 2166 123 0 0 chr1 241637196 241637489 -40556175 - AluSq SINE Alu -20 293 1 372 303 44 62 chr1 241637494 241637799 -40555865 - L1ME4a LINE L1 -210 5911 5613 2107 144 0 0 chr1 241637799 241638111 -40555553 + AluSx SINE Alu 1 312 0 372 303 44 62 chr1 241638111 241638211 -40555453 - L1ME4a LINE L1 -508 5613 5513 744 226 30 49 chr1 241638242 241638406 -40555258 - FRAM SINE Alu -5 161 1 1827 118 96 0 chr1 241638754 241639024 -40554640 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 241639122 241639144 -40554520 + AT_rich Low_complexity Low_complexity 1 22 0 1637 180 11 14 chr1 241639265 241639548 -40554116 + AluJo SINE Alu 1 282 -30 1660 111 0 0 chr1 241639890 241640106 -40553558 + AluSc SINE Alu 1 216 -93 1568 142 20 51 chr1 241640428 241640724 -40552940 - AluJb SINE Alu -15 297 11 24 0 0 0 chr1 241640791 241640815 -40552849 + AT_rich Low_complexity Low_complexity 1 24 0 219 69 0 0 chr1 241643149 241643178 -40550486 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 294 0 0 chr1 241643569 241643620 -40550044 - MIR SINE MIR -68 140 90 2363 106 0 0 chr1 241643883 241644195 -40549469 - AluSx SINE Alu 0 312 1 1621 195 3 35 chr1 241645311 241645624 -40548040 - AluJo SINE Alu -9 303 1 24 0 0 0 chr1 241645753 241645777 -40547887 + AT_rich Low_complexity Low_complexity 1 24 0 3864 173 16 6 chr1 241645777 241646464 -40547200 - L1MB2 LINE L1 -3 6168 5475 1108 150 86 0 chr1 241646470 241646657 -40547007 - AluJb SINE Alu -26 286 84 1789 158 25 17 chr1 241646674 241647198 -40546466 - L1MB2 LINE L1 -688 5495 4966 1625 186 44 0 chr1 241649395 241649691 -40543973 - AluJb SINE Alu -1 311 3 617 219 117 49 chr1 241649931 241650136 -40543528 + MIR SINE MIR 9 227 -35 22 35 0 0 chr1 241650142 241650171 -40543493 + AT_rich Low_complexity Low_complexity 1 29 0 2197 114 7 0 chr1 241651526 241651824 -40541840 - AluSx SINE Alu -10 302 3 2042 126 20 0 chr1 241651961 241652263 -40541401 - AluSx SINE Alu -4 308 1 185 95 95 24 chr1 241652969 241653011 -40540653 + L2 LINE L2 3268 3312 -1 1819 183 3 3 chr1 241653865 241654176 -40539488 - AluJb SINE Alu -1 311 1 305 165 35 35 chr1 241654365 241654480 -40539184 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 236 266 0 16 chr1 241654490 241654554 -40539110 - L1MC4 LINE L1 -1339 6703 6641 22 0 0 0 chr1 241654865 241654887 -40538777 + AT_rich Low_complexity Low_complexity 1 22 0 2045 68 90 0 chr1 241655196 241655475 -40538189 - AluSg SINE Alu -6 304 1 198 0 0 0 chr1 241655477 241655499 -40538165 + (T)n Simple_repeat Simple_repeat 1 22 0 378 185 59 5 chr1 241655946 241656330 -40537334 + CT-rich Low_complexity Low_complexity 1 404 0 371 170 63 13 chr1 241656342 241656501 -40537163 + CT-rich Low_complexity Low_complexity 4 170 0 272 158 63 24 chr1 241656513 241656640 -40537024 + CT-rich Low_complexity Low_complexity 3 134 0 684 283 89 68 chr1 241657740 241658270 -40535394 - L2 LINE L2 -3 3310 2752 2412 79 0 16 chr1 241658405 241658720 -40534944 + AluSg SINE Alu 1 310 0 181 336 269 8 chr1 241658800 241658919 -40534745 + MIR3 SINE MIR 38 187 -21 2434 123 19 27 chr1 241660150 241660517 -40533147 - THE1B LTR MaLR 0 364 1 189 313 91 10 chr1 241660790 241660889 -40532775 + MIR SINE MIR 35 141 -121 385 325 87 5 chr1 241661883 241662089 -40531575 - MIR SINE MIR -6 256 34 514 315 36 18 chr1 241665119 241665338 -40528326 + L2 LINE L2 2563 2785 -529 231 60 60 0 chr1 241665447 241665497 -40528167 + T-rich Low_complexity Low_complexity 2 54 0 654 269 31 46 chr1 241665677 241665759 -40527905 + MIR SINE MIR 6 88 -174 2807 176 32 2 chr1 241665759 241666286 -40527378 - MER67A LTR ERV1 0 543 1 654 269 31 46 chr1 241666286 241666463 -40527201 + MIR SINE MIR 88 261 -1 2618 213 52 11 chr1 241666511 241667132 -40526532 - MER82 DNA MER2_type -7 646 1 1677 169 44 10 chr1 241667156 241667452 -40526212 + AluJo SINE Alu 1 306 -6 830 161 50 78 chr1 241667806 241667923 -40525741 + MER5A DNA MER1_type 15 127 -62 1942 117 0 4 chr1 241667923 241668196 -40525468 - AluSq SINE Alu -4 309 38 830 161 50 78 chr1 241668196 241668258 -40525406 + MER5A DNA MER1_type 127 189 0 3394 191 101 26 chr1 241668344 241669144 -40524520 + MER21B LTR ERV1 3 862 -1 1691 86 14 0 chr1 241669179 241669389 -40524275 - AluSx SINE Alu -99 213 1 2227 91 0 0 chr1 241670245 241670531 -40523133 + AluSg SINE Alu 1 286 -24 26 64 0 0 chr1 241670681 241670728 -40522936 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr1 241673045 241673070 -40520594 + AT_rich Low_complexity Low_complexity 1 25 0 235 167 0 0 chr1 241673920 241673968 -40519696 - AluJo SINE Alu -2 299 252 1256 162 9 9 chr1 241673968 241674178 -40519486 - AluJo SINE Alu -97 215 6 4061 103 17 0 chr1 241674653 241675244 -40518420 + L1PA10 LINE L1 5563 6163 -5 646 203 8 0 chr1 241675739 241675862 -40517802 + FLAM_A SINE Alu 1 124 -9 2140 107 0 3 chr1 241675889 241676180 -40517484 + AluSg SINE Alu 1 290 -20 2675 48 0 0 chr1 241676870 241677179 -40516485 - AluY SINE Alu -2 309 1 1991 138 0 26 chr1 241677310 241677622 -40516042 - AluJo SINE Alu -8 304 1 21 0 0 0 chr1 241677767 241677788 -40515876 + AT_rich Low_complexity Low_complexity 1 21 0 2251 59 0 30 chr1 241680436 241680741 -40512923 - AluY SINE Alu -15 296 1 2317 36 11 0 chr1 241680812 241681125 -40512539 + AluY SINE Alu 3 318 0 308 253 27 0 chr1 241682134 241682209 -40511455 + CT-rich Low_complexity Low_complexity 4 80 0 290 152 0 0 chr1 241683662 241683708 -40509956 + L2 LINE L2 3264 3309 -4 259 58 77 0 chr1 241684112 241684164 -40509500 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2476 78 0 0 chr1 241685454 241685763 -40507901 + AluY SINE Alu 1 309 -2 1749 191 0 3 chr1 241685970 241686264 -40507400 + AluJb SINE Alu 3 295 -17 577 297 74 0 chr1 241686467 241686669 -40506995 - MIR SINE MIR -26 236 20 2262 116 0 0 chr1 241686892 241687193 -40506471 - AluSx SINE Alu -11 301 1 1898 56 4 9 chr1 241687915 241688146 -40505518 + AluSg SINE Alu 64 293 -17 2530 79 0 0 chr1 241689187 241689492 -40504172 + AluSc SINE Alu 1 305 -4 585 177 197 27 chr1 241689613 241689760 -40503904 + FAM SINE Alu 1 172 -13 1769 167 0 13 chr1 241690835 241691141 -40502523 - AluJb SINE Alu -8 304 3 1112 257 69 20 chr1 241691277 241691627 -40502037 + L1M4 LINE L1 29 395 -6464 282 29 0 0 chr1 241691846 241691881 -40501783 + (TG)n Simple_repeat Simple_repeat 2 36 0 19323 92 9 11 chr1 241691901 241693033 -40500631 - L1PA7 LINE L1 0 6154 5021 1755 121 8 42 chr1 241693033 241693297 -40500367 - AluSx SINE Alu -12 300 46 19323 92 9 11 chr1 241693297 241695815 -40497849 - L1PA7 LINE L1 -1133 5021 2511 2172 171 75 2 chr1 241695838 241696266 -40497398 - LOR1b LTR ERV1 -2 459 1 2046 231 64 26 chr1 241696662 241697697 -40495967 + L1M4 LINE L1 1223 2287 -4672 587 161 0 0 chr1 241697913 241698006 -40495658 + FRAM SINE Alu 75 167 -9 348 24 0 0 chr1 241698066 241698107 -40495557 + (CA)n Simple_repeat Simple_repeat 2 42 0 3095 214 192 27 chr1 241698111 241699278 -40494386 + L1M4 LINE L1 4781 6140 -817 2394 82 3 0 chr1 241699278 241699569 -40494095 + AluSp SINE Alu 1 292 -21 3575 38 0 14 chr1 241699716 241700161 -40493503 + L1PA7 LINE L1 5716 6154 0 239 259 107 61 chr1 241700166 241700297 -40493367 + L2 LINE L2 1694 1830 -1484 1378 271 129 30 chr1 241700297 241701172 -40492492 + L2 LINE L2 2330 3310 -3 559 250 125 6 chr1 241701797 241701957 -40491707 + MIR SINE MIR 3 181 -81 190 344 125 23 chr1 241702044 241702172 -40491492 - L3 LINE CR1 -29 1548 1408 183 156 0 0 chr1 241703411 241703443 -40490221 + A-rich Low_complexity Low_complexity 1 32 0 1135 183 12 12 chr1 241703443 241703695 -40489969 + L1M4 LINE L1 6128 6379 -616 236 245 0 0 chr1 241704414 241704463 -40489201 + CT-rich Low_complexity Low_complexity 4 52 0 2073 105 44 10 chr1 241704736 241705030 -40488634 - AluSx SINE Alu -7 305 2 1935 136 3 35 chr1 241705120 241705437 -40488227 + AluJb SINE Alu 1 307 -5 2095 99 0 72 chr1 241707143 241707475 -40486189 - AluSc SINE Alu -1 308 1 2350 88 0 13 chr1 241708184 241708492 -40485172 + AluSx SINE Alu 1 304 -8 26 64 0 0 chr1 241709921 241709968 -40483696 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr1 241710474 241710495 -40483169 + AT_rich Low_complexity Low_complexity 1 21 0 1801 162 0 32 chr1 241710495 241710804 -40482860 - AluJo SINE Alu -11 301 3 2258 167 21 35 chr1 241711527 241711959 -40481705 - MSTB LTR MaLR 0 426 1 209 333 0 0 chr1 241712754 241712817 -40480847 - L2 LINE L2 0 3313 3251 573 261 55 18 chr1 241713978 241714196 -40479468 + L1ME3 LINE L1 5912 6137 -25 470 295 148 0 chr1 241715272 241715455 -40478209 + MIR SINE MIR 3 212 -50 25 31 0 0 chr1 241716312 241716344 -40477320 + AT_rich Low_complexity Low_complexity 1 32 0 2444 142 16 157 chr1 241717811 241718274 -40475390 - L1MA9 LINE L1 -186 6126 5738 271 153 0 51 chr1 241718274 241718333 -40475331 + U4 snRNA snRNA 7 62 -83 2444 142 16 157 chr1 241718333 241718551 -40475113 - L1MA9 LINE L1 -574 5738 5491 * 7063 148 37 15 chr1 241718550 241720080 -40473584 + L1MA9 LINE L1 3943 5500 -743 1705 155 82 3 chr1 241720636 241720953 -40472711 - L1P4 LINE L1 -507 5659 5318 979 112 89 6 chr1 241720957 241721136 -40472528 + MER6 DNA MER2_type 631 824 -41 2675 65 8 0 chr1 241721141 241721494 -40472170 - L1PA13 LINE L1 -4 6159 5804 2300 210 14 20 chr1 241721494 241722079 -40471585 - L1P4 LINE L1 -814 5332 4752 1522 128 20 0 chr1 241722081 241722331 -40471333 + L1PA16 LINE L1 5659 5913 -253 637 171 89 38 chr1 241722335 241722493 -40471171 + L1P LINE L1 4797 4962 -1184 1465 115 28 24 chr1 241722513 241722766 -40470898 + L1PA16 LINE L1 5913 6166 0 419 267 0 0 chr1 241723039 241723125 -40470539 - MIR SINE MIR -71 137 52 658 197 22 7 chr1 241723125 241723262 -40470402 - MLT1A2 LTR MaLR 0 374 236 562 151 0 186 chr1 241723266 241723438 -40470226 - Tigger3(Golem) DNA MER2_type -199 2830 1 2854 96 0 0 chr1 241724010 241724397 -40469267 + L1PA7 LINE L1 5768 6154 0 2210 110 10 0 chr1 241725724 241726025 -40467639 + AluSx SINE Alu 5 308 -4 340 20 0 40 chr1 241726652 241726702 -40466962 + L1PA5 LINE L1 6107 6154 0 182 406 0 10 chr1 241727445 241727541 -40466123 + MIR SINE MIR 46 140 -122 4495 146 5 8 chr1 241727544 241728812 -40464852 + L1PB1 LINE L1 4671 5933 -218 1888 55 16 12 chr1 241728912 241729168 -40464496 + L1PB1 LINE L1 5893 6149 -2 23 0 0 0 chr1 241729416 241729439 -40464225 + AT_rich Low_complexity Low_complexity 1 23 0 1151 196 26 67 chr1 241730314 241730660 -40463004 + MLT1A1 LTR MaLR 34 365 0 1989 128 0 46 chr1 241732144 241732471 -40461193 - AluSx SINE Alu 0 312 1 360 340 161 37 chr1 241732793 241733475 -40460189 + L2 LINE L2 1875 2641 -673 370 200 0 14 chr1 241733486 241733556 -40460108 + MER5A DNA MER1_type 1 69 -120 14020 171 30 35 chr1 241733569 241734610 -40459054 + L1MA4A LINE L1 3 1049 -5800 188 65 0 32 chr1 241734610 241734641 -40459023 + (CCCA)n Simple_repeat Simple_repeat 3 32 0 14020 171 30 35 chr1 241734641 241735657 -40458007 + L1MA4A LINE L1 1049 2069 -4780 2115 111 0 57 chr1 241735657 241735972 -40457692 + AluSc SINE Alu 1 297 -12 14020 171 30 35 chr1 241735972 241736717 -40456947 + L1MA4A LINE L1 2069 2791 -4058 2163 136 0 0 chr1 241736717 241737027 -40456637 + AluSx SINE Alu 1 310 -2 14020 171 30 35 chr1 241737027 241737120 -40456544 + L1MA4A LINE L1 2791 2883 -3966 12708 181 42 42 chr1 241737130 241739964 -40453700 + L1MA4A LINE L1 3106 5941 -1064 264 100 0 0 chr1 241739964 241740004 -40453660 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 12708 181 42 42 chr1 241740004 241740444 -40453220 + L1MA4A LINE L1 5941 6377 -628 271 65 43 0 chr1 241740444 241740490 -40453174 + (TA)n Simple_repeat Simple_repeat 2 49 0 12708 181 42 42 chr1 241740490 241740882 -40452782 + L1MA4A LINE L1 6377 6768 -237 2155 121 3 0 chr1 241741150 241741447 -40452217 - AluSp SINE Alu -15 298 1 353 263 218 0 chr1 241741961 241742094 -40451570 - MER5A DNA MER1_type 0 189 28 196 318 45 38 chr1 241742107 241742239 -40451425 + MIR SINE MIR 63 195 -67 573 208 0 9 chr1 241742244 241742350 -40451314 - FRAM SINE Alu -67 109 5 2420 84 0 0 chr1 241742458 241742769 -40450895 - AluY SINE Alu 0 311 1 208 276 0 52 chr1 241743006 241743064 -40450600 - L2 LINE L2 -12 3260 3206 196 333 148 0 chr1 241743682 241743763 -40449901 + L2 LINE L2 3179 3271 -1 310 241 127 63 chr1 241743829 241743987 -40449677 + MER5B DNA MER1_type 11 178 0 232 332 26 26 chr1 241744861 241744979 -40448685 + MIR SINE MIR 37 153 -66 938 69 0 0 chr1 241746310 241746441 -40447223 - L1P3 LINE L1 -713 5441 5311 512 158 61 0 chr1 241746543 241746625 -40447039 + AluJ/FLAM SINE Alu 11 97 -215 585 242 130 46 chr1 241746642 241746927 -40446737 - L2 LINE L2 -2032 1282 974 2389 103 0 6 chr1 241748029 241748341 -40445323 - AluSx SINE Alu -2 310 1 451 263 26 0 chr1 241751934 241752048 -40441616 + L2 LINE L2 3197 3313 0 322 345 31 49 chr1 241752585 241752808 -40440856 - MIR SINE MIR -12 250 32 254 200 15 15 chr1 241754480 241754545 -40439119 + MLT1J LTR MaLR 231 295 -216 295 231 147 0 chr1 241755465 241755608 -40438056 - HAL1 LINE L1 -1270 1237 1074 1595 265 173 21 chr1 241755629 241756377 -40437287 - L2 LINE L2 -680 2634 1774 812 281 53 43 chr1 241756394 241756861 -40436803 - HAL1 LINE L1 -1590 917 446 486 264 47 0 chr1 241757072 241757220 -40436444 - HAL1 LINE L1 -2348 159 5 432 248 88 29 chr1 241758235 241758372 -40435292 - MIR SINE MIR -1 261 117 1239 288 77 23 chr1 241759042 241759598 -40434066 + MLT1E LTR MaLR 1 586 -7 1636 168 0 41 chr1 241759892 241760184 -40433480 + AluJo SINE Alu 1 280 -32 213 291 127 22 chr1 241761052 241761186 -40432478 - MIR SINE MIR -56 206 59 2133 108 3 72 chr1 241761287 241761620 -40432044 - AluSx SINE Alu -2 310 1 211 318 134 70 chr1 241762407 241762608 -40431056 - MIR SINE MIR -28 234 21 305 145 16 0 chr1 241762783 241762845 -40430819 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr1 241765621 241765646 -40428018 + AT_rich Low_complexity Low_complexity 1 25 0 387 41 0 0 chr1 241765693 241765742 -40427922 + (CA)n Simple_repeat Simple_repeat 1 49 0 3720 147 73 0 chr1 241765793 241766518 -40427146 - L1MA9 LINE L1 -40 6272 5400 397 223 85 11 chr1 241766525 241766619 -40427045 - MIR SINE MIR -105 157 57 21 0 0 0 chr1 241766700 241766721 -40426943 + AT_rich Low_complexity Low_complexity 1 21 0 329 291 128 0 chr1 241766798 241766939 -40426725 - MER113 DNA MER1_type? -34 487 329 216 0 0 0 chr1 241766945 241766969 -40426695 + (T)n Simple_repeat Simple_repeat 1 24 0 2285 95 3 7 chr1 241767819 241768125 -40425539 + AluSg SINE Alu 1 305 -5 1782 189 28 11 chr1 241768252 241768611 -40425053 - MLT1A1 LTR MaLR 0 365 1 188 374 33 55 chr1 241768859 241768950 -40424714 + L2 LINE L2 3187 3275 -38 2102 153 0 26 chr1 241768975 241769321 -40424343 + MER1B DNA MER1_type 1 337 0 2089 120 10 0 chr1 241769462 241769753 -40423911 - AluSx SINE Alu -18 294 1 842 270 107 46 chr1 241771241 241772747 -40420917 - L1MDb LINE L1 -3682 2447 850 295 317 106 13 chr1 241772861 241773164 -40420500 + L1ME LINE L1 5259 5589 -532 8805 171 27 29 chr1 241773756 241775542 -40418122 - L1M4c LINE L1 -4585 1799 18 512 256 32 32 chr1 241775535 241775754 -40417910 - L1MDb LINE L1 -5243 876 658 * 2340 101 0 0 chr1 241776455 241776751 -40416913 - AluSg SINE Alu -14 296 1 4999 173 35 5 chr1 241776766 241778480 -40415184 - L1PA16 LINE L1 0 6166 4404 1368 300 110 30 chr1 241778542 241778907 -40414757 - L2 LINE L2 -188 3125 2791 1521 50 5 15 chr1 241778907 241779105 -40414559 - MER107 DNA MER1_type -1 196 1 1368 300 110 30 chr1 241779105 241779561 -40414103 - L2 LINE L2 -522 2791 2221 340 326 54 22 chr1 241780150 241780334 -40413330 - LTR41 LTR ERVL -583 190 1 22 70 0 0 chr1 241780639 241780682 -40412982 + AT_rich Low_complexity Low_complexity 1 43 0 968 164 7 0 chr1 241782347 241782493 -40411171 - FRAM SINE Alu -30 146 1 348 168 109 76 chr1 241832886 241833005 -40360659 - L1MA9 LINE L1 -38 6274 6152 501 172 84 106 chr1 241833015 241833213 -40360451 - L1MA9 LINE L1 -208 6092 5898 240 324 50 5 chr1 241833533 241833752 -40359912 - HAL1 LINE L1 -856 1651 1423 258 250 12 24 chr1 241834115 241834199 -40359465 - L1MDb LINE L1 -5937 182 100 22 0 0 0 chr1 241834296 241834318 -40359346 + AT_rich Low_complexity Low_complexity 1 22 0 1856 135 0 69 chr1 241834904 241835223 -40358441 - AluSx SINE Alu -15 297 1 2207 119 0 0 chr1 241835917 241836211 -40357453 + AluSx SINE Alu 1 294 -18 438 253 23 40 chr1 241836237 241836411 -40357253 + MER117 DNA MER1_type 6 176 -21 25 31 0 0 chr1 241836473 241836505 -40357159 + AT_rich Low_complexity Low_complexity 1 32 0 12890 138 31 53 chr1 241836642 241836866 -40356798 - Tigger1 DNA MER2_type 0 2418 2191 2064 117 3 0 chr1 241836866 241837156 -40356508 + AluSg SINE Alu 1 291 -19 12890 138 31 53 chr1 241837156 241839402 -40354262 - Tigger1 DNA MER2_type -227 2191 1 240 354 49 0 chr1 241839645 241839727 -40353937 + L2 LINE L2 2611 2696 -618 2540 246 40 52 chr1 241839739 241840407 -40353257 - L1MEc LINE L1 -3484 2898 2223 1707 191 12 20 chr1 241840407 241840752 -40352912 - MER2 DNA MER2_type -1 343 2 2540 246 40 52 chr1 241840752 241841347 -40352317 - L1MEc LINE L1 -4159 2223 1532 1202 221 75 80 chr1 241841347 241841812 -40351852 - MLT1D LTR MaLR 0 505 43 525 139 38 0 chr1 241841846 241841925 -40351739 - MLT1D LTR MaLR -423 82 1 1372 289 74 67 chr1 241841993 241842099 -40351565 - L1MEc LINE L1 -4790 1592 1488 2338 115 0 0 chr1 241842099 241842412 -40351252 - AluSq SINE Alu 0 313 1 1372 289 74 67 chr1 241842412 241843692 -40349972 - L1MEc LINE L1 -4894 1488 233 373 219 0 10 chr1 241843751 241843847 -40349817 + L1 LINE L1 3179 3273 -2873 9901 199 46 62 chr1 241843883 241845396 -40348268 + L1PB4 LINE L1 2425 3961 -2195 2039 136 0 0 chr1 241845396 241845691 -40347973 - AluSx SINE Alu -17 295 1 9901 199 46 62 chr1 241845691 241846360 -40347304 + L1PB4 LINE L1 3961 4639 -1517 2189 90 0 0 chr1 241846360 241846638 -40347026 + AluSx SINE Alu 21 298 -14 9901 199 46 62 chr1 241846638 241848266 -40345398 + L1PB4 LINE L1 4639 6151 -5 373 305 109 6 chr1 241848667 241848841 -40344823 + MIR SINE MIR 29 220 -42 21 36 0 0 chr1 241851540 241851568 -40342096 + AT_rich Low_complexity Low_complexity 1 28 0 2411 57 7 7 chr1 241851857 241852158 -40341506 + AluY SINE Alu 1 301 -10 234 0 0 0 chr1 241852187 241852213 -40341451 + (A)n Simple_repeat Simple_repeat 1 26 0 184 359 45 45 chr1 241852219 241852375 -40341289 - MIR SINE MIR -86 176 21 2063 95 0 0 chr1 241852574 241852836 -40340828 + AluSq SINE Alu 37 298 -15 1613 167 20 20 chr1 241853629 241853923 -40339741 + AluJo SINE Alu 1 294 -18 268 246 15 31 chr1 241854683 241854748 -40338916 - MIR SINE MIR -161 101 38 562 240 99 0 chr1 241855554 241855725 -40337939 - MER112 DNA MER1_type -5 255 68 796 206 12 6 chr1 241856141 241856306 -40337358 + MER82 DNA MER2_type 339 504 -149 1246 299 76 40 chr1 241856593 241856760 -40336904 - L1ME3 LINE L1 -229 5933 5773 2117 83 10 54 chr1 241856760 241857074 -40336590 - AluSp SINE Alu -13 300 1 1246 299 76 40 chr1 241857074 241857711 -40335953 - L1ME3 LINE L1 -389 5773 5160 2449 71 3 0 chr1 241857711 241858019 -40335645 + AluY SINE Alu 1 309 -2 1246 299 76 40 chr1 241858019 241858623 -40335041 - L1ME3 LINE L1 -1002 5160 4479 487 315 104 14 chr1 241859717 241859939 -40333725 + MIR SINE MIR 20 261 -1 551 273 21 0 chr1 241860068 241860211 -40333453 - MIR SINE MIR -26 236 91 315 0 0 0 chr1 241860595 241860630 -40333034 + (A)n Simple_repeat Simple_repeat 1 35 0 2084 108 3 3 chr1 241862254 241862550 -40331114 - AluSg SINE Alu -14 296 1 244 230 92 112 chr1 241862790 241862942 -40330722 - L2 LINE L2 -1 3312 3164 2207 136 13 16 chr1 241863099 241863475 -40330189 - THE1C LTR MaLR 0 375 1 1976 113 44 0 chr1 241863498 241863773 -40329891 + AluSx SINE Alu 1 287 -25 318 128 0 3 chr1 241864332 241864427 -40329237 + MER105 DNA DNA 27 151 -53 400 250 191 0 chr1 241864443 241864595 -40329069 + L2 LINE L2 3106 3286 -27 650 339 44 59 chr1 241864595 241865191 -40328473 + L2 LINE L2 1093 1679 -1635 3899 33 0 0 chr1 241865313 241865768 -40327896 + L1PA5 LINE L1 5691 6145 -9 441 66 0 0 chr1 241865768 241865829 -40327835 + (TA)n Simple_repeat Simple_repeat 1 61 0 292 331 164 35 chr1 241866043 241866755 -40326909 - L2 LINE L2 -665 2649 1846 280 268 113 0 chr1 241868761 241868858 -40324806 - MIR SINE MIR -107 155 48 219 230 162 54 chr1 241869404 241869478 -40324186 + L2 LINE L2 3232 3313 0 189 213 0 0 chr1 241869766 241869813 -40323851 + (TA)n Simple_repeat Simple_repeat 1 47 0 4314 125 11 19 chr1 241870700 241871430 -40322234 + Tigger1 DNA MER2_type 1 724 -1694 3184 110 8 2 chr1 241871444 241871926 -40321738 - LOR1a LTR ERV1 -12 485 1 9532 120 50 25 chr1 241871926 241872269 -40321395 + Tigger1 DNA MER2_type 716 1049 -1369 2199 119 0 0 chr1 241872269 241872572 -40321092 + AluSx SINE Alu 1 303 -9 9532 120 50 25 chr1 241872572 241873883 -40319781 + Tigger1 DNA MER2_type 1049 2411 -7 378 0 0 0 chr1 241873887 241873929 -40319735 + (TG)n Simple_repeat Simple_repeat 2 43 0 436 198 99 0 chr1 241873938 241874029 -40319635 - MLT2D LTR ERVL -64 400 301 5099 128 24 14 chr1 241874029 241874919 -40318745 - L1PA16 LINE L1 0 6166 5268 987 181 56 71 chr1 241874919 241875077 -40318587 - MLT2D LTR ERVL -152 262 108 2199 95 16 44 chr1 241875077 241875394 -40318270 + AluSq SINE Alu 1 308 -5 987 181 56 71 chr1 241875394 241875501 -40318163 - MLT2D LTR ERVL -306 108 1 1910 161 0 26 chr1 241875582 241875887 -40317777 - AluSx SINE Alu -15 297 1 1912 285 58 41 chr1 241876908 241877847 -40315817 + L1M4b LINE L1 62 1244 -5615 200 222 32 16 chr1 241878388 241878424 -40315240 + (CA)n Simple_repeat Simple_repeat 1 40 -24 2105 123 0 7 chr1 241878424 241878724 -40314940 + AluSx SINE Alu 1 298 -14 200 222 32 16 chr1 241878724 241878750 -40314914 + (CA)n Simple_repeat Simple_repeat 40 64 0 25 0 0 0 chr1 241880383 241880408 -40313256 + AT_rich Low_complexity Low_complexity 1 25 0 1732 151 0 0 chr1 241880940 241881179 -40312485 + AluSq SINE Alu 6 244 -69 2305 87 3 0 chr1 241882920 241883220 -40310444 + AluSp SINE Alu 1 301 -12 319 255 35 85 chr1 241884026 241884167 -40309497 + MIR SINE MIR 17 150 -112 2238 94 0 3 chr1 241884724 241885022 -40308642 - AluSx SINE Alu -15 297 1 181 282 111 34 chr1 241885135 241885252 -40308412 + MIR SINE MIR 131 256 -6 22 0 0 0 chr1 241886274 241886296 -40307368 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 241886426 241886448 -40307216 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1941 157 3 13 chr1 241886712 241887025 -40306639 - AluSx SINE Alu 0 312 3 22 35 0 0 chr1 241887501 241887530 -40306134 + AT_rich Low_complexity Low_complexity 1 29 0 491 275 87 9 chr1 241888383 241888601 -40305063 - HAL1 LINE L1 0 2507 2273 464 234 74 86 chr1 241888739 241888874 -40304790 - HAL1 LINE L1 -881 1626 1491 2244 108 0 0 chr1 241888874 241889169 -40304495 + AluSg SINE Alu 1 295 -15 464 234 74 86 chr1 241889169 241889358 -40304306 - HAL1 LINE L1 -1016 1491 1306 255 361 96 52 chr1 241889438 241890033 -40303631 - L2 LINE L2 -975 2339 1719 2488 65 7 7 chr1 241890423 241890733 -40302931 + AluY SINE Alu 1 310 -1 211 249 48 104 chr1 241891885 241892014 -40301650 - MIR SINE MIR -63 145 43 3389 53 12 0 chr1 241892695 241893127 -40300537 + L1PA7 LINE L1 5718 6154 0 2134 100 3 39 chr1 241893846 241894155 -40299509 - AluSx SINE Alu -14 298 1 692 258 84 57 chr1 241894197 241894721 -40298943 - L1MEd LINE L1 -2828 3301 2783 414 192 0 0 chr1 241894823 241894901 -40298763 + HsTC2 DNA Tc2 24 101 -1797 249 279 35 12 chr1 241894917 241895003 -40298661 - L1MEd LINE L1 -5488 631 544 180 0 0 0 chr1 241895015 241895035 -40298629 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr1 241895307 241895328 -40298336 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1 241895358 241895383 -40298281 + AT_rich Low_complexity Low_complexity 1 25 0 589 279 135 39 chr1 241895414 241895785 -40297879 - L1M4 LINE L1 -3595 2551 2140 2404 72 10 0 chr1 241895785 241896078 -40297586 - AluSg SINE Alu -14 296 1 589 279 135 39 chr1 241896078 241896090 -40297574 - L1M4 LINE L1 -4006 2140 2131 750 316 128 23 chr1 241896110 241896408 -40297256 - L1M4 LINE L1 -3263 2883 2618 2436 86 0 3 chr1 241896408 241896722 -40296942 + AluSq SINE Alu 1 313 0 750 316 128 23 chr1 241896722 241896995 -40296669 - L1M4 LINE L1 -3528 2618 2252 1077 293 31 5 chr1 241897077 241897463 -40296201 - HERV16 LTR ERVL -2927 2069 1674 460 334 43 7 chr1 241897505 241897932 -40295732 - HERV16 LTR ERVL -3440 1556 1097 980 301 128 5 chr1 241898437 241898829 -40294835 - LTR16B LTR ERVL -2 462 23 582 181 55 60 chr1 241899023 241899205 -40294459 - L1M4 LINE L1 -1133 5013 4833 2472 213 39 19 chr1 241899637 241900337 -40293327 - L1M4 LINE L1 -1293 4853 4140 564 296 111 32 chr1 241902494 241902789 -40290875 - L2 LINE L2 -2 3311 2984 279 0 0 0 chr1 241902789 241902820 -40290844 + (GA)n Simple_repeat Simple_repeat 1 31 0 564 296 111 32 chr1 241902820 241902868 -40290796 - L2 LINE L2 -329 2984 2941 2407 212 57 92 chr1 241904097 241904315 -40289349 - L1MC5 LINE L1 -44 7917 7693 2141 120 0 13 chr1 241904315 241904624 -40289040 - AluSx SINE Alu -7 305 1 2407 212 57 92 chr1 241904624 241904756 -40288908 - L1MC5 LINE L1 -268 7693 7558 189 0 0 0 chr1 241904756 241904777 -40288887 + (TA)n Simple_repeat Simple_repeat 2 22 0 2486 65 3 0 chr1 241904779 241905089 -40288575 - AluY SINE Alu 0 311 1 2407 212 57 92 chr1 241905089 241905818 -40287846 - L1MC5 LINE L1 -404 7557 6881 1638 198 17 7 chr1 241905818 241906111 -40287553 - AluJo SINE Alu -16 296 1 2407 212 57 92 chr1 241906111 241906259 -40287405 - L1MC5 LINE L1 -1080 6881 6729 985 152 35 0 chr1 241906260 241906457 -40287207 - L1MA8 LINE L1 -69 6222 6019 241 266 0 25 chr1 241906969 241907048 -40286616 + CT-rich Low_complexity Low_complexity 3 79 0 234 160 0 20 chr1 241907050 241907100 -40286564 - L1ME3 LINE L1 -4 6158 6110 1325 239 44 73 chr1 241907163 241907459 -40286205 - L1ME3 LINE L1 -166 5998 5726 2361 87 0 3 chr1 241907459 241907770 -40285894 - AluY SINE Alu -1 310 1 1325 239 44 73 chr1 241907770 241908047 -40285617 - L1ME3 LINE L1 -438 5726 5442 1240 233 128 42 chr1 241908046 241908622 -40285042 - L1ME3 LINE L1 -958 5188 4563 * 1824 250 82 7 chr1 241908751 241909594 -40284070 - L1ME3 LINE L1 -2957 3189 2284 2264 70 3 36 chr1 241910840 241911141 -40282523 - AluY SINE Alu 0 311 21 246 307 175 9 chr1 241911497 241911611 -40282053 - MIR SINE MIR -71 191 59 208 136 51 34 chr1 241911790 241911849 -40281815 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 289 350 77 21 chr1 241911926 241912069 -40281595 - MIR SINE MIR -109 153 3 1263 119 0 0 chr1 241912813 241912981 -40280683 + AluSg/x SINE Alu 129 296 -16 221 250 0 0 chr1 241913059 241913111 -40280553 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 2403 62 0 29 chr1 241913583 241913892 -40279772 - AluY SINE Alu -11 300 1 2157 127 7 0 chr1 241915281 241915589 -40278075 + AluSx SINE Alu 1 310 -2 509 242 89 45 chr1 241917110 241917267 -40276397 - MER45A DNA AcHobo -2 176 13 2352 91 0 0 chr1 241917285 241917583 -40276081 - AluSc SINE Alu -11 298 1 192 40 0 0 chr1 241918228 241918253 -40275411 + (GA)n Simple_repeat Simple_repeat 2 26 0 393 357 41 12 chr1 241919127 241919298 -40274366 + MIR SINE MIR 49 224 -38 290 130 43 0 chr1 241919732 241919778 -40273886 + AluSg SINE Alu 1 48 -252 2104 88 0 0 chr1 241919792 241920054 -40273610 + AluSg SINE Alu 30 291 -19 560 324 40 66 chr1 241921535 241922234 -40271430 - L2 LINE L2 -85 3228 2504 994 179 22 12 chr1 241923662 241923893 -40269771 + L1MB7 LINE L1 5323 5555 -619 422 55 18 0 chr1 241923893 241923948 -40269716 + MADE1 DNA Mariner 25 80 0 539 233 36 72 chr1 241923960 241924183 -40269481 + L1MB7 LINE L1 5960 6174 -10 1817 159 0 17 chr1 241924824 241925119 -40268545 + AluJb SINE Alu 1 290 -22 1692 176 3 3 chr1 241925151 241925447 -40268217 + AluJb SINE Alu 1 296 -16 1144 159 115 51 chr1 241926063 241926359 -40267305 - L1MA9 LINE L1 -1 6311 5997 201 178 0 22 chr1 241926643 241926688 -40266976 + (CATTT)n Simple_repeat Simple_repeat 3 46 0 2052 118 24 0 chr1 241927376 241927663 -40266001 + AluSg SINE Alu 1 294 -16 2007 102 0 0 chr1 241928238 241928503 -40265161 + AluY SINE Alu 39 303 -8 344 287 112 49 chr1 241929244 241929467 -40264197 + MIR SINE MIR 20 256 -6 256 330 10 0 chr1 241929616 241929713 -40263951 + MIR SINE MIR 56 153 -109 2867 13 0 0 chr1 241929998 241930310 -40263354 + AluYb8 SINE Alu 1 312 -6 1945 164 0 0 chr1 241930550 241930848 -40262816 + AluSx SINE Alu 1 298 -14 627 183 21 63 chr1 241931562 241931704 -40261960 + AluJo SINE Alu 47 182 -130 843 176 0 0 chr1 241931850 241931975 -40261689 + AluJo SINE Alu 166 290 -22 2017 117 11 0 chr1 241931983 241932294 -40261370 + AluSx SINE Alu 1 314 0 786 242 91 82 chr1 241932473 241932741 -40260923 + MER46C DNA MER2_type 1 274 -64 2337 96 3 0 chr1 241932741 241933044 -40260620 - AluSp SINE Alu -8 305 2 786 242 91 82 chr1 241933044 241933106 -40260558 + MER46C DNA MER2_type 274 334 -4 289 309 57 57 chr1 241933122 241933332 -40260332 - L3 LINE CR1 -231 1346 1137 912 280 178 5 chr1 241933722 241934133 -40259531 - L2 LINE L2 -28 3285 2804 635 255 90 61 chr1 241934141 241934518 -40259146 - L2 LINE L2 -1296 2018 1631 2360 107 3 0 chr1 241935727 241936036 -40257628 + AluSg SINE Alu 1 310 0 1713 160 53 0 chr1 241936599 241936881 -40256783 + AluSx SINE Alu 1 297 -15 202 267 40 0 chr1 241936899 241937000 -40256664 + (TA)n Simple_repeat Simple_repeat 1 105 0 822 238 55 11 chr1 241937118 241937299 -40256365 + MER5A DNA MER1_type 1 189 0 543 299 21 58 chr1 241937448 241937689 -40255975 + MIR SINE MIR 6 237 -25 204 250 139 0 chr1 241937713 241937785 -40255879 - L2 LINE L2 -37 3276 3195 190 302 0 0 chr1 241937847 241937900 -40255764 - L3 LINE CR1 -23 1554 1502 284 287 157 17 chr1 241937974 241938089 -40255575 + MIR SINE MIR 20 150 -58 372 301 82 14 chr1 241938374 241938520 -40255144 - L3 LINE CR1 -1022 555 400 216 337 84 80 chr1 241938913 241939352 -40254312 - L2 LINE L2 0 3272 2832 1999 137 3 7 chr1 241940008 241940307 -40253357 + AluSx SINE Alu 1 298 -14 516 16 0 0 chr1 241941618 241941679 -40251985 + (TG)n Simple_repeat Simple_repeat 2 62 0 24 32 0 0 chr1 241942703 241942734 -40250930 + AT_rich Low_complexity Low_complexity 1 31 0 2273 87 24 0 chr1 241943565 241943853 -40249811 - AluSg SINE Alu -15 295 1 242 191 0 0 chr1 241944513 241944555 -40249109 + C-rich Low_complexity Low_complexity 1 42 0 237 211 0 0 chr1 241944655 241944707 -40248957 + (CA)n Simple_repeat Simple_repeat 1 52 0 247 233 0 0 chr1 241944710 241944770 -40248894 - L1MC4 LINE L1 -1339 6703 6644 254 321 37 0 chr1 241945660 241945741 -40247923 + MER5A DNA MER1_type 83 166 -23 21 0 0 0 chr1 241947247 241947268 -40246396 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1 241947294 241947322 -40246342 + AT_rich Low_complexity Low_complexity 1 28 0 2266 76 3 51 chr1 241947777 241948092 -40245572 - AluY SINE Alu -11 300 1 279 146 36 18 chr1 241948140 241948195 -40245469 - AluJo SINE Alu -20 282 227 1034 126 0 18 chr1 241948195 241948362 -40245302 - AluJo SINE Alu -148 164 1 2199 114 3 3 chr1 241949081 241949379 -40244285 + AluSc SINE Alu 1 298 -11 202 356 75 37 chr1 241952033 241952221 -40241443 + L2 LINE L2 2239 2433 -881 2128 116 14 0 chr1 241953602 241953894 -40239770 + AluSg SINE Alu 1 296 -14 371 269 67 75 chr1 241953910 241954332 -40239332 + L1MEd LINE L1 926 1350 -4779 2218 116 0 0 chr1 241954332 241954635 -40239029 + AluSx SINE Alu 1 303 -9 371 269 67 75 chr1 241954635 241954735 -40238929 + L1MEd LINE L1 1350 1432 -4697 2537 45 0 0 chr1 241954735 241955027 -40238637 + AluY SINE Alu 1 292 -19 371 269 67 75 chr1 241955027 241955127 -40238537 + L1MEd LINE L1 1432 1531 -4598 360 229 65 122 chr1 241955414 241955578 -40238086 - L2 LINE L2 -1 3312 3161 342 254 136 8 chr1 241955578 241955696 -40237968 + MER94 DNA DNA 2 134 0 360 229 65 122 chr1 241955696 241955745 -40237919 - L2 LINE L2 -152 3161 3111 249 33 0 0 chr1 241955756 241955786 -40237878 + (A)n Simple_repeat Simple_repeat 1 30 0 1483 183 28 17 chr1 241955787 241956076 -40237588 + AluJo SINE Alu 1 292 -20 2230 101 0 22 chr1 241957498 241957815 -40235849 + AluSg SINE Alu 1 310 0 414 298 113 25 chr1 241957821 241958183 -40235481 + L1M4 LINE L1 4060 4453 -1693 25 0 0 0 chr1 241958243 241958268 -40235396 + AT_rich Low_complexity Low_complexity 1 25 0 2504 80 0 0 chr1 241958545 241958857 -40234807 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 241959200 241959221 -40234443 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr1 241959962 241959986 -40233678 + (A)n Simple_repeat Simple_repeat 1 24 0 2278 98 10 0 chr1 241960738 241961034 -40232630 - AluSp SINE Alu -11 302 4 1254 96 15 30 chr1 241961043 241961240 -40232424 - L1MA5A LINE L1 -4 6293 6100 1625 150 41 4 chr1 241961328 241961594 -40232070 + AluJb SINE Alu 24 299 -13 467 136 0 25 chr1 241961639 241961720 -40231944 + AluJ/FRAM SINE Alu 227 305 -7 489 308 99 20 chr1 241962422 241962675 -40230989 + LTR16A LTR ERVL 152 424 -26 275 261 43 0 chr1 241962797 241962866 -40230798 + HERV16 LTR ERVL 147 218 -4778 2126 213 48 70 chr1 241962868 241963478 -40230186 + LTR9 LTR ERV1 1 596 -16 265 325 31 37 chr1 241963537 241963700 -40229964 + HERV16 LTR ERVL 261 422 -4574 881 319 59 39 chr1 241963949 241964494 -40229170 + HERV16 LTR ERVL 887 1442 -3554 1710 288 80 35 chr1 241964556 241965344 -40228320 + HERV16 LTR ERVL 1585 2407 -2589 395 287 13 47 chr1 241965577 241965727 -40227937 + HERV16 LTR ERVL 2694 2838 -2158 300 229 121 24 chr1 241965728 241965811 -40227853 + L1MDa LINE L1 13 103 -6437 617 249 97 16 chr1 241965930 241966115 -40227549 + L1MDa LINE L1 98 297 -6243 499 45 15 0 chr1 241966247 241966313 -40227351 + MER41B LTR ERV1 481 547 -88 27 49 0 0 chr1 241969577 241969618 -40224046 + GC_rich Low_complexity Low_complexity 1 41 0 1588 134 50 18 chr1 241970213 241970496 -40223168 - AluJo SINE Alu -15 297 6 659 203 29 138 chr1 241970781 241971057 -40222607 - MIR SINE MIR -2 260 15 2274 61 0 7 chr1 241971318 241971597 -40222067 + AluY SINE Alu 30 306 -5 621 276 124 18 chr1 241972161 241972378 -40221286 - MIR SINE MIR -2 260 21 226 333 0 0 chr1 241972501 241972570 -40221094 - L2 LINE L2 0 3313 3245 2249 95 23 3 chr1 241972598 241972904 -40220760 - AluSx SINE Alu 0 312 1 944 264 113 54 chr1 241972904 241973402 -40220262 + L2 LINE L2 2773 3299 -14 2241 85 0 36 chr1 241973402 241973708 -40219956 + AluSq SINE Alu 1 295 -18 944 264 113 54 chr1 241973708 241973719 -40219945 + L2 LINE L2 3299 3308 -5 198 286 39 26 chr1 241973825 241973902 -40219762 + MER5A DNA MER1_type 5 82 -107 21 57 0 0 chr1 241973913 241973948 -40219716 + AT_rich Low_complexity Low_complexity 1 35 0 518 72 0 0 chr1 241973948 241974017 -40219647 - L1MA3 LINE L1 0 6305 6237 265 260 62 31 chr1 241974017 241974113 -40219551 - MER5A DNA MER1_type -75 114 16 926 197 67 29 chr1 241976409 241976617 -40217047 + MER58A DNA MER1_type 9 224 0 2208 99 0 23 chr1 241976977 241977279 -40216385 - AluY SINE Alu -16 295 1 746 340 76 4 chr1 241977285 241977771 -40215893 - L1ME3A LINE L1 -240 5930 5410 1086 274 131 14 chr1 241979403 241979907 -40213757 + MLT1L LTR MaLR 6 568 -47 357 352 79 32 chr1 241979986 241980239 -40213425 + L2 LINE L2 2551 2815 -499 220 244 199 38 chr1 241980518 241980649 -40213015 + L2 LINE L2 3121 3272 0 939 253 65 42 chr1 241981014 241981322 -40212342 + Charlie2 DNA MER1_type 4 318 -2544 1104 187 87 141 chr1 241981333 241981599 -40212065 + Charlie2 DNA MER1_type 1859 2138 -724 2743 113 59 7 chr1 241981599 241982006 -40211658 + MSTA LTR MaLR 1 428 0 1104 187 87 141 chr1 241982006 241982748 -40210916 + Charlie2 DNA MER1_type 2138 2813 -49 462 149 0 0 chr1 241983921 241984008 -40209656 + (TCCC)n Simple_repeat Simple_repeat 2 88 0 2060 110 0 7 chr1 241984036 241984308 -40209356 - AluSq SINE Alu -43 270 1 565 226 0 16 chr1 241984810 241984934 -40208730 + L2 LINE L2 3191 3312 -1 202 108 81 0 chr1 241985090 241985127 -40208537 - L2 LINE L2 -3 3310 3271 361 264 108 31 chr1 241985428 241985557 -40208107 - MER5A DNA MER1_type -1 188 50 2488 75 3 0 chr1 241986036 241986341 -40207323 - AluSp SINE Alu -5 308 3 414 234 55 31 chr1 241986591 241986719 -40206945 + L3 LINE CR1 1240 1370 -207 2639 32 0 3 chr1 241986763 241987074 -40206590 + AluY SINE Alu 1 310 -1 1256 166 20 32 chr1 241987082 241987329 -40206335 + L1MB5 LINE L1 5931 6174 0 281 249 65 8 chr1 241987669 241987839 -40205825 - L1ME LINE L1 -299 5822 5628 985 192 126 96 chr1 241987889 241988143 -40205521 - MER2 DNA MER2_type -1 343 75 2167 93 0 30 chr1 241988143 241988445 -40205219 + AluSq SINE Alu 1 293 -20 985 192 126 96 chr1 241988445 241988523 -40205141 - MER2 DNA MER2_type -269 75 1 22 56 0 0 chr1 241989012 241989048 -40204616 + AT_rich Low_complexity Low_complexity 1 36 0 819 312 146 31 chr1 241989586 241989969 -40203695 - L2 LINE L2 -2 3311 2973 2343 91 0 7 chr1 241989969 241990277 -40203387 + AluSc SINE Alu 1 306 -3 819 312 146 31 chr1 241990277 241990638 -40203026 - L2 LINE L2 -340 2973 2655 2174 124 0 3 chr1 241990638 241990944 -40202720 + AluSq SINE Alu 1 305 -8 819 312 146 31 chr1 241990944 241991271 -40202393 - L2 LINE L2 -658 2655 2108 1394 154 0 131 chr1 241991291 241991665 -40201999 + AluJb SINE Alu 1 312 0 201 352 163 15 chr1 241992017 241992213 -40201451 - L2 LINE L2 -1259 2055 1831 2301 110 3 0 chr1 241992223 241992532 -40201132 + AluSp SINE Alu 1 310 -3 2335 88 3 3 chr1 241993184 241993490 -40200174 - AluSp SINE Alu -7 306 1 252 0 0 0 chr1 241993572 241993600 -40200064 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1965 124 58 0 chr1 241994506 241994797 -40198867 - AluSg SINE Alu -2 308 1 216 270 76 81 chr1 241995015 241995200 -40198464 - MIR3 SINE MIR -3 205 22 1382 185 34 51 chr1 241995466 241995758 -40197906 + AluJo SINE Alu 1 287 -25 2286 97 0 0 chr1 241997296 241997595 -40196069 + AluSq SINE Alu 1 299 -14 2287 110 0 3 chr1 241998032 241998340 -40195324 + AluSq SINE Alu 5 311 -2 479 286 157 16 chr1 241998410 241998595 -40195069 + MIR SINE MIR 52 262 0 2490 255 115 76 chr1 241999404 242000057 -40193607 + HAL1 LINE L1 574 1200 -1307 2000 130 13 3 chr1 242000057 242000358 -40193306 + AluSx SINE Alu 3 306 -6 2490 255 115 76 chr1 242000358 242001459 -40192205 + HAL1 LINE L1 1200 2396 -111 23 68 0 0 chr1 242001613 242001657 -40192007 + AT_rich Low_complexity Low_complexity 1 44 0 3378 202 132 44 chr1 242001834 242002505 -40191159 - Charlie1 DNA MER1_type 0 2761 1966 2170 135 0 0 chr1 242002505 242002808 -40190856 - AluSx SINE Alu -9 303 1 3378 202 132 44 chr1 242002808 242003168 -40190496 - Charlie1 DNA MER1_type -795 1966 1639 651 178 0 28 chr1 242003177 242003284 -40190380 + FLAM_A SINE Alu 12 115 -27 914 213 28 19 chr1 242003296 242003507 -40190157 - Charlie1 DNA MER1_type -1109 1652 1440 217 260 110 63 chr1 242003571 242003698 -40189966 + L2 LINE L2 3180 3312 -1 303 28 0 0 chr1 242004854 242004890 -40188774 + (CA)n Simple_repeat Simple_repeat 1 36 0 251 338 150 24 chr1 242004916 242005123 -40188541 - MIR SINE MIR -10 252 20 251 156 0 78 chr1 242005859 242005936 -40187728 + MER4B-int LTR ERV1 1138 1208 -5550 710 207 4 8 chr1 242005936 242006190 -40187474 + (TG)n Simple_repeat Simple_repeat 1 253 0 825 172 0 0 chr1 242006348 242006528 -40187136 + (TG)n Simple_repeat Simple_repeat 1 180 0 1850 167 7 0 chr1 242007214 242007507 -40186157 + AluJb SINE Alu 1 295 -17 2123 133 0 13 chr1 242007510 242007826 -40185838 + AluJb SINE Alu 1 312 0 923 267 57 24 chr1 242007961 242008257 -40185407 + MER69 DNA AcHobo 85 390 -836 330 293 19 0 chr1 242008265 242008371 -40185293 + MER69 DNA AcHobo 2419 2526 0 2050 126 10 7 chr1 242008857 242009159 -40184505 + AluSx SINE Alu 7 309 -3 1445 243 58 68 chr1 242009464 242009962 -40183702 + L1MEc LINE L1 4 496 -5900 4024 254 64 12 chr1 242009963 242010107 -40183557 + L1MEc LINE L1 682 817 -5579 228 100 0 0 chr1 242010107 242010147 -40183517 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 4024 254 64 12 chr1 242010147 242011113 -40182551 + L1MEc LINE L1 817 1927 -4469 2157 137 0 0 chr1 242011113 242011413 -40182251 + AluSx SINE Alu 1 300 -12 4024 254 64 12 chr1 242011413 242011954 -40181710 + L1MEc LINE L1 1927 2438 -3958 697 183 22 39 chr1 242011995 242012175 -40181489 + L1M4 LINE L1 4186 4362 -1784 959 195 0 26 chr1 242012175 242012370 -40181294 + AluJo SINE Alu 121 310 -2 2900 216 29 23 chr1 242012374 242013144 -40180520 + L1M4 LINE L1 4384 5157 -989 2226 102 7 0 chr1 242013472 242013765 -40179899 + AluSc SINE Alu 5 299 -10 211 264 0 38 chr1 242014585 242014638 -40179026 + MIR3 SINE MIR 124 174 -34 362 78 20 0 chr1 242014686 242014747 -40178917 + Alu SINE Alu 3 51 -250 488 56 14 0 chr1 242015914 242015986 -40177678 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2126 99 53 0 chr1 242016042 242016325 -40177339 + AluSg SINE Alu 1 298 -12 218 32 32 0 chr1 242016740 242016771 -40176893 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1052 90 0 0 chr1 242016773 242016907 -40176757 - AluSg/x SINE Alu -30 282 149 365 278 56 19 chr1 242017460 242017568 -40176096 + L2 LINE L2 3155 3266 -6 2253 118 0 0 chr1 242017602 242017899 -40175765 + AluSx SINE Alu 3 299 -13 283 304 39 0 chr1 242017920 242018022 -40175642 - MARNA DNA Mariner -356 230 125 665 323 92 7 chr1 242018116 242018419 -40175245 + MLT1I LTR MaLR 80 408 -1 2224 84 0 3 chr1 242019714 242020026 -40173638 - AluSq SINE Alu 0 311 1 2198 106 0 0 chr1 242020032 242020367 -40173297 - AluSq SINE Alu 0 335 1 214 182 0 0 chr1 242020379 242020423 -40173241 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1689 244 56 18 chr1 242020938 242021388 -40172276 - MLT1C LTR MaLR 0 467 1 2390 75 0 7 chr1 242022083 242022377 -40171287 - AluSc SINE Alu -17 292 1 411 218 0 0 chr1 242022512 242022590 -40171074 - MER2 DNA MER2_type 0 345 268 293 100 0 0 chr1 242022638 242022678 -40170986 + AluJ SINE Alu 87 126 -176 2285 119 0 0 chr1 242022688 242023000 -40170664 + AluSx SINE Alu 1 312 0 1015 170 0 37 chr1 242023015 242023203 -40170461 + AluJ SINE Alu 120 300 -12 1133 182 10 0 chr1 242023204 242023407 -40170257 - MER2 DNA MER2_type -138 207 3 244 222 25 62 chr1 242023674 242023755 -40169909 - MER96 DNA MER1_type? 0 175 98 2331 107 0 0 chr1 242023923 242024232 -40169432 + AluSx SINE Alu 1 309 -3 350 245 161 48 chr1 242025601 242025776 -40167888 - L1ME4a LINE L1 -47 6074 5856 1845 174 0 29 chr1 242025776 242026092 -40167572 - AluJb SINE Alu 0 312 6 350 245 161 48 chr1 242026092 242026189 -40167475 - L1ME4a LINE L1 -265 5856 5771 1119 279 34 64 chr1 242026360 242026862 -40166802 + LTR16C LTR ERVL 5 491 0 205 245 57 0 chr1 242027089 242027142 -40166522 - MIR SINE MIR -114 94 39 1448 188 3 41 chr1 242027302 242027595 -40166069 + AluJb SINE Alu 1 282 -30 2394 93 3 0 chr1 242027626 242027937 -40165727 + AluSp SINE Alu 1 312 -1 201 284 134 35 chr1 242028277 242028531 -40165133 - L2 LINE L2 -179 3093 2815 2122 135 6 3 chr1 242028889 242029201 -40164463 - AluSq SINE Alu 0 313 1 2289 95 13 0 chr1 242029246 242029552 -40164112 - AluSg SINE Alu 0 310 1 341 362 53 20 chr1 242029578 242029824 -40163840 + L2 LINE L2 3014 3267 -5 2141 85 0 41 chr1 242031324 242031652 -40162012 + AluSq SINE Alu 1 316 0 220 261 0 0 chr1 242031663 242031709 -40161955 + L2 LINE L2 3006 3051 -221 356 298 38 60 chr1 242031822 242032087 -40161577 + MIR SINE MIR 2 260 -2 274 299 65 9 chr1 242032317 242032424 -40161240 - MER94 DNA DNA -21 113 1 1909 156 0 16 chr1 242032425 242032732 -40160932 - AluJo SINE Alu -10 302 1 252 130 0 0 chr1 242033167 242033213 -40160451 + (TA)n Simple_repeat Simple_repeat 2 47 0 1327 189 175 3 chr1 242033214 242033511 -40160153 - MER7A DNA MER2_type 0 346 1 1330 102 0 2 chr1 242033578 242033813 -40159851 + AluSc SINE Alu 2 288 -21 228 313 81 10 chr1 242034216 242034315 -40159349 + MIR SINE MIR 129 234 -28 183 287 139 9 chr1 242034405 242034513 -40159151 + MIR SINE MIR 132 253 -9 509 129 14 0 chr1 242034888 242034958 -40158706 + AluS SINE Alu 2 72 -240 227 54 27 0 chr1 242035519 242035556 -40158108 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2174 110 0 13 chr1 242035592 242035891 -40157773 - AluSx SINE Alu -17 295 1 1965 142 7 0 chr1 242035968 242036296 -40157368 + AluSq SINE Alu 1 313 0 192 326 45 34 chr1 242036298 242036387 -40157277 + MER5A DNA MER1_type 67 156 -33 292 241 37 37 chr1 242036845 242036953 -40156711 + MIR SINE MIR 85 192 -70 872 153 0 23 chr1 242037574 242037705 -40155959 + FLAM_C SINE Alu 1 128 -5 1621 191 7 0 chr1 242038060 242038338 -40155326 - AluJo SINE Alu -32 280 1 513 251 173 52 chr1 242038404 242038434 -40155230 + MIR SINE MIR 4 29 -233 2072 131 3 3 chr1 242038434 242038732 -40154932 + AluSx SINE Alu 1 298 -14 513 251 173 52 chr1 242038732 242038932 -40154732 + MIR SINE MIR 29 262 0 864 188 74 0 chr1 242039418 242039594 -40154070 - MER5A DNA MER1_type 0 189 1 2083 114 3 7 chr1 242039621 242039918 -40153746 + AluSc SINE Alu 1 296 -13 2177 122 0 3 chr1 242039979 242040282 -40153382 + AluSq SINE Alu 1 302 -11 2421 91 0 0 chr1 242042216 242042524 -40151140 - AluY SINE Alu -3 308 1 231 282 48 80 chr1 242042692 242042880 -40150784 + L1ME4a LINE L1 5935 6116 -5 439 285 76 13 chr1 242043179 242043337 -40150327 + MIR SINE MIR 81 248 -14 21 0 0 0 chr1 242043574 242043595 -40150069 + AT_rich Low_complexity Low_complexity 1 21 0 224 300 201 50 chr1 242043996 242044299 -40149365 + L2 LINE L2 2327 2675 -639 2138 212 94 33 chr1 242044893 242045402 -40148262 - MLT1F LTR MaLR -2 540 1 1488 135 155 0 chr1 242045568 242045813 -40147851 - AluSx SINE Alu -19 293 11 2363 101 0 0 chr1 242046345 242046653 -40147011 - AluSg1 SINE Alu -1 308 1 24 0 0 0 chr1 242047399 242047423 -40146241 + AT_rich Low_complexity Low_complexity 1 24 0 582 107 6 137 chr1 242048054 242048222 -40145442 - L1MCa LINE L1 -5136 1290 1145 279 133 0 0 chr1 242048999 242049044 -40144620 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 2076 138 3 0 chr1 242049069 242049366 -40144298 + AluSx SINE Alu 1 298 -14 202 391 43 7 chr1 242050170 242050308 -40143356 + MIR3 SINE MIR 3 145 -63 2352 109 0 0 chr1 242050712 242051023 -40142641 - AluSq SINE Alu -2 311 1 373 283 40 58 chr1 242051743 242051865 -40141799 + MIR SINE MIR 80 200 -62 2314 85 0 19 chr1 242051865 242052172 -40141492 + AluSx SINE Alu 1 301 -11 373 283 40 58 chr1 242052172 242052222 -40141442 + MIR SINE MIR 200 249 -13 21 0 0 0 chr1 242052607 242052628 -40141036 + AT_rich Low_complexity Low_complexity 1 21 0 1978 87 11 0 chr1 242052797 242053061 -40140603 + AluSc SINE Alu 21 287 -22 2189 40 4 40 chr1 242053062 242053337 -40140327 + AluY SINE Alu 31 295 -16 217 151 75 0 chr1 242053709 242053762 -40139902 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 203 286 57 0 chr1 242053766 242053836 -40139828 - L3 LINE CR1 -125 1452 1379 421 240 78 0 chr1 242053866 242053995 -40139669 - Charlie4a DNA MER1_type -2 506 368 248 170 85 11 chr1 242053995 242054089 -40139575 + (TA)n Simple_repeat Simple_repeat 1 101 0 2224 198 7 28 chr1 242054094 242054529 -40139135 - MSTB LTR MaLR 0 426 1 267 31 0 0 chr1 242054546 242054578 -40139086 + (TG)n Simple_repeat Simple_repeat 2 33 0 985 241 46 40 chr1 242054581 242054904 -40138760 - Charlie4a DNA MER1_type -163 345 21 761 185 0 8 chr1 242054916 242055046 -40138618 + AluJo SINE Alu 2 130 -182 3496 43 21 1 chr1 242055046 242055547 -40138117 + LTR10C LTR ERV1 14 591 0 806 204 0 51 chr1 242055570 242055750 -40137914 + AluJo SINE Alu 137 308 0 22 0 0 0 chr1 242056056 242056078 -40137586 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 242056140 242056161 -40137503 + AT_rich Low_complexity Low_complexity 1 21 0 223 321 92 15 chr1 242056738 242056869 -40136795 + L2 LINE L2 3172 3312 -1 2458 76 3 0 chr1 242056915 242057218 -40136446 - AluSq SINE Alu -9 304 1 306 234 106 0 chr1 242057266 242057360 -40136304 + MIR SINE MIR 111 214 -48 184 281 178 14 chr1 242057412 242057558 -40136106 - MIR3 SINE MIR -4 204 35 240 356 22 0 chr1 242058398 242058488 -40135176 + MIR SINE MIR 163 254 -8 210 118 0 0 chr1 242062155 242062189 -40131475 + (TCTCCC)n Simple_repeat Simple_repeat 6 39 0 306 0 0 0 chr1 242062821 242062855 -40130809 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 255 109 0 chr1 242064002 242064094 -40129570 - MIR SINE MIR -66 142 59 358 369 110 0 chr1 242064752 242064988 -40128676 + L3 LINE CR1 1036 1297 -280 180 330 106 64 chr1 242065200 242065436 -40128228 + L3 LINE CR1 1331 1576 -1 2114 134 3 0 chr1 242065724 242066015 -40127649 - AluSx SINE Alu -15 297 6 2474 56 0 10 chr1 242066468 242066773 -40126891 + AluY SINE Alu 5 306 -5 22 0 0 0 chr1 242066982 242067004 -40126660 + AT_rich Low_complexity Low_complexity 1 22 0 1898 153 3 28 chr1 242067007 242067327 -40126337 + AluJb SINE Alu 1 312 0 1060 132 19 6 chr1 242068277 242068436 -40125228 - AluSp SINE Alu -18 295 135 1091 162 5 35 chr1 242068470 242068667 -40124997 - MER20 DNA MER1_type 0 219 29 730 305 16 70 chr1 242068668 242068824 -40124840 - L1MC4a LINE L1 -1932 5876 5713 216 0 0 0 chr1 242068824 242068848 -40124816 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 730 305 16 70 chr1 242068848 242069061 -40124603 - L1MC4a LINE L1 -2095 5713 5527 1552 189 14 17 chr1 242069199 242069490 -40124174 - AluJo SINE Alu -22 290 1 204 276 52 60 chr1 242070086 242070202 -40123462 + MIR SINE MIR 17 131 -77 2185 187 24 99 chr1 242070604 242070699 -40122965 - MLT1D LTR MaLR 0 505 404 1805 126 0 8 chr1 242070699 242070954 -40122710 - AluSx SINE Alu -57 255 3 2185 187 24 99 chr1 242070954 242071403 -40122261 - MLT1D LTR MaLR -101 404 2 1352 165 7 68 chr1 242072795 242073074 -40120590 + AluJo SINE Alu 29 290 -22 1096 67 6 28 chr1 242073104 242073284 -40120380 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 443 272 43 72 chr1 242073321 242073359 -40120305 - MER57B LTR ERV1 -164 270 232 2271 109 0 3 chr1 242073359 242073663 -40120001 + AluSx SINE Alu 1 303 -9 443 272 43 72 chr1 242073663 242073859 -40119805 - MER57B LTR ERV1 -202 232 43 1102 187 91 14 chr1 242073901 242074120 -40119544 - MER46A DNA MER2_type 0 236 1 370 275 132 5 chr1 242074155 242074344 -40119320 - L1ME4a LINE L1 -199 5922 5710 1394 207 13 46 chr1 242074403 242074731 -40118933 + AluJo SINE Alu 1 318 0 2183 133 0 0 chr1 242074872 242075181 -40118483 + AluSx SINE Alu 1 309 -3 198 0 0 0 chr1 242075238 242075260 -40118404 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 371 312 41 54 chr1 242075473 242075842 -40117822 + Tigger8 DNA MER2_type 210 573 -93 216 352 132 25 chr1 242075859 242076018 -40117646 + MER5A DNA MER1_type 14 189 0 1813 157 14 0 chr1 242076637 242076924 -40116740 - AluJo SINE Alu -21 291 1 368 264 116 43 chr1 242076925 242077183 -40116481 - L1ME4a LINE L1 -861 5285 5009 22 35 0 0 chr1 242077185 242077214 -40116450 + AT_rich Low_complexity Low_complexity 1 29 0 2246 88 7 7 chr1 242077462 242077757 -40115907 + AluSq SINE Alu 1 295 -18 773 191 8 0 chr1 242077766 242077897 -40115767 + FLAM_C SINE Alu 1 132 -11 1674 138 24 63 chr1 242077906 242078159 -40115505 + MER33 DNA MER1_type 1 239 -2346 2157 129 3 0 chr1 242078159 242078461 -40115203 - AluSx SINE Alu -9 303 1 1674 138 24 63 chr1 242078461 242078541 -40115123 + MER33 DNA MER1_type 239 321 -3 224 324 66 44 chr1 242078812 242079084 -40114580 + L2 LINE L2 2806 3083 -189 242 281 50 44 chr1 242079983 242080143 -40113521 - L2 LINE L2 -1381 1933 1773 757 294 41 5 chr1 242080165 242080202 -40113462 + MIR SINE MIR 1 35 -227 2095 114 0 17 chr1 242080202 242080526 -40113138 - AluSq SINE Alu 0 313 1 757 294 41 5 chr1 242080526 242080709 -40112955 + MIR SINE MIR 35 229 -33 2226 150 25 6 chr1 242080847 242081208 -40112456 - MLT1B LTR MaLR 0 390 23 2219 122 0 0 chr1 242081244 242081548 -40112116 - AluSx SINE Alu -8 304 1 2171 93 14 0 chr1 242081707 242082011 -40111653 - AluSx SINE Alu 0 308 1 1146 152 43 0 chr1 242082675 242082859 -40110805 + THE1C LTR MaLR 1 192 -183 1109 149 53 43 chr1 242083414 242083622 -40110042 + THE1C LTR MaLR 155 364 0 611 285 34 33 chr1 242083647 242083889 -40109775 + MIR SINE MIR 20 261 -1 744 158 0 0 chr1 242084027 242084147 -40109517 + L1PA16 LINE L1 6027 6146 -20 1557 170 14 41 chr1 242084182 242084476 -40109188 - AluJo SINE Alu -24 288 3 1936 127 17 10 chr1 242084484 242084783 -40108881 - AluSx SINE Alu -11 301 1 545 217 11 149 chr1 242085301 242085455 -40108209 - MER112 DNA MER1_type -2 258 159 2130 121 7 0 chr1 242085455 242085745 -40107919 + AluSx SINE Alu 1 292 -20 545 217 11 149 chr1 242085745 242085871 -40107793 - MER112 DNA MER1_type -101 159 17 2041 202 9 56 chr1 242086261 242086795 -40106869 - MER74A LTR ERVL -28 530 22 502 133 0 0 chr1 242086795 242086870 -40106794 + FLAM SINE Alu 57 131 -12 2195 111 7 0 chr1 242086977 242087274 -40106390 + AluSp SINE Alu 1 299 -14 23 0 0 29 chr1 242087391 242087410 -40106254 + AT_rich Low_complexity Low_complexity 1 20 -13 2078 131 7 0 chr1 242087410 242087692 -40105972 + AluSx SINE Alu 1 284 -28 23 0 0 29 chr1 242087692 242087706 -40105958 + AT_rich Low_complexity Low_complexity 20 33 0 647 187 39 60 chr1 242087889 242088071 -40105593 + MER53 DNA DNA 4 181 -8 1481 265 59 62 chr1 242088084 242088680 -40104984 + MLT1E2 LTR MaLR 1 594 -32 1557 191 23 7 chr1 242088681 242088980 -40104684 - AluJo SINE Alu -8 304 1 733 188 0 23 chr1 242088991 242089124 -40104540 - FLAM_A SINE Alu -2 131 2 23 0 0 0 chr1 242089203 242089226 -40104438 + AT_rich Low_complexity Low_complexity 1 23 0 1787 140 56 11 chr1 242089274 242089559 -40104105 + AluSx SINE Alu 1 298 -14 2062 125 0 42 chr1 242090011 242090324 -40103340 - AluSx SINE Alu -12 300 1 2466 162 15 2 chr1 242090430 242090826 -40102838 - MER57A LTR ERV1 -2 401 1 2143 94 31 3 chr1 242090843 242091130 -40102534 + AluSg SINE Alu 1 295 -15 1365 164 58 189 chr1 242091133 242091706 -40101958 - LTR8A LTR ERV1 -229 498 1 422 318 32 8 chr1 242091939 242092065 -40101599 + MIR SINE MIR 12 140 -122 1940 149 0 48 chr1 242092093 242092239 -40101425 + AluSx SINE Alu 1 126 -186 2467 64 7 0 chr1 242092239 242092536 -40101128 + AluY SINE Alu 1 299 -12 1940 149 0 48 chr1 242092536 242092698 -40100966 + AluSx SINE Alu 126 294 -18 392 328 30 23 chr1 242092826 242092957 -40100707 + L2 LINE L2 3141 3272 0 225 0 0 0 chr1 242093011 242093036 -40100628 + (T)n Simple_repeat Simple_repeat 1 25 0 1983 128 0 3 chr1 242093721 242094009 -40099655 - AluSx SINE Alu -14 298 12 203 296 26 72 chr1 242094398 242094550 -40099114 - L2 LINE L2 -208 3064 2920 195 42 0 0 chr1 242094735 242094759 -40098905 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 53 0 0 chr1 242094970 242095008 -40098656 + AT_rich Low_complexity Low_complexity 1 38 0 709 174 9 0 chr1 242095009 242095118 -40098546 - FLAM_C SINE Alu -12 131 22 2440 73 7 0 chr1 242095217 242095517 -40098147 + AluSp SINE Alu 1 302 -11 1470 186 54 0 chr1 242095753 242096032 -40097632 - AluJb SINE Alu -18 294 1 3393 174 16 4 chr1 242096635 242097181 -40096483 + MER41D LTR ERV1 1 553 -4 279 315 71 31 chr1 242097414 242097500 -40096164 + MIR3 SINE MIR 77 171 -37 471 223 161 0 chr1 242097500 242097612 -40096052 + MER94 DNA DNA 2 131 -3 279 315 71 31 chr1 242097612 242097652 -40096012 + MIR3 SINE MIR 171 208 0 805 186 0 0 chr1 242097995 242098135 -40095529 + FLAM_C SINE Alu 2 141 -2 188 416 0 0 chr1 242098376 242098453 -40095211 - L2 LINE L2 -5 3267 3191 1093 149 12 0 chr1 242099534 242099702 -40093962 - MER58B DNA MER1_type 0 341 172 461 202 10 19 chr1 242099710 242099814 -40093850 + U5 snRNA snRNA 14 116 0 2065 128 0 0 chr1 242099844 242100163 -40093501 + AluSx SINE Alu 1 319 0 316 254 16 0 chr1 242100163 242100226 -40093438 - MER58B DNA MER1_type -160 181 1 678 99 11 0 chr1 242100376 242100467 -40093197 - AluSg SINE Alu -217 93 2 2325 111 3 0 chr1 242100724 242101031 -40092633 + AluSg SINE Alu 2 309 -1 2403 101 3 0 chr1 242101666 242101974 -40091690 - AluSg SINE Alu -1 309 1 2278 95 0 0 chr1 242102541 242102837 -40090827 + AluSg SINE Alu 1 296 -14 256 277 32 0 chr1 242102968 242103062 -40090602 + L2 LINE L2 2864 2960 -312 2308 57 0 7 chr1 242103331 242103647 -40090017 - AluY SINE Alu 0 314 1 184 267 80 53 chr1 242103655 242103730 -40089934 + L2 LINE L2 3188 3264 -8 1649 169 18 7 chr1 242103812 242104096 -40089568 - AluJo SINE Alu -21 291 5 2250 67 0 60 chr1 242104108 242104423 -40089241 - AluSq SINE Alu -17 296 1 3795 147 44 44 chr1 242105009 242105851 -40087813 - L1MA4 LINE L1 -2 6154 5298 4723 100 11 17 chr1 242105859 242106481 -40087183 - L1PB2 LINE L1 -2 6149 5530 2406 87 6 3 chr1 242106481 242106793 -40086871 - AluSq SINE Alu 0 313 1 4723 100 11 17 chr1 242106793 242106832 -40086832 - L1PB2 LINE L1 -621 5530 5492 2305 116 0 3 chr1 242107158 242107469 -40086195 - AluSq SINE Alu -3 310 1 22 56 0 0 chr1 242108901 242108937 -40084727 + AT_rich Low_complexity Low_complexity 1 36 0 237 229 43 57 chr1 242109237 242109307 -40084357 + MIR SINE MIR 30 98 -110 283 280 107 13 chr1 242109388 242109538 -40084126 + MER103 DNA DNA 1 164 -2 1337 85 11 0 chr1 242110938 242111115 -40082549 - AluSq SINE Alu 0 313 135 253 285 49 90 chr1 242111227 242111309 -40082355 + MIR3 SINE MIR 70 154 -54 216 0 0 0 chr1 242111309 242111333 -40082331 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2225 76 0 28 chr1 242111335 242111624 -40082040 - AluSx SINE Alu -31 281 1 253 285 49 90 chr1 242111624 242111682 -40081982 + MIR3 SINE MIR 155 207 -1 426 20 0 0 chr1 242111877 242111928 -40081736 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 192 77 0 0 chr1 242111954 242111980 -40081684 + (CACCAT)n Simple_repeat Simple_repeat 5 30 0 181 351 97 9 chr1 242111980 242112094 -40081570 - MIR SINE MIR -123 139 16 282 324 44 103 chr1 242112197 242112626 -40081038 - L2 LINE L2 0 3272 2869 418 247 0 0 chr1 242114087 242114172 -40079492 - MER45A DNA AcHobo -1 177 93 653 238 19 68 chr1 242114426 242114632 -40079032 - MIR SINE MIR -44 218 23 846 172 0 0 chr1 242115273 242115401 -40078263 + FLAM_A SINE Alu 5 132 -1 227 318 84 9 chr1 242116394 242116501 -40077163 - L2 LINE L2 -995 2319 2205 267 267 88 92 chr1 242116516 242116733 -40076931 - MIR SINE MIR 0 262 47 247 365 81 25 chr1 242116811 242116904 -40076760 - L2 LINE L2 -1133 2181 2095 2214 135 3 0 chr1 242116904 242117215 -40076449 + AluSx SINE Alu 1 312 0 247 365 81 25 chr1 242117215 242117567 -40076097 - L2 LINE L2 -1219 2095 1711 23 0 0 0 chr1 242117603 242117626 -40076038 + AT_rich Low_complexity Low_complexity 1 23 0 2134 80 25 7 chr1 242118896 242119195 -40074469 + AluSc SINE Alu 1 304 0 1726 153 6 61 chr1 242119791 242120118 -40073546 + AluJb SINE Alu 1 309 -3 2293 105 0 0 chr1 242121936 242122232 -40071432 - AluSc SINE Alu -13 296 1 1020 234 29 0 chr1 242123372 242123581 -40070083 + MER20 DNA MER1_type 2 216 -3 2005 87 3 50 chr1 242123689 242124014 -40069650 + AluSx SINE Alu 1 311 0 307 392 74 14 chr1 242124368 242124585 -40069079 + L2 LINE L2 2995 3224 -48 2368 143 22 6 chr1 242124623 242124979 -40068685 - THE1B LTR MaLR -2 362 1 1006 202 71 74 chr1 242125287 242125523 -40068141 - MER2 DNA MER2_type -5 340 104 2452 61 7 0 chr1 242125523 242125818 -40067846 - AluY SINE Alu -14 297 1 1006 202 71 74 chr1 242125818 242125917 -40067747 - MER2 DNA MER2_type -241 104 6 3882 208 43 48 chr1 242126331 242127198 -40066466 + MER21B LTR ERV1 1 862 -1 2103 120 0 25 chr1 242127424 242127740 -40065924 + AluSx SINE Alu 1 308 -4 208 278 65 37 chr1 242127865 242127973 -40065691 + L2 LINE L2 3162 3272 0 2353 84 0 0 chr1 242128590 242128887 -40064777 + AluY SINE Alu 1 297 -14 303 85 0 0 chr1 242128892 242128939 -40064725 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 2086 116 0 43 chr1 242129351 242129653 -40064011 + AluSx SINE Alu 1 289 -23 32 0 0 0 chr1 242129653 242129685 -40063979 + AT_rich Low_complexity Low_complexity 1 32 0 267 319 26 0 chr1 242230627 242230740 -39962924 - L1MC4 LINE L1 -2 8040 7925 292 282 97 28 chr1 242230768 242231016 -39962648 - L1 LINE L1 -1627 4519 4255 2703 12 0 43 chr1 242231144 242231467 -39962197 + AluYa5 SINE Alu 3 311 0 1321 112 0 0 chr1 242231474 242231653 -39962011 + AluSg/x SINE Alu 120 298 -14 421 318 20 20 chr1 242231716 242231867 -39961797 - MIR3 SINE MIR -48 160 10 192 152 0 0 chr1 242232050 242232083 -39961581 + CT-rich Low_complexity Low_complexity 2 34 0 635 168 11 0 chr1 242232093 242232188 -39961476 + LTR39 LTR ERV1 291 386 -397 207 301 65 11 chr1 242233676 242233769 -39959895 - L3 LINE CR1 -8 1569 1472 28 29 0 0 chr1 242233974 242234009 -39959655 + AT_rich Low_complexity Low_complexity 1 35 0 533 175 0 39 chr1 242234285 242234388 -39959276 - MLT1J2 LTR MaLR 0 450 352 458 279 92 48 chr1 242234449 242234678 -39958986 - MLT1J2 LTR MaLR -211 239 1 488 175 146 0 chr1 242235692 242235795 -39957869 - L1MB4 LINE L1 0 6180 6063 382 282 127 21 chr1 242236408 242236502 -39957162 - MIR SINE MIR 0 262 179 469 0 33 0 chr1 242236502 242236563 -39957101 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 1984 132 21 0 chr1 242236564 242236845 -39956819 - AluSx SINE Alu -25 287 1 382 282 127 21 chr1 242236845 242236890 -39956774 - MIR SINE MIR -82 180 106 3348 146 33 4 chr1 242237927 242238442 -39955222 + MER72 LTR ERV1 1 530 -192 298 169 22 0 chr1 242238457 242238546 -39955118 + (TA)n Simple_repeat Simple_repeat 2 92 0 1058 166 16 26 chr1 242238558 242238751 -39954913 + MER72 LTR ERV1 532 722 0 3313 95 0 30 chr1 242240755 242241217 -39952447 - L1PB1 LINE L1 -1 6150 5703 1312 84 0 0 chr1 242241403 242241570 -39952094 - L1PB1 LINE L1 -487 5664 5498 2213 133 46 25 chr1 242241570 242241937 -39951727 - THE1C LTR MaLR 0 375 1 8208 127 49 5 chr1 242241937 242243172 -39950492 - THE1C-int LTR MaLR 0 1580 291 230 296 80 0 chr1 242243615 242243703 -39949961 + L2 LINE L2 3132 3226 -46 183 277 84 48 chr1 242244317 242244400 -39949264 + L3b LINE CR1 1292 1377 -206 323 315 39 8 chr1 242244453 242244583 -39949081 - MIR SINE MIR -80 182 49 226 283 19 0 chr1 242245004 242245057 -39948607 - MIR3 SINE MIR -44 164 111 30 59 0 0 chr1 242245288 242245339 -39948325 + AT_rich Low_complexity Low_complexity 1 51 0 243 191 0 32 chr1 242245357 242245420 -39948244 - L1ME4a LINE L1 -95 6026 5966 204 40 0 0 chr1 242245528 242245553 -39948111 + (CA)n Simple_repeat Simple_repeat 1 25 0 195 333 76 38 chr1 242245890 242245995 -39947669 + L2 LINE L2 3197 3305 -8 695 333 159 8 chr1 242246084 242246573 -39947091 + L2 LINE L2 2257 2819 -495 1209 224 0 0 chr1 242246578 242246797 -39946867 - MER58A DNA MER1_type -5 219 1 464 327 111 33 chr1 242246810 242247259 -39946405 + L2 LINE L2 2830 3313 0 570 256 43 50 chr1 242247352 242247633 -39946031 + L1ME4a LINE L1 5550 5828 -293 2042 161 3 3 chr1 242247646 242247962 -39945702 + L1MC1 LINE L1 6011 6326 -7 27 29 0 0 chr1 242247968 242248002 -39945662 + AT_rich Low_complexity Low_complexity 1 34 0 4069 190 94 2 chr1 242248037 242248915 -39944749 - MER45B DNA AcHobo 0 1040 63 366 238 66 66 chr1 242249086 242249267 -39944397 + L1ME4a LINE L1 5936 6116 -5 186 43 0 0 chr1 242249739 242249762 -39943902 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 314 276 23 11 chr1 242249850 242249937 -39943727 + L2 LINE L2 3185 3272 0 203 301 41 0 chr1 242250776 242250849 -39942815 + (GAATG)n Simple_repeat Simple_repeat 5 80 0 1436 201 55 11 chr1 242251987 242252350 -39941314 - L1 LINE L1 -1605 4541 4163 3839 179 11 8 chr1 242252825 242253557 -39940107 + L1 LINE L1 4066 4799 -1347 217 190 0 35 chr1 242253611 242253669 -39939995 + (CCCCG)n Simple_repeat Simple_repeat 3 58 0 21 71 0 0 chr1 242253955 242253997 -39939667 + GC_rich Low_complexity Low_complexity 1 42 0 235 139 0 0 chr1 242254524 242254560 -39939104 - Tigger1 DNA MER2_type -2328 90 55 252 0 0 0 chr1 242254560 242254588 -39939076 + (A)n Simple_repeat Simple_repeat 1 28 0 296 150 17 17 chr1 242254588 242254648 -39939016 - Tigger1 DNA MER2_type -2358 60 1 454 314 127 44 chr1 242255054 242255283 -39938381 - MIR SINE MIR -13 249 2 325 302 51 27 chr1 242255491 242255660 -39938004 + MIR SINE MIR 13 184 -62 1817 178 0 3 chr1 242255838 242256155 -39937509 + AluJo SINE Alu 1 316 0 1813 136 3 93 chr1 242256365 242256689 -39936975 + AluSq SINE Alu 1 295 -18 1550 194 20 0 chr1 242257397 242257701 -39935963 - L1MB7 LINE L1 -23 6161 5852 1875 206 38 99 chr1 242257751 242258309 -39935355 - MER77 LTR ERV1 -27 578 55 1950 146 76 0 chr1 242258336 242258678 -39934986 - L1MB7 LINE L1 -326 5858 5491 2390 95 0 0 chr1 242258700 242258995 -39934669 + AluY SINE Alu 1 295 -16 591 246 28 7 chr1 242259197 242259339 -39934325 - HERV16 LTR ERVL -4791 205 61 5732 219 33 30 chr1 242259339 242261028 -39932636 - L1MB7 LINE L1 -702 5472 3784 414 256 271 0 chr1 242261968 242262101 -39931563 + MER5A DNA MER1_type 15 183 -6 2302 159 83 8 chr1 242262338 242262734 -39930930 - MSTA LTR MaLR 0 428 3 2826 211 20 4 chr1 242263005 242263512 -39930152 - MLT2B2 LTR ERVL 0 515 1 239 163 82 20 chr1 242264594 242264634 -39929030 - MLT1A1 LTR MaLR 0 374 332 1991 155 39 27 chr1 242264634 242265064 -39928600 - LTR23 LTR ERV1 0 467 1 1444 175 46 14 chr1 242265064 242265344 -39928320 - MLT1A1 LTR MaLR -40 325 37 831 177 7 7 chr1 242265356 242265503 -39928161 + FRAM SINE Alu 10 156 -20 2299 114 0 3 chr1 242265519 242265827 -39927837 + AluSg SINE Alu 1 307 -3 2124 206 20 0 chr1 242265893 242266284 -39927380 - LTR26E LTR ERV1 0 622 224 1887 140 27 7 chr1 242266284 242266577 -39927087 + MER50 LTR ERV1 1 299 -435 811 250 22 0 chr1 242266901 242267081 -39926583 + MER5A DNA MER1_type 4 187 -2 459 274 206 14 chr1 242267280 242267499 -39926165 + MIR SINE MIR 2 262 0 308 322 104 0 chr1 242267585 242267700 -39925964 + MIR SINE MIR 40 166 -96 * 447 332 15 41 chr1 242267692 242267888 -39925776 - MIR SINE MIR -43 219 29 215 224 0 0 chr1 242268038 242268096 -39925568 + A-rich Low_complexity Low_complexity 1 58 0 294 238 0 0 chr1 242268846 242268909 -39924755 + MIR SINE MIR 82 144 -64 180 298 29 48 chr1 242270233 242270337 -39923327 + L2 LINE L2 2980 3081 -191 206 250 0 0 chr1 242270514 242270562 -39923102 + L2 LINE L2 3265 3312 -1 201 74 0 0 chr1 242270834 242270861 -39922803 + (TTG)n Simple_repeat Simple_repeat 1 27 0 197 305 17 0 chr1 242271154 242271213 -39922451 + L2 LINE L2 3248 3307 -6 386 100 62 0 chr1 242271731 242271811 -39921853 - L1MA4A LINE L1 0 6303 6219 7526 176 24 5 chr1 242271815 242274179 -39919485 - L1MA4A LINE L1 -162 6141 3732 1384 183 33 0 chr1 242274191 242274465 -39919199 + L1M2 LINE L1 5 287 -6562 242 364 24 15 chr1 242275712 242275825 -39917839 + MIR SINE MIR 2 116 -92 286 316 77 48 chr1 242276118 242276286 -39917378 - MIR3 SINE MIR -7 201 29 259 264 198 0 chr1 242276422 242276513 -39917151 + MER81 DNA DNA 3 111 -3 180 0 0 0 chr1 242277297 242277317 -39916347 + (CA)n Simple_repeat Simple_repeat 1 20 0 25 31 0 0 chr1 242277503 242277535 -39916129 + AT_rich Low_complexity Low_complexity 1 32 0 2303 240 50 14 chr1 242277858 242278561 -39915103 - L1MC4 LINE L1 -489 7553 6826 1215 183 52 8 chr1 242278561 242278813 -39914851 + AluJo SINE Alu 44 306 -6 896 203 75 112 chr1 242278839 242279147 -39914517 - L1MC4 LINE L1 -1212 6830 6537 1610 203 3 3 chr1 242279147 242279443 -39914221 - AluJb SINE Alu -16 296 1 896 203 75 112 chr1 242279443 242279519 -39914145 - L1MC4 LINE L1 -1505 6537 6460 702 289 176 22 chr1 242279845 242280604 -39913060 - L1MEc LINE L1 -4517 2605 1730 531 326 43 17 chr1 242280598 242280945 -39912719 - L1MEc LINE L1 -4937 1486 1131 * 252 0 0 0 chr1 242281356 242281384 -39912280 + (TA)n Simple_repeat Simple_repeat 2 29 0 2270 108 0 0 chr1 242281384 242281679 -39911985 - AluSx SINE Alu -17 295 1 495 278 53 74 chr1 242281755 242282172 -39911492 - L1MEc LINE L1 -5956 467 60 1688 183 0 49 chr1 242282949 242283255 -39910409 - AluSx SINE Alu -21 291 1 1427 179 12 98 chr1 242283984 242284198 -39909466 - MLT1A2 LTR MaLR 0 374 210 438 36 0 0 chr1 242284198 242284254 -39909410 + (GA)n Simple_repeat Simple_repeat 2 57 0 1427 179 12 98 chr1 242284254 242284448 -39909216 - MLT1A2 LTR MaLR -164 210 1 301 345 0 18 chr1 242284546 242284659 -39909005 - MIR3 SINE MIR -34 174 64 1795 252 46 7 chr1 242284661 242285201 -39908463 - L1MD3 LINE L1 -31 7964 7404 1434 213 129 92 chr1 242286059 242286142 -39907522 - MLT1E2 LTR MaLR 0 626 548 1588 208 7 3 chr1 242286142 242286431 -39907233 - AluJo SINE Alu -11 301 12 1434 213 129 92 chr1 242286431 242286934 -39906730 - MLT1E2 LTR MaLR -78 548 18 337 279 20 41 chr1 242288602 242288749 -39904915 + MIR SINE MIR 61 204 -58 200 299 15 15 chr1 242288769 242288836 -39904828 - L2 LINE L2 -12 3301 3235 197 361 7 65 chr1 242289105 242289260 -39904404 - L2 LINE L2 -926 2388 2243 1614 184 30 69 chr1 242289920 242290425 -39903239 - L1MCa LINE L1 -5154 1410 926 3134 144 12 4 chr1 242290506 242291014 -39902650 + MER41E LTR ERV1 1 512 0 3091 209 18 50 chr1 242291017 242292005 -39901659 - L1MCa LINE L1 -5126 919 1 481 252 121 12 chr1 242292156 242292347 -39901317 + LTR1 LTR ERV1 42 221 -564 511 236 32 38 chr1 242292410 242292567 -39901097 + LTR1B LTR ERV1 343 498 -328 1704 170 100 35 chr1 242292687 242293116 -39900548 - LTR2B LTR ERV1 0 490 34 1727 168 33 23 chr1 242293265 242293568 -39900096 - AluJb SINE Alu -6 306 1 2325 174 8 28 chr1 242293678 242294149 -39899515 - MER4E LTR ERV1 -8 771 310 279 79 0 0 chr1 242294281 242294319 -39899345 + (TCTCC)n Simple_repeat Simple_repeat 1 38 0 2091 125 3 0 chr1 242294319 242294606 -39899058 - AluSx SINE Alu -24 288 1 909 152 49 50 chr1 242294606 242295062 -39898602 + L1MCa LINE L1 1753 2245 -4181 295 306 25 0 chr1 242295061 242295221 -39898443 + L1MEc LINE L1 1304 1467 -4929 * 341 213 55 79 chr1 242295220 242295384 -39898280 + L1MC5 LINE L1 7344 7503 -458 272 293 28 21 chr1 242295617 242295769 -39897895 + L1MEc LINE L1 1519 1710 -866 2242 106 3 13 chr1 242295849 242296160 -39897504 + AluSx SINE Alu 1 308 -4 2936 175 14 9 chr1 242296458 242297040 -39896624 + L1MB1 LINE L1 5584 6168 0 216 256 0 23 chr1 242297264 242297440 -39896224 + (CCA)n Simple_repeat Simple_repeat 3 174 0 24 0 0 0 chr1 242297851 242297875 -39895789 + AT_rich Low_complexity Low_complexity 1 24 0 2179 108 0 3 chr1 242297931 242298227 -39895437 - AluSc SINE Alu -13 296 2 314 286 228 5 chr1 242298233 242298820 -39894844 - L1M4 LINE L1 -3313 2833 2116 351 0 0 0 chr1 242299210 242299249 -39894415 + (CA)n Simple_repeat Simple_repeat 1 39 0 471 268 203 32 chr1 242299335 242299735 -39893929 - L1MC/D LINE L1 -2009 5799 5332 235 173 19 0 chr1 242299757 242299809 -39893855 - L1MC/D LINE L1 -848 5298 5246 309 346 88 0 chr1 242300015 242300151 -39893513 - MIR SINE MIR -113 149 2 221 338 104 26 chr1 242300164 242300241 -39893423 + L2 LINE L2 3155 3237 -35 1557 187 103 10 chr1 242300635 242301238 -39892426 + LTR48 LTR ERV1 3 548 -96 183 156 0 0 chr1 242302037 242302069 -39891595 + (TTG)n Simple_repeat Simple_repeat 2 33 0 225 108 0 0 chr1 242302080 242302117 -39891547 + (GTTTG)n Simple_repeat Simple_repeat 2 38 0 284 130 0 0 chr1 242302485 242302531 -39891133 + MER103 DNA DNA 33 78 -88 855 237 108 4 chr1 242302552 242302784 -39890880 - LTR39 LTR ERV1 0 783 528 * 1114 188 55 37 chr1 242302777 242303049 -39890615 - LTR39 LTR ERV1 -386 397 121 1740 165 39 0 chr1 242303049 242303334 -39890330 - AluSx SINE Alu -16 296 1 1321 168 47 156 chr1 242303393 242303989 -39889675 + LTR8A LTR ERV1 183 713 -14 198 241 17 52 chr1 242304041 242304099 -39889565 + L2 LINE L2 3258 3313 0 1529 184 207 20 chr1 242304401 242304851 -39888813 + LTR48 LTR ERV1 1 534 -253 251 125 0 0 chr1 242307715 242307763 -39885901 - AluSc SINE Alu 0 299 252 289 244 61 78 chr1 242307966 242308044 -39885620 - MIR SINE MIR -33 229 152 2381 92 0 0 chr1 242308044 242308348 -39885316 - AluY SINE Alu -7 304 1 289 244 61 78 chr1 242308348 242308384 -39885280 - MIR SINE MIR -110 152 117 333 308 67 0 chr1 242310663 242310767 -39882897 + L2 LINE L2 3202 3312 -1 1712 165 41 11 chr1 242310874 242311484 -39882180 - MER39 LTR ERV1 0 707 1 2273 84 30 0 chr1 242311639 242311937 -39881727 + AluSp SINE Alu 1 307 -6 182 196 0 22 chr1 242311945 242311991 -39881673 + L2 LINE L2 3227 3271 -1 478 148 0 23 chr1 242312107 242312195 -39881469 - AluSg/x SINE Alu -15 295 210 595 195 128 15 chr1 242312328 242312523 -39881141 + L1 LINE L1 3647 3863 -2283 1360 138 13 0 chr1 242312673 242312912 -39880752 - LTR49 LTR ERV1 -353 242 1 2349 71 3 32 chr1 242314657 242314968 -39878696 + AluSg SINE Alu 1 302 -8 910 144 5 48 chr1 242315948 242316156 -39877508 - L1PBa LINE L1 -6031 832 634 966 190 5 0 chr1 242316158 242316353 -39877311 - L1PBa LINE L1 -6665 198 3 11021 129 22 2 chr1 242316465 242318240 -39875424 - Tigger1 DNA MER2_type 0 2418 608 11288 212 7 7 chr1 242319210 242322118 -39871546 - L1 LINE L1 -1662 5126 2139 218 203 0 17 chr1 242322831 242322890 -39870774 + GA-rich Low_complexity Low_complexity 3 60 0 225 167 0 42 chr1 242323466 242323514 -39870150 - L1MC4 LINE L1 -1349 6693 6648 215 325 38 25 chr1 242323606 242323686 -39869978 - MIR SINE MIR -76 186 106 195 125 0 0 chr1 242323691 242323731 -39869933 + (T)n Simple_repeat Simple_repeat 1 40 0 319 209 21 90 chr1 242324222 242324367 -39869297 + MIR SINE MIR 90 216 -46 203 267 0 0 chr1 242326380 242326425 -39867239 + T-rich Low_complexity Low_complexity 2 46 0 185 111 37 93 chr1 242326968 242327022 -39866642 - L2 LINE L2 -14 3299 3249 2114 112 0 53 chr1 242327043 242327366 -39866298 + AluSx SINE Alu 1 306 -6 242 356 107 34 chr1 242327537 242327770 -39865894 - L2 LINE L2 -214 3058 2809 415 219 47 27 chr1 242328096 242328228 -39865436 - MIR SINE MIR -67 141 2 231 222 0 0 chr1 242328392 242328437 -39865227 - MER117 DNA MER1_type -113 84 40 263 203 16 16 chr1 242328763 242328827 -39864837 - L3b LINE CR1 -197 1386 1323 268 354 174 5 chr1 242328944 242329156 -39864508 + MIR SINE MIR 15 262 0 7153 206 20 26 chr1 242330596 242332049 -39861615 + L1M2 LINE L1 682 2125 -4724 214 254 18 0 chr1 242332129 242332184 -39861480 + L2 LINE L2 3215 3270 -2 197 0 0 67 chr1 242333026 242333056 -39860608 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 204 143 82 61 chr1 242333063 242333112 -39860552 + MIR3 SINE MIR 158 207 -1 269 283 92 35 chr1 242334815 242335098 -39858566 - L1 LINE L1 -1627 4519 4221 2786 20 0 0 chr1 242335181 242335487 -39858177 + AluYa5 SINE Alu 1 306 -5 290 279 58 33 chr1 242335826 242336146 -39857518 - L1P LINE L1 -3686 2460 2138 254 138 52 52 chr1 242336192 242336250 -39857414 + MER116 DNA Mariner 5 62 -18 248 254 15 15 chr1 242336807 242336874 -39856790 - HAL1 LINE L1 -794 1713 1647 2016 79 68 7 chr1 242336953 242337255 -39856409 - AluY SINE Alu 0 311 1 803 174 15 0 chr1 242337316 242337448 -39856216 - FRAM SINE Alu -21 155 22 350 295 89 120 chr1 242337448 242337865 -39855799 - HAL1b LINE L1 -918 430 27 2781 145 108 124 chr1 242338110 242338898 -39854766 + MER21A LTR ERV1 18 792 -139 21 0 0 0 chr1 242339217 242339238 -39854426 + GC_rich Low_complexity Low_complexity 1 21 0 212 105 32 105 chr1 242339550 242339645 -39854019 + (CCGCG)n Simple_repeat Simple_repeat 4 91 0 1718 215 30 5 chr1 242342361 242342903 -39850761 + L1M3 LINE L1 4778 5438 -742 355 287 11 64 chr1 242344706 242344894 -39848770 + MER5A DNA MER1_type 7 184 -5 302 373 24 0 chr1 242344953 242345079 -39848585 - MIR3 SINE MIR -44 164 36 386 232 53 11 chr1 242345780 242345875 -39847789 + MER21A LTR ERV1 833 931 0 306 317 43 37 chr1 242346960 242347124 -39846540 - MIR3 SINE MIR -1 207 43 249 297 31 0 chr1 242347127 242347191 -39846473 - L3 LINE CR1 -13 1564 1499 887 287 133 42 chr1 242347586 242348105 -39845559 - L3 LINE CR1 -186 1391 826 202 203 47 47 chr1 242348760 242348824 -39844840 + (CCCCAG)n Simple_repeat Simple_repeat 2 65 0 1161 273 88 42 chr1 242350091 242350766 -39842898 - L1ME3A LINE L1 -196 5908 5198 772 231 92 42 chr1 242350905 242351037 -39842627 - L1ME3A LINE L1 -918 5162 5038 2287 101 0 3 chr1 242351037 242351335 -39842329 - AluSg SINE Alu -13 297 1 772 231 92 42 chr1 242351335 242351510 -39842154 - L1ME3A LINE L1 -1042 5038 4828 2080 117 0 36 chr1 242351510 242351818 -39841846 - AluSx SINE Alu -15 297 1 772 231 92 42 chr1 242351818 242351911 -39841753 - L1ME3A LINE L1 -1252 4828 4741 * 1631 294 67 19 chr1 242351909 242352774 -39840890 - L1ME LINE L1 -4939 1089 260 1118 280 77 46 chr1 242353008 242353514 -39840150 - L1M4 LINE L1 -1769 4377 3841 2340 96 0 3 chr1 242353514 242353816 -39839848 - AluSg SINE Alu -9 301 1 1118 280 77 46 chr1 242353816 242354009 -39839655 - L1M4 LINE L1 -2305 3841 3656 288 115 58 0 chr1 242354015 242354067 -39839597 + Tigger4(Zombi) DNA MER2_type 2014 2068 -663 11125 202 18 28 chr1 242354070 242357407 -39836257 - L1PA16 LINE L1 -16 6150 2853 4724 112 3 10 chr1 242357407 242357998 -39835666 + Tigger4(Zombi) DNA MER2_type 2057 2644 -87 1731 161 129 7 chr1 242357998 242358308 -39835356 - MER7A DNA MER2_type 0 346 1 4724 112 3 10 chr1 242358308 242358395 -39835269 + Tigger4(Zombi) DNA MER2_type 2644 2730 -1 261 239 40 60 chr1 242358509 242358724 -39834940 + MLT1I LTR MaLR 98 305 -244 433 245 39 25 chr1 242358760 242358902 -39834762 + MLT1H LTR MaLR 441 549 0 252 307 102 0 chr1 242359042 242359169 -39834495 + MLT-int LTR MaLR 384 523 -1212 1535 171 14 51 chr1 242359365 242359657 -39834007 + AluJo SINE Alu 1 281 -31 1631 128 54 12 chr1 242359681 242359939 -39833725 + AluSx SINE Alu 1 269 -43 2280 124 0 0 chr1 242359973 242360280 -39833384 + AluSx SINE Alu 4 310 -2 31 26 0 0 chr1 242360280 242360318 -39833346 + AT_rich Low_complexity Low_complexity 1 38 0 2253 92 16 0 chr1 242360364 242360669 -39832995 + AluSg SINE Alu 1 310 0 14522 26 0 3 chr1 242360854 242363240 -39830424 + L1PA3 LINE L1 3748 6151 -4 2368 326 90 21 chr1 242364248 242364741 -39828923 - ERVL LTR ERVL -2261 3503 3045 2255 135 0 0 chr1 242364741 242365053 -39828611 + AluJb SINE Alu 1 312 0 2368 326 90 21 chr1 242365053 242366241 -39827423 - ERVL LTR ERVL -2719 3045 1675 695 344 38 12 chr1 242366363 242366706 -39826958 - ERVL LTR ERVL -4544 452 101 685 285 4 26 chr1 242366784 242367012 -39826652 - LTR16B LTR ERVL 0 464 242 1097 167 0 0 chr1 242367496 242367652 -39826012 + FRAM SINE Alu 4 159 -7 218 278 135 53 chr1 242367702 242367835 -39825829 - L2 LINE L2 -182 3090 2947 209 273 15 45 chr1 242367834 242367900 -39825764 + L2 LINE L2 3241 3304 -9 * 2280 203 15 13 chr1 242370038 242370496 -39823168 + MER65C LTR ERV1 3 461 0 485 319 57 10 chr1 242371152 242371386 -39822278 - MIR SINE MIR 0 262 14 202 314 189 16 chr1 242371756 242371941 -39821723 + L3 LINE CR1 1353 1569 -8 22 70 0 0 chr1 242372304 242372347 -39821317 + AT_rich Low_complexity Low_complexity 1 43 0 1758 153 66 0 chr1 242372826 242372982 -39820682 - AluJo SINE Alu -20 292 148 285 29 0 0 chr1 242372982 242373016 -39820648 + (TG)n Simple_repeat Simple_repeat 2 35 0 1758 153 66 0 chr1 242373016 242373133 -39820531 - AluJo SINE Alu -164 148 1 288 278 246 0 chr1 242375039 242375165 -39818499 + MIR SINE MIR 100 256 -6 23 54 0 0 chr1 242375495 242375532 -39818132 + AT_rich Low_complexity Low_complexity 1 37 0 2076 117 7 0 chr1 242376550 242376862 -39816802 - AluSx SINE Alu 0 314 1 485 141 0 0 chr1 242377143 242377207 -39816457 - AluJ/FLAM SINE Alu -247 65 2 296 232 351 6 chr1 242377385 242377553 -39816111 - MIR SINE MIR -23 239 14 294 128 21 0 chr1 242377618 242377665 -39815999 - MLT2C2 LTR ERVL 0 464 417 27 62 0 0 chr1 242377685 242377733 -39815931 + AT_rich Low_complexity Low_complexity 1 48 0 423 121 81 0 chr1 242377755 242377904 -39815760 + (TA)n Simple_repeat Simple_repeat 1 161 0 1587 221 104 33 chr1 242377912 242378365 -39815299 - MLT2B1 LTR ERVL -35 485 1 270 357 40 0 chr1 242378525 242378651 -39815013 + L3 LINE CR1 1439 1569 -8 266 273 61 58 chr1 242378786 242378990 -39814674 + MIR SINE MIR 4 252 -10 1576 271 121 26 chr1 242381272 242381808 -39811856 + MLT1K LTR MaLR 2 588 0 255 315 0 11 chr1 242382983 242383072 -39810592 + GA-rich Low_complexity Low_complexity 1 88 0 4970 36 0 2 chr1 242383596 242384152 -39809512 - L1PA5 LINE L1 -4 6150 5596 1807 218 79 116 chr1 242384300 242385083 -39808581 + MER21B LTR ERV1 1 754 -109 3598 155 19 30 chr1 242385591 242386229 -39807435 - L1MB3 LINE L1 -2 6181 5551 915 241 0 0 chr1 242386301 242386459 -39807205 - FAM SINE Alu -17 158 1 1004 254 80 90 chr1 242387869 242388404 -39805260 - MER21B LTR ERV1 -193 670 141 315 256 88 21 chr1 242388433 242388559 -39805105 - MER77 LTR ERV1 -407 198 24 499 296 69 61 chr1 242388730 242388977 -39804687 - MIR SINE MIR -12 250 2 396 256 44 0 chr1 242389620 242389710 -39803954 - MER77 LTR ERV1 -235 370 277 329 154 0 0 chr1 242389679 242389731 -39803933 - MER21B LTR ERV1 -555 308 257 * 21 0 0 0 chr1 242389824 242389845 -39803819 + AT_rich Low_complexity Low_complexity 1 21 0 313 309 49 8 chr1 242389859 242389982 -39803682 + MIR SINE MIR 74 201 -61 4762 14 2 0 chr1 242390324 242391061 -39802603 - L1P2 LINE L1 -362 5793 5056 223 279 23 35 chr1 242391189 242391275 -39802389 + L2 LINE L2 2985 3069 -203 2003 145 7 0 chr1 242391707 242392004 -39801660 - AluSx SINE Alu -13 299 1 700 186 39 45 chr1 242392129 242392285 -39801379 + MLT1B LTR MaLR 1 155 -235 27 29 0 0 chr1 242392611 242392645 -39801019 + AT_rich Low_complexity Low_complexity 1 34 0 653 165 0 0 chr1 242392645 242392742 -39800922 - AluJo/FRAM SINE Alu -26 286 190 1634 11 0 0 chr1 242392743 242392919 -39800745 + AluYb8 SINE Alu 1 176 -142 475 346 15 0 chr1 242394306 242394439 -39799225 - MIR3 SINE MIR -30 178 44 33 56 0 0 chr1 242394574 242394628 -39799036 + AT_rich Low_complexity Low_complexity 1 54 0 243 343 10 39 chr1 242394656 242394758 -39798906 + MIR SINE MIR 42 140 -68 201 74 0 0 chr1 242396201 242396228 -39797436 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 322 290 30 10 chr1 242396268 242396368 -39797296 - MIR SINE MIR -87 121 20 286 279 75 88 chr1 242397077 242397224 -39796440 + MIR SINE MIR 3 147 -115 1171 273 110 29 chr1 242397226 242397643 -39796021 - MLT1J LTR MaLR -4 507 57 312 120 0 0 chr1 242398352 242398405 -39795259 - MLT2D LTR ERVL -3 411 367 225 154 0 0 chr1 242398425 242398464 -39795200 + (TG)n Simple_repeat Simple_repeat 2 40 0 2019 174 17 23 chr1 242398466 242398846 -39794818 - MLT2D LTR ERVL -40 480 5 261 0 0 0 chr1 242399065 242399094 -39794570 + (CA)n Simple_repeat Simple_repeat 1 29 0 832 274 11 34 chr1 242399645 242399911 -39793753 + MIR SINE MIR 1 260 -2 239 173 19 0 chr1 242402009 242402061 -39791603 + (TA)n Simple_repeat Simple_repeat 2 54 0 507 280 58 43 chr1 242403373 242403630 -39790034 - MIR SINE MIR 0 262 2 259 175 0 0 chr1 242404498 242404538 -39789126 + MER34 LTR ERV1 7 46 -496 1486 168 99 92 chr1 242404561 242404709 -39788955 + MER39 LTR ERV1 270 415 -292 1657 196 0 7 chr1 242404709 242404994 -39788670 + AluJb SINE Alu 1 283 -29 1486 168 99 92 chr1 242404994 242405280 -39788384 + MER39 LTR ERV1 415 707 0 384 207 15 104 chr1 242405307 242405442 -39788222 + MER103 DNA DNA 2 124 -42 1361 289 70 19 chr1 242406025 242406665 -39786999 - HAL1 LINE L1 -742 1765 1093 605 316 105 29 chr1 242406689 242407031 -39786633 - MLT1J2 LTR MaLR -3 447 80 307 304 81 84 chr1 242407168 242407255 -39786409 - HAL1 LINE L1 -1429 1078 992 1731 170 0 27 chr1 242407255 242407555 -39786109 - AluSx SINE Alu -3 309 18 307 304 81 84 chr1 242407555 242407799 -39785865 - HAL1 LINE L1 -1515 992 748 582 210 139 0 chr1 242409920 242410064 -39783600 + MER69A DNA AcHobo 2 165 -12 261 313 8 31 chr1 242410433 242410561 -39783103 + GA-rich Low_complexity Low_complexity 1 125 0 311 261 150 68 chr1 242412052 242412286 -39781378 - MIR SINE MIR -1 261 9 209 366 98 0 chr1 242412288 242412370 -39781294 - MIR SINE MIR -85 123 34 206 322 100 22 chr1 242412757 242412847 -39780817 - L3b LINE CR1 -31 1552 1456 222 37 0 0 chr1 242412945 242412972 -39780692 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 1634 106 172 0 chr1 242412974 242413230 -39780434 - AluSg SINE Alu 0 300 1 464 297 24 18 chr1 242414241 242414406 -39779258 + L2 LINE L2 2147 2312 -1002 329 0 24 0 chr1 242414411 242414452 -39779212 + (CA)n Simple_repeat Simple_repeat 1 42 0 483 87 0 0 chr1 242414701 242414770 -39778894 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 414 288 45 8 chr1 242415391 242415523 -39778141 + L1ME1 LINE L1 6021 6157 -9 406 268 139 19 chr1 242416693 242416902 -39776762 - MIR SINE MIR -23 239 6 197 335 136 23 chr1 242418258 242418434 -39775230 + L2 LINE L2 2871 3066 -206 253 257 68 0 chr1 242419090 242419164 -39774500 - L2 LINE L2 -36 3277 3199 218 295 0 16 chr1 242419183 242419244 -39774420 + L2 LINE L2 3242 3301 -12 896 309 88 17 chr1 242419244 242419655 -39774009 + L2 LINE L2 2097 2536 -778 450 269 97 22 chr1 242419652 242419786 -39773878 + L2 LINE L2 3165 3308 -5 * 1057 330 40 20 chr1 242421057 242421511 -39772153 - LTR16B LTR ERVL -1 463 1 207 176 0 0 chr1 242422196 242422230 -39771434 + GA-rich Low_complexity Low_complexity 1 34 0 207 324 191 37 chr1 242423901 242424037 -39769627 - L2 LINE L2 0 3272 3116 216 0 0 0 chr1 242424470 242424494 -39769170 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1866 179 17 0 chr1 242426651 242426952 -39766712 + AluSx SINE Alu 1 306 -6 209 290 73 40 chr1 242427048 242427172 -39766492 - L2 LINE L2 0 3272 3145 199 343 43 0 chr1 242428665 242428735 -39764929 + MIR SINE MIR 33 105 -103 1806 113 12 16 chr1 242429550 242429806 -39763858 - AluSx SINE Alu -57 255 1 257 301 14 0 chr1 242430050 242430123 -39763541 - L2 LINE L2 -2 3270 3197 1759 203 0 3 chr1 242430209 242430520 -39763144 - AluJo SINE Alu -2 310 1 756 225 193 68 chr1 242430747 242431071 -39762593 + HAL1 LINE L1 977 1259 -1248 3534 100 8 0 chr1 242431071 242431552 -39762112 + L1PA13 LINE L1 5677 6161 -2 756 225 193 68 chr1 242431552 242431730 -39761934 + HAL1 LINE L1 1259 1542 -965 1908 214 128 40 chr1 242432090 242432771 -39760893 - HsTC2a DNA MER2_type -3 741 1 355 279 41 0 chr1 242432913 242433037 -39760627 - MIR SINE MIR -62 146 41 269 364 23 11 chr1 242433436 242433524 -39760140 + L2 LINE L2 3158 3246 -26 277 407 66 0 chr1 242433607 242433789 -39759875 - L2 LINE L2 -558 2756 2563 361 320 104 39 chr1 242433841 242434350 -39759314 - L2 LINE L2 -1159 2155 1614 394 323 117 0 chr1 242436042 242436259 -39757405 + MIR SINE MIR 9 256 -6 706 216 147 5 chr1 242436585 242436775 -39756889 - MIR SINE MIR -10 252 36 383 203 14 0 chr1 242437331 242437405 -39756259 + MER96 DNA MER1_type? 11 85 -90 1904 196 14 14 chr1 242437465 242437812 -39755852 - MLT1A1 LTR MaLR 0 365 19 940 142 33 104 chr1 242439458 242439670 -39753994 + AluJo SINE Alu 5 201 -111 286 263 0 0 chr1 242440876 242440933 -39752731 - MER94 DNA DNA 0 134 78 1921 194 8 30 chr1 242442104 242442471 -39751193 + MLT1A1 LTR MaLR 7 365 0 3610 101 6 0 chr1 242442630 242443106 -39750558 + L1PA14 LINE L1 5680 6158 -3 1162 214 39 7 chr1 242443151 242443431 -39750233 - MER114 LTR ERV -35 613 325 616 220 80 30 chr1 242443488 242443688 -39749976 - MER114 LTR ERV -435 213 4 265 286 0 0 chr1 242445394 242445464 -39748200 - MIR SINE MIR -120 142 73 232 240 100 60 chr1 242445683 242445783 -39747881 + L2 LINE L2 3154 3257 -15 200 253 308 0 chr1 242445925 242446016 -39747648 - L2 LINE L2 -2 3311 3193 305 306 112 28 chr1 242446406 242446602 -39747062 - MIR SINE MIR -54 208 1 236 335 47 71 chr1 242446602 242446885 -39746779 + L2 LINE L2 2640 2914 -400 195 114 0 0 chr1 242447577 242447612 -39746052 + (TC)n Simple_repeat Simple_repeat 2 36 0 2111 97 22 0 chr1 242450593 242450898 -39742766 + AluSx SINE Alu 1 311 0 453 46 231 0 chr1 242452127 242452192 -39741472 + MADE1 DNA Mariner 1 80 0 753 272 54 21 chr1 242453074 242453326 -39740338 + MIR SINE MIR 4 252 -10 270 198 156 10 chr1 242453519 242453615 -39740049 + L1ME4a LINE L1 5990 6099 -22 26 0 0 0 chr1 242453636 242453662 -39740002 + AT_rich Low_complexity Low_complexity 1 26 0 341 42 0 21 chr1 242454443 242454491 -39739173 + (TTTTG)n Simple_repeat Simple_repeat 2 48 0 1216 56 0 0 chr1 242454491 242454634 -39739030 - MER107 DNA MER1_type -52 145 3 727 210 18 30 chr1 242454878 242455045 -39738619 - MIR SINE MIR -21 241 77 180 345 103 9 chr1 242455266 242455382 -39738282 - L2 LINE L2 -5 3267 3141 438 312 40 6 chr1 242455614 242455787 -39737877 - MIR SINE MIR -81 181 3 253 308 112 0 chr1 242456510 242456617 -39737047 - MIR SINE MIR -52 210 92 246 279 58 0 chr1 242456938 242457024 -39736640 + MIR SINE MIR 51 141 -121 182 289 79 26 chr1 242457153 242457229 -39736435 + L3b LINE CR1 1477 1556 -27 186 71 0 0 chr1 242457595 242457623 -39736041 + (A)n Simple_repeat Simple_repeat 1 28 0 326 268 98 18 chr1 242458955 242459067 -39734597 - MIR SINE MIR -62 146 26 437 307 118 19 chr1 242459536 242459748 -39733916 - MIR SINE MIR -10 252 20 852 257 0 11 chr1 242459851 242460030 -39733634 - MER45A DNA AcHobo -1 177 1 2249 118 0 9 chr1 242461127 242461442 -39732222 - AluSx SINE Alu 0 312 1 194 273 163 52 chr1 242462193 242462365 -39731299 - L3 LINE CR1 -17 1560 1370 462 189 116 0 chr1 242463378 242463473 -39730191 - MLT1D LTR MaLR 0 626 521 3737 84 10 2 chr1 242463473 242463983 -39729681 - L1P LINE L1 -2040 4106 3593 2733 96 0 3 chr1 242463983 242464332 -39729332 + L1PA7 LINE L1 5791 6154 0 1973 184 47 13 chr1 242464335 242464720 -39728944 - MLT1D LTR MaLR -106 399 2 566 328 48 10 chr1 242464976 242465370 -39728294 - L1ME LINE L1 -365 5756 5353 267 270 67 90 chr1 242466767 242466945 -39726719 + MIR SINE MIR 29 202 -60 446 298 158 5 chr1 242467989 242468204 -39725460 - MIR SINE MIR -13 249 2 1940 137 30 0 chr1 242468247 242468423 -39725241 - AluSx SINE Alu -4 308 118 279 0 0 0 chr1 242468423 242468454 -39725210 + (TG)n Simple_repeat Simple_repeat 2 32 0 1940 137 30 0 chr1 242468454 242468576 -39725088 - AluSx SINE Alu -194 118 1 446 284 65 19 chr1 242468660 242468815 -39724849 + MIR SINE MIR 55 216 -46 26 30 0 0 chr1 242469673 242469706 -39723958 + AT_rich Low_complexity Low_complexity 1 33 0 225 316 63 0 chr1 242471331 242471410 -39722254 - L2 LINE L2 -1 3312 3229 21 0 0 0 chr1 242472045 242472066 -39721598 + AT_rich Low_complexity Low_complexity 1 21 0 212 321 75 0 chr1 242473460 242473566 -39720098 - L2 LINE L2 -9 3263 3150 2272 125 0 0 chr1 242473707 242474019 -39719645 + AluSx SINE Alu 1 312 0 362 289 164 4 chr1 242474407 242474632 -39719032 + MIR SINE MIR 2 262 0 215 292 60 65 chr1 242476184 242476352 -39717312 - MER5A DNA MER1_type -22 167 1 446 230 104 15 chr1 242476414 242476549 -39717115 + MIR SINE MIR 47 193 -69 1567 168 75 7 chr1 242476577 242476705 -39716959 + AluJo SINE Alu 1 119 -193 252 0 0 0 chr1 242476705 242476733 -39716931 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1567 168 75 7 chr1 242476733 242476896 -39716768 + AluJo SINE Alu 119 312 0 670 190 0 3 chr1 242477417 242477655 -39716009 + AluJo SINE Alu 2 310 -2 1991 147 0 3 chr1 242477759 242478045 -39715619 + AluSx SINE Alu 1 285 -27 195 352 29 0 chr1 242478336 242478441 -39715223 + L2 LINE L2 2931 3038 -234 411 229 96 32 chr1 242479229 242479386 -39714278 - MIR3 SINE MIR -6 202 36 466 291 36 66 chr1 242479650 242479952 -39713712 + L2 LINE L2 3021 3313 0 2371 112 3 0 chr1 242480527 242480839 -39712825 - AluSp SINE Alu 0 313 1 4158 91 2 14 chr1 242481841 242482401 -39711263 + MER41A LTR ERV1 1 553 -1 191 235 98 0 chr1 242482722 242482773 -39710891 - MIR SINE MIR -91 117 62 210 238 0 0 chr1 242483069 242483111 -39710553 + CT-rich Low_complexity Low_complexity 1 42 0 438 235 68 30 chr1 242483945 242484077 -39709587 - L2 LINE L2 0 3272 3136 1463 266 89 14 chr1 242484364 242484872 -39708792 - LTR48B LTR ERV1 -17 627 82 280 197 0 61 chr1 242484860 242484926 -39708738 - LTR29 LTR ERV1 -424 198 137 * 349 288 68 0 chr1 242484908 242485026 -39708638 - MER34 LTR ERV1 -416 126 1 27 29 0 0 chr1 242485710 242485744 -39707920 + AT_rich Low_complexity Low_complexity 1 34 0 348 241 71 9 chr1 242485788 242485900 -39707764 + MIR SINE MIR 26 144 -64 22 0 0 0 chr1 242486875 242486897 -39706767 + AT_rich Low_complexity Low_complexity 1 22 0 350 205 24 87 chr1 242487025 242487152 -39706512 + L2 LINE L2 2958 3076 -196 500 249 55 6 chr1 242487340 242487505 -39706159 + MIR SINE MIR 61 233 -29 283 176 0 27 chr1 242487685 242487759 -39705905 + CT-rich Low_complexity Low_complexity 2 73 0 1901 156 18 3 chr1 242488929 242489255 -39704409 + L1MC1 LINE L1 6002 6332 -1 2198 130 0 3 chr1 242489326 242489627 -39704037 + AluSg SINE Alu 1 300 -10 1557 265 30 47 chr1 242489637 242490146 -39703518 + MLT1G LTR MaLR 51 550 -40 1797 159 67 47 chr1 242490305 242490664 -39703000 + MER47A DNA MER2_type 1 366 0 377 243 197 46 chr1 242491689 242491841 -39701823 - MIR3 SINE MIR -11 197 23 1229 212 125 94 chr1 242492692 242493221 -39700443 - MLT1H LTR MaLR 0 549 5 540 200 15 15 chr1 242493268 242493398 -39700266 + L1MB8 LINE L1 6049 6178 0 225 324 15 15 chr1 242493541 242493609 -39700055 - L3b LINE CR1 -1 1582 1515 220 408 0 0 chr1 242494404 242494556 -39699108 + GA-rich Low_complexity Low_complexity 1 152 0 737 223 35 35 chr1 242495483 242495680 -39697984 - MIR SINE MIR -56 206 10 720 283 30 9 chr1 242496184 242496417 -39697247 + MIR SINE MIR 5 242 -20 352 265 105 26 chr1 242497181 242497370 -39696294 + MIR SINE MIR 32 231 -31 214 298 0 0 chr1 242498118 242498175 -39695489 - L2 LINE L2 -6 3307 3251 217 268 0 18 chr1 242498523 242498579 -39695085 + MIR SINE MIR 94 148 -114 219 69 0 0 chr1 242499086 242499115 -39694549 + (TA)n Simple_repeat Simple_repeat 1 29 0 1439 257 59 109 chr1 242499412 242500158 -39693506 - MER21B LTR ERV1 -149 714 6 809 338 99 25 chr1 242500420 242501444 -39692220 - L2 LINE L2 -1141 2173 1075 279 0 0 0 chr1 242501515 242501546 -39692118 + (GA)n Simple_repeat Simple_repeat 2 32 0 457 273 35 113 chr1 242501863 242502060 -39691604 + MER102b DNA MER1_type 3 167 -1261 2448 85 0 3 chr1 242502060 242502367 -39691297 + AluSx SINE Alu 1 306 -6 457 273 35 113 chr1 242502367 242502488 -39691176 + MER102b DNA MER1_type 167 296 -45 318 341 72 24 chr1 242502587 242502836 -39690828 - L2 LINE L2 -2813 501 241 399 316 24 56 chr1 242504908 242505158 -39688506 - MIR SINE MIR 0 262 21 481 247 153 0 chr1 242505621 242505791 -39687873 + L1ME3A LINE L1 5513 5708 -454 424 217 56 37 chr1 242505825 242505986 -39687678 + L1ME3A LINE L1 5813 5976 -194 234 0 0 0 chr1 242506004 242506030 -39687634 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr1 242506176 242506199 -39687465 + AT_rich Low_complexity Low_complexity 1 23 0 228 290 0 0 chr1 242506429 242506498 -39687166 - L3 LINE CR1 -106 1471 1403 2917 138 38 2 chr1 242506540 242507018 -39686646 - L1MB3 LINE L1 -1 6182 5688 679 342 201 24 chr1 242507032 242508182 -39685482 - L3 LINE CR1 -185 1392 40 2272 106 3 0 chr1 242508269 242508571 -39685093 - AluSx SINE Alu -9 303 1 4448 74 2 0 chr1 242508908 242509461 -39684203 + MER41A LTR ERV1 1 554 0 200 160 40 20 chr1 242509748 242509798 -39683866 + L3 LINE CR1 1527 1577 0 205 255 0 0 chr1 242510377 242510424 -39683240 + (CCA)n Simple_repeat Simple_repeat 2 48 0 220 284 119 9 chr1 242511160 242511269 -39682395 + L3b LINE CR1 1271 1391 -192 907 320 14 33 chr1 242511487 242511909 -39681755 - L2 LINE L2 -669 2645 2232 2478 91 0 0 chr1 242512424 242512732 -39680932 - AluSq SINE Alu -5 308 1 214 271 107 30 chr1 242513723 242513888 -39679776 - MIR SINE MIR -50 212 31 454 181 257 0 chr1 242514310 242514454 -39679210 - MER5A DNA MER1_type 0 189 9 192 139 28 0 chr1 242514468 242514504 -39679160 - MIR3 SINE MIR -15 193 157 352 313 14 28 chr1 242514713 242514857 -39678807 - MIR3 SINE MIR -49 159 18 685 253 6 17 chr1 242516653 242516827 -39676837 - MIR3 SINE MIR -7 201 30 269 208 132 38 chr1 242517340 242517446 -39676218 + MIR3 SINE MIR 1 116 -92 243 354 12 0 chr1 242517679 242517761 -39675903 - MIR SINE MIR -127 135 53 198 0 0 0 chr1 242517869 242517891 -39675773 + (GA)n Simple_repeat Simple_repeat 1 22 0 606 258 72 63 chr1 242517899 242518217 -39675447 - MER102a DNA MER1_type -9 321 1 223 282 128 0 chr1 242519604 242519682 -39673982 + MIR SINE MIR 53 140 -122 461 220 169 62 chr1 242520189 242520366 -39673298 + MER63A DNA MER1_type 5 200 -10 195 339 87 26 chr1 242520577 242520692 -39672972 - MIR SINE MIR -67 141 20 406 193 133 0 chr1 242522182 242522265 -39671399 + L2 LINE L2 3211 3304 -9 235 297 279 0 chr1 242523152 242523263 -39670401 - L2 LINE L2 -1 3312 3171 722 315 10 52 chr1 242523707 242523951 -39669713 - L3 LINE CR1 -431 1146 916 2074 115 0 3 chr1 242523951 242524247 -39669417 - AluSg1 SINE Alu -14 295 1 722 315 10 52 chr1 242524247 242524310 -39669354 - L3 LINE CR1 -661 916 852 217 226 170 0 chr1 242524660 242524713 -39668951 - L2 LINE L2 -5 3267 3206 281 354 92 31 chr1 242526562 242526692 -39666972 + MIR3 SINE MIR 34 171 -37 189 188 0 0 chr1 242526810 242526842 -39666822 + MER5B DNA MER1_type 14 45 -133 273 98 0 0 chr1 242527378 242527419 -39666245 + (CA)n Simple_repeat Simple_repeat 1 41 0 1988 117 0 10 chr1 242527936 242528234 -39665430 - AluJb SINE Alu -17 295 1 215 200 0 0 chr1 242531189 242531229 -39662435 + (CCG)n Simple_repeat Simple_repeat 1 40 0 360 0 0 0 chr1 242531230 242531270 -39662394 + (CAG)n Simple_repeat Simple_repeat 2 41 0 375 23 0 0 chr1 242532086 242532130 -39661534 + (TG)n Simple_repeat Simple_repeat 2 45 0 449 241 0 36 chr1 242535326 242535438 -39658226 + MIR SINE MIR 50 157 -105 * 615 307 132 4 chr1 242535425 242535653 -39658011 - MIR SINE MIR 0 262 6 213 269 37 74 chr1 242535653 242535761 -39657903 + MIR SINE MIR 158 261 -1 2169 122 0 0 chr1 242536195 242536506 -39657158 - AluSx SINE Alu -1 311 1 391 286 191 7 chr1 242537365 242537512 -39656152 - MER5A DNA MER1_type -6 183 10 231 36 0 0 chr1 242538199 242538227 -39655437 + (T)n Simple_repeat Simple_repeat 1 28 0 30 45 0 0 chr1 242538249 242538293 -39655371 + AT_rich Low_complexity Low_complexity 1 44 0 200 220 266 55 chr1 242538397 242538532 -39655132 + MIR SINE MIR 8 164 -65 451 248 81 108 chr1 242538627 242539183 -39654481 + MER34 LTR ERV1 1 541 -1 2137 135 0 0 chr1 242539314 242539625 -39654039 + AluSx SINE Alu 1 311 -1 203 161 0 0 chr1 242539628 242539659 -39654005 + polypurine Low_complexity Low_complexity 2 32 0 493 229 29 36 chr1 242540816 242540956 -39652708 - MIR SINE MIR -4 258 120 1991 146 3 0 chr1 242540958 242541267 -39652397 + AluSx SINE Alu 1 310 -2 405 329 156 27 chr1 242541316 242541541 -39652123 - MIR SINE MIR -7 255 2 1919 172 51 16 chr1 242541564 242541735 -39651929 + MLT1B LTR MaLR 5 169 -221 2017 137 0 0 chr1 242541735 242542035 -39651629 + AluSx SINE Alu 12 311 -1 1919 172 51 16 chr1 242542035 242542236 -39651428 + MLT1B LTR MaLR 169 390 0 21 71 0 0 chr1 242542595 242542637 -39651027 + AT_rich Low_complexity Low_complexity 1 42 0 280 325 8 25 chr1 242542651 242542771 -39650893 - L2 LINE L2 -19 3294 3177 264 356 27 27 chr1 242543376 242543525 -39650139 - L2 LINE L2 -1 3271 3123 1268 303 41 17 chr1 242543824 242544236 -39649428 - LTR16A LTR ERVL -13 437 16 1937 341 78 43 chr1 242544272 242544829 -39648835 - HERV16 LTR ERVL -20 5322 4786 1979 108 10 14 chr1 242544829 242545125 -39648539 + AluSc SINE Alu 1 295 -14 1937 341 78 43 chr1 242545125 242545623 -39648041 - HERV16 LTR ERVL -556 4786 4307 3353 74 20 11 chr1 242545623 242546081 -39647583 + L1PA11 LINE L1 5710 6171 -3 1937 341 78 43 chr1 242546081 242546502 -39647162 - HERV16 LTR ERVL -1035 4307 3902 2281 97 3 0 chr1 242546502 242546811 -39646853 - AluSx SINE Alu -2 310 1 1937 341 78 43 chr1 242546811 242547475 -39646189 - HERV16 LTR ERVL -1440 3902 3222 248 0 31 0 chr1 242547503 242547535 -39646129 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 1133 96 28 78 chr1 242547535 242547742 -39645922 - L1MA4A LINE L1 -11 6292 6095 3509 53 0 9 chr1 242547743 242548195 -39645469 + LTR7 LTR ERV1 1 448 -2 16847 99 35 25 chr1 242548197 242551261 -39642403 + HERVH LTR ERV1 1 2987 -4726 928 128 20 0 chr1 242551255 242551403 -39642261 + HERVH LTR ERV1 3140 3290 -4423 * 982 145 0 0 chr1 242551402 242551547 -39642117 + HERVH LTR ERV1 3500 3644 -4069 * 1236 157 40 1 chr1 242551546 242551897 -39641767 + HERVH LTR ERV1 4740 5149 -2564 1369 122 33 5 chr1 242551898 242552112 -39641552 + HERVH LTR ERV1 5600 5819 -1894 * 2614 74 45 13 chr1 242552110 242552490 -39641174 + HERVH LTR ERV1 7322 7713 0 3511 62 0 7 chr1 242552490 242552941 -39640723 + LTR7 LTR ERV1 1 448 -2 704 138 6 105 chr1 242552942 242553123 -39640541 - L1MA4A LINE L1 -204 6099 5937 307 146 0 0 chr1 242553124 242553172 -39640492 - HERV16 LTR ERVL -3857 1139 1092 355 306 74 8 chr1 242553219 242553340 -39640324 - L2 LINE L2 -1 3312 3184 1807 152 0 118 chr1 242553372 242553761 -39639903 - MER7A DNA MER2_type -5 341 1 181 179 0 26 chr1 242554103 242554142 -39639522 + L2 LINE L2 2924 2961 -311 299 312 104 13 chr1 242555427 242555581 -39638083 + L2 LINE L2 2891 3058 -214 319 260 169 26 chr1 242556721 242556875 -39636789 + MIR3 SINE MIR 4 179 -29 312 234 0 0 chr1 242557469 242557563 -39636101 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 234 183 28 42 chr1 242558680 242558751 -39634913 + T-rich Low_complexity Low_complexity 6 75 0 257 221 32 95 chr1 242558801 242558824 -39634840 + MIR3 SINE MIR 112 135 -73 2031 159 21 40 chr1 242558824 242559196 -39634468 + MLT1A1 LTR MaLR 1 365 0 257 221 32 95 chr1 242559196 242559267 -39634397 + MIR3 SINE MIR 135 200 -8 1069 206 0 5 chr1 242559418 242559617 -39634047 + AluJo SINE Alu 7 204 -108 1134 201 61 158 chr1 242559617 242559799 -39633865 + LTR8A LTR ERV1 136 334 -393 1748 158 10 10 chr1 242559799 242560102 -39633562 - AluSx SINE Alu -9 303 1 1134 201 61 158 chr1 242560102 242560576 -39633088 + LTR8A LTR ERV1 334 727 0 365 216 10 49 chr1 242561090 242561188 -39632476 - MER34 LTR ERV1 0 542 449 3420 148 7 18 chr1 242561188 242561743 -39631921 - MER34C LTR ERV1 0 585 37 1697 210 40 48 chr1 242561742 242562219 -39631445 - MER34B LTR ERV1 -88 477 5 * 995 234 94 93 chr1 242562671 242563265 -39630399 + MLT1G1 LTR MaLR 1 595 0 353 313 132 6 chr1 242563281 242563463 -39630201 - MIR SINE MIR -51 211 7 2142 95 7 0 chr1 242563539 242563833 -39629831 + AluY SINE Alu 1 296 -15 301 286 41 63 chr1 242563846 242563894 -39629770 + MIR SINE MIR 1 49 -213 2211 109 7 0 chr1 242563894 242564197 -39629467 - AluSx SINE Alu -7 305 1 301 286 41 63 chr1 242564197 242564345 -39629319 + MIR SINE MIR 49 262 0 1851 328 40 20 chr1 242564364 242565022 -39628642 + MER115 DNA AcHobo 13 683 -10 522 232 116 19 chr1 242565445 242565561 -39628103 - MLT1I LTR MaLR 0 409 273 1789 202 89 14 chr1 242565561 242565986 -39627678 - MSTB2 LTR MaLR 0 457 1 522 232 116 19 chr1 242565986 242566024 -39627640 - MLT1I LTR MaLR -136 273 240 1414 182 107 10 chr1 242566064 242566355 -39627309 + MLT1A1 LTR MaLR 1 319 -46 344 282 129 0 chr1 242566377 242566501 -39627163 - MLT1I LTR MaLR -207 202 63 1304 235 25 91 chr1 242566825 242567395 -39626269 - MER34 LTR ERV1 0 542 11 1761 180 49 3 chr1 242567569 242567897 -39625767 - MLT1A1 LTR MaLR 0 365 23 1522 213 64 13 chr1 242568082 242568554 -39625110 + MER54B LTR ERVL 99 793 0 4173 226 113 64 chr1 242568576 242569818 -39623846 - MLT1A1-int LTR MaLR -13 1722 421 948 165 46 5 chr1 242569818 242570012 -39623652 + AluJo SINE Alu 101 302 -10 2333 171 5 18 chr1 242570015 242570449 -39623215 - MLT1A1-int LTR MaLR -1306 429 2 1907 170 30 46 chr1 242570451 242570499 -39623165 - MLT1A1 LTR MaLR 0 365 318 2024 168 39 16 chr1 242570499 242570939 -39622725 - LTR7 LTR ERV1 0 450 1 1907 170 30 46 chr1 242570939 242571261 -39622403 - MLT1A1 LTR MaLR -47 318 1 294 302 24 6 chr1 242571264 242571374 -39622290 - MIR SINE MIR -64 144 35 228 287 83 0 chr1 242572441 242572550 -39621114 + MIR SINE MIR 33 150 -58 450 229 56 49 chr1 242572629 242572773 -39620891 - MIR SINE MIR -50 212 68 4655 143 14 4 chr1 242572859 242573563 -39620101 + MER50 LTR ERV1 1 711 -23 673 296 136 0 chr1 242573563 242573783 -39619881 - MIR SINE MIR 0 262 13 2269 119 3 0 chr1 242573972 242574275 -39619389 + AluSx SINE Alu 1 304 -8 192 348 130 0 chr1 242574670 242574762 -39618902 + L2 LINE L2 3154 3257 -15 367 330 51 17 chr1 242575194 242575370 -39618294 + L3 LINE CR1 1282 1463 -114 271 318 0 0 chr1 242575408 242575474 -39618190 - L2 LINE L2 -2 3311 3246 185 326 0 0 chr1 242575548 242575591 -39618073 + L3 LINE CR1 1514 1556 -21 195 114 0 0 chr1 242576574 242576609 -39617055 + (CA)n Simple_repeat Simple_repeat 2 36 0 281 306 261 15 chr1 242577201 242577335 -39616329 + MER91A DNA MER1_type 20 186 -10 333 311 74 38 chr1 242577533 242577701 -39615963 + MIR SINE MIR 20 191 -64 222 293 190 0 chr1 242578806 242578922 -39614742 - MIR SINE MIR -13 249 112 764 272 158 36 chr1 242578974 242579526 -39614138 - L2 LINE L2 0 3313 2685 209 344 47 23 chr1 242580389 242580517 -39613147 - MIR SINE MIR -58 150 20 473 328 16 21 chr1 242581150 242581339 -39612325 - MER5A DNA MER1_type 0 189 2 405 309 114 57 chr1 242581796 242582165 -39611499 - L2 LINE L2 -2578 736 347 * 660 273 42 58 chr1 242582158 242582418 -39611246 + MIR SINE MIR 7 262 0 306 156 211 33 chr1 242582477 242582567 -39611097 + MLT1J1 LTR MaLR 3 108 -338 340 358 9 0 chr1 242583129 242583238 -39610426 - L2 LINE L2 0 3272 3163 386 298 161 6 chr1 242583725 242583886 -39609778 + MER5A DNA MER1_type 4 189 0 262 236 18 0 chr1 242583955 242584010 -39609654 - L2 LINE L2 -25 3247 3192 313 250 68 0 chr1 242584396 242584484 -39609180 + MIR3 SINE MIR 65 158 -50 1001 245 101 72 chr1 242584679 242584938 -39608726 + LTR48B LTR ERV1 1 251 -393 2099 151 51 11 chr1 242584938 242585289 -39608375 + MER47A DNA MER2_type 2 366 0 1001 245 101 72 chr1 242585289 242585624 -39608040 + LTR48B LTR ERV1 251 644 0 1889 216 61 11 chr1 242586313 242586758 -39606906 + MLT1C LTR MaLR 1 467 0 213 196 0 0 chr1 242586962 242587008 -39606656 + GA-rich Low_complexity Low_complexity 2 47 0 514 277 0 0 chr1 242587305 242587417 -39606247 + MER81 DNA DNA 1 112 -2 430 304 43 14 chr1 242589376 242589514 -39604150 - MER5A DNA MER1_type -18 171 30 421 328 23 0 chr1 242589542 242589670 -39603994 - MIR3 SINE MIR -41 167 37 583 285 104 22 chr1 242589686 242589928 -39603736 - MIR SINE MIR -3 259 3 1686 195 116 31 chr1 242590398 242590842 -39602822 - MLT1F1 LTR MaLR 0 567 69 476 122 195 0 chr1 242590843 242590925 -39602739 + MER4A LTR ERV1 1 98 -566 1686 133 8 72 chr1 242590925 242591293 -39602371 + MER4A LTR ERV1 261 663 -1 475 361 23 9 chr1 242591623 242591842 -39601822 - L2 LINE L2 -202 3070 2849 378 0 0 0 chr1 242592258 242592300 -39601364 + (CA)n Simple_repeat Simple_repeat 1 42 0 1071 267 62 17 chr1 242592418 242592774 -39600890 + HAL1 LINE L1 12 383 -2124 2162 273 60 61 chr1 242593165 242593980 -39599684 + HAL1 LINE L1 373 1188 -1319 1700 156 147 6 chr1 242593980 242594300 -39599364 - MLT1A1 LTR MaLR 0 365 1 2162 273 60 61 chr1 242594300 242594556 -39599108 + HAL1 LINE L1 1188 1443 -1064 783 201 15 0 chr1 242594574 242594708 -39598956 - FLAM_A SINE Alu 0 142 7 785 208 38 47 chr1 242594708 242594920 -39598744 + HAL1 LINE L1 1492 1701 -806 1057 194 63 25 chr1 242595018 242595268 -39598396 - Charlie1a DNA MER1_type -1306 1455 1189 1750 177 3 19 chr1 242595268 242595579 -39598085 - AluJb SINE Alu -6 306 1 1057 194 63 25 chr1 242595579 242595647 -39598017 - Charlie1a DNA MER1_type -1572 1189 1125 4387 142 13 16 chr1 242595649 242596394 -39597270 - L1MA4 LINE L1 -110 7211 6469 11723 194 40 28 chr1 242596402 242596621 -39597043 - L1MA4 LINE L1 -1616 5551 5336 2623 150 43 0 chr1 242596621 242597035 -39596629 - MSTB1 LTR MaLR 0 432 1 11723 194 40 28 chr1 242597035 242597916 -39595748 - L1MA4 LINE L1 -1831 5336 4467 2422 66 0 34 chr1 242597916 242598236 -39595428 - AluY SINE Alu -2 309 1 11723 194 40 28 chr1 242598236 242602292 -39591372 - L1MA4 LINE L1 -2700 4467 11 4561 199 111 7 chr1 242602296 242603330 -39590334 - Charlie1a DNA MER1_type -313 1142 1 783 213 24 6 chr1 242603330 242603486 -39590178 + MER105 DNA DNA 46 204 0 333 145 121 36 chr1 242603834 242603917 -39589747 + MIR SINE MIR 51 140 -122 28 48 0 0 chr1 242603928 242603970 -39589694 + AT_rich Low_complexity Low_complexity 1 42 0 411 305 130 5 chr1 242606094 242606294 -39587370 - MIR SINE MIR -1 261 37 369 280 0 17 chr1 242606429 242606547 -39587117 - MIR SINE MIR -2 260 145 306 271 0 0 chr1 242606540 242606610 -39587054 + L2 LINE L2 3244 3313 0 * 231 213 0 0 chr1 242606608 242606655 -39587009 - MIR SINE MIR -115 147 101 * 1594 133 107 30 chr1 242606660 242606930 -39586734 + AluJo SINE Alu 14 304 -8 3207 33 16 0 chr1 242606930 242607293 -39586371 + L1PA4 LINE L1 5784 6152 -3 201 323 71 40 chr1 242607556 242607655 -39586009 + MIR SINE MIR 43 144 -64 713 209 44 13 chr1 242608465 242608559 -39585105 + MER63 DNA MER1_type 898 1000 -60 2322 87 0 10 chr1 242608559 242608857 -39584807 + AluSg SINE Alu 1 295 -15 713 209 44 13 chr1 242608857 242608920 -39584744 + MER63 DNA MER1_type 1000 1060 0 276 276 109 52 chr1 242608952 242609049 -39584615 + L2 LINE L2 2569 2659 -655 2637 132 81 2 chr1 242609049 242609444 -39584220 + MSTB LTR MaLR 1 426 0 276 276 109 52 chr1 242609444 242609520 -39584144 + L2 LINE L2 2659 2752 -562 601 286 79 5 chr1 242609627 242609830 -39583834 + MIR SINE MIR 30 247 -15 4824 146 33 32 chr1 242610097 242610995 -39582669 + L1MB7 LINE L1 5286 6184 0 342 0 0 0 chr1 242611393 242611431 -39582233 + (TG)n Simple_repeat Simple_repeat 2 39 0 314 336 22 22 chr1 242613246 242613380 -39580284 - MIR3 SINE MIR -62 146 13 296 48 24 0 chr1 242613656 242613698 -39579966 + (TC)n Simple_repeat Simple_repeat 1 43 0 331 320 0 0 chr1 242614294 242614369 -39579295 - MER81 DNA DNA -28 86 12 200 323 32 73 chr1 242614619 242614743 -39578921 + L2 LINE L2 2460 2578 -736 212 302 0 0 chr1 242614777 242614840 -39578824 - L2 LINE L2 -1458 1856 1794 308 349 80 17 chr1 242614967 242615142 -39578522 - MIR3 SINE MIR -22 186 1 590 318 0 0 chr1 242615336 242615506 -39578158 - MER117 DNA MER1_type -17 180 11 741 266 31 35 chr1 242616969 242617195 -39576469 + MIR SINE MIR 14 238 -24 2423 166 62 7 chr1 242617318 242617751 -39575913 + MSTB2 LTR MaLR 1 457 0 6762 208 44 53 chr1 242617751 242619412 -39574252 + MSTB2-int LTR MaLR 1 1646 -5 2540 188 39 5 chr1 242619450 242619892 -39573772 + MSTB2 LTR MaLR 1 457 0 901 276 29 41 chr1 242619996 242620311 -39573353 + MLT1I LTR MaLR 81 391 -18 191 156 0 0 chr1 242620329 242620361 -39573303 + L2 LINE L2 3241 3272 0 212 263 328 16 chr1 242620614 242620800 -39572864 - MIR SINE MIR -7 255 12 701 248 139 0 chr1 242621149 242621351 -39572313 - MER102b DNA MER1_type -27 314 85 201 171 0 0 chr1 242621851 242621886 -39571778 + A-rich Low_complexity Low_complexity 1 35 0 351 227 40 0 chr1 242622430 242622505 -39571159 + L2 LINE L2 3191 3268 -4 657 151 25 13 chr1 242622570 242622729 -39570935 + CT-rich Low_complexity Low_complexity 4 164 0 4533 129 33 25 chr1 242623068 242623666 -39569998 + L1MA4 LINE L1 5533 6140 -160 1371 176 130 0 chr1 242623666 242623928 -39569736 + AluJb SINE Alu 2 297 -15 4533 129 33 25 chr1 242623928 242624087 -39569577 + L1MA4 LINE L1 6140 6296 -4 331 314 20 0 chr1 242624154 242624256 -39569408 - L2 LINE L2 -244 3028 2925 505 316 140 35 chr1 242624460 242625332 -39568332 + L2 LINE L2 2304 3262 -10 412 286 148 23 chr1 242625504 242625721 -39567943 + MIR SINE MIR 13 256 -6 191 346 0 0 chr1 242625876 242625928 -39567736 - L2 LINE L2 -19 3294 3243 685 222 111 6 chr1 242625978 242626158 -39567506 - MIR SINE MIR -15 247 49 399 316 77 13 chr1 242626598 242626753 -39566911 - L2 LINE L2 -6 3266 3102 338 264 0 26 chr1 242628231 242628574 -39565090 + (CA)n Simple_repeat Simple_repeat 1 334 0 1711 157 10 32 chr1 242629345 242629657 -39564007 - AluJo SINE Alu -7 305 1 222 296 136 0 chr1 242629671 242629752 -39563912 + L2 LINE L2 3219 3310 -3 269 291 118 18 chr1 242629880 242629990 -39563674 - L2 LINE L2 0 3313 3193 186 306 146 45 chr1 242631374 242631532 -39562132 - MIR SINE MIR -60 148 24 1137 240 46 28 chr1 242631843 242632168 -39561496 - MLT1C LTR MaLR -31 436 106 441 136 107 68 chr1 242632205 242632308 -39561356 - MLT1C LTR MaLR -355 112 6 267 303 15 15 chr1 242632356 242632488 -39561176 + GA-rich Low_complexity Low_complexity 1 132 0 270 0 0 0 chr1 242633147 242633177 -39560487 + (TG)n Simple_repeat Simple_repeat 2 31 0 263 333 104 16 chr1 242634597 242634780 -39558884 + LTR33A LTR ERVL 23 221 -302 451 268 84 22 chr1 242634835 242635014 -39558650 + LTR33A LTR ERVL 315 504 -19 421 245 142 56 chr1 242635031 242635264 -39558400 - LTR67 LTR ERVL -42 515 263 267 304 33 105 chr1 242635292 242635473 -39558191 - LTR67 LTR ERVL -384 173 6 313 185 0 31 chr1 242636145 242636210 -39557454 + MIR SINE MIR 33 95 -113 264 193 236 75 chr1 242636237 242636398 -39557266 - MER5A DNA MER1_type -2 187 1 232 188 158 0 chr1 242638292 242638348 -39555316 + MIR SINE MIR 42 105 -103 396 309 83 20 chr1 242640578 242640782 -39552882 - MIR SINE MIR 0 262 46 2014 201 31 24 chr1 242641917 242642375 -39551289 + MLT1C LTR MaLR 7 467 0 713 254 132 36 chr1 242642424 242642917 -39550747 + L1ME4a LINE L1 5353 5892 -229 399 98 0 0 chr1 242642928 242642989 -39550675 + (TG)n Simple_repeat Simple_repeat 2 62 0 328 320 129 28 chr1 242643621 242643799 -39549865 - MIR3 SINE MIR -8 200 5 180 0 0 0 chr1 242644512 242644532 -39549132 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 542 133 20 0 chr1 242644532 242644630 -39549034 + CT-rich Low_complexity Low_complexity 1 100 0 1566 176 33 23 chr1 242644634 242644941 -39548723 - AluJo SINE Alu -2 310 1 1205 262 119 22 chr1 242645611 242646063 -39547601 - MLT1G1 LTR MaLR -23 572 1 1117 76 0 0 chr1 242646070 242646214 -39547450 + AluSg/x SINE Alu 152 295 -14 435 330 52 78 chr1 242646327 242646869 -39546795 - L3 LINE CR1 -233 1344 817 463 312 76 0 chr1 242647511 242647668 -39545996 + MIR SINE MIR 10 178 -84 1290 209 35 4 chr1 242647693 242647952 -39545712 - MER58 DNA MER1_type -74 267 1 249 343 37 0 chr1 242648077 242648185 -39545479 - L2 LINE L2 -218 3054 2943 667 308 54 4 chr1 242648193 242648433 -39545231 - MIR SINE MIR 0 262 11 414 299 0 39 chr1 242649521 242649648 -39544016 + MIR SINE MIR 16 137 -71 305 360 35 9 chr1 242649668 242649782 -39543882 - L2 LINE L2 -35 3237 3121 437 274 62 67 chr1 242649825 242650004 -39543660 - MER5B DNA MER1_type 0 178 1 433 267 167 0 chr1 242650579 242650729 -39542935 + MER96 DNA MER1_type 1 175 0 378 279 131 87 chr1 242650864 242651046 -39542618 - L2 LINE L2 -80 3192 3019 2518 119 0 3 chr1 242651046 242651408 -39542256 - MER46B DNA MER2_type 0 236 1 378 279 131 87 chr1 242651408 242651799 -39541865 - L2 LINE L2 -253 3019 2587 414 301 75 82 chr1 242652351 242652733 -39540931 + L2 LINE L2 2551 2934 -338 1604 174 19 9 chr1 242652733 242653054 -39540610 - MER33 DNA MER1_type 0 324 1 414 301 75 82 chr1 242653054 242653177 -39540487 + L2 LINE L2 2934 3056 -216 1225 182 154 9 chr1 242653177 242653496 -39540168 - MLT1A1 LTR MaLR 0 365 1 414 301 75 82 chr1 242653496 242653686 -39539978 + L2 LINE L2 3056 3271 -1 201 234 0 0 chr1 242653959 242654023 -39539641 + (CA)n Simple_repeat Simple_repeat 1 64 0 260 219 41 14 chr1 242654039 242654112 -39539552 - MIR SINE MIR -86 122 48 186 200 25 0 chr1 242654555 242654595 -39539069 + MIR SINE MIR 81 121 -87 390 315 0 6 chr1 242654671 242654852 -39538812 + (TG)n Simple_repeat Simple_repeat 1 180 0 7040 210 78 47 chr1 242654975 242656538 -39537126 + Charlie2a DNA MER1_type 165 1827 -1035 2132 95 13 13 chr1 242656538 242656842 -39536822 - AluSc SINE Alu -5 304 1 7040 210 78 47 chr1 242656842 242657643 -39536021 + Charlie2a DNA MER1_type 1827 2602 -260 818 145 0 28 chr1 242657644 242657789 -39535875 + FLAM_C SINE Alu 1 141 -2 798 231 86 12 chr1 242657798 242658053 -39535611 + Charlie2a DNA MER1_type 2589 2862 0 2175 103 0 3 chr1 242658155 242658455 -39535209 - AluSg SINE Alu -11 299 1 232 289 0 0 chr1 242658651 242658696 -39534968 - L2 LINE L2 -19 3253 3209 1930 151 0 0 chr1 242658740 242659044 -39534620 + AluJb SINE Alu 3 306 -6 344 311 192 0 chr1 242659072 242659223 -39534441 - MIR SINE MIR -17 245 66 180 0 0 0 chr1 242660364 242660384 -39533280 + (TTG)n Simple_repeat Simple_repeat 2 21 0 193 319 29 14 chr1 242661196 242661265 -39532399 + L2 LINE L2 3117 3186 -86 210 236 0 0 chr1 242661301 242661356 -39532308 + GA-rich Low_complexity Low_complexity 2 56 0 208 311 14 0 chr1 242661983 242662057 -39531607 + GA-rich Low_complexity Low_complexity 3 77 0 2091 124 3 0 chr1 242662433 242662732 -39530932 - AluSx SINE Alu -6 306 7 207 0 0 0 chr1 242662992 242663015 -39530649 + (CCTG)n Simple_repeat Simple_repeat 2 24 0 415 45 30 0 chr1 242663495 242663561 -39530103 + (TC)n Simple_repeat Simple_repeat 1 68 0 268 111 44 22 chr1 242663575 242663620 -39530044 + MER5A DNA MER1_type 10 55 -134 185 296 87 52 chr1 242664536 242664651 -39529013 + L2 LINE L2 3096 3214 -58 283 247 0 65 chr1 242665506 242665583 -39528081 + MIR SINE MIR 79 150 -112 2224 151 5 27 chr1 242665767 242666139 -39527525 - THE1B LTR MaLR 0 364 1 536 210 132 12 chr1 242666331 242666498 -39527166 - MER5A DNA MER1_type -2 187 1 729 232 62 111 chr1 242666517 242666858 -39526806 - MLT1I LTR MaLR -39 370 47 1696 244 37 16 chr1 242666890 242667324 -39526340 + LTR47B LTR ERVL 1 443 0 225 0 0 0 chr1 242667445 242667470 -39526194 + (ATG)n Simple_repeat Simple_repeat 3 27 0 1141 236 17 0 chr1 242667475 242667716 -39525948 - MIR SINE MIR -10 252 8 279 0 0 0 chr1 242668921 242668952 -39524712 + (CA)n Simple_repeat Simple_repeat 1 31 0 2853 142 8 23 chr1 242669562 242670034 -39523630 - MLT1C LTR MaLR 0 467 3 491 0 17 0 chr1 242670140 242670199 -39523465 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 1398 121 5 0 chr1 242670202 242670400 -39523264 - AluSg/x SINE Alu -31 279 81 230 344 130 25 chr1 242670460 242670745 -39522919 - L2 LINE L2 -640 2674 2360 182 262 0 0 chr1 242670836 242670878 -39522786 - L2 LINE L2 -956 2358 2317 191 300 0 0 chr1 242670891 242670931 -39522733 - L2 LINE L2 -94 3219 3180 281 250 60 69 chr1 242670982 242671098 -39522566 + MER46C DNA MER2_type 5 119 -219 333 0 0 0 chr1 242671423 242671460 -39522204 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1666 170 7 3 chr1 242671462 242671751 -39521913 - AluSx SINE Alu -22 290 1 2247 70 10 13 chr1 242672010 242672322 -39521342 + AluY SINE Alu 1 311 0 285 379 38 0 chr1 242673209 242673341 -39520323 - L2 LINE L2 -218 3054 2918 230 264 200 0 chr1 242675086 242675196 -39518468 - MIR SINE MIR -25 237 106 318 258 244 10 chr1 242676036 242676177 -39517487 - MIR SINE MIR -42 166 30 2333 78 75 29 chr1 242677153 242677501 -39516163 + THE1B LTR MaLR 1 364 0 266 332 47 32 chr1 242678186 242678396 -39515268 + L2 LINE L2 2793 3010 -262 305 328 44 59 chr1 242679678 242679882 -39513782 + L3 LINE CR1 1336 1536 -41 2015 182 43 3 chr1 242680612 242680963 -39512701 - MLT1A1 LTR MaLR 0 365 1 844 267 61 4 chr1 242680974 242681221 -39512443 - MIR SINE MIR -1 261 1 204 135 0 0 chr1 242682401 242682438 -39511226 + (CA)n Simple_repeat Simple_repeat 1 37 0 290 321 56 41 chr1 242683858 242684054 -39509610 - MIR SINE MIR -56 206 8 431 286 99 29 chr1 242684396 242684567 -39509097 + MIR SINE MIR 41 223 -39 200 225 0 0 chr1 242685660 242685700 -39507964 - MIR SINE MIR -109 153 114 466 140 129 0 chr1 242686376 242686469 -39507195 + MER103 DNA DNA 17 121 -45 310 319 28 57 chr1 242686526 242686667 -39506997 - MIR3 SINE MIR -27 181 45 726 60 0 0 chr1 242687258 242687358 -39506306 + (GATTG)n Simple_repeat Simple_repeat 3 102 0 377 304 100 32 chr1 242687941 242688191 -39505473 - L2 LINE L2 -5 3308 3042 268 346 0 20 chr1 242688534 242688635 -39505029 - L2 LINE L2 0 3272 3174 332 241 49 108 chr1 242690894 242691003 -39502661 + MER63A DNA MER1_type 7 100 -1588 1715 190 10 3 chr1 242691003 242691303 -39502361 + AluJo SINE Alu 1 302 -10 332 241 49 108 chr1 242691303 242691396 -39502268 + MER63A DNA MER1_type 100 197 -13 22 0 0 0 chr1 242691929 242691951 -39501713 + AT_rich Low_complexity Low_complexity 1 22 0 571 244 114 42 chr1 242691981 242692174 -39501490 - MIR SINE MIR -55 207 1 807 293 136 28 chr1 242692468 242693316 -39500348 + L2 LINE L2 2370 3313 0 942 86 0 0 chr1 242694236 242694352 -39499312 + AluSc SINE Alu 157 272 -37 180 0 0 0 chr1 242694356 242694376 -39499288 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 360 267 107 42 chr1 242695467 242695589 -39498075 - L1MC4 LINE L1 0 8042 7929 428 0 19 0 chr1 242695589 242695641 -39498023 + (CA)n Simple_repeat Simple_repeat 1 53 0 360 267 107 42 chr1 242695641 242695780 -39497884 - L1MC4 LINE L1 -113 7929 7764 203 259 86 52 chr1 242695794 242695910 -39497754 - MER5B DNA MER1_type -35 143 24 472 263 31 31 chr1 242696094 242696254 -39497410 - MER91B DNA MER1_type -30 160 1 234 194 39 155 chr1 242696309 242696412 -39497252 + L2 LINE L2 3180 3270 -2 251 250 0 0 chr1 242696508 242696560 -39497104 + L2 LINE L2 3262 3313 0 676 287 100 13 chr1 242696837 242697067 -39496597 - MIR SINE MIR 0 262 13 226 152 0 0 chr1 242697706 242697752 -39495912 - L1MC4a LINE L1 0 7808 7763 708 204 0 66 chr1 242697761 242697862 -39495802 + FLAM_C SINE Alu 2 91 -221 2215 129 21 47 chr1 242697862 242698243 -39495421 - THE1C LTR MaLR -4 371 1 708 204 0 66 chr1 242698243 242698293 -39495371 + FLAM_C SINE Alu 91 143 -169 665 294 85 61 chr1 242698294 242698880 -39494784 - L1MC4 LINE L1 -40 8002 7403 180 318 20 88 chr1 242699489 242699637 -39494027 - L2 LINE L2 -13 3300 3163 579 370 71 32 chr1 242699916 242700481 -39493183 - L2 LINE L2 -464 2850 2264 195 291 233 0 chr1 242700512 242700598 -39493066 + L2 LINE L2 3208 3313 0 471 332 118 4 chr1 242700699 242700928 -39492736 - MIR SINE MIR -4 258 4 1243 179 5 18 chr1 242701071 242701289 -39492375 - MER20 DNA MER1_type -2 217 3 1970 129 93 6 chr1 242701432 242701764 -39491900 + MER46B DNA MER2_type 1 236 0 207 317 73 12 chr1 242702715 242702797 -39490867 + L3 LINE CR1 1332 1418 -159 261 183 0 0 chr1 242702964 242703024 -39490640 + (CA)n Simple_repeat Simple_repeat 2 61 0 753 328 94 5 chr1 242703556 242703937 -39489727 + L3 LINE CR1 1136 1550 -27 262 241 35 0 chr1 242704690 242704748 -39488916 + MIR3 SINE MIR 133 192 -16 264 246 0 16 chr1 242704886 242704947 -39488717 - L2 LINE L2 -8 3305 3246 221 179 18 54 chr1 242706353 242706409 -39487255 - L2 LINE L2 -87 3185 3132 192 275 0 0 chr1 242706633 242706673 -39486991 - L2 LINE L2 -80 3192 3153 267 103 0 0 chr1 242707011 242707050 -39486614 + (CA)n Simple_repeat Simple_repeat 2 40 0 423 284 92 50 chr1 242707470 242707688 -39485976 - L2 LINE L2 0 3313 3087 237 377 92 35 chr1 242709398 242709820 -39483844 + L2 LINE L2 2806 3251 -21 1171 217 5 5 chr1 242709971 242710188 -39483476 - MER58A DNA MER1_type -3 221 5 273 289 68 2 chr1 242711288 242711397 -39482267 + MIR SINE MIR 35 154 -54 282 233 47 15 chr1 242713023 242713153 -39480511 - MIR SINE MIR -27 235 7 509 250 8 24 chr1 242713158 242713282 -39480382 + MIR SINE MIR 46 167 -95 184 243 71 71 chr1 242713343 242713413 -39480251 + MIR SINE MIR 182 251 -11 338 303 64 18 chr1 242713483 242713592 -39480072 + MIR3 SINE MIR 41 154 -54 277 249 107 83 chr1 242715993 242716162 -39477502 + MIR3 SINE MIR 11 183 -25 1029 231 46 40 chr1 242718067 242718370 -39475294 + L2 LINE L2 3009 3313 0 278 298 96 0 chr1 242718386 242718480 -39475184 + MIR SINE MIR 51 153 -109 590 332 84 40 chr1 242719111 242719457 -39474207 - L2 LINE L2 -10 3262 2902 845 270 42 0 chr1 242719526 242719741 -39473923 + MIR SINE MIR 36 259 -3 330 250 133 17 chr1 242720538 242720658 -39473006 - MIR SINE MIR -46 216 83 774 281 203 13 chr1 242720742 242721317 -39472347 - L2 LINE L2 0 3313 2625 233 246 164 0 chr1 242721786 242721847 -39471817 + MIR SINE MIR 76 146 -116 266 357 91 0 chr1 242723668 242723811 -39469853 + L2 LINE L2 3116 3271 -1 779 77 0 17 chr1 242723819 242723936 -39469728 + (GGAA)n Simple_repeat Simple_repeat 4 118 0 371 277 126 58 chr1 242724305 242724511 -39469153 + MIR SINE MIR 18 237 -25 225 184 0 0 chr1 242725127 242725165 -39468499 - L2 LINE L2 -12 3260 3223 * 624 252 13 7 chr1 242725131 242725282 -39468382 - MIR SINE MIR -10 252 101 388 261 72 26 chr1 242725257 242725410 -39468254 - MIR3 SINE MIR -25 183 24 * 753 268 28 59 chr1 242727175 242727354 -39466310 + MIR SINE MIR 17 200 -62 2197 94 14 0 chr1 242727354 242727642 -39466022 + AluSq SINE Alu 1 292 -21 186 43 0 0 chr1 242727642 242727665 -39465999 + (GA)n Simple_repeat Simple_repeat 2 24 0 753 268 28 59 chr1 242727665 242727738 -39465926 + MIR SINE MIR 198 262 0 639 303 53 5 chr1 242727734 242727942 -39465722 - MIR SINE MIR -9 253 36 * 310 248 154 17 chr1 242728158 242728275 -39465389 - L2 LINE L2 -3 3269 3137 208 118 0 29 chr1 242728477 242728511 -39465153 - MIR SINE MIR -83 125 93 275 291 29 39 chr1 242728980 242729083 -39464581 - MIR SINE MIR -73 135 34 182 237 151 75 chr1 242729364 242729457 -39464207 + L3b LINE CR1 1278 1377 -206 280 340 56 6 chr1 242730258 242730420 -39463244 + L2 LINE L2 2883 3052 -220 570 253 108 13 chr1 242730435 242730593 -39463071 + MER5B DNA MER1_type 4 176 -2 222 352 31 62 chr1 242730923 242731051 -39462613 - MER5A DNA MER1_type -2 187 64 397 243 209 7 chr1 242731114 242731262 -39462402 + MER5B DNA MER1_type 1 178 0 440 18 18 0 chr1 242733856 242733913 -39459751 + (TC)n Simple_repeat Simple_repeat 1 58 0 229 236 0 18 chr1 242734092 242734147 -39459517 + L2 LINE L2 2183 2236 -1078 2130 127 0 0 chr1 242734322 242734641 -39459023 - AluSx SINE Alu 0 319 1 344 76 8 0 chr1 242734646 242734698 -39458966 - AluSg/x SINE Alu -175 125 81 281 315 91 37 chr1 242734704 242735117 -39458547 + L2 LINE L2 2698 3187 -126 784 206 32 60 chr1 242735135 242735353 -39458311 - MER20 DNA MER1_type 0 219 8 259 236 236 0 chr1 242735379 242735451 -39458213 + L2 LINE L2 3222 3310 -3 347 372 80 39 chr1 242735620 242735956 -39457708 + L2 LINE L2 2921 3270 -2 590 281 59 87 chr1 242736013 242736507 -39457157 + MARNA DNA Mariner 75 554 -32 209 358 25 0 chr1 242737937 242738018 -39455646 - MIR SINE MIR -6 256 174 200 295 16 33 chr1 242738101 242738162 -39455502 + MIR3 SINE MIR 100 159 -49 571 233 33 0 chr1 242738166 242738286 -39455378 - L2 LINE L2 -1 3312 3189 198 94 62 0 chr1 242738292 242738324 -39455340 + MIR3 SINE MIR 157 190 -18 393 176 0 0 chr1 242738548 242738622 -39455042 + (CA)n Simple_repeat Simple_repeat 1 74 0 2452 95 0 0 chr1 242739210 242739516 -39454148 + AluSg SINE Alu 5 310 0 735 198 22 124 chr1 242739525 242739738 -39453926 + L2 LINE L2 3069 3250 -63 2501 67 0 16 chr1 242739738 242740053 -39453611 + AluY SINE Alu 1 310 -1 735 198 22 124 chr1 242740053 242740112 -39453552 + L2 LINE L2 3250 3313 0 425 296 45 0 chr1 242740248 242740380 -39453284 - MIR SINE MIR -28 234 97 510 219 111 65 chr1 242741032 242741259 -39452405 + L1ME4a LINE L1 5779 5994 -127 411 156 39 0 chr1 242741259 242741336 -39452328 + MER116 DNA Mariner 1 80 0 510 219 111 65 chr1 242741336 242741381 -39452283 + L1ME4a LINE L1 5994 6035 -86 2116 121 0 25 chr1 242741381 242741718 -39451946 - AluSx SINE Alu 0 312 1 510 219 111 65 chr1 242741718 242741768 -39451896 + L1ME4a LINE L1 6035 6117 -4 524 267 44 80 chr1 242743312 242743537 -39450127 - MIR SINE MIR -26 236 20 2223 122 3 7 chr1 242744373 242744677 -39448987 + AluSx SINE Alu 1 303 -9 365 366 12 19 chr1 242745291 242745452 -39448212 - MIR3 SINE MIR -20 188 29 201 244 176 50 chr1 242745690 242745809 -39447855 - MIR SINE MIR -17 245 112 490 275 22 7 chr1 242747159 242747297 -39446367 - MIR3 SINE MIR -12 196 57 41 0 0 0 chr1 242747786 242747827 -39445837 + AT_rich Low_complexity Low_complexity 1 41 0 232 354 19 51 chr1 242748687 242748845 -39444819 + L2 LINE L2 3158 3310 -3 220 333 59 10 chr1 242750085 242750187 -39443477 + MIR SINE MIR 43 149 -59 281 281 137 14 chr1 242750869 242751015 -39442649 - MIR3 SINE MIR -38 170 7 1060 222 191 80 chr1 242753615 242754384 -39439280 + L2 LINE L2 2435 3313 0 798 267 116 4 chr1 242755284 242755509 -39438155 - MIR SINE MIR -4 258 9 2273 118 0 0 chr1 242755627 242755932 -39437732 + AluSx SINE Alu 1 305 -7 297 283 133 0 chr1 242757165 242757256 -39436408 + MIR3 SINE MIR 61 173 -35 458 204 102 42 chr1 242757256 242757423 -39436241 + MER5B DNA MER1_type 2 178 0 297 283 133 0 chr1 242757423 242757451 -39436213 + MIR3 SINE MIR 173 196 -12 578 296 126 0 chr1 242757467 242757666 -39435998 + MIR SINE MIR 4 227 -35 2568 77 0 0 chr1 242758174 242758485 -39435179 + AluY SINE Alu 1 311 0 214 171 0 0 chr1 242759163 242759198 -39434466 + GA-rich Low_complexity Low_complexity 1 35 0 513 183 165 18 chr1 242759547 242759711 -39433953 - MER53 DNA DNA 0 189 2 249 408 10 0 chr1 242759740 242759838 -39433826 - L3 LINE CR1 -405 1172 1074 214 286 117 76 chr1 242760079 242760250 -39433414 - MIR SINE MIR -10 252 75 309 254 17 24 chr1 242760253 242760395 -39433269 - MLT1I LTR MaLR -14 424 296 2288 107 3 0 chr1 242760676 242760974 -39432690 - AluSx SINE Alu -13 299 1 586 234 9 0 chr1 242761327 242761438 -39432226 - MER81 DNA DNA -1 113 2 445 272 27 89 chr1 242761635 242761892 -39431772 - L3 LINE CR1 -554 1023 783 210 171 29 0 chr1 242762412 242762447 -39431217 + L2 LINE L2 3257 3292 -21 362 291 73 33 chr1 242763474 242763625 -39430039 - L2 LINE L2 -2 3311 3155 198 0 0 0 chr1 242764211 242764233 -39429431 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 531 319 79 38 chr1 242764241 242764507 -39429157 - L2 LINE L2 -29 3284 3008 377 300 75 12 chr1 242764786 242764946 -39428718 - L2 LINE L2 -299 2973 2804 388 372 35 6 chr1 242764950 242765122 -39428542 - MER5B DNA MER1_type -1 177 1 844 263 59 13 chr1 242765152 242765388 -39428276 + MIR SINE MIR 1 247 -15 893 319 63 26 chr1 242765423 242765760 -39427904 - L2 LINE L2 -746 2568 2214 936 184 44 29 chr1 242765760 242765966 -39427698 - MER3 DNA MER1_type 0 209 1 893 319 63 26 chr1 242765966 242766010 -39427654 - L2 LINE L2 -1100 2214 2173 395 245 28 19 chr1 242766039 242766145 -39427519 - MER5B DNA MER1_type -71 107 1 437 326 175 21 chr1 242766229 242766664 -39427000 + L2 LINE L2 2257 2758 -556 422 353 98 18 chr1 242766705 242767186 -39426478 - L2 LINE L2 -19 3253 2736 1195 301 113 47 chr1 242767216 242767454 -39426210 - L2 LINE L2 -562 2752 2531 2506 55 0 3 chr1 242767454 242767745 -39425919 - AluY SINE Alu -10 301 12 1195 301 113 47 chr1 242767745 242768234 -39425430 - L2 LINE L2 -783 2531 1977 217 310 75 95 chr1 242768280 242768717 -39424947 + L2 LINE L2 2808 3235 -78 2196 125 0 0 chr1 242768717 242769006 -39424658 - AluSc SINE Alu -14 295 7 217 310 75 95 chr1 242769006 242769075 -39424589 + L2 LINE L2 3235 3304 -9 578 235 14 142 chr1 242769183 242769464 -39424200 - MIR SINE MIR 0 262 18 212 0 36 0 chr1 242770632 242770660 -39423004 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 700 285 85 72 chr1 242770699 242771195 -39422469 - L2 LINE L2 0 3313 2226 232 203 17 0 chr1 242771394 242771453 -39422211 + (TTA)n Simple_repeat Simple_repeat 2 61 0 325 272 0 97 chr1 242771758 242771861 -39421803 - MER81 DNA DNA -21 93 1 375 23 0 0 chr1 242773606 242773650 -39420014 + (TC)n Simple_repeat Simple_repeat 1 44 0 261 0 0 0 chr1 242773649 242773678 -39419986 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 221 171 24 0 chr1 242774213 242774254 -39419410 + CT-rich Low_complexity Low_complexity 1 42 0 2069 88 4 4 chr1 242777003 242777264 -39416400 - AluSc SINE Alu -25 284 24 215 273 157 25 chr1 242777537 242777658 -39416006 + L2 LINE L2 3163 3299 -14 894 209 30 20 chr1 242777706 242777907 -39415757 + MER20 DNA MER1_type 17 219 0 774 300 89 18 chr1 242778032 242778312 -39415352 + L3 LINE CR1 620 919 -658 5824 131 37 32 chr1 242778316 242779627 -39414037 - L1MA6 LINE L1 -4 6296 4977 2088 163 15 6 chr1 242779630 242779968 -39413696 - MER7A DNA MER2_type -5 341 3 1872 142 0 0 chr1 242779971 242780259 -39413405 - L1MA6 LINE L1 -1169 4977 4690 348 285 69 62 chr1 242780259 242780403 -39413261 + L3 LINE CR1 907 1051 -526 577 230 85 81 chr1 242780433 242780668 -39412996 + MIR SINE MIR 27 262 0 829 319 136 19 chr1 242780678 242781111 -39412553 + L3 LINE CR1 1094 1577 0 276 246 0 15 chr1 242783313 242783378 -39410286 + MER89-int LTR ERV1 1228 1291 -5510 463 273 9 9 chr1 242784183 242784293 -39409371 + L2 LINE L2 3162 3271 -1 269 277 21 11 chr1 242785107 242785201 -39408463 + GA-rich Low_complexity Low_complexity 3 97 0 187 185 19 56 chr1 242785273 242785327 -39408337 + L2 LINE L2 3262 3313 0 234 244 0 0 chr1 242785522 242785567 -39408097 - L1MD3 LINE L1 -40 7955 7911 530 319 0 12 chr1 242786446 242786606 -39407058 - MIR3 SINE MIR -17 191 34 500 328 79 61 chr1 242787036 242787494 -39406170 + L2 LINE L2 2806 3271 -1 451 237 49 103 chr1 242787659 242787883 -39405781 + HAL1 LINE L1 8 219 -2288 2924 260 91 82 chr1 242787959 242788397 -39405267 + HAL1 LINE L1 426 858 -1649 2273 182 75 0 chr1 242788397 242788799 -39404865 + MSTB1 LTR MaLR 1 432 0 2924 260 91 82 chr1 242788799 242788980 -39404684 + HAL1 LINE L1 858 1036 -1471 1600 178 38 3 chr1 242788980 242789273 -39404391 + AluJo SINE Alu 9 311 -1 2924 260 91 82 chr1 242789273 242789353 -39404311 + HAL1 LINE L1 1036 1114 -1393 2217 111 0 0 chr1 242789353 242789642 -39404022 + AluSq SINE Alu 1 289 -24 2924 260 91 82 chr1 242789642 242791002 -39402662 + HAL1 LINE L1 1114 2507 0 22 0 0 0 chr1 242791007 242791029 -39402635 + AT_rich Low_complexity Low_complexity 1 22 0 1884 150 78 63 chr1 242791210 242791686 -39401978 - MER31A LTR ERV1 0 543 1 303 268 118 31 chr1 242791686 242791813 -39401851 - MER5B DNA MER1_type -40 138 1 342 304 234 12 chr1 242792774 242793205 -39400459 + L2 LINE L2 1826 2352 -962 * 508 334 102 64 chr1 242793186 242793578 -39400086 - L2 LINE L2 0 3272 2866 389 316 148 20 chr1 242793777 242793855 -39399809 - L2 LINE L2 -642 2672 2605 1981 120 64 67 chr1 242793855 242794230 -39399434 + THE1C LTR MaLR 2 375 0 389 316 148 20 chr1 242794230 242794395 -39399269 - L2 LINE L2 -709 2605 2398 2785 195 57 19 chr1 242794406 242794467 -39399197 + L1MB7 LINE L1 5539 5596 -588 2305 92 7 0 chr1 242794467 242794760 -39398904 + AluSc SINE Alu 1 295 -14 2785 195 57 19 chr1 242794760 242795312 -39398352 + L1MB7 LINE L1 5596 6175 -9 554 323 66 35 chr1 242795325 242795672 -39397992 - L2 LINE L2 -958 2356 1999 181 388 0 0 chr1 242796121 242796219 -39397445 + L2 LINE L2 2872 2969 -303 268 211 0 0 chr1 242796748 242796805 -39396859 - MER53 DNA DNA -7 182 126 717 191 15 8 chr1 242796836 242796967 -39396697 - FLAM_C SINE Alu 0 133 2 587 50 10 30 chr1 242797058 242797157 -39396507 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 255 176 103 0 chr1 242797173 242797241 -39396423 + MER53 DNA DNA 108 182 -7 * 533 99 0 0 chr1 242797224 242797295 -39396369 - MER53 DNA DNA -118 71 1 2413 97 72 0 chr1 242798205 242798536 -39395128 - THE1A LTR MaLR 0 355 1 12144 92 17 3 chr1 242798536 242800095 -39393569 - THE1A-int LTR MaLR 0 1580 1 2994 76 0 0 chr1 242800096 242800450 -39393214 - THE1A LTR MaLR -1 354 1 191 330 55 9 chr1 242801274 242801383 -39392281 - L2 LINE L2 -20 3293 3180 723 185 258 0 chr1 242801434 242801612 -39392052 + Charlie1 DNA MER1_type 10 233 -2528 637 168 7 77 chr1 242801609 242801752 -39391912 + Charlie1 DNA MER1_type 2626 2758 -3 * 23 0 0 0 chr1 242802322 242802345 -39391319 + AT_rich Low_complexity Low_complexity 1 23 0 180 222 0 111 chr1 242802493 242802565 -39391099 + MIR SINE MIR 81 144 -64 180 0 0 0 chr1 242804311 242804331 -39389333 + (A)n Simple_repeat Simple_repeat 1 20 0 631 251 124 31 chr1 242808404 242808663 -39385001 - MLT1J LTR MaLR -6 505 223 400 258 167 0 chr1 242808690 242808810 -39384854 - MLT1J LTR MaLR -371 140 1 333 0 0 0 chr1 242808876 242808913 -39384751 + (CA)n Simple_repeat Simple_repeat 2 38 0 1171 194 82 71 chr1 242811224 242811564 -39382100 - MER2 DNA MER2_type 0 344 1 556 283 23 37 chr1 242811660 242811707 -39381957 + L1ME4a LINE L1 5569 5615 -528 2167 109 0 3 chr1 242811707 242812000 -39381664 + AluSg SINE Alu 1 292 -18 556 283 23 37 chr1 242812000 242812176 -39381488 + L1ME4a LINE L1 5615 5791 -352 350 233 33 67 chr1 242812215 242812365 -39381299 + L1ME4a LINE L1 5974 6118 -3 2011 166 21 6 chr1 242812503 242812835 -39380829 + MER2 DNA MER2_type 8 344 -1 375 271 39 39 chr1 242812969 242813098 -39380566 - L2 LINE L2 0 3313 3185 357 263 68 8 chr1 242813170 242813303 -39380361 + HsTC2 DNA Tc2 1760 1900 0 183 333 148 0 chr1 242813319 242813427 -39380237 + L2 LINE L2 3149 3272 0 349 304 0 0 chr1 242813544 242813646 -39380018 - MER20 DNA MER1_type 0 219 118 2921 191 118 38 chr1 242814065 242814834 -39378830 + L1MC4 LINE L1 6458 7288 -754 246 61 0 82 chr1 242814841 242814890 -39378774 + L1MB3 LINE L1 5289 5333 -850 * 7386 151 31 15 chr1 242814884 242816512 -39377152 + L1MA4A LINE L1 3999 5817 -486 2122 117 0 49 chr1 242816512 242816837 -39376827 + AluSx SINE Alu 1 309 -3 7386 151 31 15 chr1 242816837 242817331 -39376333 + L1MA4A LINE L1 5817 6302 -1 4510 135 9 80 chr1 242817334 242817692 -39375972 + L1MB3 LINE L1 5321 5703 -480 2207 101 54 0 chr1 242817692 242817988 -39375676 + AluSx SINE Alu 1 312 0 4510 135 9 80 chr1 242817988 242818515 -39375149 + L1MB3 LINE L1 5703 6143 -40 3046 73 23 5 chr1 242818510 242818907 -39374757 - L1PA6 LINE L1 -164 5990 5587 * 1154 81 0 14 chr1 242818907 242819044 -39374620 + L1PA6 LINE L1 6002 6147 -7 2100 196 43 29 chr1 242819064 242819323 -39374341 + L1MC4 LINE L1 7277 7548 -494 508 264 98 26 chr1 242819323 242819516 -39374148 + MER63A DNA MER1_type 1 207 -3 2100 196 43 29 chr1 242819516 242819741 -39373923 + L1MC4 LINE L1 7548 7768 -274 1768 187 65 40 chr1 242819747 242820196 -39373468 + MLT1C LTR MaLR 6 465 -2 533 157 350 83 chr1 242820196 242820413 -39373251 + L1MC4 LINE L1 7768 8042 0 245 351 40 17 chr1 242821284 242821458 -39372206 + L2 LINE L2 2038 2215 -1099 215 298 0 0 chr1 242823024 242823081 -39370583 - MER91 DNA MER1_type -72 124 68 721 222 65 112 chr1 242823854 242824192 -39369472 + MER46C DNA MER2_type 3 324 -14 1950 90 12 0 chr1 242824988 242825243 -39368421 + AluSc SINE Alu 50 307 -2 1263 178 104 52 chr1 242825259 242825546 -39368118 + AluJo SINE Alu 1 302 -10 1118 252 78 38 chr1 242825891 242826340 -39367324 + MLT1C LTR MaLR 1 467 0 295 333 0 40 chr1 242826548 242826647 -39367017 + MIR SINE MIR 3 97 -165 188 135 81 0 chr1 242826667 242826704 -39366960 + MIR SINE MIR 223 262 0 254 288 14 0 chr1 242827300 242827373 -39366291 - MIR SINE MIR 0 262 189 374 301 0 0 chr1 242827400 242827483 -39366181 - MIR SINE MIR -178 84 2 604 275 159 106 chr1 242827505 242827901 -39365763 - MLT1L LTR MaLR -51 563 121 959 196 64 107 chr1 242827940 242828015 -39365649 - MLT1J LTR MaLR -2 509 432 2122 139 0 0 chr1 242828015 242828302 -39365362 + AluSx SINE Alu 1 287 -25 279 0 0 0 chr1 242828302 242828333 -39365331 + (CA)n Simple_repeat Simple_repeat 2 32 0 959 196 64 107 chr1 242828333 242828583 -39365081 - MLT1J LTR MaLR -77 434 197 3229 153 11 2 chr1 242828588 242829125 -39364539 + L1 LINE L1 3656 4197 -1949 455 262 72 102 chr1 242829165 242829569 -39364095 - MLT1J LTR MaLR -102 409 18 250 263 70 9 chr1 242829586 242829700 -39363964 - L1P LINE L1 -1147 4999 4879 2189 271 54 20 chr1 242829736 242830480 -39363184 + L1ME LINE L1 6 774 -5296 2142 118 28 0 chr1 242830657 242830945 -39362719 - AluSx SINE Alu -16 296 1 2119 39 16 0 chr1 242831537 242831794 -39361870 - L1PA5 LINE L1 0 6154 5894 1736 235 55 19 chr1 242832120 242832596 -39361068 + L1MC4a LINE L1 7298 7790 -18 223 250 0 16 chr1 242832667 242832731 -39360933 + GA-rich Low_complexity Low_complexity 2 64 0 31 76 0 0 chr1 242833710 242833776 -39359888 + AT_rich Low_complexity Low_complexity 1 66 0 204 244 0 0 chr1 242834226 242834271 -39359393 - L2 LINE L2 0 3313 3269 982 276 100 45 chr1 242834330 242834589 -39359075 - LTR33 LTR ERVL 0 521 278 2238 111 0 0 chr1 242834589 242834877 -39358787 + AluSc SINE Alu 1 288 -21 982 276 100 45 chr1 242834877 242835109 -39358555 - LTR33 LTR ERVL -243 278 3 1435 219 88 3 chr1 242835678 242836122 -39357542 + MER110A LTR ERV1 1 491 0 1851 157 0 27 chr1 242836572 242836915 -39356749 - AluJo SINE Alu 0 335 1 400 254 60 79 chr1 242837142 242837394 -39356270 + L1MC4a LINE L1 5698 5944 -177 1378 246 55 33 chr1 242837538 242837993 -39355671 + MLT1C LTR MaLR 1 465 -2 584 253 64 34 chr1 242838222 242838455 -39355209 + L2 LINE L2 2691 2930 -384 5724 92 12 18 chr1 242838516 242838597 -39355067 + L1PB1 LINE L1 5323 5403 -748 2279 120 3 0 chr1 242838597 242838905 -39354759 + AluSx SINE Alu 1 309 -3 5724 92 12 18 chr1 242838905 242839299 -39354365 + L1PB1 LINE L1 5403 5793 -358 297 0 0 0 chr1 242839299 242839332 -39354332 + (CA)n Simple_repeat Simple_repeat 2 34 0 5724 92 12 18 chr1 242839332 242839689 -39353975 + L1PB1 LINE L1 5793 6151 0 599 259 27 58 chr1 242839700 242839764 -39353900 + L2 LINE L2 3027 3091 -222 1840 169 7 0 chr1 242839764 242840065 -39353599 - AluJb SINE Alu -9 303 1 599 259 27 58 chr1 242840065 242840165 -39353499 + L2 LINE L2 3091 3183 -130 1131 228 77 106 chr1 242840165 242840778 -39352886 - MLT1G1 LTR MaLR 0 595 1 599 259 27 58 chr1 242840778 242840871 -39352793 + L2 LINE L2 3183 3277 -36 867 223 14 51 chr1 242841323 242841538 -39352126 + MER63A DNA MER1_type 1 207 -3 422 268 90 79 chr1 242841884 242842328 -39351336 - MLT1J LTR MaLR -7 504 56 240 224 95 41 chr1 242842942 242843089 -39350575 - Charlie7 DNA MER1_type -29 2583 2429 39 22 0 0 chr1 242844901 242844947 -39348717 + AT_rich Low_complexity Low_complexity 1 46 0 739 163 98 33 chr1 242845115 242845299 -39348365 + L1MA9 LINE L1 5880 6075 -237 3053 138 23 23 chr1 242845300 242845816 -39347848 - MER34 LTR ERV1 0 542 27 772 194 29 23 chr1 242845827 242845986 -39347678 + L1MA9 LINE L1 6073 6235 -77 2136 162 6 0 chr1 242845986 242846332 -39347332 - MER7A DNA MER2_type 0 346 1 772 194 29 23 chr1 242846332 242846347 -39347317 + L1MA9 LINE L1 6235 6248 -64 246 339 65 17 chr1 242847144 242847374 -39346290 + L2 LINE L2 2818 3058 -214 247 243 22 59 chr1 242847933 242848069 -39345595 + L1ME4a LINE L1 5620 5750 -2058 21 0 0 0 chr1 242848069 242848090 -39345574 + AT_rich Low_complexity Low_complexity 1 21 0 277 232 95 11 chr1 242848209 242848304 -39345360 - MIR SINE MIR -21 241 139 655 234 5 54 chr1 242848611 242848816 -39344848 - MIR SINE MIR -46 216 22 26 50 0 0 chr1 242848952 242848992 -39344672 + AT_rich Low_complexity Low_complexity 1 40 0 333 271 102 78 chr1 242849064 242849359 -39344305 + L1ME4a LINE L1 5751 6052 -69 22 70 0 0 chr1 242849372 242849415 -39344249 + AT_rich Low_complexity Low_complexity 1 43 0 2238 96 7 10 chr1 242850084 242850376 -39343288 + AluSx SINE Alu 1 291 -21 1982 111 55 4 chr1 242851618 242851889 -39341775 + AluSx SINE Alu 11 295 -17 297 288 72 45 chr1 242852657 242853032 -39340632 - L1M4 LINE L1 -3092 3054 2670 182 265 20 0 chr1 242853164 242853213 -39340451 + MIR SINE MIR 77 126 -82 2128 102 7 7 chr1 242853392 242853676 -39339988 + AluSq SINE Alu 1 284 -29 2015 119 0 4 chr1 242853676 242853945 -39339719 - AluSx SINE Alu -44 268 1 235 131 82 66 chr1 242856653 242856714 -39336950 - HSMAR1 DNA Mariner -1225 62 1 634 234 140 19 chr1 242856747 242856961 -39336703 - MIR SINE MIR -10 252 13 1711 166 19 32 chr1 242859589 242859902 -39333762 + AluJo SINE Alu 1 309 -3 226 170 0 57 chr1 242859980 242860033 -39333631 - L2 LINE L2 0 3313 3264 193 128 0 26 chr1 242860159 242860198 -39333466 + L2 LINE L2 3027 3064 -208 315 239 14 0 chr1 242860640 242860711 -39332953 - MIR3 SINE MIR -28 180 109 1504 206 11 40 chr1 242861005 242861359 -39332305 - MLT1A1 LTR MaLR -21 344 1 751 238 12 0 chr1 242862925 242863089 -39330575 - MIR3 SINE MIR -15 193 28 2360 93 0 7 chr1 242863398 242863700 -39329964 + AluSx SINE Alu 1 300 -12 250 210 230 0 chr1 242863726 242863826 -39329838 - Charlie1 DNA MER1_type -1 2760 2638 1819 158 0 4 chr1 242863830 242864109 -39329555 + AluSx SINE Alu 1 278 -34 420 20 0 0 chr1 242864117 242864166 -39329498 + (GA)n Simple_repeat Simple_repeat 1 49 0 564 15 0 0 chr1 242864166 242864231 -39329433 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 870 188 103 23 chr1 242864248 242864325 -39329339 - Charlie1 DNA MER1_type -137 2624 2555 1854 176 3 3 chr1 242864325 242864627 -39329037 + AluSq SINE Alu 3 304 -9 870 188 103 23 chr1 242864627 242864810 -39328854 - Charlie1 DNA MER1_type -206 2555 2343 278 250 15 29 chr1 242864808 242864876 -39328788 - Charlie1 DNA MER1_type -2690 71 5 * 416 275 66 116 chr1 242865261 242865520 -39328144 - L2 LINE L2 0 3272 3029 2097 153 0 0 chr1 242865520 242865827 -39327837 + AluSx SINE Alu 1 307 -5 416 275 66 116 chr1 242865827 242865869 -39327795 - L2 LINE L2 -243 3029 2986 1672 147 81 4 chr1 242866354 242866626 -39327038 + AluJb SINE Alu 3 295 -17 213 264 0 28 chr1 242869225 242869297 -39324367 + (TATG)n Simple_repeat Simple_repeat 4 73 0 297 280 0 4 chr1 242869308 242869553 -39324111 + (TG)n Simple_repeat Simple_repeat 1 243 0 455 300 0 2 chr1 242869599 242870091 -39323573 + (TG)n Simple_repeat Simple_repeat 1 490 0 505 326 0 0 chr1 242870111 242870286 -39323378 + (TG)n Simple_repeat Simple_repeat 1 175 0 207 268 0 0 chr1 242870367 242870464 -39323200 + (TG)n Simple_repeat Simple_repeat 1 97 0 517 320 6 0 chr1 242870533 242870711 -39322953 + (TG)n Simple_repeat Simple_repeat 2 180 0 409 310 0 0 chr1 242870739 242871042 -39322622 + (TG)n Simple_repeat Simple_repeat 1 303 0 2132 165 37 3 chr1 242871055 242871431 -39322233 - MLT1B LTR MaLR 0 390 2 196 321 19 0 chr1 242873270 242873323 -39320341 - L2 LINE L2 -94 3178 3125 510 348 83 23 chr1 242873604 242874038 -39319626 - L2 LINE L2 -520 2794 2335 197 227 167 0 chr1 242874205 242874271 -39319393 + L2 LINE L2 3229 3305 -8 741 186 26 6 chr1 242875157 242875313 -39318351 + MIR SINE MIR 104 262 0 1026 163 0 0 chr1 242875895 242876055 -39317609 + FRAM SINE Alu 12 171 -5 2000 139 21 75 chr1 242877760 242878149 -39315515 - MLT1B LTR MaLR -22 368 1 208 273 76 15 chr1 242878360 242878426 -39315238 + L3b LINE CR1 1505 1574 -9 240 324 40 0 chr1 242878865 242878939 -39314725 - MIR SINE MIR -111 97 21 224 283 83 25 chr1 242878950 242879070 -39314594 + L3b LINE CR1 1223 1349 -234 218 250 190 0 chr1 242879121 242879221 -39314443 - L2 LINE L2 -4 3309 3191 463 233 29 19 chr1 242884021 242884124 -39309540 - L2 LINE L2 -16 3297 3194 393 250 83 33 chr1 242884637 242884757 -39308907 - L2 LINE L2 0 3313 3188 1393 163 4 8 chr1 242885930 242886170 -39307494 + AluJo SINE Alu 59 297 -15 510 317 76 15 chr1 242886916 242887140 -39306524 - MIR3 SINE MIR -23 185 5 1667 173 10 3 chr1 242887982 242888277 -39305387 + AluJb SINE Alu 1 297 -15 270 56 0 0 chr1 242888290 242888326 -39305338 + (TG)n Simple_repeat Simple_repeat 1 36 0 720 202 131 11 chr1 242888796 242888979 -39304685 - MER3 DNA MER1_type -4 205 1 1478 195 16 16 chr1 242890721 242891024 -39302640 - AluJo SINE Alu -9 303 1 240 261 45 11 chr1 242891883 242891971 -39301693 + L1MC4a LINE L1 6074 6164 -1644 304 211 0 0 chr1 242892155 242892207 -39301457 - AluJ/monomer SINE Alu -13 289 238 5606 104 4 4 chr1 242892499 242893274 -39300390 - L1PA15 LINE L1 0 6165 5391 521 110 44 0 chr1 242894685 242894776 -39298888 + L1MA5A LINE L1 6199 6293 -4 410 287 21 45 chr1 242894804 242894996 -39298668 - MIR SINE MIR -56 206 20 408 20 0 0 chr1 242895567 242895616 -39298048 + (CA)n Simple_repeat Simple_repeat 2 50 0 2166 111 10 0 chr1 242896031 242896338 -39297326 + AluSp SINE Alu 3 312 -1 2411 75 0 3 chr1 242897567 242897873 -39295791 + AluSc SINE Alu 1 305 -4 441 317 124 0 chr1 242898042 242898203 -39295461 - MIR SINE MIR -50 212 32 628 272 44 6 chr1 242898233 242898391 -39295273 + MIR SINE MIR 34 197 -65 1981 139 0 10 chr1 242899414 242899723 -39293941 + AluJb SINE Alu 2 307 -5 189 0 0 0 chr1 242900122 242900143 -39293521 + (A)n Simple_repeat Simple_repeat 1 21 0 314 233 0 0 chr1 242901489 242901549 -39292115 - L2 LINE L2 -3 3310 3251 364 265 93 70 chr1 242902670 242903055 -39290609 + L1ME4a LINE L1 5725 6118 -3 230 167 236 0 chr1 242903169 242903241 -39290423 - MIR SINE MIR -59 203 115 430 209 23 101 chr1 242905515 242905644 -39288020 + MIR SINE MIR 35 153 -109 698 116 33 25 chr1 242905692 242905813 -39287851 - FLAM_C SINE Alu -1 142 21 1166 155 52 9 chr1 242905834 242906047 -39287617 - AluJo SINE Alu -6 306 85 696 288 56 12 chr1 242906066 242906316 -39287348 + MIR SINE MIR 2 262 0 1598 165 5 118 chr1 242906649 242907056 -39286608 + MLT1B LTR MaLR 30 390 0 363 278 177 38 chr1 242907603 242907812 -39285852 + MER102a DNA MER1_type 92 329 -1 468 288 39 26 chr1 242907812 242907965 -39285699 - MIR3 SINE MIR -52 156 2 1984 112 27 0 chr1 242908019 242908313 -39285351 + AluSp SINE Alu 2 303 -10 201 288 119 0 chr1 242908325 242908384 -39285280 - L2 LINE L2 -42 3271 3206 221 207 52 17 chr1 242910428 242910486 -39283178 + MIR SINE MIR 16 75 -133 269 252 243 0 chr1 242910554 242910665 -39282999 + MIR SINE MIR 59 196 -66 183 136 91 68 chr1 242911515 242911559 -39282105 - L2 LINE L2 -1 3312 3268 1481 258 140 7 chr1 242911781 242912386 -39281278 - L2 LINE L2 0 3313 2623 517 286 196 18 chr1 242913148 242913372 -39280292 - Charlie8 DNA MER1_type -2152 265 2 325 231 209 0 chr1 242913389 242913480 -39280184 + L2 LINE L2 3201 3310 -3 252 329 111 0 chr1 242913499 242913602 -39280062 - MIR SINE MIR -66 142 36 22 56 0 0 chr1 242914179 242914215 -39279449 + AT_rich Low_complexity Low_complexity 1 36 0 201 147 0 0 chr1 242914262 242914296 -39279368 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 231 319 74 42 chr1 242914698 242914794 -39278870 - MIR SINE MIR -102 106 10 609 150 0 19 chr1 242915634 242915794 -39277870 + (TG)n Simple_repeat Simple_repeat 2 158 0 785 93 260 0 chr1 242915820 242915970 -39277694 + MER53 DNA DNA 1 189 0 2100 118 3 0 chr1 242917117 242917413 -39276251 + AluSx SINE Alu 1 297 -15 204 182 0 0 chr1 242917602 242917646 -39276018 + (CA)n Simple_repeat Simple_repeat 2 45 0 2133 112 0 20 chr1 242918956 242919261 -39274403 - AluSx SINE Alu -13 299 1 21 57 0 0 chr1 242919269 242919304 -39274360 + AT_rich Low_complexity Low_complexity 1 35 0 237 325 34 8 chr1 242919929 242920046 -39273618 + L2 LINE L2 3119 3238 -75 828 236 130 44 chr1 242920296 242920589 -39273075 + L2 LINE L2 2042 2359 -955 1846 154 3 28 chr1 242920600 242920918 -39272746 + AluSx SINE Alu 1 310 -2 1916 114 0 0 chr1 242921228 242921492 -39272172 - AluSx SINE Alu -48 264 1 546 341 112 34 chr1 242921601 242922153 -39271511 + L2 LINE L2 2691 3272 0 187 305 172 16 chr1 242922851 242922979 -39270685 + L2 LINE L2 3116 3263 -9 270 0 0 0 chr1 242923151 242923181 -39270483 + (CA)n Simple_repeat Simple_repeat 1 30 0 1149 187 89 95 chr1 242923498 242923980 -39269684 + L1MC5 LINE L1 6907 7385 -576 1185 205 12 37 chr1 242924003 242924330 -39269334 + L1MC5 LINE L1 7590 7908 -53 458 264 40 0 chr1 242925702 242925850 -39267814 - L1ME1 LINE L1 -5 6161 6008 246 315 34 55 chr1 242925858 242926004 -39267660 + MIR3 SINE MIR 38 180 -28 253 291 39 31 chr1 242926137 242926166 -39267498 + MIR SINE MIR 65 92 -170 2248 72 3 34 chr1 242926166 242926487 -39267177 - AluSq SINE Alu -2 311 1 253 291 39 31 chr1 242926487 242926584 -39267080 + MIR SINE MIR 92 192 -70 2342 53 0 13 chr1 242927340 242927642 -39266022 - AluSx SINE Alu -14 298 1 2191 92 0 3 chr1 242927717 242928012 -39265652 - AluSx SINE Alu -18 294 1 1287 96 34 29 chr1 242928023 242928231 -39265433 - L1MA5 LINE L1 -2 6298 6090 1900 159 0 6 chr1 242928410 242928724 -39264940 - AluJo SINE Alu 0 312 1 210 171 0 0 chr1 242929843 242929884 -39263780 + GA-rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr1 242930338 242930359 -39263305 + AT_rich Low_complexity Low_complexity 1 21 0 1510 199 61 25 chr1 242930518 242930879 -39262785 - L1ME2 LINE L1 -9 6155 5782 36 40 0 0 chr1 242931064 242931114 -39262550 + AT_rich Low_complexity Low_complexity 1 50 0 229 235 25 84 chr1 242931139 242931258 -39262406 - L1ME4a LINE L1 -84 6037 5926 326 281 135 17 chr1 242931305 242931483 -39262181 - L1ME4a LINE L1 -296 5825 5627 300 215 15 0 chr1 242931485 242931550 -39262114 - MLT2B1 LTR ERVL 0 520 455 1884 143 0 4 chr1 242931551 242931824 -39261840 + AluJb SINE Alu 13 284 -28 466 222 10 0 chr1 242931846 242931945 -39261719 - MLT2D LTR ERVL -312 102 3 195 320 39 0 chr1 242934372 242934450 -39259214 + MIR SINE MIR 86 166 -96 2589 178 40 24 chr1 242934632 242935177 -39258487 - L1MD2 LINE L1 -1 6358 5805 393 284 24 0 chr1 242935267 242935394 -39258270 + MER103 DNA DNA 36 165 -1 451 234 71 33 chr1 242935462 242935646 -39258018 + MIR SINE MIR 11 201 -61 325 308 6 50 chr1 242936452 242936611 -39257053 - MIR3 SINE MIR -19 189 38 209 385 0 0 chr1 242936864 242936955 -39256709 - MIR3 SINE MIR -5 203 113 306 336 62 74 chr1 242938639 242938978 -39254686 - L2 LINE L2 -6 3266 2932 389 292 127 40 chr1 242939084 242939684 -39253980 - L2 LINE L2 -1007 2307 1656 200 139 0 23 chr1 242940275 242940318 -39253346 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 237 195 44 0 chr1 242941044 242941113 -39252551 + MIR SINE MIR 86 139 -69 393 302 0 8 chr1 242941747 242941873 -39251791 - MIR3 SINE MIR -42 166 42 240 59 0 0 chr1 242942086 242942120 -39251544 + (ACTG)n Simple_repeat Simple_repeat 4 37 0 2433 94 0 3 chr1 242943287 242943594 -39250070 + AluSq SINE Alu 1 306 -7 2005 142 13 7 chr1 242944785 242945095 -39248569 - AluSx SINE Alu 0 312 1 1260 257 30 88 chr1 242946177 242946638 -39247026 - L1MC4 LINE L1 0 8042 7556 1056 195 29 5 chr1 242946638 242946848 -39246816 + MER20 DNA MER1_type 4 218 -1 1260 257 30 88 chr1 242946848 242946976 -39246688 - L1MC4 LINE L1 -486 7556 7500 613 196 49 82 chr1 242946976 242947160 -39246504 + MER5B DNA MER1_type 1 178 0 1260 257 30 88 chr1 242947160 242947293 -39246371 - L1MC4 LINE L1 -542 7500 7361 352 282 86 35 chr1 242947333 242947507 -39246157 - L1ME4a LINE L1 -296 5825 5643 1478 266 134 67 chr1 242947713 242948840 -39244824 - L1MCc LINE L1 -5062 1361 159 303 270 146 0 chr1 242948843 242948932 -39244732 - MER63A DNA MER1_type -3 207 106 592 172 76 41 chr1 242949005 242949150 -39244514 - L1MCc LINE L1 -6257 166 17 385 228 0 13 chr1 242951206 242951285 -39242379 - L1MC4 LINE L1 -149 7893 7816 609 157 69 0 chr1 242951302 242951404 -39242260 + MER46A DNA MER2_type 125 233 -3 1654 217 164 18 chr1 242951411 242951922 -39241742 - L1MC4 LINE L1 -978 7064 6479 2197 121 0 3 chr1 242952298 242952596 -39241068 - AluSx SINE Alu -15 297 1 656 257 146 53 chr1 242955146 242955563 -39238101 + MLT1J LTR MaLR 4 459 -52 585 297 190 3 chr1 242955955 242956282 -39237382 - L3 LINE CR1 -10 1567 1180 316 237 34 25 chr1 242956502 242956620 -39237044 - MIR SINE MIR -10 252 134 5032 120 94 53 chr1 242956807 242958140 -39235524 - pTR5 LTR ERV1 -143 2295 757 1841 147 7 10 chr1 242958140 242958432 -39235232 + AluSx SINE Alu 15 305 -7 2205 40 0 40 chr1 242958521 242958799 -39234865 - AluY SINE Alu -44 267 1 22 0 0 0 chr1 242958959 242958981 -39234683 + AT_rich Low_complexity Low_complexity 1 22 0 722 264 29 24 chr1 242959013 242959221 -39234443 + MIR SINE MIR 19 227 -35 28 29 0 0 chr1 242959545 242959580 -39234084 + AT_rich Low_complexity Low_complexity 1 35 0 421 298 67 11 chr1 242960220 242960398 -39233266 - MIR SINE MIR -6 256 69 253 266 169 8 chr1 242960650 242960774 -39232890 + MIR SINE MIR 48 191 -71 544 270 38 38 chr1 242960837 242961048 -39232616 - L2 LINE L2 0 3313 3103 185 319 70 32 chr1 242961056 242961213 -39232451 + L2 LINE L2 2931 3093 -179 4223 142 16 35 chr1 242962673 242963384 -39230280 - MER50 LTR ERV1 -23 711 15 2381 100 7 3 chr1 242963611 242963921 -39229743 + AluSq SINE Alu 1 311 -2 1757 106 97 131 chr1 242964147 242964214 -39229450 - MLT1B LTR MaLR 0 390 322 1834 140 10 27 chr1 242964214 242964514 -39229150 + AluJb SINE Alu 1 295 -17 1757 106 97 131 chr1 242964514 242964736 -39228928 - MLT1B LTR MaLR -68 322 116 2195 109 0 3 chr1 242964736 242965029 -39228635 - AluSx SINE Alu -20 292 1 1757 106 97 131 chr1 242965029 242965142 -39228522 - MLT1B LTR MaLR -274 116 1 4560 53 17 39 chr1 242965534 242966592 -39227072 + MER11A LTR ERVK 1 1266 0 623 169 107 6 chr1 242966876 242967112 -39226552 + LTR33 LTR ERVL 209 513 -8 3769 203 27 14 chr1 242967177 242967980 -39225684 - L1MB8 LINE L1 -12 6166 5353 536 246 22 0 chr1 242967981 242968119 -39225545 - MIR SINE MIR -78 184 44 768 245 74 25 chr1 242969690 242969999 -39223665 - LTR37B LTR ERV1 -20 448 105 353 252 139 9 chr1 242971594 242971709 -39221955 + MIR SINE MIR 18 147 -61 1160 181 73 0 chr1 242971724 242971928 -39221736 - MER58A DNA MER1_type -2 222 4 479 256 0 39 chr1 242973072 242973201 -39220463 - MIR SINE MIR -61 147 24 2052 136 19 13 chr1 242973974 242974282 -39219382 + AluJb SINE Alu 3 312 0 616 301 81 8 chr1 242975242 242975478 -39218186 + MIR SINE MIR 2 254 -8 323 264 109 0 chr1 242975491 242975601 -39218063 - MIR SINE MIR -117 145 24 241 118 39 0 chr1 242976469 242976520 -39217144 + CT-rich Low_complexity Low_complexity 4 56 0 2220 119 7 0 chr1 242977054 242977342 -39216322 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr1 242977342 242977364 -39216300 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2220 119 7 0 chr1 242977364 242977385 -39216279 + AluSx SINE Alu 293 312 0 588 228 7 28 chr1 242977560 242977705 -39215959 + L2 LINE L2 3172 3313 0 621 174 0 0 chr1 242979666 242979758 -39213906 + FLAM_A SINE Alu 16 107 -35 300 186 0 0 chr1 242979766 242979825 -39213839 + GA-rich Low_complexity Low_complexity 1 59 0 450 344 106 40 chr1 242980705 242981453 -39212211 + L2 LINE L2 2134 2930 -384 226 206 278 0 chr1 242981829 242981926 -39211738 + MIR SINE MIR 136 259 -3 180 0 0 0 chr1 242982500 242982520 -39211144 + (GA)n Simple_repeat Simple_repeat 2 21 0 353 250 0 0 chr1 242984118 242984189 -39209475 - MIR SINE MIR -2 260 190 1184 212 62 7 chr1 242984189 242984495 -39209169 - MER5C DNA MER1_type -1 323 1 409 214 94 26 chr1 242984495 242984610 -39209054 - MIR SINE MIR -64 198 76 337 240 10 10 chr1 242984905 242985005 -39208659 + MIR SINE MIR 153 252 -10 1112 120 36 36 chr1 242985181 242985373 -39208291 - MER20 DNA MER1_type -27 192 1 237 284 25 12 chr1 242985461 242985542 -39208122 + GA-rich Low_complexity Low_complexity 2 83 0 278 221 151 0 chr1 242985742 242985828 -39207836 + MIR SINE MIR 83 181 -81 185 319 139 37 chr1 242986002 242986218 -39207446 + L2 LINE L2 2549 2786 -528 2253 97 3 0 chr1 242986321 242986609 -39207055 - AluSq SINE Alu -24 289 1 1313 165 29 2 chr1 242986783 242987072 -39206592 + MER2 DNA MER2_type 1 338 -7 3796 129 76 62 chr1 242987198 242988447 -39205217 - pTR5 LTR ERV1 -143 2295 739 263 328 60 8 chr1 242989616 242989750 -39203914 + MIR3 SINE MIR 53 193 -15 2123 221 79 9 chr1 242990401 242990988 -39202676 - MLT1E2 LTR MaLR 0 626 4 2102 143 55 6 chr1 242991059 242991387 -39202277 + MER2 DNA MER2_type 1 344 0 189 0 0 0 chr1 242991421 242991442 -39202222 + (T)n Simple_repeat Simple_repeat 1 21 0 435 196 0 52 chr1 242991609 242991706 -39201958 + L2 LINE L2 3222 3313 0 1892 129 3 21 chr1 242991799 242991998 -39201666 + MLT2D LTR ERVL 1 195 -219 1767 114 7 37 chr1 242991998 242992271 -39201393 + AluSx SINE Alu 48 312 0 1892 129 3 21 chr1 242992271 242992357 -39201307 + MLT2D LTR ERVL 195 281 -133 189 217 159 14 chr1 242992554 242992623 -39201041 - MIR3 SINE MIR -45 163 85 988 291 69 52 chr1 242992702 242992982 -39200682 + L2 LINE L2 2829 3122 -191 2066 121 3 38 chr1 242992982 242993295 -39200369 - AluSx SINE Alu -8 304 3 988 291 69 52 chr1 242993295 242993491 -39200173 + L2 LINE L2 3122 3313 0 4770 131 32 61 chr1 242993922 242994089 -39199575 - LTR39 LTR ERV1 -2 781 611 1864 140 3 35 chr1 242994089 242994425 -39199239 - AluJb SINE Alu 0 312 1 4770 131 32 61 chr1 242994425 242995061 -39198603 - LTR39 LTR ERV1 -172 611 1 221 302 160 41 chr1 242995724 242995992 -39197672 - L2 LINE L2 -4 3268 2969 249 289 8 12 chr1 242996722 242996848 -39196816 - L1ME LINE L1 -490 5631 5507 4270 145 101 26 chr1 242996915 242998306 -39195358 - pTR5 LTR ERV1 0 2606 1524 232 200 36 0 chr1 242998487 242998542 -39195122 + L1MC4 LINE L1 6642 6698 -1344 697 240 111 22 chr1 242998706 242998931 -39194733 - MIR SINE MIR 0 262 18 1540 245 174 17 chr1 242998981 242999584 -39194080 + LTR50 LTR ERVL 9 706 -89 631 257 213 40 chr1 242999681 243000031 -39193633 + LTR16A LTR ERVL 26 429 -21 294 29 0 0 chr1 243001681 243001716 -39191948 + (TG)n Simple_repeat Simple_repeat 2 36 0 2598 162 27 5 chr1 243001997 243002410 -39191254 - MSTB LTR MaLR -4 422 1 1189 239 86 13 chr1 243002471 243002895 -39190769 + MLT1G1 LTR MaLR 3 595 0 784 240 135 61 chr1 243002895 243003048 -39190616 - HAL1 LINE L1 -1016 1491 1351 222 37 0 0 chr1 243003048 243003075 -39190589 + (TAA)n Simple_repeat Simple_repeat 1 27 0 784 240 135 61 chr1 243003075 243003545 -39190119 - HAL1 LINE L1 -1156 1351 822 2792 97 8 3 chr1 243003715 243004075 -39189589 - THE1B LTR MaLR -2 362 1 8731 212 54 56 chr1 243004166 243004933 -39188731 - L1MEc LINE L1 -1546 4669 3902 227 69 0 0 chr1 243004933 243004962 -39188702 + HSMAR1 DNA Mariner 1 29 -1258 8731 212 54 56 chr1 243004962 243007183 -39186481 - L1MEc LINE L1 -2313 3902 1734 625 63 21 11 chr1 243007250 243007345 -39186319 + (TTCC)n Simple_repeat Simple_repeat 1 96 0 1561 206 13 52 chr1 243007345 243007655 -39186009 - AluJo SINE Alu -2 300 3 1847 156 7 23 chr1 243007808 243008109 -39185555 + AluJo SINE Alu 1 296 -16 310 253 0 33 chr1 243008289 243008380 -39185284 + MIR SINE MIR 67 154 -108 1947 282 78 18 chr1 243009254 243010415 -39183249 + HERVL LTR ERVL 681 2021 -2975 1968 348 70 20 chr1 243010466 243011709 -39181955 + HERVL LTR ERVL 4062 5366 -288 685 341 54 4 chr1 243011861 243012122 -39181542 + LTR16B LTR ERVL 189 462 -2 22 56 0 0 chr1 243012183 243012219 -39181445 + AT_rich Low_complexity Low_complexity 1 36 0 336 250 10 67 chr1 243012219 243012323 -39181341 - HAL1 LINE L1 -13 2494 2397 43987 31 21 1 chr1 243012732 243018762 -39174902 - L1HS LINE L1 -1 6154 1 3374 241 63 67 chr1 243018754 243020193 -39173471 - HAL1 LINE L1 -89 2418 985 * 2526 62 0 0 chr1 243020544 243020848 -39172816 - AluY SINE Alu -7 304 1 181 125 0 143 chr1 243020954 243021010 -39172654 + MER5B DNA MER1_type 2 49 -129 260 208 0 0 chr1 243021053 243021106 -39172558 - L1MC1 LINE L1 -5 6328 6276 363 303 58 39 chr1 243021142 243021297 -39172367 - MER5A DNA MER1_type -25 164 7 233 132 57 0 chr1 243021898 243021951 -39171713 + (TA)n Simple_repeat Simple_repeat 1 56 0 1910 126 36 7 chr1 243022195 243022501 -39171163 + AluSx SINE Alu 1 314 0 1858 135 0 0 chr1 243022533 243022785 -39170879 - AluSq SINE Alu -61 252 1 302 232 0 24 chr1 243023083 243023165 -39170499 - MLT1K LTR MaLR 0 588 509 246 275 0 64 chr1 243023165 243023192 -39170472 - LTR67 LTR ERVL 0 557 456 468 244 16 31 chr1 243023432 243023559 -39170105 - MLT1K LTR MaLR -327 261 137 185 146 21 0 chr1 243023574 243023622 -39170042 + GA-rich Low_complexity Low_complexity 2 50 0 1017 271 53 72 chr1 243023636 243024109 -39169555 - LTR16B LTR ERVL 0 464 1 683 348 173 4 chr1 243025185 243025642 -39168022 - L3 LINE CR1 -205 1372 839 413 191 0 12 chr1 243025794 243025878 -39167786 + MER96 DNA MER1_type? 4 86 -89 24 67 0 0 chr1 243026858 243026903 -39166761 + AT_rich Low_complexity Low_complexity 1 45 0 2442 99 0 0 chr1 243027012 243027324 -39166340 + AluSx SINE Alu 1 312 0 1971 84 65 0 chr1 243027343 243027629 -39166035 + AluSc SINE Alu 1 303 0 1061 241 121 3 chr1 243027723 243028030 -39165634 - MER2 DNA MER2_type -1 344 2 2316 101 3 0 chr1 243028104 243028402 -39165262 + AluSx SINE Alu 1 299 -13 248 77 26 0 chr1 243028404 243028443 -39165221 + (TA)n Simple_repeat Simple_repeat 2 41 0 372 250 31 56 chr1 243028505 243028665 -39164999 - HAL1b LINE L1 -439 909 754 902 290 43 77 chr1 243029090 243029358 -39164306 - HAL1 LINE L1 -691 1816 1540 1938 157 3 0 chr1 243029358 243029651 -39164013 - AluSx SINE Alu -18 294 1 902 290 43 77 chr1 243029651 243030083 -39163581 - HAL1 LINE L1 -967 1540 1140 1946 212 10 55 chr1 243030105 243030628 -39163036 - L1ME1 LINE L1 -5 6161 5663 1964 144 0 13 chr1 243030629 243030934 -39162730 - AluJb SINE Alu -11 301 1 2427 76 0 3 chr1 243031220 243031523 -39162141 - AluSc SINE Alu -4 305 4 182 377 138 14 chr1 243031905 243032266 -39161398 - L2 LINE L2 -656 2658 2253 2036 120 34 0 chr1 243032612 243032904 -39160760 + AluSx SINE Alu 1 302 -10 200 162 0 0 chr1 243033523 243033560 -39160104 - L2 LINE L2 0 3313 3277 1011 219 0 5 chr1 243034921 243035131 -39158533 - MER3 DNA MER1_type 0 209 1 920 64 80 0 chr1 243035244 243035369 -39158295 + MER85 DNA T2_type 1 135 -4 210 37 0 0 chr1 243036471 243036498 -39157166 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 270 0 0 0 chr1 243036497 243036527 -39157137 + (GA)n Simple_repeat Simple_repeat 1 30 0 218 79 0 26 chr1 243036625 243036663 -39157001 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 245 73 0 24 chr1 243036933 243036974 -39156690 + (GGGTG)n Simple_repeat Simple_repeat 5 44 0 30 93 0 0 chr1 243037029 243037115 -39156549 + GC_rich Low_complexity Low_complexity 1 86 0 301 235 158 108 chr1 243037219 243037606 -39156058 - L1M2 LINE L1 -5483 1366 961 227 394 30 30 chr1 243039326 243039458 -39154206 - L2 LINE L2 -34 3238 3107 552 294 256 29 chr1 243039524 243040044 -39153620 - L3 LINE CR1 -171 1406 769 200 436 99 0 chr1 243040617 243040718 -39152946 + L2 LINE L2 3119 3229 -43 1683 179 55 12 chr1 243040722 243041052 -39152612 + MER2 DNA MER2_type 1 344 0 253 314 29 0 chr1 243041671 243041741 -39151923 - L3 LINE CR1 -1070 507 436 186 103 0 0 chr1 243041841 243041870 -39151794 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 255 39 20 chr1 243041941 243041992 -39151672 + MIR3 SINE MIR 140 191 -17 1916 120 0 18 chr1 243042193 243042476 -39151188 + AluSx SINE Alu 34 311 -1 22 35 0 0 chr1 243043317 243043346 -39150318 + AT_rich Low_complexity Low_complexity 1 29 0 332 266 35 92 chr1 243043957 243044130 -39149534 - MER117 DNA MER1_type -31 166 4 194 318 84 37 chr1 243044185 243044292 -39149372 - MIR SINE MIR -150 112 1 14980 121 32 10 chr1 243044751 243047117 -39146547 + Tigger1 DNA MER2_type 1 2418 0 227 254 119 60 chr1 243047621 243047755 -39145909 + MIR3 SINE MIR 53 194 -14 2415 75 0 0 chr1 243048231 243048525 -39145139 + AluSc SINE Alu 1 294 -15 2834 113 43 51 chr1 243049959 243050471 -39143193 - L1MA7 LINE L1 -28 6263 5756 1041 266 47 83 chr1 243050479 243051057 -39142607 + L1ME3A LINE L1 5584 6140 -30 2038 143 7 0 chr1 243053636 243053944 -39139720 - AluSx SINE Alu -2 310 1 1161 359 97 14 chr1 243053956 243054656 -39139008 + L2 LINE L2 2045 2802 -512 633 137 0 173 chr1 243054657 243054825 -39138839 - MLT1-int LTR MaLR -89 1282 1144 312 278 61 0 chr1 243054858 243054973 -39138691 - HAL1 LINE L1 -322 2185 2064 1031 285 32 35 chr1 243055178 243055581 -39138083 - MLT1J1 LTR MaLR 0 446 45 207 0 0 0 chr1 243055791 243055814 -39137850 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 2184 107 7 3 chr1 243056367 243056665 -39136999 - AluSx SINE Alu -13 299 1 1175 267 106 23 chr1 243056890 243057587 -39136077 - L1M4 LINE L1 -1015 5131 4377 369 279 127 0 chr1 243057595 243057753 -39135911 - L1M4 LINE L1 -1813 4333 4156 3229 133 36 76 chr1 243057845 243058066 -39135598 + L1MB7 LINE L1 5485 5713 -471 2224 117 0 13 chr1 243058066 243058382 -39135282 - AluSx SINE Alu 0 312 1 3229 133 36 76 chr1 243058382 243058872 -39134792 + L1MB7 LINE L1 5713 6168 -16 244 270 40 0 chr1 243059068 243059142 -39134522 + L3 LINE CR1 576 652 -925 364 339 27 63 chr1 243060368 243060589 -39133075 + MIR SINE MIR 20 232 -30 26 30 0 0 chr1 243061107 243061140 -39132524 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 243061202 243061223 -39132441 + AT_rich Low_complexity Low_complexity 1 21 0 278 261 39 31 chr1 243062775 243062905 -39130759 - L1P LINE L1 -1130 5016 4886 2102 148 36 6 chr1 243062963 243063327 -39130337 + THE1C LTR MaLR 1 375 0 1704 219 25 31 chr1 243063581 243063973 -39129691 - MER68 LTR ERV1 -172 390 1 3415 166 46 13 chr1 243064026 243064634 -39129030 - L1PA16 LINE L1 -20 6146 5519 5275 239 57 38 chr1 243064642 243064813 -39128851 - L1M4 LINE L1 -1149 4997 4831 2045 130 0 3 chr1 243064813 243065105 -39128559 - AluSc SINE Alu -15 294 4 5275 239 57 38 chr1 243065105 243066818 -39126846 - L1M4 LINE L1 -1315 4831 3076 923 237 22 22 chr1 243066843 243067117 -39126547 - MER20B DNA MER1_type -40 743 470 827 157 4 10 chr1 243067175 243067327 -39126337 - L1MC1 LINE L1 -160 6173 6037 1334 136 21 25 chr1 243067427 243067670 -39125994 - L1MC1 LINE L1 -278 6055 5814 * 12490 189 23 17 chr1 243067669 243068414 -39125250 - L1PA16 LINE L1 0 6869 6130 2253 92 26 0 chr1 243068414 243068717 -39124947 - AluY SINE Alu 0 311 1 12490 189 23 17 chr1 243068717 243069610 -39124054 - L1PA16 LINE L1 -739 6130 5244 2242 95 16 3 chr1 243069610 243069916 -39123748 - AluSx SINE Alu 0 312 3 12490 189 23 17 chr1 243069916 243072139 -39121525 - L1PA16 LINE L1 -1625 5244 2992 43441 45 2 0 chr1 243072151 243078289 -39115375 - L1PA4 LINE L1 -2 6153 4 328 264 11 11 chr1 243078287 243078378 -39115286 - L1PA16 LINE L1 -3844 3005 2915 * 6239 103 19 3 chr1 243078378 243080106 -39113558 - L1PA11 LINE L1 0 6174 4431 3988 115 21 54 chr1 243080106 243080378 -39113286 - L1PA16 LINE L1 -4046 2803 2524 1805 187 3 16 chr1 243080378 243080694 -39112970 - AluJo SINE Alu 0 312 1 3988 115 21 54 chr1 243080694 243081107 -39112557 - L1PA16 LINE L1 -4325 2524 2157 1528 210 0 0 chr1 243081107 243081378 -39112286 - AluJb SINE Alu -25 287 17 3988 115 21 54 chr1 243081378 243081458 -39112206 - L1PA16 LINE L1 -4692 2157 2076 3490 167 5 4 chr1 243081456 243082208 -39111456 - L1MC1 LINE L1 -500 5833 5083 * 1926 276 67 28 chr1 243082205 243083431 -39110233 - L1M4 LINE L1 -4947 1333 16 * 3221 271 97 37 chr1 243083429 243083595 -39110069 - L1MEc LINE L1 -4538 1858 1703 2189 144 83 2 chr1 243083595 243083991 -39109673 - MSTA LTR MaLR 0 428 1 8758 177 18 16 chr1 243083991 243085262 -39108402 - MSTA-int LTR MaLR 0 1651 384 2245 86 0 26 chr1 243085262 243085565 -39108099 + AluY SINE Alu 1 295 -16 8758 177 18 16 chr1 243085565 243085593 -39108071 - MSTA-int LTR MaLR -1267 384 358 1868 97 124 0 chr1 243085593 243085860 -39107804 - AluSx SINE Alu -12 300 1 8758 177 18 16 chr1 243085860 243086207 -39107457 - MSTA-int LTR MaLR -1293 358 1 2071 173 84 0 chr1 243086207 243086601 -39107063 - MSTA LTR MaLR 0 428 2 3221 271 97 37 chr1 243086601 243088149 -39105515 - L1MEc LINE L1 -4692 1704 39 412 217 33 0 chr1 243089254 243089346 -39104318 - MER103 DNA DNA -70 96 2 357 125 0 0 chr1 243089463 243089519 -39104145 + (TA)n Simple_repeat Simple_repeat 2 57 0 667 75 0 28 chr1 243089601 243089707 -39103957 + L1MA3 LINE L1 6203 6305 0 3110 170 16 12 chr1 243089791 243090570 -39103094 + L1PB4 LINE L1 4703 5490 -666 1566 125 0 0 chr1 243090570 243090786 -39102878 + AluSg/x SINE Alu 83 298 -12 3110 170 16 12 chr1 243090786 243091074 -39102590 + L1PB4 LINE L1 5490 5776 -380 1133 131 6 0 chr1 243091074 243091242 -39102422 - FRAM SINE Alu -2 174 6 2170 149 32 3 chr1 243091242 243091617 -39102047 + L1PB4 LINE L1 5763 6148 -8 957 349 39 27 chr1 243091674 243092264 -39101400 + L1PA13 LINE L1 788 1384 -6190 11551 238 22 12 chr1 243092729 243096575 -39097089 + L1PA13 LINE L1 2185 6097 -1487 651 186 120 4 chr1 243096572 243096762 -39096902 + L1PA16 LINE L1 5937 6163 -2 * 5908 153 47 10 chr1 243097079 243098989 -39094675 + L1MA4A LINE L1 4324 6297 -6 545 270 149 0 chr1 243099168 243099342 -39094322 + MIR SINE MIR 54 253 -9 318 50 0 0 chr1 243099399 243099439 -39094225 + (CA)n Simple_repeat Simple_repeat 1 40 0 2037 87 4 4 chr1 243099549 243099824 -39093840 - AluSg SINE Alu -8 302 28 274 302 83 36 chr1 243100147 243100425 -39093239 - L1 LINE L1 -2143 4003 3713 907 280 177 16 chr1 243100486 243101019 -39092645 - L2 LINE L2 -94 3219 2615 567 239 45 118 chr1 243101136 243101492 -39092172 - L1ME3A LINE L1 -89 6081 5752 739 287 101 37 chr1 243101515 243102297 -39091367 - L1ME3A LINE L1 -636 5528 4693 341 338 74 65 chr1 243102984 243103336 -39090328 - L3 LINE CR1 -593 984 630 24 77 0 0 chr1 243105695 243105747 -39087917 + AT_rich Low_complexity Low_complexity 1 52 0 29 84 0 0 chr1 243106052 243106123 -39087541 + AT_rich Low_complexity Low_complexity 1 71 0 25 51 0 0 chr1 243106424 243106463 -39087201 + AT_rich Low_complexity Low_complexity 1 39 0 834 246 48 9 chr1 243106667 243106895 -39086769 + MIR SINE MIR 2 238 -24 660 254 132 31 chr1 243106903 243107131 -39086533 + MIR SINE MIR 12 262 0 2143 108 10 0 chr1 243107305 243107601 -39086063 - AluSx SINE Alu -13 299 1 1317 112 74 5 chr1 243107864 243108079 -39085585 + MER30 DNA MER1_type 1 230 0 27 29 0 0 chr1 243108320 243108354 -39085310 + AT_rich Low_complexity Low_complexity 1 34 0 208 294 0 15 chr1 243108859 243108927 -39084737 + CT-rich Low_complexity Low_complexity 2 68 0 228 111 0 0 chr1 243109229 243109265 -39084399 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 205 275 101 29 chr1 243109267 243109336 -39084328 - L2 LINE L2 -10 3303 3230 721 222 206 0 chr1 243109708 243109902 -39083762 + MIR SINE MIR 2 235 -27 231 313 220 86 chr1 243111041 243111354 -39082310 + L2 LINE L2 2918 3272 0 2238 116 7 0 chr1 243111630 243111940 -39081724 - AluSx SINE Alu 0 312 1 1716 153 46 0 chr1 243112026 243112308 -39081356 - AluSx SINE Alu -17 295 1 1767 149 42 104 chr1 243113797 243114295 -39079369 - Charlie1b DNA MER1_type -18 505 39 191 311 0 0 chr1 243114391 243114436 -39079228 + L2 LINE L2 3211 3255 -17 2113 111 0 3 chr1 243117073 243117371 -39076293 - AluSc SINE Alu -12 297 1 23 68 0 0 chr1 243117454 243117498 -39076166 + AT_rich Low_complexity Low_complexity 1 44 0 2408 78 10 0 chr1 243117794 243118100 -39075564 + AluSc SINE Alu 1 309 0 932 198 46 15 chr1 243118291 243118340 -39075324 + MER3 DNA MER1_type 1 55 -154 254 267 76 64 chr1 243118340 243118512 -39075152 - MER3 DNA MER1_type 0 209 36 192 218 55 18 chr1 243118562 243118617 -39075047 + L3 LINE CR1 1521 1577 0 903 239 60 100 chr1 243118952 243119500 -39074164 - L1ME4a LINE L1 -119 6002 5477 261 222 0 0 chr1 243119790 243119853 -39073811 + (TATG)n Simple_repeat Simple_repeat 2 64 0 388 321 79 44 chr1 243121446 243121698 -39071966 + MIR SINE MIR 1 261 -1 2275 84 0 0 chr1 243122294 243122580 -39071084 - AluSg SINE Alu -24 286 1 345 24 0 0 chr1 243125544 243125586 -39068078 + (CA)n Simple_repeat Simple_repeat 2 43 0 26 50 0 0 chr1 243125688 243125728 -39067936 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 243125771 243125799 -39067865 + AT_rich Low_complexity Low_complexity 1 28 0 1332 167 13 8 chr1 243125910 243126149 -39067515 - Tigger2a DNA MER2_type 0 434 195 959 203 0 16 chr1 243126180 243126367 -39067297 + AluJo SINE Alu 112 295 -17 1166 144 15 20 chr1 243126368 243126569 -39067095 - Tigger2a DNA MER2_type -232 202 3 1946 164 14 6 chr1 243126830 243127189 -39066475 - L1MB3 LINE L1 -8 6175 5814 5651 189 28 14 chr1 243127204 243129069 -39064595 - L1MB3 LINE L1 -7 6176 4281 1842 146 3 37 chr1 243129069 243129390 -39064274 - AluSx SINE Alu 0 312 3 5651 189 28 14 chr1 243129390 243129647 -39064017 - L1MB3 LINE L1 -1902 4281 4029 1083 167 5 34 chr1 243129840 243130087 -39063577 - AluJb SINE Alu 0 325 85 1890 229 71 13 chr1 243130111 243130662 -39063002 - L1MB3 LINE L1 -2232 3914 3332 868 283 28 16 chr1 243132977 243133224 -39060440 - MIR SINE MIR 0 262 13 24 0 0 0 chr1 243133356 243133380 -39060284 + AT_rich Low_complexity Low_complexity 1 24 0 13239 208 29 31 chr1 243133384 243138199 -39055465 - L1PB4 LINE L1 -6 7588 2721 6657 56 26 1 chr1 243138321 243139464 -39054200 + L1PA7 LINE L1 4990 6154 0 347 209 139 0 chr1 243140508 243140594 -39053070 + L1MC4a LINE L1 5871 5968 -1840 1671 220 87 22 chr1 243140677 243141090 -39052574 - MER70B LTR ERVL -135 443 4 6097 66 16 0 chr1 243141269 243142090 -39051574 - L1P LINE L1 -958 5188 4355 590 299 197 16 chr1 243142410 243142791 -39050873 - L2 LINE L2 -664 2650 2201 1284 193 8 12 chr1 243143621 243144002 -39049662 - MSTB LTR MaLR 0 426 1 1911 158 0 10 chr1 243145027 243145331 -39048333 + AluSx SINE Alu 1 301 -11 1738 215 51 26 chr1 243145331 243145783 -39047881 - L1MB8 LINE L1 -43 6135 5673 531 286 130 5 chr1 243145794 243145979 -39047685 - MIR SINE MIR -44 218 11 22 0 0 0 chr1 243145979 243146001 -39047663 + AT_rich Low_complexity Low_complexity 1 22 0 297 301 0 12 chr1 243146149 243146232 -39047432 + L2 LINE L2 3187 3268 -4 2162 108 0 3 chr1 243146339 243146635 -39047029 - AluSg SINE Alu -15 295 1 880 214 109 22 chr1 243146806 243147082 -39046582 - L1MC4 LINE L1 -555 7487 7188 397 272 37 15 chr1 243147090 243147226 -39046438 - L1MC4 LINE L1 -976 7066 6928 1990 156 36 25 chr1 243147235 243147595 -39046069 - THE1B LTR MaLR 0 364 1 11186 92 5 37 chr1 243147595 243148372 -39045292 - THE1B-int LTR MaLR 0 1580 882 1985 78 4 4 chr1 243148372 243148640 -39045024 - L1PA7 LINE L1 0 6154 5887 11186 92 5 37 chr1 243148640 243149495 -39044169 - THE1B-int LTR MaLR -698 882 1 2061 167 31 19 chr1 243149495 243149855 -39043809 - THE1B LTR MaLR 0 364 1 1118 259 145 41 chr1 243149891 243150689 -39042975 - L1MC4a LINE L1 -1081 6727 5803 1176 68 0 0 chr1 243151165 243151313 -39042351 - AluY SINE Alu -18 293 146 2170 103 3 0 chr1 243151321 243151623 -39042041 + AluSq SINE Alu 3 305 -8 24 0 0 0 chr1 243151751 243151775 -39041889 + AT_rich Low_complexity Low_complexity 1 24 0 438 305 108 41 chr1 243152240 243152509 -39041155 - L2 LINE L2 -399 2915 2629 1054 228 4 12 chr1 243152768 243153009 -39040655 - HAL1 LINE L1 -759 1748 1510 286 292 103 15 chr1 243153060 243153255 -39040409 - HAL1 LINE L1 -1079 1428 1217 666 286 169 56 chr1 243153282 243154050 -39039614 - HAL1 LINE L1 -1415 1092 238 195 343 238 0 chr1 243154101 243154273 -39039391 + MIR SINE MIR 48 260 -2 1340 159 75 25 chr1 243154473 243154712 -39038952 + AluJo SINE Alu 1 251 -61 1646 92 147 40 chr1 243155472 243155744 -39037920 + AluY SINE Alu 1 301 -10 1990 123 0 3 chr1 243155776 243156083 -39037581 - AluSx SINE Alu 0 306 1 27 29 0 0 chr1 243156508 243156542 -39037122 + AT_rich Low_complexity Low_complexity 1 34 0 567 242 27 20 chr1 243157898 243158047 -39035617 - MIR SINE MIR -11 251 102 225 0 0 0 chr1 243158366 243158391 -39035273 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 333 0 0 0 chr1 243158390 243158427 -39035237 + (GA)n Simple_repeat Simple_repeat 2 38 0 307 296 126 31 chr1 243159092 243159251 -39034413 + MIR3 SINE MIR 31 204 -4 614 331 85 24 chr1 243161859 243162367 -39031297 - L1M4 LINE L1 -816 5330 4792 22 35 0 0 chr1 243162803 243162832 -39030832 + AT_rich Low_complexity Low_complexity 1 29 0 637 154 26 0 chr1 243163064 243163181 -39030483 - L1MB4 LINE L1 -247 5933 5814 4777 166 28 11 chr1 243163201 243164062 -39029602 - L1MB4 LINE L1 -1 6179 5304 236 200 100 0 chr1 243164073 243164133 -39029531 - L1MB4 LINE L1 -919 5227 5162 2531 78 9 9 chr1 243164136 243164483 -39029181 + THE1C LTR MaLR 1 347 -28 36 82 0 0 chr1 243164483 243164568 -39029096 + AT_rich Low_complexity Low_complexity 1 85 0 7569 110 17 46 chr1 243164673 243165700 -39027964 - L1PA4 LINE L1 -6 6149 5164 354 0 0 0 chr1 243165700 243165739 -39027925 + THE1C LTR MaLR 337 375 0 7569 110 17 46 chr1 243165739 243166431 -39027233 - L1PA4 LINE L1 -991 5164 4454 752 276 81 3 chr1 243166903 243167247 -39026417 - L1MB4 LINE L1 -2004 4142 3772 763 289 140 40 chr1 243167302 243168601 -39025063 - L1MB4 LINE L1 -2452 3694 2266 247 315 33 11 chr1 243169215 243169307 -39024357 - L3b LINE CR1 -127 1456 1363 200 316 116 11 chr1 243169384 243169479 -39024185 - MIR SINE MIR -83 125 21 216 0 0 0 chr1 243169849 243169873 -39023791 + (T)n Simple_repeat Simple_repeat 1 24 0 180 261 0 22 chr1 243170076 243170122 -39023542 - MIR SINE MIR -116 146 102 23 33 0 0 chr1 243170210 243170240 -39023424 + AT_rich Low_complexity Low_complexity 1 30 0 28 48 0 0 chr1 243171061 243171103 -39022561 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 243172373 243172402 -39021262 + AT_rich Low_complexity Low_complexity 1 29 0 578 274 68 12 chr1 243173123 243173371 -39020293 - MIR SINE MIR 0 262 1 3264 142 52 71 chr1 243173614 243174277 -39019387 - LTR1 LTR ERV1 0 785 197 2306 78 24 0 chr1 243174277 243174571 -39019093 - AluSg SINE Alu -9 301 1 3264 142 52 71 chr1 243174571 243174765 -39018899 - LTR1 LTR ERV1 -588 197 1 25 51 0 0 chr1 243174860 243174899 -39018765 + AT_rich Low_complexity Low_complexity 1 39 0 2476 199 94 38 chr1 243175254 243175475 -39018189 - L1MB7 LINE L1 -35 6149 5942 2484 130 47 0 chr1 243175475 243175884 -39017780 - MSTA LTR MaLR 0 428 1 2476 199 94 38 chr1 243175884 243175964 -39017700 - L1MB7 LINE L1 -242 5942 5868 2026 172 59 7 chr1 243175964 243176371 -39017293 - MSTA LTR MaLR 0 428 1 2476 199 94 38 chr1 243176371 243176751 -39016913 - L1MB7 LINE L1 -316 5868 5429 2791 16 0 0 chr1 243176967 243177277 -39016387 + AluY SINE Alu 1 310 -1 1650 169 7 27 chr1 243177689 243177990 -39015674 - AluJb SINE Alu -16 296 2 243 167 0 0 chr1 243178083 243178125 -39015539 - MER106B DNA MER1_type 0 1059 1018 31 44 0 0 chr1 243178133 243178178 -39015486 + AT_rich Low_complexity Low_complexity 1 45 0 419 138 0 221 chr1 243178190 243178335 -39015329 + L1PA16 LINE L1 6038 6150 -16 575 236 19 32 chr1 243178339 243178496 -39015168 - MER106B DNA MER1_type -903 156 2 733 307 4 16 chr1 243178538 243178792 -39014872 + L1MEc LINE L1 37 287 -6109 228 219 105 123 chr1 243179529 243179643 -39014021 - L2 LINE L2 -5 3267 3156 278 285 70 61 chr1 243179861 243180089 -39013575 - L2 LINE L2 -230 3042 2813 1128 164 29 5 chr1 243180283 243180490 -39013174 - Tigger1 DNA MER2_type 0 2418 2207 737 191 38 0 chr1 243180485 243180616 -39013048 - Tigger1 DNA MER2_type -2282 136 1 * 506 321 14 62 chr1 243181509 243181799 -39011865 - ERVL LTR ERVL -2215 3549 3274 1914 155 3 35 chr1 243181913 243182229 -39011435 - AluSx SINE Alu -6 306 1 1529 181 42 35 chr1 243182361 243182513 -39011151 - AluJo SINE Alu -22 290 134 1915 159 3 3 chr1 243182513 243182808 -39010856 - AluJb SINE Alu -17 295 1 1529 181 42 35 chr1 243182808 243182943 -39010721 - AluJo SINE Alu -178 134 1 1158 345 42 24 chr1 243182959 243183820 -39009844 - ERVL LTR ERVL -2405 3249 2374 270 329 56 12 chr1 243183886 243184047 -39009617 - ERVL LTR ERVL -3385 2269 2102 2090 274 48 28 chr1 243184063 243185052 -39008612 - L1M4 LINE L1 -1723 4423 3416 2114 229 50 10 chr1 243185098 243185893 -39007771 - L1MC4 LINE L1 -607 7435 6460 344 203 108 22 chr1 243186885 243187117 -39006547 - L1M4 LINE L1 -2812 3334 3083 2332 55 7 0 chr1 243187140 243187433 -39006231 - L1PA7 LINE L1 0 6154 5860 1799 36 0 0 chr1 243187433 243187657 -39006007 + L1PA7 LINE L1 5652 5875 -297 517 189 43 128 chr1 243187652 243187821 -39005843 - L1M4 LINE L1 -3054 3092 2963 * 5616 50 0 0 chr1 243187821 243188505 -39005159 - L1PA7 LINE L1 -3 6151 5468 517 189 43 128 chr1 243188505 243188663 -39005001 - L1M4 LINE L1 -3183 2963 2793 1587 117 95 59 chr1 243188663 243189206 -39004458 - MER51A LTR ERV1 0 634 1 376 296 15 0 chr1 243189207 243189339 -39004325 - L1M4 LINE L1 -3351 2795 2662 36 53 0 0 chr1 243189668 243189725 -39003939 + AT_rich Low_complexity Low_complexity 1 57 0 1472 175 0 4 chr1 243190345 243190585 -39003079 + AluJb SINE Alu 1 239 -73 592 297 10 20 chr1 243190699 243190894 -39002770 + MLT1L LTR MaLR 105 297 -318 1713 161 48 27 chr1 243191670 243192006 -39001658 - MER2 DNA MER2_type 0 344 2 1570 167 87 7 chr1 243194216 243194492 -38999172 - AluJo SINE Alu -14 298 1 654 286 48 13 chr1 243194956 243195183 -38998481 - MIR SINE MIR -26 236 2 200 212 17 203 chr1 243196801 243196835 -38996829 + L2 LINE L2 3190 3229 -84 1863 163 14 7 chr1 243196835 243197129 -38996535 + AluJb SINE Alu 3 298 -14 200 212 17 203 chr1 243197129 243197212 -38996452 + L2 LINE L2 3229 3285 -28 332 302 76 51 chr1 243197214 243197612 -38996052 - MLT1J LTR MaLR -5 470 102 1559 148 0 48 chr1 243197625 243197896 -38995768 - AluSx SINE Alu -17 295 38 201 74 0 0 chr1 243197932 243197959 -38995705 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 1402 99 0 0 chr1 243201036 243201237 -38992427 - L1PA13 LINE L1 -3 6160 5960 1621 168 13 59 chr1 243201614 243201917 -38991747 - AluJo SINE Alu -23 289 1 2583 66 0 0 chr1 243202208 243202511 -38991153 + AluY SINE Alu 1 303 -8 487 320 8 0 chr1 243202601 243202729 -38990935 + MIR3 SINE MIR 71 199 -9 366 343 50 15 chr1 243202878 243203079 -38990585 + LTR67 LTR ERVL 82 289 -268 286 211 14 0 chr1 243203284 243203355 -38990309 + LTR67 LTR ERVL 478 549 -8 865 222 32 16 chr1 243203977 243204162 -38989502 + MER5A DNA MER1_type 2 189 0 231 318 0 0 chr1 243204172 243204235 -38989429 + MER58 DNA MER1_type 4 66 -2354 227 302 12 12 chr1 243204429 243204515 -38989149 + MLT1J2 LTR MaLR 363 448 -2 2293 156 35 24 chr1 243204579 243205002 -38988662 + MSTA LTR MaLR 1 428 0 1245 228 25 0 chr1 243205058 243205334 -38988330 - LTR16A LTR ERVL 0 450 168 2593 104 5 3 chr1 243205337 243205711 -38987953 - THE1C LTR MaLR 0 375 1 2594 98 2 18 chr1 243205711 243206108 -38987556 - THE1C-int LTR MaLR 0 1580 1190 505 203 51 25 chr1 243206108 243206226 -38987438 - LTR16A LTR ERVL -274 176 56 323 120 0 0 chr1 243206277 243206327 -38987337 - THE1C LTR MaLR -325 50 1 274 140 0 0 chr1 243206327 243206377 -38987287 - THE1C-int LTR MaLR 0 1580 1531 427 232 180 16 chr1 243206557 243206880 -38986784 + HAL1b LINE L1 971 1346 -2 459 342 134 29 chr1 243207151 243207598 -38986066 - L2 LINE L2 -1206 2108 1615 529 329 128 64 chr1 243207627 243208034 -38985630 - L2 LINE L2 -2230 1084 704 6488 58 11 18 chr1 243208034 243208236 -38985428 + L1PA7 LINE L1 5284 5486 -668 2100 136 3 3 chr1 243208236 243208545 -38985119 + AluSc SINE Alu 1 309 0 6488 58 11 18 chr1 243208545 243209214 -38984450 + L1PA7 LINE L1 5486 6149 -5 529 329 128 64 chr1 243209214 243209588 -38984076 - L2 LINE L2 -2610 704 253 2293 91 3 0 chr1 243209690 243209975 -38983689 - AluSp SINE Alu -19 294 9 1970 89 72 7 chr1 243210029 243210392 -38983272 - LTR7 LTR ERV1 -2 448 1 2491 109 14 12 chr1 243210400 243210814 -38982850 - HERVH LTR ERV1 -16 7697 7283 6749 108 6 1 chr1 243210818 243211851 -38981813 - HERVH LTR ERV1 -2693 5020 3993 2158 123 35 3 chr1 243211862 243212229 -38981435 - HERVH LTR ERV1 -3978 3735 3357 13027 112 3 21 chr1 243212229 243214799 -38978865 - HERVH LTR ERV1 -4883 2830 1 1866 91 104 8 chr1 243214801 243215161 -38978503 - LTR7 LTR ERV1 -2 448 1 1899 137 3 28 chr1 243215283 243215596 -38978068 - AluSx SINE Alu 0 310 5 23 33 0 0 chr1 243215967 243215997 -38977667 + AT_rich Low_complexity Low_complexity 1 30 0 1902 110 4 8 chr1 243217424 243217687 -38975977 - AluSq SINE Alu -6 307 46 205 216 34 102 chr1 243218776 243218864 -38974800 + MIR SINE MIR 136 217 -45 357 253 40 0 chr1 243219208 243219307 -38974357 + MER7A DNA MER2_type 1 101 -245 636 132 174 0 chr1 243219310 243219431 -38974233 - AluJb SINE Alu -3 309 168 1306 119 150 0 chr1 243219431 243219658 -38974006 + MER7A DNA MER2_type 85 345 -1 872 241 69 25 chr1 243219959 243220204 -38973460 + MIR SINE MIR 7 262 0 2566 69 0 0 chr1 243220466 243220772 -38972892 + AluY SINE Alu 1 306 -5 551 242 27 20 chr1 243221211 243221360 -38972304 + MIR SINE MIR 102 251 -11 2499 7 3 3 chr1 243222287 243222569 -38971095 - AluYa5 SINE Alu -29 282 1 933 266 40 4 chr1 243222594 243222816 -38970848 - MLT1I LTR MaLR -67 342 113 604 223 112 20 chr1 243222816 243223013 -38970651 - MER58C DNA MER1_type 0 215 1 22 0 0 0 chr1 243223302 243223324 -38970340 + AT_rich Low_complexity Low_complexity 1 22 0 459 258 94 70 chr1 243223863 243224308 -38969356 + HAL1 LINE L1 657 1112 -1395 1033 177 16 0 chr1 243224321 243224513 -38969151 + MER58A DNA MER1_type 27 221 -3 614 235 126 40 chr1 243224532 243224961 -38968703 + HAL1 LINE L1 1113 1578 -929 355 189 21 53 chr1 243224968 243225063 -38968601 - MIR SINE MIR -50 212 121 2094 153 35 0 chr1 243225349 243225716 -38967948 - L1PA16 LINE L1 -1 6165 5786 278 271 17 25 chr1 243225901 243226019 -38967645 + MLT2E LTR ERVL 509 625 -3 2026 141 0 0 chr1 243226212 243226511 -38967153 + AluSc SINE Alu 1 299 -10 607 286 132 9 chr1 243226543 243226756 -38966908 - MIR SINE MIR -21 241 3 267 245 31 0 chr1 243227684 243227771 -38965893 - MLT1L LTR MaLR -331 180 108 25 0 0 0 chr1 243227998 243228023 -38965641 + AT_rich Low_complexity Low_complexity 1 25 0 2126 88 7 14 chr1 243228033 243228330 -38965334 + AluSq SINE Alu 1 295 -18 2024 147 0 13 chr1 243228380 243228680 -38964984 + AluJo SINE Alu 1 296 -16 382 360 34 11 chr1 243228946 243229124 -38964540 + MER5A DNA MER1_type 8 189 0 246 254 0 0 chr1 243229443 243229506 -38964158 - MLT1K LTR MaLR 0 588 526 338 251 158 29 chr1 243229653 243229869 -38963795 - MLT1K LTR MaLR -358 230 2 394 286 121 14 chr1 243230085 243230225 -38963439 - MER5B DNA MER1_type 0 178 24 21 0 0 0 chr1 243230539 243230560 -38963104 + AT_rich Low_complexity Low_complexity 1 21 0 276 258 0 0 chr1 243231396 243231462 -38962202 + MIR SINE MIR 193 258 -4 794 242 79 9 chr1 243231837 243232064 -38961600 - L1MC4 LINE L1 -1350 6692 6450 803 49 0 0 chr1 243232681 243232783 -38960881 - L1PA13 LINE L1 -3 6160 6059 333 0 0 0 chr1 243232857 243232894 -38960770 + (TG)n Simple_repeat Simple_repeat 2 38 0 853 187 37 27 chr1 243234148 243234335 -38959329 - LTR24 LTR ERV1 -43 424 236 227 152 0 0 chr1 243234354 243234410 -38959254 - Alu SINE Alu 0 305 250 1900 138 0 14 chr1 243234410 243234692 -38958972 - AluJb SINE Alu -30 282 5 2544 259 40 20 chr1 243235076 243235261 -38958403 - L1MEc LINE L1 -5026 1370 1190 2030 161 0 3 chr1 243235261 243235571 -38958093 - AluSx SINE Alu -3 309 1 2544 259 40 20 chr1 243235571 243236285 -38957379 - L1MEc LINE L1 -5206 1190 453 517 319 94 46 chr1 243236846 243237326 -38956338 - L2 LINE L2 -2285 1029 527 299 310 10 107 chr1 243237752 243237949 -38955715 + MIR3 SINE MIR 16 193 -15 2380 90 7 0 chr1 243237967 243238268 -38955396 - AluSq SINE Alu -10 303 1 26 50 0 0 chr1 243238270 243238310 -38955354 + AT_rich Low_complexity Low_complexity 1 40 0 2657 99 6 3 chr1 243238374 243238737 -38954927 - THE1B LTR MaLR 0 364 1 1389 137 120 96 chr1 243239366 243239658 -38954006 - AluSg SINE Alu -11 299 1 4308 151 58 4 chr1 243239772 243240578 -38953086 - L1MB7 LINE L1 -18 6166 5317 4326 207 36 39 chr1 243240608 243241802 -38951862 - L1MB7 LINE L1 -790 5356 4166 2209 311 167 23 chr1 243241832 243242693 -38950971 - L1M4 LINE L1 -5549 993 9 392 314 26 20 chr1 243244161 243244314 -38949350 - MIR SINE MIR -103 159 6 229 331 180 0 chr1 243244587 243244726 -38948938 - MIR SINE MIR -97 165 2 34 24 0 0 chr1 243244764 243244805 -38948859 + AT_rich Low_complexity Low_complexity 1 41 0 36 62 0 0 chr1 243244904 243244968 -38948696 + AT_rich Low_complexity Low_complexity 1 64 0 536 263 51 15 chr1 243245672 243245809 -38947855 - L2 LINE L2 -5 3267 3126 2195 106 17 0 chr1 243246273 243246566 -38947098 + AluSx SINE Alu 1 298 -14 381 135 11 73 chr1 243246919 243247097 -38946567 + (TA)n Simple_repeat Simple_repeat 2 168 0 442 254 93 93 chr1 243247143 243247477 -38946187 + L1MEd LINE L1 1025 1358 -5172 254 265 0 0 chr1 243247717 243247785 -38945879 + L1MEd LINE L1 1768 1835 -4705 1166 307 40 29 chr1 243247798 243248251 -38945413 - L2 LINE L2 -33 3280 2823 2560 40 0 3 chr1 243248444 243248741 -38944923 + AluY SINE Alu 1 296 -15 409 318 80 23 chr1 243248742 243249182 -38944482 + L1MEd LINE L1 3698 4162 -2378 2256 113 0 0 chr1 243249398 243249699 -38943965 - AluSx SINE Alu -10 302 2 328 270 24 32 chr1 243250375 243250501 -38943163 + MLT1K LTR MaLR 353 477 -111 572 219 8 0 chr1 243251611 243251730 -38941934 - FLAM_A SINE Alu -9 124 5 295 212 79 111 chr1 243252789 243252978 -38940686 - L1ME3A LINE L1 -23 6147 5965 968 256 221 4 chr1 243253092 243253549 -38940115 - L1ME3A LINE L1 -215 5947 5392 681 246 168 43 chr1 243253552 243254081 -38939583 - L1ME3A LINE L1 -1525 4621 4027 651 238 73 82 chr1 243254083 243254386 -38939278 - L1ME3A LINE L1 -2375 3771 3472 954 114 0 27 chr1 243254456 243254605 -38939059 + MER1B DNA MER1_type 1 145 -152 523 145 0 0 chr1 243254606 243254682 -38938982 + MER1B DNA MER1_type 258 333 0 421 223 60 33 chr1 243254685 243254869 -38938795 - L1ME3A LINE L1 -2750 3396 3208 277 233 198 35 chr1 243254895 243255153 -38938511 - L1ME3A LINE L1 -3252 2894 2595 2157 120 10 3 chr1 243256407 243256716 -38936948 - AluSq SINE Alu -2 311 1 227 313 220 86 chr1 243257907 243258220 -38935444 + L2 LINE L2 2918 3272 0 2271 116 7 0 chr1 243258496 243258806 -38934858 - AluSx SINE Alu 0 312 1 1744 153 46 0 chr1 243258892 243259174 -38934490 - AluSx SINE Alu -17 295 1 1746 149 42 101 chr1 243260662 243261158 -38932506 - Charlie1b DNA MER1_type -18 505 39 193 311 0 0 chr1 243261254 243261299 -38932365 + L2 LINE L2 3211 3255 -17 2178 107 0 3 chr1 243263935 243264233 -38929431 - AluSc SINE Alu -12 297 1 23 68 0 0 chr1 243264316 243264360 -38929304 + AT_rich Low_complexity Low_complexity 1 44 0 2771 23 0 0 chr1 243264656 243264963 -38928701 + AluY SINE Alu 1 307 -4 1678 169 7 27 chr1 243265375 243265676 -38927988 - AluJb SINE Alu -16 296 2 245 167 0 0 chr1 243265769 243265811 -38927853 - MER106A DNA MER1_type 0 236 195 31 44 0 0 chr1 243265819 243265864 -38927800 + AT_rich Low_complexity Low_complexity 1 45 0 418 138 0 221 chr1 243265876 243266021 -38927643 + L1PA16 LINE L1 6038 6150 -16 574 236 19 32 chr1 243266025 243266182 -38927482 - MER106B DNA MER1_type -903 156 2 606 313 36 3 chr1 243266486 243266844 -38926820 - L1ME3A LINE L1 -3576 2570 2201 2167 120 10 3 chr1 243268187 243268496 -38925168 - AluSq SINE Alu -2 311 1 23 54 0 0 chr1 243318790 243318827 -38874837 + AT_rich Low_complexity Low_complexity 1 37 0 545 231 38 56 chr1 243318985 243319150 -38874514 + MLT1J1 LTR MaLR 1 157 -252 1800 166 3 3 chr1 243319150 243319445 -38874219 - AluJo SINE Alu -17 295 1 545 231 38 56 chr1 243319445 243319466 -38874198 + MLT1J1 LTR MaLR 157 177 -232 1075 175 0 0 chr1 243319472 243319643 -38874021 + AluJb SINE Alu 137 307 -5 371 268 135 65 chr1 243319658 243319894 -38873770 + MLT1J2 LTR MaLR 189 497 -14 1568 171 39 30 chr1 243320625 243320930 -38872734 + AluJo SINE Alu 1 308 -4 1177 234 130 23 chr1 243321220 243321604 -38872060 + MLT1J2 LTR MaLR 18 442 -8 2263 110 3 0 chr1 243322189 243322490 -38871174 - AluSx SINE Alu -10 302 1 264 267 209 9 chr1 243322707 243322812 -38870852 + L2 LINE L2 3184 3309 -4 2046 160 25 27 chr1 243323171 243323578 -38870086 - L1MC3 LINE L1 0 7785 7380 231 189 167 22 chr1 243323696 243323786 -38869878 - Tigger7 DNA MER2_type -322 411 309 21 57 0 0 chr1 243323798 243323833 -38869831 + AT_rich Low_complexity Low_complexity 1 35 0 339 374 43 7 chr1 243324507 243324646 -38869018 - L2 LINE L2 -4 3268 3125 201 376 64 13 chr1 243324909 243325066 -38868598 - L2 LINE L2 -433 2881 2717 1374 202 145 9 chr1 243325216 243325547 -38868117 - MLT1G1 LTR MaLR -219 376 1 411 246 72 91 chr1 243325547 243325823 -38867841 - MLT1G1-int LTR MaLR 0 1371 1101 1518 152 87 36 chr1 243326258 243326534 -38867130 + AluJb SINE Alu 1 290 -22 334 341 80 19 chr1 243326733 243326997 -38866667 - MLT1G1-int LTR MaLR -820 551 272 * 522 233 13 40 chr1 243326975 243327125 -38866539 - MLT1G1-int LTR MaLR -1225 146 1 1058 273 109 9 chr1 243327125 243327569 -38866095 - MLT1G1 LTR MaLR 0 530 27 207 274 0 83 chr1 243328372 243328456 -38865208 - MER5A DNA MER1_type -2 187 111 348 87 0 0 chr1 243328738 243328784 -38864880 + Alu SINE Alu 1 46 -255 363 283 0 72 chr1 243329111 243329249 -38864415 - MLT1-int LTR MaLR -830 541 414 1540 151 146 67 chr1 243329307 243329724 -38863940 + LTR7 LTR ERV1 1 450 0 4276 166 68 51 chr1 243329724 243330948 -38862716 + HERVH LTR ERV1 1 1557 -6156 1980 158 0 0 chr1 243331396 243331693 -38861971 + AluJb SINE Alu 1 297 -15 2212 122 0 0 chr1 243332582 243332893 -38860771 - AluSx SINE Alu -1 311 1 23 0 0 0 chr1 243333717 243333740 -38859924 + GC_rich Low_complexity Low_complexity 1 23 0 2065 114 17 7 chr1 243333831 243334128 -38859536 + AluSx SINE Alu 1 300 -12 403 354 118 4 chr1 243334143 243334406 -38859258 - L2 LINE L2 -797 2517 2225 211 146 24 0 chr1 243334717 243334758 -38858906 + T-rich Low_complexity Low_complexity 6 47 0 2494 78 0 0 chr1 243334830 243335139 -38858525 + AluY SINE Alu 1 309 -2 583 272 55 30 chr1 243335178 243335413 -38858251 + MARNA DNA Mariner 24 264 -322 339 244 19 64 chr1 243335413 243335569 -38858095 - L1MC5 LINE L1 -30 7931 7783 1204 220 100 8 chr1 243335627 243335986 -38857678 - L1ME2 LINE L1 -16 6148 5757 403 209 11 11 chr1 243335986 243336077 -38857587 - MLT1G1 LTR MaLR 0 595 505 2431 148 38 25 chr1 243336178 243336624 -38857040 + HERVH LTR ERV1 2544 2995 -4718 * 24132 139 5 3 chr1 243336603 243341232 -38852432 + HERVH LTR ERV1 3140 7713 0 1445 167 212 21 chr1 243341232 243341610 -38852054 + LTR7 LTR ERV1 1 450 0 511 258 132 6 chr1 243341790 243341949 -38851715 - MLT1H1 LTR MaLR 0 590 412 4870 54 20 5 chr1 243341998 243343014 -38850650 - MER11A LTR ERVK 0 1266 1 1221 250 19 8 chr1 243343014 243343263 -38850401 - MLT1H1 LTR MaLR -303 252 1 2363 173 145 32 chr1 243343534 243344070 -38849594 + MLT1E3 LTR MaLR 2 605 -19 1957 189 46 3 chr1 243344070 243344419 -38849245 - MLT1A1 LTR MaLR -1 364 1 2363 173 145 32 chr1 243344419 243344442 -38849222 + MLT1E3 LTR MaLR 605 624 0 255 77 51 0 chr1 243345003 243345042 -38848622 + MLT1E3 LTR MaLR 396 436 -188 225 0 0 0 chr1 243345126 243345151 -38848513 + (TA)n Simple_repeat Simple_repeat 1 25 0 2346 88 3 0 chr1 243345727 243346022 -38847642 - AluSx SINE Alu -16 296 1 400 213 0 0 chr1 243346794 243346886 -38846778 + L1M4 LINE L1 2384 2475 -3671 452 302 22 0 chr1 243346907 243347046 -38846618 - L1ME2 LINE L1 -492 5629 5488 21 0 0 0 chr1 243347130 243347151 -38846513 + AT_rich Low_complexity Low_complexity 1 21 0 186 133 0 0 chr1 243347279 243347309 -38846355 + (TG)n Simple_repeat Simple_repeat 1 30 0 1573 182 25 14 chr1 243347388 243347674 -38845990 - AluJb SINE Alu -23 289 1 256 312 92 9 chr1 243347689 243347798 -38845866 + L2 LINE L2 3141 3258 -14 200 200 0 0 chr1 243347800 243347840 -38845824 + GA-rich Low_complexity Low_complexity 1 40 0 1331 151 91 17 chr1 243347975 243348207 -38845457 + AluSg SINE Alu 1 249 -61 586 241 54 24 chr1 243348639 243348805 -38844859 - MIR3 SINE MIR -7 201 31 260 282 92 14 chr1 243349889 243349904 -38843760 - L1MA10 LINE L1 0 6334 6320 3293 204 39 45 chr1 243349904 243350219 -38843445 - L1ME1 LINE L1 -9 6157 5842 2209 116 0 0 chr1 243350219 243350512 -38843152 - AluSc SINE Alu -16 293 1 3293 204 39 45 chr1 243350512 243351022 -38842642 - L1ME1 LINE L1 -324 5842 5330 2053 118 10 26 chr1 243351022 243351328 -38842336 - AluSx SINE Alu -11 301 1 3293 204 39 45 chr1 243351328 243351682 -38841982 - L1ME1 LINE L1 -836 5330 4777 2430 76 0 3 chr1 243351682 243351986 -38841678 - AluY SINE Alu -8 303 1 3293 204 39 45 chr1 243351986 243352062 -38841602 - L1ME1 LINE L1 -1389 4777 4702 1599 148 53 40 chr1 243352145 243352156 -38841508 + THE1C LTR MaLR 36 45 -330 2063 148 0 0 chr1 243352156 243352467 -38841197 + AluSx SINE Alu 1 311 -1 1599 148 53 40 chr1 243352467 243352792 -38840872 + THE1C LTR MaLR 45 375 0 1724 162 61 35 chr1 243352946 243353302 -38840362 + L1ME1 LINE L1 5579 5867 -299 1607 164 25 14 chr1 243353302 243353577 -38840087 + AluJb SINE Alu 1 278 -34 1724 162 61 35 chr1 243353577 243353634 -38840030 + L1ME1 LINE L1 5867 5921 -245 745 129 19 13 chr1 243353646 243353801 -38839863 + GA-rich Low_complexity Low_complexity 2 157 0 795 234 52 13 chr1 243353801 243354032 -38839632 + L1MB8 LINE L1 5936 6175 -3 385 276 153 15 chr1 243354221 243354424 -38839240 + MIR SINE MIR 2 232 -30 1035 150 49 64 chr1 243354656 243354873 -38838791 + LTR62 LTR ERVK 1 220 -499 2293 44 4 0 chr1 243354873 243355145 -38838519 + AluY SINE Alu 39 311 0 1035 150 49 64 chr1 243355145 243355252 -38838412 + LTR62 LTR ERVK 220 327 -392 3007 108 21 5 chr1 243355252 243355679 -38837985 + MER57B LTR ERV1 1 434 0 1035 150 49 64 chr1 243355679 243355779 -38837885 + LTR62 LTR ERVK 327 466 -253 863 153 0 0 chr1 243355779 243355910 -38837754 - FLAM_C SINE Alu -12 131 1 1219 213 43 8 chr1 243355911 243356146 -38837518 + LTR62 LTR ERVK 456 698 -21 3734 124 56 15 chr1 243356336 243356943 -38836721 + MER39B LTR ERV1 22 653 0 34 84 0 0 chr1 243357181 243357264 -38836400 + AT_rich Low_complexity Low_complexity 1 83 0 660 312 41 35 chr1 243357926 243358266 -38835398 + HAL1 LINE L1 1 342 -2165 1195 76 0 0 chr1 243358269 243358413 -38835251 + AluSq/x SINE Alu 1 144 -168 1937 152 0 3 chr1 243358414 243358717 -38834947 + AluSx SINE Alu 1 302 -10 1026 292 102 28 chr1 243358718 243358982 -38834682 + HAL1 LINE L1 334 577 -1930 2296 231 46 38 chr1 243358982 243359587 -38834077 + LTR9 LTR ERV1 1 610 -2 1026 292 102 28 chr1 243359587 243359784 -38833880 + HAL1 LINE L1 577 829 -1678 * 1507 239 78 30 chr1 243359779 243360319 -38833345 + HAL1 LINE L1 1089 1654 -853 473 252 4 142 chr1 243360339 243360396 -38833268 - LTR41 LTR ERVL -38 735 672 1812 172 0 7 chr1 243360396 243360686 -38832978 - AluJb SINE Alu -24 288 1 473 252 4 142 chr1 243360686 243360902 -38832762 - LTR41 LTR ERVL -101 672 500 765 186 98 55 chr1 243361101 243361284 -38832380 - LTR41 LTR ERVL -582 191 1 1774 246 48 96 chr1 243361284 243361554 -38832110 + HAL1 LINE L1 1649 1930 -577 501 115 0 0 chr1 243361554 243361632 -38832032 + (TG)n Simple_repeat Simple_repeat 1 78 0 1774 246 48 96 chr1 243361632 243362259 -38831405 + HAL1 LINE L1 1930 2503 -4 1905 141 10 13 chr1 243362570 243362691 -38830973 + AluJb SINE Alu 1 121 -438 243 0 0 0 chr1 243362691 243362718 -38830946 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1905 141 10 13 chr1 243362718 243362933 -38830731 + AluJb SINE Alu 121 335 -224 1286 28 17 17 chr1 243362933 243363113 -38830551 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1905 141 10 13 chr1 243363113 243363156 -38830508 + AluJb SINE Alu 335 559 0 942 180 48 0 chr1 243363358 243363525 -38830139 + MLT1C LTR MaLR 1 175 -292 2046 149 7 0 chr1 243363679 243363981 -38829683 + AluSx SINE Alu 6 309 -3 1167 123 113 30 chr1 243364681 243364884 -38828780 - AluJo SINE Alu -7 305 86 1490 225 35 6 chr1 243364889 243365236 -38828428 - Charlie4a DNA MER1_type 0 508 152 202 200 0 0 chr1 243365308 243365331 -38828333 + (TTAA)n Simple_repeat Simple_repeat 3 25 -22 1911 120 47 0 chr1 243365331 243365607 -38828057 - AluSx SINE Alu -23 289 1 202 200 0 0 chr1 243365607 243365628 -38828036 + (TTAA)n Simple_repeat Simple_repeat 24 47 0 940 134 89 6 chr1 243366053 243366232 -38827432 - L1MC2 LINE L1 -14 6330 6137 1707 149 70 72 chr1 243366232 243366626 -38827038 - L1MC3 LINE L1 -190 7595 7201 189 356 0 17 chr1 243366688 243366747 -38826917 - L3 LINE CR1 -7 1570 1513 1849 162 7 0 chr1 243366809 243367093 -38826571 + AluJb SINE Alu 1 286 -26 536 296 124 22 chr1 243367358 243367584 -38826080 + MIR SINE MIR 14 262 0 315 104 0 0 chr1 243369130 243369178 -38824486 + (TC)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr1 243369676 243369712 -38823952 + AT_rich Low_complexity Low_complexity 1 36 0 817 266 0 0 chr1 243369907 243370061 -38823603 + FRAM SINE Alu 1 154 -12 29 28 0 0 chr1 243370061 243370097 -38823567 + AT_rich Low_complexity Low_complexity 1 36 0 1933 193 115 5 chr1 243370416 243370800 -38822864 + MSTB LTR MaLR 1 426 0 1530 176 3 31 chr1 243370852 243371142 -38822522 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr1 243371621 243371643 -38822021 + AT_rich Low_complexity Low_complexity 1 22 0 307 288 152 42 chr1 243371894 243372085 -38821579 + L2 LINE L2 2273 2484 -830 324 270 24 8 chr1 243372352 243372478 -38821186 + (TTATA)n Simple_repeat Simple_repeat 2 129 0 290 342 45 59 chr1 243372547 243372904 -38820760 + L2 LINE L2 2917 3268 -4 3234 243 112 26 chr1 243373355 243374066 -38819598 - L2 LINE L2 -1 3312 2664 2107 116 0 20 chr1 243374066 243374368 -38819296 - AluSc SINE Alu -13 296 1 3234 243 112 26 chr1 243374368 243375057 -38818607 - L2 LINE L2 -649 2664 1802 2198 92 9 22 chr1 243375085 243375401 -38818263 - AluSx SINE Alu 0 312 1 276 30 0 0 chr1 243375666 243375699 -38817965 + (CA)n Simple_repeat Simple_repeat 1 33 0 221 299 13 38 chr1 243377810 243377967 -38815697 + G-rich Low_complexity Low_complexity 4 156 0 * 274 268 24 0 chr1 243377886 243377968 -38815696 + GA-rich Low_complexity Low_complexity 1 84 0 26 50 0 0 chr1 243378382 243378422 -38815242 + GC_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 243379349 243379371 -38814293 + AT_rich Low_complexity Low_complexity 1 22 0 303 242 98 65 chr1 243379603 243379756 -38813908 + L1MDb LINE L1 599 756 -5653 964 76 61 0 chr1 243383940 243384071 -38809593 - MER85 DNA T2_type 0 139 1 26 50 0 0 chr1 243384509 243384549 -38809115 + AT_rich Low_complexity Low_complexity 1 40 0 570 197 99 84 chr1 243386380 243386593 -38807071 - L1ME3A LINE L1 -19 6151 5936 201 196 0 0 chr1 243386867 243386913 -38806751 + T-rich Low_complexity Low_complexity 1 46 0 224 170 19 0 chr1 243387280 243387333 -38806331 + CT-rich Low_complexity Low_complexity 3 56 0 198 0 0 0 chr1 243388458 243388480 -38805184 + (A)n Simple_repeat Simple_repeat 1 22 0 23 78 0 0 chr1 243389435 243389486 -38804178 + AT_rich Low_complexity Low_complexity 1 51 0 804 217 40 49 chr1 243393185 243393411 -38800253 + MIR SINE MIR 3 226 -36 1904 125 3 26 chr1 243394016 243394329 -38799335 + AluSx SINE Alu 1 306 -6 484 133 13 0 chr1 243395300 243395375 -38798289 + AluJ/FLAM SINE Alu 2 77 -235 850 162 6 46 chr1 243395380 243395553 -38798111 + AluSg/x SINE Alu 146 311 -1 629 276 36 36 chr1 243395683 243395879 -38797785 + MIR3 SINE MIR 13 208 0 21 0 0 0 chr1 243396394 243396415 -38797249 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 243396868 243396890 -38796774 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 243396992 243397015 -38796649 + GC_rich Low_complexity Low_complexity 1 23 0 218 341 0 0 chr1 243397168 243397291 -38796373 + (TG)n Simple_repeat Simple_repeat 1 123 0 315 285 35 29 chr1 243397401 243397573 -38796091 - MER5B DNA MER1_type -5 173 1 226 331 192 17 chr1 243397756 243397928 -38795736 - MIR SINE MIR -55 207 6 237 322 44 0 chr1 243398610 243398700 -38794964 - MIR3 SINE MIR -34 174 81 433 319 145 14 chr1 243400059 243400266 -38793398 + MIR SINE MIR 2 235 -27 472 152 36 62 chr1 243401914 243402026 -38791638 - MER33 DNA MER1_type 0 324 216 1497 160 4 4 chr1 243402028 243402278 -38791386 + AluJo SINE Alu 1 250 -62 952 109 0 36 chr1 243402280 243402418 -38791246 - AluJo/FLAM SINE Alu -169 133 1 1135 135 15 58 chr1 243402429 243402689 -38790975 - MER33 DNA MER1_type -69 255 7 345 264 160 56 chr1 243403877 243404021 -38789643 - MIR SINE MIR -76 186 28 1855 148 17 0 chr1 243404236 243404527 -38789137 - AluSx SINE Alu -16 296 1 1684 135 3 50 chr1 243404537 243404834 -38788830 - AluSx SINE Alu -19 293 11 374 236 72 5 chr1 243404898 243405013 -38788651 - MIR3 SINE MIR -48 160 40 1795 139 0 7 chr1 243406064 243406337 -38787327 - AluJb SINE Alu -21 291 21 255 237 21 21 chr1 243406391 243406484 -38787180 + (TA)n Simple_repeat Simple_repeat 1 93 0 189 0 0 0 chr1 243406586 243406607 -38787057 + (CA)n Simple_repeat Simple_repeat 2 22 0 495 232 80 16 chr1 243406634 243406759 -38786905 - MER94 DNA DNA -1 133 1 186 103 0 0 chr1 243408455 243408484 -38785180 + (TG)n Simple_repeat Simple_repeat 2 30 0 330 278 73 47 chr1 243408791 243408982 -38784682 + L2 LINE L2 3110 3305 -8 252 86 0 0 chr1 243408983 243409018 -38784646 + (TGGA)n Simple_repeat Simple_repeat 4 38 0 560 218 168 61 chr1 243409384 243409446 -38784218 - MLT1L LTR MaLR 0 615 561 1188 129 13 77 chr1 243409446 243409679 -38783985 + MER20 DNA MER1_type 2 219 0 560 218 168 61 chr1 243409679 243409980 -38783684 - MLT1L LTR MaLR -54 561 151 231 221 257 80 chr1 243410214 243410327 -38783337 - L2 LINE L2 -1 3271 3139 249 366 111 21 chr1 243410439 243410674 -38782990 - L2 LINE L2 -213 3059 2804 2288 62 0 0 chr1 243411544 243411857 -38781807 + AluY SINE Alu 2 311 0 1317 81 0 0 chr1 243411857 243412031 -38781633 + AluY SINE Alu 133 306 -5 1262 101 0 0 chr1 243412687 243412856 -38780808 - AluSg/x SINE Alu -13 297 129 1209 279 39 49 chr1 243412862 243413026 -38780638 - L2 LINE L2 -615 2699 2535 2102 130 3 0 chr1 243413026 243413334 -38780330 + AluSx SINE Alu 1 309 -3 1209 279 39 49 chr1 243413334 243413661 -38780003 - L2 LINE L2 -779 2535 2213 1397 250 104 44 chr1 243413661 243413851 -38779813 - MLT1G1 LTR MaLR 0 593 416 2106 96 0 43 chr1 243413851 243414196 -38779468 - AluSg SINE Alu 0 310 1 1397 250 104 44 chr1 243414196 243414558 -38779106 - MLT1G1 LTR MaLR -177 416 1 297 287 96 19 chr1 243414594 243414751 -38778913 - L2 LINE L2 -1143 2171 2003 350 270 44 95 chr1 243414753 243414890 -38778774 - L2 LINE L2 0 3313 3184 290 254 136 45 chr1 243414893 243414990 -38778674 - L2 LINE L2 -1360 1954 1867 1810 167 0 7 chr1 243414990 243415290 -38778374 + AluJo SINE Alu 1 298 -14 290 254 136 45 chr1 243415290 243415369 -38778295 - L2 LINE L2 -1447 1867 1762 239 242 0 16 chr1 243416425 243416487 -38777177 + MIR SINE MIR 68 128 -134 677 202 65 18 chr1 243416492 243416660 -38777004 - AluJo SINE Alu -17 295 120 808 142 0 0 chr1 243416687 243416807 -38776857 + FLAM_C SINE Alu 1 120 -23 198 0 0 0 chr1 243416807 243416829 -38776835 + (TAA)n Simple_repeat Simple_repeat 2 23 0 193 256 0 0 chr1 243416829 243416872 -38776792 + MIR SINE MIR 158 200 -62 2626 182 61 4 chr1 243416896 243417386 -38776278 - MER82 DNA MER2_type -25 628 111 320 153 276 61 chr1 243418617 243418656 -38775008 - MIR SINE MIR -28 234 205 6303 114 70 67 chr1 243418656 243419465 -38774199 - Tigger3b DNA MER2_type -1797 1231 415 1820 173 0 3 chr1 243419465 243419778 -38773886 - AluJb SINE Alu 0 312 1 6303 114 70 67 chr1 243419778 243420194 -38773470 - Tigger3b DNA MER2_type -2613 415 2 320 153 276 61 chr1 243420194 243420252 -38773412 - MIR SINE MIR -57 205 116 185 250 94 31 chr1 243420261 243420325 -38773339 + MIR3 SINE MIR 115 182 -26 1595 149 3 60 chr1 243420363 243420664 -38773000 + AluJb SINE Alu 14 297 -15 973 237 5 0 chr1 243420793 243420991 -38772673 - MER58A DNA MER1_type -7 217 19 839 127 0 0 chr1 243421344 243421462 -38772202 - MLT1B LTR MaLR 0 390 273 1725 174 0 7 chr1 243421462 243421750 -38771914 + AluJo SINE Alu 1 286 -26 1421 162 0 4 chr1 243421765 243421999 -38771665 + AluSx SINE Alu 1 233 -79 207 0 0 0 chr1 243422028 243422051 -38771613 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1554 170 21 14 chr1 243422051 243422148 -38771516 - MLT1B LTR MaLR -106 284 189 2053 153 55 3 chr1 243422148 243422495 -38771169 + MLT1A1 LTR MaLR 1 365 0 1554 170 21 14 chr1 243422495 243422679 -38770985 - MLT1B LTR MaLR -201 189 1 248 205 13 44 chr1 243422681 243422759 -38770905 - MIR SINE MIR -68 140 70 1479 212 27 35 chr1 243422772 243422865 -38770799 - L1ME2 LINE L1 -314 5850 5758 2004 136 0 7 chr1 243422865 243423175 -38770489 - AluSq SINE Alu -5 308 1 1479 212 27 35 chr1 243423175 243423449 -38770215 - L1ME2 LINE L1 -406 5758 5486 441 0 0 0 chr1 243423477 243423526 -38770138 + (TG)n Simple_repeat Simple_repeat 1 49 0 572 172 14 28 chr1 243423580 243423725 -38769939 + L1M4 LINE L1 69 211 -6648 508 151 11 0 chr1 243423724 243423817 -38769847 + L1M4 LINE L1 5418 5511 -1446 * 434 145 0 0 chr1 243423822 243423884 -38769780 + AluS SINE Alu 2 63 -250 3684 104 2 0 chr1 243423891 243424393 -38769271 + MER41B LTR ERV1 133 635 0 3709 145 15 7 chr1 243424794 243425380 -38768284 - LTR59 LTR ERV1 -6 591 1 3927 107 19 26 chr1 243425728 243426301 -38767363 + MER61E LTR ERV1 1 569 0 751 186 0 14 chr1 243426743 243426883 -38766781 + Charlie4 DNA MER1_type 1818 1955 -6 210 245 0 20 chr1 243426897 243426946 -38766718 + CT-rich Low_complexity Low_complexity 5 52 0 1174 253 89 71 chr1 243427774 243428269 -38765395 + MLT1J LTR MaLR 1 504 -7 2672 117 47 43 chr1 243428387 243428758 -38764906 - MER83 LTR ERV1 0 448 73 2242 113 3 0 chr1 243428758 243429067 -38764597 - AluSx SINE Alu -2 310 1 2672 117 47 43 chr1 243429067 243429141 -38764523 - MER83 LTR ERV1 -375 73 1 450 225 11 121 chr1 243429302 243429484 -38764180 - MIR SINE MIR -8 254 93 1106 210 44 4 chr1 243429560 243429812 -38763852 + AluJo SINE Alu 48 309 -3 587 124 0 9 chr1 243429812 243429917 -38763747 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 287 309 105 20 chr1 243430695 243430847 -38762817 + LTR67 LTR ERVL 22 186 -371 221 265 174 0 chr1 243431545 243431643 -38762021 - L2 LINE L2 0 3313 3199 565 44 0 111 chr1 243432094 243432144 -38761520 - MADE1 DNA Mariner 0 80 43 2110 78 16 33 chr1 243432144 243432451 -38761213 + AluSx SINE Alu 1 302 -10 565 44 0 111 chr1 243432451 243432490 -38761174 - MADE1 DNA Mariner -37 43 1 497 237 37 7 chr1 243432536 243432671 -38760993 + L2 LINE L2 3175 3313 0 2114 116 7 0 chr1 243432694 243432995 -38760669 + AluSq SINE Alu 1 303 -10 1588 163 13 42 chr1 243433006 243433312 -38760352 + AluJo SINE Alu 1 297 -15 830 241 73 49 chr1 243433312 243433598 -38760066 - L2 LINE L2 -618 2696 2404 966 260 76 30 chr1 243433599 243433995 -38759669 - L2 LINE L2 -350 2964 2551 706 263 152 40 chr1 243434004 243434380 -38759284 + L2 LINE L2 2895 3312 -1 1979 125 3 3 chr1 243434527 243434822 -38758842 - AluJo SINE Alu -17 295 1 22 35 0 0 chr1 243434931 243434960 -38758704 + AT_rich Low_complexity Low_complexity 1 29 0 323 311 53 47 chr1 243435279 243435469 -38758195 - L1MC4a LINE L1 -1913 5895 5705 328 333 65 0 chr1 243435479 243435602 -38758062 - MIR3 SINE MIR -2 206 76 273 348 114 25 chr1 243435596 243435803 -38757861 - MIR3 SINE MIR -29 233 15 * 405 317 123 26 chr1 243435988 243436215 -38757449 + MIR SINE MIR 14 262 0 25 31 0 0 chr1 243437897 243437929 -38755735 + GC_rich Low_complexity Low_complexity 1 32 0 363 232 8 56 chr1 243438361 243438486 -38755178 - MIR3 SINE MIR -35 173 55 471 286 94 21 chr1 243439043 243439235 -38754429 + MIR SINE MIR 20 225 -37 1054 161 54 72 chr1 243439240 243439388 -38754276 + ORSL DNA AcHobo 2 144 -131 2088 103 43 0 chr1 243439388 243439669 -38753995 - AluSx SINE Alu -19 293 1 1054 161 54 72 chr1 243439669 243439799 -38753865 + ORSL DNA AcHobo 144 275 0 1713 143 85 0 chr1 243441462 243441734 -38751930 + AluJb SINE Alu 1 295 -17 2459 165 17 55 chr1 243441798 243442272 -38751392 - LTR32 LTR ERVL -1 470 15 203 240 0 0 chr1 243442648 243442698 -38750966 + MER5A DNA MER1_type 133 182 -7 705 246 23 0 chr1 243442713 243442884 -38750780 - MER5A DNA MER1_type 0 189 15 230 275 117 33 chr1 243442889 243443009 -38750655 - MER5B DNA MER1_type -3 175 46 4289 93 6 0 chr1 243443052 243443601 -38750063 + MER41A LTR ERV1 1 552 -2 2935 172 174 45 chr1 243443601 243444333 -38749331 - LTR1B LTR ERV1 0 826 1 274 258 90 34 chr1 243444383 243444472 -38749192 - MIR SINE MIR -122 140 47 2021 157 0 0 chr1 243445408 243445714 -38747950 - AluJb SINE Alu -6 306 1 248 228 0 25 chr1 243446526 243446605 -38747059 + (CATA)n Simple_repeat Simple_repeat 3 79 0 26 0 0 0 chr1 243446612 243446638 -38747026 + AT_rich Low_complexity Low_complexity 1 26 0 1644 148 53 18 chr1 243448691 243448974 -38744690 - AluJb SINE Alu -19 293 1 2040 101 79 7 chr1 243450210 243450487 -38743177 - AluSx SINE Alu -15 297 1 180 97 0 0 chr1 243450942 243450973 -38742691 + (CA)n Simple_repeat Simple_repeat 2 32 0 2266 99 33 0 chr1 243451126 243451428 -38742236 - AluSx SINE Alu 0 312 1 869 168 0 0 chr1 243452191 243452322 -38741342 + AluJb SINE Alu 2 132 -180 1618 177 21 14 chr1 243453607 243453922 -38739742 + AluJb SINE Alu 1 317 0 1429 169 50 30 chr1 243454320 243454631 -38739033 - MLT1C LTR MaLR 0 467 180 225 269 60 20 chr1 243454631 243454780 -38738884 - MLT1D LTR MaLR -270 235 81 1624 120 0 5 chr1 243454790 243455007 -38738657 + AluJb SINE Alu 74 289 -23 25 31 0 0 chr1 243455011 243455043 -38738621 + AT_rich Low_complexity Low_complexity 1 32 0 484 302 29 12 chr1 243455199 243455371 -38738293 + MIR3 SINE MIR 28 202 -6 332 238 95 9 chr1 243456061 243456166 -38737498 + L2 LINE L2 3199 3312 -1 186 43 0 0 chr1 243456482 243456505 -38737159 + (C)n Simple_repeat Simple_repeat 1 23 0 369 0 0 0 chr1 243456524 243456565 -38737099 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 311 19 0 chr1 243457646 243457749 -38735915 + L2 LINE L2 1823 1927 -1387 1731 151 23 23 chr1 243457901 243458205 -38735459 - AluJo SINE Alu -6 306 3 22 35 0 0 chr1 243458216 243458245 -38735419 + AT_rich Low_complexity Low_complexity 1 29 0 1884 164 0 3 chr1 243458287 243458585 -38735079 - AluJb SINE Alu -15 297 1 637 284 70 4 chr1 243459151 243459380 -38734284 + MER112 DNA MER1_type 11 254 -6 1916 140 0 0 chr1 243459697 243460007 -38733657 + AluSx SINE Alu 19 328 0 450 292 14 0 chr1 243460040 243460184 -38733480 - MIR SINE MIR 0 262 117 334 286 25 42 chr1 243460665 243460784 -38732880 - L2 LINE L2 -5 3308 3192 1782 182 0 3 chr1 243461005 243461307 -38732357 + AluJo SINE Alu 1 301 -11 37 23 0 0 chr1 243462499 243462543 -38731121 + AT_rich Low_complexity Low_complexity 1 44 0 881 215 12 0 chr1 243462546 243462718 -38730946 - FAM SINE Alu -1 174 1 23 0 0 0 chr1 243463076 243463099 -38730565 + AT_rich Low_complexity Low_complexity 1 23 0 6192 154 5 12 chr1 243463129 243464376 -38729288 - L1MA3 LINE L1 0 6305 5063 2025 115 3 14 chr1 243464471 243464790 -38728874 + AluSx SINE Alu 1 316 0 2053 153 0 7 chr1 243465424 243465731 -38727933 - AluSx SINE Alu -7 305 1 21 36 0 0 chr1 243465883 243465911 -38727753 + AT_rich Low_complexity Low_complexity 1 28 0 3295 161 36 14 chr1 243467388 243467597 -38726067 + L1MB3 LINE L1 4900 5103 -1080 1876 175 0 9 chr1 243467597 243467729 -38725935 + AluJo SINE Alu 1 133 -179 2380 86 7 7 chr1 243467729 243468031 -38725633 + AluSp SINE Alu 1 302 -11 1876 175 0 9 chr1 243468031 243468213 -38725451 + AluJo SINE Alu 133 312 0 3295 161 36 14 chr1 243468213 243468918 -38724746 + L1MB3 LINE L1 5103 5834 -349 692 112 9 28 chr1 243468927 243469034 -38724630 - MER49 LTR ERV1 -7 916 812 11935 87 31 6 chr1 243469034 243469914 -38723750 - L1M1 LINE L1 -3939 3626 2769 2195 124 20 0 chr1 243469914 243470220 -38723444 - AluSx SINE Alu 0 312 1 11935 87 31 6 chr1 243470220 243471094 -38722570 - L1M1 LINE L1 -4796 2769 1829 1399 152 35 0 chr1 243471101 243471331 -38722333 - L1M1 LINE L1 -7314 251 14 2474 63 0 13 chr1 243471482 243471783 -38721881 - AluY SINE Alu -4 307 11 1516 139 108 16 chr1 243472022 243472280 -38721384 + AluSx SINE Alu 1 282 -30 330 132 0 0 chr1 243472282 243472335 -38721329 + (TA)n Simple_repeat Simple_repeat 2 54 0 244 93 163 0 chr1 243472586 243472629 -38721035 - MER53 DNA DNA 0 189 140 757 150 0 0 chr1 243472667 243472780 -38720884 - AluSq/x SINE Alu -180 133 21 458 148 22 148 chr1 243472802 243472880 -38720784 - MER53 DNA DNA -71 118 62 2142 108 3 0 chr1 243472880 243473168 -38720496 - AluSx SINE Alu -23 289 1 458 148 22 148 chr1 243473168 243473224 -38720440 - MER53 DNA DNA -127 62 1 24 0 0 0 chr1 243474126 243474150 -38719514 + GC_rich Low_complexity Low_complexity 1 24 0 2183 103 7 7 chr1 243475099 243475409 -38718255 - AluSx SINE Alu -1 311 2 239 276 166 35 chr1 243475690 243475835 -38717829 - MIR SINE MIR -49 213 50 10406 82 36 19 chr1 243476072 243476178 -38717486 - Charlie3 DNA MER1_type 0 2706 2603 1757 137 23 49 chr1 243476178 243476485 -38717179 - AluSx SINE Alu -9 303 5 10406 82 36 19 chr1 243476485 243478659 -38715005 - Charlie3 DNA MER1_type -103 2603 294 985 136 0 25 chr1 243478659 243478821 -38714843 + FRAM SINE Alu 1 40 0 963 228 76 70 chr1 243478825 243479024 -38714640 - Charlie4a DNA MER1_type -1614 347 144 1995 152 3 0 chr1 243479024 243479320 -38714344 - AluSx SINE Alu -15 297 1 963 228 76 70 chr1 243479320 243479449 -38714215 - Charlie4a DNA MER1_type -1817 144 17 1640 155 90 0 chr1 243479542 243479819 -38713845 - AluJb SINE Alu -10 302 1 228 35 0 0 chr1 243480041 243480070 -38713594 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1359 262 172 9 chr1 243480105 243480686 -38712978 + L1ME3 LINE L1 3280 3955 -2191 1294 255 123 12 chr1 243480765 243481252 -38712412 + L1ME3 LINE L1 4573 5113 -1033 814 246 31 13 chr1 243481260 243481484 -38712180 + L1ME3 LINE L1 5806 6033 -129 1645 174 7 33 chr1 243481486 243481791 -38711873 - AluJb SINE Alu -15 297 1 1916 163 3 0 chr1 243481865 243482171 -38711493 + AluJo SINE Alu 1 307 -5 2042 196 86 20 chr1 243482732 243483187 -38710477 - MLT1D LTR MaLR -2 503 19 284 261 174 35 chr1 243483322 243483428 -38710236 + L3 LINE CR1 1019 1109 -468 1669 167 32 14 chr1 243483428 243483710 -38709954 + AluJb SINE Alu 1 287 -25 284 261 174 35 chr1 243483710 243483833 -38709831 + L3 LINE CR1 1109 1280 -297 778 255 77 16 chr1 243483886 243484133 -38709531 - MIR SINE MIR 0 262 1 915 117 99 56 chr1 243484266 243484428 -38709236 + FRAM SINE Alu 1 167 -9 1000 263 84 51 chr1 243484731 243485218 -38708446 + MLT1H LTR MaLR 47 549 0 972 140 0 0 chr1 243485421 243485564 -38708100 + AluJb SINE Alu 1 143 -169 410 106 0 0 chr1 243485568 243485634 -38708030 + Alu SINE Alu 247 312 0 834 258 10 5 chr1 243486211 243486420 -38707244 + MIR SINE MIR 3 212 -50 3647 89 16 4 chr1 243488343 243488837 -38704827 + LTR3b LTR ERVK 1 500 0 330 227 136 0 chr1 243489263 243489351 -38704313 - MIR SINE MIR 0 262 163 1019 173 28 33 chr1 243489637 243489851 -38703813 + MER6 DNA MER2_type 21 233 -632 326 347 0 20 chr1 243489855 243490032 -38703632 - PABL_B-int LTR ERV1 -3756 3366 3214 768 261 52 62 chr1 243490102 243490504 -38703160 + LTR38B LTR ERV1 205 602 -8 3793 145 40 8 chr1 243490512 243491140 -38702524 + MER6 DNA MER2_type 218 865 0 1746 148 70 0 chr1 243491165 243491449 -38702215 + AluJb SINE Alu 1 304 -8 1910 127 132 16 chr1 243492278 243492641 -38701023 - L1MA9 LINE L1 -30 6282 5878 202 283 0 0 chr1 243492703 243492749 -38700915 + MIR SINE MIR 157 202 -60 373 269 114 64 chr1 243492984 243493203 -38700461 - MLT1J LTR MaLR -2 509 280 745 186 31 0 chr1 243493462 243493591 -38700073 + FLAM_A SINE Alu 1 133 0 962 135 0 0 chr1 243493631 243493764 -38699900 - FLAM_C SINE Alu 0 133 1 268 269 161 0 chr1 243493890 243493983 -38699681 - L2 LINE L2 -31 3241 3134 314 45 23 0 chr1 243494082 243494126 -38699538 + (TG)n Simple_repeat Simple_repeat 2 46 0 489 217 144 6 chr1 243494835 243495015 -38698649 - MLT1J LTR MaLR -236 275 71 2257 99 7 0 chr1 243495016 243495310 -38698354 - AluSq SINE Alu -13 300 5 265 132 0 0 chr1 243495311 243495349 -38698315 - AluJ SINE Alu -129 173 136 2786 182 62 132 chr1 243495392 243496328 -38697336 - L1M4 LINE L1 -1353 4793 3934 2577 151 109 21 chr1 243496328 243496806 -38696858 - MLT2B1 LTR ERVL 0 520 1 2786 182 62 132 chr1 243496806 243496903 -38696761 - L1M4 LINE L1 -2212 3934 3832 684 257 137 48 chr1 243496929 243497336 -38696328 - MLT1G1 LTR MaLR -94 501 7 278 272 54 54 chr1 243497366 243497458 -38696206 - MIR SINE MIR -72 136 45 2201 119 0 16 chr1 243498296 243498599 -38695065 - AluSx SINE Alu -14 298 1 180 0 0 0 chr1 243498798 243498818 -38694846 + (T)n Simple_repeat Simple_repeat 1 20 0 365 270 63 56 chr1 243498878 243499289 -38694375 - L1M4 LINE L1 -2686 3460 3047 303 349 33 7 chr1 243499286 243499438 -38694226 - L1ME LINE L1 -427 5694 5539 * 1799 127 79 0 chr1 243499559 243499826 -38693838 - AluSg SINE Alu -3 307 20 828 156 0 57 chr1 243499884 243500025 -38693639 - AluJ SINE Alu -169 133 1 225 306 106 47 chr1 243500037 243500634 -38693030 - L1ME LINE L1 -1326 4820 4189 1379 193 52 39 chr1 243501271 243501576 -38692088 - AluJo SINE Alu -3 309 1 1158 231 56 52 chr1 243502635 243502903 -38690761 + MER39 LTR ERV1 67 332 -375 2375 60 3 0 chr1 243502903 243503205 -38690459 + AluY SINE Alu 1 303 0 1158 231 56 52 chr1 243503205 243503369 -38690295 + MER39 LTR ERV1 332 707 0 2319 158 36 87 chr1 243504658 243505001 -38688663 + LTR8 LTR ERV1 211 521 -170 1619 114 12 37 chr1 243505001 243505246 -38688418 + AluSg SINE Alu 61 299 -11 2319 158 36 87 chr1 243505246 243505408 -38688256 + LTR8 LTR ERV1 521 690 -1 2340 106 3 0 chr1 243505661 243505973 -38687691 - AluSp SINE Alu 0 313 1 1170 199 86 17 chr1 243505996 243506298 -38687366 + MER33 DNA MER1_type 1 323 -1 341 304 133 38 chr1 243506975 243507238 -38686426 + L2 LINE L2 2019 2306 -1008 240 329 88 7 chr1 243507280 243507417 -38686247 + L2 LINE L2 3124 3271 -42 1899 134 65 3 chr1 243507596 243507888 -38685776 - AluSg SINE Alu 0 310 1 2147 136 0 3 chr1 243510673 243510981 -38682683 - AluSx SINE Alu -5 307 1 2089 150 0 0 chr1 243510985 243511279 -38682385 - AluSx SINE Alu -18 294 1 1598 169 68 14 chr1 243511297 243511575 -38682089 - AluJo SINE Alu -19 293 1 652 256 19 76 chr1 243511575 243511713 -38681951 - MER20 DNA MER1_type -20 199 76 1639 144 60 30 chr1 243511713 243512011 -38681653 + AluSx SINE Alu 1 307 -5 652 256 19 76 chr1 243512011 243512083 -38681581 - MER20 DNA MER1_type -143 76 1 203 314 132 0 chr1 243512149 243512308 -38681356 + L2 LINE L2 2933 3112 -160 246 298 76 57 chr1 243512314 243512472 -38681192 - L2 LINE L2 -5 3267 3107 226 266 71 88 chr1 243512551 243512664 -38681000 + L2 LINE L2 3158 3268 -45 247 310 19 70 chr1 243512776 243512934 -38680730 - L2 LINE L2 -165 3107 2958 205 292 46 15 chr1 243513578 243513643 -38680021 + MIR SINE MIR 7 73 -189 1779 152 4 0 chr1 243513697 243513954 -38679710 - AluSx SINE Alu -54 258 1 2528 84 0 0 chr1 243514159 243514469 -38679195 + AluSq SINE Alu 1 310 -3 183 260 0 20 chr1 243514601 243514651 -38679013 + L2 LINE L2 365 413 -2901 193 333 56 32 chr1 243514902 243515028 -38678636 - L2 LINE L2 -1 3271 3143 2243 120 3 3 chr1 243515527 243515836 -38677828 - AluSg SINE Alu -1 309 1 2327 106 0 0 chr1 243515974 243516277 -38677387 - AluY SINE Alu -8 303 1 1892 169 10 3 chr1 243516506 243516813 -38676851 - AluSx SINE Alu -3 309 1 241 229 86 29 chr1 243517622 243517692 -38675972 - L2 LINE L2 -192 3080 3007 470 143 0 0 chr1 243518159 243518222 -38675442 - AluJ/FLAM SINE Alu -248 64 2 777 97 18 18 chr1 243519519 243519632 -38674032 - U5 snRNA snRNA -2 114 2 383 220 26 0 chr1 243520033 243520129 -38673535 - L1MD3 LINE L1 -14 7981 6128 1135 162 51 38 chr1 243520131 243520366 -38673298 - L1PA16 LINE L1 0 6166 5929 865 241 118 11 chr1 243520363 243520625 -38673039 - L1MD2 LINE L1 -99 6260 5971 * 921 253 17 17 chr1 243520667 243520963 -38672701 - L1MDa LINE L1 -3691 2849 2554 859 188 38 116 chr1 243520957 243521240 -38672424 - L1MDa LINE L1 -4879 1661 1408 * 1745 132 14 59 chr1 243521240 243521528 -38672136 - AluSx SINE Alu -37 275 1 859 188 38 116 chr1 243521528 243521589 -38672075 - L1MDa LINE L1 -5132 1408 1344 683 247 37 6 chr1 243521662 243521824 -38671840 - L1MDa LINE L1 -6358 182 16 865 148 44 33 chr1 243523899 243524081 -38669583 - L1MA4 LINE L1 -2 6298 6115 219 317 125 50 chr1 243525472 243525592 -38668072 - L2 LINE L2 -6 3266 3138 2159 137 3 0 chr1 243525622 243525928 -38667736 + AluSx SINE Alu 1 307 -5 248 271 84 81 chr1 243526117 243526449 -38667215 - L2 LINE L2 -349 2965 2633 2063 159 0 0 chr1 243526642 243526944 -38666720 - AluSx SINE Alu -10 302 1 407 268 64 32 chr1 243527684 243527841 -38665823 - MIR3 SINE MIR -27 181 20 349 279 72 9 chr1 243528268 243528379 -38665285 + MIR SINE MIR 31 148 -114 2071 122 7 0 chr1 243528421 243528707 -38664957 + AluSx SINE Alu 1 288 -24 2130 152 75 30 chr1 243528757 243529159 -38664505 + L1MC1 LINE L1 5914 6333 0 490 206 33 0 chr1 243529803 243529895 -38663769 + MER5A DNA MER1_type 18 112 -77 245 194 265 20 chr1 243529820 243529918 -38663746 - MER5A DNA MER1_type -23 166 45 * 201 74 0 0 chr1 243530610 243530637 -38663027 + (T)n Simple_repeat Simple_repeat 1 27 0 478 226 184 18 chr1 243531199 243531367 -38662297 - MIR SINE MIR -58 204 9 2897 10 0 0 chr1 243531590 243531901 -38661763 - AluYa5 SINE Alu 0 311 1 332 332 7 5 chr1 243532406 243532529 -38661135 + MIR SINE MIR 49 171 -65 373 42 62 0 chr1 243532615 243532663 -38661001 + MADE1 DNA Mariner 1 51 -29 419 73 8 202 chr1 243534414 243534538 -38659126 - MSTC LTR MaLR -1 427 328 2073 122 111 3 chr1 243534578 243534778 -38658886 - MSTC LTR MaLR -47 381 204 1877 168 149 11 chr1 243534778 243535154 -38658510 + MSTA LTR MaLR 1 428 0 2073 122 111 3 chr1 243535154 243535296 -38658368 - MSTC LTR MaLR -224 204 2 301 246 120 112 chr1 243535392 243535831 -38657833 + L1ME LINE L1 2166 2566 -3649 5276 90 7 0 chr1 243535871 243536550 -38657114 - L1PB2 LINE L1 0 6151 5468 622 256 119 20 chr1 243536645 243537212 -38656452 + L1ME LINE L1 5059 5687 -552 1812 157 7 23 chr1 243537232 243537532 -38656132 - AluJo SINE Alu -17 295 1 765 179 37 25 chr1 243537741 243537903 -38655761 - MER106B DNA MER1_type 0 1059 896 22 0 0 0 chr1 243537975 243537997 -38655667 + AT_rich Low_complexity Low_complexity 1 22 0 614 149 0 0 chr1 243538010 243538097 -38655567 - AluJ/FLAM SINE Alu -223 89 3 327 328 81 10 chr1 243538390 243538592 -38655072 + MIR SINE MIR 39 253 -9 247 260 75 85 chr1 243538770 243538970 -38654694 - L2 LINE L2 -83 3189 2992 315 0 0 0 chr1 243539593 243539628 -38654036 + (T)n Simple_repeat Simple_repeat 1 35 0 236 100 25 0 chr1 243540349 243540389 -38653275 + (TA)n Simple_repeat Simple_repeat 1 41 0 264 293 122 73 chr1 243541238 243541443 -38652221 - L2 LINE L2 -1 3271 3057 2704 172 15 4 chr1 243541727 243542197 -38651467 + L1MD2 LINE L1 5417 5891 -468 1599 183 83 17 chr1 243542200 243542561 -38651103 + L1MD2 LINE L1 5953 6337 -22 769 150 0 16 chr1 243543347 243543474 -38650190 - AluSp/q SINE Alu 0 313 189 483 269 29 58 chr1 243544591 243544623 -38649041 - MIR SINE MIR -90 172 141 1979 105 11 0 chr1 243544623 243544890 -38648774 - AluSx SINE Alu -15 297 28 483 269 29 58 chr1 243544890 243545028 -38648636 - MIR SINE MIR -121 141 7 273 172 5 19 chr1 243545471 243545541 -38648123 - L1MEc LINE L1 -958 1618 1495 1927 134 3 7 chr1 243546495 243546778 -38646886 - AluSx SINE Alu -30 282 1 195 100 0 0 chr1 243548149 243548179 -38645485 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 392 275 71 28 chr1 243548247 243548434 -38645230 + MIR SINE MIR 30 212 -50 337 226 87 26 chr1 243549084 243549199 -38644465 - L1ME4a LINE L1 -44 6077 5956 25 0 0 0 chr1 243549295 243549320 -38644344 + AT_rich Low_complexity Low_complexity 1 25 0 235 292 15 0 chr1 243550855 243550920 -38642744 + (CA)n Simple_repeat Simple_repeat 2 67 0 813 200 27 0 chr1 243551303 243551453 -38642211 + MER5A DNA MER1_type 1 154 -35 1819 147 14 3 chr1 243551755 243552041 -38641623 - AluSx SINE Alu -10 302 14 674 254 54 15 chr1 243553317 243553522 -38640142 + MIR SINE MIR 7 219 -43 2046 137 0 0 chr1 243553561 243553846 -38639818 - AluSx SINE Alu -27 285 1 443 207 74 44 chr1 243554196 243554242 -38639422 - MIR SINE MIR -19 243 200 1737 174 11 17 chr1 243554242 243554529 -38639135 - AluJo SINE Alu -27 285 1 443 207 74 44 chr1 243554529 243554617 -38639047 - MIR SINE MIR -62 200 105 2307 77 0 13 chr1 243555421 243555719 -38637945 - AluY SINE Alu -17 294 1 2359 89 7 0 chr1 243555887 243556189 -38637475 - AluSx SINE Alu -8 304 1 1624 176 35 7 chr1 243556835 243557119 -38636545 + AluJb SINE Alu 1 292 -20 1964 188 17 8 chr1 243557261 243557613 -38636051 - MLT1A1 LTR MaLR 0 365 11 6238 205 78 82 chr1 243557623 243559364 -38634300 - MLT1A1-int LTR MaLR 0 1735 2 2250 170 6 6 chr1 243559366 243559731 -38633933 - MLT1A1 LTR MaLR 0 365 1 2024 143 0 3 chr1 243560099 243560392 -38633272 + AluSx SINE Alu 1 292 -20 313 195 23 46 chr1 243560406 243560493 -38633171 - L1ME4a LINE L1 -81 6040 5956 266 226 131 51 chr1 243560506 243560643 -38633021 - L1ME4a LINE L1 -303 5818 5671 2020 161 0 0 chr1 243561023 243561322 -38632342 - AluSx SINE Alu -13 299 1 437 262 223 20 chr1 243562182 243562384 -38631280 - MIR SINE MIR -1 261 19 881 204 19 5 chr1 243562384 243562590 -38631074 + L1M4 LINE L1 4369 4577 -1569 2176 112 7 7 chr1 243562590 243562894 -38630770 - AluSx SINE Alu -4 308 5 446 248 28 50 chr1 243564091 243564114 -38629550 + MIR SINE MIR 9 31 -231 2124 134 0 0 chr1 243564114 243564406 -38629258 + AluSx SINE Alu 1 292 -20 446 248 28 50 chr1 243564406 243564523 -38629141 + MIR SINE MIR 31 146 -116 332 294 75 20 chr1 243565242 243565388 -38628276 - MLT1L LTR MaLR 0 615 462 595 263 72 30 chr1 243565587 243565849 -38627815 - L1ME3A LINE L1 -245 5925 5653 268 200 0 0 chr1 243565858 243565908 -38627756 + MER112 DNA MER1_type 4 53 -207 1018 58 0 0 chr1 243565908 243566028 -38627636 + L1PA3 LINE L1 6033 6152 -3 230 214 0 71 chr1 243566113 243566197 -38627467 + MER112 DNA MER1_type 95 172 -88 278 289 105 18 chr1 243566308 243566422 -38627242 - L1ME3A LINE L1 -558 5608 5485 * 1737 118 7 0 chr1 243566417 243566687 -38626977 + L1 LINE L1 4558 4829 -1317 523 193 52 93 chr1 243566687 243566824 -38626840 - L1ME3A LINE L1 -716 5462 5321 2118 113 11 0 chr1 243566824 243567108 -38626556 - AluSx SINE Alu -25 287 1 523 193 52 93 chr1 243567108 243567434 -38626230 - L1ME3A LINE L1 -857 5321 5025 6451 140 51 14 chr1 243567501 243567996 -38625668 - L1MA5A LINE L1 -3 6294 5819 2277 115 3 0 chr1 243567996 243568300 -38625364 - AluSx SINE Alu -7 305 1 6451 140 51 14 chr1 243568300 243569798 -38623866 - L1MA5A LINE L1 -478 5819 4233 16731 155 22 5 chr1 243569800 243573502 -38620162 - L1PA13 LINE L1 -2 6161 2304 540 0 0 0 chr1 243573650 243573710 -38619954 + (TA)n Simple_repeat Simple_repeat 1 60 0 272 305 123 34 chr1 243573818 243574054 -38619610 - L1MC4 LINE L1 -375 7667 7326 1877 142 3 11 chr1 243574058 243574340 -38619324 + AluJo SINE Alu 1 280 -32 1308 247 64 126 chr1 243574582 243576149 -38617515 - L1MC4 LINE L1 -229 7813 6224 749 281 88 33 chr1 243576193 243576592 -38617072 - L1MEd LINE L1 -5189 930 510 467 277 79 55 chr1 243576606 243576935 -38616729 - L1MEd LINE L1 -5781 338 2 422 194 108 0 chr1 243577344 243577437 -38616227 - MER94 DNA DNA 0 134 32 360 186 0 0 chr1 243577444 243577503 -38616161 - MER2 DNA MER2_type -273 72 14 311 348 132 17 chr1 243577505 243577853 -38615811 - L2 LINE L2 -1038 2276 1889 5497 152 34 8 chr1 243580236 243581891 -38611773 - L1MA4 LINE L1 -11 6289 4591 1309 292 46 20 chr1 243582042 243582498 -38611166 - ERVL LTR ERVL -576 5188 4721 1775 301 118 11 chr1 243582560 243583533 -38610131 - ERVL LTR ERVL -1129 4635 3490 201 39 0 0 chr1 243583533 243583559 -38610105 + (TG)n Simple_repeat Simple_repeat 2 27 0 1775 301 118 11 chr1 243583559 243583684 -38609980 - ERVL LTR ERVL -2274 3490 3380 317 293 60 45 chr1 243583690 243583823 -38609841 - ERVL LTR ERVL -2612 3042 2908 256 171 0 0 chr1 243583998 243584039 -38609625 - ERVL LTR ERVL -3871 1783 1743 714 197 39 51 chr1 243584132 243584310 -38609354 - MIR SINE MIR 0 262 87 423 309 64 62 chr1 243584510 243584979 -38608685 - ERVL LTR ERVL -4321 1443 974 1086 313 81 12 chr1 243585561 243585967 -38607697 - LTR16A LTR ERVL -1 449 16 498 213 84 39 chr1 243586237 243586392 -38607272 - LTR67 LTR ERVL -2 555 394 234 239 0 0 chr1 243587133 243587204 -38606460 + (TA)n Simple_repeat Simple_repeat 1 71 0 17698 26 2 0 chr1 243587217 243590039 -38603625 - L1PA2 LINE L1 -4 6151 3323 800 176 0 16 chr1 243590051 243590176 -38603488 - FLAM_C SINE Alu -19 124 2 2305 116 0 0 chr1 243590199 243590501 -38603163 - AluSg SINE Alu -8 302 1 461 252 149 78 chr1 243590750 243591072 -38602592 - L1ME4a LINE L1 -255 5866 5522 1177 54 14 0 chr1 243591241 243591388 -38602276 - L1PA4 LINE L1 -1 6154 6006 764 332 93 16 chr1 243591867 243592385 -38601279 + L2 LINE L2 2748 3313 0 458 297 21 68 chr1 243592440 243592632 -38601032 + MIR SINE MIR 26 208 -54 2109 133 0 7 chr1 243593442 243593744 -38599920 - AluSx SINE Alu -11 301 2 271 322 0 0 chr1 243595276 243595366 -38598298 - L2 LINE L2 -1001 2313 2224 2003 115 7 0 chr1 243595376 243595655 -38598009 + AluSg SINE Alu 1 281 -29 22 56 0 0 chr1 243595834 243595870 -38597794 + AT_rich Low_complexity Low_complexity 1 36 0 414 121 0 0 chr1 243595870 243595928 -38597736 - AluS SINE Alu -22 290 233 2133 51 0 19 chr1 243596215 243596472 -38597192 + AluY SINE Alu 52 303 -8 1459 214 0 0 chr1 243596934 243597205 -38596459 - AluJo SINE Alu -4 308 38 802 179 109 16 chr1 243597767 243597951 -38595713 - L1MC5 LINE L1 -67 7894 7694 2832 91 11 0 chr1 243599218 243599569 -38594095 - THE1A LTR MaLR 0 355 1 2284 97 0 3 chr1 243599635 243599925 -38593739 + AluY SINE Alu 1 289 -22 642 194 36 7 chr1 243600928 243601067 -38592597 + MIR SINE MIR 29 171 -91 216 339 68 7 chr1 243603483 243603657 -38590007 + MIR SINE MIR 25 210 -52 307 339 25 25 chr1 243603674 243603792 -38589872 - L2 LINE L2 0 3272 3155 213 311 84 67 chr1 243604713 243604832 -38588832 - L2 LINE L2 0 3313 3193 724 296 51 63 chr1 243604961 243605131 -38588533 + L2 LINE L2 2983 3149 -164 1176 215 166 90 chr1 243605131 243605684 -38587980 - MLT1G1 LTR MaLR 0 595 1 724 296 51 63 chr1 243605684 243605848 -38587816 + L2 LINE L2 3149 3313 0 337 328 101 8 chr1 243605927 243606046 -38587618 + L2 LINE L2 3141 3270 -2 206 326 39 23 chr1 243606046 243606175 -38587489 - L2 LINE L2 -236 3036 2906 2092 116 0 16 chr1 243606662 243606965 -38586699 - AluSc SINE Alu -11 298 1 3397 180 51 20 chr1 243608514 243609218 -38584446 - L1MB8 LINE L1 0 6178 5453 1186 143 50 93 chr1 243609248 243609528 -38584136 - L1MA2 LINE L1 -2 6302 6035 337 314 121 0 chr1 243610430 243610570 -38583094 + MIR SINE MIR 100 256 -6 607 138 55 18 chr1 243610872 243610981 -38582683 - FLAM_A SINE Alu -10 132 20 339 243 40 0 chr1 243611279 243611452 -38582212 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 234 270 23 6 chr1 243611376 243611550 -38582114 + (CAATG)n Simple_repeat Simple_repeat 2 178 0 * 23 0 0 0 chr1 243612120 243612143 -38581521 + AT_rich Low_complexity Low_complexity 1 23 0 465 256 55 12 chr1 243614243 243614379 -38579285 + MIR SINE MIR 55 192 -70 387 245 38 38 chr1 243614805 243614911 -38578753 + MIR SINE MIR 106 211 -51 1700 167 0 30 chr1 243615040 243615199 -38578465 - AluJo SINE Alu -20 292 145 1240 83 60 0 chr1 243615199 243615367 -38578297 - L1PA8 LINE L1 -2 6170 5993 1700 167 0 30 chr1 243615367 243615506 -38578158 - AluJo SINE Alu -167 145 3 597 183 137 46 chr1 243616129 243616282 -38577382 + MIR SINE MIR 8 174 -88 293 313 0 21 chr1 243616330 243616426 -38577238 + L2 LINE L2 3188 3281 -32 423 121 69 26 chr1 243617081 243617197 -38576467 - Charlie1 DNA MER1_type -130 2631 2511 543 159 122 0 chr1 243617197 243617322 -38576342 - L1MA8 LINE L1 -131 6160 6017 1016 239 13 4 chr1 243617582 243617808 -38575856 - MIR SINE MIR -34 228 1 5504 140 53 7 chr1 243617980 243618842 -38574822 - MER4D LTR ERV1 -1 902 1 291 233 0 55 chr1 243619537 243619610 -38574054 + L2 LINE L2 3245 3313 0 948 173 0 0 chr1 243619662 243619818 -38573846 - AluJb SINE Alu -20 292 137 1750 160 0 48 chr1 243620186 243620524 -38573140 - AluJo SINE Alu 0 312 1 388 316 148 7 chr1 243622120 243622275 -38571389 + MER5A DNA MER1_type 13 189 0 324 297 79 0 chr1 243624632 243624733 -38568931 - L2 LINE L2 -10 3303 3195 243 227 206 21 chr1 243624869 243624966 -38568698 - MIR SINE MIR -62 146 32 485 285 76 6 chr1 243625239 243625397 -38568267 + MIR SINE MIR 21 189 -73 1000 70 78 0 chr1 243625681 243625810 -38567854 + MER85 DNA T2_type 1 139 0 834 208 16 67 chr1 243626270 243626525 -38567139 - L2 LINE L2 0 3313 3072 2791 217 21 34 chr1 243626548 243627162 -38566502 + MER82 DNA MER2_type 48 653 0 697 252 142 14 chr1 243627167 243627466 -38566198 - L2 LINE L2 -253 3060 2724 1578 245 86 42 chr1 243629575 243630241 -38563423 - L1MC4 LINE L1 -422 7620 6926 1975 152 44 39 chr1 243630888 243631250 -38562414 - THE1B LTR MaLR 0 364 1 249 286 60 24 chr1 243631313 243631397 -38562267 + MIR3 SINE MIR 115 201 -7 325 140 0 0 chr1 243732443 243732500 -38461164 + Alu SINE Alu 246 302 0 850 108 31 8 chr1 243732560 243732736 -38460928 + AluSg/x SINE Alu 152 330 0 1430 120 80 93 chr1 243732900 243733250 -38460414 - MER4A LTR ERV1 0 664 261 665 91 10 20 chr1 243733250 243733349 -38460315 - MER4A LTR ERV1 -566 98 1 2493 70 0 6 chr1 243733427 243733740 -38459924 - AluY SINE Alu 0 311 1 228 308 143 0 chr1 243733769 243733860 -38459804 - L2 LINE L2 0 3272 3169 656 315 123 41 chr1 243733903 243734414 -38459250 + L3 LINE CR1 717 1269 -308 1261 285 72 25 chr1 243734416 243734889 -38458775 + MLT1J LTR MaLR 1 495 -16 2433 75 0 0 chr1 243734942 243735234 -38458430 + AluSg SINE Alu 1 292 -18 2101 108 3 22 chr1 243735265 243735581 -38458083 + AluSx SINE Alu 1 310 -2 185 263 63 120 chr1 243735582 243735757 -38457907 + L3 LINE CR1 1408 1572 -5 46 0 0 0 chr1 243735783 243735829 -38457835 + AT_rich Low_complexity Low_complexity 1 46 0 478 94 0 0 chr1 243735980 243736044 -38457620 + AluJ/FLAM SINE Alu 12 75 -237 1724 156 85 100 chr1 243736045 243736506 -38457158 - LTR8 LTR ERV1 -47 644 191 1562 129 0 0 chr1 243736645 243736862 -38456802 - AluSx SINE Alu -95 217 1 2234 108 0 0 chr1 243737134 243737431 -38456233 - AluSc SINE Alu -12 297 1 1655 181 0 4 chr1 243737737 243738003 -38455661 - AluJo SINE Alu -32 280 16 432 0 0 0 chr1 243738778 243738826 -38454838 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1979 135 0 3 chr1 243738828 243739110 -38454554 - AluSx SINE Alu -31 281 1 318 130 0 0 chr1 243739397 243739443 -38454221 - 5S rRNA rRNA -75 46 1 670 258 99 28 chr1 243739460 243739752 -38453912 + MLT2B1 LTR ERVL 193 486 -34 414 0 0 0 chr1 243739768 243739814 -38453850 + (TA)n Simple_repeat Simple_repeat 1 46 0 318 140 18 0 chr1 243739817 243739874 -38453790 + MLT2B1 LTR ERVL 462 519 -1 2413 84 3 3 chr1 243740128 243740439 -38453225 + AluSp SINE Alu 1 311 -2 2039 110 22 0 chr1 243740754 243741046 -38452618 + AluSc SINE Alu 1 298 0 1111 124 0 32 chr1 243741046 243741231 -38452433 + AluSg/x SINE Alu 134 312 0 227 182 23 0 chr1 243741586 243741630 -38452034 + MER5C DNA MER1_type 31 75 -249 299 185 0 174 chr1 243741764 243741856 -38451808 - MER5C DNA MER1_type -248 76 1 441 261 139 12 chr1 243742014 243742179 -38451485 - MER112 DNA MER1_type 0 260 75 539 267 100 53 chr1 243742215 243742496 -38451168 + MLT1H LTR MaLR 81 374 -175 2532 54 10 10 chr1 243742696 243743009 -38450655 + L1PA6 LINE L1 5841 6153 -1 2111 111 3 3 chr1 243743033 243743330 -38450334 + AluSq SINE Alu 1 297 -16 469 179 0 0 chr1 243743409 243743476 -38450188 + AluS SINE Alu 2 68 -242 2006 137 3 3 chr1 243743576 243743861 -38449803 - AluSx SINE Alu -27 285 1 744 233 83 24 chr1 243743861 243744087 -38449577 + L1MC4 LINE L1 7563 7713 -95 274 211 0 0 chr1 243744088 243744145 -38449519 + L1MC4 LINE L1 7986 8042 0 1558 187 0 35 chr1 243744232 243744351 -38449313 + AluJo SINE Alu 3 125 -187 2348 103 0 0 chr1 243744351 243744653 -38449011 - AluSg SINE Alu -8 302 1 1558 187 0 35 chr1 243744653 243744853 -38448811 + AluJo SINE Alu 125 312 0 225 196 0 0 chr1 243744913 243744964 -38448700 + (TG)n Simple_repeat Simple_repeat 1 51 0 1291 130 93 8 chr1 243744974 243745184 -38448480 + L1MA7 LINE L1 5999 6234 -57 261 0 0 0 chr1 243745184 243745213 -38448451 + (TA)n Simple_repeat Simple_repeat 1 29 0 1291 130 93 8 chr1 243745213 243745249 -38448415 + L1MA7 LINE L1 6234 6266 -25 837 218 53 24 chr1 243745490 243745696 -38447968 + MIR SINE MIR 51 262 0 1807 153 20 7 chr1 243745723 243746018 -38447646 - AluJb SINE Alu -3 309 11 1447 201 167 37 chr1 243747055 243747462 -38446202 - MER110 LTR ERV1 0 491 32 * 2882 124 21 42 chr1 243747454 243747929 -38445735 + LTR32 LTR ERVL 7 471 0 1852 163 3 3 chr1 243748133 243748428 -38445236 - AluJb SINE Alu -17 295 1 1770 122 68 18 chr1 243749020 243749298 -38444366 - AluSx SINE Alu -20 292 1 485 316 123 5 chr1 243749793 243750005 -38443659 - MIR SINE MIR 0 262 26 387 219 263 0 chr1 243750015 243750129 -38443535 + MIR SINE MIR 2 145 -117 326 103 385 0 chr1 243750134 243750212 -38443452 + L1M LINE L1 5308 5415 -2627 258 170 0 0 chr1 243750326 243750373 -38443291 + MIR SINE MIR 169 215 -47 2294 84 0 0 chr1 243750375 243750688 -38442976 + AluSg SINE Alu 1 310 0 476 278 35 0 chr1 243750806 243750967 -38442697 + MIR SINE MIR 67 232 -30 2415 150 0 0 chr1 243751898 243752245 -38441419 + MER7A DNA MER2_type 1 345 -1 1525 135 91 8 chr1 243752838 243753157 -38440507 - MER4A LTR ERV1 0 664 261 636 122 10 10 chr1 243753157 243753255 -38440409 - MER4A LTR ERV1 -566 98 1 510 367 46 0 chr1 243753404 243753663 -38440001 + L2 LINE L2 2625 2895 -419 543 217 96 0 chr1 243754255 243754365 -38439299 + MER63 DNA MER1_type 1 747 -89 2466 192 27 18 chr1 243754365 243754889 -38438775 - LTR27 LTR ERV1 0 501 2 668 181 154 92 chr1 243754898 243755158 -38438506 + MER63 DNA MER1_type 786 1061 0 447 293 152 0 chr1 243755444 243755608 -38438056 + MER5A DNA MER1_type 1 189 0 496 225 17 50 chr1 243755661 243755781 -38437883 + MER3 DNA MER1_type 9 124 -85 1281 278 50 0 chr1 243755781 243756144 -38437520 + L1MEc LINE L1 403 783 -5613 23 33 0 0 chr1 243756145 243756175 -38437489 + AT_rich Low_complexity Low_complexity 1 30 0 2996 241 93 25 chr1 243756639 243756717 -38436947 + L1MEc LINE L1 779 850 -5546 180 0 0 0 chr1 243756717 243756737 -38436927 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2996 241 93 25 chr1 243756737 243757738 -38435926 + L1MEc LINE L1 850 1931 -4465 685 228 0 38 chr1 243757740 243757924 -38435740 + L1MEc LINE L1 3633 3809 -2406 214 361 136 0 chr1 243757962 243758117 -38435547 + L2 LINE L2 2598 2773 -541 218 247 14 41 chr1 243758295 243758368 -38435296 - MIR SINE MIR -2 260 190 * 359 259 80 9 chr1 243758365 243758477 -38435187 + MIR SINE MIR 128 247 -15 2289 100 7 0 chr1 243758561 243758860 -38434804 - AluSp SINE Alu -12 301 1 2185 114 26 7 chr1 243758872 243759178 -38434486 - AluSx SINE Alu 0 312 1 466 254 57 25 chr1 243759188 243759310 -38434354 - MIR SINE MIR -123 139 14 2812 120 16 32 chr1 243759339 243759704 -38433960 + MSTA LTR MaLR 1 359 -69 2445 88 0 0 chr1 243759704 243760011 -38433653 - AluY SINE Alu -4 307 1 2812 120 16 32 chr1 243760011 243760077 -38433587 + MSTA LTR MaLR 359 425 -3 10132 165 23 6 chr1 243760080 243761702 -38431962 + MSTA-int LTR MaLR 1 1651 0 2624 134 78 0 chr1 243761702 243762097 -38431567 + MSTA LTR MaLR 1 426 -2 1332 176 46 77 chr1 243763240 243763654 -38430010 - LTR37A LTR ERV1 -4 422 22 6580 112 41 9 chr1 243763674 243764817 -38428847 - L1MA3 LINE L1 -10 6295 5110 1604 105 30 14 chr1 243764814 243765143 -38428521 - L1P LINE L1 -743 5403 5090 * 4710 160 11 19 chr1 243765131 243766006 -38427658 + L1P LINE L1 4211 5078 -1068 2237 180 39 21 chr1 243765998 243766514 -38427150 - L1 LINE L1 -2565 3581 3057 * 12093 224 35 50 chr1 243766519 243769418 -38424246 + L1PA12 LINE L1 4 2944 -4640 2248 120 7 0 chr1 243769418 243769726 -38423938 + AluSq SINE Alu 1 310 -3 12093 224 35 50 chr1 243769726 243769933 -38423731 + L1PA12 LINE L1 2944 3152 -4432 2042 125 3 71 chr1 243769933 243770269 -38423395 + AluSq SINE Alu 1 313 0 12093 224 35 50 chr1 243770269 243772314 -38421350 + L1PA12 LINE L1 3152 5041 -2543 2019 158 0 0 chr1 243772314 243772606 -38421058 - AluSx SINE Alu -16 296 5 12093 224 35 50 chr1 243772606 243773660 -38420004 + L1PA12 LINE L1 5041 6109 -1475 1457 262 57 48 chr1 243774055 243774438 -38419226 + L1MEc LINE L1 1021 1414 -4982 1914 238 103 34 chr1 243774438 243774640 -38419024 + MLT1E LTR MaLR 1 188 -405 462 18 0 0 chr1 243774640 243774695 -38418969 + (TG)n Simple_repeat Simple_repeat 2 56 0 1914 238 103 34 chr1 243774695 243775047 -38418617 + MLT1E LTR MaLR 188 593 0 1457 262 57 48 chr1 243775047 243775349 -38418315 + L1MEc LINE L1 1414 1712 -4684 193 256 64 0 chr1 243776356 243776434 -38417230 - MIR SINE MIR -58 150 84 481 172 162 0 chr1 243776464 243776563 -38417101 + L2 LINE L2 3191 3305 -8 356 280 49 108 chr1 243776587 243776672 -38416992 + L1MEc LINE L1 1703 1791 -4605 1774 164 3 10 chr1 243776672 243776964 -38416700 - AluJb SINE Alu -22 290 1 356 280 49 108 chr1 243776964 243777164 -38416500 + L1MEc LINE L1 1791 1971 -4425 269 222 0 0 chr1 243777182 243777265 -38416399 + L1MEc LINE L1 2156 2238 -3977 2335 103 0 3 chr1 243777299 243777601 -38416063 - AluSx SINE Alu -11 301 1 21 0 0 0 chr1 243778000 243778021 -38415643 + AT_rich Low_complexity Low_complexity 1 21 0 333 282 39 29 chr1 243778022 243778125 -38415539 - L2 LINE L2 -35 3237 3134 220 177 13 13 chr1 243778935 243778996 -38414668 + (TA)n Simple_repeat Simple_repeat 1 64 -15 2129 115 7 0 chr1 243778996 243779283 -38414381 - AluSx SINE Alu -23 289 1 220 177 13 13 chr1 243779283 243779300 -38414364 + (TA)n Simple_repeat Simple_repeat 63 79 0 344 209 209 85 chr1 243779353 243779554 -38414110 + MLT1H LTR MaLR 82 307 -242 2265 110 3 3 chr1 243779670 243779970 -38413694 - AluSx SINE Alu -12 300 1 24 32 0 0 chr1 243779977 243780008 -38413656 + AT_rich Low_complexity Low_complexity 1 31 0 317 214 0 12 chr1 243780293 243780377 -38413287 + (TA)n Simple_repeat Simple_repeat 2 84 0 236 271 0 71 chr1 243780407 243780457 -38413207 - L2 LINE L2 -221 3051 3006 2548 142 10 20 chr1 243780457 243780727 -38412937 + MLT1B LTR MaLR 1 267 -123 2296 114 3 0 chr1 243780727 243781035 -38412629 + AluSp SINE Alu 1 309 -4 2548 142 10 20 chr1 243781035 243781158 -38412506 + MLT1B LTR MaLR 267 390 0 236 271 0 71 chr1 243781158 243781177 -38412487 - L2 LINE L2 -266 3006 2987 349 267 23 0 chr1 243781188 243781274 -38412390 + L1MC/D LINE L1 5508 5595 -2213 2727 218 92 4 chr1 243781586 243782131 -38411533 - MLT1E LTR MaLR 0 593 1 2127 142 0 0 chr1 243782156 243782465 -38411199 + AluSx SINE Alu 1 309 -3 2246 119 6 0 chr1 243782472 243782783 -38410881 + AluSq SINE Alu 1 313 0 2382 74 7 7 chr1 243784794 243785092 -38408572 - AluSg SINE Alu -12 298 1 291 356 74 15 chr1 243785597 243785732 -38407932 + MER5B DNA MER1_type 1 143 -35 21735 91 12 12 chr1 243788187 243791659 -38402005 - HERV9 LTR ERV1 -4477 3922 358 5760 148 19 19 chr1 243791659 243792628 -38401036 + LTR5 LTR ERVK 1 969 0 21735 91 12 12 chr1 243792628 243792987 -38400677 - HERV9 LTR ERV1 -8041 358 1 5968 73 0 0 chr1 243792987 243793675 -38399989 - LTR12 LTR ERV1 0 688 1 1326 258 28 35 chr1 243793675 243793837 -38399827 - L2 LINE L2 -688 2626 2464 2295 98 0 0 chr1 243793837 243794133 -38399531 + AluY SINE Alu 1 296 -15 1326 258 28 35 chr1 243794133 243794369 -38399295 - L2 LINE L2 -850 2464 2231 682 169 120 14 chr1 243794385 243794446 -38399218 - MER45A DNA AcHobo -1424 157 104 1963 148 0 3 chr1 243794446 243794730 -38398934 + AluJb SINE Alu 1 283 -29 682 169 120 14 chr1 243794730 243794810 -38398854 - MER45A DNA AcHobo -1477 104 1 913 247 146 3 chr1 243794810 243795097 -38398567 - L2 LINE L2 -1076 2238 1911 27 0 0 0 chr1 243795112 243795139 -38398525 + AT_rich Low_complexity Low_complexity 1 27 0 333 47 0 0 chr1 243795463 243795506 -38398158 + (TA)n Simple_repeat Simple_repeat 2 44 0 584 97 0 0 chr1 243795506 243795578 -38398086 - AluSg/x SINE Alu -24 286 215 279 0 0 0 chr1 243795605 243795636 -38398028 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 423 0 0 0 chr1 243795635 243795682 -38397982 + (GA)n Simple_repeat Simple_repeat 2 48 0 2100 105 0 7 chr1 243795683 243795960 -38397704 - AluSg SINE Alu -35 275 1 417 327 249 5 chr1 243796888 243797141 -38396523 + L2 LINE L2 2804 2994 -319 1874 142 3 34 chr1 243797141 243797436 -38396228 + AluJo SINE Alu 5 290 -22 417 327 249 5 chr1 243797436 243797592 -38396072 + L2 LINE L2 2994 3313 0 2639 53 0 0 chr1 243798152 243798455 -38395209 + AluY SINE Alu 1 303 -8 268 274 8 8 chr1 243798935 243799052 -38394612 + CT-rich Low_complexity Low_complexity 1 117 0 1568 189 0 11 chr1 243799207 243799492 -38394172 + AluJo SINE Alu 1 282 -30 2659 59 226 133 chr1 243799610 243800150 -38393514 - LTR12 LTR ERV1 -124 590 1 4516 102 8 14 chr1 243800151 243800795 -38392869 - HERV9 LTR ERV1 -3 8396 7757 1191 148 106 19 chr1 243800790 243801046 -38392618 - Harlequin LTR ERV1 -5176 1720 1443 * 2035 115 3 26 chr1 243801027 243801367 -38392297 - Harlequin LTR ERV1 -7577 1049 718 5533 104 4 1 chr1 243801394 243802155 -38391509 - Harlequin LTR ERV1 -3455 4944 4182 32 57 0 0 chr1 243802346 243802399 -38391265 + AT_rich Low_complexity Low_complexity 1 53 0 619 231 149 30 chr1 243802407 243802702 -38390962 - HAL1 LINE L1 -2 2505 2176 644 280 0 0 chr1 243803163 243803331 -38390333 - HAL1 LINE L1 -732 1775 1608 537 221 126 52 chr1 243803351 243803717 -38389947 - HAL1 LINE L1 -1234 1273 881 239 355 45 0 chr1 243803726 243803836 -38389828 - HAL1 LINE L1 -2387 120 6 258 268 62 10 chr1 243804524 243804621 -38389043 + L2 LINE L2 3199 3300 -13 210 37 0 0 chr1 243805059 243805086 -38388578 + (CA)n Simple_repeat Simple_repeat 2 28 0 2075 114 3 36 chr1 243806784 243807090 -38386574 - AluSx SINE Alu -16 296 1 281 288 0 0 chr1 243808675 243808741 -38384923 + L3 LINE CR1 1511 1576 -1 510 352 31 46 chr1 243809280 243809668 -38383996 + L2 LINE L2 2686 3068 -204 237 319 14 14 chr1 243809880 243809952 -38383712 + L2 LINE L2 3201 3272 0 191 233 81 105 chr1 243810439 243810525 -38383139 + L2 LINE L2 3184 3267 -5 545 283 130 23 chr1 243811910 243812087 -38381577 + MER91A DNA MER1_type 1 196 0 382 316 110 45 chr1 243812303 243812639 -38381025 - L2 LINE L2 -20 3252 2895 329 228 123 0 chr1 243812700 243812790 -38380874 - MER5A DNA MER1_type -82 107 4 261 265 72 0 chr1 243812817 243812900 -38380764 + L2 LINE L2 3158 3246 -26 1964 117 7 0 chr1 243812942 243813216 -38380448 + AluSx SINE Alu 1 276 -36 681 197 39 8 chr1 243813434 243813561 -38380103 + FLAM_C SINE Alu 3 133 0 7951 128 44 56 chr1 243814130 243814232 -38379432 - L1 LINE L1 -3552 4013 3911 2469 62 0 3 chr1 243814232 243814524 -38379140 - AluY SINE Alu -20 291 1 7951 128 44 56 chr1 243814524 243814691 -38378973 - L1 LINE L1 -3654 3911 3743 2261 112 0 3 chr1 243814691 243814986 -38378678 - AluSg SINE Alu -16 294 1 7951 128 44 56 chr1 243814986 243816318 -38377346 - L1 LINE L1 -3822 3743 2452 1895 157 13 22 chr1 243816318 243816631 -38377033 - AluJo SINE Alu -2 310 1 7951 128 44 56 chr1 243816631 243816891 -38376773 - L1 LINE L1 -5113 2452 2190 819 169 14 0 chr1 243816991 243817139 -38376525 - L1 LINE L1 -853 5293 5144 581 234 45 51 chr1 243817140 243817202 -38376462 - L1MC4a LINE L1 -168 5953 5892 2310 87 0 3 chr1 243817202 243817500 -38376164 - AluY SINE Alu -14 297 1 581 234 45 51 chr1 243817500 243817761 -38375903 - L1MC4a LINE L1 -229 5892 5634 1051 141 42 5 chr1 243817790 243817982 -38375682 - L1MA3 LINE L1 0 6305 6107 2007 158 0 0 chr1 243818022 243818320 -38375344 - AluSx SINE Alu -14 298 1 11110 155 18 15 chr1 243818423 243821164 -38372500 - L1MA3 LINE L1 -265 6040 3293 35337 88 5 47 chr1 243821269 243823188 -38370476 - L1P LINE L1 -1108 5038 3039 1371 85 0 0 chr1 243823188 243823364 -38370300 - AluY SINE Alu -2 309 134 35337 88 5 47 chr1 243823364 243826524 -38367140 - L1P LINE L1 -3107 3039 7 369 260 49 16 chr1 243827012 243827135 -38366529 + L2 LINE L2 2835 2961 -311 1718 231 8 23 chr1 243827140 243827534 -38366130 - MLT2C1 LTR ERVL 0 397 10 1153 205 38 4 chr1 243827538 243827777 -38365887 - ERVL-C1 LTR ERVL -7 5757 5511 23 0 0 0 chr1 243827819 243827842 -38365822 + AT_rich Low_complexity Low_complexity 1 23 0 279 290 0 0 chr1 243827948 243828010 -38365654 + L2 LINE L2 3230 3291 -22 180 0 0 0 chr1 243828016 243828036 -38365628 + (T)n Simple_repeat Simple_repeat 1 20 0 4153 178 64 9 chr1 243828159 243829839 -38363825 - L1MCa LINE L1 -2890 3536 1657 2179 123 0 0 chr1 243829839 243830140 -38363524 - AluSx SINE Alu -11 301 1 4153 178 64 9 chr1 243830140 243830275 -38363389 - L1MCa LINE L1 -4769 1657 1531 3426 136 149 27 chr1 243830275 243830938 -38362726 + Tigger2 DNA MER2_type 1 744 -1974 1452 118 61 8 chr1 243831004 243831249 -38362415 + Tigger2 DNA MER2_type 2461 2718 0 410 202 9 9 chr1 243831249 243831284 -38362380 - L1MCa LINE L1 -4894 1532 1498 2197 114 7 7 chr1 243831284 243831592 -38362072 - AluSx SINE Alu -4 308 1 410 202 9 9 chr1 243831592 243831665 -38361999 - L1MCa LINE L1 -4927 1499 1424 267 54 0 0 chr1 243831666 243831703 -38361961 + (TG)n Simple_repeat Simple_repeat 2 38 0 2215 105 0 3 chr1 243831703 243831999 -38361665 - AluSx SINE Alu -17 295 1 706 248 51 62 chr1 243831999 243832104 -38361560 - L1MEd LINE L1 -4785 1525 1420 2255 121 0 3 chr1 243832104 243832417 -38361247 - AluSx SINE Alu 0 312 1 706 248 51 62 chr1 243832417 243832718 -38360946 - L1MEd LINE L1 -4890 1420 1081 1652 177 21 0 chr1 243832756 243833039 -38360625 - AluJo SINE Alu -23 289 1 2112 96 7 4 chr1 243833308 243833611 -38360053 - AluSc SINE Alu 0 304 1 227 329 39 39 chr1 243833914 243834069 -38359595 - L1MEd LINE L1 -5886 233 79 2531 67 0 0 chr1 243834085 243834384 -38359280 - AluY SINE Alu -12 299 1 2220 102 7 3 chr1 243834538 243834832 -38358832 - AluSq SINE Alu -18 295 1 1639 120 110 41 chr1 243835006 243835298 -38358366 - AluSx SINE Alu 0 312 1 324 48 0 0 chr1 243835398 243835440 -38358224 + MADE1 DNA Mariner 1 42 -38 1276 123 0 11 chr1 243835576 243835763 -38357901 + AluSg/x SINE Alu 115 299 -13 1523 178 0 62 chr1 243835800 243836092 -38357572 - AluJo SINE Alu -34 278 5 29 47 0 0 chr1 243836201 243836244 -38357420 + AT_rich Low_complexity Low_complexity 1 43 0 2080 132 3 0 chr1 243836636 243836925 -38356739 - AluSx SINE Alu -20 292 3 2376 91 0 0 chr1 243837404 243837700 -38355964 + AluSx SINE Alu 1 296 -16 2161 116 3 0 chr1 243837956 243838257 -38355407 + AluSg SINE Alu 1 302 -8 344 309 53 67 chr1 243838354 243838639 -38355025 - L2 LINE L2 -1892 1422 1142 2226 108 9 19 chr1 243839093 243839409 -38354255 + AluSp SINE Alu 1 313 0 229 288 55 0 chr1 243839585 243839658 -38354006 + MER7C DNA MER2_type 2 78 -524 400 138 0 100 chr1 243839662 243839742 -38353922 - AluJ/FRAM SINE Alu -16 296 225 1501 126 111 0 chr1 243840061 243840354 -38353310 - Tigger4(Zombi) DNA MER2_type 0 2731 1 185 260 80 0 chr1 243840457 243840507 -38353157 - MIR SINE MIR -73 135 82 329 306 108 22 chr1 243841007 243841324 -38352340 + LTR16B LTR ERVL 14 333 -131 422 276 16 16 chr1 243841549 243841672 -38351992 + MIR SINE MIR 19 141 -67 710 171 0 36 chr1 243842061 243842154 -38351510 + L1MEc LINE L1 21 109 -6317 2285 108 0 0 chr1 243842154 243842450 -38351214 - AluSg SINE Alu -13 297 2 710 171 0 36 chr1 243842450 243842496 -38351168 + L1MEc LINE L1 109 155 -6271 1063 248 112 31 chr1 243842858 243843385 -38350279 - L1ME LINE L1 -4832 2023 1478 1926 135 50 0 chr1 243843401 243843482 -38350182 - MER1B DNA MER1_type -2394 318 242 2223 114 10 0 chr1 243843482 243843781 -38349883 - AluSx SINE Alu -10 302 1 1926 135 50 0 chr1 243843781 243844002 -38349662 - MER1B DNA MER1_type -2470 242 1 624 299 33 0 chr1 243844004 243844215 -38349449 - L1ME LINE L1 -5382 1477 1260 539 215 0 41 chr1 243844488 243844609 -38349055 - L1ME LINE L1 -5909 1038 923 471 224 73 35 chr1 243844648 243844907 -38348757 - L1MDa LINE L1 -4614 1926 1658 978 199 60 15 chr1 243844917 243845118 -38348546 - MER46A DNA MER2_type -26 210 1 386 267 37 44 chr1 243845121 243845256 -38348408 - L1M2c LINE L1 -4625 1758 1253 * 991 282 42 21 chr1 243845249 243845344 -38348320 + L1MEc LINE L1 2075 2167 -4440 2212 128 0 3 chr1 243845344 243845649 -38348015 + AluSq SINE Alu 1 304 -9 991 282 42 21 chr1 243845649 243845979 -38347685 + L1MEc LINE L1 2167 2509 -4098 735 149 0 149 chr1 243845981 243846142 -38347522 + FLAM_C SINE Alu 2 138 -5 393 221 117 17 chr1 243846145 243846411 -38347253 + L1MEc LINE L1 3317 3612 -2814 287 167 0 0 chr1 243846427 243846481 -38347183 - AluSp/q SINE Alu 0 303 250 2040 201 194 36 chr1 243846581 243846652 -38347012 - Zaphod DNA AcHobo -3377 654 596 2399 58 3 3 chr1 243846652 243846945 -38346719 + AluY SINE Alu 1 293 -18 2040 201 194 36 chr1 243846945 243847431 -38346233 - Zaphod DNA AcHobo -3435 596 9 2420 91 0 3 chr1 243848182 243848491 -38345173 + AluSq SINE Alu 1 308 -5 418 191 36 0 chr1 243848997 243849081 -38344583 - L1ME2 LINE L1 0 6164 6078 280 136 0 0 chr1 243849103 243849147 -38344517 + U5 snRNA snRNA 1 44 -72 233 121 0 0 chr1 243849162 243849195 -38344469 - L1ME1 LINE L1 -110 6056 6024 1982 112 14 3 chr1 243849206 243849493 -38344171 + AluSq SINE Alu 1 290 -23 33 0 0 0 chr1 243849703 243849736 -38343928 + GC_rich Low_complexity Low_complexity 1 33 0 11856 140 37 37 chr1 243850133 243851373 -38342291 - L1 LINE L1 -3075 4490 3252 1823 161 3 7 chr1 243851373 243851685 -38341979 + AluSx SINE Alu 1 311 0 11856 140 37 37 chr1 243851685 243852097 -38341567 - L1 LINE L1 -4313 3252 2842 1842 135 4 8 chr1 243852097 243852363 -38341301 - AluSx SINE Alu -25 287 23 11856 140 37 37 chr1 243852363 243852870 -38340794 - L1 LINE L1 -4723 2842 2337 1985 151 14 0 chr1 243852870 243853161 -38340503 - AluSx SINE Alu -17 295 1 11856 140 37 37 chr1 243853161 243853365 -38340299 - L1 LINE L1 -5228 2337 2135 2054 129 0 3 chr1 243853365 243853667 -38339997 - AluSg SINE Alu -9 301 1 11856 140 37 37 chr1 243853667 243854192 -38339472 - L1 LINE L1 -5430 2135 1596 2636 135 48 14 chr1 243854336 243854750 -38338914 + MSTA LTR MaLR 1 428 0 2368 97 3 0 chr1 243855242 243855552 -38338112 - AluSx SINE Alu -1 311 1 2480 47 0 10 chr1 243855683 243855980 -38337684 - AluY SINE Alu -10 301 8 311 260 10 39 chr1 243856862 243856966 -38336698 - MIR SINE MIR -32 230 130 282 276 13 0 chr1 243858265 243858341 -38335323 - MIR SINE MIR -21 241 165 483 301 31 41 chr1 243858348 243858544 -38335120 - LTR67 LTR ERVL -317 240 47 700 297 49 15 chr1 243858655 243858921 -38334743 - L2 LINE L2 -1344 1970 1696 316 384 101 9 chr1 243859108 243859454 -38334210 - L2 LINE L2 -1964 1350 973 1832 200 126 80 chr1 243859541 243859706 -38333958 + MLT1E LTR MaLR 1 157 -436 1924 135 83 0 chr1 243859706 243859994 -38333670 + AluSx SINE Alu 1 312 0 1832 200 126 80 chr1 243859994 243860393 -38333271 + MLT1E LTR MaLR 157 591 -2 645 222 74 37 chr1 243861282 243861419 -38332245 - L1MEd LINE L1 -5894 225 76 315 0 0 0 chr1 243861419 243861454 -38332210 + (CA)n Simple_repeat Simple_repeat 2 36 0 645 222 74 37 chr1 243861454 243861532 -38332132 - L1MEd LINE L1 -6043 76 2 2220 121 3 6 chr1 243861552 243861866 -38331798 - AluSq SINE Alu 0 313 1 1596 143 7 58 chr1 243861896 243862190 -38331474 - AluJo SINE Alu -15 297 19 1433 171 37 30 chr1 243862210 243862509 -38331155 - AluJo SINE Alu -11 301 1 326 301 60 32 chr1 243862553 243862769 -38330895 - L1M4c LINE L1 -3905 2945 2724 3220 134 6 30 chr1 243862784 243863312 -38330352 + L1PA15-16 LINE L1 2268 2782 -4067 4209 223 20 27 chr1 243863441 243864529 -38329135 + L1 LINE L1 3556 4636 -2213 1408 108 0 0 chr1 243864530 243864715 -38328949 - AluSx SINE Alu -127 185 1 2242 113 3 0 chr1 243864810 243865120 -38328544 - AluSq SINE Alu -2 311 1 371 337 63 24 chr1 243865131 243865386 -38328278 + L2 LINE L2 1821 2085 -1229 * 470 273 118 0 chr1 243865374 243865535 -38328129 + L2 LINE L2 2193 2372 -942 303 367 45 49 chr1 243865578 243865792 -38327872 - L2 LINE L2 -2771 543 329 1722 159 20 23 chr1 243865792 243866093 -38327571 + AluJo SINE Alu 1 300 -12 303 367 45 49 chr1 243866093 243866164 -38327500 - L2 LINE L2 -2985 329 259 199 365 67 10 chr1 243866221 243866325 -38327339 + L2 LINE L2 3158 3267 -5 302 258 76 106 chr1 243868470 243868668 -38324996 - L1M4c LINE L1 -5894 955 764 21 0 0 0 chr1 243870420 243870441 -38323223 + AT_rich Low_complexity Low_complexity 1 21 0 316 303 10 10 chr1 243871247 243871346 -38322318 - MIR SINE MIR -108 154 56 255 153 31 174 chr1 243871508 243871606 -38322058 - MIR3 SINE MIR -16 192 109 184 239 88 171 chr1 243871912 243872117 -38321547 - MIR SINE MIR -16 246 59 267 269 211 0 chr1 243872164 243872268 -38321396 - L2 LINE L2 -1 3312 3187 439 289 83 22 chr1 243873616 243873796 -38319868 - L3 LINE CR1 -1 1576 1386 205 337 51 0 chr1 243873882 243873980 -38319684 - L3 LINE CR1 -216 1361 1259 294 296 53 58 chr1 243874017 243874223 -38319441 - L1ME3A LINE L1 -1 6169 5965 201 171 0 0 chr1 243874414 243874449 -38319215 + T-rich Low_complexity Low_complexity 1 35 0 1001 231 146 16 chr1 243874555 243874863 -38318801 - L1ME3A LINE L1 -355 5815 5468 180 0 0 0 chr1 243875105 243875125 -38318539 + (T)n Simple_repeat Simple_repeat 1 20 0 1847 115 0 88 chr1 243875844 243876025 -38317639 - AluJb SINE Alu -11 301 160 2427 61 10 3 chr1 243876025 243876320 -38317344 - AluY SINE Alu -14 297 1 1847 115 0 88 chr1 243876320 243876468 -38317196 - AluJb SINE Alu -152 160 1 517 314 54 27 chr1 243877208 243877466 -38316198 + LTR33 LTR ERVL 2 266 -255 701 161 26 39 chr1 243877507 243877562 -38316102 + LTR33 LTR ERVL 365 419 -102 616 199 85 95 chr1 243877562 243877773 -38315891 - MER63A DNA MER1_type -1 209 1 701 161 26 39 chr1 243877773 243877872 -38315792 + LTR33 LTR ERVL 419 517 -4 1664 106 122 0 chr1 243877921 243878175 -38315489 - AluY SINE Alu -14 297 13 203 261 15 0 chr1 243878901 243878966 -38314698 + (TCTG)n Simple_repeat Simple_repeat 3 68 0 201 181 48 12 chr1 243878977 243879060 -38314604 + (TCTCTG)n Simple_repeat Simple_repeat 3 88 0 204 222 95 32 chr1 243879444 243879507 -38314157 + L2 LINE L2 3242 3308 -5 8489 113 3 3 chr1 243879585 243880404 -38313260 - L1PA8A LINE L1 -1 6130 5312 2293 68 7 10 chr1 243880404 243880696 -38312968 - AluY SINE Alu -20 291 1 8489 113 3 3 chr1 243880696 243881821 -38311843 - L1PA8A LINE L1 -818 5313 4187 2157 134 0 0 chr1 243882060 243882359 -38311305 + AluSq SINE Alu 1 299 -14 816 183 0 35 chr1 243883172 243883314 -38310350 - AluY SINE Alu -17 294 158 1939 102 0 0 chr1 243883445 243883699 -38309965 - AluY SINE Alu -57 254 1 252 266 125 0 chr1 243885006 243885070 -38308594 - MIR SINE MIR -87 121 50 449 217 26 102 chr1 243885180 243885498 -38308166 - MLT1E LTR MaLR -243 300 20 370 206 108 0 chr1 243886474 243886576 -38307088 + MLT2B2 LTR ERVL 1 113 -402 515 109 7 175 chr1 243886576 243886630 -38307034 - L1 LINE L1 -1490 4656 4595 1687 180 7 10 chr1 243886630 243886925 -38306739 - AluJo SINE Alu -18 294 1 515 109 7 175 chr1 243886925 243886983 -38306681 - L1 LINE L1 -1551 4595 4529 3260 78 54 5 chr1 243886983 243887024 -38306640 - MLT2A1 LTR ERVL 0 444 406 186 43 0 0 chr1 243887024 243887047 -38306617 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 249 33 0 0 chr1 243887046 243887076 -38306588 + (TA)n Simple_repeat Simple_repeat 1 30 0 3260 78 54 5 chr1 243887047 243887457 -38306207 - MLT2A1 LTR ERVL -38 406 1 515 109 7 175 chr1 243887457 243887480 -38306184 - L1 LINE L1 -1616 4530 4543 2597 203 56 47 chr1 243887594 243887977 -38305687 + Zaphod DNA AcHobo 3289 3685 -346 2222 89 4 0 chr1 243887977 243888295 -38305369 + AluY SINE Alu 1 319 0 2597 203 56 47 chr1 243888295 243888638 -38305026 + Zaphod DNA AcHobo 3685 4023 -8 2163 112 0 14 chr1 243888910 243889205 -38304459 + AluSx SINE Alu 1 291 -21 1903 236 115 26 chr1 243889568 243890515 -38303149 + L1MC4 LINE L1 6459 7658 -384 257 256 3 150 chr1 243890705 243890879 -38302785 - MIR SINE MIR -62 146 5 2421 131 27 0 chr1 243892285 243892613 -38301051 + MER1B DNA MER1_type 1 337 0 1823 126 42 0 chr1 243893104 243893367 -38300297 + AluSx SINE Alu 1 274 -38 213 156 22 22 chr1 243894535 243894580 -38299084 + MIR SINE MIR 194 238 -24 1536 142 65 8 chr1 243895222 243895468 -38298196 + AluSq SINE Alu 1 260 -53 507 33 0 0 chr1 243896857 243896918 -38296746 + (TG)n Simple_repeat Simple_repeat 1 61 0 199 296 178 37 chr1 243898340 243898475 -38295189 - L2 LINE L2 -1 3312 3159 753 323 26 105 chr1 243899204 243899708 -38293956 + L2 LINE L2 2809 3272 0 813 215 46 46 chr1 243951949 243952168 -38241496 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 243953567 243953588 -38240076 + AT_rich Low_complexity Low_complexity 1 21 0 2087 143 0 0 chr1 243953984 243954278 -38239386 + AluSx SINE Alu 1 294 -18 309 390 35 4 chr1 243954282 243954510 -38239154 + HAL1 LINE L1 1373 1607 -900 507 95 0 0 chr1 243955633 243955707 -38237957 + (CA)n Simple_repeat Simple_repeat 2 75 0 1008 196 0 6 chr1 243955821 243955994 -38237670 - FAM SINE Alu -3 172 1 21 0 0 0 chr1 243955994 243956015 -38237649 + AT_rich Low_complexity Low_complexity 1 21 0 2013 122 3 10 chr1 243956031 243956326 -38237338 - AluSx SINE Alu -19 293 1 33 56 0 0 chr1 243956335 243956389 -38237275 + AT_rich Low_complexity Low_complexity 1 54 0 2381 96 3 0 chr1 243956631 243956934 -38236730 + AluSx SINE Alu 1 304 -8 274 173 48 48 chr1 243957680 243957701 -38235963 + (TA)n Simple_repeat Simple_repeat 2 22 -83 1801 176 3 7 chr1 243957701 243958003 -38235661 + AluJo SINE Alu 1 301 -11 274 173 48 48 chr1 243958003 243958085 -38235579 + (TA)n Simple_repeat Simple_repeat 21 105 0 764 158 6 92 chr1 243958617 243958781 -38234883 + FRAM SINE Alu 1 148 -28 1481 113 5 0 chr1 243959460 243959655 -38234009 - AluSx SINE Alu -116 196 1 476 335 64 63 chr1 243959749 243960409 -38233255 + L2 LINE L2 2346 3013 -259 1986 161 3 3 chr1 243960409 243960719 -38232945 - AluJb SINE Alu -2 310 1 476 335 64 63 chr1 243960719 243960971 -38232693 + L2 LINE L2 3013 3263 -9 331 357 71 34 chr1 243961124 243961502 -38232162 - L2 LINE L2 -8 3264 2873 2223 95 14 0 chr1 243962030 243962315 -38231349 + AluSq SINE Alu 1 289 -24 276 184 40 53 chr1 243963345 243963421 -38230243 + L2 LINE L2 3239 3313 0 980 184 60 0 chr1 243963973 243964174 -38229490 + MIR SINE MIR 2 214 -48 739 165 0 0 chr1 243964696 243964811 -38228853 + FLAM_A SINE Alu 1 115 -18 579 239 97 6 chr1 243965355 243965531 -38228133 + MIR SINE MIR 65 256 -6 2083 130 7 3 chr1 243965658 243965951 -38227713 - AluSx SINE Alu -18 294 1 953 263 39 41 chr1 243967409 243967747 -38225917 - LTR16A LTR ERVL -19 431 95 195 220 0 0 chr1 243968759 243968809 -38224855 + CT-rich Low_complexity Low_complexity 6 55 0 291 250 12 12 chr1 243969187 243969271 -38224393 + L2 LINE L2 3228 3311 -2 195 302 0 0 chr1 243971311 243971364 -38222300 + L2 LINE L2 3157 3209 -63 2726 80 8 0 chr1 243972478 243972830 -38220834 - THE1A LTR MaLR 0 355 1 417 273 32 26 chr1 243974215 243974369 -38219295 + L2 LINE L2 3158 3312 -1 206 320 0 13 chr1 243974524 243974599 -38219065 - MIR3 SINE MIR -133 75 2 1863 148 22 19 chr1 243975519 243975830 -38217834 + AluJo SINE Alu 1 312 0 204 241 224 9 chr1 243976439 243976555 -38217109 + MIR SINE MIR 120 260 -2 1030 124 12 6 chr1 243976631 243976800 -38216864 - L1MA7 LINE L1 0 6291 6122 247 314 41 66 chr1 243976811 243976932 -38216732 + L2 LINE L2 3134 3251 -21 503 275 90 53 chr1 243977530 243977640 -38216024 - MIR SINE MIR -2 260 156 2704 40 0 3 chr1 243977640 243977963 -38215701 - L1PA4 LINE L1 0 6155 5834 503 275 90 53 chr1 243977963 243978096 -38215568 - MIR SINE MIR -106 156 8 2105 109 0 34 chr1 243978933 243979249 -38214415 - AluSx SINE Alu 0 306 1 377 319 66 55 chr1 243979656 243980262 -38213402 - L2 LINE L2 -1305 2009 1397 225 276 66 26 chr1 243980361 243980437 -38213227 + L2 LINE L2 3184 3262 -10 425 365 151 7 chr1 243980523 243980939 -38212725 + L3 LINE CR1 1083 1558 -19 5139 145 18 15 chr1 243981326 243982149 -38211515 + LTR1B LTR ERV1 1 826 0 313 276 94 8 chr1 243982349 243982476 -38211188 + MIR SINE MIR 105 242 -20 4413 180 33 20 chr1 243982870 243983438 -38210226 + MER21B LTR ERV1 1 583 -280 2412 111 10 79 chr1 243983438 243983843 -38209821 - MER51B LTR ERV1 0 377 1 4413 180 33 20 chr1 243983843 243984069 -38209595 + MER21B LTR ERV1 583 805 -58 2490 87 0 0 chr1 243984078 243984390 -38209274 + AluSx SINE Alu 1 312 0 1543 194 4 11 chr1 243987614 243987892 -38205772 + AluJo SINE Alu 1 276 -36 1066 109 30 65 chr1 243991267 243991468 -38202196 - L1MA10 LINE L1 -2 6332 6139 265 59 0 0 chr1 243991469 243991503 -38202161 - AluSc SINE Alu -182 117 84 1045 206 14 9 chr1 243991503 243991722 -38201942 - AluJo SINE Alu -92 220 1 262 226 16 0 chr1 243991748 243991810 -38201854 - MIR SINE MIR -64 144 82 1608 257 148 45 chr1 243991930 243992947 -38200717 - HAL1 LINE L1 -425 2082 961 526 321 16 50 chr1 243992969 243993392 -38200272 - HAL1 LINE L1 -2090 417 9 35 0 0 0 chr1 243993394 243993429 -38200235 + AT_rich Low_complexity Low_complexity 1 35 0 381 243 126 0 chr1 243993697 243993800 -38199864 + L1MC/D LINE L1 5454 5569 -2239 450 234 57 57 chr1 243993802 243993943 -38199721 + MIR SINE MIR 120 260 -2 211 287 133 46 chr1 243995019 243995214 -38198450 - L3b LINE CR1 -94 1489 1278 411 299 227 14 chr1 243996257 243996464 -38197200 - MIR SINE MIR 0 262 12 186 400 35 0 chr1 243996392 243996477 -38197187 + MIR3 SINE MIR 7 94 -114 * 555 315 73 0 chr1 243996882 243997047 -38196617 - MIR3 SINE MIR -6 202 26 306 219 82 27 chr1 243997109 243997182 -38196482 - MIR SINE MIR -76 186 110 274 352 56 0 chr1 243997262 243997387 -38196277 - L2 LINE L2 -7 3265 3134 229 220 20 0 chr1 243997388 243997438 -38196226 + (TG)n Simple_repeat Simple_repeat 2 52 0 1807 135 32 73 chr1 243999281 243999327 -38194337 + MLT1C LTR MaLR 142 188 -279 1673 157 40 0 chr1 243999327 243999601 -38194063 + AluSx SINE Alu 1 285 -27 1807 135 32 73 chr1 243999601 243999894 -38193770 + MLT1C LTR MaLR 188 467 0 506 137 11 0 chr1 244000020 244000115 -38193549 + GA-rich Low_complexity Low_complexity 1 96 0 254 283 87 38 chr1 244001076 244001260 -38192404 - L3 LINE CR1 -222 1355 1163 554 82 0 0 chr1 244001308 244001381 -38192283 - L1PA6 LINE L1 -3526 2620 2548 * 21579 58 17 2 chr1 244001378 244004806 -38188858 + L1PA6 LINE L1 2620 6127 -4 24 0 0 0 chr1 244004806 244004830 -38188834 + AT_rich Low_complexity Low_complexity 1 24 0 244 254 107 25 chr1 244004848 244004970 -38188694 - L3 LINE CR1 -759 818 687 432 228 137 56 chr1 244006230 244006427 -38187237 + MIR SINE MIR 13 225 -37 1045 143 18 0 chr1 244006495 244006663 -38187001 + MER5A DNA MER1_type 1 171 -18 526 90 26 0 chr1 244007998 244008076 -38185588 - MADE1 DNA Mariner 0 80 1 478 212 71 0 chr1 244008638 244008751 -38184913 + MIR SINE MIR 72 192 -70 1814 152 16 13 chr1 244009287 244009597 -38184067 - AluSx SINE Alu -1 311 1 1965 67 67 0 chr1 244009773 244010040 -38183624 + AluY SINE Alu 12 296 -15 1987 112 4 0 chr1 244010051 244010329 -38183335 + AluSp SINE Alu 3 281 -32 225 0 0 0 chr1 244010329 244010354 -38183310 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 386 223 122 22 chr1 244010480 244010498 -38183166 - L1MA10 LINE L1 -2 6332 6315 627 264 119 0 chr1 244010498 244010759 -38182905 - L1ME1 LINE L1 -19 6147 5856 2904 159 84 5 chr1 244010762 244011260 -38182404 - L1MB3 LINE L1 -12 6171 5619 2671 96 8 6 chr1 244011260 244011623 -38182041 + THE1B LTR MaLR 1 364 0 2904 159 84 5 chr1 244011623 244011707 -38181957 - L1MB3 LINE L1 -564 5619 5543 2186 103 0 3 chr1 244011707 244012017 -38181647 - AluSg SINE Alu -1 309 1 188 281 0 18 chr1 244013264 244013321 -38180343 + L2 LINE L2 3209 3264 -8 245 206 176 15 chr1 244013479 244013547 -38180117 + MLT1C LTR MaLR 6 84 -383 190 138 0 0 chr1 244013812 244013841 -38179823 - MIR SINE MIR -64 144 116 916 203 269 33 chr1 244014387 244014751 -38178913 + MLT1C LTR MaLR 17 466 -1 553 258 161 9 chr1 244014964 244015181 -38178483 - MIR SINE MIR -11 251 2 247 294 96 37 chr1 244015496 244015632 -38178032 + L2 LINE L2 3128 3271 -1 1412 179 55 18 chr1 244016527 244016699 -38176965 - AluJo SINE Alu -9 303 116 491 0 17 0 chr1 244016699 244016758 -38176906 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 1412 179 55 18 chr1 244016758 244016859 -38176805 - AluJo SINE Alu -196 116 20 974 9 0 0 chr1 244016904 244017016 -38176648 - L1PA2 LINE L1 0 6155 6044 329 309 114 0 chr1 244017507 244017656 -38176008 - MIR3 SINE MIR -33 175 10 877 142 0 8 chr1 244020216 244020350 -38173314 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr1 244024550 244024570 -38169094 + (GGGTG)n Simple_repeat Simple_repeat 5 24 0 241 289 22 11 chr1 244027439 244027529 -38166135 + MER5B DNA MER1_type 11 101 -77 440 290 124 32 chr1 244027748 244027965 -38165699 - MIR SINE MIR 0 262 26 351 305 51 8 chr1 244028433 244028551 -38165113 + MIR SINE MIR 24 146 -62 383 243 76 35 chr1 244029207 244029351 -38164313 + L2 LINE L2 2932 3081 -191 235 263 13 26 chr1 244029475 244029551 -38164113 + GA-rich Low_complexity Low_complexity 2 76 0 347 250 104 10 chr1 244029816 244029912 -38163752 + L2 LINE L2 3161 3265 -7 659 197 66 0 chr1 244030972 244031109 -38162555 + MER103 DNA DNA 1 146 -20 327 195 207 35 chr1 244032610 244032697 -38160967 + MIR SINE MIR 16 117 -91 201 303 14 46 chr1 244032708 244032827 -38160837 + MER5B DNA MER1_type 1 163 -26 * 213 229 21 125 chr1 244032779 244032875 -38160789 - MER5A DNA MER1_type -103 86 1 282 258 41 21 chr1 244033996 244034093 -38159571 + MIR SINE MIR 164 262 0 265 252 71 55 chr1 244034108 244034235 -38159429 - L2 LINE L2 -249 3023 2895 589 280 111 4 chr1 244034265 244034498 -38159166 - MIR SINE MIR -6 256 1 187 337 208 0 chr1 244035223 244035324 -38158340 - L3b LINE CR1 -26 1557 1436 661 199 109 65 chr1 244035440 244035716 -38157948 + MLT1C LTR MaLR 1 288 -179 212 345 33 15 chr1 244035923 244036047 -38157617 + MIR SINE MIR 17 141 -67 271 333 12 0 chr1 244038452 244038533 -38155131 + L2 LINE L2 3185 3266 -6 215 305 152 0 chr1 244038528 244038633 -38155031 + MIR SINE MIR 72 192 -70 * 540 256 195 60 chr1 244038651 244039349 -38154315 + LTR50 LTR ERVL 1 792 -3 384 290 113 17 chr1 244039808 244039996 -38153668 - MIR SINE MIR -37 225 26 489 229 197 11 chr1 244041520 244041703 -38151961 - MIR SINE MIR -19 243 27 198 281 195 39 chr1 244041956 244042084 -38151580 + MIR SINE MIR 106 253 -9 243 196 272 43 chr1 244042661 244042753 -38150911 - MIR SINE MIR -105 157 45 512 276 30 59 chr1 244043388 244043484 -38150180 - L1M4 LINE L1 -840 5306 5209 777 218 186 0 chr1 244043484 244043672 -38149992 - MER58A DNA MER1_type 0 224 2 512 276 30 59 chr1 244043672 244043778 -38149886 - L1M4 LINE L1 -937 5209 5110 2390 60 0 0 chr1 244043778 244044098 -38149566 - AluY SINE Alu 0 311 1 718 193 0 15 chr1 244044099 244044234 -38149430 - AluJo/FLAM SINE Alu -179 133 1 297 217 24 48 chr1 244044260 244044343 -38149321 - MIR SINE MIR -64 144 64 1608 257 148 45 chr1 244044442 244045459 -38148205 - HAL1 LINE L1 -425 2082 961 526 321 16 50 chr1 244045481 244045904 -38147760 - HAL1 LINE L1 -2090 417 9 35 0 0 0 chr1 244045906 244045941 -38147723 + AT_rich Low_complexity Low_complexity 1 35 0 378 243 126 0 chr1 244046209 244046312 -38147352 + L1MC/D LINE L1 5454 5569 -2239 394 234 57 57 chr1 244046314 244046455 -38147209 + MIR SINE MIR 120 260 -2 336 310 206 0 chr1 244048813 244048968 -38144696 - MIR SINE MIR -56 206 20 490 315 73 0 chr1 244049394 244049559 -38144105 - MIR3 SINE MIR -6 202 26 273 219 82 27 chr1 244049621 244049694 -38143970 - MIR SINE MIR -76 186 110 232 352 56 0 chr1 244049774 244049899 -38143765 - L2 LINE L2 -7 3265 3134 229 220 20 0 chr1 244049900 244049950 -38143714 + (TG)n Simple_repeat Simple_repeat 2 52 0 1798 135 32 73 chr1 244051793 244051839 -38141825 + MLT1C LTR MaLR 142 188 -279 1787 157 40 0 chr1 244051839 244052113 -38141551 + AluSx SINE Alu 1 285 -27 1798 135 32 73 chr1 244052113 244052406 -38141258 + MLT1C LTR MaLR 188 467 0 506 137 11 0 chr1 244052532 244052627 -38141037 + GA-rich Low_complexity Low_complexity 1 96 0 2567 126 78 5 chr1 244052824 244053237 -38140427 - MER7C DNA MER2_type 0 602 160 605 128 0 135 chr1 244053311 244053452 -38140212 - MER7C DNA MER2_type -426 176 55 235 211 183 14 chr1 244053486 244053557 -38140107 - MIR SINE MIR -110 152 70 410 268 72 21 chr1 244054318 244054512 -38139152 + L2 LINE L2 2880 3083 -189 257 226 151 11 chr1 244054609 244054702 -38138962 + L2 LINE L2 3204 3309 -4 261 247 14 0 chr1 244056296 244056369 -38137295 - L2 LINE L2 -2 3311 3238 259 331 24 8 chr1 244056522 244056646 -38137018 + L2 LINE L2 2948 3073 -199 247 171 95 95 chr1 244057469 244057574 -38136090 - L2 LINE L2 0 3272 3168 868 136 0 41 chr1 244058246 244058393 -38135271 + FLAM_C SINE Alu 1 141 -2 2356 98 0 0 chr1 244059013 244059310 -38134354 + AluSg SINE Alu 1 297 -13 505 107 61 183 chr1 244060585 244060685 -38132979 - Charlie5 DNA MER1_type -1 2623 2557 2078 146 0 3 chr1 244060685 244060993 -38132671 + AluSx SINE Alu 1 307 -5 505 107 61 183 chr1 244060993 244061089 -38132575 - Charlie5 DNA MER1_type -67 2557 2451 923 114 0 22 chr1 244061160 244061344 -38132320 + (TA)n Simple_repeat Simple_repeat 1 180 0 548 250 9 0 chr1 244061567 244061679 -38131985 + MER81 DNA DNA 1 113 -1 340 280 0 30 chr1 244062717 244062817 -38130847 + GA-rich Low_complexity Low_complexity 3 99 0 1570 230 47 47 chr1 244062850 244063297 -38130367 + MLT1C LTR MaLR 19 465 -2 2380 81 0 16 chr1 244064008 244064317 -38129347 - AluY SINE Alu -7 304 1 724 188 28 21 chr1 244064524 244064668 -38128996 + MSTB LTR MaLR 1 145 -281 6877 68 7 1 chr1 244064774 244066300 -38127364 + L1PA6 LINE L1 4622 6154 0 1063 168 199 31 chr1 244066307 244066533 -38127131 + MLT1A1 LTR MaLR 48 311 -54 1848 129 66 0 chr1 244067451 244067722 -38125942 + AluSx SINE Alu 1 289 -23 213 39 0 0 chr1 244067940 244067966 -38125698 + (A)n Simple_repeat Simple_repeat 1 26 0 219 218 37 18 chr1 244068284 244068354 -38125310 - MIR SINE MIR -58 150 76 495 90 53 15 chr1 244070760 244070893 -38122771 + (TA)n Simple_repeat Simple_repeat 1 138 0 329 246 212 8 chr1 244071030 244071148 -38122516 + MER5A DNA MER1_type 48 189 0 203 174 47 47 chr1 244072257 244072343 -38121321 + A-rich Low_complexity Low_complexity 4 89 0 2070 108 3 42 chr1 244072557 244072863 -38120801 + AluSx SINE Alu 1 294 -18 356 255 38 19 chr1 244073755 244073861 -38119803 + MIR SINE MIR 25 132 -76 1798 194 18 3 chr1 244073898 244074238 -38119426 - MER7A DNA MER2_type -3 343 1 621 318 68 33 chr1 244074238 244074697 -38118967 - L2 LINE L2 -18 3295 2821 192 209 0 0 chr1 244074735 244074778 -38118886 + L2 LINE L2 3264 3306 -7 21 0 0 0 chr1 244074803 244074824 -38118840 + AT_rich Low_complexity Low_complexity 1 21 0 5854 39 0 0 chr1 244075938 244076665 -38116999 - L1P LINE L1 -2625 3521 2795 998 126 0 14 chr1 244076665 244076808 -38116856 - AluSc SINE Alu -168 141 1 257 70 47 0 chr1 244080734 244080777 -38112887 + T-rich Low_complexity Low_complexity 2 46 0 181 26 53 53 chr1 244081015 244081053 -38112611 + (TCTCTG)n Simple_repeat Simple_repeat 2 39 0 2616 108 12 42 chr1 244081453 244081862 -38111802 - L1PA11 LINE L1 -8 6166 5770 187 263 248 44 chr1 244082385 244082522 -38111142 + MIR3 SINE MIR 30 194 -14 349 236 0 45 chr1 244083069 244083179 -38110485 - MIR SINE MIR -50 212 108 2255 120 0 0 chr1 244083306 244083606 -38110058 + AluSx SINE Alu 1 300 -12 464 241 110 7 chr1 244083708 244083853 -38109811 - MER5A DNA MER1_type -2 187 28 2050 119 51 0 chr1 244086502 244086796 -38106868 + AluSx SINE Alu 1 309 -3 406 267 66 6 chr1 244086893 244087050 -38106614 + MIR SINE MIR 19 181 -59 2098 119 0 3 chr1 244088143 244088428 -38105236 - AluSx SINE Alu -28 284 1 532 199 14 89 chr1 244088593 244088674 -38104990 + MER5A DNA MER1_type 55 123 -66 2294 100 0 0 chr1 244088674 244088985 -38104679 - AluSg SINE Alu 0 311 1 532 199 14 89 chr1 244088985 244089048 -38104616 + MER5A DNA MER1_type 123 189 0 243 204 0 0 chr1 244090460 244090514 -38103150 + (CA)n Simple_repeat Simple_repeat 2 55 0 252 0 0 0 chr1 244092616 244092644 -38101020 + (A)n Simple_repeat Simple_repeat 1 28 0 235 156 22 0 chr1 244094101 244094146 -38099518 + MIR SINE MIR 103 148 -60 305 312 30 50 chr1 244094340 244094483 -38099181 - LTR67 LTR ERVL -2 555 416 1960 138 16 16 chr1 244094483 244094795 -38098869 + AluJo SINE Alu 1 312 0 305 312 30 50 chr1 244094795 244094850 -38098814 - LTR67 LTR ERVL -141 416 361 292 320 113 0 chr1 244094958 244095055 -38098609 - L2 LINE L2 -2 3270 3163 2013 240 171 29 chr1 244095065 244095889 -38097775 - L2 LINE L2 -251 3062 2128 1747 94 24 20 chr1 244096790 244097044 -38096620 - AluSp SINE Alu -20 293 39 1034 208 0 0 chr1 244097139 244097307 -38096357 + FAM SINE Alu 1 168 -7 261 215 0 0 chr1 244097500 244097506 -38096158 + (TG)n Simple_repeat Simple_repeat 2 7 -59 198 0 0 0 chr1 244097506 244097528 -38096136 + (TC)n Simple_repeat Simple_repeat 2 23 0 261 215 0 0 chr1 244097528 244097586 -38096078 + (TG)n Simple_repeat Simple_repeat 6 66 0 426 88 0 0 chr1 244097882 244097950 -38095714 + (CA)n Simple_repeat Simple_repeat 1 68 0 227 299 57 90 chr1 244098202 244098413 -38095251 - L2 LINE L2 -337 2977 2774 241 208 0 0 chr1 244098503 244098551 -38095113 - MIR SINE MIR -65 197 150 360 0 0 0 chr1 244099359 244099399 -38094265 + (TG)n Simple_repeat Simple_repeat 1 40 0 2127 162 40 3 chr1 244100412 244100764 -38092900 + MLT1A1 LTR MaLR 1 365 0 400 244 43 26 chr1 244101931 244102046 -38091618 + MIR SINE MIR 1 117 -145 336 241 12 0 chr1 244103148 244103231 -38090433 - MIR SINE MIR 0 262 179 185 243 0 0 chr1 244104993 244105030 -38088634 - MIR SINE MIR -9 253 217 304 307 57 14 chr1 244105216 244105356 -38088308 - MER5A DNA MER1_type -38 151 6 701 159 9 9 chr1 244105861 244105974 -38087690 + FLAM_C SINE Alu 11 123 -20 213 343 132 15 chr1 244107425 244107629 -38086035 - L2 LINE L2 -217 3055 2828 334 328 66 66 chr1 244107760 244108019 -38085645 + L2 LINE L2 3014 3272 0 351 242 66 115 chr1 244108927 244108993 -38084671 + MIR SINE MIR 24 92 -170 566 212 179 7 chr1 244108993 244109144 -38084520 - MER5B DNA MER1_type 0 178 2 351 242 66 115 chr1 244109144 244109259 -38084405 + MIR SINE MIR 92 196 -66 1289 39 26 0 chr1 244111506 244111693 -38081971 - L1PA4 LINE L1 0 6155 5996 199 296 59 59 chr1 244112175 244112344 -38081320 + MIR3 SINE MIR 16 184 -24 200 261 45 34 chr1 244113467 244113555 -38080109 - MIR SINE MIR -70 192 104 2736 62 3 0 chr1 244113627 244113952 -38079712 - L1PA8 LINE L1 -3 6169 5844 1127 188 30 5 chr1 244114100 244114302 -38079362 + MER3 DNA MER1_type 3 209 0 739 187 0 0 chr1 244114523 244114646 -38079018 + MER33 DNA MER1_type 1 123 -201 252 0 0 0 chr1 244114656 244114684 -38078980 + (TG)n Simple_repeat Simple_repeat 1 28 0 227 178 0 0 chr1 244114684 244114729 -38078935 - LTR66 LTR ERVL -172 438 394 29 28 0 0 chr1 244114760 244114796 -38078868 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr1 244114896 244114920 -38078744 + AT_rich Low_complexity Low_complexity 1 24 0 1231 133 0 0 chr1 244114920 244115093 -38078571 + AluSg/x SINE Alu 125 297 -15 667 184 107 167 chr1 244115093 244115392 -38078272 - L1MD2 LINE L1 -38 6204 5924 2167 116 3 3 chr1 244115394 244115695 -38077969 + AluSx SINE Alu 1 301 -11 423 292 92 24 chr1 244115715 244116171 -38077493 + L1M4 LINE L1 4342 4828 -1318 212 267 0 78 chr1 244116173 244116289 -38077375 + L2 LINE L2 2316 2422 -892 333 341 41 8 chr1 244117617 244117740 -38075924 + L2 LINE L2 3168 3294 -19 7259 236 55 12 chr1 244117965 244120061 -38073603 + L1M4 LINE L1 2404 4588 -1558 3569 132 9 4 chr1 244120161 244120692 -38072972 + L1MC1 LINE L1 5799 6332 -1 620 279 45 11 chr1 244121990 244122169 -38071495 + MIR SINE MIR 28 212 -50 412 301 28 53 chr1 244122883 244123054 -38070610 - MIR SINE MIR -63 145 11 26662 123 14 73 chr1 244123601 244128543 -38065121 + L1P LINE L1 13 4666 -1480 4223 195 22 4 chr1 244128643 244129564 -38064100 - L1 LINE L1 -2741 3405 2469 702 309 60 40 chr1 244129565 244129915 -38063749 - L2 LINE L2 0 3313 2957 2118 139 0 0 chr1 244129960 244130262 -38063402 + AluSx SINE Alu 1 302 -10 323 287 111 70 chr1 244130265 244130652 -38063012 - L2 LINE L2 -449 2865 2463 864 300 163 25 chr1 244130676 244131270 -38062394 - L2 LINE L2 -1273 2041 1366 2593 87 38 12 chr1 244131383 244131729 -38061935 - THE1A LTR MaLR 0 355 1 12702 86 8 6 chr1 244131729 244131807 -38061857 - THE1A-int LTR MaLR 0 1580 1504 2581 53 0 7 chr1 244131807 244132107 -38061557 - AluY SINE Alu -13 298 1 12702 86 8 6 chr1 244132107 244133604 -38060060 - THE1A-int LTR MaLR -76 1504 1 2419 81 61 35 chr1 244133604 244133753 -38059911 - THE1A LTR MaLR 0 355 211 2499 60 0 7 chr1 244133753 244134055 -38059609 + AluY SINE Alu 1 300 -11 2419 81 61 35 chr1 244134055 244134251 -38059413 - THE1A LTR MaLR -144 211 1 298 300 86 17 chr1 244134514 244134671 -38058993 + MIR SINE MIR 19 184 -63 312 258 52 88 chr1 244134703 244134903 -38058761 + MIR3 SINE MIR 1 212 -50 3540 139 0 2 chr1 244135548 244136046 -38057618 + LOR1a LTR ERV1 1 497 0 2726 3 0 0 chr1 244136487 244136777 -38056887 + AluYa5 SINE Alu 22 311 0 4305 151 42 14 chr1 244137353 244138095 -38055569 - L1MD1 LINE L1 -5 6631 5869 * 17738 39 1 8 chr1 244138087 244140919 -38052745 - L1PA4 LINE L1 -1 6154 3341 7515 210 84 66 chr1 244140943 244142655 -38051009 - L1MD1 LINE L1 -747 5793 4077 1734 174 3 16 chr1 244142655 244142965 -38050699 - AluJo SINE Alu -6 306 1 7515 210 84 66 chr1 244142965 244144294 -38049370 - L1MD1 LINE L1 -2463 4077 2773 2621 230 142 50 chr1 244144331 244144394 -38049270 - L1MD1 LINE L1 -5105 1435 1379 1412 209 40 7 chr1 244144394 244144690 -38048974 - AluJo SINE Alu -6 306 1 2621 230 142 50 chr1 244144690 244145535 -38048129 - L1MD1 LINE L1 -5161 1379 360 29598 69 4 4 chr1 244145636 244150292 -38043372 + L1PA6 LINE L1 1504 6152 -2 554 313 34 40 chr1 244150330 244150653 -38043011 - L2 LINE L2 -410 2904 2584 197 292 42 10 chr1 244150657 244150753 -38042911 - L2 LINE L2 -1226 2088 1990 229 376 62 5 chr1 244150984 244151178 -38042486 - L2 LINE L2 -1746 1568 1364 186 133 0 0 chr1 244151227 244151257 -38042407 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 304 280 68 45 chr1 244151292 244151424 -38042240 + MER91C DNA MER1_type 5 139 -1 261 260 211 8 chr1 244151692 244151815 -38041849 + L2 LINE L2 3164 3311 -2 271 347 101 30 chr1 244151836 244152332 -38041332 - L2 LINE L2 -2304 1010 480 24 0 0 0 chr1 244152457 244152481 -38041183 + AT_rich Low_complexity Low_complexity 1 24 0 519 218 104 47 chr1 244153148 244153341 -38040323 + L2 LINE L2 3092 3295 -18 226 215 51 13 chr1 244153362 244153441 -38040223 + MIR SINE MIR 120 201 -61 3994 16 2 0 chr1 244153537 244153973 -38039691 + L1PA2 LINE L1 5719 6155 0 1671 175 53 56 chr1 244155122 244155333 -38038331 + MER58B DNA MER1_type 1 212 -2208 2351 75 16 13 chr1 244155333 244155639 -38038025 - AluY SINE Alu 0 311 5 1671 175 53 56 chr1 244155639 244155769 -38037895 + MER58B DNA MER1_type 212 341 0 1458 137 67 56 chr1 244155972 244156256 -38037408 - AluJo SINE Alu -15 297 11 242 278 0 42 chr1 244156333 244156411 -38037253 - MIR SINE MIR -92 116 42 2413 63 0 20 chr1 244156602 244156903 -38036761 - AluY SINE Alu -16 295 1 1080 265 97 42 chr1 244158122 244158649 -38035015 - L2 LINE L2 0 3313 2740 837 262 52 0 chr1 244158698 244158908 -38034756 + MIR SINE MIR 36 256 -6 3016 170 10 0 chr1 244158947 244159453 -38034211 + L1MB3 LINE L1 5672 6182 -1 457 317 37 0 chr1 244159510 244159671 -38033993 + MIR3 SINE MIR 36 202 -6 180 210 161 16 chr1 244160077 244160139 -38033525 + MIR3 SINE MIR 86 156 -52 2195 105 3 16 chr1 244160538 244160852 -38032812 + AluY SINE Alu 1 310 -1 279 276 29 19 chr1 244161079 244161184 -38032480 + MIR SINE MIR 136 241 -21 208 308 31 0 chr1 244161782 244161847 -38031817 - MIR SINE MIR -112 150 84 787 253 70 12 chr1 244164367 244164608 -38029056 + MIR SINE MIR 5 259 -3 810 292 49 43 chr1 244164679 244165070 -38028594 + L2 LINE L2 2921 3313 0 196 250 69 69 chr1 244165061 244165177 -38028487 - L2 LINE L2 -160 3112 2997 * 218 350 81 83 chr1 244165464 244165669 -38027995 - L2 LINE L2 -265 3007 2778 29 28 0 0 chr1 244165730 244165766 -38027898 + AT_rich Low_complexity Low_complexity 1 36 0 438 277 7 39 chr1 244166163 244166318 -38027346 - L2 LINE L2 -1030 2284 2135 1126 266 74 65 chr1 244166397 244166909 -38026755 - LTR67 LTR ERVL -38 519 3 195 357 43 22 chr1 244166943 244167128 -38026536 - L2 LINE L2 -1406 1908 1720 3836 136 75 14 chr1 244168542 244169023 -38024641 - L1MA5 LINE L1 -2 6298 5763 405 0 0 0 chr1 244169023 244169068 -38024596 + (TG)n Simple_repeat Simple_repeat 1 45 0 3836 136 75 14 chr1 244169068 244169255 -38024409 - L1MA5 LINE L1 -537 5763 5589 2652 170 75 33 chr1 244169675 244170252 -38023412 - L1MC2 LINE L1 0 6344 5744 5086 49 8 3 chr1 244171070 244171665 -38021999 + L1PA7 LINE L1 5556 6153 -1 231 310 190 46 chr1 244171880 244172336 -38021328 - L2 LINE L2 -101 3171 2653 243 292 42 0 chr1 244172338 244172410 -38021254 + L2 LINE L2 1803 1877 -1437 1016 296 232 22 chr1 244172414 244172739 -38020925 + L2 LINE L2 1060 1316 -1998 2311 112 0 0 chr1 244172739 244173051 -38020613 + AluSx SINE Alu 1 312 0 1016 296 232 22 chr1 244173051 244173484 -38020180 + L2 LINE L2 1316 1977 -1337 504 224 221 20 chr1 244173486 244173768 -38019896 + L2 LINE L2 2750 3150 -163 1392 239 31 22 chr1 244173819 244174175 -38019489 - L1ME3 LINE L1 -6 6156 5798 527 211 49 0 chr1 244174178 244174301 -38019363 - MLT1H LTR MaLR 0 549 421 2887 139 49 10 chr1 244174301 244174811 -38018853 - L1MB3 LINE L1 -236 5947 5418 398 246 142 44 chr1 244175651 244175968 -38017696 - L1ME4a LINE L1 -121 6000 5653 1663 259 91 41 chr1 244175969 244177295 -38016369 - L1ME3A LINE L1 -37 6116 4716 684 240 55 95 chr1 244177300 244177700 -38015964 - L1ME3A LINE L1 -2572 3557 3174 768 230 88 33 chr1 244177705 244178107 -38015557 - L1MEc LINE L1 -3699 2430 2040 667 230 53 61 chr1 244178312 244178533 -38015131 - L1MEc LINE L1 -4447 1682 1461 2193 68 48 3 chr1 244178533 244178825 -38014839 - AluY SINE Alu -6 305 1 667 230 53 61 chr1 244178825 244178979 -38014685 - L1MEc LINE L1 -4668 1461 1307 325 309 80 96 chr1 244179092 244179393 -38014271 - LTR33 LTR ERVL -90 431 136 612 223 133 0 chr1 244179467 244179584 -38014080 - MER58C DNA MER1_type -2205 215 68 284 0 28 0 chr1 244179584 244179620 -38014044 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 612 223 133 0 chr1 244179620 244179668 -38013996 - MER58C DNA MER1_type -2352 68 28 562 320 32 38 chr1 244179686 244180220 -38013444 - L1MEc LINE L1 -4897 1222 692 244 156 0 0 chr1 244180274 244180319 -38013345 - LTR66 LTR ERVL -172 438 394 242 156 0 0 chr1 244180287 244180332 -38013332 + LTR66 LTR ERVL 394 438 -172 * 248 240 53 0 chr1 244180336 244180411 -38013253 + L1MC4 LINE L1 6625 6703 -1339 624 100 0 40 chr1 244180438 244180538 -38013126 - L1PA5 LINE L1 0 6154 6059 * 43946 48 2 6 chr1 244180507 244186652 -38007012 - L1PA5 LINE L1 -33 6121 1 825 249 79 52 chr1 244186808 244187137 -38006527 + MER46C DNA MER2_type 1 338 0 589 276 38 82 chr1 244187324 244187643 -38006021 - MLT1J LTR MaLR -204 307 3 468 322 48 19 chr1 244187673 244187881 -38005783 - MIR SINE MIR -45 217 4 260 292 101 11 chr1 244188271 244188360 -38005304 + L2 LINE L2 3170 3266 -6 226 321 7 29 chr1 244188670 244188807 -38004857 - MIR SINE MIR -56 206 73 253 273 125 74 chr1 244190386 244190562 -38003102 + MIR SINE MIR 63 247 -15 4070 121 63 13 chr1 244190880 244190992 -38002672 - L1MA7 LINE L1 -1 6290 6185 365 58 19 0 chr1 244190992 244191044 -38002620 + (TG)n Simple_repeat Simple_repeat 1 53 0 4070 121 63 13 chr1 244191044 244191601 -38002063 - L1MA7 LINE L1 -106 6185 5588 525 322 45 5 chr1 244191870 244192072 -38001592 - MIR SINE MIR -13 249 40 273 242 65 0 chr1 244192075 244192137 -38001527 - MIR SINE MIR -59 149 84 27252 46 1 2 chr1 244194216 244200355 -37993309 + L1PA4 LINE L1 1 6132 -23 252 0 0 0 chr1 244200398 244200426 -37993238 + (TAA)n Simple_repeat Simple_repeat 3 30 0 186 43 0 0 chr1 244201252 244201275 -37992389 + (T)n Simple_repeat Simple_repeat 1 23 0 234 0 0 0 chr1 244201802 244201828 -37991836 + (CA)n Simple_repeat Simple_repeat 1 26 0 235 132 38 0 chr1 244203141 244203194 -37990470 + L1ME LINE L1 5385 5439 -682 270 314 64 49 chr1 244203225 244203429 -37990235 + L1M4b LINE L1 33 239 -6620 252 316 52 19 chr1 244203746 244203901 -37989763 + L1M4b LINE L1 1029 1188 -5667 1360 192 117 29 chr1 244203998 244204310 -37989354 + L1M4b LINE L1 1229 1587 -5272 2460 64 3 0 chr1 244204310 244204606 -37989058 + AluY SINE Alu 1 297 -14 1360 192 117 29 chr1 244204606 244204704 -37988960 + L1M4b LINE L1 1587 1675 -5184 1096 106 24 0 chr1 244204704 244204874 -37988790 + L1MA5 LINE L1 6124 6297 -3 634 190 15 0 chr1 244205046 244205183 -37988481 + L1MA8 LINE L1 5885 6023 -268 * 5797 41 17 3 chr1 244205191 244205900 -37987764 - L1PA5 LINE L1 -2 6152 5434 5360 45 1 3 chr1 244205900 244207001 -37986663 - L1P2 LINE L1 -369 5785 4686 478 15 0 45 chr1 244207004 244207071 -37986593 + L1P LINE L1 3189 3252 -2894 * 563 271 40 65 chr1 244207060 244207432 -37986232 + L1M4b LINE L1 2340 2702 -4436 * 1431 247 31 23 chr1 244207406 244207433 -37986231 + L1M4b LINE L1 4397 4422 -2535 2322 103 3 0 chr1 244207433 244207733 -37985931 + AluY SINE Alu 1 301 -10 1431 247 31 23 chr1 244207733 244208187 -37985477 + L1M4b LINE L1 4422 4882 -2075 203 195 24 0 chr1 244208187 244208228 -37985436 + GA-rich Low_complexity Low_complexity 2 43 0 309 357 107 34 chr1 244208242 244208505 -37985159 + L1MC/D LINE L1 5487 5768 -2040 313 363 7 0 chr1 244209072 244209218 -37984446 - L2 LINE L2 -957 2357 2211 231 237 34 17 chr1 244210026 244210085 -37983579 + MIR SINE MIR 153 212 -50 1600 234 35 0 chr1 244210543 244210945 -37982719 + MER63B DNA MER1_type 16 431 -5 307 163 58 0 chr1 244210950 244211036 -37982628 + L1ME3A LINE L1 2877 2967 -3179 789 174 0 23 chr1 244211042 244211174 -37982490 + AluJ SINE Alu 1 129 -173 3340 104 8 16 chr1 244211174 244211819 -37981845 - L1PA8A LINE L1 -661 5470 4828 2309 72 8 94 chr1 244211819 244212192 -37981472 + L1PA8 LINE L1 5828 6169 -3 216 0 0 0 chr1 244212207 244212231 -37981433 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 977 213 0 0 chr1 244212231 244212405 -37981259 + AluJ SINE Alu 134 307 -5 878 294 72 54 chr1 244212529 244213449 -37980215 + L1ME3A LINE L1 3131 4074 -2072 7762 21 0 0 chr1 244213449 244214428 -37979236 + L1PA2 LINE L1 5177 6155 0 878 294 72 54 chr1 244214428 244214549 -37979115 + L1ME3A LINE L1 4074 4191 -1955 411 301 90 67 chr1 244214556 244214902 -37978762 + L1ME3A LINE L1 4696 5049 -1097 7501 73 20 1 chr1 244214962 244216713 -37976951 - L1PA6 LINE L1 -4 6465 4649 856 99 0 0 chr1 244216717 244216848 -37976816 - L1P LINE L1 -1400 4746 4616 6830 86 6 4 chr1 244216848 244217849 -37975815 - L1PA6 LINE L1 -1812 4649 3647 6482 120 2 10 chr1 244217850 244219106 -37974558 - L1PA6 LINE L1 -4003 2458 1212 277 264 11 0 chr1 244219148 244219239 -37974425 + L1ME3A LINE L1 5128 5219 -927 312 286 29 28 chr1 244219260 244219486 -37974178 + L1ME3A LINE L1 5281 5512 -650 562 317 27 27 chr1 244219501 244219832 -37973832 + L1ME3A LINE L1 5621 5951 -219 1495 253 106 6 chr1 244219906 244220380 -37973284 + L1MEc LINE L1 45 565 -5831 456 263 39 64 chr1 244220380 244220431 -37973233 + L1MEc LINE L1 897 948 -5448 2284 99 10 0 chr1 244220431 244220733 -37972931 - AluSp SINE Alu -6 307 3 456 263 39 64 chr1 244220733 244220962 -37972702 + L1MEc LINE L1 948 1170 -5226 2303 183 50 106 chr1 244220970 244221963 -37971701 + L1ME1 LINE L1 5158 6243 -91 7033 166 36 30 chr1 244222254 244223678 -37969986 + L1P LINE L1 11 1443 -4703 22 0 0 0 chr1 244223867 244223889 -37969775 + AT_rich Low_complexity Low_complexity 1 22 0 2187 144 110 100 chr1 244224764 244225366 -37968298 - LTR36 LTR ERV1 0 611 4 960 190 22 0 chr1 244225632 244225816 -37967848 - MER5A DNA MER1_type 0 189 2 312 316 60 8 chr1 244226095 244226228 -37967436 - MIR SINE MIR -6 256 117 249 290 243 0 chr1 244226465 244226634 -37967030 - MIR SINE MIR 0 262 53 2440 123 28 11 chr1 244226756 244227114 -37966550 - THE1B LTR MaLR 0 364 1 497 268 38 43 chr1 244227754 244227963 -37965701 - MIR SINE MIR -29 233 26 671 199 112 12 chr1 244228781 244228942 -37964722 + MER5A DNA MER1_type 7 183 -6 212 263 289 0 chr1 244228970 244229084 -37964580 + MIR SINE MIR 33 179 -83 4087 246 122 29 chr1 244229223 244230874 -37962790 + HAL1 LINE L1 16 1819 -688 4051 157 51 4 chr1 244230874 244231564 -37962100 + MER72 LTR ERV1 1 722 0 784 145 0 51 chr1 244232155 244232293 -37961371 + FLAM_C SINE Alu 1 131 -2 991 166 97 138 chr1 244233055 244233196 -37960468 + L1MD1 LINE L1 5777 5922 -2073 189 0 0 0 chr1 244233196 244233217 -37960447 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1876 139 10 36 chr1 244233219 244233528 -37960136 - AluSx SINE Alu -11 301 1 991 166 97 138 chr1 244233528 244233829 -37959835 + L1MD1 LINE L1 5923 6235 -1760 1958 102 0 15 chr1 244233829 244233996 -37959668 - AluSx SINE Alu -14 298 135 225 0 0 0 chr1 244233996 244234021 -37959643 + (TA)n Simple_repeat Simple_repeat 2 26 0 1958 102 0 15 chr1 244234021 244234119 -37959545 - AluSx SINE Alu -177 135 37 991 166 97 138 chr1 244234119 244234157 -37959507 + L1MD1 LINE L1 6235 7986 -9 4060 167 71 11 chr1 244234258 244235265 -37958399 + L1MB8 LINE L1 5119 6177 -1 375 222 54 17 chr1 244235237 244235384 -37958280 + L1ME2 LINE L1 5866 6008 -169 * 624 207 14 0 chr1 244235398 244235543 -37958121 + L1MA10 LINE L1 6169 6315 -19 237 315 177 31 chr1 244235575 244235829 -37957835 - L2 LINE L2 -8 3305 3015 375 345 41 0 chr1 244236101 244236246 -37957418 + L2 LINE L2 3116 3266 -6 207 259 136 12 chr1 244236948 244237029 -37956635 - MER5B DNA MER1_type 0 178 88 935 183 94 25 chr1 244237185 244237420 -37956244 + MER96B DNA MER1_type? 167 417 0 1974 132 14 3 chr1 244237440 244237729 -37955935 + AluSx SINE Alu 1 292 -20 581 76 0 0 chr1 244237910 244237989 -37955675 - L1PA8 LINE L1 -4 6168 6090 197 244 0 22 chr1 244238098 244238143 -37955521 + MIR SINE MIR 107 150 -58 336 259 208 51 chr1 244238691 244238907 -37954757 - MIR SINE MIR -2 260 11 387 260 66 102 chr1 244239523 244239719 -37953945 + MIR3 SINE MIR 5 193 -15 377 347 111 9 chr1 244239772 244239997 -37953667 - MIR SINE MIR 0 262 15 185 266 13 63 chr1 244240757 244240836 -37952828 - MIR SINE MIR -13 249 175 187 312 90 53 chr1 244240943 244241132 -37952532 - L2 LINE L2 -180 3092 2897 242 297 69 40 chr1 244241470 244241571 -37952093 + MIR SINE MIR 3 106 -156 207 269 19 0 chr1 244241747 244241799 -37951865 + CT-rich Low_complexity Low_complexity 1 53 0 190 154 0 39 chr1 244242068 244242120 -37951544 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 249 212 29 80 chr1 244242165 244242302 -37951362 - L1P4 LINE L1 -352 5809 5680 468 279 56 6 chr1 244242425 244242586 -37951078 - MLT1L LTR MaLR -10 605 437 408 283 11 62 chr1 244242666 244242843 -37950821 - MLT1L LTR MaLR -302 313 146 229 204 23 0 chr1 244242847 244242891 -37950773 - MER5B DNA MER1_type -8 170 126 1424 168 25 70 chr1 244243143 244243458 -37950206 + AluJo SINE Alu 1 301 -11 21 0 0 0 chr1 244243465 244243486 -37950178 + AT_rich Low_complexity Low_complexity 1 21 0 5798 42 0 0 chr1 244244615 244245498 -37948166 - L1PA4 LINE L1 -159 5996 5114 400 301 45 23 chr1 244245498 244245631 -37948033 - MIR SINE MIR -91 171 36 314 308 87 23 chr1 244246565 244246737 -37946927 + L1MEc LINE L1 377 559 -5837 795 242 99 10 chr1 244246799 244246994 -37946670 + L1MEc LINE L1 625 856 -5540 354 23 0 0 chr1 244246994 244247037 -37946627 + (CA)n Simple_repeat Simple_repeat 1 43 0 795 242 99 10 chr1 244247037 244247134 -37946530 + L1MEc LINE L1 856 943 -5453 3228 168 27 16 chr1 244247286 244248256 -37945408 - L1MB8 LINE L1 -330 5848 4871 396 298 66 28 chr1 244248844 244249025 -37944639 + MIR SINE MIR 48 235 -27 1265 269 156 36 chr1 244249074 244249580 -37944084 + MLT1G1 LTR MaLR 5 571 -24 247 331 83 25 chr1 244250864 244250985 -37942679 + MIR3 SINE MIR 76 203 -5 272 278 100 11 chr1 244251472 244251562 -37942102 + L2 LINE L2 3163 3260 -12 1546 165 12 4 chr1 244251619 244251867 -37941797 + AluJo SINE Alu 1 250 -62 6480 25 1 0 chr1 244253217 244254439 -37939225 - L1PA3 LINE L1 -167 5988 4766 254 154 0 0 chr1 244254439 244254478 -37939186 - MLT1A2 LTR MaLR -335 39 1 183 80 0 0 chr1 244254819 244254844 -37938820 + (TA)n Simple_repeat Simple_repeat 2 26 0 200 227 23 0 chr1 244255401 244255445 -37938219 - L2 LINE L2 -14 3299 3255 477 313 142 53 chr1 244255508 244255708 -37937956 + L3 LINE CR1 1051 1232 -345 1044 178 51 10 chr1 244255708 244255905 -37937759 - MER3 DNA MER1_type 0 209 5 477 313 142 53 chr1 244255905 244256119 -37937545 + L3 LINE CR1 1232 1502 -75 598 197 301 17 chr1 244256702 244256941 -37936723 - L2 LINE L2 -367 2947 2641 184 200 125 0 chr1 244257653 244257693 -37935971 - L2 LINE L2 -5 3308 3264 404 254 47 104 chr1 244258133 244258203 -37935461 - MIR SINE MIR -70 192 120 1773 147 29 23 chr1 244258203 244258509 -37935155 + AluSx SINE Alu 1 308 -4 404 254 47 104 chr1 244258509 244258631 -37935033 - MIR SINE MIR -142 120 11 22 35 0 0 chr1 244258786 244258815 -37934849 + AT_rich Low_complexity Low_complexity 1 29 0 3626 183 41 6 chr1 244259164 244259896 -37933768 + Charlie1 DNA MER1_type 1917 2674 -87 258 136 0 0 chr1 244259965 244260009 -37933655 - Charlie1 DNA MER1_type -84 2677 2634 * 283 190 52 0 chr1 244260005 244260063 -37933601 + Charlie1 DNA MER1_type 2697 2757 -4 804 202 0 0 chr1 244260142 244260271 -37933393 + AluJo SINE Alu 5 133 -179 1022 240 24 16 chr1 244260401 244260651 -37933013 + MIR SINE MIR 8 259 -3 203 204 0 20 chr1 244261212 244261261 -37932403 - L2 LINE L2 -4 3309 3262 192 300 126 58 chr1 244261388 244261578 -37932086 - L2 LINE L2 -159 3113 2911 674 233 8 8 chr1 244261578 244261707 -37931957 - MER45A DNA AcHobo 0 178 50 966 164 0 0 chr1 244262238 244262384 -37931280 + AluJo SINE Alu 137 282 -30 450 0 0 0 chr1 244262386 244262436 -37931228 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 354 226 165 17 chr1 244262815 244262930 -37930734 + MER97a DNA MER1_type? 1 132 -762 465 146 0 154 chr1 244262934 244263057 -37930607 + MLT1A2 LTR MaLR 1 104 -270 2181 187 86 49 chr1 244263205 244263583 -37930081 - MLT1D LTR MaLR 0 505 104 2282 113 0 0 chr1 244263583 244263885 -37929779 - AluSg SINE Alu -8 302 1 2181 187 86 49 chr1 244263885 244263993 -37929671 - MLT1D LTR MaLR -401 104 1 669 215 169 11 chr1 244264084 244264404 -37929260 - MLT1F LTR MaLR 0 567 138 216 246 135 56 chr1 244265304 244265430 -37928234 - MER5B DNA MER1_type -37 141 6 654 242 144 23 chr1 244265595 244265810 -37927854 - MIR SINE MIR -3 259 19 2884 240 55 89 chr1 244266082 244267369 -37926295 - L1MEc LINE L1 -4801 1595 352 1198 219 63 38 chr1 244267369 244267706 -37925958 + MSTD LTR MaLR 1 396 0 807 214 97 83 chr1 244267707 244267997 -37925667 - L1MEc LINE L1 -6041 355 62 260 269 0 43 chr1 244269526 244269619 -37924045 + GA-rich Low_complexity Low_complexity 2 90 0 1526 186 85 103 chr1 244271871 244272403 -37921261 + Charlie1b DNA MER1_type 2 523 0 621 290 54 18 chr1 244272458 244272679 -37920985 - MIR SINE MIR -23 239 11 281 362 57 0 chr1 244272829 244272934 -37920730 - L2 LINE L2 -24 3248 3138 647 270 122 20 chr1 244273808 244274201 -37919463 + L2 LINE L2 2217 2649 -665 293 331 40 13 chr1 244275525 244275676 -37917988 + L2 LINE L2 2521 2675 -639 529 281 35 69 chr1 244277531 244277734 -37915930 - MIR SINE MIR -13 249 54 656 212 151 11 chr1 244277964 244278143 -37915521 + MIR SINE MIR 59 262 0 186 322 25 54 chr1 244278516 244278627 -37915037 + MIR SINE MIR 17 137 -71 525 200 90 13 chr1 244279716 244279871 -37913793 + L1M4 LINE L1 5084 5250 -896 182 205 0 0 chr1 244281011 244281050 -37912614 + L2 LINE L2 3265 3303 -10 211 244 213 55 chr1 244282320 244282447 -37911217 - MIR SINE MIR -112 150 4 180 0 0 0 chr1 244283066 244283086 -37910578 + (A)n Simple_repeat Simple_repeat 1 20 0 503 324 51 4 chr1 244283371 244283603 -37910061 + MIR SINE MIR 11 262 0 24 0 0 0 chr1 244284179 244284203 -37909461 + AT_rich Low_complexity Low_complexity 1 24 0 547 0 0 0 chr1 244284294 244284358 -37909306 + L1PA2 LINE L1 6091 6154 -1 394 259 63 25 chr1 244284811 244284947 -37908717 + MIR SINE MIR 39 177 -62 260 323 0 10 chr1 244285508 244285604 -37908060 - MIR SINE MIR -154 108 14 999 267 102 29 chr1 244286517 244286891 -37906773 + MLT1J LTR MaLR 1 401 -110 195 188 0 0 chr1 244287044 244287076 -37906588 - L2 LINE L2 -10 3262 3231 295 338 63 53 chr1 244287961 244288168 -37905496 + L2 LINE L2 3057 3265 -7 566 308 62 5 chr1 244289365 244289560 -37904104 + MIR SINE MIR 48 253 -9 2081 146 7 0 chr1 244289650 244289959 -37903705 + AluSx SINE Alu 1 311 -1 843 183 0 0 chr1 244289971 244290151 -37903513 + GA-rich Low_complexity Low_complexity 1 180 0 186 71 0 0 chr1 244290262 244290290 -37903374 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 675 157 24 18 chr1 244291583 244291749 -37901915 - Charlie5 DNA MER1_type -66 2546 2380 920 166 104 0 chr1 244291817 244292010 -37901654 + L1MA9 LINE L1 6069 6281 -31 637 267 74 23 chr1 244292024 244292282 -37901382 + L1ME4a LINE L1 5843 6113 -8 260 217 101 0 chr1 244293124 244293193 -37900471 - L1ME LINE L1 -260 5861 5786 231 206 130 92 chr1 244293267 244293451 -37900213 + L1ME4a LINE L1 5931 6121 0 325 229 138 9 chr1 244293825 244293934 -37899730 + MIR3 SINE MIR 71 193 -15 818 262 107 51 chr1 244294320 244294732 -37898932 + MLT1J2 LTR MaLR 15 449 -1 2345 58 0 17 chr1 244294881 244295176 -37898488 + AluY SINE Alu 1 290 -21 3126 164 93 29 chr1 244295339 244295544 -37898120 - L1M2 LINE L1 -742 6260 6070 2085 97 50 0 chr1 244295544 244295822 -37897842 - AluSg SINE Alu -18 292 1 3126 164 93 29 chr1 244295822 244296444 -37897220 - L1M2 LINE L1 -932 6070 5408 944 163 26 9 chr1 244296439 244296666 -37896998 - L1M2 LINE L1 -2787 4061 3831 * 3906 43 0 0 chr1 244296671 244297116 -37896548 - L1PA3 LINE L1 -3 6152 5708 2502 203 25 10 chr1 244297117 244297932 -37895732 - L1M2 LINE L1 -3440 3408 2582 2759 149 40 28 chr1 244297941 244298519 -37895145 - L1M2 LINE L1 -4473 2376 1792 14257 148 54 21 chr1 244298527 244304003 -37889661 - L1PB1 LINE L1 -3 6864 1574 207 0 0 0 chr1 244304003 244304026 -37889638 + (TG)n Simple_repeat Simple_repeat 2 24 0 2067 92 0 15 chr1 244304028 244304299 -37889365 - AluSq SINE Alu -31 282 16 14257 148 54 21 chr1 244304299 244304853 -37888811 - L1PB1 LINE L1 -5293 1574 636 1259 142 5 0 chr1 244304855 244305052 -37888612 - L1PB1 LINE L1 -6663 200 3 1848 225 5 20 chr1 244305066 244305564 -37888100 - L1M2 LINE L1 -5023 1826 1339 1974 183 92 58 chr1 244306176 244306623 -37887041 - MLT1C LTR MaLR 0 467 6 411 313 75 7 chr1 244307092 244307239 -37886425 + L3 LINE CR1 1416 1572 -5 208 255 20 0 chr1 244307329 244307380 -37886284 - L2 LINE L2 -50 3263 3212 723 269 38 19 chr1 244308131 244308343 -37885321 + MIR SINE MIR 1 216 -46 528 231 72 76 chr1 244308342 244308593 -37885071 + L2 LINE L2 3062 3311 -2 * 1106 268 191 31 chr1 244308645 244309166 -37884498 + L2 LINE L2 2463 3088 -225 2566 60 0 0 chr1 244309166 244309465 -37884199 + AluY SINE Alu 1 299 -12 1106 268 191 31 chr1 244309465 244309629 -37884035 + L2 LINE L2 3088 3224 -89 880 340 104 26 chr1 244310122 244310956 -37882708 - L2 LINE L2 0 3272 2367 520 307 90 20 chr1 244311077 244311321 -37882343 - MIR SINE MIR 0 262 2 2306 83 24 0 chr1 244311336 244311503 -37882161 - AluY SINE Alu -14 297 119 441 0 0 0 chr1 244311503 244311552 -37882112 + (TG)n Simple_repeat Simple_repeat 2 50 0 2306 83 24 0 chr1 244311552 244311674 -37881990 - AluY SINE Alu -192 119 1 203 138 0 0 chr1 244311854 244311883 -37881781 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1579 176 36 33 chr1 244312068 244312399 -37881265 + AluJb SINE Alu 1 312 0 384 192 13 0 chr1 244313488 244313566 -37880098 - L2 LINE L2 -8 3305 3227 567 273 100 35 chr1 244314007 244314238 -37879426 + MER112 DNA MER1_type 2 247 -13 27 29 0 0 chr1 244315568 244315602 -37878062 + AT_rich Low_complexity Low_complexity 1 34 0 233 339 113 17 chr1 244315872 244316049 -37877615 - L2 LINE L2 -220 3052 2859 242 245 264 45 chr1 244316063 244316218 -37877446 - MER5A DNA MER1_type 0 189 1 767 181 50 22 chr1 244316821 244317003 -37876661 - MER53 DNA DNA 0 189 3 1032 170 0 50 chr1 244317423 244317605 -37876059 + FAM SINE Alu 1 173 -2 24 0 0 0 chr1 244317808 244317832 -37875832 + AT_rich Low_complexity Low_complexity 1 24 0 2922 3 0 0 chr1 244318513 244318824 -37874840 + AluYa5 SINE Alu 1 311 0 337 239 103 32 chr1 244319217 244319372 -37874292 + L1ME4a LINE L1 5950 6115 -6 754 308 114 61 chr1 244319983 244321068 -37872596 - L2 LINE L2 -37 3235 2027 315 256 186 39 chr1 244321121 244321277 -37872387 - MER104 DNA Tc2 0 180 2 232 326 53 15 chr1 244321283 244321415 -37872249 - L2 LINE L2 -1370 1944 1808 1646 131 41 8 chr1 244321865 244322109 -37871555 + AluSg SINE Alu 44 295 -15 1226 249 123 31 chr1 244323656 244324105 -37869559 - MLT1J LTR MaLR 0 511 22 204 316 74 0 chr1 244324133 244324228 -37869436 + L2 LINE L2 3162 3263 -9 241 281 21 62 chr1 244324320 244324416 -37869248 + MIR SINE MIR 94 185 -77 527 241 24 42 chr1 244324431 244324527 -37869137 - MIR SINE MIR -8 254 161 2125 168 24 51 chr1 244324527 244324755 -37868909 - MLT1A1 LTR MaLR 0 365 149 2202 136 0 0 chr1 244324755 244325064 -37868600 - AluSq SINE Alu -4 309 1 2125 168 24 51 chr1 244325064 244325210 -37868454 - MLT1A1 LTR MaLR -216 149 1 527 241 24 42 chr1 244325210 244325279 -37868385 - MIR SINE MIR -101 161 92 203 235 78 0 chr1 244325296 244325347 -37868317 - L2 LINE L2 -4 3268 3214 232 319 127 12 chr1 244325441 244325607 -37868057 - L2 LINE L2 -236 3036 2852 2447 39 4 0 chr1 244326442 244326741 -37866923 - AluY SINE Alu 0 300 1 533 272 204 31 chr1 244326778 244327072 -37866592 + L2 LINE L2 2924 3268 -4 1434 145 8 34 chr1 244328958 244329193 -37864471 - AluJo SINE Alu -10 302 74 1241 218 108 80 chr1 244329204 244329705 -37863959 - MLT1H1 LTR MaLR 0 555 41 1959 172 8 24 chr1 244330746 244331119 -37862545 - MLT1A1 LTR MaLR -2 624 1 442 248 221 0 chr1 244331504 244331730 -37861934 - L2 LINE L2 -13 3300 3025 204 274 32 16 chr1 244334162 244334224 -37859440 + MIR3 SINE MIR 112 174 -34 633 314 159 13 chr1 244334597 244334906 -37858758 + L3 LINE CR1 1208 1561 -16 474 286 99 33 chr1 244335666 244335879 -37857785 + MIR SINE MIR 36 262 0 360 274 85 39 chr1 244336454 244336607 -37857057 - MIR SINE MIR -58 204 45 504 296 13 0 chr1 244336953 244337121 -37856543 + MIR SINE MIR 8 177 -60 3017 55 3 8 chr1 244337124 244337488 -37856176 - L1PA8 LINE L1 -5 6167 5806 258 236 127 0 chr1 244338793 244338848 -37854816 + MIR SINE MIR 22 83 -179 453 301 89 0 chr1 244339097 244339220 -37854444 + MIR SINE MIR 12 145 -117 225 245 0 0 chr1 244339269 244339318 -37854346 + (ATG)n Simple_repeat Simple_repeat 3 51 0 193 147 59 0 chr1 244340526 244340560 -37853104 - MIR SINE MIR -192 70 35 1976 129 4 0 chr1 244340988 244341259 -37852405 - AluSp SINE Alu -41 272 1 2277 98 0 3 chr1 244341417 244341723 -37851941 - AluSx SINE Alu -7 305 1 237 369 48 10 chr1 244341982 244342085 -37851579 - MIR SINE MIR -84 124 18 15264 201 18 41 chr1 244342091 244346227 -37847437 - L1PA16 LINE L1 -2 6867 2637 2839 3 7 0 chr1 244346227 244346533 -37847131 - AluYa5 SINE Alu -3 308 1 15264 201 18 41 chr1 244346533 244346567 -37847097 - L1PA16 LINE L1 -4232 2637 2604 2115 127 57 73 chr1 244346567 244346937 -37846727 + THE1B LTR MaLR 1 364 0 15264 201 18 41 chr1 244346937 244347336 -37846328 - L1PA16 LINE L1 -4265 2604 2197 2030 159 76 6 chr1 244347336 244347651 -37846013 - MER1B DNA MER1_type 0 337 1 15264 201 18 41 chr1 244347651 244348326 -37845338 - L1PA16 LINE L1 -4672 2197 1639 189 0 0 0 chr1 244348326 244348347 -37845317 + (TG)n Simple_repeat Simple_repeat 2 22 0 15264 201 18 41 chr1 244348347 244348568 -37845096 - L1PA16 LINE L1 -5230 1639 1414 1308 218 17 44 chr1 244349021 244349319 -37844345 - L1PA16 LINE L1 -6116 733 444 221 303 34 34 chr1 244350061 244350150 -37843514 - L2 LINE L2 -208 3064 2976 426 101 0 0 chr1 244352599 244352668 -37840996 + (TG)n Simple_repeat Simple_repeat 2 70 0 1695 146 15 4 chr1 244352673 244352941 -37840723 - MSTA LTR MaLR 0 428 158 194 299 52 13 chr1 244353552 244353629 -37840035 - MIR SINE MIR -63 145 66 243 333 74 0 chr1 244355203 244355311 -37838353 + MIR3 SINE MIR 89 204 -4 226 281 0 70 chr1 244355479 244355593 -37838071 - MIR SINE MIR -68 194 89 2293 110 0 19 chr1 244356449 244356766 -37836898 + AluSx SINE Alu 1 311 -1 2116 135 122 20 chr1 244357649 244358041 -37835623 + MSTB1 LTR MaLR 1 432 0 13674 159 28 17 chr1 244359498 244360818 -37832846 + L1MA5 LINE L1 2658 3961 -2339 2298 97 0 9 chr1 244360818 244361139 -37832525 + L1PB1 LINE L1 5834 6151 0 13674 159 28 17 chr1 244361139 244361398 -37832266 + L1MA5 LINE L1 3961 4216 -2084 225 0 0 0 chr1 244361398 244361423 -37832241 + (CA)n Simple_repeat Simple_repeat 2 26 0 13674 159 28 17 chr1 244361423 244362652 -37831012 + L1MA5 LINE L1 4216 5515 -785 2230 102 3 7 chr1 244362652 244362992 -37830672 + AluSx SINE Alu 1 312 0 13674 159 28 17 chr1 244362992 244363536 -37830128 + L1MA5 LINE L1 5515 6051 -249 535 182 83 8 chr1 244363538 244363659 -37830005 + L1MA4 LINE L1 6165 6294 -6 1212 163 79 0 chr1 244363668 244363908 -37829756 + L1MA5 LINE L1 6037 6295 -5 576 334 141 25 chr1 244363917 244364660 -37829004 - L2 LINE L2 -17 3296 2452 194 289 26 13 chr1 244364659 244364735 -37828929 + L2 LINE L2 3196 3272 0 * 3396 96 103 49 chr1 244365362 244365936 -37827728 + LTR14B LTR ERVK 4 608 0 1096 179 5 21 chr1 244366991 244367181 -37826483 - MER58A DNA MER1_type -1 223 37 216 221 29 15 chr1 244367192 244367260 -37826404 - MIR SINE MIR -58 204 136 5129 92 43 30 chr1 244367310 244368116 -37825548 - L1MA3 LINE L1 0 6305 5489 552 262 7 7 chr1 244368119 244368260 -37825404 - MIR SINE MIR -120 142 2 195 258 0 32 chr1 244368340 244368402 -37825262 + MIR SINE MIR 109 168 -94 821 176 0 0 chr1 244368409 244368545 -37825119 - FRAM SINE Alu -41 135 1 1939 119 0 52 chr1 244369704 244369878 -37823786 - AluJb SINE Alu -13 299 118 180 0 0 0 chr1 244369878 244369898 -37823766 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2110 106 29 0 chr1 244369898 244370173 -37823491 - AluSp SINE Alu -30 283 1 1939 119 0 52 chr1 244370173 244370307 -37823357 - AluJb SINE Alu -192 120 6 569 253 79 57 chr1 244370700 244370965 -37822699 - LTR33A LTR ERVL -252 271 1 185 366 16 8 chr1 244371054 244371177 -37822487 + L2 LINE L2 2976 3099 -173 821 231 24 6 chr1 244371846 244372015 -37821649 + MLT1E LTR MaLR 283 454 -139 309 200 133 0 chr1 244372017 244372107 -37821557 + L1M4 LINE L1 2608 2709 -3437 1057 173 91 5 chr1 244372107 244372304 -37821360 - MER20 DNA MER1_type -5 214 1 1010 226 59 6 chr1 244372305 244372682 -37820982 + L1M4 LINE L1 3855 4338 -1808 918 128 0 27 chr1 244373314 244373462 -37820202 - AluJb SINE Alu -1 311 168 302 279 153 75 chr1 244373463 244373796 -37819868 - L2 LINE L2 -371 2943 2585 754 173 7 0 chr1 244373932 244374071 -37819593 + AluSg/x SINE Alu 170 309 0 192 250 0 0 chr1 244374077 244374117 -37819547 + L2 LINE L2 3230 3269 -3 231 269 0 30 chr1 244374477 244374544 -37819120 - L2 LINE L2 -4 3268 3204 250 278 93 36 chr1 244374631 244374825 -37818839 + L2 LINE L2 1297 1501 -1813 738 188 102 0 chr1 244375458 244375586 -37818078 + FRAM SINE Alu 18 158 -18 1835 122 8 0 chr1 244375586 244375840 -37817824 - AluSx SINE Alu -17 295 40 293 200 59 12 chr1 244375868 244375953 -37817711 - MIR SINE MIR -172 90 2 439 315 20 26 chr1 244376009 244376204 -37817460 + MIR SINE MIR 12 206 -56 26 50 0 0 chr1 244377340 244377380 -37816284 + AT_rich Low_complexity Low_complexity 1 40 0 2322 108 7 0 chr1 244377423 244377719 -37815945 + AluSq SINE Alu 1 298 -15 848 133 0 60 chr1 244378569 244378599 -37815065 + Charlie3 DNA MER1_type 2561 2591 -111 1951 147 10 7 chr1 244378599 244378898 -37814766 + AluSx SINE Alu 1 300 -12 848 133 0 60 chr1 244378898 244379018 -37814646 + Charlie3 DNA MER1_type 2591 2702 0 303 313 30 10 chr1 244379041 244379140 -37814524 - MER5A DNA MER1_type -80 109 9 259 287 0 11 chr1 244379217 244379304 -37814360 + MER5B DNA MER1_type 69 154 -24 633 191 86 117 chr1 244379308 244379459 -37814205 - MER112 DNA MER1_type -4 256 115 2266 112 3 0 chr1 244379459 244379754 -37813910 + AluSq SINE Alu 1 296 -17 633 191 86 117 chr1 244379754 244379859 -37813805 - MER112 DNA MER1_type -145 115 8 2180 105 20 0 chr1 244379947 244380253 -37813411 - AluSx SINE Alu 0 312 1 337 228 96 52 chr1 244380462 244380598 -37813066 - L1ME LINE L1 -348 5822 5681 360 285 33 20 chr1 244380614 244380765 -37812899 + MER20B DNA MER1_type 1 153 -630 323 337 56 5 chr1 244380901 244381097 -37812567 - L1ME LINE L1 -613 5551 5346 384 182 26 0 chr1 244381098 244381175 -37812489 - AluJ/FRAM SINE Alu -1 301 223 228 324 34 50 chr1 244381494 244381673 -37811991 - MIR SINE MIR -31 231 56 203 299 108 31 chr1 244381837 244381967 -37811697 - MIR SINE MIR -62 146 17 2952 166 12 63 chr1 244382024 244382191 -37811473 + MER68 LTR ERV1 1 175 -387 2248 79 4 0 chr1 244382191 244382500 -37811164 - AluY SINE Alu 0 310 1 2952 166 12 63 chr1 244382500 244382921 -37810743 + MER68 LTR ERV1 175 560 -2 2065 137 3 0 chr1 244383079 244383371 -37810293 + AluSx SINE Alu 1 293 -19 1864 90 7 47 chr1 244383389 244383700 -37809964 + AluSq SINE Alu 18 317 0 2287 81 21 0 chr1 244383804 244384088 -37809576 - AluY SINE Alu -21 290 1 914 114 20 20 chr1 244384089 244384238 -37809426 - MLT1A1 LTR MaLR -205 160 12 1900 205 9 2 chr1 244384288 244384718 -37808946 - L1ME LINE L1 -1053 5093 4661 576 181 95 0 chr1 244384745 244384850 -37808814 + FLAM_C SINE Alu 1 115 -18 2121 109 81 32 chr1 244384850 244385196 -37808468 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr1 244385204 244385224 -37808440 + (A)n Simple_repeat Simple_repeat 1 20 0 837 152 73 55 chr1 244385240 244385405 -37808259 + FRAM SINE Alu 1 163 -13 912 204 0 0 chr1 244385405 244385567 -37808097 - MLT1A1 LTR MaLR -1 364 203 211 270 198 54 chr1 244386827 244387105 -37806559 - L2 LINE L2 -27 3245 2928 997 201 11 0 chr1 244387638 244387817 -37805847 + MLT1A1 LTR MaLR 185 365 0 1786 164 0 35 chr1 244387826 244388136 -37805528 - AluJo SINE Alu -13 299 1 1402 226 9 3 chr1 244388231 244388559 -37805105 + L1M4 LINE L1 4810 5139 -1007 344 82 41 0 chr1 244388563 244388612 -37805052 + L1MC1 LINE L1 6274 6324 -9 2123 180 60 0 chr1 244388624 244389040 -37804624 - Charlie1b DNA MER1_type -52 471 31 765 209 52 23 chr1 244389040 244389212 -37804452 + MER63A DNA MER1_type 1 177 -33 1402 167 5 89 chr1 244390653 244390790 -37802874 - L1M4 LINE L1 -743 5403 5256 2140 116 0 0 chr1 244390790 244391065 -37802599 + AluSx SINE Alu 21 295 -17 1402 167 5 89 chr1 244391065 244391310 -37802354 - L1M4 LINE L1 -890 5256 5053 676 158 136 172 chr1 244391493 244391847 -37801817 + MER58B DNA MER1_type 1 341 0 204 125 0 0 chr1 244393654 244393686 -37799978 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 0 0 0 chr1 244393848 244393874 -37799790 + AT_rich Low_complexity Low_complexity 1 26 0 270 227 47 33 chr1 244396514 244396664 -37797000 + (CACAC)n Simple_repeat Simple_repeat 2 153 0 180 0 0 0 chr1 244399526 244399546 -37794118 + (T)n Simple_repeat Simple_repeat 1 20 0 2064 153 0 0 chr1 244399621 244399916 -37793748 + AluSx SINE Alu 1 295 -17 276 53 0 0 chr1 244399933 244399971 -37793693 + (A)n Simple_repeat Simple_repeat 1 38 0 2363 85 0 3 chr1 244401307 244401602 -37792062 + AluSq SINE Alu 3 296 -17 478 308 93 34 chr1 244401739 244401976 -37791688 - MIR SINE MIR -6 256 6 238 286 112 10 chr1 244403688 244403786 -37789878 + MIR SINE MIR 20 127 -81 243 189 242 21 chr1 244404005 244404100 -37789564 - L2 LINE L2 0 3313 3198 205 331 15 23 chr1 244404319 244404449 -37789215 + MIR SINE MIR 64 192 -70 327 216 39 0 chr1 244405116 244405247 -37788417 + (CGG)n Simple_repeat Simple_repeat 1 136 0 387 250 18 67 chr1 244405571 244405735 -37787929 - MIR SINE MIR -70 192 37 186 43 0 0 chr1 244405736 244405759 -37787905 + (TC)n Simple_repeat Simple_repeat 2 24 0 2029 93 48 3 chr1 244405766 244406055 -37787609 - AluSc SINE Alu -7 302 1 302 270 9 70 chr1 244406138 244406253 -37787411 + MIR SINE MIR 53 160 -102 187 333 37 25 chr1 244406531 244406612 -37787052 + MIR SINE MIR 157 238 -24 1677 157 0 53 chr1 244406672 244406972 -37786692 - AluJo SINE Alu -24 288 5 467 265 224 41 chr1 244407451 244407475 -37786189 - MIR SINE MIR 0 262 244 2172 141 0 0 chr1 244407475 244407774 -37785890 - AluSx SINE Alu -13 299 1 467 265 224 41 chr1 244407774 244407968 -37785696 - MIR SINE MIR -18 244 4 648 251 120 22 chr1 244409698 244409920 -37783744 - L1ME1 LINE L1 -2 6176 5895 2109 120 10 3 chr1 244409920 244410220 -37783444 + AluSq SINE Alu 1 302 -11 648 251 120 22 chr1 244410220 244410327 -37783337 - L1ME1 LINE L1 -283 5895 5800 289 174 47 12 chr1 244410324 244410410 -37783254 + L1M4 LINE L1 4962 5050 -1096 * 1979 195 57 43 chr1 244410450 244411101 -37782563 - L1ME1 LINE L1 -374 5792 5132 403 208 13 0 chr1 244411240 244411317 -37782347 - FRAM/FAM SINE Alu -99 77 1 314 178 66 132 chr1 244411332 244411484 -37782180 - L1M4 LINE L1 -816 5330 5189 2045 88 29 0 chr1 244411529 244411728 -37781936 - AluY SINE Alu 0 331 119 242 29 29 0 chr1 244411728 244411763 -37781901 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 2045 88 29 0 chr1 244411763 244411886 -37781778 - AluY SINE Alu -212 119 1 291 28 0 0 chr1 244412008 244412044 -37781620 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1640 159 22 25 chr1 244412052 244412329 -37781335 - AluJo SINE Alu -36 276 1 320 276 52 69 chr1 244412415 244412589 -37781075 - L1M4 LINE L1 -1324 4822 4652 434 288 132 14 chr1 244412591 244412810 -37780854 - L1M4 LINE L1 -1887 4259 4015 623 304 98 26 chr1 244412811 244413123 -37780541 - MLT1H1 LTR MaLR -203 392 16 520 231 114 12 chr1 244413343 244413598 -37780066 - L1MDa LINE L1 -3651 2889 2609 2306 92 7 0 chr1 244413809 244414112 -37779552 - AluY SINE Alu -6 305 1 316 290 36 29 chr1 244414339 244414477 -37779187 - L1MDa LINE L1 -4440 2100 1962 617 273 45 41 chr1 244414480 244414700 -37778964 - L1MDa LINE L1 -5460 1070 850 267 319 7 7 chr1 244414889 244415027 -37778637 - L1MDa LINE L1 -5941 589 452 1710 120 24 0 chr1 244415109 244415359 -37778305 + AluSq SINE Alu 5 260 -53 1953 145 7 10 chr1 244415431 244415728 -37777936 + AluJb SINE Alu 1 296 -16 216 61 20 41 chr1 244415927 244415976 -37777688 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 84 0 0 0 chr1 244415976 244416060 -37777604 + AT_rich Low_complexity Low_complexity 1 84 0 213 17 35 69 chr1 244416060 244416118 -37777546 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr1 244416901 244416927 -37776737 + AT_rich Low_complexity Low_complexity 1 26 0 699 273 49 5 chr1 244417072 244417277 -37776387 + MIR SINE MIR 48 261 -1 195 42 0 0 chr1 244417279 244417303 -37776361 + (CAT)n Simple_repeat Simple_repeat 3 26 0 804 239 94 17 chr1 244417348 244417582 -37776082 + MIR SINE MIR 11 262 0 1627 117 110 13 chr1 244418185 244418405 -37775259 + MER44D DNA MER2_type 1 198 -2293 1475 112 63 5 chr1 244418405 244418628 -37775036 + MER46A DNA MER2_type 1 236 0 1627 117 110 13 chr1 244418628 244418715 -37774949 + MER44D DNA MER2_type 198 608 -1 1139 191 4 44 chr1 244418975 244419200 -37774464 + AluJo SINE Alu 6 221 -91 279 362 39 8 chr1 244419214 244419341 -37774323 + L2 LINE L2 1890 2020 -1294 253 79 0 0 chr1 244419378 244419416 -37774248 - tRNA-Gly-GGA tRNA tRNA -37 38 1 194 342 105 77 chr1 244419742 244419937 -37773727 + L2 LINE L2 2308 2496 -818 2196 93 0 0 chr1 244419937 244420217 -37773447 + AluSg SINE Alu 1 280 -30 306 0 0 0 chr1 244420220 244420254 -37773410 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 194 342 105 77 chr1 244420254 244420519 -37773145 + L2 LINE L2 2497 2785 -529 180 319 56 62 chr1 244420545 244420689 -37772975 + L2 LINE L2 2917 3059 -213 324 242 116 0 chr1 244421086 244421181 -37772483 + MIR SINE MIR 52 157 -105 2513 62 7 0 chr1 244421712 244422020 -37771644 - AluY SINE Alu -1 310 1 995 206 0 0 chr1 244422020 244422180 -37771484 - AluJo/FRAM SINE Alu -20 292 130 326 172 16 0 chr1 244422428 244422492 -37771172 - FLAM_A SINE Alu -3 130 66 420 313 0 0 chr1 244422576 244422688 -37770976 + MIR SINE MIR 150 261 -1 255 324 51 9 chr1 244424300 244424516 -37769148 + L1M4 LINE L1 3315 3539 -2607 414 297 79 24 chr1 244424650 244424815 -37768849 - MIR SINE MIR -61 201 28 25 75 0 0 chr1 244424938 244424991 -37768673 + AT_rich Low_complexity Low_complexity 1 53 0 389 313 37 125 chr1 244425401 244425778 -37767886 - L2 LINE L2 -1 3271 2928 270 362 50 50 chr1 244425844 244425985 -37767679 - L2 LINE L2 -10 3262 3122 2553 56 0 3 chr1 244426096 244426398 -37767266 + AluY SINE Alu 1 301 -10 322 358 19 25 chr1 244426809 244426971 -37766693 + L3 LINE CR1 1417 1577 0 207 180 40 0 chr1 244427083 244427133 -37766531 + (TTATA)n Simple_repeat Simple_repeat 4 55 0 1352 192 64 15 chr1 244427363 244427629 -37766035 - AluJb SINE Alu -33 279 1 360 133 67 0 chr1 244428584 244428644 -37765020 - AluJ/FRAM SINE Alu -13 289 226 377 213 0 0 chr1 244428644 244428724 -37764940 + Charlie1 DNA MER1_type 2649 2728 -33 876 90 0 0 chr1 244428728 244428839 -37764825 + AluY SINE Alu 1 111 -200 228 35 0 0 chr1 244433779 244433808 -37759856 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1272 176 79 56 chr1 244436758 244437027 -37756637 - MER7A DNA MER2_type -2692 346 68 1891 144 7 3 chr1 244437027 244437318 -37756346 - AluSx SINE Alu -20 292 1 1272 176 79 56 chr1 244437318 244437388 -37756276 - MER7A DNA MER2_type -2970 68 1 265 159 0 0 chr1 244438614 244438658 -37755006 + MIR SINE MIR 92 135 -127 1107 191 0 0 chr1 244439499 244439693 -37753971 - MER58A DNA MER1_type -24 200 7 2259 117 0 3 chr1 244439820 244440127 -37753537 + AluSx SINE Alu 1 306 -6 1369 122 15 0 chr1 244440137 244440363 -37753301 + AluSg/x SINE Alu 83 311 0 236 189 44 22 chr1 244440407 244440497 -37753167 + (TTATA)n Simple_repeat Simple_repeat 2 93 0 54 68 0 0 chr1 244440504 244440607 -37753057 + AT_rich Low_complexity Low_complexity 1 103 0 1313 171 40 73 chr1 244440608 244440882 -37752782 - AluJo SINE Alu -47 265 1 21 0 0 0 chr1 244442138 244442159 -37751505 + AT_rich Low_complexity Low_complexity 1 21 0 2016 157 21 18 chr1 244442918 244443306 -37750358 - MLT2C1 LTR ERVL -8 389 1 2117 98 34 0 chr1 244443319 244443615 -37750049 - AluSx SINE Alu -6 306 1 23 78 0 0 chr1 244443790 244443841 -37749823 + AT_rich Low_complexity Low_complexity 1 51 0 286 256 193 80 chr1 244444090 244444593 -37749071 + L1MC/D LINE L1 5260 5819 -1989 1509 128 5 5 chr1 244444913 244445132 -37748532 + AluJb SINE Alu 85 303 -9 2233 99 0 3 chr1 244445604 244445915 -37747749 + AluSg SINE Alu 1 310 0 2201 122 10 0 chr1 244446094 244446397 -37747267 + AluSx SINE Alu 1 306 -6 423 306 81 17 chr1 244446816 244446989 -37746675 - MIR3 SINE MIR -3 205 22 188 271 83 42 chr1 244447195 244447291 -37746373 + MIR SINE MIR 157 256 -6 353 332 153 42 chr1 244447584 244447918 -37745746 - L2 LINE L2 -5 3267 2897 1390 184 25 8 chr1 244448171 244448443 -37745221 - AluJb SINE Alu 0 310 35 643 250 156 19 chr1 244448482 244448694 -37744970 + MIR SINE MIR 6 246 -16 453 226 119 13 chr1 244449013 244449172 -37744492 - L2 LINE L2 -3 3310 3135 264 328 192 11 chr1 244449391 244449568 -37744096 - L2 LINE L2 -473 2841 2633 453 226 57 57 chr1 244449577 244449701 -37743963 - L2 LINE L2 -1 3312 3189 250 316 61 36 chr1 244449707 244449903 -37743761 - L2 LINE L2 -654 2660 2460 479 231 60 8 chr1 244449971 244450105 -37743559 + MIR SINE MIR 67 207 -55 621 186 9 0 chr1 244450202 244450315 -37743349 - FLAM_A SINE Alu -11 131 18 878 223 3 85 chr1 244450858 244451017 -37742647 - L1MD3 LINE L1 -10 8032 7926 249 108 0 0 chr1 244451017 244451054 -37742610 + (TG)n Simple_repeat Simple_repeat 1 37 0 878 223 3 85 chr1 244451054 244451232 -37742432 - L1MD3 LINE L1 -116 7926 7735 288 0 0 0 chr1 244451578 244451610 -37742054 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 211 14 28 chr1 244451615 244451686 -37741978 + (TA)n Simple_repeat Simple_repeat 2 71 0 1680 92 36 0 chr1 244451689 244451940 -37741724 - Tigger5 DNA MER2_type 0 2323 2064 23 0 0 0 chr1 244454110 244454133 -37739531 + AT_rich Low_complexity Low_complexity 1 23 0 347 179 0 13 chr1 244454606 244454684 -37738980 - MER116 DNA Mariner 0 80 4 204 182 0 0 chr1 244454686 244454730 -37738934 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 2223 111 10 0 chr1 244454940 244455229 -37738435 - AluSq SINE Alu -21 292 1 215 304 13 25 chr1 244456551 244456630 -37737034 - L2 LINE L2 -1015 2299 2222 185 280 40 0 chr1 244456673 244456748 -37736916 - L2 LINE L2 -1208 2106 2029 496 335 127 39 chr1 244456845 244457437 -37736227 + L2 LINE L2 2221 2864 -450 1863 151 7 10 chr1 244457507 244457798 -37735866 - AluJb SINE Alu -22 290 1 3185 156 59 62 chr1 244457933 244458625 -37735039 - LTR8 LTR ERV1 -1 690 1 289 285 73 29 chr1 244459303 244459440 -37734224 - L2 LINE L2 -145 3168 3026 2451 73 3 0 chr1 244459627 244459927 -37733737 + AluSg SINE Alu 1 301 -9 472 231 170 14 chr1 244459963 244460175 -37733489 + LTR67 LTR ERVL 296 540 -17 354 276 160 33 chr1 244460191 244460537 -37733127 - L2 LINE L2 -292 3021 2627 210 321 95 0 chr1 244460651 244460735 -37732929 - MIR SINE MIR -61 201 110 1073 219 18 0 chr1 244460745 244460964 -37732700 - MIR SINE MIR -38 224 2 888 257 107 11 chr1 244461400 244461849 -37731815 + L1ME3A LINE L1 5475 5959 -211 318 247 135 24 chr1 244462111 244462281 -37731383 + L1ME1 LINE L1 3038 3226 -2920 2314 67 0 20 chr1 244462383 244462680 -37730984 - AluY SINE Alu -20 291 1 302 272 52 7 chr1 244462907 244463043 -37730621 + L1M4 LINE L1 3654 3795 -2351 186 43 0 0 chr1 244463855 244463878 -37729786 + (TCCCC)n Simple_repeat Simple_repeat 2 24 0 503 280 161 6 chr1 244464613 244464781 -37728883 - MIR SINE MIR -20 242 49 199 343 27 0 chr1 244465300 244465373 -37728291 + MIR3 SINE MIR 86 160 -48 2026 96 92 0 chr1 244465466 244465748 -37727916 - AluJo SINE Alu 0 312 5 1774 152 101 8 chr1 244465839 244465875 -37727789 + L1PB4 LINE L1 5748 5779 -377 258 32 0 0 chr1 244465875 244465906 -37727758 + (TG)n Simple_repeat Simple_repeat 1 31 0 1774 152 101 8 chr1 244465906 244466237 -37727427 + L1PB4 LINE L1 5779 6149 -7 1527 189 51 0 chr1 244466241 244466516 -37727148 - AluSx SINE Alu -23 289 1 22 0 0 0 chr1 244466516 244466538 -37727126 + AT_rich Low_complexity Low_complexity 1 22 0 417 89 0 0 chr1 244467020 244467076 -37726588 + U6 snRNA snRNA 1 56 -51 396 331 73 0 chr1 244467130 244467308 -37726356 + L1ME1 LINE L1 3309 3499 -2647 2783 225 117 59 chr1 244467395 244468737 -37724927 + L1ME1 LINE L1 3510 4772 -1394 2541 68 0 0 chr1 244468737 244469046 -37724618 - AluY SINE Alu -2 309 1 2783 225 117 59 chr1 244469046 244470191 -37723473 + L1ME1 LINE L1 4772 6148 -18 450 281 29 58 chr1 244470382 244470660 -37723004 - HAL1 LINE L1 -7 2500 2231 751 275 0 0 chr1 244470990 244471172 -37722492 + FRAM SINE Alu 1 176 0 23 78 0 0 chr1 244471549 244471600 -37722064 + AT_rich Low_complexity Low_complexity 1 51 0 393 233 55 48 chr1 244471632 244471778 -37721886 - HAL1 LINE L1 -113 2394 2248 212 300 75 12 chr1 244471780 244471860 -37721804 + L2 LINE L2 2159 2243 -1071 2149 111 0 14 chr1 244471985 244472282 -37721382 + AluSx SINE Alu 1 293 -19 492 323 97 5 chr1 244472323 244472518 -37721146 + L2 LINE L2 2375 2587 -727 986 157 84 0 chr1 244472536 244472727 -37720937 + MER20 DNA MER1_type 3 209 -10 249 180 0 40 chr1 244473248 244473298 -37720366 - L2 LINE L2 -1 3312 3265 232 276 75 52 chr1 244473644 244473778 -37719886 - LTR67 LTR ERVL -417 140 4 667 266 14 5 chr1 244474550 244474757 -37718907 - HAL1 LINE L1 -698 1809 1601 894 256 149 56 chr1 244474784 244474925 -37718739 - HAL1 LINE L1 -113 2394 2268 2436 66 23 0 chr1 244474925 244475229 -37718435 - AluY SINE Alu 0 311 1 894 256 149 56 chr1 244475229 244475424 -37718240 - HAL1 LINE L1 -239 2268 2093 226 0 59 0 chr1 244475424 244475458 -37718206 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2081 134 0 3 chr1 244475460 244475751 -37717913 - AluSg SINE Alu -20 290 1 894 256 149 56 chr1 244475751 244476067 -37717597 - HAL1 LINE L1 -414 2093 1677 345 271 100 33 chr1 244476292 244476502 -37717162 + L1ME LINE L1 556 779 -5291 360 251 139 24 chr1 244476519 244476858 -37716806 + L1ME LINE L1 878 1255 -5006 2196 131 6 6 chr1 244476971 244477283 -37716381 - AluSx SINE Alu 0 312 1 22 35 0 0 chr1 244477298 244477327 -37716337 + AT_rich Low_complexity Low_complexity 1 29 0 1885 180 0 0 chr1 244477491 244477797 -37715867 - AluJb SINE Alu -5 307 2 29 0 0 0 chr1 244478435 244478464 -37715200 + AT_rich Low_complexity Low_complexity 1 29 0 481 250 38 12 chr1 244478834 244478994 -37714670 - L1ME3A LINE L1 -280 5890 5727 3192 108 45 46 chr1 244479017 244479191 -37714473 - L1MA3 LINE L1 -8 6297 6124 2189 135 0 0 chr1 244479191 244479503 -37714161 - AluSx SINE Alu 0 312 1 3192 108 45 46 chr1 244479503 244479911 -37713753 - L1MA3 LINE L1 -181 6124 5716 4735 34 7 2 chr1 244479912 244480505 -37713159 + MER11C LTR ERVK 476 1071 0 3974 150 38 72 chr1 244480505 244481386 -37712278 + HERVK11 LTR ERVK 1 851 -7102 2921 78 31 3 chr1 244481386 244482018 -37711646 + HERVK11 LTR ERVK 1165 2748 -5205 4629 140 25 7 chr1 244482018 244483482 -37710182 - L1MA3 LINE L1 -373 5932 4438 41195 49 3 2 chr1 244483484 244489607 -37704057 - L1PA5 LINE L1 -6 6148 22 5096 226 85 44 chr1 244489611 244490228 -37703436 + L1MB7 LINE L1 3197 3788 -2396 2085 148 0 7 chr1 244490228 244490531 -37703133 + AluSx SINE Alu 3 303 -9 5096 226 85 44 chr1 244490531 244491018 -37702646 + L1MB7 LINE L1 3788 4254 -1930 2000 159 7 0 chr1 244491018 244491320 -37702344 + AluSx SINE Alu 1 304 -8 5096 226 85 44 chr1 244491320 244492932 -37700732 + L1MB7 LINE L1 4254 6039 -145 1894 169 13 0 chr1 244492932 244493240 -37700424 - AluJb SINE Alu 0 312 1 5096 226 85 44 chr1 244493240 244493376 -37700288 + L1MB7 LINE L1 6039 6168 -16 1099 255 61 45 chr1 244493408 244493832 -37699832 + L1MC4a LINE L1 6345 6775 -1033 796 209 6 17 chr1 244493836 244494008 -37699656 + L1MC4 LINE L1 7307 7476 -566 1277 190 48 45 chr1 244494016 244494286 -37699378 - MLT1A1 LTR MaLR -11 354 81 2020 93 68 0 chr1 244494286 244494565 -37699099 + AluSx SINE Alu 1 298 -14 1277 190 48 45 chr1 244494565 244494647 -37699017 - MLT1A1 LTR MaLR -284 81 1 1329 203 59 37 chr1 244494648 244495046 -37698618 + L1MC4 LINE L1 7474 7967 -28 4017 170 34 47 chr1 244495046 244495915 -37697749 + L1MA4 LINE L1 4042 4899 -1247 1697 191 7 3 chr1 244495915 244496208 -37697456 + AluJo SINE Alu 1 294 -18 4017 170 34 47 chr1 244496208 244496299 -37697365 + L1MA4 LINE L1 4899 4990 -1156 1768 116 127 0 chr1 244496300 244496567 -37697097 + AluSq SINE Alu 1 301 -12 4854 133 27 15 chr1 244496567 244497478 -37696186 + L1MA4 LINE L1 5258 6179 -121 395 293 100 77 chr1 244497521 244497962 -37695702 - L1M2 LINE L1 -5715 1134 664 2098 124 3 3 chr1 244498154 244498453 -37695211 - AluSx SINE Alu -13 299 1 1674 168 7 30 chr1 244498453 244498757 -37694907 - AluJo SINE Alu -15 297 1 196 321 19 0 chr1 244498917 244498970 -37694694 - MIR SINE MIR -62 146 93 1305 175 109 31 chr1 244499251 244499324 -37694340 - MER69B DNA AcHobo -1311 1215 1149 2315 53 13 17 chr1 244499324 244499624 -37694040 - AluY SINE Alu -12 299 1 1305 175 109 31 chr1 244499624 244499973 -37693691 - MER69B DNA AcHobo -1377 1149 760 238 175 0 0 chr1 244499972 244500012 -37693652 - MER69B DNA AcHobo -605 621 582 * 2168 117 27 0 chr1 244500070 244500368 -37693296 - AluSx SINE Alu -6 306 1 23 78 0 0 chr1 244500543 244500594 -37693070 + AT_rich Low_complexity Low_complexity 1 51 0 328 139 46 0 chr1 244500662 244500728 -37692936 + L1MD3 LINE L1 7716 7995 0 2005 113 11 7 chr1 244500782 244501064 -37692600 + AluSx SINE Alu 6 288 -24 2028 123 20 7 chr1 244501069 244501361 -37692303 + AluSg SINE Alu 1 296 -14 1010 143 0 95 chr1 244501362 244501433 -37692231 + Tigger4(Zombi) DNA MER2_type 2542 2618 -113 1698 175 3 14 chr1 244501433 244501730 -37691934 - AluJo SINE Alu -18 294 1 1010 143 0 95 chr1 244501730 244501868 -37691796 + Tigger4(Zombi) DNA MER2_type 2618 2731 0 230 125 125 0 chr1 244501917 244501957 -37691707 + MER77 LTR ERV1 154 198 -407 1326 267 87 40 chr1 244501960 244502517 -37691147 + L1MC1 LINE L1 5285 5398 -748 1404 225 38 58 chr1 244502671 244502833 -37690831 + MLT1A2 LTR MaLR 1 165 -209 2164 132 0 0 chr1 244502833 244503129 -37690535 + AluSx SINE Alu 1 296 -16 1404 225 38 58 chr1 244503129 244503331 -37690333 + MLT1A2 LTR MaLR 165 358 -16 1961 134 41 3 chr1 244503622 244503914 -37689750 - AluJb SINE Alu -9 303 1 1413 199 72 4 chr1 244504265 244504541 -37689123 + AluJo SINE Alu 1 295 -17 2220 122 0 0 chr1 244504541 244504836 -37688828 - AluSx SINE Alu -17 295 1 21 36 0 0 chr1 244504836 244504864 -37688800 + AT_rich Low_complexity Low_complexity 1 28 0 1200 103 0 0 chr1 244505024 244505180 -37688484 + AluSq SINE Alu 143 298 -15 417 339 5 41 chr1 244505326 244505521 -37688143 - L2 LINE L2 -168 3104 2917 21 0 0 0 chr1 244506054 244506075 -37687589 + GC_rich Low_complexity Low_complexity 1 21 0 495 187 23 0 chr1 244507142 244507286 -37686378 + L1MA4 LINE L1 6108 6257 -43 293 127 0 0 chr1 244507332 244507387 -37686277 + L1MA4 LINE L1 6241 6295 -5 1844 174 11 39 chr1 244507513 244507584 -37686080 + L1MC1 LINE L1 5988 6059 -274 3290 95 29 26 chr1 244507584 244508036 -37685628 + MLT2A2 LTR ERVL 1 453 0 1844 174 11 39 chr1 244508036 244508320 -37685344 + L1MC1 LINE L1 6059 6333 0 225 262 100 38 chr1 244508408 244508698 -37684966 + L1ME LINE L1 4371 4678 -1468 355 298 36 16 chr1 244508861 244509051 -37684613 + L1P LINE L1 4877 5064 -1082 509 291 17 17 chr1 244509158 244509330 -37684334 + L1ME LINE L1 5614 5785 -377 248 216 0 147 chr1 244509360 244509462 -37684202 + MER77 LTR ERV1 57 143 -462 * 16129 133 37 28 chr1 244509453 244511314 -37682350 + Tigger4(Zombi) DNA MER2_type 5 1847 -884 2584 120 36 57 chr1 244511314 244511388 -37682276 - MSTB1 LTR MaLR 0 432 358 1962 151 3 3 chr1 244511388 244511686 -37681978 + AluJo SINE Alu 1 298 -14 2584 120 36 57 chr1 244511686 244512052 -37681612 - MSTB1 LTR MaLR -74 358 1 16129 133 37 28 chr1 244512052 244512674 -37680990 + Tigger4(Zombi) DNA MER2_type 1847 2462 -269 2104 132 0 0 chr1 244512674 244512962 -37680702 + AluSx SINE Alu 1 288 -24 2057 124 21 3 chr1 244512967 244513258 -37680406 + AluSg SINE Alu 1 296 -14 16129 133 37 28 chr1 244513258 244513330 -37680334 + Tigger4(Zombi) DNA MER2_type 2465 2535 -196 1682 179 3 14 chr1 244513330 244513627 -37680037 - AluJo SINE Alu -18 294 1 16129 133 37 28 chr1 244513627 244513765 -37679899 + Tigger4(Zombi) DNA MER2_type 2535 2731 0 230 125 125 0 chr1 244513814 244513854 -37679810 + MER77 LTR ERV1 154 198 -407 1347 265 87 40 chr1 244513857 244514414 -37679250 + L1MC4a LINE L1 5285 5398 -748 1401 220 41 58 chr1 244514568 244514729 -37678935 + MLT1A2 LTR MaLR 1 163 -211 2164 132 0 0 chr1 244514729 244515025 -37678639 + AluSx SINE Alu 1 296 -16 1401 220 41 58 chr1 244515025 244515227 -37678437 + MLT1A2 LTR MaLR 163 358 -16 1986 130 41 3 chr1 244515518 244515810 -37677854 - AluJb SINE Alu -9 303 1 1413 199 72 4 chr1 244516161 244516437 -37677227 + AluJo SINE Alu 1 295 -17 2220 122 0 0 chr1 244516437 244516732 -37676932 - AluSx SINE Alu -17 295 1 21 36 0 0 chr1 244516732 244516760 -37676904 + AT_rich Low_complexity Low_complexity 1 28 0 1200 103 0 0 chr1 244516920 244517076 -37676588 + AluSq SINE Alu 143 298 -15 439 360 68 26 chr1 244517222 244517603 -37676061 - L2 LINE L2 -168 3104 2689 1388 204 17 4 chr1 244518285 244518520 -37675144 - MER8 DNA MER2_type -1 238 1 2122 129 3 16 chr1 244518882 244519193 -37674471 + AluSx SINE Alu 1 307 -5 324 0 0 0 chr1 244519248 244519284 -37674380 + (TAA)n Simple_repeat Simple_repeat 1 36 0 234 196 0 20 chr1 244519517 244519568 -37674096 + MLT1J LTR MaLR 111 160 -351 2064 120 0 3 chr1 244519610 244519894 -37673770 - AluSg SINE Alu -19 291 9 766 204 39 48 chr1 244519940 244520171 -37673493 - LTR37B LTR ERV1 -41 427 199 513 299 30 6 chr1 244520238 244520405 -37673259 - LTR37B LTR ERV1 -297 171 1 1966 142 3 3 chr1 244521934 244522244 -37671420 - AluSx SINE Alu -2 310 1 2288 121 0 0 chr1 244522253 244522560 -37671104 - AluSq SINE Alu -6 307 1 456 145 0 0 chr1 244522753 244522829 -37670835 + L1PA16 LINE L1 6091 6166 0 1633 176 41 3 chr1 244522877 244522994 -37670670 + AluSx SINE Alu 1 112 -200 390 21 0 0 chr1 244522994 244523041 -37670623 + (CA)n Simple_repeat Simple_repeat 2 48 0 1633 176 41 3 chr1 244523041 244523213 -37670451 + AluSx SINE Alu 112 301 -11 186 143 0 0 chr1 244523397 244523432 -37670232 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1486 201 7 7 chr1 244523432 244523705 -37669959 - AluJo SINE Alu -34 278 6 1797 149 0 27 chr1 244523822 244524117 -37669547 + AluJo SINE Alu 1 287 -25 540 116 179 0 chr1 244524995 244525090 -37668574 + MER69B DNA AcHobo 13 124 -1102 * 748 196 11 62 chr1 244525084 244525203 -37668461 + MER69B DNA AcHobo 422 531 -1995 2273 125 0 0 chr1 244525203 244525514 -37668150 + AluSx SINE Alu 1 311 -1 748 196 11 62 chr1 244525514 244525573 -37668091 + MER69B DNA AcHobo 531 591 -1935 1531 170 109 31 chr1 244525611 244525960 -37667704 + MER69B DNA AcHobo 760 1149 -1377 2568 50 0 3 chr1 244525960 244526260 -37667404 + AluY SINE Alu 1 299 -12 1531 170 109 31 chr1 244526260 244526333 -37667331 + MER69B DNA AcHobo 1149 1215 -11 193 321 19 0 chr1 244526614 244526667 -37666997 + MIR SINE MIR 93 146 -62 1689 168 7 26 chr1 244526829 244527132 -37666532 + AluJo SINE Alu 1 297 -15 2137 123 0 3 chr1 244527132 244527432 -37666232 + AluSx SINE Alu 1 299 -13 897 95 0 0 chr1 244527478 244527594 -37666070 - AluSg/x SINE Alu -12 298 183 41 21 0 0 chr1 244528364 244528412 -37665252 + AT_rich Low_complexity Low_complexity 1 48 0 2097 88 13 46 chr1 244528735 244529040 -37664624 - AluSx SINE Alu -17 295 1 1759 201 60 25 chr1 244529299 244529652 -37664012 + MLT1A1 LTR MaLR 1 365 0 1607 138 40 69 chr1 244529865 244530169 -37663495 - AluSx SINE Alu -17 295 1 799 109 0 0 chr1 244530169 244530270 -37663394 - AluSq/x SINE Alu -178 135 35 3765 128 0 28 chr1 244530332 244530751 -37662913 + MER1A DNA MER1_type 3 405 -2295 1988 143 7 7 chr1 244530751 244531051 -37662613 + AluSx SINE Alu 1 300 -12 3765 128 0 28 chr1 244531051 244531171 -37662493 + MER1A DNA MER1_type 405 527 0 359 280 50 10 chr1 244531193 244531293 -37662371 - MER5A DNA MER1_type -77 112 9 287 295 2 13 chr1 244531354 244531458 -37662206 + MER5B DNA MER1_type 63 154 -24 654 191 86 117 chr1 244531462 244531613 -37662051 - MER112 DNA MER1_type -4 256 115 2247 112 3 0 chr1 244531613 244531908 -37661756 + AluSq SINE Alu 1 296 -17 654 191 86 117 chr1 244531908 244532013 -37661651 - MER112 DNA MER1_type -145 115 8 314 0 69 35 chr1 244532084 244532142 -37661522 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 2274 79 0 0 chr1 244532143 244532422 -37661242 - AluY SINE Alu -32 279 1 417 213 0 0 chr1 244532426 244532506 -37661158 - Charlie1 DNA MER1_type -33 2728 2649 405 133 67 0 chr1 244532506 244532566 -37661098 + AluJ/FRAM SINE Alu 226 289 -23 1582 189 50 14 chr1 244533522 244533819 -37659845 + AluJb SINE Alu 1 308 -4 1792 251 76 16 chr1 244533898 244534385 -37659279 + MLT1E LTR MaLR 78 593 0 1081 167 9 57 chr1 244534385 244534595 -37659069 - Charlie1 DNA MER1_type -314 2447 2249 5144 176 43 24 chr1 244534600 244536016 -37657648 + L1MB4 LINE L1 4172 5642 -538 2144 103 3 7 chr1 244536016 244536318 -37657346 + AluSx SINE Alu 1 301 0 5144 176 43 24 chr1 244536318 244536856 -37656808 + L1MB4 LINE L1 5642 6168 -12 3418 158 40 48 chr1 244536894 244537586 -37656078 - Charlie1 DNA MER1_type -498 2263 1577 21365 150 33 58 chr1 244537589 244539852 -37653812 + L1MA1 LINE L1 15 2335 -5230 2214 99 3 0 chr1 244539852 244540144 -37653520 + AluSq SINE Alu 1 293 -20 21365 150 33 58 chr1 244540144 244540926 -37652738 + L1MA1 LINE L1 2335 3136 -4429 2103 131 0 13 chr1 244540926 244541232 -37652432 + AluSx SINE Alu 1 302 -10 21365 150 33 58 chr1 244541232 244542680 -37650984 + L1MA1 LINE L1 3136 4620 -2945 1752 162 26 26 chr1 244542680 244542982 -37650682 - AluJb SINE Alu 0 312 11 21365 150 33 58 chr1 244542982 244543219 -37650445 + L1MA1 LINE L1 4620 4596 -2969 1928 83 0 12 chr1 244543219 244543460 -37650204 + AluSq SINE Alu 1 238 -75 21365 150 33 58 chr1 244543460 244543762 -37649902 + L1MA1 LINE L1 4595 4903 -2662 42830 55 7 1 chr1 244543770 244549881 -37643783 + L1PA5 LINE L1 11 6158 0 1665 182 13 0 chr1 244549885 244550193 -37643471 + L1MA1 LINE L1 4898 5209 -2356 6074 63 16 33 chr1 244550194 244552250 -37641414 + SVA Other Other 132 1397 0 8605 118 20 15 chr1 244552250 244553810 -37639854 + L1MA1 LINE L1 5194 6745 -976 2044 135 20 0 chr1 244553810 244554106 -37639558 + AluSx SINE Alu 1 302 -10 8605 118 20 15 chr1 244554106 244554187 -37639477 + L1MA1 LINE L1 6745 6824 -897 1741 160 36 33 chr1 244554187 244554494 -37639170 + AluJb SINE Alu 1 308 -4 8605 118 20 15 chr1 244554494 244555355 -37638309 + L1MA1 LINE L1 6824 7721 0 1038 199 32 56 chr1 244555413 244555664 -37638000 - Charlie1a DNA MER1_type -1199 256 12 971 196 17 15 chr1 244556075 244556309 -37637355 + L1MA9 LINE L1 4778 5015 -1131 521 141 40 0 chr1 244556304 244556403 -37637261 + L1MA9 LINE L1 5223 5325 -821 * 1305 137 0 0 chr1 244556407 244556582 -37637082 + AluJb SINE Alu 129 303 -9 4462 135 47 82 chr1 244556588 244557327 -37636337 + L1MA9 LINE L1 5329 6025 -287 2897 65 3 0 chr1 244557327 244557679 -37635985 + THE1A LTR MaLR 1 353 -2 4462 135 47 82 chr1 244557679 244557958 -37635706 + L1MA9 LINE L1 6025 6312 0 2188 100 3 23 chr1 244557993 244558293 -37635371 - AluSx SINE Alu -18 294 1 1163 176 5 37 chr1 244558362 244558578 -37635086 + AluJo SINE Alu 92 300 -12 2323 165 34 10 chr1 244558672 244559090 -37634574 + MSTB1 LTR MaLR 5 432 0 300 352 97 0 chr1 244559110 244559255 -37634409 + L1MC/D LINE L1 5312 5470 -2338 400 259 34 54 chr1 244559303 244559508 -37634156 + MLT1G1 LTR MaLR 98 298 -297 618 279 54 20 chr1 244560121 244560325 -37633339 + MIR SINE MIR 49 259 -3 183 281 149 26 chr1 244560334 244560448 -37633216 + MIR SINE MIR 65 192 -70 461 272 78 12 chr1 244560625 244560783 -37632881 - MIR SINE MIR -45 217 45 192 179 0 0 chr1 244561239 244561278 -37632386 + CT-rich Low_complexity Low_complexity 1 39 0 1926 119 3 101 chr1 244561436 244561763 -37631901 + AluSx SINE Alu 1 295 -17 811 161 161 0 chr1 244562019 244562168 -37631496 - MER5B DNA MER1_type -3 175 3 242 289 123 9 chr1 244562372 244562486 -37631178 - MIR SINE MIR -70 192 66 354 319 19 25 chr1 244563146 244563306 -37630358 + MLT1K LTR MaLR 90 248 -340 1161 211 146 19 chr1 244563344 244563714 -37629950 - MLT1J2 LTR MaLR -33 417 1 2528 54 0 7 chr1 244563853 244564151 -37629513 + AluY SINE Alu 1 296 -15 326 268 21 10 chr1 244564167 244564264 -37629400 + GA-rich Low_complexity Low_complexity 3 100 0 239 192 192 0 chr1 244564327 244564405 -37629259 - MER45A DNA AcHobo 0 178 86 254 307 149 18 chr1 244564703 244564817 -37628847 - L2 LINE L2 0 3313 3185 2075 116 3 33 chr1 244566108 244566411 -37627253 - AluSx SINE Alu -18 294 1 213 115 0 58 chr1 244566651 244566703 -37626961 + (TAAAA)n Simple_repeat Simple_repeat 1 49 0 325 301 47 23 chr1 244566718 244567087 -37626577 + L1MC4 LINE L1 7539 8042 0 2241 115 3 0 chr1 244567907 244568202 -37625462 + AluSg SINE Alu 1 296 -14 357 260 10 10 chr1 244569186 244569282 -37624382 + MIR3 SINE MIR 109 204 -4 281 179 385 8 chr1 244570232 244570349 -37623315 + MIR SINE MIR 47 207 -55 252 297 0 11 chr1 244570425 244570516 -37623148 + L2 LINE L2 2658 2747 -567 198 245 61 0 chr1 244571337 244571386 -37622278 + L2 LINE L2 2104 2155 -1159 291 28 0 0 chr1 244571386 244571422 -37622242 + (CA)n Simple_repeat Simple_repeat 2 37 0 188 383 25 8 chr1 244571492 244571612 -37622052 - L2 LINE L2 -263 3050 2929 265 260 114 32 chr1 244572238 244572361 -37621303 + MIR SINE MIR 20 152 -56 2184 120 3 0 chr1 244572675 244572966 -37620698 + AluSp SINE Alu 1 292 -21 225 94 0 0 chr1 244573413 244573445 -37620219 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 2168 119 24 0 chr1 244573914 244574208 -37619456 + AluSx SINE Alu 1 301 -11 287 300 135 72 chr1 244574671 244575018 -37618646 + L2 LINE L2 2904 3272 0 1156 297 86 0 chr1 244575325 244575837 -37617827 - MER115 DNA AcHobo -91 602 47 220 259 17 0 chr1 244576189 244576247 -37617417 + GA-rich Low_complexity Low_complexity 4 62 0 1943 107 59 38 chr1 244576609 244576899 -37616765 + AluJb SINE Alu 1 296 -16 2148 104 24 0 chr1 244576957 244577246 -37616418 + AluSq SINE Alu 1 296 -17 2288 109 20 0 chr1 244577301 244577603 -37616061 + AluSq SINE Alu 1 308 -5 342 169 96 96 chr1 244577645 244577736 -37615928 + L1MC4 LINE L1 7836 7929 -113 1644 181 301 8 chr1 244577736 244578217 -37615447 + LTR29 LTR ERV1 1 622 0 342 169 96 96 chr1 244578217 244578261 -37615403 + L1MC4 LINE L1 7928 7971 -71 180 346 10 67 chr1 244578802 244578906 -37614758 + MIR SINE MIR 117 214 -48 2294 104 7 0 chr1 244578987 244579284 -37614380 + AluSx SINE Alu 1 299 -13 201 143 0 29 chr1 244579579 244579614 -37614050 + (CCCCCA)n Simple_repeat Simple_repeat 6 39 0 379 283 33 69 chr1 244579687 244579896 -37613768 + MIR SINE MIR 3 206 -56 1883 204 47 26 chr1 244579966 244580460 -37613204 + Charlie4a DNA MER1_type 5 508 0 233 250 0 0 chr1 244582022 244582074 -37611590 + L2 LINE L2 3238 3289 -24 459 78 0 0 chr1 244582775 244582839 -37610825 + (TG)n Simple_repeat Simple_repeat 2 65 0 285 29 0 0 chr1 244585201 244585235 -37608429 + (TG)n Simple_repeat Simple_repeat 1 34 0 2040 150 37 3 chr1 244585476 244585829 -37607835 + MLT1A1 LTR MaLR 1 365 0 184 255 21 0 chr1 244585926 244585973 -37607691 - L2 LINE L2 0 3313 3266 2373 98 13 0 chr1 244586016 244586321 -37607343 - AluSp SINE Alu -4 309 1 240 232 121 20 chr1 244586462 244586561 -37607103 + MLT1J1 LTR MaLR 58 166 -280 439 317 71 6 chr1 244586621 244586804 -37606860 + MLT1J2 LTR MaLR 245 439 -11 2533 93 0 0 chr1 244587093 244587403 -37606261 - AluSq SINE Alu -3 310 1 403 214 34 0 chr1 244587431 244587520 -37606144 - MER82 DNA MER2_type 0 653 562 1994 122 0 36 chr1 244587520 244587686 -37605978 - AluSg SINE Alu -17 293 141 2493 76 0 10 chr1 244587686 244587990 -37605674 - AluYa5 SINE Alu -8 303 3 1994 122 0 36 chr1 244587990 244588127 -37605537 - AluSg SINE Alu -169 141 1 985 110 7 7 chr1 244588127 244588263 -37605401 - AluSq/x SINE Alu -176 136 1 352 92 231 0 chr1 244588274 244588339 -37605325 - MADE1 DNA Mariner 0 80 1 * 2322 190 69 43 chr1 244588339 244588889 -37604775 - MER82 DNA MER2_type -89 564 1 230 382 64 9 chr1 244590148 244590258 -37603406 + L3 LINE CR1 238 353 -1224 392 232 77 52 chr1 244590655 244590810 -37602854 + LTR16C LTR ERVL 319 477 -14 1923 129 13 36 chr1 244590838 244591147 -37602517 + AluSx SINE Alu 1 302 -10 260 357 35 7 chr1 244591977 244592120 -37601544 - L2 LINE L2 0 3272 3126 250 330 91 34 chr1 244592233 244592409 -37601255 - MIR3 SINE MIR -7 201 16 261 0 0 0 chr1 244592548 244592577 -37601087 + (TG)n Simple_repeat Simple_repeat 2 30 0 1635 143 152 76 chr1 244593036 244593456 -37600208 - LTR47A LTR ERVL 0 452 1 21 0 0 0 chr1 244593785 244593806 -37599858 + AT_rich Low_complexity Low_complexity 1 21 0 488 311 68 24 chr1 244594573 244594810 -37598854 + MIR SINE MIR 3 247 -15 2144 149 0 0 chr1 244595194 244595502 -37598162 - AluSx SINE Alu -4 308 1 2581 60 0 0 chr1 244595615 244595916 -37597748 - AluY SINE Alu -10 301 1 348 319 33 0 chr1 244596282 244596373 -37597291 - MIR SINE MIR -60 202 109 317 176 0 0 chr1 244597325 244597376 -37596288 + MER66B LTR ERV1 295 345 -141 2117 124 0 21 chr1 244597463 244597599 -37596065 + AluSx SINE Alu 1 138 -181 2646 55 0 3 chr1 244597599 244597911 -37595753 + AluY SINE Alu 1 311 0 2117 124 0 21 chr1 244597911 244598099 -37595565 + AluSx SINE Alu 138 319 0 536 250 32 13 chr1 244598107 244598263 -37595401 + L1MC5 LINE L1 6689 6847 -1114 * 611 264 0 34 chr1 244598257 244598435 -37595229 + L1MC4 LINE L1 7729 7900 -142 2156 200 22 60 chr1 244598464 244598932 -37594732 + MLT1E LTR MaLR 79 526 -67 2281 110 3 3 chr1 244598932 244599233 -37594431 - AluSq SINE Alu -12 301 1 2156 200 22 60 chr1 244599233 244599299 -37594365 + MLT1E LTR MaLR 526 593 0 2377 79 7 3 chr1 244599948 244600238 -37593426 + AluSc SINE Alu 1 291 -18 650 268 91 78 chr1 244600260 244600475 -37593189 + L2 LINE L2 2924 3148 -165 2207 132 3 0 chr1 244600475 244600785 -37592879 - AluSx SINE Alu -1 311 1 650 268 91 78 chr1 244600785 244600954 -37592710 + L2 LINE L2 3148 3313 0 540 321 77 9 chr1 244601063 244601284 -37592380 + MIR SINE MIR 16 251 -11 2159 126 3 0 chr1 244601288 244601581 -37592083 - AluSq SINE Alu -19 294 1 227 328 29 6 chr1 244601581 244601755 -37591909 - L1M4 LINE L1 -2799 3347 3170 346 200 32 11 chr1 244601766 244601861 -37591803 - L1ME2 LINE L1 -1 6163 6067 1021 112 0 0 chr1 244601863 244601997 -37591667 - AluSq/x SINE Alu -179 134 1 751 242 32 47 chr1 244602026 244602281 -37591383 - L1MD3 LINE L1 -1 8039 7801 1896 162 16 7 chr1 244602375 244602684 -37590980 - AluJb SINE Alu 0 312 1 869 125 0 22 chr1 244603140 244603276 -37590388 + FLAM_C SINE Alu 1 133 0 247 286 80 45 chr1 244603299 244603411 -37590253 - MIR SINE MIR -126 136 21 347 268 0 45 chr1 244603914 244604026 -37589638 - MIR SINE MIR -147 115 9 662 331 54 16 chr1 244604055 244604297 -37589367 + MIR SINE MIR 2 252 -10 379 204 99 56 chr1 244604490 244604632 -37589032 - MIR SINE MIR -25 237 90 645 153 29 12 chr1 244604739 244604873 -37588791 - MER5A DNA MER1_type 0 189 38 635 211 61 7 chr1 244605157 244605304 -37588360 - FRAM SINE Alu -11 155 1 296 204 144 61 chr1 244605673 244605805 -37587859 + MIR SINE MIR 3 145 -63 2327 79 3 0 chr1 244606921 244607212 -37586452 - AluSp SINE Alu -21 292 1 304 274 136 16 chr1 244607561 244607730 -37585934 + MIR SINE MIR 23 203 -59 811 104 0 9 chr1 244608383 244608489 -37585175 - AluJb SINE Alu -207 105 1 406 250 250 19 chr1 244609312 244609740 -37583924 + MLT1K LTR MaLR 7 569 -19 308 304 33 11 chr1 244609881 244609973 -37583691 + L1MC4 LINE L1 6608 6701 -1341 180 176 0 0 chr1 244610040 244610074 -37583590 + GA-rich Low_complexity Low_complexity 2 35 0 745 296 57 81 chr1 244610412 244610883 -37582781 - L2 LINE L2 0 3272 2791 2344 95 0 29 chr1 244610883 244611198 -37582466 + AluSx SINE Alu 1 306 -6 745 296 57 81 chr1 244611198 244611709 -37581955 - L2 LINE L2 -481 2791 2264 393 241 177 0 chr1 244611743 244611887 -37581777 + MIR3 SINE MIR 37 205 -3 180 336 55 27 chr1 244612489 244612599 -37581065 - L2 LINE L2 -12 3301 3189 2581 59 0 3 chr1 244612696 244613002 -37580662 + AluY SINE Alu 1 305 -6 574 283 117 13 chr1 244613013 244613243 -37580421 - MIR SINE MIR -3 259 6 225 239 261 11 chr1 244613324 244613412 -37580252 + L2 LINE L2 3159 3268 -4 699 110 0 0 chr1 244613812 244613912 -37579752 + AluSx SINE Alu 11 110 -202 1368 132 0 0 chr1 244613967 244614157 -37579507 + AluSx SINE Alu 108 297 -15 218 389 9 0 chr1 244614316 244614424 -37579240 + L2 LINE L2 2910 3018 -254 195 283 0 0 chr1 244614600 244614653 -37579011 + L2 LINE L2 3243 3295 -18 546 294 103 14 chr1 244614702 244614916 -37578748 - MIR SINE MIR -10 252 20 291 323 21 0 chr1 244614986 244615082 -37578582 + MIR3 SINE MIR 77 174 -34 1592 149 16 87 chr1 244615819 244616028 -37577636 + AluJo SINE Alu 3 183 -129 3657 145 29 5 chr1 244616028 244616535 -37577129 + MER41B LTR ERV1 2 528 -107 2319 131 0 0 chr1 244616535 244616847 -37576817 - AluSx SINE Alu 0 312 1 3657 145 29 5 chr1 244616847 244616958 -37576706 + MER41B LTR ERV1 528 635 0 1592 149 16 87 chr1 244616958 244617069 -37576595 + AluJo SINE Alu 183 300 -12 183 232 71 0 chr1 244618028 244618084 -37575580 + MIR3 SINE MIR 103 162 -46 204 331 108 27 chr1 244618141 244618289 -37575375 - L2 LINE L2 -26 3287 3128 250 279 53 18 chr1 244618351 244618547 -37575117 + MIR3 SINE MIR 14 262 0 397 264 136 70 chr1 244618562 244618907 -37574757 - L2 LINE L2 -1 3312 2945 247 215 398 0 chr1 244618937 244619030 -37574634 + MIR SINE MIR 126 255 -7 187 324 15 15 chr1 244619388 244619456 -37574208 - MIR SINE MIR -174 88 21 334 148 0 119 chr1 244619461 244619555 -37574109 + MER53 DNA DNA 1 82 -107 1248 195 152 13 chr1 244619555 244619858 -37573806 + MER2 DNA MER2_type 1 345 0 450 123 18 114 chr1 244619858 244619906 -37573758 + MER53 DNA DNA 87 138 -51 2130 132 7 3 chr1 244619906 244620201 -37573463 + AluSx SINE Alu 1 296 -16 2523 53 0 13 chr1 244620201 244620504 -37573160 + AluY SINE Alu 1 299 -12 2403 94 3 0 chr1 244620504 244620803 -37572861 + AluSq SINE Alu 1 300 -13 450 123 18 114 chr1 244620803 244620866 -37572798 + MER53 DNA DNA 135 189 0 1991 174 0 0 chr1 244620944 244621254 -37572410 + AluJb SINE Alu 2 311 -1 606 278 72 0 chr1 244621350 244621559 -37572105 + MER115 DNA AcHobo 19 242 -451 452 146 45 0 chr1 244621600 244621689 -37571975 - MER53 DNA DNA 0 189 97 407 196 98 56 chr1 244621699 244621842 -37571822 + MER115 DNA AcHobo 293 441 -252 531 82 0 0 chr1 244622124 244622197 -37571467 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 1957 162 3 7 chr1 244622197 244622500 -37571164 - AluJo SINE Alu -2 310 9 334 161 48 0 chr1 244622795 244622857 -37570807 + MIR SINE MIR 196 260 -2 2377 88 0 7 chr1 244622895 244623189 -37570475 - AluSc SINE Alu -17 292 1 2395 117 36 85 chr1 244623189 244623695 -37569969 + MER41A-int LTR ERV1 2297 2777 -2238 767 52 0 0 chr1 244623726 244623822 -37569842 + MER41A-int LTR ERV1 5845 5940 -6 3995 101 0 5 chr1 244623826 244624383 -37569281 + MER41A LTR ERV1 1 554 0 1149 171 113 40 chr1 244624383 244624657 -37569007 - MSTD LTR MaLR -102 294 1 1732 177 17 23 chr1 244626090 244626189 -37567475 - AluJb SINE Alu -9 303 205 1061 206 117 65 chr1 244626189 244626617 -37567047 - LTR7 LTR ERV1 0 450 1 1732 177 17 23 chr1 244626617 244626817 -37566847 - AluJb SINE Alu -107 205 6 444 319 106 0 chr1 244627059 244627247 -37566417 + MIR SINE MIR 53 260 -2 488 311 19 121 chr1 244627572 244628003 -37565661 + L2 LINE L2 2873 3259 -13 222 37 0 0 chr1 244628005 244628032 -37565632 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 259 286 32 0 chr1 244628654 244628717 -37564947 + L2 LINE L2 3248 3312 -1 183 232 71 0 chr1 244628719 244628775 -37564889 + MIR3 SINE MIR 103 162 -46 204 331 108 27 chr1 244628832 244628980 -37564684 - L2 LINE L2 -26 3287 3128 250 279 53 18 chr1 244629042 244629238 -37564426 + MIR3 SINE MIR 14 262 0 397 264 136 70 chr1 244629253 244629598 -37564066 - L2 LINE L2 -1 3312 2945 247 215 398 0 chr1 244629628 244629721 -37563943 + MIR SINE MIR 126 255 -7 187 324 15 15 chr1 244630079 244630147 -37563517 - MIR SINE MIR -174 88 21 334 148 0 119 chr1 244630152 244630246 -37563418 + MER53 DNA DNA 1 82 -107 1248 195 152 13 chr1 244630246 244630549 -37563115 + MER2 DNA MER2_type 1 345 0 450 123 18 114 chr1 244630549 244630597 -37563067 + MER53 DNA DNA 87 138 -51 2130 132 7 3 chr1 244630597 244630892 -37562772 + AluSx SINE Alu 1 296 -16 2523 53 0 13 chr1 244630892 244631195 -37562469 + AluY SINE Alu 1 299 -12 2403 94 3 0 chr1 244631195 244631494 -37562170 + AluSq SINE Alu 1 300 -13 450 123 18 114 chr1 244631494 244631557 -37562107 + MER53 DNA DNA 135 189 0 1991 174 0 0 chr1 244631635 244631945 -37561719 + AluJb SINE Alu 2 311 -1 606 278 72 0 chr1 244632041 244632250 -37561414 + MER115 DNA AcHobo 19 242 -451 452 146 45 0 chr1 244632291 244632380 -37561284 - MER53 DNA DNA 0 189 97 407 196 98 56 chr1 244632390 244632533 -37561131 + MER115 DNA AcHobo 293 441 -252 531 82 0 0 chr1 244632815 244632888 -37560776 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 1957 162 3 7 chr1 244632888 244633191 -37560473 - AluJo SINE Alu -2 310 9 334 161 48 0 chr1 244633486 244633548 -37560116 + MIR SINE MIR 196 260 -2 2350 94 0 7 chr1 244633586 244633884 -37559780 - AluSq SINE Alu -17 296 1 323 293 155 0 chr1 244633898 244634014 -37559650 + L2 LINE L2 3134 3267 -5 739 157 0 22 chr1 244634031 244634165 -37559499 + AluJo SINE Alu 6 136 -176 2033 129 20 3 chr1 244634704 244634999 -37558665 - AluSq SINE Alu -13 300 1 207 254 0 0 chr1 244635085 244635144 -37558520 + (CA)n Simple_repeat Simple_repeat 1 59 0 2103 115 14 3 chr1 244635551 244635838 -37557826 + AluSx SINE Alu 21 310 -2 203 262 41 66 chr1 244636797 244636919 -37556745 - L2 LINE L2 -94 3178 3060 2148 132 0 3 chr1 244637523 244637818 -37555846 - AluSx SINE Alu -16 296 3 650 276 214 3 chr1 244637889 244638197 -37555467 + L2 LINE L2 1961 2333 -981 2529 90 3 0 chr1 244638264 244638574 -37555090 - AluSp SINE Alu -2 311 1 2166 106 25 41 chr1 244638577 244638944 -37554720 - THE1B LTR MaLR -3 361 1 643 204 216 72 chr1 244639106 244639551 -37554113 + L2 LINE L2 2804 3312 -1 232 132 38 0 chr1 244639728 244639781 -37553883 + A-rich Low_complexity Low_complexity 2 56 0 189 0 0 0 chr1 244640099 244640120 -37553544 + (CA)n Simple_repeat Simple_repeat 1 21 0 514 304 55 18 chr1 244640147 244640364 -37553300 + MIR SINE MIR 31 255 -7 187 273 0 0 chr1 244640385 244640429 -37553235 - L2 LINE L2 -24 3289 3246 2039 141 3 3 chr1 244641077 244641374 -37552290 - AluJb SINE Alu -15 297 1 23 33 0 0 chr1 244641608 244641638 -37552026 + AT_rich Low_complexity Low_complexity 1 30 0 1961 158 10 0 chr1 244641745 244642043 -37551621 - AluJo SINE Alu -11 301 1 266 256 23 58 chr1 244642213 244642299 -37551365 - L2 LINE L2 -3 3269 3187 376 174 122 0 chr1 244642626 244642724 -37550940 - FRAM SINE Alu -10 156 47 1141 259 97 27 chr1 244642724 244643078 -37550586 + L2 LINE L2 753 1140 -2174 1895 137 61 0 chr1 244643078 244643355 -37550309 - AluSx SINE Alu -18 294 1 1141 259 97 27 chr1 244643355 244643401 -37550263 + L2 LINE L2 1140 1181 -2133 1030 164 12 0 chr1 244643401 244643566 -37550098 + AluSg/x SINE Alu 120 286 -24 2132 132 0 0 chr1 244643589 244643878 -37549786 + AluSx SINE Alu 1 289 -23 2136 128 0 0 chr1 244643900 244644189 -37549475 - AluJb SINE Alu -23 289 1 2879 257 173 27 chr1 244644214 244644835 -37548829 + L2 LINE L2 1534 2063 -1250 2253 126 0 0 chr1 244644835 244645136 -37548528 + AluSx SINE Alu 1 301 -11 2879 257 173 27 chr1 244645136 244646064 -37547600 + L2 LINE L2 2063 3308 -5 383 340 25 19 chr1 244647767 244647903 -37545761 + MIR SINE MIR 47 186 -76 8850 94 14 5 chr1 244647903 244649174 -37544490 + HSMAR1 DNA Mariner 3 1285 -2 383 340 25 19 chr1 244649174 244649196 -37544468 + MIR SINE MIR 186 206 -56 1425 152 0 5 chr1 244649308 244649518 -37544146 + AluJb SINE Alu 85 293 -19 1441 209 65 3 chr1 244650084 244650438 -37543226 - L1ME1 LINE L1 -5 6161 5786 718 142 33 8 chr1 244650456 244650576 -37543088 + AluJb SINE Alu 2 124 -188 1986 192 47 63 chr1 244650615 244650980 -37542684 - L1ME1 LINE L1 -389 5777 5408 1552 172 0 80 chr1 244650980 244651282 -37542382 + AluJo SINE Alu 1 278 -34 1986 192 47 63 chr1 244651282 244651408 -37542256 - L1ME1 LINE L1 -758 5408 5282 1819 162 17 17 chr1 244651408 244651705 -37541959 + AluJo SINE Alu 1 297 -15 1986 192 47 63 chr1 244651705 244651992 -37541672 - L1ME1 LINE L1 -884 5282 5010 234 264 83 28 chr1 244652248 244652392 -37541272 + HAL1 LINE L1 1386 1537 -970 597 153 122 15 chr1 244652404 244652526 -37541138 + FAM SINE Alu 1 35 -150 2270 112 0 3 chr1 244652526 244652821 -37540843 - AluSx SINE Alu -18 294 1 229 125 0 0 chr1 244652879 244652911 -37540753 + L1P LINE L1 1860 1891 -4255 1968 104 28 80 chr1 244652993 244653319 -37540345 + AluSx SINE Alu 1 309 -3 364 193 68 23 chr1 244653329 244653417 -37540247 - L1MC4 LINE L1 -1336 6706 6615 317 333 38 19 chr1 244653331 244653436 -37540228 + L1MC4 LINE L1 6613 6719 -1323 * 2158 128 0 0 chr1 244653575 244653872 -37539792 - AluSx SINE Alu -15 297 1 767 171 22 99 chr1 244653897 244654010 -37539654 - MLT1B LTR MaLR -119 271 182 891 144 0 0 chr1 244654010 244654142 -37539522 - FLAM_C SINE Alu 0 133 2 767 171 22 99 chr1 244654142 244654250 -37539414 - MLT1B LTR MaLR -208 182 67 * 841 137 6 56 chr1 244654241 244654402 -37539262 - MLT1B LTR MaLR -237 153 1 1435 165 30 23 chr1 244654404 244654707 -37538957 + L1M3 LINE L1 4879 5183 -963 659 177 121 7 chr1 244654707 244654848 -37538816 + MLT1A1 LTR MaLR 1 157 -208 2432 95 0 0 chr1 244654848 244655154 -37538510 + AluSx SINE Alu 1 306 -6 780 235 20 5 chr1 244655411 244655607 -37538057 + MLT1A1 LTR MaLR 167 365 0 1097 125 18 65 chr1 244655607 244655757 -37537907 + L1M3 LINE L1 5179 5312 -868 1536 167 55 11 chr1 244655757 244656032 -37537632 + AluJb SINE Alu 1 287 -25 1097 125 18 65 chr1 244656032 244656185 -37537479 + L1M3 LINE L1 5312 5471 -709 1893 163 3 6 chr1 244656356 244656669 -37536995 + AluSx SINE Alu 1 312 0 254 358 32 0 chr1 244657080 244657175 -37536489 - MIR SINE MIR -152 110 13 1168 241 30 57 chr1 244657654 244658060 -37535604 + L2 LINE L2 2919 3313 0 356 301 182 0 chr1 244658357 244658560 -37535104 - MIR SINE MIR -9 253 14 222 37 0 0 chr1 244658861 244658888 -37534776 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1927 143 0 27 chr1 244658902 244659196 -37534468 - AluJb SINE Alu -26 286 1 222 171 0 0 chr1 244659399 244659440 -37534224 + (TA)n Simple_repeat Simple_repeat 1 41 0 1817 102 132 0 chr1 244659491 244659757 -37533907 + AluSx SINE Alu 1 301 -11 268 304 206 0 chr1 244660334 244660426 -37533238 + L2 LINE L2 3147 3257 -15 837 144 0 8 chr1 244660438 244660563 -37533101 + FLAM_C SINE Alu 1 124 -9 25 0 0 0 chr1 244660563 244660588 -37533076 + AT_rich Low_complexity Low_complexity 1 25 0 262 329 13 0 chr1 244660588 244660664 -37533000 + GA-rich Low_complexity Low_complexity 4 80 0 437 248 73 7 chr1 244661100 244661237 -37532427 - MIR3 SINE MIR -54 154 9 275 324 67 33 chr1 244661261 244661471 -37532193 - L3 LINE CR1 -7 1570 1354 187 100 25 25 chr1 244661724 244661764 -37531900 + (GAGAA)n Simple_repeat Simple_repeat 3 42 0 937 188 62 5 chr1 244661810 244662018 -37531646 - MIR SINE MIR -10 252 33 379 221 107 16 chr1 244662120 244662242 -37531422 + MIR SINE MIR 21 153 -109 2268 100 3 25 chr1 244662269 244662589 -37531075 + AluSq SINE Alu 1 313 0 2375 100 3 3 chr1 244662599 244662909 -37530755 + AluSp SINE Alu 1 310 -3 273 254 118 0 chr1 244662918 244663028 -37530636 + MIR SINE MIR 137 259 -3 258 294 111 8 chr1 244663072 244663198 -37530466 - MIR SINE MIR -71 191 53 1834 134 3 17 chr1 244663618 244663927 -37529737 + AluJb SINE Alu 9 312 0 21 0 0 0 chr1 244663975 244663996 -37529668 + AT_rich Low_complexity Low_complexity 1 21 0 803 183 30 18 chr1 244664017 244664186 -37529478 - MLT1D LTR MaLR 0 505 335 597 170 0 0 chr1 244664216 244664310 -37529354 - AluJ/FLAM SINE Alu -217 95 2 281 255 131 65 chr1 244664749 244664902 -37528762 + MER20B DNA MER1_type 18 180 -603 22 0 0 0 chr1 244665238 244665260 -37528404 + AT_rich Low_complexity Low_complexity 1 22 0 1058 147 6 0 chr1 244665296 244665452 -37528212 - AluSg/x SINE Alu -31 281 125 296 256 263 12 chr1 244665638 244665798 -37527866 + MIR SINE MIR 48 247 -15 1220 140 0 47 chr1 244665826 244666040 -37527624 + AluJb SINE Alu 102 305 -7 1953 106 7 4 chr1 244666289 244666564 -37527100 + AluSx SINE Alu 1 276 -36 436 252 9 19 chr1 244666838 244666945 -37526719 - HsTC2 DNA Tc2 -1792 106 1 1873 164 0 10 chr1 244667209 244667507 -37526157 - AluSx SINE Alu -17 295 1 847 134 0 67 chr1 244667507 244667656 -37526008 - AluJb SINE Alu -171 141 3 24 0 0 0 chr1 244669036 244669060 -37524604 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 244675553 244675574 -37518090 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 244676369 244676390 -37517274 + GC_rich Low_complexity Low_complexity 1 21 0 596 239 56 28 chr1 244676679 244676859 -37516805 + MIR3 SINE MIR 23 207 -1 2418 94 0 0 chr1 244679146 244679454 -37514210 + AluSq SINE Alu 1 308 -5 295 163 0 0 chr1 244679902 244679971 -37513693 + MIR SINE MIR 81 150 -58 850 301 44 44 chr1 244680670 244681032 -37512632 + L2 LINE L2 2911 3272 0 903 106 0 8 chr1 244681072 244681195 -37512469 - AluSq/x SINE Alu -188 125 4 219 320 23 0 chr1 244681475 244681575 -37512089 - MIR SINE MIR -43 165 63 2204 101 0 3 chr1 244681592 244681890 -37511774 - AluSx SINE Alu -15 297 1 493 264 164 0 chr1 244682284 244682443 -37511221 - MER5A DNA MER1_type 0 189 5 22 0 0 0 chr1 244682499 244682521 -37511143 + AT_rich Low_complexity Low_complexity 1 22 0 2305 119 0 0 chr1 244682548 244682851 -37510813 - AluSx SINE Alu -9 303 1 1333 79 0 0 chr1 244682931 244683096 -37510568 - AluSg/x SINE Alu -22 288 124 31 0 0 0 chr1 244683101 244683132 -37510532 + AT_rich Low_complexity Low_complexity 1 31 0 519 234 73 7 chr1 244684301 244684438 -37509226 + MIR SINE MIR 96 241 -21 1496 231 146 14 chr1 244684438 244684883 -37508781 + MLT1D LTR MaLR 1 504 -1 2333 114 0 0 chr1 244685034 244685333 -37508331 + AluSx SINE Alu 1 299 -13 249 146 0 0 chr1 244685350 244685398 -37508266 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 200 217 83 17 chr1 244685533 244685593 -37508071 + L2 LINE L2 3200 3263 -50 1199 178 146 0 chr1 244686109 244686362 -37507302 + AluJb SINE Alu 1 290 -12 2076 226 70 112 chr1 244686522 244686694 -37506970 - L1MC4 LINE L1 -61 7981 7803 260 234 0 0 chr1 244686694 244686741 -37506923 + MER66B LTR ERV1 298 344 -142 2076 226 70 112 chr1 244686741 244686987 -37506677 - L1MC4 LINE L1 -239 7803 7548 1898 133 23 27 chr1 244686987 244687288 -37506376 - AluSx SINE Alu -12 300 1 2076 226 70 112 chr1 244687288 244687904 -37505760 - L1MC4 LINE L1 -494 7548 6945 696 229 70 45 chr1 244688005 244688158 -37505506 + MIR SINE MIR 5 169 -93 2161 101 3 17 chr1 244688158 244688466 -37505198 - AluSp SINE Alu 0 304 1 696 229 70 45 chr1 244688466 244688555 -37505109 + MIR SINE MIR 169 254 -8 523 144 136 72 chr1 244688688 244688813 -37504851 - FLAM_C SINE Alu 0 133 1 181 316 58 22 chr1 244688831 244688970 -37504694 - MIR3 SINE MIR -5 203 60 2208 100 7 0 chr1 244689640 244689941 -37503723 - AluSx SINE Alu 0 303 1 659 114 0 57 chr1 244690010 244690133 -37503531 + L1MC5 LINE L1 7723 7838 -123 183 80 0 0 chr1 244690236 244690261 -37503403 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2098 122 0 47 chr1 244690306 244690444 -37503220 + AluSx SINE Alu 1 144 -168 2421 88 0 0 chr1 244690444 244690740 -37502924 + AluSg SINE Alu 1 296 -14 2098 122 0 47 chr1 244690740 244690922 -37502742 + AluSx SINE Alu 144 306 -6 311 284 23 0 chr1 244691284 244691372 -37502292 + L1MC4 LINE L1 6614 6703 -1339 222 211 0 0 chr1 244691372 244691410 -37502254 + (TATG)n Simple_repeat Simple_repeat 2 39 0 339 289 0 0 chr1 244691410 244691500 -37502164 + L1MC4 LINE L1 6614 6703 -1339 386 138 92 0 chr1 244691508 244691573 -37502091 - AluS SINE Alu -10 292 222 2427 99 3 0 chr1 244691611 244691915 -37501749 + AluSx SINE Alu 1 305 -7 1092 176 5 41 chr1 244692551 244692772 -37500892 + AluJb SINE Alu 86 298 -14 211 337 45 11 chr1 244693222 244693311 -37500353 + MIR3 SINE MIR 117 208 0 2419 88 13 0 chr1 244693778 244694086 -37499578 - AluSx SINE Alu 0 312 1 2413 98 0 0 chr1 244694379 244694684 -37498980 + AluY SINE Alu 1 305 -6 372 314 16 8 chr1 244694872 244694993 -37498671 + MIR SINE MIR 16 137 -71 212 321 179 0 chr1 244695022 244695128 -37498536 + MER5B DNA MER1_type 54 178 0 21 0 0 0 chr1 244695332 244695353 -37498311 + AT_rich Low_complexity Low_complexity 1 21 0 236 167 194 0 chr1 244696148 244696220 -37497444 - L1M LINE L1 -2467 5341 5256 1222 257 82 20 chr1 244696220 244696624 -37497040 - LTR16A LTR ERVL -6 444 16 279 0 0 0 chr1 244696732 244696763 -37496901 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2126 104 11 0 chr1 244696766 244697045 -37496619 - AluSp SINE Alu -31 282 1 749 216 24 12 chr1 244698089 244698256 -37495408 - MER69A DNA AcHobo -8 169 1 422 222 52 98 chr1 244698281 244698475 -37495189 + MIR SINE MIR 77 261 -1 2222 139 0 0 chr1 244699059 244699362 -37494302 - AluJb SINE Alu -9 303 1 399 333 161 9 chr1 244700627 244700951 -37492713 - L2 LINE L2 -4 3268 2896 293 310 28 42 chr1 244701492 244701634 -37492030 + MLT1L LTR MaLR 370 509 -106 279 71 0 0 chr1 244702280 244702322 -37491342 + (GA)n Simple_repeat Simple_repeat 1 42 0 207 204 93 0 chr1 244702609 244702663 -37491001 + L2 LINE L2 2421 2479 -835 2217 103 13 13 chr1 244702745 244703045 -37490619 - AluSq SINE Alu -13 300 1 242 303 61 57 chr1 244703480 244703708 -37489956 + MLT1K LTR MaLR 125 353 -235 2325 99 0 10 chr1 244703816 244704119 -37489545 + AluSx SINE Alu 1 300 -12 585 105 0 0 chr1 244704119 244704205 -37489459 + (TA)n Simple_repeat Simple_repeat 2 87 0 343 267 28 57 chr1 244704319 244704495 -37489169 + MLT1K LTR MaLR 411 581 -7 21 36 0 0 chr1 244705387 244705415 -37488249 + AT_rich Low_complexity Low_complexity 1 28 0 2129 122 0 10 chr1 244705421 244705715 -37487949 + AluSx SINE Alu 1 291 -21 525 237 208 19 chr1 244705896 244706103 -37487561 - MIR SINE MIR 0 262 17 1446 152 0 5 chr1 244707463 244707687 -37485977 - AluJo SINE Alu -3 309 87 365 256 11 0 chr1 244707695 244707785 -37485879 - MIR SINE MIR -64 144 54 1346 128 0 0 chr1 244708788 244708967 -37484697 - AluJb SINE Alu -4 308 130 439 319 44 6 chr1 244709160 244709320 -37484344 - MIR SINE MIR -8 254 89 2448 88 0 3 chr1 244709377 244709683 -37483981 - AluSq SINE Alu -8 305 1 263 193 0 0 chr1 244709701 244709761 -37483903 - MIR SINE MIR -52 156 96 2339 121 0 0 chr1 244710349 244710656 -37483008 - AluSx SINE Alu -3 309 3 652 108 142 33 chr1 244710805 244710925 -37482739 + AluJo SINE Alu 1 133 -169 322 269 19 16 chr1 244710972 244711084 -37482580 - L1MC4 LINE L1 -1103 6702 6572 357 209 0 15 chr1 244711001 244711068 -37482596 + L1MCa LINE L1 1999 2064 -4362 475 216 101 54 chr1 244711088 244711236 -37482428 + L2 LINE L2 3159 3313 0 191 289 8 99 chr1 244712409 244712450 -37481214 - MER5A DNA MER1_type -25 164 121 1616 164 17 24 chr1 244712450 244712765 -37480899 + AluJo SINE Alu 1 313 0 191 289 8 99 chr1 244712765 244712843 -37480821 - MER5A DNA MER1_type -68 121 55 326 309 119 8 chr1 244712885 244713011 -37480653 + MIR3 SINE MIR 16 155 -53 218 269 0 15 chr1 244713170 244713237 -37480427 - MIR SINE MIR -35 227 162 924 189 10 35 chr1 244713246 244713410 -37480254 + MER3 DNA MER1_type 10 171 -38 2288 105 0 0 chr1 244713410 244713720 -37479944 + AluSq SINE Alu 1 310 0 924 189 10 35 chr1 244713720 244713755 -37479909 + MER3 DNA MER1_type 171 205 -4 206 314 223 25 chr1 244713773 244713894 -37479770 - MIR SINE MIR -107 155 11 550 289 17 12 chr1 244714188 244714361 -37479303 - MIR SINE MIR -76 186 13 305 262 8 24 chr1 244715198 244715452 -37478212 + (CA)n Simple_repeat Simple_repeat 1 249 0 240 346 115 0 chr1 244717484 244717588 -37476076 + L2 LINE L2 3143 3258 -14 469 151 0 126 chr1 244717588 244717655 -37476009 + AluJo SINE Alu 133 180 -132 2462 100 0 0 chr1 244717655 244717966 -37475698 - AluSq SINE Alu -2 311 1 469 151 0 126 chr1 244717966 244718017 -37475647 + AluJo SINE Alu 180 236 -76 613 260 160 33 chr1 244718951 244719313 -37474351 + HAL1 LINE L1 968 1375 -1132 2163 63 52 0 chr1 244719690 244719993 -37473671 + AluY SINE Alu 1 317 0 965 227 52 4 chr1 244719994 244720223 -37473441 + MIR SINE MIR 23 262 0 302 175 0 18 chr1 244720539 244720596 -37473068 - L1MC4 LINE L1 -1339 6703 6648 393 159 0 0 chr1 244720712 244720775 -37472889 - MER63 DNA MER1_type -99 737 675 3358 18 2 0 chr1 244720874 244721275 -37472389 + L1PA3 LINE L1 5558 5959 -196 2570 25 9 6 chr1 244721275 244721628 -37472036 + L1PA3 LINE L1 5829 6155 0 763 145 23 76 chr1 244722027 244722199 -37471465 - MER5A DNA MER1_type -24 165 3 569 272 44 66 chr1 244722450 244722678 -37470986 + MIR SINE MIR 7 229 -33 2340 100 3 10 chr1 244722792 244723102 -37470562 - AluSg SINE Alu -2 308 1 436 305 0 8 chr1 244723443 244723561 -37470103 + L2 LINE L2 3156 3272 0 865 163 49 22 chr1 244723857 244724041 -37469623 + MER53 DNA DNA 1 189 0 1409 93 62 12 chr1 244724581 244724839 -37468825 + L1MA2 LINE L1 6034 6304 0 1995 130 39 0 chr1 244724850 244725124 -37468540 + AluSx SINE Alu 1 288 -24 224 29 0 29 chr1 244725124 244725158 -37468506 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 1952 156 32 0 chr1 244726921 244727203 -37466461 + AluJb SINE Alu 1 291 -21 237 345 11 0 chr1 244728554 244728641 -37465023 + MIR SINE MIR 59 146 -116 260 266 191 0 chr1 244728895 244728989 -37464675 - L2 LINE L2 0 3313 3202 353 225 58 58 chr1 244729425 244729545 -37464119 + MIR SINE MIR 28 147 -115 1110 177 26 47 chr1 244729777 244730009 -37463655 + AluJo SINE Alu 70 296 -16 286 247 71 0 chr1 244730178 244730263 -37463401 - MIR SINE MIR -95 167 77 2283 123 7 0 chr1 244730480 244730789 -37462875 - AluSq SINE Alu -2 311 1 298 159 32 32 chr1 244731369 244731432 -37462232 + L1M3 LINE L1 5725 5787 -396 776 150 8 0 chr1 244731434 244731561 -37462103 + FLAM_A SINE Alu 1 128 -5 243 230 178 30 chr1 244731676 244731811 -37461853 - MLT1K LTR MaLR -291 297 143 2305 92 10 3 chr1 244731881 244732184 -37461480 + AluSg SINE Alu 1 305 -5 356 253 23 11 chr1 244732337 244732424 -37461240 + MLT1J2 LTR MaLR 5 92 -358 962 209 11 0 chr1 244732541 244732723 -37460941 + MER58A DNA MER1_type 41 224 0 2331 126 0 0 chr1 244732833 244733143 -37460521 - AluSx SINE Alu -2 310 1 1059 170 39 0 chr1 244733147 244733329 -37460335 - AluJo SINE Alu -17 295 107 2997 147 44 29 chr1 244733336 244733880 -37459784 - MER21A LTR ERV1 -8 923 372 1092 135 161 17 chr1 244733882 244734112 -37459552 - MER21A LTR ERV1 -667 264 2 591 131 30 0 chr1 244734112 244734211 -37459453 - AluJo SINE Alu -199 113 12 2376 112 0 0 chr1 244734232 244734537 -37459127 - AluSg SINE Alu -5 305 1 350 312 162 13 chr1 244735215 244735369 -37458295 + MIR SINE MIR 16 192 -70 3226 115 18 33 chr1 244735747 244735937 -37457727 - L1MA9 LINE L1 -6 6306 6115 2456 79 0 0 chr1 244735937 244736227 -37457437 + AluSc SINE Alu 1 290 -19 3226 115 18 33 chr1 244736227 244736609 -37457055 - L1MA9 LINE L1 -197 6115 5743 188 283 33 0 chr1 244736689 244736749 -37456915 + L2 LINE L2 2985 3046 -226 878 157 54 0 chr1 244736793 244736959 -37456705 - MER57A LTR ERV1 0 403 229 200 355 121 0 chr1 244737017 244737141 -37456523 - MIR SINE MIR 0 262 124 902 133 0 0 chr1 244737147 244737267 -37456397 - FLAM_C SINE Alu -21 122 3 360 295 70 32 chr1 244738251 244738440 -37455224 + MIR SINE MIR 55 258 -4 1910 122 49 35 chr1 244739517 244739803 -37453861 + AluSx SINE Alu 1 290 -22 965 203 0 11 chr1 244739873 244740050 -37453614 - FRAM SINE Alu 0 40 1 1670 148 32 84 chr1 244740098 244740409 -37453255 + AluJb SINE Alu 1 295 -17 2093 136 3 3 chr1 244740629 244740931 -37452733 - AluSx SINE Alu -10 302 1 744 236 42 29 chr1 244740945 244740989 -37452675 - L1ME LINE L1 -299 5822 5780 1981 121 57 0 chr1 244740989 244741270 -37452394 - AluSx SINE Alu -15 297 1 744 236 42 29 chr1 244741270 244741466 -37452198 - L1ME LINE L1 -341 5780 5579 228 331 51 38 chr1 244741605 244741762 -37451902 - MIR SINE MIR 0 262 104 1020 157 39 11 chr1 244741785 244742109 -37451555 - AluJb SINE Alu 0 457 129 204 111 0 0 chr1 244742111 244742147 -37451517 + (TG)n Simple_repeat Simple_repeat 1 36 0 274 156 0 0 chr1 244742148 244742193 -37451471 - AluJb SINE Alu -174 128 84 594 301 107 56 chr1 244742204 244742765 -37450899 - L1ME LINE L1 -1216 4930 4325 197 231 19 19 chr1 244743421 244743473 -37450191 + MIR SINE MIR 82 133 -75 21 0 0 31 chr1 244743854 244743873 -37449791 + AT_rich Low_complexity Low_complexity 1 20 -11 2229 123 0 0 chr1 244743873 244744166 -37449498 + AluSx SINE Alu 1 293 -19 21 0 0 31 chr1 244744166 244744178 -37449486 + AT_rich Low_complexity Low_complexity 20 31 0 2213 125 0 0 chr1 244745178 244745473 -37448191 - AluSx SINE Alu -17 295 1 198 0 0 0 chr1 244745524 244745546 -37448118 + (A)n Simple_repeat Simple_repeat 1 22 0 480 246 176 0 chr1 244746480 244746622 -37447042 + MER5A DNA MER1_type 17 183 -6 342 321 38 8 chr1 244747495 244747626 -37446038 - MIR SINE MIR -106 156 22 2409 110 0 0 chr1 244747855 244748165 -37445499 - AluSx SINE Alu -2 310 1 1744 148 44 4 chr1 244748526 244748825 -37444839 - AluJb SINE Alu 0 310 1 297 0 0 0 chr1 244748916 244748949 -37444715 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr1 244749115 244749136 -37444528 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 385 291 34 0 chr1 244750294 244750411 -37443253 + MIR SINE MIR 110 230 -32 654 280 102 4 chr1 244751064 244751300 -37442364 + L2 LINE L2 3054 3312 -1 1487 264 82 78 chr1 244751433 244751568 -37442096 + MER45C DNA AcHobo 8 141 -812 2179 104 0 14 chr1 244751568 244751881 -37441783 - AluSx SINE Alu 0 309 1 1487 264 82 78 chr1 244751881 244752414 -37441250 + MER45C DNA AcHobo 141 680 -273 1359 168 78 32 chr1 244752492 244752801 -37440863 + MER45B DNA AcHobo 715 1037 -3 1391 154 13 82 chr1 244753203 244753609 -37440055 - Ricksha DNA DNA -13 3238 2918 904 160 50 3 chr1 244753609 244753848 -37439816 + AluJ SINE Alu 2 311 -1 6238 128 39 2 chr1 244753860 244754868 -37438796 - Ricksha DNA DNA -313 2933 1889 1264 167 13 17 chr1 244754939 244755178 -37438486 - AluJb SINE Alu -30 282 45 2575 147 15 4 chr1 244756398 244757058 -37436606 - Ricksha DNA DNA -1354 1892 1190 2889 134 78 0 chr1 244757059 244757523 -37436141 - Ricksha DNA DNA -754 500 1 964 175 30 0 chr1 244757531 244757697 -37435967 - MER20 DNA MER1_type -48 171 1 189 121 0 0 chr1 244759146 244759179 -37434485 + (T)n Simple_repeat Simple_repeat 1 33 0 387 267 195 23 chr1 244759517 244759738 -37433926 - L2 LINE L2 -116 3197 2939 851 215 17 0 chr1 244759926 244760098 -37433566 - FAM SINE Alu 0 175 1 21 0 0 0 chr1 244760748 244760769 -37432895 + AT_rich Low_complexity Low_complexity 1 21 0 2367 67 3 0 chr1 244761618 244761918 -37431746 + AluY SINE Alu 1 301 -10 2193 112 0 0 chr1 244762863 244763167 -37430497 + AluSq SINE Alu 1 304 -9 829 143 7 48 chr1 244763602 244763749 -37429915 + FLAM_C SINE Alu 3 143 0 1153 161 32 42 chr1 244765654 244765871 -37427793 - MER20 DNA MER1_type -4 215 1 243 100 0 50 chr1 244765888 244765948 -37427716 + (GAAAA)n Simple_repeat Simple_repeat 2 58 0 187 340 124 0 chr1 244766593 244766690 -37426974 - L2 LINE L2 0 3272 3164 363 251 97 39 chr1 244767351 244767558 -37426106 + L1ME LINE L1 5549 5767 -354 23 33 0 0 chr1 244767716 244767746 -37425918 + AT_rich Low_complexity Low_complexity 1 30 0 278 262 21 83 chr1 244767746 244767891 -37425773 - MER5A DNA MER1_type -50 139 4 2097 124 0 16 chr1 244768248 244768562 -37425102 + AluSx SINE Alu 1 309 -3 1931 125 32 0 chr1 244768935 244769237 -37424427 - AluJb SINE Alu 0 311 1 826 112 15 30 chr1 244771197 244771331 -37422333 + AluJo SINE Alu 5 136 -176 1848 121 13 35 chr1 244771331 244771644 -37422020 + AluSx SINE Alu 1 306 -6 1735 198 70 8 chr1 244772204 244772577 -37421087 + MSTD LTR MaLR 1 396 0 2122 101 17 0 chr1 244772584 244772882 -37420782 + AluSg SINE Alu 1 303 -7 266 236 55 0 chr1 244773458 244773513 -37420151 - L2 LINE L2 -6 3266 3209 895 125 7 14 chr1 244773581 244773725 -37419939 + AluYb8 SINE Alu 1 143 -175 1414 120 14 5 chr1 244773725 244773941 -37419723 + AluSc SINE Alu 89 306 -3 2411 53 0 3 chr1 244773943 244774243 -37419421 + AluY SINE Alu 3 301 -10 240 244 151 23 chr1 244774648 244774734 -37418930 - L2 LINE L2 0 3272 3176 1553 160 32 11 chr1 244775086 244775368 -37418296 - AluJo SINE Alu -24 288 1 2259 106 0 0 chr1 244775387 244775698 -37417966 - AluSx SINE Alu 0 312 2 346 291 18 36 chr1 244775721 244775831 -37417833 + L2 LINE L2 2308 2415 -899 357 300 11 0 chr1 244775847 244775937 -37417727 + L2 LINE L2 3223 3313 0 197 250 36 0 chr1 244776532 244776588 -37417076 + L3 LINE CR1 1332 1389 -188 1663 161 106 33 chr1 244776718 244777048 -37416616 + MLT1A1 LTR MaLR 1 354 -11 1908 125 0 0 chr1 244777217 244777489 -37416175 - AluSx SINE Alu -40 272 1 196 269 39 0 chr1 244777490 244777542 -37416122 + MIR SINE MIR 64 117 -91 181 270 70 50 chr1 244777817 244777917 -37415747 - L2 LINE L2 -208 3064 2963 644 332 166 26 chr1 244778035 244778894 -37414770 - L2 LINE L2 -547 2767 1788 2347 178 52 9 chr1 244779275 244779741 -37413923 - MER66B LTR ERV1 0 486 1 253 246 138 0 chr1 244780110 244780175 -37413489 - MIR SINE MIR -123 139 66 2108 100 0 0 chr1 244780258 244780559 -37413105 + AluSg SINE Alu 1 301 0 384 248 41 65 chr1 244780762 244780948 -37412716 + MIR SINE MIR 37 215 -47 233 57 29 0 chr1 244781370 244781405 -37412259 + (TC)n Simple_repeat Simple_repeat 1 36 0 1890 116 3 26 chr1 244781864 244782166 -37411498 - AluSq SINE Alu 0 313 19 1672 195 26 21 chr1 244782166 244782613 -37411051 + LTR2B LTR ERV1 1 490 0 2544 133 2 28 chr1 244782613 244783010 -37410654 + Harlequin LTR ERV1 1 387 -6509 * 8793 65 12 15 chr1 244783003 244784166 -37409498 + Harlequin LTR ERV1 263 1422 -5474 * 40779 60 7 6 chr1 244784146 244789232 -37404432 + Harlequin LTR ERV1 1806 6896 0 2062 176 68 32 chr1 244789251 244789694 -37403970 + LTR2B LTR ERV1 32 490 0 311 292 83 0 chr1 244789982 244790126 -37403538 - MIR SINE MIR -22 240 85 362 169 52 0 chr1 244790580 244790657 -37403007 + L1MC3 LINE L1 7697 7777 -8 303 200 308 39 chr1 244790932 244791062 -37402602 - MIR SINE MIR -91 171 7 378 272 0 22 chr1 244791083 244791175 -37402489 - L1MC4 LINE L1 -1339 6703 6614 1741 163 3 29 chr1 244791186 244791492 -37402172 - AluJo SINE Alu -14 298 1 288 262 167 0 chr1 244792423 244792507 -37401157 - MER81 DNA DNA -16 98 1 375 196 72 0 chr1 244792582 244792679 -37400985 + MER5A DNA MER1_type 9 112 -77 351 291 85 43 chr1 244793042 244793144 -37400520 - L1MC4 LINE L1 -1339 6703 6592 1766 137 11 7 chr1 244793144 244793429 -37400235 - AluJb SINE Alu -18 294 9 351 291 85 43 chr1 244793429 244793467 -37400197 - L1MC4 LINE L1 -1450 6592 6557 305 252 73 80 chr1 244793538 244793689 -37399975 - MER5A DNA MER1_type -2 187 38 22 35 0 0 chr1 244794080 244794109 -37399555 + GC_rich Low_complexity Low_complexity 1 29 0 332 180 90 22 chr1 244794729 244794818 -37398846 - MIR SINE MIR -31 231 137 2114 117 0 0 chr1 244794993 244795292 -37398372 + AluSg SINE Alu 3 301 -9 461 96 0 14 chr1 244795292 244795365 -37398299 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 1664 123 11 35 chr1 244795390 244795675 -37397989 + AluJo SINE Alu 30 307 -5 227 133 0 33 chr1 244795886 244795946 -37397718 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 1721 185 96 44 chr1 244796123 244796582 -37397082 + MER21B LTR ERV1 329 811 -52 354 278 64 94 chr1 244796626 244796892 -37396772 + L2 LINE L2 2986 3243 -29 442 282 8 30 chr1 244796992 244797123 -37396541 + MIR SINE MIR 2 129 -133 472 50 0 0 chr1 244798147 244798207 -37395457 + Alu SINE Alu 238 297 -15 2422 153 53 20 chr1 244798453 244798642 -37395022 + MLT1C LTR MaLR 1 182 -285 192 40 0 0 chr1 244798642 244798667 -37394997 + (CA)n Simple_repeat Simple_repeat 2 26 0 2422 153 53 20 chr1 244798667 244798929 -37394735 + MLT1C LTR MaLR 182 467 0 390 296 32 38 chr1 244799183 244799369 -37394295 - L2 LINE L2 -1 3312 3128 380 231 143 7 chr1 244799766 244799913 -37393751 + MER5A DNA MER1_type 1 167 -22 1891 132 7 26 chr1 244800022 244800325 -37393339 - AluSx SINE Alu -6 306 10 325 255 85 78 chr1 244800334 244800475 -37393189 + MIR SINE MIR 121 262 0 1993 126 7 0 chr1 244801242 244801535 -37392129 + AluSx SINE Alu 5 299 -13 622 89 89 0 chr1 244801750 244801840 -37391824 - MSTD LTR MaLR -1 456 359 4499 73 2 0 chr1 244801840 244802390 -37391274 + MER41A LTR ERV1 2 552 -2 292 107 347 13 chr1 244802394 244802469 -37391195 + MER41A-int LTR ERV1 3 102 -5844 9172 137 134 15 chr1 244802478 244804186 -37389478 + MER41A-int LTR ERV1 1 2017 -3929 276 157 59 0 chr1 244804182 244804233 -37389431 + MER41A-int LTR ERV1 2167 2220 -3726 * 2845 114 44 82 chr1 244804229 244804513 -37389151 + MER41A-int LTR ERV1 2186 2479 -4202 2059 105 0 0 chr1 244804513 244804789 -37388875 + AluSx SINE Alu 6 281 -31 447 141 0 0 chr1 244804725 244804789 -37388875 + AluSg/x SINE Alu 215 299 0 190 0 0 0 chr1 244804789 244804810 -37388854 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2845 114 44 82 chr1 244804810 244804887 -37388777 + MER41A-int LTR ERV1 2478 2556 -4125 2378 106 0 0 chr1 244804887 244805188 -37388476 - AluSc SINE Alu -8 301 1 2845 114 44 82 chr1 244805188 244805710 -37387954 + MER41A-int LTR ERV1 2556 4443 -2238 802 52 0 0 chr1 244805725 244805821 -37387843 + MER41A-int LTR ERV1 5845 5940 -6 4192 101 0 5 chr1 244805825 244806382 -37387282 + MER41A LTR ERV1 1 554 0 1187 168 113 40 chr1 244806382 244806656 -37387008 - MSTD LTR MaLR -102 294 1 2128 111 13 20 chr1 244807092 244807398 -37386266 - AluSq SINE Alu -9 304 1 218 219 151 27 chr1 244808102 244808175 -37385489 + MIR SINE MIR 35 116 -146 802 149 13 7 chr1 244808187 244808341 -37385323 - L1MB3 LINE L1 -1 6182 6028 1529 166 71 42 chr1 244808341 244808631 -37385033 + L1MB2 LINE L1 5822 6125 -46 2378 85 0 7 chr1 244808631 244808924 -37384740 + AluSx SINE Alu 2 292 -20 1529 166 71 42 chr1 244808924 244808970 -37384694 + L1MB2 LINE L1 6125 6168 -3 2253 114 10 0 chr1 244809005 244809304 -37384360 - AluJb SINE Alu -10 302 1 429 177 0 0 chr1 244809309 244809388 -37384276 + MIR SINE MIR 107 185 -77 1817 160 17 3 chr1 244809785 244809956 -37383708 - AluSx SINE Alu -6 306 128 207 0 0 0 chr1 244809956 244809979 -37383685 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1817 160 17 3 chr1 244809979 244810095 -37383569 - AluSx SINE Alu -184 128 15 601 71 51 51 chr1 244810264 244810299 -37383365 - L1MB2 LINE L1 -5 6166 6132 2403 94 3 0 chr1 244810299 244810608 -37383056 - AluSp SINE Alu -3 310 1 601 71 51 51 chr1 244810608 244810670 -37382994 - L1MB2 LINE L1 -38 6133 6069 26 50 0 0 chr1 244810719 244810759 -37382905 + AT_rich Low_complexity Low_complexity 1 40 0 1167 139 0 11 chr1 244810764 244810944 -37382720 + FRAM SINE Alu 1 172 -4 2376 95 0 3 chr1 244811530 244811834 -37381830 - AluSx SINE Alu -9 303 1 3541 215 70 32 chr1 244811864 244812318 -37381346 - L1ME1 LINE L1 -5 6230 5795 2571 119 5 16 chr1 244812318 244812697 -37380967 + THE1C LTR MaLR 1 375 0 3541 215 70 32 chr1 244812697 244813399 -37380265 - L1ME1 LINE L1 -440 5795 5045 687 213 140 20 chr1 244813399 244813694 -37379970 + Tigger7 DNA MER2_type 2 2491 0 484 216 32 0 chr1 244813694 244813819 -37379845 - L1ME1 LINE L1 -1168 5047 4919 1403 212 189 12 chr1 244813825 244814254 -37379410 - MLT1D LTR MaLR 0 505 1 497 220 0 0 chr1 244814342 244814451 -37379213 - L1ME1 LINE L1 -1622 4593 4485 26 30 0 0 chr1 244814451 244814484 -37379180 + AT_rich Low_complexity Low_complexity 1 33 0 659 168 8 17 chr1 244814484 244814603 -37379061 - FRAM SINE Alu -21 155 38 1256 239 76 3 chr1 244814606 244814641 -37379023 - L1ME1 LINE L1 -1734 4481 4450 2304 126 30 30 chr1 244814641 244815005 -37378659 + THE1B LTR MaLR 1 364 0 1256 239 76 3 chr1 244815005 244815337 -37378327 - L1ME1 LINE L1 -1765 4450 4087 557 230 9 0 chr1 244815337 244815450 -37378214 + MER81 DNA DNA 1 114 0 2652 224 58 50 chr1 244815458 244815584 -37378080 - L1ME1 LINE L1 -5505 891 767 2220 136 0 0 chr1 244815584 244815885 -37377779 - AluSx SINE Alu -11 301 1 2652 224 58 50 chr1 244815885 244815970 -37377694 - L1ME1 LINE L1 -5629 767 684 2375 63 0 3 chr1 244815970 244816257 -37377407 - AluY SINE Alu -1 310 25 2652 224 58 50 chr1 244816257 244816816 -37376848 - L1ME1 LINE L1 -5712 684 114 209 255 0 0 chr1 244816817 244816868 -37376796 + L2 LINE L2 3144 3194 -78 485 246 42 0 chr1 244817310 244817452 -37376212 - MER103 DNA DNA -10 156 9 584 361 62 18 chr1 244817946 244818287 -37375377 + L2 LINE L2 2917 3272 0 558 0 0 0 chr1 244819194 244819256 -37374408 + (TG)n Simple_repeat Simple_repeat 2 63 0 2085 136 7 7 chr1 244819380 244819682 -37373982 - AluSx SINE Alu -10 302 1 2227 126 0 0 chr1 244820821 244821131 -37372533 - AluSx SINE Alu -2 310 1 190 266 63 0 chr1 244821415 244821494 -37372170 - L2 LINE L2 -219 3053 2970 990 229 94 83 chr1 244821510 244821990 -37371674 - MLT1K LTR MaLR -16 572 88 197 341 72 36 chr1 244822026 244822164 -37371500 - L2 LINE L2 -303 2969 2827 2618 122 41 5 chr1 244822605 244823016 -37370648 + MSTB LTR MaLR 1 426 0 2360 102 3 0 chr1 244823337 244823642 -37370022 - AluSx SINE Alu -6 306 1 297 0 0 0 chr1 244823975 244824008 -37369656 + (CA)n Simple_repeat Simple_repeat 1 33 0 1806 219 194 12 chr1 244824427 244824921 -37368743 - MLT1E LTR MaLR -9 584 1 1179 133 0 12 chr1 244825082 244825255 -37368409 - FRAM SINE Alu -6 170 1 274 287 72 51 chr1 244825352 244825547 -37368117 - MLT1K LTR MaLR -12 576 378 1029 163 0 0 chr1 244825928 244826094 -37367570 + FRAM SINE Alu 1 166 0 263 345 26 35 chr1 244826142 244826258 -37367406 + MIR SINE MIR 50 164 -98 1736 204 67 34 chr1 244826291 244826738 -37366926 + MLT1C LTR MaLR 6 467 0 229 214 0 0 chr1 244826997 244827039 -37366625 - L2 LINE L2 -20 3252 3211 304 319 11 11 chr1 244827084 244827175 -37366489 - MIR SINE MIR -170 92 2 1113 288 131 20 chr1 244827796 244828321 -37365343 + L2 LINE L2 2225 2885 -428 1693 126 20 108 chr1 244828321 244828663 -37365001 - AluYb8 SINE Alu -6 312 1 1113 288 131 20 chr1 244828663 244828947 -37364717 + L2 LINE L2 2885 3136 -177 1023 201 59 0 chr1 244828965 244829148 -37364516 + MER82 DNA MER2_type 8 202 -451 2839 97 32 25 chr1 244829148 244829591 -37364073 - Tigger2 DNA MER2_type 0 2718 2273 440 188 0 0 chr1 244829581 244829650 -37364014 - Tigger2 DNA MER2_type -2649 69 1 * 1383 229 12 8 chr1 244829650 244830066 -37363598 + MER82 DNA MER2_type 197 653 0 497 272 52 7 chr1 244830069 244830205 -37363459 + L2 LINE L2 3163 3304 -9 562 220 61 0 chr1 244832732 244832864 -37360800 + MER45A DNA AcHobo 39 178 0 254 308 28 0 chr1 244833076 244833183 -37360481 - L3 LINE CR1 -31 1546 1437 27 0 0 0 chr1 244833189 244833216 -37360448 + AT_rich Low_complexity Low_complexity 1 27 0 1463 134 0 79 chr1 244835617 244835871 -37357793 - AluJb SINE Alu -70 242 9 250 224 149 52 chr1 244835992 244836057 -37357607 - MIR SINE MIR -27 235 178 2171 100 17 17 chr1 244836057 244836357 -37357307 + AluSg SINE Alu 1 300 -10 250 224 149 52 chr1 244836357 244836425 -37357239 - MIR SINE MIR -84 178 89 775 122 22 77 chr1 244836682 244836863 -37356801 + L1MC4 LINE L1 7872 8042 0 22 35 0 0 chr1 244837007 244837036 -37356628 + AT_rich Low_complexity Low_complexity 1 29 0 2270 114 0 3 chr1 244837849 244838148 -37355516 - AluSx SINE Alu -14 298 1 387 299 120 33 chr1 244838221 244838462 -37355202 + HAL1 LINE L1 2246 2507 0 1524 193 88 44 chr1 244838471 244838881 -37354783 - MSTC LTR MaLR 0 428 1 382 228 170 29 chr1 244840353 244840524 -37353140 - MLT1K LTR MaLR -27 561 367 257 219 0 0 chr1 244841303 244841344 -37352320 - L1ME LINE L1 -5622 448 408 2045 104 22 4 chr1 244841582 244841860 -37351804 - AluSp SINE Alu -30 283 1 723 262 84 4 chr1 244842018 244842243 -37351421 + L1MC/D LINE L1 5514 5756 -2052 572 228 190 38 chr1 244842276 244842653 -37351011 + L1M4 LINE L1 2900 3341 -2805 542 172 115 33 chr1 244842653 244842775 -37350889 + FLAM_A SINE Alu 1 132 -1 572 228 190 38 chr1 244842775 244842791 -37350873 + L1M4 LINE L1 3341 3353 -2793 1142 244 78 65 chr1 244842796 244843320 -37350344 + L1M4 LINE L1 3590 4125 -2021 2267 104 0 3 chr1 244843320 244843617 -37350047 - AluY SINE Alu -15 296 1 1142 244 78 65 chr1 244843617 244843707 -37349957 + L1M4 LINE L1 4125 4212 -1934 395 261 124 43 chr1 244844557 244844718 -37348946 - MIR SINE MIR -7 255 82 2086 183 5 37 chr1 244845200 244845604 -37348060 + MLT2B1 LTR ERVL 7 397 -123 1254 193 5 0 chr1 244845573 244845783 -37347881 + MLT2B1 LTR ERVL 267 477 -43 1306 98 93 0 chr1 244845783 244845977 -37347687 - Tigger5 DNA MER2_type 0 2323 2112 1870 186 3 3 chr1 244845982 244846288 -37347376 - Tigger5 DNA MER2_type -2016 307 2 352 65 0 0 chr1 244846288 244846331 -37347333 + MLT2B1 LTR ERVL 470 512 -3 2205 134 10 0 chr1 244846554 244846853 -37346811 - AluSx SINE Alu -10 302 1 289 189 21 95 chr1 244848143 244848238 -37345426 - MER104 DNA Tc2 -73 107 20 1358 275 144 20 chr1 244848397 244849046 -37344618 - L2 LINE L2 -239 3074 2321 4000 97 18 4 chr1 244849046 244849592 -37344072 - MER41A LTR ERV1 0 554 1 1358 275 144 20 chr1 244849592 244849647 -37344017 - L2 LINE L2 -992 2321 2274 601 240 50 22 chr1 244849961 244850140 -37343524 - L1MC5 LINE L1 -76 7885 7702 888 286 63 44 chr1 244850144 244850676 -37342988 + L1M4 LINE L1 4490 5039 -1107 586 169 110 17 chr1 244850676 244850794 -37342870 + FLAM_A SINE Alu 4 132 -1 888 286 63 44 chr1 244850794 244850923 -37342741 + L1M4 LINE L1 5039 5164 -982 2071 108 10 16 chr1 244850924 244851230 -37342434 + AluSx SINE Alu 1 304 -8 3722 105 52 34 chr1 244851342 244851615 -37342049 - MER7C DNA MER2_type -2426 602 336 1989 154 0 7 chr1 244851615 244851913 -37341751 - AluSx SINE Alu -14 298 3 3722 105 52 34 chr1 244851913 244852229 -37341435 - MER7C DNA MER2_type -2692 336 2 2876 76 0 11 chr1 244853399 244853767 -37339897 - THE1B LTR MaLR 0 364 1 2264 71 17 27 chr1 244854049 244854345 -37339319 - AluY SINE Alu -18 293 1 302 167 0 0 chr1 244854479 244854527 -37339137 + MER58 DNA MER1_type 2373 2420 0 1249 230 43 13 chr1 244854527 244854831 -37338833 - L1ME LINE L1 -513 5653 5341 440 313 7 13 chr1 244855223 244855373 -37338291 - Charlie8 DNA MER1_type -2156 261 113 1954 126 3 25 chr1 244855703 244855989 -37337675 + AluSx SINE Alu 1 280 -32 357 65 0 0 chr1 244855989 244856035 -37337629 + Alu SINE Alu 234 279 -22 * 431 115 0 7 chr1 244856021 244856097 -37337567 + Alu SINE Alu 234 295 -16 309 317 134 36 chr1 244856134 244856358 -37337306 + MIR SINE MIR 6 251 -11 1072 216 219 17 chr1 244856802 244857204 -37336460 + MLT1D LTR MaLR 23 505 0 23 33 0 0 chr1 244857316 244857346 -37336318 + AT_rich Low_complexity Low_complexity 1 30 0 287 263 10 92 chr1 244857501 244857657 -37336007 + MER5A DNA MER1_type 48 175 -3 1789 180 18 13 chr1 244857668 244858052 -37335612 - MER58D DNA MER1_type 0 386 1 180 254 225 14 chr1 244858742 244858813 -37334851 - MIR SINE MIR -6 256 171 976 269 186 52 chr1 244858892 244859754 -37333910 + L2 LINE L2 1686 2662 -652 2274 102 3 0 chr1 244860156 244860460 -37333204 - AluSx SINE Alu -6 306 2 487 250 40 47 chr1 244860860 244861008 -37332656 + MIR SINE MIR 6 152 -110 867 257 101 51 chr1 244861339 244861670 -37331994 - L2 LINE L2 -2 3270 2899 2546 61 0 10 chr1 244861670 244861982 -37331682 + AluY SINE Alu 1 309 -2 867 257 101 51 chr1 244861982 244862184 -37331480 - L2 LINE L2 -373 2899 2709 225 94 0 0 chr1 244862290 244862322 -37331342 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 1710 134 50 32 chr1 244862322 244862605 -37331059 - AluJo SINE Alu -24 288 1 516 261 22 105 chr1 244862605 244862919 -37330745 - MER34 LTR ERV1 -182 360 73 946 215 99 4 chr1 244862929 244863162 -37330502 - HAL1 LINE L1 -1666 841 587 454 236 0 0 chr1 244863625 244863714 -37329950 - L2 LINE L2 -662 2652 2564 1810 141 47 10 chr1 244863716 244864013 -37329651 + AluSg SINE Alu 1 308 -2 1698 142 53 21 chr1 244864097 244864379 -37329285 - AluJb SINE Alu -21 291 1 219 114 0 0 chr1 244864603 244864638 -37329026 + (T)n Simple_repeat Simple_repeat 1 35 0 2112 97 17 17 chr1 244864727 244865026 -37328638 + AluSg SINE Alu 2 300 -10 241 196 36 0 chr1 244865038 244865094 -37328570 - MIR SINE MIR -116 146 89 22 0 0 0 chr1 244865372 244865394 -37328270 + AT_rich Low_complexity Low_complexity 1 22 0 369 214 37 104 chr1 244866034 244866244 -37327420 + MLT1H LTR MaLR 1 242 -307 831 237 190 6 chr1 244866247 244866589 -37327075 - Charlie2 DNA MER1_type -2274 508 104 22 0 0 0 chr1 244867721 244867743 -37325921 + AT_rich Low_complexity Low_complexity 1 22 0 415 233 50 0 chr1 244868081 244868201 -37325463 - MER63 DNA MER1_type 0 1062 937 783 166 111 34 chr1 244868226 244868629 -37325035 - MER63 DNA MER1_type -627 434 1 2289 106 3 0 chr1 244872096 244872398 -37321266 + AluSx SINE Alu 1 303 -9 342 287 11 0 chr1 244874100 244874194 -37319470 + L2 LINE L2 3172 3266 -47 215 286 65 26 chr1 244874945 244875022 -37318642 - L2 LINE L2 0 3272 3193 228 342 101 0 chr1 244875260 244875409 -37318255 + MER117 DNA MER1_type 34 197 0 1093 239 44 32 chr1 244875461 244875965 -37317699 - HAL1 LINE L1 -7 2500 1952 290 164 18 0 chr1 244875967 244876022 -37317642 - MER58 DNA MER1_type -4 2416 2361 2735 141 58 22 chr1 244876022 244876587 -37317077 + LTR24B LTR ERV1 1 635 0 629 197 23 8 chr1 244876587 244876719 -37316945 - MER58A DNA MER1_type 0 168 35 642 260 140 0 chr1 244876828 244877063 -37316601 - HAL1 LINE L1 -680 1827 1560 209 213 0 0 chr1 244877127 244877174 -37316490 + T-rich Low_complexity Low_complexity 1 47 0 319 190 76 13 chr1 244877204 244877283 -37316381 - HAL1 LINE L1 -1429 1078 995 1846 271 119 21 chr1 244877425 244878239 -37315425 - HAL1 LINE L1 -1598 909 16 2007 124 0 3 chr1 244878426 244878709 -37314955 + AluSg1 SINE Alu 1 282 -27 246 51 0 0 chr1 244878709 244878748 -37314916 + AluSg1 SINE Alu 259 297 -4 2312 103 0 3 chr1 244878748 244879060 -37314604 + AluY SINE Alu 1 311 0 263 200 0 18 chr1 244879316 244879371 -37314293 + Alu SINE Alu 1 54 -248 2199 96 3 3 chr1 244879679 244879971 -37313693 + AluSx SINE Alu 2 293 -19 595 277 60 37 chr1 244880558 244881041 -37312623 + HAL1b LINE L1 1 494 -854 1546 109 0 0 chr1 244881043 244881245 -37312419 + AluSg/x SINE Alu 93 294 -16 225 229 16 0 chr1 244881306 244881367 -37312297 + HAL1b LINE L1 587 648 -700 332 249 85 25 chr1 244881382 244881583 -37312081 + HAL1b LINE L1 695 907 -441 395 261 96 69 chr1 244881735 244882117 -37311547 + L1M4c LINE L1 2184 2576 -3806 1937 131 67 0 chr1 244882869 244883152 -37310512 - AluSx SINE Alu -10 302 1 25 0 0 0 chr1 244883691 244883716 -37309948 + AT_rich Low_complexity Low_complexity 1 25 0 1127 168 0 0 chr1 244883890 244884069 -37309595 + AluSg/x SINE Alu 120 298 -14 2432 76 3 10 chr1 244884383 244884686 -37308978 + AluSp SINE Alu 1 301 -12 1850 104 48 0 chr1 244885023 244885274 -37308390 + AluSx SINE Alu 33 295 -17 21 0 0 0 chr1 244885789 244885810 -37307854 + AT_rich Low_complexity Low_complexity 1 21 0 4029 85 9 25 chr1 244886466 244886797 -37306867 + MER41A LTR ERV1 1 321 -233 2660 45 0 0 chr1 244886797 244887108 -37306556 + AluY SINE Alu 1 311 0 4029 85 9 25 chr1 244887108 244887339 -37306325 + MER41A LTR ERV1 321 554 0 198 0 0 0 chr1 244888169 244888191 -37305473 + (TATAA)n Simple_repeat Simple_repeat 4 25 0 2012 123 3 7 chr1 244888304 244888618 -37305046 + AluSq SINE Alu 1 313 0 2411 92 3 0 chr1 244888631 244888936 -37304728 + AluSp SINE Alu 1 306 -7 22 0 0 0 chr1 244889378 244889400 -37304264 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr1 244890780 244890824 -37302840 + AT_rich Low_complexity Low_complexity 1 44 0 543 272 68 12 chr1 244890929 244891091 -37302573 - MIR SINE MIR -33 229 59 2009 125 21 0 chr1 244891256 244891545 -37302119 + AluSx SINE Alu 10 304 -8 2322 94 3 0 chr1 244892436 244892733 -37300931 + AluSx SINE Alu 1 298 -14 2190 88 35 3 chr1 244893635 244893920 -37299744 + AluSc SINE Alu 1 294 -15 295 325 39 19 chr1 244894217 244894371 -37299293 + MER20 DNA MER1_type 59 215 -4 417 127 14 14 chr1 244895271 244895342 -37298322 - AluS SINE Alu -247 71 1 2244 89 0 0 chr1 244895735 244896050 -37297614 - AluSx SINE Alu 0 330 16 327 225 116 22 chr1 244896050 244896188 -37297476 - L1M4 LINE L1 -869 5277 5127 278 71 24 0 chr1 244896195 244896237 -37297427 - MER57A LTR ERV1 -66 337 295 3465 242 65 12 chr1 244896256 244897448 -37296216 - L1M4 LINE L1 -1017 5129 3875 1835 139 37 9 chr1 244897467 244897791 -37295873 - L1PA16 LINE L1 -20 6146 5814 1870 140 3 14 chr1 244897854 244898147 -37295517 - AluSx SINE Alu -10 302 13 182 374 24 24 chr1 244898214 244898297 -37295367 - L2 LINE L2 -220 3052 2970 247 241 0 17 chr1 244898446 244898504 -37295160 - AluS SINE Alu -235 68 12 1804 156 3 35 chr1 244899074 244899388 -37294276 - AluJb SINE Alu -8 304 1 803 223 107 38 chr1 244899594 244899789 -37293875 + L1MC4a LINE L1 5559 5786 -2022 1260 78 113 0 chr1 244899789 244899993 -37293671 + L1MB2 LINE L1 5943 6169 -2 803 223 107 38 chr1 244899993 244900115 -37293549 + L1MC4a LINE L1 5786 5898 -1910 2463 71 3 0 chr1 244900138 244900449 -37293215 - AluSp SINE Alu -1 312 1 204 163 0 0 chr1 244900533 244900576 -37293088 + (CA)n Simple_repeat Simple_repeat 2 44 0 1405 201 25 33 chr1 244901062 244901425 -37292239 + MLT1C LTR MaLR 108 467 0 2113 138 3 3 chr1 244901756 244902060 -37291604 + AluSx SINE Alu 1 304 -8 231 114 0 0 chr1 244902078 244902113 -37291551 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 498 167 0 0 chr1 244902120 244902198 -37291466 - AluJ/FLAM SINE Alu -232 80 3 224 59 29 0 chr1 244902728 244902762 -37290902 + (CA)n Simple_repeat Simple_repeat 2 36 0 1638 197 7 0 chr1 244903185 244903479 -37290185 + AluJo SINE Alu 1 296 -16 249 225 11 34 chr1 244903675 244903764 -37289900 + MER112 DNA MER1_type 133 219 -41 995 196 29 0 chr1 244904179 244904352 -37289312 - FRAM SINE Alu -1 175 1 29 60 0 0 chr1 244904385 244904435 -37289229 + AT_rich Low_complexity Low_complexity 1 50 0 2229 107 0 7 chr1 244904672 244904971 -37288693 + AluSg SINE Alu 1 297 -13 24 0 0 0 chr1 244905316 244905340 -37288324 + AT_rich Low_complexity Low_complexity 1 24 0 1093 181 19 0 chr1 244905375 244905580 -37288084 + MER3 DNA MER1_type 1 209 0 180 0 0 0 chr1 244905662 244905682 -37287982 + (TA)n Simple_repeat Simple_repeat 2 21 0 817 168 64 17 chr1 244906222 244906395 -37287269 - MSTB1 LTR MaLR -242 190 10 254 303 68 62 chr1 244906820 244906982 -37286682 + L2 LINE L2 2807 2969 -303 982 242 90 79 chr1 244907018 244907498 -37286166 + MLT1K LTR MaLR 88 572 -16 193 279 63 0 chr1 244907514 244907593 -37286071 + L2 LINE L2 2970 3053 -219 2278 123 0 0 chr1 244907877 244908187 -37285477 + AluSx SINE Alu 1 310 -2 207 317 165 6 chr1 244908243 244908407 -37285257 - L2 LINE L2 -1487 1827 1638 2007 137 0 7 chr1 244909262 244909539 -37284125 + AluSx SINE Alu 1 275 -37 1336 257 164 8 chr1 244959644 244960115 -37233549 - L1ME3A LINE L1 -34 6136 5593 24 67 0 0 chr1 244960226 244960271 -37233393 + AT_rich Low_complexity Low_complexity 1 45 0 521 177 10 21 chr1 244960271 244960367 -37233297 - AluJo SINE Alu -98 214 120 343 258 96 27 chr1 244960367 244960530 -37233134 - L1ME3A LINE L1 -757 5389 5218 261 33 0 0 chr1 244960608 244960638 -37233026 - LTR24C LTR ERV1 -87 548 519 569 354 40 53 chr1 244961715 244962110 -37231554 - L2 LINE L2 -15 3257 2868 2270 127 3 0 chr1 244962690 244962997 -37230667 - AluSx SINE Alu -4 308 1 25 0 0 0 chr1 244963433 244963458 -37230206 + AT_rich Low_complexity Low_complexity 1 25 0 243 270 84 51 chr1 244963906 244964076 -37229588 - L2 LINE L2 -263 3009 2831 2677 30 0 0 chr1 244964076 244964375 -37229289 + AluY SINE Alu 1 299 -12 2000 125 3 23 chr1 244964501 244964805 -37228859 + AluJb SINE Alu 6 303 -9 376 267 122 0 chr1 244966102 244966239 -37227425 - MIR SINE MIR -6 256 101 615 204 62 0 chr1 244966615 244966728 -37226936 + FRAM SINE Alu 40 159 -17 189 269 30 0 chr1 244966733 244966800 -37226864 + L3b LINE CR1 1338 1406 -177 2445 53 0 0 chr1 244969209 244969493 -37224171 - AluY SINE Alu -18 293 10 967 184 53 39 chr1 244969804 244969858 -37223806 - MER3 DNA MER1_type 0 209 157 2106 117 3 0 chr1 244969858 244970190 -37223474 + AluSq SINE Alu 1 333 0 967 184 53 39 chr1 244970190 244970340 -37223324 - MER3 DNA MER1_type -52 157 1 181 226 0 0 chr1 244970401 244970432 -37223232 - MIR SINE MIR -143 119 89 763 239 120 10 chr1 244970961 244971170 -37222494 - MIR SINE MIR -26 236 5 1463 112 45 5 chr1 244971170 244971394 -37222270 - Tigger7 DNA MER2_type 0 2487 2255 2086 107 34 3 chr1 244971835 244972126 -37221538 + AluSx SINE Alu 1 300 -12 375 276 49 57 chr1 244972444 244972567 -37221097 - MIR3 SINE MIR -50 158 37 256 244 37 111 chr1 244972640 244972775 -37220889 + MER91B DNA MER1_type 1 125 -65 2152 70 46 7 chr1 244973918 244974203 -37219461 - AluY SINE Alu -15 296 1 748 280 96 8 chr1 244974687 244974926 -37218738 - MIR SINE MIR 0 262 3 555 184 125 26 chr1 244977143 244977295 -37216369 + MIR SINE MIR 68 234 -28 703 240 11 38 chr1 244977372 244977555 -37216109 + MER5B DNA MER1_type 1 178 0 1226 200 130 39 chr1 244977812 244978046 -37215618 - MLT1A2 LTR MaLR -8 366 92 2249 92 3 22 chr1 244978046 244978361 -37215303 + AluSg SINE Alu 1 309 -1 1226 200 130 39 chr1 244978361 244978456 -37215208 - MLT1A2 LTR MaLR -282 92 7 556 279 125 7 chr1 244978847 244979077 -37214587 + MIR SINE MIR 1 256 -6 2234 107 0 0 chr1 244979080 244979370 -37214294 + AluSq SINE Alu 1 290 -23 251 370 161 17 chr1 244979690 244980648 -37213016 - L2 LINE L2 -273 2999 1898 2106 111 4 0 chr1 244980649 244980952 -37212712 + AluSg SINE Alu 3 306 0 3207 128 26 24 chr1 244981591 244982082 -37211582 + LTR22B LTR ERVK 1 492 0 2028 134 23 0 chr1 244983152 244983451 -37210213 - AluSx SINE Alu -6 306 1 513 275 56 25 chr1 244983961 244984121 -37209543 - MLT1L LTR MaLR -17 598 434 248 341 47 8 chr1 244984803 244984932 -37208732 - L2 LINE L2 -2 3270 3137 12497 32 6 0 chr1 244985386 244987555 -37206109 - L1PA3 LINE L1 -3 6152 3974 423 301 98 30 chr1 244987644 244987847 -37205817 - MIR SINE MIR -18 244 28 403 206 31 52 chr1 244987977 244988074 -37205590 - L1MB5 LINE L1 -194 5980 5886 * 935 213 138 4 chr1 244988062 244988316 -37205348 - L1MB5 LINE L1 -1163 4983 4696 439 267 109 0 chr1 244988308 244988473 -37205191 - L1MB5 LINE L1 -2259 3887 3705 * 690 199 134 0 chr1 244988486 244988687 -37204977 - L1MB5 LINE L1 -2753 3393 3166 * 2305 215 62 31 chr1 244988676 244989245 -37204419 - L1ME1 LINE L1 -279 5956 5351 2312 104 0 0 chr1 244989245 244989544 -37204120 + AluSx SINE Alu 1 299 -13 2305 215 62 31 chr1 244989544 244989821 -37203843 - L1ME1 LINE L1 -884 5351 5084 403 246 93 0 chr1 244989847 244989965 -37203699 - L1ME1 LINE L1 -4309 2087 1959 1168 287 64 37 chr1 244990043 244990701 -37202963 - L1ME1 LINE L1 -4476 1802 1166 11758 176 80 15 chr1 244990813 244992744 -37200920 + L1PA13 LINE L1 1 2126 -4671 1819 151 7 7 chr1 244992744 244993023 -37200641 + AluSx SINE Alu 33 311 -1 11758 176 80 15 chr1 244993023 244993408 -37200256 + L1PA13 LINE L1 2126 2485 -4312 1396 92 11 0 chr1 244993409 244993594 -37200070 - AluSg/x SINE Alu -11 299 113 1145 119 6 0 chr1 244993694 244993854 -37199810 - AluSx SINE Alu -151 161 1 8231 194 39 14 chr1 244993854 244995664 -37198000 + L1PA13 LINE L1 2483 4336 -2461 309 295 0 0 chr1 244995691 244995786 -37197878 + G-rich Low_complexity Low_complexity 1 95 0 238 178 17 25 chr1 244995790 244995908 -37197756 + GA-rich Low_complexity Low_complexity 1 117 0 8603 164 28 5 chr1 244996033 244998347 -37195317 + L1PA13 LINE L1 4448 6813 -1 210 167 0 0 chr1 244999243 244999279 -37194385 + A-rich Low_complexity Low_complexity 6 41 0 2219 96 41 3 chr1 244999572 244999864 -37193800 + AluSx SINE Alu 1 303 -9 2417 75 7 3 chr1 245001514 245001819 -37191845 + AluY SINE Alu 1 306 -5 1386 156 19 55 chr1 245002055 245002234 -37191430 - AluJo SINE Alu 0 312 143 2399 68 7 3 chr1 245002234 245002529 -37191135 - AluY SINE Alu -15 296 1 1386 156 19 55 chr1 245002529 245002605 -37191059 - AluJo SINE Alu -169 143 66 690 253 177 6 chr1 245003080 245003425 -37190239 + L1ME3A LINE L1 5257 5660 -520 301 281 30 67 chr1 245003440 245003604 -37190060 - MER20B DNA MER1_type -625 158 1 805 210 161 5 chr1 245003618 245003804 -37189860 - MER20 DNA MER1_type -4 215 1 904 225 67 25 chr1 245003805 245004089 -37189575 + L1ME3A LINE L1 5650 5945 -225 2370 93 6 0 chr1 245004146 245004457 -37189207 + AluSq SINE Alu 1 313 0 228 224 0 0 chr1 245004575 245004624 -37189040 - AluJb SINE Alu -1 319 271 23 54 0 0 chr1 245004752 245004789 -37188875 + AT_rich Low_complexity Low_complexity 1 37 0 1123 203 69 106 chr1 245004803 245004853 -37188811 + MLT1E1 LTR MaLR 13 63 -591 1041 195 56 39 chr1 245004853 245005084 -37188580 + MER46A DNA MER2_type 1 235 -1 1123 203 69 106 chr1 245005084 245005479 -37188185 + MLT1E1 LTR MaLR 63 545 -109 1750 151 61 0 chr1 245005479 245005757 -37187907 - AluJb SINE Alu -17 295 1 1123 203 69 106 chr1 245005757 245005864 -37187800 + MLT1E1 LTR MaLR 545 654 0 22 0 0 0 chr1 245006153 245006175 -37187489 + AT_rich Low_complexity Low_complexity 1 22 0 333 248 112 40 chr1 245006360 245006485 -37187179 - MIR3 SINE MIR -62 146 13 297 0 0 0 chr1 245006789 245006822 -37186842 + (TA)n Simple_repeat Simple_repeat 1 33 0 356 265 15 22 chr1 245007433 245007569 -37186095 - L1M2 LINE L1 -869 5431 5297 645 202 113 6 chr1 245007598 245007766 -37185898 - L1M4 LINE L1 -1478 4668 4483 698 286 107 38 chr1 245007780 245007925 -37185739 - L1MEc LINE L1 -3928 2468 2334 1925 143 17 17 chr1 245007925 245008218 -37185446 - AluSx SINE Alu -17 295 3 698 286 107 38 chr1 245008218 245009332 -37184332 - L1MEc LINE L1 -4062 2334 1087 249 288 41 14 chr1 245009421 245009494 -37184170 - L1MEc LINE L1 -5449 756 682 2633 264 163 14 chr1 245009499 245010693 -37182971 - L2 LINE L2 -164 3149 1794 233 139 0 0 chr1 245010698 245010734 -37182930 + MER2 DNA MER2_type 6 41 -304 338 92 62 0 chr1 245010740 245010805 -37182859 + MER2 DNA MER2_type 142 210 -135 335 212 0 0 chr1 245010840 245010906 -37182758 + MER2 DNA MER2_type 280 345 0 2062 91 63 3 chr1 245010932 245011218 -37182446 + AluSp SINE Alu 1 303 -10 528 276 188 41 chr1 245011218 245011600 -37182064 - L2 LINE L2 -1535 1779 1341 2304 115 0 3 chr1 245012268 245012581 -37181083 - AluSx SINE Alu 0 312 1 350 220 106 28 chr1 245012780 245012797 -37180867 - L1MA10 LINE L1 -1 6333 6317 3391 194 121 10 chr1 245012797 245014131 -37179533 - L1ME1 LINE L1 -5 6161 4683 1070 227 0 32 chr1 245014141 245014361 -37179303 + AluJo SINE Alu 5 217 -95 663 167 25 129 chr1 245014362 245014509 -37179155 - L1ME1 LINE L1 -1463 4683 4522 2142 131 0 0 chr1 245014509 245014806 -37178858 - AluSx SINE Alu -15 297 1 663 167 25 129 chr1 245014806 245014852 -37178812 - L1ME1 LINE L1 -1624 4522 4517 1512 177 87 7 chr1 245014852 245015140 -37178524 - AluJb SINE Alu -1 311 1 663 167 25 129 chr1 245015140 245015185 -37178479 - L1ME1 LINE L1 -1629 4517 4469 956 104 0 0 chr1 245015199 245015343 -37178321 - L1PB1 LINE L1 0 6151 6008 24 0 0 0 chr1 245015353 245015377 -37178287 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr1 245015629 245015668 -37177996 + (TG)n Simple_repeat Simple_repeat 2 40 0 196 313 135 55 chr1 245016594 245016757 -37176907 - L2 LINE L2 -62 3210 3035 201 227 171 23 chr1 245016955 245017043 -37176621 + MIR SINE MIR 25 125 -83 1579 174 0 68 chr1 245017434 245017744 -37175920 - AluJo SINE Alu -22 290 2 437 303 142 5 chr1 245017786 245018006 -37175658 + MIR SINE MIR 4 247 -15 2336 97 3 0 chr1 245018044 245018344 -37175320 - AluSg SINE Alu -9 301 1 206 250 0 0 chr1 245018603 245018647 -37175017 + L3 LINE CR1 1531 1574 -3 181 71 36 0 chr1 245018772 245018800 -37174864 - MIR3 SINE MIR -22 186 158 233 29 0 29 chr1 245018851 245018886 -37174778 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 201 242 0 30 chr1 245019332 245019398 -37174266 + GA-rich Low_complexity Low_complexity 2 65 0 2046 105 20 20 chr1 245019402 245019697 -37173967 + AluSq SINE Alu 1 295 -18 626 239 90 11 chr1 245019757 245019945 -37173719 - MLT2E LTR ERVL 0 628 426 1138 106 2 16 chr1 245020412 245020727 -37172937 + (TTTC)n Simple_repeat Simple_repeat 1 490 0 293 299 49 89 chr1 245020747 245020971 -37172693 - MLT1K LTR MaLR -372 216 2 246 323 0 0 chr1 245021156 245021221 -37172443 - MIR SINE MIR -86 122 58 366 23 0 0 chr1 245021439 245021482 -37172182 + (TG)n Simple_repeat Simple_repeat 1 43 0 195 301 24 36 chr1 245021724 245021807 -37171857 + MER5B DNA MER1_type 1 82 -96 265 264 28 85 chr1 245021955 245022061 -37171603 - MIR SINE MIR -72 136 37 368 216 0 0 chr1 245022287 245022361 -37171303 + MIR3 SINE MIR 87 160 -48 2280 116 0 0 chr1 245022535 245022829 -37170835 + AluSc SINE Alu 1 294 -15 286 206 59 0 chr1 245023533 245023601 -37170063 + L2 LINE L2 3200 3271 -1 633 271 90 22 chr1 245023750 245024027 -37169637 - LTR16A LTR ERVL -10 440 145 230 269 269 0 chr1 245024146 245024224 -37169440 - MIR3 SINE MIR -51 157 59 501 284 25 19 chr1 245024328 245024490 -37169174 - MER5A DNA MER1_type 0 189 27 291 287 103 77 chr1 245024487 245024672 -37168992 + L3 LINE CR1 459 657 -920 * 2331 108 3 0 chr1 245024672 245024969 -37168695 + AluSq SINE Alu 1 298 -15 291 287 103 77 chr1 245024969 245025093 -37168571 + L3 LINE CR1 657 776 -801 637 242 171 52 chr1 245025188 245025399 -37168265 + MIR SINE MIR 5 240 -22 394 200 44 11 chr1 245025425 245025515 -37168149 - MLT1H1 LTR MaLR 0 555 463 716 244 117 9 chr1 245025580 245025866 -37167798 - MLT1H1 LTR MaLR -246 349 1 378 165 0 0 chr1 245025882 245025961 -37167703 + (TG)n Simple_repeat Simple_repeat 2 80 0 180 0 0 0 chr1 245025961 245025981 -37167683 + (GA)n Simple_repeat Simple_repeat 1 20 0 311 294 8 24 chr1 245025981 245026107 -37167557 + L1ME4a LINE L1 5950 6073 -48 646 309 98 67 chr1 245026128 245026616 -37167048 + L3 LINE CR1 901 1415 -162 2167 107 10 0 chr1 245026616 245026907 -37166757 + AluSq SINE Alu 1 294 -19 646 309 98 67 chr1 245026907 245027062 -37166602 + L3 LINE CR1 1415 1564 -13 237 340 72 21 chr1 245027087 245027184 -37166480 + L3b LINE CR1 1458 1559 -24 1370 113 41 0 chr1 245027657 245027851 -37165813 + AluSg SINE Alu 1 202 -108 21 0 0 0 chr1 245028187 245028208 -37165456 + AT_rich Low_complexity Low_complexity 1 21 0 329 280 131 79 chr1 245028227 245028556 -37165108 + L1ME3 LINE L1 5695 5947 -215 500 299 73 20 chr1 245030670 245030874 -37162790 + MIR SINE MIR 30 244 -18 282 380 66 26 chr1 245030987 245031213 -37162451 + L2 LINE L2 2847 3081 -232 1570 205 3 16 chr1 245031773 245032080 -37161584 - AluJb SINE Alu -9 303 1 24 32 0 0 chr1 245034379 245034410 -37159254 + AT_rich Low_complexity Low_complexity 1 31 0 278 271 21 71 chr1 245034590 245034730 -37158934 - MIR3 SINE MIR -3 205 73 255 241 108 0 chr1 245035033 245035116 -37158548 + MER94 DNA DNA 39 130 -4 1631 149 54 63 chr1 245035176 245035491 -37158173 - AluJo SINE Alu 0 312 1 423 230 111 64 chr1 245035677 245035912 -37157752 - L1ME4a LINE L1 -31 6090 5845 30 0 0 0 chr1 245035926 245035956 -37157708 + AT_rich Low_complexity Low_complexity 1 30 0 824 245 110 49 chr1 245036138 245036648 -37157016 - L1MC4a LINE L1 -1907 5901 5361 28 29 0 0 chr1 245036780 245036815 -37156849 + AT_rich Low_complexity Low_complexity 1 35 0 319 342 18 9 chr1 245036994 245037105 -37156559 + MIR SINE MIR 28 139 -123 480 278 92 21 chr1 245037457 245037770 -37155894 + MLT1H LTR MaLR 240 547 -2 356 297 62 29 chr1 245038053 245038262 -37155402 - LTR67 LTR ERVL -333 224 9 1952 168 0 0 chr1 245038357 245038667 -37154997 + AluSx SINE Alu 3 312 0 1947 159 3 0 chr1 245039481 245039783 -37153881 + AluJb SINE Alu 1 303 -9 1094 150 83 12 chr1 245039810 245040063 -37153601 + L1MC3 LINE L1 7494 7764 -21 2365 94 0 0 chr1 245040880 245041179 -37152485 + AluSx SINE Alu 1 299 -13 532 291 158 42 chr1 245041188 245041835 -37151829 + L1MC4a LINE L1 5320 6041 -1767 409 260 20 0 chr1 245042639 245042739 -37150925 + MIR SINE MIR 56 157 -105 31 26 0 0 chr1 245043687 245043725 -37149939 + AT_rich Low_complexity Low_complexity 1 38 0 1207 191 4 22 chr1 245043860 245044085 -37149579 + AluJo SINE Alu 87 307 -5 2353 100 0 0 chr1 245044774 245045075 -37148589 + AluSx SINE Alu 1 301 -11 195 267 0 0 chr1 245045451 245045526 -37148138 + GA-rich Low_complexity Low_complexity 3 77 0 2042 131 0 32 chr1 245045795 245046107 -37147557 - AluSx SINE Alu -8 304 3 217 250 11 33 chr1 245046127 245046219 -37147445 + A-rich Low_complexity Low_complexity 2 91 0 24 0 0 0 chr1 245046319 245046343 -37147321 + AT_rich Low_complexity Low_complexity 1 24 0 1599 199 46 11 chr1 245047022 245047373 -37146291 + MLT1A1 LTR MaLR 1 363 -2 2078 140 3 0 chr1 245047517 245047825 -37145839 + AluSq SINE Alu 1 309 -4 345 198 69 0 chr1 245048012 245048113 -37145551 + L1M4 LINE L1 4363 4470 -1676 1183 207 9 5 chr1 245048120 245048342 -37145322 + AluJo SINE Alu 1 223 -89 660 215 68 124 chr1 245048443 245048782 -37144882 + L2 LINE L2 2380 2699 -615 250 265 39 10 chr1 245048984 245049086 -37144578 - L1ME3 LINE L1 -1 6161 6057 491 248 92 0 chr1 245049105 245049246 -37144418 + LTR33 LTR ERVL 67 220 -301 411 235 0 20 chr1 245049391 245049493 -37144171 + LTR33 LTR ERVL 422 521 0 335 237 187 14 chr1 245049766 245049905 -37143759 + MIR SINE MIR 1 163 -99 200 358 62 12 chr1 245049907 245049988 -37143676 + MER91C DNA MER1_type 25 109 -31 320 266 0 0 chr1 245050141 245050220 -37143444 - L2 LINE L2 -508 2806 2728 644 280 20 113 chr1 245050247 245050278 -37143386 + L2 LINE L2 2951 2983 -330 1235 175 26 111 chr1 245050278 245050656 -37143008 + MER7A DNA MER2_type 2 345 -1 644 280 20 113 chr1 245050656 245051021 -37142643 + L2 LINE L2 2983 3310 -3 269 341 68 0 chr1 245051464 245051552 -37142112 + L2 LINE L2 3173 3266 -6 25 31 0 0 chr1 245051652 245051684 -37141980 + AT_rich Low_complexity Low_complexity 1 32 0 379 279 101 58 chr1 245051686 245051944 -37141720 + MER102a DNA MER1_type 62 330 0 841 173 0 8 chr1 245052211 245052344 -37141320 + FRAM SINE Alu 1 132 -44 515 224 9 0 chr1 245052780 245052887 -37140777 + Tigger3(Golem) DNA MER2_type 1 108 -2921 265 96 39 39 chr1 245052887 245052939 -37140725 + Tigger3(Golem) DNA MER2_type 2284 2335 -694 734 153 0 0 chr1 245052947 245053058 -37140606 - FLAM_C SINE Alu -32 111 1 3827 113 45 0 chr1 245053064 245053692 -37139972 + Tigger3(Golem) DNA MER2_type 2373 3028 -1 29 0 0 25 chr1 245053877 245053900 -37139764 + AT_rich Low_complexity Low_complexity 1 24 -15 8093 72 153 5 chr1 245053900 245055087 -37138577 + SVA Other Other 24 1386 0 29 0 0 25 chr1 245055087 245055103 -37138561 + AT_rich Low_complexity Low_complexity 24 39 0 642 225 133 61 chr1 245055196 245055654 -37138010 - L1ME4a LINE L1 -70 6051 5561 355 333 67 18 chr1 245057401 245057566 -37136098 - L1M4c LINE L1 -4648 1736 1584 320 223 82 98 chr1 245057850 245058034 -37135630 - L1ME4a LINE L1 -1 6120 5940 1063 143 0 0 chr1 245058424 245058578 -37135086 + AluSg/x SINE Alu 129 282 -30 186 71 0 0 chr1 245058578 245058606 -37135058 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 25 0 0 0 chr1 245060083 245060108 -37133556 + AT_rich Low_complexity Low_complexity 1 25 0 513 183 9 17 chr1 245060777 245060892 -37132772 + L1ME1 LINE L1 2726 2839 -3307 1369 229 0 14 chr1 245060899 245061183 -37132481 + AluJb SINE Alu 11 290 -22 612 222 130 0 chr1 245061202 245061364 -37132300 + L1ME1 LINE L1 2879 3061 -3085 * 1988 214 53 12 chr1 245061359 245062066 -37131598 + L1ME1 LINE L1 4858 5589 -577 6200 138 34 63 chr1 245062070 245063905 -37129759 - L1PA16 LINE L1 -1 6165 4400 1420 164 40 11 chr1 245063905 245064179 -37129485 + L1ME1 LINE L1 5575 5856 -310 1363 175 126 29 chr1 245064603 245064916 -37128748 + L1ME1 LINE L1 5823 6161 -5 24 0 0 0 chr1 245064920 245064944 -37128720 + AT_rich Low_complexity Low_complexity 1 24 0 2022 118 37 0 chr1 245065323 245065620 -37128044 + AluSx SINE Alu 1 308 -4 310 308 60 17 chr1 245067132 245067249 -37126415 + MER5B DNA MER1_type 2 123 -55 2165 116 7 0 chr1 245067283 245067576 -37126088 - AluSx SINE Alu -17 295 1 325 267 99 15 chr1 245067671 245067802 -37125862 + Charlie8 DNA MER1_type 28 169 -2248 916 244 57 13 chr1 245068184 245068413 -37125251 - MIR SINE MIR -17 245 7 947 254 148 53 chr1 245068606 245069113 -37124551 - LTR67 LTR ERVL -1 556 2 2201 100 3 13 chr1 245069736 245070037 -37123627 - AluSq SINE Alu -15 298 1 238 232 125 18 chr1 245070122 245070178 -37123486 - MLT1K LTR MaLR -347 241 180 509 91 0 0 chr1 245070919 245070985 -37122679 - Alu SINE Alu -243 66 1 367 292 56 48 chr1 245071038 245071311 -37122353 + L2 LINE L2 2907 3255 -58 2457 57 3 3 chr1 245072006 245072307 -37121357 + AluSq SINE Alu 1 301 -12 319 318 23 16 chr1 245075298 245075427 -37118237 + MIR SINE MIR 1 130 -132 307 296 164 39 chr1 245075539 245075674 -37117990 + L2 LINE L2 2097 2214 -1100 5137 161 35 4 chr1 245075674 245076512 -37117152 - MER6 DNA MER2_type -1 864 1 307 296 164 39 chr1 245076512 245076761 -37116903 + L2 LINE L2 2214 2529 -785 2258 194 74 19 chr1 245076937 245077520 -37116144 - Charlie2 DNA MER1_type -30 2832 2218 407 245 76 76 chr1 245077589 245077772 -37115892 - Charlie2 DNA MER1_type -2565 297 115 3707 141 60 9 chr1 245077772 245078439 -37115225 - Tigger3(Golem) DNA MER2_type -1 3028 2328 567 209 0 29 chr1 245078427 245078532 -37115132 - Tigger3(Golem) DNA MER2_type -2927 102 1 * 301 265 0 41 chr1 245078527 245078549 -37115115 - Charlie2 DNA MER1_type -2740 122 101 * 2781 190 132 27 chr1 245078549 245079187 -37114477 - MER44D DNA MER2_type 0 705 1 301 265 0 41 chr1 245079187 245079262 -37114402 - Charlie2 DNA MER1_type -2761 101 29 2065 74 3 21 chr1 245079732 245080016 -37113648 - AluY SINE Alu -32 279 1 21 0 0 0 chr1 245080365 245080386 -37113278 + AT_rich Low_complexity Low_complexity 1 21 0 1285 197 20 67 chr1 245081700 245081756 -37111908 + AluSx SINE Alu 2 59 -243 2000 137 13 3 chr1 245081756 245082056 -37111608 + AluSx SINE Alu 3 305 -7 1285 197 20 67 chr1 245082056 245082299 -37111365 + AluSx SINE Alu 59 287 -15 2210 109 7 0 chr1 245082528 245082822 -37110842 + AluSx SINE Alu 1 296 -16 4487 69 5 2 chr1 245082978 245083546 -37110118 - L1PA10 LINE L1 -211 5957 5388 2136 102 7 10 chr1 245084031 245084325 -37109339 - AluSx SINE Alu -19 293 1 1777 125 18 14 chr1 245084672 245084979 -37108685 - AluSg1 SINE Alu 0 308 1 2215 119 0 0 chr1 245085391 245085711 -37107953 - AluSx SINE Alu 0 320 1 272 298 24 0 chr1 245086148 245086232 -37107432 - MER91A DNA MER1_type -109 87 2 1556 174 41 4 chr1 245086397 245086667 -37106997 + AluJo SINE Alu 11 290 -22 21 36 0 0 chr1 245086936 245086964 -37106700 + AT_rich Low_complexity Low_complexity 1 28 0 440 172 43 21 chr1 245087024 245087117 -37106547 + MER5B DNA MER1_type 83 177 -1 197 316 141 61 chr1 245087455 245087718 -37105946 + L2 LINE L2 2007 2290 -1024 514 214 104 0 chr1 245087789 245087943 -37105721 - L1MDa LINE L1 -4511 2029 1860 234 0 0 0 chr1 245087943 245087969 -37105695 + (T)n Simple_repeat Simple_repeat 1 26 0 596 261 144 20 chr1 245088534 245088833 -37104831 - L1MDa LINE L1 -4643 1897 1562 2126 109 0 26 chr1 245088840 245089142 -37104522 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr1 245089258 245089294 -37104370 + GC_rich Low_complexity Low_complexity 1 36 0 274 209 11 53 chr1 245089294 245089481 -37104183 + G-rich Low_complexity Low_complexity 1 179 0 629 149 24 164 chr1 245089595 245089650 -37104014 - MLT1B LTR MaLR -66 324 263 2198 99 10 0 chr1 245089650 245089943 -37103721 + AluSq SINE Alu 1 296 -17 629 149 24 164 chr1 245089943 245090095 -37103569 - MLT1B LTR MaLR -127 263 146 5417 120 92 46 chr1 245090109 245091459 -37102205 + pTR5 LTR ERV1 743 2438 0 726 159 20 53 chr1 245091462 245091613 -37102051 - MLT1B LTR MaLR -244 146 1 1548 209 18 3 chr1 245091823 245092106 -37101558 - AluJo SINE Alu -25 287 1 1877 135 22 51 chr1 245092851 245093163 -37100501 - AluJb SINE Alu -9 303 1 189 200 0 0 chr1 245094698 245094733 -37098931 + MIR SINE MIR 159 193 -69 225 0 0 0 chr1 245094785 245094810 -37098854 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 132 0 0 chr1 245094883 245094921 -37098743 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 829 171 0 21 chr1 245095050 245095190 -37098474 - FLAM_C SINE Alu -5 138 2 973 140 0 0 chr1 245095214 245095350 -37098314 - FRAM SINE Alu -30 146 11 346 224 19 47 chr1 245096114 245096221 -37097443 + CT-rich Low_complexity Low_complexity 2 105 0 682 257 57 6 chr1 245096778 245096953 -37096711 + MIR SINE MIR 20 203 -59 395 219 154 0 chr1 245097070 245097193 -37096471 + L1MC5 LINE L1 7720 7861 -100 470 138 172 0 chr1 245097290 245097377 -37096287 - MER2 DNA MER2_type -10 335 234 632 198 0 9 chr1 245097377 245097510 -37096154 - FLAM_A SINE Alu 0 151 20 1646 88 44 0 chr1 245097518 245097746 -37095918 - MER2 DNA MER2_type -105 240 3 5525 160 55 21 chr1 245097750 245098372 -37095292 + Tigger6a DNA MER2_type 1 674 -923 1082 35 21 35 chr1 245098372 245098513 -37095151 + MER85 DNA T2_type 1 139 0 5525 160 55 21 chr1 245098513 245098936 -37094728 + Tigger6a DNA MER2_type 674 1081 -2 2590 51 0 0 chr1 245099005 245099301 -37094363 - AluY SINE Alu -15 296 1 510 284 25 6 chr1 245099321 245099483 -37094181 + MIR SINE MIR 98 262 0 711 211 31 19 chr1 245099714 245099875 -37093789 - MER106B DNA MER1_type 0 1059 897 2269 113 13 0 chr1 245100058 245100360 -37093304 - AluSq SINE Alu -7 306 1 366 278 11 11 chr1 245100413 245100503 -37093161 + MLT1L LTR MaLR 150 239 -376 252 0 0 0 chr1 245100519 245100547 -37093117 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1318 149 4 46 chr1 245100574 245100815 -37092849 + AluJb SINE Alu 1 231 -81 562 242 90 99 chr1 245100845 245101061 -37092603 + MLT1L LTR MaLR 288 502 -113 2075 134 3 0 chr1 245101061 245101359 -37092305 - AluSx SINE Alu -2 310 12 562 242 90 99 chr1 245101359 245101464 -37092200 + MLT1L LTR MaLR 502 606 -9 457 299 121 10 chr1 245101640 245101847 -37091817 + MIR SINE MIR 27 256 -6 2982 225 60 47 chr1 245101992 245102824 -37090840 + MER52A LTR ERV1 100 942 -813 207 0 0 0 chr1 245102929 245102952 -37090712 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1192 249 44 87 chr1 245102953 245103008 -37090656 - L1ME LINE L1 -5246 824 768 1496 134 9 0 chr1 245103008 245103232 -37090432 - AluJb SINE Alu 0 312 87 1192 249 44 87 chr1 245103232 245103835 -37089829 - L1ME LINE L1 -5302 768 194 2276 99 7 3 chr1 245103944 245104246 -37089418 + AluSx SINE Alu 1 303 -9 13961 183 48 45 chr1 245104426 245108651 -37085013 + L1M2 LINE L1 7 4245 -2603 1092 121 0 24 chr1 245158652 245158817 -37034847 + AluSq SINE Alu 140 300 -13 203 193 0 70 chr1 245158994 245159051 -37034613 - L2 LINE L2 0 3272 3220 205 146 18 55 chr1 245159061 245159116 -37034548 + A-rich Low_complexity Low_complexity 3 55 0 1833 134 17 10 chr1 245159236 245159527 -37034137 + AluSg SINE Alu 1 293 -17 237 175 48 32 chr1 245159591 245159654 -37034010 + LTR16A1 LTR ERVL 363 426 -31 2124 141 51 25 chr1 245159794 245160148 -37033516 - THE1B LTR MaLR -1 363 1 1205 230 123 3 chr1 245160148 245160505 -37033159 - L2 LINE L2 -2304 1010 611 350 273 86 0 chr1 245160567 245160706 -37032958 + L2 LINE L2 1186 1336 -1978 2703 155 50 47 chr1 245161025 245161606 -37032058 - L1MB7 LINE L1 -15 6169 5587 1490 143 0 35 chr1 245162088 245162346 -37031318 + AluSx SINE Alu 47 295 -17 624 120 19 74 chr1 245162803 245162911 -37030753 - FRAM SINE Alu -21 155 54 820 174 0 0 chr1 245162950 245163082 -37030582 + AluSq/x SINE Alu 2 133 -180 38 61 0 0 chr1 245163205 245163271 -37030393 + AT_rich Low_complexity Low_complexity 1 66 0 305 205 113 176 chr1 245164638 245164966 -37028698 - MLT1H LTR MaLR -27 522 227 2085 125 7 10 chr1 245165060 245165365 -37028299 + AluSq SINE Alu 1 304 -9 1444 182 19 0 chr1 245165566 245165830 -37027834 + AluSp SINE Alu 2 270 -43 1229 159 15 0 chr1 245166038 245166239 -37027425 + AluJo SINE Alu 1 204 -108 2092 255 73 30 chr1 245166470 245167274 -37026390 + L1MC4a LINE L1 4507 5345 -801 2377 84 3 3 chr1 245167432 245167729 -37025935 + AluY SINE Alu 1 297 -14 1859 213 27 8 chr1 245167730 245168097 -37025567 - MLT1A2 LTR MaLR 0 374 1 349 286 0 24 chr1 245168325 245168451 -37025213 - MLT1H LTR MaLR -374 175 53 815 303 53 26 chr1 245168608 245169060 -37024604 + L1MC4a LINE L1 5413 5876 -1932 252 230 115 23 chr1 245169170 245169257 -37024407 + MLT1L LTR MaLR 4 98 -517 1303 168 56 39 chr1 245169435 245169721 -37023943 - MSTC LTR MaLR -137 291 1 22 0 0 0 chr1 245170959 245170981 -37022683 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr1 245171042 245171063 -37022601 + (A)n Simple_repeat Simple_repeat 1 21 0 2112 136 0 0 chr1 245171063 245171365 -37022299 + AluSx SINE Alu 1 302 -10 252 150 30 17 chr1 245171444 245171520 -37022144 + L1MB2 LINE L1 6087 6153 -18 915 229 101 33 chr1 245171967 245172303 -37021361 - L1ME3 LINE L1 -210 5952 5594 525 226 137 20 chr1 245172625 245172771 -37020893 + MIR SINE MIR 11 173 -89 412 123 0 0 chr1 245172977 245173034 -37020630 + MER30 DNA MER1_type 174 230 0 2151 121 3 0 chr1 245173179 245173485 -37020179 + AluSg SINE Alu 1 307 -3 1830 143 3 51 chr1 245173496 245173629 -37020035 + AluSx SINE Alu 1 139 -173 369 0 0 0 chr1 245173629 245173670 -37019994 + (TA)n Simple_repeat Simple_repeat 2 42 0 1830 143 3 51 chr1 245173670 245173851 -37019813 + AluSx SINE Alu 139 300 -12 386 233 69 17 chr1 245173947 245174063 -37019601 - L1ME LINE L1 -448 5673 5552 345 208 161 157 chr1 245174171 245174294 -37019370 - MIR SINE MIR 0 262 136 2130 127 7 0 chr1 245174294 245174593 -37019071 + AluSx SINE Alu 1 301 -11 345 208 161 157 chr1 245174593 245174705 -37018959 - MIR SINE MIR -126 136 26 2456 74 0 3 chr1 245174999 245175298 -37018366 + AluSg SINE Alu 3 300 -10 616 244 36 42 chr1 245175437 245175605 -37018059 + MIR SINE MIR 57 223 -39 326 210 49 0 chr1 245176366 245176447 -37017217 - MSTA-int LTR MaLR -1493 87 3 1772 211 63 10 chr1 245176462 245176856 -37016808 - MSTA LTR MaLR -13 415 1 625 234 7 0 chr1 245176907 245177044 -37016620 - L1MC3 LINE L1 -626 7159 7022 433 143 0 0 chr1 245177048 245177111 -37016553 - L1MC1 LINE L1 -3 6330 6268 6057 122 27 40 chr1 245177112 245178146 -37015518 + L1MA9 LINE L1 5292 6312 0 5081 181 44 8 chr1 245178191 245179461 -37014203 - L1MC1 LINE L1 -100 6233 4918 2311 99 3 0 chr1 245179721 245180015 -37013649 - AluSp SINE Alu -16 297 3 378 211 37 28 chr1 245180383 245180492 -37013172 - MER115 DNA AcHobo -13 680 571 752 215 16 26 chr1 245180663 245180854 -37012810 - SVA Other Other -744 642 454 2004 102 36 0 chr1 245182481 245182778 -37010886 + AluSp SINE Alu 1 307 0 189 273 25 91 chr1 245182778 245182899 -37010765 - MIR SINE MIR -80 128 16 1947 134 7 4 chr1 245183274 245183550 -37010114 + AluSx SINE Alu 1 277 -35 338 272 29 87 chr1 245183852 245184025 -37009639 - MIR3 SINE MIR 0 208 46 220 295 33 0 chr1 245184180 245184241 -37009423 - L2 LINE L2 0 3272 3210 2257 105 0 23 chr1 245184289 245184593 -37009071 + AluSx SINE Alu 1 297 -15 838 176 9 126 chr1 245185027 245185193 -37008471 - AluJo SINE Alu 0 311 179 2030 141 6 16 chr1 245185193 245185327 -37008337 + AluSx SINE Alu 1 135 -177 2175 124 0 16 chr1 245185327 245185634 -37008030 + AluSx SINE Alu 1 302 -10 2030 141 6 16 chr1 245185634 245185812 -37007852 + AluSx SINE Alu 135 310 -2 838 176 9 126 chr1 245185812 245185894 -37007770 - AluJo SINE Alu -132 179 89 490 162 0 91 chr1 245185895 245185994 -37007670 - AluJo SINE Alu -163 149 60 1692 152 3 52 chr1 245186185 245186361 -37007303 - AluSx SINE Alu -17 295 139 369 0 0 0 chr1 245186361 245186402 -37007262 + (TA)n Simple_repeat Simple_repeat 1 41 0 1692 152 3 52 chr1 245186402 245186535 -37007129 - AluSx SINE Alu -173 139 1 2445 88 3 0 chr1 245186546 245186852 -37006812 - AluSg SINE Alu -3 307 1 400 257 126 45 chr1 245186860 245186997 -37006667 - L1ME4a LINE L1 -3 6118 5994 1618 90 85 0 chr1 245186997 245187209 -37006455 - MER30 DNA MER1_type 0 230 1 400 257 126 45 chr1 245187209 245187227 -37006437 - L1ME4a LINE L1 -127 5994 5979 2243 102 0 10 chr1 245187227 245187520 -37006144 - AluSx SINE Alu -22 290 1 400 257 126 45 chr1 245187520 245187585 -37006079 - L1ME4a LINE L1 -142 5979 5879 534 228 25 106 chr1 245187758 245187995 -37005669 + MER41E LTR ERV1 54 271 -241 2382 84 0 22 chr1 245188037 245188348 -37005316 + AluY SINE Alu 1 304 -7 183 42 0 0 chr1 245188350 245188374 -37005290 + (TA)n Simple_repeat Simple_repeat 1 24 0 612 154 29 0 chr1 245189326 245189430 -37004234 + MER5A DNA MER1_type 2 108 -81 735 342 87 51 chr1 245189480 245189901 -37003763 + L2 LINE L2 2165 2569 -703 3081 74 0 0 chr1 245189901 245190265 -37003399 + THE1B LTR MaLR 1 364 0 735 342 87 51 chr1 245190265 245190882 -37002782 + L2 LINE L2 2569 3263 -9 206 315 144 44 chr1 245190899 245191169 -37002495 + L2 LINE L2 1777 2073 -1241 452 186 171 116 chr1 245191242 245191441 -37002223 + MER63A DNA MER1_type 1 210 0 190 329 55 91 chr1 245191484 245191703 -37001961 - L2 LINE L2 -116 3156 2946 183 245 0 160 chr1 245191747 245191853 -37001811 + MIR3 SINE MIR 5 93 -115 631 245 81 105 chr1 245192406 245192942 -37000722 - L1ME3A LINE L1 -20 6150 5618 2214 75 47 0 chr1 245193162 245193441 -37000223 - AluY SINE Alu -19 292 1 221 263 88 15 chr1 245193891 245193993 -36999671 - MIR SINE MIR -44 164 57 260 263 12 25 chr1 245194490 245194570 -36999094 + MIR SINE MIR 154 232 -30 2366 68 10 3 chr1 245196998 245197294 -36996370 - AluSq SINE Alu -15 298 1 212 167 0 0 chr1 245197729 245197765 -36995899 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1825 133 42 11 chr1 245197788 245198073 -36995591 + AluJb SINE Alu 1 294 -18 2547 62 0 7 chr1 245200211 245200515 -36993149 - AluY SINE Alu -9 302 1 21 0 0 0 chr1 245201497 245201518 -36992146 + AT_rich Low_complexity Low_complexity 1 21 0 38 61 0 0 chr1 245201654 245201720 -36991944 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chr1 245202958 245202987 -36990677 + AT_rich Low_complexity Low_complexity 1 29 0 3026 139 50 47 chr1 245203155 245203736 -36989928 - L1MB7 LINE L1 -15 6169 5587 298 253 153 33 chr1 245206980 245207171 -36986493 + MIR SINE MIR 32 253 -9 298 261 230 6 chr1 245208531 245208696 -36984968 + MIR SINE MIR 48 249 -13 5373 262 122 20 chr1 245209931 245212034 -36981630 - L2 LINE L2 -4 3309 930 2359 123 51 20 chr1 245212034 245212385 -36981279 - THE1B LTR MaLR -2 362 1 5373 262 122 20 chr1 245212385 245212742 -36980922 - L2 LINE L2 -2383 930 611 484 237 86 0 chr1 245212804 245212943 -36980721 + L2 LINE L2 1186 1336 -1978 2227 91 57 3 chr1 245213173 245213469 -36980195 - AluSx SINE Alu 0 312 1 733 265 70 22 chr1 245213499 245213812 -36979852 - HAL1 LINE L1 -29 2478 2151 1764 189 15 24 chr1 245213831 245214169 -36979495 + MER2 DNA MER2_type 1 335 -10 3584 190 43 12 chr1 245214252 245215244 -36978420 - L1MB7 LINE L1 -653 5531 4502 1353 129 15 0 chr1 245215470 245215671 -36977993 - AluJo SINE Alu -108 204 1 423 287 23 47 chr1 245216098 245216227 -36977437 - MIR SINE MIR -135 127 2 2406 60 3 10 chr1 245216251 245216549 -36977115 + AluY SINE Alu 1 296 -15 321 311 59 0 chr1 245218141 245218260 -36975404 - MIR SINE MIR -112 150 25 4303 115 54 1 chr1 245218429 245219216 -36974448 + L1MA7 LINE L1 5310 6266 -25 12592 166 21 28 chr1 245219286 245219562 -36974102 - L1PB1 LINE L1 -7 6860 6584 2122 105 17 20 chr1 245219562 245219857 -36973807 + AluSx SINE Alu 1 294 -18 12592 166 21 28 chr1 245219857 245220426 -36973238 - L1PB1 LINE L1 -283 6584 6012 4389 105 61 88 chr1 245220426 245221233 -36972431 - LTR1 LTR ERV1 0 785 1 12592 166 21 28 chr1 245221233 245222667 -36970997 - L1PB1 LINE L1 -855 6012 4610 1958 97 86 0 chr1 245222667 245222946 -36970718 - AluSq SINE Alu -10 303 1 12592 166 21 28 chr1 245222946 245224254 -36969410 - L1PB1 LINE L1 -2257 4610 3294 14165 98 105 74 chr1 245224272 245226526 -36967138 - L1PB1 LINE L1 -4173 2690 508 2095 113 7 3 chr1 245226526 245226844 -36966820 - AluSx SINE Alu 0 319 1 14165 98 105 74 chr1 245226844 245226866 -36966798 - L1PB1 LINE L1 -6355 508 488 535 110 0 0 chr1 245226866 245226939 -36966725 - 7SK RNA RNA 0 193 121 14165 98 105 74 chr1 245226939 245227196 -36966468 - L1PB1 LINE L1 -6375 488 1 442 149 14 0 chr1 245228579 245228653 -36965011 + MER53 DNA DNA 115 189 0 634 200 226 11 chr1 245234851 245234985 -36958679 + MIR SINE MIR 5 109 -153 2265 101 0 3 chr1 245234985 245235282 -36958382 + AluSc SINE Alu 1 296 -13 634 200 226 11 chr1 245235282 245235337 -36958327 + MIR SINE MIR 109 235 -27 528 236 127 25 chr1 245237559 245237716 -36955948 - MIR SINE MIR -89 173 1 906 217 110 42 chr1 245238028 245238364 -36955300 + L1ME3 LINE L1 5594 5952 -210 1282 71 0 0 chr1 245238577 245238732 -36954932 + AluSp SINE Alu 147 301 -12 1021 179 12 17 chr1 245238734 245238907 -36954757 + AluSg/x SINE Alu 134 305 -7 318 253 23 23 chr1 245238907 245238994 -36954670 - AluJo SINE Alu -127 175 89 798 159 0 92 chr1 245238995 245239108 -36954556 - AluJo SINE Alu -163 149 54 3474 78 0 37 chr1 245239108 245239216 -36954448 + MLT2A1 LTR ERVL 1 111 -333 2494 70 0 0 chr1 245239216 245239516 -36954148 + AluYa5 SINE Alu 1 300 -11 3474 78 0 37 chr1 245239516 245239868 -36953796 + MLT2A1 LTR ERVL 111 444 0 798 159 0 92 chr1 245239868 245239917 -36953747 - AluJo SINE Alu -258 54 2 866 245 49 0 chr1 245240200 245240404 -36953260 - MIR SINE MIR -15 247 34 227 229 301 12 chr1 245240593 245240676 -36952988 + L2 LINE L2 3154 3260 -12 284 171 118 66 chr1 245240713 245240789 -36952875 - MIR3 SINE MIR -12 196 117 198 239 68 86 chr1 245240956 245241007 -36952657 - MIR3 SINE MIR -1 207 157 2489 55 0 13 chr1 245241007 245241315 -36952349 + AluY SINE Alu 1 304 -7 198 239 68 86 chr1 245241315 245241380 -36952284 - MIR3 SINE MIR -51 157 93 2443 54 3 3 chr1 245241760 245242057 -36951607 - AluY SINE Alu -14 297 1 2303 82 3 16 chr1 245242694 245242999 -36950665 - AluSp SINE Alu -12 301 1 2172 129 3 3 chr1 245243008 245243317 -36950347 - AluSx SINE Alu -3 309 1 1062 292 136 50 chr1 245243337 245244206 -36949458 + L2 LINE L2 1182 2125 -1189 1589 146 23 63 chr1 245244290 245244592 -36949072 + AluJo SINE Alu 2 291 -21 290 282 77 19 chr1 245244640 245244780 -36948884 - L1P3 LINE L1 -355 5817 5666 1565 259 26 16 chr1 245245337 245245765 -36947899 + L2 LINE L2 2089 2520 -794 2113 123 0 0 chr1 245245765 245246081 -36947583 - AluSx SINE Alu 0 316 1 1084 260 73 57 chr1 245246097 245246628 -36947036 + L1MEc LINE L1 26 565 -5831 423 253 56 5 chr1 245246628 245246819 -36946845 + MLT1G LTR MaLR 1 195 -354 802 259 119 14 chr1 245246835 245247179 -36946485 + HERVL LTR ERVL 3558 3937 -1717 522 356 11 0 chr1 245247315 245247495 -36946169 + HERVL LTR ERVL 4215 4396 -1368 3904 157 45 17 chr1 245247512 245247585 -36946079 + L1MD2 LINE L1 4984 5053 -1306 2141 134 0 10 chr1 245247585 245247892 -36945772 + AluSx SINE Alu 1 304 -8 3904 157 45 17 chr1 245247892 245248733 -36944931 + L1MD2 LINE L1 5053 5919 -440 281 130 0 3 chr1 245248770 245248993 -36944671 + AluSg SINE Alu 1 291 -10 4972 110 16 30 chr1 245248993 245249089 -36944575 + L1PA13 LINE L1 5393 5489 -674 2342 101 7 0 chr1 245249089 245249396 -36944268 + AluSp SINE Alu 1 309 -4 4972 110 16 30 chr1 245249396 245250070 -36943594 + L1PA13 LINE L1 5489 6152 -11 2528 138 48 7 chr1 245250079 245250500 -36943164 + L1MD2 LINE L1 5920 6357 -2 515 344 70 0 chr1 245250529 245250756 -36942908 + HERVL LTR ERVL 4376 4618 -867 7025 110 17 48 chr1 245250760 245251522 -36942142 + L1MA3 LINE L1 4255 5039 -1266 2140 105 10 13 chr1 245251522 245251827 -36941837 + AluSx SINE Alu 1 304 -8 7025 110 17 48 chr1 245251827 245251996 -36941668 + L1MA3 LINE L1 5039 5212 -1093 905 173 0 0 chr1 245251996 245252129 -36941535 + FLAM_C SINE Alu 1 133 0 7025 110 17 48 chr1 245252129 245253321 -36940343 + L1MA3 LINE L1 5212 6305 0 1027 336 48 47 chr1 245253332 245254063 -36939601 + HERVL LTR ERVL 4645 5376 -388 532 320 20 24 chr1 245254212 245254462 -36939202 + LTR16A1 LTR ERVL 1 249 -208 2362 237 64 23 chr1 245254462 245255189 -36938475 + L2 LINE L2 2322 3102 -211 2286 94 7 3 chr1 245255189 245255486 -36938178 - AluSx SINE Alu -14 298 1 2362 237 64 23 chr1 245255486 245255702 -36937962 + L2 LINE L2 3102 3308 -5 818 180 84 116 chr1 245255999 245256283 -36937381 - ORSL DNA AcHobo 0 275 1 284 354 21 0 chr1 245256407 245256503 -36937161 - MIR SINE MIR -118 144 47 180 241 37 0 chr1 245257259 245257313 -36936351 + MIR SINE MIR 203 258 -4 375 370 56 12 chr1 245257384 245257546 -36936118 - L2 LINE L2 0 3272 3104 432 226 134 94 chr1 245258270 245258620 -36935044 - MLT1H1 LTR MaLR -5 550 187 2327 103 7 0 chr1 245258714 245259024 -36934640 + AluSq SINE Alu 1 312 -1 257 288 0 25 chr1 245259024 245259095 -36934569 - MLT1H1 LTR MaLR -452 90 20 245 294 49 29 chr1 245259122 245259224 -36934440 + L2 LINE L2 3210 3313 0 2548 74 0 0 chr1 245259231 245259541 -36934123 + AluY SINE Alu 1 310 -1 1941 132 20 3 chr1 245259877 245260173 -36933491 + AluSx SINE Alu 1 301 -11 230 54 0 27 chr1 245260173 245260210 -36933454 + (TA)n Simple_repeat Simple_repeat 2 37 0 1212 161 4 126 chr1 245260497 245260558 -36933106 + MER58A DNA MER1_type 1 68 -2352 2269 98 3 22 chr1 245260558 245260875 -36932789 - AluSx SINE Alu -1 311 1 1212 161 4 126 chr1 245260875 245260886 -36932778 + MER58A DNA MER1_type 68 79 -2341 2402 82 0 0 chr1 245260886 245261180 -36932484 - AluSc SINE Alu -15 294 1 1212 161 4 126 chr1 245261180 245261360 -36932304 + MER58A DNA MER1_type 79 223 -1 2214 125 3 6 chr1 245261880 245262193 -36931471 - AluSx SINE Alu 0 312 1 729 186 112 47 chr1 245262311 245262569 -36931095 - ORSL DNA AcHobo 0 275 1 2218 94 0 7 chr1 245263182 245263489 -36930175 - AluSc SINE Alu -4 305 1 1629 177 116 35 chr1 245263589 245263782 -36929882 + MLT1C LTR MaLR 1 177 -290 2098 77 0 7 chr1 245263782 245264055 -36929609 + AluSx SINE Alu 37 307 -5 1629 177 116 35 chr1 245264055 245264291 -36929373 + MLT1C LTR MaLR 177 465 -2 4052 131 46 36 chr1 245264409 245264551 -36929113 - MER50 LTR ERV1 -23 711 572 2235 82 0 19 chr1 245264551 245264867 -36928797 + AluY SINE Alu 1 310 -1 4052 131 46 36 chr1 245264867 245265169 -36928495 - MER50 LTR ERV1 -162 572 275 2007 114 0 44 chr1 245265169 245265307 -36928357 + AluSx SINE Alu 1 144 -168 2371 62 0 0 chr1 245265307 245265597 -36928067 + AluY SINE Alu 1 290 -21 191 61 30 0 chr1 245265603 245265636 -36928028 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2254 91 0 3 chr1 245265636 245265944 -36927720 + AluSc SINE Alu 1 307 -2 2007 114 0 44 chr1 245265944 245266114 -36927550 + AluSx SINE Alu 147 303 -9 4052 131 46 36 chr1 245266114 245266370 -36927294 - MER50 LTR ERV1 -459 275 3 240 323 32 40 chr1 245266383 245266507 -36927157 - MIR SINE MIR -65 197 75 908 236 31 27 chr1 245266947 245267172 -36926492 + MIR SINE MIR 31 256 -6 202 277 43 0 chr1 245267567 245267614 -36926050 + L2 LINE L2 3251 3299 -14 294 280 57 44 chr1 245267760 245267891 -36925773 - MIR SINE MIR -66 142 17 272 216 0 0 chr1 245268091 245268142 -36925522 - L2 LINE L2 -39 3233 3183 396 0 0 0 chr1 245268718 245268762 -36924902 + (CCA)n Simple_repeat Simple_repeat 1 44 0 484 313 28 7 chr1 245269201 245269384 -36924280 - MIR SINE MIR -71 137 3 534 295 35 40 chr1 245269589 245269681 -36923983 - MIR SINE MIR -26 236 145 2016 102 0 45 chr1 245269681 245269995 -36923669 - AluSc SINE Alu -9 300 1 534 295 35 40 chr1 245269995 245270129 -36923535 - MIR SINE MIR -117 145 11 603 237 23 68 chr1 245270658 245270691 -36922973 + MIR SINE MIR 3 36 -226 1881 107 59 7 chr1 245270691 245270980 -36922684 + AluSx SINE Alu 1 304 -8 603 237 23 68 chr1 245270980 245271123 -36922541 + MIR SINE MIR 36 171 -91 1029 119 93 5 chr1 245271526 245271742 -36921922 + MER33 DNA MER1_type 1 227 -97 1257 188 60 108 chr1 245271868 245272284 -36921380 - MSTD LTR MaLR 0 396 1 376 319 88 19 chr1 245272405 245272565 -36921099 + MIR3 SINE MIR 1 171 -37 195 42 0 0 chr1 245272628 245272652 -36921012 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 225 262 24 48 chr1 245272989 245273073 -36920591 - MIR3 SINE MIR -6 202 121 23 33 0 0 chr1 245273144 245273174 -36920490 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 245274941 245274962 -36918702 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr1 245275023 245275044 -36918620 + (A)n Simple_repeat Simple_repeat 1 21 0 2202 116 0 0 chr1 245275044 245275346 -36918318 + AluSx SINE Alu 1 302 -10 299 89 18 18 chr1 245275444 245275500 -36918164 + L1MB2 LINE L1 6098 6153 -18 998 276 16 8 chr1 245276005 245276251 -36917413 - MIR SINE MIR -1 261 14 1411 184 37 79 chr1 245276251 245276642 -36917022 + MLT1A2 LTR MaLR 1 428 0 2152 111 3 0 chr1 245276902 245277208 -36916456 - AluSx SINE Alu -5 307 1 1220 163 11 130 chr1 245277277 245277597 -36916067 - L1MC3 LINE L1 0 7785 7513 2024 126 3 0 chr1 245277597 245277906 -36915758 - AluSp SINE Alu -3 310 1 1220 163 11 130 chr1 245277906 245277953 -36915711 - L1MC3 LINE L1 -272 7513 7462 806 147 0 22 chr1 245277970 245278106 -36915558 - AluJb SINE Alu -4 308 176 598 87 0 43 chr1 245278146 245278238 -36915426 - L1MC3 LINE L1 -320 7465 7378 2165 104 16 0 chr1 245278244 245278551 -36915113 - AluSq SINE Alu 0 313 2 2222 99 0 7 chr1 245278752 245279055 -36914609 - AluSg SINE Alu -9 301 1 476 50 0 0 chr1 245279055 245279115 -36914549 - AluSc SINE Alu -175 134 75 2437 48 7 16 chr1 245279115 245279425 -36914239 - AluY SINE Alu -4 307 1 1211 144 0 21 chr1 245279457 245279513 -36914151 - AluSx SINE Alu -122 190 134 1956 152 0 0 chr1 245279513 245279815 -36913849 - AluSx SINE Alu -9 303 2 1211 144 0 21 chr1 245279815 245279952 -36913712 - AluSx SINE Alu -178 134 1 958 159 169 10 chr1 245279952 245280147 -36913517 - L1MC3 LINE L1 -396 7389 7164 2381 77 3 3 chr1 245280184 245280494 -36913170 + AluSp SINE Alu 2 311 -2 344 135 19 0 chr1 245280500 245280550 -36913114 + Tigger2 DNA MER2_type 21 71 -2647 316 190 103 0 chr1 245280550 245280608 -36913056 - MER2 DNA MER2_type 0 345 282 * 623 234 21 0 chr1 245280585 245280726 -36912938 - MER8 DNA MER2_type -62 177 34 2063 183 43 24 chr1 245280729 245281149 -36912515 - MSTA LTR MaLR 0 428 1 9567 165 15 12 chr1 245281149 245282794 -36910870 - MSTA-int LTR MaLR 0 1651 2 2439 150 61 10 chr1 245282795 245283202 -36910462 - MSTA LTR MaLR 0 428 1 703 204 7 0 chr1 245283253 245283390 -36910274 - L1MC3 LINE L1 -626 7159 7022 414 154 0 0 chr1 245283392 245283457 -36910207 - L1MC1 LINE L1 -1 6332 6268 4510 142 10 39 chr1 245283458 245284274 -36909390 + L1MA9 LINE L1 5292 6083 -229 1722 179 51 3 chr1 245284375 245284991 -36908673 - L1MC/D LINE L1 -743 5403 4918 2249 95 3 0 chr1 245285251 245285547 -36908117 - AluSp SINE Alu -16 297 1 379 229 18 9 chr1 245285911 245286020 -36907644 - MER115 DNA AcHobo -13 680 571 1357 174 28 54 chr1 245286131 245286522 -36907142 - SVA Other Other -573 813 433 1425 292 86 38 chr1 245286537 245286589 -36907075 - MER115 DNA AcHobo -96 597 549 1896 159 0 0 chr1 245286589 245286898 -36906766 - AluSx SINE Alu -3 309 1 1425 292 86 38 chr1 245286898 245287345 -36906319 - MER115 DNA AcHobo -144 549 74 555 177 0 0 chr1 245287386 245287482 -36906182 - MER5A DNA MER1_type -84 105 10 233 250 77 0 chr1 245287492 245287544 -36906120 - MER115 DNA AcHobo -635 58 3 2037 132 0 0 chr1 245287864 245288167 -36905497 - AluSx SINE Alu -9 303 1 1918 103 0 0 chr1 245288517 245288769 -36904895 - AluSg SINE Alu -58 252 1 248 248 289 8 chr1 245288797 245288918 -36904746 + MIR SINE MIR 48 202 -60 296 273 27 18 chr1 245288924 245289034 -36904630 - MLT1L LTR MaLR -10 605 495 741 241 47 66 chr1 245289165 245289422 -36904242 - MLT1L LTR MaLR -347 268 17 2325 69 3 16 chr1 245290084 245290401 -36903263 - AluSq SINE Alu 0 313 1 201 303 15 15 chr1 245290726 245290792 -36902872 + MIR3 SINE MIR 95 160 -48 211 147 0 88 chr1 245290805 245290873 -36902791 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 2982 84 38 70 chr1 245291555 245292057 -36901607 - LTR21A LTR ERV1 -19 486 1 1044 154 0 0 chr1 245292105 245292280 -36901384 - AluSg/x SINE Alu -4 308 134 2137 92 4 0 chr1 245292288 245292589 -36901075 - AluSp SINE Alu 0 302 1 1763 165 197 10 chr1 245292735 245293142 -36900522 + MLT1D LTR MaLR 23 505 0 2090 86 0 33 chr1 245293174 245293507 -36900157 - AluY SINE Alu 0 311 1 1868 82 0 4 chr1 245293738 245293981 -36899683 + AluY SINE Alu 56 297 -14 1845 213 22 3 chr1 245293982 245294349 -36899315 - MLT1A2 LTR MaLR 0 374 1 542 243 18 20 chr1 245294563 245294714 -36898950 - MLT1H LTR MaLR -240 171 42 879 259 35 111 chr1 245294874 245295271 -36898393 + L2 LINE L2 2906 3272 0 698 246 58 54 chr1 245295927 245296354 -36897310 - L1MC5 LINE L1 -32 7929 7501 869 203 40 34 chr1 245296736 245296913 -36896751 - MER45A DNA AcHobo 0 178 1 710 172 82 0 chr1 245297183 245297317 -36896347 + MIR SINE MIR 22 166 -96 2289 70 0 0 chr1 245297317 245297640 -36896024 + AluY SINE Alu 1 323 0 182 231 39 0 chr1 245297640 245297692 -36895972 + MIR SINE MIR 149 202 -60 315 288 144 0 chr1 245297871 245297982 -36895682 - L2 LINE L2 -2 3311 3185 2356 90 0 6 chr1 245298869 245299181 -36894483 + AluSg SINE Alu 1 310 0 1421 111 0 0 chr1 245299466 245299701 -36893963 + AluSg/x SINE Alu 86 320 0 385 123 0 0 chr1 245299948 245300005 -36893659 - Alu SINE Alu -1 300 244 324 0 0 0 chr1 245300005 245300041 -36893623 + (TG)n Simple_repeat Simple_repeat 2 37 0 1571 179 7 10 chr1 245300061 245300351 -36893313 + AluJo SINE Alu 1 289 -23 369 0 0 0 chr1 245300656 245300697 -36892967 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 302 31 23 chr1 245300848 245300977 -36892687 - L2 LINE L2 -21 3251 3122 273 135 0 0 chr1 245301042 245301094 -36892570 + (GA)n Simple_repeat Simple_repeat 1 52 0 2240 113 0 0 chr1 245301365 245301675 -36891989 - AluSx SINE Alu -2 310 1 394 283 29 29 chr1 245303305 245303443 -36890221 + MIR SINE MIR 2 139 -123 1940 105 53 33 chr1 245303967 245304271 -36889393 - AluSg SINE Alu 0 310 1 6029 83 19 50 chr1 245304675 245305962 -36887702 - SVA Other Other -554 1386 433 1698 72 41 0 chr1 245306063 245306284 -36887380 - AluSx SINE Alu -82 230 1 189 147 0 0 chr1 245306468 245306502 -36887162 + (TC)n Simple_repeat Simple_repeat 2 35 0 857 267 99 59 chr1 245306615 245307019 -36886645 + LTR16C LTR ERVL 72 491 0 2102 159 83 13 chr1 245307170 245307554 -36886110 + MSTB LTR MaLR 1 411 -15 1899 161 16 33 chr1 245307847 245308213 -36885451 + L1MB5 LINE L1 5815 6174 0 1582 109 42 8 chr1 245308576 245308815 -36884849 - AluSx SINE Alu -59 253 7 306 0 0 0 chr1 245309974 245310008 -36883656 + (CA)n Simple_repeat Simple_repeat 2 35 0 936 230 19 75 chr1 245310058 245310323 -36883341 - MIR SINE MIR 0 262 13 340 322 145 79 chr1 245310368 245310685 -36882979 - L2 LINE L2 -2 3270 2933 2230 73 11 3 chr1 245310741 245311028 -36882636 + AluSq SINE Alu 13 301 -12 2358 74 0 0 chr1 245311028 245311337 -36882327 + AluY SINE Alu 1 309 -2 256 333 44 16 chr1 245311394 245311577 -36882087 - L2 LINE L2 -521 2793 2606 616 236 17 29 chr1 245311577 245311751 -36881913 - MER5B DNA MER1_type -4 174 3 2100 99 7 7 chr1 245311844 245312136 -36881528 - AluSx SINE Alu -20 292 1 320 206 44 15 chr1 245312136 245312204 -36881460 + MIR SINE MIR 98 167 -95 21 36 0 0 chr1 245312211 245312239 -36881425 + AT_rich Low_complexity Low_complexity 1 28 0 1075 203 0 31 chr1 245312364 245312591 -36881073 - AluJo SINE Alu -12 300 81 1490 206 55 16 chr1 245312605 245312916 -36880748 + MSTD LTR MaLR 66 388 -8 207 280 0 40 chr1 245312919 245312994 -36880670 + MIR SINE MIR 191 262 0 557 293 83 83 chr1 245312999 245313418 -36880246 - L2 LINE L2 -693 2621 2200 2209 106 20 0 chr1 245313418 245313711 -36879953 + AluSp SINE Alu 1 299 -14 557 293 83 83 chr1 245313711 245313878 -36879786 - L2 LINE L2 -1113 2201 2035 883 134 158 12 chr1 245314532 245314696 -36878968 + MER5A DNA MER1_type 2 189 0 315 150 0 0 chr1 245314860 245314920 -36878744 + (CA)n Simple_repeat Simple_repeat 2 61 0 2109 121 38 0 chr1 245314981 245315271 -36878393 + AluSx SINE Alu 1 301 -11 242 123 246 0 chr1 245315309 245315366 -36878298 + L1MC5 LINE L1 7382 7452 -509 1841 150 11 14 chr1 245315414 245315526 -36878138 + AluJb SINE Alu 1 112 -200 2218 116 7 0 chr1 245315526 245315829 -36877835 + AluSx SINE Alu 1 305 -7 1841 150 11 14 chr1 245315829 245316003 -36877661 + AluJb SINE Alu 112 286 -26 672 80 0 0 chr1 245316003 245316091 -36877573 - AluS SINE Alu -223 89 2 2290 84 7 26 chr1 245316212 245316520 -36877144 + AluSg SINE Alu 1 302 -8 267 103 0 0 chr1 245316827 245316866 -36876798 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 647 317 13 4 chr1 245318734 245318961 -36874703 - MIR SINE MIR -19 243 15 1945 142 3 23 chr1 245319346 245319655 -36874009 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr1 245319671 245319693 -36873971 + AT_rich Low_complexity Low_complexity 1 22 0 2453 83 3 0 chr1 245320345 245320657 -36873007 + AluSp SINE Alu 1 313 0 323 324 97 62 chr1 245320888 245321228 -36872436 - L2 LINE L2 0 3272 2921 1974 166 0 0 chr1 245321788 245322084 -36871580 - AluJb SINE Alu -16 296 1 504 48 0 0 chr1 245322127 245322190 -36871474 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 191 254 18 36 chr1 245322443 245322498 -36871166 - L2 LINE L2 -16 3256 3203 23 0 0 0 chr1 245322540 245322563 -36871101 + AT_rich Low_complexity Low_complexity 1 23 0 189 246 130 0 chr1 245322845 245322914 -36870750 - MIR SINE MIR -111 97 20 213 94 0 0 chr1 245324093 245324125 -36869539 + (CA)n Simple_repeat Simple_repeat 1 32 0 372 271 101 8 chr1 245324224 245324353 -36869311 - MIR SINE MIR -48 214 74 483 244 169 23 chr1 245324354 245324526 -36869138 - MIR SINE MIR 0 262 66 688 111 17 0 chr1 245324537 245324654 -36869010 - Charlie5 DNA MER1_type -49 2563 2445 938 141 14 0 chr1 245324664 245324806 -36868858 - FRAM SINE Alu -9 167 24 9105 164 53 35 chr1 245324815 245326216 -36867448 - Charlie5 DNA MER1_type -131 2493 1118 4105 122 65 60 chr1 245326216 245326587 -36867077 - L1MA9 LINE L1 -5 6307 5939 2300 105 0 3 chr1 245326587 245326891 -36866773 - AluSg SINE Alu -7 303 1 2273 104 0 0 chr1 245326893 245327190 -36866474 - AluSx SINE Alu -15 297 1 4105 122 65 60 chr1 245327190 245327564 -36866100 - L1MA9 LINE L1 -373 5939 5555 9105 164 53 35 chr1 245327564 245327897 -36865767 - Charlie5 DNA MER1_type -1506 1118 792 1951 107 29 0 chr1 245327897 245328169 -36865495 - AluSx SINE Alu -32 280 1 9105 164 53 35 chr1 245328169 245328281 -36865383 - Charlie5 DNA MER1_type -1832 792 683 1870 151 3 3 chr1 245328281 245328572 -36865092 - AluJb SINE Alu -21 291 1 2102 107 0 53 chr1 245328578 245328896 -36864768 - AluSx SINE Alu -11 301 1 9105 164 53 35 chr1 245328896 245329071 -36864593 - Charlie5 DNA MER1_type -1945 679 428 236 155 0 35 chr1 245329076 245329134 -36864530 + (TTA)n Simple_repeat Simple_repeat 1 56 0 727 132 100 20 chr1 245329157 245329328 -36864336 - Charlie5 DNA MER1_type -2503 109 1 539 255 69 5 chr1 245329978 245330182 -36863482 - L1MEc LINE L1 -5013 1383 1167 433 231 58 13 chr1 245330205 245330361 -36863303 + L1MEc LINE L1 917 1079 -5317 1956 123 0 11 chr1 245330364 245330640 -36863024 - AluSx SINE Alu -39 273 1 2409 268 99 31 chr1 245330640 245331719 -36861945 - L1MEc LINE L1 -5209 1187 35 24 0 0 0 chr1 245332181 245332205 -36861459 + AT_rich Low_complexity Low_complexity 1 24 0 191 300 29 14 chr1 245332878 245332948 -36860716 - MIR SINE MIR -24 238 168 245 340 52 0 chr1 245332983 245333080 -36860584 + L2 LINE L2 2253 2354 -960 593 346 63 43 chr1 245333094 245333676 -36859988 + L2 LINE L2 2643 3218 -54 182 62 31 0 chr1 245334092 245334124 -36859540 + (TG)n Simple_repeat Simple_repeat 1 33 0 249 57 0 0 chr1 245335189 245335224 -36858440 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2313 61 0 7 chr1 245335229 245335509 -36858155 - AluY SINE Alu -32 279 2 652 299 191 32 chr1 245335511 245336112 -36857552 + L2 LINE L2 2127 2823 -491 390 363 46 49 chr1 245336218 245336546 -36857118 + L2 LINE L2 2946 3272 0 751 193 0 0 chr1 245337085 245337199 -36856465 + MER81 DNA DNA 1 114 0 363 314 65 0 chr1 245337305 245337429 -36856235 + L2 LINE L2 3181 3312 -1 2269 105 0 0 chr1 245337846 245338141 -36855523 - AluSx SINE Alu -17 295 1 425 305 56 35 chr1 245338475 245338672 -36854992 + L2 LINE L2 2631 2831 -483 2426 94 3 0 chr1 245339184 245339493 -36854171 - AluSq SINE Alu -3 310 1 272 339 110 83 chr1 245339503 245339757 -36853907 + L2 LINE L2 3007 3267 -5 322 258 103 0 chr1 245340030 245340127 -36853537 + L2 LINE L2 2484 2590 -724 1446 221 80 30 chr1 245340337 245340763 -36852901 - L1MA9 LINE L1 -83 6229 5783 224 177 65 0 chr1 245340763 245340825 -36852839 + (TA)n Simple_repeat Simple_repeat 1 66 0 3002 160 101 65 chr1 245340825 245341267 -36852397 - L1MA9 LINE L1 -504 5808 5383 2345 86 0 20 chr1 245341267 245341570 -36852094 - AluSq SINE Alu -15 298 2 3002 160 101 65 chr1 245341570 245341628 -36852036 - L1MA9 LINE L1 -929 5383 5329 2147 145 0 0 chr1 245341628 245341938 -36851726 - AluSx SINE Alu -2 310 1 3002 160 101 65 chr1 245341938 245342645 -36851019 - L1MA9 LINE L1 -983 5329 4536 1825 167 0 3 chr1 245342996 245343295 -36850369 - AluJb SINE Alu -11 301 4 2517 71 7 0 chr1 245344360 245344668 -36848996 - AluSg SINE Alu 0 310 1 635 286 11 27 chr1 245344794 245344979 -36848685 - MER5A DNA MER1_type -1 188 7 2354 60 0 13 chr1 245345224 245345525 -36848139 + AluSg SINE Alu 1 297 -13 309 304 151 43 chr1 245347611 245348002 -36845662 + L1M2 LINE L1 374 806 -6043 212 0 36 0 chr1 245349887 245349915 -36843749 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1998 114 4 0 chr1 245349915 245350187 -36843477 - AluSq SINE Alu -40 273 1 293 351 23 15 chr1 245351271 245351402 -36842262 - MIR SINE MIR -114 148 17 292 243 149 0 chr1 245351465 245351572 -36842092 + MIR SINE MIR 94 216 -46 24 32 0 0 chr1 245352384 245352415 -36841249 + AT_rich Low_complexity Low_complexity 1 31 0 631 227 51 51 chr1 245352941 245352976 -36840688 - MER5B DNA MER1_type -2 176 142 1604 125 114 14 chr1 245352976 245353257 -36840407 - AluSx SINE Alu -3 309 1 631 227 51 51 chr1 245353257 245353273 -36840391 - MER5B DNA MER1_type -36 142 127 216 0 0 0 chr1 245353273 245353297 -36840367 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 631 227 51 51 chr1 245353297 245353420 -36840244 - MER5B DNA MER1_type -50 128 1 1530 163 47 40 chr1 245354430 245354731 -36838933 - AluJo SINE Alu -1 311 9 1702 50 0 15 chr1 245354792 245354992 -36838672 + MER107 DNA MER1_type 1 197 0 325 309 67 48 chr1 245356701 245356866 -36836798 - L2 LINE L2 -213 3059 2892 562 314 124 27 chr1 245357043 245357802 -36835862 - L2 LINE L2 -653 2661 1770 962 286 62 34 chr1 245357804 245358220 -36835444 - L2 LINE L2 -611 2703 2276 2071 99 53 33 chr1 245358972 245359275 -36834389 - AluSg SINE Alu -1 309 1 2105 120 0 7 chr1 245360195 245360495 -36833169 - AluSx SINE Alu -14 298 1 25 0 0 0 chr1 245360816 245360841 -36832823 + AT_rich Low_complexity Low_complexity 1 25 0 34 0 0 0 chr1 245361246 245361280 -36832384 + AT_rich Low_complexity Low_complexity 1 34 0 2056 123 10 3 chr1 245361395 245361688 -36831976 - AluSx SINE Alu -17 295 1 4400 184 54 10 chr1 245362958 245364418 -36829246 - L1MB8 LINE L1 -6 6172 4641 555 257 93 0 chr1 245364399 245364613 -36829051 - L1MB8 LINE L1 -3078 3068 2835 * 1074 192 18 0 chr1 245364647 245364866 -36828798 + AluSp SINE Alu 1 223 -90 233 224 31 31 chr1 245365044 245365142 -36828522 + (CGGGG)n Simple_repeat Simple_repeat 5 102 0 703 241 0 19 chr1 245365314 245365476 -36828188 - FAM SINE Alu -16 159 1 2106 120 0 7 chr1 245365481 245365780 -36827884 - AluSc SINE Alu -12 297 1 2267 56 52 0 chr1 245365786 245366073 -36827591 - AluY SINE Alu -7 304 3 651 179 43 113 chr1 245366094 245366396 -36827268 - L1MB8 LINE L1 -3319 2827 2547 2067 82 0 54 chr1 245366712 245367006 -36826658 - AluSx SINE Alu -19 293 16 1743 113 0 17 chr1 245367354 245367594 -36826070 - AluSx SINE Alu -76 236 1 25 0 0 0 chr1 245367644 245367669 -36825995 + AT_rich Low_complexity Low_complexity 1 25 0 1971 150 0 10 chr1 245367771 245368078 -36825586 - AluSx SINE Alu -6 306 3 584 88 0 0 chr1 245368387 245368467 -36825197 - MADE1 DNA Mariner 0 80 1 2235 89 0 20 chr1 245370604 245370907 -36822757 + AluSq SINE Alu 1 297 -16 391 253 56 51 chr1 245371584 245371762 -36821902 - Charlie8 DNA MER1_type -2129 288 110 1027 171 63 9 chr1 245371800 245372079 -36821585 - MER2 DNA MER2_type 0 345 2 345 87 0 0 chr1 245372105 245372151 -36821513 + AluJo SINE Alu 56 101 -201 258 176 33 55 chr1 245372161 245372252 -36821412 + (CATA)n Simple_repeat Simple_repeat 3 91 0 1184 172 5 5 chr1 245372252 245372455 -36821209 + AluJo SINE Alu 105 307 -5 2129 139 0 3 chr1 245373268 245373570 -36820094 - AluJb SINE Alu -11 301 1 1794 137 7 14 chr1 245374178 245374455 -36819209 + AluSq SINE Alu 1 275 -38 1973 132 3 17 chr1 245375200 245375496 -36818168 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 245376403 245376427 -36817237 + AT_rich Low_complexity Low_complexity 1 24 0 1612 150 7 29 chr1 245376427 245376728 -36816936 + AluJb SINE Alu 17 311 0 26 30 0 0 chr1 245376850 245376883 -36816781 + AT_rich Low_complexity Low_complexity 1 33 0 694 184 32 0 chr1 245378310 245378435 -36815229 - FLAM_C SINE Alu -3 130 2 216 0 0 0 chr1 245378435 245378459 -36815205 + (T)n Simple_repeat Simple_repeat 1 24 0 2298 106 3 0 chr1 245378977 245379278 -36814386 + AluSp SINE Alu 3 304 -9 292 307 198 28 chr1 245379372 245379584 -36814080 + L2 LINE L2 3065 3312 -1 2129 79 0 108 chr1 245379644 245379985 -36813679 - AluSx SINE Alu -8 304 1 372 316 113 32 chr1 245380280 245380527 -36813137 + L3b LINE CR1 1114 1380 -203 2108 131 3 19 chr1 245382038 245382352 -36811312 + AluSx SINE Alu 1 309 -3 2312 84 17 0 chr1 245382957 245383255 -36810409 - AluSp SINE Alu -10 303 1 1696 216 40 28 chr1 245383373 245383869 -36809795 + L1M4c LINE L1 1197 1698 -4686 1673 178 10 17 chr1 245383878 245384170 -36809494 + AluSx SINE Alu 18 307 -5 2529 156 16 22 chr1 245384192 245384691 -36808973 + L1MB5 LINE L1 5671 6166 -8 2116 131 3 6 chr1 245385250 245385563 -36808101 + AluSx SINE Alu 1 312 0 1503 175 4 37 chr1 245386984 245387253 -36806411 + AluJo SINE Alu 1 260 -52 2289 110 0 0 chr1 245387268 245387567 -36806097 - AluSx SINE Alu -13 299 1 21 0 0 0 chr1 245387579 245387600 -36806064 + AT_rich Low_complexity Low_complexity 1 21 0 1687 135 9 80 chr1 245387884 245388211 -36805453 - AluJo SINE Alu -8 304 1 24 67 0 0 chr1 245388213 245388258 -36805406 + AT_rich Low_complexity Low_complexity 1 45 0 2109 125 0 0 chr1 245388510 245388813 -36804851 + AluSg1 SINE Alu 1 303 -6 239 188 21 0 chr1 245388891 245388939 -36804725 + MER3 DNA MER1_type 39 87 -122 21 0 0 0 chr1 245389369 245389390 -36804274 + AT_rich Low_complexity Low_complexity 1 21 0 276 340 147 51 chr1 245389468 245389525 -36804139 + L2 LINE L2 2454 2504 -768 561 227 50 17 chr1 245389525 245389644 -36804020 - FLAM_A SINE Alu -10 123 1 276 340 147 51 chr1 245389644 245390117 -36803547 + L2 LINE L2 2504 3035 -237 318 129 0 32 chr1 245390117 245390179 -36803485 - Alu SINE Alu 0 300 241 2033 119 0 0 chr1 245390339 245390607 -36803057 + AluSx SINE Alu 1 268 -44 262 265 0 0 chr1 245390691 245390740 -36802924 + L2 LINE L2 3246 3294 -19 2014 102 7 0 chr1 245390741 245391015 -36802649 + AluSx SINE Alu 1 276 -36 22 35 0 0 chr1 245391531 245391560 -36802104 + AT_rich Low_complexity Low_complexity 1 29 0 2157 110 0 10 chr1 245391848 245392138 -36801526 - AluSx SINE Alu -21 291 5 32 26 0 0 chr1 245392771 245392810 -36800854 + AT_rich Low_complexity Low_complexity 1 39 0 2324 87 0 13 chr1 245393549 245393849 -36799815 + AluY SINE Alu 2 297 -14 1385 149 167 0 chr1 245394046 245394334 -36799330 + MER7A DNA MER2_type 1 334 -12 2432 71 0 0 chr1 245394367 245394661 -36799003 - AluSg SINE Alu -16 294 1 2242 78 0 3 chr1 245395367 245395677 -36797987 + AluY SINE Alu 1 309 0 1885 116 83 0 chr1 245396207 245396483 -36797181 - AluSx SINE Alu -13 299 1 375 175 38 0 chr1 245400125 245400205 -36793459 - MIR SINE MIR -119 143 61 1707 173 0 21 chr1 245400603 245400886 -36792778 + AluJo SINE Alu 1 277 -35 2297 74 30 0 chr1 245401072 245401368 -36792296 + AluY SINE Alu 1 305 -6 263 294 44 0 chr1 245401380 245401448 -36792216 - L2 LINE L2 -11 3261 3191 249 339 139 40 chr1 245401500 245401751 -36791913 - L2 LINE L2 -191 3081 2806 1046 174 31 184 chr1 245402276 245402431 -36791233 + MLT1A1 LTR MaLR 1 64 -301 2113 121 7 0 chr1 245402431 245402728 -36790936 + AluSx SINE Alu 1 299 -13 1046 174 31 184 chr1 245402728 245402958 -36790706 + MLT1A1 LTR MaLR 64 327 -38 360 97 17 94 chr1 245402992 245403090 -36790574 + MLT1A1 LTR MaLR 304 365 0 875 310 44 25 chr1 245403594 245403709 -36789955 + L1MC4 LINE L1 5255 5366 -2442 1918 152 3 3 chr1 245403709 245404006 -36789658 - AluJb SINE Alu -15 297 1 875 310 44 25 chr1 245404006 245404500 -36789164 + L1MC4 LINE L1 5366 5876 -1932 1225 161 56 39 chr1 245404875 245405161 -36788503 - MSTC LTR MaLR -137 291 1 297 214 55 41 chr1 245405327 245405472 -36788192 + L1ME4a LINE L1 5975 6121 0 463 337 176 22 chr1 245405514 245406253 -36787411 - L2 LINE L2 -646 2668 1816 271 283 17 17 chr1 245406285 245406405 -36787259 + L1ME4a LINE L1 5813 5932 -189 312 297 0 0 chr1 245406424 245406515 -36787149 + MIR SINE MIR 16 106 -156 234 146 0 24 chr1 245406529 245406570 -36787094 + MIR SINE MIR 221 260 -2 2362 91 0 3 chr1 245406619 245406917 -36786747 + AluY SINE Alu 1 297 -14 180 0 0 0 chr1 245406917 245406937 -36786727 + (TA)n Simple_repeat Simple_repeat 2 21 0 252 187 0 130 chr1 245406964 245407087 -36786577 + L1ME4a LINE L1 6014 6120 -1 987 177 92 25 chr1 245407149 245407474 -36786190 - MSTD LTR MaLR -2 394 3 2548 65 0 0 chr1 245407593 245407901 -36785763 - AluY SINE Alu -2 309 2 242 308 118 38 chr1 245407904 245408115 -36785549 - L2 LINE L2 -1716 1598 1371 382 230 0 0 chr1 245409248 245409335 -36784329 + L1MC4 LINE L1 6458 6544 -1498 2097 186 63 35 chr1 245409380 245409900 -36783764 + L1MC4 LINE L1 6529 7063 -979 1237 225 33 38 chr1 245409921 245410357 -36783307 + L1MEc LINE L1 1882 2273 -3942 1441 212 60 183 chr1 245410357 245410723 -36782941 - L2 LINE L2 -251 3062 2652 2031 142 0 24 chr1 245410723 245411019 -36782645 - AluJo SINE Alu -23 289 1 569 223 3 5 chr1 245411019 245411162 -36782502 - L1ME1 LINE L1 -9 6157 6032 1441 212 60 183 chr1 245411162 245411609 -36782055 - L2 LINE L2 -659 2654 2231 305 298 232 12 chr1 245411940 245412108 -36781556 - L3 LINE CR1 -1 1576 1372 2138 122 20 0 chr1 245412110 245412405 -36781259 + AluSx SINE Alu 2 302 -10 21 36 0 0 chr1 245413433 245413461 -36780203 + AT_rich Low_complexity Low_complexity 1 28 0 400 322 34 0 chr1 245413465 245413583 -36780081 - MER5A DNA MER1_type -50 139 18 284 263 13 0 chr1 245413734 245413810 -36779854 + MIR SINE MIR 186 262 0 249 230 176 0 chr1 245414350 245414424 -36779240 - L2 LINE L2 -1 3312 3226 2291 80 3 29 chr1 245414565 245414877 -36778787 + AluSq SINE Alu 1 304 -9 486 269 53 23 chr1 245415108 245415279 -36778385 + MIR SINE MIR 17 192 -70 2451 52 0 3 chr1 245415305 245415594 -36778070 - AluY SINE Alu -23 288 1 270 81 0 0 chr1 245415594 245415631 -36778033 + (T)n Simple_repeat Simple_repeat 1 37 0 2185 121 0 0 chr1 245416625 245416915 -36776749 + AluSx SINE Alu 1 290 -22 1625 195 89 65 chr1 245416952 245417098 -36776566 + MLT1D LTR MaLR 1 142 -363 1856 151 16 29 chr1 245417098 245417410 -36776254 + AluJb SINE Alu 1 308 -4 1625 195 89 65 chr1 245417410 245417756 -36775908 + MLT1D LTR MaLR 142 505 0 1181 107 117 19 chr1 245418171 245418376 -36775288 - MER6 DNA MER2_type 0 865 641 313 270 0 22 chr1 245418497 245418586 -36775078 + AluSg/x SINE Alu 204 290 -12 1460 221 87 61 chr1 245418623 245418768 -36774896 + MLT1D LTR MaLR 1 141 -364 1829 151 16 29 chr1 245418768 245419080 -36774584 + AluJb SINE Alu 1 308 -4 1460 221 87 61 chr1 245419080 245419426 -36774238 + MLT1D LTR MaLR 141 505 0 3404 140 67 7 chr1 245419841 245420412 -36773252 - MER6A DNA MER2_type 0 605 1 22 35 0 0 chr1 245420423 245420452 -36773212 + AT_rich Low_complexity Low_complexity 1 29 0 1785 148 7 11 chr1 245420452 245420776 -36772888 + AluSx SINE Alu 1 323 0 412 267 73 82 chr1 245420798 245420927 -36772737 + L1MC4a LINE L1 5600 5729 -2079 1859 136 41 0 chr1 245420927 245421221 -36772443 + AluSx SINE Alu 1 306 -6 412 267 73 82 chr1 245421221 245421333 -36772331 + L1MC4a LINE L1 5729 5840 -1968 666 214 23 0 chr1 245421333 245421464 -36772200 + MER94 DNA DNA 1 134 0 412 267 73 82 chr1 245421464 245421536 -36772128 + L1MC4a LINE L1 5840 5911 -1897 225 83 0 0 chr1 245421544 245421580 -36772084 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1618 198 40 38 chr1 245421747 245422120 -36771544 - MLT1A2 LTR MaLR 0 374 1 1140 196 11 60 chr1 245422209 245422490 -36771174 - MLT2B1 LTR ERVL -253 267 1 2065 147 0 0 chr1 245422533 245422845 -36770819 - AluSx SINE Alu 0 312 1 1715 167 25 0 chr1 245423884 245424166 -36769498 - AluJo SINE Alu -23 289 1 1134 111 0 0 chr1 245425198 245425360 -36768304 - AluSq SINE Alu -14 299 138 1041 113 0 0 chr1 245425981 245426114 -36767550 + AluY SINE Alu 1 133 -178 2275 95 0 30 chr1 245426125 245426429 -36767235 + AluSq SINE Alu 1 295 -18 1687 176 27 17 chr1 245427440 245427735 -36765929 - AluJb SINE Alu -14 298 1 989 247 66 34 chr1 245427736 245428145 -36765519 - L1MEc LINE L1 -5001 1395 974 1746 134 16 0 chr1 245428152 245428406 -36765258 - AluSx SINE Alu -13 299 42 263 77 0 0 chr1 245428434 245428473 -36765191 - AluS SINE Alu -226 77 39 560 91 0 0 chr1 245428498 245428575 -36765089 - AluS SINE Alu -235 77 1 2685 264 40 41 chr1 245428579 245429048 -36764616 - L1MEc LINE L1 -5422 974 506 2301 86 20 0 chr1 245429048 245429350 -36764314 - AluSg SINE Alu -2 308 1 2685 264 40 41 chr1 245429350 245429772 -36763892 - L1MEc LINE L1 -5890 506 82 2329 92 0 16 chr1 245429772 245430077 -36763587 + AluSq SINE Alu 1 300 -13 2685 264 40 41 chr1 245430077 245430128 -36763536 - L1MEc LINE L1 -6314 82 32 302 280 29 97 chr1 245430254 245430349 -36763315 - L2 LINE L2 0 3313 3238 216 0 0 0 chr1 245430349 245430373 -36763291 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 302 280 29 97 chr1 245430373 245430484 -36763180 - L2 LINE L2 -75 3238 3121 2108 117 7 0 chr1 245430495 245430786 -36762878 + AluSg SINE Alu 1 293 -17 450 170 32 21 chr1 245430850 245430944 -36762720 + LTR16A1 LTR ERVL 363 457 0 1944 145 64 6 chr1 245431143 245431488 -36762176 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr1 245431753 245431780 -36761884 + (A)n Simple_repeat Simple_repeat 1 27 0 1964 204 11 6 chr1 245432527 245432890 -36760774 - MLT1A1 LTR MaLR 0 365 1 219 315 0 0 chr1 245432938 245433011 -36760653 - MIR SINE MIR -122 140 68 205 255 20 0 chr1 245434539 245434590 -36759074 + MIR3 SINE MIR 151 202 -6 409 343 30 6 chr1 245435505 245435671 -36757993 + MIR SINE MIR 20 189 -73 430 305 50 0 chr1 245435899 245436076 -36757588 + MIR SINE MIR 19 206 -55 2231 140 0 0 chr1 245436226 245436534 -36757130 - AluSx SINE Alu -4 308 1 1967 142 7 3 chr1 245437161 245437463 -36756201 + AluSx SINE Alu 1 303 -9 1092 234 167 44 chr1 245437465 245437800 -36755864 - L1ME4a LINE L1 -4 6117 5825 2242 85 0 44 chr1 245437800 245438116 -36755548 + AluY SINE Alu 1 302 -9 1092 234 167 44 chr1 245438116 245438349 -36755315 - L1ME4a LINE L1 -296 5825 5479 1117 399 0 42 chr1 245438921 245439232 -36754432 - AluSx SINE Alu -4 298 1 2299 45 59 7 chr1 245439237 245439524 -36754140 - AluY SINE Alu -9 302 1 1738 152 32 86 chr1 245439543 245440011 -36753653 - L1MEc LINE L1 -3319 3638 3196 318 149 64 75 chr1 245440058 245440124 -36753540 + L1M4 LINE L1 2272 2338 -3808 3815 81 12 4 chr1 245440124 245440633 -36753031 - LTR10D LTR ERV1 0 513 1 318 149 64 75 chr1 245440633 245440660 -36753004 + L1M4 LINE L1 2338 2364 -3782 904 257 43 72 chr1 245440736 245440942 -36752722 - L1MEc LINE L1 -3919 3219 3008 1901 122 4 14 chr1 245440942 245441256 -36752408 - AluSg SINE Alu 0 315 5 904 257 43 72 chr1 245441256 245441697 -36751967 - L1MEc LINE L1 -4130 3008 2590 441 278 47 50 chr1 245441709 245442051 -36751613 - L1MEc LINE L1 -4436 2702 2362 1094 176 53 33 chr1 245442059 245442303 -36751361 - AluJb SINE Alu -25 287 39 1274 235 180 23 chr1 245442304 245442612 -36751052 - L1MEc LINE L1 -4731 2228 1970 2271 114 0 0 chr1 245442612 245442910 -36750754 - AluSx SINE Alu -14 298 1 1274 235 180 23 chr1 245442910 245443206 -36750458 - L1MEc LINE L1 -4989 1970 1529 4610 241 106 39 chr1 245443731 245443925 -36749739 - L1MEc LINE L1 -5299 1560 1380 1357 84 16 21 chr1 245443925 245444115 -36749549 + MER30B DNA MER1_type 2 190 0 4610 241 106 39 chr1 245444115 245445192 -36748472 - L1MEc LINE L1 -5479 1380 176 5601 117 169 21 chr1 245445192 245445392 -36748272 + Tigger3b DNA MER2_type 1 170 -2858 2267 69 21 3 chr1 245445392 245445680 -36747984 + AluY SINE Alu 2 294 -17 5601 117 169 21 chr1 245445680 245446552 -36747112 + Tigger3b DNA MER2_type 170 1231 0 4610 241 106 39 chr1 245446552 245446741 -36746923 - L1MEc LINE L1 -6683 176 1 337 258 10 10 chr1 245446825 245446922 -36746742 + L1M4 LINE L1 3365 3461 -2685 549 244 92 21 chr1 245446953 245447191 -36746473 + L1M4 LINE L1 3663 3917 -2229 485 324 68 27 chr1 245447195 245447491 -36746173 - L1MEc LINE L1 -6009 387 80 258 248 179 7 chr1 245447599 245447744 -36745920 - L1M LINE L1 -744 5426 5257 491 260 159 63 chr1 245447757 245448299 -36745365 - L1M4 LINE L1 -1131 5015 4422 737 231 87 24 chr1 245448309 245448560 -36745104 + MLT1G LTR MaLR 167 507 -83 1496 176 26 30 chr1 245448638 245448759 -36744905 - AluJo SINE Alu -46 266 146 2059 118 7 23 chr1 245448759 245449063 -36744601 - AluSx SINE Alu -13 299 1 1496 176 26 30 chr1 245449063 245449208 -36744456 - AluJo SINE Alu -166 146 1 288 155 17 0 chr1 245449213 245449271 -36744393 + MLT1G LTR MaLR 483 541 -1 4637 133 40 16 chr1 245449900 245450629 -36743035 + Tigger1 DNA MER2_type 1 746 -1672 499 254 129 35 chr1 245450629 245450861 -36742803 - HAL1 LINE L1 -861 1646 1393 281 262 222 43 chr1 245450921 245451200 -36742464 - HAL1 LINE L1 -1651 856 528 189 298 0 0 chr1 245451610 245451657 -36742007 + MIR SINE MIR 52 98 -110 400 220 169 7 chr1 245451701 245451894 -36741770 + MER112 DNA MER1_type 1 251 -9 1863 99 0 0 chr1 245451931 245452164 -36741500 + AluSg SINE Alu 1 233 -77 22 0 0 0 chr1 245452173 245452195 -36741469 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr1 245452627 245452654 -36741010 + AT_rich Low_complexity Low_complexity 1 27 0 1779 164 52 6 chr1 245452865 245453195 -36740469 - MER2 DNA MER2_type 0 345 1 2530 79 0 6 chr1 245453834 245454149 -36739515 - AluSq SINE Alu 0 313 1 6983 63 10 46 chr1 245454175 245455168 -36738496 - SVA Other Other 0 1386 430 1417 86 48 83 chr1 245455185 245455580 -36738084 - SVA Other Other -523 863 483 6286 70 21 17 chr1 245455609 245456472 -36737192 - SVA Other Other -520 866 1 319 0 118 0 chr1 245456472 245456523 -36737141 + GA-rich Low_complexity Low_complexity 5 61 0 423 0 0 0 chr1 245456983 245457030 -36736634 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2498 42 0 3 chr1 245457032 245457321 -36736343 - AluY SINE Alu -23 288 1 23 0 0 0 chr1 245457326 245457349 -36736315 + AT_rich Low_complexity Low_complexity 1 23 0 201 162 0 0 chr1 245457496 245457533 -36736131 + A-rich Low_complexity Low_complexity 1 37 0 652 239 65 57 chr1 245458372 245458619 -36735045 - L2 LINE L2 -1 3312 3064 1978 113 4 0 chr1 245458757 245459023 -36734641 - AluSg1 SINE Alu -8 301 35 24 0 0 0 chr1 245459605 245459629 -36734035 + AT_rich Low_complexity Low_complexity 1 24 0 1655 125 89 32 chr1 245459790 245460071 -36733593 - MER7A DNA MER2_type 0 346 52 198 0 0 0 chr1 245460095 245460117 -36733547 + (TC)n Simple_repeat Simple_repeat 1 22 0 1554 167 9 96 chr1 245460121 245460444 -36733220 - AluJo SINE Alu -15 297 3 760 177 38 32 chr1 245460449 245460607 -36733057 - AluJb SINE Alu -18 294 136 2510 72 0 0 chr1 245460636 245460940 -36732724 - AluY SINE Alu -7 304 1 240 273 0 0 chr1 245460941 245460985 -36732679 - MER7A DNA MER2_type -304 44 1 22 35 0 0 chr1 245461033 245461062 -36732602 + AT_rich Low_complexity Low_complexity 1 29 0 1749 239 100 16 chr1 245461382 245461880 -36731784 + MLT1E LTR MaLR 3 542 -51 250 246 14 0 chr1 245462024 245462093 -36731571 + MLT1E LTR MaLR 498 567 0 1781 153 24 24 chr1 245462093 245462388 -36731276 + AluJb SINE Alu 1 295 -17 1766 155 0 33 chr1 245462514 245462817 -36730847 + AluSx SINE Alu 1 293 -19 189 28 139 0 chr1 245462838 245462874 -36730790 + A-rich Low_complexity Low_complexity 5 45 0 2300 106 3 13 chr1 245463031 245463343 -36730321 + AluSx SINE Alu 1 309 -3 30 27 0 0 chr1 245464581 245464618 -36729046 + AT_rich Low_complexity Low_complexity 1 37 0 1295 95 5 5 chr1 245465039 245465229 -36728435 - AluSq SINE Alu -8 305 116 2058 57 8 4 chr1 245465913 245466175 -36727489 - AluSc SINE Alu -9 300 38 3683 243 121 59 chr1 245466720 245468367 -36725297 + L1MA4 LINE L1 10 2528 -5037 2338 72 20 0 chr1 245468367 245468672 -36724992 + AluY SINE Alu 1 311 0 15218 155 45 33 chr1 245468672 245469116 -36724548 + L1MA4 LINE L1 3213 3650 -4069 2160 123 0 0 chr1 245469116 245469417 -36724247 + AluSx SINE Alu 1 301 -11 15218 155 45 33 chr1 245469417 245469802 -36723862 + L1MA4 LINE L1 3650 4029 -3690 2167 69 0 10 chr1 245469802 245470090 -36723574 + AluY SINE Alu 1 285 -26 15218 155 45 33 chr1 245470090 245470583 -36723081 + L1MA4 LINE L1 4029 4514 -3205 2064 116 10 0 chr1 245470583 245470886 -36722778 + AluSc SINE Alu 1 306 -3 15218 155 45 33 chr1 245470886 245471621 -36722043 + L1MA4 LINE L1 4514 5238 -2481 2097 129 7 0 chr1 245471621 245471930 -36721734 + AluSx SINE Alu 2 312 0 15218 155 45 33 chr1 245471930 245474308 -36719356 + L1MA4 LINE L1 5238 7708 -11 384 292 37 79 chr1 245474467 245474683 -36718981 - L2 LINE L2 -4 3309 3103 2083 129 0 0 chr1 245475226 245475535 -36718129 + AluSx SINE Alu 1 309 -3 251 178 78 78 chr1 245476468 245476558 -36717106 + Charlie7 DNA MER1_type 16 105 -2507 * 419 208 75 23 chr1 245476543 245476716 -36716948 + Charlie7 DNA MER1_type 2431 2612 0 201 306 47 12 chr1 245477055 245477140 -36716524 + L2 LINE L2 2981 3068 -204 2377 126 54 42 chr1 245478373 245478571 -36715093 + Tigger2a DNA MER2_type 1 195 -2513 2155 98 17 0 chr1 245478571 245478866 -36714798 - AluY SINE Alu -11 300 1 2377 126 54 42 chr1 245478866 245479096 -36714568 + Tigger2a DNA MER2_type 195 434 0 251 330 121 9 chr1 245479872 245480218 -36713446 - L1M4 LINE L1 -812 5334 4950 356 369 44 22 chr1 245480340 245480565 -36713099 - L1M4 LINE L1 -1350 4796 4567 516 317 111 31 chr1 245480708 245481058 -36712606 - L1M4 LINE L1 -3529 2617 2240 491 106 21 42 chr1 245481296 245481438 -36712226 + (CA)n Simple_repeat Simple_repeat 1 139 0 237 305 42 58 chr1 245481465 245481655 -36712009 + MLT1J LTR MaLR 325 511 0 2110 92 0 16 chr1 245481680 245481983 -36711681 - AluY SINE Alu -13 298 1 227 242 63 53 chr1 245483195 245483290 -36710374 - HAL1 LINE L1 -1601 906 811 254 323 60 48 chr1 245484441 245484608 -36709056 + MER5A DNA MER1_type 20 188 -1 292 250 0 0 chr1 245486991 245487071 -36706593 + A-rich Low_complexity Low_complexity 1 80 0 2416 67 3 3 chr1 245487415 245487728 -36705936 + AluSp SINE Alu 1 313 0 430 304 37 78 chr1 245487731 245487948 -36705716 + L2 LINE L2 3028 3235 -37 1754 194 42 19 chr1 245488060 245488437 -36705227 + MLT1B LTR MaLR 1 386 -4 678 277 40 20 chr1 245488596 245488798 -36704866 + L1ME LINE L1 145 350 -5855 968 253 75 64 chr1 245488835 245489363 -36704301 + L1ME LINE L1 428 967 -5238 713 199 13 13 chr1 245489363 245489519 -36704145 + L1MB3 LINE L1 6025 6180 -3 968 253 75 64 chr1 245489519 245489694 -36703970 + L1ME LINE L1 967 1139 -5066 2217 93 0 7 chr1 245489790 245490091 -36703573 + AluSc SINE Alu 5 303 -6 44088 47 3 1 chr1 245490109 245496232 -36697432 + L1PA5 LINE L1 11 6146 -8 1091 247 103 43 chr1 245496243 245496440 -36697224 + L1ME LINE L1 1289 1473 -4923 387 0 0 0 chr1 245496440 245496483 -36697181 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1091 247 103 43 chr1 245496483 245496869 -36696795 + L1ME LINE L1 1473 1907 -4489 610 212 47 42 chr1 245496871 245497083 -36696581 + L1ME LINE L1 2161 2373 -4023 21 36 0 0 chr1 245497096 245497124 -36696540 + AT_rich Low_complexity Low_complexity 1 28 0 561 350 37 5 chr1 245497514 245497731 -36695933 + MIR SINE MIR 13 236 -26 181 294 0 59 chr1 245497882 245497950 -36695714 + L2 LINE L2 3250 3313 0 238 287 257 37 chr1 245498861 245498997 -36694667 - MIR3 SINE MIR -23 185 20 660 119 0 20 chr1 245499096 245499197 -36694467 - AluJo/FRAM SINE Alu -17 295 197 1728 151 0 7 chr1 245499197 245499475 -36694189 - AluJb SINE Alu -36 276 1 2094 116 0 3 chr1 245499483 245499777 -36693887 - AluSq SINE Alu -20 293 1 2392 150 27 42 chr1 245500694 245501475 -36692189 - L1MB7 LINE L1 -15 6169 5165 1909 137 4 0 chr1 245501475 245501753 -36691911 - AluSx SINE Alu -33 279 1 2392 150 27 42 chr1 245501753 245501797 -36691867 - L1MB7 LINE L1 -1019 5165 5122 1911 142 7 7 chr1 245502366 245502662 -36691002 - AluSx SINE Alu -16 296 1 2421 75 0 0 chr1 245502897 245503205 -36690459 - AluY SINE Alu -3 308 1 265 163 70 0 chr1 245503517 245503560 -36690104 - AluSg/x SINE Alu -123 177 132 1824 116 6 70 chr1 245503560 245503889 -36689775 - AluSx SINE Alu -4 308 1 273 290 32 75 chr1 245504085 245504271 -36689393 - L2 LINE L2 -54 3259 3082 476 265 109 20 chr1 245504463 245504651 -36689013 + MIR SINE MIR 7 210 -52 1087 175 0 0 chr1 245504665 245504842 -36688822 + AluJo SINE Alu 9 185 -127 225 0 0 0 chr1 245504903 245504928 -36688736 + (A)n Simple_repeat Simple_repeat 1 25 0 212 189 0 0 chr1 245504982 245505019 -36688645 + (TTA)n Simple_repeat Simple_repeat 1 37 0 1867 144 10 0 chr1 245505032 245505324 -36688340 + AluSx SINE Alu 1 295 -17 2476 165 27 47 chr1 245505787 245506302 -36687362 + MLT1D LTR MaLR 1 505 0 664 174 0 0 chr1 245506445 245506554 -36687110 - FLAM_C SINE Alu -10 133 25 955 99 8 0 chr1 245506590 245506721 -36686943 + AluSq/x SINE Alu 1 132 -180 2054 110 0 10 chr1 245506971 245507261 -36686403 - AluSx SINE Alu -21 291 5 32 26 0 0 chr1 245507895 245507934 -36685730 + AT_rich Low_complexity Low_complexity 1 39 0 2214 87 0 13 chr1 245508673 245508973 -36684691 + AluY SINE Alu 2 297 -14 1519 146 167 0 chr1 245509170 245509458 -36684206 + MER7A DNA MER2_type 1 334 -12 2250 87 0 7 chr1 245509491 245509789 -36683875 - AluSx SINE Alu -16 296 1 452 303 138 83 chr1 245509904 245510001 -36683663 - L2 LINE L2 0 3272 3182 2271 125 18 12 chr1 245510001 245510336 -36683328 + MER1B DNA MER1_type 1 337 0 452 303 138 83 chr1 245510336 245510673 -36682991 - L2 LINE L2 -90 3182 2814 * 651 282 146 51 chr1 245510641 245511148 -36682516 - L2 LINE L2 -825 2489 1935 284 247 43 21 chr1 245511736 245511829 -36681835 - MIR SINE MIR -71 191 97 2412 174 29 18 chr1 245511842 245512295 -36681369 - MLT1C LTR MaLR -9 458 1 250 349 12 12 chr1 245512295 245512381 -36681283 - MIR SINE MIR -164 98 13 187 240 40 0 chr1 245512579 245512629 -36681035 + MIR SINE MIR 103 154 -108 2257 110 0 0 chr1 245512986 245513295 -36680369 + AluSq SINE Alu 1 309 -4 829 272 23 2 chr1 245513941 245514178 -36679486 - MIR SINE MIR 0 262 24 308 308 83 8 chr1 245516324 245516457 -36677207 - MIR SINE MIR -5 257 115 289 208 0 0 chr1 245517127 245517180 -36676484 + L2 LINE L2 3261 3313 0 315 175 48 0 chr1 245517296 245517359 -36676305 - MIR3 SINE MIR -3 205 140 261 269 19 65 chr1 245517460 245517568 -36676096 - L2 LINE L2 -47 3266 3164 * 1397 238 33 46 chr1 245517562 245517837 -36675827 + L2 LINE L2 1783 2060 -1254 3144 146 17 37 chr1 245517837 245518038 -36675626 + LTR26B LTR ERV1 1 205 -326 2270 94 0 45 chr1 245518038 245518346 -36675318 + AluSq SINE Alu 1 294 -19 3144 146 17 37 chr1 245518346 245518686 -36674978 + LTR26B LTR ERV1 205 531 0 1397 238 33 46 chr1 245518686 245518762 -36674902 + L2 LINE L2 2060 2135 -1179 2070 141 0 16 chr1 245518762 245519075 -36674589 - AluSx SINE Alu -4 308 1 1397 238 33 46 chr1 245519075 245519180 -36674484 + L2 LINE L2 2135 2234 -1080 947 123 61 6 chr1 245519188 245519351 -36674313 + MLT1C LTR MaLR 10 181 -286 370 252 69 23 chr1 245519393 245519524 -36674140 - L2 LINE L2 -258 3055 2919 2615 127 53 32 chr1 245519570 245520042 -36673622 - LTR8A LTR ERV1 0 727 246 650 264 167 18 chr1 245520034 245520209 -36673455 + LTR33A LTR ERVL 122 270 -253 * 2424 97 0 3 chr1 245520209 245520518 -36673146 + AluSp SINE Alu 2 309 -4 650 264 167 18 chr1 245520518 245520671 -36672993 + LTR33A LTR ERVL 270 499 -24 1210 70 13 0 chr1 245520671 245520827 -36672837 + L1PA10 LINE L1 6007 6164 -4 187 250 155 43 chr1 245520977 245521093 -36672571 + L3 LINE CR1 1288 1416 -161 441 271 206 5 chr1 245521433 245521632 -36672032 + MIR SINE MIR 3 241 -21 * 2017 230 103 6 chr1 245521627 245522141 -36671523 + L2 LINE L2 2065 2628 -686 738 223 122 75 chr1 245522183 245522699 -36670965 + MER41D LTR ERV1 1 557 0 553 235 25 117 chr1 245522720 245523131 -36670533 + MER41D-int LTR ERV1 21 1028 -5819 2174 107 4 0 chr1 245523260 245523569 -36670095 - AluSx SINE Alu 0 310 1 19600 212 38 52 chr1 245523656 245523932 -36669732 + MER41C-int LTR ERV1 663 941 -6815 852 137 0 58 chr1 245523932 245524071 -36669593 + FLAM_C SINE Alu 1 131 -2 19600 212 38 52 chr1 245524071 245526008 -36667656 + MER41C-int LTR ERV1 941 2904 -4852 568 138 0 0 chr1 245526008 245526095 -36667569 - AluSc SINE Alu -3 306 220 19600 212 38 52 chr1 245526095 245526978 -36666686 + MER41C-int LTR ERV1 2904 3798 -3958 1770 164 10 32 chr1 245526978 245527289 -36666375 - AluJo SINE Alu -8 304 1 19600 212 38 52 chr1 245527289 245528212 -36665452 + MER41C-int LTR ERV1 3798 4689 -3067 2287 105 19 29 chr1 245528212 245528527 -36665137 + AluSx SINE Alu 1 312 0 19600 212 38 52 chr1 245528527 245529376 -36664288 + MER41C-int LTR ERV1 4689 5549 -2207 11470 198 33 15 chr1 245529379 245531050 -36662614 + MER41C-int LTR ERV1 5335 7065 -691 1289 197 45 91 chr1 245531050 245531522 -36662142 - LTR7 LTR ERV1 0 450 1 11470 198 33 15 chr1 245531522 245532224 -36661440 + MER41C-int LTR ERV1 7065 7752 -4 515 236 63 8 chr1 245532228 245532355 -36661309 + MER41C LTR ERV1 1 134 -420 448 227 42 0 chr1 245532633 245532752 -36660912 + MER41D LTR ERV1 432 555 -2 861 265 129 60 chr1 245532760 245533050 -36660614 + L2 LINE L2 2752 3020 -293 1904 131 19 32 chr1 245533050 245533362 -36660302 + AluSx SINE Alu 3 310 -2 861 265 129 60 chr1 245533362 245533575 -36660089 + L2 LINE L2 3020 3313 0 25 31 0 0 chr1 245534076 245534108 -36659556 + GC_rich Low_complexity Low_complexity 1 32 0 33 25 0 0 chr1 245534352 245534392 -36659272 + GC_rich Low_complexity Low_complexity 1 40 0 311 141 254 0 chr1 245535031 245535102 -36658562 - MIR3 SINE MIR -3 205 117 1181 218 224 50 chr1 245535397 245535875 -36657789 + MER68 LTR ERV1 2 562 0 192 147 0 0 chr1 245535931 245535965 -36657699 - L2 LINE L2 -1364 1950 1917 348 250 42 0 chr1 245536160 245536256 -36657408 - MER94 DNA DNA -20 114 15 292 263 164 0 chr1 245536262 245536363 -36657301 + MIR SINE MIR 45 160 -48 390 203 14 0 chr1 245536403 245536472 -36657192 - Tigger2a DNA MER2_type 0 444 375 806 199 19 0 chr1 245536472 245536628 -36657036 - FAM SINE Alu -14 171 13 1860 103 105 40 chr1 245536631 245536666 -36656998 - Tigger2a DNA MER2_type -2333 375 344 1915 170 10 0 chr1 245536666 245536972 -36656692 - AluJo SINE Alu -3 309 1 1860 103 105 40 chr1 245536972 245537287 -36656377 - Tigger2a DNA MER2_type -2364 344 2 764 201 189 69 chr1 245537287 245537435 -36656229 - MLT2C1 LTR ERVL -42 355 226 2347 107 0 0 chr1 245537435 245537735 -36655929 - AluSg1 SINE Alu -9 300 1 764 201 189 69 chr1 245537735 245537903 -36655761 - MLT2C1 LTR ERVL -171 226 1 910 122 0 43 chr1 245537928 245538067 -36655597 + FLAM_C SINE Alu 1 133 0 227 203 31 156 chr1 245538069 245538197 -36655467 + MIR SINE MIR 151 262 0 1060 230 28 79 chr1 245538241 245538597 -36655067 + MER46C DNA MER2_type 1 338 0 915 124 0 29 chr1 245538999 245539136 -36654528 + FLAM_C SINE Alu 1 133 0 468 303 48 7 chr1 245539498 245539643 -36654021 + MIR SINE MIR 20 170 -92 403 149 0 0 chr1 245539644 245539711 -36653953 - Alu SINE Alu -6 305 239 2161 98 52 0 chr1 245539745 245540032 -36653632 - AluSx SINE Alu -10 302 1 2275 92 0 30 chr1 245540379 245540682 -36652982 + AluSp SINE Alu 2 295 -18 1972 110 3 73 chr1 245540690 245541007 -36652657 + AluSx SINE Alu 2 296 -16 2432 115 0 0 chr1 245541097 245541409 -36652255 + AluSx SINE Alu 1 312 0 21 36 0 0 chr1 245541471 245541499 -36652165 + AT_rich Low_complexity Low_complexity 1 28 0 347 204 21 32 chr1 245541847 245541940 -36651724 + MIR SINE MIR 79 170 -92 324 306 39 67 chr1 245542468 245542631 -36651033 + L1ME4a LINE L1 5650 5805 -316 2307 89 0 3 chr1 245542631 245542923 -36650741 + AluSq SINE Alu 2 292 -21 324 306 39 67 chr1 245542923 245543014 -36650650 + L1ME4a LINE L1 5805 5897 -224 2275 112 0 0 chr1 245543144 245543439 -36650225 - AluSx SINE Alu -17 295 1 2183 96 3 7 chr1 245543857 245544168 -36649496 - AluSg1 SINE Alu 0 310 1 198 342 63 0 chr1 245544242 245544321 -36649343 + L2 LINE L2 2715 2798 -516 1929 138 61 10 chr1 245544520 245544817 -36648847 - AluSx SINE Alu 0 312 1 1966 137 13 26 chr1 245544889 245545195 -36648469 + AluJb SINE Alu 1 302 -10 450 0 0 0 chr1 245545646 245545696 -36647968 + (TG)n Simple_repeat Simple_repeat 2 51 0 2232 125 0 0 chr1 245546100 245546395 -36647269 + AluSx SINE Alu 1 295 -17 296 216 134 10 chr1 245547385 245547482 -36646182 + L1ME4a LINE L1 6013 6121 0 518 194 141 84 chr1 245547841 245548032 -36645632 + MER20 DNA MER1_type 18 219 0 360 303 28 45 chr1 245548128 245548306 -36645358 - MER5A DNA MER1_type -12 177 3 215 300 223 23 chr1 245549093 245549223 -36644441 + L2 LINE L2 2994 3149 -123 1225 175 38 0 chr1 245549921 245550132 -36643532 + AluJo SINE Alu 2 220 -92 498 140 32 54 chr1 245550150 245550243 -36643421 - MER81 DNA DNA -4 110 20 186 286 0 63 chr1 245550396 245550459 -36643205 + L2 LINE L2 3204 3262 -10 2190 87 4 4 chr1 245550735 245551011 -36642653 + AluSx SINE Alu 1 276 -36 288 0 0 0 chr1 245551014 245551046 -36642618 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 413 306 30 34 chr1 245551938 245552173 -36641491 + LTR16C LTR ERVL 258 491 0 249 255 43 112 chr1 245552276 245552437 -36641227 - MLT1F LTR MaLR -2 588 439 254 221 78 0 chr1 245552456 245552533 -36641131 - MLT1F LTR MaLR -217 325 243 585 314 39 15 chr1 245552788 245552992 -36640672 + MIR SINE MIR 21 229 -33 466 297 159 40 chr1 245553569 245553845 -36639819 + L2 LINE L2 2925 3233 -39 246 81 0 0 chr1 245555542 245555579 -36638085 + (TG)n Simple_repeat Simple_repeat 2 38 0 1844 131 35 0 chr1 245555581 245555840 -36637824 - AluSx SINE Alu -44 268 1 207 0 0 0 chr1 245555849 245555872 -36637792 + (T)n Simple_repeat Simple_repeat 1 23 0 741 167 37 43 chr1 245556404 245556566 -36637098 + LTR54 LTR ERV1 1 161 -349 819 215 29 5 chr1 245556603 245556812 -36636852 + LTR54 LTR ERV1 297 510 0 726 234 164 9 chr1 245557592 245557818 -36635846 - MIR SINE MIR 0 262 2 262 300 88 0 chr1 245557828 245557908 -36635756 - MER5B DNA MER1_type -75 103 17 302 296 157 0 chr1 245558253 245558368 -36635296 - L2 LINE L2 -4 3268 3136 863 218 211 21 chr1 245558985 245559400 -36634264 + LTR50 LTR ERVL 44 628 -167 184 259 37 0 chr1 245560041 245560095 -36633569 - L2 LINE L2 -16 3256 3201 3694 128 6 22 chr1 245560352 245560983 -36632681 - L1MA10 LINE L1 -4 6330 5710 303 260 14 0 chr1 245562119 245562192 -36631472 - MIR SINE MIR -108 154 81 261 301 26 12 chr1 245562343 245562447 -36631217 - MER5B DNA MER1_type -2 176 81 2927 219 28 25 chr1 245562470 245562810 -36630854 + MER82 DNA MER2_type 2 346 -307 2353 91 0 3 chr1 245562810 245563128 -36630536 - L1PB1 LINE L1 0 6151 5835 2927 219 28 25 chr1 245563128 245563437 -36630227 + MER82 DNA MER2_type 346 653 0 464 195 0 0 chr1 245564568 245564655 -36629009 + MER82 DNA MER2_type 240 326 -327 390 173 0 0 chr1 245565763 245565838 -36627826 + (TG)n Simple_repeat Simple_repeat 1 75 0 219 273 114 0 chr1 245566718 245566806 -36626858 + MIR SINE MIR 20 117 -145 1495 133 99 128 chr1 245567067 245567145 -36626519 - MSTB1 LTR MaLR 0 432 353 2128 133 0 3 chr1 245567145 245567438 -36626226 + AluSx SINE Alu 1 292 -20 1495 133 99 128 chr1 245567438 245567804 -36625860 - MSTB1 LTR MaLR -79 353 1 248 223 29 68 chr1 245569225 245569328 -36624336 + LTR33 LTR ERVL 200 298 -223 210 242 129 0 chr1 245569465 245569527 -36624137 + MIR SINE MIR 14 83 -179 898 124 0 0 chr1 245569802 245569931 -36623733 - AluSg/x SINE Alu -2 310 182 215 298 165 25 chr1 245569954 245570075 -36623589 + MIR SINE MIR 78 215 -47 284 291 35 0 chr1 245572014 245572100 -36621564 + MLT1K LTR MaLR 500 588 0 2201 104 0 3 chr1 245572648 245572966 -36620698 + AluSx SINE Alu 1 317 0 521 293 102 0 chr1 245572972 245573129 -36620535 + MIR3 SINE MIR 30 202 -6 609 351 81 7 chr1 245573320 245573628 -36620036 - L1ME4a LINE L1 -11 6110 5780 760 323 17 4 chr1 245574158 245574390 -36619274 + MIR SINE MIR 3 237 -25 216 294 135 8 chr1 245574503 245574629 -36619035 + L2 LINE L2 3149 3290 -23 776 216 64 6 chr1 245575417 245575588 -36618076 - MIR SINE MIR -21 241 61 1788 173 46 71 chr1 245575606 245575970 -36617694 + MSTC LTR MaLR 1 354 -74 1662 76 0 0 chr1 245575970 245576167 -36617497 - AluY SINE Alu -114 197 1 1788 173 46 71 chr1 245576167 245576241 -36617423 + MSTC LTR MaLR 354 428 0 445 219 89 0 chr1 245576285 245576408 -36617256 - MIR SINE MIR -59 203 70 180 245 113 0 chr1 245576833 245576886 -36616778 - MIR3 SINE MIR -6 202 144 277 251 101 134 chr1 245577832 245577952 -36615712 - MIR SINE MIR -2 260 146 2456 96 0 3 chr1 245577952 245578265 -36615399 - AluSq SINE Alu -1 312 1 277 251 101 134 chr1 245578265 245578323 -36615341 - MIR SINE MIR -116 146 88 328 328 57 25 chr1 245578327 245578449 -36615215 + L2 LINE L2 3188 3313 0 207 0 0 0 chr1 245578767 245578790 -36614874 + (A)n Simple_repeat Simple_repeat 1 23 0 1994 70 92 11 chr1 245579352 245579625 -36614039 - AluY SINE Alu -16 295 1 343 287 222 26 chr1 245580054 245580284 -36613380 + L3b LINE CR1 1236 1510 -73 560 150 70 0 chr1 245580303 245580403 -36613261 + MER5A DNA MER1_type 4 110 -79 2365 75 0 14 chr1 245580408 245580703 -36612961 + AluY SINE Alu 1 291 -20 3671 62 7 0 chr1 245580790 245581240 -36612424 + MLT2A2 LTR ERVL 1 453 0 1387 155 83 114 chr1 245581881 245582267 -36611397 - MLT1A2 LTR MaLR 0 374 1 541 266 176 52 chr1 245582532 245582765 -36610899 + MIR SINE MIR 1 262 0 610 295 35 71 chr1 245583556 245583810 -36609854 + L2 LINE L2 3027 3271 -1 195 100 0 0 chr1 245583835 245583865 -36609799 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2383 101 0 0 chr1 245583867 245584175 -36609489 + AluY SINE Alu 1 308 -3 249 253 133 0 chr1 245585721 245585804 -36607860 - L2 LINE L2 -5 3267 3174 344 243 54 109 chr1 245585995 245586073 -36607591 + L1MC4 LINE L1 7600 7681 -361 1076 162 31 0 chr1 245586073 245586264 -36607400 + L1PB3 LINE L1 5951 6147 -7 344 243 54 109 chr1 245586264 245586498 -36607166 + L1MC4 LINE L1 7681 7895 -147 312 229 16 0 chr1 245586622 245586683 -36606981 - L2 LINE L2 0 3313 3252 2189 90 10 55 chr1 245586878 245587188 -36606476 + AluSc SINE Alu 1 296 -13 197 273 36 55 chr1 245587208 245587318 -36606346 + L2 LINE L2 2813 2920 -352 1888 158 0 10 chr1 245587674 245587971 -36605693 - AluSx SINE Alu -16 296 3 2307 117 0 3 chr1 245588239 245588539 -36605125 - AluSx SINE Alu -11 301 3 245 289 97 9 chr1 245588665 245588893 -36604771 - L1M4 LINE L1 -1899 4247 4000 313 277 36 0 chr1 245589230 245589313 -36604351 - L2 LINE L2 0 3272 3187 2132 128 0 10 chr1 245589313 245589626 -36604038 + AluY SINE Alu 1 310 -1 345 189 147 21 chr1 245589646 245589741 -36603923 + MIR SINE MIR 136 242 -20 627 264 84 8 chr1 245589747 245589963 -36603701 + MIR SINE MIR 2 227 -35 2239 111 0 10 chr1 245589992 245590298 -36603366 + AluSc SINE Alu 6 308 -1 310 204 97 29 chr1 245591100 245591203 -36602461 - HAL1b LINE L1 -24 1324 1215 400 216 82 21 chr1 245591321 245591418 -36602246 + MIR SINE MIR 43 145 -63 2191 98 0 0 chr1 245591425 245591700 -36601964 + AluSx SINE Alu 1 275 -37 209 81 0 27 chr1 245591705 245591742 -36601922 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 655 356 20 8 chr1 245593446 245593693 -36599971 - MIR SINE MIR -1 261 12 563 117 0 222 chr1 245594030 245594201 -36599463 + FLAM_C SINE Alu 1 133 0 810 153 0 29 chr1 245594461 245594598 -36599066 + FLAM_C SINE Alu 1 133 0 409 173 27 135 chr1 245594885 245595070 -36598594 + MER112 DNA MER1_type 6 170 -90 264 238 40 27 chr1 245595548 245595675 -36597989 + MIR SINE MIR 6 176 -86 7104 47 10 5 chr1 245596174 245597529 -36596135 - L1PA6 LINE L1 0 6154 4797 1865 145 50 7 chr1 245598057 245598354 -36595310 - AluJb SINE Alu -2 310 1 1100 172 0 0 chr1 245598354 245598517 -36595147 - FRAM SINE Alu -13 163 1 1785 147 139 29 chr1 245598518 245598927 -36594737 - LTR54B LTR ERV1 -44 454 1 390 264 31 31 chr1 245598981 245599110 -36594554 - LTR67 LTR ERVL 0 557 429 440 205 0 24 chr1 245599235 245599318 -36594346 - AluJb SINE Alu -83 229 149 1145 157 0 0 chr1 245599951 245600123 -36593541 + AluJb SINE Alu 138 309 -3 442 209 158 7 chr1 245600382 245600521 -36593143 - MER53 DNA DNA -4 185 26 422 152 27 98 chr1 245600526 245600638 -36593026 + MER21B LTR ERV1 1 104 -759 * 1411 271 61 21 chr1 245600636 245601012 -36592652 + MER21B LTR ERV1 20 498 -433 584 149 11 0 chr1 245601054 245601148 -36592516 - FLAM_A SINE Alu -20 122 28 1432 211 83 17 chr1 245601159 245601520 -36592144 + MER21B LTR ERV1 427 811 -52 233 62 0 0 chr1 245601550 245601582 -36592082 - MER53 DNA DNA -156 33 2 2190 140 0 9 chr1 245601625 245601940 -36591724 + AluSx SINE Alu 1 312 0 2008 105 44 24 chr1 245602159 245602453 -36591211 - AluSx SINE Alu -12 300 1 245 325 53 44 chr1 245602467 245602673 -36590991 - L2 LINE L2 -20 3252 3045 2181 133 0 0 chr1 245604067 245604369 -36589295 + AluSq SINE Alu 1 302 -11 253 306 33 16 chr1 245604688 245604809 -36588855 + LTR33 LTR ERVL 393 515 -6 489 266 32 27 chr1 245604865 245604947 -36588717 + MER112 DNA MER1_type 66 146 -114 2202 127 7 0 chr1 245604947 245605247 -36588417 - AluSq SINE Alu -11 302 1 489 266 32 27 chr1 245605247 245605352 -36588312 + MER112 DNA MER1_type 146 254 -6 545 316 32 11 chr1 245606144 245606334 -36587330 - MIR SINE MIR -14 248 54 932 162 0 36 chr1 245607481 245607498 -36586166 - FRAM SINE Alu -146 166 150 337 100 0 0 chr1 245607498 245607558 -36586106 - L1MA7 LINE L1 0 6291 6232 932 162 0 36 chr1 245607558 245607707 -36585957 - FRAM SINE Alu -162 150 6 271 95 24 0 chr1 245607711 245607753 -36585911 - L1MA6 LINE L1 -46 6254 6212 2387 85 3 0 chr1 245608170 245608463 -36585201 - AluSp SINE Alu -17 296 3 210 342 79 26 chr1 245609885 245609999 -36583665 - L2 LINE L2 -15 3298 3179 838 232 37 16 chr1 245610112 245610302 -36583362 + MIR SINE MIR 56 249 -13 270 344 43 0 chr1 245612064 245612157 -36581507 + MIR SINE MIR 50 146 -116 520 250 56 120 chr1 245612309 245612777 -36580887 + MLT1J LTR MaLR 1 438 -73 649 230 25 12 chr1 245612940 245613101 -36580563 + L1MC4a LINE L1 5640 5802 -2006 1176 176 13 88 chr1 245613101 245613194 -36580470 + MER58B DNA MER1_type 48 146 -2274 2018 112 14 11 chr1 245613194 245613480 -36580184 - AluSx SINE Alu -25 287 1 1176 176 13 88 chr1 245613480 245613693 -36579971 + MER58B DNA MER1_type 146 331 -10 300 215 89 0 chr1 245613764 245613843 -36579821 + L1MC4a LINE L1 6074 6159 -1649 35 0 0 0 chr1 245613862 245613897 -36579767 + AT_rich Low_complexity Low_complexity 1 35 0 769 161 0 0 chr1 245613897 245614015 -36579649 - FLAM_C SINE Alu -15 118 1 282 260 133 40 chr1 245614378 245614551 -36579113 + MIR3 SINE MIR 4 192 -16 3234 218 53 32 chr1 245615203 245615753 -36577911 + L1MC4a LINE L1 6854 7435 -373 1801 161 0 11 chr1 245615753 245616092 -36577572 + AluJo SINE Alu 1 336 0 3234 218 53 32 chr1 245616092 245616474 -36577190 + L1MC4a LINE L1 7435 7807 -1 220 241 111 0 chr1 245616553 245616607 -36577057 + L2 LINE L2 3127 3186 -86 736 301 122 35 chr1 245616663 245617313 -36576351 + L2 LINE L2 2367 3087 -226 2055 161 60 8 chr1 245617329 245617695 -36575969 - MLT1C LTR MaLR 0 467 83 375 87 0 0 chr1 245617697 245617779 -36575885 + Alu SINE Alu 236 317 0 287 212 30 81 chr1 245617883 245617982 -36575682 + L2 LINE L2 3123 3216 -97 271 292 15 0 chr1 245618211 245618276 -36575388 + L2 LINE L2 3247 3312 -1 410 222 170 62 chr1 245618364 245618558 -36575106 + MIR SINE MIR 31 245 -17 218 333 20 10 chr1 245619217 245619316 -36574348 + MIR SINE MIR 33 132 -76 2393 239 150 31 chr1 245619456 245619697 -36573967 - L2 LINE L2 0 3313 3102 2009 144 0 3 chr1 245619697 245620010 -36573654 - AluSx SINE Alu 0 312 1 2393 239 150 31 chr1 245620010 245620898 -36572766 - L2 LINE L2 -211 3102 2052 1921 202 18 18 chr1 245621620 245622016 -36571648 + MSTD LTR MaLR 1 396 0 355 279 148 8 chr1 245622213 245622335 -36571329 - MIR SINE MIR -108 154 16 214 191 0 0 chr1 245622372 245622414 -36571250 - MIR SINE MIR -63 145 104 207 0 0 0 chr1 245623288 245623311 -36570353 + (CATA)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr1 245623317 245623366 -36570298 + (TG)n Simple_repeat Simple_repeat 2 50 0 288 251 166 43 chr1 245623577 245623764 -36569900 + MLT1J1 LTR MaLR 101 310 -136 1986 113 32 0 chr1 245623824 245624107 -36569557 + AluSq SINE Alu 1 292 -21 778 266 94 34 chr1 245624561 245624836 -36568828 + MLT1H LTR MaLR 21 278 -271 1057 177 101 10 chr1 245624836 245625034 -36568630 + MER20 DNA MER1_type 1 216 -3 778 266 94 34 chr1 245625034 245625216 -36568448 + MLT1H LTR MaLR 278 549 0 533 230 108 14 chr1 245625373 245625512 -36568152 - MIR SINE MIR -27 235 84 228 250 172 0 chr1 245625573 245625637 -36568027 - MIR SINE MIR -165 97 23 399 257 55 28 chr1 245625837 245625946 -36567718 + MIR SINE MIR 34 145 -117 274 258 10 41 chr1 245625978 245626075 -36567589 - L2 LINE L2 -51 3262 3169 2160 109 8 42 chr1 245626289 245626413 -36567251 - L1PB1 LINE L1 -5 6146 6019 2002 118 20 0 chr1 245626413 245626709 -36566955 - AluSx SINE Alu -10 302 1 2160 109 8 42 chr1 245626709 245626942 -36566722 - L1PB1 LINE L1 -132 6019 5801 614 247 121 0 chr1 245627125 245627299 -36566365 + MIR SINE MIR 2 196 -66 372 251 60 36 chr1 245627566 245627733 -36565931 - L1ME4a LINE L1 -16 6105 5935 469 295 76 55 chr1 245628301 245628538 -36565126 - MIR SINE MIR -1 261 20 320 261 45 68 chr1 245628560 245628736 -36564928 - HAL1 LINE L1 -2 2505 2334 2296 93 7 0 chr1 245628736 245629046 -36564618 - AluSx SINE Alu 0 312 1 896 198 24 107 chr1 245629413 245629751 -36563913 - HAL1 LINE L1 -845 1662 1353 407 256 248 74 chr1 245629752 245629923 -36563741 - HAL1 LINE L1 -1398 1109 969 2478 60 0 6 chr1 245629923 245630237 -36563427 - AluSq SINE Alu -1 312 1 407 256 248 74 chr1 245630237 245630808 -36562856 - HAL1 LINE L1 -1538 969 238 288 0 0 0 chr1 245630980 245631012 -36562652 + (T)n Simple_repeat Simple_repeat 1 32 0 428 260 139 40 chr1 245631046 245631484 -36562180 - MLT1H1 LTR MaLR -7 548 14 503 253 155 29 chr1 245631728 245631836 -36561828 + MIR SINE MIR 34 127 -135 1796 154 3 3 chr1 245631836 245632129 -36561535 + AluJb SINE Alu 1 293 -19 503 253 155 29 chr1 245632129 245632194 -36561470 + MIR SINE MIR 127 229 -33 346 312 0 0 chr1 245632325 245632418 -36561246 + MIR SINE MIR 160 252 -10 193 29 29 29 chr1 245632751 245632786 -36560878 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 246 260 55 14 chr1 245633927 245634000 -36559664 - MIR SINE MIR -82 180 105 351 314 137 7 chr1 245634082 245634235 -36559429 + MIR SINE MIR 13 185 -77 318 300 71 0 chr1 245634415 245634555 -36559109 - MIR SINE MIR -65 197 48 282 29 0 0 chr1 245635745 245635780 -36557884 + (CCCCG)n Simple_repeat Simple_repeat 2 36 0 317 259 38 30 chr1 245636191 245636322 -36557342 + L3b LINE CR1 1103 1234 -349 1579 150 30 0 chr1 245636442 245636770 -36556894 - AluJo SINE Alu 0 372 37 532 323 96 46 chr1 245636786 245637223 -36556441 - L2 LINE L2 -4 3268 2810 989 124 5 87 chr1 245637386 245637571 -36556093 + MER20 DNA MER1_type 1 170 -49 589 204 32 96 chr1 245637995 245638065 -36555599 + L2 LINE L2 3101 3174 -139 2139 117 0 10 chr1 245638065 245638374 -36555290 - AluSq SINE Alu -7 306 1 589 204 32 96 chr1 245638374 245638523 -36555141 + L2 LINE L2 3174 3306 -7 1740 178 10 0 chr1 245638523 245638832 -36554832 + AluJo SINE Alu 1 312 0 1685 184 10 0 chr1 245639745 245640044 -36553620 + AluJo SINE Alu 5 306 -6 22 70 0 0 chr1 245640366 245640409 -36553255 + AT_rich Low_complexity Low_complexity 1 43 0 430 309 33 0 chr1 245640460 245640612 -36553052 - MIR SINE MIR -73 189 33 338 0 0 0 chr1 245640643 245640688 -36552976 + AluY SINE Alu 256 300 0 431 328 43 14 chr1 245641231 245641395 -36552269 - MIR SINE MIR -53 209 42 1799 156 20 0 chr1 245641469 245641764 -36551900 + AluJb SINE Alu 1 301 -11 2215 83 7 3 chr1 245642103 245642393 -36551271 + AluSc SINE Alu 1 291 -18 202 347 57 16 chr1 245642656 245642780 -36550884 + L2 LINE L2 2849 2977 -337 225 0 0 0 chr1 245643046 245643071 -36550593 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 299 314 105 67 chr1 245643436 245643911 -36549753 - L2 LINE L2 -457 2857 2365 264 186 0 0 chr1 245644680 245644739 -36548925 + (TA)n Simple_repeat Simple_repeat 2 60 0 943 164 153 0 chr1 245644739 245644928 -36548736 - AluSc SINE Alu -91 218 1 261 163 0 20 chr1 245645229 245645278 -36548386 + MIR SINE MIR 103 150 -112 269 177 258 0 chr1 245645522 245645584 -36548080 - MER81 DNA DNA 0 114 37 560 243 76 80 chr1 245645612 245645888 -36547776 - MLT1J LTR MaLR -140 371 97 235 315 45 45 chr1 245645996 245646107 -36547557 - L2 LINE L2 -22 3250 3140 211 163 23 0 chr1 245647703 245647746 -36545918 - MIR SINE MIR 0 262 219 526 229 25 8 chr1 245647965 245648087 -36545577 - MIR SINE MIR -54 208 85 419 293 79 6 chr1 245648167 245648331 -36545333 - MIR SINE MIR -59 203 28 360 0 0 0 chr1 245648666 245648706 -36544958 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr1 245650349 245650375 -36543289 + AT_rich Low_complexity Low_complexity 1 26 0 182 233 96 27 chr1 245650559 245650632 -36543032 - MIR SINE MIR -66 196 119 195 287 148 17 chr1 245650828 245650943 -36542721 - MIR SINE MIR -33 229 100 1691 146 114 0 chr1 245651834 245652142 -36541522 - MER2 DNA MER2_type -1 343 1 2576 99 10 48 chr1 245654013 245654405 -36539259 + MER51B LTR ERV1 1 377 0 193 337 113 54 chr1 245654851 245655355 -36538309 + L2 LINE L2 1750 2283 -1031 2065 133 0 3 chr1 245655355 245655655 -36538009 - AluSx SINE Alu -13 299 1 1087 165 14 46 chr1 245655659 245655877 -36537787 - AluJb SINE Alu -15 297 87 256 290 68 72 chr1 245655877 245656098 -36537566 + L2 LINE L2 2280 2499 -815 188 237 0 0 chr1 245656117 245656155 -36537509 - L2 LINE L2 -10 3262 3225 485 99 12 0 chr1 245656185 245656266 -36537398 + (GA)n Simple_repeat Simple_repeat 2 83 0 195 246 82 82 chr1 245656266 245656376 -36537288 - L2 LINE L2 -86 3227 3118 313 229 16 0 chr1 245656424 245656485 -36537179 - L2 LINE L2 0 3313 3252 2023 93 10 55 chr1 245656680 245656991 -36536673 + AluSc SINE Alu 1 297 -12 187 290 145 52 chr1 245657011 245657204 -36536460 + L2 LINE L2 2813 3023 -249 1757 155 0 10 chr1 245657477 245657774 -36535890 - AluSx SINE Alu -16 296 3 2200 117 0 0 chr1 245658042 245658341 -36535323 - AluSx SINE Alu -11 301 3 274 288 96 13 chr1 245658467 245658696 -36534968 - L1M4 LINE L1 -1899 4247 4000 990 246 54 136 chr1 245659033 245659116 -36534548 - L2 LINE L2 0 3313 3225 1692 94 0 0 chr1 245659116 245659340 -36534324 + AluY SINE Alu 1 224 -87 990 246 54 136 chr1 245659340 245659383 -36534281 - L2 LINE L2 -88 3225 3180 2206 108 0 19 chr1 245659383 245659697 -36533967 + AluSg SINE Alu 2 309 -1 990 246 54 136 chr1 245659697 245659803 -36533861 - L2 LINE L2 -133 3180 3067 2078 87 42 0 chr1 245659803 245660089 -36533575 + AluSq SINE Alu 1 298 -15 990 246 54 136 chr1 245660089 245660406 -36533258 - L2 LINE L2 -246 3067 2807 2184 103 3 3 chr1 245662074 245662386 -36531278 - AluSx SINE Alu 0 312 1 1470 171 34 0 chr1 245663047 245663310 -36530354 + AluJo SINE Alu 40 311 -1 437 254 116 48 chr1 245663366 245663555 -36530109 - MIR SINE MIR -2 260 59 202 365 67 0 chr1 245663987 245664091 -36529573 + L3b LINE CR1 1327 1437 -146 454 306 42 6 chr1 245664426 245664584 -36529080 + MIR3 SINE MIR 2 165 -43 1159 154 28 6 chr1 245664882 245665064 -36528600 + Tigger3(Golem) DNA MER2_type 2844 3029 0 1831 128 0 0 chr1 245665683 245665948 -36527716 + AluSx SINE Alu 1 265 -47 209 286 36 0 chr1 245666138 245666194 -36527470 - MIR3 SINE MIR -1 207 150 417 221 164 21 chr1 245667059 245667199 -36526465 - MIR3 SINE MIR -23 185 26 369 0 0 0 chr1 245667496 245667537 -36526127 + (CA)n Simple_repeat Simple_repeat 1 41 0 279 286 161 0 chr1 245667676 245667788 -36525876 - L2 LINE L2 -4 3268 3139 394 111 0 0 chr1 245668986 245669040 -36524624 + MADE1 DNA Mariner 1 54 -26 2401 84 3 3 chr1 245669060 245669371 -36524293 - AluSp SINE Alu -2 311 1 2025 141 0 0 chr1 245669903 245670200 -36523464 + AluSx SINE Alu 1 297 -15 527 152 0 10 chr1 245670208 245670307 -36523357 + GA-rich Low_complexity Low_complexity 3 100 0 186 133 0 0 chr1 245670348 245670378 -36523286 + (GGGTG)n Simple_repeat Simple_repeat 3 32 0 800 221 33 0 chr1 245671042 245671223 -36522441 - HAL1 LINE L1 -731 1776 1590 1622 168 16 16 chr1 245671518 245671688 -36521976 - AluJo SINE Alu -6 306 134 1976 152 0 0 chr1 245671688 245671978 -36521686 - AluSx SINE Alu -20 292 3 1622 168 16 16 chr1 245671978 245672110 -36521554 - AluJo SINE Alu -177 135 4 400 61 0 0 chr1 245672781 245672830 -36520834 - U6 snRNA snRNA -58 49 1 655 35 0 59 chr1 245672870 245672955 -36520709 + MADE1 DNA Mariner 1 80 0 816 258 115 0 chr1 245673090 245673342 -36520322 - LTR33 LTR ERVL -38 483 203 291 215 20 101 chr1 245673342 245673491 -36520173 + MER57-int LTR ERV1 4304 4440 -2318 1278 133 6 0 chr1 245673494 245673675 -36519989 + AluSq SINE Alu 10 191 -122 952 108 0 0 chr1 245673676 245673796 -36519868 + AluSp/q SINE Alu 156 275 -38 207 0 0 0 chr1 245673803 245673826 -36519838 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 273 247 211 32 chr1 245673914 245674104 -36519560 - LTR48B LTR ERV1 -293 351 128 * 410 136 6 140 chr1 245674094 245674203 -36519461 - MER34 LTR ERV1 -439 146 1 2049 225 92 11 chr1 245674205 245674757 -36518907 + LTR48B LTR ERV1 1 597 -47 1354 175 93 57 chr1 245674758 245675112 -36518552 + MER57-int LTR ERV1 2871 3237 -1699 2219 88 35 0 chr1 245675450 245675734 -36517930 - AluSg1 SINE Alu -13 296 3 641 289 50 64 chr1 245676205 245676534 -36517130 + MER57-int LTR ERV1 6794 7081 -456 30 0 0 0 chr1 245676558 245676588 -36517076 + AT_rich Low_complexity Low_complexity 1 30 0 887 176 51 2 chr1 245676590 245676765 -36516899 + L1ME1 LINE L1 5993 6332 -2 207 0 0 0 chr1 245676791 245676814 -36516850 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1299 197 32 100 chr1 245677493 245677893 -36515771 + MLT2D LTR ERVL 1 373 -41 1254 146 24 5 chr1 245677893 245678106 -36515558 - Tigger1 DNA MER2_type 0 2418 2202 569 126 252 16 chr1 245678095 245678222 -36515442 - Tigger1 DNA MER2_type -2261 157 1 * 306 102 82 0 chr1 245678222 245678263 -36515401 + MLT2D LTR ERVL 471 515 0 21 57 0 0 chr1 245679547 245679582 -36514082 + GC_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr1 245679731 245679755 -36513909 + GC_rich Low_complexity Low_complexity 1 24 0 479 270 147 24 chr1 245680474 245680685 -36512979 - MIR SINE MIR -6 256 20 236 253 187 0 chr1 245681706 245681797 -36511867 - MIR SINE MIR -82 126 19 198 311 54 14 chr1 245682301 245682375 -36511289 + MIR SINE MIR 41 117 -91 878 129 0 0 chr1 245682959 245683075 -36510589 + FLAM_C SINE Alu 1 116 -27 2242 106 3 0 chr1 245683088 245683381 -36510283 - AluSp SINE Alu -19 294 1 1873 165 10 69 chr1 245683542 245683935 -36509729 - MLT1A2 LTR MaLR 0 374 5 503 220 40 100 chr1 245684028 245684100 -36509564 + Tigger3(Golem) DNA MER2_type 1 61 -1170 2124 135 0 3 chr1 245684100 245684412 -36509252 + AluSx SINE Alu 1 311 -1 503 220 40 100 chr1 245684412 245684489 -36509175 + Tigger3(Golem) DNA MER2_type 61 141 -1090 2321 102 0 0 chr1 245684491 245684786 -36508878 - AluSg SINE Alu -15 295 1 1954 108 0 0 chr1 245684793 245685051 -36508613 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 2531 149 12 5 chr1 245685051 245685460 -36508204 + L1MC1 LINE L1 5922 6333 0 351 296 84 0 chr1 245685540 245685682 -36507982 + MIR SINE MIR 79 232 -30 416 268 21 49 chr1 245686842 245686984 -36506680 + MIR3 SINE MIR 4 141 -67 346 264 55 11 chr1 245687081 245687172 -36506492 + MIR SINE MIR 53 147 -61 213 175 0 0 chr1 245687882 245687922 -36505742 + T-rich Low_complexity Low_complexity 1 40 0 3800 87 13 6 chr1 245688094 245688637 -36505027 - L1P LINE L1 -803 5343 4797 1274 128 16 0 chr1 245689163 245689351 -36504313 - AluSg/x SINE Alu -2 308 118 306 102 82 0 chr1 245690833 245690874 -36502790 - MLT2B2 LTR ERVL 0 515 471 569 126 252 16 chr1 245690874 245691001 -36502663 + Tigger1 DNA MER2_type 1 157 -2261 * 954 188 34 5 chr1 245690990 245691198 -36502466 + Tigger1 DNA MER2_type 2202 2415 -3 387 190 10 20 chr1 245691400 245691500 -36502164 + L1MA7 LINE L1 6188 6286 -5 396 281 123 54 chr1 245691506 245691746 -36501918 + L1M1 LINE L1 2744 2999 -927 2453 73 0 19 chr1 245691746 245692061 -36501603 + AluSc SINE Alu 1 309 0 396 281 123 54 chr1 245692061 245692080 -36501584 + L1M1 LINE L1 2999 3015 -911 453 309 103 45 chr1 245692705 245694140 -36499524 - L1M4 LINE L1 -1871 4275 2757 1628 281 117 71 chr1 245694152 245694806 -36498858 - L1M4 LINE L1 -903 5243 4620 280 81 0 0 chr1 245694806 245694843 -36498821 - tRNA-Gly-GGG tRNA tRNA -37 37 1 1628 281 117 71 chr1 245694843 245695979 -36497685 - L1M4 LINE L1 -1526 4620 3334 4743 112 20 38 chr1 245696113 245696902 -36496762 - L1MA8 LINE L1 -77 6214 5440 291 203 65 81 chr1 245696924 245697047 -36496617 - L1MEd LINE L1 -4875 1244 1124 239 211 19 0 chr1 245697131 245697183 -36496481 - L1MA8 LINE L1 -2 6289 6237 * 297 287 138 0 chr1 245697182 245697363 -36496301 - L1MEd LINE L1 -5014 1105 900 2363 91 0 0 chr1 245697773 245698060 -36495604 - AluSx SINE Alu -8 304 18 290 319 35 26 chr1 245698131 245698244 -36495420 + L2 LINE L2 3141 3254 -18 299 278 130 43 chr1 245698368 245698483 -36495181 + MIR SINE MIR 21 145 -63 486 201 113 88 chr1 245698488 245698626 -36495038 + MLT1I LTR MaLR 211 357 -52 2158 98 0 48 chr1 245698626 245698941 -36494723 + AluSc SINE Alu 1 300 -9 486 201 113 88 chr1 245698941 245698996 -36494668 + MLT1I LTR MaLR 357 409 0 1677 151 72 11 chr1 245699091 245699369 -36494295 - AluSx SINE Alu -17 295 1 2207 124 0 0 chr1 245699525 245699832 -36493832 - AluSx SINE Alu -5 307 1 21 0 0 0 chr1 245701102 245701123 -36492541 + AT_rich Low_complexity Low_complexity 1 21 0 191 229 21 0 chr1 245701394 245701442 -36492222 + MIR SINE MIR 116 164 -98 419 224 61 0 chr1 245701476 245701574 -36492090 + L2 LINE L2 3169 3272 0 269 188 159 29 chr1 245701789 245701858 -36491806 + Charlie1 DNA MER1_type 1570 1647 -1114 31 44 0 0 chr1 245702412 245702457 -36491207 + AT_rich Low_complexity Low_complexity 1 45 0 327 258 17 25 chr1 245702580 245702700 -36490964 + CT-rich Low_complexity Low_complexity 2 120 0 348 290 20 45 chr1 245703134 245703334 -36490330 - L1ME4a LINE L1 -286 5835 5641 303 238 119 0 chr1 245703822 245703906 -36489758 - L1ME2 LINE L1 -27 6137 6044 401 190 90 0 chr1 245703927 245704027 -36489637 + L1MB8 LINE L1 6070 6178 0 * 2895 207 38 27 chr1 245704020 245704731 -36488933 - L1ME2 LINE L1 -107 6057 5339 2000 104 14 24 chr1 245704856 245705168 -36488496 - AluSx SINE Alu 0 309 1 1260 50 19 0 chr1 245705173 245705333 -36488331 - AluY SINE Alu -15 296 134 450 0 0 0 chr1 245705438 245705488 -36488176 + (TG)n Simple_repeat Simple_repeat 2 51 0 2210 125 0 0 chr1 245705892 245706189 -36487475 + AluSx SINE Alu 1 297 -15 317 216 134 10 chr1 245707179 245707276 -36486388 + L1ME4a LINE L1 6013 6121 0 532 199 141 84 chr1 245707635 245707826 -36485838 + MER20 DNA MER1_type 18 219 0 345 288 31 49 chr1 245707937 245708100 -36485564 - MER5A DNA MER1_type -27 162 3 208 300 223 23 chr1 245708886 245709016 -36484648 + L2 LINE L2 2994 3149 -123 1186 175 38 0 chr1 245709714 245709925 -36483739 + AluJo SINE Alu 2 220 -92 545 105 21 63 chr1 245709943 245710038 -36483626 - MER81 DNA DNA -4 110 20 2300 79 3 3 chr1 245710529 245710821 -36482843 + AluSq SINE Alu 1 292 -21 2232 112 0 0 chr1 245711042 245711337 -36482327 - AluSx SINE Alu -17 295 1 2153 96 3 7 chr1 245711756 245712067 -36481597 - AluSg1 SINE Alu 0 310 1 197 342 63 0 chr1 245712141 245712220 -36481444 + L2 LINE L2 2715 2798 -516 1471 174 4 4 chr1 245712543 245712790 -36480874 + PRIMA41-int LTR ERV1 2656 2902 -4854 596 129 0 0 chr1 245712790 245712875 -36480789 - AluSc SINE Alu -5 304 220 8094 216 18 26 chr1 245712879 245713758 -36479906 + PRIMA41-int LTR ERV1 2925 3809 -3947 1693 144 26 49 chr1 245713758 245714064 -36479600 - AluJo SINE Alu -8 304 6 8094 216 18 26 chr1 245714064 245714990 -36478674 + PRIMA41-int LTR ERV1 3804 4717 -3034 1952 130 25 0 chr1 245714990 245715266 -36478398 + AluSq SINE Alu 1 283 -30 402 271 206 5 chr1 245715381 245715580 -36478084 + MIR SINE MIR 3 241 -21 * 1963 224 107 10 chr1 245715575 245716089 -36477575 + L2 LINE L2 2065 2628 -686 793 223 118 70 chr1 245716131 245716647 -36477017 + MER41D LTR ERV1 1 557 0 583 200 13 109 chr1 245716668 245716918 -36476746 + MER41D-int LTR ERV1 21 1028 -5819 2134 107 4 0 chr1 245717208 245717517 -36476147 - AluSx SINE Alu 0 310 1 6945 208 66 68 chr1 245717604 245717880 -36475784 + PRIMA41-int LTR ERV1 663 938 -6818 884 137 0 58 chr1 245717880 245718019 -36475645 + FLAM_C SINE Alu 1 131 -2 6945 208 66 68 chr1 245718019 245719662 -36474002 + PRIMA41-int LTR ERV1 938 2591 -5165 755 206 80 0 chr1 245719817 245719992 -36473672 + MER53 DNA DNA 1 189 0 316 206 93 10 chr1 245720616 245720713 -36472951 - MIR SINE MIR -63 145 41 206 318 82 24 chr1 245720875 245720960 -36472704 + MIR SINE MIR 4 93 -169 879 154 14 0 chr1 245720968 245721111 -36472553 - FAM SINE Alu -5 44 1 990 256 52 7 chr1 245721123 245721412 -36472252 - LTR33 LTR ERVL -2 519 218 280 203 127 0 chr1 245721562 245721641 -36472023 + MIR SINE MIR 113 201 -61 314 284 74 0 chr1 245721650 245721745 -36471919 - L2 LINE L2 -7 3306 3205 1686 225 117 19 chr1 245722019 245722491 -36471173 - MLT2B1 LTR ERVL 0 520 3 344 323 51 21 chr1 245723026 245723261 -36470403 + L2 LINE L2 2826 3067 -246 303 282 0 0 chr1 245724203 245724274 -36469390 + L2 LINE L2 3243 3313 0 633 222 39 101 chr1 245726303 245726609 -36467055 - HAL1 LINE L1 -1 2506 2220 27 0 0 0 chr1 245726725 245726752 -36466912 + AT_rich Low_complexity Low_complexity 1 27 0 280 284 81 20 chr1 245727018 245727166 -36466498 + HAL1b LINE L1 750 906 -442 1037 141 0 6 chr1 245727300 245727463 -36466201 + AluSq SINE Alu 152 313 0 235 284 0 0 chr1 245729446 245729513 -36464151 - L1MC5 LINE L1 -87 7874 7808 545 154 0 29 chr1 245729561 245729665 -36463999 - AluSg/x SINE Alu 0 312 212 1285 171 83 102 chr1 245729670 245729727 -36463937 - L1MC5 LINE L1 -180 7781 7724 1730 145 55 12 chr1 245729727 245730052 -36463612 - L1MB3 LINE L1 0 6183 5845 1285 171 83 102 chr1 245730052 245730256 -36463408 - L1MC5 LINE L1 -237 7724 7518 2842 10 3 10 chr1 245730256 245730568 -36463096 - AluY SINE Alu -1 310 1 1285 171 83 102 chr1 245730568 245730785 -36462879 - L1MC5 LINE L1 -443 7518 7311 4799 42 7 2 chr1 245730946 245731524 -36462140 + L1PA4 LINE L1 5574 6154 -1 1823 149 7 36 chr1 245731532 245731841 -36461823 + AluJo SINE Alu 5 304 -8 280 317 37 12 chr1 245732109 245732273 -36461391 - L3b LINE CR1 -139 1444 1277 201 158 0 0 chr1 245732472 245732510 -36461154 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 608 265 72 6 chr1 245733750 245733916 -36459748 + MER45A DNA AcHobo 1 177 -1 1531 159 7 18 chr1 245785916 245786193 -36407471 - AluJo SINE Alu -38 274 1 639 176 0 9 chr1 245787212 245787320 -36406344 - MIR SINE MIR -89 173 67 514 179 207 0 chr1 245787332 245787472 -36406192 - ORSL DNA AcHobo -21 254 86 1539 154 45 0 chr1 245789109 245789376 -36404288 - MER2 DNA MER2_type -25 320 42 837 255 148 39 chr1 245789739 245790248 -36403416 + MLT1L LTR MaLR 1 611 -3 182 296 0 0 chr1 245792522 245792566 -36401098 - L2 LINE L2 -967 2347 2304 884 180 146 0 chr1 245792598 245792804 -36400860 - MIR SINE MIR -17 245 10 249 108 0 0 chr1 245793879 245793916 -36399748 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 6267 78 4 60 chr1 245794343 245795419 -36398245 + SVA Other Other 432 1385 -1 22 35 0 0 chr1 245795474 245795503 -36398161 + AT_rich Low_complexity Low_complexity 1 29 0 232 270 135 54 chr1 245795511 245795918 -36397746 + L1M4 LINE L1 4513 4952 -1194 519 317 37 0 chr1 245797702 245797863 -36395801 + MIR SINE MIR 94 260 -2 229 314 25 59 chr1 245798949 245799067 -36394597 + L2 LINE L2 3139 3252 -20 2069 101 44 0 chr1 245799609 245799907 -36393757 + AluSx SINE Alu 1 311 -1 199 304 128 10 chr1 245800583 245800685 -36392979 - L2 LINE L2 0 3313 3200 1011 134 25 0 chr1 245800916 245801073 -36392591 + AluJo SINE Alu 1 161 -151 308 273 134 34 chr1 245801159 245801397 -36392267 - HAL1 LINE L1 -1 2506 2245 1218 265 122 40 chr1 245801685 245801960 -36391704 - HAL1 LINE L1 -335 2172 1921 2020 79 69 0 chr1 245801960 245802237 -36391427 - AluSp SINE Alu -17 296 1 1218 265 122 40 chr1 245802237 245802610 -36391054 - HAL1 LINE L1 -586 1921 1471 767 164 67 89 chr1 245802659 245802800 -36390864 - L1MB8 LINE L1 -1 6177 6041 1774 153 24 0 chr1 245802800 245803095 -36390569 + AluJo SINE Alu 1 302 -10 767 164 67 89 chr1 245803095 245803178 -36390486 - L1MB8 LINE L1 -137 6041 5958 1456 173 67 78 chr1 245803278 245803624 -36390040 + MLT1A1 LTR MaLR 24 365 0 320 254 33 57 chr1 245803710 245803832 -36389832 - MIR SINE MIR -122 140 22 232 247 74 62 chr1 245804476 245804557 -36389107 + MIR SINE MIR 111 192 -70 44030 44 3 5 chr1 245804781 245810941 -36382723 + L1PA4 LINE L1 7 6149 -6 650 263 17 29 chr1 245810970 245811145 -36382519 + MER5A DNA MER1_type 2 174 -15 482 239 70 24 chr1 245811147 245811348 -36382316 - MIR SINE MIR -41 221 5 217 245 293 0 chr1 245811682 245811788 -36381876 - MIR SINE MIR -17 245 109 200 310 0 0 chr1 245812258 245812316 -36381348 + C-rich Low_complexity Low_complexity 1 58 0 665 301 58 13 chr1 245812721 245812947 -36380717 + MIR SINE MIR 24 259 -3 894 196 57 0 chr1 245813853 245814034 -36379630 - MIR SINE MIR -58 204 11 497 230 44 9 chr1 245814382 245814495 -36379169 - MIR SINE MIR -35 227 111 501 258 179 0 chr1 245815924 245816075 -36377589 + MER5A DNA MER1_type 10 187 -2 511 272 84 14 chr1 245816555 245816727 -36376937 + L1MC4a LINE L1 5713 5904 -1904 1196 199 116 16 chr1 245816727 245817038 -36376626 + MER2 DNA MER2_type 3 344 0 511 272 84 14 chr1 245817038 245817078 -36376586 + L1MC4a LINE L1 5904 5940 -1868 1651 127 3 81 chr1 245817168 245817476 -36376188 - AluJb SINE Alu -18 294 11 939 227 61 18 chr1 245817817 245818095 -36375569 - L1ME2 LINE L1 -9 6155 5866 1320 262 84 31 chr1 245818098 245818552 -36375112 + MLT1J LTR MaLR 29 506 -5 2137 89 0 0 chr1 245818680 245818960 -36374704 + AluSx SINE Alu 1 280 -32 339 85 0 0 chr1 245818964 245819011 -36374653 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 469 188 180 0 chr1 245819012 245819140 -36374524 + L1M4 LINE L1 3697 3847 -2299 997 152 13 0 chr1 245819141 245819299 -36374365 + FAM SINE Alu 1 43 -6 2592 200 51 59 chr1 245819320 245819923 -36373741 + L1M4 LINE L1 3866 4461 -1685 1541 149 76 28 chr1 245819923 245820211 -36373453 + AluJo SINE Alu 1 302 -10 2592 200 51 59 chr1 245820211 245820472 -36373192 + L1M4 LINE L1 4461 4723 -1423 788 277 99 23 chr1 245821187 245821530 -36372134 - LTR33 LTR ERVL -51 470 102 211 323 108 31 chr1 245821653 245821783 -36371881 + MIR3 SINE MIR 18 157 -51 1916 96 50 4 chr1 245823054 245823375 -36370289 + AluSx SINE Alu 1 312 0 1312 211 63 32 chr1 245823724 245824136 -36369528 - LTR37A LTR ERV1 0 426 2 369 0 0 0 chr1 245824941 245824982 -36368682 + (T)n Simple_repeat Simple_repeat 1 41 0 312 232 101 30 chr1 245824982 245825081 -36368583 - L2 LINE L2 -20 3293 3188 213 253 19 25 chr1 245825306 245825464 -36368200 + (TTA)n Simple_repeat Simple_repeat 1 157 0 256 247 35 12 chr1 245826577 245826662 -36367002 + CT-rich Low_complexity Low_complexity 2 88 0 384 284 113 64 chr1 245827567 245827894 -36365770 - L2 LINE L2 -759 2555 2213 363 312 16 8 chr1 245827946 245828071 -36365593 - L2 LINE L2 -1342 1972 1847 722 272 65 9 chr1 245828073 245828305 -36365359 + MLT1J2 LTR MaLR 1 245 -205 418 311 44 0 chr1 245828879 245829014 -36364650 + MIR3 SINE MIR 47 187 -21 712 192 99 7 chr1 245830708 245830859 -36362805 - L1ME1 LINE L1 -5 6161 5997 362 169 155 0 chr1 245830887 245830958 -36362706 + L2 LINE L2 3225 3306 -7 186 343 45 0 chr1 245831037 245831104 -36362560 - L3 LINE CR1 -7 1570 1501 1612 193 3 7 chr1 245831192 245831638 -36362026 + AluJo SINE Alu 5 449 0 796 318 215 28 chr1 245831638 245832330 -36361334 - L3 LINE CR1 -193 1384 563 186 281 219 0 chr1 245832492 245832620 -36361044 + L2 LINE L2 2899 3054 -218 554 168 0 32 chr1 245833261 245833446 -36360218 + (CA)n Simple_repeat Simple_repeat 2 180 0 303 220 18 0 chr1 245833484 245833652 -36360012 + (CA)n Simple_repeat Simple_repeat 1 171 0 875 203 28 18 chr1 245834436 245834653 -36359011 + MER20 DNA MER1_type 1 219 0 371 215 0 0 chr1 245834845 245834910 -36358754 - MIR SINE MIR -62 146 82 686 144 29 0 chr1 245835824 245835928 -36357736 + U6 snRNA snRNA 1 107 0 2081 89 0 0 chr1 245836029 245836298 -36357366 - AluSq SINE Alu -44 269 1 2135 199 34 43 chr1 245837411 245837919 -36355745 + MLT1D LTR MaLR 1 503 -2 1212 223 95 15 chr1 245838641 245838774 -36354890 + AluJb SINE Alu 1 122 -180 2150 83 17 7 chr1 245838774 245839075 -36354589 + AluSg SINE Alu 1 304 -6 1212 223 95 15 chr1 245839075 245839215 -36354449 + AluJb SINE Alu 122 296 -6 525 332 86 36 chr1 245839366 245839981 -36353683 - L2 LINE L2 -799 2515 1870 234 0 0 0 chr1 245839982 245840008 -36353656 + (TG)n Simple_repeat Simple_repeat 2 27 0 183 186 0 0 chr1 245840028 245840071 -36353593 + (TG)n Simple_repeat Simple_repeat 2 44 0 204 233 142 42 chr1 245840232 245840352 -36353312 - L2 LINE L2 -1550 1764 1633 402 278 8 15 chr1 245840829 245840962 -36352702 - MIR SINE MIR -119 143 12 208 359 61 23 chr1 245841781 245841912 -36351752 + MIR SINE MIR 1 136 -126 494 222 24 32 chr1 245841926 245842052 -36351612 - L2 LINE L2 0 3313 3189 513 274 15 24 chr1 245842351 245842526 -36351138 - MIR SINE MIR -57 205 33 32 0 0 0 chr1 245843337 245843369 -36350295 + GC_rich Low_complexity Low_complexity 1 32 0 1219 135 0 45 chr1 245844548 245844770 -36348894 + AluJo SINE Alu 87 298 -14 734 289 80 45 chr1 245845089 245845455 -36348209 + L1ME4a LINE L1 5461 5854 -267 967 177 0 13 chr1 245845455 245845613 -36348051 + FRAM SINE Alu 1 156 -10 734 289 80 45 chr1 245845613 245845796 -36347868 + L1ME4a LINE L1 5854 6029 -92 1096 257 128 10 chr1 245846464 245847099 -36346565 - L2 LINE L2 -32 3281 2566 1427 255 98 10 chr1 245847106 245847727 -36345937 + MER69 DNA AcHobo 3 698 -528 3086 202 42 29 chr1 245847811 245848342 -36345322 + MER69 DNA AcHobo 1536 2084 -442 2165 95 7 0 chr1 245848342 245848662 -36345002 - AluSp SINE Alu 0 313 1 3086 202 42 29 chr1 245848662 245848987 -36344677 + MER69 DNA AcHobo 2084 2403 -123 2004 110 0 39 chr1 245849026 245849335 -36344329 - AluSx SINE Alu -15 297 1 1800 156 0 0 chr1 245849480 245849769 -36343895 - AluJb SINE Alu 0 312 24 435 271 103 58 chr1 245849872 245850033 -36343631 - L1ME LINE L1 -297 5824 5672 2002 100 0 0 chr1 245850033 245850304 -36343360 - AluSg SINE Alu -13 297 27 1843 135 28 3 chr1 245850304 245850590 -36343074 - AluSx SINE Alu -15 297 3 435 271 103 58 chr1 245850590 245850718 -36342946 - L1ME LINE L1 -448 5673 5521 190 153 34 34 chr1 245851360 245851419 -36342245 + CT-rich Low_complexity Low_complexity 3 61 0 188 343 109 0 chr1 245851424 245851561 -36342103 + L2 LINE L2 2258 2409 -905 2258 223 154 58 chr1 245851659 245852772 -36340892 - MER69B DNA AcHobo -2 1224 4 212 132 53 0 chr1 245852803 245852841 -36340823 + CT-rich Low_complexity Low_complexity 2 41 0 196 340 19 78 chr1 245853003 245853259 -36340405 + L2 LINE L2 2830 3070 -202 24 67 0 0 chr1 245853293 245853338 -36340326 + AT_rich Low_complexity Low_complexity 1 45 0 2068 117 0 3 chr1 245853445 245853744 -36339920 - AluSx SINE Alu -14 298 1 320 236 56 0 chr1 245853935 245854024 -36339640 - MIR SINE MIR -125 137 44 1986 111 0 0 chr1 245854228 245854507 -36339157 - AluSx SINE Alu -25 287 9 1281 145 161 0 chr1 245855039 245855288 -36338376 + AluJo SINE Alu 10 298 -14 6898 198 123 31 chr1 245855612 245856152 -36337512 - L1MD1 LINE L1 -5 6237 5748 1599 178 0 10 chr1 245856152 245856444 -36337220 + AluJo SINE Alu 3 291 -21 6898 198 123 31 chr1 245856444 245856860 -36336804 - L1MD1 LINE L1 -494 5748 5372 1455 194 46 0 chr1 245856860 245857020 -36336644 - AluJb SINE Alu -15 297 117 216 0 0 0 chr1 245857020 245857044 -36336620 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1455 194 46 0 chr1 245857044 245857167 -36336497 - AluJb SINE Alu -195 117 1 6898 198 123 31 chr1 245857167 245857491 -36336173 - L1MD1 LINE L1 -870 5372 5079 1963 133 3 7 chr1 245857491 245857793 -36335871 - AluSx SINE Alu -11 301 1 6898 198 123 31 chr1 245857793 245858950 -36334714 - L1MD1 LINE L1 -1163 5079 4031 2227 84 3 32 chr1 245858950 245859261 -36334403 - AluSp SINE Alu -10 303 2 6898 198 123 31 chr1 245859261 245860160 -36333504 - L1MD1 LINE L1 -2211 4031 2561 381 222 96 38 chr1 245860157 245860313 -36333351 - L1ME LINE L1 -668 5483 5325 * 539 52 26 13 chr1 245860329 245860406 -36333258 - MADE1 DNA Mariner -2 78 1 203 182 0 55 chr1 245860422 245860477 -36333187 + T-rich Low_complexity Low_complexity 2 53 0 2174 92 0 10 chr1 245861043 245861336 -36332328 - AluSx SINE Alu -22 290 1 4813 141 5 9 chr1 245861600 245862364 -36331300 - L1PA16 LINE L1 -17 6149 5389 2231 72 7 3 chr1 245862394 245862686 -36330978 + AluSp SINE Alu 1 293 -20 236 30 30 0 chr1 245862859 245862892 -36330772 + (TTA)n Simple_repeat Simple_repeat 2 35 0 30 0 0 0 chr1 245863173 245863203 -36330461 + AT_rich Low_complexity Low_complexity 1 30 0 494 336 80 18 chr1 245863384 245863658 -36330006 - L3b LINE CR1 -170 1413 1123 189 279 44 59 chr1 245863713 245863781 -36329883 + MIR3 SINE MIR 130 196 -12 245 266 133 23 chr1 245864538 245864666 -36328998 + L2 LINE L2 2914 3055 -217 368 194 30 0 chr1 245865005 245865072 -36328592 - L2 LINE L2 -4 3309 3241 1149 150 35 115 chr1 245865194 245865481 -36328183 - AluJb SINE Alu -48 264 1 791 249 95 69 chr1 245865498 245865973 -36327691 + MLT1H LTR MaLR 1 517 -32 770 173 0 15 chr1 245866111 245866275 -36327389 + FLAM_C SINE Alu 1 133 0 2161 42 3 35 chr1 245866331 245866644 -36327020 + SVA Other Other 1 303 -1083 532 265 73 24 chr1 245866745 245867032 -36326632 - HAL1 LINE L1 -1316 1191 891 255 283 202 0 chr1 245867032 245867131 -36326533 - L2 LINE L2 -2 3311 3193 1064 217 143 31 chr1 245867191 245867513 -36326151 - L1ME3 LINE L1 -1 6161 5804 283 322 132 26 chr1 245867540 245867692 -36325972 + L2 LINE L2 3007 3174 -98 1096 235 21 0 chr1 245867731 245867969 -36325695 - MIR SINE MIR 0 262 20 475 255 20 0 chr1 245867989 245868087 -36325577 - MIR SINE MIR -145 117 18 1665 183 7 94 chr1 245868348 245868753 -36324911 + MLT1A2 LTR MaLR 1 370 -4 1453 185 47 10 chr1 245868825 245869123 -36324541 - AluJb SINE Alu -3 309 1 372 255 137 97 chr1 245869477 245869750 -36323914 - L1MC5 LINE L1 -5 8037 7645 2152 117 10 0 chr1 245871565 245871856 -36321808 - AluSx SINE Alu -14 298 5 647 218 96 0 chr1 245871899 245872055 -36321609 + MIR SINE MIR 92 262 0 203 296 0 0 chr1 245872129 245872173 -36321491 + MIR SINE MIR 216 259 -3 342 205 90 0 chr1 245873273 245873351 -36320313 - Charlie4a DNA MER1_type -1 507 423 812 209 138 5 chr1 245873359 245873569 -36320095 - L1ME2 LINE L1 -1 6163 5926 21 0 0 0 chr1 245873574 245873595 -36320069 + AT_rich Low_complexity Low_complexity 1 21 0 908 225 70 11 chr1 245873603 245873888 -36319776 - Charlie4a DNA MER1_type -163 345 44 260 312 64 24 chr1 245874106 245874153 -36319511 - L2 LINE L2 -4 3268 3224 2584 97 80 12 chr1 245874153 245874554 -36319110 + MSTA LTR MaLR 1 428 0 260 312 64 24 chr1 245874554 245874631 -36319033 - L2 LINE L2 -48 3224 3139 386 164 230 66 chr1 245874816 245875042 -36318622 - MER20B DNA MER1_type -6 777 515 23 0 0 0 chr1 245875622 245875645 -36318019 + AT_rich Low_complexity Low_complexity 1 23 0 2268 97 7 7 chr1 245875962 245876260 -36317404 - AluSc SINE Alu -11 298 1 3288 182 106 58 chr1 245876424 245877654 -36316010 + L1M4 LINE L1 2 1171 -5473 2100 107 11 0 chr1 245877654 245877962 -36315702 + AluSx SINE Alu 1 311 0 414 100 0 0 chr1 245877962 245878022 -36315642 + (TA)n Simple_repeat Simple_repeat 1 60 0 3288 182 106 58 chr1 245878022 245878484 -36315180 + L1M4 LINE L1 1171 1609 -5035 1779 172 0 11 chr1 245878484 245878792 -36314872 + AluJb SINE Alu 3 307 0 3288 182 106 58 chr1 245878792 245879503 -36314161 + L1M4 LINE L1 1609 2804 -3840 452 125 67 48 chr1 245879520 245879624 -36314040 + L1MB4 LINE L1 6075 6180 0 1898 117 60 0 chr1 245879665 245879947 -36313717 + AluSx SINE Alu 1 299 -13 1647 213 42 81 chr1 245879947 245880491 -36313173 + MLT1F LTR MaLR 20 542 0 2035 141 3 7 chr1 245880563 245880869 -36312795 - AluSx SINE Alu -7 305 1 1787 219 77 9 chr1 245881027 245881557 -36312107 + L1ME3 LINE L1 5484 6049 -113 262 212 0 71 chr1 245881864 245881949 -36311715 + L1ME3 LINE L1 6036 6114 -48 843 93 0 0 chr1 245882143 245882250 -36311414 - AluJo/FRAM SINE Alu -8 304 198 918 161 0 0 chr1 245882251 245882388 -36311276 - FRAM SINE Alu -39 137 1 445 257 24 10 chr1 245882604 245882853 -36310811 - MER20B DNA MER1_type -486 297 5 196 363 44 33 chr1 245882876 245882967 -36310697 + L2 LINE L2 3159 3250 -22 943 194 69 123 chr1 245883132 245883460 -36310204 + HAL1 LINE L1 1698 1992 -515 2054 119 7 3 chr1 245883460 245883754 -36309910 + AluSx SINE Alu 1 295 -17 943 194 69 123 chr1 245883754 245883919 -36309745 + HAL1 LINE L1 1992 2164 -343 211 298 23 69 chr1 245884084 245884215 -36309449 - MIR SINE MIR -59 203 79 23 33 0 0 chr1 245885045 245885075 -36308589 + AT_rich Low_complexity Low_complexity 1 30 0 439 318 252 24 chr1 245886061 245886473 -36307191 + L2 LINE L2 2808 3313 0 456 274 131 17 chr1 245886494 245886731 -36306933 - L2 LINE L2 -36 3277 3014 190 204 61 20 chr1 245886900 245886949 -36306715 - L2 LINE L2 -571 2743 2693 2195 100 28 0 chr1 245887298 245887589 -36306075 + AluSq SINE Alu 1 299 -14 27 29 0 0 chr1 245888234 245888268 -36305396 + AT_rich Low_complexity Low_complexity 1 34 0 219 189 0 19 chr1 245888530 245888583 -36305081 + (TA)n Simple_repeat Simple_repeat 1 52 0 1912 140 36 0 chr1 245888934 245889213 -36304451 - AluJo SINE Alu -23 289 1 1188 280 82 43 chr1 245889291 245889341 -36304323 - L2 LINE L2 -13 3300 3253 2228 124 0 0 chr1 245889341 245889648 -36304016 + AluSx SINE Alu 1 307 -5 1188 280 82 43 chr1 245889648 245890212 -36303452 - L2 LINE L2 -60 3253 2630 2168 182 26 10 chr1 245890212 245890630 -36303034 - MSTB LTR MaLR -1 425 1 1188 280 82 43 chr1 245890630 245890776 -36302888 - L2 LINE L2 -683 2630 2491 919 198 20 12 chr1 245891137 245891385 -36302279 + L1M4 LINE L1 4167 4416 -1730 6695 52 5 41 chr1 245891518 245892441 -36301223 + SVA Other Other 497 1386 0 325 274 0 60 chr1 245892831 245892948 -36300716 - MIR3 SINE MIR -22 186 77 197 306 14 14 chr1 245894060 245894132 -36299532 - MER5B DNA MER1_type -41 137 66 545 212 0 0 chr1 245894943 245895042 -36298622 + AluJ/FLAM SINE Alu 1 99 -213 180 0 0 0 chr1 245895066 245895086 -36298578 + (CAGGG)n Simple_repeat Simple_repeat 5 24 0 491 338 61 64 chr1 245896571 245896917 -36296747 - L2 LINE L2 0 3272 2928 297 250 164 19 chr1 245897210 245897264 -36296400 - MER5A DNA MER1_type 0 189 144 2010 55 8 0 chr1 245897264 245897518 -36296146 - L1PA5 LINE L1 -3 6151 5896 297 250 164 19 chr1 245897518 245897567 -36296097 - MER5A DNA MER1_type -45 144 71 321 211 18 26 chr1 245897926 245898040 -36295624 + CT-rich Low_complexity Low_complexity 5 117 0 774 67 9 0 chr1 245898078 245898183 -36295481 - L1PB3 LINE L1 -8 6146 6041 2039 129 11 0 chr1 245898457 245898743 -36294921 + AluSq SINE Alu 14 302 -11 205 200 44 0 chr1 245898760 245898805 -36294859 - L2 LINE L2 0 3313 3267 1645 158 72 7 chr1 245898817 245899095 -36294569 + AluSg SINE Alu 1 296 -14 275 234 161 23 chr1 245899957 245900050 -36293614 + L1MC5 LINE L1 7688 7767 -194 1604 167 19 7 chr1 245900050 245900320 -36293344 + AluJo SINE Alu 1 273 -39 275 234 161 23 chr1 245900320 245900444 -36293220 + L1MC5 LINE L1 7767 7935 -26 271 272 115 23 chr1 245900531 245900748 -36292916 + L1ME LINE L1 5603 5802 -368 2466 89 0 0 chr1 245901117 245901430 -36292234 - AluSq SINE Alu 0 313 1 2389 46 0 46 chr1 245901940 245902245 -36291419 - AluY SINE Alu -20 291 1 1382 176 4 0 chr1 245902277 245902510 -36291154 + AluSq SINE Alu 66 299 -14 28 0 0 0 chr1 245902510 245902538 -36291126 + AT_rich Low_complexity Low_complexity 1 28 0 973 181 0 6 chr1 245902538 245902698 -36290966 + FRAM SINE Alu 1 159 -17 22 0 0 0 chr1 245902698 245902720 -36290944 + AT_rich Low_complexity Low_complexity 1 22 0 314 257 29 36 chr1 245902752 245902892 -36290772 + L1M4 LINE L1 3061 3199 -2947 550 221 114 28 chr1 245902909 245903198 -36290466 + L1M4 LINE L1 2913 3226 -2920 180 0 0 0 chr1 245903199 245903219 -36290445 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 1602 164 39 31 chr1 245903227 245903513 -36290151 + AluJb SINE Alu 6 293 -19 655 309 74 24 chr1 245904019 245904356 -36289308 - L2 LINE L2 -612 2702 2349 187 316 79 0 chr1 245904357 245904433 -36289231 + L2 LINE L2 3169 3250 -63 5758 78 24 12 chr1 245904520 245905357 -36288307 + SVA Other Other 20 866 -520 21 0 0 0 chr1 245905396 245905417 -36288247 + AT_rich Low_complexity Low_complexity 1 21 0 2164 166 31 3 chr1 245905509 245906012 -36287652 - L1M4 LINE L1 -450 5728 5211 9680 169 31 35 chr1 245906028 245907717 -36285947 - L1MA3 LINE L1 0 7367 5673 1970 155 20 3 chr1 245907717 245907895 -36285769 - AluSx SINE Alu -3 309 122 207 0 0 0 chr1 245907895 245907918 -36285746 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1970 155 20 3 chr1 245907918 245908043 -36285621 - AluSx SINE Alu -190 122 1 9680 169 31 35 chr1 245908043 245908192 -36285472 - L1MA3 LINE L1 -1694 5673 5525 2057 124 44 44 chr1 245908192 245908556 -36285108 - THE1B LTR MaLR 0 364 1 9680 169 31 35 chr1 245908556 245909086 -36284578 - L1MA3 LINE L1 -1842 5525 4994 2381 99 0 0 chr1 245909086 245909389 -36284275 - AluSp SINE Alu -10 303 1 9680 169 31 35 chr1 245909389 245909919 -36283745 - L1MA3 LINE L1 -2373 4994 4476 222 62 0 0 chr1 245909919 245909951 -36283713 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 9680 169 31 35 chr1 245909951 245910155 -36283509 - L1MA3 LINE L1 -2891 4476 4273 4271 162 28 9 chr1 245910155 245911337 -36282327 - L1MA3 LINE L1 -3581 3627 2423 881 102 0 24 chr1 245911367 245911494 -36282170 - FRAM SINE Alu -22 154 31 251 56 0 0 chr1 245911494 245911530 -36282134 - L1MA3 LINE L1 -4840 2369 2334 21 0 0 31 chr1 245911531 245911544 -36282120 + AT_rich Low_complexity Low_complexity 1 13 -18 3390 113 39 6 chr1 245911544 245912082 -36281582 - L1PB2 LINE L1 -3 6864 6309 21 0 0 31 chr1 245912082 245912100 -36281564 + AT_rich Low_complexity Low_complexity 13 31 0 1890 107 0 0 chr1 245912207 245912459 -36281205 - AluSx SINE Alu -60 252 1 13640 178 29 20 chr1 245912459 245913822 -36279842 - L1PB2 LINE L1 -543 6324 4975 1819 74 0 13 chr1 245913822 245914053 -36279611 - AluY SINE Alu -1 310 83 13640 178 29 20 chr1 245914053 245914340 -36279324 - L1PB2 LINE L1 -1892 4975 4692 2465 76 0 0 chr1 245914340 245914642 -36279022 - AluY SINE Alu -9 302 1 13640 178 29 20 chr1 245914642 245914671 -36278993 - L1PB2 LINE L1 -2175 4692 4665 1948 136 56 0 chr1 245914671 245914957 -36278707 - AluSx SINE Alu -9 303 2 13640 178 29 20 chr1 245914957 245915625 -36278039 - L1PB2 LINE L1 -2202 4665 4005 2181 126 7 0 chr1 245915625 245915926 -36277738 - AluSx SINE Alu -2 310 8 13640 178 29 20 chr1 245915926 245917231 -36276433 - L1PB2 LINE L1 -2862 4005 2626 2120 273 88 16 chr1 245917237 245918055 -36275609 - L1PB2 LINE L1 -5984 879 3 1194 124 67 53 chr1 245918083 245918167 -36275497 - MER30 DNA MER1_type 0 230 149 2285 121 0 6 chr1 245918167 245918481 -36275183 - AluSx SINE Alu 0 312 1 1194 124 67 53 chr1 245918481 245918621 -36275043 - MER30 DNA MER1_type -81 149 3 1031 147 31 0 chr1 245918621 245918845 -36274819 - L1MA3 LINE L1 -4866 2343 2113 1309 180 73 0 chr1 245918846 245919091 -36274573 - AluJo SINE Alu 0 312 50 782 177 0 0 chr1 245919097 245919227 -36274437 - AluJb SINE Alu -179 133 4 4484 267 115 45 chr1 245919231 245921200 -36272464 - L1MA3 LINE L1 -5095 2114 1 2478 33 0 46 chr1 245921573 245921878 -36271786 - AluY SINE Alu -20 291 1 2557 51 0 3 chr1 245922191 245922503 -36271161 + AluY SINE Alu 1 311 0 1232 164 150 18 chr1 245922599 245922885 -36270779 + MER33 DNA MER1_type 1 324 0 1850 123 20 17 chr1 245923902 245924204 -36269460 + AluJb SINE Alu 1 303 -9 845 163 0 0 chr1 245924249 245924372 -36269292 + FLAM_C SINE Alu 2 124 -19 1607 288 109 56 chr1 245924528 245924747 -36268917 - L2 LINE L2 -338 2976 2770 1720 167 0 17 chr1 245924747 245925041 -36268623 - AluSx SINE Alu 0 312 24 1607 288 109 56 chr1 245925041 245925549 -36268115 - L2 LINE L2 -544 2770 2290 2401 84 0 3 chr1 245925549 245925848 -36267816 + AluY SINE Alu 1 298 -13 1607 288 109 56 chr1 245925848 245925859 -36267805 - L2 LINE L2 -1024 2290 2281 2128 127 3 0 chr1 245925859 245926158 -36267506 + AluSq SINE Alu 1 300 -13 1607 288 109 56 chr1 245926158 245926436 -36267228 - L2 LINE L2 -1033 2281 1904 2156 123 0 0 chr1 245926796 245927121 -36266543 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1 245927121 245927145 -36266519 + AT_rich Low_complexity Low_complexity 1 24 0 729 205 0 0 chr1 245927145 245927262 -36266402 - FLAM_C SINE Alu -25 118 2 639 255 73 61 chr1 245927263 245927510 -36266154 - MIR SINE MIR -5 257 8 394 289 83 17 chr1 245927756 245927936 -36265728 + MIR SINE MIR 56 247 -15 23 92 0 0 chr1 245927999 245928064 -36265600 + AT_rich Low_complexity Low_complexity 1 65 0 1994 149 7 0 chr1 245928290 245928586 -36265078 - AluSx SINE Alu -14 298 1 616 274 129 40 chr1 245928799 245929201 -36264463 + L1ME4a LINE L1 5617 6054 -67 2054 141 0 0 chr1 245929595 245929886 -36263778 + AluY SINE Alu 1 291 -20 899 127 28 21 chr1 245929965 245930107 -36263557 + FLAM_C SINE Alu 1 143 0 891 301 111 57 chr1 245930290 245931047 -36262617 - L2 LINE L2 -10 3303 2503 2396 86 0 7 chr1 245931087 245931390 -36262274 - AluSx SINE Alu -11 301 1 2202 110 10 7 chr1 245931400 245931699 -36261965 - AluSp SINE Alu -13 300 1 271 276 118 96 chr1 245932207 245932562 -36261102 - L2 LINE L2 -449 2865 2503 2277 106 0 3 chr1 245932602 245932904 -36260760 - AluSx SINE Alu -11 301 1 238 136 258 30 chr1 245933220 245933286 -36260378 - L2 LINE L2 0 3313 3233 245 296 19 46 chr1 245933289 245933397 -36260267 - L2 LINE L2 -707 2607 2503 546 122 0 24 chr1 245933437 245933519 -36260145 - AluJ/FRAM SINE Alu -10 302 223 323 283 11 0 chr1 245933529 245933621 -36260043 + MER102a DNA MER1_type 214 306 -24 294 284 12 0 chr1 245933699 245933780 -36259884 + CT-rich Low_complexity Low_complexity 2 83 0 266 217 134 83 chr1 245933783 245933940 -36259724 + MIR SINE MIR 8 172 -90 1723 156 52 7 chr1 245933992 245934281 -36259383 + AluJo SINE Alu 5 306 -6 221 238 0 79 chr1 245935648 245935711 -36257953 + MIR SINE MIR 184 241 -21 25 0 0 0 chr1 245936194 245936219 -36257445 + AT_rich Low_complexity Low_complexity 1 25 0 2035 98 3 83 chr1 245936224 245936549 -36257115 - AluSx SINE Alu -13 299 1 1320 128 64 91 chr1 245936684 245936819 -36256845 + MER33 DNA MER1_type 1 138 -2447 2231 112 3 0 chr1 245936819 245937122 -36256542 + AluSq SINE Alu 1 304 -9 1320 128 64 91 chr1 245937122 245937315 -36256349 + MER33 DNA MER1_type 138 320 -4 2197 125 3 0 chr1 245938018 245938322 -36255342 - AluSx SINE Alu -3 309 5 2300 99 0 0 chr1 245938328 245938621 -36255043 - AluSx SINE Alu -19 293 1 1907 141 0 32 chr1 245939434 245939746 -36253918 - AluJb SINE Alu -10 302 1 189 0 0 0 chr1 245939792 245939813 -36253851 + (TC)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr1 245939814 245939836 -36253828 + (TA)n Simple_repeat Simple_repeat 2 23 0 2070 114 3 10 chr1 245939948 245940247 -36253417 - AluSx SINE Alu -15 297 1 859 270 45 10 chr1 245940641 245941043 -36252621 + LTR67 LTR ERVL 101 555 -2 1775 127 28 0 chr1 245941325 245941609 -36252055 + AluSx SINE Alu 1 292 -20 330 0 39 20 chr1 245942664 245942715 -36250949 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 1973 123 3 29 chr1 245942776 245943084 -36250580 - AluJb SINE Alu 0 312 13 891 143 0 0 chr1 245943127 245943253 -36250411 - FLAM_C SINE Alu -7 126 1 1372 183 4 12 chr1 245943563 245943815 -36249849 + MLT2D LTR ERVL 1 250 -164 2774 122 27 72 chr1 245944061 245944615 -36249049 - LTR10A LTR ERV1 -21 612 41 2281 127 0 0 chr1 245944616 245944923 -36248741 + AluSx SINE Alu 1 307 -5 2075 89 0 72 chr1 245944925 245945260 -36248404 + AluY SINE Alu 1 313 0 227 263 0 35 chr1 245945260 245945317 -36248347 - LTR10A LTR ERV1 -554 55 1 187 315 71 39 chr1 245945329 245945456 -36248208 - L2 LINE L2 -218 3054 2924 1572 183 59 0 chr1 245945524 245945813 -36247851 + AluJb SINE Alu 1 306 -6 1477 225 158 31 chr1 245945933 245946356 -36247308 + LTR40a LTR ERVL 1 477 -42 1736 147 54 0 chr1 245946398 245946677 -36246987 + AluJb SINE Alu 1 294 -18 821 189 7 7 chr1 245946684 245946832 -36246832 - FAM SINE Alu -37 148 1 1994 119 11 0 chr1 245947200 245947477 -36246187 + AluSx SINE Alu 14 293 -19 2253 123 0 0 chr1 245947823 245948123 -36245541 + AluSx SINE Alu 3 302 -10 22 35 0 0 chr1 245948294 245948323 -36245341 + AT_rich Low_complexity Low_complexity 1 29 0 2260 80 0 10 chr1 245948528 245948828 -36244836 + AluSc SINE Alu 1 297 -12 2102 104 0 7 chr1 245948839 245949128 -36244536 + AluSc SINE Alu 1 287 -22 1196 101 0 48 chr1 245949128 245949316 -36244348 + AluSg/x SINE Alu 134 312 0 1937 155 0 13 chr1 245949325 245949629 -36244035 + AluJo SINE Alu 1 300 -12 446 237 13 58 chr1 245949880 245950036 -36243628 + L2 LINE L2 48 196 -3118 2253 73 52 0 chr1 245950154 245950442 -36243222 - AluSq SINE Alu -10 303 1 966 105 0 35 chr1 245950499 245950642 -36243022 - FLAM_C SINE Alu 0 143 6 344 266 110 9 chr1 245950642 245950751 -36242913 + L2 LINE L2 3193 3312 -1 551 261 0 35 chr1 245951015 245951157 -36242507 - L2 LINE L2 0 3272 3136 1877 101 72 14 chr1 245951238 245951514 -36242150 - L1PB2 LINE L1 -1 6150 5859 528 139 0 0 chr1 245951516 245951588 -36242076 + AluS SINE Alu 2 73 -240 1399 118 0 0 chr1 245951689 245951876 -36241788 - AluJb SINE Alu -125 187 1 22 0 0 0 chr1 245951876 245951898 -36241766 + AT_rich Low_complexity Low_complexity 1 22 0 3318 165 21 43 chr1 245952269 245952354 -36241310 + L1MB7 LINE L1 4944 5029 -1155 2200 111 3 3 chr1 245952354 245952660 -36241004 + AluSq SINE Alu 1 306 -7 3318 165 21 43 chr1 245952660 245953710 -36239954 + L1MB7 LINE L1 5029 6161 -23 2523 58 0 3 chr1 245953727 245954035 -36239629 + AluY SINE Alu 1 307 -4 2157 112 14 0 chr1 245954066 245954353 -36239311 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr1 245954356 245954386 -36239278 + AT_rich Low_complexity Low_complexity 1 30 0 853 194 0 0 chr1 245954406 245954550 -36239114 + AluJb SINE Alu 1 144 -168 2540 43 0 10 chr1 245954552 245954854 -36238810 + AluY SINE Alu 1 299 -12 755 156 0 0 chr1 245955060 245955182 -36238482 - FLAM_C SINE Alu -1 142 21 2160 186 7 32 chr1 245955256 245955697 -36237967 - L1MB8 LINE L1 -6 6172 5743 2382 172 36 5 chr1 245955761 245956293 -36237371 - L1MB8 LINE L1 -443 5735 5188 * 10644 169 33 36 chr1 245956289 245957978 -36235686 - L1MA3 LINE L1 0 7007 5313 1947 155 20 3 chr1 245957978 245958156 -36235508 - AluSx SINE Alu -3 309 122 207 0 0 0 chr1 245958156 245958179 -36235485 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1947 155 20 3 chr1 245958179 245958304 -36235360 - AluSx SINE Alu -190 122 1 10644 169 33 36 chr1 245958304 245958453 -36235211 - L1MA3 LINE L1 -1694 5313 5165 2227 124 44 44 chr1 245958453 245958817 -36234847 - THE1B LTR MaLR 0 364 1 10644 169 33 36 chr1 245958817 245959347 -36234317 - L1MA3 LINE L1 -1842 5165 4635 2381 99 0 0 chr1 245959347 245959650 -36234014 - AluSp SINE Alu -10 303 1 10644 169 33 36 chr1 245959650 245960179 -36233485 - L1MA3 LINE L1 -2372 4635 4116 222 62 0 0 chr1 245960179 245960211 -36233453 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 10644 169 33 36 chr1 245960211 245960415 -36233249 - L1MA3 LINE L1 -2891 4116 3913 1976 161 36 16 chr1 245960403 245961101 -36232563 - L1MA3 LINE L1 -3571 3277 2565 * 696 104 0 0 chr1 245961201 245961297 -36232367 + AluSp/q SINE Alu 211 306 -7 3318 171 53 50 chr1 245961298 245962357 -36231307 + L1MB7 LINE L1 5036 6161 -23 2523 58 0 3 chr1 245962364 245962672 -36230992 + AluY SINE Alu 1 307 -4 2157 112 14 0 chr1 245962703 245962990 -36230674 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr1 245962993 245963023 -36230641 + AT_rich Low_complexity Low_complexity 1 30 0 1550 187 0 45 chr1 245963043 245963189 -36230475 + AluJb SINE Alu 1 127 -185 2631 42 0 10 chr1 245963189 245963499 -36230165 + AluY SINE Alu 1 307 -4 1550 187 0 45 chr1 245963499 245963662 -36230002 + AluJb SINE Alu 127 296 -16 2002 140 0 14 chr1 245963955 245964111 -36229553 - AluSx SINE Alu -23 289 137 1952 93 75 0 chr1 245964111 245964389 -36229275 - AluSq SINE Alu -14 299 1 2002 140 0 14 chr1 245964389 245964525 -36229139 - AluSx SINE Alu -175 137 1 620 75 12 0 chr1 245964549 245964629 -36229035 - AluSg/x SINE Alu -21 288 208 2207 124 0 0 chr1 245964655 245964961 -36228703 - AluSg SINE Alu -3 307 2 1202 38 0 0 chr1 245964961 245965094 -36228570 - AluSg SINE Alu -177 133 1 598 289 48 48 chr1 245965526 245965682 -36227982 + MIR SINE MIR 14 172 -90 2426 70 0 13 chr1 245965682 245965984 -36227680 + AluSp SINE Alu 1 298 -15 598 289 48 48 chr1 245965984 245966076 -36227588 + MIR SINE MIR 171 262 0 680 165 70 0 chr1 245966515 245966630 -36227034 - AluJb SINE Alu 0 312 190 1466 93 0 0 chr1 245966662 245966855 -36226809 - AluSg/x SINE Alu -2 308 116 940 126 0 28 chr1 245966938 245967081 -36226583 - FLAM_C SINE Alu -4 139 1 303 208 156 0 chr1 245967116 245967193 -36226471 - L1ME LINE L1 -297 5824 5736 704 159 26 101 chr1 245967348 245967537 -36226127 - MER104 DNA MER2_type -3 177 3 2352 69 10 0 chr1 245968490 245968779 -36224885 - AluSp SINE Alu -16 297 6 593 213 22 44 chr1 245969159 245969295 -36224369 + FLAM_A SINE Alu 1 133 0 471 167 14 65 chr1 245969320 245969458 -36224206 + L1MB5 LINE L1 6044 6174 0 265 323 0 32 chr1 245969711 245969804 -36223860 + L3 LINE CR1 1477 1566 -11 290 311 126 20 chr1 245969978 245970129 -36223535 - L2 LINE L2 -21 3292 3126 1775 159 0 4 chr1 245970182 245970459 -36223205 + AluSx SINE Alu 1 276 -36 1873 130 17 27 chr1 245970598 245970890 -36222774 + AluSx SINE Alu 17 305 -7 559 278 28 0 chr1 245971105 245971249 -36222415 + MER41D LTR ERV1 383 530 -27 1997 115 0 16 chr1 245971456 245971760 -36221904 - AluSg SINE Alu -11 299 1 2124 113 3 3 chr1 245971874 245972166 -36221498 - AluSx SINE Alu -20 292 1 285 151 0 0 chr1 245972429 245972482 -36221182 + T-rich Low_complexity Low_complexity 1 53 0 345 181 0 36 chr1 245972482 245972565 -36221099 - MER61E LTR ERV1 -117 452 373 1961 138 0 0 chr1 245973337 245973627 -36220037 + AluSx SINE Alu 1 290 -22 181 365 71 0 chr1 245973716 245973801 -36219863 - MIR SINE MIR -84 124 34 216 0 0 0 chr1 245974017 245974041 -36219623 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 306 264 39 93 chr1 245974041 245974170 -36219494 + LTR67 LTR ERVL 23 144 -413 487 229 42 60 chr1 245974266 245974432 -36219232 + LTR67 LTR ERVL 356 518 -39 1827 164 7 0 chr1 245974432 245974731 -36218933 + AluJo SINE Alu 1 301 -11 1916 156 0 0 chr1 245975353 245975654 -36218010 - AluSx SINE Alu -9 303 3 2216 89 0 32 chr1 245975668 245975982 -36217682 - AluSg SINE Alu -6 304 1 22 88 0 0 chr1 245976145 245976202 -36217462 + AT_rich Low_complexity Low_complexity 1 57 0 400 171 122 8 chr1 245976215 245976338 -36217326 - L1ME4a LINE L1 -9 6112 5976 2135 103 0 3 chr1 245976377 245976678 -36216986 + AluSg SINE Alu 1 300 -10 782 227 0 0 chr1 245976679 245976820 -36216844 + AluSg/x SINE Alu 133 273 -37 1313 200 51 115 chr1 245976930 245977044 -36216620 + L1ME2 LINE L1 5285 5405 -759 1923 143 3 13 chr1 245977044 245977345 -36216319 + AluSx SINE Alu 1 298 -14 1313 200 51 115 chr1 245977345 245977692 -36215972 + L1ME2 LINE L1 5405 5773 -391 180 0 0 0 chr1 245977692 245977712 -36215952 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1679 145 13 29 chr1 245977722 245978032 -36215632 - AluJb SINE Alu -7 305 1 1313 200 51 115 chr1 245978032 245978139 -36215525 + L1ME2 LINE L1 5782 5817 -347 21 0 0 0 chr1 245978139 245978160 -36215504 + AT_rich Low_complexity Low_complexity 1 21 0 377 236 0 81 chr1 245978229 245978352 -36215312 + L1ME2 LINE L1 5826 5938 -226 1649 189 3 3 chr1 245978359 245978655 -36215009 + AluJb SINE Alu 1 296 -16 675 153 27 33 chr1 245978762 245978912 -36214752 + L1MA10 LINE L1 6183 6331 -3 241 281 0 16 chr1 245978920 245978984 -36214680 + L2 LINE L2 3210 3272 0 34 32 0 32 chr1 245979113 245979154 -36214510 + AT_rich Low_complexity Low_complexity 1 41 -20 1956 125 14 0 chr1 245979154 245979450 -36214214 + AluSx SINE Alu 1 300 -12 34 32 0 32 chr1 245979450 245979471 -36214193 + AT_rich Low_complexity Low_complexity 41 61 0 632 199 52 7 chr1 245979471 245979607 -36214057 - FLAM_A SINE Alu 0 142 1 2228 74 0 3 chr1 245979643 245979939 -36213725 - AluY SINE Alu -16 295 1 1686 128 13 35 chr1 245979957 245980193 -36213471 - AluSx SINE Alu -6 306 77 2541 97 76 14 chr1 245980193 245980615 -36213049 + LTR7 LTR ERV1 1 448 -2 1686 128 13 35 chr1 245980615 245980691 -36212973 - AluSx SINE Alu -235 77 1 787 156 0 8 chr1 245982370 245982498 -36211166 + Charlie1a DNA MER1_type 43 169 -1286 9483 183 71 18 chr1 245982515 245982642 -36211022 - L1 LINE L1 -1000 5146 5027 1583 180 3 14 chr1 245982642 245982950 -36210714 - AluJb SINE Alu 0 305 1 9483 183 71 18 chr1 245982950 245985053 -36208611 - L1 LINE L1 -1119 5027 2796 305 98 0 0 chr1 245985242 245985293 -36208371 + AluSp/q SINE Alu 253 303 0 370 286 149 19 chr1 245985334 245985488 -36208176 + MIR SINE MIR 16 189 -73 2127 85 7 29 chr1 245985634 245985940 -36207724 - AluSg SINE Alu -11 299 1 3386 60 2 7 chr1 245986346 245986783 -36206881 + LTR7 LTR ERV1 1 435 -15 16847 88 28 16 chr1 245986812 245989256 -36204408 + HERVH LTR ERV1 521 2995 -4718 915 129 27 0 chr1 245989235 245989382 -36204282 + HERVH LTR ERV1 3140 3290 -4423 * 1009 149 0 7 chr1 245989372 245989526 -36204138 + HERVH LTR ERV1 3492 3644 -4069 * 2458 175 12 0 chr1 245989525 245989930 -36203734 + HERVH LTR ERV1 4740 5149 -2564 1356 129 18 40 chr1 245989931 245990156 -36203508 + HERVH LTR ERV1 5600 5819 -1894 * 2547 82 45 13 chr1 245990154 245990534 -36203130 + HERVH LTR ERV1 7322 7713 0 3340 50 0 70 chr1 245990534 245991016 -36202648 + LTR7 LTR ERV1 1 448 -2 325 327 97 0 chr1 245991018 245991131 -36202533 - L1ME4a LINE L1 -256 5865 5742 183 100 0 0 chr1 245991966 245991996 -36201668 + (CA)n Simple_repeat Simple_repeat 2 31 0 246 62 0 0 chr1 245992563 245992595 -36201069 + (TC)n Simple_repeat Simple_repeat 2 33 0 351 0 0 0 chr1 245992595 245992634 -36201030 + (CA)n Simple_repeat Simple_repeat 1 39 0 355 192 10 111 chr1 245992813 245992912 -36200752 - MER5A DNA MER1_type -91 98 10 225 0 0 0 chr1 245993685 245993710 -36199954 + (T)n Simple_repeat Simple_repeat 1 25 0 2233 100 0 0 chr1 245993886 245994215 -36199449 - AluSx SINE Alu 0 329 1 180 0 0 0 chr1 245994931 245994951 -36198713 + (A)n Simple_repeat Simple_repeat 1 20 0 333 326 44 15 chr1 245994951 245995086 -36198578 - MER5A DNA MER1_type -50 139 1 203 289 0 0 chr1 245995437 245995489 -36198175 - MIR SINE MIR -55 207 156 214 370 120 0 chr1 245995995 245996095 -36197569 - MIR SINE MIR -64 144 33 183 309 36 0 chr1 245997526 245997581 -36196083 - MER5A DNA MER1_type 0 189 133 * 223 263 26 26 chr1 245997571 245997647 -36196017 + MIR SINE MIR 52 127 -135 * 282 247 106 12 chr1 245997640 245997725 -36195939 - MER5A DNA MER1_type -79 110 18 1637 183 115 3 chr1 245998163 245998486 -36195178 - MLT1A1 LTR MaLR 0 365 7 773 292 132 3 chr1 245998501 245998843 -36194821 + MLT1J1 LTR MaLR 61 446 0 465 259 14 99 chr1 245998939 245999151 -36194513 - MIR SINE MIR 0 262 69 389 143 0 0 chr1 245999577 245999640 -36194024 + L2 LINE L2 3251 3313 0 2069 100 35 0 chr1 245999812 246000101 -36193563 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr1 246000101 246000123 -36193541 + AT_rich Low_complexity Low_complexity 1 22 0 431 148 28 19 chr1 246000125 246000233 -36193431 + CT-rich Low_complexity Low_complexity 4 112 0 428 167 6 189 chr1 246000656 246000836 -36192828 - L2 LINE L2 0 3313 3167 736 178 104 0 chr1 246000837 246000972 -36192692 + AluJb SINE Alu 2 150 -162 329 107 0 18 chr1 246000979 246001035 -36192629 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2191 82 13 13 chr1 246001035 246001339 -36192325 + AluSg SINE Alu 1 304 -6 24 0 0 0 chr1 246001823 246001847 -36191817 + AT_rich Low_complexity Low_complexity 1 24 0 1594 133 6 63 chr1 246002567 246002882 -36190782 - AluJb SINE Alu -15 297 1 786 228 6 0 chr1 246003048 246003210 -36190454 + MER41D LTR ERV1 395 557 0 1946 131 0 0 chr1 246004626 246004924 -36188740 + AluSx SINE Alu 1 298 -14 1138 133 58 11 chr1 246005191 246005379 -36188285 + AluSx SINE Alu 1 197 -115 819 158 0 0 chr1 246005545 246005678 -36187986 - FLAM_C SINE Alu 0 133 1 345 282 85 97 chr1 246005705 246005953 -36187711 + L2 LINE L2 3014 3258 -55 193 322 17 0 chr1 246005987 246006046 -36187618 + L2 LINE L2 2268 2327 -987 490 319 105 34 chr1 246006078 246006549 -36187115 + L2 LINE L2 2551 3053 -219 536 236 24 8 chr1 246006631 246006758 -36186906 - MER94 DNA DNA -5 129 1 2229 64 3 3 chr1 246006841 246007159 -36186505 - AluY SINE Alu 0 311 1 4882 143 45 22 chr1 246007354 246008300 -36185364 - L1MB5 LINE L1 -9 6165 5197 220 284 181 9 chr1 246008311 246008427 -36185237 + L2 LINE L2 3129 3264 -8 2209 72 24 0 chr1 246008499 246008789 -36184875 + AluSg SINE Alu 1 297 -13 1999 29 37 0 chr1 246010327 246010568 -36183096 - L1PA4 LINE L1 0 6155 5906 2192 111 7 0 chr1 246010675 246010981 -36182683 - AluSx SINE Alu -4 308 1 910 127 73 88 chr1 246011008 246011181 -36182483 - AluSg/x SINE Alu -5 305 134 2314 89 0 0 chr1 246011181 246011484 -36182180 - AluSx SINE Alu -9 303 1 910 127 73 88 chr1 246011484 246011515 -36182149 - AluSg/x SINE Alu -176 134 104 295 194 32 0 chr1 246011623 246011685 -36181979 - MLT1A2 LTR MaLR -304 70 7 762 295 132 3 chr1 246011700 246012042 -36181622 + MLT1J1 LTR MaLR 61 446 0 554 223 15 107 chr1 246012138 246012344 -36181320 - MIR SINE MIR 0 262 76 389 143 0 0 chr1 246012784 246012847 -36180817 + L2 LINE L2 3251 3313 0 2065 113 31 0 chr1 246013019 246013312 -36180352 + AluSq SINE Alu 1 302 -11 201 214 0 24 chr1 246013318 246013360 -36180304 - MIR3 SINE MIR -16 192 152 555 215 9 0 chr1 246013399 246013506 -36180158 - MER5B DNA MER1_type -64 114 7 199 280 240 8 chr1 246013508 246013633 -36180031 - MIR3 SINE MIR -41 167 14 2244 85 0 0 chr1 246013835 246014129 -36179535 + AluSc SINE Alu 1 294 -15 1964 136 10 0 chr1 246014946 246015433 -36178231 + AluSx SINE Alu 1 490 0 216 0 0 0 chr1 246015443 246015467 -36178197 + (GGAA)n Simple_repeat Simple_repeat 4 27 0 563 274 92 55 chr1 246015577 246015748 -36177916 + MER102b DNA MER1_type 39 227 -1201 2127 109 6 10 chr1 246015748 246016061 -36177603 - AluSx SINE Alu 0 312 1 563 274 92 55 chr1 246016061 246016181 -36177483 + MER102b DNA MER1_type 227 341 0 1131 201 52 77 chr1 246016342 246016759 -36176905 - MLT1B LTR MaLR -11 385 15 203 323 54 32 chr1 246016759 246016852 -36176812 + MIR SINE MIR 155 249 -13 1947 132 0 3 chr1 246017028 246017323 -36176341 - AluSx SINE Alu -18 294 1 480 254 39 11 chr1 246017725 246017906 -36175758 + LTR33 LTR ERVL 336 521 0 490 273 45 8 chr1 246019030 246019162 -36174502 + MIR SINE MIR 48 184 -78 2108 109 0 3 chr1 246019211 246019515 -36174149 + AluSc SINE Alu 1 303 -6 764 202 84 63 chr1 246019523 246019917 -36173747 - L1MC4 LINE L1 -10 8032 7549 2065 60 0 0 chr1 246019922 246020172 -36173492 + AluY SINE Alu 1 250 -61 790 227 67 29 chr1 246020181 246020419 -36173245 - L1MC4 LINE L1 -914 7128 6882 407 136 0 0 chr1 246020419 246020485 -36173179 + MLT2B2 LTR ERVL 1 66 -449 307 323 32 19 chr1 246020854 246021012 -36172652 + GA-rich Low_complexity Low_complexity 3 162 0 319 317 5 54 chr1 246021078 246021264 -36172400 + G-rich Low_complexity Low_complexity 3 179 0 1032 144 105 0 chr1 246021357 246021538 -36172126 - AluSx SINE Alu -112 200 1 359 349 20 0 chr1 246021542 246021688 -36171976 - MIR SINE MIR -111 151 3 2227 106 0 0 chr1 246021821 246022132 -36171532 - AluSq SINE Alu -2 311 1 1135 126 0 6 chr1 246022132 246022268 -36171396 - AluSx SINE Alu -177 135 1 664 247 74 32 chr1 246023183 246023373 -36170291 - MIR SINE MIR -30 232 35 24 0 0 0 chr1 246023589 246023613 -36170051 + AT_rich Low_complexity Low_complexity 1 24 0 2400 73 0 0 chr1 246023646 246023934 -36169730 - AluY SINE Alu -7 304 17 1520 150 88 22 chr1 246023949 246024222 -36169442 - AluJb SINE Alu -21 291 1 2115 97 18 0 chr1 246024255 246024556 -36169108 - AluSp SINE Alu 0 306 1 456 229 111 35 chr1 246024698 246024842 -36168822 - MIR SINE MIR -56 206 52 1968 115 27 3 chr1 246025388 246025684 -36167980 - AluSx SINE Alu -9 303 1 359 286 59 53 chr1 246026240 246026404 -36167260 - MER5A DNA MER1_type 0 178 22 22 70 0 0 chr1 246026466 246026509 -36167155 + AT_rich Low_complexity Low_complexity 1 43 0 2043 120 13 16 chr1 246026609 246026917 -36166747 - AluSx SINE Alu -5 307 1 315 253 72 0 chr1 246026938 246027021 -36166643 + HsTC2 DNA Tc2 1 89 -1809 237 132 79 0 chr1 246027041 246027079 -36166585 + HsTC2 DNA Tc2 1230 1270 -628 1053 221 132 61 chr1 246027250 246027530 -36166134 - AluJb SINE Alu -2 300 1 1047 183 0 0 chr1 246027951 246028126 -36165538 - AluJb SINE Alu -1 311 137 28 0 0 0 chr1 246028834 246028862 -36164802 + AT_rich Low_complexity Low_complexity 1 28 0 1880 150 13 19 chr1 246028872 246029185 -36164479 + AluSx SINE Alu 1 311 -1 409 208 13 101 chr1 246029784 246029863 -36163801 - L1MC5 LINE L1 -104 7857 7795 2147 90 14 7 chr1 246029863 246030151 -36163513 - AluSq SINE Alu -23 290 1 409 208 13 101 chr1 246030151 246030220 -36163444 - L1MC5 LINE L1 -166 7795 7722 2349 117 0 0 chr1 246030362 246030671 -36162993 - AluSg SINE Alu -1 309 1 252 100 0 0 chr1 246030752 246030792 -36162872 + (CA)n Simple_repeat Simple_repeat 1 40 0 188 364 43 31 chr1 246030946 246031108 -36162556 - L2 LINE L2 0 3313 3150 2152 123 10 3 chr1 246031404 246031704 -36161960 + AluSx SINE Alu 1 302 -10 1533 133 0 0 chr1 246031757 246031967 -36161697 - AluSx SINE Alu -39 273 64 4804 93 23 27 chr1 246031967 246032212 -36161452 - L1PA11 LINE L1 -108 6066 5821 2294 95 17 0 chr1 246032212 246032508 -36161156 - AluSq SINE Alu -12 301 1 4804 93 23 27 chr1 246032508 246032971 -36160693 - L1PA11 LINE L1 -353 5821 5361 853 82 25 0 chr1 246032972 246033094 -36160570 - AluY SINE Alu -13 298 174 23 0 0 0 chr1 246033097 246033120 -36160544 + AT_rich Low_complexity Low_complexity 1 23 0 1563 44 0 6 chr1 246033164 246033345 -36160319 - AluY SINE Alu -131 180 1 1276 107 54 40 chr1 246033345 246033569 -36160095 - L1PA11 LINE L1 -779 5367 5141 559 259 88 73 chr1 246033573 246033817 -36159847 + L1ME3A LINE L1 3978 4217 -1929 864 207 106 48 chr1 246033817 246034025 -36159639 + MER58A DNA MER1_type 1 220 -4 559 259 88 73 chr1 246034025 246034052 -36159612 + L1ME3A LINE L1 4217 4242 -1904 2231 54 0 96 chr1 246034052 246034386 -36159278 + AluY SINE Alu 1 302 -9 559 259 88 73 chr1 246034386 246034603 -36159061 + L1ME3A LINE L1 4242 4474 -1672 1344 171 0 14 chr1 246034615 246034831 -36158833 + AluJb SINE Alu 81 293 -19 1807 152 0 4 chr1 246035419 246035688 -36157976 - AluSx SINE Alu -44 268 1 500 202 128 27 chr1 246036115 246036303 -36157361 + L1ME3A LINE L1 4631 4837 -1309 2005 149 7 0 chr1 246036346 246036647 -36157017 + AluSx SINE Alu 1 303 -9 368 286 27 18 chr1 246036658 246036770 -36156894 - MLT1I LTR MaLR -49 360 248 303 243 76 139 chr1 246036953 246037130 -36156534 + L1ME3A LINE L1 4909 5095 -1051 284 71 0 0 chr1 246037130 246037172 -36156492 - Alu SINE Alu 0 302 261 2235 76 0 76 chr1 246037174 246037491 -36156173 - AluSg SINE Alu -17 293 1 303 243 76 139 chr1 246037491 246037702 -36155962 + L1ME3A LINE L1 5096 5314 -832 411 293 126 25 chr1 246037753 246038240 -36155424 + L1ME3A LINE L1 5387 5927 -243 232 212 76 51 chr1 246038358 246038476 -36155188 + L1MC4 LINE L1 7920 8040 -2 836 127 8 0 chr1 246038621 246038739 -36154925 + AluSg/x SINE Alu 172 290 -20 1524 170 218 15 chr1 246039412 246039824 -36153840 - LTR54B LTR ERV1 -2 496 1 2051 113 32 0 chr1 246039855 246040138 -36153526 + AluSp SINE Alu 1 292 -21 486 132 0 0 chr1 246040172 246040248 -36153416 + AluSc SINE Alu 226 301 -8 2123 163 24 0 chr1 246040486 246040823 -36152841 - MER7A DNA MER2_type -2 344 2 2536 59 0 3 chr1 246041374 246041677 -36151987 - AluY SINE Alu -8 303 2 1986 160 0 3 chr1 246041858 246042170 -36151494 - AluSx SINE Alu -1 311 1 1942 154 0 7 chr1 246042350 246042649 -36151015 + AluSx SINE Alu 6 302 -10 203 158 0 0 chr1 246042822 246042860 -36150804 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr1 246043988 246044009 -36149655 + AT_rich Low_complexity Low_complexity 1 21 0 1666 183 3 25 chr1 246044501 246044818 -36148846 - AluJo SINE Alu -2 310 1 2024 125 38 0 chr1 246045311 246045600 -36148064 + AluSx SINE Alu 1 300 -12 639 296 66 4 chr1 246045604 246045830 -36147834 + MIR SINE MIR 23 262 0 1244 113 70 47 chr1 246046069 246046187 -36147477 - MER2 DNA MER2_type -121 224 97 1483 149 36 0 chr1 246046187 246046408 -36147256 + MER30 DNA MER1_type 1 229 -1 1244 113 70 47 chr1 246046408 246046502 -36147162 - MER2 DNA MER2_type -248 97 7 1819 127 6 118 chr1 246046953 246047283 -36146381 + AluSx SINE Alu 1 293 -9 12774 118 32 27 chr1 246047452 246048881 -36144783 + Tigger1 DNA MER2_type 374 1795 -623 2197 86 0 30 chr1 246048881 246049183 -36144481 - AluY SINE Alu -18 293 1 12774 118 32 27 chr1 246049183 246049597 -36144067 + Tigger1 DNA MER2_type 1795 2205 -213 2355 91 3 3 chr1 246049597 246049904 -36143760 - AluSq SINE Alu -6 307 1 12774 118 32 27 chr1 246049904 246050033 -36143631 + Tigger1 DNA MER2_type 2205 2360 -58 1844 109 0 4 chr1 246050033 246050280 -36143384 - AluSc SINE Alu -62 247 2 12774 118 32 27 chr1 246050280 246050340 -36143324 + Tigger1 DNA MER2_type 2360 2418 0 280 338 94 68 chr1 246050343 246050609 -36143055 + L2 LINE L2 2948 3220 -52 181 327 0 55 chr1 246051650 246051705 -36141959 + L3b LINE CR1 1511 1562 -21 263 154 0 0 chr1 246052524 246052563 -36141101 - MSTB LTR MaLR 0 426 388 1085 83 0 0 chr1 246052564 246052697 -36140967 + AluSq/x SINE Alu 1 133 -179 1879 122 25 18 chr1 246052714 246053035 -36140629 + AluSg SINE Alu 1 323 0 1991 152 14 0 chr1 246053041 246053167 -36140497 + AluSx SINE Alu 1 124 -188 420 20 0 0 chr1 246053167 246053216 -36140448 + (CA)n Simple_repeat Simple_repeat 2 50 0 1991 152 14 0 chr1 246053216 246053386 -36140278 + AluSx SINE Alu 124 301 -11 2013 160 83 0 chr1 246053386 246053748 -36139916 - MSTB LTR MaLR -34 392 1 413 343 27 0 chr1 246053856 246054002 -36139662 + MIR3 SINE MIR 31 180 -28 1560 157 24 114 chr1 246054523 246054900 -36138764 - MER7A DNA MER2_type 0 346 6 23 33 0 0 chr1 246055187 246055217 -36138447 + AT_rich Low_complexity Low_complexity 1 30 0 3348 223 76 19 chr1 246055403 246056939 -36136725 + L1M3c LINE L1 1 1449 -4761 2023 146 0 28 chr1 246056939 246057260 -36136404 - AluSx SINE Alu 0 312 1 3348 223 76 19 chr1 246057260 246058133 -36135531 + L1M3c LINE L1 1449 2271 -3939 1822 102 3 37 chr1 246058236 246058530 -36135134 + AluSq SINE Alu 28 311 -2 586 228 6 84 chr1 246058723 246058814 -36134850 + MIR SINE MIR 65 162 -100 2001 134 43 0 chr1 246058814 246058930 -36134734 + AluSp SINE Alu 1 110 -203 2187 73 0 31 chr1 246058930 246059218 -36134446 + AluY SINE Alu 1 279 -32 411 21 0 0 chr1 246059220 246059268 -36134396 + (CA)n Simple_repeat Simple_repeat 2 49 0 2001 134 43 0 chr1 246059268 246059447 -36134217 + AluSp SINE Alu 110 312 -1 586 228 6 84 chr1 246059447 246059522 -36134142 + MIR SINE MIR 162 218 -44 799 290 6 0 chr1 246059657 246059833 -36133831 - MER45A DNA AcHobo -1 177 1 918 85 50 28 chr1 246059938 246060079 -36133585 + HERVH LTR ERV1 2688 2831 -4882 6807 135 13 11 chr1 246060079 246061694 -36131970 + HERVH LTR ERV1 3358 4910 -2287 1520 162 19 0 chr1 246061694 246061959 -36131705 + HERVH LTR ERV1 5747 6016 -1697 * 3553 113 16 20 chr1 246061952 246062511 -36131153 + HERVH LTR ERV1 7157 7713 0 1393 193 130 68 chr1 246062511 246062935 -36130729 + LTR7 LTR ERV1 1 450 0 295 81 0 0 chr1 246062956 246062993 -36130671 + tRNA-Phe-TTC tRNA tRNA 2 38 -38 2075 143 3 13 chr1 246063005 246063319 -36130345 - AluJb SINE Alu -1 311 1 368 182 0 0 chr1 246063349 246063415 -36130249 - MER82 DNA MER2_type 0 653 588 486 258 16 8 chr1 246063439 246063563 -36130101 - Tigger5 DNA MER2_type -2194 129 5 543 219 10 0 chr1 246063564 246063660 -36130004 - MER82 DNA MER2_type -556 97 1 896 137 28 77 chr1 246063923 246064105 -36129559 - FRAM SINE Alu -3 173 1 1913 127 4 0 chr1 246064459 246064727 -36128937 - AluSq SINE Alu -4 309 41 1253 193 0 0 chr1 246064734 246064941 -36128723 - AluJb SINE Alu -19 293 87 1875 159 3 0 chr1 246065187 246065489 -36128175 - AluJo SINE Alu -9 303 1 17803 24 0 0 chr1 246065519 246067582 -36126082 - L1P LINE L1 -1142 5004 2942 3070 24 0 0 chr1 246067582 246067900 -36125764 + L1PA2 LINE L1 5819 6154 -1 222 37 0 0 chr1 246067919 246067946 -36125718 + (A)n Simple_repeat Simple_repeat 1 27 0 1268 128 28 0 chr1 246068516 246068696 -36124968 + AluSx SINE Alu 9 193 -119 1279 142 55 9 chr1 246069118 246069336 -36124328 - AluJb SINE Alu -18 294 67 464 97 0 0 chr1 246069336 246069408 -36124256 + AluSp/q SINE Alu 240 311 -2 2140 131 20 0 chr1 246070168 246070474 -36123190 + AluSp SINE Alu 1 312 -1 2269 101 3 0 chr1 246070527 246070833 -36122831 - AluSg SINE Alu -3 307 1 595 108 0 0 chr1 246071205 246071288 -36122376 - AluSc SINE Alu -15 294 212 227 156 0 0 chr1 246071389 246071434 -36122230 + Alu SINE Alu 254 298 -1 2403 170 40 2 chr1 246071445 246071899 -36121765 - L1MB3 LINE L1 -137 6046 5576 205 204 140 54 chr1 246071935 246072028 -36121636 + L2 LINE L2 3159 3259 -13 218 316 82 0 chr1 246072369 246072467 -36121197 - L2 LINE L2 -1 3271 3166 195 347 80 0 chr1 246072964 246073039 -36120625 + L3b LINE CR1 1478 1558 -25 202 268 0 0 chr1 246073227 246073283 -36120381 + C-rich Low_complexity Low_complexity 2 57 0 5947 123 26 6 chr1 246073406 246074314 -36119350 - Tigger1 DNA MER2_type -1490 928 2 958 180 59 84 chr1 246074531 246074610 -36119054 - LTR37A LTR ERV1 -2 424 345 2150 113 0 7 chr1 246074610 246074912 -36118752 - AluSx SINE Alu -12 300 1 958 180 59 84 chr1 246074912 246075035 -36118629 - LTR37A LTR ERV1 -81 345 230 2001 101 10 14 chr1 246075035 246075365 -36118299 - AluSg SINE Alu 0 310 9 958 180 59 84 chr1 246075365 246075483 -36118181 - LTR37A LTR ERV1 -196 230 111 3058 176 65 30 chr1 246075904 246076106 -36117558 - MER82 DNA MER2_type 0 653 460 1463 173 0 0 chr1 246076106 246076361 -36117303 - AluJb SINE Alu -47 265 11 3058 176 65 30 chr1 246076361 246076788 -36116876 - MER82 DNA MER2_type -193 460 2 343 268 150 33 chr1 246077784 246077937 -36115727 + MIR3 SINE MIR 4 174 -34 330 313 34 50 chr1 246078274 246078453 -36115211 + MIR SINE MIR 46 221 -41 280 358 19 22 chr1 246078480 246078635 -36115029 - MIR SINE MIR -68 140 33 211 282 0 14 chr1 246078948 246079019 -36114645 + (CCCTAA)n Simple_repeat Simple_repeat 2 71 0 1226 199 60 18 chr1 246079750 246080032 -36113632 + AluJo SINE Alu 1 294 -18 335 269 106 28 chr1 246080652 246080793 -36112871 + MIR3 SINE MIR 19 170 -38 913 191 69 6 chr1 246081159 246081332 -36112332 - MER5A DNA MER1_type -5 184 1 272 286 48 24 chr1 246083730 246083856 -36109808 + MER20B DNA MER1_type 54 182 -601 190 231 0 0 chr1 246083893 246083932 -36109732 + MIR3 SINE MIR 163 201 -7 1571 207 70 44 chr1 246086949 246087335 -36106329 - MSTD LTR MaLR 0 396 1 300 291 157 8 chr1 246087388 246087522 -36106142 - L2 LINE L2 -212 3060 2907 761 268 75 25 chr1 246087576 246087815 -36105849 + MIR SINE MIR 9 259 -3 1727 151 0 60 chr1 246088738 246089055 -36104609 - AluJb SINE Alu -14 298 1 2063 125 10 0 chr1 246089134 246089431 -36104233 - AluSx SINE Alu -12 300 1 907 254 20 77 chr1 246089455 246089754 -36103910 - MLT1J LTR MaLR -229 282 1 225 0 0 0 chr1 246090747 246090772 -36102892 + (GA)n Simple_repeat Simple_repeat 2 26 0 2147 107 7 0 chr1 246091009 246091318 -36102346 + AluSq SINE Alu 1 311 -2 1922 208 26 33 chr1 246094894 246095322 -36098342 + MLT2B1 LTR ERVL 96 520 0 970 194 66 186 chr1 246095329 246095376 -36098288 - L1MC4 LINE L1 -1163 6879 6828 2092 107 10 0 chr1 246095376 246095674 -36097990 - AluSg SINE Alu -9 301 1 970 194 66 186 chr1 246095674 246096157 -36097507 - L1MC4 LINE L1 -1214 6828 6413 631 353 5 14 chr1 246096219 246096437 -36097227 + LTR67 LTR ERVL 41 256 -301 618 314 14 18 chr1 246096554 246096774 -36096890 + LTR67 LTR ERVL 330 548 -9 1923 148 0 13 chr1 246096838 246097148 -36096516 - AluJb SINE Alu -6 306 1 2056 112 7 0 chr1 246097191 246097486 -36096178 - AluSp SINE Alu -3 310 14 562 168 308 7 chr1 246097544 246097687 -36095977 + MER5A DNA MER1_type 4 189 0 277 266 25 52 chr1 246097687 246097832 -36095832 - LTR16C LTR ERVL -16 474 292 379 342 26 0 chr1 246098296 246098451 -36095213 - HERV16 LTR ERVL -1233 4531 4373 204 40 0 0 chr1 246098516 246098541 -36095123 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1704 162 0 24 chr1 246098973 246099270 -36094394 - AluJo SINE Alu -22 290 1 1463 319 48 12 chr1 246099286 246099884 -36093780 - HERV16 LTR ERVL -730 5034 4415 505 224 0 95 chr1 246099947 246100094 -36093570 - MER94 DNA DNA 0 134 2 623 371 26 38 chr1 246100095 246100379 -36093285 - HERV16 LTR ERVL -3444 1552 1275 1976 145 0 7 chr1 246100379 246100682 -36092982 - AluSx SINE Alu -11 301 1 623 371 26 38 chr1 246100682 246100903 -36092761 - HERV16 LTR ERVL -3721 1275 1053 2820 176 2 46 chr1 246100965 246101529 -36092135 - MLT2B3 LTR ERVL 0 554 16 28 0 0 0 chr1 246102596 246102624 -36091040 + AT_rich Low_complexity Low_complexity 1 28 0 1945 125 0 7 chr1 246102624 246102920 -36090744 - AluSx SINE Alu -18 294 1 601 242 120 95 chr1 246103281 246103847 -36089817 - L1MC5 LINE L1 -10 7951 7372 484 159 0 11 chr1 246103872 246103960 -36089704 - AluJb SINE Alu -179 133 47 276 245 47 19 chr1 246103961 246104067 -36089597 - L1MC5 LINE L1 -591 7370 7262 486 321 134 11 chr1 246104169 246104527 -36089137 - L1MEd LINE L1 -2346 3783 3382 1860 143 17 0 chr1 246104534 246104821 -36088843 + AluSq SINE Alu 1 292 -21 1112 155 0 10 chr1 246104827 246105020 -36088644 - AluJb SINE Alu -2 310 120 887 263 68 52 chr1 246105049 246105418 -36088246 - L1MEd LINE L1 -2739 3390 3016 1746 148 7 20 chr1 246106414 246106718 -36086946 - AluJb SINE Alu -12 300 1 996 279 64 54 chr1 246106724 246107132 -36086532 - L1MEd LINE L1 -5317 802 391 335 286 48 0 chr1 246107168 246107273 -36086391 + MIR SINE MIR 153 262 0 1357 173 7 44 chr1 246107328 246107438 -36086226 + AluJb SINE Alu 1 114 -198 2218 123 128 31 chr1 246107438 246107788 -36085876 + MSTA LTR MaLR 1 394 -34 2182 110 0 0 chr1 246107788 246108096 -36085568 - AluSg SINE Alu -2 308 1 2218 123 128 31 chr1 246108096 246108135 -36085529 + MSTA LTR MaLR 394 428 0 1357 173 7 44 chr1 246108135 246108295 -36085369 + AluJb SINE Alu 114 261 -51 1915 153 126 79 chr1 246108631 246108676 -36084988 - MLT1C LTR MaLR 0 467 426 2093 118 0 3 chr1 246108676 246108981 -36084683 + AluSx SINE Alu 3 306 -6 1915 153 126 79 chr1 246108981 246109380 -36084284 - MLT1C LTR MaLR -41 426 2 447 283 83 22 chr1 246109640 246109820 -36083844 - MIR SINE MIR -25 237 47 1233 190 12 97 chr1 246111017 246111157 -36082507 - AluJo SINE Alu -9 303 153 5440 103 24 0 chr1 246111157 246111285 -36082379 - L1PB2 LINE L1 -2 6149 6026 2278 97 0 3 chr1 246111285 246111595 -36082069 - AluSx SINE Alu -3 309 1 5440 103 24 0 chr1 246111595 246111853 -36081811 - L1PB2 LINE L1 -125 6026 5776 2373 77 0 3 chr1 246111853 246112164 -36081500 - AluY SINE Alu -1 310 1 5440 103 24 0 chr1 246112164 246113002 -36080662 - L1PB2 LINE L1 -375 5776 4936 1233 190 12 97 chr1 246113002 246113192 -36080472 - AluJo SINE Alu -159 153 1 195 224 20 0 chr1 246113249 246113298 -36080366 - MIR SINE MIR -137 71 22 448 301 40 25 chr1 246113540 246113739 -36079925 - MIR3 SINE MIR -1 207 6 221 28 83 0 chr1 246114680 246114716 -36078948 + (CCCCAG)n Simple_repeat Simple_repeat 5 43 0 233 56 0 28 chr1 246115517 246115553 -36078111 + (CCG)n Simple_repeat Simple_repeat 2 36 0 221 390 29 7 chr1 246116932 246117068 -36076596 - L3b LINE CR1 -153 1430 1292 292 343 34 14 chr1 246117354 246117500 -36076164 - L3 LINE CR1 -111 1466 1318 500 283 49 54 chr1 246117587 246117792 -36075872 + MIR3 SINE MIR 2 205 -3 461 293 120 80 chr1 246117895 246117938 -36075726 - L3 LINE CR1 -340 1237 1197 1624 183 3 13 chr1 246117938 246118249 -36075415 - AluJb SINE Alu -4 308 1 461 293 120 80 chr1 246118249 246118466 -36075198 - L3 LINE CR1 -380 1197 990 2142 104 3 0 chr1 246118466 246118754 -36074910 - AluSg SINE Alu -21 289 1 461 293 120 80 chr1 246118754 246118977 -36074687 - L3 LINE CR1 -587 990 734 566 275 62 46 chr1 246120656 246120885 -36072779 - L1ME LINE L1 -557 5564 5329 2704 133 2 42 chr1 246120885 246121358 -36072306 - L1MB3 LINE L1 -7 6176 5723 566 275 62 46 chr1 246121358 246121435 -36072229 - L1ME LINE L1 -792 5329 5255 1751 131 64 0 chr1 246121654 246121936 -36071728 - AluSx SINE Alu -12 300 1 627 230 61 43 chr1 246121946 246122164 -36071500 - MIR SINE MIR -11 251 32 1832 124 0 49 chr1 246122758 246123065 -36070599 - AluJo SINE Alu -20 292 1 180 97 0 0 chr1 246123303 246123334 -36070330 + (TG)n Simple_repeat Simple_repeat 2 32 0 270 125 0 0 chr1 246123456 246123504 -36070160 + (CA)n Simple_repeat Simple_repeat 1 48 0 962 79 32 0 chr1 246124597 246124723 -36068941 - AluJb SINE Alu -181 131 2 332 248 15 58 chr1 246125503 246125640 -36068024 + CT-rich Low_complexity Low_complexity 4 134 0 1923 139 14 0 chr1 246125647 246125927 -36067737 - AluSx SINE Alu -22 290 7 192 321 64 18 chr1 246128186 246128295 -36065369 + MER5A DNA MER1_type 73 186 -3 430 168 18 9 chr1 246128784 246128897 -36064767 + (TCCA)n Simple_repeat Simple_repeat 4 117 0 1961 157 17 0 chr1 246128955 246129248 -36064416 - AluSx SINE Alu -14 298 1 755 180 8 0 chr1 246129297 246129419 -36064245 + FLAM_A SINE Alu 1 123 -10 1512 126 8 72 chr1 246130814 246131077 -36062587 - AluSx SINE Alu -66 246 1 275 263 246 30 chr1 246131948 246132245 -36061419 - L2 LINE L2 -723 2591 2231 2271 75 13 13 chr1 246133220 246133525 -36060139 - AluY SINE Alu -6 305 1 416 86 0 0 chr1 246133529 246133587 -36060077 - Alu SINE Alu -20 289 232 867 75 0 9 chr1 246133587 246133693 -36059971 - AluSq/x SINE Alu -170 142 38 2314 88 0 3 chr1 246134901 246135197 -36058467 + AluSx SINE Alu 1 295 -17 2250 103 3 7 chr1 246136309 246136611 -36057053 + AluSx SINE Alu 1 301 -11 2121 102 7 3 chr1 246137285 246137601 -36056063 + AluSp SINE Alu 2 318 0 236 290 9 28 chr1 246139091 246139198 -36054466 + A-rich Low_complexity Low_complexity 2 106 0 2498 63 3 0 chr1 246139309 246139610 -36054054 + AluY SINE Alu 1 302 -9 1925 147 14 7 chr1 246139626 246139919 -36053745 + AluJb SINE Alu 1 295 -17 315 0 0 0 chr1 246139919 246139954 -36053710 + (TA)n Simple_repeat Simple_repeat 1 35 0 308 289 0 0 chr1 246141192 246141268 -36052396 - L2 LINE L2 -4 3268 3193 1707 169 6 35 chr1 246141391 246141704 -36051960 + AluJb SINE Alu 1 304 -8 2521 62 0 16 chr1 246141803 246142108 -36051556 - AluY SINE Alu -11 300 1 1944 112 25 7 chr1 246142178 246142454 -36051210 - AluSg1 SINE Alu -28 281 1 969 120 23 0 chr1 246142463 246142596 -36051068 - AluJo SINE Alu -176 136 1 32 26 0 0 chr1 246142726 246142765 -36050899 + AT_rich Low_complexity Low_complexity 1 39 0 516 297 153 9 chr1 246143293 246143515 -36050149 - MIR SINE MIR -8 254 1 14740 127 39 7 chr1 246144517 246145918 -36047746 - Tigger1 DNA MER2_type -1 2417 909 1907 144 10 10 chr1 246145918 246146217 -36047447 + AluJb SINE Alu 1 299 -13 14740 127 39 7 chr1 246146217 246147157 -36046507 - Tigger1 DNA MER2_type -1509 909 1 975 166 0 28 chr1 246147197 246147378 -36046286 + AluSx SINE Alu 1 176 -136 279 164 82 16 chr1 246148095 246148156 -36045508 + MER103 DNA DNA 49 113 -53 980 270 161 14 chr1 246148232 246148654 -36045010 + L2 LINE L2 2825 3308 -5 2362 80 7 10 chr1 246148654 246148956 -36044708 + AluY SINE Alu 1 301 -10 213 326 39 23 chr1 246149031 246149160 -36044504 - L2 LINE L2 -5 3267 3137 1238 161 5 10 chr1 246149390 246149589 -36044075 + AluJb SINE Alu 108 305 -7 2387 97 3 3 chr1 246150324 246150635 -36043029 - AluSp SINE Alu -2 311 1 21 0 0 0 chr1 246151929 246151950 -36041714 + AT_rich Low_complexity Low_complexity 1 21 0 291 255 0 41 chr1 246152054 246152152 -36041512 + L1ME4a LINE L1 5947 6040 -81 2425 88 0 16 chr1 246152240 246152558 -36041106 + AluSq SINE Alu 1 313 0 2469 76 0 3 chr1 246152761 246153063 -36040601 + AluY SINE Alu 1 301 -10 421 290 135 10 chr1 246154019 246154226 -36039438 - MIR SINE MIR -7 255 23 25 0 0 0 chr1 246156864 246156889 -36036775 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr1 246157492 246157514 -36036150 + GC_rich Low_complexity Low_complexity 1 22 0 2353 78 3 0 chr1 246157972 246158267 -36035397 - AluSq SINE Alu 0 313 18 412 163 28 106 chr1 246208267 246208408 -35985256 - HAL1 LINE L1 -1021 1486 1357 523 297 87 40 chr1 246208451 246208774 -35984890 - HAL1 LINE L1 -1777 730 393 748 132 0 0 chr1 246209205 246209326 -35984338 - MER41A LTR ERV1 0 554 434 1444 119 10 0 chr1 246209326 246209527 -35984137 + AluSx SINE Alu 1 203 -109 2312 86 3 7 chr1 246209860 246210161 -35983503 - AluSx SINE Alu -12 300 1 235 368 53 23 chr1 246210275 246210408 -35983256 + MIR SINE MIR 15 151 -111 189 69 0 0 chr1 246210980 246210998 -35982666 + (A)n Simple_repeat Simple_repeat 1 21 -8 1384 133 20 8 chr1 246210998 246211253 -35982411 + L1MA1 LINE L1 6045 6302 0 189 69 0 0 chr1 246211253 246211263 -35982401 + (A)n Simple_repeat Simple_repeat 20 29 0 997 281 69 67 chr1 246211325 246211891 -35981773 - L1MEc LINE L1 -5794 602 36 2133 104 3 3 chr1 246211891 246212179 -35981485 - AluSg SINE Alu -22 288 1 338 178 14 0 chr1 246212188 246212261 -35981403 + Charlie5 DNA MER1_type 2512 2585 -27 216 358 68 27 chr1 246212262 246212410 -35981254 - L2 LINE L2 -1093 2221 2068 341 155 0 0 chr1 246212422 246212480 -35981184 + AluJ/FLAM SINE Alu 1 58 -244 993 225 19 0 chr1 246212707 246212920 -35980744 + Charlie1a DNA MER1_type 5 221 -1234 4895 163 45 34 chr1 246212953 246214087 -35979577 + Charlie1a DNA MER1_type 287 1432 -23 1255 253 86 14 chr1 246214187 246214677 -35978987 - L1 LINE L1 -2198 3948 3424 1761 180 26 51 chr1 246214678 246215145 -35978519 - L1M4 LINE L1 -5300 1242 788 806 149 8 15 chr1 246215156 246215290 -35978374 - FLAM_C SINE Alu 0 133 1 818 246 0 0 chr1 246215293 246215460 -35978204 - AluSg/x SINE Alu -3 309 143 1745 90 4 0 chr1 246215460 246215705 -35977959 - LTR14 LTR ERVK -2 546 301 6819 146 14 6 chr1 246215805 246217712 -35975952 - L1MA3 LINE L1 -398 5907 3985 1333 115 4 2 chr1 246217714 246217958 -35975706 - AluSc SINE Alu -12 297 1 1200 138 18 0 chr1 246217958 246218175 -35975489 - L1MA3 LINE L1 -2156 3990 3770 19848 61 3 1 chr1 246218275 246220894 -35972770 - HERVK9 LTR ERVK -1369 4547 1923 1911 121 4 7 chr1 246221173 246221446 -35972218 + AluSg SINE Alu 1 272 -38 3549 101 0 4 chr1 246221446 246221950 -35971714 - MER9 LTR ERVK -9 502 1 1394 36 4 1 chr1 246221950 246222197 -35971467 - HERVK9 LTR ERVK 0 5916 5635 4572 63 8 0 chr1 246222293 246222891 -35970773 - HERVK9 LTR ERVK -282 5634 5032 1899 125 0 42 chr1 246223347 246223500 -35970164 - AluSx SINE Alu -36 276 139 2385 76 3 13 chr1 246223500 246223814 -35969850 - AluY SINE Alu 0 311 1 1899 125 0 42 chr1 246223814 246223948 -35969716 - AluSx SINE Alu -173 139 1 231 227 15 15 chr1 246224853 246224919 -35968745 - MLT1K LTR MaLR -4 584 519 459 0 0 0 chr1 246225531 246225582 -35968082 + (CA)n Simple_repeat Simple_repeat 2 52 0 9871 186 38 3 chr1 246226094 246228486 -35965178 - L1 LINE L1 -1701 5864 3390 320 0 25 0 chr1 246228486 246228526 -35965138 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 6052 83 16 28 chr1 246228526 246229540 -35964124 - SVA Other Other -517 1363 508 440 102 18 141 chr1 246230032 246230089 -35963575 + LTR41 LTR ERVL 649 711 -84 1976 116 24 20 chr1 246230089 246230382 -35963282 - AluSx SINE Alu -18 294 1 440 102 18 141 chr1 246230382 246230468 -35963196 + LTR41 LTR ERVL 711 794 -1 21 82 0 0 chr1 246230737 246230786 -35962878 + AT_rich Low_complexity Low_complexity 1 49 0 2389 81 7 0 chr1 246231181 246231479 -35962185 - AluSq SINE Alu -13 300 1 251 250 67 0 chr1 246231573 246231633 -35962031 - L2 LINE L2 -36 3236 3173 276 353 53 0 chr1 246231996 246232129 -35961535 + L2 LINE L2 3097 3236 -36 1619 166 72 36 chr1 246232403 246232782 -35960882 - Charlie1 DNA MER1_type -16 2745 2348 2346 65 7 10 chr1 246232782 246233075 -35960589 - AluY SINE Alu -19 292 1 1619 166 72 36 chr1 246233075 246233110 -35960554 - Charlie1 DNA MER1_type -413 2348 2316 370 298 76 18 chr1 246233477 246233702 -35959962 + L1ME1 LINE L1 11 248 -6611 864 235 66 27 chr1 246234267 246234702 -35958962 + L1ME1 LINE L1 1189 1632 -5227 * 891 132 6 36 chr1 246234701 246234868 -35958796 + L1MB7 LINE L1 5706 5867 -317 974 200 23 35 chr1 246234932 246235192 -35958472 + L1MB7 LINE L1 5628 5884 -300 710 213 16 60 chr1 246235189 246235316 -35958348 + L1ME1 LINE L1 5180 5292 -1665 * 2236 83 3 3 chr1 246235316 246235606 -35958058 + AluY SINE Alu 1 290 -21 710 213 16 60 chr1 246235606 246235727 -35957937 + L1ME1 LINE L1 5292 5417 -1540 245 135 0 0 chr1 246235737 246235774 -35957890 + tRNA-Phe-TTC tRNA tRNA 1 37 -39 1690 180 23 13 chr1 246235802 246236107 -35957557 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr1 246236107 246236128 -35957536 + AT_rich Low_complexity Low_complexity 1 21 0 1613 237 77 11 chr1 246236137 246236707 -35956957 + L1ME1 LINE L1 5426 6033 -924 2726 184 91 40 chr1 246236817 246237635 -35956029 + L1ME1 LINE L1 6017 6866 -111 2233 121 3 3 chr1 246237635 246237942 -35955722 + AluSx SINE Alu 1 307 -5 2726 184 91 40 chr1 246237942 246238010 -35955654 + L1ME1 LINE L1 6866 6929 -48 409 234 36 0 chr1 246238070 246238181 -35955483 + L1MC5 LINE L1 7802 7916 -45 277 234 10 33 chr1 246238345 246238446 -35955218 + MLT1L LTR MaLR 72 273 -273 327 241 44 51 chr1 246238494 246238631 -35955033 + MLT1J LTR MaLR 350 485 -26 23 0 0 0 chr1 246239352 246239375 -35954289 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr1 246239621 246239667 -35953997 + AT_rich Low_complexity Low_complexity 1 46 0 354 219 52 21 chr1 246239994 246240090 -35953574 + FAM SINE Alu 36 134 -41 1252 164 86 4 chr1 246240190 246240422 -35953242 - AluJo SINE Alu -61 251 1 365 288 129 7 chr1 246240426 246240565 -35953099 + MIR SINE MIR 29 184 -78 2248 96 0 0 chr1 246240565 246240888 -35952776 + AluSc SINE Alu 1 323 0 2082 126 3 0 chr1 246241002 246241303 -35952361 + AluSx SINE Alu 1 302 -10 2066 123 57 88 chr1 246241674 246242079 -35951585 - MSTB2 LTR MaLR 0 457 66 1747 164 26 23 chr1 246242079 246242389 -35951275 - AluJb SINE Alu -1 311 1 2066 123 57 88 chr1 246242389 246242437 -35951227 - MSTB2 LTR MaLR -391 66 18 1998 104 19 0 chr1 246243086 246243346 -35950318 - AluSg SINE Alu -45 265 1 13044 65 49 34 chr1 246244113 246245191 -35948473 - HERVK9 LTR ERVK -3980 1936 753 192 219 0 94 chr1 246245191 246245255 -35948409 - MER5B DNA MER1_type -61 117 60 13044 65 49 34 chr1 246245255 246246020 -35947644 - HERVK9 LTR ERVK -5163 753 1 3581 122 4 2 chr1 246246020 246246530 -35947134 - MER9 LTR ERVK 0 511 1 27 0 0 0 chr1 246246552 246246579 -35947085 + AT_rich Low_complexity Low_complexity 1 27 0 507 176 108 10 chr1 246247410 246247512 -35946152 - AluJb SINE Alu -13 299 188 2244 112 0 16 chr1 246247671 246247985 -35945679 + AluSc SINE Alu 1 309 0 635 175 205 67 chr1 246248043 246248086 -35945578 - LTR54B LTR ERV1 -160 338 302 2093 114 0 0 chr1 246248086 246248391 -35945273 + AluSq SINE Alu 21 313 0 635 175 205 67 chr1 246248391 246248644 -35945020 - LTR54B LTR ERV1 -196 302 1 2142 208 38 36 chr1 246248650 246248857 -35944807 - LTR23-int LTR ERV1 -398 7139 6934 2645 16 7 3 chr1 246248857 246249161 -35944503 - AluY SINE Alu -6 305 1 2142 208 38 36 chr1 246249161 246249457 -35944207 - LTR23-int LTR ERV1 -603 6934 6635 1024 161 4 113 chr1 246249555 246249829 -35943835 - LTR23-int LTR ERV1 -697 4174 3931 315 206 0 52 chr1 246250127 246250224 -35943440 - LTR23-int LTR ERV1 -3315 1808 1717 2356 103 0 0 chr1 246250436 246250736 -35942928 + AluSg SINE Alu 1 300 -10 1932 156 15 3 chr1 246250865 246251198 -35942466 + MER54A LTR ERVL 1 337 -564 765 93 115 22 chr1 246251198 246251337 -35942327 + AluSg/x SINE Alu 147 298 -12 1313 107 0 0 chr1 246251338 246251515 -35942149 + AluSg/x SINE Alu 131 307 -5 362 156 0 16 chr1 246251515 246251579 -35942085 - MLT1B LTR MaLR -94 296 234 1075 174 71 9 chr1 246251625 246251849 -35941815 - MLT1B LTR MaLR -152 238 1 3329 182 36 18 chr1 246251849 246252754 -35940910 - L1M4 LINE L1 -707 6886 5966 1212 148 0 0 chr1 246252823 246252999 -35940665 + AluSg/x SINE Alu 133 308 -4 865 198 0 42 chr1 246252999 246253216 -35940448 - L1M4 LINE L1 -1722 5843 5636 1324 168 0 0 chr1 246253217 246253420 -35940244 + AluJb SINE Alu 1 203 -109 1894 173 0 7 chr1 246253533 246253828 -35939836 + AluJb SINE Alu 1 293 -19 654 191 14 0 chr1 246253828 246253969 -35939695 - L1M4 LINE L1 -1924 5641 5499 395 365 86 60 chr1 246254078 246254171 -35939493 - L2 LINE L2 -2 3270 3181 2418 78 3 3 chr1 246254171 246254477 -35939187 + AluSq SINE Alu 1 306 -7 395 365 86 60 chr1 246254477 246254684 -35938980 - L2 LINE L2 -91 3181 2962 247 333 142 28 chr1 246254784 246255102 -35938562 + L2 LINE L2 1822 2175 -1139 1798 230 46 71 chr1 246255404 246255595 -35938069 + L1M4 LINE L1 2357 2551 -3595 2007 155 3 0 chr1 246255595 246255891 -35937773 + AluSx SINE Alu 1 297 -15 1798 230 46 71 chr1 246255891 246256104 -35937560 + L1M4 LINE L1 2551 2768 -3378 2270 110 3 0 chr1 246256104 246256404 -35937260 + AluSp SINE Alu 1 301 -12 1798 230 46 71 chr1 246256404 246256875 -35936789 + L1M4 LINE L1 2768 3211 -2935 2449 235 50 43 chr1 246256881 246257024 -35936640 + L1M4 LINE L1 29 170 -6372 2340 103 0 3 chr1 246257024 246257335 -35936329 + AluSg SINE Alu 1 310 0 2449 235 50 43 chr1 246257335 246257956 -35935708 + L1M4 LINE L1 170 798 -5744 967 124 0 21 chr1 246257956 246258101 -35935563 + FLAM_C SINE Alu 2 143 0 3327 89 10 22 chr1 246258130 246258626 -35935038 + LTR14 LTR ERVK 1 490 -58 1025 72 12 66 chr1 246258627 246258793 -35934871 + LTR14 LTR ERVK 6 162 -386 1990 119 0 10 chr1 246259266 246259559 -35934105 - AluSp SINE Alu -23 290 1 22 0 0 0 chr1 246259704 246259726 -35933938 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr1 246259726 246259753 -35933911 + (T)n Simple_repeat Simple_repeat 1 27 0 348 274 9 18 chr1 246260036 246260149 -35933515 - L1M4 LINE L1 -2292 5273 5162 430 170 62 36 chr1 246260162 246260274 -35933390 + Tigger1 DNA MER2_type 1 115 -2303 10313 189 92 14 chr1 246260276 246262821 -35930843 - L1PA15 LINE L1 0 7603 4670 2350 106 7 0 chr1 246262821 246263123 -35930541 - AluSq SINE Alu -9 304 1 10313 189 92 14 chr1 246263123 246264299 -35929365 - L1PA15 LINE L1 -2933 4670 3587 1096 234 31 0 chr1 246264302 246264593 -35929071 - L1PA15 LINE L1 -5019 2562 2263 1601 146 36 13 chr1 246264595 246264903 -35928761 + Tigger1 DNA MER2_type 2104 2418 0 353 286 106 12 chr1 246265060 246265581 -35928083 - L1M4 LINE L1 -2634 4931 4341 1518 239 29 57 chr1 246265613 246266124 -35927540 - MLT1D LTR MaLR -2 503 7 430 152 0 0 chr1 246266206 246266272 -35927392 - AluJ/FRAM SINE Alu -16 296 231 2374 167 42 16 chr1 246266374 246266514 -35927150 - L1M4 LINE L1 -3404 4161 4026 2007 151 0 16 chr1 246266514 246266831 -35926833 - AluSx SINE Alu 0 312 1 2374 167 42 16 chr1 246266831 246266895 -35926769 - L1M4 LINE L1 -3539 4026 3965 1641 199 26 0 chr1 246266895 246267197 -35926467 - AluJb SINE Alu -2 310 1 2374 167 42 16 chr1 246267197 246267792 -35925872 - L1M4 LINE L1 -3600 3965 3341 1667 162 0 23 chr1 246267792 246268094 -35925570 + MER1B DNA MER1_type 1 295 -44 709 123 28 0 chr1 246268091 246268197 -35925467 + MER1B DNA MER1_type 231 339 0 * 441 216 17 85 chr1 246268198 246268374 -35925290 + L1MD2 LINE L1 5920 6083 -276 329 245 0 21 chr1 246268454 246268548 -35925116 + L1MD2 LINE L1 6058 6149 -210 441 274 32 13 chr1 246268549 246268706 -35924958 + L1MD2 LINE L1 6198 6357 -2 5671 161 15 6 chr1 246268739 246269091 -35924573 - L1PB1 LINE L1 -5 6862 6515 234 0 0 0 chr1 246269091 246269117 -35924547 + (TG)n Simple_repeat Simple_repeat 2 27 0 5671 161 15 6 chr1 246269117 246270103 -35923561 - L1PB1 LINE L1 -352 6515 5539 2302 109 0 0 chr1 246270103 246270406 -35923258 - AluSp SINE Alu -10 303 1 5671 161 15 6 chr1 246270406 246270793 -35922871 - L1PB1 LINE L1 -1328 5539 5113 324 0 0 0 chr1 246270793 246270829 -35922835 + (TATG)n Simple_repeat Simple_repeat 2 37 0 5671 161 15 6 chr1 246270829 246271013 -35922651 - L1PB1 LINE L1 -1754 5113 4932 3433 144 33 10 chr1 246270991 246271856 -35921808 - L1PB1 LINE L1 -3767 3095 2155 * 676 287 20 8 chr1 246271882 246272133 -35921531 + L1M4 LINE L1 3410 3663 -2483 7529 149 14 12 chr1 246272172 246273544 -35920120 + L1P LINE L1 3405 4779 -1367 195 129 0 0 chr1 246274287 246274318 -35919346 + (TA)n Simple_repeat Simple_repeat 2 32 0 1513 138 0 17 chr1 246274550 246274790 -35918874 - MER46A DNA MER2_type 0 236 1 207 302 32 16 chr1 246275003 246275066 -35918598 - L3b LINE CR1 -10 1573 1510 326 324 119 22 chr1 246275114 246275299 -35918365 - L2 LINE L2 0 3313 3111 238 261 72 54 chr1 246275291 246275402 -35918262 - L3 LINE CR1 -133 1444 1332 * 1914 114 11 4 chr1 246275581 246275853 -35917811 + AluSg SINE Alu 1 274 -36 1426 191 46 146 chr1 246275886 246276420 -35917244 + LTR49 LTR ERV1 13 476 -119 2118 120 7 0 chr1 246276420 246276721 -35916943 - AluSq SINE Alu -8 305 3 1426 191 46 146 chr1 246276721 246276818 -35916846 + LTR49 LTR ERV1 476 581 -14 1484 176 8 0 chr1 246277063 246277325 -35916339 - MER41B LTR ERV1 -371 264 1 6153 159 45 14 chr1 246279003 246280668 -35912996 - L1MC1 LINE L1 0 6333 4627 1702 80 0 0 chr1 246280983 246281208 -35912456 + L1P LINE L1 2 226 -5920 633 227 78 7 chr1 246281313 246281467 -35912197 + L1MC1 LINE L1 6168 6332 -1 346 249 271 28 chr1 246281700 246281881 -35911783 - MIR SINE MIR -27 235 11 2094 137 0 6 chr1 246282035 246282349 -35911315 + AluSx SINE Alu 1 312 0 27 62 0 0 chr1 246282504 246282552 -35911112 + AT_rich Low_complexity Low_complexity 1 48 0 414 313 232 18 chr1 246282584 246282817 -35910847 - L1ME LINE L1 -298 5823 5523 1437 150 0 17 chr1 246282817 246283057 -35910607 - MER46A DNA MER2_type 0 236 1 414 313 232 18 chr1 246283057 246283095 -35910569 - L1ME LINE L1 -598 5523 5494 397 275 78 31 chr1 246283101 246283294 -35910370 - L1ME LINE L1 -702 5468 5267 289 252 118 7 chr1 246283362 246283497 -35910167 - L1ME4a LINE L1 -24 6097 5948 346 330 52 52 chr1 246283709 246283942 -35909722 + L2 LINE L2 3032 3264 -8 415 125 0 69 chr1 246284380 246284452 -35909212 - AluJ/FLAM SINE Alu -235 67 1 656 261 189 57 chr1 246284710 246284988 -35908676 + MLT1J LTR MaLR 11 356 -155 673 165 8 25 chr1 246284988 246285109 -35908555 + FLAM_A SINE Alu 4 122 -11 656 261 189 57 chr1 246285109 246285217 -35908447 + MLT1J LTR MaLR 356 448 -63 5525 120 11 6 chr1 246286105 246286931 -35906733 + L1PA16 LINE L1 5320 6149 -17 2969 215 94 14 chr1 246286969 246287859 -35905805 + L1ME2 LINE L1 5177 6154 -10 13642 119 50 52 chr1 246288468 246288930 -35904734 + Tigger1 DNA MER2_type 6 467 -1951 1503 161 3 86 chr1 246288930 246289234 -35904430 + AluJb SINE Alu 1 279 -33 13642 119 50 52 chr1 246289234 246290013 -35903651 + Tigger1 DNA MER2_type 467 1246 -1172 2159 99 14 0 chr1 246290013 246290297 -35903367 - AluSg SINE Alu -22 288 1 13642 119 50 52 chr1 246290297 246290690 -35902974 + Tigger1 DNA MER2_type 1246 1638 -780 1830 131 88 0 chr1 246290690 246290964 -35902700 - AluSx SINE Alu -14 298 1 13642 119 50 52 chr1 246290964 246291744 -35901920 + Tigger1 DNA MER2_type 1638 2417 -1 2777 189 30 51 chr1 246292138 246292761 -35900903 - MER90 LTR ERV1 -4 610 1 405 289 151 21 chr1 246292812 246293119 -35900545 + L1MC4 LINE L1 7487 7912 -83 25 31 0 0 chr1 246293294 246293326 -35900338 + AT_rich Low_complexity Low_complexity 1 32 0 30377 27 4 0 chr1 246293409 246297837 -35895827 - L1PA3 LINE L1 0 6155 1712 675 185 57 6 chr1 246297840 246297997 -35895667 - L1MC2 LINE L1 -1 6343 6179 678 169 28 28 chr1 246298357 246298535 -35895129 + MER104 DNA MER2_type 3 180 0 2111 130 7 0 chr1 246298586 246298885 -35894779 + AluSq SINE Alu 1 301 -12 1952 111 0 4 chr1 246300009 246300270 -35893394 + AluSq SINE Alu 1 260 -53 323 221 32 21 chr1 246300512 246300607 -35893057 + Charlie1 DNA MER1_type 2657 2752 -9 374 159 0 43 chr1 246300876 246300945 -35892719 - MER46A DNA MER2_type -84 152 87 * 425 121 45 0 chr1 246300900 246300966 -35892698 + MER46A DNA MER2_type 168 236 0 596 189 47 0 chr1 246301114 246301241 -35892423 + FLAM_A SINE Alu 1 133 0 919 281 163 17 chr1 246302846 246303312 -35890352 - HAL1 LINE L1 -1972 535 2 2126 129 0 0 chr1 246303658 246303952 -35889712 - AluSx SINE Alu -18 294 1 201 288 62 0 chr1 246305583 246305663 -35888001 - MIR SINE MIR -26 236 152 425 345 36 12 chr1 246305902 246306067 -35887597 - MIR SINE MIR -91 171 3 190 258 145 0 chr1 246306229 246306291 -35887373 - L2 LINE L2 -6 3266 3196 240 263 0 0 chr1 246306519 246306595 -35887069 + CT-rich Low_complexity Low_complexity 3 78 0 317 241 35 0 chr1 246307000 246307058 -35886606 - MER2 DNA MER2_type -285 60 1 649 295 29 0 chr1 246307166 246307410 -35886254 - L1M4 LINE L1 -2100 4046 3796 390 316 57 53 chr1 246308193 246308440 -35885224 - MLT1K LTR MaLR -120 468 221 646 255 43 1 chr1 246308781 246308973 -35884691 - L1ME3A LINE L1 0 6170 5959 561 200 43 0 chr1 246309013 246309128 -35884536 - FLAM_C SINE Alu -12 121 2 39 0 0 0 chr1 246309444 246309483 -35884181 + AT_rich Low_complexity Low_complexity 1 39 0 1322 174 91 25 chr1 246310288 246310564 -35883100 - AluJo SINE Alu -18 294 1 24 32 0 0 chr1 246311910 246311941 -35881723 + AT_rich Low_complexity Low_complexity 1 31 0 400 261 216 0 chr1 246314482 246314704 -35878960 - L1ME4a LINE L1 -82 6039 5770 254 242 144 38 chr1 246314752 246314884 -35878780 - L1ME4a LINE L1 -418 5703 5558 315 0 0 0 chr1 246314955 246314990 -35878674 + (TG)n Simple_repeat Simple_repeat 2 36 0 1877 153 26 29 chr1 246315908 246316249 -35877415 + MER58B DNA MER1_type 2 341 0 223 191 0 21 chr1 246317509 246317556 -35876108 + (TATG)n Simple_repeat Simple_repeat 3 48 0 353 278 38 45 chr1 246317573 246317706 -35875958 - MIR3 SINE MIR -45 163 32 2237 95 3 3 chr1 246317817 246318113 -35875551 - AluSp SINE Alu -17 296 1 2056 113 3 0 chr1 246319108 246319399 -35874265 - AluSx SINE Alu -12 300 9 2222 178 61 28 chr1 246320350 246320845 -35872819 - L1ME1 LINE L1 -8 6158 5648 1361 194 69 3 chr1 246320845 246321165 -35872499 - L1ME1 LINE L1 -1370 4776 4436 634 238 31 6 chr1 246321166 246321326 -35872338 - FRAM SINE Alu -3 173 10 903 240 43 13 chr1 246321436 246321669 -35871995 - MIR SINE MIR -21 241 2 263 339 214 18 chr1 246322005 246322224 -35871440 + L2 LINE L2 2907 3194 -78 2005 128 14 3 chr1 246322224 246322512 -35871152 - AluJb SINE Alu -21 291 1 263 339 214 18 chr1 246322512 246322572 -35871092 + L2 LINE L2 3194 3241 -31 725 248 96 4 chr1 246322619 246322869 -35870795 - L1MC3 LINE L1 -1626 6159 5887 3742 228 40 48 chr1 246322873 246323024 -35870640 - L1MC3 LINE L1 -816 5330 5179 1972 142 0 13 chr1 246323024 246323326 -35870338 - AluJb SINE Alu -1 311 14 3742 228 40 48 chr1 246323326 246323340 -35870324 - L1MC3 LINE L1 -967 5179 5166 1003 171 24 0 chr1 246323340 246323510 -35870154 - FAM SINE Alu 0 175 2 3742 228 40 48 chr1 246323510 246324382 -35869282 - L1MC3 LINE L1 -980 5166 4303 665 23 12 0 chr1 246324382 246324468 -35869196 - L1PA4 LINE L1 -3 6152 6066 3742 228 40 48 chr1 246324468 246324765 -35868899 - L1MC3 LINE L1 -1843 4303 4005 23 0 0 0 chr1 246324777 246324800 -35868864 + AT_rich Low_complexity Low_complexity 1 23 0 2034 97 3 47 chr1 246324800 246324951 -35868713 - AluSx SINE Alu -26 286 153 2172 100 3 3 chr1 246324951 246325242 -35868422 - AluSc SINE Alu -18 291 1 2034 97 3 47 chr1 246325242 246325389 -35868275 - AluSx SINE Alu -159 153 1 1433 196 40 59 chr1 246326140 246326512 -35867152 - MLT1A1 LTR MaLR 0 365 1 282 285 41 32 chr1 246326518 246326641 -35867023 - Tigger8 DNA MER2_type -19 647 524 981 144 133 5 chr1 246327388 246327583 -35866081 + MER46B DNA MER2_type 1 95 -141 24 32 0 0 chr1 246328440 246328471 -35865193 + AT_rich Low_complexity Low_complexity 1 31 0 290 267 70 0 chr1 246328486 246328572 -35865092 - MER103 DNA DNA -19 147 56 2104 142 0 0 chr1 246328845 246329155 -35864509 - AluSx SINE Alu -2 310 1 2230 114 0 0 chr1 246329167 246329466 -35864198 - AluSq SINE Alu -14 299 1 2410 71 10 0 chr1 246329475 246329772 -35863892 - AluY SINE Alu -11 300 1 2346 97 0 0 chr1 246329772 246330072 -35863592 - AluSg SINE Alu -10 300 1 218 114 114 23 chr1 246330539 246330583 -35863081 + L2 LINE L2 3262 3309 -4 459 289 58 43 chr1 246330677 246330885 -35862779 + MIR SINE MIR 2 212 -50 1772 156 33 3 chr1 246331344 246331644 -35862020 - LOR1b LTR ERV1 0 461 153 543 162 0 10 chr1 246331644 246331743 -35861921 + MER4A LTR ERV1 1 98 -566 1772 143 0 23 chr1 246331801 246332101 -35861563 + MER4A LTR ERV1 372 664 0 600 199 96 7 chr1 246332104 246332250 -35861414 - LOR1a LTR ERV1 -338 159 1 264 197 180 0 chr1 246332485 246332546 -35861118 + L2 LINE L2 3147 3218 -54 2389 97 0 3 chr1 246333001 246333311 -35860353 + AluSc SINE Alu 1 309 0 683 152 16 180 chr1 246333467 246333536 -35860128 - MER3 DNA MER1_type 0 209 130 1616 161 26 4 chr1 246333536 246333662 -35860002 + AluJo SINE Alu 10 132 -180 393 75 0 0 chr1 246333662 246333715 -35859949 + (TG)n Simple_repeat Simple_repeat 1 53 0 1616 161 26 4 chr1 246333715 246333855 -35859809 + AluJo SINE Alu 132 282 -30 683 152 16 180 chr1 246333855 246334035 -35859629 - MER3 DNA MER1_type -79 130 1 225 280 80 30 chr1 246334210 246334310 -35859354 - MIR SINE MIR -70 192 88 482 44 15 0 chr1 246334491 246334559 -35859105 - MER41A LTR ERV1 -86 468 400 2342 86 3 0 chr1 246335088 246335378 -35858286 - AluSq SINE Alu -22 291 1 1353 110 0 0 chr1 246336339 246336512 -35857152 + AluSg/x SINE Alu 125 297 -15 2086 108 0 0 chr1 246337606 246337910 -35855754 - AluSx SINE Alu 0 319 16 23 54 0 0 chr1 246338706 246338743 -35854921 + AT_rich Low_complexity Low_complexity 1 37 0 2460 68 13 0 chr1 246338793 246339100 -35854564 - AluY SINE Alu 0 311 1 27 29 0 0 chr1 246339301 246339335 -35854329 + AT_rich Low_complexity Low_complexity 1 34 0 192 332 90 57 chr1 246339404 246339615 -35854049 + L2 LINE L2 2211 2428 -886 337 318 54 95 chr1 246339786 246340101 -35853563 + L2 LINE L2 2965 3266 -6 2160 118 0 3 chr1 246340822 246341119 -35852545 - AluSx SINE Alu -16 296 1 207 69 0 0 chr1 246341421 246341450 -35852214 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 27 62 0 0 chr1 246341773 246341821 -35851843 + AT_rich Low_complexity Low_complexity 1 48 0 412 181 144 19 chr1 246342138 246342298 -35851366 + LTR50 LTR ERVL 611 790 -5 2225 118 0 0 chr1 246342362 246342649 -35851015 - AluSx SINE Alu -23 289 3 458 289 114 23 chr1 246342977 246343320 -35850344 - L1ME4a LINE L1 -179 5942 5569 1866 168 3 0 chr1 246343380 246343666 -35849998 - AluJb SINE Alu -24 288 2 238 231 60 34 chr1 246343806 246343853 -35849811 - HAL1 LINE L1 -142 2365 2321 2440 99 0 3 chr1 246343853 246344167 -35849497 - AluSq SINE Alu 0 313 1 238 231 60 34 chr1 246344167 246344236 -35849428 - HAL1 LINE L1 -186 2321 2246 318 285 0 58 chr1 246344331 246344468 -35849196 - HAL1b LINE L1 -474 874 746 1716 161 29 0 chr1 246344534 246344814 -35848850 - AluJb SINE Alu -24 288 1 1846 209 37 80 chr1 246345025 246345099 -35848565 + MLT1F LTR MaLR 1 77 -465 1751 176 113 25 chr1 246345099 246345496 -35848168 - MSTB1 LTR MaLR 0 432 1 1846 209 37 80 chr1 246345496 246345985 -35847679 + MLT1F LTR MaLR 77 540 -2 413 106 15 0 chr1 246346088 246346154 -35847510 + Alu SINE Alu 1 67 -243 353 261 31 8 chr1 246346271 246346401 -35847263 + MLT1F-int LTR MaLR 1237 1369 -2 846 232 11 88 chr1 246346403 246346675 -35846989 + MLT1F LTR MaLR 1 251 -291 392 186 18 53 chr1 246346684 246346797 -35846867 - L1MC4 LINE L1 -17 8025 7917 329 198 12 0 chr1 246346800 246346881 -35846783 + CT-rich Low_complexity Low_complexity 1 82 0 1018 163 5 33 chr1 246346947 246347131 -35846533 - AluJb SINE Alu -5 307 129 1590 230 69 105 chr1 246347134 246347668 -35845996 - L1MC4 LINE L1 -150 7892 7419 1793 191 96 21 chr1 246347668 246348138 -35845526 - MLT1D LTR MaLR 0 505 1 1590 230 69 105 chr1 246348138 246348747 -35844917 - L1MC4 LINE L1 -623 7419 6790 371 216 198 30 chr1 246348753 246348920 -35844744 + LTR41 LTR ERVL 1 195 -578 288 257 137 62 chr1 246349120 246349346 -35844318 + LTR41 LTR ERVL 521 763 -10 269 305 92 24 chr1 246349356 246349520 -35844144 - L1MC4 LINE L1 -1254 6788 6614 387 233 67 28 chr1 246350127 246350307 -35843357 + LTR41 LTR ERVL 1 187 -586 273 156 0 0 chr1 246350571 246350616 -35843048 - Alu SINE Alu -254 45 1 2259 114 0 0 chr1 246350729 246351036 -35842628 + AluSx SINE Alu 1 307 -5 644 242 25 0 chr1 246351371 246351491 -35842173 + L2 LINE L2 3150 3272 0 23 0 0 0 chr1 246351497 246351520 -35842144 + AT_rich Low_complexity Low_complexity 1 23 0 187 294 188 0 chr1 246351716 246351801 -35841863 + L3 LINE CR1 1175 1275 -302 291 299 137 0 chr1 246351803 246351920 -35841744 + MER94 DNA DNA 1 133 -1 518 354 47 20 chr1 246351935 246352189 -35841475 + L3 LINE CR1 1282 1542 -35 507 232 16 0 chr1 246352536 246352661 -35841003 + L1MD3 LINE L1 7810 7936 -59 3166 161 94 13 chr1 246353261 246353806 -35839858 + L1MDa LINE L1 1824 2450 -4090 2090 149 3 0 chr1 246353806 246354101 -35839563 + AluSx SINE Alu 1 296 -16 3166 161 94 13 chr1 246354101 246354320 -35839344 + L1MDa LINE L1 2450 2650 -3890 315 109 10 83 chr1 246354330 246354522 -35839142 + (TA)n Simple_repeat Simple_repeat 2 179 0 3747 247 83 9 chr1 246354551 246355982 -35837682 + L1MDa LINE L1 2652 4188 -2352 23 68 0 0 chr1 246355982 246356026 -35837638 + AT_rich Low_complexity Low_complexity 1 44 0 3010 228 74 43 chr1 246356028 246356960 -35836704 - L1 LINE L1 -2923 3405 2504 2094 112 3 20 chr1 246356960 246357263 -35836401 + AluSx SINE Alu 1 298 -14 3010 228 74 43 chr1 246357263 246358509 -35835155 - L1 LINE L1 -3824 2504 1060 1404 200 26 4 chr1 246358509 246358774 -35834890 - AluJo SINE Alu -18 294 24 4068 185 62 47 chr1 246358807 246358832 -35834832 - L1 LINE L1 -4257 1071 1048 2022 152 13 3 chr1 246358832 246359141 -35834523 - AluSx SINE Alu 0 312 1 4068 185 62 47 chr1 246359141 246360000 -35833664 - L1 LINE L1 -4280 1048 167 188 35 35 0 chr1 246360000 246360029 -35833635 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 4068 185 62 47 chr1 246360029 246360167 -35833497 - L1 LINE L1 -5161 167 33 1139 249 96 26 chr1 246360166 246360740 -35832924 + L1MDa LINE L1 4716 5329 -1211 * 2275 125 0 0 chr1 246360762 246361065 -35832599 + AluSx SINE Alu 1 303 -9 2370 128 25 5 chr1 246361107 246361512 -35832152 - L1MA2 LINE L1 0 6304 5892 701 196 15 74 chr1 246361783 246362053 -35831611 - SVA Other Other -520 866 613 5438 69 35 57 chr1 246362102 246362987 -35830677 - SVA Other Other -520 866 1 216 200 0 0 chr1 246363010 246363055 -35830609 + G-rich Low_complexity Low_complexity 53 97 0 3171 108 42 9 chr1 246363056 246363605 -35830059 - L1M1 LINE L1 -4169 3396 2830 * 9193 201 30 16 chr1 246363604 246365561 -35828103 - L1MEc LINE L1 -5567 1998 15 1511 269 99 26 chr1 246365559 246366484 -35827180 + L1MEc LINE L1 2006 2998 -4748 * 2244 253 79 19 chr1 246366512 246366915 -35826749 - L1M4 LINE L1 -2877 3269 2892 2217 84 24 10 chr1 246366915 246367213 -35826451 - AluY SINE Alu -9 302 1 2244 253 79 19 chr1 246367213 246367872 -35825792 - L1M4 LINE L1 -3254 2892 2143 2855 64 5 8 chr1 246370339 246370712 -35822952 + L1PA6 LINE L1 5778 6149 -5 187 339 15 0 chr1 246370743 246370808 -35822856 - L2 LINE L2 0 3272 3207 2097 148 0 0 chr1 246371029 246371327 -35822337 - AluSx SINE Alu -14 298 1 1697 157 18 25 chr1 246372009 246372289 -35821375 - AluJo SINE Alu -34 278 1 206 303 99 14 chr1 246373747 246373863 -35819801 + MIR SINE MIR 7 133 -75 1324 169 23 60 chr1 246374253 246374554 -35819110 - AluJo SINE Alu -8 304 15 2009 61 4 4 chr1 246375426 246375694 -35817970 - AluY SINE Alu 0 305 38 408 295 51 19 chr1 246375719 246375875 -35817789 + MIR SINE MIR 36 196 -66 23 0 0 0 chr1 246376318 246376341 -35817323 + AT_rich Low_complexity Low_complexity 1 23 0 30 45 0 0 chr1 246376546 246376590 -35817074 + AT_rich Low_complexity Low_complexity 1 44 0 2330 90 3 3 chr1 246376591 246376891 -35816773 - AluSx SINE Alu -12 300 1 286 221 35 58 chr1 246377643 246377729 -35815935 + MIR3 SINE MIR 101 184 -24 435 211 296 0 chr1 246378852 246378994 -35814670 + MER5A DNA MER1_type 6 189 0 1352 128 0 78 chr1 246379179 246379421 -35814243 + AluSx SINE Alu 51 273 -39 399 286 32 16 chr1 246379427 246379553 -35814111 + MER117 DNA MER1_type 6 133 -64 378 181 64 32 chr1 246379870 246379964 -35813700 + MIR3 SINE MIR 108 204 -4 250 301 103 15 chr1 246380537 246380673 -35812991 + L2 LINE L2 3160 3307 -6 241 321 19 0 chr1 246381018 246381126 -35812538 + MIR SINE MIR 57 165 -63 2291 105 0 0 chr1 246381205 246381510 -35812154 + AluSq SINE Alu 1 305 -8 234 286 95 24 chr1 246382031 246382115 -35811549 - L2 LINE L2 -35 3237 3148 187 310 46 23 chr1 246382359 246382446 -35811218 - MIR3 SINE MIR -17 191 103 385 343 140 4 chr1 246382471 246382707 -35810957 - L3 LINE CR1 -213 1364 1097 26 0 0 0 chr1 246383044 246383070 -35810594 + AT_rich Low_complexity Low_complexity 1 26 0 247 219 0 0 chr1 246383689 246383730 -35809934 - L2 LINE L2 -18 3254 3214 610 183 0 0 chr1 246433742 246433846 -35759818 + AluJb SINE Alu 193 296 -16 238 262 37 28 chr1 246434769 246434876 -35758788 - L2 LINE L2 -611 2703 2596 401 152 25 0 chr1 246435339 246435418 -35758246 + L1MC4 LINE L1 7961 8041 -1 802 211 23 12 chr1 246435442 246435613 -35758051 + MER5A DNA MER1_type 17 189 0 218 247 45 67 chr1 246438380 246438469 -35755195 - L2 LINE L2 -23 3249 3163 251 331 67 1 chr1 246438557 246438657 -35755007 - MIR SINE MIR -67 141 36 1642 186 24 0 chr1 246439862 246440152 -35753512 + AluSx SINE Alu 1 297 -15 467 278 69 34 chr1 246440432 246440662 -35753002 + HAL1b LINE L1 345 589 -759 1602 188 52 33 chr1 246440662 246441029 -35752635 - MLT1A2 LTR MaLR 0 374 1 467 278 69 34 chr1 246441029 246441089 -35752575 + HAL1b LINE L1 589 645 -703 1477 228 47 6 chr1 246441319 246441639 -35752025 + MLT1A1 LTR MaLR 1 333 -32 2494 239 92 23 chr1 246441767 246442676 -35750988 + L1MC5 LINE L1 6556 7528 -433 369 0 0 0 chr1 246442860 246442901 -35750763 + (TG)n Simple_repeat Simple_repeat 2 42 0 549 225 95 47 chr1 246442973 246443142 -35750522 - MER91B DNA MER1_type 0 190 14 225 0 0 0 chr1 246444874 246444899 -35748765 + (A)n Simple_repeat Simple_repeat 1 25 0 2288 78 4 0 chr1 246445381 246445662 -35748002 + AluSx SINE Alu 1 282 -30 996 83 0 0 chr1 246445664 246445797 -35747867 + AluY SINE Alu 178 310 -1 206 32 32 0 chr1 246446235 246446266 -35747398 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1703 25 0 0 chr1 246447471 246447669 -35745995 - L1P LINE L1 -1080 5066 4869 1916 52 0 0 chr1 246447669 246447898 -35745766 + L1PA3 LINE L1 5920 6152 -3 185 0 40 0 chr1 246447912 246447937 -35745727 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 704 139 0 0 chr1 246449224 246449325 -35744339 + FRAM SINE Alu 62 162 -14 316 277 107 47 chr1 246450645 246450898 -35742766 - MER31-int LTR ERV1 -1459 5342 5075 206 346 0 0 chr1 246451416 246451494 -35742170 + GA-rich Low_complexity Low_complexity 3 80 0 252 270 48 0 chr1 246451744 246451807 -35741857 - MER31-int LTR ERV1 -4459 477 412 1234 201 86 43 chr1 246453275 246453554 -35740110 - AluJb SINE Alu -21 291 1 241 229 0 0 chr1 246453746 246453794 -35739870 - HAL1 LINE L1 -665 1842 1795 391 221 97 21 chr1 246453830 246453975 -35739689 - HAL1 LINE L1 -806 1701 1546 374 265 68 14 chr1 246454090 246454426 -35739238 - HAL1 LINE L1 -1149 1358 977 664 236 166 49 chr1 246454482 246454879 -35738785 - MLT1G LTR MaLR 0 555 111 1092 162 91 36 chr1 246454879 246454906 -35738758 - Charlie5 DNA MER1_type 0 2624 2600 2426 92 0 7 chr1 246454906 246455210 -35738454 + AluSx SINE Alu 1 302 -10 1092 162 91 36 chr1 246455210 246455435 -35738229 - Charlie5 DNA MER1_type -24 2600 2358 2466 75 0 3 chr1 246455435 246455743 -35737921 - AluY SINE Alu -4 307 1 691 224 45 11 chr1 246455774 246455953 -35737711 - Charlie5 DNA MER1_type -2412 200 16 381 257 191 7 chr1 246455974 246456110 -35737554 - MLT1G LTR MaLR -434 161 1 880 270 165 29 chr1 246456112 246456590 -35737074 - HAL1 LINE L1 -1583 924 382 473 238 62 57 chr1 246456694 246456887 -35736777 - HAL1 LINE L1 -2276 231 38 291 256 61 0 chr1 246457046 246457128 -35736536 - L2 LINE L2 -2 3270 3184 197 206 0 0 chr1 246457154 246457188 -35736476 + MER5A DNA MER1_type 42 75 -114 1062 127 0 0 chr1 246457189 246457331 -35736333 + FRAM SINE Alu 1 140 -36 2064 122 0 11 chr1 246457331 246457674 -35735990 - AluSx SINE Alu 0 340 1 22 0 0 0 chr1 246457682 246457704 -35735960 + AT_rich Low_complexity Low_complexity 1 22 0 214 225 0 0 chr1 246457714 246457754 -35735910 - MER5A DNA MER1_type -83 106 67 226 255 0 0 chr1 246457971 246458018 -35735646 - L3 LINE CR1 -7 1570 1524 822 188 0 0 chr1 246458018 246458151 -35735513 + FLAM_C SINE Alu 1 133 0 224 202 242 30 chr1 246458592 246458691 -35734973 + MER5A DNA MER1_type 69 188 -1 33 0 0 0 chr1 246459428 246459461 -35734203 + AT_rich Low_complexity Low_complexity 1 33 0 2807 13 0 3 chr1 246459562 246459868 -35733796 + AluYa5 SINE Alu 1 305 -6 804 225 98 72 chr1 246459974 246460178 -35733486 - L1ME4a LINE L1 -3 6118 5921 2148 100 7 20 chr1 246460178 246460478 -35733186 - AluSp SINE Alu -16 297 2 804 225 98 72 chr1 246460478 246460690 -35732974 - L1ME4a LINE L1 -200 5921 5691 2106 105 14 0 chr1 246460735 246461021 -35732643 - AluSx SINE Alu -22 290 1 415 304 152 31 chr1 246461613 246461968 -35731696 - MLT1I LTR MaLR -8 401 4 535 205 0 57 chr1 246462274 246462396 -35731268 + MER117 DNA MER1_type 2 116 -81 2286 65 41 3 chr1 246462699 246462989 -35730675 - AluY SINE Alu -10 301 1 2268 125 0 6 chr1 246463668 246463981 -35729683 + AluSx SINE Alu 1 311 -1 2354 74 0 20 chr1 246464648 246464972 -35728692 + AluSg SINE Alu 1 310 0 314 308 62 15 chr1 246465117 246465247 -35728417 - MIR3 SINE MIR -15 193 58 2273 111 0 0 chr1 246465325 246465622 -35728042 - AluSq SINE Alu -15 298 2 1283 250 140 19 chr1 246465623 246466380 -35727284 + L2 LINE L2 2466 3313 0 2569 53 0 22 chr1 246466758 246467076 -35726588 - AluY SINE Alu 0 311 1 2115 130 13 0 chr1 246467532 246467832 -35725832 - AluSx SINE Alu -8 304 1 1751 186 63 51 chr1 246469240 246469321 -35724343 - MLT1C LTR MaLR 0 467 388 2108 94 40 3 chr1 246469321 246469618 -35724046 + AluY SINE Alu 1 308 -3 1751 186 63 51 chr1 246469618 246470002 -35723662 - MLT1C LTR MaLR -79 388 8 359 269 94 13 chr1 246470142 246470291 -35723373 - MER103 DNA DNA -1 165 5 22 56 0 0 chr1 246470405 246470441 -35723223 + AT_rich Low_complexity Low_complexity 1 36 0 586 241 40 40 chr1 246471287 246471486 -35722178 + MIR SINE MIR 13 211 -51 2086 140 40 6 chr1 246471655 246472005 -35721659 + THE1C LTR MaLR 14 375 0 1012 277 69 22 chr1 246472136 246472340 -35721324 - L2 LINE L2 -9 3304 3111 306 0 0 0 chr1 246472340 246472374 -35721290 + (TG)n Simple_repeat Simple_repeat 2 35 0 1012 277 69 22 chr1 246472374 246472766 -35720898 - L2 LINE L2 -202 3111 2669 875 203 43 90 chr1 246473020 246473276 -35720388 - MLT1A2 LTR MaLR -130 244 1 434 273 31 37 chr1 246473588 246473749 -35719915 + MER91A DNA MER1_type 29 188 -8 200 248 84 112 chr1 246474140 246474181 -35719483 - L2 LINE L2 -4 3309 3268 2066 108 108 21 chr1 246474181 246474516 -35719148 - THE1B LTR MaLR 0 364 1 200 248 84 112 chr1 246474516 246474664 -35719000 - L2 LINE L2 -45 3268 3128 2298 97 0 23 chr1 246474664 246474973 -35718691 + AluSx SINE Alu 1 302 -10 200 248 84 112 chr1 246474973 246475068 -35718596 - L2 LINE L2 -185 3128 3032 305 227 0 0 chr1 246476406 246476472 -35717192 + MIR SINE MIR 182 247 -15 1254 258 65 38 chr1 246476588 246477049 -35716615 - L2 LINE L2 -1 3312 2865 2030 124 50 0 chr1 246477049 246477332 -35716332 + AluSx SINE Alu 1 297 -15 1254 258 65 38 chr1 246477332 246477530 -35716134 - L2 LINE L2 -448 2865 2632 2056 181 53 90 chr1 246477530 246477766 -35715898 - MLT1D LTR MaLR 0 505 262 2114 103 19 38 chr1 246477766 246478085 -35715579 - AluSq SINE Alu 0 313 1 2056 181 53 90 chr1 246478085 246478372 -35715292 - MLT1D LTR MaLR -243 262 1 1254 258 65 38 chr1 246478372 246478450 -35715214 - L2 LINE L2 -681 2632 2558 186 220 0 20 chr1 246478596 246478646 -35715018 - MIR3 SINE MIR -8 200 152 1871 119 42 16 chr1 246478711 246479021 -35714643 - L1MC1 LINE L1 0 6333 6016 211 336 62 18 chr1 246479054 246479167 -35714497 - L2 LINE L2 -1 3271 3154 591 153 0 85 chr1 246479463 246479581 -35714083 + MLT1B LTR MaLR 283 390 0 225 0 0 0 chr1 246479615 246479640 -35714024 + (T)n Simple_repeat Simple_repeat 1 25 0 192 158 0 0 chr1 246481212 246481250 -35712414 + A-rich Low_complexity Low_complexity 1 38 0 240 185 0 0 chr1 246482035 246482089 -35711575 + T-rich Low_complexity Low_complexity 1 54 0 419 18 0 35 chr1 246482243 246482300 -35711364 + (GAAA)n Simple_repeat Simple_repeat 1 55 0 264 122 0 0 chr1 246482608 246482649 -35711015 + (TG)n Simple_repeat Simple_repeat 2 42 0 406 267 62 82 chr1 246482845 246483235 -35710429 + L2 LINE L2 2921 3302 -11 423 0 0 0 chr1 246483539 246483586 -35710078 + (TA)n Simple_repeat Simple_repeat 1 47 0 193 246 0 16 chr1 246488069 246488130 -35705534 + L2 LINE L2 2486 2545 -769 2086 88 0 75 chr1 246488690 246489024 -35704640 - AluSx SINE Alu 0 313 3 589 237 64 12 chr1 246489150 246489323 -35704341 - MIR SINE MIR 0 262 81 232 186 0 0 chr1 246489336 246489379 -35704285 - MER69 DNA AcHobo -460 2066 2024 1460 246 68 3 chr1 246489410 246489780 -35703884 - MER69 DNA AcHobo -2132 394 1 264 287 7 14 chr1 246489801 246489944 -35703720 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 271 260 41 0 chr1 246490092 246490165 -35703499 - MIR SINE MIR -79 183 108 1539 213 96 74 chr1 246490330 246490818 -35702846 - MLT1J LTR MaLR 0 511 13 256 313 45 9 chr1 246491269 246491381 -35702283 - MIR3 SINE MIR -48 160 45 509 262 31 20 chr1 246491666 246491845 -35701819 - MIR SINE MIR -63 145 15 247 195 0 0 chr1 246491897 246491938 -35701726 + MER91B DNA MER1_type 31 71 -119 204 368 40 0 chr1 246492359 246492435 -35701229 + MIR SINE MIR 38 116 -92 439 234 22 110 chr1 246492758 246492985 -35700679 - L2 LINE L2 0 3313 3107 226 282 14 0 chr1 246493002 246493073 -35700591 + (TG)n Simple_repeat Simple_repeat 1 72 0 609 168 96 16 chr1 246493686 246493811 -35699853 + MLT1H LTR MaLR 80 214 -335 545 248 39 0 chr1 246493814 246493943 -35699721 - FLAM_A SINE Alu -8 134 1 2188 111 0 7 chr1 246494026 246494345 -35699319 + AluSq SINE Alu 1 317 0 470 241 26 9 chr1 246494448 246494564 -35699100 + MLT1H LTR MaLR 416 533 -16 275 274 9 47 chr1 246494667 246494773 -35698891 - MIR SINE MIR -55 207 106 2167 91 39 7 chr1 246494940 246495226 -35698438 - AluSg SINE Alu -15 295 1 280 294 49 42 chr1 246495978 246496121 -35697543 + MIR SINE MIR 36 179 -83 803 265 4 62 chr1 246496640 246496897 -35696767 - MIR SINE MIR 0 262 21 309 248 39 62 chr1 246496886 246497015 -35696649 + MIR SINE MIR 117 242 -20 * 1068 171 18 0 chr1 246497912 246498076 -35695588 + AluJo SINE Alu 1 167 -145 232 288 64 41 chr1 246498103 246498398 -35695266 + HAL1 LINE L1 985 1286 -1221 465 19 0 0 chr1 246498438 246498492 -35695172 + (TA)n Simple_repeat Simple_repeat 1 54 0 2690 90 3 0 chr1 246498492 246498847 -35694817 + L1PB1 LINE L1 5792 6147 -4 23 33 0 0 chr1 246498850 246498880 -35694784 + AT_rich Low_complexity Low_complexity 1 30 0 651 312 68 24 chr1 246498911 246499325 -35694339 + HAL1 LINE L1 1486 1917 -590 557 268 14 67 chr1 246499526 246499587 -35694077 + L2 LINE L2 3116 3179 -134 2214 110 0 7 chr1 246499587 246499878 -35693786 - AluSx SINE Alu -19 293 5 557 268 14 67 chr1 246499878 246500025 -35693639 + L2 LINE L2 3179 3313 0 337 181 343 9 chr1 246500208 246500313 -35693351 - L1ME3A LINE L1 -10 6160 6021 372 312 26 42 chr1 246500336 246500576 -35693088 - L1ME LINE L1 -4931 1650 1290 812 160 77 50 chr1 246500995 246501227 -35692437 - L1MD3 LINE L1 0 7808 7595 25 31 0 0 chr1 246501307 246501339 -35692325 + AT_rich Low_complexity Low_complexity 1 32 0 311 241 128 53 chr1 246501467 246501654 -35692010 + HAL1 LINE L1 2245 2445 -62 1832 176 3 3 chr1 246502469 246502771 -35690893 + AluJo SINE Alu 1 302 -10 329 209 88 0 chr1 246502897 246502988 -35690676 - MLT1D LTR MaLR -406 99 1 240 236 214 0 chr1 246502988 246503077 -35690587 - L2 LINE L2 -361 2952 2845 304 303 68 15 chr1 246503156 246503288 -35690376 - MER5A DNA MER1_type -8 181 43 381 278 30 15 chr1 246503392 246503525 -35690139 + MLT1L LTR MaLR 160 294 -321 357 323 57 10 chr1 246503568 246503760 -35689904 + MLT1L LTR MaLR 413 613 -2 263 222 16 16 chr1 246503911 246503974 -35689690 + L2 LINE L2 3210 3272 0 23 0 0 0 chr1 246504177 246504200 -35689464 + AT_rich Low_complexity Low_complexity 1 23 0 574 181 151 20 chr1 246505702 246505901 -35687763 - L1ME4a LINE L1 0 6121 5897 21 82 0 0 chr1 246506073 246506122 -35687542 + AT_rich Low_complexity Low_complexity 1 49 0 372 281 23 8 chr1 246506135 246506263 -35687401 - L1ME4a LINE L1 -395 5726 5597 183 80 0 0 chr1 246507017 246507042 -35686622 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr1 246507366 246507389 -35686275 + AT_rich Low_complexity Low_complexity 1 23 0 365 143 36 0 chr1 246507807 246507863 -35685801 + AluJ/FLAM SINE Alu 1 58 -244 384 206 82 100 chr1 246508123 246508293 -35685371 + L2 LINE L2 3147 3313 0 673 248 84 14 chr1 246508359 246508573 -35685091 - MIR SINE MIR -23 239 11 333 272 73 29 chr1 246509180 246509316 -35684348 + MIR SINE MIR 106 247 -15 2822 129 22 2 chr1 246509546 246509956 -35683708 - MSTC LTR MaLR -9 419 2 2303 107 3 0 chr1 246509983 246510281 -35683383 + AluSx SINE Alu 1 299 -13 945 245 58 4 chr1 246510854 246511095 -35682569 + MIR SINE MIR 2 255 -7 358 228 33 0 chr1 246511100 246511192 -35682472 - L2 LINE L2 -36 3277 3183 187 259 19 19 chr1 246511337 246511391 -35682273 - L3b LINE CR1 0 1583 1530 2285 105 3 3 chr1 246511421 246511726 -35681938 + AluSq SINE Alu 1 305 -8 182 197 15 91 chr1 246512145 246512211 -35681453 + MER5A DNA MER1_type 30 90 -99 29423 62 26 1 chr1 246512983 246516730 -35676934 - L1P LINE L1 -2296 3850 11 618 215 153 29 chr1 246517413 246517622 -35676042 - MIR SINE MIR -22 240 6 1923 205 27 10 chr1 246517697 246518102 -35675562 + MLT2D LTR ERVL 3 414 0 420 288 108 42 chr1 246518318 246518603 -35675061 - MLT1L LTR MaLR -3 611 231 276 77 0 0 chr1 246518642 246518681 -35674983 + (CTTG)n Simple_repeat Simple_repeat 2 40 0 1393 33 6 6 chr1 246518683 246518863 -35674801 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 250 258 30 30 chr1 246518927 246518993 -35674671 - MLT1J LTR MaLR -331 180 115 1308 194 5 0 chr1 246519071 246519293 -35674371 - MER58A DNA MER1_type 0 224 2 2114 131 0 13 chr1 246519720 246520032 -35673632 + AluSx SINE Alu 1 308 -4 1107 196 28 5 chr1 246520805 246521019 -35672645 - MER58A DNA MER1_type 0 224 6 1228 178 11 0 chr1 246521508 246521699 -35671965 - MER58A DNA MER1_type 0 224 32 1632 324 45 10 chr1 246521706 246522403 -35671261 - L3 LINE CR1 -5 1572 852 364 264 40 34 chr1 246523142 246523290 -35670374 + MLT1J LTR MaLR 1 149 -362 249 224 141 35 chr1 246523355 246523440 -35670224 + MLT1J LTR MaLR 337 430 -81 422 18 18 0 chr1 246525285 246525340 -35668324 + (TTTTA)n Simple_repeat Simple_repeat 3 58 0 235 280 0 0 chr1 246525396 246525446 -35668218 + L2 LINE L2 3202 3251 -21 354 313 0 35 chr1 246525707 246525822 -35667842 - MIR SINE MIR -63 145 35 311 231 128 90 chr1 246525923 246525998 -35667666 + Charlie8 DNA MER1_type 1 72 -2345 3638 153 45 31 chr1 246525998 246526705 -35666959 - L1MB2 LINE L1 -2 6169 5453 311 231 128 90 chr1 246526705 246526785 -35666879 + Charlie8 DNA MER1_type 72 162 -2255 223 199 176 42 chr1 246527003 246527098 -35666566 + MIR SINE MIR 30 145 -95 213 239 15 0 chr1 246527888 246527955 -35665709 + (TA)n Simple_repeat Simple_repeat 2 69 0 273 247 111 0 chr1 246528450 246528531 -35665133 + MLT1K LTR MaLR 435 524 -64 349 269 0 10 chr1 246529311 246529415 -35664249 - MER103 DNA DNA -54 112 10 195 129 0 0 chr1 246530026 246530057 -35663607 + (CA)n Simple_repeat Simple_repeat 2 32 0 756 218 0 0 chr1 246530157 246530261 -35663403 + (CA)n Simple_repeat Simple_repeat 1 178 0 312 230 54 0 chr1 246530261 246530335 -35663329 - L1MCa LINE L1 -4353 2073 1996 632 171 16 0 chr1 246530337 246530466 -35663198 + (CATA)n Simple_repeat Simple_repeat 1 131 0 339 201 0 153 chr1 246530466 246530610 -35663054 - L1MCa LINE L1 -4359 2067 1946 320 194 16 0 chr1 246530787 246530849 -35662815 - MLT1K LTR MaLR -2 586 524 292 127 18 18 chr1 246531167 246531222 -35662442 - MLT1K LTR MaLR -346 242 188 423 0 0 0 chr1 246531260 246531307 -35662357 + (TG)n Simple_repeat Simple_repeat 2 48 0 338 266 133 0 chr1 246531378 246531581 -35662083 - L1ME4a LINE L1 -168 5953 5724 512 234 81 39 chr1 246533418 246533598 -35660066 + MIR SINE MIR 75 259 -3 23 0 0 0 chr1 246533790 246533813 -35659851 + AT_rich Low_complexity Low_complexity 1 23 0 364 300 40 0 chr1 246534235 246534335 -35659329 + MIR SINE MIR 73 176 -86 2888 145 29 0 chr1 246534363 246534817 -35658847 + MLT1C LTR MaLR 1 467 0 5410 101 8 4 chr1 246534926 246535679 -35657985 + L1PA12 LINE L1 5413 6168 0 745 188 19 68 chr1 246535680 246535887 -35657777 + L1MA9 LINE L1 6115 6311 -1 1283 188 35 113 chr1 246538722 246539121 -35654543 + MLT1B LTR MaLR 1 368 -22 21 26 0 26 chr1 246539151 246539170 -35654494 + AT_rich Low_complexity Low_complexity 1 19 -19 2409 86 0 0 chr1 246539170 246539460 -35654204 + AluY SINE Alu 1 290 -21 21 26 0 26 chr1 246539460 246539479 -35654185 + AT_rich Low_complexity Low_complexity 19 38 0 679 292 15 10 chr1 246539948 246540150 -35653514 - MIR SINE MIR -58 204 2 1092 184 5 0 chr1 246540457 246540642 -35653022 - MIR SINE MIR -75 187 2 633 236 68 35 chr1 246541043 246541144 -35652520 + MIR SINE MIR 21 117 -145 2396 124 63 12 chr1 246541144 246541555 -35652109 + MSTB1 LTR MaLR 1 432 0 633 236 68 35 chr1 246541555 246541661 -35652003 + MIR SINE MIR 117 234 -28 311 271 19 47 chr1 246542192 246542299 -35651365 - L2 LINE L2 -31 3241 3138 256 321 12 12 chr1 246542912 246542996 -35650668 - MIR3 SINE MIR -12 196 113 501 264 165 25 chr1 246546727 246546961 -35646703 + MIR SINE MIR 1 252 -10 336 265 202 33 chr1 246548821 246549247 -35644417 - L2 LINE L2 -1380 1934 1437 275 208 104 13 chr1 246549424 246549501 -35644163 - MER63 DNA MER1_type 0 1061 978 383 192 0 26 chr1 246549501 246549579 -35644085 - MER63 DNA MER1_type -84 752 677 182 359 46 15 chr1 246550325 246550456 -35643208 + MIR SINE MIR 8 142 -120 575 184 32 24 chr1 246550738 246550863 -35642801 + MER63 DNA MER1_type 1 752 -310 318 320 95 26 chr1 246551292 246551523 -35642141 + MIR SINE MIR 16 262 0 197 337 79 11 chr1 246551541 246551630 -35642034 + L2 LINE L2 3141 3235 -37 213 299 103 26 chr1 246551902 246552019 -35641645 - L2 LINE L2 -2 3270 3145 360 43 0 0 chr1 246552759 246552805 -35640859 + (CA)n Simple_repeat Simple_repeat 2 47 0 2189 99 0 45 chr1 246553204 246553518 -35640146 - AluSx SINE Alu -12 300 1 492 305 92 40 chr1 246554294 246554566 -35639098 - L2 LINE L2 -1 3271 2986 28 0 0 0 chr1 246555283 246555311 -35638353 + AT_rich Low_complexity Low_complexity 1 28 0 597 230 22 15 chr1 246555704 246555839 -35637825 - MIR3 SINE MIR -59 149 14 2432 100 0 0 chr1 246555868 246556178 -35637486 - AluSx SINE Alu -2 310 1 462 317 52 22 chr1 246556350 246556580 -35637084 - MIR SINE MIR -13 249 13 1643 163 63 27 chr1 246556940 246557241 -35636423 - AluJo SINE Alu 0 312 1 268 366 0 0 chr1 246557763 246557845 -35635819 + L2 LINE L2 3155 3236 -36 1946 72 0 53 chr1 246558044 246558308 -35635356 + AluY SINE Alu 41 290 -21 32 0 0 0 chr1 246558313 246558345 -35635319 + AT_rich Low_complexity Low_complexity 1 32 0 264 267 273 0 chr1 246558355 246558505 -35635159 + LTR33 LTR ERVL 4 194 -327 518 231 46 36 chr1 246558552 246558747 -35634917 + LTR33 LTR ERVL 304 500 -21 938 238 65 63 chr1 246559096 246559541 -35634123 - LTR16A1 LTR ERVL 0 457 12 223 250 0 0 chr1 246559633 246559681 -35633983 + CT-rich Low_complexity Low_complexity 1 48 0 186 43 0 0 chr1 246560821 246560844 -35632820 + (CAG)n Simple_repeat Simple_repeat 1 23 0 258 246 209 26 chr1 246561962 246562134 -35631530 - MIR SINE MIR -17 245 46 279 133 0 0 chr1 246562377 246562422 -35631242 + (CA)n Simple_repeat Simple_repeat 2 46 0 572 274 6 24 chr1 246562990 246563158 -35630506 + L2 LINE L2 3145 3309 -4 1378 213 70 0 chr1 246563538 246563825 -35629839 + MLT2C1 LTR ERVL 1 307 -90 348 44 0 0 chr1 246564491 246564536 -35629128 + MADE1 DNA Mariner 36 80 0 185 319 138 21 chr1 246564992 246565086 -35628578 - L2 LINE L2 -32 3240 3136 1683 170 38 7 chr1 246565125 246565414 -35628250 + AluJo SINE Alu 1 298 -14 260 317 207 29 chr1 246565415 246566314 -35627350 - L2 LINE L2 -1624 1690 632 202 100 0 0 chr1 246568303 246568333 -35625331 + L2 LINE L2 3243 3272 0 996 175 30 0 chr1 246568377 246568577 -35625087 - L1MA4 LINE L1 -5 6295 6090 2281 215 50 15 chr1 246568577 246569097 -35624567 - MLT1F LTR MaLR -4 538 1 1525 205 62 49 chr1 246569511 246569964 -35623700 + MLT1C LTR MaLR 6 464 -3 265 275 35 140 chr1 246573363 246573563 -35620101 + MIR SINE MIR 84 262 0 694 237 140 10 chr1 246574627 246574848 -35618816 - MIR SINE MIR -12 250 3 1633 186 118 59 chr1 246575965 246576362 -35617302 - MLT1C LTR MaLR 0 467 40 2049 105 48 10 chr1 246576362 246576657 -35617007 - AluSq SINE Alu -7 306 1 1633 186 118 59 chr1 246576657 246576700 -35616964 - MLT1C LTR MaLR -427 40 1 320 338 84 31 chr1 246576763 246576988 -35616676 + MIR SINE MIR 6 242 -20 3064 119 97 4 chr1 246577259 246577773 -35615891 - L1MB3 LINE L1 -2 6181 5620 204 238 16 0 chr1 246577847 246577910 -35615754 + (TGAA)n Simple_repeat Simple_repeat 1 64 0 234 103 51 0 chr1 246582910 246582949 -35610715 - MIR SINE MIR -141 121 81 803 190 6 3 chr1 246583608 246583912 -35609752 + CT-rich Low_complexity Low_complexity 1 304 0 1804 164 20 10 chr1 246584393 246584692 -35608972 - AluJb SINE Alu -10 302 1 222 268 72 0 chr1 246584910 246585007 -35608657 - L3b LINE CR1 -171 1412 1309 278 302 39 31 chr1 246585319 246585448 -35608216 - MIR3 SINE MIR -34 174 45 2036 248 108 47 chr1 246586542 246586888 -35606776 - L1ME3A LINE L1 -4 6977 6654 333 47 0 0 chr1 246586888 246586931 -35606733 + (TG)n Simple_repeat Simple_repeat 2 44 0 2036 248 108 47 chr1 246586931 246587647 -35606017 - L1ME3A LINE L1 -327 6654 5847 253 240 0 0 chr1 246587647 246587697 -35605967 - MER3 DNA MER1_type 0 209 160 1708 194 41 70 chr1 246587707 246588191 -35605473 - L1ME1 LINE L1 -4 6231 5762 2254 207 16 39 chr1 246588191 246588703 -35604961 - MLT1D LTR MaLR 0 505 6 1467 209 94 12 chr1 246588716 246589337 -35604327 - L1ME1 LINE L1 -505 5730 5078 5136 244 55 36 chr1 246589367 246589691 -35603973 - L1ME1 LINE L1 -4584 1812 1496 1856 158 0 0 chr1 246589691 246590000 -35603664 - AluSx SINE Alu 0 309 1 5136 244 55 36 chr1 246590000 246591443 -35602221 - L1ME1 LINE L1 -4900 1496 9 606 270 13 0 chr1 246591461 246591613 -35602051 - MER3 DNA MER1_type -55 154 1 21 0 0 0 chr1 246591619 246591640 -35602024 + AT_rich Low_complexity Low_complexity 1 21 0 2602 275 56 29 chr1 246591722 246593237 -35600427 - L1ME3A LINE L1 -1460 5497 3672 456 291 63 33 chr1 246593208 246593644 -35600020 - L1ME3A LINE L1 -5198 1940 1318 * 2588 59 0 3 chr1 246594033 246594338 -35599326 - AluY SINE Alu -7 304 1 428 248 113 0 chr1 246594765 246594898 -35598766 - LTR16A LTR ERVL -21 429 282 309 159 0 0 chr1 246595065 246595128 -35598536 + GA-rich Low_complexity Low_complexity 1 63 0 204 40 0 0 chr1 246595838 246595863 -35597801 + (A)n Simple_repeat Simple_repeat 1 25 0 206 246 18 18 chr1 246595914 246595971 -35597693 - L2 LINE L2 -221 3051 2995 324 320 20 20 chr1 246596023 246596173 -35597491 - MIR SINE MIR -1 261 112 269 314 59 39 chr1 246596194 246596347 -35597317 - MER5B DNA MER1_type -16 162 7 1779 181 19 0 chr1 246596606 246596926 -35596738 - L1MA7 LINE L1 -306 5985 5660 1194 191 33 36 chr1 246596927 246597230 -35596434 + L1MA7 LINE L1 5980 6281 -10 427 264 31 75 chr1 246597462 246597621 -35596043 + L2 LINE L2 3161 3312 -1 546 281 7 27 chr1 246597671 246597817 -35595847 + MIR SINE MIR 1 143 -119 285 326 23 0 chr1 246598452 246598538 -35595126 - MER91B DNA MER1_type -10 180 93 502 179 94 26 chr1 246598558 246598675 -35594989 - MER91B DNA MER1_type -60 130 6 1685 149 64 11 chr1 246598878 246599159 -35594505 + AluJo SINE Alu 1 296 -16 2031 141 71 43 chr1 246599175 246599601 -35594063 - MLT1C LTR MaLR -3 452 1 1336 105 73 0 chr1 246599826 246600017 -35593647 + AluSp SINE Alu 107 311 -2 2795 169 70 16 chr1 246600077 246600633 -35593031 - L1MB7 LINE L1 0 6184 5599 186 326 47 12 chr1 246601216 246601302 -35592362 - MIR3 SINE MIR -117 91 3 1697 168 68 6 chr1 246601609 246601931 -35591733 - MLT2C1 LTR ERVL -55 342 1 191 197 303 0 chr1 246601936 246602012 -35591652 + MIR SINE MIR 164 262 0 843 180 224 51 chr1 246602286 246602318 -35591346 - MER33 DNA MER1_type -2261 324 299 1724 148 13 58 chr1 246602318 246602628 -35591036 - AluJo SINE Alu -16 296 1 843 180 224 51 chr1 246602628 246602885 -35590779 - MER33 DNA MER1_type -2286 299 1 607 233 74 63 chr1 246603001 246603194 -35590470 + MER5C DNA MER1_type 49 247 -77 1751 138 43 26 chr1 246603194 246603499 -35590165 + AluJo SINE Alu 2 311 -1 607 233 74 63 chr1 246603499 246603575 -35590089 + MER5C DNA MER1_type 247 321 -3 262 274 12 12 chr1 246603592 246603676 -35589988 + MER5A DNA MER1_type 98 181 -8 183 80 0 0 chr1 246604013 246604038 -35589626 + (A)n Simple_repeat Simple_repeat 1 25 0 2027 146 67 29 chr1 246604530 246604906 -35588758 - MLT1B LTR MaLR 0 390 1 585 247 29 41 chr1 246605283 246605453 -35588211 + MIR SINE MIR 95 262 0 191 250 19 19 chr1 246605902 246605954 -35587710 + L2 LINE L2 3210 3261 -11 2182 89 7 0 chr1 246605954 246606236 -35587428 + AluSx SINE Alu 17 300 -12 193 219 122 37 chr1 246606860 246606942 -35586722 + MIR3 SINE MIR 92 180 -28 726 327 45 65 chr1 246608445 246608891 -35584773 - L2 LINE L2 0 3272 2836 215 340 30 10 chr1 246608962 246609062 -35584602 - MIR SINE MIR -60 148 47 1149 115 23 73 chr1 246609064 246609282 -35584382 + Tigger2 DNA MER2_type 2 208 -2510 806 141 45 58 chr1 246609279 246609435 -35584229 + Tigger2 DNA MER2_type 2564 2717 -1 * 23 0 0 0 chr1 246609779 246609802 -35583862 + AT_rich Low_complexity Low_complexity 1 23 0 528 346 100 19 chr1 246610476 246610994 -35582670 - L2 LINE L2 -686 2628 2069 26 50 0 0 chr1 246611525 246611565 -35582099 + AT_rich Low_complexity Low_complexity 1 40 0 202 246 70 18 chr1 246612372 246612429 -35581235 + L3 LINE CR1 1512 1571 -6 4169 117 5 2 chr1 246613247 246613820 -35579844 - L1PA16 LINE L1 -11 6155 5581 17091 94 15 6 chr1 246613820 246616246 -35577418 - L1PA7 LINE L1 -1960 4186 1738 8749 80 27 2 chr1 246616246 246618153 -35575511 + L1PA7 LINE L1 4204 6151 -3 231 160 11 234 chr1 246618505 246618599 -35575065 + MIR SINE MIR 19 91 -171 837 147 8 0 chr1 246618639 246618768 -35574896 - L1MD1 LINE L1 0 6242 6113 240 306 27 34 chr1 246618916 246619063 -35574601 - L1ME LINE L1 -5653 417 272 264 235 15 15 chr1 246619065 246619133 -35574531 - L2 LINE L2 -463 2851 2784 638 267 101 21 chr1 246619204 246619541 -35574123 - L1 LINE L1 -2238 3908 3545 348 260 197 16 chr1 246619588 246620034 -35573630 - L1 LINE L1 -2724 3422 2896 1225 292 30 36 chr1 246620104 246620542 -35573122 + LTR16A LTR ERVL 16 450 0 397 301 124 0 chr1 246620621 246620774 -35572890 - L1ME LINE L1 -524 5646 5475 395 322 46 23 chr1 246620933 246621107 -35572557 + MIR3 SINE MIR 23 200 -8 212 273 102 45 chr1 246621547 246621635 -35572029 - L2 LINE L2 -48 3224 3132 644 316 158 9 chr1 246624021 246624451 -35569213 + L2 LINE L2 2805 3298 -15 419 142 5 209 chr1 246624635 246624714 -35568950 - L1MC5 LINE L1 -141 7820 7809 335 253 72 48 chr1 246624714 246624880 -35568784 - MER96 DNA MER1_type -1 174 5 419 142 5 209 chr1 246624880 246625011 -35568653 - L1MC5 LINE L1 -152 7809 7653 1258 146 60 34 chr1 246625015 246625248 -35568416 + AluJo SINE Alu 37 275 -37 2061 209 94 103 chr1 246625299 246625856 -35567808 - L1MC5 LINE L1 -294 7667 7120 1743 185 0 16 chr1 246625856 246626169 -35567495 - AluJo SINE Alu -4 308 1 2061 209 94 103 chr1 246626169 246626595 -35567069 - L1MC5 LINE L1 -841 7120 6692 237 243 7 136 chr1 246628119 246628259 -35565405 - MARNA DNA Mariner -13 573 452 196 238 0 0 chr1 246630693 246630735 -35562929 + MIR SINE MIR 104 145 -63 573 321 96 29 chr1 246632386 246632834 -35560830 - L1 LINE L1 -3328 2818 2341 5141 165 55 9 chr1 246632974 246634040 -35559624 - L1MC1 LINE L1 -17 6316 5206 29 28 0 0 chr1 246634175 246634211 -35559453 + AT_rich Low_complexity Low_complexity 1 36 0 443 321 74 15 chr1 246634347 246634845 -35558819 - L1MC5 LINE L1 -528 5641 5255 645 244 61 70 chr1 246635172 246635761 -35557903 - L1MC5 LINE L1 -1310 4836 4253 226 279 13 0 chr1 246635838 246635917 -35557747 + L1M4 LINE L1 3969 4048 -2098 409 284 82 38 chr1 246636011 246636462 -35557202 - L1MC5 LINE L1 -2129 4017 3547 314 302 90 68 chr1 246636685 246636996 -35556668 - L1MC5 LINE L1 -3656 2490 2173 21 0 0 0 chr1 246637022 246637043 -35556621 + AT_rich Low_complexity Low_complexity 1 21 0 2424 147 20 0 chr1 246637057 246637459 -35556205 + MSTA LTR MaLR 19 428 0 2189 85 0 0 chr1 246637785 246638057 -35555607 - AluSc SINE Alu -3 306 35 1732 100 23 4 chr1 246638341 246638600 -35555064 - THE1C LTR MaLR -111 264 1 785 221 163 8 chr1 246638607 246638865 -35554799 - L1ME LINE L1 -359 5807 5510 226 194 129 0 chr1 246638854 246638916 -35554748 - L1ME LINE L1 -2697 3449 3380 * 1243 221 125 48 chr1 246639436 246639892 -35553772 - MLT1F1 LTR MaLR -8 559 69 1357 228 14 39 chr1 246639960 246640104 -35553560 - LTR16C LTR ERVL 0 491 345 1886 176 0 10 chr1 246640104 246640410 -35553254 - AluJo SINE Alu -9 303 1 1357 228 14 39 chr1 246640410 246640620 -35553044 - LTR16C LTR ERVL -146 345 146 224 372 29 36 chr1 246640718 246640855 -35552809 + L2 LINE L2 3134 3269 -3 234 281 20 133 chr1 246640881 246641077 -35552587 - L2 LINE L2 -107 3165 2992 26 0 0 0 chr1 246641647 246641673 -35551991 + AT_rich Low_complexity Low_complexity 1 26 0 244 260 110 10 chr1 246641964 246642064 -35551600 - L2 LINE L2 -2 3270 3161 541 284 15 107 chr1 246642227 246642365 -35551299 + L2 LINE L2 2489 2581 -733 1796 168 25 0 chr1 246642365 246642650 -35551014 + AluJb SINE Alu 1 292 -20 541 284 15 107 chr1 246642650 246642838 -35550826 + L2 LINE L2 2581 2785 -529 597 255 117 17 chr1 246642863 246643094 -35550570 + MIR SINE MIR 9 262 0 510 367 93 26 chr1 246644725 246645153 -35548511 - L2 LINE L2 -5 3267 2811 1742 186 0 0 chr1 246646510 246646785 -35546879 + AluSx SINE Alu 1 275 -37 234 0 0 0 chr1 246646789 246646815 -35546849 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1870 180 16 100 chr1 246646909 246647359 -35546305 + LTR32 LTR ERVL 16 427 -44 576 170 245 0 chr1 246649165 246649312 -35544352 + MER5A DNA MER1_type 2 184 -5 289 288 78 53 chr1 246649860 246650385 -35543279 + HAL1b LINE L1 69 606 -742 716 192 115 98 chr1 246650466 246650567 -35543097 - MIR SINE MIR -22 240 142 2397 87 3 0 chr1 246650567 246650865 -35542799 - AluSx SINE Alu -13 299 1 716 192 115 98 chr1 246650865 246650997 -35542667 - MIR SINE MIR -120 142 3 359 276 175 27 chr1 246651320 246651705 -35541959 + L1MDa LINE L1 2347 2808 -3904 2206 139 0 0 chr1 246651720 246652023 -35541641 + AluSx SINE Alu 1 303 -9 640 211 119 41 chr1 246652031 246652225 -35541439 - MER63A DNA MER1_type 0 210 2 501 309 95 40 chr1 246652683 246653211 -35540453 + L1MDa LINE L1 3242 3798 -2742 2245 92 0 0 chr1 246653687 246653998 -35539666 - AluY SINE Alu 0 311 1 2392 104 0 0 chr1 246654017 246654324 -35539340 - AluSx SINE Alu -5 307 1 371 189 14 14 chr1 246654520 246654594 -35539070 - Tigger3b DNA MER2_type -9 1222 1149 1900 125 6 47 chr1 246654597 246654940 -35538724 - MER1B DNA MER1_type -3 336 8 5571 125 93 12 chr1 246654942 246656006 -35537658 - Tigger3b DNA MER2_type -81 1150 1 311 177 240 0 chr1 246656147 246656243 -35537421 + L1 LINE L1 4362 4480 -1666 1432 136 27 0 chr1 246656785 246657006 -35536658 + AluSg/x SINE Alu 85 311 -1 313 268 68 94 chr1 246657223 246657458 -35536206 - MLT1J LTR MaLR -173 338 110 284 209 90 30 chr1 246657774 246657908 -35535756 + L1ME4a LINE L1 5734 5875 -246 294 231 28 19 chr1 246658010 246658118 -35535546 + L1ME4a LINE L1 6002 6110 -11 22 0 0 0 chr1 246658124 246658146 -35535518 + AT_rich Low_complexity Low_complexity 1 22 0 480 306 95 21 chr1 246658968 246659357 -35534307 + L1ME4a LINE L1 5458 5875 -246 945 247 114 32 chr1 246659708 246660077 -35533587 - HAL1 LINE L1 -700 1807 1409 1023 207 48 10 chr1 246660636 246660844 -35532820 + MIR SINE MIR 31 246 -16 182 209 0 47 chr1 246660810 246660853 -35532811 + L2 LINE L2 3258 3298 -15 * 338 261 9 35 chr1 246660899 246661014 -35532650 - MIR SINE MIR -150 112 1 182 326 32 11 chr1 246662606 246662701 -35530963 - L2 LINE L2 -665 2649 2553 222 37 0 0 chr1 246663775 246663802 -35529862 + (TG)n Simple_repeat Simple_repeat 2 28 0 576 188 55 8 chr1 246664321 246664449 -35529215 + MER94 DNA DNA 1 134 0 669 299 204 7 chr1 246666771 246667263 -35526401 + L2 LINE L2 2722 3313 0 1836 171 118 36 chr1 246668195 246668662 -35525002 + MLT1D LTR MaLR 1 505 0 24979 35 1 0 chr1 246669478 246673298 -35520366 - L1PA4 LINE L1 -5 6150 2326 1142 221 156 23 chr1 246673440 246673871 -35519793 + MLT1D LTR MaLR 14 386 -4 221 250 59 15 chr1 246675164 246675232 -35518432 - MIR SINE MIR -113 149 79 2311 104 30 35 chr1 246675383 246675749 -35517915 - THE1B LTR MaLR 0 364 1 271 288 27 0 chr1 246675798 246675871 -35517793 + CT-rich Low_complexity Low_complexity 3 77 0 232 262 84 19 chr1 246676297 246676404 -35517260 - L1MC/D LINE L1 -1897 5911 5798 14704 129 34 5 chr1 246676404 246678753 -35514911 - Tigger1 DNA MER2_type 0 2418 2 324 274 69 0 chr1 246678753 246678855 -35514809 + MIR SINE MIR 152 260 -2 390 295 140 21 chr1 246679816 246680009 -35513655 + MIR SINE MIR 14 229 -33 577 237 50 7 chr1 246680151 246680290 -35513374 + MIR SINE MIR 66 210 -52 3462 260 145 26 chr1 246680339 246681808 -35511856 - L2 LINE L2 -615 2699 1057 434 256 113 0 chr1 246681867 246682000 -35511664 + MIR SINE MIR 36 183 -79 2435 143 49 33 chr1 246682952 246683354 -35510310 - Tigger2a DNA MER2_type -2274 434 23 2825 78 13 5 chr1 246683354 246683726 -35509938 - THE1C LTR MaLR 0 375 1 2435 143 49 33 chr1 246683726 246683750 -35509914 - Tigger2a DNA MER2_type -2685 23 1 192 281 31 21 chr1 246683878 246683974 -35509690 + MIR3 SINE MIR 104 200 -8 213 39 0 0 chr1 246684201 246684227 -35509437 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 264 340 47 43 chr1 246684249 246684484 -35509180 - L2 LINE L2 -34 3279 3044 289 303 101 9 chr1 246684862 246684971 -35508693 - MIR SINE MIR -113 149 31 257 269 125 19 chr1 246684974 246685078 -35508586 + L2 LINE L2 3154 3268 -4 864 78 13 13 chr1 246685260 246685419 -35508245 - L1PA4 LINE L1 0 6133 6006 516 267 43 33 chr1 246686620 246686821 -35506843 - MIR SINE MIR -21 241 38 787 249 28 6 chr1 246689298 246689479 -35504185 + MER117 DNA MER1_type 4 188 -9 538 254 127 0 chr1 246689561 246689758 -35503906 - MIR SINE MIR -1 261 40 182 310 70 14 chr1 246689805 246689876 -35503788 - MIR3 SINE MIR -120 88 14 193 298 125 29 chr1 246689952 246690056 -35503608 - L2 LINE L2 -19 3294 3181 509 228 126 62 chr1 246690856 246691270 -35502394 - MLT1L LTR MaLR -114 501 9 228 302 85 47 chr1 246691539 246691668 -35501996 - L2 LINE L2 -20 3293 3160 311 307 53 9 chr1 246691694 246691808 -35501856 + L2 LINE L2 3194 3312 -1 912 130 19 13 chr1 246692009 246692163 -35501501 - LTR32 LTR ERVL 0 471 317 1655 204 30 21 chr1 246692264 246692603 -35501061 - LTR32 LTR ERVL -122 349 8 302 282 141 34 chr1 246692623 246692772 -35500892 + MIR SINE MIR 28 192 -70 267 237 76 51 chr1 246694149 246694267 -35499397 - MIR SINE MIR -62 200 80 2160 144 9 3 chr1 246695022 246695355 -35498309 - Tigger1 DNA MER2_type 0 2418 2084 811 204 50 77 chr1 246695355 246695575 -35498089 - AluJo SINE Alu -12 300 87 189 0 0 0 chr1 246695586 246695607 -35498057 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1662 175 0 25 chr1 246695609 246695894 -35497770 - AluJb SINE Alu -34 278 1 3237 132 4 4 chr1 246695895 246696402 -35497262 - Tigger1 DNA MER2_type -332 2086 1580 2139 127 5 67 chr1 246696408 246696795 -35496869 - Tigger1 DNA MER2_type -2055 363 1 349 326 43 0 chr1 246697409 246697547 -35496117 - MER117 DNA MER1_type -48 149 6 214 340 11 11 chr1 246698838 246698932 -35494732 - L3b LINE CR1 -85 1498 1405 296 211 11 53 chr1 246699280 246699375 -35494289 + GA-rich Low_complexity Low_complexity 5 95 0 1785 169 109 49 chr1 246700179 246700327 -35493337 - MLT1C LTR MaLR -6 461 323 2078 118 0 16 chr1 246700327 246700678 -35492986 + AluSq SINE Alu 1 313 0 1785 169 109 49 chr1 246700678 246700961 -35492703 - MLT1C LTR MaLR -144 323 4 430 286 25 0 chr1 246701404 246701523 -35492141 - L2 LINE L2 0 3313 3192 1091 179 10 0 chr1 246701906 246702107 -35491557 - L1MC2 LINE L1 -5 6339 6137 1272 182 146 0 chr1 246702169 246702449 -35491215 - L1MC3 LINE L1 -208 7577 7257 529 294 19 42 chr1 246702600 246702768 -35490896 + L1ME LINE L1 5482 5638 -526 2111 186 66 7 chr1 246702768 246703176 -35490488 + MSTB1 LTR MaLR 1 432 0 529 294 19 42 chr1 246703176 246703291 -35490373 + L1ME LINE L1 5638 5754 -410 263 169 135 11 chr1 246703297 246703386 -35490278 + HSMAR1 DNA Mariner 1 100 -1187 236 282 51 0 chr1 246703393 246703471 -35490193 + L1ME LINE L1 5803 5884 -286 2344 104 0 0 chr1 246703624 246703931 -35489733 + AluSc SINE Alu 1 307 -2 387 169 0 0 chr1 246704810 246704881 -35488783 + T-rich Low_complexity Low_complexity 1 71 0 275 233 82 14 chr1 246704969 246705042 -35488622 + MIR SINE MIR 83 160 -102 435 298 37 68 chr1 246706254 246706606 -35487058 - MLT1I LTR MaLR -1 408 68 6083 139 42 18 chr1 246706792 246707890 -35485774 - L1MC1 LINE L1 -15 6318 5198 5622 135 19 9 chr1 246708243 246709799 -35483865 - L1PA15 LINE L1 0 6165 4622 579 158 105 30 chr1 246710691 246710824 -35482840 - FRAM SINE Alu 0 40 1 202 277 114 60 chr1 246711707 246711873 -35481791 + L3 LINE CR1 1263 1437 -140 1253 294 101 29 chr1 246712325 246712948 -35480716 + MER115 DNA AcHobo 1 668 -25 192 179 0 0 chr1 246713287 246713326 -35480338 + (CA)n Simple_repeat Simple_repeat 2 40 0 2395 157 10 8 chr1 246713867 246714269 -35479395 + MER57A LTR ERV1 1 403 0 448 248 29 7 chr1 246714368 246714505 -35479159 - MIR3 SINE MIR -32 176 37 1145 117 21 54 chr1 246714942 246715181 -35478483 - Charlie5 DNA MER1_type -27 2585 2355 1399 214 9 58 chr1 246715210 246715350 -35478314 - LTR40c LTR ERVL -33 432 287 2264 203 52 68 chr1 246715350 246715981 -35477683 + MLT1E3 LTR MaLR 1 621 -3 1399 214 9 58 chr1 246715981 246716167 -35477497 - LTR40c LTR ERVL -178 287 122 1060 174 16 61 chr1 246716407 246716654 -35477010 - MER106A DNA MER1_type 0 236 1 285 355 36 0 chr1 246717439 246717577 -35476087 - L1MDb LINE L1 -3323 3083 2941 416 318 0 5 chr1 246717618 246717813 -35475851 - AluYa5 SINE Alu 0 311 118 2195 65 72 0 chr1 246719118 246719408 -35474256 - AluY SINE Alu 0 311 1 1436 229 7 0 chr1 246719424 246719704 -35473960 - AluJo SINE Alu -30 282 1 756 284 91 20 chr1 246719711 246720218 -35473446 - L1MDb LINE L1 -3489 2917 2375 210 296 26 20 chr1 246720591 246720743 -35472921 + (TTTA)n Simple_repeat Simple_repeat 3 155 0 * 211 229 0 0 chr1 246720697 246720745 -35472919 + T-rich Low_complexity Low_complexity 1 48 0 534 294 64 76 chr1 246721171 246721593 -35472071 - HAL1b LINE L1 -703 645 229 2675 20 26 0 chr1 246721617 246721920 -35471744 + AluYa5 SINE Alu 1 311 0 2201 120 7 0 chr1 246772021 246772329 -35421335 + AluSx SINE Alu 1 310 -2 3638 148 36 2 chr1 246772336 246772950 -35420714 + L1P LINE L1 3597 4231 -1915 5039 191 34 2 chr1 246774647 246775611 -35418053 - THE1C-int LTR MaLR -656 995 1 1607 174 58 25 chr1 246775611 246775974 -35417690 - THE1C LTR MaLR 0 375 1 314 209 81 150 chr1 246776010 246776283 -35417381 - L1MDb LINE L1 -5380 1029 776 359 327 130 28 chr1 246776465 246776820 -35416844 + L1MC4a LINE L1 5442 5832 -1976 2828 90 0 0 chr1 246776858 246777225 -35416439 + L1P LINE L1 4 370 -5776 2567 60 9 0 chr1 246777222 246777557 -35416107 + L1P LINE L1 734 1071 -5075 * 4231 214 54 55 chr1 246777657 246777824 -35415840 - L1MC/D LINE L1 -743 5337 5171 1589 192 19 10 chr1 246777824 246778131 -35415533 - AluJo SINE Alu -2 310 1 4231 214 54 55 chr1 246778131 246779586 -35414078 - L1MC/D LINE L1 -909 5171 3914 2017 231 114 19 chr1 246779688 246780521 -35413143 - L1MC/D LINE L1 -2907 3173 2262 435 278 78 48 chr1 246780521 246780941 -35412723 - L1ME LINE L1 -5269 814 389 207 0 0 0 chr1 246781205 246781228 -35412436 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1563 225 8 3 chr1 246781808 246782164 -35411500 - L1MD2 LINE L1 -368 5991 5634 683 102 0 0 chr1 246782173 246782261 -35411403 + L1P2 LINE L1 11 98 -6048 * 9953 100 1 22 chr1 246782259 246783767 -35409897 + L1P2 LINE L1 847 2321 -3825 20492 54 6 17 chr1 246783869 246786958 -35406706 + L1P2 LINE L1 2734 5783 -371 182 91 30 0 chr1 246787549 246787582 -35406082 + GA-rich Low_complexity Low_complexity 1 34 0 1874 159 14 7 chr1 246787607 246787903 -35405761 + AluJo SINE Alu 1 298 -14 334 310 9 0 chr1 246788158 246788271 -35405393 - MER81 DNA DNA 0 114 1 180 259 35 17 chr1 246788443 246788501 -35405163 - L2 LINE L2 -3 3269 3211 527 273 120 13 chr1 246788897 246789197 -35404467 - L1ME4a LINE L1 -99 6022 5691 418 195 43 97 chr1 246790339 246790524 -35403140 - MIR SINE MIR -76 186 12 1307 247 65 36 chr1 246790589 246791117 -35402547 + MLT1K LTR MaLR 12 588 0 2093 135 3 0 chr1 246791477 246791774 -35401890 + AluSx SINE Alu 1 298 -14 222 218 0 77 chr1 246791864 246791942 -35401722 + MIR SINE MIR 186 257 -5 28 0 0 0 chr1 246791947 246791975 -35401689 + AT_rich Low_complexity Low_complexity 1 28 0 265 325 108 24 chr1 246792686 246792788 -35400876 - MIR SINE MIR -13 249 157 4004 148 22 0 chr1 246792788 246793409 -35400255 - MER41B LTR ERV1 0 635 1 265 325 108 24 chr1 246793409 246793518 -35400146 - MIR SINE MIR -105 157 20 304 100 0 0 chr1 246795540 246795580 -35398084 + MER41A LTR ERV1 325 364 -190 275 362 43 0 chr1 246795807 246795948 -35397716 - MER5A DNA MER1_type 0 189 43 600 318 8 17 chr1 246796745 246796984 -35396680 + MIR SINE MIR 18 254 -8 1219 289 100 46 chr1 246797798 246799384 -35394280 - L1ME4a LINE L1 -818 5328 3658 3270 162 18 9 chr1 246799481 246800222 -35393442 - L1MC1 LINE L1 0 6333 5406 228 215 31 31 chr1 246800691 246800756 -35392908 + MIR SINE MIR 143 207 -55 219 139 0 0 chr1 246802145 246802181 -35391483 + (TA)n Simple_repeat Simple_repeat 1 36 0 1953 137 0 42 chr1 246802181 246802494 -35391170 - AluSx SINE Alu -12 300 1 443 296 62 17 chr1 246802743 246802919 -35390745 + MIR3 SINE MIR 16 199 -9 1889 223 48 12 chr1 246802964 246803376 -35390288 - MER119 DNA MER1_type 0 583 157 185 266 13 51 chr1 246803752 246803831 -35389833 - L2 LINE L2 -217 3055 2980 1283 149 5 5 chr1 246803965 246804166 -35389498 - MLT1A1 LTR MaLR -164 201 1 868 141 7 7 chr1 246804200 246804342 -35389322 - AluSg/x SINE Alu -2 310 169 822 103 0 8 chr1 246804645 246804658 -35389006 - L1PA4 LINE L1 -22 6133 6121 18638 45 9 1 chr1 246804658 246807739 -35385925 - L1PA4 LINE L1 -2 6153 3055 822 103 0 8 chr1 246807739 246807842 -35385822 - L1PA4 LINE L1 -34 6121 6018 * 14698 45 3 3 chr1 246807822 246809637 -35384027 - L1PA4 LINE L1 -3012 3134 1320 427 250 9 0 chr1 246810065 246810173 -35383491 + MER103 DNA DNA 3 111 -55 1099 151 16 5 chr1 246810569 246810755 -35382909 + MER5A DNA MER1_type 1 188 -1 303 333 0 0 chr1 246812636 246812741 -35380923 - MIR SINE MIR -73 135 31 181 56 28 28 chr1 246813350 246813386 -35380278 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 626 222 0 8 chr1 246813393 246813510 -35380154 - FLAM_C SINE Alu -27 116 1 348 273 83 30 chr1 246813562 246813694 -35379970 + MER112 DNA MER1_type 116 254 -6 767 194 8 0 chr1 246815031 246815160 -35378504 + FLAM_A SINE Alu 1 130 -3 333 254 88 9 chr1 246815386 246815500 -35378164 + MIR SINE MIR 22 144 -118 437 274 64 68 chr1 246816966 246817247 -35376417 - MLT1L LTR MaLR -221 394 115 397 260 149 17 chr1 246817414 246817570 -35376094 + MER5A DNA MER1_type 4 183 -6 504 279 67 39 chr1 246817877 246817896 -35375768 - MIR SINE MIR -47 215 198 1798 212 99 38 chr1 246817896 246818419 -35375245 - MLT1H1 LTR MaLR 0 555 1 504 279 67 39 chr1 246818419 246818607 -35375057 - MIR SINE MIR -64 198 2 834 216 41 0 chr1 246819437 246819608 -35374056 - MER45A DNA AcHobo 0 178 1 8621 132 11 1 chr1 246822103 246823380 -35370284 - Tigger1 DNA MER2_type -1126 1292 3 224 346 0 47 chr1 246823432 246823539 -35370125 - MIR SINE MIR -89 119 23 184 239 0 0 chr1 246824513 246824559 -35369105 + MIR SINE MIR 55 100 -108 261 88 0 0 chr1 246824805 246824839 -35368825 - L1MA6 LINE L1 -520 5771 5738 2660 163 19 27 chr1 246824841 246825232 -35368432 + L1MA6 LINE L1 5777 6166 -134 1794 115 0 0 chr1 246825232 246825501 -35368163 + AluSx SINE Alu 48 316 0 2660 163 19 27 chr1 246825501 246825634 -35368030 + L1MA6 LINE L1 6166 6299 -1 703 343 118 10 chr1 246825918 246826606 -35367058 + L2 LINE L2 1701 2462 -852 5506 128 17 96 chr1 246827507 246827710 -35365954 - L1PA16 LINE L1 0 6166 5949 2108 144 0 0 chr1 246827710 246828002 -35365662 - AluSx SINE Alu -20 292 1 5506 128 17 96 chr1 246828002 246829198 -35364466 - L1PA16 LINE L1 -217 5949 4910 2098 128 0 0 chr1 246829278 246829566 -35364098 + AluSx SINE Alu 1 288 -24 193 361 71 49 chr1 246829567 246829833 -35363831 + L2 LINE L2 2695 2966 -348 228 306 16 0 chr1 246830024 246830086 -35363578 + L2 LINE L2 3195 3257 -15 199 300 156 44 chr1 246830947 246831127 -35362537 - MIR3 SINE MIR -2 206 7 * 257 305 146 7 chr1 246831122 246831273 -35362391 + MER5B DNA MER1_type 7 178 0 2286 105 0 0 chr1 246831409 246831703 -35361961 + AluSg SINE Alu 1 294 -16 258 343 23 40 chr1 246832240 246832415 -35361249 + MER5A DNA MER1_type 7 189 0 219 232 18 0 chr1 246832605 246832661 -35361003 + MIR SINE MIR 194 250 -12 242 247 78 0 chr1 246832878 246832955 -35360709 + MIR SINE MIR 71 153 -109 383 293 107 15 chr1 246833028 246833231 -35360433 - MIR SINE MIR -6 256 38 215 275 50 25 chr1 246835029 246835109 -35358555 + L2 LINE L2 3182 3263 -50 448 231 63 84 chr1 246835284 246835486 -35358178 - MIR SINE MIR -53 209 10 196 281 0 0 chr1 246836754 246836811 -35356853 - MIR SINE MIR -32 230 174 451 329 27 0 chr1 246836897 246837043 -35356621 - MIR SINE MIR -82 180 31 221 164 73 18 chr1 246837259 246837314 -35356350 + L2 LINE L2 3006 3063 -250 207 114 0 0 chr1 246837510 246837545 -35356119 + (TAA)n Simple_repeat Simple_repeat 1 35 0 933 254 17 25 chr1 246837546 246837786 -35355878 - MIR SINE MIR -8 254 17 980 255 116 53 chr1 246837806 246838282 -35355382 + MLT1H LTR MaLR 14 543 -6 419 184 35 23 chr1 246838291 246838378 -35355286 + L2 LINE L2 3185 3272 0 1817 164 3 7 chr1 246838515 246838808 -35354856 + AluJb SINE Alu 3 294 -18 321 263 147 11 chr1 246838989 246839084 -35354580 + L2 LINE L2 3133 3240 -32 297 286 188 0 chr1 246839188 246839321 -35354343 - MIR3 SINE MIR -8 200 43 2011 162 0 0 chr1 246840376 246840679 -35352985 - AluSx SINE Alu -9 303 1 487 264 54 0 chr1 246841360 246841508 -35352156 - MIR SINE MIR -8 254 99 244 267 37 106 chr1 246841839 246842000 -35351664 - MIR3 SINE MIR -29 179 30 40 21 0 0 chr1 246842762 246842809 -35350855 + AT_rich Low_complexity Low_complexity 1 47 0 300 353 15 23 chr1 246843151 246843284 -35350380 - L2 LINE L2 -5 3267 3136 2207 129 0 0 chr1 246844291 246844601 -35349063 - AluSx SINE Alu -2 310 1 276 357 50 7 chr1 246846288 246846428 -35347236 - L3b LINE CR1 -95 1488 1343 1894 132 19 51 chr1 246847603 246847914 -35345750 - AluSx SINE Alu -11 301 1 249 179 152 125 chr1 246848405 246848517 -35345147 + MIR SINE MIR 109 223 -39 2603 232 114 47 chr1 246848870 246849759 -35343905 - MER45C DNA AcHobo 0 953 6 180 267 67 40 chr1 246850352 246850427 -35343237 - MIR3 SINE MIR 0 208 132 233 29 0 29 chr1 246850526 246850561 -35343103 + (CAA)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr1 246850575 246850600 -35343064 + AT_rich Low_complexity Low_complexity 1 25 0 308 255 96 114 chr1 246850641 246850974 -35342690 + L1MC4a LINE L1 5268 5594 -527 461 277 66 50 chr1 246851074 246851392 -35342272 + L1MC4a LINE L1 5561 5883 -1925 265 224 84 19 chr1 246851639 246851746 -35341918 - MIR SINE MIR -30 232 119 272 169 34 17 chr1 246851949 246852008 -35341656 - L1ME LINE L1 -480 5641 5582 7515 123 16 34 chr1 246852743 246853924 -35339740 - Tigger1 DNA MER2_type -1 2417 1258 4377 135 24 24 chr1 246854597 246854746 -35338918 - MER50 LTR ERV1 -23 711 563 1934 141 48 0 chr1 246854746 246855037 -35338627 + AluSx SINE Alu 1 305 -7 4377 135 24 24 chr1 246855037 246855598 -35338066 - MER50 LTR ERV1 -170 564 1 305 314 113 43 chr1 246855733 246856105 -35337559 + L2 LINE L2 2824 3221 -51 231 302 220 6 chr1 246857444 246857603 -35336061 - L2 LINE L2 0 3272 3080 580 258 16 0 chr1 246857669 246857797 -35335867 + L2 LINE L2 3182 3311 -2 2532 79 0 6 chr1 246858843 246859158 -35334506 + AluSp SINE Alu 1 313 0 2605 176 63 20 chr1 246859357 246859868 -35333796 - MER21B LTR ERV1 -1 862 330 233 228 22 43 chr1 246860574 246860666 -35332998 - HAL1b LINE L1 -501 847 758 514 206 0 0 chr1 246860719 246860811 -35332853 + Tigger5 DNA MER2_type 2232 2323 0 611 301 76 43 chr1 246860811 246861485 -35332179 - HAL1b LINE L1 -598 750 55 20675 159 44 12 chr1 246861536 246866731 -35326933 - L1MA2 LINE L1 0 7723 2194 2664 16 7 13 chr1 246866731 246867041 -35326623 + AluY SINE Alu 1 308 -3 20675 159 44 12 chr1 246867041 246869200 -35324464 - L1MA2 LINE L1 -5529 2194 105 * 30691 121 15 57 chr1 246869174 246875598 -35318066 - L1PA7 LINE L1 0 7573 1428 474 216 8 40 chr1 246875605 246875730 -35317934 - L1MA2 LINE L1 -7434 131 11 527 349 67 0 chr1 246876699 246876937 -35316727 + MIR SINE MIR 1 254 -8 241 326 43 0 chr1 246877059 246877151 -35316513 - HAL1 LINE L1 -1616 891 796 265 338 83 0 chr1 246878703 246878836 -35314828 - MER103 DNA DNA -3 163 20 218 259 68 93 chr1 246879500 246879662 -35314002 - MIR SINE MIR -64 144 29 356 369 28 56 chr1 246879827 246880217 -35313447 - L2 LINE L2 -78 3194 2816 259 262 117 48 chr1 246880329 246880432 -35313232 + L2 LINE L2 3161 3270 -2 350 226 65 0 chr1 246881048 246881141 -35312523 - MIR SINE MIR -71 191 93 519 242 147 6 chr1 246881479 246881636 -35312028 - MER5A DNA MER1_type -2 187 9 190 286 89 0 chr1 246881981 246882037 -35311627 - L2 LINE L2 -18 3254 3194 338 208 7 132 chr1 246882114 246882258 -35311406 + MER112 DNA MER1_type 1 126 -134 243 160 40 0 chr1 246882408 246882458 -35311206 - LTR33 LTR ERVL -361 160 109 279 136 34 34 chr1 246882592 246882651 -35311013 + MER112 DNA MER1_type 111 169 -91 2281 146 30 30 chr1 246883973 246884337 -35309327 + THE1B LTR MaLR 1 364 0 2237 102 0 3 chr1 246885612 246885906 -35307758 + AluSq SINE Alu 1 293 -20 2068 175 18 3 chr1 246886007 246886389 -35307275 - MLT1B LTR MaLR 0 390 3 558 268 37 49 chr1 246886431 246886674 -35306990 - L2 LINE L2 0 3313 3074 2123 133 27 0 chr1 246886794 246887095 -35306569 - AluSx SINE Alu -3 309 1 677 216 0 16 chr1 246887334 246887459 -35306205 + FLAM_C SINE Alu 2 124 -9 316 262 152 14 chr1 246887518 246887663 -35306001 - MIR SINE MIR -11 251 87 363 253 152 25 chr1 246888444 246888715 -35304949 - L1M4 LINE L1 -747 5399 5092 1402 203 47 14 chr1 246888794 246889090 -35304574 - AluJo SINE Alu -6 306 1 349 236 21 2 chr1 246889743 246889862 -35303802 - MLT1J2 LTR MaLR -217 192 73 293 153 17 0 chr1 246891235 246891294 -35302370 + MIR SINE MIR 103 162 -100 215 340 21 11 chr1 246891546 246891640 -35302024 - MIR SINE MIR -79 129 35 234 0 0 0 chr1 246891653 246891679 -35301985 + (T)n Simple_repeat Simple_repeat 1 26 0 218 32 32 0 chr1 246892430 246892461 -35301203 + (TTTTTA)n Simple_repeat Simple_repeat 2 33 0 6251 96 34 3 chr1 246892486 246894126 -35299538 - L1PA13 LINE L1 -1 6162 4486 476 251 115 45 chr1 246894289 246894347 -35299317 + L1ME4a LINE L1 5589 5641 -480 402 196 0 10 chr1 246894347 246894444 -35299220 + L1MA4 LINE L1 6204 6299 -1 476 251 115 45 chr1 246894444 246894682 -35298982 + L1ME4a LINE L1 5641 5916 -205 297 109 0 0 chr1 246895048 246895094 -35298570 + (TG)n Simple_repeat Simple_repeat 2 47 0 255 295 0 0 chr1 246895206 246895284 -35298380 + L2 LINE L2 3235 3312 -1 221 154 0 26 chr1 246895410 246895449 -35298215 + MIR SINE MIR 36 73 -189 2424 145 17 10 chr1 246895509 246895922 -35297742 - L1MA8 LINE L1 -280 6011 5596 1745 149 14 28 chr1 246895929 246896255 -35297409 - AluJb SINE Alu 0 322 1 21 36 0 0 chr1 246896255 246896283 -35297381 + AT_rich Low_complexity Low_complexity 1 28 0 209 184 0 0 chr1 246897231 246897269 -35296395 + (TG)n Simple_repeat Simple_repeat 1 38 0 1622 74 10 0 chr1 246897621 246897863 -35295801 - AluY SINE Alu 0 320 77 228 368 0 0 chr1 246898368 246898455 -35295209 + GA-rich Low_complexity Low_complexity 1 87 0 2270 238 69 6 chr1 246898851 246899388 -35294276 - MLT1E LTR MaLR -6 587 17 513 215 65 0 chr1 246899450 246899557 -35294107 - MER81 DNA DNA 0 114 1 338 306 96 6 chr1 246901272 246901429 -35292235 + HAL1 LINE L1 925 1095 -1412 935 100 0 0 chr1 246901429 246901549 -35292115 + AluSq/x SINE Alu 1 120 -193 243 0 0 0 chr1 246901554 246901581 -35292083 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1172 273 166 19 chr1 246901681 246901738 -35291926 + HAL1 LINE L1 1200 1247 -1260 2835 128 14 18 chr1 246901738 246902174 -35291490 + Tigger2a DNA MER2_type 1 434 0 1172 273 166 19 chr1 246902174 246902756 -35290908 + HAL1 LINE L1 1247 1933 -574 27 49 0 0 chr1 246903104 246903145 -35290519 + AT_rich Low_complexity Low_complexity 1 41 0 426 196 0 33 chr1 246903307 246903491 -35290173 + (TA)n Simple_repeat Simple_repeat 2 179 0 492 185 12 26 chr1 246903523 246903793 -35289871 + (TA)n Simple_repeat Simple_repeat 1 266 0 1109 111 24 24 chr1 246903818 246904026 -35289638 - L1MA7 LINE L1 -5 6286 6079 21 36 0 0 chr1 246904857 246904885 -35288779 + AT_rich Low_complexity Low_complexity 1 28 0 4141 128 59 6 chr1 246905561 246906223 -35287441 + L1PA16 LINE L1 5468 6164 -2 2613 94 5 46 chr1 246906607 246907002 -35286662 + L1PB2 LINE L1 5768 6146 -5 21 0 0 0 chr1 246907004 246907025 -35286639 + AT_rich Low_complexity Low_complexity 1 21 0 271 219 119 60 chr1 246907230 246907353 -35286311 + MIR3 SINE MIR 57 189 -19 3052 268 91 30 chr1 246908709 246910226 -35283438 - L2 LINE L2 -1 3312 1698 203 156 0 0 chr1 246910226 246910258 -35283406 + (GTTTG)n Simple_repeat Simple_repeat 2 33 0 224 320 66 33 chr1 246910284 246910406 -35283258 - L2 LINE L2 -3 3310 3185 234 143 24 0 chr1 246912695 246912737 -35280927 + Zaphod DNA AcHobo 2628 2670 -1361 236 314 29 10 chr1 246913336 246913438 -35280226 - L2 LINE L2 -952 2362 2259 446 267 75 5 chr1 246914595 246914782 -35278882 + MIR SINE MIR 13 212 -50 345 236 176 70 chr1 246914952 246915151 -35278513 - MER58A DNA MER1_type -3 221 2 1409 209 75 31 chr1 246916792 246917066 -35276598 - MLT1A2 LTR MaLR 0 374 79 2304 137 66 22 chr1 246917066 246917476 -35276188 + MSTA LTR MaLR 1 428 0 1409 209 75 31 chr1 246917476 246917559 -35276105 - MLT1A2 LTR MaLR -295 79 1 205 244 0 0 chr1 246917813 246917854 -35275810 + GA-rich Low_complexity Low_complexity 3 43 0 551 125 0 0 chr1 246917902 246917982 -35275682 + MADE1 DNA Mariner 1 80 0 225 79 26 0 chr1 246918520 246918558 -35275106 + Tigger1 DNA MER2_type 2212 2250 -168 15355 122 18 29 chr1 246919108 246919325 -35274339 + Tigger1 DNA MER2_type 1 219 -2199 1767 159 28 3 chr1 246919325 246919608 -35274056 - AluJb SINE Alu -22 290 1 15355 122 18 29 chr1 246919608 246920993 -35272671 + Tigger1 DNA MER2_type 219 1568 -850 2215 120 0 3 chr1 246920993 246921292 -35272372 + AluSx SINE Alu 1 298 -14 15355 122 18 29 chr1 246921292 246922134 -35271530 + Tigger1 DNA MER2_type 1568 2418 0 346 228 25 0 chr1 246922214 246922293 -35271371 - MIR SINE MIR -112 150 70 185 108 27 0 chr1 246922935 246922972 -35270692 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr1 246923546 246923566 -35270098 + (T)n Simple_repeat Simple_repeat 1 20 0 208 277 21 0 chr1 246924712 246924806 -35268858 + GA-rich Low_complexity Low_complexity 1 96 0 22 0 0 0 chr1 246925392 246925414 -35268250 + AT_rich Low_complexity Low_complexity 1 22 0 2329 95 10 10 chr1 246925553 246925857 -35267807 - AluSx SINE Alu -8 304 1 210 280 113 36 chr1 246926238 246926406 -35267258 + L3b LINE CR1 1250 1430 -153 1442 75 0 0 chr1 246926745 246926931 -35266733 + L1PA5 LINE L1 5968 6153 -1 225 0 0 0 chr1 246926982 246927007 -35266657 + (A)n Simple_repeat Simple_repeat 1 25 0 705 304 90 32 chr1 246927199 246927601 -35266063 + L2 LINE L2 2885 3309 -4 8147 112 18 20 chr1 246927697 246928859 -35264805 - Tigger1 DNA MER2_type 0 2418 1258 2459 85 0 16 chr1 246928859 246929175 -35264489 + AluY SINE Alu 1 311 0 8147 112 18 20 chr1 246929175 246929241 -35264423 - Tigger1 DNA MER2_type -1160 1258 1193 20609 46 2 4 chr1 246929242 246931739 -35261925 - L1P LINE L1 -3650 2496 4 3592 167 28 5 chr1 246931740 246932375 -35261289 - Tigger1 DNA MER2_type -1762 656 7 381 282 47 47 chr1 246933575 246933724 -35259940 - MIR SINE MIR -66 196 48 223 304 32 13 chr1 246933934 246934045 -35259619 + MIR SINE MIR 85 203 -5 327 211 37 9 chr1 246934957 246935066 -35258598 + GA-rich Low_complexity Low_complexity 2 113 0 2224 89 0 4 chr1 246935780 246936060 -35257604 + AluSc SINE Alu 1 279 -30 297 128 0 0 chr1 246936063 246936102 -35257562 - AluS SINE Alu -36 265 227 925 275 8 21 chr1 246937558 246937794 -35255870 - MIR SINE MIR -7 255 23 2533 114 65 0 chr1 246937900 246938252 -35255412 + THE1C LTR MaLR 1 375 0 506 207 0 0 chr1 246938495 246938582 -35255082 - Tigger1 DNA MER2_type -6 2412 2326 * 5008 109 15 6 chr1 246938574 246939291 -35254373 - Tigger1 DNA MER2_type -1675 743 20 188 386 29 7 chr1 246939736 246939876 -35253788 + MIR SINE MIR 104 246 -16 243 247 185 25 chr1 246940586 246940667 -35252997 + MIR SINE MIR 57 150 -112 4847 126 12 30 chr1 246940674 246941431 -35252233 + Tigger1 DNA MER2_type 1 743 -1675 663 129 0 0 chr1 246941423 246941516 -35252148 + Tigger1 DNA MER2_type 2326 2418 0 * 233 217 261 0 chr1 246941521 246941590 -35252074 + MIR SINE MIR 161 247 -15 264 289 118 26 chr1 246941952 246942104 -35251560 - MIR SINE MIR -2 260 95 414 282 13 27 chr1 246942286 246942435 -35251229 - MER5A DNA MER1_type -6 183 37 543 264 38 19 chr1 246942479 246942638 -35251026 + MIR SINE MIR 81 242 -20 638 252 101 21 chr1 246945087 246945325 -35248339 + L2 LINE L2 1959 2215 -1099 735 256 51 31 chr1 246945986 246946240 -35247424 - MIR SINE MIR -2 260 2 1922 166 3 10 chr1 246948891 246949205 -35244459 + AluSx SINE Alu 1 312 0 286 376 40 32 chr1 246949726 246949973 -35243691 - L2 LINE L2 -2006 1308 1060 362 208 283 0 chr1 246950239 246950345 -35243319 - MLT1J2 LTR MaLR -49 401 266 281 231 0 22 chr1 246950770 246950861 -35242803 + GA-rich Low_complexity Low_complexity 5 93 0 243 0 0 0 chr1 246951966 246951993 -35241671 + (A)n Simple_repeat Simple_repeat 1 27 0 194 237 0 0 chr1 246952505 246952543 -35241121 - MIR3 SINE MIR -20 188 151 * 260 352 25 37 chr1 246952534 246952694 -35240970 + MER5B DNA MER1_type 23 171 -7 366 223 1 0 chr1 246952701 246952791 -35240873 - MIR SINE MIR -69 139 49 23 0 0 0 chr1 246953563 246953586 -35240078 + AT_rich Low_complexity Low_complexity 1 23 0 186 333 111 0 chr1 246953929 246954037 -35239627 + MIR SINE MIR 120 239 -23 271 240 0 40 chr1 246954217 246954292 -35239372 + GA-rich Low_complexity Low_complexity 3 74 0 290 290 35 69 chr1 246954650 246954795 -35238869 + MIR SINE MIR 69 208 -54 252 282 13 13 chr1 246955217 246955295 -35238369 + MIR SINE MIR 59 136 -126 362 355 138 12 chr1 246955297 246955638 -35238026 - L2 LINE L2 0 3313 2930 407 298 168 5 chr1 246955653 246955861 -35237803 - L2 LINE L2 -740 2574 2333 371 293 29 43 chr1 246957367 246957507 -35236157 + L2 LINE L2 3134 3271 -1 201 147 29 0 chr1 246958753 246958787 -35234877 + GA-rich Low_complexity Low_complexity 2 36 0 251 273 91 35 chr1 246959832 246959975 -35233689 - MIR SINE MIR -41 221 71 239 306 54 45 chr1 246965789 246965900 -35227764 + MER117 DNA MER1_type 2 113 -84 499 327 13 69 chr1 246968007 246968147 -35225517 + L3 LINE CR1 1264 1379 -198 1458 170 76 76 chr1 246968147 246968517 -35225147 - MLT1A2 LTR MaLR 0 374 5 499 327 13 69 chr1 246968517 246968682 -35224982 + L3 LINE CR1 1379 1552 -25 273 336 19 0 chr1 246969946 246970050 -35223614 + L3 LINE CR1 1447 1552 -25 344 200 56 11 chr1 246971189 246971279 -35222385 + L3 LINE CR1 1189 1282 -295 273 189 283 38 chr1 246971353 246971459 -35222205 - MIR SINE MIR -74 188 57 210 328 31 0 chr1 246971504 246971568 -35222096 + L3 LINE CR1 1293 1358 -219 180 0 0 0 chr1 246971568 246971588 -35222076 + (T)n Simple_repeat Simple_repeat 1 20 0 12087 138 48 9 chr1 246971741 246973711 -35219953 - Tigger1 DNA MER2_type -370 2048 1 239 376 34 8 chr1 246974589 246974706 -35218958 - MIR3 SINE MIR -7 201 82 498 269 13 18 chr1 246975133 246975283 -35218381 - MIR3 SINE MIR -3 205 57 180 0 0 0 chr1 246975772 246975792 -35217872 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr1 246977464 246977486 -35216178 + AT_rich Low_complexity Low_complexity 1 22 0 2304 164 117 26 chr1 246977940 246978402 -35215262 + MLT1D LTR MaLR 2 505 0 34 65 0 0 chr1 246978437 246978499 -35215165 + AT_rich Low_complexity Low_complexity 1 62 0 1548 163 57 15 chr1 246980886 246981150 -35212514 - AluJb SINE Alu -37 275 1 300 53 0 0 chr1 246981517 246981555 -35212109 + (CA)n Simple_repeat Simple_repeat 2 39 0 667 276 124 59 chr1 246981710 246982366 -35211298 - L2 LINE L2 -55 3258 2564 233 294 16 48 chr1 246982743 246982869 -35210795 - L1M4 LINE L1 -1488 4658 4537 2502 158 57 14 chr1 246983997 246984439 -35209225 - MLT2C2 LTR ERVL -3 461 1 255 300 0 0 chr1 246984878 246984948 -35208716 + T-rich Low_complexity Low_complexity 5 74 0 667 236 29 0 chr1 246986795 246986935 -35206729 + MIR SINE MIR 39 182 -80 2269 92 0 29 chr1 246987226 246987541 -35206123 + AluSg SINE Alu 1 306 -4 192 77 0 0 chr1 246989177 246989203 -35204461 + (CA)n Simple_repeat Simple_repeat 1 26 0 1397 248 21 21 chr1 246989353 246989733 -35203931 - L1ME1 LINE L1 -6 6160 5784 207 292 11 11 chr1 246989737 246989826 -35203838 + (TA)n Simple_repeat Simple_repeat 1 89 0 569 338 43 34 chr1 246990889 246991542 -35202122 - L1M4 LINE L1 -1559 4587 3929 1127 138 0 0 chr1 246992018 246992185 -35201479 + AluSg/x SINE Alu 143 309 -1 197 341 124 67 chr1 246992233 246992500 -35201164 + L2 LINE L2 2830 3111 -161 30 45 0 0 chr1 246992726 246992770 -35200894 + AT_rich Low_complexity Low_complexity 1 44 0 281 223 92 31 chr1 246992802 246992932 -35200732 + L1MC4 LINE L1 6608 6745 -1297 933 269 33 9 chr1 246993332 246993544 -35200120 + MER58A DNA MER1_type 1 217 -7 355 277 155 0 chr1 246994682 246994830 -35198834 + MIR SINE MIR 92 262 0 623 316 14 9 chr1 246995961 246996179 -35197485 - MIR SINE MIR -11 251 33 508 153 0 18 chr1 246996422 246996533 -35197131 + GA-rich Low_complexity Low_complexity 3 111 0 210 171 0 0 chr1 246996606 246996647 -35197017 + (TG)n Simple_repeat Simple_repeat 2 42 0 439 276 238 28 chr1 246996905 246997224 -35196440 + L2 LINE L2 2928 3313 0 248 0 31 0 chr1 246997538 246997570 -35196094 + (CA)n Simple_repeat Simple_repeat 1 33 0 670 261 30 10 chr1 246997593 246997792 -35195872 - MIR SINE MIR 0 262 60 2381 120 48 28 chr1 246998329 246998686 -35194978 + THE1B LTR MaLR 1 364 0 386 279 39 0 chr1 246999677 246999781 -35193883 + MIR3 SINE MIR 98 205 -3 795 183 0 42 chr1 247000495 247000637 -35193027 - MER45A DNA AcHobo 0 178 43 679 245 42 68 chr1 247000663 247000900 -35192764 - MIR SINE MIR -4 258 28 186 293 116 43 chr1 247001750 247001914 -35191750 + L3b LINE CR1 1255 1430 -153 231 271 175 62 chr1 247003633 247003810 -35189854 + L2 LINE L2 3067 3263 -9 22 0 0 0 chr1 247004030 247004052 -35189612 + AT_rich Low_complexity Low_complexity 1 22 0 378 305 27 43 chr1 247005735 247005922 -35187742 - L2 LINE L2 -3 3310 3127 349 239 9 35 chr1 247006163 247006276 -35187388 + L1ME1 LINE L1 4549 4658 -1488 452 258 104 75 chr1 247006516 247006756 -35186908 + MER112 DNA MER1_type 8 254 -6 222 37 0 0 chr1 247007571 247007598 -35186066 + (TG)n Simple_repeat Simple_repeat 1 27 0 535 246 120 85 chr1 247008122 247008556 -35185108 + MLT1J LTR MaLR 44 492 -19 327 379 12 6 chr1 247008982 247009143 -35184521 - MER5A DNA MER1_type -2 187 26 366 74 0 0 chr1 247009221 247009275 -35184389 + (GA)n Simple_repeat Simple_repeat 1 54 0 516 250 16 32 chr1 247009882 247010006 -35183658 - MIR SINE MIR -60 148 27 244 296 0 23 chr1 247010762 247010850 -35182814 + CT-rich Low_complexity Low_complexity 4 89 0 207 0 0 0 chr1 247010852 247010875 -35182789 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 499 120 46 23 chr1 247013138 247013313 -35180351 + (TA)n Simple_repeat Simple_repeat 2 180 0 1421 234 12 6 chr1 247013323 247013644 -35180020 - MLT2C1 LTR ERVL -55 342 20 270 56 0 0 chr1 247014938 247014974 -35178690 + (CA)n Simple_repeat Simple_repeat 1 36 0 626 250 108 15 chr1 247015886 247016090 -35177574 - MIR SINE MIR -11 251 29 3469 184 118 12 chr1 247016214 247017137 -35176527 + L1ME1 LINE L1 5157 6162 -4 723 288 67 42 chr1 247017160 247017473 -35176191 - LTR16C LTR ERVL -1 490 170 469 206 69 69 chr1 247017751 247017911 -35175753 - MIR SINE MIR -21 241 82 538 261 97 81 chr1 247019947 247020307 -35173357 + MLT1I LTR MaLR 6 371 -38 6019 128 14 2 chr1 247023115 247024012 -35169652 + Tigger1 DNA MER2_type 32 939 -1479 2779 146 21 4 chr1 247024007 247024472 -35169192 + Tigger1 DNA MER2_type 1946 2418 0 * 1433 288 58 65 chr1 247024477 247025336 -35168328 + ERVL LTR ERVL 1276 2201 -2795 253 311 38 0 chr1 247025353 247025459 -35168205 + ERVL LTR ERVL 5274 5383 -381 249 194 14 42 chr1 247025666 247025738 -35167926 + LTR16A LTR ERVL 106 175 -275 413 333 97 13 chr1 247025804 247026041 -35167623 + LTR16A1 LTR ERVL 199 455 -2 232 345 17 26 chr1 247029879 247029995 -35163669 + L3b LINE CR1 1150 1264 -319 240 156 31 78 chr1 247030096 247030160 -35163504 + L3 LINE CR1 1516 1576 -1 791 213 139 126 chr1 247030644 247031010 -35162654 + MLT1A2 LTR MaLR 4 374 0 3927 180 16 23 chr1 247031010 247031812 -35161852 + MLT1A2-int LTR MaLR 1 888 -483 464 161 58 0 chr1 247031880 247031967 -35161697 + MLT-int LTR MaLR 680 771 -964 2075 173 16 62 chr1 247032098 247032531 -35161133 + MLT1B-int LTR MaLR 1317 1729 -6 1554 201 27 74 chr1 247032539 247032946 -35160718 + MLT1B LTR MaLR 3 390 0 337 250 69 69 chr1 247033944 247034060 -35159604 + MIR SINE MIR 16 131 -77 618 285 38 25 chr1 247034068 247034303 -35159361 + MIR SINE MIR 7 244 -18 195 271 100 0 chr1 247034313 247034383 -35159281 + MIR SINE MIR 116 192 -70 318 289 79 0 chr1 247034969 247035083 -35158581 - MER103 DNA DNA -43 123 1 309 51 0 0 chr1 247035785 247035824 -35157840 + (CA)n Simple_repeat Simple_repeat 1 39 0 288 351 190 11 chr1 247036077 247036356 -35157308 + L2 LINE L2 2502 2830 -484 213 299 39 0 chr1 247036429 247036506 -35157158 + L2 LINE L2 3187 3266 -6 1844 153 188 37 chr1 247036584 247037016 -35156648 - MLT1D LTR MaLR -8 497 1 216 362 145 40 chr1 247037302 247037404 -35156260 - L2 LINE L2 -506 2808 2718 886 236 62 0 chr1 247037404 247037599 -35156065 + MER3 DNA MER1_type 1 207 -2 216 362 145 40 chr1 247037599 247038488 -35155176 - L2 LINE L2 -596 2718 1713 242 238 16 16 chr1 247039378 247039441 -35154223 + GA-rich Low_complexity Low_complexity 2 64 0 236 246 31 0 chr1 247039810 247039875 -35153789 - MIR SINE MIR -64 144 78 351 154 0 0 chr1 247040038 247040103 -35153561 + (CA)n Simple_repeat Simple_repeat 2 66 0 990 217 5 5 chr1 247040362 247040551 -35153113 - MER5A DNA MER1_type 0 189 1 207 220 20 0 chr1 247040960 247041010 -35152654 - L2 LINE L2 0 3272 3222 226 328 243 0 chr1 247041159 247041336 -35152328 - L2 LINE L2 -1026 2288 2069 1292 248 41 15 chr1 247041671 247042058 -35151606 + L1ME1 LINE L1 5774 6163 -3 2173 168 63 21 chr1 247042098 247042478 -35151186 + MSTD LTR MaLR 1 396 0 2194 138 0 0 chr1 247044396 247044701 -35148963 + AluSx SINE Alu 1 305 -7 206 356 37 43 chr1 247045326 247045514 -35148150 - MIR SINE MIR -54 208 22 305 368 73 61 chr1 247045677 247046019 -35147645 + L2 LINE L2 2918 3263 -9 219 69 0 0 chr1 247046026 247046055 -35147609 + (ATG)n Simple_repeat Simple_repeat 1 29 0 618 303 169 33 chr1 247046131 247046527 -35147137 - MLT1J2 LTR MaLR 0 450 1 739 274 146 30 chr1 247047869 247048238 -35145426 - MLT1J2 LTR MaLR -15 435 24 513 266 69 27 chr1 247049864 247050052 -35143612 + MIR SINE MIR 54 249 -13 229 274 32 42 chr1 247050642 247050737 -35142927 + L3 LINE CR1 376 469 -1108 1742 132 44 7 chr1 247051015 247051310 -35142354 - L1MA5A LINE L1 0 6297 5992 868 112 0 24 chr1 247051320 247051445 -35142219 - L1PB1 LINE L1 -1 6150 6029 2316 232 58 67 chr1 247052431 247052890 -35140774 + L1ME1 LINE L1 4815 5277 -889 460 75 0 25 chr1 247052890 247052970 -35140694 + (TA)n Simple_repeat Simple_repeat 2 79 0 2243 122 0 3 chr1 247052978 247053289 -35140375 + AluSg SINE Alu 1 310 0 2316 232 58 67 chr1 247053289 247054162 -35139502 + L1ME1 LINE L1 5284 6148 -18 237 167 0 19 chr1 247054164 247054218 -35139446 + A-rich Low_complexity Low_complexity 3 55 0 794 203 82 11 chr1 247054825 247055081 -35138583 + MER2 DNA MER2_type 2 344 -1 253 277 118 50 chr1 247055591 247055710 -35137954 + L2 LINE L2 3145 3271 -1 552 216 6 17 chr1 247055804 247055980 -35137684 + GA-rich Low_complexity Low_complexity 3 176 0 214 297 31 0 chr1 247056953 247057017 -35136647 - L2 LINE L2 -2 3270 3205 190 266 96 11 chr1 247058017 247058111 -35135553 - MIR SINE MIR -87 121 20 230 372 63 34 chr1 247058250 247058457 -35135207 + MIR SINE MIR 50 262 0 677 58 128 0 chr1 247058716 247058802 -35134862 + AluSg/x SINE Alu 198 294 -18 719 214 113 0 chr1 247058802 247058970 -35134694 - MIR SINE MIR -64 198 12 720 292 63 47 chr1 247062555 247063131 -35130533 + L1ME4a LINE L1 5326 5910 -211 280 258 136 15 chr1 247063153 247063285 -35130379 + L2 LINE L2 3166 3313 0 771 240 72 23 chr1 247063289 247063510 -35130154 - MIR SINE MIR -24 238 7 245 250 56 100 chr1 247063510 247063670 -35129994 + L1ME4a LINE L1 5952 6104 -17 180 0 0 0 chr1 247063745 247063765 -35129899 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 230 261 15 15 chr1 247064074 247064139 -35129525 - L2 LINE L2 -7 3306 3242 940 200 0 0 chr1 247064145 247064315 -35129349 - AluJb SINE Alu -7 305 136 227 240 67 27 chr1 247064540 247064615 -35129049 + L2 LINE L2 3147 3224 -48 211 396 77 11 chr1 247064877 247065150 -35128514 - L2 LINE L2 -470 2844 2554 251 226 69 49 chr1 247066683 247066785 -35126879 + MIR SINE MIR 138 241 -21 344 161 65 137 chr1 247066862 247066986 -35126678 - LTR67 LTR ERVL -10 547 433 2318 78 0 26 chr1 247067009 247067316 -35126348 + AluY SINE Alu 5 303 -8 274 83 0 0 chr1 247067497 247067533 -35126131 + MLT1J LTR MaLR 458 493 -18 288 91 0 0 chr1 247068148 247068192 -35125472 + (TCC)n Simple_repeat Simple_repeat 2 45 0 2189 131 24 44 chr1 247068441 247068824 -35124840 + THE1C LTR MaLR 1 375 0 187 175 25 25 chr1 247070543 247070583 -35123081 + MIR SINE MIR 78 117 -91 191 281 24 49 chr1 247070674 247070756 -35122908 - MIR SINE MIR -120 142 63 30 27 0 0 chr1 247071784 247071821 -35121843 + AT_rich Low_complexity Low_complexity 1 37 0 270 295 0 39 chr1 247072641 247072719 -35120945 - L2 LINE L2 0 3313 3239 2207 222 58 24 chr1 247073097 247073647 -35120017 - L1ME2 LINE L1 -1 6163 5595 1569 22 27 11 chr1 247073658 247073842 -35119822 - L1PA2 LINE L1 -5 6150 5964 3463 18 0 0 chr1 247073842 247074230 -35119434 + L1PA2 LINE L1 5593 5980 -175 1044 179 88 58 chr1 247074231 247074351 -35119313 - L1ME2 LINE L1 -575 5589 5474 2381 96 7 0 chr1 247074351 247074652 -35119012 - AluSq SINE Alu -10 303 1 1044 179 88 58 chr1 247074652 247074932 -35118732 - L1ME2 LINE L1 -690 5474 5182 219 341 67 45 chr1 247075187 247075366 -35118298 + L2 LINE L2 2243 2425 -889 236 213 49 0 chr1 247075528 247075589 -35118075 + L2 LINE L2 2550 2613 -701 695 282 127 65 chr1 247075607 247076040 -35117624 + L2 LINE L2 2854 3313 0 304 292 39 46 chr1 247076812 247076942 -35116722 + MIR3 SINE MIR 15 143 -65 244 164 18 55 chr1 247077088 247077143 -35116521 - MIR SINE MIR -1 261 209 330 98 0 0 chr1 247077481 247077532 -35116132 + (CA)n Simple_repeat Simple_repeat 2 52 0 683 234 101 5 chr1 247077538 247077726 -35115938 - MIR SINE MIR -8 254 49 3214 58 5 0 chr1 247077730 247078112 -35115552 + L1PA8 LINE L1 5782 6165 -7 517 293 13 27 chr1 247078371 247078521 -35115143 + MIR3 SINE MIR 15 162 -46 841 189 30 0 chr1 247079168 247079332 -35114332 + L1MA8 LINE L1 6118 6286 -5 26 0 0 0 chr1 247079336 247079362 -35114302 + AT_rich Low_complexity Low_complexity 1 26 0 353 211 13 0 chr1 247079775 247079851 -35113813 + MER116 DNA Mariner 1 77 -3 202 265 162 15 chr1 247079856 247079924 -35113740 - L2 LINE L2 -35 3237 3160 1058 162 0 68 chr1 247080633 247080824 -35112840 - MER45A DNA AcHobo 0 178 1 195 186 58 139 chr1 247080960 247081046 -35112618 - MIR SINE MIR -52 210 132 259 196 0 0 chr1 247081048 247081094 -35112570 + MLT2B2 LTR ERVL 8 53 -462 216 358 79 6 chr1 247081463 247081628 -35112036 - L3b LINE CR1 -81 1502 1326 965 211 22 57 chr1 247081841 247082068 -35111596 + MER20 DNA MER1_type 1 219 0 366 293 35 40 chr1 247082077 247082275 -35111389 - MER117 DNA MER1_type 0 197 1 218 161 0 36 chr1 247082388 247082444 -35111220 + GA-rich Low_complexity Low_complexity 4 57 0 510 347 5 5 chr1 247084846 247085039 -35108625 - MIR3 SINE MIR -13 195 3 624 246 27 55 chr1 247087647 247087808 -35105856 - MER5B DNA MER1_type 0 178 21 2014 213 23 39 chr1 247087808 247088321 -35105343 + MLT1D LTR MaLR 1 505 0 624 246 27 55 chr1 247088321 247088342 -35105322 - MER5B DNA MER1_type -157 21 1 539 349 147 21 chr1 247088342 247088723 -35104941 + L2 LINE L2 2875 3304 -9 821 268 67 63 chr1 247089957 247090674 -35102990 - L1ME LINE L1 -4952 1309 546 305 295 71 36 chr1 247092525 247092637 -35101027 + MIR SINE MIR 31 146 -116 427 103 0 0 chr1 247092638 247092696 -35100968 - U2 snRNA snRNA -130 58 1 231 296 1 27 chr1 247093988 247094061 -35099603 + MIR SINE MIR 6 79 -129 1603 185 0 40 chr1 247094455 247094782 -35098882 + AluJo SINE Alu 1 315 0 32 26 0 0 chr1 247095006 247095045 -35098619 + AT_rich Low_complexity Low_complexity 1 39 0 294 282 26 0 chr1 247095117 247095234 -35098430 + (TA)n Simple_repeat Simple_repeat 1 120 0 431 286 38 93 chr1 247095347 247095766 -35097898 + MLT1J LTR MaLR 116 511 0 281 352 153 27 chr1 247096352 247096764 -35096900 + L2 LINE L2 2388 2851 -463 183 257 143 0 chr1 247097117 247097187 -35096477 - L3 LINE CR1 -57 1520 1441 23 54 0 0 chr1 247097878 247097915 -35095749 + AT_rich Low_complexity Low_complexity 1 37 0 579 261 127 37 chr1 247099069 247099584 -35094080 - L1MC/D LINE L1 -743 5403 4897 1527 138 165 4 chr1 247099813 247100073 -35093591 - AluSx SINE Alu 0 302 1 185 0 0 39 chr1 247100455 247100481 -35093183 + (TA)n Simple_repeat Simple_repeat 1 25 0 226 297 14 27 chr1 247102843 247102917 -35090747 - MER5A DNA MER1_type 0 189 117 2114 121 16 7 chr1 247103913 247104218 -35089446 + AluSp SINE Alu 1 308 -5 393 122 0 0 chr1 247104435 247104509 -35089155 + (TC)n Simple_repeat Simple_repeat 1 74 0 197 108 27 0 chr1 247104964 247105001 -35088663 + CT-rich Low_complexity Low_complexity 2 39 0 3681 119 50 0 chr1 247105677 247106179 -35087485 - MER1A DNA MER1_type 0 527 1 22 0 0 0 chr1 247106883 247106905 -35086759 + AT_rich Low_complexity Low_complexity 1 22 0 368 211 151 30 chr1 247107634 247107800 -35085864 - Charlie7 DNA MER1_type 0 2612 2427 324 122 0 95 chr1 247107769 247107843 -35085821 - Charlie7 DNA MER1_type -2503 109 43 * 207 301 0 14 chr1 247108665 247108738 -35084926 + (TA)n Simple_repeat Simple_repeat 1 72 0 325 250 42 31 chr1 247110082 247110178 -35083486 + L2 LINE L2 3190 3286 -27 586 284 102 33 chr1 247110230 247110696 -35082968 + MLT1H1 LTR MaLR 21 549 0 246 105 0 0 chr1 247111432 247111470 -35082194 + (T)n Simple_repeat Simple_repeat 1 38 0 329 245 116 38 chr1 247112854 247113000 -35080664 - MLT1J2 LTR MaLR -133 276 103 252 0 0 0 chr1 247113000 247113028 -35080636 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 329 245 116 38 chr1 247113028 247113120 -35080544 - MLT1J2 LTR MaLR -306 103 20 718 224 153 27 chr1 247113509 247113732 -35079932 - MLT1J2 LTR MaLR 0 450 200 348 43 0 0 chr1 247113732 247113778 -35079886 + (GA)n Simple_repeat Simple_repeat 1 46 0 3845 153 11 57 chr1 247114748 247115485 -35078179 + L1MA9 LINE L1 5580 6282 -30 333 258 132 99 chr1 247115773 247115861 -35077803 - MIR SINE MIR -30 232 148 4104 62 2 0 chr1 247115861 247116357 -35077307 - L1PA7 LINE L1 -5 6149 5653 333 258 132 99 chr1 247116357 247116481 -35077183 - MIR SINE MIR -114 148 13 858 213 48 5 chr1 247116595 247116783 -35076881 - MIR SINE MIR 0 262 67 204 125 0 0 chr1 247117370 247117402 -35076262 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 366 302 196 6 chr1 247118046 247118225 -35075439 - MIR SINE MIR -48 214 2 297 198 259 9 chr1 247118248 247118364 -35075300 + L1ME4a LINE L1 5971 6115 -6 509 234 23 3 chr1 247118887 247119017 -35074647 + MIR SINE MIR 16 143 -65 186 43 0 0 chr1 247120652 247120675 -35072989 + (CAA)n Simple_repeat Simple_repeat 2 24 0 206 219 0 0 chr1 247121084 247121125 -35072539 + GA-rich Low_complexity Low_complexity 2 42 0 1019 78 0 35 chr1 247122430 247122572 -35071092 + AluSg/x SINE Alu 168 304 -8 273 321 25 0 chr1 247123135 247123216 -35070448 - L2 LINE L2 0 3313 3231 * 534 270 137 28 chr1 247123208 247123456 -35070208 + L2 LINE L2 3037 3311 -2 381 313 110 59 chr1 247123536 247123860 -35069804 - L2 LINE L2 -194 3078 2715 235 260 21 73 chr1 247124360 247124456 -35069208 + L2 LINE L2 3219 3309 -4 642 254 12 30 chr1 247124503 247124668 -35068996 - MIR SINE MIR -11 251 90 1882 92 7 57 chr1 247125042 247125323 -35068341 - AluSx SINE Alu -22 290 24 23 0 0 0 chr1 247127206 247127229 -35066435 + AT_rich Low_complexity Low_complexity 1 23 0 228 135 0 0 chr1 247127272 247127309 -35066355 + (A)n Simple_repeat Simple_repeat 1 37 0 309 26 0 0 chr1 247127644 247127682 -35065982 + (CA)n Simple_repeat Simple_repeat 2 39 0 453 300 6 17 chr1 247128842 247129022 -35064642 + A-rich Low_complexity Low_complexity 3 180 0 424 284 108 0 chr1 247129783 247129931 -35063733 + MIR SINE MIR 23 186 -76 244 265 86 25 chr1 247129945 247130107 -35063557 + MER104 DNA Tc2 4 175 -5 386 268 52 74 chr1 247132595 247132819 -35060845 - MIR SINE MIR -33 229 8 215 209 163 23 chr1 247132785 247132846 -35060818 + MER5A DNA MER1_type 68 146 -43 * 288 0 0 0 chr1 247132846 247132878 -35060786 + (CAA)n Simple_repeat Simple_repeat 2 33 0 215 209 163 23 chr1 247132878 247132902 -35060762 + MER5A DNA MER1_type 146 165 -24 297 151 0 0 chr1 247135530 247135583 -35058081 + (TGG)n Simple_repeat Simple_repeat 2 54 0 210 71 0 0 chr1 247138369 247138397 -35055267 + (A)n Simple_repeat Simple_repeat 1 28 0 215 130 0 22 chr1 247138523 247138569 -35055095 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 577 198 15 15 chr1 247138880 247139095 -35054569 + CT-rich Low_complexity Low_complexity 1 215 0 381 22 0 0 chr1 247139231 247139277 -35054387 + (GA)n Simple_repeat Simple_repeat 2 47 0 276 100 0 0 chr1 247140954 247140994 -35052670 + (A)n Simple_repeat Simple_repeat 1 40 0 207 0 0 0 chr1 247141451 247141474 -35052190 + (GA)n Simple_repeat Simple_repeat 2 24 0 464 32 16 0 chr1 247141480 247141542 -35052122 + (TG)n Simple_repeat Simple_repeat 1 63 0 477 0 0 0 chr1 247145571 247145624 -35048040 + (TA)n Simple_repeat Simple_repeat 2 54 0 212 271 0 0 chr1 247146241 247146300 -35047364 + T-rich Low_complexity Low_complexity 1 59 0 202 344 0 0 chr1 247150597 247150658 -35043006 + L2 LINE L2 3211 3271 -1 300 27 0 0 chr1 247150864 247150901 -35042763 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 53 0 0 chr1 247152661 247152699 -35040965 + AT_rich Low_complexity Low_complexity 1 38 0 288 77 0 0 chr1 247153210 247153249 -35040415 + (T)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr1 247154457 247154478 -35039186 + AT_rich Low_complexity Low_complexity 1 21 0 357 93 0 0 chr1 247156751 247156805 -35036859 + (TG)n Simple_repeat Simple_repeat 1 54 0 186 167 0 0 chr1 247157582 247157618 -35036046 + (TG)n Simple_repeat Simple_repeat 1 36 0 226 200 14 71 chr1 247158475 247158545 -35035119 + L1MD3 LINE L1 6612 6677 -1318 2243 107 0 10 chr1 247158877 247159175 -35034489 - AluSq SINE Alu -18 295 1 184 73 0 49 chr1 247159211 247159252 -35034412 + (CAAAAA)n Simple_repeat Simple_repeat 4 42 0 270 0 0 0 chr1 247163959 247163989 -35029675 + (TG)n Simple_repeat Simple_repeat 2 31 0 294 186 0 17 chr1 247165351 247165410 -35028254 - MIR SINE MIR -3 259 202 180 240 20 20 chr1 247170709 247170759 -35022905 + L2 LINE L2 2083 2132 -1182 183 343 37 69 chr1 247172232 247172448 -35021216 - L3 LINE CR1 -310 1267 1059 870 200 109 14 chr1 247172964 247173174 -35020490 + MIR SINE MIR 23 252 -10 1083 169 0 11 chr1 247174163 247174341 -35019323 - AluSg/x SINE Alu 0 312 137 715 234 122 0 chr1 247176211 247176399 -35017265 + MER58C DNA MER1_type 1 211 -4 244 203 51 34 chr1 247176424 247176483 -35017181 + MIR3 SINE MIR 149 208 0 2365 84 0 7 chr1 247176484 247176782 -35016882 - AluSg1 SINE Alu -13 296 1 23 0 0 0 chr1 247178675 247178698 -35014966 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr1 247181855 247181888 -35011776 + (TG)n Simple_repeat Simple_repeat 1 33 0 191 36 36 0 chr1 247183818 247183846 -35009818 + (CA)n Simple_repeat Simple_repeat 2 30 0 537 247 53 18 chr1 247183928 247184098 -35009566 + MIR SINE MIR 87 262 0 234 333 0 0 chr1 247188181 247188262 -35005402 + (TA)n Simple_repeat Simple_repeat 2 82 0 351 44 0 0 chr1 247188940 247188985 -35004679 + (CA)n Simple_repeat Simple_repeat 1 45 0 220 178 27 41 chr1 247194163 247194236 -34999428 + (TA)n Simple_repeat Simple_repeat 1 72 0 824 138 0 0 chr1 247194973 247195103 -34998561 - MER30 DNA MER1_type -100 130 1 298 258 10 10 chr1 247195415 247195512 -34998152 + L1ME LINE L1 5684 5780 -382 2151 119 0 3 chr1 247195836 247196130 -34997534 + AluSx SINE Alu 1 293 -19 321 68 0 0 chr1 247196159 247196203 -34997461 + (CA)n Simple_repeat Simple_repeat 1 44 0 8140 121 29 12 chr1 247196243 247198172 -34995492 + L1PA10 LINE L1 4217 6157 -11 21 36 0 0 chr1 247198173 247198201 -34995463 + AT_rich Low_complexity Low_complexity 1 28 0 396 263 36 22 chr1 247200479 247200616 -34993048 + MIR SINE MIR 87 225 -37 2281 88 0 16 chr1 247201640 247201946 -34991718 - AluSg SINE Alu -9 301 1 282 339 16 0 chr1 247202216 247202340 -34991324 - MIR SINE MIR 0 262 137 231 36 0 0 chr1 247202343 247202371 -34991293 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 2309 105 7 0 chr1 247202371 247202676 -34990988 - AluSp SINE Alu -4 309 3 22 35 0 0 chr1 247202949 247202978 -34990686 + AT_rich Low_complexity Low_complexity 1 29 0 265 220 0 0 chr1 247203009 247203068 -34990596 + L2 LINE L2 3255 3313 0 1574 185 17 33 chr1 247203222 247203524 -34990140 + AluJo SINE Alu 1 297 -15 226 324 37 0 chr1 247203580 247203688 -34989976 + L1M4 LINE L1 4879 4990 -1156 2132 75 7 49 chr1 247204057 247204365 -34989299 + AluY SINE Alu 1 295 -16 287 239 55 85 chr1 247204379 247204449 -34989215 + L1P5 LINE L1 5319 5390 -780 2287 125 0 0 chr1 247204449 247204761 -34988903 + AluSx SINE Alu 1 312 0 287 239 55 85 chr1 247204761 247204912 -34988752 + L1P5 LINE L1 5390 5536 -634 512 233 52 47 chr1 247205201 247205217 -34988447 + MER104 DNA MER2_type 5 19 -1879 2412 81 3 0 chr1 247205217 247205513 -34988151 - AluSg SINE Alu -13 297 1 512 233 52 47 chr1 247205513 247205668 -34987996 + MER104 DNA MER2_type 19 177 -3 968 7 68 0 chr1 247206439 247206585 -34987079 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 260 299 102 8 chr1 247206605 247206732 -34986932 - L2 LINE L2 0 3272 3134 304 324 95 74 chr1 247207104 247207484 -34986180 - L2 LINE L2 -70 3243 2856 416 293 61 86 chr1 247207674 247208114 -34985550 + L2 LINE L2 2423 2851 -463 195 357 41 71 chr1 247208214 247208483 -34985181 + L2 LINE L2 2715 2975 -339 409 295 69 0 chr1 247208540 247208713 -34984951 + HAL1 LINE L1 1578 1762 -745 275 258 21 62 chr1 247208745 247208842 -34984822 + HAL1 LINE L1 1826 1918 -589 286 146 73 0 chr1 247209060 247209115 -34984549 + L1M4 LINE L1 2294 2352 -3794 304 252 122 9 chr1 247209211 247209318 -34984346 + L2 LINE L2 3193 3311 -2 213 108 0 0 chr1 247209405 247209442 -34984222 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 345 187 55 33 chr1 247209487 247209578 -34984086 + HAL1b LINE L1 750 842 -506 2497 252 92 21 chr1 247209715 247209818 -34983846 + L2 LINE L2 2151 2245 -1068 248 0 31 0 chr1 247209818 247209850 -34983814 + (TA)n Simple_repeat Simple_repeat 1 33 0 2413 67 3 25 chr1 247209850 247210166 -34983498 - AluY SINE Alu -2 309 1 2497 252 92 21 chr1 247210166 247210935 -34982729 + L2 LINE L2 2244 3085 -228 309 236 0 0 chr1 247210937 247210992 -34982672 - MIR SINE MIR -201 61 7 2285 210 102 78 chr1 247211451 247212088 -34981576 + MLT1E1 LTR MaLR 3 654 0 353 316 142 11 chr1 247212477 247212667 -34980997 + MIR SINE MIR 48 262 0 562 252 0 0 chr1 247212699 247212814 -34980850 - MLT1E1 LTR MaLR -8 646 532 210 322 11 33 chr1 247213649 247213739 -34979925 - MIR3 SINE MIR -115 93 6 956 246 0 6 chr1 247213905 247214084 -34979580 + MER45A DNA AcHobo 1 178 0 468 91 0 0 chr1 247216719 247216785 -34976879 + (TG)n Simple_repeat Simple_repeat 1 66 0 183 205 0 0 chr1 247220070 247220109 -34973555 + A-rich Low_complexity Low_complexity 1 39 0 885 102 87 0 chr1 247221821 247221948 -34971716 + MER85 DNA T2_type 1 138 -1 381 233 19 82 chr1 247222991 247223127 -34970537 + MIR SINE MIR 63 192 -61 318 26 0 0 chr1 247225393 247225432 -34968232 + (A)n Simple_repeat Simple_repeat 1 39 0 2116 68 64 4 chr1 247226866 247227146 -34966518 - AluY SINE Alu -11 300 4 2415 191 35 51 chr1 247227147 247227755 -34965909 + L1MC4 LINE L1 7445 8042 0 507 268 22 14 chr1 247227818 247227940 -34965724 + MLT1F1 LTR MaLR 1 123 -470 1609 178 37 9 chr1 247227940 247228350 -34965314 + MER6 DNA MER2_type 1 486 -379 5346 140 20 2 chr1 247228361 247228398 -34965266 - L1PA12 LINE L1 -2 6166 6131 2298 145 30 33 chr1 247228398 247228763 -34964901 + THE1B LTR MaLR 1 364 0 5346 140 20 2 chr1 247228763 247229562 -34964102 - L1PA12 LINE L1 -37 6131 5315 836 158 73 0 chr1 247229560 247229737 -34963927 + L1PA12 LINE L1 5108 5297 -849 * 2327 117 25 38 chr1 247229739 247229881 -34963783 + MER6 DNA MER2_type 478 620 -245 2219 110 3 3 chr1 247229881 247230181 -34963483 - AluSg SINE Alu -10 300 1 2327 117 25 38 chr1 247230181 247230431 -34963233 + MER6 DNA MER2_type 620 865 0 1120 208 105 98 chr1 247230435 247230843 -34962821 + MLT1F1 LTR MaLR 125 535 -32 225 0 0 0 chr1 247230843 247230868 -34962796 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1162 162 5 5 chr1 247230868 247231053 -34962611 - AluJo SINE Alu -40 272 88 682 347 21 0 chr1 247231215 247231405 -34962259 + MER91A DNA MER1_type 3 196 0 933 289 40 24 chr1 247231405 247231779 -34961885 - L1MC/D LINE L1 -1994 5814 5435 1110 291 78 16 chr1 247232243 247232680 -34960984 - LTR16B LTR ERVL 0 464 1 3294 74 23 91 chr1 247232833 247233207 -34960457 + MLT2A2 LTR ERVL 1 336 -117 423 0 0 0 chr1 247233207 247233254 -34960410 + (CA)n Simple_repeat Simple_repeat 2 48 0 3294 74 23 91 chr1 247233254 247233365 -34960299 + MLT2A2 LTR ERVL 336 453 0 201 308 0 0 chr1 247235386 247235438 -34958226 + L2 LINE L2 3213 3264 -8 2175 149 47 14 chr1 247235622 247235985 -34957679 + THE1C LTR MaLR 1 375 0 933 327 49 65 chr1 247236629 247236791 -34956873 - L3 LINE CR1 -37 1540 1377 2150 109 16 26 chr1 247236791 247237104 -34956560 + AluSg SINE Alu 1 310 0 933 327 49 65 chr1 247237104 247237546 -34956118 - L3 LINE CR1 -200 1377 944 8096 164 15 3 chr1 247237546 247239698 -34953966 - L1PA14 LINE L1 -2 6159 3986 933 327 49 65 chr1 247239698 247239766 -34953898 - L3 LINE CR1 -633 944 876 225 233 0 0 chr1 247239767 247239810 -34953854 + MIR SINE MIR 220 262 0 * 296 356 13 81 chr1 247239796 247240032 -34953632 - L3 LINE CR1 -848 729 510 1658 171 13 94 chr1 247240595 247240988 -34952676 + MLT1A1 LTR MaLR 1 361 -4 267 31 0 0 chr1 247241278 247241310 -34952354 + (CA)n Simple_repeat Simple_repeat 1 32 0 230 242 132 44 chr1 247241355 247241446 -34952218 - MIR SINE MIR -55 207 109 2035 237 47 0 chr1 247241464 247241894 -34951770 + L1PA15 LINE L1 1 450 -6337 * 17294 199 26 15 chr1 247241878 247244759 -34948905 + L1PA15 LINE L1 1392 4400 -2416 563 0 15 0 chr1 247244759 247244826 -34948838 + (TAAAA)n Simple_repeat Simple_repeat 4 71 0 17294 199 26 15 chr1 247244826 247247271 -34946393 + L1PA15 LINE L1 4400 6816 0 219 277 0 0 chr1 247247303 247247364 -34946300 - MIR SINE MIR -108 100 54 233 333 179 40 chr1 247247401 247247780 -34945884 - L3 LINE CR1 -1070 507 76 1976 116 34 3 chr1 247247821 247248113 -34945551 + AluSx SINE Alu 1 301 -11 4924 259 111 52 chr1 247248658 247249705 -34943959 - L2 LINE L2 -18 3295 2311 1738 144 96 69 chr1 247249705 247250081 -34943583 - MLT1B LTR MaLR -2 388 3 4924 259 111 52 chr1 247250081 247251325 -34942339 - L2 LINE L2 -1002 2311 865 483 296 53 6 chr1 247251523 247251692 -34941972 + MIR SINE MIR 36 212 -50 348 260 19 39 chr1 247252076 247252180 -34941484 - MIR SINE MIR -111 151 50 407 282 66 6 chr1 247252591 247252772 -34940892 - MLT1G1 LTR MaLR -9 533 342 752 237 32 87 chr1 247252842 247253139 -34940525 - MLT1G1 LTR MaLR -300 295 14 1333 244 56 3 chr1 247253139 247253426 -34940238 + AluJo SINE Alu 1 302 0 752 237 32 87 chr1 247253426 247253440 -34940224 - MLT1G1 LTR MaLR -581 14 1 579 298 154 25 chr1 247253514 247253917 -34939747 + L2 LINE L2 2818 3272 0 546 244 80 34 chr1 247254392 247254568 -34939096 + MER5A DNA MER1_type 6 189 0 227 133 22 0 chr1 247254819 247254864 -34938800 + (CA)n Simple_repeat Simple_repeat 1 46 0 533 193 55 133 chr1 247255405 247255623 -34938041 + L1ME3 LINE L1 5962 6162 0 357 318 67 28 chr1 247256878 247257057 -34936607 + MIR SINE MIR 63 248 -14 187 250 0 0 chr1 247257056 247257096 -34936568 + L2 LINE L2 2930 2969 -344 * 2354 94 7 0 chr1 247257096 247257405 -34936259 - AluSx SINE Alu -1 311 1 536 263 83 37 chr1 247257431 247257648 -34936016 + L2 LINE L2 3082 3308 -5 935 167 28 6 chr1 247257799 247257979 -34935685 + MER53 DNA DNA 2 185 -4 920 231 20 10 chr1 247258097 247258172 -34935492 + MER63A DNA MER1_type 1 74 -1614 1808 141 10 26 chr1 247258172 247258477 -34935187 - AluSx SINE Alu 0 312 13 920 231 20 10 chr1 247258477 247258600 -34935064 + MER63A DNA MER1_type 74 201 -9 396 0 0 0 chr1 247259009 247259053 -34934611 + (TG)n Simple_repeat Simple_repeat 1 44 0 249 287 115 16 chr1 247259452 247259574 -34934090 + MIR3 SINE MIR 65 198 -10 180 0 0 0 chr1 247259729 247259749 -34933915 + (TC)n Simple_repeat Simple_repeat 2 21 0 1146 147 143 39 chr1 247260943 247261035 -34932629 + MER33 DNA MER1_type 5 86 -2499 2233 69 0 0 chr1 247261035 247261311 -34932353 + AluY SINE Alu 21 296 -15 1146 147 143 39 chr1 247261311 247261504 -34932160 + MER33 DNA MER1_type 86 320 -4 24 32 0 0 chr1 247261702 247261733 -34931931 + AT_rich Low_complexity Low_complexity 1 31 0 2090 91 0 7 chr1 247261733 247262008 -34931656 - L1PB1 LINE L1 -5 6146 5874 331 205 80 27 chr1 247262281 247262393 -34931271 - L1ME4a LINE L1 -13 6108 5991 727 265 69 29 chr1 247262428 247262673 -34930991 - MIR SINE MIR 0 262 8 3112 247 46 75 chr1 247262818 247264271 -34929393 - L2 LINE L2 0 3313 1901 1283 289 40 49 chr1 247265696 247266436 -34927228 - L2 LINE L2 0 3313 2580 278 340 83 32 chr1 247266428 247266584 -34927080 + MER5A DNA MER1_type 25 188 -1 * 2015 178 30 181 chr1 247266593 247267491 -34926173 + LTR41 LTR ERVL 1 762 -11 590 265 61 20 chr1 247267931 247268127 -34925537 + MIR SINE MIR 4 207 -55 998 245 40 52 chr1 247268429 247268458 -34925206 - MER33 DNA MER1_type -2262 323 295 2116 124 0 0 chr1 247268458 247268766 -34924898 + AluSx SINE Alu 1 308 0 998 245 40 52 chr1 247268766 247269062 -34924602 - MER33 DNA MER1_type -2290 295 1 364 336 14 36 chr1 247269066 247269206 -34924458 - MIR3 SINE MIR -43 165 29 * 593 263 113 5 chr1 247269200 247269386 -34924278 + MIR SINE MIR 45 250 -12 594 221 58 13 chr1 247270393 247270547 -34923117 + L1PB4 LINE L1 5960 6120 -36 816 117 0 0 chr1 247271182 247271293 -34922371 + AluSg/x SINE Alu 168 278 -32 279 270 95 48 chr1 247272882 247273008 -34920656 + L2 LINE L2 3182 3313 0 181 304 51 25 chr1 247273605 247273684 -34919980 + L3 LINE CR1 1094 1174 -403 603 265 40 67 chr1 247274608 247274791 -34918873 + MIR SINE MIR 14 190 -72 1773 155 38 14 chr1 247274791 247275082 -34918582 + AluJb SINE Alu 1 298 -14 603 265 40 67 chr1 247275082 247275151 -34918513 + MIR SINE MIR 190 259 -3 704 207 171 0 chr1 247275170 247275363 -34918301 - MIR SINE MIR -5 257 32 189 267 100 11 chr1 247276449 247276539 -34917125 + MIR SINE MIR 34 131 -77 297 75 0 0 chr1 247276582 247276622 -34917042 + (ATG)n Simple_repeat Simple_repeat 1 40 0 250 229 14 14 chr1 247276661 247276731 -34916933 - MIR SINE MIR -14 248 179 1353 272 105 37 chr1 247276799 247277343 -34916321 + MLT1G1 LTR MaLR 1 581 -14 1038 258 24 57 chr1 247277408 247277706 -34915958 - MER115 DNA AcHobo -11 682 395 328 287 164 0 chr1 247277984 247278106 -34915558 - MER115 DNA AcHobo -441 252 111 405 0 0 0 chr1 247279603 247279648 -34914016 + (A)n Simple_repeat Simple_repeat 1 45 0 27 29 0 0 chr1 247279810 247279844 -34913820 + AT_rich Low_complexity Low_complexity 1 34 0 605 101 0 0 chr1 247282835 247282914 -34910750 - AluS SINE Alu -222 90 12 187 341 47 0 chr1 247283205 247283290 -34910374 + L3 LINE CR1 1289 1377 -200 520 276 86 30 chr1 247283944 247284176 -34909488 + MIR SINE MIR 17 261 -1 6117 37 0 0 chr1 247284395 247285602 -34908062 + L1PA4 LINE L1 4768 5974 -181 7749 31 0 3 chr1 247285702 247286879 -34906785 - L1P2 LINE L1 -498 5657 4484 1591 155 0 36 chr1 247286979 247287257 -34906407 + L1M3 LINE L1 5297 5564 -619 * 5419 157 13 7 chr1 247287251 247288202 -34905462 + L1P LINE L1 3765 4720 -1426 539 315 69 77 chr1 247288339 247289285 -34904379 - L1 LINE L1 -2889 3257 2320 2106 127 14 0 chr1 247289391 247289675 -34903989 - AluSx SINE Alu -24 288 1 6609 178 12 1 chr1 247289819 247291017 -34902647 + L1P LINE L1 1441 2651 -3495 6479 40 1 3 chr1 247291117 247291897 -34901767 + L1PA5 LINE L1 5372 6150 -4 225 94 0 0 chr1 247291900 247291932 -34901732 + (A)n Simple_repeat Simple_repeat 1 32 0 202 330 17 0 chr1 247292149 247292214 -34901450 - MIR SINE MIR -103 105 40 467 296 100 17 chr1 247292388 247292628 -34901036 + MIR SINE MIR 2 261 -1 2443 69 13 3 chr1 247292676 247292979 -34900685 - AluSp SINE Alu -7 306 1 1218 167 145 37 chr1 247293114 247293383 -34900281 - AluJb SINE Alu -14 298 1 43 81 0 0 chr1 247294353 247294452 -34899212 + GC_rich Low_complexity Low_complexity 1 99 0 22 0 0 0 chr1 247294572 247294594 -34899070 + GC_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr1 247295259 247295289 -34898375 + (CA)n Simple_repeat Simple_repeat 2 31 0 867 95 0 26 chr1 247297353 247297469 -34896195 - AluSq/x SINE Alu -200 113 1 22 0 0 0 chr1 247297504 247297526 -34896138 + AT_rich Low_complexity Low_complexity 1 22 0 1237 95 6 0 chr1 247297696 247297854 -34895810 + AluSg SINE Alu 24 182 -128 300 85 0 34 chr1 247297854 247297913 -34895751 + AluSg/q SINE Alu 247 303 0 559 244 8 0 chr1 247299784 247299915 -34893749 + MER2 DNA MER2_type 33 164 -181 282 110 4 0 chr1 247300290 247300337 -34893327 + Alu SINE Alu 239 277 -25 * 728 228 53 11 chr1 247300333 247300522 -34893142 + MER21B LTR ERV1 613 809 -54 586 284 87 47 chr1 247300556 247301203 -34892461 + L1MC4a LINE L1 5356 6035 -86 5332 195 38 34 chr1 247302699 247304709 -34888955 + MER21B-int LTR ERV1 2013 4122 -69 1947 226 44 59 chr1 247304809 247305398 -34888266 + MER21B LTR ERV1 12 591 -272 602 183 40 0 chr1 247305422 247305548 -34888116 + FLAM_C SINE Alu 2 132 -1 250 200 53 13 chr1 247306108 247306183 -34887481 - MER116 DNA Mariner -1 79 2 2045 147 7 0 chr1 247308167 247308473 -34885191 - AluJb SINE Alu -4 308 1 668 253 20 0 chr1 247308797 247308947 -34884717 - MER21B-int LTR ERV1 -2394 1797 1645 6849 223 20 39 chr1 247309120 247309317 -34884347 - MER21B-int LTR ERV1 -2614 1577 1378 2059 119 32 69 chr1 247309317 247309694 -34883970 + THE1B LTR MaLR 1 363 -1 6849 223 20 39 chr1 247309694 247309784 -34883880 - MER21B-int LTR ERV1 -2813 1378 1288 2313 116 0 0 chr1 247309784 247310087 -34883577 - AluSx SINE Alu -9 303 1 6849 223 20 39 chr1 247310087 247311404 -34882260 - MER21B-int LTR ERV1 -2903 1288 2 2385 239 37 65 chr1 247311455 247312171 -34881493 - MER21B LTR ERV1 -51 812 117 2594 50 0 0 chr1 247312171 247312468 -34881196 + AluY SINE Alu 1 297 -14 2385 239 37 65 chr1 247312468 247312526 -34881138 - MER21B LTR ERV1 -746 117 59 287 250 130 0 chr1 247312585 247312693 -34880971 - L1 LINE L1 -863 5283 5162 546 163 71 0 chr1 247316239 247316380 -34877284 - AluSc SINE Alu -4 305 155 393 263 0 45 chr1 247316887 247317020 -34876644 + L2 LINE L2 3184 3310 -3 1343 231 123 33 chr1 247317959 247318413 -34875251 + MLT1D LTR MaLR 9 503 -2 1886 165 0 3 chr1 247318564 247318861 -34874803 + AluJb SINE Alu 1 296 -16 1897 151 7 3 chr1 247318863 247319162 -34874502 + AluSc SINE Alu 1 300 -9 5765 71 63 20 chr1 247319330 247320122 -34873542 + LTR12 LTR ERV1 1 826 0 278 294 105 34 chr1 247320337 247320575 -34873089 - L2 LINE L2 -590 2724 2470 343 224 26 78 chr1 247321093 247321209 -34872455 - MIR3 SINE MIR -15 193 84 207 194 0 113 chr1 247321362 247321424 -34872240 + MIR3 SINE MIR 111 165 -43 180 152 0 0 chr1 247323068 247323101 -34870563 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2181 74 84 0 chr1 247323135 247323420 -34870244 - AluSp SINE Alu -4 309 1 1735 81 206 12 chr1 247323452 247323700 -34869964 - AluSx SINE Alu -16 296 1 2046 164 18 3 chr1 247324591 247324927 -34868737 - MER7A DNA MER2_type -5 341 3 379 285 7 36 chr1 247324947 247325084 -34868580 + MIR SINE MIR 21 153 -109 1204 161 33 40 chr1 247325095 247325369 -34868295 + AluJo SINE Alu 26 297 -15 1778 124 102 28 chr1 247325374 247325657 -34868007 + AluSx SINE Alu 1 304 -8 1097 111 136 0 chr1 247325741 247325903 -34867761 - AluSg/x SINE Alu -13 297 114 2367 99 0 3 chr1 247327293 247327605 -34866059 + AluSx SINE Alu 1 311 -1 217 262 16 0 chr1 247327758 247327819 -34865845 - MIR SINE MIR -62 146 85 216 0 0 0 chr1 247327877 247327901 -34865763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1146 138 17 0 chr1 247328297 247328471 -34865193 - AluSc SINE Alu -1 308 132 1462 170 12 8 chr1 247328471 247328724 -34864940 - AluSx SINE Alu -11 301 48 439 264 97 0 chr1 247329735 247329879 -34863785 - MIR SINE MIR -1 261 104 1374 165 101 49 chr1 247331937 247332265 -34861399 - MER46B DNA MER2_type -12 224 5 221 269 15 0 chr1 247332607 247332674 -34860990 + MER5A DNA MER1_type 9 76 -113 229 270 40 0 chr1 247333992 247334066 -34859598 + MIR SINE MIR 78 154 -108 4239 199 52 47 chr1 247334655 247335932 -34857732 - L1MD2 LINE L1 -23 6336 4999 2272 111 0 10 chr1 247335932 247336230 -34857434 + AluSc SINE Alu 1 295 -14 4239 199 52 47 chr1 247336230 247336474 -34857190 - L1MD2 LINE L1 -1360 4999 4758 234 0 0 0 chr1 247337667 247337693 -34855971 + (T)n Simple_repeat Simple_repeat 1 26 0 796 235 48 9 chr1 247338798 247339028 -34854636 + MIR SINE MIR 2 240 -22 1788 160 36 0 chr1 247340487 247340768 -34852896 - AluSx SINE Alu -21 291 1 195 343 29 19 chr1 247340878 247340983 -34852681 + L2 LINE L2 2682 2787 -527 651 293 39 19 chr1 247340983 247341191 -34852473 + MIR SINE MIR 1 212 -50 467 344 148 33 chr1 247341264 247341657 -34852007 + L2 LINE L2 2818 3255 -17 429 189 40 23 chr1 247341922 247342035 -34851629 - MER45A DNA AcHobo -49 129 3 856 182 39 0 chr1 247342497 247342678 -34850986 - L1MA6 LINE L1 -81 6219 6032 33 0 0 0 chr1 247342682 247342715 -34850949 + AT_rich Low_complexity Low_complexity 1 33 0 512 293 35 11 chr1 247342827 247343001 -34850663 + MER5B DNA MER1_type 1 178 0 2119 126 7 0 chr1 247343006 247343308 -34850356 + AluSx SINE Alu 1 304 -8 347 309 19 19 chr1 247345048 247345210 -34848454 + L1ME3A LINE L1 6009 6170 0 4548 51 33 0 chr1 247345501 247346073 -34847591 - LTR10C LTR ERV1 0 591 1 2231 93 10 20 chr1 247347154 247347456 -34846208 + AluSp SINE Alu 1 299 -14 191 286 0 0 chr1 247348840 247348882 -34844782 - L2 LINE L2 -92 3180 3139 2308 109 0 3 chr1 247349007 247349310 -34844354 - AluSq SINE Alu -11 302 1 312 315 48 30 chr1 247349509 247349674 -34843990 - L1M4 LINE L1 -986 5160 4993 185 313 0 0 chr1 247349840 247349888 -34843776 - MIR SINE MIR -158 104 57 531 313 40 6 chr1 247349939 247350115 -34843549 - MIR3 SINE MIR -11 197 16 4977 185 33 24 chr1 247350472 247350683 -34842981 + L1MC3 LINE L1 6658 6866 -919 198 0 0 0 chr1 247350683 247350705 -34842959 + (CA)n Simple_repeat Simple_repeat 1 22 0 4977 185 33 24 chr1 247350705 247351133 -34842531 + L1MC3 LINE L1 6866 7289 -496 2265 98 3 28 chr1 247351133 247351451 -34842213 + AluSx SINE Alu 1 310 -2 4977 185 33 24 chr1 247351451 247351927 -34841737 + L1MC3 LINE L1 7289 7784 -1 219 327 103 0 chr1 247352101 247352208 -34841456 + L2 LINE L2 3118 3235 -37 3559 171 21 24 chr1 247352366 247353118 -34840546 + L1MB3 LINE L1 5433 6182 -1 621 254 168 10 chr1 247353527 247353736 -34839928 + MIR SINE MIR 1 242 -20 301 278 218 8 chr1 247354293 247354426 -34839238 - L2 LINE L2 -1 3312 3152 1964 141 28 3 chr1 247354463 247354754 -34838910 + AluSg SINE Alu 1 298 -12 353 342 111 0 chr1 247358083 247358273 -34835391 - MIR SINE MIR -1 261 51 3022 237 74 92 chr1 247359018 247360809 -34832855 + HAL1 LINE L1 7 1764 -743 584 93 21 10 chr1 247360809 247360906 -34832758 + MER4A LTR ERV1 1 98 -566 1605 105 193 77 chr1 247360906 247361268 -34832396 + MER4A LTR ERV1 261 664 0 1508 289 70 13 chr1 247361276 247361974 -34831690 + HAL1 LINE L1 1770 2507 0 340 264 27 0 chr1 247362084 247362194 -34831470 - MER112 DNA MER1_type -7 253 141 327 280 86 43 chr1 247362396 247362628 -34831036 + MLT1J LTR MaLR 237 478 -33 435 163 88 100 chr1 247362659 247362819 -34830845 - MER112 DNA MER1_type -101 159 2 294 297 85 17 chr1 247362911 247363029 -34830635 + MIR3 SINE MIR 73 198 -10 205 271 50 86 chr1 247363270 247363410 -34830254 + L3b LINE CR1 1111 1245 -338 2377 77 3 0 chr1 247363490 247363788 -34829876 - AluSp SINE Alu -14 299 1 328 236 120 42 chr1 247363978 247364219 -34829445 + MER112 DNA MER1_type 1 260 0 2174 100 0 27 chr1 247364491 247364790 -34828874 + AluSg SINE Alu 6 296 -14 27 29 0 0 chr1 247366297 247366331 -34827333 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr1 247366493 247366518 -34827146 + (T)n Simple_repeat Simple_repeat 1 25 0 330 296 17 81 chr1 247366519 247366691 -34826973 + MER5B DNA MER1_type 1 161 -17 322 286 211 23 chr1 247367621 247367754 -34825910 + MIR SINE MIR 24 181 -81 268 331 91 11 chr1 247368248 247368423 -34825241 + MIR3 SINE MIR 10 198 -10 195 100 0 0 chr1 247368710 247368740 -34824924 + (TC)n Simple_repeat Simple_repeat 1 30 0 386 254 8 16 chr1 247369600 247369722 -34823942 - MER103 DNA DNA -45 121 1 1582 166 132 3 chr1 247370862 247371188 -34822476 - MSTB LTR MaLR -58 368 1 609 229 0 0 chr1 247371533 247371651 -34822013 + MIR SINE MIR 37 154 -108 983 165 112 0 chr1 247371652 247371858 -34821806 + MER50 LTR ERV1 1 229 -505 * 1336 150 94 39 chr1 247371852 247372138 -34821526 + MER50 LTR ERV1 433 734 0 240 167 37 0 chr1 247372168 247372222 -34821442 + MIR SINE MIR 147 202 -60 297 263 140 26 chr1 247372244 247372358 -34821306 - MIR SINE MIR -70 192 66 923 102 41 186 chr1 247372383 247372678 -34820986 + L1MA7 LINE L1 6036 6287 -4 5116 196 90 61 chr1 247372737 247374295 -34819369 - Zaphod DNA AcHobo -6 4025 2407 2173 106 7 7 chr1 247374295 247374596 -34819068 - AluSg1 SINE Alu -4 305 5 5116 196 90 61 chr1 247374596 247374846 -34818818 - Zaphod DNA AcHobo -1624 2407 2166 344 244 27 158 chr1 247374864 247375200 -34818464 - MLT1I LTR MaLR -20 389 98 348 134 0 0 chr1 247377062 247377129 -34816535 - Zaphod DNA AcHobo -1868 2163 2097 1322 174 130 22 chr1 247377154 247377430 -34816234 - AluJo SINE Alu -6 306 1 278 316 0 0 chr1 247377540 247377616 -34816048 - MER5C DNA MER1_type -236 88 13 426 218 82 0 chr1 247378766 247378876 -34814788 + MER94 DNA DNA 1 119 -15 399 280 54 32 chr1 247378943 247379129 -34814535 + MLT1H LTR MaLR 79 268 -281 231 255 216 0 chr1 247379175 247379277 -34814387 + MLT1H LTR MaLR 421 544 -5 200 256 0 51 chr1 247380517 247380595 -34813069 + MIR SINE MIR 20 93 -169 1951 299 82 21 chr1 247380605 247381978 -34811686 + L1MEc LINE L1 213 1668 -4728 649 273 65 0 chr1 247381991 247382284 -34811380 + L1MEc LINE L1 1768 2079 -4317 1256 186 9 0 chr1 247382293 247382514 -34811150 + AluJb SINE Alu 86 308 -4 965 269 33 14 chr1 247382516 247382936 -34810728 + L1MEc LINE L1 2087 2514 -3882 765 335 161 18 chr1 247382973 247383581 -34810083 - L2 LINE L2 -452 2862 2168 2136 125 20 0 chr1 247383718 247384022 -34809642 - AluSg SINE Alu 0 310 1 641 279 59 21 chr1 247384032 247384372 -34809292 + L1MEc LINE L1 1316 1668 -4728 887 343 64 11 chr1 247384373 247384921 -34808743 + L1M4 LINE L1 4664 5240 -906 208 262 63 79 chr1 247385038 247385164 -34808500 + L2 LINE L2 2981 3104 -168 2119 44 0 8 chr1 247385183 247385435 -34808229 - AluY SINE Alu -60 251 2 804 296 152 28 chr1 247385664 247386053 -34807611 + L2 LINE L2 2875 3311 -2 354 271 33 166 chr1 247386304 247386702 -34806962 - L2 LINE L2 -405 2909 2565 25 0 0 0 chr1 247388001 247388026 -34805638 + AT_rich Low_complexity Low_complexity 1 25 0 218 102 17 51 chr1 247388906 247388965 -34804699 + (CA)n Simple_repeat Simple_repeat 2 58 0 377 276 13 50 chr1 247389505 247389671 -34803993 + MIR SINE MIR 33 190 -63 1043 269 87 9 chr1 247389724 247390047 -34803617 - LTR16A LTR ERVL -17 433 86 330 347 41 0 chr1 247390801 247390899 -34802765 - L2 LINE L2 -1 3271 3170 2142 140 14 0 chr1 247391079 247391444 -34802220 - L1MA5 LINE L1 -5 6295 5926 312 299 21 42 chr1 247391651 247391795 -34801869 - MIR SINE MIR -46 216 76 1620 168 3 91 chr1 247392666 247393005 -34800659 + AluJo SINE Alu 1 309 -3 718 117 0 0 chr1 247393351 247393454 -34800210 + L1MB2 LINE L1 6064 6166 -5 1790 161 7 17 chr1 247396178 247396476 -34797188 + AluJb SINE Alu 1 295 -17 2480 187 16 50 chr1 247396528 247397085 -34796579 + MER67A LTR ERV1 6 543 0 2534 67 0 6 chr1 247397992 247398304 -34795360 + AluY SINE Alu 1 310 -1 186 43 0 0 chr1 247398759 247398782 -34794882 + (TAA)n Simple_repeat Simple_repeat 1 23 0 461 302 109 5 chr1 247398783 247398975 -34794689 - MIR SINE MIR -2 260 49 1749 174 0 3 chr1 247398993 247399280 -34794384 + AluJb SINE Alu 19 304 -8 1491 146 7 46 chr1 247400077 247400357 -34793307 + AluJo SINE Alu 39 307 -5 956 217 149 5 chr1 247400368 247400589 -34793075 + Tigger7 DNA MER2_type 1 253 -480 183 146 195 0 chr1 247401169 247401210 -34792454 - L2 LINE L2 -16 3256 3208 1523 148 4 37 chr1 247401754 247401998 -34791666 + MER46A DNA MER2_type 1 236 0 317 293 53 27 chr1 247402220 247402370 -34791294 + MIR SINE MIR 20 173 -89 5165 153 40 14 chr1 247402409 247403353 -34790311 + L1MA7 LINE L1 5321 6289 -2 415 296 28 51 chr1 247403608 247403784 -34789880 + MER5B DNA MER1_type 2 173 -5 2665 124 3 3 chr1 247404876 247405240 -34788424 - THE1B LTR MaLR 0 364 1 399 265 171 0 chr1 247405282 247405399 -34788265 + L2 LINE L2 3136 3272 0 294 279 196 12 chr1 247406871 247407016 -34786648 + MIR SINE MIR 17 187 -75 218 267 80 13 chr1 247407047 247407122 -34786542 + MIR3 SINE MIR 121 200 -8 1858 153 0 35 chr1 247407296 247407610 -34786054 - AluJo SINE Alu -9 303 1 852 280 127 42 chr1 247407757 247408160 -34785504 + MLT1J2 LTR MaLR 11 447 -3 201 74 0 0 chr1 247408967 247408994 -34784670 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 679 252 7 0 chr1 247409154 247409301 -34784363 - MER69 DNA AcHobo -1077 149 2 24 0 0 0 chr1 247411362 247411386 -34782278 + AT_rich Low_complexity Low_complexity 1 24 0 211 363 62 0 chr1 247411701 247411781 -34781883 + L2 LINE L2 3146 3230 -42 222 191 0 0 chr1 247411781 247411828 -34781836 + (ATGGTG)n Simple_repeat Simple_repeat 1 47 0 307 213 0 38 chr1 247411828 247411908 -34781756 - MIR SINE MIR -1 261 185 226 140 18 35 chr1 247411919 247411976 -34781688 + (TA)n Simple_repeat Simple_repeat 1 56 0 554 166 17 154 chr1 247411976 247412171 -34781493 - MIR SINE MIR -57 205 40 327 314 155 5 chr1 247412451 247412645 -34781019 - MIR SINE MIR -38 224 2 207 327 227 0 chr1 247413599 247413709 -34779955 + L2 LINE L2 3127 3261 -11 181 232 24 85 chr1 247414311 247414393 -34779271 + MIR SINE MIR 125 201 -61 * 208 327 40 79 chr1 247414387 247414589 -34779075 - L2 LINE L2 0 3272 3079 611 332 26 4 chr1 247414795 247415021 -34778643 - MIR SINE MIR 0 262 32 468 0 0 0 chr1 247415297 247415349 -34778315 + (CA)n Simple_repeat Simple_repeat 1 52 0 263 222 67 113 chr1 247415988 247416322 -34777342 + L1P5 LINE L1 5111 5431 -723 591 286 80 37 chr1 247416454 247416803 -34776861 + L2 LINE L2 2141 2504 -810 492 278 194 7 chr1 247416824 247417097 -34776567 + L2 LINE L2 2990 3313 0 348 232 144 8 chr1 247417198 247417323 -34776341 + MIR SINE MIR 118 259 -3 347 248 18 9 chr1 247417342 247417451 -34776213 + L1MC4a LINE L1 5804 5913 -1895 397 279 29 0 chr1 247418040 247418144 -34775520 - L2 LINE L2 -2 3311 3205 198 0 0 0 chr1 247419177 247419199 -34774465 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 850 149 8 8 chr1 247419350 247419484 -34774180 - AluJo SINE Alu -178 134 1 22 0 0 0 chr1 247419634 247419656 -34774008 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr1 247420515 247420540 -34773124 + (TA)n Simple_repeat Simple_repeat 2 26 0 3146 226 142 26 chr1 247420613 247421708 -34771956 + HAL1 LINE L1 1280 2500 -7 737 206 162 31 chr1 247421793 247422021 -34771643 + MIR SINE MIR 5 262 0 353 198 10 79 chr1 247422091 247422192 -34771472 + L2 LINE L2 3179 3272 0 298 153 69 42 chr1 247422320 247422392 -34771272 + MLT1J LTR MaLR 42 115 -396 2371 101 0 0 chr1 247422416 247422723 -34770941 - AluY SINE Alu -4 307 1 2131 125 0 0 chr1 247423111 247423392 -34770272 + AluSp SINE Alu 16 296 -17 550 286 108 9 chr1 247423780 247424011 -34769653 - Charlie8 DNA MER1_type -2153 264 11 480 282 57 53 chr1 247424060 247424132 -34769532 - MIR SINE MIR -6 256 186 935 94 78 0 chr1 247424132 247424260 -34769404 - MER85 DNA T2_type -1 138 1 480 282 57 53 chr1 247424260 247424432 -34769232 - MIR SINE MIR -76 186 11 384 158 121 127 chr1 247424457 247424570 -34769094 + MER5B DNA MER1_type 1 114 -64 1782 160 17 3 chr1 247424570 247424864 -34768800 - AluJb SINE Alu -13 299 2 384 158 121 127 chr1 247424864 247424915 -34768749 + MER5B DNA MER1_type 114 164 -14 437 193 160 100 chr1 247424927 247424967 -34768697 + MER5A DNA MER1_type 31 67 -122 2187 136 7 0 chr1 247424967 247425277 -34768387 + AluSx SINE Alu 1 312 0 437 193 160 100 chr1 247425277 247425386 -34768278 + MER5A DNA MER1_type 67 189 0 2234 80 47 0 chr1 247426868 247427167 -34766497 + AluSp SINE Alu 1 313 0 1938 167 0 3 chr1 247427332 247427626 -34766038 + AluJo SINE Alu 1 293 -19 508 173 0 0 chr1 247427832 247427913 -34765751 - Tigger5 DNA MER2_type -1 2322 2242 362 183 42 14 chr1 247427903 247427974 -34765690 + Tigger5 DNA MER2_type 2242 2314 -9 * 449 200 0 0 chr1 247427973 247428048 -34765616 - Tigger5 DNA MER2_type -2248 75 1 520 265 48 72 chr1 247428149 247428440 -34765224 - HAL1 LINE L1 -1189 1318 1035 207 265 96 84 chr1 247428806 247428972 -34764692 + MIR SINE MIR 32 199 -63 227 143 20 20 chr1 247429261 247429310 -34764354 + GA-rich Low_complexity Low_complexity 5 53 0 362 245 19 88 chr1 247429379 247429538 -34764126 - MER57A LTR ERV1 -4 399 252 * 1241 151 66 8 chr1 247429521 247429818 -34763846 - LTR54 LTR ERV1 -135 375 1 466 268 49 18 chr1 247429823 247429987 -34763677 + MIR SINE MIR 82 250 -12 275 298 87 19 chr1 247430429 247430533 -34763131 - L2 LINE L2 -11 3261 3151 364 298 66 33 chr1 247431735 247431916 -34761748 + MIR SINE MIR 74 260 -2 240 250 25 25 chr1 247431928 247432008 -34761656 - MIR SINE MIR -109 99 20 417 353 44 42 chr1 247432388 247432732 -34760932 + L2 LINE L2 2722 3064 -208 401 276 89 33 chr1 247432852 247433036 -34760628 + MIR3 SINE MIR 7 199 -9 23 54 0 0 chr1 247433153 247433190 -34760474 + AT_rich Low_complexity Low_complexity 1 37 0 2209 103 0 0 chr1 247433304 247433595 -34760069 + AluY SINE Alu 1 291 -20 1639 165 109 72 chr1 247434300 247434676 -34758988 + MLT1B LTR MaLR 1 390 0 1954 142 29 6 chr1 247436132 247436448 -34757216 - L1MB1 LINE L1 -1 6167 5845 22 0 0 0 chr1 247436858 247436880 -34756784 + AT_rich Low_complexity Low_complexity 1 22 0 594 219 0 55 chr1 247437114 247437242 -34756422 + FLAM_A SINE Alu 1 121 -12 374 264 230 0 chr1 247437689 247437863 -34755801 - MIR SINE MIR 0 262 49 802 211 47 6 chr1 247437893 247438064 -34755600 + Charlie1 DNA MER1_type 56 233 -2528 261 215 0 0 chr1 247438053 247438118 -34755546 + Charlie1 DNA MER1_type 2619 2683 -78 * 1978 158 21 13 chr1 247438118 247438498 -34755166 - L1PA13 LINE L1 -813 5333 4951 5383 111 8 12 chr1 247438508 247439313 -34754351 + L1PA13 LINE L1 5356 6156 -7 436 66 0 105 chr1 247439363 247439439 -34754225 + L1PA8 LINE L1 6096 6163 -9 1343 183 0 4 chr1 247439706 247439935 -34753729 - AluSx SINE Alu -13 297 70 486 111 14 14 chr1 247439992 247440064 -34753600 - AluSx SINE Alu -236 77 6 316 119 34 34 chr1 247440065 247440124 -34753540 + Charlie1 DNA MER1_type 2701 2759 -2 2068 116 13 3 chr1 247440211 247440514 -34753150 + AluSq SINE Alu 1 306 -7 400 208 143 131 chr1 247440759 247441004 -34752660 + MIR SINE MIR 15 262 0 215 318 100 9 chr1 247441285 247441395 -34752269 + MIR3 SINE MIR 84 203 -5 285 244 9 26 chr1 247442179 247442294 -34751370 + (TA)n Simple_repeat Simple_repeat 2 114 0 203 171 0 0 chr1 247442546 247442581 -34751083 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2628 134 86 0 chr1 247443295 247443689 -34749975 + MSTA LTR MaLR 1 428 0 369 261 35 118 chr1 247444009 247444212 -34749452 - MER5A DNA MER1_type -3 186 1 1792 103 43 4 chr1 247444231 247444508 -34749156 - AluSx SINE Alu 0 307 21 309 26 0 0 chr1 247444637 247444675 -34748989 + (TG)n Simple_repeat Simple_repeat 2 39 0 358 215 25 0 chr1 247445175 247445254 -34748410 + L2 LINE L2 3233 3313 0 1949 118 3 3 chr1 247445338 247445625 -34748039 - AluSc SINE Alu -22 287 1 330 87 0 0 chr1 247446109 247446155 -34747509 + (CA)n Simple_repeat Simple_repeat 2 47 0 2038 122 31 0 chr1 247446326 247446620 -34747044 - AluSx SINE Alu -9 303 1 3242 82 18 38 chr1 247447256 247447709 -34745955 - MLT2A1 LTR ERVL 0 444 1 222 208 0 0 chr1 247447716 247447764 -34745900 + T-rich Low_complexity Low_complexity 1 48 0 202 238 0 0 chr1 247447903 247447945 -34745719 - L3 LINE CR1 -7 1570 1529 213 239 120 22 chr1 247447972 247448064 -34745600 - MER5A DNA MER1_type -63 126 26 225 293 13 13 chr1 247448075 247448150 -34745514 - MIR3 SINE MIR -48 160 86 239 347 61 0 chr1 247448181 247448279 -34745385 - L2 LINE L2 -1 3271 3168 204 289 13 92 chr1 247452441 247452517 -34741147 - MER5B DNA MER1_type -108 70 1 430 288 159 12 chr1 247453447 247453617 -34740047 - MIR3 SINE MIR -11 197 3 320 283 136 20 chr1 247454218 247454469 -34739195 - HAL1 LINE L1 -7 2500 2221 1320 182 96 28 chr1 247454508 247454799 -34738865 - MER2 DNA MER2_type -25 320 10 331 230 90 0 chr1 247454859 247454959 -34738705 - HAL1 LINE L1 -292 2215 2107 2231 253 77 15 chr1 247454971 247455648 -34738016 + HsTC2c DNA Tc2 11 729 0 262 103 0 0 chr1 247455651 247455690 -34737974 - U2 snRNA snRNA -149 39 1 3591 228 98 129 chr1 247455693 247456618 -34737046 - HAL1 LINE L1 -402 2105 1153 1444 126 0 10 chr1 247456618 247456824 -34736840 - AluJb SINE Alu -24 288 85 3591 228 98 129 chr1 247456824 247457058 -34736606 - HAL1 LINE L1 -1354 1153 913 2177 120 0 7 chr1 247457058 247457358 -34736306 - AluSg SINE Alu -12 298 1 3591 228 98 129 chr1 247457358 247457466 -34736198 - HAL1 LINE L1 -1594 913 803 2343 107 0 3 chr1 247457466 247457776 -34735888 - AluSx SINE Alu -3 309 1 3591 228 98 129 chr1 247457776 247458471 -34735193 - HAL1 LINE L1 -1704 803 4 279 0 0 0 chr1 247459713 247459744 -34733920 + (TG)n Simple_repeat Simple_repeat 2 32 0 3030 238 106 21 chr1 247460253 247461323 -34732341 + L2 LINE L2 2121 3295 -18 1185 256 70 29 chr1 247461702 247462187 -34731477 - L1MC4 LINE L1 0 8042 7538 630 293 133 9 chr1 247462280 247462505 -34731159 + MIR SINE MIR 4 256 -6 1126 232 8 38 chr1 247463455 247463722 -34729942 + MIR SINE MIR 3 261 -1 489 210 0 20 chr1 247464724 247464824 -34728840 + MIR SINE MIR 2 99 -163 336 240 57 80 chr1 247465044 247465219 -34728445 + LTR16A1 LTR ERVL 277 447 -10 277 238 95 48 chr1 247465224 247465329 -34728335 + MIR SINE MIR 153 262 0 21 0 0 0 chr1 247465638 247465659 -34728005 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 247466439 247466469 -34727195 + AT_rich Low_complexity Low_complexity 1 30 0 339 259 0 12 chr1 247467150 247467231 -34726433 + MER103 DNA DNA 2 81 -85 910 118 7 29 chr1 247467231 247467367 -34726297 + FLAM_C SINE Alu 1 133 0 186 222 19 56 chr1 247467402 247467456 -34726208 + L2 LINE L2 3262 3313 0 360 267 129 42 chr1 247467527 247467684 -34725980 + L1ME4a LINE L1 5665 5807 -314 2216 100 0 0 chr1 247467684 247467992 -34725672 - AluSc SINE Alu 0 308 1 360 267 129 42 chr1 247467992 247468237 -34725427 + L1ME4a LINE L1 5807 6103 -18 2132 114 7 0 chr1 247468279 247468569 -34725095 + AluSx SINE Alu 1 292 -20 638 261 111 33 chr1 247469183 247469516 -34724148 + L1ME4a LINE L1 5594 5952 -169 2274 102 0 0 chr1 247470171 247470475 -34723189 + AluSq SINE Alu 1 304 -9 424 213 43 0 chr1 247470889 247470983 -34722681 + MER113 DNA MER1_type? 5 102 -419 623 183 67 8 chr1 247471354 247471474 -34722190 - L2 LINE L2 0 3313 3187 1913 90 0 0 chr1 247471684 247471929 -34721735 - L1PA14 LINE L1 -3 6158 5914 22 0 0 0 chr1 247473806 247473828 -34719836 + AT_rich Low_complexity Low_complexity 1 22 0 881 176 14 0 chr1 247473832 247473980 -34719684 - FRAM SINE Alu -24 152 3 328 277 139 22 chr1 247474001 247474138 -34719526 + MIR SINE MIR 1 153 -109 335 234 266 6 chr1 247474138 247474296 -34719368 + MIR SINE MIR 64 262 0 2225 94 3 3 chr1 247474298 247474595 -34719069 - AluSq SINE Alu -16 297 1 2342 73 0 35 chr1 247474761 247475074 -34718590 - AluSg SINE Alu -8 302 1 1833 174 0 3 chr1 247475085 247475372 -34718292 - AluJo SINE Alu -26 286 1 667 299 25 25 chr1 247476214 247476343 -34717321 + MIR SINE MIR 17 148 -114 2363 116 137 13 chr1 247476343 247476724 -34716940 + MSTA LTR MaLR 1 428 0 667 299 25 25 chr1 247476724 247476838 -34716826 + MIR SINE MIR 147 260 -2 232 271 0 0 chr1 247476859 247476929 -34716735 + (CCA)n Simple_repeat Simple_repeat 2 71 0 835 171 0 0 chr1 247478285 247478414 -34715250 + FLAM_C SINE Alu 14 142 -1 305 334 47 27 chr1 247479117 247479267 -34714397 + MIR SINE MIR 3 154 -56 435 19 0 0 chr1 247480314 247480366 -34713298 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 57 0 0 chr1 247480487 247480522 -34713142 + AT_rich Low_complexity Low_complexity 1 35 0 238 281 0 11 chr1 247481315 247481404 -34712260 + (CTA)n Simple_repeat Simple_repeat 1 88 0 2083 110 0 47 chr1 247481442 247481760 -34711904 + AluSq SINE Alu 1 303 -10 2207 51 84 4 chr1 247482284 247482559 -34711105 + AluY SINE Alu 1 297 -14 181 326 0 0 chr1 247482829 247482878 -34710786 + MIR SINE MIR 75 123 -85 280 349 38 9 chr1 247483369 247483475 -34710189 + L2 LINE L2 3136 3244 -28 1954 116 33 0 chr1 247484043 247484318 -34709346 - AluSq SINE Alu -29 284 1 1959 153 14 36 chr1 247484342 247484518 -34709146 - L1MB3 LINE L1 0 6183 6018 2114 131 3 0 chr1 247484518 247484808 -34708856 + AluSx SINE Alu 1 291 -21 1959 153 14 36 chr1 247484808 247484996 -34708668 - L1MB3 LINE L1 -165 6018 5827 293 297 160 47 chr1 247485752 247485816 -34707848 - L2 LINE L2 -357 2957 2902 2316 87 0 7 chr1 247485816 247486126 -34707538 + AluY SINE Alu 1 308 -3 293 297 160 47 chr1 247486126 247486273 -34707391 - L2 LINE L2 -412 2902 2722 267 200 158 50 chr1 247487003 247487123 -34706541 + L2 LINE L2 2989 3121 -192 402 290 65 7 chr1 247487362 247487500 -34706164 + L2 LINE L2 3119 3264 -49 2037 129 3 0 chr1 247488928 247489214 -34704450 - AluSx SINE Alu -25 287 1 503 246 37 42 chr1 247489296 247489419 -34704245 + MER112 DNA MER1_type 65 188 -72 414 0 0 0 chr1 247489419 247489465 -34704199 + (CA)n Simple_repeat Simple_repeat 2 47 0 503 246 37 42 chr1 247489465 247489532 -34704132 + MER112 DNA MER1_type 188 254 -6 2486 58 0 10 chr1 247493019 247493329 -34700335 - AluY SINE Alu -4 307 1 662 224 146 0 chr1 247493778 247493943 -34699721 + MIR SINE MIR 63 251 -11 233 259 106 0 chr1 247496581 247496666 -34696998 - MER5A DNA MER1_type -6 183 90 314 305 68 8 chr1 247497878 247497996 -34695668 - L3 LINE CR1 -178 1399 1275 455 293 84 5 chr1 247498010 247498225 -34695439 + MIR SINE MIR 5 236 -26 21 0 0 0 chr1 247501651 247501672 -34691992 + AT_rich Low_complexity Low_complexity 1 21 0 233 224 0 0 chr1 247502660 247502709 -34690955 + MIR SINE MIR 103 151 -111 2420 75 3 0 chr1 247503529 247503822 -34689842 - AluSg SINE Alu -11 299 6 21 0 0 0 chr1 247503986 247504007 -34689657 + AT_rich Low_complexity Low_complexity 1 21 0 282 327 4 0 chr1 247505673 247505759 -34687905 + MIR SINE MIR 34 120 -103 2246 93 0 30 chr1 247505779 247506079 -34687585 + AluSp SINE Alu 1 291 -22 2130 104 10 30 chr1 247506279 247506576 -34687088 + AluSx SINE Alu 5 295 -17 181 296 19 0 chr1 247506687 247506741 -34686923 - L2 LINE L2 0 3272 3218 281 271 161 8 chr1 247506839 247506957 -34686707 - MIR3 SINE MIR -14 194 59 553 263 55 71 chr1 247507087 247507342 -34686322 - MIR SINE MIR -6 256 6 207 162 0 0 chr1 247508728 247508765 -34684899 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 1097 165 0 0 chr1 247509376 247509546 -34684118 - AluJo SINE Alu -18 294 125 458 271 52 0 chr1 247509760 247509915 -34683749 - L1ME4a LINE L1 -233 5888 5726 185 191 0 21 chr1 247509917 247509964 -34683700 + CT-rich Low_complexity Low_complexity 2 47 0 542 197 28 10 chr1 247509965 247510094 -34683570 - L1ME4a LINE L1 -394 5727 5606 193 164 36 91 chr1 247511064 247511119 -34682545 + MIR3 SINE MIR 150 201 -7 2635 71 0 3 chr1 247511381 247511721 -34681943 + L1PA14 LINE L1 5822 6160 -1 288 256 35 0 chr1 247511815 247511901 -34681763 - MIR3 SINE MIR -53 155 67 185 0 0 39 chr1 247512557 247512583 -34681081 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 605 75 53 11 chr1 247513719 247513813 -34679851 + MER4A LTR ERV1 1 98 -566 1617 112 51 80 chr1 247513813 247514169 -34679495 + MER4A LTR ERV1 261 664 0 21 0 0 0 chr1 247514589 247514610 -34679054 + AT_rich Low_complexity Low_complexity 1 21 0 2179 105 10 0 chr1 247516083 247516377 -34677287 - AluSg SINE Alu -13 297 1 1302 222 0 43 chr1 247516506 247516808 -34676856 - AluJo SINE Alu -23 289 1 231 146 0 0 chr1 247516870 247516911 -34676753 + (TATG)n Simple_repeat Simple_repeat 4 44 0 823 99 18 0 chr1 247518493 247518604 -34675060 - AluSq/x SINE Alu -199 113 1 2356 107 0 0 chr1 247518780 247519088 -34674576 + AluSx SINE Alu 1 308 -4 193 269 15 15 chr1 247519771 247519838 -34673826 - MIR SINE MIR -113 149 83 226 216 98 0 chr1 247521466 247521517 -34672147 - tRNA-Ile-ATT tRNA tRNA -5 72 17 1092 169 100 41 chr1 247522840 247523206 -34670458 + MER39 LTR ERV1 1 707 0 207 0 0 0 chr1 247523412 247523435 -34670229 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr1 247523570 247523598 -34670066 + (GA)n Simple_repeat Simple_repeat 1 28 0 192 340 82 10 chr1 247523960 247524057 -34669607 + L2 LINE L2 3161 3264 -8 2095 124 0 10 chr1 247524472 247524484 -34669180 - AluSx SINE Alu -17 295 284 354 23 0 0 chr1 247524484 247524527 -34669137 + (TG)n Simple_repeat Simple_repeat 2 44 0 2095 124 0 10 chr1 247524527 247524812 -34668852 - AluSx SINE Alu -28 284 1 194 229 43 43 chr1 247524900 247524970 -34668694 - L2 LINE L2 -17 3255 3186 2322 80 3 0 chr1 247525146 247525435 -34668229 - AluSp SINE Alu -23 290 1 23 33 0 0 chr1 247525439 247525469 -34668195 + AT_rich Low_complexity Low_complexity 1 30 0 2113 119 3 13 chr1 247525845 247526148 -34667516 + AluSx SINE Alu 1 300 -12 691 278 21 5 chr1 247528035 247528229 -34665435 - MIR SINE MIR 0 262 66 295 192 27 14 chr1 247528596 247528669 -34664995 + MER5B DNA MER1_type 22 95 -83 4142 194 77 4 chr1 247529318 247530289 -34663375 + L1P4 LINE L1 4442 5458 -708 1653 180 0 56 chr1 247533194 247533517 -34660147 - AluJo SINE Alu -7 305 1 1863 160 110 36 chr1 247533768 247534186 -34659478 + LTR47A LTR ERVL 4 452 0 260 233 0 56 chr1 247534252 247534342 -34659322 + CT-rich Low_complexity Low_complexity 2 86 0 2437 92 0 0 chr1 247535506 247535809 -34657855 - AluSc SINE Alu -6 303 1 391 259 91 16 chr1 247535908 247536226 -34657438 - L2 LINE L2 -1239 2075 1657 1196 256 92 18 chr1 247536268 247536324 -34657340 + L2 LINE L2 2379 2429 -884 1766 152 0 0 chr1 247536324 247536581 -34657083 + AluSx SINE Alu 41 297 -15 1196 256 92 18 chr1 247536581 247537396 -34656268 + L2 LINE L2 2429 3312 -1 37 23 0 0 chr1 247537953 247537997 -34655667 + AT_rich Low_complexity Low_complexity 1 44 0 289 269 52 30 chr1 247538109 247538243 -34655421 + MIR3 SINE MIR 4 140 -68 207 192 58 0 chr1 247538413 247538465 -34655199 + MIR SINE MIR 205 259 -3 207 0 0 0 chr1 247538467 247538490 -34655174 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 28 0 0 0 chr1 247539177 247539205 -34654459 + AT_rich Low_complexity Low_complexity 1 28 0 195 283 104 28 chr1 247540874 247540980 -34652684 + MIR3 SINE MIR 55 168 -40 270 204 40 132 chr1 247542437 247542507 -34651157 - MIR SINE MIR -72 136 113 2352 87 3 7 chr1 247542507 247542807 -34650857 - AluSq SINE Alu -14 299 1 270 204 40 132 chr1 247542807 247542889 -34650775 - MIR SINE MIR -95 113 25 299 219 0 16 chr1 247543651 247543715 -34649949 - MER103 DNA DNA -50 116 54 2055 133 7 3 chr1 247545374 247545675 -34647989 - AluJb SINE Alu -6 306 5 5004 208 71 36 chr1 247547392 247547601 -34646063 + Charlie1a DNA MER1_type 1 201 -2560 2155 122 10 0 chr1 247547601 247547895 -34645769 - AluSx SINE Alu -15 297 1 5004 208 71 36 chr1 247547895 247549090 -34644574 + Charlie1a DNA MER1_type 201 1455 0 285 321 22 22 chr1 247549096 247549233 -34644431 - MIR SINE MIR -74 188 52 4867 111 32 29 chr1 247549818 247550047 -34643617 - L1PA16 LINE L1 -9 6157 5930 2162 105 14 0 chr1 247550047 247550342 -34643322 + AluY SINE Alu 1 299 -12 4867 111 32 29 chr1 247550342 247550767 -34642897 - L1PA16 LINE L1 -236 5930 5498 1770 144 13 43 chr1 247550767 247551072 -34642592 - AluJo SINE Alu -16 296 1 4867 111 32 29 chr1 247551072 247551172 -34642492 - L1PA16 LINE L1 -668 5498 5400 4077 77 13 9 chr1 247651172 247651706 -34541958 + THE1A-int LTR MaLR 1045 1580 0 2615 96 8 8 chr1 247651706 247652061 -34541603 + THE1A LTR MaLR 1 355 0 420 260 219 11 chr1 247652497 247652707 -34540957 - MIR SINE MIR -3 259 14 2208 97 4 0 chr1 247652852 247653170 -34540494 + AluSp SINE Alu 5 323 0 2416 107 22 22 chr1 247653450 247653805 -34539859 + THE1A LTR MaLR 1 355 0 6632 113 24 2 chr1 247653805 247654733 -34538931 + THE1A-int LTR MaLR 1 948 -632 211 205 0 0 chr1 247655367 247655406 -34538258 + CT-rich Low_complexity Low_complexity 2 40 0 441 0 0 0 chr1 247655406 247655455 -34538209 + (CA)n Simple_repeat Simple_repeat 1 49 0 238 238 0 32 chr1 247655701 247655764 -34537900 + CT-rich Low_complexity Low_complexity 2 62 0 24 53 0 0 chr1 247657375 247657413 -34536251 + GC_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr1 247657616 247657648 -34536016 + GC_rich Low_complexity Low_complexity 1 32 0 10113 154 21 10 chr1 247658117 247658558 -34535106 - L1PA14 LINE L1 0 6161 5726 958 126 0 15 chr1 247658558 247658693 -34534971 - FLAM_C SINE Alu 0 133 1 10113 154 21 10 chr1 247658693 247659902 -34533762 - L1PA14 LINE L1 -435 5726 4444 2448 77 0 3 chr1 247659902 247660200 -34533464 - AluSq SINE Alu -16 297 1 10113 154 21 10 chr1 247660200 247661042 -34532622 - L1PA14 LINE L1 -1717 4444 3613 218 313 38 12 chr1 247663733 247663813 -34529851 - L2 LINE L2 0 3313 3232 259 252 93 0 chr1 247663984 247664091 -34529573 - L2 LINE L2 -2009 1305 1189 1882 103 0 0 chr1 247664115 247664358 -34529306 + AluSq SINE Alu 1 243 -70 243 185 185 0 chr1 247664526 247664591 -34529073 - MER116 DNA Mariner -2 78 2 995 215 66 12 chr1 247664856 247665098 -34528566 + MER33 DNA MER1_type 1 255 -69 943 59 15 0 chr1 247665240 247665375 -34528289 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 383 130 0 14 chr1 247665377 247665446 -34528218 + (TCCC)n Simple_repeat Simple_repeat 4 71 0 2088 117 19 16 chr1 247665446 247665789 -34527875 - AluSx SINE Alu 0 345 2 2384 100 40 53 chr1 247666343 247666723 -34526941 - THE1C LTR MaLR 0 375 1 194 224 20 41 chr1 247666840 247666889 -34526775 + L2 LINE L2 3224 3271 -1 25 31 0 0 chr1 247669942 247669974 -34523690 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr1 247670087 247670112 -34523552 + (TG)n Simple_repeat Simple_repeat 2 26 0 2279 98 0 0 chr1 247670112 247670397 -34523267 - AluSx SINE Alu -27 285 1 2014 154 0 0 chr1 247670534 247670827 -34522837 - AluJb SINE Alu -19 293 1 1923 210 56 19 chr1 247670839 247671354 -34522310 + MER114 LTR ERV 15 548 -100 641 246 15 0 chr1 247671362 247671492 -34522172 - FLAM_A SINE Alu -10 132 1 1878 159 190 38 chr1 247672700 247673122 -34520542 - MER66B LTR ERV1 0 486 1 4677 136 20 24 chr1 247673963 247674723 -34518941 + Tigger2 DNA MER2_type 1 757 -1961 1319 119 62 35 chr1 247674765 247674805 -34518859 + Tigger2 DNA MER2_type 2462 2499 -219 2261 110 0 0 chr1 247674805 247675097 -34518567 - AluSc SINE Alu -17 292 1 1319 119 62 35 chr1 247675097 247675283 -34518381 + Tigger2 DNA MER2_type 2499 2694 -24 704 282 115 44 chr1 247676204 247676569 -34517095 - LTR16C LTR ERVL -4 487 97 874 332 90 30 chr1 247677260 247677506 -34516158 - HERV16 LTR ERVL -876 4888 4658 2259 186 29 54 chr1 247677506 247677791 -34515873 - MLT1C LTR MaLR 0 467 197 1775 181 0 16 chr1 247677791 247678094 -34515570 - AluJo SINE Alu -14 298 1 2259 186 29 54 chr1 247678094 247678287 -34515377 - MLT1C LTR MaLR -270 197 1 874 332 90 30 chr1 247678287 247679605 -34514059 - HERV16 LTR ERVL -1106 4658 3152 853 344 83 34 chr1 247679657 247680076 -34513588 - HERV16 LTR ERVL -3427 1569 1136 1998 146 10 0 chr1 247680076 247680370 -34513294 - AluSq SINE Alu -16 297 1 853 344 83 34 chr1 247680370 247680673 -34512991 - HERV16 LTR ERVL -3860 1136 849 277 319 121 20 chr1 247680877 247681125 -34512539 - L2 LINE L2 -675 2639 2367 710 143 19 9 chr1 247681129 247681234 -34512430 - AluJb SINE Alu -22 290 185 357 295 33 11 chr1 247681242 247681425 -34512239 - L1ME1 LINE L1 -5321 1075 889 * 5198 236 81 69 chr1 247681424 247681571 -34512093 + L1ME1 LINE L1 1069 1213 -5002 2262 102 3 3 chr1 247681571 247681864 -34511800 + AluSx SINE Alu 1 293 -19 5198 236 81 69 chr1 247681864 247682205 -34511459 + L1ME1 LINE L1 1213 1549 -4666 2101 119 27 0 chr1 247682205 247682499 -34511165 + AluSx SINE Alu 1 302 -10 5198 236 81 69 chr1 247682499 247683052 -34510612 + L1ME1 LINE L1 1549 2094 -4121 1623 117 17 13 chr1 247683052 247683283 -34510381 + AluSg/x SINE Alu 77 308 -2 5198 236 81 69 chr1 247683283 247683530 -34510134 + L1ME1 LINE L1 2094 2337 -3878 204 97 0 0 chr1 247683530 247683561 -34510103 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 5198 236 81 69 chr1 247683561 247684201 -34509463 + L1ME1 LINE L1 2337 2968 -3247 1349 192 69 4 chr1 247684201 247684462 -34509202 + AluJo SINE Alu 5 282 -30 5198 236 81 69 chr1 247684462 247684969 -34508695 + L1ME1 LINE L1 2968 3468 -2747 1378 184 54 11 chr1 247684969 247685247 -34508417 - AluJo SINE Alu -21 291 2 5198 236 81 69 chr1 247685247 247685401 -34508263 + L1ME1 LINE L1 3468 3619 -2596 2074 120 31 0 chr1 247685401 247685692 -34507972 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr1 247685693 247685713 -34507951 + (TA)n Simple_repeat Simple_repeat 1 20 0 5198 236 81 69 chr1 247685713 247686218 -34507446 + L1ME1 LINE L1 3619 4226 -1989 2295 75 6 35 chr1 247686218 247686536 -34507128 + AluY SINE Alu 1 309 -2 5198 236 81 69 chr1 247686536 247686659 -34507005 + L1ME1 LINE L1 4226 4346 -1869 1371 155 42 125 chr1 247686663 247686970 -34506694 + MLT1B LTR MaLR 1 243 -122 2158 101 0 24 chr1 247686970 247687268 -34506396 - AluSx SINE Alu -21 291 1 1371 155 42 125 chr1 247687268 247687349 -34506315 + MLT1B LTR MaLR 243 329 -36 3680 214 67 34 chr1 247687360 247688657 -34505007 + L1ME1 LINE L1 4349 5694 -541 2245 94 0 3 chr1 247688657 247688955 -34504709 - AluSq SINE Alu -16 297 1 3680 214 67 34 chr1 247688955 247689233 -34504431 + L1ME1 LINE L1 5694 5961 -274 2217 73 14 7 chr1 247689233 247689522 -34504142 + AluY SINE Alu 1 291 -20 1010 92 8 0 chr1 247689537 247689668 -34503996 + AluSq/x SINE Alu 1 132 -180 2231 87 11 0 chr1 247689793 247690079 -34503585 + AluSc SINE Alu 1 289 -20 2211 111 3 0 chr1 247690094 247690392 -34503272 + AluSx SINE Alu 1 299 -13 432 329 154 31 chr1 247690570 247691302 -34502362 - L2 LINE L2 -1491 1823 1002 220 250 18 18 chr1 247691627 247691683 -34501981 + L2 LINE L2 3258 3313 0 201 264 111 0 chr1 247692624 247692696 -34500968 + MIR SINE MIR 101 180 -82 181 268 37 61 chr1 247693504 247693586 -34500078 + MIR3 SINE MIR 100 179 -29 824 156 7 22 chr1 247693745 247693880 -34499784 - FLAM_C SINE Alu 0 133 1 509 263 34 0 chr1 247695235 247695353 -34498311 - MIR SINE MIR -91 171 50 28 29 0 0 chr1 247695359 247695394 -34498270 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 247698052 247698074 -34495590 + GC_rich Low_complexity Low_complexity 1 22 0 318 279 176 58 chr1 247698379 247698755 -34494909 - L1M2 LINE L1 -5690 1159 740 194 316 25 12 chr1 247700216 247700303 -34493361 + MIR SINE MIR 38 123 -93 428 247 0 0 chr1 247700445 247700522 -34493142 - MER2 DNA MER2_type -1 344 268 2162 159 0 23 chr1 247700535 247700618 -34493046 - MER2 DNA MER2_type -1 343 260 1713 181 7 3 chr1 247700618 247700905 -34492759 + AluSx SINE Alu 1 288 -24 2162 159 0 23 chr1 247700905 247701172 -34492492 - MER2 DNA MER2_type -84 260 1 239 54 27 0 chr1 247701226 247701263 -34492401 + (TTG)n Simple_repeat Simple_repeat 1 38 0 404 203 12 198 chr1 247701331 247701573 -34492091 - L2 LINE L2 -4 3309 3113 341 154 0 0 chr1 247701678 247701743 -34491921 - L1MD2 LINE L1 -1 6358 6294 1701 249 77 35 chr1 247701746 247702458 -34491206 - L1MDa LINE L1 -2275 4265 3524 3271 173 53 55 chr1 247702469 247702912 -34490752 - L1MDa LINE L1 -3496 3044 2602 2255 91 0 20 chr1 247702912 247703209 -34490455 - AluSx SINE Alu -21 291 1 3271 173 53 55 chr1 247703209 247703940 -34489724 - L1MDa LINE L1 -3938 2602 1857 834 199 64 0 chr1 247703947 247704118 -34489546 - L1MDa LINE L1 -6357 183 2 621 273 53 18 chr1 247704270 247704497 -34489167 + MIR SINE MIR 28 262 0 365 311 46 96 chr1 247704671 247704759 -34488905 - L3 LINE CR1 -907 670 579 1689 174 35 0 chr1 247704759 247705047 -34488617 - AluJb SINE Alu -14 298 1 365 311 46 96 chr1 247705047 247705058 -34488606 - L3 LINE CR1 -998 579 569 2484 78 0 7 chr1 247705058 247705365 -34488299 - AluSq SINE Alu -8 305 1 365 311 46 96 chr1 247705365 247705630 -34488034 - L3 LINE CR1 -1008 569 323 22 0 0 0 chr1 247705899 247705921 -34487743 + AT_rich Low_complexity Low_complexity 1 22 0 1370 101 5 11 chr1 247706126 247706339 -34487325 - AluSg/x SINE Alu 0 306 95 2273 109 0 0 chr1 247707248 247707541 -34486123 - AluSx SINE Alu -19 293 1 189 266 62 16 chr1 247708497 247708561 -34485103 + MIR3 SINE MIR 108 174 -34 855 291 82 12 chr1 247708670 247708989 -34484675 + L2 LINE L2 2147 2487 -827 207 0 0 0 chr1 247709171 247709194 -34484470 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2243 96 0 0 chr1 247709196 247709487 -34484177 - AluSx SINE Alu -19 293 3 637 307 59 7 chr1 247709501 247709771 -34483893 - L1MC/D LINE L1 -2214 5594 5311 486 306 57 24 chr1 247712070 247712318 -34481346 + MIR SINE MIR 4 259 -3 212 372 54 39 chr1 247714944 247715073 -34478591 + L2 LINE L2 3133 3263 -9 1064 74 107 0 chr1 247716367 247716516 -34477148 + AluY SINE Alu 140 304 -7 259 238 107 24 chr1 247721419 247721503 -34472161 - MIR SINE MIR -115 147 57 280 308 0 0 chr1 247726743 247726821 -34466843 - MER117 DNA MER1_type -119 78 1 186 300 146 27 chr1 247727261 247727371 -34466293 - L2 LINE L2 0 3272 3150 * 326 343 78 63 chr1 247727342 247727738 -34465926 - L2 LINE L2 -94 3219 2818 630 260 91 112 chr1 247727750 247728007 -34465657 - L2 LINE L2 -1049 2265 2004 1687 150 66 7 chr1 247728007 247728280 -34465384 + AluJb SINE Alu 1 289 -23 630 260 91 112 chr1 247728280 247728305 -34465359 - L2 LINE L2 -1310 2004 1980 198 103 0 0 chr1 247728305 247728334 -34465330 + (CAA)n Simple_repeat Simple_repeat 2 30 0 630 260 91 112 chr1 247728334 247728534 -34465130 - L2 LINE L2 -1334 1980 1792 569 321 134 8 chr1 247728548 247728928 -34464736 - L2 LINE L2 -2144 1170 743 233 50 0 0 chr1 247729456 247729496 -34464168 - Alu SINE Alu -2 164 125 1880 75 0 0 chr1 247729496 247729722 -34463942 - AluY SINE Alu -85 226 1 2384 97 0 3 chr1 247729821 247730130 -34463534 - AluSg SINE Alu -2 308 1 550 229 159 0 chr1 247731518 247731675 -34461989 - MER46C DNA MER2_type -35 303 122 1729 171 21 0 chr1 247731678 247731959 -34461705 + AluJb SINE Alu 1 287 -25 263 188 304 45 chr1 247731974 247732086 -34461578 - MER46C DNA MER2_type -197 141 1 1907 157 24 0 chr1 247732985 247733278 -34460386 - AluJb SINE Alu -12 300 1 403 259 223 69 chr1 247735229 247735503 -34458161 + MER5C DNA MER1_type 9 324 0 191 368 190 12 chr1 247738143 247738306 -34455358 + L2 LINE L2 3080 3271 -1 1022 144 39 0 chr1 247740177 247740330 -34453334 - AluJb SINE Alu -17 295 137 244 305 61 12 chr1 247740670 247740752 -34452912 - L2 LINE L2 -19 3253 3168 1529 128 0 8 chr1 247742783 247743017 -34450647 - AluSg/x SINE Alu -2 310 79 228 180 20 0 chr1 247743243 247743293 -34450371 + MIR3 SINE MIR 113 163 -45 5683 105 27 8 chr1 247744703 247745553 -34448111 + L1PA16 LINE L1 5279 6153 -13 371 150 156 69 chr1 247745668 247745705 -34447959 + MIR SINE MIR 86 118 -144 2209 110 3 3 chr1 247745705 247746014 -34447650 - AluSx SINE Alu -3 309 1 371 150 156 69 chr1 247746014 247746136 -34447528 + MIR SINE MIR 118 259 -3 477 260 107 11 chr1 247748450 247748627 -34445037 + MLT1L LTR MaLR 1 194 -421 325 247 47 0 chr1 247748677 247748762 -34444902 + MLT1L LTR MaLR 413 501 -114 4212 107 115 130 chr1 247749672 247751098 -34442566 - pTR5 LTR ERV1 0 2438 743 2838 125 2 11 chr1 247751342 247751782 -34441882 - L1PA15 LINE L1 0 6165 5730 183 80 0 0 chr1 247752270 247752295 -34441369 + (T)n Simple_repeat Simple_repeat 1 25 0 464 291 20 40 chr1 247752296 247752495 -34441169 + L1M4 LINE L1 3792 3986 -2160 6427 49 5 1 chr1 247752582 247753414 -34440250 + L1PA5 LINE L1 5298 6132 -22 316 282 28 21 chr1 247753447 247753589 -34440075 + L1M4 LINE L1 4182 4324 -1822 2396 87 0 10 chr1 247753595 247753904 -34439760 + AluSx SINE Alu 1 306 -6 265 61 0 76 chr1 247755159 247755225 -34438439 + (TCC)n Simple_repeat Simple_repeat 1 61 0 773 301 135 16 chr1 247755225 247755654 -34438010 + MLT1J LTR MaLR 32 511 0 22 0 0 0 chr1 247756150 247756172 -34437492 + AT_rich Low_complexity Low_complexity 1 22 0 505 338 103 0 chr1 247756381 247756662 -34437002 + L2 LINE L2 2360 2669 -645 2156 142 0 0 chr1 247756700 247757003 -34436661 - AluSx SINE Alu -9 303 1 1248 62 0 0 chr1 247757007 247757169 -34436495 + (TTC)n Simple_repeat Simple_repeat 1 162 0 493 140 10 10 chr1 247757171 247757271 -34436393 + CT-rich Low_complexity Low_complexity 2 101 0 1597 171 31 14 chr1 247758886 247759178 -34434486 + AluJo SINE Alu 1 297 -15 467 174 335 6 chr1 247759324 247759485 -34434179 + LTR50 LTR ERVL 170 383 -412 511 249 115 43 chr1 247759492 247759520 -34434144 + LTR50 LTR ERVL 525 550 -245 2174 129 0 7 chr1 247759520 247759829 -34433835 - AluSx SINE Alu -5 307 1 511 249 115 43 chr1 247759829 247760053 -34433611 + LTR50 LTR ERVL 550 795 0 27 0 0 0 chr1 247760084 247760111 -34433553 + AT_rich Low_complexity Low_complexity 1 27 0 1745 171 0 34 chr1 247760135 247760428 -34433236 - AluJb SINE Alu -29 283 1 286 310 88 29 chr1 247762036 247762207 -34431457 - MIR SINE MIR -79 183 3 3303 160 95 105 chr1 247762343 247762965 -34430699 - L1MC3 LINE L1 0 7785 7096 225 300 0 0 chr1 247762965 247763045 -34430619 - MLT1F1 LTR MaLR -453 114 35 3303 160 95 105 chr1 247763045 247763347 -34430317 - L1MC3 LINE L1 -689 7096 6792 324 158 0 0 chr1 247763372 247763429 -34430235 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 1576 188 110 33 chr1 247764922 247765449 -34428215 - MLT2A2 LTR ERVL 0 554 1 258 336 82 18 chr1 247766068 247766178 -34427486 - L2 LINE L2 -5 3267 3151 2135 163 29 88 chr1 247766340 247766831 -34426833 - MLT2B2 LTR ERVL 0 515 54 21 0 0 0 chr1 247767289 247767310 -34426354 + AT_rich Low_complexity Low_complexity 1 21 0 711 169 27 40 chr1 247767706 247767854 -34425810 + MLT1B LTR MaLR 1 146 -244 838 169 87 15 chr1 247768193 247768388 -34425276 - MER3 DNA MER1_type 0 209 1 757 248 122 14 chr1 247770240 247770589 -34423075 + L2 LINE L2 2230 2692 -622 286 149 0 0 chr1 247770592 247770639 -34423025 - L2 LINE L2 -560 2754 2708 2326 95 0 7 chr1 247770640 247770936 -34422728 - AluSq SINE Alu -19 294 1 1968 175 51 42 chr1 247770977 247771405 -34422259 + MSTB1 LTR MaLR 1 432 0 611 308 35 56 chr1 247771406 247771692 -34421972 + L2 LINE L2 3028 3307 -6 420 294 143 28 chr1 247772887 247773173 -34420491 + L2 LINE L2 2946 3264 -49 705 282 97 4 chr1 247773221 247773448 -34420216 + MIR SINE MIR 15 262 0 613 277 25 35 chr1 247773664 247773794 -34419870 + MIR SINE MIR 2 132 -130 14169 139 20 16 chr1 247773794 247775090 -34418574 + Tigger1 DNA MER2_type 1 1290 -1128 1751 177 10 16 chr1 247775090 247775400 -34418264 - AluJb SINE Alu -4 308 1 14169 139 20 16 chr1 247775400 247776138 -34417526 + Tigger1 DNA MER2_type 1290 2049 -369 2324 95 13 0 chr1 247776138 247776442 -34417222 + AluSx SINE Alu 1 308 -4 14169 139 20 16 chr1 247776442 247776814 -34416850 + Tigger1 DNA MER2_type 2049 2418 0 613 277 25 35 chr1 247776814 247776885 -34416779 + MIR SINE MIR 132 201 -61 2068 133 93 42 chr1 247777735 247778142 -34415522 + MSTA LTR MaLR 1 428 0 1537 145 67 47 chr1 247779398 247779648 -34414016 - L1MD1 LINE L1 -2 6240 5979 2174 91 0 11 chr1 247779648 247779962 -34413702 + AluY SINE Alu 1 311 0 1537 145 67 47 chr1 247779962 247780054 -34413610 - L1MD1 LINE L1 -263 5979 5890 635 162 9 0 chr1 247780054 247780159 -34413505 - FLAM_A SINE Alu -11 131 26 2873 130 10 20 chr1 247780164 247780673 -34412991 - L1MD1 LINE L1 -358 5884 5381 359 169 0 0 chr1 247780674 247780733 -34412931 - Tigger3b DNA MER2_type 0 1231 1173 8205 207 85 11 chr1 247780743 247781206 -34412458 - L1MA1 LINE L1 -2 7719 7292 2143 102 105 9 chr1 247781206 247781548 -34412116 + THE1C LTR MaLR 1 375 0 8205 207 85 11 chr1 247781548 247783331 -34410333 - L1MA1 LINE L1 -429 7292 5642 1015 66 26 0 chr1 247783331 247783482 -34410182 + (TTTC)n Simple_repeat Simple_repeat 2 156 0 8205 207 85 11 chr1 247783482 247784961 -34408703 - L1MA1 LINE L1 -2079 5642 3575 1888 110 97 9 chr1 247784962 247785281 -34408383 + THE1C LTR MaLR 3 349 -26 1399 139 12 28 chr1 247785285 247785537 -34408127 - L1MA1 LINE L1 -5980 1586 1339 955 172 10 5 chr1 247785542 247785734 -34407930 - L1MA1 LINE L1 -6668 898 706 2027 198 55 33 chr1 247785742 247786232 -34407432 - L1MA1 LINE L1 -7048 517 17 6729 136 29 6 chr1 247786240 247787398 -34406266 - Tigger3b DNA MER2_type -46 1185 1 2470 226 37 62 chr1 247787398 247787592 -34406072 - L1M4 LINE L1 -765 5381 5184 1062 206 183 19 chr1 247787592 247787849 -34405815 - AluJb SINE Alu -3 299 1 2470 226 37 62 chr1 247787849 247788740 -34404924 - L1M4 LINE L1 -962 5184 4323 1625 206 67 32 chr1 247788738 247788839 -34404825 - L1MDa LINE L1 -2974 3566 3470 * 3623 42 0 11 chr1 247788839 247789291 -34404373 - L1PA7 LINE L1 -2 6152 5706 1625 206 67 32 chr1 247789291 247789398 -34404266 - L1MDa LINE L1 -3070 3470 3368 843 39 0 0 chr1 247789398 247789501 -34404163 + (GA)n Simple_repeat Simple_repeat 2 104 0 1647 184 7 11 chr1 247789501 247789779 -34403885 - AluJb SINE Alu -34 278 2 1625 206 67 32 chr1 247789779 247790187 -34403477 - L1MDa LINE L1 -3171 3369 2921 6733 197 87 33 chr1 247790251 247790828 -34402836 - L1MDa LINE L1 -3959 2581 2037 2209 142 0 0 chr1 247790828 247791139 -34402525 - AluSx SINE Alu -1 311 1 6733 197 87 33 chr1 247791139 247791228 -34402436 - L1MDa LINE L1 -4503 2037 1954 1553 168 64 30 chr1 247791228 247791525 -34402139 - AluJo SINE Alu -5 307 1 1859 187 0 9 chr1 247791530 247791845 -34401819 - AluSx SINE Alu 0 312 1 6733 197 87 33 chr1 247791845 247793456 -34400208 - L1MDa LINE L1 -4589 1951 19 371 296 28 7 chr1 247793457 247793599 -34400065 - L1M4 LINE L1 -846 5300 5156 312 143 143 14 chr1 247794947 247795017 -34398647 - MER116 DNA Mariner 0 80 2 24 0 0 0 chr1 247797005 247797029 -34396635 + AT_rich Low_complexity Low_complexity 1 24 0 2145 116 0 7 chr1 247797434 247797737 -34395927 - AluSx SINE Alu -11 301 1 333 211 274 0 chr1 247798289 247798384 -34395280 + MIR SINE MIR 29 149 -113 648 234 6 0 chr1 247798435 247798593 -34395071 + MER63A DNA MER1_type 52 210 0 371 240 62 10 chr1 247798596 247798692 -34394972 + MIR SINE MIR 162 262 0 228 252 129 95 chr1 247798806 247798953 -34394711 + MIR SINE MIR 100 251 -11 307 323 154 26 chr1 247798971 247799237 -34394427 + L2 LINE L2 1866 2165 -1149 30776 96 11 21 chr1 247799514 247805926 -34387738 - L1PA7 LINE L1 0 6469 1 596 252 71 50 chr1 247805947 247806185 -34387479 + L2 LINE L2 3052 3294 -19 522 302 125 16 chr1 247806545 247807309 -34386355 - L1M2 LINE L1 -508 5783 4936 2123 184 12 35 chr1 247807353 247807842 -34385822 - L1MD3 LINE L1 -37 7958 7481 1397 210 81 47 chr1 247807842 247808289 -34385375 + MLT1C LTR MaLR 6 467 0 232 143 0 0 chr1 247808294 247808336 -34385328 - L1MC4 LINE L1 -695 7347 7306 423 216 0 11 chr1 247808339 247808427 -34385237 - MLT1F1 LTR MaLR -448 119 33 1030 184 12 20 chr1 247808427 247808672 -34384992 - L1MD3 LINE L1 -881 7114 6872 325 119 45 0 chr1 247808724 247808791 -34384873 - L1MA4 LINE L1 -1 6299 6230 340 328 57 79 chr1 247808839 247808976 -34384688 - L1M2 LINE L1 -1316 4830 4692 2354 92 7 0 chr1 247808976 247809281 -34384383 - AluSc SINE Alu -2 307 1 340 328 57 79 chr1 247809281 247809512 -34384152 - L1M2 LINE L1 -1454 4692 4470 270 234 70 119 chr1 247809659 247809860 -34383804 + MLT1L LTR MaLR 128 394 -193 421 343 11 34 chr1 247810027 247810295 -34383369 - L1M4 LINE L1 -1769 4377 4116 259 292 0 0 chr1 247810296 247810361 -34383303 - L2 LINE L2 -2 3311 3247 21 0 0 0 chr1 247810461 247810482 -34383182 + AT_rich Low_complexity Low_complexity 1 21 0 1340 265 40 20 chr1 247810928 247811520 -34382144 - L1ME3A LINE L1 -203 5967 5364 267 266 129 24 chr1 247811558 247811682 -34381982 + MIR SINE MIR 110 246 -16 255 115 66 0 chr1 247811746 247811807 -34381857 + CT-rich Low_complexity Low_complexity 3 67 0 2445 69 0 0 chr1 247812126 247812432 -34381232 - AluY SINE Alu -5 306 1 556 256 154 0 chr1 247812535 247812691 -34380973 - MER5A DNA MER1_type -6 183 4 272 322 77 7 chr1 247812817 247812960 -34380704 - L2 LINE L2 0 3313 3161 21 36 0 0 chr1 247813090 247813118 -34380546 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr1 247813207 247813229 -34380435 + (CA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr1 247813419 247813440 -34380224 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 228 35 0 0 chr1 247813439 247813468 -34380196 + (TG)n Simple_repeat Simple_repeat 2 30 0 2370 95 3 0 chr1 247813746 247814051 -34379613 + AluSp SINE Alu 1 306 -7 2163 107 17 0 chr1 247814414 247814704 -34378960 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 247814704 247814733 -34378931 + AT_rich Low_complexity Low_complexity 1 29 0 307 232 12 24 chr1 247815114 247815196 -34378468 - MLT1H LTR MaLR -388 161 81 279 350 32 8 chr1 247816338 247816461 -34377203 - MIR SINE MIR -111 151 26 3531 106 2 6 chr1 247816479 247816980 -34376684 - MER1A DNA MER1_type 0 529 31 236 256 93 0 chr1 247817012 247817098 -34376566 - MIR SINE MIR -59 203 110 26 0 0 0 chr1 247817483 247817509 -34376155 + AT_rich Low_complexity Low_complexity 1 26 0 309 156 26 0 chr1 247818033 247818110 -34375554 + L1ME4a LINE L1 5817 5895 -226 12579 120 40 77 chr1 247818260 247818867 -34374797 - Tigger1 DNA MER2_type 0 2418 1790 2042 153 3 0 chr1 247818867 247819162 -34374502 - AluSx SINE Alu -16 296 1 738 136 0 110 chr1 247819162 247819316 -34374348 - AluJb SINE Alu -171 141 5 12579 120 40 77 chr1 247819316 247821013 -34372651 - Tigger1 DNA MER2_type -627 1791 53 1561 125 129 37 chr1 247821013 247821285 -34372379 + AluSg SINE Alu 1 297 -13 12579 120 40 77 chr1 247821285 247821337 -34372327 - Tigger1 DNA MER2_type -2365 53 1 2253 174 46 13 chr1 247822782 247822931 -34370733 - L1MB5 LINE L1 -8 6166 6023 726 114 98 0 chr1 247822931 247823054 -34370610 + MER85 DNA T2_type 1 135 -4 2253 174 46 13 chr1 247823054 247823357 -34370307 - L1MB5 LINE L1 -151 6023 5699 304 267 0 0 chr1 247823375 247823450 -34370214 - HAL1 LINE L1 -2 2505 2431 572 291 130 32 chr1 247823486 247823985 -34369679 - L1MEc LINE L1 -5833 563 16 343 276 67 53 chr1 247823991 247824216 -34369448 - HAL1 LINE L1 -1540 967 740 584 128 0 0 chr1 247824644 247824738 -34368926 + LTR54B LTR ERV1 1 94 -404 2042 70 0 0 chr1 247826786 247827042 -34366622 - AluY SINE Alu -21 290 35 1354 25 12 0 chr1 247827573 247827736 -34365928 + L1PA4 LINE L1 5989 6153 -2 555 242 8 15 chr1 247828147 247828279 -34365385 - MER2 DNA MER2_type -214 131 1 453 293 91 79 chr1 247828512 247829031 -34364633 - L1MC4a LINE L1 -1925 5866 5342 310 240 54 0 chr1 247829033 247829162 -34364502 - L1MC4a LINE L1 -2354 5437 5302 1958 113 3 74 chr1 247829266 247829602 -34364062 - AluSx SINE Alu 0 312 1 5020 183 26 69 chr1 247830230 247830748 -34362916 + L1 LINE L1 2903 3441 -2705 3979 147 46 36 chr1 247830748 247831525 -34362139 + LTR1 LTR ERV1 1 785 0 5020 183 26 69 chr1 247831525 247832463 -34361201 + L1 LINE L1 3441 4297 -1849 846 303 55 46 chr1 247832554 247832857 -34360807 - L1MC4a LINE L1 -1477 4652 4353 2570 40 7 3 chr1 247832857 247833159 -34360505 - AluY SINE Alu -8 303 1 846 303 55 46 chr1 247833159 247833460 -34360204 - L1MC4a LINE L1 -1776 4353 4043 544 208 42 18 chr1 247833677 247833845 -34359819 - L1MC4a LINE L1 -5945 174 3 492 282 77 0 chr1 247834207 247834377 -34359287 + MIR SINE MIR 70 252 -10 396 217 0 52 chr1 247834578 247834693 -34358971 + MLT1J LTR MaLR 403 511 0 1771 202 66 97 chr1 247835076 247835758 -34357906 - LTR8A LTR ERV1 -66 661 1 679 345 70 32 chr1 247835906 247836463 -34357201 - ERVL LTR ERVL -395 5369 4792 513 208 67 13 chr1 247836479 247836628 -34357036 - LTR67 LTR ERVL 0 557 401 2006 147 50 11 chr1 247836929 247837290 -34356374 + THE1C LTR MaLR 1 375 0 527 171 19 0 chr1 247837442 247837547 -34356117 - L1MB5 LINE L1 -8 6166 6060 3840 97 44 2 chr1 247837666 247838234 -34355430 - L1PA13 LINE L1 -11 6152 5561 13105 195 46 12 chr1 247838236 247839494 -34354170 - L1PA13 LINE L1 -1640 5157 3943 186 43 0 0 chr1 247839494 247839517 -34354147 + (CAGTT)n Simple_repeat Simple_repeat 4 26 0 1766 196 0 3 chr1 247839517 247839808 -34353856 - AluSx SINE Alu -22 290 1 13105 195 46 12 chr1 247839808 247843420 -34350244 - L1PA13 LINE L1 -2853 3944 87 3090 186 72 28 chr1 247843423 247844443 -34349221 - L1MB5 LINE L1 -105 6069 5013 773 117 11 53 chr1 247845017 247845205 -34348459 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 246 274 30 48 chr1 247845644 247845812 -34347852 - L1ME4a LINE L1 0 6121 5957 1886 151 151 13 chr1 247845922 247846379 -34347285 + LTR48 LTR ERV1 1 520 -267 375 153 20 61 chr1 247846392 247846490 -34347174 + LTR48 LTR ERV1 678 771 -16 2608 77 4 0 chr1 247847009 247847459 -34346205 - L1P3 LINE L1 -538 5616 5165 1045 57 0 0 chr1 247847456 247847597 -34346067 + L1PA7 LINE L1 5760 5900 -254 * 1544 151 17 14 chr1 247847597 247847889 -34345775 + Tigger1 DNA MER2_type 2056 2348 -70 180 243 0 0 chr1 247847903 247847940 -34345724 - L3 LINE CR1 -490 1087 1051 260 366 8 24 chr1 247848032 247848155 -34345509 + L3 LINE CR1 1051 1171 -406 364 159 0 91 chr1 247848158 247848246 -34345418 + L1MC4 LINE L1 7816 7895 -147 288 77 0 0 chr1 247848246 247848285 -34345379 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 600 126 11 0 chr1 247848387 247848482 -34345182 - L1PA7 LINE L1 -111 6043 5948 2401 133 43 0 chr1 247848482 247848903 -34344761 - Tigger1 DNA MER2_type -680 1738 1300 383 297 160 24 chr1 247849068 247849280 -34344384 - MIR SINE MIR -2 260 20 304 236 42 0 chr1 247849305 247849377 -34344287 + L2 LINE L2 3198 3272 0 22 0 0 0 chr1 247849481 247849503 -34344161 + AT_rich Low_complexity Low_complexity 1 22 0 2330 166 44 7 chr1 247849524 247849934 -34343730 - MSTB LTR MaLR -1 425 1 223 335 73 61 chr1 247850020 247850070 -34343594 + L2 LINE L2 3091 3139 -133 2334 161 23 39 chr1 247850070 247850505 -34343159 + MSTA LTR MaLR 1 428 0 223 335 73 61 chr1 247850505 247850618 -34343046 + L2 LINE L2 3139 3256 -16 521 207 26 9 chr1 247850674 247850790 -34342874 + MIR SINE MIR 63 180 -82 944 30 0 53 chr1 247851849 247851980 -34341684 - L1PA5 LINE L1 0 6154 6031 6362 49 7 5 chr1 247852151 247852960 -34340704 + L1PA4 LINE L1 5345 6155 0 510 334 71 27 chr1 247852996 247853364 -34340300 + MER93a LTR ERV1 19 402 0 387 0 0 0 chr1 247853981 247854024 -34339640 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 211 226 57 0 chr1 247854026 247854079 -34339585 - MIR SINE MIR -98 164 109 29 0 0 0 chr1 247854808 247854837 -34338827 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr1 247855663 247855687 -34337977 + AT_rich Low_complexity Low_complexity 1 24 0 1341 159 16 104 chr1 247855689 247855847 -34337817 - AluJb SINE Alu -30 282 163 2106 126 0 0 chr1 247855847 247856132 -34337532 - AluSx SINE Alu -27 285 1 1341 159 16 104 chr1 247856132 247856282 -34337382 - AluJb SINE Alu -149 163 1 232 214 31 41 chr1 247856573 247856671 -34336993 - L1ME4a LINE L1 -1 6120 6024 1191 196 31 64 chr1 247856737 247856946 -34336718 - MER69 DNA AcHobo -7 2519 2329 2393 94 0 0 chr1 247856946 247857254 -34336410 - AluSc SINE Alu 0 309 2 1191 196 31 64 chr1 247857254 247857463 -34336201 - MER69 DNA AcHobo -197 2329 2115 1735 186 3 0 chr1 247857852 247858180 -34335484 - LTR26B LTR ERV1 0 531 203 20130 62 10 5 chr1 247858195 247861440 -34332224 + L1PA6 LINE L1 2599 5854 -300 285 237 42 51 chr1 247861557 247861675 -34331989 + MLT1J LTR MaLR 100 216 -295 2249 251 49 10 chr1 247861767 247862481 -34331183 + L1ME1 LINE L1 5405 6146 -20 32 0 0 0 chr1 247862650 247862682 -34330982 + AT_rich Low_complexity Low_complexity 1 32 0 1521 221 0 20 chr1 247862682 247862976 -34330688 - AluJo SINE Alu -24 288 1 5685 110 16 12 chr1 247863718 247864954 -34328710 - L1PA16 LINE L1 -9 6157 4918 413 292 111 32 chr1 247865746 247865962 -34327702 + L2 LINE L2 2554 2786 -528 3835 180 44 31 chr1 247865976 247866865 -34326799 - L1MA10 LINE L1 -16 6318 5419 684 252 243 6 chr1 247866978 247867315 -34326349 + L2 LINE L2 2891 3307 -6 1057 125 6 0 chr1 247867620 247867788 -34325876 - L1MA9 LINE L1 -7 6305 6137 1580 153 60 13 chr1 247867790 247868104 -34325560 + L1M2 LINE L1 5452 5780 -532 222 37 0 0 chr1 247868106 247868133 -34325531 + (CA)n Simple_repeat Simple_repeat 2 28 0 479 189 0 0 chr1 247868175 247868265 -34325399 + Tigger5 DNA MER2_type 2234 2323 0 660 353 88 29 chr1 247868648 247869436 -34324228 + L2 LINE L2 2429 3262 -10 2082 126 14 0 chr1 247869439 247869732 -34323932 + AluSx SINE Alu 1 297 -15 670 275 171 32 chr1 247872167 247872607 -34321057 + Tigger8 DNA MER2_type 155 655 -11 222 219 0 0 chr1 247872709 247872750 -34320914 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 1911 111 70 0 chr1 247872758 247873028 -34320636 - AluSg1 SINE Alu -17 292 4 288 340 120 10 chr1 247873614 247873823 -34319841 + MIR SINE MIR 21 252 -10 2444 170 51 4 chr1 247873866 247874336 -34319328 + MLT1D LTR MaLR 1 492 -13 500 255 43 52 chr1 247874437 247874668 -34318996 + MLT1L LTR MaLR 145 373 -242 190 348 138 42 chr1 247875126 247875669 -34317995 + L2 LINE L2 2365 2959 -355 207 295 13 51 chr1 247875915 247875993 -34317671 + L2 LINE L2 3238 3312 -1 1048 179 104 52 chr1 247876115 247876423 -34317241 + MER33 DNA MER1_type 1 324 0 311 171 0 179 chr1 247876433 247876550 -34317114 + MER58 DNA MER1_type 4 99 -2321 365 167 19 102 chr1 247876555 247876625 -34317039 + MER58 DNA MER1_type 2319 2378 -42 1806 180 0 23 chr1 247876625 247876931 -34316733 + AluJo SINE Alu 1 299 -13 365 167 19 102 chr1 247876931 247876968 -34316696 + MER58 DNA MER1_type 2378 2417 -3 327 346 84 55 chr1 247877285 247878109 -34315555 - L2 LINE L2 -72 3200 2366 202 304 188 0 chr1 247878182 247878251 -34315413 - L2 LINE L2 -52 3220 3139 23 0 0 0 chr1 247878903 247878926 -34314738 + AT_rich Low_complexity Low_complexity 1 23 0 219 244 100 22 chr1 247879771 247879861 -34313803 + MIR SINE MIR 110 206 -56 312 230 40 0 chr1 247880263 247880337 -34313327 - MIR SINE MIR -82 180 104 707 302 9 0 chr1 247880804 247881016 -34312648 - MIR SINE MIR 0 262 49 339 251 38 38 chr1 247881206 247881389 -34312275 + L1MC5 LINE L1 7611 7793 -168 324 302 65 22 chr1 247881421 247881560 -34312104 + L1MC5 LINE L1 7782 7926 -35 316 287 0 0 chr1 247882286 247882380 -34311284 - MER46C DNA MER2_type 0 338 245 2005 105 17 86 chr1 247882388 247882750 -34310914 - MER1B DNA MER1_type 0 337 1 472 243 11 45 chr1 247882871 247883048 -34310616 - L1ME2 LINE L1 -4 6229 6059 2101 237 90 25 chr1 247883060 247883462 -34310202 - L1ME2 LINE L1 -405 5828 5454 252 0 0 0 chr1 247883462 247883490 -34310174 + (TG)n Simple_repeat Simple_repeat 1 28 0 2101 237 90 25 chr1 247883490 247884509 -34309155 - L1ME2 LINE L1 -779 5454 4305 806 163 0 15 chr1 247884517 247884652 -34309012 - FLAM_C SINE Alu 0 133 1 1637 134 44 87 chr1 247884741 247885315 -34308349 - MER51A LTR ERV1 0 634 1 866 254 14 14 chr1 247885334 247885625 -34308039 - L1ME2 LINE L1 -3162 3053 2763 824 162 7 7 chr1 247885656 247885792 -34307872 - AluJb SINE Alu -176 136 1 1177 294 39 8 chr1 247885792 247886480 -34307184 - L1ME2 LINE L1 -3444 2771 2103 337 311 33 66 chr1 247887032 247887276 -34306388 + MER102a DNA MER1_type 95 330 0 24 0 0 0 chr1 247887393 247887417 -34306247 + AT_rich Low_complexity Low_complexity 1 24 0 1811 168 8 65 chr1 247887688 247888075 -34305589 - MLT1A1 LTR MaLR 0 365 1 2238 261 41 54 chr1 247889348 247889469 -34304195 + L2 LINE L2 2210 2331 -982 2228 120 10 0 chr1 247889469 247889768 -34303896 + AluSx SINE Alu 1 302 -10 2238 261 41 54 chr1 247889768 247890601 -34303063 + L2 LINE L2 2331 3148 -165 1631 222 36 20 chr1 247890604 247891046 -34302618 - MLT1C LTR MaLR 0 467 19 187 299 190 29 chr1 247891046 247891183 -34302481 + L2 LINE L2 3134 3292 -21 557 165 16 2 chr1 247891774 247891903 -34301761 + L1MA10 LINE L1 5317 5431 -737 2815 226 96 20 chr1 247891913 247893228 -34300436 + L1PB1 LINE L1 6 1565 -5298 * 10742 191 13 10 chr1 247893220 247896190 -34297474 + L1PB1 LINE L1 3456 6433 -434 272 226 54 0 chr1 247896220 247896313 -34297351 + (TA)n Simple_repeat Simple_repeat 2 99 0 2281 142 3 0 chr1 247896328 247896695 -34296969 + L1PB1 LINE L1 6498 6865 -2 4262 179 39 15 chr1 247896695 247897353 -34296311 + L1MA10 LINE L1 5428 6069 -265 2099 92 63 0 chr1 247897353 247897637 -34296027 + AluSp SINE Alu 1 302 -11 411 113 0 0 chr1 247897640 247897702 -34295962 + (TA)n Simple_repeat Simple_repeat 1 62 0 4262 179 39 15 chr1 247897702 247897911 -34295753 + L1MA10 LINE L1 6070 6324 -10 560 238 77 6 chr1 247897926 247898107 -34295557 - L1MD3 LINE L1 -144 7851 7658 180 77 0 0 chr1 247898166 247898192 -34295472 + (CA)n Simple_repeat Simple_repeat 1 26 0 1624 89 36 9 chr1 247898396 247898620 -34295044 + MER30 DNA MER1_type 1 230 0 413 313 83 19 chr1 247899587 247899989 -34293675 + L1MC/D LINE L1 5120 5543 -748 1841 158 22 86 chr1 247901642 247902059 -34291605 - MLT1B LTR MaLR 0 390 1 2466 212 66 41 chr1 247902120 247902926 -34290738 + L1MC4a LINE L1 6862 7687 -121 467 226 17 0 chr1 247902981 247903096 -34290568 + L1MD3 LINE L1 7852 7968 -27 1730 250 83 46 chr1 247904713 247905317 -34288347 + MLT1E2 LTR MaLR 1 626 0 243 0 0 0 chr1 247906755 247906782 -34286882 + (A)n Simple_repeat Simple_repeat 1 27 0 362 282 126 17 chr1 247906845 247907019 -34286645 - MIR SINE MIR -4 258 66 339 320 33 26 chr1 247907473 247907626 -34286038 + MIR SINE MIR 57 210 -52 23 0 0 0 chr1 247908395 247908418 -34285246 + AT_rich Low_complexity Low_complexity 1 23 0 14228 131 40 9 chr1 247908482 247908605 -34285059 - Tigger1 DNA MER2_type 0 2418 2300 2441 86 3 0 chr1 247908605 247908907 -34284757 + AluSp SINE Alu 1 303 -10 14228 131 40 9 chr1 247908907 247911129 -34282535 - Tigger1 DNA MER2_type -118 2300 1 280 309 11 32 chr1 247911234 247911328 -34282336 + L2 LINE L2 2992 3083 -189 236 324 143 0 chr1 247911859 247911964 -34281700 + L2 LINE L2 2632 2751 -563 204 315 0 0 chr1 247912742 247912796 -34280868 + MIR SINE MIR 188 241 -21 2141 122 6 6 chr1 247912965 247913277 -34280387 + AluSx SINE Alu 1 312 0 1462 187 31 121 chr1 247914506 247915019 -34278645 - MLT1C LTR MaLR 0 467 1 715 260 151 22 chr1 247915019 247915328 -34278336 + MLT1I LTR MaLR 61 409 0 318 319 89 79 chr1 247916165 247916682 -34276982 + L1PBb LINE L1 10 531 -6318 3037 226 49 96 chr1 247917258 247918003 -34275661 + L1PBb LINE L1 1040 1819 -5029 2010 138 0 40 chr1 247918003 247918328 -34275336 + AluSx SINE Alu 1 312 0 3037 226 49 96 chr1 247918328 247919097 -34274567 + L1PBb LINE L1 1819 2558 -4290 866 144 0 15 chr1 247919097 247919229 -34274435 + FLAM_C SINE Alu 1 130 -3 3037 226 49 96 chr1 247919229 247919611 -34274053 + L1PBb LINE L1 2558 2957 -3891 378 196 10 10 chr1 247919610 247919712 -34273952 + L1 LINE L1 4007 4108 -2740 * 561 111 33 0 chr1 247919721 247919811 -34273853 - L1PA15-16 LINE L1 -4600 2249 2157 7566 196 17 31 chr1 247919827 247920054 -34273610 + L1 LINE L1 4167 4396 -2467 1063 80 0 37 chr1 247920054 247920241 -34273423 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 7566 196 17 31 chr1 247920241 247921958 -34271706 + L1 LINE L1 4396 6083 -780 4056 180 4 6 chr1 247921969 247922762 -34270902 + L1PA16 LINE L1 5352 6142 -24 991 306 75 62 chr1 247924817 247925812 -34267852 + ERVL LTR ERVL 2117 3124 -2640 505 293 60 26 chr1 247925983 247925996 -34267668 + ERVL LTR ERVL 3327 3338 -2426 2329 74 27 18 chr1 247925996 247926333 -34267331 + L1PA10 LINE L1 5828 6167 -1 505 293 60 26 chr1 247926333 247926585 -34267079 + ERVL LTR ERVL 3338 3601 -2163 444 338 14 9 chr1 247926628 247926847 -34266817 + ERVL LTR ERVL 4531 4750 -1014 267 250 56 0 chr1 247927054 247927126 -34266538 - L2 LINE L2 -15 3298 3223 254 344 70 0 chr1 247928329 247928486 -34265178 + L2 LINE L2 2891 3058 -214 545 285 37 27 chr1 247930106 247930180 -34263484 + L1ME4a LINE L1 5584 5656 -465 3642 65 8 4 chr1 247930180 247930655 -34263009 + L1PA6 LINE L1 5677 6153 -1 545 285 37 27 chr1 247930655 247930878 -34262786 + L1ME4a LINE L1 5656 5884 -237 1177 125 14 0 chr1 247931013 247931220 -34262444 + LTR26B LTR ERV1 1 292 -330 10473 68 7 6 chr1 247931316 247933473 -34260191 - L1PA6 LINE L1 -5 6149 3982 545 285 37 27 chr1 247934409 247934483 -34259181 + L1ME4a LINE L1 5584 5656 -465 3642 65 8 4 chr1 247934483 247934958 -34258706 + L1PA6 LINE L1 5677 6153 -1 545 285 37 27 chr1 247934958 247935181 -34258483 + L1ME4a LINE L1 5656 5884 -237 1177 125 14 0 chr1 247935316 247935523 -34258141 + LTR26B LTR ERV1 1 292 -330 6973 57 15 0 chr1 247935619 247936697 -34256967 - L1PA6 LINE L1 -5 6149 5063 578 123 38 0 chr1 247936797 247937015 -34256649 + (TATAA)n Simple_repeat Simple_repeat 1 226 0 291 87 87 22 chr1 247937020 247937158 -34256506 + (TA)n Simple_repeat Simple_repeat 1 147 0 2622 101 43 0 chr1 247937158 247937553 -34256111 - MLT2A2 LTR ERVL -41 412 1 2173 145 80 40 chr1 247937611 247938060 -34255604 + MLT1C LTR MaLR 1 467 0 2195 156 13 30 chr1 247939011 247939408 -34254256 + MLT1B LTR MaLR 1 390 0 949 287 66 53 chr1 247939780 247940434 -34253230 - L2 LINE L2 -1 3312 2631 256 237 0 26 chr1 247940642 247940718 -34252946 + C-rich Low_complexity Low_complexity 4 77 0 334 313 155 74 chr1 247940734 247941065 -34252599 - L1M2 LINE L1 -5657 1192 889 2353 100 140 9 chr1 247941065 247941486 -34252178 - SVA Other Other -518 868 393 334 313 155 74 chr1 247941486 247941735 -34251929 - L1M2 LINE L1 -5960 889 565 215 368 47 0 chr1 247943042 247943148 -34250516 + L2 LINE L2 2207 2317 -997 316 253 25 43 chr1 247943158 247943320 -34250344 - LTR41 LTR ERVL -7 766 608 558 228 37 58 chr1 247943550 247943739 -34249925 - LTR41 LTR ERVL -588 185 1 200 364 25 17 chr1 247943808 247943926 -34249738 + L2 LINE L2 2397 2515 -799 246 234 11 21 chr1 247944517 247944611 -34249053 - Charlie7 DNA MER1_type -51 2561 2469 242 322 98 56 chr1 247944920 247945063 -34248601 + MIR3 SINE MIR 3 151 -57 213 352 86 19 chr1 247945264 247945369 -34248295 - L3 LINE CR1 -59 1518 1407 322 366 31 19 chr1 247945464 247945625 -34248039 - L3 LINE CR1 -301 1276 1114 270 227 27 27 chr1 247947910 247947985 -34245679 + MER39 LTR ERV1 633 707 0 1010 219 156 17 chr1 247948010 247948312 -34245352 - MER39 LTR ERV1 -104 603 260 566 200 64 0 chr1 247948289 247948414 -34245250 - MER39 LTR ERV1 -574 133 1 * 290 353 48 11 chr1 247949017 247949204 -34244460 + MIR SINE MIR 14 207 -55 367 311 84 0 chr1 247949833 247949952 -34243712 - HERVL LTR ERVL -2572 3082 2954 9179 33 6 0 chr1 247949952 247951153 -34242511 - L1PA4 LINE L1 -689 5466 4261 4498 40 5 9 chr1 247951153 247951710 -34241954 + L1PA4 LINE L1 5462 6016 -139 4000 79 37 60 chr1 247952044 247952666 -34240998 - LTR66 LTR ERVL -2 608 1 22 35 0 0 chr1 247953111 247953140 -34240524 + AT_rich Low_complexity Low_complexity 1 29 0 383 334 122 45 chr1 247953942 247954253 -34239411 + L2 LINE L2 2291 2625 -689 312 367 89 48 chr1 247954262 247954510 -34239154 + L2 LINE L2 2930 3187 -85 763 319 28 22 chr1 247955017 247955521 -34238143 + L1ME2 LINE L1 3472 3978 -2168 403 322 120 19 chr1 247955523 247955781 -34237883 + MLT1J LTR MaLR 1 284 -227 588 287 145 42 chr1 247955922 247956487 -34237177 + L1ME2 LINE L1 3916 4538 -1608 229 245 0 0 chr1 247956530 247956583 -34237081 + L1MC4 LINE L1 6649 6701 -1341 966 268 76 40 chr1 247956592 247957267 -34236397 + L1ME2 LINE L1 4576 5274 -872 639 313 50 15 chr1 247957483 247957920 -34235744 + L1ME2 LINE L1 5482 5952 -212 2267 165 43 21 chr1 247958615 247958841 -34234823 - MSTA LTR MaLR -1 427 186 330 45 0 0 chr1 247958841 247958885 -34234779 + (GA)n Simple_repeat Simple_repeat 1 44 0 2267 165 43 21 chr1 247958885 247959076 -34234588 - MSTA LTR MaLR -242 186 1 2870 178 38 38 chr1 247959132 247959744 -34233920 + LTR9 LTR ERV1 1 612 0 219 298 124 91 chr1 247960752 247961091 -34232573 + L2 LINE L2 1864 2213 -1101 5997 40 24 24 chr1 247961125 247961877 -34231787 - SVA Other Other 0 1386 635 954 47 0 8 chr1 247961996 247962124 -34231540 + L1PA4 LINE L1 6026 6152 -3 1326 348 74 38 chr1 247962193 247963415 -34230249 - HERVL LTR ERVL -2751 2903 1638 4056 195 50 6 chr1 247963420 247964687 -34228977 + L1MB7 LINE L1 4862 6181 -3 461 333 30 0 chr1 247964706 247964871 -34228793 - HERVL LTR ERVL -4103 1661 1492 830 108 0 0 chr1 247965538 247965649 -34228015 + AluY SINE Alu 166 276 -35 40 0 0 0 chr1 247965695 247965735 -34227929 + AT_rich Low_complexity Low_complexity 1 40 0 654 298 53 29 chr1 247966020 247966265 -34227399 - LTR16C LTR ERVL -10 481 231 323 365 0 0 chr1 247966595 247966680 -34226984 + L2 LINE L2 3143 3227 -45 21 36 0 0 chr1 247966754 247966782 -34226882 + AT_rich Low_complexity Low_complexity 1 28 0 243 211 0 0 chr1 247966811 247966863 -34226801 + L2 LINE L2 3262 3313 0 294 169 0 0 chr1 247967137 247967202 -34226462 + (CA)n Simple_repeat Simple_repeat 2 66 0 25 65 0 0 chr1 247967281 247967327 -34226337 + AT_rich Low_complexity Low_complexity 1 46 0 314 327 127 90 chr1 247967505 247967805 -34225859 + L2 LINE L2 2938 3248 -24 352 320 49 35 chr1 247967838 247968122 -34225542 + L2 LINE L2 2816 3103 -169 219 88 0 0 chr1 247968393 247968427 -34225237 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 6470 98 7 3 chr1 247968427 247969851 -34223813 - L1PA10 LINE L1 -21 6147 4718 204 302 141 13 chr1 247970140 247970289 -34223375 + MIR SINE MIR 85 252 -10 2441 70 3 0 chr1 247970432 247970730 -34222934 - AluY SINE Alu -12 299 1 464 70 127 0 chr1 247970911 247970982 -34222682 - MADE1 DNA Mariner 0 80 1 1851 279 89 34 chr1 247971499 247972560 -34221104 - L2 LINE L2 -5 3308 2182 237 33 0 0 chr1 247973077 247973107 -34220557 + (T)n Simple_repeat Simple_repeat 1 30 0 7189 127 10 10 chr1 247973326 247975394 -34218270 + L1MA1 LINE L1 4235 6302 0 305 284 67 8 chr1 247975623 247975757 -34217907 - L1MC/D LINE L1 -1976 5832 5691 303 269 35 3 chr1 247975796 247975899 -34217765 - L1MC/D LINE L1 -742 5561 5483 309 344 11 0 chr1 247976434 247976527 -34217137 - MIR SINE MIR -110 152 59 529 258 32 13 chr1 247976717 247976872 -34216792 + MER117 DNA MER1_type 1 158 -39 348 200 163 0 chr1 247977109 247977189 -34216475 + L2 LINE L2 3220 3312 -1 238 260 208 0 chr1 247977490 247977567 -34216097 + L2 LINE L2 3141 3233 -39 373 248 21 71 chr1 247979186 247979241 -34214423 + MER94 DNA DNA 1 57 -77 2241 114 0 3 chr1 247979241 247979539 -34214125 + AluSg SINE Alu 5 301 -9 373 248 21 71 chr1 247979539 247979624 -34214040 + MER94 DNA DNA 57 134 0 2016 121 14 0 chr1 247979832 247980121 -34213543 + AluSc SINE Alu 16 308 -1 862 297 111 42 chr1 247981224 247981729 -34211935 - MLT1H LTR MaLR -2 547 8 426 299 16 21 chr1 247981734 247981928 -34211736 - L1MDa LINE L1 -3568 2814 2622 1160 126 51 11 chr1 247982069 247982244 -34211420 + AluSx SINE Alu 1 182 -130 260 201 75 42 chr1 247982245 247982346 -34211318 - L1MDa LINE L1 -4634 1748 1666 315 403 48 9 chr1 247982378 247982609 -34211055 - L1MDa LINE L1 -4895 1489 1250 222 91 0 0 chr1 247982953 247982986 -34210678 + (TG)n Simple_repeat Simple_repeat 1 33 0 188 303 57 0 chr1 247984429 247984507 -34209157 - MIR SINE MIR -80 128 46 1602 209 30 41 chr1 247984637 247985006 -34208658 + MLT1A1 LTR MaLR 1 365 0 238 77 26 0 chr1 247987453 247987492 -34206172 + MADE1 DNA Mariner 1 40 -40 184 20 59 59 chr1 247989084 247989135 -34204529 + (CTATT)n Simple_repeat Simple_repeat 5 55 0 318 340 0 53 chr1 247990001 247990151 -34203513 + MIR SINE MIR 58 199 -63 308 208 0 42 chr1 247991378 247991450 -34202214 - LTR40a LTR ERVL -1 518 450 189 182 0 0 chr1 247991456 247991511 -34202153 + (TA)n Simple_repeat Simple_repeat 2 56 0 262 322 74 8 chr1 247991559 247991680 -34201984 - LTR40a LTR ERVL -147 372 244 251 175 193 79 chr1 247991893 247992007 -34201657 - LTR40b LTR ERVL -335 127 1 1362 191 66 31 chr1 247993014 247993302 -34200362 + AluJo SINE Alu 1 298 -14 314 273 27 36 chr1 247993629 247993739 -34199925 + LTR67 LTR ERVL 113 221 -336 279 0 0 0 chr1 247994143 247994174 -34199490 + (CA)n Simple_repeat Simple_repeat 2 32 0 516 202 58 64 chr1 247995083 247995256 -34198408 + L2 LINE L2 3142 3313 0 4851 177 19 13 chr1 247995750 247996809 -34196855 + L1MB5 LINE L1 5103 6166 -8 706 234 43 21 chr1 247996962 247997150 -34196514 - L2 LINE L2 -7 3306 3115 1304 276 75 26 chr1 247997200 247997703 -34195961 - L2 LINE L2 -1119 2195 1668 298 294 171 0 chr1 247997998 247998144 -34195520 + MIR SINE MIR 91 261 -1 516 244 0 0 chr1 247998495 247998659 -34195005 + (TG)n Simple_repeat Simple_repeat 2 165 0 1006 188 0 0 chr1 247999525 247999685 -34193979 + AluJo SINE Alu 123 282 -30 189 74 0 0 chr1 247999688 247999715 -34193949 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 698 299 41 41 chr1 247999961 248000279 -34193385 - LTR16A LTR ERVL 0 450 133 710 327 111 34 chr1 248001015 248001635 -34192029 + L2 LINE L2 1917 2584 -730 273 128 0 0 chr1 248002096 248002135 -34191529 - MADE1 DNA Mariner -41 39 1 3064 149 30 24 chr1 248002384 248002677 -34190987 - MER34B LTR ERV1 -18 547 248 2329 91 0 10 chr1 248002677 248002984 -34190680 - AluY SINE Alu -7 304 1 3064 149 30 24 chr1 248002984 248003233 -34190431 - MER34B LTR ERV1 -317 248 2 202 241 133 0 chr1 248005033 248005116 -34188548 + MIR SINE MIR 62 155 -107 2418 78 0 0 chr1 248006624 248006918 -34186746 - AluY SINE Alu -17 294 1 707 281 72 14 chr1 248007338 248007559 -34186105 + MIR SINE MIR 19 252 -10 193 304 18 0 chr1 248008371 248008427 -34185237 + MIR SINE MIR 9 65 -197 428 322 122 32 chr1 248008571 248009040 -34184624 + L2 LINE L2 2703 3292 -21 32 75 0 0 chr1 248009044 248009111 -34184553 + AT_rich Low_complexity Low_complexity 1 67 0 414 301 134 11 chr1 248009617 248009806 -34183858 + MIR SINE MIR 21 235 -27 348 43 0 0 chr1 248010844 248010890 -34182774 + (TTA)n Simple_repeat Simple_repeat 3 48 0 8506 25 0 0 chr1 248010890 248012645 -34181019 - L1PA3 LINE L1 -18 6137 4384 1540 28 0 0 chr1 248012645 248012823 -34180841 + L1P LINE L1 4057 4234 -1912 592 301 46 21 chr1 248013252 248013491 -34180173 - MIR SINE MIR 0 262 18 1241 61 30 0 chr1 248013783 248013948 -34179716 - L1PA7 LINE L1 -4 6150 5981 242 238 0 0 chr1 248014647 248014710 -34178954 + L1MC4 LINE L1 6640 6702 -1340 * 250 167 0 0 chr1 248014687 248014729 -34178935 - L1MC4 LINE L1 -1339 6703 6662 871 279 113 38 chr1 248014851 248015195 -34178469 + MLT1K LTR MaLR 149 518 -70 185 256 0 47 chr1 248015243 248015286 -34178378 + MIR SINE MIR 111 151 -57 229 189 38 0 chr1 248018460 248018529 -34175135 + (TA)n Simple_repeat Simple_repeat 1 71 0 1574 114 25 29 chr1 248018547 248018820 -34174844 - AluSg SINE Alu 0 310 39 883 129 0 0 chr1 248018830 248018954 -34174710 - AluJb SINE Alu -188 124 1 497 326 62 37 chr1 248019484 248019726 -34173938 - MIR SINE MIR -7 255 8 2172 113 0 0 chr1 248019772 248020055 -34173609 + AluSx SINE Alu 4 286 -26 185 0 40 0 chr1 248020058 248020083 -34173581 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 192 149 30 45 chr1 248020810 248020877 -34172787 + CT-rich Low_complexity Low_complexity 4 69 0 2114 118 7 3 chr1 248020882 248021179 -34172485 - AluSx SINE Alu -14 298 1 2208 97 3 17 chr1 248022022 248022321 -34171343 + AluSg SINE Alu 1 295 -15 200 35 35 0 chr1 248022668 248022697 -34170967 + (TC)n Simple_repeat Simple_repeat 1 30 0 273 305 86 31 chr1 248023006 248023134 -34170530 + MIR3 SINE MIR 70 204 -4 663 308 163 18 chr1 248023263 248023711 -34169953 + L2 LINE L2 1917 2429 -885 21 71 0 0 chr1 248023944 248023986 -34169678 + AT_rich Low_complexity Low_complexity 1 42 0 347 329 101 24 chr1 248024002 248024330 -34169334 + L1ME LINE L1 5463 5815 -306 967 232 73 41 chr1 248025275 248025705 -34167959 - MER39 LTR ERV1 -2 646 92 355 181 84 170 chr1 248025682 248025855 -34167809 - MER34 LTR ERV1 -408 157 1 * 2228 114 7 0 chr1 248026860 248027167 -34166497 - AluSc SINE Alu 0 309 1 225 0 0 0 chr1 248027172 248027197 -34166467 + (T)n Simple_repeat Simple_repeat 1 25 0 428 342 107 8 chr1 248028958 248029073 -34164591 - MIR SINE MIR 0 262 160 3759 143 12 66 chr1 248029073 248029803 -34163861 - LTR8 LTR ERV1 0 691 1 428 342 107 8 chr1 248029803 248029921 -34163743 - MIR SINE MIR -102 160 6 21 57 0 0 chr1 248030620 248030655 -34163009 + AT_rich Low_complexity Low_complexity 1 35 0 454 202 59 152 chr1 248030915 248031106 -34162558 + MIR SINE MIR 59 229 -33 610 293 29 78 chr1 248032311 248032618 -34161046 - MLT1K LTR MaLR -22 566 275 1819 162 10 3 chr1 248032756 248033052 -34160612 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr1 248033069 248033092 -34160572 + AT_rich Low_complexity Low_complexity 1 23 0 1762 170 58 6 chr1 248033280 248033627 -34160037 + MLT1A1 LTR MaLR 1 365 0 2274 145 18 28 chr1 248035431 248035823 -34157841 - MLT1B LTR MaLR -2 388 1 24 32 0 0 chr1 248036905 248036936 -34156728 + AT_rich Low_complexity Low_complexity 1 31 0 2493 70 0 0 chr1 248037249 248037550 -34156114 - AluY SINE Alu -10 301 1 236 304 14 0 chr1 248037792 248037861 -34155803 - L2 LINE L2 -1 3312 3243 1455 199 67 42 chr1 248038395 248038751 -34154913 + MLT1A1 LTR MaLR 1 365 0 1543 165 102 6 chr1 248039368 248039701 -34153963 - MLT1A1 LTR MaLR 0 365 1 30 0 0 0 chr1 248040214 248040244 -34153420 + AT_rich Low_complexity Low_complexity 1 30 0 2004 144 3 3 chr1 248040262 248040575 -34153089 - L1PB1 LINE L1 -21 6130 5818 206 339 71 18 chr1 248041904 248042016 -34151648 - MIR SINE MIR -111 151 34 1911 191 84 23 chr1 248042260 248042690 -34150974 - LTR40b LTR ERVL 0 462 7 2097 242 47 8 chr1 248042973 248043461 -34150203 - LTR40a LTR ERVL -12 507 1 230 271 51 0 chr1 248043845 248043904 -34149760 + L2 LINE L2 3235 3296 -17 23 0 0 0 chr1 248044183 248044206 -34149458 + AT_rich Low_complexity Low_complexity 1 23 0 253 364 11 0 chr1 248044526 248044614 -34149050 + LTR67 LTR ERVL 125 213 -344 409 301 104 16 chr1 248044729 248044922 -34148742 + LTR67 LTR ERVL 348 557 0 209 316 8 68 chr1 248045558 248045691 -34147973 + MIR SINE MIR 28 152 -110 2320 82 17 0 chr1 248045691 248045985 -34147679 - AluSp SINE Alu -14 299 1 5967 174 19 2 chr1 248045998 248047134 -34146530 - L1MC1 LINE L1 0 6333 5180 1924 169 19 78 chr1 248048236 248048657 -34145007 - MSTD LTR MaLR 0 396 1 180 350 0 0 chr1 248049054 248049134 -34144530 + L3b LINE CR1 1116 1195 -388 461 245 147 12 chr1 248049875 248050038 -34143626 + MIR SINE MIR 78 262 0 2171 117 3 16 chr1 248050540 248050856 -34142808 + AluSx SINE Alu 1 312 0 359 339 8 8 chr1 248051725 248051855 -34141809 - MIR SINE MIR -127 135 6 368 291 193 28 chr1 248053288 248053573 -34140091 + L2 LINE L2 2453 2784 -530 318 276 73 32 chr1 248053902 248054025 -34139639 + L2 LINE L2 3137 3264 -8 355 343 9 9 chr1 248057007 248057115 -34136549 - L2 LINE L2 0 3272 3165 698 256 18 62 chr1 248057450 248057677 -34135987 + MIR SINE MIR 28 244 -18 832 181 66 0 chr1 248059923 248060089 -34133575 + MER20 DNA MER1_type 43 219 0 2233 136 43 5 chr1 248060530 248060906 -34132758 + MLT1B LTR MaLR 1 390 0 1101 156 22 11 chr1 248061143 248061322 -34132342 + MER5A DNA MER1_type 2 182 -7 224 257 149 0 chr1 248061926 248062000 -34131664 - MIR SINE MIR -80 182 98 2250 135 6 6 chr1 248062059 248062414 -34131250 + THE1A LTR MaLR 1 355 0 11050 91 25 13 chr1 248062414 248063882 -34129782 + THE1A-int LTR MaLR 1 1491 -89 2281 83 0 20 chr1 248063882 248064183 -34129481 - AluY SINE Alu -16 295 1 11050 91 25 13 chr1 248064183 248064275 -34129389 + THE1A-int LTR MaLR 1491 1580 0 2435 103 8 8 chr1 248064279 248064630 -34129034 + THE1A LTR MaLR 5 355 0 198 103 0 0 chr1 248065309 248065338 -34128326 + (TG)n Simple_repeat Simple_repeat 2 30 0 466 276 22 41 chr1 248065837 248066105 -34127559 + HAL1 LINE L1 1131 1393 -1114 307 303 85 85 chr1 248066192 248066463 -34127201 + HAL1 LINE L1 1541 1811 -696 937 194 23 14 chr1 248066831 248067047 -34126617 - L1PA13 LINE L1 -4 6159 5942 2565 275 99 38 chr1 248067075 248068328 -34125336 + L2 LINE L2 1981 3309 -4 1472 223 30 17 chr1 248068549 248068850 -34124814 - AluJb SINE Alu -3 309 5 440 248 10 10 chr1 248069016 248069117 -34124547 + MER5A DNA MER1_type 18 118 -71 265 290 43 11 chr1 248069117 248069210 -34124454 + L2 LINE L2 419 514 -2800 207 100 0 0 chr1 248069228 248069258 -34124406 + (CAT)n Simple_repeat Simple_repeat 1 30 0 2986 283 116 37 chr1 248069335 248070638 -34123026 + L2 LINE L2 1682 3117 -196 2004 147 7 3 chr1 248070638 248070944 -34122720 - AluSx SINE Alu -5 307 1 2986 283 116 37 chr1 248070944 248071149 -34122515 + L2 LINE L2 3117 3304 -9 1564 196 138 0 chr1 248071552 248071899 -34121765 + MSTD LTR MaLR 2 396 0 487 193 35 21 chr1 248073154 248073299 -34120365 + MER96B DNA MER1_type? 77 223 -194 674 234 34 39 chr1 248073408 248073613 -34120051 - MIR SINE MIR -2 260 57 2923 123 0 63 chr1 248074031 248074632 -34119032 + MER1A DNA MER1_type 3 529 0 224 232 0 0 chr1 248075296 248075352 -34118312 + A-rich Low_complexity Low_complexity 1 56 0 264 246 0 31 chr1 248075925 248075990 -34117674 + MIR SINE MIR 65 127 -81 231 245 21 106 chr1 248076069 248076163 -34117501 - L2 LINE L2 0 3272 3187 2076 120 0 0 chr1 248076826 248077169 -34116495 + AluSq SINE Alu 1 343 0 364 229 28 71 chr1 248077659 248077815 -34115849 - MIR SINE MIR -62 146 50 202 288 0 17 chr1 248077810 248077869 -34115795 - L2 LINE L2 -4 3309 3252 * 1025 121 0 0 chr1 248078308 248078457 -34115207 - AluSp/q SINE Alu -9 304 156 2155 125 6 10 chr1 248078701 248079014 -34114650 + AluSx SINE Alu 1 312 0 290 286 8 8 chr1 248079151 248079277 -34114387 + (TA)n Simple_repeat Simple_repeat 1 126 0 269 325 26 32 chr1 248079279 248079433 -34114231 - LTR16C LTR ERVL 0 491 339 429 245 98 0 chr1 248080949 248081092 -34112572 + Charlie8 DNA MER1_type 92 248 -2169 433 299 122 65 chr1 248081616 248082034 -34111630 + MLT1H LTR MaLR 108 549 0 2026 137 0 7 chr1 248083088 248083425 -34110239 - AluSx SINE Alu 0 312 1 231 244 0 0 chr1 248083696 248083737 -34109927 + L2 LINE L2 3255 3295 -18 201 175 0 0 chr1 248084410 248084450 -34109214 + (TG)n Simple_repeat Simple_repeat 1 40 0 192 77 0 0 chr1 248084887 248084913 -34108751 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 239 148 0 56 chr1 248086597 248086651 -34107013 + L2 LINE L2 3263 3313 0 369 0 0 0 chr1 248086924 248086965 -34106699 + (TA)n Simple_repeat Simple_repeat 2 42 0 1098 135 0 0 chr1 248086976 248087154 -34106510 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 89 0 0 chr1 248087743 248087799 -34105865 + AT_rich Low_complexity Low_complexity 1 56 0 224 273 106 0 chr1 248088261 248088327 -34105337 + L3 LINE CR1 1377 1449 -128 493 278 101 27 chr1 248088344 248088579 -34105085 + MIR SINE MIR 11 257 -5 211 314 0 29 chr1 248088560 248088630 -34105034 + L3 LINE CR1 1508 1575 -2 * 402 21 0 0 chr1 248090787 248090834 -34102830 + (TG)n Simple_repeat Simple_repeat 2 48 0 213 203 27 14 chr1 248090874 248090948 -34102716 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 2477 195 63 75 chr1 248090963 248091225 -34102439 - L1ME1 LINE L1 -18 6148 5884 1816 149 10 7 chr1 248091225 248091520 -34102144 - AluJo SINE Alu -16 296 1 2357 76 0 10 chr1 248091530 248091834 -34101830 - AluSc SINE Alu -8 301 1 2477 195 63 75 chr1 248091834 248092389 -34101275 - L1ME1 LINE L1 -291 5875 5330 1334 138 4 52 chr1 248092390 248092621 -34101043 - AluJo SINE Alu -3 309 90 2966 263 44 57 chr1 248092641 248094353 -34099311 - L1ME1 LINE L1 -824 5322 3632 247 297 165 0 chr1 248094915 248095006 -34098658 + MIR SINE MIR 3 108 -154 355 349 193 0 chr1 248095810 248096002 -34097662 + L1MEd LINE L1 544 772 -5347 383 242 72 24 chr1 248096005 248096171 -34097493 + L1MEd LINE L1 945 1098 -5021 5677 138 33 5 chr1 248096186 248097750 -34095914 + L1MA8 LINE L1 4682 6284 -7 232 169 0 96 chr1 248097992 248098075 -34095589 + L1MC4a LINE L1 6597 6671 -1137 595 204 55 84 chr1 248098113 248098422 -34095242 + L1MC5 LINE L1 6676 6975 -986 614 317 60 30 chr1 248098541 248098841 -34094823 - L2 LINE L2 -424 2890 2582 343 273 70 123 chr1 248100023 248100312 -34093352 - MARNA DNA Mariner -177 409 143 1660 191 10 10 chr1 248100312 248100615 -34093049 - AluSx SINE Alu -9 303 1 343 273 70 123 chr1 248100615 248100699 -34092965 - MARNA DNA Mariner -443 143 56 26 50 0 0 chr1 248100882 248100922 -34092742 + AT_rich Low_complexity Low_complexity 1 40 0 2391 209 16 20 chr1 248101177 248101429 -34092235 + MLT2B3 LTR ERVL 1 252 -302 2456 51 0 13 chr1 248101429 248101740 -34091924 - AluY SINE Alu -4 307 1 2391 209 16 20 chr1 248101740 248101998 -34091666 + MLT2B3 LTR ERVL 252 517 -37 341 74 0 19 chr1 248101998 248102052 -34091612 + (TCTA)n Simple_repeat Simple_repeat 3 55 0 2391 209 16 20 chr1 248102052 248102083 -34091581 + MLT2B3 LTR ERVL 517 547 -7 189 0 0 0 chr1 248104589 248104610 -34089054 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr1 248104837 248104857 -34088807 + (T)n Simple_repeat Simple_repeat 1 20 0 558 330 53 18 chr1 248104957 248105184 -34088480 + MIR SINE MIR 15 249 -13 941 306 110 19 chr1 248105535 248106127 -34087537 - L1MC4a LINE L1 -1897 5911 5266 433 296 116 29 chr1 248106291 248106636 -34087028 - L1MC4a LINE L1 -1129 5017 4643 21 0 0 0 chr1 248106764 248106785 -34086879 + AT_rich Low_complexity Low_complexity 1 21 0 406 318 80 39 chr1 248107013 248107551 -34086113 - L1MC4a LINE L1 -1870 4276 3717 469 286 63 63 chr1 248107831 248107996 -34085668 - L1MC4a LINE L1 -2779 3367 3203 2227 102 7 0 chr1 248107996 248108323 -34085341 + AluSq SINE Alu 1 313 0 469 286 63 63 chr1 248108323 248108535 -34085129 - L1MC4a LINE L1 -2942 3204 2990 978 225 44 24 chr1 248108555 248108848 -34084816 - L1ME2 LINE L1 -22 6142 5844 2498 157 52 33 chr1 248108851 248109372 -34084292 - L1MC1 LINE L1 -5 6608 6078 255 171 27 14 chr1 248109401 248109547 -34084117 + (TA)n Simple_repeat Simple_repeat 2 149 0 24 0 0 0 chr1 248109574 248109598 -34084066 + AT_rich Low_complexity Low_complexity 1 24 0 284 185 31 0 chr1 248109624 248109689 -34083975 + L1MC1 LINE L1 5853 5919 -414 * 3781 191 43 30 chr1 248109660 248110433 -34083231 - L1MC1 LINE L1 -524 6089 5328 1892 151 0 39 chr1 248110433 248110738 -34082926 - AluJb SINE Alu -19 293 1 3781 191 43 30 chr1 248110738 248111376 -34082288 - L1MC1 LINE L1 -1285 5328 4657 662 213 198 0 chr1 248111376 248111573 -34082091 + MER46A DNA MER2_type 1 236 0 3781 191 43 30 chr1 248111573 248111720 -34081944 - L1MC1 LINE L1 -1956 4657 4513 8928 151 118 52 chr1 248111722 248112019 -34081645 - L1MC1 LINE L1 -4169 2257 1981 1798 166 7 7 chr1 248112019 248112321 -34081343 + AluJo SINE Alu 4 305 -7 8928 151 118 52 chr1 248112321 248114122 -34079542 - L1MC1 LINE L1 -4445 1981 21 1218 253 35 19 chr1 248114139 248114510 -34079154 - L1ME2 LINE L1 -331 5833 5457 636 257 12 6 chr1 248114507 248114678 -34078986 - L1ME2 LINE L1 -1213 4933 4762 * 3429 259 65 13 chr1 248114680 248115795 -34077869 - L1MC3 LINE L1 -1125 6660 5487 4155 258 60 45 chr1 248115804 248117810 -34075854 - L1MC3 LINE L1 -854 5292 3256 339 345 48 0 chr1 248120011 248120156 -34073508 + MIR SINE MIR 25 176 -86 558 299 13 13 chr1 248120160 248120317 -34073347 - MIR SINE MIR -75 187 31 234 281 0 45 chr1 248120346 248120435 -34073229 + MIR SINE MIR 63 147 -115 207 263 12 75 chr1 248120564 248120644 -34073020 + MIR SINE MIR 50 124 -84 655 290 23 0 chr1 248121085 248121261 -34072403 + MIR SINE MIR 62 241 -21 2253 135 3 3 chr1 248121715 248122048 -34071616 - THE1B LTR MaLR 0 364 32 4026 142 20 8 chr1 248123008 248123713 -34069951 + L1MB3 LINE L1 5463 6175 -8 328 288 93 44 chr1 248123817 248124043 -34069621 + HAL1 LINE L1 1151 1387 -1120 223 224 86 0 chr1 248124358 248124416 -34069248 + MIR SINE MIR 95 157 -105 312 27 0 0 chr1 248124681 248124718 -34068946 + (TG)n Simple_repeat Simple_repeat 1 37 0 2275 64 0 49 chr1 248124779 248125106 -34068558 + AluY SINE Alu 1 311 0 24 0 0 0 chr1 248125576 248125600 -34068064 + AT_rich Low_complexity Low_complexity 1 24 0 603 261 28 68 chr1 248127142 248127421 -34066243 - MIR SINE MIR -14 248 15 277 340 53 0 chr1 248128588 248128682 -34064982 + MER91 DNA MER1_type 43 141 -55 3336 216 45 20 chr1 248128692 248130206 -34063458 - L1MD2 LINE L1 -496 5863 4318 388 312 8 16 chr1 248130288 248130413 -34063251 - L2 LINE L2 -6 3307 3184 1850 227 57 62 chr1 248130701 248130963 -34062701 - MER90 LTR ERV1 0 575 313 732 247 48 0 chr1 248130963 248131129 -34062535 - FAM SINE Alu 0 175 2 1850 227 57 62 chr1 248131129 248131444 -34062220 - MER90 LTR ERV1 -262 313 1 535 342 53 22 chr1 248131453 248131780 -34061884 - L2 LINE L2 -250 3063 2729 640 246 57 75 chr1 248131871 248132152 -34061512 - L2 LINE L2 0 3313 3038 636 326 95 25 chr1 248132149 248132397 -34061267 - L2 LINE L2 -546 2768 2484 * 950 184 73 10 chr1 248132397 248132603 -34061061 + MER20 DNA MER1_type 1 219 0 636 326 95 25 chr1 248132603 248132722 -34060942 - L2 LINE L2 -830 2484 2375 309 115 19 0 chr1 248132981 248133033 -34060631 - L1PA10 LINE L1 -5 6163 6111 1793 117 0 0 chr1 248133619 248133868 -34059796 + AluSx SINE Alu 45 293 -19 2214 103 3 10 chr1 248136003 248136303 -34057361 + AluSp SINE Alu 1 298 -15 180 111 0 0 chr1 248136458 248136485 -34057179 + (A)n Simple_repeat Simple_repeat 1 27 0 811 170 0 15 chr1 248136574 248136709 -34056955 - FLAM_C SINE Alu 0 133 1 325 345 141 5 chr1 248137686 248137892 -34055772 + MIR SINE MIR 2 235 -27 220 232 18 0 chr1 248137893 248137949 -34055715 + (ATG)n Simple_repeat Simple_repeat 3 59 0 466 316 201 33 chr1 248138375 248138888 -34054776 + L2 LINE L2 2460 3069 -244 525 257 0 0 chr1 248138972 248139124 -34054540 + (TA)n Simple_repeat Simple_repeat 1 152 0 324 336 0 22 chr1 248139126 248139263 -34054401 + L2 LINE L2 3173 3306 -7 24 0 0 0 chr1 248140851 248140875 -34052789 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr1 248141701 248141722 -34051942 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 248141945 248141967 -34051697 + AT_rich Low_complexity Low_complexity 1 22 0 266 339 96 17 chr1 248143207 248143384 -34050280 - L2 LINE L2 -535 2779 2589 294 156 0 0 chr1 248144259 248144323 -34049341 + (TG)n Simple_repeat Simple_repeat 2 65 0 676 223 16 0 chr1 248145802 248145923 -34047741 + FLAM_A SINE Alu 1 123 -10 2248 87 0 0 chr1 248145925 248146224 -34047440 + L1PA7 LINE L1 5850 6148 -6 23 97 0 0 chr1 248146844 248146916 -34046748 + AT_rich Low_complexity Low_complexity 1 72 0 311 93 53 40 chr1 248147182 248147257 -34046407 + L1MA4A LINE L1 6223 6298 -5 22 0 0 0 chr1 248147264 248147286 -34046378 + AT_rich Low_complexity Low_complexity 1 22 0 1814 121 0 12 chr1 248147572 248147828 -34045836 + AluSx SINE Alu 39 291 -21 479 294 206 9 chr1 248149518 248149732 -34043932 - MIR SINE MIR 0 262 7 2516 108 0 42 chr1 248150008 248150081 -34043583 - THE1B LTR MaLR 0 364 289 2342 92 0 19 chr1 248150081 248150398 -34043266 + AluY SINE Alu 1 311 0 2516 108 0 42 chr1 248150398 248150704 -34042960 - THE1B LTR MaLR -75 289 1 27 73 0 0 chr1 248150907 248150962 -34042702 + AT_rich Low_complexity Low_complexity 1 55 0 524 214 48 0 chr1 248151892 248152037 -34041627 - MER96B DNA MER1_type? -238 179 28 1284 115 6 0 chr1 248152158 248152334 -34041330 - THE1B LTR MaLR 0 364 188 617 307 143 27 chr1 248152334 248152627 -34041037 + MER102b DNA MER1_type 1 327 -14 222 283 206 0 chr1 248152694 248152786 -34040878 - L2 LINE L2 -3 3310 3200 1666 165 55 84 chr1 248152805 248153279 -34040385 + MLT1C LTR MaLR 1 460 -7 282 370 25 39 chr1 248153398 248153601 -34040063 - L2 LINE L2 -214 3058 2859 * 365 265 202 16 chr1 248153578 248153795 -34039869 + MIR SINE MIR 8 262 0 207 319 43 43 chr1 248153826 248154011 -34039653 - L2 LINE L2 -494 2820 2636 368 302 7 40 chr1 248155400 248155549 -34038115 + L2 LINE L2 3170 3313 0 696 218 62 17 chr1 248155809 248155988 -34037676 + MER5A DNA MER1_type 1 187 -2 1662 224 70 68 chr1 248156214 248156744 -34036920 - MLT1F1 LTR MaLR 0 567 12 400 275 185 5 chr1 248156795 248157017 -34036647 - MLT1K LTR MaLR 0 588 327 248 328 134 59 chr1 248157350 248157670 -34035994 + L2 LINE L2 2565 2908 -406 1508 117 36 0 chr1 248157968 248158190 -34035474 + MER30 DNA MER1_type 1 230 0 1882 143 58 25 chr1 248158291 248158654 -34035010 - THE1C LTR MaLR 0 375 1 526 249 55 55 chr1 248158685 248158850 -34034814 - MIR SINE MIR -70 192 28 23 0 0 0 chr1 248159052 248159075 -34034589 + AT_rich Low_complexity Low_complexity 1 23 0 1136 227 52 89 chr1 248159192 248159597 -34034067 - MSTA LTR MaLR 0 428 39 1101 203 43 5 chr1 248159755 248159962 -34033702 + MER58A DNA MER1_type 4 218 -6 274 284 11 142 chr1 248160014 248160204 -34033460 + MIR SINE MIR 41 205 -57 244 250 13 40 chr1 248160371 248160447 -34033217 + Charlie4 DNA MER1_type 1888 1961 0 511 165 37 8 chr1 248160922 248161137 -34032527 + AluJo SINE Alu 3 293 -19 21 71 0 0 chr1 248161480 248161522 -34032142 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 248161919 248161940 -34031724 + AT_rich Low_complexity Low_complexity 1 21 0 1581 136 5 0 chr1 248161943 248162163 -34031501 + AluSx SINE Alu 1 221 -91 6036 146 83 10 chr1 248162804 248163951 -34029713 - Tigger3b DNA MER2_type 0 1231 1 538 310 79 13 chr1 248163998 248164227 -34029437 - HAL1b LINE L1 -731 617 374 312 239 125 0 chr1 248165752 248165840 -34027824 + MER63 DNA MER1_type 3 727 -109 1648 160 124 18 chr1 248165840 248166125 -34027539 - MSTA LTR MaLR 0 428 90 1536 83 5 0 chr1 248166125 248166317 -34027347 + AluSq SINE Alu 98 290 -23 1648 160 124 18 chr1 248166317 248166418 -34027246 - MSTA LTR MaLR -338 90 1 22 0 0 0 chr1 248166981 248167003 -34026661 + AT_rich Low_complexity Low_complexity 1 22 0 1729 255 69 11 chr1 248168934 248169483 -34024181 + L1MC4a LINE L1 7140 7823 -95 537 320 9 55 chr1 248170620 248170839 -34022825 + MIR SINE MIR 52 260 -2 203 304 135 44 chr1 248171090 248171231 -34022433 - MER5A DNA MER1_type -19 170 6 2152 131 0 10 chr1 248171416 248171728 -34021936 + AluSx SINE Alu 1 309 -3 24 24 0 24 chr1 248171913 248171936 -34021728 + AT_rich Low_complexity Low_complexity 1 24 -17 1870 159 23 3 chr1 248171936 248172238 -34021426 - AluJb SINE Alu -1 311 4 24 24 0 24 chr1 248172238 248172256 -34021408 + AT_rich Low_complexity Low_complexity 24 41 0 360 319 55 39 chr1 248174901 248175083 -34018581 - L2 LINE L2 -52 3220 3036 1692 157 50 67 chr1 248175111 248175476 -34018188 + MLT2C1 LTR ERVL 1 360 -37 279 0 0 0 chr1 248175476 248175507 -34018157 + (TG)n Simple_repeat Simple_repeat 2 32 0 1692 157 50 67 chr1 248175507 248175543 -34018121 + MLT2C1 LTR ERVL 360 395 -2 306 0 0 0 chr1 248176939 248176973 -34016691 + (CA)n Simple_repeat Simple_repeat 2 35 0 1860 149 4 0 chr1 248178089 248178370 -34015294 + AluSx SINE Alu 18 299 -13 3707 118 107 12 chr1 248179052 248179736 -34013928 - Tigger3(Golem) DNA MER2_type -33 2996 2248 360 360 0 50 chr1 248179736 248179897 -34013767 + L1MA4A LINE L1 1284 1436 -5217 1672 221 63 37 chr1 248180022 248180589 -34013075 + L1MA4A LINE L1 1438 2019 -4634 * 5406 196 55 41 chr1 248180571 248182369 -34011295 + L1MA4A LINE L1 4562 6391 -498 216 97 0 0 chr1 248182369 248182400 -34011264 + (CA)n Simple_repeat Simple_repeat 2 32 0 5406 196 55 41 chr1 248182400 248182898 -34010766 + L1MA4A LINE L1 6391 6881 -8 236 151 0 19 chr1 248182916 248182969 -34010695 + (TA)n Simple_repeat Simple_repeat 1 52 0 333 250 0 46 chr1 248182995 248183103 -34010561 - L1MC4a LINE L1 -1886 5922 5820 237 306 33 16 chr1 248183423 248183544 -34010120 - L1MC4a LINE L1 -1997 5811 5689 1147 212 4 0 chr1 248183559 248183795 -34009869 + L1MB1 LINE L1 5005 5241 -905 1284 179 128 50 chr1 248183795 248183950 -34009714 + MER2 DNA MER2_type 1 142 -203 2058 147 3 35 chr1 248183950 248184298 -34009366 + MER1B DNA MER1_type 1 337 0 1284 179 128 50 chr1 248184298 248184461 -34009203 + MER2 DNA MER2_type 142 344 -1 1906 170 32 15 chr1 248184461 248184863 -34008801 + L1MB1 LINE L1 5239 5650 -518 5359 136 29 7 chr1 248184863 248186631 -34007033 + L1PA16 LINE L1 4383 6165 -1 1906 170 32 15 chr1 248186631 248186647 -34007017 + L1MB1 LINE L1 5650 5664 -504 2448 161 29 40 chr1 248186649 248187172 -34006492 + L1MB1 LINE L1 5652 6168 0 256 302 41 18 chr1 248187174 248187343 -34006321 + L1ME4a LINE L1 5742 5914 -207 283 242 0 0 chr1 248187367 248187433 -34006231 + L2 LINE L2 3247 3312 -1 288 326 114 29 chr1 248187910 248188085 -34005579 + MIR3 SINE MIR 15 204 -4 2468 130 5 0 chr1 248189496 248189872 -34003792 + L1PA13 LINE L1 5782 6159 -4 24 32 0 0 chr1 248191327 248191358 -34002306 + AT_rich Low_complexity Low_complexity 1 31 0 239 164 60 45 chr1 248191665 248191732 -34001932 - MER116 DNA Mariner -11 69 2 21 0 0 0 chr1 248194389 248194410 -33999254 + AT_rich Low_complexity Low_complexity 1 21 0 192 247 195 0 chr1 248194459 248194536 -33999128 + L2 LINE L2 3180 3271 -1 1241 218 57 67 chr1 248195335 248195377 -33998287 + Charlie1b DNA MER1_type 37 78 -2683 1578 163 52 7 chr1 248195377 248195665 -33997999 - AluJb SINE Alu -11 301 1 1241 218 57 67 chr1 248195665 248196114 -33997550 + Charlie1b DNA MER1_type 78 523 0 2532 57 3 0 chr1 248196831 248197130 -33996534 - AluY SINE Alu -7 304 5 431 296 22 6 chr1 248197135 248197314 -33996350 + L1ME LINE L1 5602 5783 -338 363 161 36 54 chr1 248197417 248197529 -33996135 + L1ME4a LINE L1 5997 6106 -15 223 273 45 15 chr1 248197733 248197799 -33995865 + MIR SINE MIR 67 134 -74 1717 31 0 31 chr1 248199626 248199826 -33993838 + L1PA5 LINE L1 5940 6134 -20 354 23 0 0 chr1 248199826 248199869 -33993795 + (TA)n Simple_repeat Simple_repeat 1 43 0 1717 31 0 31 chr1 248199869 248199890 -33993774 + L1PA5 LINE L1 6134 6154 0 535 300 71 25 chr1 248201430 248201713 -33991951 + L2 LINE L2 2334 2629 -685 251 204 19 0 chr1 248201713 248201767 -33991897 + L2 LINE L2 2732 2786 -528 305 265 118 10 chr1 248201783 248201885 -33991779 + L2 LINE L2 3192 3304 -9 236 308 39 51 chr1 248202236 248202392 -33991272 - L2 LINE L2 -217 3055 2902 573 304 49 26 chr1 248203559 248203911 -33989753 - L2 LINE L2 -221 3092 2726 2128 232 54 81 chr1 248203980 248204718 -33988946 + MER21B LTR ERV1 1 718 -145 263 296 0 0 chr1 248204779 248204850 -33988814 - L2 LINE L2 -700 2614 2544 2466 54 0 0 chr1 248204933 248205249 -33988415 - AluY SINE Alu 0 311 2 22 35 0 0 chr1 248205252 248205281 -33988383 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr1 248205401 248205431 -33988233 + AT_rich Low_complexity Low_complexity 1 30 0 363 176 16 64 chr1 248205431 248205678 -33987986 + (TTATA)n Simple_repeat Simple_repeat 1 235 0 625 196 78 36 chr1 248205999 248206218 -33987446 + L1MC4 LINE L1 7814 8041 -1 292 336 166 36 chr1 248206270 248206823 -33986841 + L2 LINE L2 1851 2475 -839 504 294 90 60 chr1 248207185 248207206 -33986458 + L2 LINE L2 2965 2984 -288 17642 82 9 4 chr1 248207206 248210458 -33983206 - L1PA7 LINE L1 0 6154 2894 504 294 90 60 chr1 248210458 248210735 -33982929 + L2 LINE L2 2984 3272 0 507 316 142 22 chr1 248210943 248211218 -33982446 - L3 LINE CR1 -212 1365 1058 306 313 78 0 chr1 248211352 248211480 -33982184 - MIR SINE MIR -1 261 124 264 266 223 0 chr1 248211597 248211691 -33981973 - MIR SINE MIR -89 173 59 400 167 0 13 chr1 248211843 248211921 -33981743 + L2 LINE L2 2269 2345 -969 1499 264 161 19 chr1 248212501 248213354 -33980310 + L2 LINE L2 2343 3313 0 26 0 0 0 chr1 248214455 248214481 -33979183 + AT_rich Low_complexity Low_complexity 1 26 0 537 270 82 10 chr1 248214522 248214718 -33978946 + MIR SINE MIR 53 262 0 2343 103 3 0 chr1 248214749 248215059 -33978605 + AluSp SINE Alu 1 311 -2 22 0 0 0 chr1 248216632 248216654 -33977010 + AT_rich Low_complexity Low_complexity 1 22 0 320 325 24 41 chr1 248216871 248217040 -33976624 + L1M4 LINE L1 2662 2827 -3319 6289 82 21 1 chr1 248217544 248218593 -33975071 + L1PA8 LINE L1 5104 6172 0 189 200 73 0 chr1 248219003 248219058 -33974606 + L3 LINE CR1 1065 1123 -454 21 57 0 0 chr1 248219097 248219132 -33974532 + AT_rich Low_complexity Low_complexity 1 35 0 1949 144 3 31 chr1 248219338 248219657 -33974007 - AluSx SINE Alu -2 310 1 391 259 69 9 chr1 248220516 248220632 -33973032 - L2 LINE L2 -1 3312 3190 202 296 0 0 chr1 248220651 248220705 -33972959 - MIR SINE MIR -33 229 176 184 206 132 29 chr1 248220699 248220767 -33972897 + MIR3 SINE MIR 129 203 -5 * 306 50 0 0 chr1 248221611 248221651 -33972013 + (TC)n Simple_repeat Simple_repeat 1 40 0 1374 212 51 91 chr1 248221980 248222359 -33971305 - MLT1C LTR MaLR 0 467 75 1893 134 33 0 chr1 248222359 248222656 -33971008 - AluSx SINE Alu 0 306 1 1374 212 51 91 chr1 248222656 248222694 -33970970 - MLT1C LTR MaLR -392 75 68 12262 38 3 1 chr1 248222694 248224939 -33968725 - L1PA5 LINE L1 -8 6146 3890 1374 212 51 91 chr1 248224939 248225005 -33968659 - MLT1C LTR MaLR -399 68 1 23 0 0 0 chr1 248225059 248225082 -33968582 + AT_rich Low_complexity Low_complexity 1 23 0 5364 129 8 0 chr1 248225207 248226041 -33967623 - L1PA16 LINE L1 -9 6157 5317 * 18401 184 66 14 chr1 248226036 248227417 -33966247 - L1PA11 LINE L1 -1 6876 5569 255 61 0 0 chr1 248227417 248227450 -33966214 + (TA)n Simple_repeat Simple_repeat 1 33 0 18401 184 66 14 chr1 248227450 248232555 -33961109 - L1PA11 LINE L1 -1308 5569 1 2593 94 42 3 chr1 248233807 248234168 -33959496 - THE1C LTR MaLR 0 375 1 1225 202 96 7 chr1 248235487 248235759 -33957905 + AluJo SINE Alu 1 296 -6 1777 150 4 4 chr1 248236315 248236595 -33957069 - AluJo SINE Alu -6 306 27 665 119 0 28 chr1 248237117 248237226 -33956438 + FRAM SINE Alu 71 176 0 239 329 14 0 chr1 248239087 248239160 -33954504 - L2 LINE L2 0 3272 3199 1367 311 47 33 chr1 248239369 248240203 -33953461 + L2 LINE L2 2462 3313 0 2174 118 0 7 chr1 248241850 248242147 -33951517 + AluSq SINE Alu 1 295 -18 26 74 0 0 chr1 248242154 248242208 -33951456 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr1 248242424 248242446 -33951218 + AT_rich Low_complexity Low_complexity 1 22 0 2104 138 135 5 chr1 248242610 248242988 -33950676 - MSTA LTR MaLR -1 427 1 1764 158 10 14 chr1 248243067 248243364 -33950300 + AluJb SINE Alu 1 296 -16 316 233 28 33 chr1 248244881 248245061 -33948603 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 801 122 30 56 chr1 248245090 248245287 -33948377 - Charlie5 DNA MER1_type 0 2616 2425 251 346 49 0 chr1 248246338 248246419 -33947245 - L2 LINE L2 -20 3252 3168 390 307 39 70 chr1 248246856 248247214 -33946450 + L2 LINE L2 2328 2674 -640 1011 220 126 34 chr1 248247223 248247637 -33946027 - Charlie7 DNA MER1_type -3 2609 2158 353 175 16 0 chr1 248247656 248247719 -33945945 - MSTB LTR MaLR 0 426 363 180 111 0 0 chr1 248249061 248249088 -33944576 + (T)n Simple_repeat Simple_repeat 1 27 0 2069 135 3 0 chr1 248249100 248249396 -33944268 + AluSx SINE Alu 1 297 -15 36 62 0 0 chr1 248253242 248253306 -33940358 + AT_rich Low_complexity Low_complexity 1 64 0 218 217 0 0 chr1 248253445 248253491 -33940173 + T-rich Low_complexity Low_complexity 1 46 0 24 67 0 0 chr1 248253500 248253545 -33940119 + AT_rich Low_complexity Low_complexity 1 45 0 2066 130 0 10 chr1 248254185 248254484 -33939180 - AluSx SINE Alu -16 296 1 1511 154 44 98 chr1 248255348 248255757 -33937907 - MLT1B LTR MaLR -3 387 1 1781 166 4 0 chr1 248255817 248256135 -33937529 + AluSx SINE Alu 3 321 0 22 35 0 0 chr1 248256903 248256932 -33936732 + AT_rich Low_complexity Low_complexity 1 29 0 2102 112 30 3 chr1 248257132 248257436 -33936228 + AluSx SINE Alu 1 312 0 546 365 134 14 chr1 248258591 248259241 -33934423 - L2 LINE L2 -505 2809 2082 252 304 14 0 chr1 248259696 248259765 -33933899 - L2 LINE L2 0 3313 3244 402 328 8 8 chr1 248260867 248260998 -33932666 - MIR SINE MIR -130 132 2 338 271 28 19 chr1 248261051 248261158 -33932506 + CT-rich Low_complexity Low_complexity 5 112 0 329 380 25 12 chr1 248261345 248261508 -33932156 + MIR SINE MIR 20 184 -78 2269 58 0 0 chr1 248261890 248262165 -33931499 + AluY SINE Alu 37 311 0 897 276 42 35 chr1 248263183 248263346 -33930318 + MLT1I LTR MaLR 2 162 -247 2302 78 7 17 chr1 248263346 248263640 -33930024 - AluSx SINE Alu -21 291 1 897 276 42 35 chr1 248263640 248263878 -33929786 + MLT1I LTR MaLR 162 406 -3 23 0 0 0 chr1 248263929 248263952 -33929712 + AT_rich Low_complexity Low_complexity 1 23 0 315 279 13 0 chr1 248264536 248264615 -33929049 + MER116 DNA Mariner 1 80 0 2275 131 3 0 chr1 248265346 248265682 -33927982 + MER1B DNA MER1_type 1 337 0 4393 92 34 5 chr1 248265961 248266601 -33927063 + L1PA14 LINE L1 5375 6033 -128 306 263 97 63 chr1 248266721 248266805 -33926859 - HERVL LTR ERVL -2416 3238 3158 2169 137 49 9 chr1 248266805 248267155 -33926509 + THE1B LTR MaLR 1 364 0 306 263 97 63 chr1 248267155 248267245 -33926419 - HERVL LTR ERVL -2496 3158 3058 360 150 56 0 chr1 248267441 248267601 -33926063 + (TA)n Simple_repeat Simple_repeat 2 170 0 780 271 105 24 chr1 248267610 248268051 -33925613 - MER101 LTR ERV1 -68 502 6 3574 304 30 60 chr1 248268101 248268604 -33925060 - HERVL LTR ERVL -2869 2895 2378 2096 118 14 0 chr1 248268604 248268893 -33924771 - AluSq SINE Alu -18 295 3 3574 304 30 60 chr1 248268893 248269667 -33923997 - HERVL LTR ERVL -3386 2378 1673 2456 124 48 69 chr1 248269667 248270191 -33923473 + L1MA9 LINE L1 5800 6312 0 3574 304 30 60 chr1 248270191 248270500 -33923164 - HERVL LTR ERVL -4091 1673 1356 493 344 31 58 chr1 248270644 248271130 -33922534 - HERVL LTR ERVL -4462 1302 830 1629 139 120 6 chr1 248271190 248271514 -33922150 - MER46B DNA MER2_type 0 236 1 356 296 0 17 chr1 248271605 248271720 -33921944 - HERVL LTR ERVL -5154 610 498 1625 266 155 6 chr1 248272297 248272773 -33920891 - LTR50 LTR ERVL 0 795 183 423 0 0 0 chr1 248272773 248272820 -33920844 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1625 266 155 6 chr1 248272820 248273035 -33920629 - LTR50 LTR ERVL -612 183 1 539 313 11 17 chr1 248273655 248273834 -33919830 - MER5B DNA MER1_type 0 178 1 418 266 99 68 chr1 248274064 248274144 -33919520 + MIR SINE MIR 5 81 -181 1955 154 0 10 chr1 248274144 248274450 -33919214 + AluSx SINE Alu 1 303 -9 418 266 99 68 chr1 248274450 248274591 -33919073 + MIR SINE MIR 81 233 -29 264 317 89 24 chr1 248274647 248274770 -33918894 + L2 LINE L2 3182 3312 -1 3345 146 56 10 chr1 248274986 248275125 -33918539 + L1MA5A LINE L1 5644 5775 -522 189 0 0 0 chr1 248275125 248275146 -33918518 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 378 0 0 0 chr1 248275145 248275187 -33918477 + (CA)n Simple_repeat Simple_repeat 2 43 0 3345 146 56 10 chr1 248275146 248275429 -33918235 + L1MA5A LINE L1 5775 6068 -229 2175 116 3 0 chr1 248275429 248275722 -33917942 + AluSp SINE Alu 1 294 -19 3345 146 56 10 chr1 248275722 248275964 -33917700 + L1MA5A LINE L1 6068 6297 0 229 196 0 22 chr1 248276063 248276109 -33917555 + GA-rich Low_complexity Low_complexity 1 45 0 186 133 0 0 chr1 248276546 248276576 -33917088 + (CAT)n Simple_repeat Simple_repeat 2 31 0 498 306 142 17 chr1 248277138 248277370 -33916294 + MIR SINE MIR 2 262 0 516 165 8 16 chr1 248277417 248277544 -33916120 + CT-rich Low_complexity Low_complexity 1 126 0 266 309 51 83 chr1 248277544 248277761 -33915903 - L2 LINE L2 -10 3303 3094 199 277 0 0 chr1 248278114 248278161 -33915503 - MIR SINE MIR -65 143 97 191 271 106 0 chr1 248278159 248278244 -33915420 + MIR SINE MIR 116 209 -53 * 638 187 166 45 chr1 248281027 248281224 -33912440 - MLT1A2 LTR MaLR 0 390 171 256 91 73 0 chr1 248281274 248281329 -33912335 + T-rich Low_complexity Low_complexity 3 61 0 1714 191 4 0 chr1 248281465 248281737 -33911927 - AluSx SINE Alu -37 275 3 651 220 0 0 chr1 248281772 248281890 -33911774 - FLAM_C SINE Alu -19 124 7 719 155 22 94 chr1 248281895 248282076 -33911588 - MLT1A2 LTR MaLR -206 168 1 23 0 0 0 chr1 248282263 248282286 -33911378 + AT_rich Low_complexity Low_complexity 1 23 0 189 303 67 45 chr1 248283020 248283109 -33910555 + MIR SINE MIR 43 133 -75 27 0 0 0 chr1 248283249 248283276 -33910388 + AT_rich Low_complexity Low_complexity 1 27 0 868 190 5 83 chr1 248283528 248283733 -33909931 + MER5A DNA MER1_type 1 189 0 367 322 25 8 chr1 248283735 248283856 -33909808 + L2 LINE L2 3191 3313 0 583 327 78 46 chr1 248283861 248284295 -33909369 + L3 LINE CR1 642 1089 -488 21 0 0 0 chr1 248284352 248284373 -33909291 + AT_rich Low_complexity Low_complexity 1 21 0 184 352 55 11 chr1 248284381 248284472 -33909192 - L2 LINE L2 -42 3230 3136 406 281 191 22 chr1 248284568 248284799 -33908865 + L3 LINE CR1 1158 1427 -150 28 29 0 0 chr1 248285355 248285390 -33908274 + AT_rich Low_complexity Low_complexity 1 35 0 1035 52 22 0 chr1 248286992 248287127 -33906537 + L1MA1 LINE L1 6165 6302 0 332 337 63 53 chr1 248288671 248288974 -33904690 - L2 LINE L2 -452 2862 2557 180 410 75 21 chr1 248289024 248289490 -33904174 - L2 LINE L2 -592 2722 2232 647 291 43 16 chr1 248291340 248291594 -33902070 + MLT1L LTR MaLR 5 265 -350 330 314 91 17 chr1 248291996 248292171 -33901493 - MIR SINE MIR 0 262 75 742 255 24 67 chr1 248292178 248292433 -33901231 - MIR SINE MIR 0 262 19 475 303 187 44 chr1 248293069 248293554 -33900110 + L2 LINE L2 2739 3301 -12 341 279 25 0 chr1 248295142 248295221 -33898443 + L2 LINE L2 3184 3264 -8 4081 233 32 27 chr1 248295375 248296697 -33896967 + L1MCb LINE L1 7 1340 -4851 27 49 0 0 chr1 248296767 248296808 -33896856 + AT_rich Low_complexity Low_complexity 1 41 0 450 268 32 0 chr1 248296817 248296940 -33896724 - MIR SINE MIR -4 258 132 1988 111 20 10 chr1 248296965 248297263 -33896401 - AluSq SINE Alu 0 313 13 2489 63 0 3 chr1 248297454 248297755 -33895909 + AluY SINE Alu 1 300 -11 198 286 54 80 chr1 248298009 248298121 -33895543 - L2 LINE L2 -18 3295 3187 353 189 0 32 chr1 248299316 248299411 -33894253 - L1MA10 LINE L1 -3 6331 6240 1677 229 98 48 chr1 248299420 248300004 -33893660 - L1ME1 LINE L1 -77 6089 5477 1326 250 115 45 chr1 248299996 248300237 -33893427 + L1MEc LINE L1 866 1089 -5307 * 2071 134 3 3 chr1 248300237 248300542 -33893122 + AluSq SINE Alu 2 306 -7 1326 250 115 45 chr1 248300542 248301169 -33892495 + L1MEc LINE L1 1089 1795 -4601 1582 271 52 21 chr1 248301251 248301786 -33891878 - L1MEc LINE L1 -5801 595 44 4464 62 12 3 chr1 248302590 248303169 -33890495 + L1PA7 LINE L1 5570 6153 -1 422 293 101 23 chr1 248303281 248303526 -33890138 + ERVL LTR ERVL 4881 5141 -513 2267 101 7 0 chr1 248303561 248303869 -33889795 + AluSq SINE Alu 1 310 -3 312 27 0 0 chr1 248304619 248304656 -33889008 + (GA)n Simple_repeat Simple_repeat 1 37 0 311 304 54 18 chr1 248306190 248306302 -33887362 - MLT1H LTR MaLR 0 549 434 367 299 93 21 chr1 248306355 248306549 -33887115 - MLT1H LTR MaLR -206 343 136 1460 320 71 27 chr1 248307944 248308945 -33884719 - L2 LINE L2 -81 3232 2190 222 37 0 0 chr1 248309222 248309249 -33884415 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr1 248309292 248309322 -33884342 + AT_rich Low_complexity Low_complexity 1 30 0 2137 227 128 37 chr1 248309992 248310697 -33882967 - L1ME1 LINE L1 -7 6553 5785 2642 256 59 40 chr1 248310702 248312168 -33881496 - L1ME1 LINE L1 -1446 5094 3601 547 245 26 26 chr1 248312344 248312536 -33881128 - L1ME1 LINE L1 -3720 2820 2629 1368 184 0 13 chr1 248312536 248312798 -33880866 + AluJb SINE Alu 61 319 0 499 200 90 40 chr1 248312805 248313005 -33880659 - L1ME1 LINE L1 -3907 2633 2424 862 160 0 7 chr1 248313080 248313230 -33880434 - L1PA15 LINE L1 0 6165 6017 24 53 0 0 chr1 248313928 248313966 -33879698 + AT_rich Low_complexity Low_complexity 1 38 0 1368 218 52 20 chr1 248313968 248314317 -33879347 + L1ME1 LINE L1 5796 6155 -11 1655 147 3 39 chr1 248315327 248315613 -33878051 + AluSx SINE Alu 30 305 -7 262 228 33 43 chr1 248315936 248316028 -33877636 + L1ME LINE L1 5593 5683 -438 222 300 29 0 chr1 248316037 248316107 -33877557 + GA-rich Low_complexity Low_complexity 3 74 0 798 35 80 9 chr1 248317078 248317191 -33876473 - L1PA5 LINE L1 0 6154 6034 536 114 0 45 chr1 248317291 248317379 -33876285 - MSTA LTR MaLR -344 84 1 189 0 0 0 chr1 248318372 248318393 -33875271 + (A)n Simple_repeat Simple_repeat 1 21 0 192 375 0 0 chr1 248320224 248320280 -33873384 + L2 LINE L2 3249 3304 -9 2198 85 0 3 chr1 248321426 248321756 -33871908 - AluSc SINE Alu 0 329 1 183 80 0 0 chr1 248321882 248321907 -33871757 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 875 350 102 46 chr1 248322214 248323561 -33870103 - L2 LINE L2 0 3272 1846 661 315 54 0 chr1 248324409 248324612 -33869052 - MIR SINE MIR -16 246 33 431 263 93 17 chr1 248324651 248324677 -33868987 + L1M4 LINE L1 5584 5607 -532 2514 124 3 0 chr1 248324677 248325040 -33868624 - THE1B LTR MaLR 0 364 1 431 263 93 17 chr1 248325040 248325209 -33868455 + L1M4 LINE L1 5607 5790 -349 232 244 356 26 chr1 248325501 248325616 -33868048 - L2 LINE L2 0 3313 3161 309 51 0 0 chr1 248326426 248326465 -33867199 + (CA)n Simple_repeat Simple_repeat 2 40 0 184 329 25 0 chr1 248327001 248327080 -33866584 - MIR SINE MIR -85 177 97 477 0 0 0 chr1 248329019 248329072 -33864592 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr1 248329652 248329675 -33863989 + AT_rich Low_complexity Low_complexity 1 23 0 1973 89 63 11 chr1 248331536 248331851 -33861813 + AluSx SINE Alu 1 329 0 321 319 201 22 chr1 248332364 248332678 -33860986 + L2 LINE L2 2239 2608 -706 365 299 222 48 chr1 248332789 248333204 -33860460 + L2 LINE L2 2827 3313 0 215 103 26 0 chr1 248333378 248333417 -33860247 + (TG)n Simple_repeat Simple_repeat 1 40 0 676 313 54 0 chr1 248334651 248334891 -33858773 + MIR SINE MIR 5 257 -5 634 285 107 39 chr1 248334969 248335306 -33858358 - MER76 LTR ERV -12 676 317 876 190 17 6 chr1 248335332 248335506 -33858158 - MER76 LTR ERV -512 176 1 199 395 70 0 chr1 248335548 248335733 -33857931 - L2 LINE L2 -557 2757 2560 925 258 170 13 chr1 248336362 248336738 -33856926 + LTR16A1 LTR ERVL 1 435 -22 420 242 0 20 chr1 248337367 248337466 -33856198 - MLT1F1 LTR MaLR -410 157 61 319 246 0 0 chr1 248338853 248338918 -33854746 - LTR16B LTR ERVL -12 452 388 1451 256 85 9 chr1 248338918 248339203 -33854461 - MLT1C LTR MaLR 0 467 136 1788 86 34 15 chr1 248339203 248339470 -33854194 - L1PA8 LINE L1 -2 6170 5899 1451 256 85 9 chr1 248339470 248339618 -33854046 - MLT1C LTR MaLR -331 136 1 888 292 40 58 chr1 248339621 248340018 -33853646 - LTR16B LTR ERVL -74 390 1 1864 342 49 25 chr1 248340111 248341250 -33852414 - ERVL LTR ERVL -390 5374 4209 3747 47 0 0 chr1 248341439 248341904 -33851760 - L1PA4 LINE L1 0 6155 5691 21 0 0 0 chr1 248342162 248342183 -33851481 + AT_rich Low_complexity Low_complexity 1 21 0 186 118 0 0 chr1 248345173 248345207 -33848457 + (A)n Simple_repeat Simple_repeat 1 34 0 2540 64 0 0 chr1 248345664 248345962 -33847702 - AluY SINE Alu -12 299 2 1849 146 11 11 chr1 248346599 248346911 -33846753 - AluSq SINE Alu 0 315 4 207 0 0 0 chr1 248347057 248347080 -33846584 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 281 281 123 35 chr1 248347813 248347927 -33845737 + MIR3 SINE MIR 49 172 -36 186 311 54 40 chr1 248349061 248349135 -33844529 - MIR SINE MIR -6 256 182 26 0 0 0 chr1 248349230 248349256 -33844408 + AT_rich Low_complexity Low_complexity 1 26 0 6934 56 0 2 chr1 248350804 248351963 -33841701 - L1PA7 LINE L1 -2 6152 4988 334 188 181 60 chr1 248352337 248352470 -33841194 + MLT1C LTR MaLR 23 171 -296 287 325 130 30 chr1 248352666 248352866 -33840798 - MIR SINE MIR -20 242 23 545 216 80 28 chr1 248353042 248353218 -33840446 - L1PA16 LINE L1 -6 6160 5976 255 228 18 0 chr1 248353546 248353603 -33840061 - L2 LINE L2 0 3313 3256 22 70 0 0 chr1 248354251 248354294 -33839370 + AT_rich Low_complexity Low_complexity 1 43 0 192 253 101 51 chr1 248354746 248354825 -33838839 - MIR SINE MIR -157 105 23 552 281 6 11 chr1 248355078 248355256 -33838408 - MER5B DNA MER1_type -1 177 1 2569 105 3 6 chr1 248355808 248356169 -33837495 - THE1B LTR MaLR -2 362 3 10432 109 41 6 chr1 248356171 248357697 -33835967 - THE1B-int LTR MaLR 0 1580 1 2547 109 3 35 chr1 248357697 248358073 -33835591 - THE1B LTR MaLR 0 364 1 5212 253 58 30 chr1 248358178 248360675 -33832989 + L1M4 LINE L1 8 2433 -4249 2045 126 14 0 chr1 248360675 248360969 -33832695 + AluSq SINE Alu 1 298 -15 5212 253 58 30 chr1 248360969 248362366 -33831298 + L1M4 LINE L1 2433 6005 -677 2579 148 17 0 chr1 248362706 248363125 -33830539 - MSTA LTR MaLR -2 426 1 262 307 67 0 chr1 248363801 248363876 -33829788 + MLT1K LTR MaLR 157 236 -352 217 137 21 105 chr1 248364219 248364314 -33829350 + A-rich Low_complexity Low_complexity 3 89 0 30 59 0 0 chr1 248365516 248365567 -33828097 + AT_rich Low_complexity Low_complexity 1 51 0 598 231 8 8 chr1 248366505 248366626 -33827038 + L2 LINE L2 3192 3312 -1 659 254 36 6 chr1 248367069 248367234 -33826430 - MER5B DNA MER1_type -2 176 7 345 333 65 43 chr1 248368242 248368428 -33825236 - MIR3 SINE MIR -5 203 14 23 54 0 0 chr1 248369811 248369848 -33823816 + AT_rich Low_complexity Low_complexity 1 37 0 868 187 53 0 chr1 248370387 248370537 -33823127 - L1P3 LINE L1 -6267 194 37 372 326 64 0 chr1 248370544 248370685 -33822979 - HERVL LTR ERVL -1210 4444 4295 631 251 59 27 chr1 248370819 248371038 -33822626 + ERVL LTR ERVL 4312 4537 -1227 1417 194 14 7 chr1 248371164 248371453 -33822211 - AluJo SINE Alu -21 291 1 293 367 27 14 chr1 248371640 248371787 -33821877 + MIR3 SINE MIR 47 195 -13 231 364 61 0 chr1 248372015 248372118 -33821546 - MIR SINE MIR -54 154 45 22 88 0 0 chr1 248372198 248372255 -33821409 + AT_rich Low_complexity Low_complexity 1 57 0 258 220 0 0 chr1 248372676 248372726 -33820938 - L2 LINE L2 -30 3242 3193 261 369 86 35 chr1 248373798 248374137 -33819527 + L2 LINE L2 464 819 -2495 3725 93 4 9 chr1 248376093 248376631 -33817033 - L1PA13 LINE L1 -2 6161 5627 349 246 0 0 chr1 248376825 248376890 -33816774 - MIR SINE MIR -68 140 76 2079 101 3 11 chr1 248378521 248378807 -33814857 - AluSx SINE Alu -8 304 21 3260 65 9 7 chr1 248378809 248379256 -33814408 - LTR7 LTR ERV1 -2 448 1 2516 76 45 13 chr1 248379256 248379636 -33814028 - HERVH LTR ERV1 0 7713 7322 1236 118 40 61 chr1 248379634 248379862 -33813802 - HERVH LTR ERV1 -1894 5819 5597 * 3435 159 7 2 chr1 248379859 248380418 -33813246 - HERVH LTR ERV1 -2564 5149 4588 2814 103 5 9 chr1 248380407 248380826 -33812838 - HERVH LTR ERV1 -3797 3916 3500 * 808 152 41 0 chr1 248380825 248380970 -33812694 - HERVH LTR ERV1 -4423 3290 3140 * 19548 95 28 19 chr1 248380964 248383925 -33809739 - HERVH LTR ERV1 -4726 2987 1 3315 65 5 7 chr1 248383927 248384376 -33809288 - LTR7 LTR ERV1 -2 448 1 335 290 40 10 chr1 248385246 248385346 -33808318 - LTR33A LTR ERVL -362 161 59 275 324 16 71 chr1 248386331 248386513 -33807151 - L2 LINE L2 -9 3304 3133 1858 241 83 33 chr1 248386559 248387296 -33806368 + L1M4 LINE L1 2891 3664 -2482 21 100 0 0 chr1 248388429 248388499 -33805165 + AT_rich Low_complexity Low_complexity 1 70 0 23 54 0 0 chr1 248389111 248389148 -33804516 + AT_rich Low_complexity Low_complexity 1 37 0 1006 218 54 4 chr1 248389372 248389633 -33804031 - L1MB1 LINE L1 -4 6185 5912 244 340 62 0 chr1 248389807 248389904 -33803760 + LTR67 LTR ERVL 99 201 -356 910 148 0 31 chr1 248390204 248390366 -33803298 - AluSg/x SINE Alu -2 308 152 24 85 0 0 chr1 248390876 248390935 -33802729 + AT_rich Low_complexity Low_complexity 1 59 0 2404 114 30 87 chr1 248391756 248392228 -33801436 + MER65A LTR ERV1 1 445 0 249 302 0 0 chr1 248392453 248392516 -33801148 + MIR SINE MIR 47 109 -153 2023 266 66 46 chr1 248394315 248395436 -33798228 - L1ME3A LINE L1 0 6170 5017 32546 107 7 51 chr1 248395663 248401696 -33791968 - L1PA7 LINE L1 -6 6148 427 207 0 0 0 chr1 248401696 248401719 -33791945 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 32546 107 7 51 chr1 248401719 248402117 -33791547 - L1PA7 LINE L1 -5727 427 13 2160 272 74 28 chr1 248402125 248403294 -33790370 - L1ME3A LINE L1 -1158 4988 3766 3467 158 37 16 chr1 248403348 248403812 -33789852 - L1MA4A LINE L1 0 6303 5817 1966 162 3 3 chr1 248403812 248404114 -33789550 - AluJb SINE Alu -4 308 7 3467 158 37 16 chr1 248404114 248404356 -33789308 - L1MA4A LINE L1 -486 5817 5582 2151 250 65 39 chr1 248405631 248406597 -33787067 + L2 LINE L2 2267 3263 -50 1226 196 11 39 chr1 248406821 248407101 -33786563 + AluSx SINE Alu 5 276 -36 21 0 0 0 chr1 248407938 248407959 -33785705 + AT_rich Low_complexity Low_complexity 1 21 0 2017 132 32 24 chr1 248408196 248408566 -33785098 - THE1C LTR MaLR -2 373 1 724 286 75 0 chr1 248408566 248408765 -33784899 + MIR SINE MIR 21 234 -28 27 0 0 0 chr1 248409618 248409645 -33784019 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr1 248409665 248409688 -33783976 + AT_rich Low_complexity Low_complexity 1 23 0 216 67 0 0 chr1 248411122 248411152 -33782512 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 258 405 61 6 chr1 248411329 248411492 -33782172 + L2 LINE L2 3092 3263 -9 26 0 0 0 chr1 248412349 248412375 -33781289 + AT_rich Low_complexity Low_complexity 1 26 0 1530 216 3 3 chr1 248412429 248412730 -33780934 - AluJo SINE Alu -11 301 1 313 267 30 7 chr1 248413073 248413208 -33780456 - HAL1 LINE L1 -122 2385 2248 186 291 139 35 chr1 248413301 248413387 -33780277 - MIR3 SINE MIR -3 205 111 201 366 0 14 chr1 248413608 248413679 -33779985 + L2 LINE L2 2677 2746 -568 337 309 21 10 chr1 248413712 248413809 -33779855 - MIR SINE MIR -116 146 49 209 261 37 29 chr1 248414111 248414242 -33779422 + MIR SINE MIR 2 228 -34 200 330 72 21 chr1 248414298 248414395 -33779269 + L2 LINE L2 3168 3269 -3 236 384 91 22 chr1 248414461 248414737 -33778927 - L2 LINE L2 -421 2893 2599 272 333 29 10 chr1 248414896 248414998 -33778666 - MER5A DNA MER1_type -25 164 61 197 267 22 0 chr1 248415362 248415407 -33778257 - L3 LINE CR1 -498 1079 1034 2030 192 36 17 chr1 248415706 248415808 -33777856 + MLT2C2 LTR ERVL 1 100 -364 2007 167 9 67 chr1 248415808 248416227 -33777437 - MSTD LTR MaLR 0 396 2 2030 192 36 17 chr1 248416227 248416545 -33777119 + MLT2C2 LTR ERVL 100 429 -35 396 24 24 49 chr1 248416546 248416628 -33777036 + (TA)n Simple_repeat Simple_repeat 2 81 0 246 179 13 26 chr1 248416704 248416782 -33776882 + (TA)n Simple_repeat Simple_repeat 1 77 0 329 113 21 100 chr1 248416832 248416925 -33776739 + MLT2B2 LTR ERVL 352 514 -1 332 300 71 41 chr1 248418025 248418292 -33775372 + L1ME LINE L1 5480 5754 -410 1043 233 48 19 chr1 248418775 248419266 -33774398 + L1MB7 LINE L1 1026 1550 -4992 252 306 0 0 chr1 248419587 248419659 -33774005 - L1M4c LINE L1 -5109 1275 1204 186 43 0 0 chr1 248419706 248419729 -33773935 + (GA)n Simple_repeat Simple_repeat 2 24 0 653 254 127 31 chr1 248419740 248420000 -33773664 + L1MB7 LINE L1 1577 1861 -4785 2402 211 59 10 chr1 248420004 248420595 -33773069 + L1MB7 LINE L1 5565 6184 0 * 2468 260 62 26 chr1 248420584 248421551 -33772113 + L1MB7 LINE L1 1991 2982 -3662 392 0 21 0 chr1 248421551 248421599 -33772065 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2468 260 62 26 chr1 248421599 248422117 -33771547 + L1MB7 LINE L1 2982 3480 -3164 2713 244 25 11 chr1 248422169 248422879 -33770785 + L1MB7 LINE L1 5954 6673 -9 445 277 147 16 chr1 248423535 248423719 -33769945 + MER63A DNA MER1_type 2 209 -1 307 336 8 16 chr1 248424243 248424365 -33769299 + MLT2E LTR ERVL 34 154 -474 502 277 73 62 chr1 248424419 248424693 -33768971 + MLT2E LTR ERVL 351 627 -1 192 40 0 0 chr1 248425328 248425353 -33768311 + (A)n Simple_repeat Simple_repeat 1 25 0 311 247 12 25 chr1 248425401 248425482 -33768182 + ERVL LTR ERVL 877 956 -4808 5726 59 8 0 chr1 248425661 248426391 -33767273 - L1PA8A LINE L1 -142 5989 5254 495 374 59 31 chr1 248426478 248427040 -33766624 + L2 LINE L2 2468 3041 -231 263 284 0 0 chr1 248428428 248428495 -33765169 - MIR SINE MIR 0 262 196 243 295 0 0 chr1 248428495 248428556 -33765108 + (TA)n Simple_repeat Simple_repeat 1 61 0 205 203 0 29 chr1 248428637 248428706 -33764958 + (TA)n Simple_repeat Simple_repeat 2 68 0 1364 219 112 40 chr1 248428758 248429135 -33764529 - MLT1C LTR MaLR -8 459 42 1091 201 63 104 chr1 248429135 248429548 -33764116 - MSTD LTR MaLR 0 396 1 6359 247 66 19 chr1 248429553 248431203 -33762461 - MSTD-int LTR MaLR -6 1729 3 1558 218 55 16 chr1 248431206 248431587 -33762077 - MSTD LTR MaLR 0 396 1 231 89 44 67 chr1 248431589 248431634 -33762030 - MLT1C LTR MaLR -423 44 1 859 280 54 39 chr1 248434437 248434823 -33758841 + L1MEc LINE L1 44 435 -5961 11604 188 30 18 chr1 248434854 248437045 -33756619 + L1M1 LINE L1 17 2234 -5331 5235 150 27 8 chr1 248437156 248438000 -33755664 + L1M1 LINE L1 5821 6696 -1027 2169 130 36 30 chr1 248438000 248438362 -33755302 - THE1B LTR MaLR 0 364 1 5235 150 27 8 chr1 248438362 248438754 -33754910 + L1M1 LINE L1 6696 7079 -644 9587 177 38 12 chr1 248438863 248441849 -33751815 + L1M1 LINE L1 2739 5804 -1761 1241 133 13 10 chr1 248441950 248442126 -33751538 + L1MA1 LINE L1 5833 6007 -159 2042 116 70 3 chr1 248442126 248442475 -33751189 + L1MA2 LINE L1 5926 6304 0 1241 133 13 10 chr1 248442475 248442514 -33751150 + L1MA1 LINE L1 6007 6044 -122 1358 230 118 20 chr1 248442673 248443307 -33750357 + L1M4 LINE L1 3940 4635 -1511 264 305 61 84 chr1 248443592 248443723 -33749941 - MER102b DNA MER1_type 0 341 214 2037 139 126 23 chr1 248443723 248444111 -33749553 - MSTA LTR MaLR 0 428 1 8773 152 37 35 chr1 248444111 248445669 -33747995 - MSTA-int LTR MaLR 0 1580 21 912 180 134 5 chr1 248445702 248445896 -33747768 - MSTA LTR MaLR 0 428 210 941 154 138 11 chr1 248446005 248446193 -33747471 - MSTA LTR MaLR -216 212 1 993 332 33 26 chr1 248447419 248447838 -33745826 + L1M2c LINE L1 3 424 -6365 * 1486 164 84 4 chr1 248447831 248448334 -33745330 + L1M2 LINE L1 5015 5554 -743 1869 119 194 167 chr1 248448804 248449449 -33744215 - LTR12 LTR ERV1 0 714 53 1238 167 51 39 chr1 248449450 248449786 -33743878 - pTR5 LTR ERV1 -1356 1082 743 346 286 71 83 chr1 248449894 248449932 -33743732 - MIR3 SINE MIR -28 180 143 2068 118 0 26 chr1 248449932 248450238 -33743426 - AluSx SINE Alu -14 298 1 346 286 71 83 chr1 248450238 248450367 -33743297 - MIR3 SINE MIR -65 143 15 1425 370 19 10 chr1 248450511 248450819 -33742845 - AluY SINE Alu 0 311 1 887 194 0 0 chr1 248450855 248451010 -33742654 + FAM SINE Alu 17 171 -14 14821 143 50 16 chr1 248451081 248451529 -33742135 - Tigger2 DNA MER2_type 0 2718 2286 1908 103 37 4 chr1 248451529 248451965 -33741699 + AluSg SINE Alu 1 445 0 14821 143 50 16 chr1 248451965 248454145 -33739519 - Tigger2 DNA MER2_type -432 2286 1 245 284 45 0 chr1 248454446 248454513 -33739151 - MIR SINE MIR -7 255 186 297 377 19 19 chr1 248454746 248454900 -33738764 + MIR SINE MIR 37 190 -72 1314 230 21 45 chr1 248455707 248456042 -33737622 - MLT1J1 LTR MaLR -119 327 1 1945 137 3 41 chr1 248456402 248456768 -33736896 - L1PA16 LINE L1 -1 6165 5814 313 82 20 0 chr1 248456799 248456848 -33736816 + L1PA6 LINE L1 6006 6055 -99 * 2820 125 16 0 chr1 248456830 248457254 -33736410 - L1PA16 LINE L1 -325 5841 5411 495 328 102 8 chr1 248458129 248458385 -33735279 + MLT1I LTR MaLR 123 402 -7 1883 153 67 0 chr1 248458493 248458806 -33734858 - MLT1B LTR MaLR -56 334 1 2442 66 0 0 chr1 248459267 248459553 -33734111 + AluY SINE Alu 1 286 -25 21 0 0 0 chr1 248459553 248459574 -33734090 + AT_rich Low_complexity Low_complexity 1 21 0 1921 293 58 31 chr1 248459939 248460999 -33732665 + ERVL LTR ERVL 1577 2723 -3041 313 234 186 8 chr1 248461014 248461138 -33732526 - MLT1F1 LTR MaLR 0 567 422 5185 184 22 7 chr1 248461268 248463071 -33730593 - L1MA7 LINE L1 -2 6991 5162 19141 89 3 12 chr1 248463111 248465809 -33727855 - L1P LINE L1 -3053 3093 420 7840 187 38 91 chr1 248465909 248466705 -33726959 - L1MA7 LINE L1 -1643 5205 4368 1126 163 96 46 chr1 248466705 248466944 -33726720 - AluSx SINE Alu -24 288 38 7840 187 38 91 chr1 248466944 248469130 -33724534 - L1MA7 LINE L1 -2480 4368 2157 551 326 36 15 chr1 248469168 248469641 -33724023 - L1MEd LINE L1 -2440 3689 3207 25 65 0 0 chr1 248469781 248469827 -33723837 + AT_rich Low_complexity Low_complexity 1 46 0 209 57 29 0 chr1 248469847 248469882 -33723782 + (GA)n Simple_repeat Simple_repeat 1 36 0 395 264 42 23 chr1 248469917 248470133 -33723531 - L1MEd LINE L1 -3702 2427 2208 315 235 43 52 chr1 248470146 248470261 -33723403 - L1MEd LINE L1 -4151 2159 2046 360 64 0 0 chr1 248470290 248470337 -33723327 + (TA)n Simple_repeat Simple_repeat 2 48 0 4703 98 21 0 chr1 248470337 248471014 -33722650 - L1PA13 LINE L1 -8 6155 5465 3111 136 14 1 chr1 248471097 248471719 -33721945 - L1PA13 LINE L1 -705 5463 4835 * 6574 206 48 27 chr1 248471710 248474864 -33718800 - L1PA13 LINE L1 -3432 3365 1 403 344 99 26 chr1 248475078 248475430 -33718234 - L1MEd LINE L1 -4578 1732 1355 501 290 105 20 chr1 248475444 248475681 -33717983 - L1MEd LINE L1 -4846 1283 1067 180 111 0 0 chr1 248475681 248475708 -33717956 + (TG)n Simple_repeat Simple_repeat 2 28 0 501 290 105 20 chr1 248475708 248476100 -33717564 - L1MEd LINE L1 -5062 1067 601 283 320 40 10 chr1 248477063 248477163 -33716501 + LTR33A LTR ERVL 59 161 -362 229 306 10 10 chr1 248477380 248477478 -33716186 + LTR33A LTR ERVL 411 508 -15 1668 141 10 28 chr1 248478029 248478320 -33715344 + AluSx SINE Alu 21 306 -6 33 43 0 0 chr1 248478748 248478795 -33714869 + AT_rich Low_complexity Low_complexity 1 47 0 2990 90 2 0 chr1 248480163 248480574 -33713090 - L1P LINE L1 -4158 1988 1577 545 323 30 0 chr1 248483874 248484041 -33709623 + MIR SINE MIR 35 206 -56 1754 147 7 3 chr1 248484453 248484738 -33708926 + L1PA16 LINE L1 5861 6146 -20 10683 117 74 19 chr1 248484885 248486618 -33707046 - Tigger4(Zombi) DNA MER2_type 0 2731 903 869 186 81 0 chr1 248486612 248486773 -33706891 - Tigger4(Zombi) DNA MER2_type -2557 174 1 * 363 192 80 56 chr1 248486948 248487073 -33706591 - MLT1J2 LTR MaLR -302 148 21 300 314 59 24 chr1 248487080 248487249 -33706415 + L2 LINE L2 3133 3307 -6 251 258 0 0 chr1 248487251 248487317 -33706347 + (ACTG)n Simple_repeat Simple_repeat 4 69 0 335 119 149 0 chr1 248487328 248487395 -33706269 + MADE1 DNA Mariner 3 79 -1 1431 246 64 11 chr1 248487446 248487992 -33705672 + LTR40a LTR ERVL 4 519 0 252 200 29 29 chr1 248489345 248489398 -33704266 + (CATATA)n Simple_repeat Simple_repeat 2 57 -14 249 33 0 0 chr1 248489398 248489428 -33704236 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 200 29 29 chr1 248489428 248489444 -33704220 + (CATATA)n Simple_repeat Simple_repeat 56 71 0 263 245 128 21 chr1 248491562 248491656 -33702008 + MIR SINE MIR 51 154 -108 515 312 0 7 chr1 248491659 248491813 -33701851 - MIR SINE MIR -4 258 106 215 292 28 14 chr1 248491817 248491889 -33701775 + MIR SINE MIR 162 234 -28 296 309 0 0 chr1 248492230 248492314 -33701350 - AluSp/q SINE Alu -16 287 204 249 244 58 35 chr1 248493034 248493120 -33700544 - MER103 DNA DNA -10 156 69 1898 161 10 0 chr1 248493236 248493540 -33700124 + AluSq SINE Alu 1 307 -6 919 254 67 62 chr1 248493570 248493959 -33699705 + MLT1C LTR MaLR 6 396 -71 505 254 0 8 chr1 248493991 248494121 -33699543 - AluJb SINE Alu -29 283 155 1978 291 113 21 chr1 248494268 248495289 -33698375 - L2 LINE L2 -934 2380 1266 346 281 31 62 chr1 248495369 248495561 -33698103 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr1 248495561 248495613 -33698051 - L1MB8 LINE L1 0 6178 6127 867 199 25 0 chr1 248495616 248495812 -33697852 + LTR37A LTR ERV1 218 418 -8 402 172 83 118 chr1 248496138 248496307 -33697357 - MER106A DNA MER1_type -73 163 1 2365 224 20 27 chr1 248496349 248496911 -33696753 + MER74A LTR ERVL 1 558 0 1940 115 0 0 chr1 248497718 248497971 -33695693 - AluSx SINE Alu -59 253 1 4746 157 56 3 chr1 248498082 248498961 -33694703 - L1MA4 LINE L1 -43 6959 6035 5821 186 18 13 chr1 248499082 248500336 -33693328 - L1MA4 LINE L1 -4186 2663 1403 1191 239 50 0 chr1 248501605 248501885 -33691779 - AluSg SINE Alu -6 294 1 4189 206 32 14 chr1 248502088 248503263 -33690401 - L1MEc LINE L1 -860 5988 4761 * 5282 211 22 20 chr1 248503248 248504886 -33688778 - L1MEc LINE L1 -2631 4217 2575 3430 68 13 2 chr1 248505078 248505545 -33688119 - L1PA7 LINE L1 -2 6152 5681 2788 224 91 35 chr1 248505556 248506329 -33687335 + MER21B LTR ERV1 43 858 -5 249 286 29 76 chr1 248506766 248506937 -33686727 - L1MEc LINE L1 -4722 2307 2145 329 265 102 0 chr1 248507005 248507103 -33686561 + MER91C DNA MER1_type 32 139 -1 876 261 62 51 chr1 248507202 248507795 -33685869 - L1MEc LINE L1 -4862 1976 1377 196 355 93 0 chr1 248508398 248508505 -33685159 + L2 LINE L2 3122 3238 -34 198 71 0 0 chr1 248508512 248508540 -33685124 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 181 255 20 0 chr1 248508547 248508598 -33685066 + L2 LINE L2 2917 2968 -304 247 352 0 33 chr1 248508741 248508832 -33684832 + L2 LINE L2 3181 3268 -4 1905 209 135 0 chr1 248508988 248509381 -33684283 - MLT2B1 LTR ERVL -74 446 1 207 125 0 111 chr1 248509387 248509459 -33684205 + (TAAAAA)n Simple_repeat Simple_repeat 3 66 0 706 222 17 34 chr1 248509625 248509801 -33683863 - MER58 DNA MER1_type -153 188 16 265 313 113 48 chr1 248509982 248510212 -33683452 + L2 LINE L2 2934 3178 -135 1353 205 77 12 chr1 248510293 248510630 -33683034 - Charlie4a DNA MER1_type 0 508 150 920 319 27 18 chr1 248510811 248511143 -33682521 + L2 LINE L2 513 847 -2467 526 325 58 76 chr1 248511363 248511638 -33682026 - L1MEd LINE L1 -5285 846 568 288 0 0 0 chr1 248511638 248511670 -33681994 + (CA)n Simple_repeat Simple_repeat 2 33 0 526 325 58 76 chr1 248511670 248511692 -33681972 - L1MEd LINE L1 -5563 568 547 2113 110 21 0 chr1 248511692 248511983 -33681681 - AluSg SINE Alu -11 299 3 526 325 58 76 chr1 248511983 248512526 -33681138 - L1MEd LINE L1 -5584 547 170 1121 295 37 41 chr1 248512680 248513196 -33680468 + L2 LINE L2 2290 2803 -511 679 289 52 44 chr1 248515523 248515772 -33677892 - MIR SINE MIR -10 252 2 2108 131 28 11 chr1 248515818 248516177 -33677487 + L1MA4A LINE L1 5933 6297 -6 439 295 60 92 chr1 248516180 248516505 -33677159 - LTR67 LTR ERVL -39 518 209 2413 85 0 0 chr1 248516505 248516810 -33676854 + AluSx SINE Alu 1 305 -7 439 295 60 92 chr1 248516810 248516921 -33676743 - LTR67 LTR ERVL -348 209 96 332 217 48 0 chr1 248516988 248517071 -33676593 - MER53 DNA DNA -90 99 13 344 271 43 96 chr1 248518658 248518938 -33674726 - L1ME4a LINE L1 -12 6109 5845 242 300 10 10 chr1 248519058 248519158 -33674506 - L1ME4a LINE L1 -336 5785 5686 455 32 0 16 chr1 248519435 248519497 -33674167 + (CA)n Simple_repeat Simple_repeat 1 61 0 2225 112 51 28 chr1 248520393 248520749 -33672915 - THE1B LTR MaLR 0 364 1 6418 84 23 13 chr1 248520749 248521618 -33672046 - THE1B-int LTR MaLR 0 1580 703 4545 100 3 0 chr1 248522033 248522663 -33671001 - THE1B-int LTR MaLR -886 694 63 2206 126 51 28 chr1 248522669 248523025 -33670639 - THE1B LTR MaLR 0 364 1 313 328 94 23 chr1 248523301 248523472 -33670192 + MIR SINE MIR 3 185 -77 236 383 102 14 chr1 248523521 248523816 -33669848 - L2 LINE L2 -2556 758 438 199 368 23 68 chr1 248523876 248523935 -33669729 - L2 LINE L2 -2794 520 460 189 0 0 0 chr1 248523935 248523956 -33669708 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 199 368 23 68 chr1 248523956 248524116 -33669548 - L2 LINE L2 -2854 460 311 741 193 0 22 chr1 248524837 248524972 -33668692 + FLAM_A SINE Alu 2 133 0 412 345 0 20 chr1 248525176 248525324 -33668340 - MIR SINE MIR -111 151 7 946 314 95 30 chr1 248526956 248527495 -33666169 + MLT1G1 LTR MaLR 4 577 -18 326 264 0 104 chr1 248527788 248527913 -33665751 - MER94 DNA DNA -17 117 6 260 367 128 20 chr1 248528494 248528690 -33664974 - L3b LINE CR1 -18 1565 1349 1621 216 62 77 chr1 248530910 248531470 -33662194 + MLT2B3 LTR ERVL 1 552 -2 267 242 45 30 chr1 248531712 248531778 -33661886 - L3 LINE CR1 -13 1564 1498 374 235 122 70 chr1 248531911 248532026 -33661638 - L2 LINE L2 0 3313 3193 232 261 0 43 chr1 248532282 248532351 -33661313 + MIR SINE MIR 163 228 -34 21 0 0 0 chr1 248532504 248532525 -33661139 + AT_rich Low_complexity Low_complexity 1 21 0 3333 106 45 4 chr1 248532667 248533158 -33660506 - MER9 LTR ERVK 0 511 1 3981 178 28 64 chr1 248534602 248535593 -33658071 - L1MB2 LINE L1 -10 6161 5207 2146 169 41 10 chr1 248535593 248536008 -33657656 + MSTA LTR MaLR 1 428 0 9428 162 25 2 chr1 248536008 248537621 -33656043 + MSTA-int LTR MaLR 1 1651 0 1968 123 181 8 chr1 248537621 248537986 -33655678 + MSTA LTR MaLR 1 428 0 234 163 0 0 chr1 248537988 248538031 -33655633 - L1MB2 LINE L1 -937 5209 5167 4612 168 35 5 chr1 248538767 248539607 -33654057 - MER6 DNA MER2_type 0 865 1 251 352 0 44 chr1 248539720 248539811 -33653853 + L2 LINE L2 3186 3272 0 369 343 39 34 chr1 248540296 248540529 -33653135 - MIR SINE MIR -20 242 9 30 27 0 0 chr1 248541263 248541300 -33652364 + AT_rich Low_complexity Low_complexity 1 37 0 1952 187 132 20 chr1 248541882 248542336 -33651328 - MLT1D LTR MaLR 0 505 1 21 57 0 0 chr1 248542412 248542447 -33651217 + AT_rich Low_complexity Low_complexity 1 35 0 459 290 111 37 chr1 248542907 248543901 -33649763 - L1ME LINE L1 -519 5643 4578 21 57 0 0 chr1 248543962 248543997 -33649667 + AT_rich Low_complexity Low_complexity 1 35 0 189 273 159 0 chr1 248544591 248544679 -33648985 + L2 LINE L2 2844 2945 -369 1208 222 101 38 chr1 248544696 248545061 -33648603 + MLT1C LTR MaLR 79 466 -1 912 278 52 41 chr1 248545061 248545428 -33648236 + L2 LINE L2 2943 3313 0 417 358 93 9 chr1 248545613 248545828 -33647836 + MIR SINE MIR 20 252 -10 301 274 140 18 chr1 248546887 248547051 -33646613 - MER5A DNA MER1_type -4 185 2 368 344 54 9 chr1 248547112 248547333 -33646331 + L1MEc LINE L1 37 267 -6129 251 274 0 63 chr1 248547727 248547822 -33645842 + CT-rich Low_complexity Low_complexity 3 91 0 24 0 0 0 chr1 248548272 248548296 -33645368 + AT_rich Low_complexity Low_complexity 1 24 0 1730 221 56 60 chr1 248548333 248548884 -33644780 + L1ME1 LINE L1 5613 6161 -5 335 238 0 24 chr1 248551240 248551324 -33642340 + MLT1J1 LTR MaLR 66 147 -299 1621 189 0 17 chr1 248552127 248552429 -33641235 + AluJb SINE Alu 1 297 -15 21 57 0 0 chr1 248552562 248552597 -33641067 + AT_rich Low_complexity Low_complexity 1 35 0 373 285 101 48 chr1 248552658 248553653 -33640011 + L1ME LINE L1 4578 5643 -519 21 57 0 0 chr1 248554113 248554148 -33639516 + AT_rich Low_complexity Low_complexity 1 35 0 731 196 8 0 chr1 248554224 248554357 -33639307 + MLT1D LTR MaLR 1 134 -371 10225 182 37 51 chr1 248554363 248554605 -33639059 - L1 LINE L1 -1500 5348 5104 231 114 0 0 chr1 248554605 248554649 -33639015 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 10225 182 37 51 chr1 248554649 248554784 -33638880 - L1 LINE L1 -1744 5104 4969 1951 113 10 17 chr1 248554784 248555075 -33638589 - AluSq SINE Alu -24 289 1 10225 182 37 51 chr1 248555075 248558329 -33635335 - L1 LINE L1 -1879 4969 1670 235 0 0 0 chr1 248558329 248558355 -33635309 + (TTTA)n Simple_repeat Simple_repeat 2 140 0 237 94 0 0 chr1 248558355 248558387 -33635277 - AluY SINE Alu -19 281 250 1344 82 7 6 chr1 248558368 248558561 -33635103 - AluY SINE Alu -137 174 1 * 10225 182 37 51 chr1 248558561 248560140 -33633524 - L1 LINE L1 -5350 1498 3 5039 234 49 39 chr1 248560209 248560555 -33633109 - L1MEc LINE L1 -1877 4338 3997 1721 184 20 3 chr1 248560555 248560849 -33632815 - AluJb SINE Alu -13 299 1 5039 234 49 39 chr1 248560849 248562488 -33631176 - L1MEc LINE L1 -2218 3997 2375 2241 125 0 10 chr1 248562488 248562800 -33630864 - AluSx SINE Alu -3 309 1 5039 234 49 39 chr1 248562800 248562819 -33630845 - L1MEc LINE L1 -3840 2375 2358 2292 178 54 2 chr1 248562819 248563224 -33630440 + MSTB LTR MaLR 1 426 0 5039 234 49 39 chr1 248563224 248563432 -33630232 - L1MEc LINE L1 -3857 2358 2120 705 302 17 17 chr1 248563462 248563694 -33629970 - L2 LINE L2 -264 3049 2818 762 308 185 12 chr1 248563835 248564251 -33629413 + L2 LINE L2 67 554 -2760 2195 113 0 0 chr1 248564448 248564757 -33628907 + AluSx SINE Alu 1 309 0 238 196 0 0 chr1 248564810 248564856 -33628808 + MIR SINE MIR 92 137 -125 * 1160 265 225 40 chr1 248564851 248565508 -33628156 + L2 LINE L2 1547 2325 -989 307 292 62 0 chr1 248565627 248565723 -33627941 + MER5C DNA MER1_type 5 106 -218 2100 125 7 0 chr1 248565723 248566019 -33627645 - AluSx SINE Alu -14 298 1 226 115 39 0 chr1 248566067 248566119 -33627545 + (TA)n Simple_repeat Simple_repeat 2 55 0 341 65 0 0 chr1 248566127 248566173 -33627491 + MLT2A1 LTR ERVL 395 440 -4 183 157 255 0 chr1 248566181 248566232 -33627432 + MER5C DNA MER1_type 261 324 0 21 36 0 0 chr1 248566274 248566302 -33627362 + AT_rich Low_complexity Low_complexity 1 28 0 414 288 87 39 chr1 248566755 248567067 -33626597 - L1ME LINE L1 -353 5768 5436 2213 103 0 0 chr1 248567067 248567391 -33626273 - AluSg SINE Alu 0 310 1 414 288 87 39 chr1 248567391 248567458 -33626206 - L1ME LINE L1 -685 5436 5374 26 0 0 0 chr1 248567820 248567846 -33625818 + AT_rich Low_complexity Low_complexity 1 26 0 1058 84 281 6 chr1 248568051 248568131 -33625533 - MER30 DNA MER1_type 0 230 173 240 35 0 0 chr1 248568131 248568160 -33625504 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 1058 84 281 6 chr1 248568160 248568257 -33625407 - MER30 DNA MER1_type -57 173 4 304 370 8 15 chr1 248568342 248568493 -33625171 + MIR SINE MIR 8 156 -64 186 188 0 0 chr1 248568992 248569024 -33624640 - MIR SINE MIR -8 254 223 357 299 148 55 chr1 248570385 248570691 -33622973 + L1ME4a LINE L1 5583 5936 -185 1821 171 10 3 chr1 248570691 248570989 -33622675 - AluJo SINE Alu -12 300 1 357 299 148 55 chr1 248570989 248571080 -33622584 + L1ME4a LINE L1 5936 6017 -104 235 304 14 0 chr1 248572073 248572142 -33621522 - L2 LINE L2 -8 3264 3195 288 111 0 0 chr1 248572881 248572926 -33620738 + (GA)n Simple_repeat Simple_repeat 2 46 0 431 287 21 21 chr1 248573628 248573771 -33619893 - MIR SINE MIR -82 180 38 339 44 0 0 chr1 248574804 248574849 -33618815 + (TC)n Simple_repeat Simple_repeat 1 45 0 988 200 0 29 chr1 248574861 248575066 -33618598 - AluJo SINE Alu -31 281 83 2479 64 0 0 chr1 248575814 248576110 -33617554 - AluY SINE Alu -15 296 1 2022 135 7 0 chr1 248576443 248576747 -33616917 - AluSx SINE Alu -2 310 5 3104 167 40 0 chr1 248577315 248577885 -33615779 + L1MB1 LINE L1 5553 6145 -23 1508 243 45 13 chr1 248577911 248578377 -33615287 - L1M4 LINE L1 -1379 4767 4287 1991 117 0 7 chr1 248578431 248578704 -33614960 - AluSx SINE Alu -41 271 1 2113 139 3 0 chr1 248578709 248579012 -33614652 - AluSq SINE Alu -9 304 1 3203 126 32 2 chr1 248579281 248579812 -33613852 - MER41B LTR ERV1 -88 547 1 7493 122 27 34 chr1 248579814 248581128 -33612536 - MER41B-int LTR ERV1 -2 5944 4639 471 153 35 0 chr1 248581123 248581208 -33612456 - MER41A-int LTR ERV1 -5858 88 1 * 827 113 0 8 chr1 248581208 248581341 -33612323 - MER41A LTR ERV1 0 554 423 209 119 0 24 chr1 248582530 248582572 -33611092 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 660 237 46 52 chr1 248583016 248583189 -33610475 + L2 LINE L2 327 498 -2816 324 156 0 16 chr1 248583193 248583257 -33610407 - Charlie1 DNA MER1_type -6 2755 2693 2220 131 0 6 chr1 248583267 248583580 -33610084 - AluSx SINE Alu -1 311 1 2109 129 0 7 chr1 248583593 248583888 -33609776 - AluSx SINE Alu -19 293 1 205 329 114 0 chr1 248583917 248583987 -33609677 - L2 LINE L2 -26 3246 3169 312 305 21 0 chr1 248584423 248584518 -33609146 + MIR SINE MIR 48 144 -118 225 270 30 60 chr1 248584758 248584858 -33608806 - MIR SINE MIR -80 128 32 356 292 115 47 chr1 248585337 248585529 -33608135 - MIR SINE MIR -46 216 12 1075 167 0 80 chr1 248586054 248586330 -33607334 - L1MA4 LINE L1 -9 6291 6038 29 28 0 0 chr1 248586557 248586593 -33607071 + AT_rich Low_complexity Low_complexity 1 36 0 1021 184 48 5 chr1 248586911 248587117 -33606547 + MER20 DNA MER1_type 2 216 -3 794 274 47 5 chr1 248587318 248587530 -33606134 + MIR SINE MIR 21 241 -21 1001 291 46 11 chr1 248587791 248588142 -33605522 + HsTC2b DNA Tc2 2 364 -551 635 256 109 11 chr1 248588153 248588438 -33605226 + HsTC2b DNA Tc2 602 914 -4 352 355 72 40 chr1 248588665 248588702 -33604962 + L2 LINE L2 2955 2989 -283 4786 143 22 55 chr1 248588702 248589007 -33604657 + MER49 LTR ERV1 5 318 -605 1883 118 87 7 chr1 248589007 248589296 -33604368 + AluSx SINE Alu 1 312 0 4786 143 22 55 chr1 248589296 248589940 -33603724 + MER49 LTR ERV1 318 923 0 352 355 72 40 chr1 248589940 248590206 -33603458 + L2 LINE L2 2989 3268 -4 956 298 157 19 chr1 248590276 248590771 -33602893 - L2 LINE L2 0 3313 2742 2282 93 0 3 chr1 248591219 248591520 -33602144 - AluSq SINE Alu -13 300 1 198 339 76 0 chr1 248591590 248591708 -33601956 + MIR SINE MIR 120 246 -16 21 36 0 0 chr1 248591710 248591738 -33601926 + AT_rich Low_complexity Low_complexity 1 28 0 296 337 32 64 chr1 248593271 248593458 -33600206 + MIR SINE MIR 20 150 -58 3249 125 92 9 chr1 248593820 248594387 -33599277 - L1PA16 LINE L1 -11 6155 5542 2275 80 3 20 chr1 248594620 248594919 -33598745 + AluY SINE Alu 3 296 -15 210 268 219 24 chr1 248595332 248595455 -33598209 - L2 LINE L2 -5 3267 3121 212 315 15 62 chr1 248596210 248596340 -33597324 - MIR SINE MIR -54 208 85 299 253 0 23 chr1 248596520 248596607 -33597057 - MLT1I LTR MaLR 0 409 325 26 88 0 0 chr1 248596735 248596803 -33596861 + AT_rich Low_complexity Low_complexity 1 68 0 1666 176 3 19 chr1 248596835 248597142 -33596522 - AluJo SINE Alu -10 302 1 232 282 74 37 chr1 248597523 248597686 -33595978 - L1ME LINE L1 -294 5876 5708 263 372 0 0 chr1 248597992 248598121 -33595543 - MIR SINE MIR -1 261 133 259 260 64 46 chr1 248598669 248598795 -33594869 - MIR SINE MIR -72 136 2 204 316 79 53 chr1 248598819 248598933 -33594731 + L2 LINE L2 3179 3295 -18 4084 143 36 14 chr1 248599425 248600194 -33593470 + L1MB3 LINE L1 5397 6182 -1 319 158 0 18 chr1 248601172 248601229 -33592435 - L2 LINE L2 -2 3270 3215 561 223 44 33 chr1 248601229 248601429 -33592235 - MER51A LTR ERV1 0 640 440 37717 74 4 9 chr1 248601429 248607600 -33586064 + L1PA5 LINE L1 11 6154 0 519 244 82 45 chr1 248607641 248607932 -33585732 + L1MDa LINE L1 1470 1771 -4769 6477 152 15 18 chr1 248608145 248609339 -33584325 - LTR57-int LTR ERVL -4152 1191 1 2461 164 25 2 chr1 248609339 248609736 -33583928 - LTR57 LTR ERVL 0 411 6 200 208 0 57 chr1 248610097 248610150 -33583514 + (TATG)n Simple_repeat Simple_repeat 1 50 0 24 32 0 0 chr1 248611893 248611924 -33581740 + AT_rich Low_complexity Low_complexity 1 31 0 1215 258 67 39 chr1 248611926 248612357 -33581307 + L1MCc LINE L1 13 455 -5968 694 274 86 84 chr1 248612422 248612805 -33580859 + L1MCc LINE L1 649 1032 -5391 457 216 50 50 chr1 248612982 248613121 -33580543 - LTR41 LTR ERVL -632 141 3 638 225 14 76 chr1 248613121 248613418 -33580246 - L1MDa LINE L1 -3843 2697 2421 814 205 71 89 chr1 248616333 248616557 -33577107 - MER58A DNA MER1_type -4 220 1 258 32 0 0 chr1 248616702 248616733 -33576931 + (TG)n Simple_repeat Simple_repeat 1 31 0 721 307 105 40 chr1 248616748 248617175 -33576489 - LTR33 LTR ERVL -47 474 20 1628 240 36 34 chr1 248617258 248617758 -33575906 - L1ME1 LINE L1 -4 6231 5731 1653 197 52 52 chr1 248617771 248618228 -33575436 + MLT1C LTR MaLR 11 467 0 2254 233 63 23 chr1 248618228 248619399 -33574265 - L1ME1 LINE L1 -499 5736 4511 * 14203 170 32 43 chr1 248619395 248621005 -33572659 - L1MA4A LINE L1 -4 7001 5376 1944 152 10 0 chr1 248621005 248621295 -33572369 - AluSg SINE Alu -17 293 1 14203 170 32 43 chr1 248621295 248621602 -33572062 - L1MA4A LINE L1 -1629 5376 5067 231 114 0 0 chr1 248621602 248621646 -33572018 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 14203 170 32 43 chr1 248621646 248621781 -33571883 - L1MA4A LINE L1 -1938 5067 4932 1951 113 10 17 chr1 248621781 248622072 -33571592 - AluSq SINE Alu -24 289 1 14203 170 32 43 chr1 248622072 248625324 -33568340 - L1MA4A LINE L1 -2073 4932 1648 234 0 0 0 chr1 248625324 248625350 -33568314 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 14203 170 32 43 chr1 248625350 248625363 -33568301 - L1MA4A LINE L1 -5357 1648 1636 1320 98 21 5 chr1 248625363 248625556 -33568108 - AluY SINE Alu -115 196 1 14203 170 32 43 chr1 248625556 248627135 -33566529 - L1MA4A LINE L1 -5369 1636 3 5525 231 52 42 chr1 248627204 248627550 -33566114 - L1ME1 LINE L1 -1877 4338 3997 1689 184 20 3 chr1 248627550 248627844 -33565820 - AluJb SINE Alu -13 299 1 5525 231 52 42 chr1 248627844 248629482 -33564182 - L1ME1 LINE L1 -2218 3997 2376 2217 122 0 10 chr1 248629482 248629794 -33563870 - AluSx SINE Alu -3 309 1 5525 231 52 42 chr1 248629794 248629813 -33563851 - L1ME1 LINE L1 -3839 2376 2359 2292 178 54 2 chr1 248629813 248630218 -33563446 + MSTB LTR MaLR 1 426 0 5525 231 52 42 chr1 248630218 248630426 -33563238 - L1ME1 LINE L1 -3856 2359 2120 694 302 17 17 chr1 248630456 248630688 -33562976 - L2 LINE L2 -264 3049 2818 752 308 185 12 chr1 248630829 248631245 -33562419 + L2 LINE L2 67 554 -2760 2183 113 0 0 chr1 248631442 248631751 -33561913 + AluSx SINE Alu 1 309 0 237 196 0 0 chr1 248631804 248631850 -33561814 + MIR SINE MIR 92 137 -125 * 1160 265 225 40 chr1 248631845 248632502 -33561162 + L2 LINE L2 1547 2325 -989 306 292 62 0 chr1 248632621 248632717 -33560947 + MER5C DNA MER1_type 5 106 -218 2091 123 7 0 chr1 248632717 248633010 -33560654 - AluSx SINE Alu -14 298 4 226 115 39 0 chr1 248633061 248633113 -33560551 + (TA)n Simple_repeat Simple_repeat 2 55 0 357 83 0 0 chr1 248633119 248633167 -33560497 + MLT2A1 LTR ERVL 393 440 -4 185 157 255 0 chr1 248633175 248633226 -33560438 + MER5C DNA MER1_type 261 324 0 21 36 0 0 chr1 248633268 248633296 -33560368 + AT_rich Low_complexity Low_complexity 1 28 0 468 283 103 48 chr1 248633749 248634061 -33559603 - L1ME LINE L1 -353 5768 5436 2214 103 0 0 chr1 248634061 248634385 -33559279 - AluSg SINE Alu 0 310 1 468 283 103 48 chr1 248634385 248634452 -33559212 - L1ME LINE L1 -685 5436 5374 26 0 0 0 chr1 248634814 248634840 -33558824 + AT_rich Low_complexity Low_complexity 1 26 0 1049 84 281 6 chr1 248635045 248635125 -33558539 - MER30 DNA MER1_type 0 230 173 240 35 0 0 chr1 248635125 248635154 -33558510 + (TTTC)n Simple_repeat Simple_repeat 1 29 0 1049 84 281 6 chr1 248635154 248635251 -33558413 - MER30 DNA MER1_type -57 173 4 309 370 8 15 chr1 248635336 248635487 -33558177 + MIR SINE MIR 8 156 -64 187 188 0 0 chr1 248635986 248636018 -33557646 - MIR SINE MIR -8 254 223 316 300 117 84 chr1 248636545 248636972 -33556692 - L1M2 LINE L1 -5656 1193 753 23 0 0 0 chr1 248637711 248637734 -33555930 + GC_rich Low_complexity Low_complexity 1 23 0 2318 78 3 7 chr1 248638339 248638647 -33555017 - AluSc SINE Alu -2 307 1 1029 57 0 0 chr1 248638822 248638946 -33554718 - AluY SINE Alu -10 301 178 328 337 95 12 chr1 248639733 248639902 -33553762 + MIR SINE MIR 28 210 -52 2395 66 0 3 chr1 248640858 248641159 -33552505 - AluY SINE Alu -11 300 1 245 234 0 0 chr1 248641466 248641513 -33552151 - L2 LINE L2 -9 3263 3217 22 0 0 0 chr1 248643137 248643159 -33550505 + AT_rich Low_complexity Low_complexity 1 22 0 1998 155 0 0 chr1 248644198 248644501 -33549163 + AluSx SINE Alu 1 303 -9 1858 151 3 28 chr1 248645279 248645597 -33548067 - AluSx SINE Alu -2 310 1 653 164 0 43 chr1 248645652 248645768 -33547896 + FRAM SINE Alu 1 110 -66 1905 87 94 4 chr1 248645828 248646094 -33547570 - AluYa5 SINE Alu -19 292 3 376 297 45 71 chr1 248646379 248646534 -33547130 - L2 LINE L2 -1 3271 3121 544 217 191 21 chr1 248647481 248647670 -33545994 - MER58A DNA MER1_type 0 224 4 27 49 0 0 chr1 248648061 248648102 -33545562 + AT_rich Low_complexity Low_complexity 1 41 0 909 225 9 52 chr1 248648570 248648728 -33544936 - MER58A DNA MER1_type -2199 221 75 2448 70 0 0 chr1 248648728 248649026 -33544638 - AluY SINE Alu -13 298 1 909 225 9 52 chr1 248649026 248649098 -33544566 - MER58A DNA MER1_type -2345 75 1 1900 137 49 0 chr1 248650208 248650492 -33543172 + AluSg SINE Alu 1 298 -12 412 323 94 36 chr1 248651313 248651620 -33542044 - L1M4 LINE L1 -1122 5024 4700 24 32 0 0 chr1 248651747 248651778 -33541886 + AT_rich Low_complexity Low_complexity 1 31 0 2175 125 0 13 chr1 248651778 248652090 -33541574 - AluSx SINE Alu -4 308 1 3385 126 32 2 chr1 248652359 248652890 -33540774 - MER41B LTR ERV1 -88 547 1 8037 118 27 33 chr1 248652890 248654206 -33539458 - MER41B-int LTR ERV1 0 5946 4639 501 153 35 0 chr1 248654201 248654286 -33539378 - MER41A-int LTR ERV1 -5858 88 1 * 872 113 0 8 chr1 248654286 248654419 -33539245 - MER41A LTR ERV1 0 554 423 209 119 0 24 chr1 248655610 248655652 -33538012 + (TTTTTG)n Simple_repeat Simple_repeat 1 41 0 653 237 46 52 chr1 248656096 248656269 -33537395 + L2 LINE L2 327 498 -2816 6136 184 119 77 chr1 248656273 248656347 -33537317 - Charlie1 DNA MER1_type -6 2755 2686 2302 100 3 3 chr1 248656347 248656657 -33537007 - AluY SINE Alu -1 310 1 6136 184 119 77 chr1 248656657 248658352 -33535312 - Charlie1 DNA MER1_type -75 2686 898 1653 177 16 32 chr1 248658352 248658668 -33534996 - AluJo SINE Alu -1 311 1 6136 184 119 77 chr1 248658668 248658798 -33534866 - Charlie1 DNA MER1_type -1863 898 775 391 153 0 0 chr1 248658796 248658855 -33534809 - MER68 LTR ERV1 -346 216 158 * 3127 198 33 10 chr1 248658862 248659555 -33534109 - L1ME2 LINE L1 -197 5967 5259 421 247 12 0 chr1 248659557 248659642 -33534022 + MER20 DNA MER1_type 3 88 -131 464 273 138 18 chr1 248659714 248660224 -33533440 - L1MEc LINE L1 -5011 1194 660 617 96 11 0 chr1 248660480 248660574 -33533090 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 2179 109 7 0 chr1 248660578 248660881 -33532783 - AluSc SINE Alu -4 305 1 581 272 54 72 chr1 248661035 248661077 -33532587 - L1MEc LINE L1 -6090 306 265 2071 143 28 28 chr1 248661077 248661441 -33532223 - THE1B LTR MaLR 0 364 1 581 272 54 72 chr1 248661441 248661674 -33531990 - L1MEc LINE L1 -6131 265 36 2173 123 3 0 chr1 248663085 248663387 -33530277 - AluSx SINE Alu -9 303 1 220 311 179 13 chr1 248663388 248663539 -33530125 - MIR3 SINE MIR -10 198 23 184 369 0 58 chr1 248663678 248663781 -33529883 + L2 LINE L2 2945 3041 -231 189 253 130 110 chr1 248664183 248664337 -33529327 - MER5B DNA MER1_type -18 160 4 635 355 97 39 chr1 248665122 248665770 -33527894 - L2 LINE L2 -553 2761 2076 307 337 93 55 chr1 248665777 248666216 -33527448 - L2 LINE L2 -1374 1940 1485 335 247 141 59 chr1 248667895 248668065 -33525599 + L1MEd LINE L1 904 1087 -5032 305 248 58 41 chr1 248668282 248668403 -33525261 + HAL1 LINE L1 1498 1620 -887 1740 131 4 0 chr1 248670167 248670419 -33523245 - AluSx SINE Alu -14 298 46 311 266 11 43 chr1 248670632 248670726 -33522938 + MIR SINE MIR 22 112 -150 611 238 16 0 chr1 248672236 248672358 -33521306 + MER58B DNA MER1_type 218 341 0 181 358 74 0 chr1 248672944 248673039 -33520625 - L2 LINE L2 0 3272 3171 754 194 0 7 chr1 248673690 248673834 -33519830 + FLAM_C SINE Alu 1 143 0 21 71 0 0 chr1 248673954 248673996 -33519668 + AT_rich Low_complexity Low_complexity 1 42 0 32 67 0 0 chr1 248674137 248674197 -33519467 + AT_rich Low_complexity Low_complexity 1 60 0 1460 318 174 24 chr1 248674575 248675716 -33517948 + L2 LINE L2 1991 3297 -16 22 0 0 0 chr1 248676125 248676147 -33517517 + AT_rich Low_complexity Low_complexity 1 22 0 182 261 65 0 chr1 248678159 248678205 -33515459 - L2 LINE L2 -2 3311 3263 183 300 71 0 chr1 248678329 248678399 -33515265 - MIR SINE MIR -33 229 155 351 329 180 50 chr1 248678452 248679250 -33514414 - L2 LINE L2 -243 3029 2130 273 57 0 0 chr1 248679512 248679547 -33514117 - U2 snRNA snRNA -153 35 1 699 275 57 22 chr1 248679883 248680131 -33513533 + MIR SINE MIR 8 260 -2 23 33 0 0 chr1 248680822 248680852 -33512812 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr1 248681002 248681029 -33512635 + AT_rich Low_complexity Low_complexity 1 27 0 273 330 104 32 chr1 248681828 248682049 -33511615 + MIR SINE MIR 20 256 -6 21 0 0 0 chr1 248682084 248682105 -33511559 + AT_rich Low_complexity Low_complexity 1 21 0 1358 94 42 24 chr1 248682152 248682364 -33511300 + L1PA11 LINE L1 5938 6153 -21 485 118 0 0 chr1 248682468 248682536 -33511128 - AluSc SINE Alu -29 280 213 4816 191 20 19 chr1 248682542 248683246 -33510418 - L1P LINE L1 -800 5346 4639 2327 103 3 6 chr1 248683246 248683558 -33510106 - AluY SINE Alu 0 311 1 4816 191 20 19 chr1 248683558 248683990 -33509674 - L1P LINE L1 -1507 4639 4209 21 36 0 0 chr1 248684304 248684332 -33509332 + AT_rich Low_complexity Low_complexity 1 28 0 2490 66 0 0 chr1 248684566 248684868 -33508796 + AluY SINE Alu 1 302 -9 2048 189 197 6 chr1 248684915 248685413 -33508251 - MER39 LTR ERV1 -37 670 78 2414 68 3 0 chr1 248685706 248685999 -33507665 + AluSp SINE Alu 1 294 -19 3123 201 69 12 chr1 248686014 248686745 -33506919 + MER21B LTR ERV1 1 801 -62 352 264 56 51 chr1 248686759 248686937 -33506727 + MER34 LTR ERV1 3 181 -361 372 90 72 9 chr1 248687004 248687115 -33506549 + (TA)n Simple_repeat Simple_repeat 1 118 0 643 293 38 49 chr1 248687115 248687402 -33506262 + MER34 LTR ERV1 257 540 -2 397 354 14 7 chr1 248691669 248691813 -33501851 - MIR SINE MIR -98 164 20 206 306 46 74 chr1 248691838 248691946 -33501718 + MER5A DNA MER1_type 35 139 -50 22 0 0 0 chr1 248692078 248692100 -33501564 + AT_rich Low_complexity Low_complexity 1 22 0 393 163 133 20 chr1 248692616 248692714 -33500950 + MER5B DNA MER1_type 1 109 -69 213 254 0 16 chr1 248693990 248694053 -33499611 + (TA)n Simple_repeat Simple_repeat 2 63 0 376 151 0 42 chr1 248695442 248695561 -33498103 + (TA)n Simple_repeat Simple_repeat 1 114 0 554 69 0 0 chr1 248695561 248695633 -33498031 - AluSq/x SINE Alu -184 128 57 195 129 0 0 chr1 248695633 248695664 -33498000 + (TA)n Simple_repeat Simple_repeat 1 31 0 511 314 34 39 chr1 248695890 248696097 -33497567 + MIR SINE MIR 1 206 -56 2182 103 13 16 chr1 248696568 248696586 -33497078 - AluSg SINE Alu 0 310 293 1344 63 0 0 chr1 248696586 248696761 -33496903 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2182 103 13 16 chr1 248696761 248697053 -33496611 - AluSg SINE Alu -17 293 1 2196 95 14 0 chr1 248697514 248697808 -33495856 - AluSx SINE Alu -14 298 1 2340 40 0 0 chr1 248698989 248699261 -33494403 - AluY SINE Alu 0 311 40 344 311 0 0 chr1 248699647 248699737 -33493927 - L1MC4 LINE L1 -1339 6703 6614 2351 88 10 7 chr1 248699780 248700087 -33493577 + AluSx SINE Alu 1 308 -4 204 67 0 0 chr1 248700437 248700467 -33493197 + (TG)n Simple_repeat Simple_repeat 2 31 0 279 0 0 0 chr1 248701261 248701292 -33492372 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 988 146 0 0 chr1 248701292 248701436 -33492228 - AluY SINE Alu -32 279 136 219 234 0 0 chr1 248701508 248701555 -33492109 - MER5A DNA MER1_type -136 53 7 665 260 260 12 chr1 248702116 248702523 -33491141 - L2 LINE L2 0 3313 2806 347 240 80 20 chr1 248702823 248702923 -33490741 - MER91A DNA MER1_type -1 195 90 261 268 14 28 chr1 248702925 248702996 -33490668 - MER91A DNA MER1_type -22 174 105 725 266 6 12 chr1 248703337 248703510 -33490154 + MER5B DNA MER1_type 1 172 -6 2151 113 0 0 chr1 248704741 248705071 -33488593 - AluSg SINE Alu 0 330 1 315 297 115 18 chr1 248706469 248706634 -33487030 + MER5A DNA MER1_type 9 189 0 32 0 0 0 chr1 248706983 248707015 -33486649 + AT_rich Low_complexity Low_complexity 1 32 0 2139 130 3 0 chr1 248707555 248707855 -33485809 + AluSx SINE Alu 1 301 -11 2323 88 0 25 chr1 248707914 248708232 -33485432 + AluSg SINE Alu 1 310 0 332 315 98 7 chr1 248708830 248708973 -33484691 - MIR3 SINE MIR -23 185 30 180 77 0 0 chr1 248710058 248710084 -33483580 + (A)n Simple_repeat Simple_repeat 1 26 0 482 281 85 12 chr1 248711430 248711594 -33482070 - MIR SINE MIR -41 221 46 1748 193 76 0 chr1 248711685 248712078 -33481586 - MER63B DNA MER1_type 0 436 14 2007 118 3 10 chr1 248712226 248712514 -33481150 - AluSx SINE Alu -26 286 1 1767 172 10 23 chr1 248712743 248713046 -33480618 - AluJo SINE Alu -13 299 1 486 316 122 58 chr1 248713430 248714558 -33479106 - L2 LINE L2 -903 2411 1211 225 146 91 0 chr1 248714561 248714616 -33479048 + MIR SINE MIR 67 126 -136 249 291 101 0 chr1 248714626 248714705 -33478959 - MER91C DNA MER1_type -32 108 22 313 196 271 0 chr1 248714709 248714816 -33478848 + MIR SINE MIR 116 251 -11 363 275 159 32 chr1 248714958 248715391 -33478273 + L1ME4a LINE L1 5545 6032 -89 752 263 11 6 chr1 248715393 248715568 -33478096 + MER45A DNA AcHobo 3 178 0 1012 143 183 106 chr1 248715650 248715745 -33477919 + MER7A DNA MER2_type 2 88 -2950 2348 101 0 0 chr1 248715745 248716043 -33477621 - AluSx SINE Alu -14 298 1 1012 143 183 106 chr1 248716043 248716269 -33477395 + MER7A DNA MER2_type 88 346 0 329 357 45 31 chr1 248716421 248716712 -33476952 + L2 LINE L2 1769 2063 -1251 270 70 0 47 chr1 248717640 248717683 -33475981 + Tigger3(Golem) DNA MER2_type 2856 2896 -133 22 56 0 0 chr1 248718717 248718753 -33474911 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr1 248719505 248719530 -33474134 + (TTAAA)n Simple_repeat Simple_repeat 4 28 0 207 100 0 0 chr1 248720070 248720100 -33473564 + (A)n Simple_repeat Simple_repeat 1 30 0 451 299 0 60 chr1 248721319 248721486 -33472178 - MIR SINE MIR -50 212 56 219 125 0 0 chr1 248722867 248722907 -33470757 + (TCTCTG)n Simple_repeat Simple_repeat 1 40 0 1446 92 10 0 chr1 248723390 248723597 -33470067 - L1PA6 LINE L1 -3 6151 5943 2221 110 3 3 chr1 248724942 248725250 -33468414 - AluSg SINE Alu -2 308 1 2055 56 0 22 chr1 248727144 248727412 -33466252 - AluY SINE Alu -11 300 39 583 239 174 20 chr1 248727563 248727764 -33465900 - MIR SINE MIR -14 248 17 837 284 177 19 chr1 248728189 248728742 -33464922 - L2 LINE L2 0 3313 2680 22 35 0 0 chr1 248728755 248728784 -33464880 + AT_rich Low_complexity Low_complexity 1 29 0 372 288 5 103 chr1 248728811 248728995 -33464669 - MIR SINE MIR -66 196 31 201 412 31 0 chr1 248729038 248729135 -33464529 + MIR3 SINE MIR 9 108 -100 774 326 12 0 chr1 248729326 248729568 -33464096 + MIR SINE MIR 18 262 0 347 286 0 40 chr1 248730412 248730538 -33463126 + LTR33 LTR ERVL 26 146 -375 878 218 26 0 chr1 248730617 248730810 -33462854 + LTR33 LTR ERVL 324 521 0 204 340 39 33 chr1 248731172 248731325 -33462339 + L2 LINE L2 3152 3305 -8 623 147 70 0 chr1 248732397 248732526 -33461138 + FRAM SINE Alu 31 168 -8 1901 157 0 29 chr1 248732586 248732899 -33460765 - AluJb SINE Alu -8 304 1 2282 109 3 0 chr1 248733155 248733459 -33460205 - AluSp SINE Alu -6 307 3 11401 94 12 1 chr1 248733470 248735868 -33457796 - L1PA7 LINE L1 0 6154 3733 577 224 12 50 chr1 248736582 248736743 -33456921 - MIR SINE MIR 0 262 108 1298 190 127 9 chr1 248737477 248737793 -33455871 + MLT1A1 LTR MaLR 1 353 -12 565 184 86 69 chr1 248739345 248739519 -33454145 + MER5B DNA MER1_type 2 178 0 2196 108 0 3 chr1 248739650 248739946 -33453718 + AluSc SINE Alu 1 295 -14 1959 114 4 11 chr1 248740287 248740606 -33453058 + AluSg1 SINE Alu 31 347 0 1951 126 0 41 chr1 248741589 248741910 -33451754 + AluSx SINE Alu 1 309 0 995 213 73 25 chr1 248742245 248742559 -33451105 - MER46C DNA MER2_type -5 333 5 24 32 0 0 chr1 248742592 248742623 -33451041 + AT_rich Low_complexity Low_complexity 1 31 0 820 79 0 0 chr1 248744275 248744376 -33449288 + AluY SINE Alu 190 290 -21 195 167 0 24 chr1 248747918 248747960 -33445704 - MIR3 SINE MIR 0 208 168 213 224 0 0 chr1 248748985 248749043 -33444621 + (TA)n Simple_repeat Simple_repeat 1 58 0 2684 332 134 13 chr1 248749630 248751505 -33442159 + L2 LINE L2 1078 3187 -126 273 128 0 0 chr1 248751546 248751593 -33442071 + (CA)n Simple_repeat Simple_repeat 1 47 0 191 250 188 38 chr1 248751605 248751685 -33441979 + L2 LINE L2 3214 3305 -8 603 258 139 5 chr1 248752606 248752815 -33440849 + MIR SINE MIR 2 238 -24 22 35 0 0 chr1 248753818 248753847 -33439817 + AT_rich Low_complexity Low_complexity 1 29 0 324 48 0 0 chr1 248754159 248754201 -33439463 + (CA)n Simple_repeat Simple_repeat 2 43 0 185 0 0 39 chr1 248755690 248755716 -33437948 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1236 204 15 30 chr1 248755736 248755887 -33437777 - AluJo SINE Alu -43 269 122 186 43 0 0 chr1 248755887 248755910 -33437754 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1236 204 15 30 chr1 248755910 248756023 -33437641 - AluJo SINE Alu -190 122 9 330 26 0 0 chr1 248756060 248756099 -33437565 + (CA)n Simple_repeat Simple_repeat 2 40 0 273 245 31 31 chr1 248756498 248756596 -33437068 + CT-rich Low_complexity Low_complexity 3 100 0 2266 106 0 28 chr1 248758166 248758488 -33435176 - AluSq SINE Alu 0 313 1 272 346 123 59 chr1 248758942 248759347 -33434317 - L2 LINE L2 -15 3257 2827 376 216 54 0 chr1 248760507 248760618 -33433046 + L1ME LINE L1 5585 5701 -420 1447 335 65 35 chr1 248760649 248761323 -33432341 - L2 LINE L2 -5 3308 2600 1469 213 47 34 chr1 248761323 248761708 -33431956 - MLT1B LTR MaLR 0 390 1 1447 335 65 35 chr1 248761708 248762103 -33431561 - L2 LINE L2 -713 2600 2219 419 214 45 9 chr1 248762096 248762208 -33431456 + L2 LINE L2 2256 2371 -943 * 1363 251 120 52 chr1 248762271 248762814 -33430850 + MLT1E LTR MaLR 1 580 -13 1170 290 145 9 chr1 248762817 248763258 -33430406 + MLT2E LTR ERVL 61 561 -67 674 229 0 0 chr1 248763277 248763395 -33430269 + FLAM_A SINE Alu 1 118 -15 1632 296 81 19 chr1 248763475 248763729 -33429935 + L2 LINE L2 2376 2613 -700 2059 121 21 0 chr1 248763729 248764019 -33429645 - AluSg SINE Alu -14 296 1 1632 296 81 19 chr1 248764019 248764641 -33429023 + L2 LINE L2 2613 3313 0 1155 281 87 40 chr1 248764648 248765279 -33428385 - L2 LINE L2 -1041 2273 1613 892 209 34 11 chr1 248765732 248765909 -33427755 - AluSg/x SINE Alu -5 307 127 322 203 0 0 chr1 248765913 248765977 -33427687 + L1MC4 LINE L1 6640 6703 -1339 846 160 0 0 chr1 248766000 248766125 -33427539 - FLAM_C SINE Alu -18 125 1 339 294 143 0 chr1 248766205 248766331 -33427333 - MIR SINE MIR -62 200 57 439 227 34 0 chr1 248766390 248766509 -33427155 - Charlie1 DNA MER1_type -16 2745 2623 780 258 0 27 chr1 248766513 248766738 -33426926 - Charlie1 DNA MER1_type -2541 220 2 2319 81 0 0 chr1 248767137 248767433 -33426231 + AluY SINE Alu 2 297 -14 286 207 0 69 chr1 248767580 248767667 -33425997 - MLT1A2 LTR MaLR -293 81 1 338 273 117 16 chr1 248767741 248767869 -33425795 + L1M4 LINE L1 4020 4160 -1986 294 306 27 27 chr1 248767958 248768069 -33425595 + MLT1J2 LTR MaLR 100 210 -240 195 265 96 12 chr1 248768620 248768703 -33424961 - MIR SINE MIR -141 121 32 1826 161 33 7 chr1 248770645 248770944 -33422720 + AluJo SINE Alu 1 307 -5 204 366 104 8 chr1 248770982 248771116 -33422548 + L2 LINE L2 3116 3262 -10 263 281 94 82 chr1 248771341 248771512 -33422152 - MLT1H LTR MaLR -254 295 123 189 147 0 0 chr1 248771686 248771720 -33421944 + (CA)n Simple_repeat Simple_repeat 1 34 0 237 221 11 32 chr1 248771858 248771953 -33421711 + L1ME4a LINE L1 6021 6113 -8 216 0 0 0 chr1 248771961 248771985 -33421679 + (TG)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr1 248772765 248772795 -33420869 + AT_rich Low_complexity Low_complexity 1 30 0 2006 127 10 10 chr1 248772833 248773125 -33420539 - AluSx SINE Alu -20 292 1 315 322 0 0 chr1 248773283 248773373 -33420291 - L1MC4 LINE L1 -1339 6703 6614 3560 118 5 5 chr1 248774052 248774603 -33419061 - L1P3 LINE L1 -5903 558 8 423 333 50 47 chr1 248774927 248775341 -33418323 + L2 LINE L2 2828 3313 0 23 0 0 0 chr1 248775386 248775409 -33418255 + AT_rich Low_complexity Low_complexity 1 23 0 465 189 16 31 chr1 248775471 248775598 -33418066 - HsTC2 DNA Tc2 -50 1848 1724 1049 175 160 11 chr1 248775632 248775901 -33417763 - HsTC2 DNA Tc2 -1585 313 5 437 309 18 12 chr1 248776309 248776474 -33417190 - MIR SINE MIR -42 220 55 225 0 0 0 chr1 248777002 248777027 -33416637 + (A)n Simple_repeat Simple_repeat 1 25 0 2201 93 19 16 chr1 248780151 248780462 -33413202 - AluSx SINE Alu 0 312 1 535 271 74 5 chr1 248781224 248781416 -33412248 + MIR SINE MIR 16 218 -44 433 294 22 22 chr1 248781599 248781783 -33411881 - L2 LINE L2 -178 3135 2952 2160 85 17 0 chr1 248782338 248782631 -33411033 - L1PA10 LINE L1 -3 6165 5868 180 97 0 0 chr1 248786491 248786522 -33407142 + (TG)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr1 248786718 248786739 -33406925 + (A)n Simple_repeat Simple_repeat 1 21 0 244 289 58 29 chr1 248787038 248787142 -33406522 - MIR SINE MIR -51 211 105 368 296 91 0 chr1 248787207 248787339 -33406325 - L2 LINE L2 -759 2555 2412 1989 140 0 0 chr1 248788418 248788728 -33404936 - AluSx SINE Alu 0 310 1 1807 153 0 14 chr1 248789288 248789582 -33404082 + AluJo SINE Alu 10 299 -13 252 130 0 0 chr1 248790772 248790818 -33402846 + (CTG)n Simple_repeat Simple_repeat 3 48 0 1408 123 0 4 chr1 248791351 248791578 -33402086 + L1PB4 LINE L1 5564 5789 -367 327 25 0 0 chr1 248791718 248791758 -33401906 + (CA)n Simple_repeat Simple_repeat 2 41 0 2163 124 8 19 chr1 248791760 248792124 -33401540 + L1PB4 LINE L1 5795 6154 -2 2119 82 0 4 chr1 248792224 248792493 -33401171 - AluY SINE Alu -43 268 1 186 307 11 57 chr1 248792494 248792582 -33401082 + L2 LINE L2 2976 3059 -213 1906 196 27 55 chr1 248792634 248793072 -33400592 - MSTB LTR MaLR 0 426 1 8282 189 33 12 chr1 248793072 248794688 -33398976 - MSTB-int LTR MaLR 0 1651 1 245 128 0 0 chr1 248794688 248794727 -33398937 - MSTB LTR MaLR 0 426 388 1056 232 69 0 chr1 248794753 248795099 -33398565 + LTR50 LTR ERVL 344 795 0 254 268 16 39 chr1 248795236 248795363 -33398301 - L1ME4a LINE L1 -48 6073 5950 432 276 57 68 chr1 248795583 248795775 -33397889 - MIR SINE MIR -71 191 2 266 255 11 28 chr1 248796657 248796795 -33396869 + L1ME LINE L1 5689 5818 -303 194 0 39 0 chr1 248797314 248797340 -33396324 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 310 264 11 22 chr1 248799046 248799137 -33394527 + CT-rich Low_complexity Low_complexity 3 92 0 227 177 16 0 chr1 248799266 248799328 -33394336 + CT-rich Low_complexity Low_complexity 2 64 0 2043 137 36 30 chr1 248799619 248799954 -33393710 - MER1B DNA MER1_type 0 337 1 192 40 0 0 chr1 248800122 248800147 -33393517 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 183 92 31 62 chr1 248801326 248801391 -33392273 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 0 0 0 chr1 248801862 248801884 -33391780 + AT_rich Low_complexity Low_complexity 1 22 0 2272 80 24 0 chr1 248802424 248802713 -33390951 + AluSg SINE Alu 1 296 -14 534 322 26 37 chr1 248803761 248804034 -33389630 + L2 LINE L2 2189 2458 -856 337 259 125 0 chr1 248804358 248804470 -33389194 + L2 LINE L2 3188 3313 0 469 303 61 0 chr1 248804475 248804607 -33389057 - MIR SINE MIR -77 185 46 3330 186 98 10 chr1 248804924 248805649 -33388015 + MER6 DNA MER2_type 3 791 -74 598 212 33 0 chr1 248805810 248805961 -33387703 + MER6 DNA MER2_type 710 865 0 2393 17 0 24 chr1 248806989 248807276 -33386388 - AluYb8 SINE Alu 0 318 39 596 139 0 20 chr1 248807276 248807368 -33386296 - AluSc SINE Alu -14 295 204 578 294 44 3 chr1 248807771 248807998 -33385666 + MIR SINE MIR 12 250 -12 547 318 42 4 chr1 248809815 248810051 -33383613 + MIR SINE MIR 3 247 -15 22 0 0 0 chr1 248810391 248810413 -33383251 + AT_rich Low_complexity Low_complexity 1 22 0 378 298 48 0 chr1 248810945 248811069 -33382595 - MIR SINE MIR -70 192 63 228 86 0 0 chr1 248811191 248811226 -33382438 + (TC)n Simple_repeat Simple_repeat 2 36 0 582 14 0 0 chr1 248811851 248811920 -33381744 - L1PA4 LINE L1 -1030 5116 5048 7689 27 0 0 chr1 248811920 248812948 -33380716 + L1PA4 LINE L1 5128 6155 0 610 292 76 14 chr1 248813142 248813349 -33380315 + MIR SINE MIR 34 250 -12 1088 114 97 0 chr1 248813694 248813870 -33379794 + MER30 DNA MER1_type 1 193 -37 494 304 38 13 chr1 248814241 248814399 -33379265 - MER5B DNA MER1_type -14 164 3 533 241 102 49 chr1 248815245 248815409 -33378255 - MIR SINE MIR -57 205 36 827 122 0 0 chr1 248815767 248815882 -33377782 + AluSg SINE Alu 1 115 -195 201 74 0 0 chr1 248816014 248816041 -33377623 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2288 90 3 10 chr1 248817077 248817378 -33376286 + AluSp SINE Alu 1 299 -14 22 56 0 0 chr1 248819067 248819103 -33374561 + AT_rich Low_complexity Low_complexity 1 36 0 224 231 0 19 chr1 248819432 248819484 -33374180 + CT-rich Low_complexity Low_complexity 4 54 0 1073 335 112 21 chr1 248819487 248820247 -33373417 + L2 LINE L2 2149 2977 -337 310 320 13 0 chr1 248820561 248820639 -33373025 + L2 LINE L2 3157 3235 -37 189 382 81 49 chr1 248820683 248820806 -33372858 - L2 LINE L2 -38 3234 3108 228 368 103 19 chr1 248822193 248822348 -33371316 - L2 LINE L2 -1 3271 3104 30 69 0 0 chr1 248822933 248822991 -33370673 + AT_rich Low_complexity Low_complexity 1 58 0 5341 250 75 26 chr1 248874907 248878151 -33315513 + L1ME1 LINE L1 2635 6071 -95 927 310 96 56 chr1 248878149 248879472 -33314192 - HAL1 LINE L1 -1043 1464 89 * 223 355 9 100 chr1 248879730 248879961 -33313703 + L2 LINE L2 2977 3186 -86 682 41 65 0 chr1 248879989 248880112 -33313552 + (TA)n Simple_repeat Simple_repeat 2 132 0 2404 56 0 0 chr1 248880112 248880397 -33313267 - AluY SINE Alu -22 289 5 234 62 0 0 chr1 248880791 248880823 -33312841 + (TG)n Simple_repeat Simple_repeat 2 33 0 2105 135 0 16 chr1 248883421 248883739 -33309925 + AluSq SINE Alu 1 313 0 6020 116 14 3 chr1 248884566 248885541 -33308123 + L1P3 LINE L1 4463 5451 -721 1069 127 0 30 chr1 248885587 248885752 -33307912 + AluSq SINE Alu 1 160 -153 5365 100 4 7 chr1 248885753 248886521 -33307143 + L1PA10 LINE L1 5392 6157 -11 288 357 42 7 chr1 248887334 248887477 -33306187 - MIR3 SINE MIR -7 201 54 1722 187 3 7 chr1 248889752 248890057 -33303607 - AluJo SINE Alu -6 306 3 1794 174 27 0 chr1 248890916 248891214 -33302450 + AluJb SINE Alu 1 306 -6 501 305 11 11 chr1 248893268 248893442 -33300222 + HAL1b LINE L1 385 558 -790 234 330 54 0 chr1 248893542 248893654 -33300010 + HAL1b LINE L1 598 715 -633 7110 199 12 5 chr1 248894125 248895650 -33298014 + L1PB1 LINE L1 2523 4058 -2088 2616 92 28 14 chr1 248895650 248896009 -33297655 - THE1B LTR MaLR 0 364 1 11623 98 5 6 chr1 248896014 248897590 -33296074 - THE1B-int LTR MaLR -6 1574 1 2467 104 36 14 chr1 248897590 248897946 -33295718 - THE1B LTR MaLR 0 364 1 5502 160 18 39 chr1 248897946 248898013 -33295651 + L1PB1 LINE L1 4054 4121 -2030 2594 201 24 64 chr1 248898013 248898651 -33295013 - LTR9 LTR ERV1 0 612 1 5502 160 18 39 chr1 248898651 248900378 -33293286 + L1PB1 LINE L1 4121 5801 -350 414 0 0 0 chr1 248900378 248900424 -33293240 + (TG)n Simple_repeat Simple_repeat 2 47 0 5502 160 18 39 chr1 248900424 248900733 -33292931 + L1PB1 LINE L1 5801 6115 -36 2552 142 45 10 chr1 248900895 248901551 -33292113 - MER72 LTR ERV1 0 722 12 1824 150 52 30 chr1 248901829 248902196 -33291468 + THE1C LTR MaLR 1 375 0 952 196 15 15 chr1 248902381 248902580 -33291084 - MLT1B LTR MaLR 0 390 192 356 217 109 33 chr1 248902660 248902696 -33290968 - MLT1B LTR MaLR -252 138 106 1148 161 19 103 chr1 248902696 248902803 -33290861 - MER8 DNA MER2_type 0 239 125 2147 111 0 0 chr1 248902803 248903092 -33290572 + AluY SINE Alu 6 294 -17 1148 161 19 103 chr1 248903092 248903245 -33290419 - MER8 DNA MER2_type -114 125 1 356 217 109 33 chr1 248903245 248903300 -33290364 - MLT1B LTR MaLR -284 106 40 1812 180 116 30 chr1 248903407 248903812 -33289852 + MSTB2 LTR MaLR 18 457 0 1253 220 27 39 chr1 248903857 248904005 -33289659 + MER58B DNA MER1_type 2 150 -2270 529 90 26 0 chr1 248904005 248904083 -33289581 + MADE1 DNA Mariner 1 80 0 1253 220 27 39 chr1 248904083 248904271 -33289393 + MER58B DNA MER1_type 150 334 -7 334 312 128 62 chr1 248904948 248905384 -33288280 - MLT1J LTR MaLR -42 469 5 2393 84 0 0 chr1 248905384 248905681 -33287983 - AluSc SINE Alu -10 299 3 2734 34 0 0 chr1 248905794 248906122 -33287542 + L1PA5 LINE L1 5827 6154 0 332 359 118 6 chr1 248906273 248906443 -33287221 - MIR SINE MIR -48 214 26 251 270 0 16 chr1 248907170 248907233 -33286431 + GA-rich Low_complexity Low_complexity 1 62 0 661 198 25 0 chr1 248907238 248907359 -33286305 + FLAM_C SINE Alu 1 124 -19 440 282 109 49 chr1 248908018 248908284 -33285380 - Charlie8 DNA MER1_type -2135 282 1 1383 250 43 37 chr1 248912092 248912556 -33281108 + MLT1C LTR MaLR 1 467 0 891 247 78 0 chr1 248912620 248912839 -33280825 - MIR SINE MIR -25 237 2 291 140 0 0 chr1 248912844 248912894 -33280770 + (TAA)n Simple_repeat Simple_repeat 3 52 0 244 209 0 0 chr1 248913096 248913139 -33280525 - tRNA-Ile-ATT tRNA tRNA -3 74 32 267 303 40 109 chr1 248913517 248913692 -33279972 - MIR3 SINE MIR -14 194 32 2167 89 10 16 chr1 248913829 248914142 -33279522 - AluY SINE Alu 0 311 1 198 291 58 29 chr1 248915309 248915412 -33278252 - L2 LINE L2 -188 3084 2979 2253 188 26 2 chr1 248916195 248916611 -33277053 + MSTB LTR MaLR 1 426 0 23 0 0 0 chr1 248918871 248918894 -33274770 + AT_rich Low_complexity Low_complexity 1 23 0 321 123 98 0 chr1 248919402 248919524 -33274140 + (TA)n Simple_repeat Simple_repeat 2 135 0 288 237 158 18 chr1 248919557 248919671 -33273993 + L2 LINE L2 3184 3313 0 270 307 119 75 chr1 248920062 248920473 -33273191 - L2 LINE L2 -32 3240 2812 392 194 25 181 chr1 248920610 248920770 -33272894 - MIR3 SINE MIR -39 169 35 981 25 0 0 chr1 248924367 248924486 -33269178 - L1P LINE L1 -1057 5089 4971 1097 129 0 6 chr1 248924487 248924650 -33269014 + AluSq SINE Alu 120 281 -32 240 35 0 0 chr1 248924650 248924679 -33268985 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 1974 141 3 0 chr1 248924688 248924985 -33268679 - AluSx SINE Alu -14 298 1 231 309 0 0 chr1 248925709 248925777 -33267887 + MIR SINE MIR 81 148 -60 25 75 0 0 chr1 248926001 248926054 -33267610 + AT_rich Low_complexity Low_complexity 1 53 0 497 99 0 0 chr1 248926689 248926760 -33266904 + MADE1 DNA Mariner 10 80 0 308 291 72 81 chr1 248927047 248927462 -33266202 - L1M4 LINE L1 -1088 5058 4648 2328 63 0 48 chr1 248927462 248927794 -33265870 + L1PA8 LINE L1 5857 6172 0 308 291 72 81 chr1 248927794 248927944 -33265720 - L1M4 LINE L1 -1498 4648 4498 718 297 44 0 chr1 248927945 248928127 -33265537 + MIR SINE MIR 2 191 -71 645 282 52 29 chr1 248928691 248929035 -33264629 - L1M4 LINE L1 -2164 3982 3631 352 278 102 23 chr1 248929417 248929593 -33264071 + L2 LINE L2 3075 3264 -49 2492 57 0 0 chr1 248930406 248930702 -33262962 - AluY SINE Alu -15 296 1 189 74 0 0 chr1 248930932 248930959 -33262705 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr1 248932891 248932915 -33260749 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 248937426 248937464 -33256200 + AT_rich Low_complexity Low_complexity 1 38 0 231 362 72 60 chr1 248938506 248938741 -33254923 + L2 LINE L2 3031 3268 -4 327 364 194 12 chr1 248938801 248939043 -33254621 - L2 LINE L2 -26 3246 2961 2000 151 51 0 chr1 248939289 248939620 -33254044 - MER7A DNA MER2_type 0 346 1 2039 130 3 16 chr1 248940950 248941374 -33252290 + AluSx SINE Alu 1 420 0 328 325 58 0 chr1 248945419 248945539 -33248125 + MIR SINE MIR 86 212 -50 1070 281 30 78 chr1 248945940 248946439 -33247225 - L2 LINE L2 0 3313 2839 * 1838 288 60 51 chr1 248946414 248947434 -33246230 - L2 LINE L2 -1047 2267 1239 186 43 0 0 chr1 248948581 248948604 -33245060 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 331 320 95 50 chr1 248949811 248950033 -33243631 - MIR SINE MIR -13 249 18 25 65 0 0 chr1 248950067 248950113 -33243551 + AT_rich Low_complexity Low_complexity 1 46 0 628 297 23 36 chr1 248950429 248950648 -33243016 - L3 LINE CR1 -1 1576 1361 289 213 52 118 chr1 248950675 248950811 -33242853 + MER94 DNA DNA 1 127 -7 362 316 37 7 chr1 248950924 248951060 -33242604 - L3 LINE CR1 -340 1237 1098 218 216 14 0 chr1 248951367 248951441 -33242223 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 329 277 74 14 chr1 248952013 248952161 -33241503 - L1ME4a LINE L1 -18 6103 5947 240 283 76 0 chr1 248952410 248952502 -33241162 - L1ME4a LINE L1 -538 5583 5485 222 202 24 16 chr1 248952514 248952644 -33241020 + (TA)n Simple_repeat Simple_repeat 1 131 0 310 321 0 0 chr1 248952647 248952731 -33240933 - L2 LINE L2 0 3313 3230 1865 179 68 11 chr1 248952779 248953148 -33240516 + L1MC1 LINE L1 5938 6327 -6 224 258 0 93 chr1 248953192 248953289 -33240375 - L2 LINE L2 -216 3097 3010 229 276 337 8 chr1 248953370 248953616 -33240048 - L2 LINE L2 -800 2514 2188 571 273 101 11 chr1 248953896 248954071 -33239593 + MIR SINE MIR 26 213 -49 1108 146 55 67 chr1 248954280 248954810 -33238854 - L1M1 LINE L1 -743 5403 4944 749 145 97 0 chr1 248954826 248954849 -33238815 - L1MA1 LINE L1 -4 6298 6279 612 101 0 0 chr1 248954849 248954938 -33238726 + (TA)n Simple_repeat Simple_repeat 1 89 0 749 145 97 0 chr1 248954938 248955059 -33238605 - L1MA1 LINE L1 -23 6279 6140 1335 117 22 5 chr1 248955061 248955283 -33238381 - L1PA15 LINE L1 -13 6152 5927 188 339 18 0 chr1 248955384 248955440 -33238224 - MIR SINE MIR -186 76 20 341 324 66 35 chr1 248955568 248955824 -33237840 - L2 LINE L2 -40 3273 3010 23 33 0 0 chr1 248956348 248956378 -33237286 + AT_rich Low_complexity Low_complexity 1 30 0 1074 80 0 0 chr1 248956470 248956607 -33237057 - AluSg/x SINE Alu -7 303 167 203 290 16 0 chr1 248957184 248957246 -33236418 + L2 LINE L2 3209 3271 -1 414 322 122 29 chr1 248957415 248957620 -33236044 - MIR SINE MIR -19 243 20 4999 37 0 0 chr1 248958003 248958600 -33235064 + L1PA3 LINE L1 5556 6152 -3 21 0 0 0 chr1 248959804 248959825 -33233839 + AT_rich Low_complexity Low_complexity 1 21 0 1593 179 3 63 chr1 248960064 248960382 -33233282 + AluJo SINE Alu 1 299 -13 1696 184 45 11 chr1 248960663 248961016 -33232648 + MLT1A1 LTR MaLR 1 365 0 405 353 5 26 chr1 248961738 248961928 -33231736 - MIR SINE MIR -57 205 20 418 260 85 34 chr1 248962904 248963081 -33230583 - MIR SINE MIR -17 245 60 21 0 0 0 chr1 248963582 248963603 -33230061 + AT_rich Low_complexity Low_complexity 1 21 0 698 281 47 21 chr1 248964059 248964294 -33229370 + MIR SINE MIR 1 241 -21 184 253 35 81 chr1 248964560 248964647 -33229017 - L2 LINE L2 -2940 374 292 703 237 15 61 chr1 248964986 248965184 -33228480 - MER5A DNA MER1_type 0 189 1 319 350 8 8 chr1 248965184 248965301 -33228363 - MIR3 SINE MIR -48 160 44 399 263 136 100 chr1 248965576 248966127 -33227537 - MLT1K LTR MaLR -16 572 2 830 128 8 0 chr1 248966305 248966422 -33227242 - FLAM_C SINE Alu -25 118 1 580 92 0 0 chr1 248968378 248968465 -33225199 + Alu SINE Alu 224 310 -2 207 0 0 0 chr1 248968630 248968653 -33225011 + (A)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr1 248969125 248969147 -33224517 + AT_rich Low_complexity Low_complexity 1 22 0 835 210 34 0 chr1 248969228 248969404 -33224260 + L1PA16 LINE L1 5976 6157 -9 24 0 0 0 chr1 248969404 248969428 -33224236 + AT_rich Low_complexity Low_complexity 1 24 0 193 338 29 15 chr1 248969694 248969762 -33223902 - L2 LINE L2 -50 3222 3154 331 200 78 63 chr1 248970318 248970447 -33223217 + MLT1H1 LTR MaLR 400 542 -13 423 305 71 25 chr1 248971278 248971475 -33222189 - MIR SINE MIR -37 225 20 596 350 77 14 chr1 248973322 248973619 -33220045 - L2 LINE L2 0 3272 2957 24 32 0 0 chr1 248975633 248975664 -33218000 + AT_rich Low_complexity Low_complexity 1 31 0 277 125 31 47 chr1 248975950 248976014 -33217650 + L1MC4 LINE L1 6640 6702 -1340 24 53 0 0 chr1 248976425 248976463 -33217201 + AT_rich Low_complexity Low_complexity 1 38 0 998 202 0 45 chr1 248977464 248977662 -33216002 + AluJo SINE Alu 85 273 -39 474 355 16 11 chr1 248977989 248978178 -33215486 + MIR SINE MIR 3 192 -70 192 366 15 30 chr1 248980465 248980596 -33213068 + MER5A DNA MER1_type 21 149 -40 27 0 0 0 chr1 248982061 248982088 -33211576 + AT_rich Low_complexity Low_complexity 1 27 0 355 111 0 0 chr1 248982786 248982840 -33210824 + L1MC1 LINE L1 6262 6315 -18 1874 232 97 40 chr1 248983542 248984098 -33209566 - MLT1E LTR MaLR 0 593 6 408 289 18 0 chr1 248985425 248985539 -33208125 + LTR67 LTR ERVL 430 545 -12 243 203 27 14 chr1 248985558 248985632 -33208032 + HAL1b LINE L1 1213 1287 -61 844 254 72 0 chr1 248985757 248985966 -33207698 + MER58A DNA MER1_type 1 224 0 741 151 40 0 chr1 248988279 248988405 -33205259 + MER3 DNA MER1_type 38 168 -41 1540 170 61 19 chr1 248988406 248988674 -33204990 + MER3 DNA MER1_type 2233 2523 -101 1884 146 7 17 chr1 248988674 248988975 -33204689 - AluSx SINE Alu -14 298 1 1540 170 61 19 chr1 248988975 248989082 -33204582 + MER3 DNA MER1_type 2523 2624 0 227 156 125 16 chr1 248990028 248990092 -33203572 + LTR66 LTR ERVL 368 438 -172 29 0 0 0 chr1 248990802 248990831 -33202833 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr1 248991331 248991357 -33202307 + AT_rich Low_complexity Low_complexity 1 26 0 621 309 108 25 chr1 248991526 248992122 -33201542 + L1ME4a LINE L1 5322 5986 -135 2071 116 7 20 chr1 248992142 248992443 -33201221 - AluSg1 SINE Alu -10 299 3 13106 38 1 6 chr1 248992554 248993486 -33200178 - L1P LINE L1 -2856 3290 2369 2805 22 0 0 chr1 248993486 248993804 -33199860 - AluYb8 SINE Alu 0 318 1 13106 38 1 6 chr1 248993804 248994527 -33199137 - L1P LINE L1 -3777 2369 1644 8617 30 0 0 chr1 248994527 248996361 -33197303 + L1PA4 LINE L1 4313 6153 -2 371 320 85 13 chr1 248996419 248996683 -33196981 + L2 LINE L2 2775 3060 -212 25 0 0 0 chr1 248998043 248998068 -33195596 + AT_rich Low_complexity Low_complexity 1 25 0 302 277 8 50 chr1 249000751 249000870 -33192794 - L1ME4a LINE L1 -2 6119 6006 25 0 0 0 chr1 249001983 249002008 -33191656 + AT_rich Low_complexity Low_complexity 1 25 0 412 354 94 28 chr1 249002944 249003517 -33190147 + L1MC4a LINE L1 4405 5015 -1131 1641 256 85 33 chr1 249003591 249004227 -33189437 + L1MC4a LINE L1 5260 5928 -1880 671 235 48 18 chr1 249007132 249007298 -33186366 - MER5A DNA MER1_type -14 175 5 186 300 178 22 chr1 249007250 249007430 -33186234 + L3 LINE CR1 1058 1265 -312 * 369 207 0 0 chr1 249008060 249008142 -33185522 + (CA)n Simple_repeat Simple_repeat 1 82 0 1975 149 0 0 chr1 249009307 249009603 -33184061 - AluSg SINE Alu -14 296 1 213 333 85 23 chr1 249009660 249009837 -33183827 - MIR SINE MIR -73 189 2 219 189 19 0 chr1 249010465 249010518 -33183146 + T-rich Low_complexity Low_complexity 2 55 0 183 129 0 0 chr1 249011667 249011698 -33181966 + (T)n Simple_repeat Simple_repeat 1 31 0 220 284 0 86 chr1 249013318 249013399 -33180265 - MIR SINE MIR -25 237 164 881 153 0 0 chr1 249013610 249013741 -33179923 + FLAM_C SINE Alu 1 131 -12 372 298 80 33 chr1 249014199 249014350 -33179314 + LTR50 LTR ERVL 26 183 -612 230 309 8 32 chr1 249014615 249014738 -33178926 + LTR33A LTR ERVL 404 523 0 216 0 0 0 chr1 249015779 249015803 -33177861 + (TTC)n Simple_repeat Simple_repeat 2 25 0 330 45 0 0 chr1 249016084 249016128 -33177536 + (CA)n Simple_repeat Simple_repeat 1 44 0 192 152 0 0 chr1 249016383 249016416 -33177248 + CT-rich Low_complexity Low_complexity 2 34 0 291 28 0 0 chr1 249016683 249016719 -33176945 + (CA)n Simple_repeat Simple_repeat 1 36 0 8040 174 25 19 chr1 249017087 249019737 -33173927 - L1PA16 LINE L1 -5 6161 3511 518 219 52 0 chr1 249019807 249019962 -33173702 + L1 LINE L1 3337 3499 -2647 617 266 80 0 chr1 249019967 249020155 -33173509 - L1 LINE L1 -3029 3117 2915 38 40 0 27 chr1 249020214 249020259 -33173405 + AT_rich Low_complexity Low_complexity 1 45 -27 1972 136 0 20 chr1 249020259 249020553 -33173111 - AluSg SINE Alu -22 288 1 38 40 0 27 chr1 249020553 249020581 -33173083 + AT_rich Low_complexity Low_complexity 45 72 0 1743 204 0 3 chr1 249020586 249020880 -33172784 + AluJb SINE Alu 1 293 -19 286 385 36 0 chr1 249020891 249021057 -33172607 - MIR SINE MIR -19 243 72 1431 208 66 55 chr1 249021714 249022140 -33171524 - THE1B LTR MaLR 0 428 1 213 354 61 11 chr1 249022178 249022359 -33171305 - L2 LINE L2 -504 2810 2621 843 193 39 0 chr1 249022728 249022909 -33170755 + L1MD1 LINE L1 6055 6242 0 379 249 75 90 chr1 249022990 249023191 -33170473 - MIR SINE MIR -41 221 24 984 267 97 71 chr1 249023311 249024113 -33169551 - L1ME3A LINE L1 -92 6078 5256 307 210 226 0 chr1 249024214 249024338 -33169326 - L1ME3A LINE L1 -3728 2418 2267 235 258 62 62 chr1 249024637 249024765 -33168899 + L1MC/D LINE L1 5784 5911 -1897 211 274 37 89 chr1 249024982 249025117 -33168547 + MIR SINE MIR 106 233 -29 348 355 9 9 chr1 249025496 249025603 -33168061 - L2 LINE L2 -32 3240 3134 2192 102 0 40 chr1 249025745 249026069 -33167595 - AluSq SINE Alu -2 311 1 891 272 66 60 chr1 249026496 249027011 -33166653 - LTR33 LTR ERVL -3 518 1 24 32 0 0 chr1 249027983 249028014 -33165650 + AT_rich Low_complexity Low_complexity 1 31 0 300 304 82 65 chr1 249028202 249028386 -33165278 + MIR SINE MIR 2 188 -74 192 125 0 0 chr1 249028415 249028447 -33165217 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1650 154 0 85 chr1 249028935 249029254 -33164410 - AluSx SINE Alu -20 292 1 343 306 65 16 chr1 249029628 249029752 -33163912 - L2 LINE L2 0 3313 3184 22 88 0 0 chr1 249029810 249029867 -33163797 + AT_rich Low_complexity Low_complexity 1 57 0 373 303 63 27 chr1 249030483 249030704 -33162960 + L1MC4a LINE L1 5702 5930 -1878 3145 177 62 11 chr1 249030831 249031493 -33162171 - L1MB2 LINE L1 0 6171 5476 309 247 25 12 chr1 249031508 249031589 -33162075 - L2 LINE L2 -10 3262 3181 222 287 10 59 chr1 249032727 249032828 -33160836 - MER5B DNA MER1_type -80 98 3 2430 88 0 0 chr1 249033562 249033868 -33159796 - AluY SINE Alu -5 306 1 235 374 24 16 chr1 249033875 249033998 -33159666 - MIR SINE MIR -63 145 22 23 33 0 0 chr1 249035350 249035380 -33158284 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chr1 249036318 249036357 -33157307 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr1 249038660 249038690 -33154974 + AT_rich Low_complexity Low_complexity 1 30 0 1862 160 3 0 chr1 249038725 249039025 -33154639 - AluSx SINE Alu -9 303 3 198 0 0 0 chr1 249039377 249039399 -33154265 + (T)n Simple_repeat Simple_repeat 1 22 0 225 345 69 17 chr1 249039514 249039630 -33154034 - L2 LINE L2 -2 3270 3149 539 305 36 6 chr1 249040180 249040347 -33153317 - MIR3 SINE MIR -6 202 31 335 305 11 0 chr1 249042582 249042677 -33150987 - MIR3 SINE MIR -8 200 105 323 303 55 0 chr1 249044010 249044119 -33149545 + L2 LINE L2 3199 3313 0 1030 315 64 20 chr1 249046244 249046771 -33146893 - L2 LINE L2 -237 3076 2530 2325 67 6 16 chr1 249046872 249047185 -33146479 + L1PA7 LINE L1 5845 6154 0 526 311 159 33 chr1 249047189 249047981 -33145683 - L2 LINE L2 -569 2745 1854 212 269 26 51 chr1 249048360 249048438 -33145226 + L2 LINE L2 3238 3313 0 232 258 23 159 chr1 249048734 249048866 -33144798 - MIR SINE MIR -67 141 78 2510 258 129 13 chr1 249049516 249050431 -33143233 - L2 LINE L2 -926 2388 1368 300 273 52 0 chr1 249050565 249050642 -33143022 + L2 LINE L2 2894 2974 -298 187 158 18 18 chr1 249050812 249050869 -33142795 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 2118 143 49 33 chr1 249051791 249052216 -33141448 - MSTB1 LTR MaLR 0 432 1 782 169 70 41 chr1 249052308 249052480 -33141184 - MLT2C2 LTR ERVL -8 456 280 739 72 10 0 chr1 249052481 249052578 -33141086 - THE1B LTR MaLR -1 363 266 303 300 32 63 chr1 249055279 249055341 -33138323 - L1MEc LINE L1 -3998 2398 2336 1919 158 48 0 chr1 249055341 249055671 -33137993 - MER7A DNA MER2_type 0 346 3 4216 184 38 13 chr1 249055678 249056518 -33137146 + MER6 DNA MER2_type 1 861 -4 303 300 32 63 chr1 249056518 249056700 -33136964 - L1MEc LINE L1 -4066 2330 2154 752 312 21 17 chr1 249057500 249057737 -33135927 + MIR SINE MIR 12 249 -13 662 228 19 31 chr1 249058576 249058738 -33134926 - MER5B DNA MER1_type -2 176 17 233 372 78 0 chr1 249060004 249060133 -33133531 - MER5A DNA MER1_type -49 140 2 245 224 0 17 chr1 249060370 249060428 -33133236 - MER5A DNA MER1_type -83 106 50 180 0 0 0 chr1 249060490 249060510 -33133154 + (CAA)n Simple_repeat Simple_repeat 2 21 0 279 217 22 22 chr1 249061091 249061183 -33132481 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 190 339 102 0 chr1 249061318 249061436 -33132228 + L2 LINE L2 3184 3313 0 1368 266 54 14 chr1 249062038 249062462 -33131202 - MLT1J LTR MaLR -70 441 1 1045 134 23 17 chr1 249062582 249062754 -33130910 - AluSc SINE Alu -17 292 120 183 42 0 0 chr1 249062758 249062782 -33130882 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 853 111 0 0 chr1 249062782 249062890 -33130774 - AluSq/x SINE Alu -184 128 21 21 57 0 0 chr1 249063131 249063166 -33130498 + AT_rich Low_complexity Low_complexity 1 35 0 213 94 0 0 chr1 249063479 249063511 -33130153 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chr1 249066912 249066932 -33126732 + (A)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr1 249067130 249067171 -33126493 + AT_rich Low_complexity Low_complexity 1 41 0 237 180 0 0 chr1 249068016 249068066 -33125598 + T-rich Low_complexity Low_complexity 1 50 0 258 379 92 24 chr1 249069108 249069446 -33124218 - L2 LINE L2 -963 2351 1991 2521 58 0 3 chr1 249069507 249069851 -33123813 + AluY SINE Alu 1 343 0 322 224 15 0 chr1 249069980 249070047 -33123617 - MIR SINE MIR -68 194 127 455 291 34 14 chr1 249070075 249070223 -33123441 - MIR SINE MIR -106 156 6 1353 147 5 0 chr1 249074107 249074318 -33119346 - MER2 DNA MER2_type -133 212 1 405 0 0 0 chr1 249074318 249074363 -33119301 + (CA)n Simple_repeat Simple_repeat 1 45 0 292 109 0 0 chr1 249074792 249074838 -33118826 - MADE1 DNA Mariner 0 80 35 231 265 69 34 chr1 249075140 249075234 -33118430 - MIR SINE MIR -68 140 58 253 351 0 0 chr1 249075266 249075343 -33118321 - L2 LINE L2 -52 3220 3144 521 251 48 42 chr1 249075496 249075663 -33118001 - MIR SINE MIR -77 185 18 247 383 17 17 chr1 249076062 249076182 -33117482 + L2 LINE L2 3104 3223 -49 326 325 102 38 chr1 249076933 249077090 -33116574 - MIR SINE MIR -94 168 2 1051 226 25 25 chr1 249077150 249077429 -33116235 - MLT1B LTR MaLR 0 390 112 261 286 140 30 chr1 249077999 249078335 -33115329 - L1ME4a LINE L1 -193 5928 5556 33 66 0 0 chr1 249078343 249078404 -33115260 + AT_rich Low_complexity Low_complexity 1 61 0 369 62 0 0 chr1 249080135 249080183 -33113481 + (TG)n Simple_repeat Simple_repeat 2 49 0 825 269 43 0 chr1 249081491 249081725 -33111939 - L1ME3A LINE L1 -13 6157 5914 1689 123 30 0 chr1 249081737 249082005 -33111659 + HSMAR2 DNA Mariner 2 277 -1025 2144 127 39 33 chr1 249082957 249083319 -33110345 + THE1B LTR MaLR 1 364 0 2663 85 95 5 chr1 249084191 249084602 -33109062 + LTR7 LTR ERV1 1 448 -2 16650 101 27 21 chr1 249084604 249087448 -33106216 + HERVH LTR ERV1 1 2987 -4726 871 141 18 47 chr1 249087420 249087590 -33106074 + HERVH LTR ERV1 3126 3290 -4423 * 3356 97 6 20 chr1 249087580 249088020 -33105644 + HERVH LTR ERV1 3492 3926 -3787 1499 12 0 0 chr1 249088020 249088186 -33105478 - AluYb8 SINE Alu -4 314 149 3356 97 6 20 chr1 249088186 249088253 -33105411 + HERVH LTR ERV1 3926 3992 -3721 4334 137 9 1 chr1 249088256 249088913 -33104751 + HERVH LTR ERV1 4488 5149 -2564 1352 134 18 5 chr1 249088914 249089131 -33104533 + HERVH LTR ERV1 5600 5819 -1894 1563 140 51 34 chr1 249089267 249089559 -33104105 - THE1B LTR MaLR -67 297 1 1993 223 114 67 chr1 249089590 249090273 -33103391 - MER21B LTR ERV1 -83 848 2 1667 157 18 14 chr1 249090274 249090555 -33103109 - MLT2C2 LTR ERVL -182 282 1 341 322 7 49 chr1 249091163 249091306 -33102358 - MIR3 SINE MIR -36 172 36 274 288 0 0 chr1 249091758 249091817 -33101847 - L2 LINE L2 -4 3268 3210 21 0 0 0 chr1 249091939 249091960 -33101704 + AT_rich Low_complexity Low_complexity 1 21 0 390 280 109 58 chr1 249092171 249092564 -33101100 + LTR33 LTR ERVL 106 518 -3 210 128 0 0 chr1 249093482 249093521 -33100143 + (TG)n Simple_repeat Simple_repeat 2 40 0 232 276 8 0 chr1 249093521 249093620 -33100044 + GA-rich Low_complexity Low_complexity 1 99 0 4352 63 0 4 chr1 249094402 249094960 -33098704 - L1PA5 LINE L1 -4 6150 5595 1813 45 0 0 chr1 249094960 249095180 -33098484 + L1PA5 LINE L1 5377 5596 -558 234 0 0 0 chr1 249099030 249099056 -33094608 + (TC)n Simple_repeat Simple_repeat 1 26 0 952 141 0 23 chr1 249099571 249099748 -33093916 + L1MB3 LINE L1 6010 6182 -1 296 313 73 20 chr1 249100238 249100388 -33093276 - MER91A DNA MER1_type -36 160 3 269 281 11 47 chr1 249100809 249100901 -33092763 + MER5A DNA MER1_type 75 174 -15 614 235 59 41 chr1 249101693 249101914 -33091750 + MIR SINE MIR 29 253 -9 341 238 25 8 chr1 249102255 249102377 -33091287 + (TA)n Simple_repeat Simple_repeat 2 125 0 24 91 0 0 chr1 249102426 249102492 -33091172 + AT_rich Low_complexity Low_complexity 1 66 0 1707 92 64 4 chr1 249104567 249104848 -33088816 + HSMAR2 DNA Mariner 1003 1300 -2 219 218 0 0 chr1 249105283 249105338 -33088326 + (TA)n Simple_repeat Simple_repeat 1 55 0 2247 166 104 2 chr1 249106169 249106592 -33087072 - MLT1C LTR MaLR 0 467 2 1295 199 38 115 chr1 249106845 249107348 -33086316 - MLT1C LTR MaLR -3 464 1 1422 133 64 17 chr1 249107904 249108137 -33085527 - AluJb SINE Alu -10 302 59 292 342 29 67 chr1 249108184 249108424 -33085240 + L2 LINE L2 2808 3038 -234 567 227 59 71 chr1 249108500 249108738 -33084926 - MLT1J1 LTR MaLR -61 385 151 1720 233 88 11 chr1 249108744 249109295 -33084369 - MLT1E2 LTR MaLR -50 576 1 333 306 65 0 chr1 249109335 249109443 -33084221 + MIR SINE MIR 105 219 -43 186 200 0 44 chr1 249109591 249109636 -33084028 - L2 LINE L2 -1 3312 3270 516 107 5 59 chr1 249111107 249111294 -33082370 + (TA)n Simple_repeat Simple_repeat 1 177 0 506 94 32 53 chr1 249111306 249111786 -33081878 + (TA)n Simple_repeat Simple_repeat 1 469 0 654 97 0 0 chr1 249111797 249111890 -33081774 - L1P4 LINE L1 -376 5787 5695 2005 132 4 0 chr1 249113339 249113658 -33080006 - AluSx SINE Alu 0 320 1 323 328 2 74 chr1 249113667 249113842 -33079822 - MIR SINE MIR -63 145 28 1795 196 28 45 chr1 249114295 249114692 -33078972 - MLT1B LTR MaLR 0 390 1 315 345 88 6 chr1 249114974 249115145 -33078519 + L2 LINE L2 3124 3308 -5 21 71 0 0 chr1 249115426 249115468 -33078196 + AT_rich Low_complexity Low_complexity 1 42 0 1358 279 58 48 chr1 249316247 249316763 -32876901 - MLT1E LTR MaLR -72 521 1 351 228 98 32 chr1 249316768 249316891 -32876773 - MLT1H LTR MaLR 0 593 463 526 311 8 66 chr1 249316981 249317238 -32876426 - MLT1H LTR MaLR -285 264 23 338 252 216 27 chr1 249317257 249317368 -32876296 - MIR SINE MIR -108 154 23 182 278 139 35 chr1 249317872 249317987 -32875677 + L2 LINE L2 2712 2838 -476 763 178 11 19 chr1 249318459 249318825 -32874839 + GA-rich Low_complexity Low_complexity 1 363 0 469 297 147 45 chr1 249318966 249319437 -32874227 - L1M4 LINE L1 -5940 602 84 1697 186 3 0 chr1 249319546 249319831 -32873833 - AluSx SINE Alu -24 288 3 1309 216 14 24 chr1 249321542 249321833 -32871831 + AluJo SINE Alu 3 290 -22 1595 179 7 13 chr1 249323295 249323597 -32870067 - AluSc SINE Alu -7 302 3 349 383 63 30 chr1 249324442 249324745 -32868919 + L2 LINE L2 2946 3258 -14 1003 269 33 0 chr1 249324955 249325226 -32868438 + AluJb SINE Alu 1 280 -32 2196 171 25 36 chr1 249325438 249325897 -32867767 + LTR22B LTR ERVK 48 492 0 317 250 52 29 chr1 249326164 249326300 -32867364 + L1MC3 LINE L1 5880 6018 -1767 1118 124 21 16 chr1 249326428 249326614 -32867050 + AluY SINE Alu 2 188 -123 1971 208 31 7 chr1 249326714 249327137 -32866527 + LTR22 LTR ERVK 146 578 -2 546 171 138 48 chr1 249327169 249327379 -32866285 - MER52C LTR ERV1 -160 1118 890 802 223 41 77 chr1 249327383 249327801 -32865863 - L1M4 LINE L1 -942 5204 4802 23 33 0 0 chr1 249328877 249328907 -32864757 + AT_rich Low_complexity Low_complexity 1 30 0 1726 170 3 0 chr1 249329586 249329869 -32863795 - AluSg SINE Alu -26 284 1 1315 180 9 0 chr1 249329935 249330157 -32863507 + AluSx SINE Alu 3 226 -86 192 200 0 0 chr1 249330186 249330226 -32863438 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 291 191 0 0 chr1 249330236 249330304 -32863360 + (CA)n Simple_repeat Simple_repeat 2 69 0 323 167 9 185 chr1 249332807 249333034 -32860630 - MER53 DNA DNA -1 188 2 2129 57 43 14 chr1 249335606 249335931 -32857733 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 249335932 249335957 -32857707 + (TA)n Simple_repeat Simple_repeat 1 25 0 570 106 0 87 chr1 249335957 249336061 -32857603 + AluY SINE Alu 2 96 -215 1134 242 88 12 chr1 249336312 249336642 -32857022 + L1ME3A LINE L1 5808 6162 -8 1166 230 54 22 chr1 249336972 249337338 -32856326 + L1ME LINE L1 5242 5626 -538 3341 32 12 0 chr1 249337382 249337788 -32855876 - L1PA4 LINE L1 0 6155 5745 4654 41 32 0 chr1 249337788 249338455 -32855209 + L1P2 LINE L1 4797 5475 -679 941 230 45 33 chr1 249338463 249338793 -32854871 - L1MCc LINE L1 -990 5951 5618 1232 283 92 5 chr1 249338806 249339429 -32854235 - L1MCc LINE L1 -1365 5576 4900 305 135 45 0 chr1 249339472 249339561 -32854103 + (TA)n Simple_repeat Simple_repeat 2 94 0 221 81 0 27 chr1 249339617 249339654 -32854010 + (TA)n Simple_repeat Simple_repeat 2 37 0 449 241 38 38 chr1 249339682 249339840 -32853824 - L1MCc LINE L1 -2164 4777 4620 269 261 15 0 chr1 249339850 249339915 -32853749 + CT-rich Low_complexity Low_complexity 1 66 0 1919 277 84 35 chr1 249339953 249342223 -32851441 - L1MCc LINE L1 -2976 3965 1472 300 266 73 9 chr1 249342797 249342906 -32850758 - L1MCc LINE L1 -6289 134 19 261 0 0 0 chr1 249343489 249343518 -32850146 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 676 188 0 58 chr1 249343523 249343661 -32850003 + FLAM_A SINE Alu 1 130 -3 1913 128 7 24 chr1 249344255 249344571 -32849093 + AluSx SINE Alu 1 311 0 3657 118 15 0 chr1 249345777 249346326 -32847338 - L1PA14 LINE L1 -9 6152 5596 192 97 0 0 chr1 249346449 249346480 -32847184 + (A)n Simple_repeat Simple_repeat 1 31 0 279 235 33 85 chr1 249346804 249346957 -32846707 - L1MC/D LINE L1 -894 5465 5321 28 79 0 0 chr1 249347169 249347232 -32846432 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr1 249347506 249347538 -32846126 + AT_rich Low_complexity Low_complexity 1 32 0 386 303 0 0 chr1 249348199 249348361 -32845303 + (TA)n Simple_repeat Simple_repeat 2 163 0 1557 174 7 48 chr1 249348424 249348755 -32844909 - AluJo SINE Alu 0 320 2 21 57 0 0 chr1 249349348 249349383 -32844281 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 249349403 249349425 -32844239 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr1 249349574 249349616 -32844048 + AT_rich Low_complexity Low_complexity 1 42 0 285 367 56 9 chr1 249350641 249350856 -32842808 - L3b LINE CR1 -136 1447 1223 219 152 0 0 chr1 249351070 249351116 -32842548 + (CA)n Simple_repeat Simple_repeat 1 46 0 244 255 0 43 chr1 249351117 249351211 -32842453 + L1MC4 LINE L1 6614 6703 -1339 591 288 114 17 chr1 249351314 249351550 -32842114 + MIR SINE MIR 4 262 0 200 304 152 0 chr1 249351852 249351964 -32841700 - L2 LINE L2 -8 3305 3177 246 132 15 59 chr1 249352729 249352797 -32840867 + (TATAA)n Simple_repeat Simple_repeat 3 67 0 26 0 0 0 chr1 249352924 249352950 -32840714 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr1 249353531 249353563 -32840101 + (A)n Simple_repeat Simple_repeat 1 32 0 2068 101 3 41 chr1 249353564 249353682 -32839982 + AluSx SINE Alu 1 122 -190 210 37 0 0 chr1 249353682 249353709 -32839955 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1718 104 14 7 chr1 249353711 249353990 -32839674 - AluSq SINE Alu -32 281 1 2068 101 3 41 chr1 249353990 249354184 -32839480 + AluSx SINE Alu 123 304 -8 248 178 0 0 chr1 249356391 249356436 -32837228 - MIR SINE MIR -113 149 105 318 217 14 0 chr1 249359092 249359161 -32834503 + MIR3 SINE MIR 98 167 -41 2023 140 0 3 chr1 249359531 249359831 -32833833 - AluSg SINE Alu -11 299 1 237 258 91 0 chr1 249359831 249359897 -32833767 - MIR SINE MIR -20 242 171 180 0 0 0 chr1 249359998 249360018 -32833646 + (TAA)n Simple_repeat Simple_repeat 2 21 0 182 340 178 15 chr1 249361503 249361700 -32831964 - MIR SINE MIR -14 248 20 4435 150 5 10 chr1 249361912 249362698 -32830966 - L1MA4 LINE L1 -1 6299 5518 3994 179 10 3 chr1 249362699 249363472 -32830192 + L1 LINE L1 4318 5096 -1050 2389 120 3 3 chr1 249363472 249363838 -32829826 - L1PB1 LINE L1 -1 6150 5785 512 99 50 21 chr1 249363839 249363980 -32829684 + (TA)n Simple_repeat Simple_repeat 1 145 0 3430 157 13 3 chr1 249363986 249364830 -32828834 - L1PB1 LINE L1 -360 5791 4939 337 318 164 37 chr1 249365137 249365351 -32828313 - MIR SINE MIR 0 262 22 203 290 43 0 chr1 249365911 249365980 -32827684 - MIR3 SINE MIR -19 189 118 297 0 0 0 chr1 249368443 249368476 -32825188 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 321 26 0 0 chr1 249368475 249368513 -32825151 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr1 249369730 249369762 -32823902 + AT_rich Low_complexity Low_complexity 1 32 0 2285 161 29 19 chr1 249369866 249370281 -32823383 + MLT1C LTR MaLR 5 423 -44 1802 107 0 0 chr1 249370549 249370792 -32822872 - THE1A LTR MaLR 0 355 113 2843 73 8 0 chr1 249370795 249371164 -32822500 - MLT2A1 LTR ERVL -72 372 1 285 98 0 0 chr1 249372227 249372268 -32821396 + (TG)n Simple_repeat Simple_repeat 2 42 0 219 69 0 0 chr1 249372724 249372753 -32820911 + (A)n Simple_repeat Simple_repeat 1 29 0 399 220 110 25 chr1 249373531 249373649 -32820015 + L2 LINE L2 3186 3313 0 215 340 61 27 chr1 249375394 249375541 -32818123 - MIR SINE MIR -45 217 66 189 250 45 0 chr1 249375881 249375925 -32817739 + MIR SINE MIR 96 141 -67 21 0 0 0 chr1 249376138 249376159 -32817505 + AT_rich Low_complexity Low_complexity 1 21 0 648 315 11 23 chr1 249376170 249376430 -32817234 - L3b LINE CR1 -211 1372 1116 3463 58 0 7 chr1 249378909 249379360 -32814304 + LTR7 LTR ERV1 1 448 -2 19750 89 42 13 chr1 249379362 249382273 -32811391 + HERVH LTR ERV1 1 2995 -4718 834 150 27 0 chr1 249382252 249382399 -32811265 + HERVH LTR ERV1 3140 3290 -4423 * 901 182 0 7 chr1 249382389 249382543 -32811121 + HERVH LTR ERV1 3492 3644 -4069 23345 54 3 2 chr1 249382545 249385515 -32808149 + HERVH LTR ERV1 4743 7713 0 3258 52 0 70 chr1 249385515 249385997 -32807667 + LTR7 LTR ERV1 1 448 -2 4033 163 89 7 chr1 249386029 249386792 -32806872 + LTR1B LTR ERV1 1 826 0 205 204 37 74 chr1 249387777 249387831 -32805833 - MER5A DNA MER1_type 0 189 138 446 244 15 23 chr1 249387831 249387962 -32805702 - L1ME1 LINE L1 -4 6162 6033 * 755 265 23 10 chr1 249387939 249388275 -32805389 - L1MB2 LINE L1 -151 6020 5611 2075 193 74 109 chr1 249388364 249389068 -32804596 + LTR8A LTR ERV1 34 712 -15 333 155 0 0 chr1 249389563 249389621 -32804043 + T-rich Low_complexity Low_complexity 1 58 0 345 301 123 21 chr1 249389758 249389955 -32803709 - L1ME3A LINE L1 0 6231 6019 5041 132 46 33 chr1 249389972 249390187 -32803477 + L1PA16 LINE L1 5129 5340 -826 2389 79 3 0 chr1 249390187 249390479 -32803185 - AluSc SINE Alu -16 293 1 5041 132 46 33 chr1 249390479 249391275 -32802389 + L1PA16 LINE L1 5340 6164 -2 912 251 39 0 chr1 249391278 249391537 -32802127 - L1ME3A LINE L1 -229 6002 5734 1879 164 7 0 chr1 249391555 249391841 -32801823 - AluJo SINE Alu -23 289 2 3519 271 120 40 chr1 249391887 249392846 -32800818 - L1MEc LINE L1 -1348 4867 3986 315 0 0 0 chr1 249392846 249392881 -32800783 + (CA)n Simple_repeat Simple_repeat 2 36 0 3519 271 120 40 chr1 249392881 249393796 -32799868 - L1MEc LINE L1 -2229 3986 3146 784 183 0 23 chr1 249393796 249393927 -32799737 + FLAM_C SINE Alu 2 129 -4 3519 271 120 40 chr1 249393927 249395633 -32798031 - L1MEc LINE L1 -3069 3146 1038 21 57 0 0 chr1 249396630 249396665 -32796999 + AT_rich Low_complexity Low_complexity 1 35 0 260 284 0 0 chr1 249396668 249396735 -32796929 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 320 270 16 40 chr1 249396738 249396864 -32796800 - L1MEc LINE L1 -5484 912 790 419 287 23 16 chr1 249398217 249398346 -32795318 - MIR SINE MIR -119 143 14 235 364 17 17 chr1 249398985 249399103 -32794561 - L2 LINE L2 0 3313 3196 1518 89 4 13 chr1 249399119 249399344 -32794320 - L1PB1 LINE L1 0 6151 5929 201 232 137 53 chr1 249399979 249400074 -32793590 - L2 LINE L2 -847 2467 2365 4003 153 37 17 chr1 249400493 249401190 -32792474 + MER50 LTR ERV1 1 711 -23 3424 162 11 70 chr1 249401689 249402422 -32791242 + LTR8 LTR ERV1 1 690 -1 21 82 0 0 chr1 249404443 249404492 -32789172 + AT_rich Low_complexity Low_complexity 1 49 0 209 244 139 35 chr1 249404572 249404687 -32788977 - MIR SINE MIR -3 205 78 323 259 12 0 chr1 249404827 249404912 -32788752 + L2 LINE L2 3226 3311 -2 481 271 23 81 chr1 249404916 249405137 -32788527 - MIR SINE MIR -2 260 53 355 261 91 20 chr1 249406257 249406411 -32787253 + MIR SINE MIR 43 205 -57 180 152 0 0 chr1 249407226 249407259 -32786405 + T-rich Low_complexity Low_complexity 2 34 0 22 70 0 0 chr1 249407603 249407646 -32786018 + AT_rich Low_complexity Low_complexity 1 43 0 697 193 62 0 chr1 249407814 249407975 -32785689 - MER96B DNA MER1_type? -242 175 5 553 250 61 68 chr1 249409082 249409346 -32784318 + LTR16A1 LTR ERVL 1 262 -195 229 240 20 0 chr1 249409480 249409530 -32784134 - MER66B LTR ERV1 -141 345 295 1109 157 0 0 chr1 249409535 249409707 -32783957 - FAM SINE Alu -2 173 2 5237 146 37 25 chr1 249409707 249410671 -32782993 - L1MC1 LINE L1 -8 6325 5350 1056 167 9 43 chr1 249412003 249412213 -32781451 + MER3 DNA MER1_type 1 203 -6 228 246 66 0 chr1 249413259 249413320 -32780344 + MIR SINE MIR 82 146 -62 267 343 64 47 chr1 249414448 249414620 -32779044 + MIR3 SINE MIR 33 207 -1 21 36 0 0 chr1 249418022 249418050 -32775614 + AT_rich Low_complexity Low_complexity 1 28 0 332 340 152 11 chr1 249419644 249420111 -32773553 + L2 LINE L2 1893 2425 -889 249 235 0 0 chr1 249420358 249420409 -32773255 + L2 LINE L2 3249 3299 -14 856 245 66 5 chr1 249421029 249421241 -32772423 - MIR SINE MIR -1 261 37 658 362 81 14 chr1 249421690 249422124 -32771540 + L3 LINE CR1 1113 1575 -2 231 36 0 0 chr1 249423685 249423713 -32769951 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 23 33 0 0 chr1 249425247 249425277 -32768387 + AT_rich Low_complexity Low_complexity 1 30 0 1918 161 0 31 chr1 249425718 249426035 -32767629 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr1 249426102 249426123 -32767541 + AT_rich Low_complexity Low_complexity 1 21 0 268 292 158 25 chr1 249426250 249426370 -32767294 - MIR SINE MIR -116 146 11 647 212 56 106 chr1 249426823 249427189 -32766475 + MLT1C LTR MaLR 51 389 -1 673 307 30 9 chr1 249427194 249427425 -32766239 + LTR16A LTR ERVL 201 436 -14 573 316 65 23 chr1 249427442 249427793 -32765871 + HERV16 LTR ERVL 5 370 -4626 2390 349 42 19 chr1 249427808 249429148 -32764516 + ERVL LTR ERVL 2762 4131 -1633 245 307 34 11 chr1 249429174 249429262 -32764402 + MIR SINE MIR 115 204 -58 230 321 87 37 chr1 249429299 249429620 -32764044 + L1ME LINE L1 5521 5857 -264 392 145 119 2 chr1 249433875 249433963 -32759701 + MLT1F1 LTR MaLR 471 624 0 573 185 0 0 chr1 249434259 249434378 -32759286 + CT-rich Low_complexity Low_complexity 1 119 0 2080 126 0 19 chr1 249434623 249434933 -32758731 - AluJb SINE Alu -8 304 1 569 228 12 68 chr1 249435157 249435319 -32758345 - LTR41 LTR ERVL -96 677 525 234 320 190 25 chr1 249436199 249436399 -32757265 + L2 LINE L2 3081 3313 0 1558 111 10 197 chr1 249436443 249436859 -32756805 - MER44D DNA MER2_type -1 608 1 21 0 0 0 chr1 249437017 249437038 -32756626 + AT_rich Low_complexity Low_complexity 1 21 0 1847 167 18 32 chr1 249439608 249439950 -32753714 - MER1B DNA MER1_type 0 337 1 514 254 98 87 chr1 249440066 249440455 -32753209 - L1ME LINE L1 -335 5786 5394 21 0 0 0 chr1 249441758 249441779 -32751885 + AT_rich Low_complexity Low_complexity 1 21 0 286 211 13 13 chr1 249441805 249441881 -32751783 - LTR33 LTR ERVL -20 501 426 2572 185 67 19 chr1 249441933 249442469 -32751195 - MER68 LTR ERV1 0 562 1 501 320 63 45 chr1 249442491 249442760 -32750904 - LTR33 LTR ERVL -202 319 46 295 152 0 0 chr1 249442974 249443020 -32750644 + MER21B LTR ERV1 25 70 -861 1756 198 32 175 chr1 249443128 249443517 -32750147 + MER21B LTR ERV1 70 513 -350 1971 156 39 57 chr1 249443517 249443954 -32749710 + LTR3 LTR ERVK 1 429 0 1756 198 32 175 chr1 249443954 249444059 -32749605 + MER21B LTR ERV1 513 631 -232 1874 96 8 0 chr1 249444059 249444310 -32749354 + AluSc SINE Alu 45 297 -12 1756 198 32 175 chr1 249444310 249444747 -32748917 + MER21B LTR ERV1 631 758 -105 390 175 0 0 chr1 249445989 249446069 -32747595 + (TG)n Simple_repeat Simple_repeat 2 81 0 1036 240 154 9 chr1 249446415 249446752 -32746912 - L1M4 LINE L1 -1743 4403 4018 * 2979 238 63 29 chr1 249446746 249448034 -32745630 + L1ME1 LINE L1 4841 6161 -5 835 261 25 20 chr1 249448576 249448821 -32744843 + MER119 DNA MER1_type 56 301 -282 207 358 22 45 chr1 249449022 249449156 -32744508 + L3 LINE CR1 1066 1196 -381 380 276 29 9 chr1 249450348 249450453 -32743211 - MER81 DNA DNA -3 111 5 226 382 65 0 chr1 249450559 249450682 -32742982 - L3b LINE CR1 -197 1386 1256 228 135 0 0 chr1 249452308 249452345 -32741319 + (TG)n Simple_repeat Simple_repeat 2 38 0 402 314 114 67 chr1 249453611 249454041 -32739623 - L2 LINE L2 -16 3256 2807 249 336 10 29 chr1 249454315 249454419 -32739245 + L2 LINE L2 3171 3272 0 810 322 8 50 chr1 249455110 249455467 -32738197 + L3 LINE CR1 1235 1576 -1 988 209 68 0 chr1 249455517 249455723 -32737941 - MER58A DNA MER1_type -4 220 1 2302 169 45 47 chr1 249455740 249456020 -32737644 + MLT1D LTR MaLR 17 297 -208 2395 84 3 0 chr1 249456020 249456317 -32737347 + AluSp SINE Alu 5 302 -11 2302 169 45 47 chr1 249456317 249456521 -32737143 + MLT1D LTR MaLR 297 500 -5 190 411 0 14 chr1 249456533 249456606 -32737058 - MIR3 SINE MIR -132 76 5 983 244 46 32 chr1 249456699 249456982 -32736682 + MLT1H LTR MaLR 12 298 -251 229 392 17 17 chr1 249459116 249459297 -32734367 - L2 LINE L2 -939 2375 2195 2328 135 28 6 chr1 249461707 249462063 -32731601 + THE1B LTR MaLR 1 364 0 2116 86 4 14 chr1 249462222 249462502 -32731162 + AluSg SINE Alu 14 290 -20 1915 159 3 0 chr1 249462631 249462927 -32730737 - AluJb SINE Alu -10 302 6 223 273 23 68 chr1 249463205 249463293 -32730371 - L2 LINE L2 -2899 415 332 28 61 0 0 chr1 249463809 249463858 -32729806 + AT_rich Low_complexity Low_complexity 1 49 0 219 36 0 0 chr1 249464189 249464217 -32729447 + (TC)n Simple_repeat Simple_repeat 1 28 0 201 39 0 0 chr1 249464216 249464242 -32729422 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 312 0 62 0 chr1 249464551 249464599 -32729065 + (TA)n Simple_repeat Simple_repeat 1 51 0 270 56 0 0 chr1 249464602 249464638 -32729026 + (GA)n Simple_repeat Simple_repeat 2 37 0 2018 108 3 27 chr1 249464872 249465168 -32728496 - AluSc SINE Alu -19 290 2 441 193 163 0 chr1 249465815 249465950 -32727714 - MER53 DNA DNA -10 179 23 398 401 10 10 chr1 249466118 249466325 -32727339 - MIR SINE MIR -36 226 20 558 317 216 13 chr1 249466330 249466896 -32726768 + L2 LINE L2 2642 3312 -1 180 427 21 0 chr1 249469517 249469613 -32724051 + L2 LINE L2 2943 3040 -232 221 179 0 18 chr1 249469832 249469888 -32723776 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 729 62 0 0 chr1 249470745 249470841 -32722823 + AluY SINE Alu 216 311 0 187 254 51 51 chr1 249470857 249470916 -32722748 + MIR SINE MIR 18 76 -186 388 280 24 16 chr1 249470942 249471067 -32722597 + MIR SINE MIR 136 261 -1 183 114 0 0 chr1 249472455 249472490 -32721174 + (A)n Simple_repeat Simple_repeat 1 35 0 227 282 51 0 chr1 249472717 249472795 -32720869 - L2 LINE L2 0 3313 3232 * 1075 282 96 13 chr1 249472774 249473232 -32720432 - L2 LINE L2 -381 2933 2438 223 195 0 0 chr1 249473322 249473363 -32720301 + A-rich Low_complexity Low_complexity 1 41 0 550 132 11 0 chr1 249473649 249473740 -32719924 + MLT2C2 LTR ERVL 1 92 -372 201 176 0 0 chr1 249473835 249473869 -32719795 + A-rich Low_complexity Low_complexity 1 34 0 891 257 178 31 chr1 249473976 249474455 -32719209 + HAL1 LINE L1 1623 2171 -336 544 240 142 31 chr1 249474464 249474718 -32718946 + HAL1 LINE L1 2221 2502 -5 2045 117 10 0 chr1 249474854 249475145 -32718519 - AluSq SINE Alu -19 294 1 1724 76 50 72 chr1 249475417 249475694 -32717970 + AluY SINE Alu 35 305 -6 270 327 18 35 chr1 249476411 249476524 -32717140 + L3 LINE CR1 1083 1193 -384 402 322 13 26 chr1 249476729 249476912 -32716752 + MLT1J LTR MaLR 18 161 -289 432 0 0 0 chr1 249478785 249478833 -32714831 + (GA)n Simple_repeat Simple_repeat 1 48 0 1618 129 39 0 chr1 249480962 249481242 -32712422 + L1MA9 LINE L1 6022 6312 0 21 0 0 0 chr1 249482516 249482537 -32711127 + AT_rich Low_complexity Low_complexity 1 21 0 2258 81 34 0 chr1 249484757 249485054 -32708610 - AluY SINE Alu -4 307 1 1687 113 43 94 chr1 249486451 249486780 -32706884 - AluSq SINE Alu -1 312 1 23 54 0 0 chr1 249487520 249487557 -32706107 + AT_rich Low_complexity Low_complexity 1 37 0 490 257 29 117 chr1 249487896 249488203 -32705461 + MLT1H LTR MaLR 231 510 -39 494 258 39 13 chr1 249488231 249488386 -32705278 - MLT1J LTR MaLR -347 164 6 6038 261 44 32 chr1 249488591 249489825 -32703839 - L1MEc LINE L1 -3040 3175 1957 2253 164 30 37 chr1 249489825 249490259 -32703405 + Tigger2a DNA MER2_type 1 431 -3 6038 261 44 32 chr1 249490259 249492115 -32701549 - L1MEc LINE L1 -4258 1957 69 24 0 0 0 chr1 249492961 249492985 -32700679 + AT_rich Low_complexity Low_complexity 1 24 0 739 193 135 26 chr1 249493733 249493925 -32699739 + MER20 DNA MER1_type 1 213 -6 525 340 84 69 chr1 249493948 249494649 -32699015 + HAL1 LINE L1 361 1078 -1429 711 237 0 0 chr1 249494649 249494780 -32698884 + FLAM_A SINE Alu 1 131 -2 525 340 84 69 chr1 249494780 249494908 -32698756 + HAL1 LINE L1 1078 1203 -1304 4312 260 14 20 chr1 249494979 249496121 -32697543 + L1MA5 LINE L1 1138 2272 -4517 * 9837 166 48 23 chr1 249496093 249497618 -32696046 + L1MA5 LINE L1 3766 5251 -1691 2034 132 0 0 chr1 249497618 249497907 -32695757 - AluSx SINE Alu -17 295 7 9837 166 48 23 chr1 249497907 249498951 -32694713 + L1MA5 LINE L1 5251 6425 -517 199 51 0 51 chr1 249498951 249498990 -32694674 + (TA)n Simple_repeat Simple_repeat 2 38 0 9837 166 48 23 chr1 249498990 249499522 -32694142 + L1MA5 LINE L1 6425 6942 0 729 293 68 39 chr1 249499565 249499947 -32693717 + HAL1 LINE L1 1379 1771 -736 196 169 0 62 chr1 249500004 249500069 -32693595 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 292 173 13 40 chr1 249500156 249500231 -32693433 - L2 LINE L2 -768 2546 2474 32 26 0 0 chr1 249500231 249500270 -32693394 + AT_rich Low_complexity Low_complexity 1 39 0 1543 286 112 2 chr1 249500309 249500880 -32692784 - L2 LINE L2 -1075 2239 1606 237 325 64 45 chr1 249501065 249501222 -32692442 + L2 LINE L2 3113 3272 0 245 270 191 52 chr1 249501263 249501493 -32692171 - MIR SINE MIR 0 262 1 501 203 34 17 chr1 249501657 249501775 -32691889 + MIR SINE MIR 129 248 -14 830 281 66 77 chr1 249501971 249502363 -32691301 + L2 LINE L2 2848 3235 -78 224 360 37 59 chr1 249502383 249502454 -32691210 - MIR3 SINE MIR -62 146 78 2178 122 48 23 chr1 249502454 249502807 -32690857 + THE1B LTR MaLR 3 364 0 224 360 37 59 chr1 249502807 249502871 -32690793 - MIR3 SINE MIR -130 78 14 877 205 0 12 chr1 249504025 249504186 -32689478 - FRAM SINE Alu -7 159 1 514 268 51 6 chr1 249504221 249504378 -32689286 + MER97c DNA MER1_type? 16 179 -911 183 259 222 44 chr1 249504428 249504563 -32689101 + L2 LINE L2 2720 2878 -436 2528 266 68 16 chr1 249504771 249505856 -32687808 - L1M4 LINE L1 -1925 4221 3080 23 33 0 0 chr1 249506814 249506844 -32686820 + AT_rich Low_complexity Low_complexity 1 30 0 204 315 22 22 chr1 249506879 249506971 -32686693 + L2 LINE L2 3181 3272 0 324 333 0 19 chr1 249507297 249507402 -32686262 + MER5A DNA MER1_type 87 189 0 290 380 73 5 chr1 249509351 249509556 -32684108 + MIR SINE MIR 22 240 -22 2406 105 19 14 chr1 249509890 249510252 -32683412 - THE1B LTR MaLR 0 364 1 220 150 50 0 chr1 249510327 249510367 -32683297 + (CCTA)n Simple_repeat Simple_repeat 1 42 0 410 296 75 49 chr1 249510914 249511333 -32682331 + MLT1I LTR MaLR 5 403 -6 455 267 155 12 chr1 249512813 249512974 -32680690 + MER5A DNA MER1_type 4 187 -2 4459 220 67 37 chr1 249514844 249516396 -32677268 - L1MB8 LINE L1 -329 5849 4239 2155 105 0 13 chr1 249516396 249516701 -32676963 - AluY SINE Alu -10 301 1 4459 220 67 37 chr1 249516701 249516905 -32676759 - L1MB8 LINE L1 -1939 4239 4043 249 159 0 0 chr1 249517403 249517447 -32676217 + (TA)n Simple_repeat Simple_repeat 1 44 0 24 32 0 0 chr1 249517448 249517479 -32676185 + AT_rich Low_complexity Low_complexity 1 31 0 2258 123 25 8 chr1 249517517 249517884 -32675780 + THE1C LTR MaLR 3 375 0 9384 114 43 36 chr1 249517885 249519450 -32674214 + THE1C-int LTR MaLR 2 1577 -3 1925 145 13 74 chr1 249519451 249519758 -32673906 + THE1B LTR MaLR 8 290 -74 1667 130 50 40 chr1 249519758 249520035 -32673629 + AluSg SINE Alu 1 308 0 253 0 0 0 chr1 249520035 249520063 -32673601 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1925 145 13 74 chr1 249520063 249520134 -32673530 + THE1B LTR MaLR 290 364 0 1574 217 41 27 chr1 249520177 249520661 -32673003 + L1M4 LINE L1 3554 4044 -2102 505 277 9 0 chr1 249520729 249520841 -32672823 - MER63A DNA MER1_type 0 210 98 207 352 11 22 chr1 249521233 249521324 -32672340 - L2 LINE L2 -3 3310 3221 21 36 0 0 chr1 249523620 249523648 -32670016 + AT_rich Low_complexity Low_complexity 1 28 0 265 175 0 35 chr1 249523659 249523716 -32669948 + L2 LINE L2 2213 2267 -1047 * 433 236 14 100 chr1 249523715 249523855 -32669809 - L2 LINE L2 -1 3312 3185 698 330 92 28 chr1 249523988 249524680 -32668984 + L2 LINE L2 2268 3008 -264 249 312 65 0 chr1 249524729 249524806 -32668858 + L2 LINE L2 3136 3217 -55 203 0 0 36 chr1 249525229 249525257 -32668407 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4500 191 57 42 chr1 249525850 249525923 -32667741 - Tigger6a DNA MER2_type -531 1066 996 900 139 0 0 chr1 249525923 249526067 -32667597 - L1MA2 LINE L1 0 6304 6161 4500 191 57 42 chr1 249526067 249526333 -32667331 - Tigger6a DNA MER2_type -601 996 736 2353 76 0 0 chr1 249526333 249526635 -32667029 - AluY SINE Alu -9 302 1 4500 191 57 42 chr1 249526635 249527344 -32666320 - Tigger6a DNA MER2_type -861 736 1 24 67 0 0 chr1 249527425 249527470 -32666194 + AT_rich Low_complexity Low_complexity 1 45 0 303 320 49 25 chr1 249527910 249528032 -32665632 - L1MC/D LINE L1 -2173 5635 5511 304 319 44 39 chr1 249528299 249528481 -32665183 - L1MC/D LINE L1 -1980 4166 3984 22 56 0 0 chr1 249528517 249528553 -32665111 + AT_rich Low_complexity Low_complexity 1 36 0 394 325 114 5 chr1 249530381 249530592 -32663072 + MIR SINE MIR 30 262 0 249 278 40 99 chr1 249530680 249530831 -32662833 + MIR SINE MIR 103 244 -18 302 278 147 56 chr1 249532007 249532155 -32661509 + L1ME LINE L1 5482 5615 -506 2438 58 0 7 chr1 249532155 249532450 -32661214 - AluY SINE Alu -15 296 4 302 278 147 56 chr1 249532450 249532567 -32661097 + L1ME LINE L1 5615 5771 -350 1819 128 7 27 chr1 249534053 249534351 -32659313 - AluSx SINE Alu -10 302 11 192 255 0 39 chr1 249534701 249534752 -32658912 + L2 LINE L2 3251 3299 -14 255 250 18 0 chr1 249537137 249537193 -32656471 + L2 LINE L2 3215 3271 -1 29 28 0 0 chr1 249537383 249537419 -32656245 + AT_rich Low_complexity Low_complexity 1 36 0 255 259 37 0 chr1 249537514 249537568 -32656096 - Tigger7 DNA MER2_type -1 2486 2431 1297 128 23 0 chr1 249537650 249537868 -32655796 - Tigger7 DNA MER2_type -1854 633 411 10024 139 44 9 chr1 249537871 249541413 -32652251 - L1PBa LINE L1 -3040 3822 11 242 297 69 21 chr1 249541435 249541580 -32652084 - L1ME3A LINE L1 -224 6226 6075 332 324 91 36 chr1 249541581 249541856 -32651808 - L1ME3A LINE L1 -569 5873 5584 328 284 144 19 chr1 249541957 249542172 -32651492 - L1ME3A LINE L1 -3588 2838 2597 390 291 66 11 chr1 249542518 249542700 -32650964 - MER96B DNA MER1_type? -223 194 3 598 250 8 52 chr1 249542878 249543146 -32650518 - L1MCa LINE L1 -2017 4409 4154 1394 186 10 14 chr1 249543368 249543663 -32650001 - L1MCa LINE L1 -2227 4199 3906 1344 171 66 31 chr1 249543657 249543979 -32649685 - L1MCa LINE L1 -3926 2500 2167 * 2434 188 22 29 chr1 249543972 249545234 -32648430 - L1M4 LINE L1 -4071 1257 3 1507 201 102 32 chr1 249545348 249545942 -32647722 - L1MCa LINE L1 -4368 2239 1623 * 3583 188 20 20 chr1 249545940 249546414 -32647250 - L1MCa LINE L1 -5095 1331 858 237 33 0 0 chr1 249546414 249546444 -32647220 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 3583 188 20 20 chr1 249546444 249546574 -32647090 - L1MCa LINE L1 -5568 858 729 1904 168 14 38 chr1 249546574 249546919 -32646745 - MER1B DNA MER1_type 0 337 1 3583 188 20 20 chr1 249546919 249547069 -32646595 - L1MCa LINE L1 -5696 730 576 328 204 98 98 chr1 249547405 249547537 -32646127 - HAL1 LINE L1 -940 1567 1436 359 324 108 23 chr1 249547646 249547822 -32645842 - L1MEd LINE L1 -4866 1253 1063 30 0 0 0 chr1 249548029 249548059 -32645605 + AT_rich Low_complexity Low_complexity 1 30 0 803 286 15 23 chr1 249548937 249549203 -32644461 + L1ME1 LINE L1 5891 6154 -12 568 168 42 0 chr1 249549226 249549345 -32644319 + L1MD1 LINE L1 6119 6242 0 1067 80 7 0 chr1 249550240 249550391 -32643273 - L1P4 LINE L1 -680 5494 5343 458 86 0 0 chr1 249550395 249550465 -32643199 + L1P LINE L1 5300 5369 -799 1041 129 24 0 chr1 249550496 249550666 -32642998 - L1P4 LINE L1 -813 5333 5160 * 2110 113 14 4 chr1 249550657 249551155 -32642509 + L1PA11 LINE L1 5493 6163 -11 1963 126 3 19 chr1 249551156 249551465 -32642199 + AluSx SINE Alu 1 304 -8 1035 140 51 15 chr1 249553660 249554022 -32639642 + MSTB LTR MaLR 3 426 0 375 290 140 19 chr1 249554103 249554410 -32639254 - L1MC/D LINE L1 -2210 5598 5255 22 35 0 0 chr1 249554626 249554655 -32639009 + AT_rich Low_complexity Low_complexity 1 29 0 225 289 22 11 chr1 249554678 249554768 -32638896 - L1MC/D LINE L1 -1161 4985 4895 1798 175 6 13 chr1 249555911 249556225 -32637439 + AluJb SINE Alu 1 312 0 307 106 30 0 chr1 249556827 249556893 -32636771 + (TA)n Simple_repeat Simple_repeat 1 68 0 1215 248 84 30 chr1 249558429 249558869 -32634795 + MLT1C LTR MaLR 1 464 -3 25 90 0 0 chr1 249562045 249562112 -32631552 + AT_rich Low_complexity Low_complexity 1 67 0 244 222 0 42 chr1 249562389 249562461 -32631203 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 260 220 0 0 chr1 249563391 249563441 -32630223 + MLT1C LTR MaLR 416 465 -2 1128 265 83 56 chr1 249563738 249564468 -32629196 - L2 LINE L2 0 3313 2561 197 361 14 0 chr1 249564554 249564626 -32629038 + MIR3 SINE MIR 121 193 -15 407 299 85 18 chr1 249565104 249565435 -32628229 + L1M4 LINE L1 4143 4495 -1651 * 6992 242 50 25 chr1 249565433 249566751 -32626913 + L1M4 LINE L1 8 1292 -5352 799 138 15 8 chr1 249566751 249566881 -32626783 + FLAM_C SINE Alu 2 132 -1 6992 242 50 25 chr1 249566881 249570205 -32623459 + L1M4 LINE L1 1292 4867 -1777 667 254 60 32 chr1 249570203 249570486 -32623178 + L1M4 LINE L1 5337 5627 -1017 * 782 266 25 0 chr1 249570770 249570969 -32622695 - MIR SINE MIR 0 262 59 903 294 119 50 chr1 249571142 249572050 -32621614 + L1M4 LINE L1 4020 4990 -1156 320 292 73 26 chr1 249572369 249572561 -32621103 + L1P4 LINE L1 5395 5595 -571 378 200 0 0 chr1 249572946 249573021 -32620643 + MER116 DNA Mariner 6 80 0 16669 117 18 0 chr1 249573177 249573649 -32620015 + L1PA8 LINE L1 2737 3199 -2973 207 0 0 0 chr1 249573649 249573672 -32619992 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 16669 117 18 0 chr1 249573672 249576591 -32617073 + L1PA8 LINE L1 3199 6163 -9 1094 208 144 19 chr1 249576865 249577129 -32616535 + AluJo SINE Alu 2 298 -4 691 102 60 1 chr1 249577531 249577652 -32616012 + MER41A LTR ERV1 398 528 -29 269 79 0 0 chr1 249578104 249578142 -32615522 + MER41A LTR ERV1 517 554 0 4971 127 38 17 chr1 249578142 249579867 -32613797 + MER41A-int LTR ERV1 1 2017 -3929 * 6174 115 62 4 chr1 249579858 249580837 -32612827 + MER41A-int LTR ERV1 2162 2439 -2576 * 13160 128 13 8 chr1 249580828 249582924 -32610740 + MER41B-int LTR ERV1 3838 5943 -3 3330 112 77 0 chr1 249582925 249583434 -32610230 + MER41B LTR ERV1 1 548 -87 2214 154 97 0 chr1 249583473 249583863 -32609801 - MSTA LTR MaLR 0 428 1 4385 174 19 8 chr1 249583863 249584638 -32609026 - MSTA-int LTR MaLR 0 1651 868 4091 298 125 28 chr1 249584643 249586844 -32606820 - L2 LINE L2 0 3313 901 360 319 22 32 chr1 249587315 249587500 -32606164 + L1MC1 LINE L1 17 199 -6224 1259 284 41 49 chr1 249587860 249588613 -32605051 + L1MC1 LINE L1 1263 2218 -4904 1991 110 18 11 chr1 249588613 249588974 -32604690 + AluSx SINE Alu 1 363 0 1259 284 41 49 chr1 249588974 249589273 -32604391 + L1MC1 LINE L1 2218 2518 -4604 376 313 116 43 chr1 249589503 249589740 -32603924 - MIR SINE MIR -1 261 9 25 31 0 0 chr1 249589960 249589992 -32603672 + AT_rich Low_complexity Low_complexity 1 32 0 687 256 92 64 chr1 249590013 249590481 -32603183 - L1ME4a LINE L1 -70 6051 5571 216 271 56 65 chr1 249592788 249592895 -32600769 - MIR SINE MIR -53 209 104 * 295 311 79 28 chr1 249592893 249593070 -32600594 - MIR SINE MIR 0 262 77 1808 265 120 32 chr1 249593342 249593472 -32600192 + L1MC1 LINE L1 5066 5183 -1774 5006 132 47 11 chr1 249593472 249594304 -32599360 + L1MC1 LINE L1 6261 7122 -6 1808 265 120 32 chr1 249594304 249595420 -32598244 + L1MC1 LINE L1 5183 6415 -542 747 294 48 23 chr1 249595412 249595722 -32597942 + L1ME3 LINE L1 5842 6159 -3 * 362 294 48 109 chr1 249595891 249596221 -32597443 + L1ME4a LINE L1 5359 5668 -453 2244 90 13 0 chr1 249596246 249596545 -32597119 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr1 249596545 249596566 -32597098 + AT_rich Low_complexity Low_complexity 1 21 0 555 294 25 76 chr1 249596825 249597063 -32596601 - MIR SINE MIR -5 257 32 378 310 72 76 chr1 249597187 249597645 -32596019 + L1ME4a LINE L1 5664 6119 -2 1337 198 80 60 chr1 249597993 249598447 -32595217 + MLT1C LTR MaLR 1 467 0 959 235 11 0 chr1 249599313 249599496 -32594168 - MER58A DNA MER1_type -39 185 1 892 212 0 0 chr1 249599881 249600051 -32593613 + L1MC1 LINE L1 6137 6306 -27 330 329 26 26 chr1 249603181 249603215 -32590449 - MIR SINE MIR 0 262 229 1976 109 7 40 chr1 249603215 249603518 -32590146 + AluSg SINE Alu 1 293 -17 330 329 26 26 chr1 249603518 249603635 -32590029 - MIR SINE MIR -32 230 111 2106 126 3 7 chr1 249603653 249603963 -32589701 + AluSx SINE Alu 1 309 -3 2025 113 9 38 chr1 249603964 249604282 -32589382 + AluSg1 SINE Alu 1 309 0 1531 295 139 36 chr1 249604661 249605336 -32588328 - L3 LINE CR1 -157 1420 676 21 0 0 0 chr1 249605528 249605549 -32588115 + AT_rich Low_complexity Low_complexity 1 21 0 297 343 0 15 chr1 249606915 249607049 -32586615 + L2 LINE L2 1728 1859 -1455 1781 224 103 63 chr1 249607073 249607381 -32586283 - L1MC4 LINE L1 -16 8026 7732 3728 54 0 0 chr1 249607381 249607845 -32585819 + L1PA4 LINE L1 5689 6152 -3 1781 224 103 63 chr1 249607845 249608212 -32585452 - L1MC4 LINE L1 -310 7732 7238 1515 246 17 2 chr1 249608226 249608614 -32585050 - L1MC4 LINE L1 -818 7075 6606 271 200 55 0 chr1 249608698 249608753 -32584911 - Tigger2 DNA MER2_type -3 2715 2658 * 6424 135 20 12 chr1 249608745 249609801 -32583863 - Tigger1 DNA MER2_type -1300 1118 55 189 0 0 0 chr1 249609803 249609824 -32583840 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 30 27 0 0 chr1 249610531 249610568 -32583096 + AT_rich Low_complexity Low_complexity 1 37 0 961 92 29 12 chr1 249611259 249611301 -32582363 + GA-rich Low_complexity Low_complexity 1 218 0 961 92 29 12 chr1 249611301 249611474 -32582190 + GA-rich Low_complexity Low_complexity 3 178 0 301 271 107 33 chr1 249612333 249612455 -32581209 - HAL1 LINE L1 -1163 1344 1214 1090 234 0 14 chr1 249615320 249615542 -32578122 + MER8 DNA MER2_type 21 239 0 231 389 111 39 chr1 249615606 249616038 -32577626 - L2 LINE L2 -2 3270 2808 521 303 103 45 chr1 249616513 249616959 -32576705 + HAL1b LINE L1 245 716 -632 1458 179 9 80 chr1 249617212 249617537 -32576127 - AluJb SINE Alu -10 302 1 23 78 0 0 chr1 249617560 249617611 -32576053 + AT_rich Low_complexity Low_complexity 1 51 0 397 134 0 0 chr1 249617672 249617739 -32575925 + L1PA8 LINE L1 6101 6167 -5 22 56 0 0 chr1 249617739 249617775 -32575889 + AT_rich Low_complexity Low_complexity 1 36 0 408 332 69 9 chr1 249617918 249618150 -32575514 + L1ME LINE L1 5411 5656 -465 195 439 32 0 chr1 249618152 249618275 -32575389 - L2 LINE L2 -2059 1255 1129 2129 57 43 14 chr1 249619967 249620292 -32573372 + AluY SINE Alu 1 311 0 225 0 0 0 chr1 249620293 249620318 -32573346 + (TA)n Simple_repeat Simple_repeat 1 25 0 2184 90 0 27 chr1 249620318 249620619 -32573045 + AluY SINE Alu 2 294 -17 2337 64 0 3 chr1 249622410 249622708 -32570956 - AluY SINE Alu -14 297 1 28 61 0 0 chr1 249622792 249622841 -32570823 + AT_rich Low_complexity Low_complexity 1 49 0 237 229 33 0 chr1 249622841 249622902 -32570762 + (TA)n Simple_repeat Simple_repeat 1 63 0 559 273 40 11 chr1 249622902 249623244 -32570420 - L1ME LINE L1 -648 5518 5063 207 209 0 0 chr1 249623391 249623434 -32570230 + L2 LINE L2 3271 3313 0 335 282 72 44 chr1 249623691 249623872 -32569792 - MLT1I LTR MaLR -198 211 26 23 92 0 0 chr1 249623924 249623989 -32569675 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr1 249624345 249624366 -32569298 + AT_rich Low_complexity Low_complexity 1 21 0 196 352 144 8 chr1 249624921 249625185 -32568479 + L2 LINE L2 1746 2045 -1269 206 340 113 19 chr1 249626938 249627044 -32566620 + L2 LINE L2 3149 3264 -8 639 295 72 13 chr1 249628153 249628390 -32565274 - MIR SINE MIR 0 262 12 379 364 63 5 chr1 249628912 249629118 -32564546 - L2 LINE L2 -359 2955 2738 195 208 42 21 chr1 249630150 249630198 -32563466 - MIR SINE MIR -6 256 208 270 179 0 0 chr1 249630226 249630282 -32563382 + (CA)n Simple_repeat Simple_repeat 2 57 0 821 266 21 0 chr1 249630282 249630474 -32563190 - MIR SINE MIR -65 197 2 211 295 20 51 chr1 249631228 249631345 -32562319 - MIR SINE MIR -70 192 50 2244 100 0 0 chr1 249631965 249632255 -32561409 + AluSg1 SINE Alu 3 292 -17 401 316 0 8 chr1 249632911 249633028 -32560636 + L2 LINE L2 3180 3295 -18 774 164 0 50 chr1 249633176 249633316 -32560348 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr1 249635098 249635128 -32558536 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 249686277 249686304 -32507360 + (TTA)n Simple_repeat Simple_repeat 1 27 0 23 33 0 0 chr1 249686965 249686995 -32506669 + AT_rich Low_complexity Low_complexity 1 30 0 331 52 35 35 chr1 249689222 249689280 -32504384 + (GGAAA)n Simple_repeat Simple_repeat 5 62 0 413 306 22 22 chr1 249689333 249689513 -32504151 + GA-rich Low_complexity Low_complexity 1 180 0 25 31 0 0 chr1 249690024 249690056 -32503608 + AT_rich Low_complexity Low_complexity 1 32 0 371 294 51 51 chr1 249692135 249692332 -32501332 - L3 LINE CR1 -184 1393 1197 372 309 92 20 chr1 249692884 249693036 -32500628 + MER5B DNA MER1_type 15 177 -1 2255 56 38 0 chr1 249693380 249693668 -32499996 + AluY SINE Alu 1 299 -12 319 296 23 15 chr1 249693719 249693851 -32499813 - MARNA DNA Mariner -169 417 285 234 0 0 0 chr1 249694211 249694237 -32499427 + (CAA)n Simple_repeat Simple_repeat 2 27 0 417 54 0 0 chr1 249694324 249694380 -32499284 + (CA)n Simple_repeat Simple_repeat 1 56 0 1695 231 76 71 chr1 249694491 249695252 -32498412 + L1MC5 LINE L1 6757 7521 -440 24 32 0 0 chr1 249695315 249695346 -32498318 + AT_rich Low_complexity Low_complexity 1 31 0 226 212 10 81 chr1 249695373 249695472 -32498192 + L1ME3A LINE L1 5970 6061 -109 1776 204 92 9 chr1 249695488 249695953 -32497711 + MLT1D LTR MaLR 2 505 0 210 450 0 0 chr1 249696201 249696312 -32497352 + L3 LINE CR1 1465 1575 -2 185 300 50 50 chr1 249697644 249697744 -32495920 + MIR SINE MIR 120 219 -43 257 0 30 0 chr1 249697873 249697906 -32495758 + (CA)n Simple_repeat Simple_repeat 2 35 0 296 222 0 0 chr1 249697992 249698046 -32495618 - MIR3 SINE MIR -31 177 124 241 235 24 0 chr1 249698133 249698218 -32495446 + (TA)n Simple_repeat Simple_repeat 1 87 0 349 169 65 13 chr1 249698228 249698305 -32495359 + MER106A DNA MER1_type 139 219 -17 323 218 103 11 chr1 249698889 249698976 -32494688 - MIR3 SINE MIR -1 207 113 384 22 0 0 chr1 249699536 249699581 -32494083 + (CA)n Simple_repeat Simple_repeat 2 46 0 219 139 0 0 chr1 249702722 249702758 -32490906 + (GAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr1 249703027 249703056 -32490608 + AT_rich Low_complexity Low_complexity 1 29 0 302 273 91 16 chr1 249703077 249703198 -32490466 + MIR SINE MIR 35 164 -98 231 114 0 0 chr1 249705045 249705080 -32488584 + (TG)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr1 249705163 249705192 -32488472 + (T)n Simple_repeat Simple_repeat 1 29 0 210 37 0 0 chr1 249706398 249706425 -32487239 + (T)n Simple_repeat Simple_repeat 1 27 0 341 75 19 0 chr1 249707123 249707176 -32486488 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr1 249708093 249708113 -32485551 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1663 211 56 18 chr1 249709103 249709553 -32484111 + MLT1C LTR MaLR 1 467 0 181 356 14 0 chr1 249709568 249709641 -32484023 + MIR3 SINE MIR 127 200 -8 477 314 26 26 chr1 249709700 249709891 -32483773 + MIR3 SINE MIR 18 208 0 227 273 77 88 chr1 249709910 249710104 -32483560 - L2 LINE L2 -10 3303 3112 534 207 60 0 chr1 249710841 249710957 -32482707 + L2 LINE L2 3191 3313 0 21 0 0 0 chr1 249712647 249712668 -32480996 + AT_rich Low_complexity Low_complexity 1 21 0 2161 122 7 0 chr1 249712737 249713040 -32480624 + AluSx SINE Alu 2 306 -6 279 0 0 0 chr1 249713211 249713242 -32480422 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr1 249715914 249715935 -32477729 + AT_rich Low_complexity Low_complexity 1 21 0 491 262 67 13 chr1 249718056 249718205 -32475459 + MIR3 SINE MIR 11 167 -41 195 129 0 0 chr1 249718704 249718735 -32474929 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 198 351 11 32 chr1 249719364 249719458 -32474206 + L2 LINE L2 2562 2653 -661 646 296 75 44 chr1 249719679 249719968 -32473696 - L2 LINE L2 -50 3263 2984 1830 188 11 19 chr1 249719968 249720336 -32473328 + MLT1A1 LTR MaLR 1 365 0 646 296 75 44 chr1 249720336 249720597 -32473067 - L2 LINE L2 -329 2984 2697 333 358 115 0 chr1 249720635 249720800 -32472864 - MIR SINE MIR -78 184 1 22 0 0 0 chr1 249721144 249721166 -32472498 + AT_rich Low_complexity Low_complexity 1 22 0 396 248 28 35 chr1 249722344 249722489 -32471175 + L2 LINE L2 2816 2959 -354 525 220 21 43 chr1 249722491 249722632 -32471032 + L2 LINE L2 3175 3312 -1 23 0 0 0 chr1 249722844 249722867 -32470797 + AT_rich Low_complexity Low_complexity 1 23 0 438 20 0 0 chr1 249724465 249724516 -32469148 + (TG)n Simple_repeat Simple_repeat 1 51 0 354 23 0 0 chr1 249724976 249725019 -32468645 + (GA)n Simple_repeat Simple_repeat 2 44 0 278 252 104 52 chr1 249726919 249727034 -32466630 + MIR SINE MIR 78 198 -64 252 0 0 0 chr1 249727639 249727667 -32465997 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1331 172 34 68 chr1 249727970 249728266 -32465398 - AluJo SINE Alu -26 286 1 790 177 123 59 chr1 249728960 249729163 -32464501 - MER20 DNA MER1_type -3 216 1 719 162 182 0 chr1 249729354 249729502 -32464162 + MER45A DNA AcHobo 4 178 0 208 299 45 15 chr1 249729640 249729707 -32463957 + MIR SINE MIR 4 72 -190 21 0 0 0 chr1 249729711 249729732 -32463932 + AT_rich Low_complexity Low_complexity 1 21 0 1713 54 5 18 chr1 249729732 249729956 -32463708 - L1PA7 LINE L1 -25 6129 5909 494 254 116 35 chr1 249729960 249730133 -32463531 + MIR SINE MIR 65 251 -11 279 71 0 0 chr1 249730138 249730180 -32463484 + (ATG)n Simple_repeat Simple_repeat 2 43 0 234 323 46 83 chr1 249731517 249731734 -32461930 + L2 LINE L2 3016 3224 -48 195 224 0 20 chr1 249734126 249734175 -32459489 + L2 LINE L2 3266 3313 0 21 0 0 0 chr1 249734395 249734416 -32459248 + AT_rich Low_complexity Low_complexity 1 21 0 417 286 27 9 chr1 249735241 249735353 -32458311 + MIR SINE MIR 26 139 -69 344 313 30 30 chr1 249735377 249735511 -32458153 - MIR SINE MIR -10 252 119 2126 123 10 0 chr1 249737075 249737383 -32456281 + AluSq SINE Alu 1 311 -2 886 194 0 13 chr1 249737392 249737547 -32456117 + FRAM SINE Alu 1 153 -13 262 366 17 46 chr1 249739426 249739601 -32454063 + L2 LINE L2 2692 2861 -453 218 377 115 0 chr1 249739655 249739785 -32453879 + L2 LINE L2 3115 3259 -13 219 36 0 0 chr1 249740323 249740351 -32453313 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 277 231 11 66 chr1 249740416 249740507 -32453157 + MIR SINE MIR 113 198 -64 24 53 0 0 chr1 249741505 249741543 -32452121 + AT_rich Low_complexity Low_complexity 1 38 0 2133 129 0 0 chr1 249741760 249742069 -32451595 - AluSq SINE Alu 0 313 5 26 0 0 0 chr1 249744598 249744624 -32449040 + AT_rich Low_complexity Low_complexity 1 26 0 283 230 54 101 chr1 249745218 249745366 -32448298 + MIR SINE MIR 33 173 -89 1026 194 50 5 chr1 249745398 249745599 -32448065 + MER20 DNA MER1_type 10 219 0 28 48 0 0 chr1 249748660 249748702 -32444962 + AT_rich Low_complexity Low_complexity 1 42 0 2145 103 13 7 chr1 249751672 249751973 -32441691 + AluSp SINE Alu 1 303 -10 407 56 19 0 chr1 249751976 249752030 -32441634 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 910 111 11 33 chr1 249752030 249752211 -32441453 + (GGAAA)n Simple_repeat Simple_repeat 4 180 0 256 239 11 34 chr1 249752742 249752830 -32440834 + MER103 DNA DNA 74 159 -7 1751 132 0 0 chr1 249754114 249754395 -32439269 + AluSq SINE Alu 44 324 0 213 269 0 39 chr1 249754552 249754630 -32439034 + (TCCA)n Simple_repeat Simple_repeat 1 75 0 24 0 0 0 chr1 249755477 249755501 -32438163 + AT_rich Low_complexity Low_complexity 1 24 0 193 426 0 0 chr1 249756183 249756284 -32437380 + MIR SINE MIR 16 116 -92 703 250 188 5 chr1 249758419 249758627 -32435037 - MIR SINE MIR -15 247 2 204 40 0 0 chr1 249760074 249760099 -32433565 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr1 249760667 249760697 -32432967 + AT_rich Low_complexity Low_complexity 1 30 0 223 290 32 0 chr1 249763033 249763095 -32430569 + L2 LINE L2 3250 3313 0 354 325 77 48 chr1 249763405 249763614 -32430050 + L3b LINE CR1 1361 1575 -8 204 238 0 0 chr1 249764210 249764273 -32429391 + (TA)n Simple_repeat Simple_repeat 1 63 0 465 262 68 104 chr1 249764583 249764804 -32428860 - Charlie8 DNA MER1_type -2157 260 48 1538 120 5 0 chr1 249765352 249765569 -32428095 - AluSg/x SINE Alu -13 299 82 1979 110 54 39 chr1 249766606 249766941 -32426723 - THE1B LTR MaLR -24 340 1 2375 68 0 0 chr1 249767170 249767465 -32426199 - AluY SINE Alu -16 295 1 22 56 0 19 chr1 249768669 249768696 -32424968 + AT_rich Low_complexity Low_complexity 1 27 -26 2073 83 0 0 chr1 249768696 249768961 -32424703 + AluY SINE Alu 29 293 -18 22 56 0 19 chr1 249768961 249768987 -32424677 + AT_rich Low_complexity Low_complexity 27 53 0 2063 98 30 10 chr1 249769491 249769786 -32423878 - AluSx SINE Alu -11 301 1 209 337 134 39 chr1 249771872 249772162 -32421502 - L2 LINE L2 -826 2488 2150 1375 124 26 39 chr1 249772162 249772395 -32421269 - MER30 DNA MER1_type 0 230 1 209 337 134 39 chr1 249772395 249772493 -32421171 - L2 LINE L2 -1164 2150 2063 2028 118 0 0 chr1 249772558 249772837 -32420827 + AluSx SINE Alu 27 305 -7 1658 248 22 32 chr1 249773879 249774291 -32419373 + MER21B LTR ERV1 1 408 -455 434 239 28 9 chr1 249774295 249774404 -32419260 + MER21B LTR ERV1 640 750 -113 1563 209 17 4 chr1 249774451 249775115 -32418549 + L1MC4 LINE L1 6767 7595 -447 221 196 0 22 chr1 249775225 249775271 -32418393 + T-rich Low_complexity Low_complexity 5 49 0 2062 105 11 3 chr1 249775414 249775700 -32417964 - AluSx SINE Alu -13 299 12 350 319 35 0 chr1 249775764 249775880 -32417784 - MIR SINE MIR -27 235 116 1368 179 39 12 chr1 249776669 249776926 -32416738 - AluJo SINE Alu -33 279 16 329 313 125 0 chr1 249777024 249777152 -32416512 + MIR SINE MIR 49 192 -70 217 281 45 45 chr1 249777538 249777627 -32416037 + MIR SINE MIR 46 134 -128 229 184 0 0 chr1 249777668 249777706 -32415958 + L2 LINE L2 3219 3256 -16 25 65 0 0 chr1 249778386 249778432 -32415232 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr1 249779814 249779837 -32413827 + AT_rich Low_complexity Low_complexity 1 23 0 219 69 0 0 chr1 249779948 249779977 -32413687 + (TAA)n Simple_repeat Simple_repeat 2 30 0 308 276 176 91 chr1 249780064 249780394 -32413270 - L2 LINE L2 -1 3271 2914 705 258 0 0 chr1 249780426 249780589 -32413075 - MER3 DNA MER1_type -46 163 1 217 365 0 0 chr1 249780930 249781004 -32412660 - MIR SINE MIR 0 262 189 28 48 0 0 chr1 249781855 249781897 -32411767 + AT_rich Low_complexity Low_complexity 1 42 0 219 280 0 0 chr1 249782710 249782760 -32410904 + GA-rich Low_complexity Low_complexity 1 50 0 1804 162 18 21 chr1 249783077 249783410 -32410254 + L1MC1 LINE L1 5977 6308 -25 876 69 46 0 chr1 249783424 249783555 -32410109 - L1PA13 LINE L1 0 6163 6027 299 333 20 0 chr1 249784826 249784925 -32408739 - MIR3 SINE MIR -30 178 78 2003 115 19 19 chr1 249786546 249786858 -32406806 + AluSx SINE Alu 1 312 0 243 243 29 0 chr1 249786990 249787060 -32406604 - LTR50 LTR ERVL -7 788 717 305 300 69 8 chr1 249787101 249787231 -32406433 - LTR50 LTR ERVL -153 642 505 338 153 139 14 chr1 249787422 249787494 -32406170 - LTR50 LTR ERVL -714 81 1 21 0 0 0 chr1 249788767 249788788 -32404876 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 249789548 249789569 -32404095 + AT_rich Low_complexity Low_complexity 1 21 0 213 340 132 9 chr1 249792134 249792240 -32401424 + L2 LINE L2 3136 3254 -18 283 203 165 38 chr1 249793472 249793551 -32400113 + MIR SINE MIR 60 148 -114 192 200 0 0 chr1 249793577 249793622 -32400042 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 468 259 189 22 chr1 249793643 249793828 -32399836 - MIR SINE MIR -16 246 31 2084 74 18 28 chr1 249793851 249794136 -32399528 + AluSq SINE Alu 28 309 -4 353 378 16 5 chr1 249794998 249795186 -32398478 - L2 LINE L2 -676 2638 2449 248 75 0 25 chr1 249795232 249795272 -32398392 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 1448 116 14 0 chr1 249798667 249798882 -32394782 - AluSp SINE Alu -95 218 1 24 0 0 0 chr1 249802164 249802188 -32391476 + AT_rich Low_complexity Low_complexity 1 24 0 904 279 12 12 chr1 249802997 249803241 -32390423 + MIR SINE MIR 3 246 -16 213 39 0 0 chr1 249805506 249805532 -32388132 + (CA)n Simple_repeat Simple_repeat 2 27 0 2033 38 4 0 chr1 249805974 249806212 -32387452 - AluY SINE Alu -7 304 66 261 358 13 7 chr1 249807553 249807704 -32385960 + L2 LINE L2 2214 2365 -949 815 282 35 31 chr1 249808474 249808733 -32384931 + MIR SINE MIR 2 261 -1 265 200 29 29 chr1 249808756 249808826 -32384838 + (TCTCTG)n Simple_repeat Simple_repeat 6 75 0 502 333 130 33 chr1 249808832 249809745 -32383919 + L2 LINE L2 1710 2711 -603 203 200 0 0 chr1 249811133 249811168 -32382496 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 807 214 0 0 chr1 249811171 249811316 -32382348 - FRAM SINE Alu -31 145 1 298 316 22 93 chr1 249811543 249811945 -32381719 + L2 LINE L2 2639 3030 -242 200 288 50 25 chr1 249812034 249812114 -32381550 + L2 LINE L2 3232 3313 0 279 0 0 0 chr1 249813335 249813366 -32380298 + (CA)n Simple_repeat Simple_repeat 2 32 0 182 195 16 55 chr1 249814527 249814655 -32379009 + (CATATA)n Simple_repeat Simple_repeat 4 126 0 21 0 0 0 chr1 249815604 249815625 -32378039 + AT_rich Low_complexity Low_complexity 1 21 0 234 133 17 33 chr1 249817854 249817914 -32375750 + CT-rich Low_complexity Low_complexity 1 59 0 732 254 102 13 chr1 249818845 249819081 -32374583 - MIR SINE MIR 0 262 6 363 336 10 0 chr1 249820457 249820561 -32373103 + MIR SINE MIR 2 106 -156 277 340 75 0 chr1 249820916 249821022 -32372642 - L2 LINE L2 -20 3293 3180 647 307 55 0 chr1 249821052 249821254 -32372410 - MIR SINE MIR 0 262 50 622 181 8 38 chr1 249821265 249821398 -32372266 - MER3 DNA MER1_type 0 209 81 184 225 25 0 chr1 249821405 249821445 -32372219 - MIR SINE MIR -219 43 3 207 323 232 10 chr1 249821560 249821659 -32372005 + L2 LINE L2 3152 3272 0 330 67 0 0 chr1 249823372 249823417 -32370247 + (GA)n Simple_repeat Simple_repeat 1 45 0 23 33 0 0 chr1 249824183 249824213 -32369451 + AT_rich Low_complexity Low_complexity 1 30 0 251 286 0 48 chr1 249824761 249824824 -32368840 - L3 LINE CR1 -121 1456 1397 280 353 92 0 chr1 249825007 249825225 -32368439 + MIR SINE MIR 23 260 -2 313 271 31 0 chr1 249826921 249827017 -32366647 + MIR SINE MIR 47 145 -63 1892 156 0 25 chr1 249827304 249827624 -32366040 - AluJb SINE Alu 0 312 1 252 0 0 0 chr1 249828220 249828248 -32365416 + (CAT)n Simple_repeat Simple_repeat 3 30 0 265 270 78 43 chr1 249828314 249828429 -32365235 - MIR3 SINE MIR -5 203 85 1703 195 3 0 chr1 249828479 249828781 -32364883 + AluJb SINE Alu 3 305 -7 237 271 0 0 chr1 249828883 249828931 -32364733 + polypyrimidine Low_complexity Low_complexity 3 50 0 389 352 42 56 chr1 249829252 249829465 -32364199 - MIR SINE MIR -34 228 19 280 309 18 61 chr1 249829488 249829653 -32364011 - MIR SINE MIR -16 246 89 376 253 0 0 chr1 249832075 249832154 -32361510 + L2 LINE L2 3219 3297 -16 246 231 0 0 chr1 249832376 249832441 -32361223 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 267 326 116 0 chr1 249833237 249833323 -32360341 + MIR SINE MIR 13 108 -154 210 237 0 0 chr1 249834559 249834618 -32359046 + (ATG)n Simple_repeat Simple_repeat 1 59 0 1830 154 0 51 chr1 249836718 249837029 -32356635 + AluSx SINE Alu 1 295 -17 2127 116 7 13 chr1 249837231 249837534 -32356130 + AluSq SINE Alu 1 301 -12 428 286 165 16 chr1 249840271 249840526 -32353138 + MARNA DNA Mariner 154 446 -140 449 153 10 0 chr1 249841405 249841426 -32352238 + GA-rich Low_complexity Low_complexity 3 22 -79 2002 130 3 37 chr1 249841426 249841749 -32351915 + AluSx SINE Alu 1 312 0 449 153 10 0 chr1 249841749 249841825 -32351839 + GA-rich Low_complexity Low_complexity 22 101 0 400 274 96 22 chr1 249841840 249841975 -32351689 + MIR SINE MIR 47 191 -71 635 289 11 11 chr1 249843242 249843422 -32350242 - MIR SINE MIR -81 181 2 454 333 68 20 chr1 249844771 249845020 -32348644 + MIR SINE MIR 2 262 0 878 178 99 10 chr1 249845620 249845822 -32347842 - MER58A DNA MER1_type -4 220 1 189 0 0 0 chr1 249846550 249846571 -32347093 + (CAA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 249846674 249846696 -32346968 + AT_rich Low_complexity Low_complexity 1 22 0 532 215 172 52 chr1 249847089 249847322 -32346342 + MIR SINE MIR 2 262 0 28 48 0 0 chr1 249847322 249847364 -32346300 + AT_rich Low_complexity Low_complexity 1 42 0 3278 178 25 44 chr1 249847543 249847920 -32345744 + L1MB2 LINE L1 5445 5803 -368 1758 129 85 19 chr1 249847920 249848237 -32345427 + MER44D DNA MER2_type 2 609 0 3278 178 25 44 chr1 249848237 249848590 -32345074 + L1MB2 LINE L1 5803 6161 -10 2278 111 0 0 chr1 249850289 249850595 -32343069 + AluSx SINE Alu 1 306 -6 2115 109 11 3 chr1 249850702 249851010 -32342654 + AluSx SINE Alu 1 310 0 210 37 0 0 chr1 249851593 249851620 -32342044 + (CA)n Simple_repeat Simple_repeat 2 28 0 504 260 71 7 chr1 249851898 249852052 -32341612 + MER58C DNA MER1_type 11 174 -41 2185 133 0 0 chr1 249852489 249852790 -32340874 + AluSx SINE Alu 1 301 -11 1280 284 65 56 chr1 249853417 249853973 -32339691 + MER115 DNA AcHobo 132 692 -1 22 35 0 0 chr1 249854713 249854742 -32338922 + AT_rich Low_complexity Low_complexity 1 29 0 378 107 0 0 chr1 249854904 249854960 -32338704 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 1734 145 11 7 chr1 249855481 249855757 -32337907 + AluJo SINE Alu 11 287 -25 214 209 70 0 chr1 249856805 249856848 -32336816 + L2 LINE L2 3224 3269 -3 1727 162 27 14 chr1 249857501 249857798 -32335866 - AluJo SINE Alu -11 301 1 2104 131 3 0 chr1 249858092 249858390 -32335274 + AluSq SINE Alu 1 299 -14 775 247 16 0 chr1 249858627 249858813 -32334851 - MER5A DNA MER1_type 0 189 1 669 211 17 28 chr1 249858838 249859018 -32334646 + MER5B DNA MER1_type 1 178 0 1065 179 5 41 chr1 249859510 249859706 -32333958 + MER5A DNA MER1_type 1 189 0 461 114 0 14 chr1 249862072 249862142 -32331522 + MER116 DNA Mariner 5 73 -7 189 121 0 0 chr1 249864372 249864405 -32329259 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 23 0 0 0 chr1 249866847 249866870 -32326794 + AT_rich Low_complexity Low_complexity 1 23 0 202 167 0 42 chr1 249868498 249868546 -32325118 + (CATA)n Simple_repeat Simple_repeat 4 49 0 25 0 0 0 chr1 249869184 249869209 -32324455 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 249874211 249874232 -32319432 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1 249875935 249875959 -32317705 + AT_rich Low_complexity Low_complexity 1 24 0 198 103 0 0 chr1 249876722 249876751 -32316913 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 324 252 47 0 chr1 249877569 249877686 -32315978 + MIR SINE MIR 21 146 -62 457 283 110 64 chr1 249879202 249879388 -32314276 + MIR SINE MIR 30 229 -33 444 226 23 38 chr1 249879388 249879521 -32314143 - MER94 DNA DNA -3 131 1 457 283 110 64 chr1 249879521 249879553 -32314111 + MIR SINE MIR 229 258 -4 29 47 0 0 chr1 249879553 249879596 -32314068 + AT_rich Low_complexity Low_complexity 1 43 0 430 314 15 0 chr1 249880136 249880273 -32313391 - MIR3 SINE MIR -16 192 54 297 128 0 0 chr1 249880492 249880539 -32313125 + (A)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr1 249880804 249880835 -32312829 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 462 153 0 12 chr1 249881771 249881856 -32311808 + L1MA4 LINE L1 6206 6289 -11 27 29 0 0 chr1 249882188 249882222 -32311442 + AT_rich Low_complexity Low_complexity 1 34 0 243 133 0 0 chr1 249882277 249882322 -32311342 + (A)n Simple_repeat Simple_repeat 1 45 0 314 263 33 112 chr1 249882412 249882564 -32311100 - MIR SINE MIR -74 188 49 1658 128 8 0 chr1 249882568 249882810 -32310854 - AluSx SINE Alu -15 297 54 750 168 5 105 chr1 249882845 249883036 -32310628 + FAM SINE Alu 2 173 -2 1603 119 34 0 chr1 249883897 249884132 -32309532 + AluSq SINE Alu 3 245 -68 203 276 17 17 chr1 249884305 249884363 -32309301 + L2 LINE L2 3252 3309 -4 2250 163 34 21 chr1 249884394 249884812 -32308852 + MSTB LTR MaLR 1 423 -3 2272 105 3 0 chr1 249885009 249885315 -32308349 - AluSx SINE Alu -5 307 1 1782 126 44 41 chr1 249885321 249885615 -32308049 - AluJo SINE Alu -17 295 1 2143 114 0 7 chr1 249885806 249886095 -32307569 + AluSg1 SINE Alu 1 287 -22 240 111 0 0 chr1 249886095 249886131 -32307533 + (TA)n Simple_repeat Simple_repeat 2 37 0 2534 49 0 3 chr1 249886284 249886590 -32307074 - AluY SINE Alu -6 305 1 764 250 0 0 chr1 249886816 249886976 -32306688 + MER5A DNA MER1_type 24 183 -6 331 281 56 25 chr1 249887387 249887547 -32306117 + MIR SINE MIR 47 211 -51 507 161 129 48 chr1 249887556 249887680 -32305984 + MER5B DNA MER1_type 45 178 0 345 306 116 0 chr1 249887749 249887870 -32305794 + MIR SINE MIR 19 153 -109 189 0 0 0 chr1 249888103 249888124 -32305540 + (T)n Simple_repeat Simple_repeat 1 21 0 486 272 82 20 chr1 249888174 249888321 -32305343 + MER5B DNA MER1_type 17 172 -6 723 214 6 73 chr1 249888944 249889122 -32304542 - FRAM SINE Alu 0 166 1 745 163 194 12 chr1 249889636 249889796 -32303868 + MER5A DNA MER1_type 1 189 0 239 79 26 0 chr1 249890738 249890776 -32302888 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 317 86 99 7 chr1 249891287 249891438 -32302226 + (TTATA)n Simple_repeat Simple_repeat 1 165 0 364 354 57 31 chr1 249891622 249891814 -32301850 + L2 LINE L2 3076 3272 0 375 314 50 25 chr1 249892533 249892654 -32301010 + L2 LINE L2 3184 3307 -6 231 255 0 0 chr1 249892696 249892747 -32300917 + L2 LINE L2 3261 3311 -2 304 310 0 18 chr1 249893735 249893848 -32299816 + (CAT)n Simple_repeat Simple_repeat 3 113 0 328 317 178 5 chr1 249893867 249894069 -32299595 - MIR SINE MIR -24 238 2 276 77 0 0 chr1 249894580 249894619 -32299045 + (CA)n Simple_repeat Simple_repeat 1 39 0 233 29 29 0 chr1 249895249 249895283 -32298381 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 816 184 0 7 chr1 249895290 249895426 -32298238 - FRAM SINE Alu -36 140 6 272 143 0 0 chr1 249895543 249895585 -32298079 - AluSp SINE Alu -122 181 140 405 253 10 0 chr1 249895767 249895866 -32297798 + MIR SINE MIR 41 140 -122 279 337 11 0 chr1 249896075 249896167 -32297497 - MIR SINE MIR -10 252 160 365 316 0 65 chr1 249896224 249896379 -32297285 - MIR SINE MIR -98 164 20 24 0 0 0 chr1 249896510 249896534 -32297130 + AT_rich Low_complexity Low_complexity 1 24 0 236 371 0 9 chr1 249897241 249897346 -32296318 - MIR SINE MIR -94 168 65 247 404 40 0 chr1 249897751 249897902 -32295762 + MIR3 SINE MIR 49 205 -3 273 98 0 0 chr1 249900165 249900206 -32293458 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 263 235 0 0 chr1 249902232 249902283 -32291381 - MIR SINE MIR -111 151 101 716 253 84 0 chr1 249902818 249903020 -32290644 + MIR SINE MIR 1 219 -43 189 0 0 0 chr1 249903275 249903296 -32290368 + (CA)n Simple_repeat Simple_repeat 2 22 0 224 270 50 40 chr1 249906188 249906288 -32287376 + MIR SINE MIR 111 211 -51 461 314 72 22 chr1 249908956 249909179 -32284485 - MIR SINE MIR -26 236 3 194 241 35 69 chr1 249909744 249909802 -32283862 - L2 LINE L2 -15 3257 3202 753 287 81 40 chr1 249909958 249910306 -32283358 + L2 LINE L2 2911 3272 0 230 264 22 0 chr1 249910413 249910504 -32283160 + (TA)n Simple_repeat Simple_repeat 2 94 0 953 189 0 0 chr1 249910555 249910708 -32282956 + FRAM SINE Alu 1 152 -24 387 292 19 50 chr1 249912087 249912248 -32281416 - MIR SINE MIR -34 228 73 4807 22 0 0 chr1 249912260 249912814 -32280850 + L1PA3 LINE L1 5598 6151 -4 21 36 0 0 chr1 249913289 249913317 -32280347 + AT_rich Low_complexity Low_complexity 1 28 0 336 309 128 25 chr1 249913809 249914013 -32279651 + MIR SINE MIR 21 245 -17 295 333 43 49 chr1 249914103 249914265 -32279399 + MER5A DNA MER1_type 1 161 -28 389 171 0 178 chr1 249914326 249914362 -32279302 - FLAM_A SINE Alu -195 107 66 2180 113 3 0 chr1 249914362 249914654 -32279010 - AluSx SINE Alu -19 293 1 389 171 0 178 chr1 249914654 249914746 -32278918 - FLAM_A SINE Alu -236 66 2 431 331 61 34 chr1 249914806 249915217 -32278447 - LTR33 LTR ERVL 0 521 100 549 302 28 17 chr1 249915404 249915583 -32278081 - MIR SINE MIR -13 249 69 181 191 16 79 chr1 249916875 249916938 -32276726 - L3 LINE CR1 -239 1338 1280 435 248 57 23 chr1 249917071 249917220 -32276444 - MIR3 SINE MIR 0 208 53 272 316 139 33 chr1 249918110 249918325 -32275339 - MIR SINE MIR -24 238 1 503 0 0 31 chr1 249918523 249918587 -32275077 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 1732 184 0 3 chr1 249918588 249918876 -32274788 - AluJo SINE Alu -25 287 1 262 294 62 55 chr1 249918877 249919023 -32274641 - MIR SINE MIR -93 169 23 211 280 0 0 chr1 249920916 249920966 -32272698 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 318 153 0 0 chr1 249920966 249921025 -32272639 + (TTCA)n Simple_repeat Simple_repeat 4 62 0 645 162 0 0 chr1 249921092 249921197 -32272467 - FLAM_A SINE Alu -10 132 28 238 333 9 38 chr1 249922140 249922245 -32271419 - MER102b DNA MER1_type -6 335 234 210 37 0 0 chr1 249922777 249922804 -32270860 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr1 249924010 249924037 -32269627 + AT_rich Low_complexity Low_complexity 1 27 0 231 256 240 33 chr1 249924089 249924210 -32269454 - MIR SINE MIR -72 190 45 1816 161 0 47 chr1 249924877 249925194 -32268470 - AluJo SINE Alu -10 302 1 408 352 116 40 chr1 249925410 249925647 -32268017 + L2 LINE L2 2243 2461 -853 1602 155 73 43 chr1 249925647 249925950 -32267714 - AluJb SINE Alu 0 312 1 408 352 116 40 chr1 249925950 249926291 -32267373 + L2 LINE L2 2461 2865 -449 271 272 97 90 chr1 249926360 249926650 -32267014 + L2 LINE L2 2933 3224 -48 192 354 108 31 chr1 249927617 249927747 -32265917 + MIR SINE MIR 8 147 -115 715 289 242 22 chr1 249928198 249928562 -32265102 - LTR16A LTR ERVL -6 444 1 597 162 17 0 chr1 249929186 249929534 -32264130 + (TA)n Simple_repeat Simple_repeat 1 354 0 233 353 57 0 chr1 249929793 249929915 -32263749 + MIR SINE MIR 86 214 -48 315 264 82 0 chr1 249930669 249930779 -32262885 - MIR SINE MIR -70 138 20 414 229 0 73 chr1 249931162 249931271 -32262393 - L2 LINE L2 -5 3308 3208 25 51 0 0 chr1 249933408 249933447 -32260217 + AT_rich Low_complexity Low_complexity 1 39 0 267 255 10 59 chr1 249936370 249936472 -32257192 - L2 LINE L2 -15 3298 3202 14589 131 25 18 chr1 249936884 249937289 -32256375 + Tigger1 DNA MER2_type 1 402 -2016 2240 109 10 0 chr1 249937289 249937591 -32256073 + AluSg SINE Alu 1 305 -5 14589 131 25 18 chr1 249937591 249939588 -32254076 + Tigger1 DNA MER2_type 402 2418 0 215 316 35 0 chr1 249939606 249939663 -32254001 - MIR3 SINE MIR -52 156 98 709 277 87 39 chr1 249939820 249940232 -32253432 + MLT1J1 LTR MaLR 3 434 -12 259 326 41 0 chr1 249940241 249940339 -32253325 + MIR SINE MIR 53 154 -108 198 333 49 29 chr1 249940591 249940693 -32252971 - L2 LINE L2 -407 2907 2804 343 285 241 4 chr1 249940784 249941012 -32252652 + MLT1L LTR MaLR 324 605 -10 2177 153 72 15 chr1 249941072 249941477 -32252187 + MSTA LTR MaLR 1 428 0 196 374 0 0 chr1 249941758 249941841 -32251823 - MIR3 SINE MIR -13 195 113 2240 209 70 34 chr1 249943185 249943688 -32249976 + MLT1F LTR MaLR 1 521 -21 240 295 139 16 chr1 249943721 249943850 -32249814 + L2 LINE L2 3167 3311 -2 23 0 0 0 chr1 249943925 249943948 -32249716 + AT_rich Low_complexity Low_complexity 1 23 0 28 88 0 10 chr1 249945224 249945298 -32248366 + AT_rich Low_complexity Low_complexity 1 75 -26 2239 120 10 0 chr1 249945298 249945607 -32248057 - AluSx SINE Alu 0 312 1 28 88 0 10 chr1 249945607 249945634 -32248030 + AT_rich Low_complexity Low_complexity 75 101 0 384 284 88 75 chr1 249946161 249946492 -32247172 + HAL1 LINE L1 499 833 -1674 189 288 0 50 chr1 249946542 249946622 -32247042 + L2 LINE L2 1686 1761 -1553 203 0 0 36 chr1 249946839 249946867 -32246797 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2127 116 0 0 chr1 249946871 249947156 -32246508 - AluSg SINE Alu -25 285 1 923 194 15 29 chr1 249947157 249947363 -32246301 - L1MC3 LINE L1 -99 7686 7484 202 357 0 0 chr1 249947508 249947578 -32246086 + GA-rich Low_complexity Low_complexity 3 72 0 204 40 0 0 chr1 249949577 249949602 -32244062 + (T)n Simple_repeat Simple_repeat 1 25 0 751 254 109 0 chr1 249950143 249950344 -32243320 - MIR SINE MIR -12 250 28 1545 57 0 0 chr1 249951251 249951445 -32242219 - L1PA5 LINE L1 -3 6151 5958 197 279 98 0 chr1 249952486 249952547 -32241117 - L3 LINE CR1 -3 1574 1508 288 0 0 0 chr1 249952664 249952696 -32240968 + (TG)n Simple_repeat Simple_repeat 2 33 0 1816 222 118 34 chr1 249956415 249956743 -32236921 + L1ME2 LINE L1 5449 5748 -416 236 77 26 0 chr1 249956743 249956782 -32236882 + (TG)n Simple_repeat Simple_repeat 1 40 0 1816 222 118 34 chr1 249956782 249957066 -32236598 + L1ME2 LINE L1 5748 6112 -52 183 361 139 0 chr1 249957237 249957359 -32236305 - MIR3 SINE MIR -60 148 10 23 0 0 0 chr1 249957905 249957928 -32235736 + AT_rich Low_complexity Low_complexity 1 23 0 6367 138 70 12 chr1 249958295 249958797 -32234867 + Tigger3b DNA MER2_type 4 476 -2552 339 25 0 0 chr1 249958797 249958837 -32234827 + (TG)n Simple_repeat Simple_repeat 2 41 0 6367 138 70 12 chr1 249958837 249959495 -32234169 + Tigger3b DNA MER2_type 476 1231 0 232 289 16 70 chr1 249959540 249959668 -32233996 + L2 LINE L2 2934 3054 -218 693 198 0 0 chr1 249959803 249959919 -32233745 - FLAM_C SINE Alu -25 118 3 2116 153 12 0 chr1 249959941 249960281 -32233383 + MER2 DNA MER2_type 1 344 0 1870 148 13 13 chr1 249961014 249961348 -32232316 - AluJb SINE Alu 0 312 1 30 27 0 0 chr1 249961683 249961720 -32231944 + AT_rich Low_complexity Low_complexity 1 37 0 1166 173 94 18 chr1 249961725 249962002 -32231662 + L1MD2 LINE L1 6057 6354 -5 188 411 33 0 chr1 249962011 249962101 -32231563 + L2 LINE L2 3163 3255 -17 473 250 29 0 chr1 249962366 249962470 -32231194 - Tigger3(Golem) DNA MER2_type -1 3028 2922 274 204 111 0 chr1 249962653 249962707 -32230957 - MIR SINE MIR -79 183 124 236 121 152 76 chr1 249963280 249963346 -32230318 + MIR SINE MIR 97 167 -95 2262 112 0 0 chr1 249963460 249963755 -32229909 - AluSx SINE Alu -17 295 1 2506 52 0 7 chr1 249964811 249965117 -32228547 + AluY SINE Alu 1 304 -7 180 77 0 0 chr1 249967057 249967083 -32226581 + (CA)n Simple_repeat Simple_repeat 2 27 0 207 143 29 0 chr1 249967723 249967758 -32225906 - L2 LINE L2 -15 3298 3263 2178 95 3 48 chr1 249969056 249969371 -32224293 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr1 249969541 249969568 -32224096 + AT_rich Low_complexity Low_complexity 1 27 0 1258 115 36 0 chr1 249969779 249969971 -32223693 + MER30 DNA MER1_type 1 199 -31 402 94 0 0 chr1 249970235 249970299 -32223365 + (TG)n Simple_repeat Simple_repeat 1 64 0 2204 115 0 25 chr1 249970807 249971128 -32222536 + AluSq SINE Alu 1 313 0 22 35 0 0 chr1 249971342 249971371 -32222293 + AT_rich Low_complexity Low_complexity 1 29 0 2961 60 0 0 chr1 249975131 249975501 -32218163 + L1P3 LINE L1 5402 5771 -383 1312 178 68 14 chr1 249975648 249975941 -32217723 - L1MC3 LINE L1 -310 7475 7167 242 295 0 0 chr1 249975941 249976002 -32217662 - MLT1F1 LTR MaLR -472 95 35 221 136 0 23 chr1 249976194 249976238 -32217426 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 288 315 131 34 chr1 249976243 249976539 -32217125 - L2 LINE L2 -10 3303 2856 404 324 60 6 chr1 249976618 249976800 -32216864 - L2 LINE L2 -580 2734 2543 617 235 37 12 chr1 249976817 249976979 -32216685 + MIR SINE MIR 82 247 -15 243 293 27 0 chr1 249978682 249978757 -32214907 - Charlie4 DNA MER1_type 0 1961 1885 865 191 76 9 chr1 249979067 249979292 -32214372 - L1MA9 LINE L1 -38 6274 6035 564 215 0 0 chr1 249979317 249979424 -32214240 - FLAM_A SINE Alu -20 122 16 355 189 0 119 chr1 249979440 249979599 -32214065 - L1MA9 LINE L1 -271 6041 5902 1468 159 24 14 chr1 249979601 249979890 -32213774 - L1MA9 LINE L1 -745 5567 5276 183 278 289 0 chr1 249980098 249980195 -32213469 - L2 LINE L2 0 3272 3148 1058 155 0 0 chr1 249980564 249980732 -32212932 - MER45A DNA AcHobo 0 178 11 385 282 148 0 chr1 249980812 249980954 -32212710 - MIR SINE MIR 0 262 100 24 0 0 0 chr1 249982231 249982255 -32211409 + AT_rich Low_complexity Low_complexity 1 24 0 248 337 58 0 chr1 249986096 249986182 -32207482 - L3 LINE CR1 -7 1570 1480 1644 186 32 0 chr1 249986516 249986795 -32206869 - AluJb SINE Alu -24 288 1 227 218 0 55 chr1 249987008 249987063 -32206601 + polypurine Low_complexity Low_complexity 1 52 0 230 312 65 0 chr1 249987121 249987198 -32206466 - MIR SINE MIR -33 229 148 198 0 0 0 chr1 249987397 249987419 -32206245 + (A)n Simple_repeat Simple_repeat 1 22 0 221 22 87 0 chr1 249988631 249988677 -32204987 + (TA)n Simple_repeat Simple_repeat 2 51 0 220 229 21 0 chr1 249988769 249988817 -32204847 + (TATG)n Simple_repeat Simple_repeat 3 51 0 311 301 20 34 chr1 249988826 249988972 -32204692 - L1MC4 LINE L1 -1323 6719 6576 313 305 106 49 chr1 249991612 249991838 -32201826 + MIR SINE MIR 14 252 -10 574 271 60 25 chr1 249993287 249993486 -32200178 - MIR SINE MIR -8 254 49 832 92 23 0 chr1 249994378 249994509 -32199155 + L1MA8 LINE L1 6157 6290 -1 4571 89 50 9 chr1 249996670 249997334 -32196330 - L1PA11 LINE L1 0 6174 5484 1689 181 3 0 chr1 249999475 249999757 -32193907 + AluJo SINE Alu 1 283 -29 423 0 0 0 chr1 249999761 249999808 -32193856 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 24 67 0 0 chr1 249999808 249999853 -32193811 + AT_rich Low_complexity Low_complexity 1 45 0 254 376 34 8 chr1 250001226 250001343 -32192321 + MIR3 SINE MIR 88 207 -1 26 39 0 20 chr1 250002217 250002228 -32191436 + AT_rich Low_complexity Low_complexity 1 11 -39 2102 126 3 0 chr1 250002228 250002521 -32191143 + AluSx SINE Alu 1 294 -18 26 39 0 20 chr1 250002521 250002560 -32191104 + AT_rich Low_complexity Low_complexity 11 50 0 217 264 42 42 chr1 250004663 250004735 -32188929 - MIR SINE MIR -73 189 118 291 237 74 37 chr1 250005130 250005265 -32188399 + L1ME4a LINE L1 5961 6100 -21 280 274 147 0 chr1 250005497 250005592 -32188072 + MIR SINE MIR 57 165 -97 528 268 58 32 chr1 250007414 250007604 -32186060 - MIR SINE MIR -36 226 32 2297 99 3 0 chr1 250007612 250007915 -32185749 - AluSx SINE Alu -8 304 1 360 270 33 46 chr1 250009193 250009345 -32184319 + MIR SINE MIR 70 219 -43 2398 71 3 0 chr1 250009355 250009650 -32184014 + AluY SINE Alu 1 296 -15 2224 116 7 0 chr1 250009755 250010047 -32183617 + AluSx SINE Alu 1 294 -18 568 223 52 61 chr1 250010102 250010331 -32183333 - LTR37A LTR ERV1 -122 304 78 1533 188 103 49 chr1 250010566 250011008 -32182656 + MER31B LTR ERV1 1 543 0 1195 235 28 89 chr1 250011058 250011450 -32182214 + MER31B-int LTR ERV1 15 382 -4554 1379 221 16 3 chr1 250011450 250011753 -32181911 + Tigger7 DNA MER2_type 1 307 -426 304 285 252 33 chr1 250012264 250012506 -32181158 + HAL1 LINE L1 826 1120 -1387 2483 187 74 135 chr1 250012645 250012793 -32180871 - MER21A LTR ERV1 -6 925 770 1876 144 20 23 chr1 250012793 250013092 -32180572 - AluSx SINE Alu -14 298 1 2483 187 74 135 chr1 250013092 250013211 -32180453 - MER21A LTR ERV1 -161 770 645 1960 163 0 3 chr1 250013211 250013512 -32180152 - AluJo SINE Alu -12 300 1 2483 187 74 135 chr1 250013512 250014216 -32179448 - MER21A LTR ERV1 -286 645 12 242 197 49 0 chr1 250014223 250014284 -32179380 + L1MEd LINE L1 324 387 -5732 2357 68 156 186 chr1 250014308 250014947 -32178717 - pTR5 LTR ERV1 0 2438 66 1444 123 53 49 chr1 250015110 250015395 -32178269 + Tigger3(Golem) DNA MER2_type 2744 3029 0 961 223 42 0 chr1 250016964 250017157 -32176507 + MIR SINE MIR 41 241 -21 2241 92 3 7 chr1 250017180 250017474 -32176190 - AluSx SINE Alu -17 295 3 894 179 67 40 chr1 250017529 250017753 -32175911 - AluJo SINE Alu -81 231 2 1276 234 67 46 chr1 250018875 250019336 -32174328 + HsTC2a DNA Tc2 11 481 -263 11483 98 43 55 chr1 250019338 250021526 -32172138 + L1P3 LINE L1 9 2138 -4323 3819 121 47 0 chr1 250021626 250022261 -32171403 - L1P LINE L1 -1483 4663 3999 21 0 0 0 chr1 250022270 250022291 -32171373 + AT_rich Low_complexity Low_complexity 1 21 0 205 215 31 31 chr1 250022635 250022700 -32170964 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 209 274 20 0 chr1 250022837 250022888 -32170776 + GA-rich Low_complexity Low_complexity 5 56 0 819 201 73 19 chr1 250022915 250023191 -32170473 + L1MC5 LINE L1 6959 7247 -728 1013 210 41 55 chr1 250023323 250023761 -32169903 + L1MC5 LINE L1 7268 7699 -262 353 246 108 0 chr1 250024501 250024631 -32169033 - L1MD2 LINE L1 -2 6357 6214 908 151 104 0 chr1 250024645 250024837 -32168827 - L1PA16 LINE L1 -17 6149 5938 552 200 5 116 chr1 250024831 250025046 -32168618 - L1MD2 LINE L1 -131 6228 6038 * 2136 101 3 3 chr1 250025046 250025334 -32168330 + AluSg SINE Alu 1 288 -22 241 287 30 20 chr1 250025487 250025588 -32168076 - MER5A DNA MER1_type 0 189 88 25 51 0 0 chr1 250025921 250025960 -32167704 + AT_rich Low_complexity Low_complexity 1 39 0 214 352 49 14 chr1 250026303 250026445 -32167219 + L2 LINE L2 1883 2029 -1285 182 340 125 43 chr1 250026457 250026848 -32166816 + L2 LINE L2 2553 2975 -339 367 247 0 34 chr1 250027318 250027407 -32166257 - MIR SINE MIR -121 141 56 1880 158 20 7 chr1 250028213 250028511 -32165153 - AluSx SINE Alu -10 302 1 1856 121 7 15 chr1 250028723 250028996 -32164668 + AluY SINE Alu 23 293 -18 794 189 0 14 chr1 250029016 250029164 -32164500 + LTR8 LTR ERV1 546 691 0 803 164 121 39 chr1 250029251 250029483 -32164181 + LTR45B LTR ERV1 225 475 -14 399 191 136 0 chr1 250029554 250029701 -32163963 + L1M4c LINE L1 967 1133 -5251 4863 219 88 11 chr1 250029713 250031286 -32162378 + L1 LINE L1 2816 4510 -1636 613 283 40 5 chr1 250032061 250032284 -32161380 - L1ME LINE L1 -299 5822 5592 262 254 0 16 chr1 250032290 250032353 -32161311 + (CA)n Simple_repeat Simple_repeat 2 63 0 310 296 148 19 chr1 250032353 250032515 -32161149 - L1ME LINE L1 -531 5590 5408 25 0 0 0 chr1 250033362 250033387 -32160277 + AT_rich Low_complexity Low_complexity 1 25 0 18622 149 68 15 chr1 250033392 250037215 -32156449 + L1M1 LINE L1 24 4055 -3510 1210 147 118 0 chr1 250037647 250037858 -32155806 + MER46A DNA MER2_type 1 236 0 239 231 165 74 chr1 250037923 250038044 -32155620 - MIR3 SINE MIR -71 137 6 1709 161 67 85 chr1 250039882 250040318 -32153346 + MSTA LTR MaLR 1 428 0 531 234 133 37 chr1 250040537 250040725 -32152939 - MIR SINE MIR -12 250 45 405 303 69 11 chr1 250041066 250041254 -32152410 + Charlie7 DNA MER1_type 12 210 -2402 219 346 74 31 chr1 250042869 250043031 -32150633 - L2 LINE L2 -5 3308 3140 264 329 102 0 chr1 250043082 250043219 -32150445 - L2 LINE L2 -260 3012 2862 219 267 107 61 chr1 250043273 250043404 -32150260 - L2 LINE L2 -722 2592 2456 983 188 6 0 chr1 250043703 250043884 -32149780 + AluJb SINE Alu 88 269 -43 265 258 141 55 chr1 250044134 250044262 -32149402 + MER5A DNA MER1_type 47 185 -4 197 328 0 0 chr1 250044236 250044297 -32149367 - L2 LINE L2 -7 3265 3205 * 2504 54 0 0 chr1 250044423 250044718 -32148946 - AluY SINE Alu -16 295 1 240 309 12 0 chr1 250045302 250045386 -32148278 + L1M4 LINE L1 4080 4164 -1982 28 0 0 0 chr1 250046238 250046266 -32147398 + AT_rich Low_complexity Low_complexity 1 28 0 443 293 38 25 chr1 250048344 250048501 -32145163 + L2 LINE L2 223 381 -2933 576 322 150 10 chr1 250048985 250049299 -32144365 + L2 LINE L2 2955 3312 -1 592 286 148 24 chr1 250049310 250049642 -32144022 + L2 LINE L2 2939 3311 -2 2443 82 0 0 chr1 250050014 250050308 -32143356 + AluSc SINE Alu 1 294 -15 344 308 119 63 chr1 250050449 250050798 -32142866 + L1MEd LINE L1 841 1178 -1329 377 314 174 4 chr1 250050857 250051093 -32142571 + L1MC4a LINE L1 5787 6062 -1746 189 204 151 86 chr1 250052732 250052884 -32140780 - MIR SINE MIR -88 174 13 208 295 35 73 chr1 250053044 250053195 -32140469 - MIR3 SINE MIR -109 153 14 309 100 0 0 chr1 250053686 250053736 -32139928 + (CA)n Simple_repeat Simple_repeat 1 50 0 237 62 62 0 chr1 250055215 250055263 -32138401 + (TA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr1 250055341 250055364 -32138300 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr1 250055377 250055404 -32138260 + AT_rich Low_complexity Low_complexity 1 27 0 187 297 62 16 chr1 250056358 250056422 -32137242 - L2 LINE L2 0 3272 3206 377 290 39 39 chr1 250056550 250056705 -32136959 - MIR SINE MIR -12 250 96 456 274 54 86 chr1 250056778 250057219 -32136445 + MLT1H LTR MaLR 108 534 -15 189 0 0 0 chr1 250057219 250057240 -32136424 + (A)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr1 250058471 250058499 -32135165 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 873 220 154 0 chr1 250059369 250059596 -32134068 + MER21B LTR ERV1 49 310 -553 488 283 42 37 chr1 250059666 250059857 -32133807 + L2 LINE L2 3117 3308 -5 201 176 0 0 chr1 250059898 250059932 -32133732 + MIR SINE MIR 214 247 -15 21 57 0 0 chr1 250060220 250060255 -32133409 + AT_rich Low_complexity Low_complexity 1 35 0 2220 102 0 0 chr1 250063142 250063427 -32130237 + AluSg SINE Alu 1 285 -25 2107 117 3 0 chr1 250063654 250063944 -32129720 + AluSx SINE Alu 1 291 -21 241 287 30 20 chr1 250064097 250064198 -32129466 - MER5A DNA MER1_type 0 189 88 25 51 0 0 chr1 250064531 250064570 -32129094 + AT_rich Low_complexity Low_complexity 1 39 0 312 358 162 13 chr1 250065833 250066216 -32127448 + L3b LINE CR1 1123 1562 -21 1934 168 70 14 chr1 250066679 250067108 -32126556 + L1MB3 LINE L1 5731 6183 0 306 50 0 0 chr1 250067234 250067274 -32126390 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 202 273 0 0 chr1 250067275 250067330 -32126334 - L2 LINE L2 -2 3311 3257 262 327 119 28 chr1 250067477 250067777 -32125887 - L2 LINE L2 -211 3061 2743 414 342 43 82 chr1 250068592 250068896 -32124768 - L2 LINE L2 -47 3225 2934 2128 122 0 0 chr1 250069952 250070231 -32123433 + AluSg SINE Alu 1 279 -31 353 307 77 26 chr1 250070299 250070537 -32123127 + L1ME LINE L1 5255 5512 -650 198 71 0 0 chr1 250070561 250070589 -32123075 + (TG)n Simple_repeat Simple_repeat 2 29 0 482 135 0 115 chr1 250070592 250070696 -32122968 - FRAM SINE Alu -30 146 55 554 301 132 0 chr1 250070903 250071116 -32122548 + MIR SINE MIR 19 259 -3 1098 221 103 33 chr1 250071336 250071734 -32121930 + MER63B DNA MER1_type 11 436 0 1927 117 40 75 chr1 250072041 250072083 -32121581 - THE1B LTR MaLR 0 364 322 2090 138 0 0 chr1 250072083 250072380 -32121284 + AluSx SINE Alu 1 297 -15 1927 117 40 75 chr1 250072380 250072713 -32120951 - THE1B LTR MaLR -42 322 2 200 259 0 69 chr1 250072846 250072904 -32120760 + L2 LINE L2 3214 3267 -5 2906 207 81 54 chr1 250072997 250073552 -32120112 - MER21B LTR ERV1 -1 862 277 2239 116 0 0 chr1 250073552 250073846 -32119818 - AluSg SINE Alu -16 294 1 2906 207 81 54 chr1 250073846 250074091 -32119573 - MER21B LTR ERV1 -586 277 40 234 62 0 0 chr1 250074424 250074456 -32119208 + (CA)n Simple_repeat Simple_repeat 2 33 0 183 156 0 0 chr1 250074634 250074666 -32118998 + GA-rich Low_complexity Low_complexity 1 32 0 412 182 0 0 chr1 250078440 250078517 -32115147 + MER116 DNA Mariner 4 80 0 195 42 0 0 chr1 250080044 250080068 -32113596 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5296 147 8 0 chr1 250080070 250081086 -32112578 - L1PA16 LINE L1 -20 6146 5120 260 311 47 47 chr1 250081218 250081324 -32112340 - MER91C DNA MER1_type -1 139 34 229 307 10 15 chr1 250082501 250082619 -32111045 + A-rich Low_complexity Low_complexity 5 198 0 290 339 27 0 chr1 250082716 250082828 -32110836 - MIR3 SINE MIR -7 201 87 1821 126 77 0 chr1 250084856 250085141 -32108523 - AluSx SINE Alu -5 307 1 371 108 108 65 chr1 250085718 250085811 -32107853 - MER63 DNA MER1_type -339 723 1 640 265 98 46 chr1 250085926 250086315 -32107349 + MLT1J2 LTR MaLR 38 446 -4 410 127 0 0 chr1 250086419 250086482 -32107182 + AluS SINE Alu 1 63 -255 1179 126 0 0 chr1 250086483 250086650 -32107014 + AluSg/x SINE Alu 145 311 -1 2146 118 7 0 chr1 250087958 250088255 -32105409 - AluSx SINE Alu -13 299 1 219 327 112 0 chr1 250088293 250088400 -32105264 + L2 LINE L2 3149 3267 -5 315 0 0 0 chr1 250089860 250089895 -32103769 + (TG)n Simple_repeat Simple_repeat 2 36 0 226 146 18 18 chr1 250089996 250090051 -32103613 + (TA)n Simple_repeat Simple_repeat 2 56 0 232 222 56 65 chr1 250092899 250093007 -32100657 + HsTC2 DNA Tc2 93 199 -1699 4345 141 17 11 chr1 250093039 250093820 -32099844 - L1MA5 LINE L1 -1 6299 5515 195 167 0 56 chr1 250094279 250094315 -32099349 - MIR SINE MIR -134 74 41 340 285 28 56 chr1 250094753 250094897 -32098767 - MIR SINE MIR -50 212 73 1660 133 39 86 chr1 250095074 250095365 -32098299 + MER2 DNA MER2_type 1 273 -71 2029 136 40 7 chr1 250095365 250095666 -32097998 - AluSx SINE Alu -1 311 1 1660 133 39 86 chr1 250095666 250095735 -32097929 + MER2 DNA MER2_type 273 344 0 23 0 0 0 chr1 250095995 250096018 -32097646 + AT_rich Low_complexity Low_complexity 1 23 0 452 131 0 12 chr1 250096134 250096218 -32097446 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 * 573 88 0 0 chr1 250096202 250096282 -32097382 + (TCTCC)n Simple_repeat Simple_repeat 5 84 0 1653 143 9 97 chr1 250096286 250096628 -32097036 - AluJb SINE Alu 0 312 1 3601 147 56 0 chr1 250096638 250097279 -32096385 - L1MC1 LINE L1 0 6333 5657 345 109 0 0 chr1 250098149 250098204 -32095460 + (TG)n Simple_repeat Simple_repeat 2 56 0 205 305 119 49 chr1 250098244 250098470 -32095194 - MIR SINE MIR -1 261 20 969 115 0 0 chr1 250098731 250098861 -32094803 + AluSq/x SINE Alu 1 130 -182 261 83 0 0 chr1 250098900 250098936 -32094728 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1971 157 0 22 chr1 250102367 250102680 -32090984 + AluSx SINE Alu 2 307 -5 877 302 70 27 chr1 250102717 250103253 -32090411 - L2 LINE L2 -5 3308 2742 324 260 0 77 chr1 250104326 250104430 -32089234 - MIR SINE MIR -74 188 93 360 182 0 0 chr1 250104958 250105046 -32088618 + (CA)n Simple_repeat Simple_repeat 2 89 0 2203 94 40 0 chr1 250105909 250106208 -32087456 - AluSq SINE Alu -2 311 1 1434 181 25 35 chr1 250106372 250106654 -32087010 + AluJo SINE Alu 21 299 -13 1876 164 3 13 chr1 250106749 250107048 -32086616 + AluJb SINE Alu 6 301 -11 2317 95 0 0 chr1 250109783 250110079 -32083585 - AluSx SINE Alu -16 296 1 354 290 187 7 chr1 250110956 250111111 -32082553 + MER5A DNA MER1_type 7 189 0 183 245 0 88 chr1 250114330 250114432 -32079232 + L2 LINE L2 3146 3238 -75 201 250 0 19 chr1 250114433 250114485 -32079179 - L2 LINE L2 -8 3305 3255 265 354 35 0 chr1 250114717 250114830 -32078834 + L2 LINE L2 3151 3267 -5 283 385 68 18 chr1 250114841 250115062 -32078602 - L2 LINE L2 -340 2974 2743 2098 126 0 23 chr1 250115923 250116232 -32077432 + AluSg SINE Alu 1 302 -8 280 344 0 0 chr1 250116526 250116616 -32077048 + (TATATG)n Simple_repeat Simple_repeat 6 95 0 1861 184 3 0 chr1 250117740 250118044 -32075620 - AluJb SINE Alu -7 305 1 186 295 139 8 chr1 250120830 250120952 -32072712 + MIR SINE MIR 38 175 -87 1531 197 23 3 chr1 250120990 250121116 -32072548 + AluJo SINE Alu 1 123 -189 189 0 0 0 chr1 250121116 250121137 -32072527 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1531 197 23 3 chr1 250121137 250121314 -32072350 + AluJo SINE Alu 123 310 -2 23 33 0 0 chr1 250122822 250122852 -32070812 + AT_rich Low_complexity Low_complexity 1 30 0 311 196 0 0 chr1 250123606 250123662 -32070002 + L2 LINE L2 3209 3264 -8 23 33 0 0 chr1 250124064 250124094 -32069570 + AT_rich Low_complexity Low_complexity 1 30 0 2247 82 6 25 chr1 250124614 250124932 -32068732 - AluSq SINE Alu -1 312 1 456 269 12 44 chr1 250125816 250125976 -32067688 + MIR SINE MIR 59 213 -49 190 343 30 0 chr1 250127549 250127616 -32066048 + MIR3 SINE MIR 97 165 -43 1564 195 11 3 chr1 250127704 250127991 -32065673 - AluSx SINE Alu 0 312 24 28 0 0 0 chr1 250128111 250128139 -32065525 + AT_rich Low_complexity Low_complexity 1 28 0 196 328 60 0 chr1 250128455 250128522 -32065142 + MIR3 SINE MIR 97 167 -41 2283 113 10 0 chr1 250128610 250128919 -32064745 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 250128945 250128973 -32064691 + AT_rich Low_complexity Low_complexity 1 28 0 258 105 0 0 chr1 250129424 250129462 -32064202 + (T)n Simple_repeat Simple_repeat 1 38 0 181 316 40 26 chr1 250129972 250130048 -32063616 - L2 LINE L2 -5 3308 3232 300 282 98 30 chr1 250130278 250130907 -32062757 + L1ME3A LINE L1 4883 5565 -597 353 333 106 16 chr1 250130909 250131221 -32062443 + L1ME3A LINE L1 5605 5944 -226 1920 110 4 11 chr1 250131262 250131563 -32062101 + AluSg SINE Alu 20 318 0 306 0 0 0 chr1 250131926 250131960 -32061704 + (CA)n Simple_repeat Simple_repeat 1 34 0 188 351 0 0 chr1 250131967 250132024 -32061640 - MER5B DNA MER1_type -1 177 121 1636 233 55 81 chr1 250133044 250133713 -32059951 + L1ME3A LINE L1 5517 6168 -2 2055 173 33 30 chr1 250133757 250134306 -32059358 - MLT2A2 LTR ERVL -8 546 1 345 137 29 29 chr1 250134863 250134965 -32058699 + CT-rich Low_complexity Low_complexity 1 102 0 620 26 13 0 chr1 250135079 250135157 -32058507 + (TTCCC)n Simple_repeat Simple_repeat 5 83 0 2333 94 7 7 chr1 250135514 250135823 -32057841 + AluSq SINE Alu 1 309 -4 3696 238 56 20 chr1 250136101 250137330 -32056334 + L1ME1 LINE L1 1002 2274 -4266 * 5331 248 56 33 chr1 250137325 250140642 -32053022 + L1ME1 LINE L1 2791 6237 -323 2125 115 6 19 chr1 250140642 250140955 -32052709 + AluSq SINE Alu 2 310 -3 5331 248 56 33 chr1 250140955 250141262 -32052402 + L1ME1 LINE L1 6237 6535 -25 229 231 51 51 chr1 250141799 250141877 -32051787 + MIR SINE MIR 65 142 -120 997 208 5 0 chr1 250142283 250142475 -32051189 + AluJb SINE Alu 120 312 0 240 35 0 0 chr1 250143106 250143135 -32050529 + (T)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr1 250143756 250143778 -32049886 + AT_rich Low_complexity Low_complexity 1 22 0 1005 222 0 0 chr1 250145064 250145253 -32048411 + MER5A DNA MER1_type 1 189 0 2686 232 61 34 chr1 250145402 250145851 -32047813 - L1ME1 LINE L1 -10 6225 5790 1818 108 0 0 chr1 250145851 250146091 -32047573 + AluSg SINE Alu 55 294 -16 2686 232 61 34 chr1 250146091 250146720 -32046944 - L1ME1 LINE L1 -445 5790 5117 2521 238 59 45 chr1 250146725 250146807 -32046857 - L1ME1 LINE L1 -4049 2347 2268 1235 140 45 5 chr1 250146807 250147028 -32046636 - L1MA5 LINE L1 -3 6297 6068 2521 238 59 45 chr1 250147028 250147942 -32045722 - L1ME1 LINE L1 -4128 2268 1337 318 267 23 0 chr1 250147966 250148052 -32045612 - L1ME1 LINE L1 -5436 960 873 1862 154 4 4 chr1 250148059 250148339 -32045325 - AluSx SINE Alu -32 280 1 3060 262 31 10 chr1 250148340 250149205 -32044459 - L1ME1 LINE L1 -5476 920 38 266 264 296 6 chr1 250149298 250149457 -32044207 - MIR SINE MIR -42 220 16 185 243 0 0 chr1 250149532 250149569 -32044095 - L2 LINE L2 -17 3255 3219 * 433 288 131 6 chr1 250149564 250149724 -32043940 + MIR SINE MIR 48 227 -35 2355 89 7 0 chr1 250149862 250150166 -32043498 - AluY SINE Alu -5 306 1 438 327 20 30 chr1 250150183 250150385 -32043279 - MIR SINE MIR -26 236 37 22 0 0 0 chr1 250150582 250150604 -32043060 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr1 250151931 250151961 -32041703 + (TG)n Simple_repeat Simple_repeat 2 31 0 430 277 45 19 chr1 250152809 250152964 -32040700 + MIR SINE MIR 86 244 -18 1796 157 27 38 chr1 250155208 250155577 -32038087 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr1 250157449 250157471 -32036193 + AT_rich Low_complexity Low_complexity 1 22 0 907 128 158 6 chr1 250158809 250158973 -32034691 + MER20B DNA MER1_type 31 219 0 23 0 0 0 chr1 250160034 250160057 -32033607 + AT_rich Low_complexity Low_complexity 1 23 0 300 278 99 37 chr1 250160271 250160352 -32033312 + L1ME LINE L1 5599 5673 -448 1013 210 73 0 chr1 250160352 250160557 -32033107 + MER58A DNA MER1_type 4 223 -1 300 278 99 37 chr1 250160557 250160666 -32032998 + L1ME LINE L1 5673 5801 -320 600 273 48 95 chr1 250161649 250161986 -32031678 - L2 LINE L2 -7 3306 2986 185 339 68 0 chr1 250162025 250162084 -32031580 - L2 LINE L2 -38 3234 3172 188 67 33 0 chr1 250162150 250162180 -32031484 + (CA)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr1 250163739 250163768 -32029896 + AT_rich Low_complexity Low_complexity 1 29 0 14175 123 26 47 chr1 250165860 250168328 -32025336 + Tigger1 DNA MER2_type 1 2418 0 2251 92 0 7 chr1 250169558 250169852 -32023812 - AluY SINE Alu -19 292 1 27 0 0 0 chr1 250169920 250169947 -32023717 + AT_rich Low_complexity Low_complexity 1 27 0 192 77 0 0 chr1 250170860 250170886 -32022778 + (T)n Simple_repeat Simple_repeat 1 26 0 2448 144 33 9 chr1 250171379 250171803 -32021861 + MER57B LTR ERV1 1 434 0 234 130 56 0 chr1 250172497 250172551 -32021113 + MER20B DNA MER1_type 601 657 -126 1863 169 0 0 chr1 250172551 250172862 -32020802 - AluJo SINE Alu 0 314 4 22 0 0 0 chr1 250173951 250173973 -32019691 + AT_rich Low_complexity Low_complexity 1 22 0 2026 108 10 39 chr1 250173997 250174302 -32019362 - AluSx SINE Alu -16 296 1 313 223 21 0 chr1 250175402 250175496 -32018168 + CT-rich Low_complexity Low_complexity 1 96 0 2110 182 36 48 chr1 250176171 250177158 -32016506 - L1M2 LINE L1 -714 5586 4651 323 339 0 0 chr1 250177264 250177376 -32016288 + HsTC2 DNA Tc2 495 606 -1292 463 224 104 104 chr1 250177408 250177600 -32016064 + HsTC2 DNA Tc2 700 891 -1007 1816 252 86 40 chr1 250177667 250178309 -32015355 + L2 LINE L2 2024 2694 -620 2929 212 70 24 chr1 250178365 250179154 -32014510 - L1ME2 LINE L1 -22 6142 5318 525 290 135 11 chr1 250179156 250179454 -32014210 + L2 LINE L2 2688 3012 -301 258 105 0 0 chr1 250179623 250179661 -32014003 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 298 227 9 136 chr1 250179662 250179772 -32013892 + L2 LINE L2 3168 3263 -50 1484 206 18 0 chr1 250179957 250180257 -32013407 + AluJo SINE Alu 1 305 0 227 246 18 0 chr1 250180334 250180391 -32013273 + (TA)n Simple_repeat Simple_repeat 1 58 0 468 248 88 0 chr1 250180460 250180585 -32013079 - MIR SINE MIR -75 187 52 280 0 0 0 chr1 250181129 250181160 -32012504 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 1723 175 3 18 chr1 250181160 250181447 -32012217 - AluJo SINE Alu -30 282 1 514 262 129 41 chr1 250181570 250182036 -32011628 + L1M4 LINE L1 4733 5239 -907 272 91 23 0 chr1 250183109 250183153 -32010511 + (TTTTC)n Simple_repeat Simple_repeat 3 47 0 439 298 122 5 chr1 250183502 250183698 -32009966 + MIR SINE MIR 34 251 -11 181 337 0 35 chr1 250183740 250183826 -32009838 + L3b LINE CR1 1310 1392 -191 515 317 83 44 chr1 250184293 250184779 -32008885 - L2 LINE L2 -26 3246 2744 789 314 204 18 chr1 250186051 250186449 -32007215 + MER115 DNA AcHobo 74 545 -148 579 250 169 7 chr1 250186458 250186606 -32007058 - MER5A DNA MER1_type -9 180 9 489 198 159 0 chr1 250186617 250186743 -32006921 + MER115 DNA AcHobo 541 686 -7 5458 184 35 20 chr1 250187617 250189538 -32004126 - L1MC1 LINE L1 -5 6328 4381 438 280 70 14 chr1 250189676 250189819 -32003845 - L2 LINE L2 0 3313 3163 204 97 0 0 chr1 250189867 250189898 -32003766 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2302 94 3 3 chr1 250190144 250190443 -32003221 - AluSp SINE Alu -14 299 1 22 0 0 0 chr1 250192213 250192235 -32001429 + AT_rich Low_complexity Low_complexity 1 22 0 301 362 58 12 chr1 250193221 250193393 -32000271 + MIR3 SINE MIR 44 222 -40 1560 308 14 12 chr1 250193487 250194036 -31999628 + L2 LINE L2 2472 3021 -292 2296 104 3 0 chr1 250194110 250194408 -31999256 + AluSp SINE Alu 9 307 -6 1096 112 37 0 chr1 250194734 250194921 -31998743 + L1MA4 LINE L1 6093 6286 -14 357 24 0 0 chr1 250196844 250196886 -31996778 + (TG)n Simple_repeat Simple_repeat 1 42 0 306 73 0 0 chr1 250197895 250197936 -31995728 + (CA)n Simple_repeat Simple_repeat 2 42 0 211 263 93 51 chr1 250198092 250198210 -31995454 - MIR SINE MIR -77 131 9 1556 246 18 15 chr1 250198275 250198670 -31994994 + MSTD LTR MaLR 1 396 0 880 209 5 30 chr1 250198759 250198960 -31994704 + MER58A DNA MER1_type 29 224 0 782 217 77 19 chr1 250200104 250200311 -31993353 + MIR SINE MIR 34 252 -10 436 340 121 26 chr1 250200831 250201573 -31992091 + L2 LINE L2 2246 3055 -217 193 349 16 0 chr1 250201577 250201640 -31992024 - L2 LINE L2 -18 3295 3232 792 297 96 4 chr1 250201880 250202109 -31991555 + MIR SINE MIR 13 262 0 329 107 0 18 chr1 250202258 250202314 -31991350 + (CA)n Simple_repeat Simple_repeat 2 56 0 403 285 92 72 chr1 250203508 250203715 -31989949 + MIR SINE MIR 7 217 -45 1984 148 0 0 chr1 250203788 250204072 -31989592 - AluJb SINE Alu -12 300 17 330 87 0 0 chr1 250204232 250204278 -31989386 + (TG)n Simple_repeat Simple_repeat 2 47 0 1089 272 155 28 chr1 250206545 250207007 -31986657 + MER69 DNA AcHobo 1 534 -1992 1544 175 29 19 chr1 250207007 250207124 -31986540 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr1 250207124 250207146 -31986518 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1544 175 29 19 chr1 250207146 250207337 -31986327 + AluJb SINE Alu 115 312 0 1089 272 155 28 chr1 250207337 250207378 -31986286 + MER69 DNA AcHobo 534 568 -1958 * 2159 163 18 11 chr1 250207376 250207830 -31985834 + MER69 DNA AcHobo 2010 2466 -60 1181 258 100 24 chr1 250208315 250208695 -31984969 + LTR16C LTR ERVL 80 488 -3 1512 159 87 18 chr1 250209749 250210025 -31983639 + AluJb SINE Alu 11 305 -7 2249 124 21 21 chr1 250211217 250211604 -31982060 + Tigger2a DNA MER2_type 3 389 -45 1921 156 21 24 chr1 250211656 250211996 -31981668 + MER1B DNA MER1_type 1 339 0 367 302 129 7 chr1 250212148 250212287 -31981377 - L2 LINE L2 0 3313 3158 357 93 0 0 chr1 250212311 250212365 -31981299 + (GGATG)n Simple_repeat Simple_repeat 1 54 0 422 269 56 9 chr1 250212941 250213049 -31980615 + L2 LINE L2 3193 3305 -8 370 304 128 26 chr1 250213388 250213615 -31980049 + L2 LINE L2 3010 3259 -54 180 0 0 0 chr1 250213636 250213656 -31980008 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 189 0 0 0 chr1 250215105 250215126 -31978538 + (CA)n Simple_repeat Simple_repeat 2 22 0 2158 77 14 17 chr1 250215228 250215525 -31978139 - AluY SINE Alu -15 296 1 687 328 88 11 chr1 250215777 250216140 -31977524 + L2 LINE L2 2457 2847 -467 180 398 41 36 chr1 250216166 250216362 -31977302 + L2 LINE L2 2956 3152 -120 253 352 56 28 chr1 250217399 250217507 -31976157 - L2 LINE L2 0 3272 3162 357 321 98 29 chr1 250219985 250220217 -31973447 - MIR SINE MIR -3 259 13 186 43 0 0 chr1 250220372 250220395 -31973269 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2092 181 78 11 chr1 250220818 250221255 -31972409 - MLT1C LTR MaLR 0 467 2 180 286 36 60 chr1 250222072 250222156 -31971508 - L2 LINE L2 0 3313 3232 * 966 305 31 3 chr1 250222136 250222496 -31971168 - L2 LINE L2 -245 3068 2698 208 196 39 0 chr1 250222646 250222660 -31971004 + GA-rich Low_complexity Low_complexity 2 14 -40 2119 148 0 0 chr1 250222660 250222970 -31970694 + AluSx SINE Alu 3 312 0 208 196 39 0 chr1 250222970 250223006 -31970658 + GA-rich Low_complexity Low_complexity 14 54 0 1478 218 136 62 chr1 250223149 250223648 -31970016 + MLT1F LTR MaLR 1 536 -6 405 292 112 6 chr1 250223865 250224026 -31969638 + MIR SINE MIR 21 198 -64 238 198 11 33 chr1 250224165 250224256 -31969408 + (TAA)n Simple_repeat Simple_repeat 1 89 0 2194 125 43 6 chr1 250224877 250225228 -31968436 + THE1B LTR MaLR 1 364 0 285 198 105 12 chr1 250225885 250225971 -31967693 - MIR3 SINE MIR -53 155 62 2300 126 8 0 chr1 250227161 250227518 -31966146 - MER46B DNA MER2_type -1 235 1 224 149 21 0 chr1 250228349 250228396 -31965268 + CT-rich Low_complexity Low_complexity 2 49 0 310 367 0 18 chr1 250228402 250228511 -31965153 - L2 LINE L2 -6 3307 3201 381 273 78 8 chr1 250228844 250228972 -31964692 - MIR SINE MIR -106 156 20 2408 107 0 0 chr1 250230332 250230642 -31963022 - AluSg SINE Alu 0 310 1 292 289 0 39 chr1 250232626 250232730 -31960934 - MER69 DNA AcHobo -1 2525 2426 369 257 0 0 chr1 250232730 250232804 -31960860 - MER69 DNA AcHobo -2452 74 1 1537 199 22 85 chr1 250233450 250233861 -31959803 - MLT1B LTR MaLR -5 385 1 21 57 0 0 chr1 250234778 250234813 -31958851 + AT_rich Low_complexity Low_complexity 1 35 0 189 107 0 0 chr1 250236002 250236030 -31957634 + (A)n Simple_repeat Simple_repeat 1 28 0 365 322 45 20 chr1 250236108 250236310 -31957354 + MIR SINE MIR 50 256 -6 802 204 64 60 chr1 250236361 250236596 -31957068 - MER46C DNA MER2_type -87 251 16 363 325 121 21 chr1 250236848 250237088 -31956576 + L2 LINE L2 2620 2883 -431 208 326 128 0 chr1 250238280 250238366 -31955298 + L2 LINE L2 3171 3267 -5 262 221 169 0 chr1 250238904 250238981 -31954683 - MIR3 SINE MIR -36 172 83 231 36 0 0 chr1 250239667 250239695 -31953969 + (CA)n Simple_repeat Simple_repeat 1 28 0 273 281 31 0 chr1 250239946 250240010 -31953654 - tRNA-Ile-ATT tRNA tRNA -3 74 9 259 307 11 11 chr1 250241345 250241433 -31952231 + L2 LINE L2 3225 3312 -1 387 174 0 0 chr1 250241433 250241519 -31952145 + GA-rich Low_complexity Low_complexity 1 86 0 2424 74 0 0 chr1 250242687 250242983 -31950681 + AluY SINE Alu 1 296 -15 798 245 11 22 chr1 250243338 250243522 -31950142 - MIR SINE MIR -16 246 65 386 246 9 15 chr1 250243538 250243675 -31949989 - MIR SINE MIR -61 147 13 369 62 0 0 chr1 250245476 250245524 -31948140 + (CA)n Simple_repeat Simple_repeat 1 48 0 339 25 0 0 chr1 250245523 250245563 -31948101 + (GA)n Simple_repeat Simple_repeat 2 41 0 * 279 190 0 0 chr1 250248793 250248851 -31944813 + CT-rich Low_complexity Low_complexity 1 58 0 596 273 26 13 chr1 250249127 250249281 -31944383 + MIR3 SINE MIR 32 187 -21 643 203 102 89 chr1 250249384 250249699 -31943965 + MER33 DNA MER1_type 2 320 -4 818 250 97 5 chr1 250249712 250249908 -31943756 + MER58C DNA MER1_type 2 215 0 2338 131 35 16 chr1 250250282 250250649 -31943015 + THE1C LTR MaLR 2 375 0 400 234 9 90 chr1 250250649 250250760 -31942904 + MER81 DNA DNA 9 110 -4 195 246 18 18 chr1 250250954 250251011 -31942653 + MIR SINE MIR 84 140 -122 722 161 29 7 chr1 250252200 250252337 -31941327 + L1MB7 LINE L1 6045 6184 0 388 316 68 23 chr1 250252483 250252660 -31941004 - MIR SINE MIR -70 192 8 432 275 29 7 chr1 250253734 250253872 -31939792 + MIR SINE MIR 76 216 -46 911 144 0 0 chr1 250253872 250254004 -31939660 + FLAM_C SINE Alu 2 133 0 6611 100 8 8 chr1 250254508 250255498 -31938166 + L1PA13 LINE L1 5173 6162 -1 2131 161 37 11 chr1 250255915 250256270 -31937394 - THE1B LTR MaLR 0 364 1 10962 92 2 81 chr1 250256270 250257985 -31935679 - THE1B-int LTR MaLR 0 1580 1 2165 158 19 30 chr1 250257985 250258353 -31935311 - THE1B LTR MaLR 0 364 1 353 320 33 0 chr1 250259364 250259486 -31934178 - MIR SINE MIR -130 132 7 405 31 31 16 chr1 250260216 250260280 -31933384 + (CA)n Simple_repeat Simple_repeat 1 65 0 21 0 0 0 chr1 250260498 250260519 -31933145 + AT_rich Low_complexity Low_complexity 1 21 0 206 118 0 0 chr1 250262633 250262667 -31930997 + (CA)n Simple_repeat Simple_repeat 1 34 0 842 298 82 9 chr1 250263156 250263471 -31930193 + L2 LINE L2 2267 2604 -710 399 300 92 41 chr1 250264754 250265127 -31928537 + L2 LINE L2 2649 3057 -256 419 244 106 0 chr1 250265138 250265261 -31928403 + MER103 DNA DNA 20 155 -11 183 375 11 11 chr1 250267572 250267660 -31926004 + MIR SINE MIR 30 117 -91 1573 173 50 4 chr1 250267692 250267850 -31925814 - AluJo SINE Alu -22 290 112 198 0 0 0 chr1 250267850 250267872 -31925792 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1573 173 50 4 chr1 250267872 250267990 -31925674 - AluJo SINE Alu -200 112 1 761 197 39 0 chr1 250268943 250269070 -31924594 + FLAM_A SINE Alu 2 133 0 2120 130 0 0 chr1 250269092 250269377 -31924287 + AluSx SINE Alu 1 285 -27 330 26 0 0 chr1 250269381 250269420 -31924244 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 259 378 71 16 chr1 250271015 250271142 -31922522 + L2 LINE L2 2685 2818 -496 1839 134 66 179 chr1 250271146 250271661 -31922003 - LTR32 LTR ERVL 0 471 15 712 274 168 88 chr1 250271856 250272221 -31921443 + MLT1J2 LTR MaLR 16 409 0 564 307 133 33 chr1 250273606 250273639 -31920025 + HAL1b LINE L1 59 87 -1261 1529 102 79 9 chr1 250273639 250273854 -31919810 - MER30 DNA MER1_type 0 230 1 564 307 133 33 chr1 250273854 250274521 -31919143 + HAL1b LINE L1 87 829 -519 452 153 16 74 chr1 250274808 250274998 -31918666 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 406 211 74 0 chr1 250275009 250275104 -31918560 + L1MC5 LINE L1 7307 7408 -553 1009 277 27 42 chr1 250275202 250275570 -31918094 + L1MC5 LINE L1 6614 6986 -1009 619 267 104 25 chr1 250275577 250275817 -31917847 + L1MC5 LINE L1 7272 7530 -431 21 0 0 0 chr1 250276005 250276026 -31917638 + AT_rich Low_complexity Low_complexity 1 21 0 574 254 35 23 chr1 250276055 250276228 -31917436 - MER5B DNA MER1_type -3 175 1 393 282 132 23 chr1 250276506 250276680 -31916984 - MIR SINE MIR -50 212 20 229 244 0 0 chr1 250276781 250276826 -31916838 + GA-rich Low_complexity Low_complexity 4 48 0 240 311 0 0 chr1 250276847 250276921 -31916743 + MER103 DNA DNA 44 117 -49 906 257 14 67 chr1 250277016 250277362 -31916302 + L2 LINE L2 2986 3313 0 683 320 22 0 chr1 250278188 250278413 -31915251 + MARNA DNA Mariner 30 259 -327 182 328 75 37 chr1 250278430 250278564 -31915100 - MER5A DNA MER1_type -12 177 39 2565 145 73 5 chr1 250278694 250279093 -31914571 - MSTB LTR MaLR 0 426 1 700 271 109 9 chr1 250279348 250279569 -31914095 + MIR SINE MIR 20 262 0 2373 99 3 0 chr1 250279956 250280268 -31913396 - AluSp SINE Alu 0 313 1 3684 89 6 4 chr1 250280719 250281189 -31912475 + L1PA10 LINE L1 5682 6152 -16 341 273 99 33 chr1 250282759 250282880 -31910784 + L2 LINE L2 3185 3313 0 249 300 154 15 chr1 250283157 250283287 -31910377 - MER5A DNA MER1_type -3 186 39 339 268 89 9 chr1 250283342 250283454 -31910210 + MIR SINE MIR 17 137 -71 288 91 0 0 chr1 250283475 250283519 -31910145 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 339 198 0 93 chr1 250284688 250284774 -31908890 - Charlie8 DNA MER1_type -2208 209 132 187 194 0 0 chr1 250284779 250284815 -31908849 + L2 LINE L2 3274 3309 -4 845 267 34 13 chr1 250284868 250285104 -31908560 + MIR SINE MIR 1 241 -21 531 127 0 13 chr1 250286175 250286254 -31907410 + FLAM SINE Alu 44 121 -22 3938 179 61 35 chr1 250286264 250287272 -31906392 + L1MB5 LINE L1 5142 6173 -1 1651 172 0 11 chr1 250287528 250287807 -31905857 - AluJo SINE Alu -30 282 7 22 35 0 0 chr1 250287947 250287976 -31905688 + AT_rich Low_complexity Low_complexity 1 29 0 796 149 7 35 chr1 250289422 250289563 -31904101 - AluJo SINE Alu -165 147 11 428 63 32 0 chr1 250290874 250290937 -31902727 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 201 231 26 51 chr1 250290957 250291035 -31902629 + CT-rich Low_complexity Low_complexity 3 78 0 272 102 20 0 chr1 250292762 250292811 -31900853 + (CGG)n Simple_repeat Simple_repeat 3 52 0 222 221 65 0 chr1 250296579 250296656 -31897008 + (CATATA)n Simple_repeat Simple_repeat 4 85 0 25 31 0 0 chr1 250296695 250296727 -31896937 + AT_rich Low_complexity Low_complexity 1 32 0 396 0 0 0 chr1 250297273 250297317 -31896347 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 213 209 23 0 chr1 250299468 250299511 -31894153 + L3b LINE CR1 1285 1328 -255 356 361 18 6 chr1 250300192 250300361 -31893303 - MER5A DNA MER1_type -6 183 13 230 238 24 36 chr1 250300477 250300561 -31893103 + (TA)n Simple_repeat Simple_repeat 2 84 0 236 174 47 70 chr1 250300636 250300722 -31892942 + L1MC4 LINE L1 6620 6703 -1339 228 223 21 11 chr1 250300724 250300818 -31892846 + (TA)n Simple_repeat Simple_repeat 2 96 0 344 274 11 11 chr1 250300871 250300966 -31892698 - MIR SINE MIR -120 142 48 313 282 0 27 chr1 250302477 250302587 -31891077 + MIR SINE MIR 152 258 -4 2469 44 44 0 chr1 250302724 250303020 -31890644 - AluY SINE Alu -2 309 1 1241 175 18 14 chr1 250303126 250303343 -31890321 - MER20 DNA MER1_type 0 219 2 235 313 60 52 chr1 250304961 250305095 -31888569 + MIR3 SINE MIR 33 167 -41 3055 90 0 5 chr1 250305460 250305862 -31887802 + MLT2A1 LTR ERVL 1 400 -44 192 167 0 0 chr1 250305871 250305919 -31887745 + (TA)n Simple_repeat Simple_repeat 1 48 0 323 78 78 0 chr1 250305921 250305972 -31887692 + MLT2A1 LTR ERVL 399 453 0 227 176 216 0 chr1 250306636 250306687 -31886977 + MIR SINE MIR 85 146 -116 2075 129 3 3 chr1 250306864 250307159 -31886505 - AluSx SINE Alu -17 295 1 216 330 41 31 chr1 250307284 250307381 -31886283 + MIR SINE MIR 1 98 -164 258 327 9 18 chr1 250307456 250307569 -31886095 + CT-rich Low_complexity Low_complexity 1 112 0 206 32 32 0 chr1 250307726 250307757 -31885907 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 630 267 41 20 chr1 250307830 250308025 -31885639 + MIR SINE MIR 49 247 -15 820 257 54 9 chr1 250308166 250308388 -31885276 - MIR SINE MIR 0 262 31 211 283 0 0 chr1 250308668 250308721 -31884943 + (CACCAT)n Simple_repeat Simple_repeat 3 55 0 448 335 5 35 chr1 250308914 250309117 -31884547 - MIR SINE MIR -15 247 51 279 0 0 0 chr1 250309676 250309707 -31883957 + (A)n Simple_repeat Simple_repeat 1 31 0 341 216 24 16 chr1 250310187 250310312 -31883352 + GA-rich Low_complexity Low_complexity 1 126 0 2233 113 0 3 chr1 250310526 250310826 -31882838 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 250310974 250311005 -31882659 + AT_rich Low_complexity Low_complexity 1 31 0 642 157 0 3 chr1 250311039 250311257 -31882407 + AluJo SINE Alu 6 288 -24 1310 218 13 4 chr1 250311444 250311678 -31881986 + MER8 DNA MER2_type 1 236 -3 490 285 61 49 chr1 250311681 250311927 -31881737 - MIR SINE MIR 0 262 14 234 116 0 0 chr1 250315597 250315640 -31878024 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 539 299 61 14 chr1 250316009 250316223 -31877441 + MIR SINE MIR 6 229 -33 380 250 46 19 chr1 250316224 250316332 -31877332 - L2 LINE L2 -3 3269 3159 350 267 200 11 chr1 250316370 250316549 -31877115 - MIR SINE MIR -32 230 19 264 30 0 0 chr1 250317106 250317139 -31876525 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2599 58 0 6 chr1 250317141 250317453 -31876211 - AluY SINE Alu -1 310 1 2535 74 3 0 chr1 250317698 250318008 -31875656 - AluSp SINE Alu -2 311 1 648 223 8 0 chr1 250318103 250318224 -31875440 - FLAM_A SINE Alu -11 122 1 200 308 26 60 chr1 250318908 250319025 -31874639 - MIR SINE MIR -142 120 8 238 200 0 46 chr1 250319117 250319182 -31874482 + C-rich Low_complexity Low_complexity 4 65 0 260 273 26 0 chr1 250319936 250320013 -31873651 - MIR3 SINE MIR -15 193 115 252 282 24 12 chr1 250320581 250320666 -31872998 + GA-rich Low_complexity Low_complexity 3 88 0 2318 97 0 13 chr1 250321933 250322273 -31871391 - AluSc SINE Alu 0 336 1 243 125 0 0 chr1 250324861 250324901 -31868763 + (T)n Simple_repeat Simple_repeat 1 40 0 25 51 0 0 chr1 250326477 250326516 -31867148 + AT_rich Low_complexity Low_complexity 1 39 0 472 247 86 13 chr1 250328847 250329018 -31864646 - MIR SINE MIR -70 192 3 561 274 43 12 chr1 250329602 250329766 -31863898 + MIR3 SINE MIR 16 184 -24 1798 151 3 7 chr1 250329978 250330263 -31863401 + AluJo SINE Alu 10 293 -19 42 20 0 0 chr1 250330318 250330367 -31863297 + AT_rich Low_complexity Low_complexity 1 49 0 1790 156 3 11 chr1 250330368 250330651 -31863013 - AluJo SINE Alu -29 283 3 237 83 0 0 chr1 250331486 250331522 -31862142 + (TG)n Simple_repeat Simple_repeat 2 37 0 289 304 0 13 chr1 250331522 250331601 -31862063 + Charlie4 DNA MER1_type 1884 1961 0 754 201 93 0 chr1 250332221 250332360 -31861304 + FAM SINE Alu 6 157 -28 326 336 60 0 chr1 250332870 250332986 -31860678 + MIR SINE MIR 8 130 -132 236 174 87 0 chr1 250333296 250333342 -31860322 + L2 LINE L2 3263 3312 -1 804 142 0 0 chr1 250333485 250333598 -31860066 + AluJb SINE Alu 85 197 -115 338 172 0 0 chr1 250333689 250333747 -31859917 + AluJb SINE Alu 199 256 -46 224 360 60 0 chr1 250334037 250334187 -31859477 + MIR SINE MIR 90 248 -14 21 0 0 0 chr1 250334310 250334331 -31859333 + AT_rich Low_complexity Low_complexity 1 21 0 574 254 35 23 chr1 250334359 250334532 -31859132 - MER5B DNA MER1_type -3 175 1 393 282 132 23 chr1 250334811 250334985 -31858679 - MIR SINE MIR -50 212 20 229 244 0 0 chr1 250335086 250335131 -31858533 + GA-rich Low_complexity Low_complexity 4 48 0 240 311 0 0 chr1 250335152 250335226 -31858438 + MER103 DNA DNA 44 117 -49 906 257 14 67 chr1 250335321 250335667 -31857997 + L2 LINE L2 2986 3313 0 683 320 22 0 chr1 250336493 250336718 -31856946 + MARNA DNA Mariner 30 259 -327 182 328 75 37 chr1 250336735 250336869 -31856795 - MER5A DNA MER1_type -12 177 39 2605 145 70 5 chr1 250336999 250337399 -31856265 - MSTB LTR MaLR 0 426 1 700 271 109 9 chr1 250337654 250337875 -31855789 + MIR SINE MIR 20 262 0 2368 99 3 0 chr1 250338262 250338574 -31855090 - AluSp SINE Alu 0 313 1 627 309 51 0 chr1 250338596 250338813 -31854851 - MIR SINE MIR -26 236 9 30 0 0 0 chr1 250338824 250338854 -31854810 + AT_rich Low_complexity Low_complexity 1 30 0 265 276 57 0 chr1 250338872 250338959 -31854705 - MIR SINE MIR -53 155 95 1762 156 0 40 chr1 250339832 250340133 -31853531 + AluJo SINE Alu 1 289 -23 207 0 0 0 chr1 250340133 250340156 -31853508 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 281 282 34 101 chr1 250340268 250340417 -31853247 - L2 LINE L2 -357 2957 2819 425 309 43 14 chr1 250340840 250340979 -31852685 + MIR3 SINE MIR 5 147 -61 358 286 129 28 chr1 250341766 250341944 -31851720 - MIR SINE MIR -32 230 35 324 148 0 0 chr1 250342823 250342884 -31850780 + (CA)n Simple_repeat Simple_repeat 1 61 0 2879 121 21 26 chr1 250344913 250345343 -31848321 + MSTA LTR MaLR 1 428 0 442 299 49 27 chr1 250346560 250346744 -31846920 - MER117 DNA MER1_type -9 188 1 2356 151 83 10 chr1 250346890 250347287 -31846377 - MSTA LTR MaLR 0 428 3 727 274 134 25 chr1 250348242 250348726 -31844938 + MLT1F LTR MaLR 1 537 -5 256 309 96 0 chr1 250349007 250349101 -31844563 + MLT1J-int LTR MaLR 445 547 -824 260 343 34 27 chr1 250349433 250349579 -31844085 + MLT1J-int LTR MaLR 738 884 -487 353 277 103 100 chr1 250349781 250350102 -31843562 + MLT1J-int LTR MaLR 1032 1353 -18 1855 157 0 29 chr1 250350174 250350486 -31843178 + AluJo SINE Alu 1 303 -9 2101 92 44 27 chr1 250351130 250351425 -31842239 - AluSc SINE Alu -7 302 3 1121 267 57 61 chr1 250351890 250352419 -31841245 + L2 LINE L2 2794 3313 0 231 315 56 0 chr1 250352983 250353072 -31840592 - L3b LINE CR1 -152 1431 1338 374 275 0 11 chr1 250353380 250353471 -31840193 + MIR SINE MIR 87 176 -86 489 316 53 11 chr1 250353545 250353732 -31839932 + MIR SINE MIR 3 197 -65 22 56 0 19 chr1 250353732 250353769 -31839895 + AT_rich Low_complexity Low_complexity 1 38 -15 1612 203 10 3 chr1 250353769 250354079 -31839585 + AluJo SINE Alu 1 312 0 22 56 0 19 chr1 250354079 250354095 -31839569 + AT_rich Low_complexity Low_complexity 38 53 0 753 276 23 16 chr1 250354487 250354744 -31838920 - MIR SINE MIR 0 262 4 1756 159 7 10 chr1 250355174 250355463 -31838201 + AluJo SINE Alu 1 288 -24 438 108 0 0 chr1 250355464 250355538 -31838126 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 252 286 14 129 chr1 250356365 250356512 -31837152 - L2 LINE L2 -4 3268 3139 465 323 120 50 chr1 250356672 250357489 -31836175 + L2 LINE L2 2443 3312 -1 306 0 0 0 chr1 250357580 250357614 -31836050 + (CA)n Simple_repeat Simple_repeat 2 35 0 664 312 103 35 chr1 250357716 250358200 -31835464 - L2 LINE L2 -452 2862 2346 505 296 46 0 chr1 250358293 250358445 -31835219 + MLT1J LTR MaLR 71 229 -282 255 235 110 103 chr1 250358661 250358797 -31834867 - L2 LINE L2 -992 2322 2186 294 296 42 0 chr1 250358810 250358881 -31834783 + MIR SINE MIR 32 105 -157 250 235 82 0 chr1 250358921 250359006 -31834658 - MLT1J1 LTR MaLR -8 438 347 2276 82 0 64 chr1 250359127 250359455 -31834209 - AluSp SINE Alu -6 307 1 3684 89 6 4 chr1 250359906 250360376 -31833288 + L1PA10 LINE L1 5682 6152 -16 341 273 99 33 chr1 250361945 250362066 -31831598 + L2 LINE L2 3185 3313 0 249 300 154 15 chr1 250362343 250362473 -31831191 - MER5A DNA MER1_type -3 186 39 339 268 89 9 chr1 250362528 250362640 -31831024 + MIR SINE MIR 17 137 -71 288 91 0 0 chr1 250362661 250362705 -31830959 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 339 198 0 93 chr1 250363874 250363960 -31829704 - Charlie8 DNA MER1_type -2208 209 132 187 194 0 0 chr1 250363965 250364001 -31829663 + L2 LINE L2 3274 3309 -4 845 267 34 13 chr1 250364054 250364290 -31829374 + MIR SINE MIR 1 241 -21 531 127 0 13 chr1 250365361 250365440 -31828224 + FLAM SINE Alu 44 121 -22 3938 179 61 35 chr1 250365450 250366458 -31827206 + L1MB5 LINE L1 5142 6173 -1 1651 172 0 11 chr1 250366714 250366993 -31826671 - AluJo SINE Alu -30 282 7 22 35 0 0 chr1 250367133 250367162 -31826502 + AT_rich Low_complexity Low_complexity 1 29 0 796 149 7 35 chr1 250368607 250368748 -31824916 - AluJo SINE Alu -165 147 11 428 63 32 0 chr1 250370061 250370124 -31823540 + (TTTC)n Simple_repeat Simple_repeat 4 68 0 201 231 26 51 chr1 250370144 250370222 -31823442 + CT-rich Low_complexity Low_complexity 3 78 0 278 87 22 0 chr1 250371967 250372013 -31821651 + (CGG)n Simple_repeat Simple_repeat 3 49 0 180 0 0 0 chr1 250374472 250374492 -31819172 + (TGGG)n Simple_repeat Simple_repeat 4 23 0 212 182 0 23 chr1 250375201 250375245 -31818419 + CT-rich Low_complexity Low_complexity 5 47 0 25 31 0 0 chr1 250376143 250376175 -31817489 + GC_rich Low_complexity Low_complexity 1 32 0 11490 207 50 18 chr1 250380813 250387201 -31806463 + L1MC3 LINE L1 30 8057 -8 281 276 179 28 chr1 250387556 250387701 -31805963 - MIR SINE MIR -89 173 7 23 0 0 0 chr1 250388060 250388083 -31805581 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr1 250389666 250389697 -31803967 + AT_rich Low_complexity Low_complexity 1 31 0 616 204 27 7 chr1 250390474 250390621 -31803043 + L1MD2 LINE L1 6194 6343 -16 373 246 16 57 chr1 250391082 250391204 -31802460 - MIR SINE MIR -56 206 90 2266 122 0 0 chr1 250391885 250392197 -31801467 - AluSx SINE Alu 0 312 1 27 49 0 0 chr1 250392348 250392389 -31801275 + AT_rich Low_complexity Low_complexity 1 41 0 387 210 40 20 chr1 250392719 250392819 -31800845 - L1ME1 LINE L1 -19 6147 6046 611 216 20 7 chr1 250392929 250393077 -31800587 + L1MD2 LINE L1 6196 6345 -14 2900 228 41 14 chr1 250393155 250393869 -31799795 - L1ME1 LINE L1 -112 6054 5322 296 169 268 14 chr1 250393882 250393953 -31799711 - AluJb SINE Alu -9 293 205 825 162 0 22 chr1 250393977 250394143 -31799521 - FLAM_C SINE Alu 0 163 1 189 0 0 0 chr1 250394161 250394182 -31799482 + (TG)n Simple_repeat Simple_repeat 2 22 0 3991 235 33 10 chr1 250394182 250395331 -31798333 - L1ME1 LINE L1 -851 5295 4121 2113 117 13 0 chr1 250395408 250395707 -31797957 - AluSp SINE Alu -10 303 1 2062 147 0 22 chr1 250396774 250397093 -31796571 - AluJo SINE Alu 0 312 1 425 283 14 0 chr1 250398610 250398748 -31794916 + MER103 DNA DNA 25 164 -2 346 157 24 0 chr1 250399372 250399455 -31794209 + (TA)n Simple_repeat Simple_repeat 1 85 0 186 227 32 7 chr1 250400334 250400488 -31793176 + (TA)n Simple_repeat Simple_repeat 1 158 0 21 36 0 0 chr1 250400679 250400707 -31792957 + AT_rich Low_complexity Low_complexity 1 28 0 481 177 115 0 chr1 250400711 250400807 -31792857 + MLT1B LTR MaLR 3 109 -281 783 176 0 0 chr1 250401401 250401526 -31792138 + FLAM_A SINE Alu 1 125 -8 222 312 20 41 chr1 250402235 250402387 -31791277 + MIR SINE MIR 50 197 -64 270 73 0 0 chr1 250402771 250402812 -31790852 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 325 235 163 0 chr1 250403263 250403361 -31790303 - MIR SINE MIR -70 192 79 202 230 220 10 chr1 250403443 250403543 -31790121 + L2 LINE L2 2764 2884 -430 609 271 98 20 chr1 250403547 250404004 -31789660 - LTR33 LTR ERVL 0 521 10 222 348 107 17 chr1 250404010 250404188 -31789476 + L2 LINE L2 2926 3119 -153 2801 176 77 60 chr1 250404336 250405119 -31788545 - L1MC4 LINE L1 -5 8037 7242 340 285 54 23 chr1 250405812 250405942 -31787722 + L2 LINE L2 3139 3272 0 1877 75 4 4 chr1 250405944 250406211 -31787453 + AluY SINE Alu 45 311 0 638 271 120 59 chr1 250406418 250406765 -31786899 - L1MD2 LINE L1 -2 6357 5972 2255 113 0 0 chr1 250406765 250407074 -31786590 - AluSx SINE Alu -3 309 1 638 271 120 59 chr1 250407074 250407202 -31786462 - L1MD2 LINE L1 -387 5972 5853 3024 176 92 35 chr1 250407285 250407826 -31785838 - L1MA9 LINE L1 -39 6273 5683 2127 117 3 3 chr1 250407826 250408135 -31785529 - AluSx SINE Alu -3 309 1 3024 176 92 35 chr1 250408135 250408279 -31785385 - L1MA9 LINE L1 -629 5683 5549 400 353 98 25 chr1 250408279 250408645 -31785019 + L2 LINE L2 2157 2549 -765 498 181 11 0 chr1 250408752 250408846 -31784818 - L1MA9 LINE L1 -39 6273 6179 468 322 71 6 chr1 250408846 250409029 -31784635 + MIR SINE MIR 68 262 0 211 241 36 48 chr1 250409031 250409114 -31784550 - L2 LINE L2 -2 3311 3230 1224 288 25 39 chr1 250409166 250409600 -31784064 + LTR16B LTR ERVL 37 464 0 860 330 36 38 chr1 250409600 250410051 -31783613 - L2 LINE L2 -181 3132 2671 1255 229 173 42 chr1 250410093 250410574 -31783090 + MLT1E LTR MaLR 1 544 -49 21 36 0 0 chr1 250410574 250410602 -31783062 + AT_rich Low_complexity Low_complexity 1 28 0 296 216 14 0 chr1 250410602 250410676 -31782988 + MLT1D LTR MaLR 431 505 0 1350 229 86 68 chr1 250410679 250411147 -31782517 - L2 LINE L2 -657 2657 2182 545 247 32 38 chr1 250411172 250411358 -31782306 + L2 LINE L2 2579 2763 -551 998 252 117 72 chr1 250411361 250411830 -31781834 - MLT1H LTR MaLR -3 546 57 242 389 9 0 chr1 250411862 250411970 -31781694 + L2 LINE L2 2757 2865 -449 2370 60 3 0 chr1 250411982 250412321 -31781343 - AluY SINE Alu 0 340 1 684 149 9 0 chr1 250412336 250412450 -31781214 - L1MC1 LINE L1 -17 6316 6202 313 295 157 55 chr1 250412537 250412561 -31781103 + L2 LINE L2 2947 2967 -346 1222 150 59 16 chr1 250412561 250412814 -31780850 - L1MA9 LINE L1 0 6312 6049 313 295 157 55 chr1 250412814 250413006 -31780658 + L2 LINE L2 2967 3185 -128 1624 197 62 17 chr1 250413594 250413949 -31779715 + MLT1A2 LTR MaLR 4 374 0 441 281 41 0 chr1 250414400 250414546 -31779118 + MLT1J2 LTR MaLR 16 167 -283 302 285 80 66 chr1 250415663 250415814 -31777850 - HAL1 LINE L1 -2342 165 13 207 273 78 16 chr1 250415893 250416021 -31777643 + L2 LINE L2 3099 3234 -79 413 250 99 72 chr1 250418432 250418584 -31775080 + MIR3 SINE MIR 40 195 -13 424 376 112 21 chr1 250418627 250419388 -31774276 - L2 LINE L2 -11 3261 2441 2466 198 72 8 chr1 250420300 250420789 -31772875 + MLT2B1 LTR ERVL 1 520 0 608 286 34 10 chr1 250421583 250421789 -31771875 + MIR SINE MIR 34 244 -18 203 158 53 0 chr1 250421757 250421795 -31771869 + L2 LINE L2 3258 3297 -16 * 22 70 0 0 chr1 250422529 250422572 -31771092 + AT_rich Low_complexity Low_complexity 1 43 0 350 301 40 16 chr1 250422746 250422986 -31770678 - L1MC4a LINE L1 -320 5850 5620 630 258 144 42 chr1 250423091 250423425 -31770239 + MLT1G1 LTR MaLR 213 580 -15 239 174 0 43 chr1 250423419 250423465 -31770199 - LTR23 LTR ERV1 -72 365 322 * 272 182 61 0 chr1 250423502 250423568 -31770096 - L1MC4a LINE L1 -2361 5447 5378 843 158 0 0 chr1 250423739 250423866 -31769798 - AluSc SINE Alu -49 260 134 236 401 29 0 chr1 250424109 250424246 -31769418 - MIR3 SINE MIR -32 176 36 584 141 0 11 chr1 250424287 250424379 -31769285 + AluJ/FLAM SINE Alu 1 91 -221 1457 167 4 13 chr1 250424379 250424697 -31768967 + AluSg SINE Alu 46 361 0 439 208 31 0 chr1 250424796 250424892 -31768772 - MLT1K LTR MaLR -1 587 489 430 298 44 0 chr1 250425067 250425181 -31768483 - MLT1K LTR MaLR -348 240 122 2889 233 72 31 chr1 250425671 250426528 -31767136 - L1ME1 LINE L1 -5 6161 5270 582 259 0 7 chr1 250426985 250427120 -31766544 - MLT1E1 LTR MaLR -497 157 24 2931 131 0 2 chr1 250427258 250427686 -31765978 - MSTA LTR MaLR 0 428 2 486 205 94 47 chr1 250428234 250428361 -31765303 - MER94 DNA DNA -1 133 1 183 80 0 0 chr1 250428405 250428430 -31765234 + (CA)n Simple_repeat Simple_repeat 1 25 0 25 31 0 0 chr1 250428556 250428588 -31765076 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr1 250431489 250431517 -31762147 + AT_rich Low_complexity Low_complexity 1 28 0 15093 135 12 9 chr1 250431793 250431838 -31761826 - Tigger1 DNA MER2_type 0 2418 2375 2376 127 3 37 chr1 250431838 250432022 -31761642 + THE1B LTR MaLR 1 167 -197 2226 96 33 0 chr1 250432022 250432325 -31761339 + AluSq SINE Alu 1 313 0 2376 127 3 37 chr1 250432325 250432517 -31761147 + THE1B LTR MaLR 167 364 0 15093 135 12 9 chr1 250432517 250434842 -31758822 - Tigger1 DNA MER2_type -43 2375 41 257 178 0 0 chr1 250435098 250435143 -31758521 - Tigger1 DNA MER2_type -2373 45 1 2499 248 93 18 chr1 250435895 250436081 -31757583 - L1ME2 LINE L1 0 6233 6062 555 239 68 0 chr1 250436081 250436198 -31757466 - FLAM_C SINE Alu -4 129 5 2499 248 93 18 chr1 250436198 250437650 -31756014 - L1ME2 LINE L1 -171 6062 4465 5966 139 35 6 chr1 250437653 250438730 -31754934 - L1MA3 LINE L1 0 6305 5200 2672 257 105 31 chr1 250438735 250440073 -31753591 - L1ME2 LINE L1 -1745 4470 3034 4479 197 37 5 chr1 250440092 250441342 -31752322 - L1MB2 LINE L1 -7 6164 4879 313 306 0 12 chr1 250441344 250441429 -31752235 - L1ME2 LINE L1 -3167 3048 2965 2002 266 64 47 chr1 250441519 250441851 -31751813 - L1ME2 LINE L1 -3980 2416 2091 2182 142 8 32 chr1 250441851 250442224 -31751440 + THE1B LTR MaLR 1 364 0 11121 106 10 3 chr1 250442224 250443790 -31749874 + THE1B-int LTR MaLR 1 1578 -2 2051 130 62 31 chr1 250443792 250444145 -31749519 + THE1B LTR MaLR 1 364 0 2002 266 64 47 chr1 250444145 250444370 -31749294 - L1ME2 LINE L1 -4305 2091 1871 1987 130 10 10 chr1 250444370 250444678 -31748986 + AluSx SINE Alu 1 308 -4 2002 266 64 47 chr1 250444678 250444888 -31748776 - L1ME2 LINE L1 -4525 1871 1666 2100 128 0 14 chr1 250444888 250445185 -31748479 - AluSx SINE Alu -19 293 1 2002 266 64 47 chr1 250445185 250445448 -31748216 - L1ME2 LINE L1 -4730 1666 1209 1199 217 12 56 chr1 250445450 250445791 -31747873 - L1MA9 LINE L1 -15 6297 5972 2314 75 0 0 chr1 250445793 250446085 -31747579 - AluY SINE Alu -19 292 1 2009 154 9 79 chr1 250446091 250446268 -31747396 - L1MA9 LINE L1 -626 5686 5498 180 0 0 0 chr1 250446268 250446288 -31747376 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1753 160 4 0 chr1 250446291 250446566 -31747098 - AluJb SINE Alu -36 276 1 2009 154 9 79 chr1 250446566 250446664 -31747000 - L1MA9 LINE L1 -816 5496 5393 1993 145 0 3 chr1 250446664 250446968 -31746696 - AluSx SINE Alu -9 303 1 2009 154 9 79 chr1 250446968 250447347 -31746317 - L1MA9 LINE L1 -919 5393 5067 684 258 48 36 chr1 250447376 250447985 -31745679 - L1ME2 LINE L1 -5033 1184 689 700 314 42 27 chr1 250448303 250448704 -31744960 - L1ME2 LINE L1 -5968 428 22 226 239 0 0 chr1 250449454 250449500 -31744164 + Tigger7 DNA MER2_type 1131 1176 -1311 2340 57 34 17 chr1 250449745 250450042 -31743622 + AluY SINE Alu 1 302 -9 2066 136 0 0 chr1 250450125 250450444 -31743220 + AluSx SINE Alu 1 312 0 552 88 66 0 chr1 250451435 250451526 -31742138 - L1PA10 LINE L1 -4 6164 6068 1612 233 2 31 chr1 250451772 250452227 -31741437 - L1PA10 LINE L1 -167 6001 5560 * 5605 118 8 38 chr1 250452203 250453134 -31740530 - L1P LINE L1 -1373 4773 3871 242 344 25 113 chr1 250454227 250454625 -31739039 + L2 LINE L2 2896 3258 -14 1759 147 7 18 chr1 250457821 250458128 -31735536 - AluSq SINE Alu 0 304 1 260 214 89 0 chr1 250458409 250458465 -31735199 - L2 LINE L2 -13 3300 3240 317 336 95 15 chr1 250458607 250458744 -31734920 - L2 LINE L2 0 3272 3125 264 403 77 14 chr1 250459070 250459561 -31734103 - L2 LINE L2 -2275 1039 518 375 294 27 20 chr1 250460636 250460782 -31732882 - MIR SINE MIR -65 197 51 1063 164 12 0 chr1 250460898 250461069 -31732595 - AluJb SINE Alu -7 305 133 200 189 41 41 chr1 250461078 250461200 -31732464 + (TTA)n Simple_repeat Simple_repeat 1 122 0 * 300 174 21 79 chr1 250461126 250461316 -31732348 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 * 357 174 64 23 chr1 250461260 250461432 -31732232 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 2148 108 10 0 chr1 250461928 250462235 -31731429 - AluSx SINE Alu -2 310 1 2333 93 0 10 chr1 250463352 250463663 -31730001 + AluSg SINE Alu 1 308 -2 2246 245 23 7 chr1 250464497 250465052 -31728612 + MLT1F1 LTR MaLR 1 564 -3 913 217 63 0 chr1 250465551 250465740 -31727924 - MER58A DNA MER1_type 0 224 24 825 226 33 17 chr1 250466642 250466823 -31726841 - MER20 DNA MER1_type -5 214 31 1961 164 7 79 chr1 250467483 250467575 -31726089 + MLT1B LTR MaLR 1 98 -292 2218 128 0 0 chr1 250467575 250467911 -31725753 - AluSx SINE Alu 0 312 1 1961 164 7 79 chr1 250467911 250467924 -31725740 + MLT1B LTR MaLR 98 110 -280 2272 109 0 7 chr1 250467924 250468226 -31725438 - AluSx SINE Alu -12 300 1 1961 164 7 79 chr1 250468226 250468539 -31725125 + MLT1B LTR MaLR 110 390 0 218 263 66 26 chr1 250468634 250468710 -31724954 - L2 LINE L2 -9 3263 3185 263 191 206 0 chr1 250468906 250468974 -31724690 + MER46C DNA MER2_type 79 160 -178 704 298 77 38 chr1 250521243 250521964 -31671700 + L1ME LINE L1 573 1303 -4826 1057 129 32 0 chr1 250521986 250522172 -31671492 - L1MA5 LINE L1 -7 6293 6102 1151 71 0 0 chr1 250522172 250522313 -31671351 - AluSc SINE Alu -12 297 157 4820 142 21 49 chr1 250522313 250522946 -31670718 - L1MA5 LINE L1 -186 6114 5465 1914 125 13 35 chr1 250522946 250523258 -31670406 - AluSq SINE Alu -2 311 7 4820 142 21 49 chr1 250523258 250524294 -31669370 - L1MA5 LINE L1 -835 5465 4473 1252 167 47 8 chr1 250524292 250524549 -31669115 + L1 LINE L1 4130 4396 -1750 * 481 303 8 6 chr1 250524564 250524767 -31668897 + L1ME LINE L1 1322 1622 -868 514 268 100 39 chr1 250525118 250525479 -31668185 + L1ME LINE L1 2106 2502 -3627 4895 63 6 0 chr1 250525479 250526109 -31667555 - L1PA7 LINE L1 -5 6149 5516 514 268 100 39 chr1 250526109 250526209 -31667455 + L1ME LINE L1 2502 2595 -3534 247 277 15 0 chr1 250526239 250526304 -31667360 + L1ME LINE L1 3751 3816 -2313 22 0 0 0 chr1 250526355 250526377 -31667287 + AT_rich Low_complexity Low_complexity 1 22 0 445 255 181 23 chr1 250526470 250526686 -31666978 + MIR SINE MIR 13 262 0 352 288 209 30 chr1 250527265 250527563 -31666101 + L1ME LINE L1 4718 4961 -1168 1486 199 14 11 chr1 250527563 250527844 -31665820 + AluJo SINE Alu 1 282 -30 352 288 209 30 chr1 250527844 250528083 -31665581 + L1ME LINE L1 4961 5366 -763 574 289 47 4 chr1 250528199 250528434 -31665230 + L1ME LINE L1 5487 5731 -373 312 171 57 16 chr1 250528434 250528557 -31665107 + (TA)n Simple_repeat Simple_repeat 2 129 0 1622 126 4 4 chr1 250528557 250528804 -31664860 + THE1C LTR MaLR 1 247 -128 27 0 0 0 chr1 250528914 250528941 -31664723 + AT_rich Low_complexity Low_complexity 1 27 0 2619 171 20 18 chr1 250528944 250529488 -31664176 - L1MA6 LINE L1 -7 6293 5749 453 325 51 51 chr1 250530129 250530366 -31663298 + MIR SINE MIR 23 259 -3 4564 159 45 11 chr1 250530575 250531407 -31662257 + MER6 DNA MER2_type 5 864 -1 1582 122 0 23 chr1 250531458 250531720 -31661944 - L1MA3 LINE L1 0 6305 6050 183 227 23 0 chr1 250531740 250531784 -31661880 + L2 LINE L2 3248 3292 -21 204 289 0 0 chr1 250532083 250532128 -31661536 + polypyrimidine Low_complexity Low_complexity 5 49 0 399 223 11 0 chr1 250532129 250532223 -31661441 - L1MB8 LINE L1 0 6178 6084 425 282 99 0 chr1 250533772 250533914 -31659750 + L2 LINE L2 3100 3255 -17 28 0 0 0 chr1 250533942 250533970 -31659694 + AT_rich Low_complexity Low_complexity 1 28 0 1440 194 119 36 chr1 250534836 250535249 -31658415 + MLT1C LTR MaLR 19 465 -2 365 289 0 0 chr1 250535266 250535349 -31658315 - L2 LINE L2 -8 3305 3223 1052 329 165 19 chr1 250535598 250536471 -31657193 - L2 LINE L2 -454 2860 1861 3774 44 15 6 chr1 250536994 250537473 -31656191 - L1PA7 LINE L1 -2 6152 5670 399 251 129 29 chr1 250538230 250538401 -31655263 - MIR SINE MIR -38 224 37 257 265 59 81 chr1 250538672 250538808 -31654856 + MIR SINE MIR 130 262 0 27 0 0 0 chr1 250538853 250538880 -31654784 + AT_rich Low_complexity Low_complexity 1 27 0 2343 80 33 0 chr1 250540992 250541291 -31652373 - AluSq SINE Alu -4 309 1 3236 176 24 75 chr1 250542254 250543038 -31650626 - L1MB7 LINE L1 0 6184 5465 2104 168 75 5 chr1 250543038 250543436 -31650228 + MSTB LTR MaLR 1 426 0 3236 176 24 75 chr1 250543436 250543517 -31650147 - L1MB7 LINE L1 -719 5465 5381 2419 211 63 2 chr1 250543661 250544142 -31649522 + MLT2B3 LTR ERVL 3 520 -34 828 34 17 8 chr1 250544142 250544259 -31649405 + (TCTA)n Simple_repeat Simple_repeat 2 119 0 2419 211 63 2 chr1 250544259 250544297 -31649367 + MLT2B3 LTR ERVL 520 554 0 1470 187 20 3 chr1 250544297 250544591 -31649073 + MLT1C-int LTR MaLR 1 299 -1436 399 41 0 0 chr1 250544592 250544641 -31649023 + (TG)n Simple_repeat Simple_repeat 2 50 0 2386 82 0 0 chr1 250544756 250545048 -31648616 - AluY SINE Alu -19 292 1 1110 246 62 0 chr1 250545302 250545591 -31648073 + MLT1C-int LTR MaLR 286 592 -1143 2550 225 102 53 chr1 250545753 250546491 -31647173 + MLT1C-int LTR MaLR 798 1658 -77 343 176 0 0 chr1 250546491 250546559 -31647105 - HERVL LTR ERVL -5582 72 5 781 187 45 35 chr1 250546566 250546603 -31647061 - MSTD LTR MaLR -2 394 359 2426 63 7 3 chr1 250546603 250546903 -31646761 + AluY SINE Alu 1 301 -10 781 187 45 35 chr1 250546903 250547063 -31646601 - MSTD LTR MaLR -37 359 195 371 136 0 0 chr1 250547084 250547143 -31646521 + MLT1C-int LTR MaLR 1664 1722 -13 802 187 99 11 chr1 250547167 250547349 -31646315 + MSTD LTR MaLR 3 200 -196 535 106 17 0 chr1 250547353 250547456 -31646208 + MSTC LTR MaLR 343 428 0 1340 207 4 4 chr1 250547461 250547736 -31645928 + HERVL-B3-B3 LTR ERVL 5 279 -5375 * 27437 163 50 9 chr1 250547734 250552769 -31640895 + HERVL-B3-B3 LTR ERVL 401 5638 -126 570 124 0 0 chr1 250552770 250552859 -31640805 + Ricksha DNA DNA 259 347 -2899 2682 176 7 48 chr1 250552859 250553437 -31640227 + MLT2B3 LTR ERVL 1 554 0 620 266 44 44 chr1 250554306 250554694 -31638970 + L1ME4a LINE L1 5576 5963 -158 233 260 0 0 chr1 250554695 250554745 -31638919 + (TA)n Simple_repeat Simple_repeat 1 50 0 3574 212 21 23 chr1 250555480 250556493 -31637171 + L1M4 LINE L1 4310 5320 -826 585 272 25 25 chr1 250556849 250557011 -31636653 + MIR SINE MIR 9 170 -92 1391 154 158 0 chr1 250557633 250557879 -31635785 - AluJo SINE Alu -15 287 3 186 304 76 25 chr1 250560186 250560265 -31633399 + MIR3 SINE MIR 117 199 -9 1993 110 29 0 chr1 250560902 250561205 -31632459 + AluSg SINE Alu 1 311 0 573 226 80 47 chr1 250562025 250562242 -31631422 + MIR SINE MIR 24 249 -13 2078 109 20 23 chr1 250562726 250563030 -31630634 + AluSx SINE Alu 1 303 -9 351 174 11 217 chr1 250563948 250564132 -31629532 + MIR SINE MIR 24 169 -93 211 232 62 45 chr1 250564168 250564280 -31629384 + MIR SINE MIR 147 260 -2 373 301 219 0 chr1 250564561 250564757 -31628907 - MIR SINE MIR -4 258 20 331 273 91 18 chr1 250565325 250565435 -31628229 - L2 LINE L2 -15 3257 3140 238 159 23 0 chr1 250565614 250565658 -31628006 + MER5A DNA MER1_type 1 45 -144 * 278 229 16 0 chr1 250565652 250565713 -31627951 - L2 LINE L2 -27 3286 3225 395 351 48 5 chr1 250565718 250565882 -31627782 + MIR3 SINE MIR 34 203 -5 255 311 56 0 chr1 250565926 250566016 -31627648 - L2 LINE L2 -21 3251 3157 2267 128 120 5 chr1 250566068 250566452 -31627212 - MSTA LTR MaLR 0 428 1 248 173 0 107 chr1 250566452 250566527 -31627137 - MSTA-int LTR MaLR 0 1651 1585 5440 74 80 13 chr1 250566883 250567029 -31626635 + L1PA10 LINE L1 5285 5420 -748 1631 99 0 0 chr1 250567029 250567242 -31626422 + AluY SINE Alu 99 311 0 5440 74 80 13 chr1 250567242 250567920 -31625744 + L1PA10 LINE L1 5420 6164 -4 1247 132 69 5 chr1 250568805 250569009 -31624655 - Tigger3(Golem) DNA MER2_type 0 3038 2822 2261 109 0 3 chr1 250569116 250569420 -31624244 + AluSg1 SINE Alu 1 303 -6 7650 184 24 7 chr1 250569426 250570873 -31622791 - MSTA-int LTR MaLR -179 1472 1 2193 139 108 5 chr1 250570873 250571261 -31622403 - MSTA LTR MaLR 0 428 1 253 343 0 0 chr1 250572127 250572194 -31621470 - MIR SINE MIR -105 103 37 240 283 195 9 chr1 250573000 250573113 -31620551 - L2 LINE L2 -9 3304 3171 299 216 21 21 chr1 250573441 250573538 -31620126 + Charlie2 DNA MER1_type 2677 2773 -89 523 80 57 0 chr1 250573585 250573673 -31619991 - L1MB3 LINE L1 -31 6152 6060 185 279 135 27 chr1 250574783 250574894 -31618770 - L3 LINE CR1 -614 963 841 423 258 68 15 chr1 250575083 250575215 -31618449 + MIR SINE MIR 54 192 -70 252 329 0 24 chr1 250575382 250575467 -31618197 + L2 LINE L2 3231 3313 0 248 333 20 20 chr1 250575514 250575616 -31618048 - L2 LINE L2 -213 3059 2958 278 391 7 14 chr1 250575776 250575914 -31617750 + L2 LINE L2 3145 3281 -32 291 273 26 0 chr1 250576348 250576425 -31617239 + MIR SINE MIR 69 147 -61 259 303 61 23 chr1 250578314 250578446 -31615218 + MIR3 SINE MIR 10 146 -62 414 308 90 55 chr1 250579532 250579689 -31613975 + L2 LINE L2 2934 3084 -229 324 0 0 0 chr1 250579689 250579725 -31613939 + (CA)n Simple_repeat Simple_repeat 1 36 0 414 308 90 55 chr1 250579725 250579934 -31613730 + L2 LINE L2 3084 3313 0 1637 187 7 20 chr1 250580096 250580396 -31613268 - AluJo SINE Alu -5 307 12 516 256 82 63 chr1 250580847 250581054 -31612610 + MLT1H LTR MaLR 73 283 -266 292 212 15 0 chr1 250581431 250581497 -31612167 + MLT1H LTR MaLR 483 549 0 504 248 94 37 chr1 250581932 250582170 -31611494 - MIR SINE MIR 0 262 3 216 255 20 0 chr1 250582813 250582864 -31610800 + MIR SINE MIR 206 257 -5 386 208 94 19 chr1 250584551 250584657 -31609007 + MIR SINE MIR 81 194 -68 312 270 211 24 chr1 250584735 250585093 -31608571 + MIR SINE MIR 5 259 -3 2113 131 49 26 chr1 250585391 250585818 -31607846 + L1MA4A LINE L1 5856 6292 -11 293 270 0 66 chr1 250585823 250585899 -31607765 - HAL1b LINE L1 -30 1318 1253 1931 70 0 0 chr1 250585899 250586142 -31607522 - AluY SINE Alu -11 300 58 293 270 0 66 chr1 250586142 250586202 -31607462 - HAL1b LINE L1 -95 1253 1191 931 291 81 21 chr1 250586330 250586752 -31606912 + MLT1J2 LTR MaLR 2 448 -2 188 277 12 0 chr1 250586769 250586852 -31606812 + CT-rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr1 250587029 250587050 -31606614 + AT_rich Low_complexity Low_complexity 1 21 0 507 325 109 53 chr1 250587463 250588011 -31605653 - HAL1 LINE L1 -737 1770 1192 234 0 0 0 chr1 250588105 250588131 -31605533 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr1 250590015 250590036 -31603628 + AT_rich Low_complexity Low_complexity 1 21 0 188 247 237 31 chr1 250590638 250590735 -31602929 - L2 LINE L2 0 3313 3197 307 343 0 58 chr1 250590809 250590946 -31602718 - L3 LINE CR1 -104 1473 1345 371 293 114 18 chr1 250590948 250591115 -31602549 + MER5B DNA MER1_type 2 173 -5 198 176 0 0 chr1 250591118 250591152 -31602512 - MER5B DNA MER1_type -143 35 2 921 273 197 45 chr1 250591165 250591765 -31601899 - L3 LINE CR1 -237 1340 650 320 209 12 0 chr1 250591828 250591914 -31601750 + GA-rich Low_complexity Low_complexity 2 88 0 22 0 0 0 chr1 250592596 250592618 -31601046 + AT_rich Low_complexity Low_complexity 1 22 0 1332 287 111 27 chr1 250592646 250593509 -31600155 + L2 LINE L2 2213 3159 -154 517 73 48 24 chr1 250593509 250593633 -31600031 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 1711 172 41 22 chr1 250593633 250593999 -31599665 + THE1C LTR MaLR 3 375 0 186 103 0 0 chr1 250594014 250594043 -31599621 + (TAGG)n Simple_repeat Simple_repeat 2 30 0 217 214 0 0 chr1 250594100 250594142 -31599522 - MER5B DNA MER1_type -109 69 28 791 237 119 9 chr1 250594389 250594608 -31599056 + MIR SINE MIR 19 261 -1 334 318 0 28 chr1 250595872 250595979 -31597685 - MIR3 SINE MIR -3 205 102 2166 155 21 12 chr1 250596461 250596597 -31597067 - MER95 LTR ERV 0 431 298 1894 119 4 25 chr1 250596597 250596901 -31596763 - AluSg SINE Alu 0 308 11 2166 155 21 12 chr1 250596901 250597182 -31596482 - MER95 LTR ERV -133 298 9 6036 30 0 0 chr1 250597194 250597940 -31595724 - L1PA3 LINE L1 -1848 4298 3553 8822 28 1 0 chr1 250597941 250599769 -31593895 + L1PA3 LINE L1 4326 6159 0 377 281 104 102 chr1 250600176 250600491 -31593173 + MLT1J LTR MaLR 23 341 -170 1594 124 0 0 chr1 250600491 250600709 -31592955 + AluSg/x SINE Alu 89 306 -4 377 281 104 102 chr1 250600709 250600874 -31592790 + MLT1J LTR MaLR 341 504 -7 569 311 53 10 chr1 250601339 250601554 -31592110 + MIR SINE MIR 37 260 -2 225 0 0 0 chr1 250602561 250602581 -31591083 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr1 250602581 250602606 -31591058 + (CA)n Simple_repeat Simple_repeat 2 26 0 201 333 0 0 chr1 250602728 250602800 -31590864 - MIR SINE MIR -147 115 44 189 313 143 9 chr1 250602968 250603080 -31590584 + MIR SINE MIR 13 139 -123 1270 202 75 116 chr1 250603179 250603713 -31589951 + MLT1F1 LTR MaLR 56 567 0 809 259 98 100 chr1 250605322 250606004 -31587660 + L1MC/D LINE L1 4553 5233 -913 502 286 123 37 chr1 250606024 250606513 -31587151 + L1MC/D LINE L1 5255 5785 -2023 290 266 32 71 chr1 250606526 250606680 -31586984 + L1MC/D LINE L1 5677 5824 -1984 1994 91 35 14 chr1 250606721 250607007 -31586657 - AluSg SINE Alu -18 292 1 232 273 37 19 chr1 250607079 250607240 -31586424 + (TA)n Simple_repeat Simple_repeat 1 164 0 216 179 0 0 chr1 250607570 250607609 -31586055 + (TATG)n Simple_repeat Simple_repeat 3 41 0 23 78 0 0 chr1 250607829 250607880 -31585784 + AT_rich Low_complexity Low_complexity 1 51 0 434 278 93 42 chr1 250608132 250608517 -31585147 - L1ME4a LINE L1 -185 5936 5532 312 314 44 22 chr1 250609509 250609646 -31584018 + MIR SINE MIR 15 154 -108 1867 191 5 28 chr1 250609675 250609910 -31583754 + MLT1B LTR MaLR 2 241 -149 402 77 0 231 chr1 250609910 250610014 -31583650 + MADE1 DNA Mariner 1 80 0 1867 191 5 28 chr1 250610014 250610113 -31583551 + MLT1B LTR MaLR 241 328 -62 2297 97 0 7 chr1 250610113 250610412 -31583252 + AluSp SINE Alu 2 298 -15 1867 191 5 28 chr1 250610412 250610474 -31583190 + MLT1B LTR MaLR 328 390 0 186 152 30 0 chr1 250610474 250610507 -31583157 + L2 LINE L2 3264 3297 -16 223 374 38 8 chr1 250610958 250611089 -31582575 - MIR SINE MIR -108 154 20 453 243 10 19 chr1 250611455 250611558 -31582106 - L2 LINE L2 -13 3300 3199 6924 183 118 16 chr1 250612203 250613791 -31579873 + MER52A LTR ERV1 6 1755 0 1535 297 45 25 chr1 250614442 250614971 -31578693 + MER115 DNA AcHobo 134 673 -20 401 305 16 21 chr1 250615002 250615189 -31578475 - MER5A DNA MER1_type -1 188 3 794 268 28 24 chr1 250615260 250615551 -31578113 + MARNA DNA Mariner 14 305 -281 1414 295 85 51 chr1 250615595 250616531 -31577133 + HAL1 LINE L1 25 1004 -1503 1786 134 79 17 chr1 250616531 250616823 -31576841 + AluSx SINE Alu 1 310 -2 1414 295 85 51 chr1 250616823 250616966 -31576698 + HAL1 LINE L1 1004 1141 -1366 213 188 0 0 chr1 250616970 250617002 -31576662 - L2 LINE L2 -374 2939 2908 * 682 277 186 4 chr1 250617001 250617340 -31576324 - L2 LINE L2 -978 2336 1889 1866 247 71 67 chr1 250617349 250618385 -31575279 + HAL1 LINE L1 1358 2398 -109 2217 124 7 0 chr1 250618684 250618990 -31574674 + AluSx SINE Alu 1 308 -4 28883 102 16 12 chr1 250619017 250621351 -31572313 + L1PA7 LINE L1 8 2332 -4137 246 32 0 0 chr1 250621351 250621382 -31572282 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 28883 102 16 12 chr1 250621382 250625476 -31568188 + L1PA7 LINE L1 2332 6456 -13 378 0 0 0 chr1 250626890 250626932 -31566732 + (TG)n Simple_repeat Simple_repeat 2 43 0 1573 192 31 0 chr1 250626936 250627196 -31566468 - AluJb SINE Alu -44 268 1 366 203 285 8 chr1 250627531 250627654 -31566010 - MLT1L LTR MaLR -371 244 88 1671 149 63 15 chr1 250627976 250628245 -31565419 - AluSx SINE Alu -30 282 1 714 220 29 1 chr1 250629161 250629467 -31564197 + LTR40a LTR ERVL 1 348 -114 5214 170 26 3 chr1 250629819 250630830 -31562834 + L1MC1 LINE L1 5295 6331 -2 29 70 0 0 chr1 250632961 250633018 -31560646 + AT_rich Low_complexity Low_complexity 1 57 0 198 0 0 0 chr1 250634567 250634589 -31559075 + (TG)n Simple_repeat Simple_repeat 2 23 0 274 228 18 0 chr1 250634601 250634658 -31559006 + GA-rich Low_complexity Low_complexity 3 60 0 24 0 0 0 chr1 250635890 250635914 -31557750 + AT_rich Low_complexity Low_complexity 1 24 0 287 316 49 31 chr1 250636103 250636262 -31557402 + MIR SINE MIR 25 183 -77 223 337 81 0 chr1 250636450 250636536 -31557128 - L2 LINE L2 -758 2556 2464 359 283 48 14 chr1 250636613 250636758 -31556906 - L2 LINE L2 0 3313 3164 806 147 0 16 chr1 250637250 250637379 -31556285 + FLAM_C SINE Alu 1 127 -16 251 163 0 0 chr1 250638399 250638442 -31555222 + L2 LINE L2 3271 3313 0 310 325 78 0 chr1 250638945 250639099 -31554565 + L2 LINE L2 2195 2360 -954 359 205 60 0 chr1 250639139 250639222 -31554442 + L1MB7 LINE L1 6000 6087 -97 238 208 0 0 chr1 250639217 250639265 -31554399 + L1ME1 LINE L1 6119 6166 0 * 182 340 0 0 chr1 250639362 250639415 -31554249 + L2 LINE L2 3187 3239 -33 202 363 48 42 chr1 250639691 250639859 -31553805 + L2 LINE L2 2619 2787 -527 1744 161 45 7 chr1 250640626 250640912 -31552752 + AluJb SINE Alu 2 298 -14 244 217 17 33 chr1 250641298 250641358 -31552306 - L2 LINE L2 0 3272 3214 531 0 0 0 chr1 250643864 250643923 -31549741 + (TTTC)n Simple_repeat Simple_repeat 2 60 0 1845 172 29 9 chr1 250644059 250644407 -31549257 - THE1A LTR MaLR 0 355 1 194 295 131 0 chr1 250644457 250644518 -31549146 - L2 LINE L2 -39 3274 3206 327 150 0 0 chr1 250645499 250645559 -31548105 + (TG)n Simple_repeat Simple_repeat 1 60 0 312 188 0 0 chr1 250646348 250646412 -31547252 + (CA)n Simple_repeat Simple_repeat 1 64 0 333 255 116 42 chr1 250648677 250648893 -31544771 + L1ME4a LINE L1 5735 5966 -155 720 248 160 19 chr1 250649600 250649919 -31543745 - L1MC/D LINE L1 -2031 5777 5414 307 283 151 7 chr1 250651809 250651961 -31541703 + MIR SINE MIR 89 262 0 368 233 14 0 chr1 250651966 250652039 -31541625 - MIR SINE MIR -105 157 84 2388 48 0 7 chr1 250652436 250652727 -31540937 + AluY SINE Alu 1 289 -22 198 200 0 25 chr1 250653942 250653982 -31539682 + L2 LINE L2 3219 3257 -15 25 0 0 0 chr1 250654488 250654513 -31539151 + AT_rich Low_complexity Low_complexity 1 25 0 248 387 43 47 chr1 250655789 250656042 -31537622 + L2 LINE L2 3016 3267 -5 486 244 69 15 chr1 250657018 250657149 -31536515 + MIR SINE MIR 64 201 -61 704 262 124 9 chr1 250657291 250657516 -31536148 + MIR SINE MIR 2 252 -10 286 377 74 17 chr1 250657840 250658015 -31535649 - L2 LINE L2 -400 2914 2730 1056 223 5 5 chr1 250658019 250658234 -31535430 + AluJo SINE Alu 7 221 -91 27 29 0 0 chr1 250659681 250659715 -31533949 + AT_rich Low_complexity Low_complexity 1 34 0 469 326 30 47 chr1 250660015 250660178 -31533486 + HAL1b LINE L1 83 247 -1101 2331 119 14 6 chr1 250660178 250660530 -31533134 + THE1A LTR MaLR 1 355 0 469 326 30 47 chr1 250660530 250660903 -31532761 + HAL1b LINE L1 247 610 -738 1920 125 33 20 chr1 250661046 250661351 -31532313 + AluSx SINE Alu 1 309 -3 342 317 22 22 chr1 250663155 250663335 -31530329 + L1M4 LINE L1 2650 2829 -3317 2247 87 3 0 chr1 250663363 250663649 -31530015 + AluSg SINE Alu 1 287 -23 2215 103 3 0 chr1 250663678 250663980 -31529684 + AluSq SINE Alu 1 303 -10 403 79 95 0 chr1 250664267 250664330 -31529334 - AluS SINE Alu -239 73 5 4338 146 73 9 chr1 250665065 250665841 -31527823 + LTR1B LTR ERV1 1 826 0 31 64 0 0 chr1 250666300 250666347 -31527317 + AT_rich Low_complexity Low_complexity 1 47 0 190 227 0 23 chr1 250666518 250666562 -31527102 - L2 LINE L2 -834 2480 2438 29 0 0 0 chr1 250666590 250666619 -31527045 + AT_rich Low_complexity Low_complexity 1 29 0 704 117 25 0 chr1 250666621 250666741 -31526923 - FLAM_C SINE Alu -20 123 1 442 293 66 6 chr1 250667078 250667245 -31526419 - MIR SINE MIR -10 252 76 565 329 64 5 chr1 250667581 250667958 -31525706 + L1M4 LINE L1 4747 5145 -1001 225 0 0 0 chr1 250667977 250668002 -31525662 + (T)n Simple_repeat Simple_repeat 1 25 0 15959 142 71 17 chr1 250668204 250671330 -31522334 + L1MA2 LINE L1 671 3965 -3600 7123 95 17 22 chr1 250671325 250672565 -31521099 + L1MA2 LINE L1 6487 7722 -1 * 697 222 38 38 chr1 250672579 250672791 -31520873 + HAL1 LINE L1 2269 2480 -27 1758 175 3 28 chr1 250672835 250673155 -31520509 + AluJo SINE Alu 1 312 0 643 300 5 26 chr1 250673246 250673436 -31520228 - MIR SINE MIR -74 188 3 433 155 30 131 chr1 250673590 250673915 -31519749 - L1ME1 LINE L1 -123 6043 5680 1462 213 7 20 chr1 250673916 250674212 -31519452 - AluJb SINE Alu -9 303 12 366 143 0 0 chr1 250674233 250674289 -31519375 - Alu SINE Alu -12 290 235 284 211 0 0 chr1 250674315 250674377 -31519287 - L1ME1 LINE L1 -552 5614 5561 1177 196 39 5 chr1 250674393 250674787 -31518877 - L1ME1 LINE L1 -743 5403 5072 1639 227 21 72 chr1 250674819 250675304 -31518360 + MLT2B1 LTR ERVL 21 480 -40 388 286 0 11 chr1 250675305 250675487 -31518177 + (TA)n Simple_repeat Simple_repeat 1 180 0 301 207 23 23 chr1 250675492 250675579 -31518085 + L1MC4 LINE L1 6617 6703 -1339 441 170 40 0 chr1 250675617 250675717 -31517947 - L1ME1 LINE L1 -1071 5075 4972 2384 190 58 0 chr1 250675717 250676164 -31517500 - MLT2B1 LTR ERVL -47 473 1 449 264 28 61 chr1 250676166 250676378 -31517286 - L1ME1 LINE L1 -1167 4979 4775 1634 112 66 0 chr1 250676405 250676647 -31517017 - MER7A DNA MER2_type -90 256 1 1154 216 32 4 chr1 250676647 250676925 -31516739 - L1ME1 LINE L1 -1371 4775 4490 588 149 0 0 chr1 250677130 250677224 -31516440 - AluJ SINE Alu -6 306 213 963 154 0 0 chr1 250677225 250677368 -31516296 - AluJ SINE Alu -169 143 1 29 90 0 0 chr1 250681373 250681451 -31512213 + AT_rich Low_complexity Low_complexity 1 78 0 1276 238 0 31 chr1 250681464 250681758 -31511906 - AluJo SINE Alu -27 285 1 216 0 0 0 chr1 250681972 250681996 -31511668 + (A)n Simple_repeat Simple_repeat 1 24 0 5948 129 15 23 chr1 250683797 250685236 -31508428 - SVA Other Other -911 1383 32 29 47 0 0 chr1 250685297 250685340 -31508324 + AT_rich Low_complexity Low_complexity 1 43 0 2681 124 2 139 chr1 250687042 250687583 -31506081 + MER1A DNA MER1_type 63 529 0 261 0 0 0 chr1 250687892 250687921 -31505743 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2522 166 34 2 chr1 250689824 250690265 -31503399 + MSTB2 LTR MaLR 1 455 -2 527 283 169 5 chr1 250690811 250690995 -31502669 + MIR SINE MIR 8 221 -41 273 29 0 0 chr1 250691620 250691654 -31502010 + (CA)n Simple_repeat Simple_repeat 2 35 0 245 311 148 16 chr1 250691813 250691935 -31501729 + L2 LINE L2 3134 3271 -1 210 283 87 54 chr1 250692696 250692788 -31500876 + L2 LINE L2 3145 3239 -33 500 271 108 20 chr1 250692806 250693009 -31500655 - MIR SINE MIR -6 256 36 474 340 127 30 chr1 250693006 250693409 -31500255 - L2 LINE L2 -1 3271 2830 * 1991 133 0 37 chr1 250693465 250693789 -31499875 - AluJb SINE Alu 0 312 1 553 136 29 0 chr1 250693820 250693923 -31499741 - Charlie1 DNA MER1_type -33 2728 2623 816 223 30 0 chr1 250693941 250694107 -31499557 - Charlie1 DNA MER1_type -2590 171 1 221 189 0 0 chr1 250694116 250694153 -31499511 + MER5A DNA MER1_type 3 39 -150 * 223 387 81 0 chr1 250694125 250694236 -31499428 + L2 LINE L2 3133 3252 -20 2162 135 0 0 chr1 250694514 250694825 -31498839 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr1 250695009 250695036 -31498628 + AT_rich Low_complexity Low_complexity 1 27 0 33 43 0 0 chr1 250695276 250695323 -31498341 + AT_rich Low_complexity Low_complexity 1 47 0 258 349 87 0 chr1 250695374 250695500 -31498164 - MIR SINE MIR -122 140 4 203 292 0 0 chr1 250695566 250695614 -31498050 - L2 LINE L2 -749 2565 2518 267 31 0 0 chr1 250696087 250696119 -31497545 + (GA)n Simple_repeat Simple_repeat 2 33 0 1538 85 20 0 chr1 250696161 250696361 -31497303 - AluSc SINE Alu -105 204 1 237 109 109 0 chr1 250696624 250696670 -31496994 + L2 LINE L2 3262 3312 -1 689 221 32 6 chr1 250696876 250697034 -31496630 - MER20 DNA MER1_type 0 219 58 201 74 0 0 chr1 250697291 250697318 -31496346 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 205 390 51 8 chr1 250698777 250698895 -31494769 + MIR SINE MIR 26 148 -114 525 256 33 8 chr1 250698936 250699057 -31494607 + MIR SINE MIR 69 192 -70 2360 90 3 0 chr1 250699981 250700293 -31493371 + AluSp SINE Alu 1 313 0 2488 78 3 0 chr1 250702038 250702347 -31491317 + AluSp SINE Alu 1 310 -3 185 271 57 71 chr1 250703110 250703180 -31490484 - L2 LINE L2 -212 3060 2992 2428 74 3 0 chr1 250703485 250703784 -31489880 - AluSp SINE Alu -13 300 1 331 258 186 93 chr1 250704097 250704273 -31489391 + L1ME4a LINE L1 5546 5704 -417 2399 83 0 3 chr1 250704273 250704585 -31489079 + AluY SINE Alu 1 311 0 331 258 186 93 chr1 250704585 250704741 -31488923 + L1ME4a LINE L1 5704 5909 -212 880 281 133 53 chr1 250704742 250705542 -31488122 - L2 LINE L2 0 3313 2425 2008 137 0 0 chr1 250705851 250706143 -31487521 + AluSq SINE Alu 1 292 -21 233 288 72 36 chr1 250706576 250706687 -31486977 + MIR SINE MIR 91 205 -57 2147 87 7 3 chr1 250706704 250706990 -31486674 - AluSq SINE Alu -26 287 1 1043 297 111 81 chr1 250707249 250708175 -31485489 + L3 LINE CR1 249 1202 -375 460 111 37 12 chr1 250708182 250708263 -31485401 + AluJo SINE Alu 62 144 -168 228 122 0 0 chr1 250708263 250708304 -31485360 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 908 147 0 51 chr1 250708309 250708465 -31485199 + AluSq SINE Alu 122 269 -44 180 97 0 0 chr1 250708475 250708506 -31485158 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 704 125 0 8 chr1 250708506 250708626 -31485038 + (GGAA)n Simple_repeat Simple_repeat 3 121 0 328 224 71 100 chr1 250708747 250708917 -31484747 + L3 LINE CR1 1214 1378 -199 208 320 10 40 chr1 250709141 250709241 -31484423 - MIR SINE MIR -130 132 36 444 302 34 20 chr1 250709252 250709401 -31484263 - MER5B DNA MER1_type -7 171 21 543 266 35 65 chr1 250711350 250711579 -31482085 - MIR SINE MIR -10 252 31 274 347 48 16 chr1 250711858 250711982 -31481682 - MIR SINE MIR -61 147 20 207 268 0 0 chr1 250712807 250712863 -31480801 + (CATA)n Simple_repeat Simple_repeat 1 56 0 590 255 60 22 chr1 250714066 250714250 -31479414 + MIR SINE MIR 2 192 -70 2205 95 3 0 chr1 250714485 250714795 -31478869 - AluSp SINE Alu 0 311 1 180 0 0 0 chr1 250714940 250714960 -31478704 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1490 163 3 78 chr1 250714991 250715298 -31478366 - AluJo SINE Alu -26 286 3 322 192 0 0 chr1 250716658 250716710 -31476954 + MER3 DNA MER1_type 42 93 -116 357 219 0 105 chr1 250717433 250717496 -31476168 + MER5A DNA MER1_type 13 62 -127 2634 14 0 3 chr1 250717496 250717789 -31475875 + AluYb8 SINE Alu 22 313 -5 357 219 0 105 chr1 250717789 250717830 -31475834 + MER5A DNA MER1_type 62 106 -83 32 75 0 0 chr1 250718469 250718536 -31475128 + AT_rich Low_complexity Low_complexity 1 67 0 2174 92 0 10 chr1 250718574 250718868 -31474796 + AluSg SINE Alu 1 291 -19 45 26 0 39 chr1 250719221 250719299 -31474365 + AT_rich Low_complexity Low_complexity 1 75 0 680 276 69 20 chr1 250719553 250719799 -31473865 - MIR SINE MIR 0 262 5 2000 98 0 79 chr1 250720617 250720934 -31472730 + AluSg SINE Alu 1 292 -18 180 0 0 0 chr1 250722550 250722570 -31471094 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 420 276 111 39 chr1 250722618 250722799 -31470865 + MIR SINE MIR 14 207 -55 31 58 0 0 chr1 250723132 250723184 -31470480 + AT_rich Low_complexity Low_complexity 1 52 0 230 79 0 26 chr1 250723244 250723282 -31470382 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 201 108 0 0 chr1 250724466 250724503 -31469161 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1938 131 7 4 chr1 250724504 250724779 -31468885 - AluSx SINE Alu -32 280 5 226 265 124 48 chr1 250727441 250727555 -31466109 - MIR SINE MIR -60 148 28 296 369 48 2 chr1 250727774 250727964 -31465700 - MIR SINE MIR -46 216 17 12391 99 16 25 chr1 250728015 250729935 -31463729 + L1PA7 LINE L1 2 1926 -4535 20405 84 3 0 chr1 250729951 250733599 -31460065 + L1PA7 LINE L1 2789 6466 -3 379 308 199 19 chr1 250733760 250734026 -31459638 - L1MEd LINE L1 -3783 2346 2076 544 260 93 48 chr1 250734324 250734912 -31458752 - L1MEd LINE L1 -4703 1576 954 566 298 225 24 chr1 250735044 250735634 -31458030 - L1MEd LINE L1 -5409 710 2 485 338 123 14 chr1 250738489 250738708 -31454956 + MIR SINE MIR 20 262 0 2104 98 0 33 chr1 250738917 250739223 -31454441 + AluSx SINE Alu 1 296 -16 2125 110 0 7 chr1 250739741 250740041 -31453623 - AluSx SINE Alu -14 298 1 1594 191 10 19 chr1 250740697 250741006 -31452658 - AluJb SINE Alu -6 306 1 228 35 0 0 chr1 250741202 250741231 -31452433 + (CA)n Simple_repeat Simple_repeat 2 30 0 455 285 178 15 chr1 250741563 250741833 -31451831 + Charlie2 DNA MER1_type 12 325 -2457 1991 119 3 17 chr1 250741905 250742239 -31451425 - AluSx SINE Alu 0 330 1 754 219 190 18 chr1 250742258 250742537 -31451127 + Charlie2 DNA MER1_type 1964 2290 -572 28 0 0 0 chr1 250742566 250742594 -31451070 + AT_rich Low_complexity Low_complexity 1 28 0 673 237 42 83 chr1 250742594 250742931 -31450733 + Charlie2 DNA MER1_type 2540 2862 0 226 248 38 48 chr1 250742954 250743059 -31450605 - MLT1J LTR MaLR -28 483 380 275 311 44 11 chr1 250743428 250743518 -31450146 - MIR3 SINE MIR -7 201 109 1677 150 0 4 chr1 250743732 250743992 -31449672 - AluSx SINE Alu -53 259 1 27 29 0 0 chr1 250744355 250744389 -31449275 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1 250745423 250745444 -31448220 + AT_rich Low_complexity Low_complexity 1 21 0 334 303 83 8 chr1 250745471 250745603 -31448061 - MIR SINE MIR -74 188 47 2412 42 3 29 chr1 250746724 250747035 -31446629 - AluY SINE Alu -8 303 1 2005 114 27 0 chr1 250747035 250747333 -31446331 - AluSg SINE Alu -4 306 1 406 280 101 68 chr1 250747622 250748165 -31445499 - HAL1 LINE L1 -845 1662 1088 2223 103 0 0 chr1 250748165 250748471 -31445193 - AluSx SINE Alu 0 309 4 406 280 101 68 chr1 250748471 250748629 -31445035 - HAL1 LINE L1 -1419 1088 937 237 250 0 0 chr1 250748668 250748720 -31444944 - L2 LINE L2 -5 3308 3257 1951 133 48 0 chr1 250748917 250749211 -31444453 - AluSx SINE Alu -4 308 1 1206 127 6 0 chr1 250749724 250749905 -31443759 + AluSq SINE Alu 132 313 0 1702 136 24 42 chr1 250751144 250751315 -31442349 - AluJo SINE Alu -30 282 116 189 0 0 0 chr1 250751315 250751336 -31442328 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1702 136 24 42 chr1 250751336 250751451 -31442213 - AluJo SINE Alu -196 116 1 186 141 141 42 chr1 250754527 250754598 -31439066 - L3b LINE CR1 -398 1185 1108 1520 207 11 4 chr1 250755639 250755919 -31437745 + AluJo SINE Alu 1 282 -30 189 349 12 24 chr1 250757128 250757211 -31436453 + MER5A DNA MER1_type 108 189 0 1987 150 3 10 chr1 250757680 250757993 -31435671 - AluSx SINE Alu -1 311 1 491 248 31 16 chr1 250758060 250758189 -31435475 + MER104 DNA Tc2 50 180 0 2472 82 0 0 chr1 250758206 250758512 -31435152 - AluSp SINE Alu -7 306 1 228 217 17 50 chr1 250761463 250761523 -31432141 - L3 LINE CR1 -2 1575 1518 2251 112 0 0 chr1 250763806 250764118 -31429546 + AluSx SINE Alu 1 312 0 180 0 0 0 chr1 250765708 250765728 -31427936 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 420 276 111 39 chr1 250765776 250765957 -31427707 + MIR SINE MIR 14 207 -55 31 58 0 0 chr1 250766290 250766342 -31427322 + AT_rich Low_complexity Low_complexity 1 52 0 230 79 0 26 chr1 250766402 250766440 -31427224 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 312 94 0 0 chr1 250767623 250767676 -31425988 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1938 131 7 4 chr1 250767677 250767952 -31425712 - AluSx SINE Alu -32 280 5 241 269 122 46 chr1 250770614 250770728 -31422936 - MIR SINE MIR -60 148 28 354 355 61 5 chr1 250770947 250771137 -31422527 - MIR SINE MIR -46 216 17 12498 99 17 22 chr1 250771188 250773103 -31420561 + L1PA7 LINE L1 2 1926 -4535 20408 82 3 0 chr1 250773119 250776762 -31416902 + L1PA7 LINE L1 2789 6466 -3 357 338 78 0 chr1 250776994 250777198 -31416466 - L1MEd LINE L1 -3890 2239 2020 544 275 90 44 chr1 250777487 250778075 -31415589 - L1MEd LINE L1 -868 1622 954 656 292 227 17 chr1 250778204 250778790 -31414874 - L1MEd LINE L1 -5409 710 2 497 333 123 14 chr1 250781644 250781863 -31411801 + MIR SINE MIR 20 262 0 2289 101 0 16 chr1 250782072 250782379 -31411285 + AluSq SINE Alu 1 302 -11 27 0 0 0 chr1 250784905 250784932 -31408732 + AT_rich Low_complexity Low_complexity 1 27 0 1462 192 61 17 chr1 250785489 250785896 -31407768 + LTR37A LTR ERV1 2 426 0 331 261 72 51 chr1 250785916 250786054 -31407610 + HAL1 LINE L1 425 565 -1942 240 257 86 0 chr1 250786076 250786181 -31407483 + MLT1L LTR MaLR 477 590 -25 23 33 0 0 chr1 250786549 250786579 -31407085 + AT_rich Low_complexity Low_complexity 1 30 0 211 191 48 0 chr1 250787904 250787967 -31405697 + A-rich Low_complexity Low_complexity 2 67 0 264 264 27 40 chr1 250788750 250788898 -31404766 - L1MEd LINE L1 -3842 2287 2142 35 0 0 0 chr1 250788898 250788933 -31404731 + AT_rich Low_complexity Low_complexity 1 35 0 1302 179 71 29 chr1 250788936 250789216 -31404448 - AluJo SINE Alu -10 292 1 669 144 0 18 chr1 250789337 250789448 -31404216 - FLAM_C SINE Alu -9 134 26 1871 144 3 0 chr1 250789821 250790112 -31403552 + AluSq SINE Alu 5 296 -17 510 261 101 46 chr1 250790289 250790860 -31402804 - L1MEd LINE L1 -4610 1519 986 50 42 0 0 chr1 250791688 250791759 -31401905 + AT_rich Low_complexity Low_complexity 1 71 0 199 122 0 49 chr1 250792799 250792840 -31400824 + MIR SINE MIR 41 79 -129 710 259 42 36 chr1 250792849 250793042 -31400622 + MIR SINE MIR 48 241 -21 478 306 229 3 chr1 250793317 250793601 -31400063 + L2 LINE L2 2550 2897 -417 293 260 14 14 chr1 250793699 250793772 -31399892 + L2 LINE L2 3200 3272 0 22 0 0 0 chr1 250794200 250794222 -31399442 + AT_rich Low_complexity Low_complexity 1 22 0 2234 93 0 17 chr1 250794697 250794997 -31398667 + AluSx SINE Alu 1 295 -17 3053 199 37 23 chr1 250796440 250796689 -31396975 - MER82 DNA MER2_type 0 653 409 207 0 0 0 chr1 250796689 250796712 -31396952 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3053 199 37 23 chr1 250796712 250797106 -31396558 - MER82 DNA MER2_type -244 409 1 213 308 131 46 chr1 250799499 250799629 -31394035 - MIR SINE MIR -34 228 88 21 0 0 0 chr1 250799975 250799996 -31393668 + AT_rich Low_complexity Low_complexity 1 21 0 567 266 184 70 chr1 250800003 250800765 -31392899 - HAL1 LINE L1 -4 2503 1655 296 263 66 15 chr1 250800987 250801124 -31392540 - HAL1 LINE L1 -1244 1263 1120 4855 185 24 18 chr1 250801133 250802202 -31391462 - L1MD1 LINE L1 -16 6226 5146 1792 208 7 27 chr1 250802194 250802642 -31391022 - L1MD1 LINE L1 -1236 4910 4472 * 390 224 103 9 chr1 250802838 250802945 -31390719 - HAL1 LINE L1 -1596 911 795 377 316 118 20 chr1 250803337 250803641 -31390023 - L2 LINE L2 -1231 2083 1750 513 278 89 18 chr1 250804132 250804301 -31389363 - MIR SINE MIR -73 189 9 362 337 11 3 chr1 250804794 250804977 -31388687 - MIR SINE MIR -19 243 8 181 353 15 0 chr1 250805063 250805131 -31388533 + L2 LINE L2 3202 3270 -2 289 154 77 0 chr1 250805984 250806036 -31387628 + MER3 DNA MER1_type 35 90 -119 * 743 204 5 81 chr1 250805997 250806062 -31387602 - MER3 DNA MER1_type -5 204 136 1827 124 8 0 chr1 250806062 250806320 -31387344 - AluSx SINE Alu -9 303 44 743 204 5 81 chr1 250806320 250806475 -31387189 - MER3 DNA MER1_type -73 136 1 188 178 0 22 chr1 250807353 250807398 -31386266 + CT-rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr1 250807413 250807442 -31386222 + AT_rich Low_complexity Low_complexity 1 29 0 1764 143 46 7 chr1 250807443 250807723 -31385941 - AluSg SINE Alu -17 293 3 2985 232 97 22 chr1 250807774 250808018 -31385646 - L1MD3 LINE L1 -2 8037 7813 2202 82 20 7 chr1 250808018 250808310 -31385354 - AluSc SINE Alu -13 296 1 2985 232 97 22 chr1 250808310 250808963 -31384701 - L1MD3 LINE L1 -226 7813 7062 180 77 0 0 chr1 250808963 250808989 -31384675 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2985 232 97 22 chr1 250808989 250809108 -31384556 - L1MD3 LINE L1 -977 7062 6953 1639 78 0 28 chr1 250809267 250809484 -31384180 - AluSq SINE Alu -102 211 1 304 268 93 0 chr1 250809492 250809589 -31384075 - MARNA DNA Mariner -42 544 439 204 40 0 0 chr1 250809844 250809869 -31383795 + (TATG)n Simple_repeat Simple_repeat 3 27 0 284 289 116 64 chr1 250809969 250810142 -31383522 - MIR SINE MIR -3 259 78 1967 156 92 17 chr1 250811060 250811084 -31382580 + MSTB LTR MaLR 1 22 -404 2051 138 57 14 chr1 250811084 250811433 -31382231 - THE1B LTR MaLR 0 364 1 1967 156 92 17 chr1 250811433 250811767 -31381897 + MSTB LTR MaLR 22 386 -40 2270 87 0 0 chr1 250811769 250812056 -31381608 + AluY SINE Alu 1 287 -24 29 0 0 0 chr1 250812058 250812087 -31381577 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr1 250812423 250812461 -31381203 + AT_rich Low_complexity Low_complexity 1 38 0 333 0 0 0 chr1 250812480 250812517 -31381147 + (CA)n Simple_repeat Simple_repeat 2 38 0 36 0 0 0 chr1 250812724 250812760 -31380904 + AT_rich Low_complexity Low_complexity 1 36 0 239 300 17 0 chr1 250812852 250812912 -31380752 - MIR SINE MIR -67 141 81 388 365 32 44 chr1 250813161 250813494 -31380170 + L2 LINE L2 2703 3037 -235 218 331 169 8 chr1 250813588 250813718 -31379946 + L2 LINE L2 3122 3272 0 492 292 92 25 chr1 250813893 250814133 -31379531 + MLT1I LTR MaLR 128 383 -26 21 0 0 0 chr1 250815572 250815593 -31378071 + AT_rich Low_complexity Low_complexity 1 21 0 2215 114 0 0 chr1 250816458 250816755 -31376909 + AluSq SINE Alu 4 300 -13 2198 108 10 16 chr1 250817582 250817887 -31375777 - AluSx SINE Alu -9 303 1 195 176 0 0 chr1 250819179 250819213 -31374451 - L2 LINE L2 -1 3312 3279 1499 158 34 0 chr1 250819702 250819968 -31373696 - L1MB3 LINE L1 -7 6176 5902 2339 91 0 3 chr1 250820190 250820499 -31373165 - AluSg SINE Alu -2 308 1 473 311 55 11 chr1 250820593 250820776 -31372888 - MIR SINE MIR -44 218 28 31 0 0 0 chr1 250821382 250821413 -31372251 + AT_rich Low_complexity Low_complexity 1 31 0 2131 194 42 110 chr1 250823752 250823821 -31369843 + MER92B LTR ERV1 2 74 -562 2205 117 0 0 chr1 250823821 250824129 -31369535 + AluSx SINE Alu 1 308 -4 2131 194 42 110 chr1 250824129 250824731 -31368933 + MER92B LTR ERV1 74 627 -9 182 182 36 0 chr1 250824746 250824801 -31368863 + CT-rich Low_complexity Low_complexity 4 60 0 345 216 0 14 chr1 250827514 250827588 -31366076 - LTR28 LTR ERV1 0 1020 948 1478 249 3 26 chr1 250827627 250827968 -31365696 - LTR28 LTR ERV1 -67 953 621 705 210 80 32 chr1 250827995 250828291 -31365373 - LTR28 LTR ERV1 -661 359 1 670 281 27 28 chr1 250828620 250828851 -31364813 - MIR SINE MIR -21 241 14 22 0 0 0 chr1 250829981 250830003 -31363661 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1 250830169 250830202 -31363462 + AT_rich Low_complexity Low_complexity 1 33 0 199 333 13 13 chr1 250830449 250830527 -31363137 - L2 LINE L2 -5 3267 3190 2192 119 3 0 chr1 250831175 250831477 -31362187 - AluSx SINE Alu -9 303 1 1506 62 10 5 chr1 250832119 250832311 -31361353 - AluY SINE Alu -15 296 104 231 229 0 21 chr1 250832455 250832503 -31361161 + L2 LINE L2 3210 3256 -16 21 0 0 0 chr1 250833062 250833083 -31360581 + AT_rich Low_complexity Low_complexity 1 21 0 480 255 11 8 chr1 250833268 250833396 -31360268 + MIR SINE MIR 70 196 -62 2137 135 7 0 chr1 250833693 250833997 -31359667 + AluSx SINE Alu 1 306 -6 2285 111 0 0 chr1 250833997 250834304 -31359360 + AluSc SINE Alu 1 307 -2 791 245 103 0 chr1 250834947 250835151 -31358513 + MIR SINE MIR 37 261 -1 1997 75 0 8 chr1 250835456 250835710 -31357954 - AluY SINE Alu -59 252 1 22 35 0 0 chr1 250836107 250836136 -31357528 + AT_rich Low_complexity Low_complexity 1 29 0 289 308 45 32 chr1 250836276 250836432 -31357232 + MIR SINE MIR 81 238 -24 2255 73 17 13 chr1 250836752 250837052 -31356612 + AluSg SINE Alu 1 301 -9 240 345 71 9 chr1 250837071 250837184 -31356480 + MIR3 SINE MIR 85 204 -4 264 403 15 15 chr1 250837322 250837456 -31356208 + L2 LINE L2 3139 3272 0 24 67 0 0 chr1 250837490 250837535 -31356129 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr1 250837900 250837935 -31355729 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr1 250839928 250839958 -31353706 + AT_rich Low_complexity Low_complexity 1 30 0 201 147 0 0 chr1 250840267 250840301 -31353363 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 635 272 117 89 chr1 250842294 250842823 -31350841 + MLT1K LTR MaLR 44 587 -1 182 326 0 92 chr1 250843081 250843179 -31350485 - MIR SINE MIR -19 243 155 313 324 53 53 chr1 250843234 250843328 -31350336 + MIR SINE MIR 3 96 -166 2509 43 0 7 chr1 250843328 250843629 -31350035 - AluY SINE Alu -12 299 1 313 324 53 53 chr1 250843629 250843778 -31349886 + MIR SINE MIR 95 246 -16 1850 153 10 3 chr1 250844175 250844470 -31349194 + AluSx SINE Alu 3 299 -13 457 338 123 51 chr1 250844542 250845244 -31348420 + L2 LINE L2 1066 1817 -1497 5753 87 19 32 chr1 250846120 250847146 -31346518 + L1PA13 LINE L1 4404 5442 -721 2043 99 0 4 chr1 250847146 250847418 -31346246 + AluSg SINE Alu 1 271 -39 5753 87 19 32 chr1 250847418 250847826 -31345838 + L1PA13 LINE L1 5442 5877 -286 1640 156 135 26 chr1 250847826 250848211 -31345453 + MSTA LTR MaLR 1 427 -1 5753 87 19 32 chr1 250848211 250848483 -31345181 + L1PA13 LINE L1 5877 6151 -12 2057 112 67 20 chr1 250848663 250849021 -31344643 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr1 250849679 250849702 -31343962 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 309 230 236 24 chr1 250850222 250850387 -31343277 + MIR SINE MIR 63 262 0 278 335 46 53 chr1 250850384 250850536 -31343128 - L2 LINE L2 0 3313 3163 * 28 29 0 0 chr1 250850904 250850939 -31342725 + AT_rich Low_complexity Low_complexity 1 35 0 680 235 27 0 chr1 250851418 250851567 -31342097 + MER5A DNA MER1_type 35 187 -2 245 357 87 0 chr1 250851772 250851898 -31341766 - MIR SINE MIR -37 225 89 226 267 0 53 chr1 250857289 250857364 -31336300 - MIR SINE MIR -87 175 105 1176 298 70 16 chr1 250857860 250858477 -31335187 - L1ME3A LINE L1 -223 5947 5298 2235 93 0 13 chr1 250858560 250858861 -31334803 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr1 250858970 250858999 -31334665 + AT_rich Low_complexity Low_complexity 1 29 0 2281 223 140 53 chr1 250859186 250860175 -31333489 + L1MC5 LINE L1 6409 7524 -437 420 37 0 0 chr1 250860175 250860229 -31333435 + (CA)n Simple_repeat Simple_repeat 1 54 0 2281 223 140 53 chr1 250860229 250860463 -31333201 + L1MC5 LINE L1 7524 7736 -225 277 284 55 9 chr1 250860465 250860574 -31333090 + L1MC5 LINE L1 7798 7911 -50 30 0 0 0 chr1 250862763 250862793 -31330871 + AT_rich Low_complexity Low_complexity 1 30 0 2309 86 0 3 chr1 250863962 250864264 -31329400 - AluY SINE Alu -8 303 3 1899 215 69 5 chr1 250864472 250864877 -31328787 + MER70A LTR ERVL 38 468 -4 342 0 0 0 chr1 250864947 250864985 -31328679 + (TG)n Simple_repeat Simple_repeat 2 39 0 354 287 72 86 chr1 250867024 250867118 -31326546 + HAL1 LINE L1 964 1058 -1449 2209 128 0 0 chr1 250867118 250867430 -31326234 + AluSx SINE Alu 1 312 0 354 287 72 86 chr1 250867430 250867614 -31326050 + HAL1 LINE L1 1058 1238 -1269 1172 259 176 6 chr1 250867623 250868106 -31325558 + HAL1 LINE L1 1510 2074 -433 270 0 0 0 chr1 250868197 250868227 -31325437 + (TG)n Simple_repeat Simple_repeat 2 31 0 385 256 40 14 chr1 250868270 250868493 -31325171 + L1M1 LINE L1 16 244 -7321 2165 100 0 0 chr1 250868854 250869133 -31324531 + AluSg SINE Alu 1 279 -31 23 33 0 0 chr1 250869485 250869515 -31324149 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr1 250869651 250869689 -31323975 + AT_rich Low_complexity Low_complexity 1 38 0 568 259 27 77 chr1 250870280 250870473 -31323191 + L1MEd LINE L1 958 1132 -4987 2312 89 0 3 chr1 250870473 250870775 -31322889 + AluSg SINE Alu 1 301 -9 568 259 27 77 chr1 250870775 250870878 -31322786 + L1MEd LINE L1 1132 1239 -4880 314 292 58 0 chr1 250871011 250871148 -31322516 + HAL1 LINE L1 1500 1644 -863 705 142 50 0 chr1 250871405 250871525 -31322139 + AluSq/x SINE Alu 8 133 -179 1794 176 0 7 chr1 250871733 250872035 -31321629 - AluSx SINE Alu -8 304 5 431 269 156 76 chr1 250872404 250872784 -31320880 - HAL1 LINE L1 -1938 569 134 1602 135 13 64 chr1 250872784 250873096 -31320568 - AluJo SINE Alu -16 296 1 431 269 156 76 chr1 250873096 250873242 -31320422 - HAL1 LINE L1 -2373 134 1 25 31 0 0 chr1 250873260 250873292 -31320372 + AT_rich Low_complexity Low_complexity 1 32 0 757 258 6 6 chr1 250873564 250873742 -31319922 - MIR SINE MIR -1 261 84 21 57 0 0 chr1 250873815 250873850 -31319814 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 250874200 250874222 -31319442 + AT_rich Low_complexity Low_complexity 1 22 0 2157 125 7 0 chr1 250874343 250874648 -31319016 + AluSq SINE Alu 1 307 -6 25 51 0 0 chr1 250874896 250874935 -31318729 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr1 250875775 250875812 -31317852 + AT_rich Low_complexity Low_complexity 1 37 0 335 356 75 0 chr1 250877239 250877385 -31316279 - MIR SINE MIR -15 247 91 296 244 70 0 chr1 250878008 250878094 -31315570 + MIR SINE MIR 100 191 -71 22 0 0 0 chr1 250878893 250878915 -31314749 + AT_rich Low_complexity Low_complexity 1 22 0 321 290 99 79 chr1 250878919 250879385 -31314279 + HAL1 LINE L1 1072 1546 -961 234 278 33 33 chr1 250879444 250879534 -31314130 + HAL1 LINE L1 1621 1710 -797 24 32 0 0 chr1 250879629 250879660 -31314004 + AT_rich Low_complexity Low_complexity 1 31 0 2437 206 97 7 chr1 250880064 250880651 -31313013 - L1MC4 LINE L1 -162 7880 7241 1720 196 152 30 chr1 250880654 250880862 -31312802 - L1MC4 LINE L1 -957 7085 6904 1756 153 26 62 chr1 250880862 250881249 -31312415 + THE1C LTR MaLR 1 373 -2 1720 196 152 30 chr1 250881249 250881600 -31312064 - L1MC4 LINE L1 -1138 6904 6458 180 0 0 0 chr1 250882062 250882082 -31311582 + (TA)n Simple_repeat Simple_repeat 1 20 0 2155 110 7 0 chr1 250882083 250882374 -31311290 - AluSx SINE Alu -19 293 1 210 181 28 56 chr1 250884852 250884924 -31308740 + T-rich Low_complexity Low_complexity 1 70 0 2240 98 3 0 chr1 250884962 250885279 -31308385 + AluSg SINE Alu 1 318 0 706 270 14 38 chr1 250885279 250885490 -31308174 + MIR SINE MIR 27 232 -30 314 325 49 59 chr1 250885802 250886005 -31307659 - L2 LINE L2 -56 3216 3016 2179 98 3 0 chr1 250886073 250886360 -31307304 - AluSx SINE Alu -14 298 11 2096 130 0 0 chr1 250887544 250887843 -31305821 + AluSx SINE Alu 1 299 -13 2044 108 16 3 chr1 250888275 250888581 -31305083 - AluSp SINE Alu -1 312 3 180 253 27 67 chr1 250888596 250888671 -31304993 - L2 LINE L2 -534 2780 2709 2197 102 0 22 chr1 250888747 250889062 -31304602 - AluSx SINE Alu -4 308 1 198 261 22 0 chr1 250890132 250890178 -31303486 - MIR SINE MIR -1 261 215 * 200 189 0 54 chr1 250890144 250890181 -31303483 - L2 LINE L2 -19 3253 3219 270 321 94 9 chr1 250890375 250890481 -31303183 + L2 LINE L2 3199 3313 0 2135 111 0 7 chr1 250890575 250890872 -31302792 - AluSx SINE Alu -17 295 1 215 364 0 0 chr1 250891014 250891080 -31302584 - L2 LINE L2 -8 3264 3199 495 290 53 24 chr1 250891163 250891332 -31302332 + MIR SINE MIR 86 259 -3 987 124 41 0 chr1 250891956 250892101 -31301563 + AluSg/x SINE Alu 147 297 -15 1917 129 7 0 chr1 250892485 250892793 -31300871 + AluSx SINE Alu 1 310 0 1764 144 65 0 chr1 250894217 250894494 -31299170 + AluJb SINE Alu 1 295 -17 256 279 163 60 chr1 250894585 250894800 -31298864 - MIR SINE MIR 0 262 26 2855 207 21 30 chr1 250894842 250895500 -31298164 - MER82 DNA MER2_type 0 653 2 592 158 10 148 chr1 250898889 250899085 -31294579 + MER53 DNA DNA 19 187 -2 1836 182 0 3 chr1 250899639 250899952 -31293712 + AluJo SINE Alu 1 312 0 413 246 188 40 chr1 250900492 250900716 -31292948 + MIR SINE MIR 6 262 0 210 167 0 0 chr1 250900760 250900796 -31292868 + T-rich Low_complexity Low_complexity 5 40 0 27 0 0 0 chr1 250901099 250901126 -31292538 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr1 250902516 250902550 -31291114 + AT_rich Low_complexity Low_complexity 1 34 0 384 192 26 0 chr1 250903352 250903430 -31290234 - MER46C DNA MER2_type 0 338 259 208 263 40 53 chr1 250903631 250903707 -31289957 + L2 LINE L2 2633 2707 -607 915 197 56 56 chr1 250903707 250903976 -31289688 + L1MC3 LINE L1 7508 7776 -9 214 300 15 62 chr1 250904994 250905124 -31288540 + L2 LINE L2 2932 3055 -217 1353 189 58 4 chr1 250905909 250906184 -31287480 - AluSx SINE Alu -22 290 1 1826 129 4 11 chr1 250906382 250906653 -31287011 + AluSx SINE Alu 28 296 -16 36 40 0 0 chr1 250907344 250907394 -31286270 + AT_rich Low_complexity Low_complexity 1 50 0 189 200 200 86 chr1 250908934 250909039 -31284625 + MER5B DNA MER1_type 45 161 -17 823 222 116 0 chr1 250909141 250909339 -31284325 - MER58A DNA MER1_type 0 224 4 580 218 188 35 chr1 250909516 250909718 -31283946 - MIR SINE MIR -8 254 22 2223 98 10 3 chr1 250910216 250910511 -31283153 - AluSx SINE Alu -15 297 1 2290 109 0 0 chr1 250911289 250911602 -31282062 + AluSq SINE Alu 1 313 0 1843 136 11 4 chr1 250911905 250912185 -31281479 + AluSx SINE Alu 1 282 -30 2035 125 10 3 chr1 250913371 250913660 -31280004 + AluSx SINE Alu 1 291 -21 267 306 96 51 chr1 250914684 250914841 -31278823 + MIR SINE MIR 21 184 -78 311 245 168 28 chr1 250916629 250916772 -31276892 + MIR SINE MIR 84 246 -16 453 269 32 45 chr1 250917277 250917434 -31276230 + L1ME2 LINE L1 6017 6333 -1 2084 119 3 0 chr1 250919571 250919865 -31273799 + AluSx SINE Alu 2 296 -16 247 303 123 57 chr1 250920256 250920378 -31273286 + L2 LINE L2 3134 3263 -9 2017 131 0 0 chr1 250920584 250920904 -31272760 + AluSx SINE Alu 1 320 0 369 164 28 7 chr1 250921118 250921202 -31272462 + AluS SINE Alu 1 73 -229 4245 120 17 49 chr1 250921822 250922536 -31271128 - LTR8 LTR ERV1 0 691 1 342 0 0 0 chr1 250922563 250922601 -31271063 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1974 133 52 72 chr1 250922842 250923087 -31270577 - MER4B LTR ERV1 -1 609 374 2062 116 0 0 chr1 250923087 250923363 -31270301 + AluSx SINE Alu 1 276 -36 1974 133 52 72 chr1 250923363 250923517 -31270147 - MER4B LTR ERV1 -236 374 218 1941 105 11 0 chr1 250923519 250923786 -31269878 + AluSg SINE Alu 2 271 -39 1678 147 41 24 chr1 250923889 250924182 -31269482 - AluJo SINE Alu -11 301 4 258 79 0 0 chr1 250924184 250924222 -31269442 - L1MCa LINE L1 -4105 2321 2284 2214 76 0 57 chr1 250924222 250924538 -31269126 - AluSg SINE Alu -12 298 1 266 286 138 32 chr1 250925010 250925199 -31268465 - L2 LINE L2 -559 2755 2547 22 0 0 0 chr1 250926440 250926462 -31267202 + AT_rich Low_complexity Low_complexity 1 22 0 673 124 47 8 chr1 250927058 250927187 -31266477 + L1MA5 LINE L1 6162 6295 -5 374 327 84 19 chr1 250928034 250928248 -31265416 + L2 LINE L2 2847 3074 -198 25 0 0 0 chr1 250928684 250928709 -31264955 + AT_rich Low_complexity Low_complexity 1 25 0 197 256 26 26 chr1 250928803 250928881 -31264783 + MIR SINE MIR 160 237 -25 216 0 0 0 chr1 250929375 250929399 -31264265 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2129 128 0 0 chr1 250929403 250929692 -31263972 - AluSx SINE Alu -23 289 1 212 311 58 48 chr1 250931512 250931718 -31261946 + L2 LINE L2 2848 3055 -217 2032 108 14 10 chr1 250932285 250932581 -31261083 - AluSx SINE Alu -15 297 1 352 222 9 65 chr1 250932906 250933014 -31260650 + MER102a DNA MER1_type 229 330 0 351 283 54 0 chr1 250933081 250933173 -31260491 - MIR SINE MIR -107 155 59 246 181 12 24 chr1 250933455 250933538 -31260126 + (TA)n Simple_repeat Simple_repeat 2 83 0 3979 141 61 79 chr1 250983657 250984562 -31209102 + MER4D LTR ERV1 1 648 -16 1436 196 0 11 chr1 250984562 250984832 -31208832 + AluJb SINE Alu 1 267 -45 186 118 0 0 chr1 250985410 250985444 -31208220 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 21 82 0 0 chr1 250986147 250986196 -31207468 + AT_rich Low_complexity Low_complexity 1 49 0 249 305 0 19 chr1 250986604 250986709 -31206955 + (CATATA)n Simple_repeat Simple_repeat 4 106 0 216 382 69 20 chr1 250987470 250987572 -31206092 - L2 LINE L2 -18 3254 3148 391 122 0 111 chr1 250988467 250988557 -31205107 - L1PA10 LINE L1 0 6168 6089 1376 190 63 14 chr1 250988853 250989137 -31204527 + AluSx SINE Alu 1 298 -4 1993 141 3 7 chr1 250989139 250989436 -31204228 + AluSx SINE Alu 3 298 -14 434 316 80 30 chr1 250989450 250989687 -31203977 + MIR SINE MIR 13 261 -1 216 200 0 0 chr1 250991087 250991132 -31202532 + (TA)n Simple_repeat Simple_repeat 2 46 0 666 136 98 8 chr1 250991626 250991758 -31201906 - L1MD3 LINE L1 -10 7985 7842 2312 307 99 0 chr1 250991758 250992263 -31201401 + Tigger7 DNA MER2_type 1 555 -1932 390 169 156 13 chr1 250992260 250992337 -31201327 + Tigger7 DNA MER2_type 2403 2490 -1 * 1503 177 148 13 chr1 250992345 250992724 -31200940 - L1MD3 LINE L1 -155 7840 7411 409 211 89 0 chr1 250992724 250992814 -31200850 - MLT1F1 LTR MaLR -433 134 37 422 181 103 26 chr1 250992817 250992972 -31200692 - L1MD3 LINE L1 -877 7118 6952 5729 148 25 17 chr1 250993072 250993276 -31200388 + L1MA9 LINE L1 4441 4642 -1670 2094 139 7 0 chr1 250993276 250993586 -31200078 + AluSx SINE Alu 1 312 0 5729 148 25 17 chr1 250993586 250995205 -31198459 + L1MA9 LINE L1 4642 6279 -33 992 120 0 0 chr1 250995203 250995353 -31198311 + L1M2 LINE L1 5363 5512 -800 * 423 167 12 12 chr1 250995344 250995428 -31198236 + L1 LINE L1 4507 4590 -1556 * 237 50 0 75 chr1 250995434 250995474 -31198190 + L1MA9 LINE L1 6275 6311 -1 1321 234 28 7 chr1 250995492 250995783 -31197881 - MLT1F1-int LTR MaLR -129 1606 1310 250 274 12 0 chr1 250995943 250996027 -31197637 - MLT1F1-int LTR MaLR -965 770 686 276 250 48 12 chr1 250996120 250996204 -31197460 - MLT1F1-int LTR MaLR -628 743 657 380 203 23 94 chr1 250996320 250996448 -31197216 - MLT1A2 LTR MaLR -255 119 1 267 45 0 68 chr1 250996479 250996523 -31197141 + L1MA9 LINE L1 6072 6112 -200 2235 141 8 35 chr1 250996561 250996959 -31196705 + L1PA16 LINE L1 5764 6150 -16 482 251 61 58 chr1 250997397 250997692 -31195972 - MER34B LTR ERV1 0 565 270 257 297 132 0 chr1 250997776 250997867 -31195797 - MER34B LTR ERV1 -458 107 5 288 0 0 0 chr1 250997887 250997919 -31195745 + (CA)n Simple_repeat Simple_repeat 2 33 0 1746 144 15 0 chr1 250998019 250998283 -31195381 - AluSg SINE Alu -40 270 3 211 169 0 34 chr1 250998378 250998437 -31195227 + CT-rich Low_complexity Low_complexity 3 59 0 1176 149 0 0 chr1 250998493 250998668 -31194996 + AluSg/x SINE Alu 126 300 -12 2346 86 0 10 chr1 250999527 250999830 -31193834 + AluSc SINE Alu 1 300 -9 2355 158 34 34 chr1 251000304 251000747 -31192917 - MSTB2 LTR MaLR 0 457 15 23 0 0 0 chr1 251001249 251001272 -31192392 + AT_rich Low_complexity Low_complexity 1 23 0 4015 186 28 52 chr1 251001274 251001447 -31192217 + L1MA9 LINE L1 4457 4633 -1679 4714 78 11 11 chr1 251001447 251002084 -31191580 + L1PA10 LINE L1 5509 6161 -7 4015 186 28 52 chr1 251002084 251003384 -31190280 + L1MA9 LINE L1 4633 5872 -440 2413 94 0 0 chr1 251003384 251003693 -31189971 + AluSx SINE Alu 1 309 -3 4015 186 28 52 chr1 251003693 251004087 -31189577 + L1MA9 LINE L1 5872 6274 -38 24 67 0 0 chr1 251004087 251004132 -31189532 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 251004962 251004984 -31188680 + AT_rich Low_complexity Low_complexity 1 22 0 180 286 0 16 chr1 251005399 251005462 -31188202 + L2 LINE L2 2337 2398 -916 1816 177 0 3 chr1 251006699 251006998 -31186666 + AluJb SINE Alu 1 298 -14 6664 124 76 8 chr1 251008086 251009233 -31184431 + Tigger3b DNA MER2_type 3 1227 -4 3087 143 50 29 chr1 251009703 251010261 -31183403 + LTR8A LTR ERV1 158 727 0 1119 157 91 22 chr1 251011937 251012211 -31181453 + MER33 DNA MER1_type 32 324 0 26 50 0 0 chr1 251012485 251012525 -31181139 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr1 251012980 251013008 -31180656 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 251013566 251013589 -31180075 + AT_rich Low_complexity Low_complexity 1 23 0 199 232 0 58 chr1 251014354 251014423 -31179241 - MIR SINE MIR -50 212 148 1923 144 0 3 chr1 251014582 251014873 -31178791 + AluJb SINE Alu 13 302 -10 248 267 0 13 chr1 251014921 251014996 -31178668 + (TA)n Simple_repeat Simple_repeat 2 75 0 503 186 0 12 chr1 251015637 251015723 -31177941 + AluJ/FLAM SINE Alu 3 87 -225 219 183 42 14 chr1 251015817 251015888 -31177776 + (TA)n Simple_repeat Simple_repeat 2 74 0 2529 253 127 19 chr1 251015935 251017253 -31176411 - L1M4 LINE L1 -2096 4050 2591 753 138 16 16 chr1 251017331 251017454 -31176210 + FLAM_C SINE Alu 3 125 -18 529 244 48 67 chr1 251017543 251017595 -31176069 + MLT1J LTR MaLR 1 52 -459 1004 216 28 5 chr1 251017595 251017813 -31175851 - MER58A DNA MER1_type 0 224 2 529 244 48 67 chr1 251017813 251017969 -31175695 + MLT1J LTR MaLR 52 205 -306 417 226 128 0 chr1 251018050 251018152 -31175512 - LTR40b LTR ERVL -40 422 308 213 139 0 0 chr1 251018475 251018511 -31175153 + L2 LINE L2 3269 3304 -9 566 288 98 53 chr1 251018563 251019052 -31174612 - HAL1 LINE L1 -1410 1097 587 709 282 44 52 chr1 251019179 251019544 -31174120 - HAL1 LINE L1 -2098 409 48 281 317 219 29 chr1 251019716 251019921 -31173743 - MIR SINE MIR -7 255 12 297 344 128 0 chr1 251020110 251020290 -31173374 - MIR SINE MIR -55 207 5 1224 238 55 39 chr1 251021034 251021417 -31172247 - MLT1B LTR MaLR 0 390 2 410 225 45 0 chr1 251021418 251021529 -31172135 - MLT1B-int LTR MaLR 0 1735 1620 1467 115 22 52 chr1 251021543 251021567 -31172097 + L1 LINE L1 4075 4098 -2048 2080 125 0 0 chr1 251021567 251021864 -31171800 - AluY SINE Alu -14 297 1 1467 115 22 52 chr1 251021864 251022109 -31171555 + L1 LINE L1 4098 4336 -1810 318 278 221 38 chr1 251022324 251022587 -31171077 + MLT1J LTR MaLR 201 511 0 31 58 0 0 chr1 251025011 251025063 -31168601 + AT_rich Low_complexity Low_complexity 1 52 0 1449 187 26 15 chr1 251025638 251025906 -31167758 + AluJb SINE Alu 21 291 -21 591 259 216 29 chr1 251026008 251026425 -31167239 - HAL1 LINE L1 -1 2506 2012 1160 289 39 34 chr1 251026580 251027171 -31166493 - HAL1 LINE L1 -1185 1322 729 308 308 177 23 chr1 251027403 251027747 -31165917 - HAL1 LINE L1 -1843 664 268 214 311 38 38 chr1 251028793 251028899 -31164765 - L2 LINE L2 -176 3096 2991 181 204 0 23 chr1 251028898 251028942 -31164722 + L2 LINE L2 3271 3313 0 * 185 122 49 0 chr1 251030936 251030977 -31162687 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1807 173 0 7 chr1 251031706 251032006 -31161658 + AluJo SINE Alu 3 300 -12 1921 193 15 35 chr1 251032671 251033070 -31160594 + MLT2C1 LTR ERVL 1 391 -6 311 280 74 11 chr1 251033272 251033447 -31160217 - L1M4 LINE L1 -1563 5285 5100 22 0 0 0 chr1 251033472 251033494 -31160170 + AT_rich Low_complexity Low_complexity 1 22 0 363 314 37 11 chr1 251033859 251034050 -31159614 - L1M4 LINE L1 -2208 4640 4445 2267 143 16 8 chr1 251034345 251034717 -31158947 + THE1C LTR MaLR 1 375 0 1676 135 39 55 chr1 251035457 251035769 -31157895 - MER7A DNA MER2_type 0 346 42 400 282 40 123 chr1 251035815 251036287 -31157377 - HAL1 LINE L1 -1151 1356 924 259 200 73 0 chr1 251037025 251037080 -31156584 - L2 LINE L2 -1 3271 3213 1321 353 79 40 chr1 251037245 251037939 -31155725 - L2 LINE L2 -421 2893 2133 1862 168 87 39 chr1 251037939 251038374 -31155290 - MSTB2 LTR MaLR 0 457 2 1321 353 79 40 chr1 251038374 251038841 -31154823 - L2 LINE L2 -1181 2133 1686 564 274 62 67 chr1 251039001 251039050 -31154614 - L1MC/D LINE L1 -460 5644 5596 714 216 116 20 chr1 251039050 251039249 -31154415 + MER20 DNA MER1_type 2 219 0 564 274 62 67 chr1 251039249 251039568 -31154096 - L1MC/D LINE L1 -508 5596 5266 498 280 86 84 chr1 251039599 251040589 -31153075 - L1MEd LINE L1 -4862 1257 297 2177 186 32 44 chr1 251040764 251041344 -31152320 - L1M4 LINE L1 -3512 3336 2760 212 259 19 28 chr1 251041361 251041469 -31152195 + T-rich Low_complexity Low_complexity 2 108 0 222 246 0 15 chr1 251041770 251041835 -31151829 + (TA)n Simple_repeat Simple_repeat 2 65 0 266 289 56 46 chr1 251042021 251042302 -31151362 - L1ME LINE L1 -320 5842 5565 262 311 71 25 chr1 251042473 251042626 -31151038 - L1ME LINE L1 -1680 4466 4322 890 222 98 69 chr1 251042626 251043005 -31150659 - MLT1B LTR MaLR 0 390 1 262 311 71 25 chr1 251043005 251043218 -31150446 - L1ME LINE L1 -1824 4322 4083 256 359 123 0 chr1 251043341 251043447 -31150217 + MIR SINE MIR 2 120 -142 515 191 0 0 chr1 251043551 251043645 -31150019 + AluJ/FRAM SINE Alu 217 310 -2 1028 156 123 19 chr1 251043689 251043900 -31149764 + MER44D DNA MER2_type 1 503 -106 1478 129 163 117 chr1 251043903 251044200 -31149464 - MER4A LTR ERV1 0 664 343 2179 106 17 0 chr1 251044200 251044501 -31149163 - AluSp SINE Alu -6 307 2 1478 129 163 117 chr1 251044501 251044589 -31149075 - MER4A LTR ERV1 -321 343 261 531 167 21 10 chr1 251044589 251044685 -31148979 - MER4A LTR ERV1 -566 98 2 1964 128 33 82 chr1 251044687 251045053 -31148611 + MER7A DNA MER2_type 1 346 0 414 258 10 0 chr1 251045064 251045161 -31148503 + MER44D DNA MER2_type 508 605 0 320 354 10 15 chr1 251045161 251045310 -31148354 - MIR SINE MIR -62 146 3 2313 88 7 3 chr1 251045480 251045785 -31147879 + AluSq SINE Alu 1 306 -7 2746 211 53 8 chr1 251046913 251047538 -31146126 - MER82 DNA MER2_type 0 653 1 252 140 40 20 chr1 251047596 251047646 -31146018 + L2 LINE L2 3263 3313 0 1852 190 40 57 chr1 251048089 251048595 -31145069 + MLT1D LTR MaLR 3 499 -6 820 217 62 83 chr1 251048963 251049529 -31144135 + MLT1E3 LTR MaLR 1 497 -8 2066 128 7 0 chr1 251049681 251049989 -31143675 + AluSx SINE Alu 1 310 0 485 252 52 0 chr1 251054814 251054949 -31138715 - MIR SINE MIR -36 226 85 2284 93 3 0 chr1 251055175 251055476 -31138188 + AluSq SINE Alu 1 302 -11 1741 143 52 36 chr1 251055492 251055856 -31137808 + THE1C LTR MaLR 6 375 0 2553 11 0 0 chr1 251056179 251056457 -31137207 - AluYb8 SINE Alu -9 309 32 564 241 92 45 chr1 251056897 251057073 -31136591 - MIR SINE MIR -51 211 33 990 233 11 50 chr1 251057226 251057488 -31136176 + L2 LINE L2 2272 2523 -791 1490 216 51 25 chr1 251057566 251057959 -31135705 + MLT1C LTR MaLR 6 408 -59 261 0 0 0 chr1 251057960 251057989 -31135675 + (TTA)n Simple_repeat Simple_repeat 2 30 0 978 132 0 0 chr1 251057989 251058118 -31135546 - AluSq/x SINE Alu -183 129 1 234 209 0 30 chr1 251058119 251058186 -31135478 + MLT1D LTR MaLR 326 505 0 195 260 0 0 chr1 251058191 251058241 -31135423 + L2 LINE L2 2525 2574 -740 940 254 80 20 chr1 251058789 251059088 -31134576 + L2 LINE L2 2997 3313 0 1429 234 65 0 chr1 251059549 251059882 -31133782 + MER82 DNA MER2_type 1 355 -298 2706 88 11 0 chr1 251059882 251060259 -31133405 - MER57B LTR ERV1 0 434 54 483 204 11 0 chr1 251060249 251060342 -31133322 + MER82 DNA MER2_type 554 647 -6 * 234 293 53 13 chr1 251060478 251060553 -31133111 - L2 LINE L2 -33 3239 3162 361 230 0 46 chr1 251060872 251060959 -31132705 - L2 LINE L2 -2 3311 3229 2244 108 0 0 chr1 251061707 251062002 -31131662 - AluSc SINE Alu -14 295 1 731 263 99 5 chr1 251062219 251062446 -31131218 - MIR SINE MIR -3 259 13 230 295 90 0 chr1 251063889 251063967 -31129697 + L2 LINE L2 3187 3271 -1 301 136 61 15 chr1 251064024 251064090 -31129574 + Charlie7 DNA MER1_type 37 105 -2507 220 164 273 0 chr1 251064381 251064436 -31129228 - MIR SINE MIR -70 192 123 445 234 103 0 chr1 251064438 251064583 -31129081 - L1MEc LINE L1 -2511 3704 3545 769 136 56 0 chr1 251064591 251064716 -31128948 + FLAM_A SINE Alu 1 132 -1 2315 104 3 3 chr1 251064725 251065034 -31128630 + AluSg SINE Alu 1 309 -1 444 241 36 0 chr1 251065035 251065348 -31128316 + (TA)n Simple_repeat Simple_repeat 1 324 0 1565 203 8 0 chr1 251065417 251065683 -31127981 - AluJo SINE Alu -44 268 1 3735 252 74 7 chr1 251065690 251067342 -31126322 - L1MEc LINE L1 -2806 3409 1687 2066 226 89 31 chr1 251067342 251068024 -31125640 - Zaphod DNA AcHobo -3280 751 30 2145 112 6 29 chr1 251069093 251069407 -31124257 - AluSx SINE Alu -5 307 1 472 300 101 31 chr1 251070235 251070492 -31123172 + L1ME4a LINE L1 5690 5964 -157 210 300 22 11 chr1 251070492 251070582 -31123082 + (TA)n Simple_repeat Simple_repeat 1 91 0 236 167 0 78 chr1 251070584 251070674 -31122990 + L1ME4a LINE L1 5990 6072 -49 24 53 0 0 chr1 251072134 251072172 -31121492 + AT_rich Low_complexity Low_complexity 1 38 0 1412 144 4 26 chr1 251072425 251072654 -31121010 - AluJo SINE Alu -2 310 87 788 193 111 29 chr1 251073942 251074284 -31119380 + L1MC5 LINE L1 7406 7775 -186 346 200 13 0 chr1 251074306 251074381 -31119283 - MER47A DNA MER2_type 0 366 291 280 323 21 0 chr1 251074673 251074769 -31118895 + L2 LINE L2 3182 3279 -34 360 64 0 0 chr1 251076857 251076904 -31116760 + (TG)n Simple_repeat Simple_repeat 2 48 0 384 284 83 59 chr1 251078072 251078410 -31115254 + L1ME3A LINE L1 5794 6139 -31 183 279 147 0 chr1 251078512 251078580 -31115084 - MIR SINE MIR -127 135 58 460 325 190 13 chr1 251079977 251080288 -31113376 - L3 LINE CR1 -33 1544 1179 392 226 87 0 chr1 251080325 251080440 -31113224 - MER117 DNA MER1_type -72 125 1 1008 75 14 20 chr1 251081383 251081530 -31112134 + L1PA10 LINE L1 6019 6164 -4 273 373 27 14 chr1 251081804 251082024 -31111640 - L2 LINE L2 -934 2380 2158 1616 235 67 44 chr1 251083701 251084178 -31109486 + MLT1E2 LTR MaLR 137 624 -2 1340 205 72 168 chr1 251085388 251086235 -31107429 - LTR41 LTR ERVL -5 768 3 212 0 36 0 chr1 251086280 251086308 -31107356 + (TTG)n Simple_repeat Simple_repeat 2 30 0 217 159 23 0 chr1 251087019 251087063 -31106601 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 2244 181 57 105 chr1 251087545 251088175 -31105489 - MER77 LTR ERV1 0 605 6 386 251 80 46 chr1 251088607 251088782 -31104882 + L3b LINE CR1 1317 1497 -86 448 229 179 21 chr1 251089689 251089829 -31103835 + MER5A DNA MER1_type 28 189 0 767 220 44 0 chr1 251089833 251090015 -31103649 + MER58A DNA MER1_type 30 219 -5 674 257 86 32 chr1 251091456 251091581 -31102083 - L2 LINE L2 0 3313 3196 189 0 0 0 chr1 251091581 251091602 -31102062 + (GA)n Simple_repeat Simple_repeat 2 22 0 674 257 86 32 chr1 251091602 251091756 -31101908 - L2 LINE L2 -117 3196 3019 1534 139 191 10 chr1 251092927 251093236 -31100428 + MER47A DNA MER2_type 2 366 0 604 245 21 0 chr1 251093361 251093504 -31100160 - MER82 DNA MER2_type -31 622 477 265 370 25 8 chr1 251093585 251093704 -31099960 + MIR SINE MIR 31 151 -111 1598 156 30 7 chr1 251093786 251094055 -31099609 - AluSq SINE Alu -38 275 1 497 216 0 0 chr1 251094065 251094162 -31099502 - MER82 DNA MER2_type -556 97 1 3572 232 40 34 chr1 251094261 251095462 -31098202 + L1MC3 LINE L1 5295 6502 -1283 246 62 0 0 chr1 251097118 251097150 -31096514 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 190 344 0 0 chr1 251098404 251098465 -31095199 - MIR SINE MIR -104 158 98 1982 191 92 12 chr1 251099066 251099470 -31094194 + MLT1C LTR MaLR 22 457 -10 310 279 47 0 chr1 251099987 251100073 -31093591 + MIR SINE MIR 65 154 -108 286 226 48 0 chr1 251100127 251100189 -31093475 - MIR SINE MIR -58 150 86 247 327 10 0 chr1 251100209 251100310 -31093354 - MER70B LTR ERVL -17 561 460 184 298 0 21 chr1 251100751 251100798 -31092866 - MIR SINE MIR -163 99 54 200 274 59 69 chr1 251100835 251100937 -31092727 - L2 LINE L2 -34 3279 3179 220 253 120 0 chr1 251101005 251101080 -31092584 - L2 LINE L2 -4 3268 3185 270 276 31 79 chr1 251101140 251101267 -31092397 - L2 LINE L2 -15 3257 3137 513 272 80 66 chr1 251101842 251102055 -31091609 + MIR SINE MIR 1 216 -46 308 198 31 52 chr1 251102253 251102349 -31091315 - MLT1K LTR MaLR -83 505 412 2108 122 0 10 chr1 251105509 251105804 -31087860 + AluSq SINE Alu 1 292 -21 263 303 156 33 chr1 251107222 251107344 -31086320 - MIR SINE MIR -105 157 21 24 67 0 0 chr1 251107549 251107594 -31086070 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chr1 251107871 251107900 -31085764 + (A)n Simple_repeat Simple_repeat 1 29 0 32 0 0 0 chr1 251109169 251109201 -31084463 + AT_rich Low_complexity Low_complexity 1 32 0 37 76 0 0 chr1 251109429 251109508 -31084156 + AT_rich Low_complexity Low_complexity 1 79 0 2262 121 0 0 chr1 251111840 251112147 -31081517 - AluSc SINE Alu -2 307 1 222 289 58 29 chr1 251112955 251113059 -31080605 - MIR SINE MIR -78 184 78 2373 171 49 24 chr1 251113938 251114388 -31079276 + MLT1C LTR MaLR 3 463 -4 1853 144 3 41 chr1 251114577 251114896 -31078768 + AluJb SINE Alu 1 307 -5 2365 111 53 3 chr1 251115177 251115556 -31078108 + L1MA8 LINE L1 5889 6286 -5 459 0 0 0 chr1 251115774 251115825 -31077839 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2285 118 0 0 chr1 251116095 251116399 -31077265 - AluSx SINE Alu -8 304 1 369 0 0 0 chr1 251118737 251118778 -31074886 + (CA)n Simple_repeat Simple_repeat 1 41 0 1394 224 32 22 chr1 251119728 251120098 -31073566 + L1ME1 LINE L1 5776 6149 -17 1668 266 123 39 chr1 251120185 251121229 -31072435 - L2 LINE L2 0 3313 2165 29 28 0 0 chr1 251121748 251121784 -31071880 + AT_rich Low_complexity Low_complexity 1 36 0 1081 118 12 161 chr1 251122197 251122451 -31071213 + AluSx SINE Alu 9 224 -88 1998 99 3 27 chr1 251122806 251123125 -31070539 - AluSp SINE Alu 0 316 5 1005 181 92 54 chr1 251125939 251126199 -31067465 + L1MC3 LINE L1 6836 7105 -680 263 298 21 11 chr1 251126199 251126293 -31067371 + MLT1F1 LTR MaLR 39 133 -434 2597 171 15 58 chr1 251126293 251126902 -31066762 + L1MC3 LINE L1 7195 7777 -8 22 35 0 0 chr1 251127041 251127070 -31066594 + AT_rich Low_complexity Low_complexity 1 29 0 37 23 0 0 chr1 251127241 251127285 -31066379 + AT_rich Low_complexity Low_complexity 1 44 0 1659 164 10 31 chr1 251127891 251128183 -31065481 + AluJb SINE Alu 1 286 -26 240 163 0 0 chr1 251128270 251128313 -31065351 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 2163 113 30 0 chr1 251128824 251129124 -31064540 - AluSx SINE Alu -1 311 3 2238 90 0 4 chr1 251130073 251130372 -31063292 - AluY SINE Alu 0 300 3 180 0 0 0 chr1 251130391 251130411 -31063253 + (CAA)n Simple_repeat Simple_repeat 2 21 0 275 324 113 52 chr1 251130626 251130839 -31062825 + MLT1K LTR MaLR 329 554 -34 2287 114 0 0 chr1 251130980 251131278 -31062386 + AluSx SINE Alu 1 298 -14 850 245 20 5 chr1 251131710 251131906 -31061758 + MLT1E LTR MaLR 1 199 -394 701 284 101 9 chr1 251133041 251133259 -31060405 + MIR SINE MIR 15 252 -10 264 278 56 11 chr1 251133268 251133358 -31060306 - HsTC2 DNA Tc2 -1802 96 3 8313 196 66 65 chr1 251133825 251134821 -31058843 + L1MC1 LINE L1 4 997 -5429 1785 155 30 3 chr1 251134821 251135124 -31058540 - AluSx SINE Alu -1 311 1 8313 196 66 65 chr1 251135124 251135578 -31058086 + L1MC1 LINE L1 997 1449 -4977 2362 70 13 7 chr1 251135578 251135880 -31057784 + AluY SINE Alu 1 304 -7 8313 196 66 65 chr1 251135880 251137060 -31056604 + L1MC1 LINE L1 1449 2626 -3800 1583 169 163 7 chr1 251137060 251137361 -31056303 + MER7A DNA MER2_type 1 346 0 8313 196 66 65 chr1 251137361 251138606 -31055058 + L1MC1 LINE L1 2626 3868 -2558 1921 124 80 44 chr1 251138606 251138968 -31054696 + THE1C LTR MaLR 1 375 0 8313 196 66 65 chr1 251138968 251139375 -31054289 + L1MC1 LINE L1 3868 4273 -2153 2181 103 20 3 chr1 251139375 251139667 -31053997 + AluSx SINE Alu 3 299 -13 8313 196 66 65 chr1 251139667 251140174 -31053490 + L1MC1 LINE L1 4273 4794 -1632 2015 141 9 9 chr1 251140150 251140491 -31053173 + L1MC1 LINE L1 5768 6108 -505 * 4149 199 38 33 chr1 251140513 251140613 -31053051 + MER21B LTR ERV1 1 99 -764 2278 92 0 0 chr1 251140613 251140921 -31052743 - AluSc SINE Alu 0 308 1 4149 199 38 33 chr1 251140921 251141667 -31051997 + MER21B LTR ERV1 99 852 -11 1475 233 41 6 chr1 251141686 251142029 -31051635 - MLT1A2 LTR MaLR -16 358 4 870 218 49 62 chr1 251142038 251142346 -31051318 - L2 LINE L2 -1190 2124 1821 37 23 0 0 chr1 251143044 251143088 -31050576 + AT_rich Low_complexity Low_complexity 1 44 0 3995 182 167 29 chr1 251143417 251144437 -31049227 - MER52A LTR ERV1 -519 1236 1 927 195 0 0 chr1 251144437 251144611 -31049053 + L1P LINE L1 4917 5090 -1056 1388 226 146 81 chr1 251144611 251145400 -31048264 - LTR1B LTR ERV1 0 1020 12 4630 173 26 37 chr1 251145663 251147157 -31046507 + MER52A LTR ERV1 287 1755 0 6319 188 31 5 chr1 251147157 251148420 -31045244 - L1P LINE L1 -1226 4920 3625 283 200 14 0 chr1 251149599 251149671 -31043993 + MLT1J LTR MaLR 109 245 -340 216 0 0 0 chr1 251150133 251150157 -31043507 + (TG)n Simple_repeat Simple_repeat 2 25 0 666 181 21 25 chr1 251150297 251150457 -31043207 - MLT1E3 LTR MaLR -373 281 65 501 222 69 48 chr1 251150314 251150503 -31043161 - MLT2C1 LTR ERVL -204 193 1 * 278 294 72 116 chr1 251150550 251151129 -31042535 - L2 LINE L2 -613 2701 2148 986 171 148 36 chr1 251151653 251151958 -31041706 - MER44D DNA MER2_type 0 609 1 469 257 86 14 chr1 251151974 251152114 -31041550 - MIR SINE MIR -2 260 111 590 252 213 31 chr1 251152128 251152386 -31041278 - L2 LINE L2 0 3313 3009 1626 297 60 4 chr1 251152392 251152921 -31040743 - L2 LINE L2 -409 2905 2347 2266 109 0 0 chr1 251152921 251153214 -31040450 + AluSq SINE Alu 1 293 -20 23 0 0 0 chr1 251153423 251153446 -31040218 + AT_rich Low_complexity Low_complexity 1 23 0 719 294 101 0 chr1 251155668 251155896 -31037768 - MIR SINE MIR -5 257 7 460 318 69 58 chr1 251155895 251156172 -31037492 + L2 LINE L2 2993 3272 0 * 180 282 106 35 chr1 251157073 251157158 -31036506 - L2 LINE L2 -30 3283 3193 699 273 104 18 chr1 251157368 251157588 -31036076 - MIR SINE MIR -13 249 11 260 276 66 0 chr1 251157788 251157864 -31035800 + MIR SINE MIR 103 183 -79 315 336 40 27 chr1 251157883 251158032 -31035632 - L2 LINE L2 0 3313 3163 258 40 20 40 chr1 251159059 251159109 -31034555 + (GGA)n Simple_repeat Simple_repeat 1 49 0 210 69 0 0 chr1 251159750 251159779 -31033885 - L2 LINE L2 -1 3312 3284 2293 118 31 8 chr1 251159999 251160355 -31033309 - THE1B LTR MaLR 0 364 1 679 185 0 15 chr1 251162030 251162160 -31031504 - FLAM_A SINE Alu -6 136 9 338 345 35 18 chr1 251162167 251162280 -31031384 - L2 LINE L2 0 3272 3158 539 232 0 18 chr1 251164271 251164383 -31029281 - L2 LINE L2 -1 3312 3203 402 285 61 18 chr1 251164676 251164841 -31028823 - MIR SINE MIR -54 208 37 353 263 11 0 chr1 251166061 251166156 -31027508 - Zaphod DNA AcHobo 0 4031 3936 298 256 0 33 chr1 251166716 251166806 -31026858 - Zaphod DNA AcHobo -3944 87 1 2147 136 0 0 chr1 251166954 251167263 -31026401 + AluSx SINE Alu 1 309 -3 2078 152 0 6 chr1 251167920 251168235 -31025429 + AluSq SINE Alu 1 313 0 285 146 0 0 chr1 251169191 251169239 -31024425 + (T)n Simple_repeat Simple_repeat 1 48 0 216 0 0 0 chr1 251169748 251169772 -31023892 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 1311 211 86 26 chr1 251170169 251170520 -31023144 + MLT1A2 LTR MaLR 1 372 -2 1698 167 44 0 chr1 251172087 251172357 -31021307 + AluSx SINE Alu 1 282 -30 222 37 0 0 chr1 251172357 251172384 -31021280 + (TA)n Simple_repeat Simple_repeat 2 28 0 210 393 9 0 chr1 251173013 251173125 -31020539 - L2 LINE L2 -220 3052 2940 4409 109 6 0 chr1 251173573 251174222 -31019442 - L1PA13 LINE L1 -2 6161 5509 234 130 0 0 chr1 251174329 251174375 -31019289 - LTR66 LTR ERVL -171 439 394 234 130 0 0 chr1 251174337 251174383 -31019281 + LTR66 LTR ERVL 394 439 -171 317 304 74 0 chr1 251174671 251174806 -31018858 - MLT1L LTR MaLR -296 319 175 241 268 0 0 chr1 251174838 251174909 -31018755 - MLT1L LTR MaLR -542 73 3 199 308 128 23 chr1 251174994 251175166 -31018498 + L2 LINE L2 2512 2701 -613 1061 325 132 45 chr1 251175979 251177802 -31015862 + L2 LINE L2 1293 3272 0 589 304 34 74 chr1 251178267 251178346 -31015318 + MLT1I LTR MaLR 97 178 -231 2309 103 0 0 chr1 251178346 251178647 -31015017 + AluSx SINE Alu 1 301 -11 589 304 34 74 chr1 251178647 251178893 -31014771 + MLT1I LTR MaLR 178 409 0 228 263 23 45 chr1 251178896 251179029 -31014635 + L1MC4a LINE L1 4094 4223 -1923 993 264 61 64 chr1 251179169 251179692 -31013972 - L2 LINE L2 -67 3246 2726 558 296 78 77 chr1 251179760 251180371 -31013293 + L1MC4a LINE L1 4574 5188 -958 1674 152 34 20 chr1 251180371 251180667 -31012997 + AluJb SINE Alu 1 300 -12 558 296 78 77 chr1 251180667 251180796 -31012868 + L1MC4a LINE L1 5188 5315 -831 564 15 0 0 chr1 251180983 251181048 -31012616 + (GAGAA)n Simple_repeat Simple_repeat 1 65 0 610 308 141 7 chr1 251181048 251181347 -31012317 - L2 LINE L2 -377 2937 2599 369 273 206 19 chr1 251181413 251181622 -31012042 - L1ME LINE L1 -526 5595 5348 790 289 114 62 chr1 251181628 251182127 -31011537 + L2 LINE L2 1915 2439 -875 362 266 72 14 chr1 251182222 251182245 -31011419 + L1MC4a LINE L1 5686 5706 -2102 2157 157 16 19 chr1 251182245 251182621 -31011043 + THE1C LTR MaLR 1 375 0 362 266 72 14 chr1 251182621 251182736 -31010928 + L1MC4a LINE L1 5706 5832 -1976 523 153 10 10 chr1 251183244 251183342 -31010322 + MER4A LTR ERV1 1 98 -566 1847 128 171 20 chr1 251183342 251183693 -31009971 + MER4A LTR ERV1 261 664 0 2577 97 83 41 chr1 251183696 251184164 -31009500 + MER4A-int LTR ERV1 1 621 -5977 4274 79 39 5 chr1 251184164 251184749 -31008915 - LTR14B LTR ERVK 0 608 4 2577 97 83 41 chr1 251184749 251184962 -31008702 + MER4A-int LTR ERV1 621 824 -5774 40951 31 22 1 chr1 251185105 251191130 -31002534 - L1HS LINE L1 -1 6154 3 252 111 0 44 chr1 251191146 251191191 -31002473 + LTR49 LTR ERV1 271 313 -282 9019 116 154 109 chr1 251191191 251192874 -31000790 + MER4A-int LTR ERV1 865 2719 -3879 8882 117 9 4 chr1 251192874 251194153 -30999511 + HSMAR1 DNA Mariner 1 1286 -1 9019 116 154 109 chr1 251194153 251195168 -30998496 + MER4A-int LTR ERV1 2719 3686 -2912 4659 92 54 24 chr1 251195164 251195964 -30997700 + MER4A-int LTR ERV1 3839 4662 -1936 * 1310 210 93 115 chr1 251195964 251196923 -30996741 + LTR1B LTR ERV1 1 1020 0 10989 104 50 18 chr1 251196923 251198051 -30995613 + MER4A-int LTR ERV1 4659 5872 -726 2410 84 14 0 chr1 251198051 251198347 -30995317 + AluY SINE Alu 1 300 -11 10989 104 50 18 chr1 251198347 251199098 -30994566 + MER4A-int LTR ERV1 5872 6598 0 584 126 0 48 chr1 251199099 251199202 -30994462 + MER4A LTR ERV1 1 98 -566 1944 111 11 25 chr1 251199202 251199552 -30994112 + MER4A LTR ERV1 261 664 0 246 337 91 45 chr1 251199616 251199815 -30993849 + MIR SINE MIR 4 211 -51 357 330 73 18 chr1 251200396 251200614 -30993050 + MIR SINE MIR 10 239 -23 292 217 0 17 chr1 251200707 251200767 -30992897 + L2 LINE L2 3245 3303 -10 3572 119 26 4 chr1 251201855 251202394 -30991270 + MER41C LTR ERV1 2 552 -2 2468 71 0 7 chr1 251202641 251202949 -30990715 - AluSq SINE Alu -7 306 1 193 288 175 12 chr1 251203066 251203146 -30990518 + L3b LINE CR1 1478 1570 -13 455 326 89 41 chr1 251204489 251204882 -30988782 - L3b LINE CR1 -45 1538 1127 22 70 0 0 chr1 251205783 251205826 -30987838 + AT_rich Low_complexity Low_complexity 1 43 0 2371 109 0 0 chr1 251206034 251206346 -30987318 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 251209576 251209597 -30984067 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 251209865 251209886 -30983778 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 251211880 251211903 -30981761 + AT_rich Low_complexity Low_complexity 1 23 0 209 294 0 0 chr1 251211998 251212049 -30981615 - L2 LINE L2 0 3272 3222 337 274 0 43 chr1 251212759 251212876 -30980788 + L1MB8 LINE L1 3767 3878 -2268 5374 208 38 32 chr1 251212907 251213679 -30979985 + L1MB8 LINE L1 3826 4592 -1586 2186 120 7 0 chr1 251213679 251213987 -30979677 - AluSg SINE Alu 0 310 1 5374 208 38 32 chr1 251213987 251215555 -30978109 + L1MB8 LINE L1 4592 6172 -6 229 337 60 72 chr1 251217234 251217569 -30976095 - L2 LINE L2 -770 2544 2214 1505 171 83 19 chr1 251217952 251218292 -30975372 + MLT1A1 LTR MaLR 1 499 -6 185 200 25 0 chr1 251219321 251219361 -30974303 - MIR SINE MIR -69 139 99 272 301 89 55 chr1 251219433 251219579 -30974085 + L2 LINE L2 3163 3313 0 653 171 41 71 chr1 251219748 251219918 -30973746 - L1MA10 LINE L1 -1 6333 6169 1736 169 21 3 chr1 251219948 251220238 -30973426 + AluJb SINE Alu 1 295 -17 454 230 261 6 chr1 251220673 251220838 -30972826 + MIR SINE MIR 55 261 -1 184 327 135 19 chr1 251220858 251220962 -30972702 - L2 LINE L2 -968 2346 2231 365 171 40 0 chr1 251221444 251221520 -30972144 - MER53 DNA DNA -84 105 27 210 37 0 0 chr1 251221520 251221547 -30972117 + (TG)n Simple_repeat Simple_repeat 2 28 0 1911 114 66 0 chr1 251221576 251221849 -30971815 - AluSx SINE Alu -21 291 1 333 196 14 189 chr1 251222015 251222158 -30971506 + MIR SINE MIR 9 126 -136 24 67 0 0 chr1 251222682 251222727 -30970937 + AT_rich Low_complexity Low_complexity 1 45 0 47 0 0 0 chr1 251223890 251223937 -30969727 + AT_rich Low_complexity Low_complexity 1 47 0 528 227 16 23 chr1 251224318 251224446 -30969218 + L2 LINE L2 3187 3313 0 23 33 0 0 chr1 251225386 251225416 -30968248 + AT_rich Low_complexity Low_complexity 1 30 0 1845 148 40 17 chr1 251226999 251227296 -30966368 - AluJb SINE Alu -8 304 1 284 0 28 0 chr1 251228011 251228047 -30965617 + (TA)n Simple_repeat Simple_repeat 2 38 0 575 247 44 19 chr1 251228265 251228423 -30965241 + MLT1J2 LTR MaLR 52 213 -237 2294 95 3 0 chr1 251228474 251228780 -30964884 + AluSc SINE Alu 1 307 -2 413 144 122 0 chr1 251229263 251229353 -30964311 + FLAM_A SINE Alu 40 140 -2 2109 139 3 0 chr1 251229366 251229676 -30963988 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr1 251229710 251229742 -30963922 + AT_rich Low_complexity Low_complexity 1 32 0 442 269 0 57 chr1 251229821 251229962 -30963702 - FLAM_A SINE Alu 0 133 1 1493 171 0 15 chr1 251230657 251230920 -30962744 - AluJo SINE Alu 0 312 54 289 315 134 20 chr1 251231012 251231317 -30962347 - HAL1b LINE L1 -697 651 312 256 301 18 44 chr1 251231484 251231597 -30962067 - L2 LINE L2 0 3313 3204 222 37 0 0 chr1 251231797 251231824 -30961840 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1539 167 29 21 chr1 251231826 251232107 -30961557 - AluJb SINE Alu -29 283 1 4462 207 38 23 chr1 251232148 251233851 -30959813 - L1MB7 LINE L1 -69 6115 4381 2189 119 0 0 chr1 251233859 251234152 -30959512 - AluSc SINE Alu -8 301 9 252 259 19 70 chr1 251234167 251234325 -30959339 - L1MC4 LINE L1 -1 8041 7892 386 284 108 20 chr1 251234743 251234891 -30958773 - L2 LINE L2 -2 3311 3151 582 257 99 20 chr1 251234892 251235094 -30958570 + MER46C DNA MER2_type 1 218 -120 42 65 0 0 chr1 251235185 251235262 -30958402 + AT_rich Low_complexity Low_complexity 1 77 0 594 79 0 0 chr1 251235267 251235343 -30958321 + AluY SINE Alu 218 293 -18 205 279 32 117 chr1 251235525 251235679 -30957985 - L2 LINE L2 -267 3046 2906 26 0 0 0 chr1 251236649 251236675 -30956989 + AT_rich Low_complexity Low_complexity 1 26 0 180 167 42 0 chr1 251238792 251238864 -30954800 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 24 53 0 0 chr1 251238983 251239021 -30954643 + AT_rich Low_complexity Low_complexity 1 38 0 664 198 68 23 chr1 251239127 251239304 -30954360 + MER53 DNA DNA 2 186 -3 34 24 0 0 chr1 251242066 251242107 -30951557 + AT_rich Low_complexity Low_complexity 1 41 0 991 259 123 35 chr1 251242557 251243043 -30950621 + MARNA DNA Mariner 42 570 -16 1695 174 0 37 chr1 251243496 251243818 -30949846 + AluJo SINE Alu 1 310 -2 764 182 0 0 chr1 251243957 251244100 -30949564 + L1PA16 LINE L1 6021 6163 -3 477 296 58 37 chr1 251245332 251245521 -30948143 + MIR3 SINE MIR 6 198 -10 395 286 10 0 chr1 251245686 251245784 -30947880 - MIR SINE MIR -115 147 49 2494 107 28 6 chr1 251246271 251246625 -30947039 + THE1B LTR MaLR 1 362 -2 254 348 44 29 chr1 251246891 251247095 -30946569 - L2 LINE L2 -457 2857 2651 2205 213 94 66 chr1 251247223 251247612 -30946052 + MER45B DNA AcHobo 15 429 -611 1965 95 6 77 chr1 251247612 251247949 -30945715 + AluSp SINE Alu 1 313 0 2205 213 94 66 chr1 251247949 251248165 -30945499 + MER45B DNA AcHobo 429 637 -403 7652 1 1 0 chr1 251248167 251249020 -30944644 + L1HS LINE L1 5301 6154 -1 2006 194 17 2 chr1 251249020 251249422 -30944242 + MER45B DNA AcHobo 633 1040 0 1016 172 55 92 chr1 251249499 251249825 -30943839 + MER5C DNA MER1_type 7 320 -4 466 276 46 33 chr1 251250231 251250383 -30943281 - MER5B DNA MER1_type -4 174 21 746 178 120 37 chr1 251250453 251250644 -30943020 - MER45B DNA AcHobo -4 1036 830 643 238 68 0 chr1 251250817 251250964 -30942700 + MIR SINE MIR 42 198 -64 385 222 0 0 chr1 251250964 251251027 -30942637 + Tigger3(Golem) DNA MER2_type 1 63 -2966 * 672 168 76 0 chr1 251251023 251251142 -30942522 + Tigger3(Golem) DNA MER2_type 2911 3038 0 236 224 0 35 chr1 251251147 251251205 -30942459 + MIR SINE MIR 202 257 -5 2556 58 0 6 chr1 251251223 251251535 -30942129 - AluY SINE Alu -1 310 1 2182 92 10 7 chr1 251252077 251252371 -30941293 + AluSq SINE Alu 1 295 -18 249 340 146 53 chr1 251252386 251253119 -30940545 + L2 LINE L2 2033 2833 -481 204 179 0 0 chr1 251255123 251255162 -30938502 + T-rich Low_complexity Low_complexity 1 39 0 251 274 53 53 chr1 251256642 251256737 -30936927 + MIR SINE MIR 161 255 -7 2091 125 3 0 chr1 251257578 251257881 -30935783 - AluSx SINE Alu -6 306 3 2399 55 0 7 chr1 251257913 251258206 -30935458 - AluY SINE Alu -20 291 1 1194 251 45 32 chr1 251258229 251258631 -30935033 - L1ME1 LINE L1 -5 6161 5755 3976 177 58 12 chr1 251258633 251259379 -30934285 - MER54A LTR ERVL -1 900 121 868 132 0 0 chr1 251259380 251259501 -30934163 + FLAM_C SINE Alu 1 121 -22 21 0 0 0 chr1 251259501 251259522 -30934142 + AT_rich Low_complexity Low_complexity 1 21 0 648 189 23 0 chr1 251259560 251259692 -30933972 - MER54A LTR ERVL -764 137 3 1427 191 102 59 chr1 251259709 251260149 -30933515 - MLT1C LTR MaLR 0 467 9 752 261 84 0 chr1 251260158 251260419 -30933245 - L1ME1 LINE L1 -418 5748 5466 772 254 62 4 chr1 251260420 251260680 -30932984 - L1ME1 LINE L1 -865 5281 5007 905 196 30 0 chr1 251260717 251260885 -30932779 - FAM SINE Alu -1 174 2 1550 204 66 42 chr1 251260922 251261300 -30932364 - MSTD LTR MaLR -4 392 6 1126 259 14 18 chr1 251261438 251261720 -30931944 + MLT1H1 LTR MaLR 275 555 0 37 0 0 0 chr1 251261798 251261835 -30931829 + AT_rich Low_complexity Low_complexity 1 37 0 248 224 30 0 chr1 251262288 251262355 -30931309 + (TA)n Simple_repeat Simple_repeat 2 70 0 182 327 106 10 chr1 251262938 251263042 -30930622 + MIR SINE MIR 101 214 -48 2013 152 64 0 chr1 251263106 251263449 -30930215 + MLT1A1 LTR MaLR 1 365 0 4278 194 41 23 chr1 251263774 251264612 -30929052 + MER21B LTR ERV1 2 854 -9 243 186 0 51 chr1 251264814 251264873 -30928791 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 219 150 0 0 chr1 251265217 251265257 -30928407 + (TA)n Simple_repeat Simple_repeat 2 41 0 478 322 120 28 chr1 251265756 251266039 -30927625 - L2 LINE L2 0 3313 3005 6060 24 0 0 chr1 251266042 251266775 -30926889 + L1PA3 LINE L1 5435 6167 0 411 341 145 31 chr1 251266777 251267129 -30926535 - L2 LINE L2 -339 2975 2584 322 361 83 13 chr1 251267170 251267483 -30926181 + L1MEc LINE L1 781 1115 -6023 574 283 88 69 chr1 251267891 251268479 -30925185 + L1MEc LINE L1 1331 1920 -4935 1183 275 124 6 chr1 251268539 251269160 -30924504 + L1MEc LINE L1 3851 4544 -2413 665 256 33 40 chr1 251269166 251269439 -30924225 + L1ME2 LINE L1 5814 6084 -80 286 222 0 0 chr1 251269493 251269565 -30924099 + L1ME2 LINE L1 6093 6164 0 213 222 0 0 chr1 251270766 251270829 -30922835 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 43 0 0 chr1 251270916 251270939 -30922725 + AT_rich Low_complexity Low_complexity 1 23 0 1183 178 13 13 chr1 251271094 251271319 -30922345 - AluJb SINE Alu -7 305 81 268 259 7 72 chr1 251271319 251271458 -30922206 - HAL1b LINE L1 -678 670 541 2198 113 3 3 chr1 251271462 251271771 -30921893 - AluSx SINE Alu -3 309 1 2385 52 0 3 chr1 251272070 251272360 -30921304 + AluY SINE Alu 21 309 -2 210 139 0 0 chr1 251272365 251272401 -30921263 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 841 246 17 38 chr1 251272448 251272596 -30921068 - L2 LINE L2 -4 3309 3166 313 221 13 0 chr1 251272596 251272673 -30920991 - MER116 DNA Mariner -1 79 2 841 246 17 38 chr1 251272673 251272764 -30920900 - L2 LINE L2 -147 3166 3075 396 324 17 45 chr1 251273177 251273295 -30920369 + MER5B DNA MER1_type 2 115 -63 2287 117 61 0 chr1 251273295 251273638 -30920026 - THE1B LTR MaLR 0 364 1 396 324 17 45 chr1 251273638 251273695 -30919969 + MER5B DNA MER1_type 115 172 -6 * 626 216 37 62 chr1 251273677 251273839 -30919825 - MER5B DNA MER1_type -20 158 1 450 199 32 102 chr1 251273930 251274116 -30919548 - MER34 LTR ERV1 0 542 370 280 218 40 59 chr1 251274124 251274225 -30919439 - MER34C LTR ERV1 -451 134 36 641 270 137 0 chr1 251274268 251274494 -30919170 - MIR SINE MIR -3 259 3 1724 179 0 3 chr1 251274530 251274841 -30918823 - AluJb SINE Alu 0 310 1 240 217 17 33 chr1 251275380 251275440 -30918224 - MLT1K LTR MaLR -418 170 112 232 333 123 10 chr1 251277883 251278087 -30915577 + L2 LINE L2 2825 3051 -221 352 334 63 67 chr1 251278363 251278662 -30915002 + L3 LINE CR1 352 649 -928 494 232 0 0 chr1 251278723 251278818 -30914846 - MIR SINE MIR -55 207 113 268 365 19 0 chr1 251278831 251278938 -30914726 + L3 LINE CR1 681 789 -788 303 275 150 0 chr1 251280149 251280269 -30913395 - L1MEc LINE L1 -2698 3946 3809 1914 292 120 48 chr1 251280275 251281183 -30912481 + L1M4b LINE L1 10 1204 -5655 339 295 9 9 chr1 251281220 251281332 -30912332 + L1M4b LINE L1 1077 1188 -5667 655 214 36 71 chr1 251281649 251281873 -30911791 + L1M4b LINE L1 1206 1421 -5438 * 657 171 79 0 chr1 251281871 251282011 -30911653 + L1MC3 LINE L1 7624 7774 -11 1458 249 67 55 chr1 251282019 251282937 -30910727 + L1M4b LINE L1 1615 2818 -4320 198 0 0 0 chr1 251282941 251282963 -30910701 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1314 219 36 15 chr1 251282966 251283355 -30910309 - L1MEc LINE L1 -2815 3829 3433 824 222 44 20 chr1 251283395 251283647 -30910017 - L1M4 LINE L1 -4988 1554 1297 2268 78 0 3 chr1 251283658 251283941 -30909723 - AluY SINE Alu -15 296 15 373 193 102 0 chr1 251283941 251284029 -30909635 - L1MC3 LINE L1 -11 7774 7678 362 272 83 22 chr1 251284033 251284213 -30909451 - L1MEc LINE L1 -3588 3056 2866 190 295 105 21 chr1 251284460 251284555 -30909109 + MIR3 SINE MIR 14 116 -92 278 336 115 39 chr1 251284703 251285071 -30908593 + L2 LINE L2 2682 3078 -194 261 0 0 0 chr1 251285922 251285951 -30907713 + (CA)n Simple_repeat Simple_repeat 2 30 0 521 167 12 56 chr1 251286353 251286592 -30907072 + AluJ SINE Alu 1 296 -16 1598 184 0 41 chr1 251287092 251287408 -30906256 + AluJb SINE Alu 1 303 -9 3729 139 15 17 chr1 251287416 251288070 -30905594 + L1PA16 LINE L1 5509 6161 -5 202 300 0 38 chr1 251288486 251288566 -30905098 + MIR SINE MIR 56 132 -130 * 606 222 27 54 chr1 251288562 251288747 -30904917 - L2 LINE L2 -2 3311 3132 3472 286 51 16 chr1 251288839 251289579 -30904085 - L2 LINE L2 -411 2903 2107 2157 114 0 10 chr1 251289579 251289886 -30903778 + AluY SINE Alu 1 304 -7 3472 286 51 16 chr1 251289886 251290296 -30903368 - L2 LINE L2 -1207 2107 1713 312 299 102 72 chr1 251290461 251290835 -30902829 - MLT1K LTR MaLR -3 585 201 234 174 0 0 chr1 251291076 251291122 -30902542 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 814 239 30 66 chr1 251291323 251291786 -30901878 + LTR28 LTR ERV1 1 1229 -46 1152 266 110 55 chr1 251291940 251292538 -30901126 - L1MEc LINE L1 -4121 2523 1959 960 201 14 64 chr1 251292538 251292757 -30900907 + MER63A DNA MER1_type 1 208 -2 1152 266 110 55 chr1 251292757 251293276 -30900388 - L1MEc LINE L1 -4685 1959 1373 202 330 93 10 chr1 251293290 251293387 -30900277 + MIR SINE MIR 132 236 -26 291 286 78 0 chr1 251293499 251293576 -30900088 - MIR3 SINE MIR -13 195 113 253 205 103 51 chr1 251293625 251293703 -30899961 + L2 LINE L2 3232 3313 0 527 222 68 62 chr1 251293737 251293877 -30899787 - MER104 DNA Tc2 -1718 180 42 1274 164 7 152 chr1 251293877 251294037 -30899627 - MLT1A1 LTR MaLR 0 365 184 2078 104 0 80 chr1 251294037 251294231 -30899433 - AluSp SINE Alu -3 310 153 225 0 0 0 chr1 251294231 251294256 -30899408 + (TA)n Simple_repeat Simple_repeat 2 26 0 2078 104 0 80 chr1 251294256 251294398 -30899266 - AluSp SINE Alu -160 153 1 1274 164 7 152 chr1 251294398 251294494 -30899170 - MLT1A1 LTR MaLR -181 184 190 2158 114 3 3 chr1 251294494 251294793 -30898871 - AluY SINE Alu -7 304 6 1274 164 7 152 chr1 251294793 251294957 -30898707 - MLT1A1 LTR MaLR -174 191 5 527 222 68 62 chr1 251294957 251294992 -30898672 - MER104 DNA Tc2 -1856 42 4 253 303 64 64 chr1 251295753 251295862 -30897802 - L2 LINE L2 -39 3233 3125 1608 97 18 0 chr1 251297028 251297254 -30896410 - MER30 DNA MER1_type 0 230 1 476 253 109 39 chr1 251297287 251297336 -30896328 + Charlie7 DNA MER1_type 77 121 -2491 754 164 15 22 chr1 251297336 251297470 -30896194 + FLAM_A SINE Alu 1 133 0 476 253 109 39 chr1 251297470 251297649 -30896015 + Charlie7 DNA MER1_type 121 321 -2291 295 148 0 19 chr1 251297647 251297701 -30895963 + Charlie7 DNA MER1_type 1428 1480 -1132 * 1738 159 7 35 chr1 251297920 251298239 -30895425 - AluJo SINE Alu 0 311 1 253 309 52 22 chr1 251298241 251298377 -30895287 - L1MC4a LINE L1 -1872 5936 5797 932 184 14 5 chr1 251298377 251298600 -30895064 - L1MA7 LINE L1 0 6291 6067 1152 138 0 0 chr1 251298600 251298774 -30894890 + L1M2 LINE L1 5492 5665 -626 * 1255 247 16 10 chr1 251298771 251299075 -30894589 - L1MC4a LINE L1 -2007 5801 5496 1211 190 137 19 chr1 251299075 251299485 -30894179 + Charlie7 DNA MER1_type 2090 2547 -65 560 294 106 47 chr1 251300348 251300753 -30892911 - L1ME4a LINE L1 -41 6080 5652 568 247 99 62 chr1 251300990 251301342 -30892322 - L1ME4a LINE L1 -57 6064 5700 331 287 88 60 chr1 251301424 251301755 -30891909 - L1MC4a LINE L1 -806 5340 5001 203 0 0 36 chr1 251302127 251302155 -30891509 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2373 75 0 3 chr1 251302165 251302471 -30891193 - AluY SINE Alu -2 309 5 1560 173 35 0 chr1 251302968 251303280 -30890384 - MER33 DNA MER1_type -1 323 1 47 78 0 0 chr1 251303812 251303915 -30889749 + AT_rich Low_complexity Low_complexity 1 103 0 232 341 88 0 chr1 251304808 251304899 -30888765 - MIR SINE MIR -107 155 57 298 311 29 10 chr1 251305059 251305162 -30888502 + MIR SINE MIR 122 226 -36 1882 155 0 7 chr1 251305351 251305642 -30888022 + AluJo SINE Alu 1 289 -23 310 20 0 41 chr1 251305645 251305694 -30887970 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 879 209 6 0 chr1 251305700 251305863 -30887801 + U1 snRNA snRNA 1 164 -1 42 20 0 0 chr1 251305863 251305912 -30887752 + AT_rich Low_complexity Low_complexity 1 49 0 2138 117 0 3 chr1 251306093 251306391 -30887273 - AluSp SINE Alu -16 297 1 717 283 74 22 chr1 251306508 251306777 -30886887 + L1MC3 LINE L1 57 339 -6057 814 288 0 23 chr1 251306996 251307211 -30886453 + MER58C DNA MER1_type 1 210 -5 1331 259 90 23 chr1 251307215 251307633 -30886031 + L1MC3 LINE L1 660 1049 -5347 2057 146 0 10 chr1 251307633 251307934 -30885730 + AluSx SINE Alu 1 298 -14 1331 259 90 23 chr1 251307934 251308260 -30885404 + L1MC3 LINE L1 1049 1454 -4942 2246 105 3 0 chr1 251308281 251308587 -30885077 + AluSg1 SINE Alu 1 307 -2 180 0 0 0 chr1 251308687 251308707 -30884957 + (TA)n Simple_repeat Simple_repeat 1 20 0 1386 215 36 36 chr1 251308731 251309149 -30884515 + L1MC3 LINE L1 4405 4822 -1393 597 188 101 0 chr1 251309144 251309282 -30884382 + L1MC3 LINE L1 5894 6045 -1809 * 997 190 5 45 chr1 251309282 251309531 -30884133 + AluSg/x SINE Alu 85 312 0 2867 173 172 97 chr1 251309531 251310398 -30883266 + L1MC3 LINE L1 6037 6968 -886 411 253 99 11 chr1 251310444 251310592 -30883072 + L1ME1 LINE L1 3587 3755 -2391 2114 138 0 0 chr1 251310592 251310889 -30882775 + AluJb SINE Alu 1 297 -15 411 253 99 11 chr1 251310889 251310922 -30882742 + L1ME1 LINE L1 3755 3784 -2362 280 234 0 16 chr1 251310923 251310987 -30882677 + MLT2F LTR ERVL 1 63 -600 885 137 7 7 chr1 251310995 251311179 -30882485 - AluY SINE Alu 0 319 136 1056 310 70 31 chr1 251311191 251311762 -30881902 + MLT2F LTR ERVL 71 663 0 1803 255 24 18 chr1 251311762 251312308 -30881356 + L1ME1 LINE L1 3781 4329 -1817 2377 234 81 47 chr1 251312311 251313066 -30880598 + L1ME1 LINE L1 4391 5188 -958 1301 215 66 33 chr1 251313066 251313368 -30880296 + AluJb SINE Alu 1 312 0 2377 234 81 47 chr1 251313368 251313592 -30880072 + L1ME1 LINE L1 5188 5403 -743 364 217 12 0 chr1 251313614 251313697 -30879967 + L1ME1 LINE L1 5691 5774 -392 2434 147 52 12 chr1 251313698 251314072 -30879592 - MER47B DNA MER2_type -1905 418 25 2358 146 24 52 chr1 251314072 251314572 -30879092 - MER66B LTR ERV1 0 486 1 2434 147 52 12 chr1 251314572 251314599 -30879065 - MER47B DNA MER2_type -2298 25 1 728 252 145 38 chr1 251314605 251314950 -30878714 + L1ME1 LINE L1 5780 6161 -5 24 0 0 0 chr1 251314951 251314975 -30878689 + AT_rich Low_complexity Low_complexity 1 24 0 1045 105 0 46 chr1 251315282 251315435 -30878229 + AluJb SINE Alu 1 146 -166 361 275 77 123 chr1 251315443 251315818 -30877846 - L1M4 LINE L1 -5667 1188 831 365 276 46 65 chr1 251316006 251316223 -30877441 - L1M4 LINE L1 -6634 225 13 1532 174 21 122 chr1 251316309 251316500 -30877164 + MLT1C LTR MaLR 3 212 -255 2273 112 0 3 chr1 251316500 251316812 -30876852 + AluSx SINE Alu 1 311 -1 1532 174 21 122 chr1 251316812 251317137 -30876527 + MLT1C LTR MaLR 212 467 0 340 343 66 20 chr1 251317142 251317340 -30876324 + L1M4 LINE L1 2576 2782 -3364 258 287 21 0 chr1 251317373 251317467 -30876197 + L1P5 LINE L1 5356 5451 -705 * 13959 175 39 6 chr1 251317438 251321344 -30872320 + L1PB1 LINE L1 2459 6487 -380 241 109 0 55 chr1 251321344 251321399 -30872265 - LTR66 LTR ERVL -165 445 394 432 208 0 0 chr1 251321399 251321505 -30872159 + (CA)n Simple_repeat Simple_repeat 2 107 0 2493 82 23 3 chr1 251321505 251321857 -30871807 + L1PB1 LINE L1 6507 6865 -2 258 32 0 0 chr1 251321902 251321933 -30871731 + (GA)n Simple_repeat Simple_repeat 1 31 0 998 288 68 47 chr1 251321949 251322408 -30871256 + L1ME3A LINE L1 1296 1773 -4623 2221 119 0 7 chr1 251322408 251322718 -30870946 + AluSq SINE Alu 1 308 -5 998 288 68 47 chr1 251322718 251322894 -30870770 + L1ME3A LINE L1 1773 1944 -4452 186 43 0 0 chr1 251323227 251323250 -30870414 + (TTG)n Simple_repeat Simple_repeat 2 24 0 201 304 63 13 chr1 251323507 251323586 -30870078 - MIR SINE MIR -159 103 21 2580 140 27 29 chr1 251323652 251324096 -30869568 - MSTB2 LTR MaLR 0 457 15 2111 255 103 31 chr1 251324284 251324461 -30869203 + L1ME3A LINE L1 3842 4005 -2234 1515 174 106 3 chr1 251324461 251324743 -30868921 + AluJo SINE Alu 1 311 -1 2111 255 103 31 chr1 251324743 251325556 -30868108 + L1ME3A LINE L1 4005 4758 -1481 1552 153 62 62 chr1 251325556 251325928 -30867736 - THE1C LTR MaLR -3 372 1 2111 255 103 31 chr1 251325928 251326962 -30866702 + L1ME3A LINE L1 4758 6009 -230 23 33 0 0 chr1 251327868 251327898 -30865766 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr1 251329762 251329798 -30863866 + AT_rich Low_complexity Low_complexity 1 36 0 195 235 0 39 chr1 251330348 251330399 -30863265 + L2 LINE L2 3256 3304 -9 21 36 0 0 chr1 251330712 251330740 -30862924 + AT_rich Low_complexity Low_complexity 1 28 0 367 346 73 48 chr1 251330945 251331217 -30862447 + L3b LINE CR1 1250 1528 -55 1772 133 14 18 chr1 251331488 251331766 -30861898 - AluJb SINE Alu -24 288 12 210 37 0 0 chr1 251332829 251332856 -30860808 + (TC)n Simple_repeat Simple_repeat 2 28 0 238 358 150 20 chr1 251333748 251334002 -30859662 + MLT1K LTR MaLR 108 394 -194 1330 111 106 0 chr1 251334476 251334683 -30858981 - MER30 DNA MER1_type 0 230 2 347 308 157 0 chr1 251335400 251335559 -30858105 - MER5A DNA MER1_type -5 184 1 23 33 0 0 chr1 251337478 251337508 -30856156 + AT_rich Low_complexity Low_complexity 1 30 0 304 275 94 91 chr1 251340715 251341013 -30852651 + L1M2 LINE L1 652 950 -5899 28 0 0 0 chr1 251343200 251343228 -30850436 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr1 251345849 251345881 -30847783 + AT_rich Low_complexity Low_complexity 1 32 0 27 73 0 0 chr1 251346423 251346478 -30847186 + AT_rich Low_complexity Low_complexity 1 55 0 23 33 0 0 chr1 251348110 251348140 -30845524 + AT_rich Low_complexity Low_complexity 1 30 0 230 231 0 0 chr1 251349548 251349600 -30844064 + L2 LINE L2 3262 3313 0 630 266 41 0 chr1 251350518 251350687 -30842977 + L2 LINE L2 3111 3286 -27 385 384 28 0 chr1 251350772 251350949 -30842715 - L3 LINE CR1 -22 1555 1374 182 325 60 36 chr1 251351009 251351092 -30842572 - L3 LINE CR1 -202 1375 1291 261 0 0 0 chr1 251351121 251351150 -30842514 + (CA)n Simple_repeat Simple_repeat 2 30 0 226 295 16 0 chr1 251351199 251351260 -30842404 - L2 LINE L2 -74 3198 3137 842 238 153 65 chr1 251352406 251352928 -30840736 + MLT1G LTR MaLR 23 590 0 272 217 0 29 chr1 251353253 251353322 -30840342 - MLT1K LTR MaLR 0 588 522 1969 102 95 0 chr1 251353349 251353623 -30840041 + AluSq SINE Alu 1 300 -13 1229 92 6 23 chr1 251353623 251353797 -30839867 + AluSg/x SINE Alu 132 302 -8 381 263 20 10 chr1 251354002 251354101 -30839563 - L2 LINE L2 0 3313 3214 28 0 0 0 chr1 251354201 251354229 -30839435 + AT_rich Low_complexity Low_complexity 1 28 0 238 230 27 14 chr1 251354262 251354336 -30839328 - MLT1L LTR MaLR -536 79 5 21 82 0 0 chr1 251354428 251354477 -30839187 + AT_rich Low_complexity Low_complexity 1 49 0 450 260 48 48 chr1 251357191 251357399 -30836265 - LTR16C LTR ERVL -31 460 253 264 231 77 0 chr1 251357814 251357905 -30835759 - L1MA10 LINE L1 -47 6287 6190 223 186 0 0 chr1 251357946 251357989 -30835675 + (TTA)n Simple_repeat Simple_repeat 1 43 0 514 309 81 27 chr1 251358068 251358291 -30835373 + MIR SINE MIR 13 247 -15 346 326 54 7 chr1 251358686 251358849 -30834815 + MER5B DNA MER1_type 1 183 -6 2390 144 36 10 chr1 251358985 251359402 -30834262 - MSTA LTR MaLR 0 428 1 287 309 140 29 chr1 251359971 251360107 -30833557 + L2 LINE L2 3122 3272 0 1839 159 0 7 chr1 251360194 251360477 -30833187 + AluSx SINE Alu 1 281 -31 200 57 0 29 chr1 251360646 251360681 -30832983 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 225 312 58 97 chr1 251360786 251361094 -30832570 + L2 LINE L2 2945 3240 -32 349 250 142 0 chr1 251361151 251361271 -30832393 - MIR SINE MIR -7 255 119 223 259 62 0 chr1 251361323 251361404 -30832260 - MIR SINE MIR -58 204 119 841 142 8 15 chr1 251361659 251361793 -30831871 - FLAM_C SINE Alu 0 133 1 1178 186 23 19 chr1 251361803 251362067 -30831597 - L1MD1 LINE L1 0 6242 5978 1802 149 36 0 chr1 251362116 251362412 -30831252 + AluJb SINE Alu 1 306 0 246 213 55 31 chr1 251364885 251365012 -30828652 + (TATATG)n Simple_repeat Simple_repeat 5 134 0 1936 164 3 10 chr1 251365142 251365452 -30828212 - AluSx SINE Alu -4 308 1 1348 268 30 6 chr1 251366249 251366615 -30827049 - MLT1H1 LTR MaLR 0 555 181 306 301 37 55 chr1 251367384 251367432 -30826232 - MIR SINE MIR 0 262 215 756 199 69 56 chr1 251367432 251367648 -30826016 - MER20 DNA MER1_type 0 219 1 306 301 37 55 chr1 251367648 251367762 -30825902 - MIR SINE MIR -47 215 103 225 285 85 11 chr1 251368283 251368405 -30825259 + MIR3 SINE MIR 49 182 -26 1856 140 3 48 chr1 251368659 251368974 -30824690 + AluJb SINE Alu 1 301 -11 592 172 0 90 chr1 251369394 251369539 -30824125 + FLAM_A SINE Alu 1 132 -1 21 0 0 0 chr1 251369544 251369565 -30824099 + AT_rich Low_complexity Low_complexity 1 21 0 378 277 84 66 chr1 251371148 251371361 -30822303 + MIR SINE MIR 45 261 -1 1882 131 50 39 chr1 251371483 251371843 -30821821 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr1 251374965 251374989 -30818675 + AT_rich Low_complexity Low_complexity 1 24 0 475 312 72 14 chr1 251375059 251375280 -30818384 - MIR SINE MIR -1 261 28 351 310 93 8 chr1 251375570 251375828 -30817836 + L1MC4a LINE L1 5637 5916 -1892 2338 86 3 0 chr1 251375834 251376126 -30817538 - AluY SINE Alu -18 293 1 349 285 76 41 chr1 251376366 251376538 -30817126 + MIR SINE MIR 23 200 -62 252 0 0 0 chr1 251377024 251377052 -30816612 + (A)n Simple_repeat Simple_repeat 1 28 0 440 0 36 0 chr1 251379154 251379209 -30814455 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr1 251380052 251380073 -30813591 + AT_rich Low_complexity Low_complexity 1 21 0 203 298 18 70 chr1 251380574 251380688 -30812976 + MIR SINE MIR 100 207 -55 352 358 32 16 chr1 251380721 251380844 -30812820 + L2 LINE L2 3147 3271 -1 1395 236 68 8 chr1 251381079 251381544 -30812120 + L1M3e LINE L1 -455 134 -6434 908 133 0 208 chr1 251381540 251381857 -30811807 + L1M3e LINE L1 1385 1635 -4933 * 268 132 0 0 chr1 251381865 251381918 -30811746 - MER69 DNA AcHobo -93 2433 2381 342 211 57 20 chr1 251381933 251382131 -30811533 + L1M3e LINE L1 1298 1810 -4765 348 391 76 0 chr1 251382286 251382483 -30811181 - L2 LINE L2 -214 3058 2847 559 171 147 47 chr1 251382485 251382655 -30811009 - MER20 DNA MER1_type -2 217 31 220 322 70 0 chr1 251382799 251382914 -30810750 - L2 LINE L2 -670 2644 2522 908 146 0 7 chr1 251384382 251384519 -30809145 + AluJo SINE Alu 1 136 -176 2191 125 0 0 chr1 251384606 251384903 -30808761 - AluSx SINE Alu -10 302 6 261 103 0 0 chr1 251385825 251385864 -30807800 + L1PB3 LINE L1 5964 6002 -152 689 154 8 17 chr1 251385864 251385981 -30807683 + FLAM_C SINE Alu 1 116 -17 234 0 0 0 chr1 251385981 251386007 -30807657 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1803 167 10 7 chr1 251386086 251386509 -30807155 + AluJb SINE Alu 5 428 0 691 143 48 16 chr1 251386510 251386636 -30807028 + L1PB3 LINE L1 6022 6151 -3 22 0 0 0 chr1 251386705 251386727 -30806937 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr1 251386773 251386808 -30806856 + AT_rich Low_complexity Low_complexity 1 35 0 1895 140 35 7 chr1 251386815 251387101 -30806563 + AluSx SINE Alu 1 294 -18 243 269 60 0 chr1 251387139 251387206 -30806458 + L2 LINE L2 3241 3311 -2 3373 51 42 5 chr1 251387821 251388249 -30805415 - MLT2A1 LTR ERVL 0 444 1 398 334 172 10 chr1 251388255 251388569 -30805095 + L2 LINE L2 121 485 -2829 191 387 9 9 chr1 251388718 251388829 -30804835 - MER5B DNA MER1_type -3 175 65 235 302 70 16 chr1 251389002 251389131 -30804533 + L1MDa LINE L1 426 561 -5979 300 208 14 0 chr1 251389331 251389403 -30804261 + L1MDa LINE L1 990 1062 -5481 1960 150 0 10 chr1 251389480 251389774 -30803890 + AluJo SINE Alu 1 291 -21 2061 163 59 8 chr1 251389793 251390167 -30803497 - MSTD LTR MaLR 0 396 4 4383 219 68 37 chr1 251390169 251391574 -30802090 + L1MDa LINE L1 1072 2548 -3992 1948 175 0 0 chr1 251391574 251391871 -30801793 - AluJo SINE Alu -15 297 1 4383 219 68 37 chr1 251391871 251392215 -30801449 + L1MDa LINE L1 2548 2880 -3660 1759 166 3 14 chr1 251392215 251392510 -30801154 + AluJb SINE Alu 1 292 -20 195 42 0 0 chr1 251392510 251392534 -30801130 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 215 188 58 58 chr1 251392577 251392646 -30801018 + MIR SINE MIR 93 161 -101 205 261 0 22 chr1 251392638 251392684 -30800980 + L2 LINE L2 3210 3254 -18 * 219 313 64 0 chr1 251393033 251393156 -30800508 - MIR SINE MIR -52 156 45 2415 47 0 7 chr1 251393390 251393688 -30799976 - AluY SINE Alu -15 296 1 1223 321 113 40 chr1 251393719 251394139 -30799525 + L2 LINE L2 1842 2230 -1083 1696 172 95 21 chr1 251394139 251394477 -30799187 + MLT1A1 LTR MaLR 3 365 0 1223 321 113 40 chr1 251394477 251395144 -30798520 + L2 LINE L2 2230 3073 -240 2142 110 43 15 chr1 251395144 251395472 -30798192 + MER1B DNA MER1_type 1 337 0 1223 321 113 40 chr1 251395472 251395689 -30797975 + L2 LINE L2 3073 3273 -40 4282 113 8 0 chr1 251395689 251396351 -30797313 + L1MA3 LINE L1 5638 6304 -1 354 145 72 0 chr1 251397172 251397241 -30796423 + MLT1D LTR MaLR 3 76 -429 2013 140 28 22 chr1 251397241 251397344 -30796320 + MER47A DNA MER2_type 1 102 -2221 2511 137 28 37 chr1 251397344 251397775 -30795889 + MSTC LTR MaLR 1 427 -1 2013 140 28 22 chr1 251397775 251398035 -30795629 + MER47A DNA MER2_type 102 366 0 1605 194 60 32 chr1 251398039 251398442 -30795222 + MLT1D LTR MaLR 79 492 -13 2971 219 59 44 chr1 251398524 251398776 -30794888 - L1ME1 LINE L1 -7 6228 5981 1927 147 0 42 chr1 251398776 251399088 -30794576 + AluJo SINE Alu 1 299 -13 2971 219 59 44 chr1 251399088 251400156 -30793508 - L1ME1 LINE L1 -254 5981 4875 393 22 0 0 chr1 251400156 251400202 -30793462 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 2971 219 59 44 chr1 251400202 251400633 -30793031 - L1ME1 LINE L1 -1360 4875 4452 732 204 138 29 chr1 251400633 251400873 -30792791 + LTR40b LTR ERVL 197 462 0 1770 254 29 10 chr1 251400887 251401379 -30792285 - L1ME1 LINE L1 -5844 552 52 1815 157 7 10 chr1 251401669 251401974 -30791690 - AluJb SINE Alu -8 304 1 2249 85 0 35 chr1 251402462 251402778 -30790886 - AluSg SINE Alu -5 305 1 636 220 52 50 chr1 251403116 251403339 -30790325 - MIR SINE MIR -6 256 38 231 268 0 18 chr1 251404508 251404564 -30789100 - L2 LINE L2 -8 3305 3251 583 158 129 0 chr1 251406057 251406158 -30787506 + FLAM_C SINE Alu 2 115 -28 2433 129 3 3 chr1 251406158 251406515 -30787149 + THE1B LTR MaLR 2 358 -6 235 294 0 47 chr1 251406548 251406633 -30787031 + HAL1b LINE L1 834 914 -434 21 0 0 0 chr1 251406652 251406673 -30786991 + AT_rich Low_complexity Low_complexity 1 21 0 456 260 141 25 chr1 251406712 251407066 -30786598 + HAL1b LINE L1 954 1348 0 692 287 173 34 chr1 251408505 251409013 -30784651 + L1ME4a LINE L1 5494 6072 -49 349 316 66 16 chr1 251409083 251409314 -30784350 + L1MC2 LINE L1 5625 5864 -260 231 139 0 0 chr1 251409503 251409539 -30784125 - U2 snRNA snRNA -152 36 1 2249 101 3 0 chr1 251409546 251409842 -30783822 - AluSp SINE Alu -16 297 1 227 283 130 11 chr1 251410184 251410276 -30783388 - MARNA DNA Mariner -477 109 7 981 99 0 0 chr1 251410427 251410558 -30783106 + AluSg/x SINE Alu 162 292 -20 453 292 114 40 chr1 251411920 251412122 -30781542 - MIR SINE MIR -25 237 21 298 211 35 0 chr1 251413501 251413558 -30780106 + MER5A DNA MER1_type 48 106 -83 2145 111 70 3 chr1 251414606 251414947 -30778717 + THE1B LTR MaLR 1 364 0 298 319 229 39 chr1 251415204 251416150 -30777514 + L2 LINE L2 1560 2685 -629 297 229 14 0 chr1 251416333 251416403 -30777261 + MER58B DNA MER1_type 42 112 -229 1433 167 87 14 chr1 251416403 251416789 -30776875 + AluJo SINE Alu 3 408 0 798 193 57 70 chr1 251416789 251417017 -30776647 + MER58B DNA MER1_type 102 326 -15 302 263 25 12 chr1 251417195 251417275 -30776389 - L2 LINE L2 -9 3304 3224 35 24 0 0 chr1 251418762 251418804 -30774860 + AT_rich Low_complexity Low_complexity 1 42 0 240 59 0 0 chr1 251418812 251418846 -30774818 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1853 161 7 0 chr1 251418848 251419128 -30774536 - AluJb SINE Alu -30 282 1 931 196 6 0 chr1 251419247 251419420 -30774244 - FAM SINE Alu 0 175 2 227 87 43 0 chr1 251419557 251419603 -30774061 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr1 251419615 251419651 -30774013 + AT_rich Low_complexity Low_complexity 1 36 0 2698 176 77 15 chr1 251420567 251420978 -30772686 + MER44D DNA MER2_type 1 507 -1980 1353 175 63 69 chr1 251420978 251421211 -30772453 - MER7A DNA MER2_type -2693 345 115 1854 139 54 0 chr1 251421211 251421491 -30772173 + AluJb SINE Alu 1 295 -17 1353 175 63 69 chr1 251421491 251421606 -30772058 - MER7A DNA MER2_type -2923 115 1 2698 176 77 15 chr1 251421606 251421712 -30771952 + MER44D DNA MER2_type 507 605 0 315 239 11 0 chr1 251422490 251422578 -30771086 + L1 LINE L1 4249 4337 -1809 626 269 88 0 chr1 251423166 251423337 -30770327 - MIR SINE MIR -71 191 6 383 263 50 10 chr1 251423367 251423466 -30770198 - MIR SINE MIR -118 144 42 283 232 0 0 chr1 251423933 251423989 -30769675 + L2 LINE L2 3242 3297 -16 297 254 198 0 chr1 251424145 251424271 -30769393 + MIR SINE MIR 48 198 -64 610 268 75 22 chr1 251424343 251424571 -30769093 - MIR SINE MIR -12 250 11 4067 126 24 73 chr1 251424906 251425731 -30767933 + LTR1 LTR ERV1 1 785 0 2006 139 16 49 chr1 251426170 251426557 -30767107 - THE1C LTR MaLR -1 374 1 185 209 15 0 chr1 251426804 251426871 -30766793 + CT-rich Low_complexity Low_complexity 2 69 0 267 312 72 40 chr1 251427289 251427414 -30766250 - L2 LINE L2 0 3272 3144 234 0 0 0 chr1 251428695 251428721 -30764943 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 197 128 0 26 chr1 251429717 251429756 -30763908 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 23 54 0 0 chr1 251429929 251429966 -30763698 + AT_rich Low_complexity Low_complexity 1 37 0 261 337 89 10 chr1 251431262 251431363 -30762301 + L2 LINE L2 3151 3259 -13 282 235 118 12 chr1 251431410 251431495 -30762169 + L2 LINE L2 3209 3302 -11 276 196 36 0 chr1 251431540 251431596 -30762068 + L1ME LINE L1 5522 5579 -542 458 182 23 0 chr1 251432077 251432165 -30761499 + Tigger5 DNA MER2_type 2234 2323 0 378 277 36 0 chr1 251432560 251432672 -30760992 + MER94 DNA DNA 4 119 -15 329 285 124 16 chr1 251432845 251433122 -30760542 + HAL1b LINE L1 800 2499 -8 2005 148 20 0 chr1 251433141 251433445 -30760219 + AluJb SINE Alu 1 310 -2 487 307 231 5 chr1 251433500 251433712 -30759952 - MIR SINE MIR 0 262 3 492 275 138 17 chr1 251433729 251434132 -30759532 + L1MC4a LINE L1 5528 5981 -140 329 314 95 62 chr1 251434140 251434253 -30759411 + L2 LINE L2 3022 3130 -183 1953 153 13 0 chr1 251434253 251434561 -30759103 + AluJo SINE Alu 1 312 0 329 314 95 62 chr1 251434561 251434721 -30758943 + L2 LINE L2 3130 3304 -9 191 246 58 58 chr1 251435355 251435424 -30758240 + L2 LINE L2 3244 3312 -1 725 253 29 100 chr1 251436516 251436675 -30756989 + MIR SINE MIR 2 134 -128 1550 148 121 4 chr1 251436675 251436939 -30756725 + AluSx SINE Alu 1 295 -17 725 253 29 100 chr1 251436939 251437060 -30756604 + MIR SINE MIR 134 262 0 198 353 0 0 chr1 251437636 251437704 -30755960 - MIR3 SINE MIR -1 207 140 23 0 0 0 chr1 251437704 251437727 -30755937 + AT_rich Low_complexity Low_complexity 1 23 0 2083 125 0 26 chr1 251437727 251438031 -30755633 - AluSx SINE Alu -16 296 1 235 294 0 33 chr1 251438302 251438394 -30755270 - L1MC4 LINE L1 -1340 6702 6614 1773 180 0 3 chr1 251438417 251438701 -30754963 - AluJb SINE Alu -27 285 3 626 209 0 0 chr1 251439089 251439204 -30754460 + MIR3 SINE MIR 87 201 -7 203 211 0 19 chr1 251439902 251439954 -30753710 + A-rich Low_complexity Low_complexity 4 54 0 195 167 0 0 chr1 251440488 251440530 -30753134 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 325 276 81 77 chr1 251440609 251440774 -30752890 + MIR SINE MIR 40 209 -53 1893 151 4 4 chr1 251440774 251441082 -30752582 + AluSx SINE Alu 3 310 0 325 276 81 77 chr1 251441082 251441136 -30752528 + MIR SINE MIR 209 261 -1 241 143 0 0 chr1 251441460 251441495 -30752169 - U2 snRNA snRNA -153 35 1 355 235 33 127 chr1 251441499 251441681 -30751983 - MIR SINE MIR -64 198 38 230 0 33 0 chr1 251441777 251441807 -30751857 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr1 251441934 251441958 -30751706 + (T)n Simple_repeat Simple_repeat 1 24 0 2544 58 0 0 chr1 251442135 251442443 -30751221 - AluY SINE Alu -2 309 2 691 184 22 7 chr1 251442663 251442799 -30750865 + MLT1A1 LTR MaLR 1 138 -227 661 256 30 19 chr1 251443013 251443224 -30750440 - MIR SINE MIR 0 262 51 741 114 23 46 chr1 251443560 251443691 -30749973 + FLAM_C SINE Alu 1 128 -5 579 231 172 14 chr1 251443819 251444040 -30749624 - MIR SINE MIR -5 257 2 729 173 0 23 chr1 251444609 251444742 -30748922 + FLAM_C SINE Alu 1 130 -3 2304 88 13 3 chr1 251445000 251445306 -30748358 + AluY SINE Alu 1 309 -2 1190 159 173 4 chr1 251446028 251446299 -30747365 - MER33 DNA MER1_type -6 318 2 827 147 0 29 chr1 251446327 251446463 -30747201 + AluJo SINE Alu 2 133 -169 12991 84 23 2 chr1 251446954 251449557 -30744107 + L1PA7 LINE L1 3553 6168 0 285 29 0 0 chr1 251449746 251449780 -30743884 + (CA)n Simple_repeat Simple_repeat 2 35 0 679 213 65 7 chr1 251449781 251449936 -30743728 + MER8 DNA MER2_type 14 177 -62 278 203 102 0 chr1 251449912 251449971 -30743693 + MER2 DNA MER2_type 281 345 0 * 379 178 0 14 chr1 251449971 251450042 -30743622 - Tigger2 DNA MER2_type -2647 71 2 292 283 75 0 chr1 251450042 251450162 -30743502 + L1ME4a LINE L1 5946 6074 -47 901 152 0 0 chr1 251450653 251450791 -30742873 - FLAM_C SINE Alu -5 138 1 714 218 0 15 chr1 251450969 251451102 -30742562 + FLAM_A SINE Alu 1 131 -2 1784 211 61 17 chr1 251451331 251451804 -30741860 + L1ME2 LINE L1 5581 6074 -90 206 74 0 111 chr1 251451850 251451904 -30741760 + (TAAAA)n Simple_repeat Simple_repeat 4 51 0 24 32 0 0 chr1 251452502 251452533 -30741131 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 251453196 251453217 -30740447 + AT_rich Low_complexity Low_complexity 1 21 0 745 165 61 49 chr1 251453395 251453559 -30740105 + FRAM SINE Alu 3 168 -8 402 247 0 0 chr1 251453560 251453633 -30740031 + L2 LINE L2 3230 3302 -11 204 40 0 0 chr1 251453851 251453876 -30739788 + (CATTT)n Simple_repeat Simple_repeat 4 28 0 246 326 10 41 chr1 251454160 251454258 -30739406 - L2 LINE L2 -1 3271 3177 1575 93 5 9 chr1 251454772 251454986 -30738678 + AluSc SINE Alu 2 214 -95 2415 47 0 7 chr1 251455199 251455497 -30738167 - AluY SINE Alu -15 296 1 1219 320 116 40 chr1 251455528 251455948 -30737716 + L2 LINE L2 1842 2229 -1084 1696 172 95 21 chr1 251455948 251456286 -30737378 + MLT1A1 LTR MaLR 3 365 0 1219 320 116 40 chr1 251456286 251456953 -30736711 + L2 LINE L2 2229 3074 -239 2142 110 43 15 chr1 251456953 251457281 -30736383 + MER1B DNA MER1_type 1 337 0 1219 320 116 40 chr1 251457281 251457498 -30736166 + L2 LINE L2 3074 3273 -40 4252 115 8 0 chr1 251457498 251458160 -30735504 + L1MA3 LINE L1 5638 6304 -1 354 145 72 0 chr1 251458980 251459049 -30734615 + MLT1D LTR MaLR 3 76 -429 2013 140 28 22 chr1 251459049 251459152 -30734512 + MER47A DNA MER2_type 1 102 -2221 2528 135 28 37 chr1 251459152 251459583 -30734081 + MSTC LTR MaLR 1 427 -1 2013 140 28 22 chr1 251459583 251459843 -30733821 + MER47A DNA MER2_type 102 366 0 1605 194 60 32 chr1 251459847 251460250 -30733414 + MLT1D LTR MaLR 79 492 -13 2971 219 59 44 chr1 251460332 251460584 -30733080 - L1ME1 LINE L1 -7 6228 5981 1936 150 0 42 chr1 251460584 251460897 -30732767 + AluJb SINE Alu 1 300 -12 2971 219 59 44 chr1 251460897 251461965 -30731699 - L1ME1 LINE L1 -254 5981 4875 357 24 0 0 chr1 251461965 251462007 -30731657 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 2971 219 59 44 chr1 251462007 251462438 -30731226 - L1ME1 LINE L1 -1360 4875 4452 732 204 138 29 chr1 251462438 251462678 -30730986 + LTR40b LTR ERVL 197 462 0 1753 256 29 10 chr1 251462692 251463184 -30730480 - L1ME1 LINE L1 -5844 552 52 1792 161 7 10 chr1 251463474 251463779 -30729885 - AluJb SINE Alu -8 304 1 2417 57 0 29 chr1 251464267 251464583 -30729081 - AluY SINE Alu -4 307 1 932 182 47 89 chr1 251465179 251465492 -30728172 - LTR41 LTR ERVL 0 795 475 938 203 0 0 chr1 251465501 251465664 -30728000 + FRAM SINE Alu 10 172 -4 915 242 42 14 chr1 251465749 251466034 -30727630 - LTR41 LTR ERVL -480 293 1 5167 104 1 5 chr1 251466200 251466953 -30726711 + L1PA8 LINE L1 5423 6172 0 816 229 57 0 chr1 251467029 251467221 -30726443 + MIR SINE MIR 2 204 -58 763 184 7 15 chr1 251467766 251467902 -30725762 - AluJo/FRAM SINE Alu -17 295 161 1296 148 7 79 chr1 251467902 251468180 -30725484 - AluSq SINE Alu -55 258 1 2154 123 0 0 chr1 251468292 251468592 -30725072 - AluSx SINE Alu -12 300 1 215 394 47 8 chr1 251468903 251469030 -30724634 - L2 LINE L2 0 3272 3141 544 285 152 55 chr1 251470553 251471161 -30722503 + L2 LINE L2 2637 3313 0 1699 147 0 83 chr1 251471404 251471730 -30721934 - AluJb SINE Alu -13 299 1 239 269 26 26 chr1 251471900 251471978 -30721686 - L2 LINE L2 -4 3268 3191 605 257 47 59 chr1 251472835 251473088 -30720576 - MIR SINE MIR -1 261 12 649 227 81 1 chr1 251473400 251473578 -30720086 + MIR SINE MIR 69 258 -4 198 338 68 0 chr1 251473697 251473771 -30719893 - MIR SINE MIR -74 188 110 2286 101 3 0 chr1 251474143 251474431 -30719233 - AluSp SINE Alu -24 289 1 385 175 12 52 chr1 251474524 251474714 -30718950 - MER5C DNA MER1_type -3 321 79 682 215 41 6 chr1 251474720 251474892 -30718772 + MER82 DNA MER2_type 1 178 -475 1719 191 3 13 chr1 251474902 251475217 -30718447 - AluJb SINE Alu 0 312 1 1751 157 3 34 chr1 251475306 251475600 -30718064 + AluJo SINE Alu 11 295 -17 1893 156 3 40 chr1 251475604 251475925 -30717739 + AluSx SINE Alu 1 309 -3 2413 98 0 0 chr1 251475972 251476279 -30717385 - AluSc SINE Alu -2 307 1 1839 176 7 0 chr1 251476296 251476585 -30717079 - AluJb SINE Alu -21 291 1 1768 235 42 5 chr1 251476679 251477126 -30716538 + MER82 DNA MER2_type 190 653 0 187 380 88 19 chr1 251477168 251477384 -30716280 + L2 LINE L2 2804 3034 -238 1002 183 6 11 chr1 251477466 251477641 -30716023 - FRAM SINE Alu -5 171 1 290 348 36 9 chr1 251478235 251478347 -30715317 + L2 LINE L2 3199 3313 0 3883 175 88 33 chr1 251478564 251479381 -30714283 - MER21B LTR ERV1 -1 862 1 336 207 53 93 chr1 251480723 251480822 -30712842 + MIR SINE MIR 81 174 -88 1786 173 37 0 chr1 251480822 251481117 -30712547 + AluJo SINE Alu 1 306 -6 336 207 53 93 chr1 251481117 251481167 -30712497 + MIR SINE MIR 174 224 -38 1026 272 12 8 chr1 251481437 251481691 -30711973 - MIR SINE MIR -2 260 6 484 261 152 22 chr1 251481857 251482081 -30711583 - MIR SINE MIR -5 257 9 193 418 0 14 chr1 251482384 251482530 -30711134 + L2 LINE L2 2824 2967 -305 777 178 89 0 chr1 251483128 251483297 -30710367 - MER3 DNA MER1_type 0 209 26 209 229 71 43 chr1 251490127 251490197 -30703467 - L2 LINE L2 -209 3063 2992 761 268 54 0 chr1 251490280 251490485 -30703179 + MIR SINE MIR 1 216 -46 423 148 123 0 chr1 251490485 251490566 -30703098 + MER96 DNA MER1_type? 79 169 -6 1442 219 62 17 chr1 251490580 251491001 -30702663 - LTR40c LTR ERVL -5 460 21 205 238 24 0 chr1 251491049 251491091 -30702573 - L3 LINE CR1 -1 1576 1534 1293 150 52 58 chr1 251491096 251491422 -30702242 - MER33 DNA MER1_type 0 324 1 2374 94 7 0 chr1 251492512 251492821 -30700843 - AluSx SINE Alu -1 311 1 2465 85 0 0 chr1 251493852 251494158 -30699506 + AluSg SINE Alu 1 306 -4 2448 99 0 0 chr1 251495186 251495498 -30698166 - AluSx SINE Alu 0 312 1 490 209 206 25 chr1 251495632 251495947 -30697717 - HAL1 LINE L1 -130 2377 2006 459 271 29 43 chr1 251496013 251496223 -30697441 - HAL1 LINE L1 -623 1884 1678 837 240 76 57 chr1 251496274 251496657 -30697007 + MLT1C LTR MaLR 76 465 -2 387 237 116 52 chr1 251496661 251496834 -30696830 - HAL1 LINE L1 -915 1592 1409 24 0 0 0 chr1 251496862 251496886 -30696778 + AT_rich Low_complexity Low_complexity 1 24 0 475 219 0 9 chr1 251497518 251497632 -30696032 - L1PA16 LINE L1 -5 6161 6049 245 313 45 83 chr1 251497656 251497969 -30695695 - L2 LINE L2 -650 2664 2364 414 53 0 0 chr1 251498422 251498479 -30695185 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 761 268 54 0 chr1 251498567 251498772 -30694892 + MIR SINE MIR 1 216 -46 423 148 123 0 chr1 251498772 251498853 -30694811 + MER96 DNA MER1_type? 79 169 -6 550 176 20 0 chr1 251498858 251498960 -30694704 - LTR40a LTR ERVL -8 511 408 1821 117 0 88 chr1 251499181 251499498 -30694166 - AluSx SINE Alu -23 289 1 598 234 6 4 chr1 251500283 251500467 -30693197 + MIR SINE MIR 10 262 0 1793 139 24 27 chr1 251501469 251501763 -30691901 - AluJb SINE Alu -5 307 15 252 273 83 8 chr1 251502058 251502190 -30691474 - L1MC4 LINE L1 -372 7670 7529 331 232 54 0 chr1 251502243 251502355 -30691309 - L1MC5 LINE L1 -544 7417 7300 288 290 82 19 chr1 251502385 251502708 -30690956 - L1MC5 LINE L1 -440 7368 7048 2371 101 0 16 chr1 251502791 251503107 -30690557 - AluSq SINE Alu -2 311 1 700 237 64 8 chr1 251503128 251503364 -30690300 - L1MC4 LINE L1 -981 7061 6813 201 159 0 0 chr1 251503760 251503804 -30689860 + T-rich Low_complexity Low_complexity 1 44 0 3468 43 0 0 chr1 251503805 251504223 -30689441 - L1PA3 LINE L1 -3 6152 5735 28 0 0 0 chr1 251505293 251505321 -30688343 + AT_rich Low_complexity Low_complexity 1 28 0 490 314 52 24 chr1 251505871 251506081 -30687583 + MIR SINE MIR 3 218 -44 242 271 36 78 chr1 251506304 251506470 -30687194 - HAL1 LINE L1 -17 2490 2332 6002 165 180 8 chr1 251506470 251507812 -30685852 - MER52A LTR ERV1 0 1755 183 302 181 4 13 chr1 251508251 251508329 -30685335 - MER52A LTR ERV1 -1218 71 1 466 275 203 23 chr1 251508355 251508883 -30684781 - HAL1 LINE L1 -194 2313 1691 2476 240 93 45 chr1 251508967 251509765 -30683899 - HAL1 LINE L1 -645 1862 997 2180 127 0 3 chr1 251509765 251510065 -30683599 + AluSq SINE Alu 1 299 -14 2476 240 93 45 chr1 251510065 251510341 -30683323 - HAL1 LINE L1 -1510 997 736 919 260 145 40 chr1 251510354 251510961 -30682703 - HAL1 LINE L1 -1828 679 9 1942 140 20 3 chr1 251511053 251511346 -30682318 - AluSx SINE Alu -14 298 1 688 228 84 36 chr1 251511685 251511852 -30681812 - MER5A DNA MER1_type -14 175 1 2502 57 0 3 chr1 251512123 251512419 -30681245 + AluY SINE Alu 1 295 -16 1731 136 0 75 chr1 251512861 251513156 -30680508 + AluJb SINE Alu 1 273 -39 23 0 0 0 chr1 251513674 251513697 -30679967 + AT_rich Low_complexity Low_complexity 1 23 0 446 273 100 0 chr1 251513821 251513931 -30679733 + L2 LINE L2 3151 3271 -1 1055 229 41 75 chr1 251514509 251515045 -30678619 + L1MC5 LINE L1 7396 7913 -48 367 258 133 56 chr1 251515057 251515290 -30678374 - L2 LINE L2 -1478 1836 1586 2349 55 7 0 chr1 251515704 251515997 -30677667 + AluY SINE Alu 1 295 -16 1731 136 0 75 chr1 251516439 251516734 -30676930 + AluJb SINE Alu 1 273 -39 23 0 0 0 chr1 251517252 251517275 -30676389 + AT_rich Low_complexity Low_complexity 1 23 0 446 273 100 0 chr1 251517399 251517509 -30676155 + L2 LINE L2 3151 3271 -1 24 0 0 0 chr1 251518875 251518899 -30674765 + AT_rich Low_complexity Low_complexity 1 24 0 2516 66 0 19 chr1 251518984 251519301 -30674363 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 251519331 251519354 -30674310 + AT_rich Low_complexity Low_complexity 1 23 0 1761 154 7 7 chr1 251520820 251521113 -30672551 - AluJb SINE Alu -14 298 6 790 188 45 0 chr1 251522792 251522968 -30670696 + MER3 DNA MER1_type 5 188 -21 189 0 0 0 chr1 251523569 251523590 -30670074 + (CA)n Simple_repeat Simple_repeat 2 22 0 366 301 131 15 chr1 251524291 251524497 -30669167 + MIR SINE MIR 23 252 -10 413 310 101 19 chr1 251524640 251524898 -30668766 + L1ME4a LINE L1 5620 5898 -223 639 263 39 19 chr1 251525413 251525618 -30668046 - MIR SINE MIR 0 262 54 341 315 9 0 chr1 251527833 251527944 -30665720 - MER94 DNA DNA -22 112 1 28 0 0 0 chr1 251528163 251528191 -30665473 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 251528343 251528378 -30665286 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 251529296 251529319 -30664345 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr1 251529906 251529933 -30663731 + (GA)n Simple_repeat Simple_repeat 2 28 0 356 280 93 8 chr1 251529987 251530105 -30663559 - MIR SINE MIR -133 129 2 494 218 32 26 chr1 251531121 251531277 -30662387 + MER103 DNA DNA 1 157 -9 678 228 123 0 chr1 251531331 251531493 -30662171 + MIR SINE MIR 10 191 -71 341 315 9 0 chr1 251533418 251533529 -30660135 - MER94 DNA DNA -22 112 1 28 0 0 0 chr1 251533748 251533776 -30659888 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr1 251533928 251533963 -30659701 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr1 251534881 251534904 -30658760 + AT_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr1 251535491 251535518 -30658146 + (GA)n Simple_repeat Simple_repeat 2 28 0 356 280 93 8 chr1 251535572 251535690 -30657974 - MIR SINE MIR -133 129 2 494 218 32 26 chr1 251536706 251536862 -30656802 + MER103 DNA DNA 1 157 -9 678 228 123 0 chr1 251536916 251537078 -30656586 + MIR SINE MIR 10 191 -71 203 175 0 16 chr1 251538299 251538362 -30655302 + GA-rich Low_complexity Low_complexity 2 63 0 324 70 0 0 chr1 251538955 251538998 -30654666 + (CA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr1 251540836 251540857 -30652807 + AT_rich Low_complexity Low_complexity 1 21 0 197 62 0 31 chr1 251540972 251541004 -30652660 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 833 185 11 42 chr1 251543229 251543418 -30650246 + MER20 DNA MER1_type 37 219 0 228 194 0 45 chr1 251544985 251545052 -30648612 + (CACCC)n Simple_repeat Simple_repeat 4 67 0 331 244 104 44 chr1 251545779 251545914 -30647750 + MIR SINE MIR 100 242 -20 381 258 62 8 chr1 251545935 251546063 -30647601 - MER104 DNA Tc2 -12 168 34 570 313 66 77 chr1 251546330 251546520 -30647144 + L2 LINE L2 2807 2998 -274 1857 164 24 0 chr1 251546520 251546818 -30646846 + AluJo SINE Alu 2 306 -6 570 313 66 77 chr1 251546818 251547096 -30646568 + L2 LINE L2 2998 3270 -2 487 261 43 7 chr1 251547365 251547503 -30646161 - MIR SINE MIR -4 258 116 2067 134 10 0 chr1 251547806 251548104 -30645560 - AluSx SINE Alu -11 301 1 265 298 137 42 chr1 251548453 251548621 -30645043 + MIR SINE MIR 44 227 -35 364 155 67 186 chr1 251548643 251548836 -30644828 - HsTC2 DNA Tc2 -4 1894 5 21 36 0 0 chr1 251549048 251549076 -30644588 + AT_rich Low_complexity Low_complexity 1 28 0 1742 170 10 7 chr1 251549129 251549423 -30644241 - AluJo SINE Alu -17 295 1 2387 100 0 0 chr1 251549834 251550143 -30643521 + AluSq SINE Alu 1 309 -4 2327 79 20 0 chr1 251551453 251551745 -30641919 - AluY SINE Alu -12 299 2 398 276 41 77 chr1 251552953 251553149 -30640515 - MER5A DNA MER1_type 0 189 1 1249 92 25 5 chr1 251553373 251553601 -30640063 + L1PA10 LINE L1 5948 6179 0 2261 118 0 0 chr1 251553760 251554057 -30639607 - AluSg SINE Alu -13 297 1 189 321 89 14 chr1 251555297 251555463 -30638201 - MIR SINE MIR -11 251 42 1413 115 64 9 chr1 251556800 251557018 -30636646 - MER30 DNA MER1_type 0 230 1 357 291 126 15 chr1 251557909 251558108 -30635556 - MIR SINE MIR -10 252 32 1499 179 28 39 chr1 251559231 251559516 -30634148 - AluJo SINE Alu -30 282 1 365 262 122 43 chr1 251559523 251559687 -30633977 + MER5A DNA MER1_type 3 179 -10 2146 107 3 23 chr1 251560697 251561005 -30632659 - AluSc SINE Alu -7 302 1 2162 109 27 0 chr1 251561048 251561341 -30632323 - AluSq SINE Alu -12 301 1 440 270 97 67 chr1 251561351 251561692 -30631972 - L2 LINE L2 -18 3295 2945 369 255 142 39 chr1 251561733 251561879 -30631785 - L2 LINE L2 -466 2848 2674 2390 100 0 3 chr1 251561879 251562189 -30631475 + AluSc SINE Alu 1 309 0 369 255 142 39 chr1 251562189 251562246 -30631418 - L2 LINE L2 -640 2674 2624 265 264 130 92 chr1 251562897 251563158 -30630506 - L2 LINE L2 0 3272 3002 448 285 26 7 chr1 251563542 251563693 -30629971 - MLT1I LTR MaLR -50 359 206 345 210 34 41 chr1 251563691 251563789 -30629875 - MLT1I LTR MaLR -272 137 67 * 1970 121 3 37 chr1 251563923 251564246 -30629418 + AluJb SINE Alu 1 312 0 491 214 16 107 chr1 251564665 251564810 -30628854 - MER5B DNA MER1_type -4 174 48 2314 92 0 3 chr1 251564810 251565102 -30628562 + AluSp SINE Alu 1 291 -22 491 214 16 107 chr1 251565102 251565143 -30628521 - MER5B DNA MER1_type -130 48 5 327 274 7 0 chr1 251565290 251565425 -30628239 + (TAA)n Simple_repeat Simple_repeat 3 138 0 304 291 9 27 chr1 251565461 251565571 -30628093 - MIR SINE MIR -76 186 79 188 328 45 0 chr1 251567281 251567348 -30626316 + MIR SINE MIR 78 147 -61 1288 43 37 0 chr1 251567689 251567850 -30625814 + L1PA11 LINE L1 6005 6171 -3 1150 188 4 43 chr1 251567850 251568104 -30625560 + L1MB1 LINE L1 5923 6167 -1 194 374 66 0 chr1 251568454 251568545 -30625119 + MIR SINE MIR 33 129 -133 180 327 0 0 chr1 251568662 251568714 -30624950 - L2 LINE L2 -94 3178 3127 1616 147 52 25 chr1 251568815 251569101 -30624563 - AluJo SINE Alu -18 294 1 1075 141 0 0 chr1 251569874 251570063 -30623601 - AluSq SINE Alu 0 318 130 2044 86 0 21 chr1 251570114 251570393 -30623271 - AluSx SINE Alu -39 273 1 1039 88 0 22 chr1 251570393 251570530 -30623134 - AluSq SINE Alu -179 134 1 794 209 39 6 chr1 251570536 251570718 -30622946 - AluJo SINE Alu -20 292 105 2590 55 0 6 chr1 251571039 251571350 -30622314 - AluY SINE Alu -2 309 1 279 177 0 0 chr1 251571356 251571418 -30622246 + T-rich Low_complexity Low_complexity 1 62 0 189 107 0 0 chr1 251571846 251571874 -30621790 + (TAA)n Simple_repeat Simple_repeat 2 29 0 530 249 121 18 chr1 251571882 251572047 -30621617 - MIR SINE MIR -22 240 59 2039 114 0 17 chr1 251572235 251572419 -30621245 - AluSx SINE Alu 0 317 139 2191 75 0 27 chr1 251572419 251572753 -30620911 - AluSx SINE Alu 0 312 1 2039 114 0 17 chr1 251572753 251572890 -30620774 - AluSx SINE Alu -178 139 1 808 200 34 6 chr1 251572904 251573079 -30620585 - AluJo SINE Alu -28 284 105 2590 55 0 6 chr1 251573400 251573711 -30619953 - AluY SINE Alu -2 309 1 279 177 0 0 chr1 251573717 251573779 -30619885 + T-rich Low_complexity Low_complexity 1 62 0 189 107 0 0 chr1 251574207 251574235 -30619429 + (TAA)n Simple_repeat Simple_repeat 2 29 0 540 217 133 36 chr1 251574243 251574409 -30619255 - MIR SINE MIR -22 240 59 238 268 0 18 chr1 251574500 251574556 -30619108 + MIR SINE MIR 2 56 -206 522 277 61 0 chr1 251575145 251575293 -30618371 - MIR SINE MIR -20 242 86 342 225 22 114 chr1 251575413 251575524 -30618140 - MIR SINE MIR -65 143 102 2375 85 3 0 chr1 251575524 251575831 -30617833 - AluY SINE Alu -3 308 1 342 225 22 114 chr1 251575831 251575917 -30617747 - MIR SINE MIR -106 102 10 192 97 0 0 chr1 251576096 251576127 -30617537 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr1 251578317 251578346 -30615318 + AT_rich Low_complexity Low_complexity 1 29 0 701 238 0 0 chr1 251578749 251578892 -30614772 + MIR SINE MIR 61 203 -59 243 186 128 108 chr1 251579419 251579521 -30614143 + MIR SINE MIR 111 214 -48 182 37 37 0 chr1 251580130 251580157 -30613507 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 236 94 0 0 chr1 251580189 251580221 -30613443 - MER57A LTR ERV1 -77 326 295 250 345 14 42 chr1 251580443 251580585 -30613079 + MIR SINE MIR 16 153 -55 244 261 193 25 chr1 251581084 251581203 -30612461 - MIR SINE MIR 0 262 124 204 357 107 30 chr1 251581210 251581546 -30612118 - L2 LINE L2 -92 3180 2819 240 274 88 35 chr1 251583345 251583458 -30610206 + MIR SINE MIR 96 214 -48 229 275 9 92 chr1 251583553 251583662 -30610002 - L2 LINE L2 -17 3296 3197 317 288 111 95 chr1 251585996 251586346 -30607318 + L3 LINE CR1 892 1257 -320 2217 84 3 11 chr1 251586346 251586657 -30607007 + AluY SINE Alu 1 309 0 317 288 111 95 chr1 251586657 251586874 -30606790 + L3 LINE CR1 1257 1469 -108 283 233 22 33 chr1 251587897 251587987 -30605677 + GA-rich Low_complexity Low_complexity 1 89 0 2468 66 0 10 chr1 251588184 251588485 -30605179 - AluY SINE Alu -13 298 1 2598 64 0 10 chr1 251589877 251590191 -30603473 - AluY SINE Alu 0 311 1 197 294 0 0 chr1 251590502 251590553 -30603111 + MER5A DNA MER1_type 117 167 -22 26 64 0 0 chr1 251590819 251590866 -30602798 + AT_rich Low_complexity Low_complexity 1 47 0 191 259 37 62 chr1 251590902 251590983 -30602681 - L3 LINE CR1 -308 1269 1191 464 244 113 6 chr1 251590989 251591149 -30602515 + MER5B DNA MER1_type 2 178 0 2291 91 3 3 chr1 251591263 251591559 -30602105 + AluSx SINE Alu 1 296 -16 2637 47 0 3 chr1 251591559 251591860 -30601804 + AluY SINE Alu 1 300 -11 191 367 0 0 chr1 251591923 251591983 -30601681 - MER5A DNA MER1_type 0 189 130 291 268 14 0 chr1 251592479 251592550 -30601114 - MER5A DNA MER1_type -117 72 1 2133 101 4 0 chr1 251592834 251593159 -30600505 - AluSc SINE Alu 0 328 3 1595 176 7 24 chr1 251593169 251593465 -30600199 - AluJo SINE Alu -21 291 1 538 168 95 29 chr1 251593465 251593572 -30600092 - L1MD3 LINE L1 -23 7972 7850 768 110 0 17 chr1 251593572 251593690 -30599974 + L1MA2 LINE L1 6189 6304 0 538 168 95 29 chr1 251593690 251593709 -30599955 - L1MD3 LINE L1 -145 7850 7834 238 149 75 30 chr1 251593711 251593778 -30599886 + L1MD3 LINE L1 7796 7865 -130 331 275 60 55 chr1 251594167 251594349 -30599315 - MIR SINE MIR -32 230 48 2813 258 108 47 chr1 251594431 251594860 -30598804 - MER45C DNA AcHobo -628 953 551 510 82 10 71 chr1 251594860 251594958 -30598706 + L1PB2 LINE L1 6060 6151 0 2813 258 108 47 chr1 251594958 251595418 -30598246 - MER45C DNA AcHobo -1030 551 10 183 42 0 0 chr1 251597481 251597505 -30596159 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chr1 251598374 251598399 -30595265 + (ATTG)n Simple_repeat Simple_repeat 3 27 0 1961 142 0 14 chr1 251598400 251598689 -30594975 - AluSx SINE Alu -27 285 1 288 0 0 0 chr1 251599616 251599648 -30594016 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1433 204 7 14 chr1 251599666 251599941 -30593723 - AluJo SINE Alu -39 273 1 267 302 16 16 chr1 251600301 251600430 -30593234 + CT-rich Low_complexity Low_complexity 4 132 0 216 0 0 0 chr1 251600465 251600489 -30593175 + (CA)n Simple_repeat Simple_repeat 2 25 0 471 200 214 7 chr1 251600644 251600789 -30592875 + MER5A DNA MER1_type 14 188 -1 1304 170 104 42 chr1 251601363 251601652 -30592012 - AluJo SINE Alu -5 307 1 503 253 16 113 chr1 251601818 251602075 -30591589 - MIR SINE MIR -30 232 1 3054 112 121 4 chr1 251603053 251603525 -30590139 - MER1A DNA MER1_type 0 527 1 180 279 82 0 chr1 251605223 251605284 -30588380 - MIR SINE MIR -115 147 82 1976 244 50 35 chr1 251605466 251605859 -30587805 - MLT1H1 LTR MaLR 0 555 150 2166 116 17 0 chr1 251605859 251606153 -30587511 + AluSx SINE Alu 1 299 -13 1976 244 50 35 chr1 251606153 251606300 -30587364 - MLT1H1 LTR MaLR -405 150 7 2169 160 15 12 chr1 251607750 251608151 -30585513 + L1MB4 LINE L1 5569 5970 -210 2453 73 0 3 chr1 251608151 251608452 -30585212 + AluSx SINE Alu 1 300 -12 696 238 14 0 chr1 251608456 251608599 -30585065 - MLT1H1 LTR MaLR -404 151 7 284 289 193 15 chr1 251609531 251609659 -30584005 - MLT1H1 LTR MaLR -260 295 141 1776 116 0 4 chr1 251609659 251609901 -30583763 + AluSx SINE Alu 1 241 -71 286 152 121 30 chr1 251610217 251610283 -30583381 + Tigger5 DNA MER2_type 2252 2323 0 294 29 0 0 chr1 251610797 251610832 -30582832 + (CA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr1 251610931 251610952 -30582712 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 821 233 6 0 chr1 251611386 251611549 -30582115 - MIR SINE MIR -96 166 3 267 357 113 0 chr1 251611555 251611740 -30581924 + MIR SINE MIR 20 225 -37 2515 87 0 0 chr1 251611982 251612294 -30581370 + AluSx SINE Alu 1 312 0 243 206 88 0 chr1 251612353 251612421 -30581243 + MIR SINE MIR 110 183 -79 1076 286 66 46 chr1 251613129 251613278 -30580386 + L2 LINE L2 2503 2648 -665 2006 131 116 33 chr1 251613278 251613614 -30580050 + THE1B LTR MaLR 1 364 0 12900 89 2 1 chr1 251613614 251615192 -30578472 + THE1B-int LTR MaLR 1 1580 0 2231 120 45 72 chr1 251615192 251615566 -30578098 + THE1B LTR MaLR 1 364 0 1076 286 66 46 chr1 251615566 251616163 -30577501 + L2 LINE L2 2647 3309 -4 28 29 0 0 chr1 251616409 251616444 -30577220 + AT_rich Low_complexity Low_complexity 1 35 0 268 286 176 41 chr1 251617558 251617736 -30575928 + MIR SINE MIR 25 221 -41 2063 130 17 0 chr1 251618526 251618827 -30574837 - AluSx SINE Alu -6 306 1 242 213 0 0 chr1 251622664 251622711 -30570953 + L2 LINE L2 3226 3272 0 394 93 0 0 chr1 251623097 251623151 -30570513 - MADE1 DNA Mariner 0 80 27 2113 140 40 6 chr1 251623311 251623661 -30570003 - L1MA4 LINE L1 -6 6294 5933 200 242 91 0 chr1 251623868 251623934 -30569730 + MIR SINE MIR 72 143 -119 2118 110 0 7 chr1 251624289 251624571 -30569093 + AluSq SINE Alu 1 280 -33 687 57 0 0 chr1 251624571 251624659 -30569005 + (CATA)n Simple_repeat Simple_repeat 1 88 0 264 269 161 63 chr1 251625581 251625804 -30567860 - MLT1L LTR MaLR -333 282 38 309 329 70 0 chr1 251627666 251627809 -30565855 + MIR SINE MIR 55 207 -55 1925 199 18 14 chr1 251628353 251628865 -30564799 - L1 LINE L1 -1249 4897 4384 220 115 0 58 chr1 251630161 251630213 -30563451 + (GGGAGA)n Simple_repeat Simple_repeat 3 51 0 1788 157 37 17 chr1 251631012 251631306 -30562358 - AluJo SINE Alu -12 300 1 198 96 39 19 chr1 251631452 251631504 -30562160 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1977 141 7 3 chr1 251631977 251632275 -30561389 + AluSp SINE Alu 15 313 0 1050 184 0 15 chr1 251633632 251633838 -30559826 + L1MB8 LINE L1 5976 6178 0 317 109 0 0 chr1 251633950 251633996 -30559668 + L1MB7 LINE L1 6131 6176 -8 318 200 0 0 chr1 251634568 251634623 -30559041 - FAM SINE Alu -17 158 109 359 247 11 45 chr1 251634731 251634820 -30558844 - FRAM/FAM SINE Alu -79 87 2 822 277 40 38 chr1 251634858 251635220 -30558444 + LTR16A1 LTR ERVL 126 456 -1 832 243 46 14 chr1 251635805 251636023 -30557641 + MIR SINE MIR 37 261 -1 688 214 126 28 chr1 251636679 251636894 -30556770 + L1ME3A LINE L1 5934 6169 -1 248 241 35 78 chr1 251637280 251637396 -30556268 + MLT1L LTR MaLR 505 615 0 6782 41 0 21 chr1 251637939 251638749 -30554915 + SVA Other Other 594 1386 0 1636 183 7 14 chr1 251639121 251639406 -30554258 + AluJo SINE Alu 1 283 -29 245 273 195 0 chr1 251639427 251639555 -30554109 + L1MEd LINE L1 514 666 -5864 304 272 41 61 chr1 251639829 251639976 -30553688 + L1MEd LINE L1 990 1133 -5397 354 310 80 19 chr1 251640329 251640431 -30553233 + L1MEd LINE L1 1330 1424 -5106 1191 148 124 0 chr1 251640431 251640641 -30553023 + MER46A DNA MER2_type 1 236 0 354 310 80 19 chr1 251640641 251640751 -30552913 + L1MEd LINE L1 1424 1555 -4975 24 53 0 0 chr1 251640814 251640852 -30552812 + AT_rich Low_complexity Low_complexity 1 38 0 255 286 31 83 chr1 251641055 251641113 -30552551 + L1MEd LINE L1 1724 1783 -4938 905 245 0 0 chr1 251641113 251641276 -30552388 - FAM SINE Alu -12 163 1 255 286 31 83 chr1 251641276 251641409 -30552255 + L1MEd LINE L1 1783 1905 -4816 428 260 308 16 chr1 251641828 251642078 -30551586 - MER5C DNA MER1_type -1 323 1 535 243 52 25 chr1 251642255 251642467 -30551197 + L1MEd LINE L1 2471 2684 -3856 1818 163 0 3 chr1 251642493 251642776 -30550888 + AluJb SINE Alu 9 290 -22 423 171 13 0 chr1 251642843 251642919 -30550745 + MLT2D LTR ERVL 1 77 -337 638 136 9 27 chr1 251643110 251643220 -30550444 - MER20 DNA MER1_type -105 114 7 257 270 54 32 chr1 251643396 251643522 -30550142 + MIR3 SINE MIR 87 225 -37 4309 82 6 0 chr1 251643647 251644183 -30549481 + L1PA8A LINE L1 5593 6131 0 187 270 108 36 chr1 251649018 251649129 -30544535 - MIR3 SINE MIR -88 120 2 534 345 67 14 chr1 251649184 251649407 -30544257 + MIR SINE MIR 22 256 -6 224 355 37 0 chr1 251651098 251651205 -30542459 + MIR SINE MIR 42 152 -56 322 221 138 41 chr1 251651660 251651805 -30541859 + MER5A DNA MER1_type 31 189 0 1494 174 113 22 chr1 251652174 251652485 -30541179 + MER58B DNA MER1_type 2 340 -1 2064 97 10 39 chr1 251652561 251652871 -30540793 + AluSg1 SINE Alu 1 301 -8 189 300 146 18 chr1 251652973 251653083 -30540581 - L2 LINE L2 -3 3269 3146 456 303 162 29 chr1 251654317 251654839 -30538825 + L2 LINE L2 2590 3192 -121 290 270 108 17 chr1 251654887 251655184 -30538480 - L1M4 LINE L1 -362 5812 5444 1076 170 0 87 chr1 251656060 251656289 -30537375 - AluJb SINE Alu -103 209 1 1978 191 23 30 chr1 251658274 251658744 -30534920 + MLT1C LTR MaLR 1 467 0 1740 171 19 19 chr1 251658822 251659176 -30534488 - AluJb SINE Alu 0 354 1 304 300 100 70 chr1 251659271 251659501 -30534163 + L2 LINE L2 3027 3263 -9 23 54 0 0 chr1 251659617 251659654 -30534010 + AT_rich Low_complexity Low_complexity 1 37 0 180 342 51 13 chr1 251660496 251660575 -30533089 - MIR SINE MIR -72 190 109 276 336 102 26 chr1 251660784 251661010 -30532654 + L3 LINE CR1 547 789 -788 598 321 73 13 chr1 251661554 251661856 -30531808 + L3 LINE CR1 547 866 -711 938 165 44 6 chr1 251661862 251662044 -30531620 + MER5A DNA MER1_type 1 189 0 485 251 143 89 chr1 251662125 251662440 -30531224 + L3 LINE CR1 865 1196 -381 207 0 0 0 chr1 251662615 251662638 -30531026 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2204 110 0 0 chr1 251662641 251662931 -30530733 - AluY SINE Alu -21 290 1 311 342 168 10 chr1 251663094 251663290 -30530374 + L3 LINE CR1 1348 1574 -3 205 280 0 0 chr1 251664221 251664271 -30529393 + (CATATA)n Simple_repeat Simple_repeat 6 55 0 779 190 35 40 chr1 251664522 251664748 -30528916 - L1MB4 LINE L1 -4 6176 5952 7493 37 0 1 chr1 251664763 251666305 -30527359 - L1PA5 LINE L1 -6 6148 4607 1052 179 49 9 chr1 251666409 251666767 -30526897 - MLT1D LTR MaLR -103 402 1 361 132 44 0 chr1 251666913 251666981 -30526683 - HsTC2 DNA Tc2 -5 1893 1823 230 234 47 47 chr1 251667015 251667122 -30526542 + MLT1H LTR MaLR 3 109 -440 287 186 0 0 chr1 251667331 251667390 -30526274 - HsTC2 DNA Tc2 -1838 60 2 28 0 0 0 chr1 251667755 251667783 -30525881 + AT_rich Low_complexity Low_complexity 1 28 0 221 235 341 15 chr1 251668340 251668472 -30525192 - MIR SINE MIR -44 218 44 1718 146 11 7 chr1 251672609 251672889 -30520775 - MER1B DNA MER1_type -5 334 54 211 320 101 73 chr1 251673034 251673253 -30520411 - L2 LINE L2 -162 3110 2886 7605 65 7 0 chr1 251674190 251675957 -30517707 - L1PA6 LINE L1 -1 6153 4378 433 255 135 7 chr1 251677403 251677544 -30516120 - MIR SINE MIR -2 260 102 1506 205 77 46 chr1 251677860 251678184 -30515480 - L1ME1 LINE L1 -5 6161 5818 2232 97 7 10 chr1 251678184 251678484 -30515180 - AluSq SINE Alu -14 299 1 1506 205 77 46 chr1 251678484 251678613 -30515051 - L1ME1 LINE L1 -348 5818 5694 4437 235 94 44 chr1 251678644 251678699 -30514965 - L1MEc LINE L1 -4592 1804 1753 2191 136 0 0 chr1 251678699 251679007 -30514657 - AluSx SINE Alu -4 308 1 4437 235 94 44 chr1 251679007 251680407 -30513257 - L1MEc LINE L1 -4643 1753 250 2257 177 38 20 chr1 251680407 251680854 -30512810 + MSTB2 LTR MaLR 3 457 0 4437 235 94 44 chr1 251680854 251681080 -30512584 - L1MEc LINE L1 -6146 250 37 2540 237 77 41 chr1 251683031 251684843 -30508821 + L1MDa LINE L1 1614 3483 -3057 2374 65 0 7 chr1 251684844 251685136 -30508528 + AluSx SINE Alu 1 290 -22 324 80 0 20 chr1 251685151 251685201 -30508463 + 5S rRNA rRNA 2 50 -71 564 135 45 0 chr1 251685204 251685293 -30508371 - AluJb SINE Alu -194 118 26 577 285 106 24 chr1 251685314 251685711 -30507953 - L1MC5 LINE L1 -373 7666 7260 2334 115 0 0 chr1 251686331 251686644 -30507020 + AluSq SINE Alu 1 313 0 28 79 0 0 chr1 251686725 251686788 -30506876 + AT_rich Low_complexity Low_complexity 1 63 0 4555 124 25 11 chr1 251687269 251688003 -30505661 - L1P3 LINE L1 -5710 751 8 2156 107 3 7 chr1 251688549 251688849 -30504815 - AluSx SINE Alu -13 299 1 1540 191 24 14 chr1 251688850 251689144 -30504520 - AluJb SINE Alu -15 297 1 1953 167 21 49 chr1 251689502 251689968 -30503696 + L1MB7 LINE L1 5685 6137 -47 235 220 193 7 chr1 251690505 251690655 -30503009 - Charlie2 DNA MER1_type -1 2861 2684 * 1016 200 46 96 chr1 251690645 251690887 -30502777 - Charlie2 DNA MER1_type -364 2498 2245 1774 148 50 16 chr1 251690887 251691190 -30502474 - AluSq SINE Alu 0 313 1 1016 200 46 96 chr1 251691190 251691415 -30502249 - Charlie2 DNA MER1_type -617 2245 2057 2122 131 6 3 chr1 251691415 251691727 -30501937 - AluSq SINE Alu 0 313 1 1016 200 46 96 chr1 251691727 251691779 -30501885 - Charlie2 DNA MER1_type -805 2057 2004 2121 142 24 0 chr1 251691779 251692210 -30501454 + L1M4 LINE L1 5215 5655 -529 5531 83 9 0 chr1 251692310 251693472 -30500192 - L1P2 LINE L1 -448 5706 4536 2239 72 0 4 chr1 251693507 251693785 -30499879 - AluY SINE Alu -34 277 1 23 0 0 0 chr1 251694826 251694849 -30498815 + AT_rich Low_complexity Low_complexity 1 23 0 782 236 190 19 chr1 251696441 251696751 -30496913 + L2 LINE L2 2951 3313 0 441 245 10 29 chr1 251700439 251700541 -30493123 - L2 LINE L2 0 3313 3214 274 299 0 21 chr1 251700587 251700684 -30492980 + MIR SINE MIR 143 237 -25 34835 50 2 1 chr1 251701021 251706431 -30487233 + L1PA4 LINE L1 738 6155 0 1394 56 0 33 chr1 251706430 251706644 -30487020 + L1PA5 LINE L1 5754 5959 -195 * 1734 115 4 4 chr1 251706767 251707010 -30486654 - AluSx SINE Alu -69 243 1 2980 144 33 2 chr1 251707010 251707560 -30486104 - L1MB3 LINE L1 -224 5959 5393 286 180 0 20 chr1 251707944 251707994 -30485670 - tRNA-Arg-AGG tRNA tRNA -26 50 2 2062 140 7 3 chr1 251708997 251709297 -30484367 - AluSx SINE Alu -11 301 1 830 164 0 15 chr1 251709317 251709451 -30484213 - AluJo SINE Alu -176 136 5 2481 59 0 3 chr1 251709919 251710222 -30483442 + AluY SINE Alu 1 302 -9 218 261 0 0 chr1 251711762 251711808 -30481856 - MIR3 SINE MIR -9 199 154 985 207 45 0 chr1 251711809 251712007 -30481657 + MER3 DNA MER1_type 1 207 -2 214 347 0 21 chr1 251712053 251712148 -30481516 - MIR SINE MIR -67 141 49 192 97 0 0 chr1 251713447 251713478 -30480186 + (CA)n Simple_repeat Simple_repeat 1 31 0 2417 75 0 0 chr1 251713743 251714035 -30479629 + AluY SINE Alu 1 292 -19 5128 125 92 24 chr1 251714035 251714357 -30479307 + Tigger3b DNA MER2_type 202 501 -2527 2253 76 0 10 chr1 251714357 251714661 -30479003 - AluY SINE Alu -10 301 1 5128 125 92 24 chr1 251714661 251715301 -30478363 + Tigger3b DNA MER2_type 501 1230 -1 1466 266 272 14 chr1 251715302 251716152 -30477512 - L2 LINE L2 -779 2535 1467 1009 255 138 17 chr1 251716164 251716525 -30477139 - L2 LINE L2 -2220 1094 690 736 287 72 34 chr1 251716692 251716985 -30476679 - L2 LINE L2 -2611 703 400 268 286 176 41 chr1 251717532 251717710 -30475954 - MIR SINE MIR -41 221 25 213 175 0 0 chr1 251718283 251718323 -30475341 + (TA)n Simple_repeat Simple_repeat 2 41 0 727 246 18 36 chr1 251718762 251718982 -30474682 - L3b LINE CR1 -229 1354 1139 186 260 0 20 chr1 251721600 251721650 -30472014 + L2 LINE L2 3223 3271 -1 351 0 0 0 chr1 251721894 251721933 -30471731 + (CTA)n Simple_repeat Simple_repeat 1 39 0 533 264 96 92 chr1 251721996 251722246 -30471418 - MLT1J2 LTR MaLR 0 450 200 302 311 121 23 chr1 251725343 251725475 -30468189 - MIR SINE MIR -72 190 46 336 296 9 26 chr1 251725737 251725852 -30467812 + L2 LINE L2 3151 3263 -9 906 257 31 35 chr1 251726029 251726290 -30467374 - MIR SINE MIR -1 261 2 1182 290 75 68 chr1 251726420 251727575 -30466089 - L2 LINE L2 -19 3294 2139 2691 134 4 33 chr1 251729920 251730374 -30463290 + L1MB2 LINE L1 5326 5766 -417 1872 147 43 41 chr1 251730382 251730598 -30463066 + THE1C LTR MaLR 7 226 -149 2137 120 3 7 chr1 251730598 251730897 -30462767 + AluSq SINE Alu 1 298 -15 1872 147 43 41 chr1 251730897 251731048 -30462616 + THE1C LTR MaLR 226 375 0 2009 153 40 33 chr1 251731048 251731401 -30462263 + L1MB2 LINE L1 5762 6120 -51 2036 159 0 0 chr1 251731401 251731710 -30461954 + AluSx SINE Alu 1 309 -3 2009 153 40 33 chr1 251731710 251731754 -30461910 + L1MB2 LINE L1 6120 6162 -9 590 207 88 52 chr1 251731761 251731954 -30461710 + L1ME LINE L1 5318 5517 -649 654 202 10 87 chr1 251732314 251732522 -30461142 + MIR SINE MIR 71 262 0 461 259 26 49 chr1 251732568 251732834 -30460830 - L1M4 LINE L1 -2923 3223 2964 872 260 99 71 chr1 251732855 251733324 -30460340 + MLT1G1 LTR MaLR 10 545 -50 1731 136 35 21 chr1 251733324 251733611 -30460053 - L1PB4 LINE L1 -1 6155 5865 872 260 99 71 chr1 251733611 251733664 -30460000 + MLT1G1 LTR MaLR 545 595 0 1678 153 85 3 chr1 251733998 251734338 -30459326 - Charlie1 DNA MER1_type -1 2760 2393 945 144 75 17 chr1 251734355 251734528 -30459136 - Charlie1 DNA MER1_type -800 1961 1779 1612 203 20 0 chr1 251734530 251734831 -30458833 + L1M4b LINE L1 12 318 -6541 1037 156 5 21 chr1 251734833 251735019 -30458645 + L1M4 LINE L1 5323 5505 -679 2412 83 3 6 chr1 251736084 251736397 -30457267 - AluSx SINE Alu 0 312 1 296 269 123 8 chr1 251736950 251737080 -30456584 + MIR SINE MIR 10 154 -108 1905 156 0 22 chr1 251737715 251738029 -30455635 - AluJb SINE Alu -5 307 1 420 279 175 7 chr1 251738675 251738829 -30454835 - MER5A DNA MER1_type 0 189 10 653 263 78 25 chr1 251739292 251739535 -30454129 - MIR SINE MIR 0 262 7 234 0 0 0 chr1 251740336 251740362 -30453302 + (CA)n Simple_repeat Simple_repeat 2 27 0 208 336 28 0 chr1 251740364 251740507 -30453157 + (TA)n Simple_repeat Simple_repeat 2 148 0 2197 187 81 0 chr1 251740947 251741390 -30452274 + L1 LINE L1 3765 4243 -1903 9186 154 33 32 chr1 251741403 251743135 -30450529 + L1P LINE L1 11 1744 -4402 7246 32 2 0 chr1 251743236 251744692 -30448972 - L1PA3 LINE L1 -179 5976 4518 2501 85 3 0 chr1 251744693 251745000 -30448664 - AluSx SINE Alu -4 308 1 184 321 89 14 chr1 251746240 251746406 -30447258 - MIR SINE MIR -11 251 42 23 0 0 0 chr1 251747799 251747822 -30445842 + AT_rich Low_complexity Low_complexity 1 23 0 702 103 47 9 chr1 251747822 251747929 -30445735 - HY1 scRNA scRNA -1 111 1 344 298 105 0 chr1 251748677 251748801 -30444863 + L2 LINE L2 3175 3311 -2 189 298 0 0 chr1 251748937 251748984 -30444680 + L3 LINE CR1 1524 1570 -7 277 243 189 18 chr1 251748992 251749103 -30444561 - L2 LINE L2 0 3313 3184 237 178 0 0 chr1 251749889 251749934 -30443730 + (ATG)n Simple_repeat Simple_repeat 1 45 0 240 35 0 0 chr1 251750176 251750205 -30443459 + (CAA)n Simple_repeat Simple_repeat 2 30 0 219 304 76 0 chr1 251753425 251753504 -30440160 + MIR SINE MIR 69 153 -109 388 258 104 43 chr1 251753986 251754149 -30439515 - MIR SINE MIR -31 231 59 1623 163 23 20 chr1 251754149 251754450 -30439214 + MER33 DNA MER1_type 1 302 -22 287 253 13 0 chr1 251754595 251754674 -30438990 - MER116 DNA Mariner 0 80 1 339 242 105 40 chr1 251755068 251755192 -30438472 - MER69A DNA AcHobo -45 132 1 417 70 0 0 chr1 251756414 251756471 -30437193 + (TA)n Simple_repeat Simple_repeat 2 58 0 2238 108 67 25 chr1 251757010 251757370 -30436294 + THE1C LTR MaLR 1 375 0 318 333 68 8 chr1 251757462 251757579 -30436085 + MIR3 SINE MIR 51 174 -34 271 258 11 65 chr1 251757578 251757671 -30435993 + L2 LINE L2 3226 3313 0 * 216 0 0 0 chr1 251757915 251757939 -30435725 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 1906 202 31 8 chr1 251758113 251758469 -30435195 - MLT1A1 LTR MaLR 0 365 2 1849 167 9 83 chr1 251758800 251759220 -30434444 - MLT1B LTR MaLR -1 389 1 290 255 32 32 chr1 251759491 251759585 -30434079 + MER5A DNA MER1_type 23 116 -73 22 0 0 0 chr1 251760368 251760390 -30433274 + AT_rich Low_complexity Low_complexity 1 22 0 208 235 163 10 chr1 251760682 251760780 -30432884 + MIR SINE MIR 139 251 -11 2007 123 48 0 chr1 251762500 251762792 -30430872 + AluSx SINE Alu 1 306 -6 2412 73 0 3 chr1 251762794 251763097 -30430567 + AluY SINE Alu 1 302 -9 2402 84 0 13 chr1 251763823 251764131 -30429533 - AluY SINE Alu -7 304 1 190 286 113 75 chr1 251764335 251764366 -30429298 + MIR SINE MIR 124 152 -110 2441 60 0 10 chr1 251764366 251764666 -30428998 - AluSc SINE Alu -12 297 1 190 286 113 75 chr1 251764666 251764767 -30428897 + MIR SINE MIR 152 261 -1 1095 202 26 31 chr1 251764910 251764970 -30428694 - MER33 DNA MER1_type -2262 323 264 1178 170 192 38 chr1 251764970 251765340 -30428324 + MSTC LTR MaLR 1 427 -1 1095 202 26 31 chr1 251765340 251765632 -30428032 - MER33 DNA MER1_type -2321 264 1 5661 83 7 4 chr1 251765748 251766593 -30427071 + L1MA1 LINE L1 5228 6077 -225 228 35 0 0 chr1 251769024 251769053 -30424611 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2061 104 4 0 chr1 251769053 251769332 -30424332 - AluSx SINE Alu -32 280 1 986 224 24 0 chr1 251769714 251769924 -30423740 + MER20 DNA MER1_type 5 219 0 1551 135 3 107 chr1 251769999 251770326 -30423338 + AluJb SINE Alu 5 297 -15 227 292 31 88 chr1 251770372 251770564 -30423100 + L2 LINE L2 3129 3309 -4 258 32 0 0 chr1 251773173 251773204 -30420460 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1723 154 3 67 chr1 251773895 251774207 -30419457 + AluJo SINE Alu 1 292 -20 3905 258 83 28 chr1 251774316 251775578 -30418086 + ERVL LTR ERVL 3654 4985 -779 968 269 103 19 chr1 251775585 251775897 -30417767 + MLT2F LTR ERVL 322 659 -4 600 269 113 0 chr1 251775909 251776095 -30417569 + MIR SINE MIR 56 262 0 193 229 21 21 chr1 251776128 251776176 -30417488 - MIR3 SINE MIR -4 204 157 353 345 29 53 chr1 251776865 251777036 -30416628 + MIR SINE MIR 46 212 -50 1729 198 31 26 chr1 251777067 251777451 -30416213 + MER58D DNA MER1_type 1 386 0 23 0 0 0 chr1 251777735 251777758 -30415906 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 251778651 251778673 -30414991 + AT_rich Low_complexity Low_complexity 1 22 0 575 285 58 14 chr1 251780043 251780250 -30413414 + MIR SINE MIR 13 228 -34 1228 174 17 93 chr1 251781640 251781820 -30411844 - MER33 DNA MER1_type -2266 319 127 1724 164 145 16 chr1 251781820 251782199 -30411465 - MSTA LTR MaLR 0 428 1 2519 78 0 0 chr1 251782209 251782516 -30411148 - AluSc SINE Alu -2 307 1 1228 174 17 93 chr1 251782516 251782669 -30410995 - MER33 DNA MER1_type -2467 118 1 314 278 43 26 chr1 251782714 251782829 -30410835 - L3b LINE CR1 -155 1428 1312 713 292 28 56 chr1 251783019 251783375 -30410289 - L3 LINE CR1 -794 783 438 259 338 22 29 chr1 251784380 251784516 -30409148 - L3 LINE CR1 -108 1469 1335 2078 132 0 0 chr1 251786607 251786948 -30406716 - AluSg SINE Alu 0 341 1 180 0 0 0 chr1 251786951 251786971 -30406693 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1975 121 3 47 chr1 251786973 251787271 -30406393 - AluSc SINE Alu -24 285 1 2102 120 37 0 chr1 251787838 251788137 -30405527 + AluSx SINE Alu 1 310 -2 1010 260 48 0 chr1 251788427 251788677 -30404987 - MIR SINE MIR 0 262 1 1866 158 0 7 chr1 251788770 251789094 -30404570 + AluSx SINE Alu 1 322 0 376 308 91 36 chr1 251789217 251789387 -30404277 - L1ME4a LINE L1 -2 6119 5960 6551 127 38 44 chr1 251789387 251790624 -30403040 + Tigger3b DNA MER2_type 2 1231 0 376 308 91 36 chr1 251790624 251790761 -30402903 - L1ME4a LINE L1 -161 5960 5795 1088 68 0 8 chr1 251790804 251790936 -30402728 - AluY SINE Alu -180 131 1 21 0 0 0 chr1 251790957 251790978 -30402686 + AT_rich Low_complexity Low_complexity 1 21 0 180 376 106 16 chr1 251791115 251791304 -30402360 + L2 LINE L2 2772 2977 -337 2310 98 0 22 chr1 251792310 251792626 -30401038 + AluSc SINE Alu 1 309 0 263 338 46 11 chr1 251792711 251792834 -30400830 - MIR3 SINE MIR -25 183 56 251 245 194 20 chr1 251793122 251793220 -30400444 + L2 LINE L2 3157 3271 -1 651 306 35 75 chr1 251794652 251795103 -30398561 + L2 LINE L2 1614 2046 -1268 735 242 70 74 chr1 251795168 251795453 -30398211 + L2 LINE L2 3030 3313 0 572 126 8 0 chr1 251795599 251795718 -30397946 + (TTCC)n Simple_repeat Simple_repeat 2 121 0 2291 115 0 3 chr1 251795718 251796031 -30397633 - AluSx SINE Alu 0 312 1 635 219 0 15 chr1 251796038 251796175 -30397489 + MER58B DNA MER1_type 207 341 0 791 288 19 5 chr1 251796198 251796410 -30397254 + MIR SINE MIR 2 216 -46 691 172 92 18 chr1 251797231 251797394 -30396270 - FRAM SINE Alu -6 170 1 455 297 18 126 chr1 251797518 251797851 -30395813 + L2 LINE L2 2941 3237 -35 279 313 12 0 chr1 251797921 251798004 -30395660 - L2 LINE L2 -4 3309 3226 409 296 148 6 chr1 251798683 251798845 -30394819 - MIR3 SINE MIR -3 205 21 3741 129 14 8 chr1 251800241 251800862 -30392802 - MER39B LTR ERV1 -28 625 1 204 97 0 0 chr1 251801439 251801470 -30392194 + (GA)n Simple_repeat Simple_repeat 2 32 0 252 239 14 14 chr1 251801867 251801938 -30391726 + (TA)n Simple_repeat Simple_repeat 2 72 0 338 269 42 25 chr1 251802180 251802299 -30391365 - MIR SINE MIR 0 262 142 32 0 0 0 chr1 251802345 251802377 -30391287 + AT_rich Low_complexity Low_complexity 1 32 0 235 294 57 42 chr1 251802402 251802517 -30391147 - MIR SINE MIR -71 137 12 2151 102 0 0 chr1 251804923 251805240 -30388424 + AluSx SINE Alu 1 317 0 360 242 20 13 chr1 251805286 251805439 -30388225 + (TATATG)n Simple_repeat Simple_repeat 6 159 0 576 318 47 35 chr1 251805511 251805769 -30387895 + MIR SINE MIR 2 262 0 204 125 0 0 chr1 251805809 251805841 -30387823 + (TCCCC)n Simple_repeat Simple_repeat 4 35 0 287 311 74 7 chr1 251806728 251806876 -30386788 + L1ME4a LINE L1 5621 5778 -343 337 248 7 44 chr1 251806953 251807090 -30386574 + L1MB8 LINE L1 6045 6176 -2 371 265 80 20 chr1 251807156 251807307 -30386357 + L1ME4a LINE L1 5957 6116 -5 661 292 64 13 chr1 251807455 251807688 -30385976 - MIR SINE MIR -14 248 4 207 368 148 13 chr1 251809194 251809349 -30384315 + L2 LINE L2 3089 3264 -8 443 282 19 45 chr1 251809484 251809640 -30384024 - MIR SINE MIR -56 206 55 246 232 155 35 chr1 251809822 251809964 -30383700 - L1MC5 LINE L1 -48 7913 7755 389 326 54 0 chr1 251810599 251810728 -30382936 - L2 LINE L2 0 3272 3137 230 274 95 21 chr1 251810815 251810910 -30382754 - MIR SINE MIR -149 113 12 2134 97 0 4 chr1 251811066 251811345 -30382319 + AluY SINE Alu 21 298 -13 1748 197 14 0 chr1 251811593 251811887 -30381777 - AluJo SINE Alu -14 298 1 375 207 18 32 chr1 251812118 251812256 -30381408 - MLT1L LTR MaLR -375 136 1 2320 123 6 3 chr1 251812882 251813231 -30380433 - THE1B LTR MaLR 0 364 15 2272 99 3 0 chr1 251813337 251813639 -30380025 + AluY SINE Alu 1 303 -8 1585 98 0 0 chr1 251813797 251814000 -30379664 + AluY SINE Alu 91 293 -18 978 267 129 19 chr1 251814180 251814592 -30379072 - L2 LINE L2 0 3313 2857 2014 189 17 12 chr1 251814625 251815037 -30378627 - LOR1b LTR ERV1 0 461 48 2708 98 86 7 chr1 251815052 251815493 -30378171 - L1PA13 LINE L1 0 6163 5688 1914 151 62 14 chr1 251815493 251815851 -30377813 + THE1C LTR MaLR 1 375 0 6617 119 47 17 chr1 251815851 251816956 -30376708 + THE1C-int LTR MaLR 1 1138 -442 2364 73 0 6 chr1 251816956 251817285 -30376379 - pTR5 LTR ERV1 -2046 392 66 280 276 10 0 chr1 251817285 251817383 -30376281 - LTR30 LTR ERV1 -80 642 544 329 100 0 0 chr1 251817383 251817433 -30376231 - pTR5 LTR ERV1 -413 2025 1976 664 101 55 0 chr1 251817433 251817542 -30376122 + THE1-int LTR MaLR 1419 1533 -47 1795 168 42 14 chr1 251817543 251817901 -30375763 - THE1C LTR MaLR -7 368 1 343 84 99 14 chr1 251817901 251817972 -30375692 - THE1C-int LTR MaLR 0 1651 1575 755 62 0 144 chr1 251817976 251818122 -30375542 + Charlie3 DNA MER1_type 2582 2706 -4 343 241 48 21 chr1 251818174 251818319 -30375345 + L1ME4a LINE L1 5971 6119 -2 397 254 26 26 chr1 251818894 251819008 -30374656 - L2 LINE L2 -513 2801 2688 1088 128 85 0 chr1 251820326 251820490 -30373174 + AluSg/x SINE Alu 128 305 -5 314 264 155 65 chr1 251820669 251820788 -30372876 - MER5B DNA MER1_type -2 176 38 1603 109 45 115 chr1 251820788 251821119 -30372545 - AluYb8 SINE Alu -10 308 1 314 264 155 65 chr1 251821119 251821154 -30372510 - MER5B DNA MER1_type -140 38 8 2077 124 0 40 chr1 251821562 251821884 -30371780 - AluSx SINE Alu -3 309 1 2172 111 40 0 chr1 251822612 251822910 -30370754 + AluSg SINE Alu 1 310 0 625 186 151 58 chr1 251823218 251823315 -30370349 - MER5A DNA MER1_type -1 188 101 2180 103 7 3 chr1 251823315 251823617 -30370047 - AluSc SINE Alu -6 303 1 625 186 151 58 chr1 251823617 251823691 -30369973 - MER5A DNA MER1_type -88 101 1 2211 111 0 3 chr1 251824186 251824484 -30369180 + AluSg SINE Alu 1 297 -13 343 308 75 7 chr1 251826285 251826431 -30367233 - MIR SINE MIR -55 207 52 217 306 69 0 chr1 251827972 251828044 -30365620 + MIR SINE MIR 32 108 -100 * 261 272 131 134 chr1 251828043 251828492 -30365172 - L2 LINE L2 0 3272 2825 2020 149 3 0 chr1 251829612 251829914 -30363750 - AluSx SINE Alu -9 303 1 984 167 0 0 chr1 251830785 251830965 -30362699 + MER53 DNA DNA 1 180 -9 2553 65 3 0 chr1 251831400 251831707 -30361957 - AluY SINE Alu -3 308 1 1113 133 23 138 chr1 251831821 251831872 -30361792 + L1MB3 LINE L1 5722 5777 -406 542 51 13 0 chr1 251831872 251831950 -30361714 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1113 133 23 138 chr1 251831950 251832212 -30361452 + L1MB3 LINE L1 5777 6023 -160 1182 106 0 0 chr1 251832221 251832403 -30361261 - AluSc SINE Alu 0 313 132 192 179 0 0 chr1 251834646 251834685 -30358979 + A-rich Low_complexity Low_complexity 1 39 0 273 57 0 0 chr1 251835509 251835544 -30358120 + (CA)n Simple_repeat Simple_repeat 2 36 0 2372 68 44 0 chr1 251835675 251835969 -30357695 + AluY SINE Alu 1 307 -4 260 282 173 9 chr1 251836171 251836281 -30357383 - L2 LINE L2 0 3313 3186 240 369 54 23 chr1 251837852 251837982 -30355682 + L2 LINE L2 3134 3267 -5 950 300 58 20 chr1 251839922 251840269 -30353395 - L3 LINE CR1 -1 1576 1217 384 319 17 0 chr1 251840278 251840394 -30353270 - L3 LINE CR1 -670 907 790 277 332 45 9 chr1 251840395 251840615 -30353049 + L1ME4a LINE L1 5355 5582 -2226 342 278 209 0 chr1 251840628 251840815 -30352849 + L1ME4a LINE L1 5624 5849 -272 21 0 0 0 chr1 251840896 251840917 -30352747 + AT_rich Low_complexity Low_complexity 1 21 0 387 319 0 42 chr1 251841049 251841193 -30352471 - L3 LINE CR1 -823 754 617 2333 66 40 7 chr1 251841487 251841788 -30351876 - AluY SINE Alu 0 311 1 401 219 7 103 chr1 251841842 251841928 -30351736 - MIR SINE MIR -4 258 190 2593 43 0 3 chr1 251841928 251842228 -30351436 - AluY SINE Alu -12 299 1 401 219 7 103 chr1 251842228 251842287 -30351377 - MIR SINE MIR -72 190 127 331 298 118 67 chr1 251842572 251842887 -30350777 - L2 LINE L2 -421 2893 2563 1847 197 22 6 chr1 251843095 251843451 -30350213 + MLT1A1 LTR MaLR 1 362 -3 726 275 56 47 chr1 251843499 251843837 -30349827 + MER115 DNA AcHobo 345 685 -8 384 299 100 13 chr1 251843844 251844075 -30349589 - L2 LINE L2 -769 2545 2295 1981 144 0 3 chr1 251844502 251844794 -30348870 - AluJb SINE Alu -21 291 1 2191 76 7 0 chr1 251844826 251845102 -30348562 + AluY SINE Alu 1 278 -33 948 244 172 3 chr1 251845903 251846211 -30347453 - MER69 DNA AcHobo -2166 360 1 1567 191 45 22 chr1 251847221 251847578 -30346086 + MLT1A1 LTR MaLR 1 365 0 7814 193 30 50 chr1 251847583 251849332 -30344332 + MLT1A1-int LTR MaLR 20 1733 -2 1509 192 79 23 chr1 251849335 251849678 -30343986 + MLT1A1 LTR MaLR 2 363 -2 26 64 0 0 chr1 251849958 251850005 -30343659 + AT_rich Low_complexity Low_complexity 1 47 0 257 169 17 0 chr1 251850146 251850205 -30343459 + (TG)n Simple_repeat Simple_repeat 2 61 0 35 24 0 0 chr1 251850268 251850310 -30343354 + AT_rich Low_complexity Low_complexity 1 42 0 2399 80 0 0 chr1 251850317 251850616 -30343048 + AluY SINE Alu 1 299 -12 926 205 43 9 chr1 251850621 251850831 -30342833 - U3 snRNA snRNA 0 217 1 2263 122 0 0 chr1 251851008 251851311 -30342353 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr1 251851394 251851415 -30342249 + AT_rich Low_complexity Low_complexity 1 21 0 542 305 7 0 chr1 251853349 251853503 -30340161 - MIR3 SINE MIR -7 201 47 336 220 156 18 chr1 251853778 251853887 -30339777 + L2 LINE L2 3186 3309 -4 1182 237 28 11 chr1 251854096 251854379 -30339285 - MSTD LTR MaLR 0 396 109 1856 146 10 24 chr1 251854459 251854754 -30338910 - AluSx SINE Alu -21 291 1 242 233 68 0 chr1 251854758 251854831 -30338833 - L1ME3A LINE L1 -11 6159 6082 314 224 45 0 chr1 251855358 251855425 -30338239 - MER91B DNA MER1_type -119 71 2 244 149 21 21 chr1 251856094 251856141 -30337523 + L2 LINE L2 3267 3313 0 202 303 141 49 chr1 251856157 251856299 -30337365 - L2 LINE L2 -602 2712 2558 265 252 194 10 chr1 251856697 251856800 -30336864 + L3 LINE CR1 904 1025 -552 260 115 19 19 chr1 251856813 251856865 -30336799 - MER106A DNA MER1_type 0 236 185 299 372 13 6 chr1 251857716 251857872 -30335792 - L3 LINE CR1 -12 1565 1409 489 254 107 94 chr1 251857918 251858142 -30335522 - MIR SINE MIR -21 241 15 1023 198 40 62 chr1 251858143 251858229 -30335435 - MER34B LTR ERV1 0 585 499 2126 115 3 28 chr1 251858229 251858512 -30335152 + AluSp SINE Alu 1 277 -36 192 40 0 0 chr1 251858512 251858537 -30335127 + (CAA)n Simple_repeat Simple_repeat 3 27 0 2126 115 3 28 chr1 251858537 251858574 -30335090 + AluSp SINE Alu 277 313 0 1023 198 40 62 chr1 251858574 251858873 -30334791 - MER34B LTR ERV1 -86 499 188 498 276 133 15 chr1 251858970 251859173 -30334491 - L3 LINE CR1 -285 1292 1066 21 0 0 0 chr1 251859548 251859569 -30334095 + AT_rich Low_complexity Low_complexity 1 21 0 461 201 237 21 chr1 251859660 251859854 -30333810 + MER106A DNA MER1_type 1 236 0 364 208 188 0 chr1 251859868 251859969 -30333695 - L3 LINE CR1 -554 1023 904 2162 74 0 11 chr1 251860987 251861295 -30332369 - AluY SINE Alu 0 305 1 2055 96 0 48 chr1 251861323 251861616 -30332048 + AluSg SINE Alu 17 295 -15 2523 242 127 123 chr1 251862016 251863660 -30330004 + L2 LINE L2 1 1637 -1677 7027 50 98 0 chr1 251863660 251864547 -30329117 - L1PA7 LINE L1 -17 6137 5236 228 32 0 0 chr1 251864547 251864578 -30329086 + U3 snRNA snRNA 8 38 -179 2038 129 10 0 chr1 251864588 251864883 -30328781 - AluSx SINE Alu -14 298 1 2523 242 127 123 chr1 251864883 251865066 -30328598 + L2 LINE L2 1645 1877 -1437 336 102 0 0 chr1 251866354 251866403 -30327261 + (T)n Simple_repeat Simple_repeat 1 49 0 213 205 0 0 chr1 251867203 251867242 -30326422 + (CATA)n Simple_repeat Simple_repeat 2 40 0 261 0 0 0 chr1 251867242 251867271 -30326393 + (TG)n Simple_repeat Simple_repeat 2 30 0 727 310 25 29 chr1 251867909 251868154 -30325510 + MIR SINE MIR 19 262 0 189 0 0 0 chr1 251868875 251868896 -30324768 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 4018 30 0 0 chr1 251868905 251869377 -30324287 - L1PA3 LINE L1 -2 6153 5682 3800 21 4 0 chr1 251869377 251870138 -30323526 + L1PA3 LINE L1 4920 5683 -472 2435 75 0 0 chr1 251870712 251871017 -30322647 + AluY SINE Alu 1 305 -6 269 244 49 37 chr1 251871052 251871134 -30322530 - MIR SINE MIR -76 186 104 664 269 109 78 chr1 251871165 251871251 -30322413 + MLT1J LTR MaLR 20 102 -409 2447 64 3 6 chr1 251871251 251871563 -30322101 + AluY SINE Alu 1 311 0 664 269 109 78 chr1 251871563 251871951 -30321713 + MLT1J LTR MaLR 102 509 -2 218 333 0 0 chr1 251871951 251872011 -30321653 - MIR SINE MIR -156 106 47 747 11 0 0 chr1 251872483 251872570 -30321094 + L1PA4 LINE L1 6061 6147 -8 2042 129 4 0 chr1 251872919 251873197 -30320467 + AluSx SINE Alu 1 279 -33 354 308 113 0 chr1 251873443 251873602 -30320062 + L1M4 LINE L1 4639 4815 -1331 1680 236 75 59 chr1 251873689 251874417 -30319247 + L1MC4 LINE L1 6820 7559 -483 502 339 143 20 chr1 251874424 251874866 -30318798 + L2 LINE L2 2474 2969 -345 * 528 347 49 62 chr1 251874836 251875205 -30318459 + L2 LINE L2 2908 3271 -1 2109 141 0 0 chr1 251875341 251875645 -30318019 + AluSg SINE Alu 1 304 -6 3521 225 22 19 chr1 251875657 251876629 -30317035 + L1MC4a LINE L1 6687 7660 -148 201 129 0 0 chr1 251877298 251877329 -30316335 + (GA)n Simple_repeat Simple_repeat 1 31 0 24 53 0 0 chr1 251877488 251877526 -30316138 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr1 251877820 251877849 -30315815 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1 251877892 251877914 -30315750 + AT_rich Low_complexity Low_complexity 1 22 0 1409 135 54 1 chr1 251878689 251878998 -30314666 + MLT2C2 LTR ERVL 1 362 -52 219 69 0 0 chr1 251879001 251879030 -30314634 + (TC)n Simple_repeat Simple_repeat 2 30 0 415 148 23 0 chr1 251879155 251879243 -30314421 + CT-rich Low_complexity Low_complexity 1 90 0 2493 57 7 0 chr1 251879782 251880080 -30313584 - AluY SINE Alu -11 300 1 2528 147 46 32 chr1 251882321 251882657 -30311007 + LTR54 LTR ERV1 1 348 -162 207 0 0 0 chr1 251882657 251882680 -30310984 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2528 147 46 32 chr1 251882680 251882846 -30310818 + LTR54 LTR ERV1 348 510 0 993 173 30 20 chr1 251883755 251883957 -30309707 - MLT1A1 LTR MaLR 0 365 162 381 141 0 0 chr1 251883957 251884042 -30309622 + (GA)n Simple_repeat Simple_repeat 2 86 0 480 219 0 18 chr1 251884042 251884156 -30309508 - MLT1A1 LTR MaLR -185 180 69 295 325 25 8 chr1 251884868 251884988 -30308676 + MIR SINE MIR 60 181 -81 2210 168 54 15 chr1 251886099 251886509 -30307155 + MSTB LTR MaLR 1 426 0 1786 184 0 3 chr1 251886549 251886837 -30306827 - AluJo SINE Alu -25 287 1 312 240 100 20 chr1 251886997 251887097 -30306567 + L2 LINE L2 3198 3305 -8 545 182 23 5 chr1 251887274 251887413 -30306251 + Tigger4(Zombi) DNA MER2_type 1 145 -2586 2510 129 66 2 chr1 251887414 251887856 -30305808 + Tigger4(Zombi) DNA MER2_type 2262 2731 0 2279 218 17 43 chr1 251887857 251888551 -30305113 - L1ME2 LINE L1 -57 6501 5826 2377 66 7 13 chr1 251888551 251888852 -30304812 - AluY SINE Alu -12 299 1 2151 235 96 3 chr1 251888896 251889603 -30304061 - L1ME2 LINE L1 -1037 5503 4731 284 70 23 0 chr1 251889610 251889653 -30304011 + (CA)n Simple_repeat Simple_repeat 1 44 0 448 227 117 0 chr1 251889672 251889826 -30303838 - MER21B LTR ERV1 -57 806 635 1318 258 78 54 chr1 251889833 251890336 -30303328 - MER21B LTR ERV1 -348 515 1 370 208 164 6 chr1 251890375 251890534 -30303130 - L1ME2 LINE L1 -2751 3789 3606 * 378 193 48 69 chr1 251890531 251890676 -30302988 - L1ME2 LINE L1 -4594 1946 1805 428 271 100 31 chr1 251890748 251891345 -30302319 - L1M4 LINE L1 -3568 3076 2461 419 298 28 0 chr1 251891528 251891706 -30301958 - L1M4 LINE L1 -4615 2210 2028 708 314 65 74 chr1 251891712 251892269 -30301395 - L1M4 LINE L1 -4697 1947 1302 207 114 0 0 chr1 251892373 251892408 -30301256 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr1 251892739 251892759 -30300905 + (A)n Simple_repeat Simple_repeat 1 20 0 305 306 20 31 chr1 251893648 251893746 -30299918 - MER5A DNA MER1_type -43 146 50 392 336 25 47 chr1 251894283 251894604 -30299060 + L3 LINE CR1 1260 1573 -4 1965 160 9 26 chr1 251895836 251896179 -30297485 - MER1B DNA MER1_type 0 337 1 192 321 127 42 chr1 251896803 251896968 -30296696 - MIR3 SINE MIR -23 185 7 495 305 150 0 chr1 251898770 251898996 -30294668 + MIR SINE MIR 3 262 0 1932 152 3 7 chr1 251900102 251900392 -30293272 + AluSx SINE Alu 1 289 -23 1754 203 71 17 chr1 251900541 251901008 -30292656 + MLT1D LTR MaLR 1 492 -13 24 32 0 0 chr1 251901214 251901245 -30292419 + AT_rich Low_complexity Low_complexity 1 31 0 2363 155 29 19 chr1 251901806 251902226 -30291438 - MSTB LTR MaLR 0 426 3 323 336 9 0 chr1 251902249 251902365 -30291299 + L2 LINE L2 1810 1926 -1388 34 24 0 0 chr1 251902514 251902555 -30291109 + AT_rich Low_complexity Low_complexity 1 41 0 2694 95 55 21 chr1 251902560 251902993 -30290671 + LTR7 LTR ERV1 1 448 -2 1727 77 0 0 chr1 251902995 251903242 -30290422 + HERVH LTR ERV1 1 247 -7466 1961 72 56 0 chr1 251903242 251903547 -30290117 - HERVH LTR ERV1 -68 7645 7324 1324 124 18 5 chr1 251903547 251903764 -30289900 - HERVH LTR ERV1 -1894 5819 5600 3989 147 5 1 chr1 251903765 251904425 -30289239 - HERVH LTR ERV1 -2564 5149 4488 3195 110 6 2 chr1 251904427 251904927 -30288737 - HERVH LTR ERV1 -3720 3993 3492 882 127 7 0 chr1 251904917 251905067 -30288597 - HERVH LTR ERV1 -4423 3290 3140 * 16192 87 28 19 chr1 251905046 251907740 -30285924 - HERVH LTR ERV1 -4718 2995 437 3940 129 48 48 chr1 251907727 251908565 -30285099 - HERVH LTR ERV1 -6875 838 1 * 2660 81 60 21 chr1 251908567 251908998 -30284666 - LTR7 LTR ERV1 -2 448 1 2050 126 0 23 chr1 251909008 251909309 -30284355 + AluSx SINE Alu 1 294 -18 255 318 139 8 chr1 251911098 251911227 -30282437 + MIR3 SINE MIR 39 184 -24 180 0 0 0 chr1 251911342 251911362 -30282302 + (A)n Simple_repeat Simple_repeat 1 20 0 2041 197 19 41 chr1 251911901 251912368 -30281296 + MLT1C LTR MaLR 7 463 -4 2212 113 0 0 chr1 251912905 251913189 -30280475 + AluSq SINE Alu 1 284 -29 216 97 0 0 chr1 251913189 251913220 -30280444 + (TA)n Simple_repeat Simple_repeat 2 32 0 271 325 162 17 chr1 251913465 251913582 -30280082 + L2 LINE L2 3117 3250 -22 1890 165 8 5 chr1 251914256 251914626 -30279038 + L1MA8 LINE L1 4916 5286 -860 300 103 86 17 chr1 251914618 251914676 -30278988 + L1P LINE L1 5315 5376 -778 * 2650 142 7 9 chr1 251914674 251915133 -30278531 + L1MA8 LINE L1 5454 5911 -380 1834 161 52 45 chr1 251915133 251915492 -30278172 + MSTB LTR MaLR 1 365 -61 1879 176 3 10 chr1 251915492 251915805 -30277859 - AluSx SINE Alu -1 311 1 1834 161 52 45 chr1 251915805 251915848 -30277816 + MSTB LTR MaLR 365 406 -20 2092 94 67 3 chr1 251915849 251916191 -30277473 + L1MA8 LINE L1 5925 6288 -3 205 337 11 0 chr1 251916824 251916916 -30276748 - MIR SINE MIR -46 216 124 238 376 100 53 chr1 251917210 251917641 -30276023 - L2 LINE L2 -15 3257 2807 858 195 47 47 chr1 251917688 251917878 -30275786 + MER20 DNA MER1_type 1 190 -29 231 326 116 21 chr1 251918584 251918817 -30274847 - L2 LINE L2 -938 2376 2122 309 132 26 26 chr1 251918950 251919026 -30274638 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 393 232 17 23 chr1 251920892 251921069 -30272595 + CT-rich Low_complexity Low_complexity 1 176 0 216 273 0 0 chr1 251921091 251921168 -30272496 + CT-rich Low_complexity Low_complexity 4 80 0 234 0 0 0 chr1 251921428 251921454 -30272210 + (T)n Simple_repeat Simple_repeat 1 26 0 2797 16 0 0 chr1 251921516 251921825 -30271839 - AluYa5 SINE Alu -2 309 1 350 328 31 8 chr1 251924116 251924244 -30269420 - MIR3 SINE MIR -7 201 71 708 255 66 93 chr1 251924244 251924801 -30268863 + MER34 LTR ERV1 1 542 0 201 302 19 66 chr1 251925165 251925271 -30268393 + MIR SINE MIR 5 105 -157 24 0 0 0 chr1 251925480 251925504 -30268160 + AT_rich Low_complexity Low_complexity 1 24 0 321 326 132 31 chr1 251926915 251927142 -30266522 - MIR SINE MIR -12 250 1 207 261 87 33 chr1 251927256 251927304 -30266360 + L3b LINE CR1 1421 1465 -118 2072 112 3 13 chr1 251927304 251927618 -30266046 + AluSx SINE Alu 1 311 -1 207 261 87 33 chr1 251927618 251927661 -30266003 + L3b LINE CR1 1465 1517 -66 231 345 48 18 chr1 251928501 251928669 -30264995 + MLT1K LTR MaLR 140 312 -276 230 193 18 0 chr1 251928874 251928931 -30264733 + (TG)n Simple_repeat Simple_repeat 2 59 0 221 182 23 0 chr1 251929346 251929390 -30264274 + (CAATT)n Simple_repeat Simple_repeat 3 47 0 2279 49 0 7 chr1 251930621 251930945 -30262719 + AluY SINE Alu 1 322 0 225 65 0 0 chr1 251931449 251931480 -30262184 + (CA)n Simple_repeat Simple_repeat 2 32 0 2231 71 0 7 chr1 251931852 251932157 -30261507 - AluY SINE Alu 0 303 1 683 226 115 87 chr1 251932157 251932721 -30260943 - MLT1F LTR MaLR -3 587 1 4102 166 44 58 chr1 251934010 251935009 -30258655 + L1MD2 LINE L1 5362 6346 -13 2318 91 3 0 chr1 251935402 251935699 -30257965 + AluSp SINE Alu 1 298 -15 29 47 0 0 chr1 251936045 251936088 -30257576 + AT_rich Low_complexity Low_complexity 1 43 0 351 307 102 31 chr1 251936109 251936655 -30257009 + L1MC4a LINE L1 5751 6362 -1446 24853 140 9 10 chr1 251936704 251941865 -30251799 - L1PA8A LINE L1 -2 6444 1227 216 67 0 0 chr1 251941865 251941895 -30251769 + (TTG)n Simple_repeat Simple_repeat 1 30 0 24853 140 9 10 chr1 251941895 251943120 -30250544 - L1PA8A LINE L1 -5219 1227 2 2107 134 51 13 chr1 251943198 251943570 -30250094 + MER61D LTR ERV1 116 501 0 756 221 39 26 chr1 251943588 251943896 -30249768 + L1MC5 LINE L1 7615 7926 -35 756 157 20 0 chr1 251943912 251944065 -30249599 + L1P LINE L1 5254 5409 -757 385 297 0 0 chr1 251944573 251944684 -30248980 - MER94 DNA DNA 0 134 24 4450 128 32 15 chr1 251945612 251946352 -30247312 + L1PA16 LINE L1 5411 6163 -3 243 350 82 5 chr1 251946731 251946925 -30246739 + MIR SINE MIR 44 252 -10 26 0 0 0 chr1 251949021 251949047 -30244617 + AT_rich Low_complexity Low_complexity 1 26 0 433 299 94 36 chr1 251949577 251949801 -30243863 - MIR SINE MIR -16 246 10 248 202 39 132 chr1 251949900 251950029 -30243635 - L2 LINE L2 0 3272 3156 266 192 48 48 chr1 251950072 251950176 -30243488 - L2 LINE L2 -88 3225 3122 194 62 31 0 chr1 251950282 251950314 -30243350 + (TAA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chr1 251951543 251951563 -30242101 + (T)n Simple_repeat Simple_repeat 1 20 0 525 257 4 12 chr1 251952199 251952366 -30241298 + Zaphod DNA AcHobo 1 165 -632 1157 201 94 3 chr1 251952366 251952665 -30240999 - MER45B DNA AcHobo 0 1040 715 1029 268 110 67 chr1 251952856 251953376 -30240288 - MER45C DNA AcHobo -264 689 134 2269 81 0 31 chr1 251953376 251953697 -30239967 + AluY SINE Alu 1 311 0 1029 268 110 67 chr1 251953697 251953830 -30239834 - MER45C DNA AcHobo -819 134 8 741 290 39 18 chr1 251953828 251953992 -30239672 + Zaphod DNA AcHobo 158 332 -3699 * 234 0 0 0 chr1 251953992 251954018 -30239646 + (TG)n Simple_repeat Simple_repeat 2 27 0 741 290 39 18 chr1 251954018 251954132 -30239532 + Zaphod DNA AcHobo 332 442 -3589 47 33 0 0 chr1 251954132 251954193 -30239471 + AT_rich Low_complexity Low_complexity 1 61 0 494 247 7 45 chr1 251954353 251954516 -30239148 - MER52A LTR ERV1 -12 489 345 607 192 26 188 chr1 251954529 251954811 -30238853 - LTR28 LTR ERV1 -861 894 2 1022 212 72 36 chr1 251954815 251955259 -30238405 + Zaphod DNA AcHobo 462 921 -3110 1265 157 50 25 chr1 251955285 251955604 -30238060 + Zaphod DNA AcHobo 3610 3936 -95 25 0 0 0 chr1 251956323 251956348 -30237316 + AT_rich Low_complexity Low_complexity 1 25 0 700 91 10 0 chr1 251956356 251956455 -30237209 - L1P LINE L1 -1524 4622 4523 1794 173 0 0 chr1 251956455 251956726 -30236938 - AluSx SINE Alu -41 271 1 709 238 0 0 chr1 251956746 251956893 -30236771 - LTR40a LTR ERVL -372 147 1 607 268 114 47 chr1 251957155 251957688 -30235976 + L1MEd LINE L1 657 1225 -4894 22257 120 14 12 chr1 251957785 251961243 -30232421 - L1PA7 LINE L1 0 6154 2704 2214 104 0 10 chr1 251961243 251961541 -30232123 + AluY SINE Alu 1 295 -16 22257 120 14 12 chr1 251961541 251963614 -30230050 - L1PA7 LINE L1 -3450 2704 636 1003 115 19 0 chr1 251963630 251963786 -30229878 + L1P3 LINE L1 360 518 -5943 21 36 0 0 chr1 251963958 251963986 -30229678 + AT_rich Low_complexity Low_complexity 1 28 0 304 277 64 0 chr1 251964020 251964114 -30229550 + MIR SINE MIR 151 250 -12 186 348 33 11 chr1 251964699 251964791 -30228873 - MIR SINE MIR -113 149 56 677 297 115 43 chr1 251964800 251965522 -30228142 - L2 LINE L2 -7 3306 2538 454 327 118 48 chr1 251965638 251966011 -30227653 + L2 LINE L2 2852 3250 -22 643 362 31 4 chr1 251966014 251966268 -30227396 - MIR SINE MIR 0 262 2 328 293 0 0 chr1 251966768 251966850 -30226814 + L2 LINE L2 3230 3311 -2 197 278 111 37 chr1 251967557 251967665 -30225999 - L2 LINE L2 -46 3267 3152 216 195 24 0 chr1 251968099 251968140 -30225524 + (ATG)n Simple_repeat Simple_repeat 3 44 0 295 322 25 25 chr1 251968293 251968414 -30225250 - L3 LINE CR1 -7 1570 1450 203 310 0 0 chr1 251971448 251971506 -30222158 + MIR SINE MIR 165 222 -40 850 257 0 14 chr1 251971672 251971894 -30221770 + MER20 DNA MER1_type 1 219 0 1505 186 75 17 chr1 251973118 251973532 -30220132 - L1MB8 LINE L1 -2 6176 5739 252 185 0 0 chr1 251974753 251974807 -30218857 + CT-rich Low_complexity Low_complexity 1 54 0 310 185 0 19 chr1 251974888 251974942 -30218722 + L2 LINE L2 3249 3301 -12 708 193 6 11 chr1 251975901 251976077 -30217587 + CT-rich Low_complexity Low_complexity 3 177 0 2009 156 0 3 chr1 251976429 251976762 -30216902 + MLT1A1 LTR MaLR 34 365 0 320 0 25 0 chr1 251976846 251976886 -30216778 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2215 109 0 0 chr1 251976890 251977174 -30216490 - AluSx SINE Alu -24 288 5 951 263 138 24 chr1 251977278 251977681 -30215983 + L1MC4a LINE L1 5433 5895 -1913 1938 65 29 0 chr1 251977681 251977927 -30215737 + AluYb8 SINE Alu 53 305 -13 951 263 138 24 chr1 251977927 251977980 -30215684 + L1MC4a LINE L1 5895 5941 -1867 2529 51 3 6 chr1 251978956 251979267 -30214397 + AluY SINE Alu 1 310 -1 1415 225 125 42 chr1 251979374 251979871 -30213793 + MLT1F LTR MaLR 1 538 -4 2409 70 3 16 chr1 251980332 251980647 -30213017 - AluY SINE Alu 0 311 1 207 231 77 46 chr1 251981104 251981144 -30212520 - MER5B DNA MER1_type 0 178 134 3923 138 16 3 chr1 251981144 251981782 -30211882 + L1PA16 LINE L1 5512 6157 -9 201 286 13 52 chr1 251981782 251981859 -30211805 + MER5B DNA MER1_type 17 90 -88 258 264 14 0 chr1 251981941 251982013 -30211651 - Charlie8 DNA MER1_type -2344 73 1 21 71 0 0 chr1 251982820 251982862 -30210802 + AT_rich Low_complexity Low_complexity 1 42 0 209 299 60 15 chr1 251982958 251983025 -30210639 + MIR SINE MIR 45 114 -94 909 22 44 0 chr1 251985346 251985482 -30208182 + (TCTA)n Simple_repeat Simple_repeat 4 145 0 520 118 20 26 chr1 251985501 251985653 -30208011 + (TCTA)n Simple_repeat Simple_repeat 4 154 0 190 293 17 0 chr1 251985800 251985860 -30207804 + MIR SINE MIR 103 162 -62 194 203 34 51 chr1 251986332 251986391 -30207273 + MIR SINE MIR 193 250 -12 185 318 0 0 chr1 251986360 251986404 -30207260 + L2 LINE L2 3265 3308 -5 * 262 298 81 43 chr1 251986783 251987041 -30206623 - Tigger8 DNA MER2_type -384 282 15 432 0 0 0 chr1 251987492 251987540 -30206124 + (TC)n Simple_repeat Simple_repeat 1 48 0 292 283 126 20 chr1 251987608 251987806 -30205858 + L2 LINE L2 1813 2031 -1283 288 0 0 0 chr1 251987843 251987875 -30205789 + (TG)n Simple_repeat Simple_repeat 2 33 0 489 259 146 9 chr1 251987919 251988139 -30205525 - L2 LINE L2 -144 3169 2920 * 1015 252 56 81 chr1 251988128 251988537 -30205127 - L2 LINE L2 -552 2762 2364 239 135 135 0 chr1 251988541 251988593 -30205071 - LTR40a LTR ERVL -4 515 457 240 267 0 0 chr1 251988942 251989017 -30204647 + MLT1L LTR MaLR 537 611 -4 1109 301 90 44 chr1 251989347 251990074 -30203590 - L2 LINE L2 -12 3301 2460 295 272 148 71 chr1 251991903 251992282 -30201382 + MLT1K LTR MaLR 139 546 -42 350 220 67 20 chr1 251992878 251993028 -30200636 - L1ME4a LINE L1 -25 6096 5940 22 35 0 0 chr1 251993032 251993061 -30200603 + AT_rich Low_complexity Low_complexity 1 29 0 492 302 93 11 chr1 251993277 251993459 -30200205 + MIR SINE MIR 47 243 -19 197 330 78 10 chr1 251995919 251996022 -30197642 + MIR SINE MIR 45 154 -108 28 29 0 0 chr1 251996208 251996243 -30197421 + AT_rich Low_complexity Low_complexity 1 35 0 207 139 0 0 chr1 251996316 251996352 -30197312 + (A)n Simple_repeat Simple_repeat 1 36 0 419 320 29 29 chr1 251996599 251996771 -30196893 - MER5A DNA MER1_type -8 181 10 26 30 0 0 chr1 251998232 251998265 -30195399 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr1 251998324 251998345 -30195319 + AT_rich Low_complexity Low_complexity 1 21 0 6589 144 10 5 chr1 252000204 252001974 -30191690 - L1MA3 LINE L1 0 7724 5943 3152 107 5 2 chr1 252001974 252002421 -30191243 + LTR2 LTR ERV1 1 448 -1 16577 178 19 31 chr1 252002422 252006033 -30187631 + Harlequin LTR ERV1 1 3580 -4233 3521 152 3 46 chr1 252006174 252006832 -30186832 + Harlequin LTR ERV1 3590 4219 -3594 * 9337 161 1 2 chr1 252006830 252008366 -30185298 + Harlequin LTR ERV1 4437 5970 -1843 1807 88 0 0 chr1 252008366 252008615 -30185049 + LTR2 LTR ERV1 201 449 0 11817 163 27 25 chr1 252008615 252009803 -30183861 - L1MA3 LINE L1 -1620 5945 4761 2455 57 3 10 chr1 252009803 252010104 -30183560 - AluY SINE Alu -12 299 1 11817 163 27 25 chr1 252010104 252011195 -30182469 - L1MA3 LINE L1 -2804 4761 3674 1879 151 3 26 chr1 252011195 252011507 -30182157 - AluSx SINE Alu -7 305 1 11817 163 27 25 chr1 252011507 252014059 -30179605 - L1MA3 LINE L1 -3891 3674 841 2065 75 57 14 chr1 252014059 252014338 -30179326 - AluY SINE Alu -16 295 5 11817 163 27 25 chr1 252014338 252015167 -30178497 - L1MA3 LINE L1 -6724 841 15 509 279 80 50 chr1 252015264 252015900 -30177764 + L1MC5 LINE L1 7162 7657 -304 2360 89 0 10 chr1 252015900 252016203 -30177461 - AluSc SINE Alu -7 302 3 509 279 80 50 chr1 252016203 252016334 -30177330 + L1MC5 LINE L1 7657 7783 -178 2165 125 141 5 chr1 252016383 252016758 -30176906 - MSTA LTR MaLR -2 426 1 25 31 0 0 chr1 252017491 252017523 -30176141 + AT_rich Low_complexity Low_complexity 1 32 0 346 236 22 0 chr1 252019499 252019588 -30174076 - MER117 DNA MER1_type -65 132 42 299 384 33 7 chr1 252020271 252020422 -30173242 + L2 LINE L2 2894 3048 -224 24 32 0 0 chr1 252021404 252021435 -30172229 + AT_rich Low_complexity Low_complexity 1 31 0 392 181 14 0 chr1 252022213 252022285 -30171379 - L2 LINE L2 -6 3307 3235 185 267 17 17 chr1 252023277 252023337 -30170327 - L2 LINE L2 -19 3253 3194 2142 210 132 31 chr1 252023521 252024106 -30169558 - MLT1E1 LTR MaLR -10 644 1 247 350 88 44 chr1 252024285 252024487 -30169177 + L2 LINE L2 2637 2829 -443 1740 208 50 12 chr1 252024487 252024886 -30168778 + MLT2D LTR ERVL 1 414 0 247 350 88 44 chr1 252024886 252025094 -30168570 + L2 LINE L2 2829 3059 -213 742 211 0 0 chr1 252025552 252025675 -30167989 + FLAM_A SINE Alu 1 123 -10 291 352 64 46 chr1 252025692 252026019 -30167645 - L2 LINE L2 -688 2626 2294 342 250 40 0 chr1 252027046 252027122 -30166542 + MIR3 SINE MIR 120 198 -10 214 358 57 16 chr1 252029481 252029604 -30164060 + L2 LINE L2 3144 3271 -1 3613 199 40 20 chr1 252029768 252029864 -30163800 + Charlie1a DNA MER1_type 5 98 -2663 2245 204 89 6 chr1 252029864 252030402 -30163262 - MER119 DNA MER1_type 0 583 1 3613 199 40 20 chr1 252030402 252031166 -30162498 + Charlie1a DNA MER1_type 98 882 -573 596 132 33 0 chr1 252031167 252031288 -30162376 + L1MEc LINE L1 2177 2301 -4095 504 272 70 103 chr1 252031424 252031533 -30162131 - LTR16A1 LTR ERVL 0 457 346 2379 96 3 0 chr1 252031533 252031845 -30161819 + AluSp SINE Alu 1 313 0 504 272 70 103 chr1 252031845 252032162 -30161502 - LTR16A1 LTR ERVL -111 346 45 748 283 128 55 chr1 252032518 252033116 -30160548 - HAL1 LINE L1 -1337 1170 490 2311 69 0 30 chr1 252033116 252033419 -30160245 - AluY SINE Alu -13 298 5 748 283 128 55 chr1 252033419 252033668 -30159996 - HAL1 LINE L1 -2017 490 261 775 320 82 44 chr1 252033831 252034491 -30159173 - L1MEd LINE L1 -3315 2814 2130 21 71 0 0 chr1 252034601 252034643 -30159021 + AT_rich Low_complexity Low_complexity 1 42 0 472 312 110 84 chr1 252034782 252035668 -30157996 - L1MEd LINE L1 -766 1724 681 2028 152 0 0 chr1 252035800 252036083 -30157581 + AluSx SINE Alu 1 283 -29 837 117 0 0 chr1 252036083 252036211 -30157453 + (TA)n Simple_repeat Simple_repeat 2 129 0 880 133 0 0 chr1 252036211 252036331 -30157333 + AluSg/x SINE Alu 165 284 -28 360 0 0 0 chr1 252036331 252036371 -30157293 + (TA)n Simple_repeat Simple_repeat 1 40 0 231 36 0 0 chr1 252036370 252036398 -30157266 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 319 304 22 0 chr1 252036398 252036490 -30157174 + L1MC4 LINE L1 6614 6707 -1335 * 354 229 0 62 chr1 252036420 252036516 -30157148 - L1MC4 LINE L1 -1339 6703 6614 203 337 27 16 chr1 252038251 252038364 -30155300 + MIR SINE MIR 11 126 -82 225 250 0 0 chr1 252038577 252038625 -30155039 + L2 LINE L2 3225 3272 0 1206 232 124 57 chr1 252040729 252041341 -30152323 + MLT1E1 LTR MaLR 1 653 -1 3871 64 229 0 chr1 252041414 252041974 -30151690 + LTR12 LTR ERV1 1 688 0 2302 72 0 7 chr1 252042094 252042385 -30151279 + AluY SINE Alu 1 289 -22 181 283 94 50 chr1 252043562 252043721 -30149943 - L2 LINE L2 -210 3062 2897 2095 135 3 3 chr1 252044855 252045151 -30148513 + AluSg SINE Alu 1 296 -14 340 240 58 19 chr1 252045197 252045301 -30148363 - MIR SINE MIR -84 178 71 2271 70 0 11 chr1 252045669 252045955 -30147709 - AluY SINE Alu -17 294 12 223 301 191 29 chr1 252047883 252048019 -30145645 + MIR SINE MIR 10 167 -95 1978 236 42 51 chr1 252050431 252051053 -30142611 - MLT1E2 LTR MaLR -3 623 8 398 265 95 69 chr1 252051954 252052143 -30141521 - MIR SINE MIR -21 241 48 202 173 115 0 chr1 252053720 252053772 -30139892 + MIR SINE MIR 127 184 -78 293 275 83 9 chr1 252054302 252054411 -30139253 - MIR SINE MIR -71 191 75 394 349 11 11 chr1 252054936 252055111 -30138553 + MIR SINE MIR 34 208 -54 369 0 0 0 chr1 252056219 252056260 -30137404 + (TG)n Simple_repeat Simple_repeat 1 41 0 402 270 10 0 chr1 252056594 252056694 -30136970 - MIR SINE MIR -2 260 160 395 299 39 7 chr1 252056782 252056936 -30136728 + MLT1K LTR MaLR 422 580 -8 386 289 86 8 chr1 252056955 252057083 -30136581 - MIR3 SINE MIR -50 158 21 456 335 63 5 chr1 252057095 252057316 -30136348 - MIR SINE MIR -2 260 27 1785 80 4 72 chr1 252057407 252057669 -30135995 - AluSq SINE Alu -15 298 55 2345 148 16 54 chr1 252058930 252059083 -30134581 + MSTA LTR MaLR 1 158 -270 405 0 0 0 chr1 252059083 252059128 -30134536 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2014 128 0 21 chr1 252059130 252059418 -30134246 - AluSq SINE Alu -31 282 1 2345 148 16 54 chr1 252059418 252059706 -30133958 + MSTA LTR MaLR 159 428 0 308 77 0 0 chr1 252061306 252061358 -30132306 + L1PA15 LINE L1 6114 6165 0 945 149 0 0 chr1 252061500 252061674 -30131990 + L1MA4 LINE L1 6126 6299 -1 2273 220 135 14 chr1 252061831 252062839 -30130825 - L1ME2 LINE L1 -1 6163 5030 8850 118 11 1 chr1 252064063 252065337 -30128327 - HSMAR1 DNA Mariner 0 1287 1 1580 183 92 8 chr1 252065692 252066052 -30127612 - MLT1B LTR MaLR 0 390 1 206 305 0 0 chr1 252066268 252066327 -30127337 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1504 196 42 7 chr1 252066329 252066635 -30127029 + MSTB1 LTR MaLR 116 432 0 2875 237 56 19 chr1 252066649 252066967 -30126697 - L1ME1 LINE L1 -165 6001 5696 2298 83 3 0 chr1 252066967 252067257 -30126407 - AluSx SINE Alu -21 291 1 2875 237 56 19 chr1 252067257 252068381 -30125283 - L1ME1 LINE L1 -470 5696 4506 245 29 118 0 chr1 252068381 252068415 -30125249 - MLT2B1 LTR ERVL 0 520 483 * 257 111 0 0 chr1 252068385 252068421 -30125243 - MLT2D LTR ERVL -8 389 354 531 0 0 0 chr1 252068446 252068505 -30125159 + (TG)n Simple_repeat Simple_repeat 2 60 0 1218 221 32 88 chr1 252068521 252068932 -30124732 - MLT2D LTR ERVL -22 392 5 762 226 58 64 chr1 252069105 252069464 -30124200 - L1ME1 LINE L1 -1632 4514 4158 181 349 113 38 chr1 252069555 252069661 -30124003 + L2 LINE L2 3137 3250 -22 419 293 48 27 chr1 252069978 252070125 -30123539 + MIR SINE MIR 5 154 -108 1019 226 10 63 chr1 252072215 252072516 -30121148 - MLT1D LTR MaLR -220 285 1 2156 122 0 3 chr1 252072904 252073199 -30120465 - AluSc SINE Alu -13 296 3 1493 227 42 8 chr1 252073665 252074018 -30119646 - MLT1A1 LTR MaLR 0 365 1 5572 128 25 12 chr1 252075015 252075412 -30118252 - L1PA15 LINE L1 -2 6866 6475 1931 136 53 17 chr1 252075412 252075713 -30117951 - AluSx SINE Alu 0 312 1 5572 128 25 12 chr1 252075713 252077066 -30116598 - L1PA15 LINE L1 -393 6475 5121 10273 241 21 16 chr1 252077106 252077734 -30115930 - L1PA15 LINE L1 -1860 4989 4365 212 0 36 0 chr1 252077734 252077762 -30115902 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 10273 241 21 16 chr1 252077762 252077777 -30115887 - L1PA15 LINE L1 -2484 4365 4352 1983 132 4 0 chr1 252077777 252078057 -30115607 - AluSq SINE Alu -32 281 1 10273 241 21 16 chr1 252078057 252080509 -30113155 - L1PA15 LINE L1 -2497 4352 1881 1005 233 89 4 chr1 252080515 252080786 -30112878 + MER58B DNA MER1_type 48 341 0 25 0 0 0 chr1 252082208 252082233 -30111431 + AT_rich Low_complexity Low_complexity 1 25 0 362 278 125 53 chr1 252082266 252082586 -30111078 - HAL1 LINE L1 -1 2506 2164 507 233 13 47 chr1 252082630 252082780 -30110884 - HAL1 LINE L1 -518 1989 1845 592 247 119 16 chr1 252083403 252083597 -30110067 + MIR SINE MIR 15 228 -34 1421 272 62 28 chr1 252083630 252084311 -30109353 - HAL1 LINE L1 -797 1710 1007 377 238 48 0 chr1 252084406 252084490 -30109174 - HAL1 LINE L1 -1630 877 790 392 264 38 38 chr1 252084559 252084718 -30108946 + L1ME3A LINE L1 6005 6163 -7 706 316 80 56 chr1 252084887 252085516 -30108148 - HAL1 LINE L1 -1862 645 2 283 197 26 26 chr1 252088360 252088436 -30105228 + (TCTCTG)n Simple_repeat Simple_repeat 3 78 0 478 344 42 63 chr1 252088507 252088888 -30104776 - L2 LINE L2 -74 3198 2826 231 229 29 29 chr1 252089047 252089117 -30104547 - Tigger3(Golem) DNA MER2_type -2176 853 784 418 280 80 58 chr1 252090408 252090633 -30103031 - MIR SINE MIR -21 241 12 453 238 0 0 chr1 252091158 252091263 -30102401 + L1PB4 LINE L1 6045 6149 -7 182 204 0 20 chr1 252091263 252091312 -30102352 + (CATA)n Simple_repeat Simple_repeat 3 50 0 303 335 58 19 chr1 252091692 252091847 -30101817 - MIR SINE MIR -6 256 96 370 256 38 60 chr1 252093181 252093314 -30100350 + MIR SINE MIR 80 209 -53 258 81 0 0 chr1 252093363 252093400 -30100264 + (CTA)n Simple_repeat Simple_repeat 1 37 0 52 0 0 0 chr1 252094195 252094247 -30099417 + AT_rich Low_complexity Low_complexity 1 52 0 265 286 12 12 chr1 252096418 252096502 -30097162 + MIR SINE MIR 179 262 0 3588 73 0 2 chr1 252096897 252097362 -30096302 - L1PA8 LINE L1 -11 6161 5698 5293 96 1 0 chr1 252097362 252098102 -30095562 + L1P LINE L1 3761 4501 -1645 * 14666 85 8 0 chr1 252098098 252100126 -30093538 + L1P LINE L1 2562 4605 -1541 2034 190 10 5 chr1 252101032 252101416 -30092248 - MLT1B LTR MaLR 0 390 5 1797 206 17 3 chr1 252101906 252102256 -30091408 + MLT1A1 LTR MaLR 11 365 0 252 84 70 14 chr1 252103576 252103647 -30090017 + GA-rich Low_complexity Low_complexity 5 79 0 4673 127 16 12 chr1 252104155 252104910 -30088754 - L1PA15 LINE L1 -4 6161 5404 207 343 0 0 chr1 252105086 252105159 -30088505 - L2 LINE L2 0 3313 3241 246 32 0 0 chr1 252105986 252106017 -30087647 + (CA)n Simple_repeat Simple_repeat 2 32 0 2262 185 125 0 chr1 252106161 252106593 -30087071 - MER66B LTR ERV1 0 486 1 291 333 16 47 chr1 252106684 252106813 -30086851 + MIR SINE MIR 88 212 -50 4190 202 44 3 chr1 252107430 252109086 -30084578 + L1MA9 LINE L1 4336 6063 -249 514 281 45 51 chr1 252110495 252110673 -30082991 + MER5B DNA MER1_type 2 178 0 225 159 0 0 chr1 252111699 252111743 -30081921 + GA-rich Low_complexity Low_complexity 2 45 0 354 346 0 9 chr1 252113223 252113330 -30080334 - L2 LINE L2 0 3272 3167 2526 47 0 13 chr1 252113819 252114118 -30079546 - AluY SINE Alu -15 296 2 541 268 0 0 chr1 252114301 252114413 -30079251 - MER81 DNA DNA -2 112 1 308 383 101 8 chr1 252114491 252114618 -30079046 - L2 LINE L2 -780 2534 2420 324 0 0 0 chr1 252114618 252114654 -30079010 + (TG)n Simple_repeat Simple_repeat 2 37 0 308 383 101 8 chr1 252114654 252115012 -30078652 - L2 LINE L2 -894 2420 2004 386 323 83 36 chr1 252115043 252115319 -30078345 + L1ME3A LINE L1 4111 4399 -1747 404 335 12 3 chr1 252115327 252115513 -30078151 - MIR SINE MIR -16 246 6 280 291 99 67 chr1 252115550 252116076 -30077588 + L1ME3A LINE L1 4408 4950 -1196 1149 239 150 18 chr1 252116329 252116710 -30076954 - MSTB2 LTR MaLR 0 457 27 695 249 88 43 chr1 252116748 252117053 -30076611 + L1ME3A LINE L1 5269 5587 -2221 1622 190 0 43 chr1 252117450 252117776 -30075888 + AluJo SINE Alu 1 312 0 500 329 68 41 chr1 252117806 252118694 -30074970 + L1ME3A LINE L1 565 1471 -4658 2147 124 3 0 chr1 252118694 252118993 -30074671 + AluSq SINE Alu 3 302 -11 500 329 68 41 chr1 252118993 252119207 -30074457 + L1ME3A LINE L1 1471 1678 -4451 2222 101 0 3 chr1 252119250 252119547 -30074117 + AluSq SINE Alu 1 296 -17 21 0 0 0 chr1 252119589 252119610 -30074054 + AT_rich Low_complexity Low_complexity 1 21 0 2104 134 116 16 chr1 252119833 252120214 -30073450 + MSTA LTR MaLR 10 428 0 369 250 142 27 chr1 252120233 252120493 -30073171 + L1ME3A LINE L1 4098 4387 -1742 593 289 72 43 chr1 252120612 252120890 -30072774 + L1ME3A LINE L1 4727 4995 -1134 2289 99 0 0 chr1 252120890 252121183 -30072481 + AluSg SINE Alu 1 293 -17 593 289 72 43 chr1 252121183 252121486 -30072178 + L1ME3A LINE L1 4995 5325 -804 332 245 63 35 chr1 252121511 252121654 -30072010 + L1ME3A LINE L1 5443 5589 -556 423 0 0 0 chr1 252121987 252122034 -30071630 + (CA)n Simple_repeat Simple_repeat 2 48 0 334 256 114 62 chr1 252122043 252122219 -30071445 + L1ME3A LINE L1 5969 6153 0 316 128 0 0 chr1 252122307 252122354 -30071310 + L1ME3A LINE L1 6089 6135 -35 6096 67 2 8 chr1 252123393 252124188 -30069476 + L1PA7 LINE L1 5364 6154 0 28 0 0 0 chr1 252124539 252124567 -30069097 + AT_rich Low_complexity Low_complexity 1 28 0 469 237 40 104 chr1 252125821 252126099 -30067565 + L2 LINE L2 3048 3307 -6 21 36 0 0 chr1 252126269 252126297 -30067367 + AT_rich Low_complexity Low_complexity 1 28 0 522 348 170 30 chr1 252126650 252126708 -30066956 + L3 LINE CR1 1013 1062 -515 180 0 0 0 chr1 252126708 252126728 -30066936 + (TA)n Simple_repeat Simple_repeat 2 21 0 2297 86 7 0 chr1 252126731 252127023 -30066641 - AluSq SINE Alu -19 294 1 522 348 170 30 chr1 252127023 252127354 -30066310 + L3 LINE CR1 1063 1461 -116 231 227 127 82 chr1 252127498 252127608 -30066056 + LTR40a LTR ERVL 16 130 -389 398 20 20 0 chr1 252127951 252128002 -30065662 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 532 356 110 7 chr1 252129416 252129697 -30063967 + L3 LINE CR1 1258 1567 -10 306 239 46 46 chr1 252130218 252130327 -30063337 - MER103 DNA DNA -6 160 52 321 229 10 62 chr1 252130391 252130487 -30063177 - MIR3 SINE MIR -28 180 90 1185 241 103 32 chr1 252131080 252131449 -30062215 + MSTD LTR MaLR 2 396 0 4631 236 63 80 chr1 252131451 252131926 -30061738 + MSTD-int LTR MaLR 2 484 -1251 2138 88 7 7 chr1 252131926 252132263 -30061401 - AluSx SINE Alu 0 337 1 4631 236 63 80 chr1 252132263 252133550 -30060114 + MSTD-int LTR MaLR 484 1735 0 1354 211 67 46 chr1 252133550 252133938 -30059726 + MSTD LTR MaLR 1 396 0 748 172 120 52 chr1 252134589 252134781 -30058883 + MER3 DNA MER1_type 5 209 0 2135 118 0 7 chr1 252134997 252135293 -30058371 + AluSx SINE Alu 1 294 -18 245 335 112 26 chr1 252136638 252136790 -30056874 - L3 LINE CR1 -3 1574 1410 816 247 46 27 chr1 252136810 252137114 -30056550 - L1ME3A LINE L1 -4 6166 5853 * 1196 218 62 13 chr1 252137108 252137415 -30056249 + L1ME3A LINE L1 5541 5862 -308 291 130 19 19 chr1 252138410 252138464 -30055200 + HSMAR2 DNA Mariner 2 55 -1247 182 37 37 0 chr1 252138505 252138532 -30055132 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 5661 151 53 3 chr1 252138535 252139485 -30054179 + HSMAR2 DNA Mariner 41 1037 -265 359 205 26 13 chr1 252139491 252139569 -30054095 - L2 LINE L2 -13 3300 3222 1081 280 73 79 chr1 252139685 252140164 -30053500 - MER115 DNA AcHobo -84 609 134 337 216 36 0 chr1 252140409 252140548 -30053116 + (TA)n Simple_repeat Simple_repeat 1 144 0 561 198 0 0 chr1 252141719 252141845 -30051819 + CT-rich Low_complexity Low_complexity 2 127 0 252 284 15 15 chr1 252141872 252141939 -30051725 - L2 LINE L2 -9 3304 3238 21 57 0 0 chr1 252145048 252145083 -30048581 + AT_rich Low_complexity Low_complexity 1 35 0 1878 118 29 18 chr1 252145785 252146092 -30047572 + AluSx SINE Alu 1 310 0 9132 167 20 20 chr1 252146303 252148988 -30044676 - L1MA8 LINE L1 -1 6290 3606 517 248 34 20 chr1 252149357 252149506 -30044158 + MLT1J LTR MaLR 293 443 -68 250 357 60 25 chr1 252149713 252149912 -30043752 - L2 LINE L2 -150 3163 2958 671 357 25 15 chr1 252149992 252150387 -30043277 - L2 LINE L2 -456 2858 2460 1014 253 55 72 chr1 252150445 252150849 -30042815 - MLT1J2 LTR MaLR -22 428 32 271 298 94 31 chr1 252151915 252152106 -30041558 - MIR SINE MIR 0 262 60 217 306 49 111 chr1 252152388 252152532 -30041132 + L2 LINE L2 3179 3313 0 325 308 9 28 chr1 252152729 252152836 -30040828 + MIR SINE MIR 109 213 -49 247 239 92 55 chr1 252155703 252155812 -30037852 + MIR3 SINE MIR 90 202 -6 1915 159 0 19 chr1 252155996 252156311 -30037353 - AluJb SINE Alu -3 309 1 1900 143 58 30 chr1 252160018 252160383 -30033281 - THE1C LTR MaLR 0 375 1 9417 146 5 34 chr1 252160383 252162007 -30031657 - THE1C-int LTR MaLR 0 1580 4 1759 161 64 25 chr1 252162010 252162371 -30031293 - THE1C LTR MaLR 0 375 1 806 259 35 5 chr1 252162491 252162688 -30030976 - MER20 DNA MER1_type 0 219 17 248 49 49 0 chr1 252165610 252165651 -30028013 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 2292 68 14 3 chr1 252166890 252167208 -30026456 + AluY SINE Alu 1 311 0 218 244 0 0 chr1 252169267 252169308 -30024356 + L2 LINE L2 1417 1457 -1857 417 287 207 0 chr1 252169345 252169495 -30024169 - MER5A DNA MER1_type -1 188 8 262 296 35 17 chr1 252169523 252169638 -30024026 + MER117 DNA MER1_type 52 168 -29 24 91 0 0 chr1 252170066 252170132 -30023532 + AT_rich Low_complexity Low_complexity 1 66 0 331 330 0 11 chr1 252170239 252170327 -30023337 + MIR3 SINE MIR 14 100 -108 1164 185 0 0 chr1 252170330 252170541 -30023123 - Tigger5 DNA MER2_type 0 2323 2113 1434 246 10 0 chr1 252170550 252170851 -30022813 - Tigger5 DNA MER2_type -2019 304 1 261 0 0 0 chr1 252170854 252170883 -30022781 + (TG)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr1 252171003 252171028 -30022636 + AT_rich Low_complexity Low_complexity 1 25 0 342 0 0 0 chr1 252171187 252171225 -30022439 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 0 0 0 chr1 252171605 252171636 -30022028 + AT_rich Low_complexity Low_complexity 1 31 0 507 135 11 0 chr1 252171637 252171726 -30021938 - L1MB1 LINE L1 -7 6161 6072 812 139 0 0 chr1 252173919 252174034 -30019630 + AluSq/x SINE Alu 3 117 -196 1377 124 5 0 chr1 252174034 252174227 -30019437 + AluSg/x SINE Alu 82 275 -35 197 65 32 0 chr1 252174234 252174265 -30019399 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1324 86 0 0 chr1 252174434 252174609 -30019055 - AluY SINE Alu -1 310 136 204 307 40 0 chr1 252176673 252176748 -30016916 - L2 LINE L2 -270 3002 2925 1935 150 7 3 chr1 252176749 252177049 -30016615 + AluSx SINE Alu 1 301 -11 264 371 91 7 chr1 252177812 252177955 -30015709 - MIR SINE MIR -88 174 20 530 198 0 0 chr1 252180172 252180273 -30013391 - L1P LINE L1 -4308 1838 1738 4914 107 18 8 chr1 252180273 252180990 -30012674 + L1PA10 LINE L1 5435 6158 -10 346 181 14 0 chr1 252181501 252181573 -30012091 - LTR50 LTR ERVL -111 684 612 794 265 175 6 chr1 252181590 252181915 -30011749 - LTR50 LTR ERVL -333 462 83 317 315 0 0 chr1 252182129 252182218 -30011446 + L1MC4 LINE L1 6615 6703 -1339 369 0 0 0 chr1 252182224 252182265 -30011399 + (GA)n Simple_repeat Simple_repeat 2 42 0 1937 136 0 7 chr1 252182265 252182537 -30011127 - AluSx SINE Alu -40 272 3 216 0 0 0 chr1 252184017 252184041 -30009623 + (T)n Simple_repeat Simple_repeat 1 24 0 497 333 7 0 chr1 252184804 252184942 -30008722 - L2 LINE L2 0 3272 3134 29 0 0 0 chr1 252185011 252185040 -30008624 + AT_rich Low_complexity Low_complexity 1 29 0 213 121 0 0 chr1 252186725 252186758 -30006906 + (CA)n Simple_repeat Simple_repeat 1 33 0 2304 100 3 0 chr1 252187566 252187865 -30005799 + AluSx SINE Alu 1 300 -12 468 279 38 0 chr1 252188024 252188223 -30005441 + MLT1J LTR MaLR 1 172 -278 1471 150 170 12 chr1 252188593 252188934 -30004730 - MSTA LTR MaLR -2 426 32 193 250 29 44 chr1 252189326 252189394 -30004270 + L2 LINE L2 2977 3043 -229 1014 192 45 71 chr1 252191231 252191539 -30002125 + MLT2C1 LTR ERVL 1 300 -97 346 195 183 0 chr1 252191539 252191621 -30002043 + L2 LINE L2 3217 3313 0 499 91 26 0 chr1 252192045 252192122 -30001542 - MADE1 DNA Mariner -1 79 1 187 404 10 20 chr1 252192143 252192242 -30001422 + L2 LINE L2 3175 3272 0 564 301 92 0 chr1 252192522 252192718 -30000946 + L2 LINE L2 3100 3313 0 722 110 31 8 chr1 252193038 252193165 -30000499 + L1MB3 LINE L1 6053 6182 -1 25 31 0 0 chr1 252193165 252193197 -30000467 + AT_rich Low_complexity Low_complexity 1 32 0 702 0 0 0 chr1 252194533 252194611 -29999053 + (CTTTG)n Simple_repeat Simple_repeat 5 82 0 284 250 29 86 chr1 252194620 252194760 -29998904 + LTR33A LTR ERVL 66 197 -326 534 269 59 0 chr1 252194790 252194976 -29998688 + LTR33A LTR ERVL 323 519 -4 3975 263 140 31 chr1 252196067 252198223 -29995441 + HAL1 LINE L1 112 2502 -5 212 305 12 37 chr1 252198347 252198429 -29995235 + L2 LINE L2 3231 3310 -3 1665 356 60 14 chr1 252198441 252199289 -29994375 - L3 LINE CR1 -248 1329 443 2009 62 4 12 chr1 252199507 252199763 -29993901 - AluY SINE Alu -57 254 1 302 329 39 120 chr1 252203074 252203722 -29989942 + L2 LINE L2 2379 2973 -341 229 385 36 0 chr1 252203979 252204145 -29989519 - MIR SINE MIR -34 228 57 947 322 71 56 chr1 252204589 252205352 -29988312 + L2 LINE L2 2318 3090 -223 218 221 195 26 chr1 252205547 252205624 -29988040 + L2 LINE L2 3224 3313 0 337 215 25 0 chr1 252205779 252205858 -29987806 + MLT1H1 LTR MaLR 3 83 -472 1625 251 139 17 chr1 252205869 252206386 -29987278 + MLT1E LTR MaLR 10 589 -4 372 71 0 0 chr1 252206500 252206556 -29987108 + (TC)n Simple_repeat Simple_repeat 1 56 0 256 294 106 0 chr1 252206578 252206663 -29987001 + MLT1H1 LTR MaLR 210 303 -252 522 340 117 3 chr1 252206785 252207067 -29986597 - L1ME LINE L1 -542 5628 5315 258 288 61 40 chr1 252207277 252207555 -29986109 - L1ME LINE L1 -1089 5057 4774 284 274 12 0 chr1 252208539 252208623 -29985041 - L2 LINE L2 -952 2362 2278 1493 193 22 41 chr1 252208633 252208996 -29984668 + MLT1A1 LTR MaLR 10 365 0 204 311 110 46 chr1 252208998 252209300 -29984364 - L2 LINE L2 -1054 2260 1875 2437 70 3 6 chr1 252209959 252210271 -29983393 + AluY SINE Alu 1 311 0 23 54 0 0 chr1 252210461 252210498 -29983166 + AT_rich Low_complexity Low_complexity 1 37 0 331 292 262 0 chr1 252211600 252211802 -29981862 - MIR SINE MIR -2 260 6 281 307 163 7 chr1 252211757 252211910 -29981754 + MIR SINE MIR 38 214 -48 * 870 241 157 15 chr1 252212167 252212491 -29981173 - LTR50 LTR ERVL -425 370 1 729 315 88 39 chr1 252213434 252213796 -29979868 + L2 LINE L2 2891 3270 -43 40 37 0 0 chr1 252213980 252214034 -29979630 + AT_rich Low_complexity Low_complexity 1 54 0 652 298 138 45 chr1 252214074 252214500 -29979164 - MLT1K LTR MaLR 0 588 123 623 237 47 18 chr1 252215109 252215278 -29978386 - MIR SINE MIR -31 231 58 5337 106 23 11 chr1 252215294 252216136 -29977528 - L1MA1 LINE L1 0 6302 5451 2101 63 4 0 chr1 252216406 252216659 -29977005 + AluY SINE Alu 1 254 -57 207 163 194 122 chr1 252217016 252217114 -29976550 + L2 LINE L2 3168 3272 0 1052 306 135 9 chr1 252217219 252217657 -29976007 - LTR67 LTR ERVL -8 549 57 25 0 0 0 chr1 252218027 252218052 -29975612 + AT_rich Low_complexity Low_complexity 1 25 0 2309 98 0 9 chr1 252218812 252219128 -29974536 + AluSq SINE Alu 1 313 0 195 327 93 9 chr1 252219273 252219380 -29974284 + L2 LINE L2 2659 2774 -540 1965 102 62 81 chr1 252219477 252219848 -29973816 - THE1B LTR MaLR 0 364 1 189 345 134 7 chr1 252219967 252220109 -29973555 - MIR SINE MIR -1 261 102 893 253 26 9 chr1 252220907 252221136 -29972528 - MIR SINE MIR 0 262 30 180 446 22 0 chr1 252222171 252222263 -29971401 - L2 LINE L2 -10 3262 3169 2035 139 0 7 chr1 252222471 252222766 -29970898 + AluSg SINE Alu 3 295 -15 342 307 41 26 chr1 252222941 252223141 -29970523 + MIR3 SINE MIR 13 212 -50 371 193 0 19 chr1 252223241 252223361 -29970303 - MLT1F1 LTR MaLR 0 542 402 705 324 43 25 chr1 252224198 252224596 -29969068 - LTR16A LTR ERVL -12 438 34 1363 177 58 42 chr1 252224755 252225134 -29968530 - Charlie1b DNA MER1_type 0 523 139 332 286 168 35 chr1 252225244 252225447 -29968217 - L2 LINE L2 -688 2626 2397 975 290 70 8 chr1 252225505 252225860 -29967804 - LTR16A1 LTR ERVL 0 457 81 1521 190 49 52 chr1 252225860 252226229 -29967435 - MER39 LTR ERV1 0 707 340 317 226 117 45 chr1 252226216 252226343 -29967321 - MER39 LTR ERV1 -572 135 1 * 9891 148 27 12 chr1 252227287 252228910 -29964754 - Tigger1 DNA MER2_type -740 1678 28 1356 37 0 0 chr1 252228910 252229074 -29964590 + L1PA4 LINE L1 5989 6152 -3 9891 148 27 12 chr1 252229074 252229102 -29964562 - Tigger1 DNA MER2_type -2390 28 2 469 263 31 51 chr1 252230338 252230593 -29963071 - MER112 DNA MER1_type -2 254 5 229 153 17 17 chr1 252230849 252230908 -29962756 + CT-rich Low_complexity Low_complexity 3 61 0 371 357 34 15 chr1 252231049 252231315 -29962349 + L2 LINE L2 2575 2845 -469 2401 109 19 25 chr1 252231574 252231940 -29961724 + THE1B LTR MaLR 1 364 0 251 337 34 0 chr1 252232646 252232743 -29960921 - MIR SINE MIR -24 184 79 267 103 0 0 chr1 252233329 252233368 -29960296 + (A)n Simple_repeat Simple_repeat 1 39 0 202 227 0 0 chr1 252235592 252235636 -29958028 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 250 172 65 75 chr1 252236533 252236626 -29957038 + L1MC4 LINE L1 6614 6705 -1337 283 147 75 22 chr1 252236702 252237019 -29956645 + (TA)n Simple_repeat Simple_repeat 1 333 0 207 171 0 0 chr1 252237074 252237109 -29956555 + (CA)n Simple_repeat Simple_repeat 1 35 0 424 302 82 56 chr1 252237166 252237471 -29956193 - LTR16C LTR ERVL -178 313 1 639 272 105 17 chr1 252237562 252237801 -29955863 + L3 LINE CR1 688 947 -630 559 294 116 38 chr1 252237893 252238185 -29955479 + L3 LINE CR1 1262 1576 -1 180 152 0 0 chr1 252239468 252239501 -29954163 + (CA)n Simple_repeat Simple_repeat 2 34 0 732 156 57 0 chr1 252239619 252239741 -29953923 + AluJb SINE Alu 5 133 -179 321 26 0 0 chr1 252239791 252239829 -29953835 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1698 178 25 0 chr1 252239832 252240107 -29953557 - AluJb SINE Alu -29 283 2 1058 197 129 57 chr1 252241095 252241680 -29951984 - L1ME LINE L1 -487 5957 5341 207 0 0 0 chr1 252241682 252241705 -29951959 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 76 76 0 chr1 252241707 252241773 -29951891 + (TA)n Simple_repeat Simple_repeat 1 71 0 1803 199 101 21 chr1 252241776 252242212 -29951452 - MLT2B1 LTR ERVL -40 480 10 456 156 10 10 chr1 252242439 252242535 -29951129 - L1ME LINE L1 -1436 4990 4895 1228 211 59 61 chr1 252242542 252242998 -29950666 - L1ME LINE L1 -1700 4726 4272 * 10410 107 58 19 chr1 252242995 252245207 -29948457 - L1PBa LINE L1 -3774 3088 634 1188 159 0 5 chr1 252245207 252245408 -29948256 - L1PBa LINE L1 -6663 200 1 334 270 81 21 chr1 252245392 252245609 -29948055 - L1ME LINE L1 -4595 2012 1619 * 229 232 36 18 chr1 252245609 252245721 -29947943 + (TTATA)n Simple_repeat Simple_repeat 1 114 0 245 238 38 29 chr1 252245732 252245837 -29947827 - L1ME LINE L1 -4869 1557 1452 432 324 104 17 chr1 252245942 252246229 -29947435 - L1ME LINE L1 -6023 584 273 427 233 37 55 chr1 252246288 252246451 -29947213 + L1MC4 LINE L1 6637 6796 -1246 520 318 55 20 chr1 252246513 252246859 -29946805 + L1M4 LINE L1 4331 4688 -1458 2284 143 5 24 chr1 252247039 252247410 -29946254 + THE1B LTR MaLR 1 364 0 10803 97 39 1 chr1 252247410 252248932 -29944732 + THE1B-int LTR MaLR 1 1580 0 2093 142 25 30 chr1 252248932 252249298 -29944366 + THE1B LTR MaLR 1 364 0 1269 282 111 51 chr1 252251305 252252017 -29941647 + L2 LINE L2 2220 2974 -340 275 243 19 19 chr1 252252573 252252676 -29940988 + (TATG)n Simple_repeat Simple_repeat 2 104 0 350 140 0 0 chr1 252254578 252254635 -29939029 - MLT2C2 LTR ERVL 0 520 464 236 162 0 15 chr1 252254664 252254732 -29938932 + GA-rich Low_complexity Low_complexity 2 68 0 1496 166 41 7 chr1 252254733 252255061 -29938603 - MLT2C2 LTR ERVL -60 337 1 609 351 16 11 chr1 252255292 252255477 -29938187 + MER91A DNA MER1_type 1 186 -10 207 311 0 0 chr1 252255514 252255559 -29938105 + MER91A DNA MER1_type 133 177 -13 216 0 0 0 chr1 252256017 252256041 -29937623 + (T)n Simple_repeat Simple_repeat 1 24 0 395 329 68 18 chr1 252256837 252257059 -29936605 - MIR SINE MIR -12 250 18 236 290 191 22 chr1 252257134 252257317 -29936347 + MIR SINE MIR 17 230 -32 1426 238 51 70 chr1 252258290 252258761 -29934903 - MLT1C LTR MaLR 0 467 6 720 214 91 85 chr1 252259031 252259349 -29934315 + MER46C DNA MER2_type 5 324 -14 722 218 79 0 chr1 252259432 252259597 -29934067 + MER5B DNA MER1_type 1 178 0 1572 224 31 80 chr1 252259754 252259912 -29933752 + MLT1C LTR MaLR 1 165 -302 2304 89 0 10 chr1 252259912 252260216 -29933448 - AluSp SINE Alu -12 301 1 1572 224 31 80 chr1 252260216 252260535 -29933129 + MLT1C LTR MaLR 165 455 -12 654 306 60 4 chr1 252260685 252260917 -29932747 - MIR SINE MIR 0 262 18 186 43 0 0 chr1 252261389 252261412 -29932252 + (TC)n Simple_repeat Simple_repeat 2 24 0 333 300 143 38 chr1 252261608 252261818 -29931846 - MIR SINE MIR -3 259 28 23 0 0 0 chr1 252262560 252262583 -29931081 + AT_rich Low_complexity Low_complexity 1 23 0 399 275 34 54 chr1 252262662 252262811 -29930853 + MLT1J2 LTR MaLR 15 160 -290 355 235 77 104 chr1 252263186 252263369 -29930295 - L1ME LINE L1 -2954 3126 2949 1718 260 92 52 chr1 252263369 252263651 -29930013 - L1ME LINE L1 -3435 2645 2376 2192 113 0 0 chr1 252263651 252263943 -29929721 - AluY SINE Alu -19 292 1 1718 260 92 52 chr1 252263943 252265803 -29927861 - L1ME LINE L1 -3704 2376 431 599 280 37 16 chr1 252265856 252266045 -29927619 - L1ME LINE L1 -5846 224 32 371 195 119 40 chr1 252266049 252266157 -29927507 + MLT1I LTR MaLR 316 407 -2 2244 85 21 3 chr1 252267747 252268077 -29925587 - L1PA13 LINE L1 0 6163 5828 790 297 51 56 chr1 252268103 252268493 -29925171 + L2 LINE L2 2926 3313 0 180 259 0 35 chr1 252270425 252270483 -29923181 + L2 LINE L2 3208 3263 -50 1406 191 3 85 chr1 252270673 252271002 -29922662 + AluJb SINE Alu 1 302 -10 452 326 67 10 chr1 252274189 252274382 -29919282 + MIR SINE MIR 9 212 -50 915 234 156 47 chr1 252274982 252275366 -29918298 - MLT1H LTR MaLR -1 548 123 244 343 59 20 chr1 252275508 252275610 -29918054 - L2 LINE L2 -42 3271 3166 186 43 0 0 chr1 252277008 252277031 -29916633 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 436 302 93 17 chr1 252277187 252277359 -29916305 + MIR SINE MIR 46 230 -32 1048 200 13 40 chr1 252277585 252277810 -29915854 + MER58A DNA MER1_type 6 224 0 265 303 33 74 chr1 252279208 252279411 -29914253 - MIR SINE MIR -36 226 30 2010 160 21 24 chr1 252279527 252279903 -29913761 + THE1C LTR MaLR 1 375 0 8902 135 84 6 chr1 252279905 252281368 -29912296 + THE1C-int LTR MaLR 3 1580 0 2062 148 19 24 chr1 252281368 252281745 -29911919 + THE1C LTR MaLR 1 375 0 392 290 136 18 chr1 252283115 252283284 -29910380 + MER91A DNA MER1_type 5 193 -3 392 324 133 23 chr1 252284078 252284387 -29909277 + L1ME4a LINE L1 5024 5366 -780 239 271 65 47 chr1 252284419 252284526 -29909138 + L1ME4a LINE L1 5431 5539 -582 242 297 50 0 chr1 252284540 252284641 -29909023 - L2 LINE L2 -58 3255 3150 233 268 82 21 chr1 252285364 252285461 -29908203 + L1ME4a LINE L1 5984 6086 -35 374 262 81 67 chr1 252285987 252286422 -29907242 - L1ME4a LINE L1 -2 6119 5679 2226 101 3 0 chr1 252286535 252286821 -29906843 - AluSp SINE Alu -15 298 12 2413 142 41 12 chr1 252287499 252287915 -29905749 + MSTA LTR MaLR 1 428 0 1570 48 0 5 chr1 252288013 252288200 -29905464 - AluY SINE Alu -16 295 110 245 323 82 45 chr1 252288338 252288558 -29905106 + MIR SINE MIR 2 229 -33 736 302 111 43 chr1 252288561 252289043 -29904621 + L2 LINE L2 2796 3304 -9 500 273 107 58 chr1 252289495 252289803 -29903861 - MLT1J1 LTR MaLR -123 323 1 25 0 0 0 chr1 252289824 252289849 -29903815 + AT_rich Low_complexity Low_complexity 1 25 0 5890 182 88 67 chr1 252290161 252291723 -29901941 - MER52A LTR ERV1 0 1755 1 351 359 47 27 chr1 252292007 252292263 -29901401 - HAL1 LINE L1 -1130 1377 1117 243 353 23 73 chr1 252292377 252292638 -29901026 - L2 LINE L2 -195 3077 2830 249 289 50 72 chr1 252293052 252293232 -29900432 - L2 LINE L2 -1319 1995 1820 30 89 0 0 chr1 252294464 252294543 -29899121 + AT_rich Low_complexity Low_complexity 1 79 0 3982 127 36 0 chr1 252294544 252295183 -29898481 - L1PA15 LINE L1 -243 6573 5912 238 182 0 0 chr1 252295192 252295247 -29898417 - L1PA15 LINE L1 -857 5960 5906 2541 244 9 13 chr1 252295253 252295929 -29897735 - L1PA15 LINE L1 -3027 3770 3098 216 0 0 0 chr1 252295929 252295953 -29897711 + (TA)n Simple_repeat Simple_repeat 2 25 0 483 15 22 88 chr1 252295991 252296128 -29897536 + (TA)n Simple_repeat Simple_repeat 2 129 0 6167 219 12 26 chr1 252296281 252298348 -29895316 - L1PA15 LINE L1 -3688 3109 1059 247 250 16 16 chr1 252298350 252298414 -29895250 - L2 LINE L2 -41 3272 3209 391 155 77 65 chr1 252298465 252298620 -29895044 - L1ME LINE L1 -429 5692 5536 23 92 0 0 chr1 252299382 252299447 -29894217 + AT_rich Low_complexity Low_complexity 1 65 0 2331 69 7 3 chr1 252299565 252299855 -29893809 - AluSp SINE Alu -18 295 5 678 298 101 9 chr1 252299931 252300149 -29893515 + MIR SINE MIR 20 257 -5 388 287 102 19 chr1 252300152 252300466 -29893198 - L1ME4a LINE L1 -219 5971 5632 198 0 0 0 chr1 252300512 252300534 -29893130 + (T)n Simple_repeat Simple_repeat 1 22 0 2171 68 4 0 chr1 252300648 252300914 -29892750 - AluY SINE Alu -44 267 1 328 256 70 64 chr1 252300949 252301121 -29892543 - L1ME4a LINE L1 -2323 5554 5382 198 388 41 0 chr1 252302339 252302460 -29891204 - L3 LINE CR1 -19 1558 1433 25 75 0 0 chr1 252303646 252303699 -29889965 + AT_rich Low_complexity Low_complexity 1 53 0 479 220 93 8 chr1 252304084 252304202 -29889462 + FLAM_C SINE Alu 3 130 -3 188 220 17 34 chr1 252304570 252304629 -29889035 - L2 LINE L2 0 3313 3256 1645 271 59 72 chr1 252304680 252305414 -29888250 + MER21B LTR ERV1 15 738 -125 586 304 28 18 chr1 252305467 252305753 -29887911 + L1 LINE L1 3670 3958 -2188 227 171 143 0 chr1 252305888 252305958 -29887706 + L1MA4 LINE L1 6221 6300 0 237 330 0 0 chr1 252306039 252306145 -29887519 - L1ME4a LINE L1 -1554 4661 4556 549 271 50 9 chr1 252306196 252306414 -29887250 + L1 LINE L1 4019 4245 -1901 1354 126 5 0 chr1 252306539 252306730 -29886934 - AluSp SINE Alu -40 273 82 791 180 53 0 chr1 252306836 252307025 -29886639 - L1MA4 LINE L1 -2 6298 6100 29 0 0 0 chr1 252307327 252307356 -29886308 + AT_rich Low_complexity Low_complexity 1 29 0 3417 202 44 12 chr1 252307895 252308059 -29885605 - L1MC3 LINE L1 -1005 6780 6623 2363 88 0 0 chr1 252308059 252308353 -29885311 - AluSc SINE Alu -15 294 1 3417 202 44 12 chr1 252308353 252308935 -29884729 - L1MC3 LINE L1 -1162 6623 6010 721 251 60 26 chr1 252308941 252309208 -29884456 - L1MCa LINE L1 -5077 1487 1212 516 160 0 30 chr1 252309233 252309333 -29884331 - FLAM_A SINE Alu -4 138 42 844 266 42 0 chr1 252309351 252309659 -29884005 - L1MCa LINE L1 -4848 1197 877 1250 260 110 10 chr1 252309660 252310267 -29883397 - L1ME4a LINE L1 -3018 3197 2530 2514 168 9 5 chr1 252310275 252310698 -29882966 - Tigger2a DNA MER2_type 0 434 10 878 236 85 100 chr1 252310713 252311671 -29881993 - L1MEc LINE L1 -3717 2498 1581 3043 169 47 11 chr1 252311851 252312025 -29881639 - L1MA5A LINE L1 -1 6296 6130 288 77 0 0 chr1 252312025 252312064 -29881600 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 3043 169 47 11 chr1 252312064 252312512 -29881152 - L1MA5A LINE L1 -167 6130 5652 2677 164 7 12 chr1 252312524 252313190 -29880474 - L1MA5A LINE L1 -743 5403 4826 1554 126 33 0 chr1 252313199 252313470 -29880194 + L1MA5A LINE L1 4518 4797 -1349 332 267 95 28 chr1 252313472 252313666 -29879998 - L1MEc LINE L1 -4981 1254 1075 2117 137 36 38 chr1 252313666 252314031 -29879633 - THE1B LTR MaLR 0 364 1 332 267 95 28 chr1 252314031 252314275 -29879389 - L1MEc LINE L1 -5160 1075 794 223 85 43 0 chr1 252314520 252314567 -29879097 + T-rich Low_complexity Low_complexity 2 50 0 207 0 0 0 chr1 252314689 252314712 -29878952 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 396 248 35 35 chr1 252314838 252314888 -29878776 - L1MEc LINE L1 -5878 327 278 2202 122 0 0 chr1 252314888 252315191 -29878473 - AluSp SINE Alu -10 303 1 396 248 35 35 chr1 252315191 252315281 -29878383 - L1MEc LINE L1 -5926 279 187 210 271 68 0 chr1 252315320 252315379 -29878285 + L2 LINE L2 3210 3272 0 24 0 0 0 chr1 252315858 252315882 -29877782 + AT_rich Low_complexity Low_complexity 1 24 0 2442 244 23 3 chr1 252316416 252317141 -29876523 + L1M4 LINE L1 2461 3200 -2946 2689 177 54 18 chr1 252317173 252318421 -29875243 - L1MCa LINE L1 -4913 1513 119 255 103 0 0 chr1 252319829 252319868 -29873796 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 299 21 52 chr1 252320068 252320165 -29873499 - MIR SINE MIR -166 96 3 288 53 0 0 chr1 252320665 252320703 -29872961 + (CA)n Simple_repeat Simple_repeat 2 39 0 364 337 64 25 chr1 252322687 252322889 -29870775 - L2 LINE L2 -205 3108 2899 21 0 0 0 chr1 252322893 252322914 -29870750 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 252323367 252323388 -29870276 + AT_rich Low_complexity Low_complexity 1 21 0 9587 195 67 48 chr1 252323828 252327053 -29866611 + L1MCa LINE L1 26 3314 -3112 3517 264 66 14 chr1 252327113 252327942 -29865722 + L1MB7 LINE L1 189 1092 -5450 180 0 0 0 chr1 252327942 252327962 -29865702 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3517 264 66 14 chr1 252327962 252328244 -29865420 + L1MB7 LINE L1 1092 1358 -5184 20998 166 17 8 chr1 252328250 252331857 -29861807 + L1MA3 LINE L1 17 3656 -3909 6260 125 13 24 chr1 252331857 252332750 -29860914 + L1MA3 LINE L1 6673 7554 -170 1936 141 0 3 chr1 252332750 252333049 -29860615 + AluSx SINE Alu 1 298 -14 6260 125 13 24 chr1 252333049 252333219 -29860445 + L1MA3 LINE L1 7554 7724 0 3647 243 84 51 chr1 252333220 252333709 -29859955 + L1MB7 LINE L1 1323 1794 -4850 1927 159 0 0 chr1 252333709 252334005 -29859659 - AluSx SINE Alu -16 296 1 3647 243 84 51 chr1 252334005 252334300 -29859364 + L1MB7 LINE L1 1794 2078 -4566 2109 222 32 48 chr1 252334300 252334863 -29858801 - MLT2B3 LTR ERVL 0 554 1 3647 243 84 51 chr1 252334863 252335117 -29858547 + L1MB7 LINE L1 2078 2322 -4322 2184 173 16 0 chr1 252335117 252335499 -29858165 - MLT1B LTR MaLR -2 388 1 3647 243 84 51 chr1 252335499 252336977 -29856687 + L1MB7 LINE L1 2322 3918 -2726 * 4890 216 57 25 chr1 252336951 252338933 -29854731 + L1MB7 LINE L1 4248 6323 -359 6492 146 61 7 chr1 252338933 252339770 -29853894 + Tigger3b DNA MER2_type 1 920 -2108 209 33 33 0 chr1 252339770 252339800 -29853864 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6492 146 61 7 chr1 252339800 252340130 -29853534 + Tigger3b DNA MER2_type 920 1231 0 4890 216 57 25 chr1 252340130 252340475 -29853189 + L1MB7 LINE L1 6323 6655 -27 363 235 38 68 chr1 252340494 252340626 -29853038 + HAL1 LINE L1 947 1074 -1433 1189 260 92 34 chr1 252340644 252341210 -29852454 + HAL1 LINE L1 1630 2228 -279 259 265 122 20 chr1 252341291 252341389 -29852275 + MLT1I LTR MaLR 75 182 -227 920 201 6 0 chr1 252341731 252341895 -29851769 + AluJo SINE Alu 1 165 -147 237 279 44 70 chr1 252341920 252342078 -29851586 + HAL1 LINE L1 2347 2500 -7 2018 119 0 24 chr1 252343216 252343511 -29850153 + AluSx SINE Alu 1 288 -24 525 327 122 27 chr1 252345128 252345498 -29848166 - L2 LINE L2 -1 3312 2908 1329 158 37 20 chr1 252345580 252346013 -29847651 + LTR54 LTR ERV1 1 506 -4 829 307 83 0 chr1 252346030 252346320 -29847344 + MER57-int LTR ERV1 1927 2240 -4091 1695 156 48 43 chr1 252346359 252346732 -29846932 + THE1C LTR MaLR 1 375 0 261 188 0 43 chr1 252346812 252346881 -29846783 + MER57-int LTR ERV1 437 502 -7035 1266 220 18 115 chr1 252346881 252347484 -29846180 + MER57-int LTR ERV1 467 2558 -3773 772 238 16 0 chr1 252347580 252347765 -29845899 + MER57-int LTR ERV1 842 1029 -4094 504 229 94 49 chr1 252347854 252348151 -29845513 - MER34 LTR ERV1 -290 354 1 2698 207 21 13 chr1 252348226 252348748 -29844916 + Tigger7 DNA MER2_type 1 526 -1961 573 191 0 0 chr1 252348743 252348832 -29844832 + Tigger7 DNA MER2_type 2401 2489 -2 * 1988 157 72 169 chr1 252348832 252349637 -29844027 + LTR8A LTR ERV1 1 727 0 3646 258 70 52 chr1 252349677 252352474 -29841190 + MER57-int LTR ERV1 1716 4110 -761 321 373 6 13 chr1 252352409 252352567 -29841097 + MER70-int LTR ERVL 3642 3798 -1225 * 1790 250 88 3 chr1 252352637 252353120 -29840544 + MER57-int LTR ERV1 4182 7113 -424 1294 138 53 20 chr1 252353120 252353492 -29840172 + LTR54 LTR ERV1 50 501 -9 301 261 169 23 chr1 252353532 252353662 -29840002 + L2 LINE L2 2230 2378 -936 1483 164 19 45 chr1 252353686 252353870 -29839794 - AluJb SINE Alu -18 294 118 2103 148 117 13 chr1 252353870 252354256 -29839408 - MSTA LTR MaLR 0 428 3 1483 164 19 45 chr1 252354256 252354340 -29839324 - AluJb SINE Alu -194 118 33 221 270 16 0 chr1 252354433 252354496 -29839168 - L2 LINE L2 -5 3308 3245 630 264 17 28 chr1 252354685 252354863 -29838801 - MIR SINE MIR -25 237 62 1549 91 0 10 chr1 252354893 252355101 -29838563 - AluSc SINE Alu -103 206 1 570 291 26 55 chr1 252355610 252355954 -29837710 + L2 LINE L2 2297 2630 -684 725 213 6 0 chr1 252357576 252357750 -29835914 + GA-rich Low_complexity Low_complexity 4 178 0 343 233 8 25 chr1 252357765 252357885 -29835779 + G-rich Low_complexity Low_complexity 5 122 0 791 240 19 24 chr1 252358343 252358551 -29835113 + MIR SINE MIR 31 237 -25 403 268 109 14 chr1 252358731 252359024 -29834640 + MLT1J2 LTR MaLR 67 399 -10 1557 230 14 14 chr1 252360970 252361318 -29832346 + MLT2D LTR ERVL 2 349 -65 239 198 136 12 chr1 252361377 252361442 -29832222 + L1MC4 LINE L1 6613 6691 -1351 548 114 0 0 chr1 252361442 252361521 -29832143 + MADE1 DNA Mariner 2 80 0 239 198 136 12 chr1 252361521 252361536 -29832128 + L1MC4 LINE L1 6691 6703 -1339 245 182 18 0 chr1 252361537 252361592 -29832072 + (TA)n Simple_repeat Simple_repeat 1 56 0 311 96 39 0 chr1 252361689 252361741 -29831923 + MLT2B1 LTR ERVL 467 520 0 1583 87 0 10 chr1 252361903 252362111 -29831553 - AluSg/x SINE Alu -1 311 106 199 395 13 0 chr1 252362712 252362788 -29830876 - L2 LINE L2 0 3313 3237 734 250 175 4 chr1 252363522 252363762 -29829902 + MLT2B2 LTR ERVL 161 441 -74 181 163 38 25 chr1 252363762 252363842 -29829822 + (TA)n Simple_repeat Simple_repeat 1 81 0 322 148 0 0 chr1 252363844 252363898 -29829766 + MLT2B2 LTR ERVL 467 520 0 413 237 0 18 chr1 252363899 252364013 -29829651 + ERVL-B2 LTR ERVL 2 113 -5651 924 221 171 0 chr1 252364013 252364335 -29829329 + L1MB1 LINE L1 869 1245 -4646 7219 211 20 27 chr1 252364340 252366892 -29826772 + L1MB1 LINE L1 3368 5905 -87 520 257 14 37 chr1 252366921 252367045 -29826619 + L1M3d LINE L1 2572 2690 -3280 2144 97 7 23 chr1 252367045 252367355 -29826309 - AluSp SINE Alu -8 305 1 520 257 14 37 chr1 252367355 252367444 -29826220 + L1M3d LINE L1 2690 2780 -3190 265 259 92 40 chr1 252367448 252367622 -29826042 - LTR41 LTR ERVL -6 767 585 233 167 0 0 chr1 252367929 252367971 -29825693 + AluSg/x SINE Alu 136 177 -126 950 116 7 0 chr1 252367974 252368112 -29825552 + AluSg/x SINE Alu 156 294 -16 361 250 58 35 chr1 252368250 252368422 -29825242 - LTR41 LTR ERVL -597 176 1 3865 224 108 98 chr1 252368422 252369270 -29824394 + L1ME1 LINE L1 2777 3615 -2375 2019 164 66 3 chr1 252369270 252369649 -29824015 + MER57A LTR ERV1 1 403 0 3865 224 108 98 chr1 252369649 252371928 -29821736 + L1ME1 LINE L1 3615 5925 -65 198 103 0 0 chr1 252375503 252375532 -29818132 + (TC)n Simple_repeat Simple_repeat 1 29 0 2056 154 0 0 chr1 252375532 252375838 -29817826 - AluSg SINE Alu -4 306 1 1970 151 45 0 chr1 252376416 252376747 -29816917 - MER7A DNA MER2_type 0 346 3 237 172 52 0 chr1 252376751 252376809 -29816855 - L1 LINE L1 -881 5265 5205 227 120 13 67 chr1 252377012 252377087 -29816577 + (TA)n Simple_repeat Simple_repeat 1 71 0 3889 178 64 12 chr1 252377091 252377674 -29815990 + L1MB7 LINE L1 5266 5817 -367 2081 123 57 23 chr1 252377674 252378025 -29815639 + THE1B LTR MaLR 1 363 -1 12029 88 1 0 chr1 252378026 252379604 -29814060 + THE1B-int LTR MaLR 1 1580 0 2096 135 48 25 chr1 252379605 252379960 -29813704 + THE1B LTR MaLR 2 364 0 3889 178 64 12 chr1 252379960 252380219 -29813445 + L1MB7 LINE L1 5816 6156 -28 3603 140 29 15 chr1 252380228 252380844 -29812820 - L1PB3 LINE L1 -3 6151 5527 388 268 66 60 chr1 252381131 252381314 -29812350 + L2 LINE L2 3092 3275 -38 969 57 0 0 chr1 252381321 252381444 -29812220 + L1PA3 LINE L1 6033 6155 0 254 264 0 0 chr1 252383949 252384002 -29809662 - L3 LINE CR1 -2 1575 1523 188 294 169 15 chr1 252384182 252384318 -29809346 - MIR3 SINE MIR -22 186 30 22 0 0 0 chr1 252384849 252384871 -29808793 + AT_rich Low_complexity Low_complexity 1 22 0 2857 72 0 3 chr1 252385024 252385397 -29808267 + L1PA10 LINE L1 5559 5930 -238 365 332 99 50 chr1 252385551 252385753 -29807911 + MER115 DNA AcHobo 142 353 -340 929 226 141 24 chr1 252385874 252386171 -29807493 + MER115 DNA AcHobo 362 693 0 393 326 140 34 chr1 252386174 252386560 -29807104 + L2 LINE L2 2258 2684 -630 241 225 150 25 chr1 252387925 252388005 -29805659 - MIR SINE MIR -50 212 123 9314 190 18 13 chr1 252388354 252390031 -29803633 - L1M1 LINE L1 -5865 1700 16 252 240 0 0 chr1 252390295 252390345 -29803319 + (TG)n Simple_repeat Simple_repeat 1 50 0 832 292 79 58 chr1 252391187 252391779 -29801885 + L2 LINE L2 2680 3288 -25 22 35 0 0 chr1 252391787 252391816 -29801848 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr1 252391890 252391917 -29801747 + AT_rich Low_complexity Low_complexity 1 27 0 352 389 20 0 chr1 252394565 252394714 -29798950 + MIR SINE MIR 20 171 -91 352 247 11 11 chr1 252394792 252394885 -29798779 - LTR67 LTR ERVL -7 550 458 330 221 45 80 chr1 252395218 252395417 -29798247 + L1ME3A LINE L1 2725 2916 -3230 * 14294 187 60 17 chr1 252395409 252401718 -29791946 + L1MA4 LINE L1 11 7719 0 397 254 96 28 chr1 252401758 252401935 -29791729 + L1ME3A LINE L1 2896 3084 -3062 790 295 96 22 chr1 252401951 252402951 -29790713 + L1ME3A LINE L1 3147 4220 -1926 2390 130 11 3 chr1 252402981 252403342 -29790322 + THE1B LTR MaLR 1 364 0 2780 121 19 2 chr1 252403342 252403755 -29789909 + THE1B-int LTR MaLR 1 420 -1160 6141 135 54 8 chr1 252403757 252404735 -29788929 + THE1B-int LTR MaLR 558 1580 0 2271 144 11 3 chr1 252404735 252405096 -29788568 + THE1B LTR MaLR 1 364 0 957 302 123 19 chr1 252405096 252406599 -29787065 + L1ME3A LINE L1 4249 5915 -255 244 310 58 30 chr1 252406309 252406601 -29787063 + L1MA8 LINE L1 5612 5915 -376 * 2280 178 47 7 chr1 252406601 252407044 -29786620 + LOR1b LTR ERV1 1 461 0 244 310 58 30 chr1 252407044 252407080 -29786584 + L1MA8 LINE L1 5915 5949 -342 1495 214 3 0 chr1 252407145 252407439 -29786225 + AluJo SINE Alu 1 295 -17 351 352 8 0 chr1 252407816 252407944 -29785720 - L2 LINE L2 -657 2657 2529 389 149 0 23 chr1 252408308 252408395 -29785269 - L1MA10 LINE L1 0 6334 6250 888 194 9 26 chr1 252408395 252408534 -29785130 - L1M4c LINE L1 -1629 4753 4618 4694 169 41 7 chr1 252408534 252409407 -29784257 + MER4D LTR ERV1 1 903 0 888 194 9 26 chr1 252409407 252409499 -29784165 - L1M4c LINE L1 -1764 4618 4526 246 220 0 0 chr1 252409523 252409582 -29784082 - L1M4c LINE L1 -2766 3616 3558 232 93 19 19 chr1 252409582 252409636 -29784028 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 19710 27 0 0 chr1 252409638 252412757 -29780907 - L1PA3 LINE L1 -1 6154 3036 1814 174 3 22 chr1 252412795 252413112 -29780552 - MER4E LTR ERV1 -92 687 377 785 242 8 38 chr1 252413116 252413454 -29780210 - L1M4c LINE L1 -3826 2556 2225 213 132 0 26 chr1 252413454 252413492 -29780172 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1134 139 0 41 chr1 252413492 252413686 -29779978 - AluSg/x SINE Alu 0 312 127 2304 262 44 66 chr1 252413687 252413780 -29779884 - L1M4c LINE L1 -4167 2217 2124 9181 113 4 1 chr1 252413780 252415063 -29778601 + HSMAR1 DNA Mariner 1 1287 0 2304 262 44 66 chr1 252415063 252415778 -29777886 - L1M4c LINE L1 -4260 2124 1550 191 61 30 0 chr1 252415778 252415811 -29777853 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2304 262 44 66 chr1 252415811 252416570 -29777094 - L1M4c LINE L1 -4834 1550 776 702 332 89 20 chr1 252416590 252416985 -29776679 - L1M4c LINE L1 -5719 594 173 421 331 18 35 chr1 252417016 252417185 -29776479 - MER5B DNA MER1_type 0 178 13 2108 236 77 56 chr1 252417371 252418434 -29775230 + L1ME1 LINE L1 5087 6312 0 9008 180 57 43 chr1 252418451 252421526 -29772138 + L1PA13 LINE L1 1 3200 -3597 1964 24 0 0 chr1 252421521 252421775 -29771889 - L1P LINE L1 -2869 3277 3024 * 7832 18 0 0 chr1 252421775 252423075 -29770589 + L1PA3 LINE L1 4856 6155 0 33 0 0 0 chr1 252423081 252423114 -29770550 + AT_rich Low_complexity Low_complexity 1 33 0 10628 176 28 26 chr1 252423298 252425485 -29768179 + L1PA13 LINE L1 3178 5367 -1430 2040 123 0 3 chr1 252425485 252425777 -29767887 + L1PA13 LINE L1 6500 6806 -8 261 0 0 0 chr1 252425783 252425812 -29767852 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 613 212 173 11 chr1 252426009 252426188 -29767476 - L2 LINE L2 0 3313 3106 330 294 78 54 chr1 252426405 252426609 -29767055 - MIR SINE MIR -5 257 49 229 298 0 0 chr1 252427015 252427072 -29766592 + Charlie8 DNA MER1_type 2360 2416 -1 325 246 82 45 chr1 252427151 252427285 -29766379 - L2 LINE L2 0 3313 3175 828 199 23 28 chr1 252428789 252428965 -29764699 + MER5B DNA MER1_type 4 178 0 293 333 14 85 chr1 252429001 252429142 -29764522 + L2 LINE L2 3126 3256 -16 293 363 0 18 chr1 252429495 252429608 -29764056 - MER5A DNA MER1_type 0 189 79 30 27 0 0 chr1 252429701 252429738 -29763926 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 252429824 252429849 -29763815 + AT_rich Low_complexity Low_complexity 1 25 0 499 245 65 11 chr1 252430049 252430233 -29763431 - LTR67 LTR ERVL -10 547 354 1939 146 13 0 chr1 252432197 252432498 -29761166 - AluSx SINE Alu -7 305 1 323 356 206 16 chr1 252434021 252434389 -29759275 + L2 LINE L2 2835 3272 0 520 257 0 7 chr1 252434743 252434895 -29758769 + L1MC4a LINE L1 3788 3938 -2208 537 206 0 0 chr1 252435103 252435195 -29758469 - Tigger7 DNA MER2_type 0 2491 2400 2330 198 76 16 chr1 252435223 252435709 -29757955 - Tigger7 DNA MER2_type -218 515 1 22 0 0 0 chr1 252435795 252435817 -29757847 + AT_rich Low_complexity Low_complexity 1 22 0 1551 211 0 17 chr1 252435894 252436193 -29757471 + AluJo SINE Alu 1 294 -18 871 205 46 5 chr1 252436295 252436490 -29757174 + MER3 DNA MER1_type 1 203 -6 237 333 0 0 chr1 252436806 252436896 -29756768 + L1MC4 LINE L1 6614 6703 -1339 * 250 224 105 0 chr1 252436824 252436900 -29756764 - L1MC4 LINE L1 -1347 6695 6612 475 275 17 50 chr1 252436914 252437212 -29756452 + L1MC4a LINE L1 4881 5168 -978 1748 253 104 20 chr1 252437313 252437919 -29755745 + L1MC4a LINE L1 5254 5910 -1898 486 243 79 19 chr1 252437911 252438125 -29755539 + L1MC4 LINE L1 7753 7979 -63 * 1948 140 10 0 chr1 252438223 252438516 -29755148 - AluSx SINE Alu -16 296 1 191 412 59 13 chr1 252438658 252438896 -29754768 - L2 LINE L2 -220 3052 2804 23 0 0 0 chr1 252439201 252439224 -29754440 + AT_rich Low_complexity Low_complexity 1 23 0 736 273 113 44 chr1 252439958 252440198 -29753466 - L2 LINE L2 -3 3310 3029 3305 174 46 36 chr1 252440198 252440918 -29752746 - LTR8A LTR ERV1 0 727 1 736 273 113 44 chr1 252440918 252441084 -29752580 - L2 LINE L2 -284 3029 2876 1271 174 197 30 chr1 252441084 252441388 -29752276 - LTR47A LTR ERVL -97 355 1 3187 198 48 31 chr1 252441388 252441761 -29751903 + L1MB3 LINE L1 1384 1749 -4670 2042 111 45 7 chr1 252441761 252442050 -29751614 + AluSc SINE Alu 4 303 -6 3187 198 48 31 chr1 252442050 252445885 -29747779 + L1MB3 LINE L1 1749 5784 -635 2420 194 65 12 chr1 252445885 252446374 -29747290 + MLT2B2 LTR ERVL 1 515 0 3187 198 48 31 chr1 252446374 252447022 -29746642 + L1MB3 LINE L1 5784 6419 0 220 294 0 0 chr1 252447190 252447258 -29746406 + A-rich Low_complexity Low_complexity 1 68 0 265 316 0 6 chr1 252448506 252448658 -29745006 - MIR SINE MIR -21 241 10 199 314 98 29 chr1 252449207 252449309 -29744355 - L2 LINE L2 0 3272 3164 232 218 90 26 chr1 252449654 252449732 -29743932 + MIR SINE MIR 131 213 -49 465 339 51 5 chr1 252451643 252451838 -29741826 - MIR SINE MIR -55 207 4 1581 163 28 53 chr1 252452614 252452934 -29740730 + AluJb SINE Alu 1 312 0 1853 197 8 22 chr1 252453851 252454216 -29739448 - MLT1A1 LTR MaLR 0 365 6 2294 178 47 23 chr1 252454221 252454694 -29738970 - MLT-int LTR MaLR 0 1729 1140 23 54 0 0 chr1 252455443 252455480 -29738184 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 252456850 252456874 -29736790 + AT_rich Low_complexity Low_complexity 1 24 0 373 254 40 57 chr1 252457700 252457877 -29735787 + Charlie7 DNA MER1_type 2423 2596 -16 223 369 85 15 chr1 252457914 252458044 -29735620 + MIR3 SINE MIR 37 175 -33 2062 142 0 0 chr1 252458103 252458412 -29735252 - AluSx SINE Alu 0 312 1 257 360 37 52 chr1 252459037 252459173 -29734491 + L2 LINE L2 3139 3272 0 377 266 188 13 chr1 252459215 252459369 -29734295 + MER5A DNA MER1_type 7 187 -2 632 284 58 43 chr1 252459595 252459852 -29733812 - MIR SINE MIR 0 262 2 229 273 0 0 chr1 252460284 252460328 -29733336 - L2 LINE L2 -14 3258 3215 280 342 69 10 chr1 252461237 252461366 -29732298 + MIR3 SINE MIR 34 169 -39 701 239 7 7 chr1 252461489 252461644 -29732020 - MIR SINE MIR 0 262 108 204 156 22 22 chr1 252462337 252462353 -29731311 + (CTA)n Simple_repeat Simple_repeat 2 17 -29 1504 190 48 78 chr1 252462353 252462827 -29730837 + MLT1C LTR MaLR 5 464 -3 204 156 22 22 chr1 252462827 252462855 -29730809 + (CTA)n Simple_repeat Simple_repeat 16 46 0 21 71 0 0 chr1 252463174 252463216 -29730448 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr1 252463384 252463405 -29730259 + AT_rich Low_complexity Low_complexity 1 21 0 247 311 39 61 chr1 252463903 252464083 -29729581 + L2 LINE L2 2348 2523 -791 559 334 140 28 chr1 252465069 252465755 -29727909 + L2 LINE L2 1754 2516 -798 1931 145 36 7 chr1 252465809 252466112 -29727552 + AluSx SINE Alu 1 312 0 242 148 19 0 chr1 252468379 252468433 -29725231 + (CTCA)n Simple_repeat Simple_repeat 1 55 0 24 32 0 0 chr1 252469098 252469129 -29724535 + AT_rich Low_complexity Low_complexity 1 31 0 2079 98 3 18 chr1 252469527 252469812 -29723852 - AluSq SINE Alu -32 281 1 453 19 0 0 chr1 252472390 252472444 -29721220 + (CA)n Simple_repeat Simple_repeat 2 55 0 434 232 32 32 chr1 252473272 252473457 -29720207 + Charlie7 DNA MER1_type 2426 2610 -2 279 0 0 0 chr1 252473749 252473780 -29719884 + (TG)n Simple_repeat Simple_repeat 2 32 0 199 276 115 46 chr1 252474316 252474403 -29719261 - L2 LINE L2 -33 3280 3188 3117 155 9 0 chr1 252474701 252475225 -29718439 - L1MB2 LINE L1 -1 6170 5642 333 0 0 0 chr1 252477060 252477097 -29716567 + (TG)n Simple_repeat Simple_repeat 2 38 0 1870 136 14 10 chr1 252477272 252477567 -29716097 - AluSx SINE Alu -14 298 3 402 289 96 7 chr1 252478469 252478604 -29715060 + MIR SINE MIR 12 158 -104 3503 173 46 18 chr1 252479391 252480125 -29713539 - L1MB4 LINE L1 -6 6174 5420 211 286 0 14 chr1 252480491 252480561 -29713103 + (CG)n Simple_repeat Simple_repeat 1 69 0 218 274 0 0 chr1 252481207 252481258 -29712406 + CT-rich Low_complexity Low_complexity 1 51 0 327 221 142 79 chr1 252481391 252481518 -29712146 + L2 LINE L2 3136 3270 -2 332 246 77 69 chr1 252481814 252481944 -29711720 - MIR SINE MIR -111 151 21 429 287 163 70 chr1 252483151 252483538 -29710126 + L2 LINE L2 1883 2305 -1009 888 273 210 19 chr1 252483548 252483976 -29709688 - L2 LINE L2 0 3313 2804 470 246 114 29 chr1 252483978 252484153 -29709511 - MER58C DNA MER1_type 0 215 26 1064 249 58 14 chr1 252484518 252484928 -29708736 - L1MB2 LINE L1 -590 5584 5159 1302 245 45 60 chr1 252484947 252485440 -29708224 - L1ME2 LINE L1 -27 6137 5652 2635 266 100 6 chr1 252485588 252486958 -29706706 - L1ME2 LINE L1 -1497 4649 3099 629 262 226 12 chr1 252487063 252487315 -29706349 - MLT1G3 LTR MaLR 0 530 225 195 139 0 0 chr1 252488124 252488160 -29705504 + (CATA)n Simple_repeat Simple_repeat 2 37 0 4398 170 53 21 chr1 252488182 252489314 -29704350 + L1MB2 LINE L1 4948 6126 -45 1708 165 0 14 chr1 252489314 252489611 -29704053 + AluJo SINE Alu 1 293 -19 4398 170 53 21 chr1 252489611 252489658 -29704006 + L1MB2 LINE L1 6126 6170 -1 220 326 87 58 chr1 252489880 252490052 -29703612 + MIR SINE MIR 73 249 -13 21 82 0 0 chr1 252490360 252490409 -29703255 + AT_rich Low_complexity Low_complexity 1 49 0 1532 64 25 0 chr1 252492590 252492792 -29700872 - L1PA10 LINE L1 -15 6153 5947 504 307 42 95 chr1 252493495 252493778 -29699886 + L2 LINE L2 3004 3271 -1 272 345 88 0 chr1 252493819 252493932 -29699732 + MIR3 SINE MIR 47 169 -39 1241 70 16 32 chr1 252493951 252494136 -29699528 - AluYb8 SINE Alu -9 309 128 327 207 16 69 chr1 252494287 252494475 -29699189 + (GGGTG)n Simple_repeat Simple_repeat 1 178 0 1045 313 65 27 chr1 252494667 252495193 -29698471 - L2 LINE L2 -4 3309 2763 660 292 0 6 chr1 252496649 252496817 -29696847 - MER105 DNA DNA -2 202 36 312 275 99 0 chr1 252496919 252497061 -29696603 + L1ME4a LINE L1 4899 5054 -1092 23 0 0 0 chr1 252497122 252497145 -29696519 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 252497179 252497199 -29696465 + (A)n Simple_repeat Simple_repeat 1 20 0 715 199 84 67 chr1 252497367 252497621 -29696043 + L1ME2 LINE L1 5914 6331 -3 369 325 85 24 chr1 252497684 252498052 -29695612 + L1ME4a LINE L1 5509 5894 -227 21 57 0 0 chr1 252498287 252498322 -29695342 + AT_rich Low_complexity Low_complexity 1 35 0 287 274 147 10 chr1 252499950 252500052 -29693612 - MIR3 SINE MIR -4 204 89 203 350 195 4 chr1 252500461 252500738 -29692926 + L2 LINE L2 2024 2353 -961 231 313 12 25 chr1 252500748 252500828 -29692836 + MIR SINE MIR 66 144 -118 222 195 0 0 chr1 252501338 252501379 -29692285 + (CA)n Simple_repeat Simple_repeat 1 41 0 293 356 123 31 chr1 252501400 252501726 -29691938 + L2 LINE L2 2895 3250 -22 338 324 57 23 chr1 252501907 252502083 -29691581 - MER117 DNA MER1_type -6 191 10 229 243 204 19 chr1 252502627 252502730 -29690934 - L2 LINE L2 -4 3309 3188 1189 325 46 23 chr1 252503334 252503898 -29689766 - MLT1L LTR MaLR -2 613 37 2255 92 3 0 chr1 252504189 252504483 -29689181 - AluSp SINE Alu -18 295 1 299 175 0 32 chr1 252504484 252504547 -29689117 - MIR SINE MIR -49 213 153 324 239 22 33 chr1 252504647 252504827 -29688837 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 232 305 287 18 chr1 252505117 252505399 -29688265 + L2 LINE L2 2618 2975 -339 207 311 42 50 chr1 252505443 252505562 -29688102 - L2 LINE L2 -7 3306 3189 299 373 0 52 chr1 252505690 252505824 -29687840 + L2 LINE L2 3137 3263 -9 27 49 0 0 chr1 252506200 252506241 -29687423 + AT_rich Low_complexity Low_complexity 1 41 0 1715 180 40 0 chr1 252507369 252507669 -29685995 - AluSx SINE Alu 0 312 1 1002 180 84 0 chr1 252508391 252508630 -29685034 - MER3 DNA MER1_type 0 2615 2357 403 233 17 17 chr1 252508630 252508750 -29684914 - MER3 DNA MER1_type -51 158 39 23 0 0 0 chr1 252508879 252508902 -29684762 + AT_rich Low_complexity Low_complexity 1 23 0 578 269 182 28 chr1 252509067 252509320 -29684344 - MLT1G1 LTR MaLR -290 305 14 2028 220 78 70 chr1 252509382 252510248 -29683416 - L1MDa LINE L1 -3250 3290 2395 547 261 37 6 chr1 252510341 252510502 -29683162 - L1MDa LINE L1 -4287 2253 2088 258 226 17 52 chr1 252511526 252511641 -29682023 + C-rich Low_complexity Low_complexity 4 114 0 208 317 49 12 chr1 252513543 252513625 -29680039 + MIR SINE MIR 49 133 -75 302 275 58 72 chr1 252513812 252513950 -29679714 - L2 LINE L2 -2 3311 3176 279 330 68 0 chr1 252514017 252514105 -29679559 + L2 LINE L2 3160 3253 -19 228 276 102 20 chr1 252514450 252514548 -29679116 + MIR SINE MIR 49 154 -108 5287 105 31 20 chr1 252515111 252515927 -29677737 - L1PA10 LINE L1 -4 6164 5340 8384 135 20 7 chr1 252515927 252517299 -29676365 + L1P LINE L1 3999 5389 -757 1261 78 0 24 chr1 252518863 252519030 -29674634 - AluSg/x SINE Alu -16 296 134 1743 75 4 0 chr1 252519030 252519257 -29674407 - AluY SINE Alu -7 304 77 435 219 49 41 chr1 252520169 252520292 -29673372 - MER21B LTR ERV1 -373 490 367 294 257 0 14 chr1 252520411 252520485 -29673179 - L1ME LINE L1 -510 5611 5539 29 60 0 0 chr1 252520960 252521010 -29672654 + AT_rich Low_complexity Low_complexity 1 50 0 360 282 229 5 chr1 252521496 252521684 -29671980 + MIR SINE MIR 5 234 -28 1532 177 10 37 chr1 252522107 252522406 -29671258 - AluJo SINE Alu -21 291 1 23 33 0 0 chr1 252523566 252523596 -29670068 + AT_rich Low_complexity Low_complexity 1 30 0 190 313 30 15 chr1 252523662 252523729 -29669935 - MIR SINE MIR -155 107 40 210 296 137 59 chr1 252524027 252524208 -29669456 - MIR SINE MIR -21 241 43 2421 25 3 0 chr1 252524529 252524813 -29668851 + AluYb8 SINE Alu 33 317 -1 24 0 0 0 chr1 252524834 252524858 -29668806 + AT_rich Low_complexity Low_complexity 1 24 0 383 214 184 0 chr1 252525962 252526065 -29667599 - MER3 DNA MER1_type -13 196 75 465 258 75 8 chr1 252526505 252526625 -29667039 - L2 LINE L2 -1 3312 3185 249 352 102 0 chr1 252527240 252527368 -29666296 - MIR3 SINE MIR -26 182 42 237 329 0 14 chr1 252527449 252527522 -29666142 - L2 LINE L2 -8 3264 3193 23 54 0 0 chr1 252528356 252528393 -29665271 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr1 252529598 252529633 -29664031 + AT_rich Low_complexity Low_complexity 1 35 0 186 228 70 35 chr1 252531083 252531140 -29662524 - MIR SINE MIR -46 216 158 188 242 198 33 chr1 252531175 252531266 -29662398 - MIR3 SINE MIR -93 115 10 * 330 179 202 45 chr1 252531264 252531396 -29662268 + MIR SINE MIR 97 252 -10 1716 239 86 0 chr1 252531587 252532064 -29661600 - L1ME1 LINE L1 -244 5991 5474 4879 229 52 10 chr1 252532094 252533450 -29660214 - L1ME1 LINE L1 -1222 4993 3582 1137 295 72 23 chr1 252533481 252533617 -29660047 - L1ME1 LINE L1 -4384 2012 1884 1968 154 3 10 chr1 252533617 252533929 -29659735 - AluSx SINE Alu -2 310 1 1137 295 72 23 chr1 252533929 252534405 -29659259 - L1ME1 LINE L1 -4512 1884 1370 1534 252 26 22 chr1 252534406 252534863 -29658801 - L1ME1 LINE L1 -5895 501 43 413 240 116 0 chr1 252534865 252534994 -29658670 - L1MEc LINE L1 -4536 1860 1717 2235 261 138 23 chr1 252535029 252535956 -29657708 - L1MEc LINE L1 -5328 1068 35 261 0 0 0 chr1 252536319 252536348 -29657316 + (TG)n Simple_repeat Simple_repeat 1 29 0 1287 117 84 5 chr1 252537341 252537554 -29656110 - MER30 DNA MER1_type 0 230 1 721 214 13 7 chr1 252537711 252537865 -29655799 - HERVL68 LTR ERVL -97 5433 5279 626 309 45 47 chr1 252537837 252538261 -29655403 - MER89-int LTR ERV1 -298 6503 6081 * 189 121 0 0 chr1 252538648 252538681 -29654983 + (TG)n Simple_repeat Simple_repeat 2 34 0 773 259 30 0 chr1 252539086 252539287 -29654377 - HERVL68 LTR ERVL -4753 777 571 966 198 110 105 chr1 252539541 252539904 -29653760 - MLT1A1 LTR MaLR 0 365 1 988 284 59 20 chr1 252539904 252540245 -29653419 - HERVL68 LTR ERVL -5131 399 46 277 311 78 0 chr1 252540719 252540822 -29652842 - HERVL68 LTR ERVL -699 2338 2228 3297 263 43 55 chr1 252540853 252541934 -29651730 - HERVL68 LTR ERVL -937 4593 3527 2375 256 50 27 chr1 252541923 252542584 -29651080 - HERVL68 LTR ERVL -2333 3197 2522 * 434 232 32 32 chr1 252542963 252543148 -29650516 - Charlie7 DNA MER1_type -2 2610 2426 453 19 0 0 chr1 252543976 252544030 -29649634 + (TG)n Simple_repeat Simple_repeat 2 55 0 206 264 42 56 chr1 252545196 252545268 -29648396 - MIR SINE MIR -184 78 8 311 292 0 0 chr1 252545293 252545365 -29648299 + L2 LINE L2 3201 3272 0 339 182 0 0 chr1 252546828 252546883 -29646781 + MLT1J2 LTR MaLR 121 175 -275 713 167 8 8 chr1 252546889 252547009 -29646655 + FRAM SINE Alu 2 121 -55 248 111 19 0 chr1 252547017 252547071 -29646593 + (TA)n Simple_repeat Simple_repeat 1 55 0 333 0 0 0 chr1 252547072 252547109 -29646555 + (TC)n Simple_repeat Simple_repeat 2 38 0 243 0 0 0 chr1 252547108 252547135 -29646529 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 41 36 0 0 chr1 252548675 252548730 -29644934 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr1 252549588 252549610 -29644054 + AT_rich Low_complexity Low_complexity 1 22 0 2232 88 7 3 chr1 252549613 252549908 -29643756 + AluSq SINE Alu 3 298 -15 1585 162 0 4 chr1 252550639 252550886 -29642778 + AluSx SINE Alu 3 248 -64 512 167 42 24 chr1 252550921 252551089 -29642575 + CT-rich Low_complexity Low_complexity 2 172 0 187 169 0 51 chr1 252551111 252551170 -29642494 + CT-rich Low_complexity Low_complexity 2 57 0 228 213 33 0 chr1 252551184 252551245 -29642419 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 214 281 0 0 chr1 252551322 252551386 -29642278 + C-rich Low_complexity Low_complexity 1 64 0 549 0 0 0 chr1 252551513 252551574 -29642090 + (TTCC)n Simple_repeat Simple_repeat 2 62 0 1885 154 3 3 chr1 252552932 252553225 -29640439 - AluJb SINE Alu -19 293 1 281 284 128 9 chr1 252553320 252553429 -29640235 + MIR SINE MIR 84 205 -57 1244 289 93 36 chr1 252555614 252556760 -29636904 - L1ME3 LINE L1 -215 6016 4802 742 60 0 0 chr1 252556795 252556895 -29636769 - L1PA14 LINE L1 0 7599 7500 17644 182 25 23 chr1 252556902 252561481 -29632183 - L1PA14 LINE L1 -262 7337 2782 4103 268 85 51 chr1 252561484 252563808 -29629856 - L1ME3 LINE L1 -1446 4769 2367 4101 152 34 39 chr1 252563808 252564885 -29628779 - MER11A LTR ERVK 0 1266 1 395 261 41 21 chr1 252564886 252565135 -29628529 - L1ME3 LINE L1 -3845 2370 2162 5522 135 32 1 chr1 252565145 252565816 -29627848 + L1PB1 LINE L1 5100 5811 -340 318 50 0 0 chr1 252565816 252565856 -29627808 + (TA)n Simple_repeat Simple_repeat 1 40 0 5522 135 32 1 chr1 252565856 252566208 -29627456 + L1PB1 LINE L1 5811 6151 0 343 279 109 39 chr1 252566567 252566850 -29626814 + L1M4 LINE L1 2110 2412 -3734 47 33 0 0 chr1 252567027 252567088 -29626576 + AT_rich Low_complexity Low_complexity 1 61 0 269 161 32 0 chr1 252567093 252567155 -29626509 + (CATA)n Simple_repeat Simple_repeat 1 64 0 365 343 34 17 chr1 252567365 252567598 -29626066 + L1M4 LINE L1 2852 3088 -3058 15694 138 43 1 chr1 252567939 252570478 -29623186 - L1PBa LINE L1 -4215 2648 2 21 0 0 0 chr1 252570504 252570525 -29623139 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 252571359 252571389 -29622275 + AT_rich Low_complexity Low_complexity 1 30 0 7155 135 16 4 chr1 252572039 252573253 -29620411 - Tigger3b DNA MER2_type -1 1230 2 499 190 21 106 chr1 252574081 252574223 -29619441 - MIR SINE MIR -113 149 20 336 329 77 7 chr1 252574241 252574384 -29619280 + MER5A DNA MER1_type 36 188 -1 1202 285 49 51 chr1 252574448 252575045 -29618619 - L2 LINE L2 -4 3309 2712 21 57 0 0 chr1 252576030 252576065 -29617599 + AT_rich Low_complexity Low_complexity 1 35 0 1504 156 41 58 chr1 252576421 252576716 -29616948 + AluSx SINE Alu 3 292 -20 538 243 201 15 chr1 252576774 252577042 -29616622 + L1M4b LINE L1 1321 1638 -5221 2134 116 10 3 chr1 252577687 252577990 -29615674 - AluSq SINE Alu -8 305 1 2037 143 0 0 chr1 252578313 252578614 -29615050 - AluSg SINE Alu -9 301 1 915 187 31 67 chr1 252579765 252579990 -29613674 + MER20 DNA MER1_type 1 217 -2 261 0 0 0 chr1 252580061 252580090 -29613574 + (TTG)n Simple_repeat Simple_repeat 2 30 0 817 271 38 8 chr1 252580166 252580402 -29613262 + MIR SINE MIR 3 245 -17 198 103 0 0 chr1 252580418 252580447 -29613217 + (TC)n Simple_repeat Simple_repeat 2 30 0 412 223 47 65 chr1 252580556 252580728 -29612936 + MIR SINE MIR 37 206 -50 312 253 30 0 chr1 252582870 252582969 -29610695 + MLT1H LTR MaLR 136 237 -312 236 197 0 16 chr1 252583536 252583597 -29610067 + (TCTCTG)n Simple_repeat Simple_repeat 1 60 0 2227 152 40 31 chr1 252583651 252584104 -29609560 - L1MB5 LINE L1 -12 6162 5706 674 210 98 28 chr1 252584717 252584925 -29608739 + MIR SINE MIR 7 232 -30 906 107 29 0 chr1 252585014 252585154 -29608510 - L1MA3 LINE L1 0 6305 6162 1867 126 97 26 chr1 252585259 252585609 -29608055 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr1 252585937 252585964 -29607700 + AT_rich Low_complexity Low_complexity 1 27 0 340 279 40 40 chr1 252585964 252586186 -29607478 - HAL1 LINE L1 0 2507 2286 309 309 96 0 chr1 252586349 252586443 -29607221 + MIR SINE MIR 16 118 -144 22 0 0 0 chr1 252586764 252586786 -29606878 + AT_rich Low_complexity Low_complexity 1 22 0 1181 266 62 46 chr1 252586790 252587656 -29606008 - HAL1 LINE L1 -882 1625 746 358 304 232 36 chr1 252587945 252588251 -29605413 - HAL1 LINE L1 -2075 432 67 1900 156 7 3 chr1 252588482 252588777 -29604887 - AluSx SINE Alu -16 296 1 4706 140 10 92 chr1 252589884 252590228 -29603436 + L1MC1 LINE L1 5330 5700 -633 1962 146 143 8 chr1 252590228 252590605 -29603059 + MSTA LTR MaLR 1 428 0 4706 140 10 92 chr1 252590605 252591340 -29602324 + L1MC1 LINE L1 5700 6316 -17 263 324 103 44 chr1 252592273 252592409 -29601255 - MIR3 SINE MIR -62 146 3 2864 148 56 10 chr1 252592790 252593309 -29600355 + MER41C LTR ERV1 1 543 -11 580 356 48 8 chr1 252593417 252593667 -29599997 + MIR SINE MIR 2 261 -1 775 249 39 5 chr1 252594761 252594966 -29598698 - LTR16A LTR ERVL -5 445 234 252 232 47 54 chr1 252595005 252595159 -29598505 - LTR16A LTR ERVL -299 151 1 196 262 164 0 chr1 252595166 252595227 -29598437 + MIR SINE MIR 49 119 -143 182 204 23 0 chr1 252596076 252596120 -29597544 + L2 LINE L2 3269 3313 0 21 57 0 0 chr1 252596703 252596738 -29596926 + AT_rich Low_complexity Low_complexity 1 35 0 330 331 181 6 chr1 252598046 252598206 -29595458 - MIR SINE MIR -37 225 38 1729 176 0 0 chr1 252598213 252598507 -29595157 + AluJb SINE Alu 11 304 0 435 282 14 35 chr1 252599706 252599848 -29593816 - MIR SINE MIR -113 149 11 1602 176 3 17 chr1 252600169 252600458 -29593206 - AluJo SINE Alu -27 285 1 2465 66 0 3 chr1 252600706 252601010 -29592654 - AluY SINE Alu -8 303 1 811 169 0 0 chr1 252601123 252601247 -29592417 + FLAM_A SINE Alu 8 131 -11 205 265 0 0 chr1 252602128 252602177 -29591487 + GA-rich Low_complexity Low_complexity 3 51 0 228 350 37 25 chr1 252602723 252602886 -29590778 + MIR SINE MIR 92 256 -6 241 336 112 9 chr1 252603166 252603282 -29590382 + L2 LINE L2 3137 3264 -8 511 272 52 47 chr1 252603386 252603618 -29590046 - L2 LINE L2 -9 3304 3072 395 297 22 0 chr1 252604534 252604672 -29588992 + MARNA DNA Mariner 427 567 -19 227 289 0 0 chr1 252605861 252605913 -29587751 - L2 LINE L2 -12 3301 3250 393 284 66 56 chr1 252606343 252606476 -29587188 - MARNA DNA Mariner -148 438 308 1443 215 129 17 chr1 252606476 252606885 -29586779 + MLT2B1 LTR ERVL 3 472 -48 1097 98 12 0 chr1 252606885 252607058 -29586606 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 1443 215 129 17 chr1 252607058 252607114 -29586550 + MLT2B1 LTR ERVL 472 520 0 393 284 66 56 chr1 252607114 252607185 -29586479 - MARNA DNA Mariner -278 308 239 375 78 0 0 chr1 252607185 252607236 -29586428 + (TA)n Simple_repeat Simple_repeat 2 52 0 393 284 66 56 chr1 252607236 252607332 -29586332 - MARNA DNA Mariner -347 239 134 256 271 35 0 chr1 252607332 252607417 -29586247 + MLT1J1 LTR MaLR 1 88 -358 237 234 71 15 chr1 252607555 252607663 -29586001 + MLT1J1 LTR MaLR 291 409 -41 2201 104 14 9 chr1 252607803 252608149 -29585515 + THE1A LTR MaLR 1 348 -7 10081 95 3 22 chr1 252608149 252609640 -29584024 + THE1A-int LTR MaLR 118 1580 0 2308 113 11 8 chr1 252609640 252609994 -29583670 + THE1A LTR MaLR 1 355 0 198 318 197 30 chr1 252610242 252610374 -29583290 + MIR SINE MIR 35 188 -74 433 335 64 14 chr1 252610947 252611165 -29582499 + MIR SINE MIR 5 233 -29 206 298 0 0 chr1 252611933 252611980 -29581684 - L2 LINE L2 -8 3264 3218 21 36 0 0 chr1 252613640 252613668 -29579996 + AT_rich Low_complexity Low_complexity 1 28 0 2122 109 3 33 chr1 252613707 252614011 -29579653 - AluSx SINE Alu -17 295 1 3750 129 20 2 chr1 252614011 252614598 -29579066 - L1PA15 LINE L1 -9 6156 5559 2213 87 40 0 chr1 252614611 252614909 -29578755 - AluY SINE Alu -1 310 1 408 295 9 9 chr1 252614992 252615104 -29578560 - MER5A DNA MER1_type -77 112 1 192 135 0 0 chr1 252615178 252615215 -29578449 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr1 252616217 252616240 -29577424 + AT_rich Low_complexity Low_complexity 1 23 0 1817 215 25 7 chr1 252616320 252616761 -29576903 - L1 LINE L1 -2189 3957 3509 2215 207 12 4 chr1 252616773 252617257 -29576407 + L1MB3 LINE L1 5696 6183 0 183 313 176 28 chr1 252617307 252617483 -29576181 + L2 LINE L2 2652 2853 -461 293 200 372 14 chr1 252619208 252619423 -29574241 - LTR33A LTR ERVL -4 519 408 450 266 266 31 chr1 252619438 252619882 -29573782 - LTR50 LTR ERVL -239 556 9 536 287 82 21 chr1 252620250 252620532 -29573132 - ERVL LTR ERVL -365 5399 5101 7286 48 0 0 chr1 252620625 252621817 -29571847 - L1PA5 LINE L1 -6 6148 4957 186 118 0 0 chr1 252624885 252624919 -29568745 + (TG)n Simple_repeat Simple_repeat 2 35 0 1812 101 0 4 chr1 252626155 252626392 -29567272 - AluSq SINE Alu -77 236 1 980 157 6 0 chr1 252627131 252627303 -29566361 + AluSc SINE Alu 135 307 -2 1856 134 94 29 chr1 252627814 252628156 -29565508 + THE1B LTR MaLR 1 364 0 295 267 93 12 chr1 252631488 252631574 -29562090 - MLT1H LTR MaLR -16 579 487 * 563 304 71 74 chr1 252631550 252631915 -29561749 - MLT1H LTR MaLR -185 364 1 421 223 61 74 chr1 252632245 252632393 -29561271 + MLT1G LTR MaLR 156 301 -248 742 206 170 37 chr1 252632512 252632730 -29560934 + MLT1G LTR MaLR 309 590 0 1382 249 60 53 chr1 252633040 252633493 -29560171 - MLT1E2 LTR MaLR -170 456 1 366 320 39 0 chr1 252633505 252633608 -29560056 - MER91C DNA MER1_type -32 108 2 306 0 0 0 chr1 252634705 252634739 -29558925 + (TG)n Simple_repeat Simple_repeat 2 35 0 211 365 27 0 chr1 252634825 252634899 -29558765 + L2 LINE L2 3197 3272 0 209 340 86 79 chr1 252635894 252636209 -29557455 - L2 LINE L2 -5 3267 2951 465 348 40 28 chr1 252636428 252636675 -29556989 + MIR SINE MIR 13 262 0 1471 222 99 36 chr1 252637044 252637493 -29556171 - MLT1D LTR MaLR 0 406 1 826 269 42 0 chr1 252637846 252638058 -29555606 + MER58A DNA MER1_type 2 222 -2 299 322 11 11 chr1 252638060 252638150 -29555514 + MIR SINE MIR 16 105 -157 445 350 0 8 chr1 252638202 252638325 -29555339 + MLT1K LTR MaLR 44 165 -423 625 270 38 24 chr1 252638466 252638677 -29554987 + MLT1K LTR MaLR 375 588 0 270 225 234 18 chr1 252638678 252638789 -29554875 + MIR SINE MIR 101 235 -27 32 26 0 0 chr1 252639035 252639074 -29554590 + AT_rich Low_complexity Low_complexity 1 39 0 233 369 35 7 chr1 252639390 252639531 -29554133 + MIR SINE MIR 20 143 -65 1635 210 60 29 chr1 252642353 252642801 -29550863 + LTR40b LTR ERVL 1 462 0 214 359 116 31 chr1 252644355 252645027 -29548637 + L2 LINE L2 1834 2562 -752 2389 158 63 19 chr1 252646228 252646704 -29546960 - LOR1a LTR ERV1 0 497 1 235 204 19 19 chr1 252648942 252648996 -29544668 - L2 LINE L2 -4 3309 3256 387 287 162 0 chr1 252649163 252649330 -29544334 - MIR SINE MIR -56 206 13 181 400 131 8 chr1 252649448 252649578 -29544086 - L2 LINE L2 -1 3271 3126 236 191 32 0 chr1 252649761 252649824 -29543840 + (TATG)n Simple_repeat Simple_repeat 4 68 0 522 295 82 38 chr1 252652265 252652426 -29541238 + MIR SINE MIR 3 181 -81 2182 41 48 0 chr1 252652426 252652721 -29540943 + AluY SINE Alu 1 308 0 522 295 82 38 chr1 252652721 252652807 -29540857 + MIR SINE MIR 181 262 0 219 415 90 20 chr1 252652938 252653138 -29540526 + L2 LINE L2 2567 2780 -534 1960 297 68 40 chr1 252653142 252654379 -29539285 + L1MC3 LINE L1 36 1319 -5077 2013 130 3 10 chr1 252654379 252654671 -29538993 - AluSx SINE Alu -20 292 3 1960 297 68 40 chr1 252654671 252654867 -29538797 + L1MC3 LINE L1 1319 1508 -4888 1062 222 87 60 chr1 252654876 252655266 -29538398 + L1MC3 LINE L1 1651 2068 -4328 552 237 237 0 chr1 252655266 252655435 -29538229 + MER3 DNA MER1_type 1 209 0 1062 222 87 60 chr1 252655435 252655696 -29537968 + L1MC3 LINE L1 2068 2320 -4076 304 248 50 0 chr1 252655713 252655814 -29537850 + L1MC3 LINE L1 2399 2504 -3711 * 1162 185 54 10 chr1 252655809 252656106 -29537558 + L1MC3 LINE L1 2713 3022 -3193 2609 224 80 67 chr1 252656142 252656397 -29537267 - Charlie1 DNA MER1_type -9 2752 2502 2178 119 0 3 chr1 252656397 252656700 -29536964 + AluSc SINE Alu 1 302 -7 2609 224 80 67 chr1 252656700 252657555 -29536109 - Charlie1 DNA MER1_type -259 2502 1627 4183 195 86 28 chr1 252657584 252658587 -29535077 + L1MC3 LINE L1 5421 6481 -1373 1994 143 56 8 chr1 252658609 252658967 -29534697 - THE1C LTR MaLR 0 375 1 255 61 0 0 chr1 252658997 252659030 -29534634 + (TG)n Simple_repeat Simple_repeat 1 33 0 257 366 30 15 chr1 252660635 252660766 -29532898 + L2 LINE L2 3180 3312 -1 280 336 161 0 chr1 252662242 252662385 -29531279 - MIR3 SINE MIR -5 203 38 455 307 66 6 chr1 252662449 252662615 -29531049 + MIR SINE MIR 66 241 -21 183 371 36 29 chr1 252662959 252663099 -29530565 - L2 LINE L2 -576 2738 2598 543 306 65 33 chr1 252663403 252663447 -29530217 + L2 LINE L2 2638 2679 -635 817 189 196 0 chr1 252663447 252663717 -29529947 + MER33 DNA MER1_type 2 324 0 543 306 65 33 chr1 252663717 252663917 -29529747 + L2 LINE L2 2679 2890 -424 715 291 87 70 chr1 252663919 252664518 -29529146 + MLT1L LTR MaLR 1 609 -6 284 257 98 55 chr1 252664623 252664806 -29528858 + L2 LINE L2 3030 3220 -93 821 275 59 31 chr1 252666576 252666900 -29526764 - MLT1I LTR MaLR -18 391 59 2906 118 9 33 chr1 252667206 252667665 -29525999 + MER75 DNA T2_type 1 448 -66 526 89 25 13 chr1 252667674 252667753 -29525911 - MER75 DNA T2_type 0 514 435 388 209 54 54 chr1 252667972 252668101 -29525563 + Charlie4 DNA MER1_type 1831 1959 -2 401 280 157 60 chr1 252668339 252668803 -29524861 - MLT1L LTR MaLR -102 513 5 2153 123 0 7 chr1 252669448 252669749 -29523915 - AluSg SINE Alu -11 299 1 227 384 67 65 chr1 252669855 252670196 -29523468 - L2 LINE L2 0 3272 2931 2001 177 38 18 chr1 252671690 252672085 -29521579 + MER57A LTR ERV1 1 403 0 22 35 0 0 chr1 252672439 252672468 -29521196 + AT_rich Low_complexity Low_complexity 1 29 0 383 311 47 9 chr1 252672506 252672612 -29521052 - MIR3 SINE MIR 0 208 99 1827 168 0 13 chr1 252672797 252673100 -29520564 + AluJb SINE Alu 3 301 -11 243 79 0 0 chr1 252674041 252674079 -29519585 + (A)n Simple_repeat Simple_repeat 1 38 0 3195 166 49 5 chr1 252674643 252675239 -29518425 + LTR26E LTR ERV1 1 622 0 2255 75 3 75 chr1 252675362 252675693 -29517971 + AluSp SINE Alu 1 307 -6 4704 188 23 45 chr1 252675791 252675914 -29517750 + L1MB3 LINE L1 4607 4731 -1452 2360 79 0 13 chr1 252675914 252676218 -29517446 - AluY SINE Alu -11 300 1 4704 188 23 45 chr1 252676218 252677705 -29515959 + L1MB3 LINE L1 4731 6181 -2 36 70 0 0 chr1 252677845 252677916 -29515748 + AT_rich Low_complexity Low_complexity 1 71 0 913 188 64 5 chr1 252678046 252678248 -29515416 - MER58A DNA MER1_type -10 214 1 2551 97 42 0 chr1 252678340 252678700 -29514964 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr1 252679844 252679866 -29513798 + AT_rich Low_complexity Low_complexity 1 22 0 345 290 11 0 chr1 252680246 252680339 -29513325 - MIR SINE MIR -69 193 100 1004 283 84 15 chr1 252680339 252680742 -29512922 - LTR16B LTR ERVL 0 464 34 838 217 101 19 chr1 252680923 252681130 -29512534 - MER58A DNA MER1_type 0 224 1 2470 125 8 0 chr1 252681221 252681582 -29512082 + THE1B LTR MaLR 1 364 0 207 0 0 0 chr1 252681909 252681932 -29511732 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2297 100 0 10 chr1 252682530 252682839 -29510825 - AluY SINE Alu -5 306 1 279 325 296 18 chr1 252686661 252687390 -29506274 + L2 LINE L2 2040 2971 -343 398 242 11 11 chr1 252688295 252688386 -29505278 + L2 LINE L2 3223 3313 0 195 42 0 0 chr1 252688491 252688515 -29505149 + (TC)n Simple_repeat Simple_repeat 1 24 0 1528 201 11 20 chr1 252689480 252689828 -29503836 - MER34C LTR ERV1 -200 385 41 570 100 0 0 chr1 252689917 252689997 -29503667 + MADE1 DNA Mariner 1 80 0 2039 187 153 32 chr1 252690349 252691001 -29502663 + LTR48 LTR ERV1 2 652 -55 315 190 51 13 chr1 252691003 252691082 -29502582 + LTR49-int LTR ERV1 1795 1876 -4455 252 158 13 53 chr1 252691359 252691435 -29502229 + LTR49-int LTR ERV1 1305 1377 -4954 1037 193 63 61 chr1 252691595 252691963 -29501701 + LTR49-int LTR ERV1 1373 2113 -3833 617 192 24 36 chr1 252691979 252692146 -29501518 + LTR49-int LTR ERV1 443 607 -4329 1306 266 12 6 chr1 252692198 252692529 -29501135 + LTR49-int LTR ERV1 1908 2240 -4091 1016 156 46 29 chr1 252693036 252693274 -29500390 + LTR49-int LTR ERV1 3031 3272 -3059 445 145 0 0 chr1 252693334 252693403 -29500261 + LTR49-int LTR ERV1 3272 3340 -2991 549 196 0 0 chr1 252693466 252693563 -29500101 + LTR49-int LTR ERV1 3357 3453 -2878 486 253 26 31 chr1 252693795 252693989 -29499675 + LTR49-int LTR ERV1 1758 1950 -3173 24 77 0 0 chr1 252694124 252694176 -29499488 + AT_rich Low_complexity Low_complexity 1 52 0 438 179 111 58 chr1 252694196 252694403 -29499261 + LTR49-int LTR ERV1 3462 3679 -2652 1362 153 19 8 chr1 252694540 252694802 -29498862 - L1MB3 LINE L1 -55 6128 5864 8430 174 32 23 chr1 252694802 252695999 -29497665 - L1PA13 LINE L1 0 6814 5629 2508 76 0 0 chr1 252695999 252696300 -29497364 + AluY SINE Alu 1 301 -10 8430 174 32 23 chr1 252696300 252697677 -29495987 - L1PA13 LINE L1 -1185 5629 4217 11994 195 28 10 chr1 252697683 252700466 -29493198 - L1PA13 LINE L1 -3947 2850 1 1329 290 45 10 chr1 252700481 252700648 -29493016 + Charlie2b DNA MER1_type 508 668 -2114 249 33 0 0 chr1 252700648 252700678 -29492986 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 2019 138 3 17 chr1 252700678 252700976 -29492688 - AluSx SINE Alu -17 295 2 293 100 20 0 chr1 252700976 252701026 -29492638 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 1329 290 45 10 chr1 252701026 252701349 -29492315 + Charlie2b DNA MER1_type 667 1017 -1765 290 202 101 10 chr1 252701438 252701537 -29492127 + Charlie2b DNA MER1_type 1160 1267 -1515 * 449 250 14 28 chr1 252701528 252701740 -29491924 + Charlie2b DNA MER1_type 2071 2279 -503 321 275 49 0 chr1 252701708 252701850 -29491814 + Charlie2b DNA MER1_type 2617 2765 -17 * 445 327 34 95 chr1 252703356 252703714 -29489950 - L2 LINE L2 -25 3247 2912 337 281 39 59 chr1 252703758 252703911 -29489753 - L2 LINE L2 -556 2758 2609 745 234 7 13 chr1 252704050 252704252 -29489412 - MLT1B LTR MaLR 0 374 174 210 143 0 0 chr1 252704256 252704291 -29489373 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 593 215 16 105 chr1 252704293 252704484 -29489180 - MLT1A2 LTR MaLR -189 185 1 1356 106 0 22 chr1 252704807 252705033 -29488631 + L1MA4 LINE L1 6008 6228 -72 204 250 44 59 chr1 252705215 252705283 -29488381 - L2 LINE L2 0 3272 3206 271 250 31 0 chr1 252707296 252707360 -29486304 - MLT1L LTR MaLR -342 273 208 255 235 0 74 chr1 252707471 252707552 -29486112 - MLT1L LTR MaLR -540 75 1 1805 187 16 11 chr1 252707894 252708257 -29485407 - MLT1A1 LTR MaLR 0 365 1 223 353 62 49 chr1 252708784 252709008 -29484656 - L2 LINE L2 -164 3108 2882 1856 151 4 0 chr1 252709344 252709622 -29484042 + AluJb SINE Alu 1 279 -33 216 0 0 0 chr1 252709622 252709646 -29484018 + (CA)n Simple_repeat Simple_repeat 1 24 0 269 251 171 16 chr1 252709739 252710003 -29483661 - MLT1J2 LTR MaLR 0 446 130 2906 126 144 140 chr1 252710646 252712090 -29481574 + pTR5 LTR ERV1 742 2606 0 1401 199 76 7 chr1 252712213 252712504 -29481160 - AluJo SINE Alu -1 311 1 242 324 14 55 chr1 252712614 252712759 -29480905 + MIR SINE MIR 124 262 0 188 258 289 10 chr1 252713925 252714022 -29479642 - L2 LINE L2 0 3272 3149 276 236 0 0 chr1 252714546 252714601 -29479063 + L2 LINE L2 3216 3270 -2 296 311 189 0 chr1 252714606 252714712 -29478952 + MIR SINE MIR 45 170 -92 199 342 40 0 chr1 252714969 252715045 -29478619 - L2 LINE L2 -5 3267 3189 500 283 113 4 chr1 252715089 252715548 -29478116 + HAL1 LINE L1 1306 1917 -590 423 155 0 0 chr1 252715785 252715856 -29477808 - MER66A LTR ERV1 -239 239 169 818 235 36 29 chr1 252715856 252716133 -29477531 - MLT1C LTR MaLR -35 432 154 1965 117 96 18 chr1 252716180 252716565 -29477099 - L1MC3 LINE L1 0 7785 7371 1131 191 69 101 chr1 252716566 252717011 -29476653 - MER66A LTR ERV1 0 478 97 1264 234 28 3 chr1 252717090 252717411 -29476253 - L1MC3 LINE L1 -406 7379 7051 4492 144 7 18 chr1 252718646 252719419 -29474245 - L1MC1 LINE L1 0 6333 5570 459 0 0 0 chr1 252719721 252719772 -29473892 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr1 252719771 252719798 -29473866 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 824 279 42 0 chr1 252722318 252722533 -29471131 - MER58A DNA MER1_type 0 224 1 246 264 123 19 chr1 252723879 252723985 -29469679 - MIR SINE MIR -80 182 66 282 244 24 24 chr1 252724121 252724248 -29469416 + (TTATA)n Simple_repeat Simple_repeat 3 129 0 232 252 10 68 chr1 252725009 252725112 -29468552 + MIR SINE MIR 89 185 -77 * 574 254 125 17 chr1 252725076 252725169 -29468495 - MIR SINE MIR -4 258 176 1718 176 89 3 chr1 252725169 252725505 -29468159 - MLT1A1 LTR MaLR 0 365 1 574 254 125 17 chr1 252725505 252725643 -29468021 - MIR SINE MIR -86 176 2 417 262 8 24 chr1 252725750 252725876 -29467788 + MIR SINE MIR 118 241 -21 282 235 132 93 chr1 252726690 252726786 -29466878 - MIR SINE MIR 0 262 171 2142 127 0 0 chr1 252726786 252727078 -29466586 - AluSx SINE Alu -15 297 6 282 235 132 93 chr1 252727078 252727185 -29466479 - MIR SINE MIR -91 171 51 206 192 19 0 chr1 252729119 252729171 -29464493 + (TG)n Simple_repeat Simple_repeat 2 54 0 1798 177 3 0 chr1 252729564 252729875 -29463789 + AluJo SINE Alu 1 312 0 200 263 59 68 chr1 252729949 252730067 -29463597 - L2 LINE L2 0 3313 3197 201 323 94 10 chr1 252730080 252730176 -29463488 - MIR3 SINE MIR -6 202 99 1681 191 23 3 chr1 252730200 252730499 -29463165 + AluJb SINE Alu 1 305 -7 321 229 214 14 chr1 252730852 252730992 -29462672 + L3 LINE CR1 879 1046 -531 836 132 0 23 chr1 252731027 252731156 -29462508 - AluJo SINE Alu -176 136 11 244 213 13 0 chr1 252731445 252731520 -29462144 - FRAM/FAM SINE Alu -86 80 28 259 382 20 13 chr1 252731522 252731674 -29461990 + L3 LINE CR1 1340 1492 -85 448 288 82 27 chr1 252732015 252732199 -29461465 + MIR SINE MIR 50 243 -19 2492 156 110 2 chr1 252733028 252733457 -29460207 - MER70B LTR ERVL -103 475 1 252 297 85 0 chr1 252733929 252734047 -29459617 + LTR67 LTR ERVL 424 551 -6 334 267 7 47 chr1 252735195 252735345 -29458319 - L2 LINE L2 -11 3302 3159 383 307 131 11 chr1 252735368 252735544 -29458120 - MLT1L LTR MaLR -19 596 400 2229 90 0 17 chr1 252735730 252736020 -29457644 + AluSg SINE Alu 1 285 -25 639 382 36 7 chr1 252736136 252736442 -29457222 - MER115 DNA AcHobo -210 483 169 1055 218 51 8 chr1 252736447 252736704 -29456960 + ORSL DNA AcHobo 5 272 -3 283 306 25 25 chr1 252736749 252736870 -29456794 - MER115 DNA AcHobo -570 123 3 424 31 46 0 chr1 252737913 252737978 -29455686 + (TTTTA)n Simple_repeat Simple_repeat 5 72 0 2217 100 0 0 chr1 252737978 252738258 -29455406 - AluSx SINE Alu -32 280 1 858 119 0 0 chr1 252740151 252740285 -29453379 + (TA)n Simple_repeat Simple_repeat 1 134 0 3214 230 86 46 chr1 252740538 252741776 -29451888 + L1MC5 LINE L1 6614 7901 -60 291 255 64 0 chr1 252742262 252742356 -29451308 + MIR SINE MIR 89 188 -74 214 256 0 0 chr1 252742405 252742448 -29451216 + polypyrimidine Low_complexity Low_complexity 1 43 0 2918 158 48 43 chr1 252743784 252744385 -29449279 - MER6A DNA MER2_type 0 605 2 2196 79 4 0 chr1 252745797 252746074 -29447590 - AluSp SINE Alu -1 312 35 228 178 0 22 chr1 252747219 252747264 -29446400 + CT-rich Low_complexity Low_complexity 1 44 0 204 111 0 0 chr1 252747291 252747327 -29446337 + (TC)n Simple_repeat Simple_repeat 1 36 0 404 165 186 10 chr1 252747352 252747449 -29446215 - MIR SINE MIR -25 237 124 1516 257 73 47 chr1 252747794 252748831 -29444833 - L1ME3A LINE L1 -313 5849 4788 241 297 66 0 chr1 252748901 252748992 -29444672 + MIR SINE MIR 87 183 -79 198 103 0 0 chr1 252749079 252749108 -29444556 + (T)n Simple_repeat Simple_repeat 1 29 0 318 245 41 20 chr1 252749113 252749211 -29444453 - MLT1K LTR MaLR -8 580 481 434 291 102 36 chr1 252750347 252750846 -29442818 - HAL1 LINE L1 -617 1890 1324 1353 227 79 34 chr1 252750937 252751316 -29442348 + MSTD LTR MaLR 1 396 0 2483 259 64 33 chr1 252751486 252752268 -29441396 - L1ME3 LINE L1 -199 5963 5207 1923 138 0 7 chr1 252752268 252752544 -29441120 + AluSx SINE Alu 1 274 -38 405 0 0 0 chr1 252752550 252752595 -29441069 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2483 259 64 33 chr1 252752595 252753486 -29440178 - L1ME3 LINE L1 -959 5203 4206 439 297 152 39 chr1 252753487 252753797 -29439867 - HAL1 LINE L1 -1341 1166 822 236 234 16 16 chr1 252754406 252754534 -29439130 + (TA)n Simple_repeat Simple_repeat 1 128 0 1262 269 75 16 chr1 252754746 252755133 -29438531 + LTR40a LTR ERVL 90 499 -20 314 28 0 0 chr1 252755176 252755212 -29438452 + (C)n Simple_repeat Simple_repeat 1 36 0 30 27 0 0 chr1 252757551 252757588 -29436076 + AT_rich Low_complexity Low_complexity 1 37 0 1289 88 22 11 chr1 252757591 252757773 -29435891 - AluSq SINE Alu -18 295 112 257 247 7 0 chr1 252757874 252758024 -29435640 + (GAATG)n Satellite Satellite 1 151 0 705 167 0 0 chr1 252758085 252758259 -29435405 + (GAATG)n Satellite Satellite 1 174 0 692 180 0 14 chr1 252758292 252758654 -29435010 + (GAATG)n Satellite Satellite 1 357 0 477 204 0 0 chr1 252758709 252758881 -29434783 + (GAATG)n Satellite Satellite 4 175 0 709 153 6 6 chr1 252758914 252759091 -29434573 + (GAATG)n Satellite Satellite 4 180 0 710 168 0 25 chr1 252759145 252759593 -29434071 + (GAATG)n Satellite Satellite 1 436 0 308 64 0 0 chr1 252759744 252759791 -29433873 + AluSx SINE Alu 255 301 0 2296 121 0 0 chr1 252759887 252760185 -29433479 - AluSx SINE Alu -14 298 1 2217 104 3 13 chr1 252760857 252761156 -29432508 + AluSq SINE Alu 1 296 -17 299 265 0 12 chr1 252761167 252761250 -29432414 - HERVL40 LTR ERVL -2430 3100 3019 2058 184 91 32 chr1 252761363 252761826 -29431838 + LTR2B LTR ERV1 1 490 0 338 320 46 39 chr1 252761935 252762088 -29431576 - HERVL40 LTR ERVL -2931 2092 1939 627 271 92 42 chr1 252762444 252762728 -29430936 - HERVL40 LTR ERVL -1723 3807 3510 672 229 132 19 chr1 252762728 252762933 -29430731 - HERVL40 LTR ERVL -3193 2337 2110 2152 137 0 6 chr1 252763343 252763657 -29430007 - AluSx SINE Alu 0 312 1 1810 110 117 0 chr1 252763677 252763941 -29429723 - AluSx SINE Alu -17 295 1 1101 199 134 50 chr1 252763942 252764141 -29429523 - REP3 LTR ERV -258 304 74 2206 117 3 3 chr1 252764141 252764439 -29429225 + AluSx SINE Alu 1 298 -14 1101 199 134 50 chr1 252764439 252764516 -29429148 - REP3 LTR ERV -488 74 5 310 247 12 0 chr1 252764577 252764658 -29429006 - Charlie1 DNA MER1_type -2679 82 1 765 187 0 8 chr1 252764823 252764946 -29428718 - FLAM_A SINE Alu -11 122 1 2335 82 10 0 chr1 252764999 252765292 -29428372 + AluY SINE Alu 1 296 -15 359 240 0 48 chr1 252765308 252765412 -29428252 + L1ME3A LINE L1 4894 4992 -1154 * 369 226 53 23 chr1 252765387 252765493 -29428171 + L1ME3A LINE L1 5836 5948 -222 2257 103 3 10 chr1 252765493 252765626 -29428038 + AluSp SINE Alu 3 135 -178 2192 128 0 0 chr1 252765626 252765924 -29427740 + AluY SINE Alu 1 298 -13 2257 103 3 10 chr1 252765924 252766102 -29427562 + AluSp SINE Alu 135 312 -1 369 226 53 23 chr1 252766102 252766128 -29427536 + L1ME3A LINE L1 5948 5972 -198 2119 134 0 3 chr1 252766163 252766468 -29427196 + AluJb SINE Alu 1 304 -8 2229 100 3 3 chr1 252766527 252766818 -29426846 + AluSg SINE Alu 1 291 -19 414 139 0 56 chr1 252767050 252767122 -29426542 + MER63 DNA MER1_type 682 749 -312 2477 65 0 0 chr1 252767160 252767452 -29426212 + AluY SINE Alu 1 292 -19 604 161 136 8 chr1 252767613 252767731 -29425933 + FLAM_C SINE Alu 1 133 0 985 260 83 6 chr1 252767805 252768117 -29425547 - LTR16C LTR ERVL 0 491 156 995 155 0 30 chr1 252768289 252768457 -29425207 - FRAM SINE Alu 0 166 4 2124 102 11 3 chr1 252768478 252768785 -29424879 - AluSp SINE Alu 0 310 2 1875 140 7 0 chr1 252768818 252769090 -29424574 - AluSx SINE Alu -38 274 1 190 297 36 43 chr1 252769948 252770086 -29423578 - MIR3 SINE MIR -27 181 45 619 212 44 0 chr1 252770106 252770243 -29423421 - MER5A DNA MER1_type 0 189 47 184 277 46 0 chr1 252771004 252771069 -29422595 - L2 LINE L2 -213 3059 2992 229 221 44 0 chr1 252771956 252772024 -29421640 + L2 LINE L2 3237 3307 -6 2004 122 16 30 chr1 252772024 252772327 -29421337 + AluSx SINE Alu 1 299 -13 2132 79 69 0 chr1 252774497 252774774 -29418890 + AluY SINE Alu 1 296 -15 230 95 24 0 chr1 252774844 252774886 -29418778 + (TC)n Simple_repeat Simple_repeat 2 44 0 365 323 55 18 chr1 252775400 252775564 -29418100 + MIR SINE MIR 20 189 -73 1430 155 4 4 chr1 252775691 252775923 -29417741 + AluJo SINE Alu 63 294 -18 253 336 26 35 chr1 252776205 252776318 -29417346 + MIR SINE MIR 38 149 -113 697 197 86 35 chr1 252777704 252777790 -29415874 - MER3 DNA MER1_type -1 208 128 2371 92 0 19 chr1 252777790 252778107 -29415557 + AluSx SINE Alu 1 311 -1 697 197 86 35 chr1 252778107 252778218 -29415446 - MER3 DNA MER1_type -81 128 1 232 277 56 17 chr1 252779239 252779355 -29414309 - MIR SINE MIR -74 134 14 202 308 164 10 chr1 252780004 252780108 -29413556 - MER5B DNA MER1_type -4 174 55 14677 25 0 0 chr1 252780895 252783392 -29410272 + L1PA2 LINE L1 3657 6153 -2 25 0 0 0 chr1 252784024 252784049 -29409615 + AT_rich Low_complexity Low_complexity 1 25 0 2297 99 0 6 chr1 252784242 252784555 -29409109 + AluY SINE Alu 1 311 0 239 301 138 8 chr1 252785800 252785923 -29407741 - MIR3 SINE MIR -40 168 30 212 324 0 28 chr1 252787203 252787274 -29406390 + L2 LINE L2 2992 3060 -212 276 149 0 0 chr1 252788077 252788124 -29405540 + (CA)n Simple_repeat Simple_repeat 2 48 0 217 317 0 90 chr1 252788583 252788750 -29404914 - MIR SINE MIR -38 224 73 525 198 10 0 chr1 252790349 252790450 -29403214 + MER81 DNA DNA 3 104 -10 224 373 81 12 chr1 252791250 252791411 -29402253 - L2 LINE L2 -5 3267 3096 320 321 127 6 chr1 252791617 252791782 -29401882 + MIR SINE MIR 22 206 -56 620 231 97 94 chr1 252793332 252793692 -29399972 - L2 LINE L2 0 3313 2953 283 93 19 0 chr1 252794470 252794524 -29399140 + L1PB3 LINE L1 6097 6151 -3 25 31 0 0 chr1 252795501 252795533 -29398131 + AT_rich Low_complexity Low_complexity 1 32 0 483 18 0 0 chr1 252795726 252795782 -29397882 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 1580 212 56 5 chr1 252796445 252796836 -29396828 - MER63 DNA MER1_type -2 1058 648 1037 153 36 54 chr1 252796836 252796992 -29396672 + MER20B DNA MER1_type 1 153 -66 2148 152 25 0 chr1 252796992 252797347 -29396317 - THE1B LTR MaLR 0 364 1 1037 153 36 54 chr1 252797347 252797413 -29396251 + MER20B DNA MER1_type 153 219 0 338 173 120 0 chr1 252797413 252797488 -29396176 - MER63 DNA MER1_type -405 655 572 1683 61 0 0 chr1 252799200 252799398 -29394266 + AluY SINE Alu 1 198 -113 1573 176 61 3 chr1 252799438 252799767 -29393897 + L1MB5 LINE L1 5794 6141 -33 183 232 72 29 chr1 252799897 252799966 -29393698 + MIR3 SINE MIR 135 206 -2 313 318 40 23 chr1 252800072 252800248 -29393416 + L2 LINE L2 2839 3017 -255 2212 121 3 13 chr1 252800600 252800915 -29392749 + AluSp SINE Alu 1 312 -1 1162 87 0 22 chr1 252800915 252800967 -29392697 + (GAAA)n Simple_repeat Simple_repeat 1 230 0 1162 87 0 22 chr1 252800967 252801151 -29392513 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 324 313 211 0 chr1 252802042 252802208 -29391456 - MIR SINE MIR -14 248 48 223 311 40 40 chr1 252802212 252802286 -29391378 + MIR3 SINE MIR 92 165 -43 196 325 197 17 chr1 252805350 252805467 -29388197 - MIR SINE MIR -107 155 18 2331 58 7 3 chr1 252805710 252806002 -29387662 - AluY SINE Alu -18 293 1 881 304 80 17 chr1 252807303 252807767 -29385897 + MER20B DNA MER1_type 30 522 -261 415 295 54 79 chr1 252809610 252809888 -29383776 - HAL1b LINE L1 -989 359 89 1155 266 128 73 chr1 252810461 252811928 -29381736 - L1MEc LINE L1 -4340 2056 457 1268 85 149 5 chr1 252811928 252812129 -29381535 - MER30 DNA MER1_type 0 230 1 1155 266 128 73 chr1 252812129 252812575 -29381089 - L1MEc LINE L1 -5939 457 37 780 244 11 40 chr1 252813133 252813408 -29380256 + MER20B DNA MER1_type 517 783 0 309 370 92 0 chr1 252813408 252813527 -29380137 - L2 LINE L2 -4 3268 3139 204 337 10 20 chr1 252813531 252813629 -29380035 + L2 LINE L2 3216 3312 -1 2298 103 0 3 chr1 252814514 252814824 -29378840 + AluSg SINE Alu 1 309 -1 201 147 0 0 chr1 252815615 252815649 -29378015 + (A)n Simple_repeat Simple_repeat 1 34 0 362 322 194 14 chr1 252816108 252816319 -29377345 - MIR SINE MIR -8 254 6 245 94 0 19 chr1 252816613 252816666 -29376998 + L1MB3 LINE L1 6131 6182 -1 297 264 60 75 chr1 252816999 252817200 -29376464 - MLT1J LTR MaLR -199 312 115 1707 216 16 19 chr1 252817322 252817697 -29375967 - MLT1A2 LTR MaLR 0 374 1 1767 147 65 0 chr1 252818770 252819063 -29374601 - AluSx SINE Alu 0 312 1 352 296 28 0 chr1 252819067 252819175 -29374489 - MIR SINE MIR -58 204 94 24 53 0 0 chr1 252819482 252819520 -29374144 + AT_rich Low_complexity Low_complexity 1 38 0 999 234 18 0 chr1 252819632 252819850 -29373814 - MER58A DNA MER1_type 0 224 3 392 239 63 13 chr1 252820569 252820728 -29372936 + (TATATG)n Simple_repeat Simple_repeat 4 170 0 1094 167 20 0 chr1 252820728 252820932 -29372732 + MER2 DNA MER2_type 2 209 -136 234 259 0 0 chr1 252820959 252821013 -29372651 + MER2 DNA MER2_type 267 320 -25 206 186 0 23 chr1 252821026 252821069 -29372595 + (TA)n Simple_repeat Simple_repeat 1 42 0 26 0 0 0 chr1 252823784 252823810 -29369854 + AT_rich Low_complexity Low_complexity 1 26 0 237 221 118 0 chr1 252825345 252825413 -29368251 - MLT1K LTR MaLR 0 588 513 210 341 34 11 chr1 252825922 252826010 -29367654 + MIR SINE MIR 58 147 -61 314 264 66 0 chr1 252826039 252826145 -29367519 + L1ME2 LINE L1 5829 5941 -223 815 160 8 0 chr1 252826146 252826271 -29367393 + AluJo/FLAM SINE Alu 2 127 -175 272 157 20 0 chr1 252826226 252826277 -29367387 + FLAM SINE Alu 82 133 0 207 100 0 0 chr1 252826271 252826301 -29367363 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 764 260 13 38 chr1 252826301 252826536 -29367128 + L1ME2 LINE L1 5927 6155 -9 2233 120 0 0 chr1 252826611 252826910 -29366754 - AluSq SINE Alu -14 299 1 726 266 83 56 chr1 252827295 252827731 -29365933 - MLT1H1 LTR MaLR -1 554 120 861 220 21 25 chr1 252878753 252878989 -29314675 + L1MD3 LINE L1 7753 7987 -8 932 242 94 11 chr1 252879989 252880393 -29313271 - MER57A LTR ERV1 0 403 1 248 266 43 21 chr1 252880665 252880759 -29312905 - MLT1J LTR MaLR -341 170 75 1054 314 47 51 chr1 252880802 252881359 -29312305 + L2 LINE L2 1989 2545 -769 1788 194 55 71 chr1 252881359 252881869 -29311795 + MLT1D LTR MaLR 3 504 -1 1054 314 47 51 chr1 252881869 252881904 -29311760 + L2 LINE L2 2545 2579 -735 720 240 125 19 chr1 252881919 252882127 -29311537 + MIR SINE MIR 33 262 0 897 311 43 24 chr1 252882144 252882578 -29311086 + L2 LINE L2 2606 3052 -261 273 292 14 0 chr1 252882651 252882723 -29310941 + L2 LINE L2 3238 3310 -3 21 0 0 0 chr1 252883328 252883349 -29310315 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 252883890 252883913 -29309751 + (CAA)n Simple_repeat Simple_repeat 2 24 0 200 154 19 0 chr1 252884499 252884551 -29309113 + (TG)n Simple_repeat Simple_repeat 1 53 0 606 201 71 19 chr1 252885887 252886041 -29307623 + MER45 DNA AcHobo 25 186 -1395 4892 193 41 36 chr1 252886093 252886781 -29306883 + MER45R DNA AcHobo 350 1048 -533 2063 139 10 0 chr1 252886781 252887083 -29306581 + AluSq SINE Alu 1 305 -8 4892 193 41 36 chr1 252887083 252887620 -29306044 + MER45R DNA AcHobo 1048 1581 0 377 276 106 29 chr1 252887912 252888082 -29305582 - L1MEd LINE L1 -5574 545 363 209 218 36 36 chr1 252888393 252888448 -29305216 + MIR3 SINE MIR 115 169 -39 395 327 68 84 chr1 252888455 252888825 -29304839 - L2 LINE L2 -1 3271 2908 275 366 0 22 chr1 252890337 252890520 -29303144 + C-rich Low_complexity Low_complexity 1 179 0 365 148 16 0 chr1 252890730 252890791 -29302873 + AluSp SINE Alu 131 192 -111 352 203 0 0 chr1 252890781 252890850 -29302814 + AluS SINE Alu 225 293 -8 * 25 31 0 0 chr1 252891100 252891132 -29302532 + AT_rich Low_complexity Low_complexity 1 32 0 1272 196 16 79 chr1 252891246 252891644 -29302020 - LTR37A LTR ERV1 -7 419 48 1895 126 79 16 chr1 252891644 252891961 -29301703 - MER1B DNA MER1_type 0 337 1 1272 196 16 79 chr1 252891961 252891990 -29301674 - LTR37A LTR ERV1 -378 48 19 1855 176 46 51 chr1 252894088 252894520 -29299144 - MSTB1 LTR MaLR -2 430 1 227 114 23 0 chr1 252894583 252894627 -29299037 + (CAG)n Simple_repeat Simple_repeat 2 46 0 227 229 12 60 chr1 252894688 252894771 -29298893 + LTR33A LTR ERVL 420 498 -25 663 219 0 0 chr1 252894824 252894947 -29298717 + FLAM_C SINE Alu 3 125 -18 2362 142 12 26 chr1 252895074 252895504 -29298160 + Tigger2a DNA MER2_type 10 433 -1 996 288 128 20 chr1 252895564 252896061 -29297603 - L2 LINE L2 0 3313 2768 208 238 52 0 chr1 252897097 252897161 -29296503 + MIR SINE MIR 83 127 -81 252 312 0 13 chr1 252897396 252897473 -29296191 - MIR SINE MIR -106 156 81 205 345 58 22 chr1 252897488 252897627 -29296037 + MIR SINE MIR 1 144 -118 1842 54 50 13 chr1 252899009 252899299 -29294365 - AluY SINE Alu 0 332 34 195 42 0 0 chr1 252899775 252899799 -29293865 + (TTG)n Simple_repeat Simple_repeat 2 25 0 284 236 14 14 chr1 252901933 252902005 -29291659 + CT-rich Low_complexity Low_complexity 4 75 0 22 0 0 0 chr1 252902908 252902930 -29290734 + AT_rich Low_complexity Low_complexity 1 22 0 496 324 23 23 chr1 252903569 252903745 -29289919 - MIR3 SINE MIR -27 181 6 270 81 0 0 chr1 252903813 252903850 -29289814 + (CA)n Simple_repeat Simple_repeat 1 37 0 197 328 241 11 chr1 252904703 252904877 -29288787 + L3 LINE CR1 1345 1558 -19 307 220 85 51 chr1 252905198 252905316 -29288348 + MIR SINE MIR 137 258 -4 1041 261 186 28 chr1 252906709 252907210 -29286454 + MLT1E LTR MaLR 13 592 -1 355 259 31 80 chr1 252907233 252907395 -29286269 + MIR SINE MIR 63 216 -46 455 325 111 57 chr1 252907816 252908448 -29285216 - L2 LINE L2 -159 3113 2433 2028 119 10 17 chr1 252908733 252909035 -29284629 + AluSx SINE Alu 9 308 -4 540 321 85 28 chr1 252909464 252909863 -29283801 + L1MEc LINE L1 55 476 -5920 375 355 22 22 chr1 252909894 252910125 -29283539 + L1MEc LINE L1 539 769 -5627 1366 86 0 0 chr1 252910127 252910301 -29283363 - AluY SINE Alu -11 300 127 183 42 0 0 chr1 252913950 252913974 -29279690 + (CAT)n Simple_repeat Simple_repeat 2 25 0 1139 73 0 0 chr1 252915624 252915760 -29277904 - AluY SINE Alu -175 136 1 489 265 64 1 chr1 252915764 252915994 -29277670 + L1M4 LINE L1 1331 1751 -5353 747 294 90 40 chr1 252916002 252916522 -29277142 + L1M4 LINE L1 4001 4546 -2411 189 0 0 0 chr1 252918230 252918251 -29275413 + (A)n Simple_repeat Simple_repeat 1 21 0 1804 165 13 25 chr1 252919500 252919815 -29273849 + AluJb SINE Alu 1 311 -1 295 91 55 0 chr1 252919817 252919872 -29273792 + GA-rich Low_complexity Low_complexity 3 60 0 185 316 25 13 chr1 252919891 252919970 -29273694 - MIR SINE MIR -101 107 28 5161 137 23 76 chr1 252920833 252921652 -29272012 - L1MC3 LINE L1 0 7785 7041 186 43 0 0 chr1 252921652 252921675 -29271989 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 5161 137 23 76 chr1 252921675 252921985 -29271679 - L1MC3 LINE L1 -744 7041 6716 292 230 0 0 chr1 252921985 252922059 -29271605 + L1MA8 LINE L1 5097 5170 -976 247 200 0 0 chr1 252922059 252922099 -29271565 + Alu SINE Alu 1 40 -261 429 164 0 0 chr1 252922099 252922160 -29271504 + AluJb SINE Alu 208 268 -44 267 31 0 0 chr1 252922160 252922192 -29271472 + (GGAA)n Simple_repeat Simple_repeat 4 35 0 5806 127 19 15 chr1 252922194 252923315 -29270349 + L1MA8 LINE L1 5159 6283 -8 912 278 95 61 chr1 252923496 252924011 -29269653 - L2 LINE L2 -15 3298 2754 25 0 0 0 chr1 252924086 252924111 -29269553 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr1 252924154 252924177 -29269487 + (CA)n Simple_repeat Simple_repeat 2 24 0 396 331 67 6 chr1 252924844 252925022 -29268642 + MIR SINE MIR 60 248 -14 214 316 86 34 chr1 252925052 252925169 -29268495 + L2 LINE L2 3191 3313 0 3241 18 0 3 chr1 252926145 252926536 -29267128 - L1PA3 LINE L1 -149 6006 5617 234 128 0 0 chr1 252926853 252926892 -29266772 + (GGGAGA)n Simple_repeat Simple_repeat 5 43 0 2211 121 0 3 chr1 252927757 252928064 -29265600 + AluSg SINE Alu 1 306 -4 236 259 70 7 chr1 252928409 252928552 -29265112 - L1ME4a LINE L1 -18 6103 5952 2186 149 22 0 chr1 252928619 252928975 -29264689 - THE1B LTR MaLR 0 364 1 28 48 0 0 chr1 252929112 252929154 -29264510 + AT_rich Low_complexity Low_complexity 1 42 0 330 266 39 102 chr1 252929441 252929569 -29264095 + MER91B DNA MER1_type 1 120 -70 328 185 62 0 chr1 252929569 252929634 -29264030 + MER91B DNA MER1_type 90 158 -32 1086 30 0 148 chr1 252929675 252929844 -29263820 - AluY SINE Alu -10 301 158 866 195 116 20 chr1 252933545 252933796 -29259868 - MER33 DNA MER1_type -49 275 1 485 305 46 67 chr1 252933820 252933944 -29259720 - MIR SINE MIR -6 256 138 363 244 39 16 chr1 252933944 252934071 -29259593 + MER94 DNA DNA 5 134 0 485 305 46 67 chr1 252934071 252934185 -29259479 - MIR SINE MIR -124 138 23 199 53 26 26 chr1 252934294 252934332 -29259332 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 1375 241 46 23 chr1 252934630 252935025 -29258639 - MER21B LTR ERV1 -54 809 406 534 158 0 0 chr1 252935066 252935148 -29258516 - MER21B LTR ERV1 -765 98 17 873 238 27 40 chr1 252935409 252935632 -29258032 - MIR SINE MIR -6 256 37 548 233 16 0 chr1 252937485 252937614 -29256050 - MER3 DNA MER1_type -60 149 19 377 321 67 45 chr1 252937986 252938142 -29255522 - MIR SINE MIR -6 256 92 487 234 56 9 chr1 252938142 252938249 -29255415 + MER81 DNA DNA 1 112 -2 377 321 67 45 chr1 252938249 252938316 -29255348 - MIR SINE MIR -170 92 28 2508 45 0 69 chr1 252938374 252938708 -29254956 - AluY SINE Alu 0 311 1 732 258 0 0 chr1 252939133 252939292 -29254372 + MER5A DNA MER1_type 31 189 0 677 210 11 61 chr1 252939305 252939426 -29254238 + MER5B DNA MER1_type 1 112 -66 2382 83 3 0 chr1 252939426 252939726 -29253938 - AluSg SINE Alu -9 301 1 677 210 11 61 chr1 252939726 252939785 -29253879 + MER5B DNA MER1_type 112 172 -6 514 298 139 8 chr1 252940676 252940775 -29252889 - Charlie8 DNA MER1_type -70 271 186 216 0 0 0 chr1 252940775 252940799 -29252865 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 514 298 139 8 chr1 252940799 252940937 -29252727 - Charlie8 DNA MER1_type -155 186 3 185 351 182 4 chr1 252940943 252941168 -29252496 - L3 LINE CR1 -193 1384 1120 376 322 40 13 chr1 252942197 252942346 -29251318 + MIR SINE MIR 52 204 -58 21 0 0 0 chr1 252942381 252942402 -29251262 + AT_rich Low_complexity Low_complexity 1 21 0 218 200 21 21 chr1 252942468 252942563 -29251101 + GA-rich Low_complexity Low_complexity 3 97 0 190 250 159 45 chr1 252942962 252943050 -29250614 - MIR SINE MIR -109 153 56 187 163 82 82 chr1 252943153 252943202 -29250462 + L3b LINE CR1 1379 1427 -156 876 261 150 28 chr1 252943400 252944102 -29249562 - L2 LINE L2 -2 3311 2517 428 301 37 0 chr1 252944100 252944236 -29249428 + MIR SINE MIR 71 211 -51 * 2340 93 0 7 chr1 252944939 252945249 -29248415 - AluSc SINE Alu -1 308 1 1905 153 0 0 chr1 252946033 252946321 -29247343 + AluSx SINE Alu 1 288 -24 458 80 98 0 chr1 252946324 252946487 -29247177 + (TA)n Simple_repeat Simple_repeat 2 180 0 506 264 16 62 chr1 252946497 252946690 -29246974 + MLT1F1 LTR MaLR 2 185 -357 384 97 0 0 chr1 252946691 252946753 -29246911 + (TC)n Simple_repeat Simple_repeat 2 63 0 1146 202 83 54 chr1 252946794 252946865 -29246799 + MLT1F1 LTR MaLR 215 282 -285 2306 90 0 0 chr1 252946865 252947166 -29246498 + AluY SINE Alu 1 301 -10 1146 202 83 54 chr1 252947166 252947430 -29246234 + MLT1F1 LTR MaLR 282 560 -7 1211 256 77 43 chr1 252947947 252947981 -29245683 + L1ME3A LINE L1 4895 4926 -1244 3745 60 2 0 chr1 252947981 252948449 -29245215 + L1PA7 LINE L1 5678 6146 -8 1211 256 77 43 chr1 252948449 252949358 -29244306 + L1ME3A LINE L1 4926 5868 -302 3942 244 69 18 chr1 252949523 252950998 -29242666 + L1ME1 LINE L1 3826 5376 -770 1675 225 60 29 chr1 252950995 252951516 -29242148 + L1ME1 LINE L1 5625 6161 -5 * 961 230 10 0 chr1 252952090 252952319 -29241345 + AluJo SINE Alu 87 317 0 31 26 0 0 chr1 252953094 252953132 -29240532 + AT_rich Low_complexity Low_complexity 1 38 0 181 300 100 0 chr1 252953874 252953897 -29239767 - L2 LINE L2 -12 3260 3241 3649 213 25 47 chr1 252953897 252954888 -29238776 - LTR5 LTR ERVK 0 969 1 181 300 100 0 chr1 252954888 252954924 -29238740 - L2 LINE L2 -31 3241 3195 363 162 29 0 chr1 252954942 252955010 -29238654 + MER5A DNA MER1_type 27 96 -93 379 267 87 20 chr1 252955028 252955178 -29238486 - MIR SINE MIR -54 208 49 212 330 27 54 chr1 252955224 252955336 -29238328 + MIR SINE MIR 29 137 -71 247 268 174 31 chr1 252956809 252957033 -29236631 + L2 LINE L2 2697 2952 -362 25 31 0 0 chr1 252957079 252957111 -29236553 + AT_rich Low_complexity Low_complexity 1 32 0 5911 34 1 0 chr1 252957111 252957848 -29235816 + L1P LINE L1 3725 4462 -1684 307 304 52 52 chr1 252957848 252957963 -29235701 - MER5A DNA MER1_type -38 151 37 180 338 39 26 chr1 252957972 252958049 -29235615 + L2 LINE L2 3149 3226 -46 1210 142 0 7 chr1 252958321 252958638 -29235026 + MLT1A1 LTR MaLR 1 352 -13 23 0 0 0 chr1 252959339 252959362 -29234302 + AT_rich Low_complexity Low_complexity 1 23 0 263 279 139 30 chr1 252960047 252960248 -29233416 + L3 LINE CR1 627 849 -728 367 293 83 33 chr1 252960279 252960460 -29233204 + L3 LINE CR1 1077 1266 -311 215 280 20 0 chr1 252960511 252960561 -29233103 + L3 LINE CR1 1524 1574 -3 400 373 44 44 chr1 252961725 252962090 -29231574 + L3b LINE CR1 1134 1498 -85 337 361 25 8 chr1 252962136 252962258 -29231406 - L3b LINE CR1 -89 1494 1371 230 286 111 41 chr1 252963455 252963626 -29230038 + MIR3 SINE MIR 2 184 -24 1172 181 4 0 chr1 252964161 252964399 -29229265 + L1MD3 LINE L1 7750 7988 -7 993 213 27 18 chr1 252966996 252967217 -29226447 + MER58A DNA MER1_type 2 224 0 182 344 57 21 chr1 252968529 252968701 -29224963 + MIR SINE MIR 38 216 -46 392 276 122 86 chr1 252968792 252969013 -29224651 + MIR SINE MIR 34 262 0 182 256 23 0 chr1 252969191 252969234 -29224430 + L2 LINE L2 3263 3306 -7 362 318 57 56 chr1 252969342 252969699 -29223965 - L2 LINE L2 -194 3078 2716 2148 131 3 6 chr1 252970362 252970674 -29222990 + AluSx SINE Alu 1 311 -1 1455 179 10 73 chr1 252971564 252971877 -29221787 + AluJo SINE Alu 1 293 -19 1190 163 36 45 chr1 252972909 252973130 -29220534 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 252973250 252973271 -29220393 + AT_rich Low_complexity Low_complexity 1 21 0 316 301 39 10 chr1 252974870 252974973 -29218691 + L1MC/D LINE L1 5574 5679 -2129 17238 153 14 5 chr1 252975689 252976835 -29216829 + L1MA3 LINE L1 880 2015 -5550 2302 104 0 0 chr1 252976835 252977132 -29216532 - AluSx SINE Alu -15 297 1 17238 153 14 5 chr1 252977132 252981864 -29211800 + L1MA3 LINE L1 2015 6822 -743 2241 107 11 16 chr1 252981873 252982237 -29211427 + L1MA3 LINE L1 7074 7435 -289 312 298 47 78 chr1 252982262 252982389 -29211275 - L2 LINE L2 -99 3214 3097 2239 101 3 7 chr1 252982389 252982687 -29210977 + AluSg SINE Alu 2 298 -12 312 298 47 78 chr1 252982687 252982814 -29210850 - L2 LINE L2 -216 3097 2968 419 40 0 0 chr1 252982989 252983039 -29210625 + (CA)n Simple_repeat Simple_repeat 1 50 0 1180 238 15 72 chr1 252983583 252984053 -29209611 - L1ME1 LINE L1 -9 6157 5715 379 244 0 24 chr1 252984121 252984244 -29209420 - L1MC5 LINE L1 -800 7161 7042 501 304 37 0 chr1 252984475 252984610 -29209054 + L2 LINE L2 3128 3267 -5 930 57 34 17 chr1 252984925 252985100 -29208564 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 404 323 151 5 chr1 252985293 252985479 -29208185 + MIR SINE MIR 23 235 -27 428 325 103 7 chr1 252985535 252985766 -29207898 + MIR SINE MIR 3 252 -10 378 314 48 27 chr1 252987261 252987449 -29206215 - MIR SINE MIR -50 212 21 255 204 0 0 chr1 252988017 252988071 -29205593 + (TA)n Simple_repeat Simple_repeat 2 55 0 3792 96 23 0 chr1 252988764 252989324 -29204340 - L1MA2 LINE L1 0 6304 5732 476 32 16 0 chr1 252990744 252990806 -29202858 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 246 105 0 0 chr1 252991117 252991155 -29202509 + (TTG)n Simple_repeat Simple_repeat 2 39 0 295 215 44 7 chr1 252991470 252991576 -29202088 + MLT1J2 LTR MaLR 67 218 -293 2256 113 0 0 chr1 252993244 252993537 -29200127 + AluSx SINE Alu 1 293 -19 243 88 0 0 chr1 252994731 252994765 -29198899 + (T)n Simple_repeat Simple_repeat 1 34 0 304 236 200 0 chr1 252995855 252995965 -29197699 - MIR3 SINE MIR -38 170 39 282 95 0 0 chr1 252997906 252997948 -29195716 + 5S rRNA rRNA 1 42 -79 491 227 16 62 chr1 252998607 252998735 -29194929 + MER5A DNA MER1_type 46 167 -22 740 292 23 39 chr1 252998782 252999039 -29194625 - MIR SINE MIR -6 256 4 249 377 123 0 chr1 252999063 252999177 -29194487 + L2 LINE L2 3137 3264 -8 503 70 0 81 chr1 252999183 252999235 -29194429 - MADE1 DNA Mariner 0 80 36 2111 92 0 25 chr1 252999235 252999516 -29194148 + AluSc SINE Alu 30 303 -6 503 70 0 81 chr1 252999516 252999549 -29194115 - MADE1 DNA Mariner -44 36 2 307 70 0 0 chr1 252999597 252999640 -29194024 + MADE1 DNA Mariner 1 43 -37 186 176 0 0 chr1 253000385 253000436 -29193228 + (TA)n Simple_repeat Simple_repeat 2 52 0 365 324 14 14 chr1 253002134 253002273 -29191391 - MIR SINE MIR -61 201 63 540 270 36 122 chr1 253002571 253002685 -29190979 + MIR SINE MIR 6 128 -134 1729 147 35 21 chr1 253002685 253003065 -29190599 - AluSx SINE Alu 0 384 1 540 270 36 122 chr1 253003065 253003226 -29190438 + MIR SINE MIR 128 259 -3 23 0 0 0 chr1 253003241 253003264 -29190400 + AT_rich Low_complexity Low_complexity 1 23 0 216 97 0 0 chr1 253003816 253003847 -29189817 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 364 271 163 36 chr1 253003879 253004100 -29189564 - L2 LINE L2 -76 3237 2989 181 246 33 16 chr1 253004194 253004255 -29189409 - L2 LINE L2 -485 2829 2768 299 278 159 33 chr1 253004446 253004597 -29189067 + MIR3 SINE MIR 18 187 -21 373 312 35 11 chr1 253004667 253004828 -29188836 + MIR SINE MIR 17 184 -66 473 295 45 0 chr1 253005776 253005888 -29187776 + MIR SINE MIR 31 147 -115 2058 104 10 62 chr1 253006686 253006995 -29186669 - AluSx SINE Alu -19 293 1 762 294 26 0 chr1 253008070 253008264 -29185400 + MIR SINE MIR 31 229 -33 220 143 36 18 chr1 253008321 253008377 -29185287 + GA-rich Low_complexity Low_complexity 4 60 0 1184 171 125 117 chr1 253008514 253008594 -29185070 - MSTD LTR MaLR 0 396 318 1861 151 14 7 chr1 253008594 253008878 -29184786 - AluJb SINE Alu -26 286 1 1184 171 125 117 chr1 253008878 253009190 -29184474 - MSTD LTR MaLR -78 318 1 236 328 43 17 chr1 253009231 253009347 -29184317 - MIR3 SINE MIR -45 163 45 561 365 79 17 chr1 253009831 253010184 -29183480 + L2 LINE L2 2599 2973 -341 189 0 0 0 chr1 253010213 253010234 -29183430 + (CA)n Simple_repeat Simple_repeat 2 22 0 193 204 23 0 chr1 253010437 253010481 -29183183 + L2 LINE L2 3267 3311 -2 530 290 42 42 chr1 253010513 253010706 -29182958 + L2 LINE L2 3107 3299 -14 198 103 0 0 chr1 253010707 253010736 -29182928 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 194 352 0 0 chr1 253010739 253010793 -29182871 + L2 LINE L2 3201 3254 -18 280 308 96 27 chr1 253012706 253012852 -29180812 + MIR SINE MIR 11 142 -66 2533 163 24 6 chr1 253012900 253013398 -29180266 + L1MB4 LINE L1 5636 6142 -38 26 30 0 0 chr1 253013458 253013491 -29180173 + AT_rich Low_complexity Low_complexity 1 33 0 529 40 0 26 chr1 253013527 253013603 -29180061 - L1PA6 LINE L1 0 6154 6081 1548 103 0 21 chr1 253014134 253014368 -29179296 - Charlie3 DNA MER1_type -8 2702 2474 1886 175 3 6 chr1 253014371 253014709 -29178955 + L1MC1 LINE L1 5981 6317 -16 1632 224 17 22 chr1 253014754 253015170 -29178494 + MLT1C LTR MaLR 53 466 -1 299 355 11 51 chr1 253015203 253015479 -29178185 + L2 LINE L2 2835 3099 -173 203 348 67 11 chr1 253015485 253015574 -29178090 + L2 LINE L2 3215 3308 -5 190 43 0 0 chr1 253015940 253015963 -29177701 + MIR SINE MIR 124 146 -62 1395 209 30 25 chr1 253016375 253016738 -29176926 - MLT1A1 LTR MaLR 0 365 1 180 151 38 19 chr1 253017595 253017648 -29176016 + (TA)n Simple_repeat Simple_repeat 1 54 0 535 240 40 20 chr1 253019111 253019261 -29174403 + LTR40b LTR ERVL 5 157 -305 1082 193 34 4 chr1 253019293 253019558 -29174106 - L1MA4 LINE L1 -4 6296 6024 1319 253 9 0 chr1 253019607 253019935 -29173729 - L1ME1 LINE L1 -7 6159 5829 2751 143 16 0 chr1 253020093 253020584 -29173080 - L1PB4 LINE L1 -326 5830 5332 689 217 0 0 chr1 253021908 253022023 -29171641 + FLAM_A SINE Alu 1 115 -18 32 43 0 0 chr1 253022023 253022069 -29171595 + AT_rich Low_complexity Low_complexity 1 46 0 210 238 0 0 chr1 253022239 253022281 -29171383 + GA-rich Low_complexity Low_complexity 2 43 0 504 269 160 45 chr1 253022319 253022587 -29171077 + L3 LINE CR1 920 1218 -359 470 232 47 10 chr1 253023072 253023219 -29170445 - MLT1J2 LTR MaLR -188 258 106 1976 141 0 20 chr1 253023497 253023801 -29169863 - AluJo SINE Alu -14 298 1 306 289 144 43 chr1 253025034 253025221 -29168443 - MIR SINE MIR -7 255 50 1004 84 0 0 chr1 253025906 253026049 -29167615 + L1MB1 LINE L1 6026 6168 0 1495 184 14 34 chr1 253026471 253026765 -29166899 + AluJo SINE Alu 1 288 -24 754 226 13 84 chr1 253027088 253027314 -29166350 - MER63A DNA MER1_type 0 210 1 505 277 26 13 chr1 253027369 253027524 -29166140 + MIR SINE MIR 81 237 -25 1026 222 0 0 chr1 253027898 253028087 -29165577 - MER5A DNA MER1_type 0 189 1 1094 299 57 33 chr1 253028229 253028720 -29164944 - MLT1H LTR MaLR -28 521 19 1629 216 0 3 chr1 253030765 253031062 -29162602 + AluJo SINE Alu 1 296 -16 2021 163 0 0 chr1 253031100 253031407 -29162257 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr1 253032088 253032113 -29161551 + AT_rich Low_complexity Low_complexity 1 25 0 570 139 10 0 chr1 253032366 253032467 -29161197 + MER103 DNA DNA 10 111 -55 730 305 165 10 chr1 253032874 253033281 -29160383 - L2 LINE L2 0 3313 2844 252 143 0 0 chr1 253033357 253033399 -29160265 + (ATG)n Simple_repeat Simple_repeat 1 42 0 315 0 0 0 chr1 253033428 253033463 -29160201 + (TC)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr1 253033462 253033486 -29160178 + (CG)n Simple_repeat Simple_repeat 1 24 0 * 2285 114 0 0 chr1 253033486 253033783 -29159881 - AluSx SINE Alu -3 309 13 461 287 132 19 chr1 253034020 253034278 -29159386 - MLT1J2 LTR MaLR -147 303 17 207 219 0 0 chr1 253034711 253034752 -29158912 - L2 LINE L2 -3 3269 3229 366 237 153 38 chr1 253035011 253035142 -29158522 + MIR SINE MIR 79 224 -38 752 176 0 0 chr1 253035607 253035732 -29157932 + AluJb SINE Alu 1 125 -187 24 32 0 0 chr1 253035732 253035763 -29157901 + AT_rich Low_complexity Low_complexity 1 31 0 706 325 113 52 chr1 253037854 253038444 -29155220 + L2 LINE L2 2066 2618 -654 315 0 0 0 chr1 253038444 253038479 -29155185 + (CA)n Simple_repeat Simple_repeat 1 35 0 706 325 113 52 chr1 253038479 253039040 -29154624 + L2 LINE L2 2618 3272 0 13202 115 30 22 chr1 253039225 253041033 -29152631 + Tigger1 DNA MER2_type 1 1829 -589 6665 83 8 0 chr1 253041033 253042151 -29151513 + L1PA11 LINE L1 5048 6173 -1 13202 115 30 22 chr1 253042151 253042540 -29151124 + Tigger1 DNA MER2_type 1829 2214 -204 6388 60 3 7 chr1 253042543 253043410 -29150254 - L1PA7 LINE L1 -11 6143 5280 843 191 57 14 chr1 253043410 253043620 -29150044 + Tigger1 DNA MER2_type 2194 2412 -6 233 246 15 15 chr1 253043655 253043720 -29149944 + L2 LINE L2 2688 2752 -562 217 202 24 119 chr1 253045016 253045100 -29148564 + MIR SINE MIR 102 177 -85 1078 356 85 25 chr1 253045294 253045916 -29147748 + MLT2F LTR ERVL 3 626 -2 2575 53 0 0 chr1 253046525 253046829 -29146835 - AluY SINE Alu -7 304 1 400 198 22 11 chr1 253046921 253047012 -29146652 + MLT1A1 LTR MaLR 1 92 -273 23 33 0 0 chr1 253047731 253047761 -29145903 + AT_rich Low_complexity Low_complexity 1 30 0 201 318 15 15 chr1 253048097 253048163 -29145501 + MIR3 SINE MIR 126 191 -17 24 53 0 0 chr1 253048473 253048511 -29145153 + AT_rich Low_complexity Low_complexity 1 38 0 2411 210 37 17 chr1 253050955 253051880 -29141784 - MER63D DNA MER1_type 0 1061 52 282 29 0 0 chr1 253052054 253052089 -29141575 + (TG)n Simple_repeat Simple_repeat 2 36 0 2179 175 5 22 chr1 253052093 253052494 -29141170 + MSTD LTR MaLR 2 395 -1 21 0 0 0 chr1 253052604 253052625 -29141039 + AT_rich Low_complexity Low_complexity 1 21 0 6139 221 48 26 chr1 253053689 253055892 -29137772 + L1MDa LINE L1 1 2490 -4050 1970 135 22 21 chr1 253055861 253056587 -29137077 + L1PB4 LINE L1 5371 6545 -5 * 1970 136 7 0 chr1 253056587 253056893 -29136771 + L1PB4 LINE L1 5845 6155 -1 429 131 0 65 chr1 253056903 253057010 -29136654 + L1MDa LINE L1 2479 2578 -3962 412 211 25 68 chr1 253057117 253057278 -29136386 + L1MDa LINE L1 2577 2730 -3991 1402 144 74 35 chr1 253057278 253057562 -29136102 - MER44D DNA MER2_type -1 608 44 752 283 27 17 chr1 253057588 253057897 -29135767 + L1MDa LINE L1 2688 2992 -3548 863 175 45 40 chr1 253057903 253058103 -29135561 + MLT1B LTR MaLR 1 201 -189 342 0 0 0 chr1 253058162 253058200 -29135464 + (TG)n Simple_repeat Simple_repeat 1 38 0 2668 159 62 21 chr1 253058243 253058999 -29134665 + MER21A LTR ERV1 20 928 -3 978 178 0 0 chr1 253059004 253059178 -29134486 + MLT1B LTR MaLR 214 387 -3 742 195 162 4 chr1 253059180 253059421 -29134243 + L1MDa LINE L1 3014 3292 -3248 4385 202 18 47 chr1 253059434 253060418 -29133246 + L1M2c LINE L1 65 1019 -5770 2132 125 3 3 chr1 253060418 253060722 -29132942 + AluSc SINE Alu 6 309 0 4385 202 18 47 chr1 253060722 253060757 -29132907 + L1M2c LINE L1 1019 1054 -5735 764 166 7 0 chr1 253060865 253061016 -29132648 + L1M2c LINE L1 2831 2982 -3806 14643 61 3 3 chr1 253061037 253063706 -29129958 - L1PA6 LINE L1 -7 6147 3475 219 36 0 0 chr1 253063813 253063841 -29129823 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 862 143 14 110 chr1 253063872 253064081 -29129583 - MER5A DNA MER1_type 0 189 1 4175 112 13 11 chr1 253064194 253064828 -29128836 + MER41B LTR ERV1 1 635 0 789 188 65 7 chr1 253066162 253066316 -29127348 + FAM SINE Alu 1 163 -12 828 255 160 34 chr1 253066704 253067085 -29126579 - LTR16A LTR ERVL -6 444 16 537 308 142 9 chr1 253067307 253067632 -29126032 - LTR33 LTR ERVL -153 368 1 1150 177 71 9 chr1 253068991 253069217 -29124447 + AluJb SINE Alu 73 312 0 492 358 83 24 chr1 253069219 253069941 -29123723 + L1MC/D LINE L1 2286 3014 -3201 636 199 44 22 chr1 253070046 253070182 -29123482 - FLAM_C SINE Alu -2 141 3 26 64 0 0 chr1 253070239 253070286 -29123378 + AT_rich Low_complexity Low_complexity 1 47 0 240 306 73 24 chr1 253070650 253070716 -29122948 + L1MC/D LINE L1 3691 3752 -2463 2512 71 0 0 chr1 253070716 253071027 -29122637 + AluY SINE Alu 1 311 0 240 306 73 24 chr1 253071027 253071166 -29122498 + L1MC/D LINE L1 3752 3906 -2309 1992 247 114 51 chr1 253071168 253071869 -29121795 + L2 LINE L2 821 1565 -1749 185 189 0 0 chr1 253071881 253071918 -29121746 + L2 LINE L2 1794 1830 -1484 310 243 37 22 chr1 253071936 253072072 -29121592 - L1MC4 LINE L1 0 8042 7905 622 222 82 5 chr1 253072128 253072335 -29121329 - L1MC4 LINE L1 -130 7912 7690 234 167 0 62 chr1 253072353 253072401 -29121263 + (ATGGTG)n Simple_repeat Simple_repeat 1 45 0 265 208 0 0 chr1 253072405 253072453 -29121211 - L1MC4 LINE L1 -364 7678 7631 1193 236 190 27 chr1 253072453 253072864 -29120800 + L2 LINE L2 1819 2296 -1018 297 202 28 46 chr1 253072875 253072984 -29120680 - MER67C LTR ERV1 -603 107 1 256 308 103 20 chr1 253072987 253073279 -29120385 + L1MC/D LINE L1 4589 4904 -1311 240 246 64 18 chr1 253073328 253073438 -29120226 + L1P LINE L1 4901 5015 -1131 385 286 183 27 chr1 253073630 253073854 -29119810 + L1MC/D LINE L1 5373 5631 -2223 309 296 38 45 chr1 253076024 253076156 -29117508 - L2 LINE L2 0 3272 3142 212 204 0 41 chr1 253076797 253076846 -29116818 + GA-rich Low_complexity Low_complexity 1 47 0 393 267 41 127 chr1 253076859 253077011 -29116653 - MIR SINE MIR -48 214 85 2512 65 3 0 chr1 253077011 253077319 -29116345 + AluY SINE Alu 1 309 -2 393 267 41 127 chr1 253077319 253077387 -29116277 - MIR SINE MIR -177 85 13 244 270 195 11 chr1 253077466 253077640 -29116024 - MIR SINE MIR -19 243 38 192 261 14 72 chr1 253077607 253077676 -29115988 - MIR3 SINE MIR -136 72 8 * 330 248 145 0 chr1 253077885 253078002 -29115662 + MIR SINE MIR 65 198 -64 1677 178 3 46 chr1 253078158 253078484 -29115180 - AluJo SINE Alu 0 312 1 26 50 0 0 chr1 253080448 253080488 -29113176 + AT_rich Low_complexity Low_complexity 1 40 0 2221 122 0 3 chr1 253080822 253081125 -29112539 + AluSg SINE Alu 1 302 -8 180 0 0 0 chr1 253081128 253081148 -29112516 + (T)n Simple_repeat Simple_repeat 1 20 0 363 44 0 0 chr1 253081446 253081491 -29112173 + (CA)n Simple_repeat Simple_repeat 2 46 0 396 288 18 68 chr1 253081792 253081955 -29111709 - MIR SINE MIR -3 259 105 210 71 0 0 chr1 253082657 253082685 -29110979 + (A)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr1 253083144 253083173 -29110491 + AT_rich Low_complexity Low_complexity 1 29 0 441 240 56 8 chr1 253083205 253083330 -29110334 + MER63 DNA MER1_type 2 758 -304 1504 181 29 18 chr1 253083495 253083741 -29109923 - MER44D DNA MER2_type -1882 605 482 2467 42 26 3 chr1 253083741 253084048 -29109616 - AluYb8 SINE Alu -4 314 1 1504 181 29 18 chr1 253084048 253084077 -29109587 - MER44D DNA MER2_type -2005 482 455 1040 207 59 0 chr1 253084074 253084277 -29109387 - MER44D DNA MER2_type -489 216 2 * 1748 176 0 10 chr1 253084483 253084779 -29108885 - AluJb SINE Alu -19 293 1 386 307 27 13 chr1 253085594 253085744 -29107920 + MARNA DNA Mariner 80 231 -355 384 40 0 0 chr1 253085844 253085894 -29107770 + (CA)n Simple_repeat Simple_repeat 2 51 0 218 318 250 8 chr1 253086202 253086334 -29107330 + L2 LINE L2 2867 3030 -283 264 298 155 11 chr1 253086439 253086620 -29107044 + L2 LINE L2 3107 3313 0 1988 141 3 10 chr1 253086822 253087113 -29106551 - AluSc SINE Alu -20 289 1 675 189 72 27 chr1 253088073 253088295 -29105369 + L1ME1 LINE L1 4218 4449 -1697 4071 203 57 40 chr1 253088427 253089620 -29104044 + L1ME1 LINE L1 4384 5612 -554 2602 46 0 3 chr1 253089620 253089926 -29103738 + AluY SINE Alu 1 305 -6 4071 203 57 40 chr1 253089926 253090487 -29103177 + L1ME1 LINE L1 5612 6162 -4 2785 133 16 16 chr1 253091065 253091493 -29102171 + MSTA LTR MaLR 1 428 0 246 81 0 0 chr1 253092311 253092348 -29101316 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 251 318 0 0 chr1 253092797 253092860 -29100804 + MER5A DNA MER1_type 8 70 -119 575 168 136 0 chr1 253092865 253092990 -29100674 + FRAM SINE Alu 35 176 0 579 169 0 21 chr1 253092990 253093132 -29100532 + GA-rich Low_complexity Low_complexity 1 139 0 266 148 0 50 chr1 253093201 253093302 -29100362 + (GAAA)n Simple_repeat Simple_repeat 3 98 0 218 203 0 16 chr1 253093288 253093352 -29100312 + GA-rich Low_complexity Low_complexity 3 65 0 * 272 255 245 0 chr1 253093359 253093457 -29100207 + MER5A DNA MER1_type 68 189 0 37 23 0 0 chr1 253093859 253093903 -29099761 + AT_rich Low_complexity Low_complexity 1 44 0 477 270 34 20 chr1 253095079 253095227 -29098437 - MIR SINE MIR 0 262 113 303 321 163 17 chr1 253095247 253095487 -29098177 - L2 LINE L2 -20 3293 3019 577 153 12 0 chr1 253095712 253095797 -29097867 + 5S rRNA rRNA 1 86 -35 494 279 123 5 chr1 253095863 253096067 -29097597 - MIR SINE MIR -16 246 19 573 309 78 19 chr1 253096099 253096368 -29097296 - Charlie8 DNA MER1_type -2132 285 1 5692 54 7 12 chr1 253096432 253097118 -29096546 + L1PA8 LINE L1 5490 6172 0 978 140 5 59 chr1 253097539 253097725 -29095939 + FRAM SINE Alu 1 172 -4 182 370 66 22 chr1 253097731 253097958 -29095706 - L2 LINE L2 -648 2666 2430 2183 102 0 0 chr1 253098288 253098563 -29095101 + AluSx SINE Alu 6 280 -32 218 32 32 0 chr1 253098565 253098596 -29095068 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 267 330 31 54 chr1 253098671 253098839 -29094825 + MIR SINE MIR 14 177 -31 15298 173 19 10 chr1 253099515 253103819 -29089845 + L1PB1 LINE L1 2524 6866 -1 331 332 45 45 chr1 253103912 253104114 -29089550 + L2 LINE L2 2808 3009 -263 * 406 281 31 8 chr1 253104110 253104238 -29089426 + MIR SINE MIR 124 254 -8 237 65 0 0 chr1 253104369 253104400 -29089264 + (TAA)n Simple_repeat Simple_repeat 3 33 0 418 286 97 9 chr1 253104403 253104620 -29089044 - MIR SINE MIR -8 254 19 217 314 19 51 chr1 253104639 253104795 -29088869 + L2 LINE L2 3159 3309 -4 215 239 0 0 chr1 253105372 253105418 -29088246 + L2 LINE L2 3266 3311 -2 2436 52 0 39 chr1 253105599 253105908 -29087756 - AluY SINE Alu -14 297 1 1601 194 31 9 chr1 253106242 253106566 -29087098 + LTR53 LTR ERVL 189 519 0 1299 124 21 0 chr1 253106697 253106891 -29086773 + Tigger1 DNA MER2_type 1105 1302 -1116 528 233 51 91 chr1 253107294 253107590 -29086074 + HAL1 LINE L1 1133 1416 -1091 779 302 7 17 chr1 253107596 253107897 -29085767 + HAL1 LINE L1 1791 2088 -419 388 285 6 101 chr1 253109210 253109368 -29084296 + L2 LINE L2 3125 3267 -5 578 71 12 0 chr1 253109389 253109473 -29084191 + (TAGA)n Simple_repeat Simple_repeat 4 88 0 23 123 0 0 chr1 253109948 253110005 -29083659 + AT_rich Low_complexity Low_complexity 1 57 0 380 322 153 11 chr1 253110179 253110356 -29083308 + MIR3 SINE MIR 7 208 0 2456 208 62 40 chr1 253110459 253111060 -29082604 + MLT1E2 LTR MaLR 13 626 0 24 0 0 0 chr1 253111293 253111317 -29082347 + AT_rich Low_complexity Low_complexity 1 24 0 887 169 36 46 chr1 253111599 253111794 -29081870 - MER112 DNA MER1_type -3 257 65 573 307 56 0 chr1 253111875 253112054 -29081610 - MIR SINE MIR -51 211 23 2192 99 0 7 chr1 253112171 253112483 -29081181 - AluSq SINE Alu 0 310 1 2534 72 0 0 chr1 253113204 253113511 -29080153 + AluY SINE Alu 3 309 -2 2254 103 0 0 chr1 253116116 253116417 -29077247 - AluY SINE Alu -10 301 1 1601 194 31 9 chr1 253116751 253117075 -29076589 + LTR53 LTR ERVL 189 519 0 292 305 47 39 chr1 253117311 253117439 -29076225 - L2 LINE L2 -42 3271 3143 1260 273 82 0 chr1 253117473 253117788 -29075876 + MER58B DNA MER1_type 1 341 0 240 340 28 9 chr1 253117824 253117930 -29075734 - L2 LINE L2 -252 3061 2954 301 234 26 13 chr1 253117973 253118050 -29075614 - L2 LINE L2 -1 3312 3235 835 206 201 0 chr1 253118058 253118252 -29075412 - MER46A DNA MER2_type -1 235 3 753 336 89 38 chr1 253118252 253118969 -29074695 - L2 LINE L2 -1225 2089 1336 1545 70 23 14 chr1 253119098 253119312 -29074352 + THE1C LTR MaLR 2 217 -158 1445 93 19 19 chr1 253119624 253119839 -29073825 + THE1C LTR MaLR 2 216 -159 9716 23 0 0 chr1 253119839 253121677 -29071987 - L1PA3 LINE L1 0 6155 4318 5108 25 2 0 chr1 253121677 253122265 -29071399 + L1PA3 LINE L1 3724 4312 -1834 1201 118 6 0 chr1 253122265 253122434 -29071230 + THE1C LTR MaLR 206 375 0 903 186 76 119 chr1 253122766 253123097 -29070567 + L1MB7 LINE L1 5808 6122 -62 1957 182 6 20 chr1 253123215 253123556 -29070108 - MER58B DNA MER1_type -1 340 5 203 204 37 37 chr1 253124235 253124289 -29069375 + MIR3 SINE MIR 14 67 -141 1135 228 24 35 chr1 253124864 253125154 -29068510 + LTR9 LTR ERV1 326 612 0 297 0 0 0 chr1 253125606 253125639 -29068025 + (CA)n Simple_repeat Simple_repeat 2 34 0 1703 171 7 7 chr1 253125677 253125969 -29067695 + AluJb SINE Alu 11 302 -10 780 196 20 0 chr1 253126554 253126702 -29066962 + Charlie4 DNA MER1_type 1801 1951 -10 292 317 67 0 chr1 253126723 253126827 -29066837 + L2 LINE L2 3203 3313 0 264 242 32 0 chr1 253126833 253126895 -29066769 + L2 LINE L2 3204 3267 -5 237 349 0 0 chr1 253127315 253127381 -29066283 - tRNA-Ile-ATT tRNA tRNA -3 74 9 336 211 256 0 chr1 253128347 253128437 -29065227 - MER94 DNA DNA 0 134 22 2366 236 104 26 chr1 253128437 253128833 -29064831 + L1M4 LINE L1 4521 4885 -1261 1705 156 3 55 chr1 253128833 253129141 -29064523 + AluJo SINE Alu 1 292 -20 2366 236 104 26 chr1 253129141 253129472 -29064192 + L1M4 LINE L1 4885 5305 -841 249 281 33 74 chr1 253129473 253129594 -29064070 - MIR3 SINE MIR -92 116 1 189 0 0 0 chr1 253130291 253130312 -29063352 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 279 0 0 0 chr1 253130311 253130342 -29063322 + (CA)n Simple_repeat Simple_repeat 1 31 0 1241 208 59 35 chr1 253130375 253130663 -29063001 - LTR16C LTR ERVL -2 489 195 326 221 23 23 chr1 253131238 253131324 -29062340 + MLT1I LTR MaLR 324 409 0 358 245 122 10 chr1 253131353 253131451 -29062213 - L2 LINE L2 0 3313 3205 216 313 82 15 chr1 253131669 253131803 -29061861 - L2 LINE L2 -16 3297 3155 307 205 18 4 chr1 253131934 253132005 -29061659 + AluJ/monomer SINE Alu 1 53 -250 408 302 111 0 chr1 253132531 253132657 -29061007 + L2 LINE L2 3125 3264 -8 517 184 19 0 chr1 253132879 253132982 -29060682 - Tigger2 DNA MER2_type 0 2718 2614 351 314 95 0 chr1 253133234 253133339 -29060325 - L2 LINE L2 0 3272 3158 230 325 0 0 chr1 253133394 253133477 -29060187 + MIR SINE MIR 168 250 -12 187 277 0 0 chr1 253134329 253134376 -29059288 - MIR SINE MIR 0 262 216 620 274 102 41 chr1 253136065 253136617 -29057047 - MLT2F LTR ERVL -8 655 1 212 274 0 32 chr1 253136768 253136830 -29056834 + L2 LINE L2 3213 3272 0 * 267 293 84 68 chr1 253136826 253137017 -29056647 + MIR3 SINE MIR 7 200 -8 193 246 53 18 chr1 253137811 253137868 -29055796 - L2 LINE L2 -6 3266 3208 520 252 15 0 chr1 253138235 253138366 -29055298 - L1MC1 LINE L1 -9 6324 6192 2101 140 0 10 chr1 253138413 253138721 -29054943 - AluSx SINE Alu -7 305 1 22 0 0 0 chr1 253144358 253144380 -29049284 + AT_rich Low_complexity Low_complexity 1 22 0 1753 181 25 0 chr1 253144380 253144661 -29049003 + AluSx SINE Alu 1 288 -24 189 0 0 0 chr1 253144668 253144689 -29048975 + (TA)n Simple_repeat Simple_repeat 2 22 0 1672 154 98 11 chr1 253144692 253144977 -29048687 + AluJo SINE Alu 1 310 -2 1515 184 3 3 chr1 253145005 253145287 -29048377 - L1MC1 LINE L1 -18 6315 6034 416 330 48 26 chr1 253145340 253145570 -29048094 + MIR SINE MIR 1 235 -27 505 300 200 0 chr1 253147048 253147248 -29046416 - MIR SINE MIR -11 251 12 2275 229 35 15 chr1 253147545 253148094 -29045570 + REP3 LTR ERV 1 560 -2 21 36 0 0 chr1 253148204 253148232 -29045432 + AT_rich Low_complexity Low_complexity 1 28 0 264 167 0 0 chr1 253148233 253148281 -29045383 + (CA)n Simple_repeat Simple_repeat 1 48 0 2589 89 17 0 chr1 253148813 253149160 -29044504 - THE1A LTR MaLR -2 353 1 213 39 0 0 chr1 253149172 253149198 -29044466 + (A)n Simple_repeat Simple_repeat 1 26 0 441 303 61 0 chr1 253149818 253149983 -29043681 - MIR SINE MIR 0 262 88 552 118 0 29 chr1 253150818 253150920 -29042744 + L1PA6 LINE L1 6053 6151 -3 23 0 0 0 chr1 253150920 253150943 -29042721 + AT_rich Low_complexity Low_complexity 1 23 0 186 274 0 116 chr1 253150993 253151088 -29042576 - MIR SINE MIR -158 104 21 1860 169 10 0 chr1 253151395 253151702 -29041962 - AluJo SINE Alu -2 310 1 5897 109 10 15 chr1 253151721 253153215 -29040449 - L1PA14 LINE L1 -3 6158 4675 29 47 0 0 chr1 253153375 253153418 -29040246 + AT_rich Low_complexity Low_complexity 1 43 0 970 206 81 81 chr1 253153983 253154234 -29039430 + L2 LINE L2 2343 2596 -718 1710 154 47 24 chr1 253154234 253154532 -29039132 - AluJo SINE Alu -7 305 1 970 206 81 81 chr1 253154532 253154639 -29039025 + L2 LINE L2 2595 2701 -613 1549 279 53 29 chr1 253154647 253155498 -29038166 - L1MC4 LINE L1 -96 7712 6853 285 29 0 0 chr1 253155500 253155534 -29038130 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1200 53 13 0 chr1 253155534 253155686 -29037978 - L1PA7 LINE L1 -18 6136 5983 4781 52 1 1 chr1 253155686 253156533 -29037131 + L1PA7 LINE L1 5022 5867 -287 3820 239 34 15 chr1 253156549 253157638 -29036026 - L1MC3 LINE L1 -6 7779 6670 360 235 29 0 chr1 253157876 253157978 -29035686 - MER94 DNA DNA -29 105 1 2168 172 36 124 chr1 253158239 253158908 -29034756 + LTR9 LTR ERV1 1 610 -2 2150 104 7 7 chr1 253159043 253159342 -29034322 - AluSc SINE Alu -10 299 1 1686 189 4 0 chr1 253160401 253160682 -29032982 - AluJo SINE Alu -30 282 1 2258 171 11 23 chr1 253160890 253161330 -29032334 + L1PB4 LINE L1 5715 6149 -7 265 393 60 0 chr1 253161363 253161480 -29032184 + MIR SINE MIR 24 147 -61 279 323 8 48 chr1 253161529 253161653 -29032011 + MIR SINE MIR 71 189 -73 26 64 0 0 chr1 253162292 253162339 -29031325 + AT_rich Low_complexity Low_complexity 1 47 0 887 202 79 15 chr1 253162350 253162553 -29031111 - MIR SINE MIR -26 236 21 204 310 133 53 chr1 253162734 253162847 -29030817 - L3 LINE CR1 -38 1539 1418 42073 39 0 5 chr1 253163377 253169569 -29024095 + L1PA3 LINE L1 1 6167 0 611 284 51 15 chr1 253169622 253169819 -29023845 + MIR SINE MIR 53 256 -6 307 286 79 41 chr1 253169833 253170000 -29023664 - MIR SINE MIR -64 198 24 203 254 0 55 chr1 253169965 253170020 -29023644 + MIR SINE MIR 211 262 0 * 15386 171 39 4 chr1 253170341 253176615 -29017049 + L1PB2 LINE L1 1 6520 -347 497 57 0 14 chr1 253176615 253176685 -29016979 + (TA)n Simple_repeat Simple_repeat 1 69 0 15386 171 39 4 chr1 253176685 253177044 -29016620 + L1PB2 LINE L1 6520 6865 -2 5531 76 12 5 chr1 253177290 253178108 -29015556 + L1P LINE L1 4288 5111 -1035 28890 74 6 1 chr1 253178208 253183020 -29010644 - L1PA6 LINE L1 -19 6135 1304 731 283 123 0 chr1 253183832 253184044 -29009620 + MIR SINE MIR 18 255 -7 1318 229 93 52 chr1 253185650 253186153 -29007511 + MLT1H LTR MaLR 8 531 -18 339 353 27 5 chr1 253186269 253186490 -29007174 + HERV16 LTR ERVL 947 1172 -3824 848 334 26 56 chr1 253186582 253187240 -29006424 + HERV16 LTR ERVL 1301 2007 -2989 2153 107 0 7 chr1 253187240 253187524 -29006140 + AluSg SINE Alu 1 284 -26 369 0 0 0 chr1 253187524 253187565 -29006099 + (CA)n Simple_repeat Simple_repeat 2 42 0 2153 107 0 7 chr1 253187565 253187578 -29006086 + AluSg SINE Alu 284 296 -14 848 334 26 56 chr1 253187578 253187649 -29006015 + HERV16 LTR ERVL 2007 2079 -2917 617 286 62 0 chr1 253187662 253187840 -29005824 + HERV16 LTR ERVL 2192 2380 -3384 40043 36 22 3 chr1 253187840 253193865 -28999799 + L1PA3 LINE L1 8 6154 -1 356 342 18 6 chr1 253194096 253194274 -28999390 + HERV16 LTR ERVL 2626 2779 -2217 2299 159 79 21 chr1 253194307 253194890 -28998774 - Charlie1 DNA MER1_type -6 2755 2139 1209 169 24 0 chr1 253194898 253195111 -28998553 - MLT2B1 LTR ERVL 0 520 303 1524 197 49 0 chr1 253195114 253195459 -28998205 - Charlie1 DNA MER1_type -638 2123 1762 559 284 43 37 chr1 253195498 253195655 -28998009 + L1ME4a LINE L1 5473 5628 -493 1724 156 7 49 chr1 253195655 253195962 -28997702 + AluJb SINE Alu 1 294 -18 559 284 43 37 chr1 253195962 253196156 -28997508 + L1ME4a LINE L1 5628 5826 -295 2139 249 40 4 chr1 253196183 253196865 -28996799 - L1M4 LINE L1 -3236 2910 2205 4309 23 0 15 chr1 253197073 253197548 -28996116 - SVA Other Other 0 1386 919 321 47 0 0 chr1 253197549 253197592 -28996072 + U5 snRNA snRNA 6 48 -68 1075 65 0 0 chr1 253197666 253197804 -28995860 + L1PA3 LINE L1 6015 6152 -3 2055 151 0 0 chr1 253198463 253198761 -28994903 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr1 253199035 253199070 -28994594 + AT_rich Low_complexity Low_complexity 1 35 0 667 189 0 87 chr1 253200512 253200708 -28992956 + MER96B DNA MER1_type? 3 181 -236 25 0 0 0 chr1 253200872 253200897 -28992767 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr1 253201729 253201758 -28991906 + AT_rich Low_complexity Low_complexity 1 29 0 786 244 22 96 chr1 253205148 253205419 -28988245 + MIR SINE MIR 2 252 -10 29 0 0 0 chr1 253206840 253206869 -28986795 + AT_rich Low_complexity Low_complexity 1 29 0 831 214 67 45 chr1 253207145 253207369 -28986295 + MIR SINE MIR 32 260 -2 1362 269 76 49 chr1 253207687 253207770 -28985894 + L2 LINE L2 1618 1697 -1617 1391 145 27 54 chr1 253207770 253208067 -28985597 - L1MB3 LINE L1 -4 6179 5891 1362 269 76 49 chr1 253208067 253208513 -28985151 + L2 LINE L2 1697 2162 -1152 1143 196 64 26 chr1 253208513 253208825 -28984839 + MER5C DNA MER1_type 1 324 0 888 234 5 5 chr1 253208825 253209022 -28984642 + L2 LINE L2 2163 2359 -955 304 250 44 83 chr1 253209187 253209415 -28984249 + L1M4 LINE L1 3339 3557 -2589 6035 211 98 16 chr1 253209495 253210738 -28982926 + L1MB1 LINE L1 2365 3504 -2642 1774 170 3 3 chr1 253210738 253211045 -28982619 + AluJo SINE Alu 1 307 0 6035 211 98 16 chr1 253211045 253211537 -28982127 + L1MB1 LINE L1 3504 4253 -1893 300 27 0 0 chr1 253211537 253211574 -28982090 + (CA)n Simple_repeat Simple_repeat 2 38 0 6035 211 98 16 chr1 253211574 253211612 -28982052 + L1MB1 LINE L1 4253 4286 -1860 * 36131 45 4 0 chr1 253211610 253217110 -28976554 + L1PA4 LINE L1 631 6150 -5 4523 168 41 22 chr1 253217135 253217774 -28975890 + L1MB1 LINE L1 4277 4902 -1266 1874 167 0 3 chr1 253217774 253218068 -28975596 + AluJb SINE Alu 1 293 -19 4523 168 41 22 chr1 253218068 253219299 -28974365 + L1MB1 LINE L1 4902 6168 0 21 0 0 0 chr1 253219386 253219407 -28974257 + AT_rich Low_complexity Low_complexity 1 21 0 267 256 0 34 chr1 253219624 253219741 -28973923 + L1M4 LINE L1 4579 4691 -1455 424 327 41 37 chr1 253220301 253220916 -28972748 + L1MEd LINE L1 571 1187 -4932 528 184 0 29 chr1 253220916 253221019 -28972645 - AluJ/FLAM SINE Alu -212 100 1 260 363 15 22 chr1 253222017 253222152 -28971512 - MIR3 SINE MIR -54 154 21 2061 130 7 13 chr1 253223074 253223375 -28970289 + AluSx SINE Alu 1 299 -13 1833 142 4 0 chr1 253223379 253223647 -28970017 + AluSx SINE Alu 31 299 -13 193 383 37 37 chr1 253223670 253223777 -28969887 - MIR SINE MIR -150 112 6 876 194 115 9 chr1 253223860 253224077 -28969587 + MIR SINE MIR 6 245 -17 307 274 113 0 chr1 253224879 253224985 -28968679 - MIR3 SINE MIR 0 208 91 444 163 0 0 chr1 253225411 253225497 -28968167 + GA-rich Low_complexity Low_complexity 1 86 0 1819 124 73 0 chr1 253225953 253226226 -28967438 + AluSx SINE Alu 13 305 -7 234 232 54 54 chr1 253226362 253226474 -28967190 - MLT1J LTR MaLR 0 511 400 387 262 107 87 chr1 253228584 253228688 -28964976 + MIR SINE MIR 6 106 -156 2209 110 3 0 chr1 253228688 253228978 -28964686 + AluSx SINE Alu 1 291 -21 387 262 107 87 chr1 253228978 253229125 -28964539 + MIR SINE MIR 106 262 0 362 257 0 0 chr1 253229512 253229621 -28964043 + L1MC4a LINE L1 5789 5897 -1911 201 39 0 0 chr1 253230120 253230146 -28963518 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2254 116 0 7 chr1 253230479 253230789 -28962875 + AluSx SINE Alu 1 308 -4 430 249 53 47 chr1 253230901 253231070 -28962594 - MIR SINE MIR -59 203 34 2042 180 50 101 chr1 253231111 253231440 -28962224 + MER90 LTR ERV1 5 286 -328 1555 154 4 15 chr1 253231440 253231699 -28961965 + AluJo SINE Alu 41 296 -16 2042 180 50 101 chr1 253231699 253232012 -28961652 + MER90 LTR ERV1 286 614 0 491 284 37 74 chr1 253232467 253232657 -28961007 - MIR SINE MIR -36 226 44 2166 127 0 0 chr1 253232809 253233116 -28960548 - AluSx SINE Alu -5 307 1 848 334 26 56 chr1 253233612 253234270 -28959394 + HERV16 LTR ERVL 1301 2007 -2989 2125 108 0 7 chr1 253234270 253234551 -28959113 + AluSg SINE Alu 1 281 -29 396 0 0 0 chr1 253234551 253234595 -28959069 + (CA)n Simple_repeat Simple_repeat 1 44 0 2125 108 0 7 chr1 253234595 253234608 -28959056 + AluSg SINE Alu 281 293 -17 848 334 26 56 chr1 253234608 253234679 -28958985 + HERV16 LTR ERVL 2007 2079 -2917 617 286 62 0 chr1 253234692 253234870 -28958794 + HERV16 LTR ERVL 2192 2380 -3384 40122 38 25 2 chr1 253234870 253240910 -28952754 + L1PA3 LINE L1 8 6155 0 182 265 20 0 chr1 253241234 253241283 -28952381 + MIR SINE MIR 88 137 -125 2330 75 0 0 chr1 253241476 253241780 -28951884 + AluY SINE Alu 1 304 0 2137 127 10 3 chr1 253241786 253242085 -28951579 + AluSq SINE Alu 1 301 -12 1417 144 0 60 chr1 253242129 253242379 -28951285 - AluJo SINE Alu -77 235 1 240 86 0 0 chr1 253243110 253243145 -28950519 + (TA)n Simple_repeat Simple_repeat 2 36 0 2462 54 14 0 chr1 253243213 253243507 -28950157 + AluY SINE Alu 2 299 -12 807 207 58 21 chr1 253243739 253243927 -28949737 - AluJo SINE Alu -32 280 86 180 0 0 0 chr1 253243927 253243947 -28949717 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 21 57 0 0 chr1 253243947 253243982 -28949682 + AT_rich Low_complexity Low_complexity 1 35 0 1062 254 73 21 chr1 253244022 253244404 -28949260 - L1ME LINE L1 -407 5755 5354 207 356 0 19 chr1 253245602 253245706 -28947958 + L2 LINE L2 1862 1963 -1351 246 293 93 0 chr1 253245956 253246031 -28947633 - L2 LINE L2 -37 3235 3154 297 176 44 29 chr1 253246324 253246392 -28947272 + MIR SINE MIR 194 262 0 306 296 75 31 chr1 253246399 253246558 -28947106 - L2 LINE L2 -560 2754 2589 2119 125 3 26 chr1 253246828 253247139 -28946525 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 253247404 253247425 -28946239 + AT_rich Low_complexity Low_complexity 1 21 0 222 211 0 0 chr1 253248022 253248060 -28945604 + (TG)n Simple_repeat Simple_repeat 2 39 0 2391 84 0 0 chr1 253248134 253248430 -28945234 + AluSq SINE Alu 1 296 -17 398 341 92 62 chr1 253249864 253250365 -28943299 + L2 LINE L2 2241 2756 -558 2224 118 0 0 chr1 253250624 253250920 -28942744 + AluSx SINE Alu 1 296 -16 393 275 205 6 chr1 253251183 253251354 -28942310 + MIR SINE MIR 57 261 -1 206 340 50 35 chr1 253251354 253251495 -28942169 + L3 LINE CR1 1310 1452 -125 355 335 62 11 chr1 253251536 253251715 -28941949 - MIR3 SINE MIR -6 202 15 2300 92 0 13 chr1 253251850 253252153 -28941511 + AluSx SINE Alu 1 299 -13 1212 237 131 25 chr1 253252171 253252661 -28941003 - MLT1F LTR MaLR 0 542 1 2187 52 0 0 chr1 253252999 253253269 -28940395 + L1PA5 LINE L1 5881 6150 -4 23 54 0 0 chr1 253253827 253253864 -28939800 + AT_rich Low_complexity Low_complexity 1 37 0 774 261 122 56 chr1 253253864 253254019 -28939645 - L2 LINE L2 -31 3282 3139 855 138 8 0 chr1 253254019 253254149 -28939515 + FLAM_C SINE Alu 1 131 -2 774 261 122 56 chr1 253254149 253254498 -28939166 - L2 LINE L2 -174 3139 2741 2336 103 0 3 chr1 253254498 253254799 -28938865 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr1 253256403 253256423 -28937241 + (A)n Simple_repeat Simple_repeat 1 20 0 190 236 112 34 chr1 253256560 253256649 -28937015 + MIR SINE MIR 157 252 -10 704 105 29 0 chr1 253256670 253256775 -28936889 + FLAM_A SINE Alu 32 139 -3 243 203 0 76 chr1 253258980 253259059 -28934605 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 2247 100 7 0 chr1 253259903 253260194 -28933470 + AluSq SINE Alu 1 293 -20 2374 79 0 7 chr1 253260335 253260640 -28933024 - AluY SINE Alu -8 303 1 458 272 95 7 chr1 253261638 253261785 -28931879 - MIR SINE MIR -83 179 20 188 197 98 49 chr1 253262253 253262314 -28931350 + MIR SINE MIR 81 144 -64 22 0 0 0 chr1 253263502 253263524 -28930140 + AT_rich Low_complexity Low_complexity 1 22 0 2055 116 14 11 chr1 253264368 253264652 -28929012 - AluSx SINE Alu -22 290 6 467 254 200 0 chr1 253265682 253265867 -28927797 - MIR SINE MIR -13 249 28 2631 43 0 0 chr1 253265871 253266171 -28927493 - AluY SINE Alu -11 300 1 268 278 125 0 chr1 253266201 253266273 -28927391 + L2 LINE L2 3182 3262 -10 1761 134 98 0 chr1 253266275 253266550 -28927114 - AluSx SINE Alu -10 302 1 1885 159 0 3 chr1 253267111 253267406 -28926258 - AluJo SINE Alu -18 294 1 34 65 0 0 chr1 253268281 253268343 -28925321 + AT_rich Low_complexity Low_complexity 1 62 0 2286 95 3 0 chr1 253268389 253268683 -28924981 - AluSg SINE Alu -15 295 1 507 178 10 0 chr1 253269609 253269710 -28923954 - U13 snRNA snRNA -2 102 1 914 136 0 141 chr1 253270209 253270415 -28923249 - AluSq SINE Alu 0 313 137 2145 130 0 0 chr1 253270442 253270735 -28922929 + AluSx SINE Alu 1 293 -19 569 214 23 7 chr1 253270878 253271045 -28922619 + L1ME1 LINE L1 5931 6105 -73 29 28 0 0 chr1 253271045 253271081 -28922583 + AT_rich Low_complexity Low_complexity 1 36 0 2149 122 3 0 chr1 253271214 253271509 -28922155 + AluSx SINE Alu 1 296 -16 189 274 27 55 chr1 253271711 253271784 -28921880 + L2 LINE L2 2930 3000 -272 1747 196 0 0 chr1 253271806 253272118 -28921546 + AluJo SINE Alu 1 312 0 191 269 134 15 chr1 253272279 253272346 -28921318 + L2 LINE L2 3186 3260 -12 1825 215 125 39 chr1 253272535 253273200 -28920464 + L1MC4 LINE L1 7291 8012 -30 319 327 139 48 chr1 253273429 253273568 -28920096 - L2 LINE L2 -4 3268 3102 1973 144 17 0 chr1 253273568 253273866 -28919798 + AluSx SINE Alu 1 303 -9 319 327 139 48 chr1 253273866 253273934 -28919730 - L2 LINE L2 -170 3102 3042 2137 169 50 20 chr1 253273971 253274048 -28919616 + L1MA4A LINE L1 3230 3303 -2843 2148 116 0 10 chr1 253274048 253274358 -28919306 + AluSg1 SINE Alu 1 307 -2 2137 169 50 20 chr1 253274358 253274778 -28918886 + L1MA4A LINE L1 3303 3742 -2404 2310 95 3 0 chr1 253274786 253275080 -28918584 + AluY SINE Alu 9 303 -8 1929 109 0 69 chr1 253275088 253275223 -28918441 + AluSx SINE Alu 1 144 -161 2137 104 3 3 chr1 253275223 253275512 -28918152 + AluSp SINE Alu 2 290 -23 1929 109 0 69 chr1 253275512 253275702 -28917962 + AluSx SINE Alu 144 305 0 5550 147 21 28 chr1 253275702 253276099 -28917565 + L1MA4A LINE L1 4580 4978 -1325 1854 59 0 0 chr1 253276099 253276318 -28917346 + AluY SINE Alu 83 301 -10 5550 147 21 28 chr1 253276318 253277640 -28916024 + L1MA4A LINE L1 4978 6292 -11 1937 116 72 0 chr1 253277692 253277969 -28915695 + AluSx SINE Alu 1 297 -15 1885 171 11 20 chr1 253278296 253278565 -28915099 - MER7A DNA MER2_type -2693 345 80 1171 170 8 104 chr1 253278565 253278824 -28914840 + MER8 DNA MER2_type 2 235 -4 1885 171 11 20 chr1 253278824 253278904 -28914760 - MER7A DNA MER2_type -2958 80 1 332 288 121 45 chr1 253279564 253279696 -28913968 + MIR3 SINE MIR 16 157 -51 1052 116 0 0 chr1 253280578 253280725 -28912939 - AluSg/x SINE Alu -9 303 157 2471 84 0 3 chr1 253280738 253281049 -28912615 - AluY SINE Alu -1 310 1 1712 181 7 4 chr1 253281071 253281352 -28912312 - AluJb SINE Alu -30 282 1 21 36 0 0 chr1 253281767 253281795 -28911869 + AT_rich Low_complexity Low_complexity 1 28 0 277 345 35 9 chr1 253282202 253282318 -28911346 + MIR SINE MIR 21 139 -123 430 237 97 9 chr1 253282328 253282442 -28911222 - L2 LINE L2 0 3313 3190 193 213 43 0 chr1 253282474 253282521 -28911143 + MIR SINE MIR 183 231 -31 23 0 0 0 chr1 253282589 253282612 -28911052 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr1 253282646 253282691 -28910973 + AT_rich Low_complexity Low_complexity 1 45 0 737 268 88 31 chr1 253282739 253282967 -28910697 + MIR SINE MIR 1 241 -21 2447 55 0 13 chr1 253283097 253283405 -28910259 + AluY SINE Alu 1 304 -7 25 0 0 0 chr1 253284751 253284776 -28908888 + AT_rich Low_complexity Low_complexity 1 25 0 1487 187 10 10 chr1 253284776 253285065 -28908599 - AluJo SINE Alu -23 289 1 871 130 0 29 chr1 253285129 253285267 -28908397 + AluJb SINE Alu 1 134 -178 25 65 0 0 chr1 253286025 253286071 -28907593 + AT_rich Low_complexity Low_complexity 1 46 0 528 87 120 0 chr1 253286098 253286190 -28907474 + L1MA8 LINE L1 6186 6288 -3 1909 146 7 7 chr1 253286198 253286492 -28907172 + AluSx SINE Alu 1 294 -18 2210 101 3 0 chr1 253286492 253286790 -28906874 + AluSp SINE Alu 1 299 -14 229 255 0 0 chr1 253287200 253287247 -28906417 - L1M2 LINE L1 -638 5674 5628 2442 79 0 25 chr1 253289373 253289691 -28903973 + AluSp SINE Alu 1 310 -3 1861 163 10 0 chr1 253289827 253290121 -28903543 + AluSx SINE Alu 1 297 -15 266 333 56 28 chr1 253290541 253290649 -28903015 + L2 LINE L2 3150 3260 -12 1623 162 49 4 chr1 253290664 253290930 -28902734 - AluJo SINE Alu -30 282 5 296 281 194 25 chr1 253290995 253291155 -28902509 - MIR SINE MIR -48 214 28 235 297 72 29 chr1 253291199 253291291 -28902373 + L1MB8 LINE L1 6034 6135 -43 2277 100 0 7 chr1 253291291 253291591 -28902073 - AluSg1 SINE Alu -11 298 1 235 297 72 29 chr1 253291591 253291636 -28902028 + L1MB8 LINE L1 6135 6177 -1 * 247 293 57 9 chr1 253291631 253291737 -28901927 + L1MC4a LINE L1 5816 5926 -1882 855 163 0 0 chr1 253293082 253293217 -28900447 + FRAM SINE Alu 21 155 -21 700 187 16 169 chr1 253293607 253293706 -28899958 + L1MC5 LINE L1 7610 7723 -238 2098 129 3 7 chr1 253293706 253294009 -28899655 + AluSp SINE Alu 1 302 -11 700 187 16 169 chr1 253294009 253294024 -28899640 + L1MC5 LINE L1 7723 7739 -222 1858 165 0 0 chr1 253294024 253294315 -28899349 + AluJb SINE Alu 13 303 -9 700 187 16 169 chr1 253294315 253294437 -28899227 + L1MC5 LINE L1 7739 7770 -191 2899 7 0 0 chr1 253294437 253294746 -28898918 + AluYb8 SINE Alu 1 309 -9 700 187 16 169 chr1 253294746 253294886 -28898778 + L1MC5 LINE L1 7770 7930 -31 243 0 0 0 chr1 253295245 253295272 -28898392 + (CA)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr1 253295271 253295294 -28898370 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 292 198 161 0 chr1 253295563 253295644 -28898020 - MIR SINE MIR -90 172 79 368 271 93 0 chr1 253295694 253295812 -28897852 + MIR3 SINE MIR 77 205 -3 2337 90 0 0 chr1 253296208 253296498 -28897166 + AluSg SINE Alu 2 291 -19 2050 139 0 16 chr1 253296511 253296821 -28896843 + AluSx SINE Alu 1 305 -7 543 184 131 25 chr1 253297050 253297211 -28896453 + MLT1C LTR MaLR 1 178 -212 2211 108 0 3 chr1 253297455 253297752 -28895912 - AluSg SINE Alu -14 296 1 261 0 0 0 chr1 253297988 253298017 -28895647 + (A)n Simple_repeat Simple_repeat 1 29 0 1680 169 7 50 chr1 253298055 253298189 -28895475 + AluSx SINE Alu 1 139 -173 2399 94 3 0 chr1 253298189 253298497 -28895167 + AluY SINE Alu 1 309 -2 1680 169 7 50 chr1 253298497 253298509 -28895155 + AluSx SINE Alu 139 150 -162 2279 100 0 13 chr1 253298509 253298808 -28894856 + AluSx SINE Alu 1 295 -17 1680 169 7 50 chr1 253298808 253298962 -28894702 + AluSx SINE Alu 150 289 -23 1077 253 16 4 chr1 253298976 253299233 -28894431 + MLT1C LTR MaLR 208 467 0 2287 98 6 16 chr1 253299944 253300259 -28893405 + AluSx SINE Alu 1 312 0 428 306 189 0 chr1 253301049 253301229 -28892435 + MIR SINE MIR 2 215 -47 728 170 0 0 chr1 253301636 253301742 -28891922 + FLAM_C SINE Alu 2 107 -36 827 157 0 0 chr1 253302043 253302158 -28891506 + FLAM_C SINE Alu 3 117 -16 204 40 0 0 chr1 253302161 253302186 -28891478 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 1822 170 3 6 chr1 253302192 253302503 -28891161 + AluJo SINE Alu 3 312 0 1535 194 7 14 chr1 253302598 253302882 -28890782 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr1 253302887 253302907 -28890757 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2207 101 6 29 chr1 253303528 253303844 -28889820 + AluSp SINE Alu 1 309 -4 2250 48 7 37 chr1 253304858 253305153 -28888511 - AluY SINE Alu -22 289 4 2020 124 3 20 chr1 253305162 253305461 -28888203 - AluSx SINE Alu -18 294 1 23 33 0 0 chr1 253305461 253305491 -28888173 + AT_rich Low_complexity Low_complexity 1 30 0 289 181 145 24 chr1 253307045 253307128 -28886536 + L1ME3 LINE L1 6055 6147 -15 368 294 63 14 chr1 253307179 253307322 -28886342 + L2 LINE L2 3164 3313 0 987 167 111 56 chr1 253307352 253307640 -28886024 + MER33 DNA MER1_type 7 310 -14 2303 98 3 7 chr1 253307644 253307949 -28885715 - AluSg SINE Alu -6 304 1 21 0 0 0 chr1 253308058 253308079 -28885585 + AT_rich Low_complexity Low_complexity 1 21 0 636 299 212 14 chr1 253308249 253308593 -28885071 - L2 LINE L2 -13 3300 2889 2281 80 0 41 chr1 253308693 253309007 -28884657 + AluY SINE Alu 1 301 -10 852 323 139 19 chr1 253309011 253309217 -28884447 + MLT1K LTR MaLR 63 243 -345 2463 81 0 0 chr1 253309217 253309525 -28884139 + AluY SINE Alu 1 308 -3 852 323 139 19 chr1 253309525 253309786 -28883878 + MLT1K LTR MaLR 243 586 -2 301 93 0 0 chr1 253309820 253309863 -28883801 - Alu SINE Alu -5 297 255 956 84 30 0 chr1 253309984 253310115 -28883549 + AluSg/x SINE Alu 171 305 -7 1878 161 3 10 chr1 253310120 253310431 -28883233 + AluJb SINE Alu 2 310 -2 2646 48 0 6 chr1 253310431 253310742 -28882922 + AluY SINE Alu 1 309 -2 199 75 0 50 chr1 253310753 253310793 -28882871 + (GAA)n Simple_repeat Simple_repeat 1 38 0 253 311 118 0 chr1 253310809 253310928 -28882736 + L1MC/D LINE L1 5495 5627 -2181 1573 104 5 5 chr1 253311287 253311509 -28882155 + AluSp SINE Alu 76 297 -16 28 0 0 0 chr1 253311509 253311537 -28882127 + AT_rich Low_complexity Low_complexity 1 28 0 317 253 58 13 chr1 253311541 253311695 -28881969 - L1P5 LINE L1 -712 5442 5282 23 0 0 0 chr1 253311793 253311816 -28881848 + AT_rich Low_complexity Low_complexity 1 23 0 2171 78 21 14 chr1 253311826 253312107 -28881557 - AluSg SINE Alu -26 284 2 1333 99 0 0 chr1 253312323 253312504 -28881160 - AluSg/x SINE Alu -11 299 119 2099 103 21 0 chr1 253312521 253312802 -28880862 + AluSg SINE Alu 1 287 -23 2015 134 0 10 chr1 253312815 253313114 -28880550 + AluSx SINE Alu 1 296 -16 853 202 148 18 chr1 253313810 253314033 -28879631 - MIR SINE MIR -5 257 6 2420 81 0 3 chr1 253315028 253315338 -28878326 - AluY SINE Alu -2 309 1 597 224 0 9 chr1 253315475 253315591 -28878073 + MER8 DNA MER2_type 2 116 -123 24 0 0 0 chr1 253315620 253315644 -28878020 + AT_rich Low_complexity Low_complexity 1 24 0 485 150 38 0 chr1 253315677 253315757 -28877907 + MER8 DNA MER2_type 157 239 0 2343 92 10 0 chr1 253315778 253316083 -28877581 + AluY SINE Alu 1 308 -3 365 322 122 15 chr1 253316083 253316344 -28877320 + MLT1K LTR MaLR 294 586 -2 2472 61 0 0 chr1 253316378 253316674 -28876990 - AluY SINE Alu -15 296 1 236 221 29 29 chr1 253316932 253317000 -28876664 + L2 LINE L2 3225 3292 -21 188 83 0 28 chr1 253317422 253317458 -28876206 + (CATTC)n Simple_repeat Simple_repeat 3 37 0 241 345 87 45 chr1 253317459 253317746 -28875918 + L2 LINE L2 2667 2965 -349 * 387 356 53 10 chr1 253317739 253317947 -28875717 + MIR SINE MIR 32 248 -14 2064 95 0 0 chr1 253318100 253318364 -28875300 + AluSx SINE Alu 1 264 -48 642 167 24 32 chr1 253318457 253318583 -28875081 - FLAM_C SINE Alu -8 125 1 22 0 0 0 chr1 253319179 253319201 -28874463 + GC_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr1 253319505 253319538 -28874126 + AT_rich Low_complexity Low_complexity 1 33 0 720 255 44 5 chr1 253319538 253319742 -28873922 - MER33 DNA MER1_type -111 213 2 593 211 94 6 chr1 253319758 253319938 -28873726 - LTR54 LTR ERV1 0 510 315 381 83 0 0 chr1 253320001 253320049 -28873615 - LTR54B LTR ERV1 -443 55 8 804 220 43 0 chr1 253320414 253320649 -28873015 - MIR SINE MIR -51 211 1 483 273 83 55 chr1 253320667 253320786 -28872878 + L1MC/D LINE L1 5215 5329 -1107 1600 209 0 6 chr1 253320786 253321097 -28872567 + AluJo SINE Alu 1 309 -3 483 273 83 55 chr1 253321097 253321298 -28872366 + L1MC/D LINE L1 5329 5523 -913 1508 98 5 0 chr1 253321298 253321491 -28872173 + AluSp SINE Alu 1 194 -119 483 273 83 55 chr1 253321491 253321540 -28872124 + L1MC/D LINE L1 5523 5569 -867 2141 85 10 33 chr1 253321540 253321846 -28871818 + AluSx SINE Alu 1 299 -13 483 273 83 55 chr1 253321846 253321928 -28871736 + L1MC/D LINE L1 5569 5689 -747 2150 88 0 34 chr1 253322156 253322452 -28871212 + AluSg SINE Alu 1 286 -24 229 65 0 0 chr1 253322481 253322527 -28871137 + LTR66 LTR ERVL 394 439 -171 1931 113 7 11 chr1 253322637 253322912 -28870752 + AluSx SINE Alu 1 274 -38 856 155 63 58 chr1 253322946 253323152 -28870512 + AluJo SINE Alu 105 311 -1 253 311 118 0 chr1 253324125 253324244 -28869420 - L1MC/D LINE L1 -2181 5627 5495 199 75 0 50 chr1 253324260 253324300 -28869364 + (TTC)n Simple_repeat Simple_repeat 1 38 0 2655 48 0 6 chr1 253324311 253324623 -28869041 - AluY SINE Alu -1 310 1 1858 167 3 10 chr1 253324623 253324934 -28868730 - AluJb SINE Alu -2 310 2 2014 117 52 0 chr1 253324939 253325229 -28868435 - AluSx SINE Alu -7 305 1 224 120 20 0 chr1 253326194 253326244 -28867420 + T-rich Low_complexity Low_complexity 2 52 0 2318 85 3 16 chr1 253327926 253328232 -28865432 + AluSx SINE Alu 5 306 -6 2261 104 0 0 chr1 253328327 253328624 -28865040 - AluSx SINE Alu -15 297 1 938 246 35 5 chr1 253328881 253329084 -28864580 + MIR SINE MIR 6 214 -48 496 272 63 21 chr1 253329386 253329577 -28864087 - MIR3 SINE MIR -7 201 3 2108 122 6 10 chr1 253329786 253330097 -28863567 - AluSx SINE Alu -1 311 2 558 256 126 35 chr1 253330892 253331122 -28862542 + MIR SINE MIR 12 262 0 284 290 51 58 chr1 253331200 253331338 -28862326 - MIR SINE MIR -96 166 30 729 135 0 18 chr1 253331559 253331698 -28861966 + FLAM_C SINE Alu 35 171 0 225 0 0 0 chr1 253331698 253331723 -28861941 + (CA)n Simple_repeat Simple_repeat 2 26 0 955 186 6 0 chr1 253331744 253331900 -28861764 + AluJo SINE Alu 120 276 -36 417 66 0 0 chr1 253331907 253331968 -28861696 + (TC)n Simple_repeat Simple_repeat 2 62 0 315 0 0 0 chr1 253331970 253332005 -28861659 + (CA)n Simple_repeat Simple_repeat 1 35 0 490 237 169 23 chr1 253332143 253332362 -28861302 - MER112 DNA MER1_type -4 252 2 518 254 25 0 chr1 253332459 253332577 -28861087 + MIR SINE MIR 31 151 -111 3189 128 100 5 chr1 253332585 253333156 -28860508 - LTR24C LTR ERV1 -10 625 1 222 257 55 64 chr1 253333159 253333268 -28860396 + MIR SINE MIR 155 262 0 509 286 82 29 chr1 253334040 253334083 -28859581 - MER5A DNA MER1_type 0 189 150 2331 97 3 3 chr1 253334083 253334381 -28859283 - AluSq SINE Alu -13 300 3 509 286 82 29 chr1 253334381 253334508 -28859156 - MER5A DNA MER1_type -39 150 10 300 203 13 25 chr1 253335846 253335865 -28857799 + AluSg/x SINE Alu 118 135 -165 2354 103 0 6 chr1 253335865 253336177 -28857487 + AluSx SINE Alu 3 312 0 1538 170 6 71 chr1 253336595 253336906 -28856758 + AluJo SINE Alu 12 302 -10 840 210 55 42 chr1 253336920 253337158 -28856506 - MIR SINE MIR 0 262 22 310 192 106 58 chr1 253337185 253337289 -28856375 - L1ME4a LINE L1 -22 6099 5991 350 267 123 0 chr1 253337313 253337459 -28856205 - L1ME4a LINE L1 -204 5917 5754 344 250 144 43 chr1 253337501 253337709 -28855955 - L1ME4a LINE L1 -439 5682 5454 840 152 8 0 chr1 253339944 253340076 -28853588 - FLAM_C SINE Alu 0 133 1 2540 74 0 0 chr1 253341011 253341322 -28852342 - AluY SINE Alu 0 311 1 249 33 0 0 chr1 253341675 253341705 -28851959 + (T)n Simple_repeat Simple_repeat 1 30 0 844 209 66 28 chr1 253341862 253342073 -28851591 - MER20 DNA MER1_type 0 219 1 252 0 0 0 chr1 253342701 253342729 -28850935 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr1 253343410 253343434 -28850230 + AT_rich Low_complexity Low_complexity 1 24 0 2006 98 4 0 chr1 253343611 253343877 -28849787 - AluSx SINE Alu -45 267 1 251 293 106 25 chr1 253344439 253344637 -28849027 + L2 LINE L2 3085 3298 -15 195 42 0 0 chr1 253344639 253344663 -28849001 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 295 274 52 74 chr1 253344701 253344836 -28848828 + MIR SINE MIR 74 205 -57 872 158 20 0 chr1 253345355 253345501 -28848163 + MER57A LTR ERV1 1 149 -254 1784 134 11 8 chr1 253345507 253345775 -28847889 - AluSx SINE Alu -43 269 1 2207 128 0 0 chr1 253347015 253347327 -28846337 + AluSx SINE Alu 1 312 0 437 284 37 74 chr1 253347480 253347670 -28845994 + MIR SINE MIR 44 226 -36 2112 180 50 102 chr1 253348125 253348438 -28845226 - MER90 LTR ERV1 0 614 351 1551 154 4 15 chr1 253348438 253348697 -28844967 - AluJo SINE Alu -16 296 41 2112 180 50 102 chr1 253348697 253349027 -28844637 - MER90 LTR ERV1 -263 351 5 381 249 53 47 chr1 253349068 253349237 -28844427 + MIR SINE MIR 34 203 -59 2355 103 0 7 chr1 253349349 253349659 -28844005 - AluSx SINE Alu -4 308 1 434 92 31 0 chr1 253350912 253350977 -28842687 - Alu SINE Alu -243 68 2 1813 131 4 0 chr1 253351090 253351349 -28842315 + AluSx SINE Alu 42 301 -11 2300 98 0 0 chr1 253351454 253351740 -28841924 + AluSx SINE Alu 1 286 -26 244 84 56 14 chr1 253351740 253351811 -28841853 + (TA)n Simple_repeat Simple_repeat 1 74 0 324 0 0 0 chr1 253351813 253351849 -28841815 + (TC)n Simple_repeat Simple_repeat 2 37 0 207 0 0 0 chr1 253351848 253351871 -28841793 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 1012 246 148 42 chr1 253351944 253352350 -28841314 - LTR16A LTR ERVL 0 450 2 2361 97 0 0 chr1 253352375 253352674 -28840990 - AluSx SINE Alu -13 299 1 1768 95 110 0 chr1 253352702 253352965 -28840699 + AluSg1 SINE Alu 1 292 -17 1716 127 110 49 chr1 253353179 253353582 -28840082 + THE1C LTR MaLR 1 428 0 2476 76 0 3 chr1 253354383 253354684 -28838980 + AluSg SINE Alu 1 300 -10 2087 125 3 3 chr1 253355040 253355327 -28838337 + AluSg SINE Alu 1 287 -23 298 113 75 0 chr1 253355327 253355433 -28838231 + (TA)n Simple_repeat Simple_repeat 1 114 0 198 99 0 93 chr1 253355446 253355607 -28838057 + (TTA)n Simple_repeat Simple_repeat 3 148 0 25 0 0 0 chr1 253355610 253355635 -28838029 + AT_rich Low_complexity Low_complexity 1 25 0 1561 165 10 47 chr1 253355728 253356025 -28837639 - AluJo SINE Alu -11 301 16 1042 167 137 20 chr1 253356343 253356547 -28837117 + AluJo SINE Alu 82 309 -3 760 276 86 99 chr1 253356547 253357184 -28836480 + L3 LINE CR1 336 964 -613 2223 94 7 39 chr1 253357195 253357406 -28836258 - AluSp SINE Alu 0 337 139 2327 104 3 3 chr1 253357406 253357713 -28835951 - AluY SINE Alu -2 309 3 2223 94 7 39 chr1 253357713 253357848 -28835816 - AluSp SINE Alu -198 139 1 322 194 312 0 chr1 253358388 253358481 -28835183 - L2 LINE L2 -5 3308 3187 433 204 0 48 chr1 253358483 253358586 -28835078 - Charlie7 DNA MER1_type -1031 1581 1484 2197 103 0 0 chr1 253358593 253358897 -28834767 + AluSg SINE Alu 1 304 0 587 265 186 0 chr1 253358905 253359120 -28834544 - Charlie7 DNA MER1_type -2256 356 102 2185 119 3 3 chr1 253359141 253359435 -28834229 + AluSc SINE Alu 1 294 -15 191 337 257 0 chr1 253359491 253359678 -28833986 + L3 LINE CR1 1320 1554 -23 2275 100 0 16 chr1 253360343 253360652 -28833012 + AluSg SINE Alu 1 304 -6 1123 442 27 0 chr1 253361320 253361614 -28832050 + AluJb SINE Alu 1 302 0 2317 99 3 0 chr1 253361999 253362302 -28831362 - AluSq SINE Alu -9 304 1 2088 125 10 3 chr1 253363135 253363430 -28830234 - AluSx SINE Alu -15 297 1 216 0 0 0 chr1 253363507 253363531 -28830133 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1923 92 0 16 chr1 253363533 253363783 -28829881 - AluSx SINE Alu -31 281 36 1549 171 24 0 chr1 253363796 253364048 -28829616 + AluJo SINE Alu 1 258 -54 2095 115 0 43 chr1 253364078 253364382 -28829282 + AluSx SINE Alu 5 295 -17 2249 110 3 0 chr1 253364492 253364791 -28828873 + AluSq SINE Alu 1 300 -13 733 253 0 0 chr1 253364835 253364997 -28828667 - FRAM SINE Alu -7 169 8 2002 145 3 7 chr1 253365017 253365320 -28828344 - AluSq SINE Alu -11 302 1 2084 105 7 7 chr1 253365341 253365635 -28828029 - AluSq SINE Alu -19 294 1 326 259 60 72 chr1 253365639 253365805 -28827859 + L1M4 LINE L1 4028 4191 -1955 2302 113 0 3 chr1 253365931 253366242 -28827422 - AluSp SINE Alu -3 310 1 714 209 17 23 chr1 253366553 253366725 -28826939 - FAM SINE Alu 0 175 5 2108 95 0 36 chr1 253366737 253367043 -28826621 - AluSg SINE Alu -15 295 1 2366 83 7 0 chr1 253367053 253367353 -28826311 - AluSx SINE Alu -10 302 1 265 270 20 10 chr1 253367766 253367866 -28825798 + (CGG)n Simple_repeat Simple_repeat 2 102 0 1854 132 13 30 chr1 253368828 253369131 -28824533 - AluJb SINE Alu -14 298 1 450 242 75 32 chr1 253369438 253369624 -28824040 + MIR SINE MIR 15 208 -54 234 0 0 0 chr1 253369638 253369664 -28824000 + (T)n Simple_repeat Simple_repeat 1 26 0 1395 165 4 4 chr1 253369673 253369903 -28823761 - AluSx SINE Alu -82 230 1 1646 273 144 22 chr1 253370237 253370965 -28822699 - L1MC4 LINE L1 -141 7901 7085 1791 111 0 0 chr1 253371167 253371402 -28822262 - AluY SINE Alu -76 235 1 844 143 0 15 chr1 253371691 253371824 -28821840 - FLAM_C SINE Alu 0 133 3 2449 84 3 0 chr1 253372184 253372493 -28821171 - AluSx SINE Alu -2 310 1 2270 91 30 7 chr1 253372506 253372803 -28820861 - AluSx SINE Alu -8 304 1 285 317 73 77 chr1 253372940 253373047 -28820617 + L2 LINE L2 2593 2699 -615 1804 156 0 47 chr1 253373047 253373218 -28820446 - AluJb SINE Alu -7 305 154 2387 105 0 0 chr1 253373218 253373522 -28820142 + AluSx SINE Alu 1 304 -8 1804 156 0 47 chr1 253373522 253373670 -28819994 - AluJb SINE Alu -158 154 1 285 317 73 77 chr1 253373670 253373821 -28819843 + L2 LINE L2 2699 2850 -464 460 204 65 99 chr1 253373893 253373961 -28819703 - L2 LINE L2 -1 3312 3243 2110 75 89 4 chr1 253373961 253374241 -28819423 - AluSq SINE Alu -9 304 1 460 204 65 99 chr1 253374241 253374373 -28819291 - L2 LINE L2 -70 3243 3119 237 274 0 0 chr1 253374557 253374619 -28819045 - L2 LINE L2 -420 2894 2833 858 119 156 6 chr1 253374740 253374900 -28818764 + L1MB8 LINE L1 5995 6178 0 2457 91 3 0 chr1 253374910 253375218 -28818446 + AluSx SINE Alu 1 309 -3 221 167 94 0 chr1 253375349 253375445 -28818219 + (TA)n Simple_repeat Simple_repeat 1 105 0 508 335 61 61 chr1 253375460 253375627 -28818037 + L2 LINE L2 2301 2467 -847 1856 130 44 14 chr1 253375627 253375920 -28817744 + AluSx SINE Alu 1 302 -10 508 335 61 61 chr1 253375920 253376275 -28817389 + L2 LINE L2 2466 2823 -491 1621 167 0 49 chr1 253376431 253376718 -28816946 - AluJo SINE Alu -23 289 17 2207 109 0 26 chr1 253376897 253377201 -28816463 - AluSx SINE Alu -16 296 1 216 0 0 0 chr1 253377278 253377302 -28816362 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1923 92 0 16 chr1 253377304 253377554 -28816110 - AluSx SINE Alu -31 281 36 1549 171 24 0 chr1 253377567 253377819 -28815845 + AluJo SINE Alu 1 258 -54 2104 115 0 43 chr1 253377849 253378154 -28815510 + AluSx SINE Alu 5 296 -16 2249 110 3 0 chr1 253378264 253378563 -28815101 + AluSq SINE Alu 1 300 -13 733 253 0 0 chr1 253378607 253378769 -28814895 - FRAM SINE Alu -7 169 8 2002 145 3 7 chr1 253378789 253379092 -28814572 - AluSq SINE Alu -11 302 1 2084 105 7 7 chr1 253379113 253379407 -28814257 - AluSq SINE Alu -19 294 1 326 259 60 72 chr1 253379411 253379577 -28814087 + L1M4 LINE L1 4028 4191 -1955 2302 113 0 3 chr1 253379703 253380014 -28813650 - AluSp SINE Alu -3 310 1 714 209 17 23 chr1 253380326 253380498 -28813166 - FAM SINE Alu 0 175 5 2108 95 0 36 chr1 253380510 253380816 -28812848 - AluSg SINE Alu -15 295 1 2438 80 3 0 chr1 253380826 253381127 -28812537 - AluSx SINE Alu -10 302 1 230 267 20 20 chr1 253381539 253381640 -28812024 + (CGG)n Simple_repeat Simple_repeat 2 102 0 1927 128 10 30 chr1 253382604 253382908 -28810756 - AluJb SINE Alu -14 298 1 450 242 75 32 chr1 253383215 253383401 -28810263 + MIR SINE MIR 15 208 -54 234 0 0 0 chr1 253383415 253383441 -28810223 + (T)n Simple_repeat Simple_repeat 1 26 0 1395 165 4 4 chr1 253383450 253383680 -28809984 - AluSx SINE Alu -82 230 1 1208 290 137 34 chr1 253384014 253384741 -28808923 - L1MC4 LINE L1 -112 7696 7007 1059 236 50 100 chr1 253384813 253385184 -28808480 - L1ME1 LINE L1 -1 6177 5830 2350 90 0 3 chr1 253385184 253385485 -28808179 - AluSc SINE Alu -9 300 1 1059 236 50 100 chr1 253385485 253385554 -28808110 - L1ME1 LINE L1 -348 5830 5759 258 161 81 0 chr1 253385546 253385608 -28808056 - L1MC4 LINE L1 -1033 7009 6943 * 2116 137 3 6 chr1 253385610 253385924 -28807740 - AluSq SINE Alu 0 313 1 1384 115 0 5 chr1 253385924 253386116 -28807548 - AluSg/x SINE Alu -10 302 112 542 201 234 32 chr1 253386117 253386271 -28807393 - L1MC4 LINE L1 -1096 6946 6762 2323 100 3 0 chr1 253386276 253386566 -28807098 - AluSp SINE Alu -22 291 1 391 316 38 68 chr1 253386636 253386782 -28806882 + MIR SINE MIR 15 153 -109 1792 179 7 3 chr1 253386782 253387072 -28806592 - AluJb SINE Alu -17 295 5 391 316 38 68 chr1 253387072 253387162 -28806502 + MIR SINE MIR 153 244 -18 2327 91 3 0 chr1 253387260 253387556 -28806108 - AluSp SINE Alu -16 297 1 1448 175 54 30 chr1 253387979 253388276 -28805388 - AluJo SINE Alu -8 304 1 2272 102 0 0 chr1 253388308 253388603 -28805061 + AluY SINE Alu 2 296 -15 527 223 0 0 chr1 253388754 253388857 -28804807 + LTR48-int LTR ERV1 6065 6167 -164 703 218 137 18 chr1 253388958 253389355 -28804309 + LTR48 LTR ERV1 10 486 -301 1836 127 57 13 chr1 253389446 253389745 -28803919 + AluJb SINE Alu 1 312 0 2393 98 3 0 chr1 253389748 253390054 -28803610 + AluSp SINE Alu 1 307 -6 495 244 64 6 chr1 253390117 253390273 -28803391 - HAL1 LINE L1 -295 2212 2048 768 224 119 55 chr1 253390312 253390599 -28803065 - HAL1 LINE L1 -1014 1493 1226 2429 97 0 0 chr1 253390599 253390908 -28802756 - AluSx SINE Alu -3 309 1 917 202 6 6 chr1 253390910 253391083 -28802581 - FAM SINE Alu -2 173 1 768 224 119 55 chr1 253391083 253391261 -28802403 - HAL1 LINE L1 -1281 1226 995 4041 116 14 2 chr1 253391289 253391909 -28801755 - L1PA14 LINE L1 -2 6159 5532 2203 120 0 0 chr1 253391913 253392213 -28801451 - AluSx SINE Alu -12 300 1 1956 154 48 0 chr1 253392291 253392584 -28801080 - AluSx SINE Alu -5 307 1 2162 115 0 3 chr1 253392679 253392974 -28800690 + AluSq SINE Alu 1 294 -19 444 288 40 0 chr1 253393471 253393596 -28800068 - MIR3 SINE MIR -3 205 76 1695 161 74 6 chr1 253393672 253393996 -28799668 - MER7A DNA MER2_type 0 346 3 210 191 0 0 chr1 253394692 253394739 -28798925 + (TATG)n Simple_repeat Simple_repeat 2 48 0 510 151 15 180 chr1 253395127 253395346 -28798318 - L1MA10 LINE L1 -1 6333 5986 306 282 0 0 chr1 253395370 253395441 -28798223 + MER2 DNA MER2_type 275 345 0 2077 67 0 37 chr1 253395773 253396043 -28797621 + AluY SINE Alu 33 292 -19 230 339 137 45 chr1 253396540 253397018 -28796646 + L2 LINE L2 2405 3001 -271 2261 108 3 0 chr1 253397018 253397313 -28796351 - AluSx SINE Alu -15 297 2 230 339 137 45 chr1 253397313 253397572 -28796092 + L2 LINE L2 3001 3235 -37 497 254 72 28 chr1 253399353 253399534 -28794130 - MIR SINE MIR -5 257 69 237 65 0 0 chr1 253399634 253399665 -28793999 + (TG)n Simple_repeat Simple_repeat 2 32 0 1202 174 33 0 chr1 253399998 253400240 -28793424 - L1MC3 LINE L1 -8 7777 7528 198 0 0 0 chr1 253400263 253400285 -28793379 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 947 114 0 0 chr1 253400285 253400416 -28793248 - AluSp SINE Alu -181 132 2 2333 82 7 10 chr1 253400508 253400679 -28792985 - AluSg SINE Alu -6 304 133 2380 67 0 13 chr1 253400679 253400977 -28792687 - AluY SINE Alu -17 294 1 2333 82 7 10 chr1 253400977 253401110 -28792554 - AluSg SINE Alu -177 133 1 40 59 0 0 chr1 253401177 253401245 -28792419 + AT_rich Low_complexity Low_complexity 1 68 0 2065 77 0 25 chr1 253401334 253401608 -28792056 + AluY SINE Alu 45 311 0 489 120 0 0 chr1 253401929 253402004 -28791660 + L1PA14 LINE L1 6084 6158 -3 2511 61 0 3 chr1 253402027 253402324 -28791340 + AluSc SINE Alu 1 296 -13 213 294 0 20 chr1 253402324 253402375 -28791289 - MIR SINE MIR -61 147 98 2214 104 0 0 chr1 253403943 253404247 -28789417 - AluSg SINE Alu 0 305 2 319 289 64 13 chr1 253405855 253406011 -28787653 + MIR3 SINE MIR 38 201 -7 28 29 0 0 chr1 253406263 253406298 -28787366 + AT_rich Low_complexity Low_complexity 1 35 0 1692 190 0 32 chr1 253406621 253406932 -28786732 + AluJo SINE Alu 1 301 -11 1886 128 30 24 chr1 253406937 253407235 -28786429 + AluSx SINE Alu 1 300 -12 423 0 0 0 chr1 253407248 253407295 -28786369 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 49 0 0 chr1 253409252 253409293 -28784371 + AT_rich Low_complexity Low_complexity 1 41 0 368 282 53 65 chr1 253410770 253410897 -28782767 - HAL1 LINE L1 -40 2467 2343 2104 121 7 0 chr1 253410897 253411187 -28782477 - AluSg SINE Alu -18 292 1 368 282 53 65 chr1 253411187 253411304 -28782360 - HAL1 LINE L1 -164 2343 2226 207 0 0 0 chr1 253411364 253411387 -28782277 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1719 176 0 27 chr1 253411416 253411711 -28781953 + AluJb SINE Alu 16 302 -10 2201 126 0 0 chr1 253411750 253412052 -28781612 - AluSg SINE Alu -4 306 5 529 265 35 98 chr1 253412069 253412435 -28781229 - HAL1 LINE L1 -525 1982 1640 1968 221 129 73 chr1 253412448 253412627 -28781037 - HAL1 LINE L1 -1092 1415 1248 2162 126 0 3 chr1 253412627 253412937 -28780727 - AluSg1 SINE Alu 0 309 1 1968 221 129 73 chr1 253412937 253413733 -28779931 - HAL1 LINE L1 -1259 1248 385 390 276 0 37 chr1 253413741 253413776 -28779888 - HAL1 LINE L1 -2339 168 133 2381 84 0 0 chr1 253413776 253414074 -28779590 - AluSx SINE Alu -14 298 1 390 276 0 37 chr1 253414074 253414201 -28779463 - HAL1 LINE L1 -2374 133 12 249 230 27 54 chr1 253416406 253416480 -28777184 - L2 LINE L2 0 3313 3242 2234 107 0 0 chr1 253417282 253417590 -28776074 - AluSc SINE Alu -1 308 1 1947 146 13 10 chr1 253418006 253418307 -28775357 - AluSx SINE Alu -10 302 1 1150 170 14 18 chr1 253418414 253418632 -28775032 - AluJb SINE Alu -12 300 84 293 77 0 0 chr1 253418633 253418672 -28774992 - AluJb SINE Alu -180 122 84 1557 190 55 11 chr1 253419153 253419427 -28774237 + AluJo SINE Alu 11 296 -16 2172 104 40 0 chr1 253419983 253420280 -28773384 - AluY SINE Alu -1 310 2 329 85 0 0 chr1 253420288 253420335 -28773329 - Alu SINE Alu -253 48 2 40 37 0 0 chr1 253421683 253421737 -28771927 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chr1 253422060 253422087 -28771577 + AT_rich Low_complexity Low_complexity 1 27 0 1042 126 0 0 chr1 253422149 253422292 -28771372 + FLAM_C SINE Alu 1 143 0 410 250 93 9 chr1 253422295 253422403 -28771261 - MIR SINE MIR -95 167 51 318 362 59 39 chr1 253423393 253423793 -28769871 + L2 LINE L2 2250 2752 -562 1633 185 7 21 chr1 253423793 253424080 -28769584 + AluJo SINE Alu 13 295 -17 318 362 59 39 chr1 253424080 253424142 -28769522 + L2 LINE L2 2752 2811 -503 1911 177 116 2 chr1 253424462 253425215 -28768449 + L1M4 LINE L1 4900 5738 -440 1490 159 91 11 chr1 253425269 253425533 -28768131 - AluJb SINE Alu -23 289 5 24 0 0 0 chr1 253425537 253425561 -28768103 + AT_rich Low_complexity Low_complexity 1 24 0 2162 125 3 10 chr1 253425757 253426068 -28767596 - AluSq SINE Alu -4 309 1 2060 127 3 3 chr1 253426070 253426369 -28767295 - AluSx SINE Alu -13 299 1 1605 148 115 4 chr1 253426479 253426757 -28766907 + AluSx SINE Alu 1 309 -3 1939 113 7 4 chr1 253427143 253427417 -28766247 - AluSx SINE Alu -37 275 1 781 153 170 4 chr1 253427418 253427653 -28766011 - Charlie1 DNA MER1_type -28 2733 2460 592 255 25 13 chr1 253427650 253427807 -28765857 - Charlie1 DNA MER1_type -2601 160 2 * 919 255 42 90 chr1 253428050 253428121 -28765543 - MLT1G LTR MaLR -133 409 336 2144 132 0 7 chr1 253428121 253428424 -28765240 - AluSx SINE Alu -11 301 1 919 255 42 90 chr1 253428424 253428780 -28764884 - MLT1G LTR MaLR -206 336 10 2140 128 0 0 chr1 253429274 253429570 -28764094 + AluSc SINE Alu 1 296 -13 320 314 78 37 chr1 253429806 253429997 -28763667 - L2 LINE L2 -976 2338 2140 433 272 130 11 chr1 253430280 253430464 -28763200 - MIR SINE MIR 0 262 57 345 293 40 0 chr1 253430478 253430628 -28763036 - L1ME LINE L1 -331 5790 5635 230 186 23 0 chr1 253431240 253431283 -28762381 - MIR SINE MIR -2 260 217 727 244 39 6 chr1 253431541 253431721 -28761943 - MER5A DNA MER1_type -3 186 1 578 100 0 0 chr1 253432422 253432502 -28761162 + MADE1 DNA Mariner 1 80 0 616 131 105 72 chr1 253433065 253433166 -28760498 - MER6 DNA MER2_type -1 864 755 2300 105 7 7 chr1 253433166 253433471 -28760193 + AluY SINE Alu 1 305 -6 616 131 105 72 chr1 253433471 253433522 -28760142 - MER6 DNA MER2_type -110 755 707 248 242 0 0 chr1 253433526 253433592 -28760072 + T-rich Low_complexity Low_complexity 1 66 0 2410 166 44 4 chr1 253433608 253434059 -28759605 - MER6A DNA MER2_type -539 66 -7 1734 187 21 0 chr1 253434864 253435153 -28758511 - AluJb SINE Alu -17 295 1 2114 81 42 14 chr1 253435177 253435461 -28758203 - AluSx SINE Alu -20 292 1 866 157 69 0 chr1 253435461 253435620 -28758044 + MER58B DNA MER1_type 171 340 -1 24 32 0 0 chr1 253435683 253435714 -28757950 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 253436857 253436878 -28756786 + AT_rich Low_complexity Low_complexity 1 21 0 545 256 222 10 chr1 253437475 253437678 -28755986 + MIR SINE MIR 3 248 -14 206 354 47 55 chr1 253439557 253439684 -28753980 + L2 LINE L2 2941 3066 -206 878 189 100 0 chr1 253440135 253440325 -28753339 + MER3 DNA MER1_type 1 209 0 500 211 0 0 chr1 253440489 253440593 -28753071 + U13 snRNA snRNA 1 104 0 276 30 0 0 chr1 253441297 253441330 -28752334 + (CA)n Simple_repeat Simple_repeat 2 34 0 447 190 13 0 chr1 253441553 253441632 -28752032 + Tigger3(Golem) DNA MER2_type 1 80 -2949 653 182 0 0 chr1 253441747 253441857 -28751807 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 1922 142 6 39 chr1 253442405 253442716 -28750948 + AluSx SINE Alu 1 301 -11 2302 99 10 13 chr1 253443036 253443348 -28750316 - AluSp SINE Alu -1 312 2 1725 174 10 23 chr1 253443387 253443691 -28749973 + AluJo SINE Alu 1 300 -12 2197 107 0 3 chr1 253444198 253444496 -28749168 - AluSx SINE Alu -13 299 3 26 0 0 0 chr1 253445671 253445697 -28747967 + AT_rich Low_complexity Low_complexity 1 26 0 314 342 53 46 chr1 253445735 253445887 -28747777 - MIR SINE MIR -48 214 62 308 310 57 32 chr1 253446174 253446332 -28747332 + MIR SINE MIR 66 227 -35 22 56 0 0 chr1 253446525 253446561 -28747103 + AT_rich Low_complexity Low_complexity 1 36 0 1933 154 7 0 chr1 253446908 253447200 -28746464 + AluJb SINE Alu 1 294 -18 1003 163 56 6 chr1 253448952 253449130 -28744534 + AluJo SINE Alu 1 187 -125 25 0 0 0 chr1 253449133 253449158 -28744506 + AT_rich Low_complexity Low_complexity 1 25 0 180 299 161 7 chr1 253451301 253451438 -28742226 + L2 LINE L2 2804 2961 -311 582 266 75 60 chr1 253451507 253451841 -28741823 - L1MC4 LINE L1 -139 7903 7565 2053 245 40 27 chr1 253451884 253452366 -28741298 - L1MC4 LINE L1 -980 7062 6569 2138 131 0 0 chr1 253452366 253452672 -28740992 + AluSq SINE Alu 1 306 -7 2053 245 40 27 chr1 253452672 253452784 -28740880 - L1MC4 LINE L1 -1473 6569 6460 495 224 84 0 chr1 253452967 253453110 -28740554 - L1MC4 LINE L1 -372 7670 7516 189 330 126 65 chr1 253453133 253453363 -28740301 + L2 LINE L2 3027 3270 -2 206 314 71 0 chr1 253453585 253453655 -28740009 - L2 LINE L2 -2 3270 3196 856 209 23 40 chr1 253453784 253453859 -28739805 + MER5A DNA MER1_type 2 77 -112 2000 146 10 3 chr1 253453859 253454161 -28739503 + AluSq SINE Alu 1 304 -9 856 209 23 40 chr1 253454161 253454262 -28739402 + MER5A DNA MER1_type 77 175 -14 630 199 89 7 chr1 253455169 253455315 -28738349 - MER5B DNA MER1_type -16 162 5 214 186 21 27 chr1 253456160 253456316 -28737348 + (TA)n Simple_repeat Simple_repeat 1 155 0 224 312 86 0 chr1 253457121 253457214 -28736450 + MIR3 SINE MIR 93 193 -15 2049 125 7 0 chr1 253457309 253457604 -28736060 - AluSq SINE Alu -16 297 1 2077 130 0 3 chr1 253457980 253458273 -28735391 + AluSx SINE Alu 1 292 -20 386 335 133 35 chr1 253460046 253460587 -28733077 + L2 LINE L2 2047 2640 -674 207 0 0 0 chr1 253460962 253460985 -28732679 + (A)n Simple_repeat Simple_repeat 1 23 0 331 300 10 0 chr1 253460995 253461095 -28732569 - L2 LINE L2 -248 3024 2924 212 271 220 8 chr1 253461337 253461455 -28732209 + MIR SINE MIR 116 258 -4 214 197 258 15 chr1 253462464 253462530 -28731134 - L2 LINE L2 -7 3306 3225 29 0 0 0 chr1 253462908 253462937 -28730727 + AT_rich Low_complexity Low_complexity 1 29 0 2721 232 193 25 chr1 253463087 253464095 -28729569 + L2 LINE L2 1262 2468 -846 1972 141 7 10 chr1 253464095 253464399 -28729265 - AluJb SINE Alu -9 303 1 2721 232 193 25 chr1 253464399 253464480 -28729184 + L2 LINE L2 2468 2534 -780 479 138 181 0 chr1 253464493 253464587 -28729077 + MER45A DNA AcHobo 5 115 -63 3017 164 27 17 chr1 253464600 253465202 -28728462 - L1MB2 LINE L1 -10 6161 5554 194 0 39 0 chr1 253465202 253465228 -28728436 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 675 224 6 26 chr1 253465236 253465392 -28728272 - U3 snRNA snRNA 0 217 65 1471 219 0 17 chr1 253465437 253465724 -28727940 - AluJo SINE Alu -30 282 1 1867 158 7 0 chr1 253465742 253466034 -28727630 + AluSx SINE Alu 1 294 -18 414 195 0 0 chr1 253466035 253466112 -28727552 + MER45A DNA AcHobo 102 178 0 1109 228 195 82 chr1 253466133 253466823 -28726841 + L2 LINE L2 2579 3313 0 299 87 22 0 chr1 253466972 253467018 -28726646 - MLT2C2 LTR ERVL -2 462 416 1018 121 0 16 chr1 253467041 253467414 -28726250 + (TA)n Simple_repeat Simple_repeat 1 366 0 337 272 0 22 chr1 253467521 253467613 -28726051 - L1MC4 LINE L1 -1339 6703 6614 249 98 0 0 chr1 253467616 253467657 -28726007 + (TA)n Simple_repeat Simple_repeat 2 42 0 1262 245 101 14 chr1 253467660 253468097 -28725567 - MLT2B1 LTR ERVL -45 475 1 222 118 0 0 chr1 253471218 253471252 -28722412 + (T)n Simple_repeat Simple_repeat 1 34 0 861 143 23 0 chr1 253471252 253471385 -28722279 - AluSq/x SINE Alu -176 136 1 1036 138 12 6 chr1 253471596 253471756 -28721908 + FRAM SINE Alu 14 174 -2 21 57 0 0 chr1 253473157 253473192 -28720472 + AT_rich Low_complexity Low_complexity 1 35 0 2308 105 3 3 chr1 253473212 253473516 -28720148 - AluSx SINE Alu -8 304 1 2317 57 4 0 chr1 253473908 253474234 -28719430 + AluY SINE Alu 1 327 0 2251 98 0 22 chr1 253474266 253474583 -28719081 - AluY SINE Alu -1 310 1 21 0 0 0 chr1 253474687 253474708 -28718956 + AT_rich Low_complexity Low_complexity 1 21 0 195 304 177 0 chr1 253475275 253475354 -28718310 - MIR SINE MIR -105 157 65 580 313 82 0 chr1 253475509 253475691 -28717973 + MIR SINE MIR 54 250 -12 773 233 6 12 chr1 253475983 253476146 -28717518 + AluJo SINE Alu 121 282 -30 2681 42 0 0 chr1 253476151 253476458 -28717206 - AluY SINE Alu -4 307 1 1417 144 0 60 chr1 253476637 253476887 -28716777 + AluJo SINE Alu 1 235 -77 2094 128 13 3 chr1 253476931 253477229 -28716435 - AluSq SINE Alu -12 301 1 198 0 0 0 chr1 253477235 253477257 -28716407 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2238 79 4 4 chr1 253477259 253477539 -28716125 - AluY SINE Alu -31 280 1 182 265 20 0 chr1 253477731 253477780 -28715884 - MIR SINE MIR -125 137 88 9515 31 3 0 chr1 253478104 253480040 -28713624 - L1PA3 LINE L1 0 6155 4235 1087 105 0 84 chr1 253480040 253480224 -28713440 - AluSp SINE Alu -9 304 137 1657 186 0 14 chr1 253480354 253480645 -28713019 - AluJb SINE Alu -21 291 5 438 269 36 54 chr1 253482074 253482396 -28711268 - L1MEd LINE L1 -4890 1229 1010 1237 190 49 102 chr1 253482451 253482933 -28710731 - L1MC3 LINE L1 0 7785 5782 * 1524 159 81 11 chr1 253482928 253483300 -28710364 - L1MDa LINE L1 -3920 2620 2223 * 1819 205 98 68 chr1 253483299 253483419 -28710245 - L1MDa LINE L1 -5030 1510 1395 2184 95 0 3 chr1 253483419 253483730 -28709934 - AluY SINE Alu 0 310 1 1819 205 98 68 chr1 253483730 253483785 -28709879 - L1MDa LINE L1 -5145 1395 1343 2346 85 3 3 chr1 253483785 253484078 -28709586 - AluY SINE Alu -18 293 1 1819 205 98 68 chr1 253484078 253484606 -28709058 - L1MDa LINE L1 -5197 1343 784 924 310 40 68 chr1 253484699 253484834 -28708830 - L1MEd LINE L1 -5285 834 697 1976 158 3 0 chr1 253484834 253485132 -28708532 - AluSx SINE Alu -13 299 1 924 310 40 68 chr1 253485132 253485729 -28707935 - L1MEd LINE L1 -5422 697 123 316 135 0 19 chr1 253486152 253486204 -28707460 + (GA)n Simple_repeat Simple_repeat 1 51 0 763 138 0 14 chr1 253486204 253486349 -28707315 + (GGAA)n Simple_repeat Simple_repeat 4 146 0 1436 231 142 120 chr1 253487291 253487868 -28705796 - MLT1G LTR MaLR -2 588 4 2150 123 0 7 chr1 253488096 253488405 -28705259 + AluSg SINE Alu 1 307 -3 1982 123 11 0 chr1 253490006 253490291 -28703373 - AluSx SINE Alu -24 288 1 1329 260 79 42 chr1 253490299 253490992 -28702672 + HAL1b LINE L1 83 801 -547 399 236 118 31 chr1 253491147 253491342 -28702322 - MLT1K LTR MaLR -246 342 131 332 280 45 38 chr1 253491523 253491712 -28701952 - MIR SINE MIR -42 220 36 31 82 0 0 chr1 253491880 253491953 -28701711 + AT_rich Low_complexity Low_complexity 1 73 0 419 371 74 4 chr1 253492122 253492351 -28701313 - MIR SINE MIR -6 256 12 2235 111 0 13 chr1 253493341 253493511 -28700153 - AluSq SINE Alu -10 303 137 2298 101 0 0 chr1 253493511 253493818 -28699846 - AluY SINE Alu -4 307 1 2235 111 0 13 chr1 253493818 253493954 -28699710 - AluSq SINE Alu -176 137 1 777 289 23 43 chr1 253494161 253494417 -28699247 - MIR SINE MIR -10 252 2 2431 81 3 0 chr1 253494737 253495044 -28698620 - AluSp SINE Alu -5 308 1 219 69 0 0 chr1 253495091 253495120 -28698544 + (A)n Simple_repeat Simple_repeat 1 29 0 1312 140 0 5 chr1 253495566 253495759 -28697905 + AluY SINE Alu 106 297 -14 571 298 111 18 chr1 253495771 253495996 -28697668 + MIR SINE MIR 3 248 -14 2095 147 3 0 chr1 253496042 253496342 -28697322 + AluSx SINE Alu 1 301 -11 589 109 173 0 chr1 253496927 253497037 -28696627 - MIR SINE MIR 0 262 134 1776 161 21 25 chr1 253497352 253497637 -28696027 - AluJb SINE Alu -28 284 1 2262 61 27 27 chr1 253498005 253498299 -28695365 + AluSq SINE Alu 1 294 -19 262 188 145 0 chr1 253499423 253499492 -28694172 - L1M4 LINE L1 -1367 4779 4701 238 184 0 0 chr1 253499521 253499570 -28694094 + Alu SINE Alu 252 300 -2 653 72 0 0 chr1 253499879 253499962 -28693702 + AluY SINE Alu 1 83 -228 1760 86 5 0 chr1 253499962 253500182 -28693482 - AluSp SINE Alu -91 222 2 429 206 0 11 chr1 253500185 253500277 -28693387 + L1M4 LINE L1 4830 4920 -1226 1077 84 0 0 chr1 253500277 253500408 -28693256 + AluSc SINE Alu 1 131 -178 1920 118 63 0 chr1 253500412 253500699 -28692965 + AluY SINE Alu 1 305 -6 2317 99 3 0 chr1 253501080 253501384 -28692280 - AluSq SINE Alu -8 305 1 2114 106 17 0 chr1 253502217 253502510 -28691154 - AluSq SINE Alu -15 298 1 745 138 156 6 chr1 253502520 253502680 -28690984 - L1MB8 LINE L1 0 6178 5995 534 271 152 76 chr1 253502801 253503179 -28690485 + L2 LINE L2 2832 3251 -62 2080 75 89 7 chr1 253503179 253503460 -28690204 + AluSq SINE Alu 1 304 -9 534 271 152 76 chr1 253503460 253503528 -28690136 + L2 LINE L2 3251 3312 -1 353 331 100 64 chr1 253503548 253503751 -28689913 - L2 LINE L2 -400 2914 2695 1835 149 0 50 chr1 253503751 253503899 -28689765 + AluJb SINE Alu 1 126 -186 2414 102 0 0 chr1 253503899 253504203 -28689461 - AluSx SINE Alu -8 304 1 1835 149 0 50 chr1 253504203 253504375 -28689289 + AluJb SINE Alu 126 305 -7 353 331 100 64 chr1 253504375 253504482 -28689182 - L2 LINE L2 -619 2695 2593 2271 90 30 7 chr1 253504619 253504918 -28688746 + AluSx SINE Alu 1 306 -6 2394 87 3 0 chr1 253504931 253505240 -28688424 + AluSx SINE Alu 1 310 -2 390 322 70 44 chr1 253505428 253505600 -28688064 - L2 LINE L2 -977 2337 2152 842 143 0 15 chr1 253505600 253505733 -28687931 + FLAM_C SINE Alu 3 133 0 390 322 70 44 chr1 253505733 253505858 -28687806 - L2 LINE L2 -1162 2152 2032 2081 121 0 0 chr1 253506021 253506330 -28687334 + AluY SINE Alu 1 309 0 333 0 0 0 chr1 253506329 253506366 -28687298 + (CA)n Simple_repeat Simple_repeat 2 38 0 2188 131 0 0 chr1 253506559 253506857 -28686807 + AluSg SINE Alu 1 298 -12 211 182 0 0 chr1 253507013 253507046 -28686618 + (TG)n Simple_repeat Simple_repeat 1 33 0 556 243 64 40 chr1 253507092 253507265 -28686399 - MER5A DNA MER1_type -12 177 1 223 178 44 0 chr1 253507818 253507863 -28685801 - MER5B DNA MER1_type -1 177 131 207 0 0 0 chr1 253507876 253507899 -28685765 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 372 206 0 0 chr1 253507931 253507999 -28685665 + MER5B DNA MER1_type 38 105 -73 22 0 0 0 chr1 253508056 253508078 -28685586 + AT_rich Low_complexity Low_complexity 1 22 0 699 226 121 0 chr1 253509264 253509454 -28684210 - MIR SINE MIR -1 261 49 2314 101 0 7 chr1 253509933 253510240 -28683424 + AluSg SINE Alu 1 305 -5 1030 229 78 55 chr1 253510358 253510703 -28682961 + LTR16A LTR ERVL 97 449 -1 682 277 71 21 chr1 253510793 253511031 -28682633 + MIR SINE MIR 2 251 -11 2408 63 0 0 chr1 253511687 253511974 -28681690 - AluY SINE Alu -24 287 1 4622 23 0 0 chr1 253512367 253512898 -28680766 + L1PA3 LINE L1 5625 6155 0 28 61 0 0 chr1 253512954 253513003 -28680661 + AT_rich Low_complexity Low_complexity 1 49 0 446 304 97 25 chr1 253513213 253513450 -28680214 + L2 LINE L2 2238 2491 -823 1572 98 0 0 chr1 253513484 253513687 -28679977 - AluSg/x SINE Alu -7 303 101 2705 142 67 27 chr1 253513841 253514363 -28679301 + MER4E LTR ERV1 211 753 -26 1982 146 3 3 chr1 253514553 253514847 -28678817 - AluSx SINE Alu -18 294 1 321 200 0 0 chr1 253515453 253515513 -28678151 - MIR3 SINE MIR -18 190 131 558 124 45 0 chr1 253515615 253515704 -28677960 - FRAM SINE Alu -17 159 67 525 103 92 0 chr1 253515715 253515802 -28677862 + AluSc SINE Alu 214 308 -1 21 71 0 0 chr1 253515810 253515852 -28677812 + AT_rich Low_complexity Low_complexity 1 42 0 2033 137 10 0 chr1 253516212 253516512 -28677152 + AluSq SINE Alu 1 303 -10 2349 84 3 0 chr1 253516847 253517145 -28676519 - AluY SINE Alu -12 299 1 24 0 0 0 chr1 253517285 253517309 -28676355 + AT_rich Low_complexity Low_complexity 1 24 0 221 221 26 78 chr1 253517561 253517638 -28676026 + MER5A DNA MER1_type 2 74 -115 2272 92 3 0 chr1 253517641 253517934 -28675730 + AluSx SINE Alu 1 294 -18 916 114 8 0 chr1 253518180 253518312 -28675352 - FRAM SINE Alu 0 40 1 739 219 30 63 chr1 253518864 253519101 -28674563 - L2 LINE L2 0 3313 3085 212 302 63 0 chr1 253519473 253519536 -28674128 - MIR SINE MIR -85 177 111 461 289 33 27 chr1 253520674 253520873 -28672791 + MIR SINE MIR 15 213 -49 2157 117 10 7 chr1 253521807 253522106 -28671558 - AluSx SINE Alu -10 302 3 2039 135 7 3 chr1 253522116 253522413 -28671251 - AluSq SINE Alu -15 298 1 322 302 87 0 chr1 253523167 253523293 -28670371 - L2 LINE L2 -217 3055 2919 1336 199 82 42 chr1 253523415 253523608 -28670056 - Charlie1 DNA MER1_type -2 2759 2575 4362 43 4 0 chr1 253523608 253524142 -28669522 + L1PA7 LINE L1 5615 6150 -4 1336 199 82 42 chr1 253524142 253524349 -28669315 - Charlie1 DNA MER1_type -186 2575 2343 2315 89 0 0 chr1 253527472 253527765 -28665899 + AluY SINE Alu 18 310 -1 210 143 0 0 chr1 253527965 253528000 -28665664 + (CA)n Simple_repeat Simple_repeat 1 35 0 1613 72 64 16 chr1 253528110 253528360 -28665304 - L1MA1 LINE L1 -6 6296 6035 2002 95 33 4 chr1 253528932 253529233 -28664431 - AluSg SINE Alu 0 309 1 269 232 0 0 chr1 253530055 253530111 -28663553 + L1M3a LINE L1 5 60 -5895 254 375 0 42 chr1 253530152 253530389 -28663275 + L1M3a LINE L1 226 452 -5503 4287 234 91 26 chr1 253530829 253532540 -28661124 + L1M3f LINE L1 535 2347 -3981 298 287 20 20 chr1 253532541 253532643 -28661021 + FLAM_A SINE Alu 1 77 -56 4711 170 74 97 chr1 253532656 253532858 -28660806 + L1M3f LINE L1 2358 2563 -3765 903 85 31 0 chr1 253532858 253532987 -28660677 + AluSg/x SINE Alu 174 306 -4 4711 170 74 97 chr1 253532987 253533598 -28660066 + L1M3f LINE L1 2563 3187 -3141 2519 58 0 0 chr1 253533598 253533891 -28659773 + AluSc SINE Alu 1 293 -16 4711 170 74 97 chr1 253533891 253534497 -28659167 + L1M3f LINE L1 3187 3870 -2458 1407 152 27 8 chr1 253534590 253534847 -28658817 - MER2 DNA MER2_type 0 345 84 941 170 48 0 chr1 253534849 253535014 -28658650 - AluJb SINE Alu -16 296 124 394 219 10 31 chr1 253535014 253535110 -28658554 - MER2 DNA MER2_type -251 94 1 1337 175 68 34 chr1 253535484 253535776 -28657888 + AluJo SINE Alu 1 302 -10 1892 162 3 17 chr1 253536966 253537263 -28656401 - AluJb SINE Alu -14 298 6 246 205 0 0 chr1 253537532 253537571 -28656093 + AluJ/monomer SINE Alu 1 39 -269 22 0 0 0 chr1 253537715 253537737 -28655927 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1 253538212 253538255 -28655409 + AT_rich Low_complexity Low_complexity 1 43 0 207 114 0 0 chr1 253590051 253590086 -28603578 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1819 177 3 0 chr1 253590230 253590529 -28603135 + AluJo SINE Alu 12 311 -1 1781 142 2 116 chr1 253591430 253591889 -28601775 - MST-int LTR MaLR -1140 511 3 2465 88 77 11 chr1 253591891 253592243 -28601421 - THE1C LTR MaLR 0 375 1 237 231 58 110 chr1 253592243 253592406 -28601258 - L1M4 LINE L1 -1442 4704 4549 1396 141 103 12 chr1 253592447 253592792 -28600872 - L1MA9 LINE L1 -5 6307 5898 212 215 16 83 chr1 253592923 253593044 -28600620 + T-rich Low_complexity Low_complexity 4 116 0 4681 60 3 0 chr1 253593144 253593740 -28599924 - L1P LINE L1 -5547 599 2 * 5501 195 95 5 chr1 253593739 253595039 -28598625 - L1MA9 LINE L1 -815 5331 3914 2572 47 0 0 chr1 253595560 253595856 -28597808 - AluY SINE Alu -15 296 1 2407 129 30 30 chr1 253596139 253596503 -28597161 + THE1B LTR MaLR 1 364 0 255 288 12 0 chr1 253596659 253596739 -28596925 - MIR SINE MIR -7 255 175 345 314 89 33 chr1 253596838 253597175 -28596489 + L2 LINE L2 2380 2735 -579 1595 286 53 12 chr1 253597210 253597920 -28595744 + ERVL LTR ERVL 3010 3805 -1849 371 294 29 77 chr1 253597901 253598071 -28595593 + ERVL LTR ERVL 4194 4355 -1409 * 746 138 0 0 chr1 253598074 253598190 -28595474 + MLT1B LTR MaLR 1 116 -274 5623 90 13 19 chr1 253598294 253598442 -28595222 + L1PB2 LINE L1 697 844 -5307 8059 20 9 0 chr1 253598442 253599370 -28594294 + L1PA2 LINE L1 5220 6155 0 5623 90 13 19 chr1 253599370 253600190 -28593474 + L1PB2 LINE L1 844 6144 -7 971 212 100 124 chr1 253601064 253601129 -28592535 - MLT1G1 LTR MaLR 0 588 523 2238 105 3 7 chr1 253601129 253601433 -28592231 + AluSp SINE Alu 2 304 -9 971 212 100 124 chr1 253601433 253601901 -28591763 - MLT1G1 LTR MaLR -65 523 20 1233 123 0 0 chr1 253601901 253602064 -28591600 - AluSg/x SINE Alu -16 296 134 2456 80 0 0 chr1 253602064 253602363 -28591301 - AluY SINE Alu -12 299 1 986 193 87 17 chr1 253602453 253602700 -28590964 - MLT1H LTR MaLR -244 305 1 6075 120 19 7 chr1 253604594 253605483 -28588181 + THE1C-int LTR MaLR 674 1573 -7 2305 115 23 62 chr1 253605488 253605878 -28587786 + THE1C LTR MaLR 1 375 0 343 379 66 14 chr1 253605916 253606278 -28587386 + L1ME LINE L1 4777 5157 -989 310 296 74 26 chr1 253606297 253606599 -28587065 + L1ME LINE L1 5268 5584 -2224 334 299 15 29 chr1 253606609 253606746 -28586918 + L1ME LINE L1 5685 5819 -302 1577 163 47 20 chr1 253606755 253607055 -28586609 + AluJo SINE Alu 1 308 -4 23 0 0 0 chr1 253607127 253607150 -28586514 + AT_rich Low_complexity Low_complexity 1 23 0 3932 230 38 39 chr1 253607286 253608319 -28585345 + L1PA12 LINE L1 12 1043 -6538 4495 85 19 10 chr1 253608601 253609187 -28584477 + L1PA11 LINE L1 5583 6173 -1 1188 158 10 20 chr1 253609213 253609416 -28584248 + MER3 DNA MER1_type 9 209 0 372 325 24 18 chr1 253609851 253610020 -28583644 + L2 LINE L2 2595 2764 -550 * 381 322 25 35 chr1 253610015 253610214 -28583450 + L2 LINE L2 2560 2756 -558 4620 176 39 15 chr1 253610400 253610429 -28583235 - L1MB2 LINE L1 -2 6169 6142 2301 71 0 34 chr1 253610429 253610759 -28582905 + AluY SINE Alu 1 320 0 4620 176 39 15 chr1 253610759 253612192 -28581472 - L1MB2 LINE L1 -29 6142 4667 1232 179 157 16 chr1 253612334 253612787 -28580877 - Charlie2 DNA MER1_type -116 2746 2230 231 193 303 46 chr1 253612812 253612921 -28580743 - Charlie2 DNA MER1_type -2498 284 148 236 224 0 0 chr1 253613372 253613421 -28580243 + L2 LINE L2 3264 3312 -1 705 248 168 0 chr1 253613667 253613881 -28579783 + MIR SINE MIR 13 262 0 2530 64 0 0 chr1 253613884 253614181 -28579483 - AluY SINE Alu -14 297 1 228 245 113 38 chr1 253614603 253614709 -28578955 + L1MC/D LINE L1 5709 5822 -1986 264 292 52 0 chr1 253615169 253615265 -28578399 + L3b LINE CR1 1350 1450 -133 29 70 0 0 chr1 253615377 253615434 -28578230 + AT_rich Low_complexity Low_complexity 1 57 0 23629 157 21 20 chr1 253619253 253621111 -28572553 + L1P4 LINE L1 948 2803 -3371 2347 100 0 6 chr1 253621111 253621422 -28572242 + AluSc SINE Alu 1 309 0 23629 157 21 20 chr1 253621422 253624075 -28569589 + L1P4 LINE L1 2803 5463 -711 320 187 15 37 chr1 253624202 253624336 -28569328 + CT-rich Low_complexity Low_complexity 3 133 0 435 92 0 0 chr1 253624812 253624877 -28568787 + (CA)n Simple_repeat Simple_repeat 2 66 0 1894 160 10 0 chr1 253625391 253625684 -28567980 + AluSx SINE Alu 2 297 -15 2106 164 46 59 chr1 253625834 253626272 -28567392 - MSTB1 LTR MaLR 0 432 1 1488 118 4 18 chr1 253626272 253626501 -28567163 - MSTB1-int LTR MaLR 0 1651 1426 237 219 137 27 chr1 253626559 253626632 -28567032 - MIR SINE MIR -65 197 117 381 213 6 65 chr1 253626796 253626953 -28566711 - MER3 DNA MER1_type 0 209 1 1530 167 60 71 chr1 253627621 253627986 -28565678 + MLT1A1 LTR MaLR 1 361 -4 191 253 133 0 chr1 253628041 253628116 -28565548 + L2 LINE L2 1984 2068 -1246 225 297 0 0 chr1 253629008 253629072 -28564592 + (CTG)n Simple_repeat Simple_repeat 3 66 0 1103 182 0 0 chr1 253629231 253629396 -28564268 + FRAM SINE Alu 2 166 0 392 276 24 24 chr1 253629842 253629965 -28563699 + L1ME LINE L1 5468 5590 -531 241 286 50 92 chr1 253632096 253632215 -28561449 - L2 LINE L2 -17 3255 3142 420 264 9 9 chr1 253632335 253632441 -28561223 - L2 LINE L2 -5 3308 3203 500 317 0 7 chr1 253632448 253632590 -28561074 + MIR SINE MIR 25 165 -97 288 0 0 0 chr1 253632806 253632838 -28560826 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr1 253632941 253632963 -28560701 + AT_rich Low_complexity Low_complexity 1 22 0 2308 89 0 0 chr1 253633025 253633316 -28560348 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr1 253633327 253633348 -28560316 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 253633751 253633774 -28559890 + AT_rich Low_complexity Low_complexity 1 23 0 1508 164 105 65 chr1 253633792 253634116 -28559548 + MER1B DNA MER1_type 1 337 0 216 0 0 0 chr1 253634146 253634170 -28559494 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1485 184 38 19 chr1 253634182 253634449 -28559215 - AluJo SINE Alu -40 272 1 1792 187 0 10 chr1 253634887 253635187 -28558477 + AluJb SINE Alu 1 297 -15 1155 195 171 60 chr1 253635288 253635843 -28557821 - Charlie2 DNA MER1_type -1 2861 2245 651 175 224 9 chr1 253635894 253636114 -28557550 - Charlie2a DNA MER1_type -1838 1024 757 4008 143 29 46 chr1 253636114 253636897 -28556767 - LTR1 LTR ERV1 0 785 16 1295 231 269 29 chr1 253636992 253637545 -28556119 - Charlie2a DNA MER1_type -2176 686 1 607 235 47 80 chr1 253637590 253637803 -28555861 + MIR SINE MIR 56 261 -1 180 125 0 0 chr1 253637807 253637839 -28555825 + (TTA)n Simple_repeat Simple_repeat 2 33 0 240 281 196 50 chr1 253638244 253638443 -28555221 + MIR SINE MIR 35 262 0 397 245 10 0 chr1 253639151 253639249 -28554415 - MER103 DNA DNA -46 120 22 2782 44 3 0 chr1 253640794 253641113 -28552551 + L1PA4 LINE L1 5836 6155 0 1345 115 62 0 chr1 253641828 253642037 -28551627 + MER50 LTR ERV1 1 222 -512 * 1602 131 6 86 chr1 253642024 253642337 -28551327 + MER50 LTR ERV1 447 734 0 874 199 0 6 chr1 253642555 253642711 -28550953 - FRAM SINE Alu -18 158 4 2281 95 0 10 chr1 253643461 253643755 -28549909 - AluSg SINE Alu -19 291 1 358 162 0 27 chr1 253644033 253644107 -28549557 - Tigger5 DNA MER2_type -168 2155 2084 891 225 6 17 chr1 253644140 253644313 -28549351 - Tigger5 DNA MER2_type -2152 171 1 185 271 21 0 chr1 253644524 253644572 -28549092 + MIR SINE MIR 90 138 -124 897 184 6 12 chr1 253644572 253644740 -28548924 - MER3 DNA MER1_type 0 209 43 878 302 62 41 chr1 253644814 253645140 -28548524 - L2 LINE L2 -245 3068 2730 2242 118 0 0 chr1 253645140 253645429 -28548235 + AluSg SINE Alu 1 289 -21 878 302 62 41 chr1 253645429 253645595 -28548069 - L2 LINE L2 -583 2730 2569 767 325 164 30 chr1 253645601 253646776 -28546888 + L2 LINE L2 1701 3046 -226 261 0 0 0 chr1 253647044 253647073 -28546591 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 370 309 73 0 chr1 253648687 253648823 -28544841 - L2 LINE L2 0 3313 3168 995 144 43 21 chr1 253648830 253649017 -28544647 - Tigger7 DNA MER2_type 0 2487 2297 185 211 0 0 chr1 253649087 253649125 -28544539 + L2 LINE L2 3276 3313 0 24 32 0 0 chr1 253649303 253649334 -28544330 + AT_rich Low_complexity Low_complexity 1 31 0 253 256 61 12 chr1 253649614 253649696 -28543968 + MIR3 SINE MIR 121 206 -2 344 267 105 0 chr1 253650622 253650708 -28542956 + MIR3 SINE MIR 87 181 -27 209 321 0 0 chr1 253650965 253651021 -28542643 - L2 LINE L2 -6 3266 3211 5663 68 25 0 chr1 253651266 253651939 -28541725 + LTR8 LTR ERV1 1 690 -1 273 271 33 124 chr1 253652111 253652286 -28541378 - L2 LINE L2 -792 2522 2367 1571 184 6 41 chr1 253652286 253652602 -28541062 + AluJo SINE Alu 1 305 -7 273 271 33 124 chr1 253652602 253652636 -28541028 - L2 LINE L2 -947 2367 2332 22 35 0 0 chr1 253652657 253652686 -28540978 + AT_rich Low_complexity Low_complexity 1 29 0 805 244 70 67 chr1 253652918 253653319 -28540345 + MLT1J LTR MaLR 102 503 -8 221 364 141 19 chr1 253654049 253654255 -28539409 + L2 LINE L2 2495 2725 -589 385 327 149 43 chr1 253654297 253654646 -28539018 - L2 LINE L2 0 3272 2887 205 330 101 9 chr1 253655408 253655517 -28538147 + L2 LINE L2 2973 3091 -181 979 136 6 47 chr1 253655522 253655691 -28537973 - FRAM SINE Alu -11 165 4 280 284 95 0 chr1 253655735 253655830 -28537834 + L2 LINE L2 3100 3203 -69 357 333 85 74 chr1 253655833 253656293 -28537371 - L2 LINE L2 0 3272 2808 1722 229 28 20 chr1 253656949 253657342 -28536322 - MSTD LTR MaLR 0 396 1 24 0 0 0 chr1 253658145 253658169 -28535495 + AT_rich Low_complexity Low_complexity 1 24 0 1106 174 15 15 chr1 253659215 253659411 -28534253 - MER20 DNA MER1_type -17 202 7 2976 196 110 54 chr1 253659550 253659645 -28534019 - L1ME2 LINE L1 -9 6155 6067 247 132 0 0 chr1 253659645 253659683 -28533981 - MER3 DNA MER1_type -160 49 12 2976 196 110 54 chr1 253659683 253660414 -28533250 - L1ME2 LINE L1 -97 6067 5239 351 0 0 0 chr1 253660414 253660453 -28533211 + (TG)n Simple_repeat Simple_repeat 2 40 0 2976 196 110 54 chr1 253660453 253660499 -28533165 - L1ME2 LINE L1 -925 5239 5197 203 250 62 16 chr1 253660986 253661050 -28532614 - MIR3 SINE MIR -6 202 136 2019 178 71 15 chr1 253661670 253662064 -28531600 + MSTB LTR MaLR 10 425 -1 193 363 115 22 chr1 253662440 253662622 -28531042 + L2 LINE L2 3105 3303 -10 1795 151 41 3 chr1 253663210 253663502 -28530162 - AluSx SINE Alu -9 303 1 2124 123 0 0 chr1 253663511 253663804 -28529860 - AluSx SINE Alu -3 309 17 393 317 58 27 chr1 253663916 253664140 -28529524 - HAL1 LINE L1 -914 1593 1363 2249 274 89 50 chr1 253664154 253665341 -28528323 - L1MEd LINE L1 -4884 1235 3 244 280 34 51 chr1 253665613 253665731 -28527933 + MIR SINE MIR 86 201 -61 4850 146 50 54 chr1 253666211 253666763 -28526901 - L1MB2 LINE L1 -1 6170 5618 2429 78 0 0 chr1 253666763 253667058 -28526606 - AluY SINE Alu -16 295 1 4850 146 50 54 chr1 253667058 253667607 -28526057 - L1MB2 LINE L1 -553 5618 5069 529 260 144 84 chr1 253667735 253668029 -28525635 + LTR67 LTR ERVL 13 353 -204 1339 245 93 39 chr1 253668029 253668514 -28525150 + MLT1J LTR MaLR 1 511 0 529 260 144 84 chr1 253668514 253668731 -28524933 + LTR67 LTR ERVL 353 555 -2 253 268 36 0 chr1 253669795 253669851 -28523813 + L2 LINE L2 3163 3220 -52 2249 115 0 3 chr1 253669869 253670181 -28523483 - AluSx SINE Alu -1 311 1 326 312 150 30 chr1 253670296 253670562 -28523102 + L2 LINE L2 3016 3313 0 188 33 0 33 chr1 253670652 253670682 -28522982 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 233 344 0 0 chr1 253671087 253671148 -28522516 - MIR SINE MIR -112 96 36 2215 122 0 0 chr1 253671228 253671524 -28522140 - AluSx SINE Alu -16 296 1 325 300 49 94 chr1 253671783 253672210 -28521454 + MLT1K LTR MaLR 126 533 -55 474 322 15 25 chr1 253672637 253672836 -28520828 + MIR3 SINE MIR 3 199 -9 218 185 0 37 chr1 253673877 253673931 -28519733 + MIR SINE MIR 209 260 -2 1962 154 7 0 chr1 253674045 253674343 -28519321 - AluJo SINE Alu -12 300 1 2129 121 10 7 chr1 253674357 253674663 -28519001 - AluSx SINE Alu -5 307 1 243 88 0 0 chr1 253675050 253675084 -28518580 + (CAG)n Simple_repeat Simple_repeat 2 35 0 184 278 28 56 chr1 253675407 253675479 -28518185 - L3 LINE CR1 -21 1556 1487 410 203 42 70 chr1 253675786 253675929 -28517735 - L1MC4 LINE L1 0 8042 7904 318 292 60 161 chr1 253676739 253676878 -28516786 - L2 LINE L2 -22 3250 3099 1493 167 0 4 chr1 253676878 253677117 -28516547 + AluJb SINE Alu 1 238 -74 318 292 60 161 chr1 253677117 253677357 -28516307 - L2 LINE L2 -173 3099 2909 248 308 60 26 chr1 253677617 253677734 -28515930 - MIR SINE MIR -119 143 23 1756 297 103 49 chr1 253678373 253679937 -28513727 + L1MEc LINE L1 8 1659 -4737 900 136 8 0 chr1 253679937 253680069 -28513595 + FLAM_C SINE Alu 1 133 0 194 96 0 96 chr1 253680093 253680145 -28513519 + (A)n Simple_repeat Simple_repeat 1 47 0 464 315 56 28 chr1 253681251 253681502 -28512162 + L2 LINE L2 2837 3094 -178 2451 89 0 0 chr1 253681861 253682165 -28511499 - AluSg SINE Alu -6 304 1 684 256 28 17 chr1 253682677 253682853 -28510811 - MIR SINE MIR -38 224 47 331 283 73 73 chr1 253683159 253683261 -28510403 - MIR SINE MIR -55 207 106 1837 120 54 11 chr1 253683261 253683537 -28510127 + AluSx SINE Alu 1 288 -24 331 283 73 73 chr1 253683537 253683639 -28510025 - MIR SINE MIR -155 107 3 22 0 0 0 chr1 253684020 253684042 -28509622 + AT_rich Low_complexity Low_complexity 1 22 0 2373 102 0 3 chr1 253685663 253685976 -28507688 - AluSx SINE Alu 0 312 1 851 225 73 5 chr1 253686613 253686804 -28506860 - L1MC1 LINE L1 -13 6320 6117 214 256 0 0 chr1 253687401 253687444 -28506220 + polypyrimidine Low_complexity Low_complexity 1 43 0 929 220 55 29 chr1 253687503 253687874 -28505790 + MER63 DNA MER1_type 1 442 -619 486 187 56 19 chr1 253687896 253688003 -28505661 + MER63 DNA MER1_type 952 1062 0 1894 121 83 41 chr1 253688965 253689304 -28504360 - L1MB5 LINE L1 -9 6165 5813 27 0 0 0 chr1 253689304 253689331 -28504333 + AT_rich Low_complexity Low_complexity 1 27 0 1227 220 113 52 chr1 253690086 253690509 -28503155 - MLT1J2 LTR MaLR -1 449 1 1385 169 20 20 chr1 253692118 253692366 -28501298 + AluJo SINE Alu 44 291 -21 278 212 15 0 chr1 253692622 253692688 -28500976 + L2 LINE L2 3247 3313 0 243 0 0 0 chr1 253693254 253693281 -28500383 + (CA)n Simple_repeat Simple_repeat 1 27 0 2073 115 18 3 chr1 253693281 253693567 -28500097 - AluSq SINE Alu -21 292 3 1774 132 56 35 chr1 253693571 253693859 -28499805 - AluSq SINE Alu -19 294 1 225 108 0 0 chr1 253693927 253693964 -28499700 + (ATG)n Simple_repeat Simple_repeat 2 38 0 2111 90 0 4 chr1 253695708 253695975 -28497689 + AluSc SINE Alu 1 266 -43 23 0 0 0 chr1 253696630 253696653 -28497011 + AT_rich Low_complexity Low_complexity 1 23 0 198 171 0 0 chr1 253697050 253697091 -28496573 + (TA)n Simple_repeat Simple_repeat 1 41 0 2240 112 3 0 chr1 253697093 253697396 -28496268 - AluSx SINE Alu -8 304 1 1582 187 77 62 chr1 253697514 253697984 -28495680 - MER34C LTR ERV1 -72 513 37 2278 109 0 31 chr1 253698511 253698832 -28494832 - AluSx SINE Alu -1 311 1 757 312 51 4 chr1 253698911 253699145 -28494519 + MLT1K LTR MaLR 333 577 -11 2130 127 27 0 chr1 253699365 253699665 -28493999 - AluSx SINE Alu -4 308 1 6301 85 32 1 chr1 253700511 253701562 -28492102 + L1PA10 LINE L1 5071 6151 -17 357 242 117 17 chr1 253702080 253702200 -28491464 + L2 LINE L2 3182 3313 0 263 292 90 28 chr1 253702256 253702400 -28491264 + MIR SINE MIR 31 183 -79 264 325 51 0 chr1 253703960 253704077 -28489587 + L2 LINE L2 3150 3272 0 434 261 25 25 chr1 253704480 253704599 -28489065 - MIR3 SINE MIR -2 206 88 220 314 136 7 chr1 253705197 253705337 -28488327 + MER5B DNA MER1_type 1 158 -20 469 189 412 0 chr1 253705669 253705822 -28487842 - MER20 DNA MER1_type 0 219 4 283 234 23 78 chr1 253707013 253707141 -28486523 - L1ME4a LINE L1 -50 6071 5951 758 341 49 13 chr1 253707573 253708025 -28485639 + L2 LINE L2 2292 2759 -555 302 301 60 60 chr1 253708345 253708511 -28485153 + L2 LINE L2 3107 3272 0 216 329 0 14 chr1 253708678 253708748 -28484916 + MIR SINE MIR 21 89 -173 2005 133 0 3 chr1 253708883 253709169 -28484495 - AluSx SINE Alu -19 293 9 340 313 0 0 chr1 253709177 253709289 -28484375 + MIR SINE MIR 150 261 -1 25 0 0 0 chr1 253710160 253710185 -28483479 + AT_rich Low_complexity Low_complexity 1 25 0 493 294 94 55 chr1 253710645 253710954 -28482710 + MLT1J LTR MaLR 35 355 -156 2066 204 97 29 chr1 253711251 253711799 -28481865 + MLT1E LTR MaLR 8 592 -1 315 0 0 0 chr1 253712220 253712255 -28481409 + (CA)n Simple_repeat Simple_repeat 1 35 0 231 36 0 0 chr1 253712254 253712282 -28481382 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 522 326 13 30 chr1 253712917 253713150 -28480514 + LTR16C LTR ERVL 252 480 -11 223 338 128 43 chr1 253713160 253713570 -28480094 + L2 LINE L2 565 1049 -2265 1874 163 0 13 chr1 253713570 253713870 -28479794 - AluJo SINE Alu -14 298 3 223 338 128 43 chr1 253713870 253714090 -28479574 + L2 LINE L2 1049 1249 -2065 271 319 0 50 chr1 253714169 253714288 -28479376 - L2 LINE L2 -6 3307 3195 1933 182 95 13 chr1 253715142 253715522 -28478142 - MSTB LTR MaLR 0 426 16 2044 99 10 43 chr1 253715593 253715897 -28477767 - AluSx SINE Alu -18 294 1 453 345 6 6 chr1 253716792 253716960 -28476704 + L2 LINE L2 3146 3313 0 1203 174 43 16 chr1 253718201 253718408 -28475256 + MLT1A1 LTR MaLR 1 254 -111 7378 130 55 20 chr1 253718408 253719643 -28474021 + MER52C LTR ERV1 1 1278 0 1203 174 43 16 chr1 253719643 253719759 -28473905 + MLT1A1 LTR MaLR 254 365 0 311 331 40 11 chr1 253719831 253720006 -28473658 - L1MC4a LINE L1 -1876 5932 5753 327 304 92 0 chr1 253720167 253720374 -28473290 - L1MC4a LINE L1 -664 5500 5275 355 256 128 41 chr1 253720396 253720815 -28472849 - L1M LINE L1 -804 5358 4903 261 303 92 23 chr1 253720963 253721181 -28472483 + L1 LINE L1 3253 3485 -2661 6613 69 13 65 chr1 253721280 253723164 -28470500 - SVA Other Other -551 1382 1 454 48 0 0 chr1 253723166 253723228 -28470436 - AluY SINE Alu -10 302 241 317 121 15 30 chr1 253723228 253723294 -28470370 - LTR1 LTR ERV1 -720 65 1 315 29 0 0 chr1 253723409 253723444 -28470220 - MER52C LTR ERV1 -151 1127 1093 2503 75 0 7 chr1 253724057 253724364 -28469300 + AluSq SINE Alu 1 305 -8 1375 168 0 0 chr1 253725011 253725231 -28468433 - AluSg/x SINE Alu -16 296 77 2057 110 7 0 chr1 253726359 253726669 -28466995 - AluSx SINE Alu 0 312 1 1408 220 78 27 chr1 253727326 253727843 -28465821 + MLT1E LTR MaLR 1 593 0 520 265 40 0 chr1 253728270 253728421 -28465243 - MIR SINE MIR -8 254 98 2538 155 34 0 chr1 253728870 253729284 -28464380 + MSTA LTR MaLR 1 428 0 4891 117 13 15 chr1 253729900 253730581 -28463083 + Tigger1 DNA MER2_type 788 1469 -949 1859 151 10 10 chr1 253730581 253730893 -28462771 + AluJb SINE Alu 1 312 0 4891 117 13 15 chr1 253730893 253730961 -28462703 + Tigger1 DNA MER2_type 1469 1536 -882 720 164 9 0 chr1 253730951 253731067 -28462597 + Tigger1 DNA MER2_type 2302 2418 0 * 1963 53 0 0 chr1 253731101 253731327 -28462337 + AluY SINE Alu 75 300 -11 2188 73 0 7 chr1 253732451 253732726 -28460938 - AluY SINE Alu -3 308 36 471 289 92 57 chr1 253732919 253733073 -28460591 + L1 LINE L1 3684 3831 -2315 1962 142 7 3 chr1 253733073 253733369 -28460295 - AluSx SINE Alu -13 299 3 471 289 92 57 chr1 253733369 253733719 -28459945 + L1 LINE L1 3831 4223 -1923 3172 148 26 6 chr1 253733719 253734260 -28459404 - L1MA4A LINE L1 -4 6299 5748 471 289 92 57 chr1 253734260 253734471 -28459193 + L1 LINE L1 4223 4425 -1721 283 217 7 16 chr1 253734481 253734580 -28459084 + L1MEd LINE L1 1266 1482 -4927 1912 163 38 0 chr1 253734581 253734901 -28458763 + MER7A DNA MER2_type 1 330 -16 262 235 15 0 chr1 253734919 253734987 -28458677 + L1MEd LINE L1 1484 1552 -5011 724 266 54 12 chr1 253735421 253735662 -28458002 + MIR SINE MIR 12 262 0 4624 144 22 47 chr1 253736133 253737541 -28456123 - pTR5 LTR ERV1 0 2438 741 2316 103 0 10 chr1 253739556 253739867 -28453797 + AluSg SINE Alu 1 308 -2 631 121 20 0 chr1 253740259 253740358 -28453306 - L1MA3 LINE L1 0 6305 6205 2126 122 12 15 chr1 253740426 253740762 -28452902 - L1MA3 LINE L1 -92 6213 5879 246 128 0 0 chr1 253740894 253740933 -28452731 + (T)n Simple_repeat Simple_repeat 1 39 0 262 198 54 63 chr1 253741738 253741849 -28451815 - MIR SINE MIR 0 262 153 2144 134 0 0 chr1 253741849 253742141 -28451523 - AluSx SINE Alu -20 292 1 261 0 0 0 chr1 253742191 253742220 -28451444 + (TA)n Simple_repeat Simple_repeat 2 30 0 195 42 0 0 chr1 253742447 253742471 -28451193 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2137 130 0 0 chr1 253742471 253742755 -28450909 - AluSx SINE Alu -28 284 1 1230 170 0 27 chr1 253742826 253743049 -28450615 - AluJb SINE Alu -45 267 51 225 205 0 0 chr1 253743058 253743097 -28450567 - MIR SINE MIR -4 258 220 922 206 0 11 chr1 253743100 253743284 -28450380 - FRAM SINE Alu -1 175 1 311 211 161 21 chr1 253743284 253743403 -28450261 - MIR SINE MIR -62 146 58 1381 236 14 18 chr1 253743419 253743703 -28449961 - AluJb SINE Alu -19 283 1 1128 153 4 94 chr1 253744165 253744400 -28449264 + MER20 DNA MER1_type 4 217 -2 1644 197 62 3 chr1 253745226 253745551 -28448113 + MER2 DNA MER2_type 1 344 0 1319 132 5 0 chr1 253745771 253745961 -28447703 - AluSp SINE Alu -19 294 104 236 35 0 0 chr1 253745961 253745990 -28447674 + Alu SINE Alu 73 101 -201 248 111 22 0 chr1 253746428 253746473 -28447191 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 746 241 125 13 chr1 253746479 253746703 -28446961 - MIR SINE MIR -13 249 1 201 338 12 38 chr1 253746795 253746875 -28446789 + L3 LINE CR1 1478 1555 -22 2005 152 3 0 chr1 253746949 253747252 -28446412 + AluSx SINE Alu 1 304 -8 199 324 92 78 chr1 253747417 253747701 -28445963 + L2 LINE L2 2980 3267 -5 216 250 117 0 chr1 253748133 253748193 -28445471 - MIR SINE MIR -109 99 33 283 282 18 55 chr1 253748208 253748318 -28445346 + L2 LINE L2 2986 3091 -181 1150 141 0 11 chr1 253749706 253749883 -28443781 + AluJb SINE Alu 125 299 -13 226 227 0 0 chr1 253751017 253751061 -28442603 - MLT1H LTR MaLR -6 589 546 1649 126 0 0 chr1 253751061 253751300 -28442364 + L1MB3 LINE L1 5943 6181 -2 1715 142 3 67 chr1 253751308 253751639 -28442025 + AluSx SINE Alu 1 310 -2 322 251 108 90 chr1 253751723 253752057 -28441607 - MLT1H LTR MaLR -186 356 17 949 256 49 4 chr1 253752155 253752401 -28441263 + MIR SINE MIR 6 262 0 446 214 36 9 chr1 253752540 253752652 -28441012 - L3b LINE CR1 -221 1362 1248 569 270 25 78 chr1 253753440 253753644 -28440020 - L2 LINE L2 -1 3312 3120 323 336 70 8 chr1 253754200 253754328 -28439336 + L2 LINE L2 3137 3272 0 1643 148 19 21 chr1 253754524 253754865 -28438799 - MER61C LTR ERV1 0 434 1 4597 150 78 37 chr1 253754965 253755374 -28438290 + MER4D LTR ERV1 1 392 -511 2243 104 7 0 chr1 253755374 253755672 -28437992 - AluSg SINE Alu -10 300 1 4597 150 78 37 chr1 253755672 253756129 -28437535 + MER4D LTR ERV1 392 903 0 905 300 25 67 chr1 253756322 253756682 -28436982 + LTR16A LTR ERVL 106 450 0 4022 145 41 23 chr1 253756806 253757510 -28436154 + MER50 LTR ERV1 1 717 -17 300 219 97 112 chr1 253758161 253758357 -28435307 + L1ME LINE L1 5602 5794 -327 252 302 80 14 chr1 253758377 253758589 -28435075 + L1ME4a LINE L1 5748 5973 -148 2560 152 58 6 chr1 253758792 253759259 -28434405 + L1MB3 LINE L1 5692 6182 -1 193 312 175 46 chr1 253761161 253761549 -28432115 - L2 LINE L2 -26 3246 2809 207 194 69 56 chr1 253762317 253762389 -28431275 + MIR SINE MIR 141 213 -49 237 308 14 41 chr1 253762448 253762594 -28431070 + L2 LINE L2 2948 3089 -183 829 222 57 40 chr1 253763712 253764009 -28429655 - MLT1J LTR MaLR 0 511 210 285 182 0 0 chr1 253764009 253764064 -28429600 + T-rich Low_complexity Low_complexity 2 56 0 505 243 50 20 chr1 253764468 253764620 -28429044 - MLT1J LTR MaLR -272 174 31 364 149 16 25 chr1 253765414 253765535 -28428129 + (TA)n Simple_repeat Simple_repeat 2 121 0 1284 261 162 33 chr1 253765787 253766545 -28427119 + HAL1 LINE L1 689 1544 -963 720 215 0 0 chr1 253766558 253766688 -28426976 - FLAM_A SINE Alu -3 130 1 3282 192 52 6 chr1 253766689 253767725 -28425939 + L1MB4 LINE L1 4845 5929 -251 3531 147 77 67 chr1 253767726 253768633 -28425031 - MER11A LTR ERVK 0 1266 351 2094 119 11 0 chr1 253768737 253769023 -28424641 - AluSq SINE Alu -24 289 1 850 264 158 25 chr1 253769023 253769467 -28424197 + HAL1 LINE L1 1315 1817 -690 269 121 52 0 chr1 253769578 253769636 -28424028 + HAL1 LINE L1 2019 2079 -428 2249 113 0 3 chr1 253770007 253770308 -28423356 + AluSx SINE Alu 1 300 -12 973 173 73 17 chr1 253771203 253771382 -28422282 + MER5A DNA MER1_type 1 189 0 511 243 59 20 chr1 253771776 253771928 -28421736 - MIR SINE MIR -37 225 68 2237 121 0 0 chr1 253772108 253772406 -28421258 + AluSx SINE Alu 1 298 -14 1694 177 31 127 chr1 253772900 253773358 -28420306 - MLT2D LTR ERVL 0 414 1 284 367 0 0 chr1 253773428 253773526 -28420138 + L2 LINE L2 3174 3271 -1 420 261 113 28 chr1 253774034 253774176 -28419488 - MER5A DNA MER1_type -21 168 15 282 167 0 0 chr1 253774388 253774430 -28419234 + MADE1 DNA Mariner 1 42 -38 355 121 17 0 chr1 253774574 253774632 -28419032 + MADE1 DNA Mariner 22 80 0 2493 129 55 79 chr1 253774849 253775320 -28418344 - LTR32 LTR ERVL 0 471 12 631 228 0 0 chr1 253775819 253775942 -28417722 - MER94 DNA DNA -11 123 1 346 301 25 91 chr1 253776004 253776203 -28417461 - MER5A DNA MER1_type -2 187 2 252 278 42 0 chr1 253776209 253776281 -28417383 + MIR SINE MIR 54 128 -134 1314 258 101 10 chr1 253776281 253776688 -28416976 - MLT1J2 LTR MaLR -3 447 4 655 265 147 62 chr1 253778074 253778409 -28415255 - MLT1J2 LTR MaLR -63 383 5 475 246 14 29 chr1 253778412 253778550 -28415114 + MIR SINE MIR 127 262 0 190 411 18 27 chr1 253779121 253779233 -28414431 + MIR SINE MIR 34 144 -64 1926 255 18 26 chr1 253779242 253779735 -28413929 + MLT2F LTR ERVL 2 490 -173 1794 218 62 81 chr1 253779735 253780280 -28413384 - MLT1F LTR MaLR 0 542 8 599 224 39 50 chr1 253780289 253780334 -28413330 + MLT2F LTR ERVL 487 531 -132 210 91 0 0 chr1 253780334 253780367 -28413297 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 599 224 39 50 chr1 253780367 253780500 -28413164 + MLT2F LTR ERVL 531 663 0 2220 120 0 22 chr1 253780540 253780857 -28412807 + AluSx SINE Alu 1 310 -2 193 196 59 20 chr1 253781207 253781258 -28412406 - L3b LINE CR1 0 1583 1531 947 147 46 3 chr1 253781317 253781495 -28412169 + L1M1 LINE L1 5554 5738 -454 558 279 109 26 chr1 253781572 253781801 -28411863 - MIR SINE MIR 0 262 15 201 39 0 0 chr1 253782110 253782136 -28411528 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 282 29 0 0 chr1 253782135 253782170 -28411494 + (CA)n Simple_repeat Simple_repeat 1 35 0 471 231 18 77 chr1 253783092 253783261 -28410403 + MER69 DNA AcHobo 2 2509 -17 271 219 281 18 chr1 253784763 253784877 -28408787 - MER5A DNA MER1_type 0 189 46 269 224 142 82 chr1 253784776 253784910 -28408754 + MER5A DNA MER1_type 46 187 -2 * 641 288 31 35 chr1 253785521 253785681 -28407983 + MIR SINE MIR 33 193 -69 2872 139 31 35 chr1 253785681 253786193 -28407471 - LTR54 LTR ERV1 0 510 1 641 288 31 35 chr1 253786193 253786261 -28407403 + MIR SINE MIR 193 260 -2 5309 89 13 0 chr1 253786418 253787123 -28406541 - L1MA2 LINE L1 0 6304 5591 2159 121 36 12 chr1 253788233 253788565 -28405099 + MER2 DNA MER2_type 1 340 -5 200 271 239 15 chr1 253788694 253788874 -28404790 - MIR3 SINE MIR -39 223 1 1930 147 17 23 chr1 253789032 253789331 -28404333 - AluJo SINE Alu -15 297 1 898 65 0 0 chr1 253789933 253790076 -28403588 + AluY SINE Alu 176 318 0 1908 181 0 0 chr1 253790597 253790901 -28402763 + AluJb SINE Alu 1 304 -8 22 35 0 0 chr1 253791069 253791098 -28402566 + AT_rich Low_complexity Low_complexity 1 29 0 455 254 18 35 chr1 253791159 253791273 -28402391 - FRAM SINE Alu -13 163 52 2132 126 3 0 chr1 253793362 253793663 -28400001 + AluSg SINE Alu 1 302 -8 289 267 44 52 chr1 253793891 253794026 -28399638 - MIR SINE MIR 0 262 129 15874 134 16 23 chr1 253794051 253795860 -28397804 - Tigger1 DNA MER2_type -1 2417 598 2048 143 3 0 chr1 253795860 253796146 -28397518 - AluSx SINE Alu -25 287 1 15874 134 16 23 chr1 253796146 253796597 -28397067 - Tigger1 DNA MER2_type -1820 598 171 1917 155 3 25 chr1 253796597 253796913 -28396751 + AluJo SINE Alu 1 309 -3 15874 134 16 23 chr1 253796913 253797083 -28396581 - Tigger1 DNA MER2_type -2247 171 1 307 263 8 51 chr1 253797387 253797505 -28396159 + LTR67 LTR ERVL 432 544 -13 1761 185 3 6 chr1 253797578 253797891 -28395773 - AluJo SINE Alu 0 312 1 208 288 55 55 chr1 253798130 253798203 -28395461 + MIR SINE MIR 77 149 -59 445 170 137 16 chr1 253798406 253798588 -28395076 - Charlie7 DNA MER1_type -5 2607 2404 2352 129 71 5 chr1 253798633 253799029 -28394635 - MSTA LTR MaLR -6 422 1 1930 144 0 43 chr1 253799099 253799425 -28394239 + AluJb SINE Alu 1 312 0 2817 34 15 0 chr1 253799635 253799962 -28393702 + MER11C LTR ERVK 1 332 -739 1247 134 57 0 chr1 253799962 253800156 -28393508 - LTR12 LTR ERV1 -133 581 377 277 255 31 20 chr1 253800157 253800255 -28393409 - LTR30 LTR ERV1 -80 642 544 4044 160 42 48 chr1 253800255 253801221 -28392443 - pTR5 LTR ERV1 -413 2025 745 6048 71 3 0 chr1 253801221 253801964 -28391700 + MER11C LTR ERVK 327 1071 0 237 298 12 71 chr1 253801965 253802049 -28391615 + L2 LINE L2 3227 3305 -8 22 0 0 0 chr1 253803952 253803974 -28389690 + AT_rich Low_complexity Low_complexity 1 22 0 570 235 144 46 chr1 253804173 253804479 -28389185 - L1ME4a LINE L1 -263 5858 5523 982 189 94 5 chr1 253805174 253805375 -28388289 + AluJo SINE Alu 87 305 -7 2532 232 115 42 chr1 253806445 253807470 -28386194 - L1MDa LINE L1 -5291 1249 30 234 136 0 0 chr1 253807511 253807555 -28386109 + (CA)n Simple_repeat Simple_repeat 1 44 0 255 31 0 0 chr1 253807888 253807920 -28385744 + (TG)n Simple_repeat Simple_repeat 2 33 0 244 330 19 47 chr1 253809291 253809397 -28384267 + L3 LINE CR1 1069 1171 -406 * 598 284 91 18 chr1 253809387 253809629 -28384035 - MIR SINE MIR -2 260 4 15103 189 21 17 chr1 253810069 253813417 -28380247 + L1PA16 LINE L1 1852 5215 -1654 2256 125 3 0 chr1 253813417 253813729 -28379935 + AluSq SINE Alu 1 313 0 15103 189 21 17 chr1 253813729 253815391 -28378273 + L1PA16 LINE L1 5215 6869 0 1555 101 0 57 chr1 253815395 253815623 -28378041 + AluSc SINE Alu 82 296 -13 1116 222 33 19 chr1 253815730 253816095 -28377569 - MER69 DNA AcHobo -579 1947 1578 2431 145 0 47 chr1 253816122 253816529 -28377135 + L1PB4 LINE L1 5769 6156 0 194 286 26 26 chr1 253816582 253816659 -28377005 - MIR SINE MIR -21 241 165 280 270 10 70 chr1 253816806 253816906 -28376758 + MIR SINE MIR 2 95 -167 218 224 82 0 chr1 253816959 253817008 -28376656 - MIR SINE MIR -109 99 47 327 343 52 8 chr1 253817208 253817342 -28376322 - L2 LINE L2 -11 3261 3122 1309 251 122 44 chr1 253817628 253818191 -28375473 - L2 LINE L2 -5 3308 2657 2064 107 0 24 chr1 253818191 253818540 -28375124 - AluSx SINE Alu 0 342 1 1309 251 122 44 chr1 253818540 253818791 -28374873 - L2 LINE L2 -656 2657 2427 255 264 76 76 chr1 253818824 253818968 -28374696 - MIR3 SINE MIR -46 162 19 3316 151 46 0 chr1 253819128 253819692 -28373972 - L1MC3 LINE L1 -7 7778 7189 265 268 0 14 chr1 253819692 253819763 -28373901 - MLT1F1 LTR MaLR -442 125 56 432 188 40 0 chr1 253819774 253819875 -28373789 - L1MC3 LINE L1 -678 7107 7003 2569 174 11 47 chr1 253819960 253820490 -28373174 + L1MB8 LINE L1 5651 6161 -17 1902 150 0 4 chr1 253820683 253820963 -28372701 + AluSx SINE Alu 1 279 -33 1253 28 22 17 chr1 253820972 253821150 -28372514 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 284 68 0 23 chr1 253821150 253821194 -28372470 + (GGAA)n Simple_repeat Simple_repeat 1 43 0 279 392 13 25 chr1 253822474 253822632 -28371032 + L2 LINE L2 2898 3053 -219 4060 231 111 59 chr1 253824456 253825366 -28368298 + L1M4 LINE L1 16 877 -5769 2295 116 3 0 chr1 253825366 253825676 -28367988 + AluSp SINE Alu 1 311 -2 4060 231 111 59 chr1 253825676 253826216 -28367448 + L1M4 LINE L1 877 1387 -5259 186 43 0 0 chr1 253826216 253826239 -28367425 + (GA)n Simple_repeat Simple_repeat 2 24 0 4060 231 111 59 chr1 253826239 253826609 -28367055 + L1M4 LINE L1 1387 1736 -4910 1586 226 7 0 chr1 253826609 253826901 -28366763 + AluJb SINE Alu 2 295 -17 4060 231 111 59 chr1 253826901 253827069 -28366595 + L1M4 LINE L1 1736 2103 -4543 303 122 0 0 chr1 253829033 253829082 -28364582 + (TG)n Simple_repeat Simple_repeat 2 50 0 538 289 25 55 chr1 253829627 253829762 -28363902 + MIR SINE MIR 22 151 -111 1372 211 109 45 chr1 253829762 253829951 -28363713 + LTR2 LTR ERV1 1 176 -273 249 33 0 0 chr1 253829951 253829981 -28363683 + (TTCTG)n Simple_repeat Simple_repeat 4 33 0 1372 211 109 45 chr1 253829981 253830213 -28363451 + LTR2 LTR ERV1 176 449 0 538 289 25 55 chr1 253830213 253830278 -28363386 + MIR SINE MIR 151 216 -46 631 200 100 80 chr1 253830278 253830478 -28363186 - MER63A DNA MER1_type -6 204 1 224 279 15 15 chr1 253831131 253831199 -28362465 + CT-rich Low_complexity Low_complexity 1 68 0 2744 118 3 3 chr1 253831308 253831672 -28361992 - THE1B LTR MaLR 0 364 1 4207 110 47 98 chr1 253831774 253831963 -28361701 + LTR1 LTR ERV1 1 198 -587 2489 58 10 10 chr1 253831963 253832274 -28361390 + AluY SINE Alu 1 311 0 4207 110 47 98 chr1 253832274 253832911 -28360753 + LTR1 LTR ERV1 198 785 0 275 303 67 22 chr1 253833740 253833829 -28359835 - L2 LINE L2 -22 3250 3158 402 204 11 32 chr1 253834178 253834271 -28359393 + L2 LINE L2 3212 3302 -11 207 100 0 0 chr1 253834271 253834301 -28359363 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2337 87 0 7 chr1 253834384 253834683 -28358981 + AluSx SINE Alu 1 297 -15 635 332 16 16 chr1 253834820 253835064 -28358600 - L2 LINE L2 -518 2796 2553 1729 142 0 81 chr1 253835145 253835455 -28358209 + AluJb SINE Alu 1 285 -27 441 0 0 0 chr1 253835455 253835504 -28358160 + (CA)n Simple_repeat Simple_repeat 2 50 0 1806 135 34 27 chr1 253835549 253835845 -28357819 - AluSx SINE Alu -14 298 1 1227 211 20 76 chr1 253835857 253836231 -28357433 + MLT2D LTR ERVL 66 414 0 252 313 0 0 chr1 253836506 253836573 -28357091 - MIR3 SINE MIR -20 188 122 233 224 119 15 chr1 253837355 253837422 -28356242 + LTR67 LTR ERVL 484 557 0 317 244 109 54 chr1 253837734 253837889 -28355775 - L1MC4a LINE L1 -1877 5931 5759 1878 194 78 11 chr1 253837889 253838260 -28355404 + MSTD LTR MaLR 1 396 0 317 244 109 54 chr1 253838260 253838325 -28355339 - L1MC4a LINE L1 -2049 5759 5699 855 275 26 4 chr1 253842046 253842275 -28351389 - MIR SINE MIR -17 245 12 615 262 21 21 chr1 253842436 253842627 -28351037 + MER117 DNA MER1_type 4 194 -3 1052 269 124 36 chr1 253843151 253843650 -28350014 + L3 LINE CR1 859 1401 -176 360 218 73 27 chr1 253843696 253843806 -28349858 + MER103 DNA DNA 5 119 -47 239 284 86 68 chr1 253843940 253844102 -28349562 + L3 LINE CR1 1396 1560 -17 1458 186 90 32 chr1 253844461 253844805 -28348859 + MLT1A1 LTR MaLR 1 364 -1 844 289 44 16 chr1 253845361 253845762 -28347902 + L2 LINE L2 2767 3180 -133 456 179 13 0 chr1 253846225 253846303 -28347361 + L2 LINE L2 3182 3260 -12 1957 135 44 0 chr1 253847135 253847432 -28346232 - AluSg SINE Alu 0 310 1 288 0 0 0 chr1 253847523 253847555 -28346109 + (CA)n Simple_repeat Simple_repeat 2 33 0 441 0 0 0 chr1 253847908 253847957 -28345707 + (CA)n Simple_repeat Simple_repeat 1 49 0 223 265 147 0 chr1 253848772 253848840 -28344824 - L3 LINE CR1 -15 1562 1485 185 156 0 22 chr1 253848967 253849012 -28344652 + (CA)n Simple_repeat Simple_repeat 1 44 0 938 204 6 6 chr1 253849043 253849210 -28344454 + MER5B DNA MER1_type 11 177 -1 679 336 80 41 chr1 253849238 253849726 -28343938 - L2 LINE L2 0 3313 2807 746 250 66 9 chr1 253849752 253849980 -28343684 - LTR33A LTR ERVL -13 510 270 642 238 149 10 chr1 253850541 253850843 -28342821 + L1ME4a LINE L1 5643 5986 -135 319 326 130 7 chr1 253851236 253851374 -28342290 + MIR SINE MIR 34 188 -74 2177 92 0 0 chr1 253851380 253851768 -28341896 + AluY SINE Alu 1 388 0 21 0 0 0 chr1 253851915 253851936 -28341728 + AT_rich Low_complexity Low_complexity 1 21 0 9287 86 3 7 chr1 253852404 253854398 -28339266 - L1PA7 LINE L1 -3 6151 4164 2235 192 10 12 chr1 253854398 253854788 -28338876 + MER88 LTR ERVL 74 464 0 340 270 29 72 chr1 253855072 253855300 -28338364 - MLT1J LTR MaLR -181 390 194 1995 229 109 41 chr1 253855353 253855712 -28337952 - HAL1 LINE L1 -567 1940 1607 2452 97 0 0 chr1 253855712 253856022 -28337642 + AluSx SINE Alu 1 310 -2 1995 229 109 41 chr1 253856022 253856412 -28337252 - HAL1 LINE L1 -900 1607 1140 1046 275 44 38 chr1 253856399 253857010 -28336654 - L1MEc LINE L1 -3956 2440 1826 * 1810 136 29 11 chr1 253857013 253857329 -28336335 - AluSx SINE Alu 0 321 1 210 326 11 56 chr1 253858674 253858763 -28334901 - L2 LINE L2 -81 3191 3107 272 261 96 64 chr1 253859605 253859657 -28334007 - MIR SINE MIR -14 248 199 952 206 23 6 chr1 253859657 253859832 -28333832 + MER45A DNA AcHobo 1 178 0 272 261 96 64 chr1 253859832 253859936 -28333728 - MIR SINE MIR -63 199 87 307 318 152 13 chr1 253860028 253860179 -28333485 + MER5A DNA MER1_type 15 186 -3 370 262 43 30 chr1 253860190 253860293 -28333371 + MER112 DNA MER1_type 1 108 -152 2249 109 0 0 chr1 253860293 253860587 -28333077 + AluSx SINE Alu 1 294 -18 370 262 43 30 chr1 253860587 253860647 -28333017 + MER112 DNA MER1_type 108 166 -94 929 105 16 0 chr1 253861114 253861238 -28332426 - AluSq/x SINE Alu -187 126 1 259 277 84 34 chr1 253862017 253862136 -28331528 + MER5C DNA MER1_type 1 125 -199 660 204 87 5 chr1 253862220 253862416 -28331248 + MER5C DNA MER1_type 110 321 -3 272 164 82 55 chr1 253862704 253862777 -28330887 - MIR SINE MIR -93 169 95 350 386 43 5 chr1 253863443 253863627 -28330037 + L2 LINE L2 2865 3055 -217 201 247 164 0 chr1 253863899 253863972 -28329692 + MIR SINE MIR 163 247 -15 9008 123 26 1 chr1 253864192 253865509 -28328155 + Tigger1 DNA MER2_type 1 1349 -1069 1769 155 0 14 chr1 253915616 253915938 -28277726 - AluJo SINE Alu 0 331 14 242 173 0 77 chr1 253916027 253916079 -28277585 + L2 LINE L2 3003 3050 -222 408 241 66 58 chr1 253916263 253916400 -28277264 + L2 LINE L2 3176 3313 0 33 56 0 0 chr1 253917649 253917703 -28275961 + AT_rich Low_complexity Low_complexity 1 54 0 189 263 140 0 chr1 253917759 253917816 -28275848 - MIR SINE MIR -74 188 124 21 36 0 0 chr1 253920413 253920441 -28273223 + AT_rich Low_complexity Low_complexity 1 28 0 2360 92 0 0 chr1 253920829 253921133 -28272531 + AluY SINE Alu 1 304 -7 447 215 156 21 chr1 253922825 253923011 -28270653 - L1ME LINE L1 -302 5819 5609 24 0 0 0 chr1 253923277 253923301 -28270363 + AT_rich Low_complexity Low_complexity 1 24 0 1709 164 44 3 chr1 253924251 253924544 -28269120 + AluJb SINE Alu 1 305 -7 2215 101 0 0 chr1 253925664 253925950 -28267714 + AluSx SINE Alu 13 298 -14 2099 111 10 3 chr1 253925952 253926249 -28267415 + AluSx SINE Alu 1 299 -13 204 425 12 0 chr1 253926784 253926864 -28266800 - L2 LINE L2 -86 3186 3106 446 306 38 25 chr1 253926949 253927109 -28266555 - L2 LINE L2 0 3313 3152 205 315 34 34 chr1 253927234 253927323 -28266341 + L2 LINE L2 1369 1457 -1857 1948 140 14 0 chr1 253928175 253928468 -28265196 + AluSx SINE Alu 1 297 -15 441 312 168 35 chr1 253929822 253930386 -28263278 + L2 LINE L2 1615 2253 -1061 850 141 39 0 chr1 253930438 253930566 -28263098 + FLAM_C SINE Alu 1 133 0 838 173 54 5 chr1 253931012 253931197 -28262467 - L1MB1 LINE L1 -8 6160 5967 4415 149 28 19 chr1 253931197 253932031 -28261633 - L1MB1 LINE L1 -120 6048 5205 2255 174 36 5 chr1 253934489 253934902 -28258762 - MSTB LTR MaLR 0 426 1 254 324 114 9 chr1 253935079 253935184 -28258480 - L2 LINE L2 -7 3265 3150 352 262 128 13 chr1 253935431 253935580 -28258084 - L2 LINE L2 -924 2390 2225 430 212 0 0 chr1 253935608 253935693 -28257971 - MIR SINE MIR -32 230 146 610 280 50 67 chr1 253935973 253936212 -28257452 + MIR SINE MIR 13 247 -15 201 213 0 0 chr1 253936505 253936552 -28257112 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 502 258 65 32 chr1 253936599 253936754 -28256910 + MIR SINE MIR 103 262 0 22 35 0 0 chr1 253937910 253937939 -28255725 + AT_rich Low_complexity Low_complexity 1 29 0 476 306 100 33 chr1 253938078 253938379 -28255285 + HAL1 LINE L1 1134 1454 -1053 1141 79 0 0 chr1 253938411 253938551 -28255113 + AluY SINE Alu 157 296 -15 297 337 22 17 chr1 253938551 253938732 -28254932 + HAL1 LINE L1 1478 1659 -848 2102 123 3 0 chr1 253939034 253939318 -28254346 + AluSq SINE Alu 4 288 -25 186 43 0 0 chr1 253939321 253939344 -28254320 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr1 253939746 253939768 -28253896 + AT_rich Low_complexity Low_complexity 1 22 0 430 281 98 75 chr1 253940488 253940595 -28253069 - L1MC4a LINE L1 -1741 6067 5964 1555 170 6 64 chr1 253940595 253940925 -28252739 + AluJo SINE Alu 1 311 -1 430 281 98 75 chr1 253940925 253941152 -28252512 - L1MC4a LINE L1 -1844 5964 5725 21 36 0 0 chr1 253941400 253941428 -28252236 + AT_rich Low_complexity Low_complexity 1 28 0 323 287 17 43 chr1 253941466 253941581 -28252083 - L1MC4a LINE L1 -2282 5526 5415 423 218 0 0 chr1 253941594 253941672 -28251992 + MER58B DNA MER1_type 264 341 0 1810 197 65 3 chr1 253942207 253942578 -28251086 - MSTD LTR MaLR -2 394 1 1728 178 44 36 chr1 253942838 253943198 -28250466 + MLT1A1 LTR MaLR 3 365 0 19917 148 24 17 chr1 253943259 253949696 -28243968 + L1PA10 LINE L1 11 6480 -3 341 265 99 38 chr1 253950560 253950734 -28242930 + L1ME4a LINE L1 5710 5898 -223 1765 189 0 17 chr1 253950861 253951162 -28242502 - AluJb SINE Alu -16 296 1 24 0 0 0 chr1 253952208 253952232 -28241432 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr1 253952788 253952842 -28240822 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr1 253955045 253955073 -28238591 + AT_rich Low_complexity Low_complexity 1 28 0 352 321 40 76 chr1 253955644 253955921 -28237743 - L2 LINE L2 -11 3261 2995 233 289 39 19 chr1 253956588 253956692 -28236972 - L2 LINE L2 -6 3307 3202 2684 260 80 23 chr1 253956743 253957662 -28236002 + L2 LINE L2 2036 3004 -309 842 207 35 6 chr1 253959970 253960144 -28233520 - MER5A DNA MER1_type 0 189 11 194 167 259 0 chr1 253960872 253960926 -28232738 - MIR SINE MIR -71 191 124 900 210 105 18 chr1 253961000 253961229 -28232435 + MIR SINE MIR 14 262 0 281 356 34 68 chr1 253961334 253961426 -28232238 + MIR3 SINE MIR 11 96 -112 2158 106 11 0 chr1 253961426 253961708 -28231956 - AluSg SINE Alu -14 296 12 281 356 34 68 chr1 253961708 253961792 -28231872 + MIR3 SINE MIR 96 181 -27 1386 285 98 8 chr1 253962397 253962948 -28230716 - L2 LINE L2 0 3313 2711 22 56 0 0 chr1 253964271 253964307 -28229357 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 253966067 253966088 -28227576 + AT_rich Low_complexity Low_complexity 1 21 0 2789 7 0 0 chr1 253966874 253967178 -28226486 + AluYa5 SINE Alu 1 304 -7 2016 135 4 0 chr1 253967463 253967744 -28225920 + AluJb SINE Alu 1 282 -30 316 270 45 0 chr1 253967859 253967948 -28225716 + L1MEc LINE L1 201 293 -6270 2577 238 136 46 chr1 253967976 253968527 -28225137 + L1MEc LINE L1 289 789 -5774 2450 82 7 0 chr1 253968527 253968832 -28224832 + AluSx SINE Alu 2 308 -4 1495 86 0 0 chr1 253968832 253969019 -28224645 + AluSp SINE Alu 126 312 -1 2577 238 136 46 chr1 253969019 253969307 -28224357 + L1MEc LINE L1 789 1050 -5513 2145 100 24 0 chr1 253969307 253969434 -28224230 + AluY SINE Alu 1 123 -188 198 0 0 0 chr1 253969434 253969456 -28224208 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2145 100 24 0 chr1 253969456 253969619 -28224045 + AluY SINE Alu 123 298 -13 2577 238 136 46 chr1 253969619 253970550 -28223114 + L1MEc LINE L1 1050 2306 -4257 5606 124 25 18 chr1 253970557 253971646 -28222018 + L1MA8 LINE L1 5142 6241 -50 1872 171 3 7 chr1 253971646 253971951 -28221713 + AluJb SINE Alu 1 304 -8 5606 124 25 18 chr1 253971951 253971999 -28221665 + L1MA8 LINE L1 6241 6287 -4 881 173 24 23 chr1 253972017 253972295 -28221369 + L1MEc LINE L1 2258 2564 -3884 2188 128 0 3 chr1 253972898 253973203 -28220461 - AluSc SINE Alu -5 304 1 185 204 45 0 chr1 253974964 253975008 -28218656 + L2 LINE L2 3209 3254 -18 264 227 73 18 chr1 253975551 253975661 -28218003 - L1ME4a LINE L1 -39 6082 5967 1378 232 41 49 chr1 253975701 253976232 -28217432 - LTR55 LTR ERV -21 527 1 2330 114 0 0 chr1 253976236 253976542 -28217122 - AluSx SINE Alu -4 308 3 221 0 0 33 chr1 253976763 253976793 -28216871 + (CA)n Simple_repeat Simple_repeat 2 30 0 203 136 45 0 chr1 253976793 253976837 -28216827 + (TA)n Simple_repeat Simple_repeat 1 46 0 198 0 0 0 chr1 253976838 253976860 -28216804 + (TG)n Simple_repeat Simple_repeat 2 23 0 22 56 0 0 chr1 253977640 253977676 -28215988 + AT_rich Low_complexity Low_complexity 1 36 0 2130 122 0 0 chr1 253978015 253978301 -28215363 - AluSx SINE Alu -20 292 7 2144 118 14 0 chr1 253978494 253978782 -28214882 + AluSx SINE Alu 1 292 -20 3759 139 32 15 chr1 253978804 253979517 -28214147 + L1MB3 LINE L1 5288 6012 -171 2044 128 30 10 chr1 253979863 253980346 -28213318 - AluSx SINE Alu 0 312 3 250 295 48 60 chr1 253980810 253980976 -28212688 - MIR3 SINE MIR -15 193 30 301 158 0 0 chr1 253981747 253981804 -28211860 - L1PA16 LINE L1 -9 6157 6101 271 333 69 16 chr1 253982510 253982699 -28210965 - L1MC4 LINE L1 -1040 7002 6804 2090 125 26 3 chr1 253983844 253984149 -28209515 - AluSx SINE Alu 0 312 1 2336 86 3 25 chr1 253985487 253985801 -28207863 + AluSp SINE Alu 1 307 -6 22 0 0 0 chr1 253985984 253986006 -28207658 + AT_rich Low_complexity Low_complexity 1 22 0 1755 144 29 93 chr1 253986909 253987033 -28206631 + MLT1B LTR MaLR 1 131 -259 1628 129 81 15 chr1 253987033 253987304 -28206360 + AluJo SINE Alu 3 291 -21 1755 144 29 93 chr1 253987304 253987596 -28206068 + MLT1B LTR MaLR 131 390 0 1428 150 138 42 chr1 253987885 253988218 -28205446 - MLT1A1 LTR MaLR 0 365 1 204 159 23 0 chr1 253988683 253988727 -28204937 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2234 78 4 4 chr1 253988780 253989081 -28204583 + AluSp SINE Alu 2 302 0 2734 110 31 9 chr1 253989369 253989788 -28203876 - MSTA LTR MaLR 0 428 1 2258 102 7 0 chr1 253990289 253990584 -28203080 - AluSx SINE Alu -15 297 1 440 214 136 0 chr1 253990596 253990699 -28202965 - FLAM_A SINE Alu -20 122 6 730 172 178 50 chr1 253990879 253991059 -28202605 - AluJo SINE Alu -23 289 87 1167 137 88 10 chr1 253991059 253991264 -28202400 - AluJo SINE Alu -91 221 1 329 328 57 69 chr1 253991531 253991778 -28201886 - L1ME LINE L1 -504 5617 5374 21 36 0 0 chr1 253992196 253992224 -28201440 + GC_rich Low_complexity Low_complexity 1 28 0 253 324 70 51 chr1 253993423 253993679 -28199985 - L2 LINE L2 -26 3246 2986 3580 173 9 27 chr1 253993707 253994440 -28199224 + L1MB5 LINE L1 5446 6165 -9 233 211 88 0 chr1 253995314 253995371 -28198293 - L2 LINE L2 -43 3270 3209 2203 105 3 7 chr1 253995417 253995723 -28197941 + AluSq SINE Alu 1 305 -8 639 199 186 6 chr1 253995905 253996061 -28197603 - MIR SINE MIR -32 230 47 355 301 35 18 chr1 253996114 253996227 -28197437 + MIR SINE MIR 6 120 -142 322 275 0 0 chr1 253996251 253996342 -28197322 - LTR65 LTR ERV1 -20 649 559 811 301 167 47 chr1 253996350 253997369 -28196295 - L2 LINE L2 -1001 2313 1191 251 226 9 96 chr1 253997380 253997495 -28196169 - L2 LINE L2 -2572 742 638 201 176 0 0 chr1 254000614 254000648 -28193016 + T-rich Low_complexity Low_complexity 1 34 0 2098 117 37 3 chr1 254001063 254001362 -28192302 + AluSx SINE Alu 1 309 -3 2292 94 3 0 chr1 254003002 254003299 -28190365 + AluSx SINE Alu 6 303 -9 401 344 0 26 chr1 254003316 254003505 -28190159 - MIR SINE MIR -38 224 41 1956 154 52 107 chr1 254003550 254004140 -28189524 - LTR64 LTR ERVK 0 558 1 187 289 222 0 chr1 254004594 254004684 -28188980 + MIR SINE MIR 78 187 -75 217 265 20 39 chr1 254004776 254004878 -28188786 + GA-rich Low_complexity Low_complexity 1 100 0 271 234 31 0 chr1 254005438 254005502 -28188162 - L2 LINE L2 0 3272 3207 878 200 55 10 chr1 254005580 254005779 -28187885 - LTR16A LTR ERVL -38 412 205 2516 152 26 104 chr1 254005779 254005839 -28187825 + MER41D LTR ERV1 1 64 -493 2153 108 0 29 chr1 254005839 254006154 -28187510 + AluSq SINE Alu 1 306 -7 2516 152 26 104 chr1 254006154 254006659 -28187005 + MER41D LTR ERV1 64 522 -35 525 293 56 10 chr1 254006669 254006867 -28186797 - LTR16A LTR ERVL -243 207 1 304 260 126 8 chr1 254006878 254007005 -28186659 + MIR SINE MIR 56 197 -65 257 274 134 85 chr1 254007061 254007368 -28186296 - L2 LINE L2 -144 3128 2807 234 289 58 10 chr1 254007813 254007917 -28185747 + MIR3 SINE MIR 85 193 -15 200 200 0 0 chr1 254008533 254008568 -28185096 + GA-rich Low_complexity Low_complexity 2 36 0 257 301 102 0 chr1 254008928 254009104 -28184560 - L2 LINE L2 -396 2918 2725 186 257 108 0 chr1 254009111 254009185 -28184479 - MIR SINE MIR -91 171 90 365 297 58 0 chr1 254009279 254009417 -28184247 + L2 LINE L2 3127 3272 0 1367 161 57 109 chr1 254009429 254009814 -28183850 - MLT1A1 LTR MaLR 0 365 1 1137 231 131 0 chr1 254009826 254010086 -28183578 + MER21B LTR ERV1 12 305 -558 1768 79 20 12 chr1 254010097 254010350 -28183314 + L1PA8 LINE L1 5917 6171 -1 742 129 47 47 chr1 254010350 254010505 -28183159 + L1MA3 LINE L1 6135 6305 0 528 69 0 28 chr1 254010512 254010584 -28183080 - L1P4 LINE L1 -696 5472 5403 402 137 84 21 chr1 254010584 254010671 -28182993 + L1PA16 LINE L1 6066 6166 0 2221 226 58 33 chr1 254010678 254011230 -28182434 + MER21B LTR ERV1 289 854 -9 1085 137 31 0 chr1 254011490 254011651 -28182013 - AluJb SINE Alu -18 294 129 1742 161 7 14 chr1 254012296 254012576 -28181088 + AluJo SINE Alu 5 282 -30 212 290 60 20 chr1 254012617 254012717 -28180947 - L2 LINE L2 -785 2529 2426 327 259 107 0 chr1 254013118 254013249 -28180415 - MIR SINE MIR -37 225 81 2375 64 0 24 chr1 254013567 254013865 -28179799 - AluSq SINE Alu -22 291 1 232 312 0 32 chr1 254014538 254014631 -28179033 + L1 LINE L1 4888 4977 -1169 2211 107 0 7 chr1 254014899 254015199 -28178465 - AluSx SINE Alu -14 298 1 2794 175 21 4 chr1 254015559 254016084 -28177580 - L1MB8 LINE L1 -6 6172 5639 4186 185 46 63 chr1 254016095 254017028 -28176636 - MER21A LTR ERV1 -14 917 1 1822 186 33 7 chr1 254017031 254017516 -28176148 - L1MB8 LINE L1 -544 5640 5149 581 152 8 114 chr1 254017517 254017649 -28176015 - MER4A LTR ERV1 0 664 547 7250 85 62 13 chr1 254017649 254018942 -28174722 + MER4A-int LTR ERV1 5182 6593 -5 568 116 53 21 chr1 254018953 254019048 -28174616 + MER4A LTR ERV1 1 98 -566 1017 151 4 33 chr1 254019048 254019280 -28174384 + MER4A LTR ERV1 261 544 -120 2302 113 23 3 chr1 254019280 254019626 -28174038 - PABL_A-int LTR ERV1 -1331 3684 3332 2371 177 20 34 chr1 254019627 254020124 -28173540 + LTR2B LTR ERV1 1 490 0 2874 91 10 8 chr1 254020124 254020522 -28173142 + Harlequin LTR ERV1 1 399 -6497 * 8337 54 18 22 chr1 254020502 254021579 -28172085 + Harlequin LTR ERV1 263 1334 -5562 5918 47 71 72 chr1 254021572 254022575 -28171089 + Harlequin LTR ERV1 1573 2574 -4322 * 15214 76 5 2 chr1 254022574 254024489 -28169175 + Harlequin LTR ERV1 3352 5273 -1623 1751 71 119 0 chr1 254024482 254024734 -28168930 - MER4A-int LTR ERV1 -6316 282 1 * 1739 126 3 77 chr1 254024737 254024795 -28168869 - MER4A LTR ERV1 0 664 603 2264 80 20 3 chr1 254024795 254025096 -28168568 + AluY SINE Alu 4 309 -2 1739 126 3 77 chr1 254025096 254025410 -28168254 - MER4A LTR ERV1 -61 603 261 526 126 53 21 chr1 254025410 254025505 -28168159 - MER4A LTR ERV1 -566 98 1 750 171 92 127 chr1 254025505 254025764 -28167900 - L1MB8 LINE L1 -995 5151 4903 2118 140 7 0 chr1 254025764 254026072 -28167592 + AluSx SINE Alu 1 310 -2 750 171 92 127 chr1 254026072 254026127 -28167537 - L1MB8 LINE L1 -1243 4903 4848 692 153 0 0 chr1 254026129 254026240 -28167424 + FLAM_C SINE Alu 2 112 -31 3410 224 39 12 chr1 254026249 254027143 -28166521 - L1MB8 LINE L1 -1295 4851 3934 604 197 189 8 chr1 254027144 254027276 -28166388 - AluJo SINE Alu -68 244 89 1816 243 47 12 chr1 254027276 254027872 -28165792 - L1MB8 LINE L1 -2707 3439 2823 1623 199 32 0 chr1 254027872 254028184 -28165480 - MLT1D LTR MaLR -180 325 4 993 224 43 37 chr1 254028928 254029227 -28164437 - L1ME3A LINE L1 -190 5980 5680 227 303 15 0 chr1 254029403 254029469 -28164195 + L2 LINE L2 3154 3220 -52 2579 65 0 3 chr1 254029797 254030106 -28163558 + AluY SINE Alu 1 308 -3 202 143 0 24 chr1 254030661 254030703 -28162961 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2224 122 3 0 chr1 254030956 254031259 -28162405 - AluSx SINE Alu -8 304 1 210 108 0 54 chr1 254031342 254031379 -28162285 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 727 197 33 0 chr1 254032324 254032476 -28161188 + L1MB7 LINE L1 5514 5670 -504 1193 155 6 0 chr1 254032481 254032662 -28161002 + AluJb SINE Alu 126 307 -5 2273 175 44 19 chr1 254032663 254033085 -28160579 + L1MB7 LINE L1 5680 6117 -67 2257 116 36 30 chr1 254033085 254033447 -28160217 + THE1B LTR MaLR 1 364 0 2273 175 44 19 chr1 254033447 254033498 -28160166 + L1MB7 LINE L1 6117 6165 -19 188 196 0 18 chr1 254033603 254033659 -28160005 + (TGAA)n Simple_repeat Simple_repeat 2 56 0 254 356 10 0 chr1 254035002 254035103 -28158561 - Charlie8 DNA MER1_type -2187 230 129 24 32 0 0 chr1 254036105 254036136 -28157528 + AT_rich Low_complexity Low_complexity 1 31 0 277 153 60 13 chr1 254036839 254036989 -28156675 + (TA)n Simple_repeat Simple_repeat 2 158 0 256 188 39 0 chr1 254037007 254037135 -28156529 + (TA)n Simple_repeat Simple_repeat 2 134 0 562 131 24 0 chr1 254037322 254037406 -28156258 - FRAM SINE Alu -20 156 71 6920 124 21 18 chr1 254037419 254037513 -28156151 - L1MA2 LINE L1 0 7723 7631 2427 80 3 0 chr1 254037513 254037813 -28155851 + AluSc SINE Alu 1 301 -8 2002 107 7 0 chr1 254037813 254038159 -28155505 + AluSx SINE Alu 1 349 0 6920 124 21 18 chr1 254038159 254040096 -28153568 - L1MA2 LINE L1 -91 7632 5687 * 21642 133 33 65 chr1 254040083 254040213 -28153451 - L1MA2 LINE L1 -2760 4805 4672 721 100 0 0 chr1 254040213 254040313 -28153351 - L1MA2 LINE L1 0 6304 6205 21642 133 33 65 chr1 254040313 254040563 -28153101 - L1MA2 LINE L1 -2893 4672 4416 2473 67 0 0 chr1 254040563 254040863 -28152801 - AluY SINE Alu -11 300 1 21642 133 33 65 chr1 254040863 254045431 -28148233 - L1MA2 LINE L1 -3149 4416 14 1173 188 0 73 chr1 254045639 254045873 -28147791 - AluJo SINE Alu -95 217 1 338 250 0 0 chr1 254045899 254045971 -28147693 + MLT1J2 LTR MaLR 345 416 -34 2304 155 54 2 chr1 254046474 254046881 -28146783 + MSTA LTR MaLR 1 428 0 209 286 0 0 chr1 254047088 254047144 -28146520 - MIR3 SINE MIR -53 155 100 * 395 333 90 62 chr1 254047141 254047257 -28146407 + L2 LINE L2 2284 2395 -877 2626 62 0 0 chr1 254047257 254047564 -28146100 - AluY SINE Alu -4 307 1 395 333 90 62 chr1 254047564 254048237 -28145427 + L2 LINE L2 2395 3111 -161 3111 165 43 22 chr1 254048987 254049634 -28144030 - MER67B LTR ERV1 0 661 1 317 229 67 19 chr1 254050608 254050713 -28142951 + MIR3 SINE MIR 94 203 -5 2237 119 0 0 chr1 254051032 254051342 -28142322 - AluSx SINE Alu -2 310 1 291 260 49 73 chr1 254051634 254051757 -28141907 + MER5A DNA MER1_type 47 166 -23 566 330 41 9 chr1 254052251 254052472 -28141192 - MIR SINE MIR -15 247 20 284 254 42 14 chr1 254052548 254052619 -28141045 + MIR3 SINE MIR 123 195 -13 1645 145 3 28 chr1 254054171 254054460 -28139204 + AluJo SINE Alu 1 282 -30 27 49 0 0 chr1 254054471 254054512 -28139152 + AT_rich Low_complexity Low_complexity 1 41 0 2299 74 0 52 chr1 254054544 254054870 -28138794 + AluY SINE Alu 1 309 -2 1873 156 7 0 chr1 254055383 254055684 -28137980 + AluSx SINE Alu 1 303 -9 2406 231 26 11 chr1 254056930 254057468 -28136196 - MER74A LTR ERVL -12 546 1 239 248 291 0 chr1 254058034 254058151 -28135513 - MIR SINE MIR -63 199 49 2130 114 3 0 chr1 254058516 254058822 -28134842 - AluSq SINE Alu -6 307 1 1438 192 96 51 chr1 254059087 254059441 -28134223 - MLT1A2 LTR MaLR -4 370 1 2194 101 0 3 chr1 254059596 254059903 -28133761 - AluSc SINE Alu -3 306 1 2087 115 3 0 chr1 254060044 254060339 -28133325 - AluSq SINE Alu -17 296 1 207 299 115 11 chr1 254060431 254060452 -28133212 + MIR SINE MIR 165 182 -80 285 51 0 0 chr1 254060452 254060491 -28133173 + (TG)n Simple_repeat Simple_repeat 2 40 0 207 299 115 11 chr1 254060491 254060556 -28133108 + MIR SINE MIR 182 260 -2 464 255 67 27 chr1 254060566 254060715 -28132949 - L1 LINE L1 -1593 4553 4399 349 236 91 0 chr1 254061759 254061869 -28131795 + Charlie2 DNA MER1_type 211 330 -2532 * 1516 209 130 8 chr1 254061860 254062367 -28131297 + Charlie2 DNA MER1_type 1856 2424 -438 936 226 139 15 chr1 254062400 254062732 -28130932 + Charlie2 DNA MER1_type 2490 2862 0 420 280 46 29 chr1 254062768 254062931 -28130733 - MIR SINE MIR -65 143 6 417 204 57 0 chr1 254062960 254063048 -28130616 + MER5A DNA MER1_type 20 112 -77 238 395 26 11 chr1 254063526 254063716 -28129948 - L2 LINE L2 -673 2641 2449 532 195 97 9 chr1 254064060 254064173 -28129491 + L2 LINE L2 3188 3310 -3 550 311 86 18 chr1 254065357 254065579 -28128085 - MIR SINE MIR 0 262 26 2031 125 3 0 chr1 254065717 254066013 -28127651 - AluSx SINE Alu -15 297 1 1543 159 58 27 chr1 254066123 254066418 -28127246 + AluJo SINE Alu 2 305 -7 218 224 0 41 chr1 254067053 254067102 -28126562 - L2 LINE L2 -3 3269 3223 1759 162 0 29 chr1 254067193 254067502 -28126162 - AluJo SINE Alu -12 300 1 250 258 100 42 chr1 254067518 254067638 -28126026 + MER5A DNA MER1_type 63 189 0 695 176 22 110 chr1 254067786 254067968 -28125696 - MER69A DNA AcHobo -9 168 3 24 77 0 0 chr1 254068444 254068496 -28125168 + AT_rich Low_complexity Low_complexity 1 52 0 680 130 9 9 chr1 254068507 254068615 -28125049 + AluJb SINE Alu 29 136 -176 183 373 0 0 chr1 254069412 254069471 -28124193 + MIR SINE MIR 29 87 -175 290 282 0 12 chr1 254069689 254069774 -28123890 - MIR SINE MIR 0 262 179 786 282 28 28 chr1 254069774 254070022 -28123642 - MER112 DNA MER1_type -12 248 1 492 286 14 14 chr1 254070022 254070162 -28123502 - MIR SINE MIR -98 164 25 345 221 234 7 chr1 254071013 254071158 -28122506 - MER5B DNA MER1_type 0 178 1 186 43 0 0 chr1 254071361 254071384 -28122280 + (TC)n Simple_repeat Simple_repeat 2 24 0 1839 72 0 61 chr1 254071479 254071757 -28121907 + AluY SINE Alu 51 311 0 2166 106 7 0 chr1 254072639 254072940 -28120724 + AluSx SINE Alu 3 305 -7 654 260 145 57 chr1 254073243 254073345 -28120319 - L1ME4a LINE L1 -1 6120 6028 1547 88 0 0 chr1 254073345 254073550 -28120114 + L1PA8 LINE L1 5964 6168 -4 654 260 145 57 chr1 254073550 254074058 -28119606 - L1ME4a LINE L1 -93 6028 5421 231 336 95 0 chr1 254074100 254074216 -28119448 - L2 LINE L2 0 3272 3146 291 28 0 0 chr1 254074304 254074340 -28119324 + (TG)n Simple_repeat Simple_repeat 2 37 0 506 122 20 82 chr1 254074526 254074624 -28119040 + MER21B LTR ERV1 5 96 -767 2735 212 54 33 chr1 254074663 254075352 -28118312 + MER21B LTR ERV1 98 800 -63 356 314 46 67 chr1 254075414 254075585 -28118079 - L1ME4a LINE L1 -53 6068 5902 225 0 0 0 chr1 254075585 254075610 -28118054 + (CA)n Simple_repeat Simple_repeat 2 26 0 356 314 46 67 chr1 254075610 254075677 -28117987 - L1ME4a LINE L1 -219 5902 5835 1237 161 0 5 chr1 254075692 254075903 -28117761 - AluJb SINE Alu -18 294 85 231 36 0 0 chr1 254076565 254076593 -28117071 + (TG)n Simple_repeat Simple_repeat 2 29 0 5564 122 10 1 chr1 254077141 254077954 -28115710 - L1PA15 LINE L1 0 6165 5346 39 22 0 0 chr1 254078030 254078076 -28115588 + AT_rich Low_complexity Low_complexity 1 46 0 360 209 0 0 chr1 254079583 254079650 -28114014 - Tigger5 DNA MER2_type 0 2323 2257 2481 132 35 26 chr1 254079664 254079736 -28113928 - MSTA LTR MaLR 0 428 358 2066 117 3 22 chr1 254079736 254080053 -28113611 + AluSx SINE Alu 1 311 -1 2481 132 35 26 chr1 254080053 254080404 -28113260 - MSTA LTR MaLR -70 358 1 2688 134 111 14 chr1 254080427 254080921 -28112743 + MER34 LTR ERV1 1 542 0 189 107 0 0 chr1 254080944 254080972 -28112692 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 204 238 38 12 chr1 254080982 254081062 -28112602 + (TA)n Simple_repeat Simple_repeat 2 83 0 379 298 111 6 chr1 254081075 254081246 -28112418 + MIR SINE MIR 14 202 -60 1839 121 38 3 chr1 254082230 254082520 -28111144 - AluSx SINE Alu -12 300 1 318 235 160 76 chr1 254084499 254084737 -28108927 + MIR SINE MIR 1 258 -4 349 217 114 54 chr1 254084896 254085062 -28108602 + MER104 DNA Tc2 2 177 -3 1691 174 72 57 chr1 254087392 254087851 -28105813 + MER31B LTR ERV1 1 466 0 2053 64 30 0 chr1 254089487 254089606 -28104058 + AluSx SINE Alu 4 118 -194 210 37 0 0 chr1 254089606 254089633 -28104031 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2053 64 30 0 chr1 254089633 254089780 -28103884 + AluSx SINE Alu 118 278 -34 204 40 0 0 chr1 254089784 254089809 -28103855 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 2194 62 0 33 chr1 254090283 254090588 -28103076 + AluY SINE Alu 1 295 -16 271 331 30 30 chr1 254090928 254091061 -28102603 - L2 LINE L2 -208 3064 2932 1456 63 112 0 chr1 254091114 254091320 -28102344 + MER30 DNA MER1_type 1 229 -1 2701 136 20 5 chr1 254091390 254091830 -28101834 + L1MB4 LINE L1 5694 6140 -40 663 189 92 7 chr1 254091844 254091997 -28101667 - L1M3 LINE L1 -414 5766 5601 23 0 0 0 chr1 254092014 254092037 -28101627 + AT_rich Low_complexity Low_complexity 1 23 0 219 319 59 17 chr1 254092086 254092205 -28101459 - L2 LINE L2 -497 2817 2694 344 165 44 22 chr1 254094103 254094194 -28099470 - L1ME4a LINE L1 -4 6117 6025 767 281 25 9 chr1 254094293 254094617 -28099047 - L1ME4a LINE L1 -244 5877 5549 365 244 120 86 chr1 254094643 254094852 -28098812 - L1ME4a LINE L1 -885 5474 5259 357 218 90 0 chr1 254096113 254096191 -28097473 + MARNA DNA Mariner 454 538 -48 301 242 20 50 chr1 254096327 254096426 -28097238 + L1ME3A LINE L1 6075 6170 0 22 35 0 0 chr1 254096511 254096540 -28097124 + AT_rich Low_complexity Low_complexity 1 29 0 420 311 115 6 chr1 254096697 254096880 -28096784 - MIR SINE MIR -16 246 44 549 208 6 44 chr1 254096900 254097059 -28096605 + MER113 DNA MER1_type? 6 158 -363 691 225 114 8 chr1 254097172 254097468 -28096196 + MER113 DNA MER1_type? 141 521 0 200 194 30 15 chr1 254097605 254097672 -28095992 + (TTA)n Simple_repeat Simple_repeat 3 70 0 199 308 0 65 chr1 254097855 254097962 -28095702 - MIR SINE MIR -56 206 107 713 192 20 7 chr1 254098806 254098957 -28094707 + FRAM SINE Alu 22 174 -2 277 301 154 0 chr1 254099047 254099183 -28094481 - MIR3 SINE MIR -42 166 10 292 340 52 0 chr1 254101056 254101209 -28092455 - MIR SINE MIR -52 210 50 882 268 190 47 chr1 254102031 254103026 -28090638 + L2 LINE L2 2128 3270 -2 2276 117 0 0 chr1 254103843 254104142 -28089522 - AluSx SINE Alu -13 299 1 2777 91 3 3 chr1 254104554 254104918 -28088746 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr1 254106006 254106027 -28087637 + AT_rich Low_complexity Low_complexity 1 21 0 363 264 82 60 chr1 254107122 254107475 -28086189 + L1MC5 LINE L1 7552 7912 -49 1966 152 0 0 chr1 254108940 254109223 -28084441 + AluSx SINE Alu 1 283 -29 246 32 0 0 chr1 254109226 254109257 -28084407 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 205 248 121 47 chr1 254109514 254109663 -28084001 + MIR3 SINE MIR 4 163 -45 305 287 11 11 chr1 254110773 254110867 -28082797 + MIR SINE MIR 61 154 -108 264 77 0 0 chr1 254111132 254111171 -28082493 + (TTTAA)n Simple_repeat Simple_repeat 2 40 0 1906 139 0 0 chr1 254111171 254111438 -28082226 - AluSx SINE Alu -20 292 26 327 299 85 23 chr1 254112471 254112648 -28081016 + MIR SINE MIR 20 207 -55 207 100 0 0 chr1 254112972 254113002 -28080662 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 385 252 8 47 chr1 254113003 254113130 -28080534 - L2 LINE L2 -9 3304 3183 182 365 33 50 chr1 254113578 254113759 -28079905 - L2 LINE L2 -89 3183 3006 205 372 98 20 chr1 254113919 254114325 -28079339 - L2 LINE L2 -493 2821 2384 2225 101 7 14 chr1 254114382 254114679 -28078985 - AluY SINE Alu -16 295 1 219 244 70 0 chr1 254114771 254114857 -28078807 - MER91C DNA MER1_type -17 123 32 1654 189 0 40 chr1 254116099 254116422 -28077242 + AluJo SINE Alu 1 310 -2 1073 104 0 0 chr1 254118743 254118887 -28074777 - AluSc SINE Alu -2 307 164 2713 98 127 0 chr1 254118888 254119317 -28074347 - LTR12 LTR ERV1 -234 1601 52 259 231 0 0 chr1 254119317 254119369 -28074295 - LTR30 LTR ERV1 -670 52 1 244 282 70 0 chr1 254119369 254119405 -28074259 - AluJ SINE Alu -128 174 134 811 145 15 0 chr1 254119405 254119536 -28074128 - AluJ SINE Alu -169 133 1 185 0 40 0 chr1 254121735 254121760 -28071904 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2805 120 6 70 chr1 254122044 254122506 -28071158 + L1MB2 LINE L1 5688 6115 -56 1562 184 0 0 chr1 254122506 254122762 -28070902 + AluJo SINE Alu 42 297 -15 2805 120 6 70 chr1 254122762 254122815 -28070849 + L1MB2 LINE L1 6115 6170 -1 194 0 0 37 chr1 254123931 254123958 -28069706 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 227 372 0 0 chr1 254124382 254124468 -28069196 - MER5A DNA MER1_type -57 132 47 547 140 9 9 chr1 254125061 254125168 -28068496 + CT-rich Low_complexity Low_complexity 2 108 0 207 69 0 0 chr1 254125814 254125843 -28067821 + (TG)n Simple_repeat Simple_repeat 2 30 0 181 300 0 43 chr1 254125863 254125933 -28067731 - MIR3 SINE MIR -2 206 140 32 47 0 16 chr1 254126645 254126689 -28066975 + AT_rich Low_complexity Low_complexity 1 45 -18 1528 174 46 11 chr1 254126689 254126971 -28066693 - AluJb SINE Alu -20 292 1 32 47 0 16 chr1 254126971 254126990 -28066674 + AT_rich Low_complexity Low_complexity 45 63 0 1290 203 44 10 chr1 254127110 254127406 -28066258 + MER33 DNA MER1_type 1 293 -31 655 191 57 21 chr1 254127523 254127676 -28065988 + L1MB5 LINE L1 5998 6169 -2 575 259 57 44 chr1 254128196 254128424 -28065240 + L1ME3A LINE L1 5940 6170 0 1672 139 73 21 chr1 254128746 254129034 -28064630 - AluJo SINE Alu -9 303 1 313 283 114 27 chr1 254130060 254130244 -28063420 + MIR SINE MIR 60 259 -3 280 281 152 23 chr1 254130851 254131022 -28062642 - L2 LINE L2 -15 3298 3106 2188 160 45 29 chr1 254131146 254131685 -28061979 - MLT2A2 LTR ERVL 0 554 1 443 207 36 27 chr1 254132258 254132369 -28061295 + MIR3 SINE MIR 52 163 -45 516 213 56 93 chr1 254132721 254132822 -28060842 - MER102a DNA MER1_type -1101 316 213 2796 167 60 0 chr1 254132822 254133308 -28060356 - MLT2B2 LTR ERVL 0 515 1 516 213 56 93 chr1 254133308 254133422 -28060242 - MER102a DNA MER1_type -1204 213 109 2226 102 3 10 chr1 254134212 254134506 -28059158 + AluSq SINE Alu 3 294 -19 391 308 82 6 chr1 254134632 254134791 -28058873 + MIR3 SINE MIR 30 200 -8 1885 208 77 48 chr1 254135833 254136338 -28057326 + MLT2B1 LTR ERVL 1 520 0 373 196 69 0 chr1 254136547 254136649 -28057015 - L1MEc LINE L1 -4259 2137 2029 845 221 99 20 chr1 254137196 254137490 -28056174 + L1ME2 LINE L1 1813 2129 -4267 305 123 14 9 chr1 254137493 254137556 -28056108 + Alu SINE Alu 4 48 -254 727 198 6 0 chr1 254137567 254137734 -28055930 + L1ME2 LINE L1 3129 3296 -2919 * 1343 173 50 35 chr1 254137729 254138071 -28055593 + L1ME2 LINE L1 5725 6071 -162 251 128 0 0 chr1 254138071 254138110 -28055554 + MER3 DNA MER1_type 11 49 -160 338 200 38 0 chr1 254138120 254138200 -28055464 + L1ME2 LINE L1 6135 6217 -16 2419 242 124 16 chr1 254138267 254139024 -28054640 + L1MC4a LINE L1 6448 7286 -522 2013 209 40 44 chr1 254139017 254139563 -28054101 + L1MC4 LINE L1 7494 8037 -5 * 287 225 88 0 chr1 254140169 254140249 -28053415 - L2 LINE L2 -1 3271 3185 185 307 0 40 chr1 254141363 254141438 -28052226 - MIR SINE MIR -75 187 116 439 284 114 0 chr1 254142174 254142375 -28051289 - MIR SINE MIR -1 261 38 25 75 0 0 chr1 254142446 254142499 -28051165 + AT_rich Low_complexity Low_complexity 1 53 0 207 311 33 33 chr1 254142514 254142604 -28051060 - MIR SINE MIR -139 123 34 2636 215 72 8 chr1 254142863 254143187 -28050477 - MLT1E1 LTR MaLR 0 654 352 1854 190 34 14 chr1 254143187 254143545 -28050119 + MLT1A1 LTR MaLR 1 365 0 2636 215 72 8 chr1 254143545 254143833 -28049831 - MLT1E1 LTR MaLR -302 352 3 232 222 22 0 chr1 254143833 254143875 -28049789 - MLT1E3 LTR MaLR -579 45 3 180 111 0 0 chr1 254145155 254145182 -28048482 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 227 106 0 0 chr1 254146006 254146053 -28047611 + LTR66 LTR ERVL 395 441 -169 2129 113 17 0 chr1 254146939 254147232 -28046432 + AluSq SINE Alu 1 298 -15 614 288 109 47 chr1 254147370 254147863 -28045801 + L1M4 LINE L1 2609 3132 -3014 2111 142 0 0 chr1 254147978 254148274 -28045390 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr1 254148454 254148478 -28045186 + AT_rich Low_complexity Low_complexity 1 24 0 13811 180 28 28 chr1 254148749 254151542 -28042122 - L1MA4 LINE L1 0 6482 3689 1689 168 0 46 chr1 254151542 254151846 -28041818 - AluJo SINE Alu -22 290 1 13811 180 28 28 chr1 254151846 254153823 -28039841 - L1MA4 LINE L1 -2793 3689 1725 2243 100 0 7 chr1 254153823 254154122 -28039542 - AluSc SINE Alu -12 297 1 13811 180 28 28 chr1 254154122 254155133 -28038531 - L1MA4 LINE L1 -4757 1725 715 399 325 0 0 chr1 254155133 254155216 -28038448 + polypyrimidine Low_complexity Low_complexity 1 83 0 222 238 0 0 chr1 254155227 254155290 -28038374 + C-rich Low_complexity Low_complexity 1 63 0 85 62 0 0 chr1 254155290 254155387 -28038277 + GC_rich Low_complexity Low_complexity 1 97 0 200 217 98 21 chr1 254155387 254155530 -28038134 + (CCCGG)n Simple_repeat Simple_repeat 1 154 0 43 78 0 0 chr1 254155530 254155581 -28038083 + GC_rich Low_complexity Low_complexity 1 51 0 235 127 0 51 chr1 254155581 254155660 -28038004 + (CCCCCG)n Simple_repeat Simple_repeat 1 75 0 246 245 36 36 chr1 254155661 254155800 -28037864 + (CCGCG)n Simple_repeat Simple_repeat 3 141 0 * 262 178 44 52 chr1 254155732 254155867 -28037797 + (CGCGG)n Simple_repeat Simple_repeat 2 135 0 360 111 0 0 chr1 254155979 254156033 -28037631 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 3929 173 8 14 chr1 254156045 254156757 -28036907 - L1MA4 LINE L1 -4617 711 4 338 310 62 113 chr1 254156971 254157361 -28036303 - L2 LINE L2 -6 3266 2897 680 156 39 39 chr1 254157375 254157554 -28036110 - L1M4 LINE L1 -737 5939 5761 5205 100 36 5 chr1 254157563 254157798 -28035866 - L1MA2 LINE L1 0 6304 6078 2429 74 3 16 chr1 254157798 254158108 -28035556 - AluSp SINE Alu -7 306 1 5205 100 36 5 chr1 254158108 254158675 -28034989 - L1MA2 LINE L1 -226 6078 5477 9428 173 52 6 chr1 254159051 254161209 -28032455 - L1MA2 LINE L1 -743 5403 3244 345 225 28 0 chr1 254161220 254161291 -28032373 - L1M4 LINE L1 -886 5758 5686 6647 71 3 7 chr1 254161293 254162339 -28031325 - L1PA7 LINE L1 -4 6150 5096 760 85 0 0 chr1 254162440 254162558 -28031106 - L1PA7 LINE L1 -1438 4708 4591 * 22035 124 12 47 chr1 254162554 254166621 -28027043 - L1PA7 LINE L1 -2212 3934 10 1840 225 53 4 chr1 254166633 254167140 -28026524 - L1M4 LINE L1 -941 5703 5172 * 5341 225 79 35 chr1 254167135 254170219 -28023445 - L1M4 LINE L1 -2239 4405 1457 2369 82 0 28 chr1 254170219 254170537 -28023127 - AluY SINE Alu -2 309 1 5341 225 79 35 chr1 254170537 254170557 -28023107 - L1M4 LINE L1 -5187 1457 1439 715 172 0 31 chr1 254170557 254170685 -28022979 - FLAM_A SINE Alu -5 128 5 252 0 0 0 chr1 254170685 254170713 -28022951 + (TG)n Simple_repeat Simple_repeat 2 29 0 5341 225 79 35 chr1 254170713 254171773 -28021891 - L1M4 LINE L1 -5204 1440 39 360 333 105 49 chr1 254171798 254172122 -28021542 - L3 LINE CR1 -855 722 381 322 259 184 27 chr1 254172113 254172221 -28021443 + L2 LINE L2 3100 3190 -123 * 180 0 0 0 chr1 254172221 254172241 -28021423 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 322 259 184 27 chr1 254172241 254172317 -28021347 + L2 LINE L2 3190 3313 0 335 329 125 33 chr1 254172328 254172632 -28021032 - L3 LINE CR1 -1182 395 64 21 0 0 0 chr1 254172764 254172785 -28020879 + AT_rich Low_complexity Low_complexity 1 21 0 2260 108 0 0 chr1 254173339 254173635 -28020029 + AluSx SINE Alu 1 296 -16 1678 170 10 43 chr1 254173813 254174113 -28019551 + AluJb SINE Alu 1 290 -22 1678 184 114 25 chr1 254174411 254174813 -28018851 - MLT2B2 LTR ERVL -75 440 3 447 208 68 136 chr1 254174818 254174983 -28018681 + MIR SINE MIR 22 170 -92 892 150 0 0 chr1 254174983 254175116 -28018548 + FLAM_C SINE Alu 1 133 0 447 208 68 136 chr1 254175116 254175171 -28018493 + MIR SINE MIR 170 227 -35 387 299 46 46 chr1 254176176 254176378 -28017286 + MIR SINE MIR 6 206 -56 198 0 0 0 chr1 254177421 254177443 -28016221 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 261 0 0 0 chr1 254177442 254177471 -28016193 + (TG)n Simple_repeat Simple_repeat 1 29 0 585 198 172 5 chr1 254178248 254178440 -28015224 + Charlie1 DNA MER1_type 9 232 -2529 1615 136 77 26 chr1 254178500 254178773 -28014891 + AluSq SINE Alu 7 293 -20 824 220 0 6 chr1 254178803 254178980 -28014684 - MER3 DNA MER1_type -79 130 2 19113 85 4 6 chr1 254179042 254182488 -28011176 - L1PA7 LINE L1 -7 6147 2698 294 302 35 9 chr1 254182586 254182702 -28010962 + MIR SINE MIR 32 150 -112 501 266 68 89 chr1 254182746 254182994 -28010670 + MIR SINE MIR 20 262 0 680 187 19 13 chr1 254183095 254183250 -28010414 - L1MB2 LINE L1 -11 6160 6005 296 257 83 40 chr1 254183924 254184141 -28009523 - MLT1L LTR MaLR -9 606 350 220 276 9 76 chr1 254184703 254184808 -28008856 - MER5B DNA MER1_type -74 104 7 339 209 133 19 chr1 254185057 254185162 -28008502 - LTR33 LTR ERVL -8 513 397 1656 217 85 15 chr1 254185190 254185660 -28008004 - MLT1D LTR MaLR -2 503 1 404 239 168 61 chr1 254185660 254185940 -28007724 - LTR33 LTR ERVL -187 334 25 484 356 153 24 chr1 254189376 254189710 -28003954 - L2 LINE L2 -37 3235 2859 346 272 148 46 chr1 254190549 254190766 -28002898 - MIR SINE MIR -6 256 18 349 304 87 9 chr1 254191077 254191192 -28002472 + MIR SINE MIR 28 151 -57 192 77 0 0 chr1 254191525 254191551 -28002113 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 616 98 54 0 chr1 254192137 254192249 -28001415 + L1MA4A LINE L1 6181 6298 -5 189 114 68 68 chr1 254193011 254193055 -28000609 + MIR SINE MIR 90 133 -75 1784 145 35 3 chr1 254193351 254193669 -27999995 - L1MA4A LINE L1 -6 6297 5970 243 208 57 88 chr1 254194189 254194348 -27999316 - L1MB2 LINE L1 -2336 5472 5319 318 329 111 35 chr1 254194349 254194771 -27998893 - L1MB2 LINE L1 -829 5317 4864 423 252 15 78 chr1 254195329 254195535 -27998129 - MLT1L LTR MaLR -233 382 190 252 260 68 0 chr1 254195578 254195651 -27998013 - MLT1L LTR MaLR -537 78 1 231 211 179 11 chr1 254195717 254195812 -27997852 + MIR SINE MIR 50 160 -102 210 304 0 43 chr1 254197951 254198020 -27995644 + MIR SINE MIR 81 146 -62 956 262 48 8 chr1 254198258 254198510 -27995154 - MIR SINE MIR 0 262 1 336 287 88 15 chr1 254201200 254201336 -27992328 + MIR SINE MIR 1 146 -116 312 237 170 15 chr1 254201604 254201739 -27991925 + MER103 DNA DNA 8 163 -3 1180 211 76 62 chr1 254203296 254203665 -27989999 + MLT1A2 LTR MaLR 1 374 0 30 0 0 0 chr1 254204446 254204476 -27989188 + AT_rich Low_complexity Low_complexity 1 30 0 731 198 47 5 chr1 254205001 254205193 -27988471 - L1PB3 LINE L1 -4 6150 5951 4418 113 10 9 chr1 254205302 254206129 -27987535 - L1PB2 LINE L1 -154 5997 5170 412 267 200 0 chr1 254206133 254206253 -27987411 - MIR3 SINE MIR -63 145 2 289 322 157 0 chr1 254206516 254206631 -27987033 + L2 LINE L2 3181 3313 0 572 298 45 8 chr1 254207114 254207356 -27986308 + MLT1L LTR MaLR 355 605 -10 220 310 90 0 chr1 254207647 254207747 -27985917 + L2 LINE L2 3111 3219 -53 351 258 11 11 chr1 254207769 254207862 -27985802 - MIR SINE MIR 0 262 170 189 320 152 28 chr1 254209916 254210094 -27983570 + L3 LINE CR1 1371 1570 -7 700 181 19 111 chr1 254210132 254210348 -27983316 + MER105 DNA DNA 2 197 -7 396 310 208 9 chr1 254211287 254211503 -27982161 + MIR SINE MIR 1 259 -3 21 36 0 0 chr1 254211803 254211831 -27981833 + AT_rich Low_complexity Low_complexity 1 28 0 448 285 78 67 chr1 254212135 254212479 -27981185 - L1MC4a LINE L1 -1940 5868 5521 328 260 57 32 chr1 254213145 254213268 -27980396 - L2 LINE L2 -2 3270 3145 956 207 39 5 chr1 254214097 254214305 -27979359 + MER20 DNA MER1_type 1 215 -4 1326 186 14 93 chr1 254214518 254214872 -27978792 - MLT1A2 LTR MaLR -48 326 1 925 214 8 21 chr1 254214880 254215118 -27978546 - L1ME1 LINE L1 -261 5905 5671 719 214 50 10 chr1 254215739 254215940 -27977724 - L1ME2 LINE L1 -21 6143 5935 299 155 0 0 chr1 254216179 254216237 -27977427 - L1MA7 LINE L1 -19 6272 6215 189 231 82 97 chr1 254216650 254216784 -27976880 + MIR SINE MIR 20 151 -111 331 220 40 30 chr1 254216835 254216935 -27976729 - MIR SINE MIR -60 202 102 1793 151 17 23 chr1 254217320 254217619 -27976045 + AluSx SINE Alu 4 300 -12 295 371 8 8 chr1 254218200 254218324 -27975340 + L2 LINE L2 2621 2744 -570 754 249 104 81 chr1 254218326 254218673 -27974991 + MLT1L LTR MaLR 3 367 -248 2182 117 3 0 chr1 254218673 254218972 -27974692 - AluSg SINE Alu -10 300 1 754 249 104 81 chr1 254218972 254219131 -27974533 + MLT1L LTR MaLR 367 521 -94 475 277 48 50 chr1 254219273 254219587 -27974077 + MLT1I LTR MaLR 93 448 -2 239 333 83 14 chr1 254219720 254219864 -27973800 + L2 LINE L2 2810 2963 -309 415 250 78 8 chr1 254220034 254220162 -27973502 + MLT1L LTR MaLR 315 451 -164 279 305 40 63 chr1 254220352 254220526 -27973138 - MLT1I LTR MaLR -137 272 103 25 51 0 0 chr1 254221214 254221253 -27972411 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1 254221608 254221649 -27972015 + AT_rich Low_complexity Low_complexity 1 41 0 260 259 35 56 chr1 254222854 254223051 -27970613 - L1ME2 LINE L1 -209 5912 5720 437 275 41 35 chr1 254223295 254223466 -27970198 + MIR3 SINE MIR 29 200 -8 5027 116 25 38 chr1 254223759 254224447 -27969217 - L1PA16 LINE L1 0 6166 5490 2135 120 7 10 chr1 254224447 254224747 -27968917 - AluSg SINE Alu -11 299 1 5027 116 25 38 chr1 254224747 254224961 -27968703 - L1PA16 LINE L1 -676 5490 5275 511 252 0 0 chr1 254226169 254226272 -27967392 - MIR SINE MIR -86 176 74 374 308 14 21 chr1 254226675 254226818 -27966846 + MIR3 SINE MIR 19 160 -48 363 286 19 0 chr1 254227774 254227879 -27965785 - MER94 DNA DNA -27 107 1 2130 236 57 34 chr1 254229002 254229736 -27963928 - L1ME3A LINE L1 -14 6156 5406 1268 275 84 25 chr1 254229728 254230996 -27962668 - L1ME3A LINE L1 -961 5185 3813 * 592 231 39 35 chr1 254231049 254231252 -27962412 + L1MC5 LINE L1 7710 7913 -48 361 290 108 58 chr1 254231425 254231803 -27961861 + L1MCa LINE L1 1012 1623 -4981 326 221 47 0 chr1 254231805 254231891 -27961773 + L1MB4 LINE L1 6051 6140 -40 882 267 88 41 chr1 254231927 254232048 -27961616 + L1MCa LINE L1 1586 1700 -4840 2110 117 3 35 chr1 254232048 254232364 -27961300 + AluSx SINE Alu 1 306 -6 882 267 88 41 chr1 254232364 254233524 -27960140 + L1MCa LINE L1 1700 2924 -3616 231 200 22 0 chr1 254233679 254233724 -27959940 + (TG)n Simple_repeat Simple_repeat 2 47 0 321 250 10 48 chr1 254233749 254233853 -27959811 - L1MC4 LINE L1 -1328 6714 6615 369 211 29 6 chr1 254233866 254234041 -27959623 + (TA)n Simple_repeat Simple_repeat 1 179 0 296 200 41 0 chr1 254234043 254234213 -27959451 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 379 178 47 0 chr1 254234227 254234396 -27959268 + (TA)n Simple_repeat Simple_repeat 1 177 0 270 244 12 12 chr1 254234907 254234989 -27958675 + LTR33A LTR ERVL 440 521 -2 1181 310 29 45 chr1 254235867 254236428 -27957236 + ERVL LTR ERVL 4258 4809 -955 225 269 0 118 chr1 254237552 254237671 -27955993 - MIR SINE MIR -153 109 5 334 318 162 0 chr1 254237926 254238074 -27955590 + MIR SINE MIR 21 192 -70 234 0 0 0 chr1 254238451 254238477 -27955187 + (T)n Simple_repeat Simple_repeat 1 26 0 183 129 0 0 chr1 254238771 254238802 -27954862 + (T)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chr1 254239320 254239342 -27954322 + (T)n Simple_repeat Simple_repeat 1 22 0 198 345 49 74 chr1 254239505 254239630 -27954034 + L2 LINE L2 2904 3024 -248 1575 207 20 14 chr1 254239630 254239987 -27953677 - MLT1A1 LTR MaLR -2 363 5 198 345 49 74 chr1 254239987 254240064 -27953600 + L2 LINE L2 3024 3101 -171 229 375 101 30 chr1 254240234 254240284 -27953380 + L2 LINE L2 2576 2621 -692 1628 184 29 70 chr1 254240284 254240697 -27952967 + MSTD LTR MaLR 1 396 0 229 375 101 30 chr1 254240697 254241087 -27952577 + L2 LINE L2 2621 3048 -265 234 301 48 0 chr1 254241148 254241231 -27952433 + MIR SINE MIR 176 262 0 461 274 57 46 chr1 254242759 254242874 -27950790 - MIR SINE MIR -66 196 77 372 43 0 0 chr1 254242874 254242920 -27950744 + (CA)n Simple_repeat Simple_repeat 1 46 0 461 274 57 46 chr1 254242920 254242979 -27950685 - MIR SINE MIR -185 77 20 467 194 21 32 chr1 254245467 254245560 -27948104 - L2 LINE L2 0 3313 3222 1172 192 67 118 chr1 254245689 254246079 -27947585 - MLT1A2 LTR MaLR -4 370 1 2185 109 0 3 chr1 254246809 254247141 -27946523 + AluSg SINE Alu 1 331 0 21 0 0 0 chr1 254247465 254247486 -27946178 + AT_rich Low_complexity Low_complexity 1 21 0 283 296 25 12 chr1 254247898 254247979 -27945685 + MER5A DNA MER1_type 37 118 -71 298 282 76 15 chr1 254249026 254249157 -27944507 - MIR SINE MIR -6 256 118 1997 140 7 10 chr1 254249159 254249467 -27944197 + AluSx SINE Alu 5 311 -1 2644 70 22 0 chr1 254250066 254250654 -27943010 - L1PA7 LINE L1 -591 5563 4962 * 3401 32 18 0 chr1 254250643 254251044 -27942620 + L1PA7 LINE L1 5568 5975 -179 290 206 159 16 chr1 254251418 254251544 -27942120 + HAL1 LINE L1 52 195 -2312 1821 254 128 60 chr1 254251652 254252037 -27941627 + HAL1 LINE L1 378 735 -1772 2302 84 3 0 chr1 254252037 254252348 -27941316 - AluSq SINE Alu -1 312 1 1821 254 128 60 chr1 254252348 254252549 -27941115 + HAL1 LINE L1 735 921 -1586 180 0 0 0 chr1 254252549 254252569 -27941095 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1821 254 128 60 chr1 254252569 254252999 -27940665 + HAL1 LINE L1 921 1464 -1043 425 56 0 0 chr1 254253032 254253086 -27940578 - MLT2A1 LTR ERVL 0 444 391 287 155 39 0 chr1 254253101 254253204 -27940460 + (TA)n Simple_repeat Simple_repeat 2 108 0 296 91 0 36 chr1 254253211 254253266 -27940398 - MLT2A1 LTR ERVL -37 407 355 2882 93 5 0 chr1 254253275 254253651 -27940013 - MLT2A1 LTR ERVL -66 378 1 1006 145 91 46 chr1 254253886 254254073 -27939591 - L1M3 LINE L1 -505 5663 5461 1828 171 24 56 chr1 254254073 254254448 -27939216 + MLT1A1 LTR MaLR 3 365 0 1006 145 91 46 chr1 254254448 254254501 -27939163 - L1M3 LINE L1 -707 5461 5412 * 2110 126 17 25 chr1 254254499 254254857 -27938807 + L1MB1 LINE L1 5777 6131 -37 1685 88 0 0 chr1 254254857 254255083 -27938581 + L1PA8 LINE L1 5939 6164 -8 306 132 0 0 chr1 254255083 254255130 -27938534 + L1MB1 LINE L1 6115 6167 -1 636 251 129 74 chr1 254255144 254255646 -27938018 + HAL1 LINE L1 1657 2186 -321 1579 262 84 22 chr1 254255647 254256098 -27937566 - MLT1E2 LTR MaLR 0 626 148 305 256 81 106 chr1 254256129 254256289 -27937375 + HAL1 LINE L1 2306 2461 -46 219 36 0 0 chr1 254256406 254256434 -27937230 + (CA)n Simple_repeat Simple_repeat 2 29 0 24 53 0 0 chr1 254256711 254256749 -27936915 + AT_rich Low_complexity Low_complexity 1 38 0 725 258 82 19 chr1 254257328 254257596 -27936068 - L1MEc LINE L1 -4548 1848 1564 3713 156 28 6 chr1 254257600 254258255 -27935409 - Tigger3(Golem) DNA MER2_type -2 3027 2359 901 244 21 13 chr1 254258257 254258491 -27935173 - L1MEc LINE L1 -6138 258 23 2150 82 0 0 chr1 254258638 254258970 -27934694 + AluY SINE Alu 1 332 0 22 0 0 0 chr1 254259128 254259150 -27934514 + AT_rich Low_complexity Low_complexity 1 22 0 514 349 145 31 chr1 254260284 254261186 -27932478 + L2 LINE L2 1859 2863 -451 389 328 127 30 chr1 254261262 254261594 -27932070 + L2 LINE L2 2903 3266 -6 765 228 7 0 chr1 254262046 254262195 -27931469 - MER45A DNA AcHobo -1 177 28 1067 111 19 0 chr1 254262473 254262635 -27931029 - AluSq SINE Alu -14 299 135 2125 91 20 3 chr1 254262636 254262934 -27930730 - AluSq SINE Alu -8 305 3 25 0 0 0 chr1 254263651 254263676 -27929988 + AT_rich Low_complexity Low_complexity 1 25 0 517 261 35 14 chr1 254264656 254264798 -27928866 + MIR SINE MIR 10 154 -108 4009 138 26 60 chr1 254264937 254265743 -27927921 + LTR1 LTR ERV1 7 785 0 396 200 193 22 chr1 254266131 254266266 -27927398 + L1ME4a LINE L1 5710 5867 -254 2045 137 12 3 chr1 254266355 254266683 -27926981 - L1MB2 LINE L1 -3 6168 5838 249 283 182 0 chr1 254267297 254267396 -27926268 - MIR SINE MIR -49 213 97 6611 193 80 20 chr1 254268071 254270998 -27922666 - L1MA5 LINE L1 -2 7000 3722 1065 181 2 2 chr1 254271032 254271270 -27922394 - L1MA5 LINE L1 -3909 2939 2701 577 280 46 6 chr1 254271428 254271603 -27922061 - MIR SINE MIR -66 196 15 268 234 0 78 chr1 254274226 254274303 -27919361 + MIR SINE MIR 103 173 -89 366 261 92 23 chr1 254274327 254274457 -27919207 - MIR SINE MIR -8 254 116 507 138 37 9 chr1 254274566 254274675 -27918989 + CT-rich Low_complexity Low_complexity 4 115 0 272 85 0 85 chr1 254274675 254274722 -27918942 - AluSp SINE Alu -22 280 238 * 303 175 0 18 chr1 254274721 254274778 -27918886 - AluSp SINE Alu -116 187 132 1663 154 0 0 chr1 254274790 254275043 -27918621 - AluSx SINE Alu -59 253 1 180 327 67 29 chr1 254275055 254275159 -27918505 - MIR SINE MIR -137 125 18 1374 139 214 1 chr1 254275883 254276173 -27917491 - L1MC1 LINE L1 -341 5992 5639 274 175 16 0 chr1 254276171 254276234 -27917430 - L1ME1 LINE L1 -7 6159 6096 * 2453 18 0 0 chr1 254276299 254276578 -27917086 - L1HS LINE L1 -2 6153 5875 6564 15 0 0 chr1 254276589 254277845 -27915819 + L1HS LINE L1 4637 5892 -263 597 313 18 5 chr1 254277843 254278067 -27915597 - L1ME1 LINE L1 -56 6110 5884 * 180 0 0 0 chr1 254278082 254278102 -27915562 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 399 288 43 54 chr1 254278177 254278361 -27915303 + MIR SINE MIR 47 228 -34 186 43 0 0 chr1 254278509 254278532 -27915132 + (TGG)n Simple_repeat Simple_repeat 1 23 0 2350 83 0 0 chr1 254279761 254280061 -27913603 - AluSc SINE Alu -9 300 1 550 37 12 12 chr1 254280109 254280191 -27913473 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 1058 206 61 125 chr1 254280191 254280584 -27913080 + MLT1A2 LTR MaLR 7 374 0 566 219 50 148 chr1 254281923 254282201 -27911463 - MIR SINE MIR 0 262 12 516 160 0 0 chr1 254282205 254282305 -27911359 + (CA)n Simple_repeat Simple_repeat 1 100 0 238 145 14 29 chr1 254284674 254284743 -27908921 + GA-rich Low_complexity Low_complexity 6 73 0 231 146 0 0 chr1 254287022 254287063 -27906601 + (CAG)n Simple_repeat Simple_repeat 3 43 0 324 0 0 0 chr1 254288557 254288593 -27905071 + (CA)n Simple_repeat Simple_repeat 2 37 0 387 0 0 0 chr1 254290063 254290106 -27903558 + (CA)n Simple_repeat Simple_repeat 2 44 0 230 254 16 16 chr1 254290565 254290628 -27903036 + Charlie4 DNA MER1_type 1884 1946 -15 278 341 11 0 chr1 254290654 254290745 -27902919 - MER5A DNA MER1_type -92 97 6 253 371 0 0 chr1 254291265 254291389 -27902275 + (CAG)n Simple_repeat Simple_repeat 1 124 0 181 276 244 24 chr1 254292342 254292465 -27901199 - MIR3 SINE MIR -20 188 39 240 35 0 0 chr1 254294367 254294396 -27899268 + (CAGAG)n Simple_repeat Simple_repeat 3 31 0 288 370 7 0 chr1 254296196 254296334 -27897330 - MIR3 SINE MIR -10 198 60 340 291 58 41 chr1 254297074 254297246 -27896418 + MIR SINE MIR 67 241 -21 270 264 55 55 chr1 254297821 254297931 -27895733 + L2 LINE L2 3202 3311 -2 189 277 161 62 chr1 254298202 254298314 -27895350 - MIR SINE MIR -79 129 7 342 329 67 0 chr1 254300243 254300392 -27893272 - MIR SINE MIR -67 195 37 1096 120 5 24 chr1 254301834 254302308 -27891356 + (TCTA)n Simple_repeat Simple_repeat 3 427 0 1096 122 20 5 chr1 254301864 254302481 -27891183 + (TCTA)n Simple_repeat Simple_repeat 1 626 0 183 42 0 0 chr1 254302477 254302501 -27891163 + (CAT)n Simple_repeat Simple_repeat 2 25 0 * 341 270 70 0 chr1 254302503 254302618 -27891046 + MLT1J LTR MaLR 4 126 -264 1794 169 0 3 chr1 254302971 254303283 -27890381 + AluJb SINE Alu 1 311 0 859 251 216 3 chr1 254303306 254303597 -27890067 - MLT1H LTR MaLR -2 547 195 830 233 35 10 chr1 254303913 254304115 -27889549 - MLT1H LTR MaLR -342 207 1 418 169 11 34 chr1 254304462 254304551 -27889113 + MLT1J LTR MaLR 92 178 -333 9085 109 19 12 chr1 254304730 254305871 -27887793 + HSMAR2 DNA Mariner 2 1155 -147 1480 158 96 11 chr1 254305871 254306143 -27887521 - AluJo SINE Alu -14 298 4 9085 109 19 12 chr1 254306143 254306291 -27887373 + HSMAR2 DNA Mariner 1155 1300 -2 2329 218 97 9 chr1 254306658 254307120 -27886544 - L1MD3 LINE L1 -14 7981 7561 222 37 0 0 chr1 254307120 254307147 -27886517 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 261 57 0 0 chr1 254307149 254307184 -27886480 + (TG)n Simple_repeat Simple_repeat 2 36 0 2329 218 97 9 chr1 254307184 254307274 -27886390 - L1MD3 LINE L1 -434 7561 7377 566 164 48 0 chr1 254307291 254307395 -27886269 - MLT1F1 LTR MaLR -453 114 6 342 195 38 0 chr1 254307398 254307495 -27886169 - L1MD3 LINE L1 -580 7228 7129 1609 201 18 58 chr1 254307600 254308074 -27885590 - L1MD3 LINE L1 -436 5720 5207 769 218 0 0 chr1 254308074 254308207 -27885457 - FLAM_A SINE Alu 0 133 1 1609 201 18 58 chr1 254308207 254308317 -27885347 - L1MD3 LINE L1 -949 5207 5094 208 188 217 0 chr1 254308674 254308743 -27884921 + MIR SINE MIR 108 191 -71 207 208 0 21 chr1 254309168 254309216 -27884448 - MIR3 SINE MIR 0 208 162 2195 122 3 0 chr1 254311301 254311596 -27882068 - AluSx SINE Alu -16 296 1 1097 231 34 77 chr1 254311834 254312184 -27881480 + MER102b DNA MER1_type 1 335 -6 324 355 32 32 chr1 254362578 254362764 -27830900 - L1MD3 LINE L1 -1184 4962 4777 511 299 62 41 chr1 254362826 254363072 -27830592 - L1MD3 LINE L1 -1481 4665 4409 2188 101 0 7 chr1 254363072 254363359 -27830305 - AluSx SINE Alu -21 291 7 511 299 62 41 chr1 254363359 254363453 -27830211 - L1MD3 LINE L1 -1737 4409 4318 213 121 0 0 chr1 254363511 254363544 -27830120 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr1 254363700 254363724 -27829940 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1922 137 0 14 chr1 254363948 254364225 -27829439 - AluSc SINE Alu -36 273 1 1989 272 47 29 chr1 254364227 254365129 -27828535 - L1M4 LINE L1 -1643 4503 3586 1696 180 3 11 chr1 254365892 254366203 -27827461 - AluJb SINE Alu 0 309 1 390 287 30 0 chr1 254366250 254366351 -27827313 + L2 LINE L2 2941 3044 -269 282 116 0 0 chr1 254366548 254366591 -27827073 + (A)n Simple_repeat Simple_repeat 1 43 0 523 275 89 31 chr1 254366757 254367015 -27826649 - L1M4 LINE L1 -1562 4584 4312 392 310 102 56 chr1 254367208 254367511 -27826153 - L1ME4a LINE L1 -1 6120 5804 2230 90 57 0 chr1 254367623 254367955 -27825709 + L1PB1 LINE L1 5800 6150 -1 402 75 0 0 chr1 254368021 254368105 -27825559 + Alu SINE Alu 227 310 0 7092 202 92 25 chr1 254368105 254370017 -27823647 + L1MDa LINE L1 86 2126 -4414 207 222 50 81 chr1 254370260 254370359 -27823305 + MIR3 SINE MIR 98 193 -15 351 275 8 0 chr1 254370707 254370827 -27822837 - L1MC4 LINE L1 -141 7901 7781 255 172 17 17 chr1 254373840 254373898 -27819766 + GA-rich Low_complexity Low_complexity 1 58 0 198 354 13 0 chr1 254376566 254376645 -27817019 - MIR SINE MIR -69 139 60 1355 280 83 26 chr1 254376697 254377275 -27816389 + MLT2F LTR ERVL 48 658 -5 660 143 29 14 chr1 254378309 254378449 -27815215 - MER53 DNA DNA -46 143 2 245 228 31 31 chr1 254379102 254379229 -27814435 - L1ME4a LINE L1 -11 6110 5984 22 35 0 0 chr1 254379229 254379258 -27814406 + AT_rich Low_complexity Low_complexity 1 29 0 1975 144 3 44 chr1 254379685 254380024 -27813640 - MER1B DNA MER1_type -1 338 14 279 326 98 0 chr1 254380591 254380723 -27812941 - MIR SINE MIR -15 247 103 * 474 236 122 8 chr1 254380713 254380836 -27812828 + MIR SINE MIR 13 149 -113 292 146 12 49 chr1 254380879 254380961 -27812703 - L1MB8 LINE L1 0 6178 6100 810 123 2 118 chr1 254380979 254380999 -27812665 - L1PA15 LINE L1 -125 6031 6010 2017 124 0 56 chr1 254380999 254381321 -27812343 - AluSx SINE Alu -8 304 1 810 123 2 118 chr1 254381321 254381507 -27812157 - L1PA15 LINE L1 -146 6010 5848 223 319 7 121 chr1 254382693 254382792 -27810872 - L2 LINE L2 -3 3269 3189 2152 95 3 29 chr1 254382792 254383098 -27810566 + AluSx SINE Alu 1 298 -14 223 319 7 121 chr1 254383098 254383139 -27810525 - L2 LINE L2 -83 3189 3145 267 105 0 0 chr1 254384070 254384108 -27809556 - MLT2D LTR ERVL 0 414 377 207 0 0 0 chr1 254384114 254384137 -27809527 + (CA)n Simple_repeat Simple_repeat 2 24 0 314 279 7 22 chr1 254384137 254384273 -27809391 + (TA)n Simple_repeat Simple_repeat 1 134 0 1600 205 11 25 chr1 254384307 254384663 -27809001 - MLT2D LTR ERVL -60 354 4 1894 74 93 0 chr1 254384722 254385022 -27808642 - AluY SINE Alu 0 324 1 1426 240 121 69 chr1 254385793 254387057 -27806607 - HAL1 LINE L1 -208 2299 970 1944 140 0 7 chr1 254387060 254387353 -27806311 - AluSx SINE Alu -21 291 1 235 282 0 0 chr1 254387560 254387631 -27806033 - MLT1I LTR MaLR -269 140 70 213 258 15 15 chr1 254387663 254387729 -27805935 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 250 353 50 20 chr1 254388783 254388984 -27804680 + L2 LINE L2 2523 2729 -585 225 0 0 0 chr1 254389112 254389137 -27804527 + (CA)n Simple_repeat Simple_repeat 1 25 0 192 322 0 0 chr1 254389733 254389792 -27803872 + L2 LINE L2 3255 3313 0 228 327 27 27 chr1 254390317 254390427 -27803237 - L2 LINE L2 -161 3111 3002 257 100 20 0 chr1 254390899 254390949 -27802715 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 268 349 92 20 chr1 254390949 254391190 -27802474 + L2 LINE L2 1766 2027 -1287 1739 164 20 0 chr1 254392039 254392344 -27801320 + L1PB4 LINE L1 5838 6148 -8 1642 145 71 28 chr1 254392982 254393264 -27800400 + AluSx SINE Alu 1 294 -18 322 399 74 10 chr1 254393990 254394193 -27799471 + MIR SINE MIR 29 244 -18 288 181 29 36 chr1 254394790 254394928 -27798736 + (CATATA)n Simple_repeat Simple_repeat 2 138 0 586 263 12 0 chr1 254394943 254395103 -27798561 - MER63A DNA MER1_type 0 210 49 226 325 75 0 chr1 254396069 254396149 -27797515 + MIR SINE MIR 42 127 -81 253 369 66 37 chr1 254396339 254396580 -27797084 - L2 LINE L2 -658 2656 2409 182 62 31 0 chr1 254396589 254396621 -27797043 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 259 344 75 38 chr1 254396634 254396846 -27796818 + L2 LINE L2 1750 1969 -1345 543 290 125 32 chr1 254397004 254397097 -27796567 - L1ME4a LINE L1 -28 6093 6010 2330 65 0 0 chr1 254397097 254397391 -27796273 - AluY SINE Alu -17 294 1 543 290 125 32 chr1 254397391 254398025 -27795639 - L1ME4a LINE L1 -111 6010 5295 2531 74 0 0 chr1 254398171 254398482 -27795182 + AluY SINE Alu 1 311 0 23 0 0 0 chr1 254398605 254398628 -27795036 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr1 254398674 254398709 -27794955 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 254398763 254398784 -27794880 + AT_rich Low_complexity Low_complexity 1 21 0 337 280 34 42 chr1 254399217 254399335 -27794329 + MIR SINE MIR 72 188 -74 390 313 78 11 chr1 254400083 254400262 -27793402 - MIR3 SINE MIR -10 198 8 6705 52 0 1 chr1 254400783 254401667 -27791997 + L1P LINE L1 4401 5283 -863 2240 115 0 7 chr1 254401669 254401965 -27791699 - AluSc SINE Alu -15 294 1 2225 114 0 10 chr1 254402096 254402404 -27791260 - AluY SINE Alu -6 305 1 212 400 136 19 chr1 254402989 254403144 -27790520 + L2 LINE L2 3091 3263 -9 225 367 124 0 chr1 254404438 254404607 -27789057 - L2 LINE L2 -11 3261 3072 2702 131 14 2 chr1 254404708 254405135 -27788529 - MER57B LTR ERV1 -2 432 1 273 119 0 0 chr1 254407122 254407164 -27786500 + (CA)n Simple_repeat Simple_repeat 2 43 0 1925 117 3 71 chr1 254408839 254409163 -27784501 + AluSg SINE Alu 1 302 -8 204 135 0 0 chr1 254409436 254409473 -27784191 + (CAT)n Simple_repeat Simple_repeat 3 39 0 218 236 0 14 chr1 254409539 254409611 -27784053 + CT-rich Low_complexity Low_complexity 2 72 0 202 312 0 52 chr1 254410664 254410741 -27782923 - L2 LINE L2 -2 3311 3239 184 298 144 10 chr1 254410857 254410961 -27782703 - L2 LINE L2 -204 3068 2951 251 226 75 0 chr1 254411939 254412032 -27781632 - L1ME LINE L1 -224 5897 5798 288 211 14 14 chr1 254412088 254412159 -27781505 - L1ME LINE L1 -422 5699 5629 520 205 76 5 chr1 254412692 254412829 -27780835 - L1MA9 LINE L1 -26 6277 6138 332 302 0 0 chr1 254412982 254413068 -27780596 + CT-rich Low_complexity Low_complexity 3 88 0 2994 181 63 39 chr1 254413337 254413476 -27780188 + L1MA9 LINE L1 5556 5690 -622 2207 99 10 0 chr1 254413476 254413778 -27779886 + AluSc SINE Alu 1 305 -4 2994 181 63 39 chr1 254413778 254413877 -27779787 + L1MA9 LINE L1 5690 5785 -527 315 0 0 0 chr1 254413877 254413912 -27779752 + (CA)n Simple_repeat Simple_repeat 2 36 0 2994 181 63 39 chr1 254413912 254414374 -27779290 + L1MA9 LINE L1 5785 6274 -38 22 0 0 0 chr1 254414489 254414511 -27779153 + AT_rich Low_complexity Low_complexity 1 22 0 253 240 160 0 chr1 254415190 254415265 -27778399 - MIR SINE MIR -44 218 132 609 208 28 39 chr1 254415266 254415444 -27778220 + Charlie1 DNA MER1_type 2585 2760 -1 3047 225 72 22 chr1 254415498 254416442 -27777222 - L1ME1 LINE L1 -7 6228 5239 711 198 8 0 chr1 254416451 254416577 -27777087 - FLAM_C SINE Alu -16 127 1 280 140 0 0 chr1 254416578 254416628 -27777036 - L1ME1 LINE L1 -957 5258 5209 452 274 7 0 chr1 254416678 254416824 -27776840 - L1ME1 LINE L1 -1033 5182 5036 910 209 43 20 chr1 254416835 254417088 -27776576 - L1ME1 LINE L1 -1314 4901 4643 4735 249 69 39 chr1 254417136 254420447 -27773217 - L1ME1 LINE L1 -2794 3421 38 421 292 227 29 chr1 254420727 254421110 -27772554 + MLT1H LTR MaLR 59 517 -32 387 0 0 0 chr1 254421238 254421281 -27772383 + (TTA)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chr1 254421413 254421439 -27772225 + AT_rich Low_complexity Low_complexity 1 26 0 401 308 64 13 chr1 254421572 254421728 -27771936 - MIR SINE MIR -64 198 35 480 294 77 49 chr1 254422477 254422763 -27770901 - L2 LINE L2 -12 3301 3008 2010 111 105 33 chr1 254425376 254425630 -27768034 + MLT1B LTR MaLR 1 290 -100 1610 194 52 30 chr1 254425630 254425996 -27767668 - MLT1A2 LTR MaLR 0 374 1 2010 111 105 33 chr1 254425996 254426103 -27767561 + MLT1B LTR MaLR 290 388 -2 1297 242 30 38 chr1 254426197 254426565 -27767099 - MLT1A1 LTR MaLR 0 365 1 792 225 90 57 chr1 254427615 254428020 -27765644 - MLT1H LTR MaLR 0 549 108 7883 189 56 75 chr1 254429280 254429860 -27763804 - L1MC3 LINE L1 0 8065 7475 254 267 33 22 chr1 254429860 254429950 -27763714 - MLT1F1 LTR MaLR -442 125 35 7883 189 56 75 chr1 254429950 254431495 -27762169 - L1MC3 LINE L1 -590 7475 5894 894 240 140 47 chr1 254431497 254431818 -27761846 + MLT1A1 LTR MaLR 3 353 -12 1117 204 82 39 chr1 254431829 254432392 -27761272 - L1MC3 LINE L1 -780 5646 5315 * 7402 171 16 45 chr1 254432387 254435035 -27758629 + L1PA16 LINE L1 3564 6157 -9 3714 257 17 6 chr1 254435055 254436173 -27757491 - L1MC3 LINE L1 -1616 4810 3681 39478 74 9 12 chr1 254436418 254442234 -27751430 + L1P2 LINE L1 11 5809 -345 3603 219 29 49 chr1 254442339 254443570 -27750094 - L1MC3 LINE L1 -2884 3542 2377 2123 167 18 23 chr1 254443576 254443966 -27749698 - MLT1B LTR MaLR -2 388 1 1651 204 115 17 chr1 254443969 254444943 -27748721 - L1MC3 LINE L1 -4095 2331 1164 641 149 8 258 chr1 254446160 254446516 -27747148 - L1MC3 LINE L1 -5239 1187 921 1158 144 0 0 chr1 254446521 254446701 -27746963 - L1PB4 LINE L1 -185 5971 5792 994 134 73 0 chr1 254446701 254446863 -27746801 + L1PB4 LINE L1 5981 6156 0 256 269 68 5 chr1 254446863 254446958 -27746706 - L1MC3 LINE L1 -4985 922 825 251 250 0 0 chr1 254447002 254447054 -27746610 + MIR SINE MIR 211 262 0 301 296 0 0 chr1 254448104 254448192 -27745472 + L1MC4 LINE L1 6609 6696 -1346 2211 100 0 3 chr1 254448193 254448483 -27745181 - AluSq SINE Alu -23 290 2 409 304 18 1 chr1 254448650 254448780 -27744884 + MIR SINE MIR 17 146 -62 2148 116 0 0 chr1 254448824 254449141 -27744523 - AluSq SINE Alu 0 313 1 552 315 84 33 chr1 254449339 254449669 -27743995 + LTR16C LTR ERVL 81 436 -55 195 42 0 0 chr1 254449669 254449693 -27743971 + (CCA)n Simple_repeat Simple_repeat 3 26 0 552 315 84 33 chr1 254449693 254449753 -27743911 + LTR16C LTR ERVL 436 491 0 209 369 36 0 chr1 254450721 254450805 -27742859 + L3 LINE CR1 458 544 -1033 216 272 208 25 chr1 254450865 254451067 -27742597 + MIR SINE MIR 24 262 0 873 263 72 5 chr1 254451271 254451480 -27742184 + MER58A DNA MER1_type 1 223 -1 959 126 0 0 chr1 254452094 254452229 -27741435 - FRAM SINE Alu -22 154 20 24 0 0 0 chr1 254452330 254452354 -27741310 + AT_rich Low_complexity Low_complexity 1 24 0 309 214 12 12 chr1 254452354 254452438 -27741226 - L1PB4 LINE L1 -3 6153 6070 2366 140 3 6 chr1 254452822 254453187 -27740477 + THE1B LTR MaLR 1 364 0 284 287 56 46 chr1 254453317 254453425 -27740239 - MIR3 SINE MIR -47 161 53 572 318 61 20 chr1 254454868 254455428 -27738236 + HAL1 LINE L1 1078 1660 -847 2166 161 46 0 chr1 254455687 254456060 -27737604 - MLT1B LTR MaLR 0 390 1 394 287 56 56 chr1 254456380 254456969 -27736695 + L1M4 LINE L1 2140 2728 -3418 395 254 79 54 chr1 254457081 254457435 -27736229 + L1M4 LINE L1 2956 3318 -2828 21 0 0 0 chr1 254457528 254457549 -27736115 + AT_rich Low_complexity Low_complexity 1 21 0 385 184 0 0 chr1 254457607 254457683 -27735981 - L1M4 LINE L1 -1216 4930 4855 1885 180 6 3 chr1 254457695 254458006 -27735658 + AluSx SINE Alu 1 312 0 234 91 0 0 chr1 254458016 254458049 -27735615 + (GAAAA)n Simple_repeat Simple_repeat 4 36 0 315 220 202 9 chr1 254458049 254458158 -27735506 - L1M4 LINE L1 -1287 4859 4730 21 36 0 0 chr1 254458557 254458585 -27735079 + AT_rich Low_complexity Low_complexity 1 28 0 1872 118 4 18 chr1 254458787 254459067 -27734597 - AluSx SINE Alu -36 276 1 785 287 31 28 chr1 254459837 254460091 -27733573 - MIR SINE MIR 0 262 8 547 278 135 25 chr1 254461483 254461764 -27731900 + MLT1K LTR MaLR 277 588 0 210 339 0 0 chr1 254461766 254461825 -27731839 - L2 LINE L2 -28 3244 3186 224 298 85 32 chr1 254461914 254462008 -27731656 - L2 LINE L2 -570 2744 2646 1919 144 0 14 chr1 254462155 254462439 -27731225 - AluSx SINE Alu -32 280 1 2476 203 4 29 chr1 254462778 254463296 -27730368 - MLT1D LTR MaLR 0 505 1 212 232 130 14 chr1 254464049 254464118 -27729546 - L2 LINE L2 -1 3312 3236 2133 120 0 0 chr1 254464194 254464478 -27729186 + AluSx SINE Alu 1 284 -28 21 0 0 0 chr1 254464537 254464558 -27729106 + AT_rich Low_complexity Low_complexity 1 21 0 2231 72 0 34 chr1 254464876 254465197 -27728467 - AluY SINE Alu 0 311 1 1522 165 45 19 chr1 254465197 254465464 -27728200 - AluJo SINE Alu -5 307 34 359 356 113 19 chr1 254465497 254465907 -27727757 - L2 LINE L2 -254 3018 2561 198 388 26 0 chr1 254466284 254466400 -27727264 + MIR SINE MIR 19 137 -71 352 318 126 13 chr1 254466517 254466697 -27726967 + MIR SINE MIR 9 206 -56 540 275 0 0 chr1 254468239 254468381 -27725283 + L1PB4 LINE L1 6013 6154 -2 402 253 10 0 chr1 254468568 254468667 -27724997 - MER63 DNA MER1_type -84 752 27 23 0 0 0 chr1 254469068 254469091 -27724573 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr1 254469576 254469602 -27724062 + AT_rich Low_complexity Low_complexity 1 26 0 207 69 0 0 chr1 254470466 254470495 -27723169 + (ATG)n Simple_repeat Simple_repeat 2 30 0 912 181 136 9 chr1 254470509 254470730 -27722934 - MIR SINE MIR -6 256 8 741 217 5 11 chr1 254470959 254471148 -27722516 + MER53 DNA DNA 2 189 0 231 324 28 0 chr1 254471680 254471751 -27721913 + L2 LINE L2 3191 3263 -9 * 295 326 91 15 chr1 254471722 254471854 -27721810 - L2 LINE L2 0 3313 3172 410 240 123 31 chr1 254471947 254472110 -27721554 + MIR3 SINE MIR 32 204 -47 205 96 0 58 chr1 254472114 254472166 -27721498 + (TATAA)n Simple_repeat Simple_repeat 5 53 0 888 229 90 61 chr1 254472306 254472416 -27721248 + MIR SINE MIR 1 106 -156 2250 81 0 11 chr1 254472416 254472738 -27720926 - AluSg SINE Alu 0 319 1 888 229 90 61 chr1 254472738 254472871 -27720793 + MIR SINE MIR 106 252 -10 298 152 19 48 chr1 254473852 254473957 -27719707 + GA-rich Low_complexity Low_complexity 2 103 0 325 358 121 12 chr1 254474726 254474891 -27718773 - MIR3 SINE MIR -6 202 20 388 63 16 32 chr1 254475303 254475366 -27718298 + L1MA3 LINE L1 5890 5951 -354 349 204 184 0 chr1 254475415 254475518 -27718146 + L2 LINE L2 3150 3271 -1 222 118 0 0 chr1 254475695 254475729 -27717935 + (T)n Simple_repeat Simple_repeat 1 34 0 225 303 15 15 chr1 254476475 254476541 -27717123 + MIR3 SINE MIR 137 202 -6 399 73 0 0 chr1 254479281 254479336 -27714328 + (TG)n Simple_repeat Simple_repeat 1 55 0 421 253 188 7 chr1 254480189 254480343 -27713321 - MIR SINE MIR -79 183 2 1694 161 7 21 chr1 254480577 254480863 -27712801 - AluJo SINE Alu -30 282 1 312 281 21 63 chr1 254480866 254481033 -27712631 - MIR SINE MIR -67 195 37 180 179 0 26 chr1 254481215 254481254 -27712410 - L2 LINE L2 -2592 722 685 216 326 0 53 chr1 254481529 254481658 -27712006 + MIR SINE MIR 34 155 -72 288 276 76 44 chr1 254483642 254483867 -27709797 + L1MEd LINE L1 596 827 -5292 253 204 37 9 chr1 254484504 254484612 -27709052 + (TG)n Simple_repeat Simple_repeat 2 112 0 240 121 15 30 chr1 254485185 254485251 -27708413 + (TG)n Simple_repeat Simple_repeat 2 66 0 290 163 0 0 chr1 254485601 254485650 -27708014 + L2 LINE L2 3265 3313 0 361 169 0 0 chr1 254485673 254485732 -27707932 + MIR SINE MIR 110 168 -94 306 288 45 9 chr1 254485759 254485870 -27707794 + MIR SINE MIR 148 262 0 828 262 16 5 chr1 254487644 254487831 -27705833 + MER5A DNA MER1_type 1 189 0 283 317 109 0 chr1 254488497 254488598 -27705066 + MIR3 SINE MIR 66 177 -31 1984 132 3 35 chr1 254488811 254489129 -27704535 - AluSq SINE Alu -2 311 4 197 253 0 12 chr1 254489794 254489877 -27703787 + GA-rich Low_complexity Low_complexity 1 82 0 212 246 53 18 chr1 254489988 254490045 -27703619 - L2 LINE L2 -2073 1241 1183 1937 191 48 37 chr1 254490084 254490546 -27703118 - MLT1C LTR MaLR 0 467 1 1863 148 3 30 chr1 254490556 254490859 -27702805 + AluJb SINE Alu 1 295 -17 668 271 81 77 chr1 254491047 254491539 -27702125 + MLT1G1 LTR MaLR 5 461 -81 332 146 0 0 chr1 254491824 254491879 -27701785 + MLT1G1 LTR MaLR 532 586 -9 295 334 111 50 chr1 254493210 254493626 -27700038 - L2 LINE L2 0 3313 2873 1298 244 77 97 chr1 254494149 254494486 -27699178 - MLT2F LTR ERVL 0 663 344 774 89 0 0 chr1 254494486 254494598 -27699066 + (GGA)n Simple_repeat Simple_repeat 1 112 0 1298 244 77 97 chr1 254494598 254494932 -27698732 - MLT2F LTR ERVL -319 344 5 326 284 21 5 chr1 254495264 254495458 -27698206 - L1M4 LINE L1 -802 5344 5148 1401 233 36 19 chr1 254495668 254496088 -27697576 - L1M4 LINE L1 -1908 4238 3812 22 0 0 0 chr1 254496129 254496151 -27697513 + AT_rich Low_complexity Low_complexity 1 22 0 250 113 19 19 chr1 254496627 254496680 -27696984 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 182 263 11 0 chr1 254496727 254496822 -27696842 + (TA)n Simple_repeat Simple_repeat 2 97 0 21 57 0 0 chr1 254496923 254496958 -27696706 + AT_rich Low_complexity Low_complexity 1 35 0 271 282 77 55 chr1 254497034 254497595 -27696069 + L1ME LINE L1 2884 3456 -2690 318 266 52 99 chr1 254497692 254497925 -27695739 + L1ME LINE L1 3547 3768 -2378 264 30 0 0 chr1 254497934 254497967 -27695697 + (TATG)n Simple_repeat Simple_repeat 2 34 0 1313 199 33 4 chr1 254497968 254498209 -27695455 - AluJo SINE Alu -30 282 35 303 167 0 0 chr1 254498209 254498257 -27695407 + AluJ/FLAM SINE Alu 21 68 -234 21 36 0 0 chr1 254498260 254498288 -27695376 + AT_rich Low_complexity Low_complexity 1 28 0 416 315 34 41 chr1 254498290 254498590 -27695074 + L1ME LINE L1 3793 4091 -2055 2422 54 0 10 chr1 254498590 254498886 -27694778 - AluY SINE Alu -18 293 1 416 315 34 41 chr1 254498886 254499001 -27694663 + L1ME LINE L1 4091 4205 -1941 281 359 82 20 chr1 254499028 254499223 -27694441 + LTR16A LTR ERVL 16 222 -228 31 26 0 0 chr1 254499548 254499586 -27694078 + AT_rich Low_complexity Low_complexity 1 38 0 1753 146 20 37 chr1 254499586 254499881 -27693783 - AluJo SINE Alu -22 290 1 2820 13 0 3 chr1 254501126 254501442 -27692222 + AluYb8 SINE Alu 1 315 -3 301 246 30 94 chr1 254501445 254501767 -27691897 + L1ME LINE L1 5197 5480 -684 1995 145 37 0 chr1 254501767 254502063 -27691601 + AluSx SINE Alu 1 307 -5 301 246 30 94 chr1 254502063 254502191 -27691473 + L1ME LINE L1 5480 5615 -549 271 154 138 15 chr1 254502679 254502744 -27690920 + L2 LINE L2 3199 3271 -1 198 0 0 0 chr1 254502969 254502991 -27690673 + (TC)n Simple_repeat Simple_repeat 1 22 0 961 213 15 0 chr1 254503026 254503223 -27690441 + MLT1B LTR MaLR 184 383 -7 353 147 13 27 chr1 254503305 254503380 -27690284 - MER50 LTR ERV1 -660 74 1 307 148 0 19 chr1 254503380 254503434 -27690230 - MER50-int LTR ERV1 -8 7197 7145 228 114 0 0 chr1 254503759 254503803 -27689861 - L1MA8 LINE L1 -2 6289 6246 201 390 42 0 chr1 254504164 254504252 -27689412 + L2 LINE L2 3103 3194 -78 529 293 153 0 chr1 254504252 254504409 -27689255 - MER5A DNA MER1_type 0 189 9 717 241 72 0 chr1 254504492 254504658 -27689006 - MER5B DNA MER1_type 0 178 1 185 310 190 0 chr1 254504663 254504763 -27688901 + L2 LINE L2 3153 3271 -1 800 164 0 8 chr1 254505589 254505723 -27687941 - FLAM_C SINE Alu -5 138 6 1203 223 91 46 chr1 254505728 254506181 -27687483 - MER63C DNA MER1_type -457 473 1 577 218 183 30 chr1 254506238 254506435 -27687229 + MIR SINE MIR 2 228 -34 225 135 0 0 chr1 254506713 254506750 -27686914 + MER116 DNA Mariner 4 40 -40 4474 197 40 6 chr1 254506757 254508292 -27685372 - L1MB7 LINE L1 -13 6171 4556 7181 51 26 1 chr1 254508292 254509167 -27684497 - MER11D LTR ERVK 0 897 1 4474 197 40 6 chr1 254509167 254509548 -27684116 - L1MB7 LINE L1 -1628 4556 4189 1252 209 4 0 chr1 254509548 254509821 -27683843 + L1PA13 LINE L1 4410 4683 -1463 456 209 23 31 chr1 254509822 254509951 -27683713 - MER63 DNA MER1_type -802 128 1 5906 113 20 9 chr1 254510011 254511428 -27682236 + L1PA13 LINE L1 4631 6158 -5 1226 201 4 18 chr1 254511438 254511711 -27681953 - L1MB7 LINE L1 -1955 4191 3923 963 244 20 4 chr1 254512081 254512331 -27681333 - MER46C DNA MER2_type -12 326 73 317 279 120 57 chr1 254513495 254513653 -27680011 - MIR3 SINE MIR -11 197 30 466 262 40 20 chr1 254514402 254514551 -27679113 - MIR SINE MIR -3 259 108 653 258 22 28 chr1 254514995 254515177 -27678487 + MIR SINE MIR 78 258 -4 1976 117 0 83 chr1 254516601 254516926 -27676738 - AluSp SINE Alu -13 300 3 261 0 0 0 chr1 254517125 254517154 -27676510 + (CA)n Simple_repeat Simple_repeat 2 30 0 1238 218 51 137 chr1 254517577 254518163 -27675501 + MLT1F LTR MaLR 1 536 -6 12546 119 5 32 chr1 254518315 254521479 -27672185 + L1PA7 LINE L1 8 3155 -3306 1371 133 0 0 chr1 254521479 254521703 -27671961 + AluSg/x SINE Alu 87 310 0 7470 111 0 2 chr1 254521703 254522895 -27670769 + L1PA7 LINE L1 3149 4337 -2124 6493 69 27 0 chr1 254522895 254524261 -27669403 + L1PA7 LINE L1 5063 6455 -14 231 36 0 0 chr1 254524264 254524292 -27669372 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 31 26 0 0 chr1 254526383 254526421 -27667243 + AT_rich Low_complexity Low_complexity 1 38 0 287 253 28 46 chr1 254526471 254526611 -27667053 + MIR3 SINE MIR 70 208 0 2148 124 0 26 chr1 254527278 254527584 -27666080 + AluSx SINE Alu 1 298 -14 245 317 81 50 chr1 254528295 254528456 -27665208 + MIR SINE MIR 47 212 -50 1219 287 83 25 chr1 254529762 254530367 -27663297 + ERVL LTR ERVL 3496 4463 -1301 591 339 15 32 chr1 254530582 254530920 -27662744 + ERVL LTR ERVL 4475 4860 -904 2481 81 0 0 chr1 254530920 254531227 -27662437 + AluSq SINE Alu 1 307 -6 591 339 15 32 chr1 254531227 254531434 -27662230 + ERVL LTR ERVL 4860 5069 -695 2276 34 0 58 chr1 254532339 254532632 -27661032 - AluY SINE Alu -35 276 1 397 277 151 0 chr1 254533684 254533850 -27659814 - L2 LINE L2 -19 3294 3104 * 660 248 118 42 chr1 254533830 254534068 -27659596 - L2 LINE L2 -357 2957 2702 2173 248 23 20 chr1 254534084 254534782 -27658882 - L1ME2 LINE L1 0 6233 5534 799 295 102 28 chr1 254534758 254535479 -27658185 - L1ME2 LINE L1 -4445 1951 1129 * 324 305 85 0 chr1 254535631 254535808 -27657856 - L1ME2 LINE L1 -5326 791 600 446 373 104 17 chr1 254536229 254536583 -27657081 - L1ME2 LINE L1 -5920 476 92 4128 127 28 7 chr1 254536625 254537341 -27656323 - L1MA8 LINE L1 -2 6289 5559 2316 81 3 31 chr1 254537591 254537913 -27655751 - AluSq SINE Alu 0 313 1 214 401 36 0 chr1 254538144 254538281 -27655383 - MIR3 SINE MIR -59 149 8 1980 188 32 28 chr1 254538511 254539060 -27654604 + MLT2A2 LTR ERVL 1 554 0 890 228 35 10 chr1 254540877 254541079 -27652585 + MIR SINE MIR 35 241 -21 2425 62 0 3 chr1 254541177 254541484 -27652180 - AluY SINE Alu -5 306 1 186 244 13 90 chr1 254541504 254541582 -27652082 - MIR SINE MIR -73 189 118 22 70 0 0 chr1 254541733 254541776 -27651888 + AT_rich Low_complexity Low_complexity 1 43 0 318 350 10 0 chr1 254541810 254541913 -27651751 - L2 LINE L2 -13 3300 3197 296 314 58 33 chr1 254541921 254542042 -27651622 + L2 LINE L2 3179 3302 -11 385 246 144 24 chr1 254542053 254542220 -27651444 - MIR SINE MIR -4 258 72 21 0 0 0 chr1 254542732 254542753 -27650911 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr1 254543089 254543120 -27650544 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 254543177 254543198 -27650466 + AT_rich Low_complexity Low_complexity 1 21 0 341 313 74 92 chr1 254543377 254543661 -27650003 + L1MEd LINE L1 2 280 -5839 803 301 76 24 chr1 254543741 254544282 -27649382 + L1MEd LINE L1 513 1081 -5038 240 213 0 0 chr1 254544294 254544355 -27649309 + (TA)n Simple_repeat Simple_repeat 2 62 0 321 310 55 7 chr1 254544355 254544500 -27649164 - L1MEd LINE L1 -5370 749 598 318 243 0 0 chr1 254544500 254544603 -27649061 + (TA)n Simple_repeat Simple_repeat 2 104 0 378 189 27 9 chr1 254545060 254545171 -27648493 + CT-rich Low_complexity Low_complexity 4 116 0 4047 95 189 48 chr1 254545361 254546085 -27647579 + LTR12 LTR ERV1 1 826 0 199 260 20 20 chr1 254546173 254546223 -27647441 + L2 LINE L2 3250 3299 -14 266 104 0 21 chr1 254546480 254546528 -27647136 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 607 203 27 7 chr1 254547410 254547558 -27646106 + MLT1H LTR MaLR 1 151 -398 496 166 38 32 chr1 254547696 254547853 -27645811 + GA-rich Low_complexity Low_complexity 4 161 0 1085 247 8 12 chr1 254547950 254548205 -27645459 + MLT1H LTR MaLR 13 266 -283 2463 85 0 0 chr1 254548206 254548512 -27645152 - AluY SINE Alu -5 306 1 616 230 18 24 chr1 254548527 254548692 -27644972 + MLT1H LTR MaLR 383 546 -3 526 297 24 0 chr1 254548696 254548905 -27644759 - L1ME LINE L1 -363 5758 5545 545 291 110 16 chr1 254548918 254549267 -27644397 - L2 LINE L2 -220 3093 2715 641 252 48 65 chr1 254549303 254549533 -27644131 - MIR SINE MIR -4 258 33 267 301 178 0 chr1 254549541 254549687 -27643977 - L2 LINE L2 -594 2720 2549 306 249 99 22 chr1 254549762 254549943 -27643721 - L1ME LINE L1 -2359 5449 5255 27 0 0 0 chr1 254550438 254550465 -27643199 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 254550654 254550675 -27642989 + AT_rich Low_complexity Low_complexity 1 21 0 306 267 15 7 chr1 254551931 254552066 -27641598 + CT-rich Low_complexity Low_complexity 3 138 0 399 41 0 0 chr1 254552200 254552249 -27641415 + (CA)n Simple_repeat Simple_repeat 2 50 0 222 365 60 12 chr1 254553140 254553307 -27640357 + MIR3 SINE MIR 22 196 -12 2549 145 42 30 chr1 254554057 254554109 -27639555 - L1MB3 LINE L1 0 6183 6133 2086 74 0 0 chr1 254554109 254554366 -27639298 - AluSc SINE Alu -23 286 30 2549 145 42 30 chr1 254554366 254554811 -27638853 - L1MB3 LINE L1 -50 6133 5680 379 264 74 8 chr1 254554934 254555055 -27638609 + L2 LINE L2 3142 3270 -2 1868 273 83 56 chr1 254555209 254556555 -27637109 - Charlie2a DNA MER1_type -1 2861 1473 234 300 0 0 chr1 254556689 254556749 -27636915 - Charlie2a DNA MER1_type -2165 617 558 1014 265 140 32 chr1 254556750 254557157 -27636507 - Charlie2a DNA MER1_type -2327 455 5 5169 98 12 3 chr1 254557264 254558012 -27635652 - L1PA13 LINE L1 -1 6162 5408 311 294 15 15 chr1 254559936 254560072 -27633592 + MLT1L LTR MaLR 144 279 -336 539 283 150 0 chr1 254560271 254560444 -27633220 + MIR SINE MIR 64 262 0 2172 101 7 0 chr1 254560454 254560742 -27632922 - AluY SINE Alu -21 290 1 23 0 0 0 chr1 254560808 254560831 -27632833 + AT_rich Low_complexity Low_complexity 1 23 0 626 286 149 8 chr1 254560862 254561124 -27632540 + L2 LINE L2 3015 3313 0 834 170 152 0 chr1 254561367 254561538 -27632126 - MLT2C1 LTR ERVL -82 315 119 392 54 0 18 chr1 254561545 254561601 -27632063 + MADE1 DNA Mariner 25 79 -1 514 217 35 0 chr1 254561601 254561716 -27631948 - MLT2C1 LTR ERVL -278 119 1 392 272 26 0 chr1 254562143 254562257 -27631407 - MIR SINE MIR -10 252 136 290 345 80 47 chr1 254563264 254563539 -27630125 - L3b LINE CR1 -23 1560 1277 417 315 65 54 chr1 254563818 254564094 -27629570 + L1ME1 LINE L1 20 298 -6561 2016 261 49 9 chr1 254564254 254565119 -27628545 + L1ME1 LINE L1 2599 3507 -3450 * 3100 213 62 75 chr1 254565118 254565302 -27628362 + L1ME1 LINE L1 5021 5206 -1771 2137 168 53 17 chr1 254565302 254565719 -27627945 - MSTB1 LTR MaLR 0 432 1 3100 213 62 75 chr1 254565719 254567336 -27626328 + L1ME1 LINE L1 5206 6929 -48 282 303 10 20 chr1 254567390 254567489 -27626175 - L2 LINE L2 -21 3251 3154 231 248 23 108 chr1 254567589 254567718 -27625946 - L2 LINE L2 -89 3224 3107 3847 184 39 43 chr1 254567718 254568634 -27625030 + L1MB3 LINE L1 5268 6180 -3 1814 261 94 1 chr1 254568637 254569278 -27624386 - L2 LINE L2 -187 3126 2429 1454 58 0 11 chr1 254569299 254569487 -27624177 - L1PA5 LINE L1 -2 6152 5967 1293 101 15 35 chr1 254669490 254669688 -27523976 + THE1B LTR MaLR 171 364 0 7456 92 7 7 chr1 254669689 254670678 -27522986 + THE1B-int LTR MaLR 2 990 -590 324 106 21 0 chr1 254670679 254670726 -27522938 + THE1A LTR MaLR 308 355 0 231 277 153 30 chr1 254670736 254670971 -27522693 + L1MC4a LINE L1 4815 5078 -1068 312 311 52 48 chr1 254670977 254671247 -27522417 + L1MC4a LINE L1 5118 5388 -758 2035 247 90 24 chr1 254671254 254671933 -27521731 + L1MC4a LINE L1 5523 6246 -1562 190 301 72 12 chr1 254672780 254672863 -27520801 + MIR3 SINE MIR 112 199 -9 216 97 0 0 chr1 254672888 254672919 -27520745 + (ATATG)n Simple_repeat Simple_repeat 5 35 0 238 257 0 14 chr1 254672980 254673050 -27520614 + L2 LINE L2 2921 2989 -324 1852 168 13 10 chr1 254673054 254673358 -27520306 + MER21B LTR ERV1 1 305 -558 1104 226 213 3 chr1 254673358 254673659 -27520005 + MER21B LTR ERV1 421 784 -79 332 324 69 28 chr1 254673719 254673935 -27519729 + L2 LINE L2 3008 3232 -81 300 219 194 139 chr1 254673941 254674178 -27519486 + MIR SINE MIR 3 252 -10 187 94 19 75 chr1 254675238 254675291 -27518373 + (CCCCCA)n Simple_repeat Simple_repeat 1 50 0 1155 215 8 35 chr1 254675469 254675730 -27517934 - MLT1A2 LTR MaLR -12 362 109 189 0 0 0 chr1 254675902 254675923 -27517741 + (TC)n Simple_repeat Simple_repeat 2 22 0 220 115 0 77 chr1 254677315 254677393 -27516271 + (GGGGA)n Simple_repeat Simple_repeat 2 73 0 4438 113 7 19 chr1 254678536 254679156 -27514508 - LTR9 LTR ERV1 0 612 1 315 264 93 21 chr1 254680442 254680582 -27513082 - MIR SINE MIR -68 194 45 207 0 0 0 chr1 254680588 254680611 -27513053 + (T)n Simple_repeat Simple_repeat 1 23 0 625 236 52 17 chr1 254681645 254681819 -27511845 - MIR SINE MIR -72 190 11 926 269 30 8 chr1 254682900 254683134 -27510530 - MIR SINE MIR -21 241 3 442 296 41 12 chr1 254683266 254683438 -27510226 - MIR SINE MIR -84 178 2 22 0 0 0 chr1 254685580 254685602 -27508062 + AT_rich Low_complexity Low_complexity 1 22 0 285 230 123 91 chr1 254685645 254685832 -27507832 - L1ME LINE L1 -303 5818 5626 612 316 61 16 chr1 254686204 254686451 -27507213 - MIR SINE MIR -3 259 2 198 0 0 0 chr1 254686776 254686798 -27506866 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 2407 81 0 3 chr1 254687990 254688288 -27505376 + AluSp SINE Alu 2 298 -15 344 288 30 12 chr1 254688628 254688739 -27504925 - MIR SINE MIR -83 125 14 260 264 33 0 chr1 254690174 254690265 -27503399 + L1MC4 LINE L1 6614 6707 -1335 28 0 0 0 chr1 254691872 254691900 -27501764 + AT_rich Low_complexity Low_complexity 1 28 0 722 63 0 49 chr1 254693165 254693307 -27500357 + (TTCCC)n Simple_repeat Simple_repeat 1 135 0 203 206 22 33 chr1 254693340 254693432 -27500232 + CT-rich Low_complexity Low_complexity 4 94 0 1261 289 155 17 chr1 254694716 254695297 -27498367 - MLT2F LTR ERVL 0 663 3 4100 263 58 31 chr1 254695297 254695439 -27498225 - ERVL-F LTR ERVL -6 5758 5621 1800 139 71 0 chr1 254695439 254695719 -27497945 + AluSx SINE Alu 1 300 -12 4100 263 58 31 chr1 254695719 254695834 -27497830 - ERVL-F LTR ERVL -143 5621 5511 2103 189 83 9 chr1 254695834 254696269 -27497395 + MLT1C LTR MaLR 1 467 0 4100 263 58 31 chr1 254696269 254697362 -27496302 - ERVL-F LTR ERVL -253 5511 4370 5128 271 76 55 chr1 254697363 254698099 -27495565 - ERVL-F LTR ERVL -1535 4229 3510 226 170 94 19 chr1 254698099 254698152 -27495512 - LTR45B LTR ERV1 -363 126 70 5128 271 76 55 chr1 254698152 254698941 -27494723 - ERVL-F LTR ERVL -2254 3510 2603 1051 275 9 0 chr1 254698941 254699163 -27494501 - MER58A DNA MER1_type 0 224 1 5128 271 76 55 chr1 254699163 254699482 -27494182 - ERVL-F LTR ERVL -3161 2603 2292 1405 303 50 20 chr1 254699487 254699988 -27493676 - MLT1G1 LTR MaLR -7 588 73 239 289 0 0 chr1 254700646 254700698 -27492966 + MER63 DNA MER1_type 988 1039 -22 2446 62 0 52 chr1 254701133 254701458 -27492206 - AluY SINE Alu -3 308 1 1024 107 27 0 chr1 254701477 254701627 -27492037 - BC200 scRNA scRNA -45 155 2 517 225 53 83 chr1 254702287 254702456 -27491208 + MIR SINE MIR 10 173 -89 336 303 114 23 chr1 254702548 254702723 -27490941 + L2 LINE L2 2893 3083 -189 590 241 37 25 chr1 254702741 254702903 -27490761 - MER63A DNA MER1_type 0 210 47 302 319 89 31 chr1 254702940 254703131 -27490533 + L2 LINE L2 3112 3313 0 380 212 145 70 chr1 254704391 254704551 -27489113 - MER5A DNA MER1_type -6 183 4 252 322 36 67 chr1 254705921 254706092 -27487572 - MIR SINE MIR -56 206 42 236 152 0 22 chr1 254706212 254706258 -27487406 + MIR SINE MIR 81 125 -137 838 234 68 43 chr1 254706288 254706566 -27487098 + L1MC4 LINE L1 7598 7882 -160 2032 117 28 6 chr1 254706566 254706892 -27486772 + L1MA3 LINE L1 5973 6305 0 339 253 114 25 chr1 254706950 254707108 -27486556 + L1MC4 LINE L1 7869 8040 -2 2204 124 35 73 chr1 254707671 254708180 -27485484 + MLT2A2 LTR ERVL 1 505 -49 499 299 131 59 chr1 254708226 254708547 -27485117 + L2 LINE L2 2925 3268 -4 307 331 25 18 chr1 254708783 254708933 -27484731 - MER5A DNA MER1_type -27 162 2 259 293 114 36 chr1 254708937 254709077 -27484587 - MIR3 SINE MIR -57 151 1 458 232 8 64 chr1 254709476 254709601 -27484063 - MIR3 SINE MIR -10 198 81 347 172 35 11 chr1 254710476 254710563 -27483101 - L1MA9 LINE L1 0 6312 6224 21 0 0 0 chr1 254710822 254710843 -27482821 + AT_rich Low_complexity Low_complexity 1 21 0 1749 187 33 3 chr1 254711197 254711528 -27482136 - MER2 DNA MER2_type 0 344 4 418 288 89 28 chr1 254711681 254712166 -27481498 + L1MEd LINE L1 822 1374 -4862 414 0 0 0 chr1 254712689 254712735 -27480929 + (TG)n Simple_repeat Simple_repeat 2 47 0 716 274 90 49 chr1 254712942 254714409 -27479255 + L1MDb LINE L1 1124 2648 -3758 984 213 60 4 chr1 254714420 254714668 -27478996 - Charlie1a DNA MER1_type -399 1056 795 851 196 68 137 chr1 254714668 254715142 -27478522 - MLT1E2 LTR MaLR 0 626 65 2953 217 51 39 chr1 254715200 254715785 -27477879 - Charlie1a DNA MER1_type -1960 801 203 1089 184 58 5 chr1 254715785 254716008 -27477656 + MER46A DNA MER2_type 2 236 0 2953 217 51 39 chr1 254716008 254716213 -27477451 - Charlie1a DNA MER1_type -2558 203 2 348 175 0 0 chr1 254717699 254717756 -27475908 - L2 LINE L2 -2 3270 3214 1369 169 62 15 chr1 254719228 254719501 -27474163 + L1PB4 LINE L1 5749 6034 -122 269 291 61 27 chr1 254720521 254720669 -27472995 - L1ME4a LINE L1 -187 5934 5782 417 229 114 8 chr1 254722384 254722515 -27471149 + MIR SINE MIR 53 197 -65 278 294 12 24 chr1 254722585 254722670 -27470994 - L2 LINE L2 -1 3271 3188 525 298 53 25 chr1 254724497 254724779 -27468885 + L1ME4a LINE L1 5597 5886 -235 1138 320 28 34 chr1 254725666 254726344 -27467320 + L1ME1 LINE L1 38 711 -5685 771 235 36 29 chr1 254726372 254726678 -27466986 + L1ME1 LINE L1 4911 5289 -926 2703 265 38 31 chr1 254726783 254726901 -27466763 + L1ME1 LINE L1 5323 5439 -796 1745 161 0 7 chr1 254726901 254727214 -27466450 + AluJb SINE Alu 1 311 0 2703 265 38 31 chr1 254727214 254727996 -27465668 + L1ME1 LINE L1 5439 6230 -5 213 39 0 0 chr1 254728592 254728618 -27465046 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 1690 235 65 77 chr1 254728747 254729318 -27464346 + L1MB7 LINE L1 22 585 -5957 1643 219 60 35 chr1 254729319 254729770 -27463894 - MLT1C LTR MaLR 0 467 6 5577 243 68 37 chr1 254729776 254732799 -27460865 + L1MB7 LINE L1 592 4042 -2602 270 56 0 0 chr1 254732799 254732835 -27460829 + (CA)n Simple_repeat Simple_repeat 2 37 0 5577 243 68 37 chr1 254732835 254733406 -27460258 + L1MB7 LINE L1 4042 4594 -2050 989 156 148 9 chr1 254733406 254733754 -27459910 - MSTB LTR MaLR 0 426 1 3898 225 66 21 chr1 254733755 254734690 -27458974 + L1MB7 LINE L1 4591 5482 -1200 195 42 0 0 chr1 254734690 254734714 -27458950 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3898 225 66 21 chr1 254734714 254735112 -27458552 + L1MB7 LINE L1 5482 5861 -821 1548 212 0 10 chr1 254735112 254735414 -27458250 - AluJo SINE Alu -13 299 1 3898 225 66 21 chr1 254735414 254735600 -27458064 + L1MB7 LINE L1 5861 6037 -645 2489 47 0 47 chr1 254735600 254735921 -27457743 - AluY SINE Alu -5 306 1 3898 225 66 21 chr1 254735921 254736334 -27457330 + L1MB7 LINE L1 6037 6623 -59 248 259 6 58 chr1 254736544 254736718 -27456946 + T-rich Low_complexity Low_complexity 4 168 0 852 139 47 17 chr1 254736786 254736958 -27456706 + THE1C LTR MaLR 199 375 0 312 48 0 0 chr1 254737051 254737093 -27456571 + (ATG)n Simple_repeat Simple_repeat 1 42 0 423 286 87 39 chr1 254737164 254737370 -27456294 + L2 LINE L2 3096 3311 -2 241 343 93 0 chr1 254737621 254737761 -27455903 + L2 LINE L2 2553 2705 -609 711 332 68 46 chr1 254737800 254738255 -27455409 + L2 LINE L2 2849 3313 0 1759 175 96 54 chr1 254738351 254738780 -27454884 + MER31B LTR ERV1 11 457 -9 206 159 14 43 chr1 254739058 254739150 -27454514 + (TAA)n Simple_repeat Simple_repeat 1 89 0 1969 113 17 0 chr1 254739882 254740175 -27453489 + AluSx SINE Alu 1 298 -14 225 0 0 0 chr1 254740239 254740264 -27453400 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 602 276 39 22 chr1 254740880 254741061 -27452603 - MIR SINE MIR -43 219 36 399 333 9 9 chr1 254741140 254741248 -27452416 + L2 LINE L2 3161 3268 -4 289 237 21 97 chr1 254741602 254741695 -27451969 + MIR SINE MIR 1 86 -176 285 227 15 0 chr1 254741731 254741797 -27451867 - LTR16B LTR ERVL -89 375 309 4033 182 32 38 chr1 254742170 254742693 -27450971 + L1MB7 LINE L1 5007 5532 -652 1608 193 7 13 chr1 254742693 254742994 -27450670 - AluJo SINE Alu -13 299 1 4033 182 32 38 chr1 254742994 254743187 -27450477 + L1MB7 LINE L1 5532 5725 -459 2325 51 6 48 chr1 254743187 254743500 -27450164 - AluY SINE Alu -11 300 1 4033 182 32 38 chr1 254743500 254743947 -27449717 + L1MB7 LINE L1 5725 6163 -21 374 239 222 0 chr1 254744284 254744401 -27449263 - MER5A DNA MER1_type -13 176 34 2305 163 49 12 chr1 254744469 254744880 -27448784 - MSTB LTR MaLR 0 426 1 423 286 87 39 chr1 254745464 254745670 -27447994 - L2 LINE L2 -2 3311 3096 312 48 0 0 chr1 254745741 254745783 -27447881 + (CAT)n Simple_repeat Simple_repeat 1 42 0 1605 132 23 15 chr1 254745878 254746187 -27447477 - THE1C LTR MaLR 0 375 1 347 181 0 12 chr1 254746419 254746502 -27447162 + GA-rich Low_complexity Low_complexity 1 82 0 2151 139 31 19 chr1 254748039 254748399 -27445265 - THE1B LTR MaLR 0 364 1 246 249 150 0 chr1 254748711 254748816 -27444848 - L1M4 LINE L1 -1293 4853 4735 323 280 68 48 chr1 254749036 254749243 -27444421 + L1M4 LINE L1 3815 4025 -2121 23 33 0 0 chr1 254749395 254749425 -27444239 + AT_rich Low_complexity Low_complexity 1 30 0 3268 223 55 52 chr1 254749618 254750574 -27443090 + HsTC2 DNA Tc2 1 959 -939 243 0 0 0 chr1 254750586 254750613 -27443051 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2058 118 0 26 chr1 254750695 254750999 -27442665 + AluSq SINE Alu 4 299 -14 237 65 0 0 chr1 254752076 254752107 -27441557 + (CAGA)n Simple_repeat Simple_repeat 4 34 0 28 0 0 0 chr1 254752192 254752220 -27441444 + AT_rich Low_complexity Low_complexity 1 28 0 2172 107 0 0 chr1 254752258 254752622 -27441042 + AluY SINE Alu 1 364 0 299 283 186 14 chr1 254752832 254752909 -27440755 - MIR3 SINE MIR -1 207 145 225 0 0 0 chr1 254752909 254752934 -27440730 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 299 283 186 14 chr1 254752934 254753001 -27440663 - MIR3 SINE MIR -63 145 38 208 179 26 0 chr1 254753284 254753323 -27440341 - MIR SINE MIR -113 149 110 21 36 0 0 chr1 254755626 254755654 -27438010 + AT_rich Low_complexity Low_complexity 1 28 0 289 330 99 24 chr1 254755736 254755948 -27437716 + MIR SINE MIR 23 250 -12 25 31 0 0 chr1 254756026 254756058 -27437606 + AT_rich Low_complexity Low_complexity 1 32 0 196 293 121 0 chr1 254756516 254756574 -27437090 - L2 LINE L2 -67 3246 3182 282 171 61 73 chr1 254756611 254756693 -27436971 - L1M4 LINE L1 -714 5464 5384 1839 177 0 0 chr1 254756712 254757017 -27436647 - AluJb SINE Alu -7 305 1 1139 305 118 51 chr1 254757359 254757733 -27435931 - L1M4 LINE L1 -1114 5032 4685 1912 138 0 28 chr1 254757733 254758023 -27435641 + AluJb SINE Alu 1 282 -30 1139 305 118 51 chr1 254758023 254758811 -27434853 - L1M4 LINE L1 -1461 4685 3792 248 200 36 0 chr1 254758830 254758885 -27434779 + MER103 DNA DNA 40 96 -70 1260 206 3 61 chr1 254758939 254759269 -27434395 - L1MA10 LINE L1 -7 6327 6017 188 136 167 121 chr1 254759649 254759715 -27433949 - MIR SINE MIR -120 142 74 526 306 61 31 chr1 254759997 254760226 -27433438 + MIR SINE MIR 26 261 -1 243 329 273 0 chr1 254760319 254760535 -27433129 - L3 LINE CR1 -355 1222 948 1206 202 65 60 chr1 254760877 254761229 -27432435 + MLT1A2 LTR MaLR 21 374 0 25 31 0 0 chr1 254761556 254761588 -27432076 + AT_rich Low_complexity Low_complexity 1 32 0 289 330 99 24 chr1 254761666 254761878 -27431786 - MIR SINE MIR -12 250 23 21 36 0 0 chr1 254761960 254761988 -27431676 + AT_rich Low_complexity Low_complexity 1 28 0 208 179 26 0 chr1 254764288 254764327 -27429337 + MIR SINE MIR 110 149 -113 279 290 186 14 chr1 254764610 254764677 -27428987 + MIR3 SINE MIR 38 92 -116 225 0 0 0 chr1 254764677 254764702 -27428962 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 279 290 186 14 chr1 254764702 254764779 -27428885 + MIR3 SINE MIR 92 207 -1 264 233 14 0 chr1 254764982 254765055 -27428609 + T-rich Low_complexity Low_complexity 2 75 0 2454 35 0 0 chr1 254765060 254765344 -27428320 - AluY SINE Alu -27 284 1 7402 140 10 5 chr1 254765344 254766499 -27427165 - Tigger1 DNA MER2_type -1236 1182 22 567 250 0 0 chr1 254766797 254766913 -27426751 + Tigger3(Golem) DNA MER2_type 2 117 -2912 * 4011 123 70 17 chr1 254766895 254767580 -27426084 + Tigger3(Golem) DNA MER2_type 2278 3004 -25 2317 90 12 98 chr1 254767580 254767990 -27425674 - THE1C LTR MaLR 0 375 1 4011 123 70 17 chr1 254767990 254768018 -27425646 + Tigger3(Golem) DNA MER2_type 3004 3029 0 225 266 92 46 chr1 254768088 254768197 -27425467 - L1ME3A LINE L1 -94 6076 5963 742 291 146 43 chr1 254768289 254769329 -27424335 - L1ME3A LINE L1 -241 5929 4733 1796 168 7 3 chr1 254769329 254769614 -27424050 + AluSx SINE Alu 1 286 -26 742 291 146 43 chr1 254769614 254769829 -27423835 - L1ME3A LINE L1 -1437 4733 4541 248 278 74 61 chr1 254769893 254770123 -27423541 - L1ME3A LINE L1 -2580 3566 3334 265 285 63 31 chr1 254770171 254770490 -27423174 - L1ME3A LINE L1 -2898 3248 2920 641 215 8 0 chr1 254770539 254770748 -27422916 - FLAM_C SINE Alu 0 210 1 411 258 32 32 chr1 254770765 254770986 -27422678 - L1ME3A LINE L1 -3663 2483 2263 27 29 0 0 chr1 254771087 254771121 -27422543 + AT_rich Low_complexity Low_complexity 1 34 0 1331 256 142 27 chr1 254771276 254771791 -27421873 - L1ME3A LINE L1 -46 6124 5551 1563 291 189 38 chr1 254772402 254773597 -27420067 + L2 LINE L2 1876 3239 -74 9947 116 41 6 chr1 254773731 254775372 -27418292 + L1MA2 LINE L1 1977 3675 -3890 813 117 9 0 chr1 254775381 254775492 -27418172 + AluSp/q SINE Alu 179 290 -23 22 0 0 0 chr1 254775495 254775517 -27418147 + AT_rich Low_complexity Low_complexity 1 22 0 14941 172 20 5 chr1 254775524 254777727 -27415937 + L1MA2 LINE L1 3677 5966 -1757 279 0 0 0 chr1 254777727 254777758 -27415906 + (CA)n Simple_repeat Simple_repeat 2 32 0 14941 172 20 5 chr1 254777758 254779543 -27414121 + L1MA2 LINE L1 5966 7723 0 882 99 8 22 chr1 254779557 254779809 -27413855 + AluSx SINE Alu 1 302 -10 2951 159 7 38 chr1 254780162 254780710 -27412954 + LTR26B LTR ERV1 1 531 0 848 270 49 21 chr1 254780987 254781313 -27412351 - L1ME3A LINE L1 -9 6161 5827 254 299 62 21 chr1 254781909 254782006 -27411658 + MIR SINE MIR 41 141 -67 25 0 0 0 chr1 254783115 254783140 -27410524 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr1 254783840 254783865 -27409799 + AT_rich Low_complexity Low_complexity 1 25 0 1114 306 75 6 chr1 254784056 254784741 -27408923 - MER20B DNA MER1_type 0 783 3 28 71 0 0 chr1 254784909 254784965 -27408699 + AT_rich Low_complexity Low_complexity 1 56 0 219 264 0 23 chr1 254785052 254785139 -27408525 + (TA)n Simple_repeat Simple_repeat 1 85 0 228 270 173 43 chr1 254785192 254785331 -27408333 + L1MEd LINE L1 1129 1299 -4906 2792 135 49 4 chr1 254785331 254785784 -27407880 + MER101 LTR ERV1 2 474 0 228 270 173 43 chr1 254785784 254785829 -27407835 + L1MEd LINE L1 1299 1337 -4868 324 317 60 15 chr1 254785964 254786229 -27407435 + L1MEd LINE L1 1541 1817 -4579 227 284 11 11 chr1 254786507 254786602 -27407062 + A-rich Low_complexity Low_complexity 5 99 0 360 206 0 0 chr1 254786603 254786671 -27406993 + FLAM SINE Alu 60 127 -6 27 0 0 0 chr1 254786671 254786698 -27406966 + AT_rich Low_complexity Low_complexity 1 27 0 206 0 0 65 chr1 254786764 254786779 -27406885 + (CAAAAA)n Simple_repeat Simple_repeat 1 15 -14 635 261 0 0 chr1 254786779 254786909 -27406755 + FLAM_A SINE Alu 1 130 -3 206 0 0 65 chr1 254786909 254786924 -27406740 + (CAAAAA)n Simple_repeat Simple_repeat 15 29 0 1251 297 98 35 chr1 254786992 254788485 -27405179 + L1MEd LINE L1 2322 3945 -2270 2187 153 78 5 chr1 254788485 254788884 -27404780 - MSTA LTR MaLR 0 428 1 1251 297 98 35 chr1 254788884 254789166 -27404498 + L1MEd LINE L1 3945 4208 -2007 1309 197 91 0 chr1 254789167 254789421 -27404243 + AluJo SINE Alu 1 277 -35 695 297 83 51 chr1 254789443 254790188 -27403476 + L1MEd LINE L1 4195 4963 -1252 1947 222 40 53 chr1 254790369 254790968 -27402696 + MER97b DNA MER1_type? 26 616 -437 1984 103 30 0 chr1 254793125 254793396 -27400268 - AluSx SINE Alu -31 281 3 238 260 60 27 chr1 254793446 254793596 -27400068 - L1ME4a LINE L1 -23 6098 5944 407 247 60 0 chr1 254793624 254793790 -27399874 - L1ME4a LINE L1 -4 6117 5942 666 295 69 26 chr1 254793823 254794426 -27399238 - L1ME4a LINE L1 -71 6050 5403 362 300 20 47 chr1 254794596 254794746 -27398918 - L2 LINE L2 0 3313 3168 5495 141 85 57 chr1 254795053 254795487 -27398177 - Tigger1 DNA MER2_type 0 2418 1998 2506 65 3 3 chr1 254795487 254795796 -27397868 - AluY SINE Alu -2 309 1 5495 141 85 57 chr1 254795796 254796499 -27397165 - Tigger1 DNA MER2_type -420 1998 1249 1967 138 0 7 chr1 254796500 254796790 -27396874 + AluSx SINE Alu 1 288 -24 397 231 56 50 chr1 254796968 254797128 -27396536 + MER104 DNA Tc2 1 161 -19 389 331 99 0 chr1 254797467 254797639 -27396025 + LTR16A LTR ERVL 259 447 -3 1328 320 34 44 chr1 254797641 254798369 -27395295 + HERV16 LTR ERVL 1 721 -4275 585 342 94 19 chr1 254798598 254798958 -27394706 + HERV16 LTR ERVL 2243 2629 -2367 642 336 39 4 chr1 254799022 254799254 -27394410 + HERV16 LTR ERVL 2760 2999 -1997 517 305 70 44 chr1 254799425 254799723 -27393941 + HERV16 LTR ERVL 3332 3637 -2127 741 368 31 30 chr1 254799898 254800532 -27393132 + HERV16 LTR ERVL 3879 4513 -1251 270 378 16 11 chr1 254800594 254800782 -27392882 + HERV16 LTR ERVL 4607 4795 -859 553 324 59 43 chr1 254800820 254801382 -27392282 + HERV16 LTR ERVL 4558 4977 -19 384 333 137 8 chr1 254801591 254801825 -27391839 + LTR16A LTR ERVL 180 443 -7 487 309 119 40 chr1 254802632 254803241 -27390423 + L2 LINE L2 2652 3312 -1 366 269 210 11 chr1 254803252 254803438 -27390226 - MIR SINE MIR 0 262 40 619 254 148 5 chr1 254803966 254804183 -27389481 - MIR SINE MIR -4 258 11 188 329 36 51 chr1 254804666 254804803 -27388861 - L3 LINE CR1 -632 945 811 322 208 50 60 chr1 254804827 254804953 -27388711 - L1MC4 LINE L1 0 8042 7881 335 299 0 0 chr1 254804984 254805071 -27388593 + L1MC4 LINE L1 6614 6700 -1342 388 167 71 36 chr1 254805073 254805157 -27388507 - L1MC4 LINE L1 -128 7914 7828 3804 247 78 97 chr1 254805165 254805447 -27388217 - L1MC4a LINE L1 -79 7712 7426 3397 56 0 5 chr1 254805447 254805878 -27387786 - L1PA7 LINE L1 -2 6152 5724 3804 247 78 97 chr1 254805878 254806026 -27387638 - L1MC4a LINE L1 -365 7426 7277 3377 56 18 27 chr1 254806026 254806474 -27387190 - MLT2A1 LTR ERVL 0 444 1 3804 247 78 97 chr1 254806474 254808291 -27385373 - L1MC4a LINE L1 -514 7277 5506 541 294 158 35 chr1 254808298 254808809 -27384855 - L1MC4a LINE L1 -758 5371 4798 317 106 21 0 chr1 254808819 254808866 -27384798 - THE1A LTR MaLR 0 355 308 4091 128 6 19 chr1 254808867 254809514 -27384150 - THE1-int LTR MaLR -590 990 352 232 320 0 0 chr1 254809608 254809708 -27383956 + C-rich Low_complexity Low_complexity 1 100 0 298 313 44 25 chr1 254809844 254810004 -27383660 - THE1A LTR MaLR -212 163 1 374 316 77 24 chr1 254810135 254810704 -27382960 - L1MC4a LINE L1 -1487 4642 4034 233 238 16 0 chr1 254811283 254811346 -27382318 - L1MC4a LINE L1 -4622 1507 1444 261 253 0 11 chr1 254811490 254811577 -27382087 - L1MC4a LINE L1 -4862 1257 1172 239 270 20 20 chr1 254811722 254811822 -27381842 - L1M4 LINE L1 -1354 4792 4693 * 721 232 68 83 chr1 254811810 254812293 -27381371 - L1MC4a LINE L1 -5046 1073 598 264 329 102 44 chr1 254812819 254813309 -27380355 + L2 LINE L2 2566 3083 -189 420 250 38 0 chr1 254813500 254813632 -27380032 - L1MA10 LINE L1 -8 6326 6190 * 1302 233 94 4 chr1 254813630 254814146 -27379518 - L1ME LINE L1 -422 5813 5257 659 109 27 0 chr1 254814188 254814298 -27379366 + L1PA13 LINE L1 6051 6163 0 439 204 199 31 chr1 254814770 254814966 -27378698 - MER46C DNA MER2_type -109 229 1 251 259 152 18 chr1 254815231 254815343 -27378321 - MIR SINE MIR -33 229 103 2944 215 90 62 chr1 254815444 254816417 -27377247 - L1ME LINE L1 -955 5260 4242 1035 132 0 21 chr1 254816417 254816606 -27377058 - L1MA3 LINE L1 0 6305 6121 2944 215 90 62 chr1 254816606 254816913 -27376751 - L1ME LINE L1 -1973 4242 3945 1100 241 49 97 chr1 254816911 254817172 -27376492 - L1ME LINE L1 -3264 2951 2679 * 2438 53 0 23 chr1 254817172 254817474 -27376190 + AluY SINE Alu 1 295 -16 1100 241 49 97 chr1 254817474 254817809 -27375855 - L1ME LINE L1 -3536 2679 2384 990 182 0 0 chr1 254817815 254817974 -27375690 - AluSg/x SINE Alu -17 293 135 445 236 47 24 chr1 254817984 254818238 -27375426 - L1ME LINE L1 -4009 2387 2128 * 454 136 0 136 chr1 254818227 254818359 -27375305 - L1MB3 LINE L1 -2 6181 6068 1464 257 58 23 chr1 254818380 254819073 -27374591 - L1ME LINE L1 -4251 2145 1429 1019 231 78 11 chr1 254819196 254819568 -27374096 - L1ME LINE L1 -5130 1266 870 2205 95 3 44 chr1 254819571 254819886 -27373778 - AluSg SINE Alu -8 302 1 1044 320 35 4 chr1 254819891 254820344 -27373320 - L1ME LINE L1 -5753 643 177 991 222 132 49 chr1 254820357 254820727 -27372937 + MER57A LTR ERV1 3 403 0 368 234 44 15 chr1 254820737 254820874 -27372790 - L1ME LINE L1 -6234 162 22 1770 164 21 12 chr1 254821198 254821533 -27372131 - MER1B DNA MER1_type -1 338 1 697 281 70 5 chr1 254822323 254822508 -27371156 - MIR SINE MIR -46 216 20 394 322 74 8 chr1 254822740 254822861 -27370803 + L2 LINE L2 3183 3311 -2 25 31 0 0 chr1 254823917 254823949 -27369715 + AT_rich Low_complexity Low_complexity 1 32 0 1922 158 20 0 chr1 254824637 254824929 -27368735 - AluSg SINE Alu -12 298 1 1305 210 88 31 chr1 254825108 254825527 -27368137 - L1MB8 LINE L1 -6 6172 5730 241 356 20 0 chr1 254825987 254826088 -27367576 + MIR SINE MIR 42 144 -64 363 293 49 16 chr1 254826882 254827011 -27366653 - MIR SINE MIR -67 141 13 249 346 37 9 chr1 254827122 254827247 -27366417 - MIR3 SINE MIR -45 163 41 291 336 56 0 chr1 254828103 254828228 -27365436 + L2 LINE L2 3141 3272 0 600 280 92 25 chr1 254829258 254829497 -27364167 + MIR SINE MIR 7 261 -1 328 271 30 30 chr1 254830251 254830384 -27363280 + L1ME4a LINE L1 5964 6096 -25 182 239 0 15 chr1 254830543 254830610 -27363054 + CT-rich Low_complexity Low_complexity 1 66 0 213 229 21 0 chr1 254830814 254830862 -27362802 + (TATG)n Simple_repeat Simple_repeat 4 52 0 323 171 0 26 chr1 254831630 254831706 -27361958 + L1PA16 LINE L1 6084 6157 -9 199 143 48 111 chr1 254831926 254831989 -27361675 - L2 LINE L2 -1 3271 3213 2248 98 10 0 chr1 254832377 254832712 -27360952 - AluSc SINE Alu 0 338 1 492 268 96 66 chr1 254834130 254834432 -27359232 + MER93a LTR ERV1 65 375 -27 289 226 83 48 chr1 254834537 254834621 -27359043 - MIR SINE MIR -84 178 92 370 167 56 44 chr1 254834962 254835052 -27358612 + MLT1I LTR MaLR 319 409 0 607 385 37 21 chr1 254835558 254835989 -27357675 - L3 LINE CR1 -113 1464 1027 702 345 145 11 chr1 254836045 254836520 -27357144 - L3 LINE CR1 -819 758 220 24 53 0 0 chr1 254836708 254836746 -27356918 + AT_rich Low_complexity Low_complexity 1 38 0 290 188 104 111 chr1 254837449 254837593 -27356071 + LTR16B LTR ERVL 4 146 -318 384 274 145 11 chr1 254839908 254840069 -27353595 + MER5A DNA MER1_type 4 189 0 366 318 170 9 chr1 254840369 254840592 -27353072 - MIR SINE MIR -2 260 2 273 328 49 71 chr1 254842331 254842514 -27351150 + MIR3 SINE MIR 30 208 0 26 0 0 0 chr1 254842785 254842811 -27350853 + AT_rich Low_complexity Low_complexity 1 26 0 316 183 77 39 chr1 254843486 254843590 -27350074 - MLT1H LTR MaLR -16 533 426 317 237 11 54 chr1 254843789 254843882 -27349782 - MLT1F1 LTR MaLR -381 168 80 2137 104 3 3 chr1 254844507 254844794 -27348870 - AluSc SINE Alu -11 298 12 894 193 81 0 chr1 254844896 254845093 -27348571 - MER20 DNA MER1_type -4 215 3 3260 68 30 2 chr1 254845095 254845536 -27348128 - L1PA13 LINE L1 -15 6148 5696 25 0 0 0 chr1 254845589 254845614 -27348050 + AT_rich Low_complexity Low_complexity 1 25 0 590 267 64 0 chr1 254845731 254845903 -27347761 - MIR SINE MIR -23 239 57 6160 67 6 3 chr1 254846379 254847156 -27346508 + LTR17 LTR ERV1 1 780 0 242 310 10 0 chr1 254848730 254848830 -27344834 + MLT1H LTR MaLR 51 151 -398 533 339 34 21 chr1 254849052 254849288 -27344376 + MIR SINE MIR 18 256 -6 2224 202 69 4 chr1 254849452 254849987 -27343677 - L1MD3 LINE L1 -9 7986 7417 393 192 0 0 chr1 254850020 254850093 -27343571 - MLT1F1 LTR MaLR -444 123 51 834 142 0 27 chr1 254850220 254850368 -27343296 - MSTB LTR MaLR -282 144 1 25 0 0 0 chr1 254850729 254850754 -27342910 + AT_rich Low_complexity Low_complexity 1 25 0 522 325 6 12 chr1 254850880 254851040 -27342624 - MER5B DNA MER1_type -2 176 18 1666 143 10 71 chr1 254851420 254851714 -27341950 + AluSx SINE Alu 1 276 -36 643 88 0 0 chr1 254851718 254851809 -27341855 - MSTB LTR MaLR -335 91 1 210 37 0 0 chr1 254852047 254852074 -27341590 + (CATA)n Simple_repeat Simple_repeat 2 28 0 445 225 112 36 chr1 254852285 254852341 -27341323 - L1ME1 LINE L1 -6 6160 6110 2266 68 4 0 chr1 254852341 254852650 -27341014 + AluY SINE Alu 1 310 0 445 225 112 36 chr1 254852650 254853278 -27340386 - L1ME1 LINE L1 -56 6110 5431 954 224 42 26 chr1 254853339 254853723 -27339941 + L1M4 LINE L1 4959 5348 -798 2264 125 0 0 chr1 254853780 254854084 -27339580 - AluSx SINE Alu -8 304 1 228 292 62 0 chr1 254855345 254855410 -27338254 + L2 LINE L2 3240 3308 -5 235 165 63 51 chr1 254855581 254855660 -27338004 + MLT1H LTR MaLR 460 539 -16 26 0 0 0 chr1 254856025 254856051 -27337613 + AT_rich Low_complexity Low_complexity 1 26 0 225 257 0 57 chr1 254856632 254856702 -27336962 - L2 LINE L2 0 3272 3207 32 26 0 0 chr1 254857533 254857572 -27336092 + AT_rich Low_complexity Low_complexity 1 39 0 2026 127 3 7 chr1 254857655 254857954 -27335710 + AluSc SINE Alu 1 298 -11 263 245 11 64 chr1 254858580 254858674 -27334990 + MLT1H LTR MaLR 80 168 -381 289 167 24 0 chr1 254858906 254858979 -27334685 + MLT1H LTR MaLR 479 533 -16 962 197 56 0 chr1 254859711 254859924 -27333740 - L1MB3 LINE L1 0 6183 5959 1828 153 0 7 chr1 254860072 254860359 -27333305 - AluSx SINE Alu -5 307 23 294 338 103 24 chr1 254862597 254862790 -27330874 + MIR SINE MIR 6 205 -57 1295 204 107 0 chr1 254863773 254864053 -27329611 - AluJb SINE Alu -2 310 1 294 315 135 17 chr1 254864263 254864441 -27329223 + MIR SINE MIR 8 206 -56 1427 62 0 0 chr1 254864442 254864620 -27329044 - AluY SINE Alu -3 308 131 1225 204 5 119 chr1 254865129 254865541 -27328123 - MLT1A1 LTR MaLR 0 365 1 216 300 0 17 chr1 254866031 254866091 -27327573 + MER91 DNA MER1_type 6 64 -76 259 321 67 37 chr1 254866513 254866647 -27327017 - MIR SINE MIR -78 184 47 192 40 0 0 chr1 254867531 254867556 -27326108 + (TC)n Simple_repeat Simple_repeat 1 25 0 473 299 27 5 chr1 254867711 254867898 -27325766 + MER46C DNA MER2_type 138 328 -10 216 290 130 30 chr1 254867930 254868030 -27325634 + L2 LINE L2 3163 3272 0 201 282 59 12 chr1 254868194 254868279 -27325385 - L2 LINE L2 -4 3309 3221 276 30 0 0 chr1 254869223 254869256 -27324408 + (TG)n Simple_repeat Simple_repeat 2 34 0 3705 189 19 19 chr1 254869682 254870423 -27323241 + MER21B LTR ERV1 8 748 -115 329 352 6 19 chr1 254871299 254871458 -27322206 + MIR SINE MIR 5 161 -101 663 264 185 0 chr1 254872087 254872303 -27321361 + MIR SINE MIR 6 261 -1 195 42 0 0 chr1 254873730 254873754 -27319910 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 715 335 86 33 chr1 254873780 254874083 -27319581 - L2 LINE L2 -1192 2122 1837 1746 157 8 8 chr1 254874083 254874417 -27319247 + AluSx SINE Alu 17 350 0 715 335 86 33 chr1 254874417 254874714 -27318950 - L2 LINE L2 -1477 1837 1489 2097 98 0 20 chr1 254874895 254875225 -27318439 + AluSc SINE Alu 1 309 0 252 196 18 0 chr1 254875427 254875483 -27318181 - LTR33 LTR ERVL -366 155 99 1334 249 114 42 chr1 254875992 254876466 -27317198 + MLT1F LTR MaLR 32 539 -3 276 352 83 21 chr1 254876863 254877008 -27316656 - MER5A DNA MER1_type -27 162 9 196 289 86 39 chr1 254877034 254877162 -27316502 + L2 LINE L2 3160 3293 -20 226 296 34 80 chr1 254877447 254877490 -27316174 + MIR3 SINE MIR 20 63 -145 2203 117 3 10 chr1 254877490 254877798 -27315866 - AluSc SINE Alu -3 306 1 226 296 34 80 chr1 254877798 254877813 -27315851 + MIR3 SINE MIR 63 77 -131 1068 62 0 19 chr1 254877813 254877974 -27315690 + (TTTC)n Simple_repeat Simple_repeat 2 159 0 226 296 34 80 chr1 254877974 254878090 -27315574 + MIR3 SINE MIR 77 187 -21 978 231 5 0 chr1 254878562 254878770 -27314894 - MER3 DNA MER1_type 0 209 1 26 30 0 0 chr1 254879591 254879624 -27314040 + AT_rich Low_complexity Low_complexity 1 33 0 2137 100 7 0 chr1 254880399 254880840 -27312824 - AluSp SINE Alu 0 443 1 1450 266 35 35 chr1 254881065 254881558 -27312106 + LTR40a LTR ERVL 1 493 -26 545 268 119 26 chr1 254881724 254881918 -27311746 + MER58C DNA MER1_type 4 215 0 2729 120 31 7 chr1 254882089 254882295 -27311369 + MSTA LTR MaLR 1 201 -227 180 0 0 0 chr1 254882295 254882315 -27311349 + (TC)n Simple_repeat Simple_repeat 1 20 0 2729 120 31 7 chr1 254882315 254882526 -27311138 + MSTA LTR MaLR 201 428 0 228 292 62 0 chr1 254883504 254883569 -27310095 + L2 LINE L2 3240 3308 -5 235 165 63 51 chr1 254883740 254883819 -27309845 + MLT1H1 LTR MaLR 460 539 -16 278 233 82 0 chr1 254883961 254884034 -27309630 - MIR SINE MIR -143 119 41 751 122 15 0 chr1 254884216 254884347 -27309317 + GA-rich Low_complexity Low_complexity 4 136 0 225 257 0 57 chr1 254885052 254885122 -27308542 + L2 LINE L2 3207 3272 0 224 183 37 24 chr1 254885692 254885774 -27307890 + (TAA)n Simple_repeat Simple_repeat 2 84 0 252 152 63 51 chr1 254886094 254886173 -27307491 - MLT1H1 LTR MaLR -16 539 460 207 0 0 0 chr1 254886333 254886356 -27307308 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 397 256 45 50 chr1 254886360 254886559 -27307105 - MLT1H LTR MaLR -315 234 37 1430 154 34 82 chr1 254886717 254887040 -27306624 - AluJb SINE Alu 0 311 3 1460 213 36 67 chr1 254887637 254888115 -27305549 - MLT1C LTR MaLR 0 467 5 792 278 53 50 chr1 254888231 254888283 -27305381 + L2 LINE L2 2970 3020 -293 1705 149 3 47 chr1 254888283 254888607 -27305057 + AluJb SINE Alu 1 311 0 792 278 53 50 chr1 254888607 254888895 -27304769 + L2 LINE L2 3020 3312 -1 32 26 0 0 chr1 254890725 254890764 -27302900 + AT_rich Low_complexity Low_complexity 1 39 0 2378 101 0 0 chr1 254890847 254891155 -27302509 + AluSg SINE Alu 1 308 -2 24 0 0 0 chr1 254892117 254892141 -27301523 + AT_rich Low_complexity Low_complexity 1 24 0 526 360 96 25 chr1 254892562 254893123 -27300541 - L2 LINE L2 -452 2862 2262 567 281 103 21 chr1 254894063 254894305 -27299359 + MIR SINE MIR 1 262 0 12191 203 51 9 chr1 254894787 254901503 -27292161 - L1P4 LINE L1 -504 6365 1 427 287 36 44 chr1 254901661 254902041 -27291623 - L1ME LINE L1 -563 5607 5211 2089 200 49 61 chr1 254902175 254902691 -27290973 + MLT2B3 LTR ERVL 1 511 -43 342 0 0 0 chr1 254902691 254902729 -27290935 + (CA)n Simple_repeat Simple_repeat 2 39 0 2089 200 49 61 chr1 254902729 254902767 -27290897 + MLT2B3 LTR ERVL 511 548 -6 202 139 28 0 chr1 254902768 254902804 -27290860 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2448 72 7 0 chr1 254903056 254903361 -27290303 - AluSp SINE Alu -6 307 1 294 321 54 14 chr1 254903861 254904141 -27289523 - L1ME LINE L1 -1331 4815 4525 1171 184 33 2 chr1 254904153 254904448 -27289216 - MER2 DNA MER2_type 0 345 1 1555 313 95 39 chr1 254904448 254904867 -27288797 - L1ME LINE L1 -1628 4518 4124 2048 127 27 0 chr1 254904867 254905159 -27288505 + AluSx SINE Alu 1 300 -12 1555 313 95 39 chr1 254905159 254906188 -27287476 - L1ME LINE L1 -2022 4124 2989 2043 219 44 12 chr1 254906321 254907057 -27286607 - Charlie1 DNA MER1_type -385 2376 1568 3776 170 28 3 chr1 254907059 254907809 -27285855 - L1MB8 LINE L1 -104 6074 5307 293 182 15 0 chr1 254907851 254907917 -27285747 - L1MA4 LINE L1 -73 6227 6161 484 256 8 0 chr1 254908020 254908141 -27285523 + LTR16C LTR ERVL 361 482 -9 208 364 13 0 chr1 254908196 254908273 -27285391 - MIR3 SINE MIR -48 160 83 565 100 0 0 chr1 254908886 254908966 -27284698 + MADE1 DNA Mariner 1 80 0 33 0 0 0 chr1 254910059 254910092 -27283572 + AT_rich Low_complexity Low_complexity 1 33 0 244 333 99 0 chr1 254910143 254910254 -27283410 - L2 LINE L2 -1 3271 3150 252 243 29 0 chr1 254910418 254910488 -27283176 + LTR33 LTR ERVL 354 425 -96 40 0 0 0 chr1 254910490 254910530 -27283134 + AT_rich Low_complexity Low_complexity 1 40 0 989 261 91 25 chr1 254910553 254910959 -27282705 + MLT1C LTR MaLR 35 467 0 333 219 63 110 chr1 254911208 254911509 -27282155 + HAL1 LINE L1 776 1062 -1445 * 2584 218 29 27 chr1 254911508 254912206 -27281458 + L1MC3 LINE L1 6384 7082 -703 376 273 58 36 chr1 254912741 254912880 -27280784 + MIR SINE MIR 43 184 -78 28 29 0 0 chr1 254912932 254912967 -27280697 + AT_rich Low_complexity Low_complexity 1 35 0 351 333 65 12 chr1 254912987 254913155 -27280509 - L3 LINE CR1 -12 1565 1389 453 19 0 0 chr1 254913193 254913247 -27280417 + (TA)n Simple_repeat Simple_repeat 1 54 0 387 285 56 21 chr1 254913819 254913963 -27279701 - MIR SINE MIR -48 214 66 2086 120 11 0 chr1 254914437 254914741 -27278923 + AluSp SINE Alu 1 307 0 527 274 153 40 chr1 254914777 254915051 -27278613 + L2 LINE L2 3009 3313 0 244 286 88 0 chr1 254915161 254915252 -27278412 + MIR SINE MIR 163 261 -1 337 297 64 20 chr1 254915596 254915798 -27277866 - L1M4 LINE L1 -3057 3089 2879 1812 147 0 11 chr1 254915818 254916103 -27277561 + AluJb SINE Alu 1 282 -30 28 0 0 0 chr1 254916462 254916490 -27277174 + AT_rich Low_complexity Low_complexity 1 28 0 326 223 32 85 chr1 254916640 254916828 -27276836 + MER104 DNA MER2_type 1 178 -2 186 350 25 12 chr1 254916947 254917027 -27276637 + MIR SINE MIR 161 241 -21 272 292 62 21 chr1 254917972 254918068 -27275596 - L2 LINE L2 -62 3210 3111 207 0 0 0 chr1 254918094 254918117 -27275547 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1817 134 0 72 chr1 254918592 254918933 -27274731 - AluSx SINE Alu 0 321 3 2308 166 108 37 chr1 254918966 254919335 -27274329 + MLT2B3 LTR ERVL 1 419 -135 2306 123 12 6 chr1 254919335 254919676 -27273988 + MER61A LTR ERV1 1 343 0 2308 166 108 37 chr1 254919676 254919823 -27273841 + MLT2B3 LTR ERVL 419 554 0 272 310 23 0 chr1 254920068 254920155 -27273509 - L2 LINE L2 -5 3308 3220 196 339 16 16 chr1 254920309 254920436 -27273228 - L2 LINE L2 -389 2925 2799 470 199 47 41 chr1 254920488 254920659 -27273005 - LTR37A LTR ERV1 0 426 297 311 348 77 0 chr1 254921118 254921273 -27272391 - MIR SINE MIR -50 212 46 378 0 0 0 chr1 254923390 254923432 -27270232 + (TG)n Simple_repeat Simple_repeat 1 42 0 8585 143 43 10 chr1 254924130 254924736 -27268928 + L1PBa LINE L1 1470 2054 -4808 210 37 0 0 chr1 254924736 254924763 -27268901 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 8585 143 43 10 chr1 254924763 254925907 -27267757 + L1PBa LINE L1 2054 3334 -3528 2454 95 0 0 chr1 254925907 254926212 -27267452 + AluSg SINE Alu 6 310 0 8585 143 43 10 chr1 254926212 254927042 -27266622 + L1PBa LINE L1 3334 4135 -2727 1183 288 140 23 chr1 254927199 254927944 -27265720 - L2 LINE L2 -121 3192 2378 251 53 0 26 chr1 254928715 254928753 -27264911 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1317 208 28 109 chr1 254928763 254929037 -27264627 - L1M4 LINE L1 -1207 4939 4727 687 199 0 22 chr1 254929037 254929173 -27264491 + FLAM_C SINE Alu 1 133 0 1317 208 28 109 chr1 254929173 254929431 -27264233 - L1M4 LINE L1 -1419 4727 4450 271 282 28 0 chr1 254929434 254929505 -27264159 - MER2 DNA MER2_type -3 342 270 1208 128 25 10 chr1 254929539 254929742 -27263922 - MER2 DNA MER2_type -139 206 1 519 246 58 38 chr1 254929765 254929858 -27263806 - L1M4 LINE L1 -2500 3646 3556 1275 236 56 0 chr1 254929858 254930180 -27263484 - MER58B DNA MER1_type 0 341 2 519 246 58 38 chr1 254930180 254930326 -27263338 - L1M4 LINE L1 -2590 3556 3402 22 0 0 0 chr1 254930374 254930396 -27263268 + AT_rich Low_complexity Low_complexity 1 22 0 1919 138 0 0 chr1 254930491 254930818 -27262846 - AluSx SINE Alu 0 327 1 298 331 117 26 chr1 254930866 254931020 -27262644 + MIR3 SINE MIR 20 187 -21 195 310 0 0 chr1 254931226 254931284 -27262380 + MIR3 SINE MIR 105 162 -46 261 80 0 100 chr1 254931627 254931677 -27261987 - Alu SINE Alu -12 296 252 409 256 134 63 chr1 254931988 254932042 -27261622 - L1ME4a LINE L1 -82 6039 5990 2163 107 10 0 chr1 254932042 254932333 -27261331 + AluSc SINE Alu 1 294 -15 409 256 134 63 chr1 254932333 254932501 -27261163 - L1ME4a LINE L1 -131 5990 5801 220 380 53 35 chr1 254933083 254933254 -27260410 + L2 LINE L2 2715 2888 -426 180 256 49 73 chr1 254933284 254933366 -27260298 - MIR SINE MIR -58 204 125 2107 173 107 4 chr1 254933432 254933929 -27259735 - L1MB3 LINE L1 -2 6181 5634 228 227 0 0 chr1 254934094 254934138 -27259526 + L2 LINE L2 3252 3295 -18 22 0 0 0 chr1 254935551 254935573 -27258091 + AT_rich Low_complexity Low_complexity 1 22 0 1745 237 113 55 chr1 254935989 254936613 -27257051 - L1ME1 LINE L1 -26 6140 5467 2073 90 13 30 chr1 254936613 254936912 -27256752 - AluSx SINE Alu -18 294 1 1745 237 113 55 chr1 254936912 254937012 -27256652 - L1ME1 LINE L1 -699 5467 5374 1508 171 38 0 chr1 254937016 254937280 -27256384 + Tigger7 DNA MER2_type 1 274 -2213 813 119 54 0 chr1 254937276 254937494 -27256170 + Tigger7 DNA MER2_type 2270 2483 -8 * 1155 196 46 6 chr1 254937517 254937843 -27255821 - L1ME1 LINE L1 -786 5360 5022 661 287 39 18 chr1 254938000 254938331 -27255333 + MER46C DNA MER2_type 1 338 0 1623 283 99 29 chr1 254940530 254941231 -27252433 - L2 LINE L2 -946 2368 1536 670 291 8 46 chr1 254942604 254942845 -27250819 - MIR SINE MIR -6 256 25 208 167 19 37 chr1 254942964 254943018 -27250646 + A-rich Low_complexity Low_complexity 2 54 0 2855 217 36 11 chr1 254943525 254944268 -27249396 + L1ME1 LINE L1 5372 6133 -33 366 60 0 0 chr1 254944284 254944334 -27249330 + MADE1 DNA Mariner 2 51 -29 360 111 0 0 chr1 254947627 254947681 -27245983 + (CA)n Simple_repeat Simple_repeat 2 55 0 2380 70 0 52 chr1 254949353 254949681 -27243983 + AluY SINE Alu 1 311 0 691 40 10 10 chr1 254950796 254950896 -27242768 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 4588 167 40 37 chr1 254951135 254951402 -27242262 + L1MA4 LINE L1 4775 5040 -1260 2157 102 10 10 chr1 254951402 254951705 -27241959 + AluSx SINE Alu 1 303 -9 4588 167 40 37 chr1 254951705 254951717 -27241947 + L1MA4 LINE L1 5040 5050 -1250 1559 138 12 4 chr1 254951717 254951963 -27241701 + AluSq SINE Alu 30 277 -36 4588 167 40 37 chr1 254951963 254953092 -27240572 + L1MA4 LINE L1 5050 6178 -122 1747 158 39 3 chr1 254953192 254953527 -27240137 + THE1B LTR MaLR 18 364 0 294 312 0 13 chr1 254953585 254953662 -27240002 - L2 LINE L2 -556 2758 2683 1866 162 36 0 chr1 254953664 254954052 -27239612 + Tigger2 DNA MER2_type 1 402 -2316 2114 115 6 3 chr1 254954060 254954390 -27239274 + Tigger2 DNA MER2_type 2309 2639 -79 1170 179 0 10 chr1 254954391 254954587 -27239077 - AluJb SINE Alu -103 209 16 546 172 0 0 chr1 254954589 254954676 -27238988 + Tigger2 DNA MER2_type 2621 2707 -11 402 174 47 58 chr1 254954722 254954808 -27238856 + L2 LINE L2 3186 3270 -2 2147 128 24 21 chr1 254954824 254955198 -27238466 + THE1C LTR MaLR 1 375 0 933 247 95 8 chr1 254955334 254955597 -27238067 + MLT1J1 LTR MaLR 7 292 -154 285 299 26 0 chr1 254955757 254955834 -27237830 - MER20B DNA MER1_type -607 176 98 496 312 49 17 chr1 254955948 254956198 -27237466 + MIR SINE MIR 7 261 -1 1735 171 6 44 chr1 254956366 254956681 -27236983 + AluJb SINE Alu 1 303 -9 182 255 59 20 chr1 254957353 254957404 -27236260 + L2 LINE L2 3250 3302 -11 208 272 49 37 chr1 254958871 254958952 -27234712 - L2 LINE L2 -1 3312 3231 2019 92 0 0 chr1 254958961 254959212 -27234452 + AluSg SINE Alu 40 290 -20 730 299 24 5 chr1 254959575 254959782 -27233882 - MIR SINE MIR -24 238 28 274 333 57 25 chr1 254959924 254960083 -27233581 + L3 LINE CR1 1263 1426 -151 423 0 0 0 chr1 254960088 254960135 -27233529 + (TCTA)n Simple_repeat Simple_repeat 3 49 0 470 228 18 26 chr1 254960145 254960259 -27233405 - MLT2C1 LTR ERVL -62 335 223 1932 82 7 43 chr1 254960442 254960723 -27232941 - AluSq SINE Alu -1 312 42 22 35 0 0 chr1 254961375 254961404 -27232260 + AT_rich Low_complexity Low_complexity 1 29 0 239 245 0 0 chr1 254962347 254962400 -27231264 + MER74B LTR ERVL 1 53 -569 1087 264 78 10 chr1 254962477 254962860 -27230804 + MER74B LTR ERVL 204 612 -10 1402 123 64 0 chr1 254963627 254963863 -27229801 - L1PA13 LINE L1 -3 6160 5910 425 173 164 10 chr1 254964104 254964208 -27229456 + MIR SINE MIR 35 154 -108 2340 167 16 23 chr1 254964264 254964701 -27228963 - Tigger2a DNA MER2_type 0 434 1 313 276 88 59 chr1 254964824 254964994 -27228670 + MIR SINE MIR 53 227 -35 * 555 229 34 39 chr1 254964986 254965165 -27228499 + MIR SINE MIR 82 259 -3 2276 183 26 2 chr1 254965844 254966259 -27227405 + MSTB LTR MaLR 1 425 -1 180 319 8 76 chr1 254966417 254966536 -27227128 + L2 LINE L2 2596 2706 -608 245 317 77 59 chr1 254966617 254966838 -27226826 + L2 LINE L2 2867 3091 -181 21 57 0 0 chr1 254966864 254966899 -27226765 + AT_rich Low_complexity Low_complexity 1 35 0 535 237 46 36 chr1 254966906 254967100 -27226564 - L2 LINE L2 -5 3308 3113 1128 214 267 5 chr1 254967153 254967565 -27226099 + MLT2B1 LTR ERVL 1 520 0 206 347 65 8 chr1 254967688 254967812 -27225852 - L2 LINE L2 -417 2897 2767 22 35 0 0 chr1 254968819 254968848 -27224816 + AT_rich Low_complexity Low_complexity 1 29 0 259 262 186 0 chr1 254969009 254969154 -27224510 - MLT1H LTR MaLR -100 449 278 288 378 23 12 chr1 254969498 254969670 -27223994 - MIR SINE MIR -75 187 14 245 403 0 0 chr1 254969686 254969805 -27223859 - L3 LINE CR1 -227 1350 1232 568 364 103 13 chr1 254970113 254970588 -27223076 + L3 LINE CR1 1048 1565 -12 321 292 62 50 chr1 254970668 254970829 -27222835 - MIR SINE MIR -54 208 46 2575 42 6 16 chr1 254971460 254971772 -27221892 - AluY SINE Alu -1 310 2 26 30 0 0 chr1 254972308 254972341 -27221323 + AT_rich Low_complexity Low_complexity 1 33 0 181 358 28 28 chr1 254973268 254973377 -27220287 - L2 LINE L2 -424 2890 2782 368 274 107 6 chr1 254973450 254973618 -27220046 - MLT1K LTR MaLR -2 586 402 1226 271 56 106 chr1 254973687 254974825 -27218839 + L1M3d LINE L1 1 1081 -4810 3319 153 29 29 chr1 254974837 254975699 -27217965 + MER49 LTR ERV1 1 923 0 625 166 51 25 chr1 254975701 254975858 -27217806 + L1M3d LINE L1 1094 1254 -4637 254 49 0 24 chr1 254976038 254976079 -27217585 + (TA)n Simple_repeat Simple_repeat 2 41 0 3791 257 40 16 chr1 254976095 254977977 -27215687 + L1M4 LINE L1 1517 3353 -3291 2209 81 20 10 chr1 254977977 254978273 -27215391 + AluY SINE Alu 1 299 -12 3791 257 40 16 chr1 254978273 254978631 -27215033 + L1M4 LINE L1 3353 3701 -2943 2467 117 28 19 chr1 254978631 254978990 -27214674 + THE1B LTR MaLR 1 362 -2 11388 97 13 3 chr1 254978992 254980556 -27213108 + THE1B-int LTR MaLR 1 1580 0 2359 114 39 25 chr1 254980556 254980915 -27212749 + THE1B LTR MaLR 1 364 0 3791 257 40 16 chr1 254980915 254981019 -27212645 + L1M4 LINE L1 3700 4022 -2622 444 278 5 16 chr1 254981023 254981217 -27212447 - L1M4 LINE L1 -1462 4684 4493 575 274 154 38 chr1 254981489 254982592 -27211072 - L1M4 LINE L1 -2013 4133 2903 3113 193 59 24 chr1 254982639 254983473 -27210191 - L1MC3 LINE L1 -1 7784 6922 2442 75 0 0 chr1 254983498 254983793 -27209871 - AluY SINE Alu -16 295 1 629 321 62 53 chr1 254983801 254984052 -27209612 - L1M4 LINE L1 -3289 2857 2610 580 131 28 0 chr1 254984052 254984159 -27209505 - L1MA3 LINE L1 -3 6302 6193 629 321 62 53 chr1 254984159 254984379 -27209285 - L1M4 LINE L1 -3536 2610 2393 2164 102 4 0 chr1 254984379 254984654 -27209010 - AluSg SINE Alu -19 291 16 629 321 62 53 chr1 254984654 254984892 -27208772 - L1M4 LINE L1 -3753 2393 2141 24 53 0 0 chr1 254985195 254985233 -27208431 + AT_rich Low_complexity Low_complexity 1 38 0 429 309 26 30 chr1 254987613 254987882 -27205782 - L1MC/D LINE L1 -579 5583 5316 254 143 43 43 chr1 254988001 254988071 -27205593 + (TTTAA)n Simple_repeat Simple_repeat 1 70 0 2208 130 13 0 chr1 254988100 254988407 -27205257 - AluSx SINE Alu -1 311 1 264 255 38 25 chr1 254988474 254988631 -27205033 + L1MC5 LINE L1 5623 5781 -2027 1557 233 0 16 chr1 254988814 254989123 -27204541 - AluJo SINE Alu -8 304 1 581 181 138 100 chr1 254989585 254989795 -27203869 - MER20 DNA MER1_type 0 219 2 714 327 99 55 chr1 254990747 254991529 -27202135 - L2 LINE L2 0 3272 2461 352 266 11 11 chr1 254991595 254991689 -27201975 - MIR SINE MIR -140 122 29 1253 117 0 0 chr1 254991751 254991914 -27201750 - AluSp SINE Alu -16 297 135 360 0 0 0 chr1 254992487 254992527 -27201137 + (CA)n Simple_repeat Simple_repeat 2 41 0 731 228 90 67 chr1 254992563 254992997 -27200667 + L1MC5 LINE L1 7087 7530 -431 2106 83 0 0 chr1 254993233 254993521 -27200143 + L1PA10 LINE L1 5578 5865 -303 235 231 19 0 chr1 254995359 254995411 -27198253 + CT-rich Low_complexity Low_complexity 3 55 0 2322 101 3 0 chr1 254995785 254996082 -27197582 - AluSp SINE Alu -15 298 1 629 262 99 9 chr1 254996137 254996370 -27197294 + MER46C DNA MER2_type 85 338 0 193 311 176 0 chr1 254996951 254997025 -27196639 - MIR SINE MIR -168 94 8 1909 251 39 52 chr1 254998956 254999650 -27194014 + L1MEc LINE L1 36 720 -5676 1001 214 56 44 chr1 254999652 254999724 -27193940 + L1MEc LINE L1 2811 2881 -3334 2209 99 3 0 chr1 254999724 255000016 -27193648 + AluSx SINE Alu 1 293 -19 1001 214 56 44 chr1 255000016 255000355 -27193309 + L1MEc LINE L1 2881 3227 -2988 431 313 121 0 chr1 255001108 255001274 -27192390 - MIR SINE MIR -73 189 4 1594 145 32 69 chr1 255001412 255001917 -27191747 - L1M3 LINE L1 -573 5607 5127 20097 157 21 21 chr1 255001932 255009631 -27184033 - L1MA1 LINE L1 -6 7715 15 341 109 16 0 chr1 255009878 255009942 -27183722 + (TC)n Simple_repeat Simple_repeat 1 65 0 327 212 202 0 chr1 255010310 255010409 -27183255 - MLT1G LTR MaLR -49 541 423 241 187 107 13 chr1 255010478 255010553 -27183111 - MLT1G LTR MaLR -275 320 239 2178 133 0 0 chr1 255012778 255013079 -27180585 + AluY SINE Alu 1 301 -10 3895 113 37 40 chr1 255013715 255014370 -27179294 + MER39B LTR ERV1 1 653 0 353 289 101 34 chr1 255015273 255015422 -27178242 - L2 LINE L2 0 3313 3155 28 0 0 0 chr1 255015422 255015450 -27178214 + AT_rich Low_complexity Low_complexity 1 28 0 863 263 51 4 chr1 255015469 255015705 -27177959 - MIR SINE MIR 0 262 16 463 310 69 31 chr1 255016317 255016578 -27177086 - L1ME4a LINE L1 -240 5881 5611 41035 50 2 1 chr1 255016594 255022728 -27170936 + L1PA5 LINE L1 11 6150 -4 201 162 0 0 chr1 255022737 255022774 -27170890 + A-rich Low_complexity Low_complexity 1 37 0 753 286 40 12 chr1 255025426 255025678 -27167986 + MIR SINE MIR 4 262 0 183 374 17 17 chr1 255025764 255025879 -27167785 - L3b LINE CR1 -349 1234 1120 185 263 79 26 chr1 255026004 255026080 -27167584 + MIR SINE MIR 104 183 -79 22 35 0 0 chr1 255026181 255026210 -27167454 + AT_rich Low_complexity Low_complexity 1 29 0 1362 192 29 53 chr1 255026899 255027316 -27166348 + LTR37A LTR ERV1 19 425 -1 23 33 0 0 chr1 255027819 255027849 -27165815 + AT_rich Low_complexity Low_complexity 1 30 0 467 345 7 7 chr1 255027849 255027988 -27165676 + L2 LINE L2 3134 3272 0 209 259 37 19 chr1 255131577 255131631 -27062033 + MIR SINE MIR 196 250 -12 326 391 56 6 chr1 255132383 255132544 -27061120 - MIR3 SINE MIR -24 184 16 285 151 0 0 chr1 255132548 255132601 -27061063 + (TA)n Simple_repeat Simple_repeat 1 53 0 297 299 0 13 chr1 255133262 255133339 -27060325 + GA-rich Low_complexity Low_complexity 1 76 0 267 239 51 43 chr1 255135126 255135243 -27058421 + LTR16B LTR ERVL 335 452 -12 194 291 163 12 chr1 255135447 255135619 -27058045 - L2 LINE L2 -214 3058 2861 492 234 7 28 chr1 255135855 255136000 -27057664 - MER3 DNA MER1_type -21 188 47 195 245 31 112 chr1 255136019 255136117 -27057547 - MIR SINE MIR -74 134 45 181 316 38 38 chr1 255136247 255136326 -27057338 + MIR SINE MIR 21 99 -163 289 274 144 75 chr1 255136408 255136733 -27056931 - L1MC/D LINE L1 -469 5652 5476 316 254 164 84 chr1 255137746 255138033 -27055631 + MLT1J2 LTR MaLR 73 382 -68 244 245 57 0 chr1 255138026 255138079 -27055585 + MLT1I LTR MaLR 347 402 -7 * 6376 178 43 22 chr1 255139469 255140309 -27053355 + L1P4 LINE L1 3956 4777 -1389 2128 138 0 0 chr1 255140309 255140620 -27053044 + AluSx SINE Alu 1 311 -1 6376 178 43 22 chr1 255140620 255141556 -27052108 + L1P4 LINE L1 4777 5745 -421 242 73 24 0 chr1 255141687 255141728 -27051936 + (TA)n Simple_repeat Simple_repeat 1 42 0 2168 107 3 7 chr1 255141732 255142032 -27051632 - AluSp SINE Alu -14 299 1 210 297 147 44 chr1 255142116 255142153 -27051511 - L2 LINE L2 -1057 2257 2225 279 0 0 0 chr1 255142153 255142184 -27051480 + (CA)n Simple_repeat Simple_repeat 1 31 0 210 297 147 44 chr1 255142184 255142419 -27051245 - L2 LINE L2 -1089 2225 1957 554 237 42 0 chr1 255142422 255142540 -27051124 - L2 LINE L2 -2 3311 3189 268 306 51 46 chr1 255142529 255142725 -27050939 - L2 LINE L2 -1329 1985 1789 * 3117 180 13 2 chr1 255142864 255143413 -27050251 - MER6A DNA MER2_type 0 605 51 581 271 34 14 chr1 255143523 255143730 -27049934 - MIR SINE MIR -38 224 14 855 109 17 0 chr1 255143856 255143975 -27049689 - AluSg/x SINE Alu -11 299 179 13429 79 16 52 chr1 255144078 255146130 -27047534 - HERVH LTR ERV1 -5735 1978 1 3563 65 7 9 chr1 255146132 255146581 -27047083 - LTR7 LTR ERV1 -2 448 1 240 35 0 0 chr1 255146720 255146749 -27046915 + (TG)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr1 255147151 255147173 -27046491 + AT_rich Low_complexity Low_complexity 1 22 0 383 297 43 9 chr1 255147439 255147711 -27045953 + L1P LINE L1 4878 5163 -983 21 36 0 0 chr1 255147738 255147766 -27045898 + AT_rich Low_complexity Low_complexity 1 28 0 542 326 173 12 chr1 255147847 255148350 -27045314 - L2 LINE L2 -4 3309 2721 1671 202 7 3 chr1 255149438 255149735 -27043929 + AluJo SINE Alu 1 298 -14 202 311 0 0 chr1 255150227 255150272 -27043392 - L2 LINE L2 -1 3271 3227 351 239 0 18 chr1 255150737 255150850 -27042814 + (CA)n Simple_repeat Simple_repeat 1 111 0 4866 163 17 0 chr1 255151372 255152146 -27041518 + L1M1 LINE L1 11 797 -6768 1140 224 51 19 chr1 255152247 255152559 -27041105 + L1ME1 LINE L1 5831 6152 -14 225 159 0 0 chr1 255152575 255152619 -27041045 + (CATA)n Simple_repeat Simple_repeat 4 47 0 307 217 68 25 chr1 255153323 255153484 -27040180 + L1MC4a LINE L1 3008 3175 -2971 422 278 77 24 chr1 255153785 255154033 -27039631 + L1MC4a LINE L1 3724 3984 -2162 312 158 0 0 chr1 255154061 255154118 -27039546 + (TG)n Simple_repeat Simple_repeat 2 58 0 464 296 55 25 chr1 255154220 255154560 -27039104 + L1MC4a LINE L1 4132 4490 -1656 982 270 58 55 chr1 255154683 255155116 -27038548 + L1MC4a LINE L1 5495 5928 -1880 30 45 0 0 chr1 255155337 255155381 -27038283 + AT_rich Low_complexity Low_complexity 1 44 0 337 162 81 0 chr1 255155499 255155573 -27038091 - MIR SINE MIR -106 156 77 274 253 46 11 chr1 255155688 255155775 -27037889 + MIR SINE MIR 47 136 -126 2201 82 14 0 chr1 255156542 255156843 -27036821 + AluSp SINE Alu 1 305 0 1440 216 7 3 chr1 255156853 255157149 -27036515 + AluJb SINE Alu 1 297 -15 269 235 189 20 chr1 255157563 255157716 -27035948 - MIR SINE MIR -70 192 14 313 219 16 0 chr1 255158318 255158382 -27035282 - L2 LINE L2 0 3313 3249 6669 192 77 7 chr1 255158382 255159769 -27033895 - MER52A LTR ERV1 0 1755 368 252 257 14 0 chr1 255159952 255160022 -27033642 - MER52A LTR ERV1 -1684 71 1 349 220 0 66 chr1 255160022 255160113 -27033551 - L2 LINE L2 -61 3252 3168 460 246 144 34 chr1 255161154 255161390 -27032274 + L3 LINE CR1 1097 1358 -219 727 289 32 24 chr1 255161423 255161676 -27031988 + MIR SINE MIR 7 261 -1 295 321 49 0 chr1 255161676 255161757 -27031907 - L2 LINE L2 -18 3254 3170 277 399 16 11 chr1 255161794 255161977 -27031687 + L3 LINE CR1 1392 1575 -2 564 320 32 24 chr1 255163031 255163284 -27030380 - MIR SINE MIR 0 262 8 21 36 0 0 chr1 255163716 255163744 -27029920 + AT_rich Low_complexity Low_complexity 1 28 0 201 74 0 0 chr1 255164734 255164761 -27028903 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 700 240 198 42 chr1 255165464 255165747 -27027917 + MER68 LTR ERV1 236 562 0 1605 201 170 33 chr1 255166651 255166687 -27026977 - MLT2B2 LTR ERVL 0 515 485 375 23 0 0 chr1 255166687 255166731 -27026933 + (CA)n Simple_repeat Simple_repeat 2 45 0 1605 201 170 33 chr1 255166731 255167147 -27026517 - MLT2B2 LTR ERVL -30 485 1 291 289 81 89 chr1 255167628 255167863 -27025801 - L2 LINE L2 -205 3067 2835 183 298 117 29 chr1 255170446 255170617 -27023047 + L2 LINE L2 2857 3042 -230 3048 159 27 6 chr1 255170746 255171269 -27022395 + L1MB3 LINE L1 5648 6181 -2 279 319 124 9 chr1 255171315 255171428 -27022236 + L2 LINE L2 3179 3304 -9 31 68 0 0 chr1 255172253 255172312 -27021352 + AT_rich Low_complexity Low_complexity 1 59 0 542 344 52 5 chr1 255173161 255173373 -27020291 + MIR SINE MIR 4 225 -37 360 0 0 0 chr1 255173836 255173876 -27019788 + (TG)n Simple_repeat Simple_repeat 1 40 0 451 279 81 23 chr1 255174275 255174447 -27019217 + L2 LINE L2 3132 3313 0 288 240 107 13 chr1 255174509 255174584 -27019080 - MIR3 SINE MIR -36 172 91 408 20 0 0 chr1 255174966 255175015 -27018649 + (CA)n Simple_repeat Simple_repeat 2 50 0 301 212 15 0 chr1 255175033 255175099 -27018565 + L2 LINE L2 3166 3232 -81 317 358 34 17 chr1 255175469 255175645 -27018019 + MIR SINE MIR 14 192 -70 218 270 14 0 chr1 255176070 255176144 -27017520 + MER5C DNA MER1_type 43 117 -207 289 154 0 0 chr1 255176252 255176317 -27017347 - Charlie5 DNA MER1_type -71 2541 2477 2287 152 39 32 chr1 255176317 255176864 -27016800 + MLT2A2 LTR ERVL 1 554 0 680 174 79 23 chr1 255176864 255176900 -27016764 - MER33 DNA MER1_type -93 69 36 1984 145 3 3 chr1 255176900 255177203 -27016461 + AluSg SINE Alu 1 303 -7 324 0 0 0 chr1 255177203 255177239 -27016425 + (TA)n Simple_repeat Simple_repeat 2 37 0 680 174 79 23 chr1 255177239 255177378 -27016286 - MER33 DNA MER1_type -125 37 1 299 34 71 17 chr1 255178439 255178495 -27015169 + MADE1 DNA Mariner 1 47 -33 219 198 12 25 chr1 255179171 255179252 -27014412 + (ATG)n Simple_repeat Simple_repeat 2 81 0 5381 133 36 21 chr1 255179717 255180381 -27013283 - L1PA15 LINE L1 0 6165 5512 240 35 0 0 chr1 255180381 255180410 -27013254 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1576 183 7 11 chr1 255180412 255180696 -27012968 - AluJb SINE Alu -29 283 1 5381 133 36 21 chr1 255180696 255180984 -27012680 - L1PA15 LINE L1 -653 5512 5200 363 257 79 0 chr1 255181482 255181583 -27012081 + MIR SINE MIR 83 191 -71 1711 181 0 0 chr1 255181732 255182013 -27011651 - AluJb SINE Alu -6 306 26 2304 107 11 10 chr1 255182668 255183329 -27010335 + AluSg SINE Alu 3 308 -2 190 352 23 39 chr1 255183939 255184067 -27009597 + MIR3 SINE MIR 35 160 -48 25 0 0 0 chr1 255184250 255184275 -27009389 + AT_rich Low_complexity Low_complexity 1 25 0 239 94 0 0 chr1 255185178 255185210 -27008454 - MLT1E3 LTR MaLR -3 621 590 1643 90 20 8 chr1 255185339 255185584 -27008080 + LTR7 LTR ERV1 201 448 -2 20259 88 12 40 chr1 255185586 255188661 -27005003 + HERVH LTR ERV1 1 2987 -4726 813 182 20 0 chr1 255188655 255188803 -27004861 + HERVH LTR ERV1 3140 3290 -4423 * 3327 109 6 8 chr1 255188802 255189297 -27004367 + HERVH LTR ERV1 3500 3993 -3720 4294 156 1 1 chr1 255189299 255189961 -27003703 + HERVH LTR ERV1 4488 5149 -2564 1367 121 18 36 chr1 255189962 255190186 -27003478 + HERVH LTR ERV1 5600 5819 -1894 2574 72 45 13 chr1 255190188 255190564 -27003100 + HERVH LTR ERV1 7326 7713 0 3621 64 0 7 chr1 255190564 255191015 -27002649 + LTR7 LTR ERV1 1 448 -2 256 148 37 19 chr1 255191018 255191072 -27002592 - MER104 DNA Tc2 -52 128 74 4832 133 48 5 chr1 255191361 255192108 -27001556 - MER4E LTR ERV1 0 779 1 2636 102 59 39 chr1 255192461 255192900 -27000764 - LTR7 LTR ERV1 -2 448 1 2574 77 48 13 chr1 255192900 255193279 -27000385 - HERVH LTR ERV1 0 7713 7322 1352 124 23 9 chr1 255193277 255193494 -27000170 - HERVH LTR ERV1 -1894 5819 5600 * 2834 150 2 4 chr1 255193495 255194113 -26999551 - HERVH LTR ERV1 -2564 5149 4488 3465 107 4 6 chr1 255194115 255194618 -26999046 - HERVH LTR ERV1 -3720 3993 3492 862 149 20 0 chr1 255194608 255194756 -26998908 - HERVH LTR ERV1 -4423 3290 3140 * 20632 94 13 13 chr1 255194750 255197736 -26995928 - HERVH LTR ERV1 -4726 2987 1 3515 69 7 9 chr1 255197738 255198187 -26995477 - LTR7 LTR ERV1 -2 448 1 240 35 0 0 chr1 255198326 255198355 -26995309 + (TG)n Simple_repeat Simple_repeat 1 29 0 377 329 29 7 chr1 255198956 255199093 -26994571 + MIR SINE MIR 49 188 -74 3110 142 8 31 chr1 255199247 255199297 -26994367 - L1MB2 LINE L1 -1 6170 6120 2383 93 0 3 chr1 255199297 255199598 -26994066 - AluSc SINE Alu -9 300 1 3110 142 8 31 chr1 255199598 255200062 -26993602 - L1MB2 LINE L1 -51 6120 5668 965 188 200 0 chr1 255200063 255200172 -26993492 + AluJo SINE Alu 6 92 -220 180 0 0 0 chr1 255200172 255200192 -26993472 + (TAA)n Simple_repeat Simple_repeat 2 21 0 965 188 200 0 chr1 255200192 255200327 -26993337 + AluJo SINE Alu 92 299 -13 1671 168 9 64 chr1 255200330 255200675 -26992989 - L1MB2 LINE L1 -501 5682 5357 197 361 39 13 chr1 255200891 255201046 -26992618 + L2 LINE L2 2551 2709 -605 396 0 0 0 chr1 255201327 255201371 -26992293 + (TA)n Simple_repeat Simple_repeat 2 45 0 244 156 14 0 chr1 255201769 255201813 -26991851 - L1M3 LINE L1 -453 5718 5672 989 188 196 0 chr1 255201813 255201927 -26991737 + AluJo SINE Alu 1 91 -221 180 0 0 0 chr1 255201927 255201947 -26991717 + (TAA)n Simple_repeat Simple_repeat 2 21 0 989 188 196 0 chr1 255201947 255202082 -26991582 + AluJo SINE Alu 91 299 -13 541 125 16 9 chr1 255202085 255202197 -26991467 - L1M3 LINE L1 -489 5682 5569 222 306 79 33 chr1 255202664 255202787 -26990877 + MER5B DNA MER1_type 51 178 0 194 278 86 80 chr1 255203502 255203653 -26990011 - MIR SINE MIR -83 179 28 3697 143 14 30 chr1 255203848 255204415 -26989249 - L1MB1 LINE L1 -1 6167 5609 781 197 0 15 chr1 255204415 255204547 -26989117 - FLAM_C SINE Alu -2 131 2 3697 143 14 30 chr1 255204547 255204601 -26989063 - L1MB1 LINE L1 -559 5609 5556 422 159 15 0 chr1 255204639 255204717 -26988947 - L1MB1 LINE L1 -588 5582 5504 197 125 31 0 chr1 255205034 255205066 -26988598 - L2 LINE L2 -38 3234 3202 1367 278 58 35 chr1 255206269 255206805 -26986859 + MLT1H LTR MaLR 2 549 0 342 0 0 0 chr1 255206906 255206944 -26986720 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 31 0 0 chr1 255206945 255206977 -26986687 + (TTG)n Simple_repeat Simple_repeat 2 33 0 231 270 11 34 chr1 255207880 255207969 -26985695 - MIR SINE MIR -71 191 105 772 243 6 33 chr1 255208763 255208944 -26984720 - MER20 DNA MER1_type -1 218 43 386 308 9 0 chr1 255209558 255209665 -26983999 + MIR SINE MIR 48 155 -107 464 258 55 44 chr1 255209734 255209916 -26983748 - MIR SINE MIR -71 191 8 2281 114 0 0 chr1 255210864 255211205 -26982459 - AluSx SINE Alu 0 341 1 409 91 0 0 chr1 255211380 255211435 -26982229 + L1P5 LINE L1 5708 5762 -394 687 149 159 74 chr1 255211450 255211726 -26981938 - MER4C LTR ERV1 -9 456 153 532 128 88 88 chr1 255211735 255211860 -26981804 - MER4A LTR ERV1 -322 342 218 387 0 0 0 chr1 255212699 255212742 -26980922 + (TG)n Simple_repeat Simple_repeat 1 43 0 213 267 138 35 chr1 255213303 255213419 -26980245 - L2 LINE L2 -189 3083 2956 1182 276 69 38 chr1 255213419 255213840 -26979824 - LTR41 LTR ERVL -339 434 1 23 0 0 0 chr1 255214071 255214094 -26979570 + AT_rich Low_complexity Low_complexity 1 23 0 8556 129 8 42 chr1 255214150 255215494 -26978170 + HSMAR2 DNA Mariner 2 1300 -2 1195 281 43 47 chr1 255215593 255216124 -26977540 - ERVL LTR ERVL -416 5348 4820 660 164 150 17 chr1 255216256 255216510 -26977154 - L1M LINE L1 -738 5426 5154 1827 278 12 0 chr1 255216514 255217000 -26976664 - L2 LINE L2 -963 2351 1860 190 359 109 29 chr1 255217060 255217336 -26976328 - L2 LINE L2 -2365 949 652 216 167 0 0 chr1 255217673 255217709 -26975955 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 315 56 43 chr1 255218127 255218289 -26975375 + MIR SINE MIR 28 191 -71 453 324 64 34 chr1 255218467 255218711 -26974953 + MIR SINE MIR 12 257 -5 201 74 0 0 chr1 255218972 255218999 -26974665 + (CA)n Simple_repeat Simple_repeat 1 27 0 856 232 22 0 chr1 255220145 255220330 -26973334 - MER5A DNA MER1_type 0 189 1 253 353 15 44 chr1 255220339 255220475 -26973189 + MIR SINE MIR 21 152 -110 183 363 16 24 chr1 255220907 255221031 -26972633 + MIR SINE MIR 24 146 -62 194 340 117 11 chr1 255221645 255221739 -26971925 - L2 LINE L2 -31 3241 3138 318 339 27 48 chr1 255221874 255221925 -26971739 - MIR SINE MIR -34 228 177 1564 198 24 35 chr1 255221925 255222298 -26971366 + MER93b LTR ERV1 5 373 0 318 339 27 48 chr1 255222298 255222432 -26971232 - MIR SINE MIR -85 177 47 3394 136 25 0 chr1 255222764 255223278 -26970386 - MER1A DNA MER1_type 0 527 1 293 345 48 24 chr1 255224428 255224596 -26969068 + MIR3 SINE MIR 37 208 0 1800 108 15 37 chr1 255225575 255225843 -26967821 + AluSx SINE Alu 40 301 -11 816 153 8 8 chr1 255225941 255226072 -26967592 - FLAM_C SINE Alu -12 131 1 515 311 59 11 chr1 255226294 255226651 -26967013 - L1ME4a LINE L1 -217 5904 5531 1868 149 7 0 chr1 255226679 255226988 -26966676 - AluJb SINE Alu 0 311 1 370 287 80 92 chr1 255227111 255227312 -26966352 - L1ME4a LINE L1 -799 5347 5152 2012 147 3 6 chr1 255227312 255227625 -26966039 + AluSx SINE Alu 1 312 0 370 287 80 92 chr1 255227625 255227824 -26965840 - L1ME4a LINE L1 -994 5152 4952 288 276 133 10 chr1 255227926 255228024 -26965640 + LTR16A LTR ERVL 25 134 -316 584 258 28 42 chr1 255228049 255228202 -26965462 + LTR16A LTR ERVL 241 392 -58 2016 143 40 27 chr1 255228202 255228572 -26965092 + THE1C LTR MaLR 1 375 0 584 258 28 42 chr1 255228572 255228631 -26965033 + LTR16A LTR ERVL 392 450 0 737 265 59 71 chr1 255228638 255228978 -26964686 + MER46C DNA MER2_type 2 337 -1 367 331 46 41 chr1 255229046 255229951 -26963713 - L1ME4a LINE L1 -1408 4738 3829 685 302 138 19 chr1 255230300 255230863 -26962801 + L1MC4a LINE L1 5296 5925 -1883 2155 96 0 27 chr1 255230966 255231267 -26962397 + AluSq SINE Alu 1 293 -20 21 57 0 0 chr1 255231416 255231451 -26962213 + AT_rich Low_complexity Low_complexity 1 35 0 287 306 91 25 chr1 255231451 255231572 -26962092 - MER5A DNA MER1_type -56 133 5 501 304 108 35 chr1 255231925 255232297 -26961367 - L1ME4a LINE L1 -2838 3308 2910 1081 195 26 86 chr1 255232352 255232655 -26961009 + AluJo SINE Alu 12 296 -16 22 0 0 0 chr1 255232679 255232701 -26960963 + AT_rich Low_complexity Low_complexity 1 22 0 2427 24 0 14 chr1 255233227 255233537 -26960127 - AluY SINE Alu 0 306 1 1719 180 73 73 chr1 255233874 255234157 -26959507 + MER34C LTR ERV1 41 326 -259 2326 126 0 0 chr1 255234157 255234467 -26959197 - AluSg SINE Alu 0 310 1 1719 180 73 73 chr1 255234467 255234728 -26958936 + MER34C LTR ERV1 325 585 0 417 308 77 0 chr1 255234777 255234972 -26958692 + MIR SINE MIR 32 241 -21 2147 169 48 60 chr1 255235113 255235629 -26958035 + LTR54 LTR ERV1 1 510 0 804 244 28 63 chr1 255235638 255235892 -26957772 + MER65-int LTR ERV1 1909 2153 -4178 545 260 7 20 chr1 255235892 255236042 -26957622 + MER65-int LTR ERV1 2106 2253 -4078 376 237 1 98 chr1 255236090 255236249 -26957415 + MER65-int LTR ERV1 493 2558 -3773 2169 116 0 0 chr1 255236439 255236733 -26956931 + AluSg SINE Alu 1 294 -16 249 33 0 0 chr1 255236862 255236892 -26956772 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 392 248 36 15 chr1 255237635 255237772 -26955892 + MER65-int LTR ERV1 850 989 -4134 527 246 150 21 chr1 255237772 255238012 -26955652 + MER34C LTR ERV1 157 427 -158 1049 224 55 68 chr1 255238013 255238628 -26955036 + MER65-int LTR ERV1 1415 1831 -3292 1552 186 8 8 chr1 255238660 255238924 -26954740 + AluJo SINE Alu 34 297 -15 289 199 66 41 chr1 255238986 255239153 -26954511 + MER65-int LTR ERV1 1731 2496 -2375 1289 214 42 87 chr1 255239153 255239624 -26954040 - LTR7 LTR ERV1 0 450 1 654 67 0 67 chr1 255239970 255240075 -26953589 - L1PA6 LINE L1 0 6154 6057 31356 74 5 7 chr1 255240089 255245215 -26948449 - L1PA6 LINE L1 -190 5964 847 589 115 11 0 chr1 255245213 255245300 -26948364 - L1PA6 LINE L1 -6048 98 11 * 9693 229 21 30 chr1 255245686 255249026 -26944638 - HERVH LTR ERV1 -3540 2989 596 902 207 30 12 chr1 255249135 255249539 -26944125 - HERVH LTR ERV1 -7267 446 2 1275 188 53 94 chr1 255249540 255250009 -26943655 - LTR7 LTR ERV1 0 450 1 498 204 73 89 chr1 255250043 255250633 -26943031 + LOR1-int LTR ERV1 1552 3525 -2421 11260 193 47 6 chr1 255250647 255252925 -26940739 + L1M1 LINE L1 19 2388 -5177 1654 74 18 60 chr1 255252909 255253192 -26940472 + L1M1 LINE L1 2705 2975 -4590 * 2880 125 15 4 chr1 255253188 255253775 -26939889 - L1 LINE L1 -3789 3776 3186 3012 221 96 44 chr1 255253787 255254674 -26938990 + LOR1-int LTR ERV1 2709 3548 -2715 1804 133 0 8 chr1 255254674 255254923 -26938741 - AluSg SINE Alu -63 247 1 3012 221 96 44 chr1 255254923 255255889 -26937775 + LOR1-int LTR ERV1 3548 5855 -408 2024 256 23 6 chr1 255255925 255256457 -26937207 + LOR1-int LTR ERV1 6614 7154 -383 1462 197 55 11 chr1 255256874 255257148 -26936516 - AluJo SINE Alu -26 286 1 194 286 0 0 chr1 255258614 255258663 -26935001 + MIR SINE MIR 93 141 -67 344 319 113 11 chr1 255258818 255259003 -26934661 - MIR SINE MIR -17 245 42 507 302 14 14 chr1 255259760 255259899 -26933765 + MIR3 SINE MIR 30 168 -40 1412 214 97 42 chr1 255260081 255260534 -26933130 + MLT2B1 LTR ERVL 2 479 -41 216 135 0 0 chr1 255260541 255260578 -26933086 + (TG)n Simple_repeat Simple_repeat 1 37 0 291 167 0 0 chr1 255260581 255260629 -26933035 + MLT2B1 LTR ERVL 473 520 0 837 204 11 0 chr1 255260729 255260905 -26932759 + MER5B DNA MER1_type 1 178 0 270 331 50 2 chr1 255261025 255261197 -26932467 - MIR SINE MIR 0 262 45 260 279 58 39 chr1 255261467 255261571 -26932093 + L2 LINE L2 3204 3309 -4 303 28 0 0 chr1 255261828 255261864 -26931800 + (TC)n Simple_repeat Simple_repeat 1 36 0 284 241 0 0 chr1 255261864 255261922 -26931742 - AluJ/FRAM SINE Alu -22 280 223 1327 117 56 16 chr1 255262127 255262376 -26931288 - L1MA3 LINE L1 0 7724 7466 12022 159 56 30 chr1 255262411 255263756 -26929908 - L1MA3 LINE L1 -227 7497 6188 423 0 0 0 chr1 255263756 255263803 -26929861 + (TTTA)n Simple_repeat Simple_repeat 4 50 0 12022 159 56 30 chr1 255263803 255265543 -26928121 - L1MA3 LINE L1 -1536 6188 4494 2603 106 5 0 chr1 255265543 255265911 -26927753 - L1PA8A LINE L1 -18 6113 5744 12022 159 56 30 chr1 255265911 255268028 -26925636 - L1MA3 LINE L1 -3230 4494 2190 354 70 0 35 chr1 255268129 255268186 -26925478 + AluSp/q SINE Alu 249 303 0 2458 80 0 0 chr1 255268925 255269224 -26924440 - AluY SINE Alu -12 299 1 321 89 0 0 chr1 255269964 255270009 -26923655 + (TG)n Simple_repeat Simple_repeat 2 46 0 237 65 0 0 chr1 255270151 255270182 -26923482 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 249 139 0 0 chr1 255270263 255270299 -26923365 + MER53 DNA DNA 1 36 -153 * 445 121 154 0 chr1 255270295 255270386 -26923278 - MER53 DNA DNA -84 105 1 296 349 60 48 chr1 255271201 255271599 -26922065 + L2 LINE L2 2348 2750 -564 286 341 31 47 chr1 255271631 255271889 -26921775 + L2 LINE L2 2837 3090 -182 1935 254 73 10 chr1 255273391 255273896 -26919768 - MLT1H1 LTR MaLR -7 548 12 547 327 46 28 chr1 255274019 255274346 -26919318 + MER102b DNA MER1_type 9 341 0 1718 130 34 0 chr1 255274698 255274967 -26918697 + MER39 LTR ERV1 362 639 -68 408 287 128 15 chr1 255275004 255275339 -26918325 - L1M4 LINE L1 -1127 5019 4647 250 315 25 30 chr1 255275332 255275529 -26918135 - L1M4 LINE L1 -1757 4389 4194 * 682 262 5 10 chr1 255275535 255275741 -26917923 - L1M4 LINE L1 -2051 4095 3891 235 265 197 0 chr1 255275892 255276024 -26917640 - L1M4 LINE L1 -2447 3699 3542 568 271 32 27 chr1 255278227 255278415 -26915249 - L2 LINE L2 -1 3312 3124 538 266 26 19 chr1 255278625 255278800 -26914864 - MIR SINE MIR -50 212 38 207 325 102 49 chr1 255278874 255279032 -26914632 + L3b LINE CR1 1290 1469 -114 1163 214 5 5 chr1 255279032 255279256 -26914408 + MER58A DNA MER1_type 1 224 0 207 325 102 49 chr1 255279256 255279362 -26914302 + L3b LINE CR1 1469 1568 -15 310 292 80 0 chr1 255280054 255280167 -26913497 + MIR3 SINE MIR 68 189 -19 6318 155 21 7 chr1 255280471 255281601 -26912063 + L1MC1 LINE L1 5191 6333 0 210 336 37 8 chr1 255281788 255281922 -26911742 + L2 LINE L2 2724 2861 -453 1579 280 222 21 chr1 255282056 255283206 -26910458 - L2 LINE L2 0 3313 1937 269 285 85 39 chr1 255283253 255283383 -26910281 + L2 LINE L2 3137 3272 0 1704 145 67 0 chr1 255284617 255284722 -26908942 + AluJo SINE Alu 1 98 -214 207 0 0 0 chr1 255284722 255284745 -26908919 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1704 145 67 0 chr1 255284745 255284908 -26908756 + AluJo SINE Alu 98 287 -25 237 33 0 0 chr1 255284915 255284945 -26908719 + (CA)n Simple_repeat Simple_repeat 2 31 0 631 34 34 0 chr1 255284945 255285034 -26908630 + (GAAA)n Simple_repeat Simple_repeat 1 92 0 298 308 50 8 chr1 255286444 255286564 -26907100 + MIR SINE MIR 28 152 -110 2331 78 0 0 chr1 255286642 255286950 -26906714 - AluY SINE Alu 0 308 1 665 276 29 32 chr1 255287240 255287486 -26906178 + MIR SINE MIR 10 254 -8 195 308 26 13 chr1 255289693 255289771 -26903893 - MIR3 SINE MIR -15 193 115 2225 86 0 0 chr1 255290085 255290363 -26903301 + AluSc SINE Alu 5 282 -27 682 211 181 130 chr1 255291065 255291497 -26902167 - LTR16A1 LTR ERVL 0 457 4 2495 55 7 0 chr1 255291541 255291830 -26901834 + AluY SINE Alu 1 291 -20 2099 229 40 68 chr1 255291984 255292710 -26900954 - L1ME3A LINE L1 0 6170 5465 32 0 0 0 chr1 255292978 255293010 -26900654 + AT_rich Low_complexity Low_complexity 1 32 0 273 276 203 8 chr1 255294558 255294681 -26898983 + MER5A DNA MER1_type 43 189 0 4696 107 92 99 chr1 255294803 255296233 -26897431 + pTR5 LTR ERV1 66 2438 0 3607 70 0 5 chr1 255296248 255296694 -26896970 + MLT2A1 LTR ERVL 1 444 0 1694 159 3 41 chr1 255296726 255297021 -26896643 + AluJb SINE Alu 1 284 -28 225 177 177 0 chr1 255297047 255297109 -26896555 + MIR SINE MIR 80 152 -110 579 296 162 39 chr1 255297668 255298329 -26895335 - L2 LINE L2 0 3313 2569 288 216 102 40 chr1 255298568 255298744 -26894920 - MER97c DNA MER1_type? -37 1053 867 2504 243 75 28 chr1 255298886 255299704 -26893960 - MER97b DNA MER1_type? -195 858 3 603 266 60 30 chr1 255299953 255300186 -26893478 - MER102a DNA MER1_type -18 312 73 240 250 0 18 chr1 255300197 255300253 -26893411 + GA-rich Low_complexity Low_complexity 3 57 0 338 139 241 0 chr1 255300409 255300488 -26893176 + MER4A LTR ERV1 1 98 -566 1760 115 164 80 chr1 255300488 255300861 -26892803 + MER4A LTR ERV1 261 664 0 1548 209 118 31 chr1 255301820 255302245 -26891419 - MLT1C LTR MaLR 0 467 6 368 224 98 63 chr1 255302807 255302981 -26890683 - MIR SINE MIR -30 232 53 274 268 73 24 chr1 255306367 255306490 -26887174 - MIR SINE MIR -10 252 124 210 296 74 49 chr1 255306755 255306917 -26886747 - MIR SINE MIR -2 260 95 859 256 10 10 chr1 255307407 255307606 -26886058 + MER63A DNA MER1_type 11 209 -1 666 128 10 10 chr1 255308332 255308434 -26885230 - THE1B LTR MaLR 0 364 263 * 687 81 152 0 chr1 255308432 255308531 -26885133 - THE1B LTR MaLR -250 114 1 1586 77 0 5 chr1 255308531 255308739 -26884925 - THE1B-int LTR MaLR 0 1580 1374 * 8218 101 7 0 chr1 255308735 255309830 -26883834 - THE1B-int LTR MaLR -460 1120 18 2193 128 48 17 chr1 255309845 255310198 -26883466 - THE1B LTR MaLR 0 364 1 2133 119 12 12 chr1 255310198 255310507 -26883157 + LOR1a LTR ERV1 18 329 -168 235 163 139 0 chr1 255310506 255310549 -26883115 - LOR1b LTR ERV1 -62 399 351 * 1178 112 0 0 chr1 255310607 255310768 -26882896 + LOR1a LTR ERV1 337 497 0 278 236 45 11 chr1 255310818 255310907 -26882757 + MARNA DNA Mariner 245 336 -250 1053 178 9 33 chr1 255312134 255312347 -26881317 - MER3 DNA MER1_type -1 208 1 807 304 58 30 chr1 255313240 255313638 -26880026 + MLT1I LTR MaLR 1 409 0 579 133 0 0 chr1 255313939 255314022 -26879642 + AluS SINE Alu 2 84 -229 1262 296 26 17 chr1 255314040 255314456 -26879208 - LTR16A LTR ERVL 0 450 31 241 319 104 20 chr1 255317840 255318024 -26875640 - MIR SINE MIR -50 212 18 515 285 31 26 chr1 255319742 255319935 -26873729 + MIR SINE MIR 29 222 -40 3212 193 56 14 chr1 255319956 255320583 -26873081 + MER82 DNA MER2_type 1 653 0 539 286 24 38 chr1 255321166 255321241 -26872423 - MIR SINE MIR -36 226 151 2433 91 0 0 chr1 255321241 255321550 -26872114 - AluSc SINE Alu 0 309 1 539 286 24 38 chr1 255321550 255321684 -26871980 - MIR SINE MIR -111 151 20 298 253 29 68 chr1 255322239 255322368 -26871296 + MLT1I LTR MaLR 81 174 -235 574 206 60 25 chr1 255322577 255322745 -26870919 + MLT1I LTR MaLR 231 447 -3 477 0 0 0 chr1 255324537 255324590 -26869074 + (CA)n Simple_repeat Simple_repeat 2 54 0 294 29 0 0 chr1 255324589 255324624 -26869040 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 238 299 67 12 chr1 255325813 255325977 -26867687 - L1ME3A LINE L1 -8 6162 5990 1629 211 52 57 chr1 255326044 255326504 -26867160 - MLT1C LTR MaLR -2 465 8 899 196 27 55 chr1 255326867 255327071 -26866593 + MER31B LTR ERV1 6 203 -263 1585 188 126 42 chr1 255327071 255327485 -26866179 - MSTB2 LTR MaLR 0 457 1 775 261 70 12 chr1 255327485 255327742 -26865922 + MER31B LTR ERV1 195 466 0 1923 224 91 66 chr1 255327743 255328559 -26865105 - L1MC5 LINE L1 -564 7397 6568 234 225 0 0 chr1 255328559 255328639 -26865025 + (TA)n Simple_repeat Simple_repeat 2 81 0 494 325 78 47 chr1 255328842 255329549 -26864115 - HAL1b LINE L1 -517 831 103 21 0 0 0 chr1 255329580 255329601 -26864063 + AT_rich Low_complexity Low_complexity 1 21 0 2382 80 0 0 chr1 255329699 255329986 -26863678 - AluY SINE Alu -24 287 1 1440 223 65 33 chr1 255331640 255332151 -26861513 + L1MC5 LINE L1 7405 7931 -30 184 212 0 0 chr1 255332897 255332930 -26860734 + L2 LINE L2 3262 3294 -19 630 276 35 35 chr1 255333208 255333411 -26860253 + MIR SINE MIR 45 247 -15 2491 78 3 0 chr1 255334050 255334356 -26859308 - AluSc SINE Alu -2 307 1 24 53 0 0 chr1 255336156 255336194 -26857470 + AT_rich Low_complexity Low_complexity 1 38 0 2507 54 16 25 chr1 255336195 255336509 -26857155 + AluY SINE Alu 1 311 0 407 183 12 0 chr1 255336600 255336682 -26856982 - MER33 DNA MER1_type 0 363 281 1094 139 0 0 chr1 255336694 255336838 -26856826 + FRAM SINE Alu 11 154 -22 970 224 38 8 chr1 255336838 255337086 -26856578 - MER33 DNA MER1_type -74 250 1 1194 204 14 0 chr1 255337130 255337351 -26856313 - AluJb SINE Alu -5 307 84 192 176 0 0 chr1 255337735 255337769 -26855895 - L2 LINE L2 -8 3264 3231 183 371 0 52 chr1 255337868 255337984 -26855680 - L2 LINE L2 -194 3078 2969 249 271 0 29 chr1 255338075 255338145 -26855519 + L3 LINE CR1 891 958 -619 247 289 99 33 chr1 255338346 255338467 -26855197 + MIR3 SINE MIR 1 129 -79 291 28 0 0 chr1 255339226 255339262 -26854402 + (CA)n Simple_repeat Simple_repeat 1 36 0 819 200 95 50 chr1 255340160 255340360 -26853304 - MER63A DNA MER1_type -1 209 1 317 219 85 0 chr1 255340533 255340615 -26853049 + L2 LINE L2 3223 3311 -2 288 374 131 24 chr1 255341710 255342290 -26851374 + L2 LINE L2 2088 2729 -585 296 344 56 25 chr1 255342334 255342494 -26851170 + MER5A DNA MER1_type 25 189 0 257 176 0 20 chr1 255343365 255343416 -26850248 + L2 LINE L2 3262 3311 -2 321 267 69 10 chr1 255344094 255344195 -26849469 - MIR3 SINE MIR -15 193 87 388 342 116 0 chr1 255344649 255344804 -26848860 + MIR SINE MIR 16 188 -74 234 0 0 0 chr1 255345643 255345669 -26847995 + (T)n Simple_repeat Simple_repeat 1 26 0 558 244 18 0 chr1 255345794 255345958 -26847706 + L2 LINE L2 2699 2865 -449 534 287 113 22 chr1 255347823 255348053 -26845611 + MIR SINE MIR 12 262 0 206 363 0 0 chr1 255348150 255348230 -26845434 - MIR SINE MIR -87 121 42 261 278 42 28 chr1 255351698 255351842 -26841822 - MLT1J2 LTR MaLR -21 429 284 255 231 291 26 chr1 255351899 255352016 -26841648 - MLT1I LTR MaLR -234 175 28 204 40 0 0 chr1 255352176 255352201 -26841463 + (A)n Simple_repeat Simple_repeat 1 25 0 516 265 19 37 chr1 255353950 255354112 -26839552 + MER5B DNA MER1_type 1 159 -19 467 215 7 104 chr1 255354410 255354554 -26839110 - MIR SINE MIR -65 143 28 891 217 74 0 chr1 255355067 255355242 -26838422 + MER5A DNA MER1_type 1 188 -1 424 213 0 0 chr1 255355575 255355650 -26838014 + MER2 DNA MER2_type 271 345 0 282 87 0 0 chr1 255355678 255355724 -26837940 + (TA)n Simple_repeat Simple_repeat 1 46 0 279 0 0 0 chr1 255355727 255355758 -26837906 + (TC)n Simple_repeat Simple_repeat 2 32 0 363 23 0 0 chr1 255355774 255355818 -26837846 + (GA)n Simple_repeat Simple_repeat 2 45 0 1173 225 48 209 chr1 255355876 255356237 -26837427 + L2 LINE L2 59 476 -2838 2163 115 3 0 chr1 255356237 255356533 -26837131 - AluSc SINE Alu -12 297 1 1173 225 48 209 chr1 255356533 255357053 -26836611 + L2 LINE L2 476 717 -2597 1924 108 6 81 chr1 255357053 255357376 -26836288 - AluSx SINE Alu -13 299 1 1173 225 48 209 chr1 255357376 255357635 -26836029 + L2 LINE L2 717 1016 -2298 1838 184 67 32 chr1 255357660 255358035 -26835629 + MSTD LTR MaLR 1 388 -8 1606 257 342 26 chr1 255358039 255359043 -26834621 + L2 LINE L2 1055 1740 -1573 2224 83 26 23 chr1 255359043 255359345 -26834319 - AluY SINE Alu -8 303 1 1606 257 342 26 chr1 255359345 255359922 -26833742 + L2 LINE L2 1740 2133 -1180 921 24 24 0 chr1 255359922 255360046 -26833618 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 1606 257 342 26 chr1 255360046 255360171 -26833493 + L2 LINE L2 2133 3311 -2 216 244 0 0 chr1 255360350 255360376 -26833288 + CT-rich Low_complexity Low_complexity 4 32 -16 1668 182 13 3 chr1 255360376 255360678 -26832986 - AluJo SINE Alu -7 305 1 216 244 0 0 chr1 255360678 255360696 -26832968 + CT-rich Low_complexity Low_complexity 31 48 0 580 203 42 0 chr1 255360713 255360831 -26832833 - MER94 DNA DNA -11 123 1 607 239 23 0 chr1 255362219 255362349 -26831315 - MER94 DNA DNA -1 133 1 292 303 22 0 chr1 255362394 255362483 -26831181 + L3 LINE CR1 1391 1481 -96 202 255 24 32 chr1 255362757 255362840 -26830824 - MIR SINE MIR -68 140 65 300 289 186 32 chr1 255363291 255363544 -26830120 - L3 LINE CR1 -198 1379 1088 1695 187 10 3 chr1 255363763 255364057 -26829607 + AluJb SINE Alu 1 296 -16 23 33 0 0 chr1 255364202 255364232 -26829432 + AT_rich Low_complexity Low_complexity 1 30 0 2712 248 51 32 chr1 255364863 255365875 -26827789 - L1M4c LINE L1 -4825 1821 785 1729 154 6 60 chr1 255366372 255366643 -26827021 - AluJb SINE Alu -10 302 49 1847 134 142 39 chr1 255366643 255367030 -26826634 - MSTA LTR MaLR 0 428 2 1729 154 6 60 chr1 255367030 255367077 -26826587 - AluJb SINE Alu -263 49 1 3850 177 16 4 chr1 255368649 255369354 -26824310 - L1MB4 LINE L1 -32 6148 5436 1782 193 83 9 chr1 255369378 255370021 -26823643 + L1ME1 LINE L1 5016 5706 -458 657 305 15 0 chr1 255370147 255370344 -26823320 + L1ME1 LINE L1 5953 6152 -14 876 114 12 60 chr1 255370344 255370510 -26823154 + MLT1A1 LTR MaLR 1 158 -207 1370 49 0 0 chr1 255370510 255370673 -26822991 + AluY SINE Alu 139 301 -10 787 188 77 11 chr1 255370673 255370854 -26822810 + MLT1A1 LTR MaLR 148 340 -25 28 29 0 0 chr1 255371240 255371275 -26822389 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr1 255371664 255371709 -26821955 + AT_rich Low_complexity Low_complexity 1 45 0 4976 116 29 21 chr1 255371964 255372303 -26821361 - L1PBa LINE L1 -4426 2437 2102 7140 52 17 0 chr1 255372303 255373553 -26820111 - L1PA8 LINE L1 -2 6170 4916 4976 116 29 21 chr1 255373553 255374116 -26819548 - L1PBa LINE L1 -4761 2102 1528 15326 60 3 2 chr1 255374216 255377005 -26816659 + L1PA6 LINE L1 3334 6154 0 404 250 10 10 chr1 255377460 255377556 -26816108 - MIR SINE MIR -18 244 149 226 368 132 9 chr1 255377706 255377820 -26815844 + L2 LINE L2 3143 3270 -2 7099 45 9 5 chr1 255378066 255379212 -26814452 + L1PA7 LINE L1 5003 6154 0 239 255 11 11 chr1 255379234 255379328 -26814336 + (TA)n Simple_repeat Simple_repeat 1 94 0 184 378 89 0 chr1 255379366 255379456 -26814208 - L2 LINE L2 -62 3210 3113 228 315 149 22 chr1 255379578 255379759 -26813905 - L2 LINE L2 -233 3039 2836 246 360 0 12 chr1 255380405 255380491 -26813173 + L2 LINE L2 3187 3271 -1 199 321 71 0 chr1 255380613 255380669 -26812995 - L2 LINE L2 -54 3218 3159 773 188 0 0 chr1 255381497 255381625 -26812039 + FLAM_A SINE Alu 1 128 -5 210 71 0 0 chr1 255381625 255381653 -26812011 + (GA)n Simple_repeat Simple_repeat 1 28 0 305 286 68 27 chr1 255381805 255381952 -26811712 - MIR SINE MIR -12 250 98 1378 228 126 30 chr1 255383496 255383957 -26809707 - MLT1D LTR MaLR 0 505 1 341 331 50 8 chr1 255384470 255384591 -26809073 - MER5A DNA MER1_type -28 161 36 856 238 65 118 chr1 255384693 255385245 -26808419 + L2 LINE L2 2792 3313 0 357 82 0 0 chr1 255386191 255386240 -26807424 + (TG)n Simple_repeat Simple_repeat 2 50 0 4970 162 10 20 chr1 255386555 255387799 -26805865 + L1MA8 LINE L1 5057 6286 -5 1904 185 90 7 chr1 255388083 255388466 -26805198 + MSTB2 LTR MaLR 1 424 -33 1110 104 35 55 chr1 255388466 255388668 -26804996 - L1PA13 LINE L1 0 6163 5966 1904 185 90 7 chr1 255388668 255388706 -26804958 + MSTB2 LTR MaLR 424 457 0 554 312 65 43 chr1 255389188 255389960 -26803704 + L1MEc LINE L1 446 1234 -4885 295 274 96 15 chr1 255389999 255390305 -26803359 + L1MEc LINE L1 1358 1671 -990 386 236 51 67 chr1 255390609 255390804 -26802860 + L1MEc LINE L1 1973 2164 -3965 11105 115 18 17 chr1 255390810 255392641 -26801023 - Tigger1 DNA MER2_type 0 2418 586 3068 39 0 10 chr1 255392641 255393056 -26800608 - L1P LINE L1 -2918 3228 2818 7144 55 7 1 chr1 255393056 255393978 -26799686 + L1PA5 LINE L1 5228 6154 0 3187 157 31 0 chr1 255393980 255394552 -26799112 - Tigger1 DNA MER2_type -1828 590 1 21 36 0 0 chr1 255395133 255395161 -26798503 + AT_rich Low_complexity Low_complexity 1 28 0 3059 116 8 0 chr1 255395268 255395786 -26797878 + L1M1 LINE L1 2362 2883 -4682 354 256 47 0 chr1 255395794 255395880 -26797784 + L1MC4 LINE L1 6614 6703 -1339 * 374 239 0 22 chr1 255395818 255395910 -26797754 - L1MC4 LINE L1 -1339 6703 6614 245 106 0 43 chr1 255395912 255395959 -26797705 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 234 276 23 0 chr1 255395971 255396058 -26797606 + L1MC4 LINE L1 6615 6703 -1339 * 236 303 0 0 chr1 255395994 255396083 -26797581 - L1MC4 LINE L1 -1339 6703 6615 306 283 0 33 chr1 255396085 255396177 -26797487 + L1MC4 LINE L1 6615 6703 -1339 264 226 0 0 chr1 255396178 255396240 -26797424 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 240 261 23 0 chr1 255396243 255396331 -26797333 - L1MC4 LINE L1 -1339 6703 6614 228 258 0 22 chr1 255396279 255396368 -26797296 + L1MC4 LINE L1 6616 6702 -1340 * 326 292 45 0 chr1 255396370 255396459 -26797205 + L1MC4 LINE L1 6615 6707 -1335 297 47 0 0 chr1 255396459 255396502 -26797162 - L1M1 LINE L1 -4208 3357 3315 297 47 0 0 chr1 255396533 255396576 -26797088 - L1M1 LINE L1 -4208 3357 3315 471 83 0 83 chr1 255396607 255396703 -26796961 - L1M1 LINE L1 -4208 3357 3270 22 0 0 0 chr1 255396705 255396727 -26796937 + AT_rich Low_complexity Low_complexity 1 22 0 14065 157 19 16 chr1 255396727 255401546 -26792118 + L1MA3 LINE L1 2892 7724 0 413 324 14 7 chr1 255401883 255402028 -26791636 + MIR SINE MIR 106 251 -11 18315 101 11 25 chr1 255403000 255409324 -26784340 + L1PA7 LINE L1 8 6460 -9 1955 162 93 6 chr1 255409701 255410065 -26783599 + MSTD LTR MaLR 1 396 0 416 266 46 29 chr1 255410189 255410362 -26783302 - MIR SINE MIR -8 254 79 1582 196 0 42 chr1 255410597 255410882 -26782782 + AluJo SINE Alu 2 274 -38 189 121 0 0 chr1 255411398 255411431 -26782233 + (TAA)n Simple_repeat Simple_repeat 1 33 0 2160 128 0 13 chr1 255412092 255412405 -26781259 + AluSx SINE Alu 1 309 -3 323 196 21 41 chr1 255412632 255412729 -26780935 + MER53 DNA DNA 1 95 -94 219 308 33 11 chr1 255412840 255412931 -26780733 + L3b LINE CR1 1277 1369 -214 199 295 0 16 chr1 255413039 255413100 -26780564 - MIR SINE MIR -174 88 29 308 294 59 10 chr1 255413566 255413668 -26779996 + L2 LINE L2 3202 3308 -5 635 260 99 27 chr1 255413864 255414087 -26779577 + MIR SINE MIR 20 258 -4 226 256 0 100 chr1 255414494 255414584 -26779080 - L2 LINE L2 -1 3312 3232 426 20 0 0 chr1 255414708 255414759 -26778905 + (CA)n Simple_repeat Simple_repeat 1 51 0 1202 173 190 44 chr1 255414982 255415387 -26778277 + MER31B LTR ERV1 1 464 -2 337 267 158 42 chr1 255416941 255417061 -26776603 + MIR SINE MIR 98 231 -31 222 378 20 0 chr1 255418009 255418107 -26775557 - L2 LINE L2 -222 3050 2951 4933 165 24 10 chr1 255418136 255419027 -26774637 + MER4D LTR ERV1 1 903 0 368 291 29 51 chr1 255419726 255419901 -26773763 - MIR SINE MIR 0 262 92 1095 172 5 0 chr1 255420195 255420381 -26773283 + MER5A DNA MER1_type 3 189 0 204 125 0 0 chr1 255420412 255420444 -26773220 + (A)n Simple_repeat Simple_repeat 1 32 0 1723 180 0 20 chr1 255420533 255420838 -26772826 + AluJo SINE Alu 6 304 -8 414 266 21 28 chr1 255420899 255421042 -26772622 - MIR3 SINE MIR -64 144 3 5236 122 9 31 chr1 255421565 255421718 -26771946 + L1MA2 LINE L1 5454 5609 -695 2235 117 0 10 chr1 255421718 255422026 -26771638 + AluSq SINE Alu 1 305 -8 5236 122 9 31 chr1 255422026 255422742 -26770922 + L1MA2 LINE L1 5609 6304 0 2375 96 0 6 chr1 255423885 255424197 -26769467 + AluSx SINE Alu 1 310 -2 370 186 10 21 chr1 255425983 255426080 -26767584 + GA-rich Low_complexity Low_complexity 2 97 0 230 238 95 0 chr1 255426205 255426289 -26767375 + L2 LINE L2 1816 1907 -1407 2031 174 26 5 chr1 255426290 255426675 -26766989 + MSTB LTR MaLR 1 393 -33 341 347 50 28 chr1 255426775 255427095 -26766569 + L2 LINE L2 1981 2307 -1007 12735 189 14 10 chr1 255427139 255430892 -26762772 + L1PA16 LINE L1 1 3659 -3190 2379 117 43 31 chr1 255430896 255431314 -26762350 - MSTA LTR MaLR -5 423 1 5067 169 24 10 chr1 255431314 255432247 -26761417 - MSTA-int LTR MaLR 0 1651 706 1450 142 12 0 chr1 255432253 255432507 -26761157 - MSTA-int LTR MaLR -1394 257 1 2343 129 45 40 chr1 255432507 255432738 -26760926 - MSTA LTR MaLR 0 428 192 2243 85 0 0 chr1 255432738 255433051 -26760613 - AluY SINE Alu 0 313 1 2343 129 45 40 chr1 255433051 255433244 -26760420 - MSTA LTR MaLR -236 192 1 2957 228 73 22 chr1 255433244 255433784 -26759880 + L1PA16 LINE L1 3655 4166 -2683 225 0 0 0 chr1 255433784 255433809 -26759855 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2957 228 73 22 chr1 255433809 255434257 -26759407 + L1PA16 LINE L1 4166 4693 -2156 * 3729 120 2 2 chr1 255434255 255434864 -26758800 - L1PA8 LINE L1 -966 5180 4572 6164 104 10 3 chr1 255434864 255435861 -26757803 + L1PA8 LINE L1 5170 6172 0 5623 214 10 6 chr1 255435869 255436290 -26757374 + L1PA16 LINE L1 4682 5100 -1769 2009 95 36 0 chr1 255436290 255436591 -26757073 + AluSq SINE Alu 1 311 0 5623 214 10 6 chr1 255436591 255438361 -26755303 + L1PA16 LINE L1 5100 6860 -9 5335 160 30 7 chr1 255438366 255439362 -26754302 + L1MC1 LINE L1 5315 6333 0 951 189 154 4 chr1 255439530 255439763 -26753901 + L1ME LINE L1 5407 5674 -492 2325 115 53 0 chr1 255439986 255440342 -26753322 + THE1C LTR MaLR 1 375 0 2231 100 10 0 chr1 255441002 255441293 -26752371 - AluSc SINE Alu -15 294 1 185 307 101 37 chr1 255441990 255442179 -26751485 + L2 LINE L2 2821 3021 -251 268 111 32 0 chr1 255442480 255442543 -26751121 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1959 38 0 0 chr1 255443296 255443533 -26750131 - L1PA4 LINE L1 0 6155 5919 250 239 0 0 chr1 255443833 255443904 -26749760 + MER112 DNA MER1_type 155 225 -35 2446 111 31 19 chr1 255444686 255445046 -26748618 + THE1B LTR MaLR 1 364 0 422 293 143 29 chr1 255445075 255445355 -26748309 - MLT1L LTR MaLR -130 485 174 228 309 0 15 chr1 255445310 255445378 -26748286 - LTR67 LTR ERVL -390 167 101 * 313 295 169 6 chr1 255446333 255446499 -26747165 - MIR SINE MIR -21 241 49 1840 152 7 10 chr1 255446507 255446796 -26746868 + AluSx SINE Alu 22 309 -3 498 13 79 0 chr1 255446801 255446877 -26746787 + GA-rich Low_complexity Low_complexity 3 84 0 950 278 66 61 chr1 255446889 255447962 -26745702 - L1MCa LINE L1 -4403 2719 1434 1273 220 35 48 chr1 255447965 255448299 -26745365 + MLT1A2 LTR MaLR 4 341 -126 198 71 0 0 chr1 255448299 255448327 -26745337 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2170 108 0 0 chr1 255448327 255448604 -26745060 - AluSc SINE Alu -32 277 1 1273 220 35 48 chr1 255448604 255448643 -26745021 + MLT1A2 LTR MaLR 339 467 0 1217 221 30 3 chr1 255448654 255448957 -26744707 - L1MCa LINE L1 -5007 1416 1106 741 288 20 54 chr1 255449057 255449352 -26744312 - L1MCa LINE L1 -5355 1068 784 292 88 35 0 chr1 255454829 255454886 -26738778 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 500 306 21 16 chr1 255455429 255455615 -26738049 + MER5A DNA MER1_type 1 187 -2 1262 104 11 0 chr1 255456664 255456847 -26736817 - L1PA13 LINE L1 -5 6158 5974 1869 96 121 0 chr1 255458169 255458441 -26735223 + AluSg SINE Alu 1 305 -5 1295 283 14 8 chr1 255458457 255458818 -26734846 - LTR16A LTR ERVL -36 414 52 774 297 85 20 chr1 255459205 255459948 -26733716 + L1MEc LINE L1 990 1780 -4616 22 35 0 0 chr1 255460197 255460226 -26733438 + AT_rich Low_complexity Low_complexity 1 29 0 53 0 0 0 chr1 255462854 255462907 -26730757 + AT_rich Low_complexity Low_complexity 1 53 0 192 40 0 0 chr1 255463177 255463202 -26730462 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 3988 179 52 21 chr1 255463208 255463839 -26729825 - L1PB4 LINE L1 -23 6133 5523 2603 71 0 0 chr1 255463839 255464150 -26729514 - AluY SINE Alu 0 311 1 3988 179 52 21 chr1 255464150 255465210 -26728454 - L1PB4 LINE L1 -633 5523 4384 3901 54 18 4 chr1 255465585 255466292 -26727372 - L1PA6 LINE L1 -380 5774 5064 2994 55 0 0 chr1 255466292 255466657 -26727007 + L1PA6 LINE L1 5776 6141 -13 288 0 0 0 chr1 255466661 255466693 -26726971 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2124 134 0 0 chr1 255467551 255467850 -26725814 + AluSx SINE Alu 1 299 -13 345 149 0 0 chr1 255468725 255468792 -26724872 + (TG)n Simple_repeat Simple_repeat 2 68 0 649 72 0 10 chr1 255468869 255468966 -26724698 + L1MA2 LINE L1 6209 6304 0 663 201 6 28 chr1 255469432 255469611 -26724053 - L1P LINE L1 -804 5342 5168 2157 133 20 6 chr1 255469647 255469993 -26723671 + L1PB3 LINE L1 5802 6152 -2 29 47 0 0 chr1 255469993 255470036 -26723628 + AT_rich Low_complexity Low_complexity 1 43 0 474 155 124 0 chr1 255470449 255470578 -26723086 - L1MA7 LINE L1 0 6291 6147 1921 148 46 38 chr1 255470581 255470953 -26722711 - THE1C LTR MaLR 0 375 1 417 20 0 0 chr1 255471644 255471694 -26721970 + (CA)n Simple_repeat Simple_repeat 2 51 0 326 343 43 19 chr1 255473791 255473998 -26719666 - L1ME LINE L1 -408 5713 5502 568 277 76 27 chr1 255474121 255474345 -26719319 + MIR SINE MIR 25 259 -3 234 354 24 0 chr1 255474371 255474453 -26719211 + L2 LINE L2 3186 3269 -3 2104 129 0 19 chr1 255474855 255475164 -26718500 + AluSq SINE Alu 1 303 -10 407 147 53 0 chr1 255475588 255475663 -26718001 + MLT1D LTR MaLR 1 79 -426 1848 202 54 7 chr1 255475670 255476076 -26717588 + MSTB1 LTR MaLR 8 432 0 2104 268 59 48 chr1 255476116 255477258 -26716406 - HAL1 LINE L1 -821 1686 533 619 341 52 70 chr1 255477505 255477963 -26715701 + L2 LINE L2 2818 3267 -5 202 189 0 0 chr1 255477970 255478007 -26715657 + GA-rich Low_complexity Low_complexity 4 40 0 2761 10 0 0 chr1 255478154 255478455 -26715209 + AluYa5 SINE Alu 1 301 -10 2486 139 24 56 chr1 255478641 255479143 -26714521 - LTR19A LTR ERV1 0 486 1 2369 209 51 13 chr1 255480405 255480935 -26712729 + MER68 LTR ERV1 10 559 -3 761 255 20 0 chr1 255481939 255482135 -26711529 + MIR SINE MIR 48 247 -15 196 272 99 12 chr1 255483665 255483746 -26709918 - MIR SINE MIR -6 256 169 2084 151 64 17 chr1 255484163 255484567 -26709097 - MSTB LTR MaLR 0 426 4 1103 78 0 14 chr1 255485133 255485274 -26708390 - AluSg1 SINE Alu -170 139 1 329 312 0 51 chr1 255485290 255485350 -26708314 + L1MEd LINE L1 1035 1097 -5022 2380 134 20 0 chr1 255485350 255485707 -26707957 - THE1B LTR MaLR 0 364 1 329 312 0 51 chr1 255485707 255485803 -26707861 + L1MEd LINE L1 1097 1183 -4936 415 334 16 9 chr1 255485831 255486169 -26707495 + L1MEd LINE L1 1249 1630 -860 283 261 106 25 chr1 255487092 255487291 -26706373 + L1MEd LINE L1 997 1211 -4908 298 284 122 20 chr1 255487360 255487508 -26706156 + L2 LINE L2 3140 3302 -11 1412 236 143 41 chr1 255490436 255490870 -26702794 + HsTC2a DNA Tc2 11 538 -1362 4034 135 32 39 chr1 255490870 255491597 -26702067 + MER72 LTR ERV1 1 722 0 1412 236 143 41 chr1 255491597 255491826 -26701838 + HsTC2a DNA Tc2 538 742 -2 187 389 0 0 chr1 255491881 255491953 -26701711 + L2 LINE L2 2839 2910 -362 481 319 65 44 chr1 255491953 255492338 -26701326 + MLT1J1 LTR MaLR 1 393 -53 4588 155 80 16 chr1 255492499 255493353 -26700311 - MER21A LTR ERV1 -23 908 1 309 177 323 0 chr1 255493354 255493450 -26700214 + L2 LINE L2 3012 3138 -175 5314 126 19 21 chr1 255493454 255494351 -26699313 - MER4D LTR ERV1 -8 895 1 294 284 136 30 chr1 255494351 255494520 -26699144 + L2 LINE L2 3127 3313 0 364 248 110 14 chr1 255495437 255495582 -26698082 - MER103 DNA DNA 0 166 8 3154 102 2 32 chr1 255498671 255499169 -26694495 + LTR22B LTR ERVK 7 489 -3 314 240 10 21 chr1 255499667 255499763 -26693901 + (TG)n Simple_repeat Simple_repeat 2 96 0 1041 203 94 0 chr1 255499910 255500112 -26693552 + MER58A DNA MER1_type 4 224 0 819 129 136 0 chr1 255500136 255500283 -26693381 + LTR49 LTR ERV1 260 426 -169 394 163 44 74 chr1 255500273 255500408 -26693256 + LTR48 LTR ERV1 602 732 -55 * 489 319 78 30 chr1 255500764 255501486 -26692178 + HAL1b LINE L1 67 822 -526 1861 156 10 3 chr1 255501534 255501822 -26691842 + AluJb SINE Alu 1 290 -22 2008 104 21 7 chr1 255502144 255502452 -26691212 + AluSx SINE Alu 1 312 0 314 280 96 70 chr1 255502545 255502750 -26690914 + L1M4 LINE L1 2205 2403 -3743 3378 87 87 69 chr1 255502750 255503347 -26690317 - MER4B LTR ERV1 0 610 3 314 280 96 70 chr1 255503347 255503796 -26689868 + L1M4 LINE L1 2403 2887 -3259 2119 113 7 0 chr1 255503796 255504087 -26689577 + AluSx SINE Alu 1 293 -19 314 280 96 70 chr1 255504087 255504246 -26689418 + L1M4 LINE L1 2887 3040 -3106 302 262 19 51 chr1 255504322 255504536 -26689128 + L1M4 LINE L1 3342 3548 -2598 529 299 106 48 chr1 255505378 255505813 -26687851 + LTR33 LTR ERVL 4 463 -58 186 230 81 40 chr1 255505821 255505895 -26687769 + L2 LINE L2 1357 1433 -1881 348 273 91 40 chr1 255506550 255506750 -26686914 + MIR SINE MIR 19 228 -34 1527 217 3 10 chr1 255506752 255507061 -26686603 - AluJo SINE Alu -5 307 1 754 292 29 12 chr1 255507392 255507635 -26686029 - MIR SINE MIR 0 262 16 2280 150 50 14 chr1 255507847 255508266 -26685398 - LTR24 LTR ERV1 0 467 34 1894 131 82 0 chr1 255508268 255508550 -26685114 + AluSx SINE Alu 3 307 -5 1160 117 105 0 chr1 255508554 255508725 -26684939 + AluJb SINE Alu 112 300 -12 22 35 0 0 chr1 255508737 255508766 -26684898 + AT_rich Low_complexity Low_complexity 1 29 0 275 27 0 0 chr1 255508774 255508811 -26684853 - LTR24 LTR ERV1 -421 46 10 261 373 59 53 chr1 255509840 255510296 -26683368 - L2 LINE L2 -1 3271 2813 917 196 5 26 chr1 255510347 255510536 -26683128 - MER5A DNA MER1_type -1 188 4 1793 190 122 91 chr1 255510951 255511768 -26681896 + LTR1B LTR ERV1 1 1020 0 2198 168 19 64 chr1 255511920 255512389 -26681275 - LTR32 LTR ERVL -5 466 19 333 255 20 20 chr1 255512728 255512830 -26680834 - MER5C DNA MER1_type -3 321 220 2088 141 64 2 chr1 255512830 255513235 -26680429 + L1MC3 LINE L1 7356 7785 0 228 187 159 19 chr1 255513235 255513342 -26680322 - MER5C DNA MER1_type -98 226 105 1941 121 4 11 chr1 255513935 255514215 -26679449 - AluSg SINE Alu -11 299 22 816 184 94 36 chr1 255515482 255515759 -26677905 + L1ME1 LINE L1 3759 4051 -2095 1904 164 35 16 chr1 255515759 255516132 -26677532 + MLT1B LTR MaLR 7 386 -4 4321 219 31 32 chr1 255516140 255516829 -26676835 + L1ME1 LINE L1 4067 4756 -1410 927 204 110 0 chr1 255516829 255517020 -26676644 + MER58C DNA MER1_type 1 212 -3 4321 219 31 32 chr1 255517020 255518436 -26675228 + L1ME1 LINE L1 4756 6161 -5 440 131 0 12 chr1 255520517 255520601 -26673063 + (GA)n Simple_repeat Simple_repeat 2 84 0 1870 252 98 28 chr1 255520896 255521735 -26671929 + L2 LINE L2 2308 3206 -107 349 291 69 42 chr1 255522003 255522192 -26671472 + MLT1J LTR MaLR 123 316 -195 296 211 35 52 chr1 255522193 255522341 -26671323 + MLT1J1 LTR MaLR 310 489 0 423 0 0 0 chr1 255523474 255523521 -26670143 + (TG)n Simple_repeat Simple_repeat 1 47 0 494 193 22 7 chr1 255524991 255525126 -26668538 - L1MA10 LINE L1 -2 6332 6196 234 361 95 25 chr1 255525159 255525317 -26668347 + MIR3 SINE MIR 34 202 -6 1223 243 27 24 chr1 255525478 255525812 -26667852 + MER45C DNA AcHobo 1 335 -618 523 310 41 0 chr1 255525882 255526053 -26667611 + MER45C DNA AcHobo 363 540 -413 247 146 0 0 chr1 255526101 255526142 -26667522 + MER45C DNA AcHobo 902 942 -11 2471 178 24 11 chr1 255526555 255527016 -26666648 - MLT1C LTR MaLR 0 467 1 207 274 20 0 chr1 255527400 255527451 -26666213 + (CA)n Simple_repeat Simple_repeat 2 53 0 2129 125 54 25 chr1 255528035 255528388 -26665276 + THE1B LTR MaLR 1 363 -1 206 290 0 0 chr1 255528569 255528631 -26665033 - MIR SINE MIR -68 194 133 886 153 0 31 chr1 255528643 255528806 -26664858 - MLT1C LTR MaLR -309 158 1 488 214 77 0 chr1 255529417 255529534 -26664130 - MLT1A2 LTR MaLR -16 374 249 1162 104 0 0 chr1 255529535 255529689 -26663975 - AluSg/x SINE Alu -12 300 147 817 201 29 10 chr1 255529701 255529910 -26663754 - MLT1A2 LTR MaLR -144 230 18 2068 186 17 12 chr1 255529922 255530335 -26663329 - MLT1A2-int LTR MaLR -6 1729 1315 2035 226 29 11 chr1 255530596 255531122 -26662542 - MLT1A2-int LTR MaLR -487 884 260 697 131 25 0 chr1 255531106 255531228 -26662436 - MLT1A2-int LTR MaLR -1246 125 1 * 349 127 0 32 chr1 255531228 255531291 -26662373 - MLT2D LTR ERVL 0 414 354 1874 204 79 31 chr1 255531423 255531880 -26661784 - MLT2B1 LTR ERVL -41 479 1 293 278 199 13 chr1 255532287 255532438 -26661226 - MIR SINE MIR -70 192 14 571 149 37 60 chr1 255534521 255534655 -26659009 + FLAM_A SINE Alu 1 131 -2 21 0 0 0 chr1 255534655 255534676 -26658988 + AT_rich Low_complexity Low_complexity 1 21 0 383 323 64 11 chr1 255535904 255536170 -26657494 + MLT1J LTR MaLR 230 509 -2 461 248 99 28 chr1 255536275 255536416 -26657248 + L2 LINE L2 3161 3311 -2 1403 224 55 38 chr1 255536819 255537270 -26656394 + MLT1C LTR MaLR 9 467 0 492 238 45 50 chr1 255537368 255537570 -26656094 - L1MCc LINE L1 -6192 231 31 542 53 0 0 chr1 255537607 255537683 -26655981 + L1PA13 LINE L1 5276 5351 -812 6652 27 0 0 chr1 255537705 255538515 -26655149 - L1PA3 LINE L1 -4 6151 5342 4939 125 15 1 chr1 255538515 255539331 -26654333 + L1PA13 LINE L1 5337 6163 0 356 309 20 40 chr1 255539473 255539622 -26654042 - L3 LINE CR1 -1026 551 406 444 95 0 0 chr1 255539633 255539707 -26653957 - L1PB1 LINE L1 -3 6148 6075 213 288 50 25 chr1 255539815 255539895 -26653769 - L3 LINE CR1 -1207 370 289 1421 211 124 22 chr1 255542888 255543258 -26650406 - LTR26E LTR ERV1 0 622 215 201 318 63 32 chr1 255543415 255543541 -26650123 - MIR SINE MIR -108 154 25 326 343 43 19 chr1 255543664 255543871 -26649793 + L1ME LINE L1 5502 5713 -408 399 21 0 0 chr1 255545967 255546015 -26647649 + (TG)n Simple_repeat Simple_repeat 2 49 0 1921 148 46 38 chr1 255546706 255547078 -26646586 + THE1C LTR MaLR 1 375 0 474 155 124 0 chr1 255547081 255547210 -26646454 + L1MA7 LINE L1 6147 6291 0 29 47 0 0 chr1 255547623 255547666 -26645998 + AT_rich Low_complexity Low_complexity 1 43 0 2157 133 20 6 chr1 255547666 255548012 -26645652 - L1PB3 LINE L1 -2 6152 5802 663 201 6 28 chr1 255548048 255548227 -26645437 + L1P LINE L1 5168 5342 -804 649 72 0 10 chr1 255548693 255548790 -26644874 - L1MA2 LINE L1 0 6304 6209 345 149 0 0 chr1 255548867 255548934 -26644730 + (CA)n Simple_repeat Simple_repeat 2 68 0 2124 134 0 0 chr1 255549809 255550108 -26643556 - AluSx SINE Alu -13 299 1 288 0 0 0 chr1 255550966 255550998 -26642666 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2994 55 0 0 chr1 255551002 255551368 -26642296 - L1PA6 LINE L1 -13 6141 5776 3858 58 18 0 chr1 255551368 255552069 -26641595 + L1PA6 LINE L1 5065 5774 -380 1976 229 6 2 chr1 255552443 255552955 -26640709 + L1 LINE L1 4384 4897 -1249 1177 105 13 0 chr1 255552959 255553112 -26640552 - AluSq SINE Alu -158 155 1 1262 104 11 0 chr1 255554434 255554617 -26639047 + L1PA13 LINE L1 5974 6158 -5 500 306 21 16 chr1 255555666 255555852 -26637812 - MER5A DNA MER1_type -2 187 1 292 88 35 0 chr1 255556395 255556452 -26637212 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 741 288 20 54 chr1 255561928 255562223 -26631441 + L1MCc LINE L1 784 1068 -5355 1217 221 30 3 chr1 255562323 255562626 -26631038 + L1MCc LINE L1 1106 1416 -5007 1273 220 35 48 chr1 255562637 255562676 -26630988 - MLT1A2 LTR MaLR 0 467 429 2157 112 0 0 chr1 255562676 255562953 -26630711 + AluSc SINE Alu 1 277 -32 198 71 0 0 chr1 255562953 255562981 -26630683 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1273 220 35 48 chr1 255562981 255563315 -26630349 - MLT1A2 LTR MaLR -36 431 4 950 278 66 61 chr1 255563318 255564391 -26629273 + L1MCc LINE L1 1434 2719 -4403 195 42 0 0 chr1 255564403 255564427 -26629237 + (TTCCC)n Simple_repeat Simple_repeat 1 24 0 1564 249 42 28 chr1 255564611 255565068 -26628596 - LTR40c LTR ERVL -2 463 1 39 38 0 0 chr1 255565243 255565296 -26628368 + AT_rich Low_complexity Low_complexity 1 53 0 729 268 14 36 chr1 255565658 255565878 -26627786 - MIR SINE MIR -3 259 45 302 342 67 42 chr1 255566006 255566246 -26627418 + LTR16C LTR ERVL 68 313 -178 4022 163 4 10 chr1 255566278 255566964 -26626700 + MER54B LTR ERVL 1 682 -111 286 281 45 0 chr1 255567012 255567151 -26626513 + LTR16C LTR ERVL 312 491 0 1495 393 47 28 chr1 255567693 255568828 -26624836 + HERV16 LTR ERVL 2000 2960 -2036 378 362 5 5 chr1 255569299 255569509 -26624155 + HERV16 LTR ERVL 3750 3959 -1695 350 64 0 22 chr1 255569510 255569568 -26624096 + THE1C LTR MaLR 1 56 -299 243 130 74 0 chr1 255569569 255569623 -26624041 + L1M4c LINE L1 916 973 -5411 1595 142 62 32 chr1 255569625 255569963 -26623701 + THE1C LTR MaLR 28 375 0 1144 354 53 33 chr1 255570144 255570591 -26623073 + HERV16 LTR ERVL 4154 4628 -1026 2224 114 3 7 chr1 255570591 255570898 -26622766 + AluSx SINE Alu 1 306 -6 1144 354 53 33 chr1 255570898 255571306 -26622358 + HERV16 LTR ERVL 4628 5026 -628 627 332 34 7 chr1 255571927 255572222 -26621442 + LTR16C LTR ERVL 136 438 -53 1908 154 4 0 chr1 255572425 255572705 -26620959 - AluJb SINE Alu -31 281 1 2444 167 57 4 chr1 255572875 255573329 -26620335 + L1M4c LINE L1 19 496 -5888 * 7309 168 23 23 chr1 255573327 255574693 -26618971 + L1M4c LINE L1 892 2257 -4125 1538 214 3 16 chr1 255574693 255574996 -26618668 + AluJo SINE Alu 1 299 -13 7309 168 23 23 chr1 255574996 255575289 -26618375 + L1M4c LINE L1 2257 2549 -3833 448 125 88 125 chr1 255575289 255575368 -26618296 + MSTC LTR MaLR 1 74 -354 6246 98 8 12 chr1 255575368 255576674 -26616990 + L1PA11 LINE L1 4388 5684 -490 2198 120 0 3 chr1 255576674 255576975 -26616689 + AluSq SINE Alu 1 300 -13 6246 98 8 12 chr1 255576975 255577464 -26616200 + L1PA11 LINE L1 5684 6174 0 448 125 88 125 chr1 255577464 255577520 -26616144 + MSTC LTR MaLR 74 131 -297 714 171 66 0 chr1 255577520 255577672 -26615992 + L1MA6 LINE L1 6133 6294 -6 331 268 146 52 chr1 255577679 255577892 -26615772 + MLT1G LTR MaLR 160 392 -198 3303 138 53 40 chr1 255578016 255578237 -26615427 + L1MB3 LINE L1 5152 5369 -814 1959 156 120 28 chr1 255578237 255578629 -26615035 + MSTA LTR MaLR 1 428 0 3303 138 53 40 chr1 255578629 255578797 -26614867 + L1MB3 LINE L1 5369 5533 -650 1909 145 46 38 chr1 255578797 255579169 -26614495 - THE1C LTR MaLR 0 375 1 3303 138 53 40 chr1 255579169 255579547 -26614117 + L1MB3 LINE L1 5533 5924 -259 2251 114 0 0 chr1 255579552 255579842 -26613822 - AluSg SINE Alu -20 290 1 1113 161 23 0 chr1 255579963 255580181 -26613483 + L1MB3 LINE L1 5961 6183 0 1352 208 10 34 chr1 255581823 255582116 -26611548 + AluJo SINE Alu 3 288 -24 1889 114 0 0 chr1 255582129 255582375 -26611289 + AluSc SINE Alu 8 253 -56 221 280 13 13 chr1 255583103 255583178 -26610486 + (CATA)n Simple_repeat Simple_repeat 1 75 0 370 261 121 14 chr1 255583327 255583534 -26610130 - L1ME LINE L1 -320 5801 5573 1868 158 10 20 chr1 255583885 255584188 -26609476 + AluJo SINE Alu 1 300 -12 1102 162 13 77 chr1 255584278 255584512 -26609152 + MER20 DNA MER1_type 1 219 0 446 233 220 13 chr1 255585916 255586066 -26607598 + MER5A DNA MER1_type 9 189 0 962 189 37 37 chr1 255586872 255587089 -26606575 + MER20 DNA MER1_type 1 217 -2 292 331 25 6 chr1 255587141 255587301 -26606363 + LTR33 LTR ERVL 359 521 0 1399 101 0 0 chr1 255587608 255587796 -26605868 - AluSg/x SINE Alu -3 309 122 510 203 31 0 chr1 255587896 255588024 -26605640 + MER69 DNA AcHobo 579 710 -1816 261 254 15 30 chr1 255588036 255588103 -26605561 - MER91A DNA MER1_type -130 66 1 2144 111 14 7 chr1 255588455 255588752 -26604912 + AluSc SINE Alu 1 299 -10 1946 192 8 6 chr1 255590278 255590642 -26603022 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chr1 255591299 255591334 -26602330 + AT_rich Low_complexity Low_complexity 1 35 0 288 301 62 35 chr1 255591519 255591632 -26602032 - L2 LINE L2 -18 3295 3180 226 203 102 0 chr1 255591875 255591934 -26601730 - L1MA8 LINE L1 -215 6076 6012 206 278 14 42 chr1 255592173 255592245 -26601419 + L2 LINE L2 3180 3249 -64 2170 134 3 3 chr1 255593937 255594244 -26599420 + AluJb SINE Alu 1 307 -5 680 211 0 8 chr1 255594510 255594638 -26599026 + FLAM_A SINE Alu 1 127 -6 364 275 137 80 chr1 255595251 255595513 -26598151 - L3 LINE CR1 -878 699 423 248 321 113 0 chr1 255595800 255595906 -26597758 - L3 LINE CR1 -1189 388 271 502 235 34 0 chr1 255596375 255596494 -26597170 - L2 LINE L2 -2 3311 3189 463 340 34 79 chr1 255596542 255596898 -26596766 + L2 LINE L2 2931 3270 -2 199 241 54 80 chr1 255597539 255597651 -26596013 - MIR SINE MIR -51 211 103 353 254 84 58 chr1 255598399 255598674 -26594990 + L1ME3A LINE L1 857 1138 -5258 831 301 62 11 chr1 255598758 255599292 -26594372 + L1ME3A LINE L1 1257 1817 -4579 296 286 73 56 chr1 255599301 255599354 -26594310 + L1ME3A LINE L1 1869 1920 -4476 219 88 0 0 chr1 255599354 255599388 -26594276 + (ATTG)n Simple_repeat Simple_repeat 4 37 0 296 286 73 56 chr1 255599388 255599568 -26594096 + L1ME3A LINE L1 1920 2106 -4290 1562 259 79 70 chr1 255599623 255600302 -26593362 + L1ME3A LINE L1 5341 6031 -208 2958 68 3 0 chr1 255600302 255600682 -26592982 + L1PA5 LINE L1 5774 6154 0 1562 259 79 70 chr1 255600682 255600879 -26592785 + L1ME3A LINE L1 6031 6225 -14 379 210 0 0 chr1 255600915 255600996 -26592668 + L1ME LINE L1 5583 5663 -458 27 29 0 0 chr1 255601380 255601414 -26592250 + AT_rich Low_complexity Low_complexity 1 34 0 254 320 88 16 chr1 255602177 255602302 -26591362 - L2 LINE L2 0 3313 3180 2390 179 98 60 chr1 255602385 255603015 -26590649 - MLT1E1 LTR MaLR 0 654 1 2168 101 44 0 chr1 255603015 255603313 -26590351 + AluY SINE Alu 1 311 0 261 184 20 0 chr1 255603635 255603684 -26589980 - L2 LINE L2 -10 3303 3254 200 342 146 6 chr1 255603895 255604053 -26589611 + L2 LINE L2 2897 3076 -196 624 326 118 40 chr1 255604105 255604688 -26588976 - L2 LINE L2 -955 2359 1731 180 222 0 0 chr1 255604764 255604800 -26588864 - MIR3 SINE MIR -18 190 155 540 291 46 6 chr1 255604951 255605126 -26588538 + L2 LINE L2 3130 3311 -2 230 233 83 0 chr1 255605131 255605191 -26588473 - MIR SINE MIR -115 147 83 626 285 69 37 chr1 255605391 255605637 -26588027 - MIR SINE MIR -6 256 3 225 220 17 0 chr1 255605885 255605944 -26587720 + (TA)n Simple_repeat Simple_repeat 1 60 0 183 308 113 44 chr1 255606274 255606433 -26587231 + MIR3 SINE MIR 37 206 -2 489 311 41 69 chr1 255606504 255606893 -26586771 + L2 LINE L2 2252 2629 -685 817 166 22 0 chr1 255607018 255607199 -26586465 - L1 LINE L1 -757 5389 5205 * 906 234 35 28 chr1 255607198 255607484 -26586180 + L1MA9 LINE L1 5987 6274 -38 252 260 167 49 chr1 255607536 255607782 -26585882 - MLT1L LTR MaLR -121 494 220 2795 223 31 65 chr1 255607903 255608673 -26584991 + MER21B LTR ERV1 13 756 -107 555 258 104 25 chr1 255609378 255609541 -26584123 - MIR SINE MIR -3 259 84 1853 138 28 68 chr1 255610723 255610932 -26582732 - AluSq SINE Alu 0 313 120 1860 89 0 4 chr1 255610932 255611168 -26582496 + AluY SINE Alu 61 295 -16 1853 138 28 68 chr1 255611168 255611284 -26582380 - AluSq SINE Alu -193 120 1 190 304 174 11 chr1 255611736 255611828 -26581836 - MIR3 SINE MIR 0 208 102 340 321 40 76 chr1 255712616 255712893 -26480771 - L2 LINE L2 -11 3261 2995 340 271 5 18 chr1 255716844 255717293 -26476371 + (CA)n Simple_repeat Simple_repeat 1 442 0 1874 139 26 0 chr1 255717783 255718086 -26475578 - MSTA-int LTR MaLR -1340 311 1 1958 172 116 5 chr1 255718086 255718464 -26475200 - MSTA LTR MaLR 0 428 9 932 260 97 21 chr1 255718594 255719025 -26474639 - MLT1D LTR MaLR -19 486 23 234 289 39 19 chr1 255719734 255719838 -26473826 - L2 LINE L2 -6 3307 3202 2017 243 62 32 chr1 255719889 255720514 -26473150 + L2 LINE L2 2036 2679 -635 849 207 35 6 chr1 255722249 255722423 -26471241 - MER5A DNA MER1_type 0 189 11 22 35 0 0 chr1 255723475 255723504 -26470160 + AT_rich Low_complexity Low_complexity 1 29 0 464 306 100 33 chr1 255723643 255723944 -26469720 + HAL1 LINE L1 1134 1454 -1053 1146 79 0 0 chr1 255723976 255724116 -26469548 + AluY SINE Alu 157 296 -15 312 337 22 17 chr1 255724116 255724297 -26469367 + HAL1 LINE L1 1478 1659 -848 2108 123 3 0 chr1 255724599 255724883 -26468781 + AluSq SINE Alu 4 288 -25 186 43 0 0 chr1 255724886 255724909 -26468755 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr1 255725311 255725333 -26468331 + AT_rich Low_complexity Low_complexity 1 22 0 430 281 98 75 chr1 255726053 255726160 -26467504 - L1MC4a LINE L1 -1741 6067 5964 1590 170 6 64 chr1 255726160 255726490 -26467174 + AluJo SINE Alu 1 311 -1 430 281 98 75 chr1 255726490 255726717 -26466947 - L1MC4a LINE L1 -1844 5964 5725 21 36 0 0 chr1 255726965 255726993 -26466671 + AT_rich Low_complexity Low_complexity 1 28 0 291 287 17 43 chr1 255727031 255727146 -26466518 - L1MC4a LINE L1 -2282 5526 5415 397 218 0 0 chr1 255727159 255727237 -26466427 + MER58B DNA MER1_type 264 341 0 26 74 0 0 chr1 255729948 255730002 -26463662 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr1 255730558 255730582 -26463082 + AT_rich Low_complexity Low_complexity 1 24 0 1765 189 0 17 chr1 255731628 255731929 -26461735 + AluJb SINE Alu 1 296 -16 341 265 99 38 chr1 255732056 255732230 -26461434 - L1ME4a LINE L1 -223 5898 5710 23480 153 28 21 chr1 255733094 255739544 -26454120 - L1PA10 LINE L1 -3 6480 11 1717 178 44 36 chr1 255739592 255739952 -26453712 - MLT1A1 LTR MaLR 0 365 3 564 129 11 0 chr1 255740213 255740306 -26453358 + MSTD LTR MaLR 1 94 -302 385 252 61 9 chr1 255741122 255741237 -26452427 + L2 LINE L2 3193 3313 0 443 307 72 84 chr1 255742331 255742749 -26450915 - L2 LINE L2 -10 3262 2852 1400 194 18 21 chr1 255743648 255744035 -26449629 - Charlie5 DNA MER1_type 0 2623 2238 299 193 182 0 chr1 255744034 255744122 -26449542 - Charlie5 DNA MER1_type -2485 127 24 * 273 57 0 0 chr1 255746708 255746743 -26446921 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 333 68 0 0 chr1 255746926 255746970 -26446694 + (GGA)n Simple_repeat Simple_repeat 1 44 0 349 247 148 72 chr1 255747008 255747231 -26446433 - L1M2 LINE L1 -6158 691 452 337 291 67 118 chr1 255747378 255747914 -26445750 + L1M2 LINE L1 610 1118 -5731 230 308 133 21 chr1 255749806 255749949 -26443715 - L2 LINE L2 -6 3307 3149 207 245 94 0 chr1 255751290 255751343 -26442321 + L2 LINE L2 3177 3234 -38 1722 166 0 17 chr1 255751629 255751919 -26441745 + AluJb SINE Alu 12 296 -16 361 339 58 4 chr1 255752357 255752599 -26441065 - L1MEc LINE L1 -4638 1672 1418 313 237 77 84 chr1 255752635 255752909 -26440755 - L1MEc LINE L1 -4900 1219 948 384 122 40 14 chr1 255752909 255752983 -26440681 - L1MB1 LINE L1 0 6404 6329 21 0 0 0 chr1 255753021 255753042 -26440622 + AT_rich Low_complexity Low_complexity 1 21 0 1988 150 66 16 chr1 255753063 255753489 -26440175 - L1MA4 LINE L1 -7 6293 5847 3919 196 61 64 chr1 255753489 255755456 -26438208 - L1MB1 LINE L1 -82 6322 4350 2051 103 3 82 chr1 255755456 255755775 -26437889 - AluSx SINE Alu -18 294 1 3919 196 61 64 chr1 255755775 255755877 -26437787 - L1MB1 LINE L1 -2054 4350 4249 690 101 73 0 chr1 255755877 255755986 -26437678 - L1PA11 LINE L1 -1 6173 6057 13931 22 12 0 chr1 255755986 255758399 -26435265 - L1PA3 LINE L1 0 6155 3717 3919 196 61 64 chr1 255758399 255759002 -26434662 - L1MB1 LINE L1 -2153 4251 3654 1500 224 13 5 chr1 255759004 255759461 -26434203 - MLT2B1 LTR ERVL -8 507 2 1538 176 52 36 chr1 255759461 255759831 -26433833 - L1MB1 LINE L1 -2721 3661 3280 2101 135 3 0 chr1 255759831 255760127 -26433537 - AluSx SINE Alu -15 297 1 1538 176 52 36 chr1 255760127 255760233 -26433431 - L1MB1 LINE L1 -3102 3280 3177 * 1728 224 53 9 chr1 255760231 255760903 -26432761 - L1MB1 LINE L1 -3423 2959 2251 348 192 82 105 chr1 255760985 255761275 -26432389 - L1MEd LINE L1 -1378 1112 718 323 267 133 0 chr1 255761338 255761488 -26432176 - L1MEd LINE L1 -5418 701 532 216 130 87 0 chr1 255761582 255761628 -26432036 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 845 244 188 2 chr1 255761844 255762308 -26431356 + Charlie7 DNA MER1_type 1884 2433 -179 2072 156 15 32 chr1 255763133 255763536 -26430128 + MSTD LTR MaLR 1 396 0 233 382 36 0 chr1 255763794 255763904 -26429760 - L2 LINE L2 -56 3216 3103 1866 153 27 10 chr1 255764334 255764634 -26429030 - AluJb SINE Alu -7 305 1 1545 165 109 71 chr1 255764719 255765168 -26428496 + MER31B LTR ERV1 1 466 0 2218 100 10 7 chr1 255765585 255765894 -26427770 + AluSx SINE Alu 1 310 -2 2284 91 0 7 chr1 255766462 255766760 -26426904 - AluY SINE Alu -15 296 1 242 245 0 0 chr1 255766947 255767000 -26426664 + L2 LINE L2 3216 3268 -4 1878 120 7 58 chr1 255767352 255767660 -26426004 + AluSx SINE Alu 1 292 -20 26 0 0 0 chr1 255767660 255767686 -26425978 + AT_rich Low_complexity Low_complexity 1 26 0 973 261 27 23 chr1 255768031 255768291 -26425373 + MIR SINE MIR 2 262 0 370 234 208 26 chr1 255768608 255768762 -26424902 + MIR SINE MIR 4 185 -77 1744 178 0 4 chr1 255769253 255769534 -26424130 - AluJb SINE Alu -18 294 15 1596 254 117 20 chr1 255769732 255770322 -26423342 - MLT2F LTR ERVL -2 661 15 11473 242 76 31 chr1 255770542 255773219 -26420445 - ERVL-F LTR ERVL -252 5512 2652 1103 217 9 0 chr1 255773219 255773436 -26420228 + MER20 DNA MER1_type 1 219 0 11473 242 76 31 chr1 255773436 255774109 -26419555 - ERVL-F LTR ERVL -3112 2652 2011 1144 297 71 37 chr1 255774218 255774783 -26418881 - L2 LINE L2 -592 2722 2139 485 335 105 39 chr1 255774825 255775186 -26418478 + L1MEd LINE L1 60 444 -5675 189 0 0 0 chr1 255775380 255775401 -26418263 + (A)n Simple_repeat Simple_repeat 1 21 0 776 271 41 55 chr1 255775402 255775967 -26417697 + L1MEd LINE L1 701 1257 -4862 1865 143 56 0 chr1 255776187 255776474 -26417190 + AluSx SINE Alu 1 303 -9 1789 151 3 14 chr1 255776744 255777028 -26416636 + AluJb SINE Alu 3 283 -29 415 0 0 0 chr1 255777028 255777074 -26416590 + (TAA)n Simple_repeat Simple_repeat 2 180 0 506 294 191 21 chr1 255777300 255777783 -26415881 + L1MEd LINE L1 2130 2694 -3435 349 196 51 78 chr1 255777784 255778047 -26415617 + L1MEd LINE L1 2961 3209 -2920 1206 287 165 25 chr1 255778048 255778780 -26414884 - L2 LINE L2 -1159 2155 1321 368 128 0 128 chr1 255778781 255778821 -26414843 - Tigger7 DNA MER2_type 0 2587 2560 2167 128 33 28 chr1 255778821 255779181 -26414483 - THE1B LTR MaLR 0 364 3 368 128 0 128 chr1 255779181 255779218 -26414446 - Tigger7 DNA MER2_type -27 2560 2520 2702 210 18 4 chr1 255779230 255779745 -26413919 - Tigger7 DNA MER2_type -1965 522 1 711 320 39 12 chr1 255779761 255780095 -26413569 - L2 LINE L2 -2047 1267 925 1473 119 50 0 chr1 255780161 255780380 -26413284 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr1 255780760 255780781 -26412883 + AT_rich Low_complexity Low_complexity 1 21 0 1892 142 0 19 chr1 255781082 255781391 -26412273 + AluSx SINE Alu 1 303 -9 975 220 65 48 chr1 255781534 255781871 -26411793 + MER2 DNA MER2_type 2 344 0 188 182 0 0 chr1 255782226 255782259 -26411405 - MIR SINE MIR 0 262 230 522 314 110 38 chr1 255782287 255782577 -26411087 - L2 LINE L2 -1 3312 3002 * 571 251 35 29 chr1 255782555 255782726 -26410938 - MIR SINE MIR -84 178 7 376 372 82 9 chr1 255784860 255785091 -26408573 + MIR SINE MIR 15 262 0 183 350 58 19 chr1 255785681 255785784 -26407880 - MIR SINE MIR 0 262 156 678 263 69 42 chr1 255786026 255786288 -26407376 - L1MC4a LINE L1 -1936 5872 5604 399 243 154 18 chr1 255786580 255786749 -26406915 - MIR SINE MIR -31 231 40 233 231 147 28 chr1 255786749 255786892 -26406772 - L1M4 LINE L1 -3776 2370 2211 874 316 56 10 chr1 255787037 255787517 -26406147 - L2 LINE L2 -46 3267 2695 998 279 74 64 chr1 255787690 255788570 -26405094 - L1MC/D LINE L1 -759 5321 4815 24 53 0 0 chr1 255788978 255789016 -26404648 + AT_rich Low_complexity Low_complexity 1 38 0 237 232 36 18 chr1 255789115 255789171 -26404493 - L2 LINE L2 -228 3044 2988 2082 151 6 0 chr1 255790615 255790933 -26402731 - 7SLRNA srpRNA srpRNA 0 320 1 310 165 52 87 chr1 255791092 255791129 -26402535 - L1M4 LINE L1 -3519 2627 2590 2250 107 0 3 chr1 255791129 255791438 -26402226 - AluSp SINE Alu -3 310 3 310 165 52 87 chr1 255791438 255791515 -26402149 - L1M4 LINE L1 -3556 2590 2517 * 1399 271 122 32 chr1 255791501 255792017 -26401647 - L1MC/D LINE L1 -4454 1807 1339 270 56 0 0 chr1 255792017 255792053 -26401611 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1399 271 122 32 chr1 255792053 255792212 -26401452 - L1MC/D LINE L1 -4922 1339 1196 2227 89 0 0 chr1 255792212 255792520 -26401144 - AluY SINE Alu 0 308 1 1399 271 122 32 chr1 255792520 255792665 -26400999 - L1MC/D LINE L1 -5065 1196 911 294 162 68 60 chr1 255792665 255792782 -26400882 + (TAGTG)n Simple_repeat Simple_repeat 4 121 0 1416 308 33 47 chr1 255792782 255793655 -26400009 - L1MC/D LINE L1 -5204 866 6 194 300 171 0 chr1 255794777 255794847 -26398817 - L2 LINE L2 -35 3278 3197 899 142 26 0 chr1 255794899 255795225 -26398439 + CT-rich Low_complexity Low_complexity 1 334 0 647 284 79 26 chr1 255795359 255795730 -26397934 - MLT1H LTR MaLR -14 541 51 1632 168 53 3 chr1 255796182 255796300 -26397364 + AluJb SINE Alu 1 112 -200 207 0 0 0 chr1 255796300 255796323 -26397341 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1632 168 53 3 chr1 255796323 255796489 -26397175 + AluJb SINE Alu 112 299 -13 1107 203 0 0 chr1 255796699 255796886 -26396778 - MER5A DNA MER1_type -2 187 1 287 380 36 7 chr1 255796887 255797024 -26396640 - L2 LINE L2 -20 3252 3112 2024 123 3 10 chr1 255798050 255798350 -26395314 - AluSx SINE Alu -14 298 1 22 0 0 0 chr1 255798509 255798531 -26395133 + AT_rich Low_complexity Low_complexity 1 22 0 201 269 30 0 chr1 255799240 255799307 -26394357 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 1751 161 28 3 chr1 255799406 255799697 -26393967 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr1 255799704 255799725 -26393939 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 255800325 255800355 -26393309 + AT_rich Low_complexity Low_complexity 1 30 0 236 392 74 17 chr1 255801549 255801725 -26391939 - MER91A DNA MER1_type -10 186 1 2055 92 3 64 chr1 255802856 255803170 -26390494 - AluSc SINE Alu -14 295 1 258 105 0 0 chr1 255805179 255805217 -26388447 + (CA)n Simple_repeat Simple_repeat 2 39 0 231 338 80 22 chr1 255805428 255805653 -26388011 + L2 LINE L2 2841 3078 -194 432 97 0 0 chr1 255806457 255806519 -26387145 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 * 438 94 0 0 chr1 255806505 255806569 -26387095 + (TC)n Simple_repeat Simple_repeat 2 65 0 2332 86 3 3 chr1 255806572 255806874 -26386790 - AluSq SINE Alu -11 302 1 253 253 0 24 chr1 255806876 255806959 -26386705 - L1ME LINE L1 -335 5827 5747 965 266 55 13 chr1 255807055 255807417 -26386247 - L1ME LINE L1 -468 5702 5331 1290 168 180 15 chr1 255809486 255809819 -26383845 - MLT1B LTR MaLR -2 388 1 24 0 0 0 chr1 255810942 255810966 -26382698 + AT_rich Low_complexity Low_complexity 1 24 0 2246 249 77 9 chr1 255811272 255811416 -26382248 + MLT1E LTR MaLR 8 141 -452 543 31 0 0 chr1 255811416 255811481 -26382183 + (TTATA)n Simple_repeat Simple_repeat 2 66 0 2246 249 77 9 chr1 255811481 255811885 -26381779 + MLT1E LTR MaLR 141 593 0 21 57 0 0 chr1 255812443 255812478 -26381186 + AT_rich Low_complexity Low_complexity 1 35 0 530 240 0 0 chr1 255813285 255813385 -26380279 + HERVL40 LTR ERVL 3884 3983 -1547 5242 145 40 9 chr1 255813385 255814291 -26379373 + L1MC1 LINE L1 5298 6231 -102 1509 151 87 20 chr1 255814392 255814691 -26378973 + L1MC1 LINE L1 6009 6327 -6 199 68 0 68 chr1 255814696 255814740 -26378924 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 340 268 49 0 chr1 255814740 255814822 -26378842 + HERVL40 LTR ERVL 3974 4059 -1471 * 904 222 47 24 chr1 255814820 255815032 -26378632 - HERVL40 LTR ERVL -2777 2753 2537 655 340 132 12 chr1 255815032 255815843 -26377821 - L2 LINE L2 -412 2902 1995 21 0 0 0 chr1 255816020 255816041 -26377623 + AT_rich Low_complexity Low_complexity 1 21 0 4590 135 23 43 chr1 255816198 255817057 -26376607 - L1MB3 LINE L1 0 6183 5342 227 260 135 19 chr1 255817599 255817703 -26375961 - MIR3 SINE MIR -39 169 54 266 0 29 0 chr1 255817897 255817931 -26375733 + (TA)n Simple_repeat Simple_repeat 1 35 0 1752 142 55 0 chr1 255818224 255818499 -26375165 + AluJb SINE Alu 1 290 -22 2178 74 0 77 chr1 255820394 255820730 -26372934 - AluY SINE Alu -1 310 1 681 239 31 0 chr1 255821834 255821993 -26371671 - L2 LINE L2 -1 3312 3149 22 0 0 0 chr1 255822317 255822339 -26371325 + AT_rich Low_complexity Low_complexity 1 22 0 622 228 129 65 chr1 255822398 255822630 -26371034 - MIR SINE MIR -13 249 3 22 0 0 0 chr1 255822733 255822755 -26370909 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 255823971 255823992 -26369672 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 255824041 255824062 -26369602 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr1 255824216 255824265 -26369399 + AT_rich Low_complexity Low_complexity 1 49 0 268 253 53 94 chr1 255824523 255824693 -26368971 - MER103 DNA DNA -1 165 3 302 0 26 0 chr1 255824988 255825026 -26368638 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 25238 78 7 12 chr1 255825028 255831202 -26362462 - L1PA6 LINE L1 -1 6153 11 2310 91 0 0 chr1 255831220 255831544 -26362120 - AluSx SINE Alu 0 324 1 23 68 0 0 chr1 255831982 255832026 -26361638 + AT_rich Low_complexity Low_complexity 1 44 0 1767 155 0 14 chr1 255833488 255833810 -26359854 - AluJo SINE Alu 0 331 14 245 173 0 77 chr1 255833899 255833951 -26359713 + L2 LINE L2 3003 3050 -222 393 241 66 58 chr1 255834135 255834272 -26359392 + L2 LINE L2 3176 3313 0 34 55 0 0 chr1 255835522 255835577 -26358087 + AT_rich Low_complexity Low_complexity 1 55 0 181 263 140 0 chr1 255835633 255835690 -26357974 - MIR SINE MIR -74 188 124 21 36 0 0 chr1 255838264 255838292 -26355372 + AT_rich Low_complexity Low_complexity 1 28 0 2380 92 0 0 chr1 255838680 255838984 -26354680 + AluY SINE Alu 1 304 -7 482 213 154 29 chr1 255840612 255840864 -26352800 - L1ME1 LINE L1 -285 5881 5606 24 0 0 0 chr1 255841127 255841151 -26352513 + AT_rich Low_complexity Low_complexity 1 24 0 1737 160 44 3 chr1 255842103 255842396 -26351268 + AluJb SINE Alu 1 305 -7 2230 101 0 0 chr1 255843516 255843802 -26349862 + AluSx SINE Alu 13 298 -14 2132 111 7 3 chr1 255843804 255844102 -26349562 + AluSx SINE Alu 1 299 -13 198 425 12 0 chr1 255844637 255844717 -26348947 - L2 LINE L2 -86 3186 3106 428 306 38 25 chr1 255844802 255844962 -26348702 - L2 LINE L2 0 3313 3152 212 291 55 0 chr1 255845087 255845142 -26348522 + L2 LINE L2 1369 1426 -1888 1958 140 14 0 chr1 255846028 255846321 -26347343 + AluSx SINE Alu 1 297 -15 484 310 168 35 chr1 255847675 255848239 -26345425 + L2 LINE L2 1615 2253 -1061 912 141 39 0 chr1 255848291 255848419 -26345245 + FLAM_C SINE Alu 1 133 0 916 173 54 5 chr1 255848865 255849050 -26344614 - L1MB1 LINE L1 -8 6160 5967 4547 150 28 19 chr1 255849050 255849884 -26343780 - L1MB1 LINE L1 -120 6048 5205 2433 177 36 5 chr1 255852342 255852755 -26340909 - MSTB LTR MaLR 0 426 1 252 314 114 9 chr1 255852932 255853037 -26340627 - L2 LINE L2 -7 3265 3150 348 262 128 13 chr1 255853284 255853433 -26340231 - L2 LINE L2 -924 2390 2225 424 212 0 0 chr1 255853461 255853546 -26340118 - MIR SINE MIR -32 230 146 595 280 50 67 chr1 255853826 255854065 -26339599 + MIR SINE MIR 13 247 -15 201 213 0 0 chr1 255854358 255854405 -26339259 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 479 258 65 32 chr1 255854452 255854607 -26339057 + MIR SINE MIR 103 262 0 1204 174 43 16 chr1 255857180 255857387 -26336277 + MLT1A1 LTR MaLR 1 254 -111 7855 130 55 20 chr1 255857387 255858622 -26335042 + MER52C LTR ERV1 1 1278 0 1204 174 43 16 chr1 255858622 255858738 -26334926 + MLT1A1 LTR MaLR 254 365 0 247 328 41 12 chr1 255858814 255858985 -26334679 - L1MC4a LINE L1 -1880 5928 5753 366 291 97 0 chr1 255859146 255859352 -26334312 - L1MC4a LINE L1 -662 5500 5275 392 265 135 41 chr1 255859374 255859859 -26333805 - L1M LINE L1 -804 5358 4828 280 303 92 23 chr1 255859941 255860159 -26333505 + L1M4 LINE L1 3253 3485 -2661 6483 66 8 37 chr1 255860258 255862099 -26331565 - SVA Other Other -799 1382 32 6657 82 32 1 chr1 255862368 255863419 -26330245 + L1PA10 LINE L1 5071 6151 -17 391 242 117 17 chr1 255863937 255864057 -26329607 + L2 LINE L2 3182 3313 0 312 285 90 28 chr1 255864113 255864257 -26329407 + MIR SINE MIR 31 183 -79 299 325 51 0 chr1 255865817 255865934 -26327730 + L2 LINE L2 3150 3272 0 470 261 25 25 chr1 255866337 255866456 -26327208 - MIR3 SINE MIR -2 206 88 262 307 143 14 chr1 255867054 255867194 -26326470 - MER5B DNA MER1_type 0 178 21 526 183 412 0 chr1 255867526 255867679 -26325985 - MER20 DNA MER1_type 0 219 4 292 234 23 78 chr1 255868869 255868997 -26324667 - L1ME4a LINE L1 -50 6071 5951 877 341 49 13 chr1 255869429 255869881 -26323783 + L2 LINE L2 2292 2759 -555 386 289 60 60 chr1 255870201 255870367 -26323297 + L2 LINE L2 3107 3272 0 234 326 126 11 chr1 255870534 255870629 -26323035 + MIR SINE MIR 21 126 -136 2011 129 0 3 chr1 255870739 255871025 -26322639 - AluSx SINE Alu -19 293 9 367 313 0 0 chr1 255871033 255871145 -26322519 + MIR SINE MIR 150 261 -1 25 0 0 0 chr1 255872016 255872041 -26321623 + AT_rich Low_complexity Low_complexity 1 25 0 668 279 127 54 chr1 255872501 255872910 -26320754 + MLT1J LTR MaLR 35 473 -38 2279 205 98 24 chr1 255872977 255873528 -26320136 + MLT1E LTR MaLR 1 592 -1 180 0 0 0 chr1 255873930 255873950 -26319714 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 315 0 0 0 chr1 255873949 255873984 -26319680 + (CA)n Simple_repeat Simple_repeat 1 35 0 231 36 0 0 chr1 255873983 255874011 -26319653 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 525 326 13 30 chr1 255874646 255874879 -26318785 + LTR16C LTR ERVL 252 480 -11 372 344 122 36 chr1 255874889 255875299 -26318365 + L2 LINE L2 565 1049 -2265 1877 160 0 13 chr1 255875299 255875599 -26318065 - AluJo SINE Alu -14 298 3 372 344 122 36 chr1 255875599 255875819 -26317845 + L2 LINE L2 1049 1249 -2065 303 319 0 50 chr1 255875898 255876017 -26317647 - L2 LINE L2 -6 3307 3195 2007 168 95 13 chr1 255876871 255877251 -26316413 - MSTB LTR MaLR 0 426 16 2131 109 6 37 chr1 255877305 255877626 -26316038 - AluSx SINE Alu -1 311 1 494 345 6 6 chr1 255878521 255878689 -26314975 + L2 LINE L2 3146 3313 0 2022 110 7 0 chr1 255880141 255880451 -26313213 - AluSx SINE Alu 0 312 1 1296 220 62 39 chr1 255881108 255881625 -26312039 + MLT1E LTR MaLR 1 593 0 576 265 40 0 chr1 255882052 255882203 -26311461 - MIR SINE MIR -8 254 98 211 254 48 48 chr1 255882391 255882454 -26311210 + MER5A DNA MER1_type 95 157 -32 2496 152 34 0 chr1 255882652 255883066 -26310598 + MSTA LTR MaLR 1 428 0 1158 141 0 11 chr1 255884358 255884535 -26309129 - AluJb SINE Alu -13 299 125 280 282 18 55 chr1 255885923 255886033 -26307631 - L2 LINE L2 -181 3091 2986 212 291 101 0 chr1 255886029 255886108 -26307556 + MIR3 SINE MIR 13 99 -109 * 212 324 92 78 chr1 255886540 255886824 -26306840 - L2 LINE L2 -5 3267 2980 2022 152 3 0 chr1 255886989 255887292 -26306372 - AluSx SINE Alu -8 304 1 206 338 12 38 chr1 255887366 255887446 -26306218 - L3 LINE CR1 -22 1555 1478 761 241 125 13 chr1 255887538 255887762 -26305902 + MIR SINE MIR 1 249 -13 248 111 22 0 chr1 255887768 255887813 -26305851 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 1326 132 5 0 chr1 255888280 255888470 -26305194 + AluSp SINE Alu 104 294 -19 1500 197 62 3 chr1 255888690 255889015 -26304649 - MER2 DNA MER2_type 0 344 1 21 0 0 0 chr1 255889902 255889923 -26303741 + AT_rich Low_complexity Low_complexity 1 21 0 266 258 93 93 chr1 255890069 255890220 -26303444 + L2 LINE L2 2251 2401 -913 324 292 0 0 chr1 255891061 255891150 -26302514 + L2 LINE L2 3183 3271 -1 213 326 11 56 chr1 255892264 255892353 -26301311 - L2 LINE L2 -81 3191 3107 286 261 96 64 chr1 255893195 255893247 -26300417 - MIR SINE MIR -14 248 199 861 201 29 6 chr1 255893247 255893421 -26300243 + MER45A DNA AcHobo 1 178 0 286 261 96 64 chr1 255893421 255893525 -26300139 - MIR SINE MIR -63 199 87 310 318 152 13 chr1 255893617 255893768 -26299896 + MER5A DNA MER1_type 15 186 -3 300 262 43 30 chr1 255893779 255893882 -26299782 + MER112 DNA MER1_type 1 108 -152 2248 109 0 0 chr1 255893882 255894176 -26299488 + AluSx SINE Alu 1 294 -18 300 262 43 30 chr1 255894176 255894236 -26299428 + MER112 DNA MER1_type 108 166 -94 1991 121 7 7 chr1 255894553 255894835 -26298829 - AluSx SINE Alu -30 282 1 248 283 100 33 chr1 255895614 255895734 -26297930 + MER5C DNA MER1_type 1 128 -196 675 202 82 19 chr1 255895806 255896014 -26297650 + MER5C DNA MER1_type 101 321 -3 275 164 82 55 chr1 255896302 255896375 -26297289 - MIR SINE MIR -93 169 95 365 386 43 5 chr1 255897041 255897225 -26296439 + L2 LINE L2 2865 3055 -217 198 247 164 0 chr1 255897497 255897570 -26296094 + MIR SINE MIR 163 247 -15 14685 126 27 12 chr1 255897790 255900172 -26293492 + Tigger1 DNA MER2_type 1 2418 0 252 367 0 7 chr1 255901276 255901426 -26292238 + A-rich Low_complexity Low_complexity 4 152 0 * 291 340 18 31 chr1 255901317 255901544 -26292120 + GA-rich Low_complexity Low_complexity 1 223 0 243 277 21 11 chr1 255901570 255901664 -26292000 + A-rich Low_complexity Low_complexity 5 99 0 426 254 0 8 chr1 255901739 255901869 -26291795 + AluSg/x SINE Alu 171 299 -11 2171 73 0 7 chr1 255902993 255903268 -26290396 - AluY SINE Alu -3 308 36 402 300 90 52 chr1 255903474 255903615 -26290049 + L1 LINE L1 3694 3828 -2318 1964 142 7 3 chr1 255903615 255903911 -26289753 - AluSx SINE Alu -13 299 3 402 300 90 52 chr1 255903911 255904261 -26289403 + L1 LINE L1 3828 4215 -1931 3053 148 26 6 chr1 255904261 255904802 -26288862 - L1MA4A LINE L1 -4 6299 5748 402 300 90 52 chr1 255904802 255904919 -26288745 + L1 LINE L1 4215 4326 -1820 24 77 0 0 chr1 255904975 255905027 -26288637 + AT_rich Low_complexity Low_complexity 1 52 0 260 197 0 66 chr1 255905046 255905122 -26288542 + L1MEd LINE L1 1266 1445 -4927 1775 163 38 0 chr1 255905123 255905443 -26288221 + MER7A DNA MER2_type 1 330 -16 316 203 0 0 chr1 255905461 255905530 -26288134 + L1MEd LINE L1 1484 1552 -5011 818 266 54 12 chr1 255905965 255906206 -26287458 + MIR SINE MIR 12 262 0 4183 143 23 47 chr1 255906677 255908083 -26285581 - pTR5 LTR ERV1 0 2438 743 2291 103 0 10 chr1 255910100 255910411 -26283253 + AluSg SINE Alu 1 308 -2 607 126 0 0 chr1 255910803 255910898 -26282766 - L1MA3 LINE L1 0 6305 6211 1967 119 12 12 chr1 255910970 255911297 -26282367 - L1MA3 LINE L1 -92 6213 5887 246 128 0 0 chr1 255911438 255911477 -26282187 + (T)n Simple_repeat Simple_repeat 1 39 0 770 204 27 84 chr1 255912282 255912393 -26281271 - MIR SINE MIR 0 262 169 2190 117 0 0 chr1 255912393 255912683 -26280981 - AluSg SINE Alu -20 290 1 770 204 27 84 chr1 255912683 255912796 -26280868 - MIR SINE MIR -93 169 51 900 210 105 18 chr1 255913294 255913523 -26280141 + MIR SINE MIR 14 262 0 281 356 34 68 chr1 255913628 255913720 -26279944 + MIR3 SINE MIR 11 96 -112 2158 106 11 0 chr1 255913720 255914002 -26279662 - AluSg SINE Alu -14 296 12 281 356 34 68 chr1 255914002 255914086 -26279578 + MIR3 SINE MIR 96 181 -27 1351 291 98 8 chr1 255914691 255915242 -26278422 - L2 LINE L2 0 3313 2711 22 56 0 0 chr1 255916565 255916601 -26277063 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 255918361 255918382 -26275282 + AT_rich Low_complexity Low_complexity 1 21 0 2789 7 0 0 chr1 255919168 255919472 -26274192 + AluYa5 SINE Alu 1 304 -7 2016 135 4 0 chr1 255919757 255920038 -26273626 + AluJb SINE Alu 1 282 -30 316 270 45 0 chr1 255920153 255920242 -26273422 + L1MEc LINE L1 201 293 -6270 2598 237 136 47 chr1 255920270 255920821 -26272843 + L1MEc LINE L1 289 790 -5773 2450 82 7 0 chr1 255920821 255921126 -26272538 + AluSx SINE Alu 2 308 -4 1495 86 0 0 chr1 255921126 255921313 -26272351 + AluSp SINE Alu 126 312 -1 2598 237 136 47 chr1 255921313 255921601 -26272063 + L1MEc LINE L1 790 1051 -5512 2145 100 24 0 chr1 255921601 255921728 -26271936 + AluY SINE Alu 1 123 -188 198 0 0 0 chr1 255921728 255921750 -26271914 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2145 100 24 0 chr1 255921750 255921913 -26271751 + AluY SINE Alu 123 298 -13 2598 237 136 47 chr1 255921913 255922845 -26270819 + L1MEc LINE L1 1051 2306 -4257 5606 124 25 18 chr1 255922852 255923941 -26269723 + L1MA8 LINE L1 5142 6241 -50 1872 171 3 7 chr1 255923941 255924246 -26269418 + AluJb SINE Alu 1 304 -8 5606 124 25 18 chr1 255924246 255924294 -26269370 + L1MA8 LINE L1 6241 6287 -4 881 173 24 23 chr1 255924312 255924590 -26269074 + L1MEc LINE L1 2258 2564 -3884 2188 128 0 3 chr1 255925193 255925498 -26268166 - AluSc SINE Alu -5 304 1 180 224 135 83 chr1 255926883 255927039 -26266625 - L3 LINE CR1 -1230 347 184 542 203 40 34 chr1 256027246 256027394 -26166270 - L1ME3 LINE L1 -2 6160 6012 300 27 0 0 chr1 256027400 256027437 -26166227 + (TC)n Simple_repeat Simple_repeat 1 37 0 516 32 0 0 chr1 256027592 256027654 -26166010 + (CA)n Simple_repeat Simple_repeat 2 63 0 1011 177 23 42 chr1 256027672 256027932 -26165732 - L1ME3 LINE L1 -200 5964 5710 584 222 114 46 chr1 256027943 256028193 -26165471 - L1ME3 LINE L1 -1676 4470 4188 1520 53 0 5 chr1 256028193 256028380 -26165284 - AluY SINE Alu -5 306 121 584 222 114 46 chr1 256028380 256028480 -26165184 - L1ME3 LINE L1 -1958 4188 4096 2103 199 92 36 chr1 256029533 256030055 -26163609 - MER74A LTR ERVL 0 558 8 8702 36 6 0 chr1 256030070 256031923 -26161741 - L1PA5 LINE L1 -34 6120 4255 983 284 87 47 chr1 256032030 256032561 -26161103 - MLT1K LTR MaLR -10 578 27 25 0 0 0 chr1 256032857 256032882 -26160782 + AT_rich Low_complexity Low_complexity 1 25 0 1155 171 11 0 chr1 256033358 256033545 -26160119 - MER5A DNA MER1_type 0 189 1 2383 142 100 2 chr1 256035048 256035479 -26158185 - L1MA7 LINE L1 0 6291 5819 418 271 402 8 chr1 256035542 256035808 -26157856 + L2 LINE L2 2943 3313 0 210 250 12 75 chr1 256036011 256036091 -26157573 + L2 LINE L2 3180 3254 -18 203 237 166 79 chr1 256038343 256038482 -26155182 + MER5B DNA MER1_type 1 151 -27 383 322 50 47 chr1 256038744 256039039 -26154625 + L3 LINE CR1 960 1258 -319 2016 154 6 3 chr1 256039039 256039350 -26154314 + AluSx SINE Alu 1 312 0 383 322 50 47 chr1 256039350 256039414 -26154250 + L3 LINE CR1 1258 1320 -257 363 287 52 0 chr1 256039431 256039546 -26154118 - MIR SINE MIR -38 224 104 741 233 0 0 chr1 256039546 256039675 -26153989 + FLAM_A SINE Alu 1 129 -4 21 0 0 0 chr1 256039675 256039696 -26153968 + AT_rich Low_complexity Low_complexity 1 21 0 542 246 107 67 chr1 256039851 256040250 -26153414 + LTR16A1 LTR ERVL 1 443 -14 1296 161 99 8 chr1 256040359 256040601 -26153063 - MSTB LTR MaLR -162 264 1 856 241 62 9 chr1 256041009 256041233 -26152431 + LTR16A LTR ERVL 1 236 -214 * 1439 233 143 43 chr1 256041214 256041724 -26151940 + MLT1E LTR MaLR 33 593 0 676 281 0 50 chr1 256041724 256041942 -26151722 + LTR16A LTR ERVL 239 445 -5 12544 31 0 0 chr1 256042439 256044611 -26149053 + L1PA3 LINE L1 3983 6153 -2 628 238 83 0 chr1 256044820 256045001 -26148663 + L2 LINE L2 3118 3313 0 645 277 7 6 chr1 256045166 256045352 -26148312 - MIR SINE MIR -65 143 4 441 272 18 9 chr1 256045434 256045548 -26148116 + L2 LINE L2 3194 3308 -5 234 286 143 0 chr1 256045555 256045625 -26148039 - L2 LINE L2 -48 3224 3145 770 203 93 89 chr1 256045663 256045899 -26147765 - MIR SINE MIR -1 261 25 189 191 24 0 chr1 256047595 256047637 -26146027 - MIR3 SINE MIR -154 54 12 248 186 17 0 chr1 256047771 256047830 -26145834 + (CA)n Simple_repeat Simple_repeat 1 60 0 334 313 31 0 chr1 256048453 256048581 -26145083 + MIR SINE MIR 131 262 0 276 192 19 0 chr1 256049056 256049108 -26144556 + MER105 DNA DNA 3 55 -149 830 142 55 142 chr1 256049470 256049688 -26143976 + MER105 DNA DNA 3 201 -3 333 286 63 16 chr1 256049692 256049818 -26143846 - MIR SINE MIR -109 153 22 330 222 25 0 chr1 256049884 256049965 -26143699 - MIR3 SINE MIR -3 205 123 604 187 13 73 chr1 256050145 256050295 -26143369 + MIR3 SINE MIR 53 193 -15 2808 176 55 17 chr1 256050654 256051131 -26142533 - LTR42 LTR ERVL 0 495 1 30 77 0 0 chr1 256051423 256051488 -26142176 + AT_rich Low_complexity Low_complexity 1 65 0 200 170 0 38 chr1 256051881 256051934 -26141730 + (TA)n Simple_repeat Simple_repeat 2 52 0 189 267 0 0 chr1 256052224 256052269 -26141395 - MIR SINE MIR -114 148 104 537 270 75 0 chr1 256052838 256052997 -26140667 + MER117 DNA MER1_type 27 197 0 797 210 96 0 chr1 256053075 256053294 -26140370 - Charlie2 DNA MER1_type -6 2856 2617 706 95 42 0 chr1 256053827 256053922 -26139742 - L1PA8 LINE L1 -6 6166 6068 14149 68 14 1 chr1 256053924 256055800 -26137864 + L1P LINE L1 2086 3987 -2159 20619 68 10 0 chr1 256055905 256058595 -26135069 + L1P LINE L1 2559 5276 -870 846 185 0 0 chr1 256058789 256058919 -26134745 + FLAM_C SINE Alu 1 130 -3 728 44 0 0 chr1 256059216 256059306 -26134358 - L1PA7 LINE L1 0 6154 6065 2376 85 0 10 chr1 256059399 256059706 -26133958 + AluSc SINE Alu 1 304 -5 194 287 69 81 chr1 256059874 256059961 -26133703 - L2 LINE L2 -18 3295 3210 2543 179 8 18 chr1 256060356 256060853 -26132811 - L1MA9 LINE L1 -38 6274 5783 1064 227 18 14 chr1 256060829 256061106 -26132558 + L1 LINE L1 4608 4885 -1261 * 317 297 79 30 chr1 256061303 256061404 -26132260 - L2 LINE L2 0 3272 3167 383 285 79 114 chr1 256061500 256061868 -26131796 + MLT1I LTR MaLR 55 409 0 198 0 0 0 chr1 256062620 256062642 -26131022 + (T)n Simple_repeat Simple_repeat 1 22 0 243 336 0 90 chr1 256063851 256063985 -26129679 + L3 LINE CR1 1384 1505 -72 1664 259 135 61 chr1 256065030 256065717 -26127947 - MER21B LTR ERV1 -125 738 1 433 235 20 0 chr1 256065996 256066094 -26127570 - MIR SINE MIR 0 262 163 283 189 40 14 chr1 256066095 256066169 -26127495 - L1MC/D LINE L1 -2037 5771 5696 192 275 72 65 chr1 256066891 256067029 -26126635 - MIR3 SINE MIR -62 146 8 483 273 38 34 chr1 256067573 256067779 -26125885 + MIR3 SINE MIR 4 205 -17 195 42 0 0 chr1 256067824 256067848 -26125816 + (ATG)n Simple_repeat Simple_repeat 1 24 0 180 111 0 0 chr1 256069037 256069064 -26124600 + (A)n Simple_repeat Simple_repeat 1 27 0 490 323 32 51 chr1 256070018 256070267 -26123397 - MIR SINE MIR -12 250 1 25 31 0 0 chr1 256070843 256070875 -26122789 + AT_rich Low_complexity Low_complexity 1 32 0 282 321 69 8 chr1 256071050 256071181 -26122483 + L2 LINE L2 2950 3088 -184 3762 123 6 4 chr1 256071371 256071890 -26121774 + MER1A DNA MER1_type 1 520 -9 218 100 0 0 chr1 256072089 256072119 -26121545 + (T)n Simple_repeat Simple_repeat 1 30 0 1439 194 63 83 chr1 256072589 256072986 -26120678 - MLT1B LTR MaLR -1 389 1 280 266 81 32 chr1 256073314 256073438 -26120226 - L3 LINE CR1 -5 1572 1443 201 74 0 0 chr1 256073786 256073813 -26119851 + (CA)n Simple_repeat Simple_repeat 2 28 0 366 321 0 9 chr1 256074686 256074795 -26118869 - MIR SINE MIR -63 145 38 5798 200 24 59 chr1 256074795 256076241 -26117423 + L1PB3 LINE L1 1774 3269 -2877 2144 130 0 0 chr1 256076241 256076533 -26117131 + AluSx SINE Alu 3 294 -18 5798 200 24 59 chr1 256076533 256076738 -26116926 + L1PB3 LINE L1 3269 3366 -2780 1974 158 0 10 chr1 256076738 256077048 -26116616 + AluSg SINE Alu 4 310 0 5798 200 24 59 chr1 256077048 256077228 -26116436 + L1PB3 LINE L1 3366 3551 -2595 4529 141 22 10 chr1 256077227 256078522 -26115142 + L1PB3 LINE L1 4479 5799 -355 * 288 0 0 0 chr1 256078522 256078554 -26115110 + (TA)n Simple_repeat Simple_repeat 1 32 0 4529 141 22 10 chr1 256078554 256078675 -26114989 + L1PB3 LINE L1 5799 5917 -237 1280 135 52 26 chr1 256078694 256078852 -26114812 + AluSx SINE Alu 60 227 -85 2148 148 26 32 chr1 256078852 256079229 -26114435 - THE1C LTR MaLR 0 375 1 1280 135 52 26 chr1 256079229 256079299 -26114365 + AluSx SINE Alu 227 294 -18 830 157 74 42 chr1 256079519 256079736 -26113928 - MER33 DNA MER1_type 0 324 101 386 215 7 4 chr1 256079729 256079826 -26113838 - MER33 DNA MER1_type -259 65 1 * 1594 203 0 3 chr1 256080127 256080417 -26113247 + AluJb SINE Alu 1 289 -23 2519 62 0 10 chr1 256080426 256080734 -26112930 + AluY SINE Alu 1 305 -6 1749 180 3 58 chr1 256082534 256082896 -26110768 - MLT1A1 LTR MaLR 0 365 24 1322 233 9 69 chr1 256084084 256084505 -26109159 - MLT2C1 LTR ERVL 0 397 2 249 300 191 0 chr1 256084518 256084628 -26109036 - MIR SINE MIR 0 262 132 1685 174 6 44 chr1 256084692 256085008 -26108656 - AluJb SINE Alu -8 304 1 712 205 24 73 chr1 256085231 256085436 -26108228 - MER20 DNA MER1_type 0 219 25 2162 94 0 18 chr1 256085893 256086199 -26107465 + AluSx SINE Alu 11 311 0 197 156 0 0 chr1 256086209 256086241 -26107423 - L2 LINE L2 -21 3292 3261 778 178 0 0 chr1 256086537 256086655 -26107009 + FLAM_C SINE Alu 2 119 -24 329 226 83 24 chr1 256086670 256086754 -26106910 - L1MC4 LINE L1 -1339 6703 6615 * 379 233 147 9 chr1 256086684 256086800 -26106864 + L1MC4 LINE L1 6614 6745 -1297 275 292 52 112 chr1 256087670 256087937 -26105727 + MIR SINE MIR 6 256 -6 188 273 0 0 chr1 256090981 256091025 -26102639 + L2 LINE L2 2934 2977 -337 409 130 0 0 chr1 256091878 256091947 -26101717 - L1 LINE L1 -1419 4727 4659 607 323 33 21 chr1 256092329 256092562 -26101102 + MIR SINE MIR 12 252 -10 636 188 0 0 chr1 256092617 256092734 -26100930 + MER103 DNA DNA 1 117 -49 180 0 0 0 chr1 256093279 256093299 -26100365 + (A)n Simple_repeat Simple_repeat 1 20 0 2450 165 26 9 chr1 256094377 256094796 -26098868 - MSTB LTR MaLR 0 426 1 706 257 58 10 chr1 256095829 256096035 -26097629 + MIR SINE MIR 46 261 -1 218 125 0 0 chr1 256096097 256096129 -26097535 - L2 LINE L2 0 3272 3241 217 356 87 0 chr1 256096296 256096400 -26097264 + L2 LINE L2 3200 3312 -1 875 159 0 0 chr1 256097131 256097257 -26096407 - FRAM SINE Alu -31 145 20 1733 160 19 35 chr1 256097825 256098137 -26095527 - AluJo SINE Alu -4 308 2 2430 103 0 0 chr1 256098718 256099020 -26094644 - AluSx SINE Alu -10 302 1 460 286 124 24 chr1 256099215 256099425 -26094239 - L2 LINE L2 -2 3311 3081 963 295 116 54 chr1 256099454 256099612 -26094052 - L2 LINE L2 -1076 2238 2091 2370 95 3 19 chr1 256099612 256099929 -26093735 + AluSx SINE Alu 1 312 0 963 295 116 54 chr1 256099929 256100451 -26093213 - L2 LINE L2 -1223 2091 1516 674 131 84 0 chr1 256100628 256100735 -26092929 + AluSg/x SINE Alu 190 305 -7 367 232 119 8 chr1 256101040 256101205 -26092459 - MLT1J1 LTR MaLR -198 248 25 234 310 155 17 chr1 256101823 256101939 -26091725 + L2 LINE L2 3124 3255 -17 338 313 10 0 chr1 256102051 256102150 -26091514 + MIR SINE MIR 150 249 -13 221 287 65 46 chr1 256102960 256103068 -26090596 + MIR SINE MIR 116 225 -37 282 304 51 0 chr1 256103381 256103460 -26090204 - MIR SINE MIR -66 142 60 840 192 54 85 chr1 256104930 256105154 -26088510 - MER20 DNA MER1_type 0 219 3 435 299 57 57 chr1 256105277 256105488 -26088176 - MIR SINE MIR -38 224 14 209 318 0 71 chr1 256105695 256105780 -26087884 + MIR SINE MIR 66 144 -64 614 217 50 78 chr1 256105795 256105848 -26087816 + MER5B DNA MER1_type 1 54 -124 2525 124 83 10 chr1 256105848 256106243 -26087421 + MSTA LTR MaLR 5 428 0 9987 163 25 2 chr1 256106243 256107857 -26085807 + MSTA-int LTR MaLR 1 1651 0 2690 120 62 5 chr1 256107859 256108260 -26085404 + MSTA LTR MaLR 3 426 -2 614 217 50 78 chr1 256108260 256108382 -26085282 + MER5B DNA MER1_type 54 175 -3 332 191 27 136 chr1 256109023 256109170 -26084494 - MIR SINE MIR -13 249 119 246 284 9 69 chr1 256109234 256109350 -26084314 + L2 LINE L2 3134 3242 -30 216 0 0 0 chr1 256109680 256109704 -26083960 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2285 128 3 0 chr1 256109821 256110159 -26083505 + AluSq SINE Alu 1 339 0 25 0 0 0 chr1 256110358 256110383 -26083281 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr1 256110625 256110649 -26083015 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 256111028 256111052 -26082612 + AT_rich Low_complexity Low_complexity 1 24 0 459 0 0 0 chr1 256111052 256111103 -26082561 + (A)n Simple_repeat Simple_repeat 1 51 0 1085 91 70 32 chr1 256111317 256111359 -26082305 + L1MA4 LINE L1 5972 6011 -289 2350 130 13 39 chr1 256111359 256111744 -26081920 + THE1C LTR MaLR 1 375 0 1085 91 70 32 chr1 256111744 256111888 -26081776 + L1MA4 LINE L1 6011 6165 -135 207 225 0 0 chr1 256111950 256111990 -26081674 + MIR3 SINE MIR 154 193 -15 2017 151 5 40 chr1 256112796 256113174 -26080490 + MLT1B LTR MaLR 26 390 0 249 293 27 13 chr1 256113351 256113426 -26080238 - L2 LINE L2 -518 2796 2721 748 249 116 34 chr1 256113637 256113930 -26079734 - L2 LINE L2 -2 3311 2995 2298 116 0 3 chr1 256114086 256114396 -26079268 + AluSc SINE Alu 1 309 0 615 53 0 0 chr1 256114916 256114991 -26078673 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 1017 179 30 68 chr1 256115811 256116107 -26077557 + MER33 DNA MER1_type 17 301 -23 201 250 83 60 chr1 256116229 256116313 -26077351 + L2 LINE L2 3187 3272 0 2048 138 7 3 chr1 256116386 256116684 -26076980 - AluSx SINE Alu -2 310 12 235 193 11 68 chr1 256120659 256120747 -26072917 + (CCCTG)n Simple_repeat Simple_repeat 3 85 0 2219 116 0 0 chr1 256120984 256121287 -26072377 - AluSg SINE Alu -7 303 1 2394 138 64 19 chr1 256127075 256127495 -26066169 - MER1A DNA MER1_type -90 439 1 374 196 0 135 chr1 256127766 256127914 -26065750 - LTR41 LTR ERVL -6 767 640 1499 191 44 14 chr1 256127917 256128210 -26065454 + AluJb SINE Alu 1 302 -10 266 244 12 24 chr1 256128335 256128417 -26065247 + L1ME LINE L1 5483 5563 -558 515 213 7 71 chr1 256128417 256128558 -26065106 - AluJo SINE Alu -170 142 11 1661 183 0 13 chr1 256128796 256129096 -26064568 - AluJo SINE Alu -16 296 1 370 216 39 49 chr1 256129207 256129309 -26064355 + MER8 DNA MER2_type 3 103 -136 1101 185 0 5 chr1 256129309 256129498 -26064166 + AluJb SINE Alu 117 304 -8 1390 198 8 8 chr1 256130093 256130361 -26063303 + AluJo SINE Alu 40 307 -5 21 57 0 0 chr1 256130585 256130620 -26063044 + AT_rich Low_complexity Low_complexity 1 35 0 2053 132 3 7 chr1 256130642 256130937 -26062727 - AluSq SINE Alu -15 298 5 1360 231 10 10 chr1 256131081 256131393 -26062271 - AluJo SINE Alu 0 312 1 598 224 0 0 chr1 256131417 256131533 -26062131 - FLAM_C SINE Alu -19 124 9 1255 227 95 78 chr1 256131639 256132280 -26061384 + L2 LINE L2 2458 3100 -213 1772 178 23 13 chr1 256132281 256132455 -26061209 - AluJo SINE Alu 0 312 132 2279 114 3 0 chr1 256132455 256132761 -26060903 - AluSq SINE Alu -6 307 1 1772 178 23 13 chr1 256132761 256132776 -26060888 - AluJo SINE Alu -180 132 1 757 176 8 0 chr1 256132776 256132895 -26060769 - FLAM_C SINE Alu -23 120 1 1598 173 25 72 chr1 256132898 256133257 -26060407 - MLT1D LTR MaLR -2 503 162 646 235 0 7 chr1 256133257 256133393 -26060271 + FLAM_C SINE Alu 2 136 -7 712 217 0 0 chr1 256133398 256133518 -26060146 + FLAM_A SINE Alu 1 120 -13 1053 177 3 118 chr1 256133518 256133806 -26059858 + AluJb SINE Alu 45 299 -13 330 268 0 0 chr1 256133806 256133877 -26059787 + MER21B LTR ERV1 16 86 -777 2573 238 51 41 chr1 256133903 256134312 -26059352 + MER21B LTR ERV1 19 423 -440 1451 189 3 49 chr1 256134312 256134619 -26059045 - AluJb SINE Alu -18 294 2 2573 238 51 41 chr1 256134619 256134689 -26058975 + MER21B LTR ERV1 423 491 -372 1548 205 0 3 chr1 256134689 256134992 -26058672 + AluJo SINE Alu 1 302 -10 2573 238 51 41 chr1 256134992 256135237 -26058427 + MER21B LTR ERV1 491 751 -112 310 351 36 0 chr1 256135400 256135511 -26058153 + MIR SINE MIR 73 187 -75 204 250 96 10 chr1 256135786 256135890 -26057774 + L2 LINE L2 2949 3061 -211 651 148 28 0 chr1 256136188 256136296 -26057368 - AluJb SINE Alu -8 304 194 706 197 0 0 chr1 256136337 256136454 -26057210 + FLAM_C SINE Alu 9 125 -18 1790 104 12 0 chr1 256136467 256136718 -26056946 - MER1A DNA MER1_type -39 490 237 5798 61 20 53 chr1 256136739 256137637 -26056027 + SVA Other Other 1 868 -518 1188 45 5 35 chr1 256137867 256138066 -26055598 + SVA Other Other 674 866 -520 692 104 19 66 chr1 256138083 256138295 -26055369 + SVA Other Other 665 866 -520 6858 60 4 35 chr1 256138309 256139293 -26054371 + SVA Other Other 433 1386 0 198 0 0 0 chr1 256139299 256139321 -26054343 + (A)n Simple_repeat Simple_repeat 1 22 0 1265 150 5 5 chr1 256139321 256139514 -26054150 - MER1A DNA MER1_type -279 248 56 1773 147 0 3 chr1 256139880 256140165 -26053499 + AluJb SINE Alu 11 294 -18 26 50 0 0 chr1 256140167 256140207 -26053457 + AT_rich Low_complexity Low_complexity 1 40 0 2049 101 31 0 chr1 256140207 256140495 -26053169 + AluSp SINE Alu 1 297 -16 1522 195 0 13 chr1 256140581 256140888 -26052776 + AluJb SINE Alu 1 303 -9 182 329 59 7 chr1 256140908 256141060 -26052604 + L2 LINE L2 1564 1723 -1591 225 310 57 70 chr1 256141249 256141478 -26052186 + L2 LINE L2 2836 3061 -211 224 269 129 11 chr1 256141505 256141598 -26052066 + L2 LINE L2 3183 3286 -27 350 201 25 132 chr1 256141662 256141821 -26051843 + MLT1D LTR MaLR 72 213 -292 1311 231 0 14 chr1 256141822 256142116 -26051548 + AluJo SINE Alu 5 294 -18 1392 164 124 25 chr1 256142369 256142644 -26051020 + AluJo SINE Alu 1 302 0 531 227 0 0 chr1 256142657 256142754 -26050910 - AluJo SINE Alu -145 167 71 1629 148 23 4 chr1 256142759 256143022 -26050642 + AluSx SINE Alu 1 268 -44 300 70 0 0 chr1 256143034 256143077 -26050587 + (CAA)n Simple_repeat Simple_repeat 3 45 0 273 232 0 0 chr1 256143081 256143137 -26050527 - AluJo SINE Alu -223 79 24 491 164 8 102 chr1 256143195 256143226 -26050438 + L1M4 LINE L1 5473 5505 -661 1564 181 10 7 chr1 256143226 256143519 -26050145 + AluJb SINE Alu 1 294 -18 491 164 8 102 chr1 256143519 256143607 -26050057 + L1M4 LINE L1 5505 5589 -577 670 184 0 0 chr1 256143643 256143752 -26049912 - FLAM_A SINE Alu -30 112 4 2738 197 39 35 chr1 256143752 256144372 -26049292 + L1MB8 LINE L1 5552 6173 -5 1472 188 25 4 chr1 256144417 256144693 -26048971 + AluJo SINE Alu 21 302 -10 2048 136 0 3 chr1 256144995 256145304 -26048360 + AluSq SINE Alu 1 308 -5 340 245 11 11 chr1 256145515 256145609 -26048055 - LTR37A LTR ERV1 -93 333 240 1166 203 8 4 chr1 256145766 256146007 -26047657 - AluJo SINE Alu -26 286 45 22 0 0 0 chr1 256146045 256146067 -26047597 + AT_rich Low_complexity Low_complexity 1 22 0 699 218 0 0 chr1 256146067 256146200 -26047464 - FLAM_C SINE Alu 0 133 1 1430 258 85 32 chr1 256146299 256146904 -26046760 + L2 LINE L2 2458 3097 -216 1435 192 17 27 chr1 256146904 256147071 -26046593 - AluJb SINE Alu -9 303 139 1997 109 34 0 chr1 256147071 256147364 -26046300 - AluSg1 SINE Alu -4 305 3 1435 192 17 27 chr1 256147364 256147493 -26046171 - AluJb SINE Alu -173 139 10 1559 191 14 56 chr1 256147514 256147871 -26045793 - MLT1D LTR MaLR -2 503 162 1480 209 0 7 chr1 256147874 256148171 -26045493 + AluJo SINE Alu 5 299 -13 307 307 0 0 chr1 256148171 256148246 -26045418 + MER21B LTR ERV1 16 90 -773 2818 228 78 40 chr1 256148268 256148430 -26045234 + MER21B LTR ERV1 19 173 -690 1956 139 0 3 chr1 256148430 256148724 -26044940 - AluSq SINE Alu -20 293 1 2818 228 78 40 chr1 256148724 256149034 -26044630 + MER21B LTR ERV1 173 470 -393 1660 174 0 10 chr1 256149034 256149339 -26044325 + AluJo SINE Alu 1 302 -10 2818 228 78 40 chr1 256149339 256149623 -26044041 + MER21B LTR ERV1 470 805 -58 7242 106 19 15 chr1 256149640 256150707 -26042957 + MER11C LTR ERVK 1 1071 0 249 302 112 50 chr1 256150762 256150941 -26042723 + MIR SINE MIR 9 198 -64 207 203 47 31 chr1 256151161 256151225 -26042439 + (CACCC)n Simple_repeat Simple_repeat 1 65 0 665 200 0 0 chr1 256151602 256151722 -26041942 - AluJb SINE Alu -8 304 185 1245 225 7 26 chr1 256151724 256152026 -26041638 - AluJo SINE Alu -16 296 1 345 211 70 77 chr1 256152064 256152220 -26041444 + L1MC4a LINE L1 5723 5879 -242 32 26 0 0 chr1 256152326 256152365 -26041299 + AT_rich Low_complexity Low_complexity 1 39 0 1381 200 29 29 chr1 256152435 256152745 -26040919 + AluJo SINE Alu 3 312 0 2082 102 7 0 chr1 256152792 256153087 -26040577 + AluSg SINE Alu 1 297 -13 345 286 22 94 chr1 256153149 256153249 -26040415 + L1MC4 LINE L1 5483 5560 -2248 536 171 65 41 chr1 256153249 256153372 -26040292 - FLAM_C SINE Alu -4 129 4 345 286 22 94 chr1 256153372 256153495 -26040169 + L1MC4 LINE L1 5560 5690 -2118 628 175 29 0 chr1 256153537 256153640 -26040024 - U6 snRNA snRNA 0 107 2 562 167 9 65 chr1 256153860 256153968 -26039696 + MER8 DNA MER2_type 4 105 -134 969 145 0 0 chr1 256153979 256154124 -26039540 + AluJb SINE Alu 130 274 -38 1581 194 0 0 chr1 256154545 256154829 -26038835 + AluJb SINE Alu 1 284 -28 441 0 0 0 chr1 256154830 256154879 -26038785 + (CA)n Simple_repeat Simple_repeat 2 50 0 1801 71 0 0 chr1 256155198 256155422 -26038242 + AluSq SINE Alu 3 226 -87 862 199 42 121 chr1 256157138 256157470 -26036194 + L1MC4 LINE L1 6718 7080 -938 335 197 0 0 chr1 256157953 256158019 -26035645 - MSTD LTR MaLR -1 395 330 615 186 0 43 chr1 256158020 256158208 -26035456 + GA-rich Low_complexity Low_complexity 1 180 0 1632 174 92 16 chr1 256158217 256158534 -26035130 - MSTD LTR MaLR -55 341 1 1827 142 10 3 chr1 256159669 256159965 -26033699 + AluSq SINE Alu 1 298 -15 1963 124 7 10 chr1 256160170 256160468 -26033196 + AluSq SINE Alu 1 297 -16 1767 155 3 7 chr1 256160779 256161082 -26032582 + AluSx SINE Alu 3 304 -8 2001 110 4 0 chr1 256161828 256162109 -26031555 + AluSg SINE Alu 1 282 -28 22 0 0 0 chr1 256162905 256162927 -26030737 + AT_rich Low_complexity Low_complexity 1 22 0 1382 95 0 0 chr1 256163352 256163541 -26030123 + AluSg/x SINE Alu 107 295 -14 1282 142 40 46 chr1 256164235 256164537 -26029127 + AluY SINE Alu 1 300 -11 605 165 83 0 chr1 256164665 256164774 -26028890 + MLT1D LTR MaLR 1 118 -387 903 203 90 14 chr1 256164882 256165094 -26028570 + MLT1D LTR MaLR 276 503 -2 1967 144 0 3 chr1 256165125 256165431 -26028233 + AluSx SINE Alu 1 305 -7 1728 160 14 0 chr1 256165608 256165902 -26027762 - AluSx SINE Alu -13 299 2 1938 103 14 3 chr1 256166691 256167003 -26026661 - AluSq SINE Alu 0 315 1 304 118 0 0 chr1 256167851 256167902 -26025762 - AluSp/q SINE Alu -2 301 251 199 239 30 15 chr1 256168172 256168239 -26025425 - MIR SINE MIR -56 152 85 243 281 16 0 chr1 256168588 256168652 -26025012 - MIR SINE MIR -177 85 21 1699 117 0 16 chr1 256170139 256170275 -26023389 + AluSx SINE Alu 1 133 -179 2125 113 3 0 chr1 256170275 256170576 -26023088 + AluSp SINE Alu 1 302 -11 1699 117 0 16 chr1 256170576 256170688 -26022976 + AluSx SINE Alu 133 245 -67 2211 187 68 118 chr1 256171151 256171915 -26021749 + LTR8A LTR ERV1 1 726 -1 21 57 0 0 chr1 256172857 256172892 -26020772 + AT_rich Low_complexity Low_complexity 1 35 0 337 327 36 36 chr1 256173089 256173254 -26020410 + L2 LINE L2 3149 3313 0 222 174 0 0 chr1 256173256 256173302 -26020362 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 214 302 157 3 chr1 256173791 256173964 -26019700 + MIR SINE MIR 1 243 -19 248 231 0 0 chr1 256173966 256174031 -26019633 + (ATG)n Simple_repeat Simple_repeat 3 67 0 1055 195 55 30 chr1 256174308 256174544 -26019120 - MIR SINE MIR -13 249 8 683 263 57 5 chr1 256174778 256174972 -26018692 + MIR SINE MIR 48 251 -11 1911 139 0 13 chr1 256175602 256175918 -26017746 + AluSx SINE Alu 1 312 0 2272 98 3 0 chr1 256176311 256176616 -26017048 + AluSp SINE Alu 1 306 -7 247 219 152 48 chr1 256177088 256177193 -26016471 + L2 LINE L2 3145 3260 -12 2152 113 29 76 chr1 256177515 256177897 -26015767 + THE1B LTR MaLR 1 364 0 223 283 98 54 chr1 256178011 256178195 -26015469 + MIR SINE MIR 1 192 -70 1994 116 7 20 chr1 256178212 256178513 -26015151 + AluSx SINE Alu 1 297 -15 1669 180 7 3 chr1 256178708 256179003 -26014661 - AluJo SINE Alu -10 302 7 285 244 0 0 chr1 256180610 256180696 -26012968 + T-rich Low_complexity Low_complexity 1 86 0 367 305 0 60 chr1 256181309 256181353 -26012311 + MIR SINE MIR 120 165 -97 1939 106 51 0 chr1 256181353 256181646 -26012018 + AluSq SINE Alu 1 308 -5 367 305 0 60 chr1 256181646 256181752 -26011912 + MIR SINE MIR 165 261 -1 1971 113 3 10 chr1 256182224 256182517 -26011147 + AluSx SINE Alu 6 296 -16 591 237 26 52 chr1 256182568 256182762 -26010902 + MIR SINE MIR 74 262 0 241 250 97 14 chr1 256182867 256182939 -26010725 - MER5B DNA MER1_type -12 166 89 2182 123 0 0 chr1 256182974 256183282 -26010382 + AluSx SINE Alu 5 312 0 1363 282 56 7 chr1 256183479 256183929 -26009735 + L1MEc LINE L1 62 533 -5863 3070 256 86 16 chr1 256183957 256184286 -26009378 + L1MEc LINE L1 611 916 -5480 1736 40 5 0 chr1 256184286 256184486 -26009178 + AluY SINE Alu 103 303 -8 3070 256 86 16 chr1 256184486 256184557 -26009107 + L1MEc LINE L1 916 981 -5415 216 0 0 0 chr1 256184557 256184581 -26009083 + (CA)n Simple_repeat Simple_repeat 2 25 0 3070 256 86 16 chr1 256184581 256185290 -26008374 + L1MEc LINE L1 981 1798 -4598 1322 223 47 71 chr1 256185292 256185673 -26007991 - MLT1D LTR MaLR -9 496 125 4126 243 34 19 chr1 256185673 256186658 -26007006 + L1MEc LINE L1 2840 3849 -2366 1566 153 73 28 chr1 256186658 256186945 -26006719 + AluJo SINE Alu 1 300 -12 4126 243 34 19 chr1 256186945 256187198 -26006466 + L1MEc LINE L1 3849 4097 -2118 2396 101 0 0 chr1 256187830 256188162 -26005502 + AluSc SINE Alu 1 332 0 278 264 21 111 chr1 256188253 256188397 -26005267 - MER5A DNA MER1_type 0 189 59 750 181 8 0 chr1 256189536 256189663 -26004001 + FLAM_C SINE Alu 2 129 -14 280 283 0 75 chr1 256189674 256189794 -26003870 + MIR SINE MIR 152 262 0 304 274 186 8 chr1 256189900 256190024 -26003640 + MIR SINE MIR 28 173 -89 * 375 246 16 66 chr1 256190021 256190143 -26003521 - L2 LINE L2 0 3313 3198 232 281 0 0 chr1 256190160 256190217 -26003447 + MIR SINE MIR 200 256 -6 256 162 88 29 chr1 256190236 256190304 -26003360 + L2 LINE L2 3242 3313 0 21 0 0 0 chr1 256190335 256190356 -26003308 + AT_rich Low_complexity Low_complexity 1 21 0 897 136 40 45 chr1 256190942 256191109 -26002555 - AluSg/x SINE Alu -9 303 136 2133 122 27 0 chr1 256191109 256191403 -26002261 - AluSx SINE Alu -10 302 1 208 323 32 11 chr1 256191631 256191724 -26001940 + MIR3 SINE MIR 3 97 -111 765 151 16 24 chr1 256193115 256193241 -26000423 - AluJb SINE Alu -182 130 6 1964 124 0 47 chr1 256194331 256194657 -25999007 + AluSx SINE Alu 1 312 0 337 273 8 68 chr1 256194675 256194807 -25998857 - L2 LINE L2 -22 3291 3168 256 297 180 16 chr1 256194841 256194969 -25998695 + MIR SINE MIR 14 162 -100 256 284 0 15 chr1 256196693 256196760 -25996904 + C-rich Low_complexity Low_complexity 4 69 0 1686 178 69 64 chr1 256246970 256247108 -25946556 + L1M4 LINE L1 4735 4871 -1275 1701 170 3 21 chr1 256247108 256247396 -25946268 - AluJb SINE Alu -29 283 1 1686 178 69 64 chr1 256247396 256247723 -25945941 + L1M4 LINE L1 4871 5202 -944 2186 107 0 3 chr1 256247724 256248013 -25945651 + AluSx SINE Alu 1 288 -24 4566 276 65 57 chr1 256248309 256249262 -25944402 + L1M4 LINE L1 2949 3892 -2254 418 152 0 0 chr1 256249262 256249341 -25944323 + AluJ/FRAM SINE Alu 233 311 -1 4566 276 65 57 chr1 256249341 256250500 -25943164 + L1M4 LINE L1 3892 5164 -982 1592 176 7 36 chr1 256250500 256250807 -25942857 + AluJo SINE Alu 1 298 -14 4566 276 65 57 chr1 256250807 256250951 -25942713 + L1M4 LINE L1 5164 5305 -841 2320 64 3 22 chr1 256250960 256251271 -25942393 + AluY SINE Alu 5 309 -2 395 257 26 13 chr1 256251446 256251598 -25942066 - AluSq SINE Alu -149 154 1 1722 223 66 21 chr1 256251610 256252220 -25941444 - L1M4 LINE L1 -2646 3500 2864 2217 131 19 25 chr1 256252221 256252587 -25941077 - THE1B LTR MaLR 0 364 1 1426 101 0 50 chr1 256252587 256252703 -25940961 - THE1B-int LTR MaLR 0 1580 1479 2184 134 0 0 chr1 256252703 256253001 -25940663 + AluSx SINE Alu 1 298 -14 1426 101 0 50 chr1 256253001 256253102 -25940562 - THE1B-int LTR MaLR -101 1479 1374 1311 282 83 31 chr1 256253365 256254315 -25939349 + L1M4b LINE L1 1331 2507 -4631 425 266 92 29 chr1 256254347 256254520 -25939144 - MLT1H1 LTR MaLR -40 515 332 2180 110 0 0 chr1 256254660 256254960 -25938704 - AluY SINE Alu -11 300 1 2173 64 50 0 chr1 256255611 256255893 -25937771 - AluY SINE Alu -15 296 1 481 302 9 0 chr1 256257332 256257448 -25936216 - L3 LINE CR1 -18 1559 1443 517 131 19 0 chr1 256258078 256258185 -25935479 + CT-rich Low_complexity Low_complexity 2 110 0 321 68 0 0 chr1 256258185 256258229 -25935435 + (CA)n Simple_repeat Simple_repeat 1 44 0 308 294 220 16 chr1 256258242 256258487 -25935177 - L1MEc LINE L1 -6035 361 67 1001 224 37 9 chr1 256259175 256259389 -25934275 - MER58A DNA MER1_type 0 224 5 234 136 0 0 chr1 256259450 256259494 -25934170 + (TA)n Simple_repeat Simple_repeat 1 44 0 2463 129 24 21 chr1 256260015 256260433 -25933231 - L1PA15 LINE L1 -3 6162 5744 393 73 0 0 chr1 256260433 256260488 -25933176 - L1PA15 LINE L1 -643 5522 5468 269 234 57 64 chr1 256260840 256260981 -25932683 + MER20B DNA MER1_type 1 140 -643 1308 161 62 0 chr1 256261487 256261761 -25931903 + MER33 DNA MER1_type 34 324 0 334 307 39 8 chr1 256262367 256262494 -25931170 - MIR SINE MIR -55 207 77 1749 104 118 11 chr1 256263119 256263399 -25930265 - AluSg SINE Alu 0 310 1 194 390 75 14 chr1 256263444 256263590 -25930074 + L2 LINE L2 2884 3038 -234 635 255 136 25 chr1 256264196 256264604 -25929060 - L1ME1 LINE L1 -44 6122 5656 21 36 0 0 chr1 256264845 256264873 -25928791 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr1 256264934 256264954 -25928710 + (A)n Simple_repeat Simple_repeat 1 20 0 482 254 59 35 chr1 256265604 256265773 -25927891 - L1ME3A LINE L1 -8 6162 5990 297 283 129 28 chr1 256265804 256266036 -25927628 - L1MDa LINE L1 -4953 1577 1325 1258 130 5 34 chr1 256266281 256266488 -25927176 + AluJb SINE Alu 85 285 -27 4664 152 38 31 chr1 256266714 256266919 -25926745 + L1MB4 LINE L1 5262 5464 -716 2941 106 117 21 chr1 256266919 256267399 -25926265 - MER1A DNA MER1_type -1 526 1 4664 152 38 31 chr1 256267399 256268100 -25925564 + L1MB4 LINE L1 5464 6174 -6 3098 212 85 55 chr1 256268095 256269855 -25923809 + L1ME1 LINE L1 4350 6161 -5 * 4217 215 54 26 chr1 256271337 256272535 -25921129 + L1MB8 LINE L1 3482 4713 -1433 1362 89 16 21 chr1 256272554 256272744 -25920920 + AluSx SINE Alu 1 189 -123 4355 161 47 49 chr1 256272857 256273861 -25919803 + L1MB8 LINE L1 5188 6178 0 485 237 132 35 chr1 256273862 256274090 -25919574 + L1ME LINE L1 5428 5677 -493 204 283 109 33 chr1 256275921 256276013 -25917651 + MIR SINE MIR 48 146 -62 2324 69 20 7 chr1 256277019 256277324 -25916340 - AluY SINE Alu -2 309 1 4363 130 30 6 chr1 256279213 256279921 -25913743 + Tigger2 DNA MER2_type 1 725 -1993 2334 69 14 0 chr1 256280236 256280525 -25913139 - AluY SINE Alu -18 293 1 2001 111 0 7 chr1 256280968 256281239 -25912425 - AluSx SINE Alu -23 289 21 256 206 10 31 chr1 256286273 256286370 -25907294 + T-rich Low_complexity Low_complexity 2 180 0 626 150 0 0 chr1 256286370 256286440 -25907224 - FRAM SINE Alu 0 243 77 9241 98 35 13 chr1 256287655 256288559 -25905105 - THE1B-int LTR MaLR -179 1401 455 2416 94 0 0 chr1 256288559 256288858 -25904806 - AluSc SINE Alu -6 303 5 9241 98 35 13 chr1 256288858 256289324 -25904340 - THE1B-int LTR MaLR -1125 455 1 2401 102 22 25 chr1 256289324 256289686 -25903978 - THE1B LTR MaLR 0 364 4 2267 224 89 21 chr1 256289687 256290969 -25902695 - L1MEc LINE L1 -3277 2938 1628 3913 158 36 69 chr1 256291018 256291851 -25901813 - L1MB8 LINE L1 -9 6169 5375 1966 142 0 3 chr1 256291851 256292165 -25901499 - AluSx SINE Alu 0 312 1 3913 158 36 69 chr1 256292165 256292646 -25901018 - L1MB8 LINE L1 -803 5375 4880 3603 228 70 70 chr1 256292665 256294232 -25899432 - L1MEc LINE L1 -4787 1609 43 197 295 0 16 chr1 256294436 256294497 -25899167 + L2 LINE L2 3161 3220 -93 200 343 46 37 chr1 256295111 256295219 -25898445 - L2 LINE L2 -11 3302 3194 1138 278 111 21 chr1 256295299 256296015 -25897649 - L2 LINE L2 -5 3308 2542 851 201 64 54 chr1 256296015 256296329 -25897335 + L1ME1 LINE L1 5845 6161 -5 699 191 38 67 chr1 256296347 256296556 -25897108 - L2 LINE L2 -801 2513 2311 419 204 204 45 chr1 256297110 256297242 -25896422 + MIR SINE MIR 35 187 -75 264 250 0 0 chr1 256297984 256298040 -25895624 + C-rich Low_complexity Low_complexity 6 61 0 1764 144 32 11 chr1 256298635 256298920 -25894744 - AluJb SINE Alu -5 307 17 1209 138 0 0 chr1 256298960 256299134 -25894530 + AluSg/x SINE Alu 130 303 -9 413 314 111 14 chr1 256299580 256299787 -25893877 + MIR SINE MIR 17 243 -19 382 333 126 5 chr1 256300538 256300760 -25892904 - L3 LINE CR1 -12 1565 1317 790 189 87 9 chr1 256300854 256301085 -25892579 - L1P1 LINE L1 -557 5598 5359 682 308 29 71 chr1 256301087 256301299 -25892365 - L1MEc LINE L1 -5837 559 340 2406 85 0 3 chr1 256301299 256301604 -25892060 - AluSg SINE Alu -6 304 1 682 308 29 71 chr1 256301604 256301913 -25891751 - L1MEc LINE L1 -6056 340 60 841 240 158 7 chr1 256301947 256302351 -25891313 - L1MC5 LINE L1 -496 7465 7001 1976 138 34 3 chr1 256302477 256302773 -25890891 - AluJb SINE Alu -7 305 1 7759 222 92 20 chr1 256302793 256303211 -25890453 + L1ME1 LINE L1 2522 2909 -3257 1770 144 95 0 chr1 256303211 256303319 -25890345 + AluJb SINE Alu 1 97 -215 207 0 0 0 chr1 256303319 256303342 -25890322 + (CA)n Simple_repeat Simple_repeat 2 24 0 1770 144 95 0 chr1 256303342 256303518 -25890146 + AluJb SINE Alu 97 312 0 7759 222 92 20 chr1 256303518 256306089 -25887575 + L1ME1 LINE L1 2909 5711 -455 1081 228 91 25 chr1 256306648 256307042 -25886622 + L1ME1 LINE L1 5703 6122 -44 430 210 112 7 chr1 256306949 256307092 -25886572 + L1MA10 LINE L1 6177 6334 0 * 1349 271 88 37 chr1 256307188 256308193 -25885471 - L1MC5 LINE L1 -750 5396 4765 236 281 98 0 chr1 256308358 256308440 -25885224 - L3 LINE CR1 -353 1224 1135 298 193 204 11 chr1 256308463 256308551 -25885113 + FLAM_A SINE Alu 11 115 -18 378 303 0 21 chr1 256310774 256310916 -25882748 + L1ME4a LINE L1 5528 5666 -455 2288 101 10 0 chr1 256310918 256311224 -25882440 + AluSx SINE Alu 1 309 -3 1883 107 66 0 chr1 256311253 256311525 -25882139 + AluSx SINE Alu 1 290 -22 300 325 40 16 chr1 256311538 256311664 -25882000 + L1ME4a LINE L1 5684 5812 -1996 363 265 145 18 chr1 256311753 256311919 -25881745 + L1ME4a LINE L1 5931 6117 -4 418 289 101 5 chr1 256312635 256312853 -25880811 + L1ME3A LINE L1 5713 5951 -219 392 300 44 78 chr1 256312895 256313122 -25880542 + L1ME3A LINE L1 5940 6161 -3 22 0 0 0 chr1 256313289 256313311 -25880353 + AT_rich Low_complexity Low_complexity 1 22 0 1645 146 44 58 chr1 256313312 256313607 -25880057 + AluJb SINE Alu 1 291 -21 1107 124 43 48 chr1 256314913 256315123 -25878541 + MER67A LTR ERV1 1 209 -334 541 181 120 0 chr1 256315141 256315274 -25878390 + MER67B LTR ERV1 512 660 -1 490 305 130 0 chr1 256315941 256316164 -25877500 + MIR SINE MIR 1 252 -10 356 276 167 21 chr1 256316373 256316565 -25877099 + L2 LINE L2 2613 2832 -482 352 305 85 18 chr1 256317067 256317231 -25876433 - L3 LINE CR1 -89 1488 1314 212 366 0 0 chr1 256318302 256318384 -25875280 + MIR3 SINE MIR 104 185 -23 628 75 0 18 chr1 256318944 256319198 -25874466 + AluY SINE Alu 1 306 -5 185 333 16 16 chr1 256319203 256319266 -25874398 - MER5A DNA MER1_type -84 105 43 187 354 61 10 chr1 256319272 256319371 -25874293 - MIR3 SINE MIR -23 185 82 463 266 124 58 chr1 256319585 256319931 -25873733 - L2 LINE L2 -95 3218 2850 1617 123 41 0 chr1 256319932 256320257 -25873407 - Tigger4(Zombi) DNA MER2_type 0 2731 1 764 152 42 67 chr1 256320261 256320426 -25873238 - L2 LINE L2 -467 2847 2687 3413 164 23 19 chr1 256320427 256320974 -25872690 + L1MB7 LINE L1 5400 5952 -232 1941 158 0 6 chr1 256320974 256321285 -25872379 + AluSx SINE Alu 1 309 -3 3413 164 23 19 chr1 256321285 256321471 -25872193 + L1MB7 LINE L1 5952 6136 -48 339 246 263 6 chr1 256321521 256321632 -25872032 - L2 LINE L2 -1501 1813 1732 2326 90 3 7 chr1 256321632 256321942 -25871722 + AluSc SINE Alu 1 309 0 339 246 263 6 chr1 256321942 256322005 -25871659 - L2 LINE L2 -1582 1732 1594 235 315 46 0 chr1 256323011 256323119 -25870545 + Charlie2 DNA MER1_type 27 139 -2723 833 226 181 6 chr1 256323197 256323511 -25870153 + Charlie2 DNA MER1_type 1856 2224 -638 705 231 14 7 chr1 256323545 256323688 -25869976 - AluJb SINE Alu -35 277 134 439 218 116 52 chr1 256323705 256324131 -25869533 + Charlie2 DNA MER1_type 2315 2862 0 250 244 133 11 chr1 256324196 256324286 -25869378 + MER5A DNA MER1_type 9 109 -80 294 291 77 0 chr1 256324716 256324833 -25868831 - L2 LINE L2 -2 3311 3186 226 319 14 0 chr1 256325267 256325336 -25868328 - MIR SINE MIR -7 255 186 219 370 37 12 chr1 256325351 256325432 -25868232 + MIR SINE MIR 13 95 -167 21 36 0 0 chr1 256325682 256325710 -25867954 + AT_rich Low_complexity Low_complexity 1 28 0 2121 123 14 0 chr1 256325843 256326136 -25867528 + AluSx SINE Alu 1 297 -15 219 323 115 0 chr1 256326216 256326312 -25867352 + L2 LINE L2 3163 3269 -3 481 282 88 48 chr1 256326972 256327199 -25866465 - MIR SINE MIR 0 262 27 278 328 156 0 chr1 256327333 256327461 -25866203 + L2 LINE L2 2575 2722 -592 717 280 75 40 chr1 256328370 256328716 -25864948 + L3 LINE CR1 1084 1441 -136 1886 115 10 24 chr1 256328787 256329082 -25864582 + AluJb SINE Alu 1 291 -21 750 171 8 0 chr1 256329612 256329741 -25863923 + FLAM_A SINE Alu 4 133 0 608 251 40 57 chr1 256330324 256330551 -25863113 + MLT1H1 LTR MaLR 333 555 0 1736 236 44 13 chr1 256330595 256331630 -25862034 - L1MEc LINE L1 -3321 3061 1933 541 314 39 25 chr1 256331693 256331718 -25861946 + MLT1H LTR MaLR 79 102 -447 2200 113 0 52 chr1 256331718 256332044 -25861620 + AluSg SINE Alu 1 309 -1 541 314 39 25 chr1 256332044 256332222 -25861442 + MLT1H LTR MaLR 102 285 -264 183 231 99 66 chr1 256333672 256333763 -25859901 - L2 LINE L2 -889 2425 2332 2291 147 50 22 chr1 256334104 256334145 -25859519 - MSTA LTR MaLR 0 428 390 2050 133 3 7 chr1 256334145 256334439 -25859225 + AluJb SINE Alu 1 293 -19 2291 147 50 22 chr1 256334439 256334813 -25858851 - MSTA LTR MaLR -38 390 1 376 125 11 68 chr1 256335889 256335977 -25857687 - L1MC3 LINE L1 -9 7776 7694 358 164 15 0 chr1 256335977 256336044 -25857620 - L1MC3 LINE L1 -520 7265 7198 237 247 26 26 chr1 256336062 256336139 -25857525 - MLT1F1 LTR MaLR -445 122 46 2574 54 0 10 chr1 256340616 256340930 -25852734 - AluY SINE Alu 0 311 1 349 259 57 0 chr1 256340967 256341120 -25852544 - L1MEc LINE L1 -4706 1829 1516 251 191 29 29 chr1 256341433 256341501 -25852163 - L1MEc LINE L1 -5081 1291 1224 195 414 43 21 chr1 256342335 256342475 -25851189 + L2 LINE L2 3121 3263 -9 4417 131 40 1 chr1 256345259 256345975 -25847689 + Tigger2 DNA MER2_type 1 744 -1974 1466 92 88 17 chr1 256346038 256346278 -25847386 + Tigger2 DNA MER2_type 2462 2718 0 413 254 116 23 chr1 256348026 256348214 -25845450 + MIR SINE MIR 7 208 -54 1913 119 6 67 chr1 256349554 256349881 -25843783 + AluJb SINE Alu 1 307 -5 26 0 0 0 chr1 256351385 256351411 -25842253 + AT_rich Low_complexity Low_complexity 1 26 0 1914 137 3 32 chr1 256355601 256355914 -25837750 + AluJb SINE Alu 1 304 -8 608 212 146 0 chr1 256357093 256357258 -25836406 - MER5A DNA MER1_type 0 189 1 1682 132 10 17 chr1 256358159 256358455 -25835209 + AluY SINE Alu 1 294 -17 2095 93 7 23 chr1 256358470 256358780 -25834884 + AluSq SINE Alu 5 309 -4 1064 122 0 0 chr1 256361331 256361478 -25832186 - AluJb SINE Alu -21 291 145 1162 281 64 58 chr1 256361609 256362379 -25831285 - L1M4 LINE L1 -1526 4620 3847 1290 241 153 52 chr1 256362382 256362868 -25830796 - L1MC4a LINE L1 -1916 5892 5336 324 0 0 0 chr1 256362868 256362904 -25830760 + (TG)n Simple_repeat Simple_repeat 2 37 0 1290 241 153 52 chr1 256362904 256362997 -25830667 - L1MC4a LINE L1 -2472 5336 5254 770 167 46 88 chr1 256364147 256364363 -25829301 - MIR SINE MIR 0 262 56 725 180 12 54 chr1 256364408 256364575 -25829089 - MLT1D LTR MaLR -345 160 1 243 205 39 39 chr1 256364618 256364696 -25828968 + Charlie6 DNA MER1_type 1 78 -3422 1037 227 106 54 chr1 256364946 256365277 -25828387 + Charlie6 DNA MER1_type 96 443 -3057 * 3126 232 126 14 chr1 256365253 256366218 -25827446 + Charlie6 DNA MER1_type 634 1706 -1794 2014 130 10 0 chr1 256366218 256366511 -25827153 + AluSx SINE Alu 1 296 -16 2918 202 68 30 chr1 256368050 256368861 -25824803 + Charlie6 DNA MER1_type 2267 3108 -392 244 211 92 83 chr1 256368876 256368949 -25824715 + L1ME1 LINE L1 6053 6129 -37 2175 114 3 3 chr1 256368949 256369248 -25824416 - AluSq SINE Alu -14 299 1 244 211 92 83 chr1 256369248 256369283 -25824381 + L1ME1 LINE L1 6129 6162 -4 643 266 64 30 chr1 256370040 256370273 -25823391 - MIR SINE MIR -2 260 20 2070 113 0 3 chr1 256370713 256371020 -25822644 + AluSx SINE Alu 1 306 0 3028 166 35 11 chr1 256371038 256371585 -25822079 + MER68 LTR ERV1 3 562 0 2070 124 0 3 chr1 256371982 256372272 -25821392 + AluSx SINE Alu 1 289 -23 24 32 0 0 chr1 256372465 256372496 -25821168 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr1 256372620 256372662 -25821002 + AT_rich Low_complexity Low_complexity 1 42 0 1091 153 84 16 chr1 256372934 256373124 -25820540 + AluJb SINE Alu 87 289 -23 690 157 0 0 chr1 256373306 256373408 -25820256 + Tigger3b DNA MER2_type 1 102 -1129 2315 60 33 50 chr1 256373453 256373517 -25820147 + Tigger3b DNA MER2_type 279 343 -2685 1922 106 8 0 chr1 256373517 256373771 -25819893 - AluSx SINE Alu -16 296 41 2315 60 33 50 chr1 256373771 256374070 -25819594 + Tigger3b DNA MER2_type 343 636 -595 805 111 16 16 chr1 256374074 256374200 -25819464 + AluSq/x SINE Alu 6 131 -182 245 235 47 0 chr1 256374519 256374604 -25819060 + L1MC4 LINE L1 6614 6702 -1340 3592 113 46 9 chr1 256374633 256375216 -25818448 + Tigger3b DNA MER2_type 628 1232 0 215 238 40 10 chr1 256375667 256375768 -25817896 + (TA)n Simple_repeat Simple_repeat 1 104 0 911 282 78 66 chr1 256375877 256376349 -25817315 - L2 LINE L2 -10 3303 2826 234 325 99 6 chr1 256376317 256376473 -25817191 + MIR SINE MIR 17 188 -63 * 23 0 0 0 chr1 256376594 256376617 -25817047 + AT_rich Low_complexity Low_complexity 1 23 0 333 303 0 11 chr1 256378050 256378139 -25815525 + MIR3 SINE MIR 121 208 0 2208 122 0 0 chr1 256380224 256380518 -25813146 + AluSx SINE Alu 1 294 -18 747 209 68 0 chr1 256381379 256381542 -25812122 - MIR SINE MIR 0 262 89 626 144 0 0 chr1 256381553 256381643 -25812021 - 5S rRNA rRNA -31 90 1 2322 97 0 7 chr1 256381947 256382257 -25811407 - AluSx SINE Alu -4 308 1 2277 103 3 0 chr1 256383463 256383765 -25809899 - AluSp SINE Alu -10 303 1 2180 110 0 0 chr1 256383839 256384139 -25809525 - AluY SINE Alu -11 300 1 2332 35 50 0 chr1 256384790 256385072 -25808592 - AluY SINE Alu -15 296 1 234 281 295 43 chr1 256385316 256385455 -25808209 - MIR3 SINE MIR -32 176 3 2482 41 7 0 chr1 256385490 256385784 -25807880 + AluY SINE Alu 1 296 -15 1818 168 0 0 chr1 256385995 256386275 -25807389 - AluJb SINE Alu -30 282 3 21 81 0 14 chr1 256386712 256386723 -25806941 + AT_rich Low_complexity Low_complexity 1 11 -62 2185 108 0 32 chr1 256386723 256387038 -25806626 - AluSx SINE Alu -7 305 1 21 81 0 14 chr1 256387038 256387100 -25806564 + AT_rich Low_complexity Low_complexity 11 73 0 1128 230 24 17 chr1 256388070 256388366 -25805298 + L1MB8 LINE L1 5879 6176 -2 1686 151 0 4 chr1 256388408 256388667 -25804997 - AluJb SINE Alu -54 258 1 364 159 136 34 chr1 256388993 256389081 -25804583 - MER5C DNA MER1_type -2 322 226 478 154 109 9 chr1 256389091 256389201 -25804463 - MER5C DNA MER1_type -200 124 4 4249 149 62 48 chr1 256389463 256390330 -25803334 + L1MB7 LINE L1 5287 6165 -19 2114 103 10 3 chr1 256391113 256391403 -25802261 + AluSq SINE Alu 1 292 -21 2862 210 27 12 chr1 256391411 256392098 -25801566 + L1MB8 LINE L1 5211 5904 -274 1813 116 56 4 chr1 256392106 256392374 -25801290 + AluSx SINE Alu 9 290 -22 1269 201 22 74 chr1 256392475 256392798 -25800866 - L1MC4a LINE L1 -1024 6784 6479 222 91 0 0 chr1 256394361 256394394 -25799270 + (CA)n Simple_repeat Simple_repeat 2 34 0 2125 113 0 0 chr1 256394900 256395221 -25798443 - AluSx SINE Alu 0 321 1 5064 143 44 6 chr1 256395312 256396401 -25797263 - L1MA9 LINE L1 0 6312 5090 6087 216 25 21 chr1 256396406 256396694 -25796970 + L1M4c LINE L1 2329 2614 -3768 1822 188 0 0 chr1 256396694 256397003 -25796661 + AluJb SINE Alu 1 309 -3 6087 216 25 21 chr1 256397003 256397780 -25795884 + L1M4c LINE L1 2614 3407 -2975 2179 120 7 3 chr1 256397780 256398088 -25795576 + AluSx SINE Alu 3 311 -1 6087 216 25 21 chr1 256398088 256398557 -25795107 + L1M4c LINE L1 3407 3873 -2509 202 167 0 0 chr1 256399732 256399762 -25793902 - L2 LINE L2 -19 3294 3265 631 252 92 17 chr1 256399922 256400160 -25793504 - MER112 DNA MER1_type 0 256 1 385 173 7 214 chr1 256401087 256401376 -25792288 - L1MC4 LINE L1 0 8042 7814 295 284 193 64 chr1 256402014 256402423 -25791241 + L2 LINE L2 2784 3267 -5 343 289 118 20 chr1 256402663 256402815 -25790849 - MER5A DNA MER1_type -22 167 1 325 298 119 26 chr1 256402852 256403003 -25790661 - MER91A DNA MER1_type -1 195 31 214 271 52 62 chr1 256403496 256403592 -25790072 - L2 LINE L2 -16 3256 3162 385 301 0 0 chr1 256403817 256403920 -25789744 + MIR SINE MIR 56 158 -104 1577 164 40 7 chr1 256404090 256404364 -25789300 + MLT1A1 LTR MaLR 83 365 0 414 243 216 0 chr1 256404799 256404980 -25788684 - LTR50 LTR ERVL -34 761 542 559 191 26 0 chr1 256404980 256405095 -25788569 + L1MB2 LINE L1 5579 5696 -487 1565 132 74 82 chr1 256405099 256405463 -25788201 - THE1C LTR MaLR -12 363 3 2817 150 19 29 chr1 256405463 256405765 -25787899 + L1MB2 LINE L1 5690 5987 -184 2097 153 68 8 chr1 256405765 256406117 -25787547 + THE1C LTR MaLR 1 373 -2 2817 150 19 29 chr1 256406117 256406301 -25787363 + L1MB2 LINE L1 5987 6171 0 463 274 140 13 chr1 256406306 256406463 -25787201 - LTR50 LTR ERVL -232 563 387 545 211 18 9 chr1 256407106 256407220 -25786444 - L2 LINE L2 -1 3312 3198 1873 158 69 65 chr1 256407417 256407858 -25785806 + L1MA7 LINE L1 5848 6290 -1 224 261 58 14 chr1 256408214 256408283 -25785381 - L2 LINE L2 -36 3277 3206 1863 152 32 78 chr1 256408307 256408611 -25785053 + MLT1B LTR MaLR 1 283 -107 9185 200 19 35 chr1 256408611 256410395 -25783269 + MER52A LTR ERV1 1 1755 0 1863 152 32 78 chr1 256410395 256410499 -25783165 + MLT1B LTR MaLR 283 390 0 2012 117 33 0 chr1 256410888 256411193 -25782471 - AluSp SINE Alu 0 317 4 236 254 0 0 chr1 256411285 256411340 -25782324 + L2 LINE L2 3251 3305 -8 1431 184 67 0 chr1 256411921 256412203 -25781461 + AluSq SINE Alu 1 301 -12 254 221 131 11 chr1 256412450 256412556 -25781108 + L1ME3 LINE L1 5845 5962 -200 218 135 0 0 chr1 256412556 256412593 -25781071 + MIR SINE MIR 176 212 -50 1948 125 43 0 chr1 256412699 256412978 -25780686 - AluSx SINE Alu -20 292 2 2191 129 3 0 chr1 256414444 256414746 -25778918 + AluSx SINE Alu 1 303 -9 306 0 0 0 chr1 256417382 256417416 -25776248 + (TG)n Simple_repeat Simple_repeat 2 35 0 201 283 182 0 chr1 256417551 256417650 -25776014 - L3 LINE CR1 -12 1565 1449 297 294 40 114 chr1 256417783 256418188 -25775476 - L2 LINE L2 -87 3185 2811 954 224 29 5 chr1 256418304 256418514 -25775150 - MIR SINE MIR 0 262 48 191 348 0 29 chr1 256418548 256418617 -25775047 - L2 LINE L2 -649 2665 2599 313 327 53 0 chr1 256419381 256419494 -25774170 - L2 LINE L2 -4 3309 3191 483 204 173 6 chr1 256419512 256419674 -25773990 - LTR50 LTR ERVL -31 764 576 476 216 203 0 chr1 256419804 256419952 -25773712 - LTR50 LTR ERVL -523 272 95 198 191 0 0 chr1 256420371 256420418 -25773246 + CT-rich Low_complexity Low_complexity 3 49 0 2071 100 4 11 chr1 256420420 256420701 -25772963 - AluSx SINE Alu -33 279 1 267 152 0 0 chr1 256420746 256420792 -25772872 + CT-rich Low_complexity Low_complexity 3 48 0 2254 129 0 0 chr1 256420799 256421110 -25772554 - AluSx SINE Alu -1 311 1 2486 50 3 3 chr1 256421151 256421448 -25772216 - AluY SINE Alu -14 297 1 25 0 0 0 chr1 256421552 256421577 -25772087 + AT_rich Low_complexity Low_complexity 1 25 0 492 236 121 38 chr1 256421609 256421679 -25771985 + L2 LINE L2 3144 3207 -106 3131 165 58 30 chr1 256421679 256422218 -25771446 - MLT2B3 LTR ERVL 0 554 1 492 236 121 38 chr1 256422218 256422304 -25771360 + L2 LINE L2 3207 3313 0 2274 115 0 0 chr1 256423056 256423351 -25770313 - AluSc SINE Alu -14 295 1 704 173 89 30 chr1 256423570 256423738 -25769926 + MER53 DNA DNA 1 178 -11 671 199 82 18 chr1 256423588 256423759 -25769905 - MER53 DNA DNA -7 182 1 * 2429 81 0 34 chr1 256423854 256424177 -25769487 + AluSx SINE Alu 1 312 0 440 175 19 113 chr1 256425021 256425097 -25768567 + L1MB3 LINE L1 5986 6068 -106 1611 165 0 11 chr1 256425097 256425369 -25768295 + AluJo SINE Alu 1 269 -43 440 175 19 113 chr1 256425369 256425465 -25768199 + L1MB3 LINE L1 6068 6153 -21 258 298 121 35 chr1 256426139 256426280 -25767384 + MIR3 SINE MIR 56 208 0 590 221 40 20 chr1 256427211 256427360 -25766304 + MLT1F LTR MaLR 386 537 -5 2176 136 111 3 chr1 256427802 256428171 -25765493 - MSTA LTR MaLR -1 427 19 2092 150 82 42 chr1 256429695 256429929 -25763735 + MLT2C1 LTR ERVL 1 257 -140 1716 186 16 3 chr1 256429929 256430235 -25763429 + AluJo SINE Alu 1 310 -2 2092 150 82 42 chr1 256430235 256430380 -25763284 + MLT2C1 LTR ERVL 257 395 -2 237 257 145 73 chr1 256430789 256430968 -25762696 + MIR SINE MIR 20 211 -51 399 291 54 40 chr1 256431457 256431605 -25762059 + MIR3 SINE MIR 38 187 -21 1809 141 26 0 chr1 256431618 256431912 -25761752 - AluJb SINE Alu 0 309 9 231 284 11 45 chr1 256432141 256432229 -25761435 + MER103 DNA DNA 34 118 -48 812 181 0 0 chr1 256432234 256432378 -25761286 + FRAM SINE Alu 25 168 -8 227 326 30 22 chr1 256432884 256433019 -25760645 + L2 LINE L2 2651 2786 -528 203 98 268 0 chr1 256433450 256433491 -25760173 - L2 LINE L2 0 3313 3262 203 286 275 22 chr1 256434277 256434368 -25759296 + MIR SINE MIR 16 129 -79 221 238 0 0 chr1 256434374 256434416 -25759248 + polypyrimidine Low_complexity Low_complexity 2 43 0 264 211 19 0 chr1 256434420 256434472 -25759192 - L2 LINE L2 -15 3298 3246 496 231 100 31 chr1 256434839 256434969 -25758695 - L2 LINE L2 0 3272 3134 1954 54 12 0 chr1 256435104 256435345 -25758319 + L1PA5 LINE L1 5760 6003 -151 232 147 0 0 chr1 256435445 256435479 -25758185 - L1P LINE L1 -1178 4968 4935 5893 119 3 9 chr1 256435533 256436420 -25757244 - L1P LINE L1 -1224 4922 4041 863 195 6 6 chr1 256436462 256436621 -25757043 - FAM SINE Alu -5 44 1 2170 113 3 0 chr1 256436752 256437045 -25756619 + AluSx SINE Alu 5 298 -14 1978 107 73 22 chr1 256439354 256439710 -25753954 + THE1C LTR MaLR 1 374 -1 5493 99 33 1 chr1 256439897 256440722 -25752942 - L1MA5A LINE L1 -8 6289 5439 920 121 0 0 chr1 256441418 256441550 -25752114 + AluJb SINE Alu 2 133 -179 217 68 45 0 chr1 256441555 256441599 -25752065 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 2017 108 25 0 chr1 256441719 256442021 -25751643 - AluSp SINE Alu 0 309 1 2232 109 3 3 chr1 256442558 256442862 -25750802 + AluSq SINE Alu 1 304 -9 2832 95 18 26 chr1 256443029 256443483 -25750181 + L1PA14 LINE L1 5707 6156 -5 216 261 0 0 chr1 256443737 256443783 -25749881 + GA-rich Low_complexity Low_complexity 2 47 0 26 0 0 0 chr1 256443960 256443986 -25749678 + GC_rich Low_complexity Low_complexity 1 26 0 564 138 11 0 chr1 256444539 256444633 -25749031 - AluSp/q SINE Alu 0 313 219 509 198 0 0 chr1 256444699 256444785 -25748879 - AluJb SINE Alu -87 225 140 2203 109 0 0 chr1 256444828 256445122 -25748542 - AluSx SINE Alu -18 294 1 936 135 0 0 chr1 256445126 256445259 -25748405 - AluSq/x SINE Alu -179 133 1 1115 229 79 32 chr1 256445278 256445619 -25748045 + LTR16B LTR ERVL 107 463 -1 364 213 32 21 chr1 256445622 256445716 -25747948 + L1ME LINE L1 5650 5744 -426 365 256 0 23 chr1 256445811 256445897 -25747767 + Charlie8 DNA MER1_type 1 84 -2333 258 139 47 0 chr1 256446039 256446082 -25747582 - MIR SINE MIR -79 129 85 693 214 41 22 chr1 256446160 256446388 -25747276 + MER106B DNA MER1_type 4 1059 0 677 283 75 0 chr1 256446495 256446707 -25746957 + MIR SINE MIR 33 260 -2 2516 239 101 19 chr1 256446746 256447450 -25746214 + LTR41 LTR ERVL 3 764 -9 541 210 94 0 chr1 256447538 256447676 -25745988 + MER103 DNA DNA 8 158 -8 450 65 0 0 chr1 256447692 256447754 -25745910 + (TG)n Simple_repeat Simple_repeat 2 63 0 230 297 135 27 chr1 256448527 256448638 -25745026 - L2 LINE L2 -9 3304 3182 233 359 0 22 chr1 256449181 256449273 -25744391 + MER5B DNA MER1_type 18 107 -71 1477 144 55 62 chr1 256449300 256449591 -25744073 - AluJb SINE Alu -13 299 11 478 143 0 0 chr1 256449845 256449915 -25743749 + AluY SINE Alu 219 288 -23 183 186 0 0 chr1 256449946 256449989 -25743675 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 6657 49 8 4 chr1 256450074 256451042 -25742622 - L1PA6 LINE L1 -11 6143 5146 2084 128 0 3 chr1 256451648 256451946 -25741718 - AluSx SINE Alu -15 297 1 183 304 22 33 chr1 256452208 256452300 -25741364 - MIR SINE MIR -6 256 166 444 247 101 14 chr1 256454243 256454403 -25739261 + MER5A DNA MER1_type 7 177 -1 349 291 87 5 chr1 256454993 256455199 -25738465 + L1MC4a LINE L1 5173 5395 -751 299 278 105 6 chr1 256455257 256455419 -25738245 + L1MC4a LINE L1 5748 5925 -1883 742 200 0 0 chr1 256455516 256455656 -25738008 - FLAM_C SINE Alu -3 140 1 1440 147 83 16 chr1 256455908 256456160 -25737504 - AluSx SINE Alu -30 282 14 2282 86 3 3 chr1 256457016 256457308 -25736356 - AluSg SINE Alu -18 292 1 1687 185 0 3 chr1 256457843 256458130 -25735534 + AluJb SINE Alu 1 286 -26 22 0 0 0 chr1 256458132 256458154 -25735510 + AT_rich Low_complexity Low_complexity 1 22 0 1730 147 10 52 chr1 256458500 256458647 -25735017 + AluJo SINE Alu 1 130 -182 2294 89 3 13 chr1 256458647 256458951 -25734713 + AluSp SINE Alu 1 301 -12 1730 147 10 52 chr1 256458951 256459110 -25734554 + AluJo SINE Alu 130 294 -18 185 265 96 12 chr1 256459756 256459839 -25733825 - MIR SINE MIR -78 130 41 21 0 0 0 chr1 256460820 256460841 -25732823 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr1 256462488 256462552 -25731112 + AT_rich Low_complexity Low_complexity 1 64 0 1658 166 18 11 chr1 256462614 256462897 -25730767 + AluJb SINE Alu 1 285 -27 183 378 37 0 chr1 256463551 256463633 -25730031 + L2 LINE L2 3188 3272 0 1136 44 0 0 chr1 256464519 256464656 -25729008 - L1PA3 LINE L1 -5 6150 6014 361 269 19 19 chr1 256465969 256466073 -25727591 - MIR SINE MIR -3 259 156 453 160 9 3 chr1 256467037 256467262 -25726402 + AluJb SINE Alu 3 295 -17 2497 246 88 66 chr1 256468896 256470070 -25723594 - L2 LINE L2 0 3313 2099 1135 105 262 52 chr1 256470176 256470424 -25723240 + AluJb SINE Alu 2 301 -1 233 241 0 0 chr1 256471802 256471856 -25721808 + (TA)n Simple_repeat Simple_repeat 2 55 0 353 276 67 46 chr1 256471882 256472189 -25721475 - L1MEc LINE L1 -3933 2282 2008 2389 88 0 0 chr1 256472272 256472580 -25721084 - AluY SINE Alu -1 310 3 2007 137 6 16 chr1 256472632 256472945 -25720719 - AluSx SINE Alu 0 312 3 313 343 60 18 chr1 256472948 256473114 -25720550 - HAL1 LINE L1 -752 1755 1583 802 215 6 31 chr1 256473117 256473280 -25720384 - AluJo SINE Alu -7 295 137 282 116 0 0 chr1 256473289 256473332 -25720332 + (TCCC)n Simple_repeat Simple_repeat 2 44 0 895 128 17 17 chr1 256473358 256473538 -25720126 + CT-rich Low_complexity Low_complexity 1 180 0 646 215 0 15 chr1 256473554 256473689 -25719975 - AluJo SINE Alu -169 133 1 272 198 31 42 chr1 256473697 256473793 -25719871 - L1MEc LINE L1 -4978 1227 1133 513 89 13 0 chr1 256474475 256474554 -25719110 + MADE1 DNA Mariner 1 80 0 428 352 87 59 chr1 256474556 256474721 -25718943 - L1MEc LINE L1 -5285 920 761 2061 122 0 31 chr1 256474721 256475041 -25718623 - AluSx SINE Alu -2 310 1 428 352 87 59 chr1 256475041 256475551 -25718113 - L1MEc LINE L1 -5444 761 226 768 242 0 5 chr1 256476183 256476377 -25717287 + AluSq SINE Alu 116 308 -5 555 261 30 42 chr1 256476450 256476615 -25717049 - MIR SINE MIR 0 262 100 2126 221 58 13 chr1 256476658 256477211 -25716453 - L1ME1 LINE L1 -5 6161 5584 1814 151 11 28 chr1 256477211 256477496 -25716168 + AluJb SINE Alu 3 282 -30 1969 119 30 14 chr1 256477518 256477813 -25715851 + AluSp SINE Alu 1 300 -13 810 211 105 0 chr1 256477813 256478083 -25715581 - L1ME1 LINE L1 -699 5471 5171 207 100 0 0 chr1 256478542 256478572 -25715092 + (GGA)n Simple_repeat Simple_repeat 2 31 0 329 356 101 31 chr1 256479037 256479425 -25714239 - L3 LINE CR1 -62 1515 1101 539 263 50 62 chr1 256479638 256479817 -25713847 - L2 LINE L2 0 3272 3096 279 363 19 19 chr1 256479924 256480081 -25713583 - L2 LINE L2 -2705 609 453 25 0 0 0 chr1 256480526 256480551 -25713113 + AT_rich Low_complexity Low_complexity 1 25 0 217 273 91 18 chr1 256480855 256480965 -25712699 + L3b LINE CR1 1300 1417 -166 307 315 71 16 chr1 256482815 256482942 -25710722 + MIR3 SINE MIR 23 156 -52 328 139 139 13 chr1 256482958 256483037 -25710627 + MLT1G1 LTR MaLR 505 593 -2 502 284 55 73 chr1 256483134 256483462 -25710202 - MLT1I LTR MaLR -10 399 78 236 277 96 36 chr1 256483555 256483638 -25710026 + MIR SINE MIR 57 144 -118 1976 166 72 92 chr1 256484167 256484698 -25708966 + MLT2B1 LTR ERVL 1 520 0 242 279 10 58 chr1 256485024 256485128 -25708536 + LTR9 LTR ERV1 431 529 -83 204 40 0 0 chr1 256485128 256485153 -25708511 + (A)n Simple_repeat Simple_repeat 1 25 0 1472 90 5 0 chr1 256485394 256485583 -25708081 - AluSg SINE Alu -120 190 1 288 314 0 0 chr1 256485680 256485785 -25707879 - L1ME LINE L1 -453 5668 5564 2301 94 3 3 chr1 256487424 256487732 -25705932 + AluSp SINE Alu 1 308 -5 1787 191 0 0 chr1 256487847 256488141 -25705523 - AluJo SINE Alu -18 294 1 335 209 0 0 chr1 256488413 256488480 -25705184 - AluJ/FRAM SINE Alu -9 293 227 486 207 47 7 chr1 256488510 256488660 -25705004 - L1ME4a LINE L1 -5 6116 5961 303 239 157 31 chr1 256488702 256488861 -25704803 - L1ME4a LINE L1 -230 5891 5713 397 274 234 9 chr1 256488989 256489215 -25704449 - L1ME4a LINE L1 -2248 5560 5284 21 0 0 0 chr1 256490034 256490055 -25703609 + AT_rich Low_complexity Low_complexity 1 21 0 264 321 74 95 chr1 256490905 256491326 -25702338 + L2 LINE L2 2810 3221 -51 2144 108 42 33 chr1 256491353 256491714 -25701950 + THE1B LTR MaLR 1 364 0 526 256 62 6 chr1 256491734 256491894 -25701770 - MIR SINE MIR -74 188 20 391 314 102 18 chr1 256492216 256492561 -25701103 - L1ME3A LINE L1 -223 5947 5564 345 259 54 18 chr1 256492750 256492862 -25700802 - MIR SINE MIR -10 252 137 2108 118 6 31 chr1 256493062 256493383 -25700281 - AluSq SINE Alu 0 313 1 990 112 0 0 chr1 256493601 256493735 -25699929 - AluSg/x SINE Alu -23 287 154 35722 32 8 2 chr1 256493979 256499136 -25694528 + L1PA4 LINE L1 968 6155 0 206 357 137 24 chr1 256501229 256501484 -25692180 + L2 LINE L2 1932 2215 -1099 181 343 30 0 chr1 256501668 256501735 -25691929 + L2 LINE L2 3240 3308 -5 406 244 83 9 chr1 256502116 256502272 -25691392 - MIR3 SINE MIR -9 199 31 607 231 113 6 chr1 256502309 256502469 -25691195 + MER58C DNA MER1_type 39 215 0 836 226 27 59 chr1 256502788 256503009 -25690655 - MER58A DNA MER1_type -10 214 1 2388 99 0 0 chr1 256503154 256503467 -25690197 + AluSq SINE Alu 1 313 0 33 25 0 0 chr1 256503884 256503924 -25689740 + AT_rich Low_complexity Low_complexity 1 40 0 1156 62 0 20 chr1 256503981 256504127 -25689537 - AluSq/x SINE Alu -169 143 1 231 273 391 0 chr1 256504247 256504375 -25689289 - MER5A DNA MER1_type 0 189 12 1730 172 33 0 chr1 256504673 256504975 -25688689 + AluJb SINE Alu 1 312 0 2236 35 60 14 chr1 256505061 256505343 -25688321 + AluY SINE Alu 7 301 -10 1640 173 3 55 chr1 256507130 256507442 -25686222 - AluJb SINE Alu -16 296 1 2195 223 67 47 chr1 256507443 256507851 -25685813 + L1MC4 LINE L1 7282 7713 -329 1630 191 7 26 chr1 256507851 256508155 -25685509 + AluJo SINE Alu 2 299 -13 2195 223 67 47 chr1 256508155 256508492 -25685172 + L1MC4 LINE L1 7713 8042 0 193 291 175 10 chr1 256508535 256508638 -25685026 - L2 LINE L2 0 3272 3153 181 283 81 50 chr1 256509107 256509206 -25684458 + MIR SINE MIR 13 114 -148 233 277 77 0 chr1 256509250 256509315 -25684349 - L2 LINE L2 -53 3219 3150 677 262 198 26 chr1 256509672 256509780 -25683884 - HAL1 LINE L1 0 2507 2419 2158 105 40 0 chr1 256509780 256510076 -25683588 - AluSg SINE Alu -2 308 1 677 262 198 26 chr1 256510076 256510311 -25683353 - HAL1 LINE L1 -88 2419 2105 2209 82 11 0 chr1 256510327 256510634 -25683030 + AluSp SINE Alu 1 310 0 275 268 89 36 chr1 256510745 256510857 -25682807 - L2 LINE L2 -5 3267 3150 405 202 133 43 chr1 256511876 256512049 -25681615 - MIR SINE MIR -44 218 37 187 389 56 0 chr1 256512887 256512959 -25680705 - L2 LINE L2 -54 3218 3143 735 214 52 179 chr1 256513018 256513293 -25680371 + L2 LINE L2 2889 3089 -224 2389 100 0 0 chr1 256513293 256513603 -25680061 - AluSg SINE Alu 0 310 1 735 214 52 179 chr1 256513603 256513767 -25679897 + L2 LINE L2 3089 3272 -41 1830 115 25 14 chr1 256514086 256514372 -25679292 + AluSx SINE Alu 1 289 -23 306 331 197 0 chr1 256514572 256514699 -25678965 + L2 LINE L2 3116 3267 -5 237 207 73 85 chr1 256514657 256514739 -25678925 - L2 LINE L2 -42 3230 3150 * 296 325 25 25 chr1 256514974 256515094 -25678570 - MIR SINE MIR 0 262 143 337 291 72 68 chr1 256515196 256515488 -25678176 + L1 LINE L1 4882 5174 -972 2097 207 30 62 chr1 256515643 256516203 -25677461 + L1MC4 LINE L1 6476 7017 -1025 23 54 0 0 chr1 256516336 256516373 -25677291 + AT_rich Low_complexity Low_complexity 1 37 0 2357 82 3 0 chr1 256516829 256517122 -25676542 - AluSp SINE Alu -19 294 1 744 186 15 34 chr1 256517209 256517413 -25676251 + L1M4 LINE L1 4970 5169 -977 23 33 0 0 chr1 256517662 256517692 -25675972 + AT_rich Low_complexity Low_complexity 1 30 0 261 125 0 0 chr1 256518181 256518221 -25675443 - MADE1 DNA Mariner -40 40 1 753 251 173 57 chr1 256520430 256520548 -25673116 + HAL1 LINE L1 578 681 -1826 2001 145 49 12 chr1 256520548 256520872 -25672792 - MER1B DNA MER1_type -1 336 1 753 251 173 57 chr1 256520872 256521195 -25672469 + HAL1 LINE L1 681 965 -1542 1581 183 14 21 chr1 256521195 256521484 -25672180 - AluJo SINE Alu -25 287 1 753 251 173 57 chr1 256521484 256522072 -25671592 + HAL1 LINE L1 965 2473 -34 895 260 90 75 chr1 256522562 256523031 -25670633 - MLT1J LTR MaLR -35 476 1 339 250 140 0 chr1 256523031 256523131 -25670533 - MIR SINE MIR -99 163 50 180 0 0 0 chr1 256523188 256523208 -25670456 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 189 0 0 0 chr1 256523207 256523228 -25670436 + (TA)n Simple_repeat Simple_repeat 2 22 0 531 279 45 34 chr1 256523320 256523499 -25670165 - MIR3 SINE MIR -25 183 3 2273 99 0 13 chr1 256523997 256524300 -25669364 - AluSx SINE Alu -13 299 1 617 291 66 20 chr1 256525001 256525197 -25668467 - MIR SINE MIR 0 262 58 296 222 56 42 chr1 256525827 256525899 -25667765 - L2 LINE L2 -44 3269 3197 275 299 142 15 chr1 256526065 256526199 -25667465 - MIR SINE MIR -80 182 32 240 163 41 71 chr1 256526992 256527050 -25666614 + (TTTAA)n Simple_repeat Simple_repeat 1 56 -39 2163 127 0 3 chr1 256527050 256527357 -25666307 - AluSx SINE Alu -6 306 1 240 163 41 71 chr1 256527357 256527396 -25666268 + (TTTAA)n Simple_repeat Simple_repeat 56 95 0 240 327 79 10 chr1 256527647 256527715 -25665949 - MIR SINE MIR -153 109 30 1824 105 35 8 chr1 256527715 256527972 -25665692 - AluSq SINE Alu -49 264 1 240 327 79 10 chr1 256527972 256528004 -25665660 - MIR SINE MIR -232 30 2 192 298 64 0 chr1 256528012 256528059 -25665605 + L2 LINE L2 3223 3272 0 301 98 0 39 chr1 256528369 256528420 -25665244 - MADE1 DNA Mariner -5 75 27 21 0 0 0 chr1 256528560 256528581 -25665083 + AT_rich Low_complexity Low_complexity 1 21 0 2110 116 0 3 chr1 256529288 256529581 -25664083 + AluSx SINE Alu 1 292 -20 198 178 14 27 chr1 256529588 256529661 -25664003 + GA-rich Low_complexity Low_complexity 1 72 0 2018 119 20 10 chr1 256530228 256530523 -25663141 + AluSx SINE Alu 1 298 -14 23 0 0 0 chr1 256530963 256530986 -25662678 + AT_rich Low_complexity Low_complexity 1 23 0 381 319 36 76 chr1 256531127 256531378 -25662286 + L1MEd LINE L1 95 335 -5784 332 361 39 0 chr1 256531743 256531873 -25661791 + MIR SINE MIR 20 154 -108 28 29 0 0 chr1 256532319 256532354 -25661310 + AT_rich Low_complexity Low_complexity 1 35 0 222 321 0 0 chr1 256533083 256533136 -25660528 + MIR SINE MIR 5 57 -205 1972 142 3 29 chr1 256533281 256533592 -25660072 + AluJb SINE Alu 1 303 -9 1669 185 0 7 chr1 256533766 256534063 -25659601 + AluJo SINE Alu 1 295 -17 2284 96 0 16 chr1 256534164 256534476 -25659188 + AluSx SINE Alu 1 307 -5 463 113 38 0 chr1 256534586 256534666 -25658998 - L1MA8 LINE L1 -11 6280 6198 237 262 275 27 chr1 256535028 256535177 -25658487 + MIR SINE MIR 64 249 -13 3559 141 36 13 chr1 256535761 256536398 -25657266 - L1PB4 LINE L1 0 6156 5505 1659 141 39 77 chr1 256537321 256537537 -25656127 - THE1C LTR MaLR 0 375 179 2276 107 0 10 chr1 256537537 256537845 -25655819 - AluSx SINE Alu -7 305 1 1659 141 39 77 chr1 256537845 256538018 -25655646 - THE1C LTR MaLR -196 179 1 210 154 0 0 chr1 256538461 256538500 -25655164 + A-rich Low_complexity Low_complexity 2 40 0 418 295 18 0 chr1 256538943 256539055 -25654609 - MER81 DNA DNA 0 114 1 306 52 35 17 chr1 256539203 256539261 -25654403 + (CA)n Simple_repeat Simple_repeat 1 59 0 473 246 173 14 chr1 256539627 256539847 -25653817 - ERVL LTR ERVL -385 5379 5125 238 238 100 0 chr1 256540372 256540452 -25653212 + L2 LINE L2 3184 3271 -42 27 0 0 0 chr1 256540981 256541008 -25652656 + GC_rich Low_complexity Low_complexity 1 27 0 291 28 0 0 chr1 256541922 256541958 -25651706 + (TA)n Simple_repeat Simple_repeat 2 37 0 2261 101 0 0 chr1 256542917 256543204 -25650460 + AluSx SINE Alu 9 295 -17 287 263 9 9 chr1 256543401 256543515 -25650149 + HAL1b LINE L1 562 675 -673 2102 132 0 22 chr1 256543975 256544294 -25649370 + AluJb SINE Alu 1 312 0 559 309 138 36 chr1 256544553 256545133 -25648531 + L1M4 LINE L1 2266 2904 -3242 822 192 0 0 chr1 256545228 256545358 -25648306 - FLAM_C SINE Alu -3 130 1 1849 213 86 23 chr1 256545527 256546040 -25647624 - L1MEc LINE L1 -3876 2520 1976 460 244 75 28 chr1 256546105 256546320 -25647344 - L1 LINE L1 -1053 5093 4860 2774 193 100 34 chr1 256596691 256597120 -25596544 + L1ME2 LINE L1 4786 5185 -979 1736 158 14 7 chr1 256597120 256597404 -25596260 + AluJo SINE Alu 6 291 -21 2287 112 0 10 chr1 256597406 256597719 -25595945 + AluSx SINE Alu 1 310 -2 2774 193 100 34 chr1 256597719 256598585 -25595079 + L1ME2 LINE L1 5185 6163 -1 395 135 22 22 chr1 256599660 256599749 -25593915 - L1PA16 LINE L1 0 6166 6078 1493 178 10 46 chr1 256600692 256600995 -25592669 - AluJo SINE Alu -20 292 1 627 264 93 26 chr1 256601269 256601462 -25592202 + MIR SINE MIR 3 208 -54 1266 241 57 35 chr1 256602011 256602434 -25591230 - L2 LINE L2 -1605 1709 1278 1905 129 4 14 chr1 256602615 256602934 -25590730 - AluSx SINE Alu 0 325 10 3152 22 0 0 chr1 256603053 256603463 -25590201 - L1P LINE L1 -2775 3371 2962 7504 26 10 0 chr1 256603463 256604576 -25589088 + L1PA4 LINE L1 5034 6155 0 25 65 0 0 chr1 256604605 256604651 -25589013 + AT_rich Low_complexity Low_complexity 1 46 0 2141 148 0 0 chr1 256605672 256605982 -25587682 - AluSg SINE Alu 0 310 1 31 44 0 0 chr1 256606282 256606327 -25587337 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr1 256606929 256606951 -25586713 + AT_rich Low_complexity Low_complexity 1 22 0 3686 86 4 18 chr1 256607486 256608036 -25585628 + MER41A LTR ERV1 4 545 -9 344 265 0 0 chr1 256608107 256608175 -25585489 + L2 LINE L2 3205 3272 0 814 175 10 92 chr1 256608465 256608671 -25584993 + MER5A DNA MER1_type 1 189 0 2284 112 3 0 chr1 256608786 256609091 -25584573 + AluSg SINE Alu 1 306 -4 2120 90 36 0 chr1 256609309 256609587 -25584077 - AluSg SINE Alu -22 288 1 200 159 0 45 chr1 256610018 256610062 -25583602 + (TATTG)n Simple_repeat Simple_repeat 3 44 0 1689 192 7 3 chr1 256610980 256611277 -25582387 + AluJb SINE Alu 6 303 -9 19609 96 14 8 chr1 256612361 256614104 -25579560 - L1PA8A LINE L1 -134 5997 4266 2519 79 0 0 chr1 256614104 256614409 -25579255 - AluSc SINE Alu -3 306 2 19609 96 14 8 chr1 256614409 256616384 -25577280 - L1PA8A LINE L1 -1865 4266 2264 2346 112 3 0 chr1 256616405 256616717 -25576947 - AluSp SINE Alu 0 313 1 582 214 15 23 chr1 256616735 256616866 -25576798 + MIR SINE MIR 119 248 -14 2355 117 0 0 chr1 256618521 256618829 -25574835 - AluSx SINE Alu -4 308 1 207 0 0 0 chr1 256618967 256618990 -25574674 + (T)n Simple_repeat Simple_repeat 1 23 0 220 98 49 24 chr1 256619926 256619967 -25573697 - L2 LINE L2 -557 2757 2716 723 88 35 0 chr1 256620501 256620614 -25573050 - Tigger5 DNA MER2_type -198 2125 2009 574 212 25 0 chr1 256620615 256620733 -25572931 - Tigger5 DNA MER2_type -2202 121 1 2094 124 14 0 chr1 256620751 256621042 -25572622 + AluSx SINE Alu 1 295 -17 203 0 37 0 chr1 256621262 256621289 -25572375 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 759 106 26 9 chr1 256621294 256621407 -25572257 - FLAM_C SINE Alu -18 115 1 184 224 86 0 chr1 256621685 256621743 -25571921 - L2 LINE L2 0 3313 3251 221 197 0 61 chr1 256622804 256622870 -25570794 + A-rich Low_complexity Low_complexity 4 65 0 207 0 0 0 chr1 256623264 256623287 -25570377 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2191 79 18 0 chr1 256623289 256623567 -25570097 - AluSc SINE Alu -26 283 1 225 94 0 0 chr1 256623778 256623810 -25569854 + MER4B LTR ERV1 555 586 -24 346 282 109 78 chr1 256624422 256624716 -25568948 - L1M2 LINE L1 -6079 770 468 2723 66 20 0 chr1 256625048 256625396 -25568268 - THE1A LTR MaLR 0 355 1 188 252 87 29 chr1 256625571 256625674 -25567990 + MIR3 SINE MIR 15 123 -85 437 257 81 0 chr1 256626205 256626341 -25567323 + MER3 DNA MER1_type 63 209 0 308 301 146 0 chr1 256626350 256626453 -25567211 - MER5A DNA MER1_type 0 189 72 189 0 0 0 chr1 256626606 256626627 -25567037 + (CATTC)n Simple_repeat Simple_repeat 3 23 0 1299 176 37 107 chr1 256626634 256626702 -25566962 - MER7A DNA MER2_type -2692 346 275 3705 110 52 3 chr1 256626702 256627284 -25566380 + MER4B LTR ERV1 1 610 0 1299 176 37 107 chr1 256627284 256627589 -25566075 - MER7A DNA MER2_type -2763 275 1 297 224 93 28 chr1 256627715 256627822 -25565842 + MIR SINE MIR 85 198 -64 2215 123 0 0 chr1 256629001 256629294 -25564370 - AluSx SINE Alu -19 293 1 215 61 30 0 chr1 256629489 256629522 -25564142 + (TC)n Simple_repeat Simple_repeat 2 35 0 208 259 155 43 chr1 256631098 256631214 -25562450 - L2 LINE L2 0 3272 3144 303 277 10 10 chr1 256631308 256631409 -25562255 + MER5A DNA MER1_type 9 109 -80 379 155 0 0 chr1 256631461 256631519 -25562145 - LTR8A LTR ERV1 0 727 670 1032 84 7 13 chr1 256631520 256631674 -25561990 - MER4A LTR ERV1 0 664 512 1527 161 3 89 chr1 256631819 256632143 -25561521 - AluJo SINE Alu -16 296 1 509 165 19 19 chr1 256632155 256632258 -25561406 - U13 snRNA snRNA 0 104 2 219 297 34 8 chr1 256632836 256632954 -25560710 + CT-rich Low_complexity Low_complexity 5 125 0 778 196 0 0 chr1 256633936 256634069 -25559595 + FLAM_C SINE Alu 1 133 0 1700 160 0 28 chr1 256634988 256635276 -25558388 + AluJo SINE Alu 1 280 -32 3153 86 14 2 chr1 256637152 256637584 -25556080 + LTR3b LTR ERVK 1 437 0 515 179 14 11 chr1 256637685 256637866 -25555798 + HERVK3 LTR ERVK 55 272 -6971 354 283 0 0 chr1 256637921 256638013 -25555651 + HERVK3 LTR ERVK 576 667 -6576 5023 177 38 7 chr1 256638017 256638977 -25554687 + HERVK3 LTR ERVK 1321 2309 -4934 2225 144 0 38 chr1 256638976 256639437 -25554227 + HERVK3 LTR ERVK 2995 5568 -377 * 461 107 27 0 chr1 256639412 256639487 -25554177 + HERVK3 LTR ERVK 5808 5884 -61 * 3167 72 16 0 chr1 256639499 256639929 -25553735 + LTR3b LTR ERVK 1 437 0 23 68 0 0 chr1 256641124 256641168 -25552496 + AT_rich Low_complexity Low_complexity 1 44 0 2171 106 10 7 chr1 256641339 256641641 -25552023 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr1 256641764 256641785 -25551879 + AT_rich Low_complexity Low_complexity 1 21 0 886 236 0 24 chr1 256643564 256643772 -25549892 + MER3 DNA MER1_type 7 209 0 260 159 0 0 chr1 256643734 256643778 -25549886 - MER3 DNA MER1_type -124 85 42 * 541 293 36 12 chr1 256644638 256644805 -25548859 - MIR3 SINE MIR -3 205 35 26 0 0 0 chr1 256645398 256645424 -25548240 + AT_rich Low_complexity Low_complexity 1 26 0 195 239 90 45 chr1 256645924 256645991 -25547673 - L2 LINE L2 -45 3227 3158 976 175 11 11 chr1 256645997 256646186 -25547478 + MER5A DNA MER1_type 1 189 0 4676 148 39 31 chr1 256646225 256646733 -25546931 - L1MB7 LINE L1 -19 6165 5663 2573 198 89 29 chr1 256646733 256647349 -25546315 + MER82 DNA MER2_type 1 653 0 4676 148 39 31 chr1 256647349 256647891 -25545773 - L1MB7 LINE L1 -521 5663 5106 681 254 11 49 chr1 256652501 256652686 -25540978 + MER5B DNA MER1_type 1 178 0 196 310 124 9 chr1 256654557 256654670 -25538994 + MIR SINE MIR 91 216 -46 270 267 67 111 chr1 256655739 256655874 -25537790 + MIR SINE MIR 59 187 -75 1378 143 34 179 chr1 256656225 256656632 -25537032 + MER7A DNA MER2_type 1 346 0 439 78 10 78 chr1 256656849 256657042 -25536622 + (TA)n Simple_repeat Simple_repeat 1 180 0 581 29 76 35 chr1 256657076 256657248 -25536416 + (TA)n Simple_repeat Simple_repeat 2 180 0 379 123 53 24 chr1 256657209 256657379 -25536285 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 2401 49 0 3 chr1 256657412 256657698 -25535966 - AluY SINE Alu -26 285 1 198 0 0 0 chr1 256658105 256658127 -25535537 + (T)n Simple_repeat Simple_repeat 1 22 0 990 235 14 5 chr1 256658179 256658422 -25535242 - AluJo SINE Alu 0 303 59 1595 199 10 3 chr1 256658578 256658870 -25534794 - AluJo SINE Alu -16 296 3 1905 162 7 0 chr1 256659152 256659461 -25534203 + AluJo SINE Alu 1 311 -1 297 85 0 0 chr1 256659461 256659502 -25534162 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 225 0 0 0 chr1 256660062 256660087 -25533577 + (T)n Simple_repeat Simple_repeat 1 25 0 2155 127 109 23 chr1 256660208 256660245 -25533419 - MSTA LTR MaLR 0 428 396 1901 119 13 36 chr1 256660245 256660547 -25533117 + AluSx SINE Alu 1 295 -17 2548 62 0 3 chr1 256660547 256660855 -25532809 + AluY SINE Alu 1 307 -4 2155 127 109 23 chr1 256660855 256661210 -25532454 - MSTA LTR MaLR -31 397 1 2293 97 0 3 chr1 256664453 256664751 -25528913 + AluSp SINE Alu 1 297 -16 1724 175 31 29 chr1 256665188 256665570 -25528094 - L1ME2 LINE L1 -3 6161 5779 692 181 0 74 chr1 256665595 256665744 -25527920 + FLAM_C SINE Alu 1 138 -5 2413 67 0 41 chr1 256666802 256667118 -25526546 + AluY SINE Alu 1 303 -8 422 272 140 47 chr1 256667250 256667700 -25525964 - L2 LINE L2 0 3313 2735 3592 123 54 81 chr1 256667711 256668468 -25525196 - L1MB3 LINE L1 0 6183 5447 614 298 76 38 chr1 256668529 256668818 -25524846 - L2 LINE L2 -630 2684 2385 1975 125 17 3 chr1 256669823 256670112 -25523552 + AluSx SINE Alu 1 293 -19 2292 102 0 0 chr1 256670318 256670638 -25523026 - AluSx SINE Alu 0 320 1 2346 75 3 0 chr1 256671031 256671323 -25522341 + AluY SINE Alu 1 293 -18 181 275 167 42 chr1 256672468 256672588 -25521076 - L2 LINE L2 0 3313 3179 756 220 7 0 chr1 256673000 256673141 -25520523 - MER3 DNA MER1_type -66 143 2 2210 72 18 0 chr1 256673357 256673660 -25520004 + AluSc SINE Alu 1 308 0 221 197 0 61 chr1 256674054 256674120 -25519544 + T-rich Low_complexity Low_complexity 4 65 0 251 172 86 0 chr1 256675181 256675239 -25518425 + L2 LINE L2 3251 3313 0 744 106 26 9 chr1 256675516 256675629 -25518035 + FLAM_C SINE Alu 1 115 -18 203 0 37 0 chr1 256675634 256675661 -25518003 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 2100 119 14 0 chr1 256675881 256676174 -25517490 - AluSx SINE Alu -15 297 1 502 229 29 0 chr1 256676192 256676297 -25517367 + Tigger5 DNA MER2_type 1 108 -2215 6433 28 21 0 chr1 256676398 256677176 -25516488 + L1PA4 LINE L1 5362 6155 0 2323 81 0 14 chr1 256677380 256677676 -25515988 + AluSp SINE Alu 3 294 -19 1389 171 4 4 chr1 256679390 256679629 -25514035 + AluJo SINE Alu 5 243 -69 463 294 163 0 chr1 256680721 256680881 -25512783 - MIR3 SINE MIR -6 202 17 214 361 9 19 chr1 256681744 256681852 -25511812 + MER5A DNA MER1_type 36 142 -47 236 395 12 6 chr1 256682228 256682390 -25511274 - L2 LINE L2 -553 2761 2599 23 0 0 0 chr1 256682585 256682608 -25511056 + AT_rich Low_complexity Low_complexity 1 23 0 451 200 100 9 chr1 256683992 256684102 -25509562 + MIR3 SINE MIR 76 195 -13 227 186 68 0 chr1 256684832 256684891 -25508773 - L1ME4a LINE L1 0 6121 6059 256 203 72 0 chr1 256685044 256685113 -25508551 - L1ME4a LINE L1 -259 5862 5789 2219 127 3 0 chr1 256685324 256685631 -25508033 - AluSq SINE Alu -4 309 2 2199 110 3 0 chr1 256685778 256686069 -25507595 - AluSq SINE Alu -21 292 1 224 149 21 0 chr1 256687550 256687597 -25506067 + (TA)n Simple_repeat Simple_repeat 1 48 0 914 187 5 39 chr1 256687912 256688115 -25505549 - L1ME3 LINE L1 -27 6135 5940 255 61 0 0 chr1 256688654 256688687 -25504977 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 966 174 53 21 chr1 256688690 256688880 -25504784 - AluJo SINE Alu -30 282 87 21 0 0 0 chr1 256689331 256689352 -25504312 + AT_rich Low_complexity Low_complexity 1 21 0 862 219 97 13 chr1 256689354 256689592 -25504072 - MIR SINE MIR -3 259 2 184 292 21 0 chr1 256690183 256690231 -25503433 + L2 LINE L2 3214 3262 -10 240 329 25 13 chr1 256690299 256690378 -25503286 + MIR SINE MIR 1 80 -182 2099 108 0 0 chr1 256690405 256690684 -25502980 - AluSc SINE Alu -13 296 18 6576 38 10 0 chr1 256690813 256692368 -25501296 - L1PA8A LINE L1 0 6131 4563 1711 148 24 17 chr1 256692383 256692673 -25500991 + AluJo SINE Alu 1 292 -20 29 0 0 0 chr1 256692673 256692702 -25500962 + AT_rich Low_complexity Low_complexity 1 29 0 * 616 118 29 59 chr1 256692681 256692817 -25500847 + L1MB8 LINE L1 6047 6178 0 216 0 0 0 chr1 256693662 256693686 -25499978 + (TG)n Simple_repeat Simple_repeat 2 25 0 2093 105 18 0 chr1 256694048 256694334 -25499330 + AluSg SINE Alu 1 291 -19 290 296 130 71 chr1 256694484 256694653 -25499011 + MIR3 SINE MIR 21 199 -9 187 327 0 0 chr1 256694775 256694830 -25498834 + L2 LINE L2 3191 3245 -68 1847 148 70 28 chr1 256695132 256695532 -25498132 - Charlie1 DNA MER1_type -1 2760 2344 340 250 0 0 chr1 256695533 256695601 -25498063 - Charlie1 DNA MER1_type -2693 68 1 2159 120 3 0 chr1 256696582 256696874 -25496790 + AluSx SINE Alu 1 293 -19 29 0 0 0 chr1 256697321 256697350 -25496314 + AT_rich Low_complexity Low_complexity 1 29 0 1603 184 13 7 chr1 256697370 256697669 -25495995 + AluSx SINE Alu 1 301 -11 314 216 66 12 chr1 256697669 256697682 -25495982 + (TA)n Simple_repeat Simple_repeat 1 12 -164 216 0 0 0 chr1 256697682 256697706 -25495958 + (GA)n Simple_repeat Simple_repeat 2 25 0 314 216 66 12 chr1 256697706 256697859 -25495805 + (TA)n Simple_repeat Simple_repeat 12 176 0 2441 129 18 5 chr1 256697877 256698272 -25495392 - L1MB3 LINE L1 -20 6163 5764 2352 72 0 33 chr1 256698616 256698923 -25494741 + AluSg SINE Alu 1 297 -13 229 297 88 22 chr1 256698953 256699044 -25494620 + L2 LINE L2 3161 3257 -56 204 44 0 67 chr1 256700293 256700338 -25493326 + (TA)n Simple_repeat Simple_repeat 2 43 0 339 268 345 18 chr1 256701600 256701768 -25491896 + MIR SINE MIR 6 228 -34 23 0 0 0 chr1 256701789 256701812 -25491852 + AT_rich Low_complexity Low_complexity 1 23 0 342 114 43 0 chr1 256701818 256701888 -25491776 + CT-rich Low_complexity Low_complexity 2 74 0 2151 121 23 0 chr1 256701893 256702198 -25491466 - AluSx SINE Alu 0 312 1 233 156 0 44 chr1 256702945 256702990 -25490674 - L2 LINE L2 -84 3229 3187 2277 109 0 3 chr1 256703052 256703346 -25490318 - AluSg SINE Alu -17 293 1 23 0 0 0 chr1 256705545 256705568 -25488096 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 256705732 256705754 -25487910 + AT_rich Low_complexity Low_complexity 1 22 0 202 296 23 57 chr1 256705800 256705888 -25487776 - L2 LINE L2 -4 3268 3184 510 266 22 94 chr1 256705892 256706109 -25487555 - MER102a DNA MER1_type -1088 329 135 2305 91 3 16 chr1 256706109 256706417 -25487247 - AluSp SINE Alu -9 304 1 510 266 22 94 chr1 256706417 256706474 -25487190 - MER102a DNA MER1_type -1282 135 75 645 248 87 0 chr1 256707364 256707525 -25486139 - MIR SINE MIR -64 198 24 564 275 179 5 chr1 256709827 256710045 -25483619 - MIR SINE MIR -2 260 5 229 26 26 26 chr1 256710262 256710301 -25483363 + (TC)n Simple_repeat Simple_repeat 2 40 0 406 177 65 24 chr1 256713823 256713947 -25479717 - L1MC5 LINE L1 -36 7925 7797 1741 170 130 3 chr1 256714777 256715101 -25478563 - MLT1A1 LTR MaLR 0 365 1 350 288 100 28 chr1 256720505 256720737 -25472927 - L3 LINE CR1 -17 1560 1265 255 279 123 25 chr1 256720929 256721051 -25472613 - L3 LINE CR1 -654 923 790 2307 108 0 0 chr1 256723455 256723760 -25469904 + AluSx SINE Alu 1 305 -7 1997 128 0 7 chr1 256725396 256725685 -25467979 + AluSx SINE Alu 5 291 -21 221 286 132 0 chr1 256726337 256726428 -25467236 - L2 LINE L2 -2 3311 3209 307 324 166 17 chr1 256726690 256727039 -25466625 + L1MC4a LINE L1 5494 5894 -1914 23 33 0 0 chr1 256727124 256727154 -25466510 + AT_rich Low_complexity Low_complexity 1 30 0 285 163 0 0 chr1 256727205 256727254 -25466410 - MER83B LTR ERV1 -104 274 226 510 262 49 12 chr1 256727387 256727551 -25466113 - MIR SINE MIR -55 207 38 387 335 35 18 chr1 256727895 256728065 -25465599 + LTR67 LTR ERVL 2 174 -383 2228 99 0 16 chr1 256728091 256728394 -25465270 + AluSc SINE Alu 1 298 -11 425 250 105 29 chr1 256728468 256728640 -25465024 + LTR67 LTR ERVL 373 557 0 2216 113 3 0 chr1 256729084 256729385 -25464279 - AluSx SINE Alu -10 302 1 243 94 0 0 chr1 256729596 256729628 -25464036 + MER4A LTR ERV1 610 641 -23 302 286 109 78 chr1 256730240 256730534 -25463130 - L1M2 LINE L1 -6079 770 468 2902 66 20 0 chr1 256730865 256731213 -25462451 - THE1A LTR MaLR 0 355 1 512 250 81 0 chr1 256732022 256732158 -25461506 + MER3 DNA MER1_type 63 209 0 311 301 146 0 chr1 256732167 256732270 -25461394 - MER5A DNA MER1_type 0 189 72 189 0 0 0 chr1 256732423 256732444 -25461220 + (CATTC)n Simple_repeat Simple_repeat 3 23 0 1455 176 37 107 chr1 256732451 256732519 -25461145 - MER7A DNA MER2_type -2692 346 275 4007 110 52 3 chr1 256732519 256733101 -25460563 + MER4B LTR ERV1 1 610 0 1455 176 37 107 chr1 256733101 256733406 -25460258 - MER7A DNA MER2_type -2763 275 1 291 224 93 28 chr1 256733532 256733639 -25460025 + MIR SINE MIR 85 198 -64 183 321 12 36 chr1 256734679 256734763 -25458901 + L2 LINE L2 3045 3126 -146 2202 123 0 0 chr1 256734817 256735110 -25458554 - AluSx SINE Alu -19 293 1 185 91 0 30 chr1 256735305 256735338 -25458326 + (TC)n Simple_repeat Simple_repeat 2 33 0 431 189 0 0 chr1 256737195 256737269 -25456395 - MER4A LTR ERV1 -218 446 373 3614 62 0 9 chr1 256737270 256737722 -25455942 - LTR7 LTR ERV1 -2 448 1 2663 72 45 0 chr1 256737722 256738097 -25455567 - HERVH LTR ERV1 0 7713 7322 1423 134 19 0 chr1 256738095 256738311 -25455353 - HERVH LTR ERV1 -1894 5819 5600 * 4153 158 9 1 chr1 256738312 256738969 -25454695 - HERVH LTR ERV1 -2564 5149 4488 3435 117 0 6 chr1 256738971 256739476 -25454188 - HERVH LTR ERV1 -3720 3993 3492 1003 113 7 0 chr1 256739466 256739616 -25454048 - HERVH LTR ERV1 -4423 3290 3140 * 20480 89 20 11 chr1 256739610 256742571 -25451093 - HERVH LTR ERV1 -4726 2987 1 3657 53 0 15 chr1 256742573 256743028 -25450636 - LTR7 LTR ERV1 -2 448 1 288 180 20 0 chr1 256743035 256743085 -25450579 - MER4A LTR ERV1 -351 313 263 667 111 0 10 chr1 256743085 256743184 -25450480 - MER4A LTR ERV1 -566 98 1 1403 177 82 19 chr1 256743184 256743778 -25449886 - LTR8A LTR ERV1 -55 672 1 575 206 44 0 chr1 256743812 256743948 -25449716 - MER5B DNA MER1_type -36 142 1 880 202 12 0 chr1 256745157 256745325 -25448339 + MIR SINE MIR 23 192 -70 4286 82 11 0 chr1 256745458 256746006 -25447658 + MER41A LTR ERV1 1 554 0 1710 200 6 16 chr1 256746240 256746475 -25447189 + AluJo SINE Alu 1 234 -78 3590 163 64 26 chr1 256746475 256747175 -25446489 - LTR8A LTR ERV1 0 727 1 1710 200 6 16 chr1 256747175 256747254 -25446410 + AluJo SINE Alu 234 312 0 467 266 101 6 chr1 256747410 256747579 -25446085 + MER63A DNA MER1_type 1 185 -25 2362 176 22 122 chr1 256747696 256747827 -25445837 - LTR9 LTR ERV1 0 612 469 2433 75 3 10 chr1 256747827 256748132 -25445532 + AluY SINE Alu 1 303 -8 2362 176 22 122 chr1 256748132 256748680 -25444984 - LTR9 LTR ERV1 -142 470 1 270 103 0 0 chr1 256750126 256750165 -25443499 - LTR1B LTR ERV1 0 826 788 2730 189 108 50 chr1 256750175 256750916 -25442748 - LTR1 LTR ERV1 0 785 2 535 201 126 38 chr1 256752137 256752296 -25441368 - MER96 DNA MER1_type -2 173 1 219 163 61 0 chr1 256752552 256752601 -25441063 + L2 LINE L2 2622 2673 -641 500 241 21 28 chr1 256752772 256752917 -25440747 + MLT1I LTR MaLR 64 207 -202 484 315 186 35 chr1 256753160 256753626 -25440038 - L2 LINE L2 -32 3281 2887 2301 132 0 0 chr1 256753626 256753937 -25439727 - AluSx SINE Alu -1 311 1 484 315 186 35 chr1 256753937 256754193 -25439471 - L2 LINE L2 -426 2887 2434 2329 99 7 3 chr1 256755002 256755306 -25438358 + AluSc SINE Alu 5 309 0 2046 151 0 3 chr1 256755600 256755898 -25437766 + AluSx SINE Alu 2 298 -14 244 299 24 24 chr1 256756051 256756178 -25437486 - L1ME LINE L1 -342 5822 5696 2278 114 10 0 chr1 256756221 256756529 -25437135 + AluSx SINE Alu 2 312 0 232 116 70 0 chr1 256756534 256756577 -25437087 - LTR37A LTR ERV1 -68 358 313 1290 169 0 5 chr1 256756716 256756923 -25436741 + AluSq SINE Alu 86 291 -22 320 213 78 106 chr1 256756923 256757107 -25436557 + L1MEd LINE L1 680 868 -5251 2015 146 3 7 chr1 256757107 256757409 -25436255 + AluSg SINE Alu 1 301 -9 212 0 36 0 chr1 256757413 256757441 -25436223 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 320 213 78 106 chr1 256757441 256757646 -25436018 + L1MEd LINE L1 871 1063 -5056 976 106 5 144 chr1 256757651 256757839 -25435825 + AluJb SINE Alu 6 167 -145 1247 122 0 0 chr1 256757847 256758027 -25435637 + THE1B LTR MaLR 58 237 -127 858 110 0 0 chr1 256758029 256758147 -25435517 + AluJb SINE Alu 191 308 -4 559 215 29 49 chr1 256758148 256758353 -25435311 + L1MEd LINE L1 1057 1257 -4862 2687 106 0 14 chr1 256759364 256759733 -25433931 - THE1B LTR MaLR 0 364 1 1569 180 96 36 chr1 256759739 256760156 -25433508 + MLT1C LTR MaLR 26 467 0 2340 200 20 73 chr1 256760267 256760852 -25432812 - MLT2B3 LTR ERVL 0 554 1 2230 119 0 13 chr1 256761296 256761608 -25432056 - AluSc SINE Alu -1 308 1 2626 101 19 47 chr1 256762683 256762926 -25430738 + MER57B LTR ERV1 20 247 -187 2404 61 0 7 chr1 256762926 256763220 -25430444 - AluY SINE Alu -14 297 6 2626 101 19 47 chr1 256763220 256763403 -25430261 + MER57B LTR ERV1 247 434 0 886 279 123 42 chr1 256763469 256763618 -25430046 - MER115 DNA AcHobo -19 674 538 1659 185 0 18 chr1 256763618 256763904 -25429760 - AluJo SINE Alu -31 281 1 2192 117 3 0 chr1 256763913 256764204 -25429460 - AluSx SINE Alu -20 292 1 886 279 123 42 chr1 256764204 256764663 -25429001 - MER115 DNA AcHobo -162 531 6 243 0 0 0 chr1 256765222 256765249 -25428415 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 281 182 325 0 chr1 256765780 256765857 -25427807 - MIR3 SINE MIR -14 194 93 2437 100 13 26 chr1 256766044 256766424 -25427240 + THE1C LTR MaLR 1 375 0 3772 262 144 10 chr1 256766632 256768113 -25425551 + L2 LINE L2 155 1833 -1481 189 0 0 0 chr1 256768126 256768147 -25425517 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 578 238 6 55 chr1 256768166 256768347 -25425317 - L1ME3 LINE L1 -22 6140 5969 839 168 54 0 chr1 256769241 256769408 -25424256 + AluSp SINE Alu 11 186 -127 198 0 0 0 chr1 256770467 256770489 -25423175 + (A)n Simple_repeat Simple_repeat 1 22 0 2141 127 0 3 chr1 256770626 256770944 -25422720 + AluSq SINE Alu 1 317 0 302 286 70 85 chr1 256770953 256771152 -25422512 - HAL1 LINE L1 -904 1603 1408 2872 136 16 0 chr1 256771153 256771580 -25422084 - MER57B LTR ERV1 0 434 1 1484 72 118 25 chr1 256771580 256771817 -25421847 - MER57B-int LTR ERV1 0 7537 7279 712 102 23 31 chr1 256771817 256771945 -25421719 - LTR54B LTR ERV1 -367 131 5 10955 108 44 34 chr1 256771947 256773724 -25419940 - MER57B-int LTR ERV1 -389 7148 5355 1065 217 168 39 chr1 256773930 256774317 -25419347 + L2 LINE L2 2876 3312 -1 1753 193 0 3 chr1 256774411 256774711 -25418953 - AluJb SINE Alu -13 299 1 278 311 32 60 chr1 256774787 256774995 -25418669 - L1ME3 LINE L1 -302 5819 5618 1154 182 15 5 chr1 256774995 256775198 -25418466 + MER3 DNA MER1_type 5 209 0 278 311 32 60 chr1 256775198 256775240 -25418424 - L1ME3 LINE L1 -503 5618 5576 1684 195 3 3 chr1 256775244 256775526 -25418138 + AluJo SINE Alu 1 282 -30 2098 129 0 3 chr1 256776077 256776371 -25417293 + AluSg SINE Alu 1 293 -17 539 303 25 23 chr1 256776808 256777110 -25416554 + LTR16B LTR ERVL 104 442 -8 328 219 48 9 chr1 256777289 256777394 -25416270 - MER103 DNA DNA -57 109 1 561 193 60 72 chr1 256777538 256777704 -25415960 - L1ME3 LINE L1 -3 6159 5996 452 262 32 5 chr1 256777731 256777918 -25415746 - L1ME3 LINE L1 -825 5321 5130 1827 188 0 3 chr1 256777924 256778212 -25415452 - AluJb SINE Alu -25 287 1 2248 120 3 0 chr1 256778220 256778529 -25415135 - AluSg SINE Alu 0 310 1 285 254 0 0 chr1 256778567 256778626 -25415038 - L1ME3 LINE L1 -2017 4129 4071 342 262 1 128 chr1 256779124 256779218 -25414446 - L1ME3 LINE L1 -747 5399 5295 2311 94 3 0 chr1 256779218 256779504 -25414160 - AluSc SINE Alu -22 287 1 2307 73 0 0 chr1 256779510 256779785 -25413879 - AluSp SINE Alu -2 311 37 342 262 1 128 chr1 256779785 256779835 -25413829 - L1ME3 LINE L1 -856 5290 5299 2413 100 7 7 chr1 256779835 256780145 -25413519 - AluSx SINE Alu -2 310 1 342 262 1 128 chr1 256780145 256780185 -25413479 - L1ME3 LINE L1 -846 5300 5257 259 353 82 33 chr1 256780473 256780657 -25413007 + L3 LINE CR1 1368 1560 -17 243 189 136 106 chr1 256780737 256780869 -25412795 + MIR SINE MIR 79 214 -48 478 274 60 30 chr1 256781484 256781652 -25412012 + MIR SINE MIR 57 229 -33 1702 182 16 33 chr1 256782483 256782790 -25410874 + AluJb SINE Alu 1 302 -10 234 0 0 0 chr1 256783224 256783250 -25410414 + (T)n Simple_repeat Simple_repeat 1 26 0 3976 94 20 0 chr1 256783915 256784458 -25409206 + MER41A LTR ERV1 1 554 0 203 324 88 0 chr1 256784607 256784709 -25408955 + L2 LINE L2 3203 3313 0 2037 148 14 0 chr1 256785287 256785584 -25408080 + AluSx SINE Alu 1 301 -11 246 100 380 0 chr1 256785761 256785811 -25407853 + Alu SINE Alu 155 189 -112 839 254 112 37 chr1 256786241 256786615 -25407049 - MLT1J2 LTR MaLR 0 450 49 194 321 0 0 chr1 256787045 256787098 -25406566 - L2 LINE L2 0 3313 3261 197 350 114 14 chr1 256787127 256787238 -25406426 + MIR3 SINE MIR 48 177 -31 1222 187 9 14 chr1 256787238 256787457 -25406207 + MER20 DNA MER1_type 1 218 -1 197 350 114 14 chr1 256787457 256787485 -25406179 + MIR3 SINE MIR 177 201 -7 340 268 18 110 chr1 256787933 256788097 -25405567 - L2 LINE L2 0 3313 3165 2384 99 0 0 chr1 256788146 256788450 -25405214 - AluSx SINE Alu -8 304 1 2640 194 79 50 chr1 256789435 256790141 -25403523 - LTR8A LTR ERV1 0 727 1 280 271 31 21 chr1 256790203 256790299 -25403365 + MIR SINE MIR 40 136 -126 266 322 76 17 chr1 256790957 256791075 -25402589 - MIR SINE MIR -94 168 44 2074 113 17 30 chr1 256792600 256792901 -25400763 + AluSx SINE Alu 1 297 -15 342 295 124 26 chr1 256793748 256793941 -25399723 + L3 LINE CR1 1275 1486 -91 1157 271 111 35 chr1 256994357 256994932 -25198732 - L3 LINE CR1 -8 1569 951 209 81 0 27 chr1 256994935 256994972 -25198692 + (TTA)n Simple_repeat Simple_repeat 3 38 0 43369 38 22 1 chr1 256994972 257000979 -25192685 - L1PA3 LINE L1 -18 6137 3 3814 148 27 0 chr1 257001611 257002281 -25191383 - L1MB2 LINE L1 0 6171 5484 295 173 25 12 chr1 257002418 257002499 -25191165 + CT-rich Low_complexity Low_complexity 3 84 0 1446 134 10 12 chr1 257002501 257002872 -25190792 - L1MB2 LINE L1 -710 5470 5098 299 193 0 102 chr1 257003075 257003163 -25190501 - MER103 DNA DNA -77 89 11 954 281 147 20 chr1 257003294 257003689 -25189975 - MLT1H LTR MaLR -104 445 1 1006 254 102 76 chr1 257004016 257004571 -25189093 - MER115 DNA AcHobo -2 4029 3490 2410 87 27 16 chr1 257004571 257004938 -25188726 - THE1C LTR MaLR -4 371 1 1006 254 102 76 chr1 257004938 257005047 -25188617 - MER115 DNA AcHobo -541 3490 5 1468 231 96 42 chr1 257005418 257005876 -25187788 + L1ME1 LINE L1 5675 6157 -9 1326 142 3 133 chr1 257006897 257007228 -25186436 + MLT1B LTR MaLR 103 390 0 381 289 186 12 chr1 257007331 257007573 -25186091 + MLT1L LTR MaLR 326 609 -6 805 207 30 18 chr1 257007960 257008309 -25185355 + AluJo SINE Alu 125 475 0 666 302 83 49 chr1 257008516 257008963 -25184701 + MLT1K LTR MaLR 102 563 -25 1183 231 36 30 chr1 257008993 257009069 -25184595 - MER46C DNA MER2_type 0 338 264 1503 176 90 35 chr1 257009069 257009415 -25184249 - MLT1A1 LTR MaLR 0 365 1 1183 231 36 30 chr1 257009415 257009672 -25183992 - MER46C DNA MER2_type -74 264 3 3027 222 64 15 chr1 257010536 257011289 -25182375 + MER21B LTR ERV1 13 802 -61 1452 239 95 16 chr1 257011525 257011955 -25181709 + LTR16B LTR ERVL 1 464 0 1754 173 81 17 chr1 257013233 257013580 -25180084 - LTR26E LTR ERV1 -253 369 1 672 217 56 0 chr1 257013580 257013741 -25179923 - L1ME3A LINE L1 -182 5988 5819 2126 111 0 3 chr1 257013741 257014029 -25179635 - AluSg SINE Alu -11 299 13 2255 104 3 7 chr1 257014042 257014349 -25179315 - AluSx SINE Alu -6 306 1 619 239 40 135 chr1 257014351 257014908 -25178756 + L2 LINE L2 2778 3288 -25 2529 164 60 46 chr1 257014912 257015412 -25178252 - MLT2B2 LTR ERVL -2 513 7 2578 149 5 5 chr1 257017604 257018000 -25175664 + MSTD LTR MaLR 1 396 0 2690 133 2 18 chr1 257018292 257018744 -25174920 + L1MB3 LINE L1 5738 6182 -1 470 283 205 16 chr1 257018766 257019010 -25174654 + L2 LINE L2 3022 3311 -2 1277 264 93 29 chr1 257019261 257019753 -25173911 - MLT1L LTR MaLR -10 605 82 1065 113 2 48 chr1 257020045 257020255 -25173409 + L1MC1 LINE L1 5826 6030 -314 895 296 81 47 chr1 257020273 257020865 -25172799 - L2 LINE L2 -551 2763 2152 306 319 33 39 chr1 257020864 257021046 -25172618 + MIR SINE MIR 72 252 -10 * 206 61 0 30 chr1 257021293 257021326 -25172338 + (GGGTG)n Simple_repeat Simple_repeat 3 34 0 282 339 18 32 chr1 257021486 257021704 -25171960 - L2 LINE L2 -939 2375 2161 368 296 105 0 chr1 257021818 257021970 -25171694 + MIR SINE MIR 94 261 -1 1148 211 47 58 chr1 257022793 257023350 -25170314 - L1MD3 LINE L1 0 7995 7381 5871 66 17 4 chr1 257023350 257024106 -25169558 + MER4E LTR ERV1 1 766 0 1148 211 47 58 chr1 257024106 257024417 -25169247 - L1MD3 LINE L1 -614 7381 7068 287 339 79 18 chr1 257026318 257026545 -25167119 + MIR SINE MIR 8 248 -14 252 86 0 0 chr1 257027612 257027647 -25166017 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1858 167 7 0 chr1 257028146 257028433 -25165231 - AluJb SINE Alu -14 298 10 373 343 33 33 chr1 257028523 257028736 -25164928 - MIR SINE MIR -46 216 4 1302 235 37 13 chr1 257028743 257029100 -25164564 - L1ME3A LINE L1 -150 6003 5638 272 181 48 72 chr1 257029100 257029183 -25164481 - L1ME3A LINE L1 -1911 4218 4138 229 684 7 0 chr1 257029183 257029338 -25164326 + polypyrimidine Low_complexity Low_complexity 2 157 0 1857 167 0 6 chr1 257029342 257029653 -25164011 - AluSx SINE Alu -3 309 1 989 276 82 48 chr1 257029654 257030113 -25163551 - L1ME3A LINE L1 -2059 4070 3571 1790 147 3 42 chr1 257030113 257030420 -25163244 - AluJo SINE Alu -8 304 10 989 276 82 48 chr1 257030420 257030769 -25162895 - L1ME3A LINE L1 -2558 3571 3235 1601 185 91 0 chr1 257030771 257031002 -25162662 - AluJb SINE Alu 0 350 83 474 111 83 0 chr1 257031002 257031074 -25162590 - L1PA11 LINE L1 -4 6170 6093 1601 185 91 0 chr1 257031074 257031166 -25162498 - AluJb SINE Alu -267 83 1 933 285 78 14 chr1 257031243 257031758 -25161906 - L1ME3A LINE L1 -2897 3232 2685 276 311 158 25 chr1 257031808 257032213 -25161451 - L1ME3A LINE L1 -3555 2574 2116 1402 142 39 13 chr1 257032478 257032711 -25160953 - L1PB3 LINE L1 0 6154 5916 640 274 70 31 chr1 257032883 257033535 -25160129 - L1MEd LINE L1 -863 1627 945 2646 87 0 3 chr1 257033700 257034045 -25159619 - MER41A LTR ERV1 -210 344 1 449 244 15 9 chr1 257034213 257034343 -25159321 + MIR SINE MIR 11 145 -63 2334 162 5 56 chr1 257035345 257035983 -25157681 - LTR8A LTR ERV1 0 727 34 2504 94 33 22 chr1 257036167 257036527 -25157137 - THE1B LTR MaLR 0 364 1 231 288 76 23 chr1 257036747 257036879 -25156785 - MIR SINE MIR -62 200 62 4267 108 13 8 chr1 257036882 257037496 -25156168 - MER41B LTR ERV1 -18 617 1 1069 249 98 49 chr1 257037496 257037906 -25155758 - MER21B LTR ERV1 -301 562 133 231 204 61 0 chr1 257037877 257037926 -25155738 - MER77 LTR ERV1 -393 212 161 * 518 190 119 109 chr1 257040310 257040621 -25153043 - L1ME4a LINE L1 0 6121 5808 410 347 37 16 chr1 257042260 257042450 -25151214 + MIR3 SINE MIR 15 208 0 3240 95 17 0 chr1 257042493 257042914 -25150750 - MSTA LTR MaLR 0 428 1 246 200 0 0 chr1 257043633 257043683 -25149981 + MIR SINE MIR 161 210 -52 730 151 71 16 chr1 257043886 257044012 -25149652 + AluJb SINE Alu 2 134 -178 224 311 23 68 chr1 257044044 257044176 -25149488 - MIR3 SINE MIR -9 199 74 1921 154 0 3 chr1 257044262 257044548 -25149116 + AluJb SINE Alu 11 295 -17 576 0 0 0 chr1 257046187 257046251 -25147413 + (TA)n Simple_repeat Simple_repeat 2 65 0 547 252 16 8 chr1 257046251 257046378 -25147286 - MIR SINE MIR -134 128 1 592 267 94 0 chr1 257046430 257046632 -25147032 + MER112 DNA MER1_type 2 222 -38 2742 43 3 0 chr1 257046632 257046955 -25146709 + MER11D LTR ERVK 1 324 -573 654 279 74 7 chr1 257047113 257047382 -25146282 - L1MEd LINE L1 -5267 852 566 322 221 117 78 chr1 257047958 257048112 -25145552 + MLT1K LTR MaLR 206 365 -223 1354 85 0 0 chr1 257048978 257049143 -25144521 - AluSg/x SINE Alu -16 296 132 865 257 47 20 chr1 257049363 257049616 -25144048 - MIR SINE MIR 0 262 3 515 284 44 64 chr1 257049639 257049889 -25143775 + MIR SINE MIR 10 254 -8 4751 208 90 28 chr1 257050502 257050898 -25142766 - L1MD1 LINE L1 -9 6627 6257 2287 83 28 0 chr1 257050898 257051186 -25142478 + AluSq SINE Alu 1 296 -17 4751 208 90 28 chr1 257051186 257053556 -25140108 - L1MD1 LINE L1 -379 6257 3493 2204 232 90 33 chr1 257053664 257054516 -25139148 - L1M4 LINE L1 -2752 3394 2494 1002 177 0 22 chr1 257054516 257054697 -25138967 - AluSg/x SINE Alu -1 311 135 552 262 35 12 chr1 257054697 257054869 -25138795 - L1M4 LINE L1 -3641 2505 2330 245 196 39 0 chr1 257054870 257054921 -25138743 - L1M4 LINE L1 -909 5237 5185 4270 221 74 44 chr1 257054927 257056459 -25137205 - L1MD1 LINE L1 -4817 1723 35 533 296 60 20 chr1 257056976 257057175 -25136489 - MIR SINE MIR -16 246 40 1984 154 89 9 chr1 257057904 257058241 -25135423 - THE1B LTR MaLR 0 364 1 493 180 81 0 chr1 257058429 257058540 -25135124 + MER103 DNA DNA 36 155 -11 43598 34 23 1 chr1 257058817 257064841 -25128823 + L1PA2 LINE L1 3 6155 0 325 267 135 119 chr1 257066370 257067111 -25126553 + L1M2 LINE L1 514 1266 -5583 286 354 96 26 chr1 257067699 257067928 -25125736 + MIR SINE MIR 12 256 -6 1685 164 25 7 chr1 257067968 257068254 -25125410 + AluJo SINE Alu 1 291 -21 198 175 32 95 chr1 257068381 257068444 -25125220 + MIR SINE MIR 60 118 -90 2016 181 54 9 chr1 257068446 257068795 -25124869 + MLT1A1 LTR MaLR 1 365 0 346 241 73 84 chr1 257069531 257069772 -25123892 + MIR SINE MIR 33 260 -2 272 297 89 38 chr1 257070161 257070397 -25123267 - L2 LINE L2 -221 3051 2804 1176 199 53 44 chr1 257071579 257071900 -25121764 + MER33 DNA MER1_type 1 324 0 2325 110 0 0 chr1 257072075 257072383 -25121281 - AluSx SINE Alu -4 308 1 1686 174 24 3 chr1 257072390 257072684 -25120980 - AluJb SINE Alu -2 310 11 192 315 247 12 chr1 257073124 257073286 -25120378 - MIR SINE MIR -16 246 47 24 0 0 0 chr1 257073770 257073794 -25119870 + AT_rich Low_complexity Low_complexity 1 24 0 249 183 430 11 chr1 257074494 257074587 -25119077 + L2 LINE L2 3181 3312 -1 2205 107 3 0 chr1 257074613 257074903 -25118761 + AluY SINE Alu 8 298 -13 2246 113 0 19 chr1 257074915 257075233 -25118431 + AluSx SINE Alu 1 312 0 1072 197 35 0 chr1 257075683 257075881 -25117783 + MER3 DNA MER1_type 1 205 -4 359 300 90 67 chr1 257075884 257076107 -25117557 + MIR SINE MIR 17 244 -18 535 302 39 17 chr1 257076170 257076402 -25117262 - MER112 DNA MER1_type -11 249 13 1665 179 7 24 chr1 257076615 257076912 -25116752 - AluJb SINE Alu -20 292 1 824 218 57 5 chr1 257076966 257077177 -25116487 + MLT1F LTR MaLR 14 235 -307 670 181 199 23 chr1 257077186 257077357 -25116307 + MLT1F LTR MaLR 359 559 -8 220 344 39 70 chr1 257077380 257077508 -25116156 + MER5A DNA MER1_type 66 189 0 * 334 355 82 37 chr1 257077508 257078076 -25115588 + L2 LINE L2 2066 2659 -655 1685 87 17 4 chr1 257078145 257078375 -25115289 - L1P4 LINE L1 -394 5774 5542 2488 55 6 6 chr1 257078399 257078710 -25114954 + L1PA10 LINE L1 5776 6086 -82 2531 115 8 32 chr1 257079140 257079291 -25114373 + THE1B LTR MaLR 1 154 -210 2236 97 6 25 chr1 257079291 257079610 -25114054 + AluSq SINE Alu 1 313 0 2531 115 8 32 chr1 257079610 257079831 -25113833 + THE1B LTR MaLR 154 364 0 600 221 31 8 chr1 257080145 257080272 -25113392 + L2 LINE L2 3180 3309 -4 188 350 186 0 chr1 257080324 257080421 -25113243 + L2 LINE L2 3153 3267 -5 196 376 0 30 chr1 257081046 257081147 -25112517 - L2 LINE L2 -42 3230 3133 404 234 21 135 chr1 257081295 257081487 -25112177 + MLT1J2 LTR MaLR 3 172 -278 325 150 75 8 chr1 257081532 257081652 -25112012 + (TA)n Simple_repeat Simple_repeat 1 128 0 * 378 202 11 58 chr1 257081597 257081846 -25111818 + (TTATA)n Simple_repeat Simple_repeat 1 237 0 190 130 65 22 chr1 257081861 257081953 -25111711 + (TA)n Simple_repeat Simple_repeat 1 96 0 1971 154 118 47 chr1 257081955 257082378 -25111286 + MER74C LTR ERVL 8 460 0 336 195 45 143 chr1 257082535 257082689 -25110975 + MLT1J1 LTR MaLR 287 425 -21 471 241 89 42 chr1 257083211 257083503 -25110161 - L1ME4a LINE L1 -139 5982 5684 325 322 52 9 chr1 257083504 257083619 -25110045 - MIR SINE MIR -14 248 129 2505 73 0 0 chr1 257083695 257083996 -25109668 - AluSc SINE Alu -8 301 1 2128 180 87 30 chr1 257084019 257084430 -25109234 - MER74A LTR ERVL 0 558 109 2243 77 0 3 chr1 257084430 257084729 -25108935 - AluY SINE Alu -13 298 1 2128 180 87 30 chr1 257084729 257084845 -25108819 - MER74A LTR ERVL -449 109 1 452 283 68 23 chr1 257084851 257085028 -25108636 - L1ME4a LINE L1 -616 5550 5366 337 297 194 57 chr1 257085074 257085310 -25108354 + L2 LINE L2 2740 2942 -330 324 0 0 0 chr1 257085310 257085346 -25108318 + (CA)n Simple_repeat Simple_repeat 2 37 0 337 297 194 57 chr1 257085346 257085567 -25108097 + L2 LINE L2 2942 3250 -22 725 230 47 85 chr1 257085984 257086421 -25107243 + MLT1J LTR MaLR 31 481 -30 245 281 44 18 chr1 257086462 257086576 -25107088 + L2 LINE L2 3102 3218 -95 437 136 30 0 chr1 257086578 257086644 -25107020 - U4 snRNA snRNA -77 68 1 458 235 31 10 chr1 257086644 257086742 -25106922 + L2 LINE L2 3209 3308 -5 2381 149 8 5 chr1 257087340 257087729 -25105935 + MLT1B LTR MaLR 1 390 0 45076 38 2 2 chr1 257087778 257093943 -25099721 + L1PA3 LINE L1 9 6174 0 1387 273 111 35 chr1 257093946 257094521 -25099143 + L3 LINE CR1 951 1569 -8 21 89 0 0 chr1 257095777 257095833 -25097831 + GC_rich Low_complexity Low_complexity 1 56 0 275 276 31 25 chr1 257095981 257096144 -25097520 + C-rich Low_complexity Low_complexity 6 169 0 33 25 0 0 chr1 257096163 257096203 -25097461 + GC_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr1 257096866 257096888 -25096776 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 257097085 257097107 -25096557 + (CAG)n Simple_repeat Simple_repeat 2 23 0 186 118 0 0 chr1 257097507 257097541 -25096123 + (G)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr1 257098398 257098430 -25095234 + AT_rich Low_complexity Low_complexity 1 32 0 687 188 130 0 chr1 257099326 257099485 -25094179 - MER5A DNA MER1_type -2 187 5 432 219 188 0 chr1 257100308 257100436 -25093228 + MIR SINE MIR 63 214 -48 224 151 75 94 chr1 257100499 257100552 -25093112 - L2 LINE L2 -1 3271 3220 418 347 24 0 chr1 257100735 257100859 -25092805 + L2 LINE L2 3177 3303 -10 203 411 27 15 chr1 257101052 257101315 -25092349 - L2 LINE L2 -337 2977 2712 240 35 0 0 chr1 257102192 257102221 -25091443 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 646 272 20 31 chr1 257102799 257102994 -25090670 - MIR SINE MIR 0 262 70 967 195 0 0 chr1 257103877 257104062 -25089602 + AluJo SINE Alu 122 306 -6 1169 147 179 52 chr1 257104948 257105093 -25088571 + AluJb SINE Alu 1 126 -185 2135 112 0 0 chr1 257105093 257105387 -25088277 + AluSx SINE Alu 1 294 -18 1169 147 179 52 chr1 257105387 257105520 -25088144 + AluJb SINE Alu 126 311 0 888 119 0 33 chr1 257106400 257106551 -25087113 - AluSp/q SINE Alu 0 313 168 286 238 0 86 chr1 257106912 257107017 -25086647 + MIR SINE MIR 76 171 -91 745 271 25 10 chr1 257109273 257109476 -25084188 + MIR SINE MIR 50 255 -7 385 229 57 9 chr1 257110123 257110228 -25083436 - L2 LINE L2 -3 3310 3201 1481 197 83 33 chr1 257110257 257110618 -25083046 - MLT1B LTR MaLR -11 379 1 317 278 65 9 chr1 257110672 257110780 -25082884 - L2 LINE L2 -194 3078 2965 219 137 59 39 chr1 257110875 257110926 -25082738 - L2 LINE L2 0 3272 3221 223 250 50 38 chr1 257112021 257112101 -25081563 - L2 LINE L2 -10 3262 3182 470 247 147 0 chr1 257112441 257112591 -25081073 - MIR3 SINE MIR -18 190 19 278 274 17 60 chr1 257112584 257112701 -25080963 + MIR SINE MIR 108 219 -43 * 214 293 35 0 chr1 257113023 257113081 -25080583 - L2 LINE L2 -211 3061 3002 1886 109 29 26 chr1 257113087 257113398 -25080266 + L1MA2 LINE L1 5993 6304 0 186 167 0 0 chr1 257113442 257113478 -25080186 + L2 LINE L2 3277 3312 -1 801 293 35 13 chr1 257113674 257113903 -25079761 - MIR SINE MIR -2 260 27 287 296 178 47 chr1 257114172 257114226 -25079438 - L2 LINE L2 -562 2752 2706 899 203 14 40 chr1 257114226 257114448 -25079216 + MER20 DNA MER1_type 4 219 0 287 296 178 47 chr1 257114448 257114859 -25078805 - L2 LINE L2 -608 2706 2226 370 268 21 21 chr1 257115020 257115117 -25078547 + MIR SINE MIR 35 131 -131 432 270 47 50 chr1 257116824 257117016 -25076648 - L1ME4a LINE L1 -209 5912 5762 563 288 73 52 chr1 257117059 257117386 -25076278 - L2 LINE L2 -118 3195 2862 335 255 144 48 chr1 257117387 257117575 -25076089 - L1ME4a LINE L1 -759 5387 5182 685 292 98 13 chr1 257117625 257118156 -25075508 - L1ME4a LINE L1 -1039 5107 4487 205 320 96 16 chr1 257118441 257118566 -25075098 - MIR SINE MIR -32 230 96 234 367 31 0 chr1 257120719 257120847 -25072817 - MER5A DNA MER1_type -22 167 36 847 321 172 22 chr1 257120988 257121964 -25071700 + L2 LINE L2 1613 2734 -580 237 33 0 0 chr1 257123083 257123113 -25070551 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 226 254 16 48 chr1 257123606 257123669 -25069995 - L2 LINE L2 -9 3304 3244 225 286 41 20 chr1 257123655 257123753 -25069911 + MIR3 SINE MIR 7 106 -102 * 422 247 128 70 chr1 257123970 257124213 -25069451 - HAL1 LINE L1 -104 2403 2147 1237 73 6 6 chr1 257124213 257124377 -25069287 + AluSp SINE Alu 1 164 -149 551 281 104 54 chr1 257124377 257124818 -25068846 - HAL1 LINE L1 -357 2150 1688 2037 248 142 67 chr1 257124994 257125112 -25068552 - HAL1 LINE L1 -818 1689 1581 4481 70 6 50 chr1 257125112 257125770 -25067894 + L1PB1 LINE L1 5522 6150 -1 2037 248 142 67 chr1 257125770 257127022 -25066642 - HAL1 LINE L1 -926 1581 1 504 260 85 9 chr1 257127044 257127267 -25066397 - MIR SINE MIR -10 252 13 201 254 0 0 chr1 257130426 257130497 -25063167 + (TCCA)n Simple_repeat Simple_repeat 3 73 0 771 201 0 0 chr1 257130519 257130698 -25062966 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 201 237 0 0 chr1 257130754 257130813 -25062851 + (TCCA)n Simple_repeat Simple_repeat 4 62 0 398 260 111 28 chr1 257132087 257132268 -25061396 + MIR SINE MIR 42 237 -25 207 253 107 9 chr1 257132690 257132824 -25060840 + MER91 DNA MER1_type 44 190 0 5934 158 24 3 chr1 257132977 257134956 -25058708 - L1PB3 LINE L1 -2 6152 4131 262 333 0 0 chr1 257136276 257136339 -25057325 - L2 LINE L2 -13 3259 3197 374 157 39 10 chr1 257137186 257137288 -25056376 + CT-rich Low_complexity Low_complexity 3 107 0 223 104 42 0 chr1 257137806 257137854 -25055810 + (CA)n Simple_repeat Simple_repeat 2 51 0 1995 206 52 7 chr1 257138119 257138348 -25055316 + Charlie4a DNA MER1_type 28 245 -1716 1516 169 0 0 chr1 257138348 257138584 -25055080 + MER46A DNA MER2_type 1 236 0 1995 206 52 7 chr1 257138584 257138814 -25054850 + Charlie4a DNA MER1_type 245 508 0 780 239 34 5 chr1 257138976 257139185 -25054479 - MIR SINE MIR -1 261 47 321 244 41 41 chr1 257140474 257140597 -25053067 - MIR SINE MIR -129 133 11 41049 53 1 5 chr1 257141008 257146103 -25047561 - L1P LINE L1 -847 5299 227 4268 57 51 0 chr1 257146203 257146730 -25046934 + MER11D LTR ERVK 344 897 0 1304 165 0 62 chr1 257147115 257147357 -25046307 - AluJo SINE Alu -25 287 61 2542 99 94 8 chr1 257147945 257148339 -25045325 - MSTA LTR MaLR 0 428 1 240 304 13 25 chr1 257149205 257149284 -25044380 + MIR SINE MIR 16 93 -115 261 254 0 0 chr1 257149365 257149420 -25044244 + MIR3 SINE MIR 118 172 -36 1625 202 84 35 chr1 257150289 257150717 -25042947 - MLT2B1 LTR ERVL 0 414 1 949 166 0 6 chr1 257152066 257152399 -25041265 + (TCCA)n Simple_repeat Simple_repeat 1 330 0 463 290 54 75 chr1 257152408 257152687 -25040977 - L2 LINE L2 -2 3270 2998 2557 117 19 0 chr1 257153288 257153656 -25040008 - THE1C LTR MaLR 0 375 1 220 335 93 47 chr1 257153787 257154130 -25039534 + L2 LINE L2 2268 2626 -688 234 298 48 57 chr1 257154288 257154412 -25039252 + L2 LINE L2 2622 2744 -570 525 56 0 0 chr1 257154416 257154488 -25039176 - L1PA5 LINE L1 -1 6153 6082 219 341 87 16 chr1 257156758 257156884 -25036780 - L2 LINE L2 0 3272 3138 2034 137 13 0 chr1 257158760 257159060 -25034604 - AluJb SINE Alu -8 304 1 186 43 0 0 chr1 257159303 257159326 -25034338 + (TA)n Simple_repeat Simple_repeat 2 24 0 432 265 66 33 chr1 257160209 257160360 -25033304 - MIR SINE MIR -50 212 57 1966 122 63 33 chr1 257161821 257162183 -25031481 - THE1C LTR MaLR 0 375 3 1976 157 3 3 chr1 257162894 257163199 -25030465 + AluSx SINE Alu 1 305 -7 1199 133 0 28 chr1 257163719 257163856 -25029808 + AluSx SINE Alu 1 133 -179 2579 63 0 0 chr1 257163856 257164159 -25029505 + AluY SINE Alu 1 303 -8 1199 133 0 28 chr1 257164159 257164201 -25029463 + AluSx SINE Alu 133 175 -137 2440 139 13 0 chr1 257164264 257164652 -25029012 - L1PA15 LINE L1 -2 6163 5771 3662 132 17 10 chr1 257165116 257165713 -25027951 - L1MA5A LINE L1 -3 6294 5694 439 256 104 6 chr1 257165718 257165881 -25027783 - MIR SINE MIR -54 208 32 16620 40 6 1 chr1 257166027 257168785 -25024879 - L1PA5 LINE L1 0 6154 3387 21303 75 1 9 chr1 257168885 257171669 -25021995 - L1PA5 LINE L1 -3373 2773 11 372 273 161 12 chr1 257171679 257171840 -25021824 + MER5A DNA MER1_type 4 188 -1 324 222 103 26 chr1 257171958 257172075 -25021589 - MIR SINE MIR -64 144 19 424 273 0 23 chr1 257172083 257172211 -25021453 - MER5B DNA MER1_type -2 176 52 658 223 71 19 chr1 257174784 257174995 -25018669 - L1M4 LINE L1 -3245 2901 2680 2089 204 15 138 chr1 257175721 257176369 -25017295 - MER77 LTR ERV1 -4 601 54 797 307 138 28 chr1 257176400 257176957 -25016707 + L2 LINE L2 2694 3313 0 462 221 19 0 chr1 257176967 257177071 -25016593 + MER103 DNA DNA 7 112 -54 1929 82 0 0 chr1 257177560 257177803 -25015861 - AluSx SINE Alu -59 253 11 1824 145 24 0 chr1 257178897 257179186 -25014478 + AluSg SINE Alu 1 296 -14 270 0 0 0 chr1 257181714 257181744 -25011920 + (TA)n Simple_repeat Simple_repeat 1 30 0 274 159 174 0 chr1 257183635 257183704 -25009960 + MER96 DNA MER1_type? 80 160 -15 529 143 205 37 chr1 257184172 257184201 -25009463 + MER5A DNA MER1_type 1 24 -165 183 80 0 0 chr1 257184201 257184226 -25009438 + (CAG)n Simple_repeat Simple_repeat 3 27 0 529 143 205 37 chr1 257184226 257184357 -25009307 + MER5A DNA MER1_type 24 188 -1 274 293 37 12 chr1 257184566 257184648 -25009016 + MER5B DNA MER1_type 90 173 -5 861 126 55 39 chr1 257186275 257186457 -25007207 - MER53 DNA DNA -4 185 1 442 274 68 36 chr1 257187698 257187950 -25005714 + MIR SINE MIR 3 262 0 506 255 49 67 chr1 257188149 257188416 -25005248 - MIR SINE MIR 0 262 1 188 289 19 0 chr1 257188692 257188744 -25004920 - MIR SINE MIR -62 146 94 290 294 46 55 chr1 257189421 257189530 -25004134 - L2 LINE L2 -22 3250 3143 309 330 57 0 chr1 257190569 257190675 -25002989 - L2 LINE L2 -5 3267 3156 846 121 0 0 chr1 257192413 257192537 -25001127 - FLAM_C SINE Alu -19 124 1 362 301 105 13 chr1 257192710 257192863 -25000801 - MIR SINE MIR -11 251 85 197 264 69 35 chr1 257192984 257193071 -25000593 + MIR3 SINE MIR 112 201 -7 206 271 96 29 chr1 257193352 257193489 -25000175 - MIR3 SINE MIR -108 154 2 1826 129 43 13 chr1 257196636 257196939 -24996725 - AluSx SINE Alu 0 312 1 327 207 46 0 chr1 257197373 257197460 -24996204 - MLT1C LTR MaLR -190 277 187 2490 18 0 0 chr1 257197521 257197801 -24995863 - L1PA5 LINE L1 -3 6151 5872 3372 24 0 0 chr1 257197801 257198183 -24995481 + L1PA5 LINE L1 5459 5840 -315 807 176 65 35 chr1 257198187 257198211 -24995453 - MLT1C LTR MaLR -287 180 158 2467 153 36 5 chr1 257198211 257198624 -24995040 + MSTB LTR MaLR 1 426 0 807 176 65 35 chr1 257198624 257198769 -24994895 - MLT1C LTR MaLR -309 158 6 520 322 17 22 chr1 257199182 257199362 -24994302 + MIR SINE MIR 19 197 -65 435 201 39 175 chr1 257199462 257199696 -24993968 - MIR SINE MIR -14 248 47 301 326 213 0 chr1 257201630 257201771 -24991893 - MER5A DNA MER1_type -6 183 13 398 148 341 22 chr1 257201920 257202055 -24991609 + MER5B DNA MER1_type 1 178 0 724 258 187 25 chr1 257202217 257202581 -24991083 - MLT1J1 LTR MaLR -22 424 2 948 314 211 25 chr1 257202963 257204334 -24989330 + L2 LINE L2 1351 2976 -338 491 194 95 162 chr1 257204405 257204751 -24988913 - MER5C DNA MER1_type -1 323 1 540 261 45 13 chr1 257206992 257207149 -24986515 - MIR SINE MIR -66 196 35 1932 137 0 3 chr1 257207508 257207792 -24985872 + AluJb SINE Alu 1 283 -29 12819 180 23 17 chr1 257208086 257214550 -24979114 + L1MC1 LINE L1 20 6604 -9 193 330 21 31 chr1 257215362 257215459 -24978205 - L2 LINE L2 -209 3063 2968 203 111 0 44 chr1 257216175 257216220 -24977444 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 620 317 66 21 chr1 257216763 257217006 -24976658 - MIR SINE MIR -2 260 7 2120 188 8 4 chr1 257217329 257217826 -24975838 - L1MA9 LINE L1 -32 6280 5743 268 248 139 64 chr1 257218395 257218661 -24975003 + LTR33A LTR ERVL 13 298 -225 333 315 39 31 chr1 257218878 257219005 -24974659 - MIR SINE MIR -122 140 13 194 348 89 0 chr1 257219015 257219127 -24974537 + MIR SINE MIR 108 229 -33 418 235 0 96 chr1 257219681 257219817 -24973847 - MIR SINE MIR -65 143 21 2517 96 0 0 chr1 257224574 257224886 -24968778 + AluSx SINE Alu 1 312 0 189 214 0 0 chr1 257225236 257225278 -24968386 + T-rich Low_complexity Low_complexity 1 42 0 1865 144 44 0 chr1 257225388 257225688 -24967976 - AluJo SINE Alu 0 312 1 2624 143 31 5 chr1 257229263 257229684 -24963980 - MSTB1 LTR MaLR 0 432 1 7384 196 78 16 chr1 257229684 257230886 -24962778 - MSTB1-int LTR MaLR 0 1651 330 1906 139 23 17 chr1 257230886 257231187 -24962477 - AluSg SINE Alu -7 303 1 7384 196 78 16 chr1 257231187 257231539 -24962125 - MSTB1-int LTR MaLR -1321 330 1 2698 127 28 30 chr1 257231539 257231795 -24961869 - MSTB1 LTR MaLR 0 432 176 2145 136 3 0 chr1 257231795 257232096 -24961568 + AluSp SINE Alu 1 302 -11 2698 127 28 30 chr1 257232096 257232272 -24961392 - MSTB1 LTR MaLR -256 176 1 242 339 243 26 chr1 257233223 257233412 -24960252 + MIR SINE MIR 21 250 -12 270 188 0 0 chr1 257234369 257234417 -24959247 - L2 LINE L2 -5 3308 3261 326 244 51 0 chr1 257234963 257235041 -24958623 + MIR3 SINE MIR 108 189 -19 332 158 92 0 chr1 257235709 257235785 -24957879 - L1MC2 LINE L1 -11 6333 6251 437 200 27 9 chr1 257235818 257235928 -24957736 - L1MC2 LINE L1 -87 6257 6146 246 140 20 0 chr1 257235928 257235978 -24957686 + L1MC2 LINE L1 6120 6170 -174 655 248 6 13 chr1 257236705 257236862 -24956802 + MIR SINE MIR 106 261 -1 362 307 93 74 chr1 257237017 257237287 -24956377 - L3 LINE CR1 -973 604 330 368 53 0 35 chr1 257237342 257237399 -24956265 + L1P4 LINE L1 5440 5494 -667 443 345 69 22 chr1 257237699 257237931 -24955733 + MIR SINE MIR 2 244 -18 504 163 49 24 chr1 257238463 257238586 -24955078 + MER20 DNA MER1_type 1 126 -93 472 175 39 117 chr1 257238637 257238791 -24954873 + MER20 DNA MER1_type 78 219 0 1275 242 113 11 chr1 257238901 257239046 -24954618 - Charlie4a DNA MER1_type -1470 491 362 243 0 0 0 chr1 257239046 257239073 -24954591 + (TA)n Simple_repeat Simple_repeat 1 27 0 1275 242 113 11 chr1 257239073 257239369 -24954295 - Charlie4a DNA MER1_type -1599 362 5 541 358 31 5 chr1 257239528 257239721 -24953943 + MIR SINE MIR 47 244 -18 522 289 70 69 chr1 257240392 257241105 -24952559 - BaEV-int LTR ERV1 -646 7139 3387 501 123 0 0 chr1 257241793 257241874 -24951790 - ALR/Alpha Satellite centromeric -66 106 26 545 321 11 14 chr1 257242162 257242449 -24951215 - BaEV-int LTR ERV1 -2668 3981 3696 1680 161 6 97 chr1 257243126 257243467 -24950197 - AluSp SINE Alu -3 310 1 2356 112 0 7 chr1 257243626 257243931 -24949733 - AluSc SINE Alu -6 303 1 908 141 0 22 chr1 257243940 257244075 -24949589 - FLAM_C SINE Alu -1 132 1 265 180 0 0 chr1 257244366 257244416 -24949248 + MER103 DNA DNA 48 97 -69 1566 168 74 34 chr1 257244436 257244787 -24948877 + MLT1A1 LTR MaLR 1 365 0 1273 218 38 45 chr1 257245345 257245745 -24947919 + MER69 DNA AcHobo 2085 2481 -45 210 267 0 33 chr1 257245791 257245851 -24947813 + MIR3 SINE MIR 148 205 -3 189 239 174 22 chr1 257245891 257245983 -24947681 - MIR SINE MIR 0 262 157 252 301 65 4 chr1 257246226 257246333 -24947331 + MIR SINE MIR 21 131 -77 210 322 8 33 chr1 257247376 257247497 -24946167 + GA-rich Low_complexity Low_complexity 1 118 0 373 258 21 10 chr1 257247927 257248024 -24945640 + MIR3 SINE MIR 105 202 -6 298 41 20 20 chr1 257248417 257248466 -24945198 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 1118 81 0 0 chr1 257248469 257248605 -24945059 - AluSq/x SINE Alu -177 136 1 209 293 164 0 chr1 257249032 257249148 -24944516 - L2 LINE L2 0 3313 3179 2571 33 20 0 chr1 257249423 257249729 -24943935 + L1PA4 LINE L1 5841 6152 -3 1180 142 17 0 chr1 257249729 257249984 -24943680 + AluSg/x SINE Alu 132 389 0 2161 27 0 23 chr1 257249997 257250259 -24943405 + L1PA2 LINE L1 5898 6153 -2 612 169 15 7 chr1 257250279 257250415 -24943249 + GA-rich Low_complexity Low_complexity 3 139 0 1703 189 12 50 chr1 257250421 257250822 -24942842 + MER65C LTR ERV1 67 452 -9 3157 161 14 45 chr1 257250921 257251559 -24942105 - L1MB3 LINE L1 -1 6182 5565 315 49 0 0 chr1 257251591 257251632 -24942032 + (GGAAA)n Simple_repeat Simple_repeat 4 44 0 681 203 17 6 chr1 257251633 257251810 -24941854 + GA-rich Low_complexity Low_complexity 1 179 0 509 167 10 0 chr1 257251814 257251910 -24941754 + L1M3 LINE L1 5497 5593 -590 842 218 44 19 chr1 257252113 257252319 -24941345 - MIR SINE MIR -3 259 49 427 300 25 0 chr1 257252475 257252595 -24941069 + MIR SINE MIR 32 154 -108 1491 224 42 35 chr1 257252600 257253025 -24940639 + L1ME2 LINE L1 5710 6137 -27 1629 82 0 0 chr1 257253289 257253485 -24940179 - AluY SINE Alu -6 305 110 30 59 0 0 chr1 257253494 257253545 -24940119 + AT_rich Low_complexity Low_complexity 1 51 0 2596 181 20 2 chr1 257253623 257254082 -24939582 + MLT1C LTR MaLR 1 467 0 269 273 34 45 chr1 257254825 257254913 -24938751 + L2 LINE L2 3183 3269 -3 941 208 157 18 chr1 257255010 257255336 -24938328 - MLT1G1 LTR MaLR -6 536 131 1366 216 41 89 chr1 257255336 257255701 -24937963 + MSTD LTR MaLR 1 345 -51 1957 153 0 3 chr1 257255701 257255989 -24937675 + AluJb SINE Alu 9 295 -17 1366 216 41 89 chr1 257255989 257256039 -24937625 + MSTD LTR MaLR 345 396 0 941 208 157 18 chr1 257256039 257256186 -24937478 - MLT1G1 LTR MaLR -411 131 6 540 280 67 0 chr1 257256644 257256794 -24936870 - MER91A DNA MER1_type -1 195 36 380 161 296 0 chr1 257257025 257257106 -24936558 + MER81 DNA DNA 10 114 0 562 290 86 122 chr1 257257152 257257462 -24936202 - L1MB3 LINE L1 -749 5397 5077 2158 120 3 0 chr1 257257462 257257894 -24935770 + AluSp SINE Alu 1 433 0 562 290 86 122 chr1 257257894 257258505 -24935159 - L1MB3 LINE L1 -1069 5077 4509 463 330 28 25 chr1 257258507 257259077 -24934587 - L1MB3 LINE L1 -1602 4544 3973 275 269 6 19 chr1 257261002 257261158 -24932506 + CT-rich Low_complexity Low_complexity 4 157 0 180 304 0 0 chr1 257261233 257261279 -24932385 - L2 LINE L2 -3 3310 3265 4784 145 20 56 chr1 257261416 257262278 -24931386 - L1MD1 LINE L1 -8 6628 5737 2185 124 23 0 chr1 257262278 257262584 -24931080 + AluSp SINE Alu 1 313 0 4784 145 20 56 chr1 257262584 257262665 -24930999 - L1MD1 LINE L1 -899 5737 5655 1767 208 32 71 chr1 257262665 257262732 -24930932 - MLT1D LTR MaLR -2 503 435 1705 172 38 14 chr1 257262732 257262851 -24930813 + AluJb SINE Alu 1 116 -196 333 0 0 0 chr1 257262851 257262888 -24930776 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1705 172 38 14 chr1 257262888 257263058 -24930606 + AluJb SINE Alu 116 297 -15 1767 208 32 71 chr1 257263058 257263513 -24930151 - MLT1D LTR MaLR -70 435 1 4784 145 20 56 chr1 257263513 257264071 -24929593 - L1MD1 LINE L1 -981 5655 5141 3416 200 31 45 chr1 257264051 257264095 -24929569 - L1MD1 LINE L1 -2965 3575 3532 * 1832 163 0 26 chr1 257264095 257264401 -24929263 - AluJo SINE Alu -12 300 3 3416 200 31 45 chr1 257264401 257264796 -24928868 - L1MD1 LINE L1 -3008 3532 3133 891 167 109 0 chr1 257264796 257264952 -24928712 + FAM SINE Alu 1 173 -2 3416 200 31 45 chr1 257264952 257265666 -24927998 - L1MD1 LINE L1 -3407 3133 2425 1149 97 0 0 chr1 257265666 257265810 -24927854 - AluSg/x SINE Alu -15 295 152 297 43 43 0 chr1 257265811 257265857 -24927807 - L1MD1 LINE L1 -4110 2430 2383 2796 91 0 0 chr1 257265863 257266227 -24927437 + HSMAR1 DNA Mariner 924 1287 0 234 246 0 29 chr1 257266261 257266330 -24927334 + L1MC5 LINE L1 7845 7911 -50 4244 215 64 51 chr1 257266562 257268304 -24925360 - L1MD1 LINE L1 -4532 2008 25 183 363 77 22 chr1 257270094 257270185 -24923479 + L2 LINE L2 3139 3234 -38 771 167 8 0 chr1 257270220 257270352 -24923312 + FLAM_C SINE Alu 1 133 0 555 90 0 0 chr1 257270354 257270432 -24923232 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 207 114 0 0 chr1 257271189 257271224 -24922440 + (CA)n Simple_repeat Simple_repeat 1 35 0 221 302 254 15 chr1 257271965 257272170 -24921494 + MIR SINE MIR 8 261 -1 272 262 111 6 chr1 257272352 257272520 -24921144 + MIR SINE MIR 3 188 -62 1983 213 0 3 chr1 257272802 257273168 -24920496 - MLT1A1 LTR MaLR 0 365 1 537 228 22 50 chr1 257273403 257273583 -24920081 - MER112 DNA MER1_type -84 176 2 346 227 8 86 chr1 257274101 257274229 -24919435 - L1ME1 LINE L1 -290 5876 5759 1433 270 85 30 chr1 257274265 257274859 -24918805 - MER77 LTR ERV1 -4 601 54 404 145 0 0 chr1 257274877 257274939 -24918725 - L1ME1 LINE L1 -403 5763 5702 * 465 170 142 30 chr1 257274926 257275060 -24918604 + L1ME2 LINE L1 5815 5964 -200 377 240 66 16 chr1 257275280 257275401 -24918263 - MIR SINE MIR -124 138 12 484 284 7 3 chr1 257276021 257276179 -24917485 - L1ME4a LINE L1 -279 5842 5688 42699 38 29 1 chr1 257276258 257282245 -24911419 - L1PA3 LINE L1 0 6155 1 1531 205 3 20 chr1 257282347 257282644 -24911020 + AluJb SINE Alu 1 292 -20 306 252 81 72 chr1 257282674 257282896 -24910768 + MLT1J LTR MaLR 39 262 -249 2446 71 6 6 chr1 257283066 257283377 -24910287 - AluY SINE Alu 0 311 1 1564 143 7 70 chr1 257283682 257284012 -24909652 - AluJb SINE Alu 0 311 1 284 250 29 0 chr1 257284785 257284853 -24908811 + MIR SINE MIR 51 120 -88 2077 133 3 16 chr1 257284934 257285242 -24908422 + AluSx SINE Alu 1 304 -8 1051 276 68 0 chr1 257285502 257285813 -24907851 + MER46C DNA MER2_type 1 332 -6 513 319 116 21 chr1 257285895 257286318 -24907346 - L1ME2 LINE L1 -235 5929 5451 627 272 38 13 chr1 257286761 257287141 -24906523 - L1ME2 LINE L1 -698 5464 5081 1569 189 57 49 chr1 257287597 257287947 -24905717 - MLT1A1 LTR MaLR -12 353 1 345 47 0 0 chr1 257288860 257288903 -24904761 + (CA)n Simple_repeat Simple_repeat 1 43 0 264 222 0 0 chr1 257288958 257289030 -24904634 + (TGAA)n Simple_repeat Simple_repeat 4 75 0 251 304 45 9 chr1 257289361 257289473 -24904191 - MIR SINE MIR -30 232 117 1050 173 8 84 chr1 257289491 257289728 -24903936 + AluJo SINE Alu 4 222 -90 267 103 0 0 chr1 257289730 257289769 -24903895 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 553 278 115 80 chr1 257291361 257292074 -24901590 + L1MC4 LINE L1 7277 8014 -28 1415 183 90 22 chr1 257292153 257292465 -24901199 + MER1B DNA MER1_type 1 333 -4 1999 158 3 0 chr1 257293595 257293905 -24899759 - AluJb SINE Alu -1 311 1 2041 134 3 7 chr1 257294019 257294318 -24899346 - AluSq SINE Alu -15 298 1 753 256 95 5 chr1 257294679 257294890 -24898774 - MIR SINE MIR -30 232 3 300 53 0 0 chr1 257295093 257295131 -24898533 + (TG)n Simple_repeat Simple_repeat 2 39 0 243 156 78 26 chr1 257295165 257295242 -24898422 + L1ME4a LINE L1 6040 6120 -1 237 300 0 30 chr1 257295302 257295402 -24898262 + HAL1b LINE L1 1196 1292 -56 246 287 216 47 chr1 257295677 257296015 -24897649 - L2 LINE L2 0 3313 2919 599 260 71 28 chr1 257296046 257296300 -24897364 - L2 LINE L2 -493 2821 2557 223 273 10 71 chr1 257296534 257296582 -24897082 - MIR SINE MIR -16 246 205 2878 121 91 58 chr1 257296582 257297118 -24896546 + MLT2B3 LTR ERVL 1 554 0 223 273 10 71 chr1 257297118 257297168 -24896496 - MIR SINE MIR -57 205 154 933 151 7 12 chr1 257297168 257297319 -24896345 - MSTB LTR MaLR 0 426 230 1323 104 19 33 chr1 257297319 257297530 -24896134 - MSTA-int LTR MaLR -1427 224 17 1924 169 63 25 chr1 257297530 257297934 -24895730 - MSTA LTR MaLR -3 425 3 318 274 44 9 chr1 257297937 257298050 -24895614 - MIR SINE MIR -108 154 38 1127 154 0 48 chr1 257299359 257299567 -24894097 + AluJo SINE Alu 10 207 -105 360 0 0 0 chr1 257299587 257299627 -24894037 + (TA)n Simple_repeat Simple_repeat 2 41 0 211 281 18 0 chr1 257299710 257299767 -24893897 + GA-rich Low_complexity Low_complexity 3 60 0 1013 261 121 11 chr1 257300688 257301178 -24892486 - MLT1E3 LTR MaLR 0 624 14 553 183 70 0 chr1 257301304 257301419 -24892245 - FAM SINE Alu -1 48 1 1381 276 44 17 chr1 257301443 257301494 -24892170 - L1ME LINE L1 -400 5770 5722 2014 259 32 27 chr1 257301494 257302084 -24891580 - MLT1E LTR MaLR 0 593 1 1381 276 44 17 chr1 257302084 257302669 -24890995 - L1ME LINE L1 -448 5722 5122 281 250 0 0 chr1 257303063 257303123 -24890541 + L2 LINE L2 3182 3241 -72 936 265 12 4 chr1 257303131 257303388 -24890276 + MIR SINE MIR 2 260 -2 285 310 45 81 chr1 257303518 257303876 -24889788 + L2 LINE L2 2570 2914 -400 184 390 140 15 chr1 257304026 257304162 -24889502 + L2 LINE L2 3117 3269 -3 195 42 0 0 chr1 257304316 257304340 -24889324 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 528 295 90 63 chr1 257304340 257304706 -24888958 - L2 LINE L2 -11 3302 2927 453 36 0 0 chr1 257308018 257308073 -24885591 + (TC)n Simple_repeat Simple_repeat 2 56 0 285 29 0 0 chr1 257308072 257308106 -24885558 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 1985 121 7 0 chr1 257308107 257308396 -24885268 - AluSx SINE Alu -21 291 1 394 289 123 101 chr1 257309265 257309325 -24884339 + L2 LINE L2 2843 2900 -372 2192 117 0 0 chr1 257309325 257309624 -24884040 - AluSx SINE Alu -13 299 1 394 289 123 101 chr1 257309624 257309979 -24883685 + L2 LINE L2 2900 3267 -5 305 258 136 106 chr1 257310183 257310618 -24883046 + L2 LINE L2 2809 3256 -16 2798 91 3 0 chr1 257310723 257311086 -24882578 - THE1B LTR MaLR 0 364 1 217 338 208 6 chr1 257311240 257311577 -24882087 - L2 LINE L2 -946 2368 1964 261 0 0 0 chr1 257311577 257311606 -24882058 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 1606 188 19 13 chr1 257311632 257311941 -24881723 + AluJo SINE Alu 1 311 -1 289 240 27 27 chr1 257312523 257312598 -24881066 - MIR SINE MIR -185 77 3 1700 155 20 14 chr1 257312769 257313066 -24880598 + AluJo SINE Alu 1 299 -13 306 293 80 27 chr1 257314251 257314401 -24879263 - MIR3 SINE MIR -21 187 30 452 263 35 0 chr1 257315770 257315884 -24877780 - MIR SINE MIR -97 165 48 448 163 31 31 chr1 257316385 257316483 -24877181 + MER5A DNA MER1_type 9 106 -83 267 294 87 0 chr1 257316612 257316704 -24876960 + MIR SINE MIR 50 149 -113 183 288 17 51 chr1 257317030 257317089 -24876575 + L3 LINE CR1 1512 1568 -9 267 203 0 0 chr1 257317479 257317543 -24876121 + (TA)n Simple_repeat Simple_repeat 2 65 0 1731 156 11 0 chr1 257317543 257317819 -24875845 - AluJo SINE Alu -33 279 1 308 205 128 34 chr1 257317844 257317961 -24875703 - L2 LINE L2 -15 3298 3171 1756 162 27 0 chr1 257318019 257318140 -24875524 + AluJb SINE Alu 1 117 -195 201 39 0 0 chr1 257318140 257318166 -24875498 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1756 162 27 0 chr1 257318166 257318340 -24875324 + AluJb SINE Alu 117 304 -8 213 261 130 0 chr1 257318591 257318660 -24875004 + MIR3 SINE MIR 123 200 -8 234 206 186 31 chr1 257319477 257319574 -24874090 - L2 LINE L2 0 3313 3202 308 380 57 0 chr1 257319589 257319781 -24873883 + L3 LINE CR1 189 391 -1186 485 140 21 32 chr1 257320934 257321027 -24872637 - MER51C LTR ERV1 0 640 549 * 1744 136 121 59 chr1 257321016 257321355 -24872309 - MER51A LTR ERV1 -274 360 1 421 158 49 37 chr1 257321623 257321705 -24871959 + MIR SINE MIR 79 161 -101 712 229 45 6 chr1 257321853 257322032 -24871632 - MER5A DNA MER1_type -3 186 1 213 305 63 11 chr1 257323226 257323321 -24870343 + MER5A DNA MER1_type 7 106 -83 2972 154 66 32 chr1 257323374 257323966 -24869698 - L1MB3 LINE L1 0 6183 5572 483 189 246 8 chr1 257324039 257324161 -24869503 + MER5B DNA MER1_type 28 178 0 222 281 62 0 chr1 257324169 257324233 -24869431 - MER5A DNA MER1_type 0 189 122 286 98 16 16 chr1 257324239 257324300 -24869364 + (CCA)n Simple_repeat Simple_repeat 2 62 0 448 229 38 19 chr1 257324301 257324406 -24869258 - MER5B DNA MER1_type -70 108 2 194 323 31 63 chr1 257324432 257324559 -24869105 - MIR3 SINE MIR -75 133 11 1745 148 31 0 chr1 257324996 257325286 -24868378 + AluSx SINE Alu 1 299 -13 2126 125 3 0 chr1 257325427 257325739 -24867925 - AluSq SINE Alu 0 313 1 355 188 0 0 chr1 257326923 257326987 -24866677 + MER58 DNA MER1_type 2357 2420 0 1822 138 3 7 chr1 257328094 257328376 -24865288 + AluJo SINE Alu 14 294 -18 1029 210 44 16 chr1 257328492 257328744 -24864920 - MER20B DNA MER1_type -10 773 515 1777 160 0 3 chr1 257328808 257329101 -24864563 - AluJb SINE Alu -20 292 1 236 208 19 0 chr1 257329222 257329275 -24864389 - MER20B DNA MER1_type -343 440 387 4998 122 77 17 chr1 257329283 257329878 -24863786 - MER4D LTR ERV1 -8 895 233 1804 113 46 11 chr1 257329878 257330338 -24863326 - AluSx SINE Alu 0 312 1 4998 122 77 17 chr1 257330338 257330586 -24863078 - MER4D LTR ERV1 -670 233 1 917 257 41 0 chr1 257330586 257330822 -24862842 - MER20B DNA MER1_type -392 391 146 2895 131 54 81 chr1 257330826 257330884 -24862780 + MER4B LTR ERV1 1 59 -551 2234 110 0 0 chr1 257330884 257331194 -24862470 - AluSx SINE Alu -2 310 1 2895 131 54 81 chr1 257331194 257331454 -24862210 + MER4B LTR ERV1 59 298 -312 2122 118 0 0 chr1 257331454 257331750 -24861914 - AluSx SINE Alu -16 296 1 2895 131 54 81 chr1 257331750 257332020 -24861644 + MER4B LTR ERV1 298 574 -36 241 196 0 0 chr1 257332051 257332097 -24861567 + MER20B DNA MER1_type 387 432 -351 445 78 31 0 chr1 257332120 257332184 -24861480 + MER4E LTR ERV1 714 779 0 343 244 67 11 chr1 257332213 257332303 -24861361 - MER20B DNA MER1_type -686 97 3 264 122 0 0 chr1 257332408 257332449 -24861215 + (T)n Simple_repeat Simple_repeat 1 41 0 4103 128 148 33 chr1 257332518 257333846 -24859818 + pTR5 LTR ERV1 741 2606 0 310 335 144 4 chr1 257333851 257334087 -24859577 - L2 LINE L2 -138 3175 2907 932 262 48 56 chr1 257334119 257334465 -24859199 + L2 LINE L2 2920 3264 -49 1919 146 0 3 chr1 257334465 257334767 -24858897 + AluSx SINE Alu 1 301 -11 932 262 48 56 chr1 257334767 257334813 -24858851 + L2 LINE L2 3264 3309 -4 608 333 151 26 chr1 257334809 257335232 -24858432 - L2 LINE L2 -444 2870 2395 * 212 279 147 0 chr1 257335694 257335762 -24857902 + L2 LINE L2 3200 3277 -36 207 182 0 0 chr1 257336195 257336228 -24857436 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 788 126 0 8 chr1 257336256 257336375 -24857289 + FLAM_C SINE Alu 1 118 -15 37 23 0 0 chr1 257336375 257336419 -24857245 + AT_rich Low_complexity Low_complexity 1 44 0 180 271 71 29 chr1 257336422 257336492 -24857172 + MIR SINE MIR 180 252 -10 1918 152 0 0 chr1 257336510 257336806 -24856858 + AluJb SINE Alu 1 296 -16 392 322 141 0 chr1 257340312 257340461 -24853203 + MIR SINE MIR 20 189 -73 312 91 0 0 chr1 257340846 257340890 -24852774 + (CA)n Simple_repeat Simple_repeat 2 45 0 323 229 36 0 chr1 257341533 257341616 -24852048 + L2 LINE L2 3186 3271 -1 2034 118 14 3 chr1 257341965 257342262 -24851402 + AluSx SINE Alu 1 300 -12 527 294 121 39 chr1 257343305 257343587 -24850077 + HAL1 LINE L1 2099 2403 -104 2333 256 72 26 chr1 257343693 257344137 -24849527 + L1ME3A LINE L1 5114 5536 -634 3402 123 39 16 chr1 257344137 257344651 -24849013 + MER1A DNA MER1_type 1 526 -1 2026 132 3 7 chr1 257344653 257344963 -24848701 - AluSx SINE Alu -3 309 1 2333 256 72 26 chr1 257344963 257345501 -24848163 + L1ME3A LINE L1 5536 6138 -32 1926 107 0 0 chr1 257345530 257345791 -24847873 - AluSx SINE Alu -24 288 28 215 175 32 32 chr1 257346213 257346276 -24847388 + (TA)n Simple_repeat Simple_repeat 1 63 0 3983 189 61 17 chr1 257347465 257347979 -24845685 - L1ME2 LINE L1 -24 6140 5650 2133 124 70 45 chr1 257347979 257348054 -24845610 - THE1B LTR MaLR 0 364 292 2135 107 0 29 chr1 257348054 257348364 -24845300 + AluSx SINE Alu 1 301 -11 2133 124 70 45 chr1 257348364 257348643 -24845021 - THE1B LTR MaLR -72 292 1 12482 82 6 1 chr1 257348643 257350215 -24843449 - THE1B-int LTR MaLR 0 1580 1 2113 116 98 15 chr1 257350215 257350551 -24843113 - THE1B LTR MaLR 0 364 1 3983 189 61 17 chr1 257350551 257351113 -24842551 - L1ME2 LINE L1 -513 5651 5006 234 319 0 0 chr1 257351366 257351438 -24842226 - MIR SINE MIR -10 252 181 199 339 66 25 chr1 257553091 257553212 -24640452 - L2 LINE L2 -6 3266 3141 * 362 290 43 22 chr1 257553205 257553343 -24640321 + MIR3 SINE MIR 15 155 -53 2234 139 15 0 chr1 257553434 257553773 -24639891 - MER2 DNA MER2_type 0 344 1 186 43 0 0 chr1 257553779 257553802 -24639862 + (TG)n Simple_repeat Simple_repeat 1 23 0 2098 109 0 0 chr1 257554376 257554689 -24638975 + AluSx SINE Alu 1 313 0 1036 213 139 35 chr1 257554837 257555175 -24638489 + MER93b LTR ERV1 1 373 0 230 216 136 11 chr1 257555220 257555308 -24638356 - MIR SINE MIR -107 155 57 342 241 35 26 chr1 257555601 257555717 -24637947 + MIR SINE MIR 146 262 0 210 74 0 0 chr1 257555774 257555801 -24637863 - L2 LINE L2 -10 3303 3277 254 325 85 24 chr1 257555886 257556098 -24637566 + L2 LINE L2 2355 2579 -735 328 317 57 45 chr1 257556948 257557194 -24636470 + L2 LINE L2 2728 2976 -338 23 0 0 0 chr1 257559362 257559385 -24634279 + AT_rich Low_complexity Low_complexity 1 23 0 638 316 116 20 chr1 257559865 257560115 -24633549 - L2 LINE L2 -1 3312 3039 437 181 81 138 chr1 257560118 257560278 -24633386 + MER102a DNA MER1_type 178 328 -2 2307 150 33 29 chr1 257560305 257560850 -24632814 - MLT2A2 LTR ERVL 0 554 3 908 179 108 119 chr1 257562648 257563118 -24630546 + MER4C LTR ERV1 1 465 0 586 242 95 26 chr1 257563135 257563366 -24630298 - Charlie4a DNA MER1_type -84 424 178 317 181 313 0 chr1 257565208 257565291 -24628373 - L2 LINE L2 -11 3261 3153 295 278 22 0 chr1 257565359 257565449 -24628215 - MIR SINE MIR -60 202 111 297 267 51 78 chr1 257566000 257566217 -24627447 + MLT1K LTR MaLR 378 588 0 578 238 94 60 chr1 257567039 257567358 -24626306 + L1MC4a LINE L1 5664 5993 -1815 1197 147 0 15 chr1 257567559 257567763 -24625901 + AluJb SINE Alu 85 285 -27 421 289 25 13 chr1 257569891 257570050 -24623614 - MIR3 SINE MIR -7 201 41 193 29 29 29 chr1 257570070 257570105 -24623559 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1920 101 10 54 chr1 257570107 257570405 -24623259 - AluSx SINE Alu -25 287 3 2083 99 31 0 chr1 257571606 257571899 -24621765 + AluSq SINE Alu 2 303 -10 2406 64 0 3 chr1 257572090 257572402 -24621262 - AluY SINE Alu 0 311 1 22 56 0 0 chr1 257572766 257572802 -24620862 + AT_rich Low_complexity Low_complexity 1 36 0 2053 129 3 0 chr1 257572903 257573198 -24620466 + AluSx SINE Alu 1 296 -16 392 289 103 97 chr1 257573323 257573703 -24619961 + L2 LINE L2 1965 2346 -968 2042 140 0 10 chr1 257573939 257574247 -24619417 + AluSx SINE Alu 1 305 -7 484 264 74 14 chr1 257575181 257575329 -24618335 - MIR SINE MIR -96 166 10 4797 145 14 56 chr1 257576264 257576303 -24617361 + L1MB3 LINE L1 5293 5332 -851 1681 178 7 3 chr1 257576303 257576601 -24617063 + AluSx SINE Alu 1 299 -13 4797 145 14 56 chr1 257576601 257576766 -24616898 + L1MB3 LINE L1 5332 5502 -681 1996 137 0 16 chr1 257576766 257577079 -24616585 + AluSq SINE Alu 1 308 -5 4797 145 14 56 chr1 257577079 257577584 -24616080 + L1MB3 LINE L1 5502 5957 -226 2094 121 0 3 chr1 257577584 257577897 -24615767 + AluSx SINE Alu 1 312 0 4797 145 14 56 chr1 257577897 257578114 -24615550 + L1MB3 LINE L1 5957 6182 -1 203 213 16 49 chr1 257578995 257579056 -24614608 + L2 LINE L2 3209 3267 -5 203 232 71 36 chr1 257579448 257579504 -24614160 - MIR SINE MIR -51 211 154 567 239 129 64 chr1 257579820 257580062 -24613602 - MIR SINE MIR 0 262 5 1738 175 0 7 chr1 257580074 257580366 -24613298 + AluJo SINE Alu 1 290 -22 2060 133 3 0 chr1 257580390 257580691 -24612973 + AluSx SINE Alu 1 302 -10 728 286 40 5 chr1 257581646 257581870 -24611794 + MIR SINE MIR 31 262 0 428 215 56 9 chr1 257581892 257581999 -24611665 + MIR SINE MIR 25 136 -72 438 200 13 191 chr1 257582025 257582049 -24611615 - MER5A DNA MER1_type 0 189 162 1331 211 146 27 chr1 257582049 257582500 -24611164 + MLT1D LTR MaLR 1 505 0 438 200 13 191 chr1 257582500 257582705 -24610959 - MER5A DNA MER1_type -27 162 1 199 216 59 20 chr1 257582705 257582744 -24610920 + MIR3 SINE MIR 154 194 -14 1729 129 39 35 chr1 257582872 257583183 -24610481 + AluJo SINE Alu 1 312 0 572 313 162 16 chr1 257583430 257583970 -24609694 + L2 LINE L2 2687 3309 -4 2950 165 47 42 chr1 257584961 257585543 -24608121 + L1MB7 LINE L1 5522 6109 -75 729 250 6 0 chr1 257585543 257585703 -24607961 + FRAM SINE Alu 1 161 -5 2950 165 47 42 chr1 257585703 257585761 -24607903 + L1MB7 LINE L1 6109 6165 -19 220 244 218 13 chr1 257586235 257586313 -24607351 - MIR3 SINE MIR -112 96 3 1769 173 0 3 chr1 257586530 257586843 -24606821 + AluJb SINE Alu 1 312 0 212 315 14 0 chr1 257587245 257587318 -24606346 - L2 LINE L2 -681 2633 2560 407 183 10 96 chr1 257587436 257587540 -24606124 + MER21B LTR ERV1 12 106 -757 * 1127 174 147 45 chr1 257587538 257587695 -24605969 + MER21B LTR ERV1 19 159 -704 1362 218 0 20 chr1 257587695 257588060 -24605604 + AluJo SINE Alu 1 359 0 465 19 0 0 chr1 257588059 257588113 -24605551 + (GGGA)n Simple_repeat Simple_repeat 2 55 0 1127 174 147 45 chr1 257588060 257588218 -24605446 + MER21B LTR ERV1 159 310 -553 3507 129 11 4 chr1 257588226 257588751 -24604913 + L1PA14 LINE L1 5592 6120 -41 1996 129 199 6 chr1 257588753 257589110 -24604554 - MSTA LTR MaLR 0 428 3 9429 164 35 8 chr1 257589110 257590714 -24602950 - MSTA-int LTR MaLR 0 1651 2 1221 159 141 30 chr1 257590717 257591053 -24602611 - MSTA LTR MaLR -2 426 15 279 0 0 0 chr1 257591160 257591191 -24602473 + (CA)n Simple_repeat Simple_repeat 2 32 0 432 55 0 0 chr1 257591191 257591246 -24602418 + (GA)n Simple_repeat Simple_repeat 1 55 0 1824 208 84 40 chr1 257591286 257591392 -24602272 + MER21B LTR ERV1 317 417 -446 2282 117 73 9 chr1 257591392 257591734 -24601930 - THE1B LTR MaLR 0 364 1 1824 208 84 40 chr1 257591734 257592104 -24601560 + MER21B LTR ERV1 417 814 -49 1546 143 66 42 chr1 257592276 257592562 -24601102 + AluJo SINE Alu 1 293 -19 633 14 0 0 chr1 257592564 257592638 -24601026 + (CAATA)n Simple_repeat Simple_repeat 2 75 0 877 281 83 28 chr1 257592864 257592986 -24600678 + L2 LINE L2 1621 1735 -1579 2137 119 0 0 chr1 257592986 257593298 -24600366 - AluSx SINE Alu 0 312 1 877 281 83 28 chr1 257593298 257593538 -24600126 + L2 LINE L2 1735 2003 -1311 * 1453 240 54 52 chr1 257593537 257593829 -24599835 - L2 LINE L2 -1694 1620 1330 2071 121 3 0 chr1 257593829 257594118 -24599546 + AluSq SINE Alu 1 290 -23 1453 240 54 52 chr1 257594118 257594238 -24599426 - L2 LINE L2 -1984 1330 1204 1760 246 129 2 chr1 257594238 257594741 -24598923 - MLT1F1 LTR MaLR 0 567 1 1453 240 54 52 chr1 257594741 257594848 -24598816 - L2 LINE L2 -2110 1204 1099 2036 124 7 0 chr1 257595054 257595353 -24598311 - AluSx SINE Alu -11 301 1 1966 141 3 10 chr1 257595885 257596197 -24597467 - AluSx SINE Alu -2 310 1 24 32 0 0 chr1 257596197 257596228 -24597436 + AT_rich Low_complexity Low_complexity 1 31 0 1607 162 13 36 chr1 257596529 257596832 -24596832 - AluJo SINE Alu -14 298 3 2180 117 3 0 chr1 257596883 257597190 -24596474 + AluSc SINE Alu 1 308 -1 1920 138 10 16 chr1 257598351 257598662 -24595002 - AluSx SINE Alu -3 309 1 210 245 0 0 chr1 257598687 257598736 -24594928 + L2 LINE L2 3263 3311 -2 369 274 60 0 chr1 257598991 257599108 -24594556 + MIR3 SINE MIR 31 154 -54 284 350 164 0 chr1 257599291 257599474 -24594190 - MIR SINE MIR -48 214 2 505 237 146 6 chr1 257599938 257600119 -24593545 + L1MC5 LINE L1 7040 7243 -731 298 159 48 0 chr1 257600268 257600331 -24593333 + L1MC5 LINE L1 7302 7367 -594 254 111 0 0 chr1 257600336 257600372 -24593292 - MER20 DNA MER1_type 0 219 184 317 219 102 43 chr1 257600407 257600594 -24593070 + L1MEc LINE L1 2117 2314 -4082 1356 272 51 2 chr1 257600600 257601070 -24592594 + L1MEc LINE L1 2303 2795 -3420 1046 174 13 52 chr1 257601358 257601588 -24592076 - L1MB3 LINE L1 0 6183 5963 2396 165 77 18 chr1 257602180 257602599 -24591065 - L1MC1 LINE L1 0 6333 5879 1735 115 53 153 chr1 257602599 257603016 -24590648 + THE1C LTR MaLR 1 375 0 2396 165 77 18 chr1 257603016 257603093 -24590571 - L1MC1 LINE L1 -454 5879 5808 484 263 39 0 chr1 257603272 257603451 -24590213 - L1M4 LINE L1 -3714 2432 2247 2005 132 13 13 chr1 257603519 257603822 -24589842 - AluJo SINE Alu -3 309 7 722 316 66 0 chr1 257604042 257604298 -24589366 + LTR16A LTR ERVL 166 438 -12 465 195 53 44 chr1 257604320 257604398 -24589266 + MER45 DNA AcHobo 5 86 -92 3737 184 11 54 chr1 257604398 257604871 -24588793 - MER72 LTR ERV1 0 722 293 2563 61 0 16 chr1 257604871 257605182 -24588482 + AluY SINE Alu 1 306 -5 3737 184 11 54 chr1 257605182 257605463 -24588201 - MER72 LTR ERV1 -429 293 1 465 195 53 44 chr1 257605463 257605497 -24588167 + MER45 DNA AcHobo 86 118 -60 513 62 0 0 chr1 257605497 257605561 -24588103 + U6 snRNA snRNA 1 64 -43 24 0 0 0 chr1 257605561 257605585 -24588079 + AT_rich Low_complexity Low_complexity 1 24 0 1250 149 24 69 chr1 257605585 257605822 -24587842 + MER45R DNA AcHobo 1252 1471 -110 2107 111 28 3 chr1 257605822 257606111 -24587553 - AluSx SINE Alu -10 302 7 1250 149 24 69 chr1 257606111 257606208 -24587456 + MER45R DNA AcHobo 1471 1571 -10 765 143 30 30 chr1 257607169 257607302 -24586362 - FLAM_C SINE Alu 0 133 1 956 274 22 16 chr1 257607322 257607640 -24586024 + L1MC4a LINE L1 6268 6587 -1221 2115 120 21 3 chr1 257607655 257607946 -24585718 - AluSx SINE Alu -16 296 1 2256 82 7 7 chr1 257607954 257608235 -24585429 - AluSq SINE Alu -11 302 22 22 80 0 0 chr1 257608257 257608307 -24585357 + AT_rich Low_complexity Low_complexity 1 50 0 640 208 30 6 chr1 257608353 257608521 -24585143 - LTR37B LTR ERV1 -77 391 220 224 217 0 0 chr1 257608526 257608586 -24585078 + T-rich Low_complexity Low_complexity 1 60 0 428 235 23 45 chr1 257608611 257608722 -24584942 - LTR37B LTR ERV1 -257 211 102 2085 106 48 3 chr1 257608722 257609015 -24584649 + AluSq SINE Alu 3 308 -5 428 235 23 45 chr1 257609015 257609035 -24584629 - LTR37B LTR ERV1 -366 102 83 4183 192 68 92 chr1 257609074 257610313 -24583351 + L1MC4 LINE L1 6709 7915 -127 189 0 0 0 chr1 257610313 257610334 -24583330 + (TGGA)n Simple_repeat Simple_repeat 3 23 0 4183 192 68 92 chr1 257610334 257610435 -24583229 + L1MC4 LINE L1 7915 8017 -25 1782 164 3 50 chr1 257611041 257611359 -24582305 + AluJo SINE Alu 1 303 -9 2159 134 0 0 chr1 257612319 257612609 -24581055 + AluJb SINE Alu 1 290 -22 2119 122 0 35 chr1 257612617 257612928 -24580736 + AluSx SINE Alu 1 300 -12 468 88 0 236 chr1 257612955 257613009 -24580655 + L1MB2 LINE L1 5776 5776 -395 2262 107 3 0 chr1 257613009 257613307 -24580357 + AluSp SINE Alu 1 299 -14 468 88 0 236 chr1 257613307 257613400 -24580264 + L1MB2 LINE L1 5775 5888 -283 248 309 71 0 chr1 257613479 257613563 -24580101 + L2 LINE L2 3146 3235 -37 204 97 0 0 chr1 257613583 257613614 -24580050 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 2326 105 3 10 chr1 257614122 257614436 -24579228 + AluSx SINE Alu 1 312 0 1424 180 56 0 chr1 257614502 257614580 -24579084 + AluJo SINE Alu 39 111 -201 201 74 0 0 chr1 257614580 257614607 -24579057 + (CA)n Simple_repeat Simple_repeat 2 28 0 1424 180 56 0 chr1 257614607 257614778 -24578886 + AluJo SINE Alu 111 302 -10 2763 139 21 6 chr1 257615066 257615540 -24578124 + MER31A LTR ERV1 1 481 -4 212 86 29 0 chr1 257615848 257615883 -24577781 + (GA)n Simple_repeat Simple_repeat 2 37 0 390 279 90 8 chr1 257616194 257616316 -24577348 - L2 LINE L2 -5 3267 3136 2204 100 42 0 chr1 257617177 257617466 -24576198 + AluSx SINE Alu 1 301 -11 443 601 0 0 chr1 257617475 257617653 -24576011 + polypurine Low_complexity Low_complexity 1 178 0 * 493 156 9 9 chr1 257617634 257617702 -24575962 + GA-rich Low_complexity Low_complexity 4 74 -38 2277 126 0 3 chr1 257617702 257618011 -24575653 + AluSx SINE Alu 1 308 -4 493 156 9 9 chr1 257618011 257618051 -24575613 + GA-rich Low_complexity Low_complexity 73 112 0 501 278 99 12 chr1 257618381 257618633 -24575031 - L2 LINE L2 -1201 2113 1840 758 285 0 6 chr1 257618705 257618870 -24574794 + MIR SINE MIR 49 212 -50 547 162 10 0 chr1 257618872 257618971 -24574693 - FLAM_C SINE Alu -12 131 32 1023 295 32 12 chr1 257619009 257619351 -24574313 + LTR16B LTR ERVL 116 464 0 470 195 35 18 chr1 257619355 257619468 -24574196 + MER103 DNA DNA 45 159 -7 2125 137 0 0 chr1 257619567 257619866 -24573798 + AluSx SINE Alu 1 299 -13 236 188 21 0 chr1 257619868 257619916 -24573748 + L3 LINE CR1 1523 1571 -6 280 314 14 0 chr1 257620059 257620129 -24573535 - MIR SINE MIR -113 149 79 245 198 66 110 chr1 257621414 257621505 -24572159 - MIR SINE MIR -56 206 120 327 271 73 10 chr1 257622177 257622273 -24571391 + MIR SINE MIR 109 210 -52 2432 96 0 0 chr1 257622356 257622657 -24571007 + AluSx SINE Alu 1 301 -11 405 109 0 0 chr1 257622795 257622859 -24570805 + (TC)n Simple_repeat Simple_repeat 1 64 0 333 85 0 0 chr1 257623702 257623749 -24569915 - tRNA-Gln-CAG tRNA tRNA -28 47 1 940 83 8 0 chr1 257623876 257623997 -24569667 + AluSp/q SINE Alu 176 297 -16 2140 101 0 7 chr1 257624045 257624322 -24569342 + AluSq SINE Alu 1 275 -38 441 221 21 7 chr1 257624322 257624462 -24569202 + GA-rich Low_complexity Low_complexity 3 144 0 976 198 59 101 chr1 257624469 257624807 -24568857 - MER92A LTR ERV1 -61 351 28 1036 194 50 40 chr1 257624869 257624937 -24568727 - LTR37A LTR ERV1 -14 412 346 2288 102 3 3 chr1 257624937 257625232 -24568432 + AluSp SINE Alu 1 295 -18 1036 194 50 40 chr1 257625232 257625462 -24568202 - LTR37A LTR ERV1 -80 346 111 359 165 28 119 chr1 257625493 257625557 -24568107 - LTR37A LTR ERV1 -288 138 85 1934 121 10 35 chr1 257625557 257625878 -24567786 + AluSx SINE Alu 7 320 0 359 165 28 119 chr1 257625878 257625921 -24567743 - LTR37A LTR ERV1 -341 85 40 952 212 9 61 chr1 257625921 257625982 -24567682 - MER20 DNA MER1_type 0 219 156 2722 140 63 95 chr1 257625982 257626612 -24567052 + MER4B LTR ERV1 1 610 0 952 212 9 61 chr1 257626612 257626781 -24566883 - MER20 DNA MER1_type -63 156 1 252 143 0 20 chr1 257626781 257626828 -24566836 - LTR37A LTR ERV1 -379 47 2 647 164 0 67 chr1 257627001 257627166 -24566498 - MER53 DNA DNA -26 163 10 1911 108 60 4 chr1 257627166 257627455 -24566209 - AluSq SINE Alu 0 304 1 741 253 11 35 chr1 257627498 257627727 -24565937 + MIR SINE MIR 12 234 -28 241 184 0 66 chr1 257628445 257628521 -24565143 + (CGGGG)n Simple_repeat Simple_repeat 1 71 0 374 287 85 8 chr1 257629347 257629476 -24564188 + MIR3 SINE MIR 3 141 -67 404 309 193 22 chr1 257629497 257629859 -24563805 + L2 LINE L2 2852 3275 -38 288 77 0 0 chr1 257629861 257629900 -24563764 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 352 213 0 27 chr1 257629904 257629979 -24563685 - L2 LINE L2 -16 3297 3225 831 128 15 15 chr1 257630055 257630188 -24563476 + FLAM_C SINE Alu 1 133 0 271 278 0 0 chr1 257630291 257630345 -24563319 - L2 LINE L2 -1 3271 3218 337 306 20 0 chr1 257630522 257630620 -24563044 - MIR SINE MIR -106 156 57 553 309 126 25 chr1 257630685 257631090 -24562574 - L2 LINE L2 -1342 1972 1527 821 208 99 30 chr1 257631430 257631632 -24562032 - MIR SINE MIR 0 262 47 432 239 92 50 chr1 257632457 257632616 -24561048 + MIR3 SINE MIR 3 172 -62 232 209 0 0 chr1 257634376 257634419 -24559245 - MIR SINE MIR -102 160 118 2226 108 0 7 chr1 257634818 257635115 -24558549 + AluSx SINE Alu 6 300 -12 294 29 0 0 chr1 257635356 257635391 -24558273 + (TG)n Simple_repeat Simple_repeat 1 35 0 2120 123 7 7 chr1 257635866 257636175 -24557489 - AluJb SINE Alu -3 309 1 388 226 153 40 chr1 257636263 257636440 -24557224 - MIR SINE MIR -58 204 8 449 224 170 32 chr1 257637302 257637460 -24556204 + MIR SINE MIR 54 218 -29 337 268 58 58 chr1 257637756 257637836 -24555828 - L1MDb LINE L1 -5207 1202 1120 2095 151 3 10 chr1 257637836 257638147 -24555517 - AluJo SINE Alu -2 310 2 337 268 58 58 chr1 257638147 257638204 -24555460 - L1MDb LINE L1 -5288 1121 1065 2017 179 30 2 chr1 257638209 257638606 -24555058 - L1MC3 LINE L1 -8 7777 7370 1711 141 30 50 chr1 257638607 257638904 -24554760 + AluJb SINE Alu 9 299 -13 268 308 42 42 chr1 257639546 257639689 -24553975 + MIR3 SINE MIR 64 206 -2 899 180 62 10 chr1 257639956 257640150 -24553514 + MER3 DNA MER1_type 6 209 0 1790 160 14 27 chr1 257640246 257640540 -24553124 + AluJb SINE Alu 1 290 -22 682 232 36 75 chr1 257640601 257640724 -24552940 + MIR SINE MIR 33 150 -112 1563 104 0 48 chr1 257640724 257640954 -24552710 + AluY SINE Alu 76 294 -17 682 232 36 75 chr1 257640954 257641058 -24552606 + MIR SINE MIR 150 256 -6 931 101 148 101 chr1 257642840 257643049 -24550615 - MER20 DNA MER1_type 0 219 1 355 248 89 13 chr1 257643689 257643846 -24549818 - MLT1F LTR MaLR -19 523 355 * 919 251 130 27 chr1 257643820 257644190 -24549474 - MLT1G1 LTR MaLR -176 419 12 182 316 74 32 chr1 257644447 257644542 -24549122 - L2 LINE L2 -5 3267 3169 1664 145 0 14 chr1 257644685 257644961 -24548703 + MER47A DNA MER2_type 1 272 -94 4443 148 25 42 chr1 257644961 257645279 -24548385 - MER4D LTR ERV1 0 903 581 2273 115 3 10 chr1 257645279 257645593 -24548071 + AluSx SINE Alu 1 312 0 4443 148 25 42 chr1 257645593 257645812 -24547852 - MER4D LTR ERV1 -322 581 360 1479 64 133 0 chr1 257645812 257646015 -24547649 - MER30 DNA MER1_type 0 230 1 4443 148 25 42 chr1 257646015 257646395 -24547269 - MER4D LTR ERV1 -543 360 1 579 163 0 10 chr1 257646395 257646491 -24547173 + MER47A DNA MER2_type 269 363 -3 4118 79 11 35 chr1 257647744 257648312 -24545352 - MER41A LTR ERV1 0 554 1 795 182 0 55 chr1 257649847 257650012 -24543652 - FRAM SINE Alu -9 157 2 182 250 0 23 chr1 257650274 257650318 -24543346 + MIR SINE MIR 103 145 -63 592 214 202 11 chr1 257650342 257650520 -24543144 - MIR SINE MIR -38 224 13 348 336 35 14 chr1 257650655 257650798 -24542866 - MIR SINE MIR -70 192 47 2076 81 0 0 chr1 257650804 257651052 -24542612 + AluSq SINE Alu 1 248 -65 2293 114 3 0 chr1 257651409 257651708 -24541956 - AluSg SINE Alu -10 300 1 1901 157 26 7 chr1 257652394 257652699 -24540965 + AluJb SINE Alu 1 311 -1 614 270 77 64 chr1 257653572 257653789 -24539875 - L1M4 LINE L1 -1312 4834 4610 1694 169 3 45 chr1 257653789 257654102 -24539562 - AluJo SINE Alu -12 300 1 614 270 77 64 chr1 257654102 257654195 -24539469 - L1M4 LINE L1 -1536 4610 4520 258 263 88 0 chr1 257654581 257654695 -24538969 - LTR33 LTR ERVL -396 125 2 2313 113 0 0 chr1 257654814 257655115 -24538549 - AluSx SINE Alu -11 301 1 4748 36 2 0 chr1 257655873 257656450 -24537214 - LTR10C LTR ERV1 0 591 14 477 262 24 60 chr1 257656590 257656758 -24536906 + MIR SINE MIR 69 230 -32 356 59 20 0 chr1 257657050 257657101 -24536563 + (TA)n Simple_repeat Simple_repeat 2 53 0 2224 108 0 3 chr1 257657101 257657387 -24536277 - AluSq SINE Alu -28 285 1 216 0 0 0 chr1 257657397 257657421 -24536243 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 975 135 0 0 chr1 257657429 257657562 -24536102 - AluSg/x SINE Alu -33 277 145 1242 353 10 48 chr1 257657742 257658051 -24535613 + AluSx SINE Alu 2 298 -4 353 264 28 28 chr1 257658056 257658162 -24535502 + L1MC4 LINE L1 6598 6703 -1339 1874 166 3 13 chr1 257658163 257658465 -24535199 - AluJb SINE Alu -13 299 1 1028 124 0 67 chr1 257659133 257659311 -24534353 - FRAM SINE Alu -10 166 1 1703 119 0 0 chr1 257660223 257660442 -24533222 + AluSx SINE Alu 1 219 -93 1890 104 12 12 chr1 257660442 257660701 -24532963 + AluSx SINE Alu 39 297 -15 1068 74 0 0 chr1 257661148 257661270 -24532394 + AluSq/x SINE Alu 16 137 -175 290 247 148 0 chr1 257662034 257662115 -24531549 + L3 LINE CR1 1478 1570 -7 2201 128 3 7 chr1 257662120 257662424 -24531240 - AluSx SINE Alu -9 303 1 2145 214 99 12 chr1 257662927 257663515 -24530149 - LTR48B LTR ERV1 -1 643 5 753 232 61 6 chr1 257665140 257665321 -24528343 + MIR SINE MIR 45 235 -27 1954 142 18 0 chr1 257665382 257665664 -24528000 + AluJo SINE Alu 6 292 -20 1002 287 51 5 chr1 257665786 257666180 -24527484 - L1MC4 LINE L1 0 8042 7631 505 280 14 14 chr1 257668202 257668345 -24525319 - MIR SINE MIR -118 144 2 663 276 61 23 chr1 257669242 257669294 -24524370 - MIR SINE MIR -12 250 201 2277 137 8 0 chr1 257669294 257669652 -24524012 + MER46B DNA MER2_type 1 236 0 663 276 61 23 chr1 257669652 257669813 -24523851 - MIR SINE MIR -61 201 29 899 192 126 0 chr1 257670054 257670252 -24523412 - MER58A DNA MER1_type 0 224 2 186 118 0 0 chr1 257671201 257671235 -24522429 + (GGA)n Simple_repeat Simple_repeat 1 34 0 475 249 116 21 chr1 257672082 257672271 -24521393 - MER63A DNA MER1_type -3 207 1 392 262 87 27 chr1 257672556 257672705 -24520959 - MIR3 SINE MIR -21 187 30 188 255 0 0 chr1 257672785 257672832 -24520832 + MIR SINE MIR 81 127 -81 232 235 221 0 chr1 257673455 257673523 -24520141 + MIR SINE MIR 42 124 -84 2093 106 29 26 chr1 257673533 257673844 -24519820 - AluSx SINE Alu 0 312 1 1956 149 10 7 chr1 257674369 257674670 -24518994 - AluJo SINE Alu -5 307 6 232 236 0 0 chr1 257674767 257674822 -24518842 - FLAM SINE Alu -12 121 67 1903 165 3 25 chr1 257678358 257678673 -24514991 - AluJo SINE Alu -4 308 1 937 163 0 0 chr1 257678673 257678808 -24514856 - AluJo SINE Alu -177 135 1 720 192 0 0 chr1 257679479 257679599 -24514065 + FRAM SINE Alu 1 120 -56 468 230 10 0 chr1 257679660 257679760 -24513904 + MER5A DNA MER1_type 1 101 -88 2184 142 0 10 chr1 257680129 257680439 -24513225 - AluSx SINE Alu -5 307 1 1043 90 8 0 chr1 257680439 257680573 -24513091 - AluSq/x SINE Alu -178 135 1 303 106 0 21 chr1 257681887 257681934 -24511730 - MER3 DNA MER1_type 0 209 164 * 340 176 0 148 chr1 257681909 257682017 -24511647 - MER3 DNA MER1_type -117 92 1 2335 80 3 17 chr1 257682372 257682671 -24510993 + AluSg SINE Alu 9 303 -7 185 0 40 0 chr1 257682862 257682887 -24510777 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 8289 22 4 0 chr1 257682887 257684606 -24509058 - L1PA3 LINE L1 -13 6142 4420 2087 121 0 3 chr1 257684817 257685106 -24508558 - AluSx SINE Alu -24 288 1 482 234 160 11 chr1 257686931 257687106 -24506558 - MLT1J LTR MaLR -276 235 35 1074 151 15 35 chr1 257688932 257688960 -24504704 + AluJo SINE Alu 107 134 -178 2174 124 3 16 chr1 257688960 257689097 -24504567 + AluSq SINE Alu 1 138 -175 2215 101 3 17 chr1 257689097 257689393 -24504271 + AluSp SINE Alu 1 292 -21 2174 124 3 16 chr1 257689393 257689570 -24504094 + AluSq SINE Alu 138 311 -2 1074 151 15 35 chr1 257689570 257689740 -24503924 + AluJo SINE Alu 134 301 -11 383 221 42 11 chr1 257690034 257690129 -24503535 + MER5B DNA MER1_type 1 98 -80 207 296 179 44 chr1 257692768 257693220 -24500444 + L2 LINE L2 1592 2104 -1210 226 246 74 16 chr1 257693408 257693445 -24500219 + L1ME LINE L1 5794 5827 -294 2156 124 7 0 chr1 257693445 257693735 -24499929 + AluSx SINE Alu 1 292 -20 226 246 74 16 chr1 257693735 257693819 -24499845 + L1ME LINE L1 5827 5922 -199 250 287 23 23 chr1 257694185 257694272 -24499392 - MIR SINE MIR -72 136 50 917 265 134 52 chr1 257694273 257694771 -24498893 - MLT1E2 LTR MaLR -7 619 81 716 148 19 202 chr1 257694781 257694965 -24498699 + MER6B DNA MER2_type 1 127 -738 761 196 0 0 chr1 257694965 257695098 -24498566 + FLAM_C SINE Alu 1 133 0 716 148 19 202 chr1 257695098 257695170 -24498494 + MER6B DNA MER2_type 127 210 0 35 0 0 0 chr1 257697312 257697347 -24496317 + AT_rich Low_complexity Low_complexity 1 35 0 1066 120 120 0 chr1 257697744 257697960 -24495704 + L1MA8 LINE L1 6050 6291 0 1714 88 160 8 chr1 257698190 257698440 -24495224 - AluSg SINE Alu -22 288 1 681 126 81 9 chr1 257701263 257701374 -24492290 - FLAM_C SINE Alu -14 119 1 242 295 39 0 chr1 257701472 257701550 -24492114 + L1ME3A LINE L1 5384 5464 -710 212 83 0 28 chr1 257701673 257701709 -24491955 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 343 216 272 2 chr1 257701710 257701904 -24491760 + L1ME3A LINE L1 5732 5970 -194 468 51 0 0 chr1 257702248 257702307 -24491357 + (TG)n Simple_repeat Simple_repeat 2 60 0 2418 81 0 0 chr1 257702310 257702605 -24491059 - AluY SINE Alu -16 295 1 2295 103 3 0 chr1 257702605 257702895 -24490769 - AluSq SINE Alu -21 292 1 769 235 15 0 chr1 257702927 257703063 -24490601 + FRAM SINE Alu 19 156 -20 203 204 19 0 chr1 257703063 257703117 -24490547 + (TA)n Simple_repeat Simple_repeat 2 56 0 1606 192 10 39 chr1 257703164 257703294 -24490370 + AluJo SINE Alu 1 133 -179 1825 186 0 3 chr1 257703294 257703609 -24490055 + AluJb SINE Alu 1 314 0 1606 192 10 39 chr1 257703609 257703789 -24489875 + AluJo SINE Alu 133 303 -9 1763 89 124 0 chr1 257705706 257705963 -24487701 + AluSx SINE Alu 1 289 -23 1168 180 0 5 chr1 257705979 257706168 -24487496 + AluJo SINE Alu 1 188 -124 616 165 0 0 chr1 257706275 257706372 -24487292 + AluSg/x SINE Alu 211 307 -5 1727 176 20 7 chr1 257706400 257706696 -24486968 - AluJb SINE Alu -12 300 1 852 177 0 0 chr1 257706936 257707077 -24486587 + FLAM_C SINE Alu 1 141 -2 22 0 0 0 chr1 257707635 257707657 -24486007 + AT_rich Low_complexity Low_complexity 1 22 0 413 200 12 0 chr1 257707746 257707831 -24485833 - MER103 DNA DNA -2 164 79 341 157 0 0 chr1 257709018 257709069 -24484595 + Alu SINE Alu 243 293 -9 363 200 38 0 chr1 257709350 257709430 -24484234 - L1ME3A LINE L1 -6 6164 6082 428 184 353 22 chr1 257709685 257709821 -24483843 - MIR SINE MIR -69 193 13 259 291 43 60 chr1 257711226 257711343 -24482321 - MIR3 SINE MIR -93 115 1 27 0 0 0 chr1 257712505 257712532 -24481132 + AT_rich Low_complexity Low_complexity 1 27 0 233 220 220 0 chr1 257712567 257712708 -24480956 - MER104 DNA Tc2 -3 177 6 2165 91 28 0 chr1 257713215 257713500 -24480164 - AluSp SINE Alu -20 293 1 324 278 0 11 chr1 257713516 257713606 -24480058 + L1MC4 LINE L1 6618 6706 -1336 2063 118 0 7 chr1 257714705 257714985 -24478679 + AluSg SINE Alu 9 286 -24 954 126 0 0 chr1 257715048 257715175 -24478489 - FLAM_C SINE Alu -5 128 2 2023 127 19 13 chr1 257716215 257716522 -24477142 + AluJb SINE Alu 4 312 0 736 154 8 17 chr1 257719916 257720033 -24473631 + FLAM_A SINE Alu 7 122 -20 376 198 198 16 chr1 257720395 257720521 -24473143 + MER5B DNA MER1_type 20 168 -10 661 265 47 51 chr1 257720609 257720843 -24472821 + MIR SINE MIR 18 250 -12 553 161 0 0 chr1 257721090 257721177 -24472487 + FLAM_A SINE Alu 44 130 -12 232 230 257 26 chr1 257721269 257721382 -24472282 - MER5A DNA MER1_type -8 181 43 * 486 214 191 8 chr1 257721282 257721413 -24472251 + MER5A DNA MER1_type 35 189 0 1159 216 37 9 chr1 257721655 257721873 -24471791 + MER58A DNA MER1_type 1 224 0 2222 110 0 0 chr1 257722450 257722742 -24470922 + AluSx SINE Alu 1 292 -20 1412 214 62 22 chr1 257723297 257724150 -24469514 + L1ME LINE L1 4071 5116 -1050 2340 76 0 57 chr1 257724150 257724466 -24469198 + AluSx SINE Alu 1 298 -14 1412 214 62 22 chr1 257724466 257724988 -24468676 + L1ME LINE L1 5116 5616 -550 450 205 60 0 chr1 257724998 257725081 -24468583 - FLAM_A SINE Alu -25 117 30 2232 120 0 0 chr1 257725196 257725505 -24468159 + AluSx SINE Alu 4 312 0 2165 124 3 0 chr1 257725736 257726034 -24467630 - AluSp SINE Alu -14 299 1 200 197 0 49 chr1 257727933 257727994 -24465670 + A-rich Low_complexity Low_complexity 3 60 0 404 289 69 19 chr1 257728077 257728236 -24465428 + MIR3 SINE MIR 42 208 0 1930 104 6 82 chr1 257728298 257728477 -24465187 - AluSx SINE Alu -20 292 146 2101 96 7 14 chr1 257728477 257728770 -24464894 - AluSc SINE Alu -18 291 1 1930 104 6 82 chr1 257728770 257728906 -24464758 - AluSx SINE Alu -166 146 1 357 309 196 45 chr1 257729015 257730043 -24463621 + L2 LINE L2 552 1735 -1579 27 49 0 0 chr1 257730714 257730755 -24462909 + AT_rich Low_complexity Low_complexity 1 41 0 2224 110 51 15 chr1 257731609 257731945 -24461719 + MER7A DNA MER2_type 1 346 0 324 367 113 7 chr1 257732059 257732209 -24461455 + L2 LINE L2 3103 3268 -4 293 282 45 19 chr1 257732413 257732569 -24461095 + L1MC/D LINE L1 5317 5476 -2332 333 250 0 0 chr1 257732684 257732768 -24460896 + L1MA9 LINE L1 6189 6272 -40 1995 154 0 7 chr1 257732795 257733094 -24460570 + AluJb SINE Alu 1 297 -15 186 133 0 0 chr1 257733118 257733148 -24460516 + (AGGGGG)n Simple_repeat Simple_repeat 2 31 0 1126 98 12 12 chr1 257733248 257733411 -24460253 + AluY SINE Alu 132 294 -17 1753 193 120 49 chr1 257733443 257733998 -24459666 + MLT1E2 LTR MaLR 1 581 -45 1072 229 23 103 chr1 257733998 257734395 -24459269 - MLT1A1 LTR MaLR 0 365 1 1753 193 120 49 chr1 257734395 257734435 -24459229 + MLT1E2 LTR MaLR 581 617 -9 374 314 155 10 chr1 257734566 257734773 -24458891 - MIR SINE MIR -12 250 14 1961 133 7 3 chr1 257735204 257735498 -24458166 - AluSx SINE Alu -17 295 1 297 0 0 0 chr1 257735538 257735571 -24458093 + (CA)n Simple_repeat Simple_repeat 1 33 0 619 115 0 0 chr1 257735767 257735845 -24457819 + AluJ/FLAM SINE Alu 2 79 -233 2116 120 3 3 chr1 257737167 257737467 -24456197 + AluSx SINE Alu 1 300 -12 4267 97 32 58 chr1 257738474 257739135 -24454529 + LTR9B LTR ERV1 1 644 0 617 234 76 35 chr1 257739236 257739407 -24454257 + MLT1K LTR MaLR 395 572 -16 275 308 66 50 chr1 257739552 257739734 -24453930 - MER5A DNA MER1_type -3 186 2 253 325 25 33 chr1 257740057 257740177 -24453487 - MIR SINE MIR -124 138 20 5140 96 43 36 chr1 257740419 257740770 -24452894 + MER4E LTR ERV1 1 348 -431 2222 107 0 7 chr1 257740770 257741068 -24452596 - AluSg SINE Alu -14 296 1 5140 96 43 36 chr1 257741068 257741490 -24452174 + MER4E LTR ERV1 348 779 0 193 207 164 52 chr1 257741661 257741777 -24451887 - L2 LINE L2 -3 3310 3182 422 284 180 28 chr1 257742330 257742541 -24451123 - L1MC/D LINE L1 -438 5683 5532 307 271 93 28 chr1 257742707 257742814 -24450850 - MIR SINE MIR -74 188 75 1782 221 37 42 chr1 257743044 257743501 -24450163 + MLT1E3 LTR MaLR 161 615 -9 1059 160 0 6 chr1 257743649 257743824 -24449840 + FRAM SINE Alu 1 171 -5 364 286 0 0 chr1 257745071 257745162 -24448502 + MIR SINE MIR 64 154 -108 595 246 34 29 chr1 257745387 257745562 -24448102 - MER5B DNA MER1_type 0 178 3 315 122 0 0 chr1 257746130 257746179 -24447485 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 206 174 0 chr1 257746754 257746909 -24446755 + L2 LINE L2 3118 3299 -14 585 144 0 0 chr1 257746913 257747017 -24446647 + (GGGA)n Simple_repeat Simple_repeat 4 107 0 237 253 35 106 chr1 257747017 257747187 -24446477 + MIR3 SINE MIR 19 176 -32 1372 234 56 36 chr1 257747652 257748097 -24445567 - LTR37B LTR ERV1 0 468 15 2155 119 0 3 chr1 257748100 257748394 -24445270 - AluSq SINE Alu -20 293 1 1528 75 0 0 chr1 257749008 257749196 -24444468 - AluSg/x SINE Alu -4 308 121 3122 110 36 67 chr1 257749296 257749852 -24443812 + LTR9B LTR ERV1 106 644 0 617 234 76 35 chr1 257749953 257750124 -24443540 + MLT1K LTR MaLR 395 572 -16 222 118 0 0 chr1 257750427 257750461 -24443203 + (CA)n Simple_repeat Simple_repeat 1 34 0 198 311 66 66 chr1 257751346 257751452 -24442212 - L2 LINE L2 -6 3266 3161 712 202 112 19 chr1 257751471 257751704 -24441960 - AluJb SINE Alu -14 298 1 216 250 125 144 chr1 257752489 257752598 -24441066 + MIR SINE MIR 6 116 -146 2418 111 103 23 chr1 257752598 257752929 -24440735 + MSTA LTR MaLR 1 371 -57 2090 119 34 0 chr1 257752929 257753102 -24440562 - AluSg SINE Alu -6 304 115 189 0 0 0 chr1 257753102 257753123 -24440541 + (TG)n Simple_repeat Simple_repeat 2 22 0 2090 119 34 0 chr1 257753123 257753243 -24440421 - AluSg SINE Alu -195 115 1 2418 111 103 23 chr1 257753243 257753307 -24440357 + MSTA LTR MaLR 371 428 0 216 250 125 144 chr1 257753307 257753453 -24440211 + MIR SINE MIR 116 256 -6 328 255 92 35 chr1 257753690 257753831 -24439833 + L2 LINE L2 3123 3271 -1 292 261 42 70 chr1 257754514 257754656 -24439008 - MIR SINE MIR -78 184 47 469 293 48 7 chr1 257755819 257755966 -24437698 - MIR SINE MIR -64 198 46 3612 170 28 66 chr1 257755973 257756287 -24437377 - LTR39 LTR ERV1 -1 782 457 2110 141 0 0 chr1 257756287 257756586 -24437078 + AluSx SINE Alu 1 299 -13 3612 170 28 66 chr1 257756586 257756888 -24436776 - LTR39 LTR ERV1 -326 457 198 1012 34 17 0 chr1 257756888 257757007 -24436657 - L1PA4 LINE L1 -1 6154 6034 3612 170 28 66 chr1 257757007 257757142 -24436522 - LTR39 LTR ERV1 -585 198 59 522 278 128 32 chr1 257757642 257757923 -24435741 - L2 LINE L2 -11 3302 2995 2164 94 0 21 chr1 257758163 257758474 -24435190 + AluSg SINE Alu 1 305 0 242 366 0 11 chr1 257758478 257758571 -24435093 + LTR33 LTR ERVL 66 157 -364 471 227 125 0 chr1 257758666 257758794 -24434870 + LTR33 LTR ERVL 378 521 0 689 255 30 69 chr1 257759087 257759318 -24434346 + MIR SINE MIR 28 249 -13 395 329 134 32 chr1 257760041 257760247 -24433417 + L2 LINE L2 2260 2444 -870 2103 148 0 0 chr1 257760247 257760551 -24433113 - AluSc SINE Alu -5 304 1 395 329 134 32 chr1 257760551 257760903 -24432761 + L2 LINE L2 2444 2875 -439 605 242 56 110 chr1 257761039 257761326 -24432338 - MLT1H LTR MaLR -167 375 109 2295 72 0 69 chr1 257761326 257761659 -24432005 - AluY SINE Alu -1 310 1 605 242 56 110 chr1 257761659 257761705 -24431959 - MLT1H LTR MaLR -433 109 62 183 129 0 0 chr1 257762170 257762201 -24431463 + (CAA)n Simple_repeat Simple_repeat 2 32 0 238 244 158 0 chr1 257762243 257762325 -24431339 - L1ME4a LINE L1 -23 6098 6004 243 254 0 0 chr1 257763645 257763700 -24429964 + (TG)n Simple_repeat Simple_repeat 2 56 0 609 239 137 9 chr1 257764432 257764716 -24428948 + MLT1I LTR MaLR 35 406 -3 261 197 0 0 chr1 257765629 257765700 -24427964 + T-rich Low_complexity Low_complexity 1 71 0 2324 100 3 7 chr1 257765702 257766011 -24427653 - AluSg SINE Alu -2 308 1 326 260 13 13 chr1 257766337 257766414 -24427250 + L3 LINE CR1 558 634 -943 2234 128 7 0 chr1 257767672 257767978 -24425686 + AluSx SINE Alu 1 308 -4 1396 181 24 42 chr1 257768035 257768323 -24425341 + AluJo SINE Alu 24 306 -6 2135 136 0 0 chr1 257768454 257768755 -24424909 + AluSx SINE Alu 1 301 -11 412 300 163 18 chr1 257769180 257769407 -24424257 - MIR SINE MIR -1 261 2 357 287 57 68 chr1 257769415 257769609 -24424055 + L3 LINE CR1 661 853 -724 2117 107 3 0 chr1 257769609 257769921 -24423743 + AluSg SINE Alu 1 310 0 357 287 57 68 chr1 257769921 257769991 -24423673 + L3 LINE CR1 853 922 -655 451 223 101 36 chr1 257770008 257770101 -24423563 - LTR33 LTR ERVL -2 519 433 2287 153 60 24 chr1 257770101 257770250 -24423414 + MSTB1 LTR MaLR 1 143 -289 2278 95 0 3 chr1 257770250 257770544 -24423120 - AluSq SINE Alu -16 297 5 2287 153 60 24 chr1 257770544 257770794 -24422870 + MSTB1 LTR MaLR 143 418 -14 348 24 0 0 chr1 257770794 257770835 -24422829 + (CA)n Simple_repeat Simple_repeat 2 42 0 2287 153 60 24 chr1 257770835 257770851 -24422813 + MSTB1 LTR MaLR 418 432 0 451 223 101 36 chr1 257770851 257770896 -24422768 - LTR33 LTR ERVL -88 433 372 490 278 47 24 chr1 257770973 257771142 -24422522 - LTR33 LTR ERVL -348 173 1 375 320 165 48 chr1 257771153 257771712 -24421952 + L3 LINE CR1 944 1567 -10 306 254 175 0 chr1 257772261 257772375 -24421289 + L1ME4a LINE L1 5984 6117 -4 261 357 54 0 chr1 257773053 257773165 -24420499 - MER5B DNA MER1_type -60 118 1 1108 237 123 10 chr1 257774107 257774407 -24419257 + MLT1C LTR MaLR 134 467 0 358 340 162 11 chr1 257774683 257774954 -24418710 + L2 LINE L2 2890 3201 -112 817 184 110 22 chr1 257774963 257775208 -24418456 + AluJb SINE Alu 1 310 -2 198 311 66 66 chr1 257775218 257775324 -24418340 + L2 LINE L2 3161 3266 -6 222 118 0 0 chr1 257776208 257776242 -24417422 + (TG)n Simple_repeat Simple_repeat 1 34 0 206 128 26 0 chr1 257776402 257776441 -24417223 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 945 218 0 29 chr1 257776463 257776637 -24417027 - FAM SINE Alu -3 172 4 6073 97 27 1 chr1 257776708 257777573 -24416091 + L1PA14 LINE L1 5275 6161 0 186 213 64 0 chr1 257777632 257777679 -24415985 - MIR SINE MIR -113 149 100 2174 106 0 26 chr1 257777710 257778022 -24415642 + AluSq SINE Alu 1 304 -9 198 257 86 14 chr1 257778520 257778590 -24415074 + L2 LINE L2 3239 3313 0 504 325 94 48 chr1 257778681 257779219 -24414445 + L2 LINE L2 2716 3271 -1 941 314 48 40 chr1 257780342 257780737 -24412927 + MLT1E LTR MaLR 22 419 -174 671 290 97 47 chr1 257780838 257781303 -24412361 + L1ME3A LINE L1 347 834 -5285 233 280 49 49 chr1 257781686 257781829 -24411835 + MLT2E LTR ERVL 480 622 -6 281 233 194 0 chr1 257781977 257782080 -24411584 - L2 LINE L2 -871 2443 2321 234 242 67 74 chr1 257782294 257782443 -24411221 + MER65A LTR ERV1 298 445 0 254 342 8 0 chr1 257782449 257782566 -24411098 - L1M4 LINE L1 -2505 3641 3524 1190 287 71 14 chr1 257782730 257783389 -24410275 + L2 LINE L2 2616 3309 -4 559 228 16 31 chr1 257783389 257783582 -24410082 + L1ME3A LINE L1 3777 3966 -2163 304 281 120 16 chr1 257783579 257783771 -24409893 + L1ME3A LINE L1 4488 4699 -1430 * 1939 220 37 26 chr1 257783968 257784458 -24409206 + MLT1D LTR MaLR 1 495 -10 1116 275 123 22 chr1 257784458 257785398 -24408266 + L1ME3A LINE L1 4906 5930 -223 29 47 0 0 chr1 257785796 257785839 -24407825 + AT_rich Low_complexity Low_complexity 1 43 0 2320 126 29 45 chr1 257785923 257786304 -24407360 - THE1C LTR MaLR 0 375 1 243 250 12 116 chr1 257787377 257787492 -24406172 - L2 LINE L2 -5 3308 3213 2275 115 0 0 chr1 257787492 257787796 -24405868 - AluSq SINE Alu -9 304 1 243 250 12 116 chr1 257787796 257787844 -24405820 - L2 LINE L2 -100 3213 3162 1856 109 3 65 chr1 257788282 257788575 -24405089 - AluSx SINE Alu -1 311 37 742 122 0 28 chr1 257788577 257788684 -24404980 - AluJo/FLAM SINE Alu -180 132 29 726 158 0 0 chr1 257788688 257788789 -24404875 + FLAM_C SINE Alu 3 103 -40 438 198 47 0 chr1 257788790 257788896 -24404768 + L1M3c LINE L1 1348 1458 -4683 1769 98 0 0 chr1 257788896 257789120 -24404544 + AluSg SINE Alu 1 224 -86 814 143 0 8 chr1 257789220 257789346 -24404318 + AluSp/q SINE Alu 180 304 -9 2040 125 4 0 chr1 257790144 257790425 -24403239 - AluSg SINE Alu -28 282 1 1862 150 10 10 chr1 257791172 257791478 -24402186 - AluSx SINE Alu -4 308 3 1767 123 4 11 chr1 257791891 257792152 -24401512 - AluSq SINE Alu -9 304 46 486 151 27 0 chr1 257792152 257792225 -24401439 - AluS SINE Alu -236 76 2 225 0 0 0 chr1 257792430 257792455 -24401209 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1857 153 0 4 chr1 257792456 257792737 -24400927 - AluSq SINE Alu -33 280 1 1653 173 88 16 chr1 257793872 257794190 -24399474 + MSTD LTR MaLR 1 341 -55 266 169 34 0 chr1 257794191 257794250 -24399414 + CT-rich Low_complexity Low_complexity 2 62 0 297 0 0 0 chr1 257794282 257794315 -24399349 + (CGTG)n Simple_repeat Simple_repeat 1 33 0 480 152 0 36 chr1 257794334 257794446 -24399218 + CT-rich Low_complexity Low_complexity 4 111 0 338 197 0 0 chr1 257794446 257794512 -24399152 + MSTD LTR MaLR 330 395 -1 900 201 42 123 chr1 257794995 257795328 -24398336 - L1MC4 LINE L1 -938 7069 6718 1858 80 0 0 chr1 257797039 257797263 -24396401 - AluSq SINE Alu -87 226 3 438 36 0 0 chr1 257797587 257797643 -24396021 + (TG)n Simple_repeat Simple_repeat 2 57 0 1618 195 7 0 chr1 257797644 257797926 -24395738 - AluJb SINE Alu -28 284 1 1053 138 0 0 chr1 257798347 257798492 -24395172 - AluJb SINE Alu -38 274 130 547 176 9 65 chr1 257798503 257798611 -24395053 - MER8 DNA MER2_type -134 105 4 649 165 29 0 chr1 257798831 257798934 -24394730 + U6 snRNA snRNA 2 107 0 328 277 27 98 chr1 257798976 257799099 -24394565 - L1MC4 LINE L1 -2118 5690 5589 573 154 65 65 chr1 257799099 257799222 -24394442 + FLAM_C SINE Alu 4 126 -7 328 277 27 98 chr1 257799222 257799322 -24394342 - L1MC4 LINE L1 -2219 5589 5483 1823 94 4 0 chr1 257799384 257799618 -24394046 - AluSg SINE Alu -14 296 62 292 261 42 70 chr1 257799760 257799902 -24393762 + MIR SINE MIR 47 184 -78 328 255 92 35 chr1 257800582 257800723 -24392941 - L2 LINE L2 -1 3271 3123 184 267 123 96 chr1 257800960 257801106 -24392558 - MIR SINE MIR -6 256 107 420 95 95 0 chr1 257801106 257801169 -24392495 - MSTA LTR MaLR 0 428 360 894 117 0 0 chr1 257801170 257801290 -24392374 + AluSg SINE Alu 1 120 -190 189 0 0 0 chr1 257801290 257801311 -24392353 + (CA)n Simple_repeat Simple_repeat 2 22 0 1741 129 57 7 chr1 257801319 257801599 -24392065 + AluSp SINE Alu 5 298 -15 2530 60 0 0 chr1 257801804 257802104 -24391560 + AluY SINE Alu 1 300 -11 200 298 0 0 chr1 257802122 257802179 -24391485 - L2 LINE L2 -1893 1421 1365 917 336 75 31 chr1 257802204 257802808 -24390856 - L2 LINE L2 0 3313 2681 2241 79 0 69 chr1 257804295 257804613 -24389051 - AluSx SINE Alu -16 296 1 1622 193 27 10 chr1 257804783 257805084 -24388580 + AluJb SINE Alu 1 306 -6 361 308 9 0 chr1 257806880 257806987 -24386677 + MIR SINE MIR 38 145 -63 481 108 0 12 chr1 257807002 257807085 -24386579 + L1PA11 LINE L1 6091 6172 -2 1110 248 93 30 chr1 257807126 257807426 -24386238 + L2 LINE L2 2765 3109 -204 252 0 0 0 chr1 257807426 257807454 -24386210 + (CA)n Simple_repeat Simple_repeat 2 29 0 1110 248 93 30 chr1 257807454 257807656 -24386008 + L2 LINE L2 3109 3297 -16 483 152 22 11 chr1 257807676 257807768 -24385896 - MIR SINE MIR -120 142 50 821 259 32 0 chr1 257808184 257808400 -24385264 - LTR33 LTR ERVL -298 223 1 1409 303 162 44 chr1 257808447 257808657 -24385007 - L2 LINE L2 -291 3022 2838 790 196 69 17 chr1 257808657 257808830 -24384834 - MER5A DNA MER1_type -4 185 4 1409 303 162 44 chr1 257808830 257808881 -24384783 - L2 LINE L2 -475 2838 2794 1253 164 23 0 chr1 257808881 257809101 -24384563 + L1MB7 LINE L1 5941 6165 -19 1409 303 162 44 chr1 257809101 257810100 -24383564 - L2 LINE L2 -519 2794 1618 343 192 30 61 chr1 257810671 257810770 -24382894 + L1ME4a LINE L1 5946 6041 -80 2207 135 41 0 chr1 257811021 257811385 -24382279 + L1MB7 LINE L1 5782 6160 -24 1380 173 102 26 chr1 257811443 257811709 -24381955 + AluJb SINE Alu 1 286 -26 479 300 91 55 chr1 257812387 257812519 -24381145 + L1ME LINE L1 5321 5447 -674 1452 130 30 4 chr1 257812519 257812749 -24380915 - MER46A DNA MER2_type 0 236 1 479 300 91 55 chr1 257812749 257813046 -24380618 + L1ME LINE L1 5447 5762 -359 2358 59 3 3 chr1 257813215 257813501 -24380163 + AluY SINE Alu 1 286 -25 1685 176 0 47 chr1 257813502 257813821 -24379843 + AluJo SINE Alu 4 307 -5 333 0 0 0 chr1 257813879 257813916 -24379748 + (TA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr1 257813999 257814032 -24379632 + AT_rich Low_complexity Low_complexity 1 33 0 253 265 161 37 chr1 257816290 257816612 -24377052 - L2 LINE L2 -196 3117 2742 554 285 0 0 chr1 257816613 257816743 -24376921 + MER5A DNA MER1_type 2 131 -58 203 152 0 0 chr1 257816766 257816799 -24376865 - L2 LINE L2 -565 2749 2717 397 325 40 0 chr1 257818098 257818224 -24375440 - L2 LINE L2 0 3272 3142 29 0 0 0 chr1 257820008 257820037 -24373627 + AT_rich Low_complexity Low_complexity 1 29 0 296 287 164 66 chr1 257820269 257820708 -24372956 + L2 LINE L2 2829 3310 -3 537 114 13 0 chr1 257821042 257821121 -24372543 - MADE1 DNA Mariner 0 80 1 186 167 0 0 chr1 257821403 257821439 -24372225 + T-rich Low_complexity Low_complexity 1 36 0 289 353 123 0 chr1 257821576 257821763 -24371901 + MIR SINE MIR 21 230 -32 1968 107 35 35 chr1 257822056 257822346 -24371318 + AluSx SINE Alu 1 290 -22 1952 91 33 18 chr1 257823371 257823670 -24369994 + AluSg1 SINE Alu 3 305 0 2162 60 21 102 chr1 257824301 257824635 -24369029 - AluSx SINE Alu -5 307 1 802 172 110 0 chr1 257824692 257824855 -24368809 - MER3 DNA MER1_type 0 209 29 27 0 0 0 chr1 257824962 257824989 -24368675 + AT_rich Low_complexity Low_complexity 1 27 0 2240 87 21 0 chr1 257825580 257825867 -24367797 - AluSc SINE Alu -16 293 1 532 98 0 0 chr1 257825946 257826028 -24367636 + L1MB4 LINE L1 6097 6178 -2 458 230 123 64 chr1 257826337 257826572 -24367092 - MIR SINE MIR -12 250 2 204 40 0 0 chr1 257828184 257828209 -24365455 + (CGG)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr1 257828252 257828284 -24365380 + GC_rich Low_complexity Low_complexity 1 32 0 43 47 0 0 chr1 257828387 257828451 -24365213 + GC_rich Low_complexity Low_complexity 1 64 0 326 177 0 0 chr1 257829034 257829096 -24364568 + L1MB4 LINE L1 6118 6179 -1 2358 77 3 3 chr1 257829578 257829875 -24363789 + AluSq SINE Alu 3 299 -14 1726 257 159 3 chr1 257829947 257830777 -24362887 - L2 LINE L2 0 3313 2330 4074 90 4 4 chr1 257830836 257831392 -24362272 - L1PA14 LINE L1 0 6161 5606 774 246 254 11 chr1 257832455 257832833 -24360831 - L2 LINE L2 -40 3273 2804 1789 171 0 7 chr1 257833110 257833396 -24360268 - AluJo SINE Alu -17 295 12 215 371 114 0 chr1 257833516 257833621 -24360043 + L2 LINE L2 3133 3249 -23 1653 181 33 10 chr1 257833767 257834070 -24359594 + MER58B DNA MER1_type 2 311 -30 250 282 42 0 chr1 257834087 257834158 -24359506 + L2 LINE L2 2673 2746 -568 651 305 73 6 chr1 257834616 257834970 -24358694 + L2 LINE L2 1802 2179 -1135 973 189 6 11 chr1 257835022 257835202 -24358462 - AluJo SINE Alu -13 299 121 2254 105 3 0 chr1 257835223 257835518 -24358146 - AluSp SINE Alu -15 298 3 687 226 0 22 chr1 257835521 257835658 -24358006 - AluJo SINE Alu -178 134 1 745 217 89 0 chr1 257835694 257835851 -24357813 + MER3 DNA MER1_type 39 209 0 524 282 92 20 chr1 257835703 257835898 -24357766 - MER3 DNA MER1_type 0 209 1 * 415 357 45 8 chr1 257835916 257836182 -24357482 + L2 LINE L2 2330 2605 -709 258 356 39 10 chr1 257836455 257836559 -24357105 + L2 LINE L2 3134 3240 -32 213 204 0 0 chr1 257836561 257836605 -24357059 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 2021 120 6 60 chr1 257836838 257836967 -24356697 + AluSx SINE Alu 1 135 -177 2183 127 0 0 chr1 257836967 257837266 -24356398 + AluSx SINE Alu 1 299 -13 2021 120 6 60 chr1 257837266 257837453 -24356211 + AluSx SINE Alu 135 300 -12 2130 98 7 36 chr1 257838027 257838332 -24355332 + AluSx SINE Alu 1 296 -16 264 132 13 118 chr1 257838495 257838571 -24355093 - MER57A LTR ERV1 -41 362 295 280 180 20 0 chr1 257839985 257840035 -24353629 + AluJo SINE Alu 123 173 -129 180 250 39 0 chr1 257840100 257840152 -24353512 - L2 LINE L2 -5 3267 3214 1996 117 60 0 chr1 257840196 257840478 -24353186 + AluSx SINE Alu 1 299 -13 687 279 22 45 chr1 257840478 257840700 -24352964 - MIR SINE MIR -40 222 6 445 224 62 37 chr1 257841181 257841342 -24352322 - MIR SINE MIR 0 262 98 707 293 99 53 chr1 257841380 257841467 -24352197 - L2 LINE L2 -36 3277 3195 1597 187 0 17 chr1 257841467 257841800 -24351864 - AluJb SINE Alu 0 312 1 707 293 99 53 chr1 257841800 257842105 -24351559 - L2 LINE L2 -118 3195 2867 375 229 55 0 chr1 257843315 257843424 -24350240 - MIR SINE MIR -59 203 89 400 196 42 35 chr1 257843479 257843496 -24350168 - L1MA10 LINE L1 -1 6333 6317 1074 228 57 0 chr1 257843496 257843777 -24349887 - L1ME2 LINE L1 -9 6155 5859 2363 97 3 0 chr1 257843885 257844184 -24349480 - AluSp SINE Alu -13 300 1 1212 136 5 10 chr1 257844309 257844508 -24349156 - L1MA9 LINE L1 -1 6311 6114 798 235 154 33 chr1 257844517 257844731 -24348933 - L1MA4A LINE L1 -436 5867 5680 1846 96 55 38 chr1 257844731 257845022 -24348642 - AluSx SINE Alu -16 296 1 798 235 154 33 chr1 257845022 257845410 -24348254 - L1MA4A LINE L1 -623 5680 5185 842 57 0 40 chr1 257845416 257845540 -24348124 - L1PA8 LINE L1 -2 6170 6052 29999 115 18 66 chr1 257847329 257850313 -24343351 - L1PA8 LINE L1 -101 6071 3562 2296 98 7 0 chr1 257850313 257850610 -24343054 - AluSg SINE Alu -11 299 1 29999 115 18 66 chr1 257850610 257854009 -24339655 - L1PA8 LINE L1 -2610 3562 2 1527 202 60 29 chr1 257854009 257854217 -24339447 - L1ME2 LINE L1 -948 5198 4998 2543 99 34 0 chr1 257854217 257854569 -24339095 + THE1B LTR MaLR 1 364 0 1527 202 60 29 chr1 257854569 257854776 -24338888 - L1ME2 LINE L1 -1148 4998 4770 693 295 54 45 chr1 257854792 257855124 -24338540 - L1MEc LINE L1 -6025 371 37 276 77 0 0 chr1 257855193 257855232 -24338432 + (CAG)n Simple_repeat Simple_repeat 2 40 0 1779 184 0 7 chr1 257856089 257856382 -24337282 + AluJo SINE Alu 5 295 -17 540 268 113 0 chr1 257856597 257856765 -24336899 + MIR SINE MIR 61 247 -15 559 152 74 81 chr1 257856988 257857065 -24336599 + MLT1A1 LTR MaLR 1 77 -297 2317 107 7 0 chr1 257857065 257857375 -24336289 + AluSq SINE Alu 1 312 -1 559 152 74 81 chr1 257857375 257857463 -24336201 + MLT1A1 LTR MaLR 77 191 -183 1474 107 5 5 chr1 257857584 257857780 -24335884 - AluSx SINE Alu -116 196 1 242 223 54 80 chr1 257857832 257857944 -24335720 + MIR SINE MIR 101 209 -53 784 111 12 51 chr1 257857988 257858137 -24335527 + MLT1A1 LTR MaLR 239 363 -2 1739 172 41 0 chr1 257859419 257859710 -24333954 + AluJb SINE Alu 1 303 -9 858 224 42 42 chr1 257859740 257860048 -24333616 + L1MC5 LINE L1 7625 7932 -29 201 306 0 0 chr1 257860049 257860098 -24333566 + L3 LINE CR1 1247 1295 -282 398 201 30 104 chr1 257860182 257860316 -24333348 + L1MC5 LINE L1 7185 7308 -653 1760 221 143 37 chr1 257860346 257860912 -24332752 - MLT1E2 LTR MaLR 0 626 1 544 189 83 15 chr1 257860912 257861044 -24332620 - L1MA10 LINE L1 -18 6316 6176 1919 192 16 0 chr1 257861050 257861373 -24332291 - MLT1A1 LTR MaLR 0 365 38 2180 186 29 88 chr1 257861406 257861728 -24331936 - L1ME1 LINE L1 -165 6001 5732 2222 132 3 0 chr1 257861728 257862039 -24331625 + AluSx SINE Alu 1 312 0 2180 186 29 88 chr1 257862039 257862341 -24331323 - L1ME1 LINE L1 -434 5732 5414 757 194 21 34 chr1 257862366 257862627 -24331037 - L1ME1 LINE L1 -2282 5503 5255 411 200 44 0 chr1 257862630 257862720 -24330944 + L1MC5 LINE L1 7293 7386 -575 2078 143 3 10 chr1 257862720 257863028 -24330636 - MER1B DNA MER1_type 0 339 34 616 228 72 47 chr1 257863030 257863306 -24330358 + L1MC5 LINE L1 7380 7662 -299 415 175 114 54 chr1 257863318 257863484 -24330180 + L1MC5 LINE L1 7751 7926 -35 484 328 45 8 chr1 257863550 257863950 -24329714 + L1M4 LINE L1 3047 3461 -2685 484 215 60 106 chr1 257863979 257864263 -24329401 + L1M4 LINE L1 4456 4726 -1420 * 1074 88 25 13 chr1 257864243 257864402 -24329262 + L1MC1 LINE L1 5855 6015 -318 2136 134 0 6 chr1 257864501 257864815 -24328849 + AluJb SINE Alu 1 312 0 753 219 143 38 chr1 257864877 257865192 -24328472 + MER7A DNA MER2_type 1 346 0 182 114 0 29 chr1 257865233 257865251 -24328413 + (TAA)n Simple_repeat Simple_repeat 1 19 -15 2165 122 0 20 chr1 257865251 257865555 -24328109 + AluSx SINE Alu 1 298 -14 182 114 0 29 chr1 257865555 257865571 -24328093 + (TAA)n Simple_repeat Simple_repeat 19 34 0 245 238 79 8 chr1 257865804 257865930 -24327734 + L1MCa LINE L1 2331 2465 -3961 2211 74 57 0 chr1 257865967 257866250 -24327414 - AluSc SINE Alu -10 299 1 2130 78 10 49 chr1 257866759 257866902 -24326762 + AluY SINE Alu 1 127 -184 2737 32 0 3 chr1 257866902 257867214 -24326450 + AluY SINE Alu 1 311 0 2130 78 10 49 chr1 257867214 257867376 -24326288 + AluY SINE Alu 127 294 -17 680 201 190 55 chr1 257867408 257867901 -24325763 + MLT1E2 LTR MaLR 1 538 -88 749 100 8 54 chr1 257868119 257868249 -24325415 + AluSg/x SINE Alu 187 310 0 922 228 24 0 chr1 257868256 257868693 -24324971 + L1M2c LINE L1 2023 2563 -4226 461 135 13 8 chr1 257868700 257868931 -24324733 + AluSq SINE Alu 5 313 0 2220 115 0 0 chr1 257872017 257872322 -24321342 - AluSg SINE Alu -5 305 1 2455 134 72 21 chr1 257873757 257874175 -24319489 - MER1A DNA MER1_type -90 439 1 268 200 44 44 chr1 257874421 257874511 -24319153 - LTR33A LTR ERVL -2 521 432 5748 121 32 20 chr1 257874630 257875548 -24318116 + MER11C LTR ERVK 143 1071 0 183 320 93 31 chr1 257875675 257875772 -24317892 + MIR SINE MIR 85 187 -75 180 0 0 0 chr1 257876302 257876322 -24317342 + (A)n Simple_repeat Simple_repeat 1 20 0 645 171 0 0 chr1 257876447 257876552 -24317112 - AluJb SINE Alu -13 299 195 1267 235 7 26 chr1 257876564 257876866 -24316798 - AluJo SINE Alu -16 296 1 315 228 48 48 chr1 257876904 257877013 -24316651 + L1ME LINE L1 5723 5820 -301 3680 53 2 2 chr1 257877175 257877626 -24316038 + L1PA7 LINE L1 5700 6150 -4 296 315 96 17 chr1 257877921 257878099 -24315565 - MIR SINE MIR -42 220 29 941 126 0 0 chr1 257878306 257878433 -24315231 - FLAM_C SINE Alu -16 127 1 2149 117 0 13 chr1 257879869 257880167 -24313497 + AluSx SINE Alu 1 294 -18 196 242 16 32 chr1 257883737 257883799 -24309865 - L2 LINE L2 -7 3265 3205 196 108 46 46 chr1 257884986 257885051 -24308613 + (CATA)n Simple_repeat Simple_repeat 2 66 0 3002 174 24 8 chr1 257885773 257886278 -24307386 + MER44D DNA MER2_type 2 569 -36 4796 161 19 15 chr1 257888829 257889702 -24303962 + L1MB3 LINE L1 5305 6181 -2 597 173 170 1 chr1 257890563 257890700 -24302964 + MLT1C LTR MaLR 336 465 -2 435 301 83 30 chr1 257892526 257892865 -24300799 + L1 LINE L1 2963 3319 -2827 229 188 0 31 chr1 257892867 257892931 -24300733 + L1MC5 LINE L1 7473 7534 -427 226 350 0 0 chr1 257895279 257895396 -24298268 + C-rich Low_complexity Low_complexity 1 117 0 1545 232 170 6 chr1 257895783 257896313 -24297351 + L1ME3A LINE L1 5553 6169 -1 1883 56 0 0 chr1 257896318 257896534 -24297130 + AluY SINE Alu 83 298 -13 375 23 0 0 chr1 257896540 257896584 -24297080 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr1 257896646 257896667 -24296997 + AT_rich Low_complexity Low_complexity 1 21 0 883 136 0 7 chr1 257896760 257896900 -24296764 + AluJo SINE Alu 1 139 -173 263 286 71 67 chr1 257897715 257897970 -24295694 + L1MC4a LINE L1 6361 6616 -1192 1973 147 11 39 chr1 257897978 257898338 -24295326 + MER47A DNA MER2_type 17 366 0 1823 156 60 141 chr1 257898397 257898571 -24295093 + L1MC1 LINE L1 5193 5379 -790 2222 122 3 0 chr1 257898571 257898875 -24294789 + AluSx SINE Alu 1 305 -7 1823 156 60 141 chr1 257898875 257899279 -24294385 + L1MC1 LINE L1 5379 5746 -423 2997 135 7 2 chr1 257899280 257899738 -24293926 + L1MC1 LINE L1 5869 6328 -5 405 290 92 53 chr1 257899767 257899872 -24293792 + L1MC4a LINE L1 5543 5643 -2165 2383 85 7 0 chr1 257899872 257900166 -24293498 + AluSx SINE Alu 3 298 -14 405 290 92 53 chr1 257900166 257900259 -24293405 + L1MC4a LINE L1 5643 5731 -2077 2460 60 0 10 chr1 257900259 257900560 -24293104 + AluY SINE Alu 14 311 0 405 290 92 53 chr1 257900560 257900829 -24292835 + L1MC4a LINE L1 5731 6029 -1779 2142 130 0 0 chr1 257901667 257901959 -24291705 - AluSg SINE Alu -18 292 1 1233 116 11 0 chr1 257902600 257902781 -24290883 + MER46B DNA MER2_type 1 58 -178 397 217 0 0 chr1 257902783 257902852 -24290812 + AluS SINE Alu 1 69 -234 1200 142 46 0 chr1 257903326 257903523 -24290141 + MER46B DNA MER2_type 1 81 -155 1264 137 18 189 chr1 257903529 257903655 -24290009 + AluSx SINE Alu 21 53 -259 2302 95 16 0 chr1 257903655 257903960 -24289704 + AluSq SINE Alu 1 310 -3 1264 137 18 189 chr1 257903960 257904176 -24289488 + AluSx SINE Alu 53 304 -8 1287 88 44 0 chr1 257904176 257904357 -24289307 + MER46B DNA MER2_type 47 235 -1 836 141 0 0 chr1 257904804 257904925 -24288739 + FRAM SINE Alu 26 146 -30 261 0 0 0 chr1 257904928 257904957 -24288707 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1458 240 190 43 chr1 257905682 257906048 -24287616 + L1MC4 LINE L1 7374 7685 -357 2031 132 143 13 chr1 257906048 257906427 -24287237 + MSTA LTR MaLR 1 428 0 1458 240 190 43 chr1 257906427 257906635 -24287029 + L1MC4 LINE L1 7685 8032 -10 2056 158 13 31 chr1 257906824 257907205 -24286459 - THE1C LTR MaLR 0 375 2 2107 89 4 0 chr1 257907348 257907617 -24286047 + AluSq SINE Alu 1 270 -43 725 243 22 56 chr1 257907635 257907689 -24285975 - MIR SINE MIR 0 262 208 1750 135 12 65 chr1 257907689 257908014 -24285650 - AluJb SINE Alu -4 308 1 725 243 22 56 chr1 257908014 257908227 -24285437 - MIR SINE MIR -54 208 4 2258 115 3 0 chr1 257908394 257908698 -24284966 + AluSq SINE Alu 1 305 -8 195 42 0 0 chr1 257908698 257908722 -24284942 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 2451 114 74 0 chr1 257910382 257910732 -24282932 - MER51B LTR ERV1 -1 376 1 239 247 270 0 chr1 257911236 257911325 -24282339 - L2 LINE L2 -1 3271 3159 669 216 0 0 chr1 257911601 257911717 -24281947 + MLT1D LTR MaLR 7 122 -383 222 62 0 0 chr1 257912143 257912175 -24281489 + (A)n Simple_repeat Simple_repeat 1 32 0 1742 203 24 42 chr1 257912175 257912584 -24281080 + MLT1D LTR MaLR 104 505 0 2033 143 0 0 chr1 257912589 257912882 -24280782 - AluSx SINE Alu -19 293 1 611 240 66 16 chr1 257912934 257913117 -24280547 + HAL1 LINE L1 2247 2438 -69 526 173 147 86 chr1 257913235 257913307 -24280357 - MER3 DNA MER1_type 0 209 143 2232 114 0 13 chr1 257913307 257913615 -24280049 + AluSx SINE Alu 1 304 -8 526 173 147 86 chr1 257913615 257913739 -24279925 - MER3 DNA MER1_type -66 143 1 304 167 45 15 chr1 257913922 257913988 -24279676 - MLT1G LTR MaLR -4 586 519 719 212 158 39 chr1 257913989 257914248 -24279416 - MLT1H1 LTR MaLR -263 292 3 200 227 0 0 chr1 257914467 257914511 -24279153 + T-rich Low_complexity Low_complexity 1 44 0 1878 137 36 19 chr1 257914698 257915005 -24278659 + AluSx SINE Alu 1 312 0 2350 62 0 42 chr1 257915603 257915911 -24277753 - AluY SINE Alu -16 295 1 255 189 0 0 chr1 257916510 257916563 -24277101 + T-rich Low_complexity Low_complexity 1 53 0 213 121 0 0 chr1 257917327 257917360 -24276304 + (TTA)n Simple_repeat Simple_repeat 3 35 0 1781 110 118 4 chr1 257917426 257917698 -24275966 + AluSq SINE Alu 1 303 -10 1825 158 3 23 chr1 257918106 257918410 -24275254 + AluJo SINE Alu 1 298 -14 2122 129 27 0 chr1 257918454 257918748 -24274916 + AluSx SINE Alu 1 302 -10 228 33 0 0 chr1 257918955 257918985 -24274679 + MIR SINE MIR 109 138 -124 2327 100 0 7 chr1 257919165 257919466 -24274198 - AluSx SINE Alu -13 299 1 210 267 105 35 chr1 257921439 257921525 -24272139 + MIR3 SINE MIR 114 205 -3 232 217 65 0 chr1 257921531 257921577 -24272087 - MIR3 SINE MIR -12 196 148 * 1001 300 91 68 chr1 257921569 257921845 -24271819 - L3 LINE CR1 -105 1472 1204 2224 96 0 4 chr1 257921845 257922159 -24271505 - AluSg SINE Alu 0 313 1 1001 300 91 68 chr1 257922159 257922198 -24271466 - L3 LINE CR1 -373 1204 1167 712 188 51 8 chr1 257922198 257922315 -24271349 - FLAM_A SINE Alu -7 126 5 1001 300 91 68 chr1 257922315 257922670 -24270994 - L3 LINE CR1 -410 1167 785 1233 268 43 5 chr1 257922798 257923168 -24270496 + HAL1 LINE L1 13 396 -2111 1332 222 26 22 chr1 257923273 257923584 -24270080 - AluJo SINE Alu 0 312 1 270 0 0 0 chr1 257923593 257923623 -24270041 + (T)n Simple_repeat Simple_repeat 1 30 0 336 276 11 0 chr1 257923624 257923711 -24269953 + HAL1 LINE L1 637 724 -1783 1659 145 8 4 chr1 257923730 257923978 -24269686 + MER1B DNA MER1_type 31 279 -60 5034 230 111 29 chr1 257923982 257924427 -24269237 + HAL1 LINE L1 750 1157 -1350 2176 129 17 70 chr1 257924427 257924783 -24268881 - MER1B DNA MER1_type 0 337 1 5034 230 111 29 chr1 257924783 257925939 -24267725 + HAL1 LINE L1 1157 2483 -24 2527 164 76 0 chr1 257925948 257926344 -24267320 + MSTB LTR MaLR 1 426 0 306 106 0 0 chr1 257926452 257926499 -24267165 + (A)n Simple_repeat Simple_repeat 1 47 0 339 25 0 0 chr1 257926807 257926847 -24266817 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1768 142 0 15 chr1 257926847 257927114 -24266550 - AluSx SINE Alu -11 301 39 218 234 202 11 chr1 257927114 257927208 -24266456 - L2 LINE L2 -601 2713 2602 227 288 61 0 chr1 257927215 257927281 -24266383 + L2 LINE L2 3193 3262 -10 273 217 116 0 chr1 257927412 257927481 -24266183 - MIR SINE MIR -39 223 147 2161 106 0 23 chr1 257927954 257928255 -24265409 + AluSq SINE Alu 1 294 -19 2228 127 0 0 chr1 257929212 257929512 -24264152 + AluSx SINE Alu 1 300 -12 2143 98 0 0 chr1 257930524 257930798 -24262866 - AluSq SINE Alu 0 313 40 1219 178 51 0 chr1 257930799 257930977 -24262687 - AluJb SINE Alu -2 310 118 213 65 0 0 chr1 257930977 257931008 -24262656 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1219 178 51 0 chr1 257931008 257931043 -24262621 - AluJb SINE Alu -194 118 86 465 234 9 18 chr1 257931097 257931208 -24262456 + MIR SINE MIR 30 139 -123 2327 98 19 3 chr1 257931659 257931966 -24261698 - AluSx SINE Alu 0 312 1 329 240 0 13 chr1 257932015 257932090 -24261574 + MIR SINE MIR 149 222 -40 2010 122 0 0 chr1 257932117 257932387 -24261277 + AluSx SINE Alu 1 270 -42 353 246 109 36 chr1 257932511 257932621 -24261043 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr1 257933008 257933036 -24260628 + AT_rich Low_complexity Low_complexity 1 28 0 1252 189 44 12 chr1 257933163 257933502 -24260162 - L1M4c LINE L1 -4071 2313 1964 308 178 56 22 chr1 257933611 257933701 -24259963 - L1M4c LINE L1 -4846 1538 1446 1036 122 41 25 chr1 257933702 257933898 -24259766 - L1MA5 LINE L1 -1 6299 6101 1826 177 17 0 chr1 257935060 257935360 -24258304 - AluJb SINE Alu -7 305 1 472 374 47 30 chr1 257935523 257936074 -24257590 - L2 LINE L2 -2 3270 2710 496 266 0 9 chr1 257936085 257936198 -24257466 - L2 LINE L2 -5 3308 3197 185 132 26 0 chr1 257936480 257936518 -24257146 + (TA)n Simple_repeat Simple_repeat 2 40 0 26 64 0 0 chr1 257936703 257936750 -24256914 + AT_rich Low_complexity Low_complexity 1 47 0 2347 91 3 0 chr1 257936811 257937107 -24256557 + AluSq SINE Alu 1 297 -16 2111 133 3 0 chr1 257937515 257937816 -24255848 + AluSx SINE Alu 1 302 -10 34 24 0 0 chr1 257937827 257937868 -24255796 + AT_rich Low_complexity Low_complexity 1 41 0 1303 26 13 0 chr1 257937868 257938021 -24255643 - L1PA4 LINE L1 -3 6152 5998 1926 147 0 42 chr1 257938023 257938198 -24255466 - AluSx SINE Alu -13 299 141 2464 88 0 0 chr1 257938198 257938506 -24255158 - AluSq SINE Alu -5 308 1 1926 147 0 42 chr1 257938506 257938642 -24255022 - AluSx SINE Alu -171 141 1 2426 71 0 0 chr1 257938692 257938987 -24254677 + AluY SINE Alu 1 295 -16 1243 126 0 0 chr1 257939015 257939190 -24254474 + AluSq SINE Alu 129 303 -10 271 83 0 0 chr1 257939203 257939239 -24254425 + U1 snRNA snRNA 1 36 -129 777 185 0 0 chr1 257940065 257940184 -24253480 + AluJb SINE Alu 2 120 -192 247 130 0 22 chr1 257940190 257940226 -24253438 + Alu SINE Alu 90 126 -177 1488 128 5 0 chr1 257940226 257940445 -24253219 + AluSp SINE Alu 91 310 -3 2126 135 6 3 chr1 257940627 257940938 -24252726 + AluSx SINE Alu 1 312 0 2153 124 7 3 chr1 257940963 257941270 -24252394 + AluSx SINE Alu 1 308 -4 2251 106 3 0 chr1 257941547 257941839 -24251825 - AluSx SINE Alu -15 297 5 2117 79 43 4 chr1 257941946 257942226 -24251438 - AluSq SINE Alu -22 291 1 818 146 11 11 chr1 257942577 257942755 -24250909 + CT-rich Low_complexity Low_complexity 3 180 0 392 104 15 0 chr1 257942770 257942837 -24250827 + (TC)n Simple_repeat Simple_repeat 1 68 0 1265 159 18 0 chr1 257942945 257943171 -24250493 + L1MB4 LINE L1 5951 6180 0 1436 204 50 57 chr1 257943171 257943357 -24250307 + L1M4c LINE L1 1207 1393 -4991 2621 65 0 0 chr1 257943357 257943666 -24249998 + AluY SINE Alu 1 309 -2 1436 204 50 57 chr1 257943666 257943927 -24249737 + L1M4c LINE L1 1393 1653 -4731 2167 130 7 0 chr1 257943935 257944243 -24249421 + AluSq SINE Alu 3 312 -1 1287 158 62 5 chr1 257944748 257944957 -24248707 + AluJo SINE Alu 9 229 -83 2317 105 0 0 chr1 257945305 257945611 -24248053 + AluSx SINE Alu 5 310 -2 274 317 24 24 chr1 257946000 257946123 -24247541 - MIR SINE MIR -112 150 28 1053 104 0 0 chr1 257946399 257946533 -24247131 + AluSg SINE Alu 1 134 -176 2270 95 20 0 chr1 257946533 257946828 -24246836 + AluSp SINE Alu 1 301 -12 1426 191 3 50 chr1 257946828 257946969 -24246695 - MLT1A1 LTR MaLR -80 285 139 237 33 0 0 chr1 257946969 257946999 -24246665 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2146 109 7 0 chr1 257946999 257947284 -24246380 - AluSx SINE Alu -25 287 1 1426 191 3 50 chr1 257947284 257947440 -24246224 - MLT1A1 LTR MaLR -224 141 1 2478 53 0 3 chr1 257947490 257947790 -24245874 + AluY SINE Alu 1 299 -12 2160 138 0 0 chr1 257947901 257948213 -24245451 - AluSx SINE Alu 0 312 1 1881 161 45 9 chr1 257948254 257948589 -24245075 - MER7A DNA MER2_type 0 346 2 484 236 54 69 chr1 257948594 257948688 -24244976 - L1MC4a LINE L1 -1865 5943 5849 2131 119 3 3 chr1 257948688 257948983 -24244681 - AluSx SINE Alu -17 295 1 2394 95 0 0 chr1 257948983 257949287 -24244377 - AluSx SINE Alu -8 304 1 484 236 54 69 chr1 257949287 257949394 -24244270 - L1MC4a LINE L1 -1957 5851 5744 1402 128 39 99 chr1 257949394 257949676 -24243988 - AluJo SINE Alu -13 299 35 2584 49 0 0 chr1 257949755 257950059 -24243605 + AluY SINE Alu 1 304 -7 201 188 21 21 chr1 257950164 257950212 -24243452 + CT-rich Low_complexity Low_complexity 1 48 0 486 221 228 20 chr1 257950288 257950437 -24243227 - MER5A DNA MER1_type 0 189 10 2295 75 17 0 chr1 257950970 257951262 -24242402 + AluSx SINE Alu 1 297 -15 1837 154 11 0 chr1 257951936 257952221 -24241443 - AluSx SINE Alu -24 288 1 2421 80 0 3 chr1 257952393 257952692 -24240972 - AluSg SINE Alu -12 298 1 409 296 164 14 chr1 257952833 257953046 -24240618 + MIR SINE MIR 2 246 -16 21 0 0 0 chr1 257953903 257953924 -24239740 + AT_rich Low_complexity Low_complexity 1 21 0 2447 67 0 10 chr1 257958138 257958437 -24235227 - AluY SINE Alu -15 296 1 1339 159 48 9 chr1 257958505 257958732 -24234932 + MER46A DNA MER2_type 1 236 0 287 269 47 74 chr1 257959246 257959395 -24234269 + L2 LINE L2 3151 3295 -18 2419 88 0 3 chr1 257959690 257959997 -24233667 + AluSg SINE Alu 1 306 -4 2207 132 26 58 chr1 257960125 257960162 -24233502 + MER47A DNA MER2_type 1 38 -2285 2233 96 0 20 chr1 257960162 257960326 -24233338 - AluSx SINE Alu -15 297 140 2516 56 0 13 chr1 257960326 257960628 -24233036 - AluY SINE Alu -13 298 1 2233 96 0 20 chr1 257960628 257960766 -24232898 - AluSx SINE Alu -172 140 1 2207 132 26 58 chr1 257960766 257961106 -24232558 + MER47A DNA MER2_type 38 366 0 586 123 0 0 chr1 257961121 257961202 -24232462 - AluJ/FLAM SINE Alu -229 83 3 2227 100 3 3 chr1 257961215 257961516 -24232148 - AluSq SINE Alu -12 301 1 347 250 113 70 chr1 257961517 257961801 -24231863 + L1ME4a LINE L1 5620 5915 -206 2161 105 23 3 chr1 257962201 257962506 -24231158 - AluSq SINE Alu -2 311 1 366 350 49 8 chr1 257962526 257962649 -24231015 - L2 LINE L2 -18 3254 3127 2127 133 3 0 chr1 257963100 257963394 -24230270 - AluSx SINE Alu -17 295 1 318 341 195 20 chr1 257964197 257964540 -24229124 - L2 LINE L2 -22 3291 2889 26 74 0 0 chr1 257964623 257964677 -24228987 + AT_rich Low_complexity Low_complexity 1 54 0 2225 102 14 0 chr1 257964828 257965113 -24228551 - AluSq SINE Alu -24 289 1 554 287 129 37 chr1 257965206 257965554 -24228110 + L2 LINE L2 2916 3295 -18 226 198 53 3 chr1 257965664 257965882 -24227782 + AluJo SINE Alu 1 299 -1 2413 72 0 37 chr1 257966465 257966786 -24226878 - AluY SINE Alu -2 309 1 277 154 19 0 chr1 257966894 257966946 -24226718 - MADE1 DNA Mariner 0 80 28 797 192 154 6 chr1 257967486 257967668 -24225996 + MER2 DNA MER2_type 2 210 -135 2332 89 7 0 chr1 257967709 257968011 -24225653 - AluSg SINE Alu -5 305 2 2335 83 0 17 chr1 257968196 257968496 -24225168 - AluY SINE Alu -16 295 1 674 124 0 0 chr1 257968739 257968836 -24224828 + AluSg/x SINE Alu 203 299 -10 2050 124 3 0 chr1 257968891 257969182 -24224482 - AluSg SINE Alu -17 293 2 1285 108 0 0 chr1 257969296 257969472 -24224192 - AluSg/x SINE Alu 0 310 135 319 197 0 16 chr1 257969475 257969536 -24224128 - MER58B DNA MER1_type -33 308 249 252 304 0 13 chr1 257970366 257970445 -24223219 + L2 LINE L2 3179 3256 -57 22 0 0 0 chr1 257970865 257970887 -24222777 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr1 257971086 257971117 -24222547 + AT_rich Low_complexity Low_complexity 1 31 0 2094 106 24 3 chr1 257971127 257971419 -24222245 + AluSx SINE Alu 1 298 -14 4932 172 63 56 chr1 257971560 257972114 -24221550 - L1MB7 LINE L1 -20 6164 5616 2107 123 10 0 chr1 257972114 257972414 -24221250 - AluSx SINE Alu -9 303 1 4932 172 63 56 chr1 257972414 257972677 -24220987 - L1MB7 LINE L1 -568 5616 5356 2007 138 3 0 chr1 257972677 257972967 -24220697 - AluSx SINE Alu -21 291 1 4932 172 63 56 chr1 257972967 257974210 -24219454 - L1MB7 LINE L1 -828 5356 4090 2180 127 0 0 chr1 257974587 257974878 -24218786 - AluSx SINE Alu -21 291 1 2471 64 0 3 chr1 257974932 257975230 -24218434 - AluY SINE Alu -14 297 1 2149 125 3 0 chr1 257975592 257975879 -24217785 - AluSq SINE Alu -25 288 1 1751 164 20 10 chr1 257975934 257976233 -24217431 - AluJo SINE Alu -10 302 1 259 316 138 37 chr1 257976254 257976472 -24217192 + MIR SINE MIR 19 258 -4 193 28 0 56 chr1 257976673 257976709 -24216955 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2001 129 14 0 chr1 257977017 257977311 -24216353 - AluSx SINE Alu -14 298 1 725 231 44 5 chr1 257977402 257977605 -24216059 - Charlie1b DNA MER1_type -167 356 146 * 898 215 105 31 chr1 257977582 257977728 -24215936 - Charlie1 DNA MER1_type -2516 245 75 384 22 0 0 chr1 257977728 257977773 -24215891 + (CA)n Simple_repeat Simple_repeat 2 46 0 898 215 105 31 chr1 257977773 257977854 -24215810 - Charlie1 DNA MER1_type -2686 75 1 1920 129 26 7 chr1 257978102 257978404 -24215260 - AluSx SINE Alu -4 308 1 1976 124 45 0 chr1 257979009 257979300 -24214364 + AluSx SINE Alu 1 304 -8 973 150 12 64 chr1 257979651 257979824 -24213840 + FRAM SINE Alu 1 164 -2 1662 115 12 16 chr1 257979964 257980217 -24213447 + AluSx SINE Alu 54 305 -7 2167 125 0 3 chr1 257980816 257981111 -24212553 - AluSq SINE Alu -19 294 1 273 160 170 32 chr1 257981164 257981258 -24212406 + MER104 DNA Tc2 13 119 -61 229 206 63 0 chr1 257981393 257981456 -24212208 - HsTC2 DNA Tc2 -1829 69 3 909 104 0 15 chr1 257981471 257981605 -24212059 - AluJb SINE Alu -6 306 175 536 127 0 0 chr1 257981605 257981676 -24211988 - AluJ/FLAM SINE Alu -241 71 1 554 293 20 7 chr1 257981810 257981957 -24211707 - MIR3 SINE MIR -22 186 38 250 237 53 26 chr1 257982184 257982298 -24211366 + L1MC4 LINE L1 7460 7576 -466 231 200 20 0 chr1 257982436 257982486 -24211178 + L1MC4 LINE L1 7689 7739 -303 2166 82 7 17 chr1 257982866 257983159 -24210505 + AluSg1 SINE Alu 1 290 -19 828 212 16 98 chr1 257983164 257983419 -24210245 + AluJb SINE Alu 38 271 -41 2420 99 0 0 chr1 257984045 257984357 -24209307 - AluSq SINE Alu -1 312 1 2510 70 0 13 chr1 257985501 257985816 -24207848 + AluY SINE Alu 1 311 0 1357 155 33 33 chr1 257985857 257986102 -24207562 + Charlie1 DNA MER1_type 1 245 -2516 381 164 15 0 chr1 257986101 257986168 -24207496 + Charlie1 DNA MER1_type 2689 2756 -5 * 21 36 0 0 chr1 257986652 257986680 -24206984 + AT_rich Low_complexity Low_complexity 1 28 0 610 120 0 33 chr1 257986693 257986901 -24206763 + AluJb SINE Alu 7 287 -25 297 68 0 0 chr1 257986905 257986949 -24206715 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1505 71 0 6 chr1 257987023 257987206 -24206458 - AluSx SINE Alu -124 188 7 252 0 0 0 chr1 257987478 257987506 -24206158 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1974 81 4 8 chr1 257987513 257987772 -24205892 + AluSx SINE Alu 44 301 -11 189 0 0 0 chr1 257987777 257987798 -24205866 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 1716 108 8 17 chr1 257987804 257988045 -24205619 - AluSq SINE Alu -74 239 1 2258 218 74 55 chr1 257991095 257991209 -24202455 + L1MC4 LINE L1 7102 7212 -830 1798 161 56 15 chr1 257991209 257991551 -24202113 + L1MB7 LINE L1 5812 6167 -17 2258 218 74 55 chr1 257991551 257991688 -24201976 + L1MC4 LINE L1 7212 7345 -697 1754 140 35 7 chr1 257991688 257991974 -24201690 + AluJb SINE Alu 1 294 -18 2258 218 74 55 chr1 257991974 257992450 -24201214 + L1MC4 LINE L1 7345 7844 -198 1953 109 84 0 chr1 257992466 257992751 -24200913 - AluSg SINE Alu -1 309 1 1849 132 56 42 chr1 257992751 257992971 -24200693 + Tigger1 DNA MER2_type 4 232 -2186 1703 195 0 7 chr1 257992971 257993269 -24200395 - AluJb SINE Alu -15 297 2 1849 132 56 42 chr1 257993269 257993403 -24200261 + Tigger1 DNA MER2_type 232 363 -2055 * 4386 124 22 46 chr1 257993401 257993501 -24200163 + Tigger1 DNA MER2_type 1698 1799 -619 2218 104 7 0 chr1 257993501 257993800 -24199864 + AluSx SINE Alu 1 301 -11 4386 124 22 46 chr1 257993800 257994438 -24199226 + Tigger1 DNA MER2_type 1799 2418 0 508 178 104 55 chr1 257994438 257994601 -24199063 + L1MC4 LINE L1 7842 8012 -30 1849 159 14 0 chr1 257994690 257994973 -24198691 - AluJo SINE Alu -22 290 4 1899 152 3 0 chr1 257995896 257996179 -24197485 - AluJb SINE Alu -15 297 14 211 253 22 33 chr1 257996442 257996533 -24197131 + MIR SINE MIR 103 192 -70 2103 141 0 0 chr1 257996894 257997191 -24196473 - AluSx SINE Alu -15 297 1 24 67 0 0 chr1 257997235 257997280 -24196384 + AT_rich Low_complexity Low_complexity 1 45 0 248 326 0 22 chr1 257997405 257997494 -24196170 + 7SK RNA RNA 12 98 -95 2111 224 167 29 chr1 257997881 257998493 -24195171 + LTR41 LTR ERVL 1 696 -77 1967 96 68 11 chr1 257998521 257998802 -24194862 - AluSq SINE Alu -16 297 1 2116 301 83 38 chr1 257998815 257999755 -24193909 + L2 LINE L2 1124 2105 -1209 5611 146 51 20 chr1 257999943 258000589 -24193075 - L1PB3 LINE L1 -3 6151 5527 225 0 0 0 chr1 258000589 258000614 -24193050 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2140 121 0 0 chr1 258000614 258000896 -24192768 - AluSx SINE Alu -30 282 1 5611 146 51 20 chr1 258000896 258001014 -24192650 - L1PB3 LINE L1 -627 5527 5414 2055 146 3 0 chr1 258001014 258001316 -24192348 - AluSx SINE Alu -9 303 1 5611 146 51 20 chr1 258001316 258001889 -24191775 - L1PB3 LINE L1 -740 5414 4762 975 123 0 29 chr1 258001868 258002038 -24191626 + L1PB3 LINE L1 4603 4767 -1379 * 1409 235 62 176 chr1 258002038 258002096 -24191568 + L2 LINE L2 2100 2163 -1150 2168 110 3 0 chr1 258002096 258002395 -24191269 - AluSg SINE Alu 0 310 11 1409 235 62 176 chr1 258002395 258002489 -24191175 + L2 LINE L2 2163 2266 -1047 1565 169 19 49 chr1 258002489 258002797 -24190867 - AluJo SINE Alu -13 299 1 1409 235 62 176 chr1 258002797 258003051 -24190613 + L2 LINE L2 2266 2547 -766 643 141 33 25 chr1 258003051 258003172 -24190492 - L1MB8 LINE L1 -9 6169 6048 1409 235 62 176 chr1 258003172 258003201 -24190463 + L2 LINE L2 2547 2578 -735 7864 41 6 15 chr1 258003201 258004756 -24188908 - SVA Other Other -799 1385 1 1409 235 62 176 chr1 258004756 258004791 -24188873 + L2 LINE L2 2578 2615 -698 332 222 0 71 chr1 258004791 258004890 -24188774 - L1MB7 LINE L1 -114 6064 5973 1409 235 62 176 chr1 258004890 258005342 -24188322 + L2 LINE L2 2615 3003 -310 1993 143 3 3 chr1 258005373 258005680 -24187984 - AluJb SINE Alu -5 307 1 26 0 0 0 chr1 258005753 258005779 -24187885 + AT_rich Low_complexity Low_complexity 1 26 0 1898 147 10 7 chr1 258005782 258006081 -24187583 - L1PB4 LINE L1 -1 6155 5856 198 194 0 129 chr1 258006218 258006280 -24187384 - MER5A DNA MER1_type 0 189 136 1024 177 4 103 chr1 258006292 258006535 -24187129 + AluJo SINE Alu 1 219 -93 233 286 0 0 chr1 258006581 258006630 -24187034 + MER5A DNA MER1_type 69 117 -72 2116 72 58 17 chr1 258006980 258007271 -24186393 - AluSq SINE Alu -10 303 1 208 304 38 38 chr1 258007278 258007357 -24186307 + L2 LINE L2 3186 3264 -8 335 167 0 15 chr1 258008552 258008618 -24185046 - Alu SINE Alu 0 302 238 2482 121 27 16 chr1 258008908 258009279 -24184385 + THE1C LTR MaLR 1 375 0 296 303 67 13 chr1 258010022 258010171 -24183493 - MER5A DNA MER1_type -16 162 5 181 0 0 0 chr1 258010401 258010421 -24183243 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 1703 158 44 0 chr1 258010421 258010694 -24182970 - AluSx SINE Alu -27 285 1 1672 158 4 22 chr1 258010717 258010995 -24182669 + AluJo SINE Alu 34 306 -6 24 53 0 0 chr1 258011009 258011047 -24182617 + AT_rich Low_complexity Low_complexity 1 38 0 2183 203 6 3 chr1 258011069 258011433 -24182231 - MLT1A1 LTR MaLR 0 365 1 2347 98 0 0 chr1 258011460 258011756 -24181908 + AluSx SINE Alu 1 296 -16 232 190 0 52 chr1 258011774 258011832 -24181832 - L1ME LINE L1 -355 5766 5712 21 57 0 0 chr1 258011832 258011867 -24181797 + AT_rich Low_complexity Low_complexity 1 35 0 2469 169 56 12 chr1 258011881 258012289 -24181375 - MSTB LTR MaLR 0 426 1 251 133 0 67 chr1 258012474 258012519 -24181145 - HERVL LTR ERVL -2098 3556 3515 272 114 0 0 chr1 258012530 258012574 -24181090 - MLT2B2 LTR ERVL -470 45 2 775 222 58 129 chr1 258012789 258013100 -24180564 + MER21B LTR ERV1 22 310 -553 230 286 0 0 chr1 258013067 258013116 -24180548 + MER77 LTR ERV1 277 325 -280 * 2279 125 0 0 chr1 258013166 258013470 -24180194 + AluSx SINE Alu 1 304 -8 868 259 61 50 chr1 258013495 258013838 -24179826 - L2 LINE L2 -612 2702 2356 2122 119 3 19 chr1 258013841 258014153 -24179511 - AluSx SINE Alu -5 307 1 1321 240 161 48 chr1 258014226 258015100 -24178564 - L2 LINE L2 0 3313 2340 638 153 0 0 chr1 258015130 258015228 -24178436 + FLAM_A SINE Alu 4 101 -41 414 292 31 12 chr1 258015228 258015249 -24178415 - L1MA10 LINE L1 -2 6332 6312 921 217 32 64 chr1 258015249 258015498 -24178166 - L1ME2 LINE L1 -14 6150 5910 2287 95 14 0 chr1 258015559 258015855 -24177809 - AluSg SINE Alu -10 300 1 1566 155 48 52 chr1 258015907 258016198 -24177466 - AluJo SINE Alu -22 290 1 2074 142 10 6 chr1 258016376 258016687 -24176977 + AluSx SINE Alu 1 312 0 1836 149 24 7 chr1 258016845 258017134 -24176530 - AluJb SINE Alu -18 294 1 1459 178 11 8 chr1 258017611 258017875 -24175789 + AluJo SINE Alu 17 281 -31 1802 183 151 35 chr1 258017909 258018400 -24175264 - LTR10A LTR ERV1 -61 548 1 569 146 0 0 chr1 258018696 258018792 -24174872 - L1MA5 LINE L1 -5 6295 6200 245 164 0 18 chr1 258018831 258018886 -24174778 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 31 58 0 0 chr1 258020245 258020297 -24173367 + AT_rich Low_complexity Low_complexity 1 52 0 189 0 0 0 chr1 258020302 258020323 -24173341 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2474 64 0 0 chr1 258020395 258020692 -24172972 + AluY SINE Alu 1 297 -14 492 65 90 7 chr1 258020844 258020999 -24172665 + (TA)n Simple_repeat Simple_repeat 1 168 0 1333 98 10 10 chr1 258021106 258021300 -24172364 + AluSp SINE Alu 115 308 -5 21 0 0 0 chr1 258021969 258021990 -24171674 + AT_rich Low_complexity Low_complexity 1 21 0 1753 166 30 3 chr1 258022168 258022470 -24171194 - AluJb SINE Alu -2 310 1 788 310 13 9 chr1 258022491 258022723 -24170941 + MIR SINE MIR 2 234 -28 937 254 55 29 chr1 258022934 258023091 -24170573 - MLT1E LTR MaLR 0 593 442 5284 148 45 24 chr1 258023091 258023502 -24170162 - MER4D LTR ERV1 0 903 502 2245 138 0 0 chr1 258023502 258023807 -24169857 - AluSx SINE Alu -7 305 1 5284 148 45 24 chr1 258023807 258023962 -24169702 - MER4D LTR ERV1 -401 502 352 2191 115 3 7 chr1 258023962 258024257 -24169407 + AluSg SINE Alu 1 294 -16 5284 148 45 24 chr1 258024257 258024573 -24169091 - MER4D LTR ERV1 -551 352 1 937 254 55 29 chr1 258024573 258024687 -24168977 - MLT1E LTR MaLR -151 442 315 387 265 25 16 chr1 258024785 258024918 -24168746 + MER77 LTR ERV1 26 197 -408 * 1343 268 54 64 chr1 258024893 258025505 -24168159 + MER21B LTR ERV1 100 705 -158 684 268 2 14 chr1 258025518 258025693 -24167971 - MLT1E LTR MaLR -380 215 1 484 314 22 38 chr1 258025756 258025941 -24167723 - MIR3 SINE MIR -2 206 25 839 182 0 15 chr1 258026178 258026310 -24167354 - FLAM_C SINE Alu -11 132 3 2276 84 0 3 chr1 258027163 258027468 -24166196 - AluSx SINE Alu 0 304 1 222 251 126 141 chr1 258028184 258028292 -24165372 + MIR SINE MIR 6 114 -148 2418 111 103 23 chr1 258028292 258028623 -24165041 + MSTA LTR MaLR 1 371 -57 2105 122 34 0 chr1 258028623 258028798 -24164866 - AluSg SINE Alu -4 306 115 243 0 0 0 chr1 258028798 258028825 -24164839 + (TG)n Simple_repeat Simple_repeat 2 28 0 2105 122 34 0 chr1 258028825 258028945 -24164719 - AluSg SINE Alu -195 115 1 2418 111 103 23 chr1 258028945 258029009 -24164655 + MSTA LTR MaLR 371 428 0 222 251 126 141 chr1 258029009 258029155 -24164509 + MIR SINE MIR 114 256 -6 328 255 92 35 chr1 258029392 258029533 -24164131 + L2 LINE L2 3123 3271 -1 292 261 42 70 chr1 258030216 258030358 -24163306 - MIR SINE MIR -78 184 47 469 293 48 7 chr1 258031521 258031668 -24161996 - MIR SINE MIR -64 198 46 3612 170 28 66 chr1 258031675 258031989 -24161675 - LTR39 LTR ERV1 -1 782 457 2110 141 0 0 chr1 258031989 258032288 -24161376 + AluSx SINE Alu 1 299 -13 3612 170 28 66 chr1 258032288 258032590 -24161074 - LTR39 LTR ERV1 -326 457 198 1012 34 17 0 chr1 258032590 258032709 -24160955 - L1PA4 LINE L1 -1 6154 6034 3612 170 28 66 chr1 258032709 258032844 -24160820 - LTR39 LTR ERV1 -585 198 59 522 278 128 32 chr1 258033344 258033625 -24160039 - L2 LINE L2 -11 3302 2995 2188 91 0 21 chr1 258033865 258034176 -24159488 + AluSg SINE Alu 1 305 0 242 366 0 11 chr1 258034180 258034273 -24159391 + LTR33 LTR ERVL 66 157 -364 471 227 125 0 chr1 258034368 258034496 -24159168 + LTR33 LTR ERVL 378 521 0 689 255 30 69 chr1 258034789 258035020 -24158644 + MIR SINE MIR 28 249 -13 2198 118 7 3 chr1 258035949 258036255 -24157409 - AluSx SINE Alu -5 307 1 209 256 100 56 chr1 258036315 258036405 -24157259 + L2 LINE L2 2217 2310 -1004 292 251 98 24 chr1 258036508 258036613 -24157051 + MIR SINE MIR 45 156 -72 1962 107 104 14 chr1 258036621 258036990 -24156674 - LTR7 LTR ERV1 0 450 1 3990 185 37 32 chr1 258037000 258037337 -24156327 + L1 LINE L1 4341 4675 -1471 216 0 0 0 chr1 258037337 258037361 -24156303 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3990 185 37 32 chr1 258037361 258037838 -24155826 + L1 LINE L1 4675 5162 -984 777 191 8 8 chr1 258037838 258037969 -24155695 + FLAM_C SINE Alu 1 131 -2 3990 185 37 32 chr1 258037969 258038045 -24155619 + L1 LINE L1 5162 5236 -910 2508 249 0 67 chr1 258038612 258039149 -24154515 - L1PA4 LINE L1 -3 6152 5652 5163 54 20 1 chr1 258039149 258040057 -24153607 + L1PA4 LINE L1 4716 5635 -519 182 217 267 0 chr1 258040229 258040289 -24153375 + L2 LINE L2 3238 3313 0 2139 124 7 0 chr1 258040520 258040826 -24152838 - AluSx SINE Alu -4 308 1 512 325 91 4 chr1 258041980 258042211 -24151453 + MIR SINE MIR 2 252 -10 228 299 89 33 chr1 258042423 258042637 -24151027 - L1M4 LINE L1 -3251 2895 2670 1474 157 181 17 chr1 258042717 258043016 -24150648 + MER7A DNA MER2_type 1 346 0 766 179 37 19 chr1 258043454 258043616 -24150048 - Charlie1b DNA MER1_type 0 523 359 2003 96 3 66 chr1 258043622 258043945 -24149719 + AluSq SINE Alu 1 304 0 489 290 138 9 chr1 258043962 258044193 -24149471 - Charlie1b DNA MER1_type -259 264 4 2019 121 143 0 chr1 258045515 258045830 -24147834 - MER46B DNA MER2_type -1 235 1 622 306 70 48 chr1 258046027 258046510 -24147154 + HAL1b LINE L1 89 582 -766 295 268 58 0 chr1 258047032 258047170 -24146494 + L1M4 LINE L1 2183 2328 -3818 1023 131 0 0 chr1 258047911 258048414 -24145250 + (CATTC)n Satellite Satellite 1 503 0 876 137 3 6 chr1 258048455 258048820 -24144844 + (CATTC)n Satellite Satellite 1 363 0 1065 140 1 13 chr1 258048854 258050013 -24143651 + (CATTC)n Satellite Satellite 1 1144 0 863 130 0 22 chr1 258050045 258050229 -24143435 + (CATTC)n Satellite Satellite 1 180 0 1392 121 3 2 chr1 258050249 258051721 -24141943 + (CATTC)n Satellite Satellite 1 1473 0 990 118 0 0 chr1 258051733 258051903 -24141761 + (CATTC)n Satellite Satellite 2 171 0 1098 134 0 0 chr1 258051936 258052433 -24141231 + (CATTC)n Satellite Satellite 1 497 0 1183 87 7 23 chr1 258052477 258052773 -24140891 + (CATTC)n Satellite Satellite 4 292 0 602 155 43 0 chr1 258052780 258052896 -24140768 + MER67C LTR ERV1 590 710 0 345 187 0 0 chr1 258053091 258053166 -24140498 + CT-rich Low_complexity Low_complexity 2 76 0 2029 122 4 4 chr1 258053167 258053446 -24140218 - AluSp SINE Alu -34 279 1 209 256 100 56 chr1 258053506 258053596 -24140068 + L2 LINE L2 2217 2310 -1004 292 251 98 24 chr1 258053699 258053804 -24139860 + MIR SINE MIR 45 156 -72 1962 107 104 14 chr1 258053812 258054181 -24139483 - LTR7 LTR ERV1 0 450 1 3990 185 37 32 chr1 258054191 258054528 -24139136 + L1 LINE L1 4341 4675 -1471 216 0 0 0 chr1 258054528 258054552 -24139112 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 3990 185 37 32 chr1 258054552 258055029 -24138635 + L1 LINE L1 4675 5162 -984 777 191 8 8 chr1 258055029 258055160 -24138504 + FLAM_C SINE Alu 1 131 -2 3990 185 37 32 chr1 258055160 258055236 -24138428 + L1 LINE L1 5162 5236 -910 2117 38 0 0 chr1 258055803 258056043 -24137621 - L1PA4 LINE L1 -3 6152 5913 3428 214 192 16 chr1 258056168 258057196 -24136468 - L1MC4 LINE L1 -142 7900 6692 229 284 12 12 chr1 258057325 258057406 -24136258 - L1M2c LINE L1 -4850 1939 1859 32 43 0 0 chr1 258057425 258057471 -24136193 + AT_rich Low_complexity Low_complexity 1 46 0 189 0 0 0 chr1 258057950 258057971 -24135693 + (TATG)n Simple_repeat Simple_repeat 2 22 0 2274 103 3 0 chr1 258058382 258058682 -24134982 - AluSp SINE Alu -12 301 1 3120 74 2 13 chr1 258059251 258059644 -24134020 + L1PA6 LINE L1 5754 6142 -12 196 241 98 98 chr1 258061586 258061719 -24131945 - MIR SINE MIR -79 183 51 1022 167 43 0 chr1 258062973 258063020 -24130644 + MER3 DNA MER1_type 4 58 -151 323 219 100 44 chr1 258063020 258063180 -24130484 - MER3 DNA MER1_type -3 206 38 781 159 16 0 chr1 258063671 258063797 -24129867 - FRAM SINE Alu -20 156 29 793 249 154 21 chr1 258066508 258066885 -24126779 + L1ME3 LINE L1 5646 6072 -90 1203 195 94 3 chr1 258067392 258067679 -24125985 - MER33 DNA MER1_type 0 324 12 409 200 60 20 chr1 258067715 258067815 -24125849 + MER5A DNA MER1_type 4 107 -82 867 205 79 0 chr1 258068004 258068194 -24125470 + MER3 DNA MER1_type 4 208 -1 603 120 0 0 chr1 258069646 258069738 -24123926 - FRAM SINE Alu -16 160 69 381 22 0 0 chr1 258069854 258069900 -24123764 - MER11C LTR ERVK -1022 49 4 2816 227 79 41 chr1 258069919 258070203 -24123461 - MER21B LTR ERV1 -58 805 533 1717 173 0 16 chr1 258070203 258070509 -24123155 - AluJo SINE Alu -11 301 1 2816 227 79 41 chr1 258070509 258070819 -24122845 - MER21B LTR ERV1 -330 533 173 1998 153 0 3 chr1 258070819 258071113 -24122551 + AluSq SINE Alu 1 293 -20 2816 227 79 41 chr1 258071113 258071275 -24122389 - MER21B LTR ERV1 -690 173 19 280 320 0 0 chr1 258071297 258071372 -24122292 - MER21B LTR ERV1 -773 90 16 1581 212 0 7 chr1 258071372 258071669 -24121995 - AluJo SINE Alu -13 299 5 1507 194 14 57 chr1 258071672 258072023 -24121641 + MLT1D LTR MaLR 162 497 -8 1585 196 10 14 chr1 258072050 258072177 -24121487 + AluJb SINE Alu 10 136 -176 2138 107 35 0 chr1 258072177 258072466 -24121198 + AluSg1 SINE Alu 1 299 -10 1585 196 10 14 chr1 258072466 258072629 -24121035 + AluJb SINE Alu 136 299 -13 1269 259 80 32 chr1 258072629 258073238 -24120426 - L2 LINE L2 -216 3097 2458 695 218 0 0 chr1 258073337 258073470 -24120194 + FLAM_C SINE Alu 1 133 0 27 0 0 0 chr1 258073470 258073497 -24120167 + AT_rich Low_complexity Low_complexity 1 27 0 1265 247 10 7 chr1 258073497 258073793 -24119871 + AluJo SINE Alu 2 298 -4 342 245 11 11 chr1 258073938 258074032 -24119632 + LTR37A LTR ERV1 240 333 -93 2131 142 0 3 chr1 258074243 258074552 -24119112 - AluSq SINE Alu -5 308 1 1605 189 20 20 chr1 258074854 258075156 -24118508 - AluJo SINE Alu -10 302 1 2740 197 39 35 chr1 258075177 258075797 -24117867 - L1MB8 LINE L1 -5 6173 5552 684 180 0 0 chr1 258075797 258075908 -24117756 + FLAM_A SINE Alu 4 114 -19 492 164 8 102 chr1 258075942 258076030 -24117634 - L1ME LINE L1 -577 5589 5505 1643 187 10 7 chr1 258076030 258076324 -24117340 - AluJb SINE Alu -17 295 1 492 164 8 102 chr1 258076324 258076355 -24117309 - L1ME LINE L1 -661 5505 5473 580 207 0 122 chr1 258076413 258076473 -24117191 + AluJo SINE Alu 24 90 -222 285 89 0 0 chr1 258076473 258076518 -24117146 + (TTG)n Simple_repeat Simple_repeat 1 45 0 1922 135 22 4 chr1 258076518 258076792 -24116872 - AluSx SINE Alu -33 279 1 580 207 0 122 chr1 258076792 258076894 -24116770 + AluJo SINE Alu 88 167 -145 1363 166 123 32 chr1 258076906 258077183 -24116481 - AluJo SINE Alu 0 302 1 1353 238 3 17 chr1 258077436 258077730 -24115934 - AluJo SINE Alu -18 294 5 377 189 25 132 chr1 258077731 258077890 -24115774 - MLT1D LTR MaLR -292 213 72 189 261 72 14 chr1 258077959 258078028 -24115636 - L2 LINE L2 -32 3281 3209 183 310 57 70 chr1 258078074 258078303 -24115361 - L2 LINE L2 -211 3061 2836 1643 188 0 16 chr1 258078664 258078972 -24114692 - AluJb SINE Alu -9 303 1 2368 96 3 0 chr1 258079058 258079361 -24114303 - AluSp SINE Alu -9 304 1 236 207 0 73 chr1 258079363 258079387 -24114277 + LTR41 LTR ERVL 697 721 -52 186 43 0 0 chr1 258079387 258079410 -24114254 + (TA)n Simple_repeat Simple_repeat 2 24 0 1880 155 0 3 chr1 258079411 258079702 -24113962 - AluJb SINE Alu -18 294 5 236 207 0 73 chr1 258079702 258079757 -24113907 + LTR41 LTR ERVL 720 772 -1 2988 125 9 2 chr1 258080062 258080494 -24113170 + MER1A DNA MER1_type 56 490 -39 704 197 0 0 chr1 258080507 258080624 -24113040 - FLAM_C SINE Alu -18 125 9 665 139 28 0 chr1 258080665 258080773 -24112891 + AluJb SINE Alu 194 304 -8 237 357 36 9 chr1 258081445 258081557 -24112107 - MIR SINE MIR -75 187 73 2585 241 47 37 chr1 258081720 258081965 -24111699 - MER21B LTR ERV1 -112 751 510 1604 214 0 3 chr1 258081965 258082269 -24111395 - AluJo SINE Alu -9 303 1 2585 241 47 37 chr1 258082269 258082339 -24111325 - MER21B LTR ERV1 -353 510 442 1354 194 48 51 chr1 258082339 258082633 -24111031 + AluJb SINE Alu 2 294 -18 2585 241 47 37 chr1 258082633 258083042 -24110622 - MER21B LTR ERV1 -421 442 19 353 254 0 0 chr1 258083068 258083139 -24110525 - MER21B LTR ERV1 -777 86 16 1053 217 43 5 chr1 258083139 258083346 -24110318 - AluJb SINE Alu -13 299 85 412 183 0 0 chr1 258083357 258083428 -24110236 - FLAM SINE Alu -28 115 45 694 217 0 0 chr1 258083428 258083548 -24110116 - FLAM_A SINE Alu -13 120 1 641 228 0 7 chr1 258083553 258083689 -24109975 - FLAM_C SINE Alu -7 136 2 1554 166 25 57 chr1 258083689 258084003 -24109661 + MLT1D LTR MaLR 162 465 -40 1578 194 23 13 chr1 258084148 258084282 -24109382 + AluJo SINE Alu 1 132 -180 2240 103 0 10 chr1 258084282 258084594 -24109070 + AluSq SINE Alu 1 313 0 1578 194 23 13 chr1 258084594 258084768 -24108896 + AluJo SINE Alu 132 312 0 1091 232 93 76 chr1 258084769 258085410 -24108254 - L2 LINE L2 -213 3100 2458 533 250 0 0 chr1 258085516 258085632 -24108032 + FLAM_C SINE Alu 9 124 -19 1352 218 10 10 chr1 258085656 258085954 -24107710 + AluJo SINE Alu 1 298 -14 2056 129 3 7 chr1 258086112 258086406 -24107258 + AluSq SINE Alu 5 297 -16 276 222 169 21 chr1 258086449 258086638 -24107026 + Charlie1 DNA MER1_type 2539 2755 -6 1319 209 8 4 chr1 258086692 258086960 -24106704 - AluJo SINE Alu -4 308 40 774 238 0 6 chr1 258087579 258087747 -24105917 - AluJb SINE Alu -29 283 117 1126 120 0 6 chr1 258087912 258088070 -24105594 + AluSc SINE Alu 136 292 -17 1134 146 60 121 chr1 258088110 258088425 -24105239 + AluJb SINE Alu 2 297 -5 385 183 101 38 chr1 258088511 258088627 -24105037 + AluJ/FLAM SINE Alu 2 89 -213 1230 141 5 34 chr1 258088629 258088835 -24104829 - AluJb SINE Alu -112 200 1 528 211 0 9 chr1 258088894 258089003 -24104661 - AluSg/x SINE Alu -23 286 179 2148 88 3 20 chr1 258089056 258089351 -24104313 - AluSg SINE Alu -20 290 1 488 182 0 20 chr1 258090335 258090434 -24103230 + FRAM SINE Alu 63 159 -17 980 65 29 29 chr1 258090494 258090632 -24103032 + AluJo SINE Alu 23 160 -152 591 170 7 92 chr1 258090639 258090780 -24102884 - FLAM_C SINE Alu 0 133 5 1984 110 11 0 chr1 258090820 258091093 -24102571 + AluSx SINE Alu 2 277 -35 900 233 10 5 chr1 258091095 258091301 -24102363 + AluJo SINE Alu 76 282 -30 1936 134 0 17 chr1 258092054 258092344 -24101320 - AluSq SINE Alu -8 305 21 1979 127 0 44 chr1 258092554 258092869 -24100795 + AluSx SINE Alu 1 301 -11 2227 102 0 3 chr1 258092871 258093183 -24100481 + AluSq SINE Alu 1 311 0 308 275 119 0 chr1 258093288 258093397 -24100267 + L2 LINE L2 3192 3313 0 23 33 0 0 chr1 258093512 258093542 -24100122 + AT_rich Low_complexity Low_complexity 1 30 0 1743 144 3 45 chr1 258093556 258093770 -24099894 + AluSx SINE Alu 1 201 -111 2293 107 0 7 chr1 258093770 258094079 -24099585 + AluSg1 SINE Alu 1 307 -2 1743 144 3 45 chr1 258094079 258094155 -24099509 + AluSx SINE Alu 201 279 -33 1925 168 36 31 chr1 258094155 258094512 -24099152 - THE1B LTR MaLR -3 361 3 401 242 102 55 chr1 258094660 258094711 -24098953 + MER94 DNA DNA 1 48 -86 2608 188 66 9 chr1 258094711 258095238 -24098426 + MER89 LTR ERV1 3 559 0 401 242 102 55 chr1 258095238 258095314 -24098350 + MER94 DNA DNA 48 134 0 2253 124 3 0 chr1 258095713 258096020 -24097644 + AluSg SINE Alu 1 308 -2 943 198 42 0 chr1 258096057 258096224 -24097440 - MER45A DNA AcHobo -3 175 2 2196 126 3 0 chr1 258096317 258096618 -24097046 - AluSq SINE Alu -11 302 1 252 175 53 0 chr1 258096823 258096880 -24096784 + L2 LINE L2 3251 3310 -3 585 172 0 0 chr1 258096883 258096970 -24096694 - MSTD LTR MaLR -87 309 223 1751 126 91 30 chr1 258096981 258097011 -24096653 + L1MB3 LINE L1 5798 5825 -358 2298 121 0 3 chr1 258097011 258097324 -24096340 + AluSx SINE Alu 1 312 0 1751 126 91 30 chr1 258097324 258097657 -24096007 + L1MB3 LINE L1 5825 6183 0 1202 65 0 0 chr1 258097752 258097890 -24095774 - AluSq/x SINE Alu -175 138 1 1517 250 121 99 chr1 258099435 258099693 -24093971 + L2 LINE L2 2003 2254 -1059 1600 157 49 36 chr1 258099693 258099881 -24093783 - AluJb SINE Alu -3 309 114 180 0 0 0 chr1 258099881 258099901 -24093763 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1600 157 49 36 chr1 258099901 258100017 -24093647 - AluJb SINE Alu -198 114 1 1517 250 121 99 chr1 258100017 258100469 -24093195 + L2 LINE L2 2254 2694 -619 1757 90 5 0 chr1 258100469 258100691 -24092973 - AluSx SINE Alu -77 235 13 1517 250 121 99 chr1 258100691 258100716 -24092948 + L2 LINE L2 2694 2717 -596 1237 40 13 0 chr1 258100716 258100866 -24092798 + L1PA7 LINE L1 6001 6152 -2 1517 250 121 99 chr1 258100866 258101135 -24092529 + L2 LINE L2 2717 3019 -294 182 250 83 14 chr1 258101137 258101209 -24092455 + L2 LINE L2 1898 1974 -1340 1258 112 20 5 chr1 258101260 258101456 -24092208 - Tigger4(Zombi) DNA MER2_type -5 2726 2528 22 0 0 0 chr1 258101465 258101487 -24092177 + AT_rich Low_complexity Low_complexity 1 22 0 1872 168 0 0 chr1 258101487 258101779 -24091885 - AluJo SINE Alu -18 294 3 1389 177 102 8 chr1 258101792 258102058 -24091606 - AluJo SINE Alu -21 291 1 668 245 43 0 chr1 258102063 258102202 -24091462 - MER119 DNA MER1_type -414 169 25 2002 157 0 7 chr1 258102853 258103152 -24090512 + AluJb SINE Alu 1 297 -15 2300 100 3 0 chr1 258103199 258103490 -24090174 - AluSq SINE Alu -21 292 1 681 199 7 7 chr1 258103515 258103651 -24090013 - FLAM_C SINE Alu -6 137 2 2408 87 0 3 chr1 258103665 258103963 -24089701 - AluSx SINE Alu -15 297 1 631 168 19 0 chr1 258103968 258104075 -24089589 - MLT1B LTR MaLR -277 113 5 1613 130 25 105 chr1 258104080 258104217 -24089447 - MLT1B-int LTR MaLR -1 1370 1224 1656 158 40 24 chr1 258104217 258104515 -24089149 + AluJo SINE Alu 1 303 -9 1613 130 25 105 chr1 258104515 258104632 -24089032 - MLT1B-int LTR MaLR -147 1224 1149 1808 181 32 18 chr1 258104632 258104975 -24088689 + MER7A DNA MER2_type 1 346 0 1613 130 25 105 chr1 258104975 258105072 -24088592 - MLT1B-int LTR MaLR -222 1149 1046 3753 204 57 73 chr1 258105189 258106124 -24087540 - MLT1B-int LTR MaLR -297 1074 158 2064 123 3 3 chr1 258106124 258106417 -24087247 - AluSx SINE Alu -18 294 2 3753 204 57 73 chr1 258106417 258106573 -24087091 - MLT1B-int LTR MaLR -1213 158 1 1662 151 26 46 chr1 258106705 258107009 -24086655 + AluJo SINE Alu 1 298 -14 1795 133 0 115 chr1 258107317 258107655 -24086009 - AluSx SINE Alu -3 299 1 410 275 0 0 chr1 258107707 258107798 -24085866 + MER58 DNA MER1_type 1 91 -2329 1791 145 28 3 chr1 258107830 258108120 -24085544 - AluJb SINE Alu -15 297 1 924 216 25 15 chr1 258108218 258108422 -24085242 + AluJo SINE Alu 82 287 -25 2158 128 0 0 chr1 258108429 258108719 -24084945 - AluSx SINE Alu -16 296 7 1444 212 54 39 chr1 258108788 258109198 -24084466 - L1MC4 LINE L1 -180 7862 7447 374 175 175 0 chr1 258109261 258109375 -24084289 - L1MC4 LINE L1 -705 7337 7204 * 807 227 66 14 chr1 258109369 258109587 -24084077 + L1MC4 LINE L1 7463 7678 -364 1601 88 0 0 chr1 258109587 258109791 -24083873 + AluY SINE Alu 105 308 -3 345 171 63 27 chr1 258109976 258110087 -24083577 + L1MC4 LINE L1 7690 7804 -238 1324 95 0 0 chr1 258110094 258110263 -24083401 - AluSc SINE Alu -7 302 134 2300 86 0 20 chr1 258110265 258110569 -24083095 - AluY SINE Alu -13 298 1 1868 165 7 7 chr1 258110647 258110950 -24082714 - AluJb SINE Alu -9 303 1 285 214 101 83 chr1 258110953 258111121 -24082543 + L1MC4 LINE L1 7872 8042 0 195 343 0 15 chr1 258111596 258111663 -24082001 + L2 LINE L2 2693 2758 -556 310 383 93 6 chr1 258111698 258111860 -24081804 + L2 LINE L2 2871 3046 -226 2249 106 3 3 chr1 258112111 258112414 -24081250 - AluSx SINE Alu -9 303 1 1446 299 18 13 chr1 258112468 258112920 -24080744 - L1PA12 LINE L1 -5937 1644 1191 1261 92 0 6 chr1 258113103 258113266 -24080398 - AluSg/x SINE Alu -23 287 126 691 265 82 65 chr1 258113282 258113743 -24079921 - L1M4 LINE L1 -2382 3764 3296 598 262 102 22 chr1 258113734 258114092 -24079572 - L1MC4a LINE L1 -322 5799 5444 * 2270 98 0 0 chr1 258114104 258114400 -24079264 - AluSx SINE Alu -16 296 1 234 260 89 35 chr1 258114442 258114700 -24078964 - L1MC4a LINE L1 -766 5380 5109 1305 163 5 9 chr1 258114940 258115161 -24078503 - AluJb SINE Alu -8 304 85 28 0 0 0 chr1 258115224 258115252 -24078412 + AT_rich Low_complexity Low_complexity 1 28 0 2324 97 0 22 chr1 258115264 258115583 -24078081 - AluSx SINE Alu 0 312 1 567 257 153 36 chr1 258115944 258116166 -24077498 - MIR SINE MIR -4 258 11 875 173 0 0 chr1 258116401 258116534 -24077130 + AluJb SINE Alu 1 133 -179 1458 114 0 55 chr1 258116538 258116757 -24076907 + AluJb SINE Alu 87 293 -19 1780 166 0 10 chr1 258116771 258117067 -24076597 + AluJb SINE Alu 12 304 -8 1817 152 0 7 chr1 258117088 258117357 -24076307 + AluJo SINE Alu 1 267 -45 215 167 0 21 chr1 258117367 258117415 -24076249 + GA-rich Low_complexity Low_complexity 2 48 0 1098 183 51 5 chr1 258117721 258117918 -24075746 + MER2 DNA MER2_type 2 207 -138 468 137 0 0 chr1 258117919 258117992 -24075672 - AluJ/FRAM SINE Alu -7 305 233 427 156 0 0 chr1 258118102 258118166 -24075498 - AluSp/q SINE Alu -90 223 160 1877 146 4 4 chr1 258118166 258118446 -24075218 - AluSx SINE Alu -31 281 2 394 221 13 0 chr1 258118507 258118584 -24075080 + MER2 DNA MER2_type 268 345 0 1730 178 0 4 chr1 258118677 258118958 -24074706 - AluJo SINE Alu -32 280 1 2633 46 0 0 chr1 258119111 258119414 -24074250 - AluY SINE Alu -8 303 1 2395 101 0 0 chr1 258119478 258119785 -24073879 - AluSx SINE Alu -5 307 1 653 269 135 24 chr1 258120309 258120472 -24073192 + L2 LINE L2 2526 2670 -644 1734 174 10 0 chr1 258120472 258120766 -24072898 - AluJb SINE Alu -7 305 9 653 269 135 24 chr1 258120766 258120899 -24072765 + L2 LINE L2 2670 2855 -459 1377 158 24 4 chr1 258120900 258121153 -24072511 + Charlie5 DNA MER1_type 2283 2540 -72 1431 173 4 16 chr1 258121347 258121601 -24072063 - AluJb SINE Alu -18 294 44 971 92 0 0 chr1 258121628 258121747 -24071917 + AluY SINE Alu 1 119 -192 1793 77 0 0 chr1 258121848 258122068 -24071596 + AluY SINE Alu 74 293 -18 800 253 37 0 chr1 258122068 258122230 -24071434 - FAM SINE Alu -7 168 1 194 329 0 40 chr1 258122320 258122396 -24071268 - L2 LINE L2 -63 3209 3137 2013 122 52 0 chr1 258122498 258122786 -24070878 + AluSq SINE Alu 1 303 -10 764 100 30 0 chr1 258122861 258122961 -24070703 - U6 snRNA snRNA -4 103 1 2210 96 0 0 chr1 258123880 258124196 -24069468 - AluSc SINE Alu 0 316 1 271 299 131 0 chr1 258124278 258124385 -24069279 - MIR SINE MIR -121 141 21 185 62 0 31 chr1 258124649 258124681 -24068983 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 2070 122 3 3 chr1 258124892 258125188 -24068476 - AluSx SINE Alu -16 296 1 1687 175 18 7 chr1 258125287 258125573 -24068091 - AluJb SINE Alu -23 289 1 2316 86 10 3 chr1 258125841 258126144 -24067520 + AluSp SINE Alu 2 306 -7 1511 165 118 0 chr1 258126512 258126791 -24066873 - AluJb SINE Alu 0 312 1 767 160 30 8 chr1 258126960 258127091 -24066573 + AluJo SINE Alu 2 135 -177 2367 94 0 3 chr1 258127239 258127537 -24066127 - AluSp SINE Alu -16 297 1 395 289 15 22 chr1 258128212 258128347 -24065317 + MIR SINE MIR 125 258 -4 196 225 100 0 chr1 258128839 258128879 -24064785 + L2 LINE L2 3215 3258 -14 284 86 35 35 chr1 258129402 258129460 -24064204 - L1MB4 LINE L1 -1 6179 6122 1131 150 0 0 chr1 258130126 258130293 -24063371 - AluSg/x SINE Alu 0 312 146 2035 127 38 0 chr1 258130303 258130594 -24063070 - AluSx SINE Alu -10 302 1 1058 145 110 15 chr1 258130755 258130955 -24062709 - L1MB3 LINE L1 -40 6143 5925 739 154 52 7 chr1 258131101 258131237 -24062427 + L1MB3 LINE L1 6032 6173 -10 24 67 0 0 chr1 258131866 258131911 -24061753 + AT_rich Low_complexity Low_complexity 1 45 0 906 169 0 0 chr1 258131984 258132114 -24061550 + FLAM_C SINE Alu 3 132 -1 198 71 0 0 chr1 258132203 258132231 -24061433 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 904 192 0 0 chr1 258132231 258132377 -24061287 - AluJo/FRAM SINE Alu -30 282 137 1311 114 86 9 chr1 258132377 258132597 -24061067 - AluSg/x SINE Alu -6 306 70 2327 72 3 30 chr1 258132838 258133143 -24060521 + AluY SINE Alu 1 297 -14 224 329 65 100 chr1 258133403 258133804 -24059860 + L2 LINE L2 2874 3260 -12 1678 153 56 17 chr1 258134240 258134527 -24059137 + AluJo SINE Alu 3 300 -12 2558 54 0 0 chr1 258134969 258135267 -24058397 + AluY SINE Alu 1 298 -13 2106 126 0 27 chr1 258135283 258135584 -24058080 + AluSx SINE Alu 1 293 -19 221 272 148 30 chr1 258135607 258135776 -24057888 - L2 LINE L2 -2363 951 763 213 349 18 9 chr1 258135851 258135960 -24057704 + MIR SINE MIR 58 167 -95 486 133 0 27 chr1 258136087 258136162 -24057502 - FLAM SINE Alu -16 127 55 621 226 21 22 chr1 258136243 258136411 -24057253 - MLT1F LTR MaLR -6 584 390 308 224 0 15 chr1 258136607 258136674 -24056990 + Tigger5 DNA MER2_type 2257 2322 -1 22 0 0 0 chr1 258136902 258136924 -24056740 + AT_rich Low_complexity Low_complexity 1 22 0 1250 61 0 0 chr1 258136979 258137126 -24056538 + AluSp SINE Alu 148 294 -19 2015 136 0 10 chr1 258137279 258137588 -24056076 - AluSx SINE Alu -2 310 5 920 151 0 81 chr1 258137967 258138062 -24055602 + L1M4 LINE L1 5476 5550 -628 998 170 6 6 chr1 258138062 258138221 -24055443 + FRAM SINE Alu 1 159 -7 920 151 0 81 chr1 258138221 258138310 -24055354 + L1M4 LINE L1 5550 5645 -533 26 0 0 0 chr1 258138497 258138523 -24055141 + AT_rich Low_complexity Low_complexity 1 26 0 2145 117 3 3 chr1 258138535 258138834 -24054830 - AluSx SINE Alu -13 299 1 1291 138 6 0 chr1 258139184 258139358 -24054306 + FAM SINE Alu 1 175 0 24 0 0 0 chr1 258139857 258139881 -24053783 + AT_rich Low_complexity Low_complexity 1 24 0 1497 101 5 14 chr1 258139903 258140122 -24053542 - AluY SINE Alu -12 299 83 2034 123 7 0 chr1 258140234 258140518 -24053146 - AluSx SINE Alu -15 297 12 1420 143 84 16 chr1 258140533 258140784 -24052880 - AluJb SINE Alu -9 303 36 2450 76 10 0 chr1 258140793 258141096 -24052568 - AluSx SINE Alu -6 306 1 2231 171 20 119 chr1 258141096 258141315 -24052349 - L1ME LINE L1 -564 5671 5432 2127 106 10 3 chr1 258141315 258141607 -24052057 - AluSp SINE Alu -19 294 1 2231 171 20 119 chr1 258141607 258141679 -24051985 - L1ME LINE L1 -803 5432 5354 2487 87 0 0 chr1 258141679 258141989 -24051675 - AluSg SINE Alu 0 310 1 2231 171 20 119 chr1 258141989 258142205 -24051459 - L1ME LINE L1 -881 5354 5118 869 160 0 0 chr1 258142205 258142330 -24051334 - FLAM_A SINE Alu -8 125 1 2231 171 20 119 chr1 258142330 258142668 -24050996 - L1ME LINE L1 -1117 5118 4776 1559 210 7 20 chr1 258142671 258142994 -24050670 - AluJo SINE Alu 0 312 1 2346 91 3 0 chr1 258143012 258143309 -24050355 - AluSp SINE Alu -15 298 1 828 211 31 44 chr1 258143319 258143502 -24050162 - L1ME LINE L1 -4352 2044 1862 4609 220 70 29 chr1 258143502 258143646 -24050018 - L1MD2 LINE L1 0 6428 6291 2290 112 0 0 chr1 258143646 258143958 -24049706 + AluSq SINE Alu 1 312 -1 4609 220 70 29 chr1 258143958 258144925 -24048739 - L1MD2 LINE L1 -137 6291 5365 1599 174 10 39 chr1 258144925 258145235 -24048429 - AluJo SINE Alu -11 301 1 4609 220 70 29 chr1 258145235 258145324 -24048340 - L1MD2 LINE L1 -1063 5365 5281 207 0 0 0 chr1 258145324 258145347 -24048317 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2125 106 0 0 chr1 258145349 258145624 -24048040 - AluSq SINE Alu -38 275 1 4609 220 70 29 chr1 258145624 258146605 -24047059 - L1MD2 LINE L1 -1147 5281 1820 813 100 0 46 chr1 258146621 258146751 -24046913 + FRAM SINE Alu 49 172 -4 742 203 22 44 chr1 258146876 258146944 -24046720 - L1M4 LINE L1 -2191 3955 3887 1856 182 0 3 chr1 258146944 258147257 -24046407 - AluJb SINE Alu 0 312 1 742 203 22 44 chr1 258147257 258147370 -24046294 - L1M4 LINE L1 -2259 3887 3778 947 201 6 6 chr1 258147376 258147555 -24046109 - AluJo SINE Alu -5 307 129 249 125 0 0 chr1 258147560 258147600 -24046064 - L1M4 LINE L1 -2375 3771 3732 * 903 238 62 46 chr1 258147577 258147884 -24045780 - L1MD2 LINE L1 -4512 1884 1573 2383 98 0 0 chr1 258147887 258148193 -24045471 - AluY SINE Alu -5 306 1 1746 149 20 26 chr1 258148193 258148495 -24045169 - AluJo SINE Alu -12 300 1 669 192 108 0 chr1 258148513 258148633 -24045031 - AluJo SINE Alu -169 133 1 5885 97 16 42 chr1 258148690 258148918 -24044746 - L1MA3 LINE L1 -7 6298 6066 207 0 0 0 chr1 258148918 258148941 -24044723 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1541 134 84 15 chr1 258148942 258149204 -24044460 - AluSx SINE Alu -31 281 2 5885 97 16 42 chr1 258149204 258149462 -24044202 - L1MA3 LINE L1 -239 6066 5803 2261 99 0 7 chr1 258149462 258149765 -24043899 - AluSg1 SINE Alu -8 301 1 5885 97 16 42 chr1 258149765 258150161 -24043503 - L1MA3 LINE L1 -502 5803 5436 3790 83 2 10 chr1 258150175 258150671 -24042993 + L1PB1 LINE L1 5660 6151 0 11645 161 46 45 chr1 258150987 258151273 -24042391 + L1M1 LINE L1 3331 3615 -3950 204 40 0 0 chr1 258151273 258151298 -24042366 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 11645 161 46 45 chr1 258151298 258151958 -24041706 + L1M1 LINE L1 3615 4273 -3292 2267 110 3 0 chr1 258151958 258152257 -24041407 + AluSp SINE Alu 1 300 -13 11645 161 46 45 chr1 258152257 258152624 -24041040 + L1M1 LINE L1 4273 4638 -2927 2353 52 3 56 chr1 258152624 258152948 -24040716 + AluY SINE Alu 3 309 -2 2086 89 11 0 chr1 258152953 258153262 -24040402 + AluY SINE Alu 1 312 0 11645 161 46 45 chr1 258153262 258154397 -24039267 + L1M1 LINE L1 4641 5831 -1734 334 118 20 0 chr1 258154397 258154448 -24039216 + MER75 DNA T2_type 463 514 0 11645 161 46 45 chr1 258154448 258154743 -24038921 + L1M1 LINE L1 5831 6124 -1441 479 101 0 0 chr1 258154741 258154810 -24038854 - L1PBa LINE L1 -3957 2906 2838 * 1003 131 5 113 chr1 258154807 258155028 -24038636 - L1PBa LINE L1 -6042 821 625 * 1167 152 5 0 chr1 258155020 258155217 -24038447 - L1PBa LINE L1 -6663 200 3 190 298 0 18 chr1 258155234 258155291 -24038373 + MER5A DNA MER1_type 130 185 -4 21025 124 31 11 chr1 258155337 258156587 -24037077 - L1M1 LINE L1 -4221 3344 2120 2269 122 57 28 chr1 258156587 258156941 -24036723 - THE1B LTR MaLR 0 364 1 12403 85 11 12 chr1 258156941 258157020 -24036644 - THE1B-int LTR MaLR 0 1580 1502 2489 78 3 3 chr1 258157020 258157328 -24036336 - AluSp SINE Alu -4 309 2 12403 85 11 12 chr1 258157328 258158830 -24034834 - THE1B-int LTR MaLR -78 1502 1 2301 132 48 25 chr1 258158830 258159186 -24034478 - THE1B LTR MaLR 0 364 1 21025 124 31 11 chr1 258159186 258161073 -24032591 - L1M1 LINE L1 -5444 2121 143 1082 178 0 0 chr1 258161073 258161242 -24032422 + AluSg/x SINE Alu 131 299 -13 839 116 22 22 chr1 258161242 258161266 -24032398 - L1M1 LINE L1 -7412 153 130 2096 114 0 29 chr1 258161266 258161573 -24032091 - AluSx SINE Alu -14 298 1 839 116 22 22 chr1 258161573 258161686 -24031978 - L1M1 LINE L1 -7434 131 16 1944 203 123 52 chr1 258161724 258161764 -24031900 - L1MEc LINE L1 -4916 1480 1444 2390 94 0 0 chr1 258161764 258162062 -24031602 + AluSq SINE Alu 1 298 -15 2103 70 0 0 chr1 258162062 258162318 -24031346 + AluY SINE Alu 39 294 -17 1944 203 123 52 chr1 258162318 258163007 -24030657 - L1MEc LINE L1 -4951 1445 698 1322 196 105 4 chr1 258163375 258163641 -24030023 - AluJo SINE Alu -19 293 1 1877 150 0 23 chr1 258163971 258164277 -24029387 - AluJo SINE Alu -2 310 12 245 268 0 0 chr1 258164415 258164471 -24029193 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 495 289 77 16 chr1 258164549 258164743 -24028921 + MIR SINE MIR 56 261 -1 235 184 0 0 chr1 258165888 258165926 -24027738 + L2 LINE L2 3223 3260 -12 2676 238 25 79 chr1 258166072 258166357 -24027307 - L1ME LINE L1 -4939 1141 842 1633 185 0 25 chr1 258166357 258166643 -24027021 - AluJo SINE Alu -33 279 1 2676 238 25 79 chr1 258166643 258167561 -24026103 - L1ME LINE L1 -5238 842 8 1562 168 143 9 chr1 258167562 258167884 -24025780 - MLT1A1 LTR MaLR 0 365 1 3261 81 9 0 chr1 258168608 258169038 -24024626 - MER57B LTR ERV1 0 434 1 1199 177 4 0 chr1 258169220 258169452 -24024212 - MER63B DNA MER1_type -1 435 203 2080 116 0 7 chr1 258169458 258169783 -24023881 - AluSx SINE Alu 0 323 1 694 220 0 15 chr1 258169798 258169930 -24023734 - FLAM_C SINE Alu -3 130 1 897 206 62 0 chr1 258169984 258170178 -24023486 - MER63B DNA MER1_type -230 206 1 210 208 0 0 chr1 258172885 258172933 -24020731 + (CA)n Simple_repeat Simple_repeat 2 49 0 418 266 112 80 chr1 258173307 258173593 -24020071 - L2 LINE L2 0 3272 2978 679 186 8 0 chr1 258173686 258173804 -24019860 + FLAM_C SINE Alu 5 123 -20 195 263 88 0 chr1 258174522 258174579 -24019085 - L2 LINE L2 -75 3197 3136 1205 142 21 13 chr1 258174754 258175296 -24018368 + L1MA9 LINE L1 5649 6144 -40 247 253 101 13 chr1 258175382 258175461 -24018203 + MIR SINE MIR 129 214 -48 21 57 0 0 chr1 258177016 258177051 -24016613 + AT_rich Low_complexity Low_complexity 1 35 0 291 322 75 37 chr1 258177341 258177555 -24016109 + L2 LINE L2 2642 2863 -451 958 113 0 0 chr1 258177657 258177790 -24015874 + FLAM_C SINE Alu 1 133 0 1846 161 3 28 chr1 258177870 258178187 -24015477 - AluJo SINE Alu -3 309 1 1425 179 0 4 chr1 258178270 258178504 -24015160 + AluSx SINE Alu 6 238 -74 257 67 0 22 chr1 258178805 258178850 -24014814 + (TCC)n Simple_repeat Simple_repeat 1 44 0 218 246 0 0 chr1 258179197 258179254 -24014410 + (CCG)n Simple_repeat Simple_repeat 2 58 0 28 61 0 0 chr1 258182690 258182739 -24010925 + AT_rich Low_complexity Low_complexity 1 49 0 2315 93 3 0 chr1 258183767 258184067 -24009597 - AluSg SINE Alu -4 306 6 2219 95 7 29 chr1 258184133 258184439 -24009225 - AluSq SINE Alu -14 299 1 23 33 0 0 chr1 258185722 258185752 -24007912 + AT_rich Low_complexity Low_complexity 1 30 0 2269 90 6 26 chr1 258185926 258186237 -24007427 - AluSq SINE Alu -6 307 3 26 50 0 0 chr1 258186347 258186387 -24007277 + AT_rich Low_complexity Low_complexity 1 40 0 2314 101 10 0 chr1 258186896 258187194 -24006470 + AluSq SINE Alu 1 301 -12 299 309 168 35 chr1 258187698 258187983 -24005681 - L3 LINE CR1 -35 1542 1220 296 241 11 35 chr1 258188893 258188980 -24004684 - MIR SINE MIR -7 255 171 405 204 214 0 chr1 258189006 258189104 -24004560 - AluJb SINE Alu -193 119 1 766 280 76 5 chr1 258189112 258189323 -24004341 + L2 LINE L2 2109 2334 -980 1483 181 4 12 chr1 258189331 258189590 -24004074 - AluJo SINE Alu -55 257 1 1877 194 69 15 chr1 258189595 258190074 -24003590 + L1M4 LINE L1 3926 4430 -1716 540 318 189 35 chr1 258190076 258190318 -24003346 + L2 LINE L2 2389 2592 -721 2114 136 7 0 chr1 258190318 258190620 -24003044 - AluSq SINE Alu -9 304 1 540 318 189 35 chr1 258190620 258191029 -24002635 + L2 LINE L2 2592 3149 -164 443 258 30 23 chr1 258191112 258191244 -24002420 - MIR SINE MIR -118 144 12 792 188 0 0 chr1 258191273 258191406 -24002258 - FLAM_C SINE Alu 0 133 1 2070 97 4 18 chr1 258191455 258191733 -24001931 - AluSx SINE Alu -21 291 18 201 343 0 15 chr1 258191886 258191953 -24001711 - MIR SINE MIR -122 86 21 26 64 0 0 chr1 258192055 258192102 -24001562 + AT_rich Low_complexity Low_complexity 1 47 0 1146 53 0 0 chr1 258192156 258192288 -24001376 + AluY SINE Alu 1 132 -179 806 232 130 0 chr1 258192981 258193188 -24000476 + MIR SINE MIR 7 240 -22 248 62 0 0 chr1 258194176 258194208 -23999456 - U2 snRNA snRNA -156 32 1 1393 177 58 34 chr1 258195337 258195631 -23998033 - AluJo SINE Alu -11 301 1 2463 82 3 0 chr1 258196528 258196833 -23996831 + AluY SINE Alu 1 306 -5 353 311 196 42 chr1 258196903 258197294 -23996370 + L2 LINE L2 1684 2013 -1301 2324 87 3 10 chr1 258197294 258197604 -23996060 + AluSc SINE Alu 1 308 -1 353 311 196 42 chr1 258197604 258197899 -23995765 + L2 LINE L2 2013 2476 -838 744 211 50 135 chr1 258198038 258198356 -23995308 - AluJb SINE Alu -11 291 1 2201 103 7 0 chr1 258198648 258198940 -23994724 + AluSq SINE Alu 1 294 -19 2241 108 0 7 chr1 258198942 258199247 -23994417 + AluSx SINE Alu 1 303 -9 499 297 203 0 chr1 258199350 258199552 -23994112 + MIR SINE MIR 20 262 0 1320 131 0 0 chr1 258199959 258200134 -23993530 - AluSx SINE Alu -137 175 1 900 180 50 30 chr1 258200180 258200380 -23993284 - MER3 DNA MER1_type 0 209 6 438 307 33 89 chr1 258200494 258200764 -23992900 - MIR SINE MIR 0 262 8 408 244 106 56 chr1 258200835 258200995 -23992669 - MIR SINE MIR -46 216 49 716 165 16 8 chr1 258201027 258201154 -23992510 - FRAM SINE Alu -16 160 33 885 161 11 46 chr1 258201162 258201336 -23992328 + FRAM SINE Alu 1 160 -16 544 292 97 18 chr1 258201778 258202004 -23991660 - MIR SINE MIR -2 260 17 1846 154 26 10 chr1 258202049 258202354 -23991310 + AluJb SINE Alu 1 310 -2 2509 86 0 0 chr1 258202729 258203042 -23990622 - AluSq SINE Alu 0 313 1 1972 145 3 6 chr1 258203150 258203461 -23990203 - AluSx SINE Alu -2 310 1 1123 160 80 77 chr1 258203572 258203935 -23989729 - Charlie4a DNA MER1_type 0 508 145 421 252 36 7 chr1 258204010 258204149 -23989515 - Charlie4a DNA MER1_type -348 160 18 188 374 101 0 chr1 258204407 258204506 -23989158 - L2 LINE L2 -439 2875 2767 223 294 0 0 chr1 258204602 258204653 -23989011 - L2 LINE L2 -5 3267 3217 2156 121 3 3 chr1 258205232 258205529 -23988135 + AluSx SINE Alu 1 297 -15 186 43 0 0 chr1 258205531 258205554 -23988110 + (TA)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr1 258205868 258205889 -23987775 + (TA)n Simple_repeat Simple_repeat 1 21 0 2422 106 0 0 chr1 258205889 258206201 -23987463 - AluSx SINE Alu 0 312 1 620 207 74 0 chr1 258206842 258206963 -23986701 - FLAM_C SINE Alu -3 130 1 292 293 186 32 chr1 258207307 258207495 -23986169 + MIR SINE MIR 23 239 -23 3159 141 50 7 chr1 258207501 258208105 -23985559 + L1MB7 LINE L1 5535 6164 -20 21 82 0 0 chr1 258208187 258208236 -23985428 + AT_rich Low_complexity Low_complexity 1 49 0 2207 95 0 0 chr1 258209078 258209386 -23984278 - AluSx SINE Alu 0 308 1 435 218 98 121 chr1 258209549 258209691 -23983973 - L1MC4 LINE L1 0 8042 7898 2080 85 46 3 chr1 258209691 258209974 -23983690 + AluSg SINE Alu 1 295 -15 435 218 98 121 chr1 258209974 258210238 -23983426 - L1MC4 LINE L1 -144 7898 7532 1203 125 12 0 chr1 258211339 258211507 -23982157 - AluSg/x SINE Alu 0 312 143 2479 91 0 0 chr1 258212195 258212503 -23981161 + AluSq SINE Alu 1 308 -5 904 159 4 18 chr1 258213047 258213216 -23980448 - FRAM SINE Alu -12 164 1 825 179 0 0 chr1 258215750 258215884 -23977780 + AluJo SINE Alu 1 134 -178 282 56 0 0 chr1 258216116 258216152 -23977512 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 1029 170 189 5 chr1 258216152 258216364 -23977300 - AluJb SINE Alu -61 251 1 597 279 109 25 chr1 258217790 258217991 -23975673 - MIR SINE MIR -44 218 1 649 298 60 28 chr1 258218131 258218246 -23975418 + MIR SINE MIR 31 141 -121 2100 97 31 3 chr1 258218246 258218535 -23975129 + AluSg SINE Alu 1 297 -13 649 298 60 28 chr1 258218535 258218634 -23975030 + MIR SINE MIR 141 252 -10 399 297 40 27 chr1 258219708 258219856 -23973808 - MIR SINE MIR -17 245 96 21 0 0 0 chr1 258220119 258220140 -23973524 + AT_rich Low_complexity Low_complexity 1 21 0 2419 64 17 0 chr1 258220663 258220961 -23972703 - AluY SINE Alu -8 303 1 1197 160 5 0 chr1 258221331 258221519 -23972145 + AluJo SINE Alu 117 305 -7 2320 78 14 7 chr1 258221647 258221942 -23971722 - AluSp SINE Alu 0 313 17 1053 127 171 33 chr1 258221963 258222238 -23971426 + L1MB8 LINE L1 5812 6124 -54 813 97 0 0 chr1 258222241 258222354 -23971310 - AluSg/x SINE Alu 0 309 197 281 125 54 0 chr1 258222356 258222412 -23971252 + L1MB8 LINE L1 6115 6173 -5 1678 188 24 3 chr1 258222620 258222908 -23970756 + AluJb SINE Alu 1 294 -18 21 0 0 0 chr1 258223869 258223890 -23969774 + AT_rich Low_complexity Low_complexity 1 21 0 629 223 15 8 chr1 258227977 258228107 -23965557 - FLAM_C SINE Alu -1 132 2 2527 72 0 0 chr1 258228195 258228502 -23965162 - AluSg SINE Alu -3 307 1 781 142 0 0 chr1 258229012 258229132 -23964532 + AluSg/x SINE Alu 183 302 -10 222 336 146 9 chr1 258230186 258230296 -23963368 - MIR SINE MIR -20 242 118 711 126 0 91 chr1 258230453 258230596 -23963068 - FLAM_C SINE Alu -5 138 9 483 281 180 18 chr1 258230787 258231004 -23962660 - MIR SINE MIR -6 256 5 1945 109 33 36 chr1 258231180 258231348 -23962316 - AluSx SINE Alu -9 303 135 2403 89 0 0 chr1 258231348 258231651 -23962013 - AluSg SINE Alu -3 307 5 1945 109 33 36 chr1 258231651 258231786 -23961878 - AluSx SINE Alu -177 135 1 1537 168 46 18 chr1 258231852 258232132 -23961532 - AluJo SINE Alu -24 288 1 242 197 68 61 chr1 258232202 258232334 -23961330 + L1MC5 LINE L1 7704 7836 -125 330 288 88 69 chr1 258233501 258233661 -23960003 - L2 LINE L2 0 3272 3110 399 195 61 0 chr1 258234420 258234502 -23959162 + MIR3 SINE MIR 111 197 -11 1757 140 38 14 chr1 258234605 258234897 -23958767 + AluJo SINE Alu 1 299 -13 2181 106 20 0 chr1 258235171 258235464 -23958200 + AluSx SINE Alu 1 299 -13 183 42 0 0 chr1 258237445 258237469 -23956195 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 248 272 146 63 chr1 258237515 258237721 -23955943 + L2 LINE L2 2940 3162 -110 219 297 27 40 chr1 258237820 258237894 -23955770 + L2 LINE L2 3184 3256 -16 559 178 65 98 chr1 258238101 258238261 -23955403 - MIR SINE MIR -10 252 99 1984 89 89 7 chr1 258238261 258238541 -23955123 + AluSx SINE Alu 1 303 -9 559 178 65 98 chr1 258238541 258238594 -23955070 - MIR SINE MIR -163 99 46 183 80 0 0 chr1 258238929 258238954 -23954710 + (GGGAA)n Simple_repeat Simple_repeat 5 29 0 2343 90 0 0 chr1 258239103 258239403 -23954261 - AluSg SINE Alu -10 300 1 1966 79 43 43 chr1 258240071 258240385 -23953279 + AluSc SINE Alu 1 314 0 2199 90 4 0 chr1 258241007 258241286 -23952378 - AluSp SINE Alu -29 284 5 2125 139 0 0 chr1 258241774 258242075 -23951589 + AluSx SINE Alu 1 301 -11 575 236 112 0 chr1 258242513 258242674 -23950990 - MIR SINE MIR -52 210 32 1905 129 3 51 chr1 258242692 258242857 -23950807 - AluSx SINE Alu -16 296 151 2498 63 0 3 chr1 258242857 258243158 -23950506 - AluY SINE Alu -11 300 1 1905 129 3 51 chr1 258243158 258243303 -23950361 - AluSx SINE Alu -161 151 1 888 196 61 28 chr1 258244428 258244642 -23949022 + MER58A DNA MER1_type 3 223 -1 239 365 83 0 chr1 258244886 258245042 -23948622 - MIR SINE MIR -62 200 32 26 30 0 0 chr1 258245122 258245155 -23948509 + AT_rich Low_complexity Low_complexity 1 33 0 2789 137 6 21 chr1 258246093 258246610 -23947054 - L1MA4 LINE L1 0 6300 5792 2161 103 24 0 chr1 258247239 258247529 -23946135 + AluSx SINE Alu 1 297 -15 2439 92 0 0 chr1 258248284 258248590 -23945074 - AluSg SINE Alu -4 306 1 311 252 19 39 chr1 258248594 258248749 -23944915 - L1ME4a LINE L1 -216 5905 5754 313 303 74 6 chr1 258248750 258248912 -23944752 - L1ME4a LINE L1 -406 5715 5543 380 266 65 40 chr1 258249230 258249299 -23944365 - L1ME4a LINE L1 -2343 5465 5399 1987 148 0 14 chr1 258249299 258249596 -23944068 + AluSx SINE Alu 1 293 -19 380 266 65 40 chr1 258249596 258249725 -23943939 - L1ME4a LINE L1 -2409 5399 5262 2238 82 7 0 chr1 258250467 258250773 -23942891 - AluY SINE Alu 0 308 1 294 288 38 38 chr1 258251132 258251316 -23942348 - L2 LINE L2 -865 2449 2266 1341 165 9 9 chr1 258251696 258251908 -23941756 + AluJb SINE Alu 86 297 -15 2303 112 7 0 chr1 258251997 258252302 -23941362 - AluSx SINE Alu -1 311 5 2310 78 0 0 chr1 258252379 258252662 -23941002 + AluY SINE Alu 1 283 -28 303 28 0 0 chr1 258252665 258252701 -23940963 + (CA)n Simple_repeat Simple_repeat 1 36 0 208 196 0 22 chr1 258252721 258252767 -23940897 + (TTA)n Simple_repeat Simple_repeat 2 46 0 209 286 71 61 chr1 258252979 258253077 -23940587 + MIR SINE MIR 34 132 -76 * 224 323 29 0 chr1 258253072 258253144 -23940520 - MIR SINE MIR -119 89 13 33 43 0 0 chr1 258253679 258253726 -23939938 + AT_rich Low_complexity Low_complexity 1 47 0 183 42 0 0 chr1 258253785 258253809 -23939855 + (A)n Simple_repeat Simple_repeat 1 24 0 611 179 41 8 chr1 258253994 258254117 -23939547 + FLAM_C SINE Alu 1 127 -6 543 221 139 29 chr1 258254155 258254436 -23939228 + L1MC5 LINE L1 7603 7914 -47 643 208 0 0 chr1 258254577 258254683 -23938981 - FLAM_C SINE Alu -32 111 6 332 254 39 89 chr1 258254833 258254954 -23938710 - L1ME LINE L1 -420 5701 5576 1807 140 39 11 chr1 258254954 258255240 -23938424 + AluJo SINE Alu 1 294 -18 332 254 39 89 chr1 258255240 258255381 -23938283 - L1ME LINE L1 -545 5576 5417 2096 128 13 10 chr1 258255448 258255752 -23937912 + AluSx SINE Alu 1 305 -7 580 328 161 28 chr1 258255766 258256306 -23937358 - L2 LINE L2 -910 2404 1793 333 211 26 0 chr1 258257089 258257165 -23936499 + MER116 DNA Mariner 3 80 0 1930 130 10 10 chr1 258257441 258257733 -23935931 + AluSx SINE Alu 1 292 -20 346 181 28 0 chr1 258258323 258258395 -23935269 - MER116 DNA Mariner 0 80 7 2286 102 3 6 chr1 258259312 258259626 -23934038 - AluSq SINE Alu 0 313 1 1480 107 0 5 chr1 258259667 258259873 -23933791 - AluSg/x SINE Alu -9 301 97 216 0 0 0 chr1 258259919 258259943 -23933721 + (TG)n Simple_repeat Simple_repeat 2 25 0 198 0 0 0 chr1 258260032 258260054 -23933610 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 251 53 26 0 chr1 258260474 258260512 -23933152 - MER41A LTR ERV1 -116 438 400 2256 118 0 0 chr1 258260544 258260848 -23932816 - AluSx SINE Alu -8 304 1 2725 26 0 0 chr1 258260915 258261226 -23932438 - AluYa5 SINE Alu 0 311 1 2214 129 3 0 chr1 258261233 258261543 -23932121 - AluSx SINE Alu -1 311 1 2132 122 6 34 chr1 258261604 258261925 -23931739 - AluSx SINE Alu 0 312 1 2407 62 0 10 chr1 258261957 258262247 -23931417 - AluSg SINE Alu -22 288 2 1521 160 19 19 chr1 258262483 258262745 -23930919 - AluJo SINE Alu -27 285 24 487 265 157 30 chr1 258262838 258263208 -23930456 - L1ME LINE L1 -313 5808 5392 25 31 0 0 chr1 258263359 258263391 -23930273 + AT_rich Low_complexity Low_complexity 1 32 0 209 33 33 0 chr1 258263394 258263424 -23930240 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1990 126 0 4 chr1 258263427 258263704 -23929960 - AluSx SINE Alu -36 276 1 1815 153 0 66 chr1 258263909 258264243 -23929421 + AluJb SINE Alu 1 312 0 555 100 0 120 chr1 258264550 258264595 -23929069 + HY4 scRNA scRNA 6 34 -59 1837 154 17 10 chr1 258264595 258264894 -23928770 + AluJo SINE Alu 3 303 -9 555 100 0 120 chr1 258264894 258264948 -23928716 + HY4 scRNA scRNA 34 93 0 2194 125 3 3 chr1 258265020 258265333 -23928331 + AluSq SINE Alu 1 313 0 834 176 0 0 chr1 258265347 258265483 -23928181 + AluJo SINE Alu 5 140 -172 313 261 175 33 chr1 258265536 258265747 -23927917 + MIR SINE MIR 21 261 -1 2411 93 3 0 chr1 258266272 258266573 -23927091 - AluSx SINE Alu -10 302 1 774 224 38 22 chr1 258266813 258266996 -23926668 - MER21B LTR ERV1 -661 202 17 203 322 42 25 chr1 258267012 258267130 -23926534 + MIR SINE MIR 85 204 -58 909 226 10 29 chr1 258267336 258267540 -23926124 - MSTD LTR MaLR 0 396 197 830 159 0 38 chr1 258268046 258268178 -23925486 + FLAM_C SINE Alu 1 127 -16 1040 172 33 0 chr1 258268197 258268377 -23925287 - MSTD LTR MaLR -210 186 1 1989 135 3 0 chr1 258268438 258268756 -23924908 - AluSx SINE Alu 0 319 1 2132 86 7 31 chr1 258268934 258269226 -23924438 + AluSc SINE Alu 1 285 -24 543 181 13 81 chr1 258269371 258269438 -23924226 - MLT1H1 LTR MaLR 0 555 502 2044 122 24 14 chr1 258269438 258269734 -23923930 + AluSx SINE Alu 1 299 -13 543 181 13 81 chr1 258269734 258269815 -23923849 - MLT1H1 LTR MaLR -53 502 417 1760 114 0 12 chr1 258270466 258270721 -23922943 - AluSx SINE Alu -6 306 55 250 194 0 0 chr1 258270741 258270803 -23922861 - L1M4 LINE L1 -964 5182 5121 2362 96 7 3 chr1 258270838 258271140 -23922524 - AluSx SINE Alu -9 303 1 1177 198 20 124 chr1 258271177 258271313 -23922351 + AluYb8 SINE Alu 3 151 -167 1807 88 8 4 chr1 258271313 258271564 -23922100 + L1PB1 LINE L1 5898 6149 -2 1177 198 20 124 chr1 258271564 258271775 -23921889 + AluYb8 SINE Alu 151 314 -4 1335 174 55 4 chr1 258272143 258272378 -23921286 + AluJo SINE Alu 34 280 -32 2466 62 0 3 chr1 258272379 258272669 -23920995 - AluY SINE Alu -22 289 1 23 0 0 0 chr1 258272680 258272703 -23920961 + AT_rich Low_complexity Low_complexity 1 23 0 1518 171 73 7 chr1 258272706 258272981 -23920683 + AluJb SINE Alu 1 293 -19 326 262 43 14 chr1 258274005 258274146 -23919518 - L2 LINE L2 -974 2340 2196 632 135 193 140 chr1 258274163 258274321 -23919343 + MER20 DNA MER1_type 2 175 -44 1875 136 3 48 chr1 258274321 258274451 -23919213 + AluJb SINE Alu 1 135 -177 2308 96 0 3 chr1 258274451 258274744 -23918920 - AluSg SINE Alu -18 292 1 1875 136 3 48 chr1 258274744 258274922 -23918742 + AluJb SINE Alu 135 295 -17 632 135 193 140 chr1 258274922 258274970 -23918694 + MER20 DNA MER1_type 175 219 0 1995 118 0 62 chr1 258275057 258275379 -23918285 - AluSx SINE Alu -10 302 1 2190 119 3 3 chr1 258275803 258276097 -23917567 + AluSp SINE Alu 1 294 -19 462 155 28 0 chr1 258276237 258276308 -23917356 + MER2 DNA MER2_type 272 344 -1 2340 99 0 0 chr1 258276330 258276633 -23917031 + AluSg SINE Alu 1 303 -7 450 134 247 0 chr1 258276669 258276766 -23916898 + FLAM_C SINE Alu 11 131 -12 227 181 145 0 chr1 258276944 258277027 -23916637 - HAL1 LINE L1 -1320 1187 1093 2093 102 6 54 chr1 258277083 258277251 -23916413 - AluSx SINE Alu -12 300 152 2143 111 10 0 chr1 258277251 258277549 -23916115 - AluSp SINE Alu -12 301 1 2093 102 6 54 chr1 258277549 258277695 -23915969 - AluSx SINE Alu -160 152 1 558 210 20 0 chr1 258277729 258277829 -23915835 + Tigger3(Golem) DNA MER2_type 1 102 -2927 2294 117 42 42 chr1 258277847 258278021 -23915643 - MER6A DNA MER2_type -264 601 428 2282 86 3 41 chr1 258278021 258278336 -23915328 - AluSx SINE Alu -9 303 1 2294 117 42 42 chr1 258278336 258278564 -23915100 - MER6A DNA MER2_type -436 429 199 2114 119 3 10 chr1 258278564 258278858 -23914806 - AluSc SINE Alu -17 292 1 1857 159 10 3 chr1 258278858 258279154 -23914510 - AluJo SINE Alu -14 298 1 1997 129 3 26 chr1 258279168 258279471 -23914193 - AluSx SINE Alu -16 296 1 2412 73 0 38 chr1 258279480 258279793 -23913871 - AluY SINE Alu -10 301 1 1718 187 27 10 chr1 258279793 258280083 -23913581 - MER6A DNA MER2_type -761 104 67 818 178 27 73 chr1 258280083 258280302 -23913362 - AluSg/x SINE Alu 0 309 101 300 152 0 0 chr1 258280307 258280383 -23913281 - AluJ/FRAM SINE Alu 0 308 233 1857 144 14 0 chr1 258280383 258280667 -23912997 - AluSx SINE Alu -23 289 2 1121 82 0 0 chr1 258280667 258280802 -23912862 - AluSq/x SINE Alu -178 135 1 251 103 0 0 chr1 258280806 258280845 -23912819 - MER6A DNA MER2_type -538 67 29 * 292 64 43 0 chr1 258280840 258280887 -23912777 + Tigger3(Golem) DNA MER2_type 2458 2506 -523 405 156 52 52 chr1 258280887 258280964 -23912700 - AluJ/FLAM SINE Alu -232 80 4 2373 95 0 0 chr1 258280972 258281266 -23912398 - AluSx SINE Alu -18 294 1 29 0 0 0 chr1 258281268 258281297 -23912367 + AT_rich Low_complexity Low_complexity 1 29 0 779 197 0 20 chr1 258281297 258281444 -23912220 + FRAM SINE Alu 18 161 -15 2380 137 117 2 chr1 258281444 258281845 -23911819 + Tigger3(Golem) DNA MER2_type 2582 3028 -1 2502 61 3 0 chr1 258281849 258282145 -23911519 - AluY SINE Alu -14 297 1 1299 124 6 0 chr1 258282173 258282351 -23911313 - AluSq SINE Alu -50 263 85 2387 92 0 3 chr1 258282378 258282673 -23910991 - AluSx SINE Alu -18 294 1 1329 256 59 51 chr1 258282855 258283233 -23910431 + L1MC4 LINE L1 7512 7886 -156 1717 159 14 20 chr1 258283233 258283529 -23910135 - AluJo SINE Alu -18 294 1 462 65 0 0 chr1 258283532 258283594 -23910070 + (TATG)n Simple_repeat Simple_repeat 2 63 0 2255 87 4 0 chr1 258283597 258283874 -23909790 - AluSc SINE Alu -31 278 1 1329 256 59 51 chr1 258283874 258284014 -23909650 + L1MC4 LINE L1 7888 8042 0 1807 102 0 13 chr1 258284253 258284489 -23909175 + AluSc SINE Alu 1 233 -76 629 109 55 27 chr1 258284491 258284601 -23909063 + FLAM_A SINE Alu 30 142 0 648 255 103 20 chr1 258284858 258285062 -23908602 + MER58A DNA MER1_type 4 224 0 2036 121 0 0 chr1 258285096 258285369 -23908295 - AluSx SINE Alu -18 294 22 748 263 55 18 chr1 258285570 258285787 -23907877 - HAL1 LINE L1 -2188 319 95 2368 92 7 0 chr1 258285789 258286092 -23907572 - AluSg SINE Alu -5 305 1 2387 96 0 0 chr1 258286779 258287071 -23906593 + AluSg SINE Alu 1 292 -18 1575 104 5 0 chr1 258287073 258287284 -23906380 + AluSg/x SINE Alu 79 290 -20 2286 95 3 3 chr1 258287385 258287679 -23905985 - AluSp SINE Alu -19 294 1 2219 119 3 0 chr1 258287807 258288102 -23905562 + AluSg SINE Alu 1 296 -14 257 203 40 88 chr1 258288127 258288275 -23905389 - MIR SINE MIR 0 262 122 1811 168 3 3 chr1 258288285 258288588 -23905076 - AluJb SINE Alu -9 303 1 194 0 39 0 chr1 258288653 258288679 -23904985 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1427 118 169 8 chr1 258288685 258288940 -23904724 + AluSg1 SINE Alu 1 296 -13 1983 117 71 0 chr1 258288999 258289282 -23904382 + AluSx SINE Alu 1 303 -9 1820 94 14 28 chr1 258289423 258289711 -23903953 - L1MB3 LINE L1 0 6183 5900 1185 120 0 0 chr1 258289721 258289879 -23903785 - AluSq SINE Alu -17 296 139 2386 109 0 0 chr1 258289880 258290193 -23903471 - AluSq SINE Alu 0 313 1 26 0 0 0 chr1 258290291 258290317 -23903347 + AT_rich Low_complexity Low_complexity 1 26 0 2302 108 3 3 chr1 258290678 258290983 -23902681 + AluSg SINE Alu 1 305 -5 2029 75 41 41 chr1 258291257 258291398 -23902266 + AluSg SINE Alu 2 142 -168 2414 72 7 16 chr1 258291398 258291705 -23901959 + AluSx SINE Alu 1 304 -8 2029 75 41 41 chr1 258291705 258291856 -23901808 + AluSg SINE Alu 141 294 -16 21 0 0 0 chr1 258292455 258292476 -23901188 + AT_rich Low_complexity Low_complexity 1 21 0 251 111 0 0 chr1 258292574 258292610 -23901054 - L1ME3A LINE L1 -7 6163 6128 238 160 167 147 chr1 258292658 258292717 -23900947 - L1ME3A LINE L1 -52 6118 6062 1105 159 52 26 chr1 258292717 258292950 -23900714 + L1MB3 LINE L1 5941 6179 -4 238 160 167 147 chr1 258292950 258293040 -23900624 - L1ME3A LINE L1 -108 6062 5966 1936 154 7 0 chr1 258293434 258293739 -23899925 + AluJb SINE Alu 1 307 -5 1092 120 0 46 chr1 258293775 258293950 -23899714 - AluSg/x SINE Alu 0 310 144 363 113 75 0 chr1 258293952 258294005 -23899659 + AluSc SINE Alu 193 249 -50 756 167 117 0 chr1 258294005 258294167 -23899497 + AluJo SINE Alu 98 278 -34 2088 131 0 0 chr1 258294847 258295137 -23898527 - AluSx SINE Alu -21 291 2 441 242 65 0 chr1 258295278 258295402 -23898262 + MIR SINE MIR 97 228 -34 1719 177 10 16 chr1 258295807 258296118 -23897546 - AluJb SINE Alu -3 309 1 2203 125 3 6 chr1 258296300 258296613 -23897051 + AluSx SINE Alu 1 312 0 878 154 0 0 chr1 258296668 258296798 -23896866 + AluJo SINE Alu 5 134 -178 758 133 0 0 chr1 258297195 258297308 -23896356 + AluSg/x SINE Alu 182 294 -18 22 0 0 0 chr1 258297366 258297388 -23896276 + AT_rich Low_complexity Low_complexity 1 22 0 578 211 0 47 chr1 258297730 258297858 -23895806 - FLAM_C SINE Alu -20 123 2 1884 153 7 10 chr1 258297982 258298289 -23895375 - AluJb SINE Alu -6 306 1 1712 155 64 0 chr1 258299108 258299372 -23894292 + AluJo SINE Alu 2 282 -30 2471 70 6 16 chr1 258299388 258299700 -23893964 - AluY SINE Alu -2 309 1 207 0 0 0 chr1 258299714 258299737 -23893927 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2178 80 4 11 chr1 258299746 258300022 -23893642 - AluSg SINE Alu -36 274 1 21 0 0 0 chr1 258300050 258300071 -23893593 + AT_rich Low_complexity Low_complexity 1 21 0 2558 51 0 0 chr1 258300619 258300915 -23892749 - AluY SINE Alu -15 296 1 2367 97 0 3 chr1 258301145 258301444 -23892220 - AluSg SINE Alu -12 298 1 1807 196 0 0 chr1 258301635 258301947 -23891717 + AluJb SINE Alu 1 312 0 225 143 0 0 chr1 258301960 258301995 -23891669 - L1MC/D LINE L1 -582 5660 5626 2200 95 0 49 chr1 258302020 258302325 -23891339 + AluSg SINE Alu 2 291 -19 718 201 24 71 chr1 258302340 258302439 -23891225 + L1ME LINE L1 5431 5521 -643 2149 95 3 7 chr1 258302439 258302754 -23890910 - AluSp SINE Alu 0 314 1 718 201 24 71 chr1 258302754 258302822 -23890842 + L1ME LINE L1 5521 5591 -573 2236 104 3 3 chr1 258303226 258303523 -23890141 + AluSg SINE Alu 1 297 -13 1657 182 70 35 chr1 258303743 258304116 -23889548 - MLT1B LTR MaLR -4 386 1 245 190 17 0 chr1 258304455 258304513 -23889151 - L1MD3 LINE L1 0 7995 7937 1848 211 134 36 chr1 258304532 258304726 -23888938 - L1MC4 LINE L1 -152 7890 7716 2064 162 6 6 chr1 258304726 258305059 -23888605 + MER1B DNA MER1_type 5 337 0 1848 211 134 36 chr1 258305059 258305453 -23888211 - L1MC4 LINE L1 -326 7716 7244 233 219 267 0 chr1 258305454 258305559 -23888105 - L1MC4 LINE L1 -987 7055 6923 817 145 0 36 chr1 258305734 258305872 -23887792 + FLAM_C SINE Alu 1 133 0 2268 86 21 0 chr1 258305881 258306171 -23887493 + AluSx SINE Alu 1 296 -16 1098 119 0 0 chr1 258306242 258306402 -23887262 - AluY SINE Alu -11 300 141 22 0 0 0 chr1 258306516 258306538 -23887126 + GC_rich Low_complexity Low_complexity 1 22 0 218 341 0 0 chr1 258306615 258306703 -23886961 + C-rich Low_complexity Low_complexity 1 88 0 1503 91 5 0 chr1 258307063 258307274 -23886390 - AluSg/x SINE Alu 0 308 97 254 262 83 0 chr1 258307284 258307368 -23886296 + Charlie4 DNA MER1_type 1856 1946 -15 333 286 58 42 chr1 258307416 258307605 -23886059 - L2 LINE L2 -744 2570 2379 259 258 124 10 chr1 258307711 258307808 -23885856 - MIR SINE MIR 0 262 155 409 141 115 26 chr1 258307836 258307914 -23885750 + THE1B LTR MaLR 1 85 -279 1393 223 125 104 chr1 258307917 258308908 -23884756 - HAL1 LINE L1 -39 2468 1457 225 250 50 12 chr1 258308926 258309006 -23884658 - HAL1 LINE L1 -1271 1236 1154 1848 146 16 50 chr1 258309111 258309434 -23884230 - AluJo SINE Alu 0 312 1 2023 154 13 13 chr1 258309798 258309930 -23883734 + AluJo SINE Alu 1 132 -180 2416 95 0 0 chr1 258309930 258310235 -23883429 + AluSg SINE Alu 1 305 -5 2023 154 13 13 chr1 258310235 258310413 -23883251 + AluJo SINE Alu 131 311 -1 2116 101 29 0 chr1 258310548 258310825 -23882839 + AluSc SINE Alu 1 285 -24 1881 158 0 48 chr1 258311134 258311450 -23882214 + AluSx SINE Alu 1 301 -11 825 205 8 92 chr1 258311575 258311724 -23881940 - L1MB8 LINE L1 0 6178 6055 2092 126 0 7 chr1 258311724 258312010 -23881654 + AluSx SINE Alu 12 295 -17 825 205 8 92 chr1 258312010 258312099 -23881565 - L1MB8 LINE L1 -123 6055 5960 605 167 24 32 chr1 258312100 258312226 -23881438 - FLAM_C SINE Alu -1 142 18 3726 167 64 21 chr1 258312230 258313257 -23880407 - L1MB8 LINE L1 -198 5986 4928 983 135 0 0 chr1 258313264 258313397 -23880267 + AluJo SINE Alu 1 133 -179 1015 151 7 0 chr1 258313546 258313738 -23879926 + AluJo SINE Alu 130 322 0 392 158 13 13 chr1 258313741 258313817 -23879847 - L1MB8 LINE L1 -1217 4929 4854 692 248 88 4 chr1 258314235 258314497 -23879167 - L2 LINE L2 -672 2642 2359 2343 112 0 0 chr1 258314797 258315101 -23878563 - AluSx SINE Alu -7 305 2 1660 196 50 65 chr1 258315135 258315536 -23878128 + L1ME LINE L1 4765 5170 -996 714 202 0 0 chr1 258315536 258315660 -23878004 + FLAM_A SINE Alu 1 124 -9 1660 196 50 65 chr1 258315660 258315753 -23877911 + L1ME LINE L1 5170 5263 -903 2241 84 0 10 chr1 258315753 258316062 -23877602 + AluY SINE Alu 1 306 -5 1660 196 50 65 chr1 258316062 258316076 -23877588 + L1ME LINE L1 5263 5276 -890 2022 110 21 0 chr1 258316076 258316367 -23877297 + AluSc SINE Alu 1 297 -12 1660 196 50 65 chr1 258316367 258316395 -23877269 + L1ME LINE L1 5276 5303 -863 913 138 5 53 chr1 258316395 258316530 -23877134 + L1MA8 LINE L1 6110 6250 -41 2214 80 0 68 chr1 258316530 258316854 -23876810 + AluSp SINE Alu 1 302 -11 2202 92 0 3 chr1 258316855 258317149 -23876515 + AluSg SINE Alu 2 294 -16 913 138 5 53 chr1 258317149 258317199 -23876465 + L1MA8 LINE L1 6249 6288 -3 1660 196 50 65 chr1 258317199 258317483 -23876181 + L1ME LINE L1 5303 5567 -599 2323 91 0 0 chr1 258317483 258317792 -23875872 - AluSc SINE Alu 0 309 1 1660 196 50 65 chr1 258317792 258317892 -23875772 + L1ME LINE L1 5567 5667 -499 2085 108 10 0 chr1 258318011 258318308 -23875356 + AluSx SINE Alu 1 300 -12 1854 138 0 14 chr1 258318326 258318608 -23875056 + AluSx SINE Alu 13 290 -22 423 308 0 23 chr1 258319514 258319644 -23874020 - MIR SINE MIR -117 145 19 1823 93 50 7 chr1 258319726 258320005 -23873659 - AluSc SINE Alu -18 291 1 633 261 117 26 chr1 258320051 258320281 -23873383 + MIR SINE MIR 6 256 -6 718 185 15 0 chr1 258320420 258320550 -23873114 - FLAM_C SINE Alu -1 132 1 924 259 55 44 chr1 258320651 258321018 -23872646 + HAL1 LINE L1 587 957 -1550 920 217 0 0 chr1 258321018 258321198 -23872466 + AluJo SINE Alu 121 300 -12 1098 252 88 67 chr1 258321244 258321314 -23872350 + HAL1 LINE L1 1046 1113 -1394 1951 148 3 0 chr1 258321314 258321625 -23872039 + AluSq SINE Alu 1 312 -1 1098 252 88 67 chr1 258321625 258321878 -23871786 + HAL1 LINE L1 1113 1359 -1148 2090 86 45 14 chr1 258321878 258322170 -23871494 + AluY SINE Alu 1 301 -10 1098 252 88 67 chr1 258322170 258322249 -23871415 + HAL1 LINE L1 1359 1435 -1072 222 37 0 0 chr1 258322249 258322276 -23871388 + (GA)n Simple_repeat Simple_repeat 2 28 0 1098 252 88 67 chr1 258322276 258322312 -23871352 + HAL1 LINE L1 1435 1469 -1038 2045 65 0 8 chr1 258322312 258322572 -23871092 + AluY SINE Alu 37 294 -17 1098 252 88 67 chr1 258322572 258322769 -23870895 + HAL1 LINE L1 1469 1697 -810 1870 153 0 7 chr1 258322773 258323073 -23870591 + AluJb SINE Alu 1 298 -14 1026 169 46 50 chr1 258323103 258323240 -23870424 + AluJo SINE Alu 1 138 -174 2155 106 3 10 chr1 258323240 258323543 -23870121 + AluSx SINE Alu 1 301 -11 1026 169 46 50 chr1 258323543 258323624 -23870040 + AluJo SINE Alu 138 218 -94 198 0 0 0 chr1 258323661 258323683 -23869981 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 523 165 12 0 chr1 258324451 258324536 -23869128 + AluJo/FLAM SINE Alu 28 113 -199 1372 147 0 18 chr1 258324536 258324760 -23868904 - AluSx SINE Alu -44 268 49 419 203 58 80 chr1 258324794 258324932 -23868732 + FRAM SINE Alu 1 131 -45 912 157 13 0 chr1 258324940 258325093 -23868571 + AluSg/x SINE Alu 154 308 -4 1660 81 40 5 chr1 258325965 258326187 -23867477 + MER30 DNA MER1_type 1 230 0 338 288 272 5 chr1 258326359 258326550 -23867114 - MIR SINE MIR -9 253 12 770 125 8 25 chr1 258328021 258328141 -23865523 - FRAM SINE Alu -21 155 38 1749 142 0 7 chr1 258328153 258328469 -23865195 - AluJb SINE Alu 0 319 6 1843 101 66 10 chr1 258328799 258329087 -23864577 - Tigger7 DNA MER2_type -14 2473 2170 * 4960 143 17 35 chr1 258329085 258329314 -23864350 - Tigger7 DNA MER2_type -1670 817 585 1968 134 3 3 chr1 258329314 258329619 -23864045 - AluSx SINE Alu -1 311 7 4960 143 17 35 chr1 258329619 258330221 -23863443 - Tigger7 DNA MER2_type -1902 585 1 338 301 80 35 chr1 258330222 258330335 -23863329 - L2 LINE L2 -19 3253 3136 741 309 181 30 chr1 258330410 258331000 -23862664 - L2 LINE L2 0 3313 2633 2261 90 6 0 chr1 258331046 258331357 -23862307 + AluSp SINE Alu 1 313 0 5419 146 67 74 chr1 258331593 258332997 -23860667 + pTR5 LTR ERV1 741 2438 0 1285 167 40 5 chr1 258333011 258333233 -23860431 - MER30 DNA MER1_type 0 230 1 1383 163 6 110 chr1 258333448 258333785 -23859879 - AluSx SINE Alu 0 302 1 565 25 0 25 chr1 258333915 258333996 -23859668 + (TCTCCC)n Simple_repeat Simple_repeat 1 79 0 9566 55 7 81 chr1 258333997 258335438 -23858226 + SVA Other Other 52 1386 0 467 247 67 28 chr1 258335453 258335631 -23858033 + L1ME3 LINE L1 4916 5100 -1046 * 515 234 101 32 chr1 258335620 258335808 -23857856 + L1ME3 LINE L1 5354 5554 -610 189 0 0 0 chr1 258335808 258335829 -23857835 + (A)n Simple_repeat Simple_repeat 1 21 0 845 204 0 0 chr1 258335946 258336103 -23857561 + AluJb SINE Alu 133 289 -23 22 56 0 0 chr1 258336103 258336139 -23857525 + AT_rich Low_complexity Low_complexity 1 36 0 692 222 26 0 chr1 258336148 258336301 -23857363 + L1MCa LINE L1 1 157 -6269 1735 208 47 69 chr1 258336442 258336518 -23857146 + L1MB3 LINE L1 4296 4372 -1774 2081 109 14 0 chr1 258336518 258336812 -23856852 + AluSx SINE Alu 1 298 -14 1735 208 47 69 chr1 258336812 258336939 -23856725 + L1MB3 LINE L1 4372 4500 -1646 1675 168 26 0 chr1 258336939 258337243 -23856421 + AluJb SINE Alu 1 312 0 1735 208 47 69 chr1 258337243 258337833 -23855831 + L1MB3 LINE L1 4500 5019 -1127 1329 201 33 49 chr1 258338034 258338338 -23855326 + AluJb SINE Alu 1 299 -3 1949 118 19 25 chr1 258338681 258338996 -23854668 + AluSq SINE Alu 1 313 0 2114 104 3 3 chr1 258338997 258339294 -23854370 + AluSp SINE Alu 1 297 -16 1000 193 0 17 chr1 258339531 258339712 -23853952 + FAM SINE Alu 1 47 -2 487 247 57 0 chr1 258339713 258339871 -23853793 + L1ME3 LINE L1 5730 5896 -266 1770 139 0 0 chr1 258339882 258340149 -23853515 + AluSx SINE Alu 14 280 -32 1449 153 20 58 chr1 258340183 258340478 -23853186 + AluJb SINE Alu 9 292 -20 295 70 70 70 chr1 258340484 258340541 -23853123 + L1M4b LINE L1 1355 1411 -5448 * 355 223 3 0 chr1 258340533 258340622 -23853042 + L1M4b LINE L1 1924 2014 -4841 819 209 0 0 chr1 258340623 258340771 -23852893 - FRAM SINE Alu -23 153 6 811 211 45 31 chr1 258340776 258340999 -23852665 + L1M4b LINE L1 2005 2230 -4729 2027 113 0 3 chr1 258340999 258341311 -23852353 + AluSq SINE Alu 1 311 0 1096 207 15 15 chr1 258341321 258341591 -23852073 + L1MB3 LINE L1 5010 5279 -867 1170 179 0 9 chr1 258341594 258341817 -23851847 + AluJo SINE Alu 86 306 -6 711 160 59 0 chr1 258341839 258341958 -23851706 + FLAM_C SINE Alu 2 127 -16 3753 177 28 74 chr1 258341971 258342128 -23851536 + L1MB3 LINE L1 5308 5471 -712 351 0 0 0 chr1 258342128 258342167 -23851497 + (CA)n Simple_repeat Simple_repeat 2 40 0 3753 177 28 74 chr1 258342167 258342453 -23851211 + L1MB3 LINE L1 5471 5769 -414 2245 85 10 7 chr1 258342453 258342759 -23850905 + AluSc SINE Alu 1 307 -2 3753 177 28 74 chr1 258342759 258343230 -23850434 + L1MB3 LINE L1 5769 6181 -2 440 237 30 15 chr1 258343226 258343357 -23850307 + L1M4b LINE L1 2205 2337 -4622 * 204 227 0 0 chr1 258343395 258343439 -23850225 + (CAG)n Simple_repeat Simple_repeat 2 45 0 419 137 0 0 chr1 258343747 258343820 -23849844 + Alu SINE Alu 240 312 0 875 188 15 59 chr1 258343820 258343859 -23849805 + L1MB7 LINE L1 5440 5479 -701 7975 55 1 0 chr1 258343859 258344824 -23848840 - LTR5 LTR ERVK -3 966 1 875 188 15 59 chr1 258344824 258344986 -23848678 + L1MB7 LINE L1 5479 5632 -548 1127 160 103 130 chr1 258345007 258345291 -23848373 + LTR45B LTR ERV1 21 290 -199 1936 152 7 0 chr1 258345291 258345593 -23848071 - AluSx SINE Alu -8 304 1 1127 160 103 130 chr1 258345593 258345745 -23847919 + LTR45B LTR ERV1 290 445 -44 1529 152 174 7 chr1 258345790 258346100 -23847564 - MER51A LTR ERV1 -16 618 257 237 83 0 0 chr1 258346098 258346134 -23847530 - MER51A LTR ERV1 -598 36 1 * 270 167 56 0 chr1 258346134 258346181 -23847483 + LTR45 LTR ERV1 476 525 0 2541 146 7 22 chr1 258346225 258346671 -23846993 + L1MB7 LINE L1 5727 6165 -19 721 182 16 0 chr1 258346689 258346810 -23846854 + FLAM_C SINE Alu 7 129 -14 823 92 0 0 chr1 258346910 258347019 -23846645 - AluY SINE Alu -202 109 1 2328 84 3 0 chr1 258347203 258347500 -23846164 + AluSc SINE Alu 1 298 -11 230 314 49 20 chr1 258348251 258348353 -23845311 + MLT1J LTR MaLR 121 225 -286 2121 125 0 0 chr1 258349371 258349683 -23843981 - AluSx SINE Alu 0 312 1 225 315 157 0 chr1 258349684 258349773 -23843891 + L2 LINE L2 3169 3271 -1 237 333 86 0 chr1 258349793 258349886 -23843778 - Tigger8 DNA MER2_type -482 184 84 1943 140 10 0 chr1 258349886 258350178 -23843486 + AluSq SINE Alu 3 297 -16 1819 132 24 10 chr1 258350211 258350500 -23843164 + AluJb SINE Alu 3 295 -17 2253 92 0 0 chr1 258350534 258350828 -23842836 + AluSg SINE Alu 1 294 -16 1240 219 179 40 chr1 258350854 258351329 -23842335 + L1ME3A LINE L1 5630 6170 0 1952 139 0 0 chr1 258351333 258351634 -23842030 + AluSx SINE Alu 1 301 -11 2232 77 3 13 chr1 258351667 258351967 -23841697 + AluY SINE Alu 1 297 -14 1124 131 106 5 chr1 258352821 258353020 -23840644 + AluSg/x SINE Alu 83 301 -9 229 309 21 31 chr1 258353137 258353234 -23840430 + L2 LINE L2 2881 2976 -296 2146 88 14 0 chr1 258353449 258353743 -23839921 - AluSx SINE Alu -14 298 1 875 129 8 0 chr1 258354380 258354512 -23839152 + AluJ SINE Alu 1 133 -169 2211 102 0 0 chr1 258354522 258354816 -23838848 + AluSx SINE Alu 1 294 -18 40 0 0 0 chr1 258354820 258354860 -23838804 + AT_rich Low_complexity Low_complexity 1 40 0 834 169 75 0 chr1 258354866 258355026 -23838638 + AluJ SINE Alu 120 291 -21 2289 93 0 0 chr1 258355126 258355437 -23838227 - AluY SINE Alu 0 311 1 1450 191 11 4 chr1 258355469 258355747 -23837917 + AluJb SINE Alu 1 280 -32 2008 139 3 3 chr1 258355748 258356057 -23837607 - AluSx SINE Alu -3 309 1 1763 171 0 3 chr1 258356363 258356673 -23836991 + AluSx SINE Alu 1 309 -3 2144 98 0 0 chr1 258356675 258356971 -23836693 + AluSg SINE Alu 1 296 -14 2263 97 0 0 chr1 258357216 258357515 -23836149 - AluSg SINE Alu -11 299 1 221 0 35 0 chr1 258357515 258357544 -23836120 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1659 158 7 4 chr1 258357547 258357820 -23835844 - AluJb SINE Alu -30 282 9 947 148 25 0 chr1 258357863 258358025 -23835639 + AluSg/x SINE Alu 133 298 -14 293 278 92 58 chr1 258358044 258358091 -23835573 - MIR3 SINE MIR -7 201 157 429 272 59 12 chr1 258358091 258358260 -23835404 + MER5B DNA MER1_type 2 178 0 293 278 92 58 chr1 258358260 258358385 -23835279 - MIR3 SINE MIR -51 157 23 321 143 20 50 chr1 258358863 258358952 -23834712 - 7SLRNA srpRNA srpRNA -6 314 238 435 209 198 39 chr1 258359186 258359368 -23834296 + HAL1 LINE L1 1663 1873 -634 2341 84 0 0 chr1 258360005 258360302 -23833362 - AluSx SINE Alu -15 297 1 460 234 97 142 chr1 258361121 258361403 -23832261 - L2 LINE L2 -1 3312 3052 2461 59 3 0 chr1 258361403 258361707 -23831957 + AluSp SINE Alu 2 306 -7 460 234 97 142 chr1 258361707 258361826 -23831838 - L2 LINE L2 -261 3052 2929 242 103 0 26 chr1 258362291 258362330 -23831334 + Alu SINE Alu 1 38 -261 1879 134 21 0 chr1 258362457 258362747 -23830917 - AluSx SINE Alu -16 296 1 1782 79 162 0 chr1 258362836 258363089 -23830575 - AluSp SINE Alu -9 294 1 480 35 0 0 chr1 258363231 258363289 -23830375 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 538 183 0 0 chr1 258363291 258363373 -23830291 - AluSg SINE Alu -31 281 200 1061 120 7 0 chr1 258363373 258363523 -23830141 - AluSg SINE Alu -159 151 1 309 244 100 0 chr1 258363628 258363718 -23829946 + MIR SINE MIR 66 164 -98 273 154 58 0 chr1 258363718 258363770 -23829894 - MER69 DNA AcHobo -1141 85 31 253 307 13 0 chr1 258363952 258364027 -23829637 + LTR16C LTR ERVL 175 250 -241 255 169 31 29 chr1 258364062 258364201 -23829463 + AluJo SINE Alu 45 138 -164 277 170 0 0 chr1 258364201 258364254 -23829410 - MER4A LTR ERV1 0 664 612 458 165 59 0 chr1 258364256 258364341 -23829323 + AluS SINE Alu 2 91 -222 1105 98 219 145 chr1 258364341 258364399 -23829265 - MER4A LTR ERV1 -86 578 526 2101 118 0 13 chr1 258364399 258364714 -23828950 - AluSx SINE Alu -1 311 1 1105 98 219 145 chr1 258364714 258364725 -23828939 - MER4A LTR ERV1 -138 526 517 2226 90 3 0 chr1 258364725 258365024 -23828640 - AluSq SINE Alu -8 305 6 1105 98 219 145 chr1 258365024 258365250 -23828414 - MER4A LTR ERV1 -147 517 260 2290 78 3 0 chr1 258365253 258365548 -23828116 - AluY SINE Alu -15 296 1 566 155 10 10 chr1 258365567 258365664 -23828000 - MER4A LTR ERV1 -567 97 1 684 174 129 0 chr1 258365664 258365796 -23827868 + AluJb SINE Alu 147 295 -17 2114 119 0 6 chr1 258365797 258366108 -23827556 + AluSx SINE Alu 1 309 -3 226 263 38 0 chr1 258366117 258366197 -23827467 - L1ME3 LINE L1 -13 6149 6067 550 242 106 25 chr1 258366232 258366393 -23827271 + LTR16C LTR ERVL 305 478 -13 427 255 69 34 chr1 258366412 258366616 -23827048 - L2 LINE L2 -261 3052 2842 2693 13 0 0 chr1 258366871 258367176 -23826488 + AluY SINE Alu 1 305 -6 541 156 52 0 chr1 258367619 258367715 -23825949 + L1MB2 LINE L1 5941 6041 -130 267 191 0 0 chr1 258367717 258367780 -23825884 + T-rich Low_complexity Low_complexity 1 63 0 518 157 20 95 chr1 258367780 258367881 -23825783 + L1MB2 LINE L1 6029 6117 -54 2171 96 0 17 chr1 258367881 258368183 -23825481 + AluSx SINE Alu 3 299 -13 518 157 20 95 chr1 258368183 258368228 -23825436 + L1MB2 LINE L1 6117 6164 -7 1942 133 33 0 chr1 258369147 258369449 -23824215 + AluSx SINE Alu 1 312 0 245 169 0 0 chr1 258369449 258369508 -23824156 + L1PB1 LINE L1 6093 6151 0 313 288 123 23 chr1 258369559 258369861 -23823803 + L1ME LINE L1 5482 5813 -308 1228 137 0 6 chr1 258370064 258370247 -23823417 - AluSx SINE Alu -130 182 1 352 287 271 6 chr1 258370290 258370471 -23823193 + MIR SINE MIR 25 253 -9 375 274 34 63 chr1 258370947 258371122 -23822542 + MIR SINE MIR 14 183 -79 836 129 0 29 chr1 258371210 258371350 -23822314 - AluSg/x SINE Alu -32 280 145 2175 117 0 3 chr1 258371406 258371715 -23821949 - AluSq SINE Alu -5 308 1 2538 45 0 3 chr1 258371780 258372090 -23821574 - AluY SINE Alu -2 309 1 1493 171 3 78 chr1 258372632 258372797 -23820867 - AluJb SINE Alu -14 298 122 2109 118 0 0 chr1 258372797 258373094 -23820570 - AluSq SINE Alu -16 297 1 2179 62 4 0 chr1 258373104 258373380 -23820284 - AluY SINE Alu -5 306 30 1493 171 3 78 chr1 258373380 258373525 -23820139 - AluJb SINE Alu -199 113 1 1421 175 47 11 chr1 258374042 258374169 -23819495 + AluJb SINE Alu 1 122 -186 2084 109 0 23 chr1 258374169 258374471 -23819193 + AluSg SINE Alu 1 295 -15 1421 175 47 11 chr1 258374471 258374641 -23819023 + AluJb SINE Alu 122 308 0 253 242 137 11 chr1 258374838 258374933 -23818731 + MIR SINE MIR 80 186 -76 203 286 174 45 chr1 258374992 258375170 -23818494 + L2 LINE L2 3072 3272 0 508 257 21 127 chr1 258375376 258375568 -23818096 + MIR SINE MIR 6 160 -102 1976 125 0 14 chr1 258375568 258375864 -23817800 + AluJb SINE Alu 12 303 -9 508 257 21 127 chr1 258375864 258375955 -23817709 + MIR SINE MIR 160 259 -3 198 354 116 53 chr1 258376067 258376369 -23817295 - L2 LINE L2 -18 3254 2934 826 131 0 114 chr1 258376393 258376494 -23817170 - AluSc SINE Alu -27 282 208 2344 47 13 0 chr1 258376494 258376792 -23816872 + AluY SINE Alu 1 302 -9 826 131 0 114 chr1 258376792 258376865 -23816799 - AluSc SINE Alu -101 208 128 218 254 85 0 chr1 258377084 258377143 -23816521 - L2 LINE L2 -1051 2263 2200 2236 81 0 3 chr1 258377152 258377461 -23816203 - AluY SINE Alu -3 308 1 1866 108 35 11 chr1 258377461 258377747 -23815917 - AluSg SINE Alu -15 295 3 1200 157 157 27 chr1 258378087 258378234 -23815430 - AluJo SINE Alu -17 295 169 1920 127 0 62 chr1 258378234 258378557 -23815107 + AluSx SINE Alu 1 303 -9 1200 157 157 27 chr1 258378557 258378670 -23814994 - AluJo SINE Alu -143 169 1 2083 110 0 28 chr1 258379245 258379564 -23814100 - AluSx SINE Alu -1 311 2 2183 89 13 7 chr1 258380440 258380744 -23812920 + AluSx SINE Alu 1 306 -6 550 193 55 18 chr1 258380820 258380929 -23812735 + AluJb SINE Alu 5 117 -195 2136 96 3 7 chr1 258380932 258381224 -23812440 - AluSx SINE Alu -17 295 5 1643 138 21 17 chr1 258381334 258381623 -23812041 + AluJo SINE Alu 23 312 0 1566 115 0 0 chr1 258381759 258381985 -23811679 + AluSg/x SINE Alu 84 309 -3 2002 176 94 3 chr1 258383250 258383925 -23809739 + L1MB8 LINE L1 4877 5605 -579 530 145 12 0 chr1 258383927 258384030 -23809634 + L1MB8 LINE L1 5778 5882 -298 22 35 0 0 chr1 258384030 258384059 -23809605 + AT_rich Low_complexity Low_complexity 1 29 0 964 157 0 0 chr1 258384072 258384225 -23809439 - FRAM SINE Alu -26 150 1 888 141 0 15 chr1 258384239 258384374 -23809290 + FLAM_C SINE Alu 1 133 0 1544 161 43 10 chr1 258384381 258384680 -23808984 + L1MB8 LINE L1 5864 6172 -6 1273 184 81 4 chr1 258384680 258384952 -23808712 + AluJo SINE Alu 1 293 -19 2141 103 3 0 chr1 258385007 258385307 -23808357 - AluSx SINE Alu -11 301 1 2419 72 0 0 chr1 258385596 258385902 -23807762 - AluY SINE Alu -5 306 1 1436 151 8 20 chr1 258386020 258386272 -23807392 - AluJb SINE Alu -22 290 42 503 182 231 28 chr1 258386273 258386416 -23807248 - AluJo SINE Alu -137 175 4 1592 128 50 28 chr1 258386540 258386822 -23806842 + AluSx SINE Alu 1 288 -24 501 188 125 0 chr1 258386873 258386985 -23806679 + FAM SINE Alu 33 158 -27 1085 143 6 11 chr1 258387043 258387218 -23806446 + AluJb SINE Alu 3 176 -136 324 0 0 0 chr1 258387327 258387363 -23806301 + (TG)n Simple_repeat Simple_repeat 2 37 0 721 137 8 26 chr1 258387363 258387480 -23806184 - FLAM_C SINE Alu -18 115 1 2112 102 0 13 chr1 258387517 258387832 -23805832 + AluSx SINE Alu 1 311 -1 227 351 64 0 chr1 258387947 258388041 -23805623 + MIR SINE MIR 132 231 -31 213 226 12 24 chr1 258389051 258389135 -23804529 + (CGG)n Simple_repeat Simple_repeat 2 84 0 27 0 0 0 chr1 258389143 258389170 -23804494 + GC_rich Low_complexity Low_complexity 1 27 0 1181 210 65 46 chr1 258389899 258389959 -23803705 + L1MC5 LINE L1 7317 7374 -587 1878 124 3 10 chr1 258389959 258390265 -23803399 + AluSx SINE Alu 3 306 -6 1181 210 65 46 chr1 258390265 258390571 -23803093 + L1MC5 LINE L1 7374 7690 -271 1517 184 69 4 chr1 258390577 258390854 -23802810 - AluJb SINE Alu -7 295 1 1468 171 0 67 chr1 258391376 258391507 -23802157 + AluJo SINE Alu 7 145 -167 2138 70 13 13 chr1 258391507 258391805 -23801859 + AluY SINE Alu 2 299 -12 1468 171 0 67 chr1 258391805 258392001 -23801663 + AluJo SINE Alu 145 312 0 2077 109 3 0 chr1 258392039 258392332 -23801332 - AluSx SINE Alu -18 294 1 2186 101 7 0 chr1 258392822 258393128 -23800536 + AluSg1 SINE Alu 1 308 -1 1233 136 0 0 chr1 258393535 258393726 -23799938 - AluSg/x SINE Alu 0 310 120 250 271 250 21 chr1 258395895 258396083 -23797581 + L2 LINE L2 2828 3058 -214 302 275 77 11 chr1 258396466 258396557 -23797107 + L3 LINE CR1 1474 1570 -7 857 266 25 12 chr1 258396625 258396869 -23796795 - MER112 DNA MER1_type -6 254 8 2289 60 0 40 chr1 258396969 258397271 -23796393 - AluY SINE Alu -15 296 7 846 156 0 22 chr1 258397276 258397411 -23796253 - FLAM_C SINE Alu -1 132 1 342 302 23 51 chr1 258397746 258397945 -23795719 + MIR SINE MIR 30 222 -40 25 0 0 0 chr1 258397952 258397977 -23795687 + AT_rich Low_complexity Low_complexity 1 25 0 2167 95 0 10 chr1 258398662 258398832 -23794832 - AluSc SINE Alu -8 301 134 2452 65 0 0 chr1 258398832 258399141 -23794523 - AluY SINE Alu -2 309 1 2167 95 0 10 chr1 258399141 258399274 -23794390 - AluSc SINE Alu -175 134 1 1569 168 25 7 chr1 258399292 258399578 -23794086 - AluJo SINE Alu -21 291 1 345 259 9 0 chr1 258399593 258399701 -23793963 + L1MC4 LINE L1 5813 5921 -1887 2523 44 0 0 chr1 258399872 258400169 -23793495 - AluY SINE Alu -14 297 1 1780 130 39 11 chr1 258401067 258401351 -23792313 - AluJb SINE Alu -7 305 14 637 196 92 26 chr1 258401676 258401829 -23791835 - MIR SINE MIR -38 224 62 303 204 37 0 chr1 258402710 258402764 -23790900 + L1MC4 LINE L1 6614 6669 -1373 676 232 54 39 chr1 258403152 258403411 -23790253 - L1MC5 LINE L1 -169 7792 7530 1876 114 69 0 chr1 258403411 258403701 -23789963 - AluSg SINE Alu 0 310 1 2255 89 0 0 chr1 258403703 258403996 -23789668 - AluSg SINE Alu -17 293 1 242 204 74 46 chr1 258404007 258404021 -23789643 - L1MA10 LINE L1 0 6334 6321 500 234 55 8 chr1 258404021 258404149 -23789515 - L1ME3A LINE L1 -8 6162 6029 364 96 0 0 chr1 258404147 258404199 -23789465 - L1ME LINE L1 -721 5449 5398 * 1265 114 11 0 chr1 258404389 258404573 -23789091 + AluSg/x SINE Alu 121 306 -4 2480 243 46 41 chr1 258404580 258405524 -23788140 - L1ME LINE L1 -841 5305 4358 3144 150 27 40 chr1 258406012 258406566 -23787098 - MLT2B3 LTR ERVL -7 547 1 1002 226 11 91 chr1 258406729 258407003 -23786661 - MIR SINE MIR 0 262 11 1078 161 0 0 chr1 258407056 258407230 -23786434 + AluJb SINE Alu 130 303 -9 2283 82 7 3 chr1 258407931 258408236 -23785428 - AluSq SINE Alu -7 306 1 283 356 37 21 chr1 258408236 258408427 -23785237 + L2 LINE L2 2445 2638 -676 872 136 19 26 chr1 258408475 258408629 -23785035 - FRAM SINE Alu -23 153 1 316 311 71 80 chr1 258408631 258408869 -23784795 + L2 LINE L2 2687 2922 -392 404 145 0 13 chr1 258408933 258409009 -23784655 + (CA)n Simple_repeat Simple_repeat 2 76 0 287 75 50 0 chr1 258409023 258409063 -23784601 - MER57A LTR ERV1 -67 336 295 708 191 70 201 chr1 258409064 258409508 -23784156 - L2 LINE L2 -10 3303 2918 308 333 123 6 chr1 258410594 258410756 -23782908 - MIR3 SINE MIR -18 190 10 496 239 73 131 chr1 258410808 258411122 -23782542 + Charlie8 DNA MER1_type 72 367 -2050 1024 82 0 0 chr1 258411125 258411259 -23782405 - AluSg/x SINE Alu -15 295 162 305 65 0 0 chr1 258411397 258411443 -23782221 + Alu SINE Alu 257 302 0 2130 96 3 3 chr1 258411480 258411771 -23781893 + AluSx SINE Alu 1 291 -21 222 128 64 0 chr1 258411772 258411819 -23781845 + (TA)n Simple_repeat Simple_repeat 1 50 0 1470 161 0 55 chr1 258411819 258412129 -23781535 - AluJb SINE Alu -19 293 1 858 176 0 45 chr1 258412268 258412444 -23781220 - FAM SINE Alu -8 41 1 2445 104 25 3 chr1 258413592 258413949 -23779715 - MER47A DNA MER2_type -1 365 1 1826 161 0 10 chr1 258415042 258415352 -23778312 - AluJb SINE Alu -5 307 1 387 0 0 0 chr1 258415917 258415960 -23777704 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr1 258416153 258416175 -23777489 + (T)n Simple_repeat Simple_repeat 1 22 0 353 273 147 20 chr1 258417849 258418047 -23775617 + MLT1J LTR MaLR 287 509 -2 1561 172 10 49 chr1 258418523 258418831 -23774833 - AluJb SINE Alu -14 298 3 773 189 18 18 chr1 258418858 258418876 -23774788 - L1MA10 LINE L1 -1 6333 6316 2023 211 66 28 chr1 258418876 258419406 -23774258 - L1ME1 LINE L1 -10 6156 5607 836 190 0 73 chr1 258419406 258419585 -23774079 - FRAM SINE Alu 0 166 1 2132 136 0 0 chr1 258419642 258419944 -23773720 - AluSx SINE Alu -10 302 1 1773 133 39 42 chr1 258420272 258420632 -23773032 - L1MB8 LINE L1 -6 6172 5814 1532 127 23 95 chr1 258420632 258420976 -23772688 - L1MC1 LINE L1 0 6333 6013 21 36 0 0 chr1 258421132 258421160 -23772504 + AT_rich Low_complexity Low_complexity 1 28 0 2262 90 3 3 chr1 258421204 258421493 -23772171 - AluSx SINE Alu -15 297 9 198 0 0 0 chr1 258422658 258422680 -23770984 + (GGGA)n Simple_repeat Simple_repeat 1 22 0 246 298 0 32 chr1 258423645 258423739 -23769925 + MIR SINE MIR 100 190 -72 222 37 0 0 chr1 258424151 258424178 -23769486 + (TCCCC)n Simple_repeat Simple_repeat 3 29 0 623 282 59 10 chr1 258424322 258424524 -23769140 + MIR SINE MIR 34 245 -17 489 110 0 0 chr1 258424615 258424688 -23768976 + (TCCC)n Simple_repeat Simple_repeat 4 76 0 1377 148 43 0 chr1 258424736 258424945 -23768719 + AluJb SINE Alu 87 304 -8 549 288 78 36 chr1 258425107 258425326 -23768338 - MIR SINE MIR -6 256 29 219 232 0 0 chr1 258425874 258425930 -23767734 + (CA)n Simple_repeat Simple_repeat 2 57 0 1978 139 14 7 chr1 258426496 258426790 -23766874 - AluJb SINE Alu -16 296 1 992 191 38 25 chr1 258426893 258427129 -23766535 + MIR SINE MIR 14 252 -10 2029 133 0 4 chr1 258428666 258428945 -23764719 + AluSx SINE Alu 1 278 -34 192 254 0 0 chr1 258428945 258429004 -23764660 + GA-rich Low_complexity Low_complexity 3 61 0 212 272 37 12 chr1 258429225 258429306 -23764358 + L2 LINE L2 2673 2755 -559 948 142 0 43 chr1 258430090 258430252 -23763412 + FRAM SINE Alu 22 176 0 257 326 11 11 chr1 258430843 258430938 -23762726 + MIR SINE MIR 48 142 -66 1659 197 14 0 chr1 258431200 258431490 -23762174 + AluJo SINE Alu 1 294 -18 2535 61 3 0 chr1 258431519 258431815 -23761849 + AluSp SINE Alu 1 297 -16 1704 181 14 0 chr1 258431831 258432124 -23761540 + AluJo SINE Alu 5 301 -11 203 293 198 6 chr1 258432496 258432653 -23761011 + MIR SINE MIR 23 209 -53 1623 151 46 28 chr1 258432792 258432966 -23760698 - AluJb SINE Alu -22 290 108 207 69 0 0 chr1 258432966 258432995 -23760669 + (TGGGGG)n Simple_repeat Simple_repeat 1 29 0 1623 151 46 28 chr1 258432995 258433105 -23760559 - AluJb SINE Alu -204 108 1 180 0 0 0 chr1 258433682 258433702 -23759962 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 306 167 158 44 chr1 258434012 258434126 -23759538 + MER113 DNA MER1_type? 44 170 -351 1937 157 7 3 chr1 258434174 258434479 -23759185 + AluJb SINE Alu 1 306 -6 204 259 106 12 chr1 258434526 258434611 -23759053 - MIR SINE MIR -58 150 58 507 254 45 28 chr1 258434829 258435006 -23758658 - Charlie7 DNA MER1_type -18 2594 2415 * 1564 245 111 25 chr1 258434996 258435609 -23758055 - Charlie7 DNA MER1_type -1889 723 58 2452 85 3 0 chr1 258435662 258435967 -23757697 + AluSc SINE Alu 3 308 -1 250 303 66 0 chr1 258436071 258436147 -23757517 + L2 LINE L2 3146 3226 -46 2183 103 26 0 chr1 258437113 258437424 -23756240 - L1PB1 LINE L1 -5 6146 5828 1596 139 48 30 chr1 258437948 258438243 -23755421 - AluJo SINE Alu 0 312 13 217 365 48 8 chr1 258438357 258438483 -23755181 - MIR SINE MIR -62 146 16 666 263 40 36 chr1 258438495 258438746 -23754918 + MIR SINE MIR 11 262 0 866 121 0 0 chr1 258438755 258438879 -23754785 - THE1B LTR MaLR -1 363 240 * 1235 133 180 43 chr1 258438876 258439132 -23754532 + MLT2B1 LTR ERVL 180 470 -50 313 219 38 60 chr1 258439163 258439346 -23754318 + (TA)n Simple_repeat Simple_repeat 2 180 0 278 154 0 92 chr1 258439369 258439434 -23754230 + MLT2B1 LTR ERVL 461 519 -1 * 1117 160 15 5 chr1 258439434 258439624 -23754040 - MER3 DNA MER1_type -16 193 2 228 91 0 0 chr1 258439831 258439864 -23753800 + LTR24B LTR ERV1 12 44 -532 1369 121 5 5 chr1 258439910 258440117 -23753547 + LTR24B LTR ERV1 363 569 -7 374 161 0 81 chr1 258440144 258440231 -23753433 - MER116 DNA Mariner 0 80 1 336 228 156 54 chr1 258440465 258440689 -23752975 - MLT1J LTR MaLR -21 490 244 554 270 63 100 chr1 258441142 258441461 -23752203 + MLT1K LTR MaLR 216 522 -66 2453 261 55 37 chr1 258442088 258442577 -23751087 + L1ME3A LINE L1 5191 5670 -500 1801 170 0 17 chr1 258442577 258442877 -23750787 + AluJo SINE Alu 1 295 -17 2453 261 55 37 chr1 258442877 258443350 -23750314 + L1ME3A LINE L1 5670 6170 0 828 307 73 34 chr1 258444446 258444830 -23748834 + MLT1K LTR MaLR 180 578 -10 1378 193 43 30 chr1 258445849 258446150 -23747514 + MLT1A1 LTR MaLR 3 307 -58 22 0 0 0 chr1 258446174 258446196 -23747468 + AT_rich Low_complexity Low_complexity 1 22 0 554 48 0 72 chr1 258446252 258446313 -23747351 + MLT1A1 LTR MaLR 289 344 -21 2130 149 83 5 chr1 258446313 258446710 -23746954 - MSTA LTR MaLR 0 428 1 554 48 0 72 chr1 258446710 258446731 -23746933 + MLT1A1 LTR MaLR 344 365 0 230 231 112 59 chr1 258447216 258447343 -23746321 + L1ME4a LINE L1 5787 5927 -194 616 136 85 0 chr1 258447343 258447461 -23746203 + L1MA5A LINE L1 6165 6292 -5 230 231 112 59 chr1 258447461 258447502 -23746162 + L1ME4a LINE L1 5927 5964 -157 1789 182 0 7 chr1 258447605 258447907 -23745757 + AluJo SINE Alu 1 300 -12 189 74 0 0 chr1 258447933 258447960 -23745704 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1308 221 18 11 chr1 258447964 258448244 -23745420 - AluJo SINE Alu -30 282 1 258 255 128 10 chr1 258448253 258448355 -23745309 + L1ME4a LINE L1 5995 6108 -13 297 252 154 8 chr1 258450086 258450209 -23743455 - MIR SINE MIR -72 190 50 2311 106 0 0 chr1 258450214 258450516 -23743148 - AluSc SINE Alu 0 309 8 486 273 9 0 chr1 258450801 258450911 -23742753 - L2 LINE L2 -1 3271 3161 287 331 121 21 chr1 258451072 258451353 -23742311 - L2 LINE L2 -337 2977 2669 359 243 63 110 chr1 258451523 258451823 -23741841 - L2 LINE L2 0 3313 3028 858 214 140 48 chr1 258451862 258452240 -23741424 - L2 LINE L2 -399 2915 2503 315 253 77 0 chr1 258452475 258452566 -23741098 - MIR SINE MIR -64 198 101 836 171 146 40 chr1 258452832 258453031 -23740633 + AluJo SINE Alu 81 300 -12 1678 203 44 69 chr1 258453073 258453508 -23740156 - MLT1C LTR MaLR 0 467 44 2065 148 0 0 chr1 258453508 258453813 -23739851 + AluJb SINE Alu 1 305 -7 1678 203 44 69 chr1 258453813 258453856 -23739808 - MLT1C LTR MaLR -423 44 1 1352 209 75 55 chr1 258454644 258455098 -23738566 + MLT1C LTR MaLR 1 463 -4 1109 255 68 30 chr1 258455277 258455705 -23737959 - LTR33 LTR ERVL -39 482 39 2497 82 3 0 chr1 258455910 258456216 -23737448 - AluSp SINE Alu -6 307 1 220 273 0 0 chr1 258456539 258456594 -23737070 + MIR SINE MIR 148 202 -60 4331 87 6 88 chr1 258456613 258457337 -23736327 + MER4A LTR ERV1 1 664 0 2200 107 14 7 chr1 258457583 258457874 -23735790 - AluSx SINE Alu -19 293 1 210 250 0 0 chr1 258458241 258458289 -23735375 + CT-rich Low_complexity Low_complexity 1 48 0 1599 157 16 49 chr1 258458289 258458594 -23735070 - AluJo SINE Alu -17 295 1 282 250 115 45 chr1 258459453 258459653 -23734011 + L2 LINE L2 3100 3313 0 392 254 34 8 chr1 258462183 258462301 -23731363 - LTR67 LTR ERVL -10 547 427 229 329 12 12 chr1 258462383 258462468 -23731196 + L2 LINE L2 2646 2730 -584 1171 256 55 118 chr1 258462468 258463233 -23730431 + MER21B LTR ERV1 3 719 -144 526 336 46 4 chr1 258463239 258463477 -23730187 + L2 LINE L2 2730 2977 -337 442 281 87 5 chr1 258464098 258464294 -23729370 - LTR33A LTR ERVL -13 510 299 236 368 0 0 chr1 258464372 258464448 -23729216 + (CTA)n Simple_repeat Simple_repeat 1 76 0 325 216 171 0 chr1 258464464 258464552 -23729112 - LTR33A LTR ERVL -361 162 60 256 306 137 8 chr1 258464775 258464899 -23728765 + L2 LINE L2 3132 3271 -1 1998 123 84 8 chr1 258465440 258465799 -23727865 - MLT1B LTR MaLR -4 386 1 1360 184 267 3 chr1 258466838 258467572 -23726092 + SATR1 Satellite Satellite 1 927 -1 1361 225 208 39 chr1 258467608 258468689 -23724975 + SATR1 Satellite Satellite 1 1263 -96 282 199 218 19 chr1 258468999 258469155 -23724509 + SATR1 Satellite Satellite 188 374 -96 2556 21 3 3 chr1 258470323 258470610 -23723054 - L1PA4 LINE L1 0 6155 5869 3926 41 8 8 chr1 258470610 258471095 -23722569 + L1PA4 LINE L1 5412 5896 -259 1854 172 193 40 chr1 258471280 258472551 -23721113 - SATR1 Satellite Satellite -1 1465 1 210 37 0 0 chr1 258473014 258473041 -23720623 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 861 213 76 22 chr1 258473553 258473613 -23720051 - MIR SINE MIR -3 259 204 1871 117 20 149 chr1 258473613 258473789 -23719875 - MER2 DNA MER2_type 0 344 246 1700 183 10 19 chr1 258473789 258474101 -23719563 - AluJb SINE Alu -3 309 1 1871 117 20 149 chr1 258474101 258474319 -23719345 - MER2 DNA MER2_type -98 246 1 861 213 76 22 chr1 258474319 258474483 -23719181 - MIR SINE MIR -58 204 23 498 230 72 0 chr1 258475475 258475608 -23718056 + MIR SINE MIR 25 169 -64 2411 139 9 9 chr1 258475714 258476051 -23717613 - MER1B DNA MER1_type 0 337 1 1829 157 3 23 chr1 258476262 258476562 -23717102 - AluJo SINE Alu -18 294 1 2021 126 32 0 chr1 258476686 258476971 -23716693 - AluSx SINE Alu -18 294 1 472 287 47 13 chr1 258477079 258477229 -23716435 - MIR SINE MIR -58 204 50 1087 239 57 62 chr1 258477229 258477635 -23716029 - MLT1H LTR MaLR -39 510 107 792 152 44 38 chr1 258477663 258477821 -23715843 + MER97c DNA MER1_type? 21 179 -911 371 238 0 40 chr1 258477871 258477972 -23715692 - MLT1H LTR MaLR -482 113 17 1542 173 0 29 chr1 258478604 258478876 -23714788 - AluJo SINE Alu -37 275 12 288 279 122 41 chr1 258478923 258479095 -23714569 - L1ME3A LINE L1 -16 6154 5969 1584 255 96 47 chr1 258479172 258479616 -23714048 - L1ME3A LINE L1 -219 5951 5531 3737 118 39 0 chr1 258479616 258480123 -23713541 + MER1A DNA MER1_type 1 527 0 1584 255 96 47 chr1 258480123 258480685 -23712979 - L1ME3A LINE L1 -639 5531 4883 828 334 51 3 chr1 258480694 258481044 -23712620 + LTR16B LTR ERVL 98 464 0 1708 173 39 24 chr1 258481742 258482078 -23711586 + MSTB LTR MaLR 1 341 -85 235 176 235 0 chr1 258482053 258482104 -23711560 - MER1A DNA MER1_type -464 63 1 * 607 256 88 60 chr1 258482104 258482389 -23711275 + L1ME LINE L1 5473 5765 -405 865 82 0 0 chr1 258482391 258482501 -23711163 + MSTB1 LTR MaLR 323 432 0 342 0 0 0 chr1 258482675 258482713 -23710951 + (TG)n Simple_repeat Simple_repeat 2 39 0 180 238 24 24 chr1 258483433 258483475 -23710189 - L2 LINE L2 -10 3262 3221 244 290 126 97 chr1 258484698 258485112 -23708552 + L2 LINE L2 2847 3272 0 7448 62 0 0 chr1 258485587 258486673 -23706991 - L1PA7 LINE L1 0 6154 5064 364 48 306 16 chr1 258486756 258486818 -23706846 - MADE1 DNA Mariner 0 80 1 2217 90 0 0 chr1 258487224 258487530 -23706134 + AluSc SINE Alu 1 306 0 181 270 0 32 chr1 258487561 258487624 -23706040 - MIR SINE MIR -19 243 183 1830 176 10 0 chr1 258487689 258487984 -23705680 + AluJo SINE Alu 1 298 -14 2329 86 17 0 chr1 258488090 258488382 -23705282 - AluSp SINE Alu -16 297 1 1259 281 63 67 chr1 258488444 258488999 -23704665 - L1ME3A LINE L1 -219 5951 5395 2205 111 3 0 chr1 258488999 258489297 -23704367 - AluSx SINE Alu -12 300 2 1259 281 63 67 chr1 258489297 258489386 -23704278 - L1ME3A LINE L1 -775 5395 5307 2524 116 17 0 chr1 258489386 258489732 -23703932 - L1PA16 LINE L1 -9 6157 5806 1259 281 63 67 chr1 258489732 258490402 -23703262 - L1ME3A LINE L1 -863 5307 4642 3928 149 4 38 chr1 258490431 258490657 -23703007 + MER54A LTR ERVL 15 247 -654 2451 82 0 0 chr1 258490657 258490960 -23702704 + AluSx SINE Alu 1 303 -9 3928 149 4 38 chr1 258490960 258491448 -23702216 + MER54A LTR ERVL 247 897 -4 2180 138 0 0 chr1 258491448 258491752 -23701912 + AluSx SINE Alu 1 304 -8 1036 177 49 58 chr1 258491827 258492070 -23701594 - L1 LINE L1 -1494 4652 4412 310 161 0 0 chr1 258492073 258492129 -23701535 - Alu SINE Alu -2 300 245 429 250 8 0 chr1 258492129 258492257 -23701407 + L1M4 LINE L1 3371 3499 -2647 * 622 265 0 48 chr1 258492251 258492523 -23701141 - L1 LINE L1 -2766 3380 3122 748 157 9 0 chr1 258493156 258493264 -23700400 - FLAM_C SINE Alu -21 122 14 203 346 0 26 chr1 258495038 258495116 -23698548 + MIR SINE MIR 48 123 -139 704 207 117 59 chr1 258495530 258495786 -23697878 - HAL1 LINE L1 -13 2494 2224 675 178 7 15 chr1 258495790 258495925 -23697739 - HAL1 LINE L1 -338 2169 2036 4669 145 18 21 chr1 258495991 258497388 -23696276 + L1PB2 LINE L1 4699 6149 -2 2301 231 107 62 chr1 258497478 258498769 -23694895 - HAL1 LINE L1 -486 2021 485 2310 164 66 10 chr1 258498769 258499178 -23694486 + MSTB1 LTR MaLR 1 432 0 2301 231 107 62 chr1 258499178 258499526 -23694138 - HAL1 LINE L1 -2022 485 154 1486 176 113 84 chr1 258499534 258499781 -23693883 - MER4C LTR ERV1 0 465 343 1834 97 78 4 chr1 258499781 258500038 -23693626 + AluSc SINE Alu 21 296 -13 1486 176 113 84 chr1 258500038 258500392 -23693272 - MER4C LTR ERV1 -122 343 1 241 258 106 23 chr1 258500395 258500527 -23693137 - HAL1 LINE L1 -2361 146 4 370 279 26 42 chr1 258502818 258502969 -23690695 - MER5A DNA MER1_type -1 188 29 240 311 66 66 chr1 258504323 258504506 -23689158 + L2 LINE L2 2867 3049 -223 294 264 103 0 chr1 258504514 258504601 -23689063 - L2 LINE L2 -3 3269 3174 1861 158 6 37 chr1 258504682 258505004 -23688660 - AluJo SINE Alu 0 312 1 2408 116 73 14 chr1 258505412 258505756 -23687908 - THE1B LTR MaLR 0 364 1 1702 171 88 46 chr1 258505844 258506278 -23687386 + MLT1C LTR MaLR 7 458 -9 1885 146 7 19 chr1 258506872 258507181 -23686483 + AluJo SINE Alu 1 305 -7 242 297 19 123 chr1 258507337 258507492 -23686172 + L2 LINE L2 3133 3271 -1 2103 126 0 0 chr1 258509099 258509385 -23684279 - AluSg SINE Alu -19 291 6 272 203 13 76 chr1 258509386 258509465 -23684199 + L2 LINE L2 3240 3313 0 1906 168 131 6 chr1 258509635 258509986 -23683678 - MSTD LTR MaLR 0 396 2 440 234 36 18 chr1 258510529 258510640 -23683024 + MIR SINE MIR 9 121 -141 505 282 136 23 chr1 258510956 258511176 -23682488 + MIR SINE MIR 16 260 -2 452 117 13 0 chr1 258511317 258511394 -23682270 + (TG)n Simple_repeat Simple_repeat 1 78 0 1132 139 6 17 chr1 258512356 258512536 -23681128 - AluJb SINE Alu 0 312 135 287 197 2 0 chr1 258512649 258512707 -23680957 - MIR SINE MIR -86 122 64 825 116 41 14 chr1 258512763 258512909 -23680755 + L1MA5A LINE L1 6144 6293 -4 1277 126 55 0 chr1 258513193 258513392 -23680272 + L1MB3 LINE L1 5974 6183 0 1081 240 37 34 chr1 258513702 258514109 -23679555 - MER74B LTR ERVL -74 548 70 10020 118 45 2 chr1 258514112 258514292 -23679372 + Tigger1 DNA MER2_type 2 173 -2245 1556 193 7 0 chr1 258514292 258514561 -23679103 - AluJo SINE Alu -41 271 1 10020 118 45 2 chr1 258514561 258515857 -23677807 + Tigger1 DNA MER2_type 173 1542 -876 312 177 39 0 chr1 258515862 258515927 -23677737 + MER21A LTR ERV1 16 83 -780 2904 164 28 157 chr1 258516022 258516086 -23677578 + MER21A LTR ERV1 72 143 -788 2120 109 3 0 chr1 258516086 258516421 -23677243 + AluSq SINE Alu 1 336 0 2904 164 28 157 chr1 258516421 258517236 -23676428 + MER21A LTR ERV1 143 839 -92 6180 105 21 2 chr1 258517287 258518151 -23675513 + Tigger1 DNA MER2_type 1539 2418 0 388 248 97 73 chr1 258518350 258518556 -23675108 - MLT1G1 LTR MaLR -42 553 303 32 81 0 0 chr1 258518725 258518799 -23674865 + AT_rich Low_complexity Low_complexity 1 74 0 2363 93 0 7 chr1 258519406 258519707 -23673957 - AluSp SINE Alu -14 299 1 1076 126 0 40 chr1 258519717 258519891 -23673773 - FAM SINE Alu -8 167 1 789 233 42 54 chr1 258519908 258520148 -23673516 + MLT1B LTR MaLR 3 239 -151 4104 137 37 14 chr1 258520156 258520851 -23672813 - MER50 LTR ERV1 -23 711 1 626 233 0 7 chr1 258520853 258520999 -23672665 + MLT1B LTR MaLR 246 390 0 3593 112 9 16 chr1 258521754 258522118 -23671546 - MER34B LTR ERV1 -5 560 200 2910 101 24 34 chr1 258522118 258522585 -23671079 - MER4C LTR ERV1 -3 462 1 3593 112 9 16 chr1 258522585 258522784 -23670880 - MER34B LTR ERV1 -365 200 1 22 35 0 0 chr1 258522893 258522922 -23670742 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr1 258523391 258523421 -23670243 + AT_rich Low_complexity Low_complexity 1 30 0 3142 177 42 29 chr1 258523897 258524523 -23669141 - LTR27 LTR ERV1 0 636 3 3401 124 84 50 chr1 258524523 258525157 -23668507 + LTR8A LTR ERV1 3 665 -62 2571 213 105 61 chr1 258525157 258525946 -23667718 - LTR1B LTR ERV1 0 826 3 3401 124 84 50 chr1 258525946 258526012 -23667652 + LTR8A LTR ERV1 665 727 0 801 184 24 12 chr1 258526448 258526616 -23667048 - MER4C LTR ERV1 -19 446 277 1360 142 40 117 chr1 258526630 258527133 -23666531 - MER4A LTR ERV1 -241 423 1 1534 186 13 23 chr1 258527201 258527508 -23666156 - MER50 LTR ERV1 0 734 431 1999 182 68 25 chr1 258527508 258527948 -23665716 - LTR2B LTR ERV1 0 490 32 2429 133 49 16 chr1 258527955 258528382 -23665282 - MER50 LTR ERV1 -293 441 1 2295 138 17 3 chr1 258529135 258529496 -23664168 + MER47A DNA MER2_type 1 366 0 1941 129 59 48 chr1 258529496 258529867 -23663797 + THE1C LTR MaLR 1 375 0 279 188 24 59 chr1 258530275 258530360 -23663304 + MLT1J LTR MaLR 96 177 -334 253 350 10 0 chr1 258530421 258530518 -23663146 + MLT1J LTR MaLR 313 410 -101 654 279 11 30 chr1 258530560 258530829 -23662835 - MLT1J LTR MaLR -1 510 247 230 309 57 32 chr1 258531331 258531454 -23662210 + L1ME LINE L1 51 176 -5943 460 366 50 39 chr1 258531781 258532142 -23661522 + L1ME LINE L1 520 884 -5235 1854 158 3 25 chr1 258532200 258532516 -23661148 - AluJb SINE Alu -3 309 1 864 204 17 33 chr1 258532596 258532722 -23660942 + MER45A DNA AcHobo 1 125 -1456 2388 143 53 19 chr1 258532722 258533094 -23660570 + MSTB LTR MaLR 1 390 -36 2000 166 0 3 chr1 258533094 258533395 -23660269 - AluJb SINE Alu -12 300 1 2388 143 53 19 chr1 258533395 258533434 -23660230 + MSTB LTR MaLR 390 426 0 864 204 17 33 chr1 258533434 258533488 -23660176 + MER45A DNA AcHobo 125 178 0 1325 158 147 15 chr1 258533607 258533872 -23659792 + AluJo SINE Alu 1 300 -2 2261 63 26 0 chr1 258533882 258534152 -23659512 + AluSc SINE Alu 1 277 -32 402 21 0 0 chr1 258534152 258534199 -23659465 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 258 230 71 79 chr1 258534235 258534361 -23659303 + MIR SINE MIR 16 140 -68 346 281 151 0 chr1 258534663 258534809 -23658855 - MIR SINE MIR 0 262 95 234 91 0 0 chr1 258535543 258535576 -23658088 + (CGG)n Simple_repeat Simple_repeat 2 34 0 257 344 32 0 chr1 258537834 258537927 -23655737 + MIR3 SINE MIR 109 204 -4 339 260 27 96 chr1 258539481 258539627 -23654037 - MIR SINE MIR -65 143 8 234 140 20 0 chr1 258539804 258539854 -23653810 - L1ME4a LINE L1 -6 6115 6065 982 124 0 0 chr1 258539933 258540062 -23653602 + FLAM_C SINE Alu 1 129 -4 463 259 37 19 chr1 258540863 258540971 -23652693 + L2 LINE L2 3200 3309 -4 2690 107 0 11 chr1 258541012 258541378 -23652286 + THE1B LTR MaLR 1 362 -2 226 328 156 41 chr1 258542720 258543034 -23650630 + L2 LINE L2 1283 1632 -1682 375 277 240 33 chr1 258544093 258544364 -23649300 + L2 LINE L2 2944 3270 -2 2320 74 0 24 chr1 258544485 258544783 -23648881 + AluY SINE Alu 3 293 -18 2426 81 3 0 chr1 258546441 258546739 -23646925 - AluSg SINE Alu -11 299 1 2167 142 19 8 chr1 258547484 258547858 -23645806 - L1MB3 LINE L1 -9 6174 5797 1499 111 12 32 chr1 258547858 258548110 -23645554 + MER4B LTR ERV1 1 247 -363 * 1643 91 3 117 chr1 258548108 258548219 -23645445 + MER4E LTR ERV1 494 616 -150 2267 92 0 33 chr1 258548219 258548522 -23645142 - AluSg SINE Alu -17 293 1 1643 91 3 117 chr1 258548522 258548718 -23644946 + MER4E LTR ERV1 616 766 0 910 195 44 15 chr1 258548719 258548924 -23644740 - L1MB3 LINE L1 -384 5799 5589 1923 108 0 15 chr1 258550120 258550399 -23643265 + AluSg SINE Alu 27 301 0 267 284 11 21 chr1 258550692 258550787 -23642877 + CT-rich Low_complexity Low_complexity 2 95 0 312 310 18 26 chr1 258552144 258552257 -23641407 + MIR3 SINE MIR 90 201 -7 2025 147 0 0 chr1 258552374 258552673 -23640991 - AluJb SINE Alu -12 300 2 2161 95 44 14 chr1 258553517 258553812 -23639852 + AluSg SINE Alu 1 304 -6 2014 119 54 43 chr1 258554201 258554572 -23639092 - THE1C LTR MaLR 0 375 1 1482 192 7 43 chr1 258554913 258555215 -23638449 - AluJo SINE Alu -8 304 14 476 341 34 6 chr1 258555508 258555687 -23637977 - MIR3 SINE MIR -1 207 24 241 78 47 31 chr1 258556089 258556153 -23637511 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2436 80 0 10 chr1 258556165 258556467 -23637197 - AluSg SINE Alu -10 300 2 233 242 71 40 chr1 258557701 258557800 -23635864 + MIR SINE MIR 47 148 -60 4258 138 13 58 chr1 258558590 258559382 -23634282 + LTR39 LTR ERV1 19 774 -9 194 313 104 9 chr1 258559442 258559557 -23634107 + MIR3 SINE MIR 60 185 -23 255 340 19 19 chr1 258561158 258561261 -23632403 - MER5A DNA MER1_type 0 189 87 555 254 212 37 chr1 258561352 258561450 -23632214 - MIR SINE MIR 0 262 182 1781 174 7 7 chr1 258561450 258561744 -23631920 - AluJo SINE Alu -18 294 1 555 254 212 37 chr1 258561744 258561862 -23631802 - MIR SINE MIR -80 182 8 21 0 0 0 chr1 258561922 258561943 -23631721 + AT_rich Low_complexity Low_complexity 1 21 0 2124 159 18 9 chr1 258562793 258563133 -23630531 - MER61A LTR ERV1 0 343 1 294 303 25 41 chr1 258563259 258563381 -23630283 + L2 LINE L2 3146 3265 -7 1326 136 0 0 chr1 258563420 258563611 -23630053 - AluJb SINE Alu -7 305 115 182 283 0 0 chr1 258563679 258563725 -23629939 + MIR3 SINE MIR 146 191 -17 1028 207 44 119 chr1 258565498 258565611 -23628053 - LTR56 LTR ERV1 0 445 325 2018 165 0 0 chr1 258565611 258565920 -23627744 - AluJo SINE Alu -3 309 1 1028 207 44 119 chr1 258565920 258566199 -23627465 - LTR56 LTR ERV1 -120 325 87 1930 161 13 0 chr1 258566199 258566497 -23627167 - AluSx SINE Alu -10 302 1 1028 207 44 119 chr1 258566497 258566538 -23627126 - LTR56 LTR ERV1 -358 87 44 2318 93 3 37 chr1 258567398 258567720 -23625944 + AluSx SINE Alu 1 311 -1 180 278 130 0 chr1 258567789 258567843 -23625821 - L2 LINE L2 -2 3270 3210 1992 155 143 25 chr1 258568338 258568784 -23624880 + MLT1D LTR MaLR 6 504 -1 271 284 15 0 chr1 258568789 258568856 -23624808 + L2 LINE L2 3201 3268 -4 216 67 0 0 chr1 258570345 258570375 -23623289 + (CA)n Simple_repeat Simple_repeat 2 31 0 541 293 110 24 chr1 258570893 258571386 -23622278 - L1MC4a LINE L1 -312 5809 5354 21 0 0 0 chr1 258572337 258572358 -23621306 + AT_rich Low_complexity Low_complexity 1 21 0 2340 84 3 0 chr1 258572432 258572719 -23620945 + AluSq SINE Alu 12 299 -14 1722 175 3 7 chr1 258573078 258573375 -23620289 + AluJb SINE Alu 1 296 -16 2216 104 3 3 chr1 258573380 258573679 -23619985 + AluSx SINE Alu 1 299 -13 1656 246 78 8 chr1 258574235 258574722 -23618942 - LTR33 LTR ERVL 0 521 1 1979 200 78 18 chr1 258574936 258575371 -23618293 - LOR1b LTR ERV1 0 461 1 6703 107 136 68 chr1 258575375 258576633 -23617031 - LOR1b-int LTR ERV1 -2 8118 6776 9671 126 51 51 chr1 258576638 258576690 -23616974 - LOR1-int LTR ERV1 -2109 4489 4439 225 0 0 0 chr1 258576690 258576715 -23616949 + (GA)n Simple_repeat Simple_repeat 2 26 0 9671 126 51 51 chr1 258576715 258577447 -23616217 - LOR1-int LTR ERV1 -2159 4439 3709 1772 163 13 17 chr1 258577447 258577747 -23615917 - AluJb SINE Alu -13 299 1 9671 126 51 51 chr1 258577747 258579282 -23614382 - LOR1-int LTR ERV1 -2889 3709 2349 1120 42 36 36 chr1 258579292 258579385 -23614279 - LOR1-int LTR ERV1 -6254 1866 1771 1946 129 121 24 chr1 258579385 258579717 -23613947 - THE1B LTR MaLR 0 364 1 1120 42 36 36 chr1 258579717 258579791 -23613873 - LOR1-int LTR ERV1 -6348 1772 1699 7655 124 64 69 chr1 258581262 258582278 -23611386 - LOR1b-int LTR ERV1 -6420 1700 681 615 89 0 13 chr1 258582278 258582357 -23611307 - MADE1 DNA Mariner -2 78 1 7655 124 64 69 chr1 258582357 258582482 -23611182 - LOR1b-int LTR ERV1 -7439 681 557 272 107 18 107 chr1 258582482 258582538 -23611126 - 5S rRNA rRNA -70 51 1 7655 124 64 69 chr1 258582538 258582850 -23610814 - LOR1b-int LTR ERV1 -7563 557 198 2175 162 36 0 chr1 258582868 258583226 -23610438 - LOR1b-int LTR ERV1 -7749 371 1 2553 158 59 7 chr1 258583226 258583664 -23610000 - LOR1b LTR ERV1 0 461 1 1093 152 0 12 chr1 258584010 258584181 -23609483 - FRAM SINE Alu -9 167 1 414 261 0 0 chr1 258584752 258584840 -23608824 - L2 LINE L2 0 3313 3226 360 279 67 0 chr1 258585379 258585483 -23608181 - MIR SINE MIR -63 145 35 359 209 105 0 chr1 258586322 258586408 -23607256 + L2 LINE L2 3214 3308 -5 428 289 97 33 chr1 258586704 258587094 -23606570 + L1ME LINE L1 5254 5657 -509 402 235 29 20 chr1 258587818 258587920 -23605744 + L2 LINE L2 3209 3311 -2 658 306 14 19 chr1 258589107 258589316 -23604348 - MIR SINE MIR -30 232 25 444 319 40 0 chr1 258589409 258589562 -23604102 - MIR SINE MIR -62 200 42 200 271 17 0 chr1 258589971 258590030 -23603634 + MIR SINE MIR 94 153 -55 1849 209 41 36 chr1 258590228 258590640 -23603024 + MLT2D LTR ERVL 1 414 0 976 237 59 31 chr1 258591784 258592175 -23601489 - MLT1C LTR MaLR 0 467 1 529 297 110 49 chr1 258592769 258593214 -23600450 + L2 LINE L2 2830 3301 -12 315 0 0 0 chr1 258593673 258593708 -23599956 + (T)n Simple_repeat Simple_repeat 1 35 0 578 268 13 0 chr1 258594608 258594765 -23598899 + L1M4 LINE L1 3372 3530 -2616 * 2044 211 26 59 chr1 258594755 258595522 -23598142 + L1MC/D LINE L1 5033 5772 -744 7596 46 12 3 chr1 258595628 258597106 -23596558 + L1PA5 LINE L1 4691 6154 0 1148 141 6 0 chr1 258597626 258597796 -23595868 + AluSg/x SINE Alu 123 293 -19 3864 138 97 117 chr1 258597797 258597893 -23595771 + L1MA7 LINE L1 5308 5404 -887 2059 107 0 37 chr1 258597893 258598193 -23595471 + AluY SINE Alu 20 308 -3 3864 138 97 117 chr1 258598193 258598865 -23594799 + L1MA7 LINE L1 5404 6119 -172 226 200 31 31 chr1 258598865 258598930 -23594734 - MER63 DNA MER1_type -218 843 779 3864 138 97 117 chr1 258598930 258599100 -23594564 + L1MA7 LINE L1 6119 6291 0 3132 223 39 15 chr1 258599135 258599991 -23593673 + L1M4 LINE L1 3562 4437 -1709 765 201 13 0 chr1 258599994 258600153 -23593511 + MLT2B1 LTR ERVL 3 163 -357 791 200 38 22 chr1 258600158 258600343 -23593321 + MSTD LTR MaLR 4 191 -205 1352 182 69 22 chr1 258600344 258600619 -23593045 + AluJo SINE Alu 1 288 -24 2227 92 13 3 chr1 258600619 258600922 -23592742 - L1PA10 LINE L1 -485 5683 5378 * 3522 77 11 0 chr1 258600912 258601365 -23592299 + L1PA10 LINE L1 5690 6147 -21 2039 133 0 3 chr1 258601365 258601658 -23592006 + AluSg SINE Alu 13 304 -6 735 217 5 54 chr1 258601694 258601878 -23591786 + MSTD LTR MaLR 222 396 0 720 231 109 80 chr1 258601878 258602116 -23591548 + MLT2B1 LTR ERVL 161 405 -115 384 40 0 0 chr1 258602121 258602171 -23591493 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 3310 172 26 26 chr1 258602189 258603677 -23589987 - L1 LINE L1 -1747 5818 2168 * 6334 169 11 32 chr1 258603657 258605920 -23587744 - L1PB1 LINE L1 -1 6150 3944 4345 188 7 10 chr1 258605921 258606793 -23586871 + L1 LINE L1 2240 3108 -3038 3469 147 14 5 chr1 258606891 258607448 -23586216 - LTR22 LTR ERVK -18 562 1 3831 194 17 6 chr1 258607450 258608268 -23585396 + L1 LINE L1 3112 3938 -2208 1397 25 13 0 chr1 258608279 258608436 -23585228 - L1PA7 LINE L1 0 6154 5996 613 109 453 0 chr1 258608437 258608574 -23585090 - L1 LINE L1 -5823 1742 1544 9980 156 29 7 chr1 258608575 258610213 -23583451 - L1 LINE L1 -5883 1682 8 5400 127 48 37 chr1 258610221 258610359 -23583305 - L1MA5 LINE L1 -49 6251 6116 1643 178 7 7 chr1 258610359 258610645 -23583019 + AluJo SINE Alu 21 306 -6 5400 127 48 37 chr1 258610645 258611584 -23582080 - L1MA5 LINE L1 -184 6116 5165 591 203 82 50 chr1 258611594 258611776 -23581888 - L1MA10 LINE L1 0 6334 6147 8133 28 0 0 chr1 258611779 258612913 -23580751 - L1PA3 LINE L1 0 6155 5021 * 19309 109 16 6 chr1 258612911 258614796 -23578868 + L1PB2 LINE L1 2509 4441 -1710 225 0 0 0 chr1 258614796 258614821 -23578843 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 19309 109 16 6 chr1 258614821 258616549 -23577115 + L1PB2 LINE L1 4441 6150 -1 419 223 107 0 chr1 258616554 258616675 -23576989 + L1MD3 LINE L1 7861 7994 -1 2015 140 3 0 chr1 258617474 258617766 -23575898 + AluSx SINE Alu 1 293 -19 7203 112 32 22 chr1 258618155 258619215 -23574449 + MER11C LTR ERVK 1 1071 0 886 247 31 28 chr1 258619913 258620168 -23573496 + MLT1H1 LTR MaLR 12 267 -288 341 238 89 10 chr1 258620240 258620341 -23573323 + MLT1G1 LTR MaLR 487 595 0 457 261 18 55 chr1 258620457 258620622 -23573042 - MIR SINE MIR -12 250 92 324 308 100 21 chr1 258620879 258621119 -23572545 - L2 LINE L2 -370 2944 2686 1374 167 50 150 chr1 258622352 258622812 -23570852 - MLT2D LTR ERVL 0 414 1 281 328 45 30 chr1 258623513 258623647 -23570017 + MIR3 SINE MIR 15 150 -58 529 146 12 9 chr1 258623928 258624026 -23569638 + MLT2A2 LTR ERVL 332 514 -40 227 266 89 0 chr1 258624094 258624173 -23569491 + MER112 DNA MER1_type 1 86 -174 4917 188 37 18 chr1 258624261 258624453 -23569211 - L1MB2 LINE L1 -5 6166 5979 1659 157 23 99 chr1 258624453 258624848 -23568816 + MLT1A1 LTR MaLR 1 365 0 4917 188 37 18 chr1 258624848 258626166 -23567498 - L1MB2 LINE L1 -192 5979 4620 5411 71 6 1 chr1 258626166 258626854 -23566810 + L1PA10 LINE L1 5467 6157 -11 4917 188 37 18 chr1 258626854 258627023 -23566641 - L1MB2 LINE L1 -1551 4620 4456 1657 176 84 32 chr1 258627025 258627372 -23566292 - MLT1A1 LTR MaLR 0 365 1 248 230 11 46 chr1 258627375 258627462 -23566202 + MER112 DNA MER1_type 141 224 -36 2149 132 7 0 chr1 258628105 258628401 -23565263 - AluSx SINE Alu -12 300 3 202 273 0 0 chr1 258629441 258629485 -23564179 + GA-rich Low_complexity Low_complexity 1 44 0 2358 99 19 48 chr1 258629622 258629996 -23563668 - THE1B LTR MaLR 0 364 2 295 235 0 92 chr1 258630366 258630389 -23563275 + MIR SINE MIR 54 78 -130 818 221 53 75 chr1 258630389 258630670 -23562994 + ORSL DNA AcHobo 1 275 0 295 235 0 92 chr1 258630670 258630744 -23562920 + MIR SINE MIR 78 142 -66 5350 195 107 85 chr1 258631453 258631835 -23561829 + L1MC4 LINE L1 5725 6097 -1945 1882 158 0 14 chr1 258631835 258632126 -23561538 - AluSx SINE Alu -25 287 1 5350 195 107 85 chr1 258632126 258632750 -23560914 + L1MC4 LINE L1 6097 6706 -1336 1862 140 65 0 chr1 258632750 258633029 -23560635 - AluSx SINE Alu -11 301 5 5350 195 107 85 chr1 258633029 258634205 -23559459 + L1MC4 LINE L1 6706 8040 -2 339 252 70 0 chr1 258634417 258634532 -23559132 - MIR3 SINE MIR -1 207 85 626 233 106 49 chr1 258634872 258635296 -23558368 - MLT1H LTR MaLR -2 547 10 272 340 0 19 chr1 258636068 258636174 -23557490 - MIR SINE MIR -110 152 49 439 302 80 13 chr1 258636462 258636687 -23556977 - MIR SINE MIR -6 256 17 237 299 0 13 chr1 258637233 258637310 -23556354 - L2 LINE L2 -18 3254 3179 504 275 96 29 chr1 258637441 258637681 -23555983 - MER112 DNA MER1_type 0 256 1 1896 167 128 0 chr1 258638202 258638585 -23555079 - MSTB1 LTR MaLR 0 432 1 301 284 80 12 chr1 258638721 258638910 -23554754 + MIR3 SINE MIR 7 205 -57 226 113 65 16 chr1 258638949 258639011 -23554653 + (TAAA)n Simple_repeat Simple_repeat 1 65 0 281 275 0 0 chr1 258639048 258639117 -23554547 + (TAG)n Simple_repeat Simple_repeat 1 69 0 290 274 160 0 chr1 258639253 258639359 -23554305 + L1ME4a LINE L1 5975 6097 -24 270 248 32 0 chr1 258639618 258639706 -23553958 + MIR SINE MIR 70 162 -46 7933 13 8 0 chr1 258640185 258641079 -23552585 - L1PA3 LINE L1 -1 6154 5254 2441 69 0 0 chr1 258641841 258642153 -23551511 + AluY SINE Alu 1 312 0 919 238 132 108 chr1 258642164 258642656 -23551008 - MLT1K LTR MaLR -74 514 11 1847 114 0 134 chr1 258642779 258643130 -23550534 + AluSx SINE Alu 1 304 -8 181 356 44 0 chr1 258643732 258643822 -23549842 - L2 LINE L2 0 3272 3179 14129 140 23 41 chr1 258643945 258645763 -23547901 + L1M1 LINE L1 9 1777 -5788 2018 133 0 4 chr1 258645763 258646042 -23547622 - AluSx SINE Alu -32 280 3 14129 140 23 41 chr1 258646042 258646606 -23547058 + L1M1 LINE L1 1777 2349 -5216 1894 237 99 62 chr1 258648368 258649175 -23544489 + HAL1 LINE L1 1671 2507 0 922 176 11 5 chr1 258649232 258649419 -23544245 - MER53 DNA DNA -1 188 1 2217 107 0 7 chr1 258649557 258649855 -23543809 - AluSx SINE Alu -16 296 1 208 147 0 0 chr1 258650075 258650109 -23543555 + (A)n Simple_repeat Simple_repeat 1 34 0 342 314 140 18 chr1 258650789 258651018 -23542646 + MIR SINE MIR 4 260 -2 572 259 104 16 chr1 258651512 258651705 -23541959 + MLT1J LTR MaLR 1 210 -301 1119 145 69 148 chr1 258651706 258651986 -23541678 + AluJo SINE Alu 1 253 -59 2183 125 41 24 chr1 258651986 258652355 -23541309 - THE1C LTR MaLR 0 375 1 1119 145 69 148 chr1 258652355 258652406 -23541258 + AluJo SINE Alu 253 306 -6 703 246 74 60 chr1 258652417 258652701 -23540963 + MLT1J LTR MaLR 224 511 0 2012 114 75 31 chr1 258653354 258653713 -23539951 - THE1C LTR MaLR 0 375 1 244 207 11 92 chr1 258654022 258654109 -23539555 + MIR SINE MIR 73 152 -110 369 330 44 33 chr1 258655079 258655261 -23538403 - MIR SINE MIR -77 185 2 435 154 23 19 chr1 258655521 258655649 -23538015 - MER58B DNA MER1_type 0 341 171 205 163 47 0 chr1 258656849 258656892 -23536772 + A-rich Low_complexity Low_complexity 2 46 0 387 132 0 0 chr1 258657242 258657310 -23536354 + LOR1a LTR ERV1 238 305 -192 1116 174 190 4 chr1 258657310 258657568 -23536096 + LOR1a LTR ERV1 192 497 0 441 251 35 79 chr1 258658195 258658422 -23535242 - LTR67 LTR ERVL -339 218 2 300 274 150 16 chr1 258658762 258658947 -23534717 + MIR SINE MIR 19 222 -40 365 244 181 25 chr1 258659260 258659420 -23534244 - MIR SINE MIR -6 256 72 703 257 80 112 chr1 258659541 258660031 -23533633 - LTR40a LTR ERVL -42 477 4 278 288 0 72 chr1 258660110 258660235 -23533429 - L2 LINE L2 -1 3271 3156 3573 104 73 42 chr1 258660411 258660963 -23532701 - MER4B LTR ERV1 0 610 37 2312 124 86 5 chr1 258660963 258661359 -23532305 + MSTA LTR MaLR 1 428 0 3573 104 73 42 chr1 258661359 258661394 -23532270 - MER4B LTR ERV1 -573 37 5 377 283 104 69 chr1 258661641 258662133 -23531531 - L1ME4a LINE L1 -2 6119 5611 2444 61 14 0 chr1 258662134 258662431 -23531233 + AluY SINE Alu 1 301 -10 624 188 111 0 chr1 258662441 258662558 -23531106 + FLAM_C SINE Alu 2 131 -12 24 0 0 0 chr1 258662561 258662585 -23531079 + AT_rich Low_complexity Low_complexity 1 24 0 730 233 174 22 chr1 258663155 258663472 -23530192 - L1ME4a LINE L1 -48 6073 5709 278 260 233 0 chr1 258663558 258663708 -23529956 - MIR SINE MIR 0 262 78 224 292 34 22 chr1 258664232 258664321 -23529343 - L2 LINE L2 0 3272 3183 607 341 75 30 chr1 258664708 258665239 -23528425 - L1ME4a LINE L1 -1678 4468 3914 242 250 0 0 chr1 258665881 258665937 -23527727 - L2 LINE L2 -3 3269 3214 2340 228 3 40 chr1 258665938 258666517 -23527147 - MER74A LTR ERVL 0 558 1 691 271 48 45 chr1 258668327 258668495 -23525169 + L2 LINE L2 2464 2635 -679 1910 184 52 50 chr1 258668495 258668999 -23524665 - MLT1D LTR MaLR 0 505 1 691 271 48 45 chr1 258668999 258669121 -23524543 + L2 LINE L2 2635 2755 -559 259 274 128 12 chr1 258669182 258669346 -23524318 - L1ME4a LINE L1 -2302 3844 3662 23 0 0 0 chr1 258670025 258670048 -23523616 + AT_rich Low_complexity Low_complexity 1 23 0 2305 103 3 0 chr1 258671099 258671401 -23522263 - AluSp SINE Alu -10 303 1 585 183 24 16 chr1 258671716 258671842 -23521822 + MER5A DNA MER1_type 1 127 -62 330 318 23 38 chr1 258671882 258672014 -23521650 + MER5B DNA MER1_type 1 130 -48 225 0 0 0 chr1 258672008 258672033 -23521631 + (T)n Simple_repeat Simple_repeat 1 25 0 * 249 233 17 17 chr1 258673580 258673640 -23520024 - MIR SINE MIR -59 149 90 5095 66 8 5 chr1 258675466 258676117 -23517547 + L1PA10 LINE L1 5511 6163 -5 365 268 62 27 chr1 258676119 258676231 -23517433 + MER5A DNA MER1_type 52 167 -22 449 289 124 37 chr1 258676254 258676472 -23517192 + MIR SINE MIR 12 248 -14 2205 95 3 0 chr1 258676698 258676992 -23516672 + AluSp SINE Alu 6 300 -13 503 302 126 39 chr1 258677171 258677654 -23516010 + HERVL LTR ERVL 4729 5253 -401 458 307 22 17 chr1 258677806 258677985 -23515679 + LTR16A LTR ERVL 18 197 -253 1441 119 4 8 chr1 258677986 258678229 -23515435 + L1MA8 LINE L1 6046 6287 -4 228 275 0 0 chr1 258678299 258678379 -23515285 + HAL1 LINE L1 2256 2335 -172 637 253 52 6 chr1 258678576 258678750 -23514914 + LTR16A LTR ERVL 269 450 0 689 261 42 33 chr1 258679238 258679453 -23514211 + MIR SINE MIR 20 236 -26 3806 137 24 3 chr1 258680828 258681419 -23512245 + LTR26 LTR ERV1 1 603 0 707 240 99 26 chr1 258681445 258681678 -23511986 - MIR SINE MIR 0 262 13 193 269 48 153 chr1 258681727 258681976 -23511688 + L2 LINE L2 3015 3237 -35 2049 113 0 49 chr1 258682413 258682739 -23510925 + AluSx SINE Alu 1 310 -2 539 289 144 10 chr1 258682943 258683144 -23510520 + MIR SINE MIR 17 244 -18 1885 144 7 3 chr1 258683178 258683484 -23510180 + AluSx SINE Alu 1 307 -5 1914 123 31 0 chr1 258683753 258684046 -23509618 + AluSc SINE Alu 1 302 -7 397 111 347 0 chr1 258684374 258684446 -23509218 - MER81 DNA DNA -17 97 1 230 310 137 49 chr1 258684528 258684754 -23508910 - L3b LINE CR1 -218 1365 1120 252 0 0 0 chr1 258685504 258685532 -23508132 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr1 258685592 258685613 -23508051 + AT_rich Low_complexity Low_complexity 1 21 0 244 274 253 7 chr1 258686211 258686357 -23507307 + MIR SINE MIR 78 259 -3 321 122 0 20 chr1 258686401 258686450 -23507214 - AluY SINE Alu -113 188 141 626 155 68 0 chr1 258686450 258686553 -23507111 + AluJb SINE Alu 182 291 -21 1536 191 130 6 chr1 258686787 258687211 -23506453 + MLT1F LTR MaLR 1 542 0 1694 118 0 0 chr1 258687710 258687948 -23505716 + AluSg SINE Alu 57 294 -16 204 40 0 0 chr1 258688362 258688387 -23505277 + (TGGA)n Simple_repeat Simple_repeat 4 28 0 185 211 19 0 chr1 258688507 258688559 -23505105 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 1312 0 30 0 chr1 258689548 258689716 -23503948 + (TG)n Simple_repeat Simple_repeat 1 173 0 278 319 69 0 chr1 258689909 258690025 -23503639 + L2 LINE L2 2226 2349 -965 1664 190 49 19 chr1 258690112 258690480 -23503184 - LTR52 LTR ERVL -41 380 2 926 273 8 31 chr1 258690696 258690952 -23502712 + MIR SINE MIR 13 262 0 268 325 71 16 chr1 258690951 258691077 -23502587 + L2 LINE L2 2599 2731 -583 * 225 0 0 0 chr1 258691981 258692006 -23501658 + (A)n Simple_repeat Simple_repeat 1 25 0 453 351 16 22 chr1 258692195 258692380 -23501284 - MIR SINE MIR -57 205 22 219 88 0 0 chr1 258693040 258693074 -23500590 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 203 273 0 45 chr1 258694091 258694157 -23499507 - L3 LINE CR1 -427 1150 1088 464 319 128 16 chr1 258694162 258694419 -23499245 - L3 LINE CR1 -707 870 585 1724 179 64 3 chr1 258695466 258695795 -23497869 + MER63 DNA MER1_type 712 1060 0 2299 85 0 3 chr1 258696135 258696442 -23497222 + AluSx SINE Alu 1 306 -6 465 284 65 12 chr1 258697112 258697281 -23496383 - MIR SINE MIR -7 255 78 642 344 17 9 chr1 258697449 258697679 -23495985 + MIR SINE MIR 31 262 0 2402 162 61 0 chr1 258697881 258698277 -23495387 + MSTB LTR MaLR 1 420 -6 364 310 92 7 chr1 258698316 258698458 -23495206 - MIR SINE MIR -22 240 87 455 258 86 71 chr1 258698710 258698926 -23494738 + MIR SINE MIR 8 229 -33 307 331 35 35 chr1 258698985 258699154 -23494510 + MIR SINE MIR 80 248 -14 1775 155 20 3 chr1 258699312 258699609 -23494055 + AluJb SINE Alu 1 302 -10 225 0 0 0 chr1 258701383 258701408 -23492256 + (A)n Simple_repeat Simple_repeat 1 25 0 229 348 82 54 chr1 258702456 258702640 -23491024 - L2 LINE L2 -38 3234 3046 220 219 302 21 chr1 258702900 258702996 -23490668 + MIR SINE MIR 1 123 -139 306 291 136 10 chr1 258704099 258704202 -23489462 - MER5A DNA MER1_type -19 170 55 312 288 151 49 chr1 258704263 258704284 -23489380 + MIR SINE MIR 6 23 -239 1889 135 17 3 chr1 258704284 258704580 -23489084 + AluJo SINE Alu 3 302 -10 312 288 151 49 chr1 258704580 258704763 -23488901 + MIR SINE MIR 23 231 -31 1368 155 20 57 chr1 258704768 258705065 -23488599 + AluJb SINE Alu 27 312 0 451 249 24 73 chr1 258707403 258707568 -23486096 + MIR SINE MIR 63 219 -43 228 320 39 39 chr1 258707763 258707866 -23485798 - L2 LINE L2 -18 3254 3152 370 306 23 13 chr1 258708078 258708255 -23485409 + MIR SINE MIR 3 180 -67 444 367 86 27 chr1 258708334 258708925 -23484739 + L2 LINE L2 2351 2976 -338 259 356 110 0 chr1 258709010 258709128 -23484536 + L2 LINE L2 3183 3313 0 2861 113 18 20 chr1 258709424 258709882 -23483782 - L1MB7 LINE L1 -16 6168 5712 207 213 16 0 chr1 258711120 258711181 -23482483 + (TA)n Simple_repeat Simple_repeat 1 62 0 2088 124 0 3 chr1 258711273 258711580 -23482084 - AluSx SINE Alu -6 306 1 187 321 0 36 chr1 258711786 258711870 -23481794 + L2 LINE L2 3224 3304 -9 529 329 84 22 chr1 258713171 258713408 -23480256 + MLT1I LTR MaLR 118 376 -33 198 0 0 0 chr1 258713408 258713430 -23480234 + (TTG)n Simple_repeat Simple_repeat 2 23 0 529 329 84 22 chr1 258713430 258713466 -23480198 + MLT1I LTR MaLR 376 408 -1 311 260 146 24 chr1 258713587 258713710 -23479954 + L3 LINE CR1 1434 1571 -6 189 319 0 14 chr1 258715298 258715367 -23478297 + MIR SINE MIR 75 142 -120 2087 118 0 3 chr1 258715452 258715780 -23477884 - AluSg SINE Alu 0 327 1 686 173 30 30 chr1 258716640 258716773 -23476891 - AluJo SINE Alu -177 135 3 633 209 14 27 chr1 258717959 258718107 -23475557 - MER5A DNA MER1_type 0 189 44 638 182 175 0 chr1 258718123 258718277 -23475387 + MER5A DNA MER1_type 9 189 0 525 298 82 6 chr1 258718275 258718446 -23475218 + MER5A DNA MER1_type 4 187 -2 * 222 146 0 49 chr1 258719473 258719514 -23474150 - L2 LINE L2 -3 3310 3272 690 286 22 26 chr1 258720908 258721162 -23472502 + MIR SINE MIR 8 260 -2 203 167 0 0 chr1 258721538 258721574 -23472090 + L2 LINE L2 3217 3252 -20 317 270 0 40 chr1 258721580 258721654 -23472010 - L2 LINE L2 0 3313 3243 1137 265 98 15 chr1 258722014 258722681 -23470983 + L2 LINE L2 2551 3279 -34 1721 179 31 17 chr1 258723209 258723562 -23470102 + MLT1A1 LTR MaLR 1 358 -7 246 304 64 96 chr1 258724250 258724375 -23469289 - L2 LINE L2 -18 3254 3134 480 323 157 34 chr1 258724513 258724784 -23468880 - L2 LINE L2 -694 2620 2384 2232 151 62 26 chr1 258724784 258725201 -23468463 + MSTB1 LTR MaLR 1 432 0 480 323 157 34 chr1 258725201 258725573 -23468091 - L2 LINE L2 -930 2384 1898 2143 133 3 0 chr1 258726593 258726886 -23466778 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr1 258726886 258726908 -23466756 + AT_rich Low_complexity Low_complexity 1 22 0 599 293 90 5 chr1 258727054 258727266 -23466398 - MIR SINE MIR 0 262 33 229 366 116 24 chr1 258728170 258728334 -23465330 - L2 LINE L2 0 3272 3094 347 253 195 39 chr1 258728359 258728513 -23465151 + MER5B DNA MER1_type 1 178 0 2268 131 0 0 chr1 258728887 258729192 -23464472 - AluJb SINE Alu -3 309 5 983 205 0 6 chr1 258729224 258729390 -23464274 + FRAM SINE Alu 1 165 -1 250 344 70 78 chr1 258729658 258729914 -23463750 - L2 LINE L2 -13 3259 3006 320 316 63 0 chr1 258729991 258730086 -23463578 + L2 LINE L2 3169 3269 -3 1593 152 26 64 chr1 258730548 258730891 -23462773 + MER44D DNA MER2_type 10 609 0 413 272 92 75 chr1 258731636 258731864 -23461800 - Charlie8 DNA MER1_type -2173 244 13 438 290 112 37 chr1 258731877 258732305 -23461359 - L2 LINE L2 -1150 2164 1705 242 198 286 11 chr1 258732996 258733087 -23460577 + MER5A DNA MER1_type 51 166 -23 * 426 205 12 0 chr1 258733013 258733096 -23460568 - MER5A DNA MER1_type -80 109 26 2255 128 0 0 chr1 258733453 258733757 -23459907 + AluSx SINE Alu 9 312 0 302 219 144 94 chr1 258733927 258734060 -23459604 + MIR3 SINE MIR 35 179 -29 1588 241 42 14 chr1 258734060 258734488 -23459176 - LTR47B LTR ERVL -2 441 2 302 219 144 94 chr1 258734488 258734514 -23459150 + MIR3 SINE MIR 179 202 -6 411 299 80 77 chr1 258734567 258734969 -23458695 - L2 LINE L2 -5 3267 2865 765 230 135 87 chr1 258735443 258735570 -23458094 + L1MC4 LINE L1 7522 7641 -401 2137 117 10 26 chr1 258735570 258735879 -23457785 - AluSq SINE Alu -7 306 3 765 230 135 87 chr1 258735879 258736247 -23457417 + L1MC4 LINE L1 7641 8041 -1 261 154 39 90 chr1 258736249 258736327 -23457337 + MER5B DNA MER1_type 85 158 -20 981 164 12 6 chr1 258737200 258737371 -23456293 - MER5B DNA MER1_type -6 172 1 379 306 105 8 chr1 258737617 258737741 -23455923 - MER5B DNA MER1_type 0 178 43 528 251 30 42 chr1 258737922 258738089 -23455575 + MER5B DNA MER1_type 8 172 -6 491 267 184 26 chr1 258738212 258738478 -23455186 + L1MC/D LINE L1 5497 5804 -2004 640 238 121 49 chr1 258738843 258739066 -23454598 + MIR SINE MIR 20 258 -4 1790 187 24 7 chr1 258739087 258739457 -23454207 + MLT1A2 LTR MaLR 1 455 -2 768 155 7 28 chr1 258740303 258740445 -23453219 + MLT1B LTR MaLR 1 139 -251 793 199 0 7 chr1 258740449 258740600 -23453064 - LTR32 LTR ERVL -5 466 317 239 204 61 0 chr1 258740600 258740649 -23453015 - LTR32 LTR ERVL -103 368 317 1458 208 24 41 chr1 258740737 258741078 -23452586 - LTR32 LTR ERVL -122 349 15 1199 168 46 0 chr1 258741076 258741314 -23452350 + MLT1B LTR MaLR 131 379 -11 * 181 158 132 0 chr1 258741688 258741726 -23451938 + MIR SINE MIR 49 91 -171 204 40 0 0 chr1 258741832 258741857 -23451807 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 633 239 101 0 chr1 258743313 258743472 -23450192 + MER5B DNA MER1_type 1 175 -3 218 240 40 90 chr1 258743879 258743901 -23449763 + L2 LINE L2 3178 3200 -72 263 28 28 0 chr1 258743901 258743937 -23449727 + (CA)n Simple_repeat Simple_repeat 2 38 0 218 240 40 90 chr1 258743937 258744014 -23449650 + L2 LINE L2 3200 3272 0 601 267 86 44 chr1 258744246 258744704 -23448960 + MLT1J LTR MaLR 1 503 -8 218 253 310 0 chr1 258745119 258745206 -23448458 + MIR SINE MIR 72 185 -77 1764 199 14 62 chr1 258745273 258745314 -23448350 - MLT2D LTR ERVL 0 414 373 342 0 0 0 chr1 258745314 258745352 -23448312 + (TG)n Simple_repeat Simple_repeat 2 39 0 1764 199 14 62 chr1 258745352 258745619 -23448045 - MLT2D LTR ERVL -41 373 130 3559 76 8 18 chr1 258745619 258746108 -23447556 - L1PB2 LINE L1 -3 6148 5665 1764 199 14 62 chr1 258746108 258746230 -23447434 - MLT2D LTR ERVL -284 130 4 294 340 99 19 chr1 258746731 258746893 -23446771 + MER5B DNA MER1_type 2 176 -2 278 290 30 10 chr1 258747047 258747147 -23446517 + MLT1J LTR MaLR 187 288 -261 256 156 22 148 chr1 258747182 258747317 -23446347 + MLT1J LTR MaLR 384 501 -48 772 268 24 9 chr1 258747897 258748110 -23445554 + MIR SINE MIR 5 220 -42 1537 160 27 37 chr1 258748400 258748694 -23444970 - AluJo SINE Alu -21 291 1 290 200 43 14 chr1 258749038 258749108 -23444556 - MLT1H LTR MaLR -16 533 472 357 315 76 20 chr1 258749162 258749413 -23444251 - MLT1H LTR MaLR -237 312 48 523 236 149 0 chr1 258749424 258749572 -23444092 + MER45A DNA AcHobo 9 178 0 260 316 83 72 chr1 258750086 258750212 -23443452 - L3b LINE CR1 -11 1572 1449 2233 126 3 3 chr1 258750212 258750522 -23443142 + AluSx SINE Alu 1 310 -2 260 316 83 72 chr1 258750522 258750756 -23442908 - L3b LINE CR1 -134 1449 1208 389 211 240 40 chr1 258751378 258751553 -23442111 - MIR SINE MIR 0 262 53 2130 72 83 0 chr1 258751770 258752047 -23441617 - AluSq SINE Alu -13 300 1 277 336 36 58 chr1 258752198 258752335 -23441329 - L2 LINE L2 0 3313 3180 1391 239 114 17 chr1 258752537 258753018 -23440646 + LTR26 LTR ERV1 70 597 -6 1807 185 3 3 chr1 258753180 258753477 -23440187 + AluJo SINE Alu 1 297 -15 4502 41 13 0 chr1 258754162 258754701 -23438963 + L1PA5 LINE L1 5606 6151 -3 446 272 172 7 chr1 258757480 258757688 -23435976 + MIR SINE MIR 5 248 -14 427 262 62 7 chr1 258758985 258759130 -23434534 + L1MC5 LINE L1 7757 7909 -52 1391 114 0 0 chr1 258759789 258759965 -23433699 + AluSx SINE Alu 20 195 -117 500 278 40 17 chr1 258760247 258760420 -23433244 - L3 LINE CR1 -79 1498 1322 443 218 0 0 chr1 258760425 258760503 -23433161 + MER58B DNA MER1_type 4 81 -260 1247 142 0 95 chr1 258760509 258760741 -23432923 - AluSg/x SINE Alu 0 312 103 954 175 85 20 chr1 258760742 258760988 -23432676 + MER58B DNA MER1_type 78 339 -2 666 204 89 21 chr1 258761021 258761212 -23432452 - MER3 DNA MER1_type -5 204 1 1390 305 108 31 chr1 258761215 258761901 -23431763 - L3 LINE CR1 -267 1310 572 386 385 36 0 chr1 258762431 258762597 -23431067 - L2 LINE L2 0 3272 3101 492 263 63 96 chr1 258762614 258762884 -23430780 - MIR SINE MIR 0 262 2 2450 40 40 17 chr1 258763698 258763997 -23429667 - AluY SINE Alu -5 306 1 196 324 71 55 chr1 258764340 258764578 -23429086 + L2 LINE L2 2809 3050 -222 186 100 67 0 chr1 258765813 258765843 -23427821 - MIR SINE MIR -133 75 44 2120 129 0 32 chr1 258768542 258768851 -23424813 - AluSx SINE Alu -13 299 1 190 366 30 10 chr1 258769514 258769615 -23424049 - MIR SINE MIR -6 256 154 1110 81 0 7 chr1 258769938 258770074 -23423590 - AluSc SINE Alu -174 135 1 821 321 216 45 chr1 258770122 258772101 -23421563 + L2 LINE L2 420 2738 -576 258 348 76 43 chr1 258772201 258772385 -23421279 + L2 LINE L2 2892 3081 -191 226 200 0 0 chr1 258772750 258772790 -23420874 + GA-rich Low_complexity Low_complexity 4 43 0 1377 174 8 29 chr1 258773022 258773263 -23420401 - AluJo SINE Alu -75 237 2 260 329 108 33 chr1 258773643 258773856 -23419808 + L2 LINE L2 2733 2961 -353 22 0 0 0 chr1 258773859 258773881 -23419783 + AT_rich Low_complexity Low_complexity 1 22 0 2423 92 0 0 chr1 258773884 258774189 -23419475 - AluSg SINE Alu -5 305 1 440 127 0 0 chr1 258774200 258774263 -23419401 - FLAM_A SINE Alu -18 124 62 182 283 33 0 chr1 258774514 258774574 -23419090 + L2 LINE L2 3206 3267 -5 222 227 0 30 chr1 258774991 258775057 -23418607 + (CCCCG)n Simple_repeat Simple_repeat 5 68 0 29 78 0 0 chr1 258775381 258775445 -23418219 + GC_rich Low_complexity Low_complexity 1 64 0 1147 143 6 0 chr1 258777889 258778071 -23415593 + AluSg/x SINE Alu 123 305 -7 439 293 93 0 chr1 258778073 258778213 -23415451 - L2 LINE L2 -270 3043 2891 584 201 40 121 chr1 258778221 258778420 -23415244 - LTR16A1 LTR ERVL 0 457 275 204 200 0 0 chr1 258778420 258778455 -23415209 + (GGGTG)n Simple_repeat Simple_repeat 4 38 0 283 221 44 15 chr1 258778457 258778525 -23415139 - LTR16A1 LTR ERVL -179 278 209 449 275 72 60 chr1 258778961 258779247 -23414417 + MLT1J LTR MaLR 228 553 -62 257 298 97 34 chr1 258779303 258779431 -23414233 - L1MC/D LINE L1 -2237 5571 5453 2378 75 0 13 chr1 258779431 258779738 -23413926 - AluSx SINE Alu -9 303 1 257 298 97 34 chr1 258779738 258779847 -23413817 - L1MC/D LINE L1 -2355 5453 5319 189 0 0 0 chr1 258779860 258779881 -23413783 + (A)n Simple_repeat Simple_repeat 1 21 0 325 250 48 29 chr1 258779881 258779985 -23413679 - MER103 DNA DNA -59 107 2 2236 126 0 0 chr1 258780443 258780753 -23412911 + AluSg SINE Alu 1 310 0 2301 121 0 0 chr1 258780837 258781144 -23412520 - AluSx SINE Alu -3 309 3 2674 39 0 10 chr1 258781214 258781526 -23412138 + AluY SINE Alu 1 309 -2 2059 136 0 7 chr1 258781530 258781825 -23411839 + AluJb SINE Alu 3 295 -17 1669 229 24 0 chr1 258781826 258782202 -23411462 + L1ME2 LINE L1 5586 5970 -194 2000 162 0 0 chr1 258782405 258782701 -23410963 - AluSx SINE Alu -16 296 1 26 0 0 0 chr1 258782702 258782728 -23410936 + AT_rich Low_complexity Low_complexity 1 26 0 1660 237 76 24 chr1 258782931 258783522 -23410142 + HAL1 LINE L1 1886 2507 0 341 265 49 0 chr1 258783614 258783716 -23409948 - MIR3 SINE MIR -19 189 83 24 0 0 0 chr1 258784461 258784485 -23409179 + AT_rich Low_complexity Low_complexity 1 24 0 241 220 17 0 chr1 258785057 258785116 -23408548 - MIR SINE MIR -103 105 46 195 261 54 45 chr1 258785345 258785456 -23408208 + MIR SINE MIR 96 207 -55 4469 161 58 5 chr1 258786474 258787358 -23406306 - L1MB7 LINE L1 0 6184 5254 470 327 19 6 chr1 258787362 258787524 -23406140 + L2 LINE L2 2690 2853 -461 3711 228 39 46 chr1 258787635 258789342 -23404322 - HERVH LTR ERV1 -5581 2132 669 1328 247 65 26 chr1 258789400 258789829 -23403835 - HERVH LTR ERV1 -7267 446 1 558 270 69 25 chr1 258789829 258790033 -23403631 - LTR7 LTR ERV1 0 450 238 1058 77 173 6 chr1 258790198 258790354 -23403310 + THE1B LTR MaLR 183 364 0 * 2256 180 17 10 chr1 258790354 258790758 -23402906 + MER89 LTR ERV1 153 559 0 249 132 0 0 chr1 258790758 258790795 -23402869 + MER110A LTR ERV1 281 317 -151 277 200 26 130 chr1 258791208 258791323 -23402341 + LTR40b LTR ERVL 195 297 -165 3477 102 45 8 chr1 258791369 258791886 -23401778 + MER34B LTR ERV1 1 536 -29 608 248 66 2 chr1 258791972 258792157 -23401507 + MER110A LTR ERV1 286 468 0 1158 187 228 27 chr1 258792161 258792525 -23401139 + LTR54B LTR ERV1 1 459 -39 2137 125 0 7 chr1 258792525 258792822 -23400842 + AluSx SINE Alu 1 295 -17 1158 187 228 27 chr1 258792822 258792869 -23400795 + LTR54B LTR ERV1 459 495 -3 671 312 31 65 chr1 258792869 258793222 -23400442 + MER51-int LTR ERV1 1899 2239 -4092 484 252 20 14 chr1 258793210 258793357 -23400307 + MER51-int LTR ERV1 343 490 -7047 * 492 234 18 0 chr1 258793575 258793686 -23399978 + MER51-int LTR ERV1 7166 7278 -538 906 108 34 47 chr1 258793708 258793731 -23399933 + LTR54B LTR ERV1 1 23 -475 2144 120 127 41 chr1 258793731 258793907 -23399757 + MSTA LTR MaLR 1 160 -268 1898 171 0 7 chr1 258793907 258794206 -23399458 + AluJo SINE Alu 1 297 -15 2144 120 127 41 chr1 258794206 258794422 -23399242 + MSTA LTR MaLR 160 427 -1 906 108 34 47 chr1 258794422 258794546 -23399118 + LTR54B LTR ERV1 23 146 -352 660 120 168 0 chr1 258794593 258794718 -23398946 + LTR54 LTR ERV1 282 427 -83 1645 162 50 7 chr1 258794727 258795029 -23398635 - MER61A LTR ERV1 -28 315 1 445 172 11 0 chr1 258795029 258795115 -23398549 + LTR54 LTR ERV1 424 510 0 685 243 134 32 chr1 258795115 258795457 -23398207 - L2 LINE L2 -11 3302 2926 1691 161 19 67 chr1 258795892 258796208 -23397456 - Tigger7 DNA MER2_type -431 302 2 569 289 27 61 chr1 258796318 258796422 -23397242 - MIR SINE MIR -1 261 155 2125 116 7 0 chr1 258796422 258796714 -23396950 - AluSx SINE Alu -18 294 1 569 289 27 61 chr1 258796714 258796872 -23396792 - MIR SINE MIR -107 155 8 5812 118 49 8 chr1 258797656 258798211 -23395453 - L1PB2 LINE L1 -1 6150 5620 2296 111 0 0 chr1 258798211 258798508 -23395156 - AluSx SINE Alu -15 297 1 5812 118 49 8 chr1 258798508 258799181 -23394483 - L1PB2 LINE L1 -531 5620 4883 183 179 268 0 chr1 258799380 258799436 -23394228 + L2 LINE L2 2988 3058 -214 1165 188 14 5 chr1 258799533 258799740 -23393924 + AluJb SINE Alu 85 293 -19 263 266 0 0 chr1 258799743 258799807 -23393857 - MER5B DNA MER1_type -51 127 64 215 243 29 96 chr1 258799781 258799917 -23393747 + L2 LINE L2 3145 3271 -1 * 247 290 151 7 chr1 258799935 258800072 -23393592 - MIR3 SINE MIR -63 145 14 1317 198 86 32 chr1 258801415 258801763 -23391901 + MER93b LTR ERV1 5 371 -2 187 260 39 26 chr1 258801817 258801894 -23391770 + MIR SINE MIR 69 146 -62 302 221 13 13 chr1 258802079 258802156 -23391508 + GA-rich Low_complexity Low_complexity 5 81 0 344 368 11 22 chr1 258802867 258803049 -23390615 + (CA)n Simple_repeat Simple_repeat 1 180 0 779 266 202 26 chr1 258803450 258803972 -23389692 + L2 LINE L2 2687 3313 0 335 236 228 0 chr1 258803979 258804102 -23389562 - MIR SINE MIR -18 244 94 481 234 66 113 chr1 258804102 258804359 -23389305 - MLT1F1 LTR MaLR -297 253 1 5189 122 36 14 chr1 258804457 258805323 -23388341 - L1MA4A LINE L1 -3 6300 5416 302 310 31 88 chr1 258805410 258805636 -23388028 - L1MC4 LINE L1 -1 8041 7829 478 236 11 55 chr1 258805684 258805866 -23387798 - L1ME2 LINE L1 -15 6149 5976 1309 174 87 10 chr1 258805971 258806269 -23387395 - L1ME2 LINE L1 -204 5960 5640 268 303 218 0 chr1 258806429 258806594 -23387070 - MIR3 SINE MIR -1 207 7 2020 107 7 11 chr1 258806954 258807270 -23386394 - AluSg SINE Alu 0 315 1 1566 133 82 62 chr1 258808028 258808381 -23385283 + MER46B DNA MER2_type 2 236 0 259 317 0 49 chr1 258808383 258808506 -23385158 - MLT1F1-int LTR MaLR -232 1139 1023 1601 173 69 62 chr1 258808515 258808936 -23384728 + LTR37A LTR ERV1 1 424 -2 1258 222 8 97 chr1 258809381 258809732 -23383932 + MLT1A1 LTR MaLR 46 365 0 3296 197 91 11 chr1 258809732 258810359 -23383305 + L1ME1 LINE L1 5319 6022 -144 314 23 0 23 chr1 258810359 258810403 -23383261 + (CTGGGG)n Simple_repeat Simple_repeat 4 46 0 3296 197 91 11 chr1 258810403 258810558 -23383106 + L1ME1 LINE L1 6022 6163 -3 1446 90 22 36 chr1 258810565 258810787 -23382877 + AluSp SINE Alu 91 309 -4 2181 126 3 0 chr1 258810811 258811136 -23382528 + AluSx SINE Alu 1 312 0 364 243 62 62 chr1 258811389 258811533 -23382131 - MLT1I LTR MaLR 0 549 285 260 212 0 30 chr1 258811826 258811892 -23381772 - MLT1I LTR MaLR -391 158 95 1024 224 77 120 chr1 258811912 258812422 -23381242 + LTR45B LTR ERV1 2 489 0 517 230 12 47 chr1 258812478 258812683 -23380981 + L1ME2 LINE L1 5687 5884 -280 2449 91 0 0 chr1 258812971 258813279 -23380385 - AluY SINE Alu -1 310 3 21 0 0 0 chr1 258813281 258813302 -23380362 + AT_rich Low_complexity Low_complexity 1 21 0 2100 63 7 30 chr1 258813673 258813942 -23379722 + AluY SINE Alu 33 295 -16 345 294 84 7 chr1 258814762 258814905 -23378759 + MIR SINE MIR 48 201 -61 3391 94 9 2 chr1 258815068 258815516 -23378148 + MLT2A2 LTR ERVL 1 451 -2 244 295 108 23 chr1 258816915 258817044 -23376620 + MIR SINE MIR 13 152 -110 2183 109 0 3 chr1 258817046 258817331 -23376333 + AluSg SINE Alu 15 298 -12 240 304 196 0 chr1 258817451 258817543 -23376121 + L2 LINE L2 3137 3246 -26 667 238 120 82 chr1 258817560 258817926 -23375738 - MLT1J LTR MaLR -124 387 8 848 324 130 22 chr1 258818088 258818535 -23375129 - L3 LINE CR1 -224 1353 827 2032 156 44 16 chr1 258818535 258818900 -23374764 - THE1C LTR MaLR 0 375 1 848 324 130 22 chr1 258818900 258819193 -23374471 - L3 LINE CR1 -750 827 567 214 287 7 98 chr1 258819714 258819809 -23373855 - L3 LINE CR1 -999 578 499 2080 86 0 15 chr1 258819809 258820078 -23373586 - AluY SINE Alu -13 298 34 214 287 7 98 chr1 258820078 258820125 -23373539 - L3 LINE CR1 -1078 499 449 248 302 47 31 chr1 258820297 258820426 -23373238 - MIR SINE MIR -18 244 114 201 276 147 17 chr1 258821754 258821870 -23371794 - MIR SINE MIR -14 248 118 450 176 0 0 chr1 258822572 258822657 -23371007 + (CATA)n Simple_repeat Simple_repeat 4 88 0 497 254 119 27 chr1 258823044 258823229 -23370435 - MIR SINE MIR -18 244 43 1919 91 4 0 chr1 258825392 258825635 -23368029 - AluSg SINE Alu -17 293 50 4301 106 52 42 chr1 258825684 258825731 -23367933 - L1MA8 LINE L1 -3 6288 6243 4536 112 13 2 chr1 258825731 258826359 -23367305 - MER41B LTR ERV1 0 635 1 4301 106 52 42 chr1 258826359 258826500 -23367164 - L1MA8 LINE L1 -48 6243 6105 1840 154 0 31 chr1 258826500 258826793 -23366871 - AluJb SINE Alu -28 284 1 4301 106 52 42 chr1 258826793 258827337 -23366327 - L1MA8 LINE L1 -186 6105 5548 2270 109 3 3 chr1 258827898 258828192 -23365472 + AluSp SINE Alu 1 294 -19 2387 143 11 66 chr1 258828419 258828874 -23364790 - MER4D LTR ERV1 0 903 474 1452 113 58 27 chr1 258828862 258829119 -23364545 - MER4D LTR ERV1 -635 268 4 * 2356 77 20 8 chr1 258829528 258829921 -23363743 + LTR7 LTR ERV1 7 448 -2 14361 130 25 34 chr1 258829923 258832825 -23360839 + HERVH LTR ERV1 1 2995 -4718 1014 113 7 0 chr1 258832804 258832954 -23360710 + HERVH LTR ERV1 3140 3290 -4423 * 8064 147 5 12 chr1 258832944 258834683 -23358981 + HERVH LTR ERV1 3492 5149 -2297 1407 150 0 0 chr1 258834684 258834904 -23358760 + HERVH LTR ERV1 5600 5819 -1894 2439 83 59 13 chr1 258834904 258835277 -23358387 + HERVH LTR ERV1 7324 7713 0 2079 88 36 18 chr1 258835277 258835669 -23357995 + LTR7 LTR ERV1 1 443 -7 2632 58 0 3 chr1 258836058 258836366 -23357298 - AluY SINE Alu -4 307 1 297 191 0 16 chr1 258836734 258836797 -23356867 - MLT1K LTR MaLR -339 249 188 189 0 0 0 chr1 258837153 258837174 -23356490 + (T)n Simple_repeat Simple_repeat 1 21 0 2369 179 35 73 chr1 258837232 258837745 -23355919 - MLT2B3 LTR ERVL 0 554 64 2604 49 0 10 chr1 258837745 258838051 -23355613 - AluY SINE Alu -8 303 1 2369 179 35 73 chr1 258838051 258838113 -23355551 - MLT2B3 LTR ERVL -490 64 1 1560 245 47 32 chr1 258838734 258839204 -23354460 - L1ME3A LINE L1 -1 6169 5693 2154 118 0 7 chr1 258839291 258839616 -23354048 - AluSg SINE Alu 0 310 1 2022 115 10 20 chr1 258839755 258840051 -23353613 + AluSc SINE Alu 1 293 -16 222 324 0 0 chr1 258841115 258841183 -23352481 + MIR SINE MIR 37 104 -104 338 323 52 39 chr1 258842079 258842234 -23351430 - MIR3 SINE MIR -9 199 43 200 246 61 44 chr1 258842311 258842425 -23351239 - MIR SINE MIR -13 249 134 376 234 115 25 chr1 258842558 258842711 -23350953 + MLT1J2 LTR MaLR 60 241 -270 246 333 54 16 chr1 258842741 258842870 -23350794 + MLT1J2 LTR MaLR 258 391 -59 480 165 9 17 chr1 258843120 258843235 -23350429 + Charlie7 DNA MER1_type 2468 2581 -31 1224 220 212 31 chr1 258843840 258844123 -23349541 - MLT1G3 LTR MaLR 0 530 300 261 0 0 0 chr1 258844123 258844152 -23349512 + (GA)n Simple_repeat Simple_repeat 1 29 0 1224 220 212 31 chr1 258844152 258844375 -23349289 - MLT1G3 LTR MaLR -230 300 1 1412 249 95 10 chr1 258846803 258847193 -23346471 + LTR16C LTR ERVL 69 491 0 2142 158 3 40 chr1 258847808 258848187 -23345477 + MER47A DNA MER2_type 2 366 0 666 282 50 12 chr1 258848346 258848587 -23345077 + MIR SINE MIR 13 262 0 216 278 0 14 chr1 258848669 258848741 -23344923 + MER5B DNA MER1_type 34 104 -74 1926 126 76 25 chr1 258848746 258849103 -23344561 - THE1C LTR MaLR 0 375 1 528 262 42 6 chr1 258849108 258849276 -23344388 + L1MC4a LINE L1 7528 7701 -107 * 7157 160 19 6 chr1 258849260 258849814 -23343850 + L1PB2 LINE L1 3844 4389 -1762 225 0 0 0 chr1 258849814 258849839 -23343825 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 7157 160 19 6 chr1 258849839 258851564 -23342100 + L1PB2 LINE L1 4389 6150 -1 404 223 107 0 chr1 258851569 258851690 -23341974 + L1MD3 LINE L1 7861 7994 -1 2032 140 3 0 chr1 258852489 258852781 -23340883 + AluSx SINE Alu 1 293 -19 6834 112 32 22 chr1 258853168 258854228 -23339436 + MER11C LTR ERVK 1 1071 0 892 247 31 28 chr1 258854926 258855181 -23338483 + MLT1H1 LTR MaLR 12 267 -288 338 238 89 10 chr1 258855253 258855354 -23338310 + MLT1G1 LTR MaLR 487 595 0 415 261 18 55 chr1 258855470 258855635 -23338029 - MIR SINE MIR -12 250 92 307 349 20 26 chr1 258855937 258856132 -23337532 - L2 LINE L2 -435 2879 2686 1374 167 50 150 chr1 258857365 258857825 -23335839 - MLT2D LTR ERVL 0 414 1 281 328 45 30 chr1 258858526 258858660 -23335004 + MIR3 SINE MIR 15 150 -58 529 146 12 9 chr1 258858941 258859039 -23334625 + MLT2A2 LTR ERVL 332 514 -40 227 266 89 0 chr1 258859107 258859186 -23334478 + MER112 DNA MER1_type 1 86 -174 239 204 0 0 chr1 258859275 258859324 -23334340 - L1MB2 LINE L1 -5 6166 6118 3812 137 24 3 chr1 258859839 258860430 -23333234 + LTR26 LTR ERV1 1 603 0 548 278 57 16 chr1 258860495 258860689 -23332975 - MIR SINE MIR -48 214 13 2037 133 0 43 chr1 258861424 258861748 -23331916 + AluSx SINE Alu 1 310 -2 448 294 144 10 chr1 258861952 258862153 -23331511 + MIR SINE MIR 17 244 -18 2049 141 0 3 chr1 258862187 258862524 -23331140 + AluSx SINE Alu 1 312 0 364 243 62 62 chr1 258862777 258862921 -23330743 - MLT1I LTR MaLR 0 549 285 260 212 0 30 chr1 258863214 258863280 -23330384 - MLT1I LTR MaLR -391 158 95 1024 224 77 120 chr1 258863300 258863810 -23329854 + LTR45B LTR ERV1 2 489 0 517 230 12 47 chr1 258863866 258864071 -23329593 + L1ME2 LINE L1 5687 5884 -280 878 104 22 0 chr1 258864358 258864492 -23329172 - AluY SINE Alu -2 309 173 5995 191 7 17 chr1 258864592 258865771 -23327893 + HERVH LTR ERV1 2617 3783 -3930 * 20581 177 12 6 chr1 258865759 258869369 -23324295 + HERVH LTR ERV1 4081 7713 0 652 207 7 27 chr1 258869521 258869671 -23323993 + LTR7 LTR ERV1 303 449 -1 * 1466 106 48 0 chr1 258869671 258869858 -23323806 - THE1B LTR MaLR -167 197 1 533 163 22 0 chr1 258869916 258870008 -23323656 - MER89 LTR ERV1 -465 94 1 * 826 250 127 5 chr1 258870008 258870227 -23323437 - MER110A LTR ERV1 -184 284 39 303 207 149 83 chr1 258870387 258870508 -23323156 - MIR SINE MIR -114 148 20 798 174 0 92 chr1 258871332 258871441 -23322223 + MER5B DNA MER1_type 1 118 -60 2438 85 3 7 chr1 258871441 258871747 -23321917 + AluSp SINE Alu 1 305 -8 798 174 0 92 chr1 258871747 258871788 -23321876 + MER5B DNA MER1_type 118 132 -46 2640 147 56 9 chr1 258871788 258872251 -23321413 - MER31A LTR ERV1 0 485 1 798 174 0 92 chr1 258872251 258872295 -23321369 + MER5B DNA MER1_type 132 178 0 1357 167 4 9 chr1 258873174 258873401 -23320263 + MLT1A1 LTR MaLR 140 365 0 664 154 9 9 chr1 258873402 258873512 -23320152 - MLT1A1 LTR MaLR -255 110 1 213 297 67 61 chr1 258873590 258873755 -23319909 - MIR3 SINE MIR -23 185 20 2818 163 44 20 chr1 258873877 258874423 -23319241 - MER89 LTR ERV1 0 559 1 3582 175 67 23 chr1 258874998 258875747 -23317917 + L1MB8 LINE L1 5401 6334 0 320 141 26 38 chr1 258876112 258876198 -23317466 + AluJ/FLAM SINE Alu 35 97 -205 299 186 93 52 chr1 258876301 258876398 -23317266 - MIR SINE MIR -101 161 61 853 191 143 0 chr1 258876413 258876602 -23317062 - MER89 LTR ERV1 -192 367 152 23 33 0 0 chr1 258877651 258877681 -23315983 + AT_rich Low_complexity Low_complexity 1 30 0 491 185 104 74 chr1 258877997 258878132 -23315532 - FLAM_A SINE Alu -3 139 1 1114 167 32 71 chr1 258878497 258878779 -23314885 + MLT2B3 LTR ERVL 281 551 -3 189 0 0 0 chr1 258878840 258878861 -23314803 + (A)n Simple_repeat Simple_repeat 1 21 0 185 256 0 0 chr1 258878904 258878947 -23314717 + L2 LINE L2 2601 2643 -671 297 191 0 16 chr1 258879217 258879280 -23314384 + MLT1K LTR MaLR 188 249 -339 2473 81 0 0 chr1 258879648 258879957 -23313707 + AluY SINE Alu 1 309 -2 4188 156 43 51 chr1 258879957 258880863 -23312801 + L1MA7 LINE L1 5393 6291 0 2978 223 39 15 chr1 258880898 258881754 -23311910 + L1M4 LINE L1 3562 4437 -1709 702 214 13 0 chr1 258881757 258881916 -23311748 + MLT2B1 LTR ERVL 3 163 -357 752 205 38 22 chr1 258881921 258882106 -23311558 + MSTD LTR MaLR 4 191 -205 1350 193 62 14 chr1 258882107 258882382 -23311282 + AluJo SINE Alu 1 288 -24 2167 92 13 3 chr1 258882382 258882685 -23310979 - L1PA10 LINE L1 -485 5683 5378 3452 77 11 0 chr1 258882685 258883130 -23310534 + L1PA10 LINE L1 5690 6149 -19 1335 92 12 6 chr1 258883130 258883303 -23310361 + AluSq SINE Alu 15 188 -125 445 259 22 79 chr1 258883900 258884039 -23309625 + MLT2B1 LTR ERVL 275 405 -115 384 40 0 0 chr1 258884044 258884094 -23309570 + (TCTCTG)n Simple_repeat Simple_repeat 3 52 0 476 128 12 12 chr1 258884112 258884198 -23309466 - L1 LINE L1 -1747 4399 4314 762 79 0 0 chr1 258884301 258884402 -23309262 + AluY SINE Alu 201 301 -10 42268 48 9 1 chr1 258884698 258890805 -23302859 + L1PA4 LINE L1 4 6163 0 237 175 53 0 chr1 258890823 258890880 -23302784 + L1M4 LINE L1 5181 5240 -906 1102 265 182 33 chr1 258890932 258891388 -23302276 + MLT1H1 LTR MaLR 32 555 0 691 124 0 0 chr1 258891417 258891522 -23302142 - MSTA LTR MaLR -323 105 1 2222 87 0 45 chr1 258891620 258891929 -23301735 - AluY SINE Alu -16 295 1 268 272 4 14 chr1 258892073 258892158 -23301506 + L1MEc LINE L1 1553 1622 -4762 315 176 47 0 chr1 258892178 258892263 -23301401 - L1MB3 LINE L1 -1 6182 6094 15141 190 33 10 chr1 258892264 258897402 -23296262 - L1MA4 LINE L1 -282 6720 1462 8478 167 20 17 chr1 258897407 258899948 -23293716 + L1MA4A LINE L1 3671 6280 -23 3615 81 119 30 chr1 258899972 258900420 -23293244 - Tigger3b DNA MER2_type -2265 763 235 2385 55 0 3 chr1 258900420 258900712 -23292952 + AluY SINE Alu 1 291 -20 3615 81 119 30 chr1 258900712 258900927 -23292737 - Tigger3b DNA MER2_type -2793 235 41 772 172 91 48 chr1 258901462 258901671 -23291993 + L1 LINE L1 4331 4548 -1598 41942 53 10 1 chr1 258901682 258907769 -23285895 - L1PA4 LINE L1 -3 6152 11 25 75 0 0 chr1 258909899 258909952 -23283712 + AT_rich Low_complexity Low_complexity 1 53 0 1834 148 7 13 chr1 258910073 258910357 -23283307 + AluJb SINE Alu 1 284 -28 276 53 0 0 chr1 258910357 258910395 -23283269 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 1834 148 7 13 chr1 258910395 258910414 -23283250 + AluJb SINE Alu 284 302 -10 432 343 33 50 chr1 258910615 258910974 -23282690 + HAL1 LINE L1 1379 1731 -776 269 312 108 20 chr1 258911510 258912046 -23281618 + L1M4 LINE L1 2200 2782 -3364 * 8809 143 26 28 chr1 258912045 258912790 -23280874 + L1MA2 LINE L1 3594 4339 -1965 2203 128 0 3 chr1 258912790 258913103 -23280561 - AluSx SINE Alu 0 312 1 8809 143 26 28 chr1 258913103 258914877 -23278787 + L1MA2 LINE L1 4339 6104 -200 311 282 99 24 chr1 258914887 258915313 -23278351 + L1M4 LINE L1 2938 3395 -2751 23 54 0 0 chr1 258915354 258915391 -23278273 + AT_rich Low_complexity Low_complexity 1 37 0 235 270 9 54 chr1 258915478 258915589 -23278075 - L1 LINE L1 -3411 2735 2630 189 320 0 88 chr1 258916142 258916267 -23277397 - MIR SINE MIR -70 192 79 283 303 112 40 chr1 258916738 258916890 -23276774 + MLT1K LTR MaLR 60 222 -366 952 294 77 43 chr1 258916890 258917332 -23276332 - LTR67 LTR ERVL 0 557 101 279 263 81 20 chr1 258917609 258917708 -23275956 + MLT1L LTR MaLR 503 607 -8 694 134 81 27 chr1 258917879 258918028 -23275636 - L1MA6 LINE L1 -117 6183 6027 22 0 0 0 chr1 258918372 258918394 -23275270 + AT_rich Low_complexity Low_complexity 1 22 0 438 200 128 67 chr1 258918855 258918943 -23274721 + MLT1D LTR MaLR 16 97 -408 2777 10 0 3 chr1 258918943 258919251 -23274413 + AluYa5 SINE Alu 1 307 -4 438 200 128 67 chr1 258919251 258919357 -23274307 + MLT1D LTR MaLR 97 222 -283 630 269 101 0 chr1 258919499 258919707 -23273957 + MLT1D LTR MaLR 277 505 0 21 36 0 0 chr1 258920541 258920569 -23273095 + AT_rich Low_complexity Low_complexity 1 28 0 802 282 107 32 chr1 258920782 258921808 -23271856 - L1MC/D LINE L1 -747 5399 4436 923 247 6 0 chr1 258922578 258922760 -23270904 + MER5A DNA MER1_type 1 183 -6 1846 121 70 7 chr1 258924948 258925221 -23268443 + AluSx SINE Alu 3 292 -20 8197 140 30 11 chr1 258925234 258927258 -23266406 + L1PA13 LINE L1 3326 5413 -750 2368 99 0 0 chr1 258927258 258927561 -23266103 + AluSg SINE Alu 1 303 -7 8197 140 30 11 chr1 258927561 258928323 -23265341 + L1PA13 LINE L1 5413 6159 -4 21 0 0 0 chr1 258928407 258928428 -23265236 + AT_rich Low_complexity Low_complexity 1 21 0 309 289 0 0 chr1 258929207 258929297 -23264367 + MER91B DNA MER1_type 96 185 -5 313 308 108 33 chr1 258929358 258929572 -23264092 - Charlie8 DNA MER1_type -2172 245 16 513 135 40 32 chr1 258929682 258929808 -23263856 - MER96B DNA MER1_type? -228 189 63 375 152 0 0 chr1 258930945 258931024 -23262640 + CT-rich Low_complexity Low_complexity 2 80 0 288 53 0 0 chr1 258931026 258931064 -23262600 + (CA)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr1 258932218 258932247 -23261417 + AT_rich Low_complexity Low_complexity 1 29 0 39 38 0 0 chr1 258932520 258932573 -23261091 + AT_rich Low_complexity Low_complexity 1 53 0 2376 204 34 61 chr1 258932787 258933021 -23260643 - MER119 DNA MER1_type 0 583 344 2064 117 14 3 chr1 258933021 258933311 -23260353 - AluSx SINE Alu -19 293 1 2376 204 34 61 chr1 258933311 258933670 -23259994 - MER119 DNA MER1_type -239 344 6 1385 170 22 84 chr1 258934426 258934784 -23258880 - MER44D DNA MER2_type 0 609 4 217 340 67 46 chr1 258935637 258935875 -23257789 - L2 LINE L2 -774 2540 2298 3345 266 117 25 chr1 258936990 258938257 -23255407 + L1PA11 LINE L1 1 1383 -6198 1996 132 0 0 chr1 258938310 258938616 -23255048 + AluSx SINE Alu 9 314 0 12181 165 23 18 chr1 258938623 258943763 -23249901 + L1PA11 LINE L1 2386 7612 0 2223 197 16 39 chr1 258944251 258944768 -23248896 + MLT1D LTR MaLR 1 505 0 305 278 118 0 chr1 258944828 258944972 -23248692 - L1MC4 LINE L1 -17 8025 7865 371 167 0 0 chr1 258945047 258945107 -23248557 + Tigger1 DNA MER2_type 1 60 -2358 181 0 69 0 chr1 258945114 258945143 -23248521 + (TTA)n Simple_repeat Simple_repeat 3 33 0 15398 24 0 0 chr1 258945143 258947704 -23245960 - L1PA3 LINE L1 -18 6137 3578 15791 39 1 0 chr1 258947704 258949668 -23243996 + L1PA3 LINE L1 1603 3569 -2577 1829 179 10 3 chr1 258949668 258949981 -23243683 + Tigger1 DNA MER2_type 49 363 -2055 435 220 47 47 chr1 258950008 258950158 -23243506 + L1ME4a LINE L1 5636 5785 -336 28 61 0 0 chr1 258950254 258950303 -23243361 + AT_rich Low_complexity Low_complexity 1 49 0 319 229 0 0 chr1 258950308 258950378 -23243286 + L1ME4a LINE L1 5978 6047 -74 22 56 0 0 chr1 258950394 258950430 -23243234 + AT_rich Low_complexity Low_complexity 1 36 0 279 295 315 7 chr1 258951345 258951494 -23242170 + MIR SINE MIR 66 260 -2 341 335 161 7 chr1 258951623 258951778 -23241886 + L2 LINE L2 2512 2690 -624 405 218 97 107 chr1 258952012 258952192 -23241472 - L1ME3A LINE L1 -219 5951 5774 180 0 0 0 chr1 258952192 258952212 -23241452 + (CA)n Simple_repeat Simple_repeat 2 21 0 405 218 97 107 chr1 258952212 258952320 -23241344 - L1ME3A LINE L1 -396 5774 5666 514 327 104 18 chr1 258952320 258952687 -23240977 + L2 LINE L2 2680 3077 -195 20634 175 34 44 chr1 258952714 258954140 -23239524 - L1PA11 LINE L1 -14 7598 6159 2083 89 0 0 chr1 258954140 258954399 -23239265 - AluY SINE Alu -52 259 1 20634 175 34 44 chr1 258954399 258959543 -23234121 - L1PA11 LINE L1 -1453 6159 7 29 104 0 0 chr1 258960108 258960214 -23233450 + AT_rich Low_complexity Low_complexity 1 106 0 23 0 0 0 chr1 258960763 258960786 -23232878 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr1 258961074 258961116 -23232548 + AT_rich Low_complexity Low_complexity 1 42 0 6870 110 59 29 chr1 258961390 258961851 -23231813 - Tigger3b DNA MER2_type -1797 1231 785 1702 152 13 46 chr1 258961851 258962153 -23231511 + AluJo SINE Alu 1 292 -20 6870 110 59 29 chr1 258962153 258962886 -23230778 - Tigger3b DNA MER2_type -2243 785 1 11763 102 8 5 chr1 258963632 258965394 -23228270 - L1PA8 LINE L1 -1869 4277 2511 7363 93 7 1 chr1 258965394 258967309 -23226355 + L1PA8 LINE L1 4281 6167 -5 386 331 60 51 chr1 258967541 258967654 -23226010 + L1MEc LINE L1 1396 1506 -4890 2248 65 25 0 chr1 258967654 258967929 -23225735 + AluY SINE Alu 3 284 -27 386 331 60 51 chr1 258967929 258968229 -23225435 + L1MEc LINE L1 1506 1813 -4583 599 196 20 9 chr1 258968474 258968612 -23225052 + L1MC3 LINE L1 6613 6726 -1059 1375 325 41 7 chr1 258968662 258969219 -23224445 + ERVL LTR ERVL 1914 2489 -3275 421 318 8 0 chr1 258969376 258969502 -23224162 + L1MEc LINE L1 182 308 -6088 * 2886 204 54 27 chr1 258969498 258970251 -23223413 - L1MB7 LINE L1 -13 6171 5398 628 275 74 0 chr1 258970275 258970424 -23223240 + MER58C DNA MER1_type 1 160 -55 1430 197 35 53 chr1 258970449 258970824 -23222840 - MER74A LTR ERVL -30 528 161 301 189 0 0 chr1 258970819 258970872 -23222792 + MLT1B LTR MaLR 133 185 -205 * 562 69 0 0 chr1 258970883 258970955 -23222709 + MLT1B LTR MaLR 317 388 -2 969 191 99 69 chr1 258970955 258971084 -23222580 + L1M4 LINE L1 4893 5017 -1160 2250 119 0 0 chr1 258971084 258971378 -23222286 - AluSq SINE Alu -17 296 3 969 191 99 69 chr1 258971378 258971731 -23221933 + L1M4 LINE L1 5017 5388 -789 225 148 19 0 chr1 258971786 258971840 -23221824 + L1ME4a LINE L1 6062 6116 -5 764 289 128 40 chr1 258973752 258974222 -23219442 + MLT1J LTR MaLR 1 511 0 359 257 155 35 chr1 258975443 258975907 -23217757 + L1MEc LINE L1 601 1151 -5143 * 393 309 65 38 chr1 258975906 258976203 -23217461 + L1M4 LINE L1 4104 4406 -1740 28 0 0 0 chr1 258976340 258976368 -23217296 + AT_rich Low_complexity Low_complexity 1 28 0 383 312 63 46 chr1 258976386 258976671 -23216993 + L1M4 LINE L1 4399 4688 -1458 319 203 21 0 chr1 258976810 258976908 -23216756 + L1MEc LINE L1 3011 3111 -3104 2466 65 13 0 chr1 258977434 258977741 -23215923 - AluY SINE Alu 0 311 1 222 338 15 0 chr1 258978049 258978117 -23215547 - MIR3 SINE MIR -15 193 125 235 264 33 44 chr1 258978144 258978235 -23215429 - L1ME LINE L1 -563 5558 5469 3001 112 28 10 chr1 258979341 258979840 -23213824 - L1MA7 LINE L1 0 6291 5784 727 136 0 124 chr1 258979880 258979975 -23213689 - L1MA7 LINE L1 -453 5838 5773 2295 107 0 3 chr1 258979975 258980274 -23213390 + AluSx SINE Alu 1 298 -14 727 136 0 124 chr1 258980274 258980355 -23213309 - L1MA7 LINE L1 -518 5773 5684 7148 157 33 14 chr1 258980361 258981750 -23211914 - L1MA7 LINE L1 -1288 4858 3443 255 175 0 0 chr1 258981817 258981857 -23211807 + 5S rRNA rRNA 3 42 -79 3713 189 19 8 chr1 258982047 258982847 -23210817 - L1 LINE L1 -786 5360 4552 444 147 0 0 chr1 258983098 258983173 -23210491 + (TA)n Simple_repeat Simple_repeat 1 75 0 567 275 66 12 chr1 258983175 258983342 -23210322 + L2 LINE L2 2310 2485 -829 245 299 66 42 chr1 258983377 258983544 -23210120 + L2 LINE L2 2460 2630 -684 24 0 0 0 chr1 258985823 258985847 -23207817 + AT_rich Low_complexity Low_complexity 1 24 0 246 226 0 0 chr1 258986154 258986207 -23207457 + L2 LINE L2 3256 3308 -5 2426 67 14 0 chr1 258987199 258987496 -23206168 - AluY SINE Alu -10 301 1 319 217 0 29 chr1 258987598 258987667 -23205997 + MIR3 SINE MIR 100 166 -42 12579 39 10 3 chr1 258988086 258990389 -23203275 + L1PA5 LINE L1 3841 6150 -4 373 302 0 0 chr1 258990989 258991075 -23202589 - MER5A DNA MER1_type -47 142 57 24 0 0 0 chr1 258993032 258993056 -23200608 + AT_rich Low_complexity Low_complexity 1 24 0 2222 42 7 31 chr1 258993056 258993363 -23200301 + AluY SINE Alu 1 300 0 1947 104 0 37 chr1 258993890 258994103 -23199561 - L1P4 LINE L1 -461 5702 5502 2451 24 40 7 chr1 258994103 258994399 -23199265 - AluY SINE Alu -5 306 1 1947 104 0 37 chr1 258994399 258994484 -23199180 - L1P4 LINE L1 -661 5502 5415 740 176 19 98 chr1 258994817 258995022 -23198642 - MIR SINE MIR -27 235 47 496 192 27 75 chr1 258995554 258995700 -23197964 + Charlie4 DNA MER1_type 1818 1956 -5 211 224 0 0 chr1 258996023 258996072 -23197592 + (TA)n Simple_repeat Simple_repeat 2 50 0 243 125 0 0 chr1 258996110 258996150 -23197514 + (GA)n Simple_repeat Simple_repeat 1 40 0 1678 158 33 23 chr1 258996520 258996635 -23197029 + AluJb SINE Alu 1 113 -199 192 77 0 0 chr1 258996635 258996661 -23197003 + (CA)n Simple_repeat Simple_repeat 1 26 0 1678 158 33 23 chr1 258996661 258996848 -23196816 + AluJb SINE Alu 113 306 -6 677 101 8 31 chr1 258996848 258996977 -23196687 + (GGAA)n Simple_repeat Simple_repeat 1 126 0 204 231 0 0 chr1 258996989 258997041 -23196623 + G-rich Low_complexity Low_complexity 1 52 0 33 0 0 0 chr1 258997862 258997895 -23195769 + AT_rich Low_complexity Low_complexity 1 33 0 538 300 47 40 chr1 258998152 258998565 -23195099 + L2 LINE L2 2400 3235 -78 2087 106 0 34 chr1 258998873 258999206 -23194458 - AluSq SINE Alu 0 323 1 464 208 227 10 chr1 258999374 258999581 -23194083 + Zaphod DNA AcHobo 2081 2332 -1699 1837 254 80 56 chr1 258999627 259000218 -23193446 + L1MC3 LINE L1 780 1408 -4976 2426 94 0 0 chr1 259000218 259000525 -23193139 + AluY SINE Alu 1 307 -4 1837 254 80 56 chr1 259000525 259000959 -23192705 + L1MC3 LINE L1 1408 1830 -4554 1904 208 27 58 chr1 259000965 259001483 -23192181 - MLT1D LTR MaLR 0 626 1 286 299 62 40 chr1 259001491 259001715 -23191949 + L1MC3 LINE L1 1983 2211 -4352 1205 171 18 29 chr1 259001750 259002031 -23191633 + L1MA9 LINE L1 6033 6310 -2 955 299 56 0 chr1 259002355 259002643 -23191021 - LTR16C LTR ERVL 0 491 188 518 300 50 0 chr1 259002695 259002935 -23190729 - L1M4 LINE L1 -747 5399 5148 6617 237 45 20 chr1 259002965 259005142 -23188522 + L1MC3 LINE L1 2260 4483 -1899 2110 127 13 0 chr1 259005167 259005467 -23188197 + AluSx SINE Alu 1 304 -8 1918 157 3 3 chr1 259005475 259005774 -23187890 + AluJo SINE Alu 1 299 -13 515 159 140 0 chr1 259005788 259005895 -23187769 - L1MA5 LINE L1 -480 5820 5699 2146 176 31 13 chr1 259005895 259006349 -23187315 + L1MA5 LINE L1 5839 6300 0 6247 178 127 7 chr1 259006371 259007863 -23185801 + L1MC3 LINE L1 5613 7447 -574 195 100 0 0 chr1 259007863 259007893 -23185771 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 6247 178 127 7 chr1 259007893 259008547 -23185117 + L1MC3 LINE L1 7447 8021 0 3597 213 53 1 chr1 259008542 259009365 -23184299 + L1MB7 LINE L1 5318 6183 -1 * 27 49 0 0 chr1 259009604 259009645 -23184019 + AT_rich Low_complexity Low_complexity 1 41 0 519 194 0 0 chr1 259010487 259010595 -23183069 + (TA)n Simple_repeat Simple_repeat 2 109 0 3840 133 46 10 chr1 259010650 259011325 -23182339 - L1MA5A LINE L1 -5 6934 6236 1243 162 35 0 chr1 259011326 259011524 -23182140 - AluJb SINE Alu -21 291 87 5517 142 22 39 chr1 259011528 259012884 -23180780 - L1MA5A LINE L1 -694 6245 4898 5907 98 12 0 chr1 259012887 259013723 -23179941 + L1PA13 LINE L1 5307 6152 -11 9228 222 42 40 chr1 259013736 259014441 -23179223 - L1MA5A LINE L1 -1881 4907 4205 2135 121 0 10 chr1 259014441 259014738 -23178926 + AluSx SINE Alu 3 296 -16 9228 222 42 40 chr1 259014738 259016142 -23177522 - L1MA5A LINE L1 -2583 4205 2806 802 127 0 0 chr1 259016142 259016260 -23177404 - FLAM_C SINE Alu -15 118 1 9228 222 42 40 chr1 259016260 259019032 -23174632 - L1MA5A LINE L1 -3982 2806 15 1351 190 77 25 chr1 259020340 259020614 -23173050 + AluJo SINE Alu 4 291 -21 207 78 94 0 chr1 259021990 259022054 -23171610 + (TA)n Simple_repeat Simple_repeat 1 70 0 22 0 0 0 chr1 259022986 259023008 -23170656 + AT_rich Low_complexity Low_complexity 1 22 0 1944 149 7 3 chr1 259024179 259024480 -23169184 + AluJo SINE Alu 3 304 -8 1825 261 92 26 chr1 259025175 259025677 -23167987 - REP3 LTR ERV -27 535 1 320 253 39 84 chr1 259026401 259026579 -23167085 - HERVL40 LTR ERVL -881 4649 4480 744 203 114 42 chr1 259027087 259027324 -23166340 - L1M4 LINE L1 -2154 3992 3739 328 356 41 14 chr1 259027511 259027657 -23166007 + MIR SINE MIR 3 152 -110 206 340 107 19 chr1 259028443 259028546 -23165118 - L2 LINE L2 -9 3263 3152 1706 278 19 44 chr1 259028951 259029505 -23164159 - Charlie7 DNA MER1_type -1923 689 123 2011 121 0 0 chr1 259029513 259029786 -23163878 + AluSc SINE Alu 1 273 -36 1236 52 0 7 chr1 259029786 259029983 -23163681 + L1PA3 LINE L1 6001 6198 0 1706 278 19 44 chr1 259029983 259030064 -23163600 - Charlie7 DNA MER1_type -2489 123 68 264 77 0 0 chr1 259030064 259030103 -23163561 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1706 278 19 44 chr1 259030103 259030141 -23163523 - Charlie7 DNA MER1_type -2544 68 31 693 189 137 0 chr1 259030172 259030362 -23163302 - MER69 DNA AcHobo -47 2479 2264 31212 120 11 44 chr1 259030362 259036712 -23156952 - L1PA7 LINE L1 -13 6141 8 1920 214 71 5 chr1 259036717 259037463 -23156201 - MER69 DNA AcHobo -226 2300 1472 2616 251 85 7 chr1 259037476 259038172 -23155492 - MER69 DNA AcHobo -1772 754 5 526 255 87 0 chr1 259038761 259038922 -23154742 - MER104 DNA MER2_type -3 177 3 346 225 25 12 chr1 259039573 259039653 -23154011 - L2 LINE L2 0 3313 3233 872 309 16 0 chr1 259039653 259039896 -23153768 - L2 LINE L2 -257 3056 2810 685 243 182 0 chr1 259040029 259040243 -23153421 + MIR SINE MIR 4 256 -6 1216 152 8 37 chr1 259041100 259041343 -23152321 + L1PA13 LINE L1 5926 6161 -2 2170 113 7 0 chr1 259041989 259042291 -23151373 - AluSx SINE Alu -8 304 1 2095 98 44 0 chr1 259043365 259043662 -23150002 - AluSg SINE Alu 0 310 1 2012 132 3 0 chr1 259043722 259044017 -23149647 - AluSx SINE Alu -16 296 1 201 194 56 174 chr1 259044816 259044960 -23148704 + MIR SINE MIR 136 262 0 2358 89 0 0 chr1 259045108 259045401 -23148263 + AluSq SINE Alu 5 297 -16 399 200 30 10 chr1 259045675 259045775 -23147889 + Charlie8 DNA MER1_type 87 188 -2229 630 267 148 18 chr1 259045984 259046201 -23147463 - MIR SINE MIR -1 261 17 1903 236 89 3 chr1 259046809 259047062 -23146602 + L1M4 LINE L1 2570 2800 -3346 2445 53 0 13 chr1 259047062 259047362 -23146302 - AluY SINE Alu -15 296 1 1903 236 89 3 chr1 259047362 259047727 -23145937 + L1M4 LINE L1 2800 3241 -2905 2272 171 23 7 chr1 259047750 259048190 -23145474 + L1M2 LINE L1 1988 2434 -4415 180 341 74 67 chr1 259049170 259049454 -23144210 - L2 LINE L2 -339 2975 2690 7286 120 14 4 chr1 259049455 259050857 -23142807 + L1MA2 LINE L1 4885 6304 0 505 30 15 0 chr1 259051880 259051946 -23141718 - MER41B LTR ERV1 -88 547 481 24 32 0 0 chr1 259052117 259052148 -23141516 + AT_rich Low_complexity Low_complexity 1 31 0 326 324 7 0 chr1 259052354 259052460 -23141204 + MIR SINE MIR 14 123 -85 216 97 0 0 chr1 259052528 259052559 -23141105 + (TTG)n Simple_repeat Simple_repeat 1 31 0 1661 160 7 39 chr1 259052614 259052921 -23140743 + AluJo SINE Alu 1 297 -15 290 240 0 0 chr1 259053983 259054058 -23139606 + L1MEc LINE L1 2226 2300 -4096 806 160 0 0 chr1 259054059 259054190 -23139474 + FLAM_C SINE Alu 2 132 -1 995 196 9 36 chr1 259054194 259054414 -23139250 + AluJo SINE Alu 85 298 -14 854 188 0 0 chr1 259054632 259054770 -23138894 + AluJb SINE Alu 145 282 -30 249 108 0 0 chr1 259054786 259054823 -23138841 + (TG)n Simple_repeat Simple_repeat 2 38 0 231 233 35 0 chr1 259054914 259055000 -23138664 - L1MC4 LINE L1 -1340 6702 6614 200 250 0 0 chr1 259055000 259055040 -23138624 + (TA)n Simple_repeat Simple_repeat 2 41 0 261 140 0 40 chr1 259055044 259055094 -23138570 + MER4-int LTR ERV1 1115 1162 -5436 325 348 17 0 chr1 259055094 259055209 -23138455 + (TA)n Simple_repeat Simple_repeat 2 118 0 324 289 23 12 chr1 259055213 259055386 -23138278 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 252 250 23 23 chr1 259055422 259055510 -23138154 - L1MC4 LINE L1 -1341 6701 6614 235 214 0 82 chr1 259055430 259055528 -23138136 + L1MC4 LINE L1 6614 6703 -1339 * 229 253 0 63 chr1 259055531 259055626 -23138038 + L1MC4 LINE L1 6615 6703 -1339 * 238 333 0 0 chr1 259055612 259055702 -23137962 - L1MC4 LINE L1 -1339 6703 6614 200 222 0 0 chr1 259055702 259055738 -23137926 + (CATATA)n Simple_repeat Simple_repeat 6 41 0 251 239 22 43 chr1 259055742 259055834 -23137830 - L1MC4 LINE L1 -1339 6703 6614 246 208 0 0 chr1 259055834 259055887 -23137777 + (TA)n Simple_repeat Simple_repeat 2 54 0 249 149 60 15 chr1 259055887 259055954 -23137710 - L1MCa LINE L1 -4362 2064 1995 197 194 0 32 chr1 259055961 259056023 -23137641 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 821 285 104 6 chr1 259056116 259056618 -23137046 + L1M4 LINE L1 2208 2758 -3388 313 295 11 21 chr1 259056622 259056717 -23136947 + MIR SINE MIR 64 157 -105 22 35 0 0 chr1 259057580 259057609 -23136055 + AT_rich Low_complexity Low_complexity 1 29 0 1815 48 20 4 chr1 259057609 259057857 -23135807 - L1MA2 LINE L1 0 6304 6053 2042 96 0 46 chr1 259058900 259059203 -23134461 + AluSq SINE Alu 1 289 -24 252 384 16 2 chr1 259059553 259059697 -23133967 + MIR SINE MIR 22 167 -65 547 211 82 86 chr1 259059698 259059835 -23133829 + L2 LINE L2 2543 2680 -634 638 138 101 0 chr1 259059835 259059944 -23133720 + L1PB3 LINE L1 6028 6147 -7 547 211 82 86 chr1 259059944 259060062 -23133602 + L2 LINE L2 2680 2797 -517 180 77 0 0 chr1 259060974 259061000 -23132664 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 969 151 13 0 chr1 259061003 259061155 -23132509 - AluSg/x SINE Alu -23 287 134 1082 62 0 0 chr1 259061225 259061353 -23132311 + AluSp SINE Alu 1 128 -185 1521 116 14 0 chr1 259061353 259061569 -23132095 + AluSp SINE Alu 84 302 -11 253 311 8 49 chr1 259061846 259061968 -23131696 + MER5A DNA MER1_type 55 171 -18 865 257 87 27 chr1 259062273 259062569 -23131095 + HAL1b LINE L1 836 1164 -184 333 0 0 0 chr1 259062569 259062606 -23131058 + (CA)n Simple_repeat Simple_repeat 2 38 0 865 257 87 27 chr1 259062606 259062713 -23130951 + HAL1b LINE L1 1164 1263 -85 3216 89 13 0 chr1 259064112 259064562 -23129102 - L1PA13 LINE L1 0 6163 5708 2107 122 0 0 chr1 259064577 259064898 -23128766 - AluSc SINE Alu 0 321 1 900 299 17 28 chr1 259065025 259065316 -23128348 + L3 LINE CR1 980 1267 -310 560 234 59 22 chr1 259065339 259065561 -23128103 - MER112 DNA MER1_type 0 260 31 2172 130 0 13 chr1 259067245 259067560 -23126104 - AluSx SINE Alu -1 311 1 29 47 0 0 chr1 259068775 259068818 -23124846 + AT_rich Low_complexity Low_complexity 1 43 0 237 359 215 8 chr1 259069276 259069658 -23124006 + L2 LINE L2 1893 2353 -961 484 345 100 37 chr1 259069771 259070384 -23123280 + L2 LINE L2 2621 3271 -1 924 136 14 0 chr1 259070872 259071019 -23122645 + L1M1 LINE L1 1642 1790 -5775 21621 160 43 12 chr1 259071099 259077686 -23115978 + L1MA3 LINE L1 10 6797 -768 2171 154 39 38 chr1 259077688 259078236 -23115428 - MLT2A2 LTR ERVL 0 554 1 1943 82 0 0 chr1 259078236 259078491 -23115173 + L1M1 LINE L1 5376 5630 -675 1259 170 5 5 chr1 259078492 259078710 -23114954 + LTR9B LTR ERV1 427 644 0 36407 39 5 0 chr1 259078783 259084262 -23109402 + L1PA4 LINE L1 649 6154 -1 3865 138 25 9 chr1 259084262 259084937 -23108727 + L1MA3 LINE L1 7039 7724 0 212 217 233 16 chr1 259085767 259085896 -23107768 + L3 LINE CR1 1222 1378 -199 995 164 30 82 chr1 259086545 259086776 -23106888 - MER20 DNA MER1_type 0 219 1 1221 221 34 37 chr1 259087942 259088240 -23105424 - AluJb SINE Alu -15 297 1 2182 116 0 0 chr1 259088372 259088665 -23104999 - AluSx SINE Alu -19 293 1 356 335 30 30 chr1 259089403 259089600 -23104064 - L1MC4a LINE L1 -1826 5982 5786 336 247 80 25 chr1 259089624 259089786 -23103878 - HAL1 LINE L1 -3 2504 2334 587 129 22 152 chr1 259089808 259089875 -23103789 - L1MA10 LINE L1 -4 6330 6256 1807 140 21 0 chr1 259089875 259090001 -23103663 + AluSx SINE Alu 1 123 -189 198 0 0 0 chr1 259090001 259090023 -23103641 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1807 140 21 0 chr1 259090023 259090181 -23103483 + AluSx SINE Alu 123 291 -21 1166 224 16 19 chr1 259090189 259090501 -23103163 - L1ME1 LINE L1 -45 6190 5880 15459 181 35 15 chr1 259090511 259095053 -23098611 - L1PA15 LINE L1 -21 6144 1499 5301 220 72 55 chr1 259095053 259096692 -23096972 - L1ME1 LINE L1 -775 5440 3758 2451 86 7 0 chr1 259096692 259096996 -23096668 - AluSq SINE Alu -7 306 1 5301 220 72 55 chr1 259096996 259097436 -23096228 - L1ME1 LINE L1 -2457 3758 3327 3545 245 67 21 chr1 259097489 259098700 -23094964 - L1ME1 LINE L1 -5043 1353 80 1661 193 80 19 chr1 259098700 259099073 -23094591 + MSTD LTR MaLR 1 396 0 3545 245 67 21 chr1 259099073 259099122 -23094542 - L1ME1 LINE L1 -6316 80 35 324 0 0 0 chr1 259099123 259099159 -23094505 + (TG)n Simple_repeat Simple_repeat 1 36 0 306 308 91 42 chr1 259099162 259099571 -23094093 - L1M4 LINE L1 -3056 3090 2662 201 255 0 0 chr1 259099594 259099641 -23094023 + (TATATG)n Simple_repeat Simple_repeat 6 52 0 29 0 0 62 chr1 259099696 259099716 -23093948 + AT_rich Low_complexity Low_complexity 1 21 -24 2295 79 0 10 chr1 259099716 259100006 -23093658 + AluY SINE Alu 1 287 -24 29 0 0 62 chr1 259100006 259100033 -23093631 + AT_rich Low_complexity Low_complexity 21 45 0 288 70 0 0 chr1 259101338 259101381 -23092283 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 39 0 0 0 chr1 259101381 259101420 -23092244 + AT_rich Low_complexity Low_complexity 1 39 0 854 266 22 34 chr1 259102525 259102792 -23090872 - L2 LINE L2 -812 2502 2239 423 0 0 0 chr1 259104036 259104083 -23089581 + (CA)n Simple_repeat Simple_repeat 1 47 0 711 175 0 0 chr1 259104151 259104265 -23089399 - FLAM_C SINE Alu -18 115 2 321 183 0 0 chr1 259106052 259106112 -23087552 - Charlie4 DNA MER1_type 0 1961 1902 605 230 7 27 chr1 259106130 259106278 -23087386 - Charlie4 DNA MER1_type -1816 145 1 2573 56 0 0 chr1 259106282 259106587 -23087077 + AluY SINE Alu 1 305 -6 1889 137 158 11 chr1 259107170 259107358 -23086306 - MSTA LTR MaLR 0 428 269 567 43 0 0 chr1 259107358 259107428 -23086236 + (GA)n Simple_repeat Simple_repeat 1 70 0 1889 137 158 11 chr1 259107428 259107612 -23086052 - MSTA LTR MaLR -159 269 1 309 358 98 5 chr1 259107845 259108038 -23085626 - MIR SINE MIR -44 218 8 266 283 39 38 chr1 259108446 259108571 -23085093 + MIR SINE MIR 30 152 -70 529 286 115 17 chr1 259108756 259109112 -23084552 + L1M4 LINE L1 3599 3989 -2157 * 724 58 4 14 chr1 259109107 259109201 -23084463 - L1HS LINE L1 -207 5947 5858 1602 59 5 0 chr1 259109201 259109402 -23084262 + L1PA6 LINE L1 5950 6154 0 724 58 4 14 chr1 259109402 259109427 -23084237 - L1HS LINE L1 -296 5858 5834 182 196 22 43 chr1 259109597 259109643 -23084021 - MIR SINE MIR -26 236 192 1947 242 70 60 chr1 259109647 259110526 -23083138 + L1M3e LINE L1 7 876 -6161 510 198 135 18 chr1 259110526 259110637 -23083027 - FLAM_A SINE Alu -8 125 2 1947 242 70 60 chr1 259110637 259110757 -23082907 + L1M3e LINE L1 876 2168 -4869 6765 168 12 0 chr1 259110775 259111921 -23081743 + L1PA12 LINE L1 1 1160 -6421 2763 20 0 0 chr1 259111922 259112227 -23081437 + AluYa5 SINE Alu 1 305 -6 2242 109 16 0 chr1 259112238 259112585 -23081079 + AluSc SINE Alu 1 352 0 3113 195 34 13 chr1 259112586 259113987 -23079677 + L1PA12 LINE L1 610 2880 -4694 452 333 7 14 chr1 259114337 259114478 -23079186 + MER5A DNA MER1_type 48 187 -2 863 141 32 0 chr1 259114888 259115044 -23078620 + L1MB4 LINE L1 6018 6178 -2 336 316 118 0 chr1 259115253 259115389 -23078275 - MIR SINE MIR -71 191 40 188 382 0 0 chr1 259115606 259115674 -23077990 + L2 LINE L2 2224 2291 -1023 230 118 0 0 chr1 259115900 259115934 -23077730 + MLT2B3 LTR ERVL 513 546 -8 259 59 0 0 chr1 259115981 259116015 -23077649 + L1PA12 LINE L1 575 608 -6973 19677 189 40 23 chr1 259116015 259116556 -23077108 + L1PA12 LINE L1 883 1413 -6193 2790 16 0 0 chr1 259116556 259116861 -23076803 + AluYa5 SINE Alu 1 305 -6 19677 189 40 23 chr1 259116861 259116872 -23076792 + L1PA12 LINE L1 1413 1422 -6184 2241 109 16 0 chr1 259116872 259117175 -23076489 + AluSc SINE Alu 1 308 -1 19677 189 40 23 chr1 259117175 259118886 -23074778 + L1PA12 LINE L1 1422 3102 -4504 2517 107 38 11 chr1 259118886 259119251 -23074413 + THE1C LTR MaLR 1 375 0 19677 189 40 23 chr1 259119251 259123610 -23070054 + L1PA12 LINE L1 3102 7596 -10 3313 93 8 2 chr1 259123610 259124080 -23069584 + L1PB2 LINE L1 5675 6149 -2 4350 165 57 31 chr1 259124089 259125340 -23068324 + L1MA7 LINE L1 4992 6265 -26 492 155 0 0 chr1 259125359 259125443 -23068221 + L1P LINE L1 5011 5094 -1052 365 186 82 10 chr1 259125503 259125600 -23068064 - MIR SINE MIR -54 208 105 2537 222 49 37 chr1 259125659 259126586 -23067078 - L1ME1 LINE L1 -3 6232 5282 183 162 0 0 chr1 259126646 259126683 -23066981 + T-rich Low_complexity Low_complexity 1 37 0 882 274 73 25 chr1 259126693 259127092 -23066572 - L1ME1 LINE L1 -4929 1467 1089 1211 209 90 19 chr1 259127092 259127413 -23066251 - MER2 DNA MER2_type 0 344 1 882 274 73 25 chr1 259127413 259127779 -23065885 - L1ME1 LINE L1 -5307 1089 665 1553 190 47 17 chr1 259128259 259128559 -23065105 - AluJb SINE Alu -3 309 1 245 211 0 0 chr1 259128581 259128638 -23065026 - L1ME1 LINE L1 -6294 102 46 763 167 42 0 chr1 259128791 259128911 -23064753 + FLAM_A SINE Alu 1 125 -8 39327 47 6 0 chr1 259128917 259135038 -23058626 + L1PA4 LINE L1 6 6155 0 598 222 79 0 chr1 259135043 259135169 -23058495 + AluJo SINE Alu 121 256 -56 320 242 112 74 chr1 259135620 259135835 -23057829 + L1M4 LINE L1 2142 2364 -3782 888 340 168 6 chr1 259136599 259137314 -23056350 + L2 LINE L2 2124 2954 -360 1064 291 82 28 chr1 259137332 259137793 -23055871 + MLT1J LTR MaLR 12 497 -14 327 253 0 48 chr1 259137994 259138077 -23055587 + L2 LINE L2 3235 3313 0 653 247 108 0 chr1 259138406 259138592 -23055072 - L2 LINE L2 -94 3219 3014 21 0 0 0 chr1 259138708 259138729 -23054935 + AT_rich Low_complexity Low_complexity 1 21 0 1994 170 9 12 chr1 259139454 259139789 -23053875 + MER1B DNA MER1_type 6 339 0 219 343 143 0 chr1 259140616 259140721 -23052943 - L2 LINE L2 -2 3270 3151 5372 228 60 45 chr1 259140721 259140746 -23052918 + L1MD3 LINE L1 4916 4939 -1207 623 37 12 0 chr1 259140746 259140828 -23052836 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 5372 228 60 45 chr1 259140828 259141219 -23052445 + L1MD3 LINE L1 4939 5323 -823 2286 91 3 16 chr1 259141219 259141527 -23052137 + AluSg1 SINE Alu 2 305 -4 5372 228 60 45 chr1 259141527 259142054 -23051610 + L1MD3 LINE L1 5323 5841 -305 1879 139 7 10 chr1 259142054 259142357 -23051307 - AluJb SINE Alu -10 302 1 5372 228 60 45 chr1 259142357 259142912 -23050752 + L1MD3 LINE L1 5841 4840 -1306 1828 157 71 0 chr1 259142912 259143237 -23050427 - MER7A DNA MER2_type 0 346 1 5372 228 60 45 chr1 259143237 259143811 -23049853 + L1MD3 LINE L1 4839 5403 -743 235 268 79 57 chr1 259143866 259144183 -23049481 + L1ME LINE L1 4741 5064 -1082 289 147 15 15 chr1 259144413 259144481 -23049183 + (TA)n Simple_repeat Simple_repeat 2 69 0 2780 218 73 26 chr1 259144483 259145295 -23048369 + L1MC4a LINE L1 6959 7808 0 297 241 115 0 chr1 259145543 259145630 -23048034 + HAL1 LINE L1 1449 1545 -962 811 132 0 83 chr1 259147280 259147424 -23046240 - FLAM_C SINE Alu 0 133 2 448 333 7 14 chr1 259147993 259148134 -23045530 + MER5A DNA MER1_type 48 187 -2 877 141 32 0 chr1 259148544 259148700 -23044964 + L1MB4 LINE L1 6018 6178 -2 338 316 118 0 chr1 259148909 259149045 -23044619 - MIR SINE MIR -71 191 40 188 382 0 0 chr1 259149262 259149330 -23044334 + L2 LINE L2 2224 2291 -1023 243 118 0 0 chr1 259149556 259149590 -23044074 + MLT2B3 LTR ERVL 513 546 -8 836 261 69 49 chr1 259149598 259149989 -23043675 + L1ME LINE L1 5381 5779 -391 352 233 45 15 chr1 259150096 259150229 -23043435 - L1ME4a LINE L1 -15 6106 5970 2241 68 0 7 chr1 259150333 259150611 -23043053 + AluY SINE Alu 1 276 -35 2383 78 0 0 chr1 259150740 259151034 -23042630 + AluY SINE Alu 1 294 -17 1239 122 0 0 chr1 259151034 259151206 -23042458 + AluY SINE Alu 133 304 -7 28 71 0 0 chr1 259151255 259151311 -23042353 + AT_rich Low_complexity Low_complexity 1 56 0 671 301 199 10 chr1 259151701 259152103 -23041561 + L2 LINE L2 2836 3313 0 24 32 0 0 chr1 259152176 259152207 -23041457 + AT_rich Low_complexity Low_complexity 1 31 0 228 135 0 0 chr1 259152353 259152390 -23041274 + (TAATG)n Simple_repeat Simple_repeat 4 40 0 587 285 37 28 chr1 259152439 259152653 -23041011 + L2 LINE L2 3094 3309 -4 575 152 0 11 chr1 259152689 259152781 -23040883 + Tigger2a DNA MER2_type 2 92 -342 7138 98 18 19 chr1 259152820 259153878 -23039786 - MER11C LTR ERVK -14 1057 1 2000 162 43 19 chr1 259153878 259154228 -23039436 + Tigger2a DNA MER2_type 86 444 0 30 69 0 0 chr1 259156078 259156136 -23037528 + AT_rich Low_complexity Low_complexity 1 58 0 723 222 21 7 chr1 259156655 259156799 -23036865 + FRAM SINE Alu 1 145 -31 249 385 37 0 chr1 259156825 259156934 -23036730 - MIR SINE MIR -149 113 1 23 33 0 0 chr1 259157489 259157519 -23036145 + AT_rich Low_complexity Low_complexity 1 30 0 247 265 239 0 chr1 259157675 259157792 -23035872 - MIR SINE MIR -22 240 96 790 208 125 6 chr1 259157922 259158090 -23035574 + MER58A DNA MER1_type 37 224 0 830 220 40 6 chr1 259158098 259158275 -23035389 - MER5A DNA MER1_type 0 189 7 186 309 86 0 chr1 259158337 259158418 -23035246 + MIR SINE MIR 28 115 -147 32 67 0 0 chr1 259158825 259158885 -23034779 + AT_rich Low_complexity Low_complexity 1 60 0 239 336 72 0 chr1 259159406 259159531 -23034133 + L2 LINE L2 1919 2052 -1262 358 151 0 0 chr1 259159716 259159769 -23033895 - MER96 DNA MER1_type? -91 84 32 576 284 97 7 chr1 259159869 259160554 -23033110 + L1MC/D LINE L1 4755 5504 -743 1948 208 86 70 chr1 259160817 259161374 -23032290 - MLT1E1 LTR MaLR -87 567 2 1359 201 12 16 chr1 259161731 259161752 -23031912 - MLT1E LTR MaLR 0 593 573 2019 127 32 37 chr1 259161752 259162129 -23031535 + THE1C LTR MaLR 1 375 0 1359 201 12 16 chr1 259162129 259162361 -23031303 - MLT1E LTR MaLR -20 573 341 884 184 87 27 chr1 259162365 259162550 -23031114 - MLT1E LTR MaLR -353 240 45 450 186 0 0 chr1 259162624 259162694 -23030970 - MER69 DNA AcHobo -107 70 1 24 0 0 0 chr1 259162733 259162757 -23030907 + AT_rich Low_complexity Low_complexity 1 24 0 728 247 59 41 chr1 259163452 259163671 -23029993 + MIR SINE MIR 2 224 -38 197 91 250 0 chr1 259163975 259164019 -23029645 - L2 LINE L2 -2 3270 3216 1048 348 113 38 chr1 259164333 259165492 -23028172 + L2 LINE L2 297 1542 -1772 556 259 82 32 chr1 259165625 259165932 -23027732 + L2 LINE L2 2454 2857 -457 2128 160 9 0 chr1 259166199 259166543 -23027121 - MER7A DNA MER2_type 0 346 2 425 352 101 41 chr1 259166620 259166958 -23026706 - L2 LINE L2 -1181 2133 1776 21 0 0 0 chr1 259168176 259168197 -23025467 + AT_rich Low_complexity Low_complexity 1 21 0 648 231 118 81 chr1 259168841 259169383 -23024281 - L1M4 LINE L1 -941 5205 4644 1980 89 0 12 chr1 259169456 259169713 -23023951 + AluSg SINE Alu 38 291 -19 249 276 31 79 chr1 259170264 259170391 -23023273 - L3 LINE CR1 -357 1220 1100 2409 48 41 3 chr1 259170904 259171198 -23022466 + AluY SINE Alu 1 305 -6 1693 189 26 41 chr1 259171479 259171517 -23022147 - MER58D DNA MER1_type -2034 386 349 2105 137 0 0 chr1 259171517 259171816 -23021848 + AluSx SINE Alu 1 299 -13 1693 189 26 41 chr1 259171816 259172168 -23021496 - MER58D DNA MER1_type -2071 349 2 248 169 17 17 chr1 259172335 259172394 -23021270 + HAL1b LINE L1 390 448 -900 322 310 99 29 chr1 259172426 259172597 -23021067 + HAL1 LINE L1 1583 1765 -742 301 203 0 0 chr1 259172605 259172674 -23020990 + HAL1b LINE L1 699 767 -581 23 33 0 0 chr1 259172874 259172904 -23020760 + AT_rich Low_complexity Low_complexity 1 30 0 230 252 26 61 chr1 259172924 259173039 -23020625 + HAL1b LINE L1 798 908 -440 355 259 109 78 chr1 259173378 259173497 -23020167 + L1MDa LINE L1 1575 1689 -4851 243 88 0 0 chr1 259173497 259173531 -23020133 + (CA)n Simple_repeat Simple_repeat 2 35 0 355 259 109 78 chr1 259173531 259173732 -23019932 + L1MDa LINE L1 1689 1905 -4635 404 362 36 36 chr1 259173911 259174248 -23019416 + L1MDa LINE L1 2200 2536 -4185 858 275 70 62 chr1 259174249 259175329 -23018335 + L1MDa LINE L1 2505 3593 -2947 382 259 84 46 chr1 259175361 259175624 -23018040 + L1M4 LINE L1 4574 4846 -1300 2358 96 0 0 chr1 259175625 259175926 -23017738 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr1 259176799 259176827 -23016837 + AT_rich Low_complexity Low_complexity 1 28 0 371 173 0 67 chr1 259176880 259176955 -23016709 - L2 LINE L2 -1 3312 3243 324 253 92 11 chr1 259177381 259177468 -23016196 + L2 LINE L2 2392 2485 -829 1171 193 116 11 chr1 259177483 259177836 -23015828 + Charlie2a DNA MER1_type 1327 1716 -1146 5609 81 0 0 chr1 259177837 259178578 -23015086 - L1PA8 LINE L1 -3 6169 5429 2513 68 3 0 chr1 259178708 259179015 -23014649 - AluY SINE Alu -2 309 2 850 318 185 12 chr1 259179292 259179773 -23013891 + L3 LINE CR1 400 963 -614 532 296 16 122 chr1 259179791 259180112 -23013552 + L3 LINE CR1 1269 1555 -22 1326 206 101 99 chr1 259180254 259180277 -23013387 - MLT1D LTR MaLR -8 497 476 2116 109 54 0 chr1 259180277 259180571 -23013093 - AluSq SINE Alu -3 310 1 1326 206 101 99 chr1 259180571 259181043 -23012621 - MLT1D LTR MaLR -29 476 1 1944 138 0 7 chr1 259181133 259181429 -23012235 + AluSx SINE Alu 9 302 -10 216 276 138 17 chr1 259181448 259181506 -23012158 + MIR SINE MIR 1 65 -197 192 250 0 0 chr1 259181544 259181584 -23012080 + MIR SINE MIR 223 262 0 3979 99 2 4 chr1 259181623 259182178 -23011486 - MER41A LTR ERV1 0 554 1 618 121 0 40 chr1 259182186 259182285 -23011379 + FLAM_C SINE Alu 40 134 -9 234 263 125 59 chr1 259183141 259183293 -23010371 + LTR41 LTR ERVL 1 162 -611 268 192 77 39 chr1 259183722 259183826 -23009838 + LTR41 LTR ERVL 660 767 -6 379 302 60 9 chr1 259183832 259183948 -23009716 - MIR SINE MIR -50 212 91 219 290 106 49 chr1 259184572 259184774 -23008890 + MIR SINE MIR 17 225 -37 2100 129 3 3 chr1 259185056 259185365 -23008299 - AluSx SINE Alu -3 309 1 1782 101 123 23 chr1 259186053 259186558 -23007106 + MER51A LTR ERV1 1 634 0 456 224 58 64 chr1 259188106 259188262 -23005402 + MER77 LTR ERV1 58 212 -393 947 275 113 52 chr1 259188278 259188839 -23004825 + MER77 LTR ERV1 155 814 -8 330 155 70 0 chr1 259189405 259189476 -23004188 - LTR23 LTR ERV1 0 437 362 10294 148 92 65 chr1 259189520 259192001 -23001663 - LTR49-int LTR ERV1 -1043 5288 2741 1462 203 55 64 chr1 259191984 259192147 -23001517 - LTR49-int LTR ERV1 -4502 1829 1666 * 243 0 0 0 chr1 259192147 259192174 -23001490 + (CA)n Simple_repeat Simple_repeat 2 28 0 1462 203 55 64 chr1 259192174 259192208 -23001456 - LTR49-int LTR ERV1 -4665 1666 1633 1440 163 100 26 chr1 259192208 259192478 -23001186 - AluJb SINE Alu -22 290 1 1462 203 55 64 chr1 259192478 259192751 -23000913 - LTR49-int LTR ERV1 -4698 1633 1362 329 324 59 0 chr1 259193027 259193163 -23000501 - MER34B LTR ERV1 -417 148 5 676 204 94 30 chr1 259194016 259194217 -22999447 - LTR56 LTR ERV1 0 445 232 1860 128 81 39 chr1 259194217 259194577 -22999087 + THE1C LTR MaLR 1 375 0 9179 139 49 8 chr1 259194579 259196095 -22997569 + THE1C-int LTR MaLR 3 1580 0 436 121 98 56 chr1 259196095 259196215 -22997449 + THE1C LTR MaLR 1 120 -244 673 93 0 0 chr1 259196571 259196657 -22997007 + AluSg/x SINE Alu 208 293 -16 979 139 43 26 chr1 259196659 259196855 -22996809 + THE1C LTR MaLR 191 375 0 494 227 100 74 chr1 259196856 259197085 -22996579 - LTR56 LTR ERV1 -210 235 1 1624 204 20 3 chr1 259197790 259198094 -22995570 - MLT1A1 LTR MaLR 0 365 57 1579 198 75 58 chr1 259198206 259198635 -22995029 + MLT1D LTR MaLR 1 436 -69 776 241 134 8 chr1 259198696 259198958 -22994706 - LTR33A LTR ERVL -225 298 4 634 276 43 65 chr1 259199298 259199620 -22994044 + LTR16C LTR ERVL 83 397 -94 208 281 30 13 chr1 259200015 259200093 -22993571 + MER5A DNA MER1_type 11 101 -88 330 26 0 0 chr1 259200095 259200134 -22993530 + (TC)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr1 259200133 259200154 -22993510 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 194 200 22 22 chr1 259200154 259200199 -22993465 + MER5A DNA MER1_type 143 187 -2 1840 10 0 0 chr1 259200680 259200878 -22992786 - AluYa5 SINE Alu -9 302 105 181 203 101 63 chr1 259201254 259201333 -22992331 - L2 LINE L2 -179 3134 3053 * 755 218 163 35 chr1 259201308 259201565 -22992099 + L2 LINE L2 3023 3312 -1 1282 126 30 38 chr1 259201927 259202189 -22991475 + L1M3 LINE L1 5255 5514 -666 * 4284 208 116 29 chr1 259202188 259202591 -22991073 + L1M4 LINE L1 2623 2989 -4576 2238 84 3 20 chr1 259202591 259202889 -22990775 + AluSp SINE Alu 1 293 -20 4284 208 116 29 chr1 259202889 259203701 -22989963 + L1M4 LINE L1 2989 3729 -3836 4122 69 28 24 chr1 259203701 259204140 -22989524 + LTR19B LTR ERV1 1 445 -135 1955 131 0 3 chr1 259204140 259204451 -22989213 + AluSg SINE Alu 1 310 0 4122 69 28 24 chr1 259204451 259204588 -22989076 + LTR19B LTR ERV1 445 580 0 4284 208 116 29 chr1 259204588 259204890 -22988774 + L1M4 LINE L1 3729 4003 -3562 252 0 0 0 chr1 259204890 259204918 -22988746 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 4284 208 116 29 chr1 259204918 259205431 -22988233 + L1M4 LINE L1 4003 4844 -2721 11477 172 13 0 chr1 259205438 259206021 -22987643 + L1PA14 LINE L1 3107 3681 -2480 207 0 0 0 chr1 259206021 259206044 -22987620 + (CA)n Simple_repeat Simple_repeat 2 24 0 11477 172 13 0 chr1 259206044 259208478 -22985186 + L1PA14 LINE L1 3681 6161 0 498 289 41 9 chr1 259208513 259208731 -22984933 + L1MEc LINE L1 1593 1817 -4579 1042 213 9 13 chr1 259209033 259209258 -22984406 - MER58A DNA MER1_type 0 224 1 3198 254 28 9 chr1 259209265 259210257 -22983407 + L1M4 LINE L1 5651 6661 -904 1215 164 20 30 chr1 259210260 259210565 -22983099 - L1M4 LINE L1 -3120 3026 2725 428 333 46 23 chr1 259210913 259211087 -22982577 + L2 LINE L2 3118 3295 -18 267 226 35 26 chr1 259211095 259211109 -22982555 - L1MA10 LINE L1 -2 6332 6319 3120 220 61 23 chr1 259211109 259211956 -22981708 - L1ME1 LINE L1 -5 6161 5288 7391 209 48 39 chr1 259211958 259212744 -22980920 + L1M4 LINE L1 3179 3956 -2190 1964 155 137 13 chr1 259212744 259213125 -22980539 + MSTA LTR MaLR 1 428 0 7391 209 48 39 chr1 259213125 259214425 -22979239 + L1M4 LINE L1 3956 5288 -858 631 198 27 0 chr1 259214425 259214536 -22979128 + FLAM_A SINE Alu 1 114 -19 7391 209 48 39 chr1 259214536 259214599 -22979065 + L1M4 LINE L1 5288 5349 -797 329 283 19 19 chr1 259214761 259214867 -22978797 - MIR SINE MIR -52 210 105 1464 143 27 9 chr1 259214887 259214993 -22978671 - AluJb SINE Alu -84 228 125 186 71 0 0 chr1 259214993 259215021 -22978643 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1464 143 27 9 chr1 259215021 259215138 -22978526 - AluJb SINE Alu -187 125 1 223 296 70 0 chr1 259215159 259215230 -22978434 - MIR SINE MIR -153 109 34 180 0 0 0 chr1 259215236 259215256 -22978408 + (TA)n Simple_repeat Simple_repeat 2 21 0 1635 191 22 0 chr1 259215256 259215534 -22978130 - AluJb SINE Alu -28 284 1 211 291 38 25 chr1 259215863 259215942 -22977722 + MIR SINE MIR 45 124 -138 22 56 0 0 chr1 259216037 259216073 -22977591 + AT_rich Low_complexity Low_complexity 1 36 0 371 206 161 45 chr1 259216384 259216539 -22977125 + MER53 DNA DNA 1 173 -16 225 241 89 40 chr1 259217066 259217290 -22976374 + L1MEc LINE L1 1982 2216 -3999 14229 212 41 18 chr1 259217327 259220070 -22973594 - L1PA16 LINE L1 0 6817 4139 2316 120 0 0 chr1 259220070 259220378 -22973286 - AluSx SINE Alu -4 308 1 14229 212 41 18 chr1 259220378 259222938 -22970726 - L1PA16 LINE L1 -2678 4139 1357 4968 211 25 7 chr1 259223472 259224341 -22969323 + L1M2 LINE L1 1675 2526 -4322 3235 85 40 135 chr1 259224341 259225015 -22968649 + LTR66 LTR ERVL 1 610 0 4968 211 25 7 chr1 259225015 259226166 -22967498 + L1M2 LINE L1 2526 3734 -3114 29373 114 41 74 chr1 259226177 259231856 -22961808 + L1PA7 LINE L1 5 5490 -664 1092 76 0 0 chr1 259231856 259231988 -22961676 + AluY SINE Alu 1 132 -179 4793 78 35 0 chr1 259231998 259232654 -22961010 + L1PA7 LINE L1 5476 6154 0 320 204 296 10 chr1 259232657 259232755 -22960909 + MER5A DNA MER1_type 61 186 -3 201 196 0 0 chr1 259232794 259232845 -22960819 + (TA)n Simple_repeat Simple_repeat 1 51 0 5610 152 19 33 chr1 259233536 259234622 -22959042 - MER11C LTR ERVK 0 1071 1 23 0 0 0 chr1 259234884 259234907 -22958757 + AT_rich Low_complexity Low_complexity 1 23 0 279 371 49 7 chr1 259235223 259235366 -22958298 - MER5A DNA MER1_type -1 188 40 180 306 126 36 chr1 259236361 259236472 -22957192 + L2 LINE L2 3178 3298 -15 186 265 20 0 chr1 259236909 259236958 -22956706 - L2 LINE L2 -1 3312 3263 219 272 185 0 chr1 259237437 259237529 -22956135 + L3b LINE CR1 1354 1462 -121 350 244 228 8 chr1 259238580 259238703 -22954961 + MER69A DNA AcHobo 13 162 -15 1982 224 122 6 chr1 259239231 259239705 -22953959 + L1MDa LINE L1 27 555 -5985 3885 147 99 123 chr1 259239707 259239888 -22953776 + L1MDa LINE L1 1277 1461 -5079 721 160 0 30 chr1 259239888 259240019 -22953645 + AluSg/x SINE Alu 181 307 -3 3885 147 99 123 chr1 259240019 259241074 -22952590 + L1MDa LINE L1 1461 2610 -3930 898 95 8 8 chr1 259241078 259241204 -22952460 + AluSp SINE Alu 2 127 -186 1087 122 0 6 chr1 259241304 259241491 -22952173 + AluSp SINE Alu 130 315 0 3691 225 68 10 chr1 259241496 259242009 -22951655 + L1MDa LINE L1 2605 3087 -3453 243 0 0 0 chr1 259242009 259242036 -22951628 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3691 225 68 10 chr1 259242036 259242730 -22950934 + L1MDa LINE L1 3087 3882 -2658 1379 47 0 0 chr1 259242732 259242901 -22950763 - L1PA3 LINE L1 -192 5963 5795 261 26 26 0 chr1 259242887 259242925 -22950739 + L1PA3 LINE L1 6112 6150 -5 * 425 259 0 0 chr1 259242952 259243060 -22950604 + L1MDa LINE L1 3869 3976 -2564 * 10465 230 46 24 chr1 259243056 259243213 -22950451 + L1M3b LINE L1 1 153 -6197 318 26 0 0 chr1 259243213 259243252 -22950412 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 10465 230 46 24 chr1 259243252 259244224 -22949440 + L1M3b LINE L1 153 1102 -5248 1471 189 63 25 chr1 259244224 259244510 -22949154 + AluJb SINE Alu 3 299 -13 10465 230 46 24 chr1 259244510 259248401 -22945263 + L1M3b LINE L1 1102 4810 -1540 619 309 24 16 chr1 259248505 259248751 -22944913 - L1M3de LINE L1 -4950 1703 1456 688 313 23 65 chr1 259248841 259249225 -22944439 - L1M3de LINE L1 -5515 1138 771 296 169 221 0 chr1 259249243 259249320 -22944344 + L1MB3 LINE L1 6083 6176 -7 196 239 22 0 chr1 259250148 259250194 -22943470 - MIR SINE MIR -17 245 199 498 243 41 124 chr1 259250233 259250500 -22943164 + MIR SINE MIR 12 256 -6 383 300 103 47 chr1 259251190 259251530 -22942134 + L1MEc LINE L1 2102 2460 -3936 348 189 0 0 chr1 259251544 259251618 -22942046 + (TA)n Simple_repeat Simple_repeat 2 75 0 638 283 100 51 chr1 259251847 259251969 -22941695 + L1MEc LINE L1 2854 2969 -3246 1472 121 24 136 chr1 259251969 259252078 -22941586 + AluJb SINE Alu 2 122 -180 1927 131 27 0 chr1 259252078 259252375 -22941289 + AluSx SINE Alu 7 311 -1 1472 121 24 136 chr1 259252375 259252604 -22941060 + AluJb SINE Alu 122 302 0 638 283 100 51 chr1 259252604 259252891 -22940773 + L1MEc LINE L1 2969 3283 -2932 1036 322 116 13 chr1 259252953 259253922 -22939742 + L1MEc LINE L1 3442 4509 -1706 651 233 119 0 chr1 259253968 259254144 -22939520 - MIR SINE MIR -10 252 56 566 310 109 30 chr1 259254172 259255172 -22938492 + L1MEc LINE L1 4563 5636 -745 1623 74 135 0 chr1 259255282 259255526 -22938138 + AluSc SINE Alu 1 277 -32 215 111 0 44 chr1 259255531 259255576 -22938088 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1319 87 0 0 chr1 259255682 259255843 -22937821 - AluSx SINE Alu -151 161 1 24 32 0 0 chr1 259256226 259256257 -22937407 + AT_rich Low_complexity Low_complexity 1 31 0 226 295 137 0 chr1 259256420 259256515 -22937149 - MIR SINE MIR -6 256 149 1900 163 0 3 chr1 259257087 259257388 -22936276 + AluSx SINE Alu 1 300 -12 2022 148 0 0 chr1 259257427 259257724 -22935940 + AluSx SINE Alu 1 297 -15 1185 176 0 0 chr1 259258760 259258948 -22934716 + AluJb SINE Alu 1 188 -124 398 295 189 53 chr1 259259483 259259880 -22933784 - MARNA DNA Mariner -99 487 37 2202 90 3 7 chr1 259259882 259260192 -22933472 + AluSg1 SINE Alu 1 309 0 251 304 215 6 chr1 259260200 259260358 -22933306 + MIR3 SINE MIR 11 201 -7 3646 219 17 7 chr1 259260769 259261654 -22932010 + L1M4c LINE L1 971 1864 -4520 334 244 22 0 chr1 259261684 259261774 -22931890 + L1M4c LINE L1 2016 2107 -4277 1309 149 14 10 chr1 259261776 259261984 -22931680 - AluJo SINE Alu -19 293 85 5761 230 51 8 chr1 259261985 259263851 -22929813 + L1M4c LINE L1 2098 4047 -2335 477 91 45 100 chr1 259263851 259263917 -22929747 + L1MB2 LINE L1 6065 6124 -47 1692 156 56 10 chr1 259263917 259264205 -22929459 + AluSx SINE Alu 1 301 -11 477 91 45 100 chr1 259264205 259264248 -22929416 + L1MB2 LINE L1 6124 6168 -3 26 30 0 0 chr1 259264283 259264316 -22929348 + AT_rich Low_complexity Low_complexity 1 33 0 483 272 81 33 chr1 259265228 259265522 -22928142 - L1ME LINE L1 -433 5688 5374 525 314 160 0 chr1 259267290 259267478 -22926186 - MIR SINE MIR -44 218 1 810 180 42 69 chr1 259267846 259268035 -22925629 - MLT1A1 LTR MaLR 0 365 182 658 145 131 55 chr1 259268052 259268197 -22925467 - FRAM SINE Alu -2 174 19 246 150 0 0 chr1 259268297 259268337 -22925327 - MLT1A1 LTR MaLR -325 40 1 22 70 0 0 chr1 259268355 259268398 -22925266 + AT_rich Low_complexity Low_complexity 1 43 0 963 205 71 58 chr1 259268431 259268686 -22924978 - L1MB4 LINE L1 -2 6178 5924 540 286 31 31 chr1 259268686 259268913 -22924751 - L1MC3 LINE L1 -1896 5889 5663 616 243 153 34 chr1 259268925 259269160 -22924504 + Charlie8 DNA MER1_type 70 332 -2085 206 238 0 0 chr1 259269824 259269866 -22923798 + L2 LINE L2 3201 3242 -71 30 45 0 0 chr1 259270310 259270354 -22923310 + AT_rich Low_complexity Low_complexity 1 44 0 287 220 0 0 chr1 259270415 259270474 -22923190 + MER116 DNA Mariner 20 78 -2 1882 153 26 40 chr1 259271403 259271782 -22921882 + THE1C LTR MaLR 2 375 0 490 295 39 0 chr1 259272429 259272558 -22921106 - MLT1J LTR MaLR -207 304 171 2959 99 18 5 chr1 259272571 259273006 -22920658 - L1PA10 LINE L1 -11 6157 5717 285 273 39 26 chr1 259273227 259273304 -22920360 - MIR SINE MIR -181 81 4 650 192 8 0 chr1 259274458 259274578 -22919086 + FLAM_C SINE Alu 1 121 -22 216 0 0 0 chr1 259274578 259274602 -22919062 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 376 308 19 0 chr1 259274733 259274840 -22918824 - L2 LINE L2 -2 3270 3162 2381 74 0 0 chr1 259275013 259275310 -22918354 + AluSx SINE Alu 1 297 -15 357 115 79 10 chr1 259275310 259275392 -22918272 + L1M3 LINE L1 5392 5487 -667 207 214 0 18 chr1 259275713 259275769 -22917895 + T-rich Low_complexity Low_complexity 1 55 0 992 175 234 107 chr1 259275776 259276131 -22917533 - L1MC4 LINE L1 -6 8036 7613 626 242 0 0 chr1 259276131 259276251 -22917413 - FLAM_A SINE Alu -10 123 4 992 175 234 107 chr1 259276251 259276335 -22917329 - L1MC4 LINE L1 -429 7613 7541 1552 178 0 0 chr1 259276335 259276599 -22917065 + MER2 DNA MER2_type 1 264 -81 514 165 0 0 chr1 259276650 259276729 -22916935 + MER2 DNA MER2_type 267 345 0 1066 197 5 0 chr1 259276729 259276927 -22916737 - L1MC4 LINE L1 -500 7542 7344 1191 208 87 6 chr1 259276928 259277240 -22916424 - L1MC4 LINE L1 -750 7292 6956 188 261 0 0 chr1 259277408 259277454 -22916210 + MIR3 SINE MIR 157 202 -6 28 0 0 0 chr1 259277480 259277508 -22916156 + AT_rich Low_complexity Low_complexity 1 28 0 228 298 53 58 chr1 259278858 259279046 -22914618 + L1ME LINE L1 5458 5644 -477 261 320 77 13 chr1 259279244 259279400 -22914264 + LTR40a LTR ERVL 2 167 -352 2050 96 0 46 chr1 259329661 259329964 -22863700 + AluSq SINE Alu 1 289 -24 250 384 16 2 chr1 259330314 259330458 -22863206 + MIR SINE MIR 22 167 -65 564 211 82 86 chr1 259330459 259330596 -22863068 + L2 LINE L2 2543 2680 -634 633 138 101 0 chr1 259330596 259330705 -22862959 + L1PB3 LINE L1 6028 6147 -7 564 211 82 86 chr1 259330705 259330823 -22862841 + L2 LINE L2 2680 2797 -517 180 77 0 0 chr1 259331735 259331761 -22861903 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 969 151 13 0 chr1 259331764 259331916 -22861748 - AluSg/x SINE Alu -23 287 134 1086 62 0 0 chr1 259331986 259332114 -22861550 + AluSp SINE Alu 1 128 -185 1546 116 14 0 chr1 259332114 259332330 -22861334 + AluSp SINE Alu 84 302 -11 256 311 8 49 chr1 259332607 259332729 -22860935 + MER5A DNA MER1_type 55 171 -18 753 258 83 28 chr1 259333034 259333330 -22860334 + HAL1b LINE L1 836 1161 -187 333 0 0 0 chr1 259333330 259333367 -22860297 + (CA)n Simple_repeat Simple_repeat 2 38 0 753 258 83 28 chr1 259333367 259333469 -22860195 + HAL1b LINE L1 1161 1256 -92 3208 89 13 0 chr1 259334873 259335323 -22858341 - L1PA13 LINE L1 0 6163 5708 2124 122 0 0 chr1 259335338 259335659 -22858005 - AluSc SINE Alu 0 321 1 894 299 17 28 chr1 259335786 259336077 -22857587 + L3 LINE CR1 980 1267 -310 504 243 59 22 chr1 259336100 259336322 -22857342 - MER112 DNA MER1_type 0 260 31 268 169 221 0 chr1 259337748 259337825 -22855839 - L1MB3 LINE L1 -7 6176 6083 581 313 23 65 chr1 259337843 259338227 -22855437 + L1M4c LINE L1 421 788 -5515 3572 223 18 25 chr1 259338313 259339505 -22854159 + L1M4c LINE L1 801 1864 -4520 301 244 22 0 chr1 259339535 259339625 -22854039 + L1M4c LINE L1 2016 2107 -4277 1349 149 14 10 chr1 259339627 259339835 -22853829 - AluJo SINE Alu -19 293 85 5215 230 51 8 chr1 259339836 259341702 -22851962 + L1M4c LINE L1 2098 4047 -2335 458 91 45 100 chr1 259341702 259341768 -22851896 + L1MB2 LINE L1 6065 6124 -47 1745 156 56 10 chr1 259341768 259342056 -22851608 + AluSx SINE Alu 1 301 -11 458 91 45 100 chr1 259342056 259342099 -22851565 + L1MB2 LINE L1 6124 6168 -3 26 30 0 0 chr1 259342134 259342167 -22851497 + AT_rich Low_complexity Low_complexity 1 33 0 431 261 79 9 chr1 259343081 259343259 -22850405 - L1MC/D LINE L1 -459 5662 5506 511 314 160 0 chr1 259345141 259345329 -22848335 - MIR SINE MIR -44 218 1 758 180 42 69 chr1 259345697 259345886 -22847778 - MLT1A1 LTR MaLR 0 365 182 962 162 137 39 chr1 259345903 259346107 -22847557 - AluJo SINE Alu -2 310 87 742 182 14 0 chr1 259346115 259346263 -22847401 - MLT1A1 LTR MaLR -215 150 1 22 70 0 0 chr1 259346281 259346324 -22847340 + AT_rich Low_complexity Low_complexity 1 43 0 888 183 115 13 chr1 259346357 259346612 -22847052 - L1MB4 LINE L1 -2 6178 5924 426 286 26 26 chr1 259346612 259346839 -22846825 - L1MC2 LINE L1 -455 5889 5663 559 158 221 0 chr1 259346851 259346978 -22846686 + Charlie8 DNA MER1_type 81 235 -2182 219 211 0 0 chr1 259347750 259347788 -22845876 + L2 LINE L2 3201 3238 -75 30 45 0 0 chr1 259348236 259348280 -22845384 + AT_rich Low_complexity Low_complexity 1 44 0 267 220 0 0 chr1 259348341 259348400 -22845264 + MER116 DNA Mariner 20 78 -2 1906 153 26 40 chr1 259349329 259349708 -22843956 + THE1C LTR MaLR 2 375 0 447 295 39 0 chr1 259350355 259350484 -22843180 - MLT1J LTR MaLR -207 304 171 2978 99 18 5 chr1 259350497 259350932 -22842732 - L1PA10 LINE L1 -11 6157 5717 289 273 39 26 chr1 259351153 259351230 -22842434 - MIR SINE MIR -181 81 4 676 192 8 0 chr1 259352384 259352504 -22841160 + FLAM_C SINE Alu 1 121 -22 216 0 0 0 chr1 259352504 259352528 -22841136 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 386 308 19 0 chr1 259352659 259352766 -22840898 - L2 LINE L2 -2 3270 3162 2424 74 0 0 chr1 259352939 259353236 -22840428 + AluSx SINE Alu 1 297 -15 339 102 0 0 chr1 259353236 259353285 -22840379 + L1M3 LINE L1 5392 5440 -743 207 214 0 18 chr1 259353639 259353695 -22839969 + T-rich Low_complexity Low_complexity 1 55 0 846 175 234 107 chr1 259353702 259354057 -22839607 - L1MC4 LINE L1 -6 8036 7613 646 242 0 0 chr1 259354057 259354177 -22839487 - FLAM_A SINE Alu -10 123 4 846 175 234 107 chr1 259354177 259354261 -22839403 - L1MC4 LINE L1 -429 7613 7541 1458 178 0 0 chr1 259354261 259354525 -22839139 + MER2 DNA MER2_type 1 264 -81 487 165 0 0 chr1 259354576 259354655 -22839009 + MER2 DNA MER2_type 267 345 0 997 197 5 0 chr1 259354655 259354853 -22838811 - L1MC4 LINE L1 -500 7542 7344 1080 208 87 6 chr1 259354854 259355166 -22838498 - L1MC4 LINE L1 -750 7292 6956 185 261 0 0 chr1 259355334 259355380 -22838284 + MIR3 SINE MIR 157 202 -6 28 0 0 0 chr1 259355406 259355434 -22838230 + AT_rich Low_complexity Low_complexity 1 28 0 331 298 53 58 chr1 259356784 259356972 -22836692 + L1ME LINE L1 5458 5644 -477 339 25 0 0 chr1 259357652 259357692 -22835972 + (CA)n Simple_repeat Simple_repeat 1 40 0 200 119 0 24 chr1 259357702 259357744 -22835920 + (TA)n Simple_repeat Simple_repeat 2 42 0 234 114 0 0 chr1 259357788 259357823 -22835841 + LTR40b LTR ERVL 421 455 -7 196 239 22 0 chr1 259358730 259358776 -22834888 - MIR SINE MIR -17 245 199 508 243 41 124 chr1 259358815 259359082 -22834582 + MIR SINE MIR 12 256 -6 383 308 182 3 chr1 259359772 259360080 -22833584 + L1MEc LINE L1 2102 2464 -3932 348 189 0 0 chr1 259360126 259360200 -22833464 + (TA)n Simple_repeat Simple_repeat 2 75 0 634 283 100 51 chr1 259360429 259360551 -22833113 + L1MEc LINE L1 2854 2969 -3246 1525 121 24 136 chr1 259360551 259360660 -22833004 + AluJb SINE Alu 2 122 -180 1973 131 27 0 chr1 259360660 259360957 -22832707 + AluSx SINE Alu 7 311 -1 1525 121 24 136 chr1 259360957 259361186 -22832478 + AluJb SINE Alu 122 302 0 634 283 100 51 chr1 259361186 259361473 -22832191 + L1MEc LINE L1 2969 3283 -2932 717 322 116 13 chr1 259361535 259362504 -22831160 + L1MEc LINE L1 3442 4509 -1706 643 233 119 0 chr1 259362550 259362726 -22830938 - MIR SINE MIR -10 252 56 330 305 94 36 chr1 259362754 259363754 -22829910 + L1MEc LINE L1 4563 5633 -602 1643 74 135 0 chr1 259363864 259364108 -22829556 + AluSc SINE Alu 1 277 -32 215 111 0 44 chr1 259364113 259364158 -22829506 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 221 228 35 18 chr1 259364185 259364242 -22829422 + GA-rich Low_complexity Low_complexity 4 61 0 1491 161 66 4 chr1 259364490 259364764 -22828900 + AluJb SINE Alu 1 291 -21 392 93 29 43 chr1 259364792 259364917 -22828747 + (TA)n Simple_repeat Simple_repeat 2 126 -12 2222 110 3 0 chr1 259364917 259365207 -22828457 - AluSx SINE Alu -21 291 1 392 93 29 43 chr1 259365207 259365220 -22828444 + (TA)n Simple_repeat Simple_repeat 126 138 0 24 32 0 0 chr1 259365590 259365621 -22828043 + AT_rich Low_complexity Low_complexity 1 31 0 220 295 137 0 chr1 259365784 259365879 -22827785 - MIR SINE MIR -6 256 149 1960 163 0 3 chr1 259366451 259366752 -22826912 + AluSx SINE Alu 1 300 -12 2079 148 0 0 chr1 259366791 259367088 -22826576 + AluSx SINE Alu 1 297 -15 1224 176 0 0 chr1 259368124 259368312 -22825352 + AluJb SINE Alu 1 188 -124 310 320 67 0 chr1 259368849 259368999 -22824665 - MARNA DNA Mariner -101 485 326 263 213 33 0 chr1 259369183 259369244 -22824420 - MARNA DNA Mariner -487 99 37 2253 90 3 7 chr1 259369246 259369556 -22824108 + AluSg1 SINE Alu 1 309 0 269 298 215 6 chr1 259369564 259369722 -22823942 + MIR3 SINE MIR 11 201 -7 2273 107 10 10 chr1 259370162 259370471 -22823193 - AluSx SINE Alu -3 309 1 1752 97 24 7 chr1 259370479 259370767 -22822897 - L1MA5A LINE L1 -3 6294 6002 1507 186 17 69 chr1 259371563 259371923 -22821741 + MER58B DNA MER1_type 1 341 0 550 165 180 46 chr1 259372339 259372533 -22821131 + HsTC2 DNA Tc2 19 238 -1660 3567 174 48 22 chr1 259372786 259373071 -22820593 + L1MB8 LINE L1 5376 5652 -526 1970 126 7 26 chr1 259373071 259373373 -22820291 + AluSq SINE Alu 1 296 -17 3567 174 48 22 chr1 259373373 259373864 -22819800 + L1MB8 LINE L1 5652 6172 -6 400 261 0 0 chr1 259373976 259374068 -22819596 - MIR3 SINE MIR -8 200 109 4571 55 3 0 chr1 259374394 259375012 -22818652 - L1PA5 LINE L1 -3006 3140 2521 17920 49 1 7 chr1 259375013 259378055 -22815609 + L1PA5 LINE L1 3130 6166 0 244 332 159 17 chr1 259378098 259378399 -22815265 - L2 LINE L2 -1080 2234 1891 1850 112 72 7 chr1 259379426 259379702 -22813962 - AluSx SINE Alu -18 294 1 716 270 39 52 chr1 259379764 259379997 -22813667 - MIR SINE MIR -9 253 24 468 298 0 46 chr1 259381050 259381181 -22812483 + L2 LINE L2 3148 3272 0 720 287 39 1 chr1 259381365 259381567 -22812097 - MIR SINE MIR -22 240 34 1266 100 0 18 chr1 259381964 259382134 -22811530 + AluJb SINE Alu 131 297 -15 358 288 79 13 chr1 259382153 259382382 -22811282 - L2 LINE L2 -703 2611 2368 225 65 0 0 chr1 259383129 259383160 -22810504 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 194 239 22 0 chr1 259383172 259383218 -22810446 - L2 LINE L2 -13 3259 3213 543 169 29 0 chr1 259383776 259383892 -22809772 + L1M4 LINE L1 5373 5491 -671 1421 152 92 97 chr1 259383912 259384261 -22809403 - MER7A DNA MER2_type 0 346 2 811 190 62 22 chr1 259384272 259384451 -22809213 - L1ME LINE L1 -546 5624 5439 2602 55 3 6 chr1 259384452 259384764 -22808900 - AluY SINE Alu 0 311 1 2185 121 0 3 chr1 259385251 259385557 -22808107 + AluSx SINE Alu 1 305 -7 2035 125 14 0 chr1 259387264 259387551 -22806113 + AluSx SINE Alu 1 291 -21 1882 138 13 26 chr1 259387560 259387865 -22805799 + AluJo SINE Alu 1 301 -11 265 307 51 1 chr1 259388051 259388163 -22805501 - MIR SINE MIR -66 142 37 578 104 0 0 chr1 259392309 259392386 -22801278 - AluJ/FLAM SINE Alu -234 78 2 2118 156 25 47 chr1 259392833 259393238 -22800426 + MSTD LTR MaLR 1 396 0 196 282 0 0 chr1 259393775 259393814 -22799850 + L2 LINE L2 3179 3217 -96 21 0 0 0 chr1 259393903 259393924 -22799740 + AT_rich Low_complexity Low_complexity 1 21 0 276 318 45 23 chr1 259394722 259394854 -22798810 + L2 LINE L2 3136 3270 -2 2461 114 28 20 chr1 259395035 259395431 -22798233 - L1MA5A LINE L1 -10 6287 5889 22 0 0 0 chr1 259396579 259396601 -22797063 + AT_rich Low_complexity Low_complexity 1 22 0 1654 265 57 18 chr1 259397562 259398163 -22795501 + L1MC4a LINE L1 7185 7808 0 2334 109 0 0 chr1 259398925 259399236 -22794428 - AluSx SINE Alu -1 311 1 267 312 101 15 chr1 259401724 259401923 -22791741 - L2 LINE L2 0 3313 3098 189 171 0 0 chr1 259402503 259402538 -22791126 + (CATA)n Simple_repeat Simple_repeat 1 35 0 295 278 41 0 chr1 259402591 259402688 -22790976 + L1ME LINE L1 5571 5671 -450 1992 113 41 20 chr1 259403049 259403341 -22790323 + AluJb SINE Alu 3 300 -12 1792 170 52 6 chr1 259403780 259404109 -22789555 - MER2 DNA MER2_type 0 344 1 29 0 0 0 chr1 259404110 259404139 -22789525 + AT_rich Low_complexity Low_complexity 1 29 0 635 220 0 15 chr1 259404963 259405095 -22788569 + FLAM_A SINE Alu 1 130 -12 189 132 0 0 chr1 259405500 259405538 -22788126 + (A)n Simple_repeat Simple_repeat 1 38 0 377 271 139 0 chr1 259406166 259406332 -22787332 + L2 LINE L2 2875 3063 -250 21 0 0 0 chr1 259406586 259406607 -22787057 + AT_rich Low_complexity Low_complexity 1 21 0 2309 91 3 7 chr1 259407152 259407450 -22786214 + AluSq SINE Alu 1 297 -16 25 0 0 0 chr1 259407905 259407930 -22785734 + AT_rich Low_complexity Low_complexity 1 25 0 551 168 178 96 chr1 259407938 259408241 -22785423 + L1ME4a LINE L1 5510 5837 -284 2472 57 0 0 chr1 259408339 259408622 -22785042 + AluY SINE Alu 2 284 -27 867 234 54 9 chr1 259409898 259410120 -22783544 + MER58 DNA MER1_type 2 233 -2187 654 236 174 25 chr1 259410171 259410447 -22783217 + MER5C DNA MER1_type 8 324 0 299 318 84 0 chr1 259410821 259410928 -22782736 + L2 LINE L2 3134 3249 -23 1343 108 5 16 chr1 259413382 259413576 -22780088 + AluSq SINE Alu 111 302 -11 1851 142 7 0 chr1 259414539 259414813 -22778851 - AluSx SINE Alu -6 306 31 8878 133 107 19 chr1 259414813 259416385 -22777279 + pTR5 LTR ERV1 583 2438 0 286 310 108 25 chr1 259416589 259416747 -22776917 - MIR SINE MIR 0 262 92 455 194 111 61 chr1 259416800 259416873 -22776791 + MER5A DNA MER1_type 1 69 -120 2210 142 0 0 chr1 259416873 259417184 -22776480 + AluSx SINE Alu 1 311 -1 455 194 111 61 chr1 259417184 259417290 -22776374 + MER5A DNA MER1_type 69 189 0 24 53 0 0 chr1 259417688 259417726 -22775938 + AT_rich Low_complexity Low_complexity 1 38 0 228 129 29 0 chr1 259418339 259418387 -22775277 + MIR SINE MIR 113 161 -101 2310 110 7 0 chr1 259418391 259418692 -22774972 + AluSq SINE Alu 1 303 -10 216 339 65 30 chr1 259420190 259420395 -22773269 - MIR3 SINE MIR -38 224 15 739 147 77 63 chr1 259421360 259421637 -22772027 + MLT1A1 LTR MaLR 3 372 -24 2550 159 36 60 chr1 259422181 259422273 -22771391 + MER67A LTR ERV1 3 96 -447 2192 96 7 14 chr1 259422273 259422565 -22771099 + AluSx SINE Alu 1 290 -22 2550 159 36 60 chr1 259422565 259422878 -22770786 + MER67A LTR ERV1 96 394 -149 2326 103 0 0 chr1 259422878 259423169 -22770495 - AluSg SINE Alu -19 291 1 2550 159 36 60 chr1 259423169 259423316 -22770348 + MER67A LTR ERV1 394 543 0 939 96 37 0 chr1 259423922 259424058 -22769606 - FRAM SINE Alu -13 163 23 540 217 62 64 chr1 259424161 259424353 -22769311 + MIR SINE MIR 1 189 -63 2064 110 0 4 chr1 259426212 259426484 -22767180 + AluSg SINE Alu 13 283 -27 432 0 0 0 chr1 259426484 259426532 -22767132 + (CA)n Simple_repeat Simple_repeat 2 49 0 498 278 50 11 chr1 259426984 259427164 -22766500 - MIR SINE MIR -51 211 25 2296 113 6 0 chr1 259427441 259427752 -22765912 - AluSq SINE Alu 0 313 1 946 169 19 6 chr1 259427873 259428033 -22765631 - FRAM SINE Alu -14 162 1 2363 82 0 0 chr1 259428042 259428348 -22765316 - AluSx SINE Alu 0 309 4 2098 111 21 0 chr1 259428986 259429275 -22764389 - AluSq SINE Alu -18 295 1 2282 128 0 0 chr1 259432611 259432923 -22760741 - AluSx SINE Alu 0 312 1 385 252 29 0 chr1 259433324 259433427 -22760237 - MIR SINE MIR -97 165 60 2439 93 0 6 chr1 259433896 259434209 -22759455 - AluSx SINE Alu -1 311 1 708 254 156 13 chr1 259434642 259435096 -22758568 + L2 LINE L2 2797 3311 -2 24 0 0 0 chr1 259435370 259435394 -22758270 + AT_rich Low_complexity Low_complexity 1 24 0 2649 145 29 22 chr1 259436115 259436482 -22757182 + L1MB3 LINE L1 5688 6060 -123 2432 90 3 0 chr1 259436482 259436792 -22756872 + AluY SINE Alu 1 311 0 2649 145 29 22 chr1 259436792 259436914 -22756750 + L1MB3 LINE L1 6060 6180 -3 640 286 39 51 chr1 259437022 259437059 -22756605 + MIR SINE MIR 4 40 -222 2571 103 22 6 chr1 259437059 259437417 -22756247 - THE1B LTR MaLR 0 364 1 640 286 39 51 chr1 259437417 259437634 -22756030 + MIR SINE MIR 40 255 -7 305 263 175 22 chr1 259437856 259437993 -22755671 - L2 LINE L2 0 3313 3156 371 253 202 45 chr1 259438215 259438413 -22755251 + L2 LINE L2 2994 3222 -91 1685 166 54 24 chr1 259438915 259439210 -22754454 + AluJb SINE Alu 1 304 -8 3974 183 38 53 chr1 259439231 259439379 -22754285 + L1MB7 LINE L1 4647 4796 -1388 2405 63 7 3 chr1 259439379 259439678 -22753986 + AluY SINE Alu 1 300 -11 3974 183 38 53 chr1 259439678 259439910 -22753754 + L1MB7 LINE L1 4796 5030 -1154 3441 68 0 26 chr1 259439910 259440366 -22753298 + MLT2A1 LTR ERVL 1 444 0 3974 183 38 53 chr1 259440366 259440393 -22753271 + L1MB7 LINE L1 5030 5056 -1128 4253 134 54 14 chr1 259440393 259441152 -22752512 - L1MA4 LINE L1 -4 6296 5508 3974 183 38 53 chr1 259441152 259441411 -22752253 + L1MB7 LINE L1 5056 5317 -867 2589 65 0 0 chr1 259441411 259441720 -22751944 + AluY SINE Alu 1 309 -2 3974 183 38 53 chr1 259441720 259442486 -22751178 + L1MB7 LINE L1 5317 6063 -121 2448 91 3 0 chr1 259442486 259442793 -22750871 + AluY SINE Alu 1 308 -3 3974 183 38 53 chr1 259442793 259442907 -22750757 + L1MB7 LINE L1 6063 6177 -7 330 45 0 0 chr1 259443094 259443138 -22750526 + (TG)n Simple_repeat Simple_repeat 2 45 0 560 280 174 0 chr1 259443153 259443360 -22750304 - MIR SINE MIR 0 262 20 465 325 98 33 chr1 259443361 259443727 -22749937 - L2 LINE L2 -854 2460 2071 3232 159 60 2 chr1 259446248 259446814 -22746850 + LTR26 LTR ERV1 5 603 0 225 309 74 43 chr1 259447233 259447463 -22746201 - L2 LINE L2 -222 3050 2814 708 208 191 0 chr1 259447518 259447696 -22745968 + MER58A DNA MER1_type 13 224 0 194 222 93 46 chr1 259447749 259447857 -22745807 - L2 LINE L2 -618 2696 2584 2335 111 0 0 chr1 259447920 259448217 -22745447 + AluSq SINE Alu 1 297 -16 240 308 0 0 chr1 259448219 259448284 -22745380 + MER117 DNA MER1_type 42 106 -91 4335 71 11 25 chr1 259449786 259449905 -22743759 - MER41A LTR ERV1 -1 553 434 2488 74 6 3 chr1 259449905 259450217 -22743447 + AluSq SINE Alu 1 313 0 4335 71 11 25 chr1 259450217 259450658 -22743006 - MER41A LTR ERV1 -120 434 1 314 284 0 39 chr1 259452192 259452294 -22741370 + MIR3 SINE MIR 90 187 -21 401 248 193 6 chr1 259452473 259452634 -22741030 + L2 LINE L2 2877 3067 -246 745 176 21 0 chr1 259452634 259452776 -22740888 - MER53 DNA DNA -44 145 1 1775 213 10 20 chr1 259453265 259453446 -22740218 + MLT1B LTR MaLR 1 182 -208 2366 107 3 0 chr1 259453446 259453754 -22739910 + AluSx SINE Alu 1 309 -3 1775 213 10 20 chr1 259453754 259453966 -22739698 + MLT1B LTR MaLR 182 390 0 189 222 0 0 chr1 259454449 259454485 -22739179 + L2 LINE L2 3221 3256 -16 201 261 0 0 chr1 259455970 259456016 -22737648 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 708 113 94 0 chr1 259456016 259456153 -22737511 - AluJb SINE Alu 0 312 166 3917 145 117 23 chr1 259456153 259457529 -22736135 + pTR5 LTR ERV1 743 2606 0 1435 174 118 11 chr1 259457565 259457835 -22735829 - AluJo SINE Alu -13 299 1 348 298 92 0 chr1 259458327 259458468 -22735196 - L3 LINE CR1 -375 1202 1049 255 303 118 0 chr1 259458552 259458671 -22734993 + MIR SINE MIR 27 159 -103 2109 98 20 17 chr1 259459361 259459658 -22734006 + AluSq SINE Alu 1 298 -15 1064 229 122 17 chr1 259459853 259460264 -22733400 + MLT2B1 LTR ERVL 3 456 -64 718 193 21 7 chr1 259460298 259460438 -22733226 + MLT1A1 LTR MaLR 8 149 -216 1851 162 16 7 chr1 259460515 259460824 -22732840 + AluSx SINE Alu 1 312 0 186 233 278 11 chr1 259460966 259461056 -22732608 + L2 LINE L2 2947 3060 -212 301 260 111 12 chr1 259461067 259461261 -22732403 - MLT1L LTR MaLR 0 615 288 * 338 229 42 90 chr1 259461235 259461401 -22732263 - MLT1L LTR MaLR -221 394 237 238 329 65 41 chr1 259461582 259461828 -22731836 - L2 LINE L2 -499 2815 2564 273 339 53 21 chr1 259461893 259462082 -22731582 - L2 LINE L2 -907 2407 2213 2269 88 10 0 chr1 259462174 259462470 -22731194 + AluSx SINE Alu 1 299 -13 1084 244 59 49 chr1 259462755 259463067 -22730597 - L1M4 LINE L1 -847 5299 4979 2217 120 0 3 chr1 259463067 259463366 -22730298 + AluSx SINE Alu 1 298 -14 1084 244 59 49 chr1 259463366 259463524 -22730140 - L1M4 LINE L1 -1167 4979 4824 269 238 0 0 chr1 259463516 259463579 -22730085 - L1M4 LINE L1 -2233 3913 3851 * 2511 47 3 3 chr1 259463818 259464116 -22729548 + AluY SINE Alu 1 298 -13 290 289 226 33 chr1 259464398 259464730 -22728934 + L3 LINE CR1 1137 1532 -45 316 210 340 0 chr1 259464868 259464968 -22728696 - MIR SINE MIR -21 241 108 1423 65 150 5 chr1 259465514 259465714 -22727950 - AluYa8 SINE Alu -13 297 69 268 269 13 26 chr1 259466420 259466498 -22727166 + MER5B DNA MER1_type 102 178 0 2218 120 7 3 chr1 259467618 259467927 -22725737 + AluSx SINE Alu 1 310 -2 29 0 0 0 chr1 259468064 259468093 -22725571 + AT_rich Low_complexity Low_complexity 1 29 0 223 246 8 77 chr1 259470441 259470571 -22723093 + CT-rich Low_complexity Low_complexity 1 121 0 216 200 22 0 chr1 259470992 259471037 -22722627 + L2 LINE L2 3261 3306 -7 2402 94 0 3 chr1 259471037 259471335 -22722329 + AluSx SINE Alu 1 297 -15 1554 217 13 0 chr1 259471605 259471904 -22721760 + AluJo SINE Alu 3 305 -7 206 163 41 0 chr1 259471906 259471955 -22721709 + GA-rich Low_complexity Low_complexity 4 54 0 1587 119 14 0 chr1 259472067 259472277 -22721387 - AluSq SINE Alu -100 213 1 1409 256 78 19 chr1 259472277 259472789 -22720875 - L1MC4 LINE L1 -132 7910 7369 1932 153 0 29 chr1 259474934 259475248 -22718416 - AluJb SINE Alu -1 311 7 180 0 0 0 chr1 259475263 259475283 -22718381 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr1 259477838 259477861 -22715803 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr1 259478054 259478087 -22715577 + AT_rich Low_complexity Low_complexity 1 33 0 755 264 55 18 chr1 259478286 259478615 -22715049 - L1MC4 LINE L1 0 8042 7702 24 53 0 0 chr1 259478620 259478658 -22715006 + AT_rich Low_complexity Low_complexity 1 38 0 1930 139 0 0 chr1 259479496 259479754 -22713910 + AluSx SINE Alu 1 258 -54 1870 172 0 7 chr1 259481685 259481988 -22711676 + AluJo SINE Alu 11 311 -1 189 0 0 0 chr1 259482305 259482326 -22711338 + (T)n Simple_repeat Simple_repeat 1 21 0 1668 159 67 0 chr1 259482409 259482679 -22710985 + AluJb SINE Alu 1 288 -24 3448 70 15 2 chr1 259483463 259483477 -22710187 - MER41A LTR ERV1 -93 461 449 2138 108 26 7 chr1 259483477 259483784 -22709880 + AluSq SINE Alu 1 313 0 3448 70 15 2 chr1 259483784 259484224 -22709440 - MER41A LTR ERV1 -105 449 1 314 284 0 39 chr1 259485758 259485860 -22707804 + MIR3 SINE MIR 90 187 -21 401 248 193 6 chr1 259486039 259486200 -22707464 + L2 LINE L2 2877 3067 -246 764 176 21 0 chr1 259486200 259486342 -22707322 - MER53 DNA DNA -44 145 1 1724 203 13 23 chr1 259486831 259487012 -22706652 + MLT1B LTR MaLR 1 182 -208 2341 101 7 3 chr1 259487012 259487320 -22706344 + AluSx SINE Alu 1 309 -3 1724 203 13 23 chr1 259487320 259487532 -22706132 + MLT1B LTR MaLR 182 390 0 24 0 0 0 chr1 259489537 259489561 -22704103 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr1 259489561 259489582 -22704082 + (CA)n Simple_repeat Simple_repeat 2 22 0 679 113 94 0 chr1 259489584 259489721 -22703943 - AluJb SINE Alu 0 312 166 3788 147 117 23 chr1 259489721 259491097 -22702567 + pTR5 LTR ERV1 743 2606 0 232 167 0 0 chr1 259491097 259491133 -22702531 - AluJb SINE Alu -133 169 134 1401 174 118 11 chr1 259491133 259491403 -22702261 - AluJo SINE Alu -13 299 1 285 312 92 0 chr1 259491895 259492036 -22701628 - L3 LINE CR1 -375 1202 1049 193 311 118 0 chr1 259492120 259492239 -22701425 + MIR SINE MIR 27 159 -103 2086 95 20 17 chr1 259492928 259493222 -22700442 + AluSq SINE Alu 1 295 -18 862 248 126 24 chr1 259493420 259493832 -22699832 + MLT2B1 LTR ERVL 3 456 -64 770 186 21 7 chr1 259493866 259494006 -22699658 + MLT1A1 LTR MaLR 8 149 -216 231 200 0 0 chr1 259494017 259494062 -22699602 + MLT2D LTR ERVL 370 414 0 1810 162 16 7 chr1 259494083 259494392 -22699272 + AluSx SINE Alu 1 312 0 323 260 111 12 chr1 259494635 259494829 -22698835 - MLT1L LTR MaLR 0 615 288 * 366 229 42 90 chr1 259494803 259494969 -22698695 - MLT1L LTR MaLR -221 394 237 187 323 58 26 chr1 259495461 259495650 -22698014 - L2 LINE L2 -907 2407 2213 2155 105 10 0 chr1 259495742 259496036 -22697628 + AluSx SINE Alu 1 297 -15 1815 168 0 0 chr1 259496535 259496821 -22696843 + AluJb SINE Alu 1 286 -26 2083 137 13 0 chr1 259496833 259497132 -22696532 + AluSx SINE Alu 1 303 -9 2288 94 3 10 chr1 259497134 259497432 -22696232 + AluSp SINE Alu 1 296 -17 2527 214 12 6 chr1 259497936 259498451 -22695213 + LTR53 LTR ERVL 1 518 -1 585 155 144 0 chr1 259500328 259500425 -22693239 + FLAM_C SINE Alu 9 119 -24 1943 92 0 0 chr1 259500449 259500689 -22692975 - AluSx SINE Alu -19 293 54 860 115 0 0 chr1 259500689 259500802 -22692862 - AluSq/x SINE Alu -199 113 1 1207 237 241 0 chr1 259501463 259501928 -22691736 + L1ME3A LINE L1 5584 6160 -10 781 113 48 16 chr1 259501938 259502062 -22691602 + FLAM_C SINE Alu 1 128 -5 180 258 145 0 chr1 259502735 259502797 -22690867 - MIR3 SINE MIR -9 199 129 887 132 31 0 chr1 259503437 259503566 -22690098 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr1 259505246 259505267 -22688397 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 302 0 26 0 chr1 259505365 259505403 -22688261 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 586 177 18 0 chr1 259505409 259505522 -22688142 - FLAM_A SINE Alu -18 115 1 2235 91 7 0 chr1 259506877 259507181 -22686483 + AluSx SINE Alu 5 310 0 1846 94 8 4 chr1 259507538 259507783 -22685881 + AluSx SINE Alu 42 287 -25 2252 108 0 7 chr1 259508353 259508649 -22685015 - AluSx SINE Alu -18 294 1 219 114 0 0 chr1 259508684 259508719 -22684945 + (A)n Simple_repeat Simple_repeat 1 35 0 1530 141 12 20 chr1 259509290 259509545 -22684119 - AluJb SINE Alu -11 301 49 198 0 0 0 chr1 259511275 259511297 -22682367 + (A)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr1 259512671 259512692 -22680972 + (T)n Simple_repeat Simple_repeat 1 21 0 920 199 34 15 chr1 259516174 259516380 -22677284 + MER33 DNA MER1_type 5 214 -110 475 87 0 0 chr1 259516434 259516503 -22677161 + Alu SINE Alu 236 304 -8 312 188 14 29 chr1 259516503 259516572 -22677092 + MER33 DNA MER1_type 257 324 0 2272 129 0 0 chr1 259516603 259516913 -22676751 + AluSx SINE Alu 1 310 -2 281 294 153 25 chr1 259517699 259517862 -22675802 - L1ME LINE L1 -442 5679 5496 25 0 0 0 chr1 259518950 259518975 -22674689 + AT_rich Low_complexity Low_complexity 1 25 0 2032 123 7 3 chr1 259519439 259519723 -22673941 - AluSg SINE Alu -25 285 1 1644 159 67 0 chr1 259520521 259520791 -22672873 - AluJb SINE Alu -24 288 1 180 0 0 0 chr1 259520874 259520894 -22672770 + (A)n Simple_repeat Simple_repeat 1 20 0 1805 175 0 7 chr1 259521211 259521514 -22672150 - AluJo SINE Alu -1 311 11 1912 139 0 0 chr1 259523445 259523703 -22669961 - AluSx SINE Alu -54 258 1 24 53 0 0 chr1 259524541 259524579 -22669085 + AT_rich Low_complexity Low_complexity 1 38 0 829 258 55 18 chr1 259524584 259524913 -22668751 + L1MC4 LINE L1 7702 8042 0 26 30 0 0 chr1 259525112 259525145 -22668519 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr1 259525338 259525361 -22668303 + AT_rich Low_complexity Low_complexity 1 23 0 235 286 0 0 chr1 259527478 259527527 -22666137 + Charlie4 DNA MER1_type 2 50 -1911 189 0 0 0 chr1 259527915 259527936 -22665728 + (A)n Simple_repeat Simple_repeat 1 21 0 1846 147 0 41 chr1 259527951 259528265 -22665399 + AluJb SINE Alu 7 307 -5 1563 249 74 21 chr1 259530410 259530925 -22662739 + L1MC4 LINE L1 7369 7910 -132 1553 120 14 0 chr1 259530925 259531134 -22662530 + AluSq SINE Alu 1 212 -101 444 280 121 19 chr1 259531375 259531632 -22662032 - L1ME LINE L1 -299 5822 5540 2002 124 57 0 chr1 259531651 259531933 -22661731 + AluSg SINE Alu 2 299 -11 262 284 23 0 chr1 259531951 259532039 -22661625 + MIR SINE MIR 156 245 -17 2473 90 0 0 chr1 259532057 259532368 -22661296 - AluY SINE Alu 0 311 1 447 194 279 15 chr1 259533292 259533493 -22660171 - HAL1 LINE L1 -192 2315 2062 24 0 0 0 chr1 259535225 259535249 -22658415 + AT_rich Low_complexity Low_complexity 1 24 0 1210 257 145 53 chr1 259535266 259536016 -22657648 - HAL1 LINE L1 -29 2478 1660 243 218 436 0 chr1 259536253 259536354 -22657310 + MER58B DNA MER1_type 197 341 0 1143 226 155 81 chr1 259536370 259536601 -22657063 - HAL1 LINE L1 -1193 1314 1102 2089 126 17 0 chr1 259536601 259536895 -22656769 - AluSg SINE Alu -11 299 1 1143 226 155 81 chr1 259536895 259537405 -22656259 - HAL1 LINE L1 -1405 1102 518 21 36 0 0 chr1 259537588 259537616 -22656048 + AT_rich Low_complexity Low_complexity 1 28 0 269 229 84 46 chr1 259538001 259538132 -22655532 + L2 LINE L2 2923 3058 -214 1434 232 133 72 chr1 259539011 259539875 -22653789 + L2 LINE L2 2296 3192 -121 27 0 0 0 chr1 259542253 259542280 -22651384 + AT_rich Low_complexity Low_complexity 1 27 0 186 133 0 0 chr1 259544660 259544690 -22648974 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 257 229 115 33 chr1 259549608 259549730 -22643934 + Charlie7 DNA MER1_type 2434 2565 -47 417 342 112 21 chr1 259549746 259550085 -22643579 + L2 LINE L2 2606 2975 -339 23 0 0 0 chr1 259550953 259550976 -22642688 + AT_rich Low_complexity Low_complexity 1 23 0 1499 149 11 81 chr1 259551172 259551416 -22642248 + L1MB8 LINE L1 5831 6042 -136 2370 74 0 3 chr1 259551416 259551714 -22641950 + AluY SINE Alu 1 297 -14 1499 149 11 81 chr1 259551714 259551838 -22641826 + L1MB8 LINE L1 6042 6173 -5 1535 218 3 7 chr1 259552142 259552445 -22641219 - AluJo SINE Alu -10 302 1 1856 155 17 10 chr1 259553002 259553298 -22640366 + AluJo SINE Alu 1 298 -14 1104 216 58 45 chr1 259555602 259555981 -22637683 - Charlie1 DNA MER1_type 0 2761 2378 231 206 0 79 chr1 259555979 259556042 -22637622 - Charlie1 DNA MER1_type -2703 58 1 * 1642 141 59 43 chr1 259556174 259556478 -22637186 - AluJo SINE Alu -3 309 1 231 176 118 71 chr1 259556805 259556890 -22636774 + MER105 DNA DNA 114 202 -2 2410 89 0 0 chr1 259557331 259557633 -22636031 - AluSg SINE Alu -8 302 1 191 344 98 0 chr1 259558621 259558682 -22634982 - MIR3 SINE MIR -133 75 9 2223 113 0 3 chr1 259559111 259559413 -22634251 - AluSq SINE Alu -12 301 1 370 275 104 47 chr1 259559743 259559978 -22633686 + MIR SINE MIR 13 262 0 254 371 131 18 chr1 259560094 259560431 -22633233 + L2 LINE L2 2563 2937 -377 23 0 0 0 chr1 259561669 259561692 -22631972 + AT_rich Low_complexity Low_complexity 1 23 0 2576 46 0 7 chr1 259562395 259562701 -22630963 - AluY SINE Alu -7 304 1 2214 117 0 0 chr1 259563215 259563515 -22630149 + AluSx SINE Alu 1 300 -12 2361 78 0 28 chr1 259565562 259565882 -22627782 + AluY SINE Alu 1 311 0 315 273 157 8 chr1 259565966 259566087 -22627577 - L1ME3A LINE L1 -83 6087 5949 1908 269 91 18 chr1 259566197 259567480 -22626184 - L1ME3A LINE L1 -221 5949 4561 1586 273 147 57 chr1 259567605 259567805 -22625859 - L1ME3A LINE L1 -1911 4235 4054 2153 110 3 0 chr1 259567805 259568115 -22625549 + AluSx SINE Alu 3 313 0 1586 273 147 57 chr1 259568115 259568891 -22624773 - L1ME3A LINE L1 -2092 4054 3349 2641 49 0 0 chr1 259568891 259569196 -22624468 - AluY SINE Alu -6 305 1 1586 273 147 57 chr1 259569196 259569793 -22623871 - L1ME3A LINE L1 -2797 3349 2519 270 98 0 0 chr1 259569848 259569889 -22623775 - MADE1 DNA Mariner -39 41 1 2332 153 70 9 chr1 259569898 259570437 -22623227 + L1M3f LINE L1 46 661 -4667 2014 99 44 0 chr1 259570486 259570759 -22622905 + AluSx SINE Alu 11 295 -17 765 194 0 0 chr1 259570787 259570916 -22622748 - FAM SINE Alu -53 132 4 2052 113 10 0 chr1 259571217 259571508 -22622156 + AluSc SINE Alu 1 294 -15 21 57 0 0 chr1 259571568 259571603 -22622061 + AT_rich Low_complexity Low_complexity 1 35 0 2115 115 0 0 chr1 259571605 259571924 -22621740 + AluSc SINE Alu 1 319 0 1306 119 0 0 chr1 259572294 259572471 -22621193 - AluSg SINE Alu -120 190 14 1301 128 0 25 chr1 259572485 259572689 -22620975 - AluSp SINE Alu -114 199 1 986 145 14 58 chr1 259572697 259572904 -22620760 - Tigger2 DNA MER2_type -199 2519 2322 23 33 0 0 chr1 259573192 259573222 -22620442 + AT_rich Low_complexity Low_complexity 1 30 0 1053 165 0 0 chr1 259573360 259573518 -22620146 + FRAM SINE Alu 1 158 -18 665 323 68 43 chr1 259573609 259574327 -22619337 - L1M4 LINE L1 -1778 4368 3633 240 244 237 27 chr1 259574528 259574647 -22619017 - L1M4 LINE L1 -2772 3374 3281 1602 162 13 70 chr1 259574647 259574824 -22618840 - AluJb SINE Alu -10 302 149 2088 109 3 20 chr1 259574824 259575128 -22618536 - AluSp SINE Alu -14 299 1 1602 162 13 70 chr1 259575128 259575265 -22618399 - AluJb SINE Alu -163 149 6 240 244 237 27 chr1 259575265 259575583 -22618081 - L1M4 LINE L1 -2865 3281 2845 2232 112 3 0 chr1 259575687 259575991 -22617673 + AluSp SINE Alu 1 305 -8 215 230 14 27 chr1 259576389 259576463 -22617201 + GA-rich Low_complexity Low_complexity 5 77 0 337 303 146 12 chr1 259576663 259576780 -22616884 - L1MEd LINE L1 -5650 469 322 225 83 0 0 chr1 259576780 259576816 -22616848 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 337 303 146 12 chr1 259576816 259576863 -22616801 - L1MEd LINE L1 -5797 322 283 227 250 25 12 chr1 259576969 259577049 -22616615 - L1MEd LINE L1 -5974 145 65 21 0 0 0 chr1 259577951 259577972 -22615692 + AT_rich Low_complexity Low_complexity 1 21 0 261 329 82 12 chr1 259578044 259578129 -22615535 - L2 LINE L2 -46 3226 3136 506 79 53 0 chr1 259578261 259578337 -22615327 + MADE1 DNA Mariner 1 80 0 278 300 60 10 chr1 259578554 259578654 -22615010 + MIR3 SINE MIR 90 194 -14 770 150 0 8 chr1 259578782 259578902 -22614762 + FLAM_C SINE Alu 2 120 -23 1233 42 18 18 chr1 259579850 259580017 -22613647 + L1PA6 LINE L1 5987 6153 -1 1543 98 0 0 chr1 259580461 259580654 -22613010 + AluSq SINE Alu 5 197 -116 378 127 16 0 chr1 259580658 259580721 -22612943 + AluSq SINE Alu 234 297 -3 384 107 71 0 chr1 259580873 259580929 -22612735 + Tigger2 DNA MER2_type 3 62 -2656 1702 155 50 70 chr1 259580979 259581209 -22612455 + Tigger2 DNA MER2_type 2307 2540 -178 2191 91 0 17 chr1 259581209 259581505 -22612159 + AluSp SINE Alu 1 291 -22 1702 155 50 70 chr1 259581505 259581630 -22612034 + Tigger2 DNA MER2_type 2540 2656 -62 2124 132 20 0 chr1 259581630 259581934 -22611730 + AluSx SINE Alu 1 310 -2 1702 155 50 70 chr1 259581934 259581976 -22611688 + Tigger2 DNA MER2_type 2656 2697 -21 2151 230 50 60 chr1 259582061 259582717 -22610947 + MER21B LTR ERV1 88 737 -126 295 270 218 45 chr1 259583994 259584283 -22609381 - L2 LINE L2 -517 2797 2459 2166 123 0 3 chr1 259584852 259585160 -22608504 + AluSx SINE Alu 1 307 -5 381 357 66 37 chr1 259585308 259585686 -22607978 + L2 LINE L2 2443 2831 -483 261 275 0 88 chr1 259585705 259585785 -22607879 - L2 LINE L2 -15 3298 3226 1291 153 4 47 chr1 259586287 259586523 -22607141 + AluJo SINE Alu 86 311 -1 644 175 42 42 chr1 259586925 259587068 -22606596 + MLT1B LTR MaLR 190 332 -58 1578 166 66 4 chr1 259587068 259587339 -22606325 + AluJo SINE Alu 1 288 -24 21 36 0 0 chr1 259587374 259587402 -22606262 + AT_rich Low_complexity Low_complexity 1 28 0 1670 180 0 38 chr1 259588398 259588715 -22604949 + AluJo SINE Alu 1 305 -7 946 255 25 0 chr1 259589185 259589424 -22604240 - MIR SINE MIR -11 251 7 183 195 0 24 chr1 259590028 259590069 -22603595 - L3 LINE CR1 -904 673 634 988 198 62 62 chr1 259590489 259590797 -22602867 + MLT1E LTR MaLR 253 586 -7 1999 106 72 10 chr1 259590854 259591147 -22602517 + AluSx SINE Alu 1 311 -1 1368 124 37 58 chr1 259591918 259592159 -22601505 - AluJo SINE Alu -21 291 56 1419 228 74 49 chr1 259592161 259592197 -22601467 + L1ME2 LINE L1 533 567 -5963 2204 148 84 2 chr1 259592197 259592590 -22601074 + MSTA LTR MaLR 4 428 0 1419 228 74 49 chr1 259592590 259593001 -22600663 + L1ME2 LINE L1 567 991 -5539 1042 231 89 91 chr1 259593149 259593369 -22600295 + L1ME2 LINE L1 1734 1953 -4587 2177 120 10 0 chr1 259593369 259593678 -22599986 + AluSx SINE Alu 1 312 0 1042 231 89 91 chr1 259593678 259593742 -22599922 + L1ME2 LINE L1 1953 2016 -4524 2130 116 19 10 chr1 259593742 259594052 -22599612 + AluSq SINE Alu 1 313 0 1042 231 89 91 chr1 259594052 259594083 -22599581 + L1ME2 LINE L1 2016 2046 -4494 2102 136 0 0 chr1 259594083 259594377 -22599287 + AluSx SINE Alu 1 294 -18 1042 231 89 91 chr1 259594377 259595171 -22598493 + L1ME2 LINE L1 2046 2896 -3644 1886 166 0 3 chr1 259595171 259595455 -22598209 + AluSx SINE Alu 27 309 -3 1042 231 89 91 chr1 259595455 259595713 -22597951 + L1ME2 LINE L1 2896 3153 -3387 1935 167 0 3 chr1 259595715 259596026 -22597638 + AluSx SINE Alu 3 312 0 313 257 62 0 chr1 259596029 259596142 -22597522 + L1ME2 LINE L1 3365 3484 -3056 1422 150 36 120 chr1 259596143 259596477 -22597187 + AluJb SINE Alu 5 310 -2 300 338 0 0 chr1 259596477 259596554 -22597110 + polypurine Low_complexity Low_complexity 4 80 0 980 264 88 0 chr1 259596566 259596952 -22596712 + L1ME2 LINE L1 3893 4312 -2228 1280 120 11 0 chr1 259596952 259597135 -22596529 + AluSx SINE Alu 1 185 -127 3191 207 85 15 chr1 259597179 259598254 -22595410 + L1ME2 LINE L1 4305 5454 -1086 804 232 131 33 chr1 259598504 259598736 -22594928 + L1ME2 LINE L1 5699 5907 -651 2231 102 16 0 chr1 259598736 259599040 -22594624 + AluSc SINE Alu 1 309 0 804 232 131 33 chr1 259599040 259599504 -22594160 + L1ME2 LINE L1 5907 6535 -23 1021 155 78 5 chr1 259599642 259599835 -22593829 + MER2 DNA MER2_type 2 208 -137 306 276 39 31 chr1 259599931 259600058 -22593606 + L1MC4 LINE L1 7914 8041 -1 441 0 0 0 chr1 259600290 259600339 -22593325 + (CA)n Simple_repeat Simple_repeat 2 50 0 1514 130 159 4 chr1 259600409 259600679 -22592985 + AluSx SINE Alu 1 312 0 343 295 189 38 chr1 259600681 259601051 -22592613 + L2 LINE L2 2235 2660 -654 2332 88 3 0 chr1 259601392 259601689 -22591975 + AluSq SINE Alu 1 298 -15 2366 85 0 3 chr1 259601690 259601996 -22591668 + AluSc SINE Alu 1 305 -4 735 300 49 16 chr1 259602078 259602325 -22591339 + MIR SINE MIR 8 262 0 183 42 0 0 chr1 259603606 259603630 -22590034 + (G)n Simple_repeat Simple_repeat 1 24 0 2389 79 0 0 chr1 259605260 259605552 -22588112 + AluSg SINE Alu 3 294 -16 328 201 138 94 chr1 259607486 259607583 -22586081 + L1MC4 LINE L1 7513 7621 -421 1802 164 17 3 chr1 259607583 259607881 -22585783 + AluJo SINE Alu 1 302 -10 328 201 138 94 chr1 259607881 259607942 -22585722 + L1MC4 LINE L1 7621 7678 -364 182 312 46 46 chr1 259608201 259608310 -22585354 - MIR SINE MIR -77 185 77 281 220 28 46 chr1 259608502 259608611 -22585053 + GA-rich Low_complexity Low_complexity 3 109 0 1137 224 131 59 chr1 259608973 259609676 -22583988 + L1MC4 LINE L1 7113 7871 -171 2190 148 40 54 chr1 259609676 259609726 -22583938 + MSTB LTR MaLR 5 54 -372 2201 84 40 10 chr1 259609726 259610024 -22583640 + AluSx SINE Alu 1 307 -5 2190 148 40 54 chr1 259610024 259610400 -22583264 + MSTB LTR MaLR 54 425 -1 1137 224 131 59 chr1 259610400 259610424 -22583240 + L1MC4 LINE L1 7871 7892 -150 774 164 14 7 chr1 259610455 259610595 -22583069 + AluJb SINE Alu 169 309 -3 266 180 0 0 chr1 259610597 259610647 -22583017 + L1M4 LINE L1 2974 3023 -3123 507 66 53 0 chr1 259610649 259610725 -22582939 + MADE1 DNA Mariner 1 80 0 1320 204 39 8 chr1 259610778 259611033 -22582631 + AluJo SINE Alu 1 263 -49 338 264 141 12 chr1 259611262 259611425 -22582239 + L1ME3A LINE L1 2445 2628 -3518 2294 72 7 20 chr1 259611441 259611745 -22581919 + AluY SINE Alu 1 300 -11 375 242 216 2 chr1 259611907 259612320 -22581344 + L1ME3A LINE L1 2777 3277 -2869 577 285 120 45 chr1 259612682 259613292 -22580372 + L1ME3A LINE L1 3864 4824 -1322 24 32 0 0 chr1 259613611 259613642 -22580022 + AT_rich Low_complexity Low_complexity 1 31 0 2167 109 0 29 chr1 259614704 259615016 -22578648 + AluSx SINE Alu 1 303 -9 331 296 173 0 chr1 259615017 259615196 -22578468 + L1ME3A LINE L1 5341 5550 -2258 196 358 80 44 chr1 259615610 259615747 -22577917 - MIR3 SINE MIR -61 147 6 1941 127 78 27 chr1 259615814 259616185 -22577479 + MLT1B LTR MaLR 1 390 0 2264 98 10 3 chr1 259616382 259616678 -22576986 + AluSq SINE Alu 1 298 -15 1905 168 20 3 chr1 259616768 259617072 -22576592 + AluSx SINE Alu 1 309 -3 23 0 0 0 chr1 259617265 259617288 -22576376 + AT_rich Low_complexity Low_complexity 1 23 0 1509 86 54 14 chr1 259617336 259617557 -22576107 + MER30 DNA MER1_type 1 230 0 319 206 0 0 chr1 259617570 259617638 -22576026 + HAL1 LINE L1 145 212 -2295 1607 226 154 77 chr1 259617882 259618736 -22574928 + HAL1 LINE L1 539 1494 -1013 2319 104 0 0 chr1 259618736 259619043 -22574621 + AluSx SINE Alu 1 307 -5 1607 226 154 77 chr1 259619043 259619264 -22574400 + HAL1 LINE L1 1494 1697 -810 1089 243 127 31 chr1 259619275 259619859 -22573805 + HAL1 LINE L1 1777 2434 -73 2222 104 13 3 chr1 259619859 259620166 -22573498 - AluSx SINE Alu -2 310 1 1089 243 127 31 chr1 259620166 259620248 -22573416 + HAL1 LINE L1 2434 2507 0 606 260 183 7 chr1 259621006 259621306 -22572358 + L1ME3A LINE L1 5665 6017 -153 1231 165 38 73 chr1 259621405 259621504 -22572160 + AluJo SINE Alu 22 123 -189 2049 121 0 4 chr1 259621504 259621820 -22571844 - AluSx SINE Alu 0 317 3 1231 165 38 73 chr1 259621820 259621980 -22571684 + AluJo SINE Alu 123 273 -39 3766 171 12 36 chr1 259621980 259622810 -22570854 + L1MB5 LINE L1 5355 6164 -10 248 284 142 45 chr1 259622830 259623211 -22570453 + L1ME LINE L1 5479 5896 -225 723 279 162 29 chr1 259623291 259623668 -22569996 + L2 LINE L2 2887 3313 0 2748 198 73 57 chr1 259623995 259624264 -22569400 - MER21B LTR ERV1 -113 750 487 2411 88 0 0 chr1 259624264 259624561 -22569103 - AluSx SINE Alu -15 297 1 2748 198 73 57 chr1 259624561 259625029 -22568635 - MER21B LTR ERV1 -376 487 1 218 0 0 86 chr1 259625176 259625211 -22568453 + (TCTCCC)n Simple_repeat Simple_repeat 5 36 0 10214 57 47 10 chr1 259625216 259626549 -22567115 + SVA Other Other 2 1384 -2 21 36 0 0 chr1 259626762 259626790 -22566874 + AT_rich Low_complexity Low_complexity 1 28 0 2139 108 3 7 chr1 259627022 259627318 -22566346 + AluSx SINE Alu 3 297 -15 360 206 30 53 chr1 259629267 259629398 -22564266 + MER112 DNA MER1_type 38 165 -95 2186 120 0 3 chr1 259629464 259629764 -22563900 + AluSx SINE Alu 2 300 -12 298 286 0 0 chr1 259630131 259630208 -22563456 + MER116 DNA Mariner 4 80 0 1957 108 17 17 chr1 259630448 259630736 -22562928 + AluSq SINE Alu 1 288 -25 2230 104 7 0 chr1 259630925 259631223 -22562441 + AluSx SINE Alu 1 300 -12 735 300 49 16 chr1 259633550 259633797 -22559867 - MIR SINE MIR 0 262 8 2310 92 0 3 chr1 259633879 259634185 -22559479 - AluSc SINE Alu -4 305 1 2302 81 0 3 chr1 259634186 259634482 -22559182 - AluSg SINE Alu -15 295 1 248 216 155 35 chr1 259635830 259635946 -22557718 + MIR SINE MIR 69 198 -64 2286 70 40 3 chr1 259636156 259636456 -22557208 + AluSq SINE Alu 1 311 -2 2029 90 10 24 chr1 259637053 259637341 -22556323 + AluSc SINE Alu 1 284 -25 2230 104 7 0 chr1 259637530 259637828 -22555836 + AluSx SINE Alu 1 300 -12 2721 3 0 0 chr1 259638104 259638399 -22555265 - AluYa5 SINE Alu -16 295 1 229 154 154 0 chr1 259639062 259639114 -22554550 + L1MA10 LINE L1 6267 6326 -8 786 154 8 0 chr1 259639114 259639231 -22554433 + FLAM_C SINE Alu 1 118 -15 982 167 39 8 chr1 259639286 259639594 -22554070 - MLT1A1 LTR MaLR 0 365 1 1629 125 116 60 chr1 259640266 259640382 -22553282 - L1PA16 LINE L1 -7 6159 6051 2436 70 0 22 chr1 259640382 259640696 -22552968 - AluY SINE Alu -4 307 1 1629 125 116 60 chr1 259640696 259640914 -22552750 - L1PA16 LINE L1 -115 6051 5806 909 171 0 0 chr1 259640963 259641092 -22552572 + FLAM_C SINE Alu 1 129 -4 21 0 0 0 chr1 259641128 259641149 -22552515 + AT_rich Low_complexity Low_complexity 1 21 0 1975 140 0 0 chr1 259641149 259641427 -22552237 + AluSx SINE Alu 1 278 -34 255 79 0 0 chr1 259641431 259641469 -22552195 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 304 179 0 36 chr1 259641472 259641528 -22552136 + AluSp SINE Alu 120 173 -130 225 344 112 8 chr1 259641848 259641973 -22551691 - Tigger8 DNA MER2_type -1 665 528 2067 116 27 3 chr1 259642331 259642623 -22551041 - AluSp SINE Alu -14 299 1 480 256 242 51 chr1 259643097 259643143 -22550521 - Tigger8 DNA MER2_type -235 431 395 1808 194 30 19 chr1 259643143 259643504 -22550160 + MLT1A1 LTR MaLR 1 365 0 480 256 242 51 chr1 259643504 259643730 -22549934 - Tigger8 DNA MER2_type -271 395 107 270 301 294 0 chr1 259644054 259644363 -22549301 - L2 LINE L2 -963 2351 1952 505 276 70 55 chr1 259645006 259645318 -22548346 + L1ME LINE L1 5503 5819 -302 2356 71 17 0 chr1 259645436 259645730 -22547934 + AluSp SINE Alu 1 299 -14 2091 128 0 0 chr1 259645805 259646101 -22547563 + AluSg SINE Alu 1 296 -14 2255 110 0 3 chr1 259646111 259646410 -22547254 + AluSx SINE Alu 1 298 -14 215 197 16 16 chr1 259646850 259646911 -22546753 + (TATAA)n Simple_repeat Simple_repeat 5 65 0 499 278 179 0 chr1 259647111 259647273 -22546391 + MIR SINE MIR 6 196 -66 386 140 269 13 chr1 259647298 259647423 -22546241 + L1MB3 LINE L1 6029 6176 -6 23 0 0 0 chr1 259647577 259647600 -22546064 + AT_rich Low_complexity Low_complexity 1 23 0 1912 130 27 20 chr1 259648101 259648401 -22545263 + AluSx SINE Alu 1 302 -10 198 0 0 0 chr1 259648603 259648625 -22545039 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr1 259648696 259648724 -22544940 + AT_rich Low_complexity Low_complexity 1 28 0 2150 121 3 0 chr1 259649024 259649322 -22544342 + AluSx SINE Alu 1 299 -13 2257 84 0 48 chr1 259649847 259650157 -22543507 - AluY SINE Alu -16 295 1 428 295 91 29 chr1 259650315 259650556 -22543108 + MIR SINE MIR 5 260 -2 914 226 32 45 chr1 259651165 259651386 -22542278 + MER20 DNA MER1_type 2 219 0 1832 206 69 108 chr1 259651440 259652030 -22541634 - L1 LINE L1 -1208 4938 4380 702 195 32 8 chr1 259652030 259652153 -22541511 - FLAM_C SINE Alu -7 126 1 1832 206 69 108 chr1 259652153 259652286 -22541378 - L1 LINE L1 -1766 4380 4243 1248 189 68 25 chr1 259652426 259652707 -22540957 + MLT1C LTR MaLR 36 328 -139 * 1323 169 68 17 chr1 259652686 259652923 -22540741 + MLT2C2 LTR ERVL 214 462 -2 801 177 8 8 chr1 259653373 259653503 -22540161 + AluJo SINE Alu 5 134 -178 2215 107 3 19 chr1 259653997 259654314 -22539350 - AluSx SINE Alu 0 312 1 912 182 13 0 chr1 259654587 259654741 -22538923 + AluJo SINE Alu 140 295 -17 267 267 173 0 chr1 259654896 259654971 -22538693 - MIR SINE MIR -109 153 66 1382 142 27 36 chr1 259655041 259655266 -22538398 - AluJb SINE Alu -89 223 1 202 348 11 11 chr1 259655457 259655549 -22538115 - L2 LINE L2 -530 2784 2693 689 179 54 42 chr1 259655988 259656156 -22537508 + L1ME3 LINE L1 5985 6154 -8 1409 192 153 10 chr1 259656162 259656501 -22537163 + MSTD LTR MaLR 1 391 -5 369 0 0 0 chr1 259656513 259656554 -22537110 + (CA)n Simple_repeat Simple_repeat 2 42 0 442 268 67 41 chr1 259656630 259656824 -22536840 + MLT1L LTR MaLR 413 611 -4 817 181 211 5 chr1 259657374 259657573 -22536091 + MIR SINE MIR 8 247 -15 726 48 0 0 chr1 259657703 259657787 -22535877 - AluY SINE Alu -10 301 218 1614 49 0 0 chr1 259657787 259657972 -22535692 - AluY SINE Alu -126 185 1 706 213 39 0 chr1 259658168 259658295 -22535369 + FLAM_C SINE Alu 2 133 0 1991 147 0 29 chr1 259658414 259658548 -22535116 + AluSx SINE Alu 1 137 -175 2279 115 0 0 chr1 259658548 259658860 -22534804 + AluSx SINE Alu 1 312 0 1991 147 0 29 chr1 259658860 259659039 -22534625 + AluSx SINE Alu 137 305 -7 276 254 44 44 chr1 259659064 259659178 -22534486 + MLT1E LTR MaLR 22 135 -458 839 148 0 0 chr1 259659348 259659463 -22534201 + FRAM SINE Alu 16 130 -46 424 250 65 63 chr1 259659558 259659880 -22533784 + L1ME4a LINE L1 5290 5616 -554 394 305 191 30 chr1 259659905 259660141 -22533523 - L2 LINE L2 -488 2826 2553 650 249 33 35 chr1 259660210 259660461 -22533203 + L1ME4a LINE L1 5593 5844 -340 1904 156 3 7 chr1 259660461 259660763 -22532901 + AluJo SINE Alu 1 301 -11 650 249 33 35 chr1 259660763 259660845 -22532819 + L1ME4a LINE L1 5844 5925 -259 2300 148 60 0 chr1 259662054 259662438 -22531226 - L1MB7 LINE L1 -231 5953 5547 200 265 88 0 chr1 259662631 259662699 -22530965 - MIR SINE MIR -183 79 6 1449 179 59 103 chr1 259663000 259663343 -22530321 + MLT1B LTR MaLR 1 325 -65 1745 93 115 14 chr1 259663343 259663622 -22530042 + AluY SINE Alu 1 307 -4 1449 179 59 103 chr1 259663622 259663685 -22529979 + MLT1B LTR MaLR 325 389 -1 2218 109 7 0 chr1 259663752 259664054 -22529610 + AluY SINE Alu 1 304 -7 306 141 62 31 chr1 259664307 259664371 -22529293 + AluJo SINE Alu 71 136 -166 235 216 155 35 chr1 259665912 259666028 -22527636 - MIR SINE MIR -64 198 69 2440 77 0 3 chr1 259667376 259667686 -22525978 + AluSg SINE Alu 1 309 -1 24 0 0 0 chr1 259669466 259669490 -22524174 + GC_rich Low_complexity Low_complexity 1 24 0 34 65 0 0 chr1 259669825 259669887 -22523777 + GC_rich Low_complexity Low_complexity 1 62 0 227 240 0 0 chr1 259670015 259670065 -22523599 + G-rich Low_complexity Low_complexity 1 50 0 30 0 0 0 chr1 259670076 259670106 -22523558 + GC_rich Low_complexity Low_complexity 1 30 0 1905 94 47 25 chr1 259671457 259671732 -22521932 + AluSx SINE Alu 1 281 -31 351 0 0 0 chr1 259671735 259671774 -22521890 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 469 188 99 0 chr1 259672926 259673027 -22520637 - MIR3 SINE MIR -5 203 93 866 155 7 7 chr1 259673171 259673313 -22520351 + AluJo SINE Alu 1 142 -170 2037 101 0 4 chr1 259673314 259673581 -22520083 + AluSg SINE Alu 1 266 -44 240 125 0 0 chr1 259673581 259673613 -22520051 + Alu SINE Alu 217 248 -51 1088 162 42 19 chr1 259673613 259673829 -22519835 + AluJo SINE Alu 85 305 -7 1888 131 14 0 chr1 259674073 259674363 -22519301 - AluSx SINE Alu -18 294 1 1848 166 13 7 chr1 259675320 259675627 -22518037 + AluJb SINE Alu 1 309 -3 2189 102 7 7 chr1 259675637 259676040 -22517624 + AluSp SINE Alu 3 405 0 2453 91 0 3 chr1 259676347 259676655 -22517009 + AluSc SINE Alu 1 307 -2 751 246 73 16 chr1 259677295 259677486 -22516178 - MIR SINE MIR -48 214 13 184 290 32 16 chr1 259677720 259677782 -22515882 + L2 LINE L2 3245 3307 -6 204 40 0 0 chr1 259678034 259678059 -22515605 + (TG)n Simple_repeat Simple_repeat 2 26 0 440 119 15 0 chr1 259678087 259678154 -22515510 - L1MA10 LINE L1 -38 6296 6229 2504 64 0 16 chr1 259678157 259678468 -22515196 - AluY SINE Alu -4 307 2 1750 162 3 3 chr1 259679355 259679645 -22514019 + AluJb SINE Alu 11 300 -12 1247 101 6 0 chr1 259679717 259679886 -22513778 + AluSg/x SINE Alu 141 310 0 586 272 242 6 chr1 259680052 259680412 -22513252 - MLT1K LTR MaLR -4 584 140 2154 105 0 7 chr1 259680616 259680910 -22512754 + AluSx SINE Alu 1 292 -20 2081 122 0 20 chr1 259680912 259681216 -22512448 + AluY SINE Alu 1 298 -13 511 230 87 66 chr1 259681516 259681886 -22511778 + MLT1H LTR MaLR 124 547 -2 2379 92 7 0 chr1 259682002 259682307 -22511357 + AluSp SINE Alu 1 307 -6 2022 118 4 0 chr1 259682530 259682852 -22510812 - AluSg SINE Alu 0 323 1 349 98 20 0 chr1 259682855 259682906 -22510758 - Alu SINE Alu -7 295 244 327 49 0 0 chr1 259683775 259683816 -22509848 + (CA)n Simple_repeat Simple_repeat 2 42 0 2146 99 48 3 chr1 259683822 259684116 -22509548 - AluSq SINE Alu -6 307 1 442 275 99 56 chr1 259684231 259684533 -22509131 - MLT1K LTR MaLR -137 451 137 563 60 5 18 chr1 259684625 259684843 -22508821 + AluY SINE Alu 1 308 -3 23 54 0 0 chr1 259685253 259685290 -22508374 + AT_rich Low_complexity Low_complexity 1 37 0 3117 213 64 107 chr1 259685642 259686370 -22507294 - L1ME2 LINE L1 -9 6155 5397 2211 101 10 0 chr1 259686370 259686666 -22506998 - AluSc SINE Alu -10 299 1 3117 213 64 107 chr1 259686666 259686700 -22506964 - L1ME2 LINE L1 -767 5397 5448 1914 120 9 62 chr1 259686700 259686893 -22506771 - AluSx SINE Alu 0 312 141 2402 91 0 0 chr1 259686893 259687202 -22506462 - AluY SINE Alu -2 309 1 1914 120 9 62 chr1 259687202 259687332 -22506332 - AluSx SINE Alu -171 141 6 3117 213 64 107 chr1 259687332 259687426 -22506238 - L1ME2 LINE L1 -715 5449 5352 2110 214 88 49 chr1 259687460 259687993 -22505671 + MLT2B3 LTR ERVL 1 554 0 246 346 19 0 chr1 259688045 259688149 -22505515 + L2 LINE L2 2701 2806 -508 238 336 66 8 chr1 259688321 259688443 -22505221 + L2 LINE L2 2929 3057 -215 2177 104 37 0 chr1 259688706 259689003 -22504661 + AluSx SINE Alu 1 308 -4 311 326 10 0 chr1 259689005 259689103 -22504561 + MIR3 SINE MIR 87 185 -23 1687 147 52 36 chr1 259689107 259689414 -22504250 - AluJo SINE Alu 0 312 1 1838 111 73 0 chr1 259689955 259690216 -22503448 + AluSg SINE Alu 1 280 -30 235 0 0 0 chr1 259690216 259690242 -22503422 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 21 82 0 0 chr1 259690261 259690310 -22503354 + AT_rich Low_complexity Low_complexity 1 49 0 647 186 8 16 chr1 259691003 259691127 -22502537 - FLAM_A SINE Alu -9 133 11 212 261 0 0 chr1 259691185 259691231 -22502433 - L3b LINE CR1 -88 1495 1450 551 235 80 80 chr1 259691265 259691601 -22502063 + L1ME4a LINE L1 5778 6113 -8 2052 99 0 7 chr1 259691687 259691971 -22501693 + AluSx SINE Alu 1 282 -30 267 31 0 0 chr1 259691999 259692031 -22501633 + (TG)n Simple_repeat Simple_repeat 1 32 0 3750 156 26 5 chr1 259692194 259692836 -22500828 + L1MB3 LINE L1 5486 6141 -42 1048 76 0 0 chr1 259692837 259692969 -22500695 + AluSq/x SINE Alu 1 132 -180 2045 101 13 36 chr1 259692972 259693278 -22500386 + AluSx SINE Alu 1 299 -13 293 143 0 0 chr1 259693278 259693327 -22500337 + L1MB2 LINE L1 6123 6171 0 1794 125 0 7 chr1 259693416 259693718 -22499946 - AluSc SINE Alu 0 300 1 376 261 25 34 chr1 259694033 259694152 -22499512 + L2 LINE L2 3191 3308 -5 249 269 0 0 chr1 259694362 259694414 -22499250 - L2 LINE L2 0 3313 3262 309 271 257 0 chr1 259694454 259694594 -22499070 + MIR SINE MIR 77 252 -10 207 0 0 0 chr1 259694649 259694672 -22498992 + (C)n Simple_repeat Simple_repeat 1 23 0 376 130 73 3 chr1 259694776 259694855 -22498809 + Alu SINE Alu 236 298 -3 293 143 0 0 chr1 259694855 259694904 -22498760 + L1MB2 LINE L1 6123 6171 0 2198 82 0 0 chr1 259694993 259695296 -22498368 - AluSx SINE Alu 0 303 1 671 80 0 0 chr1 259696840 259696928 -22496736 - AluS SINE Alu -224 89 2 341 375 0 28 chr1 259696928 259697072 -22496592 + MIR SINE MIR 60 199 -63 288 98 0 0 chr1 259697360 259697401 -22496263 + U5 snRNA snRNA 1 41 -75 2286 81 7 0 chr1 259697489 259697787 -22495877 - AluSp SINE Alu -13 300 1 1272 203 71 18 chr1 259697846 259697988 -22495676 - AluJo SINE Alu -16 296 163 2434 59 0 0 chr1 259697988 259698293 -22495371 - AluY SINE Alu -6 305 1 1272 203 71 18 chr1 259698293 259698431 -22495233 - AluJo SINE Alu -149 163 1 2588 146 13 18 chr1 259698753 259699204 -22494460 + L1MB3 LINE L1 5728 6176 -7 684 205 79 0 chr1 259700079 259700206 -22493458 - FRAM SINE Alu -39 137 1 1978 120 0 0 chr1 259700574 259700858 -22492806 + AluSx SINE Alu 1 284 -28 1294 208 108 46 chr1 259701000 259701443 -22492221 + MER110A LTR ERV1 40 491 0 183 373 29 29 chr1 259701636 259701738 -22491926 - MIR SINE MIR -69 139 38 274 125 83 0 chr1 259701834 259701882 -22491782 - MLT1C LTR MaLR 0 467 416 1371 121 70 0 chr1 259701922 259702137 -22491527 + LTR31 LTR ERV1 1 230 -389 431 83 0 0 chr1 259702144 259702204 -22491460 - Alu SINE Alu -251 60 1 2525 140 13 3 chr1 259702358 259702737 -22490927 + LTR31 LTR ERV1 237 619 0 1932 147 5 63 chr1 259702737 259702983 -22490681 - MLT1C LTR MaLR -51 416 196 1710 174 3 0 chr1 259702983 259703277 -22490387 - AluJo SINE Alu -17 295 1 1932 147 5 63 chr1 259703277 259703390 -22490274 - MLT1C LTR MaLR -271 196 78 426 120 74 93 chr1 259703405 259703513 -22490151 - MLT1C LTR MaLR -361 106 1 1788 164 0 0 chr1 259703838 259704119 -22489545 + AluJo SINE Alu 11 291 -21 234 151 19 0 chr1 259704803 259704856 -22488808 - L1MA4 LINE L1 -2 6298 6245 2269 92 0 3 chr1 259704866 259705170 -22488494 + AluSq SINE Alu 1 303 -10 841 251 66 7 chr1 259705201 259705472 -22488192 - L1ME3 LINE L1 -211 5951 5665 1177 157 54 10 chr1 259705633 259705837 -22487827 - AluJb SINE Alu -16 296 84 1629 166 0 54 chr1 259705917 259706009 -22487655 + AluJo SINE Alu 1 96 -216 2297 49 0 33 chr1 259706009 259706313 -22487351 + AluY SINE Alu 1 294 -17 1629 166 0 54 chr1 259706313 259706534 -22487130 + AluJo SINE Alu 96 297 -15 874 284 30 28 chr1 259706549 259706841 -22486823 - L1ME3 LINE L1 -519 5645 5355 1364 191 9 59 chr1 259706841 259707161 -22486503 - AluJo SINE Alu -8 304 1 874 284 30 28 chr1 259707161 259707239 -22486425 - L1ME3 LINE L1 -809 5355 5308 2197 109 0 0 chr1 259707239 259707541 -22486123 - AluSx SINE Alu -10 302 1 874 284 30 28 chr1 259707541 259707557 -22486107 - L1ME3 LINE L1 -856 5308 5294 1627 157 0 11 chr1 259708855 259709129 -22484535 - AluJb SINE Alu -6 306 36 1771 122 3 64 chr1 259709270 259709597 -22484067 + AluSx SINE Alu 1 307 -5 836 154 0 0 chr1 259710964 259711094 -22482570 - FLAM_C SINE Alu -3 130 1 893 260 53 19 chr1 259711163 259711619 -22482045 - MLT2E LTR ERVL -80 548 6 288 294 46 28 chr1 259711756 259711865 -22481799 + MIR SINE MIR 20 130 -78 2172 105 3 3 chr1 259712112 259712418 -22481246 + AluSq SINE Alu 1 306 -7 199 360 0 0 chr1 259712454 259712529 -22481135 + MIR SINE MIR 80 154 -108 722 226 0 0 chr1 259713043 259713176 -22480488 + AluJo SINE Alu 1 133 -169 2149 123 60 26 chr1 259713184 259713534 -22480130 - THE1B LTR MaLR -2 362 1 1155 152 0 0 chr1 259713534 259713699 -22479965 + AluJo SINE Alu 138 302 0 276 77 0 0 chr1 259713733 259713772 -22479892 + (CA)n Simple_repeat Simple_repeat 1 39 0 1256 216 33 23 chr1 259715059 259715360 -22478304 - AluJo SINE Alu -5 307 4 492 267 30 8 chr1 259715494 259715625 -22478039 + MIR SINE MIR 129 262 0 2322 61 0 10 chr1 259716306 259716602 -22477062 + AluY SINE Alu 1 293 -18 1767 98 49 8 chr1 259716605 259716871 -22476793 + AluSg1 SINE Alu 21 297 -12 241 256 43 6 chr1 259716969 259717107 -22476557 - MIR SINE MIR -5 257 49 1982 149 0 0 chr1 259717127 259717435 -22476229 - AluSx SINE Alu -4 308 1 286 246 164 9 chr1 259717521 259717631 -22476033 - L1ME4a LINE L1 -4 6117 5991 680 283 148 28 chr1 259719257 259719621 -22474043 - MLT1L LTR MaLR -14 601 194 294 341 16 24 chr1 259719989 259720115 -22473549 + L2 LINE L2 2688 2812 -502 397 295 94 76 chr1 259720145 259720337 -22473327 + L2 LINE L2 2923 3110 -203 2262 86 3 13 chr1 259720337 259720651 -22473013 - AluSq SINE Alu 0 313 3 397 295 94 76 chr1 259720651 259720841 -22472823 + L2 LINE L2 3110 3312 -1 473 268 45 0 chr1 259720887 259720999 -22472665 + MER5C DNA MER1_type 3 119 -205 1728 151 10 23 chr1 259721026 259721325 -22472339 - AluJo SINE Alu -17 295 1 2088 112 0 7 chr1 259721328 259721623 -22472041 - AluSq SINE Alu -14 299 7 182 186 116 0 chr1 259721760 259721803 -22471861 + MER5C DNA MER1_type 277 324 0 549 258 24 18 chr1 259721998 259722165 -22471499 + MIR SINE MIR 95 262 0 2121 68 0 11 chr1 259722413 259722693 -22470971 - AluY SINE Alu 0 311 35 1756 153 3 7 chr1 259722706 259723014 -22470650 - AluSq SINE Alu -6 307 1 2187 70 40 3 chr1 259723150 259723450 -22470214 + AluSq SINE Alu 1 311 -2 2565 48 0 0 chr1 259724047 259724358 -22469306 + AluY SINE Alu 1 311 0 1964 150 0 3 chr1 259724482 259724795 -22468869 + AluJo SINE Alu 1 312 0 193 322 51 66 chr1 259724805 259725078 -22468586 - L2 LINE L2 -1613 1701 1433 379 333 193 15 chr1 259725452 259725846 -22467818 - L2 LINE L2 0 3272 2809 1117 307 103 58 chr1 259725948 259726990 -22466674 - L2 LINE L2 -733 2581 1493 547 111 0 0 chr1 259727029 259727127 -22466537 - AluJb SINE Alu 0 307 210 196 296 0 0 chr1 259727186 259727230 -22466434 - MIR SINE MIR -164 98 55 276 311 118 0 chr1 259727231 259727350 -22466314 - L2 LINE L2 -1797 1517 1385 203 121 0 0 chr1 259727824 259727857 -22465807 - L2 LINE L2 0 3313 3281 530 261 9 0 chr1 259727927 259728038 -22465626 + L2 LINE L2 3190 3301 -12 1748 208 54 79 chr1 259728040 259728574 -22465090 + MER69 DNA AcHobo 1 521 -2005 383 185 0 0 chr1 259728576 259728641 -22465023 + MER69 DNA AcHobo 2461 2525 -1 360 278 110 106 chr1 259729002 259729247 -22464417 - L2 LINE L2 0 3272 3027 183 241 253 13 chr1 259729238 259729298 -22464366 + L3 LINE CR1 1462 1540 -37 304 236 115 85 chr1 259729298 259729463 -22464201 + MER5B DNA MER1_type 1 179 -10 1886 144 30 0 chr1 259729928 259730227 -22463437 - AluJb SINE Alu -4 308 1 1367 60 0 16 chr1 259730227 259730245 -22463419 - L1PA8 LINE L1 0 6172 6155 278 26 26 0 chr1 259730245 259730284 -22463380 + (TA)n Simple_repeat Simple_repeat 1 40 0 1367 60 0 16 chr1 259730284 259730447 -22463217 - L1PA8 LINE L1 -17 6155 5994 827 181 0 0 chr1 259730465 259730598 -22463066 - FLAM_A SINE Alu 0 133 1 3683 150 35 19 chr1 259730606 259730907 -22462757 - L1MB7 LINE L1 0 6184 5889 2351 75 0 3 chr1 259730907 259731212 -22462452 - AluY SINE Alu -7 304 1 3683 150 35 19 chr1 259731212 259731588 -22462076 - L1MB7 LINE L1 -295 5889 5496 1985 121 21 0 chr1 259731588 259731878 -22461786 - AluSx SINE Alu -16 296 1 2263 88 3 0 chr1 259731898 259732204 -22461460 - AluY SINE Alu -4 307 1 1482 161 30 37 chr1 259732224 259732523 -22461141 - AluJo SINE Alu -15 297 1 306 0 0 0 chr1 259732537 259732571 -22461093 + (ATATG)n Simple_repeat Simple_repeat 2 35 0 1794 184 26 26 chr1 259732573 259732954 -22460710 - L1MB7 LINE L1 -1184 4962 4582 268 216 0 0 chr1 259733152 259733203 -22460461 - L2 LINE L2 -12 3260 3210 2210 115 0 0 chr1 259733254 259733558 -22460106 + AluSx SINE Alu 1 304 -8 349 221 42 0 chr1 259733699 259733794 -22459870 - L1ME4a LINE L1 -38 6083 5985 314 255 82 10 chr1 259733813 259733911 -22459753 - MIR SINE MIR 0 262 158 189 107 0 0 chr1 259733911 259733939 -22459725 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 470 338 5 45 chr1 259733945 259734143 -22459521 - L2 LINE L2 -17 3296 3107 1323 229 75 49 chr1 259734233 259734644 -22459020 + LTR16A LTR ERVL 22 443 -7 1388 268 36 0 chr1 259734651 259735013 -22458651 + HERV16 LTR ERVL 1 375 -4621 1930 110 0 21 chr1 259735094 259735224 -22458440 + AluSg SINE Alu 1 132 -178 1838 122 49 26 chr1 259735224 259735528 -22458136 + AluSx SINE Alu 1 311 -1 1930 110 0 21 chr1 259735528 259735679 -22457985 + AluSg SINE Alu 132 276 -34 1838 263 89 53 chr1 259735679 259736451 -22457213 + HERV16 LTR ERVL 553 1352 -3644 2252 77 14 3 chr1 259736648 259736945 -22456719 + AluY SINE Alu 2 301 -10 3934 274 65 68 chr1 259736951 259737276 -22456388 + HERV16 LTR ERVL 1646 1970 -3026 1687 130 46 7 chr1 259737276 259737561 -22456103 - AluSx SINE Alu -16 296 1 3934 274 65 68 chr1 259737561 259737936 -22455728 + HERV16 LTR ERVL 1970 2345 -2651 2089 122 0 0 chr1 259737936 259738230 -22455434 + AluSg SINE Alu 1 294 -16 3934 274 65 68 chr1 259738230 259738534 -22455130 + HERV16 LTR ERVL 2345 2648 -2348 2280 68 27 3 chr1 259738534 259738829 -22454835 + AluY SINE Alu 1 302 -9 3934 274 65 68 chr1 259738829 259740099 -22453565 + HERV16 LTR ERVL 2648 3662 -1334 624 288 55 0 chr1 259740172 259740335 -22453329 + HERV16 LTR ERVL 4161 4332 -1432 1756 138 114 151 chr1 259740550 259740691 -22452973 + LOR1a LTR ERV1 1 146 -351 2410 86 0 10 chr1 259740691 259740994 -22452670 + AluSg SINE Alu 1 300 -10 1756 138 114 151 chr1 259740994 259741014 -22452650 + LOR1a LTR ERV1 146 165 -332 1938 119 13 75 chr1 259741014 259741146 -22452518 + AluSx SINE Alu 1 140 -172 1543 138 157 11 chr1 259741146 259741414 -22452250 + AluSg1 SINE Alu 1 307 -2 1938 119 13 75 chr1 259741414 259741599 -22452065 + AluSx SINE Alu 140 298 -14 1756 138 114 151 chr1 259741599 259741952 -22451712 + LOR1a LTR ERV1 165 497 0 892 334 20 41 chr1 259742047 259742189 -22451475 + HERV16 LTR ERVL 4782 4926 -838 1602 197 35 3 chr1 259742189 259742473 -22451191 + AluJb SINE Alu 1 293 -19 892 334 20 41 chr1 259742473 259742839 -22450825 + HERV16 LTR ERVL 4926 5279 -485 940 238 89 6 chr1 259743061 259743453 -22450211 + LTR16A LTR ERVL 1 449 -1 3875 247 73 41 chr1 259743453 259743736 -22449928 - L2 LINE L2 -281 3032 2759 2325 107 0 19 chr1 259743736 259744053 -22449611 + AluSx SINE Alu 1 311 -1 3875 247 73 41 chr1 259744053 259744574 -22449090 - L2 LINE L2 -554 2759 2256 2686 39 0 0 chr1 259744574 259744880 -22448784 + AluY SINE Alu 1 306 -5 3875 247 73 41 chr1 259744880 259745365 -22448299 - L2 LINE L2 -1057 2256 1683 258 227 15 15 chr1 259745318 259745384 -22448280 - MIR SINE MIR -94 168 103 * 1616 143 53 0 chr1 259745384 259745629 -22448035 + AluJb SINE Alu 1 258 -54 744 121 0 0 chr1 259745909 259746008 -22447656 - AluS SINE Alu -212 100 2 721 313 13 0 chr1 259746011 259746235 -22447429 - L1ME LINE L1 -418 5703 5477 2187 116 33 0 chr1 259746844 259747145 -22446519 - AluSx SINE Alu -1 311 1 1200 94 0 0 chr1 259747150 259747327 -22446337 - AluSp SINE Alu 0 313 137 540 192 131 0 chr1 259747385 259747484 -22446180 + FLAM_A SINE Alu 6 117 -25 2334 101 3 0 chr1 259747528 259747824 -22445840 + AluSp SINE Alu 5 301 -12 866 123 8 0 chr1 259748061 259748183 -22445481 - FLAM_C SINE Alu -20 123 1 437 255 37 78 chr1 259748190 259748319 -22445345 - L1ME LINE L1 -299 5822 5706 1799 180 3 3 chr1 259748319 259748608 -22445056 + AluJo SINE Alu 1 289 -23 437 255 37 78 chr1 259748608 259748721 -22444943 - L1ME LINE L1 -415 5706 5590 314 312 156 30 chr1 259749234 259749503 -22444161 + L2 LINE L2 2326 2628 -686 422 339 69 59 chr1 259749611 259750015 -22443649 + L2 LINE L2 2857 3264 -8 2258 130 0 0 chr1 259750063 259750364 -22443300 - AluSx SINE Alu -9 303 3 2450 86 0 7 chr1 259750678 259750982 -22442682 + AluSx SINE Alu 1 302 -10 1857 138 0 98 chr1 259752491 259752692 -22440972 + AluJo SINE Alu 1 220 -92 2313 103 3 0 chr1 259752692 259752982 -22440682 - AluSx SINE Alu -21 291 1 1857 138 0 98 chr1 259752982 259752997 -22440667 + AluJo SINE Alu 220 235 -77 2317 68 4 4 chr1 259752997 259753302 -22440362 - AluY SINE Alu 0 305 1 1857 138 0 98 chr1 259753302 259753409 -22440255 + AluJo SINE Alu 235 294 -18 2023 159 10 0 chr1 259753415 259753723 -22439941 + AluSx SINE Alu 1 311 -1 230 274 217 9 chr1 259755229 259755335 -22438329 + MIR SINE MIR 56 183 -79 616 313 28 21 chr1 259755721 259755966 -22437698 - MIR SINE MIR -14 248 4 2480 93 0 0 chr1 259756449 259756761 -22436903 - AluSx SINE Alu 0 312 1 768 242 169 79 chr1 259756916 259757383 -22436281 + MLT1J LTR MaLR 1 509 -2 1882 164 0 23 chr1 259757704 259758008 -22435656 + AluJo SINE Alu 1 297 -15 2453 89 0 3 chr1 259758650 259758954 -22434710 + AluSg SINE Alu 1 303 -7 244 193 18 18 chr1 259758959 259759016 -22434648 - MLT1K LTR MaLR -12 576 520 5316 0 0 0 chr1 259759137 259759156 -22434508 + L1PA10 LINE L1 5335 5353 -815 1944 150 3 19 chr1 259759156 259759470 -22434194 + AluSx SINE Alu 1 309 -3 5316 0 0 0 chr1 259759470 259759542 -22434122 + L1PA10 LINE L1 5353 5424 -744 2519 76 3 0 chr1 259759542 259759845 -22433819 + AluSp SINE Alu 3 306 -7 2503 74 0 0 chr1 259759845 259760141 -22433523 + AluY SINE Alu 1 296 -15 5316 0 0 0 chr1 259760141 259760238 -22433426 + L1PA10 LINE L1 5423 5519 -649 2312 113 0 10 chr1 259760238 259760548 -22433116 + AluSx SINE Alu 1 307 -5 5316 0 0 0 chr1 259760548 259760838 -22432826 + L1PA10 LINE L1 5519 5808 -360 2356 109 3 6 chr1 259760838 259761149 -22432515 + AluSx SINE Alu 1 310 -2 5316 0 0 0 chr1 259761149 259761211 -22432453 + L1PA10 LINE L1 5808 5869 -299 2851 13 0 0 chr1 259761211 259761517 -22432147 + AluYa5 SINE Alu 2 307 -4 5316 0 0 0 chr1 259761517 259761876 -22431788 + L1PA10 LINE L1 5869 6168 0 2365 87 0 7 chr1 259761899 259762199 -22431465 - AluSc SINE Alu -11 298 1 376 261 25 34 chr1 259762514 259762633 -22431031 + L2 LINE L2 3191 3308 -5 247 269 0 0 chr1 259762843 259762895 -22430769 - L2 LINE L2 0 3313 3262 305 271 257 0 chr1 259762935 259763075 -22430589 + MIR SINE MIR 77 252 -10 2239 116 7 7 chr1 259763804 259764114 -22429550 + AluSx SINE Alu 1 310 -2 2185 149 7 0 chr1 259764684 259764993 -22428671 - AluJo SINE Alu -1 311 1 1759 171 3 19 chr1 259764993 259765303 -22428361 - AluJo SINE Alu -7 305 1 2294 105 3 0 chr1 259765668 259765974 -22427690 - AluSp SINE Alu -6 307 1 373 150 0 103 chr1 259766361 259766444 -22427220 - MER58 DNA MER1_type -5 2415 2325 2481 74 0 7 chr1 259766444 259766754 -22426910 - AluY SINE Alu -1 310 3 373 150 0 103 chr1 259766754 259766792 -22426872 - MER58 DNA MER1_type -95 2325 100 1003 198 0 0 chr1 259766799 259766971 -22426693 + FRAM SINE Alu 1 170 -6 2348 107 0 3 chr1 259766975 259767274 -22426390 + AluSc SINE Alu 1 298 -11 881 286 0 0 chr1 259767421 259767631 -22426033 + MIR SINE MIR 45 254 -8 2388 83 7 10 chr1 259770077 259770377 -22423287 - AluSq SINE Alu -13 300 2 2067 159 0 0 chr1 259770384 259770692 -22422972 - AluJb SINE Alu 0 312 5 1373 182 47 30 chr1 259770734 259771031 -22422633 + AluJo SINE Alu 1 302 -10 2399 84 7 0 chr1 259771041 259771349 -22422315 - AluY SINE Alu -1 310 1 309 243 81 27 chr1 259771354 259771465 -22422199 + MER103 DNA DNA 48 164 -2 2115 113 4 0 chr1 259771811 259772106 -22421558 - AluSx SINE Alu 0 304 9 1993 78 52 75 chr1 259772134 259772442 -22421222 - AluY SINE Alu -10 301 1 505 211 383 0 chr1 259772469 259772644 -22421020 + MIR SINE MIR 21 262 0 2265 124 0 9 chr1 259774067 259774382 -22419282 - AluSx SINE Alu 0 312 1 424 235 157 13 chr1 259774718 259774871 -22418793 - MER104 DNA Tc2 0 180 6 2106 130 10 0 chr1 259775013 259775320 -22418344 + AluJo SINE Alu 1 310 -2 368 133 0 27 chr1 259775322 259775397 -22418267 + (GGAGA)n Simple_repeat Simple_repeat 2 74 0 216 0 0 0 chr1 259775417 259775441 -22418223 + (CAAAG)n Simple_repeat Simple_repeat 2 25 0 1837 146 0 28 chr1 259776094 259776381 -22417283 - AluSx SINE Alu -16 296 18 891 236 0 6 chr1 259776622 259776796 -22416868 + FAM SINE Alu 1 173 -2 2268 129 0 0 chr1 259776798 259777101 -22416563 + AluSx SINE Alu 1 303 -9 357 277 57 14 chr1 259777138 259777279 -22416385 - L1ME4a LINE L1 -15 6106 5960 2061 145 0 0 chr1 259777456 259777752 -22415912 + AluJo SINE Alu 1 296 -16 505 310 185 38 chr1 259777752 259778043 -22415621 - L1ME4a LINE L1 -243 5927 5680 1459 164 137 0 chr1 259778043 259778306 -22415358 - AluJb SINE Alu -3 299 1 505 310 185 38 chr1 259778306 259778565 -22415099 - L1ME4a LINE L1 -490 5680 5296 419 182 85 61 chr1 259778577 259778711 -22414953 - L1ME4a LINE L1 -840 5306 5166 2331 97 13 0 chr1 259778711 259779009 -22414655 - AluSg SINE Alu -8 302 1 419 182 85 61 chr1 259779009 259779039 -22414625 - L1ME4a LINE L1 -980 5166 5138 247 264 46 73 chr1 259779014 259779317 -22414347 - L1MC5 LINE L1 -36 7925 7631 * 2171 117 10 7 chr1 259780456 259780754 -22412910 - AluSx SINE Alu -13 299 1 2278 98 6 19 chr1 259780757 259781073 -22412591 - AluSx SINE Alu 0 312 1 827 175 84 0 chr1 259782497 259782663 -22411001 + MER21B LTR ERV1 199 378 -485 768 263 68 11 chr1 259782692 259782958 -22410706 + MER21B LTR ERV1 450 730 -133 186 103 0 0 chr1 259783134 259783163 -22410501 + (TTTCG)n Simple_repeat Simple_repeat 2 30 0 1320 76 87 5 chr1 259783163 259783348 -22410316 - L1PA10 LINE L1 -19 6149 5950 2389 85 0 3 chr1 259783735 259784030 -22409634 + AluY SINE Alu 1 294 -17 1708 175 24 10 chr1 259784336 259784502 -22409162 - AluJo SINE Alu -6 306 133 2509 75 0 0 chr1 259784502 259784807 -22408857 - AluY SINE Alu -6 305 1 1708 175 24 10 chr1 259784807 259784937 -22408727 - AluJo SINE Alu -179 133 6 1830 170 17 0 chr1 259784944 259785233 -22408431 - AluJo SINE Alu -18 294 1 806 257 0 6 chr1 259785300 259785471 -22408193 - MIR SINE MIR -89 173 4 252 229 115 31 chr1 259785518 259785614 -22408050 + L2 LINE L2 3198 3301 -12 2230 107 0 10 chr1 259789045 259789353 -22404311 - AluSp SINE Alu -3 310 6 236 200 20 0 chr1 259789852 259789902 -22403762 + G-rich Low_complexity Low_complexity 3 53 0 2167 129 3 7 chr1 259790439 259790742 -22402922 - AluSx SINE Alu -10 302 1 190 200 50 0 chr1 259791665 259791705 -22401959 + L2 LINE L2 3267 3308 -5 442 324 103 32 chr1 259792353 259792828 -22400836 - L2 LINE L2 -1016 2298 1790 774 229 68 5 chr1 259793098 259793369 -22400295 - MER46C DNA MER2_type 0 338 14 1878 148 11 43 chr1 259793605 259793755 -22399909 + L1PA16 LINE L1 5806 5959 -207 2193 109 120 38 chr1 259793755 259794148 -22399516 + MSTA LTR MaLR 3 427 -1 1878 148 11 43 chr1 259794148 259794369 -22399295 + L1PA16 LINE L1 5959 6165 -1 389 247 11 11 chr1 259794532 259794625 -22399039 + L2 LINE L2 3138 3230 -42 288 0 0 0 chr1 259794830 259794862 -22398802 + (CA)n Simple_repeat Simple_repeat 2 33 0 1816 133 0 24 chr1 259795356 259795672 -22397992 - AluSx SINE Alu 0 312 9 623 153 17 0 chr1 259796104 259796222 -22397442 - FRAM SINE Alu -8 168 49 2098 108 0 22 chr1 259798102 259798417 -22395247 - AluSg SINE Alu -2 308 1 1158 180 22 45 chr1 259799028 259799295 -22394369 - AluJo SINE Alu -51 261 1 623 124 0 0 chr1 259799347 259799444 -22394220 - AluSp/q SINE Alu -7 306 210 225 329 0 61 chr1 259799585 259799667 -22393997 - MIR SINE MIR -116 92 16 2282 84 19 7 chr1 259800360 259800669 -22392995 - AluSq SINE Alu 0 313 1 2153 78 4 4 chr1 259801120 259801437 -22392227 - AluY SINE Alu 0 317 1 191 348 100 41 chr1 259802687 259803178 -22390486 + L2 LINE L2 1794 2313 -1001 1495 62 0 0 chr1 259803208 259803401 -22390263 - AluY SINE Alu 0 311 119 1082 175 11 49 chr1 259804109 259804395 -22389269 - AluY SINE Alu -36 275 1 468 221 133 0 chr1 259804460 259804618 -22389046 + HAL1 LINE L1 1987 2165 -342 1332 181 0 0 chr1 259804618 259804856 -22388808 + AluSx SINE Alu 1 238 -74 1503 0 0 0 chr1 259805523 259805690 -22387974 + (G)n Simple_repeat Simple_repeat 1 167 0 763 163 8 0 chr1 259805808 259805931 -22387733 - FLAM_C SINE Alu -9 124 1 1892 105 3 27 chr1 259805939 259806233 -22387431 - AluSc SINE Alu -22 287 1 2267 70 13 0 chr1 259806233 259806534 -22387130 - AluY SINE Alu -4 307 3 1995 134 0 10 chr1 259806536 259806842 -22386822 - AluSx SINE Alu -9 303 1 180 298 70 0 chr1 259806842 259806899 -22386765 + L2 LINE L2 2686 2746 -568 196 316 26 61 chr1 259806979 259807093 -22386571 + L2 LINE L2 2924 3033 -239 372 258 23 76 chr1 259807479 259807611 -22386053 + MIR SINE MIR 33 157 -105 1716 171 0 3 chr1 259807702 259807989 -22385675 - AluJo SINE Alu -15 297 12 2012 102 17 20 chr1 259808109 259808403 -22385261 + AluSg SINE Alu 1 293 -17 1150 135 47 5 chr1 259809055 259809248 -22384416 + AluSg/x SINE Alu 85 285 -25 2303 84 3 0 chr1 259809271 259809570 -22384094 - AluSg SINE Alu -10 300 1 22 35 0 0 chr1 259811298 259811327 -22382337 + AT_rich Low_complexity Low_complexity 1 29 0 661 274 63 6 chr1 259811684 259811859 -22381805 + MIR SINE MIR 4 188 -74 980 161 0 0 chr1 259811872 259812027 -22381637 + AluSx SINE Alu 1 155 -157 2985 128 61 80 chr1 259812027 259812116 -22381548 - LTR14B LTR ERVK 0 608 519 2111 82 14 7 chr1 259812116 259812407 -22381257 + AluY SINE Alu 1 293 -18 2985 128 61 80 chr1 259812407 259812920 -22380744 - LTR14B LTR ERVK -89 519 17 2396 311 32 38 chr1 259812923 259813234 -22380430 - HERVKC4 LTR ERVK -7 7377 7066 2478 46 0 0 chr1 259813234 259813539 -22380125 - AluY SINE Alu -6 305 1 2396 311 32 38 chr1 259813539 259815323 -22378341 - HERVKC4 LTR ERVK -318 7066 3528 * 6863 93 15 3 chr1 259815312 259816262 -22377402 - HERVK14 LTR ERVK -1633 4312 3352 407 244 51 26 chr1 259816264 259816420 -22377244 + L1M4 LINE L1 3805 3964 -2182 7953 95 104 32 chr1 259816445 259817736 -22375928 - SVA Other Other 0 1386 3 14787 103 4 17 chr1 259817764 259819802 -22373862 - HERVK14 LTR ERVK -2580 3365 1353 8392 113 8 21 chr1 259819801 259820023 -22373641 - HERVK14 LTR ERVK -4745 1200 977 * 297 0 0 0 chr1 259820023 259820056 -22373608 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2137 44 3 58 chr1 259820057 259820352 -22373312 - AluY SINE Alu -32 279 1 8392 113 8 21 chr1 259820352 259821165 -22372499 - HERVK14 LTR ERVK -4968 977 178 2343 82 0 0 chr1 259821165 259821469 -22372195 + AluY SINE Alu 1 304 -7 8392 113 8 21 chr1 259821469 259821645 -22372019 - HERVK14 LTR ERVK -5767 178 1 3165 116 68 86 chr1 259821645 259822248 -22371416 - LTR14B LTR ERVK 0 608 17 2031 105 3 7 chr1 259822274 259822560 -22371104 + AluSx SINE Alu 12 296 -16 1548 178 39 14 chr1 259822563 259822923 -22370741 + L1M4 LINE L1 4864 5232 -914 461 221 221 0 chr1 259822923 259823036 -22370628 + FLAM_A SINE Alu 1 138 -4 2040 102 3 16 chr1 259823042 259823346 -22370318 + AluSq SINE Alu 9 308 -5 557 316 41 9 chr1 259823588 259823806 -22369858 + MIR SINE MIR 7 231 -31 1196 90 0 0 chr1 259824307 259824462 -22369202 - AluSq SINE Alu -158 155 1 38 51 0 0 chr1 259824571 259824630 -22369034 + AT_rich Low_complexity Low_complexity 1 59 0 2048 119 7 0 chr1 259824647 259824942 -22368722 - AluSx SINE Alu -12 300 4 2232 243 113 35 chr1 259824942 259825917 -22367747 - HAL1 LINE L1 -763 1744 693 348 216 135 54 chr1 259825936 259826047 -22367617 - L1MC4 LINE L1 -21 8021 7902 313 344 0 0 chr1 259826049 259826139 -22367525 - L1MC4 LINE L1 -1339 6703 6614 1389 217 51 53 chr1 259826163 259826201 -22367463 - L1MC4 LINE L1 -149 7893 7856 599 53 13 0 chr1 259826201 259826276 -22367388 - MADE1 DNA Mariner 0 80 5 1389 217 51 53 chr1 259826276 259826607 -22367057 - L1MC4 LINE L1 -186 7856 7523 2180 96 3 7 chr1 259826607 259826908 -22366756 - AluSp SINE Alu -13 300 1 1389 217 51 53 chr1 259826908 259827008 -22366656 - L1MC4 LINE L1 -519 7523 7424 2033 131 0 0 chr1 259827422 259827720 -22365944 + AluSx SINE Alu 11 308 -4 644 149 0 52 chr1 259827720 259827854 -22365810 - L1MB7 LINE L1 -9 6175 6049 2411 169 26 39 chr1 259827854 259828344 -22365320 - MER66B LTR ERV1 0 486 3 791 212 76 34 chr1 259829077 259829209 -22364455 - MER5C DNA MER1_type 0 324 176 1614 140 58 4 chr1 259829209 259829487 -22364177 + AluJo SINE Alu 2 294 -18 791 212 76 34 chr1 259829487 259829590 -22364074 - MER5C DNA MER1_type -148 176 79 24 0 0 0 chr1 259829821 259829845 -22363819 + GC_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr1 259829874 259829919 -22363745 + GC_rich Low_complexity Low_complexity 1 45 0 2611 69 116 12 chr1 259830222 259830628 -22363036 - LTR7 LTR ERV1 -2 448 1 367 187 6 170 chr1 259830866 259831037 -22362627 + MER69A DNA AcHobo 34 176 -1 528 216 236 20 chr1 259831512 259831766 -22361898 - L2 LINE L2 -98 3215 2907 229 202 155 70 chr1 259832096 259832225 -22361439 + LTR41 LTR ERVL 118 257 -516 389 248 269 7 chr1 259832598 259832747 -22360917 + MIR3 SINE MIR 17 204 -4 1452 141 130 22 chr1 259833767 259834037 -22359627 + AluJo SINE Alu 1 299 -3 1726 128 22 45 chr1 259834888 259835200 -22358464 - AluJb SINE Alu -7 305 1 1884 139 13 10 chr1 259835658 259835961 -22357703 + AluSq SINE Alu 1 304 -9 21 36 0 0 chr1 259835972 259836000 -22357664 + AT_rich Low_complexity Low_complexity 1 28 0 207 337 11 0 chr1 259836354 259836446 -22357218 - MIR SINE MIR -127 135 43 562 323 131 22 chr1 259837894 259838207 -22355457 - L2 LINE L2 0 3272 2926 558 279 127 59 chr1 259838349 259838467 -22355197 - L2 LINE L2 -499 2815 2706 1568 129 17 58 chr1 259838467 259838603 -22355061 + AluSx SINE Alu 13 153 -159 2526 40 0 0 chr1 259838603 259838903 -22354761 + AluY SINE Alu 11 310 -1 1568 129 17 58 chr1 259838903 259839061 -22354603 + AluSx SINE Alu 153 295 -17 558 279 127 59 chr1 259839061 259839382 -22354282 - L2 LINE L2 -608 2706 2346 408 224 161 14 chr1 259839446 259839589 -22354075 - MLT1J LTR MaLR -339 172 9 2152 86 36 3 chr1 259839734 259840035 -22353629 - AluSx SINE Alu -1 311 1 299 295 100 89 chr1 259840242 259840612 -22353052 + L2 LINE L2 2890 3263 -9 2202 101 0 3 chr1 259840895 259841193 -22352471 - AluSx SINE Alu -15 297 1 1726 128 39 7 chr1 259841210 259841491 -22352173 - AluJb SINE Alu -3 309 20 530 230 9 9 chr1 259842696 259842809 -22350855 - MIR SINE MIR -98 164 52 707 185 15 8 chr1 259842848 259842978 -22350686 - FLAM_C SINE Alu -2 131 1 226 294 24 12 chr1 259845050 259845135 -22348529 + L3b LINE CR1 1144 1229 -354 225 286 48 48 chr1 259845314 259845440 -22348224 - L2 LINE L2 -15 3257 3132 1784 150 54 0 chr1 259845829 259846123 -22347541 + AluSx SINE Alu 1 310 -2 1141 216 24 8 chr1 259847218 259847468 -22346196 + L1MB8 LINE L1 5920 6173 -5 2246 92 0 0 chr1 259847712 259848004 -22345660 + AluSc SINE Alu 2 293 -16 329 183 43 78 chr1 259848153 259848268 -22345396 + L1MCa LINE L1 1971 2081 -4345 349 381 29 7 chr1 259848993 259849132 -22344532 - MIR SINE MIR -72 190 49 228 279 186 23 chr1 259849286 259849415 -22344249 - L2 LINE L2 -1 3271 3122 2145 91 3 14 chr1 259849440 259849737 -22343927 + AluSq SINE Alu 1 294 -19 2134 108 3 0 chr1 259850117 259850412 -22343252 - AluSx SINE Alu -16 296 1 1413 154 50 161 chr1 259850467 259850851 -22342813 + MER58B DNA MER1_type 1 341 0 2086 132 7 0 chr1 259850914 259851224 -22342440 + AluSx SINE Alu 1 312 0 1787 126 54 0 chr1 259851905 259852183 -22341481 + AluSg1 SINE Alu 1 293 -16 1804 178 87 21 chr1 259852183 259852638 -22341026 - L1M3 LINE L1 -510 5670 5190 1133 144 0 6 chr1 259852638 259852805 -22340859 - FAM SINE Alu -9 166 1 1804 178 87 21 chr1 259852805 259852828 -22340836 - L1M3 LINE L1 -990 5190 5170 926 170 44 0 chr1 259853002 259853161 -22340503 + FRAM SINE Alu 1 163 -13 2257 100 0 0 chr1 259853161 259853461 -22340203 + AluY SINE Alu 1 300 -11 2455 68 0 3 chr1 259853463 259853773 -22339891 + AluY SINE Alu 1 309 -2 2299 83 0 3 chr1 259853773 259854073 -22339591 + AluSc SINE Alu 1 300 -9 180 0 0 0 chr1 259854238 259854258 -22339406 + (A)n Simple_repeat Simple_repeat 1 20 0 694 255 148 26 chr1 259854486 259854796 -22338868 - L2 LINE L2 -5 3267 2920 1615 168 0 76 chr1 259854876 259855031 -22338633 - AluJo SINE Alu -21 291 171 2536 59 0 0 chr1 259855031 259855337 -22338327 - AluY SINE Alu -5 306 1 1615 168 0 76 chr1 259855337 259855496 -22338168 - AluJo SINE Alu -141 171 1 628 157 33 8 chr1 259855778 259855899 -22337765 + L1MC3 LINE L1 7469 7592 -193 1520 198 58 24 chr1 259855909 259855960 -22337704 + L1MB1 LINE L1 5777 5825 -343 1893 153 0 16 chr1 259855960 259856273 -22337391 + AluJb SINE Alu 1 308 -4 1520 198 58 24 chr1 259856273 259856600 -22337064 + L1MB1 LINE L1 5825 6168 0 796 141 94 31 chr1 259856602 259856793 -22336871 + L1MC3 LINE L1 7573 7775 -10 326 247 82 0 chr1 259856808 259856905 -22336759 + L1ME4a LINE L1 6006 6110 -11 2152 108 0 7 chr1 259857164 259857469 -22336195 - AluSx SINE Alu -9 303 1 463 309 46 41 chr1 259857546 259857915 -22335749 - L1ME4a LINE L1 -11 6110 5740 343 267 44 30 chr1 259857938 259858073 -22335591 - L2 LINE L2 -1 3312 3176 186 299 65 26 chr1 259858062 259858139 -22335525 + MIR SINE MIR 142 221 -41 * 324 0 0 0 chr1 259859016 259859052 -22334612 + (TG)n Simple_repeat Simple_repeat 2 37 0 600 224 153 9 chr1 259860154 259860382 -22333282 - LTR37A LTR ERV1 -89 337 77 307 192 110 14 chr1 259860566 259860639 -22333025 - L1ME4a LINE L1 -1 6120 6041 543 225 93 71 chr1 259860690 259860929 -22332735 - L1ME3A LINE L1 -55 6115 5883 2263 92 0 3 chr1 259860929 259861233 -22332431 - AluSx SINE Alu -9 303 1 543 225 93 71 chr1 259861233 259861251 -22332413 - L1ME3A LINE L1 -287 5883 5867 2120 116 0 7 chr1 259861251 259861553 -22332111 - AluSx SINE Alu -12 300 1 543 225 93 71 chr1 259861553 259861658 -22332006 - L1ME3A LINE L1 -303 5867 5725 390 223 48 19 chr1 259862724 259862827 -22330837 + L2 LINE L2 3205 3310 -3 186 296 100 52 chr1 259862832 259863062 -22330602 - L2 LINE L2 -173 3099 2859 315 188 40 50 chr1 259863709 259863810 -22329854 + MIR SINE MIR 135 234 -28 240 78 31 172 chr1 259867424 259867488 -22326176 + LTR49 LTR ERV1 161 215 -380 2001 181 60 50 chr1 259869944 259870376 -22323288 + LTR22B LTR ERVK 1 440 -52 2179 81 14 0 chr1 259870376 259870659 -22323005 - AluY SINE Alu -23 288 2 2001 181 60 50 chr1 259870659 259870708 -22322956 + LTR22B LTR ERVK 440 487 -5 2085 129 10 0 chr1 259871008 259871318 -22322346 - AluSq SINE Alu 0 313 1 1976 128 17 3 chr1 259871852 259872150 -22321514 + AluSx SINE Alu 1 302 -10 267 300 25 0 chr1 259872745 259872825 -22320839 + MIR SINE MIR 119 200 -62 181 196 43 22 chr1 259873133 259873179 -22320485 + L2 LINE L2 3210 3256 -16 744 282 226 12 chr1 259873550 259873965 -22319699 - L2 LINE L2 -1 3312 2809 1382 309 127 15 chr1 259873985 259874671 -22318993 - L2 LINE L2 -665 2649 1887 794 214 11 17 chr1 259874850 259875028 -22318636 + MIR SINE MIR 48 224 -38 818 156 37 0 chr1 259875814 259875949 -22317715 - FLAM_C SINE Alu -3 140 1 180 0 0 0 chr1 259875967 259875987 -22317677 + (T)n Simple_repeat Simple_repeat 1 20 0 729 67 0 0 chr1 259875997 259876086 -22317578 + AluSq/x SINE Alu 16 104 -209 214 283 17 0 chr1 259876777 259876837 -22316827 + L2 LINE L2 3247 3307 -6 22 0 0 0 chr1 259877012 259877034 -22316630 + GC_rich Low_complexity Low_complexity 1 22 0 2373 84 3 0 chr1 259877951 259878261 -22315403 - AluSq SINE Alu -2 311 1 205 216 0 0 chr1 259878547 259878584 -22315080 + (TA)n Simple_repeat Simple_repeat 2 38 0 447 19 0 0 chr1 259878585 259878637 -22315027 + (TG)n Simple_repeat Simple_repeat 1 52 0 2084 122 6 6 chr1 259879271 259879582 -22314082 - AluSx SINE Alu -1 311 1 1376 178 52 0 chr1 259880002 259880288 -22313376 + MER33 DNA MER1_type 23 323 -1 313 297 63 18 chr1 259880773 259880884 -22312780 - MIR SINE MIR -29 233 118 1768 138 25 0 chr1 259882684 259882983 -22310681 - AluJo SINE Alu 0 306 1 2256 98 7 0 chr1 259883271 259883577 -22310087 + AluSx SINE Alu 1 308 -4 902 202 108 9 chr1 259883593 259883806 -22309858 - MIR SINE MIR -25 237 4 270 247 187 67 chr1 259883870 259884020 -22309644 - L2 LINE L2 -29 3284 3117 1953 155 3 0 chr1 259884475 259884784 -22308880 + AluJo SINE Alu 1 310 -2 193 295 51 0 chr1 259885839 259885917 -22307747 - MIR SINE MIR -78 130 49 410 247 27 53 chr1 259887716 259887866 -22305798 - MIR SINE MIR -54 208 63 2103 100 6 41 chr1 259888030 259888350 -22305314 + AluSx SINE Alu 1 309 -3 225 219 78 0 chr1 259889130 259889213 -22304451 - MIR SINE MIR -57 205 112 596 186 48 90 chr1 259889254 259889289 -22304375 + MER104 DNA MER2_type 1 36 -1862 2229 91 7 3 chr1 259889289 259889597 -22304067 - AluSg SINE Alu -1 309 1 596 186 48 90 chr1 259889597 259889704 -22303960 + MER104 DNA MER2_type 36 136 -1762 2310 70 0 7 chr1 259889704 259890002 -22303662 + AluSp SINE Alu 1 296 -17 596 186 48 90 chr1 259890002 259890046 -22303618 + MER104 DNA MER2_type 136 180 0 268 265 214 0 chr1 259891228 259891326 -22302338 - L2 LINE L2 -4 3268 3150 711 201 30 0 chr1 259892036 259892205 -22301459 - MER104 DNA Tc2 0 180 7 2209 99 0 10 chr1 259892318 259892630 -22301034 - AluSg1 SINE Alu 0 309 1 380 189 0 11 chr1 259893805 259893895 -22299769 + (CA)n Simple_repeat Simple_repeat 2 90 0 1744 79 9 0 chr1 259894437 259894664 -22299000 - AluSq SINE Alu -78 235 7 1942 154 6 6 chr1 259895418 259895730 -22297934 + AluJb SINE Alu 1 312 0 2250 103 3 3 chr1 259896273 259896585 -22297079 - AluSq SINE Alu -1 312 1 505 276 47 24 chr1 259896777 259896947 -22296717 - MIR SINE MIR -54 208 35 413 253 118 56 chr1 259897766 259897944 -22295720 - MIR3 SINE MIR -11 197 9 225 0 0 0 chr1 259898498 259898523 -22295141 + (CCTA)n Simple_repeat Simple_repeat 1 25 0 * 342 0 0 0 chr1 259898522 259898560 -22295104 + (CA)n Simple_repeat Simple_repeat 2 39 0 371 373 30 12 chr1 259900883 259901052 -22292612 + MIR SINE MIR 91 262 0 293 207 58 35 chr1 259902849 259902936 -22290728 + MIR3 SINE MIR 94 182 -26 2426 65 3 0 chr1 259903057 259903364 -22290300 + AluSp SINE Alu 1 308 -5 1743 115 81 27 chr1 259903983 259904278 -22289386 - AluSx SINE Alu -1 311 1 2224 69 0 16 chr1 259904450 259904755 -22288909 + AluY SINE Alu 1 300 -11 2113 130 0 0 chr1 259904809 259905110 -22288554 - AluSx SINE Alu -5 307 7 1892 140 0 28 chr1 259905282 259905419 -22288245 + AluSx SINE Alu 1 140 -172 2159 88 23 7 chr1 259905419 259905724 -22287940 + AluY SINE Alu 1 310 -1 1892 140 0 28 chr1 259905724 259905907 -22287757 + AluSx SINE Alu 140 312 0 220 70 47 0 chr1 259908821 259908864 -22284800 + GA-rich Low_complexity Low_complexity 2 46 0 632 98 0 0 chr1 259909456 259909538 -22284126 - AluSp/q SINE Alu -16 297 216 205 254 56 28 chr1 259909538 259909609 -22284055 - MIR SINE MIR -116 146 74 529 148 10 10 chr1 259909876 259909977 -22283687 - MER53 DNA DNA -86 103 3 1096 257 9 67 chr1 259910992 259911127 -22282537 + LTR32 LTR ERVL 149 290 -181 2005 140 0 0 chr1 259911127 259911434 -22282230 + AluSx SINE Alu 1 307 -5 1096 257 9 67 chr1 259911434 259911641 -22282023 + LTR32 LTR ERVL 290 471 0 287 249 74 124 chr1 259911657 259911713 -22281951 + MIR SINE MIR 49 106 -156 2118 80 0 52 chr1 259911713 259911753 -22281911 - AluSq SINE Alu 0 313 272 198 0 0 0 chr1 259911753 259911775 -22281889 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2118 80 0 52 chr1 259911775 259912060 -22281604 - AluSq SINE Alu -41 272 5 812 154 0 29 chr1 259912067 259912203 -22281461 - FLAM_C SINE Alu -1 132 1 287 249 74 124 chr1 259912203 259912355 -22281309 + MIR SINE MIR 112 254 -8 312 281 44 56 chr1 259912362 259912502 -22281162 - L1M4 LINE L1 -2913 3233 3093 2360 54 0 3 chr1 259912502 259912826 -22280838 - AluY SINE Alu 0 323 1 312 281 44 56 chr1 259912826 259912844 -22280820 - L1M4 LINE L1 -3053 3093 3076 264 283 52 9 chr1 259912903 259912931 -22280733 - L1M4 LINE L1 -751 5395 5370 1554 211 3 19 chr1 259912931 259913111 -22280553 - AluJb SINE Alu 0 312 138 1907 113 0 80 chr1 259913111 259913438 -22280226 - AluSx SINE Alu -11 301 1 1554 211 3 19 chr1 259913438 259913574 -22280090 - AluJb SINE Alu -174 138 1 264 283 52 9 chr1 259913574 259913757 -22279907 - L1M4 LINE L1 -776 5370 5175 354 263 242 21 chr1 259913776 259913966 -22279698 - L1M4 LINE L1 -1543 4603 4372 1904 102 70 0 chr1 259914012 259914297 -22279367 - AluSx SINE Alu -7 305 1 366 334 43 13 chr1 259914403 259914705 -22278959 - L1M4 LINE L1 -1853 4293 3983 2263 90 3 0 chr1 259914738 259915038 -22278626 + AluSg SINE Alu 1 301 -9 1668 151 44 4 chr1 259915047 259915357 -22278307 + AluJo SINE Alu 1 321 0 821 240 132 48 chr1 259915372 259915508 -22278156 + L1ME3A LINE L1 5488 5611 -553 1766 144 10 20 chr1 259915508 259915807 -22277857 + AluJo SINE Alu 1 296 -16 1991 112 0 40 chr1 259915809 259916132 -22277532 + AluSx SINE Alu 1 310 -2 821 240 132 48 chr1 259916132 259916457 -22277207 + L1ME3A LINE L1 5611 5995 -169 2058 115 0 22 chr1 259917217 259917529 -22276135 + AluSx SINE Alu 1 305 -7 336 330 17 0 chr1 259918014 259918129 -22275535 + MIR SINE MIR 77 193 -69 241 247 15 27 chr1 259918265 259918339 -22275325 - MIR SINE MIR -103 105 44 1987 146 7 0 chr1 259919663 259919972 -22273692 - AluSq SINE Alu -2 311 1 2198 88 0 0 chr1 259919979 259920329 -22273335 - AluSx SINE Alu 0 350 1 5722 140 22 89 chr1 259920553 259920893 -22272771 + L1MC1 LINE L1 4979 5340 -993 1537 157 52 42 chr1 259920893 259921199 -22272465 - AluJb SINE Alu -3 309 1 5722 140 22 89 chr1 259921199 259921328 -22272336 + L1MC1 LINE L1 5340 5476 -857 2228 105 0 3 chr1 259921328 259921641 -22272023 + AluSq SINE Alu 1 312 -1 5722 140 22 89 chr1 259921641 259921663 -22272001 + L1MC1 LINE L1 5476 5498 -835 2293 62 0 16 chr1 259921663 259921971 -22271693 + AluY SINE Alu 1 303 -8 5722 140 22 89 chr1 259921971 259922746 -22270918 + L1MC1 LINE L1 5498 6148 -185 2110 94 3 11 chr1 259922746 259923060 -22270604 + AluSx SINE Alu 1 312 0 5722 140 22 89 chr1 259923060 259923235 -22270429 + L1MC1 LINE L1 6148 6333 0 1063 280 29 53 chr1 259923242 259923832 -22269832 + L2 LINE L2 2738 3312 -1 215 222 206 0 chr1 259923866 259923929 -22269735 + MIR3 SINE MIR 112 187 -21 2088 103 0 0 chr1 259924307 259924628 -22269036 - AluSx SINE Alu 0 321 1 301 258 21 10 chr1 259925688 259925785 -22267879 - MIR3 SINE MIR -3 205 108 261 219 0 0 chr1 259926546 259926619 -22267045 + (TG)n Simple_repeat Simple_repeat 1 73 0 950 136 19 9 chr1 259927542 259927751 -22265913 + MLT1B LTR MaLR 5 314 -51 256 146 0 0 chr1 259927743 259927791 -22265873 - FLAM SINE Alu 0 133 86 * 889 192 53 34 chr1 259927791 259927999 -22265665 - AluJo SINE Alu -92 220 9 252 152 15 106 chr1 259928010 259928076 -22265588 + MLT1B LTR MaLR 300 359 -15 258 329 0 56 chr1 259928307 259928450 -22265214 + MIR SINE MIR 106 240 -22 2109 102 0 0 chr1 259928907 259929182 -22264482 + AluSx SINE Alu 1 275 -37 423 0 0 0 chr1 259929187 259929234 -22264430 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 241 325 112 24 chr1 259929572 259929741 -22263923 + L2 LINE L2 3130 3313 0 195 245 20 0 chr1 259930195 259930244 -22263420 - MER5A DNA MER1_type -72 117 68 338 268 181 0 chr1 259930626 259930764 -22262900 - MIR SINE MIR -15 247 85 1034 55 0 0 chr1 259931229 259931357 -22262307 + AluSc SINE Alu 1 128 -181 2160 126 0 0 chr1 259932895 259933204 -22260460 - AluSx SINE Alu -3 309 1 442 92 75 43 chr1 259933693 259933965 -22259699 + AluSg SINE Alu 1 310 0 259 210 32 0 chr1 259934501 259934563 -22259101 - L1MC4a LINE L1 -1861 5947 5884 317 319 9 35 chr1 259934927 259935043 -22258621 - HAL1b LINE L1 -7 1341 1229 1773 137 7 27 chr1 259935835 259936135 -22257529 - AluJb SINE Alu -18 294 1 200 296 0 0 chr1 259936668 259936722 -22256942 + L2 LINE L2 3208 3261 -11 201 303 124 11 chr1 259936823 259936912 -22256752 + MIR SINE MIR 7 105 -157 3061 199 109 9 chr1 259936914 259937406 -22256258 - L1MB8 LINE L1 -1 6177 5579 826 167 0 0 chr1 259937406 259937532 -22256132 - FLAM_A SINE Alu -7 126 1 3061 199 109 9 chr1 259937532 259937812 -22255852 - L1MB8 LINE L1 -599 5579 5328 232 281 178 27 chr1 259937812 259937958 -22255706 + MIR SINE MIR 92 259 -3 2200 113 0 0 chr1 259938334 259938636 -22255028 - AluSc SINE Alu -7 302 1 305 306 22 60 chr1 259938799 259938864 -22254800 + MIR SINE MIR 62 121 -141 2448 49 0 16 chr1 259938864 259939169 -22254495 - AluY SINE Alu -11 300 1 305 306 22 60 chr1 259939169 259939237 -22254427 + MIR SINE MIR 121 190 -72 437 289 104 17 chr1 259940492 259940684 -22252980 + MIR SINE MIR 9 214 -48 191 254 95 16 chr1 259942686 259942749 -22250915 - MIR SINE MIR -119 143 76 1757 110 64 11 chr1 259942763 259943044 -22250620 + AluSx SINE Alu 1 296 -16 220 231 138 0 chr1 259943046 259943111 -22250553 - MIR SINE MIR -10 252 179 26 64 0 0 chr1 259944111 259944158 -22249506 + GC_rich Low_complexity Low_complexity 1 47 0 2525 58 0 0 chr1 259944517 259944811 -22248853 - AluSq SINE Alu -19 294 1 2431 67 0 3 chr1 259945134 259945448 -22248216 - AluSp SINE Alu 0 313 1 341 243 203 10 chr1 259945454 259945754 -22247910 - L1ME4a LINE L1 -3 6118 5761 303 238 16 0 chr1 259945797 259945860 -22247804 - L2 LINE L2 -48 3265 3202 2336 107 13 0 chr1 259945875 259946183 -22247481 - AluSx SINE Alu 0 312 1 2382 105 0 3 chr1 259946933 259947239 -22246425 + AluSx SINE Alu 1 305 -7 23 54 0 0 chr1 259947426 259947463 -22246201 + AT_rich Low_complexity Low_complexity 1 37 0 315 265 17 26 chr1 259947463 259947580 -22246084 + L1M4 LINE L1 3111 3226 -2920 716 147 17 9 chr1 259947580 259947696 -22245968 - FLAM_C SINE Alu -25 118 2 1915 167 10 0 chr1 259948466 259948772 -22244892 + AluSx SINE Alu 1 309 -3 1469 184 20 93 chr1 259948890 259949233 -22244431 + AluYb8 SINE Alu 1 318 0 2220 43 0 0 chr1 259949237 259949517 -22244147 + L1PA5 LINE L1 5875 6154 0 2369 108 0 0 chr1 259949531 259949827 -22243837 - AluSx SINE Alu -16 296 1 2441 59 0 59 chr1 259949837 259950159 -22243505 - AluY SINE Alu -8 303 1 1471 190 24 38 chr1 259950292 259950611 -22243053 - AluJb SINE Alu 0 315 1 392 191 43 0 chr1 259950682 259950776 -22242888 - MLT1E2 LTR MaLR 0 626 529 1063 177 30 10 chr1 259950777 259951021 -22242643 + AluJo SINE Alu 75 322 0 2786 184 13 15 chr1 259951025 259951558 -22242106 - MLT1E2 LTR MaLR -94 532 1 2275 114 3 16 chr1 259951859 259952174 -22241490 - AluSx SINE Alu -1 311 1 6610 119 44 30 chr1 259952249 259952280 -22241384 - Tigger3b DNA MER2_type -1797 1231 1202 2181 129 0 3 chr1 259952280 259952582 -22241082 + AluSg SINE Alu 1 301 -9 6610 119 44 30 chr1 259952582 259953097 -22240567 - Tigger3b DNA MER2_type -1826 1202 695 2367 102 7 0 chr1 259953097 259953400 -22240264 - AluSx SINE Alu -7 305 1 6610 119 44 30 chr1 259953400 259953455 -22240209 - Tigger3b DNA MER2_type -2333 695 642 1980 141 3 28 chr1 259953455 259953775 -22239889 - AluSx SINE Alu 0 312 1 6610 119 44 30 chr1 259953775 259954169 -22239495 - Tigger3b DNA MER2_type -2386 642 213 2103 138 0 10 chr1 259954169 259954473 -22239191 - AluSx SINE Alu -11 301 1 6610 119 44 30 chr1 259954473 259954689 -22238975 - Tigger3b DNA MER2_type -2815 213 1 390 243 81 44 chr1 259954884 259955020 -22238644 + MIR SINE MIR 116 256 -6 1327 160 5 9 chr1 259955098 259955311 -22238353 + AluSx SINE Alu 1 212 -100 358 66 0 5 chr1 259955311 259955367 -22238297 + AluSq/x SINE Alu 78 125 -178 2327 88 3 13 chr1 259955368 259955676 -22237988 + AluSg SINE Alu 1 305 -5 1275 157 41 116 chr1 259955678 259955997 -22237667 + AluJb SINE Alu 1 295 -17 182 319 126 22 chr1 259956445 259956580 -22237084 - MIR3 SINE MIR -38 170 22 508 298 35 31 chr1 259957606 259957864 -22235800 - MIR SINE MIR 0 262 4 1593 94 5 0 chr1 259958086 259958288 -22235376 - AluSq SINE Alu -110 203 1 743 189 8 0 chr1 259958327 259958459 -22235205 - FLAM_C SINE Alu 0 133 1 2390 93 0 16 chr1 259958493 259958806 -22234858 - AluSg SINE Alu -2 308 1 197 259 60 60 chr1 259960094 259960210 -22233454 - MIR SINE MIR -113 149 34 216 0 0 0 chr1 259960917 259960941 -22232723 + (GGGA)n Simple_repeat Simple_repeat 3 26 0 799 283 4 22 chr1 259961749 259961975 -22231689 + MIR SINE MIR 41 262 0 2257 93 17 0 chr1 259962012 259962312 -22231352 - AluY SINE Alu -6 305 1 310 266 177 0 chr1 259962344 259962457 -22231207 - MIR SINE MIR 0 262 130 201 121 0 0 chr1 259962966 259962999 -22230665 + (TATATG)n Simple_repeat Simple_repeat 1 33 0 803 183 0 21 chr1 259963341 259963483 -22230181 + AluJo SINE Alu 1 139 -173 621 257 34 17 chr1 259963495 259963670 -22229994 - MIR SINE MIR -21 241 64 281 301 52 62 chr1 259964992 259965185 -22228479 - MIR3 SINE MIR -3 205 15 416 218 135 23 chr1 259966201 259966334 -22227330 + MER5A DNA MER1_type 39 186 -3 2303 125 0 0 chr1 259966645 259966950 -22226714 - AluSx SINE Alu -7 305 1 1998 163 0 3 chr1 259967919 259968232 -22225432 + AluJo SINE Alu 1 312 0 2377 98 0 3 chr1 259969302 259969607 -22224057 - AluSx SINE Alu -1 311 8 2207 93 3 50 chr1 259969615 259969936 -22223728 - AluSx SINE Alu -6 306 1 234 213 49 33 chr1 259969962 259970023 -22223641 - L2 LINE L2 -1 3271 3210 1456 139 0 46 chr1 259971117 259971355 -22222309 - AluJb SINE Alu -11 301 75 241 313 60 0 chr1 259971373 259971456 -22222208 - HAL1b LINE L1 -443 905 818 1973 97 73 21 chr1 259971790 259972107 -22221557 + AluSx SINE Alu 2 312 0 1289 140 25 15 chr1 259972155 259972355 -22221309 - AluJ SINE Alu 0 312 111 663 173 0 0 chr1 259972554 259972658 -22221006 - AluJ SINE Alu -207 105 2 257 346 28 16 chr1 259972734 259972916 -22220748 - L1MC4a LINE L1 -1832 5976 5793 362 150 38 75 chr1 259972937 259973017 -22220647 + AluJo SINE Alu 63 139 -163 527 294 92 21 chr1 259973017 259973255 -22220409 - L1MC4a LINE L1 -2056 5752 5498 2275 105 3 0 chr1 259973256 259973550 -22220114 - AluSg SINE Alu -15 295 1 1327 164 85 0 chr1 259973763 259974044 -22219620 - L1MC3 LINE L1 -1 7784 7480 2119 105 77 0 chr1 259974736 259975022 -22218642 - AluSg SINE Alu -2 308 1 1503 216 20 0 chr1 259975815 259976112 -22217552 - MLT1F1 LTR MaLR -14 553 251 2294 99 3 0 chr1 259976269 259976561 -22217103 + AluSx SINE Alu 1 293 -19 2113 121 7 14 chr1 259976566 259976856 -22216808 + AluJb SINE Alu 1 288 -24 675 228 19 0 chr1 259976867 259977025 -22216639 + MER96B DNA MER1_type? 256 416 -1 788 169 0 0 chr1 259977438 259977568 -22216096 + FLAM_C SINE Alu 3 132 -1 250 238 181 9 chr1 259977945 259978050 -22215614 - L2 LINE L2 -1 3271 3149 2255 105 0 3 chr1 259978428 259978735 -22214929 + AluSq SINE Alu 1 306 0 1416 99 0 0 chr1 259978736 259978917 -22214747 + AluSg/x SINE Alu 131 311 -1 394 355 112 0 chr1 259979088 259979302 -22214362 + MIR SINE MIR 15 252 -10 1860 146 51 3 chr1 259979332 259979626 -22214038 + AluJo SINE Alu 3 310 -2 2383 98 0 3 chr1 259979711 259980018 -22213646 + AluSg SINE Alu 1 306 -4 1485 143 5 0 chr1 259980077 259980293 -22213371 + AluJb SINE Alu 83 299 -13 1503 125 161 0 chr1 259980425 259980673 -22212991 + AluSx SINE Alu 1 288 -14 317 291 127 16 chr1 259980773 259981144 -22212520 + L1ME4a LINE L1 5709 6120 -1 185 327 113 40 chr1 259981171 259981321 -22212343 + MIR SINE MIR 24 184 -78 2264 102 0 0 chr1 259981437 259981813 -22211851 - AluSg SINE Alu 0 376 1 264 254 28 0 chr1 259982316 259982387 -22211277 - MIR SINE MIR -72 136 64 28 0 0 0 chr1 259982484 259982512 -22211152 + AT_rich Low_complexity Low_complexity 1 28 0 1836 125 26 51 chr1 259982513 259982854 -22210810 + AluSx SINE Alu 1 312 0 691 215 24 64 chr1 259982997 259983164 -22210500 + L1ME3A LINE L1 5127 5267 -903 2142 107 47 10 chr1 259983164 259983464 -22210200 + AluSx SINE Alu 1 311 -1 691 215 24 64 chr1 259983464 259983624 -22210040 + L1ME3A LINE L1 5267 5432 -738 679 149 44 0 chr1 259983631 259983745 -22209919 + FLAM_C SINE Alu 1 119 -14 210 37 0 0 chr1 259983775 259983802 -22209862 + (TA)n Simple_repeat Simple_repeat 1 27 0 1059 131 0 4 chr1 259984135 259984397 -22209267 + (TA)n Simple_repeat Simple_repeat 1 260 0 284 221 143 0 chr1 259984416 259984493 -22209171 + L1ME3A LINE L1 5584 5671 -499 1253 214 142 98 chr1 259984493 259984527 -22209137 + MLT2B3 LTR ERVL 1 32 -522 2290 98 3 10 chr1 259984527 259984824 -22208840 + AluSx SINE Alu 1 295 -17 1253 214 142 98 chr1 259984824 259985302 -22208362 + MLT2B3 LTR ERVL 32 536 -18 251 200 36 0 chr1 259985353 259985408 -22208256 + MER66B LTR ERV1 292 348 -138 387 0 0 0 chr1 259985427 259985470 -22208194 + (GA)n Simple_repeat Simple_repeat 2 44 0 3904 199 17 63 chr1 259985481 259986497 -22207167 + LTR5 LTR ERVK 1 969 0 487 252 106 13 chr1 259986497 259986678 -22206986 + L1ME3A LINE L1 5697 5881 -285 655 133 106 53 chr1 259986705 259986893 -22206771 + L1ME3A LINE L1 5962 6159 -11 2184 115 0 16 chr1 259987004 259987308 -22206356 + AluSx SINE Alu 1 299 -13 2447 87 10 0 chr1 259987604 259987913 -22205751 - AluSx SINE Alu 0 312 1 1759 153 10 61 chr1 259988135 259988448 -22205216 - AluJb SINE Alu -13 299 3 324 313 0 0 chr1 259988883 259988966 -22204698 - L2 LINE L2 -537 2777 2695 2089 90 4 11 chr1 259988971 259989239 -22204425 + AluSx SINE Alu 1 266 -46 7213 114 124 82 chr1 259989240 259990855 -22202809 + pTR5 LTR ERV1 757 2438 0 468 75 0 1 chr1 259990893 259990972 -22202692 + L1MB3 LINE L1 5753 5831 -350 1134 75 0 0 chr1 259990973 259991106 -22202558 + AluSg SINE Alu 2 134 -176 2223 98 11 0 chr1 259991106 259991392 -22202272 + AluSg SINE Alu 1 289 -21 2018 151 0 7 chr1 259991442 259991740 -22201924 + AluJo SINE Alu 1 296 -16 205 292 56 14 chr1 259991975 259992047 -22201617 - MIR SINE MIR -86 176 102 606 244 10 17 chr1 259992463 259992666 -22200998 + MIR SINE MIR 11 212 -50 220 254 0 34 chr1 259993070 259993129 -22200535 + L2 LINE L2 3215 3271 -1 307 281 55 49 chr1 259993177 259993208 -22200456 - L1ME4a LINE L1 0 6121 6092 2399 90 0 20 chr1 259993208 259993508 -22200156 + AluSx SINE Alu 1 294 -18 307 281 55 49 chr1 259993508 259993640 -22200024 - L1ME4a LINE L1 -29 6092 5957 602 161 0 0 chr1 259993943 259994036 -22199628 - FLAM_C SINE Alu -16 127 35 213 0 0 35 chr1 259994730 259994759 -22198905 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 326 119 0 34 chr1 259994759 259994809 -22198855 - AluS SINE Alu -7 294 233 2150 120 0 0 chr1 260044830 260045142 -22148522 - AluSx SINE Alu 0 312 1 2478 67 0 10 chr1 260045367 260045680 -22147984 + AluY SINE Alu 2 311 0 2429 70 0 7 chr1 260046088 260046389 -22147275 - AluSc SINE Alu -8 301 3 302 255 248 13 chr1 260046529 260046678 -22146986 - L2 LINE L2 -4 3309 3126 225 0 0 0 chr1 260046679 260046704 -22146960 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2281 96 0 0 chr1 260046711 260047003 -22146661 + AluSg SINE Alu 1 292 -18 1649 120 19 31 chr1 260047020 260047278 -22146386 + AluSx SINE Alu 40 294 -18 350 283 114 4 chr1 260047313 260047606 -22146058 - L2 LINE L2 -278 3035 2713 576 196 5 18 chr1 260047749 260047938 -22145726 + AluJ SINE Alu 74 295 -17 1041 169 111 4 chr1 260048529 260048763 -22144901 + MER33 DNA MER1_type 1 249 -75 1209 109 0 85 chr1 260048764 260048862 -22144802 - AluJo SINE Alu 0 312 240 2309 109 0 7 chr1 260048862 260049165 -22144499 + AluSx SINE Alu 1 301 -11 1209 109 0 85 chr1 260049165 260049277 -22144387 - AluJo SINE Alu -72 240 120 303 161 0 18 chr1 260049287 260049343 -22144321 + MER33 DNA MER1_type 309 363 0 496 290 65 30 chr1 260049357 260049588 -22144076 - MIR SINE MIR -3 259 21 2327 92 0 3 chr1 260050658 260050961 -22142703 + AluY SINE Alu 2 303 -8 766 269 111 0 chr1 260051114 260051330 -22142334 + LTR16B LTR ERVL 1 240 -224 785 259 219 34 chr1 260051335 260051702 -22141962 + L1MDa LINE L1 1423 1721 -4857 2093 138 0 7 chr1 260051702 260052000 -22141664 - AluSx SINE Alu -15 297 2 785 259 219 34 chr1 260052000 260052030 -22141634 + L1MDa LINE L1 1721 1744 -4834 2065 117 47 0 chr1 260052030 260052329 -22141335 + AluSp SINE Alu 1 313 0 785 259 219 34 chr1 260052329 260052775 -22140889 + L1MDa LINE L1 1744 2461 -4117 889 214 109 0 chr1 260052810 260053086 -22140578 + L1MDa LINE L1 2526 2831 -3709 605 199 57 11 chr1 260053103 260053279 -22140385 + L1MDa LINE L1 2882 3065 -3475 457 162 152 20 chr1 260053292 260053391 -22140273 - FLAM_C SINE Alu -15 128 17 235 114 29 0 chr1 260053409 260053444 -22140220 - Alu SINE Alu -266 36 1 2184 236 80 40 chr1 260053445 260053705 -22139959 + L1MDa LINE L1 3070 3318 -3222 2412 102 0 0 chr1 260053705 260054009 -22139655 + AluSq SINE Alu 1 304 -9 2184 236 80 40 chr1 260054009 260054269 -22139395 + L1MDa LINE L1 3318 3566 -2974 2346 86 7 0 chr1 260054269 260054572 -22139092 + AluY SINE Alu 1 305 -6 2184 236 80 40 chr1 260054572 260054880 -22138784 + L1MDa LINE L1 3566 3932 -2608 1783 117 38 62 chr1 260055807 260056097 -22137567 + AluSx SINE Alu 21 303 -9 2149 110 0 32 chr1 260056783 260057093 -22136571 - AluSx SINE Alu -12 300 1 533 219 119 0 chr1 260057262 260057422 -22136242 - MER104 DNA MER2_type -1 179 1 2198 125 0 0 chr1 260058189 260058486 -22135178 + AluSg SINE Alu 1 297 -13 2206 100 10 0 chr1 260058757 260059068 -22134596 + AluSg SINE Alu 1 314 0 2313 121 0 0 chr1 260059089 260059394 -22134270 + AluSx SINE Alu 3 307 -5 1856 154 10 10 chr1 260059534 260059845 -22133819 + AluJb SINE Alu 1 311 -1 1846 216 46 37 chr1 260059852 260060306 -22133358 + L1ME1 LINE L1 5704 6161 -5 1678 105 101 27 chr1 260061678 260061936 -22131728 + AluSg SINE Alu 14 290 -20 2473 70 0 3 chr1 260063070 260063369 -22130295 + AluY SINE Alu 1 298 -13 1558 189 7 21 chr1 260063523 260063809 -22129855 - AluJo SINE Alu -30 282 1 2239 101 10 0 chr1 260063819 260064116 -22129548 - AluSx SINE Alu -12 300 1 1471 156 0 0 chr1 260064587 260064805 -22128859 + AluJb SINE Alu 86 303 -9 424 302 160 4 chr1 260065751 260065976 -22127688 - L2 LINE L2 -2026 1288 1029 204 246 88 0 chr1 260065988 260066045 -22127619 + MIR SINE MIR 151 212 -50 2566 162 112 72 chr1 260066349 260066992 -22126672 - LTR65 LTR ERV1 0 669 1 2077 118 3 7 chr1 260067183 260067471 -22126193 - AluSx SINE Alu -25 287 1 2054 97 14 4 chr1 260067589 260067867 -22125797 + AluSq SINE Alu 1 281 -32 26 30 0 0 chr1 260070260 260070293 -22123371 + AT_rich Low_complexity Low_complexity 1 33 0 2363 76 3 0 chr1 260070306 260070595 -22123069 + AluSg SINE Alu 1 290 -20 25 0 0 0 chr1 260070838 260070863 -22122801 + AT_rich Low_complexity Low_complexity 1 25 0 1844 136 51 3 chr1 260070982 260071276 -22122388 - AluJo SINE Alu -3 309 2 21 36 0 0 chr1 260073044 260073072 -22120592 + AT_rich Low_complexity Low_complexity 1 28 0 1799 192 67 91 chr1 260073307 260073832 -22119832 - MLT2B1 LTR ERVL -8 512 1 2182 99 21 0 chr1 260073870 260074153 -22119511 + AluSx SINE Alu 1 289 -23 2074 131 3 0 chr1 260074407 260074717 -22118947 - AluSx SINE Alu 0 311 1 2266 97 10 0 chr1 260074776 260075066 -22118598 + AluSq SINE Alu 1 293 -20 2207 114 0 0 chr1 260075067 260075382 -22118282 + AluSc SINE Alu 2 309 0 540 176 0 0 chr1 260075391 260075476 -22118188 + FLAM_A SINE Alu 41 125 -17 23 0 0 0 chr1 260075476 260075499 -22118165 + AT_rich Low_complexity Low_complexity 1 23 0 1880 150 40 0 chr1 260075628 260075928 -22117736 + AluSx SINE Alu 1 312 0 953 160 10 80 chr1 260075929 260076129 -22117535 - AluJo SINE Alu -30 282 97 606 151 104 0 chr1 260076142 260076248 -22117416 - AluJb SINE Alu -186 126 10 1924 167 0 0 chr1 260076372 260076677 -22116987 + AluJb SINE Alu 1 305 0 2267 98 0 0 chr1 260076823 260077110 -22116554 - AluSx SINE Alu -17 295 9 259 159 0 0 chr1 260077118 260077162 -22116502 + AluSg/x SINE Alu 121 164 -136 1615 154 0 4 chr1 260077163 260077474 -22116190 + AluJb SINE Alu 68 377 0 2515 74 7 0 chr1 260077663 260077973 -22115691 + AluSq SINE Alu 1 312 -1 2159 132 0 3 chr1 260078126 260078437 -22115227 - AluSx SINE Alu -2 310 1 1541 184 20 59 chr1 260078961 260079004 -22114660 - MLT1A2 LTR MaLR 0 374 331 2282 100 7 0 chr1 260079004 260079313 -22114351 + AluSx SINE Alu 1 311 -1 1541 184 20 59 chr1 260079313 260079627 -22114037 - MLT1A2 LTR MaLR -43 331 31 940 141 54 13 chr1 260079628 260079777 -22113887 + FRAM SINE Alu 1 154 -22 437 241 138 0 chr1 260079821 260079937 -22113727 - MER103 DNA DNA -34 132 1 2297 107 7 0 chr1 260080104 260080412 -22113252 - AluSx SINE Alu -2 310 1 250 326 114 38 chr1 260081043 260081279 -22112385 - L2 LINE L2 -375 2939 2686 413 156 0 0 chr1 260081280 260081344 -22112320 + AluS SINE Alu 1 64 -245 2042 118 38 0 chr1 260081345 260081633 -22112031 + AluSq SINE Alu 13 311 -2 385 273 20 0 chr1 260081694 260081793 -22111871 - MIR SINE MIR -115 147 47 2427 55 31 3 chr1 260081971 260082263 -22111401 + AluY SINE Alu 1 300 -11 1612 198 7 3 chr1 260082984 260083267 -22110397 + AluJo SINE Alu 1 284 -28 239 306 219 3 chr1 260083432 260083779 -22109885 + L2 LINE L2 2308 2729 -585 2126 110 11 0 chr1 260083779 260084061 -22109603 + AluSq SINE Alu 1 285 -28 187 222 0 0 chr1 260084069 260084105 -22109559 + L2 LINE L2 2716 2751 -563 2075 112 10 19 chr1 260084456 260084769 -22108895 - AluSq SINE Alu -3 310 1 220 284 0 15 chr1 260084783 260084850 -22108814 + L2 LINE L2 3244 3309 -4 1272 152 0 74 chr1 260085142 260085197 -22108467 + AluJb SINE Alu 87 144 -168 2273 96 3 3 chr1 260085197 260085489 -22108175 + AluSg SINE Alu 1 292 -18 1272 152 0 74 chr1 260085489 260085663 -22108001 + AluJb SINE Alu 144 299 -13 959 195 0 0 chr1 260085688 260085857 -22107807 - AluSg/x SINE Alu -7 303 135 255 283 33 17 chr1 260085986 260086106 -22107558 - L1M4 LINE L1 -983 5163 5042 1174 153 0 0 chr1 260086110 260086287 -22107377 - AluSp SINE Alu 0 313 137 259 315 11 0 chr1 260086340 260086429 -22107235 - L1M4 LINE L1 -1329 4817 4728 467 281 0 0 chr1 260086483 260086604 -22107060 + L1ME3A LINE L1 5711 5831 -333 304 231 0 0 chr1 260086638 260086703 -22106961 + L1ME3A LINE L1 5815 5879 -291 813 162 87 23 chr1 260087418 260087591 -22106073 - MER5A DNA MER1_type 0 189 6 196 194 0 0 chr1 260087677 260087713 -22105951 + MIR3 SINE MIR 146 181 -27 1049 118 0 0 chr1 260088091 260088227 -22105437 + AluSq/x SINE Alu 2 137 -175 2309 87 0 3 chr1 260088227 260088515 -22105149 + AluSx SINE Alu 1 287 -25 458 153 36 0 chr1 260088516 260088627 -22105037 + (TA)n Simple_repeat Simple_repeat 1 115 0 2518 79 0 13 chr1 260088893 260089210 -22104454 + AluSp SINE Alu 1 313 0 2249 117 0 10 chr1 260090069 260090376 -22103288 - AluSx SINE Alu -8 304 1 2423 97 0 0 chr1 260090750 260091049 -22102615 + AluSp SINE Alu 1 299 -14 1296 146 38 14 chr1 260091399 260091611 -22102053 + AluJb SINE Alu 85 301 -11 24 0 0 0 chr1 260091616 260091640 -22102024 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr1 260091754 260091786 -22101878 + (TG)n Simple_repeat Simple_repeat 1 32 0 722 178 159 6 chr1 260092131 260092294 -22101370 + MER5A DNA MER1_type 2 189 0 875 177 0 0 chr1 260092424 260092565 -22101099 + AluJo SINE Alu 1 141 -171 23 0 0 0 chr1 260092601 260092624 -22101040 + AT_rich Low_complexity Low_complexity 1 23 0 284 151 116 23 chr1 260092631 260092717 -22100947 - L1MC5 LINE L1 -36 7925 7832 297 188 0 0 chr1 260092780 260092832 -22100832 + Alu SINE Alu 3 47 -252 34 0 0 0 chr1 260092856 260092890 -22100774 + AT_rich Low_complexity Low_complexity 1 34 0 230 270 15 22 chr1 260092893 260093030 -22100634 - L1MC5 LINE L1 -216 7745 7610 2300 111 3 0 chr1 260093177 260093484 -22100180 + AluSx SINE Alu 1 308 -4 1965 102 78 7 chr1 260093809 260094093 -22099571 + AluSx SINE Alu 1 304 -8 2463 54 3 3 chr1 260094455 260094751 -22098913 + AluY SINE Alu 1 296 -15 2329 104 0 3 chr1 260094930 260095237 -22098427 - AluSx SINE Alu -6 306 1 24 0 0 0 chr1 260095237 260095261 -22098403 + AT_rich Low_complexity Low_complexity 1 24 0 1604 125 57 39 chr1 260095385 260095580 -22098084 - AluSx SINE Alu 0 315 111 2571 61 0 3 chr1 260095580 260095890 -22097774 - AluY SINE Alu 0 311 3 1604 125 57 39 chr1 260095890 260096004 -22097660 - AluSx SINE Alu -204 111 1 1357 153 77 5 chr1 260096011 260096233 -22097431 - AluJb SINE Alu -20 292 55 1910 106 0 0 chr1 260096234 260096480 -22097184 + AluSx SINE Alu 60 305 -7 1441 128 10 0 chr1 260296525 260296729 -21896935 + AluSq SINE Alu 92 297 -16 710 98 0 8 chr1 260296732 260296855 -21896809 + (GGAA)n Simple_repeat Simple_repeat 4 125 0 944 192 62 10 chr1 260296860 260297053 -21896611 + MLT1D LTR MaLR 303 505 0 382 123 0 0 chr1 260297055 260297112 -21896552 + MLT1D-int LTR MaLR 3 59 -1312 615 167 46 9 chr1 260297140 260297248 -21896416 + FLAM_A SINE Alu 18 129 -13 4547 205 34 93 chr1 260297248 260297711 -21895953 + MLT1D-int LTR MaLR 51 540 -831 2190 111 0 29 chr1 260297711 260298026 -21895638 + AluY SINE Alu 1 306 -5 4547 205 34 93 chr1 260298026 260298937 -21894727 + MLT1D-int LTR MaLR 540 1344 -27 272 156 0 0 chr1 260298963 260299008 -21894656 + MER4A LTR ERV1 54 98 -566 1788 112 5 75 chr1 260299008 260299379 -21894285 + MER4A LTR ERV1 261 664 0 3022 85 127 59 chr1 260299405 260299979 -21893685 + MER4A-int LTR ERV1 6 618 -5980 225 152 0 43 chr1 260300096 260300142 -21893522 + LTR49 LTR ERV1 273 316 -279 1383 67 65 112 chr1 260300163 260300264 -21893400 + MER41A-int LTR ERV1 504 608 -4407 2538 68 7 0 chr1 260300264 260300572 -21893092 + AluSp SINE Alu 1 310 -3 1383 67 65 112 chr1 260300572 260300822 -21892842 + MER41A-int LTR ERV1 608 749 -4266 * 4010 75 74 27 chr1 260300820 260301513 -21892151 + MER41A-int LTR ERV1 1771 2495 -4103 1142 148 131 9 chr1 260301513 260301742 -21891922 - LTR8 LTR ERV1 -434 257 1 16717 93 53 32 chr1 260301742 260301884 -21891780 + MER41A-int LTR ERV1 1875 2013 -4585 2322 56 0 18 chr1 260301884 260302198 -21891466 - AluY SINE Alu 0 309 1 16717 93 53 32 chr1 260302198 260302506 -21891158 + MER41A-int LTR ERV1 2013 2313 -4285 4171 71 36 0 chr1 260302506 260303040 -21890624 + MER41A LTR ERV1 1 553 -1 16717 93 53 32 chr1 260303040 260303562 -21890102 + MER41A-int LTR ERV1 2313 2823 -3775 2397 86 0 13 chr1 260303562 260303866 -21889798 - AluSx SINE Alu -5 307 8 16717 93 53 32 chr1 260303866 260304800 -21888864 + MER41A-int LTR ERV1 2823 3736 -2862 8462 58 2 4 chr1 260304800 260306637 -21887027 + L1PA6 LINE L1 4317 6151 -3 16717 93 53 32 chr1 260306637 260307880 -21885784 + MER41A-int LTR ERV1 3736 6598 0 239 111 22 22 chr1 260307908 260307953 -21885711 + MER4A LTR ERV1 54 98 -566 729 135 8 121 chr1 260307953 260308190 -21885474 + MER4A LTR ERV1 261 529 -135 331 316 94 17 chr1 260308371 260308605 -21885059 + L1ME4a LINE L1 5347 5598 -523 2317 214 122 33 chr1 260308608 260309357 -21884307 + MER21B LTR ERV1 1 815 -48 404 293 66 44 chr1 260309453 260309527 -21884137 + L1ME4a LINE L1 5728 5799 -322 2227 118 0 3 chr1 260309527 260309832 -21883832 - AluY SINE Alu -7 304 1 404 293 66 44 chr1 260309832 260309938 -21883726 + L1ME4a LINE L1 5799 5912 -209 269 230 135 0 chr1 260309945 260310019 -21883645 + L1ME4a LINE L1 5969 6052 -69 1878 114 19 4 chr1 260310040 260310311 -21883353 - AluSg SINE Alu -2 308 34 2432 91 3 3 chr1 260310401 260310709 -21882955 - AluSg SINE Alu -2 308 1 6102 175 58 35 chr1 260311229 260311508 -21882156 + Charlie1a DNA MER1_type 2 273 -2488 2573 18 0 0 chr1 260311508 260311817 -21881847 - AluYb8 SINE Alu 0 323 15 6102 175 58 35 chr1 260311817 260312694 -21880970 + Charlie1a DNA MER1_type 273 1128 -1633 2079 140 0 7 chr1 260312694 260312994 -21880670 - AluSx SINE Alu -14 298 1 1946 201 44 34 chr1 260312995 260313493 -21880171 - MLT1D LTR MaLR 0 505 3 6102 175 58 35 chr1 260313493 260313642 -21880022 + Charlie1a DNA MER1_type 1128 1272 -1489 1514 171 173 42 chr1 260313642 260314046 -21879618 - MSTB2 LTR MaLR 0 457 1 6102 175 58 35 chr1 260314046 260314156 -21879508 + Charlie1a DNA MER1_type 1272 1455 0 810 169 0 15 chr1 260314615 260314745 -21878919 - FLAM_A SINE Alu -5 128 1 512 317 96 10 chr1 260314885 260315124 -21878540 - MIR SINE MIR -4 258 3 707 272 111 8 chr1 260315736 260315997 -21877667 - MLT1J LTR MaLR -14 497 210 2030 218 47 110 chr1 260316163 260316279 -21877385 + L1M4 LINE L1 330 452 -6090 2000 119 0 75 chr1 260316279 260316598 -21877066 - AluSq SINE Alu -18 295 1 2030 218 47 110 chr1 260316598 260317379 -21876285 + L1M4 LINE L1 452 1170 -5372 399 180 173 50 chr1 260317379 260317518 -21876146 + MER21B LTR ERV1 182 337 -526 * 477 209 85 0 chr1 260317507 260317636 -21876028 + MER21B LTR ERV1 670 809 -54 795 229 98 37 chr1 260317640 260317792 -21875872 - L1 LINE L1 -2509 3637 3496 1952 87 21 93 chr1 260317792 260318125 -21875539 - AluYb8 SINE Alu -9 309 1 795 229 98 37 chr1 260318125 260318378 -21875286 - L1 LINE L1 -2650 3496 3207 * 930 179 18 106 chr1 260318375 260318705 -21874959 - L1M4 LINE L1 -5186 1356 1056 2218 115 0 3 chr1 260318738 260319042 -21874622 + AluSg SINE Alu 1 303 -7 346 115 0 0 chr1 260319082 260319134 -21874530 - L1M4 LINE L1 -5488 1054 1003 944 169 22 11 chr1 260319174 260319352 -21874312 - MER21B LTR ERV1 -683 180 1 1936 144 0 23 chr1 260319489 260319794 -21873870 + AluSx SINE Alu 5 302 -10 210 351 27 27 chr1 260319796 260319907 -21873757 + L3 LINE CR1 1464 1574 -3 4403 156 32 33 chr1 260320054 260320818 -21872846 + L1MB5 LINE L1 4833 5598 -576 2072 129 10 3 chr1 260320818 260321113 -21872551 + AluSx SINE Alu 1 297 -15 4403 156 32 33 chr1 260321113 260321690 -21871974 + L1MB5 LINE L1 5598 6174 0 28 61 0 0 chr1 260322189 260322238 -21871426 + GC_rich Low_complexity Low_complexity 1 49 0 577 203 49 31 chr1 260322932 260323095 -21870569 - MIR3 SINE MIR -21 187 22 327 255 131 28 chr1 260323984 260324129 -21869535 - MIR SINE MIR -85 177 18 2488 71 3 0 chr1 260324528 260324823 -21868841 + AluSp SINE Alu 1 296 -17 2183 120 0 0 chr1 260325057 260325348 -21868316 - AluSq SINE Alu -22 291 1 244 247 197 11 chr1 260325348 260325526 -21868138 - L1ME4a LINE L1 -108 6013 5803 410 260 62 88 chr1 260325898 260326090 -21867574 + MIR3 SINE MIR 10 196 -12 331 281 145 66 chr1 260326293 260326521 -21867143 - MIR SINE MIR -4 258 13 291 281 117 8 chr1 260328153 260328281 -21865383 - L1ME4a LINE L1 -28 6093 5952 338 229 313 8 chr1 260328912 260329043 -21864621 + MIR SINE MIR 2 172 -90 2001 117 0 0 chr1 260329699 260329965 -21863699 - AluSx SINE Alu 0 312 47 867 139 0 36 chr1 260330671 260330808 -21862856 - FLAM_C SINE Alu -1 132 1 1741 190 3 10 chr1 260331723 260332028 -21861636 + AluJo SINE Alu 1 303 -9 378 303 50 0 chr1 260333157 260333256 -21860408 + L2 LINE L2 3169 3272 0 288 326 87 11 chr1 260334288 260334472 -21859192 - L3b LINE CR1 -168 1415 1218 629 239 129 24 chr1 260335679 260335888 -21857776 + MIR SINE MIR 13 243 -19 489 297 29 0 chr1 260335916 260336054 -21857610 + MIR3 SINE MIR 45 186 -22 1988 146 7 23 chr1 260336284 260336592 -21857072 + AluJo SINE Alu 1 303 -9 1813 170 16 19 chr1 260337512 260337823 -21855841 - AluJb SINE Alu -2 310 1 809 169 23 0 chr1 260338476 260338606 -21855058 + FLAM_A SINE Alu 1 133 0 515 245 153 60 chr1 260339244 260339460 -21854204 + L2 LINE L2 3053 3288 -25 2390 97 0 0 chr1 260340932 260341230 -21852434 - AluSg SINE Alu -12 298 1 184 292 0 0 chr1 260341392 260341440 -21852224 - MIR SINE MIR -108 154 107 415 266 9 9 chr1 260342268 260342381 -21851283 - L2 LINE L2 -3 3310 3198 183 234 65 112 chr1 260342643 260342750 -21850914 - L2 LINE L2 -50 3263 3162 773 196 124 72 chr1 260344382 260344579 -21849085 - MER21B LTR ERV1 -171 692 478 1825 166 7 0 chr1 260344579 260344886 -21848778 - AluJb SINE Alu -3 309 1 773 196 124 72 chr1 260344886 260344938 -21848726 - MER21B LTR ERV1 -385 478 430 1391 175 4 0 chr1 260348237 260348471 -21845193 + AluJb SINE Alu 3 237 -75 205 298 70 51 chr1 260348776 260348934 -21844730 - L2 LINE L2 -1287 2027 1867 2037 123 7 0 chr1 260349610 260349910 -21843754 - AluSq SINE Alu -11 302 1 236 250 111 0 chr1 260349916 260350024 -21843640 - L1MC/D LINE L1 -1992 5816 5697 2206 76 0 3 chr1 260350281 260350569 -21843095 - AluY SINE Alu -24 287 1 427 270 138 49 chr1 260350577 260351085 -21842579 - L1MC/D LINE L1 -787 5359 4807 966 251 58 8 chr1 260351422 260351665 -21841999 - MLT1J LTR MaLR -185 326 72 237 345 28 21 chr1 260351700 260351845 -21841819 - L2 LINE L2 -2605 709 564 276 116 93 0 chr1 260352385 260352428 -21841236 + MLT1J LTR MaLR 141 187 -324 621 259 90 19 chr1 260352511 260352723 -21840941 - MIR SINE MIR -21 241 15 2221 85 7 0 chr1 260352815 260353110 -21840554 + AluSq SINE Alu 7 303 -10 709 154 9 0 chr1 260353119 260353229 -21840435 + AluJo SINE Alu 24 134 -178 623 163 41 27 chr1 260353231 260353378 -21840286 - L1ME LINE L1 -686 5478 5330 2021 148 21 6 chr1 260353703 260354035 -21839629 - MER1B DNA MER1_type 0 337 1 388 132 231 0 chr1 260354620 260354711 -21838953 + L1MC4 LINE L1 7929 8040 -2 2373 171 103 43 chr1 260354879 260355462 -21838202 + MER92B LTR ERV1 1 618 -18 1629 151 47 4 chr1 260355476 260355754 -21837910 - AluJo SINE Alu -22 290 1 262 244 153 74 chr1 260355998 260356295 -21837369 + MLT1K LTR MaLR 45 499 -89 2039 110 3 3 chr1 260356295 260356607 -21837057 - AluSx SINE Alu 0 312 1 262 244 153 74 chr1 260356607 260356698 -21836966 + MLT1K LTR MaLR 499 581 -7 2321 85 0 0 chr1 260356869 260357164 -21836500 + AluSq SINE Alu 2 296 -17 612 269 110 48 chr1 260358052 260358599 -21835065 - HAL1 LINE L1 -1118 1389 809 225 179 89 0 chr1 260358760 260358816 -21834848 + LTR16C LTR ERVL 431 491 0 1957 122 0 30 chr1 260358889 260359030 -21834634 + AluSx SINE Alu 1 145 -167 1875 124 32 0 chr1 260359030 260359312 -21834352 + AluSc SINE Alu 1 291 -18 1957 122 0 30 chr1 260359312 260359474 -21834190 + AluSx SINE Alu 145 295 -17 213 121 0 0 chr1 260359488 260359521 -21834143 + (TG)n Simple_repeat Simple_repeat 1 33 0 238 306 135 9 chr1 260359582 260359693 -21833971 + MIR3 SINE MIR 30 154 -54 748 268 177 24 chr1 260360456 260360829 -21832835 - MLT1L LTR MaLR -71 544 115 1645 183 0 17 chr1 260361173 260361473 -21832191 - AluJb SINE Alu -17 295 1 4539 119 64 24 chr1 260361482 260362277 -21831387 - L1MB2 LINE L1 -2 6169 5343 729 173 0 0 chr1 260362277 260362387 -21831277 - AluSg/x SINE Alu -68 242 133 2086 108 27 0 chr1 260362719 260363016 -21830648 + AluSx SINE Alu 1 305 -7 1635 154 67 82 chr1 260363305 260363468 -21830196 + Charlie1b DNA MER1_type 56 220 -2541 2127 123 3 0 chr1 260363468 260363778 -21829886 - AluSx SINE Alu -1 311 1 1560 97 0 9 chr1 260363779 260363996 -21829668 - AluSq SINE Alu -98 215 1 1635 154 67 82 chr1 260363996 260364305 -21829359 + Charlie1b DNA MER1_type 219 523 0 784 256 57 16 chr1 260365296 260365542 -21828122 + MIR SINE MIR 3 258 -4 408 242 0 0 chr1 260365700 260365791 -21827873 - MER103 DNA DNA -74 92 2 737 258 88 5 chr1 260365871 260366088 -21827576 - MIR SINE MIR 0 262 28 310 195 138 23 chr1 260366116 260366203 -21827461 - L3 LINE CR1 -158 1419 1323 1342 143 8 64 chr1 260366469 260366735 -21826929 + AluJo SINE Alu 42 292 -20 684 285 196 52 chr1 260367177 260367511 -21826153 - L3 LINE CR1 -514 1063 779 971 180 35 5 chr1 260367511 260367711 -21825953 + MER3 DNA MER1_type 1 206 -3 684 285 196 52 chr1 260367711 260367958 -21825706 - L3 LINE CR1 -798 779 398 456 248 94 7 chr1 260367996 260368145 -21825519 - L1ME4a LINE L1 0 6121 5960 30 0 0 0 chr1 260368192 260368222 -21825442 + AT_rich Low_complexity Low_complexity 1 30 0 882 140 140 0 chr1 260368222 260368401 -21825263 - L1MA8 LINE L1 -7 6284 6081 3385 122 29 11 chr1 260368402 260369005 -21824659 + MER4B LTR ERV1 3 779 0 740 206 14 0 chr1 260369006 260369152 -21824512 - L1MA8 LINE L1 -208 6083 5936 823 114 8 0 chr1 260369157 260369289 -21824375 - AluSp/q SINE Alu -5 308 176 2432 106 6 14 chr1 260369294 260369653 -21824011 - L1MA8 LINE L1 -342 5949 5594 33 73 0 0 chr1 260369655 260369723 -21823941 + AT_rich Low_complexity Low_complexity 1 68 0 370 246 9 18 chr1 260369747 260369861 -21823803 - L1ME4a LINE L1 -328 5793 5681 291 343 106 49 chr1 260369944 260370209 -21823455 - L3 LINE CR1 -1238 339 60 674 222 173 21 chr1 260370365 260370608 -21823056 + MLT1J1 LTR MaLR 1 280 -166 21 71 0 0 chr1 260372793 260372835 -21820829 + AT_rich Low_complexity Low_complexity 1 42 0 2703 92 14 0 chr1 260373547 260373904 -21819760 + THE1B LTR MaLR 1 362 -2 3232 86 155 6 chr1 260373906 260374404 -21819260 + THE1B-int LTR MaLR 1 572 -1008 2183 93 103 0 chr1 260374404 260374715 -21818949 + THE1B LTR MaLR 20 362 -2 1620 164 48 7 chr1 260375732 260376025 -21817639 - AluSq SINE Alu -6 307 3 2183 98 0 0 chr1 260376548 260376833 -21816831 - AluSg SINE Alu -25 285 1 10982 43 4 2 chr1 260377143 260378494 -21815170 - L1PA5 LINE L1 -3444 2702 1350 22324 30 7 0 chr1 260378494 260381912 -21811752 + L1PA5 LINE L1 2717 6154 0 1678 131 24 44 chr1 260381927 260382224 -21811440 - AluSx SINE Alu -21 291 1 809 180 16 48 chr1 260382316 260382505 -21811159 + L1ME2 LINE L1 5975 6157 -7 2218 87 3 7 chr1 260383062 260383362 -21810302 - AluY SINE Alu -12 299 1 823 230 151 34 chr1 260383384 260383767 -21809897 + L1MC4a LINE L1 5687 6114 -1694 2414 68 0 13 chr1 260383849 260384160 -21809504 - AluY SINE Alu -4 307 1 1489 170 37 27 chr1 260384285 260384579 -21809085 + AluJb SINE Alu 1 297 -15 1908 125 3 30 chr1 260384629 260384932 -21808732 - AluSq SINE Alu -18 295 1 2082 117 0 10 chr1 260385109 260385417 -21808247 - AluSx SINE Alu -7 305 1 2823 200 36 25 chr1 260385754 260386655 -21807009 + L1M4 LINE L1 1192 2103 -4543 749 196 40 17 chr1 260386680 260386853 -21806811 + L1M4 LINE L1 2287 2463 -4183 855 193 240 23 chr1 260386854 260387154 -21806510 - L2 LINE L2 -1321 1993 1629 565 239 116 90 chr1 260387341 260387569 -21806095 - Charlie7 DNA MER1_type -1895 717 478 2364 58 7 3 chr1 260387569 260387877 -21805787 - AluY SINE Alu -2 309 1 565 239 116 90 chr1 260387877 260387949 -21805715 - Charlie7 DNA MER1_type -2134 478 409 2484 4 0 0 chr1 260387954 260388229 -21805435 - AluY SINE Alu -3 308 34 310 265 82 10 chr1 260388248 260388346 -21805318 - L1MC5 LINE L1 -36 7925 7821 417 231 18 59 chr1 260388565 260388734 -21804930 - MER41B LTR ERV1 -216 419 258 461 157 67 30 chr1 260388900 260389034 -21804630 - L1MC5 LINE L1 -166 7795 7657 2107 85 144 12 chr1 260390410 260390787 -21802877 - MER4C LTR ERV1 0 610 31 189 0 0 0 chr1 260390803 260390824 -21802840 + (A)n Simple_repeat Simple_repeat 1 21 0 2272 92 0 26 chr1 260393150 260393456 -21800208 + AluSx SINE Alu 1 298 -14 1088 179 14 31 chr1 260393611 260393834 -21799830 - MER20 DNA MER1_type 0 219 1 572 272 14 0 chr1 260395369 260395516 -21798148 - L1ME1 LINE L1 -13 6153 6005 225 294 0 0 chr1 260395727 260395795 -21797869 + GA-rich Low_complexity Low_complexity 1 68 0 792 30 0 0 chr1 260396358 260396457 -21797207 + (GA)n Simple_repeat Simple_repeat 1 99 0 225 298 219 0 chr1 260398972 260399123 -21794541 + MIR SINE MIR 79 262 0 1795 141 54 11 chr1 260399197 260399474 -21794190 + AluJb SINE Alu 1 289 -23 185 310 17 0 chr1 260399587 260399645 -21794019 + L2 LINE L2 3249 3307 -6 2459 151 82 4 chr1 260399719 260400184 -21793480 - MLT1D LTR MaLR -4 501 1 447 226 39 33 chr1 260401499 260401641 -21792023 - MIR SINE MIR -48 160 15 638 207 122 77 chr1 260402116 260402338 -21791326 + MIR SINE MIR 31 262 0 761 138 4 200 chr1 260403348 260403588 -21790076 - MER58A DNA MER1_type -31 193 1 22 35 0 0 chr1 260404010 260404039 -21789625 + AT_rich Low_complexity Low_complexity 1 29 0 1759 150 18 11 chr1 260404045 260404359 -21789305 - AluJo SINE Alu 0 316 1 229 139 14 56 chr1 260404378 260404450 -21789214 - L1ME4a LINE L1 0 6121 6053 340 322 0 72 chr1 260404586 260404668 -21788996 - L1ME4a LINE L1 -220 5901 5833 2243 124 0 0 chr1 260404668 260404975 -21788689 - AluSg SINE Alu -3 307 1 340 322 0 72 chr1 260404975 260405044 -21788620 - L1ME4a LINE L1 -288 5833 5761 761 191 62 22 chr1 260406055 260406233 -21787431 + MER5A DNA MER1_type 5 189 0 186 354 101 10 chr1 260406349 260406448 -21787216 - L2 LINE L2 -1 3312 3205 417 279 1 45 chr1 260407186 260407970 -21785694 + CT-rich Low_complexity Low_complexity 1 749 0 376 328 0 0 chr1 260408028 260408208 -21785456 + CT-rich Low_complexity Low_complexity 1 180 0 376 292 0 30 chr1 260408263 260408762 -21784902 + CT-rich Low_complexity Low_complexity 1 483 0 962 186 6 0 chr1 260410490 260410657 -21783007 + FAM SINE Alu 5 172 -3 761 107 0 50 chr1 260411207 260411490 -21782174 + (TGG)n Simple_repeat Simple_repeat 1 268 0 540 130 0 61 chr1 260411522 260411786 -21781878 + (TGG)n Simple_repeat Simple_repeat 1 247 0 1778 200 17 9 chr1 260412979 260413324 -21780340 - MLT1A1 LTR MaLR 0 365 18 273 257 177 18 chr1 260414087 260414200 -21779464 - MIR SINE MIR -112 150 20 2411 91 0 0 chr1 260414853 260415150 -21778514 - AluSx SINE Alu -9 303 7 319 261 46 11 chr1 260415206 260415347 -21778317 + MIR SINE MIR 46 194 -14 216 232 71 61 chr1 260415533 260415632 -21778032 - MIR SINE MIR -117 145 46 388 284 4 82 chr1 260419242 260419323 -21774341 - MER112 DNA MER1_type -13 247 161 2014 110 0 11 chr1 260419323 260419595 -21774069 + AluSx SINE Alu 23 291 -21 388 284 4 82 chr1 260419595 260419770 -21773894 - MER112 DNA MER1_type -99 161 11 378 298 147 0 chr1 260420307 260420552 -21773112 - L1MCa LINE L1 -3425 3001 2721 1156 108 0 0 chr1 260420552 260420700 -21772964 - AluSg/x SINE Alu -14 298 151 659 37 0 0 chr1 260420704 260420786 -21772878 - AluY SINE Alu -227 83 2 657 312 72 67 chr1 260420789 260421228 -21772436 - L1MCa LINE L1 -3698 2728 2293 1848 141 58 0 chr1 260421228 260421504 -21772160 - AluSx SINE Alu -20 292 1 1737 141 102 0 chr1 260421505 260421818 -21771846 - MER7A DNA MER2_type -3 343 1 657 312 72 67 chr1 260421818 260422178 -21771486 - L1MCa LINE L1 -4133 2293 1936 1648 152 0 8 chr1 260422178 260422435 -21771229 - AluSq SINE Alu -1 312 58 657 312 72 67 chr1 260422435 260422550 -21771114 - L1MCa LINE L1 -4490 1936 1823 2157 126 23 0 chr1 260422550 260422851 -21770813 + AluY SINE Alu 1 308 -3 657 312 72 67 chr1 260422851 260423346 -21770318 - L1MCa LINE L1 -4603 1823 1153 205 302 32 0 chr1 260423533 260423596 -21770068 + GA-rich Low_complexity Low_complexity 97 161 0 356 276 57 0 chr1 260424632 260424737 -21768927 - MIR3 SINE MIR -54 154 44 742 204 77 0 chr1 260426630 260426811 -21766853 + MER33 DNA MER1_type 5 199 -125 2191 124 7 0 chr1 260427532 260427831 -21765833 + AluSx SINE Alu 1 301 -11 2118 151 101 5 chr1 260428243 260428628 -21765036 + MSTB LTR MaLR 1 422 -4 382 276 184 18 chr1 260429201 260429429 -21764235 - L2 LINE L2 -1 3312 3047 1732 222 88 40 chr1 260429704 260430298 -21763366 - L1MC4 LINE L1 -2 8040 7419 24 0 0 0 chr1 260431152 260431176 -21762488 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr1 260431946 260431976 -21761688 + AT_rich Low_complexity Low_complexity 1 30 0 599 294 125 27 chr1 260432656 260433023 -21760641 - L2 LINE L2 -939 2375 1973 637 246 99 0 chr1 260433187 260433378 -21760286 + MIR SINE MIR 53 262 0 2510 66 10 0 chr1 260433661 260433964 -21759700 + AluSx SINE Alu 1 306 -6 2208 70 0 7 chr1 260434389 260434662 -21759002 + AluY SINE Alu 39 309 -2 21 36 0 0 chr1 260434781 260434809 -21758855 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 260437349 260437372 -21756292 + AT_rich Low_complexity Low_complexity 1 23 0 1845 165 3 16 chr1 260438047 260438363 -21755301 + AluJo SINE Alu 1 312 0 27 0 0 0 chr1 260439794 260439821 -21753843 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 260439921 260439942 -21753722 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr1 260440038 260440078 -21753586 + AT_rich Low_complexity Low_complexity 1 40 0 319 192 77 13 chr1 260440343 260440421 -21753243 + MER63 DNA MER1_type 9 717 -119 1014 265 120 10 chr1 260444163 260445077 -21748587 - L1ME3A LINE L1 -230 5940 4931 301 98 0 0 chr1 260445300 260445369 -21748295 + Alu SINE Alu 242 310 0 198 351 65 13 chr1 260445509 260445586 -21748078 + L3 LINE CR1 1495 1575 -2 2359 93 0 6 chr1 260446352 260446664 -21747000 + AluY SINE Alu 1 310 -1 434 313 30 12 chr1 260447010 260447176 -21746488 - MIR SINE MIR -39 223 55 25 31 0 0 chr1 260448291 260448323 -21745341 + AT_rich Low_complexity Low_complexity 1 32 0 37 39 0 0 chr1 260448410 260448461 -21745203 + AT_rich Low_complexity Low_complexity 1 51 0 529 198 58 8 chr1 260449129 260449250 -21744414 + L2 LINE L2 3182 3308 -5 303 217 152 33 chr1 260450701 260450793 -21742871 - L2 LINE L2 -4 3309 3207 22 56 0 0 chr1 260451928 260451964 -21741700 + AT_rich Low_complexity Low_complexity 1 36 0 891 240 32 18 chr1 260452483 260452700 -21740964 + MER58A DNA MER1_type 2 221 -3 21 0 0 0 chr1 260452705 260452726 -21740938 + AT_rich Low_complexity Low_complexity 1 21 0 2199 124 7 0 chr1 260456325 260456631 -21737033 - AluSx SINE Alu -4 308 1 744 250 71 5 chr1 260457212 260457396 -21736268 + MIR SINE MIR 11 206 -56 1092 163 199 0 chr1 260458895 260459091 -21734573 + MER46A DNA MER2_type 2 236 0 2083 137 48 23 chr1 260459879 260460230 -21733434 - MER46B DNA MER2_type -1 235 1 887 207 58 117 chr1 260461410 260461531 -21732133 - L1MC5 LINE L1 -52 7909 7782 2227 111 0 3 chr1 260461531 260461828 -21731836 - AluSq SINE Alu -17 296 1 887 207 58 117 chr1 260461828 260462112 -21731552 - L1MC5 LINE L1 -179 7782 7483 1343 189 10 65 chr1 260462112 260462419 -21731245 - AluJo SINE Alu -22 290 1 887 207 58 117 chr1 260462419 260462505 -21731159 - L1MC5 LINE L1 -478 7483 7448 2368 103 0 3 chr1 260462505 260462817 -21730847 + AluY SINE Alu 1 311 0 887 207 58 117 chr1 260462817 260462854 -21730810 - L1MC5 LINE L1 -513 7448 7410 394 302 53 69 chr1 260462851 260463722 -21729942 - L1MEc LINE L1 -4754 1642 786 * 2288 113 0 0 chr1 260464318 260464618 -21729046 + AluSx SINE Alu 1 300 -12 1219 230 110 72 chr1 260464840 260465323 -21728341 + MLT2B1 LTR ERVL 20 520 0 740 265 82 0 chr1 260465344 260465540 -21728124 - MER58C DNA MER1_type 0 215 4 2969 247 74 12 chr1 260465901 260466748 -21726916 - L1ME1 LINE L1 -4 6660 5867 1424 205 51 20 chr1 260466748 260467041 -21726623 - AluJb SINE Alu -6 306 5 2969 247 74 12 chr1 260467041 260467798 -21725866 - L1ME1 LINE L1 -797 5867 4953 232 224 66 40 chr1 260467802 260467878 -21725786 - L1ME1 LINE L1 -6418 124 47 725 252 101 9 chr1 260468172 260468390 -21725274 + MIR SINE MIR 19 256 -6 8009 54 3 7 chr1 260468535 260469539 -21724125 - L1P LINE L1 -4550 1596 597 * 11183 107 7 8 chr1 260469537 260471217 -21722447 - L1P LINE L1 -2167 3979 2303 324 242 11 70 chr1 260471900 260472086 -21721578 + (CCCA)n Simple_repeat Simple_repeat 3 177 0 432 244 41 12 chr1 260472116 260472288 -21721376 + (CCCA)n Simple_repeat Simple_repeat 2 178 0 390 262 16 49 chr1 260472424 260472791 -21720873 + (CCCA)n Simple_repeat Simple_repeat 1 354 0 247 264 0 0 chr1 260475585 260475638 -21718026 + (TG)n Simple_repeat Simple_repeat 2 54 0 219 352 0 0 chr1 260482816 260482870 -21710794 - MIR SINE MIR -186 76 23 637 270 56 19 chr1 260482884 260483099 -21710565 + MER58A DNA MER1_type 2 224 0 201 302 0 0 chr1 260485969 260486022 -21707642 + MER5B DNA MER1_type 121 173 -5 202 231 0 31 chr1 260486682 260486747 -21706917 + GA-rich Low_complexity Low_complexity 5 67 0 206 267 33 0 chr1 260487918 260487978 -21705686 + L2 LINE L2 3205 3266 -6 200 228 70 0 chr1 260488715 260488772 -21704892 + MER5B DNA MER1_type 41 101 -77 11341 81 16 1 chr1 260488791 260490465 -21703199 - L1PA7 LINE L1 -1819 4327 2629 7759 80 2 11 chr1 260490465 260491677 -21701987 + L1PA7 LINE L1 4305 5514 -665 2339 91 0 0 chr1 260491677 260491973 -21701691 - AluY SINE Alu -15 296 1 7759 80 2 11 chr1 260491973 260492634 -21701030 + L1PA7 LINE L1 5514 6179 0 426 255 124 21 chr1 260492941 260493086 -21700578 + MIR SINE MIR 24 183 -79 482 202 10 10 chr1 260494023 260494122 -21699542 + MER46C DNA MER2_type 14 112 -226 2356 103 0 0 chr1 260494122 260494484 -21699180 + AluSx SINE Alu 1 362 0 398 199 137 106 chr1 260494485 260494711 -21698953 + MER46C DNA MER2_type 104 336 -2 267 314 0 51 chr1 260494956 260494987 -21698677 + L2 LINE L2 3197 3228 -85 1731 207 58 88 chr1 260494987 260495542 -21698122 + MLT1F LTR MaLR 5 542 0 267 314 0 51 chr1 260495542 260495628 -21698036 + L2 LINE L2 3228 3308 -5 189 288 68 76 chr1 260496366 260496484 -21697180 + L2 LINE L2 3153 3269 -3 844 309 73 31 chr1 260496667 260497146 -21696518 + L2 LINE L2 2436 2934 -380 184 319 88 22 chr1 260497272 260497363 -21696301 + L2 LINE L2 3136 3232 -40 346 284 91 23 chr1 260498848 260499024 -21694640 + MIR SINE MIR 8 195 -67 1955 95 3 58 chr1 260499160 260499498 -21694166 + AluSg SINE Alu 1 322 0 211 204 259 0 chr1 260500612 260500666 -21692998 + L2 LINE L2 3246 3313 0 21 36 0 0 chr1 260500984 260501012 -21692652 + AT_rich Low_complexity Low_complexity 1 28 0 1782 168 0 24 chr1 260501928 260502219 -21691445 - AluJb SINE Alu -26 286 3 22 56 0 0 chr1 260502363 260502399 -21691265 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1 260503770 260503802 -21689862 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr1 260505109 260505130 -21688534 + AT_rich Low_complexity Low_complexity 1 21 0 299 310 0 0 chr1 260505368 260505455 -21688209 + L2 LINE L2 3227 3313 0 21 0 0 0 chr1 260506233 260506254 -21687410 + AT_rich Low_complexity Low_complexity 1 21 0 1503 165 62 38 chr1 260507470 260507648 -21686016 - AluJo SINE Alu -14 298 109 2197 121 7 0 chr1 260507648 260507946 -21685718 + AluSg SINE Alu 1 300 -10 1503 165 62 38 chr1 260507946 260508058 -21685606 - AluJo SINE Alu -203 109 1 243 0 0 0 chr1 260510536 260510563 -21683101 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1019 136 0 13 chr1 260510565 260510719 -21682945 - FRAM SINE Alu -27 149 1 292 227 227 8 chr1 260511121 260511171 -21682493 - MER69A DNA AcHobo -2369 157 119 14047 131 32 14 chr1 260511171 260512402 -21681262 - Tigger1 DNA MER2_type 0 2418 1211 2334 101 3 0 chr1 260512402 260512699 -21680965 - AluSp SINE Alu -15 298 1 14047 131 32 14 chr1 260512699 260513841 -21679823 - Tigger1 DNA MER2_type -1207 1211 1 292 227 227 8 chr1 260513841 260513918 -21679746 - MER69A DNA AcHobo -2407 119 2 2326 83 0 25 chr1 260514241 260514555 -21679109 + AluSc SINE Alu 1 306 -3 2066 142 0 7 chr1 260514653 260514949 -21678715 + AluSx SINE Alu 1 294 -18 368 240 21 21 chr1 260515619 260515715 -21677949 + MIR SINE MIR 11 106 -156 21 0 0 0 chr1 260515888 260515909 -21677755 + AT_rich Low_complexity Low_complexity 1 21 0 928 303 98 9 chr1 260516397 260517235 -21676429 + L1ME3 LINE L1 5030 5949 -213 2077 150 0 0 chr1 260517464 260517770 -21675894 + AluSx SINE Alu 1 306 -6 22 88 0 0 chr1 260518063 260518120 -21675544 + AT_rich Low_complexity Low_complexity 1 57 0 231 234 16 31 chr1 260519063 260519127 -21674537 + L2 LINE L2 3251 3313 0 1498 168 95 11 chr1 260519330 260519592 -21674072 - AluJo SINE Alu -24 288 5 186 371 16 0 chr1 260520191 260520253 -21673411 + L2 LINE L2 3141 3203 -69 1537 197 10 27 chr1 260520340 260520639 -21673025 + AluJo SINE Alu 3 296 -16 2304 97 7 0 chr1 260522356 260522655 -21671009 + AluSp SINE Alu 1 301 -12 23 33 0 0 chr1 260522744 260522774 -21670890 + AT_rich Low_complexity Low_complexity 1 30 0 247 259 169 42 chr1 260523381 260523547 -21670117 - MIR SINE MIR -6 256 70 319 313 81 0 chr1 260523653 260523752 -21669912 - L2 LINE L2 -2 3270 3164 675 267 131 25 chr1 260524306 260524542 -21669122 - MIR SINE MIR 0 262 2 1078 229 108 48 chr1 260525046 260525482 -21668182 + MLT1H LTR MaLR 81 542 -7 29 0 0 0 chr1 260526027 260526056 -21667608 + AT_rich Low_complexity Low_complexity 1 29 0 254 171 5 146 chr1 260526141 260526236 -21667428 - MIR SINE MIR -105 103 17 333 292 97 26 chr1 260526518 260526744 -21666920 - L2 LINE L2 -977 2337 2096 551 214 116 0 chr1 260528798 260528910 -21664754 - FLAM_A SINE Alu -12 130 6 2546 39 0 7 chr1 260528925 260529233 -21664431 - AluY SINE Alu -5 306 1 223 365 140 21 chr1 260529710 260529995 -21663669 + L2 LINE L2 2003 2321 -993 451 317 78 6 chr1 260529998 260530165 -21663499 + L3 LINE CR1 1382 1560 -17 8718 103 23 10 chr1 260530251 260530532 -21663132 + HSMAR2 DNA Mariner 2 278 -1024 2721 86 8 0 chr1 260530532 260530893 -21662771 + THE1B LTR MaLR 1 364 0 8718 103 23 10 chr1 260530893 260531894 -21661770 + HSMAR2 DNA Mariner 278 1301 -1 397 236 89 49 chr1 260532078 260532201 -21661463 + L2 LINE L2 3182 3309 -4 642 244 55 24 chr1 260533486 260533650 -21660014 + MIR SINE MIR 80 248 -14 1205 139 37 9 chr1 260533656 260533871 -21659793 - L1PA16 LINE L1 -9 6157 5937 209 32 0 32 chr1 260534787 260534818 -21658846 + (TA)n Simple_repeat Simple_repeat 2 31 0 8053 35 0 0 chr1 260535913 260537645 -21656019 - L1PA3 LINE L1 -2 6153 4421 3140 45 1 1 chr1 260537645 260538052 -21655612 + L1P LINE L1 4056 4461 -1685 197 278 0 0 chr1 260538084 260538138 -21655526 + L2 LINE L2 3213 3266 -6 1674 151 68 0 chr1 260538372 260538683 -21654981 + L1PA16 LINE L1 5827 6158 -8 345 319 26 64 chr1 260540069 260540382 -21653282 + HAL1b LINE L1 345 645 -703 397 312 106 73 chr1 260540382 260540968 -21652696 + HAL1 LINE L1 290 894 -1613 1805 163 3 0 chr1 260540974 260541263 -21652401 + AluJb SINE Alu 8 297 -15 1629 248 177 67 chr1 260541327 260542640 -21651024 + HAL1 LINE L1 1047 2503 -4 707 286 95 45 chr1 260542695 260543296 -21650368 + L1ME LINE L1 5107 5738 -383 29 67 0 13 chr1 260543614 260543642 -21650022 + AT_rich Low_complexity Low_complexity 1 28 -46 2191 107 0 3 chr1 260543642 260543941 -21649723 - AluSc SINE Alu -11 298 1 29 67 0 13 chr1 260543941 260543987 -21649677 + AT_rich Low_complexity Low_complexity 28 74 0 382 197 92 0 chr1 260544138 260544214 -21649450 - L1MC4 LINE L1 -563 7479 7397 1364 188 97 22 chr1 260544286 260544700 -21648964 + LTR56 LTR ERV1 1 445 0 1519 204 50 32 chr1 260545073 260545510 -21648154 + LTR56 LTR ERV1 1 445 0 2204 116 0 3 chr1 260546487 260546788 -21646876 - AluSx SINE Alu -11 301 2 563 347 156 16 chr1 260547224 260547841 -21645823 + L2 LINE L2 1656 2358 -956 738 252 231 32 chr1 260547867 260548339 -21645325 + L2 LINE L2 1459 2024 -1290 4285 131 30 16 chr1 260548339 260549043 -21644621 + MER50 LTR ERV1 1 714 -20 1930 264 54 68 chr1 260549043 260549779 -21643885 + L2 LINE L2 2023 2748 -566 237 256 0 0 chr1 260549781 260549824 -21643840 + Tigger3(Golem) DNA MER2_type 2 44 -2985 235 116 163 0 chr1 260549859 260549902 -21643762 - Tigger3(Golem) DNA MER2_type -2940 89 40 * 1988 160 52 22 chr1 260549898 260550267 -21643397 + Tigger3b DNA MER2_type 75 454 -777 574 81 0 0 chr1 260550269 260550343 -21643321 + Tigger3b DNA MER2_type 875 948 -283 304 241 0 0 chr1 260550361 260550419 -21643245 + Tigger3b DNA MER2_type 1175 1232 0 548 288 169 37 chr1 260550424 260550923 -21642741 + L2 LINE L2 2740 3313 0 476 352 185 10 chr1 260550964 260551444 -21642220 + L2 LINE L2 2412 2975 -339 506 281 0 0 chr1 260551491 260551619 -21642045 - FLAM_A SINE Alu 0 142 15 192 40 0 0 chr1 260551645 260551670 -21641994 + (TG)n Simple_repeat Simple_repeat 1 25 0 250 337 255 9 chr1 260551827 260552153 -21641511 + L2 LINE L2 2570 2975 -339 588 250 0 0 chr1 260552200 260552328 -21641336 - FLAM_A SINE Alu 0 142 15 312 27 0 0 chr1 260552354 260552391 -21641273 + (TG)n Simple_repeat Simple_repeat 1 37 0 272 312 232 0 chr1 260552446 260552584 -21641080 + L2 LINE L2 3103 3272 0 21 0 0 0 chr1 260552884 260552905 -21640759 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr1 260554409 260554446 -21639218 + AT_rich Low_complexity Low_complexity 1 37 0 458 148 37 0 chr1 260556172 260556253 -21637411 + MLT1C LTR MaLR 4 87 -380 1303 214 101 14 chr1 260556360 260556716 -21636948 + L1ME2 LINE L1 5767 6153 -11 992 294 112 16 chr1 260556755 260557526 -21636138 + L1M4 LINE L1 3524 4368 -1778 968 218 42 5 chr1 260558252 260558468 -21635196 + MER58A DNA MER1_type 1 224 0 1838 151 0 0 chr1 260558521 260558793 -21634871 + AluJb SINE Alu 1 272 -40 1905 272 141 25 chr1 260558914 260559731 -21633933 + L2 LINE L2 1356 2267 -1047 873 261 92 45 chr1 260559805 260560282 -21633382 + L2 LINE L2 2687 3177 -136 800 121 9 9 chr1 260560705 260560821 -21632843 - FLAM_C SINE Alu -19 124 9 400 288 205 40 chr1 260561192 260561299 -21632365 - L3 LINE CR1 -112 1465 1377 2045 128 0 3 chr1 260561299 260561605 -21632059 - AluSp SINE Alu -8 305 1 400 288 205 40 chr1 260561605 260561775 -21631889 - L3 LINE CR1 -200 1377 1142 205 268 36 0 chr1 260561840 260561896 -21631768 - L3 LINE CR1 -434 1143 1086 3445 177 32 13 chr1 260562109 260562936 -21630728 - L1MB4 LINE L1 -231 5949 5110 793 190 73 6 chr1 260562921 260563100 -21630564 - L1MB4 LINE L1 -2401 3745 3555 * 1629 215 96 0 chr1 260563078 260563506 -21630158 - L1M4 LINE L1 -1025 5121 4653 2436 215 31 104 chr1 260563608 260564630 -21629034 - L1M4 LINE L1 -2553 3593 2646 935 164 0 7 chr1 260564630 260564782 -21628882 + MER2 DNA MER2_type 3 153 -192 * 3536 127 48 72 chr1 260564781 260565402 -21628262 - Tigger3b DNA MER2_type -1797 1232 631 2210 113 0 0 chr1 260565402 260565694 -21627970 - AluSx SINE Alu -20 292 1 3536 127 48 72 chr1 260565694 260565835 -21627829 - Tigger3b DNA MER2_type -2398 631 488 556 167 0 11 chr1 260565835 260565925 -21627739 - Tigger3b DNA MER2_type -1123 108 20 993 172 54 11 chr1 260565933 260566119 -21627545 + MER2 DNA MER2_type 151 344 -1 507 250 34 0 chr1 260566122 260566270 -21627394 - L1M4 LINE L1 -3499 2647 2495 287 250 259 0 chr1 260566319 260566435 -21627229 - MIR SINE MIR -10 252 107 274 309 235 7 chr1 260566515 260566664 -21627000 + MIR3 SINE MIR 19 201 -7 205 344 93 53 chr1 260566961 260567112 -21626552 - L2 LINE L2 0 3272 3116 258 248 0 155 chr1 260567477 260567520 -21626144 - MIR SINE MIR -122 140 92 2182 86 17 0 chr1 260567520 260567811 -21625853 - AluSp SINE Alu -17 296 1 258 248 0 155 chr1 260567811 260567896 -21625768 - MIR SINE MIR -170 92 32 47 44 0 0 chr1 260568566 260568634 -21625030 + AT_rich Low_complexity Low_complexity 1 68 0 563 336 79 18 chr1 260569385 260569715 -21623949 + L1MEd LINE L1 647 996 -5209 1497 195 28 47 chr1 260569759 260570077 -21623587 + AluJb SINE Alu 1 312 0 306 287 117 82 chr1 260570208 260570584 -21623080 + L1MEd LINE L1 1429 1817 -4579 1201 132 127 5 chr1 260570704 260570901 -21622763 + MER46A DNA MER2_type 16 236 0 702 154 15 0 chr1 260571076 260571206 -21622458 + L1MB2 LINE L1 6038 6169 -2 646 309 94 16 chr1 260571347 260571848 -21621816 + L1MEd LINE L1 2425 2964 -3251 875 279 35 9 chr1 260572019 260572248 -21621416 + MIR SINE MIR 24 258 -4 1193 265 19 16 chr1 260572273 260572639 -21621025 + L1MEd LINE L1 3871 4237 -1978 653 269 51 63 chr1 260572969 260573319 -21620345 - LTR68 LTR ERV1 -392 348 3 265 173 0 148 chr1 260573323 260573374 -21620290 + L1MEd LINE L1 4609 4645 -1570 1708 174 17 14 chr1 260573374 260573668 -21619996 - AluJb SINE Alu -17 295 1 265 173 0 148 chr1 260573668 260573697 -21619967 + L1MEd LINE L1 4645 4677 -1538 508 286 108 10 chr1 260573729 260574246 -21619418 + L1MEd LINE L1 5086 5651 -584 1198 158 5 14 chr1 260574269 260574484 -21619180 + L1M2 LINE L1 5307 5519 -793 227 260 0 82 chr1 260574669 260574742 -21618922 - LTR68 LTR ERV1 -412 328 262 28 0 0 0 chr1 260575454 260575482 -21618182 + AT_rich Low_complexity Low_complexity 1 28 0 422 262 65 9 chr1 260576490 260576597 -21617067 - MIR3 SINE MIR -48 160 48 2118 128 43 18 chr1 260576858 260577187 -21616477 - MER1B DNA MER1_type 0 337 1 389 245 31 0 chr1 260577187 260577285 -21616379 + MER5A DNA MER1_type 9 109 -80 2407 100 0 0 chr1 260577841 260578152 -21615512 - AluSx SINE Alu -1 311 1 1941 144 10 7 chr1 260579073 260579365 -21614299 + AluSx SINE Alu 1 293 -19 29 0 0 0 chr1 260580088 260580117 -21613547 + AT_rich Low_complexity Low_complexity 1 29 0 223 391 8 23 chr1 260580127 260580260 -21613404 - L2 LINE L2 -8 3264 3134 318 347 41 25 chr1 260580689 260580885 -21612779 - L2 LINE L2 -428 2886 2688 2099 251 34 28 chr1 260580885 260581383 -21612281 + L1MDa LINE L1 15 519 -6021 1736 147 55 14 chr1 260581383 260581675 -21611989 + AluSx SINE Alu 2 305 -7 2099 251 34 28 chr1 260581675 260581786 -21611878 + L1MDa LINE L1 519 628 -5912 627 171 0 18 chr1 260581792 260581903 -21611761 + MER8 DNA MER2_type 131 239 0 36 53 0 0 chr1 260581921 260581978 -21611686 + AT_rich Low_complexity Low_complexity 1 57 0 1501 139 94 0 chr1 260581978 260582244 -21611420 - MER54B LTR ERVL -14 779 489 548 28 0 14 chr1 260582513 260582584 -21611080 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 1768 216 139 18 chr1 260582593 260583247 -21610417 + L1M4 LINE L1 3684 4416 -1730 1281 290 31 45 chr1 260584029 260584639 -21609025 + L2 LINE L2 2712 3310 -3 278 333 36 87 chr1 260584856 260585108 -21608556 + L2 LINE L2 3033 3271 -1 1780 165 3 0 chr1 260585462 260585747 -21607917 + AluJb SINE Alu 25 310 -2 325 344 25 25 chr1 260585855 260586018 -21607646 - Tigger8 DNA MER2_type -502 164 2 22 56 0 0 chr1 260586046 260586082 -21607582 + AT_rich Low_complexity Low_complexity 1 36 0 205 161 0 0 chr1 260586323 260586354 -21607310 + (TG)n Simple_repeat Simple_repeat 2 32 0 2247 111 3 0 chr1 260586630 260586928 -21606736 + AluSx SINE Alu 6 304 -8 466 325 171 4 chr1 260586953 260587233 -21606431 + L2 LINE L2 405 731 -2583 501 280 124 19 chr1 260587250 260587507 -21606157 + MLT1L LTR MaLR 4 287 -328 228 304 11 54 chr1 260587625 260587717 -21605947 - Tigger8 DNA MER2_type -502 164 77 6328 64 27 49 chr1 260588168 260590053 -21603611 + SVA Other Other 5 1405 0 1216 300 141 6 chr1 260590064 260590590 -21603074 + L2 LINE L2 801 1397 -1917 262 323 19 63 chr1 260590583 260590741 -21602923 + L2 LINE L2 3163 3313 0 * 1498 108 0 0 chr1 260591626 260591821 -21601843 + AluY SINE Alu 1 195 -116 32 0 0 0 chr1 260592254 260592286 -21601378 + AT_rich Low_complexity Low_complexity 1 32 0 759 282 25 33 chr1 260592466 260592830 -21600834 - L1MC5 LINE L1 -871 7022 6580 1748 132 4 8 chr1 260592830 260593081 -21600583 - AluSx SINE Alu -62 250 1 759 282 25 33 chr1 260593081 260593186 -21600478 - L1MC5 LINE L1 -1313 6580 6476 411 285 36 36 chr1 260593689 260593854 -21599810 - L2 LINE L2 -1243 2071 1907 * 1279 329 98 14 chr1 260593853 260594518 -21599146 - L2 LINE L2 -2027 1287 567 23 0 0 0 chr1 260594770 260594793 -21598871 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 260595177 260595198 -21598466 + AT_rich Low_complexity Low_complexity 1 21 0 1619 80 31 9 chr1 260596669 260596894 -21596770 + MER30 DNA MER1_type 1 230 0 2457 254 30 34 chr1 260597810 260598672 -21594992 - L1ME3 LINE L1 -22 6209 5351 1064 289 76 41 chr1 260598713 260599800 -21593864 - L1ME3 LINE L1 -4452 1944 820 3545 224 39 18 chr1 260599959 260601484 -21592180 - L1MD2 LINE L1 -226 6133 4573 21 0 0 0 chr1 260601892 260601913 -21591751 + AT_rich Low_complexity Low_complexity 1 21 0 3848 127 49 10 chr1 260601945 260602561 -21591103 + LTR9B LTR ERV1 5 644 0 886 137 33 0 chr1 260602622 260602775 -21590889 + L1MCa LINE L1 36 193 -6233 198 0 0 0 chr1 260604223 260604245 -21589419 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 341 325 7 40 chr1 260604316 260604467 -21589197 - MIR SINE MIR -89 173 28 2421 109 0 0 chr1 260605444 260605756 -21587908 - AluSx SINE Alu 0 312 1 450 283 88 85 chr1 260605808 260606137 -21587527 + L1MEd LINE L1 16 345 -5774 458 290 138 27 chr1 260606312 260606609 -21587055 + L1MEd LINE L1 601 930 -5189 2041 129 4 0 chr1 260607293 260607593 -21586071 + AluSx SINE Alu 1 301 0 22 0 0 0 chr1 260607647 260607669 -21585995 + AT_rich Low_complexity Low_complexity 1 22 0 2379 87 3 0 chr1 260607925 260608224 -21585440 - AluSx SINE Alu -12 300 1 1743 157 89 0 chr1 260608800 260609081 -21584583 + AluJb SINE Alu 1 306 -6 340 228 59 29 chr1 260609092 260609228 -21584436 - L1MD2 LINE L1 -2450 3696 3557 310 289 19 10 chr1 260609281 260609385 -21584279 - L1MC4a LINE L1 -1641 6167 6063 563 247 50 11 chr1 260609453 260609635 -21584029 - L1MC4a LINE L1 -1886 5922 5734 2291 84 13 0 chr1 260609775 260610074 -21583590 + AluSp SINE Alu 1 303 -10 1414 141 84 38 chr1 260610094 260610383 -21583281 + AluJo SINE Alu 10 310 0 1012 226 18 18 chr1 260610395 260610616 -21583048 + MER58A DNA MER1_type 1 221 -3 705 266 98 8 chr1 260610697 260611066 -21582598 + L1MEd LINE L1 2295 2696 -3433 2897 153 33 13 chr1 260611075 260611617 -21582047 + L1MC1 LINE L1 5781 6333 0 1560 242 55 70 chr1 260611617 260612551 -21581113 + L1MEd LINE L1 3827 4746 -1383 976 171 33 57 chr1 260612653 260612864 -21580800 + AluJo SINE Alu 98 303 -9 1044 291 74 0 chr1 260612864 260613214 -21580450 - L2 LINE L2 -1998 1316 941 2229 109 0 0 chr1 260613493 260613786 -21579878 - AluSg SINE Alu -17 293 1 3084 189 33 22 chr1 260614127 260614769 -21578895 - MER82 DNA MER2_type -4 649 1 2035 145 3 3 chr1 260615163 260615474 -21578190 + AluY SINE Alu 1 311 0 2095 117 3 0 chr1 260616011 260616293 -21577371 - AluSx SINE Alu -29 283 1 459 310 81 0 chr1 260616347 260616608 -21577056 + L1M4 LINE L1 3879 4160 -1986 940 97 22 37 chr1 260616608 260616742 -21576922 + AluSc SINE Alu 1 132 -177 703 57 0 0 chr1 260616763 260616851 -21576813 + L1P LINE L1 11 98 -6048 3357 115 3 0 chr1 260616854 260617504 -21576160 + L1P LINE L1 319 1124 -5022 7272 47 3 1 chr1 260617504 260618954 -21574710 + L1PA5 LINE L1 4692 6149 -5 1317 101 0 6 chr1 260618956 260619134 -21574530 + AluSc SINE Alu 131 307 -2 245 234 95 7 chr1 260619474 260619611 -21574053 + L1M4 LINE L1 4509 4657 -1489 320 284 95 28 chr1 260619998 260620283 -21573381 + L1MDa LINE L1 1645 1948 -4592 * 534 209 79 0 chr1 260620255 260620394 -21573270 + L1M4 LINE L1 4851 5000 -1540 1151 96 0 48 chr1 260620498 260620707 -21572957 - L1PA10 LINE L1 -83 6085 5887 272 246 138 8 chr1 260620714 260620844 -21572820 + L1MDa LINE L1 2964 3110 -3430 259 179 48 60 chr1 260620845 260620929 -21572735 - L1M4 LINE L1 -1800 4346 4264 344 315 63 14 chr1 260623145 260623288 -21570376 + L2 LINE L2 3120 3269 -44 359 226 9 19 chr1 260623591 260623697 -21569967 - L1ME4a LINE L1 -266 5855 5751 484 246 8 40 chr1 260623700 260623826 -21569838 + L2 LINE L2 3191 3312 -1 291 254 59 42 chr1 260623838 260623956 -21569708 - L1ME4a LINE L1 -391 5730 5611 478 103 13 13 chr1 260624187 260624265 -21569399 + AluS SINE Alu 1 78 -235 865 259 62 76 chr1 260624732 260625779 -21567885 - L1ME LINE L1 -4457 1623 707 1895 121 15 95 chr1 260625787 260626135 -21567529 + THE1B LTR MaLR 6 321 -43 2146 120 3 0 chr1 260626135 260626436 -21567228 - AluSp SINE Alu -11 302 1 1895 121 15 95 chr1 260626436 260626477 -21567187 + THE1B LTR MaLR 321 364 0 1528 179 41 26 chr1 260626651 260626992 -21566672 + L1MB8 LINE L1 5827 6172 -6 2600 52 0 0 chr1 260626996 260627302 -21566362 + AluY SINE Alu 1 306 -5 1910 120 7 0 chr1 260627571 260627845 -21565819 + AluSx SINE Alu 5 280 -32 216 0 0 0 chr1 260627848 260627872 -21565792 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr1 260627961 260627992 -21565672 + AT_rich Low_complexity Low_complexity 1 31 0 558 249 49 40 chr1 260629711 260629936 -21563728 + L2 LINE L2 2034 2260 -1054 403 235 81 29 chr1 260629943 260630079 -21563585 + MER31-int LTR ERV1 3919 4061 -875 558 197 90 6 chr1 260630110 260630288 -21563376 - L1MD3 LINE L1 -9 7986 7794 1736 218 83 57 chr1 260630291 260630819 -21562845 + MLT2B3 LTR ERVL 3 544 -10 3785 138 204 33 chr1 260630968 260631927 -21561737 + L1MCa LINE L1 1179 2301 -4125 3071 133 77 40 chr1 260631925 260632532 -21561132 + L1MC1 LINE L1 5704 6333 0 * 306 250 128 56 chr1 260632541 260632737 -21560927 - L1MC4a LINE L1 -1692 6116 5907 329 251 219 23 chr1 260633738 260633869 -21559795 + MIR SINE MIR 20 169 -39 379 267 109 0 chr1 260634225 260634326 -21559338 - MIR SINE MIR -150 112 1 800 307 41 27 chr1 260634682 260635050 -21558614 - L1MC4a LINE L1 -381 5740 5368 731 187 0 0 chr1 260636162 260636285 -21557379 + FLAM_C SINE Alu 3 125 -8 1456 309 87 55 chr1 260636480 260636555 -21557109 + L1MEd LINE L1 4 75 -2415 1717 78 0 13 chr1 260636555 260636786 -21556878 + AluY SINE Alu 84 311 0 1456 309 87 55 chr1 260636786 260637929 -21555735 + L1MEd LINE L1 75 1380 -1110 2022 142 0 3 chr1 260637929 260638240 -21555424 + AluJb SINE Alu 1 310 -2 1456 309 87 55 chr1 260638240 260638622 -21555042 + L1MEd LINE L1 1380 1748 -742 21 0 0 0 chr1 260638802 260638823 -21554841 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr1 260638844 260638871 -21554793 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr1 260638950 260638972 -21554692 + AT_rich Low_complexity Low_complexity 1 22 0 4356 149 66 5 chr1 260638972 260639778 -21553886 - L1MB3 LINE L1 -2 6181 5327 1245 130 126 36 chr1 260639778 260640025 -21553639 + AluSx SINE Alu 29 297 -15 734 184 46 11 chr1 260640186 260640360 -21553304 - L1MB3 LINE L1 -1001 5145 4966 307 301 76 35 chr1 260640724 260641013 -21552651 + L1MEd LINE L1 2161 2461 -3668 444 339 89 18 chr1 260641085 260641466 -21552198 + L1MEd LINE L1 2548 2955 -3174 321 300 17 39 chr1 260641889 260642069 -21551595 - L1MEc LINE L1 -6185 211 36 2170 99 17 0 chr1 260642120 260642414 -21551250 + AluSx SINE Alu 1 299 -13 872 140 0 37 chr1 260642605 260642741 -21550923 - FLAM_C SINE Alu -2 131 1 856 171 14 0 chr1 260642779 260642925 -21550739 - AluJb SINE Alu -30 282 135 191 163 0 23 chr1 260643335 260643378 -21550286 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 21 0 0 0 chr1 260644353 260644374 -21549290 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 14 14 chr1 260644413 260644482 -21549182 + MIR SINE MIR 86 154 -108 1306 176 9 0 chr1 260644533 260644754 -21548910 + MER58A DNA MER1_type 1 223 -1 26 74 0 0 chr1 260645152 260645206 -21548458 + AT_rich Low_complexity Low_complexity 1 54 0 1354 160 0 60 chr1 260645454 260645704 -21547960 + AluJb SINE Alu 1 235 -77 31 44 0 0 chr1 260645888 260645933 -21547731 + AT_rich Low_complexity Low_complexity 1 45 0 2302 47 40 14 chr1 260646220 260646516 -21547148 - AluY SINE Alu -7 304 1 1005 135 62 0 chr1 260646522 260646700 -21546964 - L1PB4 LINE L1 -3 6153 5965 208 287 119 56 chr1 260647917 260648060 -21545604 + MIR SINE MIR 10 161 -101 1973 109 57 0 chr1 260648347 260648630 -21545034 - AluSc SINE Alu -8 301 3 691 283 95 59 chr1 260649206 260650152 -21543512 + L1M4 LINE L1 3727 4706 -1440 2213 245 144 17 chr1 260650301 260651187 -21542477 + HAL1 LINE L1 1353 2351 -156 290 194 32 0 chr1 260651199 260651261 -21542403 + AluJb SINE Alu 238 301 -1 1455 164 11 34 chr1 260651312 260651611 -21542053 - AluJb SINE Alu 0 312 36 328 333 89 7 chr1 260652028 260652163 -21541501 - L1MEc LINE L1 -6013 1109 964 952 289 106 32 chr1 260652202 260652826 -21540838 - L1MEc LINE L1 -4414 2708 2039 2448 60 0 0 chr1 260653050 260653351 -21540313 - AluY SINE Alu -10 301 1 22 35 0 0 chr1 260654360 260654389 -21539275 + AT_rich Low_complexity Low_complexity 1 29 0 459 233 72 134 chr1 260654713 260654881 -21538783 + MER112 DNA MER1_type 4 152 -108 1144 218 81 25 chr1 260654881 260655165 -21538499 + AluJo SINE Alu 1 300 -2 459 233 72 134 chr1 260655165 260655258 -21538406 + MER112 DNA MER1_type 152 249 -11 2254 69 24 3 chr1 260655472 260655760 -21537904 - AluY SINE Alu -17 294 1 21 0 0 0 chr1 260655819 260655840 -21537824 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr1 260656545 260656583 -21537081 + AT_rich Low_complexity Low_complexity 1 38 0 1953 160 0 0 chr1 260656861 260657168 -21536496 + AluSx SINE Alu 1 307 -5 32 0 0 0 chr1 260657550 260657582 -21536082 + AT_rich Low_complexity Low_complexity 1 32 0 308 249 182 22 chr1 260657621 260657846 -21535818 - L1M4 LINE L1 -1070 5076 4816 466 204 31 0 chr1 260657891 260657989 -21535675 + MER94 DNA DNA 34 134 0 1079 173 26 21 chr1 260658293 260658484 -21535180 + AluJo SINE Alu 91 282 -30 231 146 0 0 chr1 260658508 260658549 -21535115 + (CA)n Simple_repeat Simple_repeat 1 41 0 349 286 68 53 chr1 260658975 260659181 -21534483 + HAL1 LINE L1 26 234 -2273 630 278 88 45 chr1 260659284 260659748 -21533916 + HAL1 LINE L1 2020 2503 -4 314 325 153 22 chr1 260661142 260661370 -21532294 + L2 LINE L2 1851 2108 -1206 454 196 0 21 chr1 260661445 260661542 -21532122 - L1MEc LINE L1 -6227 196 102 * 1671 242 119 35 chr1 260661524 260661741 -21531923 - L1ME LINE L1 -4369 1711 1514 2034 135 3 3 chr1 260661741 260662044 -21531620 - AluSx SINE Alu -9 303 1 1671 242 119 35 chr1 260662044 260662317 -21531347 - L1ME LINE L1 -4566 1514 1265 2442 57 0 7 chr1 260662317 260662616 -21531048 - AluY SINE Alu -14 297 1 1671 242 119 35 chr1 260662616 260663387 -21530277 - L1ME LINE L1 -4815 1265 355 517 299 43 69 chr1 260663392 260663696 -21529968 - L1ME LINE L1 -5757 313 18 1754 246 87 43 chr1 260663809 260664338 -21529326 + MLT1G1 LTR MaLR 13 564 -31 626 319 114 23 chr1 260664392 260664734 -21528930 + LTR16A LTR ERVL 78 450 0 1490 183 39 21 chr1 260665160 260665445 -21528219 + AluJb SINE Alu 2 291 -21 512 216 24 23 chr1 260666462 260666593 -21527071 + L1MD3 LINE L1 6244 6359 0 987 220 88 126 chr1 260667137 260667734 -21525930 + MER77 LTR ERV1 38 598 -7 348 185 0 0 chr1 260667920 260667974 -21525690 + Tigger5 DNA MER2_type 2 55 -2268 348 186 29 14 chr1 260667943 260668013 -21525651 + Tigger5 DNA MER2_type 2251 2321 -2 361 301 60 17 chr1 260669573 260669775 -21523889 + MIR SINE MIR 17 226 -36 364 102 37 6 chr1 260669779 260669852 -21523812 + Alu SINE Alu 1 53 -247 1166 95 0 30 chr1 260669854 260670022 -21523642 + AluSg/x SINE Alu 136 298 -14 251 256 61 12 chr1 260671126 260671208 -21522456 - MIR SINE MIR -54 208 123 1987 119 69 28 chr1 260671932 260672292 -21521372 - THE1C LTR MaLR 0 375 1 209 200 0 18 chr1 260672339 260672386 -21521278 - L2 LINE L2 -12 3301 3215 715 229 26 0 chr1 260672577 260672730 -21520934 + MER58B DNA MER1_type 182 338 -3 22 0 0 0 chr1 260672829 260672851 -21520813 + AT_rich Low_complexity Low_complexity 1 22 0 311 155 10 41 chr1 260672905 260673002 -21520662 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 253 252 63 55 chr1 260673142 260673269 -21520395 + L1MC4a LINE L1 5512 5639 -482 315 242 71 0 chr1 260673389 260673488 -21520176 + L1MC4a LINE L1 5780 5885 -1923 481 288 78 13 chr1 260673710 260673863 -21519801 + MIR SINE MIR 15 177 -85 1865 183 58 58 chr1 260673865 260674379 -21519285 - L1MB4 LINE L1 0 6180 5667 181 282 154 0 chr1 260674394 260674472 -21519192 + MIR SINE MIR 169 258 -4 214 318 63 0 chr1 260675028 260675091 -21518573 - L2 LINE L2 -1 3271 3205 427 333 81 14 chr1 260675703 260676059 -21517605 - L1MB4 LINE L1 -525 5649 5272 1755 164 21 7 chr1 260676146 260676433 -21517231 - AluJo SINE Alu -21 291 1 195 42 0 0 chr1 260676662 260676686 -21516978 + (CA)n Simple_repeat Simple_repeat 1 24 0 296 256 11 11 chr1 260676772 260676862 -21516802 - L1MC4a LINE L1 -1926 5882 5793 2061 92 4 0 chr1 260677001 260677272 -21516392 - AluY SINE Alu -39 272 1 36 53 0 13 chr1 260677597 260677630 -21516034 + AT_rich Low_complexity Low_complexity 1 33 -41 1482 174 17 38 chr1 260677630 260677918 -21515746 + AluJo SINE Alu 1 282 -30 36 53 0 13 chr1 260677918 260677959 -21515705 + AT_rich Low_complexity Low_complexity 33 74 0 552 155 14 140 chr1 260677972 260678179 -21515485 - L1MC5 LINE L1 -50 7911 7731 848 156 19 19 chr1 260678275 260678429 -21515235 + MER20 DNA MER1_type 66 219 0 310 333 50 57 chr1 260679323 260679482 -21514182 + L1ME4a LINE L1 5474 5631 -2177 2032 114 0 33 chr1 260679967 260680274 -21513390 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr1 260680274 260680297 -21513367 + (TA)n Simple_repeat Simple_repeat 2 24 0 236 211 58 0 chr1 260680702 260680754 -21512910 - MIR SINE MIR -110 152 98 1870 164 3 0 chr1 260680757 260681049 -21512615 + AluJb SINE Alu 1 293 -19 634 252 0 0 chr1 260681767 260681910 -21511754 - L1M4 LINE L1 -2304 3842 3700 3148 31 0 5 chr1 260681924 260682309 -21511355 - L1PA4 LINE L1 -3 6152 5770 16357 31 6 0 chr1 260682355 260685083 -21508581 - L1PA2 LINE L1 0 6155 3416 1534 17 0 0 chr1 260685085 260685261 -21508403 - L1PA4 LINE L1 -375 5780 5605 818 184 7 20 chr1 260685351 260685503 -21508161 - L1MDa LINE L1 -6370 170 21 539 299 26 0 chr1 260685788 260685942 -21507722 + LTR16A LTR ERVL 97 254 -196 3194 144 45 42 chr1 260686253 260686904 -21506760 + L1PB4 LINE L1 5504 6156 0 239 245 113 28 chr1 260687085 260687191 -21506473 + L1ME4a LINE L1 5964 6078 -43 21 36 0 0 chr1 260688066 260688094 -21505570 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr1 260688214 260688250 -21505414 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr1 260689229 260689250 -21504414 + AT_rich Low_complexity Low_complexity 1 21 0 239 150 0 0 chr1 260689901 260689941 -21503723 + MER46C DNA MER2_type 1 40 -298 527 280 64 6 chr1 260690062 260690219 -21503445 + MIR SINE MIR 47 212 -50 213 244 0 0 chr1 260690360 260690405 -21503259 + MIR SINE MIR 218 262 0 205 176 0 0 chr1 260690402 260690436 -21503228 - MIR SINE MIR -28 234 201 * 360 293 93 42 chr1 260690651 260690910 -21502754 + L1ME4a LINE L1 5695 5966 -155 1100 261 176 17 chr1 260691858 260691920 -21501744 + L2 LINE L2 2533 2584 -729 2201 106 3 7 chr1 260691920 260692221 -21501443 + AluSx SINE Alu 13 312 0 1100 261 176 17 chr1 260692221 260692830 -21500834 + L2 LINE L2 2584 3311 -2 707 306 41 8 chr1 260693157 260693399 -21500265 - MIR SINE MIR 0 262 13 317 305 55 30 chr1 260693595 260693698 -21499966 + L1ME3 LINE L1 5123 5233 -913 315 0 0 0 chr1 260693698 260693733 -21499931 + (CA)n Simple_repeat Simple_repeat 1 35 0 317 305 55 30 chr1 260693733 260693793 -21499871 + L1ME3 LINE L1 5233 5290 -856 1694 244 101 37 chr1 260693865 260694538 -21499126 + L1ME3 LINE L1 5381 6096 -66 6992 172 53 35 chr1 260694552 260695236 -21498428 + L1MB4 LINE L1 17 687 -6878 2427 96 0 3 chr1 260695236 260695549 -21498115 - AluSx SINE Alu 0 312 1 6992 172 53 35 chr1 260695549 260696601 -21497063 + L1MB4 LINE L1 687 1875 -5690 947 181 0 7 chr1 260698283 260698438 -21495226 + FRAM SINE Alu 1 146 -30 1287 187 17 17 chr1 260698453 260698752 -21494912 + L1MB4 LINE L1 5778 6076 -1489 * 4321 156 31 68 chr1 260698751 260698925 -21494739 + L1MB4 LINE L1 6608 6787 -812 2669 52 9 9 chr1 260698925 260699273 -21494391 + L1PA8 LINE L1 5814 6161 -11 4321 156 31 68 chr1 260699273 260699729 -21493935 + L1MB4 LINE L1 6787 7208 -391 435 19 0 0 chr1 260699729 260699781 -21493883 + (CA)n Simple_repeat Simple_repeat 2 53 0 4321 156 31 68 chr1 260699781 260700154 -21493510 + L1MB4 LINE L1 7208 7593 -6 380 133 67 0 chr1 260700176 260700251 -21493413 + L1MB7 LINE L1 6104 6183 -1 2151 121 0 13 chr1 260700265 260700570 -21493094 + AluSx SINE Alu 2 302 -10 1723 185 3 16 chr1 260700686 260700999 -21492665 + AluJo SINE Alu 1 309 -3 306 148 0 0 chr1 260702649 260702703 -21490961 + (TA)n Simple_repeat Simple_repeat 1 54 0 203 346 0 0 chr1 260703979 260704031 -21489633 - L2 LINE L2 -33 3239 3188 3883 120 29 18 chr1 260704035 260704289 -21489375 + MER39B LTR ERV1 1 251 -402 1480 177 52 49 chr1 260704289 260704577 -21489087 + AluJb SINE Alu 2 290 -22 1901 127 40 7 chr1 260704578 260704878 -21488786 + AluSx SINE Alu 1 310 -2 3883 120 29 18 chr1 260704878 260705244 -21488420 + MER39B LTR ERV1 250 630 -23 239 286 176 0 chr1 260705795 260705886 -21487778 - L2 LINE L2 -608 2706 2600 1466 164 182 62 chr1 260706058 260706431 -21487233 + MER47B DNA MER2_type 1 418 0 1148 130 16 5 chr1 260706576 260706760 -21486904 - AluSp SINE Alu -9 304 119 3841 97 41 60 chr1 260706869 260707112 -21486552 + L1M1 LINE L1 1960 2206 -5359 2089 125 3 0 chr1 260707112 260707401 -21486263 + AluSx SINE Alu 1 290 -22 1973 119 28 18 chr1 260707409 260707694 -21485970 + AluSx SINE Alu 1 288 -24 3841 97 41 60 chr1 260707694 260707796 -21485868 + L1M1 LINE L1 2213 2315 -5250 2130 124 10 0 chr1 260707796 260708095 -21485569 + AluSx SINE Alu 1 302 -10 3841 97 41 60 chr1 260708095 260708422 -21485242 + L1M1 LINE L1 2315 2629 -4936 1879 160 3 30 chr1 260708420 260708788 -21484876 + L1MA2 LINE L1 4113 4470 -1676 * 4785 140 13 25 chr1 260708950 260710023 -21483641 + L1MA2 LINE L1 4463 5523 -743 926 112 46 0 chr1 260710020 260710172 -21483492 + L1MA2 LINE L1 6020 6178 -126 * 1131 101 10 72 chr1 260710173 260710382 -21483282 + L1MA2 LINE L1 6109 6304 0 2276 112 0 3 chr1 260710398 260710711 -21482953 + AluSq SINE Alu 1 312 -1 249 33 0 0 chr1 260710817 260710847 -21482817 + (TG)n Simple_repeat Simple_repeat 2 31 0 304 213 90 133 chr1 260710887 260710963 -21482701 + L1MEc LINE L1 1638 1716 -4680 1696 185 0 3 chr1 260710963 260711250 -21482414 + AluJo SINE Alu 1 286 -26 304 213 90 133 chr1 260711250 260711361 -21482303 + L1MEc LINE L1 1716 1817 -4579 513 283 46 4 chr1 260711648 260711888 -21481776 + L1MEc LINE L1 2268 2517 -3698 281 185 62 0 chr1 260711940 260712005 -21481659 + L1MEc LINE L1 2661 2729 -3486 1078 286 71 16 chr1 260712012 260713031 -21480633 + L1MEc LINE L1 2824 4007 -2208 861 263 16 25 chr1 260713054 260713370 -21480294 + L1MEc LINE L1 4364 4676 -1539 463 56 45 11 chr1 260713378 260713467 -21480197 + (GA)n Simple_repeat Simple_repeat 2 93 0 1762 135 4 0 chr1 260713548 260713798 -21479866 + AluSq SINE Alu 37 290 -23 441 84 0 0 chr1 260713798 260713869 -21479795 + (CATA)n Simple_repeat Simple_repeat 2 72 0 1074 233 53 19 chr1 260914493 260914759 -21278905 - MLT1J LTR MaLR -26 485 211 2431 94 0 0 chr1 260914766 260915075 -21278589 - AluY SINE Alu -2 309 1 1771 93 144 35 chr1 260915075 260915383 -21278281 + MER4A-int LTR ERV1 2891 3253 -3345 4160 71 36 0 chr1 260915383 260915917 -21277747 + MER41A LTR ERV1 1 553 -1 1771 93 144 35 chr1 260915917 260916005 -21277659 + MER4A-int LTR ERV1 3253 3330 -3268 * 17774 74 47 21 chr1 260915991 260916439 -21277225 + MER4A-int LTR ERV1 3912 4347 -2251 2382 93 0 13 chr1 260916439 260916751 -21276913 - AluSx SINE Alu -4 308 1 17774 74 47 21 chr1 260916751 260917678 -21275986 + MER4A-int LTR ERV1 4347 5249 -1349 8542 58 4 7 chr1 260917678 260919515 -21274149 + L1PA6 LINE L1 4317 6151 -3 17774 74 47 21 chr1 260919515 260920758 -21272906 + MER4A-int LTR ERV1 5249 6598 0 268 125 375 14 chr1 260920759 260920831 -21272833 + MER4A LTR ERV1 1 98 -566 788 135 8 121 chr1 260920831 260921068 -21272596 + MER4A LTR ERV1 261 529 -135 373 316 94 17 chr1 260921249 260921483 -21272181 + L1ME4a LINE L1 5347 5598 -523 2502 208 123 34 chr1 260921498 260922235 -21271429 + MER21B LTR ERV1 13 815 -48 2210 108 0 3 chr1 260922415 260922710 -21270954 - AluY SINE Alu -17 294 1 225 264 77 22 chr1 260922725 260922816 -21270848 + L1ME4a LINE L1 5817 5912 -209 301 242 78 78 chr1 260922823 260922918 -21270746 + L1ME4a LINE L1 5969 6063 -58 2264 102 10 0 chr1 260922918 260923223 -21270441 - AluSg SINE Alu -2 308 1 2385 92 7 0 chr1 260923224 260923528 -21270136 - AluSg SINE Alu -4 306 1 301 242 78 78 chr1 260923528 260923583 -21270081 + L1ME4a LINE L1 6062 6121 0 6524 175 58 35 chr1 260924048 260924327 -21269337 + Charlie1a DNA MER1_type 2 273 -2488 2574 18 0 0 chr1 260924327 260924636 -21269028 - AluYb8 SINE Alu 0 323 15 6524 175 58 35 chr1 260924636 260925513 -21268151 + Charlie1a DNA MER1_type 273 1128 -1633 2070 151 0 0 chr1 260925513 260925811 -21267853 - AluSx SINE Alu -14 298 1 1906 201 44 34 chr1 260925812 260926310 -21267354 - MLT1D LTR MaLR 0 505 3 6524 175 58 35 chr1 260926310 260926459 -21267205 + Charlie1a DNA MER1_type 1128 1272 -1489 1480 171 173 42 chr1 260926459 260926863 -21266801 - MSTB2 LTR MaLR 0 457 1 6524 175 58 35 chr1 260926863 260926973 -21266691 + Charlie1a DNA MER1_type 1272 1455 0 785 169 0 15 chr1 260927432 260927562 -21266102 - FLAM_A SINE Alu -5 128 1 447 311 101 6 chr1 260927702 260927939 -21265725 - MIR SINE MIR -4 258 3 777 270 91 8 chr1 260928551 260928852 -21264812 - MLT1J LTR MaLR -14 497 131 1169 249 57 55 chr1 260928978 260929097 -21264567 + L1M4 LINE L1 330 447 -6095 1970 117 0 76 chr1 260929097 260929413 -21264251 - AluSq SINE Alu -21 292 1 1169 249 57 55 chr1 260929413 260929747 -21263917 + L1M4 LINE L1 447 784 -5758 711 182 31 169 chr1 260929902 260930221 -21263443 + L1M4 LINE L1 889 1163 -5379 437 179 193 48 chr1 260930222 260930367 -21263297 + MER21B LTR ERV1 172 337 -526 * 519 209 85 0 chr1 260930356 260930485 -21263179 + MER21B LTR ERV1 670 809 -54 878 229 98 37 chr1 260930489 260930641 -21263023 - L1 LINE L1 -2509 3637 3496 1939 87 21 93 chr1 260930641 260930975 -21262689 - AluYb8 SINE Alu -8 310 1 878 229 98 37 chr1 260930975 260931228 -21262436 - L1 LINE L1 -2650 3496 3207 * 1000 176 18 106 chr1 260931225 260931555 -21262109 - L1M4 LINE L1 -5186 1356 1056 2193 115 0 3 chr1 260931588 260931892 -21261772 + AluSg SINE Alu 1 303 -7 361 115 0 0 chr1 260931932 260931984 -21261680 - L1M4 LINE L1 -5488 1054 1003 1008 169 22 11 chr1 260932024 260932202 -21261462 - MER21B LTR ERV1 -683 180 1 1904 144 0 23 chr1 260932339 260932644 -21261020 + AluSx SINE Alu 5 302 -10 4657 155 32 33 chr1 260932904 260933668 -21259996 + L1MB5 LINE L1 4833 5598 -576 2051 129 10 3 chr1 260933668 260933963 -21259701 + AluSx SINE Alu 1 297 -15 4657 155 32 33 chr1 260933963 260934537 -21259127 + L1MB5 LINE L1 5598 6171 -3 3971 219 39 80 chr1 260934652 260935344 -21258320 - MLT1D-int LTR MaLR -212 1159 531 2181 108 0 29 chr1 260935344 260935659 -21258005 - AluY SINE Alu -5 306 1 3971 219 39 80 chr1 260935659 260936122 -21257542 - MLT1D-int LTR MaLR -840 531 51 591 133 48 29 chr1 260936122 260936227 -21257437 - FLAM_A SINE Alu -15 127 21 251 26 26 26 chr1 260936228 260936266 -21257398 - MLT1D-int LTR MaLR -1320 51 14 * 402 123 0 0 chr1 260936258 260936315 -21257349 - MLT1D-int LTR MaLR -1312 59 3 997 192 62 10 chr1 260936317 260936510 -21257154 - MLT1D LTR MaLR 0 505 303 740 84 0 8 chr1 260936515 260936634 -21257030 + (TTCC)n Simple_repeat Simple_repeat 4 121 0 2253 108 7 0 chr1 260936637 260936932 -21256732 - AluSq SINE Alu -16 297 1 2189 105 7 0 chr1 260936932 260937218 -21256446 - AluSx SINE Alu -3 309 22 4148 238 67 21 chr1 260937228 260938523 -21255141 + L1ME2 LINE L1 2772 4126 -2020 2256 84 3 13 chr1 260938551 260938850 -21254814 + AluSc SINE Alu 1 296 -13 530 259 180 16 chr1 260938856 260939111 -21254553 + L1ME2 LINE L1 4834 5130 -1016 622 152 185 33 chr1 260939113 260939128 -21254536 + AluJo SINE Alu 121 132 -180 1919 147 3 26 chr1 260939128 260939441 -21254223 + AluSq SINE Alu 1 306 -7 622 152 185 33 chr1 260939441 260939576 -21254088 + AluJo SINE Alu 132 294 -18 632 190 15 0 chr1 260939578 260939715 -21253949 + (TATATG)n Simple_repeat Simple_repeat 6 144 0 342 281 0 0 chr1 260939716 260939805 -21253859 + L1MC4 LINE L1 6615 6703 -1339 1012 220 37 37 chr1 260939805 260940073 -21253591 + L1ME2 LINE L1 5881 6148 -16 22 35 0 0 chr1 260940235 260940264 -21253400 + AT_rich Low_complexity Low_complexity 1 29 0 2209 98 44 3 chr1 260940346 260940641 -21253023 + AluSq SINE Alu 1 307 -6 1469 132 83 73 chr1 260940996 260941284 -21252380 - AluJo SINE Alu -21 291 1 1695 150 0 0 chr1 260941702 260941955 -21251709 + AluSp SINE Alu 1 253 -60 1641 148 68 0 chr1 260942056 260942319 -21251345 - AluJb SINE Alu -31 281 1 2029 107 76 0 chr1 260942854 260943143 -21250521 + AluSx SINE Alu 1 311 -1 4356 185 26 16 chr1 260943633 260944486 -21249178 - MER6 DNA MER2_type -2 863 3 1982 190 16 37 chr1 260944634 260945066 -21248598 - L1MB5 LINE L1 -11 6163 5741 822 241 41 87 chr1 260946000 260946213 -21247451 - MLT1J1 LTR MaLR -3 443 259 2266 122 0 0 chr1 260946213 260946524 -21247140 + AluSx SINE Alu 1 311 -1 822 241 41 87 chr1 260946524 260946745 -21246919 - MLT1J1 LTR MaLR -187 259 29 237 83 0 0 chr1 260947200 260947236 -21246428 + (CA)n Simple_repeat Simple_repeat 2 37 0 2498 48 3 0 chr1 260947548 260947840 -21245824 - AluY SINE Alu -16 295 3 378 245 66 9 chr1 260948830 260948936 -21244728 + MIR SINE MIR 30 141 -121 1919 161 0 25 chr1 260948957 260949274 -21244390 + AluJo SINE Alu 1 309 -3 216 97 0 0 chr1 260949916 260949947 -21243717 + (A)n Simple_repeat Simple_repeat 1 31 0 338 269 146 58 chr1 260949986 260950246 -21243418 + MLT1K LTR MaLR 209 491 -97 579 246 137 6 chr1 260950280 260950463 -21243201 + MER20B DNA MER1_type 18 224 -559 2152 192 49 20 chr1 260950495 260950984 -21242680 + MLT1D LTR MaLR 3 505 0 1002 247 122 75 chr1 260951385 260951903 -21241761 + MER20B DNA MER1_type 236 777 -6 1697 171 16 26 chr1 260952353 260952663 -21241001 - AluJb SINE Alu -5 307 1 180 373 154 0 chr1 260952678 260952788 -21240876 + L2 LINE L2 3137 3263 -9 240 274 118 0 chr1 260954065 260954167 -21239497 - MIR SINE MIR -82 180 67 1888 164 0 3 chr1 260954483 260954782 -21238882 - AluJb SINE Alu -14 298 1 2139 240 57 34 chr1 260955001 260955564 -21238100 + Zaphod DNA AcHobo 38 613 -3418 846 174 70 25 chr1 260955570 260955771 -21237893 + MER82 DNA MER2_type 7 216 -437 223 207 17 0 chr1 260955771 260955829 -21237835 + (TA)n Simple_repeat Simple_repeat 2 60 0 1093 147 16 0 chr1 260955829 260956020 -21237644 + L1MA6 LINE L1 6107 6300 0 1653 179 3 19 chr1 260956022 260956330 -21237334 + AluJo SINE Alu 1 303 -9 1940 222 32 9 chr1 260956351 260956793 -21236871 + MER82 DNA MER2_type 196 647 -6 1025 173 55 47 chr1 260956799 260956891 -21236773 + Zaphod DNA AcHobo 612 702 -3329 2242 104 0 10 chr1 260956891 260957188 -21236476 - AluY SINE Alu -17 294 1 1025 173 55 47 chr1 260957188 260957442 -21236222 + Zaphod DNA AcHobo 702 964 -3067 2093 105 59 0 chr1 260957442 260957728 -21235936 - AluSp SINE Alu -10 303 1 1025 173 55 47 chr1 260957728 260957744 -21235920 + Zaphod DNA AcHobo 964 978 -3053 1579 210 28 64 chr1 260957787 260958002 -21235662 + Zaphod DNA AcHobo 3582 3803 -228 1440 141 144 11 chr1 260958002 260958272 -21235392 + AluSg1 SINE Alu 1 306 -3 1579 210 28 64 chr1 260958272 260958412 -21235252 + Zaphod DNA AcHobo 3803 3919 -112 2193 123 3 0 chr1 260958412 260958721 -21234943 - AluSx SINE Alu -2 310 1 1579 210 28 64 chr1 260958721 260958831 -21234833 + Zaphod DNA AcHobo 3919 4031 0 1876 121 42 3 chr1 260959476 260959765 -21233899 + AluSx SINE Alu 1 300 -12 421 300 6 35 chr1 260959813 260959983 -21233681 + MIR3 SINE MIR 35 199 -9 301 272 68 0 chr1 260960393 260960496 -21233168 + MIR SINE MIR 149 258 -4 299 275 99 53 chr1 260960477 260960608 -21233056 - L2 LINE L2 -9 3263 3127 * 438 306 83 21 chr1 260960799 260960992 -21232672 + MLT1K LTR MaLR 102 306 -282 349 222 181 53 chr1 260961054 260961088 -21232576 + MLT1K LTR MaLR 396 424 -164 261 0 0 0 chr1 260961088 260961117 -21232547 + (GA)n Simple_repeat Simple_repeat 1 29 0 349 222 181 53 chr1 260961117 260961253 -21232411 + MLT1K LTR MaLR 424 588 0 1631 157 64 15 chr1 260961425 260961717 -21231947 + AluJo SINE Alu 2 306 0 2123 113 7 19 chr1 260961774 260962084 -21231580 + AluSq SINE Alu 1 306 -7 290 286 38 8 chr1 260963034 260963167 -21230497 - L1MEc LINE L1 -6182 214 78 2263 104 0 10 chr1 260963243 260963550 -21230114 + AluSx SINE Alu 1 304 -8 925 239 49 46 chr1 260963566 260963913 -21229751 - HAL1b LINE L1 -555 793 446 1519 187 7 7 chr1 260963960 260964249 -21229415 + AluJb SINE Alu 5 293 -19 2058 117 0 10 chr1 260964473 260964782 -21228882 - AluSx SINE Alu -6 306 1 876 282 37 18 chr1 260964857 260965183 -21228481 - L1ME3A LINE L1 -299 5871 5540 829 270 36 57 chr1 260965216 260965362 -21228302 - HAL1b LINE L1 -890 458 311 1818 183 0 0 chr1 260965362 260965674 -21227990 - AluJb SINE Alu 0 312 1 829 270 36 57 chr1 260965674 260965916 -21227748 - HAL1b LINE L1 -1037 311 78 2090 136 0 0 chr1 260966909 260967219 -21226445 - AluSx SINE Alu -2 310 1 2286 135 88 18 chr1 260967273 260967673 -21225991 - MSTA LTR MaLR 0 428 1 563 264 35 29 chr1 260967698 260967872 -21225792 + L2 LINE L2 3139 3313 0 1126 205 31 28 chr1 260969099 260969387 -21224277 + AluSx SINE Alu 10 298 -14 964 213 6 0 chr1 260969390 260969554 -21224110 + AluJo/FRAM SINE Alu 137 301 -1 188 372 78 0 chr1 260969824 260969953 -21223711 - MIR SINE MIR -1 261 123 959 224 44 135 chr1 260970003 260970499 -21223165 + LTR16A1 LTR ERVL 2 452 -5 339 274 97 48 chr1 260970511 260970635 -21223029 + MIR SINE MIR 22 151 -111 451 193 18 9 chr1 260970765 260970879 -21222785 - MER112 DNA MER1_type -33 227 113 227 268 80 9 chr1 260971374 260971486 -21222178 + L1ME4a LINE L1 5943 6062 -59 527 212 24 71 chr1 260971586 260971698 -21221966 - MIR SINE MIR -48 214 111 2241 87 0 10 chr1 260971698 260971996 -21221668 + AluSp SINE Alu 1 295 -18 527 212 24 71 chr1 260971996 260972053 -21221611 - MIR SINE MIR -151 111 53 473 184 12 143 chr1 260972257 260972319 -21221345 + L2 LINE L2 3165 3233 -80 650 197 51 0 chr1 260972319 260972436 -21221228 + FLAM_A SINE Alu 1 123 -10 473 184 12 143 chr1 260972436 260972541 -21221123 + L2 LINE L2 3233 3310 -3 764 243 33 49 chr1 260972950 260973193 -21220471 - MIR SINE MIR -9 253 15 182 204 0 0 chr1 260973243 260973287 -21220377 + L2 LINE L2 3269 3312 -1 205 182 0 0 chr1 260973289 260973322 -21220342 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 2349 89 0 3 chr1 260973429 260973742 -21219922 - AluSq SINE Alu -1 312 1 209 319 43 0 chr1 260973959 260974028 -21219636 - MIR3 SINE MIR -8 200 129 2036 116 10 7 chr1 260974083 260974386 -21219278 - AluSx SINE Alu -8 304 1 819 175 0 0 chr1 260974393 260974519 -21219145 - FLAM_A SINE Alu -7 126 1 552 250 0 78 chr1 260974575 260974755 -21218909 + MIR SINE MIR 97 262 0 15612 111 17 19 chr1 260974934 260975039 -21218625 - Tigger1 DNA MER2_type 0 2418 2314 2148 92 17 0 chr1 260975039 260975332 -21218332 + AluSx SINE Alu 1 298 -14 15612 111 17 19 chr1 260975332 260976399 -21217265 - Tigger1 DNA MER2_type -104 2314 1247 2226 78 3 13 chr1 260976399 260976706 -21216958 + AluY SINE Alu 1 304 -7 15612 111 17 19 chr1 260976706 260977862 -21215802 - Tigger1 DNA MER2_type -1171 1247 92 1445 131 0 0 chr1 260977882 260978103 -21215561 + Tigger1 DNA MER2_type 749 969 -1449 2219 87 0 0 chr1 260978103 260978389 -21215275 + AluSx SINE Alu 11 296 -16 383 173 27 13 chr1 260978389 260978458 -21215206 - Tigger1 DNA MER2_type -2319 99 30 252 111 0 0 chr1 260978503 260978548 -21215116 + (GA)n Simple_repeat Simple_repeat 1 45 0 988 279 116 11 chr1 260978562 260979154 -21214510 + L2 LINE L2 2491 3190 -123 251 93 23 0 chr1 260979154 260979197 -21214467 + (CA)n Simple_repeat Simple_repeat 1 44 0 988 279 116 11 chr1 260979197 260979331 -21214333 + L2 LINE L2 3190 3309 -4 2018 121 0 7 chr1 260979361 260979658 -21214006 - AluSx SINE Alu -15 297 3 2169 128 0 0 chr1 260979694 260980006 -21213658 + AluSx SINE Alu 1 312 0 464 293 182 40 chr1 260980115 260980511 -21213153 + LTR67 LTR ERVL 99 550 -7 1712 162 0 4 chr1 260981205 260981483 -21212181 + AluJo SINE Alu 1 277 -35 27 0 0 0 chr1 260981483 260981510 -21212154 + AT_rich Low_complexity Low_complexity 1 27 0 622 266 40 6 chr1 260981889 260982066 -21211598 - MIR SINE MIR -31 231 49 2023 131 7 0 chr1 260982072 260982378 -21211286 + AluSx SINE Alu 1 308 -4 2090 98 0 3 chr1 260982455 260982751 -21210913 + AluSc SINE Alu 1 295 -14 1206 225 223 46 chr1 260982972 260983469 -21210195 + MLT1E LTR MaLR 7 591 -2 430 311 109 33 chr1 260983546 260983968 -21209696 + L2 LINE L2 2606 3050 -222 24 32 0 0 chr1 260984045 260984076 -21209588 + AT_rich Low_complexity Low_complexity 1 31 0 2165 81 3 0 chr1 260984775 260985105 -21208559 - AluSx SINE Alu 0 331 1 1636 137 8 0 chr1 260985262 260985543 -21208121 - AluJo SINE Alu 0 315 33 194 242 0 0 chr1 260986843 260986876 -21206788 - L2 LINE L2 -36 3236 3204 2301 98 0 0 chr1 260986943 260987248 -21206416 + AluSq SINE Alu 1 305 -8 2191 60 0 11 chr1 260987253 260987534 -21206130 + AluY SINE Alu 21 298 -13 1447 203 35 54 chr1 260987534 260988082 -21205582 - L1ME1 LINE L1 -4 6162 5166 1049 165 0 0 chr1 260988089 260988265 -21205399 - AluJb SINE Alu -3 309 134 2096 104 0 0 chr1 260988265 260988552 -21205112 - AluSx SINE Alu -14 298 12 306 170 0 0 chr1 260988555 260988602 -21205062 - Alu SINE Alu -252 47 1 912 139 0 7 chr1 260988605 260988749 -21204915 - FLAM_C SINE Alu 0 143 1 4293 203 61 29 chr1 260988749 260989592 -21204072 - L1ME1 LINE L1 -970 5176 4362 2096 128 9 88 chr1 260989592 260989822 -21203842 + MLT1B LTR MaLR 1 185 -205 2330 84 0 0 chr1 260989822 260990121 -21203543 + AluSg SINE Alu 1 299 -11 2096 128 9 88 chr1 260990121 260990313 -21203351 + MLT1B LTR MaLR 185 390 0 4293 203 61 29 chr1 260990313 260990525 -21203139 - L1ME1 LINE L1 -1784 4362 4077 2256 107 0 0 chr1 260990525 260990834 -21202830 - AluSx SINE Alu -3 309 1 4293 203 61 29 chr1 260990834 260990952 -21202712 - L1ME1 LINE L1 -2069 4077 3964 943 263 24 20 chr1 260991089 260991336 -21202328 + MIR SINE MIR 1 248 -14 186 272 99 25 chr1 260991473 260991554 -21202110 - L3 LINE CR1 -11 1566 1480 2044 92 0 11 chr1 260991943 260992226 -21201438 - AluSg SINE Alu -4 306 27 189 107 0 0 chr1 260993333 260993361 -21200303 + (A)n Simple_repeat Simple_repeat 1 28 0 204 203 14 72 chr1 260993398 260993467 -21200197 + CT-rich Low_complexity Low_complexity 1 65 0 180 111 0 0 chr1 260993474 260993501 -21200163 + (T)n Simple_repeat Simple_repeat 1 27 0 204 179 0 0 chr1 260995623 260995662 -21198002 + (CAG)n Simple_repeat Simple_repeat 2 40 0 2202 104 3 0 chr1 261000296 261000605 -21193059 + AluSx SINE Alu 2 311 -1 225 265 0 0 chr1 261000696 261000764 -21192900 + T-rich Low_complexity Low_complexity 1 68 0 235 258 93 21 chr1 261001194 261001291 -21192373 + MIR3 SINE MIR 104 207 -1 2127 110 0 49 chr1 261002938 261003264 -21190400 + AluSx SINE Alu 1 310 -2 212 284 0 60 chr1 261003306 261003328 -21190336 - MIR3 SINE MIR -27 181 159 2226 96 0 3 chr1 261003328 261003631 -21190033 - AluSc SINE Alu -7 302 1 212 284 0 60 chr1 261003631 261003675 -21189989 - MIR3 SINE MIR -49 159 119 280 294 59 8 chr1 261004041 261004160 -21189504 + MIR SINE MIR 132 256 -6 1633 116 13 70 chr1 261006154 261006456 -21187208 - AluJo SINE Alu -27 285 1 327 247 22 35 chr1 261006645 261006768 -21186896 + MIR SINE MIR 101 221 -41 218 217 17 50 chr1 261007378 261007438 -21186226 - L2 LINE L2 -7 3265 3208 649 244 111 0 chr1 261008165 261008345 -21185319 + MIR SINE MIR 47 246 -16 427 217 82 78 chr1 261008561 261008762 -21184902 + MIR SINE MIR 12 210 -52 2123 119 3 0 chr1 261010720 261011030 -21182634 + AluSq SINE Alu 1 311 -2 2282 74 7 3 chr1 261011038 261011335 -21182329 + AluSq SINE Alu 1 298 -15 381 233 38 136 chr1 261011355 261011454 -21182210 + L3 LINE CR1 793 900 -677 2404 69 3 16 chr1 261011454 261011771 -21181893 - AluSp SINE Alu 0 313 1 1923 118 28 0 chr1 261011775 261012063 -21181601 - AluSg SINE Alu -14 296 1 381 233 38 136 chr1 261012063 261012194 -21181470 + L3 LINE CR1 903 1005 -572 * 442 237 173 37 chr1 261012190 261012411 -21181253 - MIR SINE MIR 0 262 7 1945 119 31 14 chr1 261013546 261013839 -21179825 - AluSx SINE Alu -14 298 1 1488 154 15 59 chr1 261013860 261014197 -21179467 - L1MC/D LINE L1 -492 5750 5429 1392 165 88 42 chr1 261014208 261014493 -21179171 - AluJo SINE Alu -9 303 6 244 172 111 91 chr1 261014498 261014518 -21179146 - L1MC/D LINE L1 -919 5440 5422 2378 86 10 3 chr1 261014518 261014820 -21178844 - AluSg SINE Alu -6 304 1 244 172 111 91 chr1 261014820 261014898 -21178766 - L1MC/D LINE L1 -937 5422 5340 1232 107 53 0 chr1 261016233 261016420 -21177244 + L1PA10 LINE L1 5969 6165 -3 2253 128 0 0 chr1 261016722 261017028 -21176636 + AluSx SINE Alu 1 306 -6 248 284 74 12 chr1 261017595 261017676 -21175988 - L2 LINE L2 -50 3222 3137 316 288 108 22 chr1 261017693 261017793 -21175871 - MIR SINE MIR -111 151 34 949 151 172 0 chr1 261017793 261017979 -21175685 - MER20 DNA MER1_type -1 218 1 316 288 108 22 chr1 261017979 261018017 -21175647 - MIR SINE MIR -228 34 1 930 208 36 11 chr1 261018398 261018743 -21174921 - MLT1I LTR MaLR 0 409 1 341 276 0 7 chr1 261019701 261019853 -21173811 + (TATG)n Simple_repeat Simple_repeat 3 153 0 254 29 29 0 chr1 261021355 261021390 -21172274 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 348 24 0 0 chr1 261021389 261021430 -21172234 + (TC)n Simple_repeat Simple_repeat 1 41 0 735 230 184 11 chr1 261021791 261022247 -21171417 + MER45 DNA AcHobo 3 628 -325 902 179 6 6 chr1 261022333 261022501 -21171163 + MER45 DNA AcHobo 1412 1579 -2 526 182 0 0 chr1 261023575 261023663 -21170001 + MER53 DNA DNA 102 189 0 762 278 130 27 chr1 261023987 261024426 -21169238 - MLT1L LTR MaLR -6 609 126 2287 84 3 3 chr1 261025336 261025651 -21168013 + AluSq SINE Alu 1 315 0 185 307 105 61 chr1 261026149 261026263 -21167401 + MIR3 SINE MIR 75 193 -15 191 245 20 0 chr1 261026397 261026446 -21167218 + MIR3 SINE MIR 153 202 -6 2432 83 3 0 chr1 261027285 261027585 -21166079 - AluSp SINE Alu -12 301 1 186 345 69 0 chr1 261028981 261029068 -21164596 - MIR SINE MIR -114 148 56 2213 106 0 7 chr1 261030418 261030719 -21162945 - AluSx SINE Alu -13 299 1 2743 39 0 0 chr1 261031201 261031510 -21162154 - AluY SINE Alu -2 309 1 295 295 114 9 chr1 261032087 261032192 -21161472 + MIR SINE MIR 2 117 -145 3195 78 2 48 chr1 261032281 261032337 -21161327 + MLT2A1 LTR ERVL 3 60 -384 2283 98 10 3 chr1 261032337 261032644 -21161020 - AluSc SINE Alu 0 309 1 3195 78 2 48 chr1 261032644 261033048 -21160616 + MLT2A1 LTR ERVL 60 442 -2 269 48 48 0 chr1 261033065 261033107 -21160557 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 801 244 26 49 chr1 261033188 261033454 -21160210 - MIR SINE MIR -1 261 2 373 294 28 9 chr1 261034582 261034691 -21158973 - L2 LINE L2 -2 3311 3201 306 290 167 25 chr1 261035506 261035668 -21157996 - MIR SINE MIR -8 254 70 214 278 67 22 chr1 261035962 261036052 -21157612 + L3 LINE CR1 1473 1566 -11 210 71 0 0 chr1 261036486 261036514 -21157150 + (CA)n Simple_repeat Simple_repeat 2 29 0 203 189 0 0 chr1 261036515 261036552 -21157112 + (TA)n Simple_repeat Simple_repeat 1 37 0 730 218 30 18 chr1 261036557 261036722 -21156942 - MIR SINE MIR -65 197 31 209 382 0 0 chr1 261036859 261036948 -21156716 + C-rich Low_complexity Low_complexity 2 90 0 499 289 115 45 chr1 261037282 261037569 -21156095 - L3 LINE CR1 -562 1015 709 2174 108 0 0 chr1 261037569 261037881 -21155783 - AluSx SINE Alu 0 316 5 341 234 65 123 chr1 261037899 261037998 -21155666 + MIR SINE MIR 20 112 -150 1141 159 63 5 chr1 261037998 261038205 -21155459 + MER20 DNA MER1_type 1 219 0 341 234 65 123 chr1 261038205 261038295 -21155369 + MIR SINE MIR 112 206 -56 688 307 172 24 chr1 261038405 261038858 -21154806 - L3 LINE CR1 -916 661 142 610 236 31 58 chr1 261039120 261039345 -21154319 - MER112 DNA MER1_type -6 254 36 307 325 219 0 chr1 261040602 261040716 -21152948 + MIR SINE MIR 2 140 -122 2795 132 26 2 chr1 261041588 261042044 -21151620 - L1MB3 LINE L1 0 6183 5717 265 328 17 17 chr1 261042366 261042485 -21151179 + MIR SINE MIR 16 134 -128 4665 78 16 2 chr1 261042580 261043198 -21150466 + L1PA13 LINE L1 5518 6144 -19 429 95 0 0 chr1 261043200 261043263 -21150401 + (CA)n Simple_repeat Simple_repeat 2 64 0 192 264 54 108 chr1 261043312 261043441 -21150223 + L2 LINE L2 3141 3262 -10 306 251 29 111 chr1 261043469 261043640 -21150024 - MARNA DNA Mariner -403 183 27 239 235 136 25 chr1 261044504 261044585 -21149079 + L2 LINE L2 3160 3249 -23 392 311 43 48 chr1 261049294 261049503 -21144161 + MIR SINE MIR 4 211 -51 450 303 87 38 chr1 261050203 261050436 -21143228 - MIR SINE MIR 0 262 3 634 194 39 50 chr1 261050556 261050736 -21142928 + MER5B DNA MER1_type 1 178 0 187 374 0 22 chr1 261051369 261051460 -21142204 + MIR SINE MIR 168 256 -6 228 182 121 15 chr1 261053051 261053117 -21140547 - L1ME4a LINE L1 -25 6096 6024 293 339 138 0 chr1 261053311 261053441 -21140223 - MIR3 SINE MIR -7 201 54 563 200 315 15 chr1 261054167 261054367 -21139297 - MIR SINE MIR 0 262 3 441 259 7 82 chr1 261056215 261056362 -21137302 - MIR SINE MIR -50 212 77 547 287 5 67 chr1 261057103 261057298 -21136366 - MIR SINE MIR -78 184 2 225 0 0 0 chr1 261057680 261057705 -21135959 + (T)n Simple_repeat Simple_repeat 1 25 0 1147 66 0 7 chr1 261058199 261058336 -21135328 + AluSq/x SINE Alu 1 136 -176 2100 115 11 0 chr1 261058336 261058622 -21135042 + AluSg SINE Alu 1 289 -21 2087 117 27 7 chr1 261059444 261059743 -21133921 - AluJb SINE Alu -7 305 1 1191 218 48 53 chr1 261060271 261060689 -21132975 - LTR56 LTR ERV1 -29 416 1 1165 263 120 40 chr1 261060713 261061383 -21132281 + L2 LINE L2 2587 3313 0 188 267 158 50 chr1 261061401 261061502 -21132162 - L2 LINE L2 -4 3268 3157 588 304 61 29 chr1 261062238 261062613 -21131051 - L1ME4a LINE L1 -245 5876 5490 261 0 0 0 chr1 261062628 261062657 -21131007 + (T)n Simple_repeat Simple_repeat 1 29 0 1941 145 3 3 chr1 261062659 261062969 -21130695 + AluSx SINE Alu 1 310 -2 353 234 25 91 chr1 261063383 261063420 -21130244 - MER97b DNA MER1_type? 0 1053 1015 2192 54 68 0 chr1 261063420 261063699 -21129965 - AluSq SINE Alu -15 298 1 353 234 25 91 chr1 261063699 261063858 -21129806 - MER97b DNA MER1_type? -38 1015 870 1826 230 78 22 chr1 261064266 261064844 -21128820 - MER97a DNA MER1_type? -277 617 8 255 125 0 0 chr1 261064966 261065006 -21128658 + (CA)n Simple_repeat Simple_repeat 1 40 0 447 324 82 55 chr1 261065507 261066110 -21127554 - L2 LINE L2 -5 3267 2654 277 333 33 53 chr1 261067348 261067498 -21126166 - MIR SINE MIR -46 216 70 353 215 131 0 chr1 261067698 261067805 -21125859 - Charlie8 DNA MER1_type -2260 157 37 1812 127 0 81 chr1 261069001 261069333 -21124331 + AluJb SINE Alu 3 307 -5 180 333 43 0 chr1 261070397 261070466 -21123198 + L3 LINE CR1 306 377 -1200 542 258 137 21 chr1 261071104 261071294 -21122370 - MIR SINE MIR -14 248 37 493 313 136 0 chr1 261071329 261071543 -21122121 + MIR SINE MIR 2 244 -18 349 275 123 7 chr1 261075073 261075211 -21118453 + MIR SINE MIR 79 232 -30 188 359 16 0 chr1 261076690 261076754 -21116910 - L2 LINE L2 -223 3049 2985 578 170 211 0 chr1 261077472 261077619 -21116045 + MER45A DNA AcHobo 1 178 0 589 167 13 31 chr1 261077697 261077927 -21115737 + CT-rich Low_complexity Low_complexity 1 225 0 258 238 75 12 chr1 261079626 261079706 -21113958 + MIR SINE MIR 86 170 -92 217 306 171 36 chr1 261081447 261081558 -21112106 - MIR SINE MIR -63 145 20 196 28 83 0 chr1 261082970 261083006 -21110658 + T-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chr1 261083022 261083046 -21110618 + AT_rich Low_complexity Low_complexity 1 24 0 664 226 0 15 chr1 261083222 261083553 -21110111 + (CA)n Simple_repeat Simple_repeat 1 325 0 201 246 0 16 chr1 261084392 261084453 -21109211 + CT-rich Low_complexity Low_complexity 2 61 0 261 327 58 0 chr1 261084544 261084648 -21109016 - L2 LINE L2 -20 3293 3184 211 365 48 19 chr1 261085216 261085320 -21108344 - MIR SINE MIR -74 134 28 265 318 8 23 chr1 261088922 261089051 -21104613 + (TG)n Simple_repeat Simple_repeat 1 127 0 807 106 14 71 chr1 261090365 261090506 -21103158 + FLAM_C SINE Alu 1 133 0 2222 123 0 0 chr1 261093476 261093778 -21099886 + AluSq SINE Alu 2 303 -10 424 259 0 48 chr1 261095798 261095987 -21097677 + (CA)n Simple_repeat Simple_repeat 1 180 0 378 0 0 0 chr1 261096038 261096080 -21097584 + (CA)n Simple_repeat Simple_repeat 1 42 0 1699 188 0 16 chr1 261097318 261097622 -21096042 + AluJo SINE Alu 12 310 -2 267 133 0 0 chr1 261097625 261097670 -21095994 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 203 179 0 0 chr1 261100292 261100331 -21093333 + T-rich Low_complexity Low_complexity 1 39 0 239 187 280 0 chr1 261101509 261101584 -21092080 - MIR SINE MIR -119 143 48 369 270 6 18 chr1 261101930 261102093 -21091571 + CT-rich Low_complexity Low_complexity 2 162 0 1812 168 13 7 chr1 261102112 261102422 -21091242 - AluJb SINE Alu 0 312 1 797 184 47 26 chr1 261103983 261104173 -21089491 + MER58A DNA MER1_type 31 224 0 561 329 48 5 chr1 261104182 261104389 -21089275 - MIR SINE MIR 0 262 47 1986 125 62 49 chr1 261104646 261105015 -21088649 + THE1C LTR MaLR 2 375 0 1182 212 73 18 chr1 261105497 261105827 -21087837 - MLT1A2 LTR MaLR 0 374 27 647 276 9 67 chr1 261106388 261106613 -21087051 - MIR SINE MIR -6 256 45 329 337 158 42 chr1 261106896 261107415 -21086249 - L2 LINE L2 -494 2820 2242 229 296 42 21 chr1 261107528 261107592 -21086072 + L1ME4a LINE L1 5971 6032 -89 1876 112 15 4 chr1 261107592 261107861 -21085803 - AluSq SINE Alu -5 308 37 229 296 42 21 chr1 261107861 261107938 -21085726 + L1ME4a LINE L1 6032 6115 -6 249 265 24 36 chr1 261108071 261108154 -21085510 + L2 LINE L2 3190 3271 -1 346 300 119 50 chr1 261108444 261108491 -21085173 + L1MC4a LINE L1 5548 5590 -2218 2342 75 3 7 chr1 261108491 261108797 -21084867 - AluSq SINE Alu -8 305 1 346 300 119 50 chr1 261108797 261109069 -21084595 + L1MC4a LINE L1 5590 5889 -1919 597 149 28 9 chr1 261109386 261109583 -21084081 + AluJ SINE Alu 44 297 -15 1512 148 19 30 chr1 261109640 261109911 -21083753 - AluJb SINE Alu -44 268 1 279 38 0 0 chr1 261109960 261110003 -21083661 + AluY SINE Alu 28 63 -238 295 183 0 0 chr1 261110432 261110503 -21083161 - L1M4 LINE L1 -2519 3627 3557 1900 174 27 31 chr1 261110510 261110988 -21082676 + L1MB8 LINE L1 4411 4886 -1260 * 3300 152 7 5 chr1 261110987 261111565 -21082099 + L1MB8 LINE L1 5496 6074 -104 3760 243 34 33 chr1 261111594 261112183 -21081481 + L1M4 LINE L1 3331 3918 -2228 2273 89 10 7 chr1 261112183 261112476 -21081188 + AluY SINE Alu 1 294 -17 3760 243 34 33 chr1 261112476 261113127 -21080537 + L1M4 LINE L1 3918 4572 -1574 1183 155 0 0 chr1 261114444 261114631 -21079033 - MLT1B LTR MaLR 0 390 204 212 75 0 25 chr1 261114632 261114672 -21078992 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1703 169 0 22 chr1 261114688 261114961 -21078703 - AluJo SINE Alu -45 267 1 670 149 0 0 chr1 261114998 261115105 -21078559 - FLAM_A SINE Alu -1 141 35 861 156 69 0 chr1 261115109 261115269 -21078395 - MLT1B LTR MaLR -219 171 1 446 294 122 9 chr1 261115915 261116129 -21077535 + MIR SINE MIR 19 256 -6 1658 147 78 9 chr1 261116210 261116529 -21077135 + MER61A LTR ERV1 1 341 -2 2971 184 56 32 chr1 261116532 261117215 -21076449 + MER61A-int LTR ERV1 2 700 -4517 268 57 0 0 chr1 261117260 261117295 -21076369 + MER61A-int LTR ERV1 1328 1362 -3855 6202 136 38 16 chr1 261117299 261117398 -21076266 + MER61A-int LTR ERV1 1631 1726 -3289 2471 67 0 7 chr1 261117398 261117695 -21075969 - AluSq SINE Alu -18 295 1 6202 136 38 16 chr1 261117695 261119153 -21074511 + MER61A-int LTR ERV1 1726 3996 -1019 12845 76 40 26 chr1 261119159 261120777 -21072887 + MER61A-int LTR ERV1 3326 4964 -253 2406 90 6 0 chr1 261120777 261121088 -21072576 - AluSq SINE Alu 0 313 1 12845 76 40 26 chr1 261121088 261121346 -21072318 + MER61A-int LTR ERV1 4964 5217 0 1501 128 158 7 chr1 261121346 261121643 -21072021 + MER61A LTR ERV1 1 342 -1 201 231 0 0 chr1 261122767 261122806 -21070858 - L3 LINE CR1 -483 1094 1056 241 285 182 24 chr1 261122952 261123117 -21070547 - L3 LINE CR1 -746 831 641 1042 241 49 27 chr1 261129665 261129993 -21063671 + MER46C DNA MER2_type 2 336 -2 25 0 0 0 chr1 261130647 261130672 -21062992 + AT_rich Low_complexity Low_complexity 1 25 0 2047 100 4 0 chr1 261131446 261131717 -21061947 + AluY SINE Alu 37 308 -3 304 254 27 18 chr1 261131911 261132021 -21061643 + L1MC5 LINE L1 7806 7916 -45 802 215 12 0 chr1 261132521 261132684 -21060980 - FRAM SINE Alu -1 165 1 476 233 116 20 chr1 261132906 261133052 -21060612 + MER117 DNA MER1_type 4 163 -34 2208 131 28 14 chr1 261133621 261133980 -21059684 + THE1B LTR MaLR 1 364 0 2078 168 109 20 chr1 261136865 261137324 -21056340 - MLT1D LTR MaLR -5 500 1 2242 195 27 82 chr1 261137351 261137881 -21055783 + MLT2B3 LTR ERVL 1 498 -56 2424 90 0 3 chr1 261137881 261138180 -21055484 + AluSq SINE Alu 1 298 -15 2242 195 27 82 chr1 261138180 261138233 -21055431 + MLT2B3 LTR ERVL 498 552 -2 212 286 0 0 chr1 261138788 261138844 -21054820 + L2 LINE L2 3188 3243 -29 285 216 108 114 chr1 261138877 261139053 -21054611 + MER5A DNA MER1_type 13 187 -2 2420 91 0 0 chr1 261139633 261139930 -21053734 - AluSx SINE Alu -11 301 5 528 280 135 19 chr1 261140237 261140444 -21053220 - MIR SINE MIR -12 250 20 2224 122 0 3 chr1 261140489 261140793 -21052871 + AluSx SINE Alu 1 303 -9 269 232 0 0 chr1 261141034 261141090 -21052574 - MER116 DNA Mariner 0 80 25 241 206 82 27 chr1 261144077 261144150 -21049514 - MER5A DNA MER1_type -26 163 87 845 262 135 8 chr1 261146768 261147012 -21046652 + MLT1A2 LTR MaLR 100 374 0 438 291 57 90 chr1 261147211 261147455 -21046209 + MIR SINE MIR 2 237 -25 21 0 0 0 chr1 261147839 261147860 -21045804 + AT_rich Low_complexity Low_complexity 1 21 0 1533 246 99 30 chr1 261148346 261148879 -21044785 + MLT1G LTR MaLR 21 590 0 1254 195 105 25 chr1 261149540 261149969 -21043695 + MLT1H LTR MaLR 12 549 0 2323 94 0 7 chr1 261150223 261150522 -21043142 - AluSq SINE Alu -16 297 1 392 88 0 18 chr1 261151191 261151274 -21042390 + Alu SINE Alu 234 315 0 1042 150 12 54 chr1 261151274 261151487 -21042177 + MSTD LTR MaLR 203 396 0 645 260 148 63 chr1 261151542 261152000 -21041664 + MLT1J LTR MaLR 9 505 -6 198 280 0 0 chr1 261152009 261152059 -21041605 - L2 LINE L2 -42 3271 3222 527 299 151 18 chr1 261152315 261152813 -21040851 + L2 LINE L2 2078 2641 -673 1495 139 86 57 chr1 261152910 261153211 -21040453 + AluJo SINE Alu 1 310 -2 361 325 0 17 chr1 261153359 261153479 -21040185 + L2 LINE L2 3121 3238 -34 2107 135 10 3 chr1 261154173 261154476 -21039188 + AluJo SINE Alu 1 305 -7 402 213 0 30 chr1 261154498 261154603 -21039061 + FLAM_A SINE Alu 40 115 -18 222 105 0 0 chr1 261155294 261155332 -21038332 + (TG)n Simple_repeat Simple_repeat 1 38 0 757 250 57 28 chr1 261155618 261155830 -21037834 + MIR SINE MIR 2 219 -43 289 320 13 0 chr1 261155899 261155977 -21037687 + L2 LINE L2 3190 3268 -4 1298 109 19 0 chr1 261156070 261156280 -21037384 + L1MB3 LINE L1 5970 6183 0 303 331 169 0 chr1 261157632 261157810 -21035854 + MIR SINE MIR 4 211 -51 933 310 28 3 chr1 261158121 261158411 -21035253 + MLT1K LTR MaLR 3 299 -289 2205 174 22 33 chr1 261158411 261158696 -21034968 + L1MA9 LINE L1 5821 6100 -212 2271 104 3 3 chr1 261158696 261158993 -21034671 + AluSx SINE Alu 1 297 -15 2205 174 22 33 chr1 261158993 261159196 -21034468 + L1MA9 LINE L1 6100 6304 -8 1034 264 31 24 chr1 261159199 261159491 -21034173 + MLT1K LTR MaLR 291 584 -4 359 245 102 54 chr1 261159502 261159649 -21034015 - MIR SINE MIR -43 219 66 659 229 70 0 chr1 261159852 261160009 -21033655 + MIR3 SINE MIR 30 197 -11 2312 113 0 3 chr1 261160891 261161202 -21032462 + AluSp SINE Alu 1 310 -3 1575 189 22 65 chr1 261161247 261161555 -21032109 + Charlie4a DNA MER1_type 38 319 -1642 1975 123 7 27 chr1 261161555 261161883 -21031781 - AluSx SINE Alu 0 312 1 1575 189 22 65 chr1 261161883 261162066 -21031598 + Charlie4a DNA MER1_type 319 508 0 295 257 79 92 chr1 261163155 261163307 -21030357 - MER5A DNA MER1_type -32 157 8 336 293 61 0 chr1 261163350 261163449 -21030215 - L2 LINE L2 -21 3251 3147 937 183 67 36 chr1 261163532 261163756 -21029908 - MIR SINE MIR 0 262 32 871 251 176 5 chr1 261167503 261167877 -21025787 - LTR33 LTR ERVL -63 458 21 2320 217 75 24 chr1 261169671 261170326 -21023338 - L1MC4 LINE L1 0 8042 7355 1327 147 61 64 chr1 261170304 261170330 -21023334 - L1MB8 LINE L1 -1 6177 6152 * 2233 118 0 19 chr1 261170330 261170643 -21023021 - AluSx SINE Alu -5 307 1 1327 147 61 64 chr1 261170643 261170943 -21022721 - L1MB8 LINE L1 -26 6152 5852 392 305 96 17 chr1 261170943 261171182 -21022482 - L1MC4 LINE L1 -656 7386 7129 420 207 96 7 chr1 261171723 261171858 -21021806 - L2 LINE L2 -190 3082 2936 1300 121 0 0 chr1 261172665 261172839 -21020825 - AluSg/x SINE Alu -5 305 132 2467 65 0 3 chr1 261172839 261173132 -21020532 - AluY SINE Alu -15 296 5 287 222 16 0 chr1 261173135 261173198 -21020466 + L1MB7 LINE L1 6111 6174 -10 3708 135 19 6 chr1 261174506 261175145 -21018519 - L1 LINE L1 -1817 4329 3683 4262 161 23 27 chr1 261175146 261175984 -21017680 + L1MA7 LINE L1 5454 6287 -4 508 259 65 7 chr1 261176098 261176237 -21017427 - MIR SINE MIR -64 144 8 407 276 79 49 chr1 261176341 261176544 -21017120 + L2 LINE L2 3036 3244 -28 1198 154 52 19 chr1 261176734 261177001 -21016663 + MER33 DNA MER1_type 49 324 0 4493 241 54 11 chr1 261177004 261178154 -21015510 - L2 LINE L2 -507 2807 1609 255 275 33 0 chr1 261178154 261178245 -21015419 - HAL1 LINE L1 -149 2358 2265 599 259 102 34 chr1 261178474 261178768 -21014896 - MLT1I LTR MaLR -2 407 94 265 163 0 0 chr1 261179036 261179085 -21014579 - HAL1 LINE L1 -354 2153 2105 464 308 131 0 chr1 261179581 261179802 -21013862 - HAL1 LINE L1 -612 1895 1646 223 281 16 0 chr1 261179807 261179871 -21013793 + MIR3 SINE MIR 117 181 -27 25 31 0 0 chr1 261180291 261180323 -21013341 + AT_rich Low_complexity Low_complexity 1 32 0 247 308 167 0 chr1 261181099 261181177 -21012487 + L2 LINE L2 3182 3272 0 251 258 206 0 chr1 261181552 261181649 -21012015 - MIR SINE MIR -20 242 126 206 61 0 30 chr1 261181866 261181899 -21011765 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 276 30 0 0 chr1 261183862 261183895 -21009769 + (CCG)n Simple_repeat Simple_repeat 1 33 0 740 123 19 0 chr1 261184506 261184612 -21009052 + AluJo SINE Alu 4 111 -201 180 0 0 0 chr1 261184640 261184660 -21009004 + (A)n Simple_repeat Simple_repeat 1 20 0 223 250 0 0 chr1 261185324 261185368 -21008296 + (CA)n Simple_repeat Simple_repeat 2 45 0 230 306 10 71 chr1 261185382 261185480 -21008184 + MIR SINE MIR 30 121 -87 194 304 174 0 chr1 261185514 261185606 -21008058 - L2 LINE L2 -5 3308 3201 1029 228 16 28 chr1 261185827 261186081 -21007583 - MIR SINE MIR -6 256 6 204 270 168 47 chr1 261186256 261186482 -21007182 - L2 LINE L2 -350 2964 2698 1732 224 74 42 chr1 261186482 261187053 -21006611 - MLT1G LTR MaLR 0 590 2 204 270 168 47 chr1 261187053 261187100 -21006564 - L2 LINE L2 -616 2698 2658 283 244 276 38 chr1 261187312 261187434 -21006230 - L2 LINE L2 -1022 2292 2200 2141 119 10 3 chr1 261187434 261187729 -21005935 + AluJb SINE Alu 1 297 -15 283 244 276 38 chr1 261187729 261187921 -21005743 - L2 LINE L2 -1114 2200 1903 446 290 45 6 chr1 261187970 261188146 -21005518 - L1M4 LINE L1 -2734 3412 3230 400 222 133 22 chr1 261188570 261188705 -21004959 + MIR SINE MIR 79 228 -34 557 259 0 7 chr1 261188779 261188926 -21004738 + MLT2F LTR ERVL 1 146 -517 417 219 10 10 chr1 261188925 261189021 -21004643 + MLT1E3 LTR MaLR 46 141 -483 * 326 142 0 160 chr1 261188946 261189024 -21004640 + MLT2C1 LTR ERVL 47 105 -292 * 1985 158 0 7 chr1 261189024 261189328 -21004336 + AluJb SINE Alu 5 306 -6 326 142 0 160 chr1 261189328 261189355 -21004309 + MLT2C1 LTR ERVL 105 135 -262 1216 173 4 40 chr1 261189362 261189587 -21004077 + AluJo SINE Alu 87 303 -9 267 153 169 3 chr1 261189587 261189662 -21004002 + MLT1E3 LTR MaLR 156 265 -389 3629 122 97 2 chr1 261189802 261190359 -21003305 + LTR66 LTR ERVL 1 610 0 3146 106 9 15 chr1 261190360 261190824 -21002840 + HERVL66 LTR ERVL 1 461 -3868 25460 133 28 18 chr1 261192366 261196698 -20996966 + HERVL66 LTR ERVL 461 4329 0 3641 103 89 23 chr1 261196698 261197219 -20996445 + LTR66 LTR ERVL 1 565 -45 2232 109 7 3 chr1 261197219 261197523 -20996141 + AluSx SINE Alu 2 306 -6 3641 103 89 23 chr1 261197523 261197573 -20996091 + LTR66 LTR ERVL 565 610 0 318 153 42 28 chr1 261197573 261197645 -20996019 + MLT2C2 LTR ERVL 344 416 -48 203 161 0 0 chr1 261197645 261197676 -20995988 + polypyrimidine Low_complexity Low_complexity 1 31 0 593 240 115 28 chr1 261197829 261198046 -20995618 - MLT1K LTR MaLR -164 424 189 217 288 54 81 chr1 261198380 261198491 -20995173 + MIR SINE MIR 29 137 -71 911 182 15 45 chr1 261199648 261199846 -20993818 - MER3 DNA MER1_type -17 192 1 277 293 188 17 chr1 261200011 261200192 -20993472 - MLT1J LTR MaLR -143 368 157 641 159 56 9 chr1 261200260 261200346 -20993318 + AluJ SINE Alu 35 128 -184 180 0 0 0 chr1 261200346 261200366 -20993298 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 641 159 56 9 chr1 261200366 261200386 -20993278 + AluJ SINE Alu 128 146 -166 1041 154 0 0 chr1 261200454 261200603 -20993061 + AluJ SINE Alu 145 293 -19 533 265 15 7 chr1 261200815 261200951 -20992713 - MIR SINE MIR -33 229 93 219 276 0 0 chr1 261202008 261202066 -20991598 + L2 LINE L2 3207 3264 -8 304 303 0 0 chr1 261202227 261202316 -20991348 + GA-rich Low_complexity Low_complexity 2 90 0 474 275 84 30 chr1 261203088 261203255 -20990409 + MIR SINE MIR 58 233 -29 1622 149 104 19 chr1 261203513 261203822 -20989842 + MER7A DNA MER2_type 14 346 0 1184 195 92 147 chr1 261204144 261204816 -20988848 + MLT1E1 LTR MaLR 20 654 0 603 310 153 0 chr1 261206054 261206296 -20987368 - L3 LINE CR1 -9 1568 1290 236 243 112 92 chr1 261206433 261206639 -20987025 + MLT1H1 LTR MaLR 96 305 -244 816 57 0 0 chr1 261206681 261206787 -20986877 - L1MA2 LINE L1 -1 6303 6198 549 242 76 25 chr1 261206792 261206990 -20986674 + MLT1H1 LTR MaLR 346 553 -2 346 301 126 58 chr1 261207622 261207825 -20985839 - L2 LINE L2 -90 3182 2945 978 271 92 51 chr1 261207825 261208312 -20985352 + MLT1J LTR MaLR 5 511 0 346 301 126 58 chr1 261208312 261208450 -20985214 - L2 LINE L2 -327 2945 2818 484 202 6 186 chr1 261209295 261209607 -20984057 + L1MC5 LINE L1 6793 7048 -913 2305 118 0 0 chr1 261209912 261210209 -20983455 - AluSx SINE Alu -15 297 1 190 211 0 26 chr1 261210835 261210911 -20982753 + GA-rich Low_complexity Low_complexity 3 76 0 2482 93 0 0 chr1 261211017 261211327 -20982337 - AluSx SINE Alu -2 310 1 280 248 99 20 chr1 261211328 261211429 -20982235 - MIR3 SINE MIR -34 174 66 245 367 115 23 chr1 261212070 261212459 -20981205 - L2 LINE L2 -2 3270 1166 464 235 10 0 chr1 261213438 261213536 -20980128 + MIR SINE MIR 41 139 -69 234 309 25 12 chr1 261213566 261213647 -20980017 + MIR SINE MIR 2 83 -179 766 161 172 11 chr1 261214174 261214360 -20979304 - L1MB8 LINE L1 -2 6176 5961 275 281 170 13 chr1 261214493 261214646 -20979018 - MIR3 SINE MIR -29 179 3 1761 168 3 18 chr1 261214834 261215120 -20978544 + AluJo SINE Alu 11 292 -20 570 230 120 28 chr1 261215360 261215578 -20978086 + MIR SINE MIR 21 262 0 302 254 146 18 chr1 261216049 261216159 -20977505 - L2 LINE L2 -7 3265 3142 1657 164 7 37 chr1 261217123 261217421 -20976243 + AluJb SINE Alu 1 289 -23 1089 311 47 10 chr1 261217425 261217806 -20975858 - L1ME3A LINE L1 -255 5915 5549 2290 92 27 0 chr1 261217806 261218098 -20975566 - AluSg SINE Alu -10 300 1 1089 311 47 10 chr1 261218098 261218268 -20975396 - L1ME3A LINE L1 -621 5549 5338 2301 112 7 0 chr1 261218268 261218573 -20975091 - AluSq SINE Alu -6 307 1 1089 311 47 10 chr1 261218573 261218622 -20975042 - L1ME3A LINE L1 -832 5338 5292 454 316 71 31 chr1 261218624 261218820 -20974844 - L1ME3A LINE L1 -860 5286 5083 352 92 46 0 chr1 261218845 261218910 -20974754 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 325 143 0 0 chr1 261218928 261218991 -20974673 - AluSp/q SINE Alu 0 303 241 273 276 0 75 chr1 261219097 261219231 -20974433 + MER21B LTR ERV1 688 811 -52 608 201 171 10 chr1 261219274 261219485 -20974179 + MER31A LTR ERV1 240 543 0 1735 148 13 16 chr1 261219885 261220189 -20973475 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr1 261220466 261220494 -20973170 + AT_rich Low_complexity Low_complexity 1 28 0 701 119 48 8 chr1 261220622 261220748 -20972916 - L1MB3 LINE L1 -3 6180 6050 2344 99 0 3 chr1 261220766 261221060 -20972604 - AluSp SINE Alu -18 295 3 890 180 29 17 chr1 261221102 261221274 -20972390 - L1MC1 LINE L1 -19 6314 6141 1344 174 16 90 chr1 261221274 261221516 -20972148 - L1MB2 LINE L1 -109 6062 5804 1655 146 115 4 chr1 261221516 261221776 -20971888 - AluSg1 SINE Alu -15 294 6 1344 174 16 90 chr1 261221776 261221791 -20971873 - L1MB2 LINE L1 -367 5804 5789 2433 74 7 3 chr1 261221791 261222087 -20971577 - AluSq SINE Alu -16 297 1 1344 174 16 90 chr1 261222087 261222207 -20971457 - L1MB2 LINE L1 -382 5789 5712 452 200 17 0 chr1 261222331 261222446 -20971218 - MER4-int LTR ERV1 -4891 1867 1751 1142 148 131 9 chr1 261222446 261222675 -20970989 + LTR8 LTR ERV1 1 257 -434 3949 77 75 28 chr1 261222675 261223367 -20970297 - MER4-int LTR ERV1 -4103 2495 1771 1368 74 66 112 chr1 261223365 261223614 -20970050 - MER4-int LTR ERV1 -4266 1268 1009 * 2532 74 3 0 chr1 261223614 261223923 -20969741 - AluSp SINE Alu -3 310 1 1368 74 66 112 chr1 261223923 261224024 -20969640 - MER4-int LTR ERV1 -4525 1009 504 225 152 0 43 chr1 261224045 261224091 -20969573 - LTR49 LTR ERV1 -279 316 273 3022 85 127 59 chr1 261224208 261224782 -20968882 - MER4B-int LTR ERV1 -5980 618 6 1470 115 5 0 chr1 261224808 261225017 -20968647 - MER4B LTR ERV1 0 610 401 26 64 0 0 chr1 261225630 261225677 -20967987 + GC_rich Low_complexity Low_complexity 1 47 0 577 203 49 31 chr1 261226373 261226536 -20967128 - MIR3 SINE MIR -21 187 22 327 255 131 28 chr1 261227425 261227570 -20966094 - MIR SINE MIR -85 177 18 2470 78 7 0 chr1 261227969 261228275 -20965389 + AluSq SINE Alu 1 308 -5 1024 168 11 36 chr1 261228275 261228499 -20965165 - L1MB2 LINE L1 -548 5635 5418 2272 99 0 0 chr1 261228939 261229259 -20964405 + AluSx SINE Alu 1 320 0 2266 87 0 7 chr1 261229263 261229571 -20964093 + AluSg1 SINE Alu 1 309 0 302 319 8 17 chr1 261230365 261230484 -20963180 - MER5A DNA MER1_type -63 126 9 1916 134 0 10 chr1 261231064 261231356 -20962308 + AluJo SINE Alu 3 291 -21 2336 75 0 0 chr1 261231448 261231756 -20961908 + AluSg SINE Alu 1 308 0 1921 107 113 23 chr1 261232749 261233095 -20960569 + MER83B LTR ERV1 2 378 0 409 221 107 41 chr1 261233332 261233454 -20960210 - L2 LINE L2 -11 3302 3173 2432 83 3 0 chr1 261234276 261234576 -20959088 + AluSp SINE Alu 1 301 -12 191 245 20 0 chr1 261235415 261235464 -20958200 - MIR3 SINE MIR -6 202 153 185 307 105 61 chr1 261235598 261235712 -20957952 - MIR3 SINE MIR -15 193 75 2286 84 3 3 chr1 261236210 261236525 -20957139 - AluSq SINE Alu 0 315 1 762 278 130 27 chr1 261237435 261237874 -20955790 + MLT1L LTR MaLR 126 609 -6 526 182 0 0 chr1 261238198 261238286 -20955378 - MER53 DNA DNA 0 189 102 902 179 6 6 chr1 261239360 261239528 -20954136 - MER45 DNA AcHobo -2 1579 1412 735 230 184 11 chr1 261239614 261240070 -20953594 - MER45C DNA AcHobo -325 628 3 312 27 0 0 chr1 261240431 261240468 -20953196 + (GA)n Simple_repeat Simple_repeat 1 37 0 272 27 27 0 chr1 261240467 261240504 -20953160 + (TG)n Simple_repeat Simple_repeat 2 39 0 * 341 276 0 7 chr1 261242006 261242158 -20951506 + (CATA)n Simple_repeat Simple_repeat 3 153 0 930 208 36 11 chr1 261243116 261243461 -20950203 + MLT1I LTR MaLR 1 409 0 316 288 108 22 chr1 261243842 261243880 -20949784 + MIR SINE MIR 1 34 -228 949 151 172 0 chr1 261243880 261244066 -20949598 + MER20 DNA MER1_type 1 218 -1 316 288 108 22 chr1 261244066 261244166 -20949498 + MIR SINE MIR 34 151 -111 248 284 74 12 chr1 261244183 261244264 -20949400 + L2 LINE L2 3137 3222 -50 2223 131 0 0 chr1 261244831 261245137 -20948527 - AluSx SINE Alu -6 306 1 1232 107 53 0 chr1 261245439 261245626 -20948038 - L1PA10 LINE L1 -3 6165 5969 244 172 111 91 chr1 261246961 261247039 -20946625 + L1MC/D LINE L1 5340 5422 -937 2337 92 10 3 chr1 261247039 261247342 -20946322 + AluSg SINE Alu 1 305 -5 244 172 111 91 chr1 261247342 261247362 -20946302 + L1MC/D LINE L1 5422 5440 -919 1392 165 88 42 chr1 261247367 261247652 -20946012 + AluJo SINE Alu 6 303 -9 1488 154 15 59 chr1 261247663 261248000 -20945664 + L1MC/D LINE L1 5429 5750 -492 1956 116 31 14 chr1 261248021 261248314 -20945350 + AluSx SINE Alu 1 298 -14 436 241 208 33 chr1 261249449 261249670 -20943994 + MIR SINE MIR 7 262 0 323 238 20 59 chr1 261249666 261249767 -20943897 - L3 LINE CR1 -572 1005 909 * 2065 118 28 0 chr1 261249797 261250085 -20943579 + AluSg SINE Alu 1 296 -14 1966 86 4 20 chr1 261250089 261250344 -20943320 + AluSp SINE Alu 1 251 -62 230 121 0 0 chr1 261250345 261250378 -20943286 + LTR16B LTR ERVL 432 464 0 835 303 92 3 chr1 261250384 261250711 -20942953 - L2 LINE L2 -541 2773 2418 2331 164 86 13 chr1 261251157 261251625 -20942039 + MLT1D LTR MaLR 4 505 0 26 30 0 0 chr1 261251685 261251718 -20941946 + AT_rich Low_complexity Low_complexity 1 33 0 767 251 211 27 chr1 261251848 261252223 -20941441 + LTR67 LTR ERVL 114 557 0 2214 101 3 31 chr1 261254149 261254466 -20939198 - AluSq SINE Alu -5 308 1 2440 88 7 59 chr1 261255158 261255405 -20938259 - L1MA2 LINE L1 -4 6300 6082 2528 73 3 0 chr1 261255405 261255708 -20937956 - AluSp SINE Alu -9 304 1 2440 88 7 59 chr1 261255708 261255881 -20937783 - L1MA2 LINE L1 -222 6082 5902 869 187 41 6 chr1 261255882 261256053 -20937611 - L1ME1 LINE L1 -48 6118 5942 1216 245 97 69 chr1 261256236 261256376 -20937288 + MLT1H1 LTR MaLR 1 136 -419 1739 148 59 46 chr1 261256376 261256679 -20936985 + AluJb SINE Alu 1 307 -5 1216 245 97 69 chr1 261256679 261257077 -20936587 + MLT1H1 LTR MaLR 136 554 -1 2183 120 0 0 chr1 261258249 261258540 -20935124 - AluSq SINE Alu -22 291 1 262 251 190 11 chr1 261258540 261258719 -20934945 - L1ME4a LINE L1 -108 6013 5803 410 260 62 88 chr1 261259091 261259283 -20934381 + MIR3 SINE MIR 10 196 -12 331 281 145 66 chr1 261259486 261259714 -20933950 - MIR SINE MIR -4 258 13 291 281 117 8 chr1 261261346 261261474 -20932190 - L1ME4a LINE L1 -28 6093 5952 338 229 313 8 chr1 261262105 261262236 -20931428 + MIR SINE MIR 2 172 -90 2179 133 0 0 chr1 261262831 261263131 -20930533 - AluSx SINE Alu -12 300 1 1048 157 36 0 chr1 261263989 261264155 -20929509 - FRAM SINE Alu -12 164 1 24 32 0 0 chr1 261264288 261264319 -20929345 + AT_rich Low_complexity Low_complexity 1 31 0 845 122 0 0 chr1 261264631 261264746 -20928918 - AluSg/x SINE Alu -10 300 186 252 242 15 15 chr1 261264868 261264934 -20928730 - MLT1K LTR MaLR -11 577 512 29 0 0 0 chr1 261265252 261265281 -20928383 + AT_rich Low_complexity Low_complexity 1 29 0 740 272 59 8 chr1 261265526 261265765 -20927899 - MIR SINE MIR -11 251 1 2170 121 20 0 chr1 261265873 261266170 -20927494 + AluJb SINE Alu 1 303 -9 306 164 0 0 chr1 261266170 261266225 -20927439 + GA-rich Low_complexity Low_complexity 1 55 0 571 260 80 45 chr1 261266325 261266525 -20927139 - L2 LINE L2 -802 2512 2306 481 300 128 45 chr1 261266592 261266729 -20926935 + L1ME LINE L1 5309 5433 -688 1183 218 104 19 chr1 261266729 261267046 -20926618 + MER2 DNA MER2_type 1 344 0 481 300 128 45 chr1 261267046 261267375 -20926289 + L1ME LINE L1 5433 5814 -307 2398 132 89 0 chr1 261267610 261268003 -20925661 - MSTA LTR MaLR 0 428 1 309 261 149 45 chr1 261270563 261270697 -20922967 + MER5B DNA MER1_type 18 165 -13 344 274 20 29 chr1 261271327 261271429 -20922235 + L2 LINE L2 3167 3267 -5 183 233 96 68 chr1 261271598 261271671 -20921993 + L2 LINE L2 2369 2443 -871 2265 113 0 10 chr1 261272684 261272984 -20920680 + AluSx SINE Alu 3 299 -13 189 390 34 7 chr1 261273001 261273147 -20920517 + L2 LINE L2 2594 2743 -571 246 222 0 0 chr1 261274627 261274672 -20918992 - AluJ/monomer SINE Alu -112 54 10 957 126 7 0 chr1 261274702 261274837 -20918827 - FLAM_C SINE Alu -7 136 1 1887 150 7 0 chr1 261275187 261275473 -20918191 + AluJb SINE Alu 1 288 -24 1160 198 174 10 chr1 261275682 261275980 -20917684 - MLT1A1 LTR MaLR -7 358 12 491 162 0 4 chr1 261276535 261276751 -20916913 + AluJb SINE Alu 1 303 -9 415 254 32 32 chr1 261277185 261277311 -20916353 - L2 LINE L2 0 3313 3188 417 304 23 112 chr1 261277671 261277974 -20915690 - L2 LINE L2 -4 3268 2993 189 0 0 0 chr1 261278331 261278352 -20915312 + (A)n Simple_repeat Simple_repeat 1 21 0 1879 149 16 32 chr1 261278469 261278784 -20914880 - AluJb SINE Alu 0 312 3 292 226 142 11 chr1 261279078 261279175 -20914489 + MIR SINE MIR 34 145 -63 203 363 39 10 chr1 261281482 261281584 -20912080 - MIR SINE MIR -111 151 47 1034 118 0 0 chr1 261281703 261281838 -20911826 + AluSq/x SINE Alu 1 135 -177 2112 138 0 0 chr1 261281838 261282134 -20911530 + AluY SINE Alu 1 296 -15 304 269 167 0 chr1 261282289 261282367 -20911297 + MER91A DNA MER1_type 66 156 -40 1213 209 8 0 chr1 261282475 261282709 -20910955 - AluSc SINE Alu -61 248 13 311 194 0 16 chr1 261282716 261282778 -20910886 + MER91A DNA MER1_type 130 190 0 1927 155 6 35 chr1 261282848 261283165 -20910499 + AluJo SINE Alu 1 308 -4 2570 64 0 0 chr1 261283165 261283476 -20910188 + AluY SINE Alu 1 311 0 277 265 214 0 chr1 261283808 261283906 -20909758 + L2 LINE L2 3193 3311 -2 230 182 36 0 chr1 261284143 261284198 -20909466 - L1ME4a LINE L1 -5 6116 6060 631 222 46 31 chr1 261284787 261284981 -20908683 + MER117 DNA MER1_type 1 197 0 2312 104 7 0 chr1 261285881 261286189 -20907475 - AluSq SINE Alu -3 310 1 885 118 0 7 chr1 261286595 261286731 -20906933 + Charlie4 DNA MER1_type 1827 1961 0 248 281 0 0 chr1 261286733 261286790 -20906874 + MLT1J LTR MaLR 64 120 -391 315 0 0 0 chr1 261286832 261286867 -20906797 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 187 215 46 46 chr1 261287129 261287194 -20906470 + L3 LINE CR1 1442 1506 -71 191 245 20 0 chr1 261287647 261287696 -20905968 - MIR3 SINE MIR -6 202 153 185 307 105 61 chr1 261287830 261287944 -20905720 - MIR3 SINE MIR -15 193 75 2151 98 3 11 chr1 261288442 261288759 -20904905 - AluSq SINE Alu 0 315 1 428 236 27 18 chr1 261288759 261288869 -20904795 + Zaphod DNA AcHobo 3921 4031 0 1815 122 49 3 chr1 261289514 261289801 -20903863 + AluSx SINE Alu 1 300 -12 489 300 6 35 chr1 261289849 261290019 -20903645 + MIR3 SINE MIR 35 199 -9 334 279 81 0 chr1 261290421 261290532 -20903132 + MIR SINE MIR 139 258 -4 * 348 275 99 53 chr1 261290513 261290644 -20903020 - L2 LINE L2 -9 3263 3127 406 306 83 21 chr1 261290835 261291028 -20902636 + MLT1K LTR MaLR 102 306 -282 261 0 0 0 chr1 261291124 261291153 -20902511 + (GA)n Simple_repeat Simple_repeat 1 29 0 311 248 158 15 chr1 261291156 261291289 -20902375 + MLT1K LTR MaLR 437 588 0 1652 157 64 15 chr1 261291461 261291753 -20901911 + AluJo SINE Alu 2 306 0 2148 113 7 19 chr1 261291810 261292120 -20901544 + AluSq SINE Alu 1 306 -7 275 308 38 8 chr1 261293070 261293203 -20900461 - L1MEc LINE L1 -6182 214 78 2285 104 0 10 chr1 261293279 261293586 -20900078 + AluSx SINE Alu 1 304 -8 524 248 25 70 chr1 261293602 261293844 -20899820 - HAL1b LINE L1 -555 793 563 421 245 66 9 chr1 261294479 261294585 -20899079 + MIR SINE MIR 30 141 -121 1962 161 0 25 chr1 261294606 261294923 -20898741 + AluJo SINE Alu 1 309 -3 216 97 0 0 chr1 261295565 261295596 -20898068 + (A)n Simple_repeat Simple_repeat 1 31 0 295 269 150 62 chr1 261295635 261295895 -20897769 + MLT1K LTR MaLR 209 491 -97 530 246 137 6 chr1 261295929 261296112 -20897552 + MER20B DNA MER1_type 18 224 -559 2210 192 49 20 chr1 261296144 261296633 -20897031 + MLT1D LTR MaLR 3 505 0 920 246 124 75 chr1 261297033 261297550 -20896114 + MER20B DNA MER1_type 236 777 -6 1734 181 13 23 chr1 261298000 261298310 -20895354 - AluJb SINE Alu -5 307 1 227 336 147 9 chr1 261298319 261298435 -20895229 + L2 LINE L2 3173 3304 -9 1767 116 13 70 chr1 261299997 261300299 -20893365 - AluJo SINE Alu -27 285 1 327 247 22 35 chr1 261300488 261300611 -20893053 + MIR SINE MIR 101 221 -41 223 217 17 50 chr1 261301222 261301282 -20892382 - L2 LINE L2 -7 3265 3208 647 244 111 0 chr1 261302008 261302188 -20891476 + MIR SINE MIR 47 246 -16 438 217 82 78 chr1 261302404 261302605 -20891059 + MIR SINE MIR 12 210 -52 342 152 76 0 chr1 261304139 261304205 -20889459 + AluS SINE Alu 228 298 -3 245 279 16 8 chr1 261304215 261304337 -20889327 - L1 LINE L1 -2367 3779 3657 268 397 74 4 chr1 261304431 261304660 -20889004 - L3 LINE CR1 -1257 320 76 1287 163 125 58 chr1 261305385 261305759 -20887905 + MLT2B1 LTR ERVL 1 381 -33 432 55 0 0 chr1 261305759 261305814 -20887850 + (CA)n Simple_repeat Simple_repeat 2 56 0 1287 163 125 58 chr1 261305814 261305851 -20887813 + MLT2B1 LTR ERVL 381 414 0 245 164 0 18 chr1 261305875 261305930 -20887734 + GA-rich Low_complexity Low_complexity 2 55 0 282 224 120 56 chr1 261306463 261306588 -20887076 - L1ME4a LINE L1 0 6121 5989 383 262 81 24 chr1 261306844 261307127 -20886537 - MLT1H LTR MaLR -175 380 28 1616 189 24 0 chr1 261307127 261307424 -20886240 + AluJo SINE Alu 7 310 -2 429 70 0 0 chr1 261307424 261307481 -20886183 + (GGGGA)n Simple_repeat Simple_repeat 2 58 0 517 343 95 25 chr1 261307661 261308177 -20885487 + L1MC4a LINE L1 6044 6595 -1213 808 177 0 0 chr1 261308319 261308449 -20885215 + FLAM_C SINE Alu 11 140 -3 393 179 36 0 chr1 261308462 261308574 -20885090 + GA-rich Low_complexity Low_complexity 2 117 0 2532 76 0 0 chr1 261308597 261308898 -20884766 - AluY SINE Alu -9 302 2 1938 157 0 3 chr1 261308951 261309237 -20884427 + AluJo SINE Alu 11 295 -17 303 284 9 9 chr1 261309335 261309444 -20884220 + L1MC4a LINE L1 7301 7409 -399 655 243 34 23 chr1 261309444 261309621 -20884043 + MER97a DNA MER1_type? 1 179 -715 634 234 105 93 chr1 261309667 261310260 -20883404 + L1MC5 LINE L1 7313 7912 -49 189 147 0 0 chr1 261310319 261310353 -20883311 + (CAT)n Simple_repeat Simple_repeat 2 35 0 3133 73 12 0 chr1 261310713 261311121 -20882543 + MLT2A2 LTR ERVL 1 413 -40 210 183 24 12 chr1 261311134 261311216 -20882448 + (TA)n Simple_repeat Simple_repeat 2 84 0 332 146 0 0 chr1 261311218 261311273 -20882391 + MLT2A2 LTR ERVL 399 453 0 35138 63 5 11 chr1 261312729 261318354 -20875310 + L1PA5 LINE L1 564 6154 0 353 258 169 0 chr1 261319972 261320096 -20873568 + MIR3 SINE MIR 13 157 -51 344 299 257 5 chr1 261320353 261320567 -20873097 + L2 LINE L2 3046 3313 0 565 321 80 13 chr1 261322187 261322424 -20871240 - MIR SINE MIR -2 260 8 2386 119 0 0 chr1 261322471 261322781 -20870883 + AluSg SINE Alu 1 310 0 1139 130 31 0 chr1 261322804 261322996 -20870668 + LTR9B LTR ERV1 445 642 -2 278 245 51 61 chr1 261322998 261323096 -20870568 + HUERS-P3 LTR ERV1 1 97 -8822 830 143 48 20 chr1 261323098 261323245 -20870419 + HUERS-P3 LTR ERV1 409 559 -6859 3464 182 65 37 chr1 261323248 261324050 -20869614 + HUERS-P3 LTR ERV1 748 1652 -7267 351 200 0 0 chr1 261324047 261324107 -20869557 + HUERS-P3 LTR ERV1 1791 1850 -7069 * 361 241 13 0 chr1 261324688 261324767 -20868897 - FRAM SINE Alu -22 144 65 1917 160 0 37 chr1 261324815 261325140 -20868524 + AluSq SINE Alu 1 313 0 2094 77 4 0 chr1 261325140 261325412 -20868252 + HUERS-P3 LTR ERV1 5872 6144 -1274 1296 139 0 0 chr1 261325410 261325612 -20868052 + HUERS-P3 LTR ERV1 8717 8918 -1 * 3520 90 28 54 chr1 261325612 261326187 -20867477 + LTR9B LTR ERV1 1 560 -84 198 103 0 0 chr1 261326187 261326216 -20867448 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 314 292 62 12 chr1 261328200 261328361 -20865303 + L2 LINE L2 2909 3077 -195 2461 197 24 2 chr1 261328410 261328876 -20864788 - MER70B LTR ERVL -102 476 1 356 307 35 9 chr1 261328943 261329057 -20864607 + L2 LINE L2 3151 3267 -5 6168 143 14 16 chr1 261329570 261329879 -20863785 + L1MA4 LINE L1 4122 4430 -1870 2148 125 0 0 chr1 261329879 261330167 -20863497 - AluSx SINE Alu -24 288 1 6168 143 14 16 chr1 261330167 261331990 -20861674 + L1MA4 LINE L1 4430 6245 -55 978 147 11 16 chr1 261331991 261332175 -20861489 - MER61A LTR ERV1 -160 183 1 208 300 20 50 chr1 261332180 261332280 -20861384 - L2 LINE L2 0 3313 3217 1453 234 136 0 chr1 261332642 261333053 -20860611 - MLT1J LTR MaLR -8 503 37 263 225 62 12 chr1 261333338 261333418 -20860246 + MIR SINE MIR 81 164 -98 783 175 7 14 chr1 261333419 261333562 -20860102 + FLAM_C SINE Alu 2 143 0 248 162 0 0 chr1 261333569 261333606 -20860058 + MIR SINE MIR 158 194 -68 384 276 91 57 chr1 261333628 261333892 -20859772 - L1MC4 LINE L1 -1275 6767 6495 656 263 39 3 chr1 261334315 261334517 -20859147 + MIR SINE MIR 4 212 -42 396 263 73 78 chr1 261335615 261336091 -20857573 + HAL1 LINE L1 47 520 -1987 1909 268 117 25 chr1 261336307 261336672 -20856992 + HAL1 LINE L1 785 1115 -1392 2850 162 34 46 chr1 261336672 261336712 -20856952 - MLT2B3 LTR ERVL 0 554 515 189 0 0 0 chr1 261336712 261336733 -20856931 + (GA)n Simple_repeat Simple_repeat 2 22 0 2850 162 34 46 chr1 261336733 261337253 -20856411 - MLT2B3 LTR ERVL -39 515 1 1909 268 117 25 chr1 261337253 261338128 -20855536 + HAL1 LINE L1 1115 2211 -296 2604 66 0 0 chr1 261338266 261338571 -20855093 + AluY SINE Alu 1 305 -6 510 147 82 106 chr1 261338880 261338987 -20854677 + LTR45B LTR ERV1 324 429 -60 2204 99 0 0 chr1 261338987 261339306 -20854358 + AluSg SINE Alu 1 319 0 510 147 82 106 chr1 261339306 261339366 -20854298 + LTR45B LTR ERV1 429 489 0 603 223 14 0 chr1 261339366 261339514 -20854150 + HAL1 LINE L1 2225 2374 -133 1046 205 39 4 chr1 261339515 261339744 -20853920 - MLT1E LTR MaLR -1 592 356 263 125 0 36 chr1 261339746 261339802 -20853862 - MADE1 DNA Mariner -26 54 1 818 172 0 0 chr1 261339804 261339926 -20853738 - FLAM_A SINE Alu -11 122 1 393 276 167 70 chr1 261339928 261340258 -20853406 - MLT1E LTR MaLR -231 362 1 405 237 109 43 chr1 261340511 261340722 -20852942 - L1MC4 LINE L1 -1832 5976 5752 210 194 0 0 chr1 261341027 261341063 -20852601 - MIR SINE MIR -9 253 218 1842 147 32 32 chr1 261341364 261341676 -20851988 + AluJo SINE Alu 1 312 0 544 274 14 7 chr1 261342138 261342284 -20851380 - MIR SINE MIR -63 199 53 480 288 31 19 chr1 261342385 261342545 -20851119 - L3 LINE CR1 -990 587 426 469 255 34 98 chr1 261343092 261343229 -20850435 - Charlie8 DNA MER1_type -2197 220 103 2898 184 16 37 chr1 261343229 261343795 -20849869 + MLT2B3 LTR ERVL 1 554 0 469 255 34 98 chr1 261343795 261343892 -20849772 - Charlie8 DNA MER1_type -2314 103 1 1790 170 7 3 chr1 261344294 261344582 -20849082 + AluJo SINE Alu 1 289 -23 1593 235 3 8 chr1 261345182 261345569 -20848095 - L1ME1 LINE L1 -3 6163 5779 810 271 52 5 chr1 261345576 261345786 -20847878 - MIR SINE MIR -14 248 29 183 274 226 29 chr1 261346762 261346864 -20846800 + L2 LINE L2 3184 3305 -8 1032 164 36 36 chr1 261346955 261347205 -20846459 + L1MB3 LINE L1 5413 5662 -521 677 183 71 0 chr1 261347205 261347331 -20846333 + AluJb SINE Alu 1 135 -177 2849 141 16 61 chr1 261347334 261347399 -20846265 + L1MB3 LINE L1 5654 5720 -463 2017 157 0 19 chr1 261347399 261347717 -20845947 - AluSx SINE Alu 0 312 1 2849 141 16 61 chr1 261347717 261347982 -20845682 + L1MB3 LINE L1 5720 5951 -232 2154 160 95 32 chr1 261347982 261348383 -20845281 - MSTB LTR MaLR 0 426 1 2849 141 16 61 chr1 261348383 261348606 -20845058 + L1MB3 LINE L1 5951 6183 0 607 189 17 64 chr1 261348789 261348978 -20844686 + MER104 DNA Tc2 1 177 -3 1762 121 21 44 chr1 261349015 261349354 -20844310 - L1MB8 LINE L1 0 6178 5848 239 167 0 0 chr1 261349407 261349449 -20844215 + 5S rRNA rRNA 1 42 -79 660 270 77 10 chr1 261349944 261350140 -20843524 - L2 LINE L2 -5 3308 3100 696 268 112 43 chr1 261350183 261350333 -20843331 + LTR33 LTR ERVL 21 159 -362 929 232 61 0 chr1 261350333 261350531 -20843133 + MER63A DNA MER1_type 1 210 0 696 268 112 43 chr1 261350531 261350843 -20842821 + LTR33 LTR ERVL 159 515 -6 278 381 6 22 chr1 261351641 261351822 -20841842 + (TTGGGG)n Simple_repeat Simple_repeat 3 180 0 * 389 307 0 48 chr1 261351689 261351878 -20841786 + (TTAGGG)n Simple_repeat Simple_repeat 1 180 0 324 83 0 0 chr1 261351893 261351941 -20841723 + (TTAGGG)n Simple_repeat Simple_repeat 2 49 0 2164 133 7 0 chr1 261352067 261352368 -20841296 + AluSp SINE Alu 2 304 -9 2930 179 148 30 chr1 261352462 261353570 -20840094 - pTR5 LTR ERV1 -1 2437 741 2259 119 0 0 chr1 261353850 261354145 -20839519 - AluSx SINE Alu -17 295 1 880 294 9 0 chr1 261354146 261354374 -20839290 - MIR SINE MIR -31 231 2 622 260 72 51 chr1 261354395 261354444 -20839220 - MIR SINE MIR 0 262 216 985 235 14 5 chr1 261354444 261354661 -20839003 + MER20 DNA MER1_type 1 219 0 622 260 72 51 chr1 261354661 261354865 -20838799 - MIR SINE MIR -46 216 3 1135 201 77 119 chr1 261354887 261354950 -20838714 - MLT1D LTR MaLR -6 499 435 1795 132 85 0 chr1 261354950 261355222 -20838442 + AluSx SINE Alu 1 295 -17 1135 201 77 119 chr1 261355222 261355636 -20838028 - MLT1D LTR MaLR -70 435 42 375 23 0 0 chr1 261355866 261355910 -20837754 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 286 119 12 chr1 261356491 261356575 -20837089 - L2 LINE L2 0 3313 3221 2114 101 14 3 chr1 261356871 261357158 -20836506 + AluSx SINE Alu 2 291 -21 1801 241 27 32 chr1 261357423 261357869 -20835795 + LTR31 LTR ERV1 75 519 -100 2013 210 74 71 chr1 261357869 261358421 -20835243 - MLT2B3 LTR ERVL 0 554 1 1801 241 27 32 chr1 261358421 261358498 -20835166 + LTR31 LTR ERV1 519 595 -24 992 172 6 17 chr1 261358961 261359135 -20834529 + FRAM SINE Alu 1 168 -8 2296 178 57 20 chr1 261359135 261359625 -20834039 + LTR54 LTR ERV1 3 510 0 1657 133 126 35 chr1 261360695 261360981 -20832683 + AluJb SINE Alu 1 312 0 1757 151 0 21 chr1 261361879 261362164 -20831500 - AluSg SINE Alu -9 301 23 973 214 120 25 chr1 261362224 261362499 -20831165 + L1M4 LINE L1 4677 4977 -1169 300 155 52 0 chr1 261362521 261362579 -20831085 - FLAM SINE Alu 0 133 73 1189 118 12 0 chr1 261362972 261363142 -20830522 - AluSq SINE Alu -141 172 1 1912 202 48 65 chr1 261363544 261364063 -20829601 - LTR8 LTR ERV1 0 691 182 773 219 0 44 chr1 261364062 261364267 -20829397 - LTR8 LTR ERV1 -438 253 58 * 216 248 223 33 chr1 261366484 261366605 -20827059 - MIR SINE MIR 0 262 119 201 196 0 0 chr1 261367055 261367101 -20826563 + (TG)n Simple_repeat Simple_repeat 2 47 0 1630 213 21 6 chr1 261368292 261368630 -20825034 - MLT1A1 LTR MaLR -22 343 1 272 260 87 10 chr1 261368708 261368812 -20824852 - MLT1G LTR MaLR -469 121 10 1388 144 72 16 chr1 261371374 261371624 -20822040 - AluSx SINE Alu -16 296 33 1067 246 102 42 chr1 261371626 261372125 -20821539 - MER74B LTR ERVL -19 603 75 1666 174 36 4 chr1 261372656 261372952 -20820712 + AluJo SINE Alu 1 305 0 252 214 19 19 chr1 261373103 261373206 -20820458 + CT-rich Low_complexity Low_complexity 4 106 0 3089 156 29 4 chr1 261374261 261374786 -20818878 - L1MB3 LINE L1 0 6183 5646 2189 104 119 26 chr1 261374787 261375172 -20818492 + MSTA LTR MaLR 2 422 -6 1963 119 0 31 chr1 261375747 261376033 -20817631 + AluSg1 SINE Alu 1 277 -32 294 29 0 0 chr1 261376033 261376068 -20817596 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 233 324 85 40 chr1 261376155 261376331 -20817333 - MIR3 SINE MIR -2 206 23 201 195 0 0 chr1 261378994 261379035 -20814629 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 702 82 0 0 chr1 261380058 261380155 -20813509 + L1P LINE L1 3 99 -6047 * 6629 52 0 0 chr1 261380152 261381016 -20812648 + L1P LINE L1 1094 1957 -4189 1761 151 51 13 chr1 261381735 261382047 -20811617 - MER1B DNA MER1_type -15 324 1 196 315 63 24 chr1 261382050 261382177 -20811487 + MIR3 SINE MIR 14 145 -63 185 204 108 86 chr1 261383613 261383706 -20809958 - MIR3 SINE MIR -29 179 85 783 151 0 0 chr1 261383893 261384019 -20809645 - L1MA6 LINE L1 -164 6136 6011 443 299 22 7 chr1 261384344 261384481 -20809183 + L2 LINE L2 3163 3301 -12 288 193 36 60 chr1 261385036 261385119 -20808545 + MER74A LTR ERVL 2 82 -476 922 261 71 54 chr1 261385290 261385658 -20808006 + MER74B LTR ERVL 156 529 -93 36 26 0 0 chr1 261385790 261385828 -20807836 + AT_rich Low_complexity Low_complexity 1 38 0 1621 233 10 0 chr1 261386778 261387185 -20806479 - L1 LINE L1 -788 5358 4948 210 264 168 40 chr1 261388083 261388208 -20805456 + MIR3 SINE MIR 4 144 -64 2182 101 3 0 chr1 261391050 261391337 -20802327 + AluSp SINE Alu 17 304 -9 383 299 28 57 chr1 261391971 261392148 -20801516 + L1MC/D LINE L1 5319 5490 -2318 230 353 18 24 chr1 261392161 261392328 -20801336 - MLT1J LTR MaLR -19 492 327 7286 113 11 30 chr1 261392626 261393808 -20799856 - HSMAR1 DNA Mariner 0 1287 128 2294 103 63 20 chr1 261394666 261395015 -20798649 - THE1B LTR MaLR 0 364 1 263 323 129 8 chr1 261396466 261396590 -20797074 + MER5B DNA MER1_type 7 145 -33 255 245 28 85 chr1 261396824 261396930 -20796734 - MIR SINE MIR -70 192 93 297 277 58 51 chr1 261396934 261397071 -20796593 - L2 LINE L2 0 3313 3176 734 269 76 10 chr1 261398182 261398483 -20795181 - MER67D LTR ERV1 0 514 194 335 339 100 21 chr1 261399293 261399582 -20794082 - L2 LINE L2 -19 3294 2983 1872 156 3 10 chr1 261400391 261400693 -20792971 + AluSg SINE Alu 10 309 -1 794 239 6 0 chr1 261401597 261401773 -20791891 - MLT1A1 LTR MaLR -2 363 187 1938 162 14 0 chr1 261401776 261402122 -20791542 - L1PA16 LINE L1 -321 5845 5495 1302 241 20 22 chr1 261403511 261403917 -20789747 - L1 LINE L1 -788 5358 4954 2004 125 14 11 chr1 261404514 261404794 -20788870 + AluSx SINE Alu 22 302 -10 2376 73 3 58 chr1 261404900 261405229 -20788435 - AluY SINE Alu 0 311 1 1802 181 7 0 chr1 261405540 261405833 -20787831 - AluJo SINE Alu -17 295 1 2302 108 0 3 chr1 261405907 261406204 -20787460 - AluSx SINE Alu -16 296 1 2140 131 0 16 chr1 261406292 261406598 -20787066 - AluSx SINE Alu -11 301 1 678 129 0 0 chr1 261406630 261406723 -20786941 + AluS SINE Alu 2 94 -219 516 215 25 13 chr1 261406824 261406982 -20786682 - L1PA16 LINE L1 -740 5426 5267 261 250 50 79 chr1 261408972 261409112 -20784552 - MER54B LTR ERVL -317 476 341 1099 263 17 36 chr1 261409308 261409722 -20783942 - L1 LINE L1 -786 5360 4955 234 291 0 0 chr1 261409723 261409809 -20783855 + L1MA9 LINE L1 6225 6310 -2 259 329 24 12 chr1 261410681 261410766 -20782898 + MIR3 SINE MIR 82 167 -41 395 141 42 0 chr1 261410779 261410850 -20782814 + MER41B LTR ERV1 476 549 -86 829 268 148 16 chr1 261413261 261413814 -20779850 - L2 LINE L2 -198 3115 2485 286 75 0 0 chr1 261414479 261414519 -20779145 - Alu SINE Alu -262 40 1 263 254 30 15 chr1 261414870 261414937 -20778727 + L2 LINE L2 3205 3272 0 243 341 65 24 chr1 261414971 261415012 -20778652 - L2 LINE L2 -5 3267 3229 2198 122 7 0 chr1 261415012 261415328 -20778336 - AluSg SINE Alu 0 318 1 243 341 65 24 chr1 261415328 261415407 -20778257 - L2 LINE L2 -43 3229 3140 554 247 142 26 chr1 261415408 261415598 -20778066 + MIR SINE MIR 14 225 -37 1529 189 58 4 chr1 261415603 261415862 -20777802 + AluJo SINE Alu 1 273 -39 737 282 24 5 chr1 261416009 261416222 -20777442 + Charlie8 DNA MER1_type 46 262 -2155 2362 107 0 0 chr1 261416306 261416606 -20777058 + AluSq SINE Alu 1 300 -13 2167 153 8 27 chr1 261416663 261416882 -20776782 - MLT1A1 LTR MaLR 0 365 154 1616 164 64 4 chr1 261416882 261417162 -20776502 - AluJb SINE Alu -15 297 1 2167 153 8 27 chr1 261417162 261417314 -20776350 - MLT1A1 LTR MaLR -211 154 1 324 263 191 28 chr1 261417437 261417795 -20775869 - L2 LINE L2 -289 2983 2554 2119 136 0 7 chr1 261418093 261418401 -20775263 - AluJo SINE Alu -6 306 1 1921 156 3 0 chr1 261418641 261418930 -20774734 + AluSx SINE Alu 1 290 -22 505 174 0 51 chr1 261419043 261419141 -20774523 - AluJo SINE Alu -130 182 90 1419 75 6 0 chr1 261419156 261419329 -20774335 + AluSg/x SINE Alu 119 292 -18 2132 122 17 0 chr1 261420229 261420525 -20773139 - AluSx SINE Alu -11 301 1 2460 66 26 3 chr1 261421991 261422295 -20771369 + AluSq SINE Alu 1 311 -2 224 351 70 29 chr1 261423539 261423710 -20769954 - L3 LINE CR1 -239 1338 1161 * 321 353 139 0 chr1 261423694 261423881 -20769783 + MIR SINE MIR 49 261 -1 515 300 53 69 chr1 261423920 261424167 -20769497 - L3 LINE CR1 -433 1144 902 2310 96 3 3 chr1 261424183 261424475 -20769189 + AluSp SINE Alu 1 292 -21 2237 122 0 0 chr1 261424503 261424798 -20768866 + AluSg SINE Alu 6 300 -10 235 250 16 0 chr1 261424978 261425042 -20768622 - MIR SINE MIR -35 227 163 328 207 43 95 chr1 261425184 261425300 -20768364 + L1ME3A LINE L1 6060 6169 -1 2418 103 0 0 chr1 261425326 261425626 -20768038 + AluSx SINE Alu 3 302 -10 284 309 58 36 chr1 261426174 261426313 -20767351 + MIR SINE MIR 121 262 0 1755 163 10 3 chr1 261426556 261426851 -20766813 + AluJo SINE Alu 1 297 -15 200 241 21 135 chr1 261426861 261426942 -20766722 + L2 LINE L2 2722 2782 -532 2068 131 10 0 chr1 261426942 261427233 -20766431 + AluSx SINE Alu 1 294 -18 200 241 21 135 chr1 261427233 261427292 -20766372 + L2 LINE L2 2782 2846 -468 503 179 0 27 chr1 261427892 261428004 -20765660 + AluSp/q SINE Alu 198 306 -7 634 271 0 0 chr1 261428257 261428390 -20765274 + FLAM_A SINE Alu 1 133 0 1377 166 30 68 chr1 261428495 261428814 -20764850 + AluJb SINE Alu 1 308 0 1453 197 17 27 chr1 261428820 261429114 -20764550 + AluJb SINE Alu 6 296 -16 358 274 94 26 chr1 261429116 261429233 -20764431 + L1ME4a LINE L1 5990 6114 -7 2156 131 3 10 chr1 261429578 261429892 -20763772 - AluSx SINE Alu 0 312 1 301 304 0 0 chr1 261430208 261430277 -20763387 + HAL1 LINE L1 2 70 -2437 2370 98 0 3 chr1 261430312 261430619 -20763045 + AluSx SINE Alu 1 306 -6 2092 107 37 7 chr1 261430652 261430951 -20762713 + AluSx SINE Alu 5 312 0 665 249 91 42 chr1 261430968 261431233 -20762431 + HAL1 LINE L1 1536 1813 -694 326 290 183 15 chr1 261431314 261431445 -20762219 + HAL1 LINE L1 2060 2212 -295 21 0 0 0 chr1 261431473 261431494 -20762170 + AT_rich Low_complexity Low_complexity 1 21 0 452 276 0 53 chr1 261431501 261431653 -20762011 + HAL1 LINE L1 2333 2476 -31 656 178 274 5 chr1 261431740 261431959 -20761705 + MLT1D LTR MaLR 2 279 -226 2368 85 3 16 chr1 261431975 261432280 -20761384 + AluSg SINE Alu 1 301 -9 394 240 88 16 chr1 261432293 261432418 -20761246 + MLT1D LTR MaLR 349 482 -23 279 173 0 0 chr1 261432430 261432482 -20761182 + MER90 LTR ERV1 520 571 -4 180 0 0 0 chr1 261432995 261433015 -20760649 + (T)n Simple_repeat Simple_repeat 1 20 0 1778 107 12 8 chr1 261433073 261433326 -20760338 - AluY SINE Alu -57 254 1 326 111 0 48 chr1 261433554 261433578 -20760086 + MLT1D LTR MaLR 454 478 -27 1928 144 7 17 chr1 261433578 261433877 -20759787 - AluJb SINE Alu -16 296 1 326 111 0 48 chr1 261433877 261433928 -20759736 + MLT1D LTR MaLR 478 503 -2 2599 49 0 16 chr1 261434119 261434426 -20759238 + AluY SINE Alu 1 302 -9 2096 112 0 24 chr1 261434650 261434944 -20758720 - AluY SINE Alu -24 287 1 2192 99 34 0 chr1 261435075 261435367 -20758297 + AluSp SINE Alu 2 303 -10 2378 79 3 7 chr1 261435370 261435673 -20757991 + AluY SINE Alu 1 302 -9 693 165 0 0 chr1 261436153 261436262 -20757402 - AluSg/x SINE Alu -8 302 194 925 83 8 0 chr1 261436262 261436383 -20757281 - AluSg/x SINE Alu -15 297 176 23 0 0 0 chr1 261437483 261437506 -20756158 + AT_rich Low_complexity Low_complexity 1 23 0 220 191 24 0 chr1 261437999 261438041 -20755623 + (CGG)n Simple_repeat Simple_repeat 2 44 0 261 264 85 57 chr1 261438601 261438707 -20754957 - MIR SINE MIR -70 192 84 661 217 111 9 chr1 261438710 261438927 -20754737 - MER69 DNA AcHobo -2 2524 2286 940 163 60 50 chr1 261439021 261439104 -20754560 - MER69 DNA AcHobo -231 2295 2214 2232 103 10 7 chr1 261439104 261439414 -20754250 - AluSx SINE Alu 0 312 2 940 163 60 50 chr1 261439414 261439613 -20754051 - MER69 DNA AcHobo -312 2214 2010 * 979 275 63 32 chr1 261439610 261439676 -20753988 - MER69 DNA AcHobo -1581 945 883 2541 54 0 3 chr1 261439676 261439974 -20753690 - AluY SINE Alu -14 297 1 979 275 63 32 chr1 261439974 261440285 -20753379 - MER69 DNA AcHobo -1643 883 556 1991 222 120 2 chr1 261440720 261441229 -20752435 - MER69 DNA AcHobo -1956 570 2 22 70 0 0 chr1 261441518 261441561 -20752103 + AT_rich Low_complexity Low_complexity 1 43 0 1174 155 11 0 chr1 261441624 261441805 -20751859 + AluSg/x SINE Alu 123 305 -5 1888 163 7 0 chr1 261441962 261442257 -20751407 + AluJo SINE Alu 6 302 -10 526 193 160 0 chr1 261442314 261442444 -20751220 - MER5A DNA MER1_type -32 157 4 461 175 67 0 chr1 261442469 261442589 -20751075 - L1MA10 LINE L1 -12 6322 6195 2552 56 0 3 chr1 261442695 261442998 -20750666 - AluY SINE Alu -9 302 1 423 90 0 0 chr1 261443127 261443194 -20750470 + MER41B LTR ERV1 481 547 -88 1269 93 6 0 chr1 261443214 261443375 -20750289 - AluSg/x SINE Alu -14 298 137 205 212 30 61 chr1 261443887 261443953 -20749711 - L2 LINE L2 -10 3303 3240 622 98 0 0 chr1 261444957 261445039 -20748625 + AluSp/q SINE Alu 218 299 -14 2396 63 0 17 chr1 261445078 261445407 -20748257 + AluY SINE Alu 1 324 0 1473 78 0 0 chr1 261445409 261445589 -20748075 + AluSg/x SINE Alu 133 312 0 24 0 0 0 chr1 261445894 261445918 -20747746 + AT_rich Low_complexity Low_complexity 1 24 0 506 195 80 0 chr1 261447083 261447196 -20746468 + MER3 DNA MER1_type 88 209 0 2455 60 0 0 chr1 261447226 261447531 -20746133 - AluY SINE Alu 0 305 1 2091 128 13 22 chr1 261447539 261447852 -20745812 - AluJb SINE Alu -2 310 1 2216 113 0 0 chr1 261447972 261448282 -20745382 - AluSx SINE Alu 0 310 1 1037 163 6 18 chr1 261448348 261448514 -20745150 + FRAM SINE Alu 1 159 -17 2120 131 10 10 chr1 261448842 261449154 -20744510 - AluSq SINE Alu -1 312 1 2711 244 56 58 chr1 261449816 261449934 -20743730 + L1MC5 LINE L1 6675 6792 -1169 2281 127 0 0 chr1 261449934 261450242 -20743422 + AluSx SINE Alu 1 308 -4 2711 244 56 58 chr1 261450242 261451364 -20742300 + L1MC5 LINE L1 6792 7913 -48 2427 48 3 24 chr1 261452579 261452905 -20740759 + AluY SINE Alu 1 320 0 213 115 39 19 chr1 261453402 261453454 -20740210 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 824 142 16 0 chr1 261453458 261453585 -20740079 + FLAM_C SINE Alu 1 129 -4 277 367 77 34 chr1 261454468 261454675 -20738989 + L2 LINE L2 3057 3272 0 213 0 36 0 chr1 261454801 261454829 -20738835 + (TTA)n Simple_repeat Simple_repeat 2 180 0 343 127 0 18 chr1 261454829 261454879 -20738785 - AluSq SINE Alu -14 284 235 1485 97 0 0 chr1 261454879 261455065 -20738599 - AluSq SINE Alu -127 186 1 297 271 0 0 chr1 261455081 261455151 -20738513 + MIR SINE MIR 73 142 -120 1714 136 52 39 chr1 261455185 261455471 -20738193 - AluJo SINE Alu -21 291 2 244 273 30 0 chr1 261456560 261456626 -20737038 + MIR SINE MIR 86 153 -55 720 211 12 25 chr1 261456626 261456787 -20736877 + MER5B DNA MER1_type 3 161 -17 355 288 70 14 chr1 261458141 261458354 -20735310 - MIR SINE MIR -32 230 5 1689 132 113 0 chr1 261458635 261458901 -20734763 - AluSg SINE Alu -14 296 1 340 228 50 20 chr1 261459020 261459121 -20734543 - L2 LINE L2 -7 3306 3203 828 206 14 7 chr1 261459318 261459464 -20734200 + FRAM SINE Alu 1 146 -30 2154 109 3 3 chr1 261459464 261459758 -20733906 - AluSx SINE Alu -18 294 1 971 157 24 6 chr1 261459762 261459960 -20733704 - L1MB8 LINE L1 -256 5922 5740 255 172 27 116 chr1 261459968 261460064 -20733600 - MIR SINE MIR -102 106 14 338 260 0 0 chr1 261460311 261460384 -20733280 + L1ME4a LINE L1 5754 5826 -295 1933 145 3 10 chr1 261460386 261460683 -20732981 + AluJb SINE Alu 1 295 -17 2097 149 3 0 chr1 261460787 261461095 -20732569 - AluSx SINE Alu -3 309 1 1352 112 31 49 chr1 261461104 261461267 -20732397 - AluSg/x SINE Alu -10 300 136 2229 99 10 7 chr1 261461267 261461571 -20732093 - AluSg SINE Alu -5 305 1 2233 121 0 0 chr1 261461571 261461869 -20731795 - AluSx SINE Alu -14 298 1 1352 112 31 49 chr1 261461869 261461927 -20731737 - AluSg/x SINE Alu -172 138 82 912 140 88 47 chr1 261461930 261462101 -20731563 + AluJb SINE Alu 104 281 -31 243 61 0 0 chr1 261462105 261462138 -20731526 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 22 80 0 0 chr1 261462266 261462316 -20731348 + AT_rich Low_complexity Low_complexity 1 50 0 1759 167 7 33 chr1 261462319 261462618 -20731046 - AluJb SINE Alu -21 291 1 74 90 0 0 chr1 261462627 261462827 -20730837 + AT_rich Low_complexity Low_complexity 1 200 0 697 229 170 5 chr1 261463322 261463540 -20730124 + MER20B DNA MER1_type 83 336 -447 947 218 125 7 chr1 261463610 261463890 -20729774 + MER20B DNA MER1_type 468 780 -3 230 180 0 40 chr1 261463941 261463991 -20729673 + L2 LINE L2 3264 3311 -2 2197 129 0 3 chr1 261464068 261464371 -20729293 - AluJb SINE Alu -10 302 1 254 346 37 0 chr1 261464583 261464664 -20729000 - L2 LINE L2 0 3272 3189 1907 102 0 111 chr1 261464732 261465065 -20728599 + AluSx SINE Alu 1 296 -16 1910 169 0 13 chr1 261465285 261465598 -20728066 + AluJb SINE Alu 1 309 -3 574 240 104 0 chr1 261465599 261465753 -20727911 - L1MC4a LINE L1 -1897 5911 5742 247 225 153 9 chr1 261465950 261466061 -20727603 + L1ME4a LINE L1 5995 6121 0 749 250 85 18 chr1 261466273 261466497 -20727167 - MIR SINE MIR -3 259 21 1486 184 0 0 chr1 261466665 261466910 -20726754 + AluJo SINE Alu 36 280 -32 599 208 11 11 chr1 261466915 261467093 -20726571 + GA-rich Low_complexity Low_complexity 3 180 0 201 195 0 0 chr1 261467088 261467129 -20726535 + A-rich Low_complexity Low_complexity 1 41 0 * 497 250 17 0 chr1 261467372 261467488 -20726176 + L1ME LINE L1 5650 5767 -399 2162 64 0 47 chr1 261467521 261467873 -20725791 - AluY SINE Alu 0 338 1 782 178 16 0 chr1 261467893 261468022 -20725642 - FLAM_C SINE Alu 0 133 3 211 293 47 38 chr1 261468068 261468094 -20725570 + MIR SINE MIR 122 146 -116 2078 130 0 10 chr1 261468094 261468395 -20725269 + AluSx SINE Alu 1 298 -14 211 293 47 38 chr1 261468395 261468474 -20725190 + MIR SINE MIR 146 228 -34 222 193 175 0 chr1 261468513 261468570 -20725094 - L3 LINE CR1 -175 1402 1336 2121 130 0 10 chr1 261468621 261468921 -20724743 - AluSx SINE Alu -15 297 1 280 304 29 29 chr1 261468923 261469025 -20724639 - L2 LINE L2 -9 3304 3203 183 243 81 40 chr1 261469142 261469216 -20724448 + L2 LINE L2 3008 3084 -188 2204 114 3 0 chr1 261469277 261469574 -20724090 - AluSx SINE Alu -14 298 1 813 186 75 0 chr1 261469594 261469782 -20723882 - MER69 DNA AcHobo -211 2315 2114 2338 73 7 10 chr1 261470200 261470503 -20723161 + AluY SINE Alu 1 302 -9 488 183 67 0 chr1 261470610 261470730 -20722934 + L1MA10 LINE L1 6195 6322 -12 2402 77 6 6 chr1 261470899 261471210 -20722454 - AluY SINE Alu 0 311 1 3793 174 157 162 chr1 261471212 261471333 -20722331 - L1MCa LINE L1 -3888 2719 2599 1497 150 120 11 chr1 261471333 261471600 -20722064 - AluSg1 SINE Alu -13 296 1 1600 135 51 15 chr1 261471604 261471917 -20721747 - AluJb SINE Alu 0 323 1 3793 174 157 162 chr1 261471917 261472569 -20721095 - L1MCa LINE L1 -4011 2596 1942 2225 108 14 0 chr1 261472569 261472864 -20720800 + AluSx SINE Alu 1 299 -13 3793 174 157 162 chr1 261472864 261472962 -20720702 - L1MCa LINE L1 -4665 1942 1845 2405 66 3 0 chr1 261472962 261473249 -20720415 + AluY SINE Alu 1 288 -23 3793 174 157 162 chr1 261473249 261473265 -20720399 - L1MCa LINE L1 -4762 1845 1830 666 231 8 0 chr1 261473265 261473399 -20720265 - FLAM_C SINE Alu -6 137 3 3793 174 157 162 chr1 261473399 261473575 -20720089 - L1MCa LINE L1 -4777 1830 1655 800 165 0 0 chr1 261473575 261473708 -20719956 - FLAM_C SINE Alu 0 143 11 3793 174 157 162 chr1 261473708 261474886 -20718778 - L1MCa LINE L1 -4952 1655 119 2597 53 0 0 chr1 261474886 261475188 -20718476 - AluY SINE Alu -9 302 1 3793 174 157 162 chr1 261475188 261475305 -20718359 - L1MCa LINE L1 -6488 119 3 568 194 31 0 chr1 261475543 261475641 -20718023 + AluJ/FLAM SINE Alu 2 102 -210 1268 138 5 10 chr1 261475648 261475844 -20717820 + AluJo SINE Alu 65 259 -53 2169 130 3 0 chr1 261475881 261476180 -20717484 - AluSx SINE Alu -12 300 1 1803 144 39 18 chr1 261476215 261476500 -20717164 + AluSx SINE Alu 1 291 -21 2119 124 6 16 chr1 261476518 261476833 -20716831 - AluJo SINE Alu 0 312 1 2077 101 25 0 chr1 261476837 261477123 -20716541 - AluSq SINE Alu -20 293 1 254 183 110 49 chr1 261477147 261477229 -20716435 - L1MC5 LINE L1 -272 7689 7603 493 214 87 61 chr1 261477247 261477476 -20716188 - L1MC5 LINE L1 -477 7484 7250 1447 156 7 93 chr1 261477476 261477833 -20715831 - AluJb SINE Alu 0 339 9 307 161 0 0 chr1 261477849 261477905 -20715759 - L1MC5 LINE L1 -723 7238 7183 342 248 92 52 chr1 261477946 261478099 -20715565 - L1MC4 LINE L1 -769 7068 6858 2003 120 10 37 chr1 261478153 261478286 -20715378 + AluSx SINE Alu 2 137 -175 2259 101 7 0 chr1 261478286 261478583 -20715081 + AluSq SINE Alu 1 299 -14 2003 120 10 37 chr1 261478583 261478749 -20714915 + AluSx SINE Alu 137 293 -19 769 197 36 0 chr1 261479105 261479242 -20714422 + FRAM SINE Alu 6 147 -29 2103 96 60 0 chr1 261479627 261479909 -20713755 - AluSx SINE Alu -13 299 1 442 289 77 0 chr1 261480018 261480174 -20713490 + MER117 DNA MER1_type 4 171 -26 181 352 45 23 chr1 261480323 261480411 -20713253 - MIR SINE MIR -87 121 32 313 214 0 0 chr1 261480801 261480857 -20712807 - MER101 LTR ERV1 -60 414 359 302 225 302 0 chr1 261481176 261481305 -20712359 - L1MC4 LINE L1 -2015 5793 5626 290 300 18 18 chr1 261481709 261481819 -20711845 + L1ME LINE L1 141 250 -5955 2176 131 0 6 chr1 261481839 261482151 -20711513 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr1 261482404 261482432 -20711232 + AT_rich Low_complexity Low_complexity 1 28 0 630 283 88 76 chr1 261482522 261482999 -20710665 + L1ME LINE L1 914 1409 -4987 2363 74 6 35 chr1 261482999 261483310 -20710354 - AluY SINE Alu -9 302 1 630 283 88 76 chr1 261483310 261483730 -20709934 + L1ME LINE L1 1409 1822 -4574 1544 132 0 25 chr1 261483970 261484213 -20709451 + AluSx SINE Alu 58 294 -18 813 178 75 0 chr1 261484224 261484370 -20709294 + AluJo SINE Alu 126 282 -30 286 247 158 0 chr1 261484399 261484513 -20709151 + L1ME LINE L1 5459 5590 -531 1008 143 60 42 chr1 261484527 261484743 -20708921 + MER39B LTR ERV1 434 653 0 590 251 82 6 chr1 261484748 261484919 -20708745 + L1ME LINE L1 5576 5759 -2049 258 264 0 14 chr1 261484913 261484985 -20708679 + L1P4 LINE L1 5517 5587 -578 * 359 206 52 31 chr1 261485025 261485122 -20708542 + L1ME LINE L1 5678 5776 -345 305 242 39 98 chr1 261485199 261485352 -20708312 + MARNA DNA Mariner 177 320 -266 1972 114 0 4 chr1 261485354 261485627 -20708037 - AluSx SINE Alu -5 307 36 2174 104 3 0 chr1 261485634 261485921 -20707743 + AluSx SINE Alu 1 288 -24 2477 82 0 3 chr1 261486090 261486395 -20707269 - AluSx SINE Alu -8 304 1 334 268 39 8 chr1 261486489 261486616 -20707048 - L1MC/D LINE L1 -2319 5489 5359 2941 102 39 5 chr1 261486682 261487113 -20706551 - Tigger2 DNA MER2_type 0 2718 2273 324 178 0 123 chr1 261487157 261487230 -20706434 - Tigger2 DNA MER2_type -2653 65 2 317 287 157 22 chr1 261487233 261487463 -20706201 - L1MC/D LINE L1 -1009 5137 4877 254 234 234 0 chr1 261487581 261487718 -20705946 - L1MC/D LINE L1 -1330 4816 4648 2589 54 0 0 chr1 261487933 261488231 -20705433 - AluY SINE Alu -13 298 1 187 302 274 28 chr1 261488242 261488563 -20705101 - L3 LINE CR1 -832 745 346 375 158 32 74 chr1 261488860 261488955 -20704709 + MIR SINE MIR 127 217 -45 1136 142 0 0 chr1 261488955 261489117 -20704547 + FRAM SINE Alu 1 158 -18 2151 133 0 3 chr1 261489119 261489421 -20704243 + AluSx SINE Alu 1 301 -11 761 182 8 0 chr1 261489431 261489563 -20704101 + FLAM_A SINE Alu 1 133 0 512 231 82 0 chr1 261489629 261489763 -20703901 + MIR3 SINE MIR 63 207 -1 1092 251 31 8 chr1 261490056 261490311 -20703353 - MIR SINE MIR 0 262 2 1642 169 39 26 chr1 261491150 261491458 -20702206 - AluJo SINE Alu 0 312 1 2292 98 0 16 chr1 261491836 261492142 -20701522 - AluSx SINE Alu -11 301 1 2422 89 3 0 chr1 261492153 261492456 -20701208 - AluSp SINE Alu -8 305 2 372 255 91 89 chr1 261492719 261493479 -20700185 + L1MA7 LINE L1 5561 6012 -279 2212 217 35 31 chr1 261492771 261493052 -20700612 + L1ME3A LINE L1 5613 5899 -271 2477 42 0 7 chr1 261493052 261493363 -20700301 + AluY SINE Alu 2 310 0 2212 217 35 31 chr1 261493363 261493623 -20700041 + L1ME3A LINE L1 5899 6157 -13 1056 219 90 34 chr1 261493639 261493999 -20699665 + L1MC4a LINE L1 5671 5822 -346 805 189 77 81 chr1 261494039 261494138 -20699526 + L1MC4a LINE L1 6205 6303 -1505 1480 132 68 0 chr1 261494138 261494357 -20699307 + MER46A DNA MER2_type 2 235 -1 805 189 77 81 chr1 261494357 261494463 -20699201 + L1MC4a LINE L1 6303 6411 -1397 2194 99 38 0 chr1 261494463 261494755 -20698909 - AluSq SINE Alu -9 304 2 805 189 77 81 chr1 261494755 261494808 -20698856 + L1MC4a LINE L1 6411 6463 -1345 802 61 20 0 chr1 261494814 261494913 -20698751 + AluSg/x SINE Alu 200 300 -12 4096 206 66 12 chr1 261494917 261495900 -20697764 + L1MC4a LINE L1 6470 7505 -303 664 237 47 28 chr1 261495888 261496103 -20697561 + L1MC4 LINE L1 7824 8042 0 * 21 57 0 0 chr1 261497136 261497171 -20696493 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr1 261497897 261497926 -20695738 + AT_rich Low_complexity Low_complexity 1 29 0 2065 121 47 10 chr1 261498964 261499261 -20694403 - AluSx SINE Alu -4 308 1 270 270 128 13 chr1 261499433 261499654 -20694010 + MARNA DNA Mariner 91 392 -194 712 277 134 26 chr1 261499667 261500297 -20693367 + L2 LINE L2 2542 3310 -3 395 301 6 45 chr1 261500299 261500455 -20693209 + MARNA DNA Mariner 413 562 -24 455 282 109 0 chr1 261500523 261500679 -20692985 + MIR SINE MIR 48 220 -42 1656 179 4 4 chr1 261501151 261501294 -20692370 - AluJo SINE Alu -32 280 135 2314 96 10 0 chr1 261501294 261501596 -20692068 - AluSx SINE Alu -7 305 1 1656 179 4 4 chr1 261501596 261501732 -20691932 - AluJo SINE Alu -176 136 1 266 0 0 29 chr1 261501958 261501993 -20691671 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 267 341 41 5 chr1 261502005 261502225 -20691439 + L1P LINE L1 2285 2512 -3634 1504 206 104 25 chr1 261502314 261502606 -20691058 + L1ME LINE L1 2616 2954 -3192 2384 87 7 0 chr1 261502606 261502906 -20690758 + AluSx SINE Alu 1 302 -10 1504 206 104 25 chr1 261502906 261503044 -20690620 + L1ME LINE L1 2954 3080 -3066 606 227 23 16 chr1 261503057 261503185 -20690479 + FLAM_C SINE Alu 1 129 -14 2287 99 0 7 chr1 261503228 261503532 -20690132 + AluSx SINE Alu 1 302 -10 662 139 0 0 chr1 261503533 261503619 -20690045 + AluS SINE Alu 2 87 -225 816 248 140 40 chr1 261503674 261503801 -20689863 + L1ME LINE L1 5257 5370 -792 2309 108 3 0 chr1 261503801 261504107 -20689557 - AluSx SINE Alu -5 307 1 816 248 140 40 chr1 261504107 261504378 -20689286 + L1ME LINE L1 5370 5695 -467 763 156 14 35 chr1 261504378 261504519 -20689145 - FRAM SINE Alu -7 169 32 30 0 0 0 chr1 261504527 261504557 -20689107 + AT_rich Low_complexity Low_complexity 1 30 0 2190 123 0 3 chr1 261504584 261504886 -20688778 - AluSx SINE Alu -11 301 1 2640 42 0 13 chr1 261505099 261505412 -20688252 + AluY SINE Alu 1 309 -2 1019 107 20 7 chr1 261505571 261505720 -20687944 + AluSq/x SINE Alu 1 151 -162 2369 76 3 7 chr1 261505722 261506025 -20687639 + AluSq SINE Alu 11 312 -1 2181 127 10 7 chr1 261506033 261506340 -20687324 + AluJb SINE Alu 5 312 0 1116 151 0 0 chr1 261506554 261506720 -20686944 - AluSg/x SINE Alu -12 298 133 2539 57 0 0 chr1 261506733 261507032 -20686632 - AluY SINE Alu -12 299 1 225 0 0 0 chr1 261508895 261508920 -20684744 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2137 129 0 0 chr1 261509955 261510250 -20683414 - AluSg SINE Alu -15 295 1 297 109 0 0 chr1 261510321 261510367 -20683297 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 224 345 0 0 chr1 261510372 261510430 -20683234 - L2 LINE L2 -24 3248 3191 1586 158 42 24 chr1 261511107 261511443 -20682221 + L1MC3 LINE L1 7444 7785 0 2438 84 0 0 chr1 261512290 261512587 -20681077 - AluSx SINE Alu -15 297 1 2146 141 0 3 chr1 261512597 261512910 -20680754 - AluJb SINE Alu 0 312 1 1571 166 12 68 chr1 261513114 261513439 -20680225 - AluJo SINE Alu -3 309 3 2504 73 0 0 chr1 261513445 261513745 -20679919 - AluSg SINE Alu -10 300 1 2252 96 3 3 chr1 261514794 261515087 -20678577 + AluSg SINE Alu 1 293 -17 250 323 140 30 chr1 261516483 261516718 -20676946 + L2 LINE L2 2958 3218 -54 1600 192 186 23 chr1 261516839 261517281 -20676383 + MLT1F LTR MaLR 1 514 -28 898 139 67 24 chr1 261517283 261517448 -20676216 - FRAM SINE Alu -10 166 1 21 0 0 0 chr1 261517463 261517484 -20676180 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 261518090 261518121 -20675543 + AT_rich Low_complexity Low_complexity 1 31 0 2288 107 3 0 chr1 261518203 261518502 -20675162 + AluSq SINE Alu 1 300 -13 1244 231 65 18 chr1 261519102 261519501 -20674163 - L1ME3A LINE L1 -13 6157 5740 210 71 0 0 chr1 261519577 261519605 -20674059 + (CA)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr1 261520175 261520202 -20673462 + AT_rich Low_complexity Low_complexity 1 27 0 2246 114 3 0 chr1 261520310 261520607 -20673057 - AluSp SINE Alu -15 298 1 1872 161 0 10 chr1 261520613 261520911 -20672753 - AluJo SINE Alu -17 295 1 284 225 63 133 chr1 261521515 261521725 -20671939 - MIR3 SINE MIR -70 192 2 684 209 252 5 chr1 261522687 261522893 -20670771 - MIR SINE MIR -1 261 5 2309 103 7 0 chr1 261523158 261523458 -20670206 - AluSx SINE Alu -9 303 2 2030 106 6 61 chr1 261524212 261524523 -20669141 - AluSq SINE Alu -19 294 1 222 298 35 21 chr1 261524616 261524757 -20668907 + CT-rich Low_complexity Low_complexity 5 147 0 350 328 52 0 chr1 261525122 261525238 -20668426 + L2 LINE L2 3134 3255 -17 1925 153 0 14 chr1 261525864 261526158 -20667506 - AluJb SINE Alu -14 298 9 2019 102 53 36 chr1 261526903 261527206 -20666458 + AluSq SINE Alu 1 308 -5 2122 150 0 0 chr1 261528228 261528534 -20665130 - AluSx SINE Alu -6 306 1 1299 175 112 19 chr1 261529225 261529494 -20664170 - AluJb SINE Alu -18 294 1 1888 165 3 7 chr1 261529548 261529845 -20663819 - AluJb SINE Alu -11 301 6 1541 143 9 0 chr1 261529935 261530158 -20663506 - AluJb SINE Alu -87 225 1 371 243 234 0 chr1 261530321 261530432 -20663232 + MIR SINE MIR 3 139 -123 270 311 66 40 chr1 261530853 261531081 -20662583 + L1MC/D LINE L1 5352 5585 -2223 1179 174 47 40 chr1 261531101 261531399 -20662265 - MER44D DNA MER2_type -39 570 1 292 319 71 22 chr1 261531404 261531586 -20662078 + L1MC/D LINE L1 5591 5781 -2027 1035 192 53 33 chr1 261531586 261531831 -20661833 + Tigger3(Golem) DNA MER2_type 1 250 -2779 2161 117 0 14 chr1 261531931 261532222 -20661442 - AluSx SINE Alu -21 291 5 743 285 107 0 chr1 261532225 261532636 -20661028 - L1M4 LINE L1 -1226 4920 4466 363 44 0 0 chr1 261532763 261532808 -20660856 + (TG)n Simple_repeat Simple_repeat 2 46 0 2191 104 33 0 chr1 261533269 261533568 -20660096 - AluSp SINE Alu -4 309 1 1689 166 0 0 chr1 261533588 261533841 -20659823 - AluSx SINE Alu -59 253 1 1463 150 98 8 chr1 261534035 261534289 -20659375 + AluSx SINE Alu 24 300 -12 368 326 43 39 chr1 261534589 261534819 -20658845 - L3 LINE CR1 -269 1308 1078 837 203 82 30 chr1 261534824 261535056 -20658608 - MIR SINE MIR -1 261 18 1487 151 12 32 chr1 261535140 261535391 -20658273 + AluJo SINE Alu 35 280 -32 1813 148 25 0 chr1 261535413 261535690 -20657974 + AluJb SINE Alu 1 284 -28 207 209 0 0 chr1 261535909 261535952 -20657712 + T-rich Low_complexity Low_complexity 1 43 0 1298 148 70 4 chr1 261536000 261536243 -20657421 + L1MD3 LINE L1 7730 7988 -7 24 91 0 0 chr1 261536344 261536410 -20657254 + AT_rich Low_complexity Low_complexity 1 66 0 885 285 68 26 chr1 261536554 261536810 -20656854 - L1MC/D LINE L1 -1985 5823 5579 1960 145 0 22 chr1 261536810 261537121 -20656543 + AluSx SINE Alu 1 304 -8 885 285 68 26 chr1 261537121 261537227 -20656437 - L1MC/D LINE L1 -2229 5579 5479 2688 42 0 0 chr1 261537227 261537537 -20656127 + AluY SINE Alu 1 310 -1 885 285 68 26 chr1 261537537 261537720 -20655944 - L1MC/D LINE L1 -2329 5479 5254 1845 164 3 7 chr1 261538205 261538504 -20655160 + AluJo SINE Alu 1 298 -14 207 0 0 0 chr1 261538509 261538532 -20655132 + (CA)n Simple_repeat Simple_repeat 2 24 0 2157 106 10 0 chr1 261538605 261538908 -20654756 - AluSg SINE Alu -3 307 2 244 159 87 58 chr1 261538944 261539013 -20654651 - L1MC/D LINE L1 -1487 4659 4589 390 254 160 77 chr1 261539122 261539472 -20654192 - L1MC/D LINE L1 -1686 4460 4082 2269 93 14 0 chr1 261539594 261539884 -20653780 + AluSx SINE Alu 1 294 -18 834 241 6 11 chr1 261541573 261541747 -20651917 + FAM SINE Alu 1 173 -2 22 56 0 0 chr1 261542503 261542539 -20651125 + AT_rich Low_complexity Low_complexity 1 36 0 833 309 94 60 chr1 261543038 261543125 -20650539 + L1MC4a LINE L1 4509 4592 -1554 2303 114 0 0 chr1 261543125 261543424 -20650240 - AluSx SINE Alu -13 299 1 833 309 94 60 chr1 261543424 261543897 -20649767 + L1MC4a LINE L1 4592 5107 -1039 1814 155 36 20 chr1 261543897 261544200 -20649464 - AluSx SINE Alu -4 308 1 833 309 94 60 chr1 261544200 261544438 -20649226 + L1MC4a LINE L1 5107 5335 -811 1487 168 50 46 chr1 261544440 261544743 -20648921 + AluJb SINE Alu 1 304 -8 748 219 14 0 chr1 261544744 261544890 -20648774 + AluJo/FRAM SINE Alu 134 281 -31 1099 281 57 39 chr1 261544909 261545016 -20648648 + L1MC4a LINE L1 5337 5441 -2367 2523 71 0 0 chr1 261545016 261545327 -20648337 - AluSx SINE Alu -1 311 1 1099 281 57 39 chr1 261545327 261545814 -20647850 + L1MC4a LINE L1 5441 5942 -1866 2224 117 3 3 chr1 261545874 261546183 -20647481 + AluSg SINE Alu 1 309 -1 3646 108 52 90 chr1 261546248 261547017 -20646647 - L1MA4 LINE L1 -3 6297 5558 2261 112 3 0 chr1 261547066 261547370 -20646294 - AluSc SINE Alu -4 305 1 1720 161 16 47 chr1 261548063 261548385 -20645279 - AluJb SINE Alu 0 312 1 1519 182 37 19 chr1 261548410 261548679 -20644985 - AluJo SINE Alu -38 274 1 1931 78 0 119 chr1 261548691 261549026 -20644638 - AluY SINE Alu -6 295 1 2119 128 0 0 chr1 261549026 261549324 -20644340 - AluSx SINE Alu -14 298 1 2396 93 0 0 chr1 261549408 261549719 -20643945 - AluSq SINE Alu -2 311 1 780 128 28 43 chr1 261549732 261549873 -20643791 + AluSg/x SINE Alu 159 297 -12 1008 155 5 31 chr1 261550629 261550822 -20642842 - AluJb SINE Alu -4 308 121 2154 117 0 31 chr1 261551813 261552130 -20641534 - AluSx SINE Alu -5 307 1 2347 85 10 3 chr1 261552145 261552452 -20641212 - AluSg SINE Alu -1 309 1 740 217 13 6 chr1 261552504 261552661 -20641003 + MER58 DNA MER1_type 1 158 -2262 956 248 73 54 chr1 261552843 261553540 -20640124 + L1MCc LINE L1 1346 2273 -4849 2292 107 17 0 chr1 261553733 261554031 -20639633 + AluSx SINE Alu 1 303 -9 882 192 52 0 chr1 261554069 261554241 -20639423 - MER5A DNA MER1_type -2 187 7 272 216 64 110 chr1 261554252 261554321 -20639343 + L1MCc LINE L1 2799 2870 -4252 1682 167 56 0 chr1 261554321 261554609 -20639055 + AluJb SINE Alu 1 304 -8 272 216 64 110 chr1 261554609 261554757 -20638907 + L1MCc LINE L1 2870 3006 -4116 635 152 0 19 chr1 261554758 261554863 -20638801 + AluJ SINE Alu 2 104 -208 2065 101 2 174 chr1 261554863 261555271 -20638393 - LTR14B LTR ERVK 0 608 7 1166 143 24 52 chr1 261555274 261555484 -20638180 + AluJo SINE Alu 95 298 -14 1875 233 39 51 chr1 261555486 261555510 -20638154 + L1MCc LINE L1 2961 2984 -3957 2150 109 10 26 chr1 261555510 261555814 -20637850 + AluSx SINE Alu 1 299 -13 1875 233 39 51 chr1 261555814 261556451 -20637213 + L1MCc LINE L1 2984 3614 -3327 21 57 0 0 chr1 261556929 261556964 -20636700 + AT_rich Low_complexity Low_complexity 1 35 0 1731 116 85 37 chr1 261557015 261557309 -20636355 - AluJb SINE Alu -4 308 1 664 159 159 16 chr1 261557311 261557493 -20636171 - L1M4b LINE L1 -5328 1531 1324 27 29 0 0 chr1 261557556 261557590 -20636074 + AT_rich Low_complexity Low_complexity 1 34 0 2158 83 7 17 chr1 261557640 261557929 -20635735 + AluSx SINE Alu 1 286 -26 282 275 101 34 chr1 261557938 261558087 -20635577 - L1M4b LINE L1 -5667 1188 1030 227 313 68 23 chr1 261558330 261558506 -20635158 - L1M4b LINE L1 -6656 203 20 3024 189 31 2 chr1 261558864 261559403 -20634261 - MER68 LTR ERV1 0 562 8 735 54 0 0 chr1 261560422 261560515 -20633149 - AluSg/x SINE Alu -9 301 209 310 206 10 82 chr1 261560534 261560631 -20633033 - L1MC4 LINE L1 -1339 6703 6614 2320 108 0 0 chr1 261560786 261561083 -20632581 + AluSq SINE Alu 1 297 -16 24 32 0 0 chr1 261561387 261561418 -20632246 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 261561769 261561791 -20631873 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr1 261561828 261561852 -20631812 + AT_rich Low_complexity Low_complexity 1 24 0 2237 73 52 0 chr1 261561889 261562176 -20631488 + AluSg SINE Alu 1 302 -8 1900 147 0 11 chr1 261562989 261563302 -20630362 - AluSx SINE Alu 0 310 1 260 70 23 0 chr1 261563441 261563484 -20630180 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1981 100 29 7 chr1 261563486 261563765 -20629899 - AluSx SINE Alu -27 285 1 183 80 0 0 chr1 261563765 261563790 -20629874 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1732 175 3 18 chr1 261563790 261564076 -20629588 - AluJb SINE Alu -30 282 1 7143 194 39 23 chr1 261564398 261566921 -20626743 - L1MC1 LINE L1 0 6333 3851 2614 61 0 3 chr1 261566921 261567233 -20626431 + AluY SINE Alu 1 311 0 7143 194 39 23 chr1 261567233 261567343 -20626321 - L1MC1 LINE L1 -2482 3851 3744 594 215 39 15 chr1 261567343 261567473 -20626191 - FLAM_A SINE Alu 0 133 1 7143 194 39 23 chr1 261567473 261568605 -20625059 - L1MC1 LINE L1 -2589 3744 2437 2067 118 38 0 chr1 261568605 261568892 -20624772 + AluSx SINE Alu 1 298 -14 7143 194 39 23 chr1 261568892 261568945 -20624719 - L1MC1 LINE L1 -3896 2437 2386 204 139 0 28 chr1 261569430 261569466 -20624198 + (CA)n Simple_repeat Simple_repeat 1 35 0 1551 192 20 3 chr1 261571410 261571702 -20621962 + AluJo SINE Alu 13 309 -3 3130 119 10 3 chr1 261572710 261573387 -20620277 - MER72 LTR ERV1 0 722 9 482 296 59 44 chr1 261573719 261573922 -20619742 + MLT1K LTR MaLR 144 349 -239 1898 134 50 17 chr1 261574453 261574752 -20618912 + AluJb SINE Alu 1 309 -3 2969 103 166 36 chr1 261575403 261575436 -20618228 - LTR24C LTR ERV1 0 635 608 1329 192 111 0 chr1 261575436 261575707 -20617957 - AluJo SINE Alu -11 301 1 2969 103 166 36 chr1 261575707 261575975 -20617689 - LTR24C LTR ERV1 -27 608 376 2215 114 0 3 chr1 261575975 261576272 -20617392 + AluSx SINE Alu 11 306 -6 2969 103 166 36 chr1 261576272 261576462 -20617202 - LTR24C LTR ERV1 -259 376 212 1772 141 35 3 chr1 261576462 261576746 -20616918 - AluSx SINE Alu -19 293 1 2969 103 166 36 chr1 261576746 261576814 -20616850 - LTR24C LTR ERV1 -423 212 1 328 282 0 0 chr1 261576852 261576937 -20616727 + MLT1L LTR MaLR 3 87 -528 5083 153 25 33 chr1 261576986 261577601 -20616063 - MER49 LTR ERV1 0 923 316 892 126 4 169 chr1 261577601 261577832 -20615832 - 7SK RNA RNA 0 193 1 5083 153 25 33 chr1 261577832 261578137 -20615527 - MER49 LTR ERV1 -607 316 10 2334 142 146 38 chr1 261578330 261578849 -20614815 + LTR49 LTR ERV1 1 622 0 944 157 0 19 chr1 261579566 261579725 -20613939 + AluJb SINE Alu 147 302 -10 638 155 155 9 chr1 261580198 261580314 -20613350 + FLAM_C SINE Alu 1 133 0 775 177 0 8 chr1 261580630 261580760 -20612904 + FLAM_C SINE Alu 1 129 -4 30 34 0 34 chr1 261580811 261580851 -20612813 + AT_rich Low_complexity Low_complexity 1 40 -17 316 94 19 0 chr1 261580851 261580904 -20612760 - L1MA5A LINE L1 -4 6293 6240 30 34 0 34 chr1 261580904 261580922 -20612742 + AT_rich Low_complexity Low_complexity 40 57 0 29 28 0 0 chr1 261580948 261580984 -20612680 + AT_rich Low_complexity Low_complexity 1 36 0 361 291 111 16 chr1 261581138 261581392 -20612272 + L1MC/D LINE L1 4498 4788 -1358 2148 121 0 0 chr1 261581392 261581696 -20611968 + AluSx SINE Alu 1 304 0 361 291 111 16 chr1 261581696 261581746 -20611918 + L1MC/D LINE L1 4788 4832 -1314 2289 106 3 3 chr1 261582105 261582417 -20611247 + AluSx SINE Alu 1 312 0 749 260 32 15 chr1 261582467 261582855 -20610809 + L1MC/D LINE L1 5039 5439 -743 1901 218 16 38 chr1 261582857 261582957 -20610707 + L1ME LINE L1 5267 5368 -796 1765 165 21 14 chr1 261582957 261583264 -20610400 + AluJo SINE Alu 1 309 0 1901 218 16 38 chr1 261583264 261583660 -20610004 + L1ME LINE L1 5368 5755 -409 1196 162 0 0 chr1 261583673 261583864 -20609800 + AluSg/x SINE Alu 118 308 -2 304 311 62 10 chr1 261583975 261584168 -20609496 + L1MC4a LINE L1 4457 4659 -1487 * 877 128 98 59 chr1 261584167 261584371 -20609293 + L1ME2 LINE L1 5743 5954 -210 633 231 149 41 chr1 261585242 261585437 -20608227 + L1ME2 LINE L1 5940 6155 -9 1869 244 72 20 chr1 261585447 261585992 -20607672 + L1MC4a LINE L1 5423 5995 -1813 186 167 0 0 chr1 261586247 261586283 -20607381 + A-rich Low_complexity Low_complexity 1 36 0 240 211 127 0 chr1 261586328 261586399 -20607265 - HAL1b LINE L1 -48 1300 1221 256 258 134 0 chr1 261587126 261587223 -20606441 + MLT1L LTR MaLR 412 521 -94 1437 132 0 38 chr1 261587228 261587463 -20606201 - AluJo SINE Alu 0 312 87 384 324 47 7 chr1 261587848 261587996 -20605668 + MIR SINE MIR 20 173 -89 207 284 99 0 chr1 261588005 261588086 -20605578 - L2 LINE L2 0 3313 3225 707 245 202 34 chr1 261588173 261588549 -20605115 - MER45C DNA AcHobo -326 627 316 1421 165 56 49 chr1 261588549 261588834 -20604830 + AluJb SINE Alu 1 287 -25 707 245 202 34 chr1 261588834 261588943 -20604721 - MER45C DNA AcHobo -637 316 2 404 252 67 0 chr1 261589102 261589221 -20604443 + MER5A DNA MER1_type 58 184 -5 858 176 7 46 chr1 261589222 261589375 -20604289 + AluJb SINE Alu 136 282 -30 585 132 0 88 chr1 261589377 261589491 -20604173 - FRAM SINE Alu 0 176 73 27 49 0 0 chr1 261591221 261591262 -20602402 + AT_rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr1 261591279 261591303 -20602361 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 6384 85 15 6 chr1 261591306 261592184 -20601480 - L1PA5 LINE L1 -13 6141 5256 26 0 0 0 chr1 261592282 261592308 -20601356 + AT_rich Low_complexity Low_complexity 1 26 0 1600 151 32 64 chr1 261592308 261592619 -20601045 + AluJb SINE Alu 1 301 -11 1181 183 14 0 chr1 261592693 261592901 -20600763 - L1PB4 LINE L1 -18 6138 5928 1285 92 6 6 chr1 261592917 261593090 -20600574 - AluSq SINE Alu -15 298 126 260 103 0 0 chr1 261594014 261594053 -20599611 - AluJo SINE Alu -12 290 252 1342 126 5 0 chr1 261594053 261594244 -20599420 - AluJo SINE Alu -92 220 29 583 188 148 7 chr1 261594869 261595018 -20598646 + MER5B DNA MER1_type 2 171 -7 202 86 0 29 chr1 261595628 261595663 -20598001 - L2 LINE L2 -225 3047 3014 2349 97 3 0 chr1 261595663 261595963 -20597701 - AluSx SINE Alu -11 301 1 191 290 0 32 chr1 261596149 261596211 -20597453 + L2 LINE L2 3213 3272 0 877 133 0 109 chr1 261596744 261596909 -20596755 + 7SLRNA srpRNA srpRNA 1 147 -173 4532 140 104 22 chr1 261596909 261598185 -20595479 + pTR5 LTR ERV1 743 2438 0 982 167 0 0 chr1 261598188 261598338 -20595326 + 7SLRNA srpRNA srpRNA 144 293 -27 27 0 0 0 chr1 261598344 261598371 -20595293 + AT_rich Low_complexity Low_complexity 1 27 0 182 192 110 41 chr1 261598473 261598546 -20595118 + MIR SINE MIR 185 262 0 * 206 254 223 31 chr1 261598543 261598673 -20594991 - L2 LINE L2 0 3313 3159 348 230 115 0 chr1 261598757 261598896 -20594768 + L2 LINE L2 2550 2704 -610 1381 160 57 70 chr1 261599494 261599666 -20593998 - AluJo SINE Alu -16 296 128 1745 164 0 33 chr1 261599666 261599970 -20593694 + AluJb SINE Alu 1 294 -18 1381 160 57 70 chr1 261599970 261600097 -20593567 - AluJo SINE Alu -184 128 1 569 268 45 27 chr1 261600416 261600636 -20593028 - MIR SINE MIR -2 260 37 1916 151 0 26 chr1 261601231 261601543 -20592121 + AluJb SINE Alu 1 304 -8 903 290 20 24 chr1 261601785 261602126 -20591538 - L1ME3A LINE L1 -202 5968 5629 305 345 50 0 chr1 261602223 261602342 -20591322 - L2 LINE L2 -2 3270 3146 823 140 20 20 chr1 261602346 261602496 -20591168 + MLT1A1 LTR MaLR 5 154 -211 614 150 0 20 chr1 261602497 261602597 -20591067 + AluJo SINE Alu 33 130 -182 1254 127 32 0 chr1 261602605 261602794 -20590870 + MLT1A1 LTR MaLR 171 365 0 960 171 12 6 chr1 261603343 261603507 -20590157 + AluJo SINE Alu 137 301 -1 335 218 0 77 chr1 261604560 261604638 -20589026 - L2 LINE L2 0 3272 3201 2310 98 7 7 chr1 261604960 261605265 -20588399 + AluSq SINE Alu 1 305 -8 304 246 43 80 chr1 261605962 261606100 -20587564 + L1ME3A LINE L1 5299 5431 -731 1422 149 114 16 chr1 261606106 261606361 -20587303 + AluJo SINE Alu 11 290 -22 1696 200 3 3 chr1 261606478 261606773 -20586891 + AluJo SINE Alu 3 297 -15 1581 290 100 7 chr1 261606782 261607400 -20586264 + L1ME3A LINE L1 5484 6159 -11 1598 148 100 11 chr1 261607427 261607698 -20585966 + AluJb SINE Alu 1 295 -17 1105 117 0 13 chr1 261607701 261607882 -20585782 + AluSg/x SINE Alu 137 312 0 475 301 40 0 chr1 261607976 261608152 -20585512 + L1ME LINE L1 5533 5715 -406 2483 91 0 0 chr1 261608157 261608465 -20585199 - AluSx SINE Alu -4 308 1 1336 225 34 6 chr1 261608691 261609011 -20584653 - LTR53 LTR ERVL -2 517 189 264 206 52 31 chr1 261610548 261610645 -20583019 + MLT1J1 LTR MaLR 1 99 -347 2205 113 0 7 chr1 261610780 261611073 -20582591 - AluSg SINE Alu -9 301 11 1144 197 123 4 chr1 261611124 261611393 -20582271 + L1M4 LINE L1 4677 4977 -1169 300 155 52 0 chr1 261611415 261611473 -20582191 - FLAM SINE Alu 0 133 73 620 145 137 8 chr1 261612528 261612645 -20581019 - L2 LINE L2 -2 3311 3180 454 263 267 4 chr1 261612627 261612889 -20580775 - L2 LINE L2 -702 2612 2282 * 256 155 141 56 chr1 261612913 261612984 -20580680 - Charlie4 DNA MER1_type 0 1961 1885 2294 105 7 0 chr1 261613339 261613634 -20580030 - AluSx SINE Alu -15 297 1 1918 140 39 0 chr1 261614019 261614304 -20579360 - AluJb SINE Alu -16 296 1 812 126 0 17 chr1 261614608 261614727 -20578937 + FLAM_C SINE Alu 1 117 -26 279 0 0 0 chr1 261614733 261614764 -20578900 + (CA)n Simple_repeat Simple_repeat 2 32 0 859 198 21 0 chr1 261614774 261614966 -20578698 - Charlie4 DNA MER1_type -1673 288 93 1456 154 57 14 chr1 261615139 261615419 -20578245 + AluJo SINE Alu 1 292 -20 38 22 0 0 chr1 261615590 261615635 -20578029 + GC_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr1 261615970 261616003 -20577661 + GC_rich Low_complexity Low_complexity 1 33 0 206 346 25 0 chr1 261617304 261617385 -20576279 - L2 LINE L2 -470 2844 2762 1207 223 69 44 chr1 261617423 261617808 -20575856 + Charlie4a DNA MER1_type 1 400 -1561 888 145 0 0 chr1 261617808 261617939 -20575725 - FLAM_C SINE Alu -2 131 1 1207 223 69 44 chr1 261617939 261617989 -20575675 + Charlie4a DNA MER1_type 400 447 -61 1771 134 3 49 chr1 261618167 261618473 -20575191 + AluJb SINE Alu 1 292 -20 2006 108 47 4 chr1 261620297 261620574 -20573090 + AluSg SINE Alu 1 289 -21 1276 156 129 4 chr1 261621798 261622061 -20571603 - L1MC1 LINE L1 -1 6332 6037 440 111 0 0 chr1 261622061 261622124 -20571540 + MER66B-int LTR ERV1 6614 6676 0 2378 173 24 7 chr1 261622131 261622583 -20571081 + MER66B LTR ERV1 27 486 0 380 126 218 0 chr1 261622583 261622670 -20570994 - L1MC1 LINE L1 -291 6042 5937 312 267 0 111 chr1 261623300 261623435 -20570229 - L1 LINE L1 -1109 5037 4918 1090 126 50 6 chr1 261623448 261623630 -20570034 - AluY SINE Alu -2 309 120 714 152 0 0 chr1 261623755 261623867 -20569797 - AluY SINE Alu -13 298 187 828 129 39 62 chr1 261623871 261624049 -20569615 - L1MC1 LINE L1 -8 6325 6152 4551 156 19 21 chr1 261624050 261624404 -20569260 - L1MC1 LINE L1 -132 6201 5848 2285 95 10 0 chr1 261624404 261624699 -20568965 + AluSg SINE Alu 1 298 -12 4551 156 19 21 chr1 261624699 261625210 -20568454 - L1MC1 LINE L1 -485 5848 5338 1335 140 70 9 chr1 261625228 261625442 -20568222 - AluJb SINE Alu -15 297 71 2094 213 73 32 chr1 261625443 261626045 -20567619 - L1MC1 LINE L1 -816 5330 4704 1281 155 103 0 chr1 261626045 261626297 -20567367 - MSTA LTR MaLR -150 278 1 1013 182 50 146 chr1 261626465 261626767 -20566897 - AluJo SINE Alu -39 273 1 841 140 240 0 chr1 261626890 261627040 -20566624 - AluSg/x SINE Alu -44 265 80 2983 166 34 113 chr1 261627354 261627403 -20566261 - L1MB3 LINE L1 0 6183 6132 2331 93 0 29 chr1 261627403 261627713 -20565951 - AluSx SINE Alu -11 301 1 2983 166 34 113 chr1 261627713 261628115 -20565549 - L1MB3 LINE L1 -51 6132 5829 1552 124 9 9 chr1 261628115 261628332 -20565332 - AluSg/x SINE Alu -11 301 85 2983 166 34 113 chr1 261628332 261628736 -20564928 - L1MB3 LINE L1 -354 5829 5395 545 254 181 0 chr1 261628808 261628985 -20564679 - MIR SINE MIR -12 250 42 896 182 38 13 chr1 261628985 261629144 -20564520 - AluJb SINE Alu -13 299 137 502 181 74 27 chr1 261629237 261629386 -20564278 - L1ME LINE L1 -459 5662 5507 1561 158 16 65 chr1 261629406 261629716 -20563948 - AluJo SINE Alu -17 295 1 319 329 29 41 chr1 261629743 261629913 -20563751 - L1MB3 LINE L1 -885 5261 5094 1448 228 61 12 chr1 261629925 261630354 -20563310 - L1ME2 LINE L1 -17 6147 5698 * 1553 248 74 17 chr1 261630333 261630874 -20562790 - L1MC1 LINE L1 -1523 4623 4052 270 230 100 10 chr1 261630880 261630980 -20562684 - L1P LINE L1 -1155 4991 4883 1170 164 187 0 chr1 261632555 261632774 -20560890 + AluJo SINE Alu 40 299 -13 446 340 0 0 chr1 261634201 261634342 -20559322 - MIR SINE MIR -1 261 121 360 209 29 67 chr1 261636288 261636393 -20557271 - MIR SINE MIR -70 192 92 210 281 70 62 chr1 261636415 261636490 -20557174 + MIR SINE MIR 124 202 -60 2272 118 0 7 chr1 261636490 261636787 -20556877 + AluSx SINE Alu 1 295 -17 210 281 70 62 chr1 261636787 261636839 -20556825 + MIR SINE MIR 202 252 -10 360 267 23 12 chr1 261638523 261638609 -20555055 - L2 LINE L2 -18 3295 3209 1586 188 35 3 chr1 261640954 261641242 -20552422 + AluJo SINE Alu 1 297 -15 1056 194 102 14 chr1 261642932 261643148 -20550516 + MER46A DNA MER2_type 2 236 0 362 232 127 21 chr1 261643205 261643347 -20550317 + MER103 DNA DNA 1 157 -9 1809 153 53 0 chr1 261644924 261645206 -20548458 - AluJb SINE Alu -15 297 1 1247 205 82 51 chr1 261646726 261647140 -20546524 + L1M4 LINE L1 3514 3940 -2206 976 192 39 24 chr1 261647969 261648224 -20545440 - Charlie5 DNA MER1_type -27 2585 2327 399 308 123 50 chr1 261648259 261648519 -20545145 - L1ME4a LINE L1 -290 5831 5553 217 312 78 13 chr1 261648682 261648759 -20544905 - L2 LINE L2 -40 3232 3151 767 164 0 30 chr1 261649799 261649933 -20543731 - AluJb SINE Alu -181 131 2 2063 121 3 20 chr1 261651050 261651071 -20542593 - AluSx SINE Alu -11 301 281 225 0 0 0 chr1 261651071 261651096 -20542568 + (GTTTG)n Simple_repeat Simple_repeat 1 25 0 2063 121 3 20 chr1 261651096 261651380 -20542284 - AluSx SINE Alu -31 281 1 316 267 146 24 chr1 261651953 261652159 -20541505 + MARNA DNA Mariner 43 273 -313 231 309 53 32 chr1 261652386 261652480 -20541184 - L2 LINE L2 -35 3237 3142 680 197 16 93 chr1 261653620 261653776 -20539888 + MER8 DNA MER2_type 2 142 -97 2180 122 3 28 chr1 261653776 261654096 -20539568 - AluSx SINE Alu 0 312 1 680 197 16 93 chr1 261654096 261654132 -20539532 + MER8 DNA MER2_type 142 179 -60 252 308 0 0 chr1 261654106 261654171 -20539493 + MER2 DNA MER2_type 281 345 0 * 370 157 43 0 chr1 261654171 261654239 -20539425 - Tigger2 DNA MER2_type -2647 71 1 329 260 58 0 chr1 261655061 261655165 -20538499 - L1MC4 LINE L1 -1 8041 7932 369 196 421 0 chr1 261656338 261656471 -20537193 - MER5A DNA MER1_type 0 189 1 207 0 0 0 chr1 261656578 261656601 -20537063 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 261 315 102 0 chr1 261657452 261657560 -20536104 - MIR3 SINE MIR -2 206 88 2115 125 0 0 chr1 261657972 261658261 -20535403 - AluSx SINE Alu 0 312 24 389 337 171 0 chr1 261659341 261659534 -20534130 - MIR SINE MIR 0 262 37 28 29 0 0 chr1 261660883 261660918 -20532746 + AT_rich Low_complexity Low_complexity 1 35 0 1926 95 15 8 chr1 261661325 261661588 -20532076 + AluSx SINE Alu 43 307 -5 609 123 0 0 chr1 261663474 261663555 -20530109 + AluJ/FLAM SINE Alu 9 89 -223 1850 127 55 4 chr1 261663878 261664153 -20529511 + AluSc SINE Alu 1 289 -20 772 60 10 0 chr1 261664216 261664316 -20529348 + AluY SINE Alu 198 298 -13 505 272 58 29 chr1 261665415 261665588 -20528076 + ERVL LTR ERVL 4466 4643 -1121 1273 273 61 36 chr1 261665783 261666260 -20527404 + ERVL LTR ERVL 4888 5376 -388 2057 103 0 78 chr1 261666306 261666637 -20527027 - AluSx SINE Alu -7 305 1 319 327 9 0 chr1 261667000 261667107 -20526557 + MIR SINE MIR 155 262 0 1349 183 20 43 chr1 261668344 261668644 -20525020 + AluJo SINE Alu 1 293 -19 1958 134 0 21 chr1 261668644 261668934 -20524730 + AluSx SINE Alu 1 284 -28 29 0 0 0 chr1 261668934 261668963 -20524701 + AT_rich Low_complexity Low_complexity 1 29 0 254 309 147 34 chr1 261668971 261669175 -20524489 - MLT1L LTR MaLR -192 423 197 182 220 20 40 chr1 261669387 261669437 -20524227 + MIR3 SINE MIR 157 205 -3 1874 148 10 14 chr1 261670976 261671273 -20522391 - AluJb SINE Alu -16 296 1 452 159 149 0 chr1 261671300 261671407 -20522257 - MIR SINE MIR -59 203 81 490 149 170 0 chr1 261672047 261672141 -20521523 - FLAM_C SINE Alu -32 111 2 2363 100 3 0 chr1 261672146 261672446 -20521218 - AluSx SINE Alu -11 301 1 518 81 0 27 chr1 261672566 261672640 -20521024 + AluSq/x SINE Alu 72 143 -169 180 0 0 0 chr1 261672686 261672706 -20520958 + (TA)n Simple_repeat Simple_repeat 2 21 0 1408 168 40 67 chr1 261673790 261673936 -20519728 + AluJo SINE Alu 2 137 -175 2221 110 0 3 chr1 261673936 261674236 -20519428 + AluSx SINE Alu 1 299 -13 1408 168 40 67 chr1 261674236 261674387 -20519277 + AluJo SINE Alu 137 291 -21 251 164 49 16 chr1 261675727 261675788 -20517876 + MLT1F1 LTR MaLR 3 65 -502 236 262 16 0 chr1 261675827 261675888 -20517776 + MLT1F LTR MaLR 54 115 -452 306 0 0 0 chr1 261675915 261675949 -20517715 + (TA)n Simple_repeat Simple_repeat 2 35 0 730 182 0 28 chr1 261675965 261676108 -20517556 - FLAM_C SINE Alu 0 143 5 2233 83 45 3 chr1 261676116 261676405 -20517259 - AluSx SINE Alu -11 301 1 378 185 27 10 chr1 261676406 261676541 -20517123 + MLT1F LTR MaLR 183 364 -178 982 171 22 11 chr1 261676551 261676732 -20516932 - MER20 DNA MER1_type -21 198 16 721 159 178 6 chr1 261676756 261676913 -20516751 + MLT1F LTR MaLR 359 542 0 2298 116 3 3 chr1 261676965 261677275 -20516389 - AluSx SINE Alu -1 311 2 253 329 158 13 chr1 261677298 261677450 -20516214 - L3 LINE CR1 -15 1562 1389 2237 96 36 0 chr1 261677492 261677793 -20515871 - AluSq SINE Alu -1 312 1 2105 140 0 3 chr1 261677929 261678236 -20515428 - AluSx SINE Alu -1 311 6 2389 113 11 6 chr1 261678480 261678833 -20514831 - THE1A LTR MaLR 0 355 1 36 23 0 0 chr1 261679307 261679350 -20514314 + AT_rich Low_complexity Low_complexity 1 43 0 2152 112 14 7 chr1 261679356 261679650 -20514014 + AluSx SINE Alu 1 296 -16 1444 185 34 48 chr1 261679701 261679820 -20513844 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr1 261679820 261679841 -20513823 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1444 185 34 48 chr1 261679841 261680013 -20513651 + AluJb SINE Alu 120 288 -24 486 299 75 7 chr1 261680263 261680410 -20513254 + MER91A DNA MER1_type 4 160 -36 550 169 6 139 chr1 261680650 261680741 -20512923 + MER5B DNA MER1_type 8 109 -69 1983 139 60 26 chr1 261680741 261681093 -20512571 - THE1B LTR MaLR 0 364 1 11892 85 8 22 chr1 261681093 261681172 -20512492 - THE1B-int LTR MaLR 0 1580 1501 2313 99 0 3 chr1 261681172 261681466 -20512198 - AluY SINE Alu -18 293 1 11892 85 8 22 chr1 261681466 261681712 -20511952 - THE1B-int LTR MaLR -79 1501 1253 2304 102 3 0 chr1 261681712 261682007 -20511657 - AluSg SINE Alu -13 297 2 11892 85 8 22 chr1 261682007 261683282 -20510382 - THE1B-int LTR MaLR -327 1253 1 2330 110 48 22 chr1 261683282 261683637 -20510027 - THE1B LTR MaLR 0 364 1 550 169 6 139 chr1 261683637 261683709 -20509955 + MER5B DNA MER1_type 106 151 -27 278 203 16 16 chr1 261683745 261683809 -20509855 + MLT1L LTR MaLR 146 209 -406 1376 177 0 48 chr1 261683809 261684057 -20509607 + AluJb SINE Alu 1 236 -76 500 132 13 0 chr1 261684389 261684465 -20509199 + AluJo SINE Alu 59 135 -177 1859 143 43 7 chr1 261684465 261684765 -20508899 + AluJb SINE Alu 1 311 -1 2056 117 46 0 chr1 261684769 261685052 -20508612 + AluSx SINE Alu 1 296 -16 2426 81 3 0 chr1 261685053 261685350 -20508314 + AluSg SINE Alu 1 298 -12 473 288 113 11 chr1 261686355 261686532 -20507132 + MIR SINE MIR 67 261 -1 1051 190 9 19 chr1 261686539 261686750 -20506914 - MLT1A1 LTR MaLR -1 364 156 1549 187 44 0 chr1 261686766 261687098 -20506566 - AluJb SINE Alu 0 344 1 750 330 40 38 chr1 261687446 261688049 -20505615 + L1MEc LINE L1 35 638 -5758 807 201 29 35 chr1 261688050 261688168 -20505496 + MER20 DNA MER1_type 1 119 -100 1582 166 172 10 chr1 261688168 261688482 -20505182 - MLT1A1 LTR MaLR 0 365 1 807 201 29 35 chr1 261688482 261688537 -20505127 + MER20 DNA MER1_type 119 173 -46 2383 101 0 19 chr1 261688646 261688963 -20504701 + AluSx SINE Alu 1 311 -1 245 206 48 0 chr1 261688963 261689026 -20504638 + L1MEc LINE L1 1647 1712 -4684 308 93 0 0 chr1 261689031 261689074 -20504590 + AluJo SINE Alu 1 43 -259 979 120 23 0 chr1 261689101 261689234 -20504430 - AluSq/x SINE Alu -176 136 1 1365 182 4 12 chr1 261689235 261689477 -20504187 + AluJo SINE Alu 28 267 -45 566 246 54 25 chr1 261689477 261689515 -20504149 + L1MEc LINE L1 1751 1786 -4610 2596 65 0 0 chr1 261689515 261689821 -20503843 + AluY SINE Alu 1 306 -5 566 246 54 25 chr1 261689821 261690058 -20503606 + L1MEc LINE L1 1786 2034 -4362 432 206 93 19 chr1 261690596 261690703 -20502961 - AluJb SINE Alu 0 312 198 219 36 0 0 chr1 261690706 261690734 -20502930 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1866 170 3 20 chr1 261690881 261691187 -20502477 + AluJb SINE Alu 2 302 -10 992 157 29 0 chr1 261691768 261691940 -20501724 - AluSg/x SINE Alu -2 308 132 2138 133 3 0 chr1 261691940 261692234 -20501430 - AluSx SINE Alu -16 296 2 2054 108 21 7 chr1 261692293 261692579 -20501085 + AluSc SINE Alu 1 290 -19 2359 98 3 0 chr1 261692651 261692958 -20500706 + AluSp SINE Alu 1 308 -5 1406 116 4 36 chr1 261692966 261693191 -20500473 + AluSg/x SINE Alu 85 302 -8 377 185 51 115 chr1 261693192 261693296 -20500368 + L1MEc LINE L1 2750 2842 -3373 1946 155 7 7 chr1 261693296 261693606 -20500058 - AluSx SINE Alu -2 310 1 377 185 51 115 chr1 261693606 261693658 -20500006 + L1MEc LINE L1 2842 2896 -3319 * 2212 203 37 98 chr1 261693652 261693991 -20499673 + L1ME2 LINE L1 5442 5800 -534 2232 111 0 0 chr1 261693991 261694280 -20499384 + AluSq SINE Alu 1 289 -24 2212 203 37 98 chr1 261694280 261694444 -20499220 + L1ME2 LINE L1 5800 5973 -361 213 39 0 0 chr1 261694444 261694470 -20499194 + (TG)n Simple_repeat Simple_repeat 2 27 0 2212 203 37 98 chr1 261694470 261694748 -20498916 + L1ME2 LINE L1 5973 6334 0 2424 57 17 0 chr1 261694810 261695107 -20498557 - AluY SINE Alu -9 302 1 2297 122 0 0 chr1 261695267 261695579 -20498085 - AluSx SINE Alu 0 312 1 4980 118 39 23 chr1 261695628 261696230 -20497434 + LTR39 LTR ERV1 1 619 -164 1771 155 3 78 chr1 261696230 261696552 -20497112 + AluJo SINE Alu 1 298 -14 4980 118 39 23 chr1 261696552 261696720 -20496944 + LTR39 LTR ERV1 619 783 0 233 269 21 32 chr1 261697102 261697195 -20496469 - LTR16B LTR ERVL -7 457 366 225 0 0 0 chr1 261697302 261697327 -20496337 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2023 124 4 0 chr1 261697331 261697606 -20496058 - AluSx SINE Alu -36 276 1 443 299 71 7 chr1 261698059 261698213 -20495451 - LTR16B LTR ERVL -237 227 64 2699 171 18 22 chr1 261698231 261698759 -20494905 + MLT2B3 LTR ERVL 1 413 -40 267 104 0 0 chr1 261698759 261698807 -20494857 + (TATG)n Simple_repeat Simple_repeat 2 49 0 262 190 0 0 chr1 261698810 261698868 -20494796 + MLT2B3 LTR ERVL 458 515 -5 327 309 64 49 chr1 261698940 261699144 -20494520 + L2 LINE L2 2818 3024 -248 1139 234 56 56 chr1 261699189 261699531 -20494133 + MER39 LTR ERV1 7 348 -359 2027 138 20 0 chr1 261699531 261699827 -20493837 - AluSx SINE Alu -10 302 1 1139 234 56 56 chr1 261699827 261699972 -20493692 + MER39 LTR ERV1 348 707 0 261 278 153 62 chr1 261700037 261700181 -20493483 + L2 LINE L2 3116 3272 0 1361 167 53 0 chr1 261700255 261700483 -20493181 - AluJb SINE Alu 0 312 73 1431 152 47 16 chr1 261700685 261700942 -20492722 + AluJb SINE Alu 21 285 -27 280 0 0 0 chr1 261700942 261700973 -20492691 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 371 127 28 0 chr1 261701108 261701179 -20492485 - L1MB8 LINE L1 -12 6166 6094 1637 130 25 76 chr1 261701181 261701360 -20492304 - MER44D DNA MER2_type -1885 606 419 1666 181 24 3 chr1 261701360 261701652 -20492012 + AluJb SINE Alu 1 298 -14 1637 130 25 76 chr1 261701652 261701826 -20491838 - MER44D DNA MER2_type -2072 419 1 652 158 12 85 chr1 261701826 261701867 -20491797 - L1MB7 LINE L1 -16 6168 6126 1766 157 14 0 chr1 261701867 261702153 -20491511 - AluSx SINE Alu -22 290 1 652 158 12 85 chr1 261702153 261702195 -20491469 - L1MB7 LINE L1 -58 6126 6023 284 154 0 19 chr1 261702216 261702268 -20491396 + AluJo SINE Alu 31 81 -221 2784 165 89 43 chr1 261702275 261702815 -20490849 - LTR12 LTR ERV1 -148 566 2 1221 180 25 17 chr1 261702816 261703055 -20490609 + AluJo SINE Alu 71 311 -1 1569 131 4 51 chr1 261703055 261703330 -20490334 - L1MB8 LINE L1 -144 6034 5773 1242 90 64 0 chr1 261703333 261703521 -20490143 - L1PA13 LINE L1 -3 6160 5961 1962 135 13 22 chr1 261703567 261703879 -20489785 + AluSq SINE Alu 1 309 -4 324 262 37 45 chr1 261703970 261704081 -20489583 - L1ME4a LINE L1 -50 6049 1193 1998 133 8 44 chr1 261704120 261704480 -20489184 - L1MB3 LINE L1 -1 6182 5836 241 119 0 0 chr1 261704480 261704522 -20489142 - HSMAR2 DNA Mariner -2 1300 1259 2041 153 0 0 chr1 261704532 261704827 -20488837 + AluSx SINE Alu 1 295 -17 1129 173 0 0 chr1 261704827 261705000 -20488664 + AluJb SINE Alu 134 306 -6 2752 29 3 0 chr1 261705824 261706133 -20487531 + AluY SINE Alu 1 310 -1 4624 127 11 30 chr1 261706593 261706873 -20486791 - HSMAR2 DNA Mariner -37 1265 981 2002 137 3 0 chr1 261706873 261707184 -20486480 - AluJb SINE Alu 0 312 1 4624 127 11 30 chr1 261707184 261707632 -20486032 - HSMAR2 DNA Mariner -321 981 550 600 183 0 0 chr1 261707599 261707703 -20485961 + U13 snRNA snRNA 1 104 0 * 3842 114 0 64 chr1 261707728 261708057 -20485607 - HSMAR2 DNA Mariner -712 590 242 3063 98 19 7 chr1 261708057 261708484 -20485180 - MER57B LTR ERV1 0 434 3 3842 114 0 64 chr1 261708484 261708735 -20484929 - HSMAR2 DNA Mariner -1060 242 50 2280 121 0 0 chr1 261708735 261709041 -20484623 - AluSx SINE Alu -6 306 1 3842 114 0 64 chr1 261709041 261709088 -20484576 - HSMAR2 DNA Mariner -1252 50 2 2921 167 32 31 chr1 261709090 261709961 -20483703 - L1MB3 LINE L1 -345 5838 4971 324 315 25 10 chr1 261710113 261710248 -20483416 - MIR SINE MIR -64 144 30 21 0 0 0 chr1 261710623 261710644 -20483020 + AT_rich Low_complexity Low_complexity 1 21 0 2270 108 3 25 chr1 261710792 261711106 -20482558 - AluSx SINE Alu -5 307 1 346 48 0 48 chr1 261711260 261711322 -20482342 - L1MA3 LINE L1 0 6305 6247 1429 158 19 133 chr1 261711475 261711820 -20481844 + MLT1A1 LTR MaLR 1 293 -72 2337 106 0 0 chr1 261711820 261712122 -20481542 + AluSq SINE Alu 1 302 -11 1429 158 19 133 chr1 261712122 261712188 -20481476 + MLT1A1 LTR MaLR 293 365 0 181 296 19 0 chr1 261712236 261712290 -20481374 + MIR SINE MIR 49 103 -159 433 247 116 53 chr1 261713086 261713276 -20480388 - MIR SINE MIR -33 229 28 856 181 64 44 chr1 261715830 261716034 -20477630 + MER3 DNA MER1_type 1 208 -1 2298 94 7 10 chr1 261716091 261716400 -20477264 - AluSp SINE Alu -5 308 1 360 282 114 0 chr1 261717055 261717186 -20476478 - MIR SINE MIR 0 262 117 639 304 134 38 chr1 261717186 261717403 -20476261 + L2 LINE L2 2243 2438 -834 2328 90 3 0 chr1 261717403 261717704 -20475960 - AluSx SINE Alu -6 306 5 639 304 134 38 chr1 261717704 261718234 -20475430 + L2 LINE L2 2438 3081 -191 1620 156 0 78 chr1 261718242 261718562 -20475102 - AluJo SINE Alu -17 295 1 1678 139 109 0 chr1 261718566 261718833 -20474831 - AluSx SINE Alu -16 296 1 463 261 155 35 chr1 261719039 261719380 -20474284 + L2 LINE L2 2920 3301 -12 455 210 20 0 chr1 261719388 261719488 -20474176 - U13 snRNA snRNA -2 102 1 654 224 171 26 chr1 261719595 261719823 -20473841 - MIR SINE MIR 0 262 2 2289 112 3 10 chr1 261719844 261720158 -20473506 + AluSx SINE Alu 1 312 0 762 278 78 38 chr1 261720228 261720548 -20473116 + L2 LINE L2 2978 3310 -3 2350 91 0 13 chr1 261721182 261721489 -20472175 - AluY SINE Alu -8 303 1 1389 232 3 7 chr1 261721668 261721965 -20471699 - AluJb SINE Alu -16 296 1 25 51 0 0 chr1 261722758 261722797 -20470867 + AT_rich Low_complexity Low_complexity 1 39 0 2172 122 7 0 chr1 261722880 261723176 -20470488 - AluSx SINE Alu -13 299 2 2020 158 0 0 chr1 261723179 261723482 -20470182 - AluJo SINE Alu -9 303 1 2059 122 3 39 chr1 261723515 261723827 -20469837 + AluSx SINE Alu 3 303 -9 2186 114 3 7 chr1 261724228 261724527 -20469137 - AluSx SINE Alu -13 299 2 1597 145 3 106 chr1 261724840 261725171 -20468493 - AluJb SINE Alu -15 297 1 2113 132 3 3 chr1 261725247 261725551 -20468113 + AluSx SINE Alu 6 309 -3 1644 105 126 25 chr1 261726734 261727011 -20466653 - AluJo SINE Alu -7 305 1 219 88 0 0 chr1 261728264 261728298 -20465366 + (TA)n Simple_repeat Simple_repeat 2 35 0 2248 92 3 0 chr1 261728298 261728582 -20465082 - AluSx SINE Alu -27 285 1 914 153 0 0 chr1 261728649 261728780 -20464884 + AluSq/x SINE Alu 1 131 -182 641 131 0 0 chr1 261729760 261729859 -20463805 - AluSg SINE Alu -9 303 205 1190 83 0 0 chr1 261729860 261730005 -20463659 - AluSg SINE Alu -165 145 1 390 239 15 54 chr1 261730255 261730385 -20463279 - MIR SINE MIR -106 156 32 693 284 50 0 chr1 261730398 261730616 -20463048 + MIR SINE MIR 18 246 -16 2352 90 0 3 chr1 261730794 261731093 -20462571 - AluSx SINE Alu -14 298 1 1191 158 64 17 chr1 261731229 261731463 -20462201 + MER96B DNA MER1_type? 173 417 0 1412 187 16 0 chr1 261731463 261731709 -20461955 - MLT1F LTR MaLR -292 250 1 394 134 60 8 chr1 261731773 261731853 -20461811 + L1MA9 LINE L1 5994 6070 -230 684 99 0 0 chr1 261731855 261731956 -20461708 + L1MA8 LINE L1 6179 6279 -12 2258 112 0 0 chr1 261731956 261732251 -20461413 - AluSg SINE Alu -15 295 1 1924 112 47 14 chr1 261732622 261732898 -20460766 + AluSx SINE Alu 1 285 -27 22 56 0 0 chr1 261732898 261732934 -20460730 + AT_rich Low_complexity Low_complexity 1 36 0 2133 128 3 7 chr1 261733045 261733349 -20460315 + AluSx SINE Alu 1 303 -9 272 248 19 136 chr1 261733696 261733910 -20459754 + MIR SINE MIR 66 254 -8 1101 70 0 0 chr1 261733934 261734077 -20459587 + L1MA5 LINE L1 6152 6294 -6 299 151 75 0 chr1 261734094 261734147 -20459517 + L1ME LINE L1 5722 5778 -388 5844 46 4 1 chr1 261734395 261735071 -20458593 + SVA Other Other 706 1383 -3 180 0 0 0 chr1 261735450 261735470 -20458194 + (TAA)n Simple_repeat Simple_repeat 2 21 0 757 255 127 55 chr1 261735471 261735887 -20457777 + MLT1H LTR MaLR 104 549 0 719 246 86 12 chr1 261736028 261736272 -20457392 + MIR SINE MIR 1 262 0 243 113 48 0 chr1 261736356 261736418 -20457246 + (TA)n Simple_repeat Simple_repeat 1 65 0 908 141 16 0 chr1 261736459 261736587 -20457077 + AluSq/x SINE Alu 1 130 -183 2002 142 23 13 chr1 261737247 261737550 -20456114 - AluSx SINE Alu -6 306 1 2429 115 120 5 chr1 261737819 261738203 -20455461 + MSTA LTR MaLR 1 428 0 279 233 156 0 chr1 261738370 261738460 -20455204 + MER46C DNA MER2_type 1 104 -234 484 123 0 0 chr1 261738460 261738541 -20455123 + L1M4 LINE L1 4963 5043 -1103 801 259 28 5 chr1 261738556 261738768 -20454896 + MER20 DNA MER1_type 2 218 -1 440 133 48 12 chr1 261739828 261739911 -20453753 - L1MC1 LINE L1 -3 6330 6245 1845 206 45 35 chr1 261739942 261740404 -20453260 - MLT1C LTR MaLR 0 467 1 431 182 13 0 chr1 261741601 261741678 -20451986 + L1M3 LINE L1 5627 5704 -479 561 192 0 42 chr1 261741678 261741798 -20451866 - LTR38 LTR ERV1 0 556 442 9532 114 49 38 chr1 261741949 261742366 -20451298 + LTR38-int LTR ERV1 391 802 -3269 6306 151 56 34 chr1 261742366 261743086 -20450578 + LTR57-int LTR ERVL 318 1080 -4263 1742 179 10 3 chr1 261743086 261743376 -20450288 + AluJo SINE Alu 1 292 -20 6306 151 56 34 chr1 261743376 261743936 -20449728 + LTR57-int LTR ERVL 1080 1626 -3717 9532 114 49 38 chr1 261743936 261744369 -20449295 + LTR38-int LTR ERV1 802 1229 -2842 2503 80 0 0 chr1 261744369 261744668 -20448996 - AluY SINE Alu -12 299 1 9532 114 49 38 chr1 261744668 261744723 -20448941 + LTR38-int LTR ERV1 1229 4071 0 8426 109 21 18 chr1 261744729 261745983 -20447681 + L1P3 LINE L1 4 1260 -5201 180 0 0 0 chr1 261745984 261746004 -20447660 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 5501 65 16 15 chr1 261746004 261746744 -20446920 + SVA Other Other 1 741 -645 22 70 0 0 chr1 261747251 261747294 -20446370 + AT_rich Low_complexity Low_complexity 1 43 0 1979 119 0 41 chr1 261747497 261747820 -20445844 - AluSp SINE Alu 0 311 1 543 282 10 20 chr1 261748577 261748772 -20444892 - MIR SINE MIR -3 259 67 2385 97 0 3 chr1 261748802 261749112 -20444552 + AluSq SINE Alu 1 309 -4 3461 261 104 57 chr1 261749270 261750843 -20442821 - L2 LINE L2 -42 3271 1620 1980 89 31 57 chr1 261752317 261752488 -20441176 - L1MA3 LINE L1 0 6305 6146 1669 164 20 10 chr1 261752488 261752780 -20440884 - AluJo SINE Alu -11 301 7 1980 89 31 57 chr1 261752780 261752957 -20440707 - L1MA3 LINE L1 -159 6146 5966 1633 142 4 0 chr1 261753043 261753289 -20440375 + AluJb SINE Alu 66 312 0 23 54 0 0 chr1 261753361 261753398 -20440266 + AT_rich Low_complexity Low_complexity 1 37 0 1359 148 30 22 chr1 261755102 261755332 -20438332 + AluJb SINE Alu 67 298 -14 186 133 0 0 chr1 261755342 261755372 -20438292 + (A)n Simple_repeat Simple_repeat 1 30 0 836 361 82 20 chr1 261755734 261756271 -20437393 + L3 LINE CR1 263 832 -745 497 240 170 35 chr1 261756424 261756595 -20437069 + MIR SINE MIR 10 203 -59 231 264 176 11 chr1 261757250 261757341 -20436323 + L3 LINE CR1 1215 1320 -257 822 261 37 9 chr1 261757680 261757898 -20435766 + MER92B LTR ERV1 365 588 -48 367 289 81 34 chr1 261758491 261758570 -20435094 + L3 LINE CR1 1411 1485 -92 1547 216 27 19 chr1 261758570 261758940 -20434724 + MLT1A2 LTR MaLR 2 374 0 367 289 81 34 chr1 261758940 261759009 -20434655 + L3 LINE CR1 1485 1566 -11 1410 180 83 18 chr1 261759296 261759574 -20434090 + AluJo SINE Alu 1 296 -16 22 0 0 0 chr1 261760319 261760341 -20433323 + AT_rich Low_complexity Low_complexity 1 22 0 6880 126 50 19 chr1 261762984 261764176 -20429488 + Tigger3b DNA MER2_type 2 1230 -1 1576 32 11 5 chr1 261765319 261765509 -20428155 + SVA Other Other 1196 1386 0 198 0 0 0 chr1 261765549 261765571 -20428093 + (A)n Simple_repeat Simple_repeat 1 22 0 28026 106 9 11 chr1 261765588 261766075 -20427589 + L1PA8 LINE L1 952 1438 -4734 186 43 0 0 chr1 261766075 261766098 -20427566 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2293 99 0 0 chr1 261766108 261766453 -20427211 + AluSp SINE Alu 1 345 0 28026 106 9 11 chr1 261766453 261770351 -20423313 + L1PA8 LINE L1 1447 5350 -822 2200 92 0 30 chr1 261770351 261770655 -20423009 + AluY SINE Alu 3 297 -14 28026 106 9 11 chr1 261770655 261771128 -20422536 + L1PA8 LINE L1 5350 5822 -350 2273 114 3 0 chr1 261771128 261771435 -20422229 + AluSp SINE Alu 1 308 -5 28026 106 9 11 chr1 261771435 261771784 -20421880 + L1PA8 LINE L1 5822 6170 -2 987 161 85 59 chr1 261771801 261772158 -20421506 + MER4B-int LTR ERV1 2348 3730 -2868 1099 178 38 24 chr1 261772195 261772482 -20421182 + MER4B-int LTR ERV1 3731 4021 -2577 416 176 72 52 chr1 261772465 261772618 -20421046 + MER4B-int LTR ERV1 4578 4733 -1865 * 605 212 35 53 chr1 261772746 261772916 -20420748 + MER4B-int LTR ERV1 3787 3953 -4167 371 189 157 0 chr1 261773119 261773249 -20420415 + MER4B-int LTR ERV1 4168 6143 -615 * 1523 188 103 3 chr1 261773242 261773582 -20420082 + MER4B-int LTR ERV1 6376 6749 -9 731 151 79 7 chr1 261773588 261773727 -20419937 + LTR38 LTR ERV1 408 556 0 2634 148 50 0 chr1 261773727 261774187 -20419477 + L1MB3 LINE L1 5701 6183 0 2324 81 13 0 chr1 261774202 261774509 -20419155 + AluSx SINE Alu 1 311 -1 237 350 25 48 chr1 261775927 261776083 -20417581 - MIR3 SINE MIR -78 130 3 1650 177 0 10 chr1 261776470 261776645 -20417019 - AluJb SINE Alu -16 296 124 270 0 0 0 chr1 261776645 261776675 -20416989 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1650 177 0 10 chr1 261776675 261776798 -20416866 - AluJb SINE Alu -188 124 1 245 236 0 18 chr1 261777118 261777173 -20416491 + L2 LINE L2 3214 3267 -5 633 275 157 17 chr1 261777444 261777731 -20415933 + L3 LINE CR1 1232 1558 -19 23 54 0 0 chr1 261778174 261778211 -20415453 + AT_rich Low_complexity Low_complexity 1 37 0 4660 48 8 2 chr1 261778281 261778867 -20414797 - L1PA6 LINE L1 0 6154 5565 825 217 105 18 chr1 261779430 261779706 -20413958 + HAL1 LINE L1 2205 2504 -3 1627 150 8 19 chr1 261779773 261780040 -20413624 + AluJb SINE Alu 36 299 -13 198 282 173 27 chr1 261780049 261780159 -20413505 - L2 LINE L2 -9 3304 3179 372 304 120 31 chr1 261780534 261780725 -20412939 + MIR SINE MIR 42 249 -13 25 0 0 0 chr1 261781057 261781082 -20412582 + AT_rich Low_complexity Low_complexity 1 25 0 180 125 0 0 chr1 261782232 261782264 -20411400 + (T)n Simple_repeat Simple_repeat 1 32 0 256 254 18 0 chr1 261783579 261783634 -20410030 + MER5A DNA MER1_type 86 141 -48 288 223 446 11 chr1 261783959 261784134 -20409530 - MIR SINE MIR 0 262 12 1245 151 5 0 chr1 261784364 261784549 -20409115 - AluJo SINE Alu -126 186 1 390 308 103 19 chr1 261784573 261784787 -20408877 - L1MEc LINE L1 -4912 1398 1167 815 135 0 0 chr1 261784822 261784933 -20408731 + FRAM SINE Alu 37 147 -29 419 0 0 19 chr1 261784933 261784985 -20408679 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 822 352 52 38 chr1 261785022 261785635 -20408029 - L1MEc LINE L1 -5017 1102 481 372 291 80 76 chr1 261785663 261785938 -20407726 - L1MEc LINE L1 -5778 341 66 742 316 70 8 chr1 261786074 261786431 -20407233 - L1MEd LINE L1 -5291 828 450 2076 88 0 0 chr1 261786490 261786750 -20406914 - AluSc SINE Alu -49 260 1 212 352 31 37 chr1 261786817 261786979 -20406685 + L2 LINE L2 2687 2847 -467 252 339 121 34 chr1 261787184 261787530 -20406134 + L2 LINE L2 2437 2840 -474 2022 131 6 10 chr1 261787530 261787843 -20405821 - AluSx SINE Alu 0 312 1 252 339 121 34 chr1 261787843 261787994 -20405670 + L2 LINE L2 2840 2977 -337 237 130 52 43 chr1 261787996 261788111 -20405553 + CT-rich Low_complexity Low_complexity 3 118 0 1589 134 47 22 chr1 261788113 261788388 -20405276 - AluJo SINE Alu -27 285 4 575 174 0 0 chr1 261789608 261789700 -20403964 - AluJ/FLAM SINE Alu -220 92 1 7431 156 68 73 chr1 261789703 261790383 -20403281 - L1MCa LINE L1 -4612 1995 1313 649 222 0 0 chr1 261790383 261790509 -20403155 - FLAM_A SINE Alu -4 129 4 7431 156 68 73 chr1 261790509 261791314 -20402350 - L1MCa LINE L1 -5294 1313 332 1638 167 94 0 chr1 261791314 261791590 -20402074 - AluSx SINE Alu -10 302 1 7431 156 68 73 chr1 261791590 261791905 -20401759 - L1MCa LINE L1 -6275 332 17 22 56 0 0 chr1 261792022 261792058 -20401606 + AT_rich Low_complexity Low_complexity 1 36 0 368 286 167 43 chr1 261792562 261792666 -20400998 + L2 LINE L2 3046 3136 -177 243 0 0 0 chr1 261792666 261792693 -20400971 + (TG)n Simple_repeat Simple_repeat 2 28 0 368 286 167 43 chr1 261792693 261792742 -20400922 + L2 LINE L2 3136 3178 -135 2325 65 10 0 chr1 261792742 261793048 -20400616 - AluY SINE Alu -2 309 1 368 286 167 43 chr1 261793048 261793127 -20400537 + L2 LINE L2 3178 3308 -5 236 179 63 84 chr1 261793203 261793298 -20400366 - L2 LINE L2 -103 3210 3118 24 32 0 0 chr1 261794411 261794442 -20399222 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 261794992 261795014 -20398650 + AT_rich Low_complexity Low_complexity 1 22 0 374 233 60 67 chr1 261795049 261795199 -20398465 - HAL1 LINE L1 -1683 824 676 23 68 0 0 chr1 261795538 261795582 -20398082 + AT_rich Low_complexity Low_complexity 1 44 0 382 312 56 56 chr1 261796017 261796232 -20397432 - MIR SINE MIR 0 262 48 194 307 0 27 chr1 261796255 261796330 -20397334 + MIR SINE MIR 163 235 -27 349 194 117 29 chr1 261796592 261796695 -20396969 - L1ME LINE L1 -301 5820 5709 187 231 0 39 chr1 261797057 261797109 -20396555 - L2 LINE L2 -2 3311 3262 23 0 0 0 chr1 261797695 261797718 -20395946 + AT_rich Low_complexity Low_complexity 1 23 0 236 129 0 86 chr1 261798124 261798194 -20395470 + (TTAA)n Simple_repeat Simple_repeat 1 64 0 190 333 0 13 chr1 261798578 261798653 -20395011 - MIR SINE MIR -111 151 78 33 88 0 22 chr1 261799681 261799817 -20393847 + AT_rich Low_complexity Low_complexity 1 133 0 2650 73 0 3 chr1 261800100 261800444 -20393220 - L1PA6 LINE L1 -11 6143 5801 3143 148 25 13 chr1 261800820 261801342 -20392322 + MER50 LTR ERV1 182 709 -25 4531 143 19 1 chr1 261801386 261802086 -20391578 + MER50-int LTR ERV1 4 715 -6490 2096 122 33 12 chr1 261802086 261802422 -20391242 + MER61A LTR ERV1 1 343 0 4017 124 90 35 chr1 261802422 261803158 -20390506 + MER61A-int LTR ERV1 1 776 -4441 * 13228 87 16 12 chr1 261803152 261805127 -20388537 + MER61A-int LTR ERV1 1320 3347 -1870 1568 178 7 17 chr1 261805574 261805861 -20387803 + AluSx SINE Alu 12 295 -17 1708 148 7 39 chr1 261805880 261806185 -20387479 + AluJo SINE Alu 18 312 0 226 385 10 0 chr1 261806898 261807002 -20386662 + L2 LINE L2 2616 2720 -594 351 257 27 47 chr1 261807406 261807554 -20386110 - L2 LINE L2 -65 3248 3104 2254 208 50 138 chr1 261807555 261808777 -20384887 - L1M2 LINE L1 -5735 1114 1 308 233 33 0 chr1 261808838 261808988 -20384676 + (TCTCTG)n Simple_repeat Simple_repeat 2 156 0 736 254 13 54 chr1 261811531 261811755 -20381909 - MER58C DNA MER1_type 0 215 1 222 376 43 11 chr1 261811941 261812034 -20381630 + L2 LINE L2 2978 3073 -199 356 244 12 12 chr1 261812127 261812213 -20381451 + L2 LINE L2 3187 3272 0 * 384 257 44 18 chr1 261812205 261812318 -20381346 + L2 LINE L2 3194 3309 -4 1396 195 58 7 chr1 261812398 261812690 -20380974 - MER61A LTR ERV1 -28 315 9 18592 87 37 8 chr1 261812703 261815322 -20378342 - MER61A-int LTR ERV1 0 5217 2524 4061 240 106 26 chr1 261815452 261816715 -20376949 + L1ME LINE L1 420 1581 -4499 2123 62 0 0 chr1 261816715 261816973 -20376691 + AluY SINE Alu 41 298 -13 4061 240 106 26 chr1 261816973 261818289 -20375375 + L1ME LINE L1 1581 3239 -2841 2163 136 0 3 chr1 261818289 261818599 -20375065 + AluSx SINE Alu 1 309 -3 4061 240 106 26 chr1 261818599 261818948 -20374716 + L1ME LINE L1 3239 3559 -2521 1501 161 24 4 chr1 261818948 261819342 -20374322 + LTR47A LTR ERVL 1 452 0 1935 228 63 8 chr1 261819343 261819866 -20373798 + L1ME LINE L1 3556 4107 -1973 1594 227 12 39 chr1 261819876 261820140 -20373524 + L1ME LINE L1 4317 4562 -1518 2494 75 0 0 chr1 261820140 261820448 -20373216 + AluY SINE Alu 1 308 -3 1594 227 12 39 chr1 261820448 261820699 -20372965 + L1ME LINE L1 4562 4818 -1262 1121 100 0 7 chr1 261820802 261820952 -20372712 - AluSq/x SINE Alu -164 149 1 2101 97 33 7 chr1 261821190 261821489 -20372175 - AluSc SINE Alu -1 308 2 344 194 161 21 chr1 261821738 261821831 -20371833 - L2 LINE L2 0 3313 3208 3921 54 4 15 chr1 261821841 261822124 -20371540 - L1P3 LINE L1 -371 5801 5525 2204 90 3 3 chr1 261822124 261822414 -20371250 + AluSc SINE Alu 1 290 -19 3921 54 4 15 chr1 261822414 261822650 -20371014 - L1P3 LINE L1 -647 5525 5288 2797 40 20 0 chr1 261822650 261822994 -20370670 + L1PA8 LINE L1 5816 6169 -3 563 267 226 19 chr1 261822994 261823264 -20370400 - L2 LINE L2 -108 3205 2880 1746 168 6 25 chr1 261823323 261823638 -20370026 - AluJb SINE Alu -3 309 1 1029 83 39 0 chr1 261823687 261823856 -20369808 - L1PA3 LINE L1 0 6168 6013 477 227 76 107 chr1 261824162 261824444 -20369220 - L1ME LINE L1 -5422 661 375 10890 190 32 31 chr1 261824463 261826970 -20366694 - L1MC1 LINE L1 -88 6525 4021 1691 171 0 58 chr1 261826970 261827297 -20366367 - AluJo SINE Alu -4 308 1 10890 190 32 31 chr1 261827297 261828419 -20365245 - L1MC1 LINE L1 -2592 4021 2901 1405 132 25 34 chr1 261828419 261828654 -20365010 + MER46A DNA MER2_type 1 233 -3 10890 190 32 31 chr1 261828654 261828853 -20364811 - L1MC1 LINE L1 -3712 2901 2692 1923 168 3 0 chr1 261828853 261829163 -20364501 - AluJo SINE Alu -1 311 1 10890 190 32 31 chr1 261829163 261829250 -20364414 - L1MC1 LINE L1 -3921 2692 2607 821 199 0 114 chr1 261829248 261829519 -20364145 - L1M4 LINE L1 -755 5391 5152 * 2407 136 89 30 chr1 261829539 261830013 -20363651 - L1MC1 LINE L1 -3947 2479 2035 2018 148 3 0 chr1 261830013 261830318 -20363346 - AluSq SINE Alu -7 306 1 2407 136 89 30 chr1 261830318 261830411 -20363253 - L1MC1 LINE L1 -4391 2035 1986 2038 129 0 40 chr1 261830411 261830736 -20362928 - AluSx SINE Alu 0 312 1 2407 136 89 30 chr1 261830736 261830823 -20362841 - L1MC1 LINE L1 -4440 1986 1906 3125 201 45 19 chr1 261831016 261832314 -20361350 - L1MD2 LINE L1 -465 5894 4580 1220 133 0 11 chr1 261832314 261832494 -20361170 - MER4A LTR ERV1 0 664 487 6494 102 4 21 chr1 261832530 261833483 -20360181 - MER11C LTR ERVK -14 1057 121 257 271 14 0 chr1 261833541 261833611 -20360053 + MIR SINE MIR 85 155 -107 994 66 0 0 chr1 261833734 261833856 -20359808 - MER11B LTR ERVK -1114 122 1 610 150 277 127 chr1 261833856 261834064 -20359600 - MER4A LTR ERV1 -169 495 256 639 131 0 10 chr1 261834059 261834158 -20359506 - MER4A LTR ERV1 -566 98 1 2356 232 36 7 chr1 261834158 261834766 -20358898 - L1MD2 LINE L1 -1563 4583 3958 427 289 80 25 chr1 261834786 261834987 -20358677 - L2 LINE L2 -623 2691 2480 548 403 19 94 chr1 261835072 261835432 -20358232 - MLT1J LTR MaLR -69 442 110 262 310 18 26 chr1 261835522 261835635 -20358029 - L2 LINE L2 -1411 1903 1792 222 286 0 0 chr1 261835674 261835744 -20357920 + L2 LINE L2 1700 1769 -1545 188 222 42 56 chr1 261835759 261835831 -20357833 - L2 LINE L2 -1639 1675 1605 387 209 98 20 chr1 261835871 261836009 -20357655 + MLT2F LTR ERVL 255 661 -2 765 213 92 0 chr1 261836189 261836363 -20357301 + MER63A DNA MER1_type 1 190 -20 584 137 11 0 chr1 261836880 261836975 -20356689 + FLAM_C SINE Alu 23 118 -25 216 0 0 0 chr1 261836975 261836999 -20356665 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4183 166 55 35 chr1 261837041 261837957 -20355707 + L1MB5 LINE L1 4832 5777 -397 2065 146 0 0 chr1 261837957 261838259 -20355405 + AluSx SINE Alu 11 312 0 4183 166 55 35 chr1 261838259 261838660 -20355004 + L1MB5 LINE L1 5777 6168 -6 2036 130 0 0 chr1 261839482 261839788 -20353876 + AluSx SINE Alu 1 306 0 544 214 8 8 chr1 261839811 261839928 -20353736 + FLAM_A SINE Alu 11 127 -15 427 250 10 0 chr1 261840402 261840498 -20353166 + L2 LINE L2 3217 3313 0 257 385 83 19 chr1 261840677 261840833 -20352831 + L2 LINE L2 3099 3264 -8 1055 188 0 6 chr1 261842141 261842322 -20351342 + AluJb SINE Alu 129 308 -4 442 259 76 32 chr1 261842666 261842824 -20350840 + LTR67 LTR ERVL 373 537 -20 234 226 0 19 chr1 261842944 261842997 -20350667 + MER5B DNA MER1_type 1 52 -126 300 171 114 14 chr1 261843038 261843108 -20350556 - L2 LINE L2 0 3272 3196 303 299 23 0 chr1 261843209 261843296 -20350368 + L1MC4 LINE L1 6615 6703 -1339 * 359 278 0 0 chr1 261843218 261843308 -20350356 - L1MC4 LINE L1 -1339 6703 6614 1044 245 72 36 chr1 261843653 261843970 -20349694 + LTR40b LTR ERVL 1 334 -128 3859 104 57 0 chr1 261843970 261844547 -20349117 - MER4B LTR ERV1 0 610 1 1044 245 72 36 chr1 261844547 261844588 -20349076 + LTR40b LTR ERVL 334 372 -90 253 286 0 0 chr1 261844677 261844740 -20348924 - MER96 DNA MER1_type? -112 63 1 1384 194 21 65 chr1 261844796 261845168 -20348496 - L1MEc LINE L1 -6015 381 26 963 166 13 0 chr1 261845212 261845363 -20348301 - FRAM SINE Alu -13 153 1 2193 138 0 0 chr1 261845646 261845950 -20347714 - AluSx SINE Alu -8 304 1 2005 144 0 3 chr1 261845956 261846255 -20347409 - AluSx SINE Alu -14 298 1 578 263 31 19 chr1 261846346 261846506 -20347158 - MIR SINE MIR -30 232 71 1461 165 56 11 chr1 261847276 261847561 -20346103 - AluJb SINE Alu -14 298 1 395 246 36 9 chr1 261848115 261848225 -20345439 + MIR SINE MIR 150 262 0 1409 192 36 23 chr1 261848365 261848673 -20344991 - AluJo SINE Alu 0 312 1 35 24 0 0 chr1 261849168 261849210 -20344454 + AT_rich Low_complexity Low_complexity 1 42 0 379 39 19 0 chr1 261850087 261850139 -20343525 - L1PA6 LINE L1 -3 6151 6099 585 217 47 57 chr1 261850352 261850564 -20343100 - L1MC5 LINE L1 -47 7914 7705 234 246 87 14 chr1 261850701 261850770 -20342894 + MIR3 SINE MIR 114 187 -21 22 0 0 0 chr1 261851724 261851746 -20341918 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chr1 261851820 261851884 -20341780 + AT_rich Low_complexity Low_complexity 1 64 0 27 49 0 0 chr1 261851932 261851973 -20341691 + AT_rich Low_complexity Low_complexity 1 41 0 252 189 0 0 chr1 261852588 261852662 -20341002 + A-rich Low_complexity Low_complexity 1 74 0 257 277 70 16 chr1 261853646 261853888 -20339776 - L1ME4a LINE L1 -206 5915 5661 449 305 130 9 chr1 261904492 261904807 -20288857 + L2 LINE L2 2851 3203 -110 565 166 230 0 chr1 261904834 261904973 -20288691 + LTR33 LTR ERVL 101 271 -250 302 191 48 0 chr1 261904978 261905041 -20288623 + LTR33 LTR ERVL 449 514 -7 283 0 47 23 chr1 261905200 261905243 -20288421 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1947 229 103 17 chr1 261905245 261905848 -20287816 + L1M4 LINE L1 2283 2937 -3209 2414 84 7 0 chr1 261905848 261906145 -20287519 + AluSx SINE Alu 1 299 -13 1619 39 0 0 chr1 261906254 261906433 -20287231 - AluY SINE Alu -132 179 1 2091 128 13 22 chr1 261906441 261906754 -20286910 - AluJb SINE Alu -2 310 1 2216 113 0 0 chr1 261906874 261907184 -20286480 - AluSx SINE Alu 0 310 1 1037 163 6 18 chr1 261907250 261907416 -20286248 + FRAM SINE Alu 1 159 -17 1209 185 0 23 chr1 261907570 261907786 -20285878 + AluJo SINE Alu 84 294 -18 510 152 45 18 chr1 261908572 261908684 -20284980 + MER4C LTR ERV1 1 115 -350 1007 302 75 10 chr1 261908835 261909249 -20284415 + MLT1K LTR MaLR 147 587 -1 801 294 161 50 chr1 261910041 261910629 -20283035 + L2 LINE L2 2592 3233 -39 737 285 40 4 chr1 261910629 261910878 -20282786 - MIR SINE MIR 0 262 5 801 294 161 50 chr1 261910878 261910922 -20282742 + L2 LINE L2 3233 3271 -1 1254 162 34 0 chr1 261911356 261911622 -20282042 - Charlie5 DNA MER1_type -103 2509 2235 23 33 0 0 chr1 261911629 261911659 -20282005 + AT_rich Low_complexity Low_complexity 1 30 0 2301 80 3 23 chr1 261911668 261911968 -20281696 + AluSc SINE Alu 1 294 -15 1352 217 73 0 chr1 261911978 261912102 -20281562 + AluJo SINE Alu 1 114 -198 254 29 29 0 chr1 261912102 261912137 -20281527 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1352 217 73 0 chr1 261912137 261912284 -20281380 + AluJo SINE Alu 114 292 -20 810 160 15 0 chr1 261912327 261912458 -20281206 - FLAM_C SINE Alu 0 133 1 1901 272 72 18 chr1 261912584 261913107 -20280557 - ERVL LTR ERVL -1544 4220 3726 2149 91 31 3 chr1 261913107 261913394 -20280270 - AluSx SINE Alu -17 295 1 1901 272 72 18 chr1 261913394 261913897 -20279767 - ERVL LTR ERVL -2038 3726 3060 31 0 0 0 chr1 261913897 261913928 -20279736 + AT_rich Low_complexity Low_complexity 1 31 0 2270 66 42 0 chr1 261913928 261914214 -20279450 - AluY SINE Alu -13 298 1 248 121 0 35 chr1 261914220 261914278 -20279386 + MER113 DNA MER1_type? 75 130 -391 2333 118 32 11 chr1 261914398 261914770 -20278894 - MER1A DNA MER1_type -148 381 2 1237 120 19 19 chr1 261914771 261914980 -20278684 - Tigger3(Golem) DNA MER2_type -2820 209 1 216 97 0 0 chr1 261914995 261915026 -20278638 + (T)n Simple_repeat Simple_repeat 1 31 0 347 109 0 0 chr1 261915343 261915398 -20278266 - Alu SINE Alu -2 298 244 1101 119 48 0 chr1 261915398 261915566 -20278098 + AluSg/x SINE Alu 134 309 -1 2141 134 3 10 chr1 261915993 261916307 -20277357 + AluSx SINE Alu 1 312 0 377 262 87 74 chr1 261916652 261916771 -20276893 - L1ME4a LINE L1 -7 6114 5998 1569 196 10 27 chr1 261916771 261917072 -20276592 - AluJb SINE Alu -16 296 1 207 0 0 0 chr1 261917074 261917097 -20276567 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 1376 166 30 68 chr1 261917098 261917393 -20276271 - AluJb SINE Alu -28 284 1 377 262 87 74 chr1 261917393 261917417 -20276247 - L1ME4a LINE L1 -122 5999 5964 634 271 0 0 chr1 261917498 261917631 -20276033 - FLAM_A SINE Alu 0 133 1 1804 116 12 12 chr1 261917786 261918036 -20275628 - AluSx SINE Alu -62 250 1 507 253 19 99 chr1 261918698 261918816 -20274848 + L1MC5 LINE L1 6675 6801 -1160 2290 126 0 0 chr1 261918816 261919125 -20274539 + AluSx SINE Alu 1 309 -3 507 253 19 99 chr1 261919125 261919318 -20274346 + L1MC5 LINE L1 6801 6961 -1000 2580 49 0 16 chr1 261919498 261919803 -20273861 + AluY SINE Alu 1 300 -11 724 305 97 28 chr1 261919922 261920312 -20273352 - L3 LINE CR1 0 1577 1161 321 353 139 0 chr1 261920296 261920483 -20273181 + MIR SINE MIR 49 261 -1 * 515 300 53 69 chr1 261920522 261920769 -20272895 - L3 LINE CR1 -433 1144 902 2293 102 0 3 chr1 261920786 261921079 -20272585 + AluSp SINE Alu 1 292 -21 2231 122 0 0 chr1 261921107 261921402 -20272262 + AluSg SINE Alu 6 300 -10 204 254 17 0 chr1 261921582 261921641 -20272023 - MIR SINE MIR -35 227 168 2038 133 0 61 chr1 261921903 261922233 -20271431 - AluSx SINE Alu -2 310 1 7338 50 6 29 chr1 261922277 261923220 -20270444 - SVA Other Other 0 1386 465 1880 187 3 32 chr1 261923329 261923547 -20270117 - MLT1A1 LTR MaLR -2 363 159 1672 166 53 7 chr1 261923547 261923831 -20269833 - AluJb SINE Alu -15 297 1 1880 187 3 32 chr1 261923831 261923986 -20269678 - MLT1A1 LTR MaLR -206 159 1 324 263 191 28 chr1 261924109 261924467 -20269197 - L2 LINE L2 -289 2983 2554 2063 141 20 13 chr1 261924765 261925071 -20268593 - AluJo SINE Alu -4 308 1 1914 82 12 8 chr1 261925170 261925426 -20268238 + AluSx SINE Alu 51 307 -5 1851 133 0 0 chr1 261925586 261925834 -20267830 - AluSx SINE Alu -64 248 1 1382 112 31 49 chr1 261925843 261926006 -20267658 - AluSg/x SINE Alu -10 300 136 2253 102 10 7 chr1 261926006 261926310 -20267354 - AluSg SINE Alu -5 305 1 2278 121 0 0 chr1 261926310 261926608 -20267056 - AluSx SINE Alu -14 298 1 1382 112 31 49 chr1 261926608 261926666 -20266998 - AluSg/x SINE Alu -172 138 82 940 149 86 46 chr1 261926669 261926877 -20266787 + AluJb SINE Alu 104 318 0 2251 104 3 0 chr1 261927125 261927414 -20266250 + AluSx SINE Alu 9 298 -14 2309 92 0 13 chr1 261928701 261929007 -20264657 - AluSq SINE Alu -11 302 1 279 211 106 12 chr1 261929696 261929781 -20263883 - MER5A DNA MER1_type -58 121 34 2166 243 70 39 chr1 261929892 261930768 -20262896 + L1MC5 LINE L1 7011 7913 -48 2444 44 3 20 chr1 261931983 261932308 -20261356 + AluY SINE Alu 1 320 0 213 115 39 19 chr1 261932805 261932857 -20260807 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 824 142 16 0 chr1 261932861 261932988 -20260676 + FLAM_C SINE Alu 1 129 -4 356 180 16 0 chr1 261933642 261933722 -20259942 + L1MB8 LINE L1 5861 5945 -256 2294 105 3 6 chr1 261933726 261934039 -20259625 + AluSq SINE Alu 1 312 -1 2206 127 10 7 chr1 261934047 261934354 -20259310 + AluJb SINE Alu 5 312 0 1138 151 0 0 chr1 261934568 261934734 -20258930 - AluSg/x SINE Alu -12 298 133 2580 60 0 0 chr1 261934747 261935046 -20258618 - AluY SINE Alu -12 299 1 2460 66 26 3 chr1 261937993 261938297 -20255367 + AluSq SINE Alu 1 311 -2 30 27 0 0 chr1 261939039 261939076 -20254588 + GC_rich Low_complexity Low_complexity 1 37 0 24 103 0 0 chr1 261939097 261939184 -20254480 + GC_rich Low_complexity Low_complexity 1 87 0 353 187 93 0 chr1 261939586 261939661 -20254003 - MLT1D LTR MaLR -75 430 349 2358 86 3 16 chr1 261939674 261939978 -20253686 - AluSg SINE Alu -10 300 1 656 178 274 5 chr1 261939994 261940213 -20253451 - MLT1D LTR MaLR -226 279 2 452 276 0 53 chr1 261940300 261940452 -20253212 - HAL1 LINE L1 -31 2476 2333 21 0 0 0 chr1 261940459 261940480 -20253184 + AT_rich Low_complexity Low_complexity 1 21 0 326 290 183 15 chr1 261940508 261940639 -20253025 - HAL1 LINE L1 -295 2212 2060 665 249 91 42 chr1 261940720 261940985 -20252679 - HAL1 LINE L1 -694 1813 1536 2092 107 37 7 chr1 261941002 261941301 -20252363 - AluSx SINE Alu 0 312 5 2370 98 0 3 chr1 261941334 261941641 -20252023 - AluSx SINE Alu -6 306 1 301 304 0 0 chr1 261941676 261941745 -20251919 - HAL1 LINE L1 -2437 70 2 1389 152 0 0 chr1 261941956 261942153 -20251511 + AluSg/x SINE Alu 103 299 -10 316 197 0 0 chr1 261942153 261942214 -20251450 + Charlie5 DNA MER1_type 2522 2582 -30 1624 278 127 12 chr1 261942222 261942913 -20250751 - L2 LINE L2 -1136 2178 1408 2377 107 60 95 chr1 261943293 261943563 -20250101 - Tigger3(Golem) DNA MER2_type 0 3029 2751 2279 122 0 10 chr1 261943563 261943874 -20249790 + AluSx SINE Alu 1 308 -4 2633 48 0 10 chr1 261943876 261944186 -20249478 + AluY SINE Alu 1 307 -4 2377 107 60 95 chr1 261944186 261944207 -20249457 - Tigger3(Golem) DNA MER2_type -279 2750 2730 898 205 13 0 chr1 261944207 261944388 -20249276 + FAM SINE Alu 1 47 0 2377 107 60 95 chr1 261944388 261944575 -20249089 - Tigger3(Golem) DNA MER2_type -299 2730 2561 1811 166 21 0 chr1 261944576 261944865 -20248799 + AluJb SINE Alu 1 295 -17 563 202 11 0 chr1 261944865 261944959 -20248705 + AluSc SINE Alu 107 201 -108 2217 106 0 0 chr1 261945065 261945373 -20248291 - AluSq SINE Alu 0 308 1 1813 151 7 49 chr1 261945374 261945535 -20248129 - AluSg SINE Alu -18 292 149 2290 113 3 0 chr1 261945535 261945846 -20247818 - AluSx SINE Alu 0 312 1 1813 151 7 49 chr1 261945846 261945989 -20247675 - AluSg SINE Alu -161 149 1 2362 93 3 3 chr1 261945995 261946307 -20247357 - AluSx SINE Alu 0 312 1 3487 235 91 39 chr1 261947334 261948276 -20245388 - L2 LINE L2 -157 3156 2127 2674 42 7 0 chr1 261948276 261948585 -20245079 + AluY SINE Alu 1 311 0 3487 235 91 39 chr1 261948585 261948908 -20244756 - L2 LINE L2 -1186 2127 1822 2334 100 0 3 chr1 261949060 261949360 -20244304 + AluSx SINE Alu 1 299 -13 1387 98 0 0 chr1 261949360 261949533 -20244131 + AluSg/x SINE Alu 132 304 -6 2528 61 0 3 chr1 261949533 261949829 -20243835 + AluY SINE Alu 1 295 -16 917 165 0 35 chr1 261949832 261950002 -20243662 + AluJo/FRAM SINE Alu 137 300 -2 576 268 62 0 chr1 261950010 261950253 -20243411 + L1M4 LINE L1 2350 2607 -3539 1457 241 74 54 chr1 261950356 261950913 -20242751 + L2 LINE L2 2274 2841 -473 842 221 13 0 chr1 261950915 261951073 -20242591 - FRAM SINE Alu -2 164 5 1713 129 15 111 chr1 261951089 261951277 -20242387 - AluSx SINE Alu 0 302 158 1957 115 4 0 chr1 261951277 261951537 -20242127 - AluSq SINE Alu -24 289 29 1713 129 15 111 chr1 261951537 261951682 -20241982 - AluSx SINE Alu -144 158 1 638 164 0 27 chr1 261951734 261951844 -20241820 - FLAM_C SINE Alu -27 116 10 979 237 177 48 chr1 261951858 261952276 -20241388 + L2 LINE L2 2842 3313 0 231 242 42 0 chr1 261952767 261952862 -20240802 + (CGGG)n Simple_repeat Simple_repeat 4 102 0 24 0 0 0 chr1 261954403 261954427 -20239237 + AT_rich Low_complexity Low_complexity 1 24 0 1447 83 0 0 chr1 261954732 261954912 -20238752 - AluSg/x SINE Alu 0 312 133 393 22 0 0 chr1 261954914 261954960 -20238704 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 2383 66 0 17 chr1 261954960 261955247 -20238417 - AluY SINE Alu -29 282 1 622 98 0 0 chr1 261955286 261955368 -20238296 - AluSp/q SINE Alu -14 299 218 1018 140 0 6 chr1 261956508 261956665 -20236999 + AluSg/x SINE Alu 154 309 0 596 272 74 15 chr1 261956692 261956961 -20236703 + MLT1G3 LTR MaLR 155 529 -66 242 160 0 40 chr1 261957030 261957080 -20236584 + MLT1G3 LTR MaLR 543 590 0 718 294 65 65 chr1 261957228 261957279 -20236385 + MLT1J LTR MaLR 12 62 -449 2256 81 0 56 chr1 261957279 261957599 -20236065 - AluSg SINE Alu -8 302 1 718 294 65 65 chr1 261957599 261958043 -20235621 + MLT1J LTR MaLR 61 507 -4 1236 118 0 0 chr1 261958632 261958829 -20234835 - AluSg/x SINE Alu 0 324 128 2346 122 0 0 chr1 261959064 261959376 -20234288 - AluSx SINE Alu 0 312 1 281 325 17 0 chr1 261959397 261959517 -20234147 + MLT1K LTR MaLR 141 262 -326 232 118 0 0 chr1 261959745 261959779 -20233885 + MLT1K LTR MaLR 539 572 -16 570 184 47 50 chr1 261959789 261959832 -20233832 + MIR SINE MIR 23 65 -182 781 209 41 12 chr1 261959832 261960004 -20233660 - MER104 DNA MER2_type 0 180 4 570 184 47 50 chr1 261960004 261960112 -20233552 + MIR SINE MIR 65 185 -62 333 89 0 0 chr1 261960118 261960175 -20233489 + L1M4 LINE L1 5683 5739 -445 2055 151 0 10 chr1 261960175 261960479 -20233185 + AluJb SINE Alu 1 301 -11 2279 103 10 10 chr1 261960651 261960962 -20232702 + AluSq SINE Alu 1 311 -2 192 274 105 21 chr1 261960978 261961073 -20232591 - L2 LINE L2 -718 2596 2494 311 163 130 22 chr1 261961304 261961396 -20232268 + MIR SINE MIR 88 189 -73 24 32 0 0 chr1 261961635 261961666 -20231998 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1 261963523 261963544 -20230120 + AT_rich Low_complexity Low_complexity 1 21 0 1086 147 0 0 chr1 261964329 261964492 -20229172 + AluSg/x SINE Alu 131 293 -17 239 340 140 30 chr1 261965888 261966123 -20227541 + L2 LINE L2 2958 3218 -54 1637 195 186 23 chr1 261966244 261966686 -20226978 + MLT1F LTR MaLR 1 514 -28 915 146 67 24 chr1 261966688 261966853 -20226811 - FRAM SINE Alu -10 166 1 21 0 0 0 chr1 261966868 261966889 -20226775 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 261967495 261967526 -20226138 + AT_rich Low_complexity Low_complexity 1 31 0 2317 117 3 0 chr1 261967608 261967917 -20225747 + AluSq SINE Alu 1 310 -3 21 36 0 0 chr1 261968635 261968663 -20225001 + GC_rich Low_complexity Low_complexity 1 28 0 198 318 127 32 chr1 261968817 261968943 -20224721 - MIR SINE MIR -68 194 57 663 146 15 8 chr1 261970813 261970943 -20222721 - L1M4b LINE L1 -5380 1479 1349 1504 143 162 0 chr1 261970943 261971202 -20222462 + AluJb SINE Alu 1 301 -1 456 192 0 0 chr1 261971338 261971416 -20222248 - AluJ/FLAM SINE Alu -232 80 3 2152 133 7 0 chr1 261972783 261973085 -20220579 - AluSx SINE Alu -8 304 1 215 213 0 0 chr1 261973100 261973147 -20220517 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 213 39 0 0 chr1 261973190 261973216 -20220448 + (GA)n Simple_repeat Simple_repeat 1 26 0 630 210 83 134 chr1 261973957 261974263 -20219401 + LTR34 LTR ERV1 126 479 -220 1892 119 0 0 chr1 261974263 261974515 -20219149 - AluSx SINE Alu -60 252 1 630 210 83 134 chr1 261974515 261974722 -20218942 + LTR34 LTR ERV1 479 695 -4 618 255 88 76 chr1 261974723 261974986 -20218678 + MLT1I LTR MaLR 142 407 -2 23 0 0 0 chr1 261975128 261975151 -20218513 + AT_rich Low_complexity Low_complexity 1 23 0 1733 179 7 20 chr1 261975154 261975456 -20218208 - AluJo SINE Alu -14 298 1 2188 116 0 20 chr1 261975777 261976080 -20217584 + AluSx SINE Alu 1 297 -15 686 180 8 0 chr1 261976107 261976229 -20217435 + FLAM_C SINE Alu 15 137 -6 504 275 168 51 chr1 261976605 261976812 -20216852 - L2 LINE L2 -34 3279 3021 1043 152 0 29 chr1 261976812 261976983 -20216681 - FRAM SINE Alu 0 166 1 504 275 168 51 chr1 261976983 261977091 -20216573 - L2 LINE L2 -292 3021 2927 484 287 126 9 chr1 261977254 261977466 -20216198 - MIR SINE MIR -31 231 3 635 163 8 41 chr1 261977750 261977873 -20215791 + FLAM_C SINE Alu 1 119 -24 27 29 0 0 chr1 261977873 261977907 -20215757 + AT_rich Low_complexity Low_complexity 1 34 0 377 292 42 21 chr1 261978077 261978221 -20215443 - MIR3 SINE MIR -61 147 1 2348 86 3 0 chr1 261978860 261979152 -20214512 + AluSq SINE Alu 1 293 -20 2047 128 40 0 chr1 261979407 261979705 -20213959 - AluSq SINE Alu -3 310 1 183 42 0 0 chr1 261979877 261979901 -20213763 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 988 171 0 13 chr1 261979901 261980059 -20213605 - FAM SINE Alu -19 156 1 228 220 0 20 chr1 261981009 261981059 -20212605 + G-rich Low_complexity Low_complexity 1 49 0 421 202 22 45 chr1 261981730 261981819 -20211845 - MIR SINE MIR -118 144 58 182 62 31 0 chr1 261982411 261982443 -20211221 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2107 129 3 0 chr1 261982445 261982732 -20210932 - AluSx SINE Alu -24 288 1 26 50 0 0 chr1 261984009 261984049 -20209615 + GC_rich Low_complexity Low_complexity 1 40 0 408 40 0 0 chr1 261984521 261984571 -20209093 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 450 250 17 0 chr1 261984604 261984720 -20208944 - L1ME LINE L1 -399 5767 5650 201 195 0 0 chr1 261984963 261985004 -20208660 + T-rich Low_complexity Low_complexity 1 41 0 * 599 208 11 11 chr1 261984999 261985177 -20208487 + CT-rich Low_complexity Low_complexity 3 180 0 1526 184 0 0 chr1 261985182 261985427 -20208237 - AluJo SINE Alu -32 280 36 771 250 85 18 chr1 261985595 261985819 -20207845 + MIR SINE MIR 21 259 -3 353 225 153 9 chr1 261986031 261986142 -20207522 - L1ME4a LINE L1 0 6121 5995 535 240 104 0 chr1 261986339 261986493 -20207171 + L1MC4a LINE L1 5742 5911 -1897 1958 169 0 13 chr1 261986494 261986807 -20206857 - AluJb SINE Alu -3 309 1 1952 102 0 111 chr1 261987027 261987360 -20206304 - AluSx SINE Alu -16 296 1 263 346 37 0 chr1 261987428 261987509 -20206155 + L2 LINE L2 3189 3272 0 2236 129 0 3 chr1 261987721 261988024 -20205640 + AluJb SINE Alu 1 302 -10 232 180 0 40 chr1 261988101 261988151 -20205513 - L2 LINE L2 -2 3311 3264 875 225 121 4 chr1 261988202 261988482 -20205182 - MER20B DNA MER1_type -3 780 468 649 229 170 5 chr1 261988552 261988770 -20204894 - MER20B DNA MER1_type -447 336 83 74 90 0 0 chr1 261989265 261989465 -20204199 + AT_rich Low_complexity Low_complexity 1 200 0 1800 167 7 33 chr1 261989474 261989773 -20203891 + AluJb SINE Alu 1 291 -21 22 80 0 0 chr1 261989776 261989826 -20203838 + AT_rich Low_complexity Low_complexity 1 50 0 225 0 0 0 chr1 261989974 261989999 -20203665 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2188 125 0 0 chr1 261991034 261991329 -20202335 - AluSg SINE Alu -15 295 1 297 109 0 0 chr1 261991400 261991446 -20202218 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 230 345 0 0 chr1 261991451 261991509 -20202155 - L2 LINE L2 -24 3248 3191 1620 158 42 24 chr1 261992186 261992522 -20201142 + L1MC3 LINE L1 7444 7785 0 2480 89 0 0 chr1 261993363 261993665 -20199999 - AluSx SINE Alu -10 302 1 2171 141 0 3 chr1 261993668 261993980 -20199684 - AluJb SINE Alu -1 311 1 1596 172 12 62 chr1 261994184 261994509 -20199155 - AluJo SINE Alu -1 311 3 2564 70 0 0 chr1 261994515 261994815 -20198849 - AluSg SINE Alu -10 300 1 277 367 77 34 chr1 261996146 261996353 -20197311 + L2 LINE L2 3057 3272 0 324 127 0 18 chr1 261996475 261996557 -20197107 - AluSq SINE Alu 0 301 234 1485 97 0 0 chr1 261996557 261996743 -20196921 - AluSq SINE Alu -127 186 1 297 271 0 0 chr1 261996759 261996829 -20196835 + MIR SINE MIR 73 142 -120 1714 136 52 39 chr1 261996863 261997149 -20196515 - AluJo SINE Alu -21 291 2 184 284 91 34 chr1 261997782 261997870 -20195794 + MIR SINE MIR 72 150 -58 256 288 30 0 chr1 261998237 261998303 -20195361 + MIR SINE MIR 86 153 -55 746 222 6 25 chr1 261998303 261998465 -20195199 + MER5B DNA MER1_type 3 161 -17 389 288 70 14 chr1 261999819 262000032 -20193632 - MIR SINE MIR -32 230 5 1728 132 113 0 chr1 262000313 262000579 -20193085 - AluSg SINE Alu -14 296 1 2284 109 30 21 chr1 262000810 262001240 -20192424 + SVA Other Other 432 865 -521 496 266 158 15 chr1 262001813 262002016 -20191648 + MIR SINE MIR 6 237 -25 27 0 0 0 chr1 262005177 262005204 -20188460 + GC_rich Low_complexity Low_complexity 1 27 0 246 268 18 27 chr1 262005231 262005343 -20188321 + C-rich Low_complexity Low_complexity 2 112 0 21 57 0 0 chr1 262005413 262005448 -20188216 + GC_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr1 262005612 262005648 -20188016 + GC_rich Low_complexity Low_complexity 1 36 0 185 196 54 71 chr1 262007000 262007056 -20186608 + MIR SINE MIR 119 173 -89 512 256 25 8 chr1 262007143 262007264 -20186400 - L2 LINE L2 -6 3307 3185 2020 152 17 0 chr1 262007462 262007759 -20185905 + AluSx SINE Alu 1 302 -10 205 216 50 108 chr1 262008019 262008158 -20185506 + L2 LINE L2 3110 3240 -73 473 210 91 45 chr1 262008219 262008395 -20185269 - L1MC5 LINE L1 -60 7901 7718 2324 98 0 3 chr1 262008489 262008786 -20184878 + AluSx SINE Alu 1 296 -16 452 301 255 25 chr1 262008801 262009337 -20184327 + L2 LINE L2 2353 3008 -305 2339 102 0 7 chr1 262009394 262009698 -20183966 + AluSq SINE Alu 1 302 -11 6645 120 73 26 chr1 262009896 262010026 -20183638 + Tigger1 DNA MER2_type 24 146 -2272 2382 91 0 0 chr1 262010026 262010322 -20183342 - AluSx SINE Alu -16 296 1 6645 120 73 26 chr1 262010322 262010335 -20183329 + Tigger1 DNA MER2_type 146 157 -2261 2095 135 0 7 chr1 262010335 262010631 -20183033 - AluSx SINE Alu -18 294 1 6645 120 73 26 chr1 262010631 262011657 -20182007 + Tigger1 DNA MER2_type 157 1249 -1169 2449 85 3 3 chr1 262011657 262011963 -20181701 - AluSp SINE Alu -7 306 1 431 171 11 11 chr1 262012422 262012510 -20181154 + MER53 DNA DNA 95 182 -7 * 546 128 0 0 chr1 262012436 262012522 -20181142 - MER53 DNA DNA -99 90 5 519 200 85 97 chr1 262013015 262013203 -20180461 + MIR SINE MIR 6 188 -63 1149 106 0 0 chr1 262013426 262013567 -20180097 + AluSq/x SINE Alu 1 141 -171 662 93 72 0 chr1 262013568 262013665 -20179999 + AluSc SINE Alu 192 295 -14 440 255 54 7 chr1 262014037 262014186 -20179478 - L1ME3A LINE L1 -275 5895 5740 210 71 0 0 chr1 262014262 262014290 -20179374 + (CA)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr1 262014860 262014887 -20178777 + AT_rich Low_complexity Low_complexity 1 27 0 2253 115 3 0 chr1 262014995 262015291 -20178373 - AluSp SINE Alu -16 297 1 1904 161 0 10 chr1 262015297 262015595 -20178069 - AluJo SINE Alu -17 295 1 279 206 67 138 chr1 262016199 262016409 -20177255 - MIR3 SINE MIR -70 192 2 704 214 252 5 chr1 262017371 262017577 -20176087 - MIR SINE MIR -1 261 5 2284 102 7 13 chr1 262017842 262018145 -20175519 - AluSx SINE Alu -10 302 2 2063 106 6 61 chr1 262018899 262019210 -20174454 - AluSq SINE Alu -19 294 1 222 298 35 21 chr1 262019303 262019444 -20174220 + CT-rich Low_complexity Low_complexity 5 147 0 352 346 45 0 chr1 262019809 262019942 -20173722 + L2 LINE L2 3134 3272 0 1956 153 0 14 chr1 262020551 262020845 -20172819 - AluJb SINE Alu -14 298 9 2039 105 53 36 chr1 262021591 262021895 -20171769 + AluSq SINE Alu 1 309 -4 2153 150 0 0 chr1 262022916 262023222 -20170442 - AluSx SINE Alu -6 306 1 1357 171 112 19 chr1 262023913 262024182 -20169482 - AluJb SINE Alu -18 294 1 1907 165 3 7 chr1 262024236 262024533 -20169131 - AluJb SINE Alu -11 301 6 1563 143 9 0 chr1 262024623 262024846 -20168818 - AluJb SINE Alu -87 225 1 340 264 148 66 chr1 262025010 262025192 -20168472 + MIR SINE MIR 3 199 -63 262 280 70 33 chr1 262025481 262025769 -20167895 + L1P5 LINE L1 5293 5587 -575 1176 178 47 40 chr1 262025790 262026088 -20167576 - MER44D DNA MER2_type -39 570 1 23 0 0 0 chr1 262027035 262027058 -20166606 + AT_rich Low_complexity Low_complexity 1 23 0 220 191 24 0 chr1 262027551 262027593 -20166071 + (CGG)n Simple_repeat Simple_repeat 2 44 0 261 264 85 57 chr1 262028153 262028259 -20165405 - MIR SINE MIR -70 192 84 661 217 111 9 chr1 262028262 262028479 -20165185 - MER69 DNA AcHobo -2 2524 2286 952 164 60 43 chr1 262028573 262028654 -20165010 - MER69 DNA AcHobo -231 2295 2217 2248 100 10 7 chr1 262028654 262028964 -20164700 - AluSx SINE Alu 0 312 2 952 164 60 43 chr1 262028964 262029163 -20164501 - MER69 DNA AcHobo -309 2217 2010 * 979 275 63 32 chr1 262029160 262029226 -20164438 - MER69 DNA AcHobo -1581 945 883 2541 54 0 3 chr1 262029226 262029524 -20164140 - AluY SINE Alu -14 297 1 979 275 63 32 chr1 262029524 262029835 -20163829 - MER69 DNA AcHobo -1643 883 556 1991 222 120 2 chr1 262030271 262030780 -20162884 - MER69 DNA AcHobo -1956 570 2 830 269 149 16 chr1 262031451 262032004 -20161660 - L2 LINE L2 -198 3115 2485 209 313 119 22 chr1 262032591 262032818 -20160846 + L2 LINE L2 2547 2795 -519 656 131 0 0 chr1 262033838 262033937 -20159727 - AluSg SINE Alu -9 301 203 1182 90 0 0 chr1 262033938 262034083 -20159581 - AluSg SINE Alu -165 145 1 447 239 15 54 chr1 262034333 262034463 -20159201 - MIR SINE MIR -106 156 32 792 284 50 0 chr1 262034476 262034694 -20158970 + MIR SINE MIR 18 246 -16 2380 90 0 3 chr1 262034872 262035172 -20158492 - AluSx SINE Alu -13 299 1 1139 154 64 17 chr1 262035308 262035542 -20158122 + MER96B DNA MER1_type? 173 417 0 1327 191 16 0 chr1 262035542 262035788 -20157876 - MLT1F LTR MaLR -292 250 1 375 132 59 0 chr1 262035864 262035932 -20157732 + L1MA9 LINE L1 5994 6065 -247 660 99 0 0 chr1 262035934 262036035 -20157629 + L1MA8 LINE L1 6179 6279 -12 2290 112 0 0 chr1 262036035 262036331 -20157333 - AluSg SINE Alu -14 296 1 1945 117 46 14 chr1 262036702 262036984 -20156680 + AluSx SINE Alu 1 291 -21 1003 190 151 36 chr1 262037010 262037342 -20156322 - MSTD LTR MaLR -26 370 1 375 309 36 7 chr1 262037478 262037617 -20156047 + MER5A DNA MER1_type 1 143 -46 2227 96 0 7 chr1 262037965 262038266 -20155398 + AluSx SINE Alu 1 299 -13 921 187 21 16 chr1 262038665 262038852 -20154812 + MER5A DNA MER1_type 1 188 -1 183 80 0 0 chr1 262038860 262038885 -20154779 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 74 0 0 chr1 262038885 262038912 -20154752 + (T)n Simple_repeat Simple_repeat 1 27 0 1496 203 59 0 chr1 262039377 262039648 -20154016 - AluJo SINE Alu -25 287 1 236 222 56 0 chr1 262039669 262039723 -20153941 - MER81 DNA DNA -4 110 54 2408 72 0 0 chr1 262039725 262040015 -20153649 - AluY SINE Alu -21 290 1 2074 145 7 7 chr1 262040020 262040324 -20153340 - AluJb SINE Alu 0 312 9 252 86 0 0 chr1 262040522 262040557 -20153107 + (CCG)n Simple_repeat Simple_repeat 3 37 0 2201 129 62 3 chr1 262041796 262042152 -20151512 - MER51B LTR ERV1 0 377 1 2113 81 0 11 chr1 262043240 262043523 -20150141 + AluSx SINE Alu 11 290 -22 308 132 38 38 chr1 262244539 262244645 -19949019 + (TCTCTG)n Simple_repeat Simple_repeat 4 109 0 363 73 0 0 chr1 262244652 262244707 -19948957 + (TG)n Simple_repeat Simple_repeat 2 56 0 2085 225 153 14 chr1 262249017 262249826 -19943838 + L1M4 LINE L1 3491 4412 -1734 1422 109 43 0 chr1 262249950 262250180 -19943484 + L1P5 LINE L1 5323 5562 -594 1876 231 5 27 chr1 262250180 262250618 -19943046 + L1PA11 LINE L1 7 434 -7147 1138 248 25 25 chr1 262250649 262250971 -19942693 - L1PA12 LINE L1 -6758 823 502 17376 142 18 6 chr1 262251263 262252967 -19940697 + L1PA11 LINE L1 3840 5522 -2090 2151 127 0 7 chr1 262252967 262253266 -19940398 - AluSx SINE Alu -15 297 1 17376 142 18 6 chr1 262253266 262254208 -19939456 + L1PA11 LINE L1 5522 6451 -1161 2127 121 6 25 chr1 262254208 262254523 -19939141 + AluSc SINE Alu 1 309 0 17376 142 18 6 chr1 262254523 262255637 -19938027 + L1PA11 LINE L1 6451 7611 -1 1110 163 9 39 chr1 262255639 262255821 -19937843 + L1PB4 LINE L1 5551 5726 -430 2225 171 51 15 chr1 262255821 262256230 -19937434 - MSTB LTR MaLR -2 424 1 1110 163 9 39 chr1 262256230 262256280 -19937384 + L1PB4 LINE L1 5726 5776 -380 332 171 8 3 chr1 262256280 262256361 -19937303 + L1M4 LINE L1 5724 5806 -365 2406 112 37 13 chr1 262256371 262256754 -19936910 + L1PB4 LINE L1 5764 6155 -1 450 204 32 24 chr1 262256796 262256925 -19936739 + L1M4c LINE L1 611 931 -5715 451 228 86 3 chr1 262259876 262260040 -19933624 + MLT1F LTR MaLR 124 303 -239 199 111 56 0 chr1 262260707 262260743 -19932921 - MIR SINE MIR -70 138 101 249 159 23 23 chr1 262262160 262262248 -19931416 + (TCTCTG)n Simple_repeat Simple_repeat 2 89 0 783 191 31 36 chr1 262262392 262262617 -19931047 + L1 LINE L1 4038 4261 -1885 1199 213 38 90 chr1 262262761 262263241 -19930423 + L1MC5 LINE L1 6674 7128 -833 3210 236 53 69 chr1 262263265 262264472 -19929192 + L1MCb LINE L1 1 1188 -4857 1378 146 46 0 chr1 262264461 262264701 -19928963 + L1PB4 LINE L1 5718 5968 -188 * 2404 82 3 29 chr1 262264925 262265240 -19928424 + AluSp SINE Alu 1 307 -6 1658 130 109 32 chr1 262265244 262265529 -19928135 + AluSg1 SINE Alu 3 309 0 188 139 0 23 chr1 262265673 262265716 -19927948 + (TTAGGG)n Simple_repeat Simple_repeat 5 46 0 384 210 9 48 chr1 262267039 262267382 -19926282 + CT-rich Low_complexity Low_complexity 1 329 0 3198 204 47 1 chr1 262267406 262268092 -19925572 - LTR62 LTR ERVK -2 717 1 1934 170 3 3 chr1 262268483 262268789 -19924875 + AluJo SINE Alu 1 306 -6 2220 189 81 10 chr1 262268789 262269298 -19924366 + MER49 LTR ERV1 247 791 -132 241 165 10 62 chr1 262269742 262269839 -19923825 + GA-rich Low_complexity Low_complexity 1 92 0 406 113 0 0 chr1 262269988 262270041 -19923623 - AluJ/FLAM SINE Alu -223 89 37 866 176 0 47 chr1 262270063 262270233 -19923431 + AluJb SINE Alu 148 309 -3 1095 212 24 0 chr1 262270236 262270486 -19923178 + L1MB5 LINE L1 5721 5976 -198 2627 123 36 44 chr1 262270486 262270677 -19922987 + LTR45B LTR ERV1 1 192 -297 2184 96 3 75 chr1 262270677 262271011 -19922653 + AluSg SINE Alu 1 310 0 2627 123 36 44 chr1 262271011 262271297 -19922367 + LTR45B LTR ERV1 192 474 -15 803 205 23 0 chr1 262271303 262271474 -19922190 + L1MB5 LINE L1 5970 6144 -30 1763 156 3 42 chr1 262272048 262272355 -19921309 + AluJo SINE Alu 10 304 -8 264 340 88 12 chr1 262274549 262274799 -19918865 + HAL1 LINE L1 1393 1661 -846 543 244 98 6 chr1 262274856 262275020 -19918644 + L1M4 LINE L1 2762 2940 -3206 5348 253 35 85 chr1 262275094 262277210 -19916454 + L1MCb LINE L1 2039 4258 -2306 2067 152 3 7 chr1 262277210 262277520 -19916144 + AluJo SINE Alu 2 310 -2 5348 253 35 85 chr1 262277520 262277941 -19915723 + L1MCb LINE L1 4258 4354 -2210 1672 191 25 7 chr1 262277941 262278223 -19915441 + AluSx SINE Alu 5 291 -21 5348 253 35 85 chr1 262278223 262278861 -19914803 + L1MCb LINE L1 4354 5022 -1542 300 383 26 16 chr1 262279021 262279214 -19914450 + HERV16 LTR ERVL 1383 1577 -3419 326 356 32 11 chr1 262279339 262279527 -19914137 + HERV16 LTR ERVL 1799 1990 -3664 318 312 16 16 chr1 262279608 262279733 -19913931 + HERV16 LTR ERVL 3096 3220 -2265 282 353 90 20 chr1 262279765 262279966 -19913698 + HERV16 LTR ERVL 3328 3542 -2222 781 302 83 49 chr1 262280084 262280863 -19912801 + HERV16 LTR ERVL 3717 4522 -1132 490 154 13 0 chr1 262280875 262280953 -19912711 - LTR47A LTR ERVL 0 452 374 229 98 20 20 chr1 262280981 262281032 -19912632 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 2022 132 82 11 chr1 262281052 262281416 -19912248 - LTR47A LTR ERVL -62 390 1 526 370 33 33 chr1 262281422 262281755 -19911909 + HERV16 LTR ERVL 4527 4862 -623 1613 205 42 35 chr1 262281755 262282017 -19911647 + MSTB1 LTR MaLR 1 269 -163 8436 60 0 0 chr1 262282017 262282986 -19910678 - LTR5 LTR ERVK 0 969 1 1613 205 42 35 chr1 262282986 262283152 -19910512 + MSTB1 LTR MaLR 269 432 0 526 370 33 33 chr1 262283152 262283239 -19910425 + HERV16 LTR ERVL 4861 4947 -538 471 230 134 64 chr1 262283633 262284007 -19909657 + LTR16A1 LTR ERVL 1 400 -57 284 265 10 10 chr1 262284100 262284198 -19909466 + L1ME3A LINE L1 4829 4926 -1638 760 233 135 41 chr1 262284209 262284475 -19909189 + MLT1A1 LTR MaLR 21 311 -54 1420 0 0 0 chr1 262284485 262284648 -19909016 - L1HS LINE L1 0 6155 5993 420 141 14 0 chr1 262284648 262284719 -19908945 + MLT1A1 LTR MaLR 325 396 0 378 289 59 0 chr1 262284719 262284854 -19908810 + L1ME3A LINE L1 4935 5077 -1487 429 281 177 28 chr1 262285004 262285331 -19908333 + L1ME3A LINE L1 5095 5470 -1094 932 213 5 15 chr1 262285365 262285562 -19908102 + AluJo SINE Alu 113 307 -5 25972 106 74 67 chr1 262285576 262290885 -19902779 + L1PA7 LINE L1 12 5375 -779 2850 13 0 3 chr1 262290885 262291194 -19902470 + AluY SINE Alu 1 308 -3 25972 106 74 67 chr1 262291194 262291848 -19901816 + L1PA7 LINE L1 5375 6023 -131 316 260 29 17 chr1 262292145 262292318 -19901346 - AluY SINE Alu -85 216 42 1623 243 56 93 chr1 262292327 262292749 -19900915 + L1ME3A LINE L1 5767 6144 -444 1637 177 85 3 chr1 262292749 262293032 -19900632 + AluJo SINE Alu 1 306 -6 1623 243 56 93 chr1 262293032 262293462 -19900202 + L1ME3A LINE L1 6144 6588 0 269 306 9 9 chr1 262293646 262293757 -19899907 + L1MEd LINE L1 1288 1398 -4974 313 322 144 17 chr1 262293803 262293977 -19899687 + L1MEd LINE L1 1311 1506 -4878 198 0 0 0 chr1 262294446 262294468 -19899196 + (T)n Simple_repeat Simple_repeat 1 22 0 276 265 0 0 chr1 262294791 262294927 -19898737 + (TTCA)n Simple_repeat Simple_repeat 3 138 0 * 347 288 86 107 chr1 262294824 262294945 -19898719 - L1MEc LINE L1 -2659 3556 3434 536 214 0 6 chr1 262294945 262295104 -19898560 + (TTCA)n Simple_repeat Simple_repeat 3 160 0 347 288 86 107 chr1 262295104 262295209 -19898455 - L1MEc LINE L1 -2781 3434 3180 * 363 246 0 0 chr1 262295115 262295241 -19898423 + (TTCA)n Simple_repeat Simple_repeat 2 127 0 184 262 0 0 chr1 262295690 262295732 -19897932 - MIR SINE MIR -63 145 104 851 141 0 21 chr1 262297207 262297349 -19896315 - AluJo SINE Alu -173 139 1 1224 203 71 16 chr1 262297356 262297735 -19895929 + MER31A LTR ERV1 83 482 -3 373 165 0 18 chr1 262300383 262300492 -19893172 + GA-rich Low_complexity Low_complexity 1 107 0 191 139 28 0 chr1 262301909 262301952 -19891712 + MIR SINE MIR 101 144 -118 302 420 74 24 chr1 262302276 262302612 -19891052 - L1MEc LINE L1 -4166 2230 1878 2077 131 0 10 chr1 262302797 262303109 -19890555 - AluSx SINE Alu -3 309 1 1112 99 0 0 chr1 262303110 262303252 -19890412 - AluSq/x SINE Alu -170 142 1 862 181 19 7 chr1 262303252 262303407 -19890257 - FRAM SINE Alu -19 157 1 339 213 43 0 chr1 262303630 262303724 -19889940 - L1MEc LINE L1 -5057 1148 1051 792 257 93 37 chr1 262304023 262304451 -19889213 + MLT1C LTR MaLR 6 457 -10 200 194 9 46 chr1 262306557 262306665 -19886999 + C-rich Low_complexity Low_complexity 4 107 0 223 120 20 20 chr1 262306759 262306809 -19886855 + C-rich Low_complexity Low_complexity 2 51 0 264 279 51 0 chr1 262307304 262307383 -19886281 + MLT1A1 LTR MaLR 42 124 -471 377 333 176 43 chr1 262307421 262307841 -19885823 + L1M4 LINE L1 65 540 -6002 5046 164 7 23 chr1 262307845 262308031 -19885633 + L1PB3 LINE L1 4475 4662 -1492 1847 113 9 94 chr1 262308031 262308360 -19885304 + AluSx SINE Alu 1 301 -11 5046 164 7 23 chr1 262308360 262309510 -19884154 + L1PB3 LINE L1 4662 5776 -378 1987 139 0 0 chr1 262309510 262309813 -19883851 + AluSx SINE Alu 1 303 -9 5046 164 7 23 chr1 262309813 262310185 -19883479 + L1PB3 LINE L1 5776 6152 -2 21 0 0 0 chr1 262310185 262310206 -19883458 + AT_rich Low_complexity Low_complexity 1 21 0 1014 231 29 50 chr1 262310214 262310590 -19883074 + L1 LINE L1 4012 4379 -1767 1422 178 0 0 chr1 262310594 262310825 -19882839 + AluJo SINE Alu 1 231 -81 186 0 28 56 chr1 262310830 262310866 -19882798 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1035 176 29 0 chr1 262310866 262311076 -19882588 + MLT1A1 LTR MaLR 148 363 -2 432 229 21 0 chr1 262311509 262311605 -19882059 + AluSg/x SINE Alu 205 302 -10 253 309 36 0 chr1 262311625 262311709 -19881955 - L1M4 LINE L1 -2031 4115 4029 1672 146 80 4 chr1 262311784 262312059 -19881605 + AluSx SINE Alu 1 296 -16 1263 207 121 0 chr1 262314809 262315114 -19878550 - MSTB LTR MaLR 0 426 85 1897 246 16 16 chr1 262315230 262315664 -19878000 - Tigger2a DNA MER2_type 0 434 1 301 230 113 23 chr1 262315888 262316075 -19877589 + MLT1E LTR MaLR 247 481 -112 297 157 24 24 chr1 262316295 262316378 -19877286 + CT-rich Low_complexity Low_complexity 4 86 0 279 172 23 11 chr1 262317571 262317658 -19876006 + CT-rich Low_complexity Low_complexity 2 89 0 220 378 6 17 chr1 262318236 262318408 -19875256 + (CA)n Simple_repeat Simple_repeat 1 170 0 * 239 296 50 31 chr1 262318309 262318468 -19875196 + (CATG)n Simple_repeat Simple_repeat 1 162 0 * 409 337 6 6 chr1 262318432 262318601 -19875063 + (CA)n Simple_repeat Simple_repeat 1 169 0 277 348 11 22 chr1 262318642 262318823 -19874841 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 433 314 23 0 chr1 262318742 262318914 -19874750 + (CA)n Simple_repeat Simple_repeat 2 177 0 210 273 0 40 chr1 262319978 262320077 -19873587 + CT-rich Low_complexity Low_complexity 2 96 0 284 255 0 87 chr1 262320114 262320298 -19873366 + CT-rich Low_complexity Low_complexity 3 170 0 408 283 11 42 chr1 262321032 262321270 -19872394 + GA-rich Low_complexity Low_complexity 1 230 0 405 0 0 0 chr1 262322288 262322333 -19871331 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 191 45 0 chr1 262322388 262322477 -19871187 + (CA)n Simple_repeat Simple_repeat 1 93 0 32 43 0 0 chr1 262323044 262323090 -19870574 + AT_rich Low_complexity Low_complexity 1 46 0 215 303 26 0 chr1 262323390 262323466 -19870198 - MIR3 SINE MIR -19 189 112 180 352 33 11 chr1 262323392 262323483 -19870181 - L2 LINE L2 -1681 1633 1541 * 333 0 0 0 chr1 262324994 262325031 -19868633 + (CA)n Simple_repeat Simple_repeat 2 38 0 188 191 45 0 chr1 262325086 262325175 -19868489 + (CA)n Simple_repeat Simple_repeat 1 93 0 25 51 0 0 chr1 262325749 262325788 -19867876 + AT_rich Low_complexity Low_complexity 1 39 0 215 303 26 0 chr1 262326088 262326164 -19867500 - MIR3 SINE MIR -19 189 112 180 352 33 11 chr1 262326090 262326181 -19867483 - L2 LINE L2 -1681 1633 1541 * 261 288 0 0 chr1 262330825 262330884 -19862780 + FRAM/FAM SINE Alu 6 64 -102 195 221 0 42 chr1 262333977 262334072 -19859592 + G-rich Low_complexity Low_complexity 1 91 0 573 202 0 0 chr1 262335241 262335340 -19858324 + FLAM_A SINE Alu 28 126 -16 1589 163 67 23 chr1 262335486 262335617 -19858047 + MLT1A1 LTR MaLR 6 130 -235 1502 161 0 0 chr1 262335617 262335853 -19857811 + AluJb SINE Alu 1 236 -76 186 0 28 56 chr1 262335853 262335889 -19857775 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 1589 163 67 23 chr1 262335889 262336099 -19857565 + MLT1A1 LTR MaLR 129 363 -2 429 262 19 0 chr1 262336518 262336625 -19857039 + AluY SINE Alu 193 301 -10 343 323 124 37 chr1 262336645 262336804 -19856860 - L1MEc LINE L1 -2031 4184 4000 1928 105 80 4 chr1 262336804 262337080 -19856584 + AluSx SINE Alu 1 297 -15 343 323 124 37 chr1 262337080 262337137 -19856527 - L1MEc LINE L1 -2215 4000 3949 207 0 0 0 chr1 262337141 262337164 -19856500 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 411 216 0 0 chr1 262337164 262337238 -19856426 - AluJ/FRAM SINE Alu -23 289 216 345 317 28 42 chr1 262337438 262337580 -19856084 - L1MEc LINE L1 -2532 3683 3544 1592 183 27 6 chr1 262337615 262337949 -19855715 - Tigger1 DNA MER2_type 0 2418 2078 1022 84 0 0 chr1 262337958 262338089 -19855575 - AluSg SINE Alu -179 131 1 10120 118 30 3 chr1 262338089 262339754 -19853910 - Tigger1 DNA MER2_type -330 2088 379 1686 227 41 0 chr1 262339952 262340366 -19853298 - L1MB7 LINE L1 -212 5972 5542 517 360 187 0 chr1 262340375 262340781 -19852883 - L1MEc LINE L1 -2665 3550 3069 332 411 73 24 chr1 262341723 262342064 -19851600 - L1MEc LINE L1 -4161 2235 1878 2118 125 0 10 chr1 262342248 262342561 -19851103 - AluSx SINE Alu -2 310 1 1094 106 0 0 chr1 262342562 262342704 -19850960 - AluSq/x SINE Alu -171 142 1 893 172 19 6 chr1 262342704 262342861 -19850803 - AluJb SINE Alu -17 295 137 356 202 43 0 chr1 262343084 262343178 -19850486 - L1MEc LINE L1 -5057 1148 1051 792 257 93 37 chr1 262343477 262343905 -19849759 + MLT1C LTR MaLR 6 457 -10 213 221 0 0 chr1 262344266 262344334 -19849330 + (CA)n Simple_repeat Simple_repeat 2 69 0 519 269 0 0 chr1 262344359 262344663 -19849001 + (CA)n Simple_repeat Simple_repeat 1 304 0 227 263 21 0 chr1 262344670 262344765 -19848899 + (CATA)n Simple_repeat Simple_repeat 4 100 0 2903 250 59 13 chr1 262349433 262349765 -19843899 + L1MB7 LINE L1 5259 5574 -610 1707 171 7 23 chr1 262349765 262350070 -19843594 + AluJb SINE Alu 1 300 -12 2903 250 59 13 chr1 262350070 262350606 -19843058 + L1MB7 LINE L1 5574 6167 -17 209 289 0 0 chr1 262353137 262353182 -19840482 + polypurine Low_complexity Low_complexity 2 46 0 22 0 0 0 chr1 262353294 262353316 -19840348 + GC_rich Low_complexity Low_complexity 1 22 0 33 90 0 0 chr1 262353743 262353832 -19839832 + GC_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr1 262354005 262354027 -19839637 + GC_rich Low_complexity Low_complexity 1 22 0 41 89 0 19 chr1 262354055 262354213 -19839451 + GC_rich Low_complexity Low_complexity 1 155 0 635 174 15 15 chr1 262357055 262357187 -19836477 + FLAM_C SINE Alu 1 132 -1 2256 123 0 9 chr1 262357201 262357517 -19836147 + AluSq SINE Alu 1 313 0 1983 147 17 0 chr1 262357537 262357663 -19836001 + AluJo SINE Alu 1 123 -189 216 0 0 0 chr1 262357663 262357687 -19835977 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1983 147 17 0 chr1 262357687 262357852 -19835812 + AluJo SINE Alu 123 297 -15 1838 224 28 2 chr1 262357857 262358285 -19835379 + ERVL LTR ERVL 1771 2209 -3555 273 226 0 0 chr1 262359073 262359157 -19834507 + (CAGAGA)n Simple_repeat Simple_repeat 1 84 0 191 244 0 11 chr1 262359194 262359284 -19834380 + GA-rich Low_complexity Low_complexity 2 90 0 396 0 0 0 chr1 262359941 262359985 -19833679 + (TG)n Simple_repeat Simple_repeat 1 44 0 427 29 29 29 chr1 262359985 262360054 -19833610 + (CAGAGA)n Simple_repeat Simple_repeat 2 70 0 3521 192 127 21 chr1 262360278 262361177 -19832487 - L1MD2 LINE L1 -48 6311 5318 47 0 0 0 chr1 262361178 262361225 -19832439 + AT_rich Low_complexity Low_complexity 1 47 0 6271 227 65 47 chr1 262361262 262361640 -19832024 - L1MD2 LINE L1 -818 5328 4958 183 42 0 0 chr1 262361640 262361664 -19832000 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6271 227 65 47 chr1 262361664 262363016 -19830648 - L1MD2 LINE L1 -1188 4958 3631 727 171 0 64 chr1 262363016 262363156 -19830508 - FLAM_C SINE Alu 0 133 3 6271 227 65 47 chr1 262363156 262363515 -19830149 - L1MD2 LINE L1 -2515 3631 3280 2211 114 3 19 chr1 262363515 262363832 -19829832 - AluSp SINE Alu -1 312 1 6271 227 65 47 chr1 262363832 262364120 -19829544 - L1MD2 LINE L1 -2866 3280 2925 1174 245 61 6 chr1 262364114 262364457 -19829207 + L1M4 LINE L1 2445 2806 -3340 * 842 8 58 0 chr1 262365226 262365346 -19828318 + (TTTTA)n Simple_repeat Simple_repeat 1 127 0 660 212 106 0 chr1 262365346 262365478 -19828186 - FRAM SINE Alu -30 146 1 332 315 102 47 chr1 262365482 262365753 -19827911 + MLT2F LTR ERVL 260 559 -104 2367 93 7 3 chr1 262365753 262366053 -19827611 + AluSq SINE Alu 1 301 -12 332 315 102 47 chr1 262366053 262366162 -19827502 + MLT2F LTR ERVL 559 661 -2 923 159 0 18 chr1 262366205 262366368 -19827296 + FRAM SINE Alu 11 170 -6 282 332 74 0 chr1 262366871 262367061 -19826603 + L1ME LINE L1 5547 5750 -371 268 293 58 80 chr1 262367130 262367318 -19826346 + HAL1 LINE L1 5 188 -2319 621 230 36 12 chr1 262367455 262367620 -19826044 + L1MEc LINE L1 34 202 -6194 1938 172 5 59 chr1 262367671 262368077 -19825587 + MLT1B LTR MaLR 1 384 -6 979 239 50 0 chr1 262368077 262368661 -19825003 + L1MEc LINE L1 332 987 -5409 1834 155 14 4 chr1 262368671 262368948 -19824716 + AluSx SINE Alu 3 282 -30 228 208 21 0 chr1 262369032 262369080 -19824584 + L1M4 LINE L1 370 418 -6124 363 261 0 75 chr1 262369094 262369228 -19824436 + L1MC4 LINE L1 6581 6704 -1338 521 135 0 0 chr1 262369287 262369383 -19824281 - L1MA5 LINE L1 -5 6295 6200 224 119 0 24 chr1 262369422 262369464 -19824200 + (TA)n Simple_repeat Simple_repeat 1 41 0 37 69 0 0 chr1 262370836 262370908 -19822756 + AT_rich Low_complexity Low_complexity 1 72 0 2465 78 0 0 chr1 262370980 262371276 -19822388 + AluY SINE Alu 1 296 -15 604 37 101 0 chr1 262371428 262371650 -19822014 + (TA)n Simple_repeat Simple_repeat 1 244 0 1234 148 0 11 chr1 262371667 262371856 -19821808 + AluJb SINE Alu 110 296 -16 451 221 7 71 chr1 262372095 262372235 -19821429 + AluJo SINE Alu 12 142 -170 260 241 0 69 chr1 262372235 262372322 -19821342 - L1ME LINE L1 -558 5563 5483 1558 194 41 10 chr1 262372447 262372740 -19820924 - AluJb SINE Alu -10 302 1 393 189 0 135 chr1 262372743 262372891 -19820773 + LTR41 LTR ERVL 640 767 -6 2486 129 64 19 chr1 262373170 262373590 -19820074 + MER1A DNA MER1_type 1 439 -90 2244 115 0 0 chr1 262379813 262380117 -19813547 + AluSg SINE Alu 1 304 -6 214 180 11 79 chr1 262380354 262380443 -19813221 + (CAGGG)n Simple_repeat Simple_repeat 3 85 0 437 155 0 0 chr1 262383203 262383287 -19810377 - AluSq SINE Alu 0 313 230 915 154 20 7 chr1 262383289 262383438 -19810226 - AluSq SINE Alu -161 151 1 918 244 38 16 chr1 262383441 262383889 -19809775 - L1M2 LINE L1 -4226 2623 2069 2220 105 3 23 chr1 262383889 262384195 -19809469 - AluSg SINE Alu -10 300 1 918 244 38 16 chr1 262384195 262384301 -19809363 - L1M2 LINE L1 -4780 2069 1967 660 158 0 0 chr1 262384302 262384403 -19809261 - FLAM_C SINE Alu -40 103 3 731 126 0 0 chr1 262384405 262384516 -19809148 + FLAM_C SINE Alu 27 137 -6 1925 106 3 65 chr1 262384518 262384811 -19808853 + AluSx SINE Alu 37 311 -1 264 296 30 69 chr1 262385206 262385298 -19808366 + L2 LINE L2 3118 3212 -101 2303 115 0 0 chr1 262385298 262385602 -19808062 + AluSq SINE Alu 1 304 -9 264 296 30 69 chr1 262385602 262385712 -19807952 + L2 LINE L2 3212 3312 -1 2058 122 0 0 chr1 262386149 262386419 -19807245 + AluSx SINE Alu 1 270 -42 333 246 109 36 chr1 262386543 262386653 -19807011 + L2 LINE L2 3195 3312 -1 21 36 0 0 chr1 262387040 262387068 -19806596 + AT_rich Low_complexity Low_complexity 1 28 0 1478 228 41 36 chr1 262387195 262387960 -19805704 - L1MCa LINE L1 -4071 2357 1462 895 134 20 25 chr1 262387960 262388161 -19805503 - L1MA5 LINE L1 0 6300 6101 1478 228 41 36 chr1 262388161 262388342 -19805322 - L1MCa LINE L1 -4966 1462 1283 1939 166 14 0 chr1 262389328 262389624 -19804040 - AluJb SINE Alu -12 300 1 393 397 29 21 chr1 262389787 262390346 -19803318 - L2 LINE L2 -2 3270 2707 * 497 263 0 8 chr1 262390344 262390462 -19803202 - L2 LINE L2 0 3313 3197 209 139 23 0 chr1 262390741 262390784 -19802880 + (TA)n Simple_repeat Simple_repeat 1 44 0 5838 221 74 28 chr1 262390898 262391265 -19802399 + L1M3 LINE L1 492 841 -5803 1874 177 7 3 chr1 262391265 262391570 -19802094 + AluJo SINE Alu 4 309 -3 5838 221 74 28 chr1 262391570 262394577 -19799087 + L1M3 LINE L1 841 3708 -2936 1806 174 0 36 chr1 262394577 262394881 -19798783 + AluJb SINE Alu 3 295 -17 5838 221 74 28 chr1 262394881 262395484 -19798180 + L1M3 LINE L1 3708 4282 -2362 2205 114 0 3 chr1 262395484 262395792 -19797872 + AluSq SINE Alu 1 307 -6 5838 221 74 28 chr1 262395792 262396001 -19797663 + L1M3 LINE L1 4282 4480 -2164 1966 140 0 28 chr1 262396001 262396322 -19797342 + AluSx SINE Alu 1 312 0 5838 221 74 28 chr1 262396322 262396341 -19797323 + L1M3 LINE L1 4480 4896 -1748 2687 171 16 26 chr1 262396332 262397203 -19796461 + L1M3 LINE L1 5245 6112 -569 * 2360 78 0 0 chr1 262397205 262397514 -19796150 + AluY SINE Alu 1 309 -2 994 181 0 0 chr1 262397514 262397700 -19795964 + AluSp SINE Alu 134 319 0 912 179 12 16 chr1 262397700 262397912 -19795752 + L1M3 LINE L1 6102 6271 -398 335 276 0 51 chr1 262397947 262397972 -19795692 + L1MC4 LINE L1 6612 6637 -1405 2183 98 0 29 chr1 262397972 262398279 -19795385 + AluSx SINE Alu 1 298 -14 335 276 0 51 chr1 262398279 262398351 -19795313 + L1MC4 LINE L1 6637 6704 -1338 577 144 9 27 chr1 262398377 262398488 -19795176 + Tigger2a DNA MER2_type 1 109 -325 701 140 182 0 chr1 262398491 262398634 -19795030 + Tigger2a DNA MER2_type 242 410 -34 851 181 51 1 chr1 262398698 262398898 -19794766 + L1ME LINE L1 5191 5398 -766 403 298 69 27 chr1 262398878 262398942 -19794722 + L1MC4 LINE L1 7606 7666 -376 * 2493 52 3 0 chr1 262398942 262399249 -19794415 - AluY SINE Alu -3 308 1 403 298 69 27 chr1 262399249 262399372 -19794292 + L1MC4 LINE L1 7666 7801 -241 283 258 31 31 chr1 262399555 262399652 -19794012 + L1ME LINE L1 5561 5657 -464 200 298 66 41 chr1 262400046 262400167 -19793497 + MIR SINE MIR 30 153 -55 2913 129 21 2 chr1 262400440 262400858 -19792806 - MSTC LTR MaLR -2 426 1 431 209 18 36 chr1 262401052 262401162 -19792502 - MER3 DNA MER1_type -1 208 101 3467 230 67 11 chr1 262401200 262402110 -19791554 + L1MEc LINE L1 311 1271 -5125 3650 248 49 8 chr1 262402218 262403331 -19790333 + L1M4 LINE L1 3236 4394 -1752 1698 168 34 3 chr1 262404671 262404963 -19788701 - AluJo SINE Alu -11 301 1 905 179 6 0 chr1 262406361 262406523 -19787141 + FRAM SINE Alu 1 163 -13 383 243 14 0 chr1 262407370 262407440 -19786224 + MER119 DNA MER1_type 1 71 -512 795 109 0 9 chr1 262407440 262407550 -19786114 + AluJb SINE Alu 17 125 -187 2080 227 14 18 chr1 262407570 262408006 -19785658 - Tigger2a DNA MER2_type 0 434 1 503 179 137 24 chr1 262408084 262408252 -19785412 + MER119 DNA MER1_type 352 538 -45 840 213 0 18 chr1 262408257 262408269 -19785395 - FRAM SINE Alu -156 156 145 198 91 0 0 chr1 262408269 262408302 -19785362 + (TTTAA)n Simple_repeat Simple_repeat 2 34 0 840 213 0 18 chr1 262408302 262408453 -19785211 - FRAM SINE Alu -167 145 1 240 341 12 0 chr1 262410952 262411037 -19782627 + MIR3 SINE MIR 79 164 -44 23 0 0 0 chr1 262411612 262411635 -19782029 + GC_rich Low_complexity Low_complexity 1 23 0 346 176 28 49 chr1 262411763 262411905 -19781759 + (CCCCG)n Simple_repeat Simple_repeat 5 143 0 21 0 0 0 chr1 262411975 262411996 -19781668 + GC_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr1 262412646 262412702 -19780962 + GC_rich Low_complexity Low_complexity 1 56 0 235 203 40 27 chr1 262416353 262416427 -19777237 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 395 166 23 40 chr1 262416440 262416615 -19777049 + (TCTCTG)n Simple_repeat Simple_repeat 1 172 0 222 331 24 53 chr1 262417200 262417369 -19776295 + MER5C DNA MER1_type 5 168 -156 299 287 103 23 chr1 262417579 262417753 -19775911 + L3 LINE CR1 1250 1437 -140 1169 113 11 6 chr1 262417813 262417990 -19775674 - AluJb SINE Alu -31 281 104 704 206 0 7 chr1 262418044 262418180 -19775484 - AluJo SINE Alu -92 220 86 253 305 76 8 chr1 262419154 262419272 -19774392 - MIR3 SINE MIR -53 155 30 225 0 0 0 chr1 262419929 262419954 -19773710 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2039 181 94 10 chr1 262421553 262421946 -19771718 - MSTB LTR MaLR 0 426 1 1567 158 62 21 chr1 262422347 262422638 -19771026 + AluJo SINE Alu 1 303 -9 240 320 80 8 chr1 262422882 262423007 -19770657 - L1MD3 LINE L1 -135 7860 7727 1783 144 39 0 chr1 262423324 262423608 -19770056 - AluJo SINE Alu -17 295 1 2120 105 10 0 chr1 262424862 262425158 -19768506 + AluSx SINE Alu 3 301 -11 341 286 59 0 chr1 262425937 262426056 -19767608 - L1ME2 LINE L1 0 6164 6039 391 241 128 21 chr1 262426073 262426214 -19767450 + MER3 DNA MER1_type 15 123 -86 429 325 25 0 chr1 262426479 262426642 -19767022 - L1ME2 LINE L1 -389 5775 5609 1421 158 151 15 chr1 262427093 262427352 -19766312 + AluJo SINE Alu 2 295 -7 309 368 38 50 chr1 262428213 262428531 -19765133 + HAL1 LINE L1 880 1193 -1314 4596 209 58 64 chr1 262428569 262429113 -19764551 - L1MB5 LINE L1 0 6174 5628 230 298 18 0 chr1 262429113 262429170 -19764494 + AluJb SINE Alu 196 253 -49 4596 209 58 64 chr1 262429170 262430254 -19763410 - L1MB5 LINE L1 -546 5628 4538 1972 148 0 3 chr1 262430254 262430565 -19763099 - AluJb SINE Alu -2 310 1 4596 209 58 64 chr1 262430565 262430680 -19762984 - L1MB5 LINE L1 -1636 4538 4424 1537 133 78 37 chr1 262430680 262430974 -19762690 - AluJo SINE Alu -6 306 1 4596 209 58 64 chr1 262430974 262431376 -19762288 - L1MB5 LINE L1 -1750 4424 3991 5397 163 7 22 chr1 262431384 262431755 -19761909 - L1PB3 LINE L1 -2 6152 5777 1988 132 0 0 chr1 262431755 262432058 -19761606 - AluSx SINE Alu -9 303 1 5397 163 7 22 chr1 262432058 262433208 -19760456 - L1PB3 LINE L1 -377 5777 4662 1848 111 9 93 chr1 262433208 262433540 -19760124 - AluSx SINE Alu -8 304 1 5397 163 7 22 chr1 262433540 262433726 -19759938 - L1PB3 LINE L1 -1492 4662 4475 302 333 176 43 chr1 262433730 262434150 -19759514 - L1M4 LINE L1 -6002 540 65 313 266 51 0 chr1 262434188 262434267 -19759397 - MLT1G1 LTR MaLR -471 124 42 297 289 74 30 chr1 262434482 262434617 -19759047 + L2 LINE L2 2343 2483 -831 661 177 14 43 chr1 262434632 262434773 -19758891 + MLT1A1 LTR MaLR 2 138 -227 1221 163 84 24 chr1 262434776 262435027 -19758637 + AluJo SINE Alu 43 308 -4 2137 109 0 3 chr1 262435029 262435365 -19758299 + AluSx SINE Alu 1 335 0 439 196 20 2 chr1 262435423 262435567 -19758097 + MLT1A1 LTR MaLR 188 365 0 295 200 38 48 chr1 262435579 262435684 -19757980 + L2 LINE L2 2874 2977 -337 192 320 10 70 chr1 262436205 262436305 -19757359 + MIR SINE MIR 84 177 -85 265 240 32 20 chr1 262436402 262436659 -19757005 + (TG)n Simple_repeat Simple_repeat 1 260 0 5324 192 63 13 chr1 262437432 262438896 -19754768 - L1MB7 LINE L1 -345 5839 4450 1950 149 0 0 chr1 262438896 262439184 -19754480 + AluSx SINE Alu 1 288 -24 252 86 0 0 chr1 262439184 262439219 -19754445 + (CA)n Simple_repeat Simple_repeat 2 36 0 5324 192 63 13 chr1 262439219 262439482 -19754182 - L1MB7 LINE L1 -1733 4451 4017 877 219 82 22 chr1 262439510 262439779 -19753885 - Charlie2 DNA MER1_type -731 2131 1847 229 275 58 0 chr1 262440018 262440087 -19753577 - L2 LINE L2 -196 3076 3004 255 350 12 3 chr1 262440118 262440281 -19753383 - MIR SINE MIR -30 232 28 208 210 25 62 chr1 262440715 262440796 -19752868 + C-rich Low_complexity Low_complexity 5 82 0 234 174 0 0 chr1 262441275 262441321 -19752343 + (TG)n Simple_repeat Simple_repeat 1 46 0 31 76 0 0 chr1 262442975 262443041 -19750623 + GC_rich Low_complexity Low_complexity 1 66 0 23 78 0 0 chr1 262443175 262443226 -19750438 + GC_rich Low_complexity Low_complexity 1 51 0 181 163 122 0 chr1 262444550 262444599 -19749065 - MER5A DNA MER1_type -22 167 113 2402 66 0 10 chr1 262445516 262445819 -19747845 + AluY SINE Alu 1 300 -11 216 0 0 0 chr1 262445886 262445910 -19747754 + (TA)n Simple_repeat Simple_repeat 1 24 0 401 29 71 0 chr1 262445911 262445981 -19747683 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 209 33 33 0 chr1 262446283 262446313 -19747351 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 834 110 27 9 chr1 262446325 262446544 -19747120 + (TCCA)n Simple_repeat Simple_repeat 1 223 0 346 248 217 13 chr1 262446732 262446889 -19746775 - L3 LINE CR1 -42 1535 1347 2217 86 7 0 chr1 262446896 262447187 -19746477 - AluSc SINE Alu -16 293 1 217 320 82 0 chr1 262447216 262447313 -19746351 + L2 LINE L2 3168 3272 0 387 66 44 44 chr1 262447313 262447404 -19746260 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 546 89 100 0 chr1 262447464 262447747 -19745917 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 201 89 67 0 chr1 262447759 262447804 -19745860 + (TGGA)n Simple_repeat Simple_repeat 3 50 0 470 145 52 29 chr1 262447835 262448007 -19745657 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 1207 167 4 39 chr1 262448877 262449111 -19744553 - AluJo SINE Alu 0 312 87 1113 287 60 14 chr1 262449112 262449689 -19743975 - L1MD3 LINE L1 -10 7985 7266 188 330 99 0 chr1 262450800 262450891 -19742773 - L2 LINE L2 -35 3237 3138 263 250 10 0 chr1 262451167 262451267 -19742397 + (TG)n Simple_repeat Simple_repeat 1 101 0 370 216 47 0 chr1 262451301 262451472 -19742192 + (TG)n Simple_repeat Simple_repeat 1 179 0 472 231 29 19 chr1 262451489 262451811 -19741853 + (TG)n Simple_repeat Simple_repeat 1 325 0 2295 149 78 8 chr1 262452506 262452902 -19740762 - MSTA LTR MaLR -4 424 1 248 259 17 86 chr1 262453310 262453426 -19740238 + L2 LINE L2 3180 3287 -26 1046 128 0 0 chr1 262453470 262453619 -19740045 - FRAM SINE Alu -8 168 20 924 259 136 17 chr1 262454234 262454697 -19738967 - L1ME1 LINE L1 -274 5892 5363 1691 161 29 4 chr1 262454704 262454983 -19738681 - AluJo SINE Alu -21 291 6 1202 170 113 0 chr1 262455005 262455235 -19738429 - AluJo SINE Alu -56 256 1 1171 176 27 46 chr1 262455235 262455497 -19738167 + MSTB1 LTR MaLR 175 431 -1 1260 198 55 40 chr1 262456364 262456579 -19737085 - MLT1A1 LTR MaLR 0 365 143 2190 136 113 18 chr1 262456579 262456970 -19736694 - MSTA LTR MaLR 0 428 1 1260 198 55 40 chr1 262456970 262457090 -19736574 - MLT1A1 LTR MaLR -222 143 26 1838 122 4 0 chr1 262457099 262457353 -19736311 - AluSx SINE Alu -57 255 1 281 171 0 0 chr1 262457353 262457411 -19736253 - MLT1A1 LTR MaLR -315 50 1 793 306 39 23 chr1 262457704 262457792 -19735872 + L1M4 LINE L1 4844 4929 -1233 1043 247 89 81 chr1 262457792 262458185 -19735479 + MSTD LTR MaLR 1 396 0 793 306 39 23 chr1 262458185 262458668 -19734996 + L1M4 LINE L1 4929 5422 -740 313 311 14 0 chr1 262458739 262458813 -19734851 + L1ME3A LINE L1 6087 6161 -9 505 346 104 57 chr1 262459079 262459252 -19734412 + L1MEd LINE L1 521 684 -5435 2380 78 0 13 chr1 262459252 262459561 -19734103 + AluY SINE Alu 1 305 -6 505 346 104 57 chr1 262459561 262459783 -19733881 + L1MEd LINE L1 684 894 -5225 1805 85 72 78 chr1 262459783 262460089 -19733575 + AluSp SINE Alu 1 304 -9 369 0 0 0 chr1 262460089 262460130 -19733534 + (TA)n Simple_repeat Simple_repeat 1 41 0 505 346 104 57 chr1 262460130 262460192 -19733472 + L1MEd LINE L1 893 1002 -5117 267 247 79 0 chr1 262460192 262460281 -19733383 + HAL1 LINE L1 1 96 -2411 24 0 0 0 chr1 262460294 262460318 -19733346 + AT_rich Low_complexity Low_complexity 1 24 0 217 122 0 41 chr1 262460414 262460463 -19733201 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2960 288 110 17 chr1 262460470 262461901 -19731763 + HAL1 LINE L1 104 1668 -839 640 291 160 8 chr1 262461918 262462293 -19731371 + HAL1 LINE L1 1899 2330 -177 880 236 42 18 chr1 262462671 262462735 -19730929 - MER33 DNA MER1_type -2292 293 232 200 33 0 33 chr1 262462735 262462765 -19730899 + (GTTTG)n Simple_repeat Simple_repeat 1 29 0 1343 120 160 16 chr1 262462765 262463010 -19730654 - AluSx SINE Alu -21 281 1 880 236 42 18 chr1 262463010 262463233 -19730431 - MER33 DNA MER1_type -2352 233 3 195 100 0 0 chr1 262471654 262471684 -19721980 + (TC)n Simple_repeat Simple_repeat 2 31 0 287 219 104 24 chr1 262472598 262472762 -19720902 + (TAGGG)n Simple_repeat Simple_repeat 4 180 0 254 247 77 29 chr1 262472774 262472944 -19720720 + (TAGGG)n Simple_repeat Simple_repeat 3 180 0 318 207 89 35 chr1 262472981 262473150 -19720514 + (TAGGG)n Simple_repeat Simple_repeat 3 180 0 319 196 77 48 chr1 262473216 262473384 -19720280 + (TAGGG)n Simple_repeat Simple_repeat 3 175 0 235 238 76 47 chr1 262473488 262473660 -19720004 + (TAGGG)n Simple_repeat Simple_repeat 3 179 0 577 236 13 0 chr1 262476393 262476550 -19717114 + L1M3 LINE L1 5339 5497 -686 1606 186 3 10 chr1 262476552 262476842 -19716822 + AluJo SINE Alu 3 290 -22 310 100 40 0 chr1 262476854 262476904 -19716760 + L1MB3 LINE L1 6125 6176 -7 501 289 79 42 chr1 262477744 262478124 -19715540 - MLT1C LTR MaLR -14 453 60 298 232 31 71 chr1 262478191 262478325 -19715339 + MLT1E LTR MaLR 390 571 -22 1697 166 17 10 chr1 262478465 262478766 -19714898 - AluJo SINE Alu -9 303 1 289 175 16 16 chr1 262479868 262479931 -19713733 + FRAM SINE Alu 69 131 -35 423 98 0 0 chr1 262479933 262479994 -19713670 + (GGAA)n Simple_repeat Simple_repeat 2 62 0 566 244 39 0 chr1 262480398 262480525 -19713139 + FLAM_C SINE Alu 2 133 0 455 249 53 30 chr1 262480535 262480704 -19712960 - Charlie4 DNA MER1_type -1726 235 63 264 184 0 0 chr1 262481568 262481617 -19712047 + L3 LINE CR1 1412 1460 -117 1215 133 52 24 chr1 262482452 262482663 -19711001 - AluJo SINE Alu -11 301 85 22 0 0 0 chr1 262482772 262482794 -19710870 + AT_rich Low_complexity Low_complexity 1 22 0 2296 95 0 3 chr1 262482796 262483102 -19710562 + AluSx SINE Alu 1 305 -7 201 343 39 29 chr1 262483842 262483944 -19709720 + L2 LINE L2 2959 3061 -252 223 235 10 41 chr1 262484797 262484895 -19708769 + G-rich Low_complexity Low_complexity 6 100 0 1172 221 90 0 chr1 262487779 262488046 -19705618 + MER21B LTR ERV1 7 297 -566 2298 91 0 3 chr1 262488155 262488464 -19705200 + AluY SINE Alu 1 308 -3 1607 203 171 39 chr1 262488489 262488957 -19704707 + MER21B LTR ERV1 303 832 -31 842 197 0 56 chr1 262489395 262489573 -19704091 + AluJb SINE Alu 122 289 -23 248 289 23 16 chr1 262490429 262490557 -19703107 + MER20B DNA MER1_type 264 392 -391 278 314 34 8 chr1 262492635 262492753 -19700911 - MLT1J LTR MaLR -350 161 41 352 313 41 0 chr1 262493522 262493669 -19699995 - Tigger8 DNA MER2_type -286 380 228 1527 199 7 3 chr1 262494092 262494379 -19699285 + AluJo SINE Alu 5 292 -20 2200 69 6 104 chr1 262495564 262495899 -19697765 + AluSx SINE Alu 3 304 -8 398 226 66 22 chr1 262496614 262496751 -19696913 - HAL1 LINE L1 -812 1695 1553 947 139 139 0 chr1 262497354 262497556 -19696108 - MER30 DNA MER1_type 0 230 1 180 0 0 0 chr1 262499207 262499227 -19694437 + (GGCTG)n Simple_repeat Simple_repeat 3 22 0 219 260 78 0 chr1 262501483 262501560 -19692104 - MER91A DNA MER1_type 0 196 114 2067 91 35 7 chr1 262502271 262502556 -19691108 + AluSq SINE Alu 5 297 -16 244 161 148 0 chr1 262502624 262502705 -19690959 - MER113 DNA MER1_type? -342 179 87 291 161 0 0 chr1 262503317 262503373 -19690291 + CT-rich Low_complexity Low_complexity 2 57 0 228 208 19 75 chr1 262504670 262504776 -19688888 + C-rich Low_complexity Low_complexity 6 105 0 2197 87 14 0 chr1 262505440 262505729 -19687935 + AluSx SINE Alu 1 293 -19 542 166 200 0 chr1 262505732 262505877 -19687787 + AluJo/FRAM SINE Alu 130 303 -9 276 175 35 0 chr1 262506105 262506162 -19687502 + MLT1A1 LTR MaLR 72 130 -235 2292 217 22 10 chr1 262506277 262506766 -19686898 + LTR42 LTR ERVL 1 495 0 310 276 158 0 chr1 262507165 262507292 -19686372 - L2 LINE L2 -842 2472 2326 1895 145 3 41 chr1 262509054 262509371 -19684293 + AluJo SINE Alu 1 305 -7 241 279 58 12 chr1 262510386 262510472 -19683192 - MER5A DNA MER1_type -26 163 74 2574 91 25 107 chr1 262512800 262513163 -19680501 - MER4E LTR ERV1 0 766 375 2414 105 0 0 chr1 262513163 262513468 -19680196 + AluSg SINE Alu 5 309 -1 2574 91 25 107 chr1 262513468 262513674 -19679990 - MER4E LTR ERV1 -391 375 94 2304 85 7 10 chr1 262513674 262513969 -19679695 + AluSx SINE Alu 1 294 -18 2574 91 25 107 chr1 262513969 262514056 -19679608 - MER4E LTR ERV1 -672 94 1 2610 121 29 0 chr1 262514062 262514475 -19679189 - MER57B LTR ERV1 -9 425 1 9326 98 143 66 chr1 262514479 262516237 -19677427 - MER57B-int LTR ERV1 -4 7533 5640 2169 118 0 0 chr1 262516237 262516541 -19677123 - AluSg SINE Alu 0 304 1 1964 112 94 37 chr1 262517412 262517743 -19675921 - MER57B-int LTR ERV1 -1893 5644 5288 2058 151 0 10 chr1 262517743 262518042 -19675622 - AluSx SINE Alu -16 296 1 1964 112 94 37 chr1 262518042 262518084 -19675580 - MER57B-int LTR ERV1 -2249 5288 5250 5891 138 49 70 chr1 262518085 262518368 -19675296 - MER57B-int LTR ERV1 -1333 3584 3297 2317 111 3 3 chr1 262518368 262518675 -19674989 + AluSq SINE Alu 1 307 -6 1987 147 0 47 chr1 262518685 262519004 -19674660 + AluSx SINE Alu 1 304 -8 5891 138 49 70 chr1 262519004 262519084 -19674580 - MER57B-int LTR ERV1 -1629 3288 3208 2406 82 3 0 chr1 262519084 262519376 -19674288 + AluSp SINE Alu 1 293 -20 5891 138 49 70 chr1 262519376 262519945 -19673719 - MER57B-int LTR ERV1 -1709 3208 2628 180 0 0 0 chr1 262519945 262519965 -19673699 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 5891 138 49 70 chr1 262519965 262520566 -19673098 - MER57B-int LTR ERV1 -2289 2628 2016 2338 80 7 0 chr1 262520566 262520852 -19672812 - AluY SINE Alu -18 293 6 5891 138 49 70 chr1 262520852 262522454 -19671210 - MER57B-int LTR ERV1 -2901 2016 288 4224 133 29 1 chr1 262522448 262523101 -19670563 - MER57B-int LTR ERV1 -6862 675 5 * 2660 116 28 2 chr1 262523105 262523528 -19670136 - MER57B LTR ERV1 0 434 1 2598 198 87 7 chr1 262523807 262524458 -19669206 - MER21B LTR ERV1 -52 811 39 1698 214 165 19 chr1 262524460 262524998 -19668666 - LTR48B LTR ERV1 -23 621 5 353 291 22 15 chr1 262525626 262525760 -19667904 + MER87 LTR ERV1 407 541 0 3891 137 81 9 chr1 262526013 262526670 -19666994 + MER50 LTR ERV1 8 711 -23 262 273 49 35 chr1 262526715 262526858 -19666806 + MER50-int LTR ERV1 56 200 -4671 1156 207 138 49 chr1 262526900 262527291 -19666373 - LTR47A LTR ERVL -26 426 1 474 212 33 53 chr1 262527495 262527646 -19666018 - MER54B LTR ERVL -546 247 100 327 256 88 88 chr1 262527719 262527879 -19665785 + LTR57-int LTR ERVL 266 425 -4918 * 346 212 0 41 chr1 262527778 262527890 -19665774 + MER50-int LTR ERV1 817 965 -878 315 0 0 0 chr1 262528076 262528111 -19665553 + (A)n Simple_repeat Simple_repeat 1 35 0 1945 108 125 31 chr1 262528953 262529305 -19664359 - MSTA LTR MaLR -2 426 42 192 77 0 0 chr1 262529306 262529332 -19664332 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1704 211 0 6 chr1 262529334 262529646 -19664018 - AluJb SINE Alu -2 310 1 267 137 98 0 chr1 262529646 262529697 -19663967 - MSTA LTR MaLR -372 56 1 866 154 23 0 chr1 262530024 262530154 -19663510 - AluSq/x SINE Alu -179 133 1 434 336 53 60 chr1 262530324 262530658 -19663006 + MER87-int LTR ERV1 158 490 -4157 2543 64 0 0 chr1 262530658 262530955 -19662709 - AluY SINE Alu -14 297 1 434 336 53 60 chr1 262530955 262531034 -19662630 + MER87-int LTR ERV1 490 568 -4079 2386 132 55 29 chr1 262531452 262531869 -19661795 + MSTC LTR MaLR 1 428 0 288 29 0 0 chr1 262531878 262531913 -19661751 - U2 snRNA snRNA -152 36 2 1417 184 12 4 chr1 262532000 262532250 -19661414 + AluJo SINE Alu 40 291 -21 2679 48 0 3 chr1 262532580 262532891 -19660773 - AluY SINE Alu -1 310 1 889 119 113 25 chr1 262533372 262533532 -19660132 - MSTC LTR MaLR -71 357 184 262 250 76 8 chr1 262533987 262534119 -19659545 + MER87-int LTR ERV1 1797 1937 -2999 1745 190 75 93 chr1 262534286 262534577 -19659087 + MER87-int LTR ERV1 2308 2603 -3728 1991 167 0 0 chr1 262534577 262534889 -19658775 - AluJb SINE Alu 0 312 1 1745 190 75 93 chr1 262534889 262535210 -19658454 + MER87-int LTR ERV1 2603 2928 -3403 1641 138 32 80 chr1 262535210 262535521 -19658143 + AluJb SINE Alu 1 296 -16 1745 190 75 93 chr1 262535521 262535866 -19657798 + MER87-int LTR ERV1 2928 4595 -1736 2254 135 11 11 chr1 262535875 262536224 -19657440 - MER21A LTR ERV1 -2 929 581 2252 117 7 0 chr1 262536240 262536548 -19657116 - AluSx SINE Alu -2 310 1 1838 165 159 92 chr1 262536944 262537490 -19656174 - MER21A LTR ERV1 -348 583 1 1703 195 59 25 chr1 262537500 262537905 -19655759 + MER57-int LTR ERV1 3307 3725 -1211 599 243 0 20 chr1 262537940 262538092 -19655572 + FRAM SINE Alu 25 173 -3 2295 249 85 52 chr1 262538102 262538993 -19654671 + MER57-int LTR ERV1 3254 4174 -697 2370 199 37 33 chr1 262539049 262539424 -19654240 + MER57-int LTR ERV1 6636 7015 -522 2315 109 23 0 chr1 262539424 262539726 -19653938 + AluSg SINE Alu 1 309 -1 2370 199 37 33 chr1 262539726 262539862 -19653802 + MER57-int LTR ERV1 7015 7149 -388 311 114 0 0 chr1 262539863 262539907 -19653757 + LTR54B LTR ERV1 8 51 -447 1630 174 7 42 chr1 262540400 262540687 -19652977 - AluJb SINE Alu -16 296 20 21 36 0 0 chr1 262540692 262540720 -19652944 + AT_rich Low_complexity Low_complexity 1 28 0 635 304 96 16 chr1 262540783 262541086 -19652578 + MLT1A1 LTR MaLR 39 365 0 709 263 46 4 chr1 262541086 262541326 -19652338 + MER89 LTR ERV1 310 559 0 612 297 55 0 chr1 262541326 262541545 -19652119 - L1ME LINE L1 -471 5693 5463 201 94 0 0 chr1 262541920 262541952 -19651712 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 323 217 0 76 chr1 262542060 262542244 -19651420 + G-rich Low_complexity Low_complexity 5 174 0 266 185 0 93 chr1 262542302 262542453 -19651211 + G-rich Low_complexity Low_complexity 1 137 0 221 259 0 80 chr1 262542588 262542750 -19650914 + G-rich Low_complexity Low_complexity 5 153 0 663 210 0 14 chr1 262543038 262543176 -19650488 + FRAM SINE Alu 25 160 -16 699 250 105 72 chr1 262543192 262543470 -19650194 - L1MD1 LINE L1 -47 6195 5897 2419 91 3 13 chr1 262543470 262543778 -19649886 + AluSx SINE Alu 1 305 -7 699 250 105 72 chr1 262543778 262543927 -19649737 - L1MD1 LINE L1 -345 5897 5754 1277 192 19 64 chr1 262543927 262544286 -19649378 + MLT1B LTR MaLR 1 343 -47 1746 239 42 7 chr1 262544302 262544702 -19648962 - L1MD1 LINE L1 -491 5751 5332 2248 115 3 16 chr1 262544702 262545014 -19648650 - AluSx SINE Alu -4 308 1 1746 239 42 7 chr1 262545014 262545060 -19648604 - L1MD1 LINE L1 -910 5332 5289 1788 160 56 0 chr1 262545069 262545359 -19648305 - AluJo SINE Alu -8 304 1 1759 269 79 7 chr1 262545391 262545972 -19647692 + MER82 DNA MER2_type 1 623 -30 594 293 12 8 chr1 262546003 262546168 -19647496 - L1MD1 LINE L1 -923 5223 5055 2189 92 3 22 chr1 262546168 262546483 -19647181 - AluSq SINE Alu -4 309 1 594 293 12 8 chr1 262546483 262546566 -19647098 - L1MD1 LINE L1 -1091 5055 4974 * 1566 219 39 7 chr1 262546553 262546963 -19646701 - L1MA4 LINE L1 -24 6276 5854 1348 120 0 0 chr1 262546965 262547148 -19646516 + AluY SINE Alu 1 183 -128 421 85 0 0 chr1 262547399 262547458 -19646206 + Alu SINE Alu 245 303 -7 429 158 0 75 chr1 262547458 262547553 -19646111 - L1MA4 LINE L1 -300 5863 5778 1818 129 11 0 chr1 262547553 262547824 -19645840 - AluSx SINE Alu -16 296 23 429 158 0 75 chr1 262547824 262547856 -19645808 - L1MA4 LINE L1 -385 5778 5745 4972 143 39 16 chr1 262547867 262548982 -19644682 - L1MA4 LINE L1 -743 5403 4340 1145 261 12 73 chr1 262548982 262549328 -19644336 - L1MD1 LINE L1 -1141 5005 4694 1833 130 0 63 chr1 262549328 262549678 -19643986 + AluJb SINE Alu 9 312 0 1145 261 12 73 chr1 262549678 262549810 -19643854 - L1MD1 LINE L1 -1452 4694 4556 1964 208 78 8 chr1 262550727 262551227 -19642437 - L1MB3 LINE L1 -2 6181 5647 756 216 0 0 chr1 262551228 262551362 -19642302 + FLAM_C SINE Alu 1 134 -9 1496 186 27 43 chr1 262551362 262551577 -19642087 - L1MB3 LINE L1 -525 5658 5450 1533 139 143 0 chr1 262551577 262551850 -19641814 - AluSx SINE Alu 0 312 1 1496 186 27 43 chr1 262551850 262552006 -19641658 - L1MB3 LINE L1 -733 5450 5293 336 156 128 28 chr1 262551997 262552106 -19641558 - L1M3 LINE L1 -405 5778 5659 * 675 362 102 42 chr1 262552608 262552827 -19640837 - L1MB3 LINE L1 -895 5251 5047 1758 167 0 4 chr1 262552827 262553108 -19640556 - AluJo SINE Alu -32 280 1 675 362 102 42 chr1 262553108 262553606 -19640058 - L1MB3 LINE L1 -1099 5047 4581 2727 10 0 0 chr1 262553606 262553909 -19639755 - AluYa5 SINE Alu -8 303 1 675 362 102 42 chr1 262553909 262554482 -19639182 - L1MB3 LINE L1 -1565 4581 3882 645 167 0 0 chr1 262554530 262554638 -19639026 + MSTB LTR MaLR 1 108 -318 462 283 50 6 chr1 262554669 262554828 -19638836 - Charlie1 DNA MER1_type -2595 166 1 1376 249 82 27 chr1 262555192 262555641 -19638023 + MLT2B2 LTR ERVL 3 476 -39 217 133 24 60 chr1 262555678 262555761 -19637903 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 256 161 0 36 chr1 262555804 262555860 -19637804 + MLT2C2 LTR ERVL 416 464 0 800 154 0 0 chr1 262556041 262556164 -19637500 - FLAM_C SINE Alu -20 123 1 483 265 88 56 chr1 262556233 262556448 -19637216 - L1M4 LINE L1 -944 6013 5792 2151 160 2 15 chr1 262556456 262556868 -19636796 - L1MB7 LINE L1 -179 6005 5599 1323 233 84 78 chr1 262556893 262557357 -19636307 - MLT1C LTR MaLR 0 467 1 310 289 96 10 chr1 262557459 262557563 -19636101 - L1M4 LINE L1 -1299 5658 5546 548 15 0 0 chr1 262558264 262558330 -19635334 - AluY SINE Alu -12 299 234 2321 98 0 0 chr1 262558421 262558726 -19634938 - AluY SINE Alu -6 305 1 367 247 0 0 chr1 262559238 262559331 -19634333 - L1M4 LINE L1 -4813 2146 2054 * 1789 232 81 37 chr1 262559326 262560442 -19633222 - L1M4 LINE L1 -5014 1841 663 2180 121 0 3 chr1 262560871 262561176 -19632488 + AluSg SINE Alu 3 306 -4 1989 170 30 55 chr1 262561627 262562007 -19631657 - L1MB3 LINE L1 0 6183 5817 2124 92 7 0 chr1 262562007 262562314 -19631350 + AluSq SINE Alu 1 309 0 1989 170 30 55 chr1 262562314 262562439 -19631225 - L1MB3 LINE L1 -366 5817 5690 801 165 0 8 chr1 262562439 262562566 -19631098 + FLAM_C SINE Alu 1 126 -17 768 162 7 0 chr1 262562583 262562725 -19630939 - L1MB3 LINE L1 -484 5699 5557 255 61 0 0 chr1 262562925 262562958 -19630706 + (T)n Simple_repeat Simple_repeat 1 33 0 1272 113 99 0 chr1 262563346 262563568 -19630096 + L1MA4 LINE L1 5694 5937 -363 514 142 38 19 chr1 262563568 262563657 -19630007 + L1MA9 LINE L1 6202 6309 -3 738 236 16 0 chr1 262563657 262563680 -19629984 + L1PB1 LINE L1 5942 5963 -188 867 190 11 0 chr1 262563840 262564019 -19629645 + L1MA4 LINE L1 5942 6122 -178 1019 220 5 9 chr1 262564019 262564237 -19629427 - MER8 DNA MER2_type -1 238 22 898 146 92 0 chr1 262564238 262564402 -19629262 + L1MA4 LINE L1 6116 6294 -6 969 204 13 26 chr1 262564611 262564837 -19628827 + AluJb SINE Alu 1 223 -89 438 92 0 0 chr1 262565022 262565087 -19628577 + L1MA9 LINE L1 6243 6307 -5 284 271 115 0 chr1 262565260 262565356 -19628308 - L1MD3 LINE L1 -171 7824 7718 236 309 122 36 chr1 262565412 262565551 -19628113 + MIR SINE MIR 80 230 -32 400 224 149 6 chr1 262566621 262566795 -19626869 + MLT1A1 LTR MaLR 1 199 -166 1695 157 3 17 chr1 262569850 262570150 -19623514 - AluJb SINE Alu -16 296 1 1031 86 0 0 chr1 262572600 262572740 -19620924 + AluSp/q SINE Alu 162 301 -12 1425 167 52 4 chr1 262572740 262573009 -19620655 - AluJb SINE Alu -30 282 1 265 188 25 0 chr1 262577386 262577466 -19616198 + (TG)n Simple_repeat Simple_repeat 1 82 0 1233 252 165 27 chr1 262586546 262586995 -19606669 - LTR64 LTR ERVK 0 513 3 1351 162 98 0 chr1 262587351 262587628 -19606036 - AluJb SINE Alu 0 329 30 258 309 0 0 chr1 262589642 262589723 -19603941 + MER63 DNA MER1_type 700 780 -56 1778 176 0 10 chr1 262590195 262590502 -19603162 - AluJo SINE Alu -8 304 1 2138 118 0 3 chr1 262590508 262590805 -19602859 - AluSx SINE Alu -16 296 1 573 265 59 9 chr1 262590811 262591030 -19602634 - L1ME2 LINE L1 0 6164 5935 2362 97 0 0 chr1 262591030 262591340 -19602324 - AluY SINE Alu 0 311 2 739 192 23 0 chr1 262591484 262591614 -19602050 + AluJo SINE Alu 5 137 -175 275 277 24 12 chr1 262591928 262592011 -19601653 - MIR SINE MIR -119 143 60 368 239 277 5 chr1 262592462 262592650 -19601014 + L1ME2 LINE L1 5906 6144 -20 1745 172 17 3 chr1 262592706 262592996 -19600668 - AluJb SINE Alu -18 294 1 592 279 87 67 chr1 262593985 262594491 -19599173 - MLT1H1 LTR MaLR -8 547 32 347 256 77 17 chr1 262594554 262594671 -19598993 - MLT1L LTR MaLR -145 470 347 2114 188 36 47 chr1 262594720 262595268 -19598396 - MLT1E3 LTR MaLR -4 620 79 1266 221 111 31 chr1 262595654 262596079 -19597585 + MLT1C LTR MaLR 9 467 0 300 151 0 0 chr1 262596080 262596133 -19597531 + MIR SINE MIR 104 156 -106 246 244 35 35 chr1 262596391 262596477 -19597187 + MIR SINE MIR 117 202 -60 1712 186 69 23 chr1 262596682 262597031 -19596633 - MLT1A1 LTR MaLR 0 365 1 666 226 49 37 chr1 262597174 262597417 -19596247 + MLT1A1 LTR MaLR 12 257 -108 1952 153 0 16 chr1 262597417 262597724 -19595940 - AluJo SINE Alu -10 302 1 3529 184 36 8 chr1 262597732 262598394 -19595270 - L1MB7 LINE L1 -16 6666 5986 1801 168 30 0 chr1 262598398 262598696 -19594968 - AluJo SINE Alu 0 312 6 345 200 200 20 chr1 262598696 262598796 -19594868 - L1MB7 LINE L1 -878 5766 5649 1026 170 0 6 chr1 262598796 262598961 -19594703 + AluJo SINE Alu 127 290 -22 3592 228 55 6 chr1 262598962 262600267 -19593397 - L1MB7 LINE L1 -984 5660 3148 1259 201 82 0 chr1 262600307 262600610 -19593054 + MER2 DNA MER2_type 18 345 0 780 277 61 0 chr1 262600610 262600938 -19592726 - L1MB7 LINE L1 -3493 3151 2804 1584 217 7 27 chr1 262601039 262601444 -19592220 - L1MB5 LINE L1 -1 6173 5777 2511 251 48 22 chr1 262601467 262602272 -19591392 - L1MB7 LINE L1 -5555 987 162 2116 301 113 12 chr1 262602309 262603430 -19590234 - L1MC3 LINE L1 -36 7749 6515 248 311 87 0 chr1 262604146 262604249 -19589415 - MER63 DNA MER1_type -98 738 1 240 259 0 0 chr1 262604466 262604547 -19589117 + (TG)n Simple_repeat Simple_repeat 1 81 0 540 337 0 0 chr1 262604654 262604820 -19588844 + (TG)n Simple_repeat Simple_repeat 1 166 0 34 42 0 0 chr1 262606406 262606454 -19587210 + GC_rich Low_complexity Low_complexity 1 48 0 189 0 0 0 chr1 262606533 262606554 -19587110 + (GGA)n Simple_repeat Simple_repeat 2 22 0 184 73 0 49 chr1 262606990 262607031 -19586633 + (CCCCCG)n Simple_repeat Simple_repeat 4 42 0 182 299 8 0 chr1 262608151 262608268 -19585396 + (TG)n Simple_repeat Simple_repeat 1 118 0 868 225 14 0 chr1 262609065 262609278 -19584386 - MLT2B1 LTR ERVL -304 216 1 1754 156 24 0 chr1 262609278 262609566 -19584098 + AluJb SINE Alu 1 295 -17 277 167 0 0 chr1 262609579 262609627 -19584037 - MLT2C2 LTR ERVL -223 241 194 296 125 18 0 chr1 262609665 262609721 -19583943 + MLT2B2 LTR ERVL 459 515 0 1831 199 14 3 chr1 262609802 262610169 -19583495 - MLT1B LTR MaLR -11 379 9 925 178 16 16 chr1 262612013 262612198 -19581466 + MER31A LTR ERV1 1 185 -300 880 210 95 12 chr1 262612574 262612585 -19581079 + L1MB3 LINE L1 5814 5823 -360 1491 134 120 21 chr1 262612585 262612869 -19580795 + AluJo SINE Alu 1 312 0 880 210 95 12 chr1 262612869 262613100 -19580564 + L1MB3 LINE L1 5823 6076 -107 22 56 0 0 chr1 262613779 262613815 -19579849 + GC_rich Low_complexity Low_complexity 1 36 0 628 241 165 27 chr1 262614591 262614960 -19578704 - HAL1 LINE L1 -760 1747 1328 559 253 114 35 chr1 262614963 262615066 -19578598 + MER58A DNA MER1_type 4 97 -2323 2357 92 0 0 chr1 262615066 262615370 -19578294 - AluSq SINE Alu -9 304 1 559 253 114 35 chr1 262615370 262615468 -19578196 + MER58A DNA MER1_type 97 221 -3 1912 179 32 25 chr1 262615776 262616183 -19577481 + Tigger2a DNA MER2_type 25 434 0 2532 190 35 16 chr1 262617160 262617623 -19576041 - L1MC1 LINE L1 -11 6333 5823 2336 64 0 14 chr1 262617623 262617920 -19575744 - AluSg SINE Alu -17 293 1 2532 190 35 16 chr1 262617920 262618082 -19575582 - L1MC1 LINE L1 -521 5823 5665 1543 160 153 0 chr1 262618082 262618344 -19575320 - AluJo SINE Alu 0 302 1 592 278 98 6 chr1 262618751 262618924 -19574740 + MER53 DNA DNA 1 189 0 233 188 375 0 chr1 262618942 262619038 -19574626 + MER20 DNA MER1_type 47 178 -41 180 0 0 0 chr1 262619830 262619850 -19573814 + (TTG)n Simple_repeat Simple_repeat 2 21 0 323 244 73 101 chr1 262619855 262620304 -19573360 - L1MD2 LINE L1 -12 6345 5780 633 287 20 16 chr1 262620315 262620562 -19573102 - L1MD2 LINE L1 -513 5729 5482 292 239 0 60 chr1 262621885 262622261 -19571403 + (ACGTG)n Simple_repeat Simple_repeat 1 353 0 1636 97 4 4 chr1 262625235 262625463 -19568201 - AluSc SINE Alu -6 303 76 189 0 0 0 chr1 262625758 262625779 -19567885 + (TG)n Simple_repeat Simple_repeat 1 21 0 306 215 15 0 chr1 262625780 262625845 -19567819 - L1PB4 LINE L1 -17 6139 6074 337 327 40 0 chr1 262625847 262625997 -19567667 - L1PB4 LINE L1 -136 6020 5865 2043 142 7 0 chr1 262626052 262626362 -19567302 + AluJo SINE Alu 1 312 0 274 275 77 19 chr1 262626571 262626827 -19566837 - MER74B LTR ERVL -165 457 124 518 278 75 60 chr1 262627001 262627267 -19566397 + HAL1 LINE L1 964 1233 -1274 187 228 18 18 chr1 262628974 262629031 -19564633 - L2 LINE L2 -227 3045 2989 1249 254 165 25 chr1 262630939 262631387 -19562277 - LTR64 LTR ERVK 0 513 3 1351 162 98 0 chr1 262631743 262632020 -19561644 - AluJb SINE Alu 0 329 30 258 309 0 0 chr1 262634034 262634115 -19559549 + MER63 DNA MER1_type 700 780 -282 1794 173 0 10 chr1 262634587 262634894 -19558770 - AluJo SINE Alu -8 304 1 2138 118 0 3 chr1 262634900 262635197 -19558467 - AluSx SINE Alu -16 296 1 573 265 59 9 chr1 262635203 262635422 -19558242 - L1ME2 LINE L1 0 6164 5935 2362 97 0 0 chr1 262635422 262635732 -19557932 - AluY SINE Alu 0 311 2 739 192 23 0 chr1 262635876 262636006 -19557658 + AluJo SINE Alu 5 137 -175 290 265 24 12 chr1 262636320 262636403 -19557261 - MIR SINE MIR -119 143 60 368 239 277 5 chr1 262636854 262637042 -19556622 + L1ME2 LINE L1 5906 6144 -20 1721 176 17 3 chr1 262637098 262637388 -19556276 - AluJb SINE Alu -18 294 1 592 279 87 67 chr1 262638377 262638883 -19554781 - MLT1H1 LTR MaLR -8 547 32 347 256 77 17 chr1 262638946 262639063 -19554601 - MLT1L LTR MaLR -145 470 347 2131 186 36 47 chr1 262639112 262639660 -19554004 - MLT1E3 LTR MaLR -4 620 79 1266 221 111 31 chr1 262640046 262640471 -19553193 + MLT1C LTR MaLR 9 467 0 300 151 0 0 chr1 262640472 262640525 -19553139 + MIR SINE MIR 104 156 -106 246 244 35 35 chr1 262640783 262640869 -19552795 + MIR SINE MIR 117 202 -60 1690 183 69 23 chr1 262641074 262641423 -19552241 - MLT1A1 LTR MaLR 0 365 1 666 226 49 37 chr1 262641566 262641809 -19551855 + MLT1A1 LTR MaLR 12 257 -108 1952 153 0 16 chr1 262641809 262642116 -19551548 - AluJo SINE Alu -10 302 1 3549 181 36 8 chr1 262642124 262642786 -19550878 - L1MB7 LINE L1 -16 6666 5986 1839 168 30 0 chr1 262642790 262643093 -19550571 - AluJb SINE Alu 0 312 1 333 183 215 21 chr1 262643095 262643188 -19550476 - L1MB7 LINE L1 -885 5759 5649 1008 176 0 6 chr1 262643188 262643353 -19550311 + AluJo SINE Alu 127 290 -22 3610 210 55 1 chr1 262643355 262644279 -19549385 - L1MB7 LINE L1 -984 5660 4687 1242 229 68 3 chr1 262644288 262644655 -19549009 - L1MB7 LINE L1 -3106 3538 3148 1259 201 82 0 chr1 262644695 262644998 -19548666 + MER2 DNA MER2_type 18 345 0 762 281 83 5 chr1 262644998 262645411 -19548253 - L1MB7 LINE L1 -3493 3151 2699 1666 217 7 27 chr1 262645423 262645828 -19547836 - L1MB5 LINE L1 -1 6173 5777 3264 244 40 24 chr1 262645849 262646815 -19546849 - L1MB7 LINE L1 -5556 986 5 4148 250 61 43 chr1 262646825 262647705 -19545959 - L1MDa LINE L1 -2301 4239 3376 2420 101 0 3 chr1 262647705 262648011 -19545653 - AluSx SINE Alu -7 305 1 4148 250 61 43 chr1 262648011 262649548 -19544116 - L1MDa LINE L1 -3164 3376 1755 351 0 0 0 chr1 262649548 262649587 -19544077 + (CA)n Simple_repeat Simple_repeat 2 40 0 4148 250 61 43 chr1 262649587 262650346 -19543318 - L1MDa LINE L1 -4785 1755 1011 2113 104 13 60 chr1 262650789 262650965 -19542699 - AluSx SINE Alu -9 303 147 2174 107 54 7 chr1 262650965 262651263 -19542401 - AluSx SINE Alu 0 312 1 2113 104 13 60 chr1 262651263 262651402 -19542262 - AluSx SINE Alu -165 147 3 341 270 0 11 chr1 262651994 262652083 -19541581 + (CA)n Simple_repeat Simple_repeat 1 88 0 382 257 11 0 chr1 262652096 262652271 -19541393 + (CA)n Simple_repeat Simple_repeat 1 177 0 232 249 30 0 chr1 262652332 262652497 -19541167 + (CA)n Simple_repeat Simple_repeat 2 171 0 514 238 0 53 chr1 262652503 262652692 -19540972 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2520 47 7 7 chr1 262653549 262653849 -19539815 + AluSc SINE Alu 5 304 -5 1529 167 80 80 chr1 262654014 262654427 -19539237 - LTR42 LTR ERVL 0 495 83 406 288 115 31 chr1 262655122 262655410 -19538254 + L1PB4 LINE L1 5660 5971 -185 * 2387 145 100 18 chr1 262655198 262655707 -19537957 + L1MA8 LINE L1 5738 6288 -3 589 287 58 34 chr1 262655725 262656173 -19537491 + L1MEc LINE L1 1270 1782 -794 358 324 103 5 chr1 262657618 262657822 -19535842 - MIR SINE MIR 0 262 39 491 305 26 33 chr1 262657828 262658251 -19535413 - L1MEc LINE L1 -4651 1745 1326 284 243 28 11 chr1 262658573 262658750 -19534914 + (CA)n Simple_repeat Simple_repeat 1 180 0 309 302 19 0 chr1 262658762 262658868 -19534796 + (CA)n Simple_repeat Simple_repeat 2 109 0 197 238 0 53 chr1 262658868 262659057 -19534607 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 2456 67 7 3 chr1 262659914 262660214 -19533450 + AluY SINE Alu 5 305 -6 1540 165 80 80 chr1 262660379 262660792 -19532872 - LTR42 LTR ERVL 0 495 83 406 288 115 31 chr1 262661487 262661775 -19531889 + L1PB4 LINE L1 5660 5971 -185 * 2387 145 100 18 chr1 262661563 262662072 -19531592 + L1MA8 LINE L1 5738 6288 -3 579 289 58 34 chr1 262662090 262662538 -19531126 + L1MEc LINE L1 1270 1782 -794 497 226 137 39 chr1 262663457 262663661 -19530003 - MIR SINE MIR 0 262 39 409 337 17 26 chr1 262663673 262664091 -19529573 - L1MEc LINE L1 -4657 1739 1326 358 324 103 5 chr1 262664575 262664779 -19528885 - MIR SINE MIR 0 262 39 524 300 26 33 chr1 262664785 262665208 -19528456 - L1MEc LINE L1 -4651 1745 1326 416 315 108 5 chr1 262665691 262665894 -19527770 - MIR SINE MIR 0 262 39 448 290 35 50 chr1 262665903 262666327 -19527337 - L1MEc LINE L1 -4656 1740 1323 1962 116 58 71 chr1 262667515 262667895 -19525769 - THE1C LTR MaLR 0 375 1 846 316 83 35 chr1 262668172 262668605 -19525059 + L1M4 LINE L1 3341 3794 -2352 1415 153 9 114 chr1 262668620 262668954 -19524710 + AluJo SINE Alu 3 301 -1 407 283 70 35 chr1 262668979 262669265 -19524399 + L1M4 LINE L1 4934 5229 -917 18343 76 17 0 chr1 262670564 262672986 -19520678 - HERVL LTR ERVL -426 5228 2765 25 0 0 0 chr1 262673047 262673072 -19520592 + AT_rich Low_complexity Low_complexity 1 25 0 452 353 107 11 chr1 262673222 262673494 -19520170 + L1M4 LINE L1 3343 3640 -2506 1655 137 0 85 chr1 262673496 262673831 -19519833 - AluJb SINE Alu 0 309 1 337 303 98 69 chr1 262673832 262674581 -19519083 + L1P LINE L1 3631 4400 -1746 895 317 48 80 chr1 262674763 262674996 -19518668 + L1M4 LINE L1 4695 4934 -1212 2433 65 0 29 chr1 262674996 262675306 -19518358 - AluY SINE Alu -10 301 1 895 317 48 80 chr1 262675306 262675674 -19517990 + L1M4 LINE L1 4934 5277 -869 2258 110 21 0 chr1 262675687 262676014 -19517650 + MER1B DNA MER1_type 4 337 -2 295 249 34 18 chr1 262677592 262677716 -19515948 + MIR SINE MIR 23 147 -61 1123 103 0 0 chr1 262679558 262679725 -19513939 + FRAM SINE Alu 19 185 0 647 324 61 18 chr1 262679964 262680458 -19513206 + L1M4 LINE L1 3426 3940 -2206 642 144 0 0 chr1 262680497 262680587 -19513077 + AluJ/FLAM SINE Alu 2 91 -221 2142 141 20 0 chr1 262681673 262681979 -19511685 - AluSx SINE Alu 0 312 1 2045 124 0 30 chr1 262682498 262682796 -19510868 - AluSx SINE Alu -23 289 1 744 286 103 67 chr1 262682801 262683906 -19509758 + L1M4 LINE L1 3362 4506 -1640 282 274 131 40 chr1 262684206 262684534 -19509130 + L1M4 LINE L1 4885 5242 -904 1840 166 13 16 chr1 262684597 262684910 -19508754 + AluJo SINE Alu 1 312 0 350 282 98 87 chr1 262686812 262687097 -19506567 + L1M4 LINE L1 3359 3639 -2507 1933 166 0 10 chr1 262687097 262687411 -19506253 + AluJo SINE Alu 1 311 -1 350 282 98 87 chr1 262687411 262688229 -19505435 + L1M4 LINE L1 3639 4478 -1668 1876 151 0 20 chr1 262688229 262688528 -19505136 - AluJo SINE Alu -19 293 1 350 282 98 87 chr1 262688528 262688602 -19505062 + L1M4 LINE L1 4478 4550 -1596 250 280 133 36 chr1 262689037 262689369 -19504295 + L1M4 LINE L1 5011 5374 -772 26 0 0 0 chr1 262691293 262691319 -19502345 + GC_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr1 262691437 262691460 -19502204 + (A)n Simple_repeat Simple_repeat 1 23 0 359 275 87 105 chr1 262691978 262692520 -19501144 + L1M4 LINE L1 3589 4120 -2026 379 333 0 23 chr1 262697364 262697541 -19496123 + G-rich Low_complexity Low_complexity 4 176 0 229 258 0 43 chr1 262704202 262704295 -19489369 + (CTGGGG)n Simple_repeat Simple_repeat 4 92 0 2540 135 53 26 chr1 262705449 262705864 -19487800 - MSTC LTR MaLR -2 426 1 2107 93 4 0 chr1 262706355 262706634 -19487030 + AluSg SINE Alu 1 280 -30 216 0 0 0 chr1 262706638 262706662 -19487002 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 366 206 47 9 chr1 262708626 262708733 -19484931 - MLT1B LTR MaLR -188 202 92 225 245 0 57 chr1 262710630 262710736 -19482928 + G-rich Low_complexity Low_complexity 2 101 0 186 43 0 0 chr1 262711098 262711121 -19482543 + (GCGTG)n Simple_repeat Simple_repeat 1 23 0 1755 151 31 10 chr1 262712258 262712549 -19481115 + AluJo SINE Alu 1 297 -15 599 193 52 22 chr1 262716833 262717119 -19476545 - MLT1B LTR MaLR -16 374 1 1342 246 48 3 chr1 262717119 262717472 -19476192 - MLT1B-int LTR MaLR 0 1735 1367 1384 209 19 0 chr1 262717484 262717752 -19475912 + AluJo SINE Alu 10 282 -30 228 188 174 0 chr1 262717917 262717986 -19475678 - MLT1B-int LTR MaLR -975 760 680 2627 208 40 15 chr1 262718048 262718786 -19474878 - MLT1B-int LTR MaLR -487 884 2 1312 178 38 0 chr1 262718801 262719093 -19474571 - MLT1B LTR MaLR -86 304 2 182 37 37 0 chr1 262719447 262719474 -19474190 + (GA)n Simple_repeat Simple_repeat 1 28 0 1631 175 121 22 chr1 262721907 262722262 -19471402 - MLT1B LTR MaLR 0 390 1 1392 251 50 0 chr1 262722263 262722622 -19471042 - MLT1B-int LTR MaLR -1 1370 994 2518 235 30 10 chr1 262722870 262723624 -19470040 - MLT1B-int LTR MaLR -484 887 1 2035 171 45 5 chr1 262723624 262723999 -19469665 - MLT1B LTR MaLR 0 390 1 651 147 37 0 chr1 262730067 262730230 -19463434 + (TCCA)n Simple_repeat Simple_repeat 1 169 0 204 213 83 65 chr1 262730649 262730757 -19462907 + L3 LINE CR1 1381 1490 -87 648 192 45 0 chr1 262731495 262732120 -19461544 + (TCCA)n Simple_repeat Simple_repeat 1 652 0 193 233 0 0 chr1 262733335 262733378 -19460286 - L3 LINE CR1 -109 1468 1426 1092 227 142 0 chr1 262733818 262734065 -19459599 - AluSx SINE Alu -30 282 1 1878 231 167 43 chr1 262734093 262734813 -19458851 - MER21B LTR ERV1 -2 861 53 579 196 11 17 chr1 262740615 262740794 -19452870 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 859 114 29 0 chr1 262740837 262741012 -19452652 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 849 206 12 8 chr1 262741031 262741516 -19452148 + (TCCA)n Simple_repeat Simple_repeat 1 487 0 200 283 0 0 chr1 262741516 262741569 -19452095 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 378 223 29 12 chr1 262741582 262742006 -19451658 + (TCCA)n Simple_repeat Simple_repeat 1 431 0 185 196 22 0 chr1 262742101 262742147 -19451517 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 274 261 14 0 chr1 262742208 262742346 -19451318 + (TCCA)n Simple_repeat Simple_repeat 4 143 0 539 312 0 7 chr1 262743690 262743828 -19449836 + MIR SINE MIR 17 153 -109 1194 202 9 4 chr1 262743829 262744062 -19449602 + MER8 DNA MER2_type 1 234 -5 2231 254 83 10 chr1 262745330 262746019 -19447645 + MER21B LTR ERV1 1 739 -124 797 249 28 19 chr1 262746049 262746262 -19447402 + MIR SINE MIR 26 240 -22 3205 223 29 19 chr1 262746503 262748075 -19445589 + L1MD2 LINE L1 4265 5855 -504 834 216 12 57 chr1 262748066 262748311 -19445353 + L1MD2 LINE L1 6111 6344 -15 * 918 274 87 5 chr1 262748320 262748699 -19444965 - L1MEc LINE L1 -4542 1854 1445 3728 164 55 33 chr1 262748703 262749680 -19443984 - L1MB7 LINE L1 -30 6154 5156 1285 158 5 19 chr1 262749680 262749889 -19443775 - AluJo SINE Alu -22 290 85 458 171 0 0 chr1 262749889 262749959 -19443705 - FRAM SINE Alu -62 114 45 2060 207 47 23 chr1 262749959 262750514 -19443150 - L1MB7 LINE L1 -979 5167 4600 2632 257 129 25 chr1 262750534 262751702 -19441962 - L1MEc LINE L1 -4961 1435 146 1925 137 0 27 chr1 262751707 262751999 -19441665 + AluJb SINE Alu 13 296 -16 4212 123 26 24 chr1 262752060 262752241 -19441423 - L1PB1 LINE L1 -1 6150 5971 2165 88 41 0 chr1 262752241 262752535 -19441129 - AluY SINE Alu -5 306 1 4212 123 26 24 chr1 262752535 262752720 -19440944 - L1PB1 LINE L1 -180 5971 5788 441 0 0 0 chr1 262752720 262752769 -19440895 + (TA)n Simple_repeat Simple_repeat 1 49 0 4212 123 26 24 chr1 262752769 262753156 -19440508 - L1PB1 LINE L1 -363 5788 5394 2175 74 10 20 chr1 262753262 262753590 -19440074 + AluY SINE Alu 1 311 0 447 184 217 26 chr1 262753604 262753756 -19439908 - MLT1A1 LTR MaLR -181 184 4 229 250 0 50 chr1 262753759 262753839 -19439825 - L1MEc LINE L1 -6312 84 9 205 200 36 0 chr1 262756611 262756666 -19436998 + (TGGG)n Simple_repeat Simple_repeat 1 57 0 261 140 40 0 chr1 262759166 262759216 -19434448 - L3 LINE CR1 -117 1460 1409 25 31 0 0 chr1 262762171 262762203 -19431461 + GC_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chr1 262763974 262764015 -19429649 + (CA)n Simple_repeat Simple_repeat 1 41 0 298 359 13 22 chr1 262764315 262764572 -19429092 + (CATA)n Simple_repeat Simple_repeat 1 254 0 1062 298 72 25 chr1 262767440 262767887 -19425777 - MER77 LTR ERV1 -61 544 77 470 339 131 39 chr1 262767925 262768572 -19425092 - L2 LINE L2 -560 2754 2048 389 258 11 54 chr1 262768700 262768886 -19424778 + (CATA)n Simple_repeat Simple_repeat 3 180 0 212 246 17 29 chr1 262768899 262769074 -19424590 + (CATA)n Simple_repeat Simple_repeat 2 174 0 361 258 17 25 chr1 262769089 262769504 -19424160 + (CATA)n Simple_repeat Simple_repeat 1 411 0 3972 152 14 5 chr1 262770947 262771592 -19422072 - MER39B LTR ERV1 -2 651 1 254 294 15 0 chr1 262771809 262771877 -19421787 - HERVL40 LTR ERVL -2190 3340 3272 558 258 127 28 chr1 262772687 262772978 -19420686 - LTR40b LTR ERVL -3 459 140 322 309 112 0 chr1 262773232 262773384 -19420280 - L2 LINE L2 -1415 1899 1731 23 0 0 0 chr1 262773390 262773413 -19420251 + AT_rich Low_complexity Low_complexity 1 23 0 1388 179 99 0 chr1 262773416 262773678 -19419986 + AluJb SINE Alu 1 288 -24 216 97 0 0 chr1 262773684 262773715 -19419949 + (TG)n Simple_repeat Simple_repeat 2 32 0 345 369 74 15 chr1 262774347 262774618 -19419046 + L1M4c LINE L1 938 1224 -5160 487 336 102 40 chr1 262775208 262775755 -19417909 - L1MEc LINE L1 -4957 1439 859 400 227 119 113 chr1 262777234 262777309 -19416355 - MER3 DNA MER1_type -1 208 135 1667 177 3 30 chr1 262777309 262777614 -19416050 + AluJb SINE Alu 1 297 -15 400 227 119 113 chr1 262777614 262777732 -19415932 - MER3 DNA MER1_type -74 135 14 270 302 111 24 chr1 262778777 262778903 -19414761 + L3 LINE CR1 1407 1543 -34 274 361 0 0 chr1 262779883 262779966 -19413698 + (CA)n Simple_repeat Simple_repeat 2 84 0 211 390 34 17 chr1 262780651 262780769 -19412895 + MIR3 SINE MIR 58 177 -31 733 191 72 72 chr1 262781528 262781577 -19412087 + MER3 DNA MER1_type 1 49 -160 2144 104 7 0 chr1 262781577 262781875 -19411789 + AluSq SINE Alu 2 301 -12 733 191 72 72 chr1 262781875 262782034 -19411630 + MER3 DNA MER1_type 48 209 0 302 341 0 0 chr1 262782038 262782126 -19411538 - MIR3 SINE MIR -32 176 89 217 297 16 0 chr1 262782552 262782616 -19411048 + L3 LINE CR1 1395 1459 -118 246 237 51 0 chr1 262782655 262782714 -19410950 - MIR SINE MIR -91 171 110 223 296 102 0 chr1 262783239 262783327 -19410337 + MIR SINE MIR 107 203 -59 210 344 159 5 chr1 262783649 262783838 -19409826 + MIR SINE MIR 16 233 -29 1666 166 0 28 chr1 262790875 262791164 -19402500 + AluJo SINE Alu 14 294 -18 287 204 9 35 chr1 262791325 262791438 -19402226 + CT-rich Low_complexity Low_complexity 1 110 0 212 242 132 33 chr1 262791517 262791608 -19402056 - MIR3 SINE MIR -21 187 88 266 278 33 0 chr1 262798297 262798387 -19395277 + MER117 DNA MER1_type 90 182 -15 484 307 87 24 chr1 262801915 262802169 -19391495 + MER90 LTR ERV1 345 614 0 1604 131 74 25 chr1 262802317 262802600 -19391064 + AluJo SINE Alu 1 297 -15 1126 192 19 53 chr1 262802772 262803188 -19390476 - MER39 LTR ERV1 -1 706 260 426 176 0 0 chr1 262803193 262803267 -19390397 - MER39 LTR ERV1 -633 74 1 1970 212 56 23 chr1 262803268 262803783 -19389881 - L1MD1 LINE L1 -106 6136 5605 686 250 0 55 chr1 262803779 262803980 -19389684 - L1MD1 LINE L1 -768 5378 5190 * 1823 154 0 27 chr1 262803980 262804278 -19389386 - AluJo SINE Alu -17 295 6 686 250 0 55 chr1 262804278 262804312 -19389352 - L1MD1 LINE L1 -956 5190 5156 1329 178 54 33 chr1 262804317 262804376 -19389288 - L1MB3 LINE L1 -2 6181 6125 2288 96 0 3 chr1 262804376 262804678 -19388986 - AluSx SINE Alu -11 301 1 1329 178 54 33 chr1 262804678 262804950 -19388714 - L1MB3 LINE L1 -58 6125 5843 3131 174 113 17 chr1 262805472 262806218 -19387446 - MER21B LTR ERV1 -18 845 29 312 48 0 0 chr1 262806219 262806261 -19387403 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 559 395 51 42 chr1 262806265 262806736 -19386928 + L1M4 LINE L1 2461 2935 -3211 432 330 63 72 chr1 262807068 262807543 -19386121 + L1MEd LINE L1 712 1182 -4937 567 238 95 14 chr1 262807554 262807764 -19385900 + L1MEd LINE L1 2736 2962 -3167 * 1912 249 70 10 chr1 262807761 262808448 -19385216 + L1M2 LINE L1 1893 2620 -4229 1020 206 43 0 chr1 262808450 262808727 -19384937 + L1M2 LINE L1 3188 3476 -3372 614 286 9 0 chr1 262808731 262808944 -19384720 + L1MEd LINE L1 2424 2638 -3491 2154 125 3 0 chr1 262808946 262809251 -19384413 - AluSq SINE Alu -7 306 1 1806 236 45 27 chr1 262809258 262809781 -19383883 + MER74B LTR ERVL 1 538 -84 2065 128 23 0 chr1 262809781 262810085 -19383579 - AluSx SINE Alu -1 311 1 1806 236 45 27 chr1 262810085 262810155 -19383509 + MER74B LTR ERVL 538 605 -17 1224 239 62 8 chr1 262810176 262810544 -19383120 + L1MEd LINE L1 2634 3021 -3108 2188 119 0 0 chr1 262810549 262810852 -19382812 + AluSq SINE Alu 11 313 0 2083 111 7 3 chr1 262810865 262811162 -19382502 + AluSx SINE Alu 13 310 -2 330 107 0 0 chr1 262811183 262811239 -19382425 - AluSc SINE Alu -7 292 237 261 140 40 0 chr1 262813015 262813065 -19380599 - L3 LINE CR1 -117 1460 1409 1910 153 0 7 chr1 262819412 262819719 -19373945 + AluJo SINE Alu 1 305 -7 2148 92 3 10 chr1 262821497 262821791 -19371873 - AluSc SINE Alu -17 292 1 263 248 0 27 chr1 262821791 262821821 -19371843 + L1MEd LINE L1 3042 3071 -3058 915 207 0 18 chr1 262821821 262821990 -19371674 + FRAM SINE Alu 1 166 0 1597 166 0 107 chr1 262822000 262822337 -19371327 + AluJb SINE Alu 1 301 -1 263 248 0 27 chr1 262822337 262822444 -19371220 + L1MEd LINE L1 3080 3186 -2943 2015 123 10 0 chr1 262822445 262822737 -19370927 + AluSg SINE Alu 1 295 -15 549 288 66 3 chr1 262822766 262823054 -19370610 + L1MEd LINE L1 3366 3671 -2458 616 171 36 0 chr1 262823076 262823187 -19370477 + FLAM_C SINE Alu 11 125 -18 284 340 105 6 chr1 262823187 262823349 -19370315 + L1MEd LINE L1 3679 3856 -2273 * 323 276 92 7 chr1 262823347 262823499 -19370165 + L1MB7 LINE L1 6011 6175 -9 213 158 0 70 chr1 262823532 262823589 -19370075 + (CAGGG)n Simple_repeat Simple_repeat 3 55 0 547 175 24 8 chr1 262824241 262824367 -19369297 - MLT1A1 LTR MaLR -225 140 13 748 141 31 8 chr1 262825025 262825153 -19368511 + AluJo/FLAM SINE Alu 3 133 -169 1453 166 62 55 chr1 262825155 262825462 -19368202 + AluJb SINE Alu 1 309 -3 1719 142 0 36 chr1 262827751 262828060 -19365604 - AluJo SINE Alu -14 298 1 1760 234 87 87 chr1 262828245 262829030 -19364634 + MER21B LTR ERV1 21 805 -58 1557 235 42 11 chr1 262829919 262830297 -19363367 + MLT1B LTR MaLR 1 390 0 1525 179 14 14 chr1 262830599 262830879 -19362785 + AluJo SINE Alu 31 310 -2 325 227 124 0 chr1 262832022 262832119 -19361545 + L1PB4 LINE L1 6010 6118 -38 216 122 0 0 chr1 262832119 262832160 -19361504 + (A)n Simple_repeat Simple_repeat 1 41 0 1444 187 89 38 chr1 262834825 262835172 -19358492 + MLT1A1 LTR MaLR 1 365 0 195 269 75 0 chr1 262835569 262835636 -19358028 - MIR3 SINE MIR -134 74 3 2225 99 0 0 chr1 262835890 262836184 -19357480 - AluSx SINE Alu -18 294 1 953 235 153 68 chr1 262836734 262837232 -19356432 + MER34 LTR ERV1 3 542 0 23 0 0 0 chr1 262838819 262838842 -19354822 + GC_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr1 262839092 262839123 -19354541 + (T)n Simple_repeat Simple_repeat 1 31 0 284 284 30 22 chr1 262839262 262839396 -19354268 + G-rich Low_complexity Low_complexity 3 137 0 1048 173 30 5 chr1 262842303 262842505 -19351159 - AluJo SINE Alu -1 311 105 1370 201 42 0 chr1 262842741 262843048 -19350616 + MLT1B LTR MaLR 1 397 -70 746 171 186 0 chr1 262843698 262843838 -19349826 - AluJo/FRAM SINE Alu 0 302 137 1206 172 0 41 chr1 262843841 262844062 -19349602 - AluJo SINE Alu -16 296 85 329 186 0 0 chr1 262844063 262844122 -19349542 - FRAM SINE Alu -53 113 55 450 177 0 0 chr1 262844123 262844202 -19349462 + LTR54B LTR ERV1 20 98 -400 1487 193 84 1 chr1 262844242 262844692 -19348972 + LTR31 LTR ERV1 18 547 -72 1801 148 13 35 chr1 262844692 262845010 -19348654 + AluJo SINE Alu 1 311 -1 226 225 0 50 chr1 262845049 262845129 -19348535 + MER34B LTR ERV1 36 111 -454 2297 113 0 0 chr1 262845142 262845452 -19348212 + AluSq SINE Alu 1 310 -3 354 240 39 73 chr1 262845734 262845913 -19347751 + MER34 LTR ERV1 369 541 -1 846 269 48 9 chr1 262846221 262846645 -19347019 + MER34 LTR ERV1 4 532 -10 408 227 34 68 chr1 262847650 262847817 -19345847 + MER31B LTR ERV1 206 385 -100 193 288 6 6 chr1 262848023 262848183 -19345481 + (CA)n Simple_repeat Simple_repeat 1 160 0 205 264 35 35 chr1 262849191 262849278 -19344386 + G-rich Low_complexity Low_complexity 1 87 0 3859 135 11 2 chr1 262849627 262850255 -19343409 - MER41B LTR ERV1 0 635 2 263 297 69 10 chr1 262850307 262850408 -19343256 - MER34 LTR ERV1 -317 225 119 1710 111 60 23 chr1 262850729 262851062 -19342602 - MER4A LTR ERV1 0 664 261 549 133 11 0 chr1 262851062 262851152 -19342512 - MER4A LTR ERV1 -566 98 8 409 258 32 43 chr1 262851308 262851494 -19342170 + MER34 LTR ERV1 311 494 -48 21 36 0 0 chr1 262851910 262851938 -19341726 + AT_rich Low_complexity Low_complexity 1 28 0 1614 211 37 11 chr1 262852263 262852618 -19341046 + MLT1A1 LTR MaLR 1 364 -1 1264 252 97 9 chr1 262852623 262852807 -19340857 - MER34 LTR ERV1 -71 471 304 2006 110 10 41 chr1 262852807 262853120 -19340544 - AluSx SINE Alu 0 305 2 1264 252 97 9 chr1 262853120 262853357 -19340307 - MER34 LTR ERV1 -238 304 11 3148 85 16 0 chr1 262853363 262853788 -19339876 + LTR3 LTR ERVK 1 432 0 1789 161 0 28 chr1 262854017 262854302 -19339362 - AluJo SINE Alu -35 277 1 444 176 118 20 chr1 262854531 262854675 -19338989 - FLAM_A SINE Alu 0 154 1 903 167 20 0 chr1 262854941 262855091 -19338573 + FAM SINE Alu 1 47 -2 2139 91 43 0 chr1 262856215 262856491 -19337173 - AluSx SINE Alu -10 302 15 2393 80 0 32 chr1 262857909 262858220 -19335444 - AluSq SINE Alu -12 301 1 2595 46 0 10 chr1 262858230 262858532 -19335132 - AluY SINE Alu -12 299 1 970 162 5 50 chr1 262858665 262858863 -19334801 + MER34 LTR ERV1 27 215 -327 1386 158 41 60 chr1 262858870 262859187 -19334477 + MSTB1 LTR MaLR 21 331 -101 861 175 0 0 chr1 262859188 262859354 -19334310 + CT-rich Low_complexity Low_complexity 4 169 0 200 279 0 0 chr1 262859358 262859401 -19334263 + polypyrimidine Low_complexity Low_complexity 3 45 0 914 143 154 46 chr1 262859420 262859595 -19334069 - AluJb SINE Alu -118 194 1 1142 113 6 18 chr1 262859602 262859770 -19333894 - AluSg/x SINE Alu -10 300 135 617 161 18 27 chr1 262859770 262859882 -19333782 + MSTB1 LTR MaLR 322 432 0 411 86 0 0 chr1 262859882 262859940 -19333724 + MER34 LTR ERV1 211 268 -274 1346 179 32 7 chr1 262859982 262860261 -19333403 + MER34 LTR ERV1 257 542 0 1221 215 146 11 chr1 262860264 262860291 -19333373 + MER92B LTR ERV1 146 168 -468 2197 146 68 15 chr1 262860291 262860701 -19332963 - MSTB1 LTR MaLR 0 432 1 1221 215 146 11 chr1 262860701 262861106 -19332558 + MER92B LTR ERV1 168 636 0 247 224 17 0 chr1 262862116 262862174 -19331490 + L2 LINE L2 1642 1700 -1614 307 326 7 14 chr1 262862362 262862509 -19331155 + L2 LINE L2 1684 1829 -1485 900 220 20 40 chr1 262863090 262863153 -19330511 - Charlie4a DNA MER1_type -1468 493 430 2158 121 0 17 chr1 262863153 262863451 -19330213 - AluSx SINE Alu -19 293 1 900 220 20 40 chr1 262863451 262863687 -19329977 - Charlie4a DNA MER1_type -1531 430 200 460 167 123 0 chr1 262863695 262863809 -19329855 - L1MCa LINE L1 -4150 2414 2287 1895 146 17 17 chr1 262863812 262864113 -19329551 + AluJb SINE Alu 4 304 -8 655 258 78 37 chr1 262864313 262864431 -19329233 - L1MCa LINE L1 -5021 1024 912 1786 149 3 55 chr1 262864431 262864740 -19328924 + AluJo SINE Alu 1 293 -19 655 258 78 37 chr1 262864740 262864889 -19328775 - L1MCa LINE L1 -5133 912 746 5252 81 16 4 chr1 262864947 262865697 -19327967 + MER4E LTR ERV1 8 766 0 749 245 90 0 chr1 262865697 262865909 -19327755 - L1MCa LINE L1 -5320 725 495 623 124 0 10 chr1 262865920 262866017 -19327647 + MER4A LTR ERV1 3 98 -566 1891 97 3 77 chr1 262866017 262866390 -19327274 + MER4A LTR ERV1 261 664 0 430 278 64 5 chr1 262866390 262866577 -19327087 - L1MCa LINE L1 -5539 506 309 2379 89 0 0 chr1 262868210 262868503 -19325161 + AluSg SINE Alu 1 293 -17 1465 199 20 47 chr1 262868556 262868957 -19324707 - MLT1B LTR MaLR 0 390 1 593 290 114 50 chr1 262869065 262869339 -19324325 + MLT1F1 LTR MaLR 1 256 -311 2278 115 3 10 chr1 262869339 262869653 -19324011 + AluSx SINE Alu 1 312 0 593 290 114 50 chr1 262869653 262869889 -19323775 + MLT1F1 LTR MaLR 256 554 -13 1259 167 80 22 chr1 262872286 262872562 -19321102 + MLT1A1 LTR MaLR 1 292 -73 312 226 0 0 chr1 262873376 262873429 -19320235 + L1MC4 LINE L1 6651 6703 -1339 2208 88 3 20 chr1 262873442 262873738 -19319926 - AluY SINE Alu -20 291 1 413 196 33 0 chr1 262874011 262874103 -19319561 + MLT1A1 LTR MaLR 257 351 -14 2653 169 35 16 chr1 262876184 262876733 -19316931 - L1MB5 LINE L1 -6 6168 5610 2133 110 0 33 chr1 262876778 262876908 -19316756 + AluSx SINE Alu 14 147 -165 2103 92 3 70 chr1 262876908 262877224 -19316440 + AluSq SINE Alu 1 295 -18 2133 110 0 33 chr1 262877224 262877394 -19316270 + AluSx SINE Alu 147 304 -8 553 205 211 0 chr1 262877489 262877650 -19316014 + MER3 DNA MER1_type 1 195 -14 22 0 0 0 chr1 262878166 262878188 -19315476 + AT_rich Low_complexity Low_complexity 1 22 0 362 119 158 10 chr1 262878224 262878325 -19315339 + L1MA5A LINE L1 6174 6289 -8 25 0 0 0 chr1 262879454 262879479 -19314185 + GC_rich Low_complexity Low_complexity 1 25 0 261 0 0 0 chr1 262880710 262880739 -19312925 + (TG)n Simple_repeat Simple_repeat 1 29 0 2397 91 0 3 chr1 262880907 262881215 -19312449 - AluSc SINE Alu -2 307 1 2450 47 0 10 chr1 262882051 262882347 -19311317 - AluSc SINE Alu -16 293 1 24 53 0 0 chr1 262882350 262882388 -19311276 + AT_rich Low_complexity Low_complexity 1 38 0 594 242 177 80 chr1 262882497 262883281 -19310383 - Charlie2 DNA MER1_type -16 2846 1987 1446 206 77 6 chr1 262884307 262884671 -19308993 + L1MA4 LINE L1 5909 6298 -2 237 261 14 14 chr1 262887111 262887180 -19306484 + MER5A DNA MER1_type 38 106 -83 313 327 100 0 chr1 262887255 262887405 -19306259 + MIR SINE MIR 90 254 -8 219 252 114 61 chr1 262887506 262887637 -19306027 + L2 LINE L2 3133 3270 -2 2349 155 26 26 chr1 262887872 262888142 -19305522 + MER31A LTR ERV1 1 274 -211 1834 156 44 0 chr1 262888142 262888503 -19305161 - AluSx SINE Alu 0 373 1 2349 155 26 26 chr1 262888503 262888688 -19304976 + MER31A LTR ERV1 273 457 -28 992 247 14 28 chr1 262888965 262889150 -19304514 + MLT1A1 LTR MaLR 1 182 -183 3175 135 82 10 chr1 262889150 262889756 -19303908 - MER39B LTR ERV1 0 653 4 992 247 14 28 chr1 262889756 262889853 -19303811 + MLT1A1 LTR MaLR 182 279 -86 243 0 0 0 chr1 262889941 262889968 -19303696 + (TG)n Simple_repeat Simple_repeat 2 28 0 1511 132 0 5 chr1 262889968 262890180 -19303484 - AluJo SINE Alu -21 291 81 337 232 0 0 chr1 262890199 262890268 -19303396 + MLT1A1 LTR MaLR 306 374 0 266 203 0 14 chr1 262890342 262890411 -19303253 + GA-rich Low_complexity Low_complexity 2 69 0 204 327 0 0 chr1 262890422 262890474 -19303190 + polypurine Low_complexity Low_complexity 1 52 0 713 133 0 9 chr1 262890783 262890896 -19302768 + FLAM_C SINE Alu 7 118 -25 37 23 0 0 chr1 262891919 262891963 -19301701 + AT_rich Low_complexity Low_complexity 1 44 0 1398 154 8 39 chr1 262893292 262893551 -19300113 + AluJo SINE Alu 49 299 -13 2542 182 44 7 chr1 262893665 262894209 -19299455 + MER34B LTR ERV1 2 565 0 1995 153 22 73 chr1 262894388 262894772 -19298892 + Tigger2a DNA MER2_type 1 360 -2348 1707 166 28 28 chr1 262894772 262895062 -19298602 + AluJo SINE Alu 1 290 -22 1995 153 22 73 chr1 262895062 262895127 -19298537 + Tigger2a DNA MER2_type 360 427 -7 648 90 0 0 chr1 262895340 262895429 -19298235 - AluS SINE Alu -223 90 2 2323 89 20 3 chr1 262895893 262896196 -19297468 + AluY SINE Alu 1 308 -3 1251 199 8 19 chr1 262896207 262896473 -19297191 - MER74A LTR ERVL -23 535 273 358 165 0 76 chr1 262896497 262896576 -19297088 - MER21B LTR ERV1 -92 771 699 192 405 13 0 chr1 262896665 262896744 -19296920 + MIR3 SINE MIR 121 200 -8 792 191 22 87 chr1 262896810 262897040 -19296624 - MER74A LTR ERVL -343 215 1 2010 219 67 49 chr1 262897081 262897710 -19295954 + LTR48B LTR ERV1 3 642 -2 2400 73 33 0 chr1 262897825 262898128 -19295536 - AluSp SINE Alu 0 313 1 1763 195 23 21 chr1 262898310 262898699 -19294965 + MLT1B LTR MaLR 1 390 0 1506 128 6 86 chr1 262898699 262899045 -19294619 - MER4A LTR ERV1 -24 640 263 1868 151 0 24 chr1 262899450 262899774 -19293890 + AluJb SINE Alu 1 317 0 1615 136 169 76 chr1 262899904 262900272 -19293392 - MER4A LTR ERV1 -2 662 261 611 119 20 10 chr1 262900269 262900370 -19293294 - MER4A LTR ERV1 -561 103 2 * 195 42 0 0 chr1 262900762 262900786 -19292878 + (T)n Simple_repeat Simple_repeat 1 24 0 378 0 0 0 chr1 262901663 262901705 -19291959 + (CA)n Simple_repeat Simple_repeat 2 43 0 439 201 113 63 chr1 262901785 262901944 -19291720 - MER21B LTR ERV1 -1 862 696 273 29 0 0 chr1 262901997 262902031 -19291633 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 367 25 0 chr1 262902038 262902117 -19291547 + MIR3 SINE MIR 120 200 -8 2201 162 41 25 chr1 262902155 262902593 -19291071 - MER65A LTR ERV1 0 445 1 2111 123 7 0 chr1 262902931 262903216 -19290448 + AluSx SINE Alu 1 287 -25 2166 121 0 57 chr1 262903302 262903633 -19290031 + AluSx SINE Alu 1 312 0 243 0 0 0 chr1 262903891 262903918 -19289746 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2579 132 85 8 chr1 262904106 262904411 -19289253 + MER39B LTR ERV1 5 360 -293 192 40 0 0 chr1 262904411 262904436 -19289228 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 2579 132 85 8 chr1 262904436 262904601 -19289063 + MER39B LTR ERV1 360 511 -142 2362 77 3 0 chr1 262904601 262904898 -19288766 + AluY SINE Alu 1 298 -13 2125 104 0 4 chr1 262905020 262905300 -19288364 - AluSc SINE Alu -30 279 1 235 184 102 0 chr1 262905307 262905356 -19288308 + MER39B LTR ERV1 600 653 0 662 189 23 11 chr1 262905594 262905769 -19287895 + CT-rich Low_complexity Low_complexity 1 177 0 207 0 0 0 chr1 262905787 262905810 -19287854 + (TC)n Simple_repeat Simple_repeat 1 23 0 1661 167 0 36 chr1 262905810 262906115 -19287549 - AluJo SINE Alu -18 294 1 2317 108 0 13 chr1 262906293 262906471 -19287193 - AluSx SINE Alu -1 311 137 2324 98 3 13 chr1 262906471 262906777 -19286887 - AluSc SINE Alu -6 303 1 2317 108 0 13 chr1 262906777 262906913 -19286751 - AluSx SINE Alu -175 137 1 2355 81 10 0 chr1 262907454 262907752 -19285912 - AluSc SINE Alu -8 301 1 227 254 95 0 chr1 262907984 262908047 -19285617 + MIR SINE MIR 180 248 -14 1295 181 43 126 chr1 262908197 262908538 -19285126 + MLT1C LTR MaLR 1 288 -179 5061 82 51 9 chr1 262908538 262909206 -19284458 - L1PA16 LINE L1 -9 6157 5443 207 0 0 0 chr1 262909206 262909229 -19284435 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 5061 82 51 9 chr1 262909229 262909744 -19283920 - L1PA16 LINE L1 -723 5443 4951 1295 181 43 126 chr1 262909744 262909910 -19283754 + MLT1C LTR MaLR 288 466 -1 291 277 24 12 chr1 262909959 262910042 -19283622 + L2 LINE L2 3230 3313 0 571 236 77 90 chr1 262911085 262911424 -19282240 + MER34B LTR ERV1 23 408 -177 262 61 0 0 chr1 262911422 262911455 -19282209 + MER61A LTR ERV1 311 343 0 * 2719 162 43 145 chr1 262911455 262912285 -19281379 + MER21A LTR ERV1 70 738 -193 1712 155 19 32 chr1 262912285 262912601 -19281063 - AluJo SINE Alu 0 312 1 2719 162 43 145 chr1 262912601 262912754 -19280910 + MER21A LTR ERV1 738 905 -26 1040 219 75 23 chr1 262912811 262913229 -19280435 + MER67B LTR ERV1 165 658 -3 4287 165 47 54 chr1 262913230 262914158 -19279506 - MER49 LTR ERV1 -1 922 1 1424 224 16 32 chr1 262914455 262914475 -19279189 + MLT1A1 LTR MaLR 1 20 -345 3964 107 75 17 chr1 262914475 262915075 -19278589 + MER41B LTR ERV1 1 635 0 1424 224 16 32 chr1 262915075 262915425 -19278239 + MLT1A1 LTR MaLR 20 365 0 3192 163 70 37 chr1 262915505 262916216 -19277448 - L1MA8 LINE L1 -2 6289 5555 2310 88 0 7 chr1 262916289 262916585 -19277079 + AluSg SINE Alu 1 294 -16 1101 163 156 48 chr1 262916782 262916878 -19276786 + AluJo SINE Alu 2 86 -216 238 78 20 20 chr1 262916878 262916929 -19276735 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 1101 163 156 48 chr1 262916929 262917102 -19276562 + AluJo SINE Alu 86 300 -2 434 266 80 0 chr1 262918611 262918724 -19274940 - L2 LINE L2 -9 3304 3183 1687 149 3 86 chr1 262918977 262919175 -19274489 - L1M2 LINE L1 -705 5607 5461 1519 166 46 7 chr1 262919175 262919459 -19274205 - AluJb SINE Alu -7 305 11 1687 149 3 86 chr1 262919459 262919715 -19273949 - L1M2 LINE L1 -851 5461 5185 * 2443 154 132 71 chr1 262919711 262920347 -19273317 + L1MA9 LINE L1 5619 6293 -19 3506 117 6 6 chr1 262920347 262920875 -19272789 + MER41B LTR ERV1 1 528 -107 845 69 43 0 chr1 262921408 262921524 -19272140 + MER41B LTR ERV1 515 635 0 1457 154 71 25 chr1 262921713 262921993 -19271671 + AluJb SINE Alu 1 293 -19 2406 62 7 10 chr1 262923224 262923529 -19270135 + AluSg SINE Alu 2 305 -5 27 29 0 0 chr1 262924808 262924842 -19268822 + GC_rich Low_complexity Low_complexity 1 34 0 1425 159 51 27 chr1 262926400 262926657 -19267007 - AluJo SINE Alu -17 295 33 1483 185 18 4 chr1 262926734 262927015 -19266649 - MLT1A1 LTR MaLR -80 285 1 1528 185 106 83 chr1 262928110 262928195 -19265469 - MER34 LTR ERV1 0 542 460 1973 149 10 10 chr1 262928195 262928503 -19265161 + AluJo SINE Alu 1 308 -4 1528 185 106 83 chr1 262928503 262928536 -19265128 - MER34 LTR ERV1 -82 460 429 2255 106 3 0 chr1 262928536 262928829 -19264835 - AluSx SINE Alu -18 294 1 1528 185 106 83 chr1 262928829 262929142 -19264522 - MER34 LTR ERV1 -113 429 125 1964 135 14 10 chr1 262929142 262929439 -19264225 - AluJo SINE Alu -14 298 1 1528 185 106 83 chr1 262929439 262929476 -19264188 - MER34 LTR ERV1 -417 125 90 1749 120 0 0 chr1 262929476 262929709 -19263955 - AluSc SINE Alu -76 233 1 2425 79 7 3 chr1 262929709 262930012 -19263652 - AluSg SINE Alu -5 305 1 1528 185 106 83 chr1 262930012 262930069 -19263595 - MER34 LTR ERV1 -451 91 1 207 241 0 0 chr1 262930876 262930959 -19262705 + CT-rich Low_complexity Low_complexity 1 83 0 1461 212 106 14 chr1 262932122 262932566 -19261098 - MER31A LTR ERV1 0 485 1 204 376 10 0 chr1 262932721 262932822 -19260842 + L2 LINE L2 1895 1996 -1318 535 131 185 8 chr1 262932834 262932964 -19260700 - L1MA7 LINE L1 -29 6262 6110 460 161 0 43 chr1 262932964 262933057 -19260607 + MER8 DNA MER2_type 1 89 -150 2722 194 67 27 chr1 262933100 262934192 -19259472 - L1MB1 LINE L1 -77 6112 4972 219 316 122 59 chr1 262934362 262934666 -19258998 + L2 LINE L2 2368 2690 -624 690 272 17 26 chr1 262934677 262934950 -19258714 + L1MA9 LINE L1 6032 6291 0 378 227 183 18 chr1 262934951 262935222 -19258442 + L2 LINE L2 2708 3022 -291 12808 136 71 3 chr1 262935917 262938153 -19255511 - Tigger1 DNA MER2_type -1 2417 31 809 277 87 20 chr1 262938266 262938659 -19255005 - MER77 LTR ERV1 -10 595 177 489 213 39 24 chr1 262938722 262938849 -19254815 - MER77 LTR ERV1 -408 197 69 1341 189 82 13 chr1 262938905 262939211 -19254453 + MLT1A1 LTR MaLR 3 329 -36 505 140 242 8 chr1 262939882 262940015 -19253649 + MER4C LTR ERV1 291 655 -9 862 154 6 26 chr1 262940026 262940182 -19253482 - MLT1A1 LTR MaLR -211 154 2 229 171 132 26 chr1 262940182 262940256 -19253408 - MLT1D LTR MaLR -334 171 90 321 271 127 17 chr1 262940401 262940519 -19253145 - MIR SINE MIR -114 148 18 240 119 0 0 chr1 262940789 262940831 -19252833 - L1MA6 LINE L1 -3 6297 6256 311 123 49 99 chr1 262941014 262941095 -19252569 + MLT1B LTR MaLR 1 77 -390 * 1325 140 67 92 chr1 262941094 262941273 -19252391 - MER44D DNA MER2_type -1883 608 426 688 202 0 0 chr1 262941273 262941402 -19252262 + FLAM_A SINE Alu 4 132 -1 1325 140 67 92 chr1 262941402 262941536 -19252128 - MER44D DNA MER2_type -2065 426 33 1458 199 23 0 chr1 262941552 262941858 -19251806 + MLT1B LTR MaLR 76 388 -2 229 284 86 25 chr1 262941858 262941939 -19251725 - MER5A DNA MER1_type -38 151 66 661 258 68 9 chr1 262942031 262942252 -19251412 - MER106A DNA MER1_type -1 235 2 15324 49 0 9 chr1 262942762 262944727 -19248937 + L1P LINE L1 1 1948 -4198 655 12 24 0 chr1 262944727 262944811 -19248853 + (TTTC)n Simple_repeat Simple_repeat 1 86 0 1751 158 4 25 chr1 262944819 262945097 -19248567 - AluJo SINE Alu -32 280 9 2005 162 25 30 chr1 262946043 262946408 -19247256 + MLT1A1 LTR MaLR 3 365 0 340 245 0 36 chr1 262946459 262946598 -19247066 + L1MC4 LINE L1 7908 8041 -1 2350 230 35 7 chr1 262946607 262947211 -19246453 + L1MC1 LINE L1 5711 6333 0 327 311 126 56 chr1 262948244 262948680 -19244984 - L1M4c LINE L1 -1206 1537 958 2141 124 0 7 chr1 262951270 262951561 -19242103 + AluSx SINE Alu 1 289 -23 1319 194 64 36 chr1 262951680 262952071 -19241593 + L1MA4 LINE L1 5809 6210 -90 1042 185 11 22 chr1 262952071 262952255 -19241409 - AluJo SINE Alu -124 188 7 1176 186 30 50 chr1 262952590 262952989 -19240675 + L1MB5 LINE L1 5880 6272 0 5299 120 19 44 chr1 262953141 262954195 -19239469 - L1PA16 LINE L1 0 6166 5152 441 270 18 18 chr1 262955230 262955393 -19238271 + CT-rich Low_complexity Low_complexity 4 166 0 582 158 8 23 chr1 262955485 262955618 -19238046 + CT-rich Low_complexity Low_complexity 6 136 0 242 285 83 52 chr1 262955618 262955811 -19237853 + L1MCa LINE L1 542 740 -5686 1041 234 7 4 chr1 262955936 262956209 -19237455 - L1M4 LINE L1 -1959 4187 3914 1394 164 156 4 chr1 262956224 262956493 -19237171 + AluJb SINE Alu 1 306 0 2175 265 47 6 chr1 262956493 262957224 -19236440 - L1M4 LINE L1 -875 5271 4511 348 291 123 17 chr1 262957341 262957520 -19236144 + L2 LINE L2 3108 3305 -8 270 0 0 0 chr1 262957566 262957596 -19236068 + (CA)n Simple_repeat Simple_repeat 1 30 0 480 167 52 0 chr1 262957712 262957808 -19235856 + L1MC/D LINE L1 5645 5745 -588 811 263 95 8 chr1 262957819 262958199 -19235465 + L1M4 LINE L1 4419 4831 -1315 42423 42 2 1 chr1 262958318 262964463 -19229201 - L1PA4 LINE L1 -2 6153 1 2023 164 0 0 chr1 262964799 262965103 -19228561 + AluSx SINE Alu 1 304 -8 356 286 43 104 chr1 262965235 262965697 -19227967 + L1M4 LINE L1 583 1016 -5526 189 74 0 0 chr1 262966262 262966289 -19227375 + (A)n Simple_repeat Simple_repeat 1 27 0 717 168 1 4 chr1 262966819 262969265 -19224399 + HSAT4 Satellite centromeric 1 2437 -5 475 158 0 0 chr1 262969277 262969359 -19224305 + HSAT4 Satellite centromeric 19 100 -5 258 236 0 0 chr1 262969388 262969443 -19224221 + HSAT4 Satellite centromeric 25 79 -26 568 194 3 0 chr1 262969458 262969753 -19223911 + HSAT4 Satellite centromeric 1 295 -19 2171 80 10 26 chr1 262969753 262969891 -19223773 + AluY SINE Alu 1 140 -171 2346 81 0 10 chr1 262969891 262970206 -19223458 + AluY SINE Alu 1 311 0 2171 80 10 26 chr1 262970206 262970369 -19223295 + AluY SINE Alu 140 297 -14 743 164 3 1 chr1 262970369 262972520 -19221144 + HSAT4 Satellite centromeric 1 2153 -7 692 170 3 1 chr1 262972532 262974453 -19219211 + HSAT4 Satellite centromeric 1 1925 -5 2511 78 74 45 chr1 262974459 262974904 -19218760 + LTR14B LTR ERVK 1 608 0 669 170 4 0 chr1 262974904 262976744 -19216920 + HSAT4 Satellite centromeric 1 1848 -12 727 177 6 1 chr1 262976757 262980649 -19213015 + HSAT4 Satellite centromeric 1 3911 -40 719 176 5 4 chr1 262980660 262985421 -19208243 + HSAT4 Satellite centromeric 1 4770 0 681 185 5 6 chr1 262985451 262991206 -19202458 + HSAT4 Satellite centromeric 1 5744 -19 550 107 48 0 chr1 262991208 262991292 -19202372 + AluSp/q SINE Alu 209 296 -17 763 163 4 1 chr1 262991292 262992587 -19201077 + HSAT4 Satellite centromeric 1 1298 -24 224 280 0 13 chr1 262992596 262992671 -19200993 + (TCTCTG)n Simple_repeat Simple_repeat 3 76 0 253 314 8 8 chr1 262992693 262992811 -19200853 + (TG)n Simple_repeat Simple_repeat 1 118 0 617 64 117 0 chr1 262993420 262993514 -19200150 + 5S rRNA rRNA 1 105 -16 2169 90 0 16 chr1 262993615 262993926 -19199738 - AluY SINE Alu -5 306 1 302 169 0 28 chr1 262994488 262994559 -19199105 + (CACG)n Simple_repeat Simple_repeat 4 72 0 377 216 7 0 chr1 262994589 262994728 -19198936 + GA-rich Low_complexity Low_complexity 1 140 0 2149 94 0 0 chr1 262995667 262995974 -19197690 + AluY SINE Alu 1 307 -4 656 0 0 0 chr1 262995983 262996060 -19197604 - 5S rRNA rRNA 0 121 45 1305 145 35 60 chr1 263196359 263196432 -18997232 - MER44D DNA MER2_type -1889 602 529 2156 149 55 22 chr1 263196432 263196849 -18996815 - MSTB1 LTR MaLR 0 432 2 1305 145 35 60 chr1 263196849 263197058 -18996606 - MER44D DNA MER2_type -1962 529 57 264 282 82 26 chr1 263198507 263198686 -18994978 + MIR3 SINE MIR 15 205 -57 393 215 32 11 chr1 263198731 263198824 -18994840 - MLT1A1 LTR MaLR 0 365 271 523 241 48 14 chr1 263199148 263199293 -18994371 - MLT1A1 LTR MaLR -215 150 1 282 286 0 0 chr1 263199294 263199392 -18994272 + (TG)n Simple_repeat Simple_repeat 1 98 0 637 72 0 0 chr1 263199414 263199497 -18994167 - MER51B LTR ERV1 -83 294 212 180 270 56 56 chr1 263200157 263200246 -18993418 + MIR3 SINE MIR 8 96 -112 30 45 0 0 chr1 263200413 263200457 -18993207 + AT_rich Low_complexity Low_complexity 1 44 0 2060 118 0 3 chr1 263200461 263200757 -18992907 + AluSq SINE Alu 1 295 -18 736 251 52 0 chr1 263201200 263201391 -18992273 + MER58A DNA MER1_type 24 224 0 351 292 51 99 chr1 263201574 263201886 -18991778 - MLT1L LTR MaLR -185 430 134 243 0 0 0 chr1 263202157 263202184 -18991480 + (T)n Simple_repeat Simple_repeat 1 27 0 704 304 39 4 chr1 263202318 263202548 -18991116 - MIR SINE MIR 0 262 25 338 353 93 23 chr1 263202793 263203051 -18990613 - L2 LINE L2 -4 3268 2993 2053 88 14 17 chr1 263203304 263203599 -18990065 - AluSx SINE Alu -18 294 1 300 350 0 0 chr1 263203682 263203779 -18989885 - L2 LINE L2 -3 3310 3214 191 203 43 87 chr1 263204355 263204424 -18989240 + MIR SINE MIR 72 137 -71 281 316 110 15 chr1 263204465 263204601 -18989063 + L2 LINE L2 3165 3313 0 261 273 8 83 chr1 263204690 263204811 -18988853 - L2 LINE L2 -217 3055 2944 299 300 57 81 chr1 263204844 263205091 -18988573 - L2 LINE L2 -178 3094 2854 352 258 32 0 chr1 263205234 263205327 -18988337 + MIR3 SINE MIR 111 206 -2 265 204 56 0 chr1 263205951 263206005 -18987659 - MER91B DNA MER1_type -130 60 4 240 298 77 19 chr1 263206018 263206122 -18987542 - L2 LINE L2 0 3313 3204 1269 136 5 10 chr1 263206386 263206585 -18987079 - AluJo SINE Alu -9 303 106 1419 161 79 15 chr1 263207093 263207396 -18986268 + AluJo SINE Alu 1 320 0 1448 167 8 11 chr1 263207649 263207913 -18985751 - AluJo SINE Alu -7 305 43 375 340 128 30 chr1 263207944 263208453 -18985211 + L2 LINE L2 2696 3271 -1 419 302 9 9 chr1 263208726 263208842 -18984822 + LTR67 LTR ERVL 442 557 0 899 169 6 12 chr1 263209124 263209290 -18984374 - FRAM SINE Alu -11 165 1 1342 188 20 14 chr1 263210731 263211024 -18982640 - AluJo SINE Alu -13 299 5 330 312 29 47 chr1 263211192 263211362 -18982302 - MER5A DNA MER1_type -6 183 17 * 363 328 46 8 chr1 263211233 263211364 -18982300 + MER5A DNA MER1_type 54 189 0 648 323 58 9 chr1 263213355 263213581 -18980083 + MIR SINE MIR 25 261 -1 1791 168 18 26 chr1 263214210 263214392 -18979272 - MLT1A1 LTR MaLR -29 336 157 1465 177 9 63 chr1 263214392 263214708 -18978956 - AluJb SINE Alu -13 299 1 1791 168 18 26 chr1 263214708 263214864 -18978800 - MLT1A1 LTR MaLR -208 157 1 714 135 10 0 chr1 263214952 263215056 -18978608 + AluSq/x SINE Alu 3 107 -206 231 320 50 20 chr1 263215882 263215982 -18977682 - L2 LINE L2 -2 3270 3168 222 265 51 41 chr1 263216606 263216704 -18976960 - MIR SINE MIR -58 150 52 277 327 80 37 chr1 263217110 263217391 -18976273 + L2 LINE L2 2715 3010 -262 1991 105 10 20 chr1 263218055 263218350 -18975314 + AluSg1 SINE Alu 1 292 -17 207 0 0 0 chr1 263218359 263218382 -18975282 + (TG)n Simple_repeat Simple_repeat 2 24 0 211 137 20 20 chr1 263218491 263218542 -18975122 + (TA)n Simple_repeat Simple_repeat 2 52 0 2166 103 3 6 chr1 263218623 263218934 -18974730 + AluY SINE Alu 1 310 -1 1778 158 0 7 chr1 263219314 263219611 -18974053 - AluJo SINE Alu -17 295 1 252 86 0 0 chr1 263220032 263220067 -18973597 + (GA)n Simple_repeat Simple_repeat 2 36 0 311 181 14 0 chr1 263222045 263222117 -18971547 + CT-rich Low_complexity Low_complexity 1 73 0 22 0 0 0 chr1 263222353 263222375 -18971289 + AT_rich Low_complexity Low_complexity 1 22 0 589 253 47 58 chr1 263222385 263222538 -18971126 - MIR SINE MIR -17 245 93 1340 246 174 2 chr1 263222538 263222968 -18970696 + MLT1D LTR MaLR 2 505 0 589 253 47 58 chr1 263222968 263223004 -18970660 - MIR SINE MIR -169 93 58 1692 185 14 0 chr1 263223037 263223334 -18970330 - AluJb SINE Alu -11 301 1 303 254 41 83 chr1 263223355 263223524 -18970140 + L1M4 LINE L1 3024 3185 -2961 5350 113 63 21 chr1 263224468 263225305 -18968359 - MER4D LTR ERV1 0 872 1 306 302 19 9 chr1 263225635 263225741 -18967923 - LTR67 LTR ERVL -42 515 409 191 222 0 44 chr1 263226596 263226641 -18967023 + L2 LINE L2 3263 3305 -8 866 206 69 0 chr1 263227202 263227377 -18966287 - AluJo SINE Alu -7 305 119 462 270 99 13 chr1 263227391 263227543 -18966121 - L2 LINE L2 -5 3308 3144 2036 116 20 0 chr1 263227544 263227836 -18965828 - AluSx SINE Alu -14 298 1 1894 151 6 3 chr1 263227873 263228184 -18965480 - AluJb SINE Alu 0 312 1 198 312 138 0 chr1 263228311 263228449 -18965215 - L2 LINE L2 -786 2528 2372 808 139 8 16 chr1 263228535 263228664 -18965000 + AluJo SINE Alu 1 128 -174 268 205 60 24 chr1 263229261 263229344 -18964320 + MIR SINE MIR 20 105 -103 331 233 100 73 chr1 263229611 263229761 -18963903 - L1MD1 LINE L1 -181 6061 5908 247 296 111 32 chr1 263230004 263230257 -18963407 + L2 LINE L2 2871 3143 -170 4663 177 21 18 chr1 263231937 263233121 -18960543 - L1MB2 LINE L1 -7 6164 4969 860 183 178 0 chr1 263233410 263233590 -18960074 + L1MC2 LINE L1 393 604 -5822 5261 224 23 44 chr1 263233592 263234985 -18958679 + L1MC2 LINE L1 2617 3975 -2451 1631 190 0 6 chr1 263234985 263235296 -18958368 + AluJo SINE Alu 1 309 -3 5261 224 23 44 chr1 263235296 263235452 -18958212 + L1MC2 LINE L1 3975 4133 -2293 1363 197 67 65 chr1 263235452 263235835 -18957829 - MLT1B LTR MaLR -5 391 1 5581 205 68 9 chr1 263235835 263236497 -18957167 + L1MC2 LINE L1 4134 4756 -1868 1883 125 23 141 chr1 263236497 263236613 -18957051 - MLT1B LTR MaLR 0 390 262 1541 172 31 10 chr1 263236613 263236904 -18956760 + AluJo SINE Alu 1 297 -15 1883 125 23 141 chr1 263236904 263237228 -18956436 - MLT1B LTR MaLR -128 262 2 5581 205 68 9 chr1 263237228 263238915 -18954749 + L1MC2 LINE L1 4756 6624 0 927 181 0 0 chr1 263239196 263239356 -18954308 + AluJo SINE Alu 129 288 -24 187 273 131 40 chr1 263239972 263240071 -18953593 - MIR3 SINE MIR -24 184 77 339 299 86 8 chr1 263240099 263240216 -18953448 + L2 LINE L2 3183 3308 -5 816 146 0 8 chr1 263240742 263240872 -18952792 + FLAM_C SINE Alu 3 131 -12 464 296 90 39 chr1 263241137 263241316 -18952348 - MIR SINE MIR -41 167 30 183 309 82 0 chr1 263241542 263241639 -18952025 - L2 LINE L2 -11 3261 3157 414 316 95 39 chr1 263241644 263242255 -18951409 + L2 LINE L2 1928 2572 -742 382 279 18 9 chr1 263242348 263242459 -18951205 + L2 LINE L2 3172 3283 -30 323 314 112 66 chr1 263242463 263243075 -18950589 + L2 LINE L2 2605 3272 0 271 319 96 15 chr1 263243469 263243604 -18950060 - L3b LINE CR1 -116 1467 1322 2196 107 0 0 chr1 263244811 263245111 -18948553 - AluSx SINE Alu -12 300 1 923 224 40 0 chr1 263245420 263245621 -18948043 - L1PB4 LINE L1 -3 6153 5945 2082 113 17 0 chr1 263245768 263246059 -18947605 - AluSx SINE Alu -12 300 5 1401 137 91 25 chr1 263246712 263246885 -18946779 + MLT1B LTR MaLR 1 202 -188 324 0 0 0 chr1 263246885 263246921 -18946743 + (CA)n Simple_repeat Simple_repeat 2 37 0 1401 137 91 25 chr1 263246921 263247032 -18946632 + MLT1B LTR MaLR 202 304 -86 1316 162 4 61 chr1 263248036 263248314 -18945350 + AluJo SINE Alu 46 307 -5 22 0 0 0 chr1 263248314 263248336 -18945328 + AT_rich Low_complexity Low_complexity 1 22 0 1742 127 12 0 chr1 263249174 263249433 -18944231 + L1MC/D LINE L1 5448 5709 -624 855 76 46 7 chr1 263249444 263249825 -18943839 + (TCTA)n Simple_repeat Simple_repeat 3 572 0 305 317 0 24 chr1 263249825 263249907 -18943757 - L1MC4 LINE L1 -1339 6703 6624 271 338 7 54 chr1 263249991 263250139 -18943525 - MER5A DNA MER1_type -45 144 4 420 309 62 11 chr1 263250889 263251067 -18942597 + MIR SINE MIR 2 188 -74 310 353 36 0 chr1 263251682 263251821 -18941843 + MIR SINE MIR 99 242 -20 3108 175 77 15 chr1 263252207 263252976 -18940688 + MER21A LTR ERV1 3 931 0 216 97 0 0 chr1 263253306 263253337 -18940327 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 252 294 29 15 chr1 263254911 263255047 -18938617 + L1M4 LINE L1 3852 3989 -2157 3332 138 50 26 chr1 263255244 263255825 -18937839 + LTR49 LTR ERV1 1 595 0 569 269 170 25 chr1 263256017 263256381 -18937283 - MLT1J LTR MaLR -63 448 32 962 84 0 7 chr1 263257326 263257469 -18936195 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 696 203 0 0 chr1 263257506 263257629 -18936035 - FLAM_A SINE Alu -10 123 1 1551 171 9 179 chr1 263257681 263257780 -18935884 + MLT2D LTR ERVL 1 115 -299 1844 158 0 7 chr1 263257780 263258083 -18935581 - AluJb SINE Alu -9 303 3 1551 171 9 179 chr1 263258083 263258404 -18935260 + MLT2D LTR ERVL 115 357 -57 965 127 0 6 chr1 263258404 263258585 -18935079 + (CA)n Simple_repeat Simple_repeat 1 180 0 1551 171 9 179 chr1 263258585 263258620 -18935044 + MLT2D LTR ERVL 357 396 -18 265 238 100 12 chr1 263258620 263258750 -18934914 + MIR SINE MIR 52 249 -13 899 219 47 19 chr1 263259439 263259654 -18934010 + MER58A DNA MER1_type 4 224 0 297 0 0 0 chr1 263262237 263262270 -18931394 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3928 142 36 20 chr1 263262422 263263110 -18930554 + LTR34 LTR ERV1 1 699 0 3844 124 24 40 chr1 263263457 263263904 -18929760 + LTR36 LTR ERV1 1 437 -174 2067 111 23 7 chr1 263263904 263264211 -18929453 - AluSx SINE Alu 0 312 1 3844 124 24 40 chr1 263264211 263264384 -18929280 + LTR36 LTR ERV1 437 611 0 359 393 15 5 chr1 263265044 263265240 -18928424 - MIR SINE MIR -56 206 9 395 317 21 14 chr1 263265913 263266055 -18927609 - MER5B DNA MER1_type -30 148 6 6433 175 10 18 chr1 263266223 263269469 -18924195 - L1PB1 LINE L1 -2 6149 2685 1691 197 3 0 chr1 263269572 263269881 -18923783 - AluJb SINE Alu 0 312 3 2039 176 136 18 chr1 263271227 263271726 -18921938 + MER74A LTR ERVL 1 558 0 187 359 112 6 chr1 263272494 263272664 -18921000 + MIR3 SINE MIR 1 188 -20 3760 139 47 37 chr1 263273152 263273857 -18919807 - L1MB3 LINE L1 -153 6528 5817 655 140 0 19 chr1 263273873 263273980 -18919684 - FLAM_A SINE Alu -16 126 22 490 222 27 92 chr1 263273989 263274066 -18919598 - L1MB3 LINE L1 -816 5828 5748 2176 109 3 0 chr1 263274066 263274368 -18919296 - AluSx SINE Alu -9 303 1 490 222 27 92 chr1 263274368 263274475 -18919189 - L1MB3 LINE L1 -896 5748 5656 781 113 0 9 chr1 263274491 263274606 -18919058 - FLAM_C SINE Alu -12 131 18 6005 235 46 13 chr1 263274608 263276245 -18917419 - L1MB3 LINE L1 -978 5666 3975 1332 258 23 26 chr1 263276871 263277436 -18916228 - L1MB3 LINE L1 -2621 4023 3461 * 5743 161 9 2 chr1 263277432 263278858 -18914806 - L1PA16 LINE L1 -2 6164 4728 315 83 21 0 chr1 263278858 263278906 -18914758 - L1MB3 LINE L1 -3167 3477 3429 * 5404 202 98 55 chr1 263278902 263281313 -18912351 - L1MB3 LINE L1 -4080 2566 4 264 288 45 0 chr1 263282931 263282997 -18910667 - MIR3 SINE MIR -48 160 92 615 210 17 0 chr1 263283767 263283886 -18909778 + MER45A DNA AcHobo 58 178 0 439 299 71 0 chr1 263283959 263284086 -18909578 + L2 LINE L2 3137 3272 0 598 265 85 5 chr1 263284898 263285098 -18908566 - MIR SINE MIR -25 237 22 304 275 50 12 chr1 263285393 263285473 -18908191 - L2 LINE L2 -8 3305 3223 360 291 122 54 chr1 263285477 263285772 -18907892 + L2 LINE L2 2068 2382 -932 1636 184 14 0 chr1 263287010 263287303 -18906361 - AluJo SINE Alu -13 299 3 1903 227 39 47 chr1 263287737 263288354 -18905310 - LTR9 LTR ERV1 0 612 1 304 163 0 0 chr1 263288669 263288712 -18904952 + FAM SINE Alu 115 157 -22 231 36 0 0 chr1 263288713 263288741 -18904923 + (TAA)n Simple_repeat Simple_repeat 2 29 0 937 185 152 36 chr1 263289839 263290115 -18903549 + MER33 DNA MER1_type 17 324 0 442 151 0 40 chr1 263290570 263290696 -18902968 + CT-rich Low_complexity Low_complexity 4 124 0 * 690 100 0 0 chr1 263290686 263290786 -18902878 + (TCTCC)n Simple_repeat Simple_repeat 5 104 0 746 261 4 75 chr1 263291107 263291375 -18902289 - MER112 DNA MER1_type -6 254 6 2375 99 0 3 chr1 263291859 263292161 -18901503 + AluSg SINE Alu 1 301 -9 660 167 26 0 chr1 263292850 263292964 -18900700 - FRAM SINE Alu -7 169 53 225 278 148 19 chr1 263294428 263294536 -18899128 - MIR SINE MIR -64 144 23 247 406 0 0 chr1 263295319 263295452 -18898212 - MIR SINE MIR -107 155 23 374 315 135 22 chr1 263296528 263296706 -18896958 - MIR SINE MIR -40 222 25 618 211 30 35 chr1 263297221 263297407 -18896257 + L1MC5 LINE L1 7299 7485 -476 1609 209 26 10 chr1 263297407 263297714 -18895950 + AluJb SINE Alu 1 312 0 618 211 30 35 chr1 263297714 263297726 -18895938 + L1MC5 LINE L1 7485 7496 -465 351 113 0 0 chr1 263297726 263297779 -18895885 + (GGA)n Simple_repeat Simple_repeat 2 54 0 690 248 50 80 chr1 263297780 263298256 -18895408 + L1MC5 LINE L1 7474 7935 -26 2092 168 5 19 chr1 263299760 263300130 -18893534 + MLT1A1 LTR MaLR 1 365 0 264 59 0 0 chr1 263301167 263301201 -18892463 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1644 172 31 21 chr1 263301201 263301491 -18892173 - AluJo SINE Alu -19 293 1 234 256 12 47 chr1 263301659 263301745 -18891919 - MER103 DNA DNA -42 124 42 460 280 21 0 chr1 263301815 263301958 -18891706 + MER33 DNA MER1_type 8 153 -171 1963 154 7 7 chr1 263301959 263302257 -18891407 - AluJb SINE Alu -10 302 5 1212 195 43 22 chr1 263302289 263302458 -18891206 + L1MA9 LINE L1 5989 6168 -144 342 0 0 0 chr1 263302458 263302496 -18891168 + (CA)n Simple_repeat Simple_repeat 1 38 0 1212 195 43 22 chr1 263302496 263302603 -18891061 + L1MA9 LINE L1 6168 6271 -41 415 179 19 0 chr1 263302612 263302718 -18890946 + MER33 DNA MER1_type 189 296 -67 249 186 17 17 chr1 263302708 263302767 -18890897 - FLAM SINE Alu -1 132 74 * 3361 64 50 0 chr1 263303410 263303446 -18890218 - MLT2A1 LTR ERVL 0 444 411 273 119 0 0 chr1 263303446 263303488 -18890176 + (TA)n Simple_repeat Simple_repeat 2 43 0 3361 64 50 0 chr1 263303488 263303874 -18889790 - MLT2A1 LTR ERVL -33 411 1 243 301 126 21 chr1 263303989 263304132 -18889532 + MIR SINE MIR 49 206 -56 369 0 0 0 chr1 263304981 263305022 -18888642 + (A)n Simple_repeat Simple_repeat 1 41 0 2263 112 6 10 chr1 263305280 263305592 -18888072 + AluY SINE Alu 1 311 0 940 103 174 0 chr1 263305735 263305890 -18887774 + LTR9 LTR ERV1 69 250 -362 434 257 87 15 chr1 263306870 263307076 -18886588 + HsTC2 DNA Tc2 1573 1793 -105 247 196 0 20 chr1 263307333 263307365 -18886299 + (CATA)n Simple_repeat Simple_repeat 3 35 -17 2926 158 77 28 chr1 263307365 263307939 -18885725 - MER7C DNA MER2_type 0 602 1 247 196 0 20 chr1 263307939 263307957 -18885707 + (CATA)n Simple_repeat Simple_repeat 35 52 0 1446 208 7 3 chr1 263308453 263308761 -18884903 + MER58B DNA MER1_type 27 335 -6 2289 106 10 0 chr1 263309002 263309295 -18884369 - AluSx SINE Alu -8 304 9 2559 84 0 0 chr1 263309325 263309634 -18884030 - AluY SINE Alu -2 309 1 1031 171 35 0 chr1 263309848 263310018 -18883646 - AluJ SINE Alu -17 295 120 180 0 0 0 chr1 263310018 263310038 -18883626 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 816 163 0 0 chr1 263310051 263310180 -18883484 - AluJ SINE Alu -181 131 3 2268 124 0 3 chr1 263310400 263310706 -18882958 - AluSg SINE Alu -5 305 1 507 323 48 0 chr1 263311192 263311378 -18882286 - MIR SINE MIR -48 214 20 683 129 0 0 chr1 263311740 263311841 -18881823 + FLAM_A SINE Alu 35 135 -7 234 326 43 0 chr1 263312189 263312281 -18881383 - L2 LINE L2 -5 3308 3213 267 282 47 0 chr1 263312854 263312939 -18880725 - MER103 DNA DNA -19 147 59 461 300 61 22 chr1 263313384 263313564 -18880100 + MIR SINE MIR 68 254 -8 182 172 33 25 chr1 263313572 263313694 -18879970 + (CA)n Simple_repeat Simple_repeat 2 124 0 1446 144 168 4 chr1 263313869 263314125 -18879539 + AluJb SINE Alu 5 302 0 181 262 33 16 chr1 263315157 263315218 -18878446 + L2 LINE L2 3201 3262 -10 1924 132 98 8 chr1 263315833 263316189 -18877475 + MLT1B LTR MaLR 3 390 0 548 261 43 117 chr1 263316318 263316534 -18877130 - MER46C DNA MER2_type -12 326 144 2435 132 46 29 chr1 263316534 263316951 -18876713 + MSTB LTR MaLR 3 426 0 548 261 43 117 chr1 263316951 263317086 -18876578 - MER46C DNA MER2_type -194 144 1 256 317 56 49 chr1 263317101 263317243 -18876421 - MIR3 SINE MIR -55 153 11 4106 128 7 61 chr1 263317611 263317744 -18875920 - MER50 LTR ERV1 -17 717 578 2186 115 3 10 chr1 263317744 263318049 -18875615 - AluSx SINE Alu -9 303 1 4106 128 7 61 chr1 263318049 263318673 -18874991 - MER50 LTR ERV1 -156 578 1 228 149 0 0 chr1 263318857 263318904 -18874760 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 402 346 35 13 chr1 263319602 263319833 -18873831 + MLT1J LTR MaLR 10 245 -266 2342 89 0 3 chr1 263320187 263320480 -18873184 + AluSc SINE Alu 1 292 -17 904 300 201 20 chr1 263320882 263321487 -18872177 - L2 LINE L2 0 3313 2595 190 235 173 37 chr1 263321479 263321560 -18872104 - MIR SINE MIR -97 165 74 * 271 310 109 35 chr1 263321607 263321781 -18871883 - MIR SINE MIR -56 206 20 198 321 45 71 chr1 263321917 263322029 -18871635 - L2 LINE L2 -23 3249 3141 1479 265 95 11 chr1 263322275 263322811 -18870853 - MLT1G LTR MaLR -8 582 2 4546 183 34 14 chr1 263323389 263325165 -18868499 - L1MB7 LINE L1 0 6682 4870 4956 136 21 10 chr1 263325168 263325987 -18867677 - L1MA7 LINE L1 0 6291 5464 3243 227 28 43 chr1 263325997 263326901 -18866763 - L1MB7 LINE L1 -5639 903 14 452 289 31 0 chr1 263327039 263327198 -18866466 - MER103 DNA DNA -2 164 1 378 309 123 31 chr1 263327961 263328123 -18865541 + MIR3 SINE MIR 30 206 -2 615 310 143 43 chr1 263329262 263329945 -18863719 + L2 LINE L2 2541 3308 -5 719 215 85 17 chr1 263330501 263330678 -18862986 + MER58A DNA MER1_type 36 224 0 234 219 0 0 chr1 263331670 263331734 -18861930 + (TG)n Simple_repeat Simple_repeat 1 64 0 399 316 105 6 chr1 263332857 263333028 -18860636 - MIR SINE MIR -54 208 21 349 298 102 77 chr1 263333098 263333143 -18860521 + L2 LINE L2 2865 2907 -365 2049 181 10 23 chr1 263333143 263333536 -18860128 + MLT1B LTR MaLR 3 390 0 349 298 102 77 chr1 263333536 263333852 -18859812 + L2 LINE L2 2907 3235 -37 230 288 82 0 chr1 263334603 263334676 -18858988 + MIR SINE MIR 105 183 -79 7251 147 14 21 chr1 263336065 263336586 -18857078 - Tigger3b DNA MER2_type -1797 1231 708 2118 108 0 0 chr1 263336586 263336874 -18856790 - AluSx SINE Alu -18 294 7 7251 147 14 21 chr1 263336874 263337001 -18856663 - Tigger3b DNA MER2_type -2320 708 582 1710 146 13 20 chr1 263337001 263337302 -18856362 - AluJo SINE Alu -13 299 1 7251 147 14 21 chr1 263337302 263337607 -18856057 - Tigger3b DNA MER2_type -2446 582 284 2126 168 68 15 chr1 263337607 263338017 -18855647 - MSTB1 LTR MaLR 0 432 1 7251 147 14 21 chr1 263338017 263338300 -18855364 - Tigger3b DNA MER2_type -2744 284 1 286 258 34 22 chr1 263338806 263338895 -18854769 - MER112 DNA MER1_type -104 156 67 509 204 6 0 chr1 263338898 263339065 -18854599 + (TG)n Simple_repeat Simple_repeat 1 168 0 231 208 39 91 chr1 263339071 263339148 -18854516 - MER112 DNA MER1_type -183 77 5 216 82 41 20 chr1 263340899 263340948 -18852716 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr1 263341606 263341629 -18852035 + AT_rich Low_complexity Low_complexity 1 23 0 279 79 0 0 chr1 263342366 263342404 -18851260 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 1874 73 8 0 chr1 263342420 263342666 -18850998 + AluSc SINE Alu 39 286 -23 212 185 0 37 chr1 263342890 263342944 -18850720 + G-rich Low_complexity Low_complexity 6 57 0 290 87 22 0 chr1 263343537 263343583 -18850081 + (TTTTC)n Simple_repeat Simple_repeat 1 47 0 204 243 199 35 chr1 263343635 263343804 -18849860 - MIR SINE MIR -62 146 9 225 204 122 0 chr1 263345212 263345261 -18848403 + L2 LINE L2 3259 3313 0 343 301 0 24 chr1 263345436 263345559 -18848105 - MIR SINE MIR -114 148 29 201 94 0 0 chr1 263345966 263345998 -18847666 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2190 71 14 0 chr1 263346140 263346422 -18847242 + AluSp SINE Alu 1 286 -27 351 0 0 0 chr1 263346422 263346461 -18847203 + (CA)n Simple_repeat Simple_repeat 2 40 0 2146 111 3 0 chr1 263346507 263346804 -18846860 - AluSp SINE Alu -15 298 1 21 0 0 0 chr1 263346880 263346901 -18846763 + AT_rich Low_complexity Low_complexity 1 21 0 499 332 34 78 chr1 263347567 263347977 -18845687 - MLT1I LTR MaLR -15 394 3 222 277 47 34 chr1 263348273 263348421 -18845243 - L2 LINE L2 -291 2981 2832 1790 109 3 97 chr1 263348455 263348776 -18844888 - AluSg SINE Alu -19 291 1 1570 193 0 13 chr1 263348859 263349165 -18844499 - AluJo SINE Alu -10 302 1 3342 266 89 21 chr1 263349819 263349983 -18843681 + L1ME3A LINE L1 3679 3830 -2340 2530 37 0 0 chr1 263349983 263350282 -18843382 + AluY SINE Alu 1 299 -12 3342 266 89 21 chr1 263350282 263352436 -18841228 + L1ME3A LINE L1 3830 6161 -9 365 293 41 24 chr1 263352945 263353068 -18840596 + L1MC4 LINE L1 6578 6702 -1340 2558 149 7 10 chr1 263353087 263353495 -18840169 - Tigger2a DNA MER2_type 0 434 28 1540 193 10 3 chr1 263354793 263355083 -18838581 + AluJo SINE Alu 1 292 -20 3098 28 0 6 chr1 263355087 263355447 -18838217 + L1PA7 LINE L1 5797 6154 0 21 36 0 0 chr1 263355490 263355518 -18838146 + AT_rich Low_complexity Low_complexity 1 28 0 456 261 90 16 chr1 263355713 263355901 -18837763 - MLT1L LTR MaLR -172 443 242 503 163 0 0 chr1 263355918 263355998 -18837666 + FLAM_A SINE Alu 48 127 -15 3170 199 54 3 chr1 263356015 263356677 -18836987 + L1MB4 LINE L1 5485 6180 0 189 107 0 0 chr1 263356757 263356785 -18836879 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 252 238 16 16 chr1 263358108 263358171 -18835493 + LTR48 LTR ERV1 1 63 -724 4701 143 28 78 chr1 263358173 263358529 -18835135 + MER4D LTR ERV1 1 373 -530 2978 34 6 0 chr1 263358529 263358883 -18834781 - L1PA3 LINE L1 -3 6152 5797 4701 143 28 78 chr1 263358883 263359467 -18834197 + MER4D LTR ERV1 373 894 -9 1685 224 90 16 chr1 263359485 263360057 -18833607 + LTR48 LTR ERV1 61 768 -19 425 294 52 91 chr1 263361139 263361327 -18832337 + MIR SINE MIR 39 233 -29 4754 108 11 33 chr1 263361327 263362032 -18831632 - LTR8 LTR ERV1 -1 690 1 1083 163 100 126 chr1 263362040 263362500 -18831164 + LTR7 LTR ERV1 1 448 -2 425 294 52 91 chr1 263362500 263362533 -18831131 + MIR SINE MIR 240 260 -2 243 279 16 0 chr1 263362575 263362636 -18831028 - MIR3 SINE MIR 0 208 147 1933 161 21 3 chr1 263362871 263363198 -18830466 + MER34C LTR ERV1 35 367 -218 390 133 0 0 chr1 263363198 263363258 -18830406 - MSTC LTR MaLR 0 428 369 1886 200 58 23 chr1 263363258 263363860 -18829804 + L1MA4 LINE L1 4538 5200 -946 4693 126 16 13 chr1 263363861 263364369 -18829295 - MER50 LTR ERV1 -23 711 199 6299 75 1 3 chr1 263364369 263365150 -18828514 - LTR17 LTR ERV1 0 780 1 4693 126 16 13 chr1 263365150 263365350 -18828314 - MER50 LTR ERV1 -535 199 1 5455 169 28 7 chr1 263365350 263366420 -18827244 + L1MA4 LINE L1 5197 6289 -11 2034 155 28 34 chr1 263366420 263366775 -18826889 - MSTC LTR MaLR -51 377 25 1874 96 49 13 chr1 263366779 263367166 -18826498 - LTR7 LTR ERV1 -2 448 1 2602 71 48 13 chr1 263367166 263367545 -18826119 - HERVH LTR ERV1 0 7713 7322 1340 129 23 9 chr1 263367543 263367760 -18825904 - HERVH LTR ERV1 -1894 5819 5600 * 3836 135 71 22 chr1 263367761 263368392 -18825272 - HERVH LTR ERV1 -2564 5149 4488 3452 109 4 6 chr1 263368394 263368897 -18824767 - HERVH LTR ERV1 -3720 3993 3492 872 155 20 0 chr1 263368887 263369035 -18824629 - HERVH LTR ERV1 -4423 3290 3140 * 10789 97 5 12 chr1 263369029 263370572 -18823092 - HERVH LTR ERV1 -4726 2987 1456 2011 72 4 0 chr1 263370545 263370807 -18822857 - HERVH LTR ERV1 -7450 263 1 * 2611 102 58 21 chr1 263370809 263371241 -18822423 - LTR7 LTR ERV1 -2 448 1 1326 157 5 5 chr1 263371264 263371487 -18822177 + MER34C LTR ERV1 363 585 0 962 220 154 25 chr1 263372141 263372482 -18821182 - MLT1F1 LTR MaLR 0 542 118 2800 121 9 40 chr1 263372482 263372928 -18820736 + MSTB1 LTR MaLR 1 432 0 962 220 154 25 chr1 263372928 263373062 -18820602 - MLT1F1 LTR MaLR -424 118 3 782 273 125 35 chr1 263373140 263373485 -18820179 - MLT1I LTR MaLR 0 409 34 2090 195 119 89 chr1 263374895 263375631 -18818033 - LTR1B LTR ERV1 -62 958 1 5989 65 30 14 chr1 263375768 263376536 -18817128 - LTR17 LTR ERV1 0 780 1 192 40 0 0 chr1 263376692 263376717 -18816947 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 416 279 144 29 chr1 263376728 263376936 -18816728 + MIR SINE MIR 29 260 -2 2347 187 42 44 chr1 263377088 263377611 -18816053 - LTR26B LTR ERV1 -9 522 1 1275 179 57 11 chr1 263378866 263379129 -18814535 + MLT2C1 LTR ERVL 1 275 -122 318 269 19 37 chr1 263379491 263379599 -18814065 + MIR SINE MIR 116 221 -41 236 271 159 9 chr1 263380861 263380968 -18812696 + MIR SINE MIR 28 150 -112 258 105 0 0 chr1 263381237 263381275 -18812389 + Charlie3 DNA MER1_type 202 239 -2471 235 95 0 24 chr1 263381482 263381524 -18812140 - Charlie3 DNA MER1_type -2669 41 1 235 239 62 92 chr1 263381669 263381799 -18811865 + MIR SINE MIR 20 145 -63 4142 121 56 21 chr1 263382157 263382834 -18810830 - MER50 LTR ERV1 -24 710 10 2122 83 43 46 chr1 263383635 263383985 -18809679 - L1PA16 LINE L1 -12 6154 5806 1833 191 104 9 chr1 263385174 263385597 -18808067 + MLT1C LTR MaLR 1 463 -4 1948 132 140 23 chr1 263387117 263387466 -18806198 + MLT1B LTR MaLR 1 390 0 287 323 89 16 chr1 263387557 263387681 -18805983 - MIR SINE MIR -78 184 52 3610 204 30 41 chr1 263388235 263389173 -18804491 - L1ME1 LINE L1 -5 6161 5229 227 215 23 0 chr1 263390002 263390065 -18803599 + MIR SINE MIR 85 133 -75 785 300 148 13 chr1 263390135 263390779 -18802885 + L2 LINE L2 2585 3313 0 714 214 8 0 chr1 263392237 263392368 -18801296 - FLAM_A SINE Alu -1 132 1 352 330 118 9 chr1 263392676 263392888 -18800776 - L2 LINE L2 -219 3053 2819 4020 139 92 5 chr1 263392889 263393545 -18800119 - MER50 LTR ERV1 -20 714 2 419 306 132 35 chr1 263393592 263393902 -18799762 - L2 LINE L2 -648 2666 2327 1410 187 55 3 chr1 263394502 263394629 -18799035 + AluJo SINE Alu 1 120 -192 180 0 0 0 chr1 263394629 263394649 -18799015 + (TA)n Simple_repeat Simple_repeat 2 21 0 1410 187 55 3 chr1 263394649 263394810 -18798854 + AluJo SINE Alu 120 304 -8 612 277 13 13 chr1 263395196 263395355 -18798309 + MIR SINE MIR 104 262 0 606 262 154 36 chr1 263395454 263395817 -18797847 - MLT1I LTR MaLR -3 406 1 217 261 89 0 chr1 263395818 263395886 -18797778 - MIR SINE MIR -95 113 38 201 184 26 0 chr1 263395987 263396025 -18797639 + (CAA)n Simple_repeat Simple_repeat 3 41 0 1998 96 3 45 chr1 263396032 263396346 -18797318 - AluSc SINE Alu -7 302 2 1639 124 8 12 chr1 263398410 263398667 -18794997 + L1PA16 LINE L1 5902 6157 -9 2876 173 31 15 chr1 263399273 263399817 -18793847 - MER74A LTR ERVL -5 553 1 1561 180 0 24 chr1 263401299 263401588 -18792076 - AluJb SINE Alu -25 287 6 293 214 71 0 chr1 263401997 263402053 -18791611 + FLAM SINE Alu 62 121 -12 2639 126 7 57 chr1 263402332 263402578 -18791086 - MSTB LTR MaLR -3 423 207 2315 71 0 3 chr1 263402578 263402875 -18790789 - AluY SINE Alu -15 296 1 2639 126 7 57 chr1 263402875 263403066 -18790598 - MSTB LTR MaLR -219 207 8 542 230 53 66 chr1 263403234 263403386 -18790278 + MIR SINE MIR 98 247 -15 295 315 28 42 chr1 263403740 263403883 -18789781 + MIR3 SINE MIR 61 201 -7 31 88 0 0 chr1 263404110 263404190 -18789474 + AT_rich Low_complexity Low_complexity 1 80 0 1898 168 57 21 chr1 263405148 263405571 -18788093 - L1MB3 LINE L1 0 6183 5746 22 35 0 0 chr1 263405667 263405696 -18787968 + AT_rich Low_complexity Low_complexity 1 29 0 247 323 11 21 chr1 263405819 263405912 -18787752 - L2 LINE L2 -649 2665 2574 802 180 0 58 chr1 263406451 263406623 -18787041 + MER69A DNA AcHobo 13 174 -3 1938 144 3 0 chr1 263407769 263408061 -18785603 + AluJb SINE Alu 1 293 -19 183 80 0 0 chr1 263408065 263408090 -18785574 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2243 96 0 13 chr1 263408162 263408474 -18785190 + AluSg SINE Alu 1 308 -2 1521 229 87 10 chr1 263408532 263408947 -18784717 - L1ME3A LINE L1 -157 6013 5567 1924 105 59 0 chr1 263409008 263409314 -18784350 - L1MA5A LINE L1 -3 6294 5971 829 297 71 68 chr1 263409852 263410744 -18782920 + L1MEd LINE L1 108 1001 -5118 1810 218 120 75 chr1 263410745 263411428 -18782236 - HsTC2a DNA Tc2 -1 743 30 1314 178 93 22 chr1 263411434 263411755 -18781909 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr1 263412393 263412414 -18781250 + AT_rich Low_complexity Low_complexity 1 21 0 1981 182 30 83 chr1 263412833 263413031 -18780633 - MLT1D LTR MaLR 0 505 298 2143 115 0 3 chr1 263413031 263413344 -18780320 - AluSx SINE Alu 0 312 1 1981 182 30 83 chr1 263413344 263413678 -18779986 - MLT1D LTR MaLR -207 298 1 1565 173 7 17 chr1 263414135 263414435 -18779229 - AluJb SINE Alu -15 297 1 451 291 50 20 chr1 263414469 263414668 -18778996 - LTR67 LTR ERVL -19 538 334 357 137 32 24 chr1 263415881 263416005 -18777659 + (TAGA)n Simple_repeat Simple_repeat 3 127 0 238 231 26 26 chr1 263416549 263416627 -18777037 + (TG)n Simple_repeat Simple_repeat 1 78 0 249 311 94 19 chr1 263419090 263419196 -18774468 + L2 LINE L2 3140 3253 -19 400 164 0 0 chr1 263419358 263419419 -18774245 + AluS SINE Alu 2 62 -256 25 0 0 0 chr1 263420317 263420342 -18773322 + AT_rich Low_complexity Low_complexity 1 25 0 367 301 61 24 chr1 263420896 263421100 -18772564 + MIR SINE MIR 11 219 -43 647 277 118 18 chr1 263421172 263421504 -18772160 + MLT1J2 LTR MaLR 74 438 -12 282 167 53 175 chr1 263421589 263421703 -18771961 + MER102b DNA MER1_type 239 338 -3 2161 101 16 3 chr1 263421867 263422175 -18771489 + AluSx SINE Alu 1 312 0 240 257 29 100 chr1 263422193 263422333 -18771331 + MIR3 SINE MIR 39 168 -40 609 189 38 0 chr1 263422333 263422439 -18771225 - MLT1B LTR MaLR -2 388 279 399 233 25 17 chr1 263422437 263422557 -18771107 - MLT1B LTR MaLR -253 121 1 * 27 0 0 0 chr1 263422687 263422714 -18770950 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr1 263422729 263422768 -18770896 + AT_rich Low_complexity Low_complexity 1 39 0 3956 86 17 0 chr1 263422768 263423125 -18770539 - L1PB1 LINE L1 -1 6150 5780 204 40 0 0 chr1 263423125 263423150 -18770514 + (TA)n Simple_repeat Simple_repeat 2 26 0 3956 86 17 0 chr1 263423150 263423328 -18770336 - L1PB1 LINE L1 -371 5780 5606 318 342 63 0 chr1 263423420 263423578 -18770086 - L1M4 LINE L1 -1015 5131 4964 211 356 9 9 chr1 263424271 263424386 -18769278 + MIR SINE MIR 35 148 -83 2272 88 0 0 chr1 263424458 263424765 -18768899 - AluY SINE Alu -4 307 1 5628 37 0 0 chr1 263424793 263425461 -18768203 - L1PA3 LINE L1 -929 5217 4550 1567 29 0 0 chr1 263425460 263425694 -18767970 + L1PA3 LINE L1 5215 5448 -707 * 1348 32 0 0 chr1 263425717 263425909 -18767755 + L1PA3 LINE L1 5992 6183 0 6279 16 0 0 chr1 263425910 263426606 -18767058 + L1PA3 LINE L1 5447 6142 -13 3439 13 0 0 chr1 263426225 263426606 -18767058 + L1PA3 LINE L1 5762 6176 0 307 0 0 0 chr1 263426606 263426640 -18767024 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 182 294 165 18 chr1 263427306 263427476 -18766188 + L2 LINE L2 1731 1925 -1389 1162 133 0 0 chr1 263427483 263427663 -18766001 - L1MA4A LINE L1 -1 6302 6123 329 290 138 37 chr1 263428108 263428463 -18765201 + L1MEc LINE L1 92 482 -5914 1683 223 111 34 chr1 263428597 263429090 -18764574 - L1M4 LINE L1 -2397 3749 3189 1325 221 48 7 chr1 263429090 263429257 -18764407 - AluJb SINE Alu -11 301 116 212 31 62 0 chr1 263429257 263429289 -18764375 + T-rich Low_complexity Low_complexity 2 35 0 1325 221 48 7 chr1 263429289 263429410 -18764254 - AluJb SINE Alu -196 116 1 1683 223 111 34 chr1 263429410 263429589 -18764075 - L1M4 LINE L1 -2957 3189 3025 643 221 30 8 chr1 263429599 263429730 -18763934 - AluJb SINE Alu -178 134 1 417 186 167 0 chr1 263429736 263429838 -18763826 - L1M4 LINE L1 -3107 3039 2921 * 1249 249 133 0 chr1 263429826 263430203 -18763461 + L1MC4 LINE L1 7318 7744 -298 261 198 47 47 chr1 263430225 263430311 -18763353 + L1MC4 LINE L1 7816 7901 -141 854 223 48 31 chr1 263430404 263430694 -18762970 + L1ME1 LINE L1 5857 6177 -1 695 256 80 123 chr1 263430713 263431202 -18762462 + L1MC4 LINE L1 6693 7160 -801 271 271 18 60 chr1 263431816 263431982 -18761682 + L1ME4a LINE L1 5901 6059 -62 768 188 0 0 chr1 263432018 263432146 -18761518 - FLAM_C SINE Alu -5 128 1 336 83 0 0 chr1 263432165 263432213 -18761451 + (CA)n Simple_repeat Simple_repeat 1 48 0 2161 121 0 0 chr1 263432730 263433019 -18760645 - AluSq SINE Alu -24 289 1 425 129 0 0 chr1 263433233 263433295 -18760369 + FLAM SINE Alu 63 124 -19 1641 217 128 46 chr1 263434176 263434762 -18758902 - LTR27 LTR ERV1 0 636 3 1099 122 12 0 chr1 263434764 263434928 -18758736 - LTR27-int LTR ERV1 -1 7090 6925 217 146 0 24 chr1 263435667 263435708 -18757956 + (CAT)n Simple_repeat Simple_repeat 1 40 0 399 262 117 0 chr1 263436436 263436581 -18757083 - LTR67 LTR ERVL -1 556 395 403 356 0 26 chr1 263437342 263437536 -18756128 - MER5A DNA MER1_type 0 189 1 2522 191 47 8 chr1 263437623 263438131 -18755533 + MER74A LTR ERVL 1 528 -30 2397 226 62 79 chr1 263438168 263439008 -18754656 + MER21B LTR ERV1 1 826 -37 4590 121 37 12 chr1 263439042 263439959 -18753705 - L1PA14 LINE L1 -14 6158 5170 1973 131 41 3 chr1 263440454 263440745 -18752919 + AluSg SINE Alu 1 302 -8 395 268 7 63 chr1 263441297 263441439 -18752225 - L2 LINE L2 0 3313 3180 1010 212 163 23 chr1 263442195 263442501 -18751163 + MLT1G1 LTR MaLR 245 593 -2 279 234 84 48 chr1 263444038 263444170 -18749494 + L1ME4a LINE L1 5946 6088 -33 1958 144 0 14 chr1 263444170 263444484 -18749180 - AluSx SINE Alu 0 310 1 279 234 84 48 chr1 263444484 263444517 -18749147 + L1ME4a LINE L1 6088 6118 -3 385 260 50 60 chr1 263444842 263445042 -18748622 + L2 LINE L2 3103 3300 -13 2073 135 10 10 chr1 263445537 263445849 -18747815 + AluSx SINE Alu 1 312 0 1150 157 0 0 chr1 263445882 263446054 -18747610 + AluSg/x SINE Alu 137 308 -4 225 117 50 33 chr1 263446057 263446117 -18747547 + A-rich Low_complexity Low_complexity 5 65 0 4464 149 98 22 chr1 263446168 263447033 -18746631 + MER21A LTR ERV1 1 931 0 189 0 0 0 chr1 263447497 263447518 -18746146 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1559 175 52 4 chr1 263447521 263447673 -18745991 - AluJo SINE Alu -30 282 110 216 0 0 0 chr1 263447673 263447697 -18745967 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1559 175 52 4 chr1 263447697 263447813 -18745851 - AluJo SINE Alu -202 110 1 618 244 107 42 chr1 263447958 263448342 -18745322 - MLT1H1 LTR MaLR 0 555 128 1860 177 0 0 chr1 263449386 263449691 -18743973 + AluJb SINE Alu 1 305 -7 424 267 67 12 chr1 263449871 263449906 -18743758 + MER5A DNA MER1_type 9 41 -148 207 0 0 0 chr1 263449906 263449929 -18743735 + (CAG)n Simple_repeat Simple_repeat 1 23 0 424 267 67 12 chr1 263449929 263450058 -18743606 + MER5A DNA MER1_type 41 182 -7 243 311 61 15 chr1 263450097 263450229 -18743435 + MIR SINE MIR 8 145 -117 1463 163 0 4 chr1 263452863 263453090 -18740574 - AluJb SINE Alu -52 260 35 215 209 23 0 chr1 263453100 263453143 -18740521 + L2 LINE L2 3214 3257 -15 2587 61 0 0 chr1 263453280 263453591 -18740073 - AluY SINE Alu 0 311 1 924 161 8 144 chr1 263454247 263454490 -18739174 + AluJo SINE Alu 87 296 -16 269 330 52 78 chr1 263455166 263455396 -18738268 + L2 LINE L2 3049 3272 0 305 229 314 0 chr1 263456293 263456398 -18737266 + MER3 DNA MER1_type 1 138 -71 244 250 16 0 chr1 263457873 263457937 -18735727 - MER4C LTR ERV1 -251 214 150 2113 132 0 0 chr1 263458145 263458426 -18735238 + AluSg SINE Alu 1 281 -29 214 29 57 0 chr1 263458457 263458492 -18735172 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1363 171 98 103 chr1 263458518 263458985 -18734679 + MER4C LTR ERV1 1 465 0 2780 154 29 40 chr1 263459263 263459784 -18733880 + MLT2B2 LTR ERVL 1 515 0 380 294 0 0 chr1 263460655 263460781 -18732883 + A-rich Low_complexity Low_complexity 1 126 0 332 200 171 0 chr1 263460965 263461070 -18732594 - Charlie1 DNA MER1_type -1 2760 2638 1083 167 29 0 chr1 263461112 263461316 -18732348 - Charlie1 DNA MER1_type -1798 963 754 4804 163 85 21 chr1 263461319 263462570 -18731094 + L1MB3 LINE L1 1515 2685 -3722 2169 129 15 29 chr1 263462570 263462912 -18730752 - MER1B DNA MER1_type 0 337 1 4804 163 85 21 chr1 263462912 263463748 -18729916 + L1MB3 LINE L1 2685 6199 -208 413 141 0 39 chr1 263463779 263463857 -18729807 + L1MB3 LINE L1 6343 6417 -2 729 319 8 15 chr1 263463894 263464154 -18729510 - MIR SINE MIR 0 262 5 418 260 10 0 chr1 263464445 263464545 -18729119 + MIR SINE MIR 52 152 -110 594 248 19 13 chr1 263464920 263465077 -18728587 + Charlie2 DNA MER1_type 2 159 -2623 440 250 173 60 chr1 263465223 263465675 -18727989 + Charlie2 DNA MER1_type 1920 2422 -440 655 185 0 0 chr1 263465695 263465803 -18727861 - FLAM_C SINE Alu -24 119 12 413 149 40 13 chr1 263466045 263466116 -18727548 + (TG)n Simple_repeat Simple_repeat 1 69 -508 1763 155 52 9 chr1 263466116 263466445 -18727219 - MER61A LTR ERV1 0 343 1 413 149 40 13 chr1 263466445 263466607 -18727057 + (TG)n Simple_repeat Simple_repeat 69 577 0 1771 191 28 27 chr1 263467919 263468375 -18725289 + LTR2B LTR ERV1 1 490 0 1785 120 33 0 chr1 263468535 263468811 -18724853 + L1MA5A LINE L1 6006 6290 -7 21 36 0 0 chr1 263470390 263470418 -18723246 + AT_rich Low_complexity Low_complexity 1 28 0 1536 170 0 23 chr1 263470425 263470690 -18722974 + AluJo SINE Alu 39 297 -15 4255 126 26 0 chr1 263470728 263471347 -18722317 + MER41B LTR ERV1 1 635 0 21 0 0 0 chr1 263471593 263471614 -18722050 + AT_rich Low_complexity Low_complexity 1 21 0 617 61 73 6 chr1 263471618 263471782 -18721882 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 189 102 51 17 chr1 263471802 263471861 -18721803 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 565 151 17 21 chr1 263471861 263471923 -18721741 + (TA)n Simple_repeat Simple_repeat 1 62 -396 1877 138 51 0 chr1 263471923 263472199 -18721465 + AluSx SINE Alu 1 290 -22 565 151 17 21 chr1 263472199 263472321 -18721343 + (TA)n Simple_repeat Simple_repeat 62 458 0 397 141 0 0 chr1 263472336 263472400 -18721264 - AluJ/FRAM SINE Alu -17 285 222 325 307 81 32 chr1 263472673 263472956 -18720708 + L1MC4a LINE L1 4736 5032 -1114 2050 148 0 19 chr1 263473122 263473440 -18720224 + AluSx SINE Alu 1 312 0 651 318 70 50 chr1 263473473 263474133 -18719531 + L1MC4a LINE L1 5257 5929 -1879 24 41 0 20 chr1 263474311 263474344 -18719320 + AT_rich Low_complexity Low_complexity 1 34 -14 2283 67 0 18 chr1 263474344 263474627 -18719037 + AluY SINE Alu 1 278 -33 24 41 0 20 chr1 263474627 263474642 -18719022 + AT_rich Low_complexity Low_complexity 34 48 0 291 157 0 0 chr1 263474646 263474697 -18718967 + (CA)n Simple_repeat Simple_repeat 2 52 0 910 183 0 5 chr1 263474699 263474891 -18718773 - AluJb SINE Alu -22 290 7 189 309 73 18 chr1 263474935 263475045 -18718619 - MER5A DNA MER1_type -72 117 2 2562 65 0 3 chr1 263475193 263475499 -18718165 - AluY SINE Alu -6 305 1 194 224 0 61 chr1 263476623 263476672 -18716992 - L2 LINE L2 -1 3312 3267 271 329 24 0 chr1 263476726 263476811 -18716853 + L2 LINE L2 3227 3313 0 192 382 44 0 chr1 263476811 263476879 -18716785 - L2 LINE L2 -83 3189 3119 3900 198 45 33 chr1 263477115 263477944 -18715720 - MER21B LTR ERV1 -2 861 23 2846 164 98 25 chr1 263477952 263478255 -18715409 + MER7C DNA MER2_type 1 280 -2748 2267 97 3 31 chr1 263478255 263478576 -18715088 - AluSx SINE Alu 0 312 1 2846 164 98 25 chr1 263478576 263478833 -18714831 + MER7C DNA MER2_type 280 602 0 216 135 0 0 chr1 263478884 263478921 -18714743 + (TG)n Simple_repeat Simple_repeat 1 37 0 389 259 53 47 chr1 263479279 263479449 -18714215 + MIR SINE MIR 14 184 -78 211 208 0 0 chr1 263480698 263480746 -18712918 + MIR3 SINE MIR 108 155 -53 2198 102 10 13 chr1 263481056 263481361 -18712303 - AluSg SINE Alu -6 304 1 1124 142 6 0 chr1 263482886 263483055 -18710609 + FAM SINE Alu 2 171 -4 2316 174 37 2 chr1 263483224 263483632 -18710032 + MSTB LTR MaLR 1 422 -4 256 376 0 8 chr1 263484822 263484955 -18708709 + (CA)n Simple_repeat Simple_repeat 2 133 0 222 326 0 11 chr1 263485008 263485097 -18708567 + (CATA)n Simple_repeat Simple_repeat 2 89 0 311 279 61 54 chr1 263485233 263485380 -18708284 + MIR SINE MIR 56 203 -59 646 150 20 155 chr1 263485701 263485742 -18707922 - MER96B DNA MER1_type? -244 173 128 1821 167 0 10 chr1 263485742 263486035 -18707629 - AluJb SINE Alu -22 290 1 646 150 20 155 chr1 263486035 263486193 -18707471 - MER96B DNA MER1_type? -289 128 1 180 0 0 0 chr1 263486811 263486831 -18706833 + (T)n Simple_repeat Simple_repeat 1 20 0 985 192 146 4 chr1 263486891 263487151 -18706513 + L1MC3 LINE L1 7481 7777 -8 2648 127 28 9 chr1 263488785 263489145 -18704519 + MSTB1 LTR MaLR 1 372 -60 411 21 0 0 chr1 263489145 263489193 -18704471 + (TA)n Simple_repeat Simple_repeat 1 48 0 2648 127 28 9 chr1 263489193 263489256 -18704408 + MSTB1 LTR MaLR 372 432 0 368 217 7 80 chr1 263489348 263489486 -18704178 - L1MC5 LINE L1 -797 7164 7037 372 272 6 86 chr1 263489599 263489656 -18704008 - MIR SINE MIR -112 150 90 1748 169 0 46 chr1 263489656 263489981 -18703683 - AluSx SINE Alu -2 310 1 372 272 6 86 chr1 263489981 263490085 -18703579 - MIR SINE MIR -172 90 2 183 80 0 0 chr1 263490098 263490123 -18703541 + (T)n Simple_repeat Simple_repeat 1 25 0 2014 123 7 3 chr1 263490942 263491234 -18702430 + AluSx SINE Alu 2 294 -18 609 263 54 11 chr1 263491237 263491423 -18702241 - MIR SINE MIR -55 207 14 24 0 0 0 chr1 263491606 263491630 -18702034 + AT_rich Low_complexity Low_complexity 1 24 0 7809 206 103 58 chr1 263491987 263493685 -18699979 + L1MDa LINE L1 30 1650 -4890 2205 101 40 3 chr1 263493685 263493982 -18699682 - AluSx SINE Alu -4 308 1 7809 206 103 58 chr1 263493982 263495162 -18698502 + L1MDa LINE L1 1650 2775 -3765 2266 176 19 119 chr1 263495162 263495777 -18697887 + MLT2B3 LTR ERVL 1 554 0 7809 206 103 58 chr1 263495777 263496969 -18696695 + L1MDa LINE L1 2775 4280 -2260 1185 270 54 84 chr1 263497153 263497760 -18695904 + MER21B LTR ERV1 131 719 -144 4652 221 68 22 chr1 263497763 263499149 -18694515 + L1MDa LINE L1 4283 5733 -807 451 259 60 104 chr1 263499153 263499412 -18694252 + MLT1I LTR MaLR 89 331 -78 5095 144 160 23 chr1 263499412 263500536 -18693128 - MER52C LTR ERV1 0 1278 1 451 259 60 104 chr1 263500536 263500612 -18693052 + MLT1I LTR MaLR 331 409 0 276 286 68 20 chr1 263500934 263501081 -18692583 - L1M3 LINE L1 -665 5506 5353 666 214 0 0 chr1 263501785 263501902 -18691762 - FLAM_C SINE Alu -25 118 2 274 369 97 19 chr1 263501946 263502266 -18691398 + L2 LINE L2 2926 3270 -2 2067 123 14 0 chr1 263502732 263502861 -18690803 + AluSx SINE Alu 1 127 -183 2142 132 3 0 chr1 263502861 263503157 -18690507 + AluSx SINE Alu 1 297 -15 2067 123 14 0 chr1 263503157 263503333 -18690331 + AluSx SINE Alu 127 310 0 2276 133 3 27 chr1 263503496 263503871 -18689793 + L1PB3 LINE L1 5787 6152 -2 3476 153 58 18 chr1 263505321 263505868 -18687796 - L1MB3 LINE L1 0 6183 5602 2209 101 7 0 chr1 263505868 263506164 -18687500 - AluSx SINE Alu -14 298 1 3476 153 58 18 chr1 263506164 263506290 -18687374 - L1MB3 LINE L1 -581 5602 5483 2128 153 22 25 chr1 263507490 263507856 -18685808 + MLT1A1 LTR MaLR 1 365 0 197 276 102 10 chr1 263508140 263508238 -18685426 + L2 LINE L2 550 656 -2658 201 74 0 0 chr1 263508819 263508846 -18684818 + (CAGGG)n Simple_repeat Simple_repeat 3 29 0 1196 156 135 0 chr1 263508846 263509083 -18684581 - MER74A LTR ERVL -241 317 49 289 361 129 5 chr1 263509157 263509351 -18684313 + L2 LINE L2 2555 2772 -542 189 266 31 16 chr1 263509427 263509491 -18684173 + MIR3 SINE MIR 141 205 -3 215 241 0 19 chr1 263509583 263509637 -18684027 + CT-rich Low_complexity Low_complexity 2 54 0 446 258 101 44 chr1 263509778 263509937 -18683727 - MIR SINE MIR -15 247 80 2204 191 5 17 chr1 263510117 263510536 -18683128 - MLT2D LTR ERVL 0 414 1 2380 86 0 0 chr1 263511010 263511301 -18682363 + AluY SINE Alu 1 291 -20 859 270 116 65 chr1 263511546 263512020 -18681644 - MLT1J LTR MaLR -4 507 10 458 249 90 28 chr1 263512115 263512292 -18681372 + L1MC5 LINE L1 7724 7911 -50 2410 90 3 0 chr1 263512294 263512604 -18681060 + AluSq SINE Alu 1 311 -2 3135 129 8 17 chr1 263514261 263514782 -18678882 + L1MA4 LINE L1 5785 6300 0 1937 140 165 23 chr1 263515164 263515558 -18678106 - LTR47A LTR ERVL 0 452 3 767 162 18 36 chr1 263516581 263516748 -18676916 + MLT1A2 LTR MaLR 211 374 0 186 335 114 31 chr1 263517006 263517192 -18676472 - L2 LINE L2 -636 2678 2458 3205 211 25 9 chr1 263517192 263517833 -18675831 - MER82 DNA MER2_type 0 653 3 186 335 114 31 chr1 263517833 263517936 -18675728 - L2 LINE L2 -856 2458 2365 1501 171 88 55 chr1 263518073 263518362 -18675302 - MER44D DNA MER2_type -1882 609 331 2266 127 119 16 chr1 263518362 263518749 -18674915 - MSTA LTR MaLR 0 428 2 1501 171 88 55 chr1 263518749 263518787 -18674877 - MER44D DNA MER2_type -2160 331 1 210 276 0 17 chr1 263519142 263519200 -18674464 + GA-rich Low_complexity Low_complexity 3 59 0 1019 154 0 40 chr1 263519300 263519486 -18674178 - AluJo SINE Alu 0 312 133 378 0 0 0 chr1 263519486 263519528 -18674136 + (TA)n Simple_repeat Simple_repeat 2 43 0 1019 154 0 40 chr1 263519528 263519542 -18674122 - AluJo SINE Alu -179 133 120 264 193 6 0 chr1 263519580 263519639 -18674025 - Alu SINE Alu -261 41 1 1703 187 36 12 chr1 263519655 263519987 -18673677 + MER58B DNA MER1_type 1 340 -1 1993 92 58 20 chr1 263521537 263521830 -18671834 + AluSx SINE Alu 1 304 -8 2151 89 0 13 chr1 263522058 263522362 -18671302 - AluSg SINE Alu -10 300 1 229 188 0 129 chr1 263522387 263522488 -18671176 + L2 LINE L2 3224 3311 -2 1170 222 132 19 chr1 263523938 263524351 -18669313 + MLT1D LTR MaLR 1 484 -21 307 311 30 55 chr1 263524658 263524822 -18668842 + L2 LINE L2 3154 3313 0 244 306 128 45 chr1 263524836 263525218 -18668446 + L2 LINE L2 1962 2375 -939 185 71 0 0 chr1 263526313 263526341 -18667323 + L2 LINE L2 3286 3313 0 211 288 112 32 chr1 263526605 263526730 -18666934 - MIR3 SINE MIR -15 193 59 2001 100 7 7 chr1 263526899 263527180 -18666484 + AluSq SINE Alu 1 281 -32 324 0 0 0 chr1 263527180 263527216 -18666448 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 402 39 0 0 chr1 263527344 263527396 -18666268 + (CA)n Simple_repeat Simple_repeat 2 53 0 984 139 7 0 chr1 263528804 263528955 -18664709 + Tigger2 DNA MER2_type 1 152 -2566 1954 147 0 0 chr1 263528957 263529257 -18664407 + AluSx SINE Alu 1 300 -12 37 23 0 0 chr1 263529278 263529322 -18664342 + AT_rich Low_complexity Low_complexity 1 44 0 322 105 18 0 chr1 263529332 263529389 -18664275 + Tigger2 DNA MER2_type 136 193 -2525 * 731 192 53 13 chr1 263529380 263529531 -18664133 + Tigger2 DNA MER2_type 2561 2717 -1 197 412 35 26 chr1 263529538 263529652 -18664012 - L2 LINE L2 -56 3216 3102 411 306 211 25 chr1 263529876 263530426 -18663238 - L2 LINE L2 -433 2881 2230 264 312 193 0 chr1 263531390 263531499 -18662165 + MIR SINE MIR 2 131 -131 328 194 15 0 chr1 263531964 263532031 -18661633 + MER116 DNA Mariner 13 80 0 2290 177 18 0 chr1 263532293 263532682 -18660982 + MER57A LTR ERV1 8 403 0 1094 193 109 82 chr1 263533146 263533561 -18660103 + MER110A LTR ERV1 70 477 -10 298 296 33 59 chr1 263533587 263533739 -18659925 - L2 LINE L2 -54 3259 3112 242 274 32 0 chr1 263535214 263535276 -18658388 - MIR SINE MIR -179 83 20 584 120 46 35 chr1 263535716 263536003 -18657661 + (CA)n Simple_repeat Simple_repeat 1 290 0 558 105 42 28 chr1 263536019 263536314 -18657350 + (CA)n Simple_repeat Simple_repeat 1 299 0 471 111 35 35 chr1 263536356 263536528 -18657136 + (CA)n Simple_repeat Simple_repeat 1 172 0 682 109 32 24 chr1 263536587 263536838 -18656826 + (CA)n Simple_repeat Simple_repeat 1 253 0 1305 174 73 19 chr1 263537922 263538181 -18655483 + AluJo SINE Alu 10 282 -30 593 235 15 8 chr1 263538449 263538581 -18655083 + MER5A DNA MER1_type 55 187 -2 348 226 242 2 chr1 263538779 263538886 -18654778 - MIR SINE MIR -54 154 53 680 167 0 0 chr1 263539734 263539842 -18653822 - FLAM_A SINE Alu -34 108 1 3127 256 65 41 chr1 263539863 263539951 -18653713 - HAL1 LINE L1 -42 2465 2381 1288 168 88 71 chr1 263539951 263540248 -18653416 - AluJb SINE Alu 0 302 1 3127 256 65 41 chr1 263540248 263541517 -18652147 - HAL1 LINE L1 -126 2381 1075 2141 117 3 0 chr1 263542511 263542811 -18650853 - AluSx SINE Alu -11 301 1 2390 217 75 26 chr1 263543076 263543584 -18650080 + MLT1E2 LTR MaLR 1 472 -83 669 123 0 136 chr1 263543584 263543738 -18649926 + FLAM_A SINE Alu 1 133 0 2390 217 75 26 chr1 263543738 263543825 -18649839 + MLT1E2 LTR MaLR 472 553 -2 1588 74 5 0 chr1 263543827 263544030 -18649634 - LTR12 LTR ERV1 -23 691 488 258 221 106 71 chr1 263544030 263544143 -18649521 - LTR30 LTR ERV1 -73 721 544 4800 135 166 20 chr1 263544143 263545143 -18648521 - pTR5 LTR ERV1 -419 2019 741 198 176 0 0 chr1 263545673 263545724 -18647940 + CT-rich Low_complexity Low_complexity 2 52 0 252 0 0 0 chr1 263545724 263545752 -18647912 + (TG)n Simple_repeat Simple_repeat 1 28 0 350 241 235 25 chr1 263545769 263545931 -18647733 - L1ME3A LINE L1 -2 6168 5973 649 176 49 101 chr1 263545955 263546164 -18647500 - L1ME3A LINE L1 -168 6002 5829 2433 59 3 0 chr1 263546915 263547220 -18646444 - AluY SINE Alu -5 306 1 2547 210 21 12 chr1 263549117 263549679 -18643985 - L1MC3 LINE L1 -9 7776 7210 369 245 64 0 chr1 263549928 263550022 -18643642 + MLT1I LTR MaLR 299 398 -11 250 331 73 58 chr1 263550652 263550927 -18642737 + L2 LINE L2 2807 3085 -228 2354 142 29 3 chr1 263551001 263551381 -18642283 - MLT1B LTR MaLR 0 390 1 271 187 0 27 chr1 263551388 263551463 -18642201 + CT-rich Low_complexity Low_complexity 3 75 0 299 308 75 19 chr1 263551709 263551816 -18641848 + L2 LINE L2 3193 3305 -8 1637 142 42 35 chr1 263551961 263552249 -18641415 - AluJo SINE Alu -12 300 11 1561 175 21 3 chr1 263553294 263553585 -18640079 + AluJo SINE Alu 1 296 -16 215 261 43 0 chr1 263553834 263553903 -18639761 - L3 LINE CR1 -170 1407 1336 446 164 0 0 chr1 263554221 263554288 -18639376 + Tigger2 DNA MER2_type 1 67 -2651 * 2764 119 58 7 chr1 263554274 263554704 -18638960 + Tigger2 DNA MER2_type 2267 2718 0 580 280 72 19 chr1 263554885 263555149 -18638515 - LTR33 LTR ERVL -2 519 242 278 295 161 7 chr1 263555189 263555338 -18638326 - LTR33 LTR ERVL -345 176 5 252 248 46 83 chr1 263555367 263555476 -18638188 + L2 LINE L2 3160 3264 -8 338 324 38 7 chr1 263555794 263555929 -18637735 + MIR SINE MIR 31 169 -60 325 191 0 53 chr1 263556218 263556312 -18637352 + MER53 DNA DNA 19 107 -82 2255 87 3 0 chr1 263557576 263557874 -18635790 - AluSp SINE Alu -14 299 1 354 232 142 47 chr1 263557954 263558144 -18635520 + MIR SINE MIR 53 260 -2 305 321 90 25 chr1 263558255 263558532 -18635132 + LTR16B LTR ERVL 107 442 -8 2465 157 21 21 chr1 263558635 263559069 -18634595 + Tigger2a DNA MER2_type 1 434 0 372 258 20 23 chr1 263559417 263559555 -18634109 - MIR SINE MIR -67 141 8 341 234 37 19 chr1 263561314 263561443 -18632221 + LTR33A LTR ERVL 439 523 0 826 144 15 8 chr1 263561493 263561625 -18632039 - AluSq/x SINE Alu -179 133 1 231 401 33 6 chr1 263561758 263561940 -18631724 + MIR SINE MIR 6 192 -70 255 175 0 0 chr1 263562354 263562411 -18631253 + CT-rich Low_complexity Low_complexity 2 58 0 230 269 19 0 chr1 263564658 263564710 -18628954 - MLT1L LTR MaLR -415 200 148 999 171 0 12 chr1 263565130 263565294 -18628370 + FAM SINE Alu 6 167 -18 23 54 0 0 chr1 263565407 263565444 -18628220 + AT_rich Low_complexity Low_complexity 1 37 0 552 238 99 39 chr1 263567682 263567863 -18625801 + MLT1H1 LTR MaLR 357 548 -7 891 160 112 6 chr1 263569574 263569743 -18623921 + MLT1D LTR MaLR 319 505 0 575 282 89 43 chr1 263570114 263570486 -18623178 + Tigger8 DNA MER2_type 63 451 -215 473 272 69 65 chr1 263570533 263570750 -18622914 - MIR SINE MIR -10 252 35 256 326 155 21 chr1 263570778 263570965 -18622699 + L2 LINE L2 2818 3029 -284 224 277 48 0 chr1 263576292 263576375 -18617289 - L2 LINE L2 -2 3270 3184 781 166 0 43 chr1 263576857 263576996 -18616668 + FLAM_A SINE Alu 1 133 0 291 191 15 15 chr1 263578775 263578843 -18614821 - L2 LINE L2 -1 3271 3204 2186 106 0 0 chr1 263579088 263579380 -18614284 - AluSg1 SINE Alu -17 292 1 1707 132 54 51 chr1 263579520 263579816 -18613848 - AluJo SINE Alu -15 297 1 180 0 0 0 chr1 263582383 263582403 -18611261 + (T)n Simple_repeat Simple_repeat 1 20 0 29 28 0 0 chr1 263582616 263582652 -18611012 + GC_rich Low_complexity Low_complexity 1 36 0 25 90 0 0 chr1 263582773 263582840 -18610824 + GC_rich Low_complexity Low_complexity 1 67 0 189 74 0 0 chr1 263583221 263583248 -18610416 + (CGGG)n Simple_repeat Simple_repeat 2 28 0 26 74 0 0 chr1 263583302 263583356 -18610308 + GC_rich Low_complexity Low_complexity 1 54 0 644 251 163 9 chr1 263584057 263584272 -18609392 - MIR SINE MIR 0 262 15 919 238 93 28 chr1 263584340 263584628 -18609036 + MER69 DNA AcHobo 1 307 -919 265 302 28 88 chr1 263584628 263584810 -18608854 - MER96 DNA MER1_type? 0 175 5 1191 234 132 51 chr1 263584820 263585062 -18608602 + MER69 DNA AcHobo 303 524 -2002 1707 168 14 3 chr1 263585062 263585359 -18608305 + AluJb SINE Alu 6 305 -7 1191 234 132 51 chr1 263585359 263585586 -18608078 + MER69 DNA AcHobo 524 810 -1716 * 1262 189 94 9 chr1 263585580 263585898 -18607766 + MER69 DNA AcHobo 2181 2525 -1 427 264 79 7 chr1 263586345 263586485 -18607179 + L2 LINE L2 3149 3298 -15 489 193 18 9 chr1 263587038 263587147 -18606517 + MER69 DNA AcHobo 2416 2525 -1 22 35 0 0 chr1 263587706 263587735 -18605929 + AT_rich Low_complexity Low_complexity 1 29 0 512 279 177 14 chr1 263588032 263588315 -18605349 + MLT2E LTR ERVL 4 332 -296 266 234 149 0 chr1 263588458 263588552 -18605112 + MLT2E LTR ERVL 519 626 -2 391 318 21 42 chr1 263588925 263589114 -18604550 - MLT1J2 LTR MaLR 0 450 266 819 267 116 49 chr1 263589234 263589470 -18604194 + L1ME3A LINE L1 5694 5913 -257 2245 127 0 0 chr1 263589470 263589778 -18603886 + AluSg SINE Alu 1 308 -2 819 267 116 49 chr1 263589778 263589972 -18603692 + L1ME3A LINE L1 5913 6153 -17 1278 189 0 13 chr1 263591133 263591366 -18602298 + AluJb SINE Alu 81 310 -2 283 296 51 0 chr1 263591846 263591944 -18601720 - MIR SINE MIR -58 204 102 2244 104 0 3 chr1 263591982 263592280 -18601384 - AluSg SINE Alu -13 297 1 24 0 0 0 chr1 263593616 263593640 -18600024 + AT_rich Low_complexity Low_complexity 1 24 0 1440 149 3 53 chr1 263593914 263594048 -18599616 + L1MA9 LINE L1 6021 6160 -152 847 151 0 0 chr1 263594048 263594174 -18599490 + FLAM_C SINE Alu 2 127 -6 1440 149 3 53 chr1 263594174 263594341 -18599323 + L1MA9 LINE L1 6160 6307 -5 908 278 206 18 chr1 263594448 263594913 -18598751 - L2 LINE L2 0 3313 2937 3911 104 60 24 chr1 263594913 263595535 -18598129 + LTR9B LTR ERV1 1 644 0 908 278 206 18 chr1 263595535 263595743 -18597921 - L2 LINE L2 -376 2937 2770 2342 89 0 0 chr1 263595743 263596035 -18597629 + AluSc SINE Alu 1 292 -17 908 278 206 18 chr1 263596035 263596361 -18597303 - L2 LINE L2 -543 2770 2110 2053 85 48 20 chr1 263596711 263597005 -18596659 + AluSq SINE Alu 1 302 -11 21 0 0 0 chr1 263597228 263597249 -18596415 + AT_rich Low_complexity Low_complexity 1 21 0 2266 92 17 0 chr1 263597347 263597640 -18596024 - AluSq SINE Alu -11 302 5 188 220 20 20 chr1 263597863 263597913 -18595751 + MIR SINE MIR 91 140 -68 2293 141 44 6 chr1 263597913 263598276 -18595388 - MLT1B LTR MaLR -3 387 11 823 159 0 0 chr1 263598492 263598618 -18595046 - FLAM_C SINE Alu -17 126 1 2083 148 0 0 chr1 263598918 263599216 -18594448 - AluSx SINE Alu -14 298 1 231 254 0 0 chr1 263599411 263599466 -18594198 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 581 175 149 0 chr1 263600205 263600319 -18593345 + MLT1F1 LTR MaLR 437 567 0 218 242 15 0 chr1 263601892 263601958 -18591706 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 364 319 0 0 chr1 263601988 263602101 -18591563 - L2 LINE L2 -4 3309 3197 250 316 26 34 chr1 263602169 263602286 -18591378 + L2 LINE L2 3198 3313 0 1685 173 10 20 chr1 263602448 263602748 -18590916 + AluJo SINE Alu 3 299 -13 1029 286 48 74 chr1 263603030 263603622 -18590042 + L1 LINE L1 2659 3265 -2881 2502 86 0 0 chr1 263603622 263603923 -18589741 + AluSg SINE Alu 1 301 -9 1029 286 48 74 chr1 263603923 263604646 -18589018 + L1 LINE L1 3265 3940 -2206 1904 177 83 8 chr1 263604659 263605031 -18588633 - MER21B LTR ERV1 -3 860 461 1016 132 0 54 chr1 263605031 263605198 -18588466 + AluJo SINE Alu 1 158 -154 2421 161 44 0 chr1 263605238 263605628 -18588036 - MER21B LTR ERV1 -456 407 1 450 0 0 0 chr1 263605785 263605835 -18587829 + (TTTTA)n Simple_repeat Simple_repeat 3 52 0 38238 33 24 1 chr1 263605840 263611253 -18582411 - L1PA3 LINE L1 0 6155 617 761 35 0 0 chr1 263611247 263611334 -18582330 - L1PA3 LINE L1 -6048 98 12 * 414 0 0 0 chr1 263611362 263611408 -18582256 + (CA)n Simple_repeat Simple_repeat 2 47 0 983 117 6 0 chr1 263611408 263611570 -18582094 + (TA)n Simple_repeat Simple_repeat 2 164 0 776 296 28 38 chr1 263611581 263612004 -18581660 + L1 LINE L1 4018 4436 -1710 2363 148 55 16 chr1 263612021 263612405 -18581259 + MER57A LTR ERV1 5 403 0 3059 189 11 79 chr1 263612405 263612598 -18581066 + MER57A-int LTR ERV1 1 206 -7331 2267 109 0 3 chr1 263612598 263612902 -18580762 - AluSq SINE Alu -10 303 1 3059 189 11 79 chr1 263612902 263613402 -18580262 + MER57A-int LTR ERV1 206 647 -6890 829 115 16 193 chr1 263613442 263613562 -18580102 + MER57A-int LTR ERV1 649 788 -6749 1915 142 7 3 chr1 263613562 263613867 -18579797 + AluSx SINE Alu 1 306 0 829 115 16 193 chr1 263613867 263613915 -18579749 + MER57A-int LTR ERV1 788 843 -6694 1716 154 10 33 chr1 263613915 263614221 -18579443 + AluSx SINE Alu 10 308 -4 829 115 16 193 chr1 263614221 263614270 -18579394 + MER57A-int LTR ERV1 843 825 -6712 4501 84 29 0 chr1 263614270 263614853 -18578811 - MER4A LTR ERV1 0 600 1 829 115 16 193 chr1 263614853 263614876 -18578788 + MER57A-int LTR ERV1 824 849 -6688 490 271 13 32 chr1 263614970 263615125 -18578539 + MER57A-int LTR ERV1 841 992 -4131 2358 82 0 0 chr1 263615125 263615419 -18578245 - AluY SINE Alu -17 294 1 556 265 141 34 chr1 263615424 263615658 -18578006 + MER34C LTR ERV1 155 413 -172 346 214 86 79 chr1 263615658 263615877 -18577787 + MER57A-int LTR ERV1 1206 1982 -3729 * 379 250 12 85 chr1 263615867 263616031 -18577633 + LTR57-int LTR ERVL 1011 1162 -4181 * 1272 158 7 70 chr1 263615884 263616156 -18577508 + MER57A-int LTR ERV1 3086 3340 -2991 485 214 20 0 chr1 263616213 263616311 -18577353 + MER57A-int LTR ERV1 3354 3453 -2878 771 199 57 32 chr1 263616425 263616865 -18576799 + MER57-int LTR ERV1 1721 2207 -2916 5906 180 60 65 chr1 263616920 263617567 -18576097 + MER57-int LTR ERV1 3638 4287 -3120 1857 168 0 7 chr1 263617567 263617859 -18575805 - AluJo SINE Alu -22 290 1 5906 180 60 65 chr1 263617859 263618868 -18574796 + MER57-int LTR ERV1 4287 5820 -1587 1867 148 0 46 chr1 263619188 263619513 -18574151 - AluJo SINE Alu -2 310 1 754 181 0 94 chr1 263619530 263619701 -18573963 + MER57-int LTR ERV1 5825 5979 -1558 * 4788 172 20 20 chr1 263619693 263620559 -18573105 + MER57-int LTR ERV1 6146 7011 -526 235 188 47 0 chr1 263620564 263620628 -18573036 + L1MB4 LINE L1 6114 6180 0 558 355 93 17 chr1 263620748 263621156 -18572508 - ERVL LTR ERVL -4081 1683 1245 2001 138 3 3 chr1 263621817 263622115 -18571549 + AluJb SINE Alu 1 298 -14 4217 165 112 21 chr1 263622582 263623371 -18570293 + MER21B LTR ERV1 1 860 -3 1771 195 0 0 chr1 263623394 263623697 -18569967 + AluJb SINE Alu 1 303 -9 4192 83 40 0 chr1 263623792 263624346 -18569318 + L1PA11 LINE L1 5597 6172 -2 2178 96 0 3 chr1 263624899 263625190 -18568474 + AluSg SINE Alu 2 291 -19 21 0 0 0 chr1 263625730 263625751 -18567913 + AT_rich Low_complexity Low_complexity 1 21 0 766 161 27 0 chr1 263625929 263626041 -18567623 + FLAM_C SINE Alu 1 115 -18 30 0 0 0 chr1 263626041 263626071 -18567593 + AT_rich Low_complexity Low_complexity 1 30 0 3779 139 84 0 chr1 263626924 263627230 -18566434 + L1MC1 LINE L1 5662 5941 -392 243 0 0 0 chr1 263627230 263627257 -18566407 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 3779 139 84 0 chr1 263627257 263627570 -18566094 + L1MC1 LINE L1 5941 6333 0 2041 106 11 0 chr1 263627754 263628036 -18565628 + AluSq SINE Alu 7 291 -22 2434 72 13 0 chr1 263628042 263628347 -18565317 + AluSp SINE Alu 1 309 -4 659 87 0 78 chr1 263628357 263628472 -18565192 + MER50 LTR ERV1 499 604 -130 2296 137 18 18 chr1 263628785 263629122 -18564542 - MER1B DNA MER1_type 0 337 1 279 282 117 10 chr1 263630503 263630567 -18563097 - L2 LINE L2 -17 3296 3240 198 0 0 0 chr1 263630567 263630589 -18563075 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 279 282 117 10 chr1 263630589 263630627 -18563037 - L2 LINE L2 -73 3240 3183 396 125 0 0 chr1 263630654 263630718 -18562946 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 208 211 0 0 chr1 263630721 263630759 -18562905 + G-rich Low_complexity Low_complexity 1 38 0 2185 110 3 0 chr1 263631624 263631914 -18561750 + AluSx SINE Alu 1 291 -21 306 143 0 0 chr1 263632011 263632060 -18561604 + MADE1 DNA Mariner 32 80 0 21 36 0 0 chr1 263632201 263632229 -18561435 + AT_rich Low_complexity Low_complexity 1 28 0 553 164 52 0 chr1 263632235 263632351 -18561313 - L1MB4 LINE L1 -35 6145 6024 217 369 108 6 chr1 263632394 263632551 -18561113 - MIR SINE MIR -45 217 45 4059 98 14 25 chr1 263633286 263633846 -18559818 + MER41A LTR ERV1 1 554 0 227 233 81 35 chr1 263633857 263633943 -18559721 + L2 LINE L2 2426 2515 -799 250 273 0 100 chr1 263633965 263634039 -18559625 + MER94 DNA DNA 3 83 -51 1739 161 21 0 chr1 263634039 263634325 -18559339 + AluJb SINE Alu 1 292 -20 2098 127 3 0 chr1 263634327 263634635 -18559029 + AluSx SINE Alu 1 309 -3 250 273 0 100 chr1 263634635 263634667 -18558997 + MER94 DNA DNA 84 101 -33 448 145 81 65 chr1 263634860 263634984 -18558680 + MER4D LTR ERV1 778 903 0 741 209 63 29 chr1 263636105 263636311 -18557353 + LTR7 LTR ERV1 238 450 0 6881 216 34 47 chr1 263636311 263639199 -18554465 + HERVH LTR ERV1 1 2830 -4073 2256 143 0 66 chr1 263639199 263639269 -18554395 + HERVH LTR ERV1 3357 3430 -4283 2917 3 0 0 chr1 263639269 263639580 -18554084 + AluYa5 SINE Alu 1 311 0 2256 143 0 66 chr1 263639580 263639916 -18553748 + HERVH LTR ERV1 3430 3736 -3977 6769 105 1 2 chr1 263639926 263640855 -18552809 + HERVH LTR ERV1 3995 4910 -2803 1564 160 38 7 chr1 263640855 263641143 -18552521 + HERVH LTR ERV1 5747 6043 -1670 * 3688 100 14 18 chr1 263641113 263641672 -18551992 + HERVH LTR ERV1 7157 7713 0 1409 187 106 67 chr1 263641672 263642105 -18551559 + LTR7 LTR ERV1 1 450 0 758 177 0 54 chr1 263642162 263642292 -18551372 - FLAM_C SINE Alu -8 125 3 600 234 158 91 chr1 263642313 263642396 -18551268 + LTR56 LTR ERV1 12 88 -357 728 197 0 24 chr1 263642396 263642523 -18551141 + FLAM_C SINE Alu 4 127 -6 600 234 158 91 chr1 263642523 263642845 -18550819 + LTR56 LTR ERV1 88 444 -1 2264 244 134 38 chr1 263642958 263643635 -18550029 + L1ME3A LINE L1 4336 4947 -1223 2535 58 3 10 chr1 263643635 263643944 -18549720 + AluY SINE Alu 1 307 -4 2264 244 134 38 chr1 263643944 263644022 -18549642 + L1ME3A LINE L1 4947 5016 -1154 2239 105 3 0 chr1 263644022 263644317 -18549347 + AluSq SINE Alu 5 300 -13 2264 244 134 38 chr1 263644317 263644841 -18548823 + L1ME3A LINE L1 5016 5488 -682 2338 144 123 5 chr1 263644841 263645224 -18548440 - MSTA LTR MaLR 0 428 1 2264 244 134 38 chr1 263645224 263645586 -18548078 + L1ME3A LINE L1 5488 6132 -38 1955 127 21 3 chr1 263646201 263646484 -18547180 + AluSq SINE Alu 1 288 -25 2211 114 13 0 chr1 263646923 263647229 -18546435 - AluSx SINE Alu -2 310 1 23 0 0 0 chr1 263647259 263647282 -18546382 + AT_rich Low_complexity Low_complexity 1 23 0 2171 132 119 57 chr1 263647318 263647359 -18546305 - MSTA LTR MaLR 0 428 391 2115 125 0 3 chr1 263647359 263647648 -18546016 + AluSx SINE Alu 1 288 -24 2171 132 119 57 chr1 263647648 263648009 -18545655 - MSTA LTR MaLR -37 391 1 245 111 0 89 chr1 263648457 263648502 -18545162 + L2 LINE L2 3028 3068 -245 380 271 0 0 chr1 263649962 263650047 -18543617 + HsTC2 DNA Tc2 3 87 -1811 2195 212 160 71 chr1 263650082 263650827 -18542837 - MER21B LTR ERV1 -52 811 1 233 316 118 62 chr1 263651217 263651505 -18542159 + L2 LINE L2 2964 3267 -5 2119 124 9 0 chr1 263652058 263652373 -18541291 + L1MA5A LINE L1 5979 6296 -1 1953 143 14 7 chr1 263652404 263652697 -18540967 + AluSx SINE Alu 1 295 -17 528 78 22 44 chr1 263652737 263652827 -18540837 + MER74A LTR ERVL 1 88 -470 1060 243 18 18 chr1 263652829 263653055 -18540609 + MLT2B2 LTR ERVL 99 324 -191 584 224 24 61 chr1 263653319 263653484 -18540180 + MIR SINE MIR 89 247 -15 557 278 134 5 chr1 263653497 263653684 -18539980 + MIR SINE MIR 19 229 -33 2049 88 3 62 chr1 263653712 263654017 -18539647 + AluSq SINE Alu 1 287 -26 716 247 86 29 chr1 263654108 263654351 -18539313 - Cheshire DNA MER1_type -1490 930 674 1661 127 31 4 chr1 263654352 263654612 -18539052 + AluJb SINE Alu 1 267 -45 495 48 0 0 chr1 263654612 263654645 -18539019 + (GGGGA)n Simple_repeat Simple_repeat 1 95 0 495 48 0 0 chr1 263654645 263654707 -18538957 + (GGGGA)n Simple_repeat Simple_repeat 5 66 0 2440 93 0 0 chr1 263654731 263655092 -18538572 + AluSx SINE Alu 1 361 0 596 221 30 0 chr1 263655178 263655309 -18538355 - Cheshire DNA MER1_type -1769 651 517 * 1195 279 78 8 chr1 263655301 263655674 -18537990 - Cheshire DNA MER1_type -2021 399 1 323 271 12 0 chr1 263655720 263655805 -18537859 - HERV16 LTR ERVL -2623 2373 2288 4239 63 0 2 chr1 263655857 263656380 -18537284 - L1PA6 LINE L1 -37 6117 5596 3944 145 24 50 chr1 263856567 263856911 -18336753 + LTR8A LTR ERV1 3 354 -373 2575 27 3 0 chr1 263856911 263857211 -18336453 - AluYa5 SINE Alu -8 303 3 3944 145 24 50 chr1 263857211 263857610 -18336054 + LTR8A LTR ERV1 354 727 0 606 81 0 12 chr1 263858372 263858458 -18335206 + MER4A LTR ERV1 1 85 -579 1084 128 6 6 chr1 263858558 263858722 -18334942 - AluSq SINE Alu -149 164 1 1278 193 63 23 chr1 263859102 263859402 -18334262 - AluJo SINE Alu 0 312 1 410 319 35 0 chr1 263859591 263859732 -18333932 + MIR SINE MIR 47 192 -70 2412 73 0 0 chr1 263859838 263860141 -18333523 + AluSc SINE Alu 1 303 -6 237 71 0 0 chr1 263860312 263860340 -18333324 - U6 snRNA snRNA -79 28 1 1290 156 148 41 chr1 263861142 263861412 -18332252 + AluSc SINE Alu 1 299 0 192 327 118 0 chr1 263862457 263862567 -18331097 + MIR SINE MIR 70 192 -70 547 209 82 76 chr1 263862571 263862729 -18330935 + MER34 LTR ERV1 1 159 -383 214 336 168 0 chr1 263863401 263863446 -18330218 + MIR3 SINE MIR 14 50 -158 2104 113 3 0 chr1 263863446 263863747 -18329917 - AluSx SINE Alu -10 302 1 214 336 168 0 chr1 263863747 263863814 -18329850 + MIR3 SINE MIR 50 145 -63 185 107 54 36 chr1 263864797 263864853 -18328811 + GA-rich Low_complexity Low_complexity 6 62 0 2745 135 11 9 chr1 263864903 263865341 -18328323 - Tigger2 DNA MER2_type 0 2718 2280 369 123 77 15 chr1 263865339 263865404 -18328260 - Tigger2 DNA MER2_type -2649 69 1 * 369 281 62 34 chr1 263865924 263866102 -18327562 + MLT1K LTR MaLR 404 586 -2 502 239 51 8 chr1 263866262 263866379 -18327285 + MER115 DNA AcHobo 183 304 -389 2036 114 7 0 chr1 263868720 263869018 -18324646 + AluSx SINE Alu 1 300 -12 248 218 178 40 chr1 263869113 263869214 -18324450 - MIR SINE MIR -67 141 27 1509 166 41 37 chr1 263870049 263870344 -18323320 + AluJb SINE Alu 1 296 -16 1946 100 0 4 chr1 263871162 263871431 -18322233 + AluSq SINE Alu 1 268 -45 3454 60 2 13 chr1 263871432 263871885 -18321779 + LTR7 LTR ERV1 1 448 -2 412 58 19 0 chr1 263871900 263871952 -18321712 + LTR7 LTR ERV1 396 448 -2 21088 85 9 33 chr1 263871954 263875021 -18318643 + HERVH LTR ERV1 1 2995 -4718 929 122 27 0 chr1 263875000 263875147 -18318517 + HERVH LTR ERV1 3140 3290 -4423 * 3453 115 0 6 chr1 263875137 263875642 -18318022 + HERVH LTR ERV1 3492 3993 -3720 4475 133 5 1 chr1 263875644 263876304 -18317360 + HERVH LTR ERV1 4488 5149 -2564 1355 153 19 0 chr1 263876305 263876521 -18317143 + HERVH LTR ERV1 5600 5819 -1894 * 2513 80 56 13 chr1 263876519 263876895 -18316769 + HERVH LTR ERV1 7322 7713 0 3494 56 5 7 chr1 263876895 263877344 -18316320 + LTR7 LTR ERV1 1 448 -2 215 181 14 0 chr1 263877542 263877614 -18316050 + (CA)n Simple_repeat Simple_repeat 1 73 0 1707 151 0 58 chr1 263878066 263878391 -18315273 + AluJb SINE Alu 1 306 -6 369 0 0 0 chr1 263878527 263878568 -18315096 + (TG)n Simple_repeat Simple_repeat 2 42 0 862 139 0 0 chr1 263878998 263879127 -18314537 + FLAM_C SINE Alu 5 133 0 234 322 0 8 chr1 263880946 263881064 -18312600 + (CA)n Simple_repeat Simple_repeat 2 118 0 1424 100 17 38 chr1 263881596 263881835 -18311829 + L1PA14 LINE L1 5928 6161 0 21 0 0 0 chr1 263881860 263881881 -18311783 + AT_rich Low_complexity Low_complexity 1 21 0 264 355 11 0 chr1 263882023 263882116 -18311548 - MIR3 SINE MIR -11 197 104 2696 162 18 40 chr1 263882549 263882580 -18311084 + LTR45B LTR ERV1 2 32 -457 2268 82 7 0 chr1 263882580 263882874 -18310790 - AluSx SINE Alu -12 300 5 2696 162 18 40 chr1 263882874 263883341 -18310323 + LTR45B LTR ERV1 32 489 0 577 202 42 44 chr1 263883469 263883622 -18310042 - MLT1F LTR MaLR -5 585 398 493 154 0 0 chr1 263883632 263883710 -18309954 - AluS SINE Alu -233 79 2 1636 132 25 96 chr1 263884274 263884481 -18309183 - L1MA4 LINE L1 0 6300 6129 1617 191 30 0 chr1 263884481 263884784 -18308880 - AluJb SINE Alu 0 312 1 1636 132 25 96 chr1 263884784 263884940 -18308724 - L1MA4 LINE L1 -171 6129 5963 678 309 155 48 chr1 263884958 263885459 -18308205 + L1ME3A LINE L1 2267 2879 -3267 2534 150 11 27 chr1 263885459 263885899 -18307765 - Tigger2a DNA MER2_type 0 434 2 678 309 155 48 chr1 263885899 263886011 -18307653 + L1ME3A LINE L1 2879 2978 -3168 745 308 92 55 chr1 263886081 263886740 -18306924 + L1ME3A LINE L1 3755 4389 -1757 2084 129 3 0 chr1 263886740 263887043 -18306621 + AluSx SINE Alu 1 304 -8 745 308 92 55 chr1 263887043 263887637 -18306027 + L1ME3A LINE L1 4389 5070 -1076 516 243 205 38 chr1 263887776 263887986 -18305678 - MIR SINE MIR -5 257 13 499 269 71 62 chr1 263888015 263888443 -18305221 + L1ME3A LINE L1 5209 5647 -515 303 257 95 56 chr1 263888615 263888794 -18304870 + L1ME3A LINE L1 5777 5962 -208 1531 176 30 13 chr1 263888806 263889107 -18304557 - AluJo SINE Alu -6 306 1 24 0 0 0 chr1 263889593 263889617 -18304047 + AT_rich Low_complexity Low_complexity 1 24 0 1860 261 62 57 chr1 263889965 263890777 -18302887 + Charlie7 DNA MER1_type 346 1161 -1451 1035 69 8 0 chr1 263890786 263890917 -18302747 - AluSq/x SINE Alu -180 132 1 2413 54 0 0 chr1 263890933 263891229 -18302435 - AluY SINE Alu -14 297 2 1543 238 98 62 chr1 263891230 263891565 -18302099 + Charlie7 DNA MER1_type 1154 1476 -1136 1916 59 18 28 chr1 263891565 263891851 -18301813 + AluY SINE Alu 1 283 -28 231 36 0 0 chr1 263891858 263891886 -18301778 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1543 238 98 62 chr1 263891886 263892298 -18301366 + Charlie7 DNA MER1_type 1481 1936 -676 4669 157 38 8 chr1 263892299 263893253 -18300411 + L1MB8 LINE L1 5187 6169 -9 886 235 190 57 chr1 263893261 263893439 -18300225 + Charlie7 DNA MER1_type 1922 2075 -537 1582 172 17 0 chr1 263893439 263893729 -18299935 + AluJo SINE Alu 1 295 -17 1592 158 64 14 chr1 263893731 263894028 -18299636 + AluJo SINE Alu 1 312 0 886 235 190 57 chr1 263894028 263894425 -18299239 + Charlie7 DNA MER1_type 2075 2577 -35 210 118 0 0 chr1 263894822 263894856 -18298808 + (CA)n Simple_repeat Simple_repeat 2 35 0 386 269 53 57 chr1 263895443 263895633 -18298031 - MIR3 SINE MIR -4 204 11 382 289 58 26 chr1 263895680 263895800 -18297864 - MER112 DNA MER1_type 0 260 130 1867 197 21 0 chr1 263895800 263896135 -18297529 - MER2 DNA MER2_type 0 344 3 382 289 58 26 chr1 263896135 263896204 -18297460 - MER112 DNA MER1_type -130 130 65 351 44 0 0 chr1 263896215 263896260 -18297404 + (CA)n Simple_repeat Simple_repeat 2 46 0 234 247 55 41 chr1 263896283 263896356 -18297308 - MER112 DNA MER1_type -181 79 6 764 280 24 0 chr1 263897094 263897305 -18296359 - MER58A DNA MER1_type -5 219 4 209 281 0 18 chr1 263897308 263897365 -18296299 - MIR3 SINE MIR -49 159 104 270 297 238 0 chr1 263897527 263897628 -18296036 + MIR SINE MIR 28 152 -110 2225 106 0 0 chr1 263897725 263898026 -18295638 - AluSx SINE Alu -11 301 1 462 128 0 23 chr1 263898539 263898625 -18295039 - FLAM_A SINE Alu 0 142 59 936 257 73 59 chr1 263899267 263899676 -18293988 - LTR16A LTR ERVL -6 444 30 309 327 96 32 chr1 263899731 263899742 -18293922 - MIR SINE MIR -1 261 252 305 256 13 0 chr1 263899742 263899820 -18293844 + MER116 DNA Mariner 2 80 0 309 327 96 32 chr1 263899820 263900028 -18293636 - MIR SINE MIR -10 252 28 317 335 110 0 chr1 263901421 263901576 -18292088 + MIR SINE MIR 77 248 -14 225 319 139 12 chr1 263902892 263903058 -18290606 - MIR SINE MIR -41 221 35 1383 183 0 8 chr1 263903911 263904157 -18289507 + AluJo SINE Alu 44 287 -25 225 108 0 0 chr1 263904157 263904194 -18289470 + (GA)n Simple_repeat Simple_repeat 1 37 0 824 176 0 0 chr1 263904988 263905124 -18288540 + FRAM SINE Alu 39 174 -2 447 275 17 0 chr1 263905391 263905511 -18288153 - MIR SINE MIR -5 257 136 1159 230 33 41 chr1 263905511 263905822 -18287842 + L1M4 LINE L1 4080 4389 -1757 2434 196 34 19 chr1 263905822 263906287 -18287377 - MER70A LTR ERVL 0 472 1 1159 230 33 41 chr1 263906287 263906367 -18287297 + L1M4 LINE L1 4389 4468 -1678 2063 119 0 3 chr1 263906385 263906687 -18286977 + AluY SINE Alu 1 301 -10 346 287 8 70 chr1 263906687 263906816 -18286848 - MIR SINE MIR -140 122 2 2812 155 96 0 chr1 263906854 263907352 -18286312 - LTR64 LTR ERVK -11 547 2 269 240 58 58 chr1 263907414 263907518 -18286146 - MIR3 SINE MIR -19 189 86 300 299 11 0 chr1 263907596 263907683 -18285981 - MLT1I LTR MaLR 0 409 322 2239 109 0 0 chr1 263907683 263907997 -18285667 + AluSx SINE Alu 1 314 0 226 248 55 97 chr1 263907997 263908107 -18285557 - MLT1J1 LTR MaLR -85 361 256 597 182 83 0 chr1 263908165 263908286 -18285378 - MLT1J2 LTR MaLR -311 139 9 340 307 73 20 chr1 263908286 263908436 -18285228 - MIR SINE MIR -52 210 53 1742 141 3 96 chr1 263908448 263908761 -18284903 + AluSq SINE Alu 1 284 -29 237 33 0 0 chr1 263908761 263908791 -18284873 + (CATA)n Simple_repeat Simple_repeat 2 31 0 687 301 29 36 chr1 263908962 263909268 -18284396 + L1ME4a LINE L1 5522 5825 -296 2090 103 7 17 chr1 263909273 263909563 -18284101 + AluY SINE Alu 1 287 -24 1865 173 3 7 chr1 263909793 263910088 -18283576 - AluJo SINE Alu -18 294 1 39 22 0 0 chr1 263910246 263910292 -18283372 + AT_rich Low_complexity Low_complexity 1 46 0 1245 203 6 48 chr1 263910986 263911302 -18282362 + MER69 DNA AcHobo 1705 2007 -519 379 261 97 88 chr1 263911390 263911616 -18282048 + L1MC4a LINE L1 4269 4491 -1655 2163 92 0 7 chr1 263911616 263911909 -18281755 + AluSx SINE Alu 18 312 0 379 261 97 88 chr1 263911909 263912452 -18281212 + L1MC4a LINE L1 4491 5045 -1101 936 264 138 52 chr1 263912683 263913007 -18280657 + L1MC4a LINE L1 5268 5562 -2246 2186 111 0 0 chr1 263913007 263913296 -18280368 + AluSx SINE Alu 22 310 -2 936 264 138 52 chr1 263913296 263913592 -18280072 + L1MC4a LINE L1 5562 5942 -1866 2189 115 3 0 chr1 263913725 263914030 -18279634 - AluSx SINE Alu -6 306 1 185 108 27 0 chr1 263914354 263914391 -18279273 + (TTA)n Simple_repeat Simple_repeat 2 39 0 275 286 34 42 chr1 263914581 263914700 -18278964 + L2 LINE L2 3150 3267 -5 296 316 44 7 chr1 263915239 263915375 -18278289 + MER5A DNA MER1_type 27 167 -22 645 193 43 7 chr1 263915434 263915574 -18278090 - L1MC4 LINE L1 0 8042 7898 250 134 30 0 chr1 263915574 263915641 -18278023 + (TA)n Simple_repeat Simple_repeat 2 70 0 1999 115 123 39 chr1 263915641 263916023 -18277641 - LTR24C LTR ERV1 -1 634 221 262 158 0 40 chr1 263916107 263916183 -18277481 + CT-rich Low_complexity Low_complexity 4 76 0 977 122 0 43 chr1 263916187 263916351 -18277313 - AluJb SINE Alu 0 312 156 22 0 0 0 chr1 263916406 263916428 -18277236 + AT_rich Low_complexity Low_complexity 1 22 0 3699 163 34 6 chr1 263916432 263917114 -18276550 + L1MB3 LINE L1 5483 6183 0 299 89 11 132 chr1 263917495 263917685 -18275979 + (CACCAT)n Simple_repeat Simple_repeat 2 168 0 288 96 39 109 chr1 263917708 263917864 -18275800 + (CACCAT)n Simple_repeat Simple_repeat 2 146 0 262 239 177 9 chr1 263919225 263919265 -18274399 + MER112 DNA MER1_type 26 58 -202 231 114 0 0 chr1 263919265 263919300 -18274364 + (CA)n Simple_repeat Simple_repeat 2 36 0 262 239 177 9 chr1 263919300 263919372 -18274292 + MER112 DNA MER1_type 58 157 -103 1694 170 0 70 chr1 263919383 263919712 -18273952 - AluJo SINE Alu -6 306 1 1903 122 10 20 chr1 263919720 263920015 -18273649 - AluSx SINE Alu -20 292 1 272 208 28 14 chr1 263920016 263920088 -18273576 - L1ME3A LINE L1 -5 6165 6093 2145 103 11 3 chr1 263920133 263920415 -18273249 + AluSc SINE Alu 1 284 -25 651 208 7 14 chr1 263920422 263920566 -18273098 - L1MB7 LINE L1 -25 6159 6017 294 276 102 0 chr1 263920671 263920798 -18272866 - MIR SINE MIR -70 192 53 373 214 0 16 chr1 263921369 263921495 -18272169 + (TG)n Simple_repeat Simple_repeat 2 125 0 250 192 19 0 chr1 263921513 263921565 -18272099 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 471 203 6 16 chr1 263921565 263921747 -18271917 + (TG)n Simple_repeat Simple_repeat 1 180 0 2373 102 0 3 chr1 263923050 263923364 -18270300 + AluSp SINE Alu 1 313 0 345 273 0 0 chr1 263923540 263923617 -18270047 + MER81 DNA DNA 2 78 -36 310 255 43 28 chr1 263924477 263924618 -18269046 - MIR SINE MIR -48 214 72 649 229 86 0 chr1 263925198 263925373 -18268291 - MIR SINE MIR -6 256 67 648 217 0 0 chr1 263925452 263925567 -18268097 + FLAM_A SINE Alu 1 115 -18 1560 140 42 49 chr1 263925611 263925927 -18267737 + AluJo SINE Alu 2 315 0 1711 163 6 69 chr1 263925927 263926288 -18267376 - MER46B DNA MER2_type -23 213 1 690 161 0 16 chr1 263929197 263929321 -18264343 - MER61D LTR ERV1 -266 235 114 319 201 0 34 chr1 263929313 263929403 -18264261 - LTR28 LTR ERV1 -554 82 1 * 1040 274 81 28 chr1 263929475 263929943 -18263721 - MLT1J LTR MaLR -8 503 11 3100 111 12 43 chr1 263930035 263930378 -18263286 + LTR8A LTR ERV1 3 326 -401 2724 13 7 3 chr1 263930378 263930679 -18262985 - AluYa5 SINE Alu -8 303 2 3100 111 12 43 chr1 263930679 263930849 -18262815 + LTR8A LTR ERV1 326 500 -227 208 231 0 39 chr1 263930938 263931016 -18262648 + A-rich Low_complexity Low_complexity 3 77 0 216 188 24 47 chr1 263931094 263931179 -18262485 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 333 125 25 62 chr1 263931282 263931362 -18262302 + MER4A LTR ERV1 71 147 -517 743 86 6 38 chr1 263931388 263931562 -18262102 + MER4A LTR ERV1 252 478 -186 * 1968 133 90 9 chr1 263931561 263931906 -18261758 - LTR1B LTR ERV1 -453 373 1 924 111 6 62 chr1 263931978 263932140 -18261524 - L1PB3 LINE L1 -3 6151 5999 495 268 181 5 chr1 263932224 263932429 -18261235 - MIR SINE MIR -11 251 11 2214 106 0 0 chr1 263932499 263932801 -18260863 - AluSx SINE Alu 0 304 3 2307 97 3 13 chr1 263932965 263933273 -18260391 + AluSg SINE Alu 1 305 -5 735 311 28 27 chr1 263933458 263933821 -18259843 + L1ME LINE L1 5403 5756 -406 334 288 202 26 chr1 263934178 263934674 -18258990 + L1ME4a LINE L1 5329 5913 -208 1727 150 146 20 chr1 263934714 263935153 -18258511 - LTR54B LTR ERV1 -2 496 3 286 267 30 0 chr1 263935188 263935289 -18258375 + L1ME4a LINE L1 6018 6121 0 3190 167 162 109 chr1 263935543 263936404 -18257260 - LTR28 LTR ERV1 0 1020 101 2089 141 7 0 chr1 263936404 263936708 -18256956 + AluSx SINE Alu 1 306 -6 3190 167 162 109 chr1 263936708 263936815 -18256849 - LTR28 LTR ERV1 -919 101 1 867 226 96 29 chr1 263938023 263938175 -18255489 + MER58A DNA MER1_type 3 174 -2246 1679 160 193 11 chr1 263938175 263938537 -18255127 + MSTA LTR MaLR 1 428 0 867 226 96 29 chr1 263938537 263938592 -18255072 + MER58A DNA MER1_type 174 224 0 478 195 0 59 chr1 263939144 263939262 -18254402 + MER94 DNA DNA 4 114 -20 1069 169 6 6 chr1 263939424 263939596 -18254068 + FRAM SINE Alu 1 170 -6 249 270 0 63 chr1 263940138 263940249 -18253415 + MIR SINE MIR 133 236 -26 185 274 9 0 chr1 263940276 263940382 -18253282 + (TGG)n Simple_repeat Simple_repeat 1 107 0 258 213 0 0 chr1 263940403 263940450 -18253214 + L1ME LINE L1 1042 1088 -4982 2216 240 79 58 chr1 263940493 263940932 -18252732 + L1ME LINE L1 1128 1556 -4705 3963 58 8 2 chr1 263940932 263941419 -18252245 - LTR2B LTR ERV1 0 490 1 2216 240 79 58 chr1 263941419 263941589 -18252075 + L1ME LINE L1 1556 1721 -4540 1036 215 72 0 chr1 263941589 263941798 -18251866 + MER58A DNA MER1_type 1 224 0 2216 240 79 58 chr1 263941798 263941816 -18251848 + L1ME LINE L1 1721 1737 -4524 2330 110 0 0 chr1 263941816 263942117 -18251547 + AluSx SINE Alu 1 301 -11 2216 240 79 58 chr1 263942117 263942488 -18251176 + L1ME LINE L1 1737 2149 -4112 950 180 11 11 chr1 263942488 263942666 -18250998 + AluJo SINE Alu 122 299 -13 2634 237 12 14 chr1 263942673 263943323 -18250341 + L1ME LINE L1 2110 2758 -3322 711 206 103 14 chr1 263943324 263943470 -18250194 + AluSx SINE Alu 2 160 -152 957 128 0 26 chr1 263943534 263943690 -18249974 + AluSx SINE Alu 158 309 -1 930 264 80 47 chr1 263943692 263943907 -18249757 + L1ME4a LINE L1 5482 5688 -433 2056 137 0 25 chr1 263943907 263944221 -18249443 + AluJb SINE Alu 1 306 -6 930 264 80 47 chr1 263944221 263944430 -18249234 + L1ME4a LINE L1 5688 5920 -201 261 0 0 0 chr1 263944433 263944462 -18249202 + (TG)n Simple_repeat Simple_repeat 2 30 0 1338 180 20 118 chr1 263944486 263944846 -18248818 - MLT1A1 LTR MaLR 0 365 48 2274 100 0 3 chr1 263944846 263945145 -18248519 - AluSx SINE Alu -14 298 1 1338 180 20 118 chr1 263945145 263945189 -18248475 - MLT1A1 LTR MaLR -317 48 1 309 236 39 39 chr1 263945197 263945324 -18248340 + L1ME4a LINE L1 5994 6120 -1 328 145 13 13 chr1 263945595 263945671 -18247993 + GA-rich Low_complexity Low_complexity 2 77 0 575 147 8 23 chr1 263946404 263946533 -18247131 + CT-rich Low_complexity Low_complexity 3 129 0 1710 152 48 0 chr1 263946535 263946687 -18246977 - AluJb SINE Alu -29 283 111 354 45 0 0 chr1 263946687 263946731 -18246933 + (TG)n Simple_repeat Simple_repeat 1 44 0 1710 152 48 0 chr1 263946731 263946848 -18246816 - AluJb SINE Alu -201 111 1 321 211 28 0 chr1 263947278 263947349 -18246315 - L2 LINE L2 -228 3044 2972 2066 129 3 3 chr1 263948080 263948374 -18245290 + AluSx SINE Alu 1 294 -18 546 253 168 59 chr1 263948409 263948616 -18245048 + L2 LINE L2 2140 2323 -990 1834 222 114 24 chr1 263948616 263949160 -18244504 + MLT1G1 LTR MaLR 2 594 -1 546 253 168 59 chr1 263949160 263949994 -18243670 + L2 LINE L2 2323 3313 0 23 33 0 0 chr1 263950542 263950572 -18243092 + AT_rich Low_complexity Low_complexity 1 30 0 1951 133 18 0 chr1 263950578 263950894 -18242770 + AluSx SINE Alu 1 321 0 2330 104 0 3 chr1 263951065 263951363 -18242301 + AluSx SINE Alu 1 297 -15 199 314 33 58 chr1 263951430 263951551 -18242113 + MIR3 SINE MIR 40 157 -51 192 77 0 0 chr1 263951775 263951801 -18241863 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 199 276 172 37 chr1 263952338 263952472 -18241192 + MIR SINE MIR 111 262 0 1127 218 172 7 chr1 263952812 263953097 -18240567 + MLT1F LTR MaLR 211 542 0 2201 101 20 36 chr1 263953231 263953537 -18240127 - AluSx SINE Alu -11 301 1 412 229 28 63 chr1 263953652 263953812 -18239852 - MIR SINE MIR -58 150 37 1982 210 28 26 chr1 263953829 263954115 -18239549 - MLT1C LTR MaLR 0 467 177 1773 136 44 0 chr1 263954115 263954423 -18239241 - AluJo SINE Alu 0 320 1 1982 210 28 26 chr1 263954423 263954601 -18239063 - MLT1C LTR MaLR -290 177 1 321 297 17 8 chr1 263955611 263955729 -18237935 - L2 LINE L2 0 3313 3195 2480 90 0 0 chr1 263955917 263956228 -18237436 + AluSx SINE Alu 1 311 -1 2073 117 3 55 chr1 263956557 263956883 -18236781 + AluSx SINE Alu 1 309 -3 1270 192 39 0 chr1 263956883 263957117 -18236547 + MLT1C LTR MaLR 225 467 0 354 267 10 30 chr1 263957549 263957650 -18236014 + L1ME2 LINE L1 6001 6099 -65 300 135 0 68 chr1 263957650 263957724 -18235940 + L1MB7 LINE L1 6115 6183 -1 2055 102 0 0 chr1 263957764 263958055 -18235609 - AluSg SINE Alu 0 308 18 250 283 94 9 chr1 263958727 263958833 -18234831 + MIR SINE MIR 127 241 -21 690 285 37 33 chr1 263958920 263959134 -18234530 + MIR SINE MIR 35 249 -13 2105 132 7 0 chr1 263959211 263959507 -18234157 - AluSx SINE Alu -14 298 1 1440 246 92 80 chr1 263959603 263960177 -18233487 - L2 LINE L2 0 3313 2748 1922 102 4 11 chr1 263960177 263960470 -18233194 - AluSx SINE Alu 0 311 21 1440 246 92 80 chr1 263960470 263960788 -18232876 - L2 LINE L2 -565 2748 2435 1898 215 93 60 chr1 263960788 263961324 -18232340 + MLT2B3 LTR ERVL 1 554 0 1440 246 92 80 chr1 263961324 263961393 -18232271 - L2 LINE L2 -878 2435 2368 2026 99 3 11 chr1 263961393 263961706 -18231958 - AluSg SINE Alu 0 311 1 1440 246 92 80 chr1 263961706 263961913 -18231751 - L2 LINE L2 -945 2368 2127 3779 264 89 45 chr1 263961974 263963383 -18230281 + L1MEc LINE L1 377 1874 -4522 2260 140 35 30 chr1 263963383 263963789 -18229875 + L1MB3 LINE L1 5773 6180 -3 3779 264 89 45 chr1 263963789 263964066 -18229598 + L1MEc LINE L1 1874 2137 -4259 228 245 19 0 chr1 263964069 263964122 -18229542 + L1MC4a LINE L1 6626 6679 -1129 * 233 250 0 74 chr1 263964118 263964173 -18229491 + L1MA10 LINE L1 6235 6280 -54 2093 109 0 62 chr1 263964173 263964495 -18229169 + AluSx SINE Alu 1 302 -10 233 250 0 74 chr1 263964495 263964547 -18229117 + L1MA10 LINE L1 6280 6334 0 759 299 69 38 chr1 263964583 263964975 -18228689 + MLT1I LTR MaLR 2 405 -4 1291 157 5 0 chr1 263966694 263966898 -18226766 + AluJo SINE Alu 1 205 -107 23 0 0 0 chr1 263966921 263966944 -18226720 + AT_rich Low_complexity Low_complexity 1 23 0 315 277 120 58 chr1 263967408 263967650 -18226014 + L1M2 LINE L1 711 967 -5882 35 63 0 0 chr1 263967917 263967980 -18225684 + GC_rich Low_complexity Low_complexity 1 63 0 6082 6 15 16 chr1 263968287 263968972 -18224692 - LTR11 LTR ERV 0 684 1 1996 140 7 3 chr1 263969994 263970287 -18223377 + AluSx SINE Alu 1 294 -18 1819 157 0 43 chr1 263970574 263970899 -18222765 - AluJb SINE Alu -1 311 1 2214 188 22 16 chr1 263971590 263972043 -18221621 + MLT1C LTR MaLR 8 463 -4 2243 96 0 22 chr1 263972143 263972457 -18221207 - AluSg SINE Alu 0 310 4 221 242 328 8 chr1 263972723 263972851 -18220813 - MER5A DNA MER1_type 0 189 21 253 340 69 13 chr1 263972945 263973104 -18220560 + L2 LINE L2 2191 2358 -956 276 134 45 9 chr1 263973511 263973623 -18220041 + (TA)n Simple_repeat Simple_repeat 1 116 0 200 306 75 72 chr1 263974048 263974401 -18219263 + L2 LINE L2 530 886 -2428 2227 117 0 0 chr1 263974401 263974699 -18218965 - AluSx SINE Alu -14 298 1 194 337 218 15 chr1 263974763 263975024 -18218640 + L2 LINE L2 1073 1386 -1928 431 293 123 14 chr1 263975235 263975447 -18218217 + L2 LINE L2 1726 1960 -1354 215 290 28 91 chr1 263975470 263975646 -18218018 + L2 LINE L2 2289 2453 -861 3527 176 32 8 chr1 263977095 263977748 -18215916 - L1MD1 LINE L1 0 6242 5574 6716 203 96 48 chr1 263977761 263978351 -18215313 - L1MDa LINE L1 -3594 2946 2385 279 0 0 0 chr1 263978351 263978382 -18215282 + (TA)n Simple_repeat Simple_repeat 2 32 0 6716 203 96 48 chr1 263978382 263980264 -18213400 - L1MDa LINE L1 -4155 2385 593 2182 111 0 33 chr1 263980264 263980571 -18213093 - AluSq SINE Alu -16 297 1 6716 203 96 48 chr1 263980571 263980629 -18213035 - L1MDa LINE L1 -5947 593 539 2120 100 13 7 chr1 263980629 263980929 -18212735 - AluSx SINE Alu -6 306 5 6716 203 96 48 chr1 263980929 263981024 -18212640 - L1MDa LINE L1 -6001 539 9 689 249 38 42 chr1 263981294 263981559 -18212105 - L1MEd LINE L1 -4914 1205 942 1511 194 11 18 chr1 263981561 263981844 -18211820 - AluJo SINE Alu -31 281 1 23 54 0 0 chr1 263985394 263985431 -18208233 + AT_rich Low_complexity Low_complexity 1 37 0 2254 90 0 3 chr1 263986067 263986356 -18207308 + AluSq SINE Alu 1 288 -25 320 294 111 38 chr1 263986437 263986726 -18206938 + HAL1 LINE L1 8 317 -2190 1834 241 206 52 chr1 263986756 263987915 -18205749 + HAL1 LINE L1 445 1782 -725 303 252 78 26 chr1 263988099 263988214 -18205450 + L2 LINE L2 3193 3313 0 3454 34 0 0 chr1 263988378 263988765 -18204899 + L1PA3 LINE L1 5769 6155 0 1882 222 108 57 chr1 263989325 263990081 -18203583 - MER21B LTR ERV1 -62 801 7 223 200 62 0 chr1 263990128 263990193 -18203471 - L2 LINE L2 -42 3271 3203 224 308 131 23 chr1 263990571 263990785 -18202879 - L2 LINE L2 -807 2507 2271 246 252 152 103 chr1 263990935 263991092 -18202572 - L2 LINE L2 -1361 1953 1805 2142 79 43 0 chr1 263991092 263991369 -18202295 + AluSq SINE Alu 1 289 -24 246 252 152 103 chr1 263991369 263991501 -18202163 - L2 LINE L2 -1509 1805 1650 1420 169 102 0 chr1 263991513 263991768 -18201896 - AluJo SINE Alu -13 299 19 686 250 36 32 chr1 263992782 263993002 -18200662 + MIR SINE MIR 13 233 -29 644 228 35 7 chr1 263993003 263993148 -18200516 - MER3 DNA MER1_type -60 149 1 596 252 60 14 chr1 263993447 263993663 -18200001 + MIR SINE MIR 22 250 -12 270 203 85 0 chr1 263993691 263993750 -18199914 + L2 LINE L2 3249 3312 -1 248 231 115 39 chr1 263994881 263994985 -18198679 - MIR3 SINE MIR -1 207 96 23 0 0 0 chr1 263996120 263996143 -18197521 + AT_rich Low_complexity Low_complexity 1 23 0 314 282 150 91 chr1 263996218 263996558 -18197106 - L2 LINE L2 0 3272 2913 574 306 18 6 chr1 263996605 263996775 -18196889 - MER5B DNA MER1_type -6 172 1 796 298 123 61 chr1 263996782 263997945 -18195719 - L2 LINE L2 -568 2746 1512 257 257 64 18 chr1 263998272 263998381 -18195283 - L1MC4a LINE L1 -1862 5946 5833 1343 137 104 5 chr1 263998463 263998675 -18194989 + MER46A DNA MER2_type 3 235 -1 732 274 153 15 chr1 263998707 263998792 -18194872 - L1MC4a LINE L1 -2027 5781 5709 477 0 0 0 chr1 263998792 263998845 -18194819 + (TA)n Simple_repeat Simple_repeat 2 54 0 732 274 153 15 chr1 263998845 263999099 -18194565 - L1MC4a LINE L1 -2099 5709 5395 1728 162 47 3 chr1 263999623 263999920 -18193744 + AluSx SINE Alu 1 310 -2 954 114 0 40 chr1 264002893 264003042 -18190622 - FLAM_C SINE Alu 0 143 1 35 24 0 0 chr1 264003051 264003093 -18190571 + AT_rich Low_complexity Low_complexity 1 42 0 283 246 90 71 chr1 264003128 264003295 -18190369 - L1MC5 LINE L1 -57 7904 7731 2380 100 0 0 chr1 264003295 264003605 -18190059 + AluSg SINE Alu 1 310 0 283 246 90 71 chr1 264003605 264003648 -18190016 - L1MC5 LINE L1 -230 7731 7690 1555 157 66 18 chr1 264004147 264004433 -18189231 - AluJo SINE Alu -12 300 1 1800 153 0 27 chr1 264006604 264006769 -18186895 - AluJo SINE Alu -19 293 125 207 0 0 0 chr1 264006769 264006792 -18186872 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2352 89 0 0 chr1 264006792 264007073 -18186591 - AluSg SINE Alu -29 281 1 1800 153 0 27 chr1 264007073 264007207 -18186457 - AluJo SINE Alu -185 127 1 2171 82 50 0 chr1 264008399 264008681 -18184983 - AluSq SINE Alu -7 306 11 1826 165 14 7 chr1 264008905 264009202 -18184462 - AluJo SINE Alu -13 299 1 241 300 140 0 chr1 264009335 264009485 -18184179 - L1ME LINE L1 -419 5702 5532 652 231 159 14 chr1 264010257 264010547 -18183117 - L1MC4a LINE L1 -1750 6058 5727 316 290 117 61 chr1 264010727 264011243 -18182421 + L1M4 LINE L1 4417 5002 -1144 1919 145 3 3 chr1 264011243 264011533 -18182131 + AluJb SINE Alu 1 290 -22 316 290 117 61 chr1 264011533 264011874 -18181790 + L1M4 LINE L1 5002 5322 -824 233 262 39 29 chr1 264011897 264012000 -18181664 + L1M LINE L1 5307 5410 -711 1655 133 9 0 chr1 264012032 264012265 -18181399 + AluJb SINE Alu 58 292 -20 2282 240 82 3 chr1 264012328 264013048 -18180616 - L1MDb LINE L1 -2896 3644 2868 3365 219 180 29 chr1 264013285 264013443 -18180221 - L1MDb LINE L1 -3671 2869 2736 2065 108 33 30 chr1 264013443 264013748 -18179916 - AluSx SINE Alu -6 306 1 3365 219 180 29 chr1 264013748 264013968 -18179696 - L1MDb LINE L1 -3804 2736 2551 2030 117 3 26 chr1 264013968 264013979 -18179685 - AluSx SINE Alu -11 301 291 180 0 0 0 chr1 264013979 264013999 -18179665 + (TGG)n Simple_repeat Simple_repeat 3 22 0 2030 117 3 26 chr1 264013999 264014294 -18179370 - AluSx SINE Alu -21 291 2 3365 219 180 29 chr1 264014294 264015093 -18178571 - L1MDb LINE L1 -3989 2551 1874 2432 90 3 0 chr1 264015093 264015394 -18178270 - AluSg SINE Alu -8 302 1 3365 219 180 29 chr1 264015394 264015974 -18177690 - L1MDb LINE L1 -4666 1874 916 296 281 74 69 chr1 264016552 264016769 -18176895 - L1MDb LINE L1 -6309 231 14 2555 79 0 0 chr1 264016973 264017277 -18176387 - AluSx SINE Alu -8 304 1 2264 144 0 6 chr1 264018317 264018663 -18175001 - MER2 DNA MER2_type 0 344 1 25 0 0 0 chr1 264023584 264023609 -18170055 + AT_rich Low_complexity Low_complexity 1 25 0 2406 57 17 20 chr1 264024122 264024422 -18169242 + AluSc SINE Alu 1 299 -10 1919 141 13 29 chr1 264024828 264025141 -18168523 - AluJo SINE Alu -4 308 1 218 377 55 34 chr1 264026035 264026181 -18167483 - L2 LINE L2 -540 2774 2626 2157 136 0 0 chr1 264026243 264026553 -18167111 + AluSp SINE Alu 1 310 -3 2464 44 34 10 chr1 264027095 264027391 -18166273 + AluY SINE Alu 1 303 -8 990 116 64 12 chr1 264028040 264028212 -18165452 + MER21A LTR ERV1 25 205 -726 2123 147 102 49 chr1 264028228 264028322 -18165342 + MER21A LTR ERV1 459 547 -384 2134 84 0 87 chr1 264028322 264028677 -18164987 - AluSx SINE Alu 0 328 1 2123 147 102 49 chr1 264028677 264029030 -18164634 + MER21A LTR ERV1 547 931 0 236 299 0 15 chr1 264029104 264029171 -18164493 + L1M4 LINE L1 2523 2588 -3558 982 173 0 58 chr1 264029201 264029409 -18164255 - MER3 DNA MER1_type -7 202 7 768 225 49 28 chr1 264029426 264029685 -18163979 + L1M4 LINE L1 2609 2876 -3270 2567 43 0 3 chr1 264029685 264029988 -18163676 + AluY SINE Alu 1 302 -9 768 225 49 28 chr1 264029988 264030013 -18163651 + L1M4 LINE L1 2876 2899 -3247 378 62 0 0 chr1 264030022 264030070 -18163594 + L1MB3 LINE L1 6079 6126 -57 1938 152 0 3 chr1 264030132 264030421 -18163243 + AluSx SINE Alu 1 288 -24 26 30 0 0 chr1 264030421 264030454 -18163210 + AT_rich Low_complexity Low_complexity 1 33 0 241 298 24 0 chr1 264030509 264030593 -18163071 - L1P LINE L1 -2037 4109 4024 1433 141 0 0 chr1 264030598 264030821 -18162843 - AluSg/x SINE Alu 0 305 83 576 214 158 36 chr1 264030907 264031267 -18162397 + L1M4 LINE L1 2900 3303 -2843 333 242 86 70 chr1 264031340 264031526 -18162138 + HAL1 LINE L1 47 235 -2272 1787 163 7 23 chr1 264031566 264031872 -18161792 + AluJo SINE Alu 1 301 -11 364 257 63 127 chr1 264031920 264032298 -18161366 + MLT1G1 LTR MaLR 8 361 -234 1486 196 85 13 chr1 264032392 264032709 -18160955 - MER2 DNA MER2_type -5 340 1 261 161 0 36 chr1 264032711 264032767 -18160897 + MLT1G1 LTR MaLR 480 533 -9 2679 237 103 100 chr1 264032767 264034213 -18159451 + HAL1 LINE L1 376 1831 -676 384 77 0 0 chr1 264034213 264034265 -18159399 + (TA)n Simple_repeat Simple_repeat 2 53 0 2679 237 103 100 chr1 264034265 264034944 -18158720 + HAL1 LINE L1 1831 2507 0 2079 253 63 79 chr1 264035033 264035073 -18158591 + HAL1 LINE L1 756 795 -1712 333 0 0 0 chr1 264035073 264035110 -18158554 + (CA)n Simple_repeat Simple_repeat 2 38 0 2079 253 63 79 chr1 264035110 264036277 -18157387 + HAL1 LINE L1 795 1944 -563 554 256 106 26 chr1 264036284 264036557 -18157107 + HAL1 LINE L1 2068 2362 -145 21 0 0 0 chr1 264036653 264036674 -18156990 + AT_rich Low_complexity Low_complexity 1 21 0 196 340 35 43 chr1 264037410 264037448 -18156216 + MIR SINE MIR 113 150 -112 2560 53 0 0 chr1 264037448 264037747 -18155917 + AluSg SINE Alu 1 299 -11 196 340 35 43 chr1 264037747 264037849 -18155815 + MIR SINE MIR 150 252 -10 22 0 0 0 chr1 264038696 264038718 -18154946 + GC_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr1 264038747 264038801 -18154863 + GC_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr1 264039074 264039110 -18154554 + GC_rich Low_complexity Low_complexity 1 36 0 265 167 20 98 chr1 264039134 264039236 -18154428 + G-rich Low_complexity Low_complexity 4 97 0 2450 69 0 25 chr1 264040263 264040580 -18153084 + AluY SINE Alu 1 309 -2 384 216 69 25 chr1 264041226 264041345 -18152319 - MLT1H LTR MaLR -3 612 445 2396 156 31 10 chr1 264041386 264041803 -18151861 + MSTB LTR MaLR 1 426 0 476 245 66 13 chr1 264041900 264042051 -18151613 - MLT1H LTR MaLR -379 170 12 230 0 33 0 chr1 264042055 264042085 -18151579 + (CA)n Simple_repeat Simple_repeat 2 32 0 1545 143 36 0 chr1 264042094 264042317 -18151347 + AluSx SINE Alu 34 264 -48 2189 103 7 0 chr1 264042938 264043228 -18150436 - AluSx SINE Alu -20 292 1 1975 157 12 30 chr1 264043433 264043765 -18149899 + MER1B DNA MER1_type 14 339 0 704 267 195 54 chr1 264044221 264044626 -18149038 + MLT1K LTR MaLR 125 586 -2 1170 192 65 46 chr1 264044631 264044892 -18148772 + MSTB LTR MaLR 156 421 -5 2032 126 0 0 chr1 264045459 264045768 -18147896 - AluSx SINE Alu 0 315 7 485 241 42 84 chr1 264046025 264046216 -18147448 - MIR SINE MIR -50 212 30 581 287 129 5 chr1 264046310 264046512 -18147152 + MIR SINE MIR 36 262 0 1689 171 4 4 chr1 264046739 264047014 -18146650 + AluJo SINE Alu 2 276 -36 2104 123 0 22 chr1 264047037 264047355 -18146309 + AluSx SINE Alu 1 311 -1 298 252 72 27 chr1 264047469 264047522 -18146142 + LTR37B LTR ERV1 347 396 -72 2340 83 3 0 chr1 264047522 264047811 -18145853 + AluSp SINE Alu 1 290 -23 298 252 72 27 chr1 264047811 264047867 -18145797 + LTR37B LTR ERV1 396 461 -7 1506 192 72 23 chr1 264047867 264048216 -18145448 - MLT1B LTR MaLR 0 390 25 1129 213 9 0 chr1 264048966 264049182 -18144482 + MER20 DNA MER1_type 2 219 0 6261 194 12 40 chr1 264049269 264049925 -18143739 - L1MB3 LINE L1 0 6183 5510 1891 164 20 0 chr1 264049925 264050218 -18143446 - AluJb SINE Alu -13 299 1 6261 194 12 40 chr1 264050218 264051333 -18142331 - L1MB3 LINE L1 -673 5510 4500 763 157 25 0 chr1 264051333 264051454 -18142210 - FLAM_A SINE Alu -9 124 1 6261 194 12 40 chr1 264051454 264052096 -18141568 - L1MB3 LINE L1 -1683 4500 3842 588 191 0 26 chr1 264052099 264052214 -18141450 - AluJo SINE Alu -18 294 183 920 158 0 0 chr1 264052215 264052348 -18141316 - AluJo SINE Alu -179 133 1 1273 266 48 16 chr1 264052349 264052785 -18140879 - L1MB3 LINE L1 -2297 3849 3400 * 15241 189 23 9 chr1 264052782 264057401 -18136263 - L1PBa LINE L1 -846 6016 1331 2031 107 22 41 chr1 264057479 264057796 -18135868 - AluSx SINE Alu -1 311 1 324 70 0 0 chr1 264057798 264057841 -18135823 + MER77 LTR ERV1 479 521 -84 1946 156 6 35 chr1 264057841 264058156 -18135508 + AluJo SINE Alu 1 306 -6 357 250 0 21 chr1 264058187 264058283 -18135381 + MER77 LTR ERV1 508 601 -4 2303 116 0 0 chr1 264058556 264058867 -18134797 - AluY SINE Alu 0 311 1 276 266 47 55 chr1 264059406 264059534 -18134130 + L3 LINE CR1 1335 1461 -116 527 300 30 30 chr1 264059572 264059772 -18133892 + MIR SINE MIR 13 212 -50 2363 107 0 0 chr1 264059882 264060192 -18133472 + AluSg SINE Alu 1 310 0 2024 172 74 12 chr1 264060228 264060635 -18133029 + MSTB1 LTR MaLR 1 432 0 238 299 146 7 chr1 264061555 264061699 -18131965 - L2 LINE L2 -262 3051 2888 24 0 0 0 chr1 264062119 264062143 -18131521 + AT_rich Low_complexity Low_complexity 1 24 0 2184 126 121 21 chr1 264062143 264062532 -18131132 + MSTA LTR MaLR 1 428 0 3002 115 2 16 chr1 264062535 264062980 -18130684 - L1PB3 LINE L1 0 6154 5716 1693 161 25 14 chr1 264063174 264063459 -18130205 + AluJo SINE Alu 8 295 -17 1736 180 7 10 chr1 264063553 264063847 -18129817 - AluJb SINE Alu -11 301 9 2181 128 0 0 chr1 264063912 264064208 -18129456 - AluSq SINE Alu -13 300 5 2382 82 3 0 chr1 264064278 264064570 -18129094 + AluSp SINE Alu 1 293 -20 1937 154 85 64 chr1 264064646 264065069 -18128595 - MSTB1 LTR MaLR 0 432 1 233 261 114 11 chr1 264065246 264065334 -18128330 - MIR3 SINE MIR -1 207 111 2000 152 0 10 chr1 264065550 264065847 -18127817 + AluJb SINE Alu 1 294 -18 467 294 152 5 chr1 264065865 264066062 -18127602 - L3 LINE CR1 -663 914 689 29 0 0 0 chr1 264066154 264066183 -18127481 + AT_rich Low_complexity Low_complexity 1 29 0 186 167 69 83 chr1 264066261 264066333 -18127331 + MER5B DNA MER1_type 78 148 -30 622 101 0 28 chr1 264066501 264066610 -18127054 - L1MA4 LINE L1 0 6300 6195 625 367 83 17 chr1 264066625 264067034 -18126630 - L3 LINE CR1 -1028 549 114 2260 121 0 31 chr1 264067881 264068203 -18125461 - AluSx SINE Alu 0 312 1 2784 121 79 131 chr1 264068483 264069221 -18124443 - LTR34 LTR ERV1 0 699 1 646 188 0 8 chr1 264070108 264070225 -18123439 + FLAM_A SINE Alu 1 116 -17 914 131 23 0 chr1 264070241 264070371 -18123293 - AluJb SINE Alu -179 133 1 912 296 134 10 chr1 264070868 264071354 -18122310 + MER69 DNA AcHobo 14 559 -667 2398 97 0 3 chr1 264071524 264071833 -18121831 - AluSg SINE Alu -2 308 1 2226 118 3 3 chr1 264071857 264072161 -18121503 + AluSx SINE Alu 1 304 -8 2138 148 68 52 chr1 264072421 264072648 -18121016 - MSTB1 LTR MaLR 0 432 193 2152 112 35 0 chr1 264072648 264072933 -18120731 + AluSx SINE Alu 1 295 -17 2138 148 68 52 chr1 264072933 264073130 -18120534 - MSTB1 LTR MaLR -239 193 1 1750 205 50 0 chr1 264073355 264073696 -18119968 + MLT1A1 LTR MaLR 8 365 0 379 305 93 60 chr1 264074281 264074318 -18119346 - L1ME4a LINE L1 -11 6110 6076 2350 102 3 0 chr1 264074318 264074621 -18119043 + AluSp SINE Alu 1 304 -9 379 305 93 60 chr1 264074621 264074729 -18118935 - L1ME4a LINE L1 -45 6076 5973 2208 119 7 7 chr1 264074729 264075066 -18118598 - AluSx SINE Alu 0 312 1 1880 134 16 44 chr1 264075068 264075389 -18118275 - AluJo SINE Alu 0 312 1 379 305 93 60 chr1 264075389 264075819 -18117845 - L1ME4a LINE L1 -148 5973 5512 277 291 55 24 chr1 264076462 264076589 -18117075 + L2 LINE L2 2756 2886 -428 285 119 0 85 chr1 264078341 264078400 -18115264 - Alu SINE Alu -3 299 246 203 295 16 0 chr1 264079039 264079100 -18114564 + MIR3 SINE MIR 140 201 -7 375 23 0 0 chr1 264079117 264079161 -18114503 + (TA)n Simple_repeat Simple_repeat 1 44 0 1878 171 10 0 chr1 264079175 264079484 -18114180 - AluJb SINE Alu 0 312 1 476 66 0 0 chr1 264079662 264079723 -18113941 + U6 snRNA snRNA 1 61 -46 208 135 81 0 chr1 264079841 264079878 -18113786 + L2 LINE L2 3253 3292 -21 1330 133 0 90 chr1 264079879 264080053 -18113611 - AluJb SINE Alu -20 292 143 2484 89 0 6 chr1 264080053 264080366 -18113298 - AluSq SINE Alu -2 311 1 1330 133 0 90 chr1 264080366 264080424 -18113240 - AluJb SINE Alu -169 143 81 1429 253 58 25 chr1 264080496 264080982 -18112682 + MLT1J LTR MaLR 6 507 -4 584 288 109 6 chr1 264081078 264081280 -18112384 - MIR SINE MIR -1 261 41 224 284 27 27 chr1 264081283 264081357 -18112307 + L2 LINE L2 3196 3269 -44 667 146 0 0 chr1 264081908 264082011 -18111653 + FRAM SINE Alu 34 136 -40 2018 216 49 13 chr1 264082391 264082924 -18110740 - MER74A LTR ERVL 0 558 7 1964 138 3 3 chr1 264082924 264083207 -18110457 + AluSq SINE Alu 1 283 -30 387 0 0 0 chr1 264083223 264083266 -18110398 + (CA)n Simple_repeat Simple_repeat 2 44 0 2343 101 10 3 chr1 264083639 264083947 -18109717 + AluSq SINE Alu 1 310 -3 894 207 61 10 chr1 264084113 264084311 -18109353 - MLT1A2 LTR MaLR 0 374 167 1603 193 23 7 chr1 264084313 264084613 -18109051 - AluJo SINE Alu -7 305 1 733 215 7 7 chr1 264084724 264084873 -18108791 - MLT1A2 LTR MaLR -216 149 1 2011 108 24 10 chr1 264085009 264085297 -18108367 - AluSc SINE Alu 0 309 18 210 238 0 0 chr1 264086168 264086210 -18107454 + (CA)n Simple_repeat Simple_repeat 1 42 0 1944 195 26 23 chr1 264086593 264086982 -18106682 + MLT1B LTR MaLR 1 390 0 1608 191 20 7 chr1 264087778 264088077 -18105587 - AluJb SINE Alu -9 303 1 604 259 20 20 chr1 264088157 264088304 -18105360 + MIR SINE MIR 37 183 -79 2537 66 13 0 chr1 264088319 264088621 -18105043 + AluSp SINE Alu 5 310 -3 243 234 0 31 chr1 264088881 264088945 -18104719 + CT-rich Low_complexity Low_complexity 4 65 0 2499 98 0 0 chr1 264088961 264089268 -18104396 - AluSq SINE Alu -6 307 1 320 259 54 0 chr1 264089559 264089671 -18103993 + L1MC4 LINE L1 7924 8041 -1 1715 179 10 32 chr1 264089717 264090030 -18103634 + AluJo SINE Alu 1 306 -6 1714 136 104 17 chr1 264090036 264090323 -18103341 + AluSx SINE Alu 1 312 0 235 296 56 0 chr1 264090888 264090996 -18102668 + L1ME LINE L1 5268 5381 -765 4404 60 7 2 chr1 264091012 264091575 -18102089 + L1PA8 LINE L1 5603 6168 -4 1770 103 0 144 chr1 264091577 264091937 -18101727 + AluSg1 SINE Alu 1 308 -1 352 246 55 27 chr1 264091939 264092049 -18101615 + L1ME LINE L1 5387 5499 -622 830 189 6 72 chr1 264092465 264092645 -18101019 + FAM SINE Alu 1 168 -7 2506 67 0 0 chr1 264092653 264092953 -18100711 + AluY SINE Alu 1 300 -11 257 289 93 10 chr1 264092955 264093052 -18100612 - L2 LINE L2 -28 3285 3181 2104 206 34 15 chr1 264093124 264093659 -18100005 + MER74A LTR ERVL 1 545 -13 353 299 85 11 chr1 264093675 264093852 -18099812 - L2 LINE L2 -228 3044 2855 896 173 31 6 chr1 264093882 264094044 -18099620 - FRAM SINE Alu 0 166 1 572 238 32 21 chr1 264094712 264094901 -18098763 - L1ME3A LINE L1 -3 6167 5977 852 138 0 0 chr1 264094901 264095024 -18098640 - AluSg/x SINE Alu -7 303 181 2983 191 34 11 chr1 264095025 264095644 -18098020 - L1MB5 LINE L1 0 6174 5542 225 219 0 0 chr1 264095644 264095685 -18097979 - L1MB5 LINE L1 -1262 4884 4844 654 305 94 0 chr1 264095880 264096093 -18097571 - MIR SINE MIR -19 243 11 1306 133 0 33 chr1 264096094 264096151 -18097513 - MER46B DNA MER2_type -2495 236 316 1010 198 0 0 chr1 264096151 264096313 -18097351 - FRAM SINE Alu -4 162 1 1306 133 0 33 chr1 264096313 264096495 -18097169 - MER46B DNA MER2_type -2414 317 130 * 1598 129 3 66 chr1 264096487 264096670 -18096994 - Tigger4(Zombi) DNA MER2_type -2463 268 108 2050 142 30 0 chr1 264096670 264096966 -18096698 - AluSx SINE Alu -7 305 1 1598 129 3 66 chr1 264096966 264097068 -18096596 - Tigger4(Zombi) DNA MER2_type -2623 108 1 1887 157 0 20 chr1 264097169 264097469 -18096195 + AluJo SINE Alu 8 301 -11 199 154 103 0 chr1 264097481 264097520 -18096144 + MIR SINE MIR 132 174 -88 1804 177 182 9 chr1 264098338 264098767 -18094897 - MLT1D LTR MaLR 0 505 3 2013 134 3 35 chr1 264098955 264099268 -18094396 - AluJo SINE Alu -5 307 5 319 352 106 18 chr1 264099308 264099535 -18094129 - MIR SINE MIR -7 255 9 231 381 17 17 chr1 264099670 264099788 -18093876 + L2 LINE L2 3132 3249 -23 1650 166 3 25 chr1 264100824 264101107 -18092557 + AluJo SINE Alu 1 277 -35 2644 46 0 7 chr1 264101107 264101412 -18092252 - AluY SINE Alu -7 304 1 2356 205 71 50 chr1 264101428 264101881 -18091783 + L1MC3 LINE L1 6836 7313 -472 2239 105 7 20 chr1 264101881 264102187 -18091477 - AluSg SINE Alu -8 302 1 2356 205 71 50 chr1 264102187 264102507 -18091157 + L1MC3 LINE L1 7313 7625 -160 719 143 8 24 chr1 264102507 264102633 -18091031 + FLAM_C SINE Alu 3 126 -17 2342 98 0 3 chr1 264102653 264102950 -18090714 + AluSx SINE Alu 1 296 -16 487 222 20 46 chr1 264102966 264103119 -18090545 + L1MD3 LINE L1 7845 7993 -2 180 229 0 0 chr1 264103209 264103244 -18090420 - MIR SINE MIR -38 224 190 320 195 0 81 chr1 264107213 264107300 -18086364 - 7SK RNA RNA -68 125 46 2513 85 0 0 chr1 264108461 264108767 -18084897 - AluSx SINE Alu -6 306 1 2264 144 0 6 chr1 264109807 264110153 -18083511 - MER2 DNA MER2_type 0 344 1 25 0 0 0 chr1 264115074 264115099 -18078565 + AT_rich Low_complexity Low_complexity 1 25 0 2406 57 17 20 chr1 264115612 264115912 -18077752 + AluSc SINE Alu 1 299 -10 1919 141 13 29 chr1 264116318 264116631 -18077033 - AluJo SINE Alu -4 308 1 218 377 55 34 chr1 264117525 264117671 -18075993 - L2 LINE L2 -540 2774 2626 2157 136 0 0 chr1 264117733 264118043 -18075621 + AluSp SINE Alu 1 310 -3 2464 44 34 10 chr1 264118585 264118881 -18074783 + AluY SINE Alu 1 303 -8 990 116 64 12 chr1 264119530 264119702 -18073962 + MER21A LTR ERV1 25 205 -726 2123 147 102 49 chr1 264119718 264119812 -18073852 + MER21A LTR ERV1 459 547 -384 2134 84 0 87 chr1 264119812 264120167 -18073497 - AluSx SINE Alu 0 328 1 2123 147 102 49 chr1 264120167 264120520 -18073144 + MER21A LTR ERV1 547 931 0 236 299 0 15 chr1 264120594 264120661 -18073003 + L1M4 LINE L1 2523 2588 -3558 982 173 0 58 chr1 264120691 264120899 -18072765 - MER3 DNA MER1_type -7 202 7 768 225 49 28 chr1 264120916 264121175 -18072489 + L1M4 LINE L1 2609 2876 -3270 2567 43 0 3 chr1 264121175 264121478 -18072186 + AluY SINE Alu 1 302 -9 768 225 49 28 chr1 264121478 264121503 -18072161 + L1M4 LINE L1 2876 2899 -3247 378 62 0 0 chr1 264121512 264121560 -18072104 + L1MB3 LINE L1 6079 6126 -57 1938 152 0 3 chr1 264121622 264121911 -18071753 + AluSx SINE Alu 1 288 -24 26 30 0 0 chr1 264121911 264121944 -18071720 + AT_rich Low_complexity Low_complexity 1 33 0 241 298 24 0 chr1 264121999 264122083 -18071581 - L1P LINE L1 -2037 4109 4024 1433 141 0 0 chr1 264122088 264122311 -18071353 - AluSg/x SINE Alu 0 307 85 576 214 158 36 chr1 264122397 264122757 -18070907 + L1M4 LINE L1 2900 3303 -2843 333 242 86 70 chr1 264122830 264123016 -18070648 + HAL1 LINE L1 47 235 -2272 1787 163 7 23 chr1 264123056 264123362 -18070302 + AluJo SINE Alu 1 301 -11 364 257 63 127 chr1 264123410 264123788 -18069876 + MLT1G1 LTR MaLR 8 361 -234 1486 196 85 13 chr1 264123882 264124199 -18069465 - MER2 DNA MER2_type -5 340 1 261 161 0 36 chr1 264124201 264124257 -18069407 + MLT1G1 LTR MaLR 480 533 -9 2679 237 103 100 chr1 264124257 264125703 -18067961 + HAL1 LINE L1 376 1831 -676 384 77 0 0 chr1 264125703 264125755 -18067909 + (TA)n Simple_repeat Simple_repeat 2 53 0 2679 237 103 100 chr1 264125755 264126434 -18067230 + HAL1 LINE L1 1831 2507 0 2079 253 63 79 chr1 264126523 264126563 -18067101 + HAL1 LINE L1 756 795 -1712 333 0 0 0 chr1 264126563 264126600 -18067064 + (CA)n Simple_repeat Simple_repeat 2 38 0 2079 253 63 79 chr1 264126600 264127767 -18065897 + HAL1 LINE L1 795 1944 -563 554 256 106 26 chr1 264127774 264128047 -18065617 + HAL1 LINE L1 2068 2362 -145 21 0 0 0 chr1 264128143 264128164 -18065500 + AT_rich Low_complexity Low_complexity 1 21 0 196 340 35 43 chr1 264128900 264128938 -18064726 + MIR SINE MIR 113 150 -112 2560 53 0 0 chr1 264128938 264129237 -18064427 + AluSg SINE Alu 1 299 -11 196 340 35 43 chr1 264129237 264129339 -18064325 + MIR SINE MIR 150 252 -10 22 0 0 0 chr1 264130186 264130208 -18063456 + GC_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr1 264130237 264130291 -18063373 + GC_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr1 264130564 264130600 -18063064 + GC_rich Low_complexity Low_complexity 1 36 0 265 167 20 98 chr1 264130624 264130726 -18062938 + G-rich Low_complexity Low_complexity 4 97 0 2450 69 0 25 chr1 264131753 264132070 -18061594 + AluY SINE Alu 1 309 -2 384 216 69 25 chr1 264132716 264132835 -18060829 - MLT1H LTR MaLR -3 612 445 2396 156 31 10 chr1 264132876 264133293 -18060371 + MSTB LTR MaLR 1 426 0 476 245 66 13 chr1 264133390 264133541 -18060123 - MLT1H LTR MaLR -379 170 12 230 0 33 0 chr1 264133545 264133575 -18060089 + (CA)n Simple_repeat Simple_repeat 2 32 0 1545 143 36 0 chr1 264133584 264133807 -18059857 + AluSx SINE Alu 34 264 -48 2189 103 7 0 chr1 264134428 264134718 -18058946 - AluSx SINE Alu -20 292 1 1975 157 12 30 chr1 264134923 264135255 -18058409 + MER1B DNA MER1_type 14 339 0 704 267 195 54 chr1 264135711 264136116 -18057548 + MLT1K LTR MaLR 125 586 -2 1170 192 65 46 chr1 264136121 264136382 -18057282 + MSTB LTR MaLR 156 421 -5 2032 126 0 0 chr1 264136949 264137258 -18056406 - AluSx SINE Alu 0 315 7 485 241 42 84 chr1 264137515 264137706 -18055958 - MIR SINE MIR -50 212 30 581 287 129 5 chr1 264137800 264138002 -18055662 + MIR SINE MIR 36 262 0 1689 171 4 4 chr1 264138229 264138504 -18055160 + AluJo SINE Alu 2 276 -36 2104 123 0 22 chr1 264138527 264138845 -18054819 + AluSx SINE Alu 1 311 -1 298 252 72 27 chr1 264138959 264139012 -18054652 + LTR37B LTR ERV1 347 396 -72 2340 83 3 0 chr1 264139012 264139301 -18054363 + AluSp SINE Alu 1 290 -23 298 252 72 27 chr1 264139301 264139357 -18054307 + LTR37B LTR ERV1 396 461 -7 1506 192 72 23 chr1 264139357 264139706 -18053958 - MLT1B LTR MaLR 0 390 25 1129 213 9 0 chr1 264140456 264140672 -18052992 + MER20 DNA MER1_type 2 219 0 6261 194 12 40 chr1 264140759 264141415 -18052249 - L1MB3 LINE L1 0 6183 5510 1891 164 20 0 chr1 264141415 264141708 -18051956 - AluJb SINE Alu -13 299 1 6261 194 12 40 chr1 264141708 264142823 -18050841 - L1MB3 LINE L1 -673 5510 4500 763 157 25 0 chr1 264142823 264142944 -18050720 - FLAM_A SINE Alu -9 124 1 6261 194 12 40 chr1 264142944 264143586 -18050078 - L1MB3 LINE L1 -1683 4500 3842 588 191 0 26 chr1 264143589 264143704 -18049960 - AluJo SINE Alu -18 294 183 920 158 0 0 chr1 264143705 264143838 -18049826 - AluJo SINE Alu -179 133 1 1273 266 48 16 chr1 264143839 264144275 -18049389 - L1MB3 LINE L1 -2297 3849 3400 * 15241 189 23 9 chr1 264144272 264148891 -18044773 - L1PBa LINE L1 -846 6016 1331 308 252 63 9 chr1 264148894 264149005 -18044659 - L1MB3 LINE L1 -2968 3178 3062 2007 100 25 7 chr1 264149005 264149286 -18044378 - AluSx SINE Alu -26 286 1 339 70 0 0 chr1 264149288 264149331 -18044333 + MER77 LTR ERV1 479 521 -84 1850 166 6 35 chr1 264149331 264149644 -18044020 + AluJo SINE Alu 1 304 -8 388 250 0 21 chr1 264149675 264149771 -18043893 + MER77 LTR ERV1 508 601 -4 2276 116 0 0 chr1 264150044 264150355 -18043309 - AluY SINE Alu 0 311 1 225 254 42 59 chr1 264150904 264151022 -18042642 + L3 LINE CR1 1346 1461 -116 420 275 45 45 chr1 264151060 264151260 -18042404 + MIR SINE MIR 13 212 -50 2335 107 0 0 chr1 264151370 264151680 -18041984 + AluSg SINE Alu 1 310 0 1984 167 74 12 chr1 264151716 264152123 -18041541 + MSTB1 LTR MaLR 1 432 0 233 259 25 12 chr1 264152881 264152962 -18040702 - L2 LINE L2 -3 3310 3229 188 299 146 7 chr1 264153043 264153187 -18040477 - L2 LINE L2 -262 3051 2888 24 0 0 0 chr1 264153607 264153631 -18040033 + AT_rich Low_complexity Low_complexity 1 24 0 2179 128 118 20 chr1 264153631 264154021 -18039643 + MSTA LTR MaLR 1 428 0 2985 117 2 16 chr1 264154024 264154469 -18039195 - L1PB3 LINE L1 0 6154 5716 1706 161 21 14 chr1 264154663 264154949 -18038715 + AluJo SINE Alu 8 295 -17 1695 180 7 10 chr1 264155043 264155337 -18038327 - AluJb SINE Alu -11 301 9 1426 153 0 0 chr1 264155402 264155617 -18038047 - AluSq SINE Alu -14 299 85 576 214 158 36 chr1 264155703 264156063 -18037601 + L1M4 LINE L1 2900 3303 -2843 333 242 86 70 chr1 264156136 264156322 -18037342 + HAL1 LINE L1 47 235 -2272 1787 163 7 23 chr1 264156362 264156668 -18036996 + AluJo SINE Alu 1 301 -11 262 210 48 16 chr1 264156845 264156907 -18036757 + C-rich Low_complexity Low_complexity 1 64 0 220 251 130 105 chr1 264157374 264157417 -18036247 + L2 LINE L2 2722 2762 -552 21 0 0 0 chr1 264157417 264157438 -18036226 + AT_rich Low_complexity Low_complexity 1 21 0 220 251 130 105 chr1 264157438 264157621 -18036043 + L2 LINE L2 2762 2974 -340 568 204 0 0 chr1 264157716 264157819 -18035845 - AluSg/x SINE Alu -20 290 188 2893 53 133 8 chr1 264157819 264158217 -18035447 + LTR7 LTR ERV1 1 448 -2 20254 97 23 14 chr1 264158221 264161177 -18032487 + HERVH LTR ERV1 3 2987 -4726 925 134 6 47 chr1 264161149 264161321 -18032343 + HERVH LTR ERV1 3126 3290 -4423 * 8693 103 5 7 chr1 264161311 264163034 -18030630 + HERVH LTR ERV1 3492 5273 -1818 1194 154 58 0 chr1 264163035 264163243 -18030421 + HERVH LTR ERV1 5600 5819 -1894 * 2645 74 45 13 chr1 264163241 264163621 -18030043 + HERVH LTR ERV1 7322 7713 0 3467 54 16 9 chr1 264163621 264164066 -18029598 + LTR7 LTR ERV1 1 448 -2 624 129 0 0 chr1 264164068 264164152 -18029512 - AluSq SINE Alu -120 193 110 474 139 0 0 chr1 264164152 264164224 -18029440 + AluSg SINE Alu 2 73 -236 880 174 144 95 chr1 264164224 264164592 -18029072 + LTR7 LTR ERV1 65 450 0 1689 84 0 0 chr1 264164592 264164807 -18028857 + AluSg SINE Alu 81 295 -17 243 0 0 0 chr1 264164807 264164834 -18028830 + (GA)n Simple_repeat Simple_repeat 2 28 0 829 99 0 0 chr1 264164835 264164946 -18028718 - AluSq SINE Alu -201 111 1 196 183 0 84 chr1 264164948 264165019 -18028645 + L2 LINE L2 3165 3229 -84 263 180 80 0 chr1 264166191 264166241 -18027423 - MIR SINE MIR -136 72 19 207 100 0 0 chr1 264166737 264166767 -18026897 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 2439 42 3 13 chr1 264167136 264167448 -18026216 - AluY SINE Alu -2 309 1 1651 138 3 57 chr1 264167448 264167613 -18026051 - AluJb SINE Alu -30 282 139 1368 50 0 28 chr1 264167613 264167795 -18025869 + L1PA8 LINE L1 5989 6165 -7 1651 138 3 57 chr1 264167795 264167927 -18025737 - AluJb SINE Alu -173 139 1 887 139 0 0 chr1 264167999 264168128 -18025536 + FLAM_A SINE Alu 5 133 0 311 326 143 29 chr1 264168513 264168786 -18024878 + L1MEd LINE L1 505 808 -5311 2034 117 3 0 chr1 264168789 264169109 -18024555 - AluSx SINE Alu 0 321 1 233 274 44 15 chr1 264169263 264169398 -18024266 + L1MEd LINE L1 900 1038 -5081 822 131 175 78 chr1 264169461 264169667 -18023997 + AluJo SINE Alu 86 311 -1 2557 225 78 7 chr1 264169743 264170423 -18023241 - L1ME2 LINE L1 -30 6134 5407 2051 117 0 13 chr1 264170459 264170757 -18022907 + AluSx SINE Alu 1 294 -18 218 156 22 0 chr1 264171086 264171131 -18022533 + GA-rich Low_complexity Low_complexity 2 47 0 879 97 14 29 chr1 264171142 264171355 -18022309 + (GGA)n Simple_repeat Simple_repeat 1 209 0 1541 139 27 8 chr1 264171393 264171656 -18022008 + MLT1C LTR MaLR 199 555 0 883 186 26 49 chr1 264172662 264172888 -18020776 + AluJo SINE Alu 82 302 -10 1824 162 3 7 chr1 264173015 264173318 -18020346 + AluJo SINE Alu 1 302 -10 2118 111 10 0 chr1 264174129 264174427 -18019237 + AluSx SINE Alu 1 301 -11 1782 162 10 3 chr1 264174747 264175044 -18018620 - AluSx SINE Alu -13 299 1 1255 185 16 47 chr1 264175885 264176204 -18017460 + AluJo SINE Alu 3 311 -1 32 26 0 0 chr1 264177335 264177374 -18016290 + GC_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr1 264177621 264177666 -18015998 + GC_rich Low_complexity Low_complexity 1 45 0 290 65 0 22 chr1 264177895 264177941 -18015723 + (CGGGGG)n Simple_repeat Simple_repeat 5 49 0 465 19 0 0 chr1 264180857 264180911 -18012753 + (TC)n Simple_repeat Simple_repeat 1 54 0 247 238 95 95 chr1 264182196 264182364 -18011300 - MIR SINE MIR -38 224 57 2323 79 0 3 chr1 264182637 264182941 -18010723 + AluSx SINE Alu 1 303 -9 288 270 70 30 chr1 264183095 264183195 -18010469 + MIR SINE MIR 2 105 -157 2030 116 10 6 chr1 264183259 264183570 -18010094 + AluSx SINE Alu 1 312 0 379 279 52 64 chr1 264183786 264183958 -18009706 + L1ME4a LINE L1 5673 5842 -279 942 153 19 60 chr1 264183968 264184066 -18009598 + MER106A DNA MER1_type 30 131 -105 2220 85 0 0 chr1 264184066 264184348 -18009316 + AluSx SINE Alu 1 282 -30 333 0 0 0 chr1 264184350 264184387 -18009277 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 942 153 19 60 chr1 264184387 264184501 -18009163 + MER106A DNA MER1_type 132 236 0 1744 170 0 10 chr1 264184691 264184979 -18008685 - AluJo SINE Alu -27 285 1 207 0 0 0 chr1 264185049 264185072 -18008592 + (TA)n Simple_repeat Simple_repeat 1 23 0 247 261 180 27 chr1 264186924 264187035 -18006629 - MIR3 SINE MIR -32 176 49 1942 132 26 3 chr1 264188102 264188405 -18005259 - AluSx SINE Alu -2 310 1 1721 142 0 42 chr1 264188428 264188737 -18004927 - AluJo SINE Alu -15 297 2 1506 161 50 37 chr1 264189122 264189420 -18004244 - AluJo SINE Alu -7 305 4 21 0 0 0 chr1 264189422 264189443 -18004221 + AT_rich Low_complexity Low_complexity 1 21 0 2316 90 0 0 chr1 264189448 264189747 -18003917 + AluSg SINE Alu 1 299 -11 1740 125 0 12 chr1 264190006 264190262 -18003402 + AluSg SINE Alu 43 295 -15 1290 140 17 30 chr1 264190780 264191016 -18002648 - AluJo SINE Alu -79 233 1 2187 105 0 13 chr1 264191523 264191838 -18001826 + AluSx SINE Alu 2 312 0 1579 100 0 54 chr1 264191910 264192169 -18001495 + AluY SINE Alu 66 310 -1 2197 95 10 0 chr1 264192242 264192538 -18001126 + AluSp SINE Alu 1 299 -14 2220 184 58 30 chr1 264192776 264193205 -18000459 + MER21B LTR ERV1 1 441 -422 3137 134 19 55 chr1 264193240 264193544 -18000120 + MER41B LTR ERV1 77 352 -283 2097 119 3 0 chr1 264193544 264193856 -17999808 + AluSq SINE Alu 1 313 0 3137 134 19 55 chr1 264193856 264194131 -17999533 + MER41B LTR ERV1 352 635 0 1661 180 107 25 chr1 264194131 264194486 -17999178 + MER21B LTR ERV1 465 848 -15 2246 98 0 10 chr1 264194762 264195068 -17998596 - AluSx SINE Alu -9 303 1 261 0 0 0 chr1 264195249 264195278 -17998386 + (TA)n Simple_repeat Simple_repeat 1 29 0 2003 98 13 57 chr1 264195278 264195596 -17998068 - AluSx SINE Alu -8 304 1 1916 132 7 0 chr1 264196108 264196424 -17997240 - AluSx SINE Alu 0 318 1 1668 164 0 20 chr1 264196522 264196815 -17996849 + AluJb SINE Alu 6 292 -20 292 220 17 0 chr1 264198437 264198496 -17995168 - Tigger2 DNA MER2_type -11 2707 2648 632 184 0 0 chr1 264198503 264198601 -17995063 - FLAM_C SINE Alu -17 126 29 3564 151 52 90 chr1 264198624 264199476 -17994188 - Tigger2 DNA MER2_type -1899 819 1 367 265 38 15 chr1 264199826 264199958 -17993706 + L1ME4a LINE L1 5957 6091 -30 21 0 0 0 chr1 264200298 264200319 -17993345 + AT_rich Low_complexity Low_complexity 1 21 0 377 215 275 7 chr1 264200324 264200473 -17993191 - MIR SINE MIR -2 260 72 1151 246 159 77 chr1 264200656 264200677 -17992987 - L1MC4 LINE L1 0 8042 8024 1869 150 3 10 chr1 264200677 264200990 -17992674 + AluJo SINE Alu 1 311 -1 1151 246 159 77 chr1 264200990 264202229 -17991435 - L1MC4 LINE L1 -18 8024 6888 1806 158 3 0 chr1 264202229 264202527 -17991137 - AluJo SINE Alu -13 299 1 855 78 26 0 chr1 264202535 264202650 -17991014 - L1MA6 LINE L1 -5 6295 6178 1151 246 159 77 chr1 264202650 264202758 -17990906 - L1MC4 LINE L1 -1160 6882 6516 940 165 72 5 chr1 264202780 264202974 -17990690 + MER2 DNA MER2_type 4 210 -135 210 237 0 41 chr1 264202991 264203088 -17990576 + T-rich Low_complexity Low_complexity 3 95 0 298 243 19 37 chr1 264203178 264203285 -17990379 - L1MC4 LINE L1 -1593 6449 6345 1001 125 20 0 chr1 264204112 264204264 -17989400 - AluSg/x SINE Alu -11 299 145 1237 154 43 60 chr1 264204411 264204641 -17989023 - L1MA7 LINE L1 -2 6289 6064 896 138 0 0 chr1 264204641 264204771 -17988893 + FLAM_C SINE Alu 1 130 -3 1237 154 43 60 chr1 264204771 264204839 -17988825 - L1MA7 LINE L1 -227 6064 5996 268 115 77 0 chr1 264204839 264204891 -17988773 - L1MA7 LINE L1 -970 5321 5266 191 167 0 42 chr1 264204891 264204939 -17988725 + (TATG)n Simple_repeat Simple_repeat 2 47 0 3747 147 64 9 chr1 264204943 264205610 -17988054 - L1MA7 LINE L1 -290 6001 5273 1547 165 71 0 chr1 264205610 264205877 -17987787 - AluJb SINE Alu -26 286 1 3747 147 64 9 chr1 264205877 264205917 -17987747 - L1MA7 LINE L1 -1018 5273 5237 336 250 57 81 chr1 264206280 264206404 -17987260 - MIR3 SINE MIR -44 164 58 1047 168 35 5 chr1 264206405 264206607 -17987057 - MER3 DNA MER1_type -1 208 1 538 238 135 65 chr1 264206882 264207206 -17986458 + L1MCc LINE L1 1182 1692 -4918 2286 101 0 0 chr1 264207288 264207584 -17986080 - AluSx SINE Alu -16 296 1 641 178 275 16 chr1 264207598 264207856 -17985808 + L1ME4a LINE L1 5764 6088 -33 1279 192 59 21 chr1 264207965 264208251 -17985413 - AluJb SINE Alu -15 297 1 1325 150 0 73 chr1 264208515 264208775 -17984889 + AluJo SINE Alu 9 249 -63 2143 119 3 0 chr1 264209264 264209558 -17984106 + AluSx SINE Alu 1 295 -17 1575 174 65 7 chr1 264211026 264211319 -17982345 + AluJo SINE Alu 1 310 -2 854 167 37 19 chr1 264211588 264211750 -17981914 + FRAM SINE Alu 3 167 -9 1524 123 31 0 chr1 264213051 264213278 -17980386 + AluSc SINE Alu 1 234 -75 334 161 16 0 chr1 264213380 264213442 -17980222 + AluSc SINE Alu 239 301 0 22 70 0 0 chr1 264214221 264214264 -17979400 + AT_rich Low_complexity Low_complexity 1 43 0 187 226 0 186 chr1 264214770 264214872 -17978792 + L2 LINE L2 3134 3216 -56 703 264 188 9 chr1 264214969 264215298 -17978366 - LTR33 LTR ERVL -48 473 86 1383 123 15 5 chr1 264215313 264215516 -17978148 + AluSc SINE Alu 68 272 -37 1335 113 97 0 chr1 264215577 264215772 -17977892 + AluSq SINE Alu 5 218 -95 1336 165 57 61 chr1 264216618 264216915 -17976749 - AluJo SINE Alu -16 296 1 244 245 0 0 chr1 264217304 264217357 -17976307 - L1MC4a LINE L1 -1876 5932 5880 2595 50 0 0 chr1 264217536 264217837 -17975827 + AluY SINE Alu 1 301 -10 1472 148 164 12 chr1 264217940 264218196 -17975468 + AluJb SINE Alu 1 295 -7 219 69 0 0 chr1 264218200 264218229 -17975435 + (TA)n Simple_repeat Simple_repeat 2 30 0 1852 162 13 0 chr1 264218468 264218770 -17974894 + AluJb SINE Alu 1 306 -6 483 270 67 79 chr1 264219074 264219142 -17974522 + MLT1H LTR MaLR 44 111 -438 1710 172 3 7 chr1 264219142 264219438 -17974226 + AluJb SINE Alu 3 297 -15 483 270 67 79 chr1 264219438 264219636 -17974028 + MLT1H LTR MaLR 111 307 -242 363 136 0 0 chr1 264219777 264219836 -17973828 + MLT1H LTR MaLR 491 549 0 761 187 159 16 chr1 264220054 264220236 -17973428 - MER3 DNA MER1_type 0 209 2 1539 187 22 7 chr1 264220319 264220636 -17973028 + AluJo SINE Alu 1 321 0 2411 88 0 3 chr1 264221326 264221633 -17972031 + AluSc SINE Alu 1 306 -3 2162 138 0 13 chr1 264222140 264222451 -17971213 + AluSx SINE Alu 1 307 -5 2399 74 0 3 chr1 264222656 264222955 -17970709 + AluY SINE Alu 1 298 -13 27 29 0 0 chr1 264222965 264222999 -17970665 + AT_rich Low_complexity Low_complexity 1 34 0 1341 103 19 22 chr1 264223333 264223653 -17970011 + L1MA3 LINE L1 5794 6305 0 26 0 0 0 chr1 264223722 264223748 -17969916 + AT_rich Low_complexity Low_complexity 1 26 0 181 308 0 0 chr1 264223766 264223818 -17969846 - L2 LINE L2 0 3313 3262 180 344 167 41 chr1 264224161 264224431 -17969233 - L2 LINE L2 -399 2915 2612 1337 161 199 14 chr1 264224484 264224555 -17969109 + MER44D DNA MER2_type 1 58 -2433 182 61 0 30 chr1 264224555 264224588 -17969076 + (CAGAGA)n Simple_repeat Simple_repeat 6 37 0 1337 161 199 14 chr1 264224588 264224618 -17969046 + MER44D DNA MER2_type 58 81 -2410 1196 202 0 74 chr1 264224618 264224876 -17968788 + MER8 DNA MER2_type 1 239 0 1337 161 199 14 chr1 264224876 264225059 -17968605 + MER44D DNA MER2_type 81 609 0 286 331 63 7 chr1 264225062 264225204 -17968460 - L2 LINE L2 -849 2465 2316 513 336 106 32 chr1 264225301 264225866 -17967798 - L2 LINE L2 -1482 1832 1226 597 225 0 0 chr1 264226109 264226229 -17967435 + MER20 DNA MER1_type 31 150 -69 1735 130 4 30 chr1 264226230 264226492 -17967172 - AluSx SINE Alu -57 255 1 1445 233 136 5 chr1 264226779 264226925 -17966739 + MLT1C LTR MaLR 8 133 -334 1966 132 31 3 chr1 264226925 264227212 -17966452 + AluSg SINE Alu 1 295 -15 1445 233 136 5 chr1 264227212 264227469 -17966195 + MLT1C LTR MaLR 133 464 -3 189 219 12 98 chr1 264227924 264228006 -17965658 - MIR SINE MIR -128 134 60 509 259 176 36 chr1 264228228 264228587 -17965077 + MLT1H LTR MaLR 139 547 -2 1717 162 17 24 chr1 264228601 264228897 -17964767 - AluJb SINE Alu -18 294 1 2053 98 81 3 chr1 264228933 264229218 -17964446 + AluSx SINE Alu 1 307 -5 1526 92 117 0 chr1 264229771 264229977 -17963687 + MER30 DNA MER1_type 1 230 0 330 259 44 30 chr1 264230944 264231079 -17962585 + HAL1 LINE L1 2012 2148 -359 560 316 63 15 chr1 264231104 264231373 -17962291 + HAL1 LINE L1 2226 2507 0 1921 149 6 19 chr1 264231377 264231693 -17961971 + AluJo SINE Alu 1 312 0 846 181 0 0 chr1 264231702 264231840 -17961824 + FRAM SINE Alu 31 168 -8 180 0 0 0 chr1 264232400 264232420 -17961244 + (A)n Simple_repeat Simple_repeat 1 20 0 2388 98 0 13 chr1 264233327 264233642 -17960022 - AluSx SINE Alu -1 311 1 791 201 94 0 chr1 264234201 264234360 -17959304 + FAM SINE Alu 1 174 -1 1019 213 11 6 chr1 264234643 264234817 -17958847 - FAM SINE Alu 0 175 1 1960 139 7 17 chr1 264235085 264235380 -17958284 + AluSx SINE Alu 1 292 -20 2169 206 50 71 chr1 264235621 264236177 -17957487 + L1ME1 LINE L1 5554 6097 -69 1995 127 41 0 chr1 264236177 264236469 -17957195 + AluSx SINE Alu 1 304 -8 2169 206 50 71 chr1 264236469 264236533 -17957131 + L1ME1 LINE L1 6097 6161 -5 937 266 14 5 chr1 264236570 264236792 -17956872 + MER58A DNA MER1_type 1 224 0 1060 197 4 48 chr1 264236861 264236993 -17956671 + AluJo SINE Alu 3 122 -190 1956 151 3 0 chr1 264236993 264237284 -17956380 + AluSx SINE Alu 1 292 -20 1060 197 4 48 chr1 264237284 264237379 -17956285 + AluJo SINE Alu 122 220 -92 2389 87 0 0 chr1 264237604 264237903 -17955761 - AluSp SINE Alu -14 299 1 2274 67 11 3 chr1 264238133 264238416 -17955248 + L1PB2 LINE L1 5865 6149 -2 283 220 17 0 chr1 264238484 264238543 -17955121 - FLAM_A SINE Alu -27 106 47 1637 186 10 16 chr1 264238664 264238976 -17954688 - AluJo SINE Alu -2 310 1 2197 124 3 0 chr1 264239347 264239654 -17954010 + AluSg SINE Alu 1 308 -2 1832 171 0 7 chr1 264240603 264240895 -17952769 + AluJo SINE Alu 1 290 -22 285 301 54 21 chr1 264241082 264241175 -17952489 + L2 LINE L2 3156 3251 -21 1963 142 7 3 chr1 264241688 264241991 -17951673 + AluSx SINE Alu 1 304 -8 841 174 0 35 chr1 264242197 264242341 -17951323 + FLAM_C SINE Alu 2 140 -3 423 283 146 35 chr1 264242988 264243214 -17950450 + MIR SINE MIR 6 256 -6 1606 116 171 4 chr1 264244016 264244274 -17949390 + AluSg1 SINE Alu 1 301 -8 1795 190 0 3 chr1 264244386 264244696 -17948968 - AluJo SINE Alu -3 309 1 818 163 0 30 chr1 264244986 264245121 -17948543 + FLAM_C SINE Alu 5 135 -8 1770 207 63 88 chr1 264245432 264246200 -17947464 - L1ME LINE L1 -718 5448 4705 2253 88 0 7 chr1 264247789 264248085 -17945579 + AluSc SINE Alu 16 309 0 1224 210 97 19 chr1 264248189 264248456 -17945208 + AluJo SINE Alu 1 288 -14 2283 86 0 38 chr1 264248482 264248797 -17944867 + AluSg SINE Alu 1 303 -7 216 200 0 0 chr1 264249457 264249502 -17944162 + (TA)n Simple_repeat Simple_repeat 1 45 0 252 183 268 0 chr1 264249767 264249849 -17943815 + MER112 DNA MER1_type 157 260 0 2706 164 81 19 chr1 264250228 264250425 -17943239 + MER44D DNA MER2_type 1 184 -2303 1486 94 49 22 chr1 264250425 264250649 -17943015 - MER30 DNA MER1_type 0 230 1 2706 164 81 19 chr1 264250649 264250969 -17942695 + MER44D DNA MER2_type 184 605 0 261 0 0 0 chr1 264251061 264251090 -17942574 + (A)n Simple_repeat Simple_repeat 1 29 0 2376 95 0 3 chr1 264251101 264251405 -17942259 + AluSx SINE Alu 1 303 -9 181 378 82 22 chr1 264251805 264251940 -17941724 + MIR3 SINE MIR 17 159 -49 294 112 19 46 chr1 264252122 264252337 -17941327 + AluJo SINE Alu 1 301 -1 302 230 130 20 chr1 264253194 264253294 -17940370 - MIR SINE MIR -82 180 70 273 363 98 13 chr1 264254246 264254623 -17939041 + L2 LINE L2 2221 2629 -685 223 324 118 64 chr1 264254907 264255237 -17938427 + L2 LINE L2 2925 3272 0 680 316 111 18 chr1 264255715 264256095 -17937569 - L2 LINE L2 -2 3311 2897 860 188 31 47 chr1 264256122 264256314 -17937350 - AluJo SINE Alu -22 290 102 727 178 0 31 chr1 264256315 264256444 -17937220 + FLAM_C SINE Alu 2 126 -17 633 179 0 0 chr1 264256475 264256570 -17937094 - FLAM_A SINE Alu -26 116 22 1923 131 0 7 chr1 264256684 264256959 -17936705 + AluSx SINE Alu 1 273 -39 6590 31 0 3 chr1 264256959 264257683 -17935981 + L1PA5 LINE L1 5418 6141 -13 2237 112 0 0 chr1 264257786 264258073 -17935591 + AluSx SINE Alu 1 287 -25 2001 88 37 40 chr1 264258080 264258213 -17935451 + AluSg SINE Alu 1 133 -177 2414 95 0 0 chr1 264258213 264258519 -17935145 + AluSg SINE Alu 1 306 -4 2001 88 37 40 chr1 264258519 264258681 -17934983 + AluSg SINE Alu 133 295 -15 360 238 300 25 chr1 264258694 264258934 -17934730 + L1MB8 LINE L1 5494 5799 -322 922 203 63 17 chr1 264259107 264259344 -17934320 + L1MA9 LINE L1 6027 6274 -38 1308 182 99 69 chr1 264259369 264259834 -17933830 + MER39 LTR ERV1 8 707 0 25 31 0 0 chr1 264259848 264259880 -17933784 + AT_rich Low_complexity Low_complexity 1 32 0 935 195 143 0 chr1 264260324 264260545 -17933119 - MER58B DNA MER1_type -53 288 36 293 186 0 17 chr1 264260580 264260639 -17933025 + L2 LINE L2 3211 3268 -4 1066 116 27 0 chr1 264260775 264260921 -17932743 - AluSg/x SINE Alu -26 284 135 2281 97 3 0 chr1 264260978 264261276 -17932388 + AluSx SINE Alu 1 299 -13 199 263 84 21 chr1 264261519 264261614 -17932050 + MIR SINE MIR 106 206 -56 1607 154 71 47 chr1 264264429 264264793 -17928871 + L1MB8 LINE L1 5806 6178 0 2134 102 3 7 chr1 264265002 264265332 -17928332 + AluSx SINE Alu 1 329 0 1632 154 16 49 chr1 264265340 264265645 -17928019 + AluJo SINE Alu 1 295 -17 1985 116 4 4 chr1 264265719 264265994 -17927670 + AluSx SINE Alu 36 310 -2 1721 246 60 20 chr1 264266068 264266571 -17927093 + L1MB7 LINE L1 5657 6179 -5 211 348 93 17 chr1 264266793 264266911 -17926753 + L2 LINE L2 3138 3264 -8 209 227 0 0 chr1 264266967 264267011 -17926653 + A-rich Low_complexity Low_complexity 1 44 0 561 223 41 136 chr1 264267318 264267360 -17926304 - MIR SINE MIR -1 261 217 2065 136 27 0 chr1 264267360 264267655 -17926009 - AluJb SINE Alu -9 303 1 561 223 41 136 chr1 264267655 264267719 -17925945 - MIR SINE MIR -45 217 149 1666 166 10 24 chr1 264267719 264268008 -17925656 - AluJo SINE Alu -27 285 1 561 223 41 136 chr1 264268008 264268142 -17925522 - MIR SINE MIR -113 149 43 1069 132 12 6 chr1 264268345 264268512 -17925152 - FRAM SINE Alu -11 165 1 25 0 0 0 chr1 264269473 264269498 -17924166 + AT_rich Low_complexity Low_complexity 1 25 0 249 312 126 35 chr1 264269615 264269653 -17924011 - L3 LINE CR1 -95 1482 1449 1850 157 0 20 chr1 264269653 264269959 -17923705 - AluJb SINE Alu -12 300 1 249 312 126 35 chr1 264269959 264270119 -17923545 - L3 LINE CR1 -128 1449 1266 749 224 37 61 chr1 264270196 264270355 -17923309 + MER58C DNA MER1_type 7 161 -2259 2319 101 0 3 chr1 264270355 264270651 -17923013 - AluSx SINE Alu -17 295 1 749 224 37 61 chr1 264270651 264270705 -17922959 + MER58C DNA MER1_type 161 215 0 234 0 0 0 chr1 264270841 264270867 -17922797 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2221 77 26 42 chr1 264271055 264271368 -17922296 + AluY SINE Alu 1 308 -3 287 303 150 38 chr1 264273104 264273471 -17920193 + LTR67 LTR ERVL 149 556 -1 777 163 0 22 chr1 264273825 264273960 -17919704 - FLAM_C SINE Alu 0 133 2 719 169 0 44 chr1 264274188 264274324 -17919340 - FLAM_C SINE Alu -3 130 1 2637 48 0 16 chr1 264274506 264274822 -17918842 + AluY SINE Alu 1 311 0 2608 55 7 0 chr1 264274885 264275193 -17918471 + AluY SINE Alu 1 310 -1 381 276 105 66 chr1 264276062 264276290 -17917374 - MIR SINE MIR -19 243 7 2197 119 7 0 chr1 264277444 264277747 -17915917 - AluSx SINE Alu -7 305 1 23 0 0 0 chr1 264277904 264277927 -17915737 + AT_rich Low_complexity Low_complexity 1 23 0 464 95 14 0 chr1 264278005 264278079 -17915585 + MER2 DNA MER2_type 111 185 -160 1651 166 13 32 chr1 264278095 264278408 -17915256 + AluJo SINE Alu 1 307 -5 880 158 8 0 chr1 264278470 264278603 -17915061 - AluJo SINE Alu -178 134 1 1832 114 73 4 chr1 264278647 264278920 -17914744 - AluSq SINE Alu -21 292 1 5902 158 45 35 chr1 264279102 264279905 -17913759 + L1MC1 LINE L1 4823 5616 -717 882 115 6 89 chr1 264279905 264279940 -17913724 - U4 snRNA snRNA -1 144 108 2276 107 0 25 chr1 264279940 264280082 -17913582 + AluSx SINE Alu 1 145 -167 2348 85 0 13 chr1 264280082 264280389 -17913275 + AluSx SINE Alu 1 303 -9 2276 107 0 25 chr1 264280389 264280565 -17913099 + AluSx SINE Alu 145 311 -1 882 115 6 89 chr1 264280565 264280686 -17912978 - U4 snRNA snRNA -37 108 1 5902 158 45 35 chr1 264280686 264281226 -17912438 + L1MC1 LINE L1 5616 6185 -148 2305 112 0 0 chr1 264281226 264281522 -17912142 - AluSx SINE Alu -16 296 1 5902 158 45 35 chr1 264281522 264281655 -17912009 + L1MC1 LINE L1 6185 6315 -18 1982 144 3 19 chr1 264281715 264282027 -17911637 + AluJo SINE Alu 1 307 -5 1941 176 8 43 chr1 264282101 264282172 -17911492 + L1MB5 LINE L1 5764 5836 -338 1813 154 55 3 chr1 264282172 264282465 -17911199 + AluJb SINE Alu 3 310 -2 1941 176 8 43 chr1 264282465 264282786 -17910878 + L1MB5 LINE L1 5836 6142 -32 25 31 0 0 chr1 264282885 264282917 -17910747 + AT_rich Low_complexity Low_complexity 1 32 0 2016 130 0 11 chr1 264283001 264283320 -17910344 + AluSx SINE Alu 1 316 0 307 56 0 0 chr1 264283353 264283389 -17910275 + tRNA-Gly-GGC tRNA tRNA 1 36 -38 421 256 119 12 chr1 264285719 264285887 -17907777 - MER5A DNA MER1_type -3 186 1 27 0 0 0 chr1 264285992 264286019 -17907645 + AT_rich Low_complexity Low_complexity 1 27 0 324 240 149 32 chr1 264286544 264286698 -17906966 + L1ME4a LINE L1 5938 6109 -12 2299 121 0 0 chr1 264286717 264287023 -17906641 - AluSq SINE Alu -7 306 1 1552 186 6 43 chr1 264287154 264287476 -17906188 + AluJb SINE Alu 1 310 -2 240 59 0 0 chr1 264287945 264287979 -17905685 + (TG)n Simple_repeat Simple_repeat 2 35 0 208 269 92 25 chr1 264288204 264288323 -17905341 + L3 LINE CR1 1031 1157 -420 2455 74 3 0 chr1 264288349 264288647 -17905017 + AluSq SINE Alu 5 303 -10 216 317 69 10 chr1 264288725 264288826 -17904838 + L3 LINE CR1 1324 1430 -147 180 111 0 0 chr1 264289013 264289040 -17904624 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 182 284 0 23 chr1 264289205 264289293 -17904371 - L2 LINE L2 -340 2973 2888 2065 148 0 10 chr1 264289628 264289938 -17903726 + AluJb SINE Alu 1 307 -5 1295 238 75 36 chr1 264290143 264290606 -17903058 + MLT1B LTR MaLR 3 460 -7 450 195 177 0 chr1 264290936 264291049 -17902615 + MER3 DNA MER1_type 41 126 -83 1960 151 13 35 chr1 264291050 264291229 -17902435 + MER3 DNA MER1_type 2236 2418 -206 2622 129 18 36 chr1 264291229 264291386 -17902278 + Tigger2a DNA MER2_type 1 159 -2549 2308 90 0 7 chr1 264291386 264291685 -17901979 + AluSg SINE Alu 1 297 -13 2622 129 18 36 chr1 264291685 264291968 -17901696 + Tigger2a DNA MER2_type 159 433 -1 1960 151 13 35 chr1 264291968 264292085 -17901579 + MER3 DNA MER1_type 2418 2523 -101 1966 122 6 53 chr1 264292085 264292404 -17901260 + AluJo SINE Alu 1 304 -8 1960 151 13 35 chr1 264292404 264292504 -17901160 + MER3 DNA MER1_type 2523 2624 0 1910 168 0 13 chr1 264293485 264293800 -17899864 - AluJo SINE Alu -1 311 1 2515 84 0 0 chr1 264294148 264294457 -17899207 - AluSg SINE Alu -1 309 1 788 142 8 0 chr1 264295401 264295521 -17898143 + 5S rRNA rRNA 1 121 0 2050 154 3 0 chr1 264295740 264296045 -17897619 + AluJb SINE Alu 1 306 -6 2168 125 0 34 chr1 264296067 264296387 -17897277 + AluSx SINE Alu 1 309 -3 739 160 0 53 chr1 264296443 264296574 -17897090 - FLAM_C SINE Alu -18 125 2 438 282 163 11 chr1 264296705 264296982 -17896682 + L2 LINE L2 2994 3312 -1 215 313 48 0 chr1 264298283 264298366 -17895298 - MIR SINE MIR -113 149 63 2292 80 28 0 chr1 264298620 264298906 -17894758 - AluSp SINE Alu -19 294 1 40 37 0 0 chr1 264299544 264299598 -17894066 + AT_rich Low_complexity Low_complexity 1 54 0 572 225 73 14 chr1 264299681 264299882 -17893782 + MIR SINE MIR 48 261 -1 864 129 109 15 chr1 264300386 264300587 -17893077 - Charlie5 DNA MER1_type -35 2577 2358 2298 88 14 3 chr1 264302007 264302303 -17891361 + AluSp SINE Alu 1 299 -14 576 237 23 8 chr1 264302310 264302441 -17891223 + FLAM_A SINE Alu 1 133 0 356 256 83 16 chr1 264302738 264302859 -17890805 - L2 LINE L2 0 3272 3144 236 316 111 26 chr1 264303223 264303340 -17890324 + L2 LINE L2 3145 3271 -1 23 33 0 0 chr1 264304140 264304170 -17889494 + GC_rich Low_complexity Low_complexity 1 30 0 207 100 0 0 chr1 264305300 264305330 -17888334 + (T)n Simple_repeat Simple_repeat 1 30 0 1871 89 4 0 chr1 264305334 264305571 -17888093 - AluSx SINE Alu -74 238 1 437 156 31 47 chr1 264305834 264305962 -17887702 - MER96B DNA MER1_type? -39 378 253 2454 78 0 7 chr1 264306199 264306508 -17887156 + AluSg SINE Alu 1 307 -3 1938 133 6 38 chr1 264306519 264306835 -17886829 + AluSx SINE Alu 1 306 -6 467 118 0 109 chr1 264306731 264306841 -17886823 + AluSg/x SINE Alu 213 310 0 252 206 11 54 chr1 264306910 264307002 -17886662 + MER96B DNA MER1_type? 304 391 -26 1864 165 0 20 chr1 264307639 264307942 -17885722 + AluJb SINE Alu 1 297 -15 2254 99 0 0 chr1 264307942 264308234 -17885430 + AluSx SINE Alu 21 312 0 214 104 21 21 chr1 264308342 264308390 -17885274 + (TA)n Simple_repeat Simple_repeat 2 49 0 2158 88 60 0 chr1 264308457 264308741 -17884923 - AluSq SINE Alu -12 301 1 234 188 0 0 chr1 264308786 264308834 -17884830 + A-rich Low_complexity Low_complexity 1 48 0 1811 165 115 44 chr1 264309646 264310008 -17883656 + MLT1C LTR MaLR 1 402 -65 1944 88 14 81 chr1 264310008 264310340 -17883324 - AluSx SINE Alu 0 322 11 1811 165 115 44 chr1 264310340 264310412 -17883252 + MLT1C LTR MaLR 402 467 0 1428 102 61 4 chr1 264310829 264311074 -17882590 - L1MA7 LINE L1 -2 6289 6031 459 158 12 0 chr1 264311076 264311158 -17882506 - L1MC1 LINE L1 -259 6074 5992 225 154 0 0 chr1 264311168 264311207 -17882457 + (TA)n Simple_repeat Simple_repeat 2 40 0 349 250 23 0 chr1 264311207 264311295 -17882369 - L1MC4 LINE L1 -1339 6703 6614 676 148 0 0 chr1 264311328 264311429 -17882235 - AluJ/FLAM SINE Alu -210 102 2 3136 157 17 4 chr1 264311436 264311965 -17881699 - L1MC1 LINE L1 -347 5986 5451 2056 123 13 17 chr1 264311967 264312269 -17881395 + AluSq SINE Alu 1 301 -12 781 296 43 11 chr1 264312274 264312551 -17881113 + L1MC4a LINE L1 5629 5914 -1894 29 60 0 0 chr1 264312765 264312815 -17880849 + AT_rich Low_complexity Low_complexity 1 50 0 1910 137 0 25 chr1 264313157 264313441 -17880223 - AluJb SINE Alu -33 279 3 433 280 140 44 chr1 264313551 264313980 -17879684 + L1 LINE L1 2484 2953 -3193 513 141 0 54 chr1 264313980 264314017 -17879647 + Tigger4(Zombi) DNA MER2_type 1 38 -2693 1879 120 0 86 chr1 264314017 264314387 -17879277 + AluSx SINE Alu 1 312 0 513 141 0 54 chr1 264314387 264314441 -17879223 + Tigger4(Zombi) DNA MER2_type 38 87 -2644 * 767 103 22 141 chr1 264314438 264314454 -17879210 + Tigger4(Zombi) DNA MER2_type 2295 2311 -420 2163 110 3 41 chr1 264314454 264314627 -17879037 - AluSx SINE Alu -5 307 150 1990 130 0 53 chr1 264314627 264314950 -17878714 - AluSx SINE Alu -6 306 1 2163 110 3 41 chr1 264314950 264315095 -17878569 - AluSx SINE Alu -162 150 1 767 103 22 141 chr1 264315095 264315263 -17878401 + Tigger4(Zombi) DNA MER2_type 2311 2457 -274 1016 99 0 0 chr1 264315263 264315404 -17878260 + Tigger4(Zombi) DNA MER2_type 2591 2731 0 818 127 0 8 chr1 264315495 264315613 -17878051 + FLAM_C SINE Alu 1 117 -26 2173 25 0 0 chr1 264315623 264315901 -17877763 - AluY SINE Alu 0 320 43 1869 99 0 82 chr1 264315910 264316202 -17877462 - AluSx SINE Alu -44 268 1 37 62 0 0 chr1 264316205 264316270 -17877394 + AT_rich Low_complexity Low_complexity 1 65 0 202 217 17 17 chr1 264316378 264316438 -17877226 + (CCG)n Simple_repeat Simple_repeat 1 60 0 229 224 37 62 chr1 264317554 264317715 -17875949 + L1 LINE L1 3112 3268 -2878 1904 148 28 62 chr1 264317723 264317807 -17875857 + MER7A DNA MER2_type 2 87 -2951 2330 92 10 0 chr1 264317807 264318102 -17875562 - AluSx SINE Alu -14 298 1 1904 148 28 62 chr1 264318102 264318375 -17875289 + MER7A DNA MER2_type 87 345 -1 846 136 0 0 chr1 264318378 264318496 -17875168 - FLAM_C SINE Alu -18 125 8 1155 156 184 39 chr1 264318613 264318869 -17874795 + AluJo SINE Alu 1 293 -9 2481 86 0 0 chr1 264318989 264319302 -17874362 - AluSq SINE Alu 0 313 1 2098 318 82 52 chr1 264319383 264320811 -17872853 - ERVL LTR ERVL -1543 4221 2751 2669 99 23 8 chr1 264320877 264321261 -17872403 + MLT1B LTR MaLR 1 390 0 617 230 158 31 chr1 264321367 264321563 -17872101 - AluSg/x SINE Alu -5 307 87 250 325 25 0 chr1 264321648 264321728 -17871936 - MIR3 SINE MIR -21 187 106 284 173 0 0 chr1 264321810 264321862 -17871802 - Alu SINE Alu 0 302 251 890 175 7 0 chr1 264321862 264321999 -17871665 - FRAM SINE Alu -35 141 4 947 125 0 0 chr1 264322046 264322174 -17871490 - FLAM_C SINE Alu -14 129 2 292 274 153 0 chr1 264322206 264322330 -17871334 - MIR SINE MIR -112 150 8 2497 84 3 0 chr1 264322551 264322860 -17870804 - AluSp SINE Alu -3 310 1 2277 89 16 7 chr1 264323450 264323754 -17869910 + AluSq SINE Alu 2 308 -5 203 339 0 0 chr1 264324057 264324113 -17869551 + L2 LINE L2 3184 3239 -33 736 200 5 13 chr1 264324150 264324375 -17869289 + CT-rich Low_complexity Low_complexity 1 223 0 2100 118 23 13 chr1 264324377 264324683 -17868981 - AluSx SINE Alu -1 311 3 2098 130 0 10 chr1 264325987 264326294 -17867370 - AluSq SINE Alu -9 304 1 1605 155 44 57 chr1 264326318 264326615 -17867049 - AluJo SINE Alu -19 293 1 307 158 122 137 chr1 264327133 264327190 -17866474 - L1MB8 LINE L1 -5 6173 6117 2069 120 0 0 chr1 264327190 264327466 -17866198 + AluSp SINE Alu 1 276 -37 180 0 0 0 chr1 264327471 264327491 -17866173 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 307 158 122 137 chr1 264327491 264327566 -17866098 - L1MB8 LINE L1 -65 6113 6037 256 115 19 0 chr1 264327827 264327879 -17865785 - L1MB4 LINE L1 0 6180 6128 241 245 92 0 chr1 264328324 264328422 -17865242 - MIR SINE MIR -71 191 85 1820 132 49 0 chr1 264328799 264329116 -17864548 - AluSx SINE Alu 0 333 4 238 284 54 14 chr1 264329446 264329520 -17864144 - MER112 DNA MER1_type -12 248 172 2266 105 0 0 chr1 264329552 264329864 -17863800 - AluSx SINE Alu 0 312 1 377 246 228 43 chr1 264329927 264330138 -17863526 + HsTC2a DNA Tc2 43 292 -452 402 215 143 60 chr1 264330186 264330301 -17863363 + HsTC2a DNA Tc2 462 566 -1332 839 181 0 0 chr1 264330301 264330434 -17863230 + FLAM_A SINE Alu 1 133 0 402 215 143 60 chr1 264330434 264330569 -17863095 + HsTC2a DNA Tc2 566 733 -9 248 241 11 58 chr1 264330560 264330647 -17863017 - MER112 DNA MER1_type -169 91 9 * 2116 139 0 3 chr1 264330857 264331159 -17862505 - AluSx SINE Alu -11 301 1 668 203 95 6 chr1 264331161 264331319 -17862345 - MER3 DNA MER1_type -79 130 6 1668 99 5 0 chr1 264331682 264331894 -17861770 + AluSp SINE Alu 1 213 -100 1948 117 0 0 chr1 264331895 264332161 -17861503 + AluSq SINE Alu 42 307 -6 284 351 33 7 chr1 264332237 264332388 -17861276 + L2 LINE L2 2079 2233 -1081 585 255 33 0 chr1 264332831 264332984 -17860680 + L2 LINE L2 2230 2387 -927 399 343 101 9 chr1 264333104 264333442 -17860222 + L2 LINE L2 2358 2726 -588 561 86 0 29 chr1 264333525 264333630 -17860034 + (TTCC)n Simple_repeat Simple_repeat 1 102 0 1845 146 7 37 chr1 264333630 264333924 -17859740 - AluJb SINE Alu -17 295 11 878 216 22 31 chr1 264333929 264334164 -17859500 - MLT1E LTR MaLR -70 523 223 228 292 56 0 chr1 264334297 264334386 -17859278 + L2 LINE L2 2715 2808 -506 348 319 17 121 chr1 264334453 264334638 -17859026 + L2 LINE L2 2981 3125 -147 2164 127 0 6 chr1 264334638 264334953 -17858711 + AluSq SINE Alu 1 313 0 348 319 17 121 chr1 264334953 264335065 -17858599 + L2 LINE L2 3125 3247 -25 1613 193 13 10 chr1 264335090 264335395 -17858269 + AluJb SINE Alu 1 306 -6 2274 112 0 10 chr1 264335481 264335777 -17857887 + AluSx SINE Alu 1 293 -19 2188 123 3 3 chr1 264335873 264336174 -17857490 + AluSx SINE Alu 1 301 -11 1692 173 10 7 chr1 264336565 264336854 -17856810 - AluJb SINE Alu -22 290 1 2300 79 13 13 chr1 264336935 264337240 -17856424 - AluSx SINE Alu -7 305 1 742 266 31 9 chr1 264337419 264337645 -17856019 + MIR SINE MIR 6 236 -26 2227 108 7 3 chr1 264338286 264338583 -17855081 - AluSx SINE Alu -14 298 1 237 83 0 0 chr1 264339655 264339691 -17853973 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2426 75 3 0 chr1 264341587 264341880 -17851784 - AluSp SINE Alu -19 294 1 1642 158 16 26 chr1 264341911 264342214 -17851450 + AluJb SINE Alu 4 303 -9 312 201 112 8 chr1 264343571 264343705 -17849959 - Charlie7 DNA MER1_type -31 2581 2434 962 185 71 24 chr1 264344042 264344296 -17849368 + MER33 DNA MER1_type 58 323 -1 2389 101 0 0 chr1 264344606 264344912 -17848752 - AluSg SINE Alu -4 306 1 3081 146 34 0 chr1 264345204 264345731 -17847933 - L1MB7 LINE L1 -19 6165 5621 23 68 0 0 chr1 264345957 264346001 -17847663 + AT_rich Low_complexity Low_complexity 1 44 0 287 292 95 7 chr1 264347613 264347750 -17845914 + L1ME LINE L1 5488 5636 -485 222 221 107 5 chr1 264349070 264349174 -17844490 - MIR SINE MIR -78 130 7 26 0 0 0 chr1 264350032 264350058 -17843606 + AT_rich Low_complexity Low_complexity 1 26 0 4420 148 41 27 chr1 264350315 264350860 -17842804 + ERVL-D LTR ERVL 4938 5499 -265 1838 155 21 10 chr1 264350860 264351020 -17842644 - AluSx SINE Alu -19 293 127 183 80 0 0 chr1 264351020 264351045 -17842619 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 1838 155 21 10 chr1 264351045 264351174 -17842490 - AluSx SINE Alu -185 127 1 4420 148 41 27 chr1 264351174 264351437 -17842227 + ERVL-D LTR ERVL 5499 5757 -7 2009 152 26 68 chr1 264351437 264351864 -17841800 + MLT2D LTR ERVL 1 409 -5 186 283 57 75 chr1 264352624 264352730 -17840934 - MIR SINE MIR -150 112 9 1854 173 7 10 chr1 264354634 264354934 -17838730 + AluJb SINE Alu 1 299 -13 291 224 209 52 chr1 264354966 264355100 -17838564 - L2 LINE L2 -1 3312 3158 184 309 44 0 chr1 264355688 264355756 -17837908 - L2 LINE L2 -44 3269 3199 293 204 0 0 chr1 264355916 264355965 -17837699 - MER66A LTR ERV1 -140 338 290 305 300 83 0 chr1 264356268 264356388 -17837276 + HAL1 LINE L1 4 133 -2374 1339 246 223 34 chr1 264356433 264357173 -17836491 - HAL1 LINE L1 -1089 1418 539 238 318 156 19 chr1 264357494 264357705 -17835959 + L2 LINE L2 2466 2705 -609 219 299 45 0 chr1 264358007 264358074 -17835590 + L2 LINE L2 3203 3272 0 1774 152 9 48 chr1 264358958 264359274 -17834390 + AluJb SINE Alu 8 311 -1 1030 203 75 81 chr1 264359343 264359688 -17833976 - MER2 DNA MER2_type 0 344 2 2465 72 0 0 chr1 264360980 264361302 -17832362 - AluY SINE Alu 0 322 1 195 162 0 0 chr1 264361508 264361545 -17832119 + A-rich Low_complexity Low_complexity 1 37 0 2138 138 3 0 chr1 264361922 264362226 -17831438 - AluSx SINE Alu -4 308 4 23 42 0 21 chr1 264362274 264362290 -17831374 + AT_rich Low_complexity Low_complexity 1 16 -31 802 183 0 0 chr1 264362290 264362421 -17831243 - FLAM_C SINE Alu -2 131 1 23 42 0 21 chr1 264362421 264362452 -17831212 + AT_rich Low_complexity Low_complexity 16 47 0 385 217 75 17 chr1 264362713 264362833 -17830831 + MER20B DNA MER1_type 638 764 -19 210 37 0 0 chr1 264365940 264365967 -17827697 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 645 207 16 0 chr1 264366152 264366273 -17827391 - FLAM_A SINE Alu -10 123 1 243 0 0 0 chr1 264366872 264366899 -17826765 + (TG)n Simple_repeat Simple_repeat 2 28 0 822 240 73 5 chr1 264366940 264367132 -17826532 + MER3 DNA MER1_type 1 205 -4 450 0 0 0 chr1 264367934 264367984 -17825680 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 191 189 19 0 chr1 264367988 264368041 -17825623 + (TA)n Simple_repeat Simple_repeat 2 55 0 187 31 62 0 chr1 264368494 264368526 -17825138 + A-rich Low_complexity Low_complexity 2 35 0 1477 149 73 49 chr1 264368529 264368817 -17824847 - AluJo SINE Alu -17 295 1 2149 100 11 0 chr1 264368911 264369216 -17824448 + AluSq SINE Alu 2 309 0 191 242 45 30 chr1 264369420 264369486 -17824178 + L2 LINE L2 2987 3053 -219 376 244 295 0 chr1 264369624 264369780 -17823884 - MIR SINE MIR -49 213 12 471 121 157 0 chr1 264370448 264370531 -17823133 + FLAM SINE Alu 38 133 -10 234 170 21 0 chr1 264370550 264370597 -17823067 - MIR SINE MIR -110 152 105 27 81 0 0 chr1 264371607 264371669 -17821995 + GC_rich Low_complexity Low_complexity 1 62 0 41 37 0 37 chr1 264371893 264371974 -17821690 + GC_rich Low_complexity Low_complexity 1 78 0 39 0 0 0 chr1 264372130 264372169 -17821495 + GC_rich Low_complexity Low_complexity 1 39 0 1662 159 25 7 chr1 264374104 264374227 -17819437 + AluJo SINE Alu 1 120 -192 865 68 40 23 chr1 264374227 264374404 -17819260 + (TA)n Simple_repeat Simple_repeat 1 180 0 1662 159 25 7 chr1 264374404 264374557 -17819107 + AluJo SINE Alu 120 282 -30 13519 122 82 16 chr1 264375542 264376840 -17816824 - Tigger1 DNA MER2_type 0 2418 907 2308 86 26 7 chr1 264376840 264377144 -17816520 + AluSq SINE Alu 1 310 -3 13519 122 82 16 chr1 264377144 264378115 -17815549 - Tigger1 DNA MER2_type -1511 907 1 180 0 0 0 chr1 264378946 264378966 -17814698 + (T)n Simple_repeat Simple_repeat 1 20 0 357 192 77 0 chr1 264379164 264379242 -17814422 - MIR SINE MIR -142 120 37 352 239 90 19 chr1 264379507 264379662 -17814002 + Charlie7 DNA MER1_type 2447 2612 0 2091 115 14 3 chr1 264379981 264380267 -17813397 - AluSx SINE Alu -23 289 1 1877 141 7 7 chr1 264380342 264380640 -17813024 - AluSx SINE Alu -14 298 1 2462 64 0 3 chr1 264384619 264384915 -17808749 + AluY SINE Alu 1 295 -16 1735 144 70 11 chr1 264385288 264385573 -17808091 + AluJb SINE Alu 1 302 -10 2349 92 0 7 chr1 264385588 264385891 -17807773 - AluY SINE Alu -10 301 1 197 250 60 12 chr1 264385921 264386005 -17807659 + L2 LINE L2 3160 3247 -25 2282 116 0 0 chr1 264387266 264387569 -17806095 - AluSx SINE Alu -9 303 1 1522 179 53 3 chr1 264387998 264388283 -17805381 + AluJb SINE Alu 1 299 -13 221 263 179 0 chr1 264388587 264388682 -17804982 - MIR SINE MIR -63 145 34 2297 129 30 99 chr1 264389033 264389499 -17804165 - Tigger2a DNA MER2_type 0 434 1 193 292 22 22 chr1 264390682 264390771 -17802893 - L2 LINE L2 -218 3054 2966 2213 104 3 3 chr1 264391260 264391557 -17802107 + AluSx SINE Alu 1 297 -15 768 283 0 0 chr1 264392548 264392721 -17800943 - FAM SINE Alu -2 173 1 1910 123 40 31 chr1 264394280 264394606 -17799058 + MER46B DNA MER2_type 32 235 -1 315 270 60 0 chr1 264394842 264394942 -17798722 - MIR SINE MIR -78 184 79 1712 170 44 38 chr1 264395055 264395396 -17798268 - MER7A DNA MER2_type -5 341 1 525 211 191 77 chr1 264396020 264396214 -17797450 - MIR SINE MIR -40 222 7 876 225 30 0 chr1 264396423 264396623 -17797041 + MER3 DNA MER1_type 1 206 -3 2127 131 0 0 chr1 264396690 264396987 -17796677 - AluSx SINE Alu -15 297 1 23 0 0 0 chr1 264397711 264397734 -17795930 + AT_rich Low_complexity Low_complexity 1 23 0 191 323 48 0 chr1 264397863 264397925 -17795739 - L2 LINE L2 -63 3209 3145 2372 106 0 0 chr1 264398156 264398467 -17795197 + AluSx SINE Alu 1 311 -1 305 292 62 14 chr1 264398880 264399024 -17794640 + MER117 DNA MER1_type 7 157 -40 675 260 62 41 chr1 264399545 264399787 -17793877 - L1ME1 LINE L1 -5 6161 5915 216 0 0 0 chr1 264400193 264400217 -17793447 + (T)n Simple_repeat Simple_repeat 1 24 0 1440 184 4 0 chr1 264400764 264401008 -17792656 - AluJo SINE Alu -27 285 41 2209 119 3 0 chr1 264401496 264401790 -17791874 - AluSq SINE Alu -18 295 1 439 198 12 0 chr1 264403127 264403213 -17790451 - Tigger5 DNA MER2_type 0 2323 2237 231 143 0 24 chr1 264403212 264403254 -17790410 - Tigger5 DNA MER2_type -32 2291 2251 * 268 89 0 44 chr1 264403222 264403267 -17790397 - Tigger5 DNA MER2_type -2268 55 13 292 263 0 13 chr1 264403267 264403343 -17790321 - Tigger5 DNA MER2_type 0 2323 2249 267 220 0 0 chr1 264403330 264403380 -17790284 - Tigger5 DNA MER2_type -2273 50 1 * 518 209 0 18 chr1 264403640 264403750 -17789914 + MIR SINE MIR 13 120 -142 460 218 16 40 chr1 264404287 264404411 -17789253 - L1MB3 LINE L1 -12 6171 6051 21 0 0 0 chr1 264405199 264405220 -17788444 + AT_rich Low_complexity Low_complexity 1 21 0 554 285 134 28 chr1 264406232 264406761 -17786903 - L1ME4a LINE L1 -2 6119 5535 214 194 60 60 chr1 264408187 264408254 -17785410 - L2 LINE L2 -86 3227 3161 1996 133 6 19 chr1 264408765 264409081 -17784583 - AluJo SINE Alu 0 312 1 1529 156 28 0 chr1 264409737 264409987 -17783677 - AluJo SINE Alu -55 257 1 2202 125 0 7 chr1 264411550 264411855 -17781809 - AluSx SINE Alu -9 303 1 494 299 35 50 chr1 264411873 264412134 -17781530 + L2 LINE L2 3057 3313 0 430 348 97 0 chr1 264414075 264414230 -17779434 + MER91A DNA MER1_type 1 170 -26 2306 133 30 25 chr1 264414283 264414645 -17779019 - THE1B LTR MaLR 0 364 1 329 265 12 0 chr1 264415148 264415231 -17778433 + MIR SINE MIR 70 153 -109 251 287 46 37 chr1 264415548 264415656 -17778008 + MIR SINE MIR 153 261 -1 447 317 29 41 chr1 264416041 264416284 -17777380 + MIR SINE MIR 2 241 -21 22 0 0 0 chr1 264416285 264416307 -17777357 + AT_rich Low_complexity Low_complexity 1 22 0 350 295 97 19 chr1 264416316 264416436 -17777228 - L1MC4 LINE L1 0 8042 7933 306 0 0 0 chr1 264416436 264416470 -17777194 + (CA)n Simple_repeat Simple_repeat 2 35 0 350 295 97 19 chr1 264416470 264416668 -17776996 - L1MC4 LINE L1 -109 7933 7699 360 250 134 47 chr1 264416795 264416866 -17776798 + L1MC5 LINE L1 7261 7324 -637 1007 186 82 60 chr1 264416866 264417015 -17776649 + MER33 DNA MER1_type 1 145 -2440 2211 114 0 3 chr1 264417015 264417314 -17776350 - AluSx SINE Alu -14 298 1 1007 186 82 60 chr1 264417314 264417451 -17776213 + MER33 DNA MER1_type 145 297 -2288 1554 154 88 28 chr1 264417451 264417736 -17775928 - AluJo SINE Alu -10 302 1 1007 186 82 60 chr1 264417736 264417765 -17775899 + MER33 DNA MER1_type 297 324 0 360 250 134 47 chr1 264417765 264417969 -17775695 + L1MC5 LINE L1 7324 7560 -401 297 75 0 0 chr1 264418490 264418530 -17775134 + (GAAAA)n Simple_repeat Simple_repeat 2 41 0 712 228 235 17 chr1 264419891 264420189 -17773475 + MLT1J LTR MaLR 31 393 -118 1091 407 71 0 chr1 264420365 264420888 -17772776 + REP3 LTR ERV 1 560 -2 2702 39 0 3 chr1 264420904 264421216 -17772448 + AluY SINE Alu 1 311 0 307 248 32 80 chr1 264421261 264421386 -17772278 + MLT1I LTR MaLR 283 401 -8 265 247 14 14 chr1 264421440 264421513 -17772151 + MLT1J LTR MaLR 409 481 -30 605 175 0 7 chr1 264421777 264421920 -17771744 + (TCCA)n Simple_repeat Simple_repeat 1 142 0 182 250 0 67 chr1 264421920 264421980 -17771684 - L2 LINE L2 -78 3235 3180 538 217 42 0 chr1 264422322 264422442 -17771222 - L2 LINE L2 0 3313 3189 2122 112 17 14 chr1 264422584 264422880 -17770784 - AluSg SINE Alu -13 297 1 1767 152 59 3 chr1 264423935 264424225 -17769439 - AluJb SINE Alu -6 306 1 330 98 0 0 chr1 264424367 264424418 -17769246 + (CA)n Simple_repeat Simple_repeat 2 52 0 2203 87 3 21 chr1 264424866 264425153 -17768511 - AluSx SINE Alu -30 282 1 689 162 7 0 chr1 264425307 264425461 -17768203 + CT-rich Low_complexity Low_complexity 4 158 0 2094 128 7 3 chr1 264425478 264425768 -17767896 - AluSx SINE Alu -19 293 3 267 333 40 0 chr1 264425770 264425896 -17767768 + MIR SINE MIR 106 236 -26 474 188 0 10 chr1 264426254 264426350 -17767314 + L1M3 LINE L1 5466 5560 -620 7361 215 32 83 chr1 264426745 264428702 -17764962 - L1M3 LINE L1 -603 6075 4020 2333 101 0 7 chr1 264428702 264429009 -17764655 - AluSc SINE Alu -3 306 2 7361 215 32 83 chr1 264429009 264429911 -17763753 - L1M3 LINE L1 -2658 4020 3378 2351 85 0 3 chr1 264429911 264430204 -17763460 + AluY SINE Alu 1 292 -19 7361 215 32 83 chr1 264430204 264430320 -17763344 - L1M3 LINE L1 -3300 3378 3258 3501 197 34 89 chr1 264430312 264430504 -17763160 - L1M3 LINE L1 -4649 1997 1796 * 1949 149 36 0 chr1 264430504 264430805 -17762859 - AluSx SINE Alu 0 312 1 3501 197 34 89 chr1 264430805 264430936 -17762728 - L1M3 LINE L1 -4850 1796 1659 2254 110 17 0 chr1 264430936 264431235 -17762429 - AluSc SINE Alu -5 304 1 3501 197 34 89 chr1 264431235 264431726 -17761938 - L1M3 LINE L1 -4987 1659 1143 901 215 6 0 chr1 264431726 264431889 -17761775 - FRAM SINE Alu -2 164 1 3501 197 34 89 chr1 264431889 264432544 -17761120 - L1M3 LINE L1 -5503 1143 611 2040 144 10 0 chr1 264435279 264435571 -17758093 - AluSx SINE Alu -17 295 1 2108 101 21 10 chr1 264436033 264436321 -17757343 + AluSc SINE Alu 1 291 -18 2212 107 0 0 chr1 264436927 264437235 -17756429 + AluSx SINE Alu 1 308 0 2149 75 18 22 chr1 264438655 264438965 -17754699 - AluSx SINE Alu 0 317 9 623 168 0 0 chr1 264439034 264439129 -17754535 + AluSg/x SINE Alu 198 292 -18 423 276 44 64 chr1 264439306 264439630 -17754034 - LTR24C LTR ERV1 0 635 245 360 226 19 75 chr1 264439700 264439806 -17753858 - LTR24B LTR ERV1 -365 100 1 180 278 188 49 chr1 264439994 264440210 -17753454 - L2 LINE L2 -5 3267 3006 1715 191 3 3 chr1 264440210 264440509 -17753155 - AluJo SINE Alu -13 299 1 180 278 188 49 chr1 264440509 264440558 -17753106 - L2 LINE L2 -266 3006 2965 2361 106 0 0 chr1 264440856 264441159 -17752505 - AluSx SINE Alu -9 303 1 181 258 16 32 chr1 264442157 264442219 -17751445 + MIR SINE MIR 29 89 -119 237 363 63 16 chr1 264443479 264443669 -17749995 + MIR SINE MIR 52 250 -12 2541 170 46 27 chr1 264444668 264445216 -17748448 + MER74A LTR ERVL 1 558 0 4298 163 99 18 chr1 264445244 264445264 -17748400 - MER21B LTR ERV1 -1 862 845 3550 51 2 15 chr1 264445264 264445718 -17747946 + LTR7 LTR ERV1 1 448 -2 4298 163 99 18 chr1 264445718 264446494 -17747170 - MER21B LTR ERV1 -18 845 1 461 267 17 57 chr1 264446633 264446809 -17746855 - L2 LINE L2 -33 3280 3112 234 279 144 0 chr1 264446886 264446990 -17746674 - MIR SINE MIR -92 170 52 1103 161 0 0 chr1 264447087 264447248 -17746416 + AluJb SINE Alu 137 297 -15 2038 124 31 0 chr1 264447250 264447540 -17746124 + AluSg SINE Alu 1 299 -11 1081 111 96 20 chr1 264447540 264447739 -17745925 - Tigger2 DNA MER2_type -232 2486 2273 412 186 0 14 chr1 264447729 264447799 -17745865 - Tigger2 DNA MER2_type -2649 69 1 * 409 171 0 0 chr1 264447918 264447988 -17745676 + MIR SINE MIR 49 118 -144 346 237 203 0 chr1 264449565 264449683 -17743981 + L1MCc LINE L1 30 171 -6252 571 238 138 42 chr1 264449794 264449983 -17743681 + MLT1E2 LTR MaLR 103 309 -317 909 290 76 6 chr1 264449993 264450348 -17743316 + L1MCc LINE L1 3037 3416 -3525 245 215 231 0 chr1 264450351 264450416 -17743248 + MLT1F LTR MaLR 1 80 -462 25 83 0 0 chr1 264450434 264450494 -17743170 + AT_rich Low_complexity Low_complexity 1 60 0 792 174 0 0 chr1 264450505 264450626 -17743038 - FLAM_A SINE Alu -10 123 3 345 230 15 82 chr1 264450660 264450770 -17742894 - L1MEd LINE L1 -5081 1038 937 1841 133 29 52 chr1 264450770 264451078 -17742586 + AluSx SINE Alu 1 301 -11 345 230 15 82 chr1 264451078 264451102 -17742562 - L1MEd LINE L1 -5182 937 913 634 304 76 46 chr1 264451115 264451365 -17742299 - L1MEd LINE L1 -5260 859 618 2389 102 0 0 chr1 264451365 264451670 -17741994 - AluSq SINE Alu -8 305 1 634 304 76 46 chr1 264451670 264451945 -17741719 - L1MEd LINE L1 -5501 618 318 451 140 139 12 chr1 264452004 264452106 -17741558 - L1MC3 LINE L1 -7 7801 7664 466 75 0 0 chr1 264452131 264452198 -17741466 - AluSp/q SINE Alu -3 310 244 1461 84 0 0 chr1 264452198 264452377 -17741287 - AluSx SINE Alu -133 179 1 225 0 0 0 chr1 264452381 264452406 -17741258 + (TTCCC)n Simple_repeat Simple_repeat 3 27 0 1182 130 16 5 chr1 264452447 264452632 -17741032 - L1PB1 LINE L1 -36 6115 5929 247 292 106 16 chr1 264452769 264452951 -17740713 - L1MC4a LINE L1 0 7808 7644 213 77 0 51 chr1 264453012 264453051 -17740613 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 215 244 12 23 chr1 264453566 264453652 -17740012 + CT-rich Low_complexity Low_complexity 1 85 0 257 287 109 0 chr1 264454350 264454451 -17739213 - L1MC/D LINE L1 -2120 5688 5577 1684 249 43 35 chr1 264454480 264454604 -17739060 - L1ME1 LINE L1 -18 6148 6027 2339 105 0 3 chr1 264454604 264454908 -17738756 + AluSq SINE Alu 1 303 -10 1684 249 43 35 chr1 264454908 264455004 -17738660 - L1ME1 LINE L1 -139 6027 5933 5904 141 21 48 chr1 264455004 264456105 -17737559 + MER11C LTR ERVK 1 1071 0 1684 249 43 35 chr1 264456105 264456369 -17737295 - L1ME1 LINE L1 -233 5933 5659 388 81 30 162 chr1 264456388 264456487 -17737177 + L1MA4A LINE L1 6198 6283 -20 33 66 0 0 chr1 264456531 264456592 -17737072 + AT_rich Low_complexity Low_complexity 1 61 0 724 221 5 32 chr1 264456592 264456617 -17737047 - L1ME1 LINE L1 -531 5635 5611 324 0 0 0 chr1 264456617 264456653 -17737011 + (CA)n Simple_repeat Simple_repeat 1 36 0 724 221 5 32 chr1 264456653 264456820 -17736844 - L1ME1 LINE L1 -555 5611 5444 382 269 42 8 chr1 264457002 264457121 -17736543 + MER103 DNA DNA 44 166 0 358 309 125 12 chr1 264458505 264458673 -17734991 + MER5A DNA MER1_type 3 189 0 1821 298 61 40 chr1 264458948 264460034 -17733630 + L1MEc LINE L1 86 1193 -5203 1657 239 67 66 chr1 264460042 264460627 -17733037 + L1MEc LINE L1 1284 1867 -4529 7700 135 37 2 chr1 264460627 264461816 -17731848 - Tigger3b DNA MER2_type -1 1230 1 1657 239 67 66 chr1 264461816 264461920 -17731744 + L1MEc LINE L1 1867 1977 -4419 2316 93 3 0 chr1 264461920 264462220 -17731444 - AluSx SINE Alu -11 301 1 1657 239 67 66 chr1 264462220 264462257 -17731407 + L1MEc LINE L1 1977 2012 -4384 878 167 0 12 chr1 264462259 264462421 -17731243 - FAM SINE Alu -4 45 1 1939 222 40 15 chr1 264462429 264463110 -17730554 + L1MEc LINE L1 2036 2690 -3525 1280 176 117 69 chr1 264463422 264463885 -17729779 + MER66A LTR ERV1 97 478 0 227 245 38 75 chr1 264464826 264464932 -17728732 - L1MC/D LINE L1 -2008 5800 5699 694 280 58 46 chr1 264465130 264465549 -17728115 - MLT1K LTR MaLR 0 588 149 2275 58 7 14 chr1 264465622 264465916 -17727748 - AluY SINE Alu 0 311 20 3867 141 34 42 chr1 264465968 264466607 -17727057 - MER51A LTR ERV1 0 634 1 396 273 47 39 chr1 264466655 264466783 -17726881 + L2 LINE L2 3136 3264 -8 348 315 0 9 chr1 264466783 264466891 -17726773 - L1MC/D LINE L1 -470 5651 5545 558 174 165 26 chr1 264467025 264467039 -17726625 - AluJo SINE Alu -178 134 123 207 0 0 0 chr1 264467039 264467062 -17726602 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 558 174 165 26 chr1 264467062 264467162 -17726502 - AluJo SINE Alu -189 123 4 1466 151 115 32 chr1 264467265 264467544 -17726120 - AluJo SINE Alu -10 302 1 849 171 0 8 chr1 264467547 264467676 -17725988 - AluJo/FLAM SINE Alu -180 132 5 1281 158 0 27 chr1 264467781 264468002 -17725662 - AluJo SINE Alu -8 304 90 3025 173 14 6 chr1 264468021 264468614 -17725050 - L1MB2 LINE L1 -7 6164 5477 2048 143 3 0 chr1 264468622 264468916 -17724748 - AluSx SINE Alu -17 295 1 1364 278 113 29 chr1 264468917 264469475 -17724189 - Tigger8 DNA MER2_type -54 612 8 7104 219 27 24 chr1 264470062 264470955 -17722709 + L1MB3 LINE L1 3611 4513 -1633 1870 173 81 0 chr1 264470955 264471290 -17722374 + MLT1A1 LTR MaLR 4 365 0 7104 219 27 24 chr1 264471290 264472109 -17721555 + L1MB3 LINE L1 4513 5328 -818 2157 129 28 147 chr1 264472103 264472487 -17721177 + L1MB3 LINE L1 5686 5983 -200 * 2037 124 7 0 chr1 264472487 264472770 -17720894 - AluSx SINE Alu -19 293 9 2157 129 28 147 chr1 264472770 264472950 -17720714 + L1MB3 LINE L1 5983 6183 0 271 270 135 36 chr1 264473162 264473273 -17720391 + L2 LINE L2 3192 3313 0 1456 167 4 45 chr1 264473367 264473613 -17720051 - MER46A DNA MER2_type 0 236 1 1759 213 82 47 chr1 264473637 264474150 -17719514 + MER21B LTR ERV1 293 823 -40 516 256 78 11 chr1 264474575 264474766 -17718898 + L1ME LINE L1 5619 5822 -299 1598 174 36 14 chr1 264474823 264475104 -17718560 + AluJo SINE Alu 5 291 -21 395 69 375 0 chr1 264475113 264475185 -17718479 + L1PA7 LINE L1 6056 6154 0 423 304 144 5 chr1 264476130 264476331 -17717333 - MIR SINE MIR 0 262 34 438 20 0 0 chr1 264476810 264476861 -17716803 + (TG)n Simple_repeat Simple_repeat 2 52 0 462 261 119 0 chr1 264477140 264477274 -17716390 - MIR SINE MIR -111 151 2 348 277 66 15 chr1 264478390 264478527 -17715137 - MIR SINE MIR -2 260 117 3653 154 25 35 chr1 264478771 264479094 -17714570 - L1MB3 LINE L1 -34 6149 5824 2291 115 0 3 chr1 264479094 264479407 -17714257 - AluSx SINE Alu 0 312 1 3653 154 25 35 chr1 264479407 264479803 -17713861 - L1MB3 LINE L1 -359 5824 5437 277 191 0 0 chr1 264479937 264479984 -17713680 - MIR SINE MIR -64 144 98 5058 140 55 32 chr1 264481619 264482613 -17711051 + pTR5 LTR ERV1 742 1866 -572 3949 239 23 15 chr1 264482729 264482949 -17710715 + L1MB3 LINE L1 4281 4498 -1648 1870 173 81 0 chr1 264482949 264483284 -17710380 + MLT1A1 LTR MaLR 4 365 0 3949 239 23 15 chr1 264483284 264484103 -17709561 + L1MB3 LINE L1 4498 5328 -818 2157 129 28 147 chr1 264484097 264484481 -17709183 + L1MB3 LINE L1 5686 5983 -200 * 2037 124 7 0 chr1 264484481 264484764 -17708900 - AluSx SINE Alu -19 293 9 2157 129 28 147 chr1 264484764 264484944 -17708720 + L1MB3 LINE L1 5983 6183 0 271 270 135 36 chr1 264485156 264485267 -17708397 + L2 LINE L2 3192 3313 0 785 195 69 0 chr1 264485327 264485486 -17708178 - MER5A DNA MER1_type -19 170 1 447 329 71 6 chr1 264485617 264485787 -17707877 + MIR SINE MIR 10 190 -72 213 314 22 58 chr1 264486900 264487037 -17706627 - MIR SINE MIR -75 187 56 272 281 0 0 chr1 264487144 264487208 -17706456 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 914 98 0 0 chr1 264487315 264487437 -17706227 + AluSp/q SINE Alu 188 309 -4 1318 159 122 33 chr1 264488610 264488880 -17704784 - AluJo SINE Alu -18 294 1 1067 137 6 0 chr1 264488888 264489049 -17704615 - AluSg/x SINE Alu -5 307 146 765 246 118 30 chr1 264489690 264490020 -17703644 + LTR16A LTR ERVL 83 441 -9 456 35 0 0 chr1 264490152 264490210 -17703454 + (TG)n Simple_repeat Simple_repeat 2 59 0 6720 232 50 48 chr1 264492214 264493548 -17700116 + L1M4 LINE L1 30 1360 -5286 2076 123 3 3 chr1 264493548 264493867 -17699797 + AluSx SINE Alu 1 319 0 6720 232 50 48 chr1 264493867 264494852 -17698812 + L1M4 LINE L1 1360 2342 -4304 291 54 0 0 chr1 264494852 264494889 -17698775 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 8101 25 3 0 chr1 264494889 264496340 -17697324 - L1PA4 LINE L1 -16 6139 4689 6720 232 50 48 chr1 264496340 264496606 -17697058 + L1M4 LINE L1 2342 2637 -4009 1556 147 4 13 chr1 264496606 264496844 -17696820 - MER46A DNA MER2_type 0 236 1 6720 232 50 48 chr1 264496844 264496916 -17696748 + L1M4 LINE L1 2637 2707 -3939 556 165 34 19 chr1 264496923 264497164 -17696500 + AluJ SINE Alu 1 294 -18 1722 211 9 6 chr1 264497168 264497569 -17696095 + L1M4 LINE L1 2704 3105 -3539 2149 100 0 10 chr1 264498068 264498359 -17695305 - THE1B LTR MaLR -76 288 1 182 256 44 33 chr1 264498755 264498845 -17694819 - MIR SINE MIR -40 222 132 337 307 0 30 chr1 264498856 264498957 -17694707 - MER5A DNA MER1_type -1 188 91 1239 191 62 27 chr1 264498985 264499241 -17694423 - AluJo SINE Alu -10 302 38 818 274 60 29 chr1 264499569 264499850 -17693814 + L1MC/D LINE L1 5410 5699 -2109 2599 222 86 104 chr1 264499984 264501620 -17692044 + L1MC5 LINE L1 6113 7718 -243 935 174 45 0 chr1 264501620 264501775 -17691889 + MER58A DNA MER1_type 1 162 0 617 213 34 53 chr1 264501794 264502001 -17691663 + L1MC5 LINE L1 7709 7911 -50 232 277 45 36 chr1 264502019 264502131 -17691533 + L1MC/D LINE L1 5819 5931 -1877 18261 193 27 17 chr1 264502323 264507296 -17686368 - L1PA15 LINE L1 -5 6811 1733 2391 78 3 0 chr1 264507296 264507590 -17686074 + AluY SINE Alu 3 297 -14 18261 193 27 17 chr1 264507590 264508147 -17685517 - L1PA15 LINE L1 -5083 1733 1183 6063 128 42 24 chr1 264508193 264508823 -17684841 + L1MA8 LINE L1 4949 5566 -725 1949 109 29 0 chr1 264508823 264509131 -17684533 + AluSq SINE Alu 1 316 0 6063 128 42 24 chr1 264509131 264509564 -17684100 + L1MA8 LINE L1 5566 6054 -237 2298 98 0 0 chr1 264509564 264509871 -17683793 + AluSc SINE Alu 1 307 -2 6063 128 42 24 chr1 264509871 264510104 -17683560 + L1MA8 LINE L1 6054 6281 -10 23 78 0 0 chr1 264510104 264510155 -17683509 + AT_rich Low_complexity Low_complexity 1 51 0 437 289 13 40 chr1 264510275 264510427 -17683237 + LTR67 LTR ERVL 9 156 -401 258 81 0 0 chr1 264510810 264510847 -17682817 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 247 184 0 0 chr1 264510853 264510891 -17682773 + U6 snRNA snRNA 1 38 -69 203 381 8 17 chr1 264511005 264511123 -17682541 - MIR3 SINE MIR -87 121 5 391 204 61 0 chr1 264511284 264511382 -17682282 + L1MA4 LINE L1 6017 6120 -180 582 230 5 11 chr1 264511418 264511609 -17682055 + L1MA4 LINE L1 6110 6299 -1 222 91 0 0 chr1 264514868 264514901 -17678763 + (CA)n Simple_repeat Simple_repeat 1 33 0 280 275 0 162 chr1 264515925 264516015 -17677649 + L2 LINE L2 3195 3255 -58 1772 153 80 6 chr1 264516015 264516354 -17677310 - MLT1A1 LTR MaLR 0 365 2 280 275 0 162 chr1 264516354 264516405 -17677259 + L2 LINE L2 3255 3313 0 572 293 29 29 chr1 264516671 264516876 -17676788 - MIR SINE MIR -55 207 3 508 267 28 40 chr1 264517387 264517563 -17676101 - MLT1J2 LTR MaLR -5 445 272 525 270 108 22 chr1 264517580 264517765 -17675899 - MLT1J2 LTR MaLR -59 391 191 511 180 41 57 chr1 264517791 264517913 -17675751 - MLT1J2 LTR MaLR -315 135 16 1002 295 13 36 chr1 264517932 264518319 -17675345 - MLT1J LTR MaLR 0 511 134 372 197 0 0 chr1 264519393 264519454 -17674210 - MER45 DNA AcHobo 0 1581 1521 388 241 0 0 chr1 264519482 264519561 -17674103 - MLT2F LTR ERVL -372 291 213 273 98 0 0 chr1 264519564 264519605 -17674059 + (ATG)n Simple_repeat Simple_repeat 1 41 0 234 0 0 0 chr1 264519605 264519631 -17674033 + (TG)n Simple_repeat Simple_repeat 1 26 0 588 213 43 7 chr1 264519635 264519776 -17673888 - MLT2F LTR ERVL -517 146 1 514 273 35 17 chr1 264520007 264520179 -17673485 - MLT1J LTR MaLR -11 500 326 674 208 127 0 chr1 264520232 264520405 -17673259 - MLT1J LTR MaLR -302 209 15 274 242 76 0 chr1 264520927 264520993 -17672671 - MIR3 SINE MIR -41 167 97 1487 180 9 102 chr1 264521747 264522080 -17671584 - AluJo SINE Alu 0 302 1 1919 120 20 7 chr1 264522340 264522640 -17671024 + AluJb SINE Alu 5 308 -4 443 255 98 2 chr1 264523219 264523364 -17670300 + MLT1I LTR MaLR 69 225 -184 393 176 14 0 chr1 264523427 264523501 -17670163 + MLT1I LTR MaLR 335 409 0 3325 218 68 23 chr1 264523510 264524651 -17669013 - L1P4 LINE L1 -547 5616 4421 5085 191 62 14 chr1 264524671 264526615 -17667049 - L1MB3 LINE L1 0 6183 4136 202 327 141 6 chr1 264527481 264527637 -17666027 - MIR SINE MIR -2 260 84 294 287 69 0 chr1 264528042 264528129 -17665535 + MIR SINE MIR 59 151 -111 1529 61 0 52 chr1 264528398 264528611 -17665053 - L1PA8 LINE L1 0 6172 5971 488 302 87 101 chr1 264528803 264529622 -17664042 - L2 LINE L2 -27 3245 2438 2254 110 0 0 chr1 264529622 264529932 -17663732 + AluSx SINE Alu 1 310 -2 488 302 87 101 chr1 264529932 264530166 -17663498 - L2 LINE L2 -834 2438 2202 31 44 0 0 chr1 264530231 264530276 -17663388 + AT_rich Low_complexity Low_complexity 1 45 0 2285 147 11 0 chr1 264530276 264530637 -17663027 - L1PA16 LINE L1 -20 6146 5782 1844 157 0 3 chr1 264530646 264530945 -17662719 - AluJb SINE Alu -14 298 1 890 152 0 32 chr1 264530954 264531112 -17662552 - AluJo SINE Alu -21 291 139 202 214 0 0 chr1 264531165 264531207 -17662457 + (TG)n Simple_repeat Simple_repeat 1 42 0 341 337 43 14 chr1 264532528 264532678 -17660986 - MIR SINE MIR -61 147 20 953 116 0 0 chr1 264532700 264532829 -17660835 - AluJo SINE Alu -169 133 5 5201 107 18 31 chr1 264533995 264534835 -17658829 + L1PB4 LINE L1 5326 6154 -2 2435 69 0 0 chr1 264534838 264535143 -17658521 + AluY SINE Alu 1 305 -6 399 255 10 10 chr1 264535181 264535283 -17658381 + MER103 DNA DNA 20 121 -45 309 267 11 44 chr1 264536374 264536464 -17657200 - MIR3 SINE MIR -28 180 94 529 256 79 113 chr1 264536477 264536957 -17656707 + MLT1J LTR MaLR 3 466 -45 2216 184 49 5 chr1 264537506 264537914 -17655750 + MSTB LTR MaLR 1 426 0 771 129 24 24 chr1 264538786 264538910 -17654754 + FLAM_A SINE Alu 1 124 -9 584 271 90 82 chr1 264539802 264540190 -17653474 - MLT1J LTR MaLR -2 509 119 1858 132 138 15 chr1 264540323 264540648 -17653016 + MLT1A1 LTR MaLR 1 365 0 807 212 36 0 chr1 264540965 264541130 -17652534 + FAM SINE Alu 2 172 -3 312 281 72 33 chr1 264541430 264541583 -17652081 - MIR3 SINE MIR -15 193 35 2063 161 31 43 chr1 264542731 264543147 -17650517 - MLT2D LTR ERVL -3 411 1 621 202 0 0 chr1 264543147 264543256 -17650408 + FLAM_A SINE Alu 1 109 -33 965 174 25 72 chr1 264543460 264543695 -17649969 + AluJo SINE Alu 77 300 -12 2449 184 2 18 chr1 264544710 264545145 -17648519 - MSTC LTR MaLR 0 428 1 339 299 81 58 chr1 264545670 264546191 -17647473 - L2 LINE L2 -970 2344 1812 2843 109 99 0 chr1 264547462 264547904 -17645760 - LTR19A LTR ERV1 0 486 1 746 193 8 8 chr1 264548147 264548668 -17644996 + (TG)n Simple_repeat Simple_repeat 1 521 0 980 174 0 0 chr1 264548808 264548963 -17644701 + FRAM SINE Alu 1 155 -11 6700 84 12 8 chr1 264548973 264550339 -17643325 + L1PA11 LINE L1 4803 6172 -2 5027 42 0 2 chr1 264550757 264551349 -17642315 + LTR10C LTR ERV1 1 591 0 459 0 0 0 chr1 264553272 264553323 -17640341 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1948 112 0 4 chr1 264553325 264553602 -17640062 - AluSx SINE Alu -36 276 1 1644 178 11 0 chr1 264554233 264554520 -17639144 + AluJb SINE Alu 1 290 -22 201 114 23 23 chr1 264554620 264554664 -17639000 + (CA)n Simple_repeat Simple_repeat 1 44 0 212 244 0 0 chr1 264556549 264556594 -17637070 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 225 231 0 77 chr1 264556594 264556659 -17637005 - L2 LINE L2 0 3313 3254 2117 143 119 10 chr1 264556693 264557079 -17636585 + MSTA LTR MaLR 1 428 0 1740 283 125 31 chr1 264557165 264558597 -17635067 - L2 LINE L2 -76 3237 1672 212 0 36 0 chr1 264559074 264559102 -17634562 + (CA)n Simple_repeat Simple_repeat 2 30 0 2301 92 0 16 chr1 264560706 264561011 -17632653 + AluSx SINE Alu 1 300 -12 628 266 19 34 chr1 264561914 264562121 -17631543 - MIR SINE MIR -6 256 53 446 298 67 11 chr1 264562730 264562908 -17630756 - MIR SINE MIR -28 234 47 411 289 10 70 chr1 264562918 264563119 -17630545 - MLT1J LTR MaLR 0 511 323 237 271 82 57 chr1 264563239 264563361 -17630303 - MLT1J LTR MaLR -344 167 43 227 267 204 23 chr1 264563676 264563852 -17629812 - L1ME4a LINE L1 -35 6086 5879 183 42 0 0 chr1 264565308 264565332 -17628332 + (TG)n Simple_repeat Simple_repeat 1 24 0 1903 145 3 11 chr1 264565332 264565615 -17628049 - AluSx SINE Alu -31 281 1 376 182 36 64 chr1 264566030 264566140 -17627524 - MIR SINE MIR -39 223 117 588 322 31 14 chr1 264566142 264566617 -17627047 + LTR33 LTR ERVL 1 518 -3 379 233 12 0 chr1 264566642 264566728 -17626936 - MIR SINE MIR -164 98 12 204 355 99 0 chr1 264566744 264566865 -17626799 + MIR SINE MIR 20 152 -56 191 259 0 19 chr1 264567684 264567738 -17625926 + L3 LINE CR1 884 936 -641 206 356 110 8 chr1 264567757 264567875 -17625789 - MIR SINE MIR -128 134 5 284 271 52 62 chr1 264567884 264567980 -17625684 + MER5A DNA MER1_type 35 139 -49 355 289 20 20 chr1 264567995 264568144 -17625520 + L1MC5 LINE L1 7743 7891 -70 264 274 0 0 chr1 264568687 264568749 -17624915 + MIR SINE MIR 93 154 -108 2118 125 55 14 chr1 264568751 264569095 -17624569 + MER46B DNA MER2_type 4 236 0 394 217 65 22 chr1 264569317 264569409 -17624255 + LTR16C LTR ERVL 83 178 -313 761 242 41 14 chr1 264569463 264569682 -17623982 + LTR16C LTR ERVL 267 491 0 384 206 14 0 chr1 264570091 264570164 -17623500 + LTR16C LTR ERVL 418 491 0 834 221 215 33 chr1 264570380 264570710 -17622954 + LTR50 LTR ERVL 44 433 -362 569 216 165 16 chr1 264570712 264570789 -17622875 + LTR50 LTR ERVL 573 637 -158 502 259 9 0 chr1 264570789 264570901 -17622763 + MER81 DNA DNA 2 114 0 569 216 165 16 chr1 264570901 264571017 -17622647 + LTR50 LTR ERVL 637 795 0 488 352 65 9 chr1 264571407 264571637 -17622027 + HERV16 LTR ERVL 410 652 -4344 915 210 98 5 chr1 264571761 264571966 -17621698 - MER58A DNA MER1_type 0 224 1 453 307 121 22 chr1 264572106 264572337 -17621327 + HERV16 LTR ERVL 958 1211 -3785 830 305 45 7 chr1 264572483 264572910 -17620754 + HERV16 LTR ERVL 1453 1892 -3104 1345 333 90 31 chr1 264573002 264573449 -17620215 + HERV16 LTR ERVL 2039 2458 -3196 381 22 0 0 chr1 264573449 264573495 -17620169 + (TC)n Simple_repeat Simple_repeat 1 46 0 2096 115 0 11 chr1 264573496 264573783 -17619881 - AluSx SINE Alu -28 284 1 1345 333 90 31 chr1 264573783 264574277 -17619387 + HERV16 LTR ERVL 2457 3076 -2578 1456 211 82 72 chr1 264574329 264574902 -17618762 - L1MEc LINE L1 -3897 3225 2647 954 186 87 11 chr1 264574970 264575153 -17618511 + MER58A DNA MER1_type 28 224 0 1021 269 74 9 chr1 264575154 264575478 -17618186 - L1MEc LINE L1 -4528 2594 2250 785 260 31 12 chr1 264575496 264575754 -17617910 - L1MEc LINE L1 -6138 285 23 26 0 0 0 chr1 264575860 264575886 -17617778 + AT_rich Low_complexity Low_complexity 1 26 0 1679 206 173 9 chr1 264576167 264576613 -17617051 - LTR40a LTR ERVL 0 519 1 223 355 26 0 chr1 264578223 264578299 -17615365 + MIR SINE MIR 34 111 -97 367 328 160 21 chr1 264578774 264579106 -17614558 + L2 LINE L2 2515 2892 -422 257 366 0 0 chr1 264579123 264579298 -17614366 + (CTAGT)n Simple_repeat Simple_repeat 5 179 0 195 321 71 18 chr1 264579475 264579643 -17614021 + L2 LINE L2 3005 3181 -132 418 254 15 46 chr1 264579808 264579938 -17613726 + L2 LINE L2 3188 3313 0 194 272 138 65 chr1 264579928 264580174 -17613490 - L2 LINE L2 -1276 2038 1775 * 220 243 200 0 chr1 264582114 264582184 -17611480 - MIR SINE MIR -150 112 29 1521 193 39 7 chr1 264582267 264582552 -17611112 + AluJo SINE Alu 1 294 -18 1364 273 107 31 chr1 264582578 264583602 -17610062 + L1MCc LINE L1 3200 4301 -2640 * 2313 258 43 20 chr1 264583597 264584248 -17609416 + L1ME1 LINE L1 6 671 -5752 3418 246 52 40 chr1 264584707 264585052 -17608612 + L1ME1 LINE L1 830 1169 -5772 420 20 0 0 chr1 264585052 264585101 -17608563 + (CA)n Simple_repeat Simple_repeat 2 50 0 3418 246 52 40 chr1 264585101 264587802 -17605862 + L1ME1 LINE L1 1169 4084 -2857 3074 213 87 18 chr1 264587786 264589287 -17604377 + L1ME1 LINE L1 5361 7128 -1 * 1596 263 109 51 chr1 264589292 264590860 -17602804 + L1MCc LINE L1 4289 5954 -987 322 348 7 7 chr1 264591515 264591670 -17601994 + CT-rich Low_complexity Low_complexity 2 156 0 201 369 0 0 chr1 264593316 264593400 -17600264 + MIR SINE MIR 48 131 -131 831 125 15 15 chr1 264593488 264593624 -17600040 + MLT1B LTR MaLR 1 136 -254 1881 184 6 12 chr1 264593624 264593956 -17599708 + MLT1A1 LTR MaLR 1 330 -35 291 28 0 0 chr1 264593956 264593992 -17599672 + (TTG)n Simple_repeat Simple_repeat 2 37 0 426 109 16 0 chr1 264594007 264594071 -17599593 + MLT1B LTR MaLR 133 197 -193 1541 144 44 11 chr1 264594173 264594444 -17599220 + L1PA15 LINE L1 5882 6161 -4 225 390 43 0 chr1 264594518 264594659 -17599005 + MIR SINE MIR 21 167 -95 489 261 177 88 chr1 264594780 264595248 -17598416 + LTR67 LTR ERVL 46 555 -2 706 338 81 13 chr1 264595614 264595996 -17597668 + L3 LINE CR1 300 707 -870 320 281 11 0 chr1 264596184 264596273 -17597391 + MIR SINE MIR 173 262 0 800 226 42 56 chr1 264596938 264597225 -17596439 + HAL1b LINE L1 690 972 -376 574 24 0 37 chr1 264597225 264597307 -17596357 + (TTTC)n Simple_repeat Simple_repeat 4 82 0 240 94 0 0 chr1 264597307 264597339 -17596325 + (TTTCC)n Simple_repeat Simple_repeat 1 32 0 2078 136 10 3 chr1 264597339 264597640 -17596024 - AluSx SINE Alu -9 303 1 1034 111 7 0 chr1 264598316 264598451 -17595213 + FRAM SINE Alu 16 151 -25 2071 95 37 0 chr1 264599606 264599907 -17593757 + AluSx SINE Alu 1 311 0 2322 136 68 17 chr1 264600264 264600677 -17592987 + L1PA16 LINE L1 5732 6165 -1 270 157 57 57 chr1 264601940 264602010 -17591654 - L1ME4a LINE L1 -202 5919 5850 2332 151 62 0 chr1 264602300 264602703 -17590961 + MSTA LTR MaLR 1 428 0 1842 186 22 3 chr1 264603327 264603674 -17589990 - MLT1A1 LTR MaLR -10 447 1 791 73 0 9 chr1 264603710 264603820 -17589844 + L1PB1 LINE L1 6039 6147 -4 355 62 0 31 chr1 264603948 264604013 -17589651 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 2370 133 13 33 chr1 264604486 264604884 -17588780 + MLT1B LTR MaLR 1 390 0 231 182 136 15 chr1 264605149 264605215 -17588449 + MIR SINE MIR 67 140 -122 3673 140 44 51 chr1 264606367 264607097 -17586567 - LTR8A LTR ERV1 0 727 3 861 118 30 0 chr1 264606965 264607100 -17586564 - LTR8A LTR ERV1 -588 139 1 298 123 53 0 chr1 264607413 264607470 -17586194 - MER69 DNA AcHobo -17 2509 2450 486 209 139 39 chr1 264607473 264607546 -17586118 - MER69 DNA AcHobo -2384 142 78 1852 231 56 88 chr1 264607546 264607572 -17586092 - MER72 LTR ERV1 0 722 697 2165 120 0 0 chr1 264607572 264607863 -17585801 + AluSx SINE Alu 1 291 -21 1852 231 56 88 chr1 264607863 264608582 -17585082 - MER72 LTR ERV1 -25 697 1 486 209 139 39 chr1 264608582 264608637 -17585027 - MER69 DNA AcHobo -2448 78 1 280 212 118 50 chr1 264609062 264609295 -17584369 + L1ME4a LINE L1 5673 5934 -187 248 0 31 0 chr1 264609303 264609335 -17584329 + (CA)n Simple_repeat Simple_repeat 1 33 0 38 85 0 0 chr1 264609998 264610092 -17583572 + AT_rich Low_complexity Low_complexity 1 94 0 911 153 20 61 chr1 264610179 264610233 -17583431 - L1MB7 LINE L1 0 6184 6129 1611 204 18 0 chr1 264610233 264610518 -17583146 - AluJb SINE Alu -22 290 1 911 153 20 61 chr1 264610518 264610659 -17583005 - L1MB7 LINE L1 -55 6129 5997 1810 193 141 62 chr1 264610689 264611344 -17582320 - LTR48 LTR ERV1 0 644 3 1557 114 15 52 chr1 264611344 264611615 -17582049 - L1MB7 LINE L1 -197 5981 5721 1447 138 28 0 chr1 264611615 264611833 -17581831 + MER101B LTR ERV1 1 224 -346 1484 176 18 29 chr1 264611837 264612116 -17581548 - LTR8 LTR ERV1 0 691 416 1635 234 139 80 chr1 264612116 264612322 -17581342 + HAL1 LINE L1 1220 1413 -1094 703 209 8 22 chr1 264612322 264612456 -17581208 - FLAM_A SINE Alu 0 133 2 1635 234 139 80 chr1 264612456 264613430 -17580234 + HAL1 LINE L1 1413 2469 -38 1834 159 20 3 chr1 264613438 264613800 -17579864 + AluJo SINE Alu 6 372 0 291 175 0 0 chr1 264613791 264613848 -17579816 + G-rich Low_complexity Low_complexity 3 59 0 656 143 29 29 chr1 264613878 264614053 -17579611 + GA-rich Low_complexity Low_complexity 2 176 0 428 188 198 0 chr1 264614354 264614504 -17579160 + FLAM_A SINE Alu 1 169 0 624 186 0 0 chr1 264614701 264614814 -17578850 + L1MA6 LINE L1 6188 6300 0 31 0 0 0 chr1 264614815 264614846 -17578818 + AT_rich Low_complexity Low_complexity 1 31 0 944 87 0 0 chr1 264615373 264615488 -17578176 - AluSq/x SINE Alu -198 115 1 1256 158 31 46 chr1 264616970 264617230 -17576434 - LTR24C LTR ERV1 0 635 380 1610 126 20 0 chr1 264617251 264617497 -17576167 - LTR24C LTR ERV1 -384 251 1 241 311 38 23 chr1 264617497 264617629 -17576035 + MIR SINE MIR 51 184 -78 258 253 165 0 chr1 264618506 264618585 -17575079 - MER21B LTR ERV1 -51 812 721 * 586 98 0 12 chr1 264618580 264618656 -17575008 - MER49 LTR ERV1 -235 688 614 1402 95 133 21 chr1 264618656 264618897 -17574767 + MER4B LTR ERV1 1 268 -342 * 1466 160 13 0 chr1 264618896 264619133 -17574531 + MER49 LTR ERV1 684 923 0 1333 205 150 51 chr1 264619173 264619384 -17574280 + LTR48 LTR ERV1 3 192 -452 752 78 0 26 chr1 264619384 264619499 -17574165 - L1PA13 LINE L1 0 6163 6052 1333 205 150 51 chr1 264619499 264619930 -17573734 + LTR48 LTR ERV1 192 644 0 890 194 32 74 chr1 264620111 264620327 -17573337 - MER21B LTR ERV1 -638 225 19 1029 207 90 84 chr1 264620377 264620791 -17572873 + MER41B LTR ERV1 200 476 -10 2774 138 14 9 chr1 264621059 264621502 -17572162 + MER65A LTR ERV1 1 445 0 224 222 0 0 chr1 264621678 264621723 -17571941 + L2 LINE L2 3269 3313 0 499 233 30 102 chr1 264622256 264622522 -17571142 - MIR SINE MIR -8 254 8 321 274 91 48 chr1 264622546 264622673 -17570991 + L3 LINE CR1 1079 1218 -359 840 189 18 53 chr1 264622673 264622900 -17570764 - MER20 DNA MER1_type 0 219 1 321 274 91 48 chr1 264622900 264622958 -17570706 + L3 LINE CR1 1218 1272 -305 227 233 0 0 chr1 264623355 264623398 -17570266 + L2 LINE L2 3221 3263 -9 341 299 84 13 chr1 264623942 264624096 -17569568 - L1ME4a LINE L1 -1 6120 5956 1664 240 105 85 chr1 264624659 264625402 -17568262 + MER21B LTR ERV1 1 758 -105 806 172 19 19 chr1 264625495 264625652 -17568012 + MER101 LTR ERV1 11 167 -307 603 261 0 0 chr1 264625758 264625873 -17567791 - FLAM_A SINE Alu -18 115 1 842 220 26 48 chr1 264625894 264626121 -17567543 + MER101 LTR ERV1 253 474 0 288 144 63 45 chr1 264626748 264626859 -17566805 + (TTAAA)n Simple_repeat Simple_repeat 3 115 0 656 294 53 76 chr1 264628665 264629114 -17564550 + MER101-int LTR ERV1 147 585 -4062 275 202 71 61 chr1 264629502 264629601 -17564063 + MER110-int LTR ERV1 3847 3946 -4480 320 283 41 50 chr1 264630027 264630237 -17563427 + MER110-int LTR ERV1 3801 4127 -2402 1992 73 8 0 chr1 264630449 264630710 -17562954 - L1PA8 LINE L1 0 6172 5910 1033 93 33 0 chr1 264631119 264631269 -17562395 - AluSg/x SINE Alu 0 312 158 286 342 59 40 chr1 264631517 264631821 -17561843 + MER110-int LTR ERV1 2250 2559 -2088 270 81 0 0 chr1 264632047 264632084 -17561580 + (T)n Simple_repeat Simple_repeat 1 37 0 2021 137 14 0 chr1 264632123 264632416 -17561248 - AluSx SINE Alu -15 297 1 303 312 88 0 chr1 264633711 264633836 -17559828 + MER70-int LTR ERVL 4533 4668 -355 1464 220 57 53 chr1 264634375 264634829 -17558835 + MER101 LTR ERV1 19 474 0 375 280 0 30 chr1 264635005 264635105 -17558559 - MER81 DNA DNA -17 97 1 196 288 76 98 chr1 264635430 264635614 -17558050 + MER5A DNA MER1_type 8 187 -2 1840 145 26 19 chr1 264635763 264636073 -17557591 + AluJb SINE Alu 1 312 0 2097 106 11 3 chr1 264636126 264636438 -17557226 - AluSq SINE Alu 0 314 1 2226 144 26 60 chr1 264637843 264638260 -17555404 + MER57A LTR ERV1 1 403 0 249 170 208 0 chr1 264638482 264638535 -17555129 + Tigger6a DNA MER2_type 1 64 -1019 3247 179 158 32 chr1 264638578 264638839 -17554825 + Tigger6a DNA MER2_type 67 294 -1303 2389 111 0 6 chr1 264638839 264639154 -17554510 + AluSq SINE Alu 1 313 0 3247 179 158 32 chr1 264639154 264639784 -17553880 + Tigger6a DNA MER2_type 294 1070 -13 22 0 0 0 chr1 264639876 264639898 -17553766 + AT_rich Low_complexity Low_complexity 1 22 0 183 222 0 0 chr1 264639915 264639960 -17553704 + (TG)n Simple_repeat Simple_repeat 2 46 0 495 171 23 120 chr1 264640520 264640736 -17552928 + L1ME4a LINE L1 5924 6118 -3 4391 112 31 13 chr1 264641646 264641981 -17551683 + L1PB4 LINE L1 5445 5773 -383 360 43 0 0 chr1 264641981 264642027 -17551637 + (TG)n Simple_repeat Simple_repeat 2 47 0 4391 112 31 13 chr1 264642027 264642378 -17551286 + L1PB4 LINE L1 5773 6143 -13 2035 108 0 88 chr1 264642479 264642821 -17550843 + AluSx SINE Alu 1 312 0 192 347 20 0 chr1 264642865 264642963 -17550701 + L2 LINE L2 1773 1872 -1442 211 239 26 60 chr1 264643061 264643178 -17550486 + L2 LINE L2 2366 2478 -836 623 256 90 104 chr1 264643316 264643730 -17549934 - L1MEc LINE L1 -3319 2896 2491 2095 118 3 3 chr1 264643730 264644017 -17549647 - AluSx SINE Alu -25 287 1 623 256 90 104 chr1 264644017 264644177 -17549487 - L1MEc LINE L1 -3724 2491 2330 438 317 78 53 chr1 264644190 264644303 -17549361 + MIR SINE MIR 4 113 -149 1610 176 0 4 chr1 264644303 264644575 -17549089 - AluJb SINE Alu -7 305 35 438 317 78 53 chr1 264644575 264644704 -17548960 + MIR SINE MIR 113 252 -10 41 78 0 0 chr1 264644818 264644908 -17548756 + AT_rich Low_complexity Low_complexity 1 90 0 228 292 0 0 chr1 264645384 264645456 -17548208 - L1MEc LINE L1 -4704 1692 1621 338 295 145 10 chr1 264645512 264645719 -17547945 + MLT1J2 LTR MaLR 77 311 -139 316 311 82 0 chr1 264645858 264645980 -17547684 - HAL1 LINE L1 -937 1570 1439 1724 233 50 26 chr1 264646015 264646436 -17547228 + MER70B LTR ERVL 2 432 -146 1014 287 83 55 chr1 264646652 264647432 -17546232 - L1MEc LINE L1 -4862 1343 536 201 39 0 0 chr1 264647432 264647458 -17546206 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 1014 287 83 55 chr1 264647458 264647520 -17546144 - L1MEc LINE L1 -5669 536 477 244 290 14 0 chr1 264647742 264647811 -17545853 - L1MEc LINE L1 -6003 202 133 553 257 113 45 chr1 264647843 264648154 -17545510 - L2 LINE L2 -35 3278 2947 262 25 0 0 chr1 264648209 264648249 -17545415 + L1PA2 LINE L1 6115 6154 -1 2095 143 0 0 chr1 264648667 264648974 -17544690 - AluSx SINE Alu -5 307 1 504 268 65 12 chr1 264649822 264649990 -17543674 + MIR3 SINE MIR 17 193 -15 1388 186 51 11 chr1 264651292 264651567 -17542097 - AluJo SINE Alu -5 307 22 792 144 0 8 chr1 264651602 264651727 -17541937 - FLAM_C SINE Alu -8 125 2 241 333 55 12 chr1 264652782 264652947 -17540717 + L2 LINE L2 2581 2752 -562 709 216 125 56 chr1 264653368 264653673 -17539991 + L1ME1 LINE L1 5795 6120 -46 547 211 16 31 chr1 264653701 264653829 -17539835 - FLAM_C SINE Alu -7 126 1 256 315 43 0 chr1 264654480 264654572 -17539092 - MIR SINE MIR -91 171 76 185 301 179 16 chr1 264655671 264655794 -17537870 - MER5B DNA MER1_type -35 143 1 291 278 41 0 chr1 264655878 264655975 -17537689 + L1MA9 LINE L1 6119 6219 -93 213 121 0 0 chr1 264656287 264656320 -17537344 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 408 183 0 0 chr1 264656347 264656440 -17537224 + (TCCA)n Simple_repeat Simple_repeat 2 94 0 185 132 26 0 chr1 264656439 264656477 -17537187 + CT-rich Low_complexity Low_complexity 3 41 0 * 237 307 100 27 chr1 264656566 264656716 -17536948 + MIR3 SINE MIR 11 171 -37 963 233 36 70 chr1 264656998 264657410 -17536254 + LTR37B LTR ERV1 1 398 -70 468 288 62 35 chr1 264657575 264657863 -17535801 + MER34B LTR ERV1 270 565 0 2344 132 0 0 chr1 264658283 264658593 -17535071 + AluSx SINE Alu 1 310 -2 1381 167 4 45 chr1 264658601 264658847 -17534817 - MER46A DNA MER2_type 0 236 1 1674 216 82 47 chr1 264658871 264659384 -17534280 + MER21B LTR ERV1 293 823 -40 471 256 78 11 chr1 264659809 264660000 -17533664 + L1ME LINE L1 5619 5822 -299 1644 174 36 14 chr1 264660057 264660338 -17533326 + AluJo SINE Alu 5 291 -21 364 69 375 0 chr1 264660347 264660419 -17533245 + L1PA7 LINE L1 6056 6154 0 455 315 128 5 chr1 264661362 264661565 -17532099 - MIR SINE MIR -1 261 34 456 19 0 0 chr1 264662044 264662097 -17531567 + (TG)n Simple_repeat Simple_repeat 2 54 0 484 261 119 0 chr1 264662376 264662510 -17531154 - MIR SINE MIR -111 151 2 387 285 66 15 chr1 264663626 264663763 -17529901 - MIR SINE MIR -2 260 117 3461 154 24 34 chr1 264664007 264664330 -17529334 - L1MB3 LINE L1 -34 6149 5824 2337 115 0 3 chr1 264664330 264664643 -17529021 - AluSx SINE Alu 0 312 1 3461 154 24 34 chr1 264664643 264665028 -17528636 - L1MB3 LINE L1 -359 5824 5448 280 191 0 0 chr1 264665173 264665220 -17528444 - MIR SINE MIR -64 144 98 207 328 95 0 chr1 264665322 264665438 -17528226 - MIR SINE MIR -33 229 103 6042 125 188 90 chr1 264666855 264668400 -17525264 + pTR5 LTR ERV1 742 2438 0 1636 160 60 3 chr1 264668484 264668766 -17524898 + AluJo SINE Alu 1 298 -14 357 323 154 28 chr1 264669230 264669549 -17524115 - L2 LINE L2 -37 3235 2877 899 230 5 5 chr1 264669672 264669876 -17523788 + MIR SINE MIR 32 235 -27 2688 139 14 16 chr1 264669997 264670430 -17523234 + Tigger2a DNA MER2_type 1 432 -2 228 310 164 9 chr1 264670773 264670889 -17522775 - MER91B DNA MER1_type -14 176 43 239 324 29 29 chr1 264671519 264671624 -17522040 + MER5A DNA MER1_type 6 110 -79 192 317 0 50 chr1 264672180 264672240 -17521424 - L2 LINE L2 -117 3155 3099 502 190 0 0 chr1 264722384 264722463 -17471201 - AluJ/FLAM SINE Alu -232 80 2 281 258 150 33 chr1 264723479 264723599 -17470065 + LTR67 LTR ERVL 6 139 -418 565 214 27 9 chr1 264723649 264723761 -17469903 + MER81 DNA DNA 1 114 0 2424 196 52 19 chr1 264724251 264724791 -17468873 - MER74A LTR ERVL 0 558 1 193 143 20 20 chr1 264725398 264725447 -17468217 + CT-rich Low_complexity Low_complexity 2 50 0 2130 161 63 0 chr1 264725514 264725912 -17467752 + MSTB1 LTR MaLR 10 432 0 566 244 32 19 chr1 264726636 264726792 -17466872 - MER103 DNA DNA -1 165 8 2551 48 3 0 chr1 264726927 264727217 -17466447 - AluY SINE Alu -20 291 1 455 338 80 7 chr1 264727823 264727974 -17465690 + MER91A DNA MER1_type 8 169 -27 2104 121 7 10 chr1 264728322 264728629 -17465035 - AluSp SINE Alu -3 310 5 1212 58 0 0 chr1 264728632 264728769 -17464895 - AluSq/x SINE Alu -175 137 1 195 301 129 0 chr1 264729322 264729415 -17464249 + L2 LINE L2 1684 1788 -1526 2153 274 45 42 chr1 264729421 264730453 -17463211 + L1MEc LINE L1 464 1499 -5326 2438 213 34 132 chr1 264730456 264731360 -17462304 + L1MEc LINE L1 2868 3617 -3027 1918 110 40 4 chr1 264731360 264731656 -17462008 + AluSx SINE Alu 1 306 0 2438 213 34 132 chr1 264731656 264732010 -17461654 + L1MEc LINE L1 3617 4004 -2640 2678 177 40 43 chr1 264732017 264732432 -17461232 + L1MC3 LINE L1 7199 7613 -172 2047 130 0 14 chr1 264732432 264732725 -17460939 + AluSx SINE Alu 1 289 -23 2678 177 40 43 chr1 264732725 264732890 -17460774 + L1MC3 LINE L1 7613 7777 -8 369 0 0 0 chr1 264732894 264732935 -17460729 + (CA)n Simple_repeat Simple_repeat 2 42 0 552 15 0 0 chr1 264732936 264733001 -17460663 + (GA)n Simple_repeat Simple_repeat 2 66 0 2697 217 59 94 chr1 264733001 264733379 -17460285 + L1MEc LINE L1 4015 4405 -2239 1852 181 3 0 chr1 264733379 264733678 -17459986 + AluJo SINE Alu 9 308 -4 2697 217 59 94 chr1 264733678 264734430 -17459234 + L1MEc LINE L1 4405 5106 -1538 1174 94 6 6 chr1 264734490 264734670 -17458994 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 368 40 20 0 chr1 264734670 264734720 -17458944 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 255 143 0 0 chr1 264734767 264734802 -17458862 - Alu SINE Alu -266 35 1 737 206 72 0 chr1 264734802 264734982 -17458682 + L1MEc LINE L1 5120 5312 -1332 * 1042 177 93 0 chr1 264734980 264735037 -17458627 + L1MEc LINE L1 5 55 -6487 2505 121 8 3 chr1 264735037 264735400 -17458264 - MER47A DNA MER2_type -1 365 1 1042 177 93 0 chr1 264735400 264735460 -17458204 + L1MEc LINE L1 55 108 -6434 4983 143 6 18 chr1 264735460 264736252 -17457412 - LTR39 LTR ERV1 0 783 1 1042 177 93 0 chr1 264736252 264736359 -17457305 + L1MEc LINE L1 108 251 -6291 207 0 0 0 chr1 264736359 264736382 -17457282 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2845 207 20 31 chr1 264736403 264736534 -17457130 + L1MEc LINE L1 1477 1608 -5038 1795 107 64 54 chr1 264736534 264736845 -17456819 + AluSx SINE Alu 1 314 0 2845 207 20 31 chr1 264736845 264737428 -17456236 + L1MEc LINE L1 1608 2184 -4462 1396 218 91 29 chr1 264737432 264737882 -17455782 + L1MEc LINE L1 5303 5780 -864 395 151 0 14 chr1 264737887 264737960 -17455704 - L1MB3 LINE L1 -10 6173 6102 23 0 0 0 chr1 264738214 264738237 -17455427 + AT_rich Low_complexity Low_complexity 1 23 0 816 120 0 0 chr1 264738343 264738460 -17455204 - AluSg/x SINE Alu -10 300 184 34 0 0 0 chr1 264738793 264738827 -17454837 + AT_rich Low_complexity Low_complexity 1 34 0 619 245 130 37 chr1 264738830 264739158 -17454506 - L1ME4a LINE L1 -13 6108 5729 2387 99 0 0 chr1 264739158 264739462 -17454202 + AluSg SINE Alu 1 304 -6 619 245 130 37 chr1 264739462 264739565 -17454099 - L1ME4a LINE L1 -392 5729 5637 385 246 98 0 chr1 264739913 264740035 -17453629 - MIR SINE MIR -59 203 70 753 229 41 18 chr1 264740113 264740331 -17453333 + MIR SINE MIR 8 230 -32 949 206 11 0 chr1 264740381 264740556 -17453108 - MER77 LTR ERV1 -70 535 359 280 308 31 57 chr1 264740964 264741123 -17452541 + MIR SINE MIR 34 188 -74 615 182 0 0 chr1 264741134 264741233 -17452431 + AluJ/FLAM SINE Alu 2 100 -212 1058 133 11 28 chr1 264741320 264741500 -17452164 + AluJo SINE Alu 119 295 -17 2362 155 68 15 chr1 264742206 264742677 -17450987 + LTR54B LTR ERV1 1 496 -2 2302 130 12 3 chr1 264743380 264743719 -17449945 + MER61A LTR ERV1 2 343 0 409 177 0 0 chr1 264743975 264744037 -17449627 + AluJ/FLAM SINE Alu 1 62 -240 1688 99 5 0 chr1 264744039 264744262 -17449402 - AluSp SINE Alu -8 305 82 1884 218 35 106 chr1 264744262 264745014 -17448650 - L1MEc LINE L1 -2099 4116 3419 2011 185 76 7 chr1 264745019 264745451 -17448213 + MLT1C LTR MaLR 6 467 0 4007 225 52 27 chr1 264745452 264746794 -17446870 - L1MEc LINE L1 -2793 3422 2089 234 62 0 0 chr1 264746795 264746827 -17446837 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 10594 44 74 7 chr1 264746827 264748122 -17445542 + SVA Other Other 1 1382 -4 243 0 0 0 chr1 264748212 264748239 -17445425 + (A)n Simple_repeat Simple_repeat 1 27 0 31 0 0 0 chr1 264748467 264748498 -17445166 + AT_rich Low_complexity Low_complexity 1 31 0 938 232 8 12 chr1 264748498 264748739 -17444925 + AluY SINE Alu 1 240 -71 1465 135 83 16 chr1 264748839 264749091 -17444573 + MSTA LTR MaLR 160 428 0 1740 283 125 31 chr1 264749177 264750609 -17443055 - L2 LINE L2 -76 3237 1672 212 0 36 0 chr1 264751086 264751114 -17442550 + (CA)n Simple_repeat Simple_repeat 2 30 0 2301 92 0 16 chr1 264752718 264753023 -17440641 + AluSx SINE Alu 1 300 -12 628 266 19 34 chr1 264753926 264754133 -17439531 - MIR SINE MIR -6 256 53 446 298 67 11 chr1 264754742 264754920 -17438744 - MIR SINE MIR -28 234 47 411 289 10 70 chr1 264754930 264755131 -17438533 - MLT1J LTR MaLR 0 511 323 237 271 82 57 chr1 264755251 264755373 -17438291 - MLT1J LTR MaLR -344 167 43 227 267 204 23 chr1 264755688 264755864 -17437800 - L1ME4a LINE L1 -35 6086 5879 183 42 0 0 chr1 264757320 264757344 -17436320 + (TG)n Simple_repeat Simple_repeat 1 24 0 1903 145 3 11 chr1 264757344 264757627 -17436037 - AluSx SINE Alu -31 281 1 407 182 36 64 chr1 264758042 264758152 -17435512 - MIR SINE MIR -39 223 117 553 321 31 16 chr1 264758154 264758630 -17435034 + LTR33 LTR ERVL 1 518 -3 409 233 12 0 chr1 264758655 264758741 -17434923 - MIR SINE MIR -164 98 12 240 355 99 0 chr1 264758757 264758878 -17434786 + MIR SINE MIR 20 152 -56 206 259 0 19 chr1 264759697 264759751 -17433913 + L3 LINE CR1 884 936 -641 242 356 110 8 chr1 264759770 264759888 -17433776 - MIR SINE MIR -128 134 5 309 271 52 62 chr1 264759897 264759993 -17433671 + MER5A DNA MER1_type 35 139 -49 388 291 20 14 chr1 264760008 264760156 -17433508 + L1MC5 LINE L1 7743 7891 -70 282 273 119 49 chr1 264760619 264760762 -17432902 + MIR SINE MIR 3 154 -64 2224 122 55 14 chr1 264760764 264761108 -17432556 + MER46B DNA MER2_type 4 236 0 391 217 65 22 chr1 264761330 264761422 -17432242 + LTR16C LTR ERVL 83 178 -313 749 242 41 14 chr1 264761476 264761695 -17431969 + LTR16C LTR ERVL 267 491 0 381 206 14 0 chr1 264762104 264762177 -17431487 + LTR16C LTR ERVL 418 491 0 819 224 215 33 chr1 264762393 264762723 -17430941 + LTR50 LTR ERVL 44 433 -362 568 216 165 16 chr1 264762725 264762802 -17430862 + LTR50 LTR ERVL 573 637 -158 542 259 9 0 chr1 264762802 264762914 -17430750 + MER81 DNA DNA 2 114 0 568 216 165 16 chr1 264762914 264763030 -17430634 + LTR50 LTR ERVL 637 795 0 492 352 65 9 chr1 264763420 264763650 -17430014 + HERV16 LTR ERVL 410 652 -4344 986 210 98 5 chr1 264763774 264763979 -17429685 - MER58A DNA MER1_type 0 224 1 451 307 121 22 chr1 264764119 264764350 -17429314 + HERV16 LTR ERVL 958 1211 -3785 833 305 45 7 chr1 264764496 264764923 -17428741 + HERV16 LTR ERVL 1453 1892 -3104 1370 333 90 31 chr1 264765015 264765462 -17428202 + HERV16 LTR ERVL 2039 2458 -3196 381 22 0 0 chr1 264765462 264765508 -17428156 + (TC)n Simple_repeat Simple_repeat 1 46 0 2078 115 0 11 chr1 264765509 264765796 -17427868 - AluSx SINE Alu -28 284 1 1370 333 90 31 chr1 264765796 264766290 -17427374 + HERV16 LTR ERVL 2457 3076 -2578 1511 211 82 72 chr1 264766342 264766915 -17426749 - L1MEc LINE L1 -3897 3225 2647 955 186 87 11 chr1 264766983 264767166 -17426498 + MER58A DNA MER1_type 28 224 0 1041 269 74 9 chr1 264767167 264767491 -17426173 - L1MEc LINE L1 -4528 2594 2250 788 260 31 12 chr1 264767509 264767767 -17425897 - L1MEc LINE L1 -6138 285 23 26 0 0 0 chr1 264767873 264767899 -17425765 + AT_rich Low_complexity Low_complexity 1 26 0 1823 206 173 9 chr1 264768180 264768626 -17425038 - LTR40a LTR ERVL 0 519 1 245 304 77 98 chr1 264770236 264770419 -17423245 + MIR SINE MIR 34 211 -51 453 312 148 46 chr1 264770787 264771159 -17422505 + L2 LINE L2 2515 2924 -390 239 354 0 0 chr1 264771177 264771304 -17422360 + (CTAGG)n Simple_repeat Simple_repeat 4 130 0 447 232 53 174 chr1 264771452 264771848 -17421816 + L2 LINE L2 2966 3313 0 263 272 138 65 chr1 264771838 264772084 -17421580 - L2 LINE L2 -1276 2038 1775 * 493 233 238 11 chr1 264773930 264774119 -17419545 - MIR SINE MIR -2 260 29 1513 193 39 7 chr1 264774202 264774487 -17419177 + AluJo SINE Alu 1 294 -18 1487 273 107 31 chr1 264774513 264775537 -17418127 + L1ME4a LINE L1 3200 4301 -2640 * 2309 258 43 20 chr1 264775532 264776183 -17417481 + L1ME1 LINE L1 6 671 -5752 3523 246 52 40 chr1 264776642 264776987 -17416677 + L1ME1 LINE L1 830 1169 -5772 420 20 0 0 chr1 264776987 264777036 -17416628 + (CA)n Simple_repeat Simple_repeat 2 50 0 3523 246 52 40 chr1 264777036 264779737 -17413927 + L1ME1 LINE L1 1169 4084 -2857 3135 213 87 18 chr1 264779721 264781222 -17412442 + L1ME1 LINE L1 5361 7128 -1 * 1701 272 110 49 chr1 264781243 264782795 -17410869 + L1ME4a LINE L1 4304 5954 -987 322 348 7 7 chr1 264783450 264783605 -17410059 + CT-rich Low_complexity Low_complexity 2 156 0 181 370 0 0 chr1 264784976 264785057 -17408607 - MIR SINE MIR -122 140 60 224 369 0 0 chr1 264785251 264785335 -17408329 + MIR SINE MIR 48 131 -131 832 125 15 15 chr1 264785423 264785559 -17408105 + MLT1B LTR MaLR 1 136 -254 1885 184 6 12 chr1 264785559 264785891 -17407773 + MLT1A1 LTR MaLR 1 330 -35 291 28 0 0 chr1 264785891 264785927 -17407737 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1380 189 16 0 chr1 264785942 264786196 -17407468 + MLT1B LTR MaLR 133 390 0 292 287 176 0 chr1 264786352 264786460 -17407204 + L2 LINE L2 3168 3294 -19 2009 127 41 0 chr1 264786998 264787289 -17406375 - AluSc SINE Alu -6 303 1 192 328 70 31 chr1 264787577 264787705 -17405959 + L2 LINE L2 3138 3270 -2 425 271 105 20 chr1 264788621 264788868 -17404796 + L1ME4a LINE L1 6334 6601 -315 313 277 52 13 chr1 264788995 264789150 -17404514 + L1ME4a LINE L1 6756 6916 0 2215 251 38 36 chr1 264789330 264790072 -17403592 - L1ME3A LINE L1 -35 6135 5393 379 196 9 19 chr1 264790072 264790179 -17403485 + L1M4 LINE L1 3228 3333 -2813 715 323 45 22 chr1 264790982 264791537 -17402127 - L1MEc LINE L1 -4576 1820 1253 235 246 0 16 chr1 264791574 264791635 -17402029 - MER94 DNA DNA -4 130 71 22 70 0 0 chr1 264791654 264791697 -17401967 + AT_rich Low_complexity Low_complexity 1 43 0 2335 93 0 7 chr1 264792501 264792802 -17400862 + AluSx SINE Alu 1 299 -13 4024 129 3 5 chr1 264793203 264793786 -17399878 + SVA Other Other 801 1382 -4 23 0 0 0 chr1 264793840 264793863 -17399801 + AT_rich Low_complexity Low_complexity 1 23 0 294 50 0 0 chr1 264793876 264793916 -17399748 + (A)n Simple_repeat Simple_repeat 1 40 0 2019 259 56 21 chr1 264793916 264794161 -17399503 - L1MEc LINE L1 -856 1720 1839 2232 121 0 0 chr1 264794161 264794466 -17399198 + AluY SINE Alu 1 305 -6 2019 259 56 21 chr1 264794466 264794911 -17398753 - L1MEc LINE L1 -736 1840 1412 3090 249 96 6 chr1 264794974 264795856 -17397808 - L1MEc LINE L1 -5413 983 22 366 306 41 48 chr1 264795856 264796003 -17397661 - MIR SINE MIR -115 147 2 642 262 48 104 chr1 264796081 264796474 -17397190 - L2 LINE L2 0 3313 2943 340 254 126 60 chr1 264796596 264796881 -17396783 - L1MC4a LINE L1 -4 6117 5806 1444 191 110 3 chr1 264796881 264797190 -17396474 + MER2 DNA MER2_type 1 342 -2 340 254 126 60 chr1 264797190 264797322 -17396342 - L1MC4a LINE L1 -315 5806 5684 227 167 0 0 chr1 264797332 264797368 -17396296 + LTR33 LTR ERVL 1 36 -485 2498 144 19 16 chr1 264797790 264798221 -17395443 + L1MA4A LINE L1 5864 6295 -8 1383 251 109 25 chr1 264798763 264799285 -17394379 + LTR48B LTR ERV1 4 569 -75 2195 123 10 0 chr1 264799318 264799618 -17394046 + AluSg SINE Alu 1 303 -7 283 271 7 42 chr1 264799941 264800032 -17393632 + CT-rich Low_complexity Low_complexity 2 88 -52 216 0 0 0 chr1 264800032 264800056 -17393608 + (TG)n Simple_repeat Simple_repeat 1 24 0 283 271 7 42 chr1 264800056 264800108 -17393556 + CT-rich Low_complexity Low_complexity 88 140 0 204 207 0 69 chr1 264800337 264800395 -17393269 + L2 LINE L2 3204 3257 -15 2541 81 0 0 chr1 264801699 264802009 -17391655 + AluSg SINE Alu 1 310 0 632 215 63 43 chr1 264802747 264802990 -17390674 + MIR SINE MIR 3 237 -25 524 208 123 0 chr1 264804784 264804890 -17388774 + FLAM_A SINE Alu 7 125 -17 2088 106 0 20 chr1 264805098 264805434 -17388230 + AluSc SINE Alu 1 309 0 1956 231 84 13 chr1 264805717 264806322 -17387342 + MER114 LTR ERV 1 648 0 207 0 0 0 chr1 264806789 264806812 -17386852 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2276 57 0 3 chr1 264806814 264807096 -17386568 - AluY SINE Alu -30 281 1 2331 223 80 98 chr1 265007115 265007450 -17186214 - L1MC4a LINE L1 -925 6883 6543 306 50 0 0 chr1 265007450 265007490 -17186174 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 223 80 98 chr1 265007490 265008099 -17185565 - L1MC4a LINE L1 -1265 6543 5959 354 121 17 0 chr1 265008099 265008157 -17185507 - U7 snRNA snRNA -4 59 1 2331 223 80 98 chr1 265008157 265008301 -17185363 - L1MC4a LINE L1 -1849 5959 5814 750 242 48 12 chr1 265008313 265008617 -17185047 - L1MC4a LINE L1 -747 5399 5195 * 3389 165 82 19 chr1 265008610 265009251 -17184413 - L1MB3 LINE L1 0 6183 5583 198 0 0 0 chr1 265009251 265009273 -17184391 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3389 165 82 19 chr1 265009273 265009288 -17184376 - L1MB3 LINE L1 -600 5583 5570 2144 125 7 0 chr1 265009288 265009583 -17184081 + AluSg SINE Alu 1 297 -13 3389 165 82 19 chr1 265009583 265009647 -17184017 - L1MB3 LINE L1 -613 5570 5417 322 351 15 8 chr1 265010001 265010135 -17183529 - L1M4 LINE L1 -3743 2403 2269 27 0 0 0 chr1 265010346 265010373 -17183291 + AT_rich Low_complexity Low_complexity 1 27 0 499 292 109 52 chr1 265010635 265010782 -17182882 - HAL1b LINE L1 -706 642 505 1884 150 31 0 chr1 265010782 265011069 -17182595 - AluSx SINE Alu -16 296 1 499 292 109 52 chr1 265011069 265011473 -17182191 - HAL1b LINE L1 -843 505 60 200 284 80 45 chr1 265013502 265013590 -17180074 + L2 LINE L2 3221 3311 -2 448 253 28 96 chr1 265013739 265014063 -17179601 - L1MC4 LINE L1 0 8042 7741 352 255 0 61 chr1 265014454 265014552 -17179112 - MER5A DNA MER1_type -51 138 47 374 273 98 39 chr1 265014788 265014986 -17178678 + MIR SINE MIR 19 225 -37 442 270 220 6 chr1 265015772 265015931 -17177733 + MIR SINE MIR 60 252 -10 1201 223 61 74 chr1 265016943 265017486 -17176178 - L1MC4 LINE L1 -11 8031 7496 268 316 35 0 chr1 265017618 265017732 -17175932 - L1MC4 LINE L1 -562 7480 7363 25 31 0 0 chr1 265017967 265017999 -17175665 + GC_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 265018017 265018039 -17175625 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr1 265018141 265018169 -17175495 + GC_rich Low_complexity Low_complexity 1 28 0 274 220 17 59 chr1 265018202 265018320 -17175344 + C-rich Low_complexity Low_complexity 3 115 0 312 48 0 0 chr1 265020027 265020069 -17173595 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 366 265 29 0 chr1 265021719 265021821 -17171843 + MIR SINE MIR 85 189 -73 1101 131 13 102 chr1 265024831 265024869 -17168795 - MER20 DNA MER1_type -4 215 175 1566 200 57 0 chr1 265024869 265025149 -17168515 - AluJo SINE Alu -16 296 1 1101 131 13 102 chr1 265025149 265025346 -17168318 - MER20 DNA MER1_type -44 175 1 477 219 32 6 chr1 265025543 265025650 -17168014 - MIR SINE MIR -46 162 57 2447 88 16 0 chr1 265025886 265026191 -17167473 - AluSx SINE Alu -2 310 1 597 284 62 59 chr1 265026328 265026649 -17167015 - L2 LINE L2 0 3313 2992 2200 232 42 22 chr1 265028161 265028759 -17164905 - HsTC2 DNA Tc2 -5 1893 1284 1039 161 6 33 chr1 265029563 265029743 -17163921 - FRAM SINE Alu -1 175 1 765 235 152 26 chr1 265031436 265031666 -17161998 + MIR SINE MIR 4 262 0 231 318 45 0 chr1 265032578 265032666 -17160998 + MIR SINE MIR 3 94 -168 244 276 224 15 chr1 265035072 265035268 -17158396 - L2 LINE L2 -219 3053 2817 2498 140 32 18 chr1 265035946 265036389 -17157275 + LTR32 LTR ERVL 18 466 -5 485 327 76 28 chr1 265037615 265037826 -17155838 + MIR SINE MIR 28 248 -14 378 251 78 84 chr1 265038266 265038445 -17155219 - MER5B DNA MER1_type 0 178 1 1521 167 90 3 chr1 265038880 265039203 -17154461 - L1MB2 LINE L1 -9 6162 5812 1585 171 55 38 chr1 265039207 265039307 -17154357 - L1MB5 LINE L1 0 6174 6077 2294 107 0 0 chr1 265039307 265039607 -17154057 - AluY SINE Alu -11 300 1 1585 171 55 38 chr1 265039607 265039850 -17153814 - L1MB5 LINE L1 -97 6077 5825 3523 169 52 19 chr1 265039863 265039910 -17153754 - L1MB2 LINE L1 -3 6168 6124 1983 107 32 45 chr1 265039910 265040219 -17153445 - AluSx SINE Alu -3 309 5 3523 169 52 19 chr1 265040219 265040903 -17152761 - L1MB2 LINE L1 -47 6124 5413 2048 125 22 29 chr1 265041831 265042144 -17151520 - AluY SINE Alu 0 311 1 306 254 167 0 chr1 265042339 265042465 -17151199 + LTR50 LTR ERVL 9 155 -640 635 254 167 0 chr1 265042595 265042847 -17150817 + LTR50 LTR ERVL 502 795 0 180 0 0 0 chr1 265042947 265042967 -17150697 + (T)n Simple_repeat Simple_repeat 1 20 0 1957 74 0 0 chr1 265043185 265043414 -17150250 - AluSx SINE Alu -83 229 1 261 309 82 18 chr1 265043712 265043822 -17149842 - MIR SINE MIR -35 227 111 315 250 10 58 chr1 265044358 265044405 -17149259 + MIR SINE MIR 56 104 -158 1511 173 153 0 chr1 265044405 265044705 -17148959 + MER7A DNA MER2_type 1 344 -2 315 250 10 58 chr1 265044705 265044761 -17148903 + MIR SINE MIR 104 154 -108 1476 159 19 52 chr1 265044787 265045057 -17148607 - AluJo SINE Alu -27 285 25 2035 82 0 50 chr1 265045199 265045480 -17148184 + AluSq SINE Alu 32 298 -15 541 252 110 45 chr1 265046087 265046333 -17147331 - MIR SINE MIR 0 262 1 239 247 26 13 chr1 265047271 265047348 -17146316 + CT-rich Low_complexity Low_complexity 1 78 0 197 309 0 0 chr1 265047650 265047705 -17145959 - L3 LINE CR1 -34 1543 1489 2297 147 22 40 chr1 265048084 265048539 -17145125 - L1MB3 LINE L1 -34 6149 5703 2578 141 61 2 chr1 265049241 265049668 -17143996 - LTR47A LTR ERVL 0 452 1 258 277 36 27 chr1 265050182 265050294 -17143370 + MER103 DNA DNA 5 117 -49 299 307 102 8 chr1 265050799 265050926 -17142738 + L2 LINE L2 3172 3310 -3 2450 70 3 25 chr1 265051137 265051451 -17142213 - AluSx SINE Alu -4 308 2 297 344 64 19 chr1 265051453 265051610 -17142054 - MIR SINE MIR -74 188 25 213 196 0 0 chr1 265051612 265051658 -17142006 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 1660 149 88 0 chr1 265051718 265052026 -17141638 + MER7A DNA MER2_type 14 346 0 275 210 148 0 chr1 265053045 265053126 -17140538 + L2 LINE L2 3200 3292 -21 184 316 70 18 chr1 265056002 265056116 -17137548 + MER5B DNA MER1_type 59 178 0 600 226 11 51 chr1 265056201 265056378 -17137286 + MER104 DNA Tc2 5 174 -6 271 290 79 32 chr1 265056595 265056734 -17136930 - MIR SINE MIR -65 143 10 242 210 250 48 chr1 265057709 265057833 -17135831 - MIR SINE MIR -86 176 28 1955 130 13 33 chr1 265058114 265058414 -17135250 + AluJo SINE Alu 1 294 -18 306 0 0 0 chr1 265058437 265058471 -17135193 + (TG)n Simple_repeat Simple_repeat 1 34 0 414 192 0 0 chr1 265059117 265059189 -17134475 + Tigger5 DNA MER2_type 7 78 -2245 427 190 0 0 chr1 265059189 265059268 -17134396 - Tigger5 DNA MER2_type -3 2320 2242 346 228 13 13 chr1 265059259 265059338 -17134326 + Tigger5 DNA MER2_type 2243 2321 -2 * 2268 191 7 35 chr1 265059375 265059805 -17133859 - MER47B DNA MER2_type 0 418 1 2384 92 0 7 chr1 265060372 265060675 -17132989 + AluSq SINE Alu 1 301 -12 326 296 225 18 chr1 265061262 265061431 -17132233 + MIR SINE MIR 33 236 -26 331 303 30 30 chr1 265061823 265061988 -17131676 + (TATG)n Simple_repeat Simple_repeat 3 167 0 * 385 263 22 50 chr1 265061972 265062151 -17131513 + (CATG)n Simple_repeat Simple_repeat 3 176 0 308 197 14 42 chr1 265062774 265062845 -17130819 - MLT1K LTR MaLR -10 578 510 183 250 0 42 chr1 265064674 265064722 -17128942 + MIR SINE MIR 60 105 -103 3572 141 55 57 chr1 265065634 265065833 -17127831 - L1MC1 LINE L1 -1 6332 6134 2167 105 0 0 chr1 265065833 265066109 -17127555 - AluSg SINE Alu -13 297 22 3572 141 55 57 chr1 265066109 265066156 -17127508 - L1MC1 LINE L1 -199 6134 6088 13727 137 65 13 chr1 265066156 265067060 -17126604 - Tigger1 DNA MER2_type 0 2418 1563 2371 99 0 0 chr1 265067060 265067354 -17126310 - AluSc SINE Alu -15 294 1 13727 137 65 13 chr1 265067354 265068747 -17124917 - Tigger1 DNA MER2_type -855 1563 1 3572 141 55 57 chr1 265068747 265069270 -17124394 - L1MC1 LINE L1 -245 6088 5564 1390 275 76 72 chr1 265069663 265070851 -17122813 - L1MC5 LINE L1 -51 7910 6719 180 0 0 0 chr1 265070984 265071004 -17122660 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 394 280 26 63 chr1 265072499 265072688 -17120976 - MIR SINE MIR -24 238 57 22 35 0 0 chr1 265072715 265072744 -17120920 + AT_rich Low_complexity Low_complexity 1 29 0 644 138 28 0 chr1 265072775 265072884 -17120780 - FLAM_A SINE Alu -5 137 26 273 197 0 0 chr1 265073441 265073502 -17120162 + (TG)n Simple_repeat Simple_repeat 2 62 0 823 299 107 12 chr1 265073930 265074258 -17119406 + MARNA DNA Mariner 140 498 -88 2165 114 3 0 chr1 265078210 265078499 -17115165 - AluSc SINE Alu -19 290 1 180 0 0 0 chr1 265079084 265079104 -17114560 + (TG)n Simple_repeat Simple_repeat 1 20 0 1650 206 0 7 chr1 265080150 265080446 -17113218 - AluJo SINE Alu -18 294 1 362 149 40 0 chr1 265080534 265080608 -17113056 - L1PA16 LINE L1 -10 6156 6080 259 254 84 99 chr1 265080957 265081099 -17112565 - L3 LINE CR1 -287 1290 1151 248 250 0 0 chr1 265081169 265081221 -17112443 + MIR SINE MIR 205 256 -6 3445 189 77 18 chr1 265081776 265082515 -17111149 + LTR39 LTR ERV1 1 783 0 2833 95 21 51 chr1 265082564 265083036 -17110628 + LTR3b LTR ERVK 1 458 -42 775 220 17 6 chr1 265084005 265084178 -17109486 - L1ME LINE L1 -415 5706 5532 2264 98 3 25 chr1 265084265 265084580 -17109084 - AluSx SINE Alu -4 308 1 2345 82 14 0 chr1 265084939 265085233 -17108431 - AluY SINE Alu -13 298 1 185 297 18 90 chr1 265085706 265085817 -17107847 + MIR SINE MIR 90 192 -70 308 189 0 116 chr1 265085914 265086009 -17107655 - HsTC2 DNA Tc2 -1806 92 9 414 269 43 103 chr1 265086451 265086536 -17107128 + MIR SINE MIR 32 121 -141 1591 163 46 25 chr1 265086536 265086819 -17106845 - AluJo SINE Alu -23 289 1 414 269 43 103 chr1 265086819 265086967 -17106697 + MIR SINE MIR 121 251 -11 3783 148 22 10 chr1 265088945 265089066 -17104598 - MER41B LTR ERV1 0 635 517 2381 102 0 9 chr1 265089066 265089381 -17104283 + AluSx SINE Alu 1 312 0 3783 148 22 10 chr1 265089381 265089886 -17103778 - MER41B LTR ERV1 -118 517 1 2486 143 85 2 chr1 265092143 265092604 -17101060 - L1MB2 LINE L1 -12 6159 5661 1806 148 23 23 chr1 265092609 265092919 -17100745 - AluJo SINE Alu -2 310 1 750 244 51 5 chr1 265093253 265093450 -17100214 + MIR SINE MIR 46 251 -11 209 268 80 45 chr1 265093996 265094108 -17099556 + MIR SINE MIR 33 148 -60 335 271 9 28 chr1 265095050 265095157 -17098507 + MER94 DNA DNA 1 105 -29 2084 147 19 3 chr1 265099406 265099713 -17093951 - AluJo SINE Alu 0 312 1 1947 133 36 0 chr1 265099728 265100007 -17093657 - AluJb SINE Alu -23 289 1 4437 78 7 0 chr1 265102509 265103059 -17090605 - MER41A LTR ERV1 0 554 1 254 251 67 135 chr1 265103202 265103469 -17090195 - MER112 DNA MER1_type -10 250 2 902 224 0 0 chr1 265103889 265104054 -17089610 - FRAM SINE Alu -1 165 1 1353 174 42 86 chr1 265105332 265105693 -17087971 + MLT1B LTR MaLR 40 384 -6 316 286 48 0 chr1 265106442 265106547 -17087117 - MER69 DNA AcHobo 0 2526 2417 300 53 0 0 chr1 265107033 265107071 -17086593 + (GA)n Simple_repeat Simple_repeat 1 38 0 216 0 0 0 chr1 265107071 265107095 -17086569 + (TG)n Simple_repeat Simple_repeat 2 25 0 249 322 34 62 chr1 265107932 265108078 -17085586 + MIR SINE MIR 99 240 -22 2387 224 60 37 chr1 265108108 265108832 -17084832 + L1ME1 LINE L1 5439 6334 0 1777 110 0 8 chr1 265111294 265111549 -17082115 + AluSx SINE Alu 40 292 -20 234 305 135 48 chr1 265111874 265112267 -17081397 - MLT1H LTR MaLR 0 549 123 413 267 136 28 chr1 265112428 265112604 -17081060 + MIR SINE MIR 8 202 -60 3683 133 33 45 chr1 265113248 265113907 -17079757 + MER39B LTR ERV1 3 653 0 234 0 0 0 chr1 265113990 265114016 -17079648 + (CAA)n Simple_repeat Simple_repeat 2 27 0 189 224 53 53 chr1 265114322 265114398 -17079266 - MIR SINE MIR -14 248 173 363 271 72 104 chr1 265114756 265115007 -17078657 + MIR SINE MIR 14 256 -6 2097 92 17 0 chr1 265115360 265115655 -17078009 - AluY SINE Alu -11 300 1 354 294 111 26 chr1 265116069 265116412 -17077252 - L1ME4a LINE L1 -207 5914 5543 1725 151 0 11 chr1 265117986 265118271 -17075393 - AluJo SINE Alu -29 283 2 22 0 0 0 chr1 265118718 265118740 -17074924 + AT_rich Low_complexity Low_complexity 1 22 0 1932 204 47 2 chr1 265119520 265119946 -17073718 - L1MC3 LINE L1 -16 7769 7325 276 289 3 6 chr1 265120132 265120224 -17073440 - MIR SINE MIR -64 144 77 258 295 107 16 chr1 265120768 265120890 -17072774 - MER5B DNA MER1_type 0 178 46 2334 153 57 5 chr1 265121386 265121791 -17071873 - MSTB LTR MaLR 0 426 1 1542 198 133 78 chr1 265122822 265123333 -17070331 + MLT1F1 LTR MaLR 1 539 -28 182 357 41 20 chr1 265124753 265124851 -17068813 - L2 LINE L2 -21 3292 3193 213 299 147 61 chr1 265125206 265125648 -17068016 + L2 LINE L2 2256 2735 -579 307 274 226 0 chr1 265126219 265126325 -17067339 + MIR SINE MIR 112 241 -21 613 158 32 0 chr1 265126352 265126510 -17067154 + CT-rich Low_complexity Low_complexity 3 165 0 286 272 299 0 chr1 265126731 265126878 -17066786 + MIR SINE MIR 60 250 -12 285 256 16 41 chr1 265129263 265129384 -17064280 - MER112 DNA MER1_type 0 260 143 7832 214 40 55 chr1 265129412 265130756 -17062908 - L1MC1 LINE L1 -1 6612 5249 2057 104 7 0 chr1 265130756 265131043 -17062621 - AluSx SINE Alu -23 289 1 7832 214 40 55 chr1 265131043 265132384 -17061280 - L1MC1 LINE L1 -1364 5249 3889 872 107 15 8 chr1 265132384 265132515 -17061149 - AluSq/x SINE Alu -180 132 1 7832 214 40 55 chr1 265132515 265134521 -17059143 - L1MC1 LINE L1 -2724 3889 1853 2064 110 7 3 chr1 265134521 265134820 -17058844 + AluSx SINE Alu 1 300 -12 7832 214 40 55 chr1 265134820 265135017 -17058647 - L1MC1 LINE L1 -4760 1853 1654 2130 94 7 10 chr1 265135017 265135314 -17058350 - AluY SINE Alu -15 296 1 7832 214 40 55 chr1 265135314 265136086 -17057578 - L1MC1 LINE L1 -4959 1654 872 423 98 0 0 chr1 265136086 265136147 -17057517 + (TG)n Simple_repeat Simple_repeat 2 62 0 7832 214 40 55 chr1 265136147 265136957 -17056707 - L1MC1 LINE L1 -5741 872 20 2391 178 156 81 chr1 265138165 265138933 -17054731 - LTR1B LTR ERV1 0 826 1 261 262 183 73 chr1 265139214 265139378 -17054286 + MIR3 SINE MIR 22 203 -5 1586 182 79 3 chr1 265140459 265140799 -17052865 - L1MB3 LINE L1 0 6183 5818 328 258 82 0 chr1 265140982 265141079 -17052585 - L1ME4a LINE L1 -18 6103 5999 353 232 79 26 chr1 265141719 265141849 -17051815 - L1MB3 LINE L1 -435 5686 5551 857 317 87 49 chr1 265141935 265142335 -17051329 + L3 LINE CR1 942 1374 -203 1609 187 13 3 chr1 265142335 265142634 -17051030 - AluJo SINE Alu -6 306 5 857 317 87 49 chr1 265142634 265142829 -17050835 + L3 LINE CR1 1374 1560 -17 345 273 66 33 chr1 265143024 265143145 -17050519 + MIR SINE MIR 16 140 -68 198 310 60 10 chr1 265147061 265147161 -17046503 + L2 LINE L2 2976 3080 -192 205 224 104 15 chr1 265148446 265148513 -17045151 - MIR SINE MIR -56 206 134 237 178 0 0 chr1 265148576 265148621 -17045043 + (CGTG)n Simple_repeat Simple_repeat 2 46 0 513 234 190 44 chr1 265150242 265150468 -17043196 - MER112 DNA MER1_type -1 259 1 272 340 21 11 chr1 265150700 265150794 -17042870 + L2 LINE L2 2979 3073 -199 2371 70 0 6 chr1 265150876 265151188 -17042476 - AluSg SINE Alu 0 310 1 205 259 56 0 chr1 265152265 265152319 -17041345 + MIR SINE MIR 90 146 -116 514 286 130 51 chr1 265152508 265152878 -17040786 + L2 LINE L2 2827 3225 -88 208 304 124 48 chr1 265152882 265153057 -17040607 - MIR3 SINE MIR -63 145 3 1533 172 3 62 chr1 265154652 265154960 -17038704 - AluJo SINE Alu -14 298 9 1911 134 6 25 chr1 265154976 265155290 -17038374 - AluSx SINE Alu 0 312 5 191 231 0 123 chr1 265155595 265155660 -17038004 - L2 LINE L2 -2 3311 3255 260 311 55 24 chr1 265156620 265156784 -17036880 - MIR SINE MIR -35 227 59 209 333 0 25 chr1 265157572 265157653 -17036011 + MIR SINE MIR 14 92 -170 347 267 217 38 chr1 265157744 265157984 -17035680 + L2 LINE L2 3031 3313 0 248 229 0 0 chr1 265157978 265158026 -17035638 + MIR SINE MIR 202 249 -13 * 1457 192 56 0 chr1 265158419 265158706 -17034958 - AluJo SINE Alu -9 303 1 746 114 0 23 chr1 265158738 265158869 -17034795 - L1MA4 LINE L1 0 6300 6173 1189 248 154 7 chr1 265159014 265159469 -17034195 - L2 LINE L2 -682 2632 2111 258 305 47 42 chr1 265159628 265159818 -17033846 + MER20B DNA MER1_type 1 191 -592 1220 167 91 75 chr1 265160056 265160385 -17033279 + MLT1B LTR MaLR 1 338 -52 1776 125 68 4 chr1 265160385 265160664 -17033000 + AluJo SINE Alu 1 297 -15 1220 167 91 75 chr1 265160664 265160718 -17032946 + MLT1B LTR MaLR 338 390 0 180 319 8 118 chr1 265162258 265162338 -17031326 - MIR SINE MIR -1 261 197 1408 191 81 0 chr1 265162338 265162611 -17031053 + AluJo SINE Alu 1 295 -17 180 319 8 118 chr1 265162611 265162649 -17031015 - MIR SINE MIR -65 197 156 1054 256 47 11 chr1 265164176 265164569 -17029095 - L1MDa LINE L1 -3712 2848 2430 656 300 133 23 chr1 265164616 265164941 -17028723 - L1MDa LINE L1 -4379 2342 2054 2125 108 3 0 chr1 265164941 265165237 -17028427 - AluSq SINE Alu -16 297 1 656 300 133 23 chr1 265165237 265165775 -17027889 - L1MDa LINE L1 -4667 2054 1328 362 271 31 31 chr1 265166235 265166364 -17027300 - L1MDa LINE L1 -5936 594 466 190 364 61 30 chr1 265166544 265166643 -17027021 + MIR SINE MIR 105 206 -56 1216 189 77 23 chr1 265167293 265167553 -17026111 - AluJo SINE Alu -38 274 1 1903 272 66 32 chr1 265167826 265168369 -17025295 - L2 LINE L2 0 3313 2790 1033 188 45 130 chr1 265168369 265168768 -17024896 - MLT1A1 LTR MaLR 0 365 1 1903 272 66 32 chr1 265168768 265169143 -17024521 - L2 LINE L2 -523 2790 2353 564 303 82 12 chr1 265169143 265169387 -17024277 + MIR SINE MIR 2 262 0 1903 272 66 32 chr1 265169387 265169546 -17024118 - L2 LINE L2 -960 2353 2201 2287 148 3 6 chr1 265169617 265169955 -17023709 + MER1B DNA MER1_type 1 337 0 515 204 81 127 chr1 265170930 265171151 -17022513 - MER46C DNA MER2_type -125 213 3 463 325 97 67 chr1 265172380 265172801 -17020863 - L1M4 LINE L1 -2470 3676 3243 2137 58 0 0 chr1 265172850 265173111 -17020553 - AluY SINE Alu -10 301 41 488 280 154 9 chr1 265173546 265173760 -17019904 - MIR SINE MIR -5 257 13 323 119 0 34 chr1 265174017 265174076 -17019588 - FLAM SINE Alu 0 133 77 2146 111 0 13 chr1 265174280 265174596 -17019068 - AluSx SINE Alu 0 312 1 361 321 16 58 chr1 265176642 265176832 -17016832 + MER5A DNA MER1_type 3 184 -5 384 253 191 10 chr1 265177680 265177984 -17015680 + L1ME3A LINE L1 3070 3428 -2718 372 249 107 6 chr1 265178097 265178266 -17015398 + L1ME3A LINE L1 3588 3773 -2373 256 138 35 35 chr1 265178287 265178403 -17015261 + (TA)n Simple_repeat Simple_repeat 1 116 0 341 313 178 14 chr1 265178403 265178684 -17014980 + L1ME3A LINE L1 3796 4122 -2024 539 329 170 4 chr1 265178776 265179277 -17014387 + L1ME3A LINE L1 4230 4813 -1333 375 310 37 23 chr1 265179455 265179718 -17013946 - L1MEc LINE L1 -1333 4747 4474 633 320 81 8 chr1 265179942 265180597 -17013067 + L1ME3A LINE L1 5150 5864 -306 23 0 0 0 chr1 265180813 265180836 -17012828 + AT_rich Low_complexity Low_complexity 1 23 0 2269 78 0 3 chr1 265184158 265184453 -17009211 + AluSg SINE Alu 1 294 -16 2911 170 104 46 chr1 265184498 265185240 -17008424 - LTR48 LTR ERV1 -2 785 1 1794 154 7 7 chr1 265185757 265186063 -17007601 + AluJo SINE Alu 1 306 -6 310 286 70 53 chr1 265188845 265189016 -17004648 - MER5B DNA MER1_type 0 178 5 344 323 10 10 chr1 265189021 265189117 -17004547 - MIR SINE MIR -61 147 52 2002 232 118 5 chr1 265189133 265189793 -17003871 - L1MEc LINE L1 -2222 3858 3124 1316 140 60 34 chr1 265189793 265190184 -17003480 - MLT2A2 LTR ERVL 0 453 125 1730 280 120 40 chr1 265190184 265190850 -17002814 - L1MEc LINE L1 -4130 2131 1520 2017 97 0 14 chr1 265190850 265191140 -17002524 + AluSg SINE Alu 1 286 -24 1730 280 120 40 chr1 265191140 265191916 -17001748 - L1MEc LINE L1 -4741 1520 573 210 91 0 0 chr1 265191975 265192008 -17001656 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2109 85 4 4 chr1 265192008 265192289 -17001375 - AluSq SINE Alu -32 281 1 790 278 148 47 chr1 265192381 265192874 -17000790 - L1MEc LINE L1 -5526 544 2 902 134 67 39 chr1 265193065 265193244 -17000420 - AluJb SINE Alu -1 311 128 216 205 0 0 chr1 265194298 265194337 -16999327 + MIR SINE MIR 202 240 -22 319 331 67 12 chr1 265194836 265194966 -16998698 - MIR SINE MIR -62 146 19 2329 99 0 0 chr1 265195724 265196037 -16997627 + AluSp SINE Alu 1 313 0 1717 135 3 39 chr1 265200435 265200747 -16992917 + AluJo SINE Alu 11 311 -1 319 189 0 68 chr1 265202687 265202761 -16990903 + L1MCa LINE L1 1995 2063 -4363 * 337 258 22 22 chr1 265202734 265202823 -16990841 + L1MC4 LINE L1 6895 6983 -1339 331 240 0 73 chr1 265202779 265202875 -16990789 - L1MC4 LINE L1 -1340 6702 6614 * 310 263 0 74 chr1 265202832 265202927 -16990737 + L1MC4 LINE L1 6614 6701 -1341 * 321 277 11 43 chr1 265202981 265203075 -16990589 + L1MC4 LINE L1 6615 6705 -1337 304 277 0 53 chr1 265203006 265203100 -16990564 - L1MC4 LINE L1 -1340 6702 6614 * 214 239 31 19 chr1 265203110 265203269 -16990395 + (TATATG)n Simple_repeat Simple_repeat 4 164 0 321 272 10 48 chr1 265203371 265203474 -16990190 + L1MC4 LINE L1 6605 6703 -1339 336 188 21 94 chr1 265203482 265203578 -16990086 + L1MC4 LINE L1 6615 6703 -1339 471 214 244 0 chr1 265204661 265204792 -16988872 - MIR SINE MIR -1 261 99 198 118 0 0 chr1 265205127 265205161 -16988503 + (TCTG)n Simple_repeat Simple_repeat 3 36 0 225 333 25 0 chr1 265205213 265205294 -16988370 - L2 LINE L2 -110 3203 3121 1528 164 7 28 chr1 265205432 265205719 -16987945 + AluJo SINE Alu 1 281 -31 318 106 0 0 chr1 265205719 265205766 -16987898 + (CAAAC)n Simple_repeat Simple_repeat 5 51 0 382 244 130 15 chr1 265206029 265206160 -16987504 - MER103 DNA DNA -2 164 19 308 244 93 23 chr1 265206335 265206421 -16987243 + MER21B LTR ERV1 1 92 -771 2042 238 146 31 chr1 265206442 265207128 -16986536 + MER21B LTR ERV1 20 784 -79 608 278 82 5 chr1 265207931 265208125 -16985539 - MER3 DNA MER1_type 0 209 1 2171 94 0 7 chr1 265208289 265208588 -16985076 - AluSg SINE Alu -13 297 1 205 259 56 0 chr1 265209665 265209719 -16983945 + MIR SINE MIR 90 146 -116 514 286 130 51 chr1 265209908 265210278 -16983386 + L2 LINE L2 2827 3225 -88 208 304 124 48 chr1 265210282 265210457 -16983207 - MIR3 SINE MIR -63 145 3 366 147 18 73 chr1 265211510 265211619 -16982045 + AluSp/q SINE Alu 200 349 0 245 213 0 0 chr1 265211619 265211666 -16981998 + GA-rich Low_complexity Low_complexity 1 180 0 532 276 16 0 chr1 265211668 265211795 -16981869 + MER5A DNA MER1_type 61 189 0 239 282 239 21 chr1 265211798 265211940 -16981724 + MER5B DNA MER1_type 4 176 -2 213 263 50 71 chr1 265211952 265212051 -16981613 + MIR SINE MIR 20 116 -146 1178 204 137 10 chr1 265212376 265212716 -16980948 - MLT1B LTR MaLR 0 390 19 1565 131 96 11 chr1 265213609 265213869 -16979795 - AluJo SINE Alu -22 290 9 242 232 0 52 chr1 265214200 265214296 -16979368 + MIR SINE MIR 58 146 -62 1269 189 175 21 chr1 265215126 265215549 -16978115 + Charlie4a DNA MER1_type 13 500 -8 802 203 137 1 chr1 265215971 265216316 -16977348 + MSTB1 LTR MaLR 10 431 -1 2303 99 0 3 chr1 265217783 265218076 -16975588 + AluSx SINE Alu 1 292 -20 1567 78 0 5 chr1 265218364 265218555 -16975109 - AluSg SINE Alu -120 190 1 1685 195 0 16 chr1 265218559 265218862 -16974802 - AluJo SINE Alu -14 298 1 389 244 43 26 chr1 265218872 265218987 -16974677 + MER5B DNA MER1_type 27 143 -35 2345 101 0 0 chr1 265218989 265219286 -16974378 + AluSx SINE Alu 1 297 -15 269 102 0 0 chr1 265219286 265219335 -16974329 + Alu SINE Alu 260 308 0 193 325 75 33 chr1 265221141 265221261 -16972403 + L2 LINE L2 3139 3263 -9 261 0 0 0 chr1 265221456 265221485 -16972179 + (TG)n Simple_repeat Simple_repeat 2 30 0 2076 118 3 11 chr1 265222249 265222564 -16971100 - AluSq SINE Alu 0 314 2 189 0 0 0 chr1 265223481 265223502 -16970162 + (T)n Simple_repeat Simple_repeat 1 21 0 318 333 139 23 chr1 265223694 265223910 -16969754 + MIR SINE MIR 20 260 -2 2165 96 14 14 chr1 265226453 265226745 -16966919 - AluSc SINE Alu -17 292 1 396 273 89 30 chr1 265227251 265227561 -16966103 + L1MC4a LINE L1 5597 5729 -392 23 33 0 0 chr1 265228266 265228296 -16965368 + AT_rich Low_complexity Low_complexity 1 30 0 1444 151 26 31 chr1 265228307 265228378 -16965286 + Tigger4(Zombi) DNA MER2_type 1 71 -2660 2063 207 73 46 chr1 265228378 265229050 -16964614 + LTR8 LTR ERV1 2 691 0 1444 151 26 31 chr1 265229050 265229308 -16964356 + Tigger4(Zombi) DNA MER2_type 71 2731 0 198 271 94 62 chr1 265229337 265229433 -16964231 - MIR3 SINE MIR -29 179 81 2188 117 17 0 chr1 265229951 265230251 -16963413 + AluSp SINE Alu 1 305 -8 2389 92 0 0 chr1 265230261 265230553 -16963111 + AluSx SINE Alu 1 292 -20 397 310 102 70 chr1 265230577 265230786 -16962878 + L2 LINE L2 2372 2573 -740 1738 149 84 3 chr1 265230786 265231108 -16962556 - MER7A DNA MER2_type 0 346 1 397 310 102 70 chr1 265231108 265231763 -16961901 + L2 LINE L2 2573 3268 -45 1292 168 139 83 chr1 265231934 265232014 -16961650 + MSTD LTR MaLR 1 75 -321 2195 108 7 30 chr1 265232014 265232319 -16961345 - AluSx SINE Alu -14 298 1 1292 168 139 83 chr1 265232319 265232613 -16961051 + MSTD LTR MaLR 75 396 0 923 279 132 8 chr1 265232695 265233050 -16960614 - L1MD2 LINE L1 -219 6140 5742 296 135 0 19 chr1 265234470 265234522 -16959142 - L1MA5A LINE L1 -451 5846 5796 2090 131 65 5 chr1 265234529 265234927 -16958737 + L1MA5A LINE L1 5872 6293 -4 2382 98 3 3 chr1 265235328 265235635 -16958029 + AluSx SINE Alu 1 307 -5 192 97 0 0 chr1 265237416 265237447 -16956217 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 222 256 139 0 chr1 265238279 265238365 -16955299 + MIR SINE MIR 35 132 -130 22 0 0 0 chr1 265240610 265240632 -16953032 + AT_rich Low_complexity Low_complexity 1 22 0 268 314 32 1 chr1 265241045 265241163 -16952501 - MIR SINE MIR -58 150 50 1430 148 105 23 chr1 265241264 265241521 -16952143 - AluJo SINE Alu -34 278 1 292 180 0 0 chr1 265241613 265241663 -16952001 + Charlie1 DNA MER1_type 2678 2727 -34 1230 183 33 124 chr1 265242195 265242589 -16951075 + MLT1D-int LTR MaLR 1014 1371 0 692 223 81 123 chr1 265242591 265242654 -16951010 + MLT1D LTR MaLR 3 67 -438 3649 157 23 11 chr1 265242654 265243317 -16950347 - LTR51 LTR ERV1 0 671 1 692 223 81 123 chr1 265243317 265243465 -16950199 + MLT1D LTR MaLR 67 193 -312 1721 176 0 30 chr1 265243465 265243767 -16949897 + AluJb SINE Alu 1 293 -19 692 223 81 123 chr1 265243767 265243935 -16949729 + MLT1D LTR MaLR 193 367 -138 7065 20 0 1 chr1 265244116 265244975 -16948689 - L1PA3 LINE L1 -1703 4443 3586 7536 23 1 0 chr1 265244975 265246678 -16946986 + L1PA3 LINE L1 4453 6155 0 1383 238 29 58 chr1 265247484 265248002 -16945662 - MLT1D LTR MaLR -2 503 1 2239 95 27 3 chr1 265249230 265249524 -16944140 - AluSx SINE Alu -11 301 1 251 278 263 0 chr1 265249843 265249976 -16943688 - L3 LINE CR1 -160 1417 1250 915 253 7 62 chr1 265250285 265250558 -16943106 + MIR SINE MIR 5 262 0 251 261 239 0 chr1 265250847 265250981 -16942683 - L3 LINE CR1 -160 1417 1252 477 196 125 0 chr1 265251312 265251424 -16942240 - FLAM_A SINE Alu -7 126 1 3566 202 50 17 chr1 265251451 265252228 -16941436 + L1MB7 LINE L1 5380 6182 -2 376 263 17 25 chr1 265252345 265252463 -16941201 + L1MD2 LINE L1 6024 6140 -219 865 81 0 0 chr1 265252478 265252589 -16941075 + AluSc SINE Alu 191 301 -8 2182 154 19 57 chr1 265252806 265253042 -16940622 - MSTB LTR MaLR 0 413 170 1862 172 0 13 chr1 265253042 265253350 -16940314 - AluSx SINE Alu -8 304 1 2245 117 0 0 chr1 265253358 265253649 -16940015 - AluSx SINE Alu -21 291 1 2182 154 19 57 chr1 265253649 265253845 -16939819 - MSTB LTR MaLR -250 163 1 2504 75 7 0 chr1 265254029 265254335 -16939329 - AluY SINE Alu -3 308 1 206 118 0 0 chr1 265254345 265254379 -16939285 + (A)n Simple_repeat Simple_repeat 1 34 0 207 304 44 44 chr1 265256262 265256397 -16937267 - MIR SINE MIR -81 181 47 2040 108 6 73 chr1 265257587 265257903 -16935761 + AluSq SINE Alu 1 295 -18 319 232 144 40 chr1 265257916 265258041 -16935623 + L2 LINE L2 3167 3304 -9 293 336 120 0 chr1 265258116 265258241 -16935423 + L2 LINE L2 3171 3310 -3 34 24 0 0 chr1 265258492 265258533 -16935131 + AT_rich Low_complexity Low_complexity 1 41 0 742 174 0 34 chr1 265258969 265259118 -16934546 - FRAM SINE Alu -8 168 25 291 303 109 0 chr1 265259498 265259617 -16934047 + L2 LINE L2 3139 3270 -2 180 77 0 0 chr1 265259744 265259770 -16933894 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1528 149 4 69 chr1 265259827 265259961 -16933703 - AluJo SINE Alu -51 261 153 2388 108 0 0 chr1 265259961 265260266 -16933398 - AluSx SINE Alu -7 305 1 1528 149 4 69 chr1 265260266 265260406 -16933258 - AluJo SINE Alu -159 153 5 200 246 0 15 chr1 265260744 265260809 -16932855 + GA-rich Low_complexity Low_complexity 1 64 0 846 146 0 0 chr1 265261132 265261255 -16932409 - FLAM_C SINE Alu -20 123 1 198 0 0 0 chr1 265262112 265262134 -16931530 + (T)n Simple_repeat Simple_repeat 1 22 0 320 299 127 44 chr1 265262786 265263147 -16930517 - L3 LINE CR1 -133 1444 1054 2203 92 14 0 chr1 265263273 265263577 -16930087 - AluSq SINE Alu 0 308 1 1683 160 39 11 chr1 265263586 265263868 -16929796 - AluJo SINE Alu -20 292 3 387 217 14 0 chr1 265263869 265263938 -16929726 - MER5A DNA MER1_type -113 76 7 215 122 49 0 chr1 265264182 265264223 -16929441 + MIR SINE MIR 110 152 -110 2689 55 0 3 chr1 265264236 265264547 -16929117 + AluY SINE Alu 1 310 -1 1975 158 0 0 chr1 265265090 265265388 -16928276 + AluJo SINE Alu 1 298 -14 373 280 7 13 chr1 265265492 265265642 -16928022 + (GGGTG)n Simple_repeat Simple_repeat 3 151 0 691 195 9 0 chr1 265266146 265266368 -16927296 + CT-rich Low_complexity Low_complexity 1 224 0 180 0 0 0 chr1 265266409 265266429 -16927235 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 763 158 25 0 chr1 265267983 265268103 -16925561 + FLAM_C SINE Alu 2 124 -19 356 300 0 11 chr1 265269500 265269590 -16924074 + L1MC4 LINE L1 6615 6703 -1339 237 292 0 0 chr1 265269625 265269714 -16923950 + L1MC4 LINE L1 6615 6703 -1339 240 261 45 0 chr1 265269740 265269828 -16923836 + L1MC4 LINE L1 6614 6705 -1337 227 278 22 22 chr1 265269778 265269868 -16923796 - L1MC4 LINE L1 -1339 6703 6614 * 279 300 0 0 chr1 265269878 265269968 -16923696 - L1MC4 LINE L1 -1339 6703 6614 198 206 0 0 chr1 265270950 265270984 -16922680 + L2 LINE L2 3207 3240 -32 2236 93 3 39 chr1 265273577 265273889 -16919775 - AluSg SINE Alu -9 301 1 1598 121 156 0 chr1 265275076 265275332 -16918332 - AluJb SINE Alu -6 296 1 22 0 0 0 chr1 265276458 265276480 -16917184 + AT_rich Low_complexity Low_complexity 1 22 0 182 200 29 0 chr1 265278075 265278110 -16915554 + L2 LINE L2 3217 3252 -20 271 226 0 0 chr1 265278147 265278200 -16915464 + L2 LINE L2 3257 3309 -4 314 193 12 15 chr1 265279659 265279734 -16913930 - L1MA5A LINE L1 -205 6095 6016 783 131 0 0 chr1 265279734 265279856 -16913808 + L1MA5A LINE L1 6173 6294 -3 2205 131 0 3 chr1 265279865 265280178 -16913486 + AluSq SINE Alu 1 312 -1 1422 197 3 55 chr1 265280195 265280504 -16913160 - AluJo SINE Alu -19 293 1 1562 141 21 113 chr1 265282667 265282994 -16910670 - AluJb SINE Alu -15 297 1 1116 128 0 0 chr1 265283257 265283406 -16910258 - AluSg/x SINE Alu -27 285 137 329 305 172 70 chr1 265283426 265283898 -16909766 + L1ME LINE L1 4883 5402 -744 547 262 104 6 chr1 265284040 265284223 -16909441 + L1ME LINE L1 5589 5789 -332 2061 139 3 13 chr1 265284861 265285171 -16908493 + AluJo SINE Alu 1 307 -5 505 158 11 11 chr1 265285313 265285484 -16908180 - FLAM_A SINE Alu 0 209 39 342 159 51 14 chr1 265285589 265285727 -16907937 + (CA)n Simple_repeat Simple_repeat 1 143 0 702 187 0 0 chr1 265288743 265289106 -16904558 + (CA)n Simple_repeat Simple_repeat 1 363 0 834 192 0 0 chr1 265289117 265289617 -16904047 + (CA)n Simple_repeat Simple_repeat 1 500 0 204 176 20 39 chr1 265291597 265291648 -16902016 + L3 LINE CR1 838 887 -690 1941 202 94 59 chr1 265291839 265292172 -16901492 - MLT1E3 LTR MaLR 0 624 259 2439 96 3 3 chr1 265292172 265292485 -16901179 + AluSq SINE Alu 1 313 0 1941 202 94 59 chr1 265292485 265292744 -16900920 - MLT1E3 LTR MaLR -365 259 11 772 259 50 66 chr1 265292966 265293074 -16900590 + L1ME4a LINE L1 5485 5593 -528 4082 136 44 8 chr1 265293074 265293785 -16899879 + L1MA8 LINE L1 5556 6291 0 772 259 50 66 chr1 265293785 265294100 -16899564 + L1ME4a LINE L1 5593 5901 -220 24 0 0 0 chr1 265295201 265295225 -16898439 + AT_rich Low_complexity Low_complexity 1 24 0 389 216 117 21 chr1 265295907 265296036 -16897628 + MIR SINE MIR 6 149 -69 875 233 35 0 chr1 265296124 265296326 -16897338 - MER3 DNA MER1_type 0 209 1 659 294 19 48 chr1 265297280 265297314 -16896350 + MIR SINE MIR 2 35 -227 2449 74 0 0 chr1 265297314 265297611 -16896053 + AluY SINE Alu 1 297 -14 659 294 19 48 chr1 265297611 265297845 -16895819 + MIR SINE MIR 35 262 0 463 206 39 0 chr1 265298876 265298978 -16894686 + Tigger5 DNA MER2_type 1 106 -2217 1552 122 9 4 chr1 265299163 265299392 -16894272 - MER30 DNA MER1_type 0 230 1 1743 147 7 45 chr1 265300024 265300125 -16893539 - AluSx SINE Alu -14 298 195 2403 114 0 0 chr1 265300125 265300432 -16893232 - AluSg SINE Alu -3 307 1 1743 147 7 45 chr1 265300432 265300616 -16893048 - AluSx SINE Alu -117 195 24 916 302 51 93 chr1 265300829 265301430 -16892234 - L2 LINE L2 -466 2848 2288 1455 184 10 52 chr1 265301430 265301735 -16891929 - AluJo SINE Alu -20 292 1 916 302 51 93 chr1 265301735 265301937 -16891727 - L2 LINE L2 -1026 2288 2079 926 328 91 14 chr1 265302425 265302864 -16890800 + L2 LINE L2 2804 3276 -37 709 282 69 33 chr1 265302859 265303006 -16890658 - L2 LINE L2 -16 3297 3157 * 1743 116 58 61 chr1 265303006 265303140 -16890524 + MER2 DNA MER2_type 1 134 -210 2245 105 0 0 chr1 265303140 265303436 -16890228 - AluSx SINE Alu -16 296 1 1743 116 58 61 chr1 265303436 265303646 -16890018 + MER2 DNA MER2_type 134 344 0 709 282 69 33 chr1 265303646 265303803 -16889861 - L2 LINE L2 -156 3157 2982 384 293 49 16 chr1 265303992 265304115 -16889549 + L2 LINE L2 3185 3311 -2 921 237 37 19 chr1 265304217 265304432 -16889232 + MER58A DNA MER1_type 6 224 0 4890 70 3 8 chr1 265304544 265305183 -16888481 - L1PA6 LINE L1 0 6154 5519 465 71 0 0 chr1 265305186 265305242 -16888422 + Alu SINE Alu 225 280 -29 381 218 149 0 chr1 265305380 265305467 -16888197 - MER5A DNA MER1_type -80 109 10 209 268 0 0 chr1 265306133 265306174 -16887490 + polypurine Low_complexity Low_complexity 4 44 0 11500 47 0 1 chr1 265306182 265307670 -16885994 + L1P LINE L1 919 2405 -3741 7847 20 1 0 chr1 265307770 265309268 -16884396 + L1PA3 LINE L1 4652 6151 -4 22 70 0 0 chr1 265309268 265309311 -16884353 + AT_rich Low_complexity Low_complexity 1 43 0 449 343 99 21 chr1 265310130 265310372 -16883292 - L1MC/D LINE L1 -2251 5557 5297 1192 159 30 35 chr1 265311027 265311259 -16882405 - AluJo SINE Alu -1 311 81 1474 179 51 26 chr1 265313128 265313401 -16880263 + AluJo SINE Alu 2 281 -31 551 280 27 45 chr1 265313503 265313860 -16879804 - L1ME4a LINE L1 -170 5951 5596 336 209 32 139 chr1 265314128 265314315 -16879349 - L2 LINE L2 -5 3308 3142 1025 189 20 10 chr1 265314444 265314640 -16879024 - AluJb SINE Alu -82 230 33 8185 18 11 5 chr1 265315368 265316490 -16877174 - L1PA3 LINE L1 -3 6152 5030 1066 184 45 5 chr1 265317294 265317495 -16876169 - MER3 DNA MER1_type 0 209 1 5268 148 30 45 chr1 265318320 265319383 -16874281 + L1MA9 LINE L1 5260 6306 -6 561 176 92 15 chr1 265320419 265320550 -16873114 + L1MA10 LINE L1 6179 6319 -15 28796 109 8 29 chr1 265320691 265325933 -16867731 - L1P3 LINE L1 -1235 5226 4 2966 126 14 7 chr1 265325935 265326379 -16867285 - MER4D LTR ERV1 -425 447 1 871 162 27 0 chr1 265326380 265326528 -16867136 + L1MC1 LINE L1 5695 5846 -498 576 143 0 0 chr1 265326561 265326652 -16867012 + L1MC1 LINE L1 6243 6333 0 7381 136 10 9 chr1 265326789 265329884 -16863780 + L1PB1 LINE L1 1817 6151 0 446 291 5 95 chr1 265329965 265330068 -16863596 - MLT2E LTR ERVL -410 218 138 2438 97 0 0 chr1 265330068 265330377 -16863287 - AluY SINE Alu -2 309 1 446 291 5 95 chr1 265330377 265330462 -16863202 - MLT2E LTR ERVL -490 138 47 1450 219 76 0 chr1 265330503 265330804 -16862860 - HsTC2 DNA Tc2 -1556 342 19 2842 137 26 5 chr1 265330807 265331224 -16862440 + MSTB LTR MaLR 1 426 0 210 206 0 118 chr1 265331231 265331299 -16862365 - MIR SINE MIR -106 156 97 210 375 42 6 chr1 265331331 265331500 -16862164 - MIR SINE MIR -32 176 2 427 205 46 67 chr1 265331541 265331736 -16861928 + MER112 DNA MER1_type 2 192 -68 837 280 72 55 chr1 265332275 265332776 -16860888 + L1MEc LINE L1 1115 1641 -5080 2503 64 0 0 chr1 265332776 265333071 -16860593 - AluY SINE Alu -16 295 1 837 280 72 55 chr1 265333071 265333519 -16860145 + L1MEc LINE L1 1641 2080 -4641 216 182 0 0 chr1 265333583 265333627 -16860037 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 53 0 0 chr1 265333708 265333746 -16859918 + AT_rich Low_complexity Low_complexity 1 38 0 259 207 19 54 chr1 265333817 265333969 -16859695 + L1MEc LINE L1 2452 2635 -3942 482 247 0 0 chr1 265333978 265334067 -16859597 - FLAM_A SINE Alu -53 89 1 250 304 48 8 chr1 265334094 265334219 -16859445 + LTR67 LTR ERVL 428 557 0 225 222 74 0 chr1 265335066 265335120 -16858544 + Charlie8 DNA MER1_type 389 446 -1971 369 316 215 0 chr1 265335121 265335279 -16858385 + MER91A DNA MER1_type 1 192 -4 2001 178 22 22 chr1 265335404 265335425 -16858239 - MLT1A1 LTR MaLR 0 365 345 4846 194 32 5 chr1 265335425 265336302 -16857362 - MER54A LTR ERVL 0 901 1 2001 178 22 22 chr1 265336302 265336645 -16857019 - MLT1A1 LTR MaLR -19 346 1 1708 124 26 26 chr1 265336914 265337187 -16856477 - AluJo SINE Alu -10 302 30 451 295 63 8 chr1 265337417 265337621 -16856043 + LTR16A LTR ERVL 245 456 -1 1851 292 41 38 chr1 265337628 265339367 -16854297 + ERVL LTR ERVL 3 1851 -3145 282 100 60 0 chr1 265339373 265339423 -16854241 - MLT2C2 LTR ERVL -3 517 465 25 75 0 0 chr1 265339429 265339482 -16854182 + AT_rich Low_complexity Low_complexity 1 53 0 292 154 0 19 chr1 265339485 265339537 -16854127 + MLT2B1 LTR ERVL 470 520 0 2047 158 41 14 chr1 265339592 265339958 -16853706 - MLT2C2 LTR ERVL -88 376 1 1203 341 63 22 chr1 265340131 265340762 -16852902 + ERVL LTR ERVL 2106 2762 -2892 907 311 48 11 chr1 265340753 265340798 -16852866 + ERVL LTR ERVL 2951 2993 -2771 * 1575 153 37 37 chr1 265340798 265341093 -16852571 + AluJo SINE Alu 1 295 -17 907 311 48 11 chr1 265341093 265341404 -16852260 + ERVL LTR ERVL 2993 3320 -2444 1549 181 99 153 chr1 265341425 265341505 -16852159 - LTR8A LTR ERV1 -9 718 635 1931 141 21 0 chr1 265341505 265341796 -16851868 + AluSx SINE Alu 1 297 -15 1549 181 99 153 chr1 265341796 265342474 -16851190 - LTR8A LTR ERV1 -92 635 1 839 307 75 25 chr1 265342475 265343006 -16850658 + ERVL LTR ERVL 3291 3848 -1637 540 283 90 0 chr1 265343167 265343344 -16850320 + ERVL LTR ERVL 4081 4276 -1212 428 339 16 36 chr1 265343807 265344058 -16849606 + ERVL LTR ERVL 5012 5257 -507 733 265 135 41 chr1 265344312 265344674 -16848990 + LTR16A1 LTR ERVL 56 451 -6 1048 149 7 0 chr1 265344781 265344935 -16848729 - AluJo/FRAM SINE Alu -23 289 135 1458 177 74 0 chr1 265344938 265345221 -16848443 - AluSx SINE Alu -7 305 2 278 261 14 0 chr1 265345432 265345501 -16848163 + MLT1K LTR MaLR 519 588 0 1481 157 57 0 chr1 265345665 265345945 -16847719 - L1MB3 LINE L1 -8 6175 5880 189 0 0 0 chr1 265346232 265346253 -16847411 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 341 111 0 0 chr1 265346253 265346298 -16847366 - LTR23 LTR ERV1 -73 364 320 216 0 0 0 chr1 265346418 265346442 -16847222 + (TAA)n Simple_repeat Simple_repeat 1 24 0 269 303 115 2 chr1 265346444 265346574 -16847090 + MIR SINE MIR 23 165 -66 181 363 98 10 chr1 265346634 265346736 -16846928 - MIR SINE MIR -129 133 23 3864 53 2 0 chr1 265349004 265349457 -16844207 - L1PA7 LINE L1 0 6154 5701 279 0 0 0 chr1 265349648 265349679 -16843985 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 557 121 33 33 chr1 265349682 265349773 -16843891 + FLAM_C SINE Alu 27 117 -26 339 227 40 0 chr1 265349801 265349876 -16843788 + MER21B LTR ERV1 13 90 -773 603 260 78 0 chr1 265350323 265350477 -16843187 - MIR SINE MIR -48 214 49 2566 181 30 8 chr1 265350512 265351041 -16842623 + L1MB7 LINE L1 5372 5912 -272 2086 168 53 19 chr1 265351071 265351482 -16842182 - MER65A LTR ERV1 -20 425 1 5288 214 81 59 chr1 265351483 265353397 -16840267 - MER65A-int LTR ERV1 -1 5094 2949 2279 93 3 7 chr1 265353397 265353697 -16839967 + AluSc SINE Alu 1 299 -10 5288 214 81 59 chr1 265353697 265353960 -16839704 - MER65A-int LTR ERV1 -2146 2949 2693 1173 187 57 61 chr1 265353968 265354503 -16839161 - MER65A-int LTR ERV1 -4252 619 56 2475 142 46 25 chr1 265354554 265354990 -16838674 - MER65A LTR ERV1 0 445 1 1431 181 8 8 chr1 265354991 265355250 -16838414 + L1MB7 LINE L1 5910 6168 -16 820 177 22 116 chr1 265355409 265355674 -16837990 + L1ME1 LINE L1 5847 6085 -81 300 27 0 0 chr1 265355674 265355711 -16837953 + (TG)n Simple_repeat Simple_repeat 2 38 0 820 177 22 116 chr1 265355711 265355747 -16837917 + L1ME1 LINE L1 6085 6123 -43 1219 197 10 0 chr1 265355749 265355957 -16837707 + MER2 DNA MER2_type 1 210 -135 22 0 0 0 chr1 265355968 265355990 -16837674 + AT_rich Low_complexity Low_complexity 1 22 0 339 188 31 0 chr1 265355990 265356054 -16837610 + MER2 DNA MER2_type 280 345 0 295 170 0 0 chr1 265356054 265356107 -16837557 + L1MA10 LINE L1 6282 6334 0 2317 153 11 0 chr1 265356236 265356601 -16837063 - MLT1B LTR MaLR 0 390 22 290 341 63 24 chr1 265357160 265357286 -16836378 - MIR SINE MIR -74 188 58 216 0 0 0 chr1 265357309 265357333 -16836331 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 818 196 0 0 chr1 265358092 265358225 -16835439 + FLAM_A SINE Alu 1 133 0 949 229 84 25 chr1 265358231 265358515 -16835149 + L1ME3 LINE L1 5815 6115 -47 417 234 129 8 chr1 265358646 265358770 -16834894 - MER103 DNA DNA -8 158 20 3329 176 22 17 chr1 265360341 265360927 -16832737 + MER77 LTR ERV1 1 589 -16 429 304 112 61 chr1 265361453 265361765 -16831899 + L2 LINE L2 2940 3267 -5 1957 133 32 48 chr1 265362098 265362448 -16831216 + L1MB3 LINE L1 5814 6159 -24 2188 121 87 3 chr1 265362448 265362794 -16830870 + THE1C LTR MaLR 1 375 0 1957 133 32 48 chr1 265362794 265362819 -16830845 + L1MB3 LINE L1 6159 6183 0 1776 191 5 5 chr1 265364219 265364586 -16829078 + L1MA4 LINE L1 4929 5295 -851 364 286 0 0 chr1 265364586 265364663 -16829001 - L1MC4 LINE L1 -1352 6690 6614 198 136 0 0 chr1 265364667 265364711 -16828953 + (TA)n Simple_repeat Simple_repeat 2 45 0 5434 152 19 6 chr1 265364711 265365014 -16828650 + L1MA4 LINE L1 5313 5611 -689 4922 63 63 3 chr1 265365014 265365637 -16828027 - PABL_A LTR ERV1 0 660 1 5434 152 19 6 chr1 265365637 265366298 -16827366 + L1MA4 LINE L1 5611 6289 -11 341 192 64 0 chr1 265366888 265366966 -16826698 - L1MB3 LINE L1 0 6183 6101 544 176 0 0 chr1 265366968 265367059 -16826605 - MER47B DNA MER2_type -1 417 327 1958 139 7 4 chr1 265367059 265367340 -16826324 + AluJo SINE Alu 1 282 -30 221 230 14 0 chr1 265367344 265367418 -16826246 + (TA)n Simple_repeat Simple_repeat 1 75 0 1928 154 18 35 chr1 265367430 265367768 -16825896 - MER47B DNA MER2_type -83 335 4 3943 166 54 25 chr1 265367768 265368980 -16824684 - L1MB3 LINE L1 -83 6100 4856 646 266 92 40 chr1 265369759 265370139 -16823525 - L1ME LINE L1 -385 5785 5386 292 266 53 32 chr1 265370320 265370414 -16823250 - MER5B DNA MER1_type -79 99 4 277 360 75 5 chr1 265370580 265370766 -16822898 + L2 LINE L2 2719 2917 -397 1341 204 4 15 chr1 265370775 265371040 -16822624 - MER4D LTR ERV1 -87 816 555 1668 142 7 27 chr1 265371122 265371418 -16822246 - MER49 LTR ERV1 -633 290 1 198 344 16 0 chr1 265371419 265371483 -16822181 + L2 LINE L2 3208 3272 0 2261 117 0 0 chr1 265371589 265371887 -16821777 + AluSq SINE Alu 1 298 -15 374 115 81 7 chr1 265372771 265372919 -16820745 + (TG)n Simple_repeat Simple_repeat 2 160 0 457 157 130 17 chr1 265373033 265373148 -16820516 + MER5B DNA MER1_type 1 128 -50 406 234 241 21 chr1 265373180 265373325 -16820339 - MER5A DNA MER1_type 0 189 13 401 271 93 20 chr1 265373447 265373598 -16820066 - MER5B DNA MER1_type -16 162 1 420 146 65 26 chr1 265373883 265374228 -16819436 + (CA)n Simple_repeat Simple_repeat 1 358 0 1211 172 10 5 chr1 265375072 265375270 -16818394 - AluJb SINE Alu -107 205 7 389 106 0 45 chr1 265375282 265375348 -16818316 + MER47B DNA MER2_type 356 418 0 190 29 57 29 chr1 265375963 265375998 -16817666 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 240 250 0 0 chr1 265376134 265376198 -16817466 - MLT2D LTR ERVL 0 414 351 683 218 55 6 chr1 265376236 265376401 -16817263 - MLT2D LTR ERVL -50 364 192 1464 87 0 0 chr1 265376403 265376588 -16817076 - AluSq SINE Alu 0 313 129 221 375 59 0 chr1 265377154 265377290 -16816374 - MIR3 SINE MIR -7 201 58 187 303 109 50 chr1 265377345 265377464 -16816200 + MIR SINE MIR 61 186 -76 1747 190 3 22 chr1 265378183 265378494 -16815170 + AluJb SINE Alu 1 305 -7 318 210 12 62 chr1 265378524 265378605 -16815059 + L2 LINE L2 3196 3272 0 453 303 58 62 chr1 265380068 265380309 -16813355 + MIR SINE MIR 23 262 0 534 354 86 3 chr1 265380358 265380660 -16813004 - L3 LINE CR1 -88 1489 1163 904 189 70 15 chr1 265381040 265381241 -16812423 + MER58A DNA MER1_type 3 214 -10 281 228 337 0 chr1 265381246 265381338 -16812326 - MER5A DNA MER1_type -25 164 42 409 299 30 12 chr1 265383236 265383400 -16810264 + LTR33 LTR ERVL 1 167 -354 252 271 8 42 chr1 265383636 265383754 -16809910 + LTR33 LTR ERVL 402 515 -6 212 299 26 0 chr1 265383843 265383920 -16809744 + GA-rich Low_complexity Low_complexity 4 82 0 196 341 81 41 chr1 265384674 265384797 -16808867 - L2 LINE L2 -258 3014 2887 247 308 0 9 chr1 265386703 265386810 -16806854 + (TA)n Simple_repeat Simple_repeat 2 107 0 329 182 45 0 chr1 265386866 265386932 -16806732 - L1MCa LINE L1 -4362 2064 1996 305 340 62 19 chr1 265386943 265387105 -16806559 - L1MC4 LINE L1 -1339 6703 6535 2014 151 12 15 chr1 265387532 265387870 -16805794 + MER7A DNA MER2_type 11 345 -1 2201 103 13 7 chr1 265387999 265388301 -16805363 - AluSx SINE Alu -8 304 1 347 367 33 57 chr1 265388444 265388654 -16805010 + MIR SINE MIR 23 227 -35 201 74 0 0 chr1 265389306 265389333 -16804331 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 2152 105 55 19 chr1 265389356 265389718 -16803946 + THE1C LTR MaLR 1 375 0 285 264 118 28 chr1 265389811 265389955 -16803709 - MIR SINE MIR -46 216 60 280 276 46 92 chr1 265390735 265391018 -16802646 - L2 LINE L2 -156 3116 2847 215 307 147 0 chr1 265392001 265392076 -16801588 + MIR SINE MIR 106 191 -71 2385 95 0 0 chr1 265392237 265392532 -16801132 + AluSx SINE Alu 1 295 -17 2192 119 3 0 chr1 265393676 265393969 -16799695 + AluSx SINE Alu 1 294 -18 2384 95 0 0 chr1 265393969 265394265 -16799399 + AluY SINE Alu 1 296 -15 509 306 126 10 chr1 265395504 265395710 -16797954 + MIR SINE MIR 21 250 -12 1760 164 27 10 chr1 265396357 265396655 -16797009 + AluJo SINE Alu 1 303 -9 213 286 114 19 chr1 265396782 265396887 -16796777 - MIR SINE MIR -73 189 75 255 235 136 12 chr1 265397407 265397488 -16796176 + L2 LINE L2 3223 3313 0 711 227 26 106 chr1 265399396 265399669 -16793995 - MIR SINE MIR -6 256 6 273 277 96 0 chr1 265400692 265400775 -16792889 - MIR SINE MIR -121 141 51 183 281 86 65 chr1 265401661 265401800 -16791864 - MER5B DNA MER1_type -8 170 29 270 256 183 7 chr1 265402249 265402386 -16791278 + MER117 DNA MER1_type 1 161 -36 1604 173 57 14 chr1 265402636 265402919 -16790745 - AluJo SINE Alu -17 295 1 250 323 102 36 chr1 265402929 265403074 -16790590 + L1ME4a LINE L1 5713 5847 -274 2277 114 0 0 chr1 265403074 265403373 -16790291 + AluSg SINE Alu 1 299 -11 250 323 102 36 chr1 265403373 265403611 -16790053 + L1ME4a LINE L1 5847 6121 0 226 275 100 12 chr1 265403680 265403760 -16789904 + MIR3 SINE MIR 116 202 -6 234 0 0 0 chr1 265404590 265404616 -16789048 + (T)n Simple_repeat Simple_repeat 1 26 0 239 0 32 0 chr1 265404745 265404776 -16788888 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 365 200 15 0 chr1 265405673 265405738 -16787926 + MIR3 SINE MIR 120 185 -23 299 329 82 7 chr1 265405769 265405915 -16787749 + MIR SINE MIR 92 248 -14 484 300 21 31 chr1 265406531 265406723 -16786941 + MIR SINE MIR 42 232 -30 230 228 102 87 chr1 265407728 265407855 -16785809 - MIR SINE MIR -50 212 84 191 296 180 42 chr1 265408127 265408461 -16785203 + L2 LINE L2 2378 2757 -557 631 234 143 39 chr1 265408696 265408927 -16784737 - MIR SINE MIR -6 256 2 205 327 46 78 chr1 265408927 265409063 -16784601 + L2 LINE L2 3115 3245 -27 343 265 113 47 chr1 265410027 265410201 -16783463 - MIR SINE MIR -63 145 1 447 300 9 0 chr1 265411479 265411589 -16782075 + MER81 DNA DNA 1 111 -3 1068 129 11 0 chr1 265411642 265411820 -16781844 - LTR29 LTR ERV1 -59 563 384 243 88 0 0 chr1 265411985 265412019 -16781645 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1645 167 32 25 chr1 265412023 265412305 -16781359 - AluJb SINE Alu -27 285 2 1777 132 16 71 chr1 265412306 265412617 -16781047 - AluJo SINE Alu -13 299 6 253 215 84 75 chr1 265413342 265413449 -16780215 + MIR SINE MIR 28 135 -127 278 245 106 21 chr1 265413523 265413617 -16780047 - MIR SINE MIR -97 165 64 219 282 42 28 chr1 265413623 265413694 -16779970 + MIR SINE MIR 76 147 -115 252 198 132 28 chr1 265414523 265414629 -16779035 - L1ME4a LINE L1 -31 6090 5974 512 217 198 13 chr1 265414774 265414931 -16778733 + MER5A DNA MER1_type 4 189 0 1918 141 29 0 chr1 265414995 265415271 -16778393 + AluJo SINE Alu 13 296 -16 234 294 116 33 chr1 265415434 265415709 -16777955 - L1ME LINE L1 -559 5562 5265 190 215 63 38 chr1 265417046 265417125 -16776539 - L2 LINE L2 -543 2771 2691 2597 60 0 0 chr1 265417354 265417653 -16776011 - AluY SINE Alu -12 299 1 2348 88 3 10 chr1 265418103 265418410 -16775254 - AluSq SINE Alu -8 305 1 353 217 61 26 chr1 265418868 265418983 -16774681 - MIR3 SINE MIR -45 163 45 405 283 24 44 chr1 265419243 265419448 -16774216 + MER90 LTR ERV1 396 596 -18 2035 148 20 0 chr1 265419681 265419979 -16773685 - AluSx SINE Alu -8 304 1 240 306 0 0 chr1 265421873 265421945 -16771719 + GA-rich Low_complexity Low_complexity 2 73 0 317 265 0 39 chr1 265421963 265422144 -16771520 + G-rich Low_complexity Low_complexity 1 174 0 366 279 9 27 chr1 265422145 265422256 -16771408 + GA-rich Low_complexity Low_complexity 5 113 0 2422 48 41 0 chr1 265422497 265422789 -16770875 + AluY SINE Alu 1 304 -7 359 259 0 88 chr1 265423506 265423699 -16769965 + C-rich Low_complexity Low_complexity 4 179 0 383 265 15 31 chr1 265423722 265423990 -16769674 + CT-rich Low_complexity Low_complexity 1 263 0 311 245 7 39 chr1 265423996 265424433 -16769231 + C-rich Low_complexity Low_complexity 1 422 0 200 301 0 24 chr1 265424438 265424521 -16769143 + CT-rich Low_complexity Low_complexity 1 81 0 * 500 273 5 41 chr1 265424479 265424873 -16768791 + C-rich Low_complexity Low_complexity 1 379 0 383 263 29 40 chr1 265424917 265425092 -16768572 + CT-rich Low_complexity Low_complexity 4 176 0 330 328 22 22 chr1 265425235 265425415 -16768249 + C-rich Low_complexity Low_complexity 1 180 0 2197 148 38 0 chr1 265427140 265427513 -16766151 - MLT1B LTR MaLR -3 387 1 567 232 51 11 chr1 265428060 265428237 -16765427 + MER53 DNA DNA 6 189 0 804 280 94 52 chr1 265428764 265429491 -16764173 + L2 LINE L2 2491 3298 -15 926 181 38 0 chr1 265429640 265429800 -16763864 + FAM SINE Alu 1 166 -9 197 295 51 26 chr1 265429809 265429887 -16763777 - MIR SINE MIR -73 189 110 1412 141 0 175 chr1 265431374 265431729 -16761935 - AluJo SINE Alu -9 293 1 22 0 0 0 chr1 265432845 265432867 -16760797 + AT_rich Low_complexity Low_complexity 1 22 0 542 155 10 29 chr1 265433169 265433272 -16760392 + FLAM_A SINE Alu 30 130 -12 1366 209 40 30 chr1 265433274 265433571 -16760093 + AluJo SINE Alu 1 300 -12 180 0 0 0 chr1 265433571 265433591 -16760073 + (TA)n Simple_repeat Simple_repeat 2 21 0 2037 109 31 7 chr1 265433591 265433884 -16759780 + AluSp SINE Alu 1 300 -13 21 0 0 0 chr1 265433919 265433940 -16759724 + AT_rich Low_complexity Low_complexity 1 21 0 1663 83 0 14 chr1 265433952 265434168 -16759496 + AluY SINE Alu 99 311 0 2294 128 94 25 chr1 265434177 265434583 -16759081 + Tigger2a DNA MER2_type 1 434 0 2643 58 0 13 chr1 265434968 265435280 -16758384 + AluY SINE Alu 1 308 -3 2137 114 10 7 chr1 265435787 265436076 -16757588 - AluSq SINE Alu -23 290 1 202 91 45 23 chr1 265437270 265437314 -16756350 + (TATG)n Simple_repeat Simple_repeat 3 47 0 4003 168 65 8 chr1 265437507 265438750 -16754914 + L1MB8 LINE L1 4843 6184 0 578 294 114 40 chr1 265438751 265439225 -16754439 + L1M4c LINE L1 2225 2738 -3644 463 290 89 34 chr1 265439320 265439840 -16753824 + L1M4c LINE L1 2912 3475 -2907 209 254 0 42 chr1 265439885 265439933 -16753731 + G-rich Low_complexity Low_complexity 1 47 -21 1748 154 7 43 chr1 265439933 265440232 -16753432 + AluJo SINE Alu 1 288 -24 209 254 0 42 chr1 265440232 265440254 -16753410 + G-rich Low_complexity Low_complexity 47 68 0 432 270 97 49 chr1 265440264 265440449 -16753215 + L1M4c LINE L1 3495 3688 -2694 267 295 66 62 chr1 265440539 265440844 -16752820 + L1M4c LINE L1 3862 4167 -2215 674 167 18 0 chr1 265441143 265441257 -16752407 - Tigger2a DNA MER2_type 0 434 319 * 1104 121 70 56 chr1 265441253 265441329 -16752335 - Tigger2a DNA MER2_type -2490 218 145 2568 73 0 0 chr1 265441329 265441629 -16752035 - AluY SINE Alu -11 300 1 1104 121 70 56 chr1 265441629 265441671 -16751993 - Tigger2a DNA MER2_type -2563 145 105 195 42 0 0 chr1 265441671 265441695 -16751969 + (GGA)n Simple_repeat Simple_repeat 2 25 0 1104 121 70 56 chr1 265441695 265441790 -16751874 - Tigger2a DNA MER2_type -2603 105 1 886 147 129 6 chr1 265441927 265442097 -16751567 - MER6B DNA MER2_type -19 191 1 975 152 25 13 chr1 265442291 265442449 -16751215 + AluJb SINE Alu 129 288 -24 441 272 80 8 chr1 265442741 265442866 -16750798 + L2 LINE L2 3179 3312 -1 1773 155 3 33 chr1 265443925 265444229 -16749435 + AluJo SINE Alu 1 295 -17 562 272 54 0 chr1 265444851 265444998 -16748666 + MIR SINE MIR 103 257 -5 483 333 63 48 chr1 265445536 265445950 -16747714 - L2 LINE L2 -352 2962 2543 343 298 53 9 chr1 265446504 265446618 -16747046 + L2 LINE L2 2933 3051 -221 300 108 151 40 chr1 265446785 265446875 -16746789 + L1ME3 LINE L1 5493 5598 -567 1081 128 11 21 chr1 265446876 265447064 -16746600 + MER20 DNA MER1_type 2 187 -32 528 220 52 78 chr1 265447075 265447441 -16746223 + L1ME3 LINE L1 5588 6041 -129 1249 185 82 62 chr1 265447441 265447733 -16745931 - AluJo SINE Alu -2 300 3 528 220 52 78 chr1 265447733 265447840 -16745824 + L1ME3 LINE L1 6041 6149 -21 4171 121 14 8 chr1 265447877 265448515 -16745149 + L1PA16 LINE L1 5522 6163 -3 226 284 128 69 chr1 265448613 265448785 -16744879 + L1ME4a LINE L1 5514 5674 -447 2230 125 0 0 chr1 265448785 265449089 -16744575 + AluSq SINE Alu 1 304 -9 226 284 128 69 chr1 265449089 265449251 -16744413 + L1ME4a LINE L1 5674 5868 -253 395 165 107 58 chr1 265449319 265449374 -16744290 + L1ME4a LINE L1 5994 6045 -76 2019 133 38 46 chr1 265449374 265449741 -16743923 + THE1B LTR MaLR 1 364 0 395 165 107 58 chr1 265449741 265449806 -16743858 + L1ME4a LINE L1 6045 6120 -1 718 185 8 0 chr1 265449844 265449963 -16743701 + FLAM_A SINE Alu 5 124 -9 254 81 0 0 chr1 265450129 265450166 -16743498 - tRNA-Gly-GGA tRNA tRNA -38 37 1 237 229 82 0 chr1 265450184 265450245 -16743419 + L1ME1 LINE L1 6048 6113 -53 245 278 11 11 chr1 265451997 265452087 -16741577 + (CATATA)n Simple_repeat Simple_repeat 2 91 0 26 64 0 0 chr1 265454629 265454676 -16738988 + GC_rich Low_complexity Low_complexity 1 47 0 226 227 13 13 chr1 265454828 265454903 -16738761 + C-rich Low_complexity Low_complexity 6 80 0 200 197 13 40 chr1 265454937 265455013 -16738651 + (CCGCG)n Simple_repeat Simple_repeat 1 74 0 22 80 0 0 chr1 265455061 265455111 -16738553 + GC_rich Low_complexity Low_complexity 1 50 0 306 125 0 0 chr1 265455164 265455212 -16738452 + (CCG)n Simple_repeat Simple_repeat 3 50 0 33 73 0 0 chr1 265455374 265455442 -16738222 + GC_rich Low_complexity Low_complexity 1 68 0 40 21 0 0 chr1 265457577 265457624 -16736040 + AT_rich Low_complexity Low_complexity 1 47 0 1040 260 37 11 chr1 265457748 265458125 -16735539 - HsTC2a DNA Tc2 0 744 358 403 302 169 0 chr1 265458162 265458351 -16735313 - L2 LINE L2 -380 2934 2714 275 0 29 0 chr1 265458360 265458395 -16735269 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 487 302 83 32 chr1 265458404 265458656 -16735008 - HsTC2a DNA Tc2 -479 265 1 2723 287 138 34 chr1 265459226 265460280 -16733384 - L2 LINE L2 0 3313 2371 2147 104 11 0 chr1 265460280 265460583 -16733081 - AluSx SINE Alu 0 307 2 2723 287 138 34 chr1 265460583 265461298 -16732366 - L2 LINE L2 -942 2371 1349 516 191 21 175 chr1 265461309 265461397 -16732267 + MER5B DNA MER1_type 15 58 -120 2188 119 0 0 chr1 265461397 265461682 -16731982 - AluSx SINE Alu -22 290 6 516 191 21 175 chr1 265461682 265461787 -16731877 + MER5B DNA MER1_type 58 178 0 549 314 171 25 chr1 265461788 265462127 -16731537 - L2 LINE L2 -1963 1351 956 1742 164 0 60 chr1 265462127 265462444 -16731220 + AluJb SINE Alu 5 302 -10 549 314 171 25 chr1 265462444 265462461 -16731203 - L2 LINE L2 -2358 956 943 2114 88 40 0 chr1 265463081 265463285 -16730379 - AluSx SINE Alu 0 338 117 342 45 0 0 chr1 265463285 265463329 -16730335 + (TG)n Simple_repeat Simple_repeat 2 45 0 2114 88 40 0 chr1 265463329 265463451 -16730213 - AluSx SINE Alu -221 117 1 731 212 0 0 chr1 265463536 265463668 -16729996 + AluJo SINE Alu 2 133 -169 566 337 31 5 chr1 265463677 265463873 -16729791 - MIR SINE MIR -14 248 48 734 241 6 12 chr1 265463875 265464045 -16729619 + AluJo SINE Alu 139 307 -5 311 304 0 0 chr1 265465005 265465084 -16728580 + MIR SINE MIR 69 147 -115 415 197 118 0 chr1 265465111 265465187 -16728477 + AluJ/FLAM SINE Alu 2 86 -226 867 165 0 0 chr1 265465217 265465350 -16728314 + FRAM SINE Alu 35 167 -9 221 214 29 0 chr1 265465423 265465493 -16728171 + (TA)n Simple_repeat Simple_repeat 2 73 0 2180 125 0 6 chr1 265465921 265466232 -16727432 + AluSx SINE Alu 1 309 -3 1884 173 52 28 chr1 265466352 265466774 -16726890 - MLT1D LTR MaLR -73 432 1 677 194 8 16 chr1 265467094 265467223 -16726441 - FLAM_A SINE Alu -5 128 1 3968 215 60 12 chr1 265467592 265468584 -16725080 + MER45B DNA AcHobo 1 1040 0 1876 163 7 100 chr1 265468754 265468890 -16724774 - MLT1B LTR MaLR -1 389 242 1301 66 0 11 chr1 265468890 265469072 -16724592 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1876 163 7 100 chr1 265469072 265469089 -16724575 - MLT1B LTR MaLR -148 242 225 2219 112 10 0 chr1 265469089 265469394 -16724270 - AluSx SINE Alu -4 308 1 1876 163 7 100 chr1 265469394 265469668 -16723996 - MLT1B LTR MaLR -165 225 1 329 358 53 11 chr1 265470489 265470679 -16722985 - MIR SINE MIR -63 199 2 286 219 8 32 chr1 265471006 265471129 -16722535 - Charlie7 DNA MER1_type -65 2547 2428 901 223 87 45 chr1 265471853 265472185 -16721479 - MLT1A1 LTR MaLR -19 346 1 186 147 0 29 chr1 265472266 265472300 -16721364 - MIR SINE MIR -9 253 221 292 295 0 0 chr1 265472346 265472407 -16721257 + MER91A DNA MER1_type 4 64 -132 552 176 0 9 chr1 265473867 265473975 -16719689 + L1MA8 LINE L1 3852 3958 -2188 4211 163 12 46 chr1 265473987 265475534 -16718130 + L1MA8 LINE L1 4446 5943 -348 2095 126 0 0 chr1 265475900 265476185 -16717479 - AluSx SINE Alu -26 286 2 2398 227 208 59 chr1 265476236 265476750 -16716914 - L1MC4 LINE L1 -143 7899 7463 862 155 62 12 chr1 265476750 265476911 -16716753 - FAM SINE Alu -3 172 4 2398 227 208 59 chr1 265476911 265477117 -16716547 - L1MC4 LINE L1 -579 7463 7289 2308 92 0 3 chr1 265477117 265477420 -16716244 - AluSp SINE Alu -11 302 1 2398 227 208 59 chr1 265477420 265477952 -16715712 - L1MC4 LINE L1 -753 7289 6459 183 234 37 131 chr1 265479241 265479348 -16714316 - L3 LINE CR1 -406 1171 1075 204 267 0 0 chr1 265479624 265479669 -16713995 + MER91A DNA MER1_type 132 176 -14 1990 87 32 26 chr1 265479747 265479886 -16713778 + L1MA3 LINE L1 5995 6132 -173 2231 113 0 0 chr1 265479886 265480187 -16713477 + AluSg SINE Alu 1 301 -9 1990 87 32 26 chr1 265480187 265480356 -16713308 + L1MA3 LINE L1 6132 6305 0 1686 159 28 38 chr1 265480371 265480661 -16713003 + AluJo SINE Alu 1 287 -25 34 0 0 0 chr1 265480662 265480696 -16712968 + AT_rich Low_complexity Low_complexity 1 34 0 2112 131 0 7 chr1 265480696 265480994 -16712670 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr1 265481034 265481054 -16712610 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1210 142 69 30 chr1 265481368 265481601 -16712063 - LTR47A LTR ERVL 0 452 211 1458 111 50 4 chr1 265481921 265482347 -16711317 - LTR54 LTR ERV1 0 510 5 2603 161 83 82 chr1 265482539 265482885 -16710779 + MER67C LTR ERV1 1 345 -365 2069 128 19 19 chr1 265482885 265483197 -16710467 - AluJb SINE Alu 0 312 1 2603 161 83 82 chr1 265483197 265483559 -16710105 + MER67C LTR ERV1 345 710 0 215 179 36 36 chr1 265483566 265483622 -16710042 + MIR3 SINE MIR 153 208 0 578 253 71 0 chr1 265484112 265484282 -16709382 - MIR SINE MIR 0 262 81 2034 95 78 3 chr1 265484712 265484995 -16708669 - AluSc SINE Alu -5 304 1 2064 146 70 52 chr1 265485104 265485544 -16708120 + MER83 LTR ERV1 1 448 0 419 303 21 21 chr1 265486245 265486387 -16707277 - MIR SINE MIR -4 258 117 1957 115 62 0 chr1 265486420 265486708 -16706956 + AluSg SINE Alu 1 306 -4 2435 87 0 0 chr1 265486787 265487087 -16706577 - AluSg SINE Alu -10 300 1 1504 218 34 23 chr1 265487101 265487541 -16706123 - L1ME2 LINE L1 -1 6163 5719 778 208 29 126 chr1 265487558 265488034 -16705630 + MER4C LTR ERV1 36 465 0 630 228 36 0 chr1 265488034 265488201 -16705463 - L1ME2 LINE L1 -441 5723 5551 592 238 61 42 chr1 265488217 265488431 -16705233 - L2 LINE L2 -6 3307 3090 183 156 0 0 chr1 265488470 265488502 -16705162 + A-rich Low_complexity Low_complexity 1 32 0 207 283 75 0 chr1 265488535 265488588 -16705076 - L2 LINE L2 -1385 1929 1873 619 279 79 26 chr1 265488675 265488904 -16704760 + MIR SINE MIR 22 262 0 3553 202 38 30 chr1 265490106 265490964 -16702700 + L1MC2 LINE L1 4391 5247 -946 1827 176 0 3 chr1 265490964 265491260 -16702404 + AluSx SINE Alu 12 306 -6 3553 202 38 30 chr1 265491260 265491466 -16702198 + L1MC2 LINE L1 5247 5450 -743 1786 238 93 70 chr1 265491467 265492169 -16701495 + MER21B LTR ERV1 1 718 -145 1511 123 13 4 chr1 265492247 265492483 -16701181 + L1MC2 LINE L1 5447 5684 -660 1064 192 12 31 chr1 265492483 265492694 -16700970 + L1MC2 LINE L1 6095 6309 -35 1536 177 74 52 chr1 265492694 265493151 -16700513 - MLT1C LTR MaLR 0 467 1 1064 192 12 31 chr1 265493151 265493187 -16700477 + L1MC2 LINE L1 6309 6344 0 347 261 19 68 chr1 265493994 265494155 -16699509 + MLT1J LTR MaLR 238 390 -121 1404 201 126 94 chr1 265494173 265494996 -16698668 - L1MC5 LINE L1 -476 7485 6636 2457 59 0 0 chr1 265495204 265495508 -16698156 - AluY SINE Alu -7 304 1 693 237 97 79 chr1 265495759 265495966 -16697698 - L1MC4a LINE L1 -1755 6036 5834 2131 135 0 7 chr1 265495966 265496269 -16697395 - AluSx SINE Alu -11 301 1 374 0 22 0 chr1 265496279 265496325 -16697339 + (TG)n Simple_repeat Simple_repeat 2 48 0 1767 95 123 8 chr1 265496325 265496578 -16697086 - AluSg SINE Alu -28 282 1 693 237 97 79 chr1 265496578 265496813 -16696851 - L1MC4a LINE L1 -1964 5827 5574 328 267 73 15 chr1 265496850 265497056 -16696608 - L1MC4a LINE L1 -1827 4302 4085 1286 280 78 26 chr1 265497209 265497866 -16695798 - L1MC4a LINE L1 -2021 4108 3418 2618 45 3 3 chr1 265497891 265498202 -16695462 + AluY SINE Alu 1 311 0 758 120 40 7 chr1 265498318 265498468 -16695196 + CT-rich Low_complexity Low_complexity 3 157 0 654 248 80 75 chr1 265498469 265498636 -16695028 - L1MC4a LINE L1 -2876 3253 3088 2104 190 39 7 chr1 265498636 265499073 -16694591 - L1PB4 LINE L1 -7 6149 5699 654 248 80 75 chr1 265499073 265499305 -16694359 - L1MC4a LINE L1 -3041 3088 2852 248 114 0 0 chr1 265499313 265499357 -16694307 + L1MA8 LINE L1 6231 6274 -17 30164 108 11 54 chr1 265499587 265506003 -16687661 - L1PA7 LINE L1 -7 6147 12 252 295 130 32 chr1 265506104 265506541 -16687123 - L1MC4a LINE L1 -3525 2604 2125 316 267 0 38 chr1 265506742 265506847 -16686817 - L1MC/D LINE L1 -2012 5796 5696 457 300 55 38 chr1 265507169 265507516 -16686148 - L1MC4a LINE L1 -4870 1249 897 294 334 53 44 chr1 265507734 265508072 -16685592 - L1MC4a LINE L1 -5494 625 285 24 32 0 0 chr1 265509178 265509209 -16684455 + AT_rich Low_complexity Low_complexity 1 31 0 323 316 89 36 chr1 265509466 265509634 -16684030 + MIR SINE MIR 6 182 -80 1636 209 0 3 chr1 265509826 265510134 -16683530 - AluJo SINE Alu 0 307 1 1908 144 0 4 chr1 265511371 265511649 -16682015 + AluJb SINE Alu 5 281 -31 2090 170 43 48 chr1 265511660 265512177 -16681487 + L1MC2 LINE L1 5320 5833 -511 865 168 0 6 chr1 265512184 265512357 -16681307 + L1MC3 LINE L1 7515 7686 -99 227 234 91 0 chr1 265512358 265512435 -16681229 + MER39 LTR ERV1 1 84 -623 2901 193 86 83 chr1 265512490 265513075 -16680589 - MER21A LTR ERV1 -6 925 336 2348 92 7 0 chr1 265513075 265513381 -16680283 + AluSx SINE Alu 1 308 -4 2901 193 86 83 chr1 265513381 265513706 -16679958 - MER21A LTR ERV1 -595 336 13 896 227 102 55 chr1 265513736 265514120 -16679544 + MER39 LTR ERV1 306 707 0 383 178 131 19 chr1 265514120 265514227 -16679437 + L1MC2 LINE L1 6226 6344 0 202 111 0 37 chr1 265514318 265514372 -16679292 + (TTTA)n Simple_repeat Simple_repeat 4 55 0 336 243 5 119 chr1 265514528 265514713 -16678951 + MER31-int LTR ERV1 3732 3895 -1041 256 236 79 0 chr1 265514921 265515010 -16678654 + MER31-int LTR ERV1 4106 4201 -735 703 190 16 0 chr1 265515202 265515323 -16678341 - FLAM_A SINE Alu -9 124 2 954 251 4 7 chr1 265515324 265515603 -16678061 + LTR37A LTR ERV1 129 406 -20 2038 93 0 11 chr1 265516007 265516276 -16677388 + AluSx SINE Alu 37 302 -10 491 270 112 13 chr1 265517124 265517276 -16676388 + MIR3 SINE MIR 16 182 -26 392 241 39 93 chr1 265517660 265517917 -16675747 - L1MB1 LINE L1 -4 6185 5943 2177 161 27 52 chr1 265517687 265518172 -16675492 - L1MB3 LINE L1 -7 6176 5704 2147 128 93 18 chr1 265518172 265518570 -16675094 + MSTA LTR MaLR 1 428 0 463 329 69 32 chr1 265520128 265520624 -16673040 + L2 LINE L2 2544 3069 -203 26 0 0 0 chr1 265520688 265520714 -16672950 + AT_rich Low_complexity Low_complexity 1 26 0 419 291 9 0 chr1 265520796 265520906 -16672758 - L2 LINE L2 -2 3311 3201 2573 227 135 30 chr1 265521963 265522487 -16671177 + L1ME2 LINE L1 4403 4871 -1293 405 54 0 0 chr1 265522487 265522543 -16671121 + (CA)n Simple_repeat Simple_repeat 1 56 0 2573 227 135 30 chr1 265522543 265523593 -16670071 + L1ME2 LINE L1 4871 6148 -16 702 158 17 23 chr1 265523597 265523774 -16669890 + GA-rich Low_complexity Low_complexity 3 178 0 575 242 86 55 chr1 265524689 265525088 -16668576 - LTR45B LTR ERV1 0 593 203 2099 121 3 32 chr1 265526788 265527103 -16666561 + AluSx SINE Alu 1 306 -6 207 100 0 0 chr1 265527231 265527261 -16666403 + (CCA)n Simple_repeat Simple_repeat 1 30 0 1190 175 24 82 chr1 265528735 265529027 -16664637 - L1MB8 LINE L1 -51 6127 5853 2655 133 16 63 chr1 265529266 265529776 -16663888 - LTR19A LTR ERV1 0 486 1 384 255 0 10 chr1 265529884 265529982 -16663682 - MIR3 SINE MIR -6 202 106 332 254 45 18 chr1 265530155 265530287 -16663377 + MLT1G LTR MaLR 1 127 -428 * 923 252 96 16 chr1 265530274 265530482 -16663182 + MLT1G LTR MaLR 253 496 -94 3300 122 138 0 chr1 265530482 265531040 -16662624 - LTR24C LTR ERV1 0 635 1 923 252 96 16 chr1 265531040 265531144 -16662520 + MLT1G LTR MaLR 496 590 0 281 258 21 31 chr1 265531368 265531465 -16662199 - MIR SINE MIR -121 141 46 1175 134 51 23 chr1 265531605 265531822 -16661842 - L1PA16 LINE L1 0 6166 5944 2615 107 24 3 chr1 265532009 265532391 -16661273 + MLT1B LTR MaLR 1 390 0 543 141 0 12 chr1 265532407 265532492 -16661172 + AluJ/FLAM SINE Alu 1 84 -228 2971 165 32 45 chr1 265533471 265533826 -16659838 - LTR39 LTR ERV1 0 783 436 1842 156 7 30 chr1 265533826 265534128 -16659536 + AluJo SINE Alu 3 297 -15 2971 165 32 45 chr1 265534128 265534329 -16659335 - LTR39 LTR ERV1 -347 436 234 209 267 44 33 chr1 265534885 265534975 -16658689 + MIR SINE MIR 102 192 -70 1983 125 0 14 chr1 265535018 265535333 -16658331 + AluJb SINE Alu 1 311 0 2094 190 126 12 chr1 265536551 265537051 -16656613 - MER74A LTR ERVL -1 557 1 295 267 9 38 chr1 265537471 265537576 -16656088 - MIR3 SINE MIR 0 208 107 822 167 61 16 chr1 265537584 265537772 -16655892 - MER4D LTR ERV1 0 903 544 1859 147 14 17 chr1 265537772 265538065 -16655599 + AluSx SINE Alu 1 292 -20 1450 236 163 78 chr1 265538242 265538359 -16655305 - MER21B LTR ERV1 -109 754 648 1595 149 159 48 chr1 265538359 265538774 -16654890 - LOR1b LTR ERV1 0 461 1 1450 236 163 78 chr1 265538774 265539351 -16654313 - MER21B LTR ERV1 -215 648 1 243 0 0 0 chr1 265539435 265539462 -16654202 + (TTG)n Simple_repeat Simple_repeat 3 29 0 4205 149 9 9 chr1 265539477 265540141 -16653523 - LTR51 LTR ERV1 0 671 8 281 243 32 95 chr1 265540147 265540336 -16653328 + L1ME4a LINE L1 5935 6111 -10 3653 213 22 30 chr1 265540363 265540530 -16653134 - L1MA10 LINE L1 -1 6333 6166 195 42 0 0 chr1 265540530 265540554 -16653110 + (TTA)n Simple_repeat Simple_repeat 2 25 0 3653 213 22 30 chr1 265540554 265541048 -16652616 - L1MA10 LINE L1 -168 6166 5678 2142 119 3 3 chr1 265541048 265541342 -16652322 - AluSq SINE Alu -19 294 1 3653 213 22 30 chr1 265541342 265541538 -16652126 - L1MA10 LINE L1 -656 5678 5482 1848 165 26 12 chr1 265541539 265541884 -16651780 - L1PB4 LINE L1 -1 6155 5806 1897 118 171 47 chr1 265542282 265542354 -16651310 - MSTA LTR MaLR 0 428 366 2185 142 0 0 chr1 265542354 265542665 -16650999 + AluSx SINE Alu 1 311 -1 1897 118 171 47 chr1 265542665 265542973 -16650691 - MSTA LTR MaLR -62 366 1 261 259 86 0 chr1 265543100 265543181 -16650483 + MIR SINE MIR 161 248 -14 1859 245 90 25 chr1 265543194 265543307 -16650357 + L1ME3A LINE L1 5465 5569 -601 2497 136 81 0 chr1 265543307 265543703 -16649961 + MSTC LTR MaLR 1 428 0 1859 245 90 25 chr1 265543703 265544242 -16649422 + L1ME3A LINE L1 5569 6160 -10 855 161 77 0 chr1 265544375 265544530 -16649134 + AluJo SINE Alu 126 292 -20 423 277 31 22 chr1 265545551 265545745 -16647919 - L1ME3A LINE L1 -160 6004 5807 231 167 0 0 chr1 265545770 265545806 -16647858 + L1ME4a LINE L1 5990 6025 -96 951 104 35 7 chr1 265545807 265545951 -16647713 - L1MA4 LINE L1 -3 6297 6150 440 105 13 0 chr1 265546264 265546340 -16647324 + (TG)n Simple_repeat Simple_repeat 1 77 0 1963 173 49 3 chr1 265546340 265546709 -16646955 + MLT1B LTR MaLR 5 390 0 410 271 0 0 chr1 265547247 265547343 -16646321 - FLAM_A SINE Alu -46 96 1 2653 146 14 56 chr1 265547860 265547947 -16645717 + MER41B LTR ERV1 114 203 -283 2398 84 0 0 chr1 265547947 265548245 -16645419 + AluSc SINE Alu 1 298 -11 2653 146 14 56 chr1 265548245 265548694 -16644970 + MER41B LTR ERV1 203 474 -12 595 146 400 30 chr1 265548817 265548855 -16644809 + L1MC1 LINE L1 5472 5495 -838 3681 163 60 30 chr1 265548855 265549561 -16644103 + LTR8A LTR ERV1 1 727 0 595 146 400 30 chr1 265549561 265549687 -16643977 + L1MC1 LINE L1 5495 5697 -636 3101 103 18 11 chr1 265549688 265550134 -16643530 - MER4D LTR ERV1 -1 902 454 32102 99 7 40 chr1 265550137 265556684 -16636980 - L1PA7 LINE L1 -11 6458 4 2964 124 14 7 chr1 265556686 265557130 -16636534 - MER4D LTR ERV1 -425 447 1 864 162 27 0 chr1 265557131 265557279 -16636385 + L1MC1 LINE L1 5695 5846 -498 541 143 0 0 chr1 265557312 265557403 -16636261 + L1MC1 LINE L1 6243 6333 0 7347 136 10 8 chr1 265557540 265560634 -16633030 + L1PB1 LINE L1 1817 6151 0 442 291 5 95 chr1 265560715 265560818 -16632846 - MLT2E LTR ERVL -410 218 138 2444 100 0 0 chr1 265560818 265561127 -16632537 - AluY SINE Alu -2 309 1 442 291 5 95 chr1 265561127 265561212 -16632452 - MLT2E LTR ERVL -490 138 47 1426 223 76 0 chr1 265561253 265561554 -16632110 - HsTC2 DNA Tc2 -1556 342 19 2685 137 26 5 chr1 265561557 265561974 -16631690 + MSTB LTR MaLR 1 426 0 194 206 0 118 chr1 265561981 265562049 -16631615 - MIR SINE MIR -106 156 97 405 205 46 67 chr1 265562291 265562486 -16631178 + MER112 DNA MER1_type 2 192 -68 759 280 72 55 chr1 265563025 265563526 -16630138 + L1MEc LINE L1 790 1316 -5080 2514 68 0 0 chr1 265563526 265563821 -16629843 - AluY SINE Alu -16 295 1 759 280 72 55 chr1 265563821 265564269 -16629395 + L1MEc LINE L1 1316 1755 -4641 216 182 0 0 chr1 265564333 265564377 -16629287 + (TA)n Simple_repeat Simple_repeat 2 45 0 24 53 0 0 chr1 265564458 265564496 -16629168 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr1 265564551 265564572 -16629092 + AT_rich Low_complexity Low_complexity 1 21 0 229 243 0 27 chr1 265564644 265564718 -16628946 + L1MEc LINE L1 2199 2270 -3945 449 230 0 0 chr1 265564733 265564820 -16628844 - FRAM/FAM SINE Alu -92 84 1 335 294 224 0 chr1 265565886 265566029 -16627635 + MER91A DNA MER1_type 18 192 -4 2023 175 22 22 chr1 265566154 265566175 -16627489 - MLT1A1 LTR MaLR 0 365 345 4547 194 31 3 chr1 265566175 265567052 -16626612 - MER54A LTR ERVL 0 901 1 2023 175 22 22 chr1 265567052 265567395 -16626269 - MLT1A1 LTR MaLR -19 346 1 1725 124 26 26 chr1 265567664 265567937 -16625727 - AluJo SINE Alu -10 302 30 476 291 63 8 chr1 265568167 265568371 -16625293 + LTR16A LTR ERVL 245 456 -1 1854 292 41 38 chr1 265568378 265570117 -16623547 + ERVL LTR ERVL 3 1851 -3145 282 100 60 0 chr1 265570123 265570173 -16623491 - MLT2C2 LTR ERVL -3 517 465 25 75 0 0 chr1 265570179 265570232 -16623432 + AT_rich Low_complexity Low_complexity 1 53 0 292 154 0 19 chr1 265570235 265570287 -16623377 + MLT2B1 LTR ERVL 470 520 0 2047 158 41 14 chr1 265570342 265570708 -16622956 - MLT2C2 LTR ERVL -88 376 1 1203 341 63 22 chr1 265570881 265571512 -16622152 + ERVL LTR ERVL 2106 2762 -2892 907 311 48 11 chr1 265571503 265571548 -16622116 + ERVL LTR ERVL 2951 2993 -2771 * 1575 153 37 37 chr1 265571548 265571843 -16621821 + AluJo SINE Alu 1 295 -17 907 311 48 11 chr1 265571843 265572154 -16621510 + ERVL LTR ERVL 2993 3320 -2444 1526 182 99 153 chr1 265572175 265572255 -16621409 - LTR8A LTR ERV1 -9 718 635 1931 141 21 0 chr1 265572255 265572546 -16621118 + AluSx SINE Alu 1 297 -15 1526 182 99 153 chr1 265572546 265573224 -16620440 - LTR8A LTR ERV1 -92 635 1 839 307 75 25 chr1 265573225 265573756 -16619908 + ERVL LTR ERVL 3291 3848 -1637 540 283 90 0 chr1 265573917 265574094 -16619570 + ERVL LTR ERVL 4081 4276 -1212 428 339 16 36 chr1 265574557 265574808 -16618856 + ERVL LTR ERVL 5012 5257 -507 713 268 135 41 chr1 265575062 265575424 -16618240 + LTR16A LTR ERVL 56 444 -6 1048 149 7 0 chr1 265575531 265575685 -16617979 - AluJo/FRAM SINE Alu -23 289 135 1480 175 73 0 chr1 265575688 265575974 -16617690 - AluSx SINE Alu -4 308 2 278 261 14 0 chr1 265576185 265576254 -16617410 + MLT1K LTR MaLR 519 588 0 1510 154 57 0 chr1 265576418 265576698 -16616966 - L1MB3 LINE L1 -8 6175 5880 189 0 0 0 chr1 265576985 265577006 -16616658 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 341 111 0 0 chr1 265577006 265577051 -16616613 - LTR23 LTR ERV1 -73 364 320 216 0 0 0 chr1 265577171 265577195 -16616469 + (TAA)n Simple_repeat Simple_repeat 1 24 0 269 303 115 2 chr1 265577197 265577327 -16616337 + MIR SINE MIR 23 165 -66 181 363 98 10 chr1 265577387 265577489 -16616175 - MIR SINE MIR -129 133 23 3864 53 2 0 chr1 265579756 265580209 -16613455 - L1PA7 LINE L1 0 6154 5701 459 0 0 0 chr1 265580400 265580451 -16613213 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 557 121 33 33 chr1 265580454 265580545 -16613119 + FLAM_C SINE Alu 27 117 -26 349 227 40 0 chr1 265580573 265580648 -16613016 + MER21B LTR ERV1 13 90 -773 603 260 78 0 chr1 265581095 265581249 -16612415 - MIR SINE MIR -48 214 49 2573 181 30 8 chr1 265581284 265581813 -16611851 + L1MB7 LINE L1 5372 5912 -272 225 0 0 0 chr1 265581831 265581856 -16611808 + (GA)n Simple_repeat Simple_repeat 2 26 0 2022 171 55 20 chr1 265581856 265582260 -16611404 - MER65A LTR ERV1 -27 418 1 5280 237 55 15 chr1 265582261 265584174 -16609490 - MER65A-int LTR ERV1 -1 4870 2836 1023 91 8 0 chr1 265584176 265584308 -16609356 + AluSc SINE Alu 1 133 -176 2233 97 3 7 chr1 265584308 265584608 -16609056 + AluSc SINE Alu 1 299 -10 596 213 155 74 chr1 265584613 265584871 -16608793 - MER65A-int LTR ERV1 -1718 4613 4335 1742 194 97 45 chr1 265584879 265585415 -16608249 - MER65A-int LTR ERV1 -4252 619 56 2475 142 46 25 chr1 265585466 265585902 -16607762 - MER65A LTR ERV1 0 445 1 1431 181 8 8 chr1 265585903 265586162 -16607502 + L1MB7 LINE L1 5910 6168 -16 820 177 22 116 chr1 265586321 265586586 -16607078 + L1ME1 LINE L1 5847 6085 -81 462 18 0 0 chr1 265586586 265586641 -16607023 + (TG)n Simple_repeat Simple_repeat 2 56 0 820 177 22 116 chr1 265586641 265586677 -16606987 + L1ME1 LINE L1 6085 6123 -43 1195 202 10 0 chr1 265586679 265586887 -16606777 + MER2 DNA MER2_type 1 210 -135 22 0 0 0 chr1 265586898 265586920 -16606744 + AT_rich Low_complexity Low_complexity 1 22 0 339 188 31 0 chr1 265586920 265586984 -16606680 + MER2 DNA MER2_type 280 345 0 295 170 0 0 chr1 265586984 265587037 -16606627 + L1MA10 LINE L1 6282 6334 0 2317 153 11 0 chr1 265587166 265587531 -16606133 - MLT1B LTR MaLR 0 390 22 290 341 63 24 chr1 265588090 265588216 -16605448 - MIR SINE MIR -74 188 58 252 0 0 0 chr1 265588239 265588267 -16605397 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 818 196 0 0 chr1 265589026 265589159 -16604505 + FLAM_A SINE Alu 1 133 0 949 229 84 25 chr1 265589165 265589449 -16604215 + L1ME3 LINE L1 5815 6115 -47 417 234 129 8 chr1 265589580 265589704 -16603960 - MER103 DNA DNA -8 158 20 3356 174 22 17 chr1 265591275 265591861 -16601803 + MER77 LTR ERV1 1 589 -16 432 314 109 58 chr1 265592373 265592685 -16600979 + L2 LINE L2 2940 3267 -5 1957 133 32 48 chr1 265593018 265593368 -16600296 + L1MB3 LINE L1 5814 6159 -24 2188 121 87 3 chr1 265593368 265593714 -16599950 + THE1C LTR MaLR 1 375 0 1957 133 32 48 chr1 265593714 265593739 -16599925 + L1MB3 LINE L1 6159 6183 0 1776 191 5 5 chr1 265595139 265595506 -16598158 + L1 LINE L1 4929 5295 -851 300 286 0 0 chr1 265595506 265595583 -16598081 - L1MC4 LINE L1 -1352 6690 6614 261 145 0 0 chr1 265595587 265595649 -16598015 + (TA)n Simple_repeat Simple_repeat 2 63 0 305 315 0 0 chr1 265595650 265595739 -16597925 - L1MC4 LINE L1 -1340 6702 6614 5762 152 19 6 chr1 265595761 265596064 -16597600 + L1MA4 LINE L1 5313 5611 -689 5148 63 63 3 chr1 265596064 265596687 -16596977 - PABL_A LTR ERV1 0 660 1 5762 152 19 6 chr1 265596687 265597348 -16596316 + L1MA4 LINE L1 5611 6289 -11 375 179 64 0 chr1 265597938 265598016 -16595648 - L1MB3 LINE L1 0 6183 6101 574 176 0 0 chr1 265598018 265598109 -16595555 - MER47B DNA MER2_type -1 417 327 1925 139 7 4 chr1 265598109 265598390 -16595274 + AluJo SINE Alu 1 282 -30 224 222 14 0 chr1 265598394 265598466 -16595198 + (TA)n Simple_repeat Simple_repeat 1 73 0 2030 151 18 35 chr1 265598478 265598816 -16594848 - MER47B DNA MER2_type -83 335 4 4202 165 54 25 chr1 265598816 265600028 -16593636 - L1MB3 LINE L1 -83 6100 4856 772 263 92 40 chr1 265600808 265601188 -16592476 - L1ME LINE L1 -385 5785 5386 302 260 52 31 chr1 265601369 265601465 -16592199 - MER5B DNA MER1_type -79 99 2 257 355 81 11 chr1 265601629 265601815 -16591849 + L2 LINE L2 2719 2917 -397 1426 204 4 15 chr1 265601824 265602089 -16591575 - MER4D LTR ERV1 -87 816 555 1763 138 7 27 chr1 265602171 265602467 -16591197 - MER49 LTR ERV1 -633 290 1 192 344 16 0 chr1 265602468 265602532 -16591132 + L2 LINE L2 3208 3272 0 2326 115 0 0 chr1 265602638 265602950 -16590714 + AluSq SINE Alu 1 312 -1 399 149 65 26 chr1 265603771 265604116 -16589548 + (TG)n Simple_repeat Simple_repeat 1 358 0 379 252 106 33 chr1 265604401 265604552 -16589112 + MER5B DNA MER1_type 1 162 -16 380 234 241 21 chr1 265604674 265604819 -16588845 + MER5A DNA MER1_type 13 189 0 445 157 130 17 chr1 265604851 265604966 -16588698 - MER5B DNA MER1_type -50 128 1 3094 120 37 8 chr1 265605282 265605765 -16587899 + MER34 LTR ERV1 1 497 -45 219 36 0 0 chr1 265605767 265605795 -16587869 + (CAA)n Simple_repeat Simple_repeat 2 29 0 952 152 0 0 chr1 265606068 265606213 -16587451 + FRAM SINE Alu 2 146 -30 553 279 162 14 chr1 265606443 265606665 -16586999 + MIR SINE MIR 8 262 0 335 238 181 19 chr1 265606674 265606779 -16586885 - MIR SINE MIR -108 154 33 1131 124 0 0 chr1 265606864 265606882 -16586782 + (TCC)n Simple_repeat Simple_repeat 1 195 0 1131 124 0 0 chr1 265606882 265607059 -16586605 + (TCC)n Simple_repeat Simple_repeat 2 178 0 1458 206 33 0 chr1 265607210 265607511 -16586153 - AluJo SINE Alu -1 311 1 349 175 167 33 chr1 265607706 265607826 -16585838 + MLT1K LTR MaLR 445 580 -8 588 311 89 27 chr1 265607872 265608097 -16585567 - L3 LINE CR1 -934 643 405 3028 153 0 8 chr1 265608364 265608833 -16584831 + MER4C LTR ERV1 1 465 0 523 195 188 26 chr1 265608955 265609109 -16584555 + MER5A DNA MER1_type 9 187 -2 1633 80 16 24 chr1 265609460 265609653 -16584011 - L1MA3 LINE L1 -32 6273 6081 2198 125 0 3 chr1 265609653 265609956 -16583708 - AluSx SINE Alu -9 303 2 1633 80 16 24 chr1 265609956 265610011 -16583653 - L1MA3 LINE L1 -224 6081 6027 347 273 134 71 chr1 265610095 265610348 -16583316 - HAL1 LINE L1 -262 2245 1977 461 299 49 18 chr1 265610385 265610609 -16583055 - HAL1 LINE L1 -475 2032 1802 287 158 179 53 chr1 265610616 265610711 -16582953 - LTR41 LTR ERVL -6 767 661 586 249 81 5 chr1 265611158 265611343 -16582321 - LTR41 LTR ERVL -574 199 1 790 282 8 28 chr1 265611695 265611943 -16581721 - ERVL LTR ERVL -324 5440 5198 484 258 18 36 chr1 265612103 265612270 -16581394 - ERVL LTR ERVL -575 5189 5026 * 2128 250 30 16 chr1 265612257 265612821 -16580843 - ERVL LTR ERVL -2976 2788 2217 380 172 16 0 chr1 265612852 265612916 -16580748 - ERVL LTR ERVL -3666 2098 2034 2303 114 0 0 chr1 265612918 265613224 -16580440 - AluSx SINE Alu -6 306 1 2109 260 53 38 chr1 265613671 265614400 -16579264 + L1ME3A LINE L1 4886 5602 -568 2905 160 38 18 chr1 265614400 265614895 -16578769 + MLT1D LTR MaLR 1 505 0 2109 260 53 38 chr1 265614895 265615105 -16578559 + L1ME3A LINE L1 5602 5857 -313 2992 179 73 98 chr1 265615105 265615437 -16578227 + MER63C DNA MER1_type 1 340 -720 2123 95 51 0 chr1 265615437 265615732 -16577932 + AluSq SINE Alu 1 310 -3 2992 179 73 98 chr1 265615732 265616353 -16577311 + MER63C DNA MER1_type 340 930 0 2109 260 53 38 chr1 265616353 265616478 -16577186 + L1ME3A LINE L1 5857 5979 -191 305 165 0 139 chr1 265616626 265616705 -16576959 + MLT1H LTR MaLR 480 547 -2 570 257 43 37 chr1 265616723 265616929 -16576735 + L1ME3A LINE L1 5973 6170 0 539 295 62 62 chr1 265616924 265617536 -16576128 + L1ME4a LINE L1 5357 5963 -158 * 710 192 0 16 chr1 265617580 265617762 -16575902 + (TAGG)n Simple_repeat Simple_repeat 2 180 0 612 227 0 0 chr1 265617808 265617984 -16575680 + (TAGG)n Simple_repeat Simple_repeat 2 177 0 822 184 0 0 chr1 265618026 265618200 -16575464 + (TAGG)n Simple_repeat Simple_repeat 4 177 0 243 189 0 0 chr1 265618213 265618266 -16575398 + (TAGG)n Simple_repeat Simple_repeat 4 56 0 333 247 74 56 chr1 265618266 265618428 -16575236 + L1ME4a LINE L1 5951 6115 -6 375 182 232 0 chr1 265618458 265618557 -16575107 - MER46C DNA MER2_type -203 135 14 699 218 0 15 chr1 265619156 265619289 -16574375 - FLAM_A SINE Alu -2 131 1 2244 92 31 0 chr1 265620009 265620301 -16573363 - AluSp SINE Alu -12 301 1 748 154 0 0 chr1 265620401 265620518 -16573146 + FRAM SINE Alu 47 163 -13 22 0 0 0 chr1 265620889 265620911 -16572753 + AT_rich Low_complexity Low_complexity 1 22 0 2234 164 164 9 chr1 265621989 265622435 -16571229 - MLT2B1 LTR ERVL -2 518 4 525 296 111 15 chr1 265622551 265622898 -16570766 - LTR16A1 LTR ERVL -9 448 87 415 261 112 80 chr1 265623028 265623277 -16570387 + L1MC4a LINE L1 5638 5894 -1914 28 61 0 0 chr1 265623292 265623341 -16570323 + AT_rich Low_complexity Low_complexity 1 49 0 1281 122 0 2 chr1 265624243 265624506 -16569158 + AluSq SINE Alu 2 313 0 301 336 76 76 chr1 265624879 265625156 -16568508 + L2 LINE L2 2996 3272 0 798 165 0 8 chr1 265626165 265626292 -16567372 + FLAM_C SINE Alu 1 126 -7 321 301 102 16 chr1 265626411 265626597 -16567067 + MIR SINE MIR 23 224 -38 343 154 28 196 chr1 265626934 265627077 -16566587 - MLT2F LTR ERVL -2 661 543 269 266 124 40 chr1 265627126 265627303 -16566361 - L1MCa LINE L1 -4534 1595 1441 2266 203 140 46 chr1 265627342 265627993 -16565671 - MER21B LTR ERV1 -57 806 95 394 219 0 62 chr1 265628089 265628185 -16565479 - MER21B LTR ERV1 -773 90 1 192 77 0 0 chr1 265628221 265628247 -16565417 + (TG)n Simple_repeat Simple_repeat 1 26 0 260 331 60 18 chr1 265628247 265628413 -16565251 - HAL1 LINE L1 -936 1571 1399 890 301 74 38 chr1 265628429 265629091 -16564573 - L1MCa LINE L1 -4885 1234 549 2213 209 34 11 chr1 265629185 265629665 -16563999 + MER41B LTR ERV1 100 466 -12 5728 116 23 2 chr1 265629788 265630588 -16563076 - MER4D LTR ERV1 0 903 87 2707 93 60 21 chr1 265630588 265631019 -16562645 + LTR7 LTR ERV1 1 448 -2 22539 103 13 10 chr1 265631021 265634301 -16559363 + HERVH LTR ERV1 1 3290 -4423 3399 115 4 6 chr1 265634291 265634794 -16558870 + HERVH LTR ERV1 3492 3993 -3720 * 25173 67 3 6 chr1 265634796 265638032 -16555632 + HERVH LTR ERV1 4488 7713 0 2646 102 58 21 chr1 265638032 265638464 -16555200 + LTR7 LTR ERV1 1 448 -2 587 111 20 20 chr1 265638466 265638565 -16555099 - MER4D LTR ERV1 -804 99 1 322 308 95 45 chr1 265638566 265638923 -16554741 - L1MCa LINE L1 -5733 386 12 483 221 29 10 chr1 265640062 265640166 -16553498 + LTR25 LTR ERV1 248 353 -441 296 195 51 153 chr1 265640145 265640263 -16553401 + MER61E LTR ERV1 84 189 -380 * 846 195 145 10 chr1 265640340 265640540 -16553124 + MER61E LTR ERV1 339 565 -4 288 0 0 0 chr1 265641897 265641929 -16551735 + (TG)n Simple_repeat Simple_repeat 2 33 0 1710 202 120 40 chr1 265641957 265642456 -16551208 - MLT1F LTR MaLR -3 539 1 609 209 75 0 chr1 265642484 265642618 -16551046 + MER104 DNA Tc2 35 178 -2 189 0 0 0 chr1 265643452 265643473 -16550191 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 453 281 6 6 chr1 265643726 265643886 -16549778 + L1M4 LINE L1 4925 5084 -1062 2159 154 32 64 chr1 265644329 265644583 -16549081 - MSTD LTR MaLR 0 396 158 1828 182 73 5 chr1 265644583 265644952 -16548712 + MSTD LTR MaLR 1 394 -2 2159 154 32 64 chr1 265644952 265645106 -16548558 - MSTD LTR MaLR -238 158 1 453 244 23 30 chr1 265645778 265645909 -16547755 + LTR67 LTR ERVL 6 135 -422 2396 95 0 3 chr1 265646527 265646832 -16546832 + AluSx SINE Alu 1 304 -8 1195 270 232 8 chr1 265648268 265648750 -16544914 + MLT1G1 LTR MaLR 4 593 -2 955 176 32 5 chr1 265649256 265649444 -16544220 - MER4C LTR ERV1 0 465 273 1512 171 18 97 chr1 265649630 265650098 -16543566 - MER4A LTR ERV1 -186 349 3 1524 181 183 2 chr1 265650156 265650515 -16543149 - LTR54B LTR ERV1 -2 496 49 195 42 0 0 chr1 265650515 265650539 -16543125 + (GTCTG)n Simple_repeat Simple_repeat 1 24 0 1524 181 183 2 chr1 265650539 265650599 -16543065 - LTR54B LTR ERV1 -449 49 1 1553 260 166 0 chr1 265650646 265651111 -16542553 + MLT1F LTR MaLR 1 542 0 419 302 67 0 chr1 265651175 265651324 -16542340 + MIR SINE MIR 104 262 0 241 280 11 32 chr1 265651448 265651541 -16542123 + MER34 LTR ERV1 41 131 -411 231 277 113 0 chr1 265651685 265651844 -16541820 + LTR48 LTR ERV1 570 746 -41 832 159 75 4 chr1 265652873 265653080 -16540584 + MSTC LTR MaLR 1 303 -125 1584 101 0 21 chr1 265653084 265653321 -16540343 - L1MB3 LINE L1 -198 5985 5754 4188 91 24 36 chr1 265653321 265653935 -16539729 + LTR9 LTR ERV1 1 607 -5 396 164 48 0 chr1 265653940 265654017 -16539647 - L1MB3 LINE L1 -414 5757 5675 1418 179 27 37 chr1 265655826 265656040 -16537624 - AluJb SINE Alu 0 312 124 198 0 0 0 chr1 265656040 265656062 -16537602 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1418 179 27 37 chr1 265656062 265656185 -16537479 - AluJb SINE Alu -188 124 1 2147 125 3 3 chr1 265656284 265656589 -16537075 - AluSx SINE Alu -7 305 1 982 140 6 34 chr1 265656621 265656799 -16536865 + L1MC1 LINE L1 6161 6333 0 23 33 0 0 chr1 265656872 265656902 -16536762 + AT_rich Low_complexity Low_complexity 1 30 0 449 307 39 13 chr1 265657391 265657544 -16536120 + MER91A DNA MER1_type 22 178 -18 1505 159 27 47 chr1 265657993 265658289 -16535375 - AluJo SINE Alu -21 291 2 2827 190 51 2 chr1 265658486 265659018 -16534646 + MER74A LTR ERVL 1 558 0 316 339 70 35 chr1 265659018 265659248 -16534416 - L2 LINE L2 -225 3047 2810 239 364 31 20 chr1 265659417 265659612 -16534052 + MLT1K LTR MaLR 220 416 -172 210 316 10 114 chr1 265659866 265660059 -16533605 - L2 LINE L2 -567 2747 2575 2254 113 0 0 chr1 265660290 265660582 -16533082 + AluSx SINE Alu 1 292 -20 304 319 7 65 chr1 265660592 265660730 -16532934 - L2 LINE L2 -556 2758 2629 * 528 243 35 28 chr1 265660727 265660871 -16532793 - L2 LINE L2 -2 3311 3167 713 147 34 12 chr1 265660872 265661199 -16532465 + (TCTA)n Simple_repeat Simple_repeat 1 334 0 2543 260 54 27 chr1 265661199 265661725 -16531939 - L2 LINE L2 -163 3150 2592 1115 159 23 41 chr1 265661725 265661945 -16531719 - MER20 DNA MER1_type -3 216 1 2543 260 54 27 chr1 265661945 265662395 -16531269 - L2 LINE L2 -721 2592 2156 1307 261 43 46 chr1 265662448 265662843 -16530821 + MLT1E LTR MaLR 74 467 -126 481 258 134 64 chr1 265662856 265663139 -16530525 - L2 LINE L2 -1171 2143 1841 237 33 0 0 chr1 265663152 265663182 -16530482 + (CA)n Simple_repeat Simple_repeat 2 31 0 479 326 112 12 chr1 265663227 265663558 -16530106 - L2 LINE L2 -779 2535 2172 1029 166 91 0 chr1 265663590 265663777 -16529887 + MER20 DNA MER1_type 16 219 0 488 247 56 40 chr1 265663985 265664366 -16529298 - Charlie2a DNA MER1_type -11 2851 733 246 288 0 14 chr1 265664364 265664437 -16529227 - Charlie2a DNA MER1_type -2388 474 403 * 1269 166 143 62 chr1 265664465 265664819 -16528845 + LTR54B LTR ERV1 1 396 -102 2569 69 0 0 chr1 265664819 265665124 -16528540 - AluSx SINE Alu -7 305 1 1269 166 143 62 chr1 265665124 265665190 -16528474 + LTR54B LTR ERV1 396 455 -43 444 309 13 0 chr1 265665209 265665358 -16528306 - Charlie2a DNA MER1_type -2628 154 4 2296 104 3 19 chr1 265665458 265665814 -16527850 + AluSx SINE Alu 1 351 0 517 252 13 26 chr1 265665979 265666134 -16527530 + L2 LINE L2 3159 3311 -2 310 374 21 48 chr1 265666143 265666396 -16527268 - L2 LINE L2 -1824 1490 1247 1673 212 106 41 chr1 265666396 265667001 -16526663 + LTR48B LTR ERV1 1 644 0 310 374 21 48 chr1 265667001 265667081 -16526583 - L2 LINE L2 -2067 1247 1166 217 356 42 17 chr1 265667405 265667523 -16526141 + L2 LINE L2 3122 3242 -30 1355 202 58 55 chr1 265667599 265668014 -16525650 - LTR37A LTR ERV1 0 426 11 313 184 102 7 chr1 265669751 265669836 -16523828 + MIR SINE MIR 28 120 -88 244 245 126 81 chr1 265669849 265669987 -16523677 + L1MC5 LINE L1 7641 7771 -190 2201 121 3 0 chr1 265669987 265670275 -16523389 + AluSp SINE Alu 1 292 -21 276 30 0 0 chr1 265670275 265670308 -16523356 + (TA)n Simple_repeat Simple_repeat 1 33 0 2201 121 3 0 chr1 265670308 265670325 -16523339 + AluSp SINE Alu 292 307 -6 244 245 126 81 chr1 265670325 265670447 -16523217 + L1MC5 LINE L1 7771 7913 -48 1359 159 9 5 chr1 265674409 265674629 -16519035 + AluJb SINE Alu 90 310 -2 2587 122 112 2 chr1 265674905 265675341 -16518323 - MER1A DNA MER1_type 0 529 46 921 313 132 58 chr1 265675410 265676430 -16517234 + L2 LINE L2 1611 2706 -608 577 144 0 0 chr1 265676600 265676690 -16516974 + Tigger7 DNA MER2_type 2393 2482 -9 356 303 113 10 chr1 265676784 265676965 -16516699 + MIR3 SINE MIR 15 205 -3 978 141 63 48 chr1 265676978 265677184 -16516480 + MER2 DNA MER2_type 1 209 -136 28 0 0 0 chr1 265677195 265677223 -16516441 + AT_rich Low_complexity Low_complexity 1 28 0 382 167 142 92 chr1 265677296 265677416 -16516248 - MIR SINE MIR -58 150 25 603 274 183 20 chr1 265678730 265679036 -16514628 + L2 LINE L2 2911 3266 -47 4800 152 29 5 chr1 265679092 265680284 -16513380 - L1PB4 LINE L1 -3 6153 4934 4712 136 47 42 chr1 265681217 265682167 -16511497 - L1MC2 LINE L1 -9 6335 5381 1453 156 64 36 chr1 265682215 265682574 -16511090 - L1MA9 LINE L1 -5 6307 5939 2094 134 0 10 chr1 265682575 265682888 -16510776 - AluSx SINE Alu -2 310 1 1150 214 71 50 chr1 265683011 265683348 -16510316 - MSTD LTR MaLR -14 382 39 29125 102 20 9 chr1 265683353 265688180 -16505484 - L1P3 LINE L1 -861 5600 704 309 334 36 58 chr1 265688190 265688519 -16505145 + L1ME4a LINE L1 5783 6104 -17 26 30 0 0 chr1 265689189 265689222 -16504442 + AT_rich Low_complexity Low_complexity 1 33 0 218 250 0 0 chr1 265690969 265691017 -16502647 + L2 LINE L2 3207 3254 -18 308 24 24 0 chr1 265691388 265691429 -16502235 + (TCTCC)n Simple_repeat Simple_repeat 1 42 0 427 264 8 64 chr1 265691642 265691767 -16501897 + L2 LINE L2 3155 3272 0 30 83 0 0 chr1 265692716 265692788 -16500876 + AT_rich Low_complexity Low_complexity 1 72 0 425 297 17 8 chr1 265692931 265693049 -16500615 + L2 LINE L2 3193 3311 -2 1865 172 0 23 chr1 265693272 265693580 -16500084 + AluJb SINE Alu 1 301 -11 249 295 39 0 chr1 265694587 265694665 -16498999 + MIR SINE MIR 71 151 -111 272 274 44 44 chr1 265694886 265694999 -16498665 - MIR3 SINE MIR -8 200 88 411 311 104 55 chr1 265695188 265695676 -16497988 + L2 LINE L2 1966 2477 -837 204 323 42 52 chr1 265696339 265696435 -16497229 + L2 LINE L2 3005 3099 -173 21 0 0 0 chr1 265696964 265696985 -16496679 + AT_rich Low_complexity Low_complexity 1 21 0 230 313 12 12 chr1 265697583 265697666 -16495998 + GA-rich Low_complexity Low_complexity 4 86 0 195 283 33 0 chr1 265698914 265698974 -16494690 - L2 LINE L2 -6 3266 3205 207 376 0 21 chr1 265699354 265699447 -16494217 - L2 LINE L2 -225 3047 2957 1857 174 14 0 chr1 265699986 265700280 -16493384 - AluJb SINE Alu -14 298 1 190 229 62 0 chr1 265701160 265701208 -16492456 - MIR SINE MIR -93 169 119 260 333 156 26 chr1 265701451 265701835 -16491829 + L2 LINE L2 2544 2977 -337 890 124 8 0 chr1 265701916 265702045 -16491619 + FLAM_C SINE Alu 1 130 -3 22 0 0 0 chr1 265703268 265703290 -16490374 + AT_rich Low_complexity Low_complexity 1 22 0 662 228 94 0 chr1 265703527 265703676 -16489988 - MIR SINE MIR -7 255 93 208 261 0 0 chr1 265703879 265703925 -16489739 - MIR3 SINE MIR -9 199 154 36 23 0 0 chr1 265704971 265705014 -16488650 + AT_rich Low_complexity Low_complexity 1 43 0 1414 178 31 48 chr1 265705023 265705315 -16488349 - AluJo SINE Alu -25 287 1 308 266 45 94 chr1 265705501 265705745 -16487919 - L1MEd LINE L1 -3954 2175 1944 483 258 166 18 chr1 265706098 265706667 -16486997 - L1MEd LINE L1 -4712 1598 896 198 0 0 0 chr1 265707673 265707695 -16485969 + (ATG)n Simple_repeat Simple_repeat 1 22 0 216 303 148 31 chr1 265708018 265708180 -16485484 + MIR3 SINE MIR 21 201 -7 245 266 55 9 chr1 265711448 265711557 -16482107 - L1ME LINE L1 -305 5816 5703 244 219 0 16 chr1 265712700 265712764 -16480900 - MLT1J LTR MaLR -6 505 443 180 0 0 0 chr1 265712777 265712797 -16480867 + (A)n Simple_repeat Simple_repeat 1 20 0 2122 132 3 3 chr1 265713155 265713459 -16480205 - AluSx SINE Alu -8 304 1 232 325 219 0 chr1 265715392 265715543 -16478121 + MIR SINE MIR 2 185 -77 386 200 27 0 chr1 265718316 265718391 -16475273 - MER2 DNA MER2_type -1 344 268 689 211 8 0 chr1 265718418 265718546 -16475118 + FLAM_C SINE Alu 2 130 -13 26 0 0 0 chr1 265718547 265718573 -16475091 + AT_rich Low_complexity Low_complexity 1 26 0 497 95 0 0 chr1 265718573 265718647 -16475017 - MER2 DNA MER2_type -191 154 81 375 266 156 8 chr1 265718771 265718899 -16474765 - MIR SINE MIR -11 251 105 281 265 93 60 chr1 265718919 265719070 -16474594 + MER5A DNA MER1_type 4 159 -30 23 0 0 0 chr1 265720074 265720097 -16473567 + AT_rich Low_complexity Low_complexity 1 23 0 315 191 0 0 chr1 265720528 265720591 -16473073 + (TA)n Simple_repeat Simple_repeat 2 64 0 223 271 0 29 chr1 265721945 265722015 -16471649 + GA-rich Low_complexity Low_complexity 5 72 0 299 150 17 0 chr1 265722095 265722155 -16471509 + (TG)n Simple_repeat Simple_repeat 2 62 0 834 278 169 23 chr1 265724139 265724701 -16468963 - MLT2F LTR ERVL -19 644 1 313 240 270 0 chr1 265724854 265724954 -16468710 - MIR SINE MIR -109 153 27 2083 101 3 0 chr1 265725136 265725422 -16468242 + AluSx SINE Alu 18 304 -8 365 162 15 15 chr1 265725690 265725758 -16467906 - MLT1J1 LTR MaLR -141 305 238 1209 228 133 36 chr1 265725776 265726189 -16467475 - MLT1C LTR MaLR -9 458 6 1894 111 4 11 chr1 265727283 265727562 -16466102 + AluSq SINE Alu 1 277 -36 532 286 185 8 chr1 265727787 265728165 -16465499 + L1MEc LINE L1 270 714 -5682 5686 119 29 0 chr1 265728171 265729226 -16464438 - L1PA16 LINE L1 -16 6150 5084 3474 131 84 16 chr1 265729396 265730024 -16463640 + L1MC1 LINE L1 5663 6333 0 709 265 59 40 chr1 265730046 265730299 -16463365 - MER46C DNA MER2_type 0 338 81 351 0 0 0 chr1 265730516 265730555 -16463109 + (TG)n Simple_repeat Simple_repeat 2 40 0 338 237 41 21 chr1 265730855 265730952 -16462712 - MER5A DNA MER1_type -77 112 14 893 173 9 32 chr1 265734225 265734648 -16459016 + L1MB3 LINE L1 5664 6176 -7 1375 203 11 0 chr1 265735953 265736219 -16457445 - L1MC1 LINE L1 -2 6331 6063 203 347 58 33 chr1 265738520 265738641 -16455023 + L2 LINE L2 3146 3269 -3 1000 176 0 0 chr1 265738657 265738822 -16454842 + FRAM SINE Alu 1 165 -1 414 321 41 7 chr1 265738968 265739171 -16454493 + MIR SINE MIR 21 237 -25 2124 131 9 90 chr1 265740421 265740842 -16452822 + MLT1B LTR MaLR 4 390 0 258 281 62 0 chr1 265740924 265741020 -16452644 - MER5B DNA MER1_type -74 104 3 239 344 22 61 chr1 265741071 265741251 -16452413 - MER5B DNA MER1_type -5 173 1 222 337 41 10 chr1 265742661 265742759 -16450905 + L2 LINE L2 3136 3236 -36 389 325 0 0 chr1 265742806 265742926 -16450738 - MIR SINE MIR -141 121 2 311 302 27 81 chr1 265742975 265743124 -16450540 - MIR SINE MIR -50 212 72 574 154 0 0 chr1 265744907 265744998 -16448666 + FRAM SINE Alu 64 154 -22 27 0 0 0 chr1 265745003 265745030 -16448634 + AT_rich Low_complexity Low_complexity 1 27 0 249 288 0 0 chr1 265745079 265745145 -16448519 + MIR SINE MIR 44 109 -99 187 343 43 14 chr1 265745269 265745339 -16448325 - L2 LINE L2 -47 3266 3195 275 54 0 0 chr1 265745433 265745470 -16448194 + LTR24B LTR ERV1 1 37 -539 2657 84 14 22 chr1 265745935 265746294 -16447370 + THE1B LTR MaLR 1 356 -8 537 167 23 61 chr1 265746383 265746515 -16447149 + LTR5 LTR ERVK 1 127 -842 1047 195 0 63 chr1 265746973 265747100 -16446564 - MLT1C LTR MaLR 0 467 358 2097 108 3 0 chr1 265747100 265747396 -16446268 - AluY SINE Alu -14 297 1 1047 195 0 63 chr1 265747396 265747489 -16446175 - MLT1C LTR MaLR -109 358 261 610 101 18 46 chr1 265747489 265747598 -16446066 - L1M2 LINE L1 -799 5513 5408 685 242 6 0 chr1 265747600 265747757 -16445907 + L1MA9 LINE L1 5884 6041 -271 363 289 22 0 chr1 265747894 265747984 -16445680 + L1PA12 LINE L1 2082 2173 -5408 2204 104 3 3 chr1 265748128 265748436 -16445228 + AluSx SINE Alu 1 308 -4 4438 246 27 26 chr1 265748530 265750234 -16443430 + L1PA12 LINE L1 2182 3910 -3674 30 59 0 0 chr1 265750374 265750425 -16443239 + AT_rich Low_complexity Low_complexity 1 51 0 342 284 93 26 chr1 265750898 265751092 -16442572 - MLT1L LTR MaLR -35 580 374 1545 189 0 29 chr1 265751319 265751631 -16442033 - AluJo SINE Alu -9 303 1 426 283 47 32 chr1 265752047 265752306 -16441358 + MLT1J LTR MaLR 64 323 -123 1034 198 0 30 chr1 265753699 265753901 -16439763 - MLT1C LTR MaLR -303 202 7 186 133 0 0 chr1 265754725 265754755 -16438909 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 22 70 0 0 chr1 265755195 265755238 -16438426 + AT_rich Low_complexity Low_complexity 1 43 0 1568 113 13 4 chr1 265756106 265756345 -16437319 + AluSg/x SINE Alu 70 310 -2 224 122 24 0 chr1 265756345 265756386 -16437278 + GA-rich Low_complexity Low_complexity 1 42 0 813 110 8 0 chr1 265756391 265756518 -16437146 + L1MA4A LINE L1 6170 6297 -6 1821 160 52 62 chr1 265756798 265757167 -16436497 + MLT1A1 LTR MaLR 1 365 0 1258 115 10 10 chr1 265759319 265759511 -16434153 + AluSq SINE Alu 7 198 -115 342 67 0 0 chr1 265761306 265761351 -16432313 + (TG)n Simple_repeat Simple_repeat 2 46 0 680 330 105 6 chr1 265761406 265761757 -16431907 - LTR16B LTR ERVL -31 433 48 345 49 0 0 chr1 265761887 265761928 -16431736 + MSTD LTR MaLR 1 41 -355 430 198 0 0 chr1 265762028 265762114 -16431550 + L1MB3 LINE L1 6091 6176 -7 249 33 0 0 chr1 265762144 265762174 -16431490 + (TG)n Simple_repeat Simple_repeat 2 31 0 2368 68 0 16 chr1 265762248 265762556 -16431108 - AluY SINE Alu -8 303 1 26 64 0 0 chr1 265762956 265763003 -16430661 + AT_rich Low_complexity Low_complexity 1 47 0 325 251 145 22 chr1 265763311 265763490 -16430174 + LTR33 LTR ERVL 315 515 -6 243 0 0 0 chr1 265763708 265763735 -16429929 + (TG)n Simple_repeat Simple_repeat 2 28 0 2247 76 14 0 chr1 265763786 265764075 -16429589 + AluY SINE Alu 1 293 -18 1988 133 0 0 chr1 265764851 265765156 -16428508 - AluSq SINE Alu 0 305 1 2499 154 93 18 chr1 265765257 265765771 -16427893 - L1MB8 LINE L1 -1 6177 5625 189 171 0 0 chr1 265765915 265765950 -16427714 + A-rich Low_complexity Low_complexity 1 35 0 1803 223 99 9 chr1 265766604 265767026 -16426638 - MER82 DNA MER2_type 0 653 194 2009 112 0 43 chr1 265767059 265767362 -16426302 - AluSx SINE Alu -22 290 1 1978 120 7 0 chr1 265767383 265767667 -16425997 - AluSx SINE Alu -26 286 1 1178 216 84 17 chr1 265767668 265767965 -16425699 - MER31B LTR ERV1 -40 426 110 1842 219 44 38 chr1 265768570 265769072 -16424592 + MLT1D LTR MaLR 1 505 0 223 226 0 19 chr1 265769589 265769642 -16424022 + (TA)n Simple_repeat Simple_repeat 2 53 0 890 295 42 45 chr1 265769642 265770181 -16423483 + L1MEc LINE L1 1290 1931 -4632 1771 170 3 0 chr1 265770181 265770475 -16423189 + AluSx SINE Alu 1 295 -17 890 295 42 45 chr1 265770475 265770534 -16423130 + L1MEc LINE L1 1931 1989 -4574 1760 125 89 0 chr1 265770768 265771049 -16422615 - AluSx SINE Alu -6 306 1 1183 246 130 48 chr1 265771083 265771668 -16421996 + L1MEc LINE L1 2036 2693 -3689 1921 133 3 16 chr1 265771668 265771977 -16421687 + AluSx SINE Alu 1 305 -7 1183 246 130 48 chr1 265771977 265772355 -16421309 + L1MEc LINE L1 2693 3038 -3344 188 224 41 20 chr1 265774006 265774055 -16419609 + MER5A DNA MER1_type 27 76 -113 308 220 22 0 chr1 265774073 265774164 -16419500 + GA-rich Low_complexity Low_complexity 1 93 0 1043 76 29 6 chr1 265774168 265774339 -16419325 + (GAAA)n Simple_repeat Simple_repeat 1 175 0 215 31 31 0 chr1 265774505 265774537 -16419127 + (AGGGGG)n Simple_repeat Simple_repeat 3 35 0 249 33 0 0 chr1 265776491 265776521 -16417143 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 204 187 67 13 chr1 265776728 265776803 -16416861 + (CTGGGG)n Simple_repeat Simple_repeat 5 83 0 204 245 43 11 chr1 265776981 265777075 -16416589 + (TA)n Simple_repeat Simple_repeat 1 97 0 1630 160 0 34 chr1 265777176 265777470 -16416194 + AluJo SINE Alu 3 286 -26 592 246 168 16 chr1 265778379 265778570 -16415094 - MIR SINE MIR -34 228 9 198 0 0 0 chr1 265778957 265778979 -16414685 + (GA)n Simple_repeat Simple_repeat 1 22 0 288 196 56 9 chr1 265778984 265779205 -16414459 + (TAGA)n Simple_repeat Simple_repeat 1 231 0 542 185 0 0 chr1 265779209 265779301 -16414363 - MER8 DNA MER2_type 0 239 148 216 111 0 0 chr1 265779415 265779451 -16414213 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 1142 185 145 54 chr1 265779452 265779728 -16413936 - AluJo SINE Alu 0 302 2 5332 234 25 27 chr1 265779734 265781417 -16412247 - L1 LINE L1 -1667 4479 2799 2148 109 0 3 chr1 265781747 265782050 -16411614 - AluSp SINE Alu -10 303 2 2385 166 14 30 chr1 265782160 265782599 -16411065 + Tigger2a DNA MER2_type 3 434 0 212 254 48 16 chr1 265782669 265782732 -16410932 - L2 LINE L2 -25 3288 3224 695 214 0 0 chr1 265782751 265782867 -16410797 + FLAM_C SINE Alu 2 120 -192 231 36 0 0 chr1 265782867 265782895 -16410769 + (CAAA)n Simple_repeat Simple_repeat 4 31 0 373 302 64 73 chr1 265783095 265783152 -16410512 - L2 LINE L2 -351 2963 2907 2011 128 0 3 chr1 265783152 265783467 -16410197 - AluSx SINE Alu 0 314 1 373 302 64 73 chr1 265783467 265783752 -16409912 - L2 LINE L2 -407 2907 2623 2074 177 27 23 chr1 265783793 265784246 -16409418 - LTR56 LTR ERV1 0 437 9 1189 179 18 4 chr1 265784266 265784495 -16409169 - MER67C LTR ERV1 0 710 479 848 150 0 0 chr1 265784677 265784810 -16408854 + AluSq/x SINE Alu 1 133 -179 1128 159 0 0 chr1 265785045 265785234 -16408430 - AluSq SINE Alu -123 190 2 1530 111 27 0 chr1 265785235 265785553 -16408111 - L1P4 LINE L1 -676 5485 5161 1886 122 0 0 chr1 265786074 265786344 -16407320 + AluSx SINE Alu 39 308 -4 23 0 0 0 chr1 265786344 265786367 -16407297 + AT_rich Low_complexity Low_complexity 1 23 0 2178 107 0 0 chr1 265786390 265786690 -16406974 + AluSg SINE Alu 1 300 -10 423 0 0 0 chr1 265787145 265787192 -16406472 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1366 157 39 57 chr1 265787197 265787348 -16406316 - AluJo SINE Alu -37 275 130 1955 124 10 0 chr1 265787348 265787638 -16406026 + AluSx SINE Alu 1 293 -19 1366 157 39 57 chr1 265787638 265787766 -16405898 - AluJo SINE Alu -182 130 1 22 70 0 0 chr1 265789529 265789572 -16404092 + AT_rich Low_complexity Low_complexity 1 43 0 2010 124 3 6 chr1 265789574 265789888 -16403776 + AluSq SINE Alu 1 313 0 1657 237 39 5 chr1 265789929 265790363 -16403301 - L1MD3 LINE L1 0 7995 7547 587 266 40 50 chr1 265790469 265790747 -16402917 - L1ME LINE L1 -510 5660 5386 290 266 53 32 chr1 265790928 265791022 -16402642 - MER5B DNA MER1_type -79 99 4 270 355 75 5 chr1 265791188 265791374 -16402290 + L2 LINE L2 2719 2917 -397 1413 204 4 15 chr1 265791383 265791648 -16402016 - MER4D LTR ERV1 -87 816 555 1761 142 7 27 chr1 265791730 265792026 -16401638 - MER49 LTR ERV1 -633 290 1 197 344 16 0 chr1 265792027 265792091 -16401573 + L2 LINE L2 3208 3272 0 1923 121 50 0 chr1 265792197 265792495 -16401169 + AluSq SINE Alu 1 313 0 2141 219 51 11 chr1 265792546 265793113 -16400551 + MER63 DNA MER1_type 471 1060 0 421 237 35 0 chr1 265793124 265793238 -16400426 + L1ME3A LINE L1 5862 5979 -191 304 165 0 139 chr1 265793386 265793465 -16400199 + MLT1H LTR MaLR 480 547 -2 566 257 43 37 chr1 265793483 265793689 -16399975 + L1ME3A LINE L1 5973 6170 0 4254 141 84 41 chr1 265793925 265794461 -16399203 - L1MC1 LINE L1 -120 6213 5622 1882 184 62 29 chr1 265794461 265794879 -16398785 + MSTB1 LTR MaLR 1 432 0 4254 141 84 41 chr1 265794879 265795235 -16398429 - L1MC1 LINE L1 -711 5622 5283 226 224 17 17 chr1 265795237 265795295 -16398369 + MER20 DNA MER1_type 156 213 -6 756 238 178 27 chr1 265795304 265795674 -16397990 - L1ME LINE L1 -410 5754 5329 889 248 38 38 chr1 265796148 265796519 -16397145 - L1MC5 LINE L1 -296 7665 7295 1084 176 0 14 chr1 265797642 265797852 -16395812 - AluSq SINE Alu -106 207 1 686 178 34 0 chr1 265797915 265798033 -16395631 + FLAM_C SINE Alu 2 123 -10 1214 124 0 11 chr1 265798050 265798227 -16395437 + AluSg SINE Alu 1 175 -135 505 154 18 45 chr1 265798327 265798437 -16395227 - MER44D DNA MER2_type -203 406 30 366 302 39 8 chr1 265798543 265798672 -16394992 + MIR SINE MIR 81 213 -49 232 255 43 32 chr1 265798836 265798930 -16394734 - L1MC/D LINE L1 -2011 5797 5703 22 35 0 0 chr1 265798990 265799019 -16394645 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr1 265799308 265799336 -16394328 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 265799631 265799660 -16394004 + AT_rich Low_complexity Low_complexity 1 29 0 242 253 77 0 chr1 265799716 265799807 -16393857 + MLT1I LTR MaLR 312 409 0 180 337 60 12 chr1 265799963 265800046 -16393618 + L3 LINE CR1 888 974 -603 1737 114 0 4 chr1 265800109 265800371 -16393293 - AluSg SINE Alu -43 267 7 575 108 24 0 chr1 265800771 265800854 -16392810 - AluY SINE Alu -21 290 206 802 158 18 64 chr1 265800954 265801125 -16392539 - FAM SINE Alu -15 170 8 434 252 50 8 chr1 265801186 265801305 -16392359 + MLT1G1 LTR MaLR 16 139 -456 2320 120 25 8 chr1 265801404 265801762 -16391902 + THE1B LTR MaLR 1 364 0 9581 107 65 45 chr1 265801763 265803305 -16390359 + THE1B-int LTR MaLR 2 1574 -6 1294 123 49 5 chr1 265803312 265803515 -16390149 + THE1B LTR MaLR 3 214 -150 761 177 15 0 chr1 265803524 265803654 -16390010 - FLAM_C SINE Alu -1 132 1 633 146 0 0 chr1 265803656 265803759 -16389905 - AluSp/q SINE Alu -1 312 210 1195 114 12 0 chr1 265804938 265805105 -16388559 - THE1C LTR MaLR -206 169 1 526 245 0 0 chr1 265805105 265805208 -16388456 - MER1B DNA MER1_type -192 105 3 2128 106 0 19 chr1 265805775 265806086 -16387578 + AluSx SINE Alu 1 305 -7 1632 254 36 18 chr1 265806266 265806762 -16386902 - MLT1D LTR MaLR 0 505 1 1960 125 0 3 chr1 265807815 265808112 -16385552 + AluSx SINE Alu 1 296 -16 938 149 0 25 chr1 265812438 265812599 -16381065 + FRAM SINE Alu 6 162 -14 1007 280 98 58 chr1 265812624 265812834 -16380830 - L1MC4a LINE L1 -1676 6132 5932 2198 105 0 3 chr1 265812834 265813138 -16380526 - AluSg SINE Alu -7 303 1 1007 280 98 58 chr1 265813138 265813516 -16380148 - L1MC4a LINE L1 -1876 5932 5520 2112 91 7 3 chr1 265813516 265813814 -16379850 - AluSx SINE Alu -13 299 1 601 172 52 0 chr1 265813817 265813933 -16379731 - FRAM SINE Alu 0 176 55 371 295 9 0 chr1 265813955 265814060 -16379604 + LTR33 LTR ERVL 331 436 -85 1969 128 7 3 chr1 265814061 265814365 -16379299 - AluSx SINE Alu -7 305 1 2327 94 0 0 chr1 265814369 265814668 -16378996 - AluSg SINE Alu -11 299 1 1683 117 0 0 chr1 265814686 265814935 -16378729 - AluY SINE Alu 0 311 63 2486 203 40 45 chr1 265815036 265815472 -16378192 - L1MA9 LINE L1 -52 6260 5826 1919 141 3 10 chr1 265815472 265815778 -16377886 - AluJb SINE Alu -8 304 1 2486 203 40 45 chr1 265815778 265815968 -16377696 - L1MA9 LINE L1 -486 5826 5637 22 0 0 0 chr1 265816128 265816150 -16377514 + AT_rich Low_complexity Low_complexity 1 22 0 2240 60 14 0 chr1 265816157 265816440 -16377224 - AluY SINE Alu -24 287 1 468 207 128 64 chr1 265816595 265816783 -16376881 - LTR45 LTR ERV1 0 525 326 4006 164 2 3 chr1 265817202 265817837 -16375827 + LTR27 LTR ERV1 3 636 0 528 276 94 69 chr1 265817861 265818163 -16375501 + MLT1L LTR MaLR 199 426 -85 10067 110 66 10 chr1 265818188 265819680 -16373984 + THE1C-int LTR MaLR 1 1575 -5 1779 141 52 75 chr1 265819684 265820068 -16373596 + THE1C LTR MaLR 1 375 0 1224 177 9 22 chr1 265820759 265820985 -16372679 + MER58A DNA MER1_type 1 223 -1 1634 187 0 7 chr1 265821275 265821574 -16372090 + AluJb SINE Alu 1 297 -15 492 285 164 5 chr1 265822993 265823207 -16370457 - MIR SINE MIR 0 262 15 3436 177 34 42 chr1 265824655 265825388 -16368276 - LTR8A LTR ERV1 0 727 1 259 234 16 0 chr1 265825713 265825777 -16367887 + MIR SINE MIR 177 241 -21 2550 171 13 19 chr1 265826135 265826608 -16367056 + MER67C LTR ERV1 1 470 -240 481 62 15 0 chr1 265826707 265826772 -16366892 + Alu SINE Alu 3 68 -242 699 132 0 0 chr1 265876783 265876897 -16316767 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 892 158 20 0 chr1 265876901 265877047 -16316617 - MER8 DNA MER2_type -78 161 13 840 131 0 0 chr1 265877443 265877565 -16316099 + FLAM_C SINE Alu 15 136 -7 208 217 0 0 chr1 265877609 265877655 -16316009 + G-rich Low_complexity Low_complexity 2 47 0 282 125 0 109 chr1 265877714 265877778 -16315886 + AluY SINE Alu 201 257 -44 253 328 56 40 chr1 265878087 265878212 -16315452 + L2 LINE L2 3144 3270 -2 238 364 56 6 chr1 265880076 265880238 -16313426 + MIR SINE MIR 73 242 -20 534 310 13 0 chr1 265880781 265880936 -16312728 - MIR3 SINE MIR -16 192 36 352 366 0 0 chr1 265881689 265881823 -16311841 + (CA)n Simple_repeat Simple_repeat 1 134 0 302 295 39 26 chr1 265881757 265881913 -16311751 + (CATG)n Simple_repeat Simple_repeat 3 160 0 * 1468 143 44 0 chr1 265883069 265883320 -16310344 - L1MB3 LINE L1 -10 6173 5912 2539 183 7 9 chr1 265883919 265884361 -16309303 + MLT2B2 LTR ERVL 1 441 -74 5099 189 41 33 chr1 265884361 265884940 -16308724 + L1MC3 LINE L1 6224 6796 -989 363 96 0 0 chr1 265884940 265884992 -16308672 + (CATA)n Simple_repeat Simple_repeat 1 52 0 5099 189 41 33 chr1 265884992 265885042 -16308622 + L1MC3 LINE L1 6796 6844 -941 423 0 0 0 chr1 265885042 265885089 -16308575 + (CA)n Simple_repeat Simple_repeat 2 48 0 5099 189 41 33 chr1 265885089 265885206 -16308458 + L1MC3 LINE L1 6844 6958 -827 2218 117 0 0 chr1 265885206 265885528 -16308136 + AluSx SINE Alu 1 322 0 5099 189 41 33 chr1 265885528 265885914 -16307750 + L1MC3 LINE L1 6958 7369 -416 1142 168 0 0 chr1 265885914 265886105 -16307559 - AluJo SINE Alu -1 311 121 690 144 0 68 chr1 265886119 265886265 -16307399 - L1MA4 LINE L1 0 6300 6165 1212 178 42 4 chr1 265886266 265886502 -16307162 + L1MC3 LINE L1 7358 7602 -183 1688 143 7 24 chr1 265886502 265886795 -16306869 - THE1B LTR MaLR 0 364 77 514 278 85 17 chr1 265886985 265887161 -16306503 - MIR SINE MIR -73 189 2 1218 35 0 0 chr1 265887697 265887922 -16305742 + L1PA4 LINE L1 5997 6221 0 857 144 0 0 chr1 265887954 265888086 -16305578 + FRAM SINE Alu 38 169 -7 348 343 76 17 chr1 265888506 265888713 -16304951 - L1 LINE L1 -2645 3501 3294 1969 172 87 85 chr1 265889367 265889446 -16304218 - MLT2B1 LTR ERVL 0 520 443 603 0 0 0 chr1 265889446 265889513 -16304151 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 2219 154 73 15 chr1 265889520 265889930 -16303734 + Tigger2a DNA MER2_type 1 434 0 1969 172 87 85 chr1 265889930 265890360 -16303304 - MLT2B1 LTR ERVL -82 438 2 188 352 148 0 chr1 265891421 265891529 -16302135 - L2 LINE L2 -9 3263 3140 198 71 0 0 chr1 265892284 265892312 -16301352 + (TG)n Simple_repeat Simple_repeat 2 29 0 766 215 7 27 chr1 265892425 265892574 -16301090 + FRAM SINE Alu 1 146 -30 21 0 0 0 chr1 265892574 265892595 -16301069 + AT_rich Low_complexity Low_complexity 1 21 0 225 250 98 22 chr1 265893987 265894079 -16299585 - MIR SINE MIR -94 114 16 2312 122 3 0 chr1 265894558 265894870 -16298794 - AluSq SINE Alu 0 313 1 2403 97 0 0 chr1 265895465 265895764 -16297900 + AluY SINE Alu 1 299 -12 2154 177 0 8 chr1 265895864 265896232 -16297432 - MLT1A1 LTR MaLR 0 365 1 695 242 74 33 chr1 265896380 265896624 -16297040 - MLT1J2 LTR MaLR -8 442 189 2990 259 190 9 chr1 265897253 265898607 -16295057 + L2 LINE L2 1565 3162 -151 219 146 0 0 chr1 265898711 265898752 -16294912 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 311 315 94 60 chr1 265899163 265899398 -16294266 - MLT1K LTR MaLR -17 571 329 417 39 0 0 chr1 265899901 265899952 -16293712 + (TG)n Simple_repeat Simple_repeat 1 51 0 2401 94 0 16 chr1 265900680 265900998 -16292666 - AluSq SINE Alu 0 313 1 2220 100 3 3 chr1 265902564 265902853 -16290811 + AluSx SINE Alu 1 289 -23 1837 135 148 39 chr1 265903156 265903542 -16290122 + MSTA LTR MaLR 1 428 0 10224 138 24 23 chr1 265903542 265905191 -16288473 + MSTA-int LTR MaLR 1 1651 0 2390 150 67 0 chr1 265905191 265905592 -16288072 + MSTA LTR MaLR 1 428 0 2708 120 39 9 chr1 265906107 265906539 -16287125 - MER65A LTR ERV1 0 445 1 211 306 32 0 chr1 265906894 265906956 -16286708 - L2 LINE L2 -6 3266 3203 1658 184 33 23 chr1 265907678 265907982 -16285682 - AluJo SINE Alu -5 307 1 180 265 15 59 chr1 265909026 265909094 -16284570 - MER5A DNA MER1_type 0 189 125 1352 175 26 4 chr1 265909101 265909330 -16284334 + AluJb SINE Alu 76 309 -3 187 302 63 16 chr1 265909333 265909396 -16284268 - MER5A DNA MER1_type -94 95 30 266 248 132 66 chr1 265909455 265909576 -16284088 - MER5B DNA MER1_type -30 148 20 219 317 12 12 chr1 265909595 265909677 -16283987 - MER5B DNA MER1_type -6 172 91 360 235 68 8 chr1 265910164 265910296 -16283368 - L1ME4a LINE L1 0 6121 5982 1943 203 17 38 chr1 265910331 265910397 -16283267 - L1MB8 LINE L1 -112 6066 6001 981 226 16 152 chr1 265910397 265910488 -16283176 - L1MD2 LINE L1 -364 5995 5893 2020 121 7 36 chr1 265910488 265910793 -16282871 + AluSq SINE Alu 1 296 -17 981 226 16 152 chr1 265910793 265911262 -16282402 - L1MD2 LINE L1 -466 5893 5511 521 291 17 0 chr1 265911276 265911448 -16282216 - L1ME4a LINE L1 -274 5847 5673 206 311 11 56 chr1 265912883 265912973 -16280691 - MIR SINE MIR -167 95 10 2145 124 10 0 chr1 265914031 265914322 -16279342 + AluSq SINE Alu 1 294 -19 375 296 165 1 chr1 265914326 265914474 -16279190 - MIR3 SINE MIR -17 191 20 511 232 0 16 chr1 265915678 265915803 -16277861 + MER45A DNA AcHobo 28 150 -28 1937 140 26 19 chr1 265915880 265916230 -16277434 + AluSg SINE Alu 1 310 0 189 237 0 0 chr1 265916733 265916771 -16276893 + MER5B DNA MER1_type 23 60 -118 522 282 13 0 chr1 265916873 265917022 -16276642 + MER5B DNA MER1_type 1 151 -27 236 306 113 31 chr1 265917030 265917350 -16276314 - L1MC5 LINE L1 -107 7854 7509 191 234 21 0 chr1 265917385 265917432 -16276232 + MER5B DNA MER1_type 122 169 -9 256 289 99 7 chr1 265917433 265917575 -16276089 - MIR3 SINE MIR -51 157 3 462 208 10 10 chr1 265918217 265918313 -16275351 - MIR SINE MIR -71 191 96 375 214 0 51 chr1 265918608 265918706 -16274958 + MER5A DNA MER1_type 9 101 -88 233 263 12 25 chr1 265919325 265919405 -16274259 + MIR SINE MIR 138 216 -46 976 153 0 25 chr1 265919580 265919743 -16273921 + FRAM SINE Alu 1 158 -18 2245 59 0 0 chr1 265919749 265920005 -16273659 + AluY SINE Alu 24 279 -32 932 37 7 22 chr1 265920006 265920142 -16273522 + (GAAA)n Simple_repeat Simple_repeat 2 135 0 805 207 20 0 chr1 265920498 265920648 -16273016 + MER5B DNA MER1_type 17 169 -9 1881 102 113 0 chr1 265922360 265922626 -16271038 + AluSq SINE Alu 1 296 -17 451 309 48 0 chr1 265923064 265923229 -16270435 + MIR SINE MIR 73 245 -17 406 292 23 8 chr1 265923521 265923651 -16270013 + MER94 DNA DNA 1 132 -2 2351 117 0 0 chr1 265923738 265924046 -16269618 + AluSg SINE Alu 1 308 -2 1233 114 23 0 chr1 265924055 265924231 -16269433 + AluSg/x SINE Alu 122 301 -9 4038 245 63 19 chr1 265924292 265926393 -16267271 + L1MEc LINE L1 1381 3535 -2680 2099 135 24 32 chr1 265926393 265926771 -16266893 - THE1C LTR MaLR 0 375 1 344 327 10 10 chr1 265927369 265927473 -16266191 + MIR SINE MIR 16 119 -89 512 185 75 68 chr1 265927921 265928067 -16265597 - LTR45B LTR ERV1 0 489 343 306 326 16 23 chr1 265929375 265929504 -16264160 + L2 LINE L2 3140 3267 -5 8380 219 59 28 chr1 265930326 265934124 -16259540 - L1MB4 LINE L1 -2 6247 980 2057 96 48 0 chr1 265934124 265934416 -16259248 - AluSx SINE Alu 0 312 7 8380 219 59 28 chr1 265934416 265934789 -16258875 - L1MB4 LINE L1 -5269 980 620 643 164 48 55 chr1 265934792 265934938 -16258726 - MLT1E2 LTR MaLR -469 157 13 240 206 143 0 chr1 265935238 265935301 -16258363 - LTR50 LTR ERVL -639 156 85 999 205 145 11 chr1 265935564 265935847 -16257817 - LTR50 LTR ERVL -451 344 24 654 164 8 9 chr1 265936479 265936611 -16257053 + L1MC2 LINE L1 6105 6242 -91 416 220 0 50 chr1 265936639 265936739 -16256925 + L1MC2 LINE L1 6216 6310 -34 2274 146 8 16 chr1 265937248 265937634 -16256030 + MER31A LTR ERV1 83 452 -33 2293 88 3 0 chr1 265937646 265937954 -16255710 - AluSc SINE Alu 0 309 1 651 194 40 0 chr1 265938934 265939058 -16254606 + FLAM_A SINE Alu 3 131 -2 193 259 0 56 chr1 265939457 265939511 -16254153 - MIR SINE MIR -200 62 12 729 117 90 0 chr1 265940079 265940190 -16253474 + 5S rRNA rRNA 1 121 0 280 270 48 79 chr1 265940240 265940366 -16253298 - L2 LINE L2 -7 3265 3144 414 261 45 68 chr1 265940672 265940848 -16252816 + MLT1F LTR MaLR 371 542 0 237 288 51 17 chr1 265941235 265941353 -16252311 - MIR SINE MIR -76 186 65 1852 125 3 17 chr1 265942401 265942696 -16250968 + AluSq SINE Alu 1 291 -22 203 356 78 0 chr1 265944718 265944808 -16248856 - L2 LINE L2 -30 3283 3187 546 290 32 11 chr1 265945237 265945423 -16248241 - MIR SINE MIR 0 262 73 318 286 121 0 chr1 265946447 265946538 -16247126 - MIR SINE MIR 0 262 161 266 366 56 7 chr1 265947419 265947561 -16246103 + MIR SINE MIR 47 195 -67 294 196 33 43 chr1 265948209 265948301 -16245363 - Charlie5 DNA MER1_type -27 2585 2495 3218 255 72 89 chr1 265948594 265948643 -16245021 - L1MEc LINE L1 -4036 2360 2312 198 0 0 0 chr1 265948643 265948665 -16244999 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2083 98 7 0 chr1 265948668 265948953 -16244711 - AluSg SINE Alu -23 287 1 3218 255 72 89 chr1 265948953 265949710 -16243954 - L1MEc LINE L1 -4086 2310 1541 1041 157 12 0 chr1 265949710 265949882 -16243782 - FAM SINE Alu -1 174 1 3218 255 72 89 chr1 265949882 265949973 -16243691 - L1MEc LINE L1 -4855 1541 1450 1491 164 14 45 chr1 265949973 265950265 -16243399 + AluJb SINE Alu 1 283 -29 3218 255 72 89 chr1 265950265 265950422 -16243242 - L1MEc LINE L1 -4946 1450 1292 594 0 0 0 chr1 265950422 265950488 -16243176 + (TG)n Simple_repeat Simple_repeat 2 67 0 3218 255 72 89 chr1 265950488 265951060 -16242604 - L1MEc LINE L1 -5104 1292 772 1975 110 0 30 chr1 265951060 265951361 -16242303 - AluSx SINE Alu -20 292 1 3218 255 72 89 chr1 265951361 265951893 -16241771 - L1MEc LINE L1 -5624 772 232 830 325 74 6 chr1 265951904 265952267 -16241397 - L1MEc LINE L1 -5981 415 28 536 227 14 43 chr1 265952277 265952418 -16241246 + L2 LINE L2 3150 3286 -27 453 303 78 59 chr1 265953290 265953377 -16240287 - L1ME3A LINE L1 -171 5999 5915 2615 127 21 30 chr1 265953377 265953809 -16239855 + MSTC LTR MaLR 1 428 0 453 303 78 59 chr1 265953809 265954141 -16239523 - L1ME3A LINE L1 -255 5915 5572 1094 215 9 9 chr1 265954171 265954390 -16239274 - MER20 DNA MER1_type 0 219 1 560 295 114 32 chr1 265954486 265955045 -16238619 - L1ME3A LINE L1 -807 5339 4735 965 64 0 0 chr1 265955169 265955294 -16238370 + AluY SINE Alu 172 296 -15 327 304 188 14 chr1 265955295 265955502 -16238162 - L1ME3A LINE L1 -1555 4591 4349 1735 153 96 30 chr1 265955505 265955870 -16237794 + MLT1B LTR MaLR 1 389 -1 225 0 0 0 chr1 265956022 265956047 -16237617 + (A)n Simple_repeat Simple_repeat 1 25 0 461 141 0 0 chr1 265960251 265960322 -16233342 - AluJb SINE Alu -94 218 148 4578 164 38 15 chr1 265961265 265962142 -16231522 + L1MB3 LINE L1 5284 6180 -3 3081 61 34 0 chr1 265962157 265962566 -16231098 + L1PB1 LINE L1 5728 6150 -1 28 0 0 0 chr1 265962566 265962594 -16231070 + AT_rich Low_complexity Low_complexity 1 28 0 2373 148 27 18 chr1 265963954 265964372 -16229292 + MSTA LTR MaLR 8 428 0 1572 145 13 66 chr1 265964915 265965218 -16228446 + AluJb SINE Alu 2 288 -24 2130 103 7 3 chr1 265965231 265965541 -16228123 + AluSp SINE Alu 1 311 -2 25 51 0 0 chr1 265965542 265965581 -16228083 + AT_rich Low_complexity Low_complexity 1 39 0 705 301 57 27 chr1 265965661 265966100 -16227564 - L1ME4a LINE L1 -149 5972 5521 2251 91 0 35 chr1 265966510 265966651 -16227013 + AluSg SINE Alu 1 145 -165 2729 13 0 0 chr1 265966651 265966959 -16226705 + AluYa5 SINE Alu 1 308 -3 2251 91 0 35 chr1 265966959 265967135 -16226529 + AluSg SINE Alu 145 307 -3 337 292 9 44 chr1 265967217 265967330 -16226334 - MIR SINE MIR -106 156 48 1686 146 81 21 chr1 265968184 265968519 -16225145 + L1MA4A LINE L1 5944 6298 -5 242 270 167 0 chr1 265970109 265970219 -16223445 + MIR SINE MIR 101 237 -25 187 245 0 20 chr1 265971877 265971926 -16221738 + L2 LINE L2 3221 3268 -4 526 158 84 7 chr1 265972168 265972294 -16221370 + L1MB2 LINE L1 5936 6065 -106 607 129 0 10 chr1 265972294 265972394 -16221270 + L1MA8 LINE L1 6187 6286 -5 802 144 0 0 chr1 265972408 265972540 -16221124 + L1MB3 LINE L1 6050 6181 -2 1190 265 111 18 chr1 265972632 265973085 -16220579 + MLT1H LTR MaLR 11 547 -2 586 246 40 8 chr1 265975856 265976009 -16217655 + MIR SINE MIR 40 197 -65 608 204 0 8 chr1 265976379 265976511 -16217153 - FLAM_A SINE Alu 0 142 12 196 266 117 43 chr1 265977103 265977197 -16216467 + L2 LINE L2 3213 3313 0 217 191 36 95 chr1 265977913 265977997 -16215667 + L3 LINE CR1 1399 1477 -100 181 213 43 64 chr1 265978041 265978088 -16215576 - L2 LINE L2 -60 3253 3208 660 200 0 67 chr1 265979829 265979994 -16213670 - MER63B DNA MER1_type 0 435 282 3964 152 16 34 chr1 265979995 265980741 -16212923 + L1MB4 LINE L1 5447 6179 -1 2283 157 88 48 chr1 265980741 265981220 -16212444 + L1MC1 LINE L1 5834 6331 -2 756 230 179 16 chr1 265981233 265981485 -16212179 - MER63B DNA MER1_type -141 295 3 3800 135 86 1 chr1 265982186 265982839 -16210825 + L1MC1 LINE L1 5626 6333 0 189 154 0 0 chr1 265983772 265983811 -16209853 + T-rich Low_complexity Low_complexity 1 39 0 519 234 51 7 chr1 265987570 265987707 -16205957 - MIR SINE MIR -110 152 10 21 36 0 0 chr1 265987946 265987974 -16205690 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr1 265988094 265988118 -16205546 + GC_rich Low_complexity Low_complexity 1 24 0 188 128 0 64 chr1 265988352 265988430 -16205234 + (CCCCG)n Simple_repeat Simple_repeat 2 74 0 2293 87 0 0 chr1 265990190 265990500 -16203164 + AluSg SINE Alu 1 310 0 1745 179 50 42 chr1 265990537 265990894 -16202770 + MLT1A1 LTR MaLR 5 364 -1 1368 226 23 46 chr1 265990959 265991309 -16202355 - MLT1A2 LTR MaLR -32 342 1 2124 116 5 143 chr1 265991660 265991901 -16201763 + MSTC LTR MaLR 1 157 -271 2278 97 0 0 chr1 265991901 265992212 -16201452 - AluY SINE Alu 0 311 1 2124 116 5 143 chr1 265992212 265992402 -16201262 + MSTC LTR MaLR 157 372 -56 677 165 158 0 chr1 265992402 265992535 -16201129 - L1PB4 LINE L1 -3 6153 6000 341 138 46 0 chr1 265992536 265992601 -16201063 + MSTC LTR MaLR 361 428 0 1802 144 0 4 chr1 265992644 265992914 -16200750 + AluJb SINE Alu 1 269 -43 255 234 180 45 chr1 265993076 265993187 -16200477 + L2 LINE L2 3188 3313 0 187 215 108 31 chr1 265993202 265993267 -16200397 - MIR SINE MIR -103 159 90 1555 183 0 14 chr1 265993610 265993889 -16199775 + AluJo SINE Alu 26 300 -12 517 219 70 107 chr1 265994466 265994582 -16199082 - MER5A DNA MER1_type -2 187 79 686 173 63 16 chr1 265994582 265994709 -16198955 - FLAM_C SINE Alu 0 133 1 517 219 70 107 chr1 265994709 265994779 -16198885 - MER5A DNA MER1_type -110 79 8 2231 90 3 0 chr1 265995616 265995917 -16197747 + AluY SINE Alu 1 302 -9 647 282 84 27 chr1 265996070 265996368 -16197296 - LTR16C LTR ERVL 0 491 177 279 210 118 84 chr1 265996521 265996640 -16197024 + MIR SINE MIR 107 229 -33 185 320 30 30 chr1 265996762 265996862 -16196802 + L2 LINE L2 3169 3268 -4 1228 167 19 14 chr1 265997735 265997951 -16195713 - Tigger1 DNA MER2_type 0 2418 2202 922 184 6 6 chr1 265997932 265998095 -16195569 - Tigger1 DNA MER2_type -2255 163 1 * 196 310 101 31 chr1 265998128 265998257 -16195407 + L2 LINE L2 2948 3085 -187 434 238 3 53 chr1 265999369 265999804 -16193860 + C-rich Low_complexity Low_complexity 1 413 0 228 332 57 71 chr1 266000780 266000991 -16192673 - MIR SINE MIR -48 214 7 392 320 120 6 chr1 266001017 266001192 -16192472 - L2 LINE L2 0 3313 3119 357 302 135 0 chr1 266001223 266001349 -16192315 - MIR SINE MIR -71 191 49 2192 90 23 0 chr1 266001657 266001956 -16191708 + AluSx SINE Alu 7 312 0 4420 126 58 4 chr1 266001981 266002693 -16190971 - LTR1 LTR ERV1 0 785 36 2435 60 0 0 chr1 266003182 266003483 -16190181 + AluY SINE Alu 1 301 -10 353 186 93 54 chr1 266003725 266003854 -16189810 + MIR SINE MIR 20 153 -109 2363 188 117 57 chr1 266004065 266004713 -16188951 + LTR8A LTR ERV1 34 720 -7 233 299 15 0 chr1 266005738 266005805 -16187859 - MER5A DNA MER1_type -113 76 9 265 274 0 0 chr1 266006071 266006133 -16187531 - MER115 DNA AcHobo -23 670 609 2244 92 3 0 chr1 266006422 266006725 -16186939 - AluSx SINE Alu -8 304 1 949 211 0 0 chr1 266006977 266007152 -16186512 - FAM SINE Alu 0 175 1 2149 110 0 49 chr1 266007229 266007557 -16186107 - AluSx SINE Alu 0 312 1 363 335 102 40 chr1 266007652 266008135 -16185529 - L2 LINE L2 -640 2674 2146 2281 71 0 3 chr1 266008135 266008431 -16185233 + AluSq SINE Alu 1 295 -18 363 335 102 40 chr1 266008431 266008544 -16185120 - L2 LINE L2 -1168 2146 2041 1685 143 170 24 chr1 266009477 266009848 -16183816 - MSTA LTR MaLR -2 426 2 873 182 0 6 chr1 266010343 266010508 -16183156 + AluJo SINE Alu 119 282 -30 517 263 163 65 chr1 266010614 266010663 -16183001 - L1ME4a LINE L1 -2 6119 6076 2196 98 0 0 chr1 266010663 266010959 -16182705 + AluSc SINE Alu 1 296 -13 517 263 163 65 chr1 266010959 266011247 -16182417 - L1ME4a LINE L1 -45 6076 5749 1844 127 0 7 chr1 266012435 266012742 -16180922 - AluSx SINE Alu 0 305 1 1303 167 4 20 chr1 266012950 266013195 -16180469 + AluJo SINE Alu 1 241 -71 567 332 97 0 chr1 266013306 266013532 -16180132 + MIR SINE MIR 15 262 0 386 301 96 14 chr1 266013538 266013684 -16179980 + L2 LINE L2 3115 3272 0 1570 154 40 30 chr1 266013975 266014274 -16179390 + 7SLRNA srpRNA srpRNA 16 317 -3 2857 151 30 78 chr1 266014350 266014926 -16178738 + LTR35 LTR ERV1 64 611 -7 314 208 19 75 chr1 266015261 266015367 -16178297 - U13 snRNA snRNA 0 104 5 690 165 0 9 chr1 266015448 266015563 -16178101 + FLAM_A SINE Alu 10 123 -19 2451 162 16 28 chr1 266015585 266016016 -16177648 - MSTB LTR MaLR 0 426 1 1420 193 23 23 chr1 266016020 266016306 -16177358 + AluJo SINE Alu 7 295 -17 1560 116 120 4 chr1 266016306 266016581 -16177083 + AluSg1 SINE Alu 1 307 -2 1420 193 23 23 chr1 266016581 266016600 -16177064 + AluJo SINE Alu 294 312 0 1784 177 0 0 chr1 266017036 266017341 -16176323 - AluJo SINE Alu -4 308 4 301 336 126 0 chr1 266017577 266017720 -16175944 - MIR3 SINE MIR -10 198 38 393 329 78 30 chr1 266018092 266018323 -16175341 + L2 LINE L2 3020 3261 -11 428 232 21 0 chr1 266018401 266018496 -16175168 + MER94 DNA DNA 2 98 -36 232 244 52 52 chr1 266018749 266018864 -16174800 + MLT1K LTR MaLR 202 316 -272 1315 233 77 18 chr1 266018965 266019355 -16174309 - Zaphod DNA AcHobo -13 4018 3606 894 211 117 23 chr1 266019372 266019920 -16173744 - Zaphod DNA AcHobo -3047 984 339 612 148 115 0 chr1 266020717 266020839 -16172825 + L1ME3A LINE L1 6027 6162 -8 211 250 29 59 chr1 266020839 266020907 -16172757 + L3 LINE CR1 1041 1106 -471 398 278 56 7 chr1 266021021 266021165 -16172499 + MIR3 SINE MIR 47 197 -11 445 238 70 64 chr1 266021798 266021928 -16171736 + MIR SINE MIR 84 217 -45 2237 69 0 31 chr1 266021928 266022246 -16171418 + AluSc SINE Alu 1 308 -1 445 238 70 64 chr1 266022246 266022287 -16171377 + MIR SINE MIR 217 256 -6 257 333 20 0 chr1 266023152 266023254 -16170410 + MER5A DNA MER1_type 4 107 -82 742 249 18 0 chr1 266023437 266023606 -16170058 + MER3 DNA MER1_type 1 125 -84 282 316 77 57 chr1 266023606 266023853 -16169811 - L2 LINE L2 -726 2588 2337 2617 13 0 3 chr1 266024094 266024396 -16169268 - AluYa5 SINE Alu -10 301 1 2745 199 75 67 chr1 266024479 266025256 -16168408 + MER21B LTR ERV1 12 794 -69 876 216 55 20 chr1 266025417 266025616 -16168048 - MER3 DNA MER1_type 0 209 4 253 356 141 23 chr1 266027125 266027302 -16166362 + MIR SINE MIR 28 225 -37 1950 147 0 14 chr1 266028027 266028319 -16165345 - AluJo SINE Alu -24 288 1 916 94 71 0 chr1 266029051 266029178 -16164486 + AluSq/x SINE Alu 1 136 -176 1899 113 0 4 chr1 266029178 266029434 -16164230 + AluSx SINE Alu 1 255 -57 217 344 0 0 chr1 266031012 266031073 -16162591 + L2 LINE L2 3253 3313 0 1291 201 76 8 chr1 266033207 266033471 -16160193 - AluJo SINE Alu -30 282 1 2626 116 27 36 chr1 266034017 266034222 -16159442 + Tigger2a DNA MER2_type 1 206 -2502 2321 87 7 0 chr1 266034222 266034522 -16159142 - AluSg SINE Alu -8 302 1 2626 116 27 36 chr1 266034522 266034754 -16158910 + Tigger2a DNA MER2_type 206 434 0 240 35 0 0 chr1 266035175 266035204 -16158460 + (TG)n Simple_repeat Simple_repeat 1 29 0 543 209 73 26 chr1 266035294 266035485 -16158179 + L1ME4a LINE L1 5689 5888 -233 189 0 0 0 chr1 266035607 266035628 -16158036 + (TC)n Simple_repeat Simple_repeat 2 22 0 274 215 124 73 chr1 266037068 266037246 -16156418 - MIR SINE MIR -63 145 9 1444 250 119 18 chr1 266037772 266038284 -16155380 + MER20B DNA MER1_type 25 588 -195 207 0 0 0 chr1 266039011 266039034 -16154630 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 257 146 0 0 chr1 266039060 266039108 -16154556 + AluSx SINE Alu 251 298 -4 * 721 183 209 48 chr1 266039102 266039370 -16154294 - MLT1A1 LTR MaLR -54 311 1 23 33 0 0 chr1 266041343 266041373 -16152291 + AT_rich Low_complexity Low_complexity 1 30 0 289 356 88 47 chr1 266041810 266042467 -16151197 + L2 LINE L2 2230 2913 -401 234 287 231 0 chr1 266042608 266042716 -16150948 + L2 LINE L2 3102 3234 -38 22 56 0 0 chr1 266042840 266042876 -16150788 + AT_rich Low_complexity Low_complexity 1 36 0 2482 51 0 0 chr1 266044165 266044461 -16149203 - AluY SINE Alu -15 296 1 2360 195 44 33 chr1 266045961 266046509 -16147155 - MER68 LTR ERV1 -6 556 3 1344 278 121 22 chr1 266046841 266048547 -16145117 - L1ME3A LINE L1 -278 5892 4012 516 217 106 31 chr1 266048550 266048711 -16144953 - FAM SINE Alu -2 173 1 2366 72 7 0 chr1 266049152 266049443 -16144221 - AluY SINE Alu -18 293 1 502 135 67 0 chr1 266049748 266049852 -16143812 + MER3 DNA MER1_type 56 166 -43 1359 194 26 26 chr1 266049857 266050243 -16143421 + MER3 DNA MER1_type 2234 2619 0 2356 84 0 0 chr1 266050467 266050763 -16142901 + AluSc SINE Alu 1 296 -13 345 385 34 0 chr1 266050968 266051116 -16142548 + MIR3 SINE MIR 55 207 -1 367 231 22 0 chr1 266052288 266052379 -16141285 - FLAM_A SINE Alu -14 119 27 2211 117 0 0 chr1 266052803 266053102 -16140562 - AluSx SINE Alu -13 299 1 233 179 0 0 chr1 266054679 266054718 -16138946 + L2 LINE L2 3265 3303 -10 644 311 83 65 chr1 266055025 266055971 -16137693 - L2 LINE L2 0 3272 2293 21 36 0 0 chr1 266057561 266057589 -16136075 + AT_rich Low_complexity Low_complexity 1 28 0 257 341 183 12 chr1 266057610 266057774 -16135890 - MIR SINE MIR -50 212 21 312 221 15 0 chr1 266057783 266057851 -16135813 - L2 LINE L2 0 3313 3245 182 225 50 0 chr1 266058135 266058175 -16135489 - L2 LINE L2 -26 3287 3246 1705 188 0 23 chr1 266061123 266061432 -16132232 - AluJo SINE Alu -10 302 1 311 81 0 149 chr1 266063070 266063144 -16130520 - L1PA10 LINE L1 0 6168 6106 1069 30 8 0 chr1 266063144 266063278 -16130386 + L1PA4 LINE L1 5725 5859 -296 42 57 0 0 chr1 266064459 266064529 -16129135 + AT_rich Low_complexity Low_complexity 1 70 0 184 273 0 0 chr1 266065032 266065076 -16128588 + MIR SINE MIR 40 83 -179 414 229 8 133 chr1 266066394 266066634 -16127030 + MER102b DNA MER1_type 106 315 -26 323 243 66 44 chr1 266066797 266066933 -16126731 + L1ME4a LINE L1 5981 6119 -2 310 234 32 24 chr1 266066942 266067066 -16126598 - L1ME4a LINE L1 -18 6103 5979 1354 92 117 0 chr1 266067291 266067497 -16126167 + MER30 DNA MER1_type 1 230 0 347 315 130 8 chr1 266067711 266067965 -16125699 + L2 LINE L2 2473 2757 -557 529 230 38 84 chr1 266067975 266068236 -16125428 + MER112 DNA MER1_type 1 249 -11 1762 177 17 7 chr1 266068319 266068619 -16125045 - AluJo SINE Alu -9 303 1 303 361 77 16 chr1 266068661 266068855 -16124809 + L2 LINE L2 2905 3110 -162 223 309 0 0 chr1 266068869 266068937 -16124727 - L2 LINE L2 -3 3310 3243 33 25 0 0 chr1 266069206 266069246 -16124418 + AT_rich Low_complexity Low_complexity 1 40 0 2426 68 6 13 chr1 266069467 266069778 -16123886 - AluY SINE Alu -2 309 1 26 50 0 0 chr1 266070051 266070091 -16123573 + AT_rich Low_complexity Low_complexity 1 40 0 317 267 124 0 chr1 266072512 266072617 -16121047 + L1ME4a LINE L1 5791 5908 -213 26 0 0 0 chr1 266072695 266072721 -16120943 + AT_rich Low_complexity Low_complexity 1 26 0 522 227 208 24 chr1 266073277 266073484 -16120180 - MIR SINE MIR -5 257 13 273 350 31 0 chr1 266073860 266073957 -16119707 + MIR SINE MIR 46 145 -117 264 333 0 9 chr1 266174487 266174592 -16019072 - MIR SINE MIR -55 207 104 2365 98 0 7 chr1 266175104 266175410 -16018254 - AluSx SINE Alu -8 304 1 338 252 108 7 chr1 266175627 266175766 -16017898 - L1ME4a LINE L1 -2 6119 5967 701 236 31 0 chr1 266176168 266176329 -16017335 - MLT1F LTR MaLR -60 507 342 845 152 0 22 chr1 266176329 266176467 -16017197 - MER49 LTR ERV1 0 923 789 504 265 7 26 chr1 266176490 266176641 -16017023 - LTR7 LTR ERV1 0 450 303 4520 156 29 10 chr1 266177010 266177778 -16015886 - MER49 LTR ERV1 -141 782 1 952 260 49 52 chr1 266177778 266177918 -16015746 - MLT1F LTR MaLR -226 316 177 2260 103 7 3 chr1 266177918 266178218 -16015446 + AluSx SINE Alu 1 301 -11 952 260 49 52 chr1 266178218 266178363 -16015301 - MLT1F LTR MaLR -365 177 32 1017 176 0 12 chr1 266178508 266178673 -16014991 - FRAM SINE Alu 0 166 4 1721 246 68 79 chr1 266178686 266179069 -16014595 - HAL1 LINE L1 -169 2338 1952 1865 146 0 52 chr1 266179069 266179398 -16014266 + AluJb SINE Alu 1 312 0 1721 246 68 79 chr1 266179398 266179871 -16013793 - HAL1 LINE L1 -555 1952 1492 1624 288 113 43 chr1 266179869 266180699 -16012965 - HAL1 LINE L1 -1619 888 1 * 714 174 8 0 chr1 266180741 266180862 -16012802 - AluJb SINE Alu -22 290 169 1742 156 44 0 chr1 266180744 266181019 -16012645 - AluJb SINE Alu -25 287 1 497 93 0 155 chr1 266181916 266181972 -16011692 - MLT2D LTR ERVL 0 414 378 216 0 0 0 chr1 266181972 266181996 -16011668 + (TG)n Simple_repeat Simple_repeat 2 25 0 497 93 0 155 chr1 266181996 266182036 -16011628 - MLT2D LTR ERVL -36 378 333 828 79 0 35 chr1 266182037 266182151 -16011513 + FLAM_C SINE Alu 1 110 -33 28 29 0 0 chr1 266182160 266182195 -16011469 + AT_rich Low_complexity Low_complexity 1 35 0 2080 163 9 9 chr1 266182201 266182550 -16011114 - MLT2D LTR ERVL -65 349 1 2621 47 0 0 chr1 266182779 266183077 -16010587 + AluY SINE Alu 1 298 -13 316 296 48 24 chr1 266184822 266184947 -16008717 + L2 LINE L2 3137 3264 -8 201 356 30 44 chr1 266185043 266185178 -16008486 - L2 LINE L2 -2 3270 3138 841 149 0 15 chr1 266185547 266185681 -16007983 + FLAM_C SINE Alu 2 133 0 21 0 0 0 chr1 266187229 266187250 -16006414 + AT_rich Low_complexity Low_complexity 1 21 0 914 153 73 0 chr1 266187374 266187524 -16006140 + L1MC/D LINE L1 14 174 -6366 631 164 139 8 chr1 266187524 266187645 -16006019 + MLT1B LTR MaLR 1 137 -253 2009 158 127 6 chr1 266187645 266188006 -16005658 - LTR32 LTR ERVL 0 471 67 1724 143 4 0 chr1 266188002 266188261 -16005403 + MLT1B LTR MaLR 131 390 0 * 5218 201 114 99 chr1 266188261 266189128 -16004536 + L1MC/D LINE L1 170 1023 -5517 715 191 0 23 chr1 266189128 266189259 -16004405 - AluSq/x SINE Alu -179 134 7 5218 201 114 99 chr1 266189259 266190342 -16003322 + L1MC/D LINE L1 1023 2280 -4260 4468 237 38 15 chr1 266190346 266191614 -16002050 + L1MC/D LINE L1 4376 5672 -868 600 171 0 18 chr1 266191614 266191725 -16001939 + FRAM SINE Alu 36 144 -32 216 0 0 0 chr1 266191728 266191752 -16001912 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 589 118 82 0 chr1 266191752 266191862 -16001802 + L1MC/D LINE L1 5671 5789 -847 1835 78 0 0 chr1 266191863 266192082 -16001582 + AluSq SINE Alu 1 219 -94 823 113 0 16 chr1 266192082 266192206 -16001458 + AluSg/x SINE Alu 188 309 -3 485 72 181 4 chr1 266192217 266192311 -16001353 + L1MC/D LINE L1 5768 5878 -723 478 290 3 11 chr1 266192365 266192516 -16001148 + L1M4 LINE L1 3972 4121 -2025 3112 178 69 45 chr1 266192580 266192997 -16000667 + L1MD1 LINE L1 5495 5937 -305 1756 122 7 58 chr1 266192997 266193275 -16000389 - AluSx SINE Alu -17 295 32 3112 178 69 45 chr1 266193275 266193564 -16000100 + L1MD1 LINE L1 5937 6218 -24 605 234 29 47 chr1 266193564 266193735 -15999929 + AluJo SINE Alu 122 289 -23 2014 166 80 3 chr1 266194504 266194877 -15998787 + MSTB LTR MaLR 1 402 -24 268 150 0 0 chr1 266195626 266195666 -15997998 + MSTB LTR MaLR 387 426 0 492 314 75 44 chr1 266195686 266196075 -15997589 + L1ME LINE L1 609 1009 -5625 1262 268 69 47 chr1 266196399 266197016 -15996648 + L1ME LINE L1 882 1532 -5114 189 0 0 0 chr1 266197016 266197037 -15996627 + (GGA)n Simple_repeat Simple_repeat 3 23 0 1262 268 69 47 chr1 266197037 266197281 -15996383 + L1ME LINE L1 1532 1769 -4877 1398 253 35 22 chr1 266197305 266197708 -15995956 + L1MCb LINE L1 1 408 -5637 654 73 0 0 chr1 266197708 266197790 -15995874 + AluS SINE Alu 2 83 -229 304 302 10 0 chr1 266197866 266197962 -15995702 - L1MEc LINE L1 -4325 2071 1975 544 278 95 74 chr1 266198020 266198938 -15994726 + L1M4 LINE L1 3384 4328 -1818 562 196 0 0 chr1 266198938 266199050 -15994614 + FLAM_A SINE Alu 3 114 -19 544 278 95 74 chr1 266199050 266199161 -15994503 + L1M4 LINE L1 4328 4435 -1711 29 0 0 0 chr1 266199162 266199191 -15994473 + AT_rich Low_complexity Low_complexity 1 29 0 433 125 34 28 chr1 266199192 266199368 -15994296 + (TTAAA)n Simple_repeat Simple_repeat 4 180 0 457 352 47 29 chr1 266199368 266199880 -15993784 + L1M4 LINE L1 4272 4792 -1354 230 366 120 6 chr1 266199998 266200473 -15993191 + L2 LINE L2 2416 2944 -370 2375 106 0 0 chr1 266200515 266200827 -15992837 - AluSx SINE Alu 0 312 1 1187 284 25 14 chr1 266200835 266201191 -15992473 - L1MD2 LINE L1 0 6359 6000 1697 184 0 7 chr1 266201462 266201750 -15991914 + AluJb SINE Alu 1 286 -26 32 0 0 0 chr1 266201750 266201782 -15991882 + AT_rich Low_complexity Low_complexity 1 32 0 287 268 89 42 chr1 266202751 266202919 -15990745 + L2 LINE L2 3138 3313 0 265 206 44 29 chr1 266203992 266204060 -15989604 - MLT1K LTR MaLR -4 584 516 2972 39 11 3 chr1 266204544 266204901 -15988763 + L1PA5 LINE L1 5789 6148 -6 255 31 0 0 chr1 266205077 266205109 -15988555 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 8047 29 0 140 chr1 266205109 266206327 -15987337 + SVA Other Other 1 1047 -339 2443 75 3 0 chr1 266206361 266206669 -15986995 + AluY SINE Alu 2 310 -1 2175 144 0 3 chr1 266207116 266207429 -15986235 - AluJb SINE Alu 0 312 1 626 257 7 14 chr1 266208113 266208257 -15985407 + MLT1K LTR MaLR 408 550 -38 2279 112 0 7 chr1 266208366 266208671 -15984993 - AluSx SINE Alu -9 303 1 1067 158 30 0 chr1 266208933 266209135 -15984529 + L1MB3 LINE L1 5285 5492 -682 1688 182 4 4 chr1 266209138 266209418 -15984246 + AluJo SINE Alu 3 282 -30 3689 163 30 28 chr1 266209495 266209733 -15983931 + L1MB3 LINE L1 5475 5711 -472 2075 106 11 7 chr1 266209733 266210062 -15983602 + AluSx SINE Alu 1 330 0 3689 163 30 28 chr1 266210062 266210528 -15983136 + L1MB3 LINE L1 5711 6181 -2 234 299 110 8 chr1 266210579 266210706 -15982958 - MIR SINE MIR -67 195 56 1300 245 39 23 chr1 266210900 266211284 -15982380 + MLT1B LTR MaLR 1 390 0 2506 84 0 0 chr1 266211352 266211660 -15982004 + AluY SINE Alu 1 308 -3 201 240 93 27 chr1 266212226 266212301 -15981363 - MIR SINE MIR -20 242 163 21 0 0 0 chr1 266212301 266212322 -15981342 + AT_rich Low_complexity Low_complexity 1 21 0 819 152 21 7 chr1 266212330 266212475 -15981189 - L1MB3 LINE L1 -31 6152 6006 1161 193 106 4 chr1 266212487 266212752 -15980912 + AluJo SINE Alu 12 303 -9 846 206 0 12 chr1 266212756 266212921 -15980743 + FRAM SINE Alu 2 164 -2 2119 140 0 0 chr1 266212921 266213243 -15980421 - L1MB3 LINE L1 -174 6009 5688 1999 121 3 52 chr1 266213243 266213313 -15980351 - MER2 DNA MER2_type 0 345 273 2178 103 0 20 chr1 266213313 266213613 -15980051 + AluSq SINE Alu 1 294 -19 189 0 0 0 chr1 266213622 266213643 -15980021 + (TG)n Simple_repeat Simple_repeat 2 22 0 1999 121 3 52 chr1 266213643 266213892 -15979772 - MER2 DNA MER2_type -80 265 32 7027 203 21 25 chr1 266213893 266214919 -15978745 - L1MB3 LINE L1 -555 5628 4616 1466 155 117 15 chr1 266214919 266215184 -15978480 + AluJo SINE Alu 1 292 -20 7027 203 21 25 chr1 266215184 266216064 -15977600 - L1MB3 LINE L1 -1567 4616 3734 493 250 62 21 chr1 266216064 266216208 -15977456 - MIR SINE MIR -112 150 1 287 289 40 60 chr1 266216248 266216397 -15977267 + MIR SINE MIR 73 218 -44 575 314 102 18 chr1 266217827 266218276 -15975388 - L2 LINE L2 0 3313 2827 438 20 0 0 chr1 266218380 266218431 -15975233 + (TG)n Simple_repeat Simple_repeat 2 52 0 1000 144 46 6 chr1 266218437 266218611 -15975053 + L1MA6 LINE L1 5609 5789 -511 2447 93 0 0 chr1 266218647 266218949 -15974715 + AluSg SINE Alu 1 302 -8 2911 166 6 18 chr1 266218995 266219544 -15974120 + L1MA6 LINE L1 5759 6300 0 400 341 80 19 chr1 266219569 266219883 -15973781 - L2 LINE L2 -609 2705 2373 7510 144 59 28 chr1 266220532 266222086 -15971578 + L1MA5A LINE L1 4016 5521 -776 700 202 23 0 chr1 266222086 266222215 -15971449 + FLAM_C SINE Alu 2 133 0 7510 144 59 28 chr1 266222215 266222319 -15971345 + L1MA5A LINE L1 5521 5620 -677 2466 87 3 0 chr1 266222319 266222628 -15971036 + AluSp SINE Alu 1 310 -3 7510 144 59 28 chr1 266222628 266223166 -15970498 + L1MA5A LINE L1 5620 6291 -6 29 0 0 0 chr1 266223166 266223195 -15970469 + AT_rich Low_complexity Low_complexity 1 29 0 5453 141 26 9 chr1 266223209 266224131 -15969533 + L1MA8 LINE L1 5352 6289 -2 718 128 9 9 chr1 266224351 266224460 -15969204 - MER54B LTR ERVL -111 682 574 1107 113 83 0 chr1 266224460 266224628 -15969036 + MER54B LTR ERVL 283 464 -329 3513 125 37 52 chr1 266224632 266225223 -15968441 - MER54B LTR ERVL -211 582 1 423 316 6 18 chr1 266225269 266225437 -15968227 - MIR SINE MIR -82 180 15 1957 184 15 3 chr1 266226300 266226642 -15967022 + MER7A DNA MER2_type 1 344 -2 797 237 119 22 chr1 266226728 266227235 -15966429 + MLT1E2 LTR MaLR 1 624 0 999 236 18 64 chr1 266227272 266227599 -15966065 - L1ME1 LINE L1 -21 6145 5834 2272 126 78 41 chr1 266227601 266227671 -15965993 - MSTA LTR MaLR 0 428 362 1717 182 28 0 chr1 266227671 266227957 -15965707 + AluJb SINE Alu 1 294 -18 2272 126 78 41 chr1 266227957 266228299 -15965365 - MSTA LTR MaLR -66 362 1 9775 158 12 13 chr1 266228299 266229952 -15963712 - MSTA-int LTR MaLR 0 1651 1 1340 174 0 0 chr1 266229952 266230164 -15963500 - MSTA LTR MaLR 0 426 215 255 125 0 0 chr1 266230181 266230221 -15963443 + (GA)n Simple_repeat Simple_repeat 1 40 0 960 170 106 50 chr1 266230224 266230442 -15963222 - MSTA LTR MaLR -198 230 1 1145 207 111 5 chr1 266230442 266230747 -15962917 - L1ME1 LINE L1 -331 5835 5497 240 274 74 0 chr1 266230749 266230844 -15962820 + MIR SINE MIR 90 191 -71 23 78 0 0 chr1 266231462 266231513 -15962151 + AT_rich Low_complexity Low_complexity 1 51 0 847 283 53 12 chr1 266232019 266232263 -15961401 - MIR SINE MIR 0 262 9 192 77 0 0 chr1 266233175 266233201 -15960463 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 213 121 0 0 chr1 266233350 266233383 -15960281 + (T)n Simple_repeat Simple_repeat 1 33 0 1775 181 0 32 chr1 266233652 266233961 -15959703 + AluJo SINE Alu 1 299 -13 1941 150 20 0 chr1 266235346 266235640 -15958024 - AluSx SINE Alu -12 300 1 2086 121 0 13 chr1 266235698 266235861 -15957803 - AluSg SINE Alu -16 294 135 2279 101 0 7 chr1 266235861 266236190 -15957474 - AluY SINE Alu 0 311 1 2086 121 0 13 chr1 266236190 266236324 -15957340 - AluSg SINE Alu -175 135 1 270 371 40 8 chr1 266236324 266236448 -15957216 - MIR3 SINE MIR -27 181 54 256 100 0 0 chr1 266236648 266236688 -15956976 + MER65B LTR ERV1 2 41 -490 15534 127 28 12 chr1 266237974 266238045 -15955619 - L1PBa LINE L1 -4153 2710 2642 2174 107 3 0 chr1 266238045 266238336 -15955328 + AluY SINE Alu 1 292 -19 15534 127 28 12 chr1 266238336 266239819 -15953845 - L1PBa LINE L1 -4221 2642 1096 2223 118 0 13 chr1 266239819 266240123 -15953541 - AluSx SINE Alu -12 300 1 15534 127 28 12 chr1 266240123 266241234 -15952430 - L1PBa LINE L1 -5767 1096 3 4878 233 36 17 chr1 266241331 266242900 -15950764 - L1M1 LINE L1 -4360 2372 1124 2542 260 24 82 chr1 266242904 266242964 -15950700 + L2 LINE L2 2174 2236 -1077 1654 202 87 8 chr1 266242964 266243331 -15950333 + MSTD LTR MaLR 1 396 0 2542 260 24 82 chr1 266243331 266244477 -15949187 + L2 LINE L2 2236 3312 -1 28 0 0 0 chr1 266244559 266244587 -15949077 + AT_rich Low_complexity Low_complexity 1 28 0 34 93 0 0 chr1 266244837 266244934 -15948730 + AT_rich Low_complexity Low_complexity 1 97 0 1358 183 132 0 chr1 266245521 266245778 -15947886 - AluJo SINE Alu -21 291 1 329 106 38 0 chr1 266246024 266246086 -15947578 - MSTC LTR MaLR -354 72 3 854 213 69 31 chr1 266246893 266247184 -15946480 - L1MC4 LINE L1 -1 8041 7740 1924 158 3 3 chr1 266247198 266247496 -15946168 + AluJo SINE Alu 1 298 -14 1377 204 78 0 chr1 266247546 266247865 -15945799 + MER2 DNA MER2_type 2 345 0 252 208 0 0 chr1 266247886 266247934 -15945730 - L1MD3 LINE L1 -233 7762 7715 5813 126 18 50 chr1 266247961 266248011 -15945653 - L1MA5 LINE L1 -2 6298 6248 1971 128 3 26 chr1 266248011 266248316 -15945348 - AluSq SINE Alu -15 298 1 5813 126 18 50 chr1 266248316 266250072 -15943592 - L1MA5 LINE L1 -52 6248 4557 2339 206 114 61 chr1 266250070 266250542 -15943122 - L1MC4 LINE L1 -406 7636 7190 * 2239 117 0 0 chr1 266250542 266250841 -15942823 - AluSx SINE Alu -13 299 1 2339 206 114 61 chr1 266250841 266251256 -15942408 - L1MC4 LINE L1 -852 7190 6702 486 265 30 78 chr1 266251272 266251385 -15942279 - L1MEc LINE L1 -5141 1255 1138 1870 171 7 10 chr1 266251385 266251550 -15942114 - AluJb SINE Alu -3 309 144 2250 110 10 0 chr1 266251550 266251860 -15941804 - AluSp SINE Alu 0 313 1 1870 171 7 10 chr1 266251860 266252003 -15941661 - AluJb SINE Alu -168 144 2 486 265 30 78 chr1 266252003 266252221 -15941443 - L1MEc LINE L1 -5258 1138 940 2283 76 0 3 chr1 266252225 266252516 -15941148 + AluY SINE Alu 1 290 -21 358 296 13 30 chr1 266252606 266252839 -15940825 - L1M4 LINE L1 -3788 2358 2130 685 298 92 20 chr1 266253104 266253748 -15939916 - HAL1b LINE L1 -501 847 158 570 210 0 0 chr1 266254040 266254164 -15939500 + L1MC4 LINE L1 7524 7647 -395 333 136 99 25 chr1 266254156 266254237 -15939427 + L1MC2 LINE L1 5815 5901 -443 * 1419 167 57 4 chr1 266254241 266254522 -15939142 + L1MC2 LINE L1 5995 6290 -54 23 0 0 0 chr1 266254522 266254545 -15939119 + AT_rich Low_complexity Low_complexity 1 23 0 1549 185 38 50 chr1 266254545 266254967 -15938697 + L1MC4 LINE L1 7623 8039 -3 265 301 21 11 chr1 266255331 266255424 -15938240 - MIR SINE MIR -108 154 61 584 281 92 17 chr1 266255520 266255758 -15937906 + MLT1J2 LTR MaLR 76 331 -119 2311 90 3 10 chr1 266255789 266256090 -15937574 - AluSq SINE Alu -14 299 1 438 300 75 12 chr1 266257080 266257249 -15936415 + MIR SINE MIR 16 192 -63 771 277 76 24 chr1 266257451 266257466 -15936198 + MIR SINE MIR 1 14 -248 954 226 0 17 chr1 266257466 266257647 -15936017 - MER45A DNA AcHobo 0 178 1 771 277 76 24 chr1 266257647 266257880 -15935784 + MIR SINE MIR 14 262 0 232 297 31 0 chr1 266257934 266257998 -15935666 + L2 LINE L2 3168 3233 -39 376 264 33 0 chr1 266258423 266258514 -15935150 - MIR SINE MIR -112 150 57 588 189 9 0 chr1 266259167 266259273 -15934391 + AluJb SINE Alu 1 107 -205 2106 124 7 3 chr1 266259329 266259628 -15934036 - AluSx SINE Alu -12 300 1 3413 144 71 67 chr1 266260216 266260655 -15933009 + L1MB3 LINE L1 5146 5582 -601 2447 146 57 0 chr1 266260655 266261079 -15932585 + L1PA16 LINE L1 5717 6165 -1 3413 144 71 67 chr1 266261079 266261357 -15932307 + L1MB3 LINE L1 5582 5868 -315 2019 116 16 26 chr1 266261357 266261660 -15932004 + AluSc SINE Alu 1 300 -9 3413 144 71 67 chr1 266261660 266261834 -15931830 + L1MB3 LINE L1 5868 6040 -143 1160 167 11 0 chr1 266261852 266262038 -15931626 - AluJb SINE Alu -54 258 71 804 117 0 0 chr1 266262060 266262180 -15931484 + L1PA16 LINE L1 5717 5836 -330 378 156 31 0 chr1 266262195 266262259 -15931405 - AluJb SINE Alu -236 66 1 935 291 20 10 chr1 266262334 266262636 -15931028 - L2 LINE L2 -862 2452 2148 1488 154 49 69 chr1 266263363 266263669 -15929995 + AluSx SINE Alu 13 312 0 24 0 0 0 chr1 266263951 266263975 -15929689 + AT_rich Low_complexity Low_complexity 1 24 0 1749 83 9 4 chr1 266264289 266264517 -15929147 - AluSq SINE Alu -84 229 1 912 123 141 0 chr1 266264519 266264689 -15928975 - L1MB2 LINE L1 -43 6128 5935 366 23 0 0 chr1 266264689 266264732 -15928932 + (TA)n Simple_repeat Simple_repeat 2 44 0 894 138 0 0 chr1 266264735 266264858 -15928806 - FLAM_C SINE Alu -20 123 1 1475 133 91 0 chr1 266264860 266265124 -15928540 - L1MB2 LINE L1 -239 5932 5645 589 271 48 12 chr1 266265205 266265371 -15928293 - MIR3 SINE MIR -16 192 21 838 193 56 20 chr1 266265734 266265931 -15927733 - MER63A DNA MER1_type 0 210 7 2287 94 7 0 chr1 266266937 266267235 -15926429 + AluY SINE Alu 1 300 -11 2496 150 36 2 chr1 266267801 266268215 -15925449 + MSTA LTR MaLR 1 428 0 206 95 24 0 chr1 266270347 266270389 -15923275 + (TTTTTA)n Simple_repeat Simple_repeat 4 46 0 2571 14 0 0 chr1 266270395 266270689 -15922975 - L1PA3 LINE L1 0 6155 5862 4052 6 0 0 chr1 266270689 266271161 -15922503 + L1PA3 LINE L1 5402 5873 -282 27 62 0 0 chr1 266271497 266271545 -15922119 + AT_rich Low_complexity Low_complexity 1 48 0 2165 110 0 0 chr1 266271827 266272109 -15921555 + AluY SINE Alu 15 296 -15 355 307 150 8 chr1 266272466 266272593 -15921071 - L2 LINE L2 0 3272 3128 338 205 146 20 chr1 266273312 266273463 -15920201 + L1ME4a LINE L1 5725 5894 -227 525 339 31 21 chr1 266273472 266273853 -15919811 + L1MCc LINE L1 25 409 -6014 1631 112 5 9 chr1 266274247 266274493 -15919171 + AluSg SINE Alu 62 306 0 468 288 7 7 chr1 266274673 266274826 -15918838 + L1MCc LINE L1 1167 1319 -5104 408 244 19 77 chr1 266275013 266275052 -15918612 + L1MCc LINE L1 1315 1355 -5381 1778 124 0 52 chr1 266275052 266275160 -15918504 + AluJb SINE Alu 38 150 -162 2425 77 3 0 chr1 266275160 266275457 -15918207 + AluY SINE Alu 1 298 -13 1778 124 0 52 chr1 266275457 266275638 -15918026 + AluJb SINE Alu 150 312 0 408 244 19 77 chr1 266275638 266275997 -15917667 + L1MCc LINE L1 1355 1849 -4887 296 274 131 6 chr1 266276001 266276153 -15917511 + L1MCc LINE L1 2021 2199 -4923 213 39 0 0 chr1 266276153 266276179 -15917485 + (GA)n Simple_repeat Simple_repeat 2 27 0 296 274 131 6 chr1 266276179 266276201 -15917463 + L1MCc LINE L1 2199 2217 -4905 308 229 60 0 chr1 266276203 266276286 -15917378 + L1MD3 LINE L1 7873 7960 -35 233 220 0 0 chr1 266276715 266276765 -15916899 - MLT1F-int LTR MaLR -715 656 607 2280 186 95 4 chr1 266276896 266277423 -15916241 - L1MB2 LINE L1 -2 6169 5595 275 336 22 44 chr1 266277475 266277649 -15916015 - MLT1F-int LTR MaLR -869 502 333 3946 100 44 10 chr1 266277649 266278237 -15915427 + MER4B LTR ERV1 1 608 -2 275 336 22 44 chr1 266278237 266278291 -15915373 - MLT1F-int LTR MaLR -1038 333 279 359 256 87 34 chr1 266278408 266278660 -15915004 - MLT1F LTR MaLR -11 531 219 198 351 9 35 chr1 266279797 266279911 -15913753 - L2 LINE L2 -456 2858 2748 196 289 19 0 chr1 266280087 266280139 -15913525 - L2 LINE L2 -665 2649 2597 1224 137 21 50 chr1 266280754 266280877 -15912787 + Tigger1 DNA MER2_type 2184 2298 -120 2303 82 10 0 chr1 266280877 266281170 -15912494 - AluY SINE Alu -15 296 1 1224 137 21 50 chr1 266281170 266281287 -15912377 + Tigger1 DNA MER2_type 2298 2417 -1 230 257 27 0 chr1 266281287 266281361 -15912303 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 378 180 213 27 chr1 266281682 266281832 -15911832 + L2 LINE L2 1656 1833 -1481 3858 165 13 47 chr1 266281848 266282697 -15910967 - L1MA6 LINE L1 0 6300 5481 459 0 0 0 chr1 266282699 266282750 -15910914 + (TTTTA)n Simple_repeat Simple_repeat 5 55 0 675 100 0 0 chr1 266282750 266282840 -15910824 - FLAM_C SINE Alu -24 119 30 910 119 0 0 chr1 266282751 266282869 -15910795 - AluJo/FLAM SINE Alu -184 118 1 14417 179 25 51 chr1 266282869 266283298 -15910366 - L1MA6 LINE L1 -33 7686 7247 1725 162 45 0 chr1 266283298 266283603 -15910061 - AluSx SINE Alu 0 321 5 14417 179 25 51 chr1 266283603 266283838 -15909826 - L1MA6 LINE L1 -472 7247 7007 1971 122 57 7 chr1 266283838 266284012 -15909652 - AluSx SINE Alu 0 312 115 248 77 26 0 chr1 266284012 266284051 -15909613 + (TA)n Simple_repeat Simple_repeat 2 41 0 1971 122 57 7 chr1 266284051 266284172 -15909492 - AluSx SINE Alu -197 115 2 14417 179 25 51 chr1 266284172 266284560 -15909104 - L1MA6 LINE L1 -712 7007 6610 2328 99 0 0 chr1 266284560 266284854 -15908810 - AluSc SINE Alu -15 294 1 14417 179 25 51 chr1 266284854 266284885 -15908779 - L1MA6 LINE L1 -1109 6610 6580 1968 162 0 7 chr1 266284885 266285188 -15908476 - AluSx SINE Alu -11 301 1 14417 179 25 51 chr1 266285188 266285706 -15907958 - L1MA6 LINE L1 -1139 6580 6050 1754 188 14 0 chr1 266285706 266285999 -15907665 - AluJb SINE Alu -15 297 1 14417 179 25 51 chr1 266285999 266286471 -15907193 - L1MA6 LINE L1 -1669 6050 5567 2311 113 0 0 chr1 266286471 266286771 -15906893 - AluSx SINE Alu -12 300 1 14417 179 25 51 chr1 266286771 266287352 -15906312 - L1MA6 LINE L1 -2152 5567 4972 10373 52 7 78 chr1 266287352 266288836 -15904828 - SVA Other Other 0 1386 7 14417 179 25 51 chr1 266288836 266289318 -15904346 - L1MA6 LINE L1 -2747 4972 4479 2357 100 0 0 chr1 266289318 266289617 -15904047 - AluSc SINE Alu -10 299 1 14417 179 25 51 chr1 266289617 266289841 -15903823 - L1MA6 LINE L1 -3240 4479 3584 682 100 0 0 chr1 266289840 266289930 -15903734 - L1 LINE L1 -2003 4143 4054 * 414 0 0 0 chr1 266289944 266289990 -15903674 + (CA)n Simple_repeat Simple_repeat 2 47 0 16487 166 17 39 chr1 266289991 266293669 -15899995 - L1P5 LINE L1 -372 6495 2738 1915 173 0 10 chr1 266293669 266293982 -15899682 - AluSx SINE Alu 0 312 3 2199 116 3 3 chr1 266293991 266294292 -15899372 - AluSq SINE Alu -12 301 1 16487 166 17 39 chr1 266294292 266294470 -15899194 - L1P5 LINE L1 -4137 2730 2550 1204 105 6 6 chr1 266294470 266294642 -15899022 + AluSg/x SINE Alu 122 293 -19 16487 166 17 39 chr1 266294642 266296126 -15897538 - L1P5 LINE L1 -4317 2550 1137 2201 119 0 13 chr1 266296126 266296429 -15897235 - AluSx SINE Alu -13 299 1 16487 166 17 39 chr1 266296429 266297540 -15896124 - L1P5 LINE L1 -5730 1137 3 23 33 0 0 chr1 266297618 266297648 -15896016 + AT_rich Low_complexity Low_complexity 1 30 0 5263 227 36 17 chr1 266297724 266299210 -15894454 - L1M4c LINE L1 -4516 2137 1124 2502 260 25 82 chr1 266299214 266299274 -15894390 + L2 LINE L2 2174 2236 -1077 1792 204 87 8 chr1 266299274 266299641 -15894023 + MSTD LTR MaLR 1 396 0 2502 260 25 82 chr1 266299641 266300786 -15892878 + L2 LINE L2 2236 3312 -1 28 0 0 0 chr1 266300868 266300896 -15892768 + AT_rich Low_complexity Low_complexity 1 28 0 34 93 0 0 chr1 266301146 266301243 -15892421 + AT_rich Low_complexity Low_complexity 1 97 0 1338 183 132 0 chr1 266301830 266302087 -15891577 - AluJo SINE Alu -21 291 1 354 106 38 0 chr1 266302333 266302395 -15891269 - MSTC LTR MaLR -354 72 3 978 212 65 34 chr1 266303202 266303495 -15890169 - L1MC4 LINE L1 -1 8041 7740 1901 158 3 3 chr1 266303509 266303807 -15889857 + AluJo SINE Alu 1 298 -14 1514 204 78 0 chr1 266303857 266304176 -15889488 + MER2 DNA MER2_type 2 345 0 274 208 0 0 chr1 266304197 266304245 -15889419 - L1MC4 LINE L1 -372 7670 7623 6362 125 18 50 chr1 266304272 266304322 -15889342 - L1MA5 LINE L1 -2 6298 6248 1962 128 3 26 chr1 266304322 266304627 -15889037 - AluSq SINE Alu -15 298 1 6362 125 18 50 chr1 266304627 266306383 -15887281 - L1MA5 LINE L1 -52 6248 4557 2709 204 114 61 chr1 266306381 266306853 -15886811 - L1MC4 LINE L1 -406 7636 7190 * 2236 117 0 0 chr1 266306853 266307152 -15886512 - AluSx SINE Alu -13 299 1 2709 204 114 61 chr1 266307152 266307567 -15886097 - L1MC4 LINE L1 -852 7190 6702 1132 256 47 64 chr1 266307583 266307696 -15885968 - L1MEc LINE L1 -5141 1255 1142 1845 171 7 10 chr1 266307696 266307861 -15885803 - AluJb SINE Alu -3 309 144 2246 110 10 0 chr1 266307861 266308171 -15885493 - AluSp SINE Alu 0 313 1 1845 171 7 10 chr1 266308171 266308314 -15885350 - AluJb SINE Alu -168 144 2 1132 256 47 64 chr1 266308314 266308536 -15885128 - L1MEc LINE L1 -5254 1142 930 2132 95 28 3 chr1 266308536 266308820 -15884844 + AluSg SINE Alu 1 291 -19 1132 256 47 64 chr1 266308820 266309033 -15884631 - L1MEc LINE L1 -5466 930 715 2142 127 13 0 chr1 266309191 266309499 -15884165 - AluSx SINE Alu 0 312 1 609 246 9 49 chr1 266309596 266309820 -15883844 + L1MC4 LINE L1 7827 8041 -1 2913 142 168 17 chr1 266309821 266310364 -15883300 + MER51A LTR ERV1 1 625 -9 2765 198 31 0 chr1 266310477 266310997 -15882667 + MST-int LTR MaLR 229 764 -887 4292 106 190 93 chr1 266310997 266312409 -15881255 + pTR5 LTR ERV1 743 2438 0 5030 122 62 32 chr1 266312415 266312760 -15880904 + THE1C-int LTR MaLR 705 1038 -542 2075 131 0 3 chr1 266312760 266313058 -15880606 + AluSx SINE Alu 1 297 -15 5030 122 62 32 chr1 266313058 266313562 -15880102 + THE1C-int LTR MaLR 1038 1580 0 1687 134 88 61 chr1 266313562 266313914 -15879750 + THE1C LTR MaLR 1 319 -36 2027 89 4 4 chr1 266313914 266314171 -15879493 - AluSx SINE Alu -21 291 35 1687 134 88 61 chr1 266314171 266314210 -15879454 + THE1C LTR MaLR 319 355 0 442 251 91 53 chr1 266314213 266314439 -15879225 + L1MC5 LINE L1 6277 6493 -1468 2274 148 29 0 chr1 266314439 266314790 -15878874 + MER46B DNA MER2_type 1 236 0 442 251 91 53 chr1 266314790 266316259 -15877405 + L1MC5 LINE L1 6493 7913 -48 455 221 38 30 chr1 266317419 266317550 -15876114 + MIR SINE MIR 109 240 -22 213 39 0 0 chr1 266317599 266317625 -15876039 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 249 83 0 0 chr1 266318553 266318589 -15875075 + (CCG)n Simple_repeat Simple_repeat 2 37 0 23 78 0 0 chr1 266318812 266318863 -15874801 + GC_rich Low_complexity Low_complexity 1 51 0 198 0 0 0 chr1 266320234 266320256 -15873408 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1315 201 37 30 chr1 266321595 266321894 -15871770 - AluJo SINE Alu -11 301 1 239 353 101 17 chr1 266322460 266322579 -15871085 - MIR SINE MIR -61 147 19 520 228 0 0 chr1 266323370 266323471 -15870193 + MLT1B LTR MaLR 243 343 -47 1058 161 99 5 chr1 266323805 266323997 -15869667 + AluJo SINE Alu 1 210 -102 28 0 0 0 chr1 266324019 266324047 -15869617 + AT_rich Low_complexity Low_complexity 1 28 0 831 173 23 8 chr1 266324176 266324309 -15869355 + AluJ SINE Alu 2 136 -176 2196 99 0 20 chr1 266324323 266324627 -15869037 + AluSc SINE Alu 1 298 -11 299 237 52 81 chr1 266324655 266324828 -15868836 + MIR SINE MIR 48 215 -47 181 235 118 0 chr1 266325050 266325101 -15868563 - MIR SINE MIR -132 130 74 363 136 61 30 chr1 266325187 266325253 -15868411 - AluJ/FRAM SINE Alu -5 297 230 1207 130 16 21 chr1 266325354 266325546 -15868118 + AluJ SINE Alu 113 303 -9 242 162 0 0 chr1 266325546 266325583 -15868081 - Alu SINE Alu -96 37 1 881 282 103 77 chr1 266326530 266326938 -15866726 - L2 LINE L2 0 3313 2888 1948 127 0 0 chr1 266326938 266327205 -15866459 + AluSx SINE Alu 34 300 -12 881 282 103 77 chr1 266327205 266327293 -15866371 - L2 LINE L2 -425 2888 2804 634 174 8 8 chr1 266327298 266327419 -15866245 - L2 LINE L2 -769 2545 2425 2217 100 0 47 chr1 266328231 266328551 -15865113 - AluSg SINE Alu -5 305 1 22 0 0 0 chr1 266328648 266328670 -15864994 + AT_rich Low_complexity Low_complexity 1 22 0 1834 147 110 26 chr1 266328835 266329181 -15864483 - THE1C LTR MaLR 0 375 1 1315 243 86 86 chr1 266329671 266330169 -15863495 - MLT1F1 LTR MaLR 0 567 45 425 324 107 14 chr1 266330304 266330520 -15863144 + MIR SINE MIR 23 258 -4 180 344 0 31 chr1 266330626 266330690 -15862974 + L2 LINE L2 2301 2362 -952 347 318 72 76 chr1 266330772 266331008 -15862656 - L2 LINE L2 0 3272 3038 937 56 0 32 chr1 266334088 266334213 -15859451 - AluY SINE Alu -16 295 175 23 0 0 0 chr1 266334215 266334238 -15859426 + AT_rich Low_complexity Low_complexity 1 23 0 258 254 183 37 chr1 266334589 266334771 -15858893 + MIR SINE MIR 14 212 -50 2323 79 6 22 chr1 266334791 266335107 -15858557 + AluY SINE Alu 1 311 0 25 75 0 0 chr1 266335485 266335538 -15858126 + AT_rich Low_complexity Low_complexity 1 53 0 869 143 0 0 chr1 266335645 266335771 -15857893 - FLAM_A SINE Alu -7 126 1 1991 118 36 26 chr1 266336475 266336779 -15856885 - AluSx SINE Alu -5 307 1 1618 227 47 0 chr1 266336854 266337281 -15856383 + L1ME2 LINE L1 2460 2906 -3240 2414 212 45 29 chr1 266337283 266337533 -15856131 + L1ME2 LINE L1 4793 5037 -1127 2277 114 0 0 chr1 266337533 266337830 -15855834 + AluSx SINE Alu 1 297 -15 2414 212 45 29 chr1 266337830 266338665 -15854999 + L1ME2 LINE L1 5037 5883 -281 324 274 107 66 chr1 266338666 266338863 -15854801 - L1ME LINE L1 -336 5785 5581 884 211 69 41 chr1 266338863 266339081 -15854583 - MIR SINE MIR -8 254 31 1862 168 3 7 chr1 266339190 266339500 -15854164 - AluJb SINE Alu -3 309 1 236 244 0 0 chr1 266339872 266339917 -15853747 + MER5A DNA MER1_type 77 121 -68 635 294 132 0 chr1 266340454 266340651 -15853013 + MIR SINE MIR 11 233 -29 583 245 100 45 chr1 266340868 266341068 -15852596 + MIR SINE MIR 37 247 -15 342 329 44 47 chr1 266341059 266341333 -15852331 + L2 LINE L2 2134 2406 -908 * 838 213 6 0 chr1 266341645 266341805 -15851859 - MER58A DNA MER1_type -24 200 40 763 182 0 23 chr1 266341806 266341938 -15851726 + FLAM_A SINE Alu 2 130 -12 254 195 0 0 chr1 266341943 266341984 -15851680 - MER58A DNA MER1_type -182 42 2 1060 189 47 0 chr1 266342651 266342842 -15850822 - MER58A DNA MER1_type -24 200 1 454 330 113 58 chr1 266343137 266343716 -15849948 - L2 LINE L2 -556 2758 2107 2343 88 0 10 chr1 266343716 266344021 -15849643 + AluSc SINE Alu 1 302 -7 454 330 113 58 chr1 266344021 266344368 -15849296 - L2 LINE L2 -1207 2107 1781 413 210 202 8 chr1 266344401 266344520 -15849144 - MER5A DNA MER1_type -31 158 17 1040 140 18 0 chr1 266344641 266344812 -15848852 + MER119 DNA MER1_type 160 333 -250 501 219 13 46 chr1 266344816 266344967 -15848697 + MER119 DNA MER1_type 434 579 -4 217 264 249 31 chr1 266344986 266345179 -15848485 - L2 LINE L2 -1518 1796 1562 315 281 267 20 chr1 266345182 266345328 -15848336 + MER5A DNA MER1_type 7 188 -1 227 360 170 39 chr1 266345474 266345579 -15848085 - L2 LINE L2 -1857 1457 1367 2434 64 0 35 chr1 266345579 266345891 -15847773 + AluY SINE Alu 1 301 -10 227 360 170 39 chr1 266345891 266346243 -15847421 - L2 LINE L2 -1947 1367 940 527 265 184 9 chr1 266346666 266346889 -15846775 - MIR SINE MIR 0 262 1 697 298 166 38 chr1 266346950 266347450 -15846214 - MLT1K LTR MaLR -24 564 1 398 299 279 15 chr1 266347529 266347726 -15845938 - MIR SINE MIR -3 259 11 2442 50 0 0 chr1 266347946 266348262 -15845402 - AluY SINE Alu 0 316 1 190 311 68 14 chr1 266348841 266348915 -15844749 + L3 LINE CR1 1499 1576 -1 768 144 8 8 chr1 266349018 266349133 -15844531 + AluJo SINE Alu 2 119 -183 378 0 0 0 chr1 266349133 266349175 -15844489 + (CA)n Simple_repeat Simple_repeat 1 42 0 1069 119 25 12 chr1 266349254 266349414 -15844250 + AluJo SINE Alu 135 296 -16 200 246 16 33 chr1 266349570 266349631 -15844033 - L2 LINE L2 0 3272 3213 515 270 90 15 chr1 266349691 266349891 -15843773 + MIR SINE MIR 28 242 -20 211 218 55 0 chr1 266349858 266349913 -15843751 + L2 LINE L2 3214 3271 -1 * 336 254 119 0 chr1 266349934 266350052 -15843612 - MIR SINE MIR -56 206 75 771 246 73 11 chr1 266350085 266350276 -15843388 - MIR SINE MIR -32 230 28 2042 117 0 13 chr1 266350281 266350601 -15843063 - AluSc SINE Alu 0 309 1 348 312 161 32 chr1 266350763 266351234 -15842430 - L3 LINE CR1 -356 1221 690 2222 111 0 0 chr1 266351313 266351629 -15842035 + AluSx SINE Alu 1 312 0 959 135 7 0 chr1 266351629 266351770 -15841894 + AluSg/x SINE Alu 134 275 -37 2554 49 0 7 chr1 266352609 266352916 -15840748 + AluY SINE Alu 1 305 -6 180 0 0 0 chr1 266353011 266353031 -15840633 + (TG)n Simple_repeat Simple_repeat 2 21 0 1559 190 14 11 chr1 266353116 266353395 -15840269 + AluJo SINE Alu 8 287 -25 236 330 220 0 chr1 266353555 266353664 -15840000 - L2 LINE L2 0 3272 3140 252 217 22 54 chr1 266353919 266354011 -15839653 + MIR SINE MIR 129 217 -45 1431 137 167 15 chr1 266354152 266354422 -15839242 + AluJb SINE Alu 1 311 -1 203 276 95 89 chr1 266354564 266354864 -15838800 + L2 LINE L2 2710 3060 -212 1033 245 73 38 chr1 266354949 266355321 -15838343 + L2 LINE L2 2295 2679 -635 849 245 30 0 chr1 266355322 266355522 -15838142 - MER58A DNA MER1_type 0 224 19 1114 271 126 42 chr1 266355568 266356057 -15837607 + L2 LINE L2 2780 3308 -5 207 354 39 24 chr1 266356398 266356525 -15837139 + MER5A DNA MER1_type 61 189 0 197 346 121 30 chr1 266356568 266356799 -15836865 + L2 LINE L2 2809 3060 -212 2448 90 0 0 chr1 266357181 266357492 -15836172 - AluSx SINE Alu -1 311 1 1747 164 47 0 chr1 266359061 266359335 -15834329 + AluJo SINE Alu 1 287 -25 311 269 150 47 chr1 266359343 266359744 -15833920 + L1ME LINE L1 5283 5724 -397 956 42 0 0 chr1 266359923 266360042 -15833622 - AluY SINE Alu -1 310 192 440 294 62 0 chr1 266360088 266360248 -15833416 + L2 LINE L2 2149 2318 -996 2962 158 87 12 chr1 266360401 266360964 -15832700 + MER6A DNA MER2_type 1 605 0 464 293 136 0 chr1 266361137 266361328 -15832336 + MIR SINE MIR 44 260 -2 744 158 0 23 chr1 266361673 266361806 -15831858 + FLAM_C SINE Alu 2 131 -2 516 270 198 20 chr1 266362684 266362929 -15830735 + L2 LINE L2 2374 2663 -651 431 332 182 0 chr1 266362929 266363143 -15830521 + MIR SINE MIR 2 254 -8 631 280 198 33 chr1 266363176 266363631 -15830033 + L2 LINE L2 2667 3226 -87 2790 167 72 0 chr1 266363631 266364141 -15829523 - MER44D DNA MER2_type 0 605 4 631 280 198 33 chr1 266364141 266364242 -15829422 + L2 LINE L2 3226 3309 -4 2130 112 20 0 chr1 266364917 266365211 -15828453 + AluSx SINE Alu 6 305 -7 1296 164 5 0 chr1 266365545 266365746 -15827918 + AluJo SINE Alu 95 296 -16 983 178 79 24 chr1 266366465 266366552 -15827112 + L1MA10 LINE L1 6067 6148 -186 372 43 0 0 chr1 266366552 266366598 -15827066 + (CA)n Simple_repeat Simple_repeat 2 47 0 983 178 79 24 chr1 266366598 266366763 -15826901 + L1MA10 LINE L1 6148 6333 -1 22 35 0 0 chr1 266367169 266367198 -15826466 + AT_rich Low_complexity Low_complexity 1 29 0 339 195 130 0 chr1 266367260 266367337 -15826327 - L1ME3A LINE L1 -17 6153 6067 266 320 102 61 chr1 266367936 266368133 -15825531 - L2 LINE L2 -23 3249 3045 274 349 48 16 chr1 266368517 266368643 -15825021 + L2 LINE L2 3137 3266 -6 231 226 0 19 chr1 266368740 266368793 -15824871 + (ATG)n Simple_repeat Simple_repeat 3 54 0 2218 105 7 0 chr1 266369078 266369372 -15824292 + AluSx SINE Alu 1 296 -16 214 245 0 0 chr1 266370140 266370189 -15823475 + GA-rich Low_complexity Low_complexity 5 53 0 22 35 0 0 chr1 266370423 266370452 -15823212 + AT_rich Low_complexity Low_complexity 1 29 0 206 261 34 68 chr1 266371373 266371461 -15822203 + MIR3 SINE MIR 8 92 -116 2022 119 0 29 chr1 266372055 266372366 -15821298 - AluSg SINE Alu -8 302 1 1447 145 9 0 chr1 266374607 266374828 -15818836 - AluSg/x SINE Alu -5 307 85 211 253 72 36 chr1 266377146 266377229 -15816435 + MIR SINE MIR 159 244 -18 281 172 138 35 chr1 266378039 266378126 -15815538 - MIR SINE MIR -113 149 54 2166 102 27 0 chr1 266378204 266378499 -15815165 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr1 266378507 266378536 -15815128 + AT_rich Low_complexity Low_complexity 1 29 0 339 262 0 35 chr1 266378542 266378683 -15814981 - HAL1 LINE L1 -100 2407 2272 1576 234 196 6 chr1 266378928 266379633 -15814031 - HAL1 LINE L1 -627 1880 1042 341 219 52 21 chr1 266379679 266379775 -15813889 - HAL1 LINE L1 -1597 910 812 2018 144 0 10 chr1 266379919 266380232 -15813432 - AluJb SINE Alu -2 310 1 504 0 0 0 chr1 266381157 266381213 -15812451 + (TA)n Simple_repeat Simple_repeat 1 56 0 2185 113 0 0 chr1 266381214 266381515 -15812149 - AluSx SINE Alu -11 301 1 1950 64 121 0 chr1 266382943 266383207 -15810457 - AluSc SINE Alu -2 297 2 2204 117 0 0 chr1 266383210 266383514 -15810150 - AluSx SINE Alu 0 306 3 2257 78 14 3 chr1 266383519 266383814 -15809850 - AluSq SINE Alu -15 298 1 2309 93 0 7 chr1 266383890 266384190 -15809474 + AluSx SINE Alu 2 299 -13 348 285 8 46 chr1 266384840 266384970 -15808694 + L2 LINE L2 2946 3070 -202 1237 217 286 30 chr1 266385318 266385852 -15807812 + L1ME2 LINE L1 5468 6138 -26 216 0 0 0 chr1 266389038 266389062 -15804602 + (T)n Simple_repeat Simple_repeat 1 24 0 189 378 92 17 chr1 266389549 266389668 -15803996 + L2 LINE L2 3122 3249 -23 1700 182 0 10 chr1 266390238 266390540 -15803124 - AluJb SINE Alu -13 299 1 1824 159 13 32 chr1 266390990 266391298 -15802366 + AluJb SINE Alu 1 302 -10 316 264 223 42 chr1 266391719 266391912 -15801752 - MIR SINE MIR 0 262 35 2084 131 0 13 chr1 266392604 266392918 -15800746 + AluJb SINE Alu 1 310 -2 1255 130 70 5 chr1 266392974 266393189 -15800475 + MER46A DNA MER2_type 4 232 -4 1310 219 155 76 chr1 266393275 266393313 -15800351 + L1MC4a LINE L1 5126 5160 -986 1972 147 3 0 chr1 266393313 266393605 -15800059 - AluSx SINE Alu -17 295 3 1310 219 155 76 chr1 266393605 266393819 -15799845 + L1MC4a LINE L1 5160 5356 -790 1677 100 4 70 chr1 266393819 266394089 -15799575 + AluSc SINE Alu 57 308 -1 1310 219 155 76 chr1 266394089 266394153 -15799511 + L1MC4a LINE L1 5356 5413 -733 1623 149 69 45 chr1 266394153 266394441 -15799223 + AluJo SINE Alu 1 295 -17 1310 219 155 76 chr1 266394441 266394840 -15798824 + L1MC4a LINE L1 5413 5353 -793 2165 91 25 44 chr1 266394840 266395159 -15798505 + AluSq SINE Alu 1 313 0 1310 219 155 76 chr1 266395159 266395215 -15798449 + L1MC4a LINE L1 5352 5402 -744 25 0 0 0 chr1 266395497 266395522 -15798142 + AT_rich Low_complexity Low_complexity 1 25 0 1353 210 76 10 chr1 266395734 266396024 -15797640 - AluJo SINE Alu -3 309 1 752 137 51 120 chr1 266396808 266396983 -15796681 - Tigger3(Golem) DNA MER2_type -1 3028 2866 1144 154 43 107 chr1 266397044 266397231 -15796433 - MER7A DNA MER2_type -2769 269 72 2308 83 3 10 chr1 266397231 266397532 -15796132 + AluY SINE Alu 1 299 -12 2144 118 16 3 chr1 266397541 266397847 -15795817 + AluSq SINE Alu 1 310 -3 1144 154 43 107 chr1 266397847 266397929 -15795735 - MER7A DNA MER2_type -2974 64 10 454 181 0 0 chr1 266398192 266398275 -15795389 + AluJ/FLAM SINE Alu 3 85 -227 2004 127 3 3 chr1 266398280 266398563 -15795101 - AluSx SINE Alu -29 283 1 504 224 140 26 chr1 266398566 266398740 -15794924 - L1M4 LINE L1 -3624 3941 3788 1224 145 25 58 chr1 266398740 266398981 -15794683 + MER46A DNA MER2_type 3 235 -1 504 224 140 26 chr1 266398981 266399147 -15794517 - L1M4 LINE L1 -3777 3788 3558 465 205 79 0 chr1 266399250 266399377 -15794287 - L1MB2 LINE L1 -7 6164 6028 964 80 8 0 chr1 266399451 266399576 -15794088 - AluSp/q SINE Alu -12 301 176 263 321 64 23 chr1 266399725 266399889 -15793775 + MIR SINE MIR 41 211 -51 2324 74 0 17 chr1 266399889 266400187 -15793477 - AluY SINE Alu -18 293 1 205 171 0 24 chr1 266402832 266402873 -15790791 + (CCG)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr1 266404742 266404768 -15788896 + AT_rich Low_complexity Low_complexity 1 26 0 1514 151 0 0 chr1 266405004 266405229 -15788435 - AluJb SINE Alu -6 306 82 2344 94 0 0 chr1 266407863 266408160 -15785504 - AluSx SINE Alu -15 297 1 306 307 110 51 chr1 266408715 266409125 -15784539 - L1ME4a LINE L1 -175 5946 5513 2061 120 0 7 chr1 266409178 266409469 -15784195 + AluJo SINE Alu 2 290 -22 1036 147 165 96 chr1 266409559 266409831 -15783833 - AluJb SINE Alu -10 292 2 365 299 111 62 chr1 266409891 266410232 -15783432 - L1ME4a LINE L1 -804 5342 4985 1668 92 163 0 chr1 266410240 266410491 -15783173 + AluSx SINE Alu 1 292 -20 1707 169 66 3 chr1 266410704 266411024 -15782640 + MER2 DNA MER2_type 4 343 -1 435 226 0 0 chr1 266411152 266411245 -15782419 - L1ME4a LINE L1 -1537 4609 4517 413 293 137 49 chr1 266411247 266411963 -15781701 - L1ME4a LINE L1 -1674 4472 3694 510 264 91 41 chr1 266412440 266412552 -15781112 - MIR SINE MIR -12 250 145 1964 148 3 0 chr1 266412552 266412855 -15780809 + AluSx SINE Alu 1 304 -8 510 264 91 41 chr1 266412855 266412962 -15780702 - MIR SINE MIR -117 145 20 189 385 42 0 chr1 266413250 266413346 -15780318 - MIR SINE MIR -162 100 1 471 219 16 65 chr1 266413923 266414046 -15779618 + L1MC4a LINE L1 5545 5661 -2147 1013 209 43 0 chr1 266414184 266414419 -15779245 + L1MC4a LINE L1 5701 5945 -1863 386 226 19 44 chr1 266414679 266414838 -15778826 - L1MC5 LINE L1 -35 7926 7772 315 242 89 24 chr1 266414849 266414973 -15778691 - L1ME2 LINE L1 -10 6154 6023 804 201 55 30 chr1 266415271 266415470 -15778194 - MER3 DNA MER1_type -1 208 5 264 254 51 53 chr1 266415754 266415878 -15777786 + L1MDa LINE L1 11 568 -5962 1908 241 45 69 chr1 266415878 266416560 -15777104 + MER21B LTR ERV1 11 676 -187 3401 157 25 7 chr1 266416561 266417153 -15776511 - MER50 LTR ERV1 -23 711 109 284 174 0 72 chr1 266417195 266417264 -15776400 + Alu SINE Alu 239 302 0 2050 132 0 0 chr1 266417422 266417703 -15775961 - AluSx SINE Alu -23 289 9 1862 150 89 64 chr1 266417739 266417912 -15775752 + L1MB4 LINE L1 5688 5855 -325 2049 128 30 7 chr1 266417912 266418217 -15775447 + AluSx SINE Alu 1 312 0 1862 150 89 64 chr1 266418217 266418326 -15775338 + L1MB4 LINE L1 5855 5960 -220 2534 53 0 7 chr1 266418326 266418626 -15775038 + AluY SINE Alu 1 298 -13 1862 150 89 64 chr1 266418626 266418823 -15774841 + L1MB4 LINE L1 5960 6180 0 865 146 0 8 chr1 266418827 266418957 -15774707 + AluJb SINE Alu 1 129 -183 2419 111 3 3 chr1 266419013 266419365 -15774299 + L1PA16 LINE L1 5806 6157 -9 629 317 7 41 chr1 266419428 266419531 -15774133 + L1MDa LINE L1 2402 2507 -4033 2265 93 10 3 chr1 266419531 266419832 -15773832 + AluSq SINE Alu 1 303 -10 629 317 7 41 chr1 266419832 266420147 -15773517 + L1MDa LINE L1 2507 2765 -3775 724 182 0 23 chr1 266420172 266420304 -15773360 + FLAM_A SINE Alu 1 129 -4 315 263 11 0 chr1 266420339 266420434 -15773230 + L1MDa LINE L1 2906 3001 -3539 1028 134 0 13 chr1 266420447 266420596 -15773068 - AluJo SINE Alu -161 151 5 2943 162 26 24 chr1 266420601 266421145 -15772519 + Tigger3(Golem) DNA MER2_type 2485 3029 0 448 265 0 0 chr1 266421959 266422061 -15771603 - Tigger2 DNA MER2_type -10 2708 2607 3258 141 52 17 chr1 266422074 266422613 -15771051 - LTR12 LTR ERV1 -156 558 1 832 190 31 45 chr1 266422692 266422981 -15770683 - pTR5 LTR ERV1 -1410 1028 744 1722 74 5 201 chr1 266422981 266423442 -15770222 - Tigger2 DNA MER2_type -97 2621 1 2467 77 0 0 chr1 266423557 266423857 -15769807 + AluSc SINE Alu 1 300 -9 814 123 15 15 chr1 266423990 266424120 -15769544 - FLAM_C SINE Alu 0 133 4 500 238 61 12 chr1 266424732 266424896 -15768768 + L1 LINE L1 4990 5161 -985 716 162 0 0 chr1 266424896 266425001 -15768663 + FRAM SINE Alu 42 146 -30 21 36 0 0 chr1 266425296 266425324 -15768340 + AT_rich Low_complexity Low_complexity 1 28 0 267 247 25 0 chr1 266426188 266426269 -15767395 - MER5A DNA MER1_type -80 109 27 1997 141 0 3 chr1 266426903 266427202 -15766462 + AluSx SINE Alu 1 298 -14 919 183 30 6 chr1 266427287 266427456 -15766208 + AluJb SINE Alu 1 173 -139 433 243 162 5 chr1 266427604 266427814 -15765850 + L2 LINE L2 2813 3055 -258 183 143 48 24 chr1 266427882 266427924 -15765740 + L2 LINE L2 3171 3213 -100 399 319 115 0 chr1 266428062 266428219 -15765445 + MIR SINE MIR 84 258 -4 198 71 0 0 chr1 266429138 266429166 -15764498 + (TATG)n Simple_repeat Simple_repeat 1 28 0 2191 77 0 14 chr1 266429166 266429451 -15764213 - AluSx SINE Alu -31 281 1 2131 112 27 0 chr1 266430078 266430372 -15763292 + AluSx SINE Alu 1 302 -10 640 144 0 0 chr1 266430373 266430470 -15763194 - FLAM_A SINE Alu -26 116 20 190 179 26 0 chr1 266430492 266430531 -15763133 - L2 LINE L2 -12 3301 3262 182 200 0 86 chr1 266430499 266430569 -15763095 - MIR SINE MIR -14 248 185 * 536 230 17 32 chr1 266430629 266430852 -15762812 + MLT2C1 LTR ERVL 140 397 0 1366 167 22 85 chr1 266430920 266431062 -15762602 - AluJo SINE Alu -15 297 184 1884 110 0 0 chr1 266431062 266431298 -15762366 + AluSx SINE Alu 1 236 -76 1366 167 22 85 chr1 266431298 266431472 -15762192 - AluJo SINE Alu -128 184 1 2246 79 7 0 chr1 266433567 266433847 -15759817 + AluSp SINE Alu 1 282 -31 306 0 0 0 chr1 266433847 266433881 -15759783 + (CA)n Simple_repeat Simple_repeat 1 34 0 2067 95 6 52 chr1 266435915 266436242 -15757422 + AluSp SINE Alu 1 312 -1 912 219 4 43 chr1 266444575 266444843 -15748821 + MER44D DNA MER2_type 2 327 -378 1141 206 3 66 chr1 266444844 266444993 -15748671 + AluJb SINE Alu 1 122 -180 2077 111 0 3 chr1 266444993 266445282 -15748382 + AluSg SINE Alu 1 288 -22 1141 206 3 66 chr1 266445282 266445453 -15748211 + AluJb SINE Alu 122 302 0 949 208 71 0 chr1 266445454 266445666 -15747998 + MER44D DNA MER2_type 322 603 -2 1918 110 4 4 chr1 266445816 266446089 -15747575 + AluSx SINE Alu 32 304 -8 1705 81 5 0 chr1 266446278 266446499 -15747165 - AluSc SINE Alu -31 278 57 698 214 154 0 chr1 266447238 266447420 -15746244 - MER2 DNA MER2_type -135 210 1 689 224 167 0 chr1 266448440 266448614 -15745050 - MER20 DNA MER1_type -16 203 1 420 143 0 26 chr1 266449166 266449243 -15744421 + MLT1A1 LTR MaLR 1 75 -290 1593 73 0 0 chr1 266449253 266449457 -15744207 + AluY SINE Alu 3 206 -105 23 0 0 0 chr1 266449814 266449837 -15743827 + AT_rich Low_complexity Low_complexity 1 23 0 2104 106 7 10 chr1 266449862 266450165 -15743499 - AluSc SINE Alu -7 302 1 4517 159 104 30 chr1 266450227 266451190 -15742474 + pTR5 LTR ERV1 743 1999 -439 355 290 16 0 chr1 266451190 266451314 -15742350 + LTR30 LTR ERV1 517 642 -80 2349 112 0 0 chr1 266451314 266451644 -15742020 + pTR5 LTR ERV1 66 395 -2043 1410 253 25 48 chr1 266451744 266452183 -15741481 - MER21-int LTR ERV1 -1748 2443 2015 1086 177 5 33 chr1 266452302 266452517 -15741147 + MER2 DNA MER2_type 1 209 -136 1402 139 4 13 chr1 266452543 266452773 -15740891 - AluSq SINE Alu -85 228 1 24 32 0 0 chr1 266452778 266452809 -15740855 + AT_rich Low_complexity Low_complexity 1 31 0 1785 120 29 0 chr1 266453092 266453404 -15740260 - AluSx SINE Alu 0 320 1 883 245 20 5 chr1 266453599 266453799 -15739865 - MER21-int LTR ERV1 -2316 1875 1673 1097 250 32 81 chr1 266453928 266454274 -15739390 - MER21-int LTR ERV1 -2308 4450 4088 2468 74 0 0 chr1 266454274 266454586 -15739078 - AluSx SINE Alu 0 312 1 1833 142 7 10 chr1 266454594 266454896 -15738768 - AluSx SINE Alu -11 301 1 1097 250 32 81 chr1 266454896 266455123 -15738541 - MER21-int LTR ERV1 -2677 4081 1213 1450 199 8 54 chr1 266455191 266455224 -15738440 + MER41B LTR ERV1 157 190 -445 2259 56 31 0 chr1 266455224 266455512 -15738152 + AluY SINE Alu 1 297 -14 1450 199 8 54 chr1 266455512 266455830 -15737834 + MER41B LTR ERV1 190 492 -143 555 107 0 0 chr1 266455831 266455906 -15737758 + AluSp/q SINE Alu 228 302 -11 1678 160 0 10 chr1 266455960 266456288 -15737376 + AluJb SINE Alu 1 325 0 1665 155 13 42 chr1 266456742 266457052 -15736612 + AluSg SINE Alu 1 301 -9 24 0 0 0 chr1 266457052 266457076 -15736588 + AT_rich Low_complexity Low_complexity 1 24 0 1552 181 10 10 chr1 266457302 266457601 -15736063 - AluJo SINE Alu -5 307 9 343 297 169 38 chr1 266457718 266457954 -15735710 + HAL1 LINE L1 190 456 -2051 462 275 83 54 chr1 266457998 266458274 -15735390 + HAL1 LINE L1 609 892 -1615 1892 48 0 0 chr1 266458317 266458545 -15735119 + AluY SINE Alu 69 296 -15 366 222 0 49 chr1 266458739 266458820 -15734844 + 5S rRNA rRNA 1 77 -44 765 216 36 80 chr1 266458840 266458880 -15734784 - MIR SINE MIR -23 239 199 1377 171 41 120 chr1 266458880 266459272 -15734392 + MLT1A1 LTR MaLR 2 362 -3 765 216 36 80 chr1 266459272 266459481 -15734183 - MIR SINE MIR -63 199 1 1368 81 0 5 chr1 266459523 266459708 -15733956 - AluSg/x SINE Alu -7 303 120 1621 131 0 4 chr1 266459708 266459945 -15733719 - AluSq SINE Alu -77 236 1 1859 154 7 0 chr1 266460028 266460320 -15733344 - AluJb SINE Alu -18 294 1 2077 101 27 3 chr1 266460513 266460811 -15732853 - AluSc SINE Alu -4 305 1 279 111 0 0 chr1 266461485 266461521 -15732143 + Alu SINE Alu 1 36 -266 1067 208 40 71 chr1 266461527 266461878 -15731786 + MLT1A2 LTR MaLR 31 370 -4 215 203 16 0 chr1 266464398 266464462 -15729202 + (TATG)n Simple_repeat Simple_repeat 4 68 0 2439 66 0 0 chr1 266466717 266467019 -15726645 + AluY SINE Alu 1 302 -9 2261 76 0 22 chr1 266467265 266467579 -15726085 - AluSc SINE Alu -2 307 1 2148 98 3 0 chr1 266468151 266468447 -15725217 - AluSg SINE Alu -13 297 1 206 170 84 17 chr1 266468692 266468751 -15724913 + MER5A DNA MER1_type 52 125 -64 250 291 89 0 chr1 266469020 266469099 -15724565 + MIR3 SINE MIR 107 192 -16 183 200 32 160 chr1 266469111 266469236 -15724428 - L3 LINE CR1 -315 1262 1154 200 97 32 0 chr1 266469931 266469962 -15723702 + (CA)n Simple_repeat Simple_repeat 2 33 0 200 297 44 33 chr1 266470753 266470844 -15722820 + L2 LINE L2 2563 2654 -660 195 304 188 0 chr1 266471189 266471258 -15722406 + L2 LINE L2 3169 3250 -22 2382 71 0 0 chr1 266471347 266471642 -15722022 - AluSg SINE Alu -15 295 1 950 136 0 0 chr1 266471642 266471774 -15721890 - FLAM_A SINE Alu -1 132 1 2316 76 3 3 chr1 266471944 266472247 -15721417 - AluY SINE Alu -8 303 1 842 141 0 15 chr1 266475062 266475197 -15718467 - FLAM_C SINE Alu 0 133 1 235 227 0 0 chr1 266475814 266475858 -15717806 + L1ME LINE L1 5619 5662 -459 2247 154 30 27 chr1 266475968 266476706 -15716958 + L1MB3 LINE L1 4948 5682 -501 2242 144 27 0 chr1 266476711 266477078 -15716586 + L1MB3 LINE L1 5805 6181 -2 337 292 11 11 chr1 266477914 266478003 -15715661 - MIR SINE MIR -172 90 2 742 222 49 60 chr1 266478518 266479309 -15714355 + L1MD3 LINE L1 7151 7968 -27 635 92 0 92 chr1 266480560 266480602 -15713062 - L1MB5 LINE L1 0 6174 6130 2417 60 3 0 chr1 266480602 266480900 -15712764 - AluSp SINE Alu -14 299 1 635 92 0 92 chr1 266480900 266480977 -15712687 - L1MB5 LINE L1 -44 6130 6066 2267 73 3 22 chr1 266481330 266481644 -15712020 + AluY SINE Alu 1 308 -3 444 106 0 0 chr1 266481650 266481716 -15711948 - L1MB2 LINE L1 -15 6156 6091 308 331 30 8 chr1 266483251 266483384 -15710280 + L2 LINE L2 2617 2752 -562 * 1023 304 93 102 chr1 266483367 266483481 -15710183 - L2 LINE L2 -676 2638 2524 2458 65 0 0 chr1 266483481 266483789 -15709875 + AluY SINE Alu 1 308 -3 1023 304 93 102 chr1 266483789 266484527 -15709137 - L2 LINE L2 -790 2524 1780 1688 141 13 44 chr1 266484527 266484825 -15708839 + AluJo SINE Alu 1 289 -23 1023 304 93 102 chr1 266484825 266485209 -15708455 - L2 LINE L2 -1534 1780 1394 1986 125 3 3 chr1 266485209 266485506 -15708158 + AluSx SINE Alu 1 297 -15 2255 76 0 23 chr1 266485514 266485816 -15707848 + AluY SINE Alu 1 295 -16 1023 304 93 102 chr1 266485816 266486044 -15707620 - L2 LINE L2 -1927 1387 1177 488 234 29 58 chr1 266486097 266486150 -15707514 + MER5B DNA MER1_type 9 62 -116 1542 62 6 0 chr1 266486150 266486329 -15707335 + AluSq SINE Alu 1 180 -133 488 234 29 58 chr1 266486329 266486412 -15707252 + MER5B DNA MER1_type 62 141 -37 * 595 165 149 8 chr1 266486404 266486525 -15707139 - L2 LINE L2 0 3313 3176 2352 74 0 3 chr1 266486993 266487302 -15706362 + AluY SINE Alu 1 308 0 580 329 206 8 chr1 266487827 266488328 -15705336 + L2 LINE L2 2291 2890 -424 281 143 0 36 chr1 266488352 266488408 -15705256 - MER5B DNA MER1_type -124 54 1 573 208 113 6 chr1 266488545 266488704 -15704960 - MER5B DNA MER1_type 0 178 3 948 193 26 36 chr1 266489813 266490005 -15703659 - AluJo SINE Alu -13 299 110 619 146 0 124 chr1 266490010 266490147 -15703517 + FLAM_C SINE Alu 2 121 -22 266 0 29 0 chr1 266490147 266490181 -15703483 + (TAA)n Simple_repeat Simple_repeat 2 36 0 723 123 9 0 chr1 266490190 266490296 -15703368 - AluJo SINE Alu -204 108 2 180 337 32 0 chr1 266490308 266490403 -15703261 + L2 LINE L2 1821 1918 -1396 1781 153 66 27 chr1 266491243 266491577 -15702087 - MER7A DNA MER2_type 0 346 2 2131 151 39 17 chr1 266491613 266491681 -15701983 + Tigger2 DNA MER2_type 2 67 -2651 828 112 8 30 chr1 266491681 266491815 -15701849 - AluJo SINE Alu -171 131 1 2131 151 39 17 chr1 266491815 266492197 -15701467 + Tigger2 DNA MER2_type 67 2718 0 400 180 79 0 chr1 266492522 266492611 -15701053 - L2 LINE L2 -3 3269 3174 2446 55 10 0 chr1 266493085 266493374 -15700290 - AluY SINE Alu -19 292 1 696 236 0 45 chr1 266493379 266493557 -15700107 - MER5B DNA MER1_type 0 178 9 867 257 80 81 chr1 266493783 266493953 -15699711 - L2 LINE L2 0 3313 3144 1482 192 60 62 chr1 266493953 266494281 -15699383 + MER63B DNA MER1_type 1 329 -733 2476 68 3 0 chr1 266494281 266494574 -15699090 - AluSp SINE Alu -19 294 1 1482 192 60 62 chr1 266494574 266494682 -15698982 + MER63B DNA MER1_type 329 436 0 867 257 80 81 chr1 266494682 266494716 -15698948 - L2 LINE L2 -169 3144 3111 1584 193 10 26 chr1 266494716 266495027 -15698637 + AluJo SINE Alu 5 310 -2 867 257 80 81 chr1 266495027 266495399 -15698265 - L2 LINE L2 -202 3111 2748 218 271 139 35 chr1 266495439 266495583 -15698081 + L2 LINE L2 2150 2308 -1006 305 325 30 18 chr1 266495658 266495827 -15697837 + L2 LINE L2 2328 2498 -816 1057 179 0 0 chr1 266496051 266496219 -15697445 + FRAM SINE Alu 1 162 -14 2324 103 3 13 chr1 266496221 266496533 -15697131 + AluSx SINE Alu 1 309 -3 259 247 177 59 chr1 266496555 266496741 -15696923 + MARNA DNA Mariner 362 569 -17 351 67 0 0 chr1 266497586 266497631 -15696033 + AluY SINE Alu 110 154 -147 * 401 227 53 15 chr1 266497619 266497751 -15695913 + LTR16A LTR ERVL 273 409 -41 2103 117 0 19 chr1 266497978 266498286 -15695378 + AluSx SINE Alu 8 309 -3 250 253 177 59 chr1 266498308 266498494 -15695170 + MARNA DNA Mariner 362 569 -17 257 184 61 0 chr1 266498528 266498577 -15695087 + AluY SINE Alu 103 154 -147 * 489 225 28 21 chr1 266498565 266498707 -15694957 + LTR16A LTR ERVL 273 415 -35 2297 85 3 7 chr1 266499063 266499400 -15694264 - AluSq SINE Alu 0 313 1 2143 119 7 0 chr1 266499401 266499695 -15693969 - AluJb SINE Alu -16 296 1 394 299 51 13 chr1 266501365 266501522 -15692142 - MIR SINE MIR -40 222 60 668 198 192 0 chr1 266502116 266502298 -15691366 + MER20 DNA MER1_type 3 219 0 411 252 19 0 chr1 266505179 266505338 -15688326 + GA-rich Low_complexity Low_complexity 1 162 0 699 171 8 0 chr1 266506540 266506657 -15687007 - FLAM_C SINE Alu -15 118 1 2616 58 0 10 chr1 266506672 266506980 -15686684 - AluY SINE Alu -6 305 1 1853 166 0 13 chr1 266507729 266508030 -15685634 - AluJb SINE Alu -15 297 1 586 176 64 0 chr1 266508748 266508873 -15684791 - AluJo SINE Alu -18 294 162 1864 213 36 86 chr1 266508875 266509518 -15684146 + LTR6A LTR ERV1 4 564 0 999 142 19 12 chr1 266509518 266509680 -15683984 - AluJo SINE Alu -146 166 4 183 379 21 32 chr1 266510309 266510404 -15683260 + MIR SINE MIR 45 138 -70 180 0 0 0 chr1 266510423 266510443 -15683221 + (TA)n Simple_repeat Simple_repeat 2 21 0 1467 152 117 30 chr1 266510443 266510707 -15682957 - AluJo SINE Alu -15 297 11 441 276 112 0 chr1 266510715 266510849 -15682815 + MIR SINE MIR 113 261 -1 207 186 0 0 chr1 266512668 266512711 -15680953 + (CA)n Simple_repeat Simple_repeat 1 43 0 2061 132 3 20 chr1 266512865 266513001 -15680663 + AluSx SINE Alu 3 140 -172 2438 81 0 3 chr1 266513001 266513299 -15680365 + AluY SINE Alu 1 297 -14 2061 132 3 20 chr1 266513299 266513465 -15680199 + AluSx SINE Alu 140 300 -12 251 308 0 0 chr1 266513492 266513557 -15680107 - MIR SINE MIR -119 143 79 525 143 133 9 chr1 266514928 266515014 -15678650 + FLAM_A SINE Alu 23 126 -185 2040 121 3 48 chr1 266515014 266515329 -15678335 - AluSx SINE Alu -11 301 1 525 143 133 9 chr1 266515329 266515347 -15678317 + FLAM_A SINE Alu 126 140 -171 2250 144 0 0 chr1 266515719 266516031 -15677633 - AluSx SINE Alu 0 312 1 232 268 0 56 chr1 266517004 266517075 -15676589 - L2 LINE L2 -8 3264 3198 318 273 49 16 chr1 266519010 266519157 -15674507 + L2 LINE L2 2855 3010 -303 555 166 6 18 chr1 266519185 266519354 -15674310 + CT-rich Low_complexity Low_complexity 1 167 0 287 160 13 0 chr1 266519394 266519469 -15674195 + CT-rich Low_complexity Low_complexity 2 77 0 511 299 76 0 chr1 266519514 266519698 -15673966 + L2 LINE L2 3116 3313 0 301 280 100 1 chr1 266519714 266519856 -15673808 - MIR3 SINE MIR -67 141 2 188 280 40 0 chr1 266521035 266521085 -15672579 - MIR SINE MIR -116 92 41 207 380 0 0 chr1 266522196 266522275 -15671389 - L2 LINE L2 0 3313 3235 419 299 49 25 chr1 266522500 266522744 -15670920 + L1ME4a LINE L1 5670 5919 -202 186 43 0 0 chr1 266522749 266522772 -15670892 + (TG)n Simple_repeat Simple_repeat 2 24 0 2247 105 7 0 chr1 266522788 266523082 -15670582 + AluSp SINE Alu 1 296 -17 191 353 24 24 chr1 266523217 266523302 -15670362 + L2 LINE L2 3186 3270 -2 270 81 0 0 chr1 266523585 266523622 -15670042 + (TTCTCC)n Simple_repeat Simple_repeat 1 37 0 2389 101 3 0 chr1 266523622 266523930 -15669734 - AluSp SINE Alu -4 309 1 235 321 0 0 chr1 266524371 266524424 -15669240 - Zaphod DNA AcHobo 0 4031 3979 461 286 183 8 chr1 266524457 266524709 -15668955 - MER115 DNA AcHobo -309 384 89 1543 135 142 19 chr1 266524884 266525144 -15668520 - AluJb SINE Alu -16 296 5 648 252 179 15 chr1 266525241 266525515 -15668149 + L2 LINE L2 2995 3313 0 687 203 68 0 chr1 266525542 266525719 -15667945 + MER5A DNA MER1_type 1 189 0 584 262 73 21 chr1 266526051 266526242 -15667422 + MER3 DNA MER1_type 9 209 0 1104 148 5 21 chr1 266526256 266526445 -15667219 + LTR44 LTR ERV1 1 186 -333 607 184 9 0 chr1 266526446 266526555 -15667109 + FLAM_A SINE Alu 1 110 -32 1205 165 0 11 chr1 266526595 266526783 -15666881 + AluJo SINE Alu 107 292 -20 1702 160 17 0 chr1 266526789 266527082 -15666582 + LTR44 LTR ERV1 215 512 -7 397 294 21 0 chr1 266527311 266527454 -15666210 - MLT1A2 LTR MaLR -4 386 241 2203 149 43 24 chr1 266527468 266527890 -15665774 + MSTB1 LTR MaLR 1 430 -2 432 51 0 0 chr1 266527923 266527982 -15665682 + (GA)n Simple_repeat Simple_repeat 1 59 0 788 183 46 0 chr1 266527999 266528152 -15665512 - MLT1A2 LTR MaLR -214 160 1 199 294 153 0 chr1 266528181 266528266 -15665398 + L2 LINE L2 3215 3312 -1 1255 125 0 116 chr1 266528999 266529231 -15664433 + AluJo SINE Alu 6 210 -102 270 106 0 0 chr1 266529248 266529295 -15664369 + (GA)n Simple_repeat Simple_repeat 2 48 0 854 165 0 0 chr1 266529314 266529447 -15664217 - FRAM SINE Alu -44 132 1 228 246 0 18 chr1 266529561 266529618 -15664046 + L2 LINE L2 3258 3313 0 2045 147 0 3 chr1 266530109 266530401 -15663263 + AluJo SINE Alu 1 291 -21 2229 173 37 53 chr1 266531370 266531621 -15662043 - MLT1D LTR MaLR -3 502 262 1655 166 89 6 chr1 266531621 266531958 -15661706 + MLT1A1 LTR MaLR 1 365 0 2229 173 37 53 chr1 266531958 266532214 -15661450 - MLT1D LTR MaLR -243 262 3 199 336 70 16 chr1 266532272 266532400 -15661264 + L2 LINE L2 3173 3307 -6 681 251 138 9 chr1 266532670 266532901 -15660763 - MIR SINE MIR 0 262 2 1668 170 161 17 chr1 266534709 266535114 -15658550 + MLT1C LTR MaLR 5 467 0 285 320 166 11 chr1 266536522 266536703 -15656961 + MIR SINE MIR 21 229 -33 955 262 44 63 chr1 266536928 266537401 -15656263 + MER101 LTR ERV1 11 474 0 754 242 111 0 chr1 266537560 266537750 -15655914 + MIR SINE MIR 31 241 -21 1393 192 0 52 chr1 266537866 266538157 -15655507 - AluJo SINE Alu -36 276 1 226 291 13 13 chr1 266538157 266538236 -15655428 + LTR67 LTR ERVL 476 554 -3 215 247 78 72 chr1 266538835 266539001 -15654663 + L2 LINE L2 2924 3090 -182 566 171 9 27 chr1 266539055 266539166 -15654498 - FLAM_A SINE Alu -6 136 28 902 262 39 51 chr1 266539961 266540210 -15653454 - MLT1I LTR MaLR 0 409 159 2035 112 0 0 chr1 266540210 266540487 -15653177 + AluSc SINE Alu 1 277 -32 273 29 0 0 chr1 266540487 266540521 -15653143 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 902 262 39 51 chr1 266540521 266540625 -15653039 - MLT1I LTR MaLR -248 161 59 200 250 250 7 chr1 266540668 266540816 -15652848 + MIR SINE MIR 23 206 -56 405 267 58 29 chr1 266541104 266541344 -15652320 + L1ME4a LINE L1 5636 5882 -239 1041 39 78 0 chr1 266541813 266541942 -15651722 - MER85 DNA T2_type 0 139 1 1996 181 78 34 chr1 266541986 266542433 -15651231 + MLT1C LTR MaLR 1 467 0 200 306 32 0 chr1 266542652 266542714 -15650950 - MIR SINE MIR -120 142 79 186 270 48 0 chr1 266543033 266543096 -15650568 - MIR SINE MIR -14 248 183 311 350 50 8 chr1 266543574 266543694 -15649970 - L2 LINE L2 0 3272 3148 1977 187 71 20 chr1 266545680 266546118 -15647546 + LTR40b LTR ERVL 1 460 -2 557 222 16 95 chr1 266546906 266547008 -15646656 + L1MEc LINE L1 1161 1270 -5337 1596 186 6 28 chr1 266547008 266547326 -15646338 + AluJo SINE Alu 1 311 -1 557 222 16 95 chr1 266547326 266547561 -15646103 + L1MEc LINE L1 1270 1602 -5005 772 315 53 30 chr1 266547561 266548034 -15645630 + L2 LINE L2 2553 3042 -271 648 222 0 0 chr1 266548091 266548208 -15645456 - FLAM_C SINE Alu -25 118 2 280 321 88 56 chr1 266548210 266548425 -15645239 + L2 LINE L2 3092 3313 0 1385 199 31 3 chr1 266549373 266549659 -15644005 - AluJo SINE Alu -16 296 3 299 207 134 12 chr1 266549686 266549768 -15643896 + MIR3 SINE MIR 76 167 -41 442 275 168 7 chr1 266550419 266550568 -15643096 - MER5A DNA MER1_type -7 182 10 887 188 104 45 chr1 266550600 266550802 -15642862 - MER58A DNA MER1_type -9 215 2 2212 110 3 0 chr1 266551188 266551496 -15642168 + AluSp SINE Alu 1 309 -4 2015 130 3 9 chr1 266551795 266552110 -15641554 + AluSp SINE Alu 1 313 0 1965 122 14 3 chr1 266552124 266552420 -15641244 + AluSx SINE Alu 6 304 -8 363 270 94 27 chr1 266552942 266553189 -15640475 + L1ME LINE L1 5548 5699 -422 1651 151 3 41 chr1 266553200 266553517 -15640147 + AluJo SINE Alu 1 305 -7 808 189 0 0 chr1 266553719 266553851 -15639813 + AluJo/FLAM SINE Alu 1 132 -170 2732 3 0 0 chr1 266553852 266554154 -15639510 + AluYa5 SINE Alu 1 302 -9 997 167 50 59 chr1 266556205 266556426 -15637238 - MER20 DNA MER1_type 0 219 1 216 0 0 0 chr1 266557725 266557749 -15635915 + (CGG)n Simple_repeat Simple_repeat 2 25 0 1016 99 0 0 chr1 266560777 266560918 -15632746 - FRAM SINE Alu -36 140 1 2247 167 5 5 chr1 266561617 266561994 -15631670 - MER65A LTR ERV1 0 445 69 245 207 61 61 chr1 266562160 266562242 -15631422 + L2 LINE L2 2594 2675 -639 210 238 0 0 chr1 266562326 266562334 -15631330 + (CATATA)n Simple_repeat Simple_repeat 2 9 -55 1744 135 0 0 chr1 266562334 266562593 -15631071 + AluSx SINE Alu 34 292 -20 210 238 0 0 chr1 266562593 266562647 -15631017 + (CATATA)n Simple_repeat Simple_repeat 8 64 0 1856 136 30 0 chr1 266562892 266563193 -15630471 + AluSx SINE Alu 1 310 -2 303 273 26 0 chr1 266563206 266563283 -15630381 + L2 LINE L2 3015 3093 -179 207 0 0 0 chr1 266563740 266563763 -15629901 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 424 307 133 31 chr1 266566253 266566478 -15627186 - MIR SINE MIR 0 262 15 195 348 54 11 chr1 266566494 266566586 -15627078 - L2 LINE L2 -65 3207 3112 270 238 25 88 chr1 266567727 266567807 -15625857 - MER68 LTR ERV1 0 562 488 913 170 131 99 chr1 266567811 266568093 -15625571 - MER77 LTR ERV1 -312 293 3 356 289 19 10 chr1 266568108 266568212 -15625452 - L2 LINE L2 -31 3282 3178 2237 103 0 0 chr1 266568306 266568608 -15625056 - AluY SINE Alu -9 302 1 192 215 185 0 chr1 266568628 266568693 -15624971 - L3 LINE CR1 -1094 483 407 1263 231 103 28 chr1 266568739 266569168 -15624496 - MLT1C LTR MaLR -1 466 6 220 306 76 62 chr1 266569170 266569314 -15624350 - L3 LINE CR1 -1207 370 225 840 204 0 0 chr1 266569350 266569512 -15624152 + AluJb SINE Alu 137 298 -14 1592 178 3 10 chr1 266570692 266570990 -15622674 - AluJo SINE Alu -16 296 1 2207 86 7 0 chr1 266571000 266571290 -15622374 - AluSc SINE Alu -17 292 1 924 341 77 26 chr1 266571363 266572015 -15621649 - L2 LINE L2 -1 3271 2580 293 219 219 71 chr1 266572361 266572516 -15621148 - MIR SINE MIR -3 259 82 1118 241 20 58 chr1 266572523 266572658 -15621006 + MER46C DNA MER2_type 7 146 -192 2209 100 0 0 chr1 266572658 266572949 -15620715 + AluSg SINE Alu 1 291 -19 1118 241 20 58 chr1 266572949 266573158 -15620506 + MER46C DNA MER2_type 146 338 0 232 292 14 14 chr1 266573159 266573231 -15620433 - MIR SINE MIR -184 78 7 1017 306 40 20 chr1 266573881 266574234 -15619430 - MLT1I LTR MaLR -3 406 47 488 63 0 0 chr1 266574943 266575006 -15618658 + AluSc SINE Alu 234 296 -13 3679 162 44 28 chr1 266576475 266577203 -15616461 - L1MB3 LINE L1 0 6183 5444 31 88 0 0 chr1 266577376 266577456 -15616208 + AT_rich Low_complexity Low_complexity 1 80 0 2073 112 0 7 chr1 266577508 266577803 -15615861 - AluSq SINE Alu -20 293 1 1944 152 0 0 chr1 266577891 266578193 -15615471 - AluSx SINE Alu -10 302 1 2354 82 0 3 chr1 266578621 266578926 -15614738 + AluY SINE Alu 1 304 -7 1760 131 10 46 chr1 266578937 266579243 -15614421 + AluJb SINE Alu 1 295 -17 2186 170 16 49 chr1 266579990 266580437 -15613227 - MSTB1 LTR MaLR 0 432 1 225 0 0 0 chr1 266580486 266580511 -15613153 + (T)n Simple_repeat Simple_repeat 1 25 0 716 196 0 23 chr1 266580670 266580803 -15612861 - FLAM_C SINE Alu -3 130 1 844 301 93 22 chr1 266581577 266581986 -15611678 - L2 LINE L2 -18 3295 2858 1654 193 36 48 chr1 266582901 266583347 -15610317 - L1MD2 LINE L1 -3 8039 6247 1548 167 57 4 chr1 266583360 266583641 -15610023 - L1MC2 LINE L1 -54 6290 5995 368 136 99 25 chr1 266583645 266583726 -15609938 - L1MC2 LINE L1 -443 5901 5815 * 619 210 0 0 chr1 266583718 266583842 -15609822 - L1MC4 LINE L1 -395 7647 7524 809 301 86 18 chr1 266584134 266584795 -15608869 + HAL1b LINE L1 158 863 -485 435 285 34 20 chr1 266585043 266585301 -15608363 + L1M4 LINE L1 2130 2390 -3756 * 1190 296 65 39 chr1 266585293 266585354 -15608310 + L1M4 LINE L1 2865 2923 -3223 2236 79 0 3 chr1 266585354 266585657 -15608007 - AluY SINE Alu -9 302 1 1190 296 65 39 chr1 266585657 266586557 -15607107 + L1M4 LINE L1 2923 3852 -2294 2233 213 66 25 chr1 266586562 266586614 -15607050 - MLT2B1 LTR ERVL 0 520 472 1984 158 17 26 chr1 266586614 266586689 -15606975 + MER7A DNA MER2_type 2 76 -2962 2283 25 42 11 chr1 266586689 266586974 -15606690 - AluY SINE Alu -17 294 1 1984 158 17 26 chr1 266586974 266587246 -15606418 + MER7A DNA MER2_type 76 344 -2 2233 213 66 25 chr1 266587246 266587681 -15605983 - MLT2B1 LTR ERVL -48 472 13 325 241 60 70 chr1 266587711 266587910 -15605754 + L1P LINE L1 3875 4071 -2075 266 91 0 0 chr1 266587916 266587960 -15605704 - L1MA3 LINE L1 0 6305 6262 2078 58 29 11 chr1 266588103 266588377 -15605287 + AluSc SINE Alu 1 279 -30 343 0 0 0 chr1 266588377 266588415 -15605249 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 486 303 105 71 chr1 266588423 266588803 -15604861 - HAL1 LINE L1 -2049 458 66 228 338 113 50 chr1 266589417 266589657 -15604007 + L2 LINE L2 2837 3091 -181 1608 162 101 37 chr1 266589901 266590277 -15603387 + Tigger6a DNA MER2_type 2 401 -682 1791 167 26 56 chr1 266590320 266590586 -15603078 + Tigger6a DNA MER2_type 388 638 -959 1743 150 0 11 chr1 266590586 266590860 -15602804 + AluJo SINE Alu 7 277 -35 1791 167 26 56 chr1 266590860 266591023 -15602641 + Tigger6a DNA MER2_type 638 804 -279 2127 125 30 3 chr1 266591025 266591328 -15602336 - AluSx SINE Alu -1 311 1 2490 61 0 0 chr1 266591338 266591635 -15602029 - AluY SINE Alu -14 297 1 2377 82 7 7 chr1 266591738 266592044 -15601620 - AluSq SINE Alu -7 306 1 998 167 52 52 chr1 266592522 266592690 -15600974 + Tigger6a DNA MER2_type 814 984 -613 2091 123 0 7 chr1 266592690 266592982 -15600682 + AluSx SINE Alu 1 290 -22 998 167 52 52 chr1 266592982 266593083 -15600581 + Tigger6a DNA MER2_type 983 1083 0 460 250 25 8 chr1 266593085 266593205 -15600459 - L2 LINE L2 -19 3294 3173 268 311 60 20 chr1 266593770 266593921 -15599743 + MLT1L LTR MaLR 48 204 -411 230 226 38 0 chr1 266594024 266594077 -15599587 + CT-rich Low_complexity Low_complexity 5 59 0 2613 100 19 3 chr1 266594698 266595067 -15598597 - THE1C LTR MaLR 0 375 1 10173 122 21 13 chr1 266595067 266596634 -15597030 - THE1C-int LTR MaLR 0 1580 1 2551 116 14 3 chr1 266596635 266597005 -15596659 - THE1C LTR MaLR -1 374 1 1697 181 80 0 chr1 266597494 266597832 -15595832 - MLT1A1 LTR MaLR 0 365 1 320 384 80 27 chr1 266597952 266598079 -15595585 - MIR SINE MIR -2 260 114 1900 158 0 3 chr1 266598079 266598370 -15595294 - AluJb SINE Alu -22 290 1 320 384 80 27 chr1 266598370 266598466 -15595198 - MIR SINE MIR -148 114 25 460 266 91 13 chr1 266598772 266599037 -15594627 - L1ME LINE L1 -513 5608 5322 9485 184 19 7 chr1 266599037 266599321 -15594343 - L1PA15 LINE L1 -3 6162 5883 2255 124 30 28 chr1 266599321 266599684 -15593980 + THE1B LTR MaLR 1 364 0 9485 184 19 7 chr1 266599684 266600543 -15593121 - L1PA15 LINE L1 -282 5883 5036 2405 73 3 3 chr1 266600543 266600844 -15592820 - AluY SINE Alu -10 301 1 9485 184 19 7 chr1 266600844 266602380 -15591284 - L1PA15 LINE L1 -1129 5036 3442 1192 224 25 17 chr1 266602380 266602733 -15590931 - L1PA15 LINE L1 -3288 2858 2503 1485 135 149 0 chr1 266602744 266603026 -15590638 - Tigger1 DNA MER2_type -1937 481 158 41 87 0 0 chr1 266603054 266603158 -15590506 + AT_rich Low_complexity Low_complexity 1 104 0 206 335 92 40 chr1 266603613 266603765 -15589899 - MIR3 SINE MIR -45 163 4 786 259 90 19 chr1 266605879 266606091 -15587573 - MIR SINE MIR 0 262 36 381 333 119 8 chr1 266606124 266606376 -15587288 + HAL1 LINE L1 1139 1418 -1089 1825 46 0 0 chr1 266606385 266606602 -15587062 + AluY SINE Alu 87 303 -8 249 273 62 39 chr1 266606685 266606813 -15586851 + HAL1 LINE L1 1521 1651 -856 2181 99 7 7 chr1 266606855 266607148 -15586516 + AluSg SINE Alu 1 293 -17 470 179 241 0 chr1 266607516 266607628 -15586036 + AluSq/x SINE Alu 1 139 -174 24 0 0 0 chr1 266607632 266607656 -15586008 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr1 266607726 266607752 -15585912 + (CA)n Simple_repeat Simple_repeat 2 27 0 263 224 109 54 chr1 266607773 266607920 -15585744 + L1M4 LINE L1 3540 3694 -2452 1712 163 14 3 chr1 266607946 266608235 -15585429 - AluJb SINE Alu -17 295 4 312 289 16 8 chr1 266608356 266608477 -15585187 - L1M4 LINE L1 -2309 3837 3716 411 320 122 0 chr1 266608500 266608681 -15584983 - L1ME LINE L1 -411 5759 5557 2481 86 0 0 chr1 266609502 266609803 -15583861 + AluSq SINE Alu 1 301 -12 867 143 0 0 chr1 266609828 266609954 -15583710 + FLAM_C SINE Alu 1 126 -17 28 29 0 0 chr1 266609954 266609989 -15583675 + AT_rich Low_complexity Low_complexity 1 35 0 414 239 73 29 chr1 266610168 266610373 -15583291 - L1MC4a LINE L1 -1919 5889 5676 338 312 30 10 chr1 266610531 266610733 -15582931 - L1ME LINE L1 -312 5809 5604 378 69 69 0 chr1 266610742 266610800 -15582864 - L1PA7 LINE L1 -3 6151 6090 3203 147 18 31 chr1 266610822 266611441 -15582223 - L1PB4 LINE L1 -14 6142 5532 25 0 0 0 chr1 266611469 266611494 -15582170 + AT_rich Low_complexity Low_complexity 1 25 0 1685 146 75 0 chr1 266611494 266611762 -15581902 - AluJb SINE Alu -23 289 2 304 321 58 36 chr1 266612074 266612298 -15581366 - HERVL LTR ERVL -2995 2659 2431 922 351 30 14 chr1 266612298 266612728 -15580936 - HERVL LTR ERVL -3308 2456 2020 979 194 42 51 chr1 266615345 266615562 -15578102 - MER20 DNA MER1_type -4 215 1 2494 57 0 3 chr1 266616016 266616316 -15577348 + AluY SINE Alu 1 299 -12 474 261 92 29 chr1 266616444 266616750 -15576914 - L1ME4a LINE L1 -104 6017 5693 405 326 34 0 chr1 266616874 266617052 -15576612 + L1M4 LINE L1 4742 4925 -1221 359 310 42 11 chr1 266617060 266617321 -15576343 + L1M4 LINE L1 4970 5238 -908 2368 115 0 0 chr1 266617356 266617668 -15575996 - AluSx SINE Alu 0 312 1 1100 246 99 49 chr1 266617668 266617906 -15575758 - L2 LINE L2 -6 3307 3082 2460 175 30 12 chr1 266617906 266618402 -15575262 - MLT1D LTR MaLR 0 505 1 1100 246 99 49 chr1 266618402 266618809 -15574855 - L2 LINE L2 -231 3082 2631 932 226 186 31 chr1 266618816 266619263 -15574401 - MLT1H1 LTR MaLR -8 547 32 472 260 24 0 chr1 266619272 266619395 -15574269 - L2 LINE L2 -681 2633 2508 981 212 10 5 chr1 266619412 266619610 -15574054 - MLT1B LTR MaLR -4 386 188 436 189 98 42 chr1 266619731 266619874 -15573790 - MLT1B LTR MaLR -220 170 20 1975 224 128 33 chr1 266619884 266620523 -15573141 - L2 LINE L2 -820 2494 1795 206 247 136 0 chr1 266620506 266620587 -15573077 + L2 LINE L2 3172 3263 -9 * 2274 107 0 31 chr1 266620655 266620972 -15572692 + AluSg SINE Alu 1 307 -3 187 158 18 18 chr1 266621025 266621082 -15572582 + (TA)n Simple_repeat Simple_repeat 2 58 0 2167 186 71 22 chr1 266621127 266621824 -15571840 - L1MB8 LINE L1 -2 6176 5427 1608 133 42 4 chr1 266622182 266622446 -15571218 - AluSx SINE Alu -1 311 38 1716 113 51 27 chr1 266622582 266622875 -15570789 + AluJb SINE Alu 1 300 -12 208 222 30 126 chr1 266624002 266624137 -15569527 - L2 LINE L2 -4 3268 3147 733 219 101 18 chr1 266624201 266624420 -15569244 - MIR SINE MIR -1 261 25 213 239 299 0 chr1 266626082 266626149 -15567515 + L2 LINE L2 3137 3223 -49 249 189 19 0 chr1 266626309 266626362 -15567302 - MLT1F1 LTR MaLR -70 472 419 938 258 43 18 chr1 266626445 266626724 -15566940 - MLT1F1 LTR MaLR -281 286 1 2067 57 38 92 chr1 266626805 266627121 -15566543 + AluY SINE Alu 1 299 -12 1238 108 0 0 chr1 266627126 266627293 -15566371 + AluSg/x SINE Alu 129 295 -17 1661 148 30 30 chr1 266627345 266627650 -15566014 - AluJb SINE Alu -7 305 1 196 268 268 0 chr1 266627744 266627815 -15565849 - L2 LINE L2 -15 3257 3168 294 340 60 20 chr1 266627855 266627955 -15565709 + L2 LINE L2 3122 3225 -47 259 98 0 0 chr1 266628253 266628294 -15565370 + L1MA9 LINE L1 6108 6148 -164 910 151 22 70 chr1 266628294 266628479 -15565185 + AluJo SINE Alu 126 301 -11 255 77 0 0 chr1 266628484 266628523 -15565141 + L1MA9 LINE L1 6177 6215 -97 585 0 0 0 chr1 266628524 266628589 -15565075 + (CA)n Simple_repeat Simple_repeat 2 66 0 1709 177 7 10 chr1 266628596 266628895 -15564769 - AluJb SINE Alu -14 298 1 243 139 0 0 chr1 266628896 266628939 -15564725 + L1MA9 LINE L1 6269 6311 -1 1980 105 0 102 chr1 266629471 266629803 -15563861 - AluSx SINE Alu -14 298 1 1701 228 38 59 chr1 266630007 266630621 -15563043 - L1MC4 LINE L1 -2 8040 7440 227 305 126 97 chr1 266630637 266630906 -15562758 - L2 LINE L2 -483 2831 2555 239 233 96 14 chr1 266631185 266631258 -15562406 - L2 LINE L2 -5 3267 3189 2050 133 0 0 chr1 266633232 266633532 -15560132 - AluSc SINE Alu -8 301 2 2039 144 0 0 chr1 266633861 266634167 -15559497 + AluJb SINE Alu 1 306 -6 240 306 204 6 chr1 266634366 266634523 -15559141 + L2 LINE L2 1814 2001 -1313 1457 137 0 5 chr1 266635141 266635352 -15558312 + AluJb SINE Alu 91 300 -12 1176 130 97 5 chr1 266635700 266635916 -15557748 - MER46A DNA MER2_type 0 236 1 2070 118 40 3 chr1 266636305 266636601 -15557063 + AluSx SINE Alu 1 307 -5 269 241 179 0 chr1 266636665 266636777 -15556887 - L1MEc LINE L1 -2647 3568 3437 2070 194 109 116 chr1 266636779 266638141 -15555523 - L1MEc LINE L1 -3225 2990 1677 1618 280 20 8 chr1 266638142 266638632 -15555032 - L1MEc LINE L1 -5861 535 40 2206 74 0 3 chr1 266639311 266639596 -15554068 + AluSg SINE Alu 9 292 -18 1137 125 94 58 chr1 266639736 266639960 -15553704 - MER46A DNA MER2_type 0 236 5 257 325 138 0 chr1 266642211 266642334 -15551330 - MIR SINE MIR -55 207 68 263 238 26 99 chr1 266642462 266642613 -15551051 + L2 LINE L2 3119 3258 -55 1127 265 59 28 chr1 266643042 266643468 -15550196 - MLT1J1 LTR MaLR -4 442 4 2417 103 0 0 chr1 266643785 266644097 -15549567 - AluSx SINE Alu 0 312 1 2437 57 30 0 chr1 266644244 266644540 -15549124 - AluY SINE Alu -6 305 1 371 326 44 7 chr1 266644707 266644842 -15548822 - MIR3 SINE MIR -61 147 8 407 291 211 23 chr1 266644862 266645299 -15548365 - L2 LINE L2 -661 2653 2135 1793 102 98 0 chr1 266645581 266645827 -15547837 + AluSg SINE Alu 11 280 -30 1805 163 25 64 chr1 266646237 266646643 -15547021 - MLT1B LTR MaLR 0 390 1 248 246 0 18 chr1 266647062 266647119 -15546545 + CT-rich Low_complexity Low_complexity 5 60 0 27 0 0 65 chr1 266647459 266647505 -15546159 + AT_rich Low_complexity Low_complexity 1 43 0 317 351 86 15 chr1 266647721 266647952 -15545712 + MIR SINE MIR 5 256 -6 1451 137 43 133 chr1 266648093 266648415 -15545249 + AluJo SINE Alu 1 293 -19 1882 134 43 13 chr1 266648423 266648722 -15544942 + AluSx SINE Alu 3 310 -2 2350 174 34 31 chr1 266648996 266649549 -15544115 - L1MB7 LINE L1 -19 6165 5611 2524 80 3 0 chr1 266650083 266650395 -15543269 - AluSp SINE Alu 0 313 1 21 0 0 0 chr1 266650704 266650725 -15542939 + AT_rich Low_complexity Low_complexity 1 21 0 457 259 132 29 chr1 266651243 266651417 -15542247 + MIR SINE MIR 53 244 -18 2777 139 35 26 chr1 266651461 266652001 -15541663 + L1MB3 LINE L1 5635 6179 -4 22 0 0 0 chr1 266652617 266652639 -15541025 + AT_rich Low_complexity Low_complexity 1 22 0 463 341 43 0 chr1 266653258 266653469 -15540195 - L2 LINE L2 -463 2851 2632 436 307 274 16 chr1 266653481 266654031 -15539633 - L2 LINE L2 -910 2404 1713 678 215 34 98 chr1 266654264 266654590 -15539074 - LTR41 LTR ERVL -7 766 462 369 247 133 12 chr1 266654739 266654905 -15538759 - LTR41 LTR ERVL -587 186 1 43 35 0 0 chr1 266655153 266655210 -15538454 + AT_rich Low_complexity Low_complexity 1 57 0 2256 78 0 4 chr1 266655727 266656038 -15537626 - AluY SINE Alu 0 310 1 232 167 0 0 chr1 266656084 266656126 -15537538 + L1PB4 LINE L1 6107 6148 -8 2210 86 3 0 chr1 266656373 266656688 -15536976 - AluY SINE Alu 0 316 1 30 27 0 0 chr1 266656744 266656781 -15536883 + AT_rich Low_complexity Low_complexity 1 37 0 2336 77 0 10 chr1 266656830 266657128 -15536536 - AluSq SINE Alu -18 295 1 1242 120 0 0 chr1 266657203 266657370 -15536294 - AluSq SINE Alu -146 167 1 744 280 30 10 chr1 266657946 266658146 -15535518 - MIR SINE MIR -52 210 7 233 226 36 71 chr1 266658185 266658269 -15535395 + MIR SINE MIR 155 235 -27 252 214 29 19 chr1 266658532 266658635 -15535029 + (TTAA)n Simple_repeat Simple_repeat 3 106 0 30 45 0 0 chr1 266658635 266658679 -15534985 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr1 266659243 266659265 -15534399 + AT_rich Low_complexity Low_complexity 1 22 0 235 217 17 133 chr1 266659314 266659434 -15534230 + MIR3 SINE MIR 69 174 -34 186 368 98 40 chr1 266659532 266659706 -15533958 + L2 LINE L2 2865 3048 -224 848 223 29 44 chr1 266659752 266659958 -15533706 - MIR SINE MIR -1 261 59 264 311 49 80 chr1 266659931 266660281 -15533383 - L2 LINE L2 -1713 1601 1263 * 264 321 60 0 chr1 266660693 266660777 -15532887 - L3 LINE CR1 -23 1554 1466 2353 111 0 0 chr1 266661854 266662160 -15531504 + AluSg SINE Alu 1 306 -4 44 46 0 0 chr1 266662466 266662531 -15531133 + AT_rich Low_complexity Low_complexity 1 65 0 2021 138 3 3 chr1 266663259 266663555 -15530109 - AluSx SINE Alu -16 296 1 2905 217 70 42 chr1 266663635 266664589 -15529075 + L1M4 LINE L1 2185 3176 -2970 1941 102 47 4 chr1 266664589 266664864 -15528800 + AluSx SINE Alu 1 287 -25 2905 217 70 42 chr1 266664864 266665028 -15528636 + L1M4 LINE L1 3176 3334 -2812 1845 122 0 0 chr1 266665031 266665278 -15528386 - AluSx SINE Alu -65 247 1 572 163 0 0 chr1 266665286 266665372 -15528292 - FLAM SINE Alu -18 125 40 1449 109 0 0 chr1 266665527 266665719 -15527945 - AluSx SINE Alu -119 193 2 3204 89 2 16 chr1 266665813 266666263 -15527401 - MLT2A1 LTR ERVL 0 444 1 3737 20 11 0 chr1 266666743 266667188 -15526476 + L1PA2 LINE L1 5706 6155 0 737 287 49 13 chr1 266667328 266667635 -15526029 + ERVL-B1 LTR ERVL 5118 5435 -329 2410 73 7 0 chr1 266667693 266667996 -15525668 - AluSp SINE Alu -8 305 1 582 209 130 28 chr1 266668731 266668946 -15524718 + L1MC4a LINE L1 5357 5593 -2215 301 276 28 48 chr1 266668966 266669114 -15524550 + L1MC4a LINE L1 5681 5780 -341 2288 102 0 0 chr1 266669114 266669409 -15524255 + AluSq SINE Alu 1 295 -18 301 276 28 48 chr1 266669409 266669454 -15524210 + L1MC4a LINE L1 5780 5824 -297 2066 104 20 7 chr1 266669780 266670077 -15523587 - AluSc SINE Alu -8 301 1 193 227 0 23 chr1 266670250 266670294 -15523370 - L2 LINE L2 -2063 1251 1209 417 272 69 58 chr1 266670508 266670681 -15522983 - L1ME3A LINE L1 -206 5956 5782 1926 122 0 11 chr1 266670793 266671063 -15522601 - AluSx SINE Alu -45 267 1 5653 256 105 48 chr1 266671094 266672417 -15521247 + L2 LINE L2 780 2027 -1286 880 188 36 18 chr1 266672417 266672582 -15521082 + FAM SINE Alu 1 168 -7 5653 256 105 48 chr1 266672582 266672762 -15520902 + L2 LINE L2 2027 2195 -1118 2263 120 0 0 chr1 266672762 266673063 -15520601 + AluSx SINE Alu 1 301 -11 5653 256 105 48 chr1 266673063 266673964 -15519700 + L2 LINE L2 2195 3307 -6 418 271 179 0 chr1 266673964 266673988 -15519676 - L1ME3A LINE L1 -439 5731 5713 2006 108 0 69 chr1 266673988 266674328 -15519336 - AluSx SINE Alu 0 319 1 418 271 179 0 chr1 266674328 266674367 -15519297 - L1ME3A LINE L1 -457 5713 5684 1715 202 90 50 chr1 266674367 266674638 -15519026 + MLT2B1 LTR ERVL 1 260 -260 2274 111 0 3 chr1 266674638 266674944 -15518720 + AluSq SINE Alu 1 305 -8 1715 202 90 50 chr1 266674944 266675128 -15518536 + MLT2B1 LTR ERVL 260 435 -85 324 0 0 0 chr1 266675128 266675164 -15518500 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr1 266675163 266675187 -15518477 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 1715 202 90 50 chr1 266675164 266675230 -15518434 + MLT2B1 LTR ERVL 435 520 0 418 271 179 0 chr1 266675230 266675408 -15518256 - L1ME3A LINE L1 -486 5684 5508 1937 170 0 0 chr1 266675451 266675751 -15517913 - AluJo SINE Alu -12 300 1 229 250 29 0 chr1 266675797 266675865 -15517799 - MER116 DNA Mariner -10 70 1 451 176 18 91 chr1 266676057 266676222 -15517442 - L1MB8 LINE L1 -120 6058 5906 1603 76 0 9 chr1 266676238 266676448 -15517216 - AluY SINE Alu -103 208 1 1180 112 29 10 chr1 266676486 266676692 -15516972 - L1MB8 LINE L1 -292 5886 5677 2472 88 0 0 chr1 266676704 266677010 -15516654 - AluSp SINE Alu -7 306 1 180 0 0 0 chr1 266677015 266677035 -15516629 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1967 139 7 3 chr1 266677039 266677327 -15516337 - AluSx SINE Alu -23 289 1 1579 174 30 15 chr1 266677340 266677674 -15515990 - L1M4 LINE L1 -1880 4266 3928 594 220 160 0 chr1 266678418 266678618 -15515046 - L1M4 LINE L1 -2200 3946 3715 495 283 35 82 chr1 266678888 266679082 -15514582 - L1ME4a LINE L1 -53 6068 5866 2360 88 0 16 chr1 266679082 266679388 -15514276 - AluSx SINE Alu -11 301 1 495 283 35 82 chr1 266679388 266679684 -15513980 - L1ME4a LINE L1 -255 5866 5601 21 82 0 0 chr1 266680276 266680325 -15513339 + AT_rich Low_complexity Low_complexity 1 49 0 343 226 72 72 chr1 266680347 266680652 -15513012 + L1MC5 LINE L1 7620 7924 -37 198 164 33 16 chr1 266680672 266680733 -15512931 + GA-rich Low_complexity Low_complexity 1 62 0 189 0 0 0 chr1 266680901 266680922 -15512742 + (CA)n Simple_repeat Simple_repeat 2 22 0 181 295 49 0 chr1 266681059 266681120 -15512544 - MIR SINE MIR -122 140 77 2274 95 7 0 chr1 266681123 266681419 -15512245 + AluSg SINE Alu 1 298 -12 1047 167 24 63 chr1 266681567 266681819 -15511845 - MLT1C LTR MaLR -225 242 1 2112 103 10 3 chr1 266681918 266682209 -15511455 - AluSc SINE Alu -16 293 1 1122 130 0 6 chr1 266682213 266682382 -15511282 - AluSg/x SINE Alu -8 302 135 311 65 22 0 chr1 266682687 266682733 -15510931 + (GA)n Simple_repeat Simple_repeat 1 47 0 1839 166 10 0 chr1 266683377 266683678 -15509986 + AluJo SINE Alu 1 304 -8 282 118 0 0 chr1 266683774 266683825 -15509839 - Alu SINE Alu 0 301 251 347 297 58 47 chr1 266684682 266685037 -15508627 - L1MC4a LINE L1 -1901 5907 5548 2405 84 0 0 chr1 266685037 266685334 -15508330 + AluSq SINE Alu 1 297 -16 310 279 20 14 chr1 266685363 266685508 -15508156 - L1MC4a LINE L1 -752 5399 5254 7107 26 0 1 chr1 266685902 266686733 -15506931 + L1PA3 LINE L1 5326 6155 0 1489 174 19 19 chr1 266686817 266687128 -15506536 - L1MB7 LINE L1 0 6184 5874 1265 170 49 15 chr1 266687314 266687610 -15506054 - L1MB7 LINE L1 -302 5882 5586 2373 83 0 0 chr1 266687727 266688027 -15505637 + AluSg SINE Alu 1 300 -10 2389 157 51 18 chr1 266688207 266688697 -15504967 + L1MB3 LINE L1 5668 6173 -10 23 0 0 0 chr1 266689856 266689879 -15503785 + AT_rich Low_complexity Low_complexity 1 23 0 2349 100 0 0 chr1 266689879 266690180 -15503484 - AluSc SINE Alu -8 301 1 1325 77 0 12 chr1 266690185 266690354 -15503310 - L1PA11 LINE L1 -1 6173 6007 1512 151 118 26 chr1 266690990 266691294 -15502370 - MER44D DNA MER2_type -7 602 1 2825 134 21 5 chr1 266691346 266691765 -15501899 - MSTB LTR MaLR 0 426 1 2582 55 0 0 chr1 266692019 266692328 -15501336 + AluY SINE Alu 1 309 -2 258 218 23 23 chr1 266694140 266694227 -15499437 + (TA)n Simple_repeat Simple_repeat 1 87 0 1880 144 3 14 chr1 266695478 266695769 -15497895 - AluSx SINE Alu -24 288 1 2153 114 0 7 chr1 266696137 266696436 -15497228 - AluSg SINE Alu -8 302 6 21 57 0 0 chr1 266696527 266696562 -15497102 + AT_rich Low_complexity Low_complexity 1 35 0 626 186 73 98 chr1 266697753 266697796 -15495868 - L1MA9 LINE L1 -8 6304 6261 2027 121 7 13 chr1 266697796 266698094 -15495570 + AluSq SINE Alu 1 296 -17 1961 116 0 0 chr1 266698098 266698357 -15495307 + AluSc SINE Alu 35 293 -16 626 186 73 98 chr1 266698357 266698512 -15495152 - L1MA9 LINE L1 -54 6258 6106 486 239 0 11 chr1 266698555 266698647 -15495017 - FLAM_A SINE Alu -48 94 4 1285 140 88 20 chr1 266698648 266698898 -15494766 - L1MA9 LINE L1 -204 6108 5842 248 294 67 63 chr1 266700643 266700907 -15492757 - L1MC/D LINE L1 -1995 5813 5548 2263 85 3 0 chr1 266700907 266701200 -15492464 + AluSg SINE Alu 1 294 -16 350 292 31 12 chr1 266701229 266701435 -15492229 - L1MC/D LINE L1 -747 5399 5191 7531 28 0 2 chr1 266701768 266702600 -15491064 + L1PA3 LINE L1 5326 6155 0 1618 177 19 19 chr1 266702684 266702995 -15490669 - L1MB7 LINE L1 0 6184 5874 336 132 162 0 chr1 266703181 266703249 -15490415 - L1MB7 LINE L1 -302 5882 5804 1270 14 0 0 chr1 266703251 266703394 -15490270 - L1PA3 LINE L1 -151 6004 5862 * 4340 6 0 0 chr1 266703393 266703866 -15489798 + L1PA3 LINE L1 5401 5873 -282 27 62 0 0 chr1 266704202 266704250 -15489414 + AT_rich Low_complexity Low_complexity 1 48 0 2165 110 0 0 chr1 266704532 266704814 -15488850 + AluY SINE Alu 15 296 -15 345 307 150 8 chr1 266705171 266705298 -15488366 - L2 LINE L2 0 3272 3128 2242 104 3 3 chr1 266706937 266707234 -15486430 - AluSq SINE Alu -16 297 1 429 239 18 18 chr1 266707713 266707826 -15485838 + MLT1I LTR MaLR 22 134 -275 30 27 0 0 chr1 266708841 266708878 -15484786 + AT_rich Low_complexity Low_complexity 1 37 0 2200 94 0 3 chr1 266708900 266709186 -15484478 + AluSx SINE Alu 1 285 -27 285 29 0 0 chr1 266709189 266709223 -15484441 + (CA)n Simple_repeat Simple_repeat 2 35 0 2276 168 8 35 chr1 266709796 266710194 -15483470 - MLT1B LTR MaLR 0 390 4 425 291 68 63 chr1 266710600 266710837 -15482827 + MIR SINE MIR 15 252 -10 1685 136 24 41 chr1 266710843 266711137 -15482527 - AluJo SINE Alu -23 289 1 7182 78 26 34 chr1 266711457 266712539 -15481125 - L1PA14 LINE L1 0 6161 5072 2301 109 3 3 chr1 266712539 266712851 -15480813 - AluSx SINE Alu 0 312 1 7182 78 26 34 chr1 266712851 266713299 -15480365 - L1PA14 LINE L1 -1089 5072 4640 2100 119 0 0 chr1 266713299 266713576 -15480088 - AluSx SINE Alu -35 277 1 7182 78 26 34 chr1 266713576 266713968 -15479696 - L1PA14 LINE L1 -1521 4640 4246 2300 101 0 0 chr1 266714017 266714314 -15479350 + AluSq SINE Alu 1 297 -16 1466 187 4 16 chr1 266714572 266714829 -15478835 - AluJo SINE Alu -21 291 38 263 260 110 62 chr1 266715959 266716105 -15477559 + MIR SINE MIR 64 216 -46 812 148 49 0 chr1 266717009 266717131 -15476533 - FLAM_C SINE Alu -2 131 4 691 110 0 0 chr1 266717147 266717238 -15476426 - AluSp/q SINE Alu -20 293 203 2025 159 25 6 chr1 266717241 266717594 -15476070 - L1MC2 LINE L1 -22 6322 5963 2876 105 11 0 chr1 266718595 266718966 -15474698 + THE1C LTR MaLR 1 375 0 933 84 13 19 chr1 266719682 266719837 -15473827 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 2257 86 4 0 chr1 266719837 266720117 -15473547 - AluSq SINE Alu -32 281 1 27 49 0 0 chr1 266720127 266720168 -15473496 + AT_rich Low_complexity Low_complexity 1 41 0 892 295 48 6 chr1 266720243 266720558 -15473106 - MLT1J LTR MaLR -7 504 177 783 296 56 31 chr1 266720906 266721230 -15472434 - MLT1I LTR MaLR -6 403 72 184 318 79 16 chr1 266721802 266721865 -15471799 - L2 LINE L2 -65 3207 3141 739 257 110 4 chr1 266722076 266722313 -15471351 + MIR SINE MIR 1 262 0 1011 183 55 73 chr1 266722380 266722481 -15471183 - L1MB2 LINE L1 -4 6167 6066 2296 87 0 0 chr1 266722481 266722768 -15470896 - AluSc SINE Alu -22 287 1 1011 183 55 73 chr1 266722768 266722939 -15470725 - L1MB2 LINE L1 -105 6066 5900 2425 269 54 3 chr1 266723936 266724532 -15469132 - MLT2E LTR ERVL -2 626 1 1840 170 14 0 chr1 266724801 266725083 -15468581 - AluJb SINE Alu -26 286 1 382 250 31 0 chr1 266725201 266725297 -15468367 + MER5B DNA MER1_type 2 100 -78 * 521 241 74 37 chr1 266725295 266725457 -15468207 - MIR SINE MIR -81 181 14 341 313 34 7 chr1 266725511 266725658 -15468006 - L2 LINE L2 -898 2416 2266 364 273 102 66 chr1 266725830 266726163 -15467501 - L2 LINE L2 -924 2390 2046 332 156 37 0 chr1 266726168 266726277 -15467387 + GA-rich Low_complexity Low_complexity 2 114 0 635 189 3 0 chr1 266726287 266726417 -15467247 - MLT2C1 LTR ERVL -20 394 246 1232 164 24 56 chr1 266726473 266726643 -15467021 - AluJb SINE Alu -37 275 114 6723 81 29 1 chr1 266726643 266727881 -15465783 + L1PA13 LINE L1 4877 6163 0 1232 164 24 56 chr1 266727881 266727960 -15465704 - AluJb SINE Alu -198 114 34 938 142 0 0 chr1 266728015 266728156 -15465508 - AluJo SINE Alu -35 277 137 225 65 0 0 chr1 266728945 266728976 -15464688 + (TG)n Simple_repeat Simple_repeat 1 31 0 25 31 0 0 chr1 266729195 266729227 -15464437 + GC_rich Low_complexity Low_complexity 1 32 0 253 219 92 84 chr1 266730040 266730159 -15463505 + MIR SINE MIR 92 211 -51 361 317 0 16 chr1 266730253 266730376 -15463288 + MIR SINE MIR 142 262 0 187 177 24 202 chr1 266730575 266730699 -15462965 + MIR SINE MIR 111 212 -50 388 263 123 57 chr1 266730770 266730998 -15462666 - MIR SINE MIR -18 244 2 1867 164 17 0 chr1 266731052 266731344 -15462320 - AluJo SINE Alu -15 297 1 2269 88 3 0 chr1 266732252 266732536 -15461128 - AluSc SINE Alu -24 285 1 607 206 69 53 chr1 266732634 266732765 -15460899 - AluJo SINE Alu -169 133 1 471 179 74 0 chr1 266733558 266733653 -15460011 + Tigger3b DNA MER2_type 1 102 -1129 5969 108 38 11 chr1 266733656 266734579 -15459085 + Tigger3b DNA MER2_type 284 1231 0 258 294 0 43 chr1 266734825 266734917 -15458747 - MIR3 SINE MIR -1 207 120 2158 116 7 0 chr1 266735096 266735398 -15458266 + AluSx SINE Alu 1 304 -8 488 310 78 37 chr1 266735496 266735764 -15457900 + L3 LINE CR1 1293 1571 -6 2331 103 0 0 chr1 266736192 266736492 -15457172 - AluSx SINE Alu -12 300 1 191 303 91 15 chr1 266736992 266737058 -15456606 - L2 LINE L2 0 3272 3202 1154 154 11 11 chr1 266737073 266737248 -15456416 + FAM SINE Alu 1 175 0 4793 49 0 4 chr1 266739102 266739656 -15454008 - L1PA8 LINE L1 -8 6164 5613 5024 163 34 14 chr1 266739659 266741054 -15452610 - L1PB4 LINE L1 -1 6155 4745 242 371 0 9 chr1 266741937 266742042 -15451622 + MIR SINE MIR 87 190 -72 676 229 5 86 chr1 266742260 266742470 -15451194 - MER46C DNA MER2_type -145 193 1 216 171 0 24 chr1 266742491 266742532 -15451132 + C-rich Low_complexity Low_complexity 5 44 0 1827 158 0 23 chr1 266742836 266743139 -15450525 - AluJo SINE Alu -10 302 7 3598 119 105 58 chr1 266743482 266744779 -15448885 - pTR5 LTR ERV1 0 2438 66 183 42 0 0 chr1 266745660 266745684 -15447980 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 226 250 45 76 chr1 266745800 266745932 -15447732 + MIR SINE MIR 135 262 0 299 299 122 34 chr1 266745948 266746095 -15447569 + MIR SINE MIR 61 220 -42 352 268 57 49 chr1 266746643 266746766 -15446898 + LTR50 LTR ERVL 37 160 -635 395 218 11 0 chr1 266747076 266747163 -15446501 + LTR33A LTR ERVL 416 503 -20 3011 52 19 0 chr1 266747841 266748209 -15445455 - L1PA6 LINE L1 -10 6144 5770 528 219 53 20 chr1 266748223 266748374 -15445290 + L1M4 LINE L1 2537 2692 -3454 39923 77 5 17 chr1 266748411 266754529 -15439135 - L1PA5 LINE L1 -99 6055 11 215 186 68 0 chr1 266754609 266754668 -15438996 + (TTA)n Simple_repeat Simple_repeat 2 64 0 252 287 85 37 chr1 266754986 266755086 -15438578 - L1ME4a LINE L1 -202 5919 5806 2249 109 3 0 chr1 266755086 266755388 -15438276 - AluSx SINE Alu -9 303 1 252 287 85 37 chr1 266755388 266755451 -15438213 - L1ME4a LINE L1 -315 5806 5748 1231 226 66 62 chr1 266755496 266755934 -15437730 - MLT1J1 LTR MaLR 0 446 7 1922 134 67 40 chr1 266756644 266757046 -15436618 - L1MA7 LINE L1 0 6291 5879 5887 150 20 5 chr1 266757425 266758930 -15434734 - L1PB3 LINE L1 -6 6148 4623 * 5920 163 19 27 chr1 266758924 266762789 -15430875 - L1PA11 LINE L1 0 6489 2536 1899 113 80 4 chr1 266762789 266763064 -15430600 - AluSq SINE Alu -17 296 1 5920 163 19 27 chr1 266763064 266765012 -15428652 - L1PA11 LINE L1 -3953 2536 573 1599 185 60 39 chr1 266765019 266765286 -15428378 + L1M4c LINE L1 2121 2381 -4001 218 32 32 0 chr1 266765286 266765317 -15428347 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1599 185 60 39 chr1 266765317 266765674 -15427990 + L1M4c LINE L1 2381 2769 -3613 498 108 0 0 chr1 266766325 266766399 -15427265 + (TCCA)n Simple_repeat Simple_repeat 4 77 0 513 295 34 0 chr1 266766406 266766555 -15427109 - MIR SINE MIR -75 187 34 1375 123 108 19 chr1 266766671 266767072 -15426592 + MLT1D LTR MaLR 1 505 0 * 4325 143 30 16 chr1 266767070 266767837 -15425827 + Tigger2 DNA MER2_type 1 778 -1940 1340 138 79 4 chr1 266767868 266768108 -15425556 + Tigger2 DNA MER2_type 2461 2718 0 660 239 38 38 chr1 266768321 266768534 -15425130 - L3 LINE CR1 -469 1108 896 180 0 0 0 chr1 266768618 266768638 -15425026 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr1 266770096 266770117 -15423547 + AT_rich Low_complexity Low_complexity 1 21 0 251 189 0 0 chr1 266770161 266770214 -15423450 - L1MA10 LINE L1 0 6334 6282 1050 154 12 0 chr1 266770215 266770377 -15423287 + AluSg/x SINE Alu 134 297 -15 496 189 118 77 chr1 266770455 266770624 -15423040 - L1MA10 LINE L1 -92 6242 6067 554 223 336 18 chr1 266770772 266771046 -15422618 - MER113 DNA MER1_type? -12 509 149 319 303 48 12 chr1 266771149 266771314 -15422350 - L3 LINE CR1 -244 1333 1163 1610 148 11 0 chr1 266771565 266771842 -15421822 + L1P LINE L1 5023 5302 -844 699 248 89 5 chr1 266772365 266772579 -15421085 + MIR SINE MIR 8 239 -23 279 337 0 0 chr1 266773524 266773616 -15420048 - MER5A DNA MER1_type -84 105 14 941 163 11 28 chr1 266773977 266774155 -15419509 - FAM SINE Alu 0 175 1 653 245 83 10 chr1 266774638 266774860 -15418804 + MIR SINE MIR 14 249 -13 2206 119 3 0 chr1 266776664 266776967 -15416697 - AluSg SINE Alu -2 308 5 369 271 98 42 chr1 266777099 266777335 -15416329 - L3 LINE CR1 -931 646 398 451 269 38 85 chr1 266778302 266778514 -15415150 - MIR SINE MIR -7 255 54 2091 115 24 0 chr1 266778522 266778810 -15414854 + AluSx SINE Alu 2 296 -16 193 320 160 0 chr1 266779326 266779482 -15414182 - MIR SINE MIR -77 185 5 2370 56 7 36 chr1 266779498 266779800 -15413864 - AluY SINE Alu -18 293 1 24 32 0 0 chr1 266780265 266780296 -15413368 + AT_rich Low_complexity Low_complexity 1 31 0 2279 112 3 0 chr1 266780770 266781073 -15412591 + AluSx SINE Alu 1 304 -8 237 33 0 0 chr1 266782221 266782251 -15411413 + (TG)n Simple_repeat Simple_repeat 2 31 0 734 246 104 93 chr1 266782426 266782522 -15411142 - MER34 LTR ERV1 0 542 449 2294 99 0 13 chr1 266782522 266782824 -15410840 - AluSq SINE Alu -15 298 1 734 246 104 93 chr1 266782824 266783263 -15410401 - MER34 LTR ERV1 -93 449 1 372 231 131 12 chr1 266783266 266783426 -15410238 - MIR SINE MIR -28 234 56 1162 179 115 0 chr1 266783476 266783711 -15409953 - L1MD3 LINE L1 0 7995 7734 414 347 0 0 chr1 266784114 266784238 -15409426 - MER5B DNA MER1_type -10 168 45 744 133 0 0 chr1 266784250 266784363 -15409301 - AluJb SINE Alu -12 300 188 260 292 0 15 chr1 266784883 266784948 -15408716 + L2 LINE L2 3123 3186 -86 927 164 0 0 chr1 266784967 266785113 -15408551 - FAM SINE Alu -22 163 18 21 57 0 0 chr1 266785169 266785204 -15408460 + AT_rich Low_complexity Low_complexity 1 35 0 1027 92 0 0 chr1 266786135 266786266 -15407398 - THE1A LTR MaLR 0 355 225 2383 104 0 0 chr1 266786266 266786573 -15407091 - AluSg SINE Alu -1 309 3 11334 87 11 0 chr1 266786591 266788059 -15405605 - THE1A-int LTR MaLR -96 1484 1 2478 105 8 6 chr1 266788059 266788411 -15405253 - THE1A LTR MaLR 0 355 3 1337 142 13 0 chr1 266788565 266788791 -15404873 + L1MB3 LINE L1 5955 6183 0 2286 103 0 3 chr1 266790152 266790454 -15403210 - AluSx SINE Alu -9 303 3 2271 98 6 19 chr1 266791967 266792284 -15401380 + AluSq SINE Alu 1 313 0 364 288 81 12 chr1 266792877 266793037 -15400627 + MIR SINE MIR 20 190 -72 964 166 0 27 chr1 266793794 266793981 -15399683 - MIR SINE MIR -30 232 51 253 250 175 0 chr1 266796114 266796194 -15397470 + MIR SINE MIR 99 192 -70 530 196 0 7 chr1 266796391 266796529 -15397135 + (TG)n Simple_repeat Simple_repeat 1 137 0 203 369 164 0 chr1 266796910 266797124 -15396540 + L2 LINE L2 2424 2672 -642 229 295 0 0 chr1 266797126 266797187 -15396477 + MIR SINE MIR 183 243 -19 2149 167 0 17 chr1 266797401 266797748 -15395916 + MER7A DNA MER2_type 1 339 -7 241 293 70 38 chr1 266797755 266797912 -15395752 + L3 LINE CR1 1257 1418 -159 3021 213 21 38 chr1 266798161 266798262 -15395402 - MER82 DNA MER2_type -2 651 550 1857 135 16 39 chr1 266798262 266798573 -15395091 - AluJo SINE Alu -6 306 3 3021 213 21 38 chr1 266798573 266799133 -15394531 - MER82 DNA MER2_type -103 550 1 192 40 0 0 chr1 266799717 266799742 -15393922 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1246 239 70 91 chr1 266800282 266801012 -15392652 + L2 LINE L2 2447 3180 -133 2158 111 61 117 chr1 266801012 266801472 -15392192 + Tigger2a DNA MER2_type 1 434 0 1246 239 70 91 chr1 266801472 266801597 -15392067 + L2 LINE L2 3180 3306 -7 185 286 12 24 chr1 266801664 266801748 -15391916 - L2 LINE L2 -233 3039 2957 2641 77 43 8 chr1 266801831 266802183 -15391481 - THE1B LTR MaLR 0 364 1 208 298 115 39 chr1 266803154 266803258 -15390406 - L2 LINE L2 0 3272 3161 186 71 0 0 chr1 266803461 266803489 -15390175 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 329 255 19 19 chr1 266804626 266804732 -15388932 + MER5A DNA MER1_type 84 189 0 232 71 0 95 chr1 266804964 266805006 -15388658 + L2 LINE L2 3218 3255 -17 456 241 88 24 chr1 266805233 266805301 -15388363 - MER5A DNA MER1_type 0 189 127 2658 42 0 13 chr1 266805301 266805612 -15388052 + AluY SINE Alu 1 307 -4 456 241 88 24 chr1 266805612 266805713 -15387951 - MER5A DNA MER1_type -62 127 9 2088 71 0 19 chr1 266805876 266806143 -15387521 + AluSg SINE Alu 44 305 -5 4788 130 34 22 chr1 266808583 266809351 -15384313 + Ricksha_b DNA DNA 9 785 -469 820 187 5 70 chr1 266810963 266811150 -15382514 + AluJb SINE Alu 113 287 -25 198 0 0 0 chr1 266811153 266811175 -15382489 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2193 175 10 8 chr1 266811310 266811699 -15381965 - MLT1B LTR MaLR 0 390 1 2331 92 3 29 chr1 266812153 266812467 -15381197 - AluY SINE Alu -5 306 1 1737 218 85 38 chr1 266812646 266813128 -15380536 + MLT1D LTR MaLR 1 390 0 2310 242 55 85 chr1 266813166 266814503 -15379161 + L1M4 LINE L1 2 1530 -5116 403 118 0 52 chr1 266814503 266814656 -15379008 + (TA)n Simple_repeat Simple_repeat 2 146 0 1214 257 79 0 chr1 266814668 266815022 -15378642 + L1M4 LINE L1 4587 4968 -1676 810 210 48 5 chr1 266815062 266815248 -15378416 + L1M4 LINE L1 5300 5493 -1151 501 222 0 0 chr1 266815245 266815353 -15378311 + L1M1 LINE L1 5552 5659 -532 * 735 150 17 0 chr1 266815386 266815559 -15378105 + GA-rich Low_complexity Low_complexity 1 176 0 566 294 33 11 chr1 266815601 266815781 -15377883 - MLT1F1 LTR MaLR -383 184 1 325 308 11 11 chr1 266815890 266815981 -15377683 - MLT1K LTR MaLR -357 231 141 216 0 0 0 chr1 266817117 266817141 -15376523 + (A)n Simple_repeat Simple_repeat 1 24 0 2345 100 3 0 chr1 266819142 266819451 -15374213 - AluSp SINE Alu -3 310 1 1544 169 52 0 chr1 266819583 266819855 -15373809 + AluJo SINE Alu 12 297 -15 329 316 38 30 chr1 266819938 266820071 -15373593 + L2 LINE L2 3180 3313 0 415 294 151 0 chr1 266820190 266820336 -15373328 + MIR SINE MIR 47 214 -48 2013 146 3 16 chr1 266821039 266821355 -15372309 - AluJo SINE Alu 0 312 1 233 241 0 69 chr1 266821813 266821900 -15371764 + MIR SINE MIR 126 206 -56 240 218 0 0 chr1 266822512 266822567 -15371097 + A-rich Low_complexity Low_complexity 1 55 0 2523 67 3 0 chr1 266822587 266822886 -15370778 + AluY SINE Alu 1 300 -11 814 189 58 146 chr1 266823764 266824024 -15369640 + MER8 DNA MER2_type 1 237 -2 260 243 81 54 chr1 266824727 266824838 -15368826 + MER112 DNA MER1_type 136 249 -11 1355 198 159 12 chr1 266826030 266826456 -15367208 + MER66B LTR ERV1 97 484 -2 462 169 68 33 chr1 266826641 266826861 -15366803 - LTR50 LTR ERVL -535 260 1 928 152 6 25 chr1 266828516 266828674 -15364990 + FRAM SINE Alu 1 155 -21 4697 38 4 0 chr1 266829568 266830127 -15363537 - L1PA4 LINE L1 -11 6144 5584 21 0 0 0 chr1 266830610 266830631 -15363033 + AT_rich Low_complexity Low_complexity 1 21 0 657 147 13 77 chr1 266831131 266831287 -15362377 - L1PA16 LINE L1 0 6166 6021 2017 169 138 7 chr1 266831885 266832292 -15361372 - MER66B LTR ERV1 0 486 27 371 345 40 23 chr1 266832604 266832781 -15360883 - MIR SINE MIR -82 180 1 196 314 0 14 chr1 266833026 266833096 -15360568 - MIR SINE MIR -170 92 24 219 139 0 0 chr1 266833823 266833859 -15359805 + (CA)n Simple_repeat Simple_repeat 1 36 0 391 199 28 2 chr1 266834592 266834692 -15358972 - L1ME LINE L1 -312 5809 5723 440 256 123 40 chr1 266834855 266835082 -15358582 + MIR SINE MIR 8 253 -9 1810 172 0 3 chr1 266835147 266835437 -15358227 - AluJb SINE Alu -23 289 1 238 324 93 14 chr1 266835439 266835578 -15358086 - L2 LINE L2 0 3272 3123 295 302 0 0 chr1 266835688 266835774 -15357890 + MIR SINE MIR 52 137 -125 195 218 36 18 chr1 266836707 266836762 -15356902 - L2 LINE L2 -9 3263 3208 1264 302 110 30 chr1 266837023 266837177 -15356487 - L1MC4 LINE L1 -4 8038 7898 1717 168 34 0 chr1 266837177 266837468 -15356196 - AluJb SINE Alu -7 305 5 1264 302 110 30 chr1 266837468 266838075 -15355589 - L1MC4 LINE L1 -144 7898 7216 2020 247 69 7 chr1 266838089 266838651 -15355013 - L1MC4 LINE L1 -971 7071 6475 1062 155 116 23 chr1 266839213 266839471 -15354193 + MLT1A1 LTR MaLR 5 286 -79 2218 162 0 8 chr1 266839844 266840208 -15353456 - MER46B DNA MER2_type 0 236 1 1122 267 85 22 chr1 266841068 266841480 -15352184 + L2 LINE L2 2528 2965 -349 855 164 0 0 chr1 266841732 266841860 -15351804 + FLAM_C SINE Alu 1 128 -5 1475 179 72 17 chr1 266841867 266842157 -15351507 + AluJo SINE Alu 1 306 -6 845 188 46 18 chr1 266842452 266842679 -15350985 - MIR SINE MIR 0 262 34 39 22 0 0 chr1 266844277 266844323 -15349341 + AT_rich Low_complexity Low_complexity 1 46 0 2194 120 9 20 chr1 266844349 266844458 -15349206 - L1MA5A LINE L1 -10 6929 6820 2286 112 3 0 chr1 266844458 266844761 -15348903 - AluSq SINE Alu -9 304 1 2194 120 9 20 chr1 266844761 266845000 -15348664 - L1MA5A LINE L1 -119 6820 6585 2567 133 52 2 chr1 266845002 266845402 -15348262 + MSTB LTR MaLR 1 420 -6 9518 143 29 17 chr1 266845408 266846174 -15347490 - L1MA5A LINE L1 -352 6587 5832 1953 155 0 7 chr1 266846174 266846470 -15347194 - AluJb SINE Alu -18 294 1 9518 143 29 17 chr1 266846470 266848075 -15345589 - L1MA5A LINE L1 -1107 5832 4190 2629 188 8 23 chr1 266848064 266848537 -15345127 - L1MA5A LINE L1 -6323 466 1 * 21 0 0 0 chr1 266848860 266848881 -15344783 + AT_rich Low_complexity Low_complexity 1 21 0 403 290 99 0 chr1 266849817 266849979 -15343685 + MER5B DNA MER1_type 1 178 0 2255 133 14 63 chr1 266850662 266851107 -15342557 - L1MB3 LINE L1 -2 6181 5759 192 188 42 0 chr1 266851112 266851160 -15342504 - MIR SINE MIR -67 195 146 231 301 60 8 chr1 266851208 266851341 -15342323 - MIR SINE MIR -121 141 2 2905 116 19 9 chr1 266851414 266851838 -15341826 - MSTA LTR MaLR 0 428 1 9700 158 26 10 chr1 266851838 266853462 -15340202 - MSTA-int LTR MaLR 0 1651 1 2856 109 36 2 chr1 266853462 266853876 -15339788 - MSTA LTR MaLR 0 428 1 730 329 67 55 chr1 266854132 266854451 -15339213 + L2 LINE L2 1777 2091 -1223 807 180 0 0 chr1 266854451 266854579 -15339085 - FLAM_C SINE Alu -5 128 1 730 329 67 55 chr1 266854579 266855292 -15338372 + L2 LINE L2 2091 2821 -493 273 319 62 7 chr1 266855555 266855699 -15337965 + L2 LINE L2 3162 3313 0 396 0 0 0 chr1 266855755 266855799 -15337865 + (GA)n Simple_repeat Simple_repeat 1 44 0 335 292 8 42 chr1 266855921 266856041 -15337623 + MIR3 SINE MIR 54 169 -39 325 253 91 10 chr1 266857416 266857515 -15336149 + LTR16C LTR ERVL 385 491 0 1694 177 0 58 chr1 266858641 266858952 -15334712 + AluJo SINE Alu 1 293 -19 258 289 164 0 chr1 266861056 266861184 -15332480 - L2 LINE L2 0 3272 3124 704 133 11 44 chr1 266861305 266861486 -15332178 + T-rich Low_complexity Low_complexity 1 175 0 197 95 0 24 chr1 266861489 266861531 -15332133 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 1605 144 14 60 chr1 266861552 266861836 -15331828 - AluJo SINE Alu -41 271 1 315 315 47 0 chr1 266862082 266862209 -15331455 - MIR SINE MIR -109 153 21 277 329 36 12 chr1 266862342 266862509 -15331155 + MIR SINE MIR 20 190 -72 335 143 11 110 chr1 266863006 266863097 -15330567 + L2 LINE L2 3191 3272 0 358 216 232 0 chr1 266863540 266863665 -15329999 - L1ME4a LINE L1 -12 6109 5956 189 0 0 0 chr1 266864163 266864184 -15329480 + (A)n Simple_repeat Simple_repeat 1 21 0 659 208 8 16 chr1 266864217 266864342 -15329322 - FLAM_A SINE Alu -9 124 1 355 142 9 123 chr1 266864893 266864972 -15328692 - MER33 DNA MER1_type -2261 324 258 2185 134 0 0 chr1 266864972 266865277 -15328387 + AluSx SINE Alu 1 305 -7 355 142 9 123 chr1 266865277 266865303 -15328361 - MER33 DNA MER1_type -2327 258 231 1141 162 98 13 chr1 266865644 266865878 -15327786 - MER33 DNA MER1_type -70 254 1 1776 158 25 3 chr1 266866271 266866556 -15327108 - AluJo SINE Alu -16 296 6 573 289 166 16 chr1 266867588 266868149 -15325515 - L2 LINE L2 0 3313 2660 3230 151 28 23 chr1 266868155 266868765 -15324899 + L1MB3 LINE L1 5570 6182 -1 406 232 82 18 chr1 266869545 266869726 -15323938 - MER20 DNA MER1_type -18 201 1 315 305 216 6 chr1 266869875 266870085 -15323579 - MIR SINE MIR -5 257 5 1540 187 0 38 chr1 266870151 266870466 -15323198 - AluJo SINE Alu -9 303 1 720 195 0 0 chr1 266870475 266870603 -15323061 - FLAM_C SINE Alu -1 132 5 272 328 56 22 chr1 266870822 266871002 -15322662 + MIR SINE MIR 56 241 -21 2190 106 0 0 chr1 266871722 266872035 -15321629 - AluY SINE Alu 0 313 1 1510 188 42 11 chr1 266872332 266872619 -15321045 + AluJo SINE Alu 1 296 -16 1457 203 7 4 chr1 266875575 266875851 -15317813 - AluJo SINE Alu -14 298 22 242 176 0 135 chr1 266876158 266876232 -15317432 - MIR SINE MIR -81 181 118 4904 169 12 65 chr1 266877155 266877900 -15315764 + MER49 LTR ERV1 1 783 61 2548 62 7 0 chr1 266877900 266878208 -15315456 - AluY SINE Alu -1 310 1 4904 169 12 65 chr1 266878208 266878339 -15315325 + MER49 LTR ERV1 783 640 -82 2107 53 0 0 chr1 266878339 266878601 -15315063 + L1PA2 LINE L1 5894 6155 0 4904 169 12 65 chr1 266878601 266878681 -15314983 + MER49 LTR ERV1 639 722 0 448 36 0 0 chr1 266878808 266878864 -15314800 - AluY SINE Alu -254 57 2 1035 165 6 0 chr1 266878873 266879043 -15314621 - MLT1B LTR MaLR -219 171 1 664 285 30 42 chr1 266879343 266879606 -15314058 + MIR SINE MIR 3 262 0 277 250 29 0 chr1 266879608 266879676 -15313988 - MARNA DNA Mariner -475 111 42 26 30 0 0 chr1 266880229 266880262 -15313402 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr1 266881855 266881901 -15311763 + AT_rich Low_complexity Low_complexity 1 46 0 855 112 8 22 chr1 266881997 266882131 -15311533 - AluSq/x SINE Alu -181 132 1 670 234 65 15 chr1 266882586 266882787 -15310877 - L2 LINE L2 0 3313 3103 2283 108 0 0 chr1 266883654 266883950 -15309714 + AluSx SINE Alu 1 296 -16 1596 164 15 11 chr1 266884794 266885062 -15308602 - AluJo SINE Alu -43 269 1 1649 209 11 22 chr1 266885396 266885764 -15307900 - MLT1A1 LTR MaLR -1 364 1 290 26 26 0 chr1 266886155 266886194 -15307470 + (CA)n Simple_repeat Simple_repeat 2 41 0 365 268 134 42 chr1 266887447 266887731 -15305933 - L2 LINE L2 -84 3229 2920 690 220 0 0 chr1 266887893 266888070 -15305594 + CT-rich Low_complexity Low_complexity 4 180 0 233 296 46 84 chr1 266888886 266889043 -15304621 - MIR SINE MIR -71 137 42 2060 70 0 0 chr1 266889953 266890196 -15303468 - AluY SINE Alu -15 296 54 1980 125 60 41 chr1 266890292 266890660 -15303004 + THE1C LTR MaLR 1 375 0 328 363 57 8 chr1 266890752 266891014 -15302650 - MLT1G1-int LTR MaLR -795 576 302 348 267 0 0 chr1 266891036 266891122 -15302542 - MLT1G1-int LTR MaLR -1285 86 1 547 211 8 57 chr1 266891125 266891248 -15302416 - MLT1G1 LTR MaLR -2 593 477 582 180 126 7 chr1 266891253 266891461 -15302203 - MLT1G1 LTR MaLR -185 357 88 * 1845 215 117 48 chr1 266891455 266891799 -15301865 - MLT1F1 LTR MaLR -11 556 162 2565 62 3 0 chr1 266891799 266892106 -15301558 + AluY SINE Alu 2 309 -2 1845 215 117 48 chr1 266892106 266892281 -15301383 - MLT1F1 LTR MaLR -405 162 1 417 237 61 15 chr1 266892281 266892410 -15301254 - MLT1G1 LTR MaLR -455 135 1 206 322 0 33 chr1 266892489 266892579 -15301085 - L2 LINE L2 0 3272 3186 784 207 13 0 chr1 266892588 266892738 -15300926 - FRAM SINE Alu -11 165 14 2130 148 38 3 chr1 266893413 266893752 -15299912 - MSTA LTR MaLR -2 426 76 354 115 19 0 chr1 266893752 266893804 -15299860 - MSTA LTR MaLR -300 128 76 924 102 8 0 chr1 266893804 266893931 -15299733 - MSTA LTR MaLR -300 128 1 589 246 74 33 chr1 266894037 266894252 -15299412 + MIR SINE MIR 12 235 -27 369 337 23 12 chr1 266896227 266896399 -15297265 + MER5B DNA MER1_type 5 178 0 4012 154 22 15 chr1 266896646 266897321 -15296343 + MER54B LTR ERVL 1 680 -113 24 0 0 0 chr1 266897589 266897613 -15296051 + AT_rich Low_complexity Low_complexity 1 24 0 3061 166 22 11 chr1 266898617 266899165 -15294499 - MER89 LTR ERV1 0 559 6 221 295 74 33 chr1 266899969 266900091 -15293573 + MIR SINE MIR 79 205 -57 1706 166 21 17 chr1 266900195 266900484 -15293180 - AluJo SINE Alu -22 290 1 262 363 48 0 chr1 266902298 266902444 -15291220 + MIR SINE MIR 2 154 -108 1656 212 156 44 chr1 266902460 266903069 -15290595 - HsTC2a DNA Tc2 -34 710 34 387 0 0 0 chr1 266903069 266903112 -15290552 + (TAA)n Simple_repeat Simple_repeat 2 44 0 2733 238 84 11 chr1 266903318 266903588 -15290076 - L1ME2 LINE L1 -1 6163 5914 2340 103 7 3 chr1 266903588 266903898 -15289766 + AluSq SINE Alu 1 311 -2 2733 238 84 11 chr1 266903898 266904959 -15288705 - L1ME2 LINE L1 -250 5914 4726 282 202 19 29 chr1 266904989 266905093 -15288571 + CT-rich Low_complexity Low_complexity 4 106 0 564 237 17 0 chr1 266905093 266905211 -15288453 - FAM SINE Alu -1 184 65 1961 160 3 0 chr1 266905221 266905515 -15288149 - AluSx SINE Alu -17 295 1 984 246 46 16 chr1 266905527 266905893 -15287771 - L1ME2 LINE L1 -1499 4647 4271 298 280 92 29 chr1 266905896 266906103 -15287561 - MIR SINE MIR -42 220 1 932 269 66 23 chr1 266908719 266909068 -15284596 - MLT1J LTR MaLR -141 370 7 2217 80 52 7 chr1 266909846 266910132 -15283532 - AluSq SINE Alu -14 299 1 2583 123 53 7 chr1 266910776 266911189 -15282475 - MSTB1 LTR MaLR 0 432 1 790 139 0 8 chr1 266911771 266911900 -15281764 - L1PA15 LINE L1 -5 6160 6033 453 36 0 0 chr1 266913004 266913059 -15280605 + (TCCA)n Simple_repeat Simple_repeat 2 56 0 296 282 71 0 chr1 266913060 266913145 -15280519 - L2 LINE L2 -9 3263 3173 267 296 52 17 chr1 266914215 266914330 -15279334 - MIR SINE MIR -36 226 108 2304 97 0 0 chr1 266915127 266915416 -15278248 - AluSg1 SINE Alu -19 290 2 28 29 0 0 chr1 266915416 266915451 -15278213 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr1 266916711 266916739 -15276925 + AT_rich Low_complexity Low_complexity 1 28 0 291 316 76 12 chr1 266916947 266917118 -15276546 - MIR SINE MIR -72 190 9 264 297 59 8 chr1 266917241 266917359 -15276305 - L1ME LINE L1 -451 5670 5547 1739 149 54 4 chr1 266917506 266917782 -15275882 - AluJb SINE Alu -22 290 1 2751 78 94 10 chr1 266917803 266918216 -15275448 - LTR7 LTR ERV1 -2 448 1 2382 98 50 13 chr1 266918216 266918594 -15275070 - HERVH LTR ERV1 0 7713 7322 1383 148 19 0 chr1 266918592 266918808 -15274856 - HERVH LTR ERV1 -1894 5819 5600 * 8469 105 3 1 chr1 266918809 266919981 -15273683 - HERVH LTR ERV1 -2564 5149 3994 3631 97 0 6 chr1 266920031 266920536 -15273128 - HERVH LTR ERV1 -3720 3993 3492 917 135 20 0 chr1 266920526 266920674 -15272990 - HERVH LTR ERV1 -4423 3290 3140 * 8689 92 0 10 chr1 266920671 266921872 -15271792 - HERVH LTR ERV1 -4729 2984 1796 528 220 42 42 chr1 266921977 266922145 -15271519 - MLT1C LTR MaLR -299 168 1 186 341 56 34 chr1 266922182 266922361 -15271303 - L3 LINE CR1 -24 1553 1371 239 294 94 47 chr1 266922366 266922536 -15271128 - MIR SINE MIR -83 179 2 21 0 0 0 chr1 266922720 266922741 -15270923 + AT_rich Low_complexity Low_complexity 1 21 0 2527 64 0 0 chr1 266922741 266923038 -15270626 + AluY SINE Alu 1 297 -14 2203 102 0 43 chr1 266924378 266924701 -15268963 - AluSc SINE Alu 0 309 1 602 306 28 24 chr1 266925122 266925377 -15268287 + MIR SINE MIR 7 262 0 293 273 176 0 chr1 266925465 266925623 -15268041 - MIR SINE MIR -54 208 33 1625 160 3 38 chr1 266925709 266926028 -15267636 + L1MA9 LINE L1 6000 6307 -5 24 85 0 0 chr1 266926140 266926199 -15267465 + AT_rich Low_complexity Low_complexity 1 59 0 2327 78 3 32 chr1 266926483 266926791 -15266873 + AluSg SINE Alu 1 299 -11 879 154 11 48 chr1 266926843 266926959 -15266705 - MER53 DNA DNA -8 181 73 2877 157 2 24 chr1 266926959 266927468 -15266196 + L1MB3 LINE L1 5686 6183 0 879 154 11 48 chr1 266927468 266927539 -15266125 - MER53 DNA DNA -116 73 1 1061 157 16 26 chr1 266927544 266927735 -15265929 + MER20 DNA MER1_type 31 219 0 207 313 62 0 chr1 266929703 266929767 -15263897 + MIR SINE MIR 83 150 -112 2603 11 0 3 chr1 266931019 266931302 -15262362 - AluYa5 SINE Alu -7 304 23 709 264 173 50 chr1 266931831 266931889 -15261775 + MLT1J LTR MaLR 6 55 -456 2274 101 23 3 chr1 266931889 266932195 -15261469 - AluSq SINE Alu -1 312 1 709 264 173 50 chr1 266932195 266932580 -15261084 + MLT1J LTR MaLR 55 504 -7 244 290 57 40 chr1 266933036 266933160 -15260504 + MLT1K LTR MaLR 210 335 -253 26 0 0 0 chr1 266933317 266933343 -15260321 + AT_rich Low_complexity Low_complexity 1 26 0 644 288 57 54 chr1 266933351 266933758 -15259906 + MLT1J LTR MaLR 104 511 0 501 245 97 7 chr1 266934054 266934209 -15259455 - MER96 DNA MER1_type? 0 175 7 1546 169 15 15 chr1 266934522 266934795 -15258869 + AluJb SINE Alu 38 310 -2 756 126 14 14 chr1 266934811 266934954 -15258710 + GA-rich Low_complexity Low_complexity 1 143 0 37314 61 2 4 chr1 266934961 266940710 -15252954 + L1PA5 LINE L1 596 6334 0 706 207 11 6 chr1 266940531 266940759 -15252905 + GA-rich Low_complexity Low_complexity 1 229 0 * 2311 109 7 0 chr1 266941375 266941677 -15251987 + AluSp SINE Alu 1 304 -9 2599 237 29 17 chr1 266941694 266942057 -15251607 - L1MC4 LINE L1 -2 8040 7683 1594 168 30 50 chr1 266942057 266942360 -15251304 - AluJb SINE Alu -15 297 1 2599 237 29 17 chr1 266942360 266942710 -15250954 - L1MC4 LINE L1 -359 7683 7238 1827 234 94 13 chr1 266942713 266943255 -15250409 - L1MC4 LINE L1 -964 7078 6493 210 259 56 0 chr1 266943356 266943410 -15250254 + polypurine Low_complexity Low_complexity 5 61 0 546 282 93 41 chr1 266943675 266944272 -15249392 + L2 LINE L2 2571 3192 -121 584 225 14 28 chr1 266944321 266944463 -15249201 + MLT1C LTR MaLR 37 176 -291 956 194 12 0 chr1 266944463 266944628 -15249036 + FRAM SINE Alu 1 159 -17 278 130 0 19 chr1 266944641 266944695 -15248969 + (GGA)n Simple_repeat Simple_repeat 3 55 0 630 199 6 99 chr1 266944763 266944924 -15248740 - MER46A DNA MER2_type -90 146 1 417 214 174 0 chr1 266944974 266945072 -15248592 + MLT1C LTR MaLR 272 386 -4 1926 128 0 0 chr1 266945081 266945339 -15248325 - AluSx SINE Alu -15 297 40 24 0 0 0 chr1 266945346 266945370 -15248294 + AT_rich Low_complexity Low_complexity 1 24 0 296 273 9 100 chr1 266945493 266945603 -15248061 - MER91B DNA MER1_type 0 190 91 34 55 0 0 chr1 266945635 266945690 -15247974 + AT_rich Low_complexity Low_complexity 1 55 0 * 219 247 50 15 chr1 266945678 266945766 -15247898 - MER91A DNA MER1_type -95 95 1 25 0 0 0 chr1 266947643 266947668 -15245996 + AT_rich Low_complexity Low_complexity 1 25 0 925 191 38 6 chr1 266948303 266948486 -15245178 + MER5A DNA MER1_type 1 189 0 2058 135 6 3 chr1 266948736 266949047 -15244617 - AluSx SINE Alu 0 312 1 218 356 27 13 chr1 266950480 266950629 -15243035 + L2 LINE L2 2949 3099 -173 202 204 93 19 chr1 266950890 266950944 -15242720 - L2 LINE L2 -16 3256 3199 180 335 38 89 chr1 266951752 266951910 -15241754 - L2 LINE L2 -574 2740 2591 323 280 38 19 chr1 266951922 266952079 -15241585 + L1M4 LINE L1 3608 3767 -2379 339 200 22 22 chr1 266952151 266952241 -15241423 + L1MEc LINE L1 1897 1986 -4410 183 156 0 0 chr1 266952251 266952283 -15241381 + (TA)n Simple_repeat Simple_repeat 2 33 0 1051 217 28 16 chr1 266952391 266952709 -15240955 + L1MEc LINE L1 1964 2285 -4111 240 86 0 0 chr1 266952748 266952783 -15240881 + (TG)n Simple_repeat Simple_repeat 1 35 0 414 273 175 58 chr1 266952798 266952917 -15240747 + L1M4 LINE L1 4711 4815 -1331 306 0 0 0 chr1 266952917 266952951 -15240713 + (CA)n Simple_repeat Simple_repeat 1 34 0 414 273 175 58 chr1 266952951 266953293 -15240371 + L1M4 LINE L1 4815 5226 -920 386 259 57 86 chr1 266953912 266954238 -15239426 + MLT1I LTR MaLR 92 450 0 1781 182 0 7 chr1 266954515 266954817 -15238847 - AluSx SINE Alu -12 300 1 183 80 0 0 chr1 266954903 266954928 -15238736 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 181 375 97 0 chr1 266955023 266955095 -15238569 + L2 LINE L2 3116 3194 -78 366 306 48 0 chr1 266955171 266955295 -15238369 - MIR SINE MIR -74 188 59 1614 194 77 13 chr1 266955927 266956339 -15237325 + MER74A LTR ERVL 2 531 -27 1581 81 54 14 chr1 266956366 266956587 -15237077 - MER30 DNA MER1_type 0 230 1 1183 163 46 28 chr1 266956937 266957219 -15236445 - L1MB3 LINE L1 -3 6180 5894 208 290 0 16 chr1 266957902 266957964 -15235700 + GA-rich Low_complexity Low_complexity 2 62 0 209 306 75 60 chr1 266957988 266958122 -15235542 + MIR SINE MIR 17 152 -56 2245 77 33 13 chr1 266958935 266959234 -15234430 - AluY SINE Alu -6 305 1 444 275 19 31 chr1 266959635 266959795 -15233869 - L1ME3A LINE L1 -222 5948 5791 2149 111 0 4 chr1 266960537 266960964 -15232700 + AluSc SINE Alu 1 426 0 1769 192 79 5 chr1 266961451 266961820 -15231844 + MSTD LTR MaLR 1 396 0 1234 162 5 0 chr1 266962887 266963085 -15230579 - L1PA15 LINE L1 0 6165 5967 2255 102 0 6 chr1 266963086 266963401 -15230263 + L1PA15 LINE L1 5643 5955 -210 208 304 11 33 chr1 266964362 266964454 -15229210 + L2 LINE L2 3208 3297 -16 189 0 0 0 chr1 266964468 266964489 -15229175 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 186 356 52 7 chr1 266965678 266965813 -15227851 + MIR SINE MIR 46 186 -76 1786 166 12 73 chr1 266966066 266966477 -15227187 + MLT1B LTR MaLR 5 390 0 3170 147 80 11 chr1 266966572 266967136 -15226528 + LTR26 LTR ERV1 1 603 0 2516 126 58 22 chr1 266967315 266967728 -15225936 - MSTC LTR MaLR 0 428 1 885 228 98 16 chr1 266968258 266968428 -15225236 + L1ME3A LINE L1 5521 5720 -450 1407 153 31 0 chr1 266968428 266968657 -15225007 + MER46A DNA MER2_type 1 236 0 885 228 98 16 chr1 266968657 266968741 -15224923 + L1ME3A LINE L1 5720 5796 -374 1028 242 70 21 chr1 266968744 266969071 -15224593 + L1ME3A LINE L1 5828 6170 0 503 315 67 64 chr1 266969092 266969610 -15224054 + L2 LINE L2 2751 3271 -1 222 339 32 53 chr1 266969671 266969860 -15223804 - L3b LINE CR1 -196 1387 1203 2597 155 14 9 chr1 266971204 266971630 -15222034 - MSTA LTR MaLR 0 428 1 248 213 85 64 chr1 266972083 266972177 -15221487 - MIR3 SINE MIR -26 182 87 2563 55 0 19 chr1 266972759 266973068 -15220596 - AluY SINE Alu -8 303 1 2209 107 3 13 chr1 266973239 266973538 -15220126 + AluSc SINE Alu 1 296 -13 2043 123 3 30 chr1 266973548 266973849 -15219815 + AluSx SINE Alu 1 293 -19 26 64 0 0 chr1 266976810 266976857 -15216807 + AT_rich Low_complexity Low_complexity 1 47 0 1973 146 133 8 chr1 266977890 266978273 -15215391 + MSTB1 LTR MaLR 1 431 -1 386 115 0 0 chr1 266978274 266978326 -15215338 - Tigger2 DNA MER2_type -267 2451 2400 282 56 0 0 chr1 266978512 266978548 -15215116 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1608 189 59 0 chr1 266978790 266978962 -15214702 - AluJo SINE Alu -7 305 108 387 0 0 0 chr1 266978962 266979005 -15214659 + (TA)n Simple_repeat Simple_repeat 1 43 0 1608 189 59 0 chr1 266979005 266979118 -15214546 - AluJo SINE Alu -204 108 3 420 277 193 14 chr1 266981044 266981257 -15212407 + MIR SINE MIR 11 261 -1 548 348 11 1 chr1 266981280 266981464 -15212200 - MIR3 SINE MIR -1 207 23 857 141 30 10 chr1 266981980 266982159 -15211505 + L1MB3 LINE L1 5890 6070 -101 344 293 78 12 chr1 266982504 266982671 -15210993 + MIR3 SINE MIR 20 197 -11 2359 80 10 13 chr1 266983004 266983316 -15210348 - AluY SINE Alu 0 311 1 2075 136 13 0 chr1 266984167 266984475 -15209189 + AluSx SINE Alu 1 312 0 199 303 197 0 chr1 266984710 266984852 -15208812 + MIR SINE MIR 61 230 -32 211 280 105 28 chr1 266985417 266985560 -15208104 + MIR SINE MIR 59 212 -50 360 167 77 26 chr1 266985594 266985672 -15207992 - MER63 DNA MER1_type -2 1058 977 592 209 43 0 chr1 266985678 266985793 -15207871 - MER63 DNA MER1_type -90 746 1 225 0 0 0 chr1 266986220 266986245 -15207419 + (A)n Simple_repeat Simple_repeat 1 25 0 841 153 0 15 chr1 266986268 266986405 -15207259 + FLAM_C SINE Alu 3 137 -6 1208 153 40 31 chr1 266987194 266987417 -15206247 + MER46A DNA MER2_type 12 236 0 2283 162 6 3 chr1 266988072 266988436 -15205228 + MLT1A1 LTR MaLR 1 365 0 231 246 29 29 chr1 266989340 266989409 -15204255 + MER5B DNA MER1_type 16 84 -94 231 262 215 20 chr1 266990096 266990245 -15203419 - MIR3 SINE MIR -1 207 30 2990 159 21 0 chr1 266990467 266990952 -15202712 + LTR42 LTR ERVL 1 495 0 2283 107 7 0 chr1 266992682 266992982 -15200682 + AluSx SINE Alu 1 302 -10 385 255 92 46 chr1 266993380 266993533 -15200131 - MIR SINE MIR -57 205 46 2123 151 17 9 chr1 266994105 266994450 -15199214 + MER7A DNA MER2_type 1 346 0 380 294 27 7 chr1 266995514 266995660 -15198004 + MIR SINE MIR 28 176 -86 227 186 0 23 chr1 266997011 266997054 -15196610 + CT-rich Low_complexity Low_complexity 3 44 0 196 301 55 0 chr1 266997790 266997863 -15195801 - L2 LINE L2 -56 3216 3140 277 147 15 15 chr1 266998096 266998164 -15195500 + (CA)n Simple_repeat Simple_repeat 2 69 0 520 210 96 42 chr1 266998203 266998278 -15195386 + MIR SINE MIR 74 144 -118 2322 94 3 0 chr1 266998278 266998575 -15195089 + AluSp SINE Alu 1 298 -15 520 210 96 42 chr1 266998575 266998666 -15194998 + MIR SINE MIR 144 249 -13 183 130 37 74 chr1 266998751 266998805 -15194859 - L2 LINE L2 0 3272 3221 551 191 184 0 chr1 266999139 266999275 -15194389 + MER5A DNA MER1_type 27 187 -2 243 309 126 26 chr1 266999762 267000156 -15193508 - L2 LINE L2 0 3272 2813 2113 184 5 15 chr1 267000276 267000667 -15192997 + MLT1B LTR MaLR 1 387 -3 182 319 69 28 chr1 267001420 267001564 -15192100 + L2 LINE L2 285 434 -2880 219 225 0 0 chr1 267002309 267002349 -15191315 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 2584 127 60 65 chr1 267002439 267002741 -15190923 + MER4B LTR ERV1 1 303 -476 2215 78 3 7 chr1 267002741 267003024 -15190640 - AluY SINE Alu 0 311 30 2584 127 60 65 chr1 267003024 267003468 -15190196 + MER4B LTR ERV1 303 712 -67 329 323 111 45 chr1 267003591 267004754 -15188910 + L2 LINE L2 2030 3263 -9 612 256 11 28 chr1 267004756 267004932 -15188732 + MER69A DNA AcHobo 1 173 -4 1530 169 21 62 chr1 267005387 267005712 -15187952 + AluJo SINE Alu 1 312 0 1427 144 13 13 chr1 267006448 267006684 -15186980 - MER46A DNA MER2_type 0 236 1 183 167 136 45 chr1 267006684 267006739 -15186925 + MIR SINE MIR 147 210 -52 389 195 179 12 chr1 267006759 267006893 -15186771 - L1ME1 LINE L1 -18 6148 6021 804 59 0 0 chr1 267006899 267007001 -15186663 + AluY SINE Alu 209 310 -1 1962 221 68 47 chr1 267007052 267007608 -15186056 - L1MD2 LINE L1 -346 6013 5446 2263 154 70 12 chr1 267007664 267008067 -15185597 + MSTB LTR MaLR 1 426 0 220 274 27 14 chr1 267008181 267008254 -15185410 + L2 LINE L2 2808 2881 -433 550 278 24 34 chr1 267008270 267008479 -15185185 - MIR SINE MIR -6 256 50 313 276 63 31 chr1 267008708 267008835 -15184829 + L2 LINE L2 3126 3256 -16 21 0 0 0 chr1 267009292 267009313 -15184351 + AT_rich Low_complexity Low_complexity 1 21 0 2846 75 92 5 chr1 267012049 267012461 -15181203 + LTR7 LTR ERV1 1 448 -2 6699 99 20 4 chr1 267012463 267013844 -15179820 + HERVH LTR ERV1 1 1709 -6004 224 337 21 11 chr1 267015988 267016083 -15177581 - L3b LINE CR1 -88 1495 1400 6003 97 0 2 chr1 267016402 267017256 -15176408 - L1P LINE L1 -2870 3276 2425 219 317 48 0 chr1 267018155 267018259 -15175405 - MIR3 SINE MIR -24 184 76 442 285 39 62 chr1 267018320 267018576 -15175088 - MIR SINE MIR -8 254 5 189 107 0 0 chr1 267019480 267019508 -15174156 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1661 169 17 27 chr1 267019618 267019914 -15173750 - AluJo SINE Alu -9 303 11 368 290 156 5 chr1 267020387 267020573 -15173091 - MIR SINE MIR -41 221 8 392 281 58 35 chr1 267021079 267021250 -15172414 - MIR SINE MIR -65 197 23 257 307 111 51 chr1 267025875 267026078 -15167586 + L2 LINE L2 1962 2152 -1162 2211 204 55 44 chr1 267026078 267026697 -15166967 + MLT1E2 LTR MaLR 1 626 0 257 307 111 51 chr1 267026697 267026864 -15166800 + L2 LINE L2 2152 2354 -960 276 288 152 38 chr1 267026936 267027120 -15166544 + L2 LINE L2 2999 3203 -110 229 266 38 13 chr1 267027150 267027229 -15166435 - MIR SINE MIR -2 260 180 * 394 241 11 0 chr1 267027227 267027314 -15166350 + L2 LINE L2 3226 3313 0 2298 110 0 0 chr1 267027722 267028013 -15165651 - AluSx SINE Alu -19 293 3 188 261 0 0 chr1 267028265 267028311 -15165353 + L2 LINE L2 3227 3272 0 2563 61 0 0 chr1 267029449 267029743 -15163921 - AluSc SINE Alu -15 294 1 21 36 0 0 chr1 267029770 267029798 -15163866 + AT_rich Low_complexity Low_complexity 1 28 0 2133 129 6 3 chr1 267030354 267030665 -15162999 + AluSx SINE Alu 1 312 0 449 279 22 7 chr1 267031010 267031146 -15162518 - Zaphod DNA AcHobo 0 4031 3894 2704 171 73 11 chr1 267031146 267031666 -15161998 - MER74A LTR ERVL 0 558 7 2052 157 0 0 chr1 267031697 267031996 -15161668 - AluSx SINE Alu -13 299 1 247 274 32 0 chr1 267032018 267032080 -15161584 - MER115 DNA AcHobo -152 541 478 889 259 186 11 chr1 267032239 267032609 -15161055 + LTR16A LTR ERVL 16 450 0 560 333 86 9 chr1 267032627 267032745 -15160919 - MER115 DNA AcHobo -347 346 238 22072 90 13 8 chr1 267032745 267036588 -15157076 + L1PA7 LINE L1 2318 6154 0 560 333 86 9 chr1 267036588 267036784 -15156880 - MER115 DNA AcHobo -455 238 8 2505 69 0 3 chr1 267036834 267037140 -15156524 - AluSg SINE Alu -5 305 1 202 253 240 0 chr1 267037919 267037994 -15155670 + MIR SINE MIR 105 197 -65 396 0 0 0 chr1 267038177 267038221 -15155443 + (TG)n Simple_repeat Simple_repeat 1 44 0 232 349 0 0 chr1 267039687 267039753 -15153911 + L2 LINE L2 3232 3297 -16 1819 152 0 69 chr1 267039756 267040091 -15153573 + AluJo SINE Alu 1 312 0 384 59 0 0 chr1 267040651 267040702 -15152962 + (TA)n Simple_repeat Simple_repeat 2 52 0 278 263 140 23 chr1 267040991 267041162 -15152502 + MIR SINE MIR 67 257 -5 1207 255 80 17 chr1 267043171 267043459 -15150205 + L2 LINE L2 2156 2479 -835 2392 89 0 3 chr1 267043459 267043762 -15149902 - AluSq SINE Alu -11 302 1 1207 255 80 17 chr1 267043762 267043888 -15149776 + L2 LINE L2 2479 2596 -718 2188 181 40 31 chr1 267043950 267044404 -15149260 + MER39 LTR ERV1 250 707 0 537 294 167 24 chr1 267044407 267044576 -15149088 + L2 LINE L2 2593 2737 -576 978 280 154 15 chr1 267044576 267045097 -15148567 - MLT1G1 LTR MaLR -2 593 1 537 294 167 24 chr1 267045097 267045519 -15148145 + L2 LINE L2 2737 3277 -36 230 262 0 0 chr1 267045940 267046001 -15147663 + (TAA)n Simple_repeat Simple_repeat 2 62 0 255 222 62 37 chr1 267046585 267046666 -15146998 - MER117 DNA MER1_type -80 117 35 271 271 108 61 chr1 267047984 267048200 -15145464 + MIR SINE MIR 25 246 -16 1776 150 11 0 chr1 267048218 267048524 -15145140 - AluSx SINE Alu 0 309 1 3365 186 40 67 chr1 267048577 267049344 -15144320 - MER21A LTR ERV1 -19 912 166 6295 116 3 0 chr1 267049345 267050436 -15143228 - L1PA16 LINE L1 -1 6165 5070 688 196 0 0 chr1 267050436 267050569 -15143095 + L1 LINE L1 4656 4788 -1358 494 161 23 0 chr1 267050570 267050657 -15143007 - MER39 LTR ERV1 -396 311 223 371 140 0 0 chr1 267050659 267050716 -15142948 - MER21A LTR ERV1 -861 70 14 497 139 13 0 chr1 267051294 267051373 -15142291 + MER116 DNA Mariner 1 80 0 195 266 130 34 chr1 267051418 267051595 -15142069 + L2 LINE L2 2882 3075 -197 1966 192 80 35 chr1 267051645 267052108 -15141556 - LTR2B LTR ERV1 0 490 7 319 247 43 32 chr1 267052113 267052206 -15141458 + L2 LINE L2 3177 3270 -2 226 304 0 0 chr1 267055309 267055365 -15138299 + Charlie7 DNA MER1_type 35 90 -2522 1169 22 0 0 chr1 267056457 267056594 -15137070 + AluYa5/8 SINE Alu 174 310 0 243 323 81 8 chr1 267056778 267056902 -15136762 + MIR SINE MIR 23 155 -107 225 0 0 0 chr1 267057159 267057184 -15136480 + (T)n Simple_repeat Simple_repeat 1 25 0 6483 42 0 0 chr1 267057572 267058332 -15135332 - L1PA5 LINE L1 0 6154 5395 2407 87 0 3 chr1 267061018 267061318 -15132346 - AluSg SINE Alu -11 299 1 2214 91 3 13 chr1 267062791 267063124 -15130540 + AluSc SINE Alu 1 309 0 4413 154 29 33 chr1 267063131 267063957 -15129707 + L1PB4 LINE L1 5333 6155 -1 366 320 40 17 chr1 267064842 267065017 -15128647 - MIR SINE MIR -3 259 81 2421 246 74 91 chr1 267065056 267065182 -15128482 - L1MC5 LINE L1 -51 7910 7783 2669 163 43 18 chr1 267065182 267065672 -15127992 - MLT1D LTR MaLR -2 503 2 2421 246 74 91 chr1 267065672 267066844 -15126820 - L1MC5 LINE L1 -178 7783 6664 3947 119 13 4 chr1 267066844 267067366 -15126298 + MER1A DNA MER1_type 1 527 0 2421 246 74 91 chr1 267067366 267067575 -15126089 - L1MC5 LINE L1 -1297 6664 6453 296 223 38 25 chr1 267067575 267067732 -15125932 + (TA)n Simple_repeat Simple_repeat 1 159 0 389 271 151 16 chr1 267067974 267068225 -15125439 - L1MC4a LINE L1 -1641 6167 5883 233 282 35 0 chr1 267068592 267068677 -15124987 - L1MC4a LINE L1 -361 5801 5714 1708 187 11 0 chr1 267068932 267069216 -15124448 - AluJo SINE Alu -25 287 1 340 214 10 10 chr1 267070286 267070389 -15123275 + CT-rich Low_complexity Low_complexity 2 104 0 297 320 151 53 chr1 267070425 267070822 -15122842 - L2 LINE L2 -48 3265 2830 1355 249 38 88 chr1 267070842 267071389 -15122275 - LTR41 LTR ERVL -17 756 237 212 0 36 0 chr1 267071500 267071528 -15122136 + (TGGGGG)n Simple_repeat Simple_repeat 2 30 0 317 299 0 0 chr1 267071533 267071640 -15122024 + G-rich Low_complexity Low_complexity 1 107 0 762 194 42 0 chr1 267071641 267071785 -15121879 - LTR41 LTR ERVL -611 162 13 669 225 45 34 chr1 267071870 267072048 -15121616 - MIR SINE MIR -51 211 32 273 312 21 53 chr1 267072274 267072463 -15121201 + L3b LINE CR1 1129 1311 -272 202 363 121 51 chr1 267072532 267072863 -15120801 - L2 LINE L2 -22 3250 2897 489 286 103 51 chr1 267072869 267073010 -15120654 + MIR SINE MIR 7 166 -96 2315 98 0 46 chr1 267073010 267073336 -15120328 + AluSq SINE Alu 1 311 -2 489 286 103 51 chr1 267073336 267073428 -15120236 + MIR SINE MIR 166 252 -10 344 311 62 24 chr1 267073946 267074133 -15119531 + MIR SINE MIR 40 233 -29 2137 123 10 0 chr1 267075878 267076170 -15117494 + AluSx SINE Alu 1 295 -17 386 257 186 7 chr1 267076190 267076330 -15117334 + MER5A DNA MER1_type 9 173 -16 2094 193 17 8 chr1 267076363 267076725 -15116939 + MLT1A1 LTR MaLR 1 365 0 428 313 106 10 chr1 267077701 267077909 -15115755 - MIR SINE MIR 0 262 35 495 273 68 11 chr1 267079997 267080173 -15113491 - L1MC4a LINE L1 -2063 5745 5560 275 291 17 51 chr1 267081566 267081683 -15111981 - L2 LINE L2 -5 3267 3155 862 289 19 50 chr1 267082178 267082525 -15111139 - MLT1H1 LTR MaLR -221 334 1 376 229 0 0 chr1 267082540 267082610 -15111054 + MIR SINE MIR 158 227 -35 183 229 0 0 chr1 267082625 267082686 -15110978 + (ATGGTG)n Simple_repeat Simple_repeat 6 66 0 8240 25 0 0 chr1 267083314 267084447 -15109217 - L1PA3 LINE L1 -3 6152 5020 528 308 95 72 chr1 267085937 267086469 -15107195 + L1MDb LINE L1 1000 1510 -4862 233 284 155 9 chr1 267086472 267086588 -15107076 + HAL1b LINE L1 375 507 -841 22 0 0 0 chr1 267086801 267086823 -15106841 + AT_rich Low_complexity Low_complexity 1 22 0 4775 222 102 28 chr1 267087128 267087785 -15105879 + L1ME LINE L1 6 613 -5793 329 0 24 0 chr1 267087785 267087826 -15105838 + (CAA)n Simple_repeat Simple_repeat 2 43 0 4775 222 102 28 chr1 267087826 267089048 -15104616 + L1ME LINE L1 613 2106 -4300 1954 146 7 0 chr1 267089048 267089349 -15104315 - AluSx SINE Alu 0 304 2 4775 222 102 28 chr1 267089349 267089546 -15104118 + L1ME LINE L1 2106 2287 -4119 4770 213 57 7 chr1 267089516 267090567 -15103097 + L1MD2 LINE L1 5054 6198 -421 * 396 0 0 0 chr1 267090567 267090611 -15103053 + (CA)n Simple_repeat Simple_repeat 1 44 0 4770 213 57 7 chr1 267090611 267091056 -15102608 + L1MD2 LINE L1 6198 6619 0 331 330 69 17 chr1 267091103 267091569 -15102095 + L1ME LINE L1 2391 2880 -3526 308 309 26 40 chr1 267091679 267091831 -15101833 + L1ME LINE L1 3032 3181 -3225 276 256 93 58 chr1 267091984 267092555 -15101109 + L1ME LINE L1 3182 3772 -2634 305 256 144 0 chr1 267092584 267092709 -15100955 + L1ME LINE L1 5610 5752 -674 186 174 0 0 chr1 267092819 267092865 -15100799 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 * 915 133 6 11 chr1 267092856 267093037 -15100627 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 195 222 0 0 chr1 267093042 267093087 -15100577 + CT-rich Low_complexity Low_complexity 3 47 0 626 275 76 27 chr1 267093266 267093633 -15100031 - L1MEc LINE L1 -4752 1644 1260 321 277 20 0 chr1 267093754 267093855 -15099809 + L1MEd LINE L1 934 1036 -5083 276 318 19 32 chr1 267093888 267094042 -15099622 + Charlie8 DNA MER1_type 108 259 -2158 10995 95 10 29 chr1 267094182 267095758 -15097906 + THE1C-int LTR MaLR 35 1580 0 2368 128 24 27 chr1 267095758 267096134 -15097530 + THE1C LTR MaLR 1 375 0 201 265 0 0 chr1 267096141 267096190 -15097474 - L2 LINE L2 -61 3211 3163 208 340 62 36 chr1 267096284 267096478 -15097186 - L2 LINE L2 -214 3058 2860 255 150 50 57 chr1 267097309 267097449 -15096215 + (TA)n Simple_repeat Simple_repeat 2 140 0 225 333 14 0 chr1 267097635 267097704 -15095960 + CT-rich Low_complexity Low_complexity 4 73 0 1517 235 57 47 chr1 267098513 267099033 -15094631 - MER39 LTR ERV1 0 707 1 203 158 0 26 chr1 267099033 267099071 -15094593 + CT-rich Low_complexity Low_complexity 1 37 0 656 232 62 76 chr1 267099522 267099746 -15093918 + L1ME1 LINE L1 5928 6148 -18 321 171 162 117 chr1 267100122 267100233 -15093431 - LTR24B LTR ERV1 -499 77 1 212 268 122 61 chr1 267100787 267100869 -15092795 - MIR SINE MIR -58 150 64 2288 168 88 14 chr1 267101420 267102039 -15091625 - MER39 LTR ERV1 -2 705 1 23 54 0 0 chr1 267105355 267105392 -15088272 + AT_rich Low_complexity Low_complexity 1 37 0 185 250 21 0 chr1 267107014 267107062 -15086602 - L2 LINE L2 0 3313 3265 2325 78 7 0 chr1 267108038 267108348 -15085316 + AluSp SINE Alu 1 312 0 248 281 31 73 chr1 267108353 267108449 -15085215 + MIR3 SINE MIR 111 202 -6 369 0 0 0 chr1 267109312 267109353 -15084311 + (CA)n Simple_repeat Simple_repeat 2 42 0 981 289 126 12 chr1 267109676 267110139 -15083525 - MLT1G3 LTR MaLR 0 595 1 2362 88 3 0 chr1 267110287 267110584 -15083080 - AluSc SINE Alu -11 298 1 264 238 75 0 chr1 267111114 267111194 -15082470 - L1ME4a LINE L1 -57 6064 5979 328 228 181 29 chr1 267111197 267111368 -15082296 - L1ME4a LINE L1 -260 5861 5665 340 280 10 0 chr1 267111445 267111545 -15082119 - L1ME4a LINE L1 -458 5663 5563 230 154 185 0 chr1 267111993 267112058 -15081606 - L1MC4 LINE L1 -1353 6689 6613 2216 103 3 0 chr1 267112576 267112868 -15080796 - AluSg SINE Alu -17 293 1 287 192 81 91 chr1 267113477 267113576 -15080088 - L2 LINE L2 -5 3267 3170 2390 38 0 0 chr1 267113576 267113843 -15079821 - AluY SINE Alu -13 298 32 2083 104 50 7 chr1 267114725 267115024 -15078640 - AluSq SINE Alu -1 312 1 333 0 0 0 chr1 267115770 267115807 -15077857 + (TG)n Simple_repeat Simple_repeat 2 38 0 335 254 79 18 chr1 267116503 267116617 -15077047 + MIR SINE MIR 72 192 -70 235 296 99 56 chr1 267116824 267116966 -15076698 - MIR SINE MIR -51 211 64 7602 44 2 0 chr1 267118608 267119916 -15073748 - L1P2 LINE L1 -394 5760 4451 4698 31 2 0 chr1 267119915 267120458 -15073206 + L1P2 LINE L1 3887 4430 -1716 * 278 258 21 11 chr1 267120458 267120551 -15073113 - MIR SINE MIR -49 213 120 349 291 20 40 chr1 267121462 267121613 -15072051 + Charlie7 DNA MER1_type 34 181 -2431 2217 180 46 26 chr1 267121766 267122257 -15071407 - MER67A LTR ERV1 0 661 1 752 230 109 66 chr1 267122302 267122650 -15071014 + Charlie7 DNA MER1_type 1499 1861 -751 280 254 0 55 chr1 267123139 267123249 -15070415 + Charlie7 DNA MER1_type 2509 2612 0 2501 77 3 0 chr1 267123651 267123961 -15069703 + AluSx SINE Alu 1 311 -1 468 324 15 7 chr1 267125243 267125379 -15068285 - MIR SINE MIR -122 140 4 704 180 11 11 chr1 267125751 267125929 -15067735 + GA-rich Low_complexity Low_complexity 3 180 0 231 303 20 99 chr1 267126742 267126849 -15066815 + L2 LINE L2 2637 2730 -584 1459 179 29 39 chr1 267126849 267127157 -15066507 + L1MC1 LINE L1 6028 6332 -1 231 303 20 99 chr1 267127157 267127201 -15066463 + L2 LINE L2 2730 2776 -538 574 299 122 50 chr1 267127234 267127555 -15066109 + L2 LINE L2 2928 3271 -1 192 288 188 25 chr1 267127632 267127712 -15065952 - MIR SINE MIR -62 146 54 27 0 0 0 chr1 267128886 267128913 -15064751 + AT_rich Low_complexity Low_complexity 1 27 0 2174 122 0 10 chr1 267128931 267129243 -15064421 - AluSx SINE Alu -3 309 1 3063 225 52 26 chr1 267129572 267130391 -15063273 - L1MC4a LINE L1 -7 7801 6961 1213 207 147 15 chr1 267130393 267130727 -15062937 + L1MC4a LINE L1 6620 6997 -811 25 0 0 0 chr1 267130775 267130800 -15062864 + AT_rich Low_complexity Low_complexity 1 25 0 414 335 82 18 chr1 267131701 267131871 -15061793 + MIR SINE MIR 6 186 -76 722 324 140 27 chr1 267131954 267132246 -15061418 - ERVL LTR ERVL -821 4833 4575 2817 161 47 48 chr1 267132246 267132805 -15060859 + MER74A LTR ERVL 1 558 0 722 324 140 27 chr1 267132805 267133070 -15060594 - ERVL LTR ERVL -1079 4575 4230 472 271 93 7 chr1 267133113 267133253 -15060411 - ERVL LTR ERVL -1564 4200 4049 1084 206 33 9 chr1 267133294 267133508 -15060156 - MER7C DNA MER2_type -381 221 3 7324 67 11 1 chr1 267133733 267134994 -15058670 + L1PA7 LINE L1 4885 6154 0 649 210 17 17 chr1 267135857 267135976 -15057688 - FRAM SINE Alu -57 119 1 182 292 0 0 chr1 267136278 267136326 -15057338 + L3b LINE CR1 1528 1575 -8 6607 105 12 1 chr1 267136393 267137518 -15056146 + L1PA15 LINE L1 5019 6162 -3 202 272 204 10 chr1 267138222 267138325 -15055339 - L2 LINE L2 -1 3271 3149 2005 137 81 29 chr1 267138378 267138722 -15054942 + THE1B LTR MaLR 1 362 -2 2537 65 0 0 chr1 267139477 267139784 -15053880 - AluY SINE Alu -4 307 1 914 124 15 0 chr1 267140236 267140373 -15053291 - L1MB3 LINE L1 -4 6179 6041 2348 144 76 0 chr1 267140382 267140764 -15052900 - MSTB LTR MaLR -13 413 3 3689 150 21 29 chr1 267141115 267141368 -15052296 + L1MB3 LINE L1 5555 5809 -374 2958 69 36 3 chr1 267141368 267141731 -15051933 - THE1C LTR MaLR 0 375 1 3689 150 21 29 chr1 267141731 267142104 -15051560 + L1MB3 LINE L1 5809 6176 -7 348 258 72 10 chr1 267142209 267142306 -15051358 + MIR SINE MIR 159 261 -1 256 316 36 30 chr1 267142421 267142589 -15051075 - L1ME4a LINE L1 -14 6107 5939 339 176 108 0 chr1 267142626 267142700 -15050964 - L2 LINE L2 -2 3311 3230 229 171 24 0 chr1 267142673 267142714 -15050950 - L2 LINE L2 -349 2964 2923 * 429 280 14 53 chr1 267142736 267142924 -15050740 - L1ME4a LINE L1 -304 5817 5670 259 264 111 0 chr1 267142931 267143003 -15050661 + L2 LINE L2 3193 3272 0 746 245 125 5 chr1 267143088 267143280 -15050384 - MIR SINE MIR -35 227 13 1493 188 105 30 chr1 267143321 267143682 -15049982 + MLT1B LTR MaLR 1 388 -2 3761 117 28 4 chr1 267143757 267143934 -15049730 + L1PB3 LINE L1 5599 5770 -384 270 0 0 0 chr1 267143934 267143964 -15049700 + (TG)n Simple_repeat Simple_repeat 1 30 0 228 35 0 0 chr1 267143965 267143994 -15049670 + (TA)n Simple_repeat Simple_repeat 2 30 0 3761 117 28 4 chr1 267143994 267144355 -15049309 + L1PB3 LINE L1 5769 6152 -2 378 315 131 21 chr1 267144389 267144689 -15048975 - MLT1J2 LTR MaLR -69 377 44 334 191 0 136 chr1 267144891 267145001 -15048663 - MLT1J2-int LTR MaLR -202 1169 1075 2382 194 77 34 chr1 267145179 267145614 -15048050 - MER74A LTR ERVL 0 558 94 261 0 0 0 chr1 267145614 267145643 -15048021 + (TC)n Simple_repeat Simple_repeat 2 30 0 2382 194 77 34 chr1 267145643 267145738 -15047926 - MER74A LTR ERVL -464 94 5 2273 95 0 0 chr1 267145738 267146021 -15047643 + AluSq SINE Alu 1 283 -30 2544 202 34 0 chr1 267146058 267146558 -15047106 + L1MB5 LINE L1 5649 6165 -9 1409 180 4 0 chr1 267147874 267148118 -15045546 - Tigger3(Golem) DNA MER2_type -2 3027 2783 223 299 150 39 chr1 267148627 267148754 -15044910 - MIR3 SINE MIR -54 154 14 277 290 6 49 chr1 267150142 267150304 -15043360 + (CAGTG)n Simple_repeat Simple_repeat 2 156 0 359 199 16 99 chr1 267150331 267150602 -15043062 + (CAGTA)n Simple_repeat Simple_repeat 1 248 0 436 294 20 0 chr1 267150919 267151072 -15042592 - MER103 DNA DNA -7 159 4 2081 117 0 17 chr1 267152488 267152786 -15040878 - AluSx SINE Alu -19 293 1 317 308 123 26 chr1 267152909 267153104 -15040560 - MIR SINE MIR -34 228 15 374 287 129 23 chr1 267153841 267154284 -15039380 + L1M4 LINE L1 4048 4537 -1609 461 201 18 55 chr1 267154444 267154584 -15039080 + L1MC/D LINE L1 5686 5822 -346 208 188 62 0 chr1 267154857 267154905 -15038759 - L2 LINE L2 -8 3305 3255 2244 119 13 46 chr1 267154988 267155376 -15038288 + THE1C LTR MaLR 1 375 0 220 403 22 7 chr1 267155913 267156052 -15037612 - MIR SINE MIR -118 144 4 418 287 70 9 chr1 267156270 267156500 -15037164 - L1ME4a LINE L1 -254 5867 5624 429 192 104 32 chr1 267158760 267158885 -15034779 + L1MEd LINE L1 438 571 -5548 245 300 194 35 chr1 267159660 267160000 -15033664 + L2 LINE L2 1851 2244 -1070 418 335 160 39 chr1 267160098 267160155 -15033509 + L2 LINE L2 2245 2294 -1020 3488 184 84 24 chr1 267160155 267160314 -15033350 - LTR39 LTR ERV1 0 783 635 219 36 0 0 chr1 267160314 267160342 -15033322 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2193 82 7 7 chr1 267160342 267160622 -15033042 - AluSq SINE Alu -33 280 1 3488 184 84 24 chr1 267160622 267161200 -15032464 - LTR39 LTR ERV1 -147 636 1 418 335 160 39 chr1 267161200 267161599 -15032065 + L2 LINE L2 2294 2756 -558 2205 116 0 13 chr1 267161690 267162001 -15031663 - AluSc SINE Alu -2 307 1 1011 297 77 58 chr1 267162139 267162382 -15031282 - L2 LINE L2 -825 2489 2252 1484 191 0 89 chr1 267162382 267162706 -15030958 + AluJo SINE Alu 1 295 -17 1011 297 77 58 chr1 267162706 267163088 -15030576 - L2 LINE L2 -1062 2252 1852 646 224 79 6 chr1 267163109 267163274 -15030390 + MER63A DNA MER1_type 29 205 -5 260 301 75 0 chr1 267163380 267163473 -15030191 - MIR SINE MIR -46 216 117 266 104 0 21 chr1 267164121 267164169 -15029495 + (GGA)n Simple_repeat Simple_repeat 1 47 0 31 0 0 0 chr1 267164239 267164270 -15029394 + AT_rich Low_complexity Low_complexity 1 31 0 252 328 25 0 chr1 267164355 267164477 -15029187 + MARNA DNA Mariner 161 285 -301 240 283 17 0 chr1 267164505 267164565 -15029099 - MIR SINE MIR -37 225 165 341 292 79 22 chr1 267165196 267165374 -15028290 + MARNA DNA Mariner 296 483 -103 1928 148 6 31 chr1 267165574 267165703 -15027961 + AluSx SINE Alu 1 132 -180 207 0 0 0 chr1 267165703 267165726 -15027938 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1928 148 6 31 chr1 267165726 267165913 -15027751 + AluSx SINE Alu 132 309 -3 196 449 9 0 chr1 267166279 267166386 -15027278 + L3 LINE CR1 31 138 -1439 659 257 61 63 chr1 267166537 267166899 -15026765 + L1M4 LINE L1 3778 4138 -2008 273 312 22 26 chr1 267166904 267167135 -15026529 + L1M4 LINE L1 4307 4536 -1610 316 308 44 19 chr1 267168179 267168338 -15025326 + L1ME4a LINE L1 5957 6119 -2 188 233 0 23 chr1 267168526 267168569 -15025095 - L2 LINE L2 -5 3308 3267 340 272 66 52 chr1 267168866 267168917 -15024747 + L2 LINE L2 3171 3220 -93 2144 71 50 3 chr1 267168917 267169199 -15024465 - AluSc SINE Alu -14 295 1 340 272 66 52 chr1 267169199 267169283 -15024381 + L2 LINE L2 3220 3308 -5 474 299 98 49 chr1 267170408 267170652 -15023012 - MIR SINE MIR -5 257 2 846 251 94 4 chr1 267170899 267171154 -15022510 - LTR16C LTR ERVL -10 481 204 424 279 25 13 chr1 267171428 267171586 -15022078 - MER117 DNA MER1_type -36 161 2 190 292 0 0 chr1 267171637 267171685 -15021979 + MIR3 SINE MIR 158 205 -3 * 1161 301 77 7 chr1 267171683 267172101 -15021563 - L3 LINE CR1 -565 1012 566 2051 159 32 53 chr1 267173536 267173971 -15019693 + MSTB LTR MaLR 1 426 0 239 158 26 118 chr1 267174337 267174413 -15019251 - MIR SINE MIR -68 194 126 23 33 0 0 chr1 267175068 267175098 -15018566 + AT_rich Low_complexity Low_complexity 1 30 0 1715 184 7 7 chr1 267175105 267175399 -15018265 - AluJo SINE Alu -18 294 1 256 198 74 12 chr1 267175453 267175534 -15018130 + MER88 LTR ERVL 79 164 -300 * 1077 233 86 41 chr1 267175465 267175928 -15017736 - MER74B LTR ERVL -74 548 65 1687 113 4 0 chr1 267176181 267176410 -15017254 - AluSg SINE Alu -20 290 61 257 260 26 0 chr1 267176567 267176644 -15017020 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 525 257 162 44 chr1 267176968 267177357 -15016307 + Tigger8 DNA MER2_type 132 566 -100 1546 259 48 57 chr1 267178001 267179040 -15014624 + L1ME3 LINE L1 3986 5015 -1131 300 260 95 45 chr1 267179056 267179126 -15014538 + L1ME3 LINE L1 5133 5198 -1020 1967 153 10 0 chr1 267179126 267179426 -15014238 + AluSx SINE Alu 1 303 -9 300 260 95 45 chr1 267179426 267179652 -15014012 + L1ME3 LINE L1 5198 5444 -774 324 281 50 0 chr1 267179781 267179902 -15013762 + L1ME3 LINE L1 5614 5740 -430 620 237 31 23 chr1 267179907 267180166 -15013498 + L1ME3 LINE L1 5797 6160 -2 23 33 0 0 chr1 267180657 267180687 -15012977 + AT_rich Low_complexity Low_complexity 1 30 0 259 364 0 0 chr1 267180812 267180889 -15012775 + MIR SINE MIR 28 104 -104 34 0 0 0 chr1 267180969 267181003 -15012661 + AT_rich Low_complexity Low_complexity 1 34 0 343 167 157 10 chr1 267181134 267181236 -15012428 - L1ME2 LINE L1 -9 6155 6039 11378 165 31 35 chr1 267181254 267182098 -15011566 - L1PB2 LINE L1 -2 6149 5303 1961 138 13 24 chr1 267182098 267182396 -15011268 - AluSx SINE Alu -16 296 2 11378 165 31 35 chr1 267182396 267184195 -15009469 - L1PB2 LINE L1 -848 5303 3498 1696 48 14 0 chr1 267184195 267184402 -15009262 - AluY SINE Alu -16 295 86 11378 165 31 35 chr1 267184402 267184575 -15009089 - L1PB2 LINE L1 -2653 3498 3326 2268 100 0 7 chr1 267184575 267184884 -15008780 - AluSp SINE Alu -6 307 1 11378 165 31 35 chr1 267184884 267185745 -15007919 - L1PB2 LINE L1 -2825 3326 2457 1425 225 100 29 chr1 267185744 267186335 -15007329 - L1MEc LINE L1 -2875 3340 2708 * 496 318 74 14 chr1 267186361 267186578 -15007086 - L1MDa LINE L1 -5825 715 486 1156 245 19 7 chr1 267186582 267186892 -15006772 - L1MDa LINE L1 -6160 380 67 1069 307 53 60 chr1 267186979 267188518 -15005146 - L1MEc LINE L1 -4759 1637 111 411 303 79 58 chr1 267188577 267188660 -15005004 + L1ME4a LINE L1 5554 5634 -487 1659 165 3 41 chr1 267188660 267188975 -15004689 - AluJo SINE Alu -9 303 1 411 303 79 58 chr1 267188975 267189270 -15004394 + L1ME4a LINE L1 5634 5940 -181 1434 114 10 10 chr1 267189387 267189589 -15004075 + AluSx SINE Alu 4 205 -107 646 111 0 11 chr1 267189698 267189788 -15003876 - AluSq/x SINE Alu -189 124 36 26406 51 5 2 chr1 267190859 267195172 -14998492 + L1PA5 LINE L1 1825 6150 -4 235 237 85 0 chr1 267195335 267195394 -14998270 - Tigger3(Golem) DNA MER2_type -2961 68 5 2392 153 2 2 chr1 267195635 267196033 -14997631 - L1PA16 LINE L1 0 6166 5769 614 144 0 0 chr1 267196033 267196137 -14997527 + L1PA16 LINE L1 5645 5748 -418 395 344 122 40 chr1 267196286 267196615 -14997049 - L2 LINE L2 -8 3264 2909 320 219 108 53 chr1 267199563 267199730 -14993934 + MIR SINE MIR 11 191 -60 189 327 0 0 chr1 267199973 267200028 -14993636 + MIR SINE MIR 186 240 -22 249 303 0 0 chr1 267200042 267200108 -14993556 + L2 LINE L2 2475 2540 -774 982 266 104 61 chr1 267200189 267200918 -14992746 + L2 LINE L2 2533 3313 0 189 233 0 0 chr1 267201084 267201127 -14992537 - L2 LINE L2 0 3313 3271 212 270 124 22 chr1 267201336 267201425 -14992239 - L2 LINE L2 -224 3048 2951 240 255 5 65 chr1 267201758 267201942 -14991722 + (CATATA)n Simple_repeat Simple_repeat 1 173 0 229 230 68 0 chr1 267201981 267202055 -14991609 - L1ME LINE L1 -298 5823 5745 270 306 30 13 chr1 267202163 267202288 -14991376 - MIR SINE MIR -38 170 49 506 243 29 43 chr1 267203066 267203206 -14990458 - MIR SINE MIR -78 184 47 2256 131 0 3 chr1 267204089 267204401 -14989263 + AluSp SINE Alu 3 313 0 2307 99 3 0 chr1 267206426 267206729 -14986935 + AluY SINE Alu 1 304 -7 2420 168 28 33 chr1 267206897 267207269 -14986395 - MSTB LTR MaLR 0 426 55 2364 99 3 13 chr1 267207269 267207583 -14986081 - AluSp SINE Alu -2 311 1 2420 168 28 33 chr1 267207583 267207638 -14986026 - MSTB LTR MaLR -371 55 1 232 279 111 70 chr1 267208107 267208279 -14985385 - MIR SINE MIR -33 229 51 4368 72 30 55 chr1 267208653 267209806 -14983858 + MER11A LTR ERVK 1 1266 0 2064 150 0 3 chr1 267210530 267210824 -14982840 - AluSx SINE Alu -19 293 1 3117 181 20 45 chr1 267210828 267211487 -14982177 - L1MC1 LINE L1 -7 6326 5685 889 261 21 25 chr1 267212007 267212287 -14981377 + LTR16A1 LTR ERVL 178 456 -1 343 277 113 86 chr1 267212391 267212806 -14980858 + HAL1 LINE L1 762 1165 -1342 2098 125 0 3 chr1 267212806 267213093 -14980571 + AluSg SINE Alu 1 286 -24 343 277 113 86 chr1 267213093 267213143 -14980521 + HAL1 LINE L1 1165 1212 -1295 1656 138 7 48 chr1 267213143 267213380 -14980284 + L1MA5 LINE L1 6020 6244 -56 2167 135 0 0 chr1 267213380 267213691 -14979973 + AluSx SINE Alu 1 311 -1 1656 138 7 48 chr1 267213691 267213744 -14979920 + L1MA5 LINE L1 6244 6298 -2 343 277 113 86 chr1 267213744 267213960 -14979704 + HAL1 LINE L1 1212 1462 -1045 276 324 49 10 chr1 267214673 267214775 -14978889 - L2 LINE L2 -2 3311 3206 284 296 93 22 chr1 267214776 267215101 -14978563 + L1P LINE L1 3871 4221 -1925 334 289 117 29 chr1 267215162 267215613 -14978051 + L1ME3A LINE L1 4781 5274 -872 789 268 101 35 chr1 267215819 267216245 -14977419 + L1ME3A LINE L1 5502 5955 -215 2134 100 14 0 chr1 267216245 267216557 -14977107 - AluSq SINE Alu 0 316 1 235 203 13 76 chr1 267216763 267216842 -14976822 - MLT1G-int LTR MaLR -1297 74 1 1271 227 109 12 chr1 267216843 267217182 -14976482 - MLT1G LTR MaLR -1 589 218 223 352 11 0 chr1 267217958 267218049 -14975615 + GA-rich Low_complexity Low_complexity 1 92 0 180 0 0 0 chr1 267218636 267218656 -14975008 + (A)n Simple_repeat Simple_repeat 1 20 0 4010 152 38 11 chr1 267218854 267219507 -14974157 + LTR51 LTR ERV1 1 671 0 245 291 13 13 chr1 267219731 267219810 -14973854 - MLT1J1-int LTR MaLR -1655 80 2 667 254 126 26 chr1 267219825 267220175 -14973489 - MLT1J1 LTR MaLR -12 434 50 300 309 47 32 chr1 267220206 267220484 -14973180 - L1ME LINE L1 -625 5539 5258 499 306 98 12 chr1 267221265 267221438 -14972226 - MIR3 SINE MIR -3 205 18 2269 100 0 0 chr1 267222179 267222478 -14971186 + AluSg SINE Alu 1 299 -11 216 0 0 0 chr1 267223721 267223745 -14969919 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2134 131 0 25 chr1 267223761 267224101 -14969563 - AluJo SINE Alu 0 332 1 1601 154 67 11 chr1 267226682 267226967 -14966697 + AluJb SINE Alu 1 301 -11 2157 145 36 22 chr1 267227377 267227736 -14965928 + THE1B LTR MaLR 1 364 0 266 281 234 0 chr1 267227819 267227947 -14965717 - MIR SINE MIR -35 227 70 2292 187 81 118 chr1 267228305 267229060 -14964604 + LTR8A LTR ERV1 1 727 0 338 291 143 11 chr1 267229066 267229248 -14964416 - MIR SINE MIR -24 238 33 557 141 10 0 chr1 267229639 267229738 -14963926 + GA-rich Low_complexity Low_complexity 2 101 0 20853 91 9 21 chr1 267230122 267233152 -14960512 + HERVH LTR ERV1 1 2995 -4718 1007 113 7 0 chr1 267233131 267233281 -14960383 + HERVH LTR ERV1 3140 3290 -4423 * 3397 115 2 6 chr1 267233271 267233775 -14959889 + HERVH LTR ERV1 3492 3993 -3720 4405 145 1 1 chr1 267233777 267234439 -14959225 + HERVH LTR ERV1 4488 5149 -2564 1356 113 18 57 chr1 267234440 267234669 -14958995 + HERVH LTR ERV1 5600 5819 -1894 * 2416 82 47 14 chr1 267234667 267235032 -14958632 + HERVH LTR ERV1 7322 7698 -15 1954 39 0 67 chr1 267236104 267236358 -14957306 - AluY SINE Alu -7 304 68 2770 191 70 28 chr1 267236581 267237192 -14956472 - LTR9B LTR ERV1 0 644 8 2391 154 4 76 chr1 267238162 267238446 -14955218 + L1MB3 LINE L1 5742 5980 -203 1836 112 7 18 chr1 267238446 267238724 -14954940 + AluSq SINE Alu 39 313 0 2391 154 4 76 chr1 267238724 267238914 -14954750 + L1MB3 LINE L1 5980 6182 -1 247 275 70 49 chr1 267239066 267239208 -14954456 + L1ME LINE L1 5675 5819 -302 3942 229 41 14 chr1 267239748 267241007 -14952657 - L1M4 LINE L1 -696 5976 4685 1597 168 13 50 chr1 267241012 267241157 -14952507 + AluJb SINE Alu 6 136 -176 3770 51 0 7 chr1 267241157 267241608 -14952056 + LTR7 LTR ERV1 1 448 -2 1597 168 13 50 chr1 267241608 267241760 -14951904 + AluJb SINE Alu 136 292 -20 6691 233 38 29 chr1 267241761 267244159 -14949505 - L1M4 LINE L1 -1947 4697 2277 1811 124 3 77 chr1 267244164 267244535 -14949129 - MER4A LTR ERV1 0 664 263 610 152 0 10 chr1 267244535 267244634 -14949030 - MER4A LTR ERV1 -566 98 1 4359 246 44 43 chr1 267244690 267246875 -14946789 - L1M4 LINE L1 -4466 2180 8 278 367 31 23 chr1 267247197 267247325 -14946339 + MIR3 SINE MIR 28 156 -52 211 300 56 60 chr1 267247539 267247733 -14945931 + MIR SINE MIR 30 220 -27 337 226 0 0 chr1 267248334 267248396 -14945268 - MER81 DNA DNA 0 114 53 702 219 0 29 chr1 267248396 267248533 -14945131 + FLAM_A SINE Alu 1 133 0 1875 134 22 3 chr1 267248555 267249008 -14944656 + MER61D LTR ERV1 1 501 0 358 200 0 17 chr1 267249008 267249056 -14944608 - MER81 DNA DNA -67 47 1 4094 183 49 18 chr1 267249756 267250494 -14943170 + MER21B LTR ERV1 5 765 -98 34 24 0 0 chr1 267250702 267250743 -14942921 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr1 267250867 267250890 -14942774 + AT_rich Low_complexity Low_complexity 1 23 0 275 331 33 26 chr1 267251597 267251748 -14941916 + L1MC/D LINE L1 5556 5707 -455 238 178 22 0 chr1 267251749 267251794 -14941870 + L1MC/D LINE L1 5749 5794 -2014 2041 126 60 26 chr1 267252031 267252461 -14941203 + MER51B LTR ERV1 1 377 0 449 156 14 0 chr1 267252607 267252703 -14940961 - L1MA7 LINE L1 -460 5831 5751 21 0 0 0 chr1 267252735 267252756 -14940908 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1 267253042 267253064 -14940600 + AT_rich Low_complexity Low_complexity 1 22 0 237 237 0 17 chr1 267253064 267253123 -14940541 + GA-rich Low_complexity Low_complexity 3 60 0 24 53 0 0 chr1 267253264 267253302 -14940362 + AT_rich Low_complexity Low_complexity 1 38 0 287 89 0 125 chr1 267253594 267253650 -14940014 - MER74A LTR ERVL -32 526 478 1995 177 63 36 chr1 267253975 267254416 -14939248 - MER74A LTR ERVL -105 453 1 2109 114 0 0 chr1 267255822 267256119 -14937545 - AluSx SINE Alu -14 298 2 2086 103 0 50 chr1 267256200 267256340 -14937324 + AluSx SINE Alu 1 146 -166 1854 134 17 3 chr1 267256340 267256638 -14937026 + AluSx SINE Alu 5 306 -6 2086 103 0 50 chr1 267256638 267256816 -14936848 + AluSx SINE Alu 146 303 -9 1486 157 14 35 chr1 267256825 267257112 -14936552 + AluJo SINE Alu 1 281 -31 24 0 0 0 chr1 267257115 267257139 -14936525 + AT_rich Low_complexity Low_complexity 1 24 0 1434 157 7 66 chr1 267257753 267258058 -14935606 + AluJo SINE Alu 1 287 -25 428 296 51 59 chr1 267258234 267258487 -14935177 - L2 LINE L2 -667 2647 2397 272 301 58 58 chr1 267258567 267258670 -14934994 + LTR48B LTR ERV1 1 103 -541 231 291 0 0 chr1 267258706 267258761 -14934903 + MER39 LTR ERV1 219 273 -434 * 1146 212 131 37 chr1 267258734 267259103 -14934561 + MER39 LTR ERV1 164 706 -1 231 306 84 55 chr1 267259104 267259414 -14934250 - L2 LINE L2 -1017 2297 1979 1143 245 9 16 chr1 267259766 267260084 -14933580 + MER33 DNA MER1_type 9 324 0 392 326 53 45 chr1 267260587 267260832 -14932832 + MIR SINE MIR 15 261 -1 185 105 0 26 chr1 267261110 267261148 -14932516 + (TCTCC)n Simple_repeat Simple_repeat 2 38 0 2359 43 0 13 chr1 267261785 267262088 -14931576 + AluY SINE Alu 2 300 -11 314 198 117 18 chr1 267262138 267262249 -14931415 + L1MC4a LINE L1 5762 5883 -1925 21 0 0 0 chr1 267262471 267262492 -14931172 + AT_rich Low_complexity Low_complexity 1 21 0 744 181 0 58 chr1 267262498 267262629 -14931035 + L1MB2 LINE L1 6007 6128 -43 2124 85 4 0 chr1 267262629 267262934 -14930730 - AluSp SINE Alu 0 306 1 744 181 0 58 chr1 267262934 267262972 -14930692 + L1MB2 LINE L1 6128 6167 -4 212 208 0 42 chr1 267265059 267265107 -14928557 - MIR SINE MIR -106 156 111 601 288 84 32 chr1 267265222 267265472 -14928192 + MLT1J2 LTR MaLR 188 450 0 246 32 0 0 chr1 267265873 267265904 -14927760 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 503 351 54 8 chr1 267266104 267266343 -14927321 - MIR SINE MIR 0 262 13 212 288 129 25 chr1 267269030 267269193 -14924471 - MER5A DNA MER1_type -6 183 4 1211 188 63 89 chr1 267270204 267270507 -14923157 + AluJb SINE Alu 1 295 -7 24 0 0 0 chr1 267270507 267270531 -14923133 + AT_rich Low_complexity Low_complexity 1 24 0 839 281 43 4 chr1 267270959 267271190 -14922474 + MIR SINE MIR 2 241 -21 279 113 77 36 chr1 267321889 267322057 -14871607 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 257 89 22 0 chr1 267322165 267322210 -14871454 + (TC)n Simple_repeat Simple_repeat 2 47 0 201 94 0 0 chr1 267322316 267322348 -14871316 + (TC)n Simple_repeat Simple_repeat 1 32 0 318 322 68 7 chr1 267322790 267322936 -14870728 - L3 LINE CR1 -102 1475 1321 543 354 77 44 chr1 267323131 267323676 -14869988 - L2 LINE L2 0 3272 2688 1804 157 6 32 chr1 267323676 267323988 -14869676 + AluSx SINE Alu 2 305 -7 543 354 77 44 chr1 267323988 267324206 -14869458 - L2 LINE L2 -584 2688 2479 1887 190 51 0 chr1 267324367 267324698 -14868966 - MER7A DNA MER2_type 0 346 1 2647 189 25 18 chr1 267326953 267327507 -14866157 - MER74A LTR ERVL 0 558 1 261 281 250 21 chr1 267327569 267327665 -14865999 - L2 LINE L2 -5 3267 3150 485 277 169 48 chr1 267328810 267329265 -14864399 - MLT1J LTR MaLR -1 510 1 2344 88 3 3 chr1 267329294 267329590 -14864074 + AluSg1 SINE Alu 1 296 -13 416 316 155 5 chr1 267329627 267329820 -14863844 - MIR SINE MIR 0 262 41 182 284 32 63 chr1 267330372 267330467 -14863197 - MIR SINE MIR -76 186 95 288 298 137 0 chr1 267330866 267331027 -14862637 - MIR SINE MIR 0 262 80 23 54 0 0 chr1 267331090 267331127 -14862537 + AT_rich Low_complexity Low_complexity 1 37 0 294 210 222 0 chr1 267331154 267331235 -14862429 - L2 LINE L2 -5 3267 3169 1058 155 6 0 chr1 267331280 267331441 -14862223 + FRAM SINE Alu 1 162 -14 1332 302 96 42 chr1 267333040 267333877 -14859787 + MER45C DNA AcHobo 72 953 0 601 287 80 32 chr1 267334922 267335389 -14858275 - L1ME LINE L1 -460 5702 5201 2232 99 0 3 chr1 267335389 267335682 -14857982 + AluY SINE Alu 20 311 0 601 287 80 32 chr1 267335682 267335895 -14857769 - L1ME LINE L1 -961 5201 5000 2263 124 3 0 chr1 267336258 267336564 -14857100 - AluSx SINE Alu -5 307 1 199 315 80 71 chr1 267336674 267336912 -14856752 - L2 LINE L2 -674 2640 2401 1224 240 46 41 chr1 267336970 267337336 -14856328 - MLT1A2 LTR MaLR 0 374 7 350 242 19 6 chr1 267337661 267337818 -14855846 + CT-rich Low_complexity Low_complexity 2 160 0 285 339 58 33 chr1 267337848 267338090 -14855574 + MLT1L LTR MaLR 368 615 0 2399 86 0 10 chr1 267338964 267339267 -14854397 - AluSg SINE Alu -10 300 1 199 273 79 65 chr1 267339295 267339434 -14854230 - L2 LINE L2 -1384 1930 1790 2307 108 3 0 chr1 267341033 267341338 -14852326 + AluSx SINE Alu 1 306 -6 249 259 86 0 chr1 267341513 267341571 -14852093 + L2 LINE L2 3185 3247 -25 1926 175 0 3 chr1 267342260 267342563 -14851101 + AluJo SINE Alu 3 304 -8 2074 95 53 3 chr1 267342569 267342852 -14850812 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr1 267344201 267344222 -14849442 + AT_rich Low_complexity Low_complexity 1 21 0 3815 143 36 5 chr1 267344223 267344889 -14848775 - L1MB3 LINE L1 -3 6180 5494 2079 124 0 17 chr1 267345019 267345372 -14848292 + AluSx SINE Alu 1 312 0 2797 108 37 16 chr1 267345563 267345998 -14847666 + L1PB2 LINE L1 5706 6149 -2 261 288 61 38 chr1 267349224 267349356 -14844308 + L2 LINE L2 2479 2613 -701 358 221 184 22 chr1 267349412 267349548 -14844116 + MER58C DNA MER1_type 44 201 -14 459 292 146 36 chr1 267349570 267349851 -14843813 + L2 LINE L2 2660 2971 -343 319 272 140 7 chr1 267349848 267349984 -14843680 + MIR SINE MIR 108 261 -1 * 285 333 20 10 chr1 267350051 267350153 -14843511 + L2 LINE L2 3134 3236 -36 2154 86 4 0 chr1 267350574 267350842 -14842822 - AluSp SINE Alu -14 299 31 23 0 0 0 chr1 267350855 267350878 -14842786 + AT_rich Low_complexity Low_complexity 1 23 0 233 327 80 31 chr1 267350884 267351046 -14842618 + MIR SINE MIR 90 259 -3 1459 281 134 65 chr1 267353472 267354432 -14839232 + L2 LINE L2 157 1260 -2054 577 225 9 0 chr1 267354432 267354543 -14839121 - MER81 DNA DNA 0 114 3 1459 281 134 65 chr1 267354543 267355096 -14838568 + L2 LINE L2 1260 1774 -1540 219 310 49 25 chr1 267358374 267358521 -14835143 - MER5A DNA MER1_type -28 161 1 363 299 10 0 chr1 267358597 267358694 -14834970 - L2 LINE L2 -2 3270 3173 409 312 59 21 chr1 267360846 267361032 -14832632 - MIR SINE MIR -24 238 46 202 338 25 12 chr1 267361785 267361865 -14831799 + MIR SINE MIR 16 96 -112 853 189 24 12 chr1 267362269 267362433 -14831231 + AluJo SINE Alu 122 287 -25 39 22 0 0 chr1 267362433 267362479 -14831185 + AT_rich Low_complexity Low_complexity 1 46 0 347 233 47 12 chr1 267362508 267362765 -14830899 + (TTATA)n Simple_repeat Simple_repeat 1 265 0 2935 9 0 6 chr1 267362930 267363249 -14830415 - AluYb8 SINE Alu -1 317 1 212 163 20 20 chr1 267363323 267363372 -14830292 - MIR SINE MIR -68 140 92 250 274 24 0 chr1 267364332 267364416 -14829248 - MIR SINE MIR -29 233 148 33 0 0 0 chr1 267364416 267364449 -14829215 + AT_rich Low_complexity Low_complexity 1 33 0 2245 98 0 0 chr1 267364449 267364734 -14828930 - AluSg SINE Alu -25 285 1 2033 197 62 2 chr1 267364773 267365205 -14828459 + L1 LINE L1 4703 5160 -986 837 300 113 33 chr1 267365396 267365872 -14827792 + L2 LINE L2 2614 3156 -157 2923 140 15 61 chr1 267365872 267366380 -14827284 - L1MA5 LINE L1 0 6300 5821 279 0 0 0 chr1 267366380 267366411 -14827253 + (TG)n Simple_repeat Simple_repeat 2 32 0 2923 140 15 61 chr1 267366411 267366489 -14827175 - L1MA5 LINE L1 -479 5821 5741 837 300 113 33 chr1 267366489 267366661 -14827003 + L2 LINE L2 3156 3313 0 636 288 89 44 chr1 267369211 267369390 -14824274 - L1MEd LINE L1 -4573 1737 1568 5614 128 17 10 chr1 267369390 267370076 -14823588 - L1PA16 LINE L1 -9 6157 5476 2053 130 7 13 chr1 267370076 267370377 -14823287 - AluSx SINE Alu -13 299 1 5614 128 17 10 chr1 267370377 267370977 -14822687 - L1PA16 LINE L1 -690 5476 4882 636 288 89 44 chr1 267370977 267371565 -14822099 - L1MEd LINE L1 -4742 1568 904 230 275 8 58 chr1 267371734 267371854 -14821810 + L2 LINE L2 3200 3313 0 504 257 50 75 chr1 267372477 267372718 -14820946 - MER102a DNA MER1_type -4 326 92 381 323 63 19 chr1 267372880 267373038 -14820626 + L2 LINE L2 2223 2387 -927 231 154 39 19 chr1 267373053 267373105 -14820559 + MIR SINE MIR 113 165 -97 258 368 183 12 chr1 267374124 267374622 -14819042 + L2 LINE L2 2148 2730 -584 1023 243 16 49 chr1 267374684 267375071 -14818593 + L1M4 LINE L1 2247 2620 -3526 669 162 78 42 chr1 267375541 267375708 -14817956 - MIR SINE MIR 0 262 90 35 41 0 0 chr1 267376668 267376717 -14816947 + AT_rich Low_complexity Low_complexity 1 49 0 413 225 0 0 chr1 267377458 267377547 -14816117 - L1MA6 LINE L1 -3 6297 6209 245 305 136 28 chr1 267377698 267377875 -14815789 - MIR SINE MIR -42 220 25 194 388 37 7 chr1 267378736 267378871 -14814793 - MIR SINE MIR -77 131 16 321 272 40 8 chr1 267379214 267379339 -14814325 + MIR SINE MIR 86 214 -48 424 271 125 0 chr1 267379530 267379674 -14813990 + MIR SINE MIR 29 190 -72 206 406 56 0 chr1 267379902 267380099 -14813565 + L3b LINE CR1 1178 1385 -198 262 316 118 0 chr1 267380880 267381016 -14812648 + L2 LINE L2 3160 3311 -2 3107 129 26 0 chr1 267381032 267381527 -14812137 + L1PA16 LINE L1 5659 6166 0 342 0 0 0 chr1 267382730 267382768 -14810896 + (A)n Simple_repeat Simple_repeat 1 38 0 1607 213 92 39 chr1 267383878 267384366 -14809298 + MLT1E3 LTR MaLR 3 616 -8 406 292 22 15 chr1 267384681 267384818 -14808846 - L1ME LINE L1 -5896 174 37 252 337 42 32 chr1 267384975 267385070 -14808594 - L2 LINE L2 -38 3234 3139 184 351 18 18 chr1 267385076 267385187 -14808477 - MIR SINE MIR -128 134 24 387 244 42 17 chr1 267385239 267385358 -14808306 - L2 LINE L2 0 3313 3192 2228 114 0 0 chr1 267385695 267385985 -14807679 + AluSc SINE Alu 1 290 -19 194 338 44 7 chr1 267387426 267387562 -14806102 + L2 LINE L2 2567 2707 -607 202 344 103 10 chr1 267387680 267387752 -14805912 - L2 LINE L2 -657 2657 2593 288 0 0 0 chr1 267387752 267387784 -14805880 + (CA)n Simple_repeat Simple_repeat 1 32 0 202 344 103 10 chr1 267387784 267387906 -14805758 - L2 LINE L2 -721 2593 2445 253 191 48 16 chr1 267388153 267388216 -14805448 - MLT1G1 LTR MaLR -15 580 516 806 224 26 4 chr1 267388407 267388602 -14805062 - MLT1H LTR MaLR -309 240 1 1228 190 197 36 chr1 267388840 267389232 -14804432 + MSTB2 LTR MaLR 1 360 -4 4413 87 113 2 chr1 267389412 267390031 -14803633 - LTR12 LTR ERV1 0 688 1 546 339 17 4 chr1 267390716 267390946 -14802718 - MIR SINE MIR -28 234 2 216 67 0 0 chr1 267391021 267391051 -14802613 + (CA)n Simple_repeat Simple_repeat 1 30 0 2005 116 0 4 chr1 267391221 267391498 -14802166 + AluSc SINE Alu 27 302 -7 1988 129 10 19 chr1 267391653 267391963 -14801701 + AluSx SINE Alu 1 307 -5 1854 114 50 64 chr1 267393033 267393402 -14800262 + MLT2D LTR ERVL 1 466 -54 258 139 47 0 chr1 267393457 267393500 -14800164 + MLT2C1 LTR ERVL 350 394 -3 347 227 80 85 chr1 267393892 267394068 -14799596 - MLT1B LTR MaLR 0 549 375 408 222 0 0 chr1 267395638 267395746 -14797918 + (CA)n Simple_repeat Simple_repeat 1 108 0 297 0 0 0 chr1 267395814 267395847 -14797817 + (GA)n Simple_repeat Simple_repeat 2 34 0 513 299 6 12 chr1 267396880 267397047 -14796617 - MER5A DNA MER1_type -1 188 23 1467 143 81 48 chr1 267397143 267397415 -14796249 + Tigger2a DNA MER2_type 1 281 -153 1404 141 95 12 chr1 267397416 267397658 -14796006 + Tigger2 DNA MER2_type 2456 2717 -1 825 227 28 6 chr1 267399602 267399778 -14793886 + MLT1A1 LTR MaLR 140 319 -46 237 178 0 0 chr1 267399779 267399824 -14793840 + GA-rich Low_complexity Low_complexity 2 46 0 257 298 18 19 chr1 267399824 267399944 -14793720 - MIR SINE MIR -102 106 11 1654 179 20 88 chr1 267400127 267400523 -14793141 - MLT1B LTR MaLR -21 369 1 2355 88 0 0 chr1 267400807 267401101 -14792563 - AluY SINE Alu -17 294 1 658 178 91 81 chr1 267403002 267403199 -14790465 - MER105 DNA DNA -1 203 5 805 162 47 68 chr1 267404065 267404256 -14789408 - MER53 DNA DNA 0 189 3 2058 87 91 0 chr1 267404555 267404830 -14788834 - AluY SINE Alu -11 300 1 4544 94 27 60 chr1 267405138 267406032 -14787632 + SVA Other Other 195 868 -655 6533 64 33 45 chr1 267406337 267407302 -14786362 + SVA Other Other 433 1386 0 180 0 0 0 chr1 267407981 267408001 -14785663 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 420 272 4 28 chr1 267408790 267409049 -14784615 + C-rich Low_complexity Low_complexity 1 252 0 692 255 55 128 chr1 267410667 267411252 -14782412 - MER34 LTR ERV1 0 542 1 2228 168 58 17 chr1 267411658 267412069 -14781595 + MSTC LTR MaLR 1 428 0 788 150 15 8 chr1 267415110 267415243 -14778421 - AluJo SINE Alu -178 134 1 2467 58 3 0 chr1 267416081 267416372 -14777292 - AluY SINE Alu -7 304 13 252 258 21 11 chr1 267416577 267416670 -14776994 + MIR SINE MIR 120 213 -49 4661 33 2 0 chr1 267416670 267417212 -14776452 - L1PA5 LINE L1 -1716 4430 3888 7538 53 5 0 chr1 267417212 267418909 -14774755 + L1PA5 LINE L1 4451 6152 -2 381 253 0 0 chr1 267419098 267419173 -14774491 - FRAM/FAM SINE Alu -97 78 4 2282 121 105 8 chr1 267419225 267419615 -14774049 - MSTA LTR MaLR 0 428 1 452 306 27 7 chr1 267421398 267421569 -14772095 + MIR SINE MIR 30 205 -57 2021 121 7 24 chr1 267422108 267422417 -14771247 - AluSx SINE Alu 0 304 1 805 181 0 0 chr1 267422454 267422581 -14771083 + FLAM_C SINE Alu 1 127 -16 389 243 62 14 chr1 267424691 267424835 -14768829 - MER115 DNA AcHobo -12 681 531 4175 183 63 10 chr1 267424836 267425906 -14767758 + L1MB7 LINE L1 5037 6165 -19 815 286 81 13 chr1 267425906 267426334 -14767330 - MER115 DNA AcHobo -148 545 50 601 283 4 47 chr1 267428963 267429196 -14764468 + MIR SINE MIR 14 236 -26 509 309 64 5 chr1 267429930 267430134 -14763530 + MIR SINE MIR 4 219 -43 2844 269 204 46 chr1 267430222 267430573 -14763091 - L2 LINE L2 -15 3298 3004 3389 166 2 0 chr1 267430573 267431103 -14762561 + LTR26B LTR ERV1 1 531 0 2844 269 204 46 chr1 267431103 267433171 -14760493 - L2 LINE L2 -309 3004 375 381 43 0 0 chr1 267433171 267433218 -14760446 + (CA)n Simple_repeat Simple_repeat 2 48 0 2844 269 204 46 chr1 267433218 267433566 -14760098 - L2 LINE L2 -2938 375 83 700 283 17 22 chr1 267435627 267435857 -14757807 - MIR SINE MIR -28 234 6 189 348 122 9 chr1 267436468 267436583 -14757081 + MIR3 SINE MIR 33 160 -48 353 305 137 0 chr1 267436645 267436776 -14756888 + MER117 DNA MER1_type 9 157 -40 1986 124 10 10 chr1 267437807 267438105 -14755559 + AluSg SINE Alu 1 298 -12 1657 158 3 71 chr1 267438346 267438657 -14755007 + AluJo SINE Alu 1 290 -22 3770 172 31 39 chr1 267438899 267439712 -14753952 + L1MB8 LINE L1 5373 6178 0 278 271 78 36 chr1 267439877 267440043 -14753621 + L1MC4a LINE L1 4903 5075 -1071 676 304 107 42 chr1 267440353 267440588 -14753076 + L1MC4a LINE L1 5323 5541 -2267 2559 74 0 0 chr1 267440588 267440899 -14752765 + AluY SINE Alu 1 311 0 676 304 107 42 chr1 267440899 267441205 -14752459 + L1MC4a LINE L1 5541 5899 -1909 287 216 116 37 chr1 267445171 267445361 -14748303 - L1MC/D LINE L1 -2530 5465 5261 946 243 104 71 chr1 267446047 267446499 -14747165 + MLT1H LTR MaLR 79 545 -4 233 279 53 22 chr1 267449693 267449804 -14743860 - MIR3 SINE MIR -1 207 91 192 216 21 113 chr1 267451524 267451621 -14742043 - MIR3 SINE MIR -25 183 96 185 250 287 19 chr1 267451781 267451889 -14741775 - MIR SINE MIR -56 152 16 436 279 205 12 chr1 267455492 267455746 -14737918 - L2 LINE L2 -13 3300 2998 2467 144 58 19 chr1 267455990 267456400 -14737264 + MSTB LTR MaLR 1 426 0 2282 106 0 3 chr1 267456633 267456935 -14736729 + AluSq SINE Alu 1 301 -12 2442 71 0 0 chr1 267457147 267457441 -14736223 + AluY SINE Alu 1 294 -17 2180 174 8 11 chr1 267459552 267459919 -14733745 + MER47B DNA MER2_type 52 417 -1 3306 131 57 25 chr1 267460333 267460897 -14732767 + L1MC1 LINE L1 5747 6328 -5 252 0 0 0 chr1 267460916 267460944 -14732720 + (A)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr1 267462052 267462075 -14731589 + AT_rich Low_complexity Low_complexity 1 23 0 2254 105 0 0 chr1 267462972 267463266 -14730398 + AluY SINE Alu 1 294 -17 336 304 93 25 chr1 267464075 267464236 -14729428 + MIR3 SINE MIR 14 185 -23 507 311 56 5 chr1 267464576 267464772 -14728892 - MIR SINE MIR -20 242 37 189 0 0 0 chr1 267464944 267464965 -14728699 + (T)n Simple_repeat Simple_repeat 1 21 0 190 329 12 24 chr1 267466861 267466946 -14726718 - L2 LINE L2 -275 2997 2914 903 252 82 108 chr1 267469312 267470107 -14723557 + L1ME3A LINE L1 5308 6081 -81 784 248 61 0 chr1 267470438 267470636 -14723028 + MIR SINE MIR 48 257 -5 461 252 43 25 chr1 267471316 267471594 -14722070 - L1MC4 LINE L1 -4 8038 7702 329 274 57 32 chr1 267472777 267472901 -14720763 - L2 LINE L2 -1 3271 3145 252 355 0 0 chr1 267477648 267477710 -14715954 + MIR SINE MIR 32 93 -115 2470 84 0 0 chr1 267478860 267479170 -14714494 + AluSg SINE Alu 1 310 0 208 277 0 0 chr1 267480861 267480944 -14712720 + (TTAAA)n Simple_repeat Simple_repeat 4 86 0 597 217 168 25 chr1 267481211 267481414 -14712250 - MIR SINE MIR -10 252 21 21 0 0 0 chr1 267482801 267482822 -14710842 + AT_rich Low_complexity Low_complexity 1 21 0 180 333 103 0 chr1 267482825 267482903 -14710761 - MIR SINE MIR -97 165 80 532 239 80 0 chr1 267482982 267483120 -14710544 + L1MA10 LINE L1 6185 6333 -1 1548 149 118 9 chr1 267483539 267483888 -14709776 + Charlie5 DNA MER1_type 2234 2620 0 2475 70 0 0 chr1 267485828 267486129 -14707535 + AluY SINE Alu 1 301 -10 566 283 48 45 chr1 267486186 267486522 -14707142 + HAL1 LINE L1 1246 1582 -925 306 299 176 11 chr1 267490135 267490322 -14703342 - MIR SINE MIR -25 237 20 272 337 43 0 chr1 267491532 267491624 -14702040 + L2 LINE L2 3177 3272 0 3054 138 29 12 chr1 267491892 267491990 -14701674 + L1PA15 LINE L1 5679 5774 -391 2358 47 0 100 chr1 267491990 267492329 -14701335 + AluY SINE Alu 1 305 -6 3054 138 29 12 chr1 267492329 267492709 -14700955 + L1PA15 LINE L1 5774 6165 0 260 284 0 0 chr1 267494043 267494110 -14699554 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 27 0 0 0 chr1 267495429 267495456 -14698208 + AT_rich Low_complexity Low_complexity 1 27 0 807 215 124 0 chr1 267495767 267495953 -14697711 - MER3 DNA MER1_type 0 209 1 1864 172 0 0 chr1 267496100 267496403 -14697261 - AluJb SINE Alu -9 303 1 553 226 108 32 chr1 267496454 267496640 -14697024 - MIR SINE MIR -45 217 18 1007 198 11 6 chr1 267499608 267499785 -14693879 - MER45A DNA AcHobo 0 178 1 435 149 0 0 chr1 267502076 267502150 -14691514 + (CA)n Simple_repeat Simple_repeat 2 75 0 2059 149 27 57 chr1 267502262 267502664 -14691000 + MLT1B LTR MaLR 1 390 0 2490 77 0 3 chr1 267503099 267503411 -14690253 + AluY SINE Alu 1 311 0 500 251 68 39 chr1 267504965 267505172 -14688492 + MIR SINE MIR 1 213 -49 449 301 33 38 chr1 267507208 267507391 -14686273 - MIR SINE MIR -34 228 47 188 224 0 52 chr1 267508759 267508817 -14684847 + L2 LINE L2 2929 2983 -330 287 353 59 0 chr1 267508922 267509058 -14684606 + L2 LINE L2 3170 3313 0 1354 157 27 4 chr1 267511117 267511378 -14682286 + L1MA4 LINE L1 6034 6300 0 270 269 168 26 chr1 267511779 267511975 -14681689 + L2 LINE L2 2792 3013 -300 253 240 0 0 chr1 267513967 267514017 -14679647 - MIR SINE MIR -34 228 179 182 37 37 0 chr1 267514033 267514060 -14679604 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 387 274 10 20 chr1 267514060 267514162 -14679502 - L2 LINE L2 -13 3300 3200 185 225 0 0 chr1 267515173 267515213 -14678451 - L2 LINE L2 -1 3312 3273 2396 121 99 9 chr1 267515893 267516347 -14677317 + Tigger3(Golem) DNA MER2_type 2535 3029 0 701 277 24 5 chr1 267517019 267517225 -14676439 + L1ME1 LINE L1 5945 6154 -12 305 299 51 38 chr1 267517869 267518026 -14675638 + L2 LINE L2 2942 3100 -172 210 274 14 55 chr1 267518009 267518082 -14675582 + L2 LINE L2 3201 3270 -2 * 1577 169 62 81 chr1 267518331 267518827 -14674837 - MLT1D LTR MaLR -16 489 3 211 236 69 69 chr1 267518847 267518919 -14674745 - L2 LINE L2 0 3313 3242 9842 122 24 73 chr1 267518998 267519882 -14673782 + Tigger1 DNA MER2_type 371 1297 -1121 981 67 0 0 chr1 267519882 267520002 -14673662 - AluY SINE Alu -17 294 175 9842 122 24 73 chr1 267520002 267520950 -14672714 + Tigger1 DNA MER2_type 1297 2226 -192 1423 74 0 0 chr1 267520950 267521125 -14672539 - AluY SINE Alu -5 306 132 766 194 68 11 chr1 267521125 267521316 -14672348 + Tigger1 DNA MER2_type 2216 2417 -1 485 305 267 6 chr1 267521360 267521675 -14671989 - HAL1 LINE L1 -1817 690 294 307 277 46 15 chr1 267521827 267521957 -14671707 - HAL1 LINE L1 -2373 134 1 232 315 0 11 chr1 267521999 267522088 -14671576 + MIR SINE MIR 43 130 -132 1644 173 0 36 chr1 267523808 267524137 -14669527 + AluSx SINE Alu 1 312 0 2137 120 3 0 chr1 267524156 267524457 -14669207 + AluSx SINE Alu 1 302 -10 465 244 147 0 chr1 267524656 267524812 -14668852 - MIR SINE MIR -56 206 28 277 233 147 29 chr1 267526172 267526332 -14667332 - MIR SINE MIR -20 242 33 2481 190 57 13 chr1 267526797 267527408 -14666256 - L1MC3 LINE L1 -12 7773 7136 2318 88 0 3 chr1 267528709 267529006 -14664658 + AluSx SINE Alu 1 296 -16 728 215 128 47 chr1 267529943 267530264 -14663400 + MER7A DNA MER2_type 1 345 -1 5331 96 63 0 chr1 267531651 267532713 -14660951 + L1PA8A LINE L1 5017 6130 -1 317 300 108 8 chr1 267532995 267533125 -14660539 + L3b LINE CR1 1408 1550 -33 189 333 78 31 chr1 267535832 267535961 -14657703 + L2 LINE L2 3138 3272 0 1625 169 17 37 chr1 267537656 267537951 -14655713 + AluJo SINE Alu 1 289 -23 315 282 282 12 chr1 267538143 267538313 -14655351 + MLT1K LTR MaLR 2 217 -371 278 326 197 47 chr1 267538387 267538773 -14654891 + L2 LINE L2 2829 3272 0 485 289 223 23 chr1 267541656 267542141 -14651523 + L2 LINE L2 2067 2648 -666 423 217 127 25 chr1 267542550 267542707 -14650957 + MIR SINE MIR 47 219 -43 377 305 124 87 chr1 267544207 267544689 -14648975 + L1MC4a LINE L1 5407 5762 -359 241 277 58 7 chr1 267544717 267544854 -14648810 + L1ME4a LINE L1 5955 6098 -23 2144 99 0 62 chr1 267545166 267545488 -14648176 - AluSx SINE Alu -10 302 1 456 19 0 0 chr1 267547204 267547257 -14646407 + (TG)n Simple_repeat Simple_repeat 2 54 0 299 203 25 38 chr1 267548875 267548954 -14644710 - MIR3 SINE MIR -18 190 113 359 116 58 0 chr1 267550314 267550383 -14643281 - L1PA16 LINE L1 -1 6165 6093 366 23 0 0 chr1 267554983 267555026 -14638638 + (CA)n Simple_repeat Simple_repeat 2 44 0 2218 108 3 0 chr1 267555028 267555316 -14638348 - AluSx SINE Alu -23 289 1 394 394 9 25 chr1 267556950 267557265 -14636399 + L2 LINE L2 2553 2862 -452 658 191 30 130 chr1 267558901 267559132 -14634532 + MER3 DNA MER1_type 2 209 0 1114 174 6 0 chr1 267559401 267559573 -14634091 - FAM SINE Alu -2 173 1 1930 135 20 10 chr1 267559719 267560022 -14633642 + MSTA-int LTR MaLR 1275 1580 0 1897 158 171 8 chr1 267560022 267560390 -14633274 + MSTA LTR MaLR 1 428 0 517 244 135 52 chr1 267561719 267561949 -14631715 - L3 LINE CR1 -459 1118 870 2486 63 0 7 chr1 267562345 267562645 -14631019 + AluY SINE Alu 1 298 -13 632 271 0 7 chr1 267562734 267562874 -14630790 + Tigger3(Golem) DNA MER2_type 7 145 -2884 1712 155 67 29 chr1 267563290 267563606 -14630058 - MER1B DNA MER1_type 0 339 12 1108 169 5 5 chr1 267564676 267564860 -14628804 - FRAM SINE Alu 0 176 1 216 0 0 0 chr1 267565035 267565059 -14628605 + (TA)n Simple_repeat Simple_repeat 1 24 0 191 393 27 36 chr1 267565228 267565340 -14628324 - MIR SINE MIR -60 148 38 268 267 198 26 chr1 267565895 267566011 -14627653 - MIR3 SINE MIR -6 202 67 2250 94 3 7 chr1 267567072 267567370 -14626294 - AluSc SINE Alu -12 297 1 363 337 77 24 chr1 267567572 267567741 -14625923 - MER5B DNA MER1_type 0 178 1 339 264 100 0 chr1 267568016 267568126 -14625538 - MIR SINE MIR -9 253 133 298 342 43 0 chr1 267568326 267568443 -14625221 + MIR SINE MIR 18 139 -123 325 378 16 0 chr1 267568449 267568576 -14625088 - L2 LINE L2 -1 3312 3184 1162 257 140 12 chr1 267568906 267569314 -14624350 - L2 LINE L2 -475 2839 2380 379 284 20 71 chr1 267570007 267570204 -14623460 + MER5A DNA MER1_type 1 187 -2 21 0 0 0 chr1 267570838 267570859 -14622805 + AT_rich Low_complexity Low_complexity 1 21 0 3224 211 11 18 chr1 267570871 267571614 -14622050 + L1M4 LINE L1 4516 5253 -893 180 171 0 29 chr1 267573317 267573352 -14620312 - L2 LINE L2 -192 3080 3047 1915 169 0 3 chr1 267573909 267574205 -14619459 + AluJb SINE Alu 1 295 -17 840 189 82 45 chr1 267574568 267574811 -14618853 + MIR SINE MIR 11 262 0 2280 108 0 0 chr1 267576975 267577282 -14616382 + AluSq SINE Alu 1 307 -6 2281 102 22 0 chr1 267577854 267578177 -14615487 + L1PA10 LINE L1 5796 6125 -43 593 37 0 12 chr1 267578182 267578263 -14615401 + (CATAA)n Simple_repeat Simple_repeat 5 84 0 23 0 0 0 chr1 267578278 267578301 -14615363 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr1 267578808 267578828 -14614836 + (A)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chr1 267578889 267578910 -14614754 + (TC)n Simple_repeat Simple_repeat 2 22 0 185 286 0 0 chr1 267579085 267579127 -14614537 + MIR SINE MIR 68 109 -99 22 0 0 0 chr1 267579164 267579186 -14614478 + AT_rich Low_complexity Low_complexity 1 22 0 215 314 39 45 chr1 267579412 267579568 -14614096 + L2 LINE L2 2667 2821 -493 1346 160 286 32 chr1 267580260 267580537 -14613127 + Tigger2 DNA MER2_type 1 206 -2512 1461 201 7 14 chr1 267580537 267580831 -14612833 + AluJo SINE Alu 1 292 -20 1346 160 286 32 chr1 267580831 267580956 -14612708 + Tigger2 DNA MER2_type 206 2718 0 2332 75 3 3 chr1 267581233 267581525 -14612139 + AluY SINE Alu 1 292 -19 24 0 0 0 chr1 267582067 267582091 -14611573 + AT_rich Low_complexity Low_complexity 1 24 0 263 338 86 60 chr1 267583592 267583941 -14609723 - L2 LINE L2 -5 3267 2910 21 36 0 0 chr1 267584128 267584156 -14609508 + AT_rich Low_complexity Low_complexity 1 28 0 595 199 30 4 chr1 267585751 267585979 -14607685 + GA-rich Low_complexity Low_complexity 1 233 0 212 343 0 0 chr1 267586049 267586119 -14607545 + L2 LINE L2 3199 3268 -4 183 80 0 0 chr1 267586757 267586782 -14606882 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 824 133 175 0 chr1 267587870 267588036 -14605628 - Charlie3 DNA MER1_type -2515 195 1 729 306 91 33 chr1 267588651 267589366 -14604298 + L2 LINE L2 2291 3079 -193 658 137 0 0 chr1 267589380 267589482 -14604182 + Ricksha DNA DNA 2 103 -1943 4375 160 30 26 chr1 267589510 267590088 -14603576 + Ricksha DNA DNA 2350 2905 -346 2901 0 0 0 chr1 267590088 267590394 -14603270 - AluYa5 SINE Alu -4 307 2 4375 160 30 26 chr1 267590394 267590736 -14602928 + Ricksha DNA DNA 2905 3244 -7 243 277 0 0 chr1 267590803 267590850 -14602814 + L2 LINE L2 3137 3183 -89 4179 166 99 35 chr1 267592747 267593604 -14600060 + MER21A LTR ERV1 17 928 -3 1378 66 11 0 chr1 267594211 267594393 -14599271 - THE1A LTR MaLR 0 355 172 245 281 11 56 chr1 267594514 267594603 -14599061 - L2 LINE L2 0 3313 3229 2356 78 0 0 chr1 267595700 267595996 -14597668 + AluSg SINE Alu 1 296 -14 442 308 35 17 chr1 267596309 267596481 -14597183 + MIR3 SINE MIR 32 206 -2 725 152 0 0 chr1 267597080 267597179 -14596485 + AluJ/FLAM SINE Alu 2 100 -212 1996 162 0 0 chr1 267597578 267597887 -14595777 - AluSx SINE Alu -3 309 1 229 207 17 0 chr1 267598079 267598137 -14595527 - MER69 DNA AcHobo -58 2468 2410 443 271 208 0 chr1 267598304 267598540 -14595124 - LTR33A LTR ERVL -4 519 235 996 278 172 26 chr1 267598643 267599068 -14594596 - MLT1E LTR MaLR -85 508 22 371 233 174 70 chr1 267599105 267599277 -14594387 - LTR33A LTR ERVL -327 196 7 351 0 0 0 chr1 267599480 267599519 -14594145 + (CA)n Simple_repeat Simple_repeat 1 39 0 2110 255 79 13 chr1 267599896 267600452 -14593212 + MLT1G1 LTR MaLR 3 595 0 402 254 76 46 chr1 267600507 267600775 -14592889 - MLT1L LTR MaLR -3 611 231 182 428 23 8 chr1 267601445 267601576 -14592088 + L2 LINE L2 2550 2682 -632 2123 121 0 0 chr1 267601915 267602230 -14591434 + AluSx SINE Alu 1 315 0 2313 117 3 0 chr1 267602779 267603087 -14590577 - AluSp SINE Alu -4 309 1 218 281 0 0 chr1 267603117 267603174 -14590490 + L2 LINE L2 3216 3272 0 185 226 81 65 chr1 267603549 267603611 -14590053 + L3 LINE CR1 583 645 -932 201 324 124 19 chr1 267604823 267604928 -14588736 - MIR SINE MIR -58 150 35 2079 146 0 0 chr1 267605886 267606188 -14587476 - AluJb SINE Alu -10 302 1 216 97 0 0 chr1 267606715 267606746 -14586918 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 181 259 9 121 chr1 267606819 267606935 -14586729 - L2 LINE L2 -73 3199 3097 265 294 157 0 chr1 267607562 267607664 -14586000 + L2 LINE L2 3154 3271 -1 349 265 88 27 chr1 267607678 267607825 -14585839 - L2 LINE L2 -858 2456 2301 301 275 109 36 chr1 267607842 267607980 -14585684 + MIR SINE MIR 100 247 -15 317 219 143 19 chr1 267608488 267608593 -14585071 + MIR SINE MIR 28 145 -117 339 250 0 0 chr1 267609079 267609147 -14584517 + L2 LINE L2 3246 3313 0 1328 169 134 4 chr1 267610303 267610557 -14583107 - AluJo SINE Alu -15 297 11 1758 184 3 52 chr1 267611096 267611153 -14582511 - MER2 DNA MER2_type -14 331 273 756 189 8 0 chr1 267611153 267611285 -14582379 + FLAM_C SINE Alu 1 133 0 1758 184 3 52 chr1 267611285 267611575 -14582089 - MER2 DNA MER2_type -72 273 1 394 33 33 0 chr1 267612547 267612607 -14581057 + (TG)n Simple_repeat Simple_repeat 2 63 0 30 59 0 0 chr1 267614639 267614690 -14578974 + AT_rich Low_complexity Low_complexity 1 51 0 200 257 118 81 chr1 267614805 267614941 -14578723 - MIR3 SINE MIR -67 141 1 317 267 20 0 chr1 267615307 267615408 -14578256 + (TA)n Simple_repeat Simple_repeat 2 104 0 991 187 46 121 chr1 267615702 267616205 -14577459 - MER4C LTR ERV1 0 465 1 2068 179 126 90 chr1 267617205 267617930 -14575734 + LTR1B LTR ERV1 1 751 -75 2352 97 0 3 chr1 267618255 267618553 -14575111 - AluSc SINE Alu -12 297 1 273 281 180 23 chr1 267618662 267618790 -14574874 + L2 LINE L2 3125 3272 0 216 233 90 98 chr1 267620835 267620968 -14572696 + L2 LINE L2 3117 3248 -24 2231 80 0 4 chr1 267621678 267621953 -14571711 - AluY SINE Alu -16 295 22 873 136 0 0 chr1 267622083 267622215 -14571449 + AluSg SINE Alu 1 132 -178 2065 104 30 0 chr1 267622217 267622486 -14571178 + AluSg SINE Alu 1 277 -33 226 0 0 56 chr1 267622487 267622523 -14571141 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 448 248 22 22 chr1 267622676 267622999 -14570665 - MLT1I LTR MaLR 0 409 43 491 169 0 12 chr1 267623564 267623647 -14570017 + U6 snRNA snRNA 22 103 -4 821 122 0 20 chr1 267623647 267623795 -14569869 + L1MB3 LINE L1 6038 6182 -1 364 108 72 0 chr1 267623795 267623878 -14569786 + Charlie5 DNA MER1_type 2434 2522 -90 333 269 71 80 chr1 267624000 267624154 -14569510 - MIR SINE MIR 0 262 109 2474 96 0 0 chr1 267624154 267624466 -14569198 + AluSx SINE Alu 1 312 0 333 269 71 80 chr1 267624466 267624549 -14569115 - MIR SINE MIR -153 109 27 703 220 138 27 chr1 267625132 267625428 -14568236 + L2 LINE L2 2942 3270 -43 2255 98 7 0 chr1 267625508 267625803 -14567861 + AluSp SINE Alu 1 297 -16 1133 289 44 75 chr1 267625803 267626905 -14566759 + L2 LINE L2 2245 3312 -1 266 294 26 10 chr1 267626935 267627032 -14566632 - MIR SINE MIR -63 145 50 2247 123 3 0 chr1 267627122 267627424 -14566240 + AluSp SINE Alu 2 304 -9 262 319 64 57 chr1 267629621 267629778 -14563886 - Charlie8 DNA MER1_type -2162 255 98 477 211 79 26 chr1 267631998 267632112 -14561552 + FLAM_C SINE Alu 2 121 -12 234 0 0 0 chr1 267632271 267632297 -14561367 + (A)n Simple_repeat Simple_repeat 1 26 0 2022 146 3 3 chr1 267632321 267632629 -14561035 + AluSx SINE Alu 1 308 -4 237 284 83 9 chr1 267633435 267633544 -14560120 - MLT1J2 LTR MaLR -67 383 267 284 354 9 0 chr1 267634147 267634260 -14559404 - L2 LINE L2 0 3272 3159 263 234 78 39 chr1 267634792 267634920 -14558744 + MER117 DNA MER1_type 29 161 -36 2345 108 8 25 chr1 267636871 267637232 -14556432 - THE1A LTR MaLR 0 355 1 11376 98 11 8 chr1 267637232 267638807 -14554857 - THE1A-int LTR MaLR 0 1580 1 2290 104 32 9 chr1 267638807 267639154 -14554510 - THE1A LTR MaLR 0 355 1 292 207 133 37 chr1 267639833 267639968 -14553696 - MER5C DNA MER1_type -48 276 129 2343 110 0 3 chr1 267640232 267640542 -14553122 - AluSg SINE Alu -1 309 1 228 232 121 30 chr1 267640664 267640763 -14552901 - Charlie3 DNA MER1_type -327 2383 2276 22 0 0 0 chr1 267641477 267641499 -14552165 + AT_rich Low_complexity Low_complexity 1 22 0 347 167 0 0 chr1 267641799 267641859 -14551805 + MER116 DNA Mariner 20 79 -1 369 284 76 58 chr1 267642032 267642427 -14551237 - L1 LINE L1 -1622 4524 4123 399 310 64 5 chr1 267643702 267643889 -14549775 + MIR SINE MIR 20 217 -45 256 274 14 14 chr1 267644189 267644262 -14549402 - L2 LINE L2 0 3313 3241 192 250 0 0 chr1 267645181 267645225 -14548439 + L2 LINE L2 1368 1411 -1903 239 263 10 20 chr1 267646196 267646295 -14547369 + L2 LINE L2 2008 2105 -1209 592 251 42 18 chr1 267646369 267646536 -14547128 + MER45A DNA AcHobo 6 176 -2 2232 79 41 3 chr1 267647026 267647342 -14546322 + L1MA3 LINE L1 5978 6305 0 1680 112 17 0 chr1 267647742 267647975 -14545689 + AluSq SINE Alu 60 296 -17 2378 91 0 0 chr1 267648274 267648571 -14545093 + AluSg SINE Alu 1 297 -13 812 186 90 0 chr1 267649572 267649717 -14543947 - FRAM SINE Alu -14 162 5 244 364 141 11 chr1 267649761 267649945 -14543719 + L2 LINE L2 2896 3103 -169 385 196 10 20 chr1 267650067 267650169 -14543495 + GA-rich Low_complexity Low_complexity 4 104 0 1374 212 186 36 chr1 267651290 267651813 -14541851 - LTR36 LTR ERV1 -10 601 1 418 313 73 32 chr1 267651852 267652101 -14541563 + L3 LINE CR1 250 603 -974 2005 126 10 0 chr1 267652800 267653109 -14540555 - L1MA9 LINE L1 -688 5624 5313 * 3250 160 31 50 chr1 267653106 267653789 -14539875 + L1MA9 LINE L1 5621 6290 -22 219 261 11 68 chr1 267654113 267654201 -14539463 + MIR SINE MIR 88 170 -92 2063 110 7 20 chr1 267654573 267654874 -14538790 - AluSc SINE Alu -12 297 1 239 200 74 53 chr1 267655039 267655134 -14538530 + MARNA DNA Mariner 33 129 -457 1076 136 157 21 chr1 267655154 267655389 -14538275 - L1MA6 LINE L1 0 6300 6034 203 352 42 49 chr1 267656077 267656219 -14537445 - L2 LINE L2 -5 3267 3127 2508 61 0 0 chr1 267657423 267657717 -14535947 + AluY SINE Alu 1 294 -17 348 300 33 33 chr1 267657739 267657919 -14535745 - MARNA DNA Mariner -41 545 366 2180 111 3 25 chr1 267658179 267658494 -14535170 + AluJb SINE Alu 1 308 -4 1359 147 290 35 chr1 267658617 267658890 -14534774 + Tigger2 DNA MER2_type 1 203 -2515 1482 201 7 14 chr1 267658890 267659184 -14534480 + AluJo SINE Alu 1 292 -20 1359 147 290 35 chr1 267659184 267659309 -14534355 + Tigger2 DNA MER2_type 203 2718 0 2362 71 3 3 chr1 267659585 267659879 -14533785 + AluY SINE Alu 1 294 -17 24 0 0 0 chr1 267660421 267660445 -14533219 + AT_rich Low_complexity Low_complexity 1 24 0 263 338 86 60 chr1 267661946 267662295 -14531369 - L2 LINE L2 -5 3267 2910 21 36 0 0 chr1 267662482 267662510 -14531154 + AT_rich Low_complexity Low_complexity 1 28 0 340 328 118 25 chr1 267666307 267666511 -14527153 + MIR SINE MIR 20 242 -20 2377 81 0 16 chr1 267667138 267667446 -14526218 - AluSq SINE Alu -10 303 1 1508 175 130 7 chr1 267667707 267667976 -14525688 - AluJo SINE Alu 0 302 1 2845 168 73 49 chr1 267668114 267668849 -14524815 - LTR1B LTR ERV1 0 785 1 282 317 110 35 chr1 267672994 267673139 -14520525 + L2 LINE L2 3116 3271 -1 333 216 84 58 chr1 267674835 267675025 -14518639 + L1ME4a LINE L1 5860 6054 -67 185 146 73 0 chr1 267676285 267676326 -14517338 - L2 LINE L2 -5 3308 3265 224 276 43 78 chr1 267678881 267678997 -14514667 - MER5B DNA MER1_type -5 173 62 1576 108 0 0 chr1 267679024 267679236 -14514428 - AluSg/x SINE Alu -15 295 84 497 146 0 0 chr1 267679247 267679263 -14514401 - AluSp/q SINE Alu -16 297 282 369 0 0 0 chr1 267679263 267679304 -14514360 + (TG)n Simple_repeat Simple_repeat 1 41 0 497 146 0 0 chr1 267679304 267679369 -14514295 - AluSp/q SINE Alu -30 283 216 360 0 0 0 chr1 267679456 267679496 -14514168 + (TG)n Simple_repeat Simple_repeat 2 41 0 529 125 0 0 chr1 267679528 267679542 -14514122 - AluSp/q SINE Alu -18 295 282 420 20 0 0 chr1 267679542 267679591 -14514073 + (TG)n Simple_repeat Simple_repeat 1 49 0 529 125 0 0 chr1 267679591 267679656 -14514008 - AluSp/q SINE Alu -30 283 216 21 36 0 0 chr1 267680064 267680092 -14513572 + AT_rich Low_complexity Low_complexity 1 28 0 1926 106 4 0 chr1 267680121 267680375 -14513289 + L1PA8 LINE L1 5908 6162 -10 237 284 23 68 chr1 267680496 267680584 -14513080 - MIR SINE MIR -90 118 35 403 320 90 30 chr1 267680687 267680921 -14512743 + MIR SINE MIR 15 262 0 186 239 97 89 chr1 267681328 267681441 -14512223 - MER5A DNA MER1_type -5 184 62 183 42 0 0 chr1 267681476 267681500 -14512164 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 364 289 119 9 chr1 267682404 267682581 -14511083 + MIR SINE MIR 44 249 -13 4201 188 47 29 chr1 267682949 267683780 -14509884 + MER21B LTR ERV1 1 846 -17 192 211 0 58 chr1 267684094 267684146 -14509518 - L2 LINE L2 -1 3312 3264 271 291 82 67 chr1 267684243 267684377 -14509287 + L2 LINE L2 3132 3267 -5 2193 127 0 0 chr1 267684837 267685145 -14508519 + AluSx SINE Alu 1 308 -4 23 33 0 0 chr1 267686043 267686073 -14507591 + AT_rich Low_complexity Low_complexity 1 30 0 370 273 78 65 chr1 267686110 267686432 -14507232 + L1M4 LINE L1 4943 5268 -878 2834 151 24 0 chr1 267686869 267687285 -14506379 + MSTB LTR MaLR 1 426 0 834 119 0 0 chr1 267687966 267688100 -14505564 + (TA)n Simple_repeat Simple_repeat 2 135 0 2189 87 21 7 chr1 267688100 267688388 -14505276 - AluSp SINE Alu -21 292 1 469 310 120 15 chr1 267688447 267688721 -14504943 + L1MC4 LINE L1 7574 7876 -166 2149 198 40 8 chr1 267689578 267690064 -14503600 + Charlie1b DNA MER1_type 1 518 -5 330 340 82 19 chr1 267690145 267690351 -14503313 - MIR SINE MIR -27 235 17 264 256 178 0 chr1 267690591 267690681 -14502983 - MER94 DNA DNA -25 109 4 2531 167 47 14 chr1 267690929 267691437 -14502227 + L1MB3 LINE L1 5593 6117 -66 13036 137 105 2 chr1 267691491 267693657 -14500007 + Tigger1 DNA MER2_type 31 2418 0 350 266 0 0 chr1 267694893 267694972 -14498692 + MER116 DNA Mariner 2 80 0 2923 139 72 28 chr1 267695012 267695200 -14498464 - LTR49 LTR ERV1 0 595 417 4242 140 21 2 chr1 267695200 267695823 -14497841 - MER41B LTR ERV1 0 635 1 2923 139 72 28 chr1 267695823 267696204 -14497460 - LTR49 LTR ERV1 -178 417 1 213 330 42 0 chr1 267696280 267696398 -14497266 + L2 LINE L2 2308 2430 -884 736 299 73 38 chr1 267696521 267696916 -14496748 + MLT1K LTR MaLR 164 572 -16 3625 148 89 27 chr1 267697483 267698178 -14495486 - L1PA16 LINE L1 -3 6163 5426 3833 120 67 32 chr1 267699131 267699536 -14494128 + MER39B LTR ERV1 1 437 -216 1698 119 12 0 chr1 267699536 267699779 -14493885 - AluSc SINE Alu -20 289 44 3833 120 67 32 chr1 267699779 267700004 -14493660 + MER39B LTR ERV1 437 653 0 185 345 36 0 chr1 267703081 267703165 -14490499 + MIR SINE MIR 102 188 -74 1865 183 72 17 chr1 267703578 267704053 -14489611 + Charlie1 DNA MER1_type 2260 2760 -1 24 32 0 0 chr1 267707718 267707749 -14485915 + AT_rich Low_complexity Low_complexity 1 31 0 235 254 32 0 chr1 267709931 267709994 -14483670 + CT-rich Low_complexity Low_complexity 2 66 0 232 310 23 0 chr1 267710119 267710206 -14483458 + MIR SINE MIR 118 206 -56 1607 181 14 0 chr1 267710319 267710606 -14483058 - AluJo SINE Alu -17 295 5 400 246 51 34 chr1 267711499 267711617 -14482047 - L2 LINE L2 -2 3311 3192 2216 85 0 11 chr1 267711909 267712216 -14481448 + AluY SINE Alu 4 307 0 184 228 13 25 chr1 267712653 267712732 -14480932 + (CATA)n Simple_repeat Simple_repeat 2 79 0 624 317 162 24 chr1 267713692 267714234 -14479430 + L3 LINE CR1 440 1056 -521 260 307 201 22 chr1 267714284 267714463 -14479201 + L3 LINE CR1 1290 1500 -77 180 0 0 0 chr1 267717105 267717125 -14476539 + (T)n Simple_repeat Simple_repeat 1 20 0 1862 159 75 17 chr1 267717233 267717578 -14476086 + MLT1A1 LTR MaLR 1 365 0 1537 189 3 29 chr1 267717662 267717969 -14475695 - AluJo SINE Alu -13 299 1 220 279 89 0 chr1 267718278 267718357 -14475307 + L2 LINE L2 2564 2649 -665 2539 47 0 41 chr1 267718373 267718693 -14474971 - AluY SINE Alu -4 307 1 503 229 59 53 chr1 267721065 267721235 -14472429 - MER5B DNA MER1_type -7 171 1 25 0 0 0 chr1 267722331 267722356 -14471308 + AT_rich Low_complexity Low_complexity 1 25 0 228 67 0 0 chr1 267724666 267724696 -14468968 + (CTG)n Simple_repeat Simple_repeat 1 30 0 321 245 127 95 chr1 267726453 267726800 -14466864 + L1M2 LINE L1 773 1130 -5719 21 36 0 0 chr1 267727290 267727318 -14466346 + GC_rich Low_complexity Low_complexity 1 28 0 287 262 49 98 chr1 267728202 267728229 -14465435 - L2 LINE L2 0 3272 3245 2302 70 0 51 chr1 267728229 267728545 -14465119 + AluY SINE Alu 1 300 -11 287 262 49 98 chr1 267728545 267728639 -14465025 - L2 LINE L2 -27 3245 3157 1761 231 223 33 chr1 267731304 267731572 -14462092 + Charlie1a DNA MER1_type 3 219 -2542 2400 127 33 28 chr1 267731572 267731934 -14461730 + THE1B LTR MaLR 1 364 0 1761 231 223 33 chr1 267731934 267732523 -14461141 + Charlie1a DNA MER1_type 219 1023 -432 376 261 21 92 chr1 267732699 267732937 -14460727 + L1MC4 LINE L1 7821 8041 -1 2384 88 0 0 chr1 267733199 267733496 -14460168 + AluSg SINE Alu 1 297 -13 242 375 20 65 chr1 267734124 267734324 -14459340 - L3 LINE CR1 -5 1572 1382 187 261 14 14 chr1 267734346 267734415 -14459249 + MIR3 SINE MIR 132 200 -8 217 298 35 44 chr1 267734528 267734642 -14459022 - MIR3 SINE MIR -9 199 87 2145 107 7 0 chr1 267734719 267735008 -14458656 - AluSx SINE Alu -20 292 2 460 257 106 5 chr1 267735280 267735498 -14458166 + L1ME4a LINE L1 5643 5882 -239 401 203 98 8 chr1 267735541 267735674 -14457990 + L1ME4a LINE L1 5975 6119 -2 207 61 61 41 chr1 267736126 267736175 -14457489 + (TATAA)n Simple_repeat Simple_repeat 2 51 0 2303 98 3 19 chr1 267737051 267737368 -14456296 - AluSx SINE Alu 0 312 1 1820 152 0 14 chr1 267737464 267737747 -14455917 + AluJb SINE Alu 1 279 -33 2805 111 39 10 chr1 267737748 267738162 -14455502 - MSTA LTR MaLR -2 426 1 430 234 143 7 chr1 267738215 267738369 -14455295 + MIR SINE MIR 88 262 0 36 23 0 0 chr1 267740376 267740419 -14453245 + AT_rich Low_complexity Low_complexity 1 43 0 513 258 15 23 chr1 267740722 267740854 -14452810 - MIR SINE MIR -62 146 16 24 32 0 0 chr1 267741223 267741254 -14452410 + AT_rich Low_complexity Low_complexity 1 31 0 2273 122 0 0 chr1 267741360 267741672 -14451992 + AluSx SINE Alu 1 312 0 201 39 0 0 chr1 267742315 267742341 -14451323 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2210 82 11 0 chr1 267742344 267742623 -14451041 - AluSp SINE Alu -31 282 1 255 265 10 88 chr1 267742662 267742764 -14450900 + MIR SINE MIR 36 129 -133 2286 117 0 0 chr1 267743621 267743928 -14449736 - AluSq SINE Alu -6 307 1 214 209 31 23 chr1 267745064 267745143 -14448521 + CT-rich Low_complexity Low_complexity 1 130 0 219 360 56 16 chr1 267745380 267745505 -14448159 + L2 LINE L2 3139 3268 -4 302 241 41 77 chr1 267745900 267746070 -14447594 - HAL1 LINE L1 0 2507 2344 1399 176 141 22 chr1 267746095 267746414 -14447250 - MLT1A1 LTR MaLR -8 357 1 3385 251 62 42 chr1 267746426 267746806 -14446858 - HAL1 LINE L1 -194 2313 1942 207 0 0 0 chr1 267746806 267746829 -14446835 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3385 251 62 42 chr1 267746829 267747795 -14445869 - HAL1 LINE L1 -565 1942 940 528 160 60 20 chr1 267747797 267747897 -14445767 - FLAM_A SINE Alu -7 135 32 512 304 0 7 chr1 267747926 267748064 -14445600 - HAL1 LINE L1 -1620 887 751 657 243 29 14 chr1 267748115 267748325 -14445339 - L1MEc LINE L1 -4186 2210 1998 874 251 0 0 chr1 267748386 267748553 -14445111 - FAM SINE Alu -8 167 1 198 135 19 77 chr1 267748747 267748851 -14444813 + (TTTAG)n Simple_repeat Simple_repeat 3 100 0 224 160 0 20 chr1 267749006 267749056 -14444608 + (TTA)n Simple_repeat Simple_repeat 3 51 0 295 267 0 12 chr1 267749068 267749154 -14444510 - L1M4 LINE L1 -3379 2767 2683 453 312 54 57 chr1 267749239 267749537 -14444127 - L2 LINE L2 -1 3312 3016 1013 196 27 27 chr1 267749751 267749975 -14443689 + MIR SINE MIR 32 255 -7 2880 3 0 0 chr1 267749979 267750284 -14443380 + AluYa5 SINE Alu 1 305 -6 484 330 138 11 chr1 267750756 267751038 -14442626 + L2 LINE L2 2199 2516 -798 522 232 0 0 chr1 267751150 267751314 -14442350 + G-rich Low_complexity Low_complexity 1 164 0 710 343 132 33 chr1 267751481 267751998 -14441666 + L2 LINE L2 2199 2811 -461 4759 48 52 0 chr1 267751998 267752560 -14441104 - LTR10C LTR ERV1 0 591 1 710 343 132 33 chr1 267752560 267752784 -14440880 + L2 LINE L2 2811 3011 -261 313 348 135 26 chr1 267753242 267753509 -14440155 + L2 LINE L2 2969 3264 -8 4144 76 11 12 chr1 267753639 267754221 -14439443 - LTR10C LTR ERV1 -1 546 1 4790 146 66 21 chr1 267754442 267754481 -14439183 - L1MB3 LINE L1 -9 6174 6138 2153 95 20 10 chr1 267754481 267754776 -14438888 - AluSg SINE Alu -12 298 1 4790 146 66 21 chr1 267754776 267755705 -14437959 - L1MB3 LINE L1 -45 6138 5174 1753 184 0 16 chr1 267755998 267756307 -14437357 + AluJo SINE Alu 1 304 -8 2315 82 3 3 chr1 267756921 267757215 -14436449 - AluSq SINE Alu -19 294 1 249 333 42 17 chr1 267758039 267758159 -14435505 - L3 LINE CR1 -840 737 615 973 328 41 9 chr1 267758312 267758748 -14434916 + LTR16B LTR ERVL 3 452 -12 2290 93 13 13 chr1 267759218 267759528 -14434136 + AluSx SINE Alu 3 312 0 1702 77 8 30 chr1 267759534 267759769 -14433895 + AluY SINE Alu 1 230 -81 874 321 49 10 chr1 267760458 267760866 -14432798 + LTR16B LTR ERVL 29 452 -12 2307 93 13 13 chr1 267761336 267761646 -14432018 + AluSx SINE Alu 3 312 0 1354 99 67 28 chr1 267761652 267761934 -14431730 + AluY SINE Alu 1 293 -18 2087 104 25 0 chr1 267763409 267763689 -14429975 + AluSx SINE Alu 3 289 -23 1602 109 139 34 chr1 267764160 267764426 -14429238 - AluSg SINE Alu -16 294 1 1765 149 47 0 chr1 267766053 267766328 -14427336 - AluSx SINE Alu -24 288 1 770 298 70 88 chr1 267766351 267766601 -14427063 + L2 LINE L2 2270 2523 -791 2180 128 3 0 chr1 267766601 267766907 -14426757 + AluSc SINE Alu 1 307 -2 770 298 70 88 chr1 267766907 267767324 -14426340 + L2 LINE L2 2523 2925 -389 1323 221 91 65 chr1 267767911 267768145 -14425519 - L1MC5 LINE L1 -50 7911 7684 2190 106 14 0 chr1 267768145 267768429 -14425235 - AluSx SINE Alu -24 288 1 1323 221 91 65 chr1 267768429 267768615 -14425049 - L1MC5 LINE L1 -277 7684 7504 1863 157 7 16 chr1 267768615 267768921 -14424743 - AluJb SINE Alu -9 303 1 1323 221 91 65 chr1 267768921 267769216 -14424448 - L1MC5 LINE L1 -457 7504 7246 1436 234 74 72 chr1 267769244 267769873 -14423791 - L1MC4 LINE L1 -733 7228 6629 2171 110 0 7 chr1 267770116 267770406 -14423258 + AluSc SINE Alu 8 295 -14 2603 35 0 26 chr1 267772011 267772321 -14421343 - AluY SINE Alu -9 302 1 35 41 0 0 chr1 267772937 267772986 -14420678 + AT_rich Low_complexity Low_complexity 1 49 0 2289 95 0 3 chr1 267773029 267773324 -14420340 + AluY SINE Alu 1 294 -17 644 254 149 44 chr1 267773985 267774280 -14419384 + LTR33A LTR ERVL 1 326 -197 1384 241 36 26 chr1 267774318 267774704 -14418960 - MLT1C LTR MaLR -2 465 76 233 350 8 0 chr1 267774859 267774976 -14418688 + LTR33A LTR ERVL 406 523 0 1642 174 0 40 chr1 267775828 267776126 -14417538 - AluJo SINE Alu -26 286 1 198 0 0 0 chr1 267776204 267776226 -14417438 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 392 326 120 51 chr1 267776228 267776482 -14417182 - L2 LINE L2 -16 3297 3062 2125 114 54 38 chr1 267776482 267776851 -14416813 + THE1C LTR MaLR 1 375 0 392 326 120 51 chr1 267776851 267777358 -14416306 - L2 LINE L2 -251 3062 2488 1843 239 112 20 chr1 267777359 267777895 -14415769 + MLT1E LTR MaLR 1 585 -8 337 289 127 30 chr1 267778489 267778686 -14414978 + MIR SINE MIR 22 237 -25 220 214 48 0 chr1 267778654 267778696 -14414968 + L2 LINE L2 3210 3253 -19 * 315 337 62 44 chr1 267778801 267779031 -14414633 + L2 LINE L2 1630 1871 -1443 2215 93 7 7 chr1 267779031 267779320 -14414344 - AluSc SINE Alu -20 289 1 315 337 62 44 chr1 267779320 267779475 -14414189 + L2 LINE L2 1871 2022 -1292 2187 126 57 17 chr1 267779835 267780185 -14413479 + THE1B LTR MaLR 1 364 0 349 340 54 17 chr1 267780189 267780486 -14413178 + L2 LINE L2 2589 2896 -418 2242 91 7 0 chr1 267780542 267780838 -14412826 - AluSg SINE Alu -12 298 1 255 219 184 26 chr1 267781031 267781145 -14412519 + L2 LINE L2 3137 3268 -4 394 346 141 39 chr1 267781157 267781547 -14412117 + L2 LINE L2 2884 3313 0 2225 104 10 3 chr1 267781666 267781973 -14411691 + AluSg SINE Alu 1 309 -1 338 315 88 55 chr1 267782200 267782473 -14411191 + HERV16 LTR ERVL 3837 4118 -878 4807 42 14 9 chr1 267782555 267783133 -14410531 - LTR10C LTR ERV1 0 591 11 1053 330 64 37 chr1 267783143 267783904 -14409760 + HERV16 LTR ERVL 4545 5326 -438 931 302 81 11 chr1 267784136 267784507 -14409157 + LTR16C LTR ERVL 89 485 -6 754 228 72 0 chr1 267784508 267784688 -14408976 - MLT1D LTR MaLR -2 503 311 804 209 55 62 chr1 267784904 267785148 -14408516 - MLT1D LTR MaLR -141 249 20 206 362 50 7 chr1 267785374 267785515 -14408149 - MIR SINE MIR -109 153 7 1608 129 13 0 chr1 267785515 267785739 -14407925 - AluSx SINE Alu -85 227 1 3397 117 12 58 chr1 267785837 267786410 -14407254 + LTR10B LTR ERV1 1 547 0 6773 118 29 51 chr1 267786621 267787806 -14405858 + Tigger3b DNA MER2_type 14 1172 -59 242 149 40 14 chr1 267787870 267787944 -14405720 + (TA)n Simple_repeat Simple_repeat 1 76 0 275 294 116 29 chr1 267789054 267789329 -14404335 + HAL1 LINE L1 812 1110 -1397 587 226 4 143 chr1 267789396 267789626 -14404038 - MER58A DNA MER1_type -15 209 12 256 251 91 119 chr1 267789650 267789938 -14403726 + HAL1 LINE L1 1113 1386 -1121 1426 181 109 0 chr1 267789938 267790204 -14403460 - AluJo SINE Alu -15 297 3 256 251 91 119 chr1 267790204 267790353 -14403311 + HAL1 LINE L1 1386 1538 -969 2273 109 3 0 chr1 267790356 267790659 -14403005 + AluSc SINE Alu 1 304 -5 811 206 13 0 chr1 267790660 267790815 -14402849 + AluJo/FRAM SINE Alu 136 292 -20 254 266 9 37 chr1 267790827 267790936 -14402728 + HAL1 LINE L1 1557 1662 -845 798 246 147 37 chr1 267791312 267791728 -14401936 + MLT1C LTR MaLR 1 467 0 2347 148 31 58 chr1 267799326 267799579 -14394085 + Tigger2a DNA MER2_type 1 238 -2470 2319 96 3 0 chr1 267799579 267799881 -14393783 + AluY SINE Alu 1 303 -8 2347 148 31 58 chr1 267799881 267800073 -14393591 + Tigger2a DNA MER2_type 238 434 0 2226 164 23 57 chr1 267800546 267801023 -14392641 + LOR1b LTR ERV1 1 461 0 934 135 0 0 chr1 267802987 267803120 -14390544 + FLAM_C SINE Alu 1 133 0 2056 103 0 34 chr1 267805061 267805378 -14388286 + AluSx SINE Alu 1 307 0 183 42 0 0 chr1 267806707 267806731 -14386933 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 522 269 41 66 chr1 267807922 267808119 -14385545 - MIR3 SINE MIR -4 204 13 624 293 5 16 chr1 267808489 267808680 -14384984 - MIR SINE MIR -57 205 17 1695 83 0 9 chr1 267809115 267809333 -14384331 + AluSq SINE Alu 83 298 -15 4386 137 79 13 chr1 267810318 267811093 -14382571 + LTR1B LTR ERV1 1 826 0 568 236 0 8 chr1 267811118 267811241 -14382423 + L2 LINE L2 3187 3308 -5 27 49 0 0 chr1 267811274 267811315 -14382349 + AT_rich Low_complexity Low_complexity 1 41 0 249 197 0 0 chr1 267811442 267811503 -14382161 + (TG)n Simple_repeat Simple_repeat 2 62 0 2604 140 30 23 chr1 267811506 267811935 -14381729 + Tigger2a DNA MER2_type 1 432 -2 192 77 0 0 chr1 267811958 267811984 -14381680 + (GA)n Simple_repeat Simple_repeat 2 27 0 2365 101 3 0 chr1 267812080 267812386 -14381278 - AluY SINE Alu -4 307 1 378 42 0 0 chr1 267812648 267812696 -14380968 + (CA)n Simple_repeat Simple_repeat 2 49 0 613 276 65 17 chr1 267812899 267813131 -14380533 + MIR SINE MIR 20 262 0 232 261 29 0 chr1 267813213 267813282 -14380382 - L1ME LINE L1 -504 5617 5547 1632 195 3 13 chr1 267813410 267813717 -14379947 - AluJo SINE Alu 0 312 9 228 258 45 0 chr1 267813869 267813935 -14379729 + MLT1J2 LTR MaLR 69 137 -313 1981 98 25 51 chr1 267814369 267814684 -14378980 + AluSx SINE Alu 1 307 -5 316 297 70 73 chr1 267814718 267815004 -14378660 - L1ME LINE L1 -1112 5034 4750 2211 53 53 30 chr1 267815378 267815681 -14377983 + AluY SINE Alu 1 310 -1 21 0 0 0 chr1 267815681 267815702 -14377962 + AT_rich Low_complexity Low_complexity 1 21 0 2315 96 7 0 chr1 267815836 267816138 -14377526 + AluSx SINE Alu 1 304 -8 240 215 21 32 chr1 267816440 267816586 -14377078 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 1929 114 8 0 chr1 267816969 267817233 -14376431 + AluSx SINE Alu 42 307 -5 346 282 26 0 chr1 267817235 267817352 -14376312 + L1M4 LINE L1 4046 4165 -1981 357 177 0 0 chr1 267817446 267817508 -14376156 - MLT1A1 LTR MaLR 0 365 304 733 195 0 0 chr1 267817508 267817631 -14376033 + FLAM_C SINE Alu 1 123 -20 2293 99 0 3 chr1 267817640 267817954 -14375710 + AluSq SINE Alu 1 313 0 1284 154 67 57 chr1 267817988 267818286 -14375378 - MLT1A1 LTR MaLR -64 301 1 425 162 0 19 chr1 267819246 267819351 -14374313 - MER96B DNA MER1_type? -240 177 75 319 216 39 10 chr1 267819946 267820048 -14373616 - L1ME4a LINE L1 -33 6088 5984 318 296 42 85 chr1 267820100 267820360 -14373304 + HAL1 LINE L1 2253 2501 -6 308 286 91 36 chr1 267820683 267820903 -14372761 - L1ME4a LINE L1 -175 5946 5715 374 333 84 36 chr1 267820904 267820991 -14372673 + MIR SINE MIR 27 108 -154 2425 94 0 0 chr1 267820991 267821298 -14372366 - AluSq SINE Alu -6 307 1 374 333 84 36 chr1 267821298 267821435 -14372229 + MIR SINE MIR 108 262 0 2131 115 3 10 chr1 267821678 267821983 -14371681 - AluSg SINE Alu -7 303 1 24 0 0 0 chr1 267821986 267822010 -14371654 + AT_rich Low_complexity Low_complexity 1 24 0 2563 71 0 0 chr1 267822010 267822320 -14371344 - AluY SINE Alu -1 310 1 197 367 92 10 chr1 267822449 267822547 -14371117 - MIR3 SINE MIR -99 109 4 7351 43 0 0 chr1 267823744 267824736 -14368928 - L1PA5 LINE L1 -8 6146 5155 2261 68 0 55 chr1 267824737 267825047 -14368617 - AluSp SINE Alu -18 295 3 230 254 104 0 chr1 267826096 267826163 -14367501 - L3 LINE CR1 -351 1226 1153 531 273 78 10 chr1 267826679 267826884 -14366780 + LTR16A LTR ERVL 232 450 0 344 260 297 10 chr1 267827104 267827296 -14366368 - MIR SINE MIR -1 261 15 1961 171 32 3 chr1 267827330 267827676 -14365988 - MSTC LTR MaLR -72 356 1 1105 212 0 0 chr1 267827694 267827883 -14365781 - MER5A DNA MER1_type 0 189 1 1567 154 143 0 chr1 267828283 267828556 -14365108 - AluJo SINE Alu 0 312 1 36 53 0 0 chr1 267828641 267828698 -14364966 + AT_rich Low_complexity Low_complexity 1 57 0 180 273 36 18 chr1 267828773 267828828 -14364836 - L2 LINE L2 0 3313 3258 2119 97 7 14 chr1 267830243 267830560 -14363104 + AluSq SINE Alu 1 315 0 2194 99 26 10 chr1 267830633 267830937 -14362727 + AluSx SINE Alu 1 309 -3 247 215 81 2 chr1 267831702 267831793 -14361871 - MLT1C LTR MaLR -290 100 5 614 218 0 7 chr1 267831796 267831938 -14361726 - L1M3 LINE L1 -593 5587 5447 2128 126 3 0 chr1 267833329 267833631 -14360033 + AluSx SINE Alu 1 303 -9 236 277 108 14 chr1 267834230 267834378 -14359286 - L1MC4 LINE L1 -58 7984 7823 4160 166 21 72 chr1 267834400 267835351 -14358313 + MER4D LTR ERV1 1 903 0 2277 121 0 0 chr1 267835539 267835852 -14357812 + AluSq SINE Alu 1 313 0 354 312 99 31 chr1 267836116 267836319 -14357345 + MIR SINE MIR 34 248 -14 1959 185 125 4 chr1 267836500 267836955 -14356709 - LTR54 LTR ERV1 0 510 1 484 310 7 14 chr1 267837571 267837716 -14355948 + MER5A DNA MER1_type 3 146 -43 223 365 19 28 chr1 267837766 267837873 -14355791 - MIR SINE MIR -154 108 3 2376 104 0 3 chr1 267837880 267838189 -14355475 - AluSg SINE Alu -2 308 1 1218 114 35 0 chr1 267839364 267839577 -14354087 - L1PA16 LINE L1 -70 6096 5870 308 267 131 45 chr1 267840476 267840652 -14353012 + L2 LINE L2 2228 2418 -896 799 266 93 21 chr1 267840872 267841109 -14352555 - MIR SINE MIR -6 256 3 2308 87 0 13 chr1 267841582 267841881 -14351783 - AluSc SINE Alu -14 295 1 210 285 266 30 chr1 267842068 267842331 -14351333 + L2 LINE L2 2325 2649 -665 196 288 12 38 chr1 267842425 267842505 -14351159 + L2 LINE L2 2765 2842 -472 1466 201 48 54 chr1 267842658 267843126 -14350538 - MER31B LTR ERV1 0 661 1 219 146 0 0 chr1 267843773 267843814 -14349850 + (GGA)n Simple_repeat Simple_repeat 1 41 0 294 355 65 16 chr1 267846975 267847099 -14346565 + L2 LINE L2 3134 3263 -9 21 0 0 0 chr1 267849138 267849159 -14344505 + AT_rich Low_complexity Low_complexity 1 21 0 316 71 0 18 chr1 267851716 267851772 -14341892 + Alu SINE Alu 254 308 0 207 186 271 0 chr1 267852151 267852210 -14341454 - MIR SINE MIR -71 191 117 1253 196 0 0 chr1 267852358 267852598 -14341066 - L1MB1 LINE L1 -1 6167 5928 525 183 113 0 chr1 267852598 267852713 -14340951 + MLT1E1 LTR MaLR 527 654 0 618 181 19 56 chr1 267852724 267852884 -14340780 + MER45 DNA AcHobo 1428 1581 0 2125 94 0 0 chr1 267853299 267853566 -14340098 - AluY SINE Alu -8 303 37 1322 202 116 19 chr1 267854354 267854715 -14338949 - MSTD LTR MaLR 0 396 1 1377 163 48 117 chr1 267854969 267855361 -14338303 - MLT1A1 LTR MaLR 0 365 1 416 304 95 12 chr1 267856320 267856563 -14337101 - L1MB1 LINE L1 -407 5763 5501 1997 146 43 106 chr1 267856691 267857247 -14336417 - Charlie1b DNA MER1_type 0 523 3 2372 100 0 3 chr1 267857554 267857865 -14335799 - AluSg SINE Alu 0 310 1 1292 293 75 98 chr1 267857931 267858362 -14335302 + L2 LINE L2 1915 2354 -959 1694 256 25 40 chr1 267858362 267858890 -14334774 + LTR33 LTR ERVL 2 521 0 1292 293 75 98 chr1 267858890 267859880 -14333784 + L2 LINE L2 2354 3313 0 204 40 0 0 chr1 267859972 267859997 -14333667 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1988 142 10 3 chr1 267861486 267861782 -14331882 - AluSx SINE Alu -14 298 1 5589 19 0 0 chr1 267861813 267863117 -14330547 + L1PA2 LINE L1 4828 6202 0 412 113 0 0 chr1 267863117 267863188 -14330476 + (TAAAA)n Simple_repeat Simple_repeat 1 95 0 859 184 53 0 chr1 267863380 267863532 -14330132 + AluSg/x SINE Alu 118 277 -32 204 40 0 0 chr1 267863532 267863557 -14330107 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 441 242 182 34 chr1 267863750 267864014 -14329650 - L1ME4a LINE L1 -266 5855 5553 1045 259 64 68 chr1 267864204 267864644 -14329020 - MLT1H LTR MaLR -110 439 2 6435 149 1 11 chr1 267864712 267865067 -14328597 - L1PB1 LINE L1 -5 6146 5789 246 62 0 0 chr1 267865067 267865099 -14328565 + (TG)n Simple_repeat Simple_repeat 2 33 0 6435 149 1 11 chr1 267865099 267865406 -14328258 - L1PB1 LINE L1 -362 5789 5480 180 77 0 0 chr1 267865406 267865432 -14328232 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2182 107 0 20 chr1 267865434 267865732 -14327932 - AluSx SINE Alu -20 292 1 6435 149 1 11 chr1 267865732 267866775 -14326889 - L1PB1 LINE L1 -672 5479 4456 1624 176 3 62 chr1 267866778 267867071 -14326593 + L1 LINE L1 4085 4353 -1793 2176 100 7 3 chr1 267867071 267867384 -14326280 + AluSx SINE Alu 1 312 0 1624 176 3 62 chr1 267867384 267867460 -14326204 + L1 LINE L1 4353 4432 -1714 274 380 67 7 chr1 267868186 267868336 -14325328 - L2 LINE L2 0 3272 3114 2203 120 7 0 chr1 267868440 267868749 -14324915 + AluSx SINE Alu 1 311 -1 277 246 0 0 chr1 267868754 267868823 -14324841 - MER92B LTR ERV1 -23 613 545 1845 223 50 50 chr1 267868840 267869400 -14324264 - MER92B LTR ERV1 -67 569 10 320 217 174 0 chr1 267869500 267869569 -14324095 + MER5A DNA MER1_type 29 109 -80 1683 207 169 18 chr1 267869777 267870227 -14323437 - MLT1F1 LTR MaLR 0 567 50 1241 111 0 41 chr1 267870242 267870413 -14323251 - U1 snRNA snRNA -1 164 1 23 54 0 0 chr1 267872080 267872117 -14321547 + AT_rich Low_complexity Low_complexity 1 37 0 913 209 0 0 chr1 267872402 267872565 -14321099 - MER58A DNA MER1_type -1 223 61 287 83 0 0 chr1 267872563 267872599 -14321065 - U2 snRNA snRNA -152 36 1 * 440 138 0 0 chr1 267872598 267872656 -14321008 - MER58A DNA MER1_type -32 75 18 2477 144 41 25 chr1 267872657 267873095 -14320569 + MER65A LTR ERV1 1 445 0 208 131 16 66 chr1 267873699 267873760 -14319904 + (TTTG)n Simple_repeat Simple_repeat 2 59 0 1407 145 102 0 chr1 267873778 267874013 -14319651 - AluJo SINE Alu -53 259 1 267 296 136 40 chr1 267874304 267874429 -14319235 - L2 LINE L2 -27 3245 3109 780 239 53 98 chr1 267875018 267875469 -14318195 - L1ME LINE L1 -369 5752 5322 4348 130 27 36 chr1 267875761 267876027 -14317637 + L1PA16 LINE L1 5430 5697 -469 2273 101 0 3 chr1 267876027 267876323 -14317341 + AluSg SINE Alu 1 295 -15 4348 130 27 36 chr1 267876323 267876800 -14316864 + L1PA16 LINE L1 5697 6166 0 22 0 0 0 chr1 267877067 267877089 -14316575 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr1 267877241 267877272 -14316392 + AT_rich Low_complexity Low_complexity 1 31 0 520 137 14 0 chr1 267877910 267877983 -14315681 + AluSx SINE Alu 2 75 -237 2863 128 72 16 chr1 267877983 267878467 -14315197 + MER9 LTR ERVK 1 511 0 1595 115 0 38 chr1 267878468 267878703 -14314961 + AluSx SINE Alu 71 296 -16 1535 209 101 24 chr1 267878742 267879307 -14314357 - L1ME LINE L1 -362 5800 5175 542 200 56 122 chr1 267879421 267879791 -14313873 - L1 LINE L1 -2019 4127 3800 2434 103 13 34 chr1 267879821 267880199 -14313465 - MSTA LTR MaLR 0 428 59 414 346 133 20 chr1 267880341 267880620 -14313044 + L2 LINE L2 2870 3197 -75 1785 179 3 13 chr1 267880620 267880932 -14312732 - AluJo SINE Alu -2 310 2 414 346 133 20 chr1 267880932 267880999 -14312665 + L2 LINE L2 3197 3255 -17 184 360 43 14 chr1 267881409 267881548 -14312116 + L3b LINE CR1 1319 1461 -122 454 183 150 110 chr1 267882240 267882298 -14311366 + MER112 DNA MER1_type 1 55 -201 1658 139 13 66 chr1 267882298 267882601 -14311063 + AluJo SINE Alu 16 302 -10 454 183 150 110 chr1 267882601 267882788 -14310876 + MER112 DNA MER1_type 55 256 0 241 45 23 23 chr1 267882872 267882916 -14310748 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1920 125 0 0 chr1 267882918 267883174 -14310490 - AluSx SINE Alu -30 282 27 580 315 40 15 chr1 267884303 267884503 -14309161 + MIR SINE MIR 17 221 -41 218 281 0 18 chr1 267884589 267884646 -14309018 + MER5A DNA MER1_type 130 185 -4 2296 299 109 38 chr1 267885206 267886137 -14307527 + L1MCc LINE L1 24 1052 -5371 2574 51 0 3 chr1 267886137 267886449 -14307215 + AluY SINE Alu 1 311 0 2296 299 109 38 chr1 267886449 267886649 -14307015 + L1MCc LINE L1 1052 1236 -5187 695 163 0 0 chr1 267886659 267886757 -14306907 + AluS SINE Alu 2 99 -214 1259 254 100 18 chr1 267886767 267887276 -14306388 + L1MCc LINE L1 1371 1940 -5001 195 42 0 0 chr1 267887276 267887300 -14306364 + (CA)n Simple_repeat Simple_repeat 2 25 0 1259 254 100 18 chr1 267887300 267887401 -14306263 + L1MCc LINE L1 1940 2031 -4910 * 3807 236 16 13 chr1 267887400 267887510 -14306154 - L1M4 LINE L1 -917 5727 5619 2624 48 0 3 chr1 267887510 267887819 -14305845 - AluY SINE Alu -3 308 1 3807 236 16 13 chr1 267887819 267888698 -14304966 - L1M4 LINE L1 -1025 5619 4735 293 195 0 24 chr1 267888701 267888783 -14304881 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2616 260 19 18 chr1 267888783 267889582 -14304082 - L1M4 LINE L1 -1913 4731 3932 867 251 36 61 chr1 267889575 267889905 -14303759 - L1M4 LINE L1 -6219 323 2 * 239 320 72 10 chr1 267890047 267890144 -14303520 + L2 LINE L2 3150 3252 -20 457 275 0 0 chr1 267890604 267890695 -14302969 - L2 LINE L2 0 3272 3182 2869 206 53 22 chr1 267893551 267894226 -14299438 - L1ME2 LINE L1 -14 6150 5455 2156 108 7 0 chr1 267894273 267894560 -14299104 + AluSg SINE Alu 3 291 -19 606 288 83 9 chr1 267895007 267895236 -14298428 - MIR SINE MIR 0 262 17 2261 218 52 57 chr1 267895293 267896066 -14297598 + L1M4b LINE L1 11 853 -6006 2192 109 0 7 chr1 267896066 267896377 -14297287 + AluSx SINE Alu 1 309 0 2261 218 52 57 chr1 267896377 267896417 -14297247 + L1M4b LINE L1 853 892 -5967 562 187 22 0 chr1 267897137 267897271 -14296393 + CT-rich Low_complexity Low_complexity 4 140 0 506 240 34 20 chr1 267898077 267898223 -14295441 + MER5B DNA MER1_type 28 175 -3 727 216 105 0 chr1 267898779 267898950 -14294714 - MER53 DNA DNA 0 189 1 218 225 0 14 chr1 267899446 267899517 -14294147 + (TG)n Simple_repeat Simple_repeat 1 70 0 1565 204 0 7 chr1 267900336 267900630 -14293034 + AluJb SINE Alu 1 292 -20 2015 112 10 20 chr1 267900632 267900937 -14292727 + AluSx SINE Alu 3 304 -8 968 156 56 0 chr1 267900937 267901097 -14292567 + AluJb SINE Alu 134 302 -10 2225 120 0 0 chr1 267902442 267902743 -14290921 + AluSg SINE Alu 2 302 -8 240 215 21 32 chr1 267903045 267903191 -14290473 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 355 288 23 8 chr1 267903215 267903347 -14290317 + L1ME4a LINE L1 5988 6121 0 360 289 21 0 chr1 267903754 267903851 -14289813 - MIR SINE MIR -112 150 52 271 286 24 12 chr1 267904680 267904764 -14288900 - L3 LINE CR1 -405 1172 1088 183 204 0 0 chr1 267904850 267904894 -14288770 + CT-rich Low_complexity Low_complexity 1 44 0 342 320 76 10 chr1 267904894 267905091 -14288573 - L1MC4a LINE L1 -1868 5940 5731 722 183 52 13 chr1 267905159 267905312 -14288352 - MER49 LTR ERV1 0 923 765 1234 145 77 5 chr1 267905317 267905524 -14288140 - MER49 LTR ERV1 -697 226 5 543 351 113 30 chr1 267905773 267906314 -14287350 - L1MC4a LINE L1 -816 5330 4745 23 33 0 0 chr1 267906543 267906573 -14287091 + AT_rich Low_complexity Low_complexity 1 30 0 1651 76 43 0 chr1 267906685 267906896 -14286768 + AluSc SINE Alu 1 220 -89 242 81 0 0 chr1 267906896 267906933 -14286731 + Alu SINE Alu 124 160 -6 236 340 43 11 chr1 267906948 267907042 -14286622 + MER5A DNA MER1_type 85 181 -8 2333 91 0 0 chr1 267907792 267908088 -14285576 - AluSg1 SINE Alu -13 296 1 378 0 0 0 chr1 267908495 267908537 -14285127 + (TG)n Simple_repeat Simple_repeat 2 43 0 385 265 114 8 chr1 267908545 267908677 -14284987 + MLT2F LTR ERVL 1 146 -517 603 206 30 23 chr1 267908696 267908827 -14284837 + MLT1E3 LTR MaLR 90 221 -403 4268 138 99 107 chr1 267908828 267910219 -14283445 - pTR5 LTR ERV1 0 2438 738 304 230 47 20 chr1 267910267 267910415 -14283249 + (TG)n Simple_repeat Simple_repeat 1 152 0 364 288 38 96 chr1 267912141 267912381 -14281283 + Charlie8 DNA MER1_type 10 235 -2182 294 244 67 11 chr1 267912553 267912643 -14281021 + Charlie8 DNA MER1_type 447 541 -1876 461 167 24 12 chr1 267912894 267912978 -14280686 + MER81 DNA DNA 1 85 -29 610 122 41 0 chr1 267914177 267914275 -14279389 + MSTB1 LTR MaLR 331 432 0 2177 128 40 0 chr1 267915249 267915602 -14278062 - L1MB3 LINE L1 -12 6171 5805 2300 159 26 19 chr1 267915799 267916221 -14277443 + MSTB1 LTR MaLR 4 428 -4 397 339 0 64 chr1 267917822 267918064 -14275600 + L2 LINE L2 73 294 -3020 2499 48 10 35 chr1 267918064 267918374 -14275290 - AluY SINE Alu -9 302 1 397 339 0 64 chr1 267918374 267918429 -14275235 + L2 LINE L2 294 351 -2963 847 134 40 0 chr1 267918444 267918593 -14275071 - L1MA6 LINE L1 0 6300 6146 576 171 0 43 chr1 267918593 267918710 -14274954 + L1MA6 LINE L1 6005 6116 -184 2509 286 124 64 chr1 267918715 267921524 -14272140 + L2 LINE L2 333 3312 -1 189 279 0 16 chr1 267922140 267922201 -14271463 + L2 LINE L2 3250 3309 -4 269 307 11 11 chr1 267922383 267922471 -14271193 - MLT1G1 LTR MaLR -243 352 265 192 77 0 0 chr1 267923497 267923523 -14270141 + (TCTCCC)n Simple_repeat Simple_repeat 2 27 0 1832 147 30 7 chr1 267923705 267924004 -14269660 + AluJo SINE Alu 3 308 -4 252 264 191 18 chr1 267924368 267924478 -14269186 - MER91A DNA MER1_type 0 196 68 257 314 52 26 chr1 267924609 267924803 -14268861 - MIR SINE MIR 0 262 64 703 191 25 75 chr1 267926365 267926432 -14267232 + MER53 DNA DNA 1 70 -119 2381 96 0 3 chr1 267926432 267926734 -14266930 + AluSx SINE Alu 1 301 -11 703 191 25 75 chr1 267926734 267926865 -14266799 + MER53 DNA DNA 70 189 0 322 282 18 27 chr1 267927078 267927188 -14266476 + CT-rich Low_complexity Low_complexity 2 110 0 237 65 0 0 chr1 267927864 267927895 -14265769 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2113 106 3 55 chr1 267927901 267928084 -14265580 - AluSx SINE Alu 0 312 152 2447 77 3 0 chr1 267928084 267928384 -14265280 - AluY SINE Alu -10 301 1 2113 106 3 55 chr1 267928384 267928529 -14265135 - AluSx SINE Alu -160 152 1 193 365 39 0 chr1 267929617 267929721 -14263943 - MIR3 SINE MIR -16 192 85 337 338 59 5 chr1 267929896 267930100 -14263564 - MIR SINE MIR -25 237 23 1914 180 67 80 chr1 267930637 267931148 -14262516 + MLT1D LTR MaLR 2 505 0 578 262 57 33 chr1 267931202 267931412 -14262252 - MLT1J LTR MaLR -7 504 290 1962 117 29 0 chr1 267931581 267931905 -14261759 + AluY SINE Alu 1 332 0 699 229 17 11 chr1 267932241 267932416 -14261248 - MIR SINE MIR -54 208 33 279 178 0 0 chr1 267932424 267932469 -14261195 - MLT1J LTR MaLR -466 45 1 1091 234 107 51 chr1 267932717 267933231 -14260433 - MLT1H LTR MaLR -3 546 4 180 0 0 0 chr1 267934224 267934244 -14259420 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1329 211 159 43 chr1 267934274 267934714 -14258950 - MER39 LTR ERV1 0 707 217 292 260 39 48 chr1 267934700 267934804 -14258860 - LTR48B LTR ERV1 -541 103 1 * 1207 183 96 115 chr1 267935545 267936172 -14257492 + MER4C LTR ERV1 1 465 0 8477 161 106 29 chr1 267936258 267937886 -14255778 + MER52A LTR ERV1 3 1755 0 458 321 131 26 chr1 267937922 267938265 -14255399 - MLT1J LTR MaLR -22 489 111 230 295 32 21 chr1 267938206 267938301 -14255363 - LTR67 LTR ERVL -382 175 80 * 240 179 71 0 chr1 267938399 267938455 -14255209 + MIR SINE MIR 203 262 0 365 252 79 58 chr1 267940115 267940142 -14253522 + MLT1J LTR MaLR 71 96 -415 4291 123 15 52 chr1 267940142 267940859 -14252805 - LTR8 LTR ERV1 0 691 1 365 252 79 58 chr1 267940859 267940970 -14252694 + MLT1J LTR MaLR 96 212 -299 5440 121 47 8 chr1 267940988 267941849 -14251815 - MER4D LTR ERV1 -9 894 1 909 236 23 71 chr1 267941849 267942158 -14251506 + MLT1J LTR MaLR 218 511 0 413 203 0 109 chr1 267943053 267943181 -14250483 + LTR38B LTR ERV1 1 114 -496 * 1149 233 113 81 chr1 267943156 267943713 -14249951 + LTR38 LTR ERV1 36 556 0 371 309 113 54 chr1 267943847 267944200 -14249464 + MLT1L LTR MaLR 3 376 -239 3679 167 70 18 chr1 267944281 267944964 -14248700 + MER72 LTR ERV1 4 722 0 252 143 0 0 chr1 267945656 267945698 -14247966 + (GAA)n Simple_repeat Simple_repeat 2 43 0 625 42 0 21 chr1 267946749 267946844 -14246820 + (GAAA)n Simple_repeat Simple_repeat 4 96 0 286 239 39 52 chr1 267947084 267947239 -14246425 + L2 LINE L2 1356 1508 -1806 319 321 148 33 chr1 267947319 267947624 -14246040 + L2 LINE L2 1706 2045 -1269 1205 161 55 0 chr1 267947629 267947828 -14245836 + MER21B LTR ERV1 7 216 -647 * 1301 223 8 4 chr1 267947822 267948082 -14245582 + MER21B LTR ERV1 603 863 0 758 295 216 17 chr1 267948101 267948620 -14245044 + L2 LINE L2 2052 2673 -641 1248 61 37 0 chr1 267949155 267949318 -14244346 - MER30 DNA MER1_type -61 169 1 1879 204 108 18 chr1 267949318 267949773 -14243891 + MER74A LTR ERVL 63 558 0 390 296 0 9 chr1 267950101 267950209 -14243455 + HAL1b LINE L1 500 606 -742 1375 138 39 22 chr1 267950296 267950527 -14243137 - MER46A DNA MER2_type -1 235 1 477 65 16 0 chr1 267950875 267950967 -14242697 + AluSg/x SINE Alu 219 311 0 4757 49 7 12 chr1 267952294 267952885 -14240779 - LTR10C LTR ERV1 0 591 4 25 31 0 0 chr1 267952890 267952922 -14240742 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr1 267953509 267953530 -14240134 + (TG)n Simple_repeat Simple_repeat 1 21 0 666 263 212 45 chr1 267954641 267955395 -14238269 - HAL1 LINE L1 -1 2506 1627 1770 118 57 4 chr1 267956461 267956741 -14236923 - Tigger2 DNA MER2_type -144 2574 2280 2308 73 14 0 chr1 267956765 267957052 -14236612 + AluSg SINE Alu 1 291 -19 355 200 0 0 chr1 267957052 267957107 -14236557 + MER8 DNA MER2_type 185 239 0 935 270 26 26 chr1 267957140 267957446 -14236218 - L1M4 LINE L1 -1371 4775 4467 2139 152 55 31 chr1 267957446 267957868 -14235796 + MSTB1 LTR MaLR 1 432 0 935 270 26 26 chr1 267957868 267958027 -14235637 - L1M4 LINE L1 -1678 4468 4310 437 266 43 21 chr1 267958097 267958285 -14235379 - L1M4 LINE L1 -1835 4311 4120 2323 153 21 23 chr1 267958662 267959047 -14234617 + MLT1C LTR MaLR 1 384 -83 318 106 0 0 chr1 267959544 267959591 -14234073 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 74 0 0 chr1 267959608 267959635 -14234029 + (GA)n Simple_repeat Simple_repeat 2 28 0 1403 230 58 26 chr1 267960167 267960545 -14233119 - MLT1B LTR MaLR 0 390 1 1283 191 67 39 chr1 267960688 267960970 -14232694 - AluJo SINE Alu -22 290 1 2713 79 8 3 chr1 267961285 267961638 -14232026 - THE1A LTR MaLR 0 355 1 268 316 43 8 chr1 267963402 267963519 -14230145 - MIR SINE MIR -63 145 25 266 288 86 61 chr1 267965226 267965422 -14228242 - L2 LINE L2 -20 3252 3043 2322 98 48 31 chr1 267965422 267965779 -14227885 - THE1B LTR MaLR -1 363 1 266 288 86 61 chr1 267965779 267965866 -14227798 - L2 LINE L2 -229 3043 2960 209 171 0 24 chr1 267966189 267966230 -14227434 - MIR SINE MIR -116 146 107 269 292 83 8 chr1 267966615 267966735 -14226929 + MIR SINE MIR 134 262 0 2043 135 4 0 chr1 267967255 267967563 -14226101 - AluSx SINE Alu 0 309 1 406 254 88 63 chr1 267967734 267967939 -14225725 + L1ME2 LINE L1 5841 6050 -114 309 275 0 11 chr1 267967988 267968079 -14225585 + MIR SINE MIR 151 240 -22 4511 260 46 27 chr1 267969555 267969714 -14223950 + ERVL-F LTR ERVL 1642 1797 -3967 579 227 61 6 chr1 267969714 267969877 -14223787 - MER96 DNA MER1_type 0 175 4 4511 260 46 27 chr1 267969877 267970860 -14222804 + ERVL-F LTR ERVL 1797 2760 -3004 2072 254 23 10 chr1 267970860 267971372 -14222292 + LTR40a LTR ERVL 1 519 0 4511 260 46 27 chr1 267971372 267971532 -14222132 + ERVL-F LTR ERVL 2760 2973 -2791 2275 99 7 0 chr1 267971532 267971826 -14221838 - AluSx SINE Alu -16 296 1 4511 260 46 27 chr1 267971826 267971854 -14221810 + ERVL-F LTR ERVL 2973 2999 -2765 1377 288 74 10 chr1 267971929 267972416 -14221248 + ERVL-F LTR ERVL 4450 4967 -797 1372 92 12 0 chr1 267972418 267972591 -14221073 + AluY SINE Alu 1 175 -136 2086 79 0 69 chr1 267972613 267972904 -14220760 - AluSc SINE Alu -34 275 5 1548 75 10 0 chr1 267972917 267973116 -14220548 - AluSq SINE Alu 0 313 113 328 291 8 31 chr1 267973123 267973250 -14220414 + ERVL-F LTR ERVL 5592 5715 -49 900 286 181 28 chr1 267973291 267973854 -14219810 + MLT2F LTR ERVL 1 649 -14 1098 210 9 5 chr1 267974251 267974475 -14219189 + MLT2D LTR ERVL 2 226 -188 474 178 186 51 chr1 267974476 267974594 -14219070 + MLT2D LTR ERVL 331 464 0 1956 132 4 0 chr1 267974693 267975009 -14218655 + AluSx SINE Alu 1 317 0 539 325 91 0 chr1 267975057 267975254 -14218410 + L2 LINE L2 2838 3052 -261 254 308 86 8 chr1 267975986 267976103 -14217561 - MLT1L LTR MaLR -59 556 431 404 181 14 0 chr1 267976150 267976222 -14217442 - LTR67 LTR ERVL -477 80 8 255 297 11 33 chr1 267976233 267976324 -14217340 + MIR SINE MIR 160 248 -14 420 222 46 79 chr1 267976462 267976678 -14216986 + L1MC5 LINE L1 7346 7554 -407 576 92 58 100 chr1 267976691 267976811 -14216853 - L1M3 LINE L1 -634 5537 5423 219 260 10 87 chr1 267977157 267977261 -14216403 - L2 LINE L2 -54 3259 3164 1927 138 138 44 chr1 267977326 267977427 -14216237 + LTR47A LTR ERVL 1 91 -361 2686 33 0 0 chr1 267977427 267977726 -14215938 + AluY SINE Alu 2 300 -11 1927 138 138 44 chr1 267977726 267978037 -14215627 + LTR47A LTR ERVL 91 452 0 218 324 10 29 chr1 267978060 267978162 -14215502 - L2 LINE L2 -263 3009 2910 325 259 0 0 chr1 267979651 267979709 -14213955 + MER7A DNA MER2_type 2 59 -289 875 114 0 0 chr1 267979710 267979824 -14213840 + AluJb SINE Alu 5 118 -194 1294 158 6 149 chr1 267979838 267980161 -14213503 + MER7A DNA MER2_type 65 339 -7 431 208 174 34 chr1 267980244 267980393 -14213271 + MIR SINE MIR 92 261 -1 688 199 6 6 chr1 267980711 267980877 -14212787 + GA-rich Low_complexity Low_complexity 4 169 0 213 428 18 12 chr1 267981692 267981858 -14211806 + MIR SINE MIR 46 212 -50 277 122 0 0 chr1 267981883 267981924 -14211740 + MLT1F1 LTR MaLR 1 41 -526 1221 230 122 56 chr1 267982049 267982510 -14211154 + MER101B LTR ERV1 13 503 -67 1040 266 213 68 chr1 267982597 267983142 -14210522 - MLT1E2 LTR MaLR -25 629 6 384 171 29 0 chr1 267983390 267983460 -14210204 - AluSc SINE Alu 0 299 228 2107 125 0 10 chr1 267983509 267983814 -14209850 - AluSc SINE Alu -7 302 1 1032 255 83 7 chr1 267984141 267984760 -14208904 + L2 LINE L2 2607 3279 -34 194 329 119 56 chr1 267984769 267984824 -14208840 - L2 LINE L2 -37 3235 3185 2118 104 37 13 chr1 267984824 267985123 -14208541 - AluSx SINE Alu -6 306 1 194 329 119 56 chr1 267985123 267985319 -14208345 - L2 LINE L2 -87 3185 2968 557 261 73 50 chr1 267985415 267985633 -14208031 - MLT1K LTR MaLR -355 233 11 1451 211 27 44 chr1 267986391 267986756 -14206908 - MLT1A2 LTR MaLR -11 363 5 265 207 72 72 chr1 267986887 267986998 -14206666 - L1ME3A LINE L1 -2 6168 6058 410 237 16 86 chr1 267987823 267987923 -14205741 + MER5B DNA MER1_type 1 84 -94 1593 164 241 5 chr1 267987923 267988325 -14205339 + LTR54B LTR ERV1 1 497 -1 410 237 16 86 chr1 267988325 267988410 -14205254 + MER5B DNA MER1_type 84 173 -5 749 257 66 26 chr1 267989185 267989457 -14204207 - Charlie4a DNA MER1_type -188 320 38 390 281 64 15 chr1 267990201 267990405 -14203259 - HAL1 LINE L1 -7 2500 2090 1684 190 7 3 chr1 267990405 267990710 -14202954 - AluJo SINE Alu -2 310 5 999 172 22 0 chr1 267990713 267990893 -14202771 - AluJb SINE Alu -9 303 120 1525 275 26 7 chr1 267991063 267991478 -14202186 + LTR16C LTR ERVL 69 491 0 585 277 73 56 chr1 267991773 267992279 -14201385 - L1ME4a LINE L1 -3 6118 5605 567 268 0 13 chr1 267992791 267992948 -14200716 + MIR SINE MIR 73 227 -35 213 94 0 0 chr1 267993728 267993760 -14199904 + (T)n Simple_repeat Simple_repeat 1 32 0 1002 201 0 0 chr1 267995108 267995292 -14198372 - L1M4 LINE L1 -1954 4192 4009 1966 222 50 2 chr1 267995308 267995848 -14197816 - L1M4 LINE L1 -2398 3748 3183 397 333 112 8 chr1 267995864 267996122 -14197542 - L2 LINE L2 -35 3278 2994 402 260 186 38 chr1 267996396 267996656 -14197008 + L2 LINE L2 2737 3028 -285 2018 133 67 25 chr1 267997292 267997652 -14196012 + THE1C LTR MaLR 1 375 0 1923 161 3 13 chr1 267998134 267998444 -14195220 + AluSx SINE Alu 1 307 -5 2354 107 0 0 chr1 267998539 267998847 -14194817 - AluSg SINE Alu -2 308 1 32 26 0 0 chr1 267999069 267999108 -14194556 + AT_rich Low_complexity Low_complexity 1 39 0 458 294 95 49 chr1 267999862 268000189 -14193475 - L1ME4a LINE L1 -1054 5092 4751 536 171 241 12 chr1 268000256 268000426 -14193238 - MIR SINE MIR -2 260 52 1817 228 117 41 chr1 268001912 268002041 -14191623 - L1MC4 LINE L1 -2 8040 7922 372 22 0 0 chr1 268002041 268002086 -14191578 + (TG)n Simple_repeat Simple_repeat 2 46 0 1817 228 117 41 chr1 268002086 268002714 -14190950 - L1MC4 LINE L1 -120 7922 7225 364 314 85 31 chr1 268003514 268003737 -14189927 + MIR SINE MIR 28 262 0 21 89 0 0 chr1 268004687 268004743 -14188921 + AT_rich Low_complexity Low_complexity 1 56 0 232 275 35 49 chr1 268004773 268004915 -14188749 + L1ME LINE L1 5522 5661 -460 1645 180 105 6 chr1 268007157 268007501 -14186163 - MLT1F1 LTR MaLR 0 567 190 323 164 75 0 chr1 268007887 268007954 -14185710 + MLT1F LTR MaLR 8 79 -463 342 247 22 11 chr1 268008793 268008839 -14184825 + MER3 DNA MER1_type 1 47 -162 261 215 0 51 chr1 268008839 268008918 -14184746 - MER3 DNA MER1_type 0 209 135 383 220 54 2 chr1 268008921 268009024 -14184640 - Charlie5 DNA MER1_type -2489 123 18 225 301 183 0 chr1 268009053 268009206 -14184458 + MER5A DNA MER1_type 9 189 0 805 268 92 14 chr1 268009745 268010029 -14183635 - L2 LINE L2 0 3313 3008 26 30 0 0 chr1 268010494 268010527 -14183137 + AT_rich Low_complexity Low_complexity 1 33 0 273 108 0 0 chr1 268010570 268010607 -14183057 - Alu SINE Alu -264 37 1 1615 199 3 3 chr1 268010636 268010932 -14182732 - AluJb SINE Alu -16 296 1 218 284 25 12 chr1 268010934 268011015 -14182649 + MIR3 SINE MIR 116 197 -11 665 224 118 7 chr1 268011561 268011713 -14181951 + L1MDa LINE L1 -138 30 -6352 3176 182 87 18 chr1 268011716 268012729 -14180935 + L1MDa LINE L1 895 2019 -4363 240 300 57 0 chr1 268012864 268012934 -14180730 - L2 LINE L2 0 3313 3240 992 181 68 0 chr1 268012934 268013139 -14180525 - MSTD LTR MaLR -177 219 1 1293 128 47 8 chr1 268014349 268014583 -14179081 - L1MA6 LINE L1 0 6300 6058 21 0 0 0 chr1 268016968 268016989 -14176675 + AT_rich Low_complexity Low_complexity 1 21 0 295 336 55 8 chr1 268018491 268018619 -14175045 - MIR SINE MIR -116 146 13 253 306 132 0 chr1 268019066 268019187 -14174477 - L2 LINE L2 -922 2392 2256 2458 83 0 3 chr1 268019921 268020222 -14173442 - AluSg SINE Alu -10 300 1 243 0 0 0 chr1 268022314 268022341 -14171323 + (T)n Simple_repeat Simple_repeat 1 27 0 329 270 30 10 chr1 268025011 268025111 -14168553 - MER81 DNA DNA -1 113 12 22 0 0 0 chr1 268026626 268026648 -14167016 + AT_rich Low_complexity Low_complexity 1 22 0 2524 54 0 0 chr1 268027378 268027672 -14165992 + AluY SINE Alu 1 294 -17 265 221 128 60 chr1 268028954 268029103 -14164561 + MER115 DNA AcHobo 142 300 -393 303 294 96 42 chr1 268029343 268029667 -14163997 - L2 LINE L2 -203 3110 2752 2251 209 13 4 chr1 268029667 268030130 -14163534 + MLT1C LTR MaLR 1 467 0 303 294 96 42 chr1 268030130 268030216 -14163448 - L2 LINE L2 -561 2752 2672 390 313 9 0 chr1 268030785 268030897 -14162767 + MIR SINE MIR 9 121 -141 1606 132 79 32 chr1 268030899 268031239 -14162425 + THE1C LTR MaLR 18 373 -2 10363 117 18 33 chr1 268031244 268032841 -14160823 + THE1C-int LTR MaLR 4 1576 -4 1694 129 109 37 chr1 268032845 268033195 -14160469 + THE1C LTR MaLR 1 375 0 293 336 36 29 chr1 268033196 268033336 -14160328 + MIR SINE MIR 120 260 -2 360 253 21 65 chr1 268033680 268033866 -14159798 + HAL1 LINE L1 2320 2497 -10 2037 91 0 15 chr1 268034103 268034367 -14159297 - AluSq SINE Alu -53 260 1 211 178 14 27 chr1 268034783 268034856 -14158808 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1076 164 25 50 chr1 268034861 268035238 -14158426 + MER4A LTR ERV1 1 264 -201 837 209 40 33 chr1 268035216 268035489 -14158175 + MER4C LTR ERV1 270 465 0 * 2135 86 4 4 chr1 268037646 268037915 -14155749 - AluSp SINE Alu 0 313 45 952 108 0 43 chr1 268039236 268039375 -14154289 - FRAM SINE Alu -15 161 29 2315 89 3 0 chr1 268039403 268039730 -14153934 + AluSp SINE Alu 1 328 0 8508 64 21 1 chr1 268040495 268042356 -14151308 + L1PA7 LINE L1 4274 6154 0 375 198 12 0 chr1 268044661 268044742 -14148922 + MER20 DNA MER1_type 138 219 0 498 235 147 22 chr1 268045294 268045430 -14148234 + FAM SINE Alu 6 158 -27 2146 126 0 10 chr1 268045736 268046046 -14147618 - AluSx SINE Alu -5 307 1 1106 90 0 0 chr1 268046051 268046184 -14147480 - AluSq/x SINE Alu -179 133 1 296 288 180 45 chr1 268047237 268047459 -14146205 + MIR SINE MIR 1 252 -10 24 85 0 0 chr1 268047653 268047712 -14145952 + AT_rich Low_complexity Low_complexity 1 59 0 304 302 74 34 chr1 268047859 268048008 -14145656 - MER5A DNA MER1_type -30 159 5 194 271 150 29 chr1 268048637 268048777 -14144887 - L3b LINE CR1 -196 1387 1231 527 290 48 4 chr1 268049308 268049597 -14144067 + L1M4 LINE L1 3686 3989 -2157 326 68 0 0 chr1 268049650 268049694 -14143970 - L1PA10 LINE L1 -6 6162 6119 2783 166 72 76 chr1 268049694 268050388 -14143276 + MER21A LTR ERV1 241 931 0 684 247 36 0 chr1 268051948 268052114 -14141550 - MER5B DNA MER1_type -5 173 2 203 299 60 0 chr1 268052327 268052394 -14141270 - L2 LINE L2 -1605 1709 1639 235 354 24 0 chr1 268052522 268052604 -14141060 - MIR SINE MIR -17 245 162 239 318 24 24 chr1 268053080 268053165 -14140499 - L3 LINE CR1 -96 1481 1397 1568 169 10 75 chr1 268053479 268053622 -14140042 + AluJo SINE Alu 4 118 -194 2296 100 20 0 chr1 268053622 268053921 -14139743 + AluSx SINE Alu 1 305 -7 1568 169 10 75 chr1 268053921 268054085 -14139579 + AluJo SINE Alu 118 291 -21 208 231 0 0 chr1 268054563 268054602 -14139062 + polypyrimidine Low_complexity Low_complexity 3 41 0 2622 50 3 0 chr1 268055520 268055821 -14137843 - AluY SINE Alu -9 302 1 1721 139 21 31 chr1 268056220 268056528 -14137136 - AluJo SINE Alu 0 305 1 250 316 0 13 chr1 268057690 268057769 -14135895 + MIR SINE MIR 150 227 -35 716 96 0 0 chr1 268059622 268059716 -14133948 + AluSg/x SINE Alu 205 298 -14 238 293 49 0 chr1 268059717 268059799 -14133865 + MER5A DNA MER1_type 72 157 -32 2421 94 3 0 chr1 268060891 268061200 -14132464 - AluSx SINE Alu 0 312 3 456 236 140 22 chr1 268061436 268061614 -14132050 + MLT1J LTR MaLR 3 201 -310 1694 158 4 11 chr1 268062158 268062418 -14131246 - AluJo SINE Alu -52 260 3 281 268 28 0 chr1 268063936 268064007 -14129657 + MIR SINE MIR 72 144 -118 184 212 0 0 chr1 268064087 268064120 -14129544 + L2 LINE L2 3149 3181 -91 3187 275 114 21 chr1 268064218 268065577 -14128087 - L2 LINE L2 -58 3255 1773 345 186 32 41 chr1 268065581 268065689 -14127975 - L1MEc LINE L1 -1967 4248 4141 288 302 18 35 chr1 268065675 268065844 -14127820 - L1MEc LINE L1 -2925 3290 3125 * 627 196 0 75 chr1 268065844 268066017 -14127647 - MER58C DNA MER1_type 0 215 56 2631 281 48 55 chr1 268066033 268067045 -14126619 - L1MEc LINE L1 -3084 3131 2114 2334 97 0 3 chr1 268067045 268067343 -14126321 - AluSg SINE Alu -13 297 1 2631 281 48 55 chr1 268067343 268069441 -14124223 - L1MEc LINE L1 -4101 2114 44 21 0 0 0 chr1 268069991 268070012 -14123652 + AT_rich Low_complexity Low_complexity 1 21 0 2280 78 3 3 chr1 268070293 268070608 -14123056 - AluSp SINE Alu 0 315 1 229 261 0 15 chr1 268070826 268070891 -14122773 + (TG)n Simple_repeat Simple_repeat 1 64 0 1780 168 24 38 chr1 268072052 268072137 -14121527 + MLT1A1 LTR MaLR 1 86 -279 2344 98 0 0 chr1 268072137 268072443 -14121221 + AluSc SINE Alu 1 306 -3 1780 168 24 38 chr1 268072443 268072727 -14120937 + MLT1A1 LTR MaLR 86 365 0 197 250 44 15 chr1 268074412 268074480 -14119184 - MIR3 SINE MIR -5 203 134 2352 91 3 0 chr1 268074554 268074850 -14118814 + AluSx SINE Alu 1 297 -15 1130 201 126 7 chr1 268075536 268075708 -14117956 - AluJo SINE Alu -1 301 84 213 39 0 0 chr1 268075708 268075734 -14117930 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1130 201 126 7 chr1 268075734 268075830 -14117834 - AluJo SINE Alu -218 84 1 197 219 78 31 chr1 268076871 268076935 -14116729 - L2 LINE L2 -800 2514 2448 481 318 49 23 chr1 268077480 268077721 -14115943 + MIR SINE MIR 4 248 -14 306 277 89 18 chr1 268077742 268077854 -14115810 - L2 LINE L2 -8 3264 3145 1844 270 113 38 chr1 268078708 268079492 -14114172 + L2 LINE L2 418 1260 -2054 291 133 17 17 chr1 268079493 268079505 -14114159 - MER46A DNA MER2_type -80 156 145 1176 162 0 0 chr1 268079505 268079696 -14113968 + Tigger4(Zombi) DNA MER2_type 1 191 -2540 * 3933 145 5 1 chr1 268079695 268080359 -14113305 + Tigger4(Zombi) DNA MER2_type 2066 2731 0 265 247 206 0 chr1 268081157 268081254 -14112410 + MIR SINE MIR 15 132 -76 7697 22 0 7 chr1 268081618 268082662 -14111002 - L1PA3 LINE L1 -7 6148 5108 2335 106 0 0 chr1 268082872 268083174 -14110490 - AluSq SINE Alu -11 302 1 854 281 91 47 chr1 268083343 268083748 -14109916 + MLT1J1 LTR MaLR 21 443 -3 950 292 66 29 chr1 268083808 268084250 -14109414 + LTR67 LTR ERVL 100 557 0 433 299 11 42 chr1 268085062 268085323 -14108341 + MLT1H LTR MaLR 93 345 -204 7866 219 41 14 chr1 268085736 268086380 -14107284 + L1 LINE L1 2312 2937 -3209 2101 132 3 0 chr1 268086380 268086676 -14106988 + AluSx SINE Alu 1 297 -15 7866 219 41 14 chr1 268086676 268088068 -14105596 + L1 LINE L1 2937 4412 -1734 225 0 0 0 chr1 268088068 268088093 -14105571 + (CA)n Simple_repeat Simple_repeat 2 26 0 7866 219 41 14 chr1 268088093 268088227 -14105437 + L1 LINE L1 4412 4541 -1605 1800 54 0 0 chr1 268088229 268088451 -14105213 + L1PA7 LINE L1 5928 6149 -5 * 5602 112 8 25 chr1 268088447 268090061 -14103603 + L1PA16 LINE L1 4549 6157 -9 266 359 0 0 chr1 268090887 268090965 -14102699 + L2 LINE L2 3234 3311 -2 463 324 123 32 chr1 268091027 268091836 -14101828 + L2 LINE L2 2384 3313 0 346 270 43 17 chr1 268091982 268092097 -14101567 - MIR SINE MIR -50 212 95 22 99 0 0 chr1 268092959 268093030 -14100634 + AT_rich Low_complexity Low_complexity 1 71 0 367 209 22 11 chr1 268093074 268093165 -14100499 - L1ME1 LINE L1 -5 6161 6070 826 236 99 20 chr1 268093166 268093550 -14100114 - L1ME1 LINE L1 -291 5875 5441 1759 148 65 7 chr1 268095793 268096071 -14097593 + AluSx SINE Alu 1 294 -18 269 149 15 45 chr1 268096647 268096714 -14096950 + MER116 DNA Mariner 14 78 -2 2295 111 3 0 chr1 268096861 268097168 -14096496 - AluSc SINE Alu -1 308 1 393 270 20 101 chr1 268097178 268097474 -14096190 + L2 LINE L2 2841 3112 -160 945 251 24 16 chr1 268097510 268097757 -14095907 - MIR SINE MIR 0 262 14 275 119 0 0 chr1 268097845 268097887 -14095777 + L2 LINE L2 3268 3309 -4 2503 81 0 0 chr1 268099957 268100264 -14093400 - AluSx SINE Alu -5 307 1 340 333 71 42 chr1 268100396 268100892 -14092772 - L1MEd LINE L1 -3403 2726 2217 287 291 0 0 chr1 268101037 268101154 -14092510 + L1M4 LINE L1 3336 3452 -2694 2033 121 4 4 chr1 268101159 268101440 -14092224 + AluSx SINE Alu 1 281 -31 252 296 14 0 chr1 268101557 268101628 -14092036 + GA-rich Low_complexity Low_complexity 2 73 0 1265 282 105 60 chr1 268101854 268103029 -14090635 - L1MEd LINE L1 -4886 1233 6 27 73 0 0 chr1 268103181 268103236 -14090428 + AT_rich Low_complexity Low_complexity 1 55 0 1053 266 99 6 chr1 268103668 268104033 -14089631 + L1MD1 LINE L1 26 424 -6116 2303 216 204 66 chr1 268104038 268104915 -14088749 + MER52A LTR ERV1 663 1660 -95 5333 187 139 58 chr1 268104952 268105687 -14087977 + L1MD1 LINE L1 587 1260 -5280 2041 148 3 0 chr1 268105687 268105978 -14087686 - AluSx SINE Alu -20 292 1 5333 187 139 58 chr1 268105978 268107149 -14086515 + L1MD1 LINE L1 1260 2649 -3891 4315 251 35 40 chr1 268107181 268108960 -14084704 + L1MD1 LINE L1 2637 4407 -2133 2440 65 3 3 chr1 268108960 268109266 -14084398 + AluY SINE Alu 1 306 -5 4315 251 35 40 chr1 268109266 268109353 -14084311 + L1MD1 LINE L1 4407 4493 -2047 5857 97 44 6 chr1 268109369 268110734 -14082930 - L1PA13 LINE L1 -8 6155 4748 3400 224 55 27 chr1 268110755 268111679 -14081985 - L1M4 LINE L1 -2146 4000 3103 756 174 8 0 chr1 268111679 268111800 -14081864 - FLAM_A SINE Alu -10 123 2 3400 224 55 27 chr1 268111800 268111811 -14081853 - L1M4 LINE L1 -3043 3103 3094 1324 223 3 38 chr1 268111811 268112127 -14081537 - AluJo SINE Alu 0 306 1 3400 224 55 27 chr1 268112127 268112474 -14081190 - L1M4 LINE L1 -3052 3094 2680 3869 173 36 74 chr1 268112478 268112518 -14081146 + L1MD1 LINE L1 5552 5592 -1044 2840 6 0 3 chr1 268112518 268112829 -14080835 + AluYa5 SINE Alu 1 310 -1 3869 173 36 74 chr1 268112829 268113902 -14079762 + L1MD1 LINE L1 5592 6615 -21 387 0 0 0 chr1 268113902 268113945 -14079719 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr1 268115918 268115949 -14077715 + AT_rich Low_complexity Low_complexity 1 31 0 2162 113 0 16 chr1 268117448 268117757 -14075907 + AluSg SINE Alu 1 304 -6 778 284 84 31 chr1 268117803 268118123 -14075541 - MLT1K LTR MaLR -8 580 244 387 89 0 0 chr1 268118588 268118644 -14075020 + (CA)n Simple_repeat Simple_repeat 1 56 0 1867 180 13 32 chr1 268118647 268119019 -14074645 - MLT1A1 LTR MaLR 0 365 1 2348 110 0 0 chr1 268119272 268119580 -14074084 + AluSg1 SINE Alu 1 308 -1 300 27 0 0 chr1 268120190 268120227 -14073437 + (TG)n Simple_repeat Simple_repeat 2 38 0 506 291 24 18 chr1 268120266 268120431 -14073233 + MIR SINE MIR 28 193 -69 216 286 18 0 chr1 268120482 268120538 -14073126 + (CTA)n Simple_repeat Simple_repeat 1 57 0 288 320 76 23 chr1 268121092 268121264 -14072400 + L3 LINE CR1 708 888 -689 218 287 193 28 chr1 268121393 268121714 -14071950 + L3 LINE CR1 1103 1476 -101 249 196 54 0 chr1 268122309 268122365 -14071299 - MIR SINE MIR -58 150 92 2264 105 3 0 chr1 268123258 268123553 -14070111 + AluSg SINE Alu 1 296 -14 604 292 95 56 chr1 268123678 268124220 -14069444 + MLT1F1 LTR MaLR 5 560 -7 246 291 172 26 chr1 268124439 268124492 -14069172 - L2 LINE L2 -456 2858 2814 1146 167 5 59 chr1 268124492 268124581 -14069083 - MER3 DNA MER1_type 0 209 117 2312 61 0 47 chr1 268124581 268124914 -14068750 + AluY SINE Alu 1 319 0 1146 167 5 59 chr1 268124914 268125044 -14068620 - MER3 DNA MER1_type -92 117 1 246 291 172 26 chr1 268125044 268125217 -14068447 - L2 LINE L2 -500 2814 2599 549 251 148 16 chr1 268127056 268127239 -14066425 - MIR SINE MIR -22 240 34 1061 164 0 0 chr1 268129790 268129955 -14063709 + FRAM SINE Alu 1 163 -13 311 302 218 18 chr1 268129999 268130224 -14063440 - L3b LINE CR1 -115 1468 1199 2279 106 0 3 chr1 268130992 268131304 -14062360 - AluY SINE Alu 0 311 1 445 276 21 73 chr1 268133000 268133192 -14060472 - MER5A DNA MER1_type -2 187 6 21 0 0 0 chr1 268134951 268134972 -14058692 + AT_rich Low_complexity Low_complexity 1 21 0 197 228 18 18 chr1 268135020 268135077 -14058587 + L3b LINE CR1 1156 1212 -371 256 305 0 30 chr1 268135454 268135585 -14058079 + GA-rich Low_complexity Low_complexity 4 130 0 448 231 15 53 chr1 268136958 268137162 -14056502 + MIR SINE MIR 18 254 -8 536 279 19 19 chr1 268137226 268137387 -14056277 - MIR3 SINE MIR -46 162 2 2336 96 0 16 chr1 268138336 268138650 -14055014 + AluSx SINE Alu 1 309 -3 3815 153 27 12 chr1 268140305 268141329 -14052335 - L1MA4 LINE L1 -359 5941 4907 5812 108 17 13 chr1 268141342 268142179 -14051485 - L1MA2 LINE L1 0 6304 5465 301 188 0 0 chr1 268142179 268142227 -14051437 - MER5A DNA MER1_type -141 48 1 684 282 78 49 chr1 268142309 268143263 -14050401 + L1MDa LINE L1 2443 3427 -3113 392 312 75 34 chr1 268143331 268143623 -14050041 + L1MDa LINE L1 4099 4402 -2138 2076 113 0 0 chr1 268144553 268144837 -14048827 - AluY SINE Alu -7 304 21 243 0 0 0 chr1 268145392 268145419 -14048245 + (CA)n Simple_repeat Simple_repeat 2 28 0 834 166 22 7 chr1 268145458 268145624 -14048040 + AluJb SINE Alu 146 313 0 326 288 74 95 chr1 268145795 268145955 -14047709 + L1MCa LINE L1 145 307 -6257 4237 109 2 0 chr1 268145955 268146506 -14047158 + MER41A LTR ERV1 3 554 0 326 288 74 95 chr1 268146506 268146682 -14046982 + L1MCa LINE L1 307 474 -6090 2199 250 99 46 chr1 268147091 268148038 -14045626 + L1MCa LINE L1 535 1658 -4906 1790 118 96 11 chr1 268148038 268148318 -14045346 + AluSx SINE Alu 1 304 -8 2199 250 99 46 chr1 268148318 268149012 -14044652 + L1MCa LINE L1 1658 2314 -4250 52 0 0 0 chr1 268149012 268149064 -14044600 + AT_rich Low_complexity Low_complexity 1 52 0 569 315 80 4 chr1 268149335 268149573 -14044091 + MIR SINE MIR 4 259 -3 1778 173 20 3 chr1 268149608 268149909 -14043755 - AluJo SINE Alu -6 306 1 810 296 80 61 chr1 268152155 268152736 -14040928 - L2 LINE L2 -20 3293 2706 1760 246 47 57 chr1 268152738 268153906 -14039758 + L1MCa LINE L1 1 1064 -4981 8040 225 58 47 chr1 268153909 268155555 -14038109 + L1MCa LINE L1 2434 4061 -2503 1838 82 112 4 chr1 268155555 268155823 -14037841 + AluYa8 SINE Alu 1 297 -13 8040 225 58 47 chr1 268155823 268155934 -14037730 + L1MCa LINE L1 4061 4169 -2395 2786 7 0 0 chr1 268155934 268156232 -14037432 + AluYa5 SINE Alu 1 298 -13 8040 225 58 47 chr1 268156232 268157481 -14036183 + L1MCa LINE L1 4169 5466 -1098 777 471 30 3 chr1 268157487 268157784 -14035880 + AluY SINE Alu 7 311 0 1534 198 42 31 chr1 268157802 268158326 -14035338 + L1MD1 LINE L1 5256 5953 -289 483 196 56 18 chr1 268158322 268158433 -14035231 + L1MCa LINE L1 2378 2492 -3934 * 1842 247 25 41 chr1 268158542 268159173 -14034491 + L1M4 LINE L1 4267 4887 -1259 245 277 0 0 chr1 268159174 268159221 -14034443 - MER2 DNA MER2_type -298 47 1 4762 159 134 97 chr1 268159221 268159663 -14034001 + L1MC3 LINE L1 6401 6825 -960 315 0 0 0 chr1 268159663 268159698 -14033966 + (CA)n Simple_repeat Simple_repeat 2 36 0 4762 159 134 97 chr1 268159698 268159912 -14033752 + L1MC3 LINE L1 6825 7030 -755 341 255 21 21 chr1 268159912 268160006 -14033658 + MLT1K LTR MaLR 32 125 -442 4762 159 134 97 chr1 268160006 268160117 -14033547 + L1MC3 LINE L1 7030 7135 -650 2174 112 7 3 chr1 268160117 268160412 -14033252 - AluSq SINE Alu -17 296 1 4762 159 134 97 chr1 268160412 268160884 -14032780 + L1MC3 LINE L1 7135 7785 0 2431 67 0 10 chr1 268160889 268161186 -14032478 + AluSg SINE Alu 1 294 -16 339 291 92 48 chr1 268162705 268162932 -14030732 + L2 LINE L2 1886 2122 -1192 895 305 89 57 chr1 268163151 268163517 -14030147 + MLT1K LTR MaLR 136 520 -68 2279 105 0 0 chr1 268163517 268163812 -14029852 + AluSx SINE Alu 1 295 -17 895 305 89 57 chr1 268163812 268163884 -14029780 + MLT1K LTR MaLR 520 588 0 271 286 39 62 chr1 268163885 268164063 -14029601 + L1MC4a LINE L1 5722 5895 -1913 305 24 24 0 chr1 268164086 268164128 -14029536 + (TG)n Simple_repeat Simple_repeat 2 44 0 25 0 0 0 chr1 268164298 268164323 -14029341 + AT_rich Low_complexity Low_complexity 1 25 0 544 352 67 41 chr1 268164379 268165025 -14028639 + L2 LINE L2 2335 3009 -263 771 253 84 9 chr1 268165191 268165416 -14028248 + MIR SINE MIR 21 262 0 226 216 137 0 chr1 268165439 268165490 -14028174 + L2 LINE L2 3210 3267 -5 2241 128 0 0 chr1 268165912 268166224 -14027440 - AluSx SINE Alu 0 312 1 5740 125 290 25 chr1 268166539 268167880 -14025784 + pTR5 LTR ERV1 743 2438 0 360 0 0 0 chr1 268168055 268168095 -14025569 + (TG)n Simple_repeat Simple_repeat 1 40 0 2148 91 4 0 chr1 268168095 268168371 -14025293 - AluY SINE Alu -33 278 2 21 36 0 0 chr1 268168965 268168993 -14024671 + AT_rich Low_complexity Low_complexity 1 28 0 2092 91 0 81 chr1 268169532 268169852 -14023812 - AluSx SINE Alu -18 294 1 237 257 89 20 chr1 268170362 268170463 -14023201 - MIR SINE MIR -105 157 50 2088 144 0 0 chr1 268170482 268170788 -14022876 - AluSq SINE Alu -7 306 1 1688 160 0 15 chr1 268171163 268171425 -14022239 + AluJo SINE Alu 1 258 -54 27 73 0 0 chr1 268171644 268171699 -14021965 + AT_rich Low_complexity Low_complexity 1 55 0 432 193 0 0 chr1 268172157 268172266 -14021398 + GA-rich Low_complexity Low_complexity 4 112 0 312 304 81 37 chr1 268172890 268173051 -14020613 - MIR SINE MIR -83 179 12 3146 172 5 16 chr1 268174663 268175268 -14018396 + MER6A DNA MER2_type 1 598 -7 294 351 18 9 chr1 268178021 268178132 -14015532 + MIR SINE MIR 18 129 -133 2066 122 3 23 chr1 268178974 268179277 -14014387 + AluSx SINE Alu 1 297 -15 442 186 0 34 chr1 268179277 268179395 -14014269 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 450 360 88 21 chr1 268180133 268180783 -14012881 + L2 LINE L2 1706 2398 -916 187 137 118 78 chr1 268180842 268180893 -14012771 - MER5B DNA MER1_type -6 172 120 466 224 37 19 chr1 268180947 268181054 -14012610 - MER5A DNA MER1_type -77 112 4 879 212 0 41 chr1 268181057 268181227 -14012437 + MER5A DNA MER1_type 26 188 -1 419 276 94 42 chr1 268181373 268181565 -14012099 + L2 LINE L2 1501 1702 -1612 1417 160 0 5 chr1 268181574 268181787 -14011877 + AluJb SINE Alu 87 298 -14 1004 267 27 40 chr1 268181976 268182543 -14011121 - L1ME LINE L1 -519 5651 5095 2315 96 0 6 chr1 268182543 268182855 -14010809 - AluY SINE Alu -1 310 1 1004 267 27 40 chr1 268182855 268183063 -14010601 - L1ME LINE L1 -1075 5095 4886 659 264 28 0 chr1 268183272 268183454 -14010210 - MER97a DNA MER1_type? -707 187 1 518 161 10 0 chr1 268183516 268183614 -14010050 + MER46A DNA MER2_type -1 97 -139 327 200 50 0 chr1 268183606 268183686 -14009978 + MER46A DNA MER2_type 153 236 0 * 2689 121 7 9 chr1 268184728 268185166 -14008498 - Tigger2 DNA MER2_type -2 2716 2280 314 183 33 0 chr1 268185177 268185237 -14008427 - Tigger2 DNA MER2_type -2656 62 1 1763 110 114 11 chr1 268186010 268186291 -14007373 - AluSg SINE Alu 0 310 1 25 0 0 0 chr1 268187474 268187499 -14006165 + AT_rich Low_complexity Low_complexity 1 25 0 380 256 85 0 chr1 268188640 268188722 -14004942 + L2 LINE L2 3167 3255 -17 1480 130 0 0 chr1 268189251 268189458 -14004206 - AluSq SINE Alu 0 313 107 235 200 27 53 chr1 268190251 268190326 -14003338 + HAL1 LINE L1 1298 1370 -1137 261 308 212 0 chr1 268190409 268190607 -14003057 - MIR SINE MIR -12 250 11 550 244 140 15 chr1 268190623 268190894 -14002770 + HAL1 LINE L1 1437 1741 -766 485 256 101 62 chr1 268191025 268191459 -14002205 + HAL1 LINE L1 2057 2507 0 2039 123 0 7 chr1 268191660 268191969 -14001695 - AluY SINE Alu 0 307 1 883 157 0 116 chr1 268192345 268192376 -14001288 - FAM SINE Alu -136 175 142 2149 133 3 0 chr1 268192376 268192678 -14000986 + AluSx SINE Alu 1 303 -9 883 157 0 116 chr1 268192678 268192844 -14000820 - FAM SINE Alu -169 142 1 325 333 75 0 chr1 268192944 268193064 -14000600 + L2 LINE L2 3183 3311 -2 2272 95 0 0 chr1 268194225 268194531 -13999133 + AluSx SINE Alu 1 306 0 378 225 73 60 chr1 268194828 268194979 -13998685 + MIR3 SINE MIR 18 170 -38 216 0 0 0 chr1 268195746 268195770 -13997894 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 214 331 6 0 chr1 268195946 268196106 -13997558 + (TATATG)n Simple_repeat Simple_repeat 3 163 0 * 229 328 17 17 chr1 268196037 268196153 -13997511 + A-rich Low_complexity Low_complexity 2 117 0 * 256 339 6 0 chr1 268196120 268196294 -13997370 + (TATATG)n Simple_repeat Simple_repeat 4 178 0 23 0 0 0 chr1 268196906 268196929 -13996735 + AT_rich Low_complexity Low_complexity 1 23 0 484 121 99 0 chr1 268197713 268197804 -13995860 - L1MB4 LINE L1 0 6180 6081 423 130 0 0 chr1 268199550 268199627 -13994037 + (TA)n Simple_repeat Simple_repeat 1 77 0 226 215 46 0 chr1 268200727 268200792 -13992872 - L1MA10 LINE L1 -2 6332 6265 2145 95 7 7 chr1 268200793 268201087 -13992577 + AluSx SINE Alu 1 294 -18 226 241 19 0 chr1 268201292 268201346 -13992318 - AluJb SINE Alu -73 229 175 1553 184 39 17 chr1 268201346 268201704 -13991960 - L1ME1 LINE L1 -223 5943 5578 * 2419 139 42 13 chr1 268201703 268202155 -13991509 + L1MA6 LINE L1 5306 5770 -530 2732 134 34 23 chr1 268202231 268202759 -13990905 + L1MA6 LINE L1 5767 6300 0 527 211 109 8 chr1 268202766 268202894 -13990770 - L1ME1 LINE L1 -572 5592 5452 868 149 5 112 chr1 268202895 268203110 -13990554 + MER20 DNA MER1_type 27 218 -1 399 110 55 0 chr1 268203112 268203185 -13990479 - L1ME1 LINE L1 -726 5452 5376 2154 228 73 60 chr1 268203193 268203770 -13989894 + L1M4 LINE L1 4379 4976 -1170 216 0 0 0 chr1 268203770 268203794 -13989870 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2154 228 73 60 chr1 268203794 268204201 -13989463 + L1M4 LINE L1 4976 5376 -770 2883 211 16 33 chr1 268204379 268204449 -13989215 + L1MA9 LINE L1 5538 5608 -704 753 174 0 23 chr1 268204449 268204581 -13989083 + FLAM_C SINE Alu 1 129 -4 2883 211 16 33 chr1 268204581 268204926 -13988738 + L1MA9 LINE L1 5608 5937 -375 216 0 0 0 chr1 268204926 268204950 -13988714 + (GA)n Simple_repeat Simple_repeat 2 25 0 2883 211 16 33 chr1 268204950 268205283 -13988381 + L1MA9 LINE L1 5937 6274 -38 509 366 91 6 chr1 268206209 268206540 -13987124 - L1ME LINE L1 -377 5744 5386 32 43 0 0 chr1 268206887 268206933 -13986731 + AT_rich Low_complexity Low_complexity 1 46 0 2590 24 3 0 chr1 268206954 268207250 -13986414 + AluY SINE Alu 1 297 -14 290 295 65 14 chr1 268207268 268207407 -13986257 - L1ME3A LINE L1 -37 6928 6783 428 267 33 0 chr1 268207518 268207668 -13985996 - L1ME3A LINE L1 -219 6746 6592 1037 270 48 6 chr1 268207691 268208156 -13985508 - L1ME3A LINE L1 -454 6503 6020 369 368 11 16 chr1 268208185 268208370 -13985294 - L1ME3A LINE L1 -1031 5910 5727 348 278 60 20 chr1 268208339 268208490 -13985174 - L1ME3A LINE L1 -4213 2909 2753 * 737 181 58 0 chr1 268208504 268208642 -13985022 - MER46A DNA MER2_type -90 146 1 844 253 30 60 chr1 268208981 268209799 -13983865 - L1MCc LINE L1 -4722 2400 1377 493 325 140 50 chr1 268209882 268210405 -13983259 - L1MCc LINE L1 -5485 1446 877 408 298 91 58 chr1 268210673 268210756 -13982908 - L1M4 LINE L1 -1318 4828 4749 2252 100 20 0 chr1 268210756 268211055 -13982609 - AluSq SINE Alu -8 305 1 408 298 91 58 chr1 268211055 268211454 -13982210 - L1M4 LINE L1 -1397 4749 4330 25 51 0 0 chr1 268211616 268211655 -13982009 + AT_rich Low_complexity Low_complexity 1 39 0 236 101 101 7 chr1 268211655 268211803 -13981861 + (TA)n Simple_repeat Simple_repeat 1 162 0 66 35 0 0 chr1 268211803 268211890 -13981774 + AT_rich Low_complexity Low_complexity 1 87 0 231 133 50 67 chr1 268211905 268211965 -13981699 + L1M4 LINE L1 4109 4167 -1979 31 0 0 0 chr1 268211965 268211996 -13981668 + AT_rich Low_complexity Low_complexity 1 31 0 431 314 27 38 chr1 268212503 268212688 -13980976 + MER5A DNA MER1_type 1 183 -6 197 277 133 12 chr1 268213571 268213654 -13980010 - L2 LINE L2 -8 3264 3172 2264 72 17 7 chr1 268214321 268214613 -13979051 + AluY SINE Alu 1 295 -16 4854 49 2 0 chr1 268214633 268215220 -13978444 + LTR10C LTR ERV1 4 591 0 22 0 0 0 chr1 268215602 268215624 -13978040 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 268217079 268217107 -13976557 + AT_rich Low_complexity Low_complexity 1 28 0 2049 162 31 31 chr1 268217209 268217770 -13975894 + LTR10E LTR ERV1 1 621 0 2131 121 10 0 chr1 268218789 268219086 -13974578 - AluSx SINE Alu -12 300 1 1891 169 25 22 chr1 268219160 268219522 -13974142 - MLT1A1 LTR MaLR -2 363 1 383 220 60 0 chr1 268219662 268219762 -13973902 + MIR SINE MIR 79 184 -78 278 299 9 115 chr1 268219932 268220149 -13973515 + L2 LINE L2 2565 2758 -556 340 301 17 40 chr1 268220257 268220319 -13973345 + L2 LINE L2 2919 2981 -291 207 0 0 0 chr1 268220319 268220342 -13973322 + (CATTC)n Simple_repeat Simple_repeat 4 26 0 340 301 17 40 chr1 268220342 268220452 -13973212 + L2 LINE L2 2981 3087 -185 248 241 0 0 chr1 268221896 268221954 -13971710 + MIR SINE MIR 92 149 -113 438 53 0 0 chr1 268222664 268222721 -13970943 + (CA)n Simple_repeat Simple_repeat 2 58 0 200 308 88 0 chr1 268222854 268222945 -13970719 - MIR3 SINE MIR -21 187 89 180 0 0 0 chr1 268224479 268224499 -13969165 + (CA)n Simple_repeat Simple_repeat 1 20 0 2396 166 33 143 chr1 268225617 268226123 -13967541 - MLT1E1 LTR MaLR -1 653 251 2348 87 0 0 chr1 268226123 268226409 -13967255 - AluSg SINE Alu -23 287 2 2396 166 33 143 chr1 268226409 268226636 -13967028 - MLT1E1 LTR MaLR -403 251 1 267 245 82 10 chr1 268226656 268226754 -13966910 - MIR SINE MIR -35 227 123 238 325 51 51 chr1 268226761 268226878 -13966786 + MIR SINE MIR 76 192 -70 316 296 0 74 chr1 268227043 268227151 -13966513 + MIR3 SINE MIR 83 182 -26 360 288 36 7 chr1 268228436 268228575 -13965089 + MER117 DNA MER1_type 4 146 -51 490 271 48 16 chr1 268229875 268230063 -13963601 - Charlie8 DNA MER1_type -2190 227 34 25 0 0 0 chr1 268230407 268230432 -13963232 + AT_rich Low_complexity Low_complexity 1 25 0 591 117 45 27 chr1 268230441 268230552 -13963112 + L1MB1 LINE L1 6054 6166 -2 331 181 15 45 chr1 268230585 268230718 -13962946 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 221 250 0 0 chr1 268230720 268230768 -13962896 + L2 LINE L2 3256 3303 -10 296 160 53 0 chr1 268231155 268231230 -13962434 + L1ME1 LINE L1 27 105 -6318 1328 285 72 24 chr1 268231238 268232147 -13961517 + L1ME1 LINE L1 1439 2609 -4513 3988 232 102 31 chr1 268232226 268232324 -13961340 + L1ME1 LINE L1 4387 4477 -2484 2375 90 0 3 chr1 268232324 268232625 -13961039 + AluY SINE Alu 1 300 -11 3988 232 102 31 chr1 268232625 268234467 -13959197 + L1ME1 LINE L1 4477 6460 -501 520 297 6 0 chr1 268234468 268234633 -13959031 + L1ME1 LINE L1 6783 6948 -13 552 268 66 6 chr1 268234654 268234837 -13958827 + L1ME1 LINE L1 6737 6930 -31 233 325 76 13 chr1 268234875 268235032 -13958632 + HAL1b LINE L1 439 605 -743 700 232 162 47 chr1 268235643 268236044 -13957620 - HAL1 LINE L1 -48 2459 2013 418 294 83 0 chr1 268236038 268236242 -13957422 - HAL1 LINE L1 -2270 237 17 * 223 115 39 39 chr1 268236961 268237013 -13956651 + GA-rich Low_complexity Low_complexity 5 56 0 222 118 0 0 chr1 268237036 268237070 -13956594 + (TG)n Simple_repeat Simple_repeat 2 35 0 296 219 115 0 chr1 268237101 268237197 -13956467 - MIR SINE MIR -59 203 97 285 172 0 0 chr1 268237385 268237449 -13956215 + (CA)n Simple_repeat Simple_repeat 2 65 0 819 11 0 0 chr1 268237973 268238065 -13955599 - AluSg/x SINE Alu -6 303 212 2452 65 0 13 chr1 268238329 268238638 -13955026 + AluSx SINE Alu 1 305 -7 479 70 28 0 chr1 268238642 268238713 -13954951 + L1PA7 LINE L1 6082 6154 0 728 259 141 62 chr1 268240420 268240852 -13952812 - L3 LINE CR1 -37 1540 1075 1561 178 20 68 chr1 268241603 268242002 -13951662 + MLT1B LTR MaLR 2 381 -9 22 0 0 0 chr1 268242525 268242547 -13951117 + AT_rich Low_complexity Low_complexity 1 22 0 2057 117 7 7 chr1 268243001 268243313 -13950351 + AluSx SINE Alu 1 312 0 387 280 83 38 chr1 268243337 268243469 -13950195 - L2 LINE L2 -1 3271 3134 2189 106 36 0 chr1 268244327 268244628 -13949036 + AluSx SINE Alu 1 312 0 543 261 160 16 chr1 268245150 268245338 -13948326 - MIR SINE MIR -33 229 15 2236 102 0 10 chr1 268245544 268245848 -13947816 - AluSq SINE Alu -12 301 1 342 98 0 0 chr1 268246416 268246467 -13947197 + (A)n Simple_repeat Simple_repeat 1 51 0 2140 113 0 7 chr1 268247875 268248168 -13945496 - AluSx SINE Alu -21 291 1 569 152 0 0 chr1 268248922 268249014 -13944650 - FRAM SINE Alu -14 162 71 400 316 58 49 chr1 268249057 268249282 -13944382 - MIR SINE MIR -1 261 35 1277 146 21 0 chr1 268250485 268250718 -13942946 + L1MC3 LINE L1 7227 7464 -321 1563 157 19 31 chr1 268250847 268251172 -13942492 + L1MC3 LINE L1 7465 7785 0 2445 84 0 3 chr1 268251406 268251716 -13941948 - AluSg SINE Alu -1 309 1 349 281 120 52 chr1 268251791 268251983 -13941681 - MIR SINE MIR -8 254 50 277 330 23 0 chr1 268252002 268252090 -13941574 + MER5A DNA MER1_type 1 90 -99 4598 150 15 28 chr1 268254053 268254942 -13938722 + L1MA7 LINE L1 5413 6289 -2 635 290 120 0 chr1 268254979 268255196 -13938468 - MIR SINE MIR 0 262 20 23 54 0 0 chr1 268255341 268255378 -13938286 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr1 268255799 268255822 -13937842 + (A)n Simple_repeat Simple_repeat 1 23 0 2323 89 3 10 chr1 268255836 268256139 -13937525 - AluY SINE Alu -10 301 1 5298 146 50 17 chr1 268257227 268258306 -13935358 - L1MC1 LINE L1 -6 6327 5207 2496 247 74 119 chr1 268259517 268260003 -13933661 - L2 LINE L2 -39 3274 2768 597 158 32 0 chr1 268260003 268260098 -13933566 + FLAM_A SINE Alu 1 98 -44 2496 247 74 119 chr1 268260098 268261051 -13932613 - L2 LINE L2 -545 2768 1721 2424 41 0 0 chr1 268261051 268261346 -13932318 - L1PA8 LINE L1 -17 6155 5861 2496 247 74 119 chr1 268261346 268261425 -13932239 - L2 LINE L2 -1592 1721 1640 669 285 148 17 chr1 268261450 268261741 -13931923 + L2 LINE L2 2984 3312 -1 2403 56 3 0 chr1 268262413 268262718 -13930946 + L1PA8 LINE L1 5867 6172 0 24 0 0 0 chr1 268262799 268262823 -13930841 + AT_rich Low_complexity Low_complexity 1 24 0 443 282 88 6 chr1 268262891 268263061 -13930603 - MIR SINE MIR -51 211 28 2118 124 0 0 chr1 268263876 268264159 -13929505 - AluSq SINE Alu -30 283 1 25 31 0 0 chr1 268264570 268264602 -13929062 + AT_rich Low_complexity Low_complexity 1 32 0 201 195 0 0 chr1 268265023 268265064 -13928600 + (TA)n Simple_repeat Simple_repeat 1 41 0 2827 128 104 6 chr1 268265935 268266436 -13927228 - L1MB2 LINE L1 -4 6167 5618 243 257 238 9 chr1 268268655 268268760 -13924904 - MIR SINE MIR -63 145 17 247 316 29 29 chr1 268269487 268269623 -13924041 + MIR SINE MIR 109 244 -18 1732 131 167 0 chr1 268269775 268270087 -13923577 + MER47A DNA MER2_type 1 364 -2 186 43 0 0 chr1 268270453 268270476 -13923188 + (TAA)n Simple_repeat Simple_repeat 3 25 0 405 0 0 0 chr1 268271014 268271059 -13922605 + (TG)n Simple_repeat Simple_repeat 2 46 0 612 318 68 59 chr1 268271348 268271791 -13921873 + L2 LINE L2 2824 3270 -2 915 225 12 0 chr1 268272879 268273039 -13920625 - FRAM SINE Alu -4 162 1 198 0 0 0 chr1 268273188 268273210 -13920454 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2073 122 0 3 chr1 268273210 268273491 -13920173 - AluSx SINE Alu -32 280 1 261 0 0 0 chr1 268273547 268273576 -13920088 + (TA)n Simple_repeat Simple_repeat 1 29 0 200 320 0 0 chr1 268273724 268273774 -13919890 + L2 LINE L2 3001 3050 -222 22 0 0 0 chr1 268274849 268274871 -13918793 + AT_rich Low_complexity Low_complexity 1 22 0 450 282 87 60 chr1 268275270 268275536 -13918128 + MLT1L LTR MaLR 3 275 -340 411 306 59 16 chr1 268275632 268275818 -13917846 + MLT1L LTR MaLR 422 615 0 1784 163 3 13 chr1 268275998 268276298 -13917366 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr1 268277010 268277031 -13916633 + AT_rich Low_complexity Low_complexity 1 21 0 283 327 117 6 chr1 268277143 268277305 -13916359 + MIR SINE MIR 68 247 -15 573 326 16 33 chr1 268281340 268281412 -13912252 - MIR SINE MIR 0 262 190 2304 105 3 0 chr1 268281412 268281718 -13911946 - AluSg SINE Alu -3 307 1 573 326 16 33 chr1 268281718 268281890 -13911774 - MIR SINE MIR -72 190 22 1883 157 3 13 chr1 268282017 268282329 -13911335 + AluSx SINE Alu 1 309 -3 2152 103 3 10 chr1 268283223 268283533 -13910131 + AluSg SINE Alu 1 308 -2 256 277 199 30 chr1 268284026 268284192 -13909472 + MIR SINE MIR 69 262 0 799 164 0 82 chr1 268285078 268285187 -13908477 - FLAM_C SINE Alu -177 135 39 2321 97 0 3 chr1 268285187 268285485 -13908179 + AluSg SINE Alu 2 298 -12 799 164 0 82 chr1 268285485 268285521 -13908143 - FLAM_C SINE Alu -273 39 2 641 293 153 33 chr1 268285793 268286311 -13907353 + MLT1K LTR MaLR 4 583 -5 336 263 76 25 chr1 268289280 268289398 -13904266 + MER94 DNA DNA 1 124 -10 182 353 0 0 chr1 268289753 268289821 -13903843 - L2 LINE L2 -320 2952 2885 21 0 0 0 chr1 268290400 268290421 -13903243 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1 268290507 268290537 -13903127 + AT_rich Low_complexity Low_complexity 1 30 0 1474 189 0 51 chr1 268290919 268291235 -13902429 - AluJo SINE Alu 0 301 1 528 289 148 12 chr1 268292136 268292561 -13901103 - L1ME4a LINE L1 -5 6116 5634 2934 187 25 18 chr1 268292564 268293116 -13900548 + MER89 LTR ERV1 4 559 0 431 333 78 0 chr1 268293877 268294057 -13899607 - MIR SINE MIR -56 206 13 947 195 56 5 chr1 268294100 268294295 -13899369 - MER3 DNA MER1_type -3 206 2 396 239 28 9 chr1 268294626 268294735 -13898929 - MIR3 SINE MIR -1 207 97 606 259 48 72 chr1 268294780 268294958 -13898706 + MIR SINE MIR 18 190 -72 550 271 0 8 chr1 268294958 268295091 -13898573 + MER94 DNA DNA 2 133 -1 606 259 48 72 chr1 268295091 268295163 -13898501 + MIR SINE MIR 190 262 0 2848 63 34 0 chr1 268297052 268297403 -13896261 - L1PA8 LINE L1 -6 6166 5804 1282 135 10 19 chr1 268297480 268297687 -13895977 - MER2 DNA MER2_type -135 210 6 864 198 0 19 chr1 268299881 268300038 -13893626 - FRAM SINE Alu -14 162 9 2294 116 0 0 chr1 268301042 268301345 -13892319 - AluSx SINE Alu -9 303 1 1788 157 7 33 chr1 268302546 268302846 -13890818 + AluJo SINE Alu 2 293 -19 415 257 84 92 chr1 268302958 268303302 -13890362 + MLT1I LTR MaLR 67 448 -2 772 175 0 0 chr1 268303816 268303930 -13889734 + FLAM_A SINE Alu 1 114 -19 180 0 0 0 chr1 268303936 268303956 -13889708 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 2153 114 7 13 chr1 268304626 268304933 -13888731 + AluSq SINE Alu 1 305 -8 3762 148 16 20 chr1 268304935 268305511 -13888153 - L1MB3 LINE L1 0 6183 5609 2087 125 7 0 chr1 268305511 268305799 -13887865 - AluSx SINE Alu -20 292 3 3762 148 16 20 chr1 268305799 268305862 -13887802 - L1MB3 LINE L1 -574 5609 5547 189 0 0 0 chr1 268307651 268307672 -13885992 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 31 58 0 0 chr1 268308833 268308885 -13884779 + AT_rich Low_complexity Low_complexity 1 52 0 2334 171 0 0 chr1 268309192 268309602 -13884062 - L1PB1 LINE L1 -1122 5024 4615 7147 72 1 4 chr1 268309606 268310744 -13882920 + L1PB1 LINE L1 5017 6151 0 39 0 0 0 chr1 268310767 268310806 -13882858 + AT_rich Low_complexity Low_complexity 1 39 0 2151 110 7 3 chr1 268311220 268311512 -13882152 - AluSg SINE Alu -17 293 1 245 264 0 46 chr1 268311623 268311710 -13881954 - MER20B DNA MER1_type -700 83 1 970 196 59 59 chr1 268311824 268312043 -13881621 - MER20 DNA MER1_type 0 219 1 2157 100 4 0 chr1 268312813 268313092 -13880572 - AluSx SINE Alu -32 280 1 3573 165 5 24 chr1 268313180 268313339 -13880325 + L1MB3 LINE L1 5572 5733 -450 2224 95 7 3 chr1 268313339 268313635 -13880029 + AluSc SINE Alu 1 297 -12 3573 165 5 24 chr1 268313635 268314092 -13879572 + L1MB3 LINE L1 5733 6176 -7 346 361 113 11 chr1 268314410 268314684 -13878980 - L2 LINE L2 -38 3234 2933 694 266 79 40 chr1 268316534 268316845 -13876819 - L1MC5 LINE L1 -1017 6791 6562 1719 138 12 98 chr1 268316845 268317009 -13876655 - AluJb SINE Alu -13 299 175 318 26 0 0 chr1 268317009 268317048 -13876616 + (TG)n Simple_repeat Simple_repeat 2 40 0 1719 138 12 98 chr1 268317048 268317210 -13876454 - AluJb SINE Alu -137 175 1 694 266 79 40 chr1 268317210 268317365 -13876299 - L1MC5 LINE L1 -1246 6562 6414 697 264 161 14 chr1 268317526 268317879 -13875785 - L1MC4a LINE L1 -1732 6076 5672 2282 110 7 0 chr1 268317924 268318223 -13875441 - AluSx SINE Alu -11 301 1 320 349 55 0 chr1 268318267 268318376 -13875288 + L2 LINE L2 3157 3271 -1 282 278 152 0 chr1 268318424 268318575 -13875089 + MIR SINE MIR 79 252 -10 189 74 0 0 chr1 268318588 268318615 -13875049 + (CAT)n Simple_repeat Simple_repeat 2 28 0 1170 288 238 19 chr1 268319585 268320407 -13873257 + L2 LINE L2 1712 2713 -601 3046 241 70 51 chr1 268320407 268321647 -13872017 + L1MC4a LINE L1 6104 7367 -441 524 265 74 77 chr1 268321630 268321966 -13871698 + L1MC4 LINE L1 7564 7898 -144 * 582 338 40 49 chr1 268321969 268322297 -13871367 + L2 LINE L2 2909 3233 -39 496 284 46 42 chr1 268322306 268322545 -13871119 + MLT1I LTR MaLR 1 240 -169 279 228 15 125 chr1 268322654 268322696 -13870968 + MLT1I LTR MaLR 289 334 -75 1806 170 13 7 chr1 268322696 268323002 -13870662 + AluJo SINE Alu 1 308 -4 279 228 15 125 chr1 268323002 268323019 -13870645 + MLT1I LTR MaLR 334 351 -58 2177 96 0 4 chr1 268323019 268323327 -13870337 + AluSg SINE Alu 1 307 0 279 228 15 125 chr1 268323327 268323401 -13870263 + MLT1I LTR MaLR 351 409 0 275 302 121 0 chr1 268323438 268323554 -13870110 + L1MC/D LINE L1 5736 5865 -1943 2646 131 6 0 chr1 268324960 268325320 -13868344 + THE1B LTR MaLR 1 362 -2 511 308 59 21 chr1 268325355 268325591 -13868073 + MIR SINE MIR 10 262 0 180 0 0 0 chr1 268326430 268326450 -13867214 + (T)n Simple_repeat Simple_repeat 1 20 0 214 308 15 0 chr1 268328250 268328315 -13865349 - MIR SINE MIR 0 262 197 292 341 36 14 chr1 268328720 268328858 -13864806 + MIR SINE MIR 2 142 -120 432 246 13 20 chr1 268328862 268328951 -13864713 - MIR SINE MIR -62 146 58 2492 71 7 0 chr1 268328951 268329261 -13864403 + AluSp SINE Alu 1 312 -1 432 246 13 20 chr1 268329261 268329298 -13864366 - MIR SINE MIR -150 58 22 29 0 0 0 chr1 268329733 268329762 -13863902 + AT_rich Low_complexity Low_complexity 1 29 0 2129 143 0 6 chr1 268329818 268330132 -13863532 - AluSx SINE Alu 0 312 1 668 244 152 14 chr1 268331305 268331522 -13862142 - MIR SINE MIR -15 247 1 310 312 132 44 chr1 268331611 268331816 -13861848 - MIR SINE MIR -6 256 34 635 288 19 10 chr1 268331840 268332045 -13861619 - MIR SINE MIR -54 208 2 225 108 0 0 chr1 268333202 268333239 -13860425 + (CCG)n Simple_repeat Simple_repeat 2 38 0 668 164 19 19 chr1 268333478 268333637 -13860027 + CT-rich Low_complexity Low_complexity 2 160 0 319 366 32 0 chr1 268334877 268335000 -13858664 - L2 LINE L2 -8 3264 3138 2180 87 25 0 chr1 268336230 268336534 -13857130 + AluSx SINE Alu 1 311 0 474 316 101 60 chr1 268336577 268337011 -13856653 + L2 LINE L2 2198 2649 -665 679 270 115 68 chr1 268337076 268337476 -13856188 - LTR33A LTR ERVL -80 443 25 496 236 85 6 chr1 268337747 268337912 -13855752 - L1MEc LINE L1 -1538 4677 4500 304 313 47 40 chr1 268338834 268338984 -13854680 + HAL1 LINE L1 925 1075 -1432 1072 202 35 16 chr1 268339006 268339264 -13854400 + L1M4 LINE L1 3588 3850 -2296 423 287 84 45 chr1 268339321 268339419 -13854245 + HAL1 LINE L1 1669 1762 -745 1935 128 30 20 chr1 268339419 268339716 -13853948 - AluSx SINE Alu -12 300 1 423 287 84 45 chr1 268339716 268339819 -13853845 + HAL1 LINE L1 1762 1878 -629 1060 257 115 41 chr1 268339834 268340705 -13852959 - L1MEc LINE L1 -2658 3557 2623 311 214 79 48 chr1 268340733 268340859 -13852805 + L1M4 LINE L1 2693 2822 -3324 1651 173 0 4 chr1 268340878 268341144 -13852520 + AluJb SINE Alu 24 288 -24 873 229 40 54 chr1 268341209 268341269 -13852395 - L1MEc LINE L1 -3704 2511 2452 778 63 0 0 chr1 268341269 268341364 -13852300 - L1PA5 LINE L1 -4 6150 6056 873 229 40 54 chr1 268341364 268341704 -13851960 - L1MEc LINE L1 -3763 2452 2167 1597 235 66 48 chr1 268342802 268343060 -13850604 + L1MC4a LINE L1 1945 2197 -4185 1656 189 3 31 chr1 268343060 268343378 -13850286 - AluJb SINE Alu -3 309 1 1597 235 66 48 chr1 268343378 268344020 -13849644 + L1MC4a LINE L1 2197 2856 -3526 619 240 58 0 chr1 268344040 268344194 -13849470 - LTR52 LTR ERVL -23 398 236 378 129 0 29 chr1 268344217 268344287 -13849377 + L1MB8 LINE L1 6111 6178 0 298 315 60 20 chr1 268344430 268344579 -13849085 + L1ME3 LINE L1 6000 6154 -8 251 302 26 79 chr1 268344600 268344789 -13848875 + HAL1b LINE L1 308 486 -862 2608 145 52 0 chr1 268344813 268345221 -13848443 + MSTB1 LTR MaLR 4 432 0 639 321 57 0 chr1 268345268 268345480 -13848184 - MIR SINE MIR -17 245 22 383 264 166 39 chr1 268345510 268345798 -13847866 + HAL1b LINE L1 510 841 -507 2316 115 0 6 chr1 268345798 268346112 -13847552 + AluSx SINE Alu 1 312 0 383 264 166 39 chr1 268346112 268346130 -13847534 + HAL1b LINE L1 841 855 -493 29 28 0 0 chr1 268346737 268346773 -13846891 + AT_rich Low_complexity Low_complexity 1 36 0 1989 129 10 7 chr1 268346883 268347200 -13846464 + AluSx SINE Alu 1 312 0 2071 144 0 6 chr1 268347219 268347532 -13846132 + AluSx SINE Alu 1 311 -1 305 323 52 71 chr1 268347679 268348044 -13845620 + L1MC4a LINE L1 2914 3271 -3111 438 272 134 32 chr1 268348094 268348276 -13845388 + MLT1J2 LTR MaLR 65 227 -223 2131 161 135 13 chr1 268348276 268348661 -13845003 - MSTB1 LTR MaLR 0 432 1 438 272 134 32 chr1 268348661 268348822 -13844842 + MLT1J2 LTR MaLR 227 438 -12 374 218 58 23 chr1 268349227 268349314 -13844350 + MLT1I LTR MaLR 320 409 0 472 294 83 83 chr1 268349349 268349461 -13844203 + L1MC4a LINE L1 3307 3418 -2964 2065 99 3 27 chr1 268349461 268349755 -13843909 + AluSq SINE Alu 1 287 -26 472 294 83 83 chr1 268349755 268350413 -13843251 + L1MC4a LINE L1 3417 4077 -2305 457 230 95 0 chr1 268350663 268350789 -13842875 + L1ME3A LINE L1 5817 5954 -216 369 255 71 0 chr1 268350802 268350900 -13842764 + L1ME3A LINE L1 5998 6102 -68 230 233 12 0 chr1 268351169 268351255 -13842409 + GA-rich Low_complexity Low_complexity 2 88 0 477 213 106 11 chr1 268351307 268351495 -13842169 + L1MC4a LINE L1 5500 5705 -2339 838 320 23 0 chr1 268351522 268351825 -13841839 + L1MC4a LINE L1 5769 6078 -1966 21 71 0 0 chr1 268352030 268352072 -13841592 + AT_rich Low_complexity Low_complexity 1 42 0 650 255 35 79 chr1 268354293 268354611 -13839053 + L2 LINE L2 2969 3272 -41 2223 115 0 7 chr1 268354755 268355082 -13838582 + AluSx SINE Alu 1 312 0 410 276 158 18 chr1 268355353 268355581 -13838083 - MIR SINE MIR 0 262 3 2137 127 9 19 chr1 268356177 268356493 -13837171 - AluSq SINE Alu 0 313 1 1717 195 22 37 chr1 268357321 268357777 -13835887 - Charlie1a DNA MER1_type -3 1452 1004 1275 198 59 97 chr1 268357777 268357974 -13835690 - L1MD2 LINE L1 -41 6318 6140 198 0 0 0 chr1 268357974 268357996 -13835668 + (TG)n Simple_repeat Simple_repeat 2 23 0 1275 198 59 97 chr1 268357996 268358171 -13835493 - L1MD2 LINE L1 -219 6140 5960 2128 175 102 17 chr1 268358171 268358634 -13835030 - Charlie1a DNA MER1_type -410 1045 544 1212 52 13 0 chr1 268358634 268358788 -13834876 - AluY SINE Alu -2 309 154 2394 194 70 25 chr1 268358788 268358916 -13834748 - Charlie1a DNA MER1_type -2211 550 429 2268 115 0 0 chr1 268358916 268359221 -13834443 - AluSx SINE Alu -7 305 1 2394 194 70 25 chr1 268359221 268359618 -13834046 - Charlie1a DNA MER1_type -2332 429 1 1103 209 41 22 chr1 268360687 268360955 -13832709 + MER46C DNA MER2_type 18 290 -48 502 189 0 0 chr1 268360937 268361027 -13832637 + MER2 DNA MER2_type 43 132 -213 * 14768 121 43 18 chr1 268361033 268362222 -13831442 + Tigger1 DNA MER2_type 23 1181 -1237 2221 97 41 0 chr1 268362222 268362512 -13831152 - AluSx SINE Alu -10 302 1 14768 121 43 18 chr1 268362512 268363000 -13830664 + Tigger1 DNA MER2_type 1181 1655 -763 1801 56 4 72 chr1 268363000 268363251 -13830413 + AluY SINE Alu 1 234 -77 14768 121 43 18 chr1 268363251 268363908 -13829756 + Tigger1 DNA MER2_type 1655 2416 -2 497 67 40 0 chr1 268363909 268363984 -13829680 + MER2 DNA MER2_type 129 206 -139 225 204 0 41 chr1 268364026 268364075 -13829589 + MER2 DNA MER2_type 280 326 -19 730 166 0 22 chr1 268364083 268364227 -13829437 - MIR SINE MIR -63 145 60 485 289 103 88 chr1 268364937 268365508 -13828156 - L1M2 LINE L1 -5593 1256 677 21 0 0 0 chr1 268365584 268365605 -13828059 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1 268365950 268365991 -13827673 + GC_rich Low_complexity Low_complexity 1 41 0 39 22 0 0 chr1 268366299 268366345 -13827319 + GC_rich Low_complexity Low_complexity 1 46 0 2375 81 0 0 chr1 268366995 268367290 -13826374 + AluSx SINE Alu 1 295 -17 22 35 0 0 chr1 268368054 268368083 -13825581 + AT_rich Low_complexity Low_complexity 1 29 0 31 58 0 0 chr1 268368555 268368607 -13825057 + AT_rich Low_complexity Low_complexity 1 52 0 391 286 93 64 chr1 268369729 268370040 -13823624 - L2 LINE L2 -4 3309 2990 782 156 30 30 chr1 268371087 268371222 -13822442 + AluJo SINE Alu 2 136 -176 2476 55 3 10 chr1 268371479 268371786 -13821878 - AluY SINE Alu -4 307 3 776 164 8 22 chr1 268371793 268371927 -13821737 - FLAM_C SINE Alu 0 133 2 381 319 0 9 chr1 268371934 268372047 -13821617 + MIR SINE MIR 23 134 -128 545 16 0 0 chr1 268372587 268372651 -13821013 - L1PA6 LINE L1 -1 6153 6090 525 330 68 18 chr1 268373047 268373268 -13820396 - MIR SINE MIR -10 252 21 787 205 81 15 chr1 268373314 268373587 -13820077 - Charlie1 DNA MER1_type -53 2708 2418 265 217 0 0 chr1 268373592 268373638 -13820026 - Charlie1 DNA MER1_type -2714 47 2 252 328 82 25 chr1 268373682 268373804 -13819860 - MER5A DNA MER1_type 0 189 61 2105 136 7 0 chr1 268373882 268374201 -13819463 + AluSx SINE Alu 1 321 0 1149 204 9 5 chr1 268374732 268374952 -13818712 - MER58A DNA MER1_type -2 222 2 875 311 92 13 chr1 268375915 268376476 -13817188 - L2 LINE L2 -1 3312 2679 1000 234 117 23 chr1 268376476 268376775 -13816889 - L2 LINE L2 -1037 2277 1951 1350 67 0 0 chr1 268376819 268376997 -13816667 + (TTC)n Simple_repeat Simple_repeat 3 180 0 672 102 0 0 chr1 268376997 268377095 -13816569 + (TCC)n Simple_repeat Simple_repeat 1 98 0 1667 205 0 10 chr1 268377095 268377407 -13816257 - AluJb SINE Alu -3 309 1 236 363 115 9 chr1 268377571 268377684 -13815980 - L2 LINE L2 -2 3270 3146 217 174 0 43 chr1 268380401 268380447 -13813217 + CT-rich Low_complexity Low_complexity 1 44 0 199 337 81 0 chr1 268380486 268380572 -13813092 + MIR SINE MIR 63 155 -107 521 242 47 0 chr1 268380930 268381058 -13812606 - MIR SINE MIR -15 247 114 789 248 119 0 chr1 268381259 268381485 -13812179 + MIR SINE MIR 10 262 0 7140 51 0 0 chr1 268381731 268383387 -13810277 + L1PA6 LINE L1 4518 6173 0 1414 160 0 72 chr1 268384555 268384818 -13808846 - AluJb SINE Alu -68 244 1 2418 143 10 0 chr1 268385131 268385523 -13808141 + L1PA16 LINE L1 5767 6162 -4 2628 229 20 21 chr1 268385594 268386339 -13807325 - L1MB8 LINE L1 -1 6177 5434 343 246 66 49 chr1 268386378 268386500 -13807164 - MIR SINE MIR -61 147 24 229 313 60 12 chr1 268386728 268386811 -13806853 + MER5A DNA MER1_type 61 147 -42 2403 91 0 0 chr1 268387280 268387577 -13806087 + AluSc SINE Alu 1 297 -12 881 170 152 22 chr1 268387699 268387923 -13805741 + MER2 DNA MER2_type 68 320 -25 381 305 0 19 chr1 268388293 268388427 -13805237 - MIR SINE MIR -62 146 30 2029 93 0 22 chr1 268389058 268389336 -13804328 + AluSg SINE Alu 25 296 -14 1643 207 7 0 chr1 268389506 268389810 -13803854 - AluJb SINE Alu -6 306 1 1569 102 45 15 chr1 268389813 268390057 -13803607 - L1MA5A LINE L1 0 6297 6043 2019 135 20 0 chr1 268390057 268390353 -13803311 - AluSx SINE Alu -9 303 2 1569 102 45 15 chr1 268390353 268390373 -13803291 - L1MA5A LINE L1 -254 6043 6025 185 323 49 61 chr1 268393839 268394003 -13799661 + L2 LINE L2 3132 3293 -20 183 250 71 0 chr1 268393961 268394017 -13799647 - L2 LINE L2 -1379 1935 1876 * 203 154 0 19 chr1 268394062 268394114 -13799550 + (TTA)n Simple_repeat Simple_repeat 2 52 0 343 313 39 22 chr1 268394190 268394369 -13799295 + L1MC/D LINE L1 5616 5797 -2011 1394 117 22 4 chr1 268394381 268394612 -13799052 - MER6 DNA MER2_type 0 865 631 658 101 0 0 chr1 268394614 268394703 -13798961 + AluS SINE Alu 3 91 -222 2276 69 0 0 chr1 268394747 268395063 -13798601 + L1PA5 LINE L1 5862 6177 0 897 195 0 13 chr1 268396270 268396429 -13797235 + AluJb SINE Alu 137 293 -19 2161 95 0 11 chr1 268396451 268396736 -13796928 - AluSx SINE Alu -30 282 1 2211 114 0 13 chr1 268401041 268401348 -13792316 + AluSq SINE Alu 3 305 -8 2069 138 3 25 chr1 268401348 268401666 -13791998 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr1 268402671 268402692 -13790972 + AT_rich Low_complexity Low_complexity 1 21 0 1691 159 9 3 chr1 268402807 268403290 -13790374 + L1MA5 LINE L1 5050 5535 -744 4241 162 3 9 chr1 268403359 268404117 -13789547 + L1MA5 LINE L1 5542 6294 -6 2263 113 3 0 chr1 268405201 268405502 -13788162 + AluSq SINE Alu 1 302 -11 1951 158 0 10 chr1 268405994 268406292 -13787372 + AluJb SINE Alu 1 295 -17 191 214 258 45 chr1 268406444 268406533 -13787131 - L2 LINE L2 -10 3262 3155 479 297 96 76 chr1 268406540 268406790 -13786874 - L2 LINE L2 -4 3268 3024 1497 107 4 64 chr1 268406790 268407024 -13786640 + AluSg/x SINE Alu 74 293 -19 479 297 96 76 chr1 268407024 268407156 -13786508 - L2 LINE L2 -248 3024 2896 1064 219 88 22 chr1 268407156 268407475 -13786189 + MER58B DNA MER1_type 1 340 -1 479 297 96 76 chr1 268407475 268407779 -13785885 - L2 LINE L2 -376 2896 2554 504 345 26 26 chr1 268407791 268408017 -13785647 - MIR SINE MIR -10 252 27 696 219 70 27 chr1 268408219 268408475 -13785189 - LTR37B LTR ERV1 -2 466 200 205 279 47 35 chr1 268408859 268408945 -13784719 - MIR SINE MIR -64 144 58 2063 133 4 0 chr1 268408975 268409281 -13784383 - AluSx SINE Alu 0 309 3 375 23 0 0 chr1 268409373 268409417 -13784247 + (TG)n Simple_repeat Simple_repeat 1 44 0 230 288 176 24 chr1 268411310 268411435 -13782229 - MIR SINE MIR -70 192 49 229 330 0 11 chr1 268411773 268411809 -13781855 + (CATATA)n Simple_repeat Simple_repeat 3 38 -51 2267 83 17 0 chr1 268411809 268412097 -13781567 - AluSg SINE Alu -17 293 1 229 330 0 11 chr1 268412097 268412148 -13781516 + (CATATA)n Simple_repeat Simple_repeat 38 89 0 32 57 0 0 chr1 268412358 268412411 -13781253 + AT_rich Low_complexity Low_complexity 1 53 0 2134 102 0 7 chr1 268412572 268412865 -13780799 - AluSg SINE Alu -19 291 1 1014 169 6 23 chr1 268414552 268414755 -13778909 + AluSg/x SINE Alu 114 310 0 3467 129 29 2 chr1 268415231 268415744 -13777920 - MER1A DNA MER1_type 0 527 1 767 198 132 6 chr1 268415944 268416111 -13777553 - MER5A DNA MER1_type -1 188 1 21 36 0 0 chr1 268416448 268416476 -13777188 + AT_rich Low_complexity Low_complexity 1 28 0 273 325 147 25 chr1 268417551 268417714 -13775950 - MIR3 SINE MIR -10 198 16 1882 154 18 38 chr1 268417763 268418158 -13775506 - MLT1B LTR MaLR -3 387 1 254 292 34 67 chr1 268418419 268418508 -13775156 - MIR SINE MIR -109 99 14 548 227 127 13 chr1 268418775 268418925 -13774739 + MIR SINE MIR 2 168 -94 604 162 17 51 chr1 268419678 268419795 -13773869 + FAM SINE Alu 1 113 -72 284 207 0 11 chr1 268420695 268420782 -13772882 + T-rich Low_complexity Low_complexity 4 89 0 183 267 0 0 chr1 268422277 268422352 -13771312 + (TG)n Simple_repeat Simple_repeat 2 76 0 2263 115 0 3 chr1 268423364 268423669 -13769995 + AluSc SINE Alu 1 304 -5 2031 202 24 15 chr1 268423917 268424372 -13769292 - MER65C LTR ERV1 -2 459 1 1582 191 67 9 chr1 268424507 268424852 -13768812 + MLT1A1 LTR MaLR 1 365 0 1219 88 0 0 chr1 268425036 268425195 -13768469 + AluY SINE Alu 143 301 -10 3205 163 41 5 chr1 268425244 268425827 -13767837 + MER6A DNA MER2_type 2 605 0 755 244 11 22 chr1 268425978 268426158 -13767506 + MER45A DNA AcHobo 1 178 0 1740 249 69 7 chr1 268426338 268427019 -13766645 - L1M4 LINE L1 -4835 2020 1346 3513 188 61 57 chr1 268427019 268427827 -13765837 + MER21B LTR ERV1 1 811 -52 366 188 0 0 chr1 268427873 268427942 -13765722 + Tigger2 DNA MER2_type 1 69 -2649 * 2675 142 9 5 chr1 268427932 268428376 -13765288 + Tigger2 DNA MER2_type 2273 2718 0 4144 202 119 67 chr1 268428376 268429642 -13764022 - L1M4 LINE L1 -5508 1351 20 431 247 101 46 chr1 268429747 268429966 -13763698 + L2 LINE L2 2196 2426 -888 292 214 0 0 chr1 268430074 268430130 -13763534 - MIR SINE MIR -112 150 95 635 150 17 0 chr1 268430173 268430293 -13763371 + CT-rich Low_complexity Low_complexity 6 127 0 1518 113 8 42 chr1 268430293 268430624 -13763040 + AluSg/x SINE Alu 71 393 0 655 160 0 0 chr1 268430625 268430744 -13762920 - MLT2D LTR ERVL -66 348 230 * 1100 177 68 55 chr1 268430736 268431038 -13762626 - MLT1B LTR MaLR -80 387 3 226 185 0 56 chr1 268432143 268432197 -13761467 + L1MC/D LINE L1 5439 5489 -844 5133 84 0 25 chr1 268433189 268433895 -13759769 - LTR12 LTR ERV1 0 688 1 463 230 49 3 chr1 268433987 268434301 -13759363 + (CA)n Simple_repeat Simple_repeat 1 328 0 2291 110 3 0 chr1 268434679 268434987 -13758677 - AluSc SINE Alu 0 309 1 21 0 0 0 chr1 268435312 268435333 -13758331 + AT_rich Low_complexity Low_complexity 1 21 0 2409 70 0 3 chr1 268435361 268435661 -13758003 - AluY SINE Alu -10 301 3 302 255 132 43 chr1 268435819 268436054 -13757610 - L1ME4a LINE L1 -94 6027 5772 618 311 47 21 chr1 268436117 268436352 -13757312 + MIR SINE MIR 22 262 0 773 281 40 26 chr1 268437995 268438419 -13755245 + L1MEc LINE L1 586 1015 -5381 2152 109 0 20 chr1 268438428 268438730 -13754934 + AluSp SINE Alu 1 296 -17 4448 177 20 22 chr1 268438734 268438938 -13754726 + L1MB3 LINE L1 5174 5377 -806 1562 167 68 14 chr1 268438938 268439231 -13754433 + AluJb SINE Alu 1 309 -3 4448 177 20 22 chr1 268439231 268440034 -13753630 + L1MB3 LINE L1 5377 6183 0 345 285 0 8 chr1 268440042 268440172 -13753492 + L1MEc LINE L1 1023 1151 -5245 911 247 66 80 chr1 268440268 268440985 -13752679 + L1MEc LINE L1 1615 2321 -4075 245 212 6 164 chr1 268441032 268441090 -13752574 + L1MEc LINE L1 2386 2451 -3764 2059 107 0 48 chr1 268441090 268441400 -13752264 + AluSq SINE Alu 1 295 -18 245 212 6 164 chr1 268441400 268441506 -13752158 + L1MEc LINE L1 2451 2524 -3691 2338 135 44 2 chr1 268441518 268441925 -13751739 + MSTB1 LTR MaLR 9 432 0 2876 235 107 35 chr1 268441931 268443235 -13750429 + L1MEc LINE L1 2532 3930 -2285 2428 208 62 38 chr1 268493270 268493822 -13699842 + MER21B LTR ERV1 298 862 -1 1140 119 0 0 chr1 268494863 268495042 -13698622 + AluSg/x SINE Alu 131 309 0 396 294 89 73 chr1 268495240 268495556 -13698108 - MLT1J LTR MaLR -91 420 100 1563 164 19 42 chr1 268496557 268496867 -13696797 - AluJo SINE Alu -9 303 1 622 305 139 6 chr1 268496934 268497500 -13696164 + MER115 DNA AcHobo 1 673 -20 2237 112 3 13 chr1 268497611 268497925 -13695739 - AluSq SINE Alu -2 311 1 281 286 91 39 chr1 268499114 268499268 -13694396 + L2 LINE L2 3031 3192 -121 1744 152 49 26 chr1 268499345 268499693 -13693971 - L1MB8 LINE L1 -5 6173 5818 1529 191 77 31 chr1 268499694 268500019 -13693645 + MER2 DNA MER2_type 6 345 0 2638 180 74 0 chr1 268500025 268500598 -13693066 - L1MB8 LINE L1 -384 5800 5188 * 6268 127 37 1 chr1 268500594 268501781 -13691883 - L1PA11 LINE L1 0 6174 4942 251 270 48 0 chr1 268501787 268501850 -13691814 + L2 LINE L2 3246 3311 -2 766 194 47 33 chr1 268501869 268502132 -13691532 - L1M LINE L1 -743 5403 5156 1726 264 43 63 chr1 268503098 268503332 -13690332 - L1M4 LINE L1 -2368 3778 3541 2287 92 7 0 chr1 268503332 268503627 -13690037 - AluSg SINE Alu -13 297 1 1726 264 43 63 chr1 268503627 268504260 -13689404 - L1M4 LINE L1 -2605 3541 2929 180 77 0 0 chr1 268504469 268504495 -13689169 + (TG)n Simple_repeat Simple_repeat 2 27 0 646 337 56 4 chr1 268504575 268504845 -13688819 + LTR33 LTR ERVL 1 284 -237 273 260 20 20 chr1 268504937 268505029 -13688635 + LTR33 LTR ERVL 401 495 -26 213 65 0 0 chr1 268505029 268505060 -13688604 + (TA)n Simple_repeat Simple_repeat 2 32 0 1443 202 79 48 chr1 268505377 268505993 -13687671 - L1ME LINE L1 -437 5727 5107 326 85 21 0 chr1 268506040 268506087 -13687577 - MLT2D LTR ERVL 0 414 367 224 225 0 0 chr1 268506087 268506127 -13687537 + (TG)n Simple_repeat Simple_repeat 2 41 0 266 224 0 0 chr1 268506128 268506204 -13687460 - L1ME LINE L1 -1704 4442 4367 231 88 0 0 chr1 268506224 268506258 -13687406 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 669 167 35 0 chr1 268506330 268506504 -13687160 + (TA)n Simple_repeat Simple_repeat 1 180 0 604 156 22 28 chr1 268506520 268506700 -13686964 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 * 669 166 29 6 chr1 268506685 268506860 -13686804 + (TA)n Simple_repeat Simple_repeat 2 180 0 1996 132 57 47 chr1 268506865 268507243 -13686421 - MLT2D LTR ERVL -40 480 1 437 276 17 0 chr1 268507245 268507361 -13686303 - L1M4 LINE L1 -1074 5072 4955 811 103 226 7 chr1 268507362 268507508 -13686156 - AluSq SINE Alu -14 299 122 2465 59 16 3 chr1 268507623 268507930 -13685734 - L1PA5 LINE L1 -3 6151 5841 2298 103 7 0 chr1 268508871 268509172 -13684492 - AluSx SINE Alu -9 303 1 25 0 0 0 chr1 268509373 268509398 -13684266 + AT_rich Low_complexity Low_complexity 1 25 0 2449 38 0 17 chr1 268510387 268510701 -13682963 + AluY SINE Alu 1 309 0 1960 187 30 25 chr1 268511014 268511377 -13682287 - MLT1A1 LTR MaLR 0 365 1 2223 112 0 19 chr1 268511601 268511915 -13681749 - AluSx SINE Alu -4 308 1 202 262 0 0 chr1 268512053 268512095 -13681569 + CT-rich Low_complexity Low_complexity 4 45 0 252 284 27 14 chr1 268512212 268512286 -13681378 - MLT1K LTR MaLR -237 351 277 6313 192 73 18 chr1 268513038 268514524 -13679140 + MER52A LTR ERV1 46 1754 -1 191 298 142 14 chr1 268515704 268515845 -13677819 + L2 LINE L2 2228 2386 -928 1339 177 126 103 chr1 268515904 268516505 -13677159 + LTR50 LTR ERVL 94 795 0 1201 299 34 16 chr1 268516506 268516790 -13676874 + L2 LINE L2 2398 2694 -620 2203 104 0 32 chr1 268516790 268517098 -13676566 - AluY SINE Alu -13 298 1 1201 299 34 16 chr1 268517098 268517255 -13676409 + L2 LINE L2 2694 2847 -467 2197 184 47 113 chr1 268518031 268518624 -13675040 + MLT2B3 LTR ERVL 1 554 0 1167 274 27 32 chr1 268518880 268519207 -13674457 - L1ME LINE L1 -5644 426 100 2341 106 0 0 chr1 268519207 268519509 -13674155 - AluSg SINE Alu -8 302 1 1167 274 27 32 chr1 268519509 268519553 -13674111 - L1ME LINE L1 -5970 100 57 610 286 28 0 chr1 268519585 268519767 -13673897 + MIR SINE MIR 34 220 -42 21 36 0 0 chr1 268519994 268520022 -13673642 + AT_rich Low_complexity Low_complexity 1 28 0 552 274 70 39 chr1 268520451 268520736 -13672928 - MLT1J LTR MaLR 0 511 218 1444 261 70 55 chr1 268520980 268521563 -13672101 + Charlie2 DNA MER1_type 35 626 -2156 482 263 12 12 chr1 268521669 268521829 -13671835 + Charlie2a DNA MER1_type 1466 1625 -1237 1506 266 69 13 chr1 268521829 268522377 -13671287 + L1ME3A LINE L1 3626 4204 -1942 488 261 14 7 chr1 268522389 268522531 -13671133 + L1ME3A LINE L1 4734 4876 -1270 4898 141 26 5 chr1 268522540 268523320 -13670344 + L1PB4 LINE L1 5361 6156 0 1359 261 48 85 chr1 268523321 268524140 -13669524 + L1ME3A LINE L1 4890 5642 -528 1729 182 10 7 chr1 268524140 268524447 -13669217 + AluJo SINE Alu 1 308 -4 1359 261 48 85 chr1 268524447 268524949 -13668715 + L1ME3A LINE L1 5642 6161 -9 318 333 49 31 chr1 268525011 268525173 -13668491 - MIR SINE MIR -30 232 68 1064 264 133 59 chr1 268527102 268527696 -13665968 + MER115 DNA AcHobo 24 4002 -29 1895 228 168 6 chr1 268527719 268528254 -13665410 + LTR26E LTR ERV1 1 622 0 330 283 60 65 chr1 268528344 268528436 -13665228 - L2 LINE L2 -612 2702 2611 2781 115 61 31 chr1 268528436 268528914 -13664750 - LTR22B LTR ERVK 0 492 1 330 283 60 65 chr1 268528914 268529005 -13664659 - L2 LINE L2 -703 2611 2520 788 206 41 6 chr1 268529194 268529364 -13664300 - MLT1D LTR MaLR -28 477 302 1567 193 3 14 chr1 268529372 268529694 -13663970 - AluJo SINE Alu 0 319 1 680 169 23 8 chr1 268529697 268529827 -13663837 - AluJb SINE Alu -180 132 1 579 223 76 83 chr1 268529830 268530131 -13663533 - MLT1D LTR MaLR -206 299 1 894 241 33 5 chr1 268532047 268532259 -13661405 - MER20 DNA MER1_type 0 219 2 3968 133 5 22 chr1 268532323 268532849 -13660815 - LTR9 LTR ERV1 0 612 97 2149 110 0 3 chr1 268532849 268533141 -13660523 + AluSg1 SINE Alu 1 291 -18 3968 133 5 22 chr1 268533141 268533237 -13660427 - LTR9 LTR ERV1 -515 97 1 515 284 87 21 chr1 268534713 268535241 -13658423 + L1ME2 LINE L1 828 1390 -4982 1493 209 50 9 chr1 268535256 268535596 -13658068 + MLT1A1 LTR MaLR 12 365 0 684 268 98 24 chr1 268535598 268536203 -13657461 + L1ME2 LINE L1 1283 2091 -4472 1799 244 66 43 chr1 268536210 268537544 -13656120 + L1ME2 LINE L1 4757 6135 -265 679 204 112 108 chr1 268537545 268537752 -13655912 - MER4C LTR ERV1 0 685 387 2206 163 65 0 chr1 268537752 268538152 -13655512 - MSTB LTR MaLR 0 426 1 679 204 112 108 chr1 268538152 268538260 -13655404 - MER4C LTR ERV1 -298 387 281 512 171 16 187 chr1 268538270 268538527 -13655137 - MER4A LTR ERV1 -315 349 137 483 146 36 18 chr1 268538612 268538722 -13654942 - MER4C LTR ERV1 -349 116 5 351 186 0 0 chr1 268538726 268538796 -13654868 + L1ME2 LINE L1 6134 6203 -197 * 1765 127 7 7 chr1 268538789 268539096 -13654568 + L1MA3 LINE L1 5892 6198 -107 301 231 172 35 chr1 268539109 268539239 -13654425 + L1ME2 LINE L1 6199 6359 -41 2146 116 3 0 chr1 268539239 268539531 -13654133 - AluSq SINE Alu -20 293 1 301 231 172 35 chr1 268539531 268539569 -13654095 + L1ME2 LINE L1 6359 6390 -10 3356 138 35 8 chr1 268540341 268540942 -13652722 + LTR29 LTR ERV1 3 619 -3 486 277 34 14 chr1 268541489 268541637 -13652027 + MIR SINE MIR 29 179 -83 180 207 0 0 chr1 268541634 268541663 -13652001 + L2 LINE L2 3227 3255 -17 * 2098 135 0 0 chr1 268542447 268542744 -13650920 - AluSx SINE Alu -15 297 1 1638 129 4 4 chr1 268543716 268543957 -13649707 + AluSg1 SINE Alu 50 290 -19 2139 177 65 13 chr1 268544173 268544647 -13649017 + MER34B LTR ERV1 6 504 -61 193 386 167 0 chr1 268544720 268544834 -13648830 + L2 LINE L2 2917 3049 -223 243 288 125 12 chr1 268546107 268546187 -13647477 - MIR SINE MIR -84 124 36 1605 185 25 62 chr1 268547141 268547498 -13646166 + MLT1B LTR MaLR 1 343 -47 3943 112 25 3 chr1 268547498 268548087 -13645577 + LTR43 LTR ERV1 1 602 0 1605 185 25 62 chr1 268548087 268548134 -13645530 + MLT1B LTR MaLR 343 390 0 2067 120 16 13 chr1 268548308 268548617 -13645047 + AluSg SINE Alu 1 310 0 321 182 30 0 chr1 268548684 268548750 -13644914 - MIR SINE MIR 0 262 195 1706 174 10 17 chr1 268548767 268549060 -13644604 - AluJb SINE Alu -21 291 1 1931 206 91 25 chr1 268549068 268549582 -13644082 - MER67C LTR ERV1 -84 626 79 189 0 0 0 chr1 268549582 268549603 -13644061 + (A)n Simple_repeat Simple_repeat 1 21 0 341 329 79 36 chr1 268549692 268549996 -13643668 + L1ME LINE L1 5266 5582 -539 2010 171 3 19 chr1 268550039 268550407 -13643257 + MLT1A1 LTR MaLR 4 365 0 1649 142 24 20 chr1 268550627 268550881 -13642783 + AluJo SINE Alu 1 255 -57 514 153 61 41 chr1 268550884 268550982 -13642682 + AluJo/FRAM SINE Alu 182 281 -31 263 289 36 0 chr1 268551410 268551493 -13642171 - MIR3 SINE MIR -13 195 110 1901 118 4 0 chr1 268552216 268552470 -13641194 - AluSx SINE Alu -57 255 1 307 291 117 0 chr1 268552642 268552745 -13640919 - MIR SINE MIR -64 144 30 2250 100 0 10 chr1 268552813 268553137 -13640527 - AluSx SINE Alu 0 312 1 806 221 19 14 chr1 268553279 268553487 -13640177 - MER3 DNA MER1_type 0 209 1 2142 141 0 6 chr1 268553823 268554136 -13639528 - AluSx SINE Alu -1 311 1 371 274 74 52 chr1 268554171 268554496 -13639168 + HAL1 LINE L1 94 425 -2082 4253 171 17 16 chr1 268555343 268556216 -13637448 - L1MB2 LINE L1 -2 6169 5296 207 69 0 0 chr1 268556229 268556258 -13637406 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 867 165 0 0 chr1 268556258 268556391 -13637273 - AluJb SINE Alu -36 276 144 2156 137 41 16 chr1 268556397 268556763 -13636901 + THE1C LTR MaLR 1 375 0 589 250 8 0 chr1 268556779 268556907 -13636757 - FLAM_C SINE Alu -3 130 2 1646 213 21 21 chr1 268556911 268557386 -13636278 - L1MB2 LINE L1 -846 5300 4826 810 143 8 0 chr1 268557920 268558039 -13635625 + FLAM_C SINE Alu 1 120 -23 1790 282 91 41 chr1 268558048 268558760 -13634904 + L1MA5 LINE L1 52 799 -6410 5530 206 51 15 chr1 268558852 268561750 -13631914 + L1MA5 LINE L1 1719 4723 -2485 5861 166 45 29 chr1 268561851 268563927 -13629737 + L1MA5 LINE L1 5131 7359 -3 491 239 72 18 chr1 268564084 268564251 -13629413 - MLT1J LTR MaLR -8 503 328 212 278 70 72 chr1 268564959 268565352 -13628312 + L2 LINE L2 2702 3087 -185 504 184 101 114 chr1 268565515 268565743 -13627921 + MER46C DNA MER2_type 5 229 -109 2169 78 23 29 chr1 268566008 268566315 -13627349 - AluSq SINE Alu -8 305 1 255 400 38 0 chr1 268567022 268567127 -13626537 - L2 LINE L2 -1 3271 3163 635 170 22 22 chr1 268567812 268567947 -13625717 + Tigger1 DNA MER2_type 1 135 -2283 669 262 144 9 chr1 268568709 268568938 -13624726 - MIR SINE MIR 0 262 3 682 107 48 0 chr1 268568953 268569056 -13624608 + AluJo SINE Alu 29 136 -176 29 28 0 0 chr1 268569056 268569092 -13624572 + AT_rich Low_complexity Low_complexity 1 36 0 354 231 0 33 chr1 268570253 268570344 -13623320 + CT-rich Low_complexity Low_complexity 4 91 0 1947 124 0 0 chr1 268570346 268570612 -13623052 - AluSx SINE Alu -32 280 15 1689 189 22 70 chr1 268570870 268571184 -13622480 - L1MB7 LINE L1 -23 6161 5873 1730 107 20 0 chr1 268571184 268571436 -13622228 - L1PA12 LINE L1 0 6168 5912 1689 189 22 70 chr1 268571436 268571565 -13622099 - L1MB7 LINE L1 -311 5873 5739 980 209 127 11 chr1 268571601 268571869 -13621795 - MLT1F1 LTR MaLR 0 567 269 835 257 33 5 chr1 268571881 268572095 -13621569 - MLT1D-int LTR MaLR -1 1370 1151 1177 97 11 0 chr1 268572123 268572298 -13621366 - AluY SINE Alu 0 311 135 2504 231 40 106 chr1 268572313 268573351 -13620313 - MLT1D-int LTR MaLR -231 1140 172 925 248 90 3 chr1 268573376 268573711 -13619953 + L1M4 LINE L1 3613 3976 -2170 572 213 0 0 chr1 268573715 268573837 -13619827 - MLT1D-int LTR MaLR -1226 145 24 2138 237 22 6 chr1 268573896 268574393 -13619271 - MLT1D LTR MaLR 0 505 1 1540 246 96 23 chr1 268574403 268575178 -13618486 - L1M4 LINE L1 -1717 4429 3599 1368 199 65 28 chr1 268575290 268575581 -13618083 - AluJo SINE Alu -10 302 1 263 230 14 0 chr1 268576333 268576407 -13617257 - L1M4 LINE L1 -1956 4190 4116 1745 157 56 59 chr1 268576686 268577061 -13616603 - THE1C LTR MaLR -1 374 1 237 367 0 0 chr1 268577330 268577428 -13616236 - L1M4 LINE L1 -2299 3847 3750 2452 241 52 13 chr1 268577441 268578127 -13615537 - L1MC4a LINE L1 -14 7794 7082 882 225 94 47 chr1 268578145 268578443 -13615221 + MLT1-int LTR MaLR 331 642 -729 430 342 21 26 chr1 268578606 268578796 -13614868 + MLT1-int LTR MaLR 692 880 -491 513 146 49 0 chr1 268578897 268578979 -13614685 + AluJ/FRAM SINE Alu 216 301 -11 603 261 82 80 chr1 268579135 268579159 -13614505 + MLT1-int LTR MaLR 985 1007 -364 2220 167 81 8 chr1 268579159 268579554 -13614110 - MSTB LTR MaLR -2 424 1 603 261 82 80 chr1 268579554 268579893 -13613771 + MLT1-int LTR MaLR 1007 1349 -22 23 33 0 0 chr1 268580058 268580088 -13613576 + AT_rich Low_complexity Low_complexity 1 30 0 1437 184 25 39 chr1 268580321 268580604 -13613060 - AluJo SINE Alu -31 281 3 460 212 176 48 chr1 268580661 268580826 -13612838 + MER5A DNA MER1_type 4 189 0 251 273 15 0 chr1 268580828 268580894 -13612770 + MLT1J2 LTR MaLR 259 325 -125 1992 203 107 83 chr1 268581031 268581750 -13611914 + LTR1B LTR ERV1 85 820 -6 837 148 16 0 chr1 268581811 268581939 -13611725 + AluSg/x SINE Alu 165 294 -18 21 0 0 0 chr1 268581939 268581960 -13611704 + AT_rich Low_complexity Low_complexity 1 21 0 399 318 70 30 chr1 268582281 268582580 -13611084 + HAL1 LINE L1 875 1185 -1322 1432 215 26 0 chr1 268582622 268582962 -13610702 - L1PB4 LINE L1 -1012 5134 4786 * 4783 174 15 15 chr1 268582957 268583947 -13609717 + L1PB4 LINE L1 5163 6151 -5 276 246 115 39 chr1 268583956 268584086 -13609578 + HAL1 LINE L1 1230 1369 -1138 668 277 83 38 chr1 268584102 268584441 -13609223 + HAL1 LINE L1 1416 1769 -738 241 312 38 32 chr1 268584457 268584614 -13609050 + HAL1 LINE L1 1816 1973 -534 280 280 0 0 chr1 268584822 268584897 -13608767 + HAL1 LINE L1 2078 2152 -355 292 279 0 0 chr1 268584992 268585053 -13608611 - L2 LINE L2 -23 3290 3230 289 208 20 40 chr1 268585766 268585867 -13607797 + MER107 DNA MER1_type 76 174 -23 5583 193 35 25 chr1 268586081 268588278 -13605386 + HERVL74 LTR ERVL 1041 3332 -2353 721 177 154 23 chr1 268588250 268588425 -13605239 + HERVL74 LTR ERVL 3455 3652 -2033 * 876 181 12 6 chr1 268588420 268588586 -13605078 + HERVL74 LTR ERVL 3902 4068 -1617 660 184 0 0 chr1 268588579 268588682 -13604982 + HERVL74 LTR ERVL 4586 4688 -997 * 618 289 45 6 chr1 268588689 268588845 -13604819 + HERVL74 LTR ERVL 4641 4802 -883 255 188 14 43 chr1 268588837 268588906 -13604758 + HERVL74 LTR ERVL 4966 5032 -653 * 819 206 0 0 chr1 268588964 268589095 -13604569 - FLAM_C SINE Alu -10 133 3 2669 209 25 66 chr1 268589097 268589971 -13603693 - L1M4 LINE L1 -942 5204 4367 195 100 0 0 chr1 268589991 268590021 -13603643 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 473 256 0 0 chr1 268590324 268590441 -13603223 - L1ME2 LINE L1 -59 6105 5989 2065 214 58 56 chr1 268590447 268591222 -13602442 - L1ME2 LINE L1 -314 5850 5074 326 85 21 0 chr1 268591226 268591273 -13602391 - MLT2D LTR ERVL 0 414 367 224 225 0 0 chr1 268591273 268591313 -13602351 + (TG)n Simple_repeat Simple_repeat 2 41 0 266 224 0 0 chr1 268591314 268591390 -13602274 - L1ME2 LINE L1 -1704 4442 4367 231 88 0 0 chr1 268591410 268591444 -13602220 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 669 167 35 0 chr1 268591516 268591690 -13601974 + (TA)n Simple_repeat Simple_repeat 1 180 0 643 149 40 6 chr1 268591709 268591883 -13601781 + (TA)n Simple_repeat Simple_repeat 1 180 0 569 120 0 0 chr1 268592010 268592085 -13601579 + AluS SINE Alu 221 295 -14 391 175 12 12 chr1 268592085 268592165 -13601499 - L1M4 LINE L1 -1211 4935 4856 722 197 8 0 chr1 268592276 268592403 -13601261 - FLAM_C SINE Alu -4 129 2 2163 105 7 3 chr1 268594209 268594503 -13599161 + AluSq SINE Alu 1 295 -18 185 338 136 46 chr1 268595957 268596913 -13596751 + L2 LINE L2 70 1111 -2203 2348 95 0 19 chr1 268596970 268597286 -13596378 + AluSg SINE Alu 1 310 0 189 323 20 0 chr1 268597384 268597483 -13596181 + L2 LINE L2 1317 1417 -1897 2245 93 16 26 chr1 268597942 268598255 -13595409 - AluSx SINE Alu -1 311 2 250 319 0 33 chr1 268598334 268598425 -13595239 - L2 LINE L2 0 3272 3185 599 320 26 13 chr1 268598455 268598686 -13594978 - MIR SINE MIR -10 252 19 16563 129 20 73 chr1 268598860 268600793 -13592871 - Tigger2 DNA MER2_type 0 2718 984 1874 153 7 16 chr1 268600793 268601100 -13592564 - AluJb SINE Alu -8 304 1 16563 129 20 73 chr1 268601100 268602032 -13591632 - Tigger2 DNA MER2_type -1734 984 4 26 30 0 0 chr1 268602254 268602287 -13591377 + AT_rich Low_complexity Low_complexity 1 33 0 317 246 82 45 chr1 268602383 268602493 -13591171 - L1ME4a LINE L1 -2 6119 6006 1695 111 56 15 chr1 268602693 268602989 -13590675 + AluSg SINE Alu 1 307 0 899 306 128 5 chr1 268604540 268604922 -13588742 - L3 LINE CR1 -2 1575 1147 3499 151 9 5 chr1 268605136 268605692 -13587972 - L1MB3 LINE L1 0 6183 5626 187 286 149 74 chr1 268605701 268605876 -13587788 - L3 LINE CR1 -671 906 719 2023 254 77 15 chr1 268606716 268607239 -13586425 - MLT1H1 LTR MaLR 0 555 1 4802 67 0 41 chr1 268607243 268607855 -13585809 - LTR14C LTR ERVK 0 587 1 210 340 0 0 chr1 268608479 268608532 -13585132 - L2 LINE L2 -1897 1417 1365 355 209 82 45 chr1 268608679 268608789 -13584875 - L1ME4a LINE L1 -2 6119 6006 279 237 52 21 chr1 268608929 268609026 -13584638 - L1ME4a LINE L1 -304 5817 5718 252 0 0 0 chr1 268609037 268609065 -13584599 + (TG)n Simple_repeat Simple_repeat 2 29 0 422 201 132 58 chr1 268609105 268609279 -13584385 - L1ME4a LINE L1 -403 5718 5532 195 42 0 0 chr1 268609730 268609754 -13583910 + (CA)n Simple_repeat Simple_repeat 2 25 0 315 272 147 55 chr1 268610062 268610090 -13583574 - L1M2 LINE L1 -5605 1244 1220 215 79 26 0 chr1 268610090 268610128 -13583536 + (CGGG)n Simple_repeat Simple_repeat 2 40 0 315 272 147 55 chr1 268610128 268610452 -13583212 - L1M2 LINE L1 -5629 1220 736 25 0 0 0 chr1 268610641 268610666 -13582998 + GC_rich Low_complexity Low_complexity 1 25 0 1123 216 93 60 chr1 268613465 268613683 -13579981 - MER39 LTR ERV1 0 682 473 1386 174 34 101 chr1 268613683 268614011 -13579653 + AluJo SINE Alu 1 306 -6 1123 216 93 60 chr1 268614011 268614282 -13579382 - MER39 LTR ERV1 -209 473 1 2309 100 0 10 chr1 268614663 268614973 -13578691 + AluSc SINE Alu 3 309 0 1591 178 7 19 chr1 268615070 268615379 -13578285 - AluJo SINE Alu -7 305 1 2111 109 0 0 chr1 268615687 268615962 -13577702 + AluSg SINE Alu 1 275 -35 23 0 0 0 chr1 268615975 268615998 -13577666 + GC_rich Low_complexity Low_complexity 1 23 0 1565 209 39 15 chr1 268616018 268616349 -13577315 + MER58B DNA MER1_type 3 341 0 460 268 123 36 chr1 268616917 268617137 -13576527 - MIR SINE MIR -3 259 21 1142 153 26 6 chr1 268617160 268617450 -13576214 + MLT1B LTR MaLR 1 390 0 282 264 28 0 chr1 268618228 268618300 -13575364 + MER116 DNA Mariner 6 79 -1 465 129 0 0 chr1 268619119 268619189 -13574475 + L1MA5A LINE L1 5883 5952 -345 2222 136 23 6 chr1 268619283 268619637 -13574027 + L1MA5A LINE L1 5936 6295 -2 2077 106 13 20 chr1 268619647 268619948 -13573716 - AluSx SINE Alu -13 299 1 263 260 0 31 chr1 268620491 268620587 -13573077 + (CACCT)n Simple_repeat Simple_repeat 3 95 0 1364 276 103 52 chr1 268620869 268621013 -13572651 - L2 LINE L2 0 3313 3178 4022 119 52 16 chr1 268621013 268621643 -13572021 - MER39B LTR ERV1 0 653 1 1364 276 103 52 chr1 268621643 268622466 -13571198 - L2 LINE L2 -135 3178 2307 200 351 70 18 chr1 268622592 268622706 -13570958 - L2 LINE L2 -202 3070 2951 32 43 0 0 chr1 268622924 268622970 -13570694 + AT_rich Low_complexity Low_complexity 1 46 0 940 205 11 5 chr1 268624320 268624510 -13569154 + L1PA16 LINE L1 5960 6150 -16 2060 106 7 7 chr1 268624535 268624841 -13568823 + AluSx SINE Alu 1 306 0 2329 101 7 0 chr1 268630083 268630391 -13563273 + AluSg SINE Alu 1 310 0 283 256 42 55 chr1 268630491 268630626 -13563038 - MIR SINE MIR -61 147 33 210 294 98 0 chr1 268631368 268631460 -13562204 - L2 LINE L2 -1 3312 3212 23 33 0 0 chr1 268631568 268631598 -13562066 + AT_rich Low_complexity Low_complexity 1 30 0 1736 249 79 37 chr1 268631719 268632726 -13560938 - L2 LINE L2 0 3313 2273 193 303 182 15 chr1 268632826 268632972 -13560692 - L2 LINE L2 -1474 1840 1720 2459 79 0 0 chr1 268632972 268633275 -13560389 + AluY SINE Alu 1 303 -8 193 303 182 15 chr1 268633275 268633392 -13560272 - L2 LINE L2 -1594 1720 1533 43 47 0 0 chr1 268634362 268634426 -13559238 + AT_rich Low_complexity Low_complexity 1 64 0 1837 164 3 0 chr1 268636759 268637051 -13556613 - AluSx SINE Alu -8 304 12 2362 179 71 26 chr1 268637703 268638238 -13555426 - MER34B LTR ERV1 -5 560 2 2024 119 3 42 chr1 268638829 268639139 -13554525 - AluSx SINE Alu -14 298 1 1107 218 133 56 chr1 268640060 268640399 -13553265 - MLT1A1 LTR MaLR 0 365 1 1228 282 60 85 chr1 268640406 268640971 -13552693 - L2 LINE L2 0 3313 2736 2320 105 0 0 chr1 268640971 268641267 -13552397 + AluY SINE Alu 1 296 -15 1228 282 60 85 chr1 268641267 268641312 -13552352 - L2 LINE L2 -577 2736 2691 1488 242 129 28 chr1 268641312 268641770 -13551894 + MLT1D LTR MaLR 1 504 -1 1228 282 60 85 chr1 268641770 268642281 -13551383 - L2 LINE L2 -622 2691 2215 389 299 134 32 chr1 268642284 268642441 -13551223 - MER5B DNA MER1_type -3 175 3 243 0 0 0 chr1 268642590 268642617 -13551047 + (TTA)n Simple_repeat Simple_repeat 2 28 0 556 344 30 22 chr1 268642622 268642983 -13550681 - L2 LINE L2 -1108 2206 1843 273 209 60 0 chr1 268644548 268644615 -13549049 - MLT1I LTR MaLR -25 384 314 2307 109 0 7 chr1 268644622 268644925 -13548739 - AluSx SINE Alu -11 301 1 446 229 28 18 chr1 268644925 268645034 -13548630 - MLT1I LTR MaLR -69 340 231 1915 204 36 17 chr1 268645541 268645899 -13547765 - MLT1A1 LTR MaLR 0 365 1 705 280 82 5 chr1 268646629 268646836 -13546828 - MIR SINE MIR -22 240 18 456 299 82 7 chr1 268648447 268648594 -13545070 + MIR SINE MIR 51 208 -54 2640 195 52 10 chr1 268648930 268649448 -13544216 + MER74A LTR ERVL 18 557 -1 2785 183 80 0 chr1 268649460 268649935 -13543729 + MLT2B2 LTR ERVL 3 515 0 3276 178 24 9 chr1 268649936 268650253 -13543411 + MLT1A1-int LTR MaLR 2 334 -1401 1255 82 53 0 chr1 268650253 268650423 -13543241 + L1PA8 LINE L1 5989 6167 -5 3276 178 24 9 chr1 268650423 268650689 -13542975 + MLT1A1-int LTR MaLR 334 594 -1141 694 257 0 0 chr1 268650692 268650828 -13542836 + FLAM_A SINE Alu 3 138 -4 374 259 7 16 chr1 268650828 268650994 -13542670 + MLT1A1-int LTR MaLR 590 785 -950 * 2323 205 120 29 chr1 268650993 268651575 -13542089 + MLT1A1-int LTR MaLR 1050 1735 0 2088 149 53 25 chr1 268651575 268651930 -13541734 + MLT1A1 LTR MaLR 1 365 0 511 244 24 16 chr1 268652207 268652330 -13541334 - LTR51 LTR ERV1 0 671 548 * 1959 174 20 9 chr1 268652297 268652642 -13541022 - MER65C LTR ERV1 -112 349 1 1709 166 14 7 chr1 268652662 268652976 -13540688 - AluJb SINE Alu 0 316 1 575 156 37 0 chr1 268653657 268653792 -13539872 + GA-rich Low_complexity Low_complexity 3 142 0 3047 133 97 43 chr1 268654627 268655259 -13538405 - Tigger3(Golem) DNA MER2_type 0 3029 2364 21 0 0 0 chr1 268655367 268655388 -13538276 + AT_rich Low_complexity Low_complexity 1 21 0 2237 83 0 0 chr1 268655632 268655910 -13537754 - AluSg SINE Alu -32 278 1 315 340 68 39 chr1 268656071 268656277 -13537387 - L3 LINE CR1 -335 1242 1031 4091 162 61 0 chr1 268657044 268657718 -13535946 - LTR62 LTR ERVK -4 715 1 243 0 0 0 chr1 268658778 268658805 -13534859 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 923 86 0 0 chr1 268658815 268658932 -13534732 - AluSg/x SINE Alu -39 270 154 2805 13 0 0 chr1 268659193 268659497 -13534167 + AluY SINE Alu 1 304 -7 200 345 131 39 chr1 268659949 268660155 -13533509 + L2 LINE L2 3007 3231 -41 364 326 68 62 chr1 268660234 268660355 -13533309 - L1ME LINE L1 -298 5823 5704 2316 92 7 3 chr1 268660355 268660649 -13533015 - AluSq SINE Alu -18 295 1 364 326 68 62 chr1 268660649 268660931 -13532733 - L1ME LINE L1 -417 5704 5414 183 80 0 0 chr1 268660931 268660956 -13532708 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 364 326 68 62 chr1 268660956 268661048 -13532616 - L1ME LINE L1 -707 5414 5324 689 169 4 2 chr1 268661310 268661570 -13532094 + AluSx SINE Alu 1 312 0 2516 95 47 33 chr1 268662148 268662507 -13531157 - THE1B LTR MaLR 0 364 1 253 227 23 0 chr1 268664321 268664409 -13529255 + L1MC4 LINE L1 6614 6703 -1339 940 198 41 29 chr1 268664740 268664983 -13528681 - LTR48B LTR ERV1 -5 639 394 1090 232 45 51 chr1 268667201 268667576 -13526088 - MER93b LTR ERV1 0 373 1 4382 151 65 10 chr1 268668464 268669304 -13524360 - MER4D LTR ERV1 0 869 1 232 298 0 0 chr1 268670304 268670361 -13523303 + AluYa8 SINE Alu 94 150 -150 769 200 0 0 chr1 268670364 268670489 -13523175 + AluJb SINE Alu 172 296 -16 857 219 0 11 chr1 268670506 268670684 -13522980 + FRAM SINE Alu 1 168 -8 4008 138 34 12 chr1 268671587 268672226 -13521438 - MER39B LTR ERV1 0 653 1 217 264 281 6 chr1 268672345 268672523 -13521141 + MIR SINE MIR 5 231 -31 786 192 8 0 chr1 268673171 268673301 -13520363 - FLAM_A SINE Alu -2 131 1 216 269 97 30 chr1 268673319 268673453 -13520211 - L2 LINE L2 -1303 2011 1869 261 0 0 0 chr1 268673638 268673667 -13519997 + (CA)n Simple_repeat Simple_repeat 2 30 0 2952 81 58 21 chr1 268675176 268675608 -13518056 - LTR7 LTR ERV1 -2 448 1 2669 96 42 35 chr1 268675608 268676203 -13517461 - HERVH LTR ERV1 0 7713 5600 2892 149 32 6 chr1 268676207 268676676 -13516988 - HERVH LTR ERV1 -2567 5146 4666 1162 301 61 41 chr1 268676776 268676989 -13516675 + L2 LINE L2 2469 2676 -637 1488 242 129 28 chr1 268676989 268677447 -13516217 - MLT1D LTR MaLR -1 504 1 1162 301 61 41 chr1 268677447 268677492 -13516172 + L2 LINE L2 2676 2719 -594 2320 105 0 0 chr1 268677492 268677788 -13515876 - AluY SINE Alu -15 296 1 1162 301 61 41 chr1 268677788 268678353 -13515311 + L2 LINE L2 2719 3313 0 1107 218 133 56 chr1 268678360 268678699 -13514965 + MLT1A1 LTR MaLR 1 365 0 2015 120 3 42 chr1 268679620 268679929 -13513735 + AluSx SINE Alu 1 297 -15 2362 179 71 26 chr1 268680520 268681055 -13512609 + MER34B LTR ERV1 2 560 -5 1837 164 3 0 chr1 268681707 268681999 -13511665 + AluSx SINE Alu 12 304 -8 43 47 0 0 chr1 268684331 268684395 -13509269 + AT_rich Low_complexity Low_complexity 1 64 0 2371 86 0 3 chr1 268685482 268685786 -13507878 - AluY SINE Alu -8 303 1 1791 180 25 62 chr1 268685960 268686007 -13507657 - MLT1B LTR MaLR 0 390 343 4247 115 25 3 chr1 268686007 268686596 -13507068 - LTR43 LTR ERV1 0 602 1 1791 180 25 62 chr1 268686596 268686953 -13506711 - MLT1B LTR MaLR -47 343 1 236 288 125 12 chr1 268687907 268687987 -13505677 + MIR SINE MIR 36 124 -84 188 386 167 0 chr1 268689260 268689374 -13504290 - L2 LINE L2 -223 3049 2917 2366 177 65 13 chr1 268689447 268689921 -13503743 - MER34B LTR ERV1 -61 504 6 1642 128 4 4 chr1 268690137 268690379 -13503285 - AluSg1 SINE Alu -18 291 50 2090 135 0 0 chr1 268691351 268691648 -13502016 + AluSx SINE Alu 1 297 -15 180 207 0 0 chr1 268692432 268692461 -13501203 - L2 LINE L2 -17 3255 3227 * 483 277 34 14 chr1 268692458 268692606 -13501058 - MIR SINE MIR -83 179 29 3715 133 35 8 chr1 268693153 268693754 -13499910 - LTR29 LTR ERV1 -3 619 3 371 234 170 35 chr1 268694526 268694564 -13499100 - L1ME2 LINE L1 -10 6390 6358 2143 116 3 0 chr1 268694564 268694856 -13498808 + AluSq SINE Alu 1 293 -20 371 234 170 35 chr1 268694856 268694988 -13498676 - L1ME2 LINE L1 -42 6358 6197 1920 127 7 7 chr1 268694999 268695306 -13498358 - L1MA3 LINE L1 -107 6198 5892 386 194 0 0 chr1 268695299 268695371 -13498293 - L1ME2 LINE L1 -197 6203 6132 * 538 146 36 18 chr1 268695373 268695483 -13498181 + MER4C LTR ERV1 5 116 -349 611 171 16 187 chr1 268695568 268695825 -13497839 + MER4A LTR ERV1 137 349 -315 758 202 118 108 chr1 268695835 268695943 -13497721 + MER4C LTR ERV1 278 263 -202 2390 163 65 0 chr1 268695943 268696343 -13497321 + MSTB LTR MaLR 1 426 0 758 202 118 108 chr1 268696343 268696550 -13497114 + MER4C LTR ERV1 262 465 0 2058 241 65 43 chr1 268696551 268697903 -13495761 - L1ME2 LINE L1 -265 6135 4741 848 266 98 26 chr1 268697892 268698498 -13495166 - L1ME2 LINE L1 -4472 2091 1283 * 1638 209 50 9 chr1 268698500 268698840 -13494824 - MLT1A1 LTR MaLR 0 365 12 721 267 95 28 chr1 268698855 268699383 -13494281 - L1ME2 LINE L1 -4982 1390 828 245 214 18 0 chr1 268700093 268700149 -13493515 + Tigger3b DNA MER2_type 326 382 -849 * 1833 163 12 18 chr1 268700138 268700464 -13493200 - Tigger3b DNA MER2_type -906 325 2 228 139 0 0 chr1 268700662 268700698 -13492966 + L1MC/D LINE L1 5845 5880 -1928 255 358 0 0 chr1 268701594 268701675 -13491989 + MIR SINE MIR 72 152 -110 566 93 12 0 chr1 268702885 268702971 -13490693 + (TTC)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr1 268704249 268704270 -13489394 + AT_rich Low_complexity Low_complexity 1 21 0 2237 83 0 0 chr1 268704513 268704791 -13488873 - AluSg SINE Alu -32 278 1 315 340 68 39 chr1 268704952 268705158 -13488506 - L3 LINE CR1 -335 1242 1031 4424 155 18 11 chr1 268705925 268706635 -13487029 - LTR62 LTR ERVK -4 715 1 243 0 0 0 chr1 268707695 268707722 -13485942 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 923 86 0 0 chr1 268707732 268707849 -13485815 - AluSg/x SINE Alu -39 270 154 2834 7 0 0 chr1 268708110 268708414 -13485250 + AluY SINE Alu 1 304 -7 225 340 131 39 chr1 268708866 268709072 -13484592 + L2 LINE L2 3007 3231 -41 364 326 68 62 chr1 268709151 268709272 -13484392 - L1ME LINE L1 -298 5823 5704 2331 88 7 3 chr1 268709272 268709566 -13484098 - AluSq SINE Alu -18 295 1 364 326 68 62 chr1 268709566 268709848 -13483816 - L1ME LINE L1 -417 5704 5414 183 80 0 0 chr1 268709848 268709873 -13483791 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 364 326 68 62 chr1 268709873 268709965 -13483699 - L1ME LINE L1 -707 5414 5324 689 169 4 2 chr1 268710227 268710487 -13483177 + AluSx SINE Alu 1 310 0 2516 95 47 33 chr1 268711065 268711424 -13482240 - THE1B LTR MaLR 0 364 1 253 227 23 0 chr1 268713238 268713326 -13480338 + L1MC4 LINE L1 6614 6703 -1339 940 198 41 29 chr1 268713657 268713900 -13479764 - LTR48B LTR ERV1 -5 639 394 1090 232 45 51 chr1 268716118 268716493 -13477171 - MER93b LTR ERV1 0 373 1 4394 150 65 10 chr1 268717381 268718221 -13475443 - MER4D LTR ERV1 0 869 1 232 298 0 0 chr1 268719221 268719278 -13474386 + AluYa8 SINE Alu 94 150 -150 769 200 0 0 chr1 268719281 268719406 -13474258 + AluJb SINE Alu 172 296 -16 857 219 0 11 chr1 268719423 268719601 -13474063 + FRAM SINE Alu 1 168 -8 3990 144 33 11 chr1 268720504 268721143 -13472521 - MER39B LTR ERV1 0 653 1 236 253 281 6 chr1 268721262 268721440 -13472224 + MIR SINE MIR 5 231 -31 786 192 8 0 chr1 268722088 268722218 -13471446 - FLAM_A SINE Alu -2 131 1 216 269 97 30 chr1 268722236 268722370 -13471294 - L2 LINE L2 -1303 2011 1869 405 0 0 0 chr1 268722555 268722600 -13471064 + (CA)n Simple_repeat Simple_repeat 2 46 0 2952 81 58 21 chr1 268724110 268724542 -13469122 - LTR7 LTR ERV1 -2 448 1 2630 99 42 35 chr1 268724542 268725137 -13468527 - HERVH LTR ERV1 0 7713 5600 4268 139 23 2 chr1 268725141 268725786 -13467878 - HERVH LTR ERV1 -2567 5146 4488 3304 119 4 4 chr1 268725788 268726282 -13467382 - HERVH LTR ERV1 -3720 3993 3500 906 142 20 0 chr1 268726281 268726429 -13467235 - HERVH LTR ERV1 -4423 3290 3140 * 17493 97 14 38 chr1 268726426 268729306 -13464358 - HERVH LTR ERV1 -4729 2984 437 942 84 0 8 chr1 268729286 268729417 -13464247 + HERVH LTR ERV1 17 146 -7567 * 2855 97 58 21 chr1 268729434 268729866 -13463798 - LTR7 LTR ERV1 -2 448 1 641 214 18 0 chr1 268730558 268730670 -13462994 + MER81 DNA DNA 1 114 0 232 234 0 0 chr1 268730714 268730761 -13462903 - L2 LINE L2 -13 3259 3213 845 289 86 28 chr1 268730859 268731253 -13462411 + LTR16A LTR ERVL 33 449 -1 225 330 130 34 chr1 268731279 268731621 -13462043 - L2 LINE L2 -182 3090 2715 306 0 0 0 chr1 268732527 268732561 -13461103 + (TG)n Simple_repeat Simple_repeat 1 34 0 2032 124 0 0 chr1 268732562 268732844 -13460820 - AluSx SINE Alu -30 282 1 2264 101 0 0 chr1 268733584 268733870 -13459794 + AluSx SINE Alu 1 286 -26 2309 89 3 3 chr1 268734371 268734663 -13459001 - AluSc SINE Alu -17 292 1 682 145 61 23 chr1 268735889 268736020 -13457644 + L1MDa LINE L1 48 183 -6357 1562 253 116 49 chr1 268736052 268736709 -13456955 + L1MDa LINE L1 578 1278 -5262 1386 208 11 0 chr1 268736690 268736969 -13456695 + L1MB3 LINE L1 3975 4256 -1890 * 4433 194 32 16 chr1 268736987 268737369 -13456295 + L1MB3 LINE L1 4252 4626 -1557 4433 175 21 3 chr1 268737369 268738125 -13455539 + L1MB3 LINE L1 5413 6182 -1 4433 194 32 16 chr1 268738125 268739015 -13454649 + L1MB3 LINE L1 4626 6182 -1 2278 133 21 21 chr1 268739273 268739648 -13454016 - THE1C LTR MaLR 0 375 1 231 281 101 72 chr1 268739760 268739899 -13453765 + LTR40a LTR ERVL 3 145 -374 2380 41 0 21 chr1 268740085 268740405 -13453259 + AluY SINE Alu 1 314 0 500 282 0 0 chr1 268741642 268741759 -13451905 - L2 LINE L2 -10 3303 3187 251 323 10 10 chr1 268741746 268741845 -13451819 - MIR SINE MIR -11 251 153 * 318 348 105 11 chr1 268741961 268742142 -13451522 - MIR SINE MIR -15 247 50 182 293 0 0 chr1 268742625 268742666 -13450998 - MER5A DNA MER1_type 0 189 149 1099 156 0 6 chr1 268742666 268742826 -13450838 + FRAM SINE Alu 1 159 -7 224 290 130 20 chr1 268743082 268743182 -13450482 + MER5A DNA MER1_type 57 167 -22 199 402 98 8 chr1 268743087 268743209 -13450455 - MER5A DNA MER1_type -50 139 7 * 2204 234 79 86 chr1 268743577 268744818 -13448846 + L1MC5 LINE L1 6676 7907 -54 261 309 93 29 chr1 268744913 268745052 -13448612 - L2 LINE L2 -1238 2076 1929 204 313 53 8 chr1 268745197 268745328 -13448336 - L2 LINE L2 -1612 1702 1566 180 267 80 13 chr1 268745399 268745474 -13448190 + MER5A DNA MER1_type 21 100 -89 189 274 48 0 chr1 268745985 268746047 -13447617 + MIR3 SINE MIR 15 79 -129 483 235 176 56 chr1 268746970 268747276 -13446388 + L2 LINE L2 2967 3309 -4 1842 157 17 0 chr1 268747562 268747861 -13445803 - THE1C LTR MaLR 0 375 72 1631 213 0 3 chr1 268749230 268749540 -13444124 + AluJb SINE Alu 1 309 -3 258 298 0 24 chr1 268749689 268749773 -13443891 + CT-rich Low_complexity Low_complexity 5 86 0 900 210 0 0 chr1 268749897 268750059 -13443605 + FRAM SINE Alu 7 168 -8 464 215 25 0 chr1 268750204 268750367 -13443297 + (TA)n Simple_repeat Simple_repeat 2 168 0 349 314 6 6 chr1 268750381 268750553 -13443111 + (TATATG)n Simple_repeat Simple_repeat 2 173 0 259 164 55 0 chr1 268750615 268750670 -13442994 - L1MC/D LINE L1 -1979 5829 5772 627 291 20 15 chr1 268751082 268751278 -13442386 + MER21B LTR ERV1 1 197 -666 324 352 56 0 chr1 268751500 268751628 -13442036 + MIR SINE MIR 12 149 -59 356 329 90 30 chr1 268751888 268752055 -13441609 - MIR SINE MIR -82 180 4 507 239 138 0 chr1 268752867 268753026 -13440638 - MLT1J2 LTR MaLR 0 450 270 1520 153 51 35 chr1 268753269 268753680 -13439984 + MLT2B2 LTR ERVL 1 496 -19 1404 120 10 27 chr1 268753707 268753998 -13439666 + THE1C LTR MaLR 1 375 0 1938 170 67 6 chr1 268754291 268754632 -13439032 + MLT1A1 LTR MaLR 2 363 -2 208 273 173 55 chr1 268756134 268756244 -13437420 + L2 LINE L2 3190 3312 -1 21 0 0 0 chr1 268756992 268757013 -13436651 + AT_rich Low_complexity Low_complexity 1 21 0 529 204 11 0 chr1 268757351 268757444 -13436220 + MER7A DNA MER2_type 1 92 -254 802 212 122 21 chr1 268757445 268757634 -13436030 - AluJo SINE Alu -12 300 93 1126 171 64 23 chr1 268757635 268757902 -13435762 + L1M3 LINE L1 5497 5749 -422 636 222 43 0 chr1 268757895 268758057 -13435607 - L1M4 LINE L1 -1054 5092 4924 * 250 290 43 0 chr1 268758059 268758128 -13435536 + MIR SINE MIR 117 188 -74 572 332 49 10 chr1 268758158 268758363 -13435301 - MIR SINE MIR -45 217 5 1409 236 47 126 chr1 268758413 268759050 -13434614 - MLT1E LTR MaLR 0 593 7 1448 101 20 0 chr1 268759051 268759250 -13434414 - AluSp SINE Alu -110 203 1 243 313 0 0 chr1 268760145 268760212 -13433452 + L2 LINE L2 3247 3313 0 475 309 85 25 chr1 268761034 268761235 -13432429 - MIR SINE MIR -26 236 24 2406 99 0 0 chr1 268761299 268761611 -13432053 + AluSx SINE Alu 1 312 0 3630 147 71 8 chr1 268762177 268762783 -13430881 - LTR48B LTR ERV1 0 644 1 298 188 38 0 chr1 268763463 268763543 -13430121 + CT-rich Low_complexity Low_complexity 2 84 0 2963 161 73 2 chr1 268763572 268764062 -13429602 - LTR45 LTR ERV1 0 525 1 279 342 101 40 chr1 268764076 268764275 -13429389 - L2 LINE L2 -46 3226 3016 2217 105 3 19 chr1 268764590 268764731 -13428933 - AluSq SINE Alu -3 310 168 5291 97 60 50 chr1 268764731 268765549 -13428115 + LTR12 LTR ERV1 1 826 0 2217 105 3 19 chr1 268765549 268765722 -13427942 - AluSq SINE Alu -145 168 1 359 106 121 0 chr1 268765807 268765873 -13427791 + AluSx SINE Alu 1 74 -229 1156 210 36 10 chr1 268765885 268766187 -13427477 - MER61C LTR ERV1 -30 404 1 28605 99 26 31 chr1 268766187 268770073 -13423591 - MER61C-int LTR ERV1 0 5217 1314 2943 9 0 0 chr1 268770073 268770390 -13423274 + AluYb8 SINE Alu 1 317 -1 28605 99 26 31 chr1 268770390 268770401 -13423263 - MER61C-int LTR ERV1 -3903 1314 1304 2304 56 26 33 chr1 268770401 268770705 -13422959 + AluY SINE Alu 1 302 -9 28605 99 26 31 chr1 268770705 268771086 -13422578 - MER61C-int LTR ERV1 -3913 1304 958 4349 158 68 21 chr1 268771079 268771891 -13421773 - MER61C-int LTR ERV1 -4367 850 1 * 1150 155 149 5 chr1 268771904 268772158 -13421506 - MER61C LTR ERV1 -28 404 18 1546 126 0 35 chr1 268772174 268772405 -13421259 + AluSx SINE Alu 69 291 -19 1977 141 17 3 chr1 268772464 268772761 -13420903 + AluSx SINE Alu 1 301 -11 2805 169 40 112 chr1 268772982 268773237 -13420427 - MER4E LTR ERV1 -8 758 486 1883 147 17 3 chr1 268773237 268773529 -13420135 + AluSx SINE Alu 6 301 -11 2805 169 40 112 chr1 268773529 268774048 -13419616 - MER4E LTR ERV1 -280 486 42 2566 50 13 0 chr1 268774048 268774350 -13419314 + AluY SINE Alu 1 306 -5 2805 169 40 112 chr1 268774350 268774390 -13419274 - MER4E LTR ERV1 -724 42 1 3287 124 50 110 chr1 268775239 268775914 -13417750 + MER41B LTR ERV1 1 635 0 311 213 28 46 chr1 268776553 268776661 -13417003 - LTR37B LTR ERV1 -95 373 268 488 113 0 0 chr1 268776862 268776942 -13416722 - AluSc SINE Alu -3 306 227 217 215 13 13 chr1 268777010 268777089 -13416575 + (TA)n Simple_repeat Simple_repeat 2 80 0 234 0 0 0 chr1 268777093 268777119 -13416545 + (CA)n Simple_repeat Simple_repeat 2 27 0 780 215 98 10 chr1 268777507 268777712 -13415952 + MIR SINE MIR 31 253 -9 272 179 0 18 chr1 268777999 268778055 -13415609 - L1MEc LINE L1 -4030 2366 2312 377 333 19 0 chr1 268778748 268778856 -13414808 - L2 LINE L2 0 3313 3204 351 284 101 9 chr1 268778901 268779010 -13414654 - L2 LINE L2 -14 3299 3181 363 314 51 57 chr1 268779156 268779331 -13414333 - MIR3 SINE MIR -28 180 7 2489 175 19 7 chr1 268779550 268779968 -13413696 + MER61B LTR ERV1 3 425 0 2160 84 6 61 chr1 268780584 268780895 -13412769 + AluSq SINE Alu 1 294 -19 2259 237 60 36 chr1 268780983 268781806 -13411858 - L1ME2 LINE L1 -26 6138 5297 314 250 26 0 chr1 268781808 268781884 -13411780 - L1MC4 LINE L1 -1351 6691 6614 1424 167 22 101 chr1 268781887 268782205 -13411459 - AluYb8 SINE Alu -25 293 1 2669 248 65 34 chr1 268782209 268783437 -13410227 - L1ME2 LINE L1 -853 5293 4028 1841 164 27 0 chr1 268783452 268783745 -13409919 - AluJo SINE Alu -6 306 6 1682 238 85 15 chr1 268783750 268784339 -13409325 - L1ME2 LINE L1 -3213 2933 2304 578 208 120 16 chr1 268784351 268784534 -13409130 - L1M4 LINE L1 -3227 2919 2718 2133 94 35 30 chr1 268784991 268785330 -13408334 + THE1B LTR MaLR 1 341 -23 687 313 71 0 chr1 268785591 268785802 -13407862 + MIR SINE MIR 32 257 -5 2265 111 0 3 chr1 268786876 268787182 -13406482 + AluSc SINE Alu 1 305 -4 667 165 122 0 chr1 268787221 268787336 -13406328 + FLAM_C SINE Alu 1 129 -4 442 169 11 0 chr1 268787679 268787768 -13405896 - MER53 DNA DNA 0 189 100 2236 109 0 16 chr1 268788253 268788557 -13405107 - AluSx SINE Alu -13 299 1 711 279 144 31 chr1 268788767 268789162 -13404502 + MLT1H LTR MaLR 40 495 -54 2254 98 10 0 chr1 268789162 268789458 -13404206 + AluSp SINE Alu 9 307 -6 711 279 144 31 chr1 268789458 268789520 -13404144 + MLT1H LTR MaLR 495 549 0 1888 156 49 29 chr1 268789778 268789832 -13403832 + MSTA LTR MaLR 1 52 -376 2721 32 0 0 chr1 268789832 268790141 -13403523 + AluY SINE Alu 1 309 -2 1888 156 49 29 chr1 268790141 268790471 -13403193 + MSTA LTR MaLR 52 393 -35 243 0 0 0 chr1 268790727 268790754 -13402910 + (CA)n Simple_repeat Simple_repeat 1 27 0 4343 191 26 11 chr1 268792148 268793813 -13399851 - L1MB7 LINE L1 -18 6166 4484 317 292 24 21 chr1 268793827 268793940 -13399724 + MIR SINE MIR 73 186 -68 749 194 8 0 chr1 268794736 268794870 -13398794 - FRAM SINE Alu -21 155 21 1812 273 55 22 chr1 268795159 268796036 -13397628 + L1ME2 LINE L1 3045 3950 -2196 1385 207 100 24 chr1 268796054 268796504 -13397160 + L1ME2 LINE L1 4289 4772 -1374 * 1686 216 134 0 chr1 268796502 268797016 -13396648 + L1ME2 LINE L1 5392 5974 -190 348 266 51 102 chr1 268797132 268797388 -13396276 + L1MC4 LINE L1 7799 8041 -1 1519 169 67 10 chr1 268797484 268797874 -13395790 + MER4D LTR ERV1 1 500 -403 1043 299 16 29 chr1 268797985 268798360 -13395304 - LTR16C LTR ERVL -1 490 121 2281 104 3 0 chr1 268799653 268799952 -13393712 + AluSx SINE Alu 1 300 -12 2209 118 0 0 chr1 268799996 268800292 -13393372 + AluSg SINE Alu 1 296 -14 346 225 81 51 chr1 268800317 268800553 -13393111 + L1ME LINE L1 527 769 -5301 1257 294 75 10 chr1 268800656 268801146 -13392518 + L2 LINE L2 2533 3054 -259 570 284 68 17 chr1 268801529 268801765 -13391899 + L2 LINE L2 3045 3292 -21 357 303 160 5 chr1 268801776 268801964 -13391700 + L1ME3 LINE L1 5681 5897 -265 24 85 0 0 chr1 268801996 268802055 -13391609 + AT_rich Low_complexity Low_complexity 1 59 0 1098 237 34 95 chr1 268802378 268802969 -13390695 - L1MC4a LINE L1 -1779 6029 5475 230 374 115 11 chr1 268802993 268803167 -13390497 - L2 LINE L2 -615 2699 2508 437 255 48 19 chr1 268803209 268803417 -13390247 + L1ME4a LINE L1 5712 5925 -196 35933 85 11 8 chr1 268804830 268810955 -13382709 - L1PA6 LINE L1 -1 6153 11 1124 192 156 49 chr1 268811358 268811686 -13381978 + MLT1A1 LTR MaLR 3 365 0 188 276 112 41 chr1 268812076 268812174 -13381490 - MIR SINE MIR -2 260 156 525 152 87 10 chr1 268812174 268812326 -13381338 - L1MC1 LINE L1 -114 6230 6069 757 89 36 0 chr1 268812327 268812439 -13381225 - MSTB1 LTR MaLR -4 428 313 430 248 26 17 chr1 268812450 268812567 -13381097 - MIR SINE MIR -140 122 5 1958 177 34 29 chr1 268812644 268813194 -13380470 - MLT2A2 LTR ERVL 0 554 1 21 71 0 0 chr1 268813274 268813316 -13380348 + AT_rich Low_complexity Low_complexity 1 42 0 5316 161 37 24 chr1 268813505 268813758 -13379906 - L1MC1 LINE L1 0 6333 6085 2417 124 41 33 chr1 268813758 268814177 -13379487 - MSTB LTR MaLR -2 424 3 5316 161 37 24 chr1 268814177 268815162 -13378502 - L1MC1 LINE L1 -248 6085 5083 399 56 0 0 chr1 268815393 268815447 -13378217 + (CA)n Simple_repeat Simple_repeat 1 54 0 2769 128 21 7 chr1 268815710 268816132 -13377532 - MSTA LTR MaLR 0 428 1 1899 163 0 3 chr1 268816319 268816602 -13377062 + AluJo SINE Alu 1 282 -30 201 74 0 0 chr1 268816605 268816632 -13377032 + (TAA)n Simple_repeat Simple_repeat 2 28 0 180 77 0 0 chr1 268816702 268816728 -13376936 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1714 178 3 34 chr1 268816978 268817298 -13376366 - AluJo SINE Alu -2 310 1 190 214 29 86 chr1 268818032 268818102 -13375562 - MIR SINE MIR -101 107 42 472 250 116 0 chr1 268818712 268818824 -13374840 + FLAM_A SINE Alu 1 125 -8 409 294 25 17 chr1 268818824 268818943 -13374721 + MER5A DNA MER1_type 42 161 -28 1620 127 54 0 chr1 268818944 268819220 -13374444 - L1PB4 LINE L1 -84 6072 5782 355 38 38 0 chr1 268819275 268819328 -13374336 + (TA)n Simple_repeat Simple_repeat 2 56 0 250 79 0 0 chr1 268819347 268819385 -13374279 + L1P5 LINE L1 5786 5823 -333 648 212 0 23 chr1 268819427 268819559 -13374105 + AluJo SINE Alu 105 233 -79 3547 153 8 28 chr1 268819562 268820350 -13373314 - L1PB4 LINE L1 -369 5787 4984 1701 184 19 26 chr1 268820350 268820659 -13373005 - AluJb SINE Alu -5 307 1 3547 153 8 28 chr1 268820659 268821033 -13372631 - L1PB4 LINE L1 -1172 4984 4656 180 77 0 0 chr1 268821033 268821059 -13372605 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3547 153 8 28 chr1 268821059 268821142 -13372522 - L1PB4 LINE L1 -1500 4656 4573 279 272 40 8 chr1 268821322 268821447 -13372217 + Zaphod DNA AcHobo 3903 4031 0 2178 121 0 7 chr1 268822332 268822630 -13371034 + AluSx SINE Alu 1 296 -16 6582 128 29 55 chr1 268822653 268823916 -13369748 - Tigger3b DNA MER2_type -2 1229 1 423 0 0 0 chr1 268824029 268824076 -13369588 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 770 167 0 0 chr1 268824368 268824494 -13369170 + AluSg/x SINE Alu 174 299 -13 213 325 59 75 chr1 268824647 268824902 -13368762 - L2 LINE L2 -208 3064 2814 208 204 20 41 chr1 268825433 268825531 -13368133 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 693 165 6 70 chr1 268825553 268825711 -13367953 - MER106B DNA MER1_type -911 148 1 3593 69 8 0 chr1 268825715 268826192 -13367472 + L1PA8 LINE L1 5685 6165 -7 21 0 0 0 chr1 268826492 268826513 -13367151 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr1 268826847 268826878 -13366786 + (T)n Simple_repeat Simple_repeat 1 31 0 2274 97 14 0 chr1 268826971 268827259 -13366405 - AluSc SINE Alu -17 292 1 26 30 0 0 chr1 268827328 268827361 -13366303 + AT_rich Low_complexity Low_complexity 1 33 0 274 297 48 14 chr1 268827511 268827656 -13366008 - L1MC/D LINE L1 -2050 5758 5609 333 0 0 0 chr1 268827761 268827798 -13365866 + (CA)n Simple_repeat Simple_repeat 2 38 0 1600 71 0 5 chr1 268827946 268828156 -13365508 + L1PA5 LINE L1 5940 6148 -6 1841 154 0 18 chr1 268828252 268828537 -13365127 + AluJb SINE Alu 1 280 -32 2233 110 0 0 chr1 268828814 268829104 -13364560 - AluSq SINE Alu -21 292 3 319 251 3 14 chr1 268829747 268829828 -13363836 + MIR SINE MIR 72 152 -67 1775 166 3 17 chr1 268829842 268830133 -13363531 + AluJb SINE Alu 1 289 -23 189 0 0 0 chr1 268830133 268830154 -13363510 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 2180 109 0 0 chr1 268830256 268830539 -13363125 + AluSq SINE Alu 3 285 -28 225 94 0 0 chr1 268830962 268830994 -13362670 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 201 225 0 0 chr1 268830995 268831035 -13362629 - L2 LINE L2 -12 3260 3221 206 0 69 0 chr1 268832930 268832959 -13360705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2288 99 7 0 chr1 268833015 268833319 -13360345 + AluSc SINE Alu 1 306 -3 7623 161 6 1 chr1 268833911 268836079 -13357585 + L1PA13 LINE L1 3969 6158 -5 482 304 96 9 chr1 268836140 268836360 -13357304 - MIR SINE MIR -9 253 15 938 223 105 0 chr1 268836419 268836648 -13357016 - MSTB1 LTR MaLR -3 429 177 1036 183 179 7 chr1 268837355 268837645 -13356019 + MER2 DNA MER2_type 2 341 -3 716 69 20 0 chr1 268838251 268838353 -13355311 - L1PA10 LINE L1 -1 6167 6064 24 0 0 0 chr1 268838632 268838656 -13355008 + AT_rich Low_complexity Low_complexity 1 24 0 422 183 0 0 chr1 268839224 268839295 -13354369 + MER63 DNA MER1_type 681 751 -310 6749 108 16 37 chr1 268839502 268840597 -13353067 - MER11C LTR ERVK 0 1071 1 283 257 0 27 chr1 268840675 268840749 -13352915 - MER63 DNA MER1_type 0 1060 989 228 260 10 73 chr1 268840962 268841058 -13352606 - MIR SINE MIR -65 197 108 7660 223 25 24 chr1 268843726 268844628 -13349036 + L1MC/D LINE L1 3160 4059 -2149 2048 116 4 0 chr1 268844628 268844931 -13348733 + AluSg SINE Alu 3 306 0 7660 223 25 24 chr1 268844931 268846328 -13347336 + L1MC/D LINE L1 4059 5464 -744 4490 144 27 15 chr1 268846325 268847114 -13346550 + L1MC2 LINE L1 5385 6182 -162 * 239 162 0 0 chr1 268847115 268847152 -13346512 + Alu SINE Alu 205 241 -61 391 242 8 8 chr1 268847154 268847286 -13346378 + (TA)n Simple_repeat Simple_repeat 2 133 0 665 192 34 7 chr1 268847286 268847432 -13346232 + L1MC2 LINE L1 6177 6326 -18 322 26 0 0 chr1 268848489 268848527 -13345137 - tRNA-Phe-TTC tRNA tRNA -38 38 1 21 0 0 0 chr1 268848576 268848597 -13345067 + AT_rich Low_complexity Low_complexity 1 21 0 2013 128 3 7 chr1 268851143 268851432 -13342232 - AluSq SINE Alu -18 295 8 201 156 0 0 chr1 268852602 268852634 -13341030 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2098 143 88 15 chr1 268854020 268854418 -13339246 - MSTA LTR MaLR -1 427 1 1661 172 12 30 chr1 268855088 268855419 -13338245 - MER89 LTR ERV1 0 559 235 4924 136 28 54 chr1 268855424 268855614 -13338050 + L1MA4A LINE L1 5366 5559 -744 614 154 112 56 chr1 268855614 268855757 -13337907 - FRAM SINE Alu -15 151 1 4924 136 28 54 chr1 268855757 268856516 -13337148 + L1MA4A LINE L1 5559 6291 -12 797 177 78 16 chr1 268856575 268856767 -13336897 - MER89 LTR ERV1 -355 204 1 211 271 194 58 chr1 268857999 268858427 -13335237 - L2 LINE L2 -809 2505 2020 750 184 0 0 chr1 268858735 268858871 -13334793 - FLAM_C SINE Alu -7 136 1 292 329 30 6 chr1 268859180 268859344 -13334320 - L2 LINE L2 -1824 1490 1323 1111 131 11 28 chr1 268859656 268859832 -13333832 + MSTB1 LTR MaLR 257 429 -3 908 214 41 0 chr1 268859866 268860062 -13333602 - L1MA6 LINE L1 -20 6280 6077 1636 172 55 31 chr1 268860349 268860733 -13332931 - L1MB1 LINE L1 0 5992 5600 923 141 150 3 chr1 268860733 268860923 -13332741 + MSTA LTR MaLR 1 212 -214 3845 181 68 37 chr1 268860925 268861318 -13332346 - L1MB1 LINE L1 -406 5586 5207 1459 203 14 0 chr1 268861318 268861608 -13332056 - AluJo SINE Alu -18 294 1 3845 181 68 37 chr1 268861608 268862612 -13331052 - L1MB1 LINE L1 -785 5207 4139 31568 104 17 58 chr1 268862632 268869042 -13324622 + L1PA7 LINE L1 12 6152 -2 8141 248 58 25 chr1 268869068 268870805 -13322859 - L1MB1 LINE L1 -1823 4147 2469 2064 149 125 8 chr1 268870805 268871188 -13322476 - MSTA LTR MaLR 0 428 1 8141 248 58 25 chr1 268871188 268873781 -13319883 - L1MB1 LINE L1 -3501 2469 1 24 0 0 0 chr1 268874068 268874092 -13319572 + AT_rich Low_complexity Low_complexity 1 24 0 2385 99 0 0 chr1 268874611 268874915 -13318749 - AluSp SINE Alu -9 304 1 195 42 0 0 chr1 268875333 268875357 -13318307 + (GA)n Simple_repeat Simple_repeat 1 24 0 228 136 79 7 chr1 268875381 268875521 -13318143 + (TA)n Simple_repeat Simple_repeat 2 151 0 1491 107 0 0 chr1 268875523 268875729 -13317935 - L1PB1 LINE L1 -152 5999 5794 21 0 0 0 chr1 268875729 268875750 -13317914 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr1 268875916 268875947 -13317717 + AT_rich Low_complexity Low_complexity 1 31 0 431 119 80 0 chr1 268877099 268877417 -13316247 + (TA)n Simple_repeat Simple_repeat 1 343 0 2422 130 5 3 chr1 268877442 268877819 -13315845 + L1PB1 LINE L1 5769 6146 -5 712 304 80 22 chr1 268877934 268878471 -13315193 + L1ME4a LINE L1 5316 5883 -238 22 35 0 0 chr1 268878501 268878530 -13315134 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 268878592 268878615 -13315049 + AT_rich Low_complexity Low_complexity 1 23 0 4124 70 2 5 chr1 268878847 268879403 -13314261 + L1PA7 LINE L1 5601 6154 0 1696 245 86 42 chr1 268880636 268881687 -13311977 + L1M2 LINE L1 1510 2522 -3693 915 218 41 44 chr1 268881673 268883019 -13310645 + L1ME LINE L1 4222 5697 -469 * 423 245 206 49 chr1 268883020 268883224 -13310440 - MLT1E LTR MaLR -355 238 3 536 323 44 28 chr1 268883224 268883475 -13310189 + L2 LINE L2 3027 3281 -32 235 340 71 78 chr1 268883544 268883685 -13309979 - L2 LINE L2 -610 2704 2565 1859 176 0 3 chr1 268884048 268884338 -13309326 - AluJo SINE Alu -23 289 1 715 225 39 127 chr1 268885015 268885299 -13308365 + MIR SINE MIR 1 259 -3 472 278 108 5 chr1 268886048 268886242 -13307422 - MER115 DNA AcHobo -8 685 472 442 272 0 0 chr1 268887533 268887647 -13306017 + L1MD1 LINE L1 17 130 -6410 4166 173 55 2 chr1 268887647 268888476 -13305188 + L1MB7 LINE L1 5173 6061 -123 198 103 0 0 chr1 268888476 268888505 -13305159 + (CAGAA)n Simple_repeat Simple_repeat 2 30 0 4166 173 55 2 chr1 268888505 268888616 -13305048 + L1MB7 LINE L1 6061 6165 -19 1417 328 89 24 chr1 268888635 268889511 -13304153 + L1MD1 LINE L1 110 1119 -5421 1615 242 29 4 chr1 268889515 268890027 -13303637 + L1MD1 LINE L1 2566 3090 -3450 4170 180 69 9 chr1 268890044 268891033 -13302631 + L1MD1 LINE L1 5592 6636 0 2171 57 43 4 chr1 268891668 268891948 -13301716 - AluY SINE Alu -18 293 3 577 115 0 0 chr1 268892609 268892696 -13300968 - L1MA2 LINE L1 -6 6298 6212 418 286 27 0 chr1 268892967 268893079 -13300585 + L2 LINE L2 3158 3272 0 209 306 35 0 chr1 268893065 268893150 -13300514 - L2 LINE L2 -821 2493 2406 * 4155 142 38 22 chr1 268893195 268893951 -13299713 + L1MC1 LINE L1 5555 6322 -11 2044 148 3 3 chr1 268893953 268894264 -13299400 + AluSx SINE Alu 2 312 0 1765 191 0 7 chr1 268894423 268894722 -13298942 + AluJb SINE Alu 13 309 -3 1988 144 76 3 chr1 268894733 268895115 -13298549 + MSTB1 LTR MaLR 5 414 -18 2513 136 43 21 chr1 268895291 268895710 -13297954 + MSTA LTR MaLR 1 428 0 383 261 54 36 chr1 268896068 268896179 -13297485 + L2 LINE L2 3201 3313 0 387 0 0 0 chr1 268896342 268896385 -13297279 + (TG)n Simple_repeat Simple_repeat 2 44 0 1562 151 0 0 chr1 268896730 268896969 -13296695 - MER8 DNA MER2_type 0 239 1 22 0 0 0 chr1 268897013 268897035 -13296629 + AT_rich Low_complexity Low_complexity 1 22 0 364 310 92 49 chr1 268897095 268897462 -13296202 - L1ME3 LINE L1 -296 5866 5481 23 0 0 0 chr1 268897494 268897517 -13296147 + AT_rich Low_complexity Low_complexity 1 23 0 250 255 0 0 chr1 268897787 268897834 -13295830 - Tigger7 DNA MER2_type -1 2586 2540 839 193 120 62 chr1 268897834 268898385 -13295279 - MER4C LTR ERV1 0 695 78 186 43 0 0 chr1 268898385 268898408 -13295256 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 839 193 120 62 chr1 268898408 268898491 -13295173 - MER4C LTR ERV1 -617 78 1 269 191 0 44 chr1 268898492 268898560 -13295104 - Tigger7 DNA MER2_type -45 2542 2478 1116 226 8 4 chr1 268898593 268898828 -13294836 - Tigger7 DNA MER2_type -497 236 1 2129 220 82 77 chr1 268898839 268899635 -13294029 - MER21B LTR ERV1 -63 800 1 2219 126 0 3 chr1 268901075 268901384 -13292280 - AluSx SINE Alu -4 308 1 584 166 29 63 chr1 268902040 268902176 -13291488 - MER53 DNA DNA 0 189 59 1901 106 8 0 chr1 268902176 268902430 -13291234 - AluSg1 SINE Alu -12 297 42 584 166 29 63 chr1 268902430 268902468 -13291196 - MER53 DNA DNA -130 59 21 910 120 0 0 chr1 268902468 268902593 -13291071 - AluSg1 SINE Alu -143 166 42 256 200 0 0 chr1 268902593 268902648 -13291016 - MER53 DNA DNA -131 58 4 295 316 18 18 chr1 268902798 268902912 -13290752 + MIR3 SINE MIR 43 156 -52 629 301 6 17 chr1 268903618 268903791 -13289873 - MER5B DNA MER1_type -6 172 2 422 329 100 9 chr1 268903815 268904146 -13289518 + L2 LINE L2 1471 1831 -1483 22 35 0 0 chr1 268904296 268904325 -13289339 + AT_rich Low_complexity Low_complexity 1 29 0 283 333 121 25 chr1 268904657 268904897 -13288767 + L2 LINE L2 1917 2179 -1135 5231 112 2 1 chr1 268904897 268905684 -13287980 + L1PA16 LINE L1 5370 6157 -9 1929 283 84 35 chr1 268905703 268906568 -13287096 + L2 LINE L2 2169 3080 -233 285 300 25 12 chr1 268906591 268906671 -13286993 + L2 LINE L2 3233 3313 0 2098 206 95 0 chr1 268907540 268907971 -13285693 - ERVL-D LTR ERVL -1112 4542 4071 1433 285 57 10 chr1 268907977 268908482 -13285182 - ERVL-D LTR ERVL -5234 530 2 1372 194 115 31 chr1 268908483 268908865 -13284799 - MLT2D LTR ERVL 0 414 1 285 173 62 0 chr1 268909665 268909746 -13283918 + CT-rich Low_complexity Low_complexity 4 89 0 530 245 123 0 chr1 268909759 268909914 -13283750 - AluJb SINE Alu -2 310 137 185 321 0 0 chr1 268909972 268910028 -13283636 - MIR SINE MIR -56 206 151 1266 283 94 43 chr1 268910492 268910673 -13282991 + L2 LINE L2 2295 2465 -848 2161 109 0 20 chr1 268910673 268910976 -13282688 - AluSx SINE Alu -15 297 1 1266 283 94 43 chr1 268910976 268911692 -13281972 + L2 LINE L2 2465 3310 -3 201 167 0 0 chr1 268912849 268912885 -13280779 + CT-rich Low_complexity Low_complexity 1 36 0 1436 104 5 0 chr1 268913399 268913592 -13280072 - AluSp SINE Alu -119 194 1 510 272 45 68 chr1 268913621 268913930 -13279734 + L2 LINE L2 1749 2050 -1264 799 322 82 52 chr1 268913934 268914462 -13279202 + L2 LINE L2 2770 3313 0 521 283 31 16 chr1 268914637 268914828 -13278836 - MLT1L LTR MaLR -27 588 395 369 314 81 7 chr1 268915193 268915464 -13278200 + HAL1 LINE L1 1476 1766 -741 2172 116 3 7 chr1 268915991 268916301 -13277363 + AluSx SINE Alu 1 309 -3 1481 136 50 23 chr1 268916445 268916746 -13276918 - MER4B-int LTR ERV1 -1100 5658 5350 26906 64 6 9 chr1 268916846 268920632 -13273032 - L1P LINE L1 -1566 4580 809 983 193 36 18 chr1 268920632 268920855 -13272809 - L1MC1 LINE L1 -426 5907 5681 2329 174 30 53 chr1 268920960 268922582 -13271082 + L1MC1 LINE L1 4699 6333 0 2627 178 23 43 chr1 268922627 268923229 -13270435 - L1MA9 LINE L1 -1 6311 5722 2905 143 2 0 chr1 268923331 268924007 -13269657 - L1M2 LINE L1 -528 5763 5087 * 8978 168 19 13 chr1 268923999 268925909 -13267755 + L1M2 LINE L1 3178 5098 -1048 2081 226 31 24 chr1 268926200 268926739 -13266925 + L1MD2 LINE L1 5544 6086 -273 940 193 52 5 chr1 268926742 268926955 -13266709 + L1MD2 LINE L1 6122 6344 -15 561 259 57 31 chr1 268926962 268927155 -13266509 + MIR SINE MIR 65 262 0 388 343 93 0 chr1 268927624 268927764 -13265900 + L2 LINE L2 3112 3264 -8 461 163 92 10 chr1 268928731 268928829 -13264835 - Tigger7 DNA MER2_type 0 2487 2382 1326 191 0 0 chr1 268928830 268929060 -13264604 - Tigger7 DNA MER2_type -499 234 5 269 257 248 0 chr1 268929103 268929208 -13264456 - L2 LINE L2 -4 3309 3179 244 249 217 72 chr1 268929494 268929715 -13263949 + L2 LINE L2 2985 3237 -35 860 178 0 26 chr1 268931556 268931708 -13261956 + FRAM SINE Alu 1 145 -31 2167 99 62 34 chr1 268931767 268932121 -13261543 - THE1B LTR MaLR 0 364 1 850 235 0 12 chr1 268932673 268932839 -13260825 - FRAM SINE Alu -2 164 1 287 363 32 16 chr1 268933478 268933668 -13259996 - MIR3 SINE MIR -1 207 15 234 231 31 15 chr1 268933736 268933801 -13259863 + MLT1I LTR MaLR 57 122 -287 520 140 0 11 chr1 268933896 268933989 -13259675 - L1MA5A LINE L1 -3 6294 6203 398 264 106 48 chr1 268934213 268934421 -13259243 - MIR SINE MIR -40 222 3 464 221 105 102 chr1 268935728 268935798 -13257866 + L1MC4 LINE L1 7689 7757 -285 1666 112 121 0 chr1 268935798 268936047 -13257617 + AluSq SINE Alu 1 279 -34 435 38 0 0 chr1 268936047 268936100 -13257564 + (TC)n Simple_repeat Simple_repeat 2 54 0 464 221 105 102 chr1 268936100 268936381 -13257283 + L1MC4 LINE L1 7756 8042 0 2587 68 0 3 chr1 268938055 268938365 -13255299 - AluY SINE Alu -2 309 1 2289 229 60 8 chr1 268940107 268940640 -13253024 + MLT1E LTR MaLR 33 593 0 4981 139 19 10 chr1 268941258 268942033 -13251631 - LTR39 LTR ERV1 0 783 2 619 289 9 18 chr1 268942904 268943122 -13250542 + MIR SINE MIR 3 218 -44 434 324 33 23 chr1 268943848 268944147 -13249517 - L1MCc LINE L1 -4955 1468 1167 297 280 27 0 chr1 268945280 268945355 -13248309 - MER2 DNA MER2_type 0 345 269 406 91 0 52 chr1 268945395 268945472 -13248192 + L1PA16 LINE L1 6094 6166 0 892 145 62 62 chr1 268945493 268945686 -13247978 - MER2 DNA MER2_type -138 207 15 233 363 73 0 chr1 268945847 268945971 -13247693 - L2 LINE L2 -4 3268 3136 235 328 49 59 chr1 268946093 268946127 -13247537 - L2 LINE L2 -213 3059 3026 2002 145 139 13 chr1 268946127 268946507 -13247157 + MSTA LTR MaLR 1 428 0 235 328 49 59 chr1 268946507 268946676 -13246988 - L2 LINE L2 -246 3026 2858 318 296 136 18 chr1 268946697 268946866 -13246798 + L2 LINE L2 2587 2775 -539 2621 111 16 8 chr1 268946869 268947240 -13246424 - THE1C LTR MaLR 0 375 2 6026 112 11 9 chr1 268947241 268948082 -13245582 - THE1C-int LTR MaLR 0 1580 739 347 312 78 0 chr1 268948469 268948610 -13245054 + MIR3 SINE MIR 34 185 -23 477 324 76 17 chr1 268948664 268948902 -13244762 + MIR SINE MIR 1 252 -10 25 0 0 0 chr1 268949834 268949859 -13243805 + AT_rich Low_complexity Low_complexity 1 25 0 1803 192 15 3 chr1 268949861 268950200 -13243464 - MER2 DNA MER2_type 0 344 2 301 332 79 20 chr1 268950473 268950675 -13242989 - MIR SINE MIR 0 262 49 3300 177 36 13 chr1 268950694 268951366 -13242298 - L1MA9 LINE L1 -313 5999 5313 2388 108 0 0 chr1 268951522 268951828 -13241836 - AluSx SINE Alu -6 306 1 858 217 44 0 chr1 268952363 268952543 -13241121 + MER3 DNA MER1_type 2 189 -20 220 333 53 18 chr1 268952671 268952785 -13240879 + MIR SINE MIR 95 212 -50 265 349 57 0 chr1 268954739 268954845 -13238819 - MIR SINE MIR -55 153 42 2238 104 0 25 chr1 268954901 268955254 -13238410 - AluSx SINE Alu 0 345 1 1585 98 5 0 chr1 268957091 268957296 -13236368 + AluSq SINE Alu 1 206 -107 238 257 27 27 chr1 268957732 268957806 -13235858 + L2 LINE L2 3199 3272 0 755 212 147 27 chr1 268959649 268959833 -13233831 + MER20 DNA MER1_type 2 207 -12 1358 113 0 0 chr1 268959934 268960119 -13233545 + AluY SINE Alu 126 310 -1 915 125 0 0 chr1 268960119 268960255 -13233409 + L1M1 LINE L1 5606 5741 -559 268 188 0 21 chr1 268960436 268960484 -13233180 + MLT1J2 LTR MaLR 120 166 -284 248 108 0 0 chr1 268960512 268960549 -13233115 + (GA)n Simple_repeat Simple_repeat 2 38 0 5318 152 11 1 chr1 268962198 268963231 -13230433 + L1PB4 LINE L1 5116 6160 0 564 279 25 41 chr1 268964116 268964360 -13229304 - L1ME LINE L1 -345 5776 5537 281 321 37 0 chr1 268964883 268964992 -13228672 + L2 LINE L2 3200 3312 -1 988 144 19 0 chr1 268965201 268965361 -13228303 - L1MA10 LINE L1 -2 6332 6170 2589 58 0 6 chr1 268965371 268965682 -13227982 - AluSg SINE Alu 0 310 2 2174 103 8 64 chr1 268965797 268965829 -13227835 - L1MB1 LINE L1 -28 6161 6129 1651 180 37 4 chr1 268965829 268966133 -13227531 - AluJb SINE Alu 0 315 3 2174 103 8 64 chr1 268966133 268966459 -13227205 - L1MB1 LINE L1 -60 6129 5822 302 182 18 0 chr1 268966460 268966515 -13227149 + L1M2 LINE L1 5710 5765 -547 279 270 101 20 chr1 268966515 268966663 -13227001 - MARNA DNA Mariner -241 345 186 2110 141 71 0 chr1 268968144 268968484 -13225180 + THE1B LTR MaLR 1 364 0 32 67 0 0 chr1 268969087 268969147 -13224517 + AT_rich Low_complexity Low_complexity 1 60 0 294 276 26 0 chr1 268969451 268969527 -13224137 + MIR3 SINE MIR 83 160 -48 321 260 31 0 chr1 268969638 268969734 -13223930 - Charlie8 DNA MER1_type -2248 169 71 604 65 0 0 chr1 268969954 268970031 -13223633 + Alu SINE Alu 220 296 -14 2100 128 3 3 chr1 268970200 268970496 -13223168 + AluSx SINE Alu 1 296 -16 232 297 13 65 chr1 268970766 268970921 -13222743 + L1ME4a LINE L1 5964 6110 -11 223 184 20 20 chr1 268970983 268971032 -13222632 + CT-rich Low_complexity Low_complexity 1 49 0 361 300 8 8 chr1 268971896 268972026 -13221638 + MER5A DNA MER1_type 3 132 -57 243 344 32 13 chr1 268971927 268972081 -13221583 - MER5A DNA MER1_type -22 167 11 * 750 72 10 0 chr1 268972631 268972728 -13220936 + AluS SINE Alu 2 99 -214 1720 251 84 25 chr1 268973003 268973564 -13220100 - L1MCc LINE L1 -5813 610 17 694 209 0 11 chr1 268973995 268974177 -13219487 + CT-rich Low_complexity Low_complexity 1 180 0 1866 168 3 10 chr1 268974180 268974477 -13219187 - AluJb SINE Alu -17 295 1 766 181 0 0 chr1 268976218 268976351 -13217313 + MLT1B LTR MaLR 256 388 -2 2286 83 3 20 chr1 268976879 268977181 -13216483 + AluSg1 SINE Alu 1 297 -12 185 358 0 0 chr1 268977607 268977674 -13215990 + MIR SINE MIR 1 67 -195 662 252 176 0 chr1 268977871 268978093 -13215571 + MIR SINE MIR 1 261 -1 610 125 5 171 chr1 268979071 268979114 -13214550 - L1MC/D LINE L1 -925 5434 5385 1838 156 17 7 chr1 268979114 268979409 -13214255 - AluSx SINE Alu -14 298 1 610 125 5 171 chr1 268979409 268979552 -13214112 - L1MC/D LINE L1 -974 5385 5286 2004 105 11 0 chr1 268979552 268979829 -13213835 - AluSp SINE Alu -4 309 30 610 125 5 171 chr1 268979829 268979857 -13213807 - L1MC/D LINE L1 -1073 5286 5255 228 295 19 29 chr1 268979904 268980009 -13213655 - L2 LINE L2 -34 3279 3176 365 225 97 93 chr1 268981285 268981417 -13212247 + MLT1H1 LTR MaLR 357 496 -59 2076 140 0 0 chr1 268981417 268981710 -13211954 - AluSq SINE Alu -20 293 1 365 225 97 93 chr1 268981710 268981771 -13211893 + MLT1H1 LTR MaLR 496 555 0 2335 107 0 0 chr1 268983057 268983366 -13210298 + AluSx SINE Alu 1 309 -3 304 87 0 2 chr1 268983422 268983479 -13210185 + AluSp/q SINE Alu 251 300 -3 238 329 24 0 chr1 268983911 268983993 -13209671 - L3 LINE CR1 -155 1422 1339 1970 126 0 0 chr1 268984101 268984371 -13209293 + AluSx SINE Alu 1 270 -42 313 296 42 16 chr1 268984486 268984675 -13208989 + L1ME LINE L1 5640 5833 -329 201 241 19 37 chr1 268985591 268985645 -13208019 + MER5B DNA MER1_type 91 143 -35 263 289 91 64 chr1 268986237 268986413 -13207251 + MIR3 SINE MIR 18 198 -10 215 196 0 0 chr1 268987042 268987088 -13206576 - L2 LINE L2 0 3313 3268 * 295 246 189 0 chr1 268987087 268987209 -13206455 - L2 LINE L2 -423 2891 2747 621 276 130 41 chr1 268987268 268987324 -13206340 - L2 LINE L2 -64 3249 3199 654 206 58 54 chr1 268987324 268987547 -13206117 - MER58A DNA MER1_type 0 224 1 621 276 130 41 chr1 268987547 268987954 -13205710 - L2 LINE L2 -114 3199 2747 324 83 0 0 chr1 269038584 269038632 -13155032 + (TG)n Simple_repeat Simple_repeat 1 48 0 256 279 0 9 chr1 269038650 269038761 -13154903 + GA-rich Low_complexity Low_complexity 2 111 0 260 277 128 21 chr1 269039019 269039207 -13154457 - L2 LINE L2 -358 2914 2709 602 246 82 11 chr1 269039859 269040042 -13153622 - Charlie4 DNA MER1_type 0 1961 1766 360 163 122 32 chr1 269040042 269040195 -13153469 - L1MA2 LINE L1 -294 6010 5832 392 134 52 0 chr1 269040313 269040447 -13153217 + (TA)n Simple_repeat Simple_repeat 1 141 0 252 241 24 48 chr1 269041230 269041313 -13152351 - L2 LINE L2 0 3313 3233 24 32 0 0 chr1 269042108 269042139 -13151525 + AT_rich Low_complexity Low_complexity 1 31 0 981 181 0 0 chr1 269042139 269042288 -13151376 - AluJ SINE Alu -27 285 137 2061 253 98 25 chr1 269044213 269045102 -13148562 + L1PBa LINE L1 2754 3670 -3895 527 239 36 14 chr1 269045100 269045238 -13148426 - L1 LINE L1 -3563 2583 2443 * 881 167 72 0 chr1 269045232 269045412 -13148252 + L1 LINE L1 2262 2454 -3692 2840 165 18 2 chr1 269045413 269045916 -13147748 - MER6 DNA MER2_type 0 865 355 295 267 138 0 chr1 269046697 269046813 -13146851 + L2 LINE L2 3182 3313 0 421 95 63 0 chr1 269047065 269047128 -13146536 + MSTC LTR MaLR 2 68 -360 752 208 0 0 chr1 269047815 269047945 -13145719 - AluJ SINE Alu -171 131 2 3396 166 33 6 chr1 269048211 269049089 -13144575 + L1P4 LINE L1 4615 5516 -649 325 113 56 0 chr1 269049193 269049264 -13144400 + L1PA15 LINE L1 6091 6165 0 1907 172 61 32 chr1 269049264 269049641 -13144023 + MSTC LTR MaLR 41 428 0 332 306 36 26 chr1 269049644 269049837 -13143827 + L2 LINE L2 2716 2910 -404 4986 182 50 17 chr1 269049849 269050900 -13142764 - L1MC3 LINE L1 0 7785 6701 2513 93 60 6 chr1 269051298 269051651 -13142013 - MLT2A1 LTR ERVL -72 372 1 1064 262 7 7 chr1 269051684 269051982 -13141682 - L1M4 LINE L1 -3355 3602 3305 1807 169 0 18 chr1 269052026 269052339 -13141325 - AluJb SINE Alu 0 312 5 2416 253 97 50 chr1 269052605 269054263 -13139401 - L1M4 LINE L1 -4543 2416 838 2202 81 10 20 chr1 269054263 269054561 -13139103 - AluY SINE Alu -16 295 1 2416 253 97 50 chr1 269054561 269054712 -13138952 - L1M4 LINE L1 -6121 838 696 5212 73 6 6 chr1 269054712 269055372 -13138292 - PABL_A LTR ERV1 0 660 1 2416 253 97 50 chr1 269055372 269055657 -13138007 - L1M4 LINE L1 -6263 696 11 2037 120 7 7 chr1 269056725 269057017 -13136647 - AluSc SINE Alu -17 292 1 427 197 4 57 chr1 269057770 269058059 -13135605 + (TGG)n Simple_repeat Simple_repeat 1 273 0 492 158 11 63 chr1 269058070 269058260 -13135404 + (TGG)n Simple_repeat Simple_repeat 1 180 0 194 196 0 56 chr1 269058295 269058402 -13135262 + (TGG)n Simple_repeat Simple_repeat 2 102 0 358 179 0 92 chr1 269058457 269058641 -13135023 + (TGG)n Simple_repeat Simple_repeat 1 167 0 341 199 0 75 chr1 269058673 269058859 -13134805 + (TGG)n Simple_repeat Simple_repeat 1 172 0 2396 78 10 0 chr1 269059162 269059468 -13134196 + AluSc SINE Alu 1 309 0 192 368 11 11 chr1 269060094 269060181 -13133483 - L3 LINE CR1 -51 1526 1440 276 355 15 35 chr1 269060774 269060971 -13132693 + L2 LINE L2 2826 3018 -254 306 229 133 0 chr1 269061376 269061459 -13132205 + MIR SINE MIR 166 259 -3 201 39 0 0 chr1 269062168 269062194 -13131470 + (TG)n Simple_repeat Simple_repeat 2 27 0 1031 301 66 3 chr1 269063568 269063934 -13129730 + MLT1I LTR MaLR 10 398 -11 2299 87 13 0 chr1 269064679 269064977 -13128687 + AluY SINE Alu 1 302 -9 788 349 28 9 chr1 269065592 269065910 -13127754 + MLT1I LTR MaLR 37 360 -49 1009 240 96 60 chr1 269065964 269066180 -13127484 + MLT1L LTR MaLR 107 314 -301 1591 210 43 46 chr1 269066180 269066571 -13127093 - MLT1B LTR MaLR 0 390 1 1009 240 96 60 chr1 269066571 269066800 -13126864 + MLT1L LTR MaLR 314 568 -47 260 210 57 121 chr1 269067063 269067220 -13126444 - MLT1H LTR MaLR -400 149 3 446 181 0 0 chr1 269067234 269067306 -13126358 - MLT1B LTR MaLR -50 340 269 254 294 23 18 chr1 269067435 269067566 -13126098 + MIR SINE MIR 16 145 -63 513 116 39 18 chr1 269068012 269068300 -13125364 + (TA)n Simple_repeat Simple_repeat 1 294 0 395 130 40 28 chr1 269068318 269068495 -13125169 + (TA)n Simple_repeat Simple_repeat 2 180 0 2324 75 0 0 chr1 269068848 269069156 -13124508 - AluY SINE Alu 0 308 1 606 229 59 0 chr1 269070164 269070317 -13123347 + MER5A DNA MER1_type 1 162 -27 * 612 291 6 0 chr1 269070314 269070472 -13123192 - MER5B DNA MER1_type -19 159 1 1722 117 110 0 chr1 269070733 269071015 -13122649 + L1MA5A LINE L1 5969 6281 -16 1972 123 25 0 chr1 269071329 269071605 -13122059 - AluSx SINE Alu -19 293 11 2114 153 21 0 chr1 269071644 269071978 -13121686 - MER7A DNA MER2_type -7 339 1 479 262 38 13 chr1 269071978 269072149 -13121515 - L1MD3 LINE L1 -14 7947 7621 853 270 12 16 chr1 269072323 269072575 -13121089 - MIR SINE MIR -3 259 9 539 284 32 21 chr1 269073500 269073690 -13119974 - MIR SINE MIR 0 262 71 1114 130 0 0 chr1 269074616 269074770 -13118894 + FRAM SINE Alu 13 166 -10 220 375 0 19 chr1 269075783 269075887 -13117777 + MER5A DNA MER1_type 45 146 -43 2465 116 5 27 chr1 269076062 269076434 -13117230 + THE1B LTR MaLR 1 364 0 291 247 82 0 chr1 269076639 269076724 -13116940 - MER110 LTR ERV1 -44 447 356 237 348 43 0 chr1 269077164 269077279 -13116385 - MARNA DNA Mariner -410 176 57 528 182 110 7 chr1 269077562 269077716 -13115948 - L1MC1 LINE L1 -16 6317 6148 306 214 0 0 chr1 269078460 269078516 -13115148 + L2 LINE L2 3257 3312 -1 46 0 0 0 chr1 269079136 269079182 -13114482 + AT_rich Low_complexity Low_complexity 1 46 0 2248 99 7 3 chr1 269079274 269079577 -13114087 - AluSq SINE Alu -7 306 3 1677 148 19 61 chr1 269080045 269080356 -13113308 + AluJb SINE Alu 1 298 -14 2205 66 6 72 chr1 269080543 269080862 -13112802 - AluY SINE Alu -13 298 1 663 137 0 174 chr1 269080911 269081072 -13112592 + FLAM_A SINE Alu 1 133 0 2230 111 3 0 chr1 269081575 269081872 -13111792 + AluSq SINE Alu 7 304 -9 963 207 24 39 chr1 269081952 269082160 -13111504 + MER63A DNA MER1_type 6 210 0 886 151 198 28 chr1 269083571 269083783 -13109881 - L1MC4 LINE L1 0 8042 7795 956 216 77 20 chr1 269083784 269084222 -13109442 - MER4C LTR ERV1 0 465 76 297 182 0 36 chr1 269084217 269084272 -13109392 - MER21B LTR ERV1 -792 71 19 * 341 149 19 131 chr1 269084270 269084377 -13109287 - MER21B LTR ERV1 -757 106 12 1136 157 11 113 chr1 269084406 269084484 -13109180 - L1MC4 LINE L1 -1024 7018 6934 2256 105 0 7 chr1 269084484 269084800 -13108864 - AluSx SINE Alu 0 312 1 1136 157 11 113 chr1 269084800 269084995 -13108669 - L1MC4 LINE L1 -1108 6934 6773 2223 109 3 3 chr1 269085296 269085589 -13108075 + AluSx SINE Alu 1 293 -19 2445 77 0 0 chr1 269085591 269085890 -13107774 + AluY SINE Alu 1 299 -12 279 0 0 0 chr1 269085893 269085899 -13107765 + (TG)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr1 269085899 269085930 -13107734 + (TG)n Simple_repeat Simple_repeat 2 32 0 428 273 8 8 chr1 269086387 269086519 -13107145 + MER58C DNA MER1_type 1 132 -83 339 234 0 26 chr1 269086537 269086614 -13107050 + MER58C DNA MER1_type 138 212 -3 492 198 50 10 chr1 269086663 269086791 -13106873 - MIR SINE MIR -61 147 26 243 88 0 0 chr1 269086837 269086871 -13106793 + (T)n Simple_repeat Simple_repeat 1 34 0 2501 56 0 7 chr1 269089105 269089409 -13104255 - AluY SINE Alu -9 302 1 5361 58 0 6 chr1 269089535 269090168 -13103496 - L1PA6 LINE L1 0 6154 5526 4961 214 36 5 chr1 269090426 269091298 -13102366 - L1PA8 LINE L1 -6 6166 5268 1843 158 0 27 chr1 269091352 269091665 -13101999 - AluJo SINE Alu 0 305 1 1427 182 0 4 chr1 269092532 269092768 -13100896 + AluJo SINE Alu 1 235 -77 477 262 73 9 chr1 269093184 269093395 -13100269 - MLT1I LTR MaLR 0 409 86 196 248 14 128 chr1 269093892 269094033 -13099631 + MIR SINE MIR 67 191 -71 2248 198 84 30 chr1 269094237 269094424 -13099240 - L1MD2 LINE L1 0 6359 6183 189 0 0 0 chr1 269094424 269094445 -13099219 + (TG)n Simple_repeat Simple_repeat 2 22 0 2248 198 84 30 chr1 269094445 269094631 -13099033 - L1MD2 LINE L1 -176 6183 6008 1952 156 0 19 chr1 269094631 269094945 -13098719 - AluJo SINE Alu 0 312 5 2248 198 84 30 chr1 269094945 269095095 -13098569 - L1MD2 LINE L1 -351 6008 5807 719 196 50 15 chr1 269097100 269097285 -13096379 + L1ME LINE L1 5297 5494 -657 * 1100 199 38 29 chr1 269097273 269097589 -13096075 + L1M4 LINE L1 4369 4687 -1459 180 0 0 0 chr1 269097689 269097709 -13095955 + (C)n Simple_repeat Simple_repeat 1 20 0 554 286 139 55 chr1 269098323 269098725 -13094939 + MLT1H LTR MaLR 114 549 0 355 75 0 3 chr1 269099303 269099357 -13094307 - FRAM/FAM SINE Alu -116 50 5 333 239 92 18 chr1 269099532 269099641 -13094023 - L2 LINE L2 -482 2832 2716 570 75 42 8 chr1 269099655 269099775 -13093889 + (TA)n Simple_repeat Simple_repeat 1 124 0 273 145 23 30 chr1 269099796 269099927 -13093737 + (TTATA)n Simple_repeat Simple_repeat 5 134 0 * 312 113 83 12 chr1 269099900 269100068 -13093596 + (TA)n Simple_repeat Simple_repeat 1 180 0 2102 125 3 3 chr1 269100077 269100366 -13093298 - AluSc SINE Alu -20 289 1 216 323 0 0 chr1 269100368 269100430 -13093234 - L2 LINE L2 -601 2713 2652 231 294 82 12 chr1 269101701 269101786 -13091878 - MIR3 SINE MIR -6 202 112 266 342 27 9 chr1 269102048 269102159 -13091505 - L2 LINE L2 -1 3312 3200 983 297 101 18 chr1 269103171 269103862 -13089802 - L2 LINE L2 -1 3312 2548 1624 200 3 7 chr1 269103948 269104253 -13089411 - AluJo SINE Alu -8 304 1 455 189 11 0 chr1 269104665 269104755 -13088909 - L1MB2 LINE L1 -5 6166 6076 2557 99 88 48 chr1 269106495 269106937 -13086727 + MER4C LTR ERV1 6 465 0 837 134 0 75 chr1 269107139 269107273 -13086391 + FLAM_C SINE Alu 1 124 -19 2245 105 3 0 chr1 269107294 269107590 -13086074 - AluSx SINE Alu -15 297 1 448 155 14 0 chr1 269107749 269107820 -13085844 - THE1C LTR MaLR 0 375 304 1070 9 0 0 chr1 269107924 269108040 -13085624 - AluYb8 SINE Alu -202 116 1 1902 136 19 19 chr1 269108040 269108356 -13085308 - THE1C LTR MaLR -59 316 1 800 331 41 53 chr1 269108583 269109439 -13084225 + L2 LINE L2 1328 2173 -1141 2048 211 94 41 chr1 269109670 269110592 -13083072 + L1MB7 LINE L1 4601 5586 -598 1221 248 16 91 chr1 269110592 269111032 -13082632 + MER21B LTR ERV1 1 407 -456 2593 175 40 63 chr1 269111068 269111669 -13081995 + L1MB7 LINE L1 5582 6168 -16 1867 102 24 102 chr1 269112472 269112805 -13080859 - AluYb8 SINE Alu -11 307 1 2087 124 84 35 chr1 269113355 269113702 -13079962 - THE1B LTR MaLR 0 364 1 2458 79 0 13 chr1 269114572 269114888 -13078776 - AluSp SINE Alu -1 312 1 279 0 0 0 chr1 269114970 269115001 -13078663 + (CA)n Simple_repeat Simple_repeat 2 32 0 1036 184 18 2 chr1 269115694 269115908 -13077756 + L1MB7 LINE L1 5804 6032 -138 252 209 90 15 chr1 269116682 269116749 -13076915 - MER116 DNA Mariner 0 80 9 206 383 22 11 chr1 269116989 269117169 -13076495 - L2 LINE L2 -404 2910 2729 658 306 94 32 chr1 269118345 269118859 -13074805 + L2 LINE L2 2657 3250 -63 501 255 21 21 chr1 269118959 269119104 -13074560 + L2 LINE L2 3156 3300 -13 2161 93 29 0 chr1 269119172 269119450 -13074214 - AluSx SINE Alu -26 286 1 1939 165 0 0 chr1 269119701 269120004 -13073660 - AluSx SINE Alu -9 303 1 2535 207 21 21 chr1 269121296 269121807 -13071857 - LTR31 LTR ERV1 0 619 109 1956 148 3 14 chr1 269123522 269123819 -13069845 + AluJo SINE Alu 1 294 -18 256 300 73 18 chr1 269123945 269124055 -13069609 + MIR SINE MIR 26 141 -67 386 308 108 10 chr1 269125799 269126066 -13067598 - ERVL LTR ERVL -149 5336 5124 750 301 152 26 chr1 269126077 269126419 -13067245 - L2 LINE L2 -1988 1326 942 909 234 36 9 chr1 269126633 269126855 -13066809 + MIR SINE MIR 35 262 0 184 346 30 20 chr1 269127505 269127606 -13066058 - L2 LINE L2 -360 2912 2811 230 257 0 71 chr1 269127665 269127735 -13065929 - L2 LINE L2 -642 2672 2608 1016 76 0 122 chr1 269127758 269127826 -13065838 - L1P5 LINE L1 -494 5660 5585 2348 99 3 0 chr1 269127826 269128129 -13065535 - AluSp SINE Alu -7 306 3 1016 76 0 122 chr1 269128129 269128232 -13065432 - L1P5 LINE L1 -569 5585 5510 450 73 15 0 chr1 269128232 269128292 -13065372 + L1PB3 LINE L1 6085 6153 -1 1939 137 33 113 chr1 269128827 269129251 -13064413 + MLT2D LTR ERVL 25 414 0 2098 146 42 78 chr1 269131723 269132070 -13061594 + MLT2D LTR ERVL 4 335 -79 207 69 0 0 chr1 269132070 269132099 -13061565 + (TCTCTG)n Simple_repeat Simple_repeat 2 30 0 2098 146 42 78 chr1 269132099 269132177 -13061487 + MLT2D LTR ERVL 335 414 0 309 301 182 15 chr1 269132177 269132380 -13061284 - L3 LINE CR1 -25 1552 1316 181 238 98 74 chr1 269133045 269133167 -13060497 + L2 LINE L2 375 499 -2815 1951 197 100 17 chr1 269133222 269133643 -13060021 - MER82 DNA MER2_type 0 653 198 587 53 0 13 chr1 269133647 269133723 -13059941 - MADE1 DNA Mariner -5 75 1 2459 72 0 3 chr1 269133733 269134037 -13059627 - AluY SINE Alu -8 303 1 1085 166 28 0 chr1 269134039 269134220 -13059444 - MER82 DNA MER2_type -463 190 5 333 254 42 0 chr1 269134292 269134363 -13059301 - MER82 DNA MER2_type -579 74 1 350 308 47 35 chr1 269134399 269134568 -13059096 - MIR SINE MIR -90 172 2 616 255 76 11 chr1 269134641 269134825 -13058839 - Charlie4 DNA MER1_type 0 1961 1766 12418 162 31 30 chr1 269134832 269136105 -13057559 - L1MA7 LINE L1 -297 5994 4724 2217 120 0 7 chr1 269136105 269136406 -13057258 - AluSx SINE Alu -13 299 1 12418 162 31 30 chr1 269136406 269138650 -13055014 - L1MA7 LINE L1 -1567 4724 2472 3873 199 22 62 chr1 269138650 269139660 -13054004 + LTR5 LTR ERVK 1 969 0 12418 162 31 30 chr1 269139660 269139680 -13053984 - L1MA7 LINE L1 -3819 2472 2454 2090 204 5 10 chr1 269139680 269140073 -13053591 + MER6 DNA MER2_type 1 391 -474 272 164 0 18 chr1 269140712 269140767 -13052897 + MER116 DNA Mariner 1 54 -26 798 193 0 0 chr1 269141631 269141776 -13051888 - FRAM SINE Alu -30 146 2 609 287 48 39 chr1 269142002 269142416 -13051248 - HAL1 LINE L1 -40 2467 2050 22 35 0 0 chr1 269142419 269142448 -13051216 + AT_rich Low_complexity Low_complexity 1 29 0 5883 155 22 14 chr1 269142448 269144561 -13049103 - L1PB1 LINE L1 -9 6142 4011 1982 122 28 10 chr1 269144561 269144883 -13048781 - AluSx SINE Alu 0 312 1 5883 155 22 14 chr1 269144883 269144914 -13048750 - L1PB1 LINE L1 -2140 4011 3982 3712 269 102 35 chr1 269144924 269146148 -13047516 - HAL1 LINE L1 -440 2067 685 1542 188 50 11 chr1 269146148 269146425 -13047239 - AluJo SINE Alu -24 288 1 3712 269 102 35 chr1 269146425 269146966 -13046698 - HAL1 LINE L1 -1822 685 182 1386 271 147 76 chr1 269147057 269147111 -13046553 - L2 LINE L2 0 3313 3264 2325 158 30 23 chr1 269147111 269147540 -13046124 - MSTB1 LTR MaLR 0 432 1 1386 271 147 76 chr1 269147540 269147993 -13045671 - L2 LINE L2 -49 3264 2845 207 88 0 0 chr1 269147993 269148027 -13045637 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5309 31 7 0 chr1 269148027 269148646 -13045018 - L1PA3 LINE L1 -5 6150 5528 532 0 0 0 chr1 269148646 269148712 -13044952 + L1P LINE L1 5338 5403 -752 1386 271 147 76 chr1 269148712 269149371 -13044293 - L2 LINE L2 -467 2846 1992 2521 178 249 69 chr1 269149702 269150567 -13043097 - LTR28 LTR ERV1 0 1020 1 542 235 73 49 chr1 269151231 269151548 -13042116 - MLT1J2 LTR MaLR -23 427 72 249 275 32 53 chr1 269152851 269153040 -13040624 - HAL1 LINE L1 -5 2502 2318 1652 190 83 7 chr1 269153536 269153967 -13039697 - Charlie1b DNA MER1_type -23 500 37 1856 141 108 47 chr1 269154215 269154641 -13039023 + MSTB2 LTR MaLR 1 452 -5 438 294 58 15 chr1 269154779 269155057 -13038607 - L1MC/D LINE L1 -559 5603 5302 333 265 93 84 chr1 269155171 269155386 -13038278 + MIR SINE MIR 12 228 -34 739 268 39 24 chr1 269155634 269155888 -13037776 - MIR SINE MIR 0 262 5 462 289 103 34 chr1 269156272 269157030 -13036634 - L1ME LINE L1 -361 5803 4997 301 330 62 28 chr1 269157207 269157383 -13036281 - L1ME LINE L1 -1369 4777 4596 244 224 0 0 chr1 269157436 269157494 -13036170 - L1ME LINE L1 -1602 4544 4487 1338 194 142 70 chr1 269157504 269157954 -13035710 + MLT2B1 LTR ERVL 1 490 -30 276 100 0 0 chr1 269157954 269157994 -13035670 + (CA)n Simple_repeat Simple_repeat 1 40 0 1338 194 142 70 chr1 269157994 269158028 -13035636 + MLT2B1 LTR ERVL 490 520 0 3281 204 27 138 chr1 269158041 269159499 -13034165 + MLT1B-int LTR MaLR 75 1370 -1 235 247 0 37 chr1 269159547 269159628 -13034036 + MLT1B LTR MaLR 95 172 -202 291 106 45 0 chr1 269159632 269159698 -13033966 + CT-rich Low_complexity Low_complexity 1 69 0 891 203 36 0 chr1 269159713 269159905 -13033759 + MLT1B LTR MaLR 192 390 0 207 0 0 0 chr1 269159929 269159952 -13033712 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 38793 65 4 4 chr1 269159952 269166084 -13027580 - L1PA5 LINE L1 -12 6142 11 21 36 0 0 chr1 269166173 269166201 -13027463 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1 269166549 269166577 -13027087 + AT_rich Low_complexity Low_complexity 1 28 0 1448 174 34 6 chr1 269166657 269166978 -13026686 - L1MB8 LINE L1 -1 6177 5848 4474 273 72 31 chr1 269166979 269168013 -13025651 - L1 LINE L1 -1007 5139 4149 2065 142 0 3 chr1 269168013 269168309 -13025355 - AluSx SINE Alu -17 295 1 4474 273 72 31 chr1 269168309 269168640 -13025024 - L1 LINE L1 -1997 4149 3833 1858 180 3 16 chr1 269168640 269168956 -13024708 - AluJb SINE Alu 0 312 1 4474 273 72 31 chr1 269168956 269169824 -13023840 - L1 LINE L1 -2313 3833 2813 303 82 0 49 chr1 269169835 269169896 -13023768 - MLT2A2 LTR ERVL 0 453 396 1302 257 75 13 chr1 269170057 269170615 -13023049 + L1ME3A LINE L1 4877 5399 -771 2190 76 7 23 chr1 269170615 269170918 -13022746 + AluY SINE Alu 1 298 -13 1302 257 75 13 chr1 269170918 269171446 -13022218 + L1ME3A LINE L1 5399 6055 -115 373 286 121 20 chr1 269172622 269172821 -13020843 - L1MB8 LINE L1 -445 5676 5458 304 259 78 0 chr1 269172873 269172989 -13020675 - L1MB8 LINE L1 -795 5389 5265 909 255 56 5 chr1 269173146 269173362 -13020302 - MIR SINE MIR 0 262 36 489 306 38 12 chr1 269174379 269174539 -13019125 - L2 LINE L2 -1 3312 3149 304 251 40 11 chr1 269174613 269174788 -13018876 + (TA)n Simple_repeat Simple_repeat 1 180 0 454 253 7 75 chr1 269174855 269174969 -13018695 + MER5B DNA MER1_type 8 111 -67 2163 94 13 10 chr1 269174969 269175278 -13018386 - AluSx SINE Alu -2 310 1 454 253 7 75 chr1 269175278 269175309 -13018355 + MER5B DNA MER1_type 111 143 -35 345 279 162 7 chr1 269175319 269175455 -13018209 - L2 LINE L2 -220 3093 2937 879 157 7 0 chr1 269175483 269175636 -13018028 + L1MA3 LINE L1 6152 6305 0 2288 160 127 10 chr1 269175715 269176210 -13017454 - MER68 LTR ERV1 -8 554 2 219 129 0 0 chr1 269176426 269176457 -13017207 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 751 221 0 0 chr1 269176460 269176768 -13016896 - FLAM_A SINE Alu 0 308 1 191 227 0 0 chr1 269177219 269177263 -13016401 - L2 LINE L2 -3 3310 3267 463 355 48 28 chr1 269177460 269177857 -13015807 - L2 LINE L2 -1178 2136 1732 280 243 0 0 chr1 269178417 269178487 -13015177 - MER116 DNA Mariner 0 80 11 246 232 18 0 chr1 269178497 269178553 -13015111 + MIR SINE MIR 152 208 -54 190 265 20 0 chr1 269178695 269178744 -13014920 + L3b LINE CR1 1287 1336 -247 1526 172 35 24 chr1 269178821 269179111 -13014553 - AluJo SINE Alu -19 293 1 245 258 117 55 chr1 269179179 269179307 -13014357 + MIR SINE MIR 108 243 -19 346 192 14 0 chr1 269179819 269179892 -13013772 + Tigger7 DNA MER2_type 1 74 -265 1069 162 64 47 chr1 269179908 269179926 -13013738 - Tigger7 DNA MER2_type -238 312 296 2316 74 0 0 chr1 269179926 269180333 -13013331 + AluSc SINE Alu 1 407 0 1069 162 64 47 chr1 269180333 269180546 -13013118 - Tigger7 DNA MER2_type -254 296 75 * 1578 135 74 15 chr1 269180544 269180568 -13013096 + Tigger7 DNA MER2_type 2243 2264 -323 186 43 0 0 chr1 269180568 269180591 -13013073 + (CATCT)n Simple_repeat Simple_repeat 2 24 0 1578 135 74 15 chr1 269180591 269180892 -13012772 + Tigger7 DNA MER2_type 2264 2587 0 965 175 9 37 chr1 269181708 269181925 -13011739 - L1MA10 LINE L1 -1 6333 6123 261 306 136 71 chr1 269182019 269182401 -13011263 + L2 LINE L2 2865 3271 -1 2595 171 54 57 chr1 269183255 269183602 -13010062 - L1MA9 LINE L1 -37 6275 5929 2169 120 3 13 chr1 269183602 269183918 -13009746 - AluSq SINE Alu 0 313 1 2595 171 54 57 chr1 269183918 269184237 -13009427 - L1MA9 LINE L1 -383 5929 5611 351 243 238 16 chr1 269184995 269185180 -13008484 - L2 LINE L2 -4 3309 3084 585 283 96 46 chr1 269185687 269185841 -13007823 - L1M4c LINE L1 -3531 2851 2706 1819 132 85 3 chr1 269185841 269186159 -13007505 - MER2 DNA MER2_type 0 344 1 585 283 96 46 chr1 269186159 269186545 -13007119 - L1M4c LINE L1 -3676 2706 2279 2363 69 3 69 chr1 269187713 269188048 -13005616 - AluSp SINE Alu 0 313 1 305 306 100 22 chr1 269188187 269188367 -13005297 - HAL1 LINE L1 -898 1609 1416 746 227 27 16 chr1 269189003 269189188 -13004476 - MER5A DNA MER1_type -2 187 1 1307 290 119 27 chr1 269189737 269190402 -13003262 - L2 LINE L2 -453 2861 2136 191 325 13 52 chr1 269190477 269190554 -13003110 + L3 LINE CR1 1485 1558 -19 510 17 0 0 chr1 269193306 269193365 -13000299 + (TTA)n Simple_repeat Simple_repeat 3 61 0 6476 51 7 17 chr1 269193365 269194174 -12999490 - L1PA7 LINE L1 -18 6136 5336 289 254 189 16 chr1 269194179 269194301 -12999363 + HAL1b LINE L1 475 617 -731 832 136 0 8 chr1 269194450 269194575 -12999089 + AluJo SINE Alu 11 134 -178 1639 152 0 91 chr1 269194758 269194905 -12998759 + AluJb SINE Alu 1 103 -209 2414 51 37 0 chr1 269194905 269195200 -12998464 + AluY SINE Alu 1 306 -5 1639 152 0 91 chr1 269195200 269195381 -12998283 + AluJb SINE Alu 103 299 -13 572 243 192 54 chr1 269195401 269195699 -12997965 + L1MC4a LINE L1 6502 6890 -984 1215 218 99 3 chr1 269196009 269196321 -12997343 + MER2 DNA MER2_type 2 343 -1 225 0 0 0 chr1 269196507 269196532 -12997132 + (ATG)n Simple_repeat Simple_repeat 2 26 0 899 167 0 0 chr1 269196549 269196687 -12996977 - AluSg/x SINE Alu -23 287 150 425 344 86 29 chr1 269196694 269197252 -12996412 + L1ME LINE L1 4729 5318 -828 513 302 52 22 chr1 269197346 269197578 -12996086 + L1ME LINE L1 5463 5701 -420 3176 190 36 28 chr1 269197583 269198272 -12995392 + L1MB8 LINE L1 5477 6171 -7 778 266 131 4 chr1 269198314 269198588 -12995076 + L2 LINE L2 2541 2849 -465 510 311 50 8 chr1 269199647 269199888 -12993776 - L1ME4a LINE L1 -296 5825 5575 1975 96 8 0 chr1 269200427 269200677 -12992987 + AluSq SINE Alu 1 252 -61 432 223 45 18 chr1 269201653 269201765 -12991899 + MER94 DNA DNA 20 134 0 638 276 25 10 chr1 269202298 269202501 -12991163 - MIR SINE MIR -26 236 31 870 119 71 0 chr1 269202608 269202734 -12990930 + AluJb SINE Alu 1 135 -177 1110 152 0 34 chr1 269202764 269202942 -12990722 + AluJb SINE Alu 118 289 -23 216 0 0 0 chr1 269203510 269203534 -12990130 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 269204582 269204605 -12989059 + (TGAG)n Simple_repeat Simple_repeat 2 24 0 383 137 14 0 chr1 269205201 269205274 -12988390 + CT-rich Low_complexity Low_complexity 2 75 0 481 247 6 6 chr1 269205311 269205489 -12988175 + CT-rich Low_complexity Low_complexity 1 178 0 201 167 33 17 chr1 269205513 269205573 -12988091 + CT-rich Low_complexity Low_complexity 1 61 0 423 0 0 0 chr1 269206162 269206209 -12987455 + (TG)n Simple_repeat Simple_repeat 2 48 0 807 170 15 0 chr1 269206673 269206808 -12986856 - BC200 scRNA scRNA -62 138 2 3142 92 23 2 chr1 269206834 269207270 -12986394 - L1PB3 LINE L1 0 6154 5710 1883 106 32 14 chr1 269207272 269207555 -12986109 - L1MC1 LINE L1 0 6333 6046 286 263 13 0 chr1 269208405 269208481 -12985183 - MIR SINE MIR -107 155 79 234 197 70 28 chr1 269208863 269208934 -12984730 - MIR SINE MIR -71 191 118 485 312 35 25 chr1 269209016 269209218 -12984446 - MER58A DNA MER1_type -2 222 19 1933 197 11 8 chr1 269210013 269210369 -12983295 - MLT2B1 LTR ERVL -48 472 116 996 163 158 9 chr1 269210476 269210697 -12982967 - L1MC1 LINE L1 -167 6166 5913 1238 121 5 62 chr1 269211116 269211340 -12982324 - L1MA5A LINE L1 -3 6294 6084 22 0 0 0 chr1 269212507 269212529 -12981135 + AT_rich Low_complexity Low_complexity 1 22 0 727 222 35 30 chr1 269212529 269212759 -12980905 - L1MC5 LINE L1 -23 7938 7708 1557 165 15 15 chr1 269212759 269213026 -12980638 + AluSx SINE Alu 1 267 -45 2302 203 54 96 chr1 269213188 269213986 -12979678 - L1MC5 LINE L1 -385 7576 6823 207 0 0 0 chr1 269213986 269214009 -12979655 + (ATTG)n Simple_repeat Simple_repeat 3 25 0 2302 203 54 96 chr1 269214009 269214154 -12979510 - L1MC5 LINE L1 -1138 6823 6673 1499 258 119 8 chr1 269214163 269214651 -12979013 - L1MC1 LINE L1 -2012 5796 5255 22 35 0 0 chr1 269214661 269214690 -12978974 + AT_rich Low_complexity Low_complexity 1 29 0 2088 143 3 3 chr1 269214712 269215013 -12978651 - AluSx SINE Alu -11 301 1 458 187 9 56 chr1 269216521 269216628 -12977036 + MER5A DNA MER1_type 4 105 -84 227 170 19 38 chr1 269218448 269218501 -12975163 - MIR SINE MIR -60 202 151 12257 173 32 70 chr1 269219082 269219648 -12974016 + L1PB1 LINE L1 1 587 -6280 2333 77 0 7 chr1 269219648 269219946 -12973718 + AluY SINE Alu 1 296 -15 12257 173 32 70 chr1 269219946 269222473 -12971191 + L1PB1 LINE L1 587 3208 -3659 2024 143 11 66 chr1 269222473 269222836 -12970828 - LTR3b LTR ERVK 0 500 158 12257 173 32 70 chr1 269222836 269226292 -12967372 + L1PB1 LINE L1 3208 6860 -7 218 303 67 0 chr1 269227215 269227334 -12966330 + L2 LINE L2 2934 3060 -253 2292 129 33 30 chr1 269227383 269227746 -12965918 + THE1B LTR MaLR 1 364 0 2693 158 21 31 chr1 269227746 269228228 -12965436 + MER66B LTR ERV1 10 486 0 218 247 24 59 chr1 269228248 269228333 -12965331 + L2 LINE L2 3167 3248 -65 2195 160 97 62 chr1 269228333 269228350 -12965314 - MER67A LTR ERV1 0 543 528 2259 115 0 6 chr1 269228350 269228662 -12965002 + AluSx SINE Alu 1 310 -2 2195 160 97 62 chr1 269228662 269229162 -12964502 - MER67A LTR ERV1 -15 528 8 285 228 0 0 chr1 269229167 269229224 -12964440 + L2 LINE L2 3256 3312 -1 1584 179 58 0 chr1 269230016 269230307 -12963357 - L1M4 LINE L1 -449 5735 5428 1028 161 47 0 chr1 269230324 269230535 -12963129 - L1MA7 LINE L1 -5 6286 6066 4115 144 14 26 chr1 269230535 269230631 -12963033 + L1M2 LINE L1 4679 4775 -1516 1783 192 0 25 chr1 269230631 269230949 -12962715 + AluJo SINE Alu 1 310 -2 4115 144 14 26 chr1 269230949 269231889 -12961775 + L1M2 LINE L1 4775 5704 -587 1164 147 26 0 chr1 269231883 269232138 -12961526 - L1M4 LINE L1 -743 5403 5181 * 189 342 53 0 chr1 269232638 269232714 -12960950 + L3b LINE CR1 1504 1583 0 683 115 0 0 chr1 269233529 269233625 -12960039 + AluY SINE Alu 206 301 -10 1993 91 7 62 chr1 269233647 269233956 -12959708 + L1PA11 LINE L1 5717 6008 -166 2173 122 3 0 chr1 269235123 269235418 -12958246 + AluSg SINE Alu 1 296 -14 569 266 155 3 chr1 269235714 269236004 -12957660 - L1ME4a LINE L1 -262 5859 5526 718 96 0 0 chr1 269237064 269237158 -12956506 + AluSg/x SINE Alu 192 285 -27 350 202 0 20 chr1 269239065 269239164 -12954500 + CT-rich Low_complexity Low_complexity 2 98 0 727 227 29 23 chr1 269239252 269239424 -12954240 - MIR SINE MIR 0 262 90 239 206 0 0 chr1 269239525 269239565 -12954099 - L2 LINE L2 -18 3294 3215 627 149 39 0 chr1 269240563 269240717 -12952947 + CT-rich Low_complexity Low_complexity 4 163 0 1592 177 3 44 chr1 269240973 269241290 -12952374 + AluJo SINE Alu 1 304 -8 193 324 57 29 chr1 269241316 269241421 -12952243 - MIR3 SINE MIR -53 155 48 2153 119 72 20 chr1 269243212 269243557 -12950107 + THE1B LTR MaLR 2 364 0 11494 98 18 14 chr1 269243557 269245130 -12948534 + THE1B-int LTR MaLR 1 1580 0 2311 90 72 20 chr1 269245130 269245476 -12948188 + THE1B LTR MaLR 1 364 0 429 279 90 29 chr1 269245709 269245953 -12947711 + MIR SINE MIR 3 261 -1 2085 136 0 0 chr1 269247256 269247564 -12946100 + AluJb SINE Alu 5 312 0 2115 178 62 27 chr1 269250033 269250094 -12943570 - MSTB1 LTR MaLR -13 419 362 2649 20 0 0 chr1 269250094 269250397 -12943267 + AluYa5 SINE Alu 1 303 -8 2115 178 62 27 chr1 269250397 269250740 -12942924 - MSTB1 LTR MaLR -70 362 1 261 288 18 18 chr1 269251286 269251397 -12942267 + L1P LINE L1 4533 4643 -1503 657 295 112 92 chr1 269251397 269251800 -12941864 + L1M4 LINE L1 4692 5110 -1036 1983 134 7 0 chr1 269251800 269252091 -12941573 - AluSx SINE Alu -19 293 1 657 295 112 92 chr1 269252091 269252240 -12941424 + L1M4 LINE L1 5110 5255 -891 362 268 8 16 chr1 269252247 269252370 -12941294 + L1M LINE L1 5294 5415 -2393 1739 157 14 0 chr1 269252683 269252976 -12940688 + AluJb SINE Alu 1 297 -15 615 182 8 0 chr1 269253006 269253127 -12940537 - L1MB7 LINE L1 -10 6174 6053 1963 139 56 0 chr1 269253871 269254210 -12939454 - L1MB3 LINE L1 -7 6176 5819 1488 200 19 16 chr1 269254261 269254679 -12938985 - AluJo SINE Alu 0 419 1 949 185 22 0 chr1 269254681 269254859 -12938805 - L1MB3 LINE L1 -342 5829 5648 213 182 45 0 chr1 269255538 269255582 -12938082 + GA-rich Low_complexity Low_complexity 5 50 0 38 0 0 0 chr1 269256148 269256186 -12937478 + AT_rich Low_complexity Low_complexity 1 38 0 2231 119 0 0 chr1 269257150 269257462 -12936202 + AluSx SINE Alu 1 312 0 800 119 16 8 chr1 269257470 269257596 -12936068 + AluJ SINE Alu 1 127 -185 2513 55 0 0 chr1 269258199 269258510 -12935154 - AluY SINE Alu 0 311 1 610 227 127 0 chr1 269258918 269259068 -12934596 + AluJ SINE Alu 134 302 -10 803 304 24 8 chr1 269259271 269259521 -12934143 + MIR SINE MIR 1 254 -8 180 77 0 0 chr1 269259527 269259553 -12934111 + (CAT)n Simple_repeat Simple_repeat 1 26 0 218 322 153 52 chr1 269259608 269260105 -12933559 + L2 LINE L2 2035 2581 -733 26 0 0 0 chr1 269260298 269260324 -12933340 + AT_rich Low_complexity Low_complexity 1 26 0 1529 99 36 18 chr1 269260820 269261043 -12932621 + MER30 DNA MER1_type 4 230 0 2096 113 13 0 chr1 269262935 269263236 -12930428 + AluSq SINE Alu 1 305 -8 2112 108 0 7 chr1 269263709 269264005 -12929659 + AluSc SINE Alu 1 294 -15 385 225 76 76 chr1 269264374 269264610 -12929054 - HAL1 LINE L1 -1211 1296 1061 388 155 175 0 chr1 269264843 269264940 -12928724 + HAL1 LINE L1 972 1085 -1422 960 129 7 14 chr1 269264965 269265112 -12928552 + AluSx SINE Alu 35 180 -132 3614 138 35 9 chr1 269265433 269266090 -12927574 - L1MA4A LINE L1 -5 6298 5625 1381 215 132 73 chr1 269266119 269266681 -12926983 - MLT1G LTR MaLR 0 590 1 230 264 0 0 chr1 269267800 269267853 -12925811 + (TATG)n Simple_repeat Simple_repeat 2 54 0 480 252 0 0 chr1 269267882 269268199 -12925465 + (TTGG)n Simple_repeat Simple_repeat 1 317 0 447 250 0 0 chr1 269268213 269268393 -12925271 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 468 236 0 0 chr1 269268497 269268675 -12924989 + (TTGG)n Simple_repeat Simple_repeat 3 180 0 246 253 0 0 chr1 269268688 269268787 -12924877 + (TTGG)n Simple_repeat Simple_repeat 3 101 0 606 202 0 0 chr1 269268805 269268983 -12924681 + (TTGG)n Simple_repeat Simple_repeat 3 180 0 381 261 0 0 chr1 269269025 269269205 -12924459 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 318 267 0 0 chr1 269269242 269269403 -12924261 + (TTGG)n Simple_repeat Simple_repeat 3 163 0 369 261 0 0 chr1 269269417 269269597 -12924067 + (TTGG)n Simple_repeat Simple_repeat 1 180 0 424 221 197 0 chr1 269270549 269270671 -12922993 + MER45C DNA AcHobo 497 642 -311 325 265 189 0 chr1 269270926 269271058 -12922606 + MER103 DNA DNA 3 159 -7 238 236 79 0 chr1 269271236 269271325 -12922339 + L1ME1 LINE L1 5791 5886 -1922 184 333 172 0 chr1 269272743 269272830 -12920834 + L3 LINE CR1 559 660 -917 2393 164 98 49 chr1 269272909 269274004 -12919660 + L1MC2 LINE L1 5154 6337 -7 520 210 6 45 chr1 269274123 269274181 -12919483 + L1ME1 LINE L1 6010 6069 -97 4093 158 42 6 chr1 269274181 269274878 -12918786 + MER72 LTR ERV1 1 722 0 520 210 6 45 chr1 269274878 269274976 -12918688 + L1ME1 LINE L1 6069 6160 -6 1054 288 33 93 chr1 269275588 269275871 -12917793 + L3 LINE CR1 667 965 -612 1754 196 55 133 chr1 269275871 269276660 -12917004 - LTR8A LTR ERV1 0 727 1 1054 288 33 93 chr1 269276660 269277012 -12916652 + L3 LINE CR1 965 1264 -313 207 264 19 0 chr1 269277043 269277096 -12916568 + L3 LINE CR1 1523 1576 -1 1058 111 0 13 chr1 269277402 269277588 -12916076 + AluSg/x SINE Alu 133 316 0 249 354 12 0 chr1 269278072 269278154 -12915510 - MER5A DNA MER1_type -5 184 102 294 335 91 23 chr1 269278474 269278650 -12915014 + MIR SINE MIR 30 217 -45 374 298 21 0 chr1 269279411 269279505 -12914159 - MER5A DNA MER1_type -84 105 10 306 261 29 68 chr1 269279644 269279823 -12913841 + MIR SINE MIR 44 210 -52 1711 158 10 7 chr1 269281105 269281403 -12912261 + AluJb SINE Alu 1 299 -13 207 0 0 0 chr1 269281872 269281895 -12911769 + (TA)n Simple_repeat Simple_repeat 2 24 0 384 219 24 0 chr1 269282632 269282714 -12910950 - L2 LINE L2 -1 3312 3229 817 154 0 0 chr1 269282810 269282933 -12910731 - FLAM_C SINE Alu -19 124 2 209 367 44 0 chr1 269284424 269284514 -12909150 - MIR3 SINE MIR -4 204 111 245 169 62 0 chr1 269285046 269285111 -12908553 + (ATG)n Simple_repeat Simple_repeat 3 71 0 1003 104 0 0 chr1 269285118 269285253 -12908411 + AluSq/x SINE Alu 1 135 -178 1943 153 0 0 chr1 269285253 269285553 -12908111 + AluSx SINE Alu 1 300 -12 181 146 42 0 chr1 269285597 269285645 -12908019 + (ATG)n Simple_repeat Simple_repeat 2 51 0 199 291 12 58 chr1 269286290 269286376 -12907288 + MIR SINE MIR 59 140 -122 2094 109 7 0 chr1 269286392 269286686 -12906978 + AluSp SINE Alu 8 303 -10 2065 106 24 7 chr1 269288000 269288293 -12905371 + AluSx SINE Alu 1 298 -14 22 56 0 0 chr1 269289140 269289176 -12904488 + AT_rich Low_complexity Low_complexity 1 36 0 360 250 0 0 chr1 269289201 269289277 -12904387 + L2 LINE L2 3155 3230 -42 348 353 15 0 chr1 269292091 269292227 -12901437 - MIR SINE MIR -105 157 20 204 313 181 6 chr1 269292986 269293146 -12900518 + MIR SINE MIR 41 228 -34 334 300 96 52 chr1 269293597 269293867 -12899797 - L2 LINE L2 -1 3312 3031 182 250 0 36 chr1 269293911 269293967 -12899697 - L2 LINE L2 -262 3051 2998 182 269 22 97 chr1 269294184 269294318 -12899346 - L2 LINE L2 -221 3051 2928 206 345 72 7 chr1 269294617 269294756 -12898908 + MIR SINE MIR 7 154 -108 306 238 127 40 chr1 269294789 269294915 -12898749 - MIR SINE MIR -16 246 110 2108 98 0 28 chr1 269295098 269295385 -12898279 + AluSc SINE Alu 24 302 -7 185 333 93 80 chr1 269295715 269295865 -12897799 - L2 LINE L2 0 3272 3121 315 220 0 0 chr1 269296034 269296093 -12897571 - MER117 DNA MER1_type -80 117 59 211 311 74 0 chr1 269296208 269296330 -12897334 - L2 LINE L2 -309 2963 2833 324 336 20 0 chr1 269296470 269296619 -12897045 - MER112 DNA MER1_type -41 219 68 306 353 17 0 chr1 269296795 269296914 -12896750 - MIR SINE MIR -49 213 93 343 398 31 11 chr1 269298014 269298205 -12895459 + MIR3 SINE MIR 8 202 -6 1305 191 67 97 chr1 269300060 269300350 -12893314 - MLT1B LTR MaLR 0 390 114 1745 181 0 7 chr1 269300350 269300679 -12892985 - AluJb SINE Alu 0 312 1 1305 191 67 97 chr1 269300679 269300790 -12892874 - MLT1B LTR MaLR -276 114 1 205 333 52 37 chr1 269300996 269301131 -12892533 + MIR SINE MIR 31 167 -95 2038 220 58 4 chr1 269301830 269302329 -12891335 + L1MB7 LINE L1 5648 6173 -11 261 0 0 0 chr1 269303103 269303132 -12890532 + (CA)n Simple_repeat Simple_repeat 1 29 0 2522 64 0 0 chr1 269303530 269303827 -12889837 - AluY SINE Alu -14 297 1 198 71 0 0 chr1 269304860 269304888 -12888776 + (TG)n Simple_repeat Simple_repeat 2 29 0 279 290 170 0 chr1 269305255 269305355 -12888309 - MER103 DNA DNA -47 119 3 423 162 8 111 chr1 269307224 269307341 -12886323 - MER5A DNA MER1_type -80 109 5 315 71 0 0 chr1 269308648 269308690 -12884974 + (A)n Simple_repeat Simple_repeat 1 42 0 373 313 95 14 chr1 269310603 269310750 -12882914 + MIR SINE MIR 33 191 -71 206 302 0 16 chr1 269311395 269311458 -12882206 + MIR3 SINE MIR 144 205 -3 242 44 0 67 chr1 269311614 269311659 -12882005 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1827 160 3 3 chr1 269311669 269311951 -12881713 - AluJo SINE Alu -30 282 1 2141 131 3 3 chr1 269313254 269313560 -12880104 + AluSq SINE Alu 1 306 -7 612 251 88 12 chr1 269314207 269314378 -12879286 + MIR SINE MIR 23 206 -56 240 273 13 39 chr1 269318009 269318086 -12875578 + MIR SINE MIR 188 262 0 1775 157 7 25 chr1 269318196 269318525 -12875139 + AluJo SINE Alu 1 324 0 480 200 0 0 chr1 269318998 269319128 -12874536 + (CA)n Simple_repeat Simple_repeat 1 130 0 237 280 47 46 chr1 269320025 269320206 -12873458 + MIR SINE MIR 36 216 -46 1954 113 57 0 chr1 269320673 269320795 -12872869 + AluJb SINE Alu 1 115 -197 216 67 0 0 chr1 269320795 269320825 -12872839 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1954 113 57 0 chr1 269320825 269320984 -12872680 + AluJb SINE Alu 115 298 -14 2514 156 18 28 chr1 269320986 269321421 -12872243 - Tigger2a DNA MER2_type 0 434 4 294 29 0 0 chr1 269321422 269321457 -12872207 + (TG)n Simple_repeat Simple_repeat 2 36 0 3751 122 53 34 chr1 269321907 269322530 -12871134 - MER41B LTR ERV1 0 635 1 377 232 0 24 chr1 269322820 269322902 -12870762 - L2 LINE L2 -5 3267 3188 368 252 44 92 chr1 269323037 269323243 -12870421 + MIR SINE MIR 60 255 -7 776 188 156 0 chr1 269324299 269324459 -12869205 + MER5A DNA MER1_type 5 189 0 330 161 16 0 chr1 269324541 269324603 -12869061 + MER5B DNA MER1_type 1 63 -115 2292 104 3 0 chr1 269324604 269324903 -12868761 + AluSx SINE Alu 1 300 -12 2403 258 152 48 chr1 269324996 269325314 -12868350 + L2 LINE L2 1534 1818 -1495 1480 229 3 22 chr1 269325314 269325629 -12868035 - AluJo SINE Alu -3 309 1 2403 258 152 48 chr1 269325629 269326117 -12867547 + L2 LINE L2 1818 2254 -1059 859 135 8 15 chr1 269326117 269326250 -12867414 - FLAM_C SINE Alu -1 132 1 2403 258 152 48 chr1 269326250 269326981 -12866683 + L2 LINE L2 2254 3290 -23 463 258 85 78 chr1 269327035 269327306 -12866358 + L1ME3A LINE L1 5316 5584 -580 2078 157 6 6 chr1 269327306 269327650 -12866014 - MER7A DNA MER2_type 0 346 5 7328 64 12 14 chr1 269327655 269329267 -12864397 - SVA Other Other -683 1386 52 463 258 85 78 chr1 269329267 269329278 -12864386 + L1ME3A LINE L1 5587 5596 -568 294 29 0 0 chr1 269329278 269329313 -12864351 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 463 258 85 78 chr1 269329313 269329470 -12864194 + L1ME3A LINE L1 5596 5767 -397 295 311 21 27 chr1 269329572 269329741 -12863923 + L1ME3A LINE L1 5788 5956 -206 25 83 0 0 chr1 269329969 269330029 -12863635 + AT_rich Low_complexity Low_complexity 1 60 0 2372 123 29 81 chr1 269330411 269330867 -12862797 + MSTB1 LTR MaLR 1 432 0 2063 146 0 3 chr1 269332662 269332964 -12860700 + AluJb SINE Alu 1 301 -11 235 338 0 0 chr1 269333371 269333445 -12860219 + L3 LINE CR1 1496 1569 -8 1987 140 11 25 chr1 269335865 269336223 -12857441 + MER46B DNA MER2_type 8 235 -1 228 185 0 0 chr1 269336356 269336410 -12857254 + (TAGG)n Simple_repeat Simple_repeat 2 55 0 239 104 21 0 chr1 269336410 269336458 -12857206 + (CA)n Simple_repeat Simple_repeat 2 50 0 30 0 0 0 chr1 269336572 269336602 -12857062 + AT_rich Low_complexity Low_complexity 1 30 0 767 324 20 4 chr1 269336630 269336874 -12856790 - MIR SINE MIR -5 257 10 237 274 55 27 chr1 269337358 269337431 -12856233 + L2 LINE L2 3160 3234 -38 1879 169 3 0 chr1 269338730 269339026 -12854638 + AluJb SINE Alu 1 297 -15 2176 139 3 0 chr1 269339027 269339337 -12854327 + AluSx SINE Alu 1 311 -1 1620 199 30 6 chr1 269339409 269339740 -12853924 - MLT1A1 LTR MaLR -2 363 25 1693 122 11 78 chr1 269339740 269340108 -12853556 - MER4A LTR ERV1 0 664 263 648 111 0 10 chr1 269340108 269340207 -12853457 - MER4A LTR ERV1 -566 98 1 514 306 110 14 chr1 269341491 269341710 -12851954 - MIR SINE MIR -11 251 12 1892 147 65 22 chr1 269341880 269342247 -12851417 + MLT1B LTR MaLR 1 383 -7 211 296 0 0 chr1 269343706 269343750 -12849914 + L3b LINE CR1 1408 1451 -132 1942 149 3 0 chr1 269344735 269345023 -12848641 - AluJo SINE Alu -23 289 1 610 281 20 7 chr1 269345025 269345178 -12848486 - MIR SINE MIR -84 178 24 235 312 26 13 chr1 269345677 269345754 -12847910 + L3 LINE CR1 221 298 -1279 747 353 76 14 chr1 269346515 269346934 -12846730 + L3 LINE CR1 319 763 -814 670 269 19 6 chr1 269346932 269347088 -12846576 - MIR SINE MIR -81 181 24 * 389 341 130 31 chr1 269347111 269347495 -12846169 + L3 LINE CR1 764 1185 -392 22 0 0 0 chr1 269347676 269347698 -12845966 + AT_rich Low_complexity Low_complexity 1 22 0 1562 156 15 88 chr1 269347706 269348034 -12845630 + AluJo SINE Alu 1 304 -8 370 290 142 33 chr1 269348066 269348249 -12845415 - MIR SINE MIR -35 227 25 814 262 72 0 chr1 269348323 269348544 -12845120 - MIR SINE MIR 0 262 26 1840 164 3 10 chr1 269348712 269349005 -12844659 - AluJo SINE Alu -21 291 1 319 333 36 50 chr1 269349447 269349666 -12843998 - MIR SINE MIR -34 228 13 550 288 84 73 chr1 269350278 269351172 -12842492 + L1MEd LINE L1 322 1225 -4894 230 143 24 0 chr1 269351518 269351560 -12842104 - MLT1K LTR MaLR -37 551 509 471 227 208 7 chr1 269352043 269352197 -12841467 - MER5A DNA MER1_type 0 189 5 1495 161 145 8 chr1 269352292 269352547 -12841117 - AluJb SINE Alu -12 290 1 1014 72 22 22 chr1 269353176 269353315 -12840349 - MER85 DNA T2_type 0 139 1 263 213 13 67 chr1 269353741 269353816 -12839848 - MIR3 SINE MIR -27 181 111 399 286 86 23 chr1 269355249 269355424 -12838240 + MIR3 SINE MIR 21 206 -2 354 348 43 27 chr1 269355504 269355691 -12837973 - L2 LINE L2 -2 3270 3081 5334 160 32 29 chr1 269357785 269358416 -12835248 + L1MA10 LINE L1 5312 5949 -385 1108 168 0 0 chr1 269358416 269358577 -12835087 + FRAM SINE Alu 1 161 -5 5334 160 32 29 chr1 269358577 269358952 -12834712 + L1MA10 LINE L1 5949 6321 -13 250 248 102 32 chr1 269358996 269359153 -12834511 - L2 LINE L2 -169 3144 2977 341 248 338 13 chr1 269359170 269359327 -12834337 - L2 LINE L2 -540 2774 2567 378 256 40 48 chr1 269359364 269359489 -12834175 + MER5A DNA MER1_type 7 130 -59 2477 93 0 0 chr1 269360340 269360651 -12833013 + AluY SINE Alu 1 311 0 271 80 100 0 chr1 269360651 269360701 -12832963 + L1MB2 LINE L1 6115 6169 -2 254 314 23 0 chr1 269361114 269361200 -12832464 - MER5A DNA MER1_type -55 134 47 335 302 224 35 chr1 269361585 269362045 -12831619 - L2 LINE L2 -616 2698 2152 263 105 0 0 chr1 269362062 269362100 -12831564 - 5S rRNA rRNA -76 45 8 6488 79 8 1 chr1 269362100 269362968 -12830696 + L1PA8A LINE L1 5232 6104 -27 359 321 124 12 chr1 269363027 269363437 -12830227 - L2 LINE L2 -1217 2097 1641 250 366 56 7 chr1 269363437 269363579 -12830085 + MIR3 SINE MIR 3 151 -57 1620 274 184 25 chr1 269363688 269364816 -12828848 - HAL1 LINE L1 -2 2505 1181 727 40 10 10 chr1 269364816 269364916 -12828748 + (TTCC)n Simple_repeat Simple_repeat 4 103 0 1620 274 184 25 chr1 269364916 269364964 -12828700 - HAL1 LINE L1 -1326 1181 1142 416 155 0 0 chr1 269364975 269365033 -12828631 - Alu SINE Alu -21 291 234 421 263 22 95 chr1 269365693 269365967 -12827697 + HAL1b LINE L1 281 534 -814 954 202 17 69 chr1 269365980 269366213 -12827451 - MER58A DNA MER1_type -1 223 3 5717 212 68 55 chr1 269366790 269369329 -12824335 + L1MB4 LINE L1 42 2604 -4040 2121 126 13 7 chr1 269369329 269369639 -12824025 - AluSx SINE Alu 0 312 1 5717 212 68 55 chr1 269369639 269370472 -12823192 + L1MB4 LINE L1 2604 3424 -3220 4554 207 37 20 chr1 269370497 269372371 -12821293 + L1MB4 LINE L1 4778 6678 0 192 77 0 0 chr1 269372538 269372564 -12821100 + (TAG)n Simple_repeat Simple_repeat 3 28 0 2412 46 4 0 chr1 269372634 269372961 -12820703 + AluY SINE Alu 1 328 0 466 271 73 79 chr1 269373034 269373297 -12820367 + MER102b DNA MER1_type 41 303 -1125 2170 151 5 50 chr1 269373297 269373674 -12819990 + MLT1A1 LTR MaLR 3 362 -3 466 271 73 79 chr1 269373674 269373713 -12819951 + MER102b DNA MER1_type 303 341 0 240 58 39 19 chr1 269373746 269373798 -12819866 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 698 225 0 0 chr1 269374691 269374811 -12818853 + FLAM_A SINE Alu 1 120 -13 2229 118 0 13 chr1 269375250 269375563 -12818101 - AluSg SINE Alu -1 309 1 2234 93 3 0 chr1 269375588 269375879 -12817785 - AluY SINE Alu -17 294 3 500 208 28 0 chr1 269375929 269376035 -12817629 - MLT1B LTR MaLR -61 329 221 824 124 0 0 chr1 269376036 269376149 -12817515 + FLAM_C SINE Alu 9 121 -22 24 0 0 0 chr1 269376152 269376176 -12817488 + AT_rich Low_complexity Low_complexity 1 24 0 1584 188 0 40 chr1 269376179 269376477 -12817187 + AluJo SINE Alu 5 290 -22 228 185 25 151 chr1 269376490 269376609 -12817055 - MLT1H LTR MaLR -26 523 420 239 158 88 0 chr1 269376885 269376942 -12816722 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1698 212 96 52 chr1 269376951 269376995 -12816669 + MER97b DNA MER1_type? 242 283 -770 2224 96 0 3 chr1 269376995 269377287 -12816377 - AluSx SINE Alu -21 291 1 1698 212 96 52 chr1 269377287 269377785 -12815879 + MER97b DNA MER1_type? 283 808 -245 2264 101 0 0 chr1 269378169 269378467 -12815197 - AluY SINE Alu -13 298 1 2860 147 20 2 chr1 269378688 269379137 -12814527 - MER65C LTR ERV1 -4 457 1 607 266 91 18 chr1 269379358 269379644 -12814020 + MER97c DNA MER1_type? 777 1083 -7 828 248 153 23 chr1 269379720 269380119 -12813545 + L2 LINE L2 2863 3313 0 495 327 62 38 chr1 269380309 269380728 -12812936 + HAL1 LINE L1 628 1056 -1451 746 151 0 0 chr1 269380788 269380894 -12812770 + FLAM_C SINE Alu 2 107 -36 878 120 42 0 chr1 269380962 269381104 -12812560 - MER65C LTR ERV1 -4 457 310 2015 242 45 8 chr1 269381106 269381623 -12812041 + L1ME2 LINE L1 5393 5928 -236 3458 244 63 17 chr1 269381645 269383512 -12810152 + L1MEc LINE L1 1973 3918 -2297 500 143 23 179 chr1 269383524 269383825 -12809839 + AluSx SINE Alu 9 262 -50 1437 227 56 7 chr1 269383868 269384277 -12809387 + L1MEc LINE L1 3900 4328 -1887 510 250 91 23 chr1 269384290 269384466 -12809198 + MLT1J LTR MaLR 29 216 -295 520 193 56 75 chr1 269384497 269384658 -12809006 + MLT1J LTR MaLR 344 501 -10 23 33 0 0 chr1 269384789 269384819 -12808845 + AT_rich Low_complexity Low_complexity 1 30 0 523 366 6 0 chr1 269385047 269385219 -12808445 + MIR SINE MIR 25 197 -65 454 288 103 7 chr1 269385485 269385631 -12808033 - MIR SINE MIR -70 192 33 1872 123 0 28 chr1 269386500 269386819 -12806845 - AluSg SINE Alu 0 315 5 2023 208 93 25 chr1 269386821 269387393 -12806271 + L1MD3 LINE L1 7371 7981 -14 21 0 0 0 chr1 269387426 269387447 -12806217 + AT_rich Low_complexity Low_complexity 1 21 0 2018 98 18 98 chr1 269387705 269388033 -12805631 - AluSx SINE Alu -10 302 1 2220 95 0 41 chr1 269389314 269389630 -12804034 - AluSg SINE Alu -7 303 1 1619 196 107 27 chr1 269389636 269390086 -12803578 - Charlie4a DNA MER1_type -3 505 20 198 273 15 15 chr1 269391657 269391723 -12801941 - MIR SINE MIR -58 150 85 248 364 56 10 chr1 269391994 269392189 -12801475 + L2 LINE L2 2450 2653 -661 379 273 86 27 chr1 269392488 269392675 -12800989 + L2 LINE L2 2878 3075 -197 204 40 0 0 chr1 269392834 269392859 -12800805 + (TC)n Simple_repeat Simple_repeat 2 26 0 257 271 103 19 chr1 269393300 269393407 -12800257 + L2 LINE L2 3190 3305 -8 335 340 39 54 chr1 269393759 269394091 -12799573 - LTR16C LTR ERVL -49 442 116 459 234 214 14 chr1 269395370 269395515 -12798149 + MIR SINE MIR 47 220 -42 547 95 48 0 chr1 269395928 269396012 -12797652 + AluS SINE Alu 2 89 -224 541 250 21 7 chr1 269396411 269396551 -12797113 + MIR3 SINE MIR 65 206 -2 407 339 174 26 chr1 269398534 269398844 -12794820 - L2 LINE L2 0 3272 2917 602 301 96 15 chr1 269399087 269399419 -12794245 - L2 LINE L2 -887 2427 2069 332 289 188 7 chr1 269399449 269399598 -12794066 + MIR SINE MIR 81 256 -6 843 141 0 8 chr1 269399727 269399855 -12793809 + FLAM_C SINE Alu 1 127 -16 295 274 48 27 chr1 269399871 269400017 -12793647 - L2 LINE L2 -1343 1971 1823 215 317 30 79 chr1 269400022 269400123 -12793541 - MIR SINE MIR -147 115 20 412 358 50 20 chr1 269400530 269400731 -12792933 - L2 LINE L2 -559 2755 2549 252 325 114 0 chr1 269400755 269400878 -12792786 - L2 LINE L2 -899 2415 2279 2475 212 104 8 chr1 269400964 269401569 -12792095 - LTR65 LTR ERV1 -2 667 5 1902 132 17 7 chr1 269401710 269401999 -12791665 + AluSx SINE Alu 1 292 -20 417 96 12 36 chr1 269401999 269402082 -12791582 + (GGGA)n Simple_repeat Simple_repeat 3 83 0 1783 42 14 5 chr1 269402323 269402537 -12791127 + L1PA4 LINE L1 5938 6153 -2 225 0 0 0 chr1 269402564 269402589 -12791075 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 271 21 0 chr1 269403148 269403196 -12790468 - L2 LINE L2 -680 2634 2586 229 175 0 35 chr1 269403240 269403297 -12790367 + L1MD3 LINE L1 3991 4045 -2101 964 233 69 26 chr1 269403305 269403683 -12789981 + L1MD3 LINE L1 4122 4515 -1631 359 123 174 2 chr1 269403683 269403844 -12789820 - MER2 DNA MER2_type 0 345 129 4725 117 35 14 chr1 269403844 269404496 -12789168 - Tigger1 DNA MER2_type -1 2417 1747 2128 110 17 3 chr1 269404496 269404788 -12788876 - AluSx SINE Alu -16 296 1 4725 117 35 14 chr1 269404788 269404860 -12788804 - Tigger1 DNA MER2_type -671 1747 1678 * 6761 114 52 14 chr1 269404845 269405632 -12788032 - Tigger1 DNA MER2_type -1292 1126 285 2288 95 7 0 chr1 269405632 269405928 -12787736 - AluSx SINE Alu -14 298 1 6761 114 52 14 chr1 269405928 269406225 -12787439 - Tigger1 DNA MER2_type -2133 285 1 870 176 0 0 chr1 269406225 269406355 -12787309 - MER2 DNA MER2_type -214 131 2 3819 205 122 21 chr1 269406355 269408353 -12785311 + L1MD3 LINE L1 4513 5396 -750 334 297 40 0 chr1 269408391 269408492 -12785172 + MLT1F1 LTR MaLR 1 105 -462 2531 48 7 0 chr1 269408492 269408786 -12784878 - AluY SINE Alu -11 300 5 2023 208 93 25 chr1 269408788 269409360 -12784304 + L1MD3 LINE L1 7371 7981 -14 21 0 0 0 chr1 269409393 269409414 -12784250 + AT_rich Low_complexity Low_complexity 1 21 0 2027 97 18 97 chr1 269409672 269410001 -12783663 - AluSx SINE Alu -9 303 1 1506 141 129 0 chr1 269411077 269411340 -12782324 + AluSx SINE Alu 1 297 -15 2449 52 0 29 chr1 269411699 269412008 -12781656 - AluY SINE Alu -11 300 1 342 80 0 0 chr1 269412266 269412316 -12781348 - L1PA15 LINE L1 -4 6161 6112 663 217 51 6 chr1 269413059 269413216 -12780448 + MER104 DNA Tc2 4 167 -13 25 31 0 0 chr1 269413249 269413281 -12780383 + AT_rich Low_complexity Low_complexity 1 32 0 983 73 24 0 chr1 269413800 269413924 -12779740 + AluSq/x SINE Alu 1 127 -186 2113 112 0 23 chr1 269413931 269414235 -12779429 + AluSx SINE Alu 1 297 -15 266 316 230 32 chr1 269414250 269414750 -12778914 - L2 LINE L2 -561 2753 2155 1711 107 74 11 chr1 269414781 269415051 -12778613 + L1MA6 LINE L1 6013 6299 -1 507 274 221 14 chr1 269415174 269415624 -12778040 + L2 LINE L2 1723 3313 0 201 230 46 46 chr1 269415769 269415856 -12777808 + MER5A DNA MER1_type 103 189 0 324 158 0 0 chr1 269416189 269416246 -12777418 + GA-rich Low_complexity Low_complexity 2 58 0 387 304 0 20 chr1 269417359 269417461 -12776203 + MIR SINE MIR 50 149 -113 5453 26 2 2 chr1 269417827 269418430 -12775234 + L1PA3 LINE L1 5550 6152 -3 208 311 229 18 chr1 269420056 269420493 -12773171 + L2 LINE L2 1180 1708 -1606 1828 143 3 35 chr1 269420955 269421269 -12772395 - AluJb SINE Alu -8 304 1 348 350 51 60 chr1 269421671 269422002 -12771662 + L2 LINE L2 2948 3275 -38 2346 94 0 13 chr1 269422064 269422371 -12771293 - AluSx SINE Alu -9 303 1 570 116 23 0 chr1 269425506 269425592 -12768072 + MER21A LTR ERV1 1 88 -843 2250 175 57 9 chr1 269425600 269425725 -12767939 - L1MC3 LINE L1 -612 7173 7055 2270 99 7 0 chr1 269425725 269426017 -12767647 - AluSx SINE Alu -16 296 3 2250 175 57 9 chr1 269426017 269426348 -12767316 - L1MC3 LINE L1 -730 7055 6695 4964 109 18 12 chr1 269426630 269427316 -12766348 + LTR8 LTR ERV1 1 690 -1 229 184 82 0 chr1 269427872 269427921 -12765743 - HsTC2 DNA Tc2 -608 1290 1238 310 279 33 41 chr1 269427925 269428047 -12765617 - HsTC2 DNA Tc2 -1774 124 4 26 0 0 0 chr1 269428542 269428568 -12765096 + AT_rich Low_complexity Low_complexity 1 26 0 1911 147 13 3 chr1 269429175 269429474 -12764190 + AluSx SINE Alu 1 302 -10 1302 208 104 25 chr1 269429477 269429795 -12763869 - MER2 DNA MER2_type 0 344 2 185 302 0 0 chr1 269430312 269430365 -12763299 - L2 LINE L2 0 3272 3220 2203 108 0 3 chr1 269430524 269430820 -12762844 + AluSg SINE Alu 1 295 -15 1023 183 84 15 chr1 269430849 269431051 -12762613 + AluJo SINE Alu 83 298 -14 262 392 34 7 chr1 269431051 269431199 -12762465 - L2 LINE L2 -244 3028 2877 315 27 0 0 chr1 269431628 269431665 -12761999 + AluSq SINE Alu 18 54 -248 1506 102 0 19 chr1 269431665 269431871 -12761793 + AluSq SINE Alu 97 298 -15 475 349 142 18 chr1 269431895 269432439 -12761225 - L2 LINE L2 -400 2914 2304 828 213 139 30 chr1 269432463 269432665 -12760999 - MER58A DNA MER1_type 0 224 1 200 352 111 63 chr1 269432666 269433084 -12760580 - L2 LINE L2 -1037 2277 1880 2345 80 3 0 chr1 269433084 269433372 -12760292 + AluSx SINE Alu 1 289 -23 200 352 111 63 chr1 269433372 269433839 -12759825 - L2 LINE L2 -1434 1880 1350 262 289 83 51 chr1 269433840 269433996 -12759668 + LTR67 LTR ERVL 2 162 -395 1964 133 7 3 chr1 269434692 269434978 -12758686 - AluSx SINE Alu -25 287 1 23 0 0 0 chr1 269436432 269436455 -12757209 + AT_rich Low_complexity Low_complexity 1 23 0 349 308 33 17 chr1 269436828 269436948 -12756716 - MIR SINE MIR -93 169 48 2332 57 0 3 chr1 269437272 269437594 -12756070 + AluY SINE Alu 1 321 0 444 335 30 30 chr1 269437714 269437881 -12755783 + MIR SINE MIR 22 188 -74 289 217 91 97 chr1 269438100 269438275 -12755389 - HAL1 LINE L1 -27 2480 2307 26 0 0 0 chr1 269439397 269439423 -12754241 + AT_rich Low_complexity Low_complexity 1 26 0 2389 94 0 0 chr1 269439462 269439770 -12753894 - AluSx SINE Alu -4 308 1 3713 86 22 10 chr1 269440760 269441269 -12752395 + L1MA3 LINE L1 5789 6303 -2 1065 181 39 0 chr1 269441320 269441502 -12752162 - MER5A DNA MER1_type 0 189 1 611 221 23 30 chr1 269441526 269441657 -12752007 - L1M4 LINE L1 -595 5583 5454 657 261 207 5 chr1 269441695 269442067 -12751597 + L2 LINE L2 1612 2058 -1256 194 227 120 0 chr1 269442045 269442120 -12751544 + L2 LINE L2 2982 3065 -248 * 936 131 0 29 chr1 269442134 269442271 -12751393 - FLAM_C SINE Alu 0 133 1 2099 124 0 34 chr1 269443025 269443161 -12750503 + AluSx SINE Alu 1 140 -172 2381 84 3 0 chr1 269443161 269443457 -12750207 + AluSp SINE Alu 1 297 -16 1151 121 0 39 chr1 269443460 269443642 -12750022 + AluSg/x SINE Alu 135 309 -1 901 148 0 15 chr1 269443768 269443903 -12749761 - FLAM_C SINE Alu 0 133 1 379 189 0 11 chr1 269445166 269445256 -12748408 + L1MA10 LINE L1 6246 6334 0 24 0 0 0 chr1 269446326 269446350 -12747314 + AT_rich Low_complexity Low_complexity 1 24 0 391 231 109 81 chr1 269446824 269446932 -12746732 - Charlie8 DNA MER1_type -113 228 124 2305 92 0 0 chr1 269446932 269447227 -12746437 - AluSx SINE Alu -17 295 1 391 231 109 81 chr1 269447227 269447339 -12746325 - Charlie8 DNA MER1_type -217 124 2 787 231 80 20 chr1 269449174 269449373 -12744291 + MIR SINE MIR 7 217 -45 748 240 116 4 chr1 269449983 269450216 -12743448 - MIR SINE MIR -3 259 1 2212 94 14 0 chr1 269450237 269450534 -12743130 + AluSq SINE Alu 1 301 -12 1946 144 7 0 chr1 269450541 269450826 -12742838 + AluSx SINE Alu 1 287 -25 2014 106 4 4 chr1 269451358 269451632 -12742032 + AluSg SINE Alu 20 293 -17 228 313 73 78 chr1 269452081 269452273 -12741391 + L2 LINE L2 3032 3222 -50 227 289 0 0 chr1 269452443 269452495 -12741169 + MIR SINE MIR 62 113 -149 189 277 46 15 chr1 269452603 269452668 -12740996 + MIR SINE MIR 126 192 -70 287 273 15 0 chr1 269452747 269452813 -12740851 - L2 LINE L2 -8 3264 3198 710 356 85 26 chr1 269452848 269453461 -12740203 - L2 LINE L2 -825 2489 1841 1692 100 10 116 chr1 269453549 269453850 -12739814 + AluSx SINE Alu 1 269 -43 30 0 0 0 chr1 269453853 269453883 -12739781 + AT_rich Low_complexity Low_complexity 1 30 0 510 206 211 1 chr1 269454159 269454337 -12739327 - MER63 DNA MER1_type 0 1688 1 21 0 0 0 chr1 269454755 269454776 -12738888 + AT_rich Low_complexity Low_complexity 1 21 0 265 273 162 0 chr1 269455422 269455521 -12738143 - MIR SINE MIR -128 134 20 319 287 28 19 chr1 269455975 269456083 -12737581 + L1ME LINE L1 374 482 -5914 3157 233 98 20 chr1 269456435 269457925 -12735739 + L1ME LINE L1 782 2346 -4060 2052 121 0 0 chr1 269457925 269458190 -12735474 + AluSq SINE Alu 1 265 -48 1696 221 101 50 chr1 269458190 269458976 -12734688 + L1ME LINE L1 2800 3625 -2781 * 2644 211 70 62 chr1 269458975 269459283 -12734381 + L1MB3 LINE L1 4197 4501 -1645 1941 167 0 0 chr1 269459283 269459577 -12734087 + AluSx SINE Alu 1 294 -18 2644 211 70 62 chr1 269459577 269459925 -12733739 + L1MB3 LINE L1 4501 4845 -1301 1738 168 62 17 chr1 269459925 269460342 -12733322 - L1MB8 LINE L1 -12 6166 5731 2644 211 70 62 chr1 269460342 269460734 -12732930 + L1MB3 LINE L1 4845 5255 -891 23 0 0 0 chr1 269460815 269460838 -12732826 + AT_rich Low_complexity Low_complexity 1 23 0 2361 97 3 0 chr1 269461390 269461690 -12731974 + AluSp SINE Alu 1 301 -12 3633 154 42 15 chr1 269461788 269462507 -12731157 + L1MB3 LINE L1 5426 6163 -20 2065 263 186 10 chr1 269462874 269463793 -12729871 + L2 LINE L2 1176 2262 -1052 989 168 0 32 chr1 269463793 269464013 -12729651 + L1MA10 LINE L1 6121 6333 -1 26 0 0 0 chr1 269464418 269464444 -12729220 + AT_rich Low_complexity Low_complexity 1 26 0 263 195 276 0 chr1 269464922 269465009 -12728655 + L2 LINE L2 3188 3298 -15 52 41 0 0 chr1 269465012 269465085 -12728579 + AT_rich Low_complexity Low_complexity 1 73 0 1332 149 9 5 chr1 269465776 269465991 -12727673 - AluJo SINE Alu -12 300 85 2020 140 3 0 chr1 269466334 269466620 -12727044 - AluSx SINE Alu -25 287 1 650 320 71 75 chr1 269467160 269467811 -12725853 - L2 LINE L2 -25 3247 2601 285 165 0 66 chr1 269469124 269469215 -12724449 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 2721 0 0 7 chr1 269469847 269470148 -12723516 + AluYa5 SINE Alu 1 299 -12 4901 159 57 14 chr1 269470644 269471704 -12721960 + L1MC2 LINE L1 5179 6282 -62 28 48 0 0 chr1 269471711 269471753 -12721911 + AT_rich Low_complexity Low_complexity 1 42 0 837 122 0 0 chr1 269471755 269471870 -12721794 - FLAM_C SINE Alu -17 116 2 370 143 29 0 chr1 269471871 269471941 -12721723 + L1MC2 LINE L1 6264 6335 -9 283 288 0 0 chr1 269471951 269472031 -12721633 - MER116 DNA Mariner 0 80 1 360 360 9 0 chr1 269472179 269472293 -12721371 + L2 LINE L2 3156 3270 -2 563 205 58 49 chr1 269472719 269472943 -12720721 + L1MC5 LINE L1 7660 7885 -76 301 280 0 0 chr1 269473017 269473110 -12720554 + L1MC4a LINE L1 5381 5473 -2335 1671 191 71 47 chr1 269473166 269473632 -12720032 + MLT1D LTR MaLR 24 500 -5 632 237 126 5 chr1 269473632 269473847 -12719817 + L1MC4a LINE L1 5566 5806 -2002 939 241 126 90 chr1 269474146 269474595 -12719069 + L1ME4a LINE L1 5213 5645 -476 1938 106 0 0 chr1 269474595 269474849 -12718815 - AluSx SINE Alu -25 287 34 939 241 126 90 chr1 269474849 269475241 -12718423 + L1ME4a LINE L1 5645 6087 -34 2317 102 0 0 chr1 269476443 269476737 -12716927 + AluSq SINE Alu 1 294 -19 353 200 0 53 chr1 269476924 269477019 -12716645 + MER58B DNA MER1_type 252 341 0 1786 153 24 107 chr1 269477101 269477560 -12716104 - MER68 LTR ERV1 -141 421 1 2163 126 0 0 chr1 269477911 269478205 -12715459 + AluSx SINE Alu 1 294 -18 3767 188 43 1 chr1 269478809 269479581 -12714083 + L1MB7 LINE L1 5371 6174 -10 2211 114 3 10 chr1 269479681 269479988 -12713676 - AluSx SINE Alu -7 305 1 186 277 43 0 chr1 269480571 269480618 -12713046 - L2 LINE L2 -3 3269 3221 2452 86 0 0 chr1 269480790 269481091 -12712573 + AluSc SINE Alu 1 301 -8 2174 132 7 0 chr1 269481501 269481805 -12711859 - AluSx SINE Alu -6 306 1 23 0 0 0 chr1 269482629 269482652 -12711012 + AT_rich Low_complexity Low_complexity 1 23 0 329 294 12 0 chr1 269483348 269483433 -12710231 + L1MC4a LINE L1 6513 6598 -1210 426 39 0 0 chr1 269483433 269483485 -12710179 + (TGGA)n Simple_repeat Simple_repeat 4 55 0 487 257 0 14 chr1 269483543 269483691 -12709973 + L1MC4 LINE L1 7897 8042 0 23 33 0 0 chr1 269484081 269484111 -12709553 + AT_rich Low_complexity Low_complexity 1 30 0 2037 141 0 0 chr1 269484616 269484906 -12708758 + AluSx SINE Alu 6 295 -17 2116 115 3 34 chr1 269484962 269485284 -12708380 + AluSx SINE Alu 1 312 0 1601 182 10 33 chr1 269486151 269486458 -12707206 - AluJo SINE Alu -10 302 3 1860 132 0 48 chr1 269486552 269486863 -12706801 + AluSx SINE Alu 1 296 -16 419 299 221 17 chr1 269486961 269487274 -12706390 + L2 LINE L2 2645 3011 -302 360 102 0 194 chr1 269487409 269487507 -12706157 + MADE1 DNA Mariner 2 80 0 2215 110 0 13 chr1 269488366 269488667 -12704997 + AluSx SINE Alu 1 297 -15 486 257 6 47 chr1 269488717 269488888 -12704776 + L1MC5 LINE L1 7701 7864 -97 2333 101 3 0 chr1 269488999 269489297 -12704367 - AluSx SINE Alu -13 299 1 323 224 48 24 chr1 269489403 269489528 -12704136 + L1ME4a LINE L1 5993 6120 -1 21 0 0 0 chr1 269489537 269489558 -12704106 + AT_rich Low_complexity Low_complexity 1 21 0 793 194 5 109 chr1 269490362 269490436 -12703228 + MER5A DNA MER1_type 4 84 -105 2306 86 26 0 chr1 269490436 269490739 -12702925 + AluSx SINE Alu 1 311 -1 793 194 5 109 chr1 269490739 269490865 -12702799 + MER5A DNA MER1_type 84 183 -6 1982 271 119 18 chr1 269491390 269492339 -12701325 + HAL1 LINE L1 1 1045 -1462 1713 174 7 11 chr1 269492340 269492627 -12701037 + AluJo SINE Alu 1 286 -26 387 0 0 0 chr1 269492627 269492670 -12700994 + (CA)n Simple_repeat Simple_repeat 2 44 0 1337 221 100 30 chr1 269492707 269493168 -12700496 + HAL1 LINE L1 1166 1658 -849 719 242 165 33 chr1 269493176 269493569 -12700095 + L1MCc LINE L1 31 475 -5948 414 229 257 27 chr1 269494107 269494399 -12699265 + L1MCc LINE L1 939 1297 -5126 416 237 81 37 chr1 269494408 269494651 -12699013 + L1MCc LINE L1 1348 1614 -4897 * 980 279 155 8 chr1 269494643 269495126 -12698538 + HAL1 LINE L1 1636 2189 -318 2022 97 4 0 chr1 269495285 269495564 -12698100 + AluSp SINE Alu 1 280 -33 207 0 0 0 chr1 269495565 269495588 -12698076 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 34 55 0 0 chr1 269496702 269496757 -12696907 + GC_rich Low_complexity Low_complexity 1 55 0 282 350 8 8 chr1 269497836 269497953 -12695711 - MER5A DNA MER1_type -19 170 54 2158 106 56 56 chr1 269497999 269498376 -12695288 - MER51B LTR ERV1 0 377 1 3135 208 53 36 chr1 269498987 269499809 -12693855 + L1ME2 LINE L1 5320 6155 -9 2219 91 0 3 chr1 269499810 269500108 -12693556 + AluSc SINE Alu 1 297 -12 261 0 0 0 chr1 269500142 269500171 -12693493 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 632 299 40 84 chr1 269500459 269501165 -12692499 + L2 LINE L2 1971 2645 -669 183 321 37 25 chr1 269501197 269501278 -12692386 + L2 LINE L2 2987 3068 -204 249 297 41 126 chr1 269501459 269501849 -12691815 + L2 LINE L2 2896 3252 -20 2106 102 0 3 chr1 269501851 269502146 -12691518 - AluSx SINE Alu -18 294 1 2139 109 20 0 chr1 269502269 269502562 -12691102 - AluSx SINE Alu -13 299 1 504 294 40 40 chr1 269502588 269502789 -12690875 - MIR SINE MIR 0 262 62 273 180 0 49 chr1 269502886 269502947 -12690717 + L2 LINE L2 3215 3272 0 2258 92 3 3 chr1 269502998 269503302 -12690362 + AluSx SINE Alu 1 304 -8 977 171 1 12 chr1 269503831 269504016 -12689648 + MER1B DNA MER1_type 1 151 -146 558 38 0 51 chr1 269504018 269504097 -12689567 + MER1B DNA MER1_type 259 333 0 2201 87 0 0 chr1 269504175 269504461 -12689203 + AluSq SINE Alu 3 288 -25 219 36 0 0 chr1 269504464 269504492 -12689172 + (CAAAT)n Simple_repeat Simple_repeat 2 29 0 1670 151 27 10 chr1 269504928 269505220 -12688444 + AluJo SINE Alu 1 297 -15 621 258 103 114 chr1 269505837 269506377 -12687287 + MLT1L LTR MaLR 1 478 -33 225 272 44 66 chr1 269506596 269506732 -12686932 - MER5A DNA MER1_type -30 159 27 363 262 7 38 chr1 269506597 269506714 -12686950 + MER5B DNA MER1_type 43 145 -33 1427 206 21 34 chr1 269508177 269508502 -12685162 + MLT2D LTR ERVL 89 409 -5 2156 93 0 47 chr1 269508622 269508970 -12684694 - AluSp SINE Alu 0 313 1 700 78 0 0 chr1 269508993 269509083 -12684581 - AluSg/x SINE Alu -26 284 195 297 0 0 0 chr1 269509574 269509607 -12684057 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr1 269509606 269509631 -12684033 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 216 0 0 0 chr1 269510124 269510148 -12683516 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2202 86 4 0 chr1 269510151 269510431 -12683233 - AluSp SINE Alu -32 281 1 204 220 308 33 chr1 269510600 269510691 -12682973 - L2 LINE L2 -8 3264 3149 1945 185 11 8 chr1 269510692 269511054 -12682610 - MLT1A1 LTR MaLR 0 365 3 1904 138 13 13 chr1 269511087 269511391 -12682273 - AluSx SINE Alu -8 304 1 3754 106 43 0 chr1 269511509 269512040 -12681624 + MER41A LTR ERV1 1 554 0 2666 157 86 0 chr1 269512446 269512936 -12680728 - L1MB3 LINE L1 -12 6171 5640 239 222 0 0 chr1 269513190 269513244 -12680420 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 290 374 79 13 chr1 269513260 269513487 -12680177 - L2 LINE L2 -577 2737 2496 630 154 15 15 chr1 269514221 269514357 -12679307 + CT-rich Low_complexity Low_complexity 4 139 0 2178 112 0 6 chr1 269514363 269514677 -12678987 - AluSx SINE Alu 0 312 1 1317 149 80 12 chr1 269514836 269515085 -12678579 - AluJb SINE Alu -8 304 39 294 227 47 39 chr1 269515256 269515384 -12678280 - L1MC4 LINE L1 0 8042 7914 322 145 16 32 chr1 269515504 269515566 -12678098 + LTR7 LTR ERV1 390 450 0 354 247 11 11 chr1 269515568 269515661 -12678003 - L1MC4 LINE L1 -192 7850 7758 1004 169 193 63 chr1 269515663 269515995 -12677669 - LTR37A LTR ERV1 -2 424 50 927 239 30 0 chr1 269516013 269516214 -12677450 - MER58A DNA MER1_type -14 210 4 330 80 0 20 chr1 269516214 269516264 -12677400 - LTR37A LTR ERV1 -377 49 1 1183 182 61 28 chr1 269516282 269516463 -12677201 + MLT1B LTR MaLR 1 175 -292 843 158 0 8 chr1 269516463 269516596 -12677068 + FLAM_A SINE Alu 2 133 0 1183 182 61 28 chr1 269516596 269516791 -12676873 + MLT1B LTR MaLR 175 401 -66 387 232 58 36 chr1 269516954 269517092 -12676572 - MER103 DNA DNA -9 157 17 494 302 26 55 chr1 269518697 269518945 -12674719 - MIR SINE MIR -8 254 14 345 324 0 20 chr1 269518953 269519055 -12674609 - L3 LINE CR1 -1 1576 1477 202 290 75 0 chr1 269519453 269519546 -12674118 - MIR SINE MIR -60 148 49 2030 87 0 0 chr1 269519706 269519972 -12673692 + AluSc SINE Alu 1 266 -43 186 71 0 0 chr1 269519973 269520001 -12673663 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 324 0 0 0 chr1 269520598 269520634 -12673030 + (CA)n Simple_repeat Simple_repeat 2 37 0 2076 118 0 31 chr1 269520823 269521144 -12672520 + AluSx SINE Alu 1 311 -1 2678 88 14 8 chr1 269522631 269522993 -12670671 + THE1B LTR MaLR 1 364 0 1664 155 8 41 chr1 269522994 269523349 -12670315 - MER4A LTR ERV1 0 664 263 446 169 90 0 chr1 269523351 269523440 -12670224 - MER4A LTR ERV1 -566 98 2 256 267 75 50 chr1 269523462 269523582 -12670082 + MIR SINE MIR 20 142 -66 2070 197 40 16 chr1 269523603 269524055 -12669609 + MLT1C LTR MaLR 5 467 0 197 308 66 99 chr1 269524067 269524278 -12669386 + MIR SINE MIR 13 216 -46 712 113 0 9 chr1 269524558 269524625 -12669039 + L1PB1 LINE L1 6038 6104 -47 2118 96 3 3 chr1 269524625 269524918 -12668746 + AluSc SINE Alu 1 293 -16 180 0 0 0 chr1 269524924 269524944 -12668720 + (CAA)n Simple_repeat Simple_repeat 2 21 0 712 113 0 9 chr1 269524944 269524984 -12668680 + L1PB1 LINE L1 6109 6151 0 195 266 31 47 chr1 269525006 269525070 -12668594 - L2 LINE L2 -2850 464 402 904 125 14 0 chr1 269525218 269525362 -12668302 - AluSg/x SINE Alu -11 301 156 1195 80 61 0 chr1 269525869 269526032 -12667632 + MER30 DNA MER1_type 2 174 -56 189 241 0 0 chr1 269526576 269526630 -12667034 + CT-rich Low_complexity Low_complexity 3 56 0 284 347 10 0 chr1 269526694 269526792 -12666872 + L3 LINE CR1 1478 1576 -1 200 229 21 0 chr1 269526911 269526959 -12666705 - L3 LINE CR1 -1 1576 1528 2276 77 3 0 chr1 269526966 269527263 -12666401 - AluSc SINE Alu -11 298 1 551 223 81 20 chr1 269527283 269527431 -12666233 + MIR SINE MIR 49 205 -57 2375 74 3 0 chr1 269527582 269527893 -12665771 + AluSp SINE Alu 1 312 -1 1426 95 0 58 chr1 269528751 269528913 -12664751 - L1MA4 LINE L1 -57 6243 6098 2093 100 0 0 chr1 269528913 269529252 -12664412 - AluSg SINE Alu 0 310 1 1426 95 0 58 chr1 269529252 269529332 -12664332 - L1MA4 LINE L1 -202 6098 6015 2053 117 0 0 chr1 269529347 269529662 -12664002 - AluSx SINE Alu 0 315 1 2005 113 0 7 chr1 269529687 269529971 -12663693 + AluSq SINE Alu 1 282 -31 3530 144 21 63 chr1 269529979 269530111 -12663553 - L1MA4 LINE L1 -176 6124 5988 1961 117 0 0 chr1 269530111 269530418 -12663246 - AluSx SINE Alu 0 307 1 3530 144 21 63 chr1 269530418 269530999 -12662665 - L1MA4 LINE L1 -312 5988 5440 2172 103 0 13 chr1 269531608 269531909 -12661755 + AluSx SINE Alu 1 297 -15 2479 38 3 29 chr1 269531944 269532260 -12661404 + AluY SINE Alu 1 308 -3 544 279 15 0 chr1 269533009 269533145 -12660519 - MIR3 SINE MIR -7 201 64 2061 95 0 3 chr1 269533179 269533489 -12660175 - AluSx SINE Alu 0 309 1 35 83 0 0 chr1 269534614 269534698 -12658966 + AT_rich Low_complexity Low_complexity 1 84 0 1968 147 0 0 chr1 269534806 269535118 -12658546 - AluSx SINE Alu 0 312 1 321 156 10 135 chr1 269535152 269535187 -12658477 - L1MA9 LINE L1 -33 6279 6241 2182 85 10 3 chr1 269535187 269535481 -12658183 - AluSg SINE Alu -13 297 2 321 156 10 135 chr1 269535481 269535541 -12658123 - L1MA9 LINE L1 -71 6241 6196 326 315 165 8 chr1 269536222 269536349 -12657315 + L2 LINE L2 3126 3272 0 2224 95 13 0 chr1 269536456 269536761 -12656903 + AluSc SINE Alu 1 309 0 487 325 19 7 chr1 269536948 269537102 -12656562 + L2 LINE L2 3154 3309 -4 1175 180 23 0 chr1 269537985 269538202 -12655462 + MER50 LTR ERV1 1 222 -512 * 1441 175 0 86 chr1 269538189 269538288 -12655376 + MER50 LTR ERV1 447 553 -181 1889 111 28 0 chr1 269538288 269538577 -12655087 - AluSx SINE Alu -15 297 1 1441 175 0 86 chr1 269538577 269538792 -12654872 + MER50 LTR ERV1 553 734 0 195 316 0 0 chr1 269538872 269539011 -12654653 + (TG)n Simple_repeat Simple_repeat 1 139 0 718 263 104 3 chr1 269539644 269539887 -12653777 - MIR SINE MIR -3 259 7 248 311 56 0 chr1 269540426 269540516 -12653148 + MIR SINE MIR 41 135 -73 2211 110 3 0 chr1 269540537 269540847 -12652817 - AluSx SINE Alu -1 311 1 189 0 0 0 chr1 269542304 269542325 -12651339 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 378 0 0 0 chr1 269542324 269542366 -12651298 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 405 0 0 0 chr1 269542365 269542410 -12651254 + (GA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr1 269543114 269543135 -12650529 + AT_rich Low_complexity Low_complexity 1 21 0 222 278 0 0 chr1 269543501 269543555 -12650109 - MIR SINE MIR -123 139 86 236 298 58 0 chr1 269544260 269544364 -12649300 - L1ME4a LINE L1 -3 6118 6009 2018 107 14 0 chr1 269544473 269544763 -12648901 - AluSx SINE Alu -18 294 1 2171 153 184 63 chr1 269547448 269548017 -12645647 + MLT1E1 LTR MaLR 3 640 -14 204 172 0 172 chr1 269548491 269548555 -12645109 + MIR SINE MIR 206 258 -4 1402 189 26 42 chr1 269548611 269548917 -12644747 + AluJo SINE Alu 3 303 -9 33 0 0 0 chr1 269548917 269548950 -12644714 + AT_rich Low_complexity Low_complexity 1 33 0 331 327 90 19 chr1 269549384 269549540 -12644124 + MIR SINE MIR 96 262 0 462 49 0 0 chr1 269550572 269550596 -12643068 + (CA)n Simple_repeat Simple_repeat 1 85 0 462 49 0 0 chr1 269550596 269550657 -12643007 + (CA)n Simple_repeat Simple_repeat 2 62 0 225 219 0 0 chr1 269550909 269550982 -12642682 + GA-rich Low_complexity Low_complexity 1 73 0 199 315 37 46 chr1 269551218 269551326 -12642338 - MIR SINE MIR -42 220 114 189 0 0 0 chr1 269553262 269553283 -12640381 + (CTG)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr1 269555031 269555058 -12638606 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 224 363 89 0 chr1 269555660 269555795 -12637869 + MIR SINE MIR 89 235 -27 441 315 25 6 chr1 269556780 269556942 -12636722 + MIR SINE MIR 24 188 -74 262 250 164 35 chr1 269559200 269559316 -12634348 + L2 LINE L2 3180 3310 -3 328 254 131 16 chr1 269559792 269559914 -12633750 + MIR SINE MIR 115 250 -12 241 284 84 21 chr1 269559974 269560069 -12633595 + MIR SINE MIR 91 191 -71 1774 181 50 64 chr1 269560308 269560728 -12632936 + MLT2D LTR ERVL 1 414 0 412 209 47 0 chr1 269560822 269560951 -12632713 + MER74A LTR ERVL 297 431 -127 318 230 0 35 chr1 269561607 269561694 -12631970 - MIR3 SINE MIR 0 208 125 214 119 0 68 chr1 269563050 269563109 -12630555 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 243 0 0 0 chr1 269563528 269563555 -12630109 + (TG)n Simple_repeat Simple_repeat 1 27 0 834 148 39 87 chr1 269564884 269564920 -12628744 - Charlie5 DNA MER1_type -5 2580 2544 1594 164 73 0 chr1 269564920 269565207 -12628457 - AluJo SINE Alu -4 308 1 834 148 39 87 chr1 269565207 269565400 -12628264 - Charlie5 DNA MER1_type -41 2544 2362 348 197 0 0 chr1 269565427 269565549 -12628115 + GA-rich Low_complexity Low_complexity 1 122 0 325 291 126 55 chr1 269565700 269565899 -12627765 + MIR SINE MIR 25 237 -25 1229 152 94 0 chr1 269566213 269566437 -12627227 + L1MA3 LINE L1 6061 6305 0 234 264 0 0 chr1 269566456 269566468 -12627196 + MER3 DNA MER1_type 38 49 -160 900 190 60 0 chr1 269566468 269566652 -12627012 - MER3 DNA MER1_type -2 207 13 748 241 53 72 chr1 269566715 269566801 -12626863 + MIR SINE MIR 2 88 -174 2091 110 3 7 chr1 269566801 269567100 -12626564 - AluSx SINE Alu -14 298 1 748 241 53 72 chr1 269567100 269567275 -12626389 + MIR SINE MIR 88 258 -4 221 306 0 16 chr1 269567364 269567426 -12626238 - L2 LINE L2 -225 3047 2987 265 372 56 56 chr1 269567428 269567563 -12626101 - L2 LINE L2 0 3272 3135 2313 165 47 24 chr1 269567563 269567987 -12625677 + Tigger2a DNA MER2_type 1 434 0 265 372 56 56 chr1 269567987 269568117 -12625547 - L2 LINE L2 -136 3136 3007 2231 81 7 3 chr1 269568394 269568692 -12624972 + AluSx SINE Alu 2 300 -12 283 253 11 32 chr1 269569399 269569494 -12624170 - MER81 DNA DNA -2 112 20 2116 101 0 3 chr1 269569951 269570248 -12623416 - AluSx SINE Alu -16 296 1 1771 154 0 7 chr1 269570257 269570549 -12623115 - AluJo SINE Alu -22 290 1 303 304 24 16 chr1 269572428 269572553 -12621111 - MIR SINE MIR -117 145 20 833 135 8 0 chr1 269573212 269573338 -12620326 + FLAM_C SINE Alu 7 133 -10 191 32 65 0 chr1 269574448 269574479 -12619185 + T-rich Low_complexity Low_complexity 3 35 0 572 105 23 0 chr1 269574586 269574672 -12618992 - AluJ/FLAM SINE Alu -224 88 1 865 224 140 29 chr1 269574672 269574944 -12618720 - MER21B LTR ERV1 -547 316 15 253 237 0 0 chr1 269574944 269575003 -12618661 + (TA)n Simple_repeat Simple_repeat 1 59 0 374 322 0 0 chr1 269575004 269575094 -12618570 - L1MC4 LINE L1 -1339 6703 6614 373 250 0 43 chr1 269575022 269575114 -12618550 + L1MC4 LINE L1 6616 6703 -1339 * 369 250 34 11 chr1 269575106 269575194 -12618470 - L1MC4 LINE L1 -1339 6703 6614 * 319 289 0 41 chr1 269575145 269575242 -12618422 + L1MC4 LINE L1 6614 6706 -1336 * 261 0 0 0 chr1 269575244 269575273 -12618391 + (TG)n Simple_repeat Simple_repeat 2 30 0 262 322 40 50 chr1 269575448 269575647 -12618017 + MIR SINE MIR 66 262 0 2175 105 0 3 chr1 269576134 269576430 -12617234 + AluSq SINE Alu 1 295 -18 275 350 44 28 chr1 269577646 269577752 -12615912 - MER5A DNA MER1_type -6 183 71 1559 155 3 98 chr1 269577752 269578069 -12615595 - AluJb SINE Alu -15 287 1 275 350 44 28 chr1 269578069 269578142 -12615522 - MER5A DNA MER1_type -118 71 1 467 169 0 55 chr1 269578381 269578518 -12615146 + MER45 DNA AcHobo 60 1579 -2 1473 136 110 22 chr1 269579082 269579355 -12614309 + AluSx SINE Alu 1 297 -15 338 273 75 12 chr1 269580225 269580386 -12613278 - L1ME4a LINE L1 -4 6117 5947 2209 97 7 0 chr1 269580389 269580687 -12612977 - AluSq SINE Alu -13 300 1 771 248 120 41 chr1 269580819 269581328 -12612336 - L1ME4a LINE L1 -38 6083 5535 199 309 85 11 chr1 269581353 269581447 -12612217 - MIR SINE MIR -97 165 65 261 184 145 0 chr1 269581483 269581559 -12612105 - MIR SINE MIR -52 210 124 21 0 0 0 chr1 269581742 269581763 -12611901 + AT_rich Low_complexity Low_complexity 1 21 0 361 217 65 22 chr1 269582644 269582736 -12610928 + MIR SINE MIR 66 161 -101 513 284 158 0 chr1 269582998 269583213 -12610451 - MIR SINE MIR -2 260 12 558 0 0 0 chr1 269583739 269583801 -12609863 + (TTTTA)n Simple_repeat Simple_repeat 3 64 0 1867 136 4 0 chr1 269583806 269584085 -12609579 - AluSx SINE Alu -32 280 1 632 205 8 8 chr1 269584257 269584379 -12609285 + MSTD LTR MaLR 1 122 -274 1252 201 44 27 chr1 269585396 269585689 -12607975 - AluJo SINE Alu -14 298 1 2899 82 0 0 chr1 269586706 269587070 -12606594 - THE1B LTR MaLR 0 364 1 249 222 0 0 chr1 269587968 269588031 -12605633 + (TG)n Simple_repeat Simple_repeat 1 63 0 214 200 60 20 chr1 269589172 269589222 -12604442 + MIR SINE MIR 123 174 -88 327 85 0 0 chr1 269589985 269590032 -12603632 + (TG)n Simple_repeat Simple_repeat 1 47 0 438 344 54 5 chr1 269590317 269590503 -12603161 - MIR SINE MIR -19 243 49 205 365 118 18 chr1 269591413 269591583 -12602081 + L2 LINE L2 3086 3272 0 213 121 0 0 chr1 269592837 269592870 -12600794 + (TTCTCC)n Simple_repeat Simple_repeat 4 36 0 235 250 0 0 chr1 269592955 269593007 -12600657 + L2 LINE L2 3221 3272 0 2143 98 10 7 chr1 269593052 269593357 -12600307 + AluSg SINE Alu 1 306 -4 245 301 179 24 chr1 269594498 269594621 -12599043 + MIR SINE MIR 71 212 -50 426 275 91 80 chr1 269595565 269596081 -12597583 + MLT1K LTR MaLR 62 610 -5 2287 164 53 27 chr1 269596131 269596581 -12597083 + MLT2C2 LTR ERVL 3 464 0 275 379 6 41 chr1 269598405 269598417 -12595247 - MIR3 SINE MIR -39 169 158 2135 99 7 3 chr1 269598417 269598720 -12594944 + AluSp SINE Alu 1 304 -9 275 379 6 41 chr1 269598720 269598876 -12594788 - MIR3 SINE MIR -50 158 7 188 264 11 0 chr1 269598885 269598972 -12594692 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 316 327 173 0 chr1 269599074 269599178 -12594486 + MIR3 SINE MIR 5 126 -82 188 231 0 96 chr1 269599292 269599344 -12594320 + L2 LINE L2 3192 3238 -75 449 271 100 50 chr1 269599694 269599824 -12593840 + L1M4 LINE L1 4930 5052 -1094 2208 98 0 7 chr1 269599824 269600119 -12593545 - AluSc SINE Alu -16 293 1 449 271 100 50 chr1 269600119 269600228 -12593436 + L1M4 LINE L1 5052 5181 -965 575 231 98 35 chr1 269600982 269601185 -12592479 - MIR SINE MIR 0 262 47 957 194 73 0 chr1 269601586 269601777 -12591887 - MIR SINE MIR -25 237 33 1097 287 30 28 chr1 269601984 269602416 -12591248 + LTR16A LTR ERVL 3 435 -15 195 368 45 31 chr1 269602928 269603151 -12590513 + L2 LINE L2 2592 2817 -497 215 343 146 15 chr1 269603318 269603455 -12590209 + L2 LINE L2 3109 3263 -9 1833 109 20 37 chr1 269603786 269604103 -12589561 + AluSg SINE Alu 1 312 0 3209 239 45 35 chr1 269604929 269605894 -12587770 + Zaphod DNA AcHobo 20 993 -3038 1281 214 44 29 chr1 269605890 269606273 -12587391 + Zaphod DNA AcHobo 3596 3984 -47 * 2035 137 0 10 chr1 269606336 269606650 -12587014 - AluSx SINE Alu -1 311 1 2289 101 0 0 chr1 269606668 269606975 -12586689 - AluSc SINE Alu -2 307 1 2047 108 14 0 chr1 269606993 269607289 -12586375 - AluSq SINE Alu -13 300 1 460 241 98 0 chr1 269607296 269607429 -12586235 - MIR SINE MIR -8 254 109 897 163 34 45 chr1 269608151 269608329 -12585335 - FRAM SINE Alu 0 176 1 2227 92 20 0 chr1 269608511 269608814 -12584850 + AluSg SINE Alu 1 309 -1 255 278 0 0 chr1 269609333 269609387 -12584277 + polypyrimidine Low_complexity Low_complexity 1 54 0 180 0 0 0 chr1 269609403 269609423 -12584241 + (CA)n Simple_repeat Simple_repeat 2 21 0 180 286 0 18 chr1 269609429 269609485 -12584179 - L2 LINE L2 -39 3233 3179 480 252 19 0 chr1 269609518 269609621 -12584043 + MER5A DNA MER1_type 9 113 -76 187 250 16 47 chr1 269610731 269610795 -12582869 + L2 LINE L2 3200 3261 -11 7574 35 0 6 chr1 269611413 269612520 -12581144 - L1PA4 LINE L1 -3 6152 5047 689 216 30 129 chr1 269613442 269613673 -12579991 + MIR SINE MIR 7 210 -52 1551 183 7 13 chr1 269613673 269613974 -12579690 - AluJo SINE Alu -13 299 1 689 216 30 129 chr1 269613974 269614006 -12579658 + MIR SINE MIR 210 244 -18 438 297 21 21 chr1 269615327 269615472 -12578192 - MIR SINE MIR -98 164 20 554 250 152 34 chr1 269616631 269616835 -12576829 + MIR SINE MIR 12 239 -23 493 233 0 92 chr1 269616978 269617141 -12576523 + MLT1E2 LTR MaLR 10 157 -469 307 211 39 29 chr1 269617393 269617497 -12576167 + MLT1E2 LTR MaLR 201 305 -200 2477 27 0 7 chr1 269618058 269618358 -12575306 - AluY SINE Alu -13 298 1 207 0 0 0 chr1 269618372 269618395 -12575269 + (TA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr1 269618706 269618730 -12574934 + (T)n Simple_repeat Simple_repeat 1 24 0 865 148 0 125 chr1 269620453 269620669 -12572995 - MER53 DNA DNA 0 189 1 201 133 0 0 chr1 269620951 269620981 -12572683 + L2 LINE L2 3266 3295 -18 260 267 85 80 chr1 269621592 269621768 -12571896 - MIR SINE MIR -9 253 77 357 273 80 53 chr1 269622117 269622304 -12571360 + MIR3 SINE MIR 9 200 -8 309 281 34 0 chr1 269622393 269622482 -12571182 - L2 LINE L2 0 3272 3181 426 277 15 8 chr1 269623183 269623313 -12570351 - MER94 DNA DNA -2 132 2 403 223 97 0 chr1 269623895 269623998 -12569666 - MER81 DNA DNA 0 114 2 598 301 125 28 chr1 269624394 269624746 -12568918 - L2 LINE L2 -40 3273 2888 1102 199 116 157 chr1 269624801 269624870 -12568794 - MLT1A1 LTR MaLR 0 396 326 1837 154 3 6 chr1 269624870 269625182 -12568482 + AluSx SINE Alu 1 311 -1 1102 199 116 157 chr1 269625182 269625525 -12568139 - MLT1A1 LTR MaLR -70 326 1 1221 293 75 19 chr1 269625525 269626003 -12567661 - L2 LINE L2 -522 2792 2288 3039 152 58 26 chr1 269626016 269626371 -12567293 + L1MB3 LINE L1 5559 5942 -241 2320 70 3 3 chr1 269626371 269626669 -12566995 + AluY SINE Alu 1 298 -13 3039 152 58 26 chr1 269626669 269626919 -12566745 + L1MB3 LINE L1 5942 6183 0 2204 272 35 20 chr1 269628187 269628347 -12565317 + MER69 DNA AcHobo 1 157 -2369 2163 117 3 0 chr1 269628347 269628647 -12565017 + AluSx SINE Alu 1 301 -11 2204 272 35 20 chr1 269628647 269629136 -12564528 + MER69 DNA AcHobo 157 660 -1866 3579 40 16 0 chr1 269629136 269629565 -12564099 + L1PA5 LINE L1 5716 6151 -3 26 0 0 0 chr1 269629565 269629591 -12564073 + AT_rich Low_complexity Low_complexity 1 26 0 303 28 0 0 chr1 269630702 269630738 -12562926 + (CA)n Simple_repeat Simple_repeat 2 37 0 1961 128 0 0 chr1 269633432 269633737 -12559927 - AluSx SINE Alu 0 305 1 559 279 29 29 chr1 269634458 269634630 -12559034 + MIR SINE MIR 34 205 -57 511 241 60 60 chr1 269636205 269636371 -12557293 + MIR SINE MIR 20 185 -77 499 250 109 0 chr1 269636448 269636576 -12557088 - MER63 DNA MER1_type -294 768 1 29 0 0 0 chr1 269637037 269637066 -12556598 + AT_rich Low_complexity Low_complexity 1 29 0 334 273 10 50 chr1 269637099 269637198 -12556466 - MIR SINE MIR -122 140 46 2090 174 14 3 chr1 269637337 269637698 -12555966 - MLT1A1 LTR MaLR 0 365 1 383 214 106 88 chr1 269639342 269639455 -12554209 + MIR SINE MIR 48 162 -100 882 180 51 88 chr1 269639455 269639672 -12553992 + MER63A DNA MER1_type 1 209 -1 383 214 106 88 chr1 269639672 269639755 -12553909 + MIR SINE MIR 162 242 -20 186 308 63 63 chr1 269641157 269641300 -12552364 - L2 LINE L2 -225 3047 2905 1670 184 0 9 chr1 269641438 269641753 -12551911 + AluJo SINE Alu 1 312 0 1953 132 7 0 chr1 269641997 269642286 -12551378 - AluSx SINE Alu -21 291 1 1292 211 50 84 chr1 269642310 269642750 -12550914 - L1ME2 LINE L1 -8 6156 5732 184 318 61 53 chr1 269642776 269642908 -12550756 + L2 LINE L2 3136 3268 -4 207 69 0 0 chr1 269643753 269643782 -12549882 + (TG)n Simple_repeat Simple_repeat 1 29 0 201 196 0 0 chr1 269643966 269644012 -12549652 + (TTA)n Simple_repeat Simple_repeat 2 47 0 182 305 183 0 chr1 269644012 269644094 -12549570 - MIR SINE MIR -62 146 50 180 273 11 91 chr1 269644305 269644393 -12549271 + MIR3 SINE MIR 121 201 -7 184 282 0 0 chr1 269645844 269645883 -12547781 + L2 LINE L2 3148 3186 -86 186 248 368 0 chr1 269645951 269646068 -12547596 - MIR SINE MIR -90 172 13 2310 77 3 10 chr1 269646565 269646878 -12546786 + AluY SINE Alu 1 311 0 291 351 68 14 chr1 269647885 269648033 -12545631 - L2 LINE L2 -2 3270 3115 279 0 0 0 chr1 269648147 269648178 -12545486 + (TG)n Simple_repeat Simple_repeat 1 31 0 2396 65 3 19 chr1 269648989 269649299 -12544365 - AluY SINE Alu -6 305 1 28 29 0 0 chr1 269649738 269649773 -12543891 + AT_rich Low_complexity Low_complexity 1 35 0 1582 264 147 42 chr1 269649865 269650443 -12543221 + L2 LINE L2 2282 2798 -515 2157 116 7 0 chr1 269650443 269650920 -12542744 - AluSq SINE Alu 0 484 6 1582 264 147 42 chr1 269650920 269651107 -12542557 + L2 LINE L2 2798 2964 -349 2267 102 0 13 chr1 269651107 269651422 -12542242 - AluY SINE Alu 0 311 1 1582 264 147 42 chr1 269651422 269651562 -12542102 + L2 LINE L2 2964 3308 -5 452 229 42 72 chr1 269651583 269651749 -12541915 + MIR SINE MIR 9 169 -93 207 208 42 0 chr1 269651727 269651775 -12541889 + L2 LINE L2 3216 3265 -7 * 258 365 10 0 chr1 269652370 269652474 -12541190 + L3 LINE CR1 1376 1480 -97 1611 163 39 14 chr1 269652733 269653016 -12540648 + AluJo SINE Alu 1 290 -22 231 114 0 0 chr1 269653021 269653056 -12540608 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 263 179 60 0 chr1 269653506 269653573 -12540091 + CT-rich Low_complexity Low_complexity 2 72 0 2491 82 0 0 chr1 269653673 269653977 -12539687 - AluSg SINE Alu -6 304 1 2321 103 0 0 chr1 269654469 269654761 -12538903 + AluSg SINE Alu 1 292 -18 223 209 23 0 chr1 269655201 269655244 -12538420 + L2 LINE L2 3224 3267 -5 180 331 86 36 chr1 269655561 269655700 -12537964 - L2 LINE L2 -2 3270 3125 276 304 137 25 chr1 269656031 269656192 -12537472 + MIR SINE MIR 77 255 -7 984 272 76 56 chr1 269656864 269657385 -12536279 + L2 LINE L2 2644 3153 -160 2359 86 0 3 chr1 269657385 269657675 -12535989 + AluSx SINE Alu 1 289 -23 192 111 0 0 chr1 269657678 269657714 -12535950 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 984 272 76 56 chr1 269657714 269657849 -12535815 + L2 LINE L2 3154 3310 -3 643 239 0 0 chr1 269657904 269658021 -12535643 - FRAM SINE Alu -43 133 17 525 294 95 12 chr1 269658064 269658295 -12535369 - MIR SINE MIR -12 250 3 677 303 117 26 chr1 269658501 269658920 -12534744 + L2 LINE L2 2624 3117 -196 1895 134 14 10 chr1 269658920 269659211 -12534453 - AluJo SINE Alu -20 292 1 677 303 117 26 chr1 269659211 269659405 -12534259 + L2 LINE L2 3117 3292 -21 195 224 20 41 chr1 269662510 269662559 -12531105 - MIR SINE MIR -73 135 88 300 294 0 0 chr1 269663042 269663110 -12530554 + MIR SINE MIR 36 103 -105 2234 80 28 0 chr1 269663306 269663592 -12530072 - AluSg SINE Alu -16 294 1 302 183 14 0 chr1 269667414 269667485 -12526179 + CT-rich Low_complexity Low_complexity 1 72 0 360 43 0 0 chr1 269667828 269667874 -12525790 + (CA)n Simple_repeat Simple_repeat 1 46 0 181 367 0 0 chr1 269672614 269672693 -12520971 + MIR SINE MIR 59 137 -71 342 0 0 0 chr1 269673220 269673258 -12520406 + (CA)n Simple_repeat Simple_repeat 1 38 0 239 177 242 0 chr1 269674891 269674953 -12518711 + L2 LINE L2 3123 3199 -73 290 313 78 9 chr1 269675013 269675128 -12518536 + L2 LINE L2 3125 3247 -25 2249 119 0 10 chr1 269675243 269675554 -12518110 - AluSc SINE Alu -1 308 1 307 304 156 30 chr1 269675824 269676061 -12517603 + L2 LINE L2 2124 2390 -924 272 234 123 64 chr1 269676777 269676948 -12516716 + L3b LINE CR1 1202 1382 -201 197 0 71 0 chr1 269676980 269677008 -12516656 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 714 279 6 17 chr1 269678102 269678281 -12515383 + MER5B DNA MER1_type 2 178 0 2316 100 0 3 chr1 269679031 269679330 -12514334 - AluSg SINE Alu -12 298 1 1849 168 7 10 chr1 269679480 269679778 -12513886 + AluJo SINE Alu 1 297 -15 414 227 163 7 chr1 269679780 269679921 -12513743 - MIR SINE MIR 0 262 100 271 339 24 16 chr1 269679927 269680054 -12513610 - L2 LINE L2 -788 2526 2399 464 262 170 27 chr1 269682269 269682637 -12511027 + L2 LINE L2 2628 3069 -244 1976 170 8 24 chr1 269682672 269682974 -12510690 - MLT1A1 LTR MaLR -1 364 68 2518 104 31 17 chr1 269682974 269683331 -12510333 + THE1B LTR MaLR 3 364 0 1976 170 8 24 chr1 269683331 269683398 -12510266 - MLT1A1 LTR MaLR -297 68 1 2315 91 0 24 chr1 269684748 269685046 -12508618 + AluY SINE Alu 1 291 -20 319 311 47 19 chr1 269685750 269685856 -12507808 - MIR3 SINE MIR 0 208 100 306 0 0 0 chr1 269686878 269686912 -12506752 + (CA)n Simple_repeat Simple_repeat 2 35 0 195 346 16 39 chr1 269687163 269687290 -12506374 + L2 LINE L2 1704 1827 -1487 442 306 67 34 chr1 269687448 269687716 -12505948 + L2 LINE L2 2223 2499 -815 1643 198 6 16 chr1 269688251 269688564 -12505100 + AluJo SINE Alu 1 310 -2 2063 141 0 3 chr1 269690094 269690374 -12503290 + AluSx SINE Alu 1 281 -31 381 22 0 0 chr1 269690374 269690420 -12503244 + (CA)n Simple_repeat Simple_repeat 1 46 0 2063 141 0 3 chr1 269690420 269690443 -12503221 + AluSx SINE Alu 281 303 -9 227 133 22 0 chr1 269690564 269690609 -12503055 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 1991 130 3 62 chr1 269691954 269692277 -12501387 - AluSx SINE Alu -8 304 1 180 0 0 0 chr1 269692279 269692299 -12501365 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 2171 135 0 22 chr1 269692299 269692617 -12501047 - AluSx SINE Alu 0 312 2 216 339 181 20 chr1 269692660 269692914 -12500750 - L2 LINE L2 -29 3243 2949 376 281 65 0 chr1 269693564 269693720 -12499944 - MIR SINE MIR -6 256 90 227 246 56 99 chr1 269694796 269694938 -12498726 + L3 LINE CR1 751 886 -691 2282 115 44 22 chr1 269695250 269695616 -12498048 + THE1C LTR MaLR 1 374 -1 760 321 145 38 chr1 269695997 269696499 -12497165 + L3 LINE CR1 1019 1574 -3 2420 73 3 0 chr1 269697149 269697435 -12496229 - AluSc SINE Alu -22 287 1 188 263 97 44 chr1 269698880 269698994 -12494670 - L2 LINE L2 -10 3262 3143 2340 107 10 0 chr1 269699110 269699419 -12494245 + AluSx SINE Alu 1 312 0 350 323 36 26 chr1 269699482 269699674 -12493990 + L1ME3A LINE L1 5400 5593 -528 244 272 72 32 chr1 269699669 269699794 -12493870 + L1P3 LINE L1 5625 5754 -418 * 241 294 44 7 chr1 269699821 269699957 -12493707 + L1ME3A LINE L1 5797 5937 -233 213 286 0 18 chr1 269699976 269700032 -12493632 + L2 LINE L2 3203 3257 -15 21 36 0 0 chr1 269700043 269700071 -12493593 + AT_rich Low_complexity Low_complexity 1 28 0 301 279 34 72 chr1 269700522 269700730 -12492934 - L1MC4a LINE L1 -398 7410 7211 * 316 277 101 0 chr1 269700697 269700816 -12492848 - L1MC4 LINE L1 -792 7250 7120 2386 92 0 0 chr1 269700957 269701251 -12492413 - AluSc SINE Alu -15 294 1 322 258 70 16 chr1 269701337 269701408 -12492256 - L1MA10 LINE L1 -32 6302 6232 5823 217 85 38 chr1 269701408 269701993 -12491671 - L1ME1 LINE L1 -101 6134 5578 1376 168 54 119 chr1 269701993 269702380 -12491284 + MLT1A1 LTR MaLR 4 365 0 5823 217 85 38 chr1 269702380 269702409 -12491255 - L1ME1 LINE L1 -657 5578 5552 2004 113 11 121 chr1 269702409 269702438 -12491226 + MER44D DNA MER2_type 1 32 -2459 1958 126 38 0 chr1 269702438 269702731 -12490933 - AluSp SINE Alu -8 305 2 2004 113 11 121 chr1 269702731 269703082 -12490582 + MER44D DNA MER2_type 32 609 0 5823 217 85 38 chr1 269703082 269704796 -12488868 - L1ME1 LINE L1 -683 5552 3689 2096 144 7 0 chr1 269704796 269705102 -12488562 + AluSx SINE Alu 1 308 -4 5823 217 85 38 chr1 269705102 269705176 -12488488 - L1ME1 LINE L1 -2546 3689 3620 1668 231 101 44 chr1 269705158 269705950 -12487714 - L1ME1 LINE L1 -4676 1720 884 * 570 234 35 7 chr1 269705943 269706084 -12487580 + L1MC5 LINE L1 6693 6837 -1124 * 350 279 91 43 chr1 269706254 269706462 -12487202 + L1MC5 LINE L1 7714 7931 -30 651 253 53 5 chr1 269706548 269706738 -12486926 - L1ME1 LINE L1 -5917 288 90 390 273 77 35 chr1 269707093 269707236 -12486428 - MIR SINE MIR -63 199 51 1463 184 77 4 chr1 269708143 269708415 -12485249 - AluJo SINE Alu -20 292 1 23 33 0 0 chr1 269708464 269708494 -12485170 + AT_rich Low_complexity Low_complexity 1 30 0 660 316 103 22 chr1 269708514 269709056 -12484608 - L1ME4a LINE L1 -45 6076 5491 2069 272 94 37 chr1 269709254 269710166 -12483498 + L2 LINE L2 18 981 -2333 1130 218 86 107 chr1 269710166 269710816 -12482848 + L2 LINE L2 2447 3088 -225 602 167 11 43 chr1 269710933 269711119 -12482545 + CT-rich Low_complexity Low_complexity 1 180 0 183 42 0 0 chr1 269711119 269711143 -12482521 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 239 247 27 14 chr1 269711143 269711207 -12482457 + CT-rich Low_complexity Low_complexity 2 69 -6 933 119 73 13 chr1 269711207 269711358 -12482306 - L1MC1 LINE L1 -6 6327 6168 507 254 65 49 chr1 269711374 269711559 -12482105 + L2 LINE L2 3125 3312 -1 451 233 75 11 chr1 269711564 269711768 -12481896 - L1ME4a LINE L1 -709 5447 5255 274 286 76 59 chr1 269711985 269712104 -12481560 - L2 LINE L2 0 3313 3193 775 274 50 22 chr1 269712214 269712531 -12481133 - L1ME3A LINE L1 -4 6166 5841 238 251 15 3 chr1 269712804 269712886 -12480778 - L1P1 LINE L1 -724 5431 5350 346 302 76 21 chr1 269713178 269713691 -12479973 - L1ME3A LINE L1 -1298 4848 4308 517 247 185 7 chr1 269713735 269713881 -12479783 + MIR SINE MIR 1 172 -90 435 297 196 20 chr1 269713926 269714371 -12479293 - L1ME3A LINE L1 -1922 4224 3702 321 197 0 0 chr1 269715859 269715930 -12477734 + (CA)n Simple_repeat Simple_repeat 2 72 0 352 295 160 13 chr1 269717915 269718071 -12475593 + MIR SINE MIR 20 198 -64 615 258 102 5 chr1 269718234 269718420 -12475244 + MIR SINE MIR 29 232 -30 219 302 42 31 chr1 269720737 269720833 -12472831 - MIR SINE MIR -70 192 96 367 308 157 5 chr1 269720873 269721058 -12472606 + MIR SINE MIR 44 256 -6 260 188 94 16 chr1 269722467 269722531 -12471133 - L2 LINE L2 0 3272 3204 1289 186 42 114 chr1 269722726 269723112 -12470552 - MLT1A1 LTR MaLR -5 360 3 2883 192 38 36 chr1 269723127 269723711 -12469953 - MER82 DNA MER2_type -67 586 2 371 285 77 8 chr1 269723728 269723858 -12469806 - L2 LINE L2 -623 2691 2553 505 276 96 25 chr1 269723931 269723991 -12469673 + L2 LINE L2 3098 3152 -161 198 0 0 0 chr1 269723991 269724013 -12469651 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 505 276 96 25 chr1 269724013 269724151 -12469513 + L2 LINE L2 3152 3310 -3 1989 164 23 48 chr1 269724452 269724848 -12468816 - MLT1B LTR MaLR -4 386 1 565 264 202 5 chr1 269726035 269726228 -12467436 + MIR SINE MIR 3 233 -29 225 236 0 0 chr1 269726294 269726400 -12467264 + GA-rich Low_complexity Low_complexity 1 106 0 3825 107 19 10 chr1 269726535 269727057 -12466607 - MER1A DNA MER1_type 0 527 1 2154 74 11 0 chr1 269727067 269727358 -12466306 - AluSc SINE Alu 0 304 11 2220 75 22 50 chr1 269727831 269728153 -12465511 + AluSq SINE Alu 1 313 0 754 68 0 75 chr1 269728169 269728607 -12465057 + (TGAG)n Simple_repeat Simple_repeat 1 405 0 266 242 141 8 chr1 269728791 269728919 -12464745 + L1ME4a LINE L1 5906 6050 -71 215 320 109 62 chr1 269729433 269729561 -12464103 + L2 LINE L2 3101 3234 -38 1513 229 122 59 chr1 269730987 269731651 -12462013 - MER50 LTR ERV1 -19 715 10 189 0 0 0 chr1 269733643 269733664 -12460000 + (GCATG)n Simple_repeat Simple_repeat 1 21 0 251 305 68 8 chr1 269733973 269734091 -12459573 - MER94 DNA DNA -8 126 2 373 294 44 22 chr1 269734146 269734282 -12459382 - MIR3 SINE MIR -65 143 5 2299 156 75 13 chr1 269736651 269737118 -12456546 - L1MA9 LINE L1 -35 6277 5782 6497 192 16 29 chr1 269737301 269737853 -12455811 - L1MA9 LINE L1 -533 5779 5222 426 102 0 0 chr1 269737853 269737912 -12455752 - MADE1 DNA Mariner -4 76 18 278 29 0 0 chr1 269737913 269737948 -12455716 - MADE1 DNA Mariner -30 50 16 6497 192 16 29 chr1 269737948 269739285 -12454379 - L1MA9 LINE L1 -1089 5223 3900 2032 133 0 29 chr1 269739375 269739690 -12453974 + AluSx SINE Alu 1 306 -6 457 294 81 64 chr1 269739956 269740698 -12452966 + L1MC/D LINE L1 4888 5645 -763 943 61 0 0 chr1 269740734 269740848 -12452816 + AluY SINE Alu 28 141 -170 245 180 0 20 chr1 269740861 269740911 -12452753 + MLT1E3 LTR MaLR 568 616 -8 223 28 56 0 chr1 269740948 269740984 -12452680 + (TG)n Simple_repeat Simple_repeat 2 39 0 2662 161 11 27 chr1 269740987 269741428 -12452236 + Tigger2a DNA MER2_type 1 434 0 240 35 0 0 chr1 269741443 269741472 -12452192 + (CA)n Simple_repeat Simple_repeat 2 30 0 3221 140 83 10 chr1 269741597 269742072 -12451592 + MLT2B3 LTR ERVL 1 518 -36 598 58 23 0 chr1 269742072 269742159 -12451505 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 3221 140 83 10 chr1 269742159 269742198 -12451466 + MLT2B3 LTR ERVL 518 553 -1 488 156 94 46 chr1 269742480 269742546 -12451118 + MIR SINE MIR 101 162 -100 1518 297 92 25 chr1 269742546 269743102 -12450562 - MLT1E LTR MaLR 0 593 1 488 156 94 46 chr1 269743102 269743175 -12450489 + MIR SINE MIR 162 249 -13 2173 118 0 0 chr1 269743232 269743519 -12450145 - AluSx SINE Alu -15 297 11 202 406 21 14 chr1 269743713 269743856 -12449808 - L2 LINE L2 -7 3265 3122 36 62 0 0 chr1 269743961 269744025 -12449639 + AT_rich Low_complexity Low_complexity 1 64 0 253 254 17 0 chr1 269744798 269744857 -12448807 - L2 LINE L2 0 3313 3254 942 243 62 30 chr1 269745378 269745707 -12447957 - MLT1I LTR MaLR 0 450 68 294 236 38 0 chr1 269746738 269746844 -12446820 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 2306 166 16 3 chr1 269747101 269747486 -12446178 + MLT1B LTR MaLR 1 390 0 1022 179 9 38 chr1 269747608 269747820 -12445844 + MIR SINE MIR 46 251 -11 5198 134 16 10 chr1 269748649 269749305 -12444359 - L1PA16 LINE L1 -20 6146 5482 2298 99 0 0 chr1 269749305 269749599 -12444065 - AluSg SINE Alu -16 294 1 5198 134 16 10 chr1 269749599 269749764 -12443900 - L1PA16 LINE L1 -684 5482 5320 428 75 15 0 chr1 269750474 269750512 -12443152 + (TC)n Simple_repeat Simple_repeat 1 42 -26 225 0 0 0 chr1 269750512 269750537 -12443127 + (TG)n Simple_repeat Simple_repeat 2 26 0 428 75 15 0 chr1 269750537 269750565 -12443099 + (TC)n Simple_repeat Simple_repeat 42 68 0 648 162 20 7 chr1 269750743 269750891 -12442773 + CT-rich Low_complexity Low_complexity 1 150 0 822 139 20 20 chr1 269750908 269751165 -12442499 + CT-rich Low_complexity Low_complexity 1 257 0 266 304 0 11 chr1 269751905 269751997 -12441667 - MIR SINE MIR -131 131 41 1228 276 34 41 chr1 269753337 269753397 -12440267 - L1ME4a LINE L1 -5 6116 6057 2294 108 0 3 chr1 269753397 269753704 -12439960 + AluSc SINE Alu 1 306 -3 1228 276 34 41 chr1 269753704 269754200 -12439464 - L1ME4a LINE L1 -64 6057 5564 1070 168 11 118 chr1 269754224 269754347 -12439317 - L1PA16 LINE L1 -16 6150 6072 2389 96 0 0 chr1 269754347 269754650 -12439014 + AluSx SINE Alu 1 303 -9 1070 168 11 118 chr1 269754650 269754806 -12438858 - L1PA16 LINE L1 -94 6072 5901 199 274 49 39 chr1 269755783 269755885 -12437779 - MIR3 SINE MIR 0 208 106 2279 115 0 0 chr1 269756504 269756799 -12436865 + AluSg SINE Alu 1 295 -15 2026 203 54 11 chr1 269757110 269757558 -12436106 - MLT1C LTR MaLR 0 467 1 1481 263 115 30 chr1 269758891 269758971 -12434693 - MLT1K LTR MaLR 0 588 516 1749 171 7 29 chr1 269758971 269759280 -12434384 + AluJo SINE Alu 1 302 -10 1481 263 115 30 chr1 269759280 269759739 -12433925 - MLT1K LTR MaLR -72 516 3 2299 113 0 0 chr1 269760137 269760439 -12433225 - AluY SINE Alu -9 302 1 339 232 87 0 chr1 269760736 269760805 -12432859 + Tigger2 DNA MER2_type 2643 2717 -1 488 251 153 33 chr1 269760883 269761158 -12432506 - L2 LINE L2 -19 3294 2987 336 355 17 12 chr1 269761192 269761364 -12432300 - L2 LINE L2 -471 2843 2671 615 261 70 94 chr1 269761386 269761758 -12431906 - MLT1J LTR MaLR -49 462 100 1045 256 77 68 chr1 269761774 269762216 -12431448 - MLT1J2 LTR MaLR -3 447 2 34 24 0 0 chr1 269762512 269762553 -12431111 + AT_rich Low_complexity Low_complexity 1 41 0 503 266 38 25 chr1 269763071 269763229 -12430435 + MIR SINE MIR 13 172 -90 303 354 46 21 chr1 269764163 269764400 -12429264 - L2 LINE L2 -942 2372 2130 21 36 0 0 chr1 269764403 269764431 -12429233 + AT_rich Low_complexity Low_complexity 1 28 0 330 76 0 139 chr1 269764613 269764628 -12429036 + ORSL DNA AcHobo 168 183 -92 1752 161 20 33 chr1 269764628 269764933 -12428731 - AluJb SINE Alu -11 301 1 330 76 0 139 chr1 269764933 269764996 -12428668 + ORSL DNA AcHobo 183 235 -40 2394 100 0 0 chr1 269765274 269765574 -12428090 + AluSg SINE Alu 5 304 -6 1023 154 0 12 chr1 269765579 269765741 -12427923 - FRAM SINE Alu -13 163 4 1965 162 0 7 chr1 269765975 269766284 -12427380 + AluJb SINE Alu 1 307 -5 254 196 0 0 chr1 269766451 269766497 -12427167 - L2 LINE L2 -6 3307 3262 211 320 96 16 chr1 269766629 269766754 -12426910 - L2 LINE L2 -1324 1990 1856 821 243 43 24 chr1 269766875 269767130 -12426534 - MIR SINE MIR -1 261 2 324 0 0 0 chr1 269767683 269767719 -12425945 + (TG)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chr1 269767732 269767758 -12425906 + (GA)n Simple_repeat Simple_repeat 1 26 0 2166 168 28 28 chr1 269768275 269768517 -12425147 - Tigger2a DNA MER2_type -2274 434 190 2199 95 41 0 chr1 269768517 269768811 -12424853 + AluSx SINE Alu 1 306 -6 2166 168 28 28 chr1 269768811 269769002 -12424662 - Tigger2a DNA MER2_type -2517 191 1 1242 115 5 53 chr1 269770425 269770634 -12423030 - AluJb SINE Alu -2 310 112 906 160 37 37 chr1 269770633 269770820 -12422844 - AluJo SINE Alu -125 187 1 * 189 0 0 0 chr1 269772843 269772864 -12420800 + (TG)n Simple_repeat Simple_repeat 2 22 0 260 256 73 0 chr1 269773658 269773740 -12419924 - L1MC4 LINE L1 -1339 6703 6616 256 175 0 50 chr1 269773741 269773821 -12419843 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 254 148 19 0 chr1 269774578 269774632 -12419032 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 2209 105 0 3 chr1 269775475 269775761 -12417903 + AluSx SINE Alu 1 285 -27 2449 84 0 0 chr1 269776447 269776743 -12416921 - AluSg SINE Alu -14 296 1 21 0 0 0 chr1 269778413 269778434 -12415230 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr1 269780641 269780672 -12412992 + GC_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr1 269781272 269781297 -12412367 + GC_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr1 269781813 269781845 -12411819 + GC_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 269790465 269790487 -12403177 + AT_rich Low_complexity Low_complexity 1 22 0 2432 95 0 0 chr1 269792175 269792480 -12401184 + AluSx SINE Alu 1 305 -7 216 0 0 0 chr1 269792480 269792504 -12401160 + (TA)n Simple_repeat Simple_repeat 2 25 0 673 162 120 0 chr1 269793472 269793589 -12400075 + FLAM_C SINE Alu 2 132 -11 237 245 0 0 chr1 269793706 269793755 -12399909 + (TTCA)n Simple_repeat Simple_repeat 2 50 0 191 358 0 0 chr1 269793770 269793837 -12399827 + MIR SINE MIR 15 81 -181 1542 228 105 128 chr1 269793857 269794962 -12398702 + L2 LINE L2 1998 3065 -248 1042 216 102 2 chr1 269794977 269795411 -12398253 - MLT1D LTR MaLR -2 503 1 2040 140 0 77 chr1 269795582 269795947 -12397717 + MER1B DNA MER1_type 1 337 0 2464 116 83 8 chr1 269795984 269796382 -12397282 + MSTA LTR MaLR 1 428 0 1432 220 7 17 chr1 269797004 269797300 -12396364 - AluJo SINE Alu -19 293 1 2194 88 39 0 chr1 269798593 269798878 -12394786 + AluSx SINE Alu 1 296 -16 247 309 0 0 chr1 269799074 269799142 -12394522 - MIR SINE MIR -105 103 36 2214 105 0 3 chr1 269802928 269803241 -12390423 - AluSx SINE Alu 0 312 1 841 223 56 88 chr1 269803265 269803606 -12390058 - L1ME2 LINE L1 -8 6156 5827 1216 136 25 30 chr1 269803712 269803947 -12389717 + AluSg/x SINE Alu 79 312 0 1850 202 14 8 chr1 269803950 269804317 -12389347 + LTR49 LTR ERV1 227 595 0 232 327 19 29 chr1 269804972 269805076 -12388588 + MIR SINE MIR 60 162 -100 216 67 0 0 chr1 269805340 269805370 -12388294 + (TG)n Simple_repeat Simple_repeat 1 30 0 675 273 118 30 chr1 269805550 269805692 -12387972 + MLT1J1 LTR MaLR 12 140 -306 2099 114 3 0 chr1 269805692 269805989 -12387675 + AluSq SINE Alu 1 298 -15 675 273 118 30 chr1 269805989 269806143 -12387521 + MLT1J1 LTR MaLR 140 334 -112 389 309 73 6 chr1 269806529 269806694 -12386970 + MER117 DNA MER1_type 4 179 -18 188 338 6 88 chr1 269806739 269806899 -12386765 - MER5A DNA MER1_type -26 163 17 303 266 0 0 chr1 269806977 269807056 -12386608 + MIR SINE MIR 135 213 -49 225 296 118 22 chr1 269808015 269808150 -12385514 - LTR67 LTR ERVL -391 166 19 440 322 75 11 chr1 269808557 269808731 -12384933 + MIR SINE MIR 35 219 -43 180 111 0 0 chr1 269809026 269809053 -12384611 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 802 200 6 18 chr1 269809126 269809291 -12384373 + AluJb SINE Alu 135 297 -15 208 318 50 60 chr1 269809493 269809694 -12383970 - MIR SINE MIR 0 262 64 205 311 29 29 chr1 269810659 269810762 -12382902 + L2 LINE L2 2951 3053 -219 186 43 0 0 chr1 269810773 269810796 -12382868 + (TC)n Simple_repeat Simple_repeat 2 24 0 198 200 0 0 chr1 269810927 269810962 -12382702 + L2 LINE L2 3271 3305 -8 394 287 75 78 chr1 269811132 269811609 -12382055 - LTR33 LTR ERVL -5 516 41 1260 190 81 4 chr1 269812029 269812287 -12381377 + AluJo SINE Alu 1 278 -34 286 250 40 0 chr1 269813464 269813564 -12380100 + L1ME4a LINE L1 6014 6117 -4 326 191 0 29 chr1 269813708 269813776 -12379888 + MIR SINE MIR 173 238 -24 201 204 45 0 chr1 269813743 269813787 -12379877 + L2 LINE L2 3210 3255 -17 * 1118 160 109 138 chr1 269814207 269814583 -12379081 - MLT1A1 LTR MaLR 0 365 1 614 265 38 11 chr1 269814614 269814799 -12378865 - MIR SINE MIR -36 226 37 754 181 0 43 chr1 269814971 269815109 -12378555 - FLAM_C SINE Alu -1 132 1 1584 168 6 44 chr1 269815111 269815427 -12378237 - AluJb SINE Alu -8 304 1 207 217 0 50 chr1 269815952 269816012 -12377652 - MIR SINE MIR -64 144 88 578 92 0 82 chr1 269818618 269818716 -12374948 + HY4 scRNA scRNA 1 90 -3 861 144 0 0 chr1 269818718 269818864 -12374800 + (GGAGAA)n Simple_repeat Simple_repeat 3 148 0 189 107 0 0 chr1 269818965 269818993 -12374671 + (GGGAA)n Simple_repeat Simple_repeat 4 31 0 239 273 0 0 chr1 269819457 269819523 -12374141 + L1P2 LINE L1 5763 5828 -326 377 299 45 38 chr1 269820135 269820292 -12373372 - MIR SINE MIR 0 262 105 3406 119 42 27 chr1 269820391 269820910 -12372754 + MER1A DNA MER1_type 1 527 0 606 224 173 22 chr1 269821003 269821182 -12372482 + MLT1J2 LTR MaLR 245 450 0 362 288 8 76 chr1 269822041 269822173 -12371491 + L2 LINE L2 3139 3261 -11 22 0 0 0 chr1 269823004 269823026 -12370638 + AT_rich Low_complexity Low_complexity 1 22 0 261 265 128 39 chr1 269823190 269823292 -12370372 - L2 LINE L2 -20 3293 3183 1641 112 30 54 chr1 269824086 269824332 -12369332 + L1MB3 LINE L1 5893 6132 -51 2091 108 7 3 chr1 269824332 269824629 -12369035 + AluSp SINE Alu 1 298 -15 1641 112 30 54 chr1 269824629 269824677 -12368987 + L1MB3 LINE L1 6132 6180 -3 187 329 46 72 chr1 269824750 269824902 -12368762 + L2 LINE L2 3125 3272 0 340 278 131 5 chr1 269825910 269826101 -12367563 + L1MEd LINE L1 2 216 -5903 1474 272 72 53 chr1 269826115 269826919 -12366745 + L1MEd LINE L1 439 1257 -4862 6460 92 41 0 chr1 269827038 269828007 -12365657 - L1PA14 LINE L1 -9 6152 5174 682 238 106 0 chr1 269828180 269828340 -12365324 + MER45A DNA AcHobo 2 178 0 233 194 194 0 chr1 269829547 269829609 -12364055 + L3b LINE CR1 1403 1476 -107 1632 120 21 0 chr1 269830880 269831122 -12362542 - AluSx SINE Alu -21 291 45 801 156 16 0 chr1 269831436 269831564 -12362100 + AluJo SINE Alu 3 132 -180 30 0 0 0 chr1 269831564 269831594 -12362070 + AT_rich Low_complexity Low_complexity 1 30 0 1790 151 0 3 chr1 269831604 269831889 -12361775 + AluSx SINE Alu 11 294 -18 34 0 0 0 chr1 269831893 269831927 -12361737 + AT_rich Low_complexity Low_complexity 1 34 0 869 188 6 0 chr1 269831927 269832092 -12361572 + AluJo SINE Alu 136 301 -11 489 260 124 63 chr1 269832525 269832756 -12360908 + LTR16C LTR ERVL 72 338 -153 832 178 40 17 chr1 269832756 269832930 -12360734 - MER45A DNA AcHobo 0 178 1 489 260 124 63 chr1 269832930 269833094 -12360570 + LTR16C LTR ERVL 338 491 0 779 123 190 37 chr1 269833140 269833303 -12360361 - MER4C LTR ERV1 0 465 278 2453 104 34 70 chr1 269833317 269833758 -12359906 - MER4A LTR ERV1 -239 425 1 414 321 0 22 chr1 269833759 269833893 -12359771 + MIR SINE MIR 127 257 -5 1673 110 57 15 chr1 269834039 269834303 -12359361 - AluSg SINE Alu -24 286 12 1902 98 6 92 chr1 269834450 269834785 -12358879 - AluSq SINE Alu -2 311 6 278 231 94 51 chr1 269835330 269835447 -12358217 - L2 LINE L2 -1 3271 3150 2253 175 5 24 chr1 269836516 269836938 -12356726 - MLT2D LTR ERVL 0 414 1 697 260 61 25 chr1 269837164 269837360 -12356304 + MIR SINE MIR 19 221 -41 1425 201 35 3 chr1 269837975 269838264 -12355400 + AluJo SINE Alu 1 298 -14 202 271 0 0 chr1 269838733 269838781 -12354883 + G-rich Low_complexity Low_complexity 6 53 0 245 318 12 12 chr1 269838994 269839079 -12354585 + MIR SINE MIR 69 153 -109 2132 103 0 0 chr1 269839954 269840245 -12353419 + AluSx SINE Alu 6 296 -16 470 319 97 29 chr1 269840359 269840638 -12353026 + L1MC4a LINE L1 4384 4681 -1465 2357 142 11 13 chr1 269840640 269841013 -12352651 + MER72 LTR ERV1 325 696 -26 366 304 128 25 chr1 269841049 269841368 -12352296 + L1MC4a LINE L1 4655 5006 -1140 2169 112 3 0 chr1 269841377 269841673 -12351991 - AluSp SINE Alu -16 297 1 1205 177 41 5 chr1 269841710 269841930 -12351734 + AluJb SINE Alu 85 312 0 1322 252 144 31 chr1 269842218 269842761 -12350903 + L1MC4a LINE L1 5319 5922 -1886 317 276 10 10 chr1 269842776 269842874 -12350790 - L1MC/D LINE L1 -2365 5443 5346 1421 196 32 0 chr1 269845087 269845372 -12348292 + AluJo SINE Alu 1 294 -18 2182 100 7 0 chr1 269845374 269845683 -12347981 + AluSq SINE Alu 1 311 -2 252 77 0 0 chr1 269845683 269845722 -12347942 + (CA)n Simple_repeat Simple_repeat 2 40 0 1937 223 45 63 chr1 269846311 269846693 -12346971 - MLT1F LTR MaLR 0 542 172 1906 136 10 0 chr1 269846693 269846988 -12346676 - AluSq SINE Alu -15 298 1 1937 223 45 63 chr1 269846988 269847157 -12346507 - MLT1F LTR MaLR -370 172 1 2306 89 0 0 chr1 269847611 269847915 -12345749 + AluSx SINE Alu 1 304 -8 1150 62 0 0 chr1 269848644 269848789 -12344875 + AluY SINE Alu 155 299 -12 217 338 183 7 chr1 269848817 269848959 -12344705 + MIR SINE MIR 1 167 -95 1623 121 0 0 chr1 269849374 269849598 -12344066 + AluSq SINE Alu 1 224 -89 297 75 0 0 chr1 269849599 269849639 -12344025 + (GAA)n Simple_repeat Simple_repeat 2 41 0 448 138 59 33 chr1 269849664 269849816 -12343848 + GA-rich Low_complexity Low_complexity 5 160 0 783 264 29 0 chr1 269850863 269851037 -12342627 - MIR SINE MIR -54 208 30 242 301 78 29 chr1 269851799 269851902 -12341762 - MIR SINE MIR -55 207 100 383 264 47 18 chr1 269852031 269852172 -12341492 - MIR SINE MIR -65 143 11 595 328 32 28 chr1 269852441 269852599 -12341065 - MIR SINE MIR 0 262 101 1823 162 6 0 chr1 269852599 269852913 -12340751 + L1MA5A LINE L1 5982 6297 0 595 328 32 28 chr1 269852913 269853004 -12340660 - MIR SINE MIR -161 101 12 352 312 126 28 chr1 269853017 269853232 -12340432 + MIR SINE MIR 6 241 -21 2133 108 0 21 chr1 269853338 269853652 -12340012 - AluSx SINE Alu 0 308 1 22 103 0 0 chr1 269853783 269853861 -12339803 + AT_rich Low_complexity Low_complexity 1 78 0 181 255 106 0 chr1 269854276 269854323 -12339341 + MIR SINE MIR 89 140 -122 551 301 97 102 chr1 269854386 269854646 -12339018 + L2 LINE L2 2933 3192 -80 2295 103 0 10 chr1 269854646 269854956 -12338708 - AluSg SINE Alu -1 309 3 551 301 97 102 chr1 269854956 269855037 -12338627 + L2 LINE L2 3192 3272 0 214 272 123 70 chr1 269855423 269855537 -12338127 - L3 LINE CR1 -12 1565 1446 317 330 55 29 chr1 269855899 269856208 -12337456 + L1MC5 LINE L1 7609 7925 -36 217 329 40 0 chr1 269857426 269857502 -12336162 + MIR SINE MIR 20 98 -164 2127 94 3 88 chr1 269857635 269857963 -12335701 - AluSx SINE Alu -12 300 1 219 295 0 0 chr1 269857963 269858024 -12335640 + MIR3 SINE MIR 128 188 -20 251 226 0 32 chr1 269858806 269858868 -12334796 - MER94 DNA DNA -70 64 5 2378 94 0 0 chr1 269859608 269859905 -12333759 + AluSx SINE Alu 1 297 -15 1047 215 56 0 chr1 269859980 269860231 -12333433 + L1PB4 LINE L1 5886 6150 -6 2131 128 0 10 chr1 269860632 269860938 -12332726 + AluSx SINE Alu 1 303 -9 700 239 19 56 chr1 269861218 269861434 -12332230 - MIR SINE MIR -21 241 36 1990 226 65 12 chr1 269861563 269861625 -12332039 - Charlie1b DNA MER1_type -2238 523 466 2019 163 0 3 chr1 269861625 269861925 -12331739 + AluJo SINE Alu 1 299 -13 1990 226 65 12 chr1 269861925 269862357 -12331307 - Charlie1b DNA MER1_type -2295 466 3 1647 81 0 0 chr1 269862371 269862569 -12331095 - AluSg/x SINE Alu -7 305 108 248 315 54 0 chr1 269862581 269862692 -12330972 - MER103 DNA DNA -48 118 2 302 251 93 53 chr1 269862890 269863030 -12330634 + MIR SINE MIR 4 156 -61 405 298 76 60 chr1 269863134 269863503 -12330161 + L2 LINE L2 2882 3256 -16 503 292 111 70 chr1 269864509 269865253 -12328411 - L2 LINE L2 0 3313 2533 311 350 14 0 chr1 269865813 269865956 -12327708 + MLT1H LTR MaLR 107 251 -298 187 367 153 0 chr1 269866143 269866241 -12327423 + L2 LINE L2 3153 3265 -7 1697 190 11 0 chr1 269868555 269868839 -12324825 + AluJo SINE Alu 5 291 -21 2692 76 31 6 chr1 269869070 269869425 -12324239 + THE1B LTR MaLR 1 364 0 186 229 57 71 chr1 269869678 269869748 -12323916 - MIR SINE MIR -66 196 128 419 290 74 40 chr1 269870268 269870444 -12323220 - MIR3 SINE MIR -7 201 20 311 260 24 49 chr1 269870800 269870923 -12322741 + L1ME3 LINE L1 5905 6024 -138 2075 102 4 0 chr1 269870923 269871189 -12322475 - AluSg SINE Alu -7 303 37 579 107 60 0 chr1 269871197 269871281 -12322383 - AluSg SINE Alu -220 90 2 684 214 28 0 chr1 269871283 269871428 -12322236 + L1ME3 LINE L1 6013 6161 -1 254 304 0 51 chr1 269871445 269871524 -12322140 + L3 LINE CR1 1401 1475 -102 410 265 20 107 chr1 269872759 269872955 -12320709 - MIR SINE MIR -10 252 74 415 223 200 31 chr1 269872976 269873106 -12320558 + L2 LINE L2 3159 3310 -3 202 254 55 0 chr1 269873108 269873163 -12320501 - MIR SINE MIR -190 72 15 258 248 165 9 chr1 269873226 269873335 -12320329 + L3b LINE CR1 1340 1465 -118 433 255 9 19 chr1 269873813 269873919 -12319745 - MER5A DNA MER1_type -83 106 2 378 228 280 13 chr1 269874038 269874238 -12319426 - L2 LINE L2 -18 3254 3004 188 381 103 7 chr1 269874531 269874686 -12318978 - MIR SINE MIR -33 229 60 230 0 33 0 chr1 269874800 269874830 -12318834 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 936 211 14 14 chr1 269875592 269875764 -12317900 + L1MB3 LINE L1 5968 6139 -44 2316 70 0 7 chr1 269875764 269876048 -12317616 + AluY SINE Alu 1 282 -29 321 47 0 0 chr1 269876048 269876091 -12317573 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 936 211 14 14 chr1 269876091 269876130 -12317534 + L1MB3 LINE L1 6137 6180 -3 1664 172 65 17 chr1 269876249 269876539 -12317125 + AluJo SINE Alu 1 304 -8 500 266 79 1 chr1 269877287 269877454 -12316210 - MIR SINE MIR -63 145 18 1021 147 57 0 chr1 269878342 269878519 -12315145 - MER5A DNA MER1_type 0 189 3 460 287 129 25 chr1 269878570 269878772 -12314892 - MIR SINE MIR -3 259 37 439 258 24 51 chr1 269879207 269879388 -12314276 - MIR SINE MIR -55 153 19 1298 112 0 0 chr1 269881866 269882045 -12311619 - AluY SINE Alu 0 311 133 2466 231 67 41 chr1 269882058 269882937 -12310727 + Zaphod DNA AcHobo 92 993 -3038 1228 246 82 2 chr1 269882932 269883335 -12310329 + Zaphod DNA AcHobo 3595 4029 -2 * 239 267 22 56 chr1 269883464 269883554 -12310110 + L2 LINE L2 3217 3303 -10 1959 157 3 16 chr1 269884873 269885191 -12308473 + 7SLRNA srpRNA srpRNA 2 315 -5 1489 216 38 18 chr1 269885436 269885835 -12307829 - MER97a DNA MER1_type? -2 892 486 360 245 0 147 chr1 269885949 269886092 -12307572 - L1MC4a LINE L1 -1911 5897 5776 1101 285 45 36 chr1 269886099 269886569 -12307095 - MER97a DNA MER1_type? -420 474 1 2164 99 7 14 chr1 269886769 269887062 -12306602 - AluY SINE Alu -20 291 1 533 298 22 33 chr1 269887131 269887312 -12306352 - MIR SINE MIR -48 214 36 212 365 0 0 chr1 269888258 269888321 -12305343 - MIR SINE MIR -180 82 20 292 329 0 0 chr1 269888498 269888583 -12305081 - MIR SINE MIR -30 232 148 225 0 0 0 chr1 269888847 269888872 -12304792 + (A)n Simple_repeat Simple_repeat 1 25 0 251 321 206 17 chr1 269889957 269890312 -12303352 + L2 LINE L2 2337 2758 -556 613 241 81 34 chr1 269890609 269890663 -12303001 + MER112 DNA MER1_type 1 51 -209 2046 164 0 0 chr1 269890663 269890967 -12302697 - AluJo SINE Alu -6 306 3 613 241 81 34 chr1 269890967 269891148 -12302516 + MER112 DNA MER1_type 51 247 -13 210 268 0 36 chr1 269891240 269891296 -12302368 + L2 LINE L2 3149 3202 -70 4097 109 2 5 chr1 269891687 269892264 -12301400 + L1PA10 LINE L1 5594 6168 0 303 273 133 16 chr1 269892933 269893061 -12300603 + MIR SINE MIR 118 260 -2 22 0 0 0 chr1 269893166 269893188 -12300476 + AT_rich Low_complexity Low_complexity 1 22 0 2814 111 19 32 chr1 269893194 269893626 -12300038 + MSTC LTR MaLR 3 428 0 713 228 187 56 chr1 269894607 269895002 -12298662 + MLT1J LTR MaLR 11 457 -54 449 329 82 31 chr1 269895328 269895583 -12298081 - L2 LINE L2 0 3272 3005 244 293 24 16 chr1 269896096 269896219 -12297445 + MLT2E LTR ERVL 505 628 0 549 257 175 16 chr1 269896283 269896586 -12297078 + L1MC4 LINE L1 7691 8041 -1 2123 123 3 10 chr1 269897162 269897462 -12296202 + AluSx SINE Alu 1 298 -14 324 120 0 0 chr1 269897517 269897567 -12296097 + (A)n Simple_repeat Simple_repeat 1 50 0 1116 229 41 41 chr1 269897759 269897780 -12295884 - MLT1A2 LTR MaLR 0 467 447 2507 144 62 0 chr1 269897780 269898183 -12295481 + MSTC LTR MaLR 1 428 0 1116 229 41 41 chr1 269898183 269898529 -12295135 - MLT1A2 LTR MaLR -20 447 4 1442 71 0 0 chr1 269900491 269900660 -12293004 - AluSq SINE Alu -15 298 130 2236 74 3 11 chr1 269900899 269901209 -12292455 + AluY SINE Alu 1 308 0 213 337 36 12 chr1 269902921 269903004 -12290660 + L2 LINE L2 3208 3292 -21 4540 200 37 45 chr1 269903073 269905124 -12288540 + L1MD1 LINE L1 3920 5976 -266 1259 195 30 30 chr1 269905143 269905440 -12288224 + L1MD1 LINE L1 5946 6242 0 214 384 88 32 chr1 269906822 269906947 -12286717 - L2 LINE L2 -4 3268 3137 729 264 169 34 chr1 269906960 269907404 -12286260 - MLT1J LTR MaLR -1 510 7 247 242 0 22 chr1 269908514 269908605 -12285059 + C-rich Low_complexity Low_complexity 5 93 0 216 304 0 0 chr1 269908707 269908763 -12284901 + C-rich Low_complexity Low_complexity 2 57 0 1719 267 138 42 chr1 269908763 269909169 -12284495 + L2 LINE L2 1985 2351 -962 3058 103 7 2 chr1 269909169 269909595 -12284069 + MSTA LTR MaLR 1 428 0 1719 267 138 42 chr1 269909595 269910400 -12283264 + L2 LINE L2 2351 3313 0 348 349 94 0 chr1 269910409 269910558 -12283106 + MIR SINE MIR 63 225 -37 253 319 176 5 chr1 269912280 269912496 -12281168 + MIR SINE MIR 2 254 -8 241 307 178 40 chr1 269913335 269913560 -12280104 + L2 LINE L2 3033 3288 -25 200 333 17 0 chr1 269913564 269913624 -12280040 - L2 LINE L2 -4 3309 3249 2052 187 73 9 chr1 269913707 269914172 -12279492 - MLT1D LTR MaLR -7 498 4 1510 224 110 21 chr1 269914397 269914589 -12279075 + MLT1C LTR MaLR 1 175 -292 195 42 0 0 chr1 269914589 269914613 -12279051 + (CAGAGA)n Simple_repeat Simple_repeat 6 29 0 1510 224 110 21 chr1 269914613 269914849 -12278815 + MLT1C LTR MaLR 175 467 0 2390 88 0 3 chr1 269915681 269915978 -12277686 - AluSx SINE Alu -16 296 1 769 293 105 47 chr1 269915978 269916511 -12277153 - L2 LINE L2 -7 3306 2736 480 48 0 0 chr1 269916515 269916578 -12277086 + (TG)n Simple_repeat Simple_repeat 1 63 0 396 243 0 0 chr1 269916612 269916723 -12276941 + CT-rich Low_complexity Low_complexity 3 113 0 198 319 162 29 chr1 269916731 269916941 -12276723 - L2 LINE L2 -621 2693 2456 449 281 88 26 chr1 269917240 269917432 -12276232 + MER63A DNA MER1_type 1 204 -6 486 326 52 0 chr1 269917713 269917848 -12275816 + MIR3 SINE MIR 28 169 -39 1158 184 128 3 chr1 269920324 269920612 -12273052 - MER33 DNA MER1_type 0 324 1 431 265 176 10 chr1 269921306 269921510 -12272154 - Charlie5 DNA MER1_type -27 2585 2348 195 129 0 0 chr1 269922384 269922415 -12271249 + (TCC)n Simple_repeat Simple_repeat 3 33 0 613 255 148 5 chr1 269925000 269925196 -12268468 + MIR SINE MIR 36 259 -3 677 296 109 42 chr1 269925219 269926040 -12267624 - L2 LINE L2 -163 3109 2216 443 294 70 35 chr1 269928121 269928322 -12265342 + L3 LINE CR1 1369 1576 -1 2164 106 55 0 chr1 269928330 269928622 -12265042 + AluSg SINE Alu 1 308 -2 270 228 269 48 chr1 269929408 269929553 -12264111 - MIR SINE MIR -3 259 83 2459 75 0 3 chr1 269929942 269930247 -12263417 - AluY SINE Alu -7 304 1 192 367 83 9 chr1 269930330 269930439 -12263225 + L2 LINE L2 3114 3230 -42 426 165 80 170 chr1 269930507 269930695 -12262969 - MER91A DNA MER1_type -25 171 1 364 309 32 24 chr1 269931556 269931679 -12261985 - L2 LINE L2 0 3272 3149 670 227 130 0 chr1 269932800 269932954 -12260710 + FAM SINE Alu 2 175 0 1625 172 70 36 chr1 269933006 269933166 -12260498 - AluJb SINE Alu 0 312 159 2490 84 0 0 chr1 269933166 269933475 -12260189 - AluY SINE Alu -2 309 1 1625 172 70 36 chr1 269933475 269933616 -12260048 - AluJb SINE Alu -153 159 1 827 184 0 27 chr1 269933910 269934057 -12259607 + AluJo SINE Alu 1 143 -169 182 33 67 0 chr1 269934083 269934113 -12259551 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1777 101 72 43 chr1 269934338 269934616 -12259048 + AluSg SINE Alu 11 296 -14 2010 161 0 3 chr1 269934972 269935263 -12258401 + AluJo SINE Alu 1 290 -22 280 82 16 82 chr1 269935265 269935326 -12258338 - FLAM_A SINE Alu 0 133 77 5866 183 57 59 chr1 269935465 269936410 -12257254 + Looper DNA T2_type 12 953 -605 1672 160 0 67 chr1 269936410 269936723 -12256941 - AluJo SINE Alu -20 292 1 5866 183 57 59 chr1 269936723 269937328 -12256336 + Looper DNA T2_type 953 1558 0 317 215 32 21 chr1 269937372 269937465 -12256199 + MER103 DNA DNA 8 101 -65 2025 147 13 3 chr1 269937808 269938108 -12255556 - AluSg SINE Alu -6 304 2 1644 171 3 14 chr1 269938212 269938498 -12255166 + AluJb SINE Alu 16 298 -14 21 0 0 0 chr1 269938615 269938636 -12255028 + AT_rich Low_complexity Low_complexity 1 21 0 1461 128 0 25 chr1 269938636 269938879 -12254785 - L1MA5A LINE L1 -3 6294 6058 197 268 49 55 chr1 269938997 269939161 -12254503 + L2 LINE L2 1441 1603 -1711 1877 280 101 29 chr1 269939166 269940115 -12253549 + L2 LINE L2 1710 2727 -587 882 214 17 0 chr1 269940116 269940294 -12253370 - MLT1C LTR MaLR 0 467 287 1237 92 7 0 chr1 269940394 269940546 -12253118 - AluSq SINE Alu -160 153 1 709 177 16 8 chr1 269940920 269941044 -12252620 + FLAM_C SINE Alu 3 127 -16 396 210 0 70 chr1 269941623 269941723 -12251941 + MIR SINE MIR 148 240 -22 281 318 151 27 chr1 269943743 269944228 -12249436 + L2 LINE L2 2212 2756 -558 417 352 40 11 chr1 269944437 269944613 -12249051 + L2 LINE L2 3086 3266 -6 199 155 0 52 chr1 269944616 269944674 -12248990 + GA-rich Low_complexity Low_complexity 4 58 0 217 380 33 0 chr1 269944896 269944988 -12248676 - L2 LINE L2 -23 3249 3155 431 82 16 0 chr1 269945012 269945073 -12248591 + MER58A DNA MER1_type 26 87 -20 1520 109 17 1 chr1 269945763 269945792 -12247872 + L1PA16 LINE L1 5678 5705 -460 1247 114 40 5 chr1 269945792 269945993 -12247671 - L1PA16 LINE L1 -2 6164 5957 1520 109 17 1 chr1 269945993 269946217 -12247447 + L1PA16 LINE L1 5705 5940 -225 231 248 56 112 chr1 269948475 269948600 -12245064 - MER91B DNA MER1_type -33 157 40 197 292 0 0 chr1 269949494 269949559 -12244105 - L2 LINE L2 -211 3061 2997 279 390 28 0 chr1 269949679 269949820 -12243844 + MIR SINE MIR 47 191 -71 1575 194 24 56 chr1 269949860 269950236 -12243428 + MLT1A1 LTR MaLR 2 365 0 2535 66 0 3 chr1 269950290 269950592 -12243072 + AluY SINE Alu 1 301 -10 2016 118 18 92 chr1 269954530 269954606 -12239058 + MLT1B LTR MaLR 38 118 -272 1826 124 17 31 chr1 269954606 269954897 -12238767 - AluSx SINE Alu -25 287 1 2016 118 18 92 chr1 269954897 269955201 -12238463 + MLT1B LTR MaLR 118 390 0 315 0 0 0 chr1 269958047 269958082 -12235582 + (CA)n Simple_repeat Simple_repeat 1 35 0 531 228 171 0 chr1 269958223 269958381 -12235283 + MIR SINE MIR 65 249 -13 490 139 13 0 chr1 269960202 269960281 -12233383 + MADE1 DNA Mariner 1 80 0 288 0 0 0 chr1 269960351 269960383 -12233281 + (CA)n Simple_repeat Simple_repeat 2 33 0 512 110 14 0 chr1 269960709 269960782 -12232882 + MADE1 DNA Mariner 7 80 0 192 97 0 0 chr1 269960855 269960886 -12232778 + (CA)n Simple_repeat Simple_repeat 2 32 0 226 272 0 25 chr1 269961953 269962023 -12231641 + GA-rich Low_complexity Low_complexity 4 115 0 183 347 63 11 chr1 269963075 269963170 -12230494 - MIR3 SINE MIR -54 154 55 276 373 67 16 chr1 269963707 269963900 -12229764 + MIR SINE MIR 54 256 -6 1905 110 3 17 chr1 269964056 269964210 -12229454 - AluSx SINE Alu -15 297 147 2320 64 0 3 chr1 269964210 269964505 -12229159 - AluY SINE Alu -17 294 1 1905 110 3 17 chr1 269964505 269964651 -12229013 - AluSx SINE Alu -165 147 1 2166 106 3 0 chr1 269964654 269964947 -12228717 - AluSg SINE Alu -14 296 3 1910 143 13 0 chr1 269965027 269965335 -12228329 - AluSx SINE Alu 0 312 1 2046 122 0 3 chr1 269965448 269965742 -12227922 - AluSx SINE Alu -19 293 1 303 301 52 24 chr1 269965969 269966182 -12227482 + L1MC5 LINE L1 7711 7929 -32 1927 139 0 10 chr1 269966208 269966509 -12227155 + AluSx SINE Alu 1 298 -14 915 150 0 0 chr1 269966541 269966674 -12226990 + FLAM_C SINE Alu 1 133 0 201 74 0 0 chr1 269967882 269967909 -12225755 + (TG)n Simple_repeat Simple_repeat 2 28 0 26 0 0 0 chr1 269969531 269969557 -12224107 + AT_rich Low_complexity Low_complexity 1 26 0 205 226 19 0 chr1 269970018 269970071 -12223593 + (TATG)n Simple_repeat Simple_repeat 4 57 0 202 237 0 53 chr1 269970460 269970536 -12223128 + (TG)n Simple_repeat Simple_repeat 1 72 0 2315 89 0 3 chr1 269971973 269972277 -12221387 - AluSx SINE Alu -9 303 1 392 297 113 5 chr1 269972388 269972573 -12221091 + MIR SINE MIR 37 241 -21 492 274 23 40 chr1 269973172 269973347 -12220317 + MER97b DNA MER1_type? 8 179 -874 359 276 114 8 chr1 269973867 269973990 -12219674 - MIR SINE MIR -72 190 55 355 279 300 11 chr1 269975589 269975779 -12217885 + MIR SINE MIR 17 261 -1 287 301 24 24 chr1 269975827 269975910 -12217754 - L2 LINE L2 -4 3309 3227 2054 120 3 0 chr1 269976008 269976307 -12217357 - AluSx SINE Alu -12 300 1 249 371 119 28 chr1 269976633 269976776 -12216888 - L3 LINE CR1 -37 1540 1385 445 285 90 51 chr1 269977874 269978130 -12215534 + Charlie8 DNA MER1_type 1 266 -2151 843 99 7 35 chr1 269978593 269978734 -12214930 + AluSp/q SINE Alu 177 313 0 329 242 12 68 chr1 269978751 269978912 -12214752 - L1ME2 LINE L1 -52 6112 5961 3929 130 12 20 chr1 269978956 269979241 -12214423 + L1MC1 LINE L1 5691 5977 -356 2064 114 0 0 chr1 269979241 269979540 -12214124 + AluY SINE Alu 1 299 -12 3929 130 12 20 chr1 269979540 269979902 -12213762 + L1MC1 LINE L1 5977 6333 0 1000 249 28 10 chr1 269979979 269980268 -12213396 - L1ME2 LINE L1 -222 5948 5655 512 274 24 34 chr1 269980279 269980575 -12213089 - L1ME2 LINE L1 -2616 3530 3238 842 142 0 0 chr1 269980575 269980709 -12212955 - FLAM_C SINE Alu -4 139 6 274 141 0 47 chr1 269980710 269980774 -12212890 - L1ME2 LINE L1 -2900 3246 3186 439 171 0 12 chr1 269980814 269980896 -12212768 + Tigger5 DNA MER2_type 2240 2320 -3 383 237 26 0 chr1 269980896 269980971 -12212693 - Tigger5 DNA MER2_type -2245 78 2 552 249 61 11 chr1 269981009 269981270 -12212394 - L1ME2 LINE L1 -3025 3121 2848 2238 94 0 3 chr1 269981270 269981568 -12212096 + AluSx SINE Alu 1 297 -15 817 219 132 35 chr1 269981670 269981957 -12211707 - MLT1C LTR MaLR -147 320 6 770 292 57 39 chr1 269981962 269982461 -12211203 + L2 LINE L2 2724 3223 -90 389 161 74 25 chr1 269982868 269982949 -12210715 - MLT1D LTR MaLR -335 170 86 1704 180 0 13 chr1 269982949 269983254 -12210410 - AluSx SINE Alu -11 301 1 795 190 0 7 chr1 269983286 269983423 -12210241 - MLT1A1 LTR MaLR 0 365 230 845 191 26 151 chr1 269983575 269983926 -12209738 + MER51C LTR ERV1 334 640 0 536 175 51 33 chr1 269983926 269984113 -12209551 - MLT1A2 LTR MaLR -127 247 10 313 200 15 15 chr1 269984118 269984183 -12209481 - MLT1D LTR MaLR -440 65 1 290 341 45 11 chr1 269985134 269985222 -12208442 - L2 LINE L2 -61 3211 3121 * 482 285 85 18 chr1 269985218 269985383 -12208281 - MIR SINE MIR -67 195 20 403 375 94 20 chr1 269985491 269986035 -12207629 - L2 LINE L2 -875 2439 1856 1969 129 0 19 chr1 269986160 269986471 -12207193 + AluSc SINE Alu 1 305 -4 369 0 0 0 chr1 269986471 269986512 -12207152 + (TA)n Simple_repeat Simple_repeat 2 42 0 1812 145 7 3 chr1 269986512 269986809 -12206855 + AluSx SINE Alu 2 299 -13 1965 271 73 69 chr1 269987702 269988855 -12204809 + L1ME3A LINE L1 543 1690 -4439 2233 97 10 0 chr1 269988855 269989165 -12204499 + AluSp SINE Alu 1 313 0 2211 77 0 10 chr1 269989169 269989467 -12204197 + AluY SINE Alu 1 295 -16 1965 271 73 69 chr1 269989467 269989829 -12203835 + L1ME3A LINE L1 1692 2051 -4078 1579 186 7 0 chr1 269989829 269990109 -12203555 + AluJb SINE Alu 1 282 -30 1965 271 73 69 chr1 269990109 269990246 -12203418 + L1ME3A LINE L1 2051 2186 -3943 1794 105 0 0 chr1 269990246 269990484 -12203180 + AluSq SINE Alu 1 238 -75 1965 271 73 69 chr1 269990484 269990700 -12202964 + L1ME3A LINE L1 2186 2400 -3729 1867 120 33 0 chr1 269990700 269991019 -12202645 - AluSx SINE Alu 0 328 1 1965 271 73 69 chr1 269991019 269991418 -12202246 + L1ME3A LINE L1 2400 2849 -3280 2333 92 0 0 chr1 269991418 269991722 -12201942 - AluSx SINE Alu -8 304 1 1965 271 73 69 chr1 269991722 269992025 -12201639 + L1ME3A LINE L1 2849 3149 -2980 383 237 26 0 chr1 269992026 269992101 -12201563 + Tigger5 DNA MER2_type 2 78 -2245 439 171 0 12 chr1 269992101 269992183 -12201481 - Tigger5 DNA MER2_type -3 2320 2240 274 141 0 47 chr1 269992223 269992287 -12201377 + L1ME3A LINE L1 3169 3229 -2900 842 142 0 0 chr1 269992288 269992422 -12201242 + FLAM_C SINE Alu 6 139 -4 512 274 24 34 chr1 269992422 269992718 -12200946 + L1ME3A LINE L1 3221 3513 -2616 1000 249 28 10 chr1 269992729 269993018 -12200646 + L1ME3A LINE L1 5638 5931 -222 2216 130 19 8 chr1 269993095 269993457 -12200207 - L1MC1 LINE L1 0 6333 5968 2040 114 0 0 chr1 269993457 269993756 -12199908 - AluY SINE Alu -12 299 1 352 273 71 18 chr1 269993867 269994025 -12199639 - MIR SINE MIR -47 215 45 256 216 0 0 chr1 269994633 269994684 -12198980 + LTR67 LTR ERVL 507 557 0 244 288 113 12 chr1 269994741 269994821 -12198843 + L2 LINE L2 3212 3299 -14 225 65 0 0 chr1 269995366 269995397 -12198267 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 485 303 13 20 chr1 269996155 269996320 -12197344 - MER5A DNA MER1_type -3 186 12 324 175 32 16 chr1 269996697 269996760 -12196904 + MLT1C LTR MaLR 402 465 -2 288 279 19 0 chr1 269996809 269996913 -12196751 - L2 LINE L2 -1605 1709 1604 1657 160 20 7 chr1 269997215 269997508 -12196156 - AluJo SINE Alu -15 297 1 281 254 15 15 chr1 269997728 269997795 -12195869 + MIR SINE MIR 79 145 -117 795 170 7 0 chr1 269998045 269998186 -12195478 - L1MB3 LINE L1 -10 6173 6032 1163 161 94 5 chr1 269998188 269998411 -12195253 - L1MB3 LINE L1 -243 5940 5698 1458 110 196 8 chr1 270000472 270000727 -12192937 - AluSg1 SINE Alu -6 303 1 400 313 40 0 chr1 270000905 270001055 -12192609 - MIR SINE MIR -35 227 72 2526 240 75 23 chr1 270001071 270001522 -12192142 - L1ME3A LINE L1 -13 6157 5731 2505 117 78 24 chr1 270001522 270001933 -12191731 - Tigger2a DNA MER2_type -1 433 1 2526 240 75 23 chr1 270001933 270003233 -12190431 - L1ME3A LINE L1 -439 5731 3554 949 235 30 124 chr1 270204021 270204672 -11988992 - L1MC5 LINE L1 -775 7186 6616 682 111 0 17 chr1 270204676 270204793 -11988871 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 1751 158 48 7 chr1 270204820 270205111 -11988553 + AluJb SINE Alu 1 303 -9 22 35 0 0 chr1 270205170 270205199 -11988465 + AT_rich Low_complexity Low_complexity 1 29 0 2245 96 0 0 chr1 270205757 270206050 -11987614 - AluSg SINE Alu -17 293 1 2090 123 0 20 chr1 270206050 270206352 -11987312 - AluSx SINE Alu -16 296 1 63 14 0 0 chr1 270206528 270206598 -11987066 + AT_rich Low_complexity Low_complexity 1 70 0 1446 95 0 68 chr1 270206766 270206988 -11986676 + AluSq SINE Alu 1 207 -106 938 98 0 0 chr1 270207146 270207268 -11986396 + AluSg/x SINE Alu 180 301 -11 22 0 0 0 chr1 270207468 270207490 -11986174 + AT_rich Low_complexity Low_complexity 1 22 0 243 235 176 0 chr1 270208416 270208501 -11985163 + MIR SINE MIR 149 248 -14 2169 116 0 7 chr1 270208947 270209248 -11984416 - AluSx SINE Alu -13 299 1 260 236 45 34 chr1 270209725 270209814 -11983850 - L1MC5 LINE L1 -1900 5908 5819 911 126 0 15 chr1 270209892 270210027 -11983637 - AluSq/x SINE Alu -180 133 1 2108 93 0 40 chr1 270210136 270210465 -11983199 - AluY SINE Alu 0 317 1 1325 211 20 30 chr1 270210467 270210765 -11982899 - AluJo SINE Alu -17 295 1 240 270 0 14 chr1 270210774 270210848 -11982816 - L1MB7 LINE L1 -78 6106 6034 1035 250 45 63 chr1 270210901 270211132 -11982532 - L1MC5 LINE L1 -1981 5827 5604 1521 133 47 0 chr1 270211132 270211366 -11982298 - AluSx SINE Alu -15 297 53 1035 250 45 63 chr1 270211366 270211530 -11982134 - L1MC5 LINE L1 -2204 5604 5439 808 200 0 27 chr1 270211533 270211683 -11981981 - AluSg/x SINE Alu -17 295 150 302 223 32 21 chr1 270211732 270211826 -11981838 - L1MC5 LINE L1 -2401 5407 5313 1669 178 10 10 chr1 270211838 270212136 -11981528 - AluJb SINE Alu -14 298 1 276 264 88 40 chr1 270212450 270212575 -11981089 - L1MB7 LINE L1 -2103 5705 5575 291 310 80 5 chr1 270212920 270213120 -11980544 + L1MC4a LINE L1 5715 5929 -1879 2000 128 10 17 chr1 270213259 270213555 -11980109 - AluSx SINE Alu -18 294 1 2086 123 3 0 chr1 270214309 270214602 -11979062 - AluSx SINE Alu -18 294 1 440 280 82 43 chr1 270214662 270214869 -11978795 + L2 LINE L2 2550 2764 -550 228 341 103 58 chr1 270215018 270215241 -11978423 + L2 LINE L2 3026 3258 -14 1670 158 48 7 chr1 270215248 270215541 -11978123 + AluJb SINE Alu 3 312 0 1962 232 67 40 chr1 270215717 270216374 -11977290 - L1MC5 LINE L1 -1725 4421 3742 1385 173 54 61 chr1 270216374 270216669 -11976995 + AluJo SINE Alu 1 293 -19 1962 232 67 40 chr1 270216669 270216713 -11976951 - L1MC5 LINE L1 -2404 3742 3701 770 167 0 0 chr1 270216713 270216833 -11976831 - FLAM_C SINE Alu -23 120 1 273 210 122 0 chr1 270216835 270216909 -11976755 - L1MC5 LINE L1 -2448 3698 3616 631 233 0 0 chr1 270216918 270217038 -11976626 - FLAM_A SINE Alu -13 120 1 1254 126 6 0 chr1 270217220 270217394 -11976270 - AluSg/x SINE Alu -30 282 108 216 0 0 0 chr1 270217884 270217908 -11975756 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1672 189 0 0 chr1 270217910 270218190 -11975474 - AluJb SINE Alu -32 280 1 354 241 219 75 chr1 270219268 270219460 -11974204 - MIR SINE MIR 0 262 31 1813 184 7 0 chr1 270219460 270219764 -11973900 - AluJb SINE Alu -6 306 1 354 241 219 75 chr1 270219764 270219799 -11973865 - MIR SINE MIR -231 31 2 2165 104 0 17 chr1 270219801 270220100 -11973564 - AluSg SINE Alu -16 294 1 2329 84 0 7 chr1 270220106 270220405 -11973259 - AluSq SINE Alu -16 297 1 392 330 5 48 chr1 270220538 270220726 -11972938 - MIR SINE MIR -80 182 3 204 315 102 37 chr1 270220993 270221101 -11972563 - MIR SINE MIR -75 133 19 2301 67 3 24 chr1 270221177 270221474 -11972190 - AluY SINE Alu -20 291 1 320 255 88 0 chr1 270222221 270222323 -11971341 - L1MA9 LINE L1 -22 6290 6180 688 161 23 39 chr1 270222363 270222493 -11971171 - FLAM_C SINE Alu -5 128 1 311 196 128 10 chr1 270223114 270223216 -11970448 + MER103 DNA DNA 2 115 -51 1639 196 0 13 chr1 270223636 270223942 -11969722 - AluJb SINE Alu -9 303 2 550 331 27 16 chr1 270224773 270224957 -11968707 - MIR3 SINE MIR -13 195 10 190 316 18 0 chr1 270225424 270225481 -11968183 + MER5A DNA MER1_type 132 189 0 273 283 0 0 chr1 270225688 270225748 -11967916 - MER91A DNA MER1_type 0 190 131 389 379 28 17 chr1 270225780 270225957 -11967707 - MER91A DNA MER1_type -17 179 1 257 403 84 8 chr1 270226272 270226391 -11967273 - L2 LINE L2 -18 3254 3127 728 227 22 54 chr1 270226715 270226824 -11966840 + MIR SINE MIR 12 115 -147 2063 109 3 3 chr1 270226824 270227131 -11966533 - AluSx SINE Alu 0 307 1 728 227 22 54 chr1 270227131 270227205 -11966459 + MIR SINE MIR 115 190 -72 2054 140 7 10 chr1 270227402 270227710 -11965954 + AluSx SINE Alu 3 309 -3 599 175 56 24 chr1 270228165 270228291 -11965373 + FRAM SINE Alu 25 154 -22 876 232 69 24 chr1 270228823 270228990 -11964674 + Charlie1a DNA MER1_type 3 186 -2575 2335 88 0 0 chr1 270228990 270229285 -11964379 - AluSx SINE Alu -13 299 5 876 232 69 24 chr1 270229285 270229363 -11964301 + Charlie1a DNA MER1_type 186 259 -1196 299 200 0 0 chr1 270229797 270229862 -11963802 - L1MB2 LINE L1 -42 6129 6065 426 20 0 0 chr1 270229911 270229962 -11963702 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 377 237 24 103 chr1 270230227 270230509 -11963155 - L1MB2 LINE L1 -706 5458 5255 29 28 0 0 chr1 270230680 270230716 -11962948 + AT_rich Low_complexity Low_complexity 1 36 0 482 238 63 0 chr1 270231559 270231685 -11961979 - L1MA9 LINE L1 0 6312 6179 1137 143 18 58 chr1 270231715 270231939 -11961725 + MER20 DNA MER1_type 4 218 -1 492 318 116 8 chr1 270232865 270233107 -11960557 + L2 LINE L2 3046 3313 0 441 218 100 0 chr1 270233110 270233220 -11960444 - MIR SINE MIR -22 240 120 204 132 33 66 chr1 270233472 270233563 -11960101 + (TTA)n Simple_repeat Simple_repeat 2 89 0 2107 80 0 50 chr1 270235044 270235227 -11958437 - AluY SINE Alu 0 315 153 2462 64 0 0 chr1 270235227 270235525 -11958139 - AluSc SINE Alu -11 298 1 2107 80 0 50 chr1 270235525 270235671 -11957993 - AluY SINE Alu -162 153 1 2188 106 0 0 chr1 270235827 270236134 -11957530 - AluSx SINE Alu 0 307 1 1243 132 11 6 chr1 270236839 270237021 -11956643 + AluJo SINE Alu 5 187 -125 1245 98 0 0 chr1 270237023 270237186 -11956478 - AluY SINE Alu -148 163 1 205 259 18 45 chr1 270237229 270237341 -11956323 + (TAAA)n Simple_repeat Simple_repeat 2 110 0 1852 114 10 40 chr1 270237502 270237799 -11955865 + AluSx SINE Alu 1 288 -24 30 0 0 0 chr1 270237914 270237944 -11955720 + AT_rich Low_complexity Low_complexity 1 30 0 381 201 134 22 chr1 270237974 270238108 -11955556 - L1ME4a LINE L1 -4 6117 5969 2221 55 29 0 chr1 270238463 270238763 -11954901 + AluY SINE Alu 1 308 0 1624 167 26 26 chr1 270239799 270239981 -11953683 - AluJb SINE Alu 0 312 128 2158 118 0 0 chr1 270239981 270240270 -11953394 - AluSx SINE Alu -23 289 1 1624 167 26 26 chr1 270240270 270240399 -11953265 - AluJb SINE Alu -183 129 1 260 307 0 0 chr1 270241122 270241197 -11952467 + MLT1K LTR MaLR 2 76 -512 29 28 0 0 chr1 270241292 270241328 -11952336 + AT_rich Low_complexity Low_complexity 1 36 0 274 240 55 55 chr1 270241372 270241428 -11952236 - Charlie7 DNA MER1_type -2070 542 487 2118 217 96 17 chr1 270241428 270241949 -11951715 - MER68 LTR ERV1 0 562 1 274 240 55 55 chr1 270241949 270242038 -11951626 - Charlie7 DNA MER1_type -2124 488 397 653 201 0 71 chr1 270242304 270242473 -11951191 - MER5A DNA MER1_type 0 189 33 611 164 94 31 chr1 270242484 270242612 -11951052 + AluJb SINE Alu 158 293 -19 289 189 0 0 chr1 270242612 270242665 -11950999 - MER5A DNA MER1_type -135 54 2 285 349 0 0 chr1 270242750 270242833 -11950831 - Charlie7 DNA MER1_type -2312 300 218 591 321 72 37 chr1 270243377 270243779 -11949885 + HERVL LTR ERVL 1755 2170 -3484 387 0 0 0 chr1 270243897 270243940 -11949724 + (CA)n Simple_repeat Simple_repeat 2 44 0 2256 75 10 0 chr1 270243983 270244277 -11949387 - AluSx SINE Alu -15 297 1 30 59 0 0 chr1 270244900 270244951 -11948713 + AT_rich Low_complexity Low_complexity 1 51 0 24 53 0 0 chr1 270245033 270245071 -11948593 + AT_rich Low_complexity Low_complexity 1 38 0 948 242 27 0 chr1 270246035 270246254 -11947410 + MIR SINE MIR 23 247 -15 21 36 0 0 chr1 270246550 270246578 -11947086 + AT_rich Low_complexity Low_complexity 1 28 0 525 146 45 0 chr1 270247948 270248059 -11945605 - L1MB7 LINE L1 -26 6152 6041 363 219 69 176 chr1 270248808 270249127 -11944537 - L2 LINE L2 -1 3312 3028 253 233 55 14 chr1 270249103 270249176 -11944488 - L2 LINE L2 -1713 1601 1526 * 2291 62 0 0 chr1 270249721 270249995 -11943669 - AluSx SINE Alu -15 297 24 2211 96 3 0 chr1 270250168 270250460 -11943204 + AluSc SINE Alu 1 293 -16 2146 94 44 7 chr1 270252716 270253013 -11940651 + AluSx SINE Alu 5 312 0 1570 221 3 0 chr1 270253111 270253410 -11940254 - AluJo SINE Alu -12 300 1 2240 89 26 0 chr1 270253811 270254113 -11939551 - AluSp SINE Alu -1 312 3 232 318 61 0 chr1 270254421 270254487 -11939177 + L2 LINE L2 3186 3255 -17 30 27 0 0 chr1 270254519 270254556 -11939108 + AT_rich Low_complexity Low_complexity 1 37 0 302 200 13 13 chr1 270254626 270254701 -11938963 - MIR SINE MIR -94 168 94 2277 113 0 3 chr1 270254811 270255122 -11938542 + AluSx SINE Alu 1 310 -2 252 0 0 0 chr1 270255122 270255150 -11938514 + (TA)n Simple_repeat Simple_repeat 2 29 0 2179 99 3 0 chr1 270255171 270255454 -11938210 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr1 270255454 270255487 -11938177 + (CA)n Simple_repeat Simple_repeat 2 34 0 960 139 90 12 chr1 270255885 270256051 -11937613 + AluJb SINE Alu 134 312 0 184 266 51 38 chr1 270256076 270256155 -11937509 - MIR SINE MIR -3 259 180 656 312 157 40 chr1 270256567 270257147 -11936517 + L2 LINE L2 2187 2834 -480 2229 105 3 0 chr1 270257885 270258180 -11935484 - AluSg SINE Alu -14 296 1 1499 182 62 7 chr1 270258521 270258812 -11934852 - AluJb SINE Alu -3 309 3 1989 121 0 7 chr1 270258843 270259154 -11934510 + AluSg SINE Alu 1 309 0 371 245 20 10 chr1 270259233 270259335 -11934329 + L1MA9 LINE L1 5985 6087 -225 986 159 62 17 chr1 270259344 270259520 -11934144 - AluJb SINE Alu -128 184 1 2246 109 0 0 chr1 270259520 270259842 -11933822 - AluSq SINE Alu 0 322 1 1381 179 13 62 chr1 270259847 270260154 -11933510 - AluJo SINE Alu -20 292 1 2071 134 0 3 chr1 270260192 270260500 -11933164 + AluSx SINE Alu 1 307 0 22 0 0 0 chr1 270260767 270260789 -11932875 + AT_rich Low_complexity Low_complexity 1 22 0 2013 130 17 3 chr1 270261039 270261340 -11932324 - AluSx SINE Alu -7 305 1 273 98 0 0 chr1 270261345 270261386 -11932278 + (T)n Simple_repeat Simple_repeat 1 41 0 1864 134 29 0 chr1 270261528 270261846 -11931818 - AluSx SINE Alu 0 326 1 396 216 144 24 chr1 270262374 270262499 -11931165 + MIR SINE MIR 121 260 -2 183 220 0 0 chr1 270262681 270262731 -11930933 + GA-rich Low_complexity Low_complexity 1 50 0 2485 71 0 0 chr1 270263036 270263345 -11930319 + AluY SINE Alu 1 309 -2 1513 164 0 70 chr1 270263364 270263694 -11929970 + AluJb SINE Alu 1 307 -5 2072 113 0 29 chr1 270263841 270264150 -11929514 + AluSg SINE Alu 1 300 -10 234 345 11 118 chr1 270264819 270265015 -11928649 + L2 LINE L2 2933 3076 -196 2141 104 0 41 chr1 270265015 270265157 -11928507 + AluSx SINE Alu 4 150 -162 2393 61 0 10 chr1 270265157 270265453 -11928211 + AluY SINE Alu 1 293 -18 2141 104 0 41 chr1 270265453 270265628 -11928036 + AluSx SINE Alu 150 308 -4 234 345 11 118 chr1 270265628 270265787 -11927877 + L2 LINE L2 3076 3250 -22 298 155 86 0 chr1 270266415 270266473 -11927191 + L2 LINE L2 3209 3271 -1 228 35 0 0 chr1 270266899 270266928 -11926736 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 309 298 12 12 chr1 270267362 270267446 -11926218 + L2 LINE L2 3158 3241 -31 25 0 0 0 chr1 270268462 270268487 -11925177 + AT_rich Low_complexity Low_complexity 1 25 0 327 255 106 0 chr1 270268546 270268640 -11925024 - L1MC4 LINE L1 -1339 6703 6600 1955 151 0 16 chr1 270268998 270269302 -11924362 + AluSx SINE Alu 1 299 -13 210 325 128 34 chr1 270269411 270269528 -11924136 + L2 LINE L2 3136 3263 -9 1775 172 12 38 chr1 270269769 270270089 -11923575 + AluJo SINE Alu 1 312 0 545 293 49 61 chr1 270270629 270270780 -11922884 + MIR SINE MIR 3 151 -111 2230 121 7 0 chr1 270270780 270271087 -11922577 + AluSx SINE Alu 1 309 -3 545 293 49 61 chr1 270271087 270271198 -11922466 + MIR SINE MIR 151 262 0 1993 140 7 3 chr1 270272813 270273113 -11920551 + AluSx SINE Alu 1 301 -11 1892 122 36 16 chr1 270273834 270274138 -11919526 + MER44D DNA MER2_type 30 609 0 268 236 14 28 chr1 270274284 270274356 -11919308 + MIR SINE MIR 176 246 -16 333 114 25 38 chr1 270274504 270274583 -11919081 + (TATG)n Simple_repeat Simple_repeat 2 79 0 25 51 0 0 chr1 270275171 270275210 -11918454 + AT_rich Low_complexity Low_complexity 1 39 0 27 81 0 0 chr1 270275269 270275331 -11918333 + AT_rich Low_complexity Low_complexity 1 62 0 2120 98 21 3 chr1 270275335 270275621 -11918043 + AluSx SINE Alu 1 291 -21 234 254 0 0 chr1 270275627 270275690 -11917974 + L1MC4 LINE L1 6648 6710 -1332 27 0 0 0 chr1 270276058 270276085 -11917579 + AT_rich Low_complexity Low_complexity 1 27 0 1660 173 3 25 chr1 270276093 270276377 -11917287 + AluJo SINE Alu 5 282 -30 297 0 0 0 chr1 270276397 270276430 -11917234 + (CA)n Simple_repeat Simple_repeat 2 34 0 29 98 0 0 chr1 270276449 270276541 -11917123 + AT_rich Low_complexity Low_complexity 1 92 0 2286 81 7 19 chr1 270276833 270277140 -11916524 + AluSq SINE Alu 1 303 -10 313 157 0 0 chr1 270277470 270277521 -11916143 + Alu SINE Alu 249 299 -3 339 157 0 0 chr1 270277965 270278035 -11915629 + GA-rich Low_complexity Low_complexity 2 71 0 1745 148 46 0 chr1 270279704 270279988 -11913676 - AluSx SINE Alu -1 311 15 896 161 66 0 chr1 270280244 270280381 -11913283 + FRAM SINE Alu 1 146 -30 276 100 0 0 chr1 270280609 270280649 -11913015 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2096 98 11 0 chr1 270280649 270280926 -11912738 - AluSp SINE Alu -33 280 1 1740 173 11 0 chr1 270281754 270282032 -11911632 - AluJo SINE Alu -31 281 1 2153 128 0 3 chr1 270282113 270282426 -11911238 + AluSx SINE Alu 1 312 0 1890 155 13 0 chr1 270282482 270282785 -11910879 - AluSq SINE Alu -6 307 1 2266 80 0 43 chr1 270283161 270283487 -11910177 + AluSp SINE Alu 1 312 -1 21 82 0 0 chr1 270284078 270284127 -11909537 + AT_rich Low_complexity Low_complexity 1 49 0 270 293 0 61 chr1 270284256 270284338 -11909326 - L2 LINE L2 0 3272 3196 2366 254 125 42 chr1 270284382 270285443 -11908221 + L2 LINE L2 954 2102 -1212 1265 181 198 43 chr1 270285993 270286527 -11907137 - L1M3 LINE L1 -559 5621 4969 2071 125 0 0 chr1 270287631 270287935 -11905729 - AluSg SINE Alu 0 305 2 403 321 15 23 chr1 270288944 270289075 -11904589 + L2 LINE L2 3139 3268 -4 2269 108 0 0 chr1 270289128 270289423 -11904241 + AluSx SINE Alu 1 295 -17 298 107 36 0 chr1 270289928 270289984 -11903680 + (TA)n Simple_repeat Simple_repeat 1 58 0 216 0 0 0 chr1 270290059 270290083 -11903581 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1537 132 0 0 chr1 270290087 270290299 -11903365 - AluSg/x SINE Alu -23 287 76 1632 186 27 0 chr1 270290355 270290650 -11903014 + AluJb SINE Alu 2 304 -8 2075 129 0 10 chr1 270290805 270291116 -11902548 - AluSg SINE Alu -2 308 1 2113 87 3 27 chr1 270291506 270291805 -11901859 - AluSg SINE Alu -18 292 1 949 118 0 0 chr1 270291805 270291941 -11901723 - AluSq/x SINE Alu -177 136 1 2401 80 3 0 chr1 270292859 270293160 -11900504 - AluSx SINE Alu -10 302 1 220 330 122 35 chr1 270294295 270294410 -11899254 - MIR SINE MIR -63 145 21 2237 103 3 3 chr1 270295096 270295407 -11898257 - AluY SINE Alu 0 311 1 456 321 36 26 chr1 270295589 270295782 -11897882 + MIR3 SINE MIR 9 203 -5 2414 81 3 0 chr1 270296370 270296667 -11896997 - AluSx SINE Alu -14 298 1 381 98 0 0 chr1 270296799 270296850 -11896814 + MER105 DNA DNA 82 132 -72 2419 69 7 0 chr1 270297135 270297439 -11896225 - AluSp SINE Alu -7 306 1 1069 163 102 5 chr1 270298093 270298308 -11895356 - MER46A DNA MER2_type 0 236 1 1640 192 3 0 chr1 270298574 270298860 -11894804 - AluJb SINE Alu -23 289 3 2188 77 42 3 chr1 270298869 270299154 -11894510 - AluY SINE Alu -15 296 1 24 32 0 0 chr1 270299483 270299514 -11894150 + AT_rich Low_complexity Low_complexity 1 31 0 1871 145 23 16 chr1 270299883 270300187 -11893477 - AluJb SINE Alu -6 306 1 2249 106 0 22 chr1 270300422 270300734 -11892930 + AluSq SINE Alu 1 305 -8 1004 238 99 40 chr1 270301077 270301480 -11892184 - HAL1 LINE L1 -628 1879 1453 2108 134 0 0 chr1 270301507 270301812 -11891852 - AluSx SINE Alu -7 305 1 1385 281 98 73 chr1 270301929 270302098 -11891566 - HAL1 LINE L1 -1113 1394 1231 906 203 122 66 chr1 270302098 270302369 -11891295 - AluJo SINE Alu -15 287 2 1385 281 98 73 chr1 270302369 270302553 -11891111 - HAL1 LINE L1 -1276 1231 1053 2340 95 0 3 chr1 270302553 270302859 -11890805 - AluSg SINE Alu -5 305 1 1385 281 98 73 chr1 270302859 270303785 -11889879 - HAL1 LINE L1 -1454 1053 83 240 194 16 32 chr1 270303791 270303853 -11889811 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 183 80 0 0 chr1 270304250 270304275 -11889389 + (TATATG)n Simple_repeat Simple_repeat 3 27 0 2276 104 0 10 chr1 270304594 270304903 -11888761 + AluSp SINE Alu 1 306 -7 1657 139 110 7 chr1 270304982 270305255 -11888409 + AluSg SINE Alu 1 301 -9 2082 113 28 7 chr1 270305275 270305566 -11888098 + AluSx SINE Alu 1 297 -15 2243 113 3 7 chr1 270305711 270306021 -11887643 + AluSc SINE Alu 1 309 0 984 258 195 28 chr1 270306021 270306812 -11886852 + HAL1 LINE L1 1305 2227 -280 1985 172 0 0 chr1 270306861 270307169 -11886495 + AluSx SINE Alu 1 308 -4 228 146 55 0 chr1 270307526 270307581 -11886083 + T-rich Low_complexity Low_complexity 3 60 0 396 321 30 0 chr1 270307589 270307720 -11885944 + MIR SINE MIR 118 252 -10 1657 162 70 0 chr1 270307899 270308171 -11885493 + AluJo SINE Alu 1 291 -21 206 231 15 0 chr1 270308172 270308237 -11885427 + GA-rich Low_complexity Low_complexity 2 67 0 186 43 0 0 chr1 270308237 270308260 -11885404 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 938 201 13 0 chr1 270308277 270308436 -11885228 + FRAM SINE Alu 1 161 -5 2222 84 20 7 chr1 270308470 270308766 -11884898 + AluY SINE Alu 1 300 -11 440 209 94 64 chr1 270308875 270309032 -11884632 - L1ME1 LINE L1 0 6178 6009 187 216 0 78 chr1 270309085 270309136 -11884528 + L2 LINE L2 3240 3286 -27 23 0 0 0 chr1 270311336 270311359 -11882305 + AT_rich Low_complexity Low_complexity 1 23 0 1861 147 19 29 chr1 270311533 270311847 -11881817 + AluJb SINE Alu 1 311 -1 2189 103 0 7 chr1 270311898 270312189 -11881475 - AluSc SINE Alu -20 289 1 2224 76 50 20 chr1 270312424 270312726 -11880938 - AluSq SINE Alu -2 311 1 28 29 0 0 chr1 270313041 270313076 -11880588 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 270313619 270313657 -11880007 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr1 270314194 270314219 -11879445 + AT_rich Low_complexity Low_complexity 1 25 0 1151 51 0 0 chr1 270314365 270314502 -11879162 + L1PA6 LINE L1 6018 6154 0 181 0 69 0 chr1 270314515 270314544 -11879120 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr1 270315509 270315540 -11878124 + (T)n Simple_repeat Simple_repeat 1 31 0 2284 97 0 10 chr1 270316844 270317154 -11876510 - AluSc SINE Alu -2 307 1 1970 112 7 52 chr1 270317154 270317459 -11876205 - AluSx SINE Alu -21 291 1 369 206 53 46 chr1 270317508 270317639 -11876025 + L1MC5 LINE L1 7512 7643 -318 2253 98 0 3 chr1 270317639 270317935 -11875729 + AluSg SINE Alu 1 295 -15 574 239 11 45 chr1 270317943 270318119 -11875545 + L1MC5 LINE L1 7747 7916 -45 443 73 15 0 chr1 270318138 270318206 -11875458 + (TA)n Simple_repeat Simple_repeat 1 69 0 920 126 0 70 chr1 270318220 270318363 -11875301 - FLAM_C SINE Alu 0 133 1 2263 113 0 0 chr1 270318604 270318914 -11874750 - AluSg SINE Alu 0 310 1 308 154 77 0 chr1 270319006 270319058 -11874606 - L2 LINE L2 -4 3309 3254 2028 131 7 7 chr1 270319374 270319671 -11873993 - AluSp SINE Alu -4 309 13 2199 105 0 7 chr1 270320036 270320332 -11873332 + AluSq SINE Alu 1 294 -19 251 166 90 0 chr1 270320470 270320532 -11873132 + L1P2 LINE L1 5375 5447 -708 2097 98 10 24 chr1 270320532 270320828 -11872836 - AluSc SINE Alu -17 292 1 337 264 149 8 chr1 270320914 270321035 -11872629 + L1MC4a LINE L1 5787 5924 -1884 1425 73 6 0 chr1 270321043 270321222 -11872442 - AluSc SINE Alu -6 303 124 2307 87 0 0 chr1 270321235 270321521 -11872143 - AluY SINE Alu -25 286 1 1008 181 54 10 chr1 270321612 270321816 -11871848 - MER58A DNA MER1_type 0 224 12 21 0 0 0 chr1 270321973 270321994 -11871670 + AT_rich Low_complexity Low_complexity 1 21 0 2122 129 0 3 chr1 270322016 270322318 -11871346 + AluSx SINE Alu 1 301 -11 1005 43 0 0 chr1 270322318 270322435 -11871229 + AluY SINE Alu 176 292 -19 2358 85 0 22 chr1 270322437 270322755 -11870909 + AluY SINE Alu 1 311 0 2156 130 0 3 chr1 270325255 270325562 -11868102 - AluSx SINE Alu -6 306 1 21 0 0 0 chr1 270325661 270325682 -11867982 + AT_rich Low_complexity Low_complexity 1 21 0 489 284 19 43 chr1 270325766 270325928 -11867736 - MER5B DNA MER1_type -20 158 1 2260 87 0 17 chr1 270326010 270326309 -11867355 + AluY SINE Alu 1 294 -17 2286 83 30 3 chr1 270326330 270326632 -11867032 + AluSq SINE Alu 1 310 -3 346 277 77 32 chr1 270326812 270326967 -11866697 - MER103 DNA DNA -3 163 2 2229 111 0 7 chr1 270327231 270327537 -11866127 - AluY SINE Alu -3 308 5 2383 103 0 0 chr1 270327620 270327932 -11865732 - AluSx SINE Alu 0 312 1 654 199 75 14 chr1 270327935 270328081 -11865583 - FRAM SINE Alu -8 158 4 2271 97 3 0 chr1 270328234 270328522 -11865142 + AluSp SINE Alu 1 289 -24 1512 178 26 36 chr1 270328845 270328988 -11864676 + AluJb SINE Alu 1 144 -168 2420 70 0 7 chr1 270328988 270329287 -11864377 + AluSg SINE Alu 1 297 -13 1512 178 26 36 chr1 270329287 270329446 -11864218 + AluJb SINE Alu 144 300 -12 1441 167 44 17 chr1 270329700 270329993 -11863671 - AluJo SINE Alu -11 301 1 435 198 10 0 chr1 270330287 270330383 -11863281 - L1MC4 LINE L1 0 8042 7946 303 231 54 68 chr1 270331635 270331708 -11861956 - L1MC5 LINE L1 -108 7853 7781 1945 141 7 0 chr1 270331708 270332006 -11861658 - AluSx SINE Alu -12 300 1 303 231 54 68 chr1 270332006 270332079 -11861585 - L1MC5 LINE L1 -180 7781 7709 2100 114 13 10 chr1 270332091 270332390 -11861274 - AluSq SINE Alu -13 300 1 2096 129 7 0 chr1 270332413 270332708 -11860956 - AluSg SINE Alu -13 297 1 1521 165 0 0 chr1 270332748 270332990 -11860674 - AluJb SINE Alu -13 299 58 886 126 0 70 chr1 270332999 270333142 -11860522 - FLAM_C SINE Alu 0 133 1 232 340 134 51 chr1 270333204 270333534 -11860130 + L2 LINE L2 1305 1606 -1708 2358 90 3 6 chr1 270333534 270333845 -11859819 - AluSq SINE Alu -3 310 1 232 340 134 51 chr1 270333845 270334943 -11858721 + L2 LINE L2 1606 2852 -462 222 238 0 63 chr1 270334946 270335009 -11858655 - L2 LINE L2 -52 3220 3162 235 253 169 0 chr1 270335158 270335241 -11858423 + L2 LINE L2 3217 3313 0 1869 152 3 26 chr1 270335675 270335810 -11857854 + AluJb SINE Alu 2 139 -173 2131 107 3 3 chr1 270335810 270336101 -11857563 + AluSg SINE Alu 1 291 -19 528 59 0 0 chr1 270336102 270336170 -11857494 + (TA)n Simple_repeat Simple_repeat 1 68 0 2248 124 0 0 chr1 270336173 270336472 -11857192 + AluSx SINE Alu 1 299 -13 1869 152 3 26 chr1 270336472 270336633 -11857031 + AluJb SINE Alu 141 297 -15 1728 155 45 10 chr1 270337394 270337685 -11855979 - AluJo SINE Alu -8 304 4 2486 65 0 0 chr1 270337719 270338013 -11855651 - AluY SINE Alu -17 294 1 2125 113 3 10 chr1 270338252 270338552 -11855112 + AluSx SINE Alu 1 298 -14 2216 107 0 3 chr1 270338808 270339107 -11854557 + AluSx SINE Alu 1 298 -14 2182 122 0 7 chr1 270339923 270340227 -11853437 - AluSx SINE Alu -10 302 1 1075 210 10 5 chr1 270340272 270340472 -11853192 - MER20 DNA MER1_type -1 218 18 189 296 86 0 chr1 270341204 270341285 -11852379 + L2 LINE L2 3179 3266 -47 2023 115 18 0 chr1 270341608 270341918 -11851746 + AluSx SINE Alu 1 315 0 2594 49 0 3 chr1 270342563 270342871 -11850793 - AluY SINE Alu -4 307 1 2342 99 0 0 chr1 270343080 270343382 -11850282 + AluY SINE Alu 1 302 -9 364 277 62 0 chr1 270343892 270344004 -11849660 - L1MEd LINE L1 -5484 635 517 1504 194 7 23 chr1 270344712 270345021 -11848643 - AluJo SINE Alu 0 312 9 2111 139 0 0 chr1 270345057 270345360 -11848304 + AluSx SINE Alu 1 303 -9 442 256 37 74 chr1 270345515 270345730 -11847934 - L1MC4a LINE L1 -1899 5909 5703 1404 151 115 14 chr1 270345732 270346011 -11847653 + AluJo SINE Alu 1 307 -5 915 178 6 12 chr1 270346025 270346188 -11847476 + FRAM SINE Alu 1 159 -17 607 234 157 68 chr1 270346189 270346400 -11847264 - L1MC4a LINE L1 -2099 5709 5455 1809 159 10 3 chr1 270346400 270346696 -11846968 + AluJo SINE Alu 1 298 -14 607 234 157 68 chr1 270346696 270346822 -11846842 - L1MC4a LINE L1 -2353 5455 5342 2225 93 7 13 chr1 270346907 270347217 -11846447 - AluSp SINE Alu -5 308 1 808 208 7 13 chr1 270347220 270347374 -11846290 - FRAM SINE Alu -20 156 4 2375 204 113 75 chr1 270347473 270347805 -11845859 - L1ME1 LINE L1 0 6166 5848 1505 191 11 0 chr1 270347805 270348078 -11845586 - AluJb SINE Alu -33 279 4 2375 204 113 75 chr1 270348078 270348182 -11845482 - L1ME1 LINE L1 -318 5848 5749 362 100 17 0 chr1 270348182 270348242 -11845422 + (TATTG)n Simple_repeat Simple_repeat 5 65 0 2029 128 0 7 chr1 270348242 270348524 -11845140 - AluSx SINE Alu -32 280 1 2375 204 113 75 chr1 270348524 270349030 -11844634 - L1ME1 LINE L1 -417 5749 5186 2274 106 3 0 chr1 270349030 270349332 -11844332 - AluSx SINE Alu -9 303 1 2375 204 113 75 chr1 270349332 270349385 -11844279 - L1ME1 LINE L1 -980 5186 5136 1801 106 4 0 chr1 270349400 270349636 -11844028 + AluSx SINE Alu 1 237 -75 285 349 0 0 chr1 270349791 270349874 -11843790 - Charlie7 DNA MER1_type -2312 300 218 598 316 75 40 chr1 270350418 270350820 -11842844 + HERVL LTR ERVL 1755 2170 -3484 423 0 0 0 chr1 270350938 270350985 -11842679 + (CA)n Simple_repeat Simple_repeat 2 48 0 2149 66 11 0 chr1 270351028 270351299 -11842365 - AluSx SINE Alu -15 297 24 903 237 5 14 chr1 270351320 270351527 -11842137 - AluJo SINE Alu -19 293 89 2198 103 3 7 chr1 270351563 270351864 -11841800 - AluSx SINE Alu -12 300 1 1048 148 0 19 chr1 270351896 270352058 -11841606 - FRAM SINE Alu -11 165 7 22 35 0 0 chr1 270352360 270352389 -11841275 + AT_rich Low_complexity Low_complexity 1 29 0 1707 169 17 7 chr1 270352430 270352725 -11840939 - AluJb SINE Alu -14 298 1 270 0 0 0 chr1 270353556 270353586 -11840078 + (CA)n Simple_repeat Simple_repeat 1 30 0 198 266 203 0 chr1 270353729 270353808 -11839856 - MIR SINE MIR -102 160 66 21 57 0 0 chr1 270353949 270353984 -11839680 + AT_rich Low_complexity Low_complexity 1 35 0 531 67 0 122 chr1 270354138 270354177 -11839487 + MADE1 DNA Mariner 1 25 -55 1689 129 42 42 chr1 270354177 270354488 -11839176 - AluSx SINE Alu 0 312 2 531 67 0 122 chr1 270354488 270354538 -11839126 + MADE1 DNA Mariner 25 79 -1 680 166 110 31 chr1 270354973 270355136 -11838528 + MER104 DNA MER2_type 5 180 0 1800 121 4 26 chr1 270355236 270355500 -11838164 + AluSx SINE Alu 1 258 -54 35 54 0 0 chr1 270355836 270355892 -11837772 + AT_rich Low_complexity Low_complexity 1 56 0 293 338 29 15 chr1 270355909 270356045 -11837619 - MIR SINE MIR -105 157 20 231 345 78 0 chr1 270356160 270356276 -11837388 - L2 LINE L2 -10 3262 3138 29 0 0 0 chr1 270356596 270356625 -11837039 + AT_rich Low_complexity Low_complexity 1 29 0 1967 132 3 3 chr1 270356626 270356913 -11836751 - AluSx SINE Alu -25 287 1 2257 122 0 0 chr1 270356928 270357232 -11836432 - AluSq SINE Alu -9 304 1 1393 165 29 8 chr1 270357245 270357488 -11836176 - AluJo SINE Alu -43 269 22 2412 87 0 0 chr1 270358267 270358578 -11835086 - AluY SINE Alu 0 311 1 205 259 18 45 chr1 270358621 270358733 -11834931 + (TAAA)n Simple_repeat Simple_repeat 2 110 0 281 273 61 0 chr1 270358851 270358950 -11834714 + L1MC4 LINE L1 6599 6703 -1339 678 264 89 24 chr1 270359221 270359467 -11834197 - L1MC4 LINE L1 -768 7274 7013 281 192 128 0 chr1 270359469 270359547 -11834117 - L1ME2 LINE L1 -1 6163 6076 1526 231 66 59 chr1 270359571 270359808 -11833856 - L1MC4 LINE L1 -1034 7008 6774 1774 106 45 8 chr1 270359808 270360054 -11833610 + AluSg SINE Alu 45 299 -11 1526 231 66 59 chr1 270360054 270360190 -11833474 - L1MC4 LINE L1 -1268 6774 6640 186 43 0 0 chr1 270360190 270360213 -11833451 + (TG)n Simple_repeat Simple_repeat 2 24 0 1526 231 66 59 chr1 270360213 270360384 -11833280 - L1MC4 LINE L1 -1402 6640 6459 1511 78 16 0 chr1 270360648 270360868 -11832796 - AluY SINE Alu 0 312 90 503 44 44 0 chr1 270360868 270360936 -11832728 - AluY SINE Alu -150 161 91 317 271 19 28 chr1 270361036 270361143 -11832521 + G-rich Low_complexity Low_complexity 4 109 0 683 136 168 8 chr1 270361178 270361303 -11832361 - AluSg SINE Alu -164 146 2 2137 131 0 3 chr1 270361947 270362252 -11831412 + AluSx SINE Alu 1 304 -8 341 235 88 29 chr1 270362293 270362429 -11831235 + MIR SINE MIR 105 248 -14 25 31 0 0 chr1 270362436 270362468 -11831196 + AT_rich Low_complexity Low_complexity 1 32 0 2373 88 0 23 chr1 270362523 270362828 -11830836 - AluSc SINE Alu -11 298 1 868 102 0 39 chr1 270362852 270362980 -11830684 - FLAM_C SINE Alu -1 142 20 940 167 0 0 chr1 270362980 270363142 -11830522 + AluY SINE Alu 45 206 -105 1105 170 83 11 chr1 270363249 270363514 -11830150 + MER33 DNA MER1_type 41 324 0 548 240 55 69 chr1 270363617 270363796 -11829868 - MIR SINE MIR -48 214 37 2507 60 7 0 chr1 270363796 270364097 -11829567 - AluY SINE Alu -8 303 1 548 240 55 69 chr1 270364097 270364134 -11829530 - MIR SINE MIR -225 37 1 1599 185 10 32 chr1 270364317 270364631 -11829033 + AluJo SINE Alu 1 307 -5 1818 158 30 0 chr1 270364949 270365246 -11828418 + AluJb SINE Alu 1 306 -6 1143 183 136 79 chr1 270365814 270366218 -11827446 + MLT1D LTR MaLR 3 429 -76 504 290 45 40 chr1 270366375 270366551 -11827113 + MIR SINE MIR 23 202 -60 1677 191 0 13 chr1 270366551 270366850 -11826814 + AluJb SINE Alu 1 295 -17 504 290 45 40 chr1 270366850 270366897 -11826767 + MIR SINE MIR 202 247 -15 1897 129 61 0 chr1 270367113 270367391 -11826273 + AluY SINE Alu 1 295 -16 1720 159 0 28 chr1 270367539 270367829 -11825835 - AluSg SINE Alu -23 287 6 1595 211 0 19 chr1 270368036 270368354 -11825310 + AluJo SINE Alu 1 312 0 1003 157 19 0 chr1 270368709 270368868 -11824796 - FRAM SINE Alu -15 161 1 1945 124 3 59 chr1 270368958 270369281 -11824383 - AluSx SINE Alu -7 305 1 7323 87 15 75 chr1 270369311 270371129 -11822535 + SVA Other Other 3 1385 -1 21 0 0 0 chr1 270371280 270371301 -11822363 + AT_rich Low_complexity Low_complexity 1 21 0 297 330 17 8 chr1 270371344 270371462 -11822202 + MIR SINE MIR 63 181 -81 1657 182 7 17 chr1 270371604 270371906 -11821758 - AluJb SINE Alu -13 299 1 1367 149 24 0 chr1 270372081 270372337 -11821327 + AluJb SINE Alu 72 332 0 1947 131 33 0 chr1 270372436 270372746 -11820918 + AluSx SINE Alu 1 319 0 2116 101 7 4 chr1 270372943 270373244 -11820420 + AluSc SINE Alu 1 302 0 1876 171 7 3 chr1 270373627 270373936 -11819728 + AluSx SINE Alu 1 310 -2 1760 150 52 0 chr1 270373992 270374259 -11819405 - AluSx SINE Alu -25 287 7 234 247 0 25 chr1 270374407 270374488 -11819176 + L1MB8 LINE L1 6099 6177 -1 934 126 0 15 chr1 270374498 270374633 -11819031 + AluSq/x SINE Alu 1 133 -180 271 236 45 34 chr1 270374711 270374800 -11818864 + L1MC4a LINE L1 5819 5908 -1900 2202 116 0 7 chr1 270375277 270375578 -11818086 + AluSx SINE Alu 1 299 -13 216 235 176 0 chr1 270376024 270376109 -11817555 - MIR SINE MIR -14 248 149 21 0 0 0 chr1 270377035 270377056 -11816608 + AT_rich Low_complexity Low_complexity 1 21 0 2266 109 0 7 chr1 270377255 270377558 -11816106 - AluSx SINE Alu -11 301 1 2224 107 0 3 chr1 270377577 270377867 -11815797 - AluSx SINE Alu -23 289 1 270 0 0 0 chr1 270377888 270377918 -11815746 + (TA)n Simple_repeat Simple_repeat 2 31 0 2271 117 0 3 chr1 270377918 270378227 -11815437 - AluSx SINE Alu -4 308 1 272 200 13 13 chr1 270378337 270378412 -11815252 + MIR SINE MIR 94 168 -94 30 27 0 0 chr1 270378482 270378519 -11815145 + AT_rich Low_complexity Low_complexity 1 37 0 202 318 61 0 chr1 270378551 270378617 -11815047 - L2 LINE L2 -17 3255 3186 1001 172 67 76 chr1 270378960 270379198 -11814466 - AluJo SINE Alu -76 236 1 1979 239 73 17 chr1 270379198 270379855 -11813809 + L1M4 LINE L1 3728 4421 -1725 1680 158 48 7 chr1 270380031 270380324 -11813340 - AluJb SINE Alu 0 312 3 326 279 76 52 chr1 270380711 270380883 -11812781 - L2 LINE L2 -558 2756 2581 464 276 8 0 chr1 270380986 270381109 -11812555 + AluSq/x SINE Alu 16 139 -174 24 67 0 0 chr1 270381719 270381764 -11811900 + AT_rich Low_complexity Low_complexity 1 45 0 2121 123 0 20 chr1 270381958 270382260 -11811404 + AluSx SINE Alu 1 296 -16 2284 96 0 0 chr1 270382260 270382553 -11811111 + AluSg SINE Alu 1 293 -17 22 35 0 0 chr1 270383111 270383140 -11810524 + AT_rich Low_complexity Low_complexity 1 29 0 1785 158 48 7 chr1 270383199 270383490 -11810174 - AluJb SINE Alu -9 303 1 521 98 0 12 chr1 270383517 270383599 -11810065 + (GGAA)n Simple_repeat Simple_repeat 3 83 0 2164 104 0 41 chr1 270383820 270383962 -11809702 + AluSx SINE Alu 4 150 -162 2438 61 0 10 chr1 270383962 270384258 -11809406 + AluY SINE Alu 1 293 -18 2164 104 0 41 chr1 270384258 270384432 -11809232 + AluSx SINE Alu 150 307 -5 198 0 0 0 chr1 270384557 270384579 -11809085 + (A)n Simple_repeat Simple_repeat 1 22 0 611 80 0 0 chr1 270384591 270384666 -11808998 + AluSx SINE Alu 13 87 -225 189 0 0 0 chr1 270384682 270384703 -11808961 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 1459 102 8 81 chr1 270384722 270384800 -11808864 + AluSx SINE Alu 71 153 -157 2271 127 0 0 chr1 270384800 270385099 -11808565 + AluSx SINE Alu 1 299 -13 1459 102 8 81 chr1 270385099 270385256 -11808408 + AluSx SINE Alu 153 289 -21 1972 155 16 0 chr1 270385599 270385903 -11807761 + AluSx SINE Alu 1 309 -3 686 210 49 0 chr1 270385960 270386103 -11807561 - MLT1E LTR MaLR -110 483 334 869 183 57 34 chr1 270386187 270386362 -11807302 - MLT1E LTR MaLR -408 185 7 1812 150 17 3 chr1 270386636 270386930 -11806734 + AluSx SINE Alu 1 298 -14 2321 105 0 0 chr1 270386930 270387225 -11806439 + AluSx SINE Alu 1 295 -17 1816 156 0 32 chr1 270387694 270388009 -11805655 + AluSx SINE Alu 1 305 -7 566 217 14 56 chr1 270388038 270388181 -11805483 + LTR45 LTR ERV1 389 525 0 325 167 0 24 chr1 270388241 270388325 -11805339 + L1MA3 LINE L1 5259 5340 -2702 1934 139 11 0 chr1 270388328 270388615 -11805049 + AluSx SINE Alu 1 290 -22 709 98 134 0 chr1 270388642 270388754 -11804910 + AluJo SINE Alu 1 127 -175 26 0 0 0 chr1 270388754 270388780 -11804884 + AT_rich Low_complexity Low_complexity 1 26 0 241 141 28 0 chr1 270388780 270388851 -11804813 + (TA)n Simple_repeat Simple_repeat 2 74 0 863 167 10 93 chr1 270388868 270389072 -11804592 + AluJo SINE Alu 117 303 -9 2292 99 13 0 chr1 270389081 270389385 -11804279 + AluSp SINE Alu 1 308 -5 2318 101 0 10 chr1 270390122 270390428 -11803236 + AluSq SINE Alu 1 303 -10 2168 126 12 29 chr1 270390782 270390803 -11802861 - Tigger3(Golem) DNA MER2_type -2693 336 316 2117 144 0 0 chr1 270390803 270391101 -11802563 + AluSx SINE Alu 2 299 -13 2168 126 12 29 chr1 270391101 270391421 -11802243 - Tigger3(Golem) DNA MER2_type -2713 316 1 711 177 159 26 chr1 270391447 270391673 -11801991 + MER20B DNA MER1_type 528 783 0 710 176 16 0 chr1 270391838 270391963 -11801701 - MER65C LTR ERV1 0 461 335 2300 98 0 0 chr1 270391980 270392276 -11801388 - AluSg SINE Alu -12 298 3 2219 100 20 0 chr1 270392278 270392577 -11801087 - AluSp SINE Alu -8 305 1 678 197 0 0 chr1 270392583 270392700 -11800964 - AluJ SINE Alu -13 299 183 778 163 0 0 chr1 270392701 270392830 -11800834 - AluJ SINE Alu -179 133 5 2098 135 6 18 chr1 270392841 270393167 -11800497 - MER65C LTR ERV1 -139 322 1 638 121 90 11 chr1 270393629 270393759 -11799905 + L1MA3 LINE L1 6157 6300 0 747 182 36 62 chr1 270394389 270394581 -11799083 + MER53 DNA DNA 3 189 0 2385 93 0 6 chr1 270395195 270395508 -11798156 + AluY SINE Alu 1 311 0 607 68 0 0 chr1 270395508 270395582 -11798082 + AluSg/x SINE Alu 126 199 -111 867 108 0 0 chr1 270395584 270395704 -11797960 + AluSg/x SINE Alu 170 289 -21 3428 64 7 2 chr1 270395708 270396148 -11797516 - MER41A LTR ERV1 -112 442 1 3759 97 37 6 chr1 270396148 270396664 -11797000 - MER41A-int LTR ERV1 0 5946 5415 1108 134 0 17 chr1 270396662 270396841 -11796823 - MER41A-int LTR ERV1 -927 5019 4844 * 541 136 0 58 chr1 270396829 270396932 -11796732 - MER41A-int LTR ERV1 -7659 97 1 * 1098 89 0 13 chr1 270396932 270397089 -11796575 - MER41A LTR ERV1 0 554 400 264 284 87 16 chr1 270397207 270397446 -11796218 + L2 LINE L2 1618 1927 -1387 1692 179 4 0 chr1 270397577 270397840 -11795824 - AluSx SINE Alu -45 267 4 588 145 0 0 chr1 270397841 270397924 -11795740 - AluS SINE Alu -228 84 2 2295 100 3 0 chr1 270398127 270398416 -11795248 - AluSp SINE Alu -23 290 1 1018 204 0 32 chr1 270398474 270398695 -11794969 + AluJo SINE Alu 88 301 -11 2280 111 0 3 chr1 270398698 270398996 -11794668 + AluSx SINE Alu 6 302 -10 254 29 29 0 chr1 270399102 270399137 -11794527 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2307 111 0 3 chr1 270399162 270399469 -11794195 - AluSx SINE Alu -6 306 1 302 296 9 9 chr1 270400333 270400441 -11793223 + MER5B DNA MER1_type 2 109 -69 225 65 0 0 chr1 270400447 270400478 -11793186 + (TATTG)n Simple_repeat Simple_repeat 2 32 0 632 154 103 8 chr1 270400478 270400595 -11793069 - FLAM_C SINE Alu -5 128 1 2299 126 0 3 chr1 270401199 270401509 -11792155 + AluSx SINE Alu 1 309 -3 1315 164 0 59 chr1 270401629 270401867 -11791797 + AluJb SINE Alu 87 310 -2 197 322 116 27 chr1 270402167 270402313 -11791351 + MIR SINE MIR 34 192 -70 1039 178 244 122 chr1 270402569 270403029 -11790635 + MER119 DNA MER1_type 67 582 -1 2290 101 0 16 chr1 270403077 270403395 -11790269 - AluSq SINE Alu 0 313 1 1315 169 0 13 chr1 270403397 270403622 -11790042 - L1MB3 LINE L1 -276 5907 5686 487 264 48 0 chr1 270403630 270403755 -11789909 - MIR SINE MIR -122 140 10 282 301 57 53 chr1 270403924 270404133 -11789531 + L1ME3A LINE L1 5731 5940 -230 2276 104 0 0 chr1 270404238 270404536 -11789128 + AluSx SINE Alu 1 298 -14 2260 93 7 0 chr1 270405119 270405409 -11788255 + AluSc SINE Alu 1 292 -17 2091 116 3 42 chr1 270405629 270405795 -11787869 - AluSx SINE Alu -13 299 149 2490 63 0 3 chr1 270405795 270406095 -11787569 - AluSc SINE Alu -10 299 1 2091 116 3 42 chr1 270406095 270406239 -11787425 - AluSx SINE Alu -163 149 1 1247 147 60 83 chr1 270406445 270406711 -11786953 + AluJo SINE Alu 5 264 -48 2344 100 3 3 chr1 270406740 270407039 -11786625 + AluSx SINE Alu 1 299 -13 2179 125 0 13 chr1 270407543 270407855 -11785809 + AluSx SINE Alu 1 308 -4 2390 79 3 0 chr1 270407861 270408151 -11785513 + AluSq SINE Alu 1 291 -22 2135 108 7 19 chr1 270409636 270409806 -11783858 - AluSx SINE Alu -9 303 137 2359 103 3 0 chr1 270409806 270410118 -11783546 - AluSp SINE Alu 0 313 1 2135 108 7 19 chr1 270410118 270410254 -11783410 - AluSx SINE Alu -175 137 1 804 264 98 73 chr1 270410410 270411236 -11782428 + L2 LINE L2 2256 3089 -224 2026 125 10 3 chr1 270411962 270412259 -11781405 - AluSx SINE Alu -13 299 1 3163 132 76 45 chr1 270412669 270413062 -11780602 + LTR9 LTR ERV1 1 381 -231 2207 103 10 0 chr1 270413062 270413352 -11780312 + AluSx SINE Alu 1 293 -19 2469 78 0 0 chr1 270413356 270413662 -11780002 + AluY SINE Alu 1 306 -5 3163 132 76 45 chr1 270413662 270413856 -11779808 + LTR9 LTR ERV1 383 611 -1 2162 101 4 0 chr1 270413945 270414254 -11779410 - AluSc SINE Alu 0 310 1 282 116 0 0 chr1 270414255 270414298 -11779366 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2177 122 0 0 chr1 270414299 270414602 -11779062 - AluSq SINE Alu -10 303 1 2336 109 0 0 chr1 270415036 270415330 -11778334 - AluSx SINE Alu -17 295 2 2335 110 3 0 chr1 270416673 270416974 -11776690 - AluSp SINE Alu -11 302 1 2218 122 3 0 chr1 270416982 270417285 -11776379 - AluSx SINE Alu -8 304 1 2305 115 0 0 chr1 270417293 270417597 -11776067 - AluSx SINE Alu -8 304 1 837 169 7 0 chr1 270417816 270417958 -11775706 + FRAM SINE Alu 5 147 -19 647 172 0 35 chr1 270418050 270418166 -11775498 + FLAM_C SINE Alu 2 113 -30 65 35 0 0 chr1 270418172 270418258 -11775406 + AT_rich Low_complexity Low_complexity 1 86 0 2004 142 0 3 chr1 270418547 270418835 -11774829 - AluSx SINE Alu -25 287 1 950 107 8 8 chr1 270418835 270418966 -11774698 - AluSq/x SINE Alu -179 134 4 27 62 0 0 chr1 270419016 270419064 -11774600 + AT_rich Low_complexity Low_complexity 1 48 0 1773 78 11 78 chr1 270419844 270420125 -11773539 - AluSg SINE Alu -4 306 45 25 0 0 0 chr1 270420270 270420295 -11773369 + AT_rich Low_complexity Low_complexity 1 25 0 2365 102 0 0 chr1 270420409 270420714 -11772950 - AluSq SINE Alu -8 305 1 1091 198 32 16 chr1 270420721 270420968 -11772696 - L1MD1 LINE L1 0 6242 5992 2222 68 7 34 chr1 270422150 270422467 -11771197 + AluSp SINE Alu 1 309 0 2026 125 6 41 chr1 270422843 270423163 -11770501 + AluJb SINE Alu 1 309 -3 2191 107 0 13 chr1 270423579 270423877 -11769787 + AluSg SINE Alu 1 294 -16 1191 95 0 24 chr1 270424523 270424692 -11768972 + AluY SINE Alu 1 165 -146 364 284 18 18 chr1 270424698 270424867 -11768797 + T-rich Low_complexity Low_complexity 2 170 0 1527 105 18 18 chr1 270425110 270425338 -11768326 + Tigger3(Golem) DNA MER2_type 2800 3027 -2 2137 108 0 10 chr1 270425569 270425865 -11767799 + AluSx SINE Alu 5 297 -15 1570 164 48 41 chr1 270426149 270426442 -11767222 + AluJo SINE Alu 6 300 -12 2425 92 3 0 chr1 270426713 270427019 -11766645 + AluSg SINE Alu 1 307 -3 207 0 0 0 chr1 270427225 270427248 -11766416 + (A)n Simple_repeat Simple_repeat 1 23 0 528 157 28 0 chr1 270427814 270427992 -11765672 + L1MB2 LINE L1 5836 6169 -2 272 162 0 59 chr1 270427995 270428063 -11765601 + L1MB4 LINE L1 6119 6183 0 2146 106 3 33 chr1 270428073 270428375 -11765289 + AluSp SINE Alu 3 295 -18 2287 97 0 0 chr1 270428375 270428675 -11764989 + AluY SINE Alu 1 300 -11 330 248 18 46 chr1 270428708 270428817 -11764847 + L1MEc LINE L1 1712 1817 -4579 2160 153 164 38 chr1 270429077 270429528 -11764136 - MER21A LTR ERV1 -9 922 415 1335 130 105 4 chr1 270429537 270429776 -11763888 - MER21A LTR ERV1 -668 263 1 1951 152 0 7 chr1 270429824 270430126 -11763538 + AluSx SINE Alu 6 305 -7 851 189 0 0 chr1 270430130 270430273 -11763391 + AluJo SINE Alu 1 143 -169 260 118 0 0 chr1 270430273 270430307 -11763357 - AluSc SINE Alu -98 201 168 701 189 71 0 chr1 270430409 270430536 -11763128 + AluSg/x SINE Alu 166 301 -11 359 193 74 22 chr1 270430559 270430694 -11762970 + L1MEc LINE L1 2149 2290 -4106 2197 133 0 0 chr1 270430710 270431018 -11762646 + AluSq SINE Alu 3 310 -3 6895 101 28 30 chr1 270431558 270431642 -11762022 + L1MA3 LINE L1 5103 5186 -1119 2386 55 0 39 chr1 270431642 270431953 -11761711 + AluY SINE Alu 2 300 -11 1681 92 0 5 chr1 270431953 270432202 -11761462 + AluSc SINE Alu 71 320 0 6895 101 28 30 chr1 270432202 270432796 -11760868 + L1MA3 LINE L1 5185 5778 -527 2594 61 3 0 chr1 270432796 270433106 -11760558 + AluY SINE Alu 1 311 0 6895 101 28 30 chr1 270433106 270433309 -11760355 + L1MA3 LINE L1 5778 5980 -325 2304 120 0 0 chr1 270433309 270433617 -11760047 + AluSx SINE Alu 1 308 -4 6895 101 28 30 chr1 270433617 270433936 -11759728 + L1MA3 LINE L1 5980 6304 -1 676 105 0 0 chr1 270433947 270434042 -11759622 + L1MC/D LINE L1 5618 5712 -632 1032 172 52 0 chr1 270434143 270434317 -11759347 + AluJo SINE Alu 106 288 -24 1670 167 36 20 chr1 270434321 270434627 -11759037 + AluJo SINE Alu 1 311 -1 2466 88 0 0 chr1 270434668 270434976 -11758688 + AluY SINE Alu 1 308 -3 2256 80 7 3 chr1 270435499 270435785 -11757879 - AluSg SINE Alu -23 287 1 892 133 91 24 chr1 270436018 270436183 -11757481 - AluJo SINE Alu -10 302 127 2398 97 0 0 chr1 270436331 270436641 -11757023 + AluSq SINE Alu 1 310 -3 1677 178 35 7 chr1 270436675 270436837 -11756827 - AluJo SINE Alu -18 294 119 284 48 24 0 chr1 270436837 270436879 -11756785 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1677 178 35 7 chr1 270436879 270437002 -11756662 - AluJo SINE Alu -193 119 1 272 261 116 42 chr1 270437018 270437135 -11756529 + L1MC4 LINE L1 7785 7892 -150 2202 138 0 0 chr1 270437135 270437446 -11756218 + AluSx SINE Alu 1 311 -1 272 261 116 42 chr1 270437446 270437543 -11756121 + L1MC4 LINE L1 7892 8015 -27 1963 112 46 11 chr1 270437549 270437834 -11755830 - AluSq SINE Alu -18 295 1 337 304 0 0 chr1 270437960 270438062 -11755602 + L1MC5 LINE L1 6633 6734 -1227 885 211 64 86 chr1 270438129 270438263 -11755401 - MLT1D LTR MaLR -185 320 185 2226 104 10 29 chr1 270438263 270438572 -11755092 - AluSq SINE Alu -10 303 1 885 211 64 86 chr1 270438572 270438764 -11754900 - MLT1D LTR MaLR -320 185 1 2009 142 10 10 chr1 270438891 270439200 -11754464 - AluSx SINE Alu -3 309 1 210 245 19 0 chr1 270439257 270439310 -11754354 - MIR SINE MIR -42 220 167 2069 107 7 18 chr1 270439411 270439691 -11753973 + AluSq SINE Alu 1 277 -36 180 0 0 0 chr1 270439696 270439716 -11753948 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 33 0 0 0 chr1 270439823 270439856 -11753808 + AT_rich Low_complexity Low_complexity 1 33 0 1272 256 22 53 chr1 270439926 270440340 -11753324 + LTR16A LTR ERVL 36 436 -14 2460 97 0 0 chr1 270440453 270440761 -11752903 + AluSq SINE Alu 1 308 -5 236 301 230 20 chr1 270440774 270440970 -11752694 + MIR SINE MIR 20 256 -6 192 182 0 68 chr1 270441080 270441124 -11752540 - MER5A DNA MER1_type 0 189 149 1151 60 40 0 chr1 270441124 270441275 -11752389 + MER41A LTR ERV1 398 554 0 44003 30 4 1 chr1 270441281 270447228 -11746436 + L1PA3 LINE L1 193 6155 0 21 36 0 0 chr1 270447234 270447262 -11746402 + AT_rich Low_complexity Low_complexity 1 28 0 499 90 0 0 chr1 270447262 270447329 -11746335 + PABL_A-int LTR ERV1 4384 4450 -565 2169 85 0 4 chr1 270447329 270447610 -11746054 - AluY SINE Alu -2 309 30 608 92 11 0 chr1 270447714 270447801 -11745863 + AluY SINE Alu 208 295 -16 2030 99 22 7 chr1 270447801 270448073 -11745591 - AluSx SINE Alu -30 282 7 1297 121 0 0 chr1 270448087 270448260 -11745404 - AluSg/x SINE Alu -6 306 134 2530 57 0 0 chr1 270448260 270448561 -11745103 - AluY SINE Alu -10 301 1 2357 79 0 3 chr1 270448694 270448985 -11744679 - AluSq SINE Alu -23 290 1 233 122 0 24 chr1 270448985 270449026 -11744638 + MER5B DNA MER1_type 115 154 -24 1258 102 0 6 chr1 270450299 270450466 -11743198 - AluSg/x SINE Alu -13 299 134 2284 83 3 7 chr1 270450466 270450756 -11742908 - AluSq SINE Alu -20 293 5 300 111 0 0 chr1 270451455 270451500 -11742164 + (CA)n Simple_repeat Simple_repeat 2 46 0 1756 143 10 20 chr1 270451501 270451794 -11741870 - AluJb SINE Alu -22 290 1 1635 167 7 27 chr1 270452699 270452993 -11740671 - AluJo SINE Alu -23 289 2 2036 127 0 24 chr1 270453636 270453950 -11739714 + AluJb SINE Alu 1 307 0 619 178 151 13 chr1 270454233 270454385 -11739279 - MER3 DNA MER1_type 0 209 37 2354 85 0 3 chr1 270454473 270454766 -11738898 - AluSx SINE Alu -20 292 1 1677 117 87 15 chr1 270454985 270455250 -11738414 - AluJb SINE Alu -14 298 15 373 191 56 0 chr1 270455818 270455907 -11737757 - MIR3 SINE MIR -9 199 106 2094 80 32 68 chr1 270456219 270456530 -11737134 + AluSg SINE Alu 1 300 -10 569 277 121 9 chr1 270458959 270459190 -11734474 - MIR SINE MIR 0 262 6 495 262 98 89 chr1 270459463 270459902 -11733762 + L1MEd LINE L1 393 835 -5284 2059 71 0 8 chr1 270460309 270460562 -11733102 - AluY SINE Alu -19 292 42 1408 136 30 30 chr1 270460779 270460837 -11732827 + MER46A DNA MER2_type 1 58 -2673 2046 114 0 29 chr1 270460837 270461143 -11732521 - AluJb SINE Alu -15 297 1 1408 136 30 30 chr1 270461143 270461320 -11732344 + MER46A DNA MER2_type 57 236 0 1871 133 35 3 chr1 270461750 270462036 -11731628 - AluSx SINE Alu -17 295 1 878 152 0 0 chr1 270462285 270462423 -11731241 - FLAM_C SINE Alu 0 143 6 2239 100 0 3 chr1 270462732 270463021 -11730643 - AluSq SINE Alu -17 296 9 23 0 0 0 chr1 270463405 270463428 -11730236 + AT_rich Low_complexity Low_complexity 1 23 0 1543 172 48 7 chr1 270463428 270463701 -11729963 - AluJo SINE Alu -28 284 1 494 141 0 0 chr1 270465317 270465388 -11728276 + AluJ/FLAM SINE Alu 2 72 -240 270 0 0 0 chr1 270465402 270465432 -11728232 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2116 112 14 10 chr1 270466190 270466486 -11727178 - AluSx SINE Alu -5 307 11 500 237 0 0 chr1 270466698 270466791 -11726873 + FLAM_A SINE Alu 5 97 -45 594 266 129 46 chr1 270467207 270467615 -11726049 + L1ME3A LINE L1 5507 5950 -220 1812 174 0 13 chr1 270467631 270467936 -11725728 + AluJo SINE Alu 1 301 -11 2440 90 3 0 chr1 270468081 270468382 -11725282 - AluSx SINE Alu -9 303 2 1914 123 3 91 chr1 270468392 270468734 -11724930 - AluSx SINE Alu 0 312 1 220 216 0 0 chr1 270468745 270468796 -11724868 + A-rich Low_complexity Low_complexity 1 51 0 1793 170 0 41 chr1 270468859 270469176 -11724488 - AluJo SINE Alu -8 304 1 328 194 71 20 chr1 270469582 270469680 -11723984 + MER5A DNA MER1_type 37 139 -50 * 401 212 71 0 chr1 270469596 270469681 -11723983 - MER5A DNA MER1_type -38 151 61 2459 88 0 3 chr1 270469797 270470105 -11723559 - AluSg SINE Alu -3 307 1 1817 166 58 0 chr1 270470113 270470439 -11723225 + MER47A DNA MER2_type 22 366 0 1946 166 88 100 chr1 270470599 270471080 -11722584 + L1M4 LINE L1 4072 4544 -1602 4394 61 44 10 chr1 270471080 270471667 -11721997 + L1PB1 LINE L1 5538 6144 -7 1946 166 88 100 chr1 270471667 270471852 -11721812 + L1M4 LINE L1 4544 4730 -1416 2266 102 13 7 chr1 270471852 270472156 -11721508 - AluSg SINE Alu -4 306 1 599 58 19 39 chr1 270472158 270472261 -11721403 - LTR23 LTR ERV1 -131 306 206 2218 120 0 0 chr1 270472261 270472562 -11721102 - AluSg SINE Alu -9 301 1 891 172 7 0 chr1 270472618 270472763 -11720901 - AluSg/x SINE Alu -26 283 138 2208 110 3 0 chr1 270472774 270473064 -11720600 - AluSc SINE Alu -18 291 1 1889 166 3 0 chr1 270473064 270473359 -11720305 - AluJb SINE Alu -16 296 1 181 266 92 46 chr1 270473639 270473748 -11719916 + L2 LINE L2 1775 1888 -1426 3270 158 75 42 chr1 270473768 270474463 -11719201 - LTR8A LTR ERV1 -9 718 1 2357 53 7 27 chr1 270475379 270475678 -11717986 - AluSx SINE Alu -19 293 1 283 288 55 41 chr1 270475865 270476025 -11717639 - L1M4 LINE L1 -3794 2352 2187 2041 125 3 29 chr1 270476025 270476338 -11717326 - AluSx SINE Alu -7 305 1 283 288 55 41 chr1 270476338 270476396 -11717268 - L1M4 LINE L1 -3959 2187 2131 782 269 201 44 chr1 270476398 270476699 -11716965 + L2 LINE L2 2434 2686 -627 2583 71 0 0 chr1 270476699 270477008 -11716656 + AluSc SINE Alu 1 309 0 2080 117 0 32 chr1 270477012 270477320 -11716344 + AluSq SINE Alu 1 298 -15 782 269 201 44 chr1 270477320 270477722 -11715942 + L2 LINE L2 2688 3245 -68 2356 97 0 0 chr1 270477722 270478022 -11715642 - AluSg1 SINE Alu -8 301 2 289 263 0 12 chr1 270478075 270478155 -11715509 + L2 LINE L2 3235 3313 0 2385 94 0 0 chr1 270478213 270478512 -11715152 - AluSg SINE Alu -11 299 1 2296 112 3 3 chr1 270478515 270478828 -11714836 - AluSp SINE Alu 0 313 1 2079 142 3 3 chr1 270478837 270479148 -11714516 - AluSx SINE Alu -1 311 1 2229 109 0 3 chr1 270479153 270479446 -11714218 - AluSq SINE Alu -21 292 1 1064 187 0 0 chr1 270479446 270479633 -11714031 - AluJo SINE Alu -4 308 122 1200 128 0 0 chr1 270479658 270479830 -11713834 - AluSx SINE Alu -140 172 1 772 196 0 0 chr1 270479972 270480105 -11713559 + FLAM_C SINE Alu 1 133 0 2652 58 0 0 chr1 270480115 270480426 -11713238 + AluY SINE Alu 1 311 0 630 170 28 0 chr1 270480525 270480631 -11713033 + FLAM_C SINE Alu 2 110 -33 1338 107 0 0 chr1 270480919 270481097 -11712567 - AluSg/x SINE Alu -15 297 120 2644 45 0 3 chr1 270481109 270481419 -11712245 - AluY SINE Alu 0 311 3 25 0 0 0 chr1 270481424 270481449 -11712215 + AT_rich Low_complexity Low_complexity 1 25 0 1842 129 68 0 chr1 270481449 270481728 -11711936 - AluSx SINE Alu -14 298 1 461 225 113 125 chr1 270481755 270481973 -11711691 + L3 LINE CR1 1035 1249 -328 2258 110 0 0 chr1 270481973 270482273 -11711391 - AluSx SINE Alu -12 300 1 461 225 113 125 chr1 270482273 270482383 -11711281 + L3 LINE CR1 1249 1359 -218 2620 68 0 0 chr1 270482383 270482692 -11710972 - AluY SINE Alu -2 309 1 2115 106 13 20 chr1 270483233 270483535 -11710129 + AluSx SINE Alu 1 300 -12 2073 84 46 7 chr1 270484167 270484452 -11709212 + AluSx SINE Alu 1 296 -16 2151 119 3 7 chr1 270484649 270484951 -11708713 - AluSc SINE Alu -8 301 1 2350 85 0 3 chr1 270485126 270485419 -11708245 - AluSg SINE Alu -14 296 5 1876 168 3 13 chr1 270485681 270485996 -11707668 - AluJb SINE Alu 0 312 1 2169 108 0 44 chr1 270486037 270486352 -11707312 + AluSx SINE Alu 1 301 -11 261 321 88 50 chr1 270486423 270486718 -11706946 + L2 LINE L2 1932 2243 -1071 2169 110 7 7 chr1 270486718 270487027 -11706637 + AluSx SINE Alu 1 309 -3 261 321 88 50 chr1 270487027 270487071 -11706593 + L2 LINE L2 2243 2284 -1030 1809 178 3 0 chr1 270487139 270487437 -11706227 + AluSx SINE Alu 1 299 -13 477 0 0 0 chr1 270487634 270487687 -11705977 + (TG)n Simple_repeat Simple_repeat 2 54 0 2087 107 21 0 chr1 270488271 270488552 -11705112 - AluSp SINE Alu -26 287 1 544 101 25 0 chr1 270488552 270488631 -11705033 - MER41-int LTR ERV1 -349 5597 5517 373 191 56 0 chr1 270488814 270488903 -11704761 - MIR3 SINE MIR -9 199 106 2094 80 32 68 chr1 270489215 270489526 -11704138 + AluSg SINE Alu 1 300 -10 569 277 121 9 chr1 270491955 270492186 -11701478 - MIR SINE MIR 0 262 6 495 262 98 89 chr1 270492459 270492898 -11700766 + L1MEd LINE L1 393 835 -5284 2059 71 0 8 chr1 270493305 270493558 -11700106 - AluY SINE Alu -19 292 42 1408 136 30 30 chr1 270493775 270493833 -11699831 + MER46A DNA MER2_type 1 58 -2673 2046 114 0 29 chr1 270493833 270494139 -11699525 - AluJb SINE Alu -15 297 1 1408 136 30 30 chr1 270494139 270494316 -11699348 + MER46A DNA MER2_type 57 236 0 1871 133 35 3 chr1 270494746 270495032 -11698632 - AluSx SINE Alu -17 295 1 878 152 0 0 chr1 270495281 270495419 -11698245 - FLAM_C SINE Alu 0 143 6 2239 100 0 3 chr1 270495728 270496017 -11697647 - AluSq SINE Alu -17 296 9 23 0 0 0 chr1 270496400 270496423 -11697241 + AT_rich Low_complexity Low_complexity 1 23 0 1543 172 48 7 chr1 270496423 270496696 -11696968 - AluJo SINE Alu -28 284 1 494 141 0 0 chr1 270498312 270498383 -11695281 + AluJ/FLAM SINE Alu 2 72 -240 270 0 0 0 chr1 270498397 270498427 -11695237 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2116 112 14 10 chr1 270499185 270499481 -11694183 - AluSx SINE Alu -5 307 11 500 237 0 0 chr1 270499693 270499786 -11693878 + FLAM_A SINE Alu 5 97 -45 594 266 129 46 chr1 270500202 270500610 -11693054 + L1ME3A LINE L1 5507 5950 -220 1812 174 0 13 chr1 270500626 270500931 -11692733 + AluJo SINE Alu 1 301 -11 2440 90 3 0 chr1 270501076 270501377 -11692287 - AluSx SINE Alu -9 303 2 1914 123 3 91 chr1 270501387 270501729 -11691935 - AluSx SINE Alu 0 312 1 220 216 0 0 chr1 270501740 270501791 -11691873 + A-rich Low_complexity Low_complexity 1 51 0 1793 170 0 41 chr1 270501854 270502171 -11691493 - AluJo SINE Alu -8 304 1 328 194 71 20 chr1 270502577 270502675 -11690989 + MER5A DNA MER1_type 37 139 -50 * 401 212 71 0 chr1 270502591 270502676 -11690988 - MER5A DNA MER1_type -38 151 61 2459 88 0 3 chr1 270502792 270503100 -11690564 - AluSg SINE Alu -3 307 1 1817 166 58 0 chr1 270503108 270503434 -11690230 + MER47A DNA MER2_type 22 366 0 3866 170 154 67 chr1 270503594 270504075 -11689589 + L1MB7 LINE L1 4072 4510 -1636 4394 61 44 10 chr1 270504075 270504662 -11689002 + L1PB1 LINE L1 5538 6144 -7 3866 170 154 67 chr1 270504662 270504847 -11688817 + L1MB7 LINE L1 4510 4678 -1468 2331 86 13 7 chr1 270504847 270505151 -11688513 - AluSg SINE Alu -4 306 1 3866 170 154 67 chr1 270505151 270505680 -11687984 + L1MB7 LINE L1 4678 5372 -774 403 168 10 10 chr1 270505688 270505789 -11687875 + CT-rich Low_complexity Low_complexity 3 103 0 1381 180 0 4 chr1 270505841 270506069 -11687595 + AluJb SINE Alu 86 312 0 3346 185 78 14 chr1 270506070 270506810 -11686854 + L1MB7 LINE L1 5356 6143 -41 198 128 0 0 chr1 270507491 270507530 -11686134 + (T)n Simple_repeat Simple_repeat 1 39 0 966 77 0 0 chr1 270507536 270507653 -11686011 - AluSq/x SINE Alu -195 117 1 1635 169 40 7 chr1 270507667 270507939 -11685725 - AluJo SINE Alu -31 281 1 2055 126 0 3 chr1 270508351 270508664 -11685000 + AluY SINE Alu 1 312 0 2235 98 17 0 chr1 270508768 270509064 -11684600 - AluSq SINE Alu -12 301 1 2304 104 0 0 chr1 270509075 270509364 -11684300 - AluSq SINE Alu -24 289 1 2504 67 0 0 chr1 270509735 270510035 -11683629 - AluSc SINE Alu -9 300 1 275 282 160 38 chr1 270510363 270510494 -11683170 + L2 LINE L2 3124 3270 -2 2089 133 0 28 chr1 270510829 270511146 -11682518 - AluSx SINE Alu -4 308 1 2014 153 0 3 chr1 270511175 270511483 -11682181 - AluSx SINE Alu -5 307 1 1719 153 58 3 chr1 270511594 270511888 -11681776 + AluJb SINE Alu 1 310 -2 723 284 88 45 chr1 270512365 270512851 -11680813 - L1ME4a LINE L1 -95 6026 5520 2089 127 0 10 chr1 270512948 270513247 -11680417 - AluSx SINE Alu -16 296 1 21 0 0 0 chr1 270513249 270513270 -11680394 + AT_rich Low_complexity Low_complexity 1 21 0 453 298 104 27 chr1 270513659 270513958 -11679706 + L2 LINE L2 2990 3311 -2 2309 94 0 19 chr1 270514182 270514489 -11679175 - AluSg SINE Alu -1 309 9 26 0 0 0 chr1 270514514 270514540 -11679124 + AT_rich Low_complexity Low_complexity 1 26 0 383 305 103 11 chr1 270514822 270514996 -11678668 - L2 LINE L2 -970 2344 2155 2192 109 0 3 chr1 270515822 270516105 -11677559 + AluSq SINE Alu 1 282 -31 309 26 0 0 chr1 270516235 270516273 -11677391 + (TA)n Simple_repeat Simple_repeat 2 39 0 2337 84 3 26 chr1 270516273 270516581 -11677083 - AluSc SINE Alu -8 301 1 417 168 56 56 chr1 270516984 270517109 -11676555 - L1ME4a LINE L1 0 6121 5997 684 141 22 37 chr1 270517138 270517273 -11676391 - AluJb SINE Alu -178 134 2 23 54 0 0 chr1 270517280 270517317 -11676347 + AT_rich Low_complexity Low_complexity 1 37 0 2147 98 0 14 chr1 270517410 270517720 -11675944 + AluY SINE Alu 1 306 0 1633 165 26 23 chr1 270517722 270517852 -11675812 + AluJo SINE Alu 1 129 -183 2194 130 3 3 chr1 270517852 270518159 -11675505 + AluSx SINE Alu 1 307 -5 1633 165 26 23 chr1 270518159 270518337 -11675327 + AluJo SINE Alu 129 310 -2 658 256 118 0 chr1 270518474 270518685 -11674979 - L1MC4 LINE L1 0 8042 7807 959 170 32 46 chr1 270518849 270519067 -11674597 - MER20 DNA MER1_type -4 215 1 430 250 37 37 chr1 270519112 270519276 -11674388 - MIR SINE MIR -1 261 98 2092 108 14 0 chr1 270519348 270519635 -11674029 - AluSg SINE Alu -19 291 1 582 265 188 41 chr1 270519722 270520084 -11673580 + L1ME4a LINE L1 5502 5916 -205 258 233 33 17 chr1 270520254 270520314 -11673350 - MER66A LTR ERV1 -141 337 277 2013 131 17 10 chr1 270521965 270522262 -11671402 + AluSx SINE Alu 4 302 -10 291 287 0 35 chr1 270522404 270522519 -11671145 + CT-rich Low_complexity Low_complexity 2 112 0 218 281 102 94 chr1 270522710 270522966 -11670698 - L2 LINE L2 -188 3084 2827 1975 129 31 0 chr1 270522983 270523270 -11670394 + AluSq SINE Alu 1 296 -17 393 138 0 0 chr1 270523309 270523367 -11670297 + AluSp/q SINE Alu 191 248 -55 2062 78 50 28 chr1 270523504 270523786 -11669878 + AluY SINE Alu 1 288 -23 1065 258 139 41 chr1 270524178 270524930 -11668734 - L2 LINE L2 0 3313 2487 1794 135 53 18 chr1 270524989 270525147 -11668517 - AluSx SINE Alu -21 291 117 2412 94 3 0 chr1 270525147 270525456 -11668208 - AluSg SINE Alu 0 310 1 1794 135 53 18 chr1 270525456 270525578 -11668086 - AluSx SINE Alu -195 117 1 278 0 0 0 chr1 270525741 270525774 -11667890 - L1MB7 LINE L1 -21 6163 6131 515 154 0 11 chr1 270525774 270525865 -11667799 - AluJb SINE Alu -12 300 211 1838 161 7 0 chr1 270526285 270526589 -11667075 - AluSx SINE Alu -6 306 1 712 89 0 0 chr1 270526917 270527007 -11666657 - AluJ/FLAM SINE Alu -221 91 2 677 225 43 5 chr1 270527008 270527195 -11666469 + L1ME1 LINE L1 5700 5893 -273 2322 104 0 0 chr1 270527196 270527495 -11666169 + AluSx SINE Alu 1 299 -13 2314 153 16 59 chr1 270527588 270527626 -11666038 - MSTB LTR MaLR -1 425 387 2285 116 0 0 chr1 270527626 270527936 -11665728 + AluSx SINE Alu 1 310 -2 2314 153 16 59 chr1 270527936 270528341 -11665323 - MSTB LTR MaLR -39 387 1 2210 106 14 0 chr1 270528493 270528785 -11664879 - AluSx SINE Alu -16 296 1 1807 146 20 3 chr1 270528785 270529079 -11664585 - AluSx SINE Alu -13 299 1 884 177 57 34 chr1 270529353 270529528 -11664136 + MLT1E LTR MaLR 7 185 -408 686 210 49 0 chr1 270529612 270529755 -11663909 + MLT1E LTR MaLR 334 483 -110 1972 155 16 0 chr1 270529812 270530116 -11663548 - AluSx SINE Alu -3 309 1 1459 102 8 81 chr1 270530459 270530616 -11663048 - AluSg/x SINE Alu -21 289 153 2271 127 0 0 chr1 270530616 270530915 -11662749 - AluSx SINE Alu -13 299 1 1459 102 8 81 chr1 270530915 270530993 -11662671 - AluSg/x SINE Alu -157 153 71 189 0 0 0 chr1 270531012 270531033 -11662631 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 929 222 9 14 chr1 270531051 270531136 -11662528 - AluJo SINE Alu -92 220 136 1692 188 7 10 chr1 270531136 270531444 -11662220 - AluJo SINE Alu -5 307 1 929 222 9 14 chr1 270531444 270531574 -11662090 - AluJo SINE Alu -176 136 6 2293 93 3 3 chr1 270531607 270531907 -11661757 + AluSp SINE Alu 3 302 -11 864 296 153 9 chr1 270531908 270532456 -11661208 + L2 LINE L2 2108 2734 -580 2443 91 7 3 chr1 270532488 270532796 -11660868 - AluSg SINE Alu -1 309 1 1969 116 3 67 chr1 270532806 270533134 -11660530 - AluSp SINE Alu -6 307 1 2426 84 0 22 chr1 270533198 270533518 -11660146 + AluSq SINE Alu 1 313 0 327 358 60 0 chr1 270533604 270533755 -11659909 + L2 LINE L2 2921 3080 -233 270 249 136 35 chr1 270533775 270533944 -11659720 - L1MC4a LINE L1 -1590 6218 6033 2323 98 0 0 chr1 270533964 270534260 -11659404 - AluSg SINE Alu -14 296 1 258 105 0 0 chr1 270534262 270534300 -11659364 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 2291 103 0 3 chr1 270534302 270534613 -11659051 - AluSg SINE Alu 0 310 1 2177 110 3 0 chr1 270534713 270535021 -11658643 - AluSp SINE Alu 0 309 1 1834 123 0 0 chr1 270535982 270536233 -11657431 - AluSx SINE Alu -9 303 53 826 157 0 41 chr1 270536253 270536400 -11657264 - AluJb SINE Alu -171 141 1 313 81 32 0 chr1 270536991 270537053 -11656611 + (TTTAA)n Simple_repeat Simple_repeat 2 65 0 2503 70 0 0 chr1 270537054 270537354 -11656310 - AluY SINE Alu -11 300 1 2287 90 7 3 chr1 270537357 270537656 -11656008 - AluSp SINE Alu -13 300 1 1818 84 0 0 chr1 270537657 270537884 -11655780 - AluSx SINE Alu -4 306 80 2914 3 0 0 chr1 270537884 270538190 -11655474 - AluYa5 SINE Alu -3 308 2 636 117 0 0 chr1 270538192 270538286 -11655378 - AluSx SINE Alu -219 94 1 2242 97 3 0 chr1 270538315 270538604 -11655060 - AluSg SINE Alu -20 290 1 1951 101 28 11 chr1 270539003 270539289 -11654375 + AluSx SINE Alu 7 297 -15 2173 114 7 3 chr1 270539479 270539776 -11653888 + AluSx SINE Alu 1 298 -14 1786 91 68 4 chr1 270540369 270540621 -11653043 - AluSg SINE Alu -14 296 29 2105 85 64 3 chr1 270540727 270541010 -11652654 - AluY SINE Alu -11 300 1 2097 127 3 7 chr1 270541091 270541390 -11652274 - AluSq SINE Alu -14 299 2 2290 105 0 0 chr1 270541796 270542100 -11651564 + AluSx SINE Alu 3 306 -6 248 360 59 25 chr1 270542192 270542431 -11651233 - L2 LINE L2 -2129 1185 939 2317 92 0 35 chr1 270542561 270542875 -11650789 + AluSq SINE Alu 1 303 -10 2508 42 14 0 chr1 270543971 270544257 -11649407 - AluY SINE Alu -21 290 1 1875 149 11 0 chr1 270546202 270546484 -11647180 - AluJb SINE Alu -27 285 1 2821 10 0 0 chr1 270546773 270547074 -11646590 - AluY SINE Alu -4 307 7 1600 131 112 4 chr1 270547081 270547341 -11646323 - AluJo SINE Alu -20 292 5 1227 111 0 6 chr1 270547384 270547555 -11646109 - AluSg/x SINE Alu -12 298 129 2198 104 0 0 chr1 270547755 270548033 -11645631 - AluSq SINE Alu -10 303 26 1938 134 0 31 chr1 270548036 270548217 -11645447 - AluSx SINE Alu 0 309 140 2206 110 7 3 chr1 270548217 270548518 -11645146 - AluSq SINE Alu -11 302 1 1938 134 0 31 chr1 270548518 270548654 -11645010 - AluSx SINE Alu -169 140 1 1561 128 71 50 chr1 270548665 270548946 -11644718 - AluJb SINE Alu -25 287 1 1777 169 3 7 chr1 270549142 270549437 -11644227 - AluJb SINE Alu -18 294 1 24 0 0 0 chr1 270549661 270549685 -11643979 + AT_rich Low_complexity Low_complexity 1 24 0 1287 137 61 0 chr1 270549707 270549904 -11643760 - AluSg/x SINE Alu -18 294 86 1150 155 0 0 chr1 270550869 270551037 -11642627 + FAM SINE Alu 1 168 -7 2293 105 0 0 chr1 270551467 270551761 -11641903 + AluSc SINE Alu 1 294 -15 683 168 26 0 chr1 270551869 270551982 -11641682 + FLAM_C SINE Alu 2 117 -26 1287 137 61 0 chr1 270552988 270553185 -11640479 + AluSg/x SINE Alu 86 294 -18 24 0 0 0 chr1 270553207 270553231 -11640433 + AT_rich Low_complexity Low_complexity 1 24 0 1014 109 0 7 chr1 270553455 270553592 -11640072 + AluJo SINE Alu 1 136 -176 1534 125 65 4 chr1 270553592 270553824 -11639840 + AluSg SINE Alu 46 291 -19 1569 125 125 11 chr1 270553840 270554121 -11639543 + L1MB8 LINE L1 5851 6163 -15 2251 97 7 7 chr1 270554985 270555284 -11638380 - AluSq SINE Alu -14 299 1 1697 67 5 5 chr1 270555477 270555687 -11637977 - AluSg/x SINE Alu -7 303 94 2427 178 26 4 chr1 270556025 270556492 -11637172 + L1PB4 LINE L1 5678 6154 -2 2445 52 0 3 chr1 270558075 270558365 -11635299 - AluY SINE Alu -22 289 1 395 337 6 28 chr1 270558925 270559103 -11634561 + L2 LINE L2 2896 3069 -203 564 228 98 85 chr1 270561215 270561355 -11632309 + MIR SINE MIR 7 153 -109 2093 144 3 0 chr1 270561355 270561661 -11632003 + AluSx SINE Alu 1 307 -5 564 228 98 85 chr1 270561661 270561744 -11631920 + MIR SINE MIR 153 233 -29 2364 87 0 7 chr1 270562097 270562416 -11631248 + AluSg SINE Alu 1 310 0 22 0 0 0 chr1 270562590 270562612 -11631052 + AT_rich Low_complexity Low_complexity 1 22 0 2303 105 10 16 chr1 270563582 270563896 -11629768 - AluSx SINE Alu 0 312 1 614 234 38 25 chr1 270564597 270564755 -11628909 + MIR3 SINE MIR 43 202 -6 2546 78 0 3 chr1 270565397 270565704 -11627960 + AluSq SINE Alu 1 306 -7 310 239 14 0 chr1 270566233 270566304 -11627360 - MIR SINE MIR -11 251 180 1397 137 28 5 chr1 270566320 270566532 -11627132 + AluJo SINE Alu 85 301 -11 927 117 43 0 chr1 270566542 270566705 -11626959 - L1MA8 LINE L1 -2 6289 6120 2088 123 3 0 chr1 270566705 270566989 -11626675 - AluSx SINE Alu -14 298 14 333 185 109 92 chr1 270567023 270567112 -11626552 - MIR SINE MIR -99 163 70 2370 87 0 3 chr1 270567112 270567411 -11626253 + AluSc SINE Alu 1 298 -11 333 185 109 92 chr1 270567411 270567440 -11626224 - MIR SINE MIR -192 70 43 3667 131 6 6 chr1 270567449 270567975 -11625689 - MER1A DNA MER1_type 0 527 2 1640 180 130 14 chr1 270571031 270571386 -11622278 + MSTD LTR MaLR 1 396 0 3307 211 18 76 chr1 270571675 270571838 -11621826 - L1MC/D LINE L1 -743 5403 5232 2514 47 3 0 chr1 270571838 270572134 -11621530 - AluY SINE Alu -14 297 1 3307 211 18 76 chr1 270572134 270572246 -11621418 - L1MC/D LINE L1 -914 5232 5115 1834 124 69 0 chr1 270572246 270572520 -11621144 - AluSx SINE Alu -19 293 1 3307 211 18 76 chr1 270572520 270573194 -11620470 - L1MC/D LINE L1 -1031 5115 4641 2268 108 16 10 chr1 270573194 270573499 -11620165 + AluSx SINE Alu 5 311 -1 3307 211 18 76 chr1 270573499 270573697 -11619967 - L1MC/D LINE L1 -1505 4641 4433 2125 103 65 0 chr1 270573967 270574257 -11619407 + AluSx SINE Alu 1 309 -3 461 239 23 135 chr1 270574658 270574833 -11618831 + LTR67 LTR ERVL 326 464 -93 2532 159 2 25 chr1 270574833 270575267 -11618397 + L1PA16 LINE L1 5734 6157 -9 461 239 23 135 chr1 270575267 270575350 -11618314 + LTR67 LTR ERVL 464 555 -2 322 279 71 77 chr1 270575441 270575512 -11618152 - HAL1b LINE L1 -547 801 731 2262 92 3 3 chr1 270575512 270575807 -11617857 - AluSc SINE Alu -14 295 1 322 279 71 77 chr1 270575807 270575918 -11617746 - HAL1b LINE L1 -617 731 620 2201 97 6 28 chr1 270576045 270576364 -11617300 + AluSx SINE Alu 1 312 0 469 211 35 44 chr1 270576454 270576568 -11617096 + AluJo SINE Alu 47 159 -153 2807 108 182 0 chr1 270577033 270577479 -11616185 + MER1A DNA MER1_type 1 527 0 1513 167 67 53 chr1 270577757 270578057 -11615607 - AluJo SINE Alu -7 305 2 186 224 0 0 chr1 270578082 270578131 -11615533 + (TA)n Simple_repeat Simple_repeat 2 50 0 2801 165 31 2 chr1 270578136 270578646 -11615018 - L1MB3 LINE L1 -15 6168 5644 2007 143 67 25 chr1 270578706 270579064 -11614600 + MER83C LTR ERV1 1 373 0 228 135 0 0 chr1 270579603 270579640 -11614024 + (T)n Simple_repeat Simple_repeat 1 37 0 2105 149 0 0 chr1 270579646 270579954 -11613710 - AluSx SINE Alu -4 308 1 355 255 31 10 chr1 270579954 270580045 -11613619 + MIR SINE MIR 112 207 -55 880 154 4 2 chr1 270580056 270580303 -11613361 + AluJ SINE Alu 2 300 -12 553 113 0 0 chr1 270580355 270580435 -11613229 - AluSq SINE Alu -9 304 225 1693 80 9 0 chr1 270580482 270580695 -11612969 - AluSq SINE Alu -98 215 1 295 303 72 23 chr1 270580822 270581043 -11612621 - HAL1b LINE L1 -1033 315 84 2203 96 6 26 chr1 270581221 270581533 -11612131 - AluSx SINE Alu -6 306 1 741 193 90 0 chr1 270581541 270581686 -11611978 - AluJ SINE Alu -23 289 132 818 164 8 15 chr1 270582481 270582615 -11611049 - AluJ SINE Alu -169 133 1 663 268 86 88 chr1 270582636 270582769 -11610895 + L1ME4a LINE L1 5312 5444 -677 722 261 82 25 chr1 270582769 270583014 -11610650 + MIR SINE MIR 4 262 0 663 268 86 88 chr1 270583014 270583157 -11610507 + L1ME4a LINE L1 5444 5586 -535 1892 126 5 116 chr1 270583157 270583344 -11610320 - MER7A DNA MER2_type -2692 346 140 186 43 0 0 chr1 270583344 270583367 -11610297 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1886 114 15 8 chr1 270583367 270583629 -11610035 - AluJo SINE Alu -26 286 23 1892 126 5 116 chr1 270583629 270583739 -11609925 - MER7A DNA MER2_type -2897 141 20 2134 91 44 0 chr1 270583739 270584013 -11609651 - AluSx SINE Alu -22 290 5 2214 122 7 0 chr1 270584013 270584316 -11609348 - AluSx SINE Alu -7 305 1 1892 126 5 116 chr1 270584316 270584404 -11609260 - MER7A DNA MER2_type -3016 22 3 663 268 86 88 chr1 270584404 270584532 -11609132 + L1ME4a LINE L1 5586 5713 -408 3871 47 6 2 chr1 270584532 270585003 -11608661 + L1PA5 LINE L1 5681 6153 -1 2477 82 0 0 chr1 270585013 270585317 -11608347 + AluY SINE Alu 1 304 -7 663 268 86 88 chr1 270585317 270585537 -11608127 + L1ME4a LINE L1 5722 5948 -173 2010 129 0 0 chr1 270585631 270585910 -11607754 + AluSx SINE Alu 26 304 -8 2149 141 0 0 chr1 270586341 270586640 -11607024 - AluSx SINE Alu -13 299 1 373 175 12 25 chr1 270586693 270586772 -11606892 + Tigger5 DNA MER2_type 1 78 -2245 449 129 0 0 chr1 270586772 270586842 -11606822 - Tigger5 DNA MER2_type -3 2320 2251 304 233 0 0 chr1 270586841 270586901 -11606763 + Tigger5 DNA MER2_type 2264 2323 0 * 2231 86 7 20 chr1 270587576 270587877 -11605787 - AluSc SINE Alu -12 297 1 2192 117 3 0 chr1 270588955 270589253 -11604411 - AluSg SINE Alu -11 299 1 243 167 111 19 chr1 270589644 270589698 -11603966 + L1MB3 LINE L1 5428 5486 -685 * 4857 148 19 6 chr1 270589686 270590330 -11603334 + L1MA8 LINE L1 5384 6043 -248 2336 104 3 0 chr1 270590330 270590629 -11603035 + AluSx SINE Alu 1 300 -12 4857 148 19 6 chr1 270590629 270590850 -11602814 + L1MA8 LINE L1 6043 6260 -31 244 119 0 24 chr1 270590850 270590892 -11602772 + MSTA LTR MaLR 124 164 -264 3684 174 19 32 chr1 270591130 270591259 -11602405 + L1MB3 LINE L1 5476 5605 -578 2264 119 7 7 chr1 270591259 270591569 -11602095 + AluSx SINE Alu 1 310 -2 3684 174 19 32 chr1 270591569 270592156 -11601508 + L1MB3 LINE L1 5605 6183 0 2250 127 0 6 chr1 270592448 270592762 -11600902 - AluSx SINE Alu 0 312 1 2454 124 34 55 chr1 270592797 270592990 -11600674 + MSTA LTR MaLR 1 196 -232 2063 55 55 0 chr1 270592990 270593244 -11600420 + AluY SINE Alu 33 300 -11 2454 124 34 55 chr1 270593244 270593487 -11600177 + MSTA LTR MaLR 196 428 0 228 143 0 0 chr1 270595821 270595863 -11597801 + (CCA)n Simple_repeat Simple_repeat 1 42 0 332 276 46 86 chr1 270596564 270596738 -11596926 - L1MC4a LINE L1 -1586 6222 6056 282 116 0 0 chr1 270596809 270596852 -11596812 + (TCCC)n Simple_repeat Simple_repeat 3 45 0 248 135 0 19 chr1 270596893 270596945 -11596719 + (TTTCC)n Simple_repeat Simple_repeat 1 51 0 1216 165 82 0 chr1 270596946 270597152 -11596512 - AluJo SINE Alu -7 305 83 619 234 35 70 chr1 270597152 270597409 -11596255 - L1MC4a LINE L1 -1821 5987 5740 320 247 82 0 chr1 270597431 270597516 -11596148 - L1MC4a LINE L1 -2144 5664 5573 224 360 7 0 chr1 270597979 270598129 -11595535 + (TG)n Simple_repeat Simple_repeat 2 152 0 2309 159 39 10 chr1 270598201 270598615 -11595049 + MSTB LTR MaLR 1 426 0 246 215 21 4 chr1 270598812 270599056 -11594608 + (TG)n Simple_repeat Simple_repeat 1 248 0 444 236 29 6 chr1 270599083 270599257 -11594407 + (TG)n Simple_repeat Simple_repeat 2 179 0 436 266 11 6 chr1 270599244 270599421 -11594243 + G-rich Low_complexity Low_complexity 1 178 0 * 2659 143 123 39 chr1 270599940 270600501 -11593163 + LTR18B LTR ERVL 1 608 -6 333 289 257 0 chr1 270600549 270600853 -11592811 + MLT1L LTR MaLR 224 605 -10 2267 113 7 0 chr1 270601080 270601373 -11592291 + AluSx SINE Alu 1 295 -17 181 303 30 0 chr1 270601648 270601714 -11591950 - MER5B DNA MER1_type -110 68 1 488 201 201 0 chr1 270601813 270601963 -11591701 - MER5A DNA MER1_type -1 188 4 305 321 46 30 chr1 270601970 270602101 -11591563 - MIR3 SINE MIR -8 200 68 4676 144 23 24 chr1 270602771 270603131 -11590533 + LTR39 LTR ERV1 1 360 -423 2230 116 0 13 chr1 270603131 270603433 -11590231 + AluSx SINE Alu 1 298 -14 4676 144 23 24 chr1 270603433 270603856 -11589808 + LTR39 LTR ERV1 360 783 0 2175 124 3 3 chr1 270603856 270604154 -11589510 - AluSx SINE Alu -14 298 1 4495 140 30 69 chr1 270604425 270605280 -11588384 - LTR12 LTR ERV1 0 826 5 1458 169 27 26 chr1 270605293 270605853 -11587811 - pTR5 LTR ERV1 -1092 1346 743 2551 71 0 0 chr1 270606799 270607110 -11586554 + AluY SINE Alu 1 311 0 414 0 0 0 chr1 270607120 270607166 -11586498 + (CA)n Simple_repeat Simple_repeat 2 47 0 1808 122 86 0 chr1 270607168 270607447 -11586217 + AluSp SINE Alu 1 303 -10 226 245 49 20 chr1 270607452 270607554 -11586110 - L1ME4a LINE L1 -33 6088 5984 2397 100 0 0 chr1 270608067 270608377 -11585287 - AluSx SINE Alu -2 310 1 1975 219 83 8 chr1 270609056 270609585 -11584079 + L1ME3A LINE L1 5597 6165 -5 4242 75 9 14 chr1 270610500 270611057 -11582607 + MER41A LTR ERV1 1 554 0 2086 134 3 10 chr1 270611155 270611468 -11582196 - AluJo SINE Alu -1 311 1 413 286 51 45 chr1 270611819 270612113 -11581551 + L2 LINE L2 2790 3089 -183 2871 137 115 77 chr1 270612242 270612561 -11581103 + MER4A LTR ERV1 1 306 -358 1878 124 68 22 chr1 270612561 270612883 -11580781 - MER1B DNA MER1_type 0 337 1 2871 137 115 77 chr1 270612883 270613199 -11580465 + MER4A LTR ERV1 306 660 -4 232 338 15 0 chr1 270613213 270613281 -11580383 + L2 LINE L2 3204 3272 0 285 232 73 151 chr1 270613384 270613441 -11580223 - MIR SINE MIR -6 256 196 2258 99 13 0 chr1 270613441 270613745 -11579919 - AluSx SINE Alu -4 308 1 285 232 73 151 chr1 270613745 270613841 -11579823 - MIR SINE MIR -66 196 125 1707 192 0 0 chr1 270613841 270614153 -11579511 + AluJo SINE Alu 1 312 0 285 232 73 151 chr1 270614153 270614234 -11579430 - MIR SINE MIR -137 125 39 2273 69 3 16 chr1 270614293 270614596 -11579068 + AluSp SINE Alu 7 305 -8 1803 96 4 4 chr1 270614647 270614896 -11578768 + AluSx SINE Alu 1 249 -63 427 86 0 0 chr1 270619908 270619966 -11573698 + AluSx SINE Alu 243 300 -10 356 61 0 0 chr1 270619995 270620044 -11573620 - Alu SINE Alu -7 295 247 1851 154 13 0 chr1 270620565 270620870 -11572794 - AluJo SINE Alu -3 309 1 2136 116 0 0 chr1 270620998 270621300 -11572364 + AluSx SINE Alu 1 302 -10 629 230 150 24 chr1 270621401 270621614 -11572050 + MIR SINE MIR 10 249 -13 1941 104 36 0 chr1 270621995 270622273 -11571391 + AluSg SINE Alu 5 292 -18 344 233 81 0 chr1 270623017 270623103 -11570561 - MIR SINE MIR -50 212 120 2121 100 13 10 chr1 270623295 270623605 -11570059 + AluSx SINE Alu 1 311 -1 1660 158 9 53 chr1 270625042 270625364 -11568300 + AluJb SINE Alu 1 308 -4 1834 142 0 22 chr1 270625364 270625675 -11567989 + AluSq SINE Alu 1 304 -9 306 318 24 0 chr1 270625675 270625760 -11567904 + L2 LINE L2 2691 2777 -537 185 250 300 14 chr1 270625797 270625937 -11567727 + L2 LINE L2 2857 3036 -236 551 129 35 0 chr1 270626188 270626273 -11567391 + FLAM_A SINE Alu 34 121 -21 2069 118 16 0 chr1 270626302 270626608 -11567056 - AluSx SINE Alu -1 311 1 1524 163 0 45 chr1 270627148 270627437 -11566227 + AluJb SINE Alu 1 276 -36 737 152 64 0 chr1 270627461 270627586 -11566078 + FLAM_A SINE Alu 1 133 0 210 268 0 12 chr1 270677795 270677877 -11515787 + G-rich Low_complexity Low_complexity 3 83 0 918 179 22 11 chr1 270679091 270679275 -11514389 + MER5A DNA MER1_type 2 187 -2 1990 89 0 25 chr1 270679328 270679609 -11514055 - AluSc SINE Alu 0 309 36 433 231 20 20 chr1 270679611 270679748 -11513916 - L1MEc LINE L1 -3752 2463 2324 2246 108 0 0 chr1 270679748 270680053 -11513611 - AluSq SINE Alu -8 305 1 695 84 0 0 chr1 270680239 270680322 -11513342 + AluSc SINE Alu 36 118 -191 1956 244 134 41 chr1 270680322 270680994 -11512670 - L1MEc LINE L1 -4109 2287 1492 2476 80 0 6 chr1 270680994 270681306 -11512358 + AluSq SINE Alu 1 310 -3 1956 244 134 41 chr1 270681306 270681618 -11512046 - L1MEc LINE L1 -4904 1492 1211 310 122 0 0 chr1 270681619 270681660 -11512004 - AluSc SINE Alu -146 153 113 279 374 32 15 chr1 270681663 270682003 -11511661 - L1MEc LINE L1 -5638 758 413 315 261 176 25 chr1 270682246 270682365 -11511299 + MARNA DNA Mariner 125 261 -325 592 324 57 15 chr1 270682434 270682767 -11510897 - L1MEc LINE L1 -6030 366 20 354 23 0 0 chr1 270682904 270682947 -11510717 + (TA)n Simple_repeat Simple_repeat 1 43 0 2447 84 0 0 chr1 270682948 270683246 -11510418 - AluSp SINE Alu -15 298 1 22 0 0 0 chr1 270683532 270683554 -11510110 + AT_rich Low_complexity Low_complexity 1 22 0 2203 93 4 0 chr1 270684166 270684492 -11509172 + AluSx SINE Alu 1 327 0 258 316 228 5 chr1 270684576 270684782 -11508882 + MARNA DNA Mariner 126 377 -209 2239 107 3 0 chr1 270686199 270686499 -11507165 + AluSq SINE Alu 2 302 -11 2081 88 41 10 chr1 270686590 270686884 -11506780 - AluSg SINE Alu -4 306 4 180 297 31 0 chr1 270686935 270686999 -11506665 + L2 LINE L2 3207 3272 0 2157 115 3 0 chr1 270687377 270687665 -11505999 - AluSx SINE Alu -18 294 6 553 267 99 30 chr1 270687672 270687934 -11505730 + L2 LINE L2 3023 3302 -11 2253 81 0 62 chr1 270688072 270688395 -11505269 + AluY SINE Alu 1 303 -8 29 28 0 0 chr1 270688679 270688715 -11504949 + AT_rich Low_complexity Low_complexity 1 36 0 203 267 0 33 chr1 270691252 270691312 -11502352 + L2 LINE L2 3137 3194 -78 2101 139 10 0 chr1 270692276 270692577 -11501087 - AluSx SINE Alu -8 304 1 2367 82 0 10 chr1 270692811 270693115 -11500549 + AluSx SINE Alu 1 301 -11 1705 159 201 5 chr1 270693626 270693705 -11499959 + L1MB4 LINE L1 5704 5766 -414 420 20 0 0 chr1 270693705 270693754 -11499910 + (CA)n Simple_repeat Simple_repeat 2 50 0 1705 159 201 5 chr1 270693754 270694058 -11499606 + L1MB4 LINE L1 5766 6162 -18 432 55 0 0 chr1 270694065 270694120 -11499544 + (CA)n Simple_repeat Simple_repeat 2 56 0 24 32 0 0 chr1 270694280 270694311 -11499353 + AT_rich Low_complexity Low_complexity 1 31 0 2239 131 14 34 chr1 270695021 270695148 -11498516 + MER2 DNA MER2_type 2 130 -214 2089 122 17 0 chr1 270695148 270695444 -11498220 - AluY SINE Alu -10 301 1 2239 131 14 34 chr1 270695444 270695666 -11497998 + MER2 DNA MER2_type 130 344 0 183 129 0 0 chr1 270695670 270695701 -11497963 + (TA)n Simple_repeat Simple_repeat 2 32 0 891 238 141 44 chr1 270696541 270696761 -11496903 + MER21B LTR ERV1 1 263 -600 3558 145 58 39 chr1 270696761 270697383 -11496281 + MER51A LTR ERV1 1 634 0 891 238 141 44 chr1 270697383 270697481 -11496183 + MER21B LTR ERV1 263 350 -513 1373 173 29 94 chr1 270697587 270697929 -11495735 + LTR10B LTR ERV1 228 547 0 1096 233 46 6 chr1 270697932 270698243 -11495421 + HERVI LTR ERV1 5 352 -6297 516 228 16 130 chr1 270698245 270698491 -11495173 + HERVI LTR ERV1 602 819 -5830 1267 133 0 0 chr1 270698555 270698721 -11494943 - AluSq SINE Alu -147 166 1 304 169 0 56 chr1 270698721 270698792 -11494872 - L2 LINE L2 -89 3224 3158 864 147 9 7 chr1 270698827 270698986 -11494678 - L1M4 LINE L1 -2201 3945 3785 2249 283 126 14 chr1 270698986 270699995 -11493669 - L2 LINE L2 -230 3083 1962 8082 260 43 35 chr1 270700187 270702615 -11491049 + LTR54B-int LTR ERV1 4201 6648 -1 1262 203 74 94 chr1 270702649 270703054 -11490610 + LTR10B LTR ERV1 151 547 0 564 224 96 24 chr1 270703097 270703390 -11490274 + MER21B LTR ERV1 408 801 -62 1898 181 143 20 chr1 270703768 270704210 -11489454 + LTR54B LTR ERV1 1 496 -2 384 279 91 35 chr1 270705375 270705572 -11488092 - L1ME4a LINE L1 -232 5889 5682 1014 99 0 0 chr1 270705658 270705789 -11487875 + AluSg SINE Alu 3 133 -177 25 31 0 0 chr1 270706132 270706164 -11487500 + AT_rich Low_complexity Low_complexity 1 32 0 453 222 146 49 chr1 270706675 270706860 -11486804 + MER115 DNA AcHobo 22 224 -469 25 75 0 0 chr1 270706954 270707007 -11486657 + AT_rich Low_complexity Low_complexity 1 53 0 224 307 26 0 chr1 270707485 270707638 -11486026 + (TA)n Simple_repeat Simple_repeat 1 157 0 1743 180 3 35 chr1 270707732 270708049 -11485615 - AluJo SINE Alu -5 307 1 2415 90 0 0 chr1 270708081 270708382 -11485282 - AluSq SINE Alu -12 301 1 507 299 142 60 chr1 270708438 270708869 -11484795 - L2 LINE L2 0 3272 2807 334 220 230 20 chr1 270709188 270709388 -11484276 - L1MEd LINE L1 -4914 1205 964 389 202 35 70 chr1 270709406 270709520 -11484144 + MIR SINE MIR 79 188 -74 1466 162 3 61 chr1 270709523 270709820 -11483844 + AluJb SINE Alu 12 291 -21 324 210 0 0 chr1 270710184 270710246 -11483418 + MIR SINE MIR 201 262 0 1581 170 0 45 chr1 270712124 270712412 -11481252 - AluJo SINE Alu -37 275 1 250 364 115 23 chr1 270712429 270712713 -11480951 + L2 LINE L2 2782 3091 -181 300 369 32 37 chr1 270712744 270712961 -11480703 + L2 LINE L2 2567 2782 -532 2339 110 3 0 chr1 270713048 270713356 -11480308 + AluSx SINE Alu 1 309 -3 2003 137 0 0 chr1 270713568 270713852 -11479812 + AluSx SINE Alu 1 315 0 231 0 0 32 chr1 270713852 270713883 -11479781 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr1 270714586 270714607 -11479057 + AT_rich Low_complexity Low_complexity 1 21 0 3793 163 76 38 chr1 270715483 270716187 -11477477 + Looper DNA T2_type 1 749 -809 2174 75 4 7 chr1 270716187 270716538 -11477126 + AluSc SINE Alu 1 350 0 3793 163 76 38 chr1 270716538 270716724 -11476940 + Looper DNA T2_type 749 926 -632 2937 135 22 30 chr1 270716772 270717305 -11476359 + L1MA9 LINE L1 5784 6312 0 373 121 0 0 chr1 270718002 270718068 -11475596 + Looper DNA T2_type 1399 1464 -94 2510 56 0 7 chr1 270718395 270718701 -11474963 - AluY SINE Alu -7 304 1 308 320 34 67 chr1 270718739 270718917 -11474747 - MIR SINE MIR -82 180 9 2242 112 0 3 chr1 270719176 270719481 -11474183 - AluSq SINE Alu -9 304 1 366 96 0 0 chr1 270719534 270719586 -11474078 + Alu SINE Alu 1 52 -251 2391 90 3 0 chr1 270720909 270721219 -11472445 + AluSp SINE Alu 1 311 -2 1780 100 0 4 chr1 270723071 270723310 -11470354 - AluSx SINE Alu -55 257 20 363 275 115 113 chr1 270724776 270725486 -11468178 + L1M2 LINE L1 287 1001 -5848 228 100 0 0 chr1 270725486 270725526 -11468138 + (CCCCCG)n Simple_repeat Simple_repeat 2 41 0 363 275 115 113 chr1 270725526 270725612 -11468052 + L1M2 LINE L1 1001 1085 -5764 1415 122 0 0 chr1 270725719 270725907 -11467757 + AluSg/x SINE Alu 96 283 -29 255 31 0 0 chr1 270725908 270725940 -11467724 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 2243 98 0 14 chr1 270725961 270726257 -11467407 - AluSx SINE Alu -20 292 1 1782 152 28 7 chr1 270726315 270726604 -11467060 + AluJb SINE Alu 1 295 -17 2227 104 7 7 chr1 270726607 270726915 -11466749 + AluY SINE Alu 1 308 -3 2351 88 0 16 chr1 270727571 270727888 -11465776 - AluSx SINE Alu 0 312 1 206 243 155 48 chr1 270728056 270728159 -11465505 + L2 LINE L2 3199 3312 -1 180 216 0 0 chr1 270728521 270728558 -11465106 - MER5A DNA MER1_type -64 125 89 688 277 25 38 chr1 270728716 270728951 -11464713 - MIR SINE MIR -6 256 25 2532 56 0 10 chr1 270729203 270729508 -11464156 - AluY SINE Alu -9 302 1 210 260 240 58 chr1 270731256 270731360 -11462304 + L2 LINE L2 3145 3267 -5 23 0 0 0 chr1 270731784 270731807 -11461857 + AT_rich Low_complexity Low_complexity 1 23 0 2454 84 0 6 chr1 270732163 270732474 -11461190 + AluY SINE Alu 1 309 -2 5035 83 45 1 chr1 270732673 270733423 -11460241 - L1PA8 LINE L1 -6 6166 5384 3845 104 12 0 chr1 270733423 270734031 -11459633 + L1M LINE L1 4753 5368 -794 1090 256 21 97 chr1 270734338 270734763 -11458901 - L2 LINE L2 -3 3310 2918 2237 77 0 0 chr1 270734921 270735195 -11458469 + AluSg SINE Alu 1 274 -36 252 0 0 0 chr1 270735198 270735226 -11458438 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 5779 118 13 0 chr1 270737345 270738369 -11455295 - L1PA14 LINE L1 -18 6143 5106 22 0 0 0 chr1 270738463 270738485 -11455179 + AT_rich Low_complexity Low_complexity 1 22 0 544 243 140 36 chr1 270738588 270738810 -11454854 - MIR SINE MIR -10 252 8 1905 169 0 0 chr1 270738975 270739259 -11454405 - AluJo SINE Alu -28 284 1 2221 120 0 3 chr1 270739366 270739666 -11453998 - AluSx SINE Alu -13 299 1 820 240 75 49 chr1 270739747 270740166 -11453498 + MER39 LTR ERV1 1 643 -64 200 237 0 0 chr1 270740799 270740837 -11452827 + L2 LINE L2 3187 3224 -48 2261 110 7 0 chr1 270740918 270741226 -11452438 + AluSg SINE Alu 1 310 0 424 243 165 34 chr1 270741229 270741384 -11452280 + L1ME4a LINE L1 5625 5758 -363 1304 145 4 37 chr1 270741384 270741626 -11452038 - MER46A DNA MER2_type -1 235 2 424 243 165 34 chr1 270741626 270741906 -11451758 + L1ME4a LINE L1 5758 6117 -4 2924 176 51 4 chr1 270741945 270742478 -11451186 + MER68 LTR ERV1 1 558 -4 23 54 0 0 chr1 270743297 270743334 -11450330 + AT_rich Low_complexity Low_complexity 1 37 0 778 231 94 109 chr1 270744152 270744759 -11448905 + MLT1G1 LTR MaLR 1 567 0 25 0 0 0 chr1 270745598 270745623 -11448041 + AT_rich Low_complexity Low_complexity 1 25 0 268 256 219 36 chr1 270746006 270746143 -11447521 + L2 LINE L2 3152 3313 0 1069 160 9 69 chr1 270747098 270747329 -11446335 + MER20 DNA MER1_type 3 219 0 579 335 14 23 chr1 270747540 270747761 -11445903 + L3 LINE CR1 974 1192 -385 292 288 65 58 chr1 270747870 270748009 -11445655 + L3 LINE CR1 1187 1326 -251 292 89 0 36 chr1 270748466 270748522 -11445142 + L1MB7 LINE L1 6112 6165 -19 216 0 0 0 chr1 270748705 270748729 -11444935 + (TTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr1 270750367 270750389 -11443275 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 270751281 270751303 -11442361 + AT_rich Low_complexity Low_complexity 1 22 0 2019 91 0 0 chr1 270751483 270751737 -11441927 - AluSx SINE Alu -58 254 1 565 193 123 0 chr1 270751937 270752051 -11441613 - AluSx SINE Alu -19 293 166 * 662 101 0 0 chr1 270752046 270752135 -11441529 - AluSx SINE Alu -223 89 1 656 181 28 183 chr1 270752279 270752590 -11441074 - L1MC5 LINE L1 -849 7112 6875 2052 139 3 0 chr1 270752590 270752891 -11440773 - AluSq SINE Alu -11 302 1 656 181 28 183 chr1 270752891 270752978 -11440686 - L1MC5 LINE L1 -1086 6875 6776 441 169 59 17 chr1 270752979 270753097 -11440567 + L1MC4 LINE L1 7130 7252 -790 817 239 98 56 chr1 270753235 270753469 -11440195 + L1MC5 LINE L1 7268 7491 -470 2452 88 3 0 chr1 270753469 270753776 -11439888 + AluSc SINE Alu 1 308 -1 817 239 98 56 chr1 270753776 270754165 -11439499 + L1MC5 LINE L1 7491 7917 -44 334 230 54 0 chr1 270754615 270754689 -11438975 - MIR SINE MIR -183 79 2 232 241 172 0 chr1 270754873 270754960 -11438704 + MIR SINE MIR 105 206 -56 1022 250 170 19 chr1 270755369 270755948 -11437716 - L2 LINE L2 0 3313 2650 2258 93 0 0 chr1 270756054 270756357 -11437307 - AluSg SINE Alu 0 303 1 2966 226 143 14 chr1 270756505 270757359 -11436305 - L2 LINE L2 -661 2653 1690 23 54 0 0 chr1 270757793 270757830 -11435834 + AT_rich Low_complexity Low_complexity 1 37 0 887 262 92 93 chr1 270757855 270757935 -11435729 + L1MEd LINE L1 11 90 -6029 2410 132 65 19 chr1 270757935 270758399 -11435265 - L1MC2 LINE L1 -4 6340 5856 887 262 92 93 chr1 270758399 270758725 -11434939 + L1MEd LINE L1 90 418 -5701 2343 110 0 0 chr1 270758725 270759035 -11434629 + AluSx SINE Alu 1 310 -2 887 262 92 93 chr1 270759035 270759313 -11434351 + L1MEd LINE L1 418 695 -5424 239 214 71 0 chr1 270760001 270760057 -11433607 - L2 LINE L2 -3 3310 3251 2461 84 3 6 chr1 270760686 270760997 -11432667 - AluSx SINE Alu -2 310 1 30 27 0 0 chr1 270760997 270761034 -11432630 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr1 270761483 270761508 -11432156 + AT_rich Low_complexity Low_complexity 1 25 0 433 313 114 0 chr1 270761852 270762018 -11431646 + MIR SINE MIR 75 259 -3 916 207 11 11 chr1 270762441 270762620 -11431044 - MER5A DNA MER1_type -6 183 5 30 83 0 0 chr1 270763578 270763650 -11430014 + AT_rich Low_complexity Low_complexity 1 72 0 259 250 92 72 chr1 270763727 270763879 -11429785 + MIR SINE MIR 81 235 -27 * 624 201 54 7 chr1 270763829 270763978 -11429686 - MIR SINE MIR -56 206 51 285 219 0 0 chr1 270764068 270764141 -11429523 + (TA)n Simple_repeat Simple_repeat 2 74 0 435 38 0 0 chr1 270764141 270764194 -11429470 + (TG)n Simple_repeat Simple_repeat 2 54 0 2146 103 10 7 chr1 270765130 270765431 -11428233 - AluSx SINE Alu -10 302 1 24 32 0 0 chr1 270765492 270765523 -11428141 + AT_rich Low_complexity Low_complexity 1 31 0 427 300 71 21 chr1 270765743 270765874 -11427790 - L1ME LINE L1 -297 5824 5701 970 152 12 6 chr1 270765874 270766039 -11427625 - FRAM SINE Alu 0 166 1 427 300 71 21 chr1 270766039 270766147 -11427517 - L1ME LINE L1 -420 5701 5573 24 32 0 0 chr1 270767493 270767524 -11426140 + AT_rich Low_complexity Low_complexity 1 31 0 303 286 154 15 chr1 270768383 270768649 -11425015 + L1MC5 LINE L1 7610 7912 -49 21 0 0 0 chr1 270768651 270768672 -11424992 + AT_rich Low_complexity Low_complexity 1 21 0 822 265 77 67 chr1 270770167 270771467 -11422197 + L1MC5 LINE L1 5755 6949 -859 189 74 0 0 chr1 270773182 270773209 -11420455 + (A)n Simple_repeat Simple_repeat 1 27 0 495 265 7 13 chr1 270773224 270773375 -11420289 + L1MC4 LINE L1 7094 7243 -799 2139 193 35 101 chr1 270773837 270774530 -11419134 - L1ME2 LINE L1 -9 6155 5510 2850 131 12 38 chr1 270775387 270775746 -11417918 + L1MB3 LINE L1 5698 6042 -141 2074 128 0 0 chr1 270775746 270776043 -11417621 + AluSx SINE Alu 1 297 -15 2850 131 12 38 chr1 270776043 270776180 -11417484 + L1MB3 LINE L1 6042 6181 -2 22 0 0 0 chr1 270776236 270776258 -11417406 + AT_rich Low_complexity Low_complexity 1 22 0 1647 159 78 28 chr1 270776384 270776705 -11416959 + MER44D DNA MER2_type 2 608 -1 21 36 0 0 chr1 270777389 270777417 -11416247 + AT_rich Low_complexity Low_complexity 1 28 0 1755 168 26 3 chr1 270778192 270778496 -11415168 + AluJb SINE Alu 2 312 0 625 62 11 199 chr1 270778567 270778658 -11415006 - L1MDa LINE L1 -4076 2464 2420 939 103 77 13 chr1 270778658 270778814 -11414850 - L1MA9 LINE L1 -4 6308 6143 625 62 11 199 chr1 270778814 270778898 -11414766 - L1MDa LINE L1 -4120 2420 2322 2281 174 61 15 chr1 270778903 270779670 -11413994 + L1MD1 LINE L1 5398 6222 -20 244 209 194 15 chr1 270781370 270781437 -11412227 + MIR3 SINE MIR 81 159 -49 267 248 31 26 chr1 270781467 270781599 -11412065 + L2 LINE L2 3131 3302 -11 494 288 101 35 chr1 270781889 270782177 -11411487 + L1ME4a LINE L1 5658 5964 -157 235 297 0 27 chr1 270783137 270783211 -11410453 + MIR3 SINE MIR 137 208 0 251 250 13 40 chr1 270784104 270784180 -11409484 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 502 296 24 32 chr1 270784494 270784619 -11409045 + L2 LINE L2 3143 3266 -6 21 0 0 0 chr1 270786236 270786257 -11407407 + AT_rich Low_complexity Low_complexity 1 21 0 345 185 0 0 chr1 270786472 270786537 -11407127 - L1PA14 LINE L1 -3 6158 6094 23 0 0 0 chr1 270786589 270786612 -11407052 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 270787173 270787194 -11406470 + AT_rich Low_complexity Low_complexity 1 21 0 296 281 65 59 chr1 270787251 270787404 -11406260 + MIR SINE MIR 47 200 -62 1978 134 26 0 chr1 270787793 270788098 -11405566 - AluSq SINE Alu 0 313 1 1917 146 3 25 chr1 270788366 270788682 -11404982 + AluJo SINE Alu 2 310 -2 2334 100 0 3 chr1 270788682 270788991 -11404673 + AluSg SINE Alu 1 309 -1 23 0 0 0 chr1 270789255 270789278 -11404386 + AT_rich Low_complexity Low_complexity 1 23 0 246 203 27 0 chr1 270789577 270789651 -11404013 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 218 321 55 46 chr1 270789993 270790102 -11403562 + L2 LINE L2 3141 3250 -22 522 281 123 15 chr1 270790260 270790463 -11403201 - L2 LINE L2 -88 3225 3001 294 82 20 0 chr1 270790643 270790692 -11402972 + L1PB3 LINE L1 6105 6154 0 24 32 0 0 chr1 270790787 270790818 -11402846 + AT_rich Low_complexity Low_complexity 1 31 0 882 159 148 0 chr1 270791259 270791435 -11402229 - MER3 DNA MER1_type -6 203 2 762 183 26 13 chr1 270793335 270793488 -11400176 - FRAM SINE Alu -22 154 1 454 341 129 5 chr1 270793699 270793916 -11399748 + MIR SINE MIR 12 255 -7 709 218 22 34 chr1 270794112 270794291 -11399373 + MER5A DNA MER1_type 10 186 -3 694 164 0 0 chr1 270794545 270794661 -11399003 + AluJb SINE Alu 1 116 -196 29 0 0 0 chr1 270794661 270794690 -11398974 + AT_rich Low_complexity Low_complexity 1 29 0 1716 51 0 0 chr1 270795494 270795710 -11397954 + L1PA4 LINE L1 5940 6155 0 394 322 183 26 chr1 270796826 270797029 -11396635 + L2 LINE L2 2266 2436 -836 1797 146 10 27 chr1 270797029 270797330 -11396334 - AluSx SINE Alu -15 297 2 394 322 183 26 chr1 270797330 270797780 -11395884 + L2 LINE L2 2436 3063 -209 2186 117 0 9 chr1 270798060 270798376 -11395288 - AluSp SINE Alu 0 313 1 241 336 74 45 chr1 270798428 270798875 -11394789 + L2 LINE L2 1976 2435 -879 951 226 77 9 chr1 270800120 270800341 -11393323 + MIR SINE MIR 23 258 -4 189 234 0 0 chr1 270800343 270800407 -11393257 + (CTA)n Simple_repeat Simple_repeat 1 64 0 284 284 126 39 chr1 270800494 270800621 -11393043 - MIR SINE MIR -79 183 46 390 289 17 58 chr1 270800896 270801069 -11392595 - MIR3 SINE MIR -39 169 4 184 415 92 16 chr1 270801156 270801701 -11391963 + L2 LINE L2 1630 2215 -1099 617 362 81 34 chr1 270802522 270802931 -11390733 - L2 LINE L2 0 3272 2845 1412 167 48 107 chr1 270805180 270805514 -11388150 - MER69 DNA AcHobo -91 2435 2128 1714 173 3 10 chr1 270805514 270805809 -11387855 + AluJb SINE Alu 1 293 -19 1412 167 48 107 chr1 270805809 270805887 -11387777 - MER69 DNA AcHobo -398 2128 2047 1832 166 3 6 chr1 270806608 270806921 -11386743 + AluSx SINE Alu 1 312 0 2319 159 60 7 chr1 270806943 270807390 -11386274 + L1MB3 LINE L1 5711 6181 -2 23 0 0 0 chr1 270810339 270810362 -11383302 + AT_rich Low_complexity Low_complexity 1 23 0 214 200 0 0 chr1 270811194 270811229 -11382435 - MIR SINE MIR -23 239 205 23 33 0 0 chr1 270811464 270811494 -11382170 + AT_rich Low_complexity Low_complexity 1 30 0 1590 203 0 0 chr1 270811505 270811672 -11381992 - AluJo SINE Alu -21 291 122 216 0 0 0 chr1 270811672 270811696 -11381968 + (TA)n Simple_repeat Simple_repeat 2 25 0 1590 203 0 0 chr1 270811696 270811819 -11381845 - AluJo SINE Alu -189 123 1 198 0 0 0 chr1 270811940 270811962 -11381702 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2117 82 3 51 chr1 270811966 270812260 -11381404 - AluSg SINE Alu -30 280 1 2419 87 0 0 chr1 270812430 270812740 -11380924 - AluSq SINE Alu -3 310 1 1029 147 68 6 chr1 270813030 270813207 -11380457 + MER5A DNA MER1_type 1 188 -1 307 250 124 37 chr1 270813230 270813350 -11380314 - MER20B DNA MER1_type -26 193 81 1817 163 10 7 chr1 270813698 270814004 -11379660 + AluJo SINE Alu 1 307 -5 28 0 0 0 chr1 270814405 270814433 -11379231 + AT_rich Low_complexity Low_complexity 1 28 0 248 260 13 0 chr1 270815256 270815333 -11378331 - HsTC2 DNA Tc2 -1820 78 1 403 117 17 0 chr1 270815447 270815507 -11378157 - FRAM SINE Alu -39 137 77 2213 81 34 17 chr1 270815751 270816046 -11377618 - AluY SINE Alu -11 300 1 29 59 0 15 chr1 270816959 270817000 -11376664 + AT_rich Low_complexity Low_complexity 1 42 -25 1784 44 4 4 chr1 270817000 270817226 -11376438 + L1PA8 LINE L1 5939 6164 -8 29 59 0 15 chr1 270817226 270817252 -11376412 + AT_rich Low_complexity Low_complexity 42 67 0 1924 163 0 10 chr1 270817447 270817753 -11375911 - AluJb SINE Alu -9 303 1 1010 232 46 17 chr1 270818072 270818313 -11375351 + MIR SINE MIR 2 249 -13 658 290 75 61 chr1 270818676 270819052 -11374612 + L2 LINE L2 2933 3313 0 253 329 59 0 chr1 270819108 270819193 -11374471 + MIR SINE MIR 157 246 -16 6280 34 1 0 chr1 270819891 270820634 -11373030 + L1PA5 LINE L1 5411 6154 0 24 32 0 0 chr1 270821212 270821243 -11372421 + AT_rich Low_complexity Low_complexity 1 31 0 1986 105 0 89 chr1 270821704 270822061 -11371603 - AluSx SINE Alu 0 329 1 321 218 211 10 chr1 270823452 270823570 -11370094 - MIR SINE MIR -57 205 67 348 303 179 18 chr1 270823821 270824039 -11369625 + MIR SINE MIR 5 257 -5 400 83 0 17 chr1 270824513 270824573 -11369091 + AluSp SINE Alu 74 132 -181 2237 104 13 0 chr1 270824575 270824883 -11368781 + AluSq SINE Alu 1 312 -1 2292 98 0 0 chr1 270825893 270826188 -11367476 - AluSx SINE Alu -17 295 1 2311 101 0 0 chr1 270826239 270826537 -11367127 - AluSq SINE Alu -15 298 1 2211 106 0 0 chr1 270827389 270827706 -11365958 - AluSx SINE Alu 0 312 1 229 229 144 76 chr1 270828027 270828145 -11365519 - MIR SINE MIR 0 262 137 185 318 111 0 chr1 270828337 270828400 -11365264 - L2 LINE L2 -530 2784 2715 509 359 36 21 chr1 270828899 270829091 -11364573 + MER91A DNA MER1_type 1 195 -1 604 308 115 28 chr1 270829397 270829754 -11363910 + HAL1 LINE L1 894 1281 -1226 2639 174 39 41 chr1 270829767 270830096 -11363568 + L1MB7 LINE L1 5058 5386 -798 1328 195 169 15 chr1 270830096 270830439 -11363225 + MSTD LTR MaLR 1 396 0 2639 174 39 41 chr1 270830439 270830872 -11362792 + L1MB7 LINE L1 5386 5829 -355 1122 158 37 0 chr1 270830868 270831058 -11362606 + L1MC3 LINE L1 7182 7378 -407 * 2239 176 21 19 chr1 270831057 270831650 -11362014 + L1MB8 LINE L1 4855 5448 -732 1137 147 54 15 chr1 270831651 270831855 -11361809 + L1MC3 LINE L1 7375 7586 -199 878 191 41 0 chr1 270831855 270832049 -11361615 + L1MC2 LINE L1 6133 6334 -10 844 105 8 0 chr1 270832058 270832182 -11361482 + AluSp/q SINE Alu 189 313 0 1627 120 71 84 chr1 270832239 270832606 -11361058 + L1MB8 LINE L1 5814 6175 -3 240 266 85 11 chr1 270832603 270832697 -11360967 + HAL1 LINE L1 1287 1387 -1120 * 2252 147 24 44 chr1 270832701 270833157 -11360507 + L1MC4a LINE L1 7000 7446 -362 315 259 95 51 chr1 270833309 270833467 -11360197 + MIR SINE MIR 48 212 -50 2019 134 33 10 chr1 270833518 270833823 -11359841 - AluJo SINE Alu 0 312 1 2396 94 0 0 chr1 270835487 270835794 -11357870 + AluSg SINE Alu 1 307 -3 298 278 67 24 chr1 270836044 270836252 -11357412 + L2 LINE L2 2955 3226 -87 23 0 0 0 chr1 270838298 270838321 -11355343 + AT_rich Low_complexity Low_complexity 1 23 0 714 195 24 18 chr1 270838721 270838885 -11354779 - LTR16A1 LTR ERVL -58 399 235 251 226 16 16 chr1 270838983 270839045 -11354619 - LTR16A1 LTR ERVL -388 69 8 317 158 82 0 chr1 270839125 270839283 -11354381 + (TA)n Simple_repeat Simple_repeat 1 171 0 21 0 0 0 chr1 270841264 270841285 -11352379 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr1 270841402 270841438 -11352226 + AT_rich Low_complexity Low_complexity 1 36 0 301 284 117 18 chr1 270841466 270841688 -11351976 - L1ME4a LINE L1 -154 5967 5724 2171 129 0 3 chr1 270844435 270844745 -11348919 + AluSx SINE Alu 1 309 -3 287 224 12 94 chr1 270845077 270845162 -11348502 + L2 LINE L2 3236 3313 0 21 36 0 0 chr1 270845564 270845592 -11348072 + AT_rich Low_complexity Low_complexity 1 28 0 2120 123 0 10 chr1 270845795 270846097 -11347567 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 270847072 270847094 -11346570 + AT_rich Low_complexity Low_complexity 1 22 0 191 139 28 0 chr1 270847121 270847157 -11346507 - L2 LINE L2 -8 3305 3269 755 353 104 26 chr1 270847511 270848347 -11345317 - L2 LINE L2 -660 2654 1754 686 299 120 21 chr1 270848744 270849069 -11344595 - L2 LINE L2 -1 3312 2956 2881 181 16 26 chr1 270849105 270849424 -11344240 + L1 LINE L1 4231 4552 -1594 2376 91 3 0 chr1 270849424 270849732 -11343932 + AluSc SINE Alu 1 309 0 2110 119 3 7 chr1 270849733 270850043 -11343621 + AluSc SINE Alu 1 309 0 2881 181 16 26 chr1 270850043 270850336 -11343328 + L1 LINE L1 4551 4839 -1307 5966 100 19 7 chr1 270850336 270851454 -11342210 + L1PA15 LINE L1 5019 6162 -3 267 284 12 80 chr1 270851741 270851903 -11341761 - L2 LINE L2 -414 2900 2750 2333 80 3 3 chr1 270853219 270853519 -11340145 - AluY SINE Alu -11 300 1 203 269 0 0 chr1 270853626 270853678 -11339986 - L2 LINE L2 0 3313 3262 2035 160 0 3 chr1 270853931 270854244 -11339420 - AluJb SINE Alu 0 312 1 1658 183 3 33 chr1 270854731 270855037 -11338627 + AluJb SINE Alu 3 299 -13 858 214 112 11 chr1 270855194 270855381 -11338283 - MER58C DNA MER1_type 0 215 10 1242 237 144 34 chr1 270856248 270856694 -11336970 + MLT1H LTR MaLR 15 549 0 343 372 156 29 chr1 270857070 270857555 -11336109 + L2 LINE L2 2724 3267 -5 348 344 47 0 chr1 270858002 270858130 -11335534 - MIR3 SINE MIR -27 181 48 3609 214 55 19 chr1 270858255 270858314 -11335350 + L1ME2 LINE L1 3781 3836 -2310 2211 103 0 3 chr1 270858314 270858635 -11335029 + AluSg SINE Alu 2 321 0 3609 214 55 19 chr1 270858635 270859601 -11334063 + L1ME2 LINE L1 3836 4844 -1302 2813 197 96 39 chr1 270859583 270860256 -11333408 + L1ME2 LINE L1 5366 6088 -76 * 1870 154 0 7 chr1 270860256 270860541 -11333123 - AluJb SINE Alu -14 298 16 2813 197 96 39 chr1 270860541 270860614 -11333050 + L1ME2 LINE L1 6088 6155 -9 1932 145 0 16 chr1 270860655 270860959 -11332705 + AluSx SINE Alu 1 299 -13 956 197 34 13 chr1 270861460 270861693 -11331971 + L1MB8 LINE L1 5254 5491 -671 1098 173 4 17 chr1 270861794 270862025 -11331639 + L1MB8 LINE L1 5945 6172 -6 757 237 26 4 chr1 270862040 270862268 -11331396 - L1M4 LINE L1 -1536 4610 4378 24 0 0 0 chr1 270862421 270862445 -11331219 + AT_rich Low_complexity Low_complexity 1 24 0 1896 148 7 7 chr1 270862496 270862786 -11330878 + AluSx SINE Alu 1 290 -22 256 311 94 9 chr1 270863170 270863276 -11330388 + MIR3 SINE MIR 92 206 -2 26 50 0 0 chr1 270864342 270864382 -11329282 + AT_rich Low_complexity Low_complexity 1 40 0 261 175 188 12 chr1 270865470 270865550 -11328114 - HsTC2a DNA Tc2 -33 709 616 * 933 255 102 30 chr1 270865547 270865920 -11327744 - HsTC2a DNA Tc2 -318 426 27 309 245 99 82 chr1 270866106 270866361 -11327303 - L1MC/D LINE L1 -311 5810 5645 418 315 121 42 chr1 270866383 270866739 -11326925 - L1MC/D LINE L1 -1698 4448 4065 244 252 54 54 chr1 270866967 270867078 -11326586 - L1ME LINE L1 -347 5823 5713 32 0 0 0 chr1 270867963 270867995 -11325669 + AT_rich Low_complexity Low_complexity 1 32 0 865 138 0 0 chr1 270867995 270868111 -11325553 - FLAM_C SINE Alu -17 116 1 476 308 60 39 chr1 270868245 270868427 -11325237 - MER91A DNA MER1_type -10 186 1 2077 108 10 10 chr1 270868495 270868790 -11324874 - AluSq SINE Alu -18 295 1 206 238 88 12 chr1 270869738 270869818 -11323846 - L3 LINE CR1 -840 737 652 * 842 275 133 13 chr1 270869793 270870109 -11323555 - L2 LINE L2 -3 3310 2957 611 256 112 37 chr1 270870308 270870577 -11323087 - L2 LINE L2 -848 2466 2178 329 281 0 11 chr1 270870579 270870668 -11322996 + MER3 DNA MER1_type 1 88 -121 260 196 0 0 chr1 270870649 270870700 -11322964 - MER3 DNA MER1_type -118 91 41 * 1701 272 104 47 chr1 270870700 270870922 -11322742 - L2 LINE L2 -1138 2176 1968 1872 159 10 0 chr1 270870922 270871217 -11322447 + AluSx SINE Alu 4 301 -11 1701 272 104 47 chr1 270871217 270871780 -11321884 - L2 LINE L2 -1346 1968 1346 431 335 171 40 chr1 270871777 270872351 -11321313 - L3 LINE CR1 -928 649 1 * 995 97 0 0 chr1 270872574 270872698 -11320966 - AluJb SINE Alu -188 124 1 812 120 0 183 chr1 270872838 270873029 -11320635 - AluSg/x SINE Alu -20 292 137 1888 122 7 44 chr1 270873086 270873443 -11320221 + AluSx SINE Alu 2 347 0 212 317 250 0 chr1 270873720 270873840 -11319824 - L2 LINE L2 -91 3181 3032 457 321 100 7 chr1 270874073 270874213 -11319451 - MER5B DNA MER1_type -25 153 1 355 418 55 6 chr1 270874221 270874551 -11319113 - L2 LINE L2 -555 2759 2414 246 332 119 73 chr1 270874794 270874961 -11318703 - L2 LINE L2 -1505 1809 1651 774 161 130 47 chr1 270874961 270875153 -11318511 - MER63A DNA MER1_type -2 208 1 246 332 119 73 chr1 270875153 270876032 -11317632 - L2 LINE L2 -1663 1651 714 475 287 0 25 chr1 270876059 270876181 -11317483 + L2 LINE L2 3192 3310 -3 32 43 0 0 chr1 270876816 270876862 -11316802 + AT_rich Low_complexity Low_complexity 1 46 0 341 271 139 14 chr1 270877907 270878051 -11315613 - MIR3 SINE MIR -6 202 41 3407 222 106 14 chr1 270878551 270879612 -11314052 + L1PB1 LINE L1 6 1163 -5700 15640 183 18 13 chr1 270879635 270885137 -11308527 + L1PB1 LINE L1 1297 6865 -2 32 26 0 0 chr1 270885209 270885248 -11308416 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr1 270886279 270886301 -11307363 + AT_rich Low_complexity Low_complexity 1 22 0 203 212 74 9 chr1 270886362 270886427 -11307237 - MIR SINE MIR -56 152 86 728 254 48 24 chr1 270887718 270887927 -11305737 - MIR SINE MIR -7 255 42 189 260 100 40 chr1 270887957 270888057 -11305607 + L2 LINE L2 2346 2451 -863 541 246 49 26 chr1 270888107 270888310 -11305354 + MIR SINE MIR 56 261 -1 21 0 0 0 chr1 270889204 270889225 -11304439 + AT_rich Low_complexity Low_complexity 1 21 0 327 328 79 51 chr1 270889901 270890078 -11303586 + MIR3 SINE MIR 16 197 -11 1749 96 0 9 chr1 270890514 270890744 -11302920 - AluSg/x SINE Alu -8 302 75 238 271 0 0 chr1 270890744 270890792 -11302872 + MER94 DNA DNA 82 129 -5 582 292 39 35 chr1 270890974 270891234 -11302430 - L2 LINE L2 -1028 2286 2026 453 148 0 0 chr1 270891278 270891359 -11302305 + (CA)n Simple_repeat Simple_repeat 2 82 0 298 337 92 15 chr1 270891522 270891718 -11301946 + L2 LINE L2 549 759 -2555 458 258 62 72 chr1 270891726 270891964 -11301700 + MIR SINE MIR 17 262 0 400 337 153 34 chr1 270892462 270893023 -11300641 + L2 LINE L2 1177 1804 -1510 305 306 56 77 chr1 270893501 270893697 -11299967 - L3 LINE CR1 -1200 377 186 3018 142 33 8 chr1 270893746 270894233 -11299431 - L1MC1 LINE L1 0 6333 5835 672 204 33 13 chr1 270894242 270894260 -11299404 - L1MA10 LINE L1 -3 6331 6314 1020 239 33 69 chr1 270894260 270894649 -11299015 - L1ME1 LINE L1 -12 6154 5780 729 202 23 0 chr1 270895235 270895364 -11298300 - FLAM_A SINE Alu -1 132 1 1333 152 36 48 chr1 270895539 270895858 -11297806 + LTR54 LTR ERV1 1 374 -136 965 161 32 0 chr1 270895858 270896013 -11297651 + Tigger7 DNA MER2_type 1 160 -573 483 157 0 0 chr1 270896014 270896084 -11297580 + Tigger7 DNA MER2_type 2401 2470 -21 2072 123 0 0 chr1 270896087 270896372 -11297292 + AluSx SINE Alu 1 285 -27 384 40 0 0 chr1 270896372 270896422 -11297242 + (CA)n Simple_repeat Simple_repeat 2 51 0 839 153 29 0 chr1 270896445 270896582 -11297082 + LTR54 LTR ERV1 370 510 0 1853 132 4 4 chr1 270896684 270896965 -11296699 + AluY SINE Alu 1 281 -30 451 68 0 0 chr1 270896965 270897024 -11296640 - U5 snRNA snRNA -57 59 1 3344 114 19 2 chr1 270897397 270897872 -11295792 + MER31A LTR ERV1 1 483 -2 1258 251 134 55 chr1 270897906 270898223 -11295441 + L2 LINE L2 2356 2647 -666 1621 180 27 17 chr1 270898223 270898518 -11295146 + AluJb SINE Alu 1 298 -14 1258 251 134 55 chr1 270898518 270899083 -11294581 + L2 LINE L2 2647 3309 -4 312 277 149 59 chr1 270900149 270900471 -11293193 + L1M2 LINE L1 854 1216 -5633 180 77 0 0 chr1 270900471 270900497 -11293167 + (CCG)n Simple_repeat Simple_repeat 3 28 0 312 277 149 59 chr1 270900497 270900549 -11293115 + L1M2 LINE L1 1216 1262 -5587 617 100 0 0 chr1 270901733 270901823 -11291841 - Alu SINE Alu 0 311 222 287 261 0 15 chr1 270901864 270901929 -11291735 - L2 LINE L2 -2 3270 3207 2157 125 3 0 chr1 270902265 270902568 -11291096 - AluSx SINE Alu -8 304 1 2439 65 0 7 chr1 270902764 270903070 -11290594 + AluY SINE Alu 1 304 -7 895 262 71 23 chr1 270903267 270903602 -11290062 + L2 LINE L2 2705 3052 -261 426 241 20 133 chr1 270903603 270903773 -11289891 + Zaphod DNA AcHobo 2 147 -3884 2577 148 25 0 chr1 270903773 270904166 -11289498 + MER57A LTR ERV1 1 403 0 426 241 20 133 chr1 270904166 270904198 -11289466 + Zaphod DNA AcHobo 147 181 -3850 701 217 28 44 chr1 270904198 270904378 -11289286 + L2 LINE L2 3123 3299 -14 1121 237 98 89 chr1 270904861 270905401 -11288263 + MER41C LTR ERV1 1 545 -9 3023 168 65 71 chr1 270905465 270905587 -11288077 - MER39 LTR ERV1 0 682 561 2202 134 0 0 chr1 270905587 270905893 -11287771 + AluSx SINE Alu 1 306 -6 3023 168 65 71 chr1 270905893 270906223 -11287441 - MER39 LTR ERV1 -121 561 248 2081 106 21 3 chr1 270906223 270906505 -11287159 + AluSx SINE Alu 12 298 -14 3023 168 65 71 chr1 270906505 270906752 -11286912 - MER39 LTR ERV1 -434 248 1 240 297 51 59 chr1 270907990 270908108 -11285556 - L2 LINE L2 -171 3101 2985 599 211 173 0 chr1 270908517 270908650 -11285014 + MER5A DNA MER1_type 21 176 -13 193 231 77 31 chr1 270908665 270908730 -11284934 - L2 LINE L2 -307 2965 2898 1177 120 71 5 chr1 270909222 270909437 -11284227 + AluJo SINE Alu 86 312 0 1990 141 3 17 chr1 270909511 270909810 -11283854 + AluSg SINE Alu 1 295 -15 2256 97 7 0 chr1 270910979 270911279 -11282385 - AluSp SINE Alu -11 302 1 180 0 0 0 chr1 270911429 270911449 -11282215 + (A)n Simple_repeat Simple_repeat 1 20 0 853 121 8 0 chr1 270912462 270912586 -11281078 - L1PB4 LINE L1 -3 6153 6029 846 203 7 13 chr1 270912590 270912743 -11280921 - FRAM SINE Alu -24 152 1 2435 95 0 0 chr1 270913302 270913608 -11280056 - AluSx SINE Alu -4 308 3 1519 96 0 0 chr1 270914417 270914614 -11279050 + AluSq SINE Alu 1 197 -116 187 219 233 27 chr1 270914615 270914688 -11278976 - MIR SINE MIR -89 119 32 2273 172 29 51 chr1 270915014 270915622 -11278042 + L1MB3 LINE L1 5608 6173 -10 294 138 0 0 chr1 270915624 270915682 -11277982 + (CA)n Simple_repeat Simple_repeat 1 58 0 453 332 97 30 chr1 270915687 270916188 -11277476 - L2 LINE L2 -190 3082 2551 1411 186 77 7 chr1 270917535 270917695 -11275969 - AluJo SINE Alu -19 293 105 2797 3 0 3 chr1 270917695 270917994 -11275670 - AluYa5 SINE Alu -12 299 2 1411 186 77 7 chr1 270917994 270918107 -11275557 - AluJo SINE Alu -207 105 1 22 0 0 0 chr1 270918250 270918272 -11275392 + AT_rich Low_complexity Low_complexity 1 22 0 1659 152 8 4 chr1 270918363 270918627 -11275037 - AluJo SINE Alu -9 303 39 446 282 115 14 chr1 270918665 270918874 -11274790 - MIR SINE MIR -32 230 1 218 86 0 0 chr1 270918911 270918946 -11274718 + L2 LINE L2 3273 3307 -6 2411 83 3 3 chr1 270920137 270920438 -11273226 + AluSp SINE Alu 1 301 -12 436 305 46 31 chr1 270920866 270921125 -11272539 + L3 LINE CR1 702 964 -613 383 316 83 69 chr1 270921366 270921547 -11272117 + L3 LINE CR1 1011 1188 -389 839 156 0 15 chr1 270921547 270921682 -11271982 + FLAM_C SINE Alu 1 133 0 383 316 83 69 chr1 270921682 270921861 -11271803 + L3 LINE CR1 1188 1376 -201 3302 159 25 0 chr1 270922028 270922587 -11271077 + L1MB3 LINE L1 5565 6137 -46 2381 106 0 0 chr1 270922593 270922895 -11270769 + AluSx SINE Alu 1 302 -10 2063 149 0 0 chr1 270922895 270923197 -11270467 + AluSx SINE Alu 1 302 -10 261 0 0 0 chr1 270923217 270923246 -11270418 + (A)n Simple_repeat Simple_repeat 1 29 0 1895 147 0 14 chr1 270923264 270923557 -11270107 + AluJb SINE Alu 10 298 -14 2205 99 0 0 chr1 270923557 270923841 -11269823 + AluSx SINE Alu 1 284 -28 369 0 0 0 chr1 270923848 270923889 -11269775 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 551 264 145 22 chr1 270924566 270924793 -11268871 - MIR SINE MIR 0 262 8 2963 9 0 0 chr1 270924871 270925187 -11268477 - AluYb8 SINE Alu -2 316 1 1185 190 63 16 chr1 270925237 270925490 -11268174 + L1MD3 LINE L1 7730 7994 -1 315 211 240 10 chr1 270927137 270927241 -11266423 + MIR SINE MIR 21 148 -60 328 269 115 0 chr1 270927629 270927761 -11265903 + MIR SINE MIR 11 161 -62 261 0 0 0 chr1 270927935 270927964 -11265700 + (TA)n Simple_repeat Simple_repeat 2 30 0 2493 75 3 0 chr1 270927964 270928270 -11265394 - AluSp SINE Alu -6 307 1 26 0 0 0 chr1 270928280 270928306 -11265358 + AT_rich Low_complexity Low_complexity 1 26 0 383 0 21 0 chr1 270928323 270928370 -11265294 + (CA)n Simple_repeat Simple_repeat 2 49 0 2265 99 7 10 chr1 270928375 270928678 -11264986 - AluSq SINE Alu -11 302 1 1489 128 5 0 chr1 270928682 270928900 -11264764 - L1PA15 LINE L1 -9 6156 5938 278 242 0 0 chr1 270928901 270928963 -11264701 + L1PA15 LINE L1 5859 5920 -250 580 214 21 14 chr1 270928968 270929113 -11264551 + L1ME3A LINE L1 6022 6167 -3 653 140 9 0 chr1 270929121 270929235 -11264429 + L1MA5A LINE L1 6179 6293 -4 2476 80 0 6 chr1 270929294 270929606 -11264058 + AluY SINE Alu 1 310 -1 314 260 130 17 chr1 270929607 270929784 -11263880 - L1ME4a LINE L1 -50 6071 5875 385 267 127 23 chr1 270929823 270930044 -11263620 - L1ME4a LINE L1 -422 5699 5456 1993 139 41 0 chr1 270930077 270930200 -11263464 + AluJb SINE Alu 1 118 -194 198 0 0 0 chr1 270930200 270930222 -11263442 + (CA)n Simple_repeat Simple_repeat 2 23 0 1993 139 41 0 chr1 270930222 270930393 -11263271 + AluJb SINE Alu 118 307 -5 236 174 0 0 chr1 270930454 270930500 -11263164 + MIR SINE MIR 111 156 -106 2391 137 48 19 chr1 270930634 270931050 -11262614 + MSTA LTR MaLR 1 428 0 1414 168 79 34 chr1 270931245 270931398 -11262266 - AluJo SINE Alu -3 309 164 2293 99 3 0 chr1 270931398 270931691 -11261973 - AluSp SINE Alu -19 294 1 1414 168 79 34 chr1 270931691 270931829 -11261835 - AluJo SINE Alu -148 164 5 498 254 182 26 chr1 270931892 270932199 -11261465 + L2 LINE L2 2952 3306 -7 2022 156 51 34 chr1 270932199 270932546 -11261118 + LTR24C LTR ERV1 1 332 -135 2602 69 0 0 chr1 270932546 270932852 -11260812 - AluY SINE Alu -5 306 1 2022 156 51 34 chr1 270932852 270932991 -11260673 + LTR24C LTR ERV1 332 467 0 366 313 87 87 chr1 270933336 270933526 -11260138 - L2 LINE L2 0 3272 3083 2084 123 6 38 chr1 270933526 270933843 -11259821 + AluSx SINE Alu 2 308 -4 366 313 87 87 chr1 270933843 270933864 -11259800 - L2 LINE L2 -189 3083 3063 2492 61 30 0 chr1 270933864 270934161 -11259503 + AluY SINE Alu 1 306 -5 366 313 87 87 chr1 270934161 270934195 -11259469 - L2 LINE L2 -209 3063 3030 186 43 0 0 chr1 270934195 270934218 -11259446 + (GGA)n Simple_repeat Simple_repeat 2 24 0 366 313 87 87 chr1 270934218 270934417 -11259247 - L2 LINE L2 -241 3031 2826 183 80 0 0 chr1 270934692 270934717 -11258947 + (GA)n Simple_repeat Simple_repeat 2 26 0 736 233 89 16 chr1 270935063 270935321 -11258343 + LTR16A1 LTR ERVL 181 457 0 5108 74 8 1 chr1 270937290 270937940 -11255724 + L1PA8 LINE L1 5518 6171 -1 2381 96 0 0 chr1 270938039 270938340 -11255324 - AluSq SINE Alu -12 301 1 388 258 52 0 chr1 270938379 270938476 -11255188 - L2 LINE L2 -11 3302 3201 1838 154 14 20 chr1 270938659 270938952 -11254712 - AluJo SINE Alu -21 291 1 649 190 25 100 chr1 270939001 270939201 -11254463 + MLT1D LTR MaLR 1 185 -320 2253 116 0 3 chr1 270939207 270939517 -11254147 + AluSx SINE Alu 1 309 -3 943 130 68 7 chr1 270939525 270939671 -11253993 + FRAM SINE Alu 1 155 -21 1508 163 93 7 chr1 270939691 270939991 -11253673 + MLT1D LTR MaLR 180 505 0 229 292 10 52 chr1 270939991 270940087 -11253577 - MIR SINE MIR -151 111 20 450 326 34 11 chr1 270940299 270940477 -11253187 + MIR3 SINE MIR 19 200 -8 479 236 136 20 chr1 270941556 270941755 -11251909 + MIR SINE MIR 29 250 -12 2056 144 3 0 chr1 270941760 270942052 -11251612 - AluSx SINE Alu -16 296 4 248 336 52 0 chr1 270942178 270942312 -11251352 + L2 LINE L2 2392 2532 -782 463 311 40 77 chr1 270942745 270943121 -11250543 - L2 LINE L2 -3 3269 2908 229 160 13 120 chr1 270943177 270943200 -11250464 + L1MA8 LINE L1 6223 6247 -44 2368 56 3 0 chr1 270943200 270943488 -11250176 + AluY SINE Alu 21 309 -2 229 160 13 120 chr1 270943488 270943539 -11250125 + L1MA8 LINE L1 6247 6289 -2 237 322 74 0 chr1 270943539 270943660 -11250004 - L2 LINE L2 -463 2851 2722 506 245 98 22 chr1 270944674 270944858 -11248806 + MIR SINE MIR 23 220 -42 2060 93 0 4 chr1 270946143 270946402 -11247262 - AluSx SINE Alu -50 262 5 626 228 30 12 chr1 270946411 270946578 -11247086 - MIR SINE MIR -66 196 27 317 245 38 75 chr1 270946851 270946957 -11246707 - MER112 DNA MER1_type -6 254 153 299 287 9 17 chr1 270946968 270947083 -11246581 + MLT1L LTR MaLR 498 611 -4 497 282 99 30 chr1 270947088 270947350 -11246314 + L1ME LINE L1 5539 5818 -303 1882 127 42 0 chr1 270947382 270947666 -11245998 + AluSx SINE Alu 1 296 -16 296 237 79 53 chr1 270947756 270947870 -11245794 + L1MC4a LINE L1 7092 7208 -600 721 258 108 11 chr1 270947876 270948144 -11245520 + L1MC4 LINE L1 7313 7606 -436 587 184 61 6 chr1 270948148 270948311 -11245353 - Charlie5 DNA MER1_type -27 2585 2414 772 232 27 55 chr1 270948441 270948661 -11245003 + MLT1A2 LTR MaLR 1 214 -160 2049 137 0 0 chr1 270948665 270948984 -11244680 + AluSx SINE Alu 1 319 0 866 75 0 0 chr1 270948988 270949095 -11244569 + U6 snRNA snRNA 1 107 0 3877 54 13 2 chr1 270949095 270949689 -11243975 + L1PA7 LINE L1 5662 6260 0 501 47 0 0 chr1 270949689 270949753 -11243911 + (CGA)n Simple_repeat Simple_repeat 1 64 0 702 241 6 19 chr1 270949761 270949919 -11243745 + MLT1A2 LTR MaLR 215 370 -4 512 230 77 68 chr1 270949924 270950172 -11243492 + L1MC4 LINE L1 7781 8030 -12 2431 69 20 3 chr1 270950173 270950477 -11243187 - AluSc SINE Alu 0 309 1 209 291 139 12 chr1 270950667 270950753 -11242911 - MIR SINE MIR -10 252 156 396 269 15 46 chr1 270950875 270951005 -11242659 - MIR SINE MIR -110 152 27 31 44 0 0 chr1 270951448 270951493 -11242171 + AT_rich Low_complexity Low_complexity 1 45 0 281 223 43 11 chr1 270953037 270953104 -11240560 + CT-rich Low_complexity Low_complexity 2 74 -24 3210 176 41 8 chr1 270953104 270953745 -11239919 - L1MB5 LINE L1 0 6174 5513 281 223 43 11 chr1 270953745 270953771 -11239893 + CT-rich Low_complexity Low_complexity 74 98 0 255 185 98 33 chr1 270954393 270954485 -11239179 + MER5A DNA MER1_type 44 141 -48 312 70 0 0 chr1 270954700 270954743 -11238921 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 305 26 70 chr1 270954881 270954988 -11238676 - MIR SINE MIR -54 154 77 2320 153 64 9 chr1 270954988 270955427 -11238237 + MLT1C LTR MaLR 3 465 -2 225 305 26 70 chr1 270955427 270955462 -11238202 - MIR SINE MIR -131 77 42 273 281 0 34 chr1 270955816 270955905 -11237759 + MIR SINE MIR 90 175 -87 208 319 32 45 chr1 270955977 270956134 -11237530 - MER5B DNA MER1_type -22 156 2 321 238 0 0 chr1 270956365 270956466 -11237198 + (CA)n Simple_repeat Simple_repeat 1 101 0 1036 174 6 6 chr1 270957571 270957749 -11235915 - MER45A DNA AcHobo 0 178 1 196 173 96 0 chr1 270957768 270957820 -11235844 + L3 LINE CR1 1423 1479 -98 447 68 0 0 chr1 270958492 270958551 -11235113 + (TA)n Simple_repeat Simple_repeat 2 60 0 324 235 47 0 chr1 270958552 270958637 -11235027 - L1MC4 LINE L1 -1339 6703 6615 2163 110 0 20 chr1 270959157 270959458 -11234206 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr1 270959647 270959673 -11233991 + AT_rich Low_complexity Low_complexity 1 26 0 8708 172 14 10 chr1 270959673 270960242 -11233422 - L1PB3 LINE L1 -2 6152 5587 2450 93 3 0 chr1 270960242 270960554 -11233110 + AluSp SINE Alu 1 313 0 8708 172 14 10 chr1 270960554 270962529 -11231135 - L1PB3 LINE L1 -567 5587 3614 1511 237 9 0 chr1 270962768 270963105 -11230559 + MER58B DNA MER1_type 2 341 0 190 231 58 0 chr1 270963500 270963552 -11230112 - MIR SINE MIR -79 183 129 2301 87 0 17 chr1 270963563 270963862 -11229802 - AluSc SINE Alu -11 298 5 310 244 0 22 chr1 270963880 270963970 -11229694 - MIR SINE MIR -14 248 161 369 0 0 0 chr1 270964020 270964061 -11229603 + (CA)n Simple_repeat Simple_repeat 2 42 0 182 33 67 0 chr1 270964070 270964100 -11229564 + T-rich Low_complexity Low_complexity 2 33 0 1813 115 17 21 chr1 270964118 270964426 -11229238 - MER4D LTR ERV1 -578 294 1 1961 105 54 4 chr1 270965201 270965466 -11228198 + AluSx SINE Alu 6 287 -25 312 27 0 0 chr1 270965466 270965503 -11228161 + (CA)n Simple_repeat Simple_repeat 2 38 0 219 380 53 9 chr1 270965596 270965709 -11227955 - L2 LINE L2 -5 3267 3150 2261 109 3 0 chr1 270966461 270966763 -11226901 + AluSx SINE Alu 1 303 -9 438 276 22 50 chr1 270966959 270967140 -11226524 - MIR SINE MIR -54 208 33 450 0 0 0 chr1 270967903 270967953 -11225711 + (TG)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr1 270967999 270968020 -11225644 + (TA)n Simple_repeat Simple_repeat 1 21 0 1936 139 7 10 chr1 270968260 270968562 -11225102 - AluJo SINE Alu -11 301 1 321 284 37 82 chr1 270968679 270968813 -11224851 + L2 LINE L2 3169 3296 -17 267 88 0 0 chr1 270969005 270969039 -11224625 - AluJb SINE Alu -195 107 74 867 145 0 0 chr1 270969071 270969202 -11224462 + FRAM SINE Alu 20 150 -26 2147 82 0 0 chr1 270970005 270970324 -11223340 - AluY SINE Alu 0 319 1 1497 191 3 7 chr1 270970324 270970617 -11223047 - AluJo SINE Alu -10 302 11 248 75 0 25 chr1 270971169 270971209 -11222455 + (GGA)n Simple_repeat Simple_repeat 3 41 0 368 299 20 54 chr1 270971286 270971433 -11222231 - MIR3 SINE MIR -23 185 44 1695 168 3 3 chr1 270971953 270972245 -11221419 + AluJo SINE Alu 1 292 -20 29 28 0 0 chr1 270972251 270972287 -11221377 + AT_rich Low_complexity Low_complexity 1 36 0 2139 108 0 16 chr1 270973096 270973410 -11220254 - AluSx SINE Alu -3 309 1 265 228 54 11 chr1 270973859 270973951 -11219713 - L1ME4a LINE L1 -71 6050 5955 201 279 16 0 chr1 270974242 270974303 -11219361 - L2 LINE L2 -2 3270 3209 207 204 0 0 chr1 270975202 270975246 -11218418 + (CA)n Simple_repeat Simple_repeat 1 44 0 1627 212 34 34 chr1 270975267 270975737 -11217927 + MLT1B LTR MaLR 1 467 0 219 300 0 10 chr1 270975737 270975837 -11217827 + (CA)n Simple_repeat Simple_repeat 1 99 0 240 289 35 78 chr1 270976427 270976539 -11217125 + MIR3 SINE MIR 46 152 -56 1094 161 0 21 chr1 270976539 270976732 -11216932 + MER5A DNA MER1_type 1 189 0 240 289 35 78 chr1 270976732 270976761 -11216903 + MIR3 SINE MIR 152 181 -27 354 348 45 29 chr1 270976784 270977022 -11216642 - MIR SINE MIR -1 261 16 239 180 281 56 chr1 270977689 270977705 -11215959 + L2 LINE L2 3205 3216 -97 2181 100 3 13 chr1 270977705 270978016 -11215648 - AluSg SINE Alu -2 308 1 239 180 281 56 chr1 270978016 270978088 -11215576 + L2 LINE L2 3216 3313 0 543 90 0 0 chr1 270978127 270978205 -11215459 + (CA)n Simple_repeat Simple_repeat 1 78 0 1769 144 0 11 chr1 270979347 270979651 -11214013 + AluJb SINE Alu 1 301 0 202 259 0 56 chr1 270979834 270979888 -11213776 + L2 LINE L2 3200 3250 -22 2383 84 0 0 chr1 270979893 270980201 -11213463 - AluSg SINE Alu -2 308 1 1674 131 27 34 chr1 270980206 270980503 -11213161 - AluJo SINE Alu -17 295 1 26 0 0 0 chr1 270981474 270981500 -11212164 + AT_rich Low_complexity Low_complexity 1 26 0 2090 103 20 3 chr1 270981701 270982001 -11211663 - AluSp SINE Alu -8 305 1 1881 135 0 30 chr1 270982195 270982498 -11211166 - AluJo SINE Alu -18 294 1 1831 164 19 87 chr1 270983239 270983655 -11210009 + MLT1B LTR MaLR 1 388 -2 2123 107 3 3 chr1 270983807 270984106 -11209558 + AluSp SINE Alu 1 299 -14 444 19 0 0 chr1 270984619 270984672 -11208992 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2136 82 0 0 chr1 270984672 270984954 -11208710 - AluY SINE Alu -29 282 1 2068 114 3 0 chr1 270984956 270985245 -11208419 - AluSx SINE Alu -22 290 1 5584 163 30 31 chr1 270985245 270986374 -11207290 - L1MC2 LINE L1 -15 6329 5199 400 352 40 0 chr1 270986591 270986716 -11206948 - L2 LINE L2 -1 3271 3142 1004 180 0 51 chr1 270986753 270986970 -11206694 + AluJo SINE Alu 85 290 -22 1337 125 106 0 chr1 270987602 270987810 -11205854 - MER30 DNA MER1_type 0 230 1 28 29 0 0 chr1 270987838 270987873 -11205791 + AT_rich Low_complexity Low_complexity 1 35 0 1495 125 0 104 chr1 270987879 270988158 -11205506 - AluJo SINE Alu -62 250 1 304 292 77 18 chr1 270988250 270988418 -11205246 - L1ME4a LINE L1 -104 6017 5840 189 154 154 51 chr1 270988590 270988668 -11204996 + MIR SINE MIR 54 139 -123 715 184 0 0 chr1 270988734 270988859 -11204805 + L1M4 LINE L1 4494 4618 -1528 887 156 42 0 chr1 270988861 270989028 -11204636 - MLT1B LTR MaLR -216 174 1 1291 159 18 4 chr1 270989036 270989262 -11204402 + L1 LINE L1 4493 4721 -1425 308 213 0 50 chr1 270990059 270990139 -11203525 + L1ME3A LINE L1 6081 6156 -14 4570 142 13 1 chr1 270990286 270990989 -11202675 - MER50 LTR ERV1 -23 711 1 2057 110 31 0 chr1 270991288 270991580 -11202084 + AluSx SINE Alu 1 301 -11 1875 162 0 9 chr1 270991657 270991792 -11201872 + AluJb SINE Alu 1 136 -176 2345 70 0 3 chr1 270991792 270992090 -11201574 + AluSg1 SINE Alu 1 297 -12 1875 162 0 9 chr1 270992090 270992269 -11201395 + AluJb SINE Alu 136 312 0 211 327 140 27 chr1 270992764 270992914 -11200750 + L2 LINE L2 2923 3089 -183 434 308 75 28 chr1 270992993 270993207 -11200457 + MIR SINE MIR 20 243 -19 325 294 186 10 chr1 270993192 270993396 -11200268 - MIR SINE MIR -3 259 20 * 2268 86 0 0 chr1 270993698 270994000 -11199664 - AluSc SINE Alu -7 302 1 1852 130 4 0 chr1 270994000 270994276 -11199388 - AluSq SINE Alu -36 277 1 316 222 28 0 chr1 270994610 270994681 -11198983 - MLT1G1 LTR MaLR -4 591 519 331 73 0 0 chr1 270994681 270994722 -11198942 - MER46A DNA MER2_type 0 236 196 726 233 6 0 chr1 270994722 270994894 -11198770 + L1PB1 LINE L1 25 197 -6666 * 11892 199 48 15 chr1 270994891 270996457 -11197207 + L1PB1 LINE L1 1392 2905 -3962 2032 104 20 3 chr1 270996457 270996754 -11196910 + AluSg SINE Alu 1 302 -8 11892 199 48 15 chr1 270996754 270999759 -11193905 + L1PB1 LINE L1 2905 5810 -1057 2312 81 0 10 chr1 270999759 271000069 -11193595 + AluSg1 SINE Alu 1 307 -2 11892 199 48 15 chr1 271000069 271000357 -11193307 + L1PB1 LINE L1 5810 6087 -780 235 0 57 0 chr1 271000357 271000392 -11193272 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 11892 199 48 15 chr1 271000392 271000415 -11193249 + L1PB1 LINE L1 6087 6108 -759 500 0 17 0 chr1 271000415 271000475 -11193189 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 11892 199 48 15 chr1 271000475 271000828 -11192836 + L1PB1 LINE L1 6108 6863 -4 1203 166 0 68 chr1 271000829 271001064 -11192600 - MER46A DNA MER2_type -17 219 1 1014 250 144 46 chr1 271001064 271001515 -11192149 - MLT1G1 LTR MaLR -116 439 1 1825 112 6 61 chr1 271001656 271001994 -11191670 + AluSg SINE Alu 1 310 0 556 275 81 60 chr1 271002087 271002183 -11191481 + L1ME4a LINE L1 5314 5407 -714 791 174 0 8 chr1 271002183 271002315 -11191349 - FLAM_C SINE Alu -2 131 1 556 275 81 60 chr1 271002315 271002550 -11191114 + L1ME4a LINE L1 5407 5669 -452 2107 103 17 0 chr1 271002550 271002851 -11190813 + AluY SINE Alu 1 306 -5 556 275 81 60 chr1 271002851 271003041 -11190623 + L1ME4a LINE L1 5669 5854 -267 369 270 72 0 chr1 271003353 271003464 -11190200 + MIR SINE MIR 63 181 -81 232 222 0 0 chr1 271004608 271004653 -11189011 - Charlie2 DNA MER1_type -2 2860 2816 548 118 129 0 chr1 271004673 271004766 -11188898 + MER57A LTR ERV1 1 105 -298 432 192 198 0 chr1 271004804 271004954 -11188710 - MLT1E3 LTR MaLR -345 309 85 1802 142 7 7 chr1 271005066 271005355 -11188309 - AluJo SINE Alu -19 293 5 432 120 67 0 chr1 271005361 271005436 -11188228 - L1MB8 LINE L1 -6 6172 6093 2921 181 43 25 chr1 271005457 271005497 -11188167 - L1MB4 LINE L1 -12 6168 6130 2164 83 7 3 chr1 271005497 271005786 -11187878 - AluSc SINE Alu -19 290 1 2921 181 43 25 chr1 271005786 271006391 -11187273 - L1MB4 LINE L1 -50 6130 5511 207 0 0 0 chr1 271006395 271006418 -11187246 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1403 168 76 2 chr1 271006423 271006823 -11186841 - L1MB4 LINE L1 -709 5469 5048 1184 238 58 41 chr1 271006827 271007171 -11186493 - L1M4c LINE L1 -5999 385 36 25 75 0 0 chr1 271007483 271007536 -11186128 + AT_rich Low_complexity Low_complexity 1 53 0 762 215 159 26 chr1 271009932 271010127 -11183537 + MIR SINE MIR 23 243 -19 588 222 32 72 chr1 271011744 271011965 -11181699 - MER58C DNA MER1_type -3 212 1 462 234 98 62 chr1 271013617 271013873 -11179791 - L2 LINE L2 -181 3091 2827 26 30 0 0 chr1 271014201 271014234 -11179430 + AT_rich Low_complexity Low_complexity 1 33 0 2172 99 10 3 chr1 271014389 271014692 -11178972 - AluSx SINE Alu -7 305 1 23 0 0 0 chr1 271014897 271014920 -11178744 + AT_rich Low_complexity Low_complexity 1 23 0 2386 62 0 13 chr1 271016427 271016733 -11176931 + AluY SINE Alu 2 303 -8 703 196 72 127 chr1 271017069 271017243 -11176421 - L1M4 LINE L1 -743 5403 5221 279 0 0 0 chr1 271017243 271017274 -11176390 + (TG)n Simple_repeat Simple_repeat 2 32 0 703 196 72 127 chr1 271017274 271017295 -11176369 - L1M4 LINE L1 -925 5221 5200 1388 189 21 7 chr1 271017295 271017575 -11176089 - AluJo SINE Alu -24 288 5 703 196 72 127 chr1 271017575 271017741 -11175923 - L1M4 LINE L1 -946 5200 5061 * 754 204 123 36 chr1 271017737 271018071 -11175593 + L1MB3 LINE L1 4151 4513 -1633 1051 151 0 6 chr1 271018106 271018278 -11175386 - AluJo SINE Alu -139 173 3 476 221 35 0 chr1 271018908 271019021 -11174643 + L1MD2 LINE L1 6233 6349 -10 4592 160 44 11 chr1 271019367 271020501 -11173163 + L1MB3 LINE L1 4944 6113 -70 1251 114 89 5 chr1 271020588 271020790 -11172874 - AluSg/x SINE Alu -8 304 86 1322 251 52 30 chr1 271020979 271021566 -11172098 - L2 LINE L2 0 3313 2714 321 174 0 0 chr1 271022623 271022692 -11170972 + (CA)n Simple_repeat Simple_repeat 2 70 0 2119 114 0 0 chr1 271022861 271023151 -11170513 - AluSx SINE Alu -22 290 1 207 200 22 0 chr1 271023230 271023275 -11170389 + (CAG)n Simple_repeat Simple_repeat 2 47 0 365 294 75 0 chr1 271023602 271023748 -11169916 + MIR3 SINE MIR 23 179 -29 208 250 135 58 chr1 271024437 271024541 -11169123 - MIR3 SINE MIR -15 193 82 258 322 17 9 chr1 271024926 271025041 -11168623 + G-rich Low_complexity Low_complexity 4 119 0 2193 91 3 0 chr1 271025799 271026096 -11167568 - AluSq SINE Alu -15 298 1 672 177 57 14 chr1 271026121 271026262 -11167402 - L1MB5 LINE L1 -290 5884 5738 1565 126 0 8 chr1 271026323 271026561 -11167103 - AluSg/x SINE Alu -4 306 71 1966 152 52 6 chr1 271026715 271027044 -11166620 - MER2 DNA MER2_type 0 344 1 305 330 119 16 chr1 271027217 271027402 -11166262 + L2 LINE L2 2893 3096 -176 240 296 102 88 chr1 271027488 271027512 -11166152 - L2 LINE L2 -3 3269 3247 1703 151 20 10 chr1 271027512 271027816 -11165848 + AluJo SINE Alu 1 307 -5 240 296 102 88 chr1 271027816 271028017 -11165647 - L2 LINE L2 -25 3247 3041 22 0 0 0 chr1 271028023 271028045 -11165619 + AT_rich Low_complexity Low_complexity 1 22 0 1724 175 3 3 chr1 271028085 271028377 -11165287 - AluJb SINE Alu -20 292 1 468 195 0 0 chr1 271028385 271028472 -11165192 - FLAM_A SINE Alu -17 125 39 2210 92 3 0 chr1 271028475 271028767 -11164897 - AluSq SINE Alu -20 293 1 1043 218 23 9 chr1 271028821 271029041 -11164623 - MER58A DNA MER1_type -1 223 1 31 44 0 0 chr1 271029110 271029155 -11164509 + AT_rich Low_complexity Low_complexity 1 45 0 2058 121 0 10 chr1 271029235 271029541 -11164123 - AluSx SINE Alu -9 303 1 2233 95 0 0 chr1 271030026 271030321 -11163343 + AluSq SINE Alu 1 295 -18 333 287 81 37 chr1 271030416 271030552 -11163112 - MIR SINE MIR -56 206 65 3483 109 24 69 chr1 271031391 271031565 -11162099 + MER4B LTR ERV1 1 181 -429 2080 106 0 0 chr1 271031565 271031849 -11161815 + AluSx SINE Alu 1 284 -28 240 35 0 0 chr1 271031853 271031882 -11161782 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3483 109 24 69 chr1 271031882 271032341 -11161323 + MER4B LTR ERV1 184 610 0 2151 94 7 3 chr1 271032743 271033041 -11160623 - AluSg SINE Alu -11 299 1 2099 100 0 0 chr1 271033857 271034171 -11159493 + AluSx SINE Alu 1 314 0 240 272 165 29 chr1 271034885 271034988 -11158676 + L2 LINE L2 3182 3298 -15 314 311 22 0 chr1 271034997 271035087 -11158577 + MIR SINE MIR 59 150 -112 488 200 96 0 chr1 271035107 271035222 -11158442 - L2 LINE L2 -1252 2062 1937 1925 128 3 3 chr1 271035224 271035521 -11158143 + AluSx SINE Alu 1 297 -15 1153 136 0 0 chr1 271035521 271035697 -11157967 + AluSg/x SINE Alu 133 308 -2 375 200 35 26 chr1 271035702 271035817 -11157847 - L2 LINE L2 -1379 1935 1820 2472 60 0 0 chr1 271036117 271036419 -11157245 + AluY SINE Alu 1 302 -9 1891 121 40 3 chr1 271036530 271036828 -11156836 + AluSg SINE Alu 1 309 -1 271 194 0 48 chr1 271037795 271037857 -11155807 + L1MC5 LINE L1 7154 7212 -749 1107 231 67 40 chr1 271037865 271038241 -11155423 + L1MC5 LINE L1 7127 7512 -449 250 257 26 26 chr1 271038322 271038435 -11155229 + L1ME3A LINE L1 5963 6075 -95 305 339 0 0 chr1 271038523 271038647 -11155017 - L2 LINE L2 -1484 1830 1707 1152 158 8 63 chr1 271038649 271038902 -11154762 - AluJo SINE Alu -5 307 69 1731 231 94 12 chr1 271039032 271039208 -11154456 + MLT1F LTR MaLR 1 161 -381 213 39 0 0 chr1 271039208 271039234 -11154430 + (TC)n Simple_repeat Simple_repeat 1 26 0 1731 231 94 12 chr1 271039234 271039556 -11154108 + MLT1F LTR MaLR 161 540 -2 309 197 30 0 chr1 271039558 271039624 -11154040 + MER112 DNA MER1_type 3 70 -190 236 309 0 0 chr1 271039629 271039697 -11153967 + (CA)n Simple_repeat Simple_repeat 1 68 0 312 250 0 85 chr1 271039699 271039863 -11153801 + MER112 DNA MER1_type 70 219 -41 1039 134 0 0 chr1 271040130 271040304 -11153360 - AluSg/x SINE Alu 0 305 132 2127 114 3 0 chr1 271040304 271040602 -11153062 - AluSp SINE Alu -14 299 1 1689 217 5 27 chr1 271040709 271041082 -11152582 + MLT1A1 LTR MaLR 1 365 0 449 283 124 9 chr1 271041239 271041472 -11152192 - L1ME3A LINE L1 -241 5929 5670 1091 131 57 87 chr1 271041885 271041937 -11151727 - MER58A DNA MER1_type -2196 224 172 1732 157 23 7 chr1 271041937 271042236 -11151428 - AluJo SINE Alu -8 304 1 1091 131 57 87 chr1 271042236 271042412 -11151252 - MER58A DNA MER1_type -2248 172 3 212 263 85 93 chr1 271042592 271042710 -11150954 - L2 LINE L2 0 3313 3197 1939 128 7 0 chr1 271042930 271043219 -11150445 - AluSx SINE Alu -1 311 21 2289 102 0 3 chr1 271043911 271044225 -11149439 + AluSq SINE Alu 1 313 0 289 360 113 0 chr1 271046369 271046519 -11147145 + MER91A DNA MER1_type 28 194 -2 2261 102 0 0 chr1 271047001 271047304 -11146360 + AluSq SINE Alu 1 303 -10 332 180 83 0 chr1 271047400 271047480 -11146184 - MIR3 SINE MIR -45 163 91 2205 94 0 3 chr1 271049021 271049320 -11144344 - AluSg SINE Alu -12 298 1 457 285 67 43 chr1 271049798 271049975 -11143689 + MIR SINE MIR 3 186 -68 355 83 0 0 chr1 271050327 271050375 -11143289 - Alu SINE Alu -253 48 1 2120 118 16 0 chr1 271051396 271051701 -11141963 + AluSx SINE Alu 1 310 -2 1697 138 11 0 chr1 271053662 271053931 -11139733 + AluJb SINE Alu 39 310 -2 3843 156 26 34 chr1 271054167 271054192 -11139472 + L1MB3 LINE L1 5449 5473 -710 1922 128 3 14 chr1 271054192 271054489 -11139175 - AluSg SINE Alu -16 294 1 3843 156 26 34 chr1 271054489 271054632 -11139032 + L1MB3 LINE L1 5473 5616 -567 1934 120 14 0 chr1 271054632 271054924 -11138740 + AluSx SINE Alu 1 296 -16 3843 156 26 34 chr1 271054924 271055486 -11138178 + L1MB3 LINE L1 5616 6174 -9 299 223 78 48 chr1 271055487 271055590 -11138074 + MIR SINE MIR 121 226 -36 969 204 16 5 chr1 271056233 271056419 -11137245 + MER58A DNA MER1_type 37 224 0 2020 125 7 3 chr1 271056772 271057076 -11136588 - AluSx SINE Alu -7 305 1 2344 89 0 0 chr1 271057082 271057386 -11136278 - AluSx SINE Alu -8 304 1 310 262 76 81 chr1 271058270 271058419 -11135245 + MIR SINE MIR 16 163 -45 235 250 59 0 chr1 271058467 271058535 -11135129 - MIR SINE MIR -6 256 185 2141 119 0 6 chr1 271058553 271058865 -11134799 - AluSx SINE Alu -2 310 1 1870 144 0 25 chr1 271059371 271059691 -11133973 + AluSx SINE Alu 1 312 0 191 61 30 0 chr1 271059789 271059822 -11133842 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 573 298 78 23 chr1 271059824 271060133 -11133531 + L1ME4a LINE L1 5608 5933 -188 1190 167 14 0 chr1 271060139 271060354 -11133310 + AluJb SINE Alu 87 304 -8 958 222 40 22 chr1 271060369 271060507 -11133157 + L1MC4 LINE L1 7756 7890 -152 204 40 0 0 chr1 271060507 271060532 -11133132 + (TA)n Simple_repeat Simple_repeat 1 25 0 958 222 40 22 chr1 271060532 271060668 -11132996 + L1MC4 LINE L1 7890 8035 -7 1997 135 0 0 chr1 271060719 271061016 -11132648 + AluSq SINE Alu 1 297 -16 370 300 35 82 chr1 271061017 271061187 -11132477 + L1ME4a LINE L1 5891 6052 -69 335 282 17 42 chr1 271061826 271061946 -11131718 + MIR SINE MIR 33 148 -62 1792 167 14 38 chr1 271062192 271062539 -11131125 + MER58B DNA MER1_type 1 339 -2 2267 103 0 0 chr1 271062931 271063242 -11130422 - AluY SINE Alu 0 311 1 2086 99 7 0 chr1 271064854 271065137 -11128527 + AluSx SINE Alu 5 289 -23 2738 164 31 43 chr1 271065729 271065963 -11127701 + L1MB7 LINE L1 5591 5826 -358 2282 105 0 3 chr1 271065963 271066277 -11127387 + AluSq SINE Alu 1 313 0 2738 164 31 43 chr1 271066277 271066629 -11127035 + L1MB7 LINE L1 5826 6170 -14 6004 12 0 1 chr1 271066817 271067486 -11126178 - L1PA2 LINE L1 0 6155 5488 2443 125 89 0 chr1 271068390 271068782 -11124882 + MSTC LTR MaLR 1 427 -1 2038 142 0 0 chr1 271069200 271069496 -11124168 + AluSx SINE Alu 1 296 -16 29 28 0 0 chr1 271070465 271070501 -11123163 + AT_rich Low_complexity Low_complexity 1 36 0 * 362 146 73 30 chr1 271070470 271070635 -11123029 + (TA)n Simple_repeat Simple_repeat 2 173 0 312 258 45 22 chr1 271070734 271070823 -11122841 + L1MC4 LINE L1 6613 6703 -1339 * 383 310 134 22 chr1 271070796 271071028 -11122636 - L1ME4a LINE L1 -157 5964 5707 21 36 0 0 chr1 271071040 271071068 -11122596 + AT_rich Low_complexity Low_complexity 1 28 0 339 106 0 30 chr1 271071068 271071134 -11122530 - L1MB4 LINE L1 0 6180 6117 383 175 0 25 chr1 271071142 271071222 -11122442 - AluYb8 SINE Alu -113 195 118 2014 126 0 3 chr1 271072487 271072789 -11120875 - AluSq SINE Alu -12 301 1 2228 99 0 0 chr1 271072896 271073190 -11120474 - AluSc SINE Alu -15 294 1 3624 211 55 10 chr1 271074523 271075294 -11118370 + MER21B LTR ERV1 1 805 -58 2407 74 0 0 chr1 271075340 271075651 -11118013 + AluY SINE Alu 1 311 0 1775 184 85 31 chr1 271076017 271076430 -11117234 - MER63B DNA MER1_type 0 436 2 2218 107 0 25 chr1 271076740 271077059 -11116605 + AluSx SINE Alu 1 311 -1 473 300 67 11 chr1 271077934 271078114 -11115550 + MIR SINE MIR 21 210 -52 394 117 0 17 chr1 271078122 271078182 -11115482 + AluJ/FLAM SINE Alu 2 60 -242 1094 131 0 0 chr1 271078796 271078964 -11114700 + AluSg/x SINE Alu 145 312 0 333 171 216 0 chr1 271078976 271079064 -11114600 + MER103 DNA DNA 43 149 -17 2182 108 3 0 chr1 271079568 271079873 -11113791 + AluSx SINE Alu 3 308 -4 2246 78 0 7 chr1 271079873 271080192 -11113472 + AluY SINE Alu 1 317 0 1302 146 0 13 chr1 271081102 271081328 -11112336 + AluJb SINE Alu 87 309 -3 577 272 112 69 chr1 271081486 271081579 -11112085 - MIR SINE MIR -1 261 173 2135 107 7 0 chr1 271081579 271081878 -11111786 + AluSg SINE Alu 1 301 -9 577 272 112 69 chr1 271081878 271082016 -11111648 - MIR SINE MIR -89 173 20 2159 102 7 0 chr1 271082093 271082388 -11111276 + AluSq SINE Alu 1 297 -16 1810 144 6 26 chr1 271082617 271082929 -11110735 + AluSx SINE Alu 1 306 -6 324 102 0 0 chr1 271083068 271083117 -11110547 + (CCCCCT)n Simple_repeat Simple_repeat 4 52 0 211 329 0 14 chr1 271084273 271084343 -11109321 + L2 LINE L2 2424 2492 -822 4097 172 49 20 chr1 271084366 271084717 -11108947 + MER6 DNA MER2_type 1 340 -525 243 0 0 0 chr1 271084717 271084744 -11108920 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 4097 172 49 20 chr1 271084744 271085233 -11108431 + MER6 DNA MER2_type 340 865 0 259 289 104 50 chr1 271085363 271085564 -11108100 + L2 LINE L2 3025 3236 -36 1561 192 77 88 chr1 271085761 271085995 -11107669 + L1MC5 LINE L1 7299 7534 -427 1961 134 0 0 chr1 271085995 271086287 -11107377 + AluSq SINE Alu 1 292 -21 1561 192 77 88 chr1 271086287 271086452 -11107212 + L1MC5 LINE L1 7534 7699 -262 2117 116 0 19 chr1 271086452 271086763 -11106901 - AluSx SINE Alu -7 305 1 1561 192 77 88 chr1 271086763 271086844 -11106820 + L1MC5 LINE L1 7699 7779 -182 2304 60 0 0 chr1 271086844 271087152 -11106512 + AluY SINE Alu 1 308 0 1561 192 77 88 chr1 271087152 271087303 -11106361 + L1MC5 LINE L1 7779 7926 -35 1036 136 0 0 chr1 271087346 271087501 -11106163 + AluSg/x SINE Alu 153 307 -5 622 180 31 0 chr1 271087628 271087756 -11105908 - L1MA9 LINE L1 0 6312 6181 1733 213 6 3 chr1 271087767 271088124 -11105540 + L1 LINE L1 4795 5152 -994 2092 101 29 29 chr1 271088159 271088507 -11105157 - L1MA4 LINE L1 -1 6299 5952 2087 103 0 0 chr1 271088805 271089086 -11104578 + AluSx SINE Alu 8 288 -24 1532 120 142 8 chr1 271089269 271089536 -11104128 + AluSg1 SINE Alu 1 303 -6 328 155 28 0 chr1 271089545 271089616 -11104048 + A-rich Low_complexity Low_complexity 3 75 0 339 232 45 103 chr1 271090849 271091004 -11102660 - MIR3 SINE MIR -47 161 16 228 309 62 49 chr1 271091249 271091411 -11102253 - MIR SINE MIR -50 212 49 4180 80 15 9 chr1 271091515 271091641 -11102023 - MER41A LTR ERV1 -2 552 428 2417 73 0 0 chr1 271091641 271091944 -11101720 + AluSc SINE Alu 1 303 -6 4180 80 15 9 chr1 271091944 271092366 -11101298 - MER41A LTR ERV1 -126 428 1 558 111 11 11 chr1 271092498 271092588 -11101076 + HY4 scRNA scRNA 1 90 -3 539 263 23 85 chr1 271092790 271093270 -11100394 + L1MC4 LINE L1 7000 7456 -586 1471 121 4 26 chr1 271093275 271093507 -11100157 - AluSg/x SINE Alu -5 307 81 2247 139 21 10 chr1 271093543 271093932 -11099732 + L1M4 LINE L1 5287 5679 -505 353 248 14 43 chr1 271093991 271094132 -11099532 - L1MC5 LINE L1 -384 7577 7441 2339 85 3 0 chr1 271094174 271094481 -11099183 + AluSx SINE Alu 1 308 -4 1244 118 101 155 chr1 271094489 271094695 -11098969 + Charlie4a DNA MER1_type 95 310 -1651 2219 109 0 0 chr1 271094695 271094997 -11098667 + AluSg SINE Alu 1 302 -8 1244 118 101 155 chr1 271094997 271095011 -11098653 + Charlie4a DNA MER1_type 310 323 -1638 1961 131 0 0 chr1 271095011 271095328 -11098336 + AluSx SINE Alu 1 317 0 1244 118 101 155 chr1 271095328 271095462 -11098202 + Charlie4a DNA MER1_type 323 429 -1532 889 158 6 18 chr1 271095462 271095626 -11098038 + FRAM SINE Alu 1 162 -4 1244 118 101 155 chr1 271095626 271095682 -11097982 + Charlie4a DNA MER1_type 429 486 -22 25 0 0 0 chr1 271096615 271096640 -11097024 + GC_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr1 271097052 271097087 -11096577 + GC_rich Low_complexity Low_complexity 1 35 0 542 329 97 9 chr1 271098343 271098559 -11095105 - MIR SINE MIR -21 241 7 180 297 0 14 chr1 271098909 271098983 -11094681 + L2 LINE L2 2906 2978 -294 468 261 164 19 chr1 271099090 271099297 -11094367 + MIR SINE MIR 15 251 -11 338 287 96 43 chr1 271099348 271099463 -11094201 - L2 LINE L2 -16 3256 3136 327 324 147 6 chr1 271099537 271099725 -11093939 - MIR3 SINE MIR -48 214 3 2095 114 7 0 chr1 271100439 271100746 -11092918 - AluSx SINE Alu -3 309 1 2202 52 0 74 chr1 271100974 271101299 -11092365 - AluY SINE Alu -10 301 1 2292 42 0 7 chr1 271101361 271101675 -11091989 + AluY SINE Alu 1 312 0 340 175 42 140 chr1 271101942 271102085 -11091579 - L1MC4 LINE L1 0 8042 7914 192 158 0 0 chr1 271102112 271102150 -11091514 + (CA)n Simple_repeat Simple_repeat 1 38 0 3196 202 46 19 chr1 271102158 271102491 -11091173 - L1MC4 LINE L1 -126 7916 7593 941 190 25 0 chr1 271102491 271102654 -11091010 - FAM SINE Alu -8 167 1 3196 202 46 19 chr1 271102654 271103058 -11090606 - L1MC4 LINE L1 -449 7593 7159 4935 139 12 41 chr1 271103080 271103487 -11090177 - L1MB3 LINE L1 -4 6179 5762 1821 119 25 75 chr1 271103487 271103806 -11089858 + AluJb SINE Alu 1 303 -9 4935 139 12 41 chr1 271103806 271104309 -11089355 - L1MB3 LINE L1 -421 5762 5295 2149 104 3 0 chr1 271104356 271104654 -11089010 + AluSx SINE Alu 6 304 -8 2083 114 0 10 chr1 271104662 271105030 -11088634 + AluSg SINE Alu 7 371 0 1468 161 7 49 chr1 271105102 271105388 -11088276 + AluJo SINE Alu 14 287 -25 793 219 100 41 chr1 271105399 271105768 -11087896 - L1MC4 LINE L1 -75 7967 7577 2123 117 0 0 chr1 271105783 271106081 -11087583 - AluSg SINE Alu -12 298 1 1206 242 27 7 chr1 271106081 271106379 -11087285 - L1MC4 LINE L1 -406 7636 7333 1862 103 9 69 chr1 271106671 271106991 -11086673 - AluSp SINE Alu -12 301 1 888 278 36 99 chr1 271107109 271107340 -11086324 - L2 LINE L2 0 3313 3128 2207 95 3 3 chr1 271107340 271107644 -11086020 + AluSx SINE Alu 1 304 -8 888 278 36 99 chr1 271107644 271107905 -11085759 - L2 LINE L2 -185 3128 2852 997 92 35 203 chr1 271108247 271108371 -11085293 - Tigger1 DNA MER2_type 0 2418 2275 6416 82 2 25 chr1 271108371 271108640 -11085024 + L1PA14 LINE L1 5030 5304 -857 1899 147 0 0 chr1 271108640 271108925 -11084739 + AluSx SINE Alu 1 285 -27 243 0 0 0 chr1 271108925 271108952 -11084712 + (CA)n Simple_repeat Simple_repeat 2 28 0 6416 82 2 25 chr1 271108952 271109031 -11084633 + L1PA14 LINE L1 5303 5382 -779 2324 97 3 0 chr1 271109031 271109339 -11084325 + AluSp SINE Alu 1 309 -4 2492 56 0 3 chr1 271109339 271109645 -11084019 + AluY SINE Alu 1 305 -6 6416 82 2 25 chr1 271109645 271110433 -11083231 + L1PA14 LINE L1 5380 6148 -13 997 92 35 203 chr1 271110433 271110457 -11083207 - Tigger1 DNA MER2_type -143 2275 2249 2130 108 20 0 chr1 271110457 271110763 -11082901 + AluSx SINE Alu 1 312 0 729 196 0 8 chr1 271110773 271110906 -11082758 + FLAM_C SINE Alu 2 133 0 997 92 35 203 chr1 271110906 271111006 -11082658 - Tigger1 DNA MER2_type -179 2239 2202 819 210 0 6 chr1 271110995 271111152 -11082512 - Tigger1 DNA MER2_type -2261 157 2 * 249 366 0 9 chr1 271111443 271111555 -11082109 + CT-rich Low_complexity Low_complexity 3 113 0 1837 151 10 3 chr1 271111969 271112273 -11081391 + AluJb SINE Alu 1 306 -6 779 162 0 0 chr1 271112657 271112774 -11080890 - FLAM_C SINE Alu -24 119 3 372 350 49 6 chr1 271113897 271114052 -11079612 - MIR SINE MIR -58 204 40 2111 116 0 0 chr1 271114052 271114346 -11079318 - AluSx SINE Alu -12 300 7 285 183 61 24 chr1 271114570 271114652 -11079012 - L1ME LINE L1 -319 5802 5718 2238 90 0 7 chr1 271114680 271114981 -11078683 - AluSq SINE Alu -10 303 5 305 185 31 0 chr1 271115062 271115127 -11078537 - L1ME LINE L1 -477 5644 5578 359 242 44 11 chr1 271115408 271115499 -11078165 - MIR SINE MIR -108 154 61 382 190 0 38 chr1 271116321 271116400 -11077264 + MLT1J LTR MaLR 234 309 -202 1530 139 10 47 chr1 271116593 271116894 -11076770 + AluJo SINE Alu 1 290 -22 948 174 6 6 chr1 271116910 271117121 -11076543 + FRAM SINE Alu 3 166 0 811 276 79 15 chr1 271117201 271117531 -11076133 - L2 LINE L2 -131 3182 2832 350 205 33 13 chr1 271117531 271117682 -11075982 + (TG)n Simple_repeat Simple_repeat 1 154 0 286 225 29 7 chr1 271117701 271117839 -11075825 + (TG)n Simple_repeat Simple_repeat 1 141 0 356 125 34 11 chr1 271117895 271117983 -11075681 + (TG)n Simple_repeat Simple_repeat 2 91 0 232 214 56 0 chr1 271119057 271119146 -11074518 + (TA)n Simple_repeat Simple_repeat 1 94 0 1772 159 60 70 chr1 271119553 271119800 -11073864 - MSTD LTR MaLR -1 395 152 1849 152 7 0 chr1 271119800 271120102 -11073562 - AluSx SINE Alu -8 304 1 1772 159 60 70 chr1 271120102 271120251 -11073413 - MSTD LTR MaLR -244 152 3 2335 50 0 14 chr1 271120643 271120922 -11072742 - AluY SINE Alu -7 304 30 184 233 123 41 chr1 271120972 271121045 -11072619 + L2 LINE L2 3220 3298 -15 2326 91 3 10 chr1 271121049 271121357 -11072307 + AluSq SINE Alu 1 306 -7 758 167 0 0 chr1 271121574 271121694 -11071970 + AluJb SINE Alu 174 293 -19 2283 89 0 17 chr1 271121819 271122145 -11071519 - AluSx SINE Alu 0 321 1 1144 137 23 0 chr1 271122225 271122400 -11071264 + AluSg/x SINE Alu 132 310 -2 2430 78 0 3 chr1 271122929 271123235 -11070429 - AluY SINE Alu -6 305 1 311 185 77 0 chr1 271123235 271123300 -11070364 + MIR SINE MIR 186 255 -7 363 331 7 7 chr1 271123536 271123672 -11069992 - MLT1J LTR MaLR -258 253 118 260 237 102 0 chr1 271123768 271123827 -11069837 - MLT1J LTR MaLR -446 65 1 2205 120 3 0 chr1 271123984 271124283 -11069381 - AluSx SINE Alu -12 300 1 338 230 24 50 chr1 271124288 271124384 -11069280 - L1ME LINE L1 -379 5788 5696 2317 118 0 0 chr1 271124384 271124681 -11068983 - AluSx SINE Alu -15 297 1 338 230 24 50 chr1 271124681 271124728 -11068936 - L1ME LINE L1 -471 5696 5649 223 286 107 0 chr1 271124971 271125055 -11068609 - MIR SINE MIR -97 165 73 2285 107 3 3 chr1 271125062 271125370 -11068294 - AluSx SINE Alu -4 308 1 3143 184 57 90 chr1 271125392 271126090 -11067574 - L1ME1 LINE L1 -5 6161 5442 1706 153 0 68 chr1 271126090 271126416 -11067248 - AluJo SINE Alu 0 312 9 3143 184 57 90 chr1 271126416 271126432 -11067232 - L1ME1 LINE L1 -724 5442 5427 2168 115 26 7 chr1 271126432 271126737 -11066927 - AluSx SINE Alu -1 311 1 3143 184 57 90 chr1 271126737 271127003 -11066661 - L1ME1 LINE L1 -739 5427 5187 1862 141 21 17 chr1 271127003 271127293 -11066371 - AluJo SINE Alu -21 291 1 3143 184 57 90 chr1 271127293 271127381 -11066283 - L1ME1 LINE L1 -979 5187 5098 2438 206 16 33 chr1 271127382 271127932 -11065732 + MER74A LTR ERVL 1 541 -17 1349 204 48 60 chr1 271127951 271128016 -11065648 - L1ME1 LINE L1 -1045 5101 5037 906 222 82 0 chr1 271128016 271128223 -11065441 + MER58A DNA MER1_type 1 224 0 1349 204 48 60 chr1 271128223 271128554 -11065110 - L1ME1 LINE L1 -1109 5037 4710 2899 76 0 0 chr1 271128600 271128970 -11064694 - LTR10A LTR ERV1 -62 547 178 628 226 54 6 chr1 271128982 271129150 -11064514 - LTR10A LTR ERV1 -357 252 77 1023 261 49 0 chr1 271129308 271129534 -11064130 - MER8 DNA MER2_type 0 239 3 2449 54 7 0 chr1 271129614 271129909 -11063755 + AluY SINE Alu 1 297 -14 766 264 34 10 chr1 271129913 271130121 -11063543 + MIR SINE MIR 28 240 -22 294 235 0 0 chr1 271131125 271131206 -11062458 + (TG)n Simple_repeat Simple_repeat 1 81 0 2354 116 0 0 chr1 271131932 271132242 -11061422 + AluSx SINE Alu 1 310 -2 22 94 0 0 chr1 271132409 271132473 -11061191 + AT_rich Low_complexity Low_complexity 1 64 0 2080 129 13 66 chr1 271132779 271132868 -11060796 - MER46B DNA MER2_type -2495 236 144 2127 132 10 0 chr1 271132868 271133171 -11060493 + AluSq SINE Alu 1 306 -7 2080 129 13 66 chr1 271133171 271133462 -11060202 - MER46B DNA MER2_type -2587 144 1 2325 88 20 3 chr1 271133937 271134232 -11059432 + AluSq SINE Alu 1 300 -13 1162 121 49 81 chr1 271134856 271135079 -11058585 - AluJo SINE Alu -9 303 88 504 237 128 41 chr1 271135420 271135639 -11058025 - L1MB8 LINE L1 0 6178 5941 2827 70 0 11 chr1 271136054 271136413 -11057251 + THE1A LTR MaLR 1 355 0 11897 88 14 0 chr1 271136413 271137972 -11055692 + THE1A-int LTR MaLR 1 1580 0 2817 81 0 6 chr1 271137972 271138329 -11055335 + THE1A LTR MaLR 1 355 0 22 0 0 0 chr1 271139428 271139450 -11054214 + AT_rich Low_complexity Low_complexity 1 22 0 1642 176 0 56 chr1 271139451 271139770 -11053894 + AluJo SINE Alu 1 301 -11 2056 100 0 47 chr1 271139772 271140091 -11053573 + AluSx SINE Alu 1 304 -8 365 274 0 19 chr1 271140095 271140201 -11053463 - L1MEc LINE L1 -6254 142 39 266 0 29 0 chr1 271140209 271140243 -11053421 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2038 115 4 0 chr1 271140243 271140522 -11053142 - AluSx SINE Alu -32 280 1 908 135 0 0 chr1 271140525 271140658 -11053006 - AluJo/FLAM SINE Alu -169 133 1 1713 154 10 24 chr1 271140822 271141120 -11052544 + AluJo SINE Alu 5 298 -14 2362 94 7 0 chr1 271141430 271141737 -11051927 - AluSq SINE Alu -4 309 1 886 116 8 0 chr1 271141970 271142091 -11051573 - FLAM_C SINE Alu -11 122 1 1174 254 0 3 chr1 271142097 271142396 -11051268 - L1M4 LINE L1 -1393 4753 4456 2117 147 77 54 chr1 271142407 271142557 -11051107 + LTR47A LTR ERVL 1 146 -306 2337 82 16 10 chr1 271142557 271142863 -11050801 + AluSp SINE Alu 1 308 -5 2117 147 77 54 chr1 271142863 271143069 -11050595 + LTR47A LTR ERVL 146 371 -81 4988 78 38 24 chr1 271143069 271143137 -11050527 - LTR8 LTR ERV1 0 691 625 2042 131 3 3 chr1 271143137 271143428 -11050236 + AluSx SINE Alu 1 291 -21 4988 78 38 24 chr1 271143428 271144040 -11049624 - LTR8 LTR ERV1 -66 625 1 2117 147 77 54 chr1 271144040 271144124 -11049540 + LTR47A LTR ERVL 371 452 0 6659 210 24 43 chr1 271144128 271144568 -11049096 - L1M4 LINE L1 -1701 4445 3998 2387 83 0 7 chr1 271144568 271144870 -11048794 - AluSq SINE Alu -13 300 1 6659 210 24 43 chr1 271144870 271144939 -11048725 - L1M4 LINE L1 -2148 3998 3929 2139 124 3 13 chr1 271144939 271145254 -11048410 - AluSx SINE Alu 0 312 1 6659 210 24 43 chr1 271145254 271145913 -11047751 - L1M4 LINE L1 -2217 3929 3259 2547 69 0 0 chr1 271145913 271146216 -11047448 - AluY SINE Alu -8 303 1 2216 113 0 0 chr1 271146216 271146507 -11047157 - AluSx SINE Alu -21 291 1 6659 210 24 43 chr1 271146507 271147237 -11046427 - L1M4 LINE L1 -2885 3261 2581 386 83 0 17 chr1 271147248 271147308 -11046356 + (TCCC)n Simple_repeat Simple_repeat 2 60 0 1174 150 135 5 chr1 271147308 271147508 -11046156 - AluJo SINE Alu -24 288 63 1606 238 20 0 chr1 271147510 271147910 -11045754 - L1M4 LINE L1 -3603 2543 2136 6575 49 5 12 chr1 271147911 271148708 -11044956 - SVA Other Other 0 1386 596 864 92 0 0 chr1 271148823 271148932 -11044732 - AluJb SINE Alu -201 111 3 922 154 39 25 chr1 271148933 271149142 -11044522 - L1MB8 LINE L1 -303 5818 5615 2146 120 0 0 chr1 271149145 271149455 -11044209 + AluSx SINE Alu 1 310 0 3872 166 31 33 chr1 271149472 271150366 -11043298 + L1MCc LINE L1 1436 2527 -4595 2122 134 7 0 chr1 271150366 271150665 -11042999 + AluSx SINE Alu 1 301 -11 3872 166 31 33 chr1 271150665 271150683 -11042981 + L1MCc LINE L1 2527 2544 -4578 1367 185 0 0 chr1 271150686 271150913 -11042751 - AluJo SINE Alu -2 310 84 2417 106 0 0 chr1 271150915 271151227 -11042437 - AluSx SINE Alu 0 312 1 2923 171 43 1 chr1 271151230 271152092 -11041572 + L1MCc LINE L1 2447 3338 -3603 1153 155 135 5 chr1 271152094 271152294 -11041370 + AluJo SINE Alu 63 288 -24 386 83 0 17 chr1 271152294 271152354 -11041310 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 6715 209 24 43 chr1 271152365 271153095 -11040569 + L1MCc LINE L1 3376 4119 -2822 2201 117 0 0 chr1 271153095 271153386 -11040278 + AluSx SINE Alu 1 291 -21 2535 67 0 0 chr1 271153386 271153686 -11039978 + AluY SINE Alu 1 300 -11 6715 209 24 43 chr1 271153686 271154345 -11039319 + L1MCc LINE L1 4118 4788 -2153 2139 124 3 13 chr1 271154345 271154660 -11039004 + AluSx SINE Alu 1 312 0 6715 209 24 43 chr1 271154660 271154729 -11038935 + L1MCc LINE L1 4788 4857 -2084 2374 86 0 7 chr1 271154729 271155031 -11038633 + AluSq SINE Alu 1 300 -13 6715 209 24 43 chr1 271155031 271155471 -11038193 + L1MCc LINE L1 4857 5240 -1701 2149 143 77 54 chr1 271155475 271155559 -11038105 - LTR47A LTR ERVL 0 452 371 4979 79 38 24 chr1 271155559 271156171 -11037493 + LTR8 LTR ERV1 1 625 -66 2042 131 3 3 chr1 271156171 271156462 -11037202 - AluSx SINE Alu -21 291 1 4979 79 38 24 chr1 271156462 271156530 -11037134 + LTR8 LTR ERV1 625 691 0 2149 143 77 54 chr1 271156530 271156736 -11036928 - LTR47A LTR ERVL -81 371 146 2362 88 16 0 chr1 271156736 271157041 -11036623 - AluSp SINE Alu -3 310 1 2149 143 77 54 chr1 271157041 271157191 -11036473 - LTR47A LTR ERVL -306 146 1 1161 258 0 3 chr1 271157202 271157501 -11036163 + L1MCc LINE L1 5251 5548 -1393 886 116 8 0 chr1 271157507 271157628 -11036036 + FLAM_C SINE Alu 1 122 -11 2334 89 10 0 chr1 271157861 271158165 -11035499 + AluSp SINE Alu 1 307 -6 1760 156 10 14 chr1 271158475 271158770 -11034894 - AluJo SINE Alu -14 298 5 895 143 0 0 chr1 271158936 271159069 -11034595 + AluJo/FLAM SINE Alu 1 133 -169 2064 108 4 0 chr1 271159072 271159351 -11034313 + AluSx SINE Alu 1 280 -32 221 0 35 0 chr1 271159351 271159380 -11034284 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 3474 262 69 26 chr1 271159388 271159497 -11034167 + L1ME1 LINE L1 765 868 -6254 2296 91 0 23 chr1 271159497 271159806 -11033858 - AluSx SINE Alu -10 302 1 3474 262 69 26 chr1 271159806 271160964 -11032700 + L1ME1 LINE L1 868 2086 -5036 927 111 7 30 chr1 271160997 271161132 -11032532 + AluJo SINE Alu 4 135 -177 1869 184 10 0 chr1 271161140 271161449 -11032215 + AluJb SINE Alu 1 312 0 3446 225 44 6 chr1 271161450 271162338 -11031326 + L1ME1 LINE L1 4671 5592 -1349 1572 139 158 0 chr1 271162451 271162717 -11030947 - AluSx SINE Alu -4 308 1 921 136 29 0 chr1 271162718 271162858 -11030806 - MSTA LTR MaLR -40 388 245 596 153 0 0 chr1 271162908 271162993 -11030671 + AluJ/FLAM SINE Alu 2 86 -226 189 0 0 0 chr1 271163014 271163035 -11030629 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 865 116 0 0 chr1 271163042 271163154 -11030510 - FLAM_C SINE Alu -19 124 13 1022 131 187 0 chr1 271163154 271163352 -11030312 - MSTA LTR MaLR -193 235 1 247 204 0 0 chr1 271163369 271163423 -11030241 + L1ME1 LINE L1 5576 5629 -1312 723 146 8 62 chr1 271163434 271163564 -11030100 + FLAM_C SINE Alu 2 124 -19 243 0 0 0 chr1 271163567 271163594 -11030070 + (TA)n Simple_repeat Simple_repeat 1 27 0 606 179 145 8 chr1 271163600 271163717 -11029947 - FLAM_C SINE Alu 0 133 1 2092 226 31 12 chr1 271163731 271164385 -11029279 + L1ME1 LINE L1 5619 6284 -743 753 182 15 8 chr1 271164385 271164517 -11029147 + FRAM SINE Alu 24 156 -20 2182 257 34 25 chr1 271164522 271164971 -11028693 + L1ME1 LINE L1 6277 6735 -226 2138 91 3 55 chr1 271164971 271165313 -11028351 + AluSx SINE Alu 1 312 0 2182 257 34 25 chr1 271165313 271165535 -11028129 + L1ME1 LINE L1 6735 6954 -7 189 0 0 0 chr1 271165546 271165567 -11028097 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 504 258 97 32 chr1 271165611 271165754 -11027910 + LTR33A LTR ERVL 293 456 -67 2063 152 0 3 chr1 271165754 271166063 -11027601 + AluJb SINE Alu 1 308 -4 504 258 97 32 chr1 271166063 271166136 -11027528 + LTR33A LTR ERVL 456 523 0 1648 187 7 23 chr1 271166258 271166568 -11027096 - AluJo SINE Alu -7 305 1 1282 213 51 67 chr1 271166641 271166729 -11026935 - MLT1A1 LTR MaLR 0 365 277 2252 124 48 25 chr1 271166729 271167085 -11026579 + THE1B LTR MaLR 1 364 0 1282 213 51 67 chr1 271167085 271167367 -11026297 - MLT1A1 LTR MaLR -88 277 1 4033 140 29 0 chr1 271167540 271168196 -11025468 + L1P LINE L1 2462 3136 -3010 1405 122 14 75 chr1 271168220 271168430 -11025234 - LTR54 LTR ERV1 0 510 289 2001 141 10 7 chr1 271168430 271168736 -11024928 + AluSq SINE Alu 1 307 -6 1405 122 14 75 chr1 271168736 271168757 -11024907 - LTR54 LTR ERV1 -221 289 295 1804 194 111 3 chr1 271168757 271169143 -11024521 + MSTA LTR MaLR 1 428 0 1405 122 14 75 chr1 271169143 271169188 -11024476 - LTR54 LTR ERV1 -214 296 250 682 99 30 0 chr1 271169190 271169291 -11024373 + MSTB1 LTR MaLR 325 428 -4 1523 201 29 127 chr1 271169295 271169494 -11024170 - Charlie1a DNA MER1_type -2281 480 263 2245 108 0 0 chr1 271169494 271169799 -11023865 - AluSq SINE Alu -8 305 1 1523 201 29 127 chr1 271169799 271169835 -11023829 - Charlie1a DNA MER1_type -2498 263 225 183 42 0 0 chr1 271169835 271169859 -11023805 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1523 201 29 127 chr1 271169859 271170110 -11023554 - Charlie1a DNA MER1_type -2536 225 41 24 32 0 0 chr1 271170600 271170631 -11023033 + AT_rich Low_complexity Low_complexity 1 31 0 336 71 0 0 chr1 271170631 271170673 -11022991 - MER4E LTR ERV1 -72 694 653 2504 93 0 0 chr1 271170791 271171103 -11022561 + AluSq SINE Alu 1 312 -1 3749 160 24 12 chr1 271171497 271172160 -11021504 - LTR51 LTR ERV1 0 671 1 458 246 9 9 chr1 271172162 271172276 -11021388 - MIR SINE MIR -111 151 38 2359 80 7 0 chr1 271172902 271173201 -11020463 - AluSg SINE Alu -9 301 1 263 191 119 0 chr1 271173326 271173410 -11020254 - MIR SINE MIR -70 138 45 1733 174 0 35 chr1 271173567 271173740 -11019924 - AluJo SINE Alu -6 306 147 2344 98 0 0 chr1 271173740 271174035 -11019629 - AluSx SINE Alu -17 295 1 1733 174 0 35 chr1 271174035 271174178 -11019486 - AluJo SINE Alu -165 147 1 1138 158 37 19 chr1 271174178 271174393 -11019271 + LTR54 LTR ERV1 1 219 -291 3355 125 8 25 chr1 271174464 271174873 -11018791 + MER41E LTR ERV1 3 403 -109 2325 76 28 0 chr1 271174873 271175163 -11018501 - AluSc SINE Alu -11 298 1 3355 125 8 25 chr1 271175163 271175272 -11018392 + MER41E LTR ERV1 403 512 0 271 73 0 24 chr1 271175273 271175303 -11018361 + LTR54 LTR ERV1 206 234 -276 806 137 34 20 chr1 271175303 271175449 -11018215 - LTR23 LTR ERV1 0 437 290 781 181 14 0 chr1 271175450 271175588 -11018076 - FRAM SINE Alu -16 160 21 1695 124 52 24 chr1 271175603 271175894 -11017770 - LTR23 LTR ERV1 -138 299 1 731 113 0 48 chr1 271175904 271176028 -11017636 + LTR54 LTR ERV1 300 417 -93 1832 90 7 70 chr1 271176036 271176197 -11017467 + AluSx SINE Alu 11 146 -166 4786 53 66 96 chr1 271176197 271176473 -11017191 + MER4E LTR ERV1 1 284 -482 2113 119 24 0 chr1 271176473 271176768 -11016896 - AluSx SINE Alu -7 305 4 4786 53 66 96 chr1 271176768 271177281 -11016383 + MER4E LTR ERV1 284 766 0 1832 90 7 70 chr1 271177281 271177418 -11016246 + AluSx SINE Alu 146 290 -22 871 155 0 0 chr1 271177432 271177561 -11016103 + FLAM_A SINE Alu 12 140 -2 21 0 0 0 chr1 271177605 271177626 -11016038 + AT_rich Low_complexity Low_complexity 1 21 0 360 311 37 67 chr1 271178858 271179070 -11014594 - L1MEd LINE L1 -5012 1107 905 2180 123 7 0 chr1 271179070 271179378 -11014286 - AluSx SINE Alu -2 310 1 360 311 37 67 chr1 271179378 271179464 -11014200 - L1MEd LINE L1 -5214 905 818 2391 93 6 0 chr1 271179518 271179829 -11013835 + AluSp SINE Alu 1 313 0 2410 86 0 3 chr1 271180005 271180307 -11013357 - AluSq SINE Alu -12 301 1 1660 172 0 56 chr1 271180309 271180628 -11013036 - AluJo SINE Alu -11 301 1 22 0 0 0 chr1 271180629 271180651 -11013013 + AT_rich Low_complexity Low_complexity 1 22 0 861 163 21 0 chr1 271181834 271181975 -11011689 - AluJb SINE Alu -21 291 148 293 197 14 0 chr1 271181984 271182055 -11011609 + (TA)n Simple_repeat Simple_repeat 2 73 0 642 121 61 68 chr1 271182055 271182187 -11011477 - AluSg SINE Alu -178 132 2 2248 105 0 19 chr1 271182348 271182663 -11011001 - AluSq SINE Alu -2 311 3 198 241 0 19 chr1 271183004 271183058 -11010606 - L2 LINE L2 -32 3240 3188 2246 112 0 10 chr1 271184069 271184373 -11009291 - AluSx SINE Alu -11 301 1 2290 109 6 10 chr1 271184388 271184701 -11008963 - AluSx SINE Alu 0 312 1 2177 106 0 10 chr1 271185390 271185683 -11007981 + AluSx SINE Alu 1 290 -22 510 234 8 24 chr1 271185739 271185863 -11007801 + L2 LINE L2 3188 3309 -4 5494 146 35 18 chr1 271186036 271186708 -11006956 - L1MA4 LINE L1 -8 6292 5596 2089 87 73 0 chr1 271186708 271186994 -11006670 - AluSq SINE Alu -6 307 1 5494 146 35 18 chr1 271186994 271187291 -11006373 - L1MA4 LINE L1 -704 5596 5306 722 172 0 45 chr1 271187552 271187686 -11005978 - MER33 DNA MER1_type -196 128 1 1679 198 0 19 chr1 271187804 271188117 -11005547 - AluJo SINE Alu -3 309 3 1665 178 47 102 chr1 271188284 271188459 -11005205 + MER31B LTR ERV1 1 184 -282 2045 139 3 0 chr1 271188459 271188760 -11004904 - AluSx SINE Alu -10 302 1 1665 178 47 102 chr1 271188760 271189074 -11004590 + MER31B LTR ERV1 184 463 -3 1815 145 29 35 chr1 271189381 271189691 -11003973 - AluJb SINE Alu -4 308 1 1126 251 51 135 chr1 271189705 271190543 -11003121 + HERVL40 LTR ERVL 2035 2704 -333 2183 115 0 3 chr1 271190744 271191073 -11002591 - AluSx SINE Alu 0 328 1 1235 208 34 0 chr1 271191350 271191586 -11002078 + HERVL40 LTR ERVL 5277 5520 -10 2215 227 29 31 chr1 271191596 271191829 -11001835 + LTR40a LTR ERVL 1 233 -286 2102 117 3 52 chr1 271191829 271192138 -11001526 - AluSx SINE Alu -18 294 1 2215 227 29 31 chr1 271192138 271192424 -11001240 + LTR40a LTR ERVL 233 519 0 197 212 15 76 chr1 271192424 271192479 -11001185 - L2 LINE L2 -1010 2304 2252 243 264 174 77 chr1 271192602 271192727 -11000937 + MIR SINE MIR 12 156 -106 2298 92 20 0 chr1 271192727 271193020 -11000644 + AluSx SINE Alu 1 299 -13 243 264 174 77 chr1 271193020 271193049 -11000615 + MIR SINE MIR 156 181 -81 382 273 55 62 chr1 271193375 271193603 -11000061 - LTR65 LTR ERV1 -6 663 384 532 212 34 84 chr1 271193706 271193789 -10999875 - LTR65 LTR ERV1 -499 170 99 1870 112 81 34 chr1 271193789 271194111 -10999553 - MER1B DNA MER1_type 0 337 1 532 212 34 84 chr1 271194111 271194206 -10999458 - LTR65 LTR ERV1 -570 99 1 366 107 0 0 chr1 271194458 271194514 -10999150 + (TG)n Simple_repeat Simple_repeat 2 57 0 640 191 56 0 chr1 271194514 271194640 -10999024 - AluJo SINE Alu -178 134 2 2287 103 7 0 chr1 271195018 271195319 -10998345 + AluSx SINE Alu 1 303 -9 362 309 50 6 chr1 271195535 271195716 -10997948 - L1MEd LINE L1 -5018 1101 913 24 0 0 0 chr1 271196255 271196279 -10997385 + AT_rich Low_complexity Low_complexity 1 24 0 1100 171 0 0 chr1 271196279 271196443 -10997221 + AluJb SINE Alu 129 292 -20 464 17 33 0 chr1 271196455 271196515 -10997149 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 2430 90 0 0 chr1 271196993 271197292 -10996372 - AluSg SINE Alu -11 299 1 2232 129 0 3 chr1 271197437 271197747 -10995917 - AluSx SINE Alu -3 309 1 540 354 33 0 chr1 271197764 271198038 -10995626 + L1MEc LINE L1 841 1123 -6015 310 215 15 0 chr1 271198331 271198396 -10995268 - MER58 DNA MER1_type 0 2420 2355 306 249 177 0 chr1 271198409 271198590 -10995074 + L1MEc LINE L1 1458 1670 -5189 617 195 8 23 chr1 271198833 271198961 -10994703 + FLAM_A SINE Alu 1 126 -7 2313 81 3 0 chr1 271199301 271199620 -10994044 - AluSp SINE Alu 0 320 1 550 251 192 39 chr1 271199719 271200105 -10993559 + L1MC4 LINE L1 6488 7038 -860 * 847 104 37 85 chr1 271200084 271200166 -10993498 - L1M3 LINE L1 -374 6045 5971 2165 117 0 0 chr1 271200166 271200479 -10993185 - AluSx SINE Alu 0 313 1 847 104 37 85 chr1 271200479 271200558 -10993106 - L1M3 LINE L1 -448 5971 5890 703 144 54 0 chr1 271200566 271200677 -10992987 - LTR47A LTR ERVL 0 452 336 835 168 0 0 chr1 271200706 271200843 -10992821 - LTR47A LTR ERVL -315 137 1 256 135 0 0 chr1 271200843 271200880 -10992784 - L1M3 LINE L1 -532 5887 5851 233 159 0 0 chr1 271200881 271200925 -10992739 - L1M3 LINE L1 -549 5870 5827 * 1190 184 24 12 chr1 271200916 271201166 -10992498 - L1M3 LINE L1 -2294 4088 3836 * 5212 201 97 72 chr1 271201163 271201503 -10992161 - L1M3 LINE L1 -2757 3625 3295 2524 70 0 0 chr1 271201503 271201805 -10991859 - AluY SINE Alu -9 302 1 5212 201 97 72 chr1 271201805 271203407 -10990257 - L1M3 LINE L1 -3087 3295 1734 1927 144 3 34 chr1 271203407 271203705 -10989959 - AluJo SINE Alu -23 289 1 5212 201 97 72 chr1 271203705 271203946 -10989718 - L1M3 LINE L1 -4648 1734 1500 4325 82 3 75 chr1 271203946 271204603 -10989061 + LTR66 LTR ERVL 1 610 0 5212 201 97 72 chr1 271204603 271204702 -10988962 - L1M3 LINE L1 -4882 1500 1405 667 115 0 0 chr1 271204702 271204789 -10988875 + AluSg/x SINE Alu 192 278 -32 197 33 33 0 chr1 271204789 271204819 -10988845 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5212 201 97 72 chr1 271204819 271205255 -10988409 - L1M3 LINE L1 -4976 1406 779 25 31 0 0 chr1 271206362 271206394 -10987270 + AT_rich Low_complexity Low_complexity 1 32 0 2237 112 3 0 chr1 271207073 271207369 -10986295 + AluSx SINE Alu 1 297 -15 438 20 0 0 chr1 271207824 271207875 -10985789 + (TG)n Simple_repeat Simple_repeat 1 51 0 219 36 0 0 chr1 271207874 271207902 -10985762 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 481 251 200 10 chr1 271208000 271208195 -10985469 + MIR SINE MIR 19 250 -12 2307 94 0 19 chr1 271208383 271208691 -10984973 + AluSq SINE Alu 1 302 -11 863 135 0 16 chr1 271208924 271209050 -10984614 + FLAM_C SINE Alu 1 124 -19 2275 105 6 13 chr1 271209234 271209548 -10984116 + AluSx SINE Alu 1 312 0 317 155 0 11 chr1 271209596 271209659 -10984005 - Alu SINE Alu -6 296 245 848 151 0 0 chr1 271209686 271209812 -10983852 - FLAM_C SINE Alu -7 126 1 786 185 0 15 chr1 271209916 271210051 -10983613 + FLAM_A SINE Alu 1 133 0 1610 152 106 25 chr1 271210135 271210255 -10983409 - AluJb SINE Alu -5 307 198 3934 116 15 81 chr1 271210255 271210995 -10982669 - LTR8 LTR ERV1 0 691 1 1610 152 106 25 chr1 271210995 271211157 -10982507 - AluJb SINE Alu -114 198 2 396 0 0 0 chr1 271211292 271211336 -10982328 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1819 129 14 28 chr1 271211340 271211626 -10982038 - AluSq SINE Alu -31 282 1 1441 190 48 37 chr1 271211657 271211847 -10981817 + AluJb SINE Alu 2 198 -114 4358 78 2 2 chr1 271211847 271212398 -10981266 - MER41A LTR ERV1 -3 551 1 1441 190 48 37 chr1 271212398 271212502 -10981162 + AluJb SINE Alu 198 299 -13 2260 113 7 0 chr1 271213233 271213535 -10980129 - AluSx SINE Alu -8 304 1 1802 131 15 4 chr1 271213841 271214115 -10979549 + MER2 DNA MER2_type 3 279 -66 1798 181 0 0 chr1 271214139 271214420 -10979244 - AluJb SINE Alu -23 289 9 374 240 73 0 chr1 271215387 271215483 -10978181 + MER20 DNA MER1_type 46 148 -71 650 297 77 77 chr1 271215646 271215747 -10977917 + ERVL LTR ERVL 4054 4154 -1610 2332 96 10 0 chr1 271215747 271216048 -10977616 - AluSx SINE Alu -8 304 1 650 297 77 77 chr1 271216048 271216360 -10977304 + ERVL LTR ERVL 4153 4467 -1297 1145 74 0 0 chr1 271216686 271216821 -10976843 + AluSq/x SINE Alu 1 135 -178 2330 94 0 0 chr1 271216821 271217118 -10976546 + AluSg SINE Alu 1 297 -13 2322 114 0 0 chr1 271217726 271218034 -10975630 + AluSx SINE Alu 5 312 0 277 290 99 23 chr1 271219153 271219284 -10974380 - MER102b DNA MER1_type -48 293 153 777 184 0 0 chr1 271219306 271219442 -10974222 - FLAM_C SINE Alu -7 136 1 321 272 23 92 chr1 271219443 271219616 -10974048 - MER102b DNA MER1_type -176 165 5 2367 98 3 0 chr1 271219679 271219976 -10973688 + AluSx SINE Alu 1 298 -14 579 194 228 6 chr1 271220418 271220598 -10973066 + MIR SINE MIR 15 234 -28 235 260 0 20 chr1 271220621 271220690 -10972974 - MIR SINE MIR -64 144 78 2126 132 0 0 chr1 271220853 271221148 -10972516 - AluSx SINE Alu -12 300 6 361 277 11 0 chr1 271221713 271221807 -10971857 - MIR SINE MIR -68 140 46 316 310 76 21 chr1 271221909 271222054 -10971610 + MIR SINE MIR 110 262 0 185 62 0 31 chr1 271223168 271223200 -10970464 + (TTCTCC)n Simple_repeat Simple_repeat 4 34 0 845 167 8 0 chr1 271223200 271223332 -10970332 - FLAM_C SINE Alu 0 133 1 2388 130 11 3 chr1 271223345 271223707 -10969957 - L1MB4 LINE L1 0 6180 5816 511 110 9 30 chr1 271223707 271223935 -10969729 + AluJo SINE Alu 1 312 0 337 178 82 0 chr1 271223944 271224017 -10969647 - L1MB4 LINE L1 -352 5831 5753 2140 192 116 72 chr1 271224806 271225557 -10968107 - LTR1B LTR ERV1 -42 784 1 362 229 0 0 chr1 271225557 271225627 -10968037 - U13 snRNA snRNA -34 70 1 2054 117 20 3 chr1 271225786 271226086 -10967578 - AluSx SINE Alu -7 305 1 2259 115 0 0 chr1 271226550 271226854 -10966810 - AluSx SINE Alu -8 304 1 1829 86 13 0 chr1 271227677 271227910 -10965754 + AluSc SINE Alu 5 240 -69 183 129 0 0 chr1 271227911 271227942 -10965722 + (A)n Simple_repeat Simple_repeat 1 31 0 2123 111 3 3 chr1 271227951 271228249 -10965415 + AluSg SINE Alu 1 298 -12 299 324 9 9 chr1 271228338 271228443 -10965221 - L2 LINE L2 -5 3267 3163 269 289 80 36 chr1 271228610 271228766 -10964898 - MIR SINE MIR -63 145 42 2101 137 45 15 chr1 271229199 271229534 -10964130 - LTR3b LTR ERVK 0 500 156 1747 182 7 0 chr1 271229689 271229986 -10963678 - AluJo SINE Alu -13 299 1 2267 106 13 3 chr1 271230157 271230459 -10963205 + AluSp SINE Alu 1 305 -8 2358 101 3 0 chr1 271230717 271231025 -10962639 - AluSq SINE Alu -4 309 1 2149 117 7 7 chr1 271231342 271231649 -10962015 - AluSx SINE Alu -2 310 4 359 308 68 15 chr1 271231953 271232086 -10961578 - L3 LINE CR1 0 1577 1438 2301 105 3 0 chr1 271232166 271232461 -10961203 + AluSg SINE Alu 1 296 -14 1949 139 67 6 chr1 271232709 271233053 -10960611 - MLT1A1 LTR MaLR 0 365 1 1609 172 37 49 chr1 271233422 271233540 -10960124 + L1MC1 LINE L1 5989 6107 -226 2196 123 0 0 chr1 271233540 271233842 -10959822 + AluSx SINE Alu 1 302 -10 1609 172 37 49 chr1 271233842 271234072 -10959592 + L1MC1 LINE L1 6107 6333 0 2356 67 0 39 chr1 271234332 271234644 -10959020 + AluY SINE Alu 1 300 -11 2157 92 4 0 chr1 271234692 271234964 -10958700 + AluSg SINE Alu 1 273 -37 240 59 0 0 chr1 271234968 271235002 -10958662 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2249 109 0 0 chr1 271235675 271235979 -10957685 + AluSc SINE Alu 1 304 -5 3830 130 35 18 chr1 271238072 271238674 -10954990 - LTR9 LTR ERV1 0 612 1 742 99 0 0 chr1 271238740 271238841 -10954823 - MER107 DNA MER1_type -30 167 67 2103 162 50 0 chr1 271238843 271239219 -10954445 - MER57A LTR ERV1 -2 401 7 493 101 14 0 chr1 271239220 271239289 -10954375 - MER107 DNA MER1_type -127 70 1 2161 104 3 13 chr1 271240007 271240305 -10953359 + AluSp SINE Alu 1 295 -18 1498 97 0 5 chr1 271240780 271240975 -10952689 + AluSg/x SINE Alu 113 306 -6 1642 122 22 0 chr1 271241308 271241538 -10952126 + AluSg/x SINE Alu 75 309 -1 2461 86 3 0 chr1 271242797 271243099 -10950565 - AluSp SINE Alu -10 303 1 416 165 200 0 chr1 271243183 271243268 -10950396 + MER45 DNA AcHobo 1 102 -938 2168 175 146 11 chr1 271243282 271243727 -10949937 + MLT1D LTR MaLR 1 505 0 350 222 37 19 chr1 271243791 271243899 -10949765 - MIR SINE MIR 0 262 153 204 67 0 0 chr1 271245002 271245032 -10948632 + (CCGGG)n Simple_repeat Simple_repeat 3 32 0 246 325 56 24 chr1 271246046 271246172 -10947492 - MER5B DNA MER1_type -37 141 12 346 226 59 20 chr1 271246048 271246150 -10947514 + MER5A DNA MER1_type 50 155 -34 629 202 47 16 chr1 271246472 271246601 -10947063 - AluJo SINE Alu -178 134 2 1882 104 13 66 chr1 271246745 271247063 -10946601 - AluSx SINE Alu -11 301 1 2239 105 3 10 chr1 271247088 271247393 -10946271 - AluSx SINE Alu -9 303 1 764 305 139 26 chr1 271248225 271248842 -10944822 + L1ME3A LINE L1 325 1011 -5108 1282 240 75 6 chr1 271248844 271249177 -10944487 + L2 LINE L2 1313 1668 -1646 2210 128 0 0 chr1 271249188 271249492 -10944172 - AluSx SINE Alu -8 304 1 964 118 200 2 chr1 271249492 271249790 -10943874 - MSTA LTR MaLR -5 423 3 1772 293 89 9 chr1 271249792 271250474 -10943190 + L2 LINE L2 1666 2402 -912 537 300 57 65 chr1 271250454 271250701 -10942963 + L2 LINE L2 2842 3086 -227 * 219 174 22 0 chr1 271250708 271250754 -10942910 + L2 LINE L2 2717 2763 -551 392 219 37 12 chr1 271250766 271250848 -10942816 + MER21B LTR ERV1 13 96 -767 1379 235 68 32 chr1 271250892 271251474 -10942190 + MER21B LTR ERV1 103 756 -107 182 103 26 103 chr1 271251487 271251526 -10942138 + L2 LINE L2 2762 2797 -517 796 267 125 48 chr1 271251552 271251945 -10941719 + L2 LINE L2 2887 3309 -4 527 256 17 11 chr1 271251945 271252121 -10941543 + L1ME3A LINE L1 996 1172 -4947 1039 241 87 87 chr1 271252143 271252336 -10941328 + L1ME3A LINE L1 5287 5479 -674 2159 128 0 0 chr1 271252336 271252633 -10941031 + AluSx SINE Alu 6 302 -10 1039 241 87 87 chr1 271252633 271252782 -10940882 + L1ME3A LINE L1 5479 5627 -526 1673 169 67 0 chr1 271252782 271253066 -10940598 - AluJb SINE Alu -9 303 1 1039 241 87 87 chr1 271253066 271253172 -10940492 + L1ME3A LINE L1 5627 5732 -421 1742 206 150 29 chr1 271253172 271253619 -10940045 - MLT1D LTR MaLR 0 505 5 1039 241 87 87 chr1 271253619 271253812 -10939852 + L1ME3A LINE L1 5731 5930 -223 3065 155 21 21 chr1 271253950 271254577 -10939087 - L1PA16 LINE L1 -1 6165 5472 30 27 0 0 chr1 271254910 271254947 -10938717 + AT_rich Low_complexity Low_complexity 1 37 0 2219 213 18 46 chr1 271255389 271255935 -10937729 - L1MD2 LINE L1 -16 6343 5813 387 319 159 0 chr1 271256027 271256234 -10937430 + MIR SINE MIR 11 250 -12 21 0 0 0 chr1 271256589 271256610 -10937054 + AT_rich Low_complexity Low_complexity 1 21 0 2248 117 0 13 chr1 271257339 271257655 -10936009 - AluSx SINE Alu 0 312 1 23 54 0 0 chr1 271257655 271257692 -10935972 + AT_rich Low_complexity Low_complexity 1 37 0 2497 77 0 0 chr1 271257693 271258003 -10935661 - AluY SINE Alu -1 310 1 456 169 0 13 chr1 271258003 271258080 -10935584 - FLAM_A SINE Alu -9 133 58 1746 78 0 0 chr1 271258150 271258368 -10935296 - AluSg/x SINE Alu -12 300 83 1399 63 69 0 chr1 271258653 271258828 -10934836 - U2 snRNA snRNA -1 187 1 303 230 14 0 chr1 271258923 271258997 -10934667 - MER116 DNA Mariner -5 75 1 228 296 57 0 chr1 271259556 271259644 -10934020 - MLT1K LTR MaLR -485 103 11 2345 94 0 13 chr1 271259976 271260285 -10933379 - AluSx SINE Alu -7 305 1 849 281 148 47 chr1 271260420 271261196 -10932468 - L2 LINE L2 -1 3312 2446 254 204 0 0 chr1 271261235 271261279 -10932385 + L1M4 LINE L1 3788 3831 -2315 266 280 91 23 chr1 271261385 271261517 -10932147 + L1M4 LINE L1 4020 4160 -1986 1574 144 0 12 chr1 271261594 271261747 -10931917 - L1PB4 LINE L1 -3 6153 6003 1999 139 7 7 chr1 271261747 271262042 -10931622 - AluSx SINE Alu -17 295 1 1574 144 0 12 chr1 271262042 271262131 -10931533 - L1PB4 LINE L1 -153 6003 5914 313 230 81 145 chr1 271262134 271262197 -10931467 + L1M4 LINE L1 4165 4230 -1916 1778 151 10 27 chr1 271262197 271262495 -10931169 + AluSx SINE Alu 3 295 -17 313 230 81 145 chr1 271262495 271262680 -10930984 + L1M4 LINE L1 4230 4372 -1774 817 171 0 8 chr1 271262680 271262809 -10930855 + FLAM_A SINE Alu 1 128 -5 313 230 81 145 chr1 271262809 271263029 -10930635 + L1M4 LINE L1 4372 4604 -1542 2022 121 4 4 chr1 271263039 271263347 -10930317 + AluSx SINE Alu 1 308 0 1267 285 87 25 chr1 271263386 271263790 -10929874 - LTR16A LTR ERVL 0 450 22 228 170 0 38 chr1 271263832 271263885 -10929779 - MLT1E3 LTR MaLR -9 615 565 2088 133 10 10 chr1 271263886 271264187 -10929477 + AluSx SINE Alu 1 301 -11 301 253 27 0 chr1 271264189 271264264 -10929400 - L2 LINE L2 -274 3039 2963 7940 161 44 50 chr1 271264267 271264641 -10929023 - L1 LINE L1 -1174 5558 5183 876 215 0 35 chr1 271264641 271264813 -10928851 - FRAM SINE Alu 0 166 1 7940 161 44 50 chr1 271264813 271265924 -10927740 - L1 LINE L1 -1549 5183 4082 2231 114 0 16 chr1 271265924 271266230 -10927434 - AluSx SINE Alu -9 303 3 7940 161 44 50 chr1 271266230 271266543 -10927121 - L1 LINE L1 -2650 4082 3769 2703 221 77 125 chr1 271266542 271267806 -10925858 - L1 LINE L1 -3322 3410 2298 * 2063 144 0 7 chr1 271267806 271268111 -10925553 - AluSx SINE Alu -9 303 1 2703 221 77 125 chr1 271268111 271269185 -10924479 - L1 LINE L1 -4434 2298 1174 390 308 8 8 chr1 271269200 271269317 -10924347 - L1 LINE L1 -5694 959 843 300 240 13 13 chr1 271269323 271269398 -10924266 - L2 LINE L2 -859 2455 2381 2757 268 22 11 chr1 271269399 271270075 -10923589 - L1M3de LINE L1 -5051 1602 267 249 296 25 25 chr1 271270090 271270171 -10923493 - L1M3de LINE L1 -6294 359 279 286 291 38 0 chr1 271270374 271270453 -10923211 - L1M3de LINE L1 -6289 364 283 271 296 61 31 chr1 271270478 271270576 -10923088 - L1M3de LINE L1 -5638 1015 915 553 280 16 28 chr1 271270577 271270759 -10922905 - L1M3de LINE L1 -5634 1019 840 611 234 109 31 chr1 271270762 271270954 -10922710 - L2 LINE L2 -859 2455 2249 845 239 189 54 chr1 271271153 271271486 -10922178 - L2 LINE L2 -5 3308 3022 1803 152 13 41 chr1 271271486 271271801 -10921863 + AluJo SINE Alu 1 306 -6 2404 99 0 0 chr1 271271805 271272108 -10921556 + AluSx SINE Alu 1 303 -9 845 239 189 54 chr1 271272108 271272396 -10921268 - L2 LINE L2 -293 3020 2589 253 340 44 13 chr1 271272519 271272678 -10920986 + L2 LINE L2 2768 2931 -383 404 288 92 32 chr1 271272690 271272940 -10920724 + L2 LINE L2 3046 3310 -3 306 130 22 0 chr1 271273014 271273060 -10920604 - AluJ/FRAM SINE Alu -34 268 222 257 338 13 26 chr1 271273074 271273151 -10920513 + L2 LINE L2 3150 3225 -47 39 0 0 0 chr1 271275490 271275529 -10918135 + AT_rich Low_complexity Low_complexity 1 39 0 822 278 54 10 chr1 271275566 271275879 -10917785 - L1ME3A LINE L1 -288 5882 5556 303 203 0 0 chr1 271275957 271276021 -10917643 + (TATG)n Simple_repeat Simple_repeat 2 65 0 203 224 0 20 chr1 271276061 271276110 -10917554 + (TA)n Simple_repeat Simple_repeat 2 49 0 2264 97 7 7 chr1 271276194 271276493 -10917171 - AluSx SINE Alu -13 299 1 2362 107 0 0 chr1 271277357 271277656 -10916008 + AluSq SINE Alu 1 299 -14 387 301 157 12 chr1 271277987 271278503 -10915161 - L1MB8 LINE L1 -216 5962 5354 2177 269 107 30 chr1 271278503 271279621 -10914043 - L2 LINE L2 -7 3306 2108 1005 307 189 2 chr1 271279807 271280220 -10913444 - L1ME3A LINE L1 -13 6157 5610 1701 179 3 23 chr1 271280220 271280527 -10913137 + AluJo SINE Alu 1 301 -11 1005 307 189 2 chr1 271280527 271280673 -10912991 - L1ME3A LINE L1 -560 5610 5493 426 142 88 18 chr1 271280682 271280795 -10912869 - L1MA10 LINE L1 -2 6332 6212 1840 140 3 36 chr1 271280800 271281108 -10912556 + AluSx SINE Alu 1 298 -14 311 238 125 0 chr1 271281111 271281191 -10912473 - L1MC4 LINE L1 -1340 6702 6613 1711 157 21 21 chr1 271281195 271281481 -10912183 + AluJo SINE Alu 3 288 -24 250 196 39 20 chr1 271281655 271281706 -10911958 + L3 LINE CR1 1506 1557 -20 1711 157 21 21 chr1 271282364 271282650 -10911014 + AluJo SINE Alu 3 288 -24 250 196 39 20 chr1 271282824 271282875 -10910789 + L3 LINE CR1 1506 1557 -20 22 0 0 0 chr1 271284249 271284271 -10909393 + AT_rich Low_complexity Low_complexity 1 22 0 706 272 107 5 chr1 271284370 271284594 -10909070 - MIR SINE MIR -12 250 4 2494 64 0 0 chr1 271285573 271285869 -10907795 - AluY SINE Alu -15 296 1 25 51 0 0 chr1 271285966 271286005 -10907659 + AT_rich Low_complexity Low_complexity 1 39 0 1966 111 18 11 chr1 271286088 271286387 -10907277 - AluSx SINE Alu 0 301 1 21 36 0 0 chr1 271286587 271286615 -10907049 + AT_rich Low_complexity Low_complexity 1 28 0 852 256 66 47 chr1 271286675 271286992 -10906672 + L2 LINE L2 2986 3308 -5 1847 169 3 0 chr1 271287444 271287739 -10905925 + AluSx SINE Alu 1 296 -16 347 300 0 0 chr1 271287746 271287836 -10905828 + L1MC4 LINE L1 6614 6703 -1339 * 366 250 0 22 chr1 271287790 271287882 -10905782 - L1MC4 LINE L1 -1339 6703 6614 333 118 0 0 chr1 271288008 271288059 -10905605 + (TA)n Simple_repeat Simple_repeat 2 52 0 1001 217 46 18 chr1 271288397 271288614 -10905050 - MER58A DNA MER1_type 0 224 2 690 198 0 0 chr1 271288764 271288890 -10904774 + FLAM_A SINE Alu 1 126 -7 28 0 0 0 chr1 271289107 271289135 -10904529 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr1 271289297 271289324 -10904340 + AT_rich Low_complexity Low_complexity 1 27 0 853 158 0 0 chr1 271289326 271289453 -10904211 - FRAM SINE Alu -46 130 4 23 54 0 0 chr1 271289478 271289515 -10904149 + AT_rich Low_complexity Low_complexity 1 37 0 1652 134 8 4 chr1 271289753 271289999 -10903665 + AluSx SINE Alu 46 292 -20 2355 90 10 0 chr1 271290433 271290732 -10902932 + AluSg SINE Alu 1 302 -8 2266 88 3 7 chr1 271291622 271291916 -10901748 + AluSq SINE Alu 1 293 -20 229 219 0 0 chr1 271292246 271292287 -10901377 - L2 LINE L2 -18 3254 3214 633 269 6 19 chr1 271292325 271292485 -10901179 + MER5B DNA MER1_type 21 178 0 244 303 275 0 chr1 271292493 271292635 -10901029 - MER5A DNA MER1_type 0 189 9 687 202 158 0 chr1 271292682 271292885 -10900779 + Charlie5 DNA MER1_type 1 235 -2377 228 225 0 25 chr1 271292887 271292967 -10900697 + Charlie5 DNA MER1_type 2543 2620 0 22 35 0 0 chr1 271293337 271293366 -10900298 + AT_rich Low_complexity Low_complexity 1 29 0 1946 92 50 14 chr1 271294237 271294520 -10899144 - AluSg1 SINE Alu -16 293 1 2336 93 3 0 chr1 271294520 271294822 -10898842 - AluSq SINE Alu -10 303 1 21 36 0 0 chr1 271295159 271295187 -10898477 + AT_rich Low_complexity Low_complexity 1 28 0 271 301 103 32 chr1 271295744 271295900 -10897764 - L2 LINE L2 -222 3050 2884 1155 134 125 0 chr1 271296353 271296577 -10897087 - L1MA8 LINE L1 -41 6250 5999 651 168 8 38 chr1 271296907 271297038 -10896626 - FLAM_A SINE Alu -6 127 1 2226 111 3 3 chr1 271297213 271297520 -10896144 - AluSx SINE Alu -4 308 2 23 0 0 0 chr1 271298257 271298280 -10895384 + AT_rich Low_complexity Low_complexity 1 23 0 2162 108 14 0 chr1 271298411 271298707 -10894957 - AluSq SINE Alu -13 300 1 234 234 13 65 chr1 271299034 271299111 -10894553 + MIR SINE MIR 92 164 -98 395 125 0 0 chr1 271300321 271300385 -10893279 - L1MB3 LINE L1 -32 6151 6088 2004 146 0 0 chr1 271301911 271302198 -10891466 - AluSx SINE Alu -25 287 1 742 184 0 0 chr1 271303393 271303518 -10890146 - FLAM_A SINE Alu -8 125 1 985 254 27 66 chr1 271303537 271303871 -10889793 + MER46C DNA MER2_type 1 321 -17 287 255 89 70 chr1 271304069 271304226 -10889438 - MIR SINE MIR -46 216 57 2104 125 13 0 chr1 271304623 271304928 -10888736 - AluSq SINE Alu -4 309 1 261 342 36 36 chr1 271305228 271305339 -10888325 + L2 LINE L2 3158 3268 -4 2063 128 3 10 chr1 271305445 271305743 -10887921 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr1 271307132 271307153 -10886511 + AT_rich Low_complexity Low_complexity 1 21 0 1691 162 13 36 chr1 271307813 271308122 -10885542 - AluJo SINE Alu -10 302 1 250 257 47 31 chr1 271308500 271308648 -10885016 + MIR SINE MIR 21 225 -37 195 297 168 10 chr1 271308811 271308912 -10884752 - L2 LINE L2 0 3272 3156 554 307 71 5 chr1 271312405 271312617 -10881047 - MIR SINE MIR -12 250 25 520 294 75 26 chr1 271312719 271313397 -10880267 - L1MC4a LINE L1 -1633 6175 5431 839 191 0 0 chr1 271313424 271313560 -10880104 - FRAM SINE Alu -30 146 11 322 233 123 31 chr1 271313585 271313868 -10879796 - L1MC4a LINE L1 -747 5399 5097 304 283 81 65 chr1 271313911 271314219 -10879445 - L1MC4a LINE L1 -1123 5023 4711 386 174 0 14 chr1 271314784 271314853 -10878811 - L2 LINE L2 -47 3266 3199 201 298 0 0 chr1 271315985 271316032 -10877632 + L2 LINE L2 3251 3297 -16 2246 68 4 0 chr1 271317131 271317435 -10876229 - AluY SINE Alu 0 305 1 732 250 75 38 chr1 271320034 271320246 -10873418 + MIR SINE MIR 40 259 -3 1052 262 33 0 chr1 271321436 271321680 -10871984 + MIR SINE MIR 6 257 -5 320 132 19 0 chr1 271321887 271321940 -10871724 - MER103 DNA DNA -35 131 78 1927 135 7 7 chr1 271321970 271322266 -10871398 + AluSx SINE Alu 1 296 -16 535 197 25 0 chr1 271322950 271323072 -10870592 + L1MA1 LINE L1 3350 3474 -2672 7365 154 94 11 chr1 271323241 271324434 -10869230 + L1MA1 LINE L1 3478 4821 -1325 2435 91 0 0 chr1 271324434 271324743 -10868921 + AluY SINE Alu 1 309 -2 7365 154 94 11 chr1 271324743 271325042 -10868622 + L1MA1 LINE L1 4821 5094 -1052 1222 140 5 23 chr1 271325204 271325418 -10868246 + L1PB1 LINE L1 1 210 -6653 * 3338 188 65 15 chr1 271325398 271329306 -10864358 + L1PB1 LINE L1 1113 4825 -2042 1889 146 3 3 chr1 271329306 271329601 -10864063 + AluSx SINE Alu 1 295 -17 3338 188 65 15 chr1 271329601 271329789 -10863875 + L1PB1 LINE L1 4825 5002 -1865 1882 129 0 0 chr1 271329789 271330061 -10863603 + AluSx SINE Alu 1 272 -40 3338 188 65 15 chr1 271330061 271331342 -10862322 + L1PB1 LINE L1 5002 6865 -2 24 0 0 0 chr1 271331343 271331367 -10862297 + AT_rich Low_complexity Low_complexity 1 24 0 1990 147 0 0 chr1 271331370 271331677 -10861987 + AluSx SINE Alu 1 307 -5 6375 96 51 17 chr1 271331698 271332832 -10860832 + L1MA1 LINE L1 5112 6296 -6 683 168 8 0 chr1 271333419 271333550 -10860114 + L1M4 LINE L1 4934 5065 -1081 336 200 67 13 chr1 271333561 271333636 -10860028 - Tigger5 DNA MER2_type 0 2323 2245 * 1206 211 18 13 chr1 271333635 271333862 -10859802 - Tigger5 DNA MER2_type -2093 230 3 2639 160 38 13 chr1 271333874 271334531 -10859133 + L1M4 LINE L1 5080 5751 -433 2089 122 0 0 chr1 271334617 271334921 -10858743 + AluSx SINE Alu 3 306 -6 17602 122 14 106 chr1 271335017 271338644 -10855020 + L1P LINE L1 14 3306 -2840 22 0 0 0 chr1 271340281 271340303 -10853361 + AT_rich Low_complexity Low_complexity 1 22 0 1357 126 119 50 chr1 271340303 271340580 -10853084 - AluJo SINE Alu -12 300 5 246 70 140 53 chr1 271340606 271340663 -10853001 - MER41A LTR ERV1 -88 466 405 921 106 34 73 chr1 271340732 271340874 -10852790 + L1MB3 LINE L1 6010 6145 -38 2110 73 10 7 chr1 271340874 271341162 -10852502 + AluSg SINE Alu 10 298 -12 921 106 34 73 chr1 271341162 271341198 -10852466 + L1MB3 LINE L1 6145 6181 -2 373 307 86 29 chr1 271341602 271341742 -10851922 + L2 LINE L2 3125 3272 0 22 0 0 0 chr1 271342303 271342325 -10851339 + AT_rich Low_complexity Low_complexity 1 22 0 217 260 119 32 chr1 271342437 271342554 -10851110 - MIR SINE MIR -63 145 43 1508 187 97 7 chr1 271342577 271342887 -10850777 - MER2 DNA MER2_type 0 345 8 2038 77 15 0 chr1 271343153 271343413 -10850251 - AluSq SINE Alu -49 264 1 951 99 31 105 chr1 271343992 271344183 -10849481 - L1MA9 LINE L1 -279 6033 5857 1285 144 47 31 chr1 271344189 271344445 -10849219 + L1MA9 LINE L1 6048 6307 -5 460 191 0 22 chr1 271344647 271344736 -10848928 + FLAM_A SINE Alu 41 127 -15 533 110 30 40 chr1 271344754 271344854 -10848810 - AluS SINE Alu -212 100 2 317 250 60 40 chr1 271345021 271345121 -10848543 + L1MC4 LINE L1 6614 6715 -1327 199 318 100 36 chr1 271345166 271345276 -10848388 + MIR3 SINE MIR 51 167 -41 337 167 0 0 chr1 271345611 271345665 -10847999 + L1ME LINE L1 5603 5656 -465 416 147 53 32 chr1 271345772 271345867 -10847797 + MER103 DNA DNA 63 159 -7 2035 117 0 0 chr1 271346353 271346634 -10847030 + AluSq SINE Alu 1 281 -32 315 0 0 0 chr1 271346636 271346671 -10846993 + (TC)n Simple_repeat Simple_repeat 2 36 0 2543 55 0 0 chr1 271348046 271348354 -10845310 + AluY SINE Alu 4 311 0 275 305 68 8 chr1 271348834 271348952 -10844712 + MIR SINE MIR 18 142 -120 331 256 50 50 chr1 271349090 271349211 -10844453 + MIR SINE MIR 90 210 -52 2201 97 3 3 chr1 271349284 271349594 -10844070 + AluSx SINE Alu 1 310 -2 206 132 53 26 chr1 271349713 271349751 -10843913 + MIR SINE MIR 31 69 -139 197 193 0 18 chr1 271349781 271349838 -10843826 + GA-rich Low_complexity Low_complexity 2 57 0 294 235 0 0 chr1 271350924 271351005 -10842659 + (TG)n Simple_repeat Simple_repeat 1 81 0 249 294 104 25 chr1 271351499 271351662 -10842002 + MIR3 SINE MIR 24 199 -9 225 352 109 29 chr1 271352440 271352650 -10841014 + L3 LINE CR1 1118 1344 -233 210 347 163 0 chr1 271353275 271353373 -10840291 + L2 LINE L2 3134 3247 -25 2162 199 12 5 chr1 271353385 271353816 -10839848 + L1MB5 LINE L1 5733 6166 -8 2162 116 0 0 chr1 271353847 271354157 -10839507 - AluSg SINE Alu 0 310 1 2000 123 14 0 chr1 271354164 271354457 -10839207 - AluSq SINE Alu -16 297 1 1776 168 3 0 chr1 271354465 271354751 -10838913 - AluJb SINE Alu -23 289 3 23 0 0 0 chr1 271354758 271354781 -10838883 + AT_rich Low_complexity Low_complexity 1 23 0 2467 63 0 0 chr1 271355211 271355514 -10838150 + AluSc SINE Alu 1 303 -6 259 167 24 0 chr1 271355515 271355557 -10838107 + MER58 DNA MER1_type 130 2377 -43 663 225 0 0 chr1 271356581 271357080 -10836584 + (CA)n Simple_repeat Simple_repeat 1 499 0 187 381 0 0 chr1 271357285 271357348 -10836316 + L2 LINE L2 3246 3308 -5 248 300 125 0 chr1 271357934 271358094 -10835570 - MIR SINE MIR -70 192 13 1895 118 18 0 chr1 271359824 271360096 -10833568 + AluSx SINE Alu 1 277 -35 1763 126 83 0 chr1 271360775 271361052 -10832612 + AluSq SINE Alu 1 300 -13 617 270 65 35 chr1 271361072 271361272 -10832392 + MIR SINE MIR 19 224 -38 1807 98 0 0 chr1 271361276 271361512 -10832152 + AluSc SINE Alu 1 236 -73 305 217 22 76 chr1 271361555 271361647 -10832017 - MER5B DNA MER1_type -67 111 25 1533 153 22 0 chr1 271362492 271362799 -10830865 - AluJb SINE Alu 0 313 1 23 33 0 0 chr1 271364265 271364295 -10829369 + GC_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 271364319 271364343 -10829321 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr1 271364457 271364481 -10829183 + GC_rich Low_complexity Low_complexity 1 24 0 206 260 19 36 chr1 271364585 271364736 -10828928 + C-rich Low_complexity Low_complexity 1 148 0 22 35 0 0 chr1 271364829 271364858 -10828806 + AT_rich Low_complexity Low_complexity 1 29 0 859 277 32 25 chr1 271366274 271366588 -10827076 - MLT1J LTR MaLR -193 318 3 1938 105 0 0 chr1 271366750 271367016 -10826648 + AluSx SINE Alu 15 280 -32 752 70 8 31 chr1 271367016 271367144 -10826520 + (GGAA)n Simple_repeat Simple_repeat 4 128 0 518 113 0 12 chr1 271367362 271367442 -10826222 - MADE1 DNA Mariner 0 80 2 1956 294 109 19 chr1 271367715 271368645 -10825019 - ERVL LTR ERVL -693 5071 4059 1469 305 42 13 chr1 271368669 271369193 -10824471 - ERVL LTR ERVL -2297 3467 2929 452 277 91 30 chr1 271369265 271369635 -10824029 - ERVL LTR ERVL -2942 2822 2376 2289 76 0 7 chr1 271369635 271369938 -10823726 - AluSx SINE Alu -11 301 1 2339 68 0 19 chr1 271369938 271370249 -10823415 - AluY SINE Alu -6 305 1 1112 70 0 0 chr1 271370249 271370391 -10823273 - AluSg/x SINE Alu -10 302 161 545 308 109 45 chr1 271370775 271371216 -10822448 - ERVL LTR ERVL -4324 1440 972 1975 115 3 32 chr1 271371549 271371862 -10821802 + AluSx SINE Alu 7 310 -2 904 247 25 37 chr1 271372315 271372558 -10821106 - LTR67 LTR ERVL -9 548 309 704 285 62 82 chr1 271372569 271372972 -10820692 - MLT1L LTR MaLR 0 593 117 553 300 29 62 chr1 271373057 271373300 -10820364 - LTR67 LTR ERVL -315 242 8 1863 129 7 26 chr1 271373364 271373667 -10819997 + AluSx SINE Alu 1 297 -15 189 122 0 98 chr1 271374699 271374740 -10818924 + L3 LINE CR1 510 546 -1031 433 223 9 36 chr1 271375094 271375206 -10818458 - L1MB7 LINE L1 -43 6141 6033 2289 92 0 26 chr1 271375517 271375821 -10817843 + AluSg SINE Alu 1 296 -14 977 234 82 7 chr1 271376290 271376572 -10817092 - MER69 DNA AcHobo -3 2523 2221 986 174 0 0 chr1 271376572 271376733 -10816931 + FRAM SINE Alu 16 176 0 1234 209 58 17 chr1 271376750 271377094 -10816570 - MER69 DNA AcHobo -297 2229 1872 204 351 14 0 chr1 271378162 271378236 -10815428 + MIR SINE MIR 157 231 -31 1054 96 7 0 chr1 271378390 271378525 -10815139 + AluSq/x SINE Alu 1 136 -176 2188 113 0 0 chr1 271378525 271378842 -10814822 + AluSx SINE Alu 1 317 0 252 295 54 33 chr1 271379200 271379369 -10814295 - MIR SINE MIR -49 213 45 1978 102 73 4 chr1 271379735 271380010 -10813654 + AluSx SINE Alu 1 294 -18 2189 127 3 0 chr1 271380254 271380561 -10813103 + AluSq SINE Alu 1 308 -5 3054 169 59 7 chr1 271380561 271381169 -10812495 - LTR51 LTR ERV1 -17 654 15 1384 176 132 0 chr1 271381169 271381341 -10812323 - AluJo SINE Alu 0 314 166 447 19 0 0 chr1 271381341 271381393 -10812271 + (TG)n Simple_repeat Simple_repeat 1 52 0 1384 176 132 0 chr1 271381393 271381501 -10812163 - AluJo SINE Alu -148 166 1 232 97 0 0 chr1 271381501 271381532 -10812132 - LTR51 LTR ERV1 -640 31 1 1636 177 4 8 chr1 271382113 271382379 -10811285 + AluJo SINE Alu 12 276 -36 1892 163 42 31 chr1 271382629 271383015 -10810649 - MLT1B LTR MaLR 0 390 1 187 256 0 93 chr1 271383087 271383173 -10810491 - MIR SINE MIR -15 247 170 356 185 25 0 chr1 271383541 271383622 -10810042 + L1MA2 LINE L1 6056 6138 -166 2183 106 0 0 chr1 271383625 271383945 -10809719 + AluSx SINE Alu 1 320 0 336 335 98 5 chr1 271384468 271384671 -10808993 - L2 LINE L2 -80 3233 3012 2368 92 3 0 chr1 271384943 271385246 -10808418 + AluSq SINE Alu 1 304 -9 366 330 66 25 chr1 271385370 271385567 -10808097 + MIR SINE MIR 21 225 -37 206 217 14 0 chr1 271385808 271385877 -10807787 + CT-rich Low_complexity Low_complexity 3 72 0 524 62 0 37 chr1 271387333 271387414 -10806250 + FLAM_A SINE Alu 62 139 -3 1246 127 11 0 chr1 271387427 271387608 -10806056 + AluSg/x SINE Alu 120 302 -10 1769 101 0 8 chr1 271387610 271387847 -10805817 + AluSq SINE Alu 1 235 -78 313 165 0 0 chr1 271388058 271388131 -10805533 + Alu SINE Alu 238 300 0 507 203 8 8 chr1 271388516 271388639 -10805025 + L1MB3 LINE L1 6042 6164 -19 350 167 13 0 chr1 271388639 271388709 -10804955 + L1MB4 LINE L1 6096 6174 -6 2345 91 0 3 chr1 271389262 271389558 -10804106 + AluSg SINE Alu 1 295 -15 1878 187 0 0 chr1 271389580 271389879 -10803785 - AluJb SINE Alu -13 299 1 306 216 39 78 chr1 271389920 271390022 -10803642 - L1ME4a LINE L1 -4 6117 6020 2060 125 7 4 chr1 271390093 271390394 -10803270 + AluSq SINE Alu 1 302 0 316 287 28 0 chr1 271390410 271390518 -10803146 - L1ME4a LINE L1 -229 5892 5782 2431 102 0 0 chr1 271390641 271390954 -10802710 + AluSp SINE Alu 1 313 0 2154 126 20 0 chr1 271391047 271391340 -10802324 - AluSp SINE Alu -14 299 1 1832 190 0 3 chr1 271391421 271391721 -10801943 - AluJb SINE Alu -11 301 3 630 159 63 8 chr1 271391736 271391862 -10801802 - FLAM_C SINE Alu 0 133 1 195 424 40 0 chr1 271392065 271392190 -10801474 - L2 LINE L2 -7 3265 3136 313 354 20 14 chr1 271392495 271392642 -10801022 + L2 LINE L2 2889 3036 -236 1849 196 33 33 chr1 271392679 271393132 -10800532 + MLT1C LTR MaLR 15 467 0 190 327 40 40 chr1 271393184 271393285 -10800379 + L2 LINE L2 3128 3228 -85 271 379 143 0 chr1 271393476 271393616 -10800048 - MIR SINE MIR -55 207 48 22 0 0 0 chr1 271394025 271394047 -10799617 + AT_rich Low_complexity Low_complexity 1 22 0 271 383 28 19 chr1 271397000 271397214 -10796450 + MIR SINE MIR 28 243 -19 804 205 125 73 chr1 271397349 271397498 -10796166 + MER33 DNA MER1_type 3 143 -2442 2366 98 3 0 chr1 271397498 271397795 -10795869 - AluSp SINE Alu -15 298 1 804 205 125 73 chr1 271397795 271397877 -10795787 + MER33 DNA MER1_type 143 219 -2366 2081 132 3 32 chr1 271397877 271398188 -10795476 + AluSx SINE Alu 1 302 -10 804 205 125 73 chr1 271398188 271398258 -10795406 + MER33 DNA MER1_type 219 321 -3 2303 119 0 6 chr1 271398616 271398928 -10794736 - AluSx SINE Alu -2 310 1 1652 183 37 0 chr1 271398936 271399209 -10794455 - AluJo SINE Alu -16 296 14 22 0 0 0 chr1 271399607 271399629 -10794035 + AT_rich Low_complexity Low_complexity 1 22 0 230 247 165 0 chr1 271399824 271399909 -10793755 + MIR3 SINE MIR 107 205 -3 249 243 199 15 chr1 271399974 271400110 -10793554 - L1ME4a LINE L1 -34 6087 5927 984 51 0 0 chr1 271400127 271400245 -10793419 - AluY SINE Alu -15 296 179 1938 56 45 37 chr1 271400461 271400730 -10792934 + AluY SINE Alu 40 310 -1 2434 101 0 0 chr1 271400740 271401047 -10792617 + AluSx SINE Alu 1 307 -5 207 269 121 99 chr1 271401297 271401438 -10792226 - MIR SINE MIR -70 192 49 610 270 69 0 chr1 271401530 271401719 -10791945 + MER63A DNA MER1_type 9 210 0 558 165 0 0 chr1 271402047 271402166 -10791498 - AluJ SINE Alu 0 316 198 327 173 7 113 chr1 271402167 271402264 -10791400 - AluJo SINE Alu -150 152 86 2335 58 34 10 chr1 271402265 271402559 -10791105 - AluY SINE Alu -10 301 1 888 120 0 0 chr1 271404242 271404359 -10789305 - FLAM_C SINE Alu -26 117 1 231 277 92 35 chr1 271404368 271404509 -10789155 + LTR11 LTR ERV 358 506 -178 410 194 28 10 chr1 271404660 271405420 -10788244 + (CA)n Simple_repeat Simple_repeat 1 773 0 206 250 0 9 chr1 271405432 271405548 -10788116 + (CA)n Simple_repeat Simple_repeat 2 116 0 416 326 112 17 chr1 271406019 271406252 -10787412 + MIR SINE MIR 8 262 0 2240 122 0 7 chr1 271407269 271407573 -10786091 + AluSx SINE Alu 1 302 -10 614 199 30 23 chr1 271408001 271408132 -10785532 - MIR SINE MIR -124 138 7 837 76 71 13 chr1 271408227 271408461 -10785203 + CT-rich Low_complexity Low_complexity 1 247 0 2105 127 0 20 chr1 271408461 271408760 -10784904 - AluSx SINE Alu -19 293 1 480 94 0 0 chr1 271409122 271409186 -10784478 + AluS SINE Alu 2 65 -248 1080 189 101 18 chr1 271409225 271409511 -10784153 + LTR10A LTR ERV1 1 310 -299 397 160 0 0 chr1 271409531 271409606 -10784058 + LTR10A LTR ERV1 178 252 -357 418 147 0 0 chr1 271409647 271409722 -10783942 + LTR10A LTR ERV1 178 252 -357 305 172 0 0 chr1 271409734 271409792 -10783872 + LTR10A LTR ERV1 178 235 -374 418 147 0 0 chr1 271409792 271409867 -10783797 + LTR10A LTR ERV1 178 252 -357 354 187 0 0 chr1 271409879 271409954 -10783710 + LTR10A LTR ERV1 178 252 -357 354 187 0 0 chr1 271409966 271410041 -10783623 + LTR10A LTR ERV1 178 252 -357 354 187 0 0 chr1 271410053 271410128 -10783536 + LTR10A LTR ERV1 178 252 -357 397 160 0 0 chr1 271410140 271410215 -10783449 + LTR10A LTR ERV1 178 252 -357 284 190 0 0 chr1 271410227 271410285 -10783379 + LTR10A LTR ERV1 178 235 -374 397 160 0 0 chr1 271410285 271410360 -10783304 + LTR10A LTR ERV1 178 252 -357 313 213 0 0 chr1 271410372 271410447 -10783217 + LTR10A LTR ERV1 178 252 -357 957 164 16 27 chr1 271411691 271411874 -10781790 + Tigger2a DNA MER2_type 1 181 -253 920 200 0 22 chr1 271411874 271412054 -10781610 - FRAM SINE Alu 0 40 1 1022 161 0 0 chr1 271412244 271412399 -10781265 - FRAM SINE Alu -11 155 1 255 299 0 11 chr1 271412915 271413002 -10780662 + L1ME4a LINE L1 5841 5926 -195 190 224 13 26 chr1 271413639 271413715 -10779949 + CT-rich Low_complexity Low_complexity 1 75 0 558 97 53 9 chr1 271413817 271413930 -10779734 + L1MCa LINE L1 2313 2430 -3996 22 35 0 0 chr1 271414109 271414138 -10779526 + GC_rich Low_complexity Low_complexity 1 29 0 2821 82 36 90 chr1 271414189 271414690 -10778974 + SVA Other Other 393 866 -520 505 88 0 48 chr1 271414703 271414828 -10778836 + SVA Other Other 661 779 -607 3939 161 88 34 chr1 271414928 271415019 -10778645 - L1MCa LINE L1 -5500 926 841 2514 82 7 0 chr1 271415019 271415325 -10778339 + AluSc SINE Alu 1 308 -1 3939 161 88 34 chr1 271415325 271416078 -10777586 - L1MCa LINE L1 -5585 841 37 2365 81 0 0 chr1 271416529 271416840 -10776824 + AluSx SINE Alu 1 311 0 2292 101 0 16 chr1 271416938 271417255 -10776409 + AluSx SINE Alu 1 312 0 33 56 0 0 chr1 271417983 271418037 -10775627 + AT_rich Low_complexity Low_complexity 1 54 0 861 194 6 6 chr1 271418160 271418330 -10775334 - FAM SINE Alu -5 170 1 1318 272 2 23 chr1 271418347 271418741 -10774923 - L1ME1 LINE L1 -5 6161 5776 404 249 93 22 chr1 271418763 271418785 -10774879 - L1MEc LINE L1 -4308 2088 2069 509 103 23 0 chr1 271418785 271418872 -10774792 - L1PA5 LINE L1 -1 6153 6065 404 249 93 22 chr1 271418872 271419074 -10774590 - L1MEc LINE L1 -4327 2069 1848 3841 243 63 44 chr1 271419113 271419251 -10774413 - L1MEc LINE L1 -4673 1542 1408 709 164 22 30 chr1 271419251 271419385 -10774279 - FLAM_A SINE Alu 0 133 1 3841 243 63 44 chr1 271419385 271420554 -10773110 - L1MEc LINE L1 -4807 1408 234 2162 127 27 0 chr1 271420554 271420846 -10772818 + AluSx SINE Alu 1 300 -12 3841 243 63 44 chr1 271420846 271421048 -10772616 - L1MEc LINE L1 -5981 234 37 1617 204 7 3 chr1 271421163 271421469 -10772195 + AluJb SINE Alu 1 307 0 452 326 133 3 chr1 271421477 271421834 -10771830 - L1ME LINE L1 -312 5809 5392 1476 192 52 14 chr1 271421839 271422130 -10771534 - AluJo SINE Alu -10 302 1 444 133 67 56 chr1 271422145 271422235 -10771429 - FLAM_C SINE Alu -16 127 37 386 278 65 85 chr1 271422262 271422568 -10771096 - L1ME LINE L1 -768 5378 5079 2552 66 0 3 chr1 271422568 271422873 -10770791 + AluY SINE Alu 1 304 -7 2302 121 0 0 chr1 271422883 271423181 -10770483 + AluSq SINE Alu 1 298 -15 282 56 0 0 chr1 271423248 271423284 -10770380 + (TCTCCC)n Simple_repeat Simple_repeat 2 37 0 708 28 28 28 chr1 271424037 271424144 -10769520 + (TCTCCC)n Simple_repeat Simple_repeat 3 109 0 5537 69 28 58 chr1 271424144 271425220 -10768444 + SVA Other Other 72 868 -520 640 52 8 37 chr1 271425237 271425371 -10768293 + SVA Other Other 665 794 -592 6730 44 2 12 chr1 271425399 271426198 -10767466 + SVA Other Other 596 1386 0 730 309 122 8 chr1 271426209 271426302 -10767362 - L1ME LINE L1 -1106 5040 4959 204 40 0 0 chr1 271426302 271426327 -10767337 + (TG)n Simple_repeat Simple_repeat 2 26 0 730 309 122 8 chr1 271426327 271426938 -10766726 - L1ME LINE L1 -1187 4959 4256 1563 173 3 49 chr1 271427900 271428207 -10765457 + AluJo SINE Alu 1 293 -9 1569 119 8 34 chr1 271428238 271428453 -10765211 + L1PB1 LINE L1 5888 6096 -55 2363 51 7 0 chr1 271428453 271428746 -10764918 + AluY SINE Alu 1 295 -16 1569 119 8 34 chr1 271428746 271428798 -10764866 + L1PB1 LINE L1 6096 6148 -3 182 287 104 35 chr1 271428881 271428996 -10764668 + L2 LINE L2 2636 2758 -556 184 231 0 0 chr1 271429087 271429126 -10764538 + MIR SINE MIR 66 104 -158 1039 138 0 0 chr1 271429139 271429291 -10764373 - AluSc SINE Alu -24 285 134 315 309 92 53 chr1 271429361 271429513 -10764151 - MLT1K LTR MaLR -385 203 46 692 215 43 6 chr1 271430507 271430670 -10762994 - AluJo/FRAM SINE Alu -10 302 134 1449 162 37 34 chr1 271430670 271430823 -10762841 - AluJb SINE Alu -15 297 141 1828 120 4 7 chr1 271430823 271431121 -10762543 - AluSx SINE Alu 0 312 28 1449 162 37 34 chr1 271431121 271431263 -10762401 - AluJb SINE Alu -171 141 1 2067 134 3 6 chr1 271431562 271431875 -10761789 - AluSx SINE Alu 0 312 1 224 208 0 21 chr1 271433621 271433669 -10759995 + GA-rich Low_complexity Low_complexity 1 47 0 1671 148 41 0 chr1 271435306 271435577 -10758087 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr1 271435580 271435603 -10758061 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 266 285 157 52 chr1 271435728 271435900 -10757764 + L3 LINE CR1 1213 1402 -175 435 300 70 69 chr1 271436185 271436291 -10757373 + L2 LINE L2 2590 2694 -578 1715 127 102 3 chr1 271436291 271436575 -10757089 - AluSx SINE Alu 0 312 1 435 300 70 69 chr1 271436575 271437151 -10756513 + L2 LINE L2 2694 3271 -1 1962 119 0 20 chr1 271437371 271437666 -10755998 - AluSx SINE Alu -23 289 1 1419 157 56 42 chr1 271438747 271439034 -10754630 - AluJo SINE Alu -17 295 5 1779 119 49 7 chr1 271439092 271439378 -10754286 + AluSx SINE Alu 1 298 -14 453 198 86 0 chr1 271439792 271439908 -10753756 + MLT1B-int LTR MaLR 1246 1371 0 983 216 5 5 chr1 271439908 271440102 -10753562 + MLT1B LTR MaLR 1 194 -196 2100 120 0 0 chr1 271440148 271440440 -10753224 - AluSq SINE Alu -21 292 1 21 0 0 0 chr1 271440446 271440467 -10753197 + AT_rich Low_complexity Low_complexity 1 21 0 1472 158 62 11 chr1 271440467 271440739 -10752925 + AluJo SINE Alu 1 286 -26 800 160 0 53 chr1 271440739 271440889 -10752775 - FLAM_C SINE Alu 0 143 2 262 268 226 37 chr1 271440914 271441078 -10752586 + MIR SINE MIR 11 205 -57 2119 101 0 0 chr1 271441137 271441424 -10752240 - AluSx SINE Alu -15 297 11 2457 65 0 0 chr1 271441458 271441765 -10751899 - AluY SINE Alu -4 307 1 1172 149 0 63 chr1 271442767 271442989 -10750675 + AluJb SINE Alu 83 290 -22 2058 104 0 3 chr1 271442994 271443281 -10750383 + AluSx SINE Alu 6 291 -21 293 261 0 0 chr1 271443654 271443719 -10749945 - MIR SINE MIR -60 148 84 1174 95 13 5 chr1 271443893 271444123 -10749541 + (TTTC)n Simple_repeat Simple_repeat 1 411 0 1544 219 27 9 chr1 271444529 271444858 -10748806 - MER7A DNA MER2_type -2 344 12 199 196 54 18 chr1 271444885 271444941 -10748723 + L2 LINE L2 2944 3001 -312 437 295 94 7 chr1 271445839 271445988 -10747676 + MER91B DNA MER1_type 1 162 -28 23 0 0 0 chr1 271446365 271446388 -10747276 + AT_rich Low_complexity Low_complexity 1 23 0 2080 112 0 3 chr1 271446388 271446682 -10746982 - AluSx SINE Alu -19 293 1 909 157 6 79 chr1 271446775 271446920 -10746744 + FRAM SINE Alu 1 132 -170 1852 102 41 48 chr1 271446920 271447234 -10746430 - AluSx SINE Alu 0 312 1 909 157 6 79 chr1 271447234 271447266 -10746398 + FRAM SINE Alu 132 165 -1 2100 104 0 19 chr1 271447724 271448042 -10745622 - AluSx SINE Alu 0 312 1 1963 175 0 3 chr1 271448276 271448624 -10745040 - L1PA16 LINE L1 -14 6152 5806 1620 201 37 90 chr1 271449390 271449708 -10743956 - MLT1C LTR MaLR -2 465 180 2144 100 3 28 chr1 271449708 271450029 -10743635 - AluSq SINE Alu 0 313 1 1620 201 37 90 chr1 271450029 271450198 -10743466 - MLT1C LTR MaLR -287 180 4 327 291 88 44 chr1 271450253 271450572 -10743092 + L2 LINE L2 2827 3159 -113 2027 122 16 0 chr1 271451039 271451342 -10742322 - AluSx SINE Alu -4 308 1 21 36 0 0 chr1 271451457 271451485 -10742179 + AT_rich Low_complexity Low_complexity 1 28 0 1176 84 31 3 chr1 271452831 271453063 -10740601 + AluSq SINE Alu 2 301 -12 616 337 69 20 chr1 271453087 271453393 -10740271 - MLT1K LTR MaLR -112 476 156 2176 95 3 0 chr1 271453619 271453913 -10739751 - AluSq SINE Alu -8 305 11 331 263 92 33 chr1 271454298 271454450 -10739214 + MIR SINE MIR 80 240 -22 1305 159 0 18 chr1 271455069 271455322 -10738342 + AluJb SINE Alu 62 310 0 2553 55 0 0 chr1 271456120 271456429 -10737235 - AluY SINE Alu -2 309 1 2043 121 14 0 chr1 271456431 271456721 -10736943 - AluSx SINE Alu -18 294 1 1341 174 7 51 chr1 271457311 271457605 -10736059 + AluJo SINE Alu 31 311 -1 324 234 137 16 chr1 271457721 271457845 -10735819 - MER5A DNA MER1_type -13 176 38 1817 143 0 26 chr1 271458078 271458386 -10735278 + AluSx SINE Alu 10 309 -3 2137 84 28 0 chr1 271458925 271459209 -10734455 - AluSx SINE Alu -20 292 1 2575 178 37 21 chr1 271459220 271459664 -10734000 - LTR53 LTR ERVL 0 519 64 2092 101 0 23 chr1 271459664 271459970 -10733694 - AluSx SINE Alu 0 312 14 2575 178 37 21 chr1 271459970 271460036 -10733628 - LTR53 LTR ERVL -455 64 1 5865 205 66 9 chr1 271460258 271461454 -10732210 - HERVL74 LTR ERVL -2331 3354 2091 1866 208 11 56 chr1 271461508 271462002 -10731662 - HERVL74 LTR ERVL -1420 2136 1621 2016 144 0 0 chr1 271462002 271462308 -10731356 + AluSx SINE Alu 1 306 -6 1866 208 11 56 chr1 271462308 271462333 -10731331 - HERVL74 LTR ERVL -1935 1621 1675 1696 185 3 10 chr1 271462333 271462641 -10731023 - AluJo SINE Alu -6 306 1 1866 208 11 56 chr1 271462641 271462666 -10730998 - HERVL74 LTR ERVL -1880 1676 1651 885 218 31 5 chr1 271462679 271462872 -10730792 - HERVL74 LTR ERVL -2566 990 793 231 108 185 77 chr1 271462950 271463015 -10730649 + tRNA-Met-i tRNA tRNA 2 73 -2 1781 137 13 13 chr1 271464149 271464456 -10729208 - AluJo SINE Alu -5 307 1 2347 203 64 34 chr1 271464467 271464804 -10728860 - LTR53 LTR ERVL 0 519 161 1293 178 94 45 chr1 271464804 271465064 -10728600 + AluJo SINE Alu 1 278 -24 1691 122 4 4 chr1 271465064 271465318 -10728346 - AluSp SINE Alu -17 296 43 1293 178 94 45 chr1 271465318 271465343 -10728321 + AluJo SINE Alu 278 300 -2 2347 203 64 34 chr1 271465343 271465508 -10728156 - LTR53 LTR ERVL -358 161 2 222 91 0 0 chr1 271465533 271465566 -10728098 + (TTTC)n Simple_repeat Simple_repeat 1 33 0 224 30 30 0 chr1 271466127 271466160 -10727504 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 8100 60 143 30 chr1 271466167 271467397 -10726267 - SVA Other Other -17 1369 1 1042 85 92 0 chr1 271467398 271467551 -10726113 - AluSg/x SINE Alu -11 301 135 183 42 0 0 chr1 271467552 271467576 -10726088 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1925 98 0 28 chr1 271467576 271467863 -10725801 - AluY SINE Alu -32 279 1 1922 125 4 0 chr1 271469014 271469317 -10724347 + AluSg SINE Alu 1 304 0 669 159 18 0 chr1 271469494 271469607 -10724057 + FLAM_A SINE Alu 16 130 -12 2824 6 0 0 chr1 271469818 271470131 -10723533 + AluYb8 SINE Alu 1 313 -5 984 173 209 8 chr1 271470337 271470586 -10723078 + AluSg SINE Alu 1 299 -11 22 35 0 0 chr1 271470640 271470669 -10722995 + AT_rich Low_complexity Low_complexity 1 29 0 1694 116 0 0 chr1 271470790 271471022 -10722642 + AluSq SINE Alu 10 241 -72 647 164 36 0 chr1 271471025 271471135 -10722529 + AluJb SINE Alu 198 311 -1 768 181 0 31 chr1 271471156 271471316 -10722348 + L1MC3 LINE L1 7630 7784 -1 691 145 0 61 chr1 271471455 271471586 -10722078 + AluJo/FLAM SINE Alu 3 125 -177 1348 129 5 0 chr1 271471588 271471789 -10721875 - AluSq SINE Alu -111 202 1 299 273 91 0 chr1 271471789 271471877 -10721787 - MIR SINE MIR -67 195 100 1250 127 0 0 chr1 271471888 271472077 -10721587 + AluSg/x SINE Alu 121 309 -1 1428 136 41 0 chr1 271472315 271472414 -10721250 - MER30 DNA MER1_type 0 230 136 2050 128 0 7 chr1 271472414 271472718 -10720946 - AluSx SINE Alu -10 302 1 1428 136 41 0 chr1 271472718 271472839 -10720825 - MER30 DNA MER1_type -94 136 1 308 310 86 27 chr1 271473265 271473452 -10720212 - L2 LINE L2 -1077 2237 2040 448 244 128 44 chr1 271473474 271473654 -10720010 + L2 LINE L2 3118 3312 -1 1850 128 6 60 chr1 271474200 271474335 -10719329 + AluJb SINE Alu 1 142 -170 1993 121 3 16 chr1 271474335 271474640 -10719024 - AluSx SINE Alu -11 301 1 1850 128 6 60 chr1 271474640 271474823 -10718841 + AluJb SINE Alu 142 302 -10 1821 156 18 128 chr1 271475796 271475919 -10717745 - MLT1B LTR MaLR -1 389 254 1643 112 27 27 chr1 271475919 271476179 -10717485 - AluSx SINE Alu -5 307 48 1821 156 18 128 chr1 271476179 271476492 -10717172 - MLT1B LTR MaLR -136 254 1 6872 161 16 22 chr1 271476847 271478700 -10714964 - L1MC1 LINE L1 -1 6332 4500 4451 133 55 29 chr1 271478703 271479453 -10714211 + Tigger1 DNA MER2_type 3 771 -1647 26 0 0 0 chr1 271479453 271479479 -10714185 + AT_rich Low_complexity Low_complexity 1 26 0 332 247 37 12 chr1 271479480 271479561 -10714103 - L1MCa LINE L1 -4361 2065 1983 236 56 0 56 chr1 271479591 271479627 -10714037 - Tigger1 DNA MER2_type -1391 1027 994 221 80 93 0 chr1 271479639 271479714 -10713950 + (TA)n Simple_repeat Simple_repeat 1 82 0 1989 112 3 24 chr1 271479714 271480008 -10713656 - AluSx SINE Alu -24 288 1 4369 103 6 72 chr1 271480009 271480296 -10713368 + Tigger1 DNA MER2_type 751 1055 -1363 2039 136 0 0 chr1 271480296 271480604 -10713060 - AluSx SINE Alu -4 308 1 4369 103 6 72 chr1 271480604 271481033 -10712631 + Tigger1 DNA MER2_type 1055 1419 -999 2615 145 39 2 chr1 271481033 271481446 -10712218 + MSTC LTR MaLR 1 428 0 5762 114 34 48 chr1 271481446 271482417 -10711247 + Tigger1 DNA MER2_type 1417 2373 -45 28 0 0 0 chr1 271482424 271482452 -10711212 + AT_rich Low_complexity Low_complexity 1 28 0 408 238 107 8 chr1 271482458 271482580 -10711084 - MIR SINE MIR -57 205 72 2182 89 0 7 chr1 271482609 271482902 -10710762 - AluSq SINE Alu -22 291 1 260 179 0 0 chr1 271483015 271483054 -10710610 + Tigger1 DNA MER2_type 2380 2418 0 817 259 73 26 chr1 271483062 271483402 -10710262 - L1MC1 LINE L1 -1662 4484 4129 2264 98 0 0 chr1 271483410 271483706 -10709958 - AluSx SINE Alu -16 296 1 228 270 44 107 chr1 271484437 271484489 -10709175 - MER112 DNA MER1_type -1 259 205 1853 103 0 8 chr1 271484489 271484750 -10708914 + AluSg SINE Alu 42 300 -10 228 270 44 107 chr1 271484750 271484967 -10708697 - MER112 DNA MER1_type -55 205 7 192 283 0 38 chr1 271484970 271485023 -10708641 + L2 LINE L2 3144 3194 -78 281 284 57 0 chr1 271485099 271485187 -10708477 - L2 LINE L2 -38 3234 3142 697 131 7 33 chr1 271485271 271485424 -10708240 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 1332 142 18 0 chr1 271485426 271485652 -10708012 - AluSg/x SINE Alu 0 310 81 525 277 16 82 chr1 271485964 271486009 -10707655 - MER5B DNA MER1_type 0 178 132 2252 86 10 0 chr1 271486009 271486313 -10707351 - AluSp SINE Alu -6 307 1 525 277 16 82 chr1 271486313 271486451 -10707213 - MER5B DNA MER1_type -46 132 7 252 219 31 10 chr1 271486738 271486834 -10706830 + L1M4 LINE L1 4404 4501 -1645 292 298 95 0 chr1 271486961 271487045 -10706619 - MIR3 SINE MIR -6 202 111 2544 163 50 7 chr1 271487092 271487535 -10706129 - MLT1C LTR MaLR -5 462 1 2253 91 0 0 chr1 271487997 271488294 -10705370 + AluSx SINE Alu 1 297 -15 649 207 65 47 chr1 271488329 271488498 -10705166 + FRAM SINE Alu 1 172 -4 337 291 109 0 chr1 271488517 271488627 -10705037 - L1ME4a LINE L1 -148 5973 5852 421 269 99 60 chr1 271488658 271488732 -10704932 - MIR SINE MIR -3 259 189 2158 108 0 0 chr1 271488732 271489027 -10704637 - AluSx SINE Alu -17 295 1 421 269 99 60 chr1 271489027 271489193 -10704471 - MIR SINE MIR -73 189 8 338 259 89 15 chr1 271489366 271489501 -10704163 + MIR SINE MIR 25 169 -93 234 200 0 0 chr1 271489496 271489536 -10704128 + L2 LINE L2 3267 3306 -7 * 2030 143 0 0 chr1 271489600 271489901 -10703763 - AluSx SINE Alu -11 301 1 1931 149 54 35 chr1 271490498 271490866 -10702798 + THE1C LTR MaLR 1 375 0 1947 151 50 18 chr1 271491377 271491446 -10702218 + MER7A DNA MER2_type 1 66 -2972 1968 140 7 3 chr1 271491446 271491754 -10701910 - AluSg SINE Alu -1 309 1 1947 151 50 18 chr1 271491754 271492021 -10701643 + MER7A DNA MER2_type 66 346 0 2277 93 0 10 chr1 271492213 271492526 -10701138 - AluY SINE Alu -1 310 1 342 270 0 14 chr1 271492790 271492864 -10700800 - MIR3 SINE MIR -18 190 118 2253 92 0 0 chr1 271493108 271493402 -10700262 + AluSg SINE Alu 1 294 -16 2194 86 0 0 chr1 271493974 271494265 -10699399 - AluY SINE Alu -18 293 3 559 135 45 0 chr1 271494272 271494361 -10699303 - AluSg/x SINE Alu -20 292 200 209 204 37 37 chr1 271494864 271494918 -10698746 + CT-rich Low_complexity Low_complexity 3 56 0 1726 152 3 10 chr1 271495415 271495718 -10697946 + AluJb SINE Alu 3 303 -9 2140 98 0 16 chr1 271495718 271496023 -10697641 + AluSg SINE Alu 1 300 -10 432 305 151 10 chr1 271496257 271496588 -10697076 + L1MC4a LINE L1 5520 5822 -342 2083 122 6 0 chr1 271496810 271497121 -10696543 - AluSq SINE Alu 0 313 1 2035 99 7 3 chr1 271497791 271498074 -10695590 - AluSq SINE Alu -10 303 20 213 312 82 100 chr1 271498114 271498345 -10695319 + L2 LINE L2 3046 3272 0 1685 166 13 19 chr1 271498352 271498665 -10694999 - AluJo SINE Alu -1 311 1 2156 103 3 0 chr1 271498999 271499300 -10694364 - AluSx SINE Alu -10 302 1 1766 158 30 6 chr1 271499434 271499763 -10693901 - L1 LINE L1 -1096 5050 4714 1649 193 58 45 chr1 271500109 271500648 -10693016 - LTR54B LTR ERV1 0 510 2 218 291 23 23 chr1 271501037 271501123 -10692541 + MER5B DNA MER1_type 5 90 -88 1200 118 0 100 chr1 271501446 271501504 -10692160 - L1MB3 LINE L1 -1 6182 6120 1878 91 11 0 chr1 271501504 271501769 -10691895 - AluSx SINE Alu -44 268 1 1200 118 0 100 chr1 271501769 271501939 -10691725 - L1MB3 LINE L1 -63 6120 5977 294 340 54 20 chr1 271502115 271502262 -10691402 - L2 LINE L2 -165 3107 2956 925 157 13 0 chr1 271502432 271502585 -10691079 - FRAM SINE Alu -16 160 6 2197 110 0 0 chr1 271502602 271502911 -10690753 - AluSx SINE Alu -3 309 1 254 150 0 17 chr1 271504554 271504614 -10689050 + (TC)n Simple_repeat Simple_repeat 2 60 0 240 59 0 0 chr1 271504619 271504653 -10689011 + (CA)n Simple_repeat Simple_repeat 2 35 0 2269 82 7 0 chr1 271504966 271505271 -10688393 + AluY SINE Alu 2 308 -3 183 266 0 47 chr1 271505338 271505402 -10688262 - MIR3 SINE MIR -32 176 116 396 59 0 0 chr1 271505593 271505644 -10688020 + (CA)n Simple_repeat Simple_repeat 1 51 0 866 198 32 0 chr1 271505943 271506100 -10687564 - FRAM SINE Alu -4 162 1 469 234 73 24 chr1 271506123 271506247 -10687417 - L2 LINE L2 0 3313 3184 2192 74 14 0 chr1 271506520 271506804 -10686860 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr1 271506804 271506829 -10686835 + AT_rich Low_complexity Low_complexity 1 25 0 2018 125 3 0 chr1 271507370 271507658 -10686006 + AluSx SINE Alu 1 289 -23 207 0 0 0 chr1 271507667 271507690 -10685974 + (TAA)n Simple_repeat Simple_repeat 2 24 0 267 197 13 79 chr1 271507893 271507969 -10685695 + L1ME4a LINE L1 5979 6049 -72 406 35 0 35 chr1 271507976 271508033 -10685631 - AluSp/q SINE Alu -7 296 242 1154 51 0 0 chr1 271508033 271508170 -10685494 - AluSx SINE Alu -157 155 19 652 146 10 0 chr1 271508170 271508273 -10685391 - AluJo/FLAM SINE Alu -206 106 3 22 56 0 0 chr1 271508531 271508567 -10685097 + AT_rich Low_complexity Low_complexity 1 36 0 2113 116 3 10 chr1 271508774 271509084 -10684580 - AluSq SINE Alu -3 310 3 938 118 0 0 chr1 271509085 271509221 -10684443 - AluSq/x SINE Alu -177 136 1 653 210 10 118 chr1 271510502 271510697 -10682967 + MER5B DNA MER1_type 5 178 0 789 111 0 0 chr1 271510712 271510820 -10682844 - AluSg/x SINE Alu -17 295 188 472 232 110 19 chr1 271510866 271511021 -10682643 - MIR SINE MIR -15 247 79 761 266 171 25 chr1 271511227 271511630 -10682034 - L2 LINE L2 0 3313 2852 1732 152 0 24 chr1 271511674 271511971 -10681693 + AluJb SINE Alu 1 290 -22 701 176 17 0 chr1 271511996 271512115 -10681549 - AluJb SINE Alu -59 253 133 281 323 102 0 chr1 271512180 271512307 -10681357 - MIR SINE MIR -70 192 53 2143 98 0 7 chr1 271513029 271513361 -10680303 + AluSq SINE Alu 1 313 0 1989 123 7 3 chr1 271513661 271513961 -10679703 + AluSq SINE Alu 1 301 -12 1911 119 0 7 chr1 271514087 271514411 -10679253 + AluSq SINE Alu 1 322 0 1565 122 34 61 chr1 271514583 271514705 -10678959 + AluJo SINE Alu 1 125 -187 2186 101 3 0 chr1 271514705 271515003 -10678661 - AluSp SINE Alu -14 299 1 1565 122 34 61 chr1 271515003 271515175 -10678489 + AluJo SINE Alu 125 287 -25 336 228 35 48 chr1 271515189 271515334 -10678330 - L1ME4a LINE L1 -18 6103 5961 1461 94 0 0 chr1 271515412 271515604 -10678060 + AluY SINE Alu 1 192 -119 2062 129 10 0 chr1 271515999 271516309 -10677355 + AluSq SINE Alu 1 313 0 236 284 21 53 chr1 271516317 271516412 -10677252 + L1ME LINE L1 5545 5636 -485 249 33 0 0 chr1 271516538 271516568 -10677096 + (TG)n Simple_repeat Simple_repeat 1 30 0 405 219 24 12 chr1 271516586 271516668 -10676996 + L1MC4 LINE L1 6613 6695 -1347 2643 70 8 39 chr1 271516668 271516760 -10676904 + L1PB1 LINE L1 5781 5874 -277 2284 79 0 0 chr1 271516760 271517063 -10676601 - AluY SINE Alu -7 304 2 2643 70 8 39 chr1 271517063 271517353 -10676311 + L1PB1 LINE L1 5874 6151 0 1797 169 3 0 chr1 271517392 271517693 -10675971 + AluJb SINE Alu 1 302 -10 1554 196 14 7 chr1 271517942 271518238 -10675426 + AluJo SINE Alu 1 298 -14 360 0 0 0 chr1 271518275 271518315 -10675349 + (TA)n Simple_repeat Simple_repeat 2 41 0 627 234 129 35 chr1 271518368 271518654 -10675010 - L1ME4a LINE L1 -218 5903 5591 1869 132 0 50 chr1 271519659 271519978 -10673686 + AluJb SINE Alu 1 303 -9 2381 68 0 7 chr1 271520010 271520318 -10673346 + AluY SINE Alu 1 306 -5 607 101 0 0 chr1 271522820 271522909 -10670755 + AluSc SINE Alu 215 303 -6 2262 60 0 0 chr1 271523418 271523699 -10669965 + AluY SINE Alu 17 297 -14 2178 102 0 0 chr1 271523757 271524050 -10669614 + AluSx SINE Alu 1 293 -19 2112 98 3 0 chr1 271525605 271525901 -10667763 + AluSg1 SINE Alu 1 297 -12 25 65 0 0 chr1 271526086 271526132 -10667532 + AT_rich Low_complexity Low_complexity 1 46 0 1839 121 42 7 chr1 271526643 271526932 -10666732 + AluSx SINE Alu 1 299 -13 1744 161 7 13 chr1 271527430 271527740 -10665924 - AluJo SINE Alu -4 308 1 790 153 0 29 chr1 271527771 271527908 -10665756 + AluJb SINE Alu 2 134 -178 2120 88 6 31 chr1 271528361 271528678 -10664986 + AluSg SINE Alu 1 309 -1 1941 121 28 0 chr1 271529420 271529709 -10663955 - AluSx SINE Alu -15 297 1 1369 167 13 59 chr1 271530802 271531108 -10662556 + AluJb SINE Alu 6 297 -15 602 286 215 9 chr1 271531163 271531502 -10662162 + L2 LINE L2 2231 2639 -675 244 176 0 59 chr1 271531560 271531628 -10662036 + L1MC4 LINE L1 6640 6703 -1339 311 299 0 23 chr1 271531629 271531716 -10661948 + L1MC4 LINE L1 6619 6703 -1339 214 280 0 0 chr1 271531719 271531769 -10661895 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 463 213 0 53 chr1 271531770 271531958 -10661706 + (TATG)n Simple_repeat Simple_repeat 2 179 0 1969 94 0 0 chr1 271531967 271532223 -10661441 - AluSx SINE Alu -56 256 1 301 327 78 75 chr1 271532299 271532736 -10660928 + L2 LINE L2 2835 3272 0 447 228 0 9 chr1 271532940 271533054 -10660610 + L1MB5 LINE L1 6050 6162 -12 1165 187 24 0 chr1 271533135 271533344 -10660320 + AluJo SINE Alu 87 300 -12 471 78 0 0 chr1 271533344 271533408 -10660256 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 234 197 0 45 chr1 271533685 271533778 -10659886 + (CACCC)n Simple_repeat Simple_repeat 1 88 0 211 367 53 40 chr1 271533969 271534085 -10659579 + L2 LINE L2 1683 1803 -1511 2144 99 14 0 chr1 271534085 271534377 -10659287 + AluSx SINE Alu 1 296 -16 211 367 53 40 chr1 271534377 271534410 -10659254 + L2 LINE L2 1803 1834 -1480 1959 116 43 13 chr1 271535239 271535542 -10658122 - AluSx SINE Alu 0 312 1 834 161 68 19 chr1 271535579 271535741 -10657923 + FAM SINE Alu 6 175 -10 1746 155 7 26 chr1 271535743 271536053 -10657611 + AluJo SINE Alu 1 304 -8 1768 152 30 0 chr1 271536112 271536414 -10657250 - AluJo SINE Alu -1 311 1 1533 181 0 36 chr1 271536516 271536820 -10656844 + AluJo SINE Alu 5 297 -15 2105 112 3 0 chr1 271537600 271537894 -10655770 + AluSx SINE Alu 1 295 -17 1901 162 0 3 chr1 271537978 271538286 -10655378 + AluSx SINE Alu 1 307 -5 1326 136 174 30 chr1 271538402 271538689 -10654975 + AluJb SINE Alu 1 325 0 1998 134 7 0 chr1 271538857 271539148 -10654516 + AluSx SINE Alu 1 293 -19 2671 126 13 0 chr1 271539149 271539545 -10654119 + MER57A LTR ERV1 1 401 -2 2330 84 0 0 chr1 271539557 271539855 -10653809 + AluSx SINE Alu 1 298 -14 1701 163 7 17 chr1 271540203 271540504 -10653160 + AluJb SINE Alu 1 298 -14 765 272 35 0 chr1 271540730 271540903 -10652761 - MIR SINE MIR -46 216 38 349 268 76 27 chr1 271541032 271541182 -10652482 + L1MCa LINE L1 1167 2378 -4048 251 231 0 13 chr1 271541190 271541268 -10652396 + GA-rich Low_complexity Low_complexity 1 77 0 240 59 0 0 chr1 271541881 271541915 -10651749 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 659 73 0 0 chr1 271541947 271542029 -10651635 - AluSp SINE Alu -210 103 22 2075 104 0 3 chr1 271542060 271542348 -10651316 + AluSq SINE Alu 1 287 -26 252 0 0 0 chr1 271542355 271542383 -10651281 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 3308 198 15 73 chr1 271542676 271543705 -10649959 + LTR5 LTR ERVK 1 969 0 841 115 103 55 chr1 271543804 271543969 -10649695 + AluJb SINE Alu 137 309 -3 25 0 0 0 chr1 271543989 271544014 -10649650 + AT_rich Low_complexity Low_complexity 1 25 0 2180 96 0 0 chr1 271544014 271544306 -10649358 - AluSg SINE Alu -18 292 1 1777 137 23 7 chr1 271544642 271544942 -10648722 + AluJo SINE Alu 2 306 -6 2317 78 3 0 chr1 271545059 271545355 -10648309 + AluSc SINE Alu 1 297 -12 1212 141 8 50 chr1 271546043 271546284 -10647380 - AluJo SINE Alu -1 311 81 2331 48 7 7 chr1 271546284 271546577 -10647087 - AluY SINE Alu -18 293 1 3783 135 7 8 chr1 271546893 271547499 -10646165 - L1P LINE L1 -3194 2952 2348 759 296 38 61 chr1 271547950 271548478 -10645186 - MER34 LTR ERV1 -26 516 1 2032 108 0 35 chr1 271548872 271549186 -10644478 - AluSx SINE Alu -9 303 1 1849 139 4 0 chr1 271549691 271549972 -10643692 + AluSx SINE Alu 1 282 -30 1044 152 12 0 chr1 271550284 271550455 -10643209 - AluJ SINE Alu -3 309 137 212 0 36 0 chr1 271550455 271550483 -10643181 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 1959 110 16 19 chr1 271550498 271550808 -10642856 - AluSc SINE Alu 0 309 1 497 270 59 7 chr1 271551146 271551298 -10642366 - L2 LINE L2 0 3272 3113 220 303 79 0 chr1 271551472 271551548 -10642116 - MIR SINE MIR -59 203 122 549 236 165 47 chr1 271551567 271551779 -10641885 + Charlie2 DNA MER1_type 1 237 -2545 210 224 15 30 chr1 271551785 271551852 -10641812 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 355 190 10 120 chr1 271551852 271551952 -10641712 + L1MC4 LINE L1 6614 6702 -1340 340 299 35 0 chr1 271551945 271552032 -10641632 - L1MC4 LINE L1 -1339 6703 6614 * 313 247 11 45 chr1 271552038 271552127 -10641537 + L1MC4 LINE L1 6618 6703 -1339 1551 154 36 4 chr1 271552128 271552407 -10641257 - AluJo SINE Alu -24 288 1 885 180 43 113 chr1 271552528 271552995 -10640669 + Charlie2 DNA MER1_type 2239 2672 -190 864 162 0 0 chr1 271552995 271553131 -10640533 - AluJ SINE Alu -176 136 1 582 202 101 0 chr1 271553131 271553309 -10640355 + Charlie2 DNA MER1_type 2660 2855 -7 308 349 87 6 chr1 271553674 271553846 -10639818 - MER91A DNA MER1_type -10 186 1 312 206 31 31 chr1 271554249 271554346 -10639318 + L1MC5 LINE L1 5583 5679 -2129 1746 174 7 0 chr1 271554389 271554759 -10638905 + AluJb SINE Alu 1 372 0 525 195 31 44 chr1 271554761 271554944 -10638720 + L1MC5 LINE L1 6985 7233 -634 658 216 53 18 chr1 271555139 271555310 -10638354 + L1MC5 LINE L1 7727 7903 -58 722 92 9 0 chr1 271555329 271555438 -10638226 - LTR9B LTR ERV1 -84 560 451 21 0 0 0 chr1 271555512 271555533 -10638131 + AT_rich Low_complexity Low_complexity 1 21 0 2247 88 13 0 chr1 271555842 271556148 -10637516 - AluSg SINE Alu 0 310 1 1820 163 0 7 chr1 271557287 271557582 -10636082 + AluJo SINE Alu 3 295 -17 240 157 39 0 chr1 271557785 271557836 -10635828 + L2 LINE L2 1615 1667 -1647 324 246 31 4 chr1 271557840 271557995 -10635669 + MER63 DNA MER1_type 1 1686 -2 552 252 120 34 chr1 271557996 271558127 -10635537 - MER112 DNA MER1_type 0 256 138 2207 117 0 0 chr1 271558127 271558435 -10635229 - AluSx SINE Alu -4 308 1 552 252 120 34 chr1 271558435 271558537 -10635127 - MER112 DNA MER1_type -118 138 3 522 269 314 10 chr1 271558580 271558978 -10634686 + L2 LINE L2 1698 2216 -1098 518 276 65 53 chr1 271558954 271559200 -10634464 + L2 LINE L2 2831 3079 -234 * 902 275 121 49 chr1 271559273 271559725 -10633939 - L2 LINE L2 -78 3235 2728 1816 134 10 17 chr1 271559725 271560023 -10633641 + AluSx SINE Alu 1 296 -16 902 275 121 49 chr1 271560023 271560166 -10633498 - L2 LINE L2 -585 2728 2597 208 189 27 0 chr1 271560224 271560261 -10633403 + L2 LINE L2 3264 3301 -12 1073 165 19 29 chr1 271560500 271560706 -10632958 + AluJo SINE Alu 1 204 -108 226 296 148 74 chr1 271560800 271560962 -10632702 - L2 LINE L2 -9 3263 3090 243 191 324 19 chr1 271563413 271563518 -10630146 - MIR SINE MIR 0 262 126 23 24 0 24 chr1 271563570 271563584 -10630080 + AT_rich Low_complexity Low_complexity 1 14 -26 2209 101 0 3 chr1 271563584 271563881 -10629783 - AluSx SINE Alu -16 296 1 23 24 0 24 chr1 271563881 271563907 -10629757 + AT_rich Low_complexity Low_complexity 14 40 0 27 0 0 0 chr1 271564058 271564085 -10629579 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr1 271565298 271565318 -10628346 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1903 148 0 3 chr1 271565910 271566213 -10627451 - AluSx SINE Alu -10 302 1 2232 79 0 3 chr1 271566278 271566570 -10627094 + AluSg SINE Alu 1 291 -19 1456 148 126 11 chr1 271566723 271566994 -10626670 - AluJo SINE Alu -10 302 1 1566 187 3 7 chr1 271567167 271567467 -10626197 + AluJb SINE Alu 1 299 -13 2151 112 0 0 chr1 271567475 271567778 -10625886 + AluSx SINE Alu 3 305 -7 2082 104 3 22 chr1 271567808 271568126 -10625538 - AluSx SINE Alu 0 312 1 541 306 143 0 chr1 271569202 271569467 -10624197 - L1MC4a LINE L1 -1899 5909 5607 2311 49 0 7 chr1 271569473 271569798 -10623866 - AluY SINE Alu 0 323 1 2761 172 67 8 chr1 271569959 271570483 -10623181 - MER68 LTR ERV1 -7 555 1 188 355 90 15 chr1 271570544 271570731 -10622933 + L2 LINE L2 2188 2392 -922 2350 78 0 7 chr1 271570731 271571038 -10622626 + AluSq SINE Alu 1 305 -8 188 355 90 15 chr1 271571038 271571050 -10622614 + L2 LINE L2 2392 2402 -912 2100 101 10 0 chr1 271571504 271571800 -10621864 - AluSp SINE Alu -14 299 1 870 222 64 5 chr1 271571824 271572027 -10621637 - LTR67 LTR ERVL 0 557 343 24 32 0 0 chr1 271572616 271572647 -10621017 + AT_rich Low_complexity Low_complexity 1 31 0 1758 101 52 8 chr1 271572981 271573249 -10620415 + AluSx SINE Alu 27 306 -6 273 216 120 50 chr1 271573320 271573474 -10620190 - L1ME4a LINE L1 -3 6118 5976 415 138 12 0 chr1 271573474 271573554 -10620110 - L1MA3 LINE L1 0 6305 6225 273 216 120 50 chr1 271573554 271573682 -10619982 - L1ME4a LINE L1 -145 5976 5816 229 129 0 0 chr1 271573963 271573994 -10619670 + L1PA15-16 LINE L1 1396 1426 -5423 349 284 206 20 chr1 271574085 271574289 -10619375 - L2 LINE L2 -1 3271 3030 2424 41 3 0 chr1 271575186 271575479 -10618185 - AluY SINE Alu -17 294 1 1466 133 67 30 chr1 271576008 271576278 -10617386 + AluJo SINE Alu 29 308 -4 609 301 17 86 chr1 271576480 271576889 -10616775 - MLT1J LTR MaLR -94 417 37 315 203 72 0 chr1 271577425 271577494 -10616170 - Charlie8 DNA MER1_type -2187 230 157 210 368 21 11 chr1 271578033 271578128 -10615536 + L2 LINE L2 3137 3232 -40 201 284 119 0 chr1 271578209 271578276 -10615388 - MIR SINE MIR -96 166 92 464 284 114 24 chr1 271579124 271579176 -10614488 - L1ME4a LINE L1 -2148 5660 5614 1924 183 9 14 chr1 271579176 271579526 -10614138 + MER7A DNA MER2_type 1 346 0 464 284 114 24 chr1 271579526 271579684 -10613980 - L1ME4a LINE L1 -2194 5614 5431 27 62 0 0 chr1 271579729 271579777 -10613887 + AT_rich Low_complexity Low_complexity 1 48 0 1608 158 22 11 chr1 271580375 271580653 -10613011 + AluJo SINE Alu 9 289 -23 221 311 33 0 chr1 271581533 271581623 -10612041 - L2 LINE L2 -25 3247 3155 2019 108 13 33 chr1 271582110 271582415 -10611249 - AluSx SINE Alu -13 299 1 257 290 104 16 chr1 271584228 271584411 -10609253 - HAL1b LINE L1 -5 1343 1145 211 125 0 0 chr1 271586590 271586622 -10607042 - L2 LINE L2 -7 3306 3275 25 31 0 0 chr1 271589156 271589188 -10604476 + AT_rich Low_complexity Low_complexity 1 32 0 346 206 147 82 chr1 271589560 271589730 -10603934 + MIR SINE MIR 33 213 -49 26 0 0 0 chr1 271592243 271592269 -10601395 + AT_rich Low_complexity Low_complexity 1 26 0 2216 114 0 0 chr1 271592274 271592573 -10601091 + AluSx SINE Alu 1 299 -13 452 278 149 21 chr1 271595734 271595928 -10597736 - MIR SINE MIR -12 250 32 943 156 6 18 chr1 271596100 271596267 -10597397 - FRAM SINE Alu -11 165 1 309 283 130 33 chr1 271597393 271597577 -10596087 - MIR SINE MIR -36 226 25 287 130 19 0 chr1 271598377 271598431 -10595233 + (CA)n Simple_repeat Simple_repeat 1 55 0 284 208 52 13 chr1 271598879 271598956 -10594708 + L1MC4 LINE L1 6983 7062 -980 1135 261 108 12 chr1 271598966 271599365 -10594299 + L1MC4 LINE L1 7606 8042 0 464 287 71 32 chr1 271599912 271600222 -10593442 - L1ME3A LINE L1 -303 5867 5546 229 132 132 19 chr1 271600344 271600397 -10593267 - L1ME3A LINE L1 -987 5372 5314 291 303 117 36 chr1 271600474 271600781 -10592883 - L1ME3A LINE L1 -1053 5093 4762 230 311 29 38 chr1 271600848 271601086 -10592578 - L1ME3A LINE L1 -1559 4587 4352 300 283 62 118 chr1 271601278 271601435 -10592229 - L1ME3A LINE L1 -2032 4114 3983 2201 65 34 14 chr1 271601435 271601726 -10591938 - AluY SINE Alu 0 311 15 300 283 62 118 chr1 271601726 271601890 -10591774 - L1ME3A LINE L1 -2163 3983 3811 1866 157 3 10 chr1 271602001 271602301 -10591363 + AluJo SINE Alu 1 298 -14 486 313 23 47 chr1 271602309 271602523 -10591141 - L1ME LINE L1 -398 5772 5564 725 198 25 0 chr1 271603500 271603621 -10590043 - FLAM_A SINE Alu -9 124 1 284 214 87 95 chr1 271604572 271604698 -10588966 + MARNA DNA Mariner 319 443 -143 1398 183 45 14 chr1 271605156 271605446 -10588218 - AluJo SINE Alu -13 299 1 234 295 86 38 chr1 271605474 271605579 -10588085 - L2 LINE L2 -11 3302 3193 2164 111 7 0 chr1 271605597 271605894 -10587770 + AluSq SINE Alu 1 299 -14 216 86 0 0 chr1 271607054 271607089 -10586575 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 271607112 271607133 -10586531 + AT_rich Low_complexity Low_complexity 1 21 0 1208 176 0 63 chr1 271607345 271607584 -10586080 - AluJo SINE Alu -21 291 68 3812 154 33 38 chr1 271607641 271607750 -10585914 + L1MB7 LINE L1 5273 5381 -803 3812 147 36 40 chr1 271607750 271608175 -10585489 + L1MB7 LINE L1 5430 5855 -329 2360 57 0 3 chr1 271608175 271608481 -10585183 + AluY SINE Alu 1 305 0 3812 147 36 40 chr1 271608481 271608607 -10585057 + L1MB7 LINE L1 5855 5980 -204 267 114 0 0 chr1 271608607 271608651 -10585013 + (TGG)n Simple_repeat Simple_repeat 2 45 0 3812 147 36 40 chr1 271608651 271608839 -10584825 + L1MB7 LINE L1 5980 6168 -16 3812 154 33 38 chr1 271608839 271608871 -10584793 + L1MB7 LINE L1 5381 6168 -16 429 352 47 0 chr1 271609230 271609423 -10584241 - MIR SINE MIR -32 230 29 313 257 9 18 chr1 271610172 271610285 -10583379 + (TA)n Simple_repeat Simple_repeat 2 113 0 528 262 107 26 chr1 271611606 271611903 -10581761 + L1MC5 LINE L1 7555 8001 -41 21 71 0 0 chr1 271612177 271612219 -10581445 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr1 271612727 271612756 -10580908 + AT_rich Low_complexity Low_complexity 1 29 0 1144 208 19 14 chr1 271613483 271613699 -10579965 + MER58A DNA MER1_type 2 218 -6 344 227 94 86 chr1 271615308 271615361 -10578303 - L1MC4a LINE L1 -1883 5925 5874 1776 92 4 17 chr1 271615361 271615599 -10578065 - AluSx SINE Alu -57 255 21 344 227 94 86 chr1 271615599 271615655 -10578009 - L1MC4a LINE L1 -1934 5874 5820 2475 76 3 0 chr1 271615655 271615956 -10577708 - AluSp SINE Alu -11 302 1 344 227 94 86 chr1 271615956 271616101 -10577563 - L1MC4a LINE L1 -1988 5820 5668 382 306 97 16 chr1 271616669 271616979 -10576685 - L1 LINE L1 -2203 3943 3609 1381 154 97 4 chr1 271617260 271617507 -10576157 + Tigger4(Zombi) DNA MER2_type 1 270 -2461 270 237 133 30 chr1 271617676 271617811 -10575853 + L1MC4a LINE L1 5760 5908 -1900 201 158 0 0 chr1 271618097 271618135 -10575529 + A-rich Low_complexity Low_complexity 2 39 0 2079 145 0 0 chr1 271618688 271618985 -10574679 - AluJb SINE Alu -15 297 1 2333 92 0 0 chr1 271618993 271619286 -10574378 - AluSc SINE Alu -16 293 1 32 0 0 0 chr1 271619763 271619795 -10573869 + AT_rich Low_complexity Low_complexity 1 32 0 1693 171 27 7 chr1 271620472 271620764 -10572900 + AluJb SINE Alu 1 298 -14 287 179 0 13 chr1 271621136 271621214 -10572450 + GA-rich Low_complexity Low_complexity 3 79 0 228 304 25 0 chr1 271621540 271621619 -10572045 + MIR SINE MIR 182 262 0 2427 81 0 3 chr1 271621698 271621996 -10571668 - AluSc SINE Alu -12 297 1 2316 109 0 0 chr1 271622388 271622690 -10570974 - AluSx SINE Alu -10 302 1 2074 115 3 7 chr1 271622694 271623012 -10570652 - AluSq SINE Alu 0 317 1 249 217 25 48 chr1 271623073 271623197 -10570467 + L1MC/D LINE L1 5760 5874 -424 2184 101 0 7 chr1 271623314 271623602 -10570062 + AluSx SINE Alu 1 286 -26 216 302 56 50 chr1 271623977 271624156 -10569508 + MIR SINE MIR 11 190 -72 2278 96 0 10 chr1 271624215 271624508 -10569156 + AluSc SINE Alu 1 290 -19 2393 102 0 6 chr1 271624760 271625074 -10568590 - AluSx SINE Alu 0 312 1 254 273 0 45 chr1 271625355 271625443 -10568221 - MER94 DNA DNA -50 84 1 743 199 8 0 chr1 271625454 271625585 -10568079 + FRAM SINE Alu 22 153 -23 26 0 0 0 chr1 271626100 271626126 -10567538 + AT_rich Low_complexity Low_complexity 1 26 0 1679 214 111 38 chr1 271626390 271627061 -10566603 - MER21B LTR ERV1 -54 809 19 325 243 0 14 chr1 271627083 271627153 -10566511 - MER21B LTR ERV1 -773 90 22 837 110 0 0 chr1 271627158 271627312 -10566352 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 1429 151 4 0 chr1 271627312 271627537 -10566127 - AluJo SINE Alu -5 307 82 808 166 7 0 chr1 271628263 271628402 -10565262 + FLAM_C SINE Alu 1 140 -3 2174 126 0 3 chr1 271628412 271628713 -10564951 + AluSq SINE Alu 1 300 -13 464 216 5 161 chr1 271629132 271629198 -10564466 + MER91B DNA MER1_type 23 98 -92 897 152 8 0 chr1 271629198 271629330 -10564334 + FLAM_C SINE Alu 1 133 0 464 216 5 161 chr1 271629330 271629462 -10564202 + MER91B DNA MER1_type 98 190 0 2206 138 0 0 chr1 271630051 271630362 -10563302 - AluSx SINE Alu -1 311 1 1425 200 0 4 chr1 271630558 271630808 -10562856 + AluJo SINE Alu 14 262 -50 674 150 75 0 chr1 271630812 271630932 -10562732 + MLT1A2 LTR MaLR 246 374 0 348 200 17 7 chr1 271630935 271631026 -10562638 + MLT1A2-int LTR MaLR 4 94 -1277 728 218 34 50 chr1 271631273 271631452 -10562212 - MER45A DNA AcHobo -2 176 1 1802 138 47 7 chr1 271631512 271631809 -10561855 - AluJb SINE Alu -3 309 1 476 164 301 20 chr1 271631840 271631986 -10561678 + MER5A DNA MER1_type 2 188 -1 206 241 205 27 chr1 271632222 271632334 -10561330 - MIR3 SINE MIR -66 142 11 2452 87 3 3 chr1 271633184 271633493 -10560171 + AluSx SINE Alu 1 309 -3 5410 183 32 15 chr1 271633628 271634726 -10558938 + L1MC2 LINE L1 4992 6111 -233 2395 103 0 0 chr1 271634726 271635028 -10558636 + AluSx SINE Alu 1 302 -10 5410 183 32 15 chr1 271635028 271635245 -10558419 + L1MC2 LINE L1 6111 6323 -21 1859 145 0 32 chr1 271635756 271636066 -10557598 + AluJo SINE Alu 1 300 -12 584 274 49 10 chr1 271636976 271637180 -10556484 + MIR SINE MIR 41 252 -10 21 0 0 0 chr1 271637563 271637584 -10556080 + AT_rich Low_complexity Low_complexity 1 21 0 215 163 163 0 chr1 271637593 271637642 -10556022 + L2 LINE L2 3216 3272 0 389 300 0 0 chr1 271637711 271637801 -10555863 - L2 LINE L2 0 3313 3224 523 304 6 17 chr1 271639930 271640111 -10553553 + MIR3 SINE MIR 16 194 -14 289 234 16 0 chr1 271640474 271640538 -10553126 - L2 LINE L2 -1 3271 3207 357 62 0 0 chr1 271640867 271640915 -10552749 + (CA)n Simple_repeat Simple_repeat 1 48 0 2024 82 0 50 chr1 271641945 271642263 -10551401 - AluY SINE Alu 0 319 16 21 36 0 0 chr1 271642984 271643012 -10550652 + AT_rich Low_complexity Low_complexity 1 28 0 1065 310 66 21 chr1 271643184 271643753 -10549911 + L1ME3 LINE L1 5356 5951 -211 23 0 0 0 chr1 271644010 271644033 -10549631 + AT_rich Low_complexity Low_complexity 1 23 0 1483 180 70 12 chr1 271644922 271645266 -10548398 - MLT1A1 LTR MaLR -1 364 1 186 348 123 14 chr1 271645266 271645404 -10548260 + L2 LINE L2 2470 2622 -692 210 313 104 43 chr1 271645791 271645906 -10547758 + L2 LINE L2 3143 3264 -8 262 265 43 43 chr1 271645944 271646061 -10547603 + L2 LINE L2 3193 3309 -4 180 0 0 0 chr1 271646224 271646244 -10547420 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 928 156 44 12 chr1 271646374 271646534 -10547130 + FRAM SINE Alu 1 165 -1 2281 82 20 0 chr1 271647732 271648024 -10545640 + AluSp SINE Alu 1 298 -15 212 81 81 0 chr1 271648465 271648502 -10545162 + L2 LINE L2 3265 3304 -9 2325 110 7 0 chr1 271649584 271649894 -10543770 - AluSx SINE Alu 0 312 1 269 240 173 10 chr1 271650140 271650244 -10543420 - L2 LINE L2 0 3313 3193 403 301 14 0 chr1 271651679 271651825 -10541839 + MIR SINE MIR 80 227 -35 2453 125 75 8 chr1 271652224 271652623 -10541041 - MSTB LTR MaLR 0 426 1 237 158 26 0 chr1 271652775 271652813 -10540851 + MLT1D LTR MaLR 5 43 -462 872 165 55 0 chr1 271652813 271652995 -10540669 + L1MA8 LINE L1 5859 6050 -241 1162 142 107 27 chr1 271652995 271653220 -10540444 + MLT1D LTR MaLR 255 497 -8 232 368 37 0 chr1 271654352 271654488 -10539176 - MIR SINE MIR -3 259 119 242 259 0 35 chr1 271654739 271654824 -10538840 + CT-rich Low_complexity Low_complexity 2 83 0 243 291 0 64 chr1 271655098 271655208 -10538456 + MIR3 SINE MIR 5 107 -101 626 235 81 20 chr1 271657623 271657915 -10535749 - L1M LINE L1 -743 5403 5100 1248 101 112 0 chr1 271658200 271658379 -10535285 + MER30 DNA MER1_type 1 199 -31 2164 76 17 31 chr1 271659550 271659862 -10533802 + AluY SINE Alu 1 308 0 2231 125 0 0 chr1 271661491 271661802 -10531862 + AluSq SINE Alu 1 311 -2 938 189 72 106 chr1 271662538 271662754 -10530910 - MLT1A2 LTR MaLR 0 374 175 2200 128 0 0 chr1 271662754 271663050 -10530614 - AluSx SINE Alu -16 296 1 938 189 72 106 chr1 271663050 271663220 -10530444 - MLT1A2 LTR MaLR -199 175 1 1860 184 0 0 chr1 271663235 271663545 -10530119 - AluSx SINE Alu -2 310 1 6553 189 99 55 chr1 271663633 271665315 -10528349 + MER52A LTR ERV1 1 1755 0 654 289 0 6 chr1 271665605 271665771 -10527893 + MIR SINE MIR 7 171 -91 2067 142 0 7 chr1 271665807 271666110 -10527554 - AluSx SINE Alu -11 301 1 1832 175 3 7 chr1 271666623 271666920 -10526744 + AluJo SINE Alu 1 296 -16 203 95 48 0 chr1 271667183 271667225 -10526439 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 2429 96 0 0 chr1 271667508 271667820 -10525844 - AluSx SINE Alu 0 312 1 264 237 13 53 chr1 271667839 271667938 -10525726 + MER39 LTR ERV1 1 96 -446 * 1501 175 98 96 chr1 271667936 271668445 -10525219 + LTR48B LTR ERV1 134 643 -1 345 317 58 8 chr1 271668445 271668565 -10525099 + L2 LINE L2 3145 3270 -2 2166 113 3 10 chr1 271669274 271669584 -10524080 - AluSx SINE Alu -4 308 1 874 118 7 7 chr1 271670458 271670594 -10523070 + L1M3 LINE L1 5648 5783 -400 415 281 78 30 chr1 271670621 271670788 -10522876 + L1MEd LINE L1 458 632 -5487 * 1451 137 24 43 chr1 271670756 271671037 -10522627 + L1MB3 LINE L1 5742 6014 -152 1407 190 15 45 chr1 271671060 271671416 -10522248 - L1MB4 LINE L1 -119 6061 5707 1650 118 75 47 chr1 271671430 271671709 -10521955 - AluJb SINE Alu -25 287 1 540 287 66 6 chr1 271671709 271671890 -10521774 - MIR SINE MIR -58 204 13 272 357 0 0 chr1 271673021 271673133 -10520531 - L2 LINE L2 -396 2917 2806 333 231 0 83 chr1 271673136 271673244 -10520420 - MER5B DNA MER1_type -17 161 63 1354 265 160 7 chr1 271673271 271673810 -10519854 - L2 LINE L2 -508 2806 2186 360 267 200 7 chr1 271673838 271673988 -10519676 + MER5A DNA MER1_type 9 187 -2 319 319 0 30 chr1 271673993 271674128 -10519536 - L2 LINE L2 -1147 2167 2037 749 181 0 8 chr1 271674922 271675049 -10518615 + FLAM_C SINE Alu 1 126 -7 1259 133 22 31 chr1 271675932 271676157 -10517507 - Tigger1 DNA MER2_type 0 2418 2196 365 364 67 11 chr1 271676319 271676690 -10516974 + L1MB4 LINE L1 5383 5774 -347 24 53 0 0 chr1 271677293 271677331 -10516333 + AT_rich Low_complexity Low_complexity 1 38 0 2221 131 0 0 chr1 271677896 271678208 -10515456 - AluSx SINE Alu 0 312 1 585 224 58 95 chr1 271678710 271679005 -10514659 + L1MB4 LINE L1 5897 6180 0 475 131 12 12 chr1 271679008 271679092 -10514572 + L1MB8 LINE L1 6093 6176 -2 216 185 0 74 chr1 271679096 271679150 -10514514 + MIR SINE MIR 209 258 -4 2282 99 14 0 chr1 271679823 271680115 -10513549 + AluSx SINE Alu 5 300 -12 28 29 0 0 chr1 271680225 271680260 -10513404 + AT_rich Low_complexity Low_complexity 1 35 0 11458 117 34 27 chr1 271681099 271682904 -10510760 - Tigger1 DNA MER2_type -600 1818 1 322 365 26 0 chr1 271682984 271683099 -10510565 + MIR SINE MIR 27 144 -118 233 200 0 67 chr1 271683137 271683212 -10510452 + A-rich Low_complexity Low_complexity 1 70 0 1198 202 252 22 chr1 271683843 271684165 -10509499 + MSTD LTR MaLR 1 396 0 201 361 202 14 chr1 271684401 271684747 -10508917 + L2 LINE L2 2394 2810 -504 2691 95 34 14 chr1 271684747 271685104 -10508560 + THE1B LTR MaLR 1 364 0 261 326 0 0 chr1 271685309 271685404 -10508260 + L2 LINE L2 2965 3059 -254 181 273 0 18 chr1 271685622 271685677 -10507987 + L2 LINE L2 3256 3309 -4 21 0 0 0 chr1 271686346 271686367 -10507297 + AT_rich Low_complexity Low_complexity 1 21 0 250 217 0 0 chr1 271687782 271687828 -10505836 + L2 LINE L2 3209 3254 -18 303 122 0 0 chr1 271689329 271689378 -10504286 + (A)n Simple_repeat Simple_repeat 1 49 0 291 256 295 0 chr1 271689419 271689575 -10504089 + MIR SINE MIR 13 214 -48 249 200 31 0 chr1 271689609 271689674 -10503990 + L1MA8 LINE L1 6221 6287 -4 1968 110 3 35 chr1 271689983 271690273 -10503391 - AluSx SINE Alu -23 289 9 951 166 6 12 chr1 271690442 271690605 -10503059 + L1MB3 LINE L1 6014 6175 -8 1847 147 41 10 chr1 271690620 271690912 -10502752 + AluJb SINE Alu 1 301 -11 1996 223 68 112 chr1 271691914 271691942 -10501722 - L1MEc LINE L1 -1783 4432 4404 1591 193 7 17 chr1 271691942 271692237 -10501427 - AluJo SINE Alu -20 292 1 1996 223 68 112 chr1 271692237 271692666 -10500998 - L1MEc LINE L1 -1811 4404 3958 2264 111 16 0 chr1 271692666 271692972 -10500692 - AluSq SINE Alu -2 311 1 1996 223 68 112 chr1 271692972 271693371 -10500293 - L1MEc LINE L1 -2257 3958 3631 2453 79 7 0 chr1 271693371 271693676 -10499988 + AluSp SINE Alu 1 307 -6 1996 223 68 112 chr1 271693676 271693914 -10499750 - L1MEc LINE L1 -2584 3631 3384 880 171 19 13 chr1 271693943 271694101 -10499563 + LTR40b LTR ERVL 302 460 -2 3259 238 68 43 chr1 271694103 271695003 -10498661 - L1MEc LINE L1 -4004 2392 1516 2355 94 0 0 chr1 271695003 271695301 -10498363 - AluSx SINE Alu -14 298 1 3259 238 68 43 chr1 271695301 271695607 -10498057 - L1MEc LINE L1 -4880 1516 1150 2535 41 0 0 chr1 271695607 271695898 -10497766 + AluY SINE Alu 1 291 -20 3259 238 68 43 chr1 271695898 271695945 -10497719 - L1MEc LINE L1 -5246 1150 1106 287 283 92 50 chr1 271695948 271696068 -10497596 - L1MEc LINE L1 -5549 656 532 548 83 0 12 chr1 271696102 271696186 -10497478 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 2360 115 0 0 chr1 271696216 271696528 -10497136 - AluSx SINE Alu 0 312 1 397 322 40 26 chr1 271696804 271696956 -10496708 - MIR SINE MIR -56 206 53 221 274 32 0 chr1 271697115 271697177 -10496487 - MER5A DNA MER1_type -2 187 124 317 326 87 65 chr1 271697384 271697460 -10496204 - MIR3 SINE MIR -18 190 117 2183 124 0 7 chr1 271697460 271697766 -10495898 + AluSq SINE Alu 1 304 -9 317 326 87 65 chr1 271697766 271697873 -10495791 - MIR3 SINE MIR -91 117 3 293 313 61 0 chr1 271697896 271697995 -10495669 + MIR3 SINE MIR 88 192 -16 31 0 0 0 chr1 271698363 271698394 -10495270 + AT_rich Low_complexity Low_complexity 1 31 0 1693 171 27 7 chr1 271699071 271699363 -10494301 + AluJb SINE Alu 1 298 -14 287 179 0 13 chr1 271699735 271699813 -10493851 + GA-rich Low_complexity Low_complexity 3 79 0 228 304 25 0 chr1 271700139 271700218 -10493446 + MIR SINE MIR 182 262 0 2383 80 3 7 chr1 271700294 271700594 -10493070 - AluSx SINE Alu -13 299 1 4327 187 29 13 chr1 271700594 271701692 -10491972 - L1MC2 LINE L1 -243 6101 4992 2438 87 3 3 chr1 271701827 271702136 -10491528 - AluSx SINE Alu -3 309 1 235 250 198 26 chr1 271702986 271703102 -10490562 + MIR3 SINE MIR 11 146 -62 525 164 301 20 chr1 271703334 271703480 -10490184 - MER5A DNA MER1_type -1 188 2 1740 139 46 17 chr1 271703511 271703813 -10489851 + AluJb SINE Alu 1 311 -1 756 218 34 50 chr1 271703868 271704047 -10489617 + MER45A DNA AcHobo 1 176 -2 349 200 17 7 chr1 271704294 271704385 -10489279 - MLT1A2-int LTR MaLR -1277 94 4 673 150 75 0 chr1 271704388 271704508 -10489156 - MLT1A2 LTR MaLR 0 374 246 1413 200 0 4 chr1 271704512 271704762 -10488902 - AluJo SINE Alu -50 262 14 2167 145 0 0 chr1 271704958 271705269 -10488395 + AluSx SINE Alu 1 311 -1 470 217 5 157 chr1 271705858 271705989 -10487675 - MER91B DNA MER1_type 0 190 97 897 152 8 0 chr1 271705989 271706121 -10487543 - FLAM_C SINE Alu 0 133 1 470 217 5 157 chr1 271706121 271706187 -10487477 - MER91B DNA MER1_type -93 97 23 2174 126 0 3 chr1 271706606 271706907 -10486757 - AluSq SINE Alu -13 300 1 808 166 7 0 chr1 271706917 271707056 -10486608 - FLAM_C SINE Alu -3 140 1 1429 151 4 0 chr1 271707782 271708007 -10485657 + AluJo SINE Alu 82 307 -5 749 110 7 0 chr1 271708007 271708152 -10485512 + (GGAA)n Simple_repeat Simple_repeat 1 146 0 325 243 0 14 chr1 271708157 271708227 -10485437 + MER21B LTR ERV1 22 90 -773 1668 216 111 38 chr1 271708249 271708920 -10484744 + MER21B LTR ERV1 19 809 -54 26 0 0 0 chr1 271709184 271709210 -10484454 + AT_rich Low_complexity Low_complexity 1 26 0 743 199 8 0 chr1 271709725 271709856 -10483808 - FRAM SINE Alu -23 153 22 254 273 0 45 chr1 271709867 271709955 -10483709 + MER94 DNA DNA 1 84 -50 2550 72 0 0 chr1 271710236 271710542 -10483122 + AluSx SINE Alu 1 306 -6 698 291 43 8 chr1 271710549 271710783 -10482881 - L1MCa LINE L1 -2590 3836 3595 880 171 19 13 chr1 271710812 271710970 -10482694 + LTR40b LTR ERVL 302 460 -2 3089 230 71 7 chr1 271710972 271711871 -10481793 - L1MCa LINE L1 -4004 2603 1484 2368 94 0 0 chr1 271711873 271712171 -10481493 - AluSx SINE Alu -14 298 1 397 322 40 26 chr1 271712447 271712599 -10481065 - MIR SINE MIR -56 206 53 221 274 32 0 chr1 271712758 271712820 -10480844 - MER5A DNA MER1_type -2 187 124 265 328 25 76 chr1 271713027 271713103 -10480561 - MIR3 SINE MIR -18 190 112 2008 148 0 16 chr1 271713103 271713421 -10480243 + AluSq SINE Alu 1 313 0 265 328 25 76 chr1 271713421 271713542 -10480122 - MIR3 SINE MIR -96 112 3 293 313 61 0 chr1 271713565 271713664 -10480000 + MIR3 SINE MIR 88 192 -16 297 218 0 0 chr1 271714421 271714476 -10479188 - FLAM_A SINE Alu -5 128 74 1907 164 3 3 chr1 271714920 271715244 -10478420 + AluJo SINE Alu 1 312 0 465 345 28 69 chr1 271715551 271715913 -10477751 + L2 LINE L2 2926 3272 0 183 325 104 13 chr1 271716258 271716335 -10477329 + MIR SINE MIR 1 84 -178 192 259 93 0 chr1 271716368 271716422 -10477242 - L2 LINE L2 -20 3293 3235 188 333 14 0 chr1 271716422 271716494 -10477170 + MIR SINE MIR 190 262 0 2232 123 0 3 chr1 271717488 271717788 -10475876 + AluSx SINE Alu 1 299 -13 309 267 33 0 chr1 271717820 271717910 -10475754 + L1MC4a LINE L1 5816 5908 -1900 344 266 130 19 chr1 271718353 271718507 -10475157 + L3 LINE CR1 898 1068 -509 247 263 105 21 chr1 271718785 271718880 -10474784 - L1MC/D LINE L1 -2153 5655 5553 384 270 69 40 chr1 271719197 271719255 -10474409 + MIR SINE MIR 74 129 -133 1245 215 47 27 chr1 271719255 271719553 -10474111 - AluJb SINE Alu -8 304 1 384 270 69 40 chr1 271719553 271719668 -10473996 + MIR SINE MIR 129 252 -10 227 210 48 65 chr1 271719757 271719819 -10473845 + L3 LINE CR1 1285 1345 -232 508 206 125 7 chr1 271719848 271719984 -10473680 - MER69A DNA AcHobo -22 155 4 35 0 0 0 chr1 271720087 271720122 -10473542 + AT_rich Low_complexity Low_complexity 1 35 0 228 244 0 0 chr1 271720146 271720187 -10473477 + L3 LINE CR1 1501 1541 -36 659 259 58 24 chr1 271720747 271720952 -10472712 + MIR SINE MIR 47 258 -4 21 0 0 0 chr1 271721089 271721110 -10472554 + AT_rich Low_complexity Low_complexity 1 21 0 3110 239 65 18 chr1 271721348 271722244 -10471420 - L1ME1 LINE L1 -5 6230 5290 1028 209 17 52 chr1 271722243 271722530 -10471134 - L1ME1 LINE L1 -2362 3853 3577 * 2126 212 96 22 chr1 271722527 271723122 -10470542 - L1M4 LINE L1 -1815 4331 3693 1777 250 91 7 chr1 271723262 271723866 -10469798 - L1ME1 LINE L1 -2793 3422 2768 986 220 52 43 chr1 271723867 271724172 -10469492 - LTR40c LTR ERVL -157 308 1 2265 209 54 47 chr1 271724172 271724555 -10469109 - L1ME1 LINE L1 -5185 1211 819 2206 112 3 0 chr1 271724555 271724850 -10468814 - AluSx SINE Alu -16 296 1 2265 209 54 47 chr1 271724850 271725132 -10468532 - L1ME1 LINE L1 -5577 819 541 3442 259 73 30 chr1 271725223 271725337 -10468327 - L1MEc LINE L1 -5089 1307 1199 2343 79 10 0 chr1 271725337 271725642 -10468022 - AluSq SINE Alu -5 308 1 3442 259 73 30 chr1 271725642 271726729 -10466935 - L1MEc LINE L1 -5197 1199 54 2309 106 0 28 chr1 271726809 271727131 -10466533 - AluSq SINE Alu 0 313 1 323 275 110 9 chr1 271727260 271727369 -10466295 - L2 LINE L2 -5 3308 3189 2145 93 11 0 chr1 271727394 271727697 -10465967 + AluSp SINE Alu 1 306 0 189 107 0 0 chr1 271728323 271728351 -10465313 + (TG)n Simple_repeat Simple_repeat 1 28 0 550 101 30 35 chr1 271728351 271728520 -10465144 + GA-rich Low_complexity Low_complexity 2 169 0 301 115 34 61 chr1 271728523 271728671 -10464993 + HERV17 LTR ERV1 704 847 -7779 182 120 0 76 chr1 271728676 271728768 -10464896 + (GA)n Simple_repeat Simple_repeat 2 86 0 312 238 74 165 chr1 271728849 271729375 -10464289 - L1M2 LINE L1 -5872 977 542 28 61 0 0 chr1 271729525 271729574 -10464090 + GC_rich Low_complexity Low_complexity 1 49 0 326 107 18 0 chr1 271732019 271732075 -10461589 + (TA)n Simple_repeat Simple_repeat 1 57 0 1209 172 116 48 chr1 271732087 271732355 -10461309 - AluJo SINE Alu -26 286 1 250 287 88 52 chr1 271733124 271733346 -10460318 + MIR SINE MIR 33 262 0 1131 158 22 0 chr1 271733447 271733630 -10460034 - L1MB3 LINE L1 -7 6176 5990 2107 108 3 26 chr1 271733638 271733944 -10459720 - AluSg SINE Alu -11 299 1 2014 148 0 7 chr1 271734062 271734360 -10459304 + AluJo SINE Alu 1 296 -16 210 71 0 0 chr1 271735872 271735900 -10457764 + (CA)n Simple_repeat Simple_repeat 1 28 0 289 359 83 24 chr1 271736180 271736603 -10457061 + L2 LINE L2 2374 2821 -493 2393 98 0 9 chr1 271736891 271737207 -10456457 - AluSp SINE Alu 0 313 1 1585 174 4 11 chr1 271737467 271737742 -10455922 + AluJo SINE Alu 1 273 -39 1904 136 7 36 chr1 271737769 271738077 -10455587 + AluSx SINE Alu 1 299 -13 1897 126 7 42 chr1 271738708 271739017 -10454647 + AluSx SINE Alu 1 298 -14 234 240 40 0 chr1 271739249 271739324 -10454340 + MER116 DNA Mariner 3 80 0 2539 54 7 0 chr1 271739350 271739644 -10454020 - AluSc SINE Alu -13 296 1 1325 148 5 0 chr1 271739820 271740016 -10453648 + AluJb SINE Alu 94 290 -22 2012 120 13 54 chr1 271740439 271740756 -10452908 - AluSx SINE Alu -8 304 1 259 275 210 24 chr1 271741488 271741655 -10452009 - MIR SINE MIR -6 256 59 1220 89 0 24 chr1 271742847 271743052 -10450612 - AluSg/x SINE Alu 0 317 117 301 133 100 0 chr1 271743647 271743707 -10449957 + MIR SINE MIR 79 144 -64 609 214 15 0 chr1 271743741 271743872 -10449792 - MER94 DNA DNA 0 134 2 22 70 0 0 chr1 271745098 271745141 -10448523 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr1 271746117 271746140 -10447524 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr1 271746345 271746370 -10447294 + AT_rich Low_complexity Low_complexity 1 25 0 3983 174 42 73 chr1 271746943 271747874 -10445790 - MER21A LTR ERV1 -17 914 13 26 0 0 0 chr1 271747885 271747911 -10445753 + AT_rich Low_complexity Low_complexity 1 26 0 1252 185 193 25 chr1 271747998 271748360 -10445304 - LTR37A LTR ERV1 0 426 4 243 208 21 0 chr1 271748994 271749042 -10444622 - L2 LINE L2 -6 3307 3259 378 74 0 19 chr1 271749358 271749412 -10444252 + MADE1 DNA Mariner 28 80 0 2472 84 0 3 chr1 271750339 271750690 -10442974 - AluSg SINE Alu 0 350 1 186 394 21 0 chr1 271750699 271750793 -10442871 - MIR SINE MIR -120 142 47 325 244 0 0 chr1 271751903 271751993 -10441671 - L1MC4 LINE L1 -1339 6703 6614 339 164 0 0 chr1 271752000 271752061 -10441603 + (TA)n Simple_repeat Simple_repeat 2 62 0 2228 106 8 95 chr1 271753268 271753637 -10440027 + MER1B DNA MER1_type 1 337 0 2171 123 7 3 chr1 271754020 271754321 -10439343 - AluSx SINE Alu -10 302 1 823 109 22 51 chr1 271755220 271755358 -10438306 + FRAM SINE Alu 36 169 -7 630 246 62 43 chr1 271755735 271755887 -10437777 + L1MC4a LINE L1 5717 5714 -448 2202 124 3 0 chr1 271755887 271756193 -10437471 - AluSp SINE Alu -1 312 6 630 246 62 43 chr1 271756193 271756319 -10437345 + L1MC4a LINE L1 5713 5835 -327 1255 68 0 6 chr1 271757638 271757801 -10435863 - L1PA4 LINE L1 0 6155 5994 326 107 18 0 chr1 271760474 271760530 -10433134 + (TA)n Simple_repeat Simple_repeat 2 58 0 1209 172 116 48 chr1 271760542 271760810 -10432854 - AluJo SINE Alu -26 286 1 250 287 88 52 chr1 271761579 271761801 -10431863 + MIR SINE MIR 33 262 0 1131 158 22 0 chr1 271761902 271762085 -10431579 - L1MB3 LINE L1 -7 6176 5990 2018 121 7 23 chr1 271762093 271762399 -10431265 - AluSx SINE Alu -11 301 1 259 275 210 24 chr1 271763131 271763298 -10430366 - MIR SINE MIR -6 256 59 1220 89 0 24 chr1 271764490 271764695 -10428969 - AluSg/x SINE Alu 0 319 119 301 133 100 0 chr1 271765290 271765350 -10428314 + MIR SINE MIR 79 144 -64 609 214 15 0 chr1 271765384 271765515 -10428149 - MER94 DNA DNA 0 134 2 22 70 0 0 chr1 271766741 271766784 -10426880 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr1 271767760 271767783 -10425881 + (T)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr1 271767988 271768013 -10425651 + AT_rich Low_complexity Low_complexity 1 25 0 3983 174 42 73 chr1 271768586 271769517 -10424147 - MER21A LTR ERV1 -17 914 13 26 0 0 0 chr1 271769528 271769554 -10424110 + AT_rich Low_complexity Low_complexity 1 26 0 1252 185 193 25 chr1 271769641 271770003 -10423661 - LTR37A LTR ERV1 0 426 4 243 208 21 0 chr1 271770637 271770685 -10422979 - L2 LINE L2 -6 3307 3259 378 74 0 19 chr1 271771001 271771055 -10422609 + MADE1 DNA Mariner 28 80 0 2472 84 0 3 chr1 271771982 271772333 -10421331 - AluSg SINE Alu 0 350 1 186 394 21 0 chr1 271772342 271772436 -10421228 - MIR SINE MIR -120 142 47 227 91 0 0 chr1 271773536 271773580 -10420084 + LTR66 LTR ERVL 395 438 -172 192 77 0 0 chr1 271773593 271773619 -10420045 + (TA)n Simple_repeat Simple_repeat 2 27 0 249 259 47 0 chr1 271773620 271773705 -10419959 - L1MC4 LINE L1 -1340 6702 6614 2015 127 8 95 chr1 271774918 271775287 -10418377 + MER1B DNA MER1_type 1 337 0 2171 123 7 3 chr1 271775670 271775971 -10417693 - AluSx SINE Alu -10 302 1 823 109 22 51 chr1 271776870 271777008 -10416656 + FRAM SINE Alu 36 169 -7 27 0 0 0 chr1 271777181 271777208 -10416456 + AT_rich Low_complexity Low_complexity 1 27 0 642 240 101 35 chr1 271777386 271777538 -10416126 + L1MC4a LINE L1 5717 5720 -442 2177 128 3 0 chr1 271777538 271777843 -10415821 - AluSp SINE Alu -2 311 6 642 240 101 35 chr1 271777843 271777968 -10415696 + L1MC4a LINE L1 5720 5835 -327 1362 43 0 0 chr1 271778741 271778903 -10414761 - L1PA4 LINE L1 0 6155 5994 24 53 0 0 chr1 271778948 271778986 -10414678 + AT_rich Low_complexity Low_complexity 1 38 0 958 209 59 0 chr1 271779040 271779227 -10414437 + MER3 DNA MER1_type 2 199 -10 2131 134 23 0 chr1 271779258 271779563 -10414101 + AluSq SINE Alu 1 312 -1 2265 125 0 0 chr1 271780420 271780723 -10412941 - AluSx SINE Alu -9 303 1 1918 140 24 10 chr1 271780749 271781042 -10412622 + AluJo SINE Alu 1 297 -15 188 258 30 45 chr1 271782697 271782763 -10410901 - L2 LINE L2 -18 3254 3190 2045 115 10 33 chr1 271783097 271783401 -10410263 + AluSx SINE Alu 1 297 -15 253 265 0 29 chr1 271784156 271784224 -10409440 + CT-rich Low_complexity Low_complexity 2 67 0 2452 64 3 0 chr1 271784609 271784904 -10408760 - AluY SINE Alu 0 311 16 25 31 0 0 chr1 271785627 271785659 -10408005 + AT_rich Low_complexity Low_complexity 1 32 0 2533 87 0 0 chr1 271785948 271786258 -10407406 + AluSg SINE Alu 1 310 0 2021 106 33 4 chr1 271787045 271787352 -10406312 - AluSx SINE Alu 0 315 1 1108 211 55 68 chr1 271787545 271787595 -10406069 - LTR16B LTR ERVL 0 464 415 1483 207 8 75 chr1 271787595 271787996 -10405668 - MLT1A2 LTR MaLR 0 374 1 1108 211 55 68 chr1 271787996 271788415 -10405249 - LTR16B LTR ERVL -49 415 1 210 71 0 0 chr1 271788427 271788455 -10405209 + (T)n Simple_repeat Simple_repeat 1 28 0 2233 107 3 7 chr1 271788940 271789239 -10404425 + AluSx SINE Alu 1 298 -14 265 282 0 0 chr1 271790320 271790391 -10403273 - L2 LINE L2 -9 3263 3193 180 111 0 0 chr1 271790767 271790794 -10402870 + (A)n Simple_repeat Simple_repeat 1 27 0 2532 63 0 0 chr1 271791739 271792038 -10401626 - AluY SINE Alu -12 299 1 856 185 0 13 chr1 271792342 271792499 -10401165 + FRAM SINE Alu 1 155 -21 1961 158 0 7 chr1 271793069 271793367 -10400297 + AluJo SINE Alu 1 296 -16 210 71 0 0 chr1 271794879 271794907 -10398757 + (CA)n Simple_repeat Simple_repeat 1 28 0 187 369 80 21 chr1 271795186 271795609 -10398055 + L2 LINE L2 2374 2821 -493 2410 98 0 9 chr1 271795897 271796213 -10397451 - AluSp SINE Alu 0 313 1 1600 174 4 11 chr1 271796473 271796748 -10396916 + AluJo SINE Alu 1 273 -39 1929 136 7 36 chr1 271796775 271797083 -10396581 + AluSx SINE Alu 1 299 -13 2302 102 0 0 chr1 271797715 271798020 -10395644 + AluSx SINE Alu 1 305 -7 437 193 79 61 chr1 271798710 271798824 -10394840 - MIR SINE MIR -72 190 75 195 240 107 13 chr1 271799484 271799559 -10394105 + MIR3 SINE MIR 105 186 -22 23 0 0 0 chr1 271800264 271800287 -10393377 + AT_rich Low_complexity Low_complexity 1 23 0 1283 235 81 66 chr1 271800843 271801111 -10392553 - MLT1C LTR MaLR -5 462 183 2362 109 0 0 chr1 271801111 271801422 -10392242 - AluSx SINE Alu -1 311 1 1283 235 81 66 chr1 271801422 271801608 -10392056 - MLT1C LTR MaLR -284 183 1 180 0 0 0 chr1 271805978 271805998 -10387666 + (TA)n Simple_repeat Simple_repeat 2 21 0 240 35 0 0 chr1 271806676 271806705 -10386959 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1986 122 4 0 chr1 271806709 271806988 -10386676 - AluSx SINE Alu -32 280 1 1678 292 108 46 chr1 271808552 271808799 -10384865 + L2 LINE L2 1571 1801 -1512 2512 71 0 0 chr1 271808799 271809093 -10384571 - AluSx SINE Alu -18 294 1 1678 292 108 46 chr1 271809093 271809207 -10384457 + L2 LINE L2 1801 1906 -1407 2174 94 0 0 chr1 271809207 271809483 -10384181 - AluSg SINE Alu -7 303 28 1678 292 108 46 chr1 271809483 271809719 -10383945 + L2 LINE L2 1906 2126 -1187 1801 168 20 3 chr1 271809719 271810017 -10383647 - AluJo SINE Alu -7 305 3 1678 292 108 46 chr1 271810017 271811048 -10382616 + L2 LINE L2 2126 3303 -10 645 178 47 16 chr1 271811102 271811231 -10382433 + FLAM_A SINE Alu 1 133 0 669 292 46 0 chr1 271812418 271812634 -10381030 + MIR SINE MIR 14 239 -23 2580 35 0 0 chr1 271813831 271814119 -10379545 + AluY SINE Alu 1 288 -23 195 42 0 0 chr1 271814122 271814146 -10379518 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29 28 0 0 chr1 271814502 271814538 -10379126 + AT_rich Low_complexity Low_complexity 1 36 0 2539 70 0 10 chr1 271814560 271814874 -10378790 + AluY SINE Alu 1 311 0 1746 182 7 3 chr1 271815104 271815400 -10378264 + AluJo SINE Alu 1 297 -15 818 194 69 65 chr1 271815515 271815731 -10377933 - L1PB4 LINE L1 0 6156 5940 1875 144 0 14 chr1 271817686 271818014 -10375650 + AluJb SINE Alu 1 324 0 2143 133 3 7 chr1 271818978 271819287 -10374377 + AluJo SINE Alu 1 308 -4 24 0 0 0 chr1 271819379 271819403 -10374261 + AT_rich Low_complexity Low_complexity 1 24 0 2056 133 0 19 chr1 271820705 271821021 -10372643 - AluSx SINE Alu 0 312 3 1520 232 67 28 chr1 271821311 271821772 -10371892 - Charlie4a DNA MER1_type 0 508 30 259 289 0 36 chr1 271821955 271822038 -10371626 + C-rich Low_complexity Low_complexity 1 80 0 1809 137 6 67 chr1 271825361 271825551 -10368113 - AluSx SINE Alu -4 308 145 2426 87 7 0 chr1 271825551 271825860 -10367804 - AluSp SINE Alu 0 313 3 1809 137 6 67 chr1 271825860 271825997 -10367667 - AluSx SINE Alu -167 145 1 461 132 40 13 chr1 271825997 271826073 -10367591 - MLT1C LTR MaLR -386 81 4 615 106 0 48 chr1 271826375 271826479 -10367185 + AluSg/x SINE Alu 196 294 -16 205 216 0 0 chr1 271826673 271826710 -10366954 + T-rich Low_complexity Low_complexity 1 37 0 1119 73 20 0 chr1 271826716 271826866 -10366798 - L1PB1 LINE L1 -4 6147 5995 278 294 17 67 chr1 271827443 271827562 -10366102 + L2 LINE L2 3149 3261 -11 202 207 86 112 chr1 271827626 271827742 -10365922 - MIR SINE MIR -70 192 80 21 36 0 0 chr1 271829477 271829505 -10364159 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr1 271829524 271829554 -10364110 + AT_rich Low_complexity Low_complexity 1 30 0 230 242 22 22 chr1 271830236 271830327 -10363337 + (TGAA)n Simple_repeat Simple_repeat 3 93 0 2162 100 4 0 chr1 271830427 271830751 -10362913 + AluSx SINE Alu 1 325 0 1728 174 20 13 chr1 271831869 271832173 -10361491 - AluJb SINE Alu -6 306 1 306 271 93 28 chr1 271833642 271833749 -10359915 - MIR3 SINE MIR -84 124 11 450 311 78 21 chr1 271834048 271834334 -10359330 - L2 LINE L2 -208 3105 2799 48 53 0 0 chr1 271834882 271834958 -10358706 + AT_rich Low_complexity Low_complexity 1 76 0 604 158 0 61 chr1 271835393 271835507 -10358157 + AluSg/x SINE Alu 193 299 -10 3130 209 38 14 chr1 271835718 271836345 -10357319 - MER82 DNA MER2_type -11 642 1 935 253 144 10 chr1 271836359 271836758 -10356906 - L1ME3A LINE L1 -214 5956 5482 192 152 0 0 chr1 271836903 271836936 -10356728 + (TG)n Simple_repeat Simple_repeat 2 34 0 1130 202 56 5 chr1 271837336 271837549 -10356115 + MER58A DNA MER1_type 1 224 0 460 253 56 82 chr1 271838002 271838307 -10355357 - L1ME4a LINE L1 -18 6103 5807 259 289 0 36 chr1 271841116 271841199 -10352465 + C-rich Low_complexity Low_complexity 1 80 0 2166 108 0 23 chr1 271845613 271845920 -10347744 - AluSc SINE Alu -9 300 1 2090 129 0 3 chr1 271845920 271846252 -10347412 - AluSq SINE Alu 0 313 1 2269 102 7 0 chr1 271847295 271847589 -10346075 + AluSq SINE Alu 1 296 -17 473 152 25 0 chr1 271847678 271847757 -10345907 - L1MB8 LINE L1 -1 6177 6097 264 59 0 0 chr1 271848761 271848795 -10344869 + (TG)n Simple_repeat Simple_repeat 1 34 0 2144 110 10 10 chr1 271852168 271852476 -10341188 + AluSq SINE Alu 1 308 -5 206 361 9 37 chr1 271852522 271852630 -10341034 - MER5A DNA MER1_type -26 163 59 2353 99 0 3 chr1 271852716 271853019 -10340645 + AluSc SINE Alu 1 302 -7 2058 178 89 0 chr1 271853801 271854171 -10339493 - MER57A LTR ERV1 0 403 1 1709 207 194 41 chr1 271854279 271854593 -10339071 + Charlie2a DNA MER1_type 461 726 -2136 1765 163 3 23 chr1 271854593 271854894 -10338770 + AluJb SINE Alu 1 295 -17 1709 207 194 41 chr1 271854894 271855285 -10338379 + Charlie2a DNA MER1_type 726 1274 -1588 1219 421 10 10 chr1 271855286 271855583 -10338081 - AluSq SINE Alu -6 297 1 2055 134 6 6 chr1 271855592 271855905 -10337759 - AluSq SINE Alu 0 313 1 226 261 17 61 chr1 271855975 271856090 -10337574 + L1MC/D LINE L1 5765 5874 -1934 2173 104 0 7 chr1 271856207 271856495 -10337169 + AluSx SINE Alu 1 286 -26 216 302 56 50 chr1 271856870 271857049 -10336615 + MIR SINE MIR 11 190 -72 2395 92 0 10 chr1 271857108 271857414 -10336250 + AluSc SINE Alu 1 303 -6 1260 157 9 14 chr1 271857421 271857638 -10336026 + AluJb SINE Alu 82 297 -15 459 221 32 11 chr1 271858292 271858387 -10335277 - MIR SINE MIR -146 116 20 277 324 27 0 chr1 271859083 271859157 -10334507 - L2 LINE L2 -1 3271 3196 24 0 0 29 chr1 271859963 271859978 -10333686 + AT_rich Low_complexity Low_complexity 1 15 -19 2268 101 14 0 chr1 271859978 271860274 -10333390 + AluSx SINE Alu 1 300 -12 24 0 0 29 chr1 271860274 271860293 -10333371 + AT_rich Low_complexity Low_complexity 15 34 0 744 134 0 50 chr1 271860392 271860511 -10333153 - FRAM SINE Alu -16 160 48 618 175 8 25 chr1 271861018 271861138 -10332526 + AluY SINE Alu 153 270 -41 192 158 79 0 chr1 271861661 271861699 -10331965 + MIR SINE MIR 124 164 -98 192 401 56 0 chr1 271862263 271862405 -10331259 - L2 LINE L2 -4 3309 3160 733 189 95 45 chr1 271862491 271862712 -10330952 - MLT1A1 LTR MaLR 0 365 134 595 186 0 24 chr1 271862712 271862890 -10330774 + MLT1A1 LTR MaLR 1 235 -130 357 231 52 22 chr1 271863036 271863170 -10330494 - L1ME4a LINE L1 -278 5843 5706 263 333 61 5 chr1 271863389 271863587 -10330077 - L1MC4a LINE L1 -1889 5919 5711 355 291 48 63 chr1 271863934 271863997 -10329667 - MIR SINE MIR -6 256 194 1740 147 0 56 chr1 271863997 271864303 -10329361 - AluJo SINE Alu -23 289 1 355 291 48 63 chr1 271864303 271864445 -10329219 - MIR SINE MIR -68 194 54 4151 137 33 28 chr1 271865073 271865688 -10327976 - L1MB3 LINE L1 -1 6182 5561 2059 127 0 0 chr1 271865688 271865979 -10327685 - AluSx SINE Alu -21 291 1 4151 137 33 28 chr1 271865979 271866085 -10327579 - L1MB3 LINE L1 -622 5561 5457 926 236 33 14 chr1 271866272 271866484 -10327180 - MER58A DNA MER1_type 0 224 9 797 217 131 19 chr1 271868650 271868917 -10324747 - MER46C DNA MER2_type -41 297 1 449 257 123 28 chr1 271869108 271869287 -10324377 + MIR SINE MIR 66 261 -1 2338 113 57 28 chr1 271869487 271869841 -10323823 - THE1B LTR MaLR 0 364 1 1055 234 0 14 chr1 271870205 271870414 -10323250 + MER6B DNA MER2_type 1 206 -4 1387 153 39 9 chr1 271870450 271870679 -10322985 - AluSx SINE Alu -76 236 1 21 82 0 0 chr1 271871538 271871587 -10322077 + AT_rich Low_complexity Low_complexity 1 49 0 294 253 127 0 chr1 271871842 271871921 -10321743 - L1MC4a LINE L1 -2107 5701 5613 1370 215 92 52 chr1 271872044 271872509 -10321155 + Charlie2a DNA MER1_type 1340 1823 -1039 263 245 101 51 chr1 271872507 271872691 -10320973 + MLT1J1 LTR MaLR 303 446 0 * 2088 119 13 7 chr1 271873204 271873514 -10320150 - AluSx SINE Alu 0 312 1 860 238 11 6 chr1 271874547 271874728 -10318936 + AluJo SINE Alu 121 302 -10 299 187 0 53 chr1 271874728 271874803 -10318861 + MER113 DNA MER1_type? 147 217 -304 221 197 131 16 chr1 271875445 271875506 -10318158 - MIR3 SINE MIR -41 167 100 * 306 295 132 8 chr1 271875504 271875633 -10318031 - MIR SINE MIR -59 203 59 1048 164 0 11 chr1 271875667 271875844 -10317820 - AluJb SINE Alu -4 308 134 2176 101 0 17 chr1 271876462 271876760 -10316904 - AluSx SINE Alu -19 293 1 265 237 13 53 chr1 271876779 271876878 -10316786 + MER39 LTR ERV1 1 96 -446 * 1569 169 100 97 chr1 271876876 271877384 -10316280 + LTR48B LTR ERV1 134 643 -1 384 317 58 8 chr1 271877384 271877504 -10316160 + L2 LINE L2 3145 3270 -2 2142 113 3 10 chr1 271878213 271878523 -10315141 - AluSx SINE Alu -4 308 1 318 278 43 17 chr1 271879400 271879515 -10314149 + MLT1J LTR MaLR 388 505 -6 456 188 21 10 chr1 271879765 271879861 -10313803 + HsTC2 DNA Tc2 30 126 -1772 2150 90 0 7 chr1 271879891 271880192 -10313472 - AluSc SINE Alu 0 303 5 2736 16 0 0 chr1 271880454 271880757 -10312907 - AluYa5 SINE Alu -8 303 1 347 314 29 95 chr1 271880854 271881160 -10312504 + HAL1b LINE L1 168 453 -895 953 222 63 57 chr1 271881170 271881253 -10312411 + L1M4c LINE L1 30 111 -6273 2534 149 50 24 chr1 271881253 271881676 -10311988 + Tigger2a DNA MER2_type 1 434 0 953 222 63 57 chr1 271881676 271881926 -10311738 + L1M4c LINE L1 111 365 -6019 1766 243 37 65 chr1 271882018 271882715 -10310949 + L1M4c LINE L1 564 1241 -5039 2148 138 41 22 chr1 271882715 271883077 -10310587 - THE1C LTR MaLR -6 369 1 3177 227 92 61 chr1 271883077 271883499 -10310165 + L1M4c LINE L1 1232 1640 -4742 2135 131 7 0 chr1 271883499 271883804 -10309860 + AluSx SINE Alu 1 307 -5 3177 227 92 61 chr1 271883804 271884915 -10308749 + L1M4c LINE L1 1640 2842 -3540 1829 137 48 19 chr1 271884931 271885245 -10308419 + L1MB4 LINE L1 5809 6131 -49 761 152 0 0 chr1 271885246 271885358 -10308306 + FLAM_A SINE Alu 24 135 -7 240 89 18 18 chr1 271885359 271885415 -10308249 + L1MB4 LINE L1 6124 6179 -1 275 136 242 0 chr1 271885432 271885498 -10308166 + L1MB7 LINE L1 6103 6184 0 625 180 123 33 chr1 271885581 271885703 -10307961 + AluJo SINE Alu 2 134 -178 325 308 17 0 chr1 271885705 271885822 -10307842 + HAL1b LINE L1 498 616 -732 1562 191 7 7 chr1 271886209 271886502 -10307162 - AluJb SINE Alu -7 305 13 2142 122 0 0 chr1 271886801 271887096 -10306568 + AluSq SINE Alu 17 311 -2 188 297 55 33 chr1 271887733 271887824 -10305840 - L2 LINE L2 0 3313 3221 1057 191 72 106 chr1 271887832 271888048 -10305616 - MLT1A2 LTR MaLR 0 374 175 2214 125 0 0 chr1 271888048 271888344 -10305320 - AluSx SINE Alu -16 296 1 1057 191 72 106 chr1 271888344 271888514 -10305150 - MLT1A2 LTR MaLR -199 175 1 1843 184 0 0 chr1 271888529 271888839 -10304825 - AluSx SINE Alu -2 310 1 7148 189 99 55 chr1 271888927 271890609 -10303055 + MER52A LTR ERV1 1 1755 0 705 289 0 6 chr1 271890899 271891065 -10302599 + MIR SINE MIR 7 171 -91 2058 142 0 7 chr1 271891101 271891404 -10302260 - AluSx SINE Alu -11 301 1 190 185 93 37 chr1 271891489 271891543 -10302121 + L2 LINE L2 3257 3313 0 1878 165 3 7 chr1 271891917 271892214 -10301450 + AluJo SINE Alu 1 296 -16 203 95 48 0 chr1 271892477 271892519 -10301145 + (CAAAC)n Simple_repeat Simple_repeat 1 44 0 2293 119 0 0 chr1 271892802 271893112 -10300552 - AluSg SINE Alu 0 310 1 267 250 66 81 chr1 271893121 271893172 -10300492 + MIR SINE MIR 105 155 -107 3540 107 48 94 chr1 271893172 271893760 -10299904 - MER4A LTR ERV1 0 600 41 2054 118 3 10 chr1 271893760 271894048 -10299616 - AluSx SINE Alu -8 304 19 3540 107 48 94 chr1 271894048 271894088 -10299576 - MER4A LTR ERV1 -559 41 1 267 250 66 81 chr1 271894088 271894172 -10299492 + MIR SINE MIR 155 238 -24 2654 106 29 114 chr1 271894568 271894631 -10299033 + MER4E LTR ERV1 23 90 -689 2370 68 3 7 chr1 271894631 271894925 -10298739 + AluSx SINE Alu 1 293 -19 2654 106 29 114 chr1 271894925 271895491 -10298173 + MER4E LTR ERV1 90 779 0 1216 213 128 44 chr1 271896003 271896370 -10297294 - MLT1C LTR MaLR 0 467 70 903 153 18 6 chr1 271896381 271896544 -10297120 - AluSg/x SINE Alu -4 308 144 321 207 37 12 chr1 271897533 271897615 -10296049 - HsTC2 DNA Tc2 -1812 86 3 787 191 0 8 chr1 271897791 271897922 -10295742 - FRAM SINE Alu -11 165 36 22 0 0 0 chr1 271897927 271897949 -10295715 + AT_rich Low_complexity Low_complexity 1 22 0 854 217 6 12 chr1 271899559 271899720 -10293944 + FAM SINE Alu 5 164 -11 696 215 84 21 chr1 271900087 271900278 -10293386 - MIR SINE MIR 0 262 60 876 170 29 23 chr1 271900768 271900939 -10292725 + L1MC2 LINE L1 6055 6226 -118 25 0 0 0 chr1 271901162 271901187 -10292477 + AT_rich Low_complexity Low_complexity 1 25 0 187 280 20 0 chr1 271901571 271901621 -10292043 - L2 LINE L2 -215 3057 3007 2646 184 41 8 chr1 271901669 271902184 -10291480 - L1MC2 LINE L1 -112 6232 5701 3016 190 42 13 chr1 271903227 271903670 -10289994 - L1MC2 LINE L1 -630 5714 5285 1547 248 95 7 chr1 271903670 271904090 -10289574 - MSTB2 LTR MaLR 0 457 1 3016 190 42 13 chr1 271904090 271904744 -10288920 - L1MC2 LINE L1 -1059 5285 4593 25 0 0 0 chr1 271905027 271905052 -10288612 + AT_rich Low_complexity Low_complexity 1 25 0 1348 269 82 12 chr1 271905431 271905858 -10287806 + L2 LINE L2 351 807 -2507 494 138 60 35 chr1 271905864 271905980 -10287684 + Charlie5 DNA MER1_type 5 123 -2489 2070 154 3 0 chr1 271906086 271906391 -10287273 - AluJo SINE Alu -6 306 1 2135 153 39 31 chr1 271906764 271907151 -10286513 + MLT1B LTR MaLR 1 390 0 465 283 50 0 chr1 271907172 271907331 -10286333 - L1MC5 LINE L1 -71 7890 7724 24 24 0 24 chr1 271907766 271907785 -10285879 + AT_rich Low_complexity Low_complexity 1 19 -22 2341 77 0 0 chr1 271907785 271908072 -10285592 - AluY SINE Alu -24 287 1 24 24 0 24 chr1 271908072 271908094 -10285570 + AT_rich Low_complexity Low_complexity 19 41 0 246 233 0 0 chr1 271908199 271908259 -10285405 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr1 271910207 271910228 -10283436 + AT_rich Low_complexity Low_complexity 1 21 0 240 247 233 40 chr1 271910812 271910962 -10282702 - MIR SINE MIR -69 193 15 188 336 86 17 chr1 271911144 271911260 -10282404 - MIR3 SINE MIR -74 134 11 906 222 107 8 chr1 271913133 271913367 -10280297 - MIR SINE MIR 0 262 6 252 289 164 19 chr1 271913464 271913568 -10280096 + MIR3 SINE MIR 9 127 -81 2145 133 0 0 chr1 271913999 271914293 -10279371 - AluSx SINE Alu -18 294 1 244 304 78 26 chr1 271914667 271914782 -10278882 - MER103 DNA DNA -21 145 25 183 282 169 48 chr1 271914894 271915018 -10278646 - L2 LINE L2 -265 3048 2910 1210 186 120 25 chr1 271916073 271916347 -10277317 - AluJo SINE Alu -11 301 2 231 264 8 72 chr1 271917411 271917536 -10276128 + L2 LINE L2 2997 3113 -159 752 202 0 0 chr1 271917713 271917842 -10275822 + FLAM_A SINE Alu 1 129 -4 231 275 46 28 chr1 271918729 271918838 -10274826 - L1MC4 LINE L1 -1317 6725 6615 1965 188 6 12 chr1 271918862 271919207 -10274457 - MER7A DNA MER2_type -5 341 1 361 294 9 0 chr1 271919241 271919350 -10274314 + L1M4 LINE L1 4879 4988 -1158 324 262 121 70 chr1 271919386 271919982 -10273682 + L1P4 LINE L1 5256 5836 -298 445 327 64 32 chr1 271920313 271920533 -10273131 - MIR SINE MIR -2 260 34 357 271 100 14 chr1 271920576 271920716 -10272948 - L2 LINE L2 -227 3086 2935 382 278 153 43 chr1 271920728 271921055 -10272609 - L1ME4a LINE L1 -203 5918 5556 2418 249 152 46 chr1 271921170 271921989 -10271675 - HAL1 LINE L1 -113 2394 1392 2509 37 7 3 chr1 271921989 271922286 -10271378 - AluY SINE Alu -13 298 1 2418 249 152 46 chr1 271922286 271922733 -10270931 - HAL1 LINE L1 -1115 1392 994 4215 255 105 35 chr1 271922733 271922899 -10270765 - L2 LINE L2 -15 3298 3145 2283 120 0 0 chr1 271922899 271923200 -10270464 + AluSx SINE Alu 1 301 -11 4215 255 105 35 chr1 271923200 271924549 -10269115 - L2 LINE L2 -168 3145 1648 414 0 0 0 chr1 271924549 271924595 -10269069 + (TG)n Simple_repeat Simple_repeat 2 47 0 4215 255 105 35 chr1 271924595 271924931 -10268733 - L2 LINE L2 -1665 1648 1337 389 279 29 29 chr1 271924986 271925122 -10268542 - MER5B DNA MER1_type -40 138 3 326 295 29 14 chr1 271925526 271925665 -10267999 + MARNA DNA Mariner 307 447 -139 184 301 133 36 chr1 271926510 271926593 -10267071 + L2 LINE L2 3199 3289 -24 477 234 69 86 chr1 271926830 271927005 -10266659 + MER5B DNA MER1_type 5 176 -2 2218 128 0 0 chr1 271927463 271927775 -10265889 + AluSx SINE Alu 1 312 0 379 354 79 11 chr1 271928985 271929352 -10264312 - L1ME LINE L1 -347 5774 5383 258 302 38 19 chr1 271979376 271979482 -10214182 - L1ME LINE L1 -458 5663 5556 2036 245 129 46 chr1 271979597 271980416 -10213248 - HAL1 LINE L1 -113 2394 1403 2509 37 7 3 chr1 271980416 271980713 -10212951 - AluY SINE Alu -13 298 1 2036 245 129 46 chr1 271980713 271981160 -10212504 - HAL1 LINE L1 -1104 1403 994 4241 253 105 35 chr1 271981160 271981326 -10212338 - L2 LINE L2 -15 3298 3145 2283 120 0 0 chr1 271981326 271981627 -10212037 + AluSx SINE Alu 1 301 -11 4241 253 105 35 chr1 271981627 271982976 -10210688 - L2 LINE L2 -168 3145 1648 450 0 0 0 chr1 271982976 271983026 -10210638 + (TG)n Simple_repeat Simple_repeat 2 51 0 4241 253 105 35 chr1 271983026 271983362 -10210302 - L2 LINE L2 -1665 1648 1337 389 279 29 29 chr1 271983417 271983553 -10210111 - MER5B DNA MER1_type -40 138 3 433 354 70 11 chr1 271983817 271984187 -10209477 + L1ME LINE L1 5383 5774 -347 2218 128 0 0 chr1 271985397 271985709 -10207955 - AluSx SINE Alu 0 312 1 477 234 69 86 chr1 271986167 271986342 -10207322 - MER5B DNA MER1_type -2 176 5 184 301 133 36 chr1 271986579 271986662 -10207002 - L2 LINE L2 -24 3289 3199 400 300 25 12 chr1 271987507 271987667 -10205997 - MARNA DNA Mariner -139 447 286 225 278 0 0 chr1 271987692 271987746 -10205918 + MARNA DNA Mariner 399 452 -134 614 310 110 27 chr1 271987756 271988207 -10205457 - L2 LINE L2 -22 3291 2799 48 53 0 0 chr1 271988755 271988831 -10204833 + AT_rich Low_complexity Low_complexity 1 76 0 604 158 0 61 chr1 271989266 271989380 -10204284 + AluSg/x SINE Alu 196 302 -10 3139 207 38 14 chr1 271989591 271990218 -10203446 - MER82 DNA MER2_type -11 642 1 935 253 144 10 chr1 271990232 271990631 -10203033 - L1ME3A LINE L1 -214 5956 5482 192 152 0 0 chr1 271990776 271990809 -10202855 + (TG)n Simple_repeat Simple_repeat 2 34 0 1130 202 56 5 chr1 271991209 271991422 -10202242 + MER58A DNA MER1_type 1 224 0 460 253 56 82 chr1 271991875 271992180 -10201484 - L1ME4a LINE L1 -18 6103 5807 328 130 11 43 chr1 271994963 271995055 -10198609 + CT-rich Low_complexity Low_complexity 3 91 0 6176 50 10 3 chr1 271995062 271995790 -10197874 - L1PA7 LINE L1 -8 6146 5414 533 346 21 77 chr1 271996104 271996431 -10197233 - L2 LINE L2 0 3272 2964 2691 95 34 14 chr1 271996635 271996992 -10196672 - THE1B LTR MaLR 0 364 1 201 361 202 14 chr1 271996992 271997338 -10196326 - L2 LINE L2 -504 2810 2394 1176 211 252 22 chr1 271997574 271997896 -10195768 - MSTD LTR MaLR 0 396 1 780 236 50 0 chr1 271998330 271998512 -10195152 + MER20 DNA MER1_type 29 219 0 186 240 40 0 chr1 271998570 271998620 -10195044 + MIR SINE MIR 87 138 -124 201 39 0 0 chr1 271998637 271998663 -10195001 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 249 200 31 0 chr1 271999019 271999084 -10194580 - L1MA8 LINE L1 -4 6287 6221 291 256 295 0 chr1 271999118 271999274 -10194390 - MIR SINE MIR -48 214 13 312 120 0 0 chr1 271999315 271999365 -10194299 + (T)n Simple_repeat Simple_repeat 1 50 0 250 217 0 0 chr1 272000868 272000914 -10192750 - L2 LINE L2 -18 3254 3209 21 0 0 0 chr1 272002329 272002350 -10191314 + AT_rich Low_complexity Low_complexity 1 21 0 181 273 0 18 chr1 272003019 272003074 -10190590 - L2 LINE L2 -4 3309 3256 233 200 0 67 chr1 272004024 272004099 -10189565 + T-rich Low_complexity Low_complexity 1 70 0 345 341 23 23 chr1 272004123 272004252 -10189412 - MIR SINE MIR -107 155 27 15813 117 37 29 chr1 272004332 272006730 -10186934 + Tigger1 DNA MER2_type 1 2418 0 798 181 0 8 chr1 272007613 272007740 -10185924 - FLAM_C SINE Alu -7 126 1 193 295 148 25 chr1 272008049 272008171 -10185493 + L2 LINE L2 2910 3046 -226 352 319 0 30 chr1 272008534 272008669 -10184995 + L2 LINE L2 2037 2167 -1147 405 267 200 7 chr1 272008674 272008824 -10184840 - MER5A DNA MER1_type -2 187 9 1518 265 160 7 chr1 272008852 272009391 -10184273 + L2 LINE L2 2186 2806 -508 365 231 0 83 chr1 272009418 272009526 -10184138 + MER5B DNA MER1_type 63 161 -17 307 367 0 0 chr1 272009521 272009641 -10184023 + L2 LINE L2 2799 2918 -396 * 226 286 48 12 chr1 272010092 272010176 -10183488 - HAL1 LINE L1 -5 2502 2416 596 287 66 6 chr1 272010772 272010953 -10182711 + MIR SINE MIR 13 204 -58 1628 118 75 47 chr1 272010953 272011232 -10182432 + AluJb SINE Alu 1 287 -25 2070 184 7 36 chr1 272011271 272011721 -10181943 + L1MB4 LINE L1 5744 6180 0 486 131 12 12 chr1 272011724 272011808 -10181856 + L1MB8 LINE L1 6093 6176 -2 231 185 0 74 chr1 272011812 272011866 -10181798 + MIR SINE MIR 209 258 -4 2238 103 14 0 chr1 272012539 272012831 -10180833 + AluSx SINE Alu 5 300 -12 28 29 0 0 chr1 272012941 272012976 -10180688 + AT_rich Low_complexity Low_complexity 1 35 0 1826 142 66 81 chr1 272014035 272014445 -10179219 - MLT2D LTR ERVL -10 404 1 185 325 38 38 chr1 272015120 272015200 -10178464 + L3 LINE CR1 1479 1558 -19 2763 240 109 12 chr1 272015496 272016474 -10177190 - L1ME3A LINE L1 -9 6161 5100 1302 94 199 0 chr1 272016759 272016950 -10176714 + MER30 DNA MER1_type 1 229 -1 2140 76 17 31 chr1 272018114 272018426 -10175238 + AluY SINE Alu 1 308 0 750 275 31 9 chr1 272020066 272020288 -10173376 - MIR SINE MIR 0 262 36 2350 90 0 7 chr1 272020695 272020996 -10172668 - AluSx SINE Alu -13 299 1 24 32 0 0 chr1 272021416 272021447 -10172217 + AT_rich Low_complexity Low_complexity 1 31 0 321 289 12 0 chr1 272022107 272022190 -10171474 - MIR3 SINE MIR -4 204 121 271 331 146 54 chr1 272022480 272022610 -10171054 - L2 LINE L2 -2 3270 3129 3107 209 19 5 chr1 272022692 272023282 -10170382 - MER77 LTR ERV1 -6 599 2 209 233 0 0 chr1 272023323 272023366 -10170298 - L2 LINE L2 -215 3057 3015 335 333 0 11 chr1 272023723 272023810 -10169854 - L2 LINE L2 -1 3271 3186 259 368 37 0 chr1 272024827 272024963 -10168701 - MIR SINE MIR -3 259 119 242 259 0 35 chr1 272025214 272025299 -10168365 + CT-rich Low_complexity Low_complexity 2 83 0 299 252 158 55 chr1 272025573 272025749 -10167915 + MIR3 SINE MIR 5 189 -57 560 280 146 57 chr1 272027840 272028265 -10165399 - L2 LINE L2 -1 3271 2809 183 323 65 11 chr1 272030051 272030144 -10163520 - MIR SINE MIR -6 256 159 1841 145 0 32 chr1 272030493 272030803 -10162861 + AluJo SINE Alu 1 300 -12 639 274 49 10 chr1 272031713 272031917 -10161747 + MIR SINE MIR 41 252 -10 21 0 0 0 chr1 272032300 272032321 -10161343 + AT_rich Low_complexity Low_complexity 1 21 0 231 163 163 0 chr1 272032330 272032379 -10161285 + L2 LINE L2 3216 3272 0 418 294 34 17 chr1 272032448 272032567 -10161097 - L2 LINE L2 0 3313 3193 576 304 6 17 chr1 272034667 272034848 -10158816 + MIR3 SINE MIR 16 194 -14 309 234 16 0 chr1 272035211 272035275 -10158389 - L2 LINE L2 -1 3271 3207 390 42 0 0 chr1 272035604 272035652 -10158012 + (CA)n Simple_repeat Simple_repeat 1 48 0 2138 82 0 48 chr1 272036683 272037016 -10156648 - AluY SINE Alu 0 319 1 769 310 91 21 chr1 272037347 272037842 -10155822 + L1ME3 LINE L1 4480 5012 -1134 1088 313 73 13 chr1 272038131 272038668 -10154996 + L1ME3 LINE L1 5383 5951 -211 23 0 0 0 chr1 272038925 272038948 -10154716 + AT_rich Low_complexity Low_complexity 1 23 0 1509 177 70 12 chr1 272039837 272040181 -10153483 - MLT1A1 LTR MaLR -1 364 1 186 348 123 14 chr1 272040181 272040319 -10153345 + L2 LINE L2 2470 2622 -692 210 313 104 43 chr1 272040706 272040821 -10152843 + L2 LINE L2 3143 3264 -8 262 265 43 43 chr1 272040859 272040976 -10152688 + L2 LINE L2 3193 3309 -4 180 0 0 0 chr1 272041139 272041159 -10152505 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 928 156 44 12 chr1 272041289 272041449 -10152215 + FRAM SINE Alu 1 165 -1 2254 86 20 0 chr1 272042647 272042939 -10150725 + AluSp SINE Alu 1 298 -15 212 81 81 0 chr1 272043380 272043417 -10150247 + L2 LINE L2 3265 3304 -9 2325 110 7 0 chr1 272044446 272044756 -10148908 - AluSx SINE Alu 0 312 1 269 240 173 10 chr1 272045002 272045106 -10148558 - L2 LINE L2 0 3313 3193 403 301 14 0 chr1 272046542 272046688 -10146976 + MIR SINE MIR 80 227 -35 2453 125 75 8 chr1 272047087 272047486 -10146178 - MSTB LTR MaLR 0 426 1 237 158 26 0 chr1 272047638 272047676 -10145988 + MLT1D LTR MaLR 5 43 -462 872 165 55 0 chr1 272047676 272047858 -10145806 + L1MA8 LINE L1 5859 6050 -241 1200 142 103 26 chr1 272047858 272048091 -10145573 + MLT1D LTR MaLR 255 505 0 1863 145 28 42 chr1 272048190 272048572 -10145092 - L1MB3 LINE L1 -51 6132 5759 415 281 78 30 chr1 272048540 272048707 -10144957 - L1MEd LINE L1 -5487 632 458 * 904 188 201 5 chr1 272048734 272048963 -10144701 - L1P5 LINE L1 -373 5783 5600 2180 118 0 3 chr1 272048963 272049269 -10144395 - AluSx SINE Alu -7 305 1 243 0 0 0 chr1 272049269 272049296 -10144368 + (TTA)n Simple_repeat Simple_repeat 3 29 0 904 188 201 5 chr1 272049296 272049340 -10144324 - L1P5 LINE L1 -555 5601 5429 2002 155 35 37 chr1 272049480 272049584 -10144080 - L1MA4A LINE L1 -5 6298 6195 198 0 0 0 chr1 272049584 272049606 -10144058 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2192 109 0 7 chr1 272049606 272049890 -10143774 - AluSx SINE Alu -30 282 1 2002 155 35 37 chr1 272049890 272050190 -10143474 - L1MA4A LINE L1 -106 6197 5894 1986 156 0 10 chr1 272050648 272050820 -10142844 - AluSx SINE Alu -7 305 136 2141 83 0 0 chr1 272050820 272051085 -10142579 - AluY SINE Alu -12 299 35 1986 156 0 10 chr1 272051085 272051220 -10142444 - AluSx SINE Alu -176 136 1 1901 159 3 0 chr1 272051261 272051544 -10142120 + AluSx SINE Alu 1 284 -28 201 74 0 0 chr1 272051547 272051574 -10142090 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 262 311 45 15 chr1 272051650 272051782 -10141882 + MIR3 SINE MIR 15 150 -58 822 261 99 46 chr1 272052637 272053032 -10140632 - L1MEd LINE L1 -5701 418 3 1845 171 16 0 chr1 272053549 272053864 -10139800 - MLT1B LTR MaLR -63 327 8 2119 133 33 3 chr1 272054107 272054439 -10139225 + MLT1B LTR MaLR 1 342 -48 1148 205 25 11 chr1 272054439 272054717 -10138947 + L1MB8 LINE L1 5891 6172 -6 260 229 83 10 chr1 272054720 272054816 -10138848 + L1M4c LINE L1 1292 1394 -4990 2152 124 13 0 chr1 272054843 272055150 -10138514 + AluSx SINE Alu 2 312 0 271 236 29 0 chr1 272055306 272055380 -10138284 + L1M4c LINE L1 1481 1697 -4685 428 184 26 0 chr1 272055380 272055456 -10138208 - Tigger5 DNA MER2_type -4 2319 2242 339 231 39 0 chr1 272055440 272055518 -10138146 + Tigger5 DNA MER2_type 2236 2316 -7 * 315 192 0 0 chr1 272055521 272055573 -10138091 - Tigger5 DNA MER2_type -2244 79 28 3031 210 42 25 chr1 272055584 272055863 -10137801 + L1M4c LINE L1 1737 2010 -4553 790 180 19 109 chr1 272055863 272056119 -10137545 - MER106A DNA MER1_type -1 235 3 3031 210 42 25 chr1 272056119 272056639 -10137025 + L1M4c LINE L1 2010 2550 -4013 21 0 0 31 chr1 272056677 272056696 -10136968 + AT_rich Low_complexity Low_complexity 1 20 -11 2303 101 0 13 chr1 272056696 272057003 -10136661 - AluSg SINE Alu -7 303 1 21 0 0 31 chr1 272057003 272057015 -10136649 + AT_rich Low_complexity Low_complexity 20 31 0 2034 126 7 3 chr1 272057017 272057302 -10136362 - AluSx SINE Alu -26 286 1 1095 284 93 49 chr1 272057382 272058203 -10135461 + L1M4c LINE L1 3221 4004 -2378 3405 59 25 11 chr1 272058203 272058641 -10135023 + MLT2A1 LTR ERVL 1 444 0 1095 284 93 49 chr1 272058641 272058658 -10135006 + L1M4c LINE L1 4004 4019 -2363 315 0 0 0 chr1 272058658 272058693 -10134971 + (CA)n Simple_repeat Simple_repeat 1 35 0 1095 284 93 49 chr1 272058693 272058866 -10134798 + L1M4c LINE L1 4019 4183 -2199 1088 159 11 0 chr1 272058866 272059055 -10134609 - L1PA16 LINE L1 -16 6150 5960 1095 284 93 49 chr1 272059055 272059165 -10134499 + L1M4c LINE L1 4183 4394 -1988 859 199 27 21 chr1 272060145 272060331 -10133333 - L1ME LINE L1 -437 5727 5541 1671 149 16 106 chr1 272060381 272060403 -10133261 + L1MB1 LINE L1 5816 5838 -330 1549 193 4 0 chr1 272060403 272060683 -10132981 + AluJo SINE Alu 21 301 -11 1671 149 16 106 chr1 272060683 272060785 -10132879 + L1MB1 LINE L1 5838 5948 -220 2253 107 43 38 chr1 272060785 272061158 -10132506 + THE1C LTR MaLR 1 375 0 1671 149 16 106 chr1 272061158 272061420 -10132244 + L1MB1 LINE L1 5948 6168 0 1544 229 16 49 chr1 272061411 272061641 -10132023 + L1ME2 LINE L1 5724 5933 -231 * 1926 176 3 0 chr1 272061641 272061943 -10131721 + AluJo SINE Alu 1 303 -9 1544 229 16 49 chr1 272061943 272062158 -10131506 + L1ME2 LINE L1 5933 6154 -10 357 237 43 0 chr1 272062162 272062255 -10131409 + L1MC4a LINE L1 6344 6440 -1368 268 178 0 0 chr1 272062250 272062295 -10131369 + L1MC4 LINE L1 6504 6548 -1494 * 835 171 0 0 chr1 272063962 272064091 -10129573 - FLAM_A SINE Alu 0 133 5 206 239 0 0 chr1 272064258 272064304 -10129360 + L3 LINE CR1 1428 1473 -104 1935 140 46 37 chr1 272065352 272065703 -10127961 + THE1A LTR MaLR 2 355 0 2288 118 20 50 chr1 272065875 272066033 -10127631 - Tigger2 DNA MER2_type 0 2718 2557 2082 110 0 4 chr1 272066033 272066306 -10127358 + AluSp SINE Alu 1 272 -41 216 0 0 0 chr1 272066307 272066331 -10127333 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2288 118 20 50 chr1 272066331 272066567 -10127097 - Tigger2 DNA MER2_type -160 2558 2334 1454 209 63 48 chr1 272066607 272067016 -10126648 - MLT2B1 LTR ERVL -41 373 1 606 260 119 21 chr1 272067016 272067301 -10126363 + L2 LINE L2 2997 3309 -4 3330 154 40 18 chr1 272067590 272068187 -10125477 + MER4B LTR ERV1 1 610 0 2156 120 0 3 chr1 272068373 272068674 -10124990 - AluSx SINE Alu -12 300 1 1921 150 186 2 chr1 272069929 272070322 -10123342 - MLT1C LTR MaLR -2 465 1 522 127 13 0 chr1 272071097 272071176 -10122488 - AluJ/FRAM SINE Alu -16 296 217 267 191 0 0 chr1 272071177 272071219 -10122445 - AluY SINE Alu -125 176 135 1515 152 114 70 chr1 272071220 272071649 -10122015 - LTR7 LTR ERV1 -2 448 1 2647 94 48 33 chr1 272071649 272072240 -10121424 - HERVH LTR ERV1 0 7713 5600 3946 137 73 3 chr1 272072241 272072860 -10120804 - HERVH LTR ERV1 -2564 5149 4488 3503 97 4 4 chr1 272072862 272073356 -10120308 - HERVH LTR ERV1 -3720 3993 3500 861 150 27 0 chr1 272073355 272073502 -10120162 - HERVH LTR ERV1 -4423 3290 3140 * 19240 97 41 14 chr1 272073496 272076404 -10117260 - HERVH LTR ERV1 -4726 2987 1 1416 158 109 67 chr1 272076406 272076836 -10116828 - LTR7 LTR ERV1 -2 448 1 560 205 107 0 chr1 272076847 272076969 -10116695 - FLAM_C SINE Alu -1 142 8 290 236 109 27 chr1 272077057 272077167 -10116497 - L1ME LINE L1 -420 5701 5583 2072 127 40 0 chr1 272077275 272077575 -10116089 + AluSp SINE Alu 2 313 0 278 270 27 0 chr1 272078187 272078261 -10115403 + CT-rich Low_complexity Low_complexity 2 77 0 588 246 44 39 chr1 272078967 272079170 -10114494 + Zaphod DNA AcHobo 40 243 -3788 493 315 32 18 chr1 272079690 272079909 -10113755 + HAL1 LINE L1 1492 1713 -794 359 186 0 14 chr1 272080164 272080234 -10113430 - MER116 DNA Mariner 0 80 12 1245 199 111 8 chr1 272080735 272080997 -10112667 - MLT1A1 LTR MaLR -5 360 72 339 25 0 0 chr1 272081323 272081363 -10112301 + (TG)n Simple_repeat Simple_repeat 2 41 0 2426 135 9 0 chr1 272081374 272081721 -10111943 - MLT2D LTR ERVL -63 351 2 1530 140 0 0 chr1 272081947 272082190 -10111474 + AluJo SINE Alu 71 313 0 2452 88 0 0 chr1 272082195 272082501 -10111163 + AluSc SINE Alu 1 306 -3 181 357 0 14 chr1 272082542 272082612 -10111052 + MIR SINE MIR 25 93 -169 333 240 132 9 chr1 272082953 272083103 -10110561 + MIR3 SINE MIR 33 202 -6 313 348 22 7 chr1 272083897 272084035 -10109629 + MIR3 SINE MIR 21 160 -48 244 195 85 85 chr1 272084037 272084119 -10109545 - MER117 DNA MER1_type -2 195 114 2338 84 7 3 chr1 272084542 272084840 -10108824 + AluSq SINE Alu 1 299 -14 568 260 5 36 chr1 272084852 272085044 -10108620 - MIR SINE MIR -43 219 34 521 223 109 26 chr1 272086322 272086515 -10107149 + MIR SINE MIR 50 258 -4 196 182 0 45 chr1 272086627 272086671 -10106993 - L3 LINE CR1 -18 1559 1518 267 148 29 48 chr1 272086951 272087097 -10106567 + GA-rich Low_complexity Low_complexity 1 143 0 653 213 8 8 chr1 272087977 272088104 -10105560 - MER45A DNA AcHobo 0 178 52 1847 157 3 3 chr1 272088470 272088781 -10104883 + AluJb SINE Alu 1 287 -25 1942 145 0 7 chr1 272088785 272089089 -10104575 + AluSx SINE Alu 1 302 -10 189 0 0 0 chr1 272089144 272089165 -10104499 + (A)n Simple_repeat Simple_repeat 1 21 0 229 130 22 54 chr1 272089222 272089314 -10104350 + T-rich Low_complexity Low_complexity 2 90 0 267 130 0 37 chr1 272089333 272089387 -10104277 - Alu SINE Alu 0 302 251 181 253 137 53 chr1 272089570 272089665 -10103999 - L2 LINE L2 0 3272 3170 258 247 108 0 chr1 272089806 272089899 -10103765 + MIR SINE MIR 88 190 -72 2118 120 0 0 chr1 272090343 272090642 -10103022 + AluSq SINE Alu 1 299 -14 2010 183 18 0 chr1 272090643 272091026 -10102638 - MLT1B LTR MaLR 0 390 1 673 260 93 50 chr1 272092700 272093023 -10100641 - MLT1I LTR MaLR -62 347 11 485 254 85 54 chr1 272093268 272093754 -10099910 - L1MEc LINE L1 -4939 1299 785 354 313 78 22 chr1 272094252 272094501 -10099163 - L2 LINE L2 -272 3041 2780 3332 89 11 0 chr1 272094526 272094975 -10098689 + L1PA13 LINE L1 5710 6163 0 2159 98 0 0 chr1 272095327 272095614 -10098050 - AluSx SINE Alu -25 287 1 2139 104 17 0 chr1 272096641 272096940 -10096724 + AluSc SINE Alu 1 304 -5 1415 297 106 49 chr1 272097718 272098197 -10095467 - L2 LINE L2 -49 3264 2813 1477 157 63 52 chr1 272098197 272098372 -10095292 - AluJb SINE Alu 0 302 142 2203 94 0 10 chr1 272098372 272098679 -10094985 - AluSx SINE Alu -8 304 1 1477 157 63 52 chr1 272098679 272098823 -10094841 - AluJb SINE Alu -160 142 1 1415 297 106 49 chr1 272098823 272098901 -10094763 - L2 LINE L2 -500 2813 2741 938 182 6 0 chr1 272098901 272099060 -10094604 + FRAM SINE Alu 1 160 -6 1415 297 106 49 chr1 272099060 272099590 -10094074 - L2 LINE L2 -572 2741 2107 1486 173 22 26 chr1 272099592 272099904 -10093760 + AluJo SINE Alu 1 311 -1 1913 185 89 29 chr1 272099967 272100415 -10093249 - MLT1D LTR MaLR 0 505 31 2422 151 51 2 chr1 272100415 272100827 -10092837 + MSTB1 LTR MaLR 1 432 0 1602 144 21 28 chr1 272100940 272101224 -10092440 + AluJo SINE Alu 1 282 -30 319 356 14 27 chr1 272101258 272101404 -10092260 - L2 LINE L2 -1313 2001 1858 226 196 18 54 chr1 272101624 272101680 -10091984 + MLT1J2 LTR MaLR 267 320 -130 2835 143 22 20 chr1 272101786 272102242 -10091422 - MSTB2 LTR MaLR 0 457 1 237 108 0 0 chr1 272102645 272102682 -10090982 + (TC)n Simple_repeat Simple_repeat 1 37 0 305 361 45 19 chr1 272102682 272102837 -10090827 + L1MEd LINE L1 676 834 -5285 774 177 0 0 chr1 272102928 272103058 -10090606 + FLAM_A SINE Alu 4 133 0 189 320 39 82 chr1 272103152 272103383 -10090281 + L2 LINE L2 1 221 -3093 434 317 70 0 chr1 272103386 272103572 -10090092 + L2 LINE L2 3115 3313 0 502 295 78 62 chr1 272103807 272104308 -10089356 + HAL1 LINE L1 1185 1693 -814 601 154 27 13 chr1 272104659 272104808 -10088856 + CT-rich Low_complexity Low_complexity 1 151 0 1290 201 4 4 chr1 272105080 272105324 -10088340 + AluJb SINE Alu 2 245 -67 2005 103 41 0 chr1 272106627 272106918 -10086746 - AluSx SINE Alu -4 308 6 1024 251 125 35 chr1 272107356 272107819 -10085845 - MLT1D LTR MaLR 0 505 1 2053 158 27 33 chr1 272108304 272108672 -10084992 + MSTC LTR MaLR 1 366 -62 * 2233 106 6 30 chr1 272108656 272108985 -10084679 - MSTC LTR MaLR -62 366 46 670 145 53 15 chr1 272109006 272109137 -10084527 - FRAM SINE Alu 0 176 41 23 0 0 0 chr1 272109146 272109169 -10084495 + AT_rich Low_complexity Low_complexity 1 23 0 2168 114 3 0 chr1 272109171 272109477 -10084187 + AluSx SINE Alu 1 307 -5 229 221 115 39 chr1 272109488 272109592 -10084072 + L1ME4a LINE L1 5995 6106 -15 1914 137 10 0 chr1 272109608 272109900 -10083764 - AluSq SINE Alu -18 295 1 354 208 21 0 chr1 272110069 272110165 -10083499 + L2 LINE L2 2477 2574 -740 482 200 0 0 chr1 272110187 272110272 -10083392 - FLAM_A SINE Alu -12 130 46 558 251 232 23 chr1 272110344 272110786 -10082878 + L2 LINE L2 2618 3145 -168 279 143 89 18 chr1 272110787 272110843 -10082821 + L2 LINE L2 3254 3313 0 2106 100 0 0 chr1 272111566 272111890 -10081774 + AluSg SINE Alu 1 324 0 3321 225 18 21 chr1 272111890 272112760 -10080904 + L1M4 LINE L1 4504 5371 -775 2195 103 0 0 chr1 272112762 272113063 -10080601 + AluSx SINE Alu 5 305 -7 936 215 64 34 chr1 272113065 272113330 -10080334 + MLT1C LTR MaLR 195 467 0 1591 135 30 59 chr1 272113330 272113487 -10080177 + L1MC3 LINE L1 7299 7459 -326 1889 156 3 0 chr1 272113487 272113789 -10079875 + AluJb SINE Alu 1 303 -9 2208 103 0 0 chr1 272113789 272114091 -10079573 + AluSg SINE Alu 1 302 -8 228 35 0 0 chr1 272114091 272114120 -10079544 + (CA)n Simple_repeat Simple_repeat 2 30 0 1591 135 30 59 chr1 272114120 272114264 -10079400 + L1MC3 LINE L1 7456 7593 -192 934 143 93 11 chr1 272114265 272114447 -10079217 + L1MC2 LINE L1 6137 6333 -11 1075 252 114 37 chr1 272114811 272115425 -10078239 + L1ME3 LINE L1 5215 5886 -276 2236 99 3 0 chr1 272115553 272115857 -10077807 + AluSg SINE Alu 1 305 -5 1578 181 46 62 chr1 272116101 272116472 -10077192 - MLT1A1 LTR MaLR 0 365 1 195 42 0 0 chr1 272116826 272116850 -10076814 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1708 150 40 0 chr1 272116850 272117124 -10076540 - AluJb SINE Alu -27 285 1 2478 45 7 0 chr1 272117153 272117462 -10076202 + AluY SINE Alu 1 311 0 257 264 276 31 chr1 272117637 272117989 -10075675 - MLT1L LTR MaLR -69 546 109 329 294 59 74 chr1 272118112 272118319 -10075345 - MIR SINE MIR -21 241 39 1897 124 7 10 chr1 272119096 272119422 -10074242 + AluSx SINE Alu 1 312 0 431 313 52 0 chr1 272119564 272119679 -10073985 - L2 LINE L2 -4 3309 3189 919 143 0 14 chr1 272120055 272120202 -10073462 + AluJ SINE Alu 3 147 -165 862 191 0 0 chr1 272120646 272120798 -10072866 + AluJ SINE Alu 129 280 -32 191 156 44 0 chr1 272120820 272120865 -10072799 + GA-rich Low_complexity Low_complexity 3 49 0 324 0 0 0 chr1 272121596 272121632 -10072032 + (TG)n Simple_repeat Simple_repeat 2 37 0 914 239 49 40 chr1 272122154 272122467 -10071197 + LTR16A LTR ERVL 138 448 -2 1350 178 22 26 chr1 272122513 272122782 -10070882 + AluJo SINE Alu 11 278 -34 587 216 6 22 chr1 272122810 272122991 -10070673 + GA-rich Low_complexity Low_complexity 2 179 0 607 279 50 39 chr1 272123001 272123398 -10070266 + HERV16 LTR ERVL 23 479 -4517 2274 147 50 42 chr1 272123400 272123903 -10069761 + L1MB8 LINE L1 5672 6178 0 393 333 120 45 chr1 272124770 272125377 -10068287 + L2 LINE L2 1848 2500 -814 1669 195 0 3 chr1 272125651 272125949 -10067715 - AluJo SINE Alu -15 297 1 3895 195 31 50 chr1 272125986 272126885 -10066779 - L1MB7 LINE L1 -1 6183 5302 1889 155 0 0 chr1 272127012 272127309 -10066355 + AluSx SINE Alu 1 297 -15 335 287 52 11 chr1 272127472 272127646 -10066018 - L1ME3A LINE L1 -230 5940 5760 419 317 12 37 chr1 272127655 272127819 -10065845 + L2 LINE L2 2657 2816 -498 3696 258 57 59 chr1 272127866 272128129 -10065535 - L1MCc LINE L1 -4889 1534 1272 1372 224 3 14 chr1 272128129 272128423 -10065241 + AluJo SINE Alu 1 291 -21 3696 258 57 59 chr1 272128423 272130157 -10063507 - L1MCc LINE L1 -5151 1272 19 1377 252 67 72 chr1 272130311 272130684 -10062980 - HAL1 LINE L1 -7 2500 2131 1866 139 0 10 chr1 272130684 272130979 -10062685 - AluSx SINE Alu -20 292 1 1377 252 67 72 chr1 272130979 272131308 -10062356 - HAL1 LINE L1 -376 2131 1802 1926 149 121 40 chr1 272131318 272131714 -10061950 - MSTA LTR MaLR 0 428 1 2367 218 32 22 chr1 272131868 272132368 -10061296 + MLT2B2 LTR ERVL 3 507 -8 2567 231 138 82 chr1 272132373 272133742 -10059922 - HAL1 LINE L1 -885 1622 177 1022 156 11 0 chr1 272133804 272133990 -10059674 + AluJb SINE Alu 123 310 -2 1809 129 32 23 chr1 272134271 272134580 -10059084 + AluJo SINE Alu 1 312 0 224 342 0 13 chr1 272134596 272134672 -10058992 - L2 LINE L2 -3152 162 88 2960 139 50 2 chr1 272134943 272135439 -10058225 - LTR45 LTR ERV1 -3 522 3 2274 100 0 0 chr1 272135521 272135831 -10057833 + AluSx SINE Alu 1 310 -2 1389 142 0 0 chr1 272135943 272136148 -10057516 + AluJb SINE Alu 86 290 -22 497 205 8 0 chr1 272137770 272137897 -10055767 + GA-rich Low_complexity Low_complexity 1 128 0 2000 76 33 11 chr1 272137935 272138236 -10055428 + AluSx SINE Alu 2 308 0 1450 181 6 54 chr1 272139142 272139270 -10054394 + AluJo SINE Alu 1 134 -178 442 0 0 0 chr1 272139270 272139319 -10054345 + (TTTA)n Simple_repeat Simple_repeat 1 92 0 680 202 0 0 chr1 272139319 272139433 -10054231 - FLAM_C SINE Alu -17 116 3 1450 181 6 54 chr1 272139433 272139617 -10054047 + AluJo SINE Alu 132 299 -13 1562 150 44 3 chr1 272139624 272139918 -10053746 + L1MA4A LINE L1 5991 6296 -7 191 149 0 43 chr1 272140360 272140407 -10053257 + (GGA)n Simple_repeat Simple_repeat 2 46 0 192 209 0 0 chr1 272142225 272142268 -10051396 + L2 LINE L2 3271 3313 0 373 289 16 16 chr1 272142346 272142474 -10051190 + L2 LINE L2 3136 3263 -9 737 190 84 0 chr1 272142800 272142942 -10050722 + L1MB3 LINE L1 5660 5813 -370 1687 170 68 33 chr1 272143361 272143467 -10050197 + L1MB3 LINE L1 5804 5905 -278 2373 104 0 3 chr1 272143467 272143776 -10049888 + AluSx SINE Alu 1 308 -4 1687 170 68 33 chr1 272143776 272144034 -10049630 + L1MB3 LINE L1 5905 6181 -2 282 316 143 0 chr1 272144518 272144651 -10049013 + L2 LINE L2 3162 3313 0 417 20 0 0 chr1 272144662 272144712 -10048952 + (CA)n Simple_repeat Simple_repeat 2 51 0 2433 105 0 0 chr1 272144946 272145259 -10048405 - AluSq SINE Alu 0 313 1 200 214 43 43 chr1 272147369 272147439 -10046225 + L2 LINE L2 3198 3267 -5 2399 193 143 53 chr1 272147586 272148251 -10045413 + LTR8A LTR ERV1 1 725 -2 5106 142 23 30 chr1 272148266 272149175 -10044489 + MER4D LTR ERV1 1 903 0 274 323 40 0 chr1 272149383 272149482 -10044182 + MER34 LTR ERV1 1 103 -439 * 1439 196 97 72 chr1 272149481 272149955 -10043709 + LTR29 LTR ERV1 137 622 0 317 364 38 34 chr1 272151215 272151454 -10042210 - MIR SINE MIR -12 250 11 216 179 26 0 chr1 272151508 272151547 -10042117 + CT-rich Low_complexity Low_complexity 2 41 0 198 0 0 0 chr1 272152468 272152490 -10041174 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 711 144 87 64 chr1 272152620 272152793 -10040871 + MLT1C LTR MaLR 8 184 -283 1647 151 14 45 chr1 272152793 272153085 -10040579 + AluJo SINE Alu 2 284 -28 2082 199 65 49 chr1 272153122 272153597 -10040067 - L1MEc LINE L1 -801 5414 4948 641 219 8 0 chr1 272153597 272153716 -10039948 + FLAM_A SINE Alu 1 120 -13 2162 103 3 48 chr1 272153716 272154027 -10039637 - AluSq SINE Alu -16 297 1 2082 199 65 49 chr1 272154027 272154177 -10039487 - L1MEc LINE L1 -1266 4949 4778 1104 166 71 5 chr1 272154186 272154397 -10039267 - AluJb SINE Alu -1 311 87 2859 3 0 0 chr1 272154423 272154724 -10038940 + AluYa5 SINE Alu 1 301 -10 2052 137 17 0 chr1 272154733 272155025 -10038639 + AluSx SINE Alu 1 297 -15 5883 239 66 61 chr1 272155026 272155574 -10038090 - L1MEc LINE L1 -1460 4755 4211 3372 124 46 28 chr1 272155574 272156156 -10037508 + LTR49 LTR ERV1 1 593 -2 5883 239 66 61 chr1 272156156 272157013 -10036651 - L1MEc LINE L1 -2004 4211 3360 2113 138 3 0 chr1 272157013 272157311 -10036353 - AluSx SINE Alu -13 299 1 5883 239 66 61 chr1 272157311 272158357 -10035307 - L1MEc LINE L1 -2855 3360 2290 41064 50 23 49 chr1 272158946 272164908 -10028756 - L1P1 LINE L1 -351 5804 4 1495 181 97 32 chr1 272164913 272165355 -10028309 - L1MEc LINE L1 -4079 2317 1847 217 309 0 53 chr1 272165385 272165479 -10028185 + L2 LINE L2 2695 2783 -531 974 200 323 11 chr1 272166898 272167183 -10026481 + MLT1A2 LTR MaLR 1 374 0 252 227 15 15 chr1 272167266 272167332 -10026332 + CT-rich Low_complexity Low_complexity 4 69 0 306 0 0 0 chr1 272167332 272167366 -10026298 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 1691 177 3 32 chr1 272167959 272168275 -10025389 + AluJo SINE Alu 1 307 -5 221 374 97 17 chr1 272168723 272168961 -10024703 + L3 LINE CR1 198 454 -1123 2233 123 0 3 chr1 272169091 272169399 -10024265 + AluSq SINE Alu 3 309 -4 773 271 102 36 chr1 272169653 272170092 -10023572 - L2 LINE L2 -639 2675 2208 1933 117 13 23 chr1 272170156 272170463 -10023201 + AluSx SINE Alu 5 308 -4 519 189 0 0 chr1 272170630 272170725 -10022939 + MER53 DNA DNA 95 189 0 297 284 34 0 chr1 272172336 272172424 -10021240 + L2 LINE L2 3170 3260 -12 541 158 0 0 chr1 272173689 272173771 -10019893 - FRAM SINE Alu -22 154 73 854 280 49 79 chr1 272174029 272174536 -10019128 + MLT1J LTR MaLR 1 492 -19 528 288 122 9 chr1 272174790 272175012 -10018652 - MIR SINE MIR -14 248 2 512 271 4 86 chr1 272175356 272175625 -10018039 + L2 LINE L2 2823 3069 -244 903 87 0 0 chr1 272175659 272175785 -10017879 + (TTCC)n Simple_repeat Simple_repeat 2 127 0 180 0 0 0 chr1 272175789 272175809 -10017855 + (TTTTC)n Simple_repeat Simple_repeat 3 22 0 506 162 72 54 chr1 272175812 272175923 -10017741 - FLAM_A SINE Alu -29 113 1 394 236 236 0 chr1 272175925 272176090 -10017574 + L2 LINE L2 3109 3312 -1 2813 187 36 4 chr1 272177246 272177769 -10015895 - MER44D DNA MER2_type -8 597 3 234 284 269 0 chr1 272178243 272178384 -10015280 + MIR SINE MIR 72 250 -12 28 91 0 0 chr1 272179148 272179225 -10014439 + AT_rich Low_complexity Low_complexity 1 77 0 1573 179 45 24 chr1 272179291 272179582 -10014082 - AluJo SINE Alu -15 297 1 32 91 0 0 chr1 272179582 272179670 -10013994 + AT_rich Low_complexity Low_complexity 1 88 0 204 156 111 0 chr1 272181358 272181403 -10012261 + L2 LINE L2 3257 3306 -7 23 78 0 0 chr1 272182289 272182340 -10011324 + GC_rich Low_complexity Low_complexity 1 51 0 213 0 81 0 chr1 272183575 272183612 -10010052 + A-rich Low_complexity Low_complexity 2 41 0 205 138 0 0 chr1 272184776 272184805 -10008859 + (TTC)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr1 272185704 272185727 -10007937 + (T)n Simple_repeat Simple_repeat 1 23 0 391 232 7 84 chr1 272186813 272186955 -10006709 - MIR3 SINE MIR -9 199 69 322 198 30 20 chr1 272190974 272191075 -10002589 + CT-rich Low_complexity Low_complexity 4 105 0 435 208 0 46 chr1 272192876 272193049 -10000615 + C-rich Low_complexity Low_complexity 4 168 0 225 291 13 0 chr1 272193352 272193431 -10000233 - MIR SINE MIR -28 234 155 2312 112 0 0 chr1 272194526 272194831 -9998833 - AluSc SINE Alu -4 305 1 301 239 0 0 chr1 272195729 272195796 -9997868 - MIR SINE MIR -70 138 72 197 128 0 26 chr1 272196558 272196597 -9997067 + (CA)n Simple_repeat Simple_repeat 1 38 0 1855 171 31 26 chr1 272196615 272197000 -9996664 - MLT1B LTR MaLR 0 390 4 1151 100 7 0 chr1 272197242 272197424 -9996240 + AluSq SINE Alu 139 321 0 333 177 33 2 chr1 272197425 272197506 -9996158 - L1MB2 LINE L1 -160 6011 5927 2261 113 3 3 chr1 272197962 272198272 -9995392 + AluSx SINE Alu 1 310 -2 503 253 231 0 chr1 272198674 272198860 -9994804 + MIR SINE MIR 1 229 -33 2529 99 40 6 chr1 272198985 272199337 -9994327 + THE1B LTR MaLR 1 364 0 835 190 38 0 chr1 272199691 272199875 -9993789 - AluSg/x SINE Alu -16 294 104 24227 30 0 0 chr1 272199976 272202825 -9990839 - L1P LINE L1 -1746 4400 1552 1207 141 92 26 chr1 272205323 272205345 -9988319 + MLT1D LTR MaLR 1 20 -485 2455 107 41 11 chr1 272205345 272205709 -9987955 - THE1C LTR MaLR 0 375 1 1207 141 92 26 chr1 272205709 272205913 -9987751 + MLT1D LTR MaLR 20 242 -263 886 134 140 18 chr1 272205933 272206104 -9987560 + MLT1D LTR MaLR 312 503 -2 22 0 0 0 chr1 272207777 272207799 -9985865 + AT_rich Low_complexity Low_complexity 1 22 0 2313 62 0 56 chr1 272207799 272208103 -9985561 - AluY SINE Alu -24 287 1 268 304 94 0 chr1 272208142 272208280 -9985384 - MIR SINE MIR -12 250 100 548 122 11 11 chr1 272211216 272211306 -9982358 + AluJ/FLAM SINE Alu 2 91 -221 24 0 0 0 chr1 272211375 272211399 -9982265 + GC_rich Low_complexity Low_complexity 1 24 0 219 312 52 0 chr1 272212659 272212736 -9980928 - L3 LINE CR1 -1060 517 437 21 0 0 0 chr1 272212764 272212785 -9980879 + AT_rich Low_complexity Low_complexity 1 21 0 1811 232 122 61 chr1 272212989 272213792 -9979872 - L1ME3A LINE L1 -13 6157 5306 925 9 18 0 chr1 272213792 272213906 -9979758 + (TCTA)n Simple_repeat Simple_repeat 1 116 0 1152 201 28 0 chr1 272213917 272214131 -9979533 - AluJo SINE Alu -31 281 62 474 311 130 40 chr1 272214321 272214863 -9978801 - L1ME LINE L1 -4982 1088 528 279 0 0 0 chr1 272215001 272215032 -9978632 + (T)n Simple_repeat Simple_repeat 1 31 0 299 248 226 0 chr1 272215278 272215411 -9978253 - L1MD2 LINE L1 -2 6357 6195 2963 212 59 44 chr1 272215412 272215519 -9978145 - L1MD2 LINE L1 -217 6142 6038 2288 96 0 22 chr1 272215519 272215833 -9977831 - AluSg SINE Alu -3 307 1 2963 212 59 44 chr1 272215833 272215943 -9977721 - L1MD2 LINE L1 -321 6038 5931 2387 122 114 5 chr1 272215943 272216329 -9977335 - MSTA LTR MaLR 0 428 1 2963 212 59 44 chr1 272216329 272216886 -9976778 - L1MD2 LINE L1 -428 5931 5383 2335 81 13 0 chr1 272216886 272217184 -9976480 - AluY SINE Alu -8 303 2 2963 212 59 44 chr1 272217184 272218005 -9975659 - L1MD2 LINE L1 -976 5383 4514 1089 207 57 60 chr1 272220362 272220661 -9973003 - AluJb SINE Alu -3 299 2 359 215 0 0 chr1 272220764 272220820 -9972844 - AluJ/FLAM SINE Alu -216 86 31 3687 191 119 41 chr1 272220820 272221554 -9972110 - MER52A LTR ERV1 0 1755 1079 2355 100 0 0 chr1 272221554 272221854 -9971810 - AluSq SINE Alu -13 300 1 3687 191 119 41 chr1 272221854 272222609 -9971055 - MER52A LTR ERV1 -676 1079 1 2039 118 0 3 chr1 272223014 272223301 -9970363 + AluSx SINE Alu 20 305 -7 1300 151 20 77 chr1 272223762 272223921 -9969743 + MER33 DNA MER1_type 4 140 -2445 2056 120 21 3 chr1 272223921 272224212 -9969452 + AluSx SINE Alu 5 300 -12 1300 151 20 77 chr1 272224212 272224350 -9969314 + MER33 DNA MER1_type 140 284 -40 1754 131 11 32 chr1 272224372 272224655 -9969009 + AluJo SINE Alu 11 287 -25 597 0 0 0 chr1 272225593 272225662 -9968002 + L1P LINE L1 3 71 -6075 347 221 7 88 chr1 272227955 272228091 -9965573 + MIR3 SINE MIR 69 193 -15 234 0 0 0 chr1 272229184 272229210 -9964454 + (A)n Simple_repeat Simple_repeat 1 26 0 1689 194 0 7 chr1 272230473 272230762 -9962902 - AluJo SINE Alu -25 287 1 557 263 76 5 chr1 272230997 272231195 -9962469 - MIR SINE MIR -27 235 24 236 98 0 24 chr1 272231568 272231609 -9962055 + (TTC)n Simple_repeat Simple_repeat 2 41 0 1921 141 4 0 chr1 272231633 272231910 -9961754 - AluSx SINE Alu -34 278 1 225 0 0 0 chr1 272232524 272232549 -9961115 + (A)n Simple_repeat Simple_repeat 1 25 0 278 149 0 68 chr1 272233163 272233237 -9960427 + (TA)n Simple_repeat Simple_repeat 2 70 0 207 69 0 0 chr1 272233314 272233343 -9960321 + (TC)n Simple_repeat Simple_repeat 1 29 0 247 255 29 39 chr1 272233807 272233909 -9959755 - MIR SINE MIR -2 260 160 297 0 0 0 chr1 272234213 272234246 -9959418 + (TA)n Simple_repeat Simple_repeat 2 34 0 541 254 16 0 chr1 272235550 272235676 -9957988 - MER33 DNA MER1_type -193 131 4 492 158 11 42 chr1 272237448 272237543 -9956121 - AluSg/x SINE Alu -21 291 200 504 293 54 33 chr1 272238873 272239115 -9954549 - L2 LINE L2 -15 3298 3052 1040 126 0 0 chr1 272239115 272239250 -9954414 + AluSq/x SINE Alu 1 135 -178 2074 123 10 19 chr1 272239250 272239558 -9954106 + AluSx SINE Alu 1 305 -7 1001 284 105 34 chr1 272239568 272240316 -9953348 - L2 LINE L2 -248 3065 2254 1616 147 120 33 chr1 272240385 272240718 -9952946 - MLT1A1 LTR MaLR -3 362 1 2376 37 4 0 chr1 272240978 272241248 -9952416 + AluY SINE Alu 40 310 -1 282 196 31 0 chr1 272242838 272242935 -9950729 + (TA)n Simple_repeat Simple_repeat 1 100 0 235 213 107 27 chr1 272242935 272243010 -9950654 - L1MD1 LINE L1 -15 6227 6147 483 0 0 0 chr1 272243393 272243449 -9950215 + AluY SINE Alu 240 295 -15 691 175 0 0 chr1 272243859 272243979 -9949685 - MER5A DNA MER1_type -5 184 65 1003 59 37 0 chr1 272243979 272244114 -9949550 - L1PA2 LINE L1 0 6155 6016 1379 63 0 0 chr1 272244216 272244391 -9949273 - L1PA2 LINE L1 -141 6014 5840 257 216 0 0 chr1 272244391 272244442 -9949222 - MER5A DNA MER1_type -133 56 6 2005 101 0 11 chr1 272245154 272245421 -9948243 + AluSx SINE Alu 39 302 -10 2287 91 7 3 chr1 272245924 272246222 -9947442 - AluSq SINE Alu -14 299 1 189 0 0 0 chr1 272246380 272246401 -9947263 + (A)n Simple_repeat Simple_repeat 1 21 0 2221 121 3 16 chr1 272246998 272247313 -9946351 - AluSx SINE Alu -1 311 1 725 239 15 24 chr1 272248499 272248704 -9944960 + MIR SINE MIR 5 207 -55 223 261 96 43 chr1 272250118 272250233 -9943431 - L2 LINE L2 -18 3254 3134 279 114 17 0 chr1 272250248 272250301 -9943363 - MLT2D LTR ERVL 0 414 378 222 191 0 0 chr1 272250327 272250374 -9943290 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1913 151 127 52 chr1 272250396 272250820 -9942844 - MLT2B1 LTR ERVL -64 456 1 198 340 91 39 chr1 272250968 272251200 -9942464 - L2 LINE L2 -353 2961 2718 967 41 48 0 chr1 272251382 272251529 -9942135 + (TTCTC)n Simple_repeat Simple_repeat 5 158 0 2101 115 3 3 chr1 272251530 272251816 -9941848 - AluSx SINE Alu -26 286 1 333 177 33 2 chr1 272252272 272252353 -9941311 + L1MB2 LINE L1 5927 6011 -160 1150 100 7 0 chr1 272252354 272252536 -9941128 - AluSq SINE Alu 0 321 139 1883 166 31 26 chr1 272252778 272253163 -9940501 + MLT1B LTR MaLR 4 390 0 237 132 0 0 chr1 272253181 272253219 -9940445 + (TG)n Simple_repeat Simple_repeat 1 38 0 423 286 71 19 chr1 272253819 272254029 -9939635 + MIR SINE MIR 31 251 -11 403 266 6 46 chr1 272254295 272254457 -9939207 + MIR SINE MIR 37 190 -66 285 98 0 0 chr1 272254801 272254842 -9938822 + (TG)n Simple_repeat Simple_repeat 2 42 0 365 317 84 71 chr1 272255510 272255892 -9937772 + L3 LINE CR1 326 712 -865 2158 103 7 0 chr1 272256172 272256485 -9937179 + AluSx SINE Alu 1 315 0 21 0 0 0 chr1 272256658 272256679 -9936985 + AT_rich Low_complexity Low_complexity 1 21 0 440 210 62 92 chr1 272256876 272257071 -9936593 + MER112 DNA MER1_type 1 189 -71 1808 179 3 10 chr1 272257074 272257382 -9936282 + AluJo SINE Alu 1 306 -6 2588 11 0 0 chr1 272257420 272257696 -9935968 - AluYb8 SINE Alu -4 314 39 491 266 22 14 chr1 272258002 272258141 -9935523 - L3 LINE CR1 -7 1570 1431 1264 208 25 45 chr1 272258141 272258469 -9935195 - MLT1D LTR MaLR 0 505 205 232 191 22 135 chr1 272258464 272258553 -9935111 - MLT1D LTR MaLR -407 98 20 * 2445 80 0 0 chr1 272259723 272260022 -9933642 + AluSx SINE Alu 1 299 -13 1110 268 58 44 chr1 272260044 272260495 -9933169 + LTR16B LTR ERVL 1 457 -7 30 0 0 0 chr1 272260523 272260553 -9933111 + AT_rich Low_complexity Low_complexity 1 30 0 10504 25 10 165 chr1 272260553 272262186 -9931478 - SVA Other Other -3 1383 4 1677 250 50 56 chr1 272262241 272262866 -9930798 - L2 LINE L2 -415 2899 2279 574 247 29 35 chr1 272262860 272263030 -9930634 + L2 LINE L2 2544 2712 -602 * 244 315 37 28 chr1 272263030 272263138 -9930526 + L1MCc LINE L1 862 970 -5961 296 132 179 0 chr1 272263328 272263401 -9930263 + L1MA9 LINE L1 5702 5789 -508 218 125 94 0 chr1 272263414 272263478 -9930186 + (TATAA)n Simple_repeat Simple_repeat 2 71 0 2526 144 45 47 chr1 272263487 272264020 -9929644 + L1MA9 LINE L1 5776 6307 -5 2041 121 57 0 chr1 272264201 272264481 -9929183 + AluSg SINE Alu 1 296 -14 2249 262 54 35 chr1 272264669 272265446 -9928218 + L1MCc LINE L1 822 1632 -5168 2069 227 43 41 chr1 272265446 272265498 -9928166 + MLT1F LTR MaLR 3 53 -489 1691 190 0 10 chr1 272265498 272265793 -9927871 - AluJo SINE Alu -20 292 1 2069 227 43 41 chr1 272265793 272266278 -9927386 + MLT1F LTR MaLR 53 541 -1 2249 262 54 35 chr1 272266278 272266566 -9927098 + L1MCc LINE L1 1632 1913 -4887 200 263 141 0 chr1 272266568 272266667 -9926997 - L2 LINE L2 -1938 1376 1264 494 292 116 27 chr1 272266699 272267106 -9926558 - L2 LINE L2 -2176 1138 696 2050 104 79 0 chr1 272267436 272267716 -9925948 + AluSg SINE Alu 1 302 -8 2516 102 40 6 chr1 272268070 272268422 -9925242 - THE1B LTR MaLR 0 364 1 486 237 242 11 chr1 272268547 272268733 -9924931 - MIR SINE MIR -33 229 1 2304 83 13 29 chr1 272269135 272269449 -9924215 - AluY SINE Alu -2 309 1 2407 98 0 3 chr1 272270507 272270813 -9922851 + AluSx SINE Alu 1 305 -7 2065 121 0 4 chr1 272271790 272272102 -9921562 - AluSx SINE Alu 0 315 5 3720 170 98 8 chr1 272272548 272273290 -9920374 + L1MB8 LINE L1 5365 6173 -5 363 268 77 49 chr1 272273505 272273688 -9919976 - Tigger8 DNA MER2_type -351 315 128 360 305 24 33 chr1 272274704 272274917 -9918747 - L1ME LINE L1 -351 5811 5601 * 735 283 20 4 chr1 272274914 272275165 -9918499 - L1ME LINE L1 -1979 4167 3913 2376 156 32 15 chr1 272275299 272275703 -9917961 - LTR57 LTR ERVL 0 411 1 200 331 83 14 chr1 272276971 272277116 -9916548 + L2 LINE L2 2701 2855 -459 314 314 22 7 chr1 272277382 272277519 -9916145 + LTR16A1 LTR ERVL 319 457 0 3168 184 85 5 chr1 272277553 272277649 -9916015 - MER67C LTR ERV1 0 710 623 2094 118 0 0 chr1 272277649 272277921 -9915743 + AluSg SINE Alu 28 299 -11 3168 184 85 5 chr1 272277921 272278481 -9915183 - MER67C LTR ERV1 -87 623 1 1872 40 0 9 chr1 272278779 272279006 -9914658 + L1PA7 LINE L1 5930 6154 0 617 287 57 11 chr1 272279038 272279303 -9914361 - L1ME3A LINE L1 -272 5898 5622 2139 68 7 4 chr1 272282021 272282300 -9911364 + L1PA8 LINE L1 5887 6166 -6 238 236 14 0 chr1 272282309 272282381 -9911283 + L1MC4 LINE L1 6614 6686 -1356 236 304 152 14 chr1 272282429 272282567 -9911097 + MIR SINE MIR 20 176 -86 373 117 0 33 chr1 272283021 272283081 -9910583 + AluJb SINE Alu 76 133 -169 251 0 0 56 chr1 272283081 272283117 -9910547 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 412 293 105 39 chr1 272283798 272284027 -9909637 - MIR SINE MIR -6 256 13 216 329 57 0 chr1 272284201 272284271 -9909393 + L2 LINE L2 3169 3242 -30 203 162 0 0 chr1 272284328 272284365 -9909299 + (CAA)n Simple_repeat Simple_repeat 2 38 0 6130 77 9 8 chr1 272285614 272286419 -9907245 - L1PA10 LINE L1 0 6168 5363 2325 124 16 0 chr1 272286419 272286782 -9906882 + L1PA10 LINE L1 4978 5346 -800 776 150 17 0 chr1 272288310 272288430 -9905234 + FLAM_A SINE Alu 3 124 -9 2294 91 7 3 chr1 272288942 272289239 -9904425 - AluY SINE Alu 0 311 14 529 151 92 0 chr1 272289998 272290117 -9903547 + L1MB4 LINE L1 6051 6180 0 369 219 115 10 chr1 272290175 272290271 -9903393 - MER103 DNA DNA -47 119 14 203 362 29 9 chr1 272290511 272290616 -9903048 + MIR SINE MIR 37 143 -65 4898 131 14 47 chr1 272290622 272290790 -9902874 + L1MA4 LINE L1 5451 5623 -677 2615 80 0 0 chr1 272290790 272291102 -9902562 + AluSx SINE Alu 1 312 0 4898 131 14 47 chr1 272291102 272291812 -9901852 + L1MA4 LINE L1 5623 6300 0 256 220 200 0 chr1 272291853 272291953 -9901711 + MIR SINE MIR 137 256 -6 235 381 68 0 chr1 272292448 272292566 -9901098 + L2 LINE L2 3147 3272 0 2204 82 7 17 chr1 272292778 272293070 -9900594 + AluSp SINE Alu 1 289 -24 734 158 0 38 chr1 272293316 272293449 -9900215 + FLAM_C SINE Alu 1 128 -15 21 0 0 0 chr1 272294624 272294645 -9899019 + AT_rich Low_complexity Low_complexity 1 21 0 198 289 0 0 chr1 272295697 272295742 -9897922 - L2 LINE L2 -1 3271 3227 694 161 24 0 chr1 272296368 272296492 -9897172 + MER34C LTR ERV1 1 127 -458 1899 125 49 7 chr1 272298126 272298413 -9895251 + AluSx SINE Alu 1 299 -13 1113 139 90 20 chr1 272299091 272299292 -9894372 - AluJo SINE Alu -11 301 87 22 56 0 0 chr1 272299642 272299678 -9893986 + AT_rich Low_complexity Low_complexity 1 36 0 690 203 8 8 chr1 272299702 272299835 -9893829 + FLAM_C SINE Alu 1 133 -10 1412 184 26 35 chr1 272299840 272300150 -9893514 + AluJo SINE Alu 1 307 -5 819 213 41 30 chr1 272301839 272302008 -9891656 - FAM SINE Alu 0 175 5 22 56 0 0 chr1 272303239 272303275 -9890389 + AT_rich Low_complexity Low_complexity 1 36 0 2302 84 27 3 chr1 272303409 272303708 -9889956 - AluSg SINE Alu -4 306 1 576 296 62 77 chr1 272304069 272304535 -9889129 - L2 LINE L2 -19 3294 2836 1921 77 0 0 chr1 272305130 272305363 -9888301 + AluY SINE Alu 62 294 -17 192 204 9 195 chr1 272307125 272307238 -9886426 - MIR SINE MIR -67 195 104 649 288 10 26 chr1 272307396 272307630 -9886034 + MIR SINE MIR 30 258 -4 2435 50 0 10 chr1 272307890 272308189 -9885475 + AluY SINE Alu 1 296 -15 1831 145 13 36 chr1 272310065 272310369 -9883295 + AluJo SINE Alu 1 297 -15 223 94 19 19 chr1 272310369 272310422 -9883242 + (TA)n Simple_repeat Simple_repeat 2 54 0 219 36 0 0 chr1 272310677 272310705 -9882959 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 923 289 52 14 chr1 272311661 272312028 -9881636 - L1ME3A LINE L1 -225 5945 5565 538 266 99 21 chr1 272312096 272312378 -9881286 - L1ME3A LINE L1 -568 5596 5293 409 258 114 114 chr1 272312420 272312568 -9881096 - L1ME3A LINE L1 -924 5222 5075 405 0 0 0 chr1 272312568 272312613 -9881051 + (TG)n Simple_repeat Simple_repeat 2 46 0 409 258 114 114 chr1 272312613 272312686 -9880978 - L1ME3A LINE L1 -1071 5075 5003 1546 167 80 7 chr1 272312686 272312962 -9880702 + AluJo SINE Alu 1 296 -16 409 258 114 114 chr1 272312962 272313267 -9880397 - L1ME3A LINE L1 -1142 5004 4695 186 277 143 42 chr1 272313648 272313767 -9879897 - MIR SINE MIR -3 259 129 342 209 22 44 chr1 272314724 272314815 -9878849 + L1MC4 LINE L1 6615 6703 -1339 321 326 0 0 chr1 272314739 272314831 -9878833 - L1MC4 LINE L1 -1337 6705 6614 * 441 180 0 0 chr1 272314832 272314921 -9878743 + (TA)n Simple_repeat Simple_repeat 1 89 0 211 244 35 23 chr1 272314929 272315101 -9878563 + (TAA)n Simple_repeat Simple_repeat 3 176 0 553 276 113 15 chr1 272315147 272315160 -9878504 - MIR SINE MIR -31 231 221 2224 127 0 0 chr1 272315160 272315468 -9878196 - AluSx SINE Alu -3 309 2 553 276 113 15 chr1 272315468 272315657 -9878007 - MIR SINE MIR -41 221 9 2194 96 0 0 chr1 272316289 272316613 -9877051 - AluSg SINE Alu 0 324 1 287 241 165 25 chr1 272316755 272316913 -9876751 - L1ME3A LINE L1 -219 5951 5772 320 363 41 7 chr1 272316983 272317129 -9876535 - L2 LINE L2 -458 2856 2706 204 354 94 47 chr1 272317443 272317720 -9875944 - L2 LINE L2 -1177 2137 1848 22 0 0 0 chr1 272318959 272318981 -9874683 + AT_rich Low_complexity Low_complexity 1 22 0 1774 163 21 0 chr1 272319071 272319359 -9874305 - AluJo SINE Alu -18 294 1 912 122 30 0 chr1 272319359 272319490 -9874174 - AluJo SINE Alu -177 135 1 200 211 0 0 chr1 272320380 272320418 -9873246 + CT-rich Low_complexity Low_complexity 1 38 0 1805 101 116 11 chr1 272321366 272321633 -9872031 - AluSg SINE Alu -15 295 1 2025 149 3 3 chr1 272321636 272321937 -9871727 - AluJb SINE Alu -11 301 1 332 155 107 12 chr1 272322641 272322725 -9870939 + MIR SINE MIR 137 228 -34 1679 81 0 5 chr1 272322751 272322960 -9870704 - AluSq SINE Alu -6 307 100 2283 188 9 47 chr1 272323070 272323622 -9870042 - L1MB2 LINE L1 -2 6169 5639 1183 223 25 45 chr1 272323636 272323990 -9869674 + MLT1A1 LTR MaLR 19 365 0 1712 142 59 24 chr1 272323994 272324056 -9869608 - L1MB2 LINE L1 -532 5639 5581 2115 113 3 49 chr1 272324056 272324382 -9869282 - AluSq SINE Alu -2 311 1 1712 142 59 24 chr1 272324382 272324692 -9868972 - L1MB2 LINE L1 -590 5581 5254 1119 226 92 16 chr1 272324716 272325021 -9868643 - MER2 DNA MER2_type -16 329 2 2779 188 23 12 chr1 272325029 272325678 -9867986 - L1MB2 LINE L1 -912 5234 4579 275 350 17 17 chr1 272326250 272326367 -9867297 - MIR SINE MIR -72 136 20 2316 84 0 34 chr1 272326386 272326709 -9866955 - AluSx SINE Alu 0 312 1 1068 68 0 8 chr1 272327235 272327368 -9866296 + AluY SINE Alu 1 132 -179 195 42 0 0 chr1 272327368 272327392 -9866272 + (A)n Simple_repeat Simple_repeat 1 24 0 2222 72 24 7 chr1 272327392 272327683 -9865981 + AluY SINE Alu 1 296 -15 245 193 18 18 chr1 272329173 272329230 -9864434 + L2 LINE L2 3210 3266 -6 2042 112 4 0 chr1 272329490 272329758 -9863906 - AluSp SINE Alu -41 272 4 529 309 89 32 chr1 272329853 272330099 -9863565 + MIR SINE MIR 3 262 0 941 304 94 11 chr1 272330860 272331498 -9862166 - L1M4 LINE L1 -1367 4779 4089 1892 176 36 36 chr1 272333361 272333913 -9859751 - MLT2A2 LTR ERVL 0 554 1 684 281 63 23 chr1 272334172 272334393 -9859271 - MIR SINE MIR -10 252 23 2039 138 0 3 chr1 272334474 272334770 -9858894 - AluSx SINE Alu -17 295 1 1997 147 0 0 chr1 272336621 272336913 -9856751 - AluSx SINE Alu -20 292 1 223 224 9 84 chr1 272337430 272337537 -9856127 + MIR SINE MIR 164 262 0 401 271 100 28 chr1 272337567 272337818 -9855846 + L1ME LINE L1 5474 5742 -379 1376 206 47 77 chr1 272337903 272338219 -9855445 - L1ME2 LINE L1 0 6164 5867 2190 108 7 0 chr1 272338219 272338514 -9855150 - AluSx SINE Alu -15 297 1 1376 206 47 77 chr1 272338514 272338688 -9854976 - L1ME2 LINE L1 -297 5867 5689 228 122 0 0 chr1 272338692 272338733 -9854931 + (A)n Simple_repeat Simple_repeat 1 41 0 263 299 57 71 chr1 272339008 272339219 -9854445 - L2 LINE L2 -23 3249 3042 324 296 99 7 chr1 272340801 272340943 -9852721 - L1ME4a LINE L1 -263 5858 5704 723 127 87 8 chr1 272341241 272341367 -9852297 + AluJ SINE Alu 1 136 -176 982 193 139 32 chr1 272341386 272341488 -9852176 + MLT1A1 LTR MaLR 56 146 -219 2005 132 0 7 chr1 272341488 272341769 -9851895 + AluSx SINE Alu 1 279 -33 982 193 139 32 chr1 272341769 272341946 -9851718 + MLT1A1 LTR MaLR 146 365 0 494 128 0 0 chr1 272342021 272342099 -9851565 + MADE1 DNA Mariner 1 78 -2 1802 177 23 20 chr1 272342763 272343113 -9850551 - L1MA9 LINE L1 -3 6309 5959 465 19 0 0 chr1 272343145 272343199 -9850465 + (TA)n Simple_repeat Simple_repeat 1 54 0 25 31 0 0 chr1 272343228 272343260 -9850404 + AT_rich Low_complexity Low_complexity 1 32 0 * 224 280 34 8 chr1 272343248 272343366 -9850298 + (TA)n Simple_repeat Simple_repeat 1 121 0 279 0 0 0 chr1 272343706 272343737 -9849927 + (TG)n Simple_repeat Simple_repeat 2 32 0 1931 161 0 10 chr1 272343793 272344091 -9849573 + AluJo SINE Alu 1 295 -17 574 239 82 26 chr1 272344201 272344469 -9849195 - L1ME4a LINE L1 -35 6086 5804 257 347 42 0 chr1 272345672 272345767 -9847897 - MIR SINE MIR -67 141 43 388 196 182 15 chr1 272346535 272346670 -9846994 - L1P3 LINE L1 -353 5819 5661 715 184 86 37 chr1 272346681 272346844 -9846820 + AluJ SINE Alu 127 297 -15 2250 86 11 0 chr1 272346993 272347293 -9846371 - AluSx SINE Alu 0 303 1 1937 165 0 0 chr1 272347408 272347699 -9845965 - AluJo SINE Alu -21 291 1 22 35 0 0 chr1 272347974 272348003 -9845661 + AT_rich Low_complexity Low_complexity 1 29 0 263 297 59 0 chr1 272348017 272348118 -9845546 - L1P LINE L1 -1135 5011 4905 2193 142 0 0 chr1 272348130 272348441 -9845223 - AluSx SINE Alu -1 311 1 2147 172 80 5 chr1 272348492 272348894 -9844770 - MSTB1 LTR MaLR 0 432 1 389 103 17 0 chr1 272349491 272349549 -9844115 + Tigger7 DNA MER2_type 980 1038 -1449 387 131 16 0 chr1 272349546 272349607 -9844057 + Tigger7 DNA MER2_type 2484 2545 -42 * 2052 106 12 47 chr1 272350676 272350998 -9842666 + AluSx SINE Alu 1 311 -1 200 274 0 20 chr1 272351114 272351165 -9842499 + L2 LINE L2 3262 3311 -2 491 246 71 16 chr1 272351676 272351802 -9841862 + MIR SINE MIR 38 170 -92 198 229 0 0 chr1 272351819 272351854 -9841810 + L2 LINE L2 3221 3255 -17 220 326 174 14 chr1 272352580 272352718 -9840946 - MIR SINE MIR -15 247 88 411 307 145 41 chr1 272353073 272353231 -9840433 - MLT1L LTR MaLR -4 611 471 2240 98 3 19 chr1 272353231 272353538 -9840126 - AluSx SINE Alu -10 302 1 411 307 145 41 chr1 272353538 272353773 -9839891 - MLT1L LTR MaLR -144 471 177 256 276 0 0 chr1 272354109 272354167 -9839497 - L2 LINE L2 -1 3312 3255 2045 195 64 79 chr1 272354275 272354835 -9838829 + MLT2B3 LTR ERVL 3 554 0 182 242 220 11 chr1 272354836 272354927 -9838737 - MIR SINE MIR -29 233 124 1864 93 0 27 chr1 272355066 272355323 -9838341 + AluSx SINE Alu 40 289 -23 212 0 36 0 chr1 272355331 272355359 -9838305 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2434 61 3 0 chr1 272356353 272356646 -9837018 + AluY SINE Alu 1 294 -17 2115 105 3 14 chr1 272357004 272357318 -9836346 + AluSp SINE Alu 1 311 0 1051 197 217 16 chr1 272357371 272357675 -9835989 - MLT1A1 LTR MaLR 0 365 1 1137 154 29 19 chr1 272358316 272358524 -9835140 + Tigger2 DNA MER2_type 1 210 -2508 892 150 6 84 chr1 272358523 272358690 -9834974 + Tigger2 DNA MER2_type 2564 2717 -1 * 748 218 111 13 chr1 272358714 272358796 -9834868 - MIR SINE MIR 0 262 189 1609 199 7 20 chr1 272358796 272359092 -9834572 + AluJo SINE Alu 1 292 -20 748 218 111 13 chr1 272359092 272359243 -9834421 - MIR SINE MIR -73 189 6 1881 133 127 30 chr1 272359512 272359844 -9833820 - THE1B LTR MaLR 0 364 1 2297 112 0 0 chr1 272359995 272360290 -9833374 + AluSg SINE Alu 1 295 -15 1936 139 7 16 chr1 272360984 272361294 -9832370 - AluSx SINE Alu -5 307 1 1178 184 60 4 chr1 272361329 272361563 -9832101 + L1MA7 LINE L1 6002 6248 -43 453 234 28 0 chr1 272361582 272361689 -9831975 - MER58A DNA MER1_type 0 133 24 3017 164 28 63 chr1 272361696 272362199 -9831465 + MER6A DNA MER2_type 11 490 -375 3824 92 0 2 chr1 272362199 272362702 -9830962 - L1PB1 LINE L1 -1 6150 5649 3017 164 28 63 chr1 272362702 272362815 -9830849 + MER6A DNA MER2_type 490 605 0 771 211 62 0 chr1 272362827 272362988 -9830676 + MIR SINE MIR 1 171 -91 235 265 140 0 chr1 272363162 272363298 -9830366 - MIR SINE MIR -17 245 82 1946 141 3 33 chr1 272364858 272365163 -9828501 + AluSx SINE Alu 1 296 -16 887 158 0 23 chr1 272365522 272365678 -9827986 - FLAM_A SINE Alu 0 156 4 4264 199 39 30 chr1 272366285 272367139 -9826525 + MER21B LTR ERV1 2 862 -1 1285 133 37 133 chr1 272367890 272368213 -9825451 - AluYb8 SINE Alu -26 292 1 222 342 0 0 chr1 272370736 272370815 -9822849 - MIR SINE MIR -64 144 66 196 294 128 18 chr1 272370899 272371008 -9822656 + L3b LINE CR1 1313 1433 -150 1976 156 89 9 chr1 272371122 272371469 -9822195 + THE1C LTR MaLR 1 375 0 4769 137 30 65 chr1 272371572 272372205 -9821459 + MER4D LTR ERV1 1 594 -309 1528 150 45 54 chr1 272372205 272372518 -9821146 - AluJb SINE Alu -2 310 1 4769 137 30 65 chr1 272372518 272372808 -9820856 + MER4D LTR ERV1 594 892 -11 2203 190 126 37 chr1 272373450 272374012 -9819652 - LTR9 LTR ERV1 0 612 1 33 0 0 0 chr1 272374847 272374880 -9818784 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr1 272374914 272374939 -9818725 + (A)n Simple_repeat Simple_repeat 1 25 0 226 275 33 44 chr1 272374945 272375036 -9818628 + L3 LINE CR1 1481 1570 -7 265 247 62 0 chr1 272375483 272375564 -9818100 - HsTC2 DNA Tc2 -1808 90 5 2922 152 19 30 chr1 272375728 272376263 -9817401 - MER41B LTR ERV1 -9 600 100 183 42 0 0 chr1 272376444 272376468 -9817196 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 372 322 70 14 chr1 272376523 272376666 -9816998 - MIR3 SINE MIR -28 180 30 742 234 52 40 chr1 272377074 272377299 -9816365 - MLT1K LTR MaLR 0 588 361 2755 162 56 26 chr1 272377299 272377837 -9815827 - MER21A LTR ERV1 0 931 378 1285 117 60 75 chr1 272377846 272378112 -9815552 - MER21A LTR ERV1 -669 262 1 300 315 92 0 chr1 272378119 272378249 -9815415 - MLT1K LTR MaLR -231 357 216 2485 146 8 36 chr1 272378540 272379064 -9814600 + LTR9 LTR ERV1 1 610 -2 1465 156 0 33 chr1 272379230 272379474 -9814190 + AluJo SINE Alu 63 298 -14 2166 127 0 0 chr1 272380021 272380321 -9813343 - AluSg SINE Alu -10 300 1 2256 123 0 0 chr1 272380327 272380635 -9813029 - AluSx SINE Alu -2 310 3 706 137 98 0 chr1 272380740 272380842 -9812822 - FLAM_A SINE Alu -30 112 1 2111 109 0 0 chr1 272382233 272382508 -9811156 + AluSg SINE Alu 1 275 -35 22 0 0 0 chr1 272382520 272382542 -9811122 + GC_rich Low_complexity Low_complexity 1 22 0 2368 95 0 10 chr1 272383002 272383307 -9810357 - AluSp SINE Alu -11 302 1 261 333 39 31 chr1 272383795 272383924 -9809740 - MIR3 SINE MIR -67 141 12 304 331 89 0 chr1 272384034 272384158 -9809506 - L2 LINE L2 0 3272 3138 418 250 350 15 chr1 272384813 272385073 -9808591 + L2 LINE L2 1344 1690 -1624 370 292 217 11 chr1 272385108 272385264 -9808400 + L2 LINE L2 2960 3083 -230 321 26 0 0 chr1 272385264 272385302 -9808362 + (TG)n Simple_repeat Simple_repeat 1 38 0 370 292 217 11 chr1 272385302 272385426 -9808238 + L2 LINE L2 3083 3298 -15 2775 290 111 16 chr1 272385427 272386813 -9806851 + L2 LINE L2 1712 3238 -75 27 0 0 0 chr1 272387091 272387118 -9806546 + AT_rich Low_complexity Low_complexity 1 27 0 2289 109 3 0 chr1 272387118 272387429 -9806235 + AluSx SINE Alu 1 312 0 203 306 48 97 chr1 272387471 272387626 -9806038 - MIR SINE MIR -71 137 9 315 0 0 0 chr1 272390074 272390109 -9803555 + (TG)n Simple_repeat Simple_repeat 1 35 0 2501 119 30 25 chr1 272390244 272390606 -9803058 + THE1B LTR MaLR 1 364 0 350 285 28 42 chr1 272390644 272390788 -9802876 - MER97b DNA MER1_type? -911 142 1 356 278 81 64 chr1 272391392 272391565 -9802099 + MIR SINE MIR 1 176 -86 224 374 12 0 chr1 272391577 272391660 -9802004 - L2 LINE L2 -23 3249 3166 371 345 142 31 chr1 272391782 272392117 -9801547 - L2 LINE L2 0 3313 2912 2419 95 0 13 chr1 272392117 272392434 -9801230 + AluSq SINE Alu 1 313 0 371 345 142 31 chr1 272392434 272392556 -9801108 - L2 LINE L2 -401 2912 2805 2007 115 6 56 chr1 272393461 272393761 -9799903 + AluSx SINE Alu 3 277 -35 22 0 0 0 chr1 272393761 272393783 -9799881 + AT_rich Low_complexity Low_complexity 1 22 0 206 286 143 0 chr1 272393978 272394062 -9799602 - MIR3 SINE MIR -3 205 110 3078 208 66 27 chr1 272394152 272394790 -9798874 + Tigger6a DNA MER2_type 171 854 -743 852 139 0 0 chr1 272394790 272394919 -9798745 + FLAM_C SINE Alu 5 133 0 3078 208 66 27 chr1 272394919 272395159 -9798505 + Tigger6a DNA MER2_type 854 1083 0 181 269 45 0 chr1 272395331 272395398 -9798266 + MIR SINE MIR 181 250 -12 733 257 238 11 chr1 272395398 272395764 -9797900 + L2 LINE L2 2529 2977 -337 846 112 0 0 chr1 272395853 272395969 -9797695 + FLAM_C SINE Alu 5 120 -23 492 270 72 59 chr1 272395993 272396300 -9797364 + L2 LINE L2 3003 3313 0 2251 116 0 3 chr1 272396481 272396792 -9796872 - AluSq SINE Alu -3 310 1 357 333 9 9 chr1 272397552 272397666 -9795998 - L2 LINE L2 -12 3260 3147 665 253 71 50 chr1 272397973 272398254 -9795410 - L2 LINE L2 0 3313 3027 288 111 0 0 chr1 272398308 272398353 -9795311 + (CA)n Simple_repeat Simple_repeat 2 46 0 351 260 31 42 chr1 272398817 272398913 -9794751 - L2 LINE L2 0 3272 3178 22 0 0 0 chr1 272398913 272398935 -9794729 + AT_rich Low_complexity Low_complexity 1 22 0 2204 88 24 20 chr1 272398935 272399230 -9794434 - AluSq SINE Alu -17 296 1 302 296 126 73 chr1 272399466 272399550 -9794114 - L2 LINE L2 -453 2861 2783 2217 114 3 0 chr1 272399550 272399857 -9793807 - AluSx SINE Alu -4 308 1 302 296 126 73 chr1 272399857 272400113 -9793551 - L2 LINE L2 -531 2783 2503 258 176 0 0 chr1 272400566 272400617 -9793047 + (TG)n Simple_repeat Simple_repeat 2 52 0 1915 167 0 3 chr1 272401472 272401784 -9791880 + AluSx SINE Alu 1 311 -1 233 203 85 0 chr1 272401882 272401941 -9791723 + MER5A DNA MER1_type 49 112 -77 247 242 154 11 chr1 272402137 272402228 -9791436 + MIR SINE MIR 96 199 -63 1994 85 0 0 chr1 272402891 272403137 -9790527 + AluSc SINE Alu 1 246 -63 200 238 0 0 chr1 272403256 272403298 -9790366 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2521 76 0 0 chr1 272403480 272403784 -9789880 - AluY SINE Alu -7 304 1 30 27 0 0 chr1 272404837 272404874 -9788790 + AT_rich Low_complexity Low_complexity 1 37 0 204 328 8 74 chr1 272405125 272405247 -9788417 - L2 LINE L2 -207 3065 2952 24 32 0 0 chr1 272405670 272405701 -9787963 + AT_rich Low_complexity Low_complexity 1 31 0 331 331 8 8 chr1 272405965 272406086 -9787578 + L2 LINE L2 2364 2484 -830 736 234 52 12 chr1 272406848 272407096 -9786568 - L1M4 LINE L1 -1737 4907 4650 2222 245 103 34 chr1 272407148 272408970 -9784694 - L1M4 LINE L1 -3766 2878 880 25 31 0 0 chr1 272408975 272409007 -9784657 + AT_rich Low_complexity Low_complexity 1 32 0 500 273 61 10 chr1 272409449 272409647 -9784017 - L1M4 LINE L1 -6318 224 17 288 326 109 0 chr1 272410518 272410656 -9783008 + MIR SINE MIR 69 221 -41 1450 224 124 31 chr1 272410936 272411419 -9782245 - LTR26 LTR ERV1 0 603 43 24 0 0 0 chr1 272411446 272411470 -9782194 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr1 272412244 272412271 -9781393 + (TG)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr1 272412274 272412298 -9781366 + AT_rich Low_complexity Low_complexity 1 24 0 2303 86 20 0 chr1 272414835 272415138 -9778526 + AluY SINE Alu 1 309 -2 523 277 105 13 chr1 272417140 272417378 -9776286 - MIR SINE MIR -1 261 2 405 202 165 9 chr1 272417500 272417609 -9776055 - MER63 DNA MER1_type -83 753 2 298 308 11 25 chr1 272417777 272417886 -9775778 - MIR SINE MIR -95 113 8 359 275 92 8 chr1 272418860 272418991 -9774673 - L2 LINE L2 -51 3262 3121 2096 139 10 0 chr1 272419925 272420227 -9773437 + AluSx SINE Alu 3 307 -5 205 248 44 0 chr1 272420608 272420721 -9772943 + (TA)n Simple_repeat Simple_repeat 1 118 0 3038 132 57 2 chr1 272421048 272421525 -9772139 - MER1A DNA MER1_type -26 503 1 209 167 56 14 chr1 272421907 272421979 -9771685 + (TA)n Simple_repeat Simple_repeat 1 75 0 * 305 187 39 50 chr1 272421952 272422134 -9771530 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 * 380 172 52 19 chr1 272422002 272422320 -9771344 + (TA)n Simple_repeat Simple_repeat 1 328 0 553 110 0 0 chr1 272422336 272422409 -9771255 + Tigger3(Golem) DNA MER2_type 36 108 -2921 * 4082 130 53 12 chr1 272422400 272423123 -9770541 + Tigger3(Golem) DNA MER2_type 2278 3029 0 353 75 19 0 chr1 272423149 272423202 -9770462 + (CA)n Simple_repeat Simple_repeat 1 54 0 40 49 0 0 chr1 272423223 272423284 -9770380 + AT_rich Low_complexity Low_complexity 1 61 0 404 277 100 72 chr1 272423423 272424173 -9769491 + L1M4 LINE L1 2248 3028 -3118 2095 136 0 0 chr1 272424173 272424474 -9769190 - AluSx SINE Alu -11 301 1 404 277 100 72 chr1 272424474 272424600 -9769064 + L1M4 LINE L1 3028 3149 -2997 360 297 127 49 chr1 272424950 272425563 -9768101 + L1M4 LINE L1 3589 4249 -1897 275 97 48 48 chr1 272425644 272425706 -9767958 + AluJo SINE Alu 87 148 -154 1260 154 5 10 chr1 272425717 272425925 -9767739 + AluJo SINE Alu 105 311 -1 1595 183 0 61 chr1 272426134 272426462 -9767202 - AluJb SINE Alu -1 311 4 27 49 0 0 chr1 272427457 272427498 -9766166 + AT_rich Low_complexity Low_complexity 1 41 0 402 132 0 0 chr1 272427501 272427554 -9766110 + AluJ/FRAM SINE Alu 232 284 -18 2419 92 0 0 chr1 272428856 272429159 -9764505 - AluSx SINE Alu -9 303 1 1098 211 54 19 chr1 272430271 272430532 -9763132 - MER58B DNA MER1_type -15 326 57 248 303 25 34 chr1 272431151 272431270 -9762394 + L2 LINE L2 2932 3049 -223 277 313 5 11 chr1 272431314 272431431 -9762233 + CT-rich Low_complexity Low_complexity 1 116 0 1877 127 14 0 chr1 272431881 272432173 -9761491 - L1PB1 LINE L1 0 6151 5856 2196 92 10 0 chr1 272432175 272432470 -9761194 + AluSq SINE Alu 1 298 -15 497 269 117 18 chr1 272432589 272432760 -9760904 - MIR SINE MIR -73 189 2 233 349 0 0 chr1 272432800 272432883 -9760781 - MER63 DNA MER1_type -1 1059 977 * 530 157 167 0 chr1 272432881 272432989 -9760675 - MER63 DNA MER1_type -309 753 2 180 77 0 0 chr1 272433410 272433436 -9760228 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 838 185 0 25 chr1 272433977 272434139 -9759525 - FRAM SINE Alu -6 170 13 25 0 0 0 chr1 272434139 272434164 -9759500 + AT_rich Low_complexity Low_complexity 1 25 0 2151 107 0 10 chr1 272434164 272434463 -9759201 + AluSc SINE Alu 1 296 -13 444 220 17 4 chr1 272434463 272434577 -9759087 - L1PB4 LINE L1 -12 6291 6046 231 325 81 25 chr1 272434940 272435063 -9758601 + MIR SINE MIR 34 162 -92 2177 115 0 0 chr1 272435187 272435492 -9758172 - AluSx SINE Alu -7 305 1 2290 74 0 35 chr1 272436306 272436617 -9757047 - AluY SINE Alu -11 300 1 23 54 0 0 chr1 272437224 272437261 -9756403 + AT_rich Low_complexity Low_complexity 1 37 0 692 202 0 16 chr1 272437662 272437786 -9755878 - FLAM_A SINE Alu -11 122 1 28 0 0 0 chr1 272439234 272439262 -9754402 + AT_rich Low_complexity Low_complexity 1 28 0 272 221 88 69 chr1 272439629 272439733 -9753931 + MIR SINE MIR 5 110 -98 22 0 0 0 chr1 272440257 272440279 -9753385 + AT_rich Low_complexity Low_complexity 1 22 0 2132 109 0 3 chr1 272441375 272441695 -9751969 + AluSx SINE Alu 1 319 0 2239 106 0 3 chr1 272441770 272442073 -9751591 + AluSx SINE Alu 1 302 -10 623 218 212 10 chr1 272442271 272442464 -9751200 + MIR SINE MIR 10 241 -21 383 156 0 26 chr1 272442511 272442588 -9751076 + L1ME LINE L1 26 100 -5970 1094 209 64 4 chr1 272442631 272442866 -9750798 - MLT1D LTR MaLR -5 500 252 253 254 0 0 chr1 272442878 272442945 -9750719 - MLT1D LTR MaLR -435 70 4 22 0 0 0 chr1 272444220 272444242 -9749422 + AT_rich Low_complexity Low_complexity 1 22 0 459 303 165 21 chr1 272444307 272444640 -9749024 - MLT1L LTR MaLR -89 526 146 226 308 128 8 chr1 272444956 272445073 -9748591 - L2 LINE L2 -5 3267 3137 409 175 0 0 chr1 272446022 272446085 -9747579 - AluS SINE Alu -8 294 232 180 77 0 0 chr1 272446093 272446119 -9747545 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 512 267 42 42 chr1 272446153 272446344 -9747320 + L2 LINE L2 3118 3308 -5 524 250 0 8 chr1 272446548 272446680 -9746984 - MER94 DNA DNA -3 131 1 1476 174 27 41 chr1 272446830 272447124 -9746540 - AluJo SINE Alu -18 294 5 1763 143 7 55 chr1 272447601 272447909 -9745755 + AluJb SINE Alu 1 293 -19 2219 107 0 7 chr1 272448490 272448798 -9744866 - AluSq SINE Alu -7 306 1 836 167 33 62 chr1 272449417 272449476 -9744188 - L1M4 LINE L1 -1352 4794 4735 2172 110 0 13 chr1 272449476 272449784 -9743880 - AluSc SINE Alu -5 304 1 836 167 33 62 chr1 272449784 272449934 -9743730 - L1M4 LINE L1 -1411 4735 4591 464 175 87 0 chr1 272450058 272450161 -9743503 + AluJb SINE Alu 201 312 0 1853 166 3 10 chr1 272450754 272451068 -9742596 + AluJb SINE Alu 1 312 0 1601 169 55 7 chr1 272451729 272452019 -9741645 + AluJo SINE Alu 1 304 -8 476 176 148 9 chr1 272452840 272452948 -9740716 - FLAM_A SINE Alu -9 133 11 241 235 12 47 chr1 272453408 272453493 -9740171 + L1MCc LINE L1 966 1047 -4975 1138 274 114 47 chr1 272453501 272454559 -9739105 + L1MCc LINE L1 1298 2283 -4257 524 182 8 30 chr1 272454559 272454691 -9738973 + L1MB8 LINE L1 6047 6175 -3 1138 274 114 47 chr1 272454691 272454978 -9738686 + L1MCc LINE L1 2283 2549 -3991 1985 128 21 7 chr1 272454978 272455266 -9738398 + AluSx SINE Alu 1 292 -20 411 21 0 0 chr1 272455266 272455314 -9738350 + (TA)n Simple_repeat Simple_repeat 2 49 0 1138 274 114 47 chr1 272455314 272456680 -9736984 + L1MCc LINE L1 2548 4202 -2338 23 78 0 0 chr1 272456712 272456763 -9736901 + AT_rich Low_complexity Low_complexity 1 51 0 309 174 30 36 chr1 272456969 272457064 -9736600 + (TA)n Simple_repeat Simple_repeat 1 96 -70 240 100 0 0 chr1 272457064 272457104 -9736560 + (CA)n Simple_repeat Simple_repeat 2 41 0 309 174 30 36 chr1 272457104 272457175 -9736489 + (TA)n Simple_repeat Simple_repeat 96 166 0 204 139 0 23 chr1 272457175 272457218 -9736446 + (CA)n Simple_repeat Simple_repeat 1 42 0 8437 156 50 2 chr1 272457260 272460748 -9732916 - L1PBa LINE L1 -1734 5128 1332 3292 227 118 14 chr1 272460765 272461814 -9731850 - L1PBa LINE L1 -5700 1163 6 2728 88 11 8 chr1 272461832 272462206 -9731458 - THE1C LTR MaLR 0 375 1 1814 254 67 20 chr1 272462438 272463024 -9730640 + L1ME1 LINE L1 5549 6161 -5 4721 0 43 0 chr1 272463249 272463714 -9729950 + L1MC1 LINE L1 5258 5693 -640 4721 148 40 10 chr1 272463714 272464592 -9729072 + L1MC1 LINE L1 5428 6331 -2 4721 0 43 0 chr1 272464592 272464754 -9728910 + L1MC1 LINE L1 5693 6331 -2 3164 208 52 68 chr1 272465474 272465697 -9727967 - MER21B LTR ERV1 -11 852 627 2122 127 0 7 chr1 272465697 272465997 -9727667 - AluSx SINE Alu -14 298 1 3164 208 52 68 chr1 272465997 272466621 -9727043 - MER21B LTR ERV1 -236 627 19 247 261 87 22 chr1 272466803 272466895 -9726769 - MER117 DNA MER1_type -96 101 4 269 169 0 51 chr1 272466903 272466962 -9726702 - MLT1I LTR MaLR -8 401 346 1660 194 0 31 chr1 272467422 272467742 -9725922 + AluJo SINE Alu 1 310 -2 759 314 213 22 chr1 272468295 272469316 -9724348 - L2 LINE L2 0 3313 2076 1594 183 3 36 chr1 272470248 272470549 -9723115 - AluJb SINE Alu -21 291 1 35 59 0 24 chr1 272471140 272471208 -9722456 + AT_rich Low_complexity Low_complexity 1 68 -15 1627 194 21 3 chr1 272471208 272471496 -9722168 + AluJo SINE Alu 1 293 -19 35 59 0 24 chr1 272471496 272471512 -9722152 + AT_rich Low_complexity Low_complexity 68 83 0 189 363 44 37 chr1 272472512 272472647 -9721017 + MIR3 SINE MIR 15 150 -58 224 226 0 19 chr1 272473433 272473486 -9720178 + L2 LINE L2 3217 3268 -4 599 260 95 48 chr1 272475209 272475580 -9718084 - L1MC/D LINE L1 -385 5736 5377 2471 88 0 0 chr1 272475783 272476090 -9717574 - AluSx SINE Alu -5 307 1 24 0 0 0 chr1 272476098 272476122 -9717542 + AT_rich Low_complexity Low_complexity 1 24 0 732 272 157 23 chr1 272477329 272477928 -9715736 + L1ME3A LINE L1 5256 5948 -222 2124 129 0 0 chr1 272477928 272478222 -9715442 - AluJb SINE Alu -18 294 1 249 377 63 17 chr1 272479219 272479394 -9714270 - MIR3 SINE MIR -23 185 3 360 295 0 45 chr1 272479713 272479825 -9713839 - MIR SINE MIR -123 139 33 520 138 0 12 chr1 272480378 272480458 -9713206 + MER41C LTR ERV1 1 79 -475 350 85 0 0 chr1 272480450 272480497 -9713167 + MER41C LTR ERV1 25 71 -483 * 2970 118 79 6 chr1 272480498 272480964 -9712700 + MER41C LTR ERV1 25 524 -30 7232 114 130 121 chr1 272480964 272482658 -9711006 - pTR5 LTR ERV1 0 2438 56 367 280 0 36 chr1 272482758 272482792 -9710872 + Charlie7 DNA MER1_type 40 74 -2538 2986 96 45 5 chr1 272482792 272483239 -9710425 + MER4C LTR ERV1 1 465 0 367 280 0 36 chr1 272483239 272483372 -9710292 + Charlie7 DNA MER1_type 74 201 -2411 700 271 187 12 chr1 272483600 272483932 -9709732 + Charlie7 DNA MER1_type 354 743 -1869 1664 168 11 7 chr1 272483973 272484259 -9709405 - AluJb SINE Alu -15 297 11 1014 251 136 55 chr1 272484275 272484818 -9708846 + Charlie7 DNA MER1_type 830 1416 -1196 1405 252 116 22 chr1 272484991 272485543 -9708121 + Charlie7 DNA MER1_type 1740 2343 -269 27 0 0 0 chr1 272485599 272485626 -9708038 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr1 272485655 272485676 -9707988 + AT_rich Low_complexity Low_complexity 1 21 0 1657 199 67 31 chr1 272485720 272486111 -9707553 + MLT1D LTR MaLR 1 405 -100 431 130 0 14 chr1 272586291 272586360 -9607304 + MLT1A1 LTR MaLR 1 68 -297 792 182 117 52 chr1 272586360 272586742 -9606922 - LTR7 LTR ERV1 0 450 1 1474 171 63 7 chr1 272586742 272587028 -9606636 + MLT1A1 LTR MaLR 64 365 0 1650 160 7 56 chr1 272587520 272587826 -9605838 - AluJo SINE Alu -21 291 1 343 300 147 34 chr1 272588253 272588546 -9605118 + L1ME4a LINE L1 5791 6116 -5 310 327 176 26 chr1 272588996 272589495 -9604169 + L2 LINE L2 2287 2860 -454 345 188 176 0 chr1 272589536 272589621 -9604043 - L2 LINE L2 -17 3296 3197 474 235 70 75 chr1 272591763 272591950 -9601714 + MIR SINE MIR 77 262 0 6096 87 9 20 chr1 272592311 272593218 -9600446 + L1MA1 LINE L1 5406 6302 0 243 0 0 0 chr1 272593425 272593452 -9600212 + (T)n Simple_repeat Simple_repeat 1 27 0 459 92 0 0 chr1 272594122 272594187 -9599477 + (TA)n Simple_repeat Simple_repeat 2 66 0 204 40 0 0 chr1 272594881 272594906 -9598758 + (T)n Simple_repeat Simple_repeat 1 25 0 1607 143 0 0 chr1 272594911 272595148 -9598516 - AluSx SINE Alu -75 237 1 282 314 42 42 chr1 272595205 272595323 -9598341 - L2 LINE L2 0 3272 3155 * 439 301 72 42 chr1 272595309 272595502 -9598162 + MIR SINE MIR 25 223 -39 735 260 28 56 chr1 272596448 272596698 -9596966 + MIR SINE MIR 20 262 0 571 270 23 40 chr1 272596879 272597053 -9596611 - MIR SINE MIR -82 180 10 2302 98 0 0 chr1 272597874 272598171 -9595493 - AluSc SINE Alu -12 297 1 2418 87 3 3 chr1 272598740 272599050 -9594614 - AluSx SINE Alu -2 310 1 753 158 14 0 chr1 272599511 272599657 -9594007 + L1MA7 LINE L1 6143 6290 -1 677 275 128 0 chr1 272600037 272600248 -9593416 + MIR SINE MIR 14 251 -11 252 184 0 0 chr1 272600945 272600994 -9592670 + (TATG)n Simple_repeat Simple_repeat 1 49 0 339 25 0 0 chr1 272601193 272601233 -9592431 + (TG)n Simple_repeat Simple_repeat 2 41 0 335 227 83 45 chr1 272602126 272602252 -9591412 + MIR SINE MIR 18 138 -70 1779 212 79 37 chr1 272603148 272603742 -9589922 - MER20B DNA MER1_type 0 783 165 27 81 0 0 chr1 272604981 272605043 -9588621 + AT_rich Low_complexity Low_complexity 1 62 0 1259 105 38 0 chr1 272605679 272605888 -9587776 + L1MA5 LINE L1 6084 6300 0 226 327 44 9 chr1 272606184 272606297 -9587367 + MIR SINE MIR 28 144 -118 345 47 0 0 chr1 272606809 272606852 -9586812 + (CA)n Simple_repeat Simple_repeat 1 43 0 1184 175 13 8 chr1 272607430 272607664 -9586000 + MER46A DNA MER2_type 2 236 0 198 71 0 0 chr1 272607848 272607876 -9585788 + (TCCA)n Simple_repeat Simple_repeat 4 31 0 216 0 0 0 chr1 272607991 272608015 -9585649 + (TCTCCC)n Simple_repeat Simple_repeat 1 24 0 7555 44 11 10 chr1 272608016 272609479 -9584185 + SVA Other Other 2 1386 0 229 349 18 28 chr1 272610827 272610936 -9582728 + MIR3 SINE MIR 14 121 -87 1251 116 0 0 chr1 272611429 272611593 -9582071 - AluSg/x SINE Alu -14 296 133 972 201 68 26 chr1 272612716 272612930 -9580734 + MER57A LTR ERV1 160 386 -17 2348 98 3 0 chr1 272612930 272613237 -9580427 - AluSg SINE Alu -2 308 1 972 201 68 26 chr1 272613237 272613256 -9580408 + MER57A LTR ERV1 386 403 0 232 263 81 20 chr1 272613261 272613360 -9580304 + MIR SINE MIR 151 255 -7 1676 168 40 34 chr1 272613640 272613967 -9579697 + THE1B LTR MaLR 11 339 -25 572 254 8 8 chr1 272613967 272614097 -9579567 + L2 LINE L2 3184 3313 0 493 269 36 58 chr1 272614649 272614872 -9578792 - MIR SINE MIR -30 232 15 296 333 50 0 chr1 272615424 272615523 -9578141 - MIR SINE MIR -140 122 19 22 0 0 0 chr1 272616189 272616211 -9577453 + AT_rich Low_complexity Low_complexity 1 22 0 2529 43 0 0 chr1 272616854 272617159 -9576505 - L1PA7 LINE L1 -7 6147 5843 28 0 0 0 chr1 272617337 272617365 -9576299 + AT_rich Low_complexity Low_complexity 1 28 0 310 260 78 52 chr1 272617974 272618128 -9575536 + HAL1 LINE L1 1035 1192 -1315 21 0 0 0 chr1 272618196 272618217 -9575447 + AT_rich Low_complexity Low_complexity 1 21 0 373 141 70 0 chr1 272618542 272618613 -9575051 - L1PA16 LINE L1 0 6166 6091 1674 162 20 26 chr1 272619656 272619959 -9573705 + AluJo SINE Alu 1 301 -11 22 0 0 0 chr1 272620172 272620194 -9573470 + AT_rich Low_complexity Low_complexity 1 22 0 38 51 0 0 chr1 272620654 272620713 -9572951 + AT_rich Low_complexity Low_complexity 1 59 0 209 132 26 0 chr1 272622193 272622231 -9571433 + (TTA)n Simple_repeat Simple_repeat 3 41 0 22 80 0 0 chr1 272623077 272623127 -9570537 + AT_rich Low_complexity Low_complexity 1 50 0 1995 157 57 27 chr1 272624252 272624792 -9568872 + MLT2A2 LTR ERVL 2 554 0 2361 61 10 0 chr1 272626307 272626600 -9567064 - AluY SINE Alu -15 296 1 218 295 205 8 chr1 272627399 272627521 -9566143 - MIR SINE MIR -19 243 98 211 304 167 29 chr1 272629560 272629662 -9564002 + L2 LINE L2 3157 3272 0 418 337 57 16 chr1 272630973 272631166 -9562498 - MIR SINE MIR -34 228 28 1138 128 0 0 chr1 272632006 272632162 -9561502 - AluSg/x SINE Alu -21 291 136 2460 68 0 3 chr1 272632179 272632487 -9561177 + AluY SINE Alu 1 307 -4 191 269 75 30 chr1 272633144 272633211 -9560453 + L3 LINE CR1 1378 1447 -130 2099 119 3 10 chr1 272633303 272633606 -9560058 - AluSq SINE Alu -12 301 1 1902 164 0 0 chr1 272633824 272634129 -9559535 + AluY SINE Alu 1 305 -6 1834 119 18 3 chr1 272634444 272634730 -9558934 + AluY SINE Alu 3 292 -19 195 232 18 18 chr1 272635700 272635756 -9557908 + L2 LINE L2 3258 3313 0 236 203 81 0 chr1 272636403 272636477 -9557187 - MER112 DNA MER1_type -96 164 85 2150 134 0 6 chr1 272636508 272636882 -9556782 + AluSx SINE Alu 1 372 0 233 259 19 0 chr1 272637852 272637906 -9555758 + MIR SINE MIR 198 252 -10 21 0 0 0 chr1 272639651 272639672 -9553992 + AT_rich Low_complexity Low_complexity 1 21 0 2431 242 29 30 chr1 272641178 272641868 -9551796 - L1ME1 LINE L1 -33 6133 5445 277 277 46 54 chr1 272641983 272642113 -9551551 - L2 LINE L2 -1 3312 3184 41 66 0 0 chr1 272642148 272642224 -9551440 + AT_rich Low_complexity Low_complexity 1 76 0 982 288 45 27 chr1 272642277 272642792 -9550872 - L2 LINE L2 -193 3120 2600 379 110 27 14 chr1 272643204 272643277 -9550387 + MADE1 DNA Mariner 5 78 -2 5809 124 30 10 chr1 272643610 272644580 -9549084 - L1MA8 LINE L1 -5 6286 5297 196 335 97 26 chr1 272645059 272645214 -9548450 + MIR SINE MIR 67 232 -30 21 71 0 0 chr1 272645549 272645591 -9548073 + AT_rich Low_complexity Low_complexity 1 42 0 2234 104 0 7 chr1 272645651 272645960 -9547704 + AluY SINE Alu 1 307 -4 24 32 0 0 chr1 272646119 272646150 -9547514 + AT_rich Low_complexity Low_complexity 1 31 0 2484 44 3 19 chr1 272646414 272646730 -9546934 + AluY SINE Alu 1 311 0 362 248 18 9 chr1 272648658 272648771 -9544893 - L1M4 LINE L1 -2916 3230 3117 23 33 0 0 chr1 272648944 272648974 -9544690 + AT_rich Low_complexity Low_complexity 1 30 0 368 219 0 0 chr1 272648974 272649056 -9544608 - L1PB4 LINE L1 -9 6147 6066 265 213 49 0 chr1 272649066 272649127 -9544537 - L1PB4 LINE L1 -70 6086 6023 3328 18 0 0 chr1 272649745 272650128 -9543536 + L1PA3 LINE L1 5773 6155 0 338 237 0 0 chr1 272651049 272651125 -9542539 + HsTC2 DNA Tc2 225 300 -1598 1742 158 72 0 chr1 272651475 272651766 -9541898 + AluSx SINE Alu 1 312 0 180 219 0 0 chr1 272653347 272653388 -9540276 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 1423 175 39 67 chr1 272653824 272654215 -9539449 - L1MA10 LINE L1 -7 6327 5952 2314 109 0 10 chr1 272654656 272655022 -9538642 + AluSg SINE Alu 1 363 0 1758 152 76 23 chr1 272655400 272655481 -9538183 - MER46B DNA MER2_type -2495 236 161 1017 224 88 51 chr1 272655481 272655812 -9537852 + MER2 DNA MER2_type 1 343 -1 1758 152 76 23 chr1 272655812 272656072 -9537592 - MER46B DNA MER2_type -2570 161 2 1661 192 9 0 chr1 272656262 272656585 -9537079 - L1MD1 LINE L1 -16 6226 5901 771 142 0 7 chr1 272656618 272656759 -9536905 - L1MA7 LINE L1 -7 6284 6145 6069 221 118 17 chr1 272656813 272660058 -9533606 - L1MDa LINE L1 -2848 3692 14 351 324 28 21 chr1 272660619 272660764 -9532900 + LTR67 LTR ERVL 408 553 -4 302 215 236 103 chr1 272661162 272661310 -9532354 + MLT1L LTR MaLR 1 128 -487 2373 116 28 3 chr1 272661310 272661665 -9531999 + THE1B LTR MaLR 1 364 0 302 215 236 103 chr1 272661665 272661758 -9531906 + MLT1L LTR MaLR 128 274 -341 345 273 64 0 chr1 272661835 272661945 -9531719 + MLT1L LTR MaLR 386 502 -113 234 288 22 125 chr1 272662344 272662528 -9531136 + L2 LINE L2 2886 3050 -222 1694 172 7 17 chr1 272662888 272663190 -9530474 + AluJo SINE Alu 1 299 -13 1377 144 35 4 chr1 272664462 272664691 -9528973 - MER46A DNA MER2_type 0 236 1 196 234 43 0 chr1 272664782 272664829 -9528835 - L3 LINE CR1 -1412 165 117 402 200 22 0 chr1 272664831 272664921 -9528743 + AluSg/x SINE Alu 216 307 -2 489 290 57 0 chr1 272664965 272665089 -9528575 - L2 LINE L2 0 3272 3142 2637 186 38 35 chr1 272665927 272666533 -9527131 - L1MB8 LINE L1 -6 6172 5565 23 33 0 0 chr1 272666538 272666568 -9527096 + AT_rich Low_complexity Low_complexity 1 30 0 205 229 62 115 chr1 272666953 272667049 -9526615 + MIR3 SINE MIR 111 201 -7 355 298 95 83 chr1 272668443 272668714 -9524950 - L2 LINE L2 -42 3271 2994 1617 132 66 45 chr1 272668714 272669002 -9524662 + AluSx SINE Alu 1 294 -18 355 298 95 83 chr1 272669002 272669056 -9524608 - L2 LINE L2 -319 2994 2942 434 200 24 0 chr1 272669076 272669161 -9524503 + AluSg/x SINE Alu 206 292 -18 200 108 0 27 chr1 272669182 272669219 -9524445 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 416 188 24 12 chr1 272669232 272669317 -9524347 + AluSg/x SINE Alu 205 290 -19 258 105 0 0 chr1 272669329 272669367 -9524297 + (GGGA)n Simple_repeat Simple_repeat 4 41 0 231 65 65 0 chr1 272669370 272669416 -9524248 + GA-rich Low_complexity Low_complexity 1 49 0 216 0 0 0 chr1 272669558 272669582 -9524082 + (A)n Simple_repeat Simple_repeat 1 24 0 1614 155 21 21 chr1 272669673 272669957 -9523707 - AluJb SINE Alu -28 284 1 218 372 102 19 chr1 272669962 272670333 -9523331 + L2 LINE L2 1861 2262 -1052 227 217 58 0 chr1 272670345 272670414 -9523250 + (TATATG)n Simple_repeat Simple_repeat 2 74 0 330 248 196 0 chr1 272670422 272670555 -9523109 - MIR SINE MIR -27 235 77 26886 41 5 3 chr1 272670792 272674919 -9518745 - L1PA5 LINE L1 -2 6152 2016 185 369 121 29 chr1 272675413 272675719 -9517945 + L2 LINE L2 2642 2975 -339 7092 141 23 21 chr1 272676572 272678467 -9515197 - L1MA6 LINE L1 -5 6997 5106 2189 77 49 7 chr1 272678467 272678754 -9514910 - AluSx SINE Alu -13 299 1 7092 141 23 21 chr1 272678754 272679118 -9514546 - L1MA6 LINE L1 -1896 5106 4744 5783 227 64 12 chr1 272679117 272680713 -9512951 - L1MA6 LINE L1 -2613 4235 2718 * 2096 119 28 0 chr1 272680713 272680998 -9512666 + AluSc SINE Alu 1 293 -16 5783 227 64 12 chr1 272680998 272682444 -9511220 - L1MA6 LINE L1 -4130 2718 1349 227 235 20 0 chr1 272682458 272682509 -9511155 - L1MA6 LINE L1 -5416 1433 1382 186 118 0 0 chr1 272683138 272683172 -9510492 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr1 272683339 272683364 -9510300 + (A)n Simple_repeat Simple_repeat 1 25 0 460 251 7 25 chr1 272684074 272684225 -9509439 - MIR SINE MIR -67 141 1 214 270 14 27 chr1 272685061 272685135 -9508529 + (TA)n Simple_repeat Simple_repeat 1 73 0 2233 120 0 0 chr1 272685212 272685512 -9508152 - AluSx SINE Alu -12 300 1 2084 139 0 0 chr1 272685606 272685901 -9507763 - AluSx SINE Alu -17 295 1 1039 187 20 25 chr1 272686606 272686809 -9506855 + MER20 DNA MER1_type 18 219 0 558 108 0 0 chr1 272687012 272687095 -9506569 + (GGA)n Simple_repeat Simple_repeat 2 84 0 222 295 130 31 chr1 272688544 272688648 -9505016 + MIR SINE MIR 34 146 -62 2257 109 0 0 chr1 272689330 272689623 -9504041 - AluSx SINE Alu -19 293 1 22 80 0 0 chr1 272690764 272690814 -9502850 + AT_rich Low_complexity Low_complexity 1 50 0 191 304 0 0 chr1 272691023 272691069 -9502595 - L2 LINE L2 0 3313 3268 2115 124 17 0 chr1 272691159 272691458 -9502206 + AluSx SINE Alu 1 304 -8 464 313 109 16 chr1 272691596 272691788 -9501876 + MIR SINE MIR 13 222 -40 25 31 0 0 chr1 272692279 272692311 -9501353 + AT_rich Low_complexity Low_complexity 1 32 0 395 279 121 24 chr1 272692796 272692961 -9500703 - MIR SINE MIR -61 201 21 805 216 31 0 chr1 272692967 272693129 -9500535 - MER58B DNA MER1_type -2 339 173 696 164 39 0 chr1 272693138 272693266 -9500398 + AluJo SINE Alu 1 133 -169 233 267 0 0 chr1 272693282 272693327 -9500337 + MER66B LTR ERV1 298 342 -144 1128 155 5 26 chr1 272693333 272693527 -9500137 + AluJo SINE Alu 120 309 -3 569 280 0 7 chr1 272693614 272693764 -9499900 - L2 LINE L2 -5 3308 3160 294 265 69 20 chr1 272694680 272694782 -9498882 - MIR SINE MIR -108 154 48 5166 125 39 12 chr1 272694790 272695236 -9498428 + L1PA16 LINE L1 5196 5628 -538 243 0 0 0 chr1 272695236 272695263 -9498401 + (TA)n Simple_repeat Simple_repeat 2 28 0 5166 125 39 12 chr1 272695263 272695750 -9497914 + L1PA16 LINE L1 5628 6155 -11 2156 129 0 22 chr1 272695777 272696095 -9497569 + AluSq SINE Alu 1 311 -2 191 248 248 34 chr1 272696164 272696281 -9497383 - MIR3 SINE MIR -6 202 61 1651 173 44 24 chr1 272697170 272697511 -9496153 - MLT1B LTR MaLR 0 390 43 2240 109 0 3 chr1 272697729 272698033 -9495631 + AluSq SINE Alu 1 303 -10 2323 94 7 0 chr1 272698633 272698941 -9494723 + AluSq SINE Alu 3 312 -1 370 240 58 52 chr1 272699915 272700069 -9493595 + L2 LINE L2 1548 1702 -1612 2091 122 0 24 chr1 272700077 272700373 -9493291 + AluSx SINE Alu 4 292 -20 997 189 16 56 chr1 272700505 272700606 -9493058 - MLT1D LTR MaLR -131 374 270 195 42 0 0 chr1 272700606 272700630 -9493034 + (TC)n Simple_repeat Simple_repeat 1 24 0 474 33 0 0 chr1 272700632 272700692 -9492972 + (CA)n Simple_repeat Simple_repeat 2 61 0 997 189 16 56 chr1 272700692 272700891 -9492773 - MLT1D LTR MaLR -236 269 1 1115 288 58 7 chr1 272700902 272701389 -9492275 - L1MB2 LINE L1 -341 5830 5319 823 281 115 45 chr1 272701590 272702393 -9491271 - L1MB2 LINE L1 -1148 4998 4140 2066 213 106 80 chr1 272703190 272703814 -9489850 - MLT1E1 LTR MaLR -7 647 8 1831 92 4 12 chr1 272704348 272704597 -9489067 - AluY SINE Alu -10 301 55 1157 104 0 0 chr1 272704955 272705099 -9488565 + AluY SINE Alu 55 198 -113 234 91 0 0 chr1 272705358 272705391 -9488273 + (TG)n Simple_repeat Simple_repeat 2 34 0 1747 94 23 0 chr1 272706542 272706807 -9486857 + L1MA2 LINE L1 6034 6304 0 2453 93 0 0 chr1 272707002 272707315 -9486349 + AluSq SINE Alu 1 313 0 234 250 0 0 chr1 272707358 272707414 -9486250 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 1843 154 7 3 chr1 272707484 272707769 -9485895 - AluJo SINE Alu -26 286 1 740 242 9 28 chr1 272707827 272707977 -9485687 + MER3 DNA MER1_type 2 148 -61 2178 118 3 0 chr1 272707977 272708274 -9485390 + AluSq SINE Alu 1 298 -15 740 242 9 28 chr1 272708274 272708334 -9485330 + MER3 DNA MER1_type 148 208 -1 2184 107 0 7 chr1 272708380 272708678 -9484986 - AluSg SINE Alu -14 296 1 278 375 45 0 chr1 272708843 272708955 -9484709 + L2 LINE L2 3155 3271 -1 1717 153 23 43 chr1 272711008 272711308 -9482356 - AluJb SINE Alu -14 298 5 1442 185 85 7 chr1 272713075 272713511 -9480153 + AluJo SINE Alu 1 458 0 1857 151 4 0 chr1 272714025 272714303 -9479361 + AluSx SINE Alu 1 279 -33 186 43 0 0 chr1 272714307 272714330 -9479334 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2046 119 10 19 chr1 272715160 272715471 -9478193 - AluSp SINE Alu -5 308 1 5230 230 27 22 chr1 272717810 272719050 -9474614 + L1ME2 LINE L1 2 1247 -5295 1134 112 7 0 chr1 272719050 272719202 -9474462 + AluSq SINE Alu 1 153 -160 847 261 11 46 chr1 272719202 272719463 -9474201 - L1M4 LINE L1 -6230 312 61 1091 82 0 0 chr1 272719463 272719598 -9474066 + AluSq SINE Alu 163 297 -16 2117 238 53 5 chr1 272719603 272720224 -9473440 + L1ME2 LINE L1 1242 1892 -4754 264 317 97 62 chr1 272720224 272720647 -9473017 + L2 LINE L2 1322 1759 -1555 208 276 0 0 chr1 272720683 272720741 -9472923 + L2 LINE L2 2317 2374 -940 23 0 0 0 chr1 272721011 272721034 -9472630 + AT_rich Low_complexity Low_complexity 1 23 0 223 359 63 14 chr1 272721043 272721185 -9472479 + L2 LINE L2 2818 2966 -306 1755 221 146 24 chr1 272721216 272721683 -9471981 + MLT1F1 LTR MaLR 3 526 -41 272 376 86 32 chr1 272721755 272721941 -9471723 + L2 LINE L2 3029 3224 -48 1993 110 0 34 chr1 272721978 272722309 -9471355 + AluSg SINE Alu 1 321 0 5591 247 71 10 chr1 272723666 272725665 -9467999 + L1ME2 LINE L1 3705 5825 -819 1017 238 83 77 chr1 272725660 272726203 -9467461 + L1ME2 LINE L1 6115 6660 -2 * 23 86 0 0 chr1 272726204 272726262 -9467402 + AT_rich Low_complexity Low_complexity 1 58 0 446 280 135 10 chr1 272726627 272726827 -9466837 + MIR SINE MIR 38 262 0 2505 56 0 7 chr1 272727040 272727345 -9466319 - AluY SINE Alu -8 303 1 246 62 0 0 chr1 272728936 272728968 -9464696 + (A)n Simple_repeat Simple_repeat 1 32 0 224 30 30 0 chr1 272729027 272729060 -9464604 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1583 127 4 0 chr1 272729072 272729300 -9464364 - AluJo SINE Alu -83 229 1 440 265 99 40 chr1 272729450 272729673 -9463991 + MER46C DNA MER2_type 103 338 0 245 276 82 60 chr1 272731024 272731158 -9462506 + L2 LINE L2 3177 3313 0 2087 117 0 0 chr1 272731287 272731569 -9462095 + AluSx SINE Alu 1 282 -30 378 94 0 0 chr1 272731572 272731636 -9462028 + (TA)n Simple_repeat Simple_repeat 2 65 0 609 234 8 0 chr1 272731700 272731824 -9461840 + L2 LINE L2 3189 3313 0 1966 134 0 10 chr1 272731932 272732243 -9461421 + AluSx SINE Alu 1 312 0 36 62 0 31 chr1 272732593 272732690 -9460974 + AT_rich Low_complexity Low_complexity 1 94 0 735 176 0 0 chr1 272732704 272732835 -9460829 - FLAM_C SINE Alu -2 131 1 23 0 0 0 chr1 272732842 272732865 -9460799 + AT_rich Low_complexity Low_complexity 1 23 0 195 100 0 0 chr1 272734498 272734528 -9459136 + (TAAAA)n Simple_repeat Simple_repeat 4 33 0 410 278 81 61 chr1 272736201 272736259 -9457405 - L2 LINE L2 -14 3299 3244 1980 70 4 0 chr1 272736259 272736532 -9457132 + AluSp SINE Alu 40 313 0 410 278 81 61 chr1 272736532 272736567 -9457097 - L2 LINE L2 -69 3244 3211 3587 58 0 2 chr1 272736567 272737016 -9456648 + LTR7 LTR ERV1 1 448 -2 410 278 81 61 chr1 272737016 272737215 -9456449 - L2 LINE L2 -102 3211 2999 211 216 0 0 chr1 272737655 272737692 -9455972 + (CATA)n Simple_repeat Simple_repeat 3 39 0 2264 111 0 13 chr1 272737857 272738164 -9455500 - AluSq SINE Alu -10 303 1 269 53 0 26 chr1 272738673 272738711 -9454953 - L1PA10 LINE L1 -13 6155 6119 2141 89 26 0 chr1 272738737 272739041 -9454623 - L1PA10 LINE L1 -5 6163 5852 2234 104 3 7 chr1 272739792 272740099 -9453565 - AluSx SINE Alu -6 306 1 2361 92 0 16 chr1 272740162 272740478 -9453186 - AluSx SINE Alu -1 311 1 395 272 105 76 chr1 272740794 272740971 -9452693 - L1ME3A LINE L1 -230 5940 5770 2200 87 33 3 chr1 272740971 272741270 -9452394 + AluSx SINE Alu 1 308 -4 395 272 105 76 chr1 272741270 272741474 -9452190 - L1ME3A LINE L1 -400 5770 5548 493 218 75 11 chr1 272741496 272741684 -9451980 - L1ME3A LINE L1 -701 5461 5262 2255 29 0 43 chr1 272741690 272741849 -9451815 - AluY SINE Alu -20 291 148 2535 46 0 3 chr1 272741849 272742155 -9451509 - AluY SINE Alu -6 305 1 2255 29 0 43 chr1 272742155 272742273 -9451391 - AluY SINE Alu -163 148 26 782 259 136 34 chr1 272742431 272743021 -9450643 - L1ME3A LINE L1 -1889 4257 3608 339 25 0 0 chr1 272743069 272743109 -9450555 + (TG)n Simple_repeat Simple_repeat 2 41 0 1143 182 16 0 chr1 272743506 272743748 -9449916 + L1MA8 LINE L1 6043 6288 -3 407 266 94 48 chr1 272744105 272744627 -9449037 - L1ME3A LINE L1 -3491 2655 2110 24 32 0 0 chr1 272744630 272744661 -9449003 + AT_rich Low_complexity Low_complexity 1 31 0 309 340 63 0 chr1 272745100 272745259 -9448405 - L1ME LINE L1 -435 5727 5559 240 279 102 27 chr1 272745405 272745552 -9448112 + Charlie2b DNA MER1_type 506 663 -2119 241 100 40 0 chr1 272745570 272745620 -9448044 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 2003 256 135 44 chr1 272745663 272746938 -9446726 + Charlie2a DNA MER1_type 1472 2862 0 211 294 44 0 chr1 272747201 272747269 -9446395 - MIR SINE MIR -74 188 118 240 200 62 15 chr1 272747323 272747388 -9446276 + MIR SINE MIR 101 168 -94 23 54 0 0 chr1 272747399 272747436 -9446228 + AT_rich Low_complexity Low_complexity 1 37 0 2381 85 3 0 chr1 272747663 272747957 -9445707 - AluSx SINE Alu -17 295 1 2616 41 0 0 chr1 272748260 272748554 -9445110 - AluY SINE Alu -15 296 3 348 24 0 0 chr1 272748787 272748828 -9444836 + (TG)n Simple_repeat Simple_repeat 1 41 0 188 224 15 0 chr1 272749072 272749139 -9444525 + (TA)n Simple_repeat Simple_repeat 1 68 0 309 196 18 0 chr1 272749465 272749521 -9444143 - L2 LINE L2 0 3272 3216 2475 207 27 25 chr1 272750125 272750760 -9442904 - Tigger7 DNA MER2_type 0 2587 66 654 185 8 0 chr1 272751156 272751286 -9442378 + MLT2D LTR ERVL 1 131 -283 3015 173 37 7 chr1 272751286 272751939 -9441725 + L1PA16 LINE L1 4649 5352 -804 1831 189 3 6 chr1 272751939 272752252 -9441412 + AluJo SINE Alu 1 312 0 3015 173 37 7 chr1 272752252 272752584 -9441080 + L1PA16 LINE L1 5352 5673 -483 2088 127 10 0 chr1 272752596 272752888 -9440776 - AluSq SINE Alu -18 295 1 204 179 0 0 chr1 272753420 272753459 -9440205 + (CATA)n Simple_repeat Simple_repeat 1 39 0 2076 140 0 13 chr1 272753624 272753931 -9439733 - AluSq SINE Alu -10 303 1 1599 134 8 4 chr1 272753945 272754183 -9439481 + AluSg/x SINE Alu 66 304 -6 1880 210 42 9 chr1 272754183 272754617 -9439047 + L1PA16 LINE L1 5682 6129 -37 319 130 0 0 chr1 272754641 272754695 -9438969 + L1PA16 LINE L1 6097 6150 -16 529 206 16 24 chr1 272754718 272754844 -9438820 + MLT2D LTR ERVL 118 242 -172 282 125 0 0 chr1 272754866 272754914 -9438750 + (TA)n Simple_repeat Simple_repeat 1 48 0 287 133 0 0 chr1 272754926 272754971 -9438693 + MLT2D LTR ERVL 366 410 -4 3171 221 23 42 chr1 272755116 272755867 -9437797 - L1MB7 LINE L1 -77 6107 5376 2033 142 0 7 chr1 272755867 272756170 -9437494 - AluSx SINE Alu -11 301 1 3171 221 23 42 chr1 272756170 272756472 -9437192 - L1MB7 LINE L1 -808 5376 5070 25 0 0 0 chr1 272756495 272756520 -9437144 + AT_rich Low_complexity Low_complexity 1 25 0 190 330 136 86 chr1 272756945 272757196 -9436468 - L2 LINE L2 0 3272 3035 1443 87 48 44 chr1 272757196 272757425 -9436239 - MER30 DNA MER1_type 0 230 1 190 330 136 86 chr1 272757425 272757464 -9436200 - L2 LINE L2 -237 3035 2999 1436 44 22 0 chr1 272757464 272757646 -9436018 + L1PA4 LINE L1 5969 6154 -1 190 330 136 86 chr1 272757646 272757751 -9435913 - L2 LINE L2 -273 2999 2856 21 36 0 0 chr1 272757860 272757888 -9435776 + AT_rich Low_complexity Low_complexity 1 28 0 2152 109 0 45 chr1 272757888 272758200 -9435464 - AluSx SINE Alu -14 298 1 235 281 34 22 chr1 272758200 272758289 -9435375 - L2 LINE L2 -564 2750 2661 1471 168 13 52 chr1 272758289 272758579 -9435085 - L1MB7 LINE L1 -2375 3771 3498 2132 130 0 3 chr1 272758579 272758871 -9434793 - AluSx SINE Alu -21 291 1 1471 168 13 52 chr1 272758871 272758966 -9434698 - L1MB7 LINE L1 -2648 3498 3401 * 6755 182 10 24 chr1 272758964 272761350 -9432314 + L1PB4 LINE L1 3795 6147 -9 263 313 51 80 chr1 272761409 272761684 -9431980 - L2 LINE L2 -677 2637 2371 845 174 116 0 chr1 272761810 272761982 -9431682 + L1MC1 LINE L1 6137 6328 -5 204 129 0 0 chr1 272761995 272762026 -9431638 - L2 LINE L2 -92 3221 3191 1274 77 66 0 chr1 272762045 272762228 -9431436 - MER30 DNA MER1_type -35 195 1 1158 319 116 17 chr1 272762333 272763205 -9430459 - L2 LINE L2 -218 3054 2099 1993 119 7 26 chr1 272763206 272763509 -9430155 + AluSx SINE Alu 1 297 -15 279 258 0 16 chr1 272763550 272763612 -9430052 + polypurine Low_complexity Low_complexity 3 63 0 763 201 7 16 chr1 272763612 272764163 -9429501 + GA-rich Low_complexity Low_complexity 1 546 0 453 305 76 35 chr1 272764920 272765117 -9428547 - MIR SINE MIR -50 212 8 1456 153 40 127 chr1 272765896 272766275 -9427389 - MER7A DNA MER2_type -1 345 2 642 242 26 0 chr1 272766719 272766872 -9426792 + FAM SINE Alu 1 157 -18 1691 183 7 0 chr1 272766899 272767184 -9426480 - AluJb SINE Alu -25 287 1 802 259 103 21 chr1 272767397 272767687 -9425977 - MER5C DNA MER1_type 0 324 11 225 0 0 0 chr1 272767915 272767940 -9425724 + (T)n Simple_repeat Simple_repeat 1 25 0 615 332 64 9 chr1 272768316 272768659 -9425005 + L2 LINE L2 2952 3313 0 518 332 127 48 chr1 272769875 272770206 -9423458 + L2 LINE L2 2916 3272 0 2813 16 0 0 chr1 272770733 272771044 -9422620 + AluY SINE Alu 1 311 0 1967 121 13 10 chr1 272771513 272771811 -9421853 + AluSq SINE Alu 1 299 -14 238 292 52 44 chr1 272771960 272772116 -9421548 + MIR SINE MIR 42 198 -64 184 149 119 75 chr1 272772462 272772529 -9421135 + L2 LINE L2 1908 1977 -1337 2525 56 0 3 chr1 272773214 272773520 -9420144 - AluY SINE Alu -6 305 1 222 246 115 0 chr1 272774641 272774702 -9418962 - MIR SINE MIR -186 76 9 927 90 116 79 chr1 272774817 272775006 -9418658 + MER1B DNA MER1_type 139 334 -5 1537 159 110 61 chr1 272775179 272775606 -9418058 + LTR7 LTR ERV1 1 448 -2 23 0 0 0 chr1 272775635 272775658 -9418006 + AT_rich Low_complexity Low_complexity 1 23 0 496 265 88 13 chr1 272775677 272775767 -9417897 - MER112 DNA MER1_type 0 256 174 2168 126 0 0 chr1 272775767 272776069 -9417595 + AluSx SINE Alu 1 302 -10 496 265 88 13 chr1 272776069 272776216 -9417448 - MER112 DNA MER1_type -82 174 1 200 227 0 0 chr1 272776918 272776962 -9416702 + T-rich Low_complexity Low_complexity 1 44 0 2034 119 6 54 chr1 272777005 272777359 -9416305 + MER1B DNA MER1_type 1 337 0 1407 231 24 3 chr1 272777603 272777769 -9415895 - AluJo SINE Alu -16 296 120 216 0 0 0 chr1 272777769 272777793 -9415871 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1407 231 24 3 chr1 272777793 272777916 -9415748 - AluJo SINE Alu -192 120 1 245 324 66 29 chr1 272779381 272779517 -9414147 + MIR SINE MIR 47 187 -75 233 83 0 42 chr1 272781556 272781604 -9412060 + L1MA3 LINE L1 6260 6305 0 2099 121 0 20 chr1 272781608 272781913 -9411751 + AluSx SINE Alu 1 299 -13 27 49 0 0 chr1 272782375 272782416 -9411248 + AT_rich Low_complexity Low_complexity 1 41 0 1788 171 3 14 chr1 272783359 272783651 -9410013 - AluJo SINE Alu -23 289 1 22 70 0 0 chr1 272783697 272783740 -9409924 + AT_rich Low_complexity Low_complexity 1 43 0 295 257 73 59 chr1 272784484 272784620 -9409044 + MIR SINE MIR 70 207 -55 23 33 0 0 chr1 272784649 272784679 -9408985 + AT_rich Low_complexity Low_complexity 1 30 0 2334 93 0 0 chr1 272784685 272784976 -9408688 + AluSg SINE Alu 1 291 -19 2096 152 37 37 chr1 272785152 272785701 -9407963 + MLT2A2 LTR ERVL 1 554 0 279 323 75 3 chr1 272785715 272785901 -9407763 + MIR SINE MIR 2 254 -8 2549 54 0 0 chr1 272786022 272786320 -9407344 + AluY SINE Alu 1 298 -13 608 110 0 10 chr1 272786847 272786947 -9406717 + (TTCC)n Simple_repeat Simple_repeat 1 99 0 1494 181 66 0 chr1 272786947 272787206 -9406458 - AluJo SINE Alu -27 285 10 2195 102 3 0 chr1 272787444 272787729 -9405935 + AluSx SINE Alu 3 288 -24 4506 118 52 60 chr1 272789430 272790104 -9403560 - L1PA16 LINE L1 -9 6157 5492 2190 129 0 0 chr1 272790104 272790399 -9403265 - AluSq SINE Alu -18 295 1 4506 118 52 60 chr1 272790399 272790654 -9403010 - L1PA16 LINE L1 -674 5492 5236 586 235 34 7 chr1 272790654 272790803 -9402861 + MER58A DNA MER1_type 43 195 -29 407 130 0 14 chr1 272790803 272790872 -9402792 + MLT1A1 LTR MaLR 1 68 -297 690 185 117 52 chr1 272790872 272791254 -9402410 - LTR7 LTR ERV1 0 450 1 1348 175 63 7 chr1 272791254 272791540 -9402124 + MLT1A1 LTR MaLR 64 365 0 321 109 0 0 chr1 272792610 272792665 -9400999 + (GAAA)n Simple_repeat Simple_repeat 4 58 0 2139 110 0 0 chr1 272792665 272792947 -9400717 - AluSx SINE Alu -30 282 1 342 253 12 0 chr1 272792948 272793031 -9400633 - MIR SINE MIR -36 226 143 338 351 6 24 chr1 272794100 272794265 -9399399 + MIR3 SINE MIR 44 205 -3 2383 151 31 66 chr1 272794668 272795211 -9398453 + LTR9 LTR ERV1 1 524 -88 686 150 20 41 chr1 272795239 272795386 -9398278 + LTR9 LTR ERV1 458 601 -11 316 364 54 0 chr1 272795834 272795963 -9397701 - L2 LINE L2 0 3272 3137 817 158 125 0 chr1 272796644 272796796 -9396868 - FAM SINE Alu 0 175 5 189 0 0 0 chr1 272796809 272796830 -9396834 + (T)n Simple_repeat Simple_repeat 1 21 0 273 310 121 37 chr1 272797258 272797394 -9396270 + MIR SINE MIR 1 148 -60 294 221 116 11 chr1 272797569 272797664 -9396000 - MER103 DNA DNA -51 115 11 2183 129 0 3 chr1 272797931 272798240 -9395424 + AluSg SINE Alu 1 308 -2 306 202 40 23 chr1 272798822 272798995 -9394669 + (TA)n Simple_repeat Simple_repeat 1 176 0 536 293 93 64 chr1 272799040 272799621 -9394043 + L1 LINE L1 2690 3287 -2859 1585 206 3 7 chr1 272799624 272799911 -9393753 + AluJb SINE Alu 3 288 -24 800 185 64 108 chr1 272800144 272800393 -9393271 + MER7A DNA MER2_type 4 239 -107 431 221 158 20 chr1 272800441 272800596 -9393068 + Tigger3(Golem) DNA MER2_type 2869 3029 0 35 83 0 0 chr1 272800705 272800789 -9392875 + AT_rich Low_complexity Low_complexity 1 84 0 285 98 0 0 chr1 272800972 272801013 -9392651 + (TG)n Simple_repeat Simple_repeat 2 42 0 263 257 67 9 chr1 272801117 272801222 -9392442 + L1ME LINE L1 5657 5767 -354 642 229 0 0 chr1 272802399 272802530 -9391134 - FLAM_C SINE Alu -2 131 1 349 217 0 0 chr1 272802530 272802599 -9391065 - L1MB1 LINE L1 -201 5967 5899 426 260 110 0 chr1 272802751 272802878 -9390786 - L2 LINE L2 -4 3309 3169 21 36 0 0 chr1 272804333 272804361 -9389303 + AT_rich Low_complexity Low_complexity 1 28 0 294 247 62 0 chr1 272805222 272805303 -9388361 - MIR SINE MIR -48 214 129 249 234 16 16 chr1 272805483 272805547 -9388117 - L2 LINE L2 0 3313 3250 352 265 54 48 chr1 272805695 272805842 -9387822 + MLT1L LTR MaLR 120 267 -348 226 203 0 34 chr1 272806084 272806143 -9387521 + MLT1K LTR MaLR 514 570 -18 21 0 0 0 chr1 272806467 272806488 -9387176 + AT_rich Low_complexity Low_complexity 1 21 0 491 281 15 7 chr1 272806701 272806836 -9386828 - AluJo SINE Alu -92 220 85 238 360 70 0 chr1 272807421 272807507 -9386157 - L2 LINE L2 -12 3260 3169 2207 113 0 3 chr1 272807640 272807941 -9385723 - AluSx SINE Alu -10 302 3 828 256 78 7 chr1 272808279 272808679 -9384985 + LTR40b LTR ERVL 7 462 0 914 131 0 0 chr1 272809167 272809289 -9384375 - FLAM_C SINE Alu -16 127 6 1416 125 0 9 chr1 272810509 272810725 -9382939 - L1PA15 LINE L1 -13 6152 5939 22 0 0 0 chr1 272812416 272812438 -9381226 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr1 272812684 272812707 -9380957 + AT_rich Low_complexity Low_complexity 1 23 0 204 103 62 31 chr1 272813511 272813608 -9380056 + (TA)n Simple_repeat Simple_repeat 2 101 0 235 243 54 20 chr1 272813620 272813768 -9379896 + (TATAG)n Simple_repeat Simple_repeat 2 154 0 * 356 211 22 54 chr1 272813678 272813936 -9379728 + (CTATA)n Simple_repeat Simple_repeat 1 249 0 330 26 0 0 chr1 272813972 272814011 -9379653 + (CA)n Simple_repeat Simple_repeat 2 40 0 303 85 0 0 chr1 272814071 272814118 -9379546 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr1 272814275 272814303 -9379361 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr1 272814452 272814479 -9379185 + AT_rich Low_complexity Low_complexity 1 27 0 1882 148 0 32 chr1 272814490 272814800 -9378864 - AluSx SINE Alu -12 300 1 496 134 0 37 chr1 272814895 272814977 -9378687 - AluS SINE Alu -233 79 1 2953 221 39 38 chr1 272815488 272816313 -9377351 + L1MEc LINE L1 49 874 -5522 1632 219 61 82 chr1 272816319 272816944 -9376720 + L1MEc LINE L1 1575 2186 -4210 2571 238 69 8 chr1 272817067 272817857 -9375807 + L1MEc LINE L1 2160 2997 -3218 1823 137 7 4 chr1 272817863 272818134 -9375530 + AluSx SINE Alu 2 273 -39 500 225 12 17 chr1 272818176 272818349 -9375315 + GA-rich Low_complexity Low_complexity 1 172 0 2201 115 0 3 chr1 272819974 272820278 -9373386 + AluSc SINE Alu 1 303 -6 676 193 0 0 chr1 272820900 272821019 -9372645 - FLAM_A SINE Alu -11 122 4 764 276 86 0 chr1 272821290 272821569 -9372095 - L1ME3A LINE L1 0 6170 5868 237 290 74 30 chr1 272821625 272821963 -9371701 + L1MEc LINE L1 2983 3335 -2880 715 164 6 97 chr1 272822268 272822433 -9371231 + MER58 DNA MER1_type 27 176 -2244 339 330 0 0 chr1 272822448 272822560 -9371104 + L1MEc LINE L1 3781 3892 -2323 449 91 0 0 chr1 272823090 272823156 -9370508 - Charlie5 DNA MER1_type -303 2309 2244 390 217 78 9 chr1 272823164 272823279 -9370385 - Charlie5 DNA MER1_type -2489 123 1 435 275 118 36 chr1 272823326 272823606 -9370058 + L1MC4 LINE L1 7495 7797 -245 335 242 52 65 chr1 272823629 272823782 -9369882 + L1MC5 LINE L1 7781 7931 -30 403 217 157 17 chr1 272824036 272824151 -9369513 - L2 LINE L2 -5 3267 3137 604 307 55 5 chr1 272825095 272825297 -9368367 + MIR SINE MIR 12 223 -39 2014 133 3 0 chr1 272826432 272826726 -9366938 - AluSx SINE Alu -17 295 1 516 326 22 39 chr1 272826875 272827105 -9366559 + L3 LINE CR1 877 1102 -475 960 277 110 62 chr1 272827127 272828069 -9365595 + L1ME LINE L1 6 993 -5077 2449 69 0 25 chr1 272828737 272829055 -9364609 + AluY SINE Alu 1 310 -1 433 311 44 7 chr1 272829414 272829549 -9364115 - MIR SINE MIR -111 151 12 180 0 0 0 chr1 272829569 272829589 -9364075 + (A)n Simple_repeat Simple_repeat 1 20 0 1990 127 0 13 chr1 272830415 272830714 -9362950 + AluSx SINE Alu 1 295 -17 1829 192 62 31 chr1 272831540 272831926 -9361738 + MER67A LTR ERV1 9 406 -137 261 146 0 0 chr1 272832081 272832129 -9361535 + (TA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr1 272834619 272834640 -9359024 + AT_rich Low_complexity Low_complexity 1 21 0 215 156 133 0 chr1 272836787 272836832 -9356832 - L2 LINE L2 0 3313 3263 237 270 16 0 chr1 272836979 272837042 -9356622 - L2 LINE L2 -31 3241 3178 255 357 62 51 chr1 272837065 272837421 -9356243 - L2 LINE L2 -64 3208 2849 270 324 69 0 chr1 272837459 272837561 -9356103 + MIR SINE MIR 69 177 -85 357 247 0 0 chr1 272839599 272839684 -9353980 + L1MA9 LINE L1 6228 6312 0 1322 147 173 61 chr1 272839873 272840185 -9353479 + MER7A DNA MER2_type 2 346 0 306 252 96 17 chr1 272840405 272840520 -9353144 + L1ME4a LINE L1 5754 5877 -244 2280 96 0 26 chr1 272841393 272841705 -9351959 - AluSx SINE Alu -8 304 1 219 332 99 71 chr1 272841945 272842674 -9350990 - L2 LINE L2 -787 2527 1779 285 98 0 0 chr1 272844813 272844854 -9348810 + (T)n Simple_repeat Simple_repeat 1 41 0 222 171 0 0 chr1 272845870 272845911 -9347753 + (TA)n Simple_repeat Simple_repeat 2 42 0 486 294 53 22 chr1 272846402 272846451 -9347213 - L1ME3 LINE L1 -1 6161 6115 1562 211 3 16 chr1 272846451 272846759 -9346905 + AluJo SINE Alu 1 304 -8 486 294 53 22 chr1 272846759 272846937 -9346727 - L1ME3 LINE L1 -47 6115 5927 2171 89 34 10 chr1 272847315 272847606 -9346058 - AluSq SINE Alu -15 298 1 318 339 48 0 chr1 272847723 272847847 -9345817 + MIR SINE MIR 32 161 -101 1416 182 0 4 chr1 272848049 272848291 -9345373 + AluSx SINE Alu 1 241 -71 255 61 0 0 chr1 272848538 272848571 -9345093 - Alu SINE Alu -275 33 1 249 257 29 29 chr1 272849660 272849730 -9343934 - L2 LINE L2 0 3272 3203 457 320 57 86 chr1 272849755 272850436 -9343228 + L2 LINE L2 2575 3239 -33 185 65 32 0 chr1 272850444 272850475 -9343189 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 207 409 0 0 chr1 272850478 272850544 -9343120 - L2 LINE L2 -88 3184 3119 2513 59 0 0 chr1 272851482 272851786 -9341878 + AluY SINE Alu 1 304 -7 329 238 171 9 chr1 272853490 272853595 -9340069 - L2 LINE L2 -7 3306 3185 1543 279 107 48 chr1 272853790 272854759 -9338905 + L2 LINE L2 2040 3064 -249 494 95 59 18 chr1 272854800 272854969 -9338695 + (TA)n Simple_repeat Simple_repeat 1 176 0 34 55 0 0 chr1 272854969 272855024 -9338640 + AT_rich Low_complexity Low_complexity 1 55 0 414 0 0 0 chr1 272855577 272855623 -9338041 + (TG)n Simple_repeat Simple_repeat 2 47 0 2116 125 7 0 chr1 272858722 272859011 -9334653 + AluSx SINE Alu 3 293 -19 1683 153 21 0 chr1 272859073 272859354 -9334310 - L1PB4 LINE L1 -71 6085 5799 246 315 117 19 chr1 272859899 272860061 -9333603 - L2 LINE L2 -1312 2002 1825 340 232 33 80 chr1 272860277 272860428 -9333236 + L1M4 LINE L1 4672 4815 -1331 225 291 64 14 chr1 272860557 272860698 -9332966 - L1ME LINE L1 -413 5749 5602 312 331 37 37 chr1 272860741 272860983 -9332681 - L1ME LINE L1 -2254 5554 5313 209 121 45 15 chr1 272861086 272861152 -9332512 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 31 0 0 chr1 272861193 272861225 -9332439 + AT_rich Low_complexity Low_complexity 1 32 0 304 257 62 71 chr1 272861406 272861519 -9332145 - L2 LINE L2 -52 3261 3150 321 314 46 34 chr1 272861638 272861813 -9331851 - L2 LINE L2 -1866 1448 1272 23 0 0 0 chr1 272862039 272862062 -9331602 + AT_rich Low_complexity Low_complexity 1 23 0 181 393 79 0 chr1 272863201 272863341 -9330323 - L2 LINE L2 -858 2456 2306 2154 117 3 0 chr1 272863492 272863790 -9329874 + AluSg SINE Alu 1 299 -11 183 347 83 8 chr1 272864223 272864344 -9329320 - L2 LINE L2 -1895 1419 1290 298 257 124 45 chr1 272865186 272865287 -9328377 + L1ME4a LINE L1 5707 5799 -322 2221 96 0 32 chr1 272865287 272865600 -9328064 - AluSq SINE Alu -5 308 6 298 257 124 45 chr1 272865600 272865829 -9327835 + L1ME4a LINE L1 5799 6063 -58 23 0 0 0 chr1 272866854 272866877 -9326787 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr1 272867763 272867804 -9325860 + AT_rich Low_complexity Low_complexity 1 41 0 197 105 0 26 chr1 272868203 272868241 -9325423 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 565 186 0 0 chr1 272868257 272868359 -9325305 + FRAM SINE Alu 49 150 -26 2090 214 18 31 chr1 272869534 272870048 -9323616 - MER74A LTR ERVL -28 530 24 243 61 0 0 chr1 272870055 272870088 -9323576 + (CA)n Simple_repeat Simple_repeat 1 33 0 2136 98 0 7 chr1 272870910 272871197 -9322467 - AluSg SINE Alu -2 308 24 273 119 0 0 chr1 272871197 272871239 -9322425 + AluSp/q SINE Alu 249 290 -13 198 71 0 0 chr1 272871240 272871268 -9322396 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 2234 105 3 19 chr1 272872232 272872546 -9321118 + AluSg1 SINE Alu 1 309 0 276 297 27 34 chr1 272872711 272872859 -9320805 - L2 LINE L2 -21 3292 3146 31 0 0 0 chr1 272873848 272873879 -9319785 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr1 272874279 272874308 -9319356 + (CA)n Simple_repeat Simple_repeat 1 29 0 1140 62 0 0 chr1 272876302 272876448 -9317216 - L1PA4 LINE L1 0 6155 6010 1816 156 24 0 chr1 272876506 272876794 -9316870 + AluJb SINE Alu 1 295 -17 21 0 0 0 chr1 272876812 272876833 -9316831 + AT_rich Low_complexity Low_complexity 1 21 0 2002 172 53 5 chr1 272876851 272877228 -9316436 - MSTA LTR MaLR 0 428 34 473 187 11 0 chr1 272877230 272877321 -9316343 - MSTA LTR MaLR -303 125 34 727 161 8 0 chr1 272877323 272877447 -9316217 - MSTA LTR MaLR -303 125 1 240 228 0 0 chr1 272878183 272878240 -9315424 - Charlie1 DNA MER1_type -2700 61 5 2249 105 0 7 chr1 272879041 272879346 -9314318 - AluSx SINE Alu -9 303 1 234 252 155 10 chr1 272879845 272879948 -9313716 + L2 LINE L2 3115 3232 -81 2463 57 0 0 chr1 272879963 272880259 -9313405 - AluY SINE Alu -15 296 1 1971 99 0 8 chr1 272880636 272880898 -9312766 - AluSx SINE Alu -52 260 1 272 243 155 10 chr1 272881397 272881500 -9312164 + L2 LINE L2 3115 3232 -81 2589 40 0 0 chr1 272881515 272881811 -9311853 - AluY SINE Alu -15 296 1 1187 206 12 0 chr1 272881826 272882073 -9311591 - L1MA9 LINE L1 -33 6279 6030 24 32 0 0 chr1 272883180 272883211 -9310453 + AT_rich Low_complexity Low_complexity 1 31 0 321 26 0 0 chr1 272883263 272883301 -9310363 + (TA)n Simple_repeat Simple_repeat 2 39 0 28 0 0 0 chr1 272883322 272883350 -9310314 + AT_rich Low_complexity Low_complexity 1 28 0 187 318 16 16 chr1 272884836 272884899 -9308765 + L2 LINE L2 3195 3257 -56 506 255 127 33 chr1 272886578 272886790 -9306874 + MIR SINE MIR 31 262 0 282 317 199 14 chr1 272887041 272887262 -9306402 + L2 LINE L2 3009 3270 -2 4603 43 5 5 chr1 272887466 272888042 -9305622 + L1PA8 LINE L1 5597 6172 0 323 256 128 39 chr1 272888291 272888447 -9305217 + MER5B DNA MER1_type 1 170 -8 398 314 44 13 chr1 272889000 272889159 -9304505 - MIR SINE MIR -52 210 47 23 33 0 0 chr1 272890435 272890465 -9303199 + AT_rich Low_complexity Low_complexity 1 30 0 269 218 27 9 chr1 272890887 272890997 -9302667 + (CATA)n Simple_repeat Simple_repeat 3 114 0 256 299 197 34 chr1 272893246 272893363 -9300301 - L2 LINE L2 0 3272 3137 1670 166 57 38 chr1 272893414 272893782 -9299882 - THE1C LTR MaLR 0 375 1 547 310 99 75 chr1 272893991 272894755 -9298909 - L2 LINE L2 -896 2418 1636 379 241 56 126 chr1 272894835 272894892 -9298772 + MER112 DNA MER1_type 4 63 -197 1944 132 32 24 chr1 272894892 272895233 -9298431 + MER2 DNA MER2_type 1 344 0 379 241 56 126 chr1 272895233 272895445 -9298219 + MER112 DNA MER1_type 63 254 -6 2213 121 0 3 chr1 272895466 272895772 -9297892 + AluSx SINE Alu 1 305 -7 504 281 149 60 chr1 272896289 272896705 -9296959 - L3 LINE CR1 -183 1394 942 237 294 109 17 chr1 272896772 272896891 -9296773 - L3 LINE CR1 -790 787 658 193 455 18 0 chr1 272897098 272897210 -9296454 - L3 LINE CR1 -1297 280 167 26 64 0 0 chr1 272897694 272897741 -9295923 + AT_rich Low_complexity Low_complexity 1 47 0 522 260 85 47 chr1 272897773 272898228 -9295436 - L1ME1 LINE L1 -262 5904 5405 32 67 0 0 chr1 272899595 272899655 -9294009 + AT_rich Low_complexity Low_complexity 1 60 0 2263 106 0 0 chr1 272900767 272901070 -9292594 - AluSx SINE Alu -7 305 3 24 32 0 0 chr1 272901239 272901270 -9292394 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1 272901441 272901463 -9292201 + AT_rich Low_complexity Low_complexity 1 22 0 2207 114 0 0 chr1 272903544 272903842 -9289822 + AluSq SINE Alu 1 298 -15 2124 100 10 20 chr1 272904052 272904352 -9289312 - AluSc SINE Alu -12 297 1 1593 171 61 21 chr1 272908010 272908338 -9285326 - MER2 DNA MER2_type 0 344 4 788 232 133 0 chr1 272908469 272908680 -9284984 + MIR SINE MIR 8 246 -16 207 0 0 0 chr1 272908685 272908708 -9284956 + (TTA)n Simple_repeat Simple_repeat 1 23 0 267 251 216 24 chr1 272908765 272908932 -9284732 + MIR3 SINE MIR 5 203 -5 2217 125 0 0 chr1 272909115 272909427 -9284237 + AluSx SINE Alu 1 312 0 220 203 37 49 chr1 272909715 272909878 -9283786 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 278 286 8 67 chr1 272911305 272911424 -9282240 - L2 LINE L2 -2 3311 3200 304 191 0 0 chr1 272911443 272911506 -9282158 - AluJo SINE Alu 0 302 240 1053 144 46 26 chr1 272911506 272911701 -9281963 - AluJo SINE Alu -113 199 1 28 29 0 0 chr1 272911702 272911737 -9281927 + AT_rich Low_complexity Low_complexity 1 35 0 267 103 0 0 chr1 272912452 272912491 -9281173 + MADE1 DNA Mariner 42 80 0 29 0 0 0 chr1 272913173 272913202 -9280462 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 272914832 272914853 -9278811 + AT_rich Low_complexity Low_complexity 1 21 0 653 247 29 0 chr1 272915919 272916089 -9277575 - MER58B DNA MER1_type -2 339 165 332 298 21 21 chr1 272917710 272917851 -9275813 + (TATATG)n Simple_repeat Simple_repeat 4 144 0 216 0 0 0 chr1 272918341 272918365 -9275299 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2044 98 0 4 chr1 272918371 272918635 -9275029 - AluSg SINE Alu -47 263 1 1481 154 7 53 chr1 272919334 272919633 -9274031 + AluJo SINE Alu 23 307 -5 642 236 85 0 chr1 272923387 272923552 -9270112 - MIR SINE MIR -49 213 35 234 0 0 0 chr1 272923652 272923678 -9269986 + (T)n Simple_repeat Simple_repeat 1 26 0 2194 101 7 0 chr1 272923807 272924095 -9269569 - AluSx SINE Alu -22 290 1 281 269 54 67 chr1 272926383 272926532 -9267132 - MIR SINE MIR -46 216 70 192 323 0 0 chr1 272926704 272926766 -9266898 + L2 LINE L2 3164 3225 -88 291 362 81 0 chr1 272926829 272927003 -9266661 + MIR SINE MIR 65 252 -10 21 71 0 0 chr1 272927013 272927055 -9266609 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr1 272929089 272929112 -9264552 + AT_rich Low_complexity Low_complexity 1 23 0 1865 147 7 10 chr1 272930478 272930778 -9262886 + AluJo SINE Alu 1 299 -13 255 339 87 39 chr1 272930905 272931032 -9262632 + L2 LINE L2 3121 3253 -19 199 301 169 0 chr1 272933195 272933278 -9260386 + L2 LINE L2 3160 3256 -16 190 326 0 0 chr1 272934297 272934346 -9259318 - L2 LINE L2 -15 3298 3250 1294 173 12 28 chr1 272934524 272934778 -9258886 - L1MD3 LINE L1 -17 7978 7729 207 100 0 0 chr1 272935992 272936022 -9257642 + (TC)n Simple_repeat Simple_repeat 1 30 0 1429 174 84 39 chr1 272937082 272937438 -9256226 - MER93b LTR ERV1 0 373 2 1959 68 133 5 chr1 272938121 272938504 -9255160 + L1PA8 LINE L1 5741 6172 0 323 256 128 39 chr1 272938753 272938909 -9254755 + MER5B DNA MER1_type 1 170 -8 3153 42 16 14 chr1 272939443 272939869 -9253795 - L1PA8 LINE L1 -149 6023 5597 282 317 199 14 chr1 272940073 272940294 -9253370 - L2 LINE L2 -2 3270 3009 506 255 127 33 chr1 272940545 272940757 -9252907 - MIR SINE MIR 0 262 31 187 318 16 16 chr1 272942436 272942499 -9251165 - L2 LINE L2 -56 3257 3195 28 0 0 0 chr1 272943984 272944012 -9249652 + AT_rich Low_complexity Low_complexity 1 28 0 321 26 0 0 chr1 272944033 272944071 -9249593 + (TA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr1 272944123 272944154 -9249510 + AT_rich Low_complexity Low_complexity 1 31 0 779 183 20 0 chr1 272945261 272945414 -9248250 + L1MA9 LINE L1 6030 6185 -127 369 0 0 0 chr1 273000665 273000706 -9192958 + (TA)n Simple_repeat Simple_repeat 1 41 0 208 216 27 95 chr1 273006435 273006509 -9187155 - MIR SINE MIR -75 187 119 504 262 0 0 chr1 273006605 273006731 -9186933 - MER117 DNA MER1_type -70 127 2 1519 142 30 80 chr1 273007001 273007106 -9186558 + MER33 DNA MER1_type 1 110 -2475 2351 90 3 0 chr1 273007106 273007405 -9186259 - AluSp SINE Alu -13 300 1 1519 142 30 80 chr1 273007405 273007638 -9186026 + MER33 DNA MER1_type 110 322 -2 284 264 136 21 chr1 273008869 273009009 -9184655 + L2 LINE L2 2881 3036 -277 508 298 44 0 chr1 273009645 273009803 -9183861 + L2 LINE L2 3147 3311 -2 261 146 0 0 chr1 273010661 273010709 -9182955 + (TA)n Simple_repeat Simple_repeat 1 48 0 471 114 57 0 chr1 273011651 273011721 -9181943 + MADE1 DNA Mariner 4 77 -3 2321 139 13 31 chr1 273012140 273012340 -9181324 + THE1C LTR MaLR 1 192 -183 2987 131 57 12 chr1 273012340 273012829 -9180835 + MER9 LTR ERVK 1 511 0 2321 139 13 31 chr1 273012829 273013010 -9180654 + THE1C LTR MaLR 192 375 0 230 246 15 15 chr1 273013751 273013816 -9179848 - MLT1K LTR MaLR -339 249 185 456 125 0 16 chr1 273014382 273014446 -9179218 + FLAM_A SINE Alu 55 117 -25 893 285 73 47 chr1 273014863 273015357 -9178307 - MLT1J LTR MaLR -4 507 1 212 262 16 0 chr1 273015764 273015825 -9177839 + CT-rich Low_complexity Low_complexity 1 62 0 235 226 191 0 chr1 273016155 273016239 -9177425 + L2 LINE L2 3169 3268 -4 1929 132 28 3 chr1 273017173 273017462 -9176202 + AluSc SINE Alu 1 296 -13 539 285 78 0 chr1 273017621 273017800 -9175864 - MIR SINE MIR -69 193 1 1999 108 11 4 chr1 273018352 273018631 -9175033 - AluSx SINE Alu -31 281 1 3228 253 44 13 chr1 273020352 273021332 -9172332 + L1M4 LINE L1 3502 4511 -1635 302 308 82 33 chr1 273021628 273021810 -9171854 + MIR SINE MIR 69 259 -3 2005 223 36 9 chr1 273022067 273022592 -9171072 + L1ME LINE L1 4130 4668 -1478 2169 160 33 26 chr1 273022594 273023137 -9170527 + MLT2A2 LTR ERVL 1 554 0 2794 206 21 44 chr1 273023144 273024176 -9169488 + L1ME LINE L1 4674 5680 -490 1917 144 7 10 chr1 273024483 273024774 -9168890 - AluJo SINE Alu -20 292 3 339 89 0 0 chr1 273025056 273025112 -9168552 + (TC)n Simple_repeat Simple_repeat 1 56 0 489 311 100 11 chr1 273025276 273025466 -9168198 - MIR SINE MIR -24 238 32 242 308 68 26 chr1 273025539 273025656 -9168008 + L2 LINE L2 3146 3267 -5 509 241 105 6 chr1 273025965 273026127 -9167537 - MIR SINE MIR -84 178 1 279 179 0 0 chr1 273026542 273026609 -9167055 + (CTGTG)n Simple_repeat Simple_repeat 2 68 0 8503 62 4 5 chr1 273027101 273028109 -9165555 + LTR13 LTR ERVK 1 1007 0 6280 216 19 47 chr1 273028111 273029711 -9163953 - HERVK13 LTR ERVK -5599 2517 963 283 200 160 0 chr1 273029923 273029998 -9163666 - HERVK13 LTR ERVK -7277 839 753 * 3096 241 30 28 chr1 273029992 273030818 -9162846 - HERVK13 LTR ERVK -7288 828 1 8451 65 4 5 chr1 273030818 273031826 -9161838 - LTR13 LTR ERVK 0 1007 1 3379 134 64 0 chr1 273032814 273033313 -9160351 + LTR26B LTR ERV1 1 531 0 667 257 78 91 chr1 273034253 273034801 -9158863 + L1MEd LINE L1 551 1091 -5028 879 269 52 146 chr1 273034848 273035602 -9158062 + MER21B LTR ERV1 24 706 -157 22 35 0 0 chr1 273036870 273036899 -9156765 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr1 273037010 273037036 -9156628 + AT_rich Low_complexity Low_complexity 1 26 0 551 315 212 28 chr1 273037758 273038259 -9155405 + L2 LINE L2 1366 1958 -1356 1655 159 20 31 chr1 273038261 273038601 -9155063 - L1MA9 LINE L1 -48 6264 5929 867 337 92 17 chr1 273038651 273039251 -9154413 + L2 LINE L2 2069 2713 -601 198 342 114 11 chr1 273039280 273039464 -9154200 + L2 LINE L2 2698 2900 -414 183 266 248 18 chr1 273039665 273039774 -9153890 - L2 LINE L2 -1054 2260 2127 602 221 99 0 chr1 273040246 273040418 -9153246 - MER53 DNA DNA 0 189 1 434 211 96 0 chr1 273040442 273040546 -9153118 - L2 LINE L2 0 3313 3200 278 292 97 0 chr1 273040723 273040836 -9152828 + L1ME4a LINE L1 5986 6109 -12 27 49 0 0 chr1 273040877 273040918 -9152746 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr1 273041854 273041878 -9151786 + AT_rich Low_complexity Low_complexity 1 24 0 1394 74 0 6 chr1 273041922 273042098 -9151566 - AluSg1 SINE Alu -18 294 120 21 0 0 0 chr1 273042104 273042125 -9151539 + AT_rich Low_complexity Low_complexity 1 21 0 2454 42 0 3 chr1 273042138 273042427 -9151237 - AluY SINE Alu -23 288 1 1124 59 0 7 chr1 273042428 273042564 -9151100 - AluSg1 SINE Alu -174 135 1 32 26 0 0 chr1 273042569 273042608 -9151056 + AT_rich Low_complexity Low_complexity 1 39 0 241 258 117 42 chr1 273042820 273042940 -9150724 - MIR3 SINE MIR -11 197 69 185 333 0 0 chr1 273043041 273043092 -9150572 - MIR SINE MIR -138 70 20 200 344 16 0 chr1 273046127 273046191 -9147473 + L2 LINE L2 3175 3239 -33 209 311 0 0 chr1 273046210 273046271 -9147393 + GA-rich Low_complexity Low_complexity 1 61 0 191 310 0 0 chr1 273046720 273046778 -9146886 - L2 LINE L2 0 3313 3256 913 182 29 12 chr1 273046904 273047074 -9146590 + FRAM SINE Alu 1 173 -3 2196 125 0 0 chr1 273047120 273047417 -9146247 - AluSg SINE Alu -13 297 1 1899 151 13 7 chr1 273047443 273047748 -9145916 + AluSc SINE Alu 1 307 -2 1870 127 16 42 chr1 273047755 273048063 -9145601 + AluSx SINE Alu 12 311 -1 22 0 0 0 chr1 273048068 273048090 -9145574 + AT_rich Low_complexity Low_complexity 1 22 0 700 254 68 0 chr1 273048669 273048846 -9144818 - MER5A DNA MER1_type 0 189 1 346 234 13 13 chr1 273048997 273049067 -9144597 + Tigger2a DNA MER2_type 1 70 -364 290 207 103 0 chr1 273049067 273049125 -9144539 - MER2 DNA MER2_type 0 345 282 * 836 240 23 0 chr1 273049102 273049273 -9144391 - MER8 DNA MER2_type -62 177 3 1470 192 54 124 chr1 273049710 273050210 -9143454 + MLT1C LTR MaLR 3 467 0 213 132 26 0 chr1 273050231 273050269 -9143395 + (CA)n Simple_repeat Simple_repeat 2 40 0 406 216 0 0 chr1 273051038 273051126 -9142538 - L1PB4 LINE L1 -1 6155 6068 2606 143 29 12 chr1 273051228 273051555 -9142109 + Tigger2a DNA MER2_type 3 340 -2368 2779 184 74 77 chr1 273051555 273052284 -9141380 + LTR8A LTR ERV1 1 727 0 2606 143 29 12 chr1 273052284 273052377 -9141287 + Tigger2a DNA MER2_type 340 430 -4 293 288 126 61 chr1 273053900 273054098 -9139566 - MIR SINE MIR -50 212 2 3607 111 8 31 chr1 273054155 273054678 -9138986 + MER9 LTR ERVK 1 511 0 207 339 101 55 chr1 273054918 273055136 -9138528 - L2 LINE L2 0 3272 3045 513 279 62 17 chr1 273055901 273056080 -9137584 - MIR SINE MIR -9 253 67 2232 94 20 0 chr1 273057489 273057786 -9135878 + AluSp SINE Alu 1 303 -10 192 304 0 0 chr1 273057811 273057857 -9135807 - MIR SINE MIR -164 98 53 342 181 97 0 chr1 273059139 273059211 -9134453 - MADE1 DNA Mariner -1 79 1 356 270 81 14 chr1 273059237 273059385 -9134279 - MIR SINE MIR -75 187 30 248 306 129 79 chr1 273060610 273060927 -9132737 + L2 LINE L2 2645 2977 -337 930 71 0 0 chr1 273063006 273063146 -9130518 + (TG)n Simple_repeat Simple_repeat 1 140 0 619 278 30 0 chr1 273063152 273063285 -9130379 - AluJb SINE Alu -39 273 137 672 153 0 0 chr1 273063285 273063403 -9130261 + CT-rich Low_complexity Low_complexity 2 119 0 2634 55 0 0 chr1 273064094 273064405 -9129259 - AluY SINE Alu 0 311 1 318 279 100 32 chr1 273065037 273065227 -9128437 + MER112 DNA MER1_type 46 248 -12 21 82 0 0 chr1 273065707 273065756 -9127908 + AT_rich Low_complexity Low_complexity 1 49 0 2149 137 25 88 chr1 273066943 273067699 -9125965 + MER39B LTR ERV1 3 652 -1 1307 163 4 79 chr1 273068889 273068902 -9124762 - AluJo SINE Alu -17 295 283 285 98 0 0 chr1 273068902 273068943 -9124721 + (TG)n Simple_repeat Simple_repeat 2 42 0 1307 163 4 79 chr1 273068943 273069108 -9124556 - AluJo SINE Alu -29 283 143 773 150 0 15 chr1 273069108 273069241 -9124423 + FLAM_C SINE Alu 1 131 -2 1307 163 4 79 chr1 273069241 273069338 -9124326 - AluJo SINE Alu -169 143 40 241 245 0 0 chr1 273069567 273069616 -9124048 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 28 29 0 0 chr1 273071353 273071388 -9122276 + AT_rich Low_complexity Low_complexity 1 35 0 3174 130 79 7 chr1 273072384 273072938 -9120726 + LTR49 LTR ERV1 2 595 0 1485 123 181 77 chr1 273073016 273073381 -9120283 - MER4A LTR ERV1 -1 663 261 621 111 0 10 chr1 273073381 273073480 -9120184 - MER4A LTR ERV1 -566 98 1 2113 200 39 74 chr1 273074754 273075388 -9118276 + LTR9 LTR ERV1 1 612 0 2216 95 3 44 chr1 273075428 273075744 -9117920 + AluSg SINE Alu 1 303 -7 4587 124 6 45 chr1 273076107 273076698 -9116966 - LTR39 LTR ERV1 0 783 231 1087 143 0 30 chr1 273076698 273076866 -9116798 - FRAM SINE Alu 0 166 4 4587 124 6 45 chr1 273076866 273077089 -9116575 - LTR39 LTR ERV1 -552 231 1 380 187 0 0 chr1 273077481 273077556 -9116108 - MLT1H LTR MaLR 0 549 475 373 264 15 28 chr1 273077646 273077923 -9115741 - MLT1H LTR MaLR -217 332 7 279 161 65 0 chr1 273078153 273078215 -9115449 - L1MC4a LINE L1 -514 7294 7229 227 229 0 145 chr1 273078215 273078270 -9115394 - MLT1F1 LTR MaLR -442 125 84 2008 121 16 6 chr1 273078270 273078584 -9115080 + L1PA14 LINE L1 5841 6157 -4 227 229 0 145 chr1 273078584 273078611 -9115053 - MLT1F1 LTR MaLR -483 84 55 284 197 40 0 chr1 273078613 273078689 -9114975 - L1MC3 LINE L1 -669 7116 7038 * 1429 254 90 31 chr1 273078674 273079348 -9114316 - L1MEc LINE L1 -2798 3417 2655 3381 95 36 147 chr1 273079348 273080095 -9113569 - MER4A LTR ERV1 0 664 1 1429 254 90 31 chr1 273080095 273080488 -9113176 - L1MEc LINE L1 -3560 2655 2287 1872 154 4 0 chr1 273080516 273080817 -9112847 + AluSx SINE Alu 1 302 0 245 277 77 15 chr1 273080825 273081020 -9112644 - L1MEc LINE L1 -4087 2309 2103 2021 134 14 0 chr1 273081771 273082061 -9111603 + AluJb SINE Alu 1 294 -18 2127 118 3 13 chr1 273082742 273083056 -9110608 + AluSx SINE Alu 1 311 -1 315 0 0 0 chr1 273083426 273083461 -9110203 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 405 0 0 0 chr1 273083460 273083505 -9110159 + (TG)n Simple_repeat Simple_repeat 1 45 0 337 279 22 66 chr1 273084782 273084918 -9108746 + MIR SINE MIR 126 255 -7 415 303 61 28 chr1 273084935 273085362 -9108302 + LTR33A LTR ERVL 2 471 -52 192 111 0 0 chr1 273085367 273085403 -9108261 + (A)n Simple_repeat Simple_repeat 1 36 0 208 182 23 0 chr1 273085681 273085725 -9107939 + T-rich Low_complexity Low_complexity 3 47 0 22 0 0 0 chr1 273085879 273085901 -9107763 + AT_rich Low_complexity Low_complexity 1 22 0 192 272 12 74 chr1 273086654 273086735 -9106929 + MIR SINE MIR 79 154 -108 424 243 18 0 chr1 273087226 273087337 -9106327 + MLT1I LTR MaLR 294 406 -3 242 325 106 8 chr1 273087572 273087695 -9105969 + MIR SINE MIR 20 154 -108 200 59 29 0 chr1 273088979 273089013 -9104651 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr1 273089142 273089170 -9104494 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr1 273089196 273089229 -9104435 + AT_rich Low_complexity Low_complexity 1 33 0 2035 139 10 7 chr1 273090781 273091084 -9102580 + AluSx SINE Alu 1 304 -8 307 336 57 19 chr1 273091102 273091125 -9102539 + HAL1 LINE L1 1512 1533 -974 1376 177 203 19 chr1 273091125 273091544 -9102120 - LTR54B LTR ERV1 -2 496 1 307 336 57 19 chr1 273091544 273091782 -9101882 + HAL1 LINE L1 1533 1783 -724 236 246 0 0 chr1 273092164 273092229 -9101435 + HAL1 LINE L1 2084 2148 -359 2273 168 7 31 chr1 273092300 273092724 -9100940 - MLT2D LTR ERVL 0 414 1 237 33 0 0 chr1 273094735 273094765 -9098899 + (CAA)n Simple_repeat Simple_repeat 1 30 0 373 328 132 16 chr1 273095481 273095868 -9097796 - L1MC4 LINE L1 -805 7066 6572 2217 126 0 0 chr1 273095928 273096229 -9097435 - AluSx SINE Alu -11 301 1 307 223 174 35 chr1 273096588 273096605 -9097059 - L1MD3 LINE L1 -1 8038 8025 1969 177 3 11 chr1 273096605 273096956 -9096708 + MER7A DNA MER2_type 1 346 0 307 223 174 35 chr1 273096956 273097950 -9095714 - L1MD3 LINE L1 -14 8025 6904 193 245 19 38 chr1 273098489 273098542 -9095122 + MER5A DNA MER1_type 136 187 -2 2065 108 21 0 chr1 273098776 273099062 -9094602 + AluSx SINE Alu 6 297 -15 339 246 17 68 chr1 273099193 273099311 -9094353 - L2 LINE L2 -49 3264 3153 2082 54 0 4 chr1 273100619 273100879 -9092785 + L1PA5 LINE L1 5892 6150 -4 206 135 27 0 chr1 273100889 273100926 -9092738 + C-rich Low_complexity Low_complexity 3 40 0 1454 176 41 19 chr1 273100926 273101193 -9092471 - AluJo SINE Alu -10 302 30 2162 127 0 34 chr1 273101489 273101812 -9091852 - AluSx SINE Alu 0 312 1 511 253 12 25 chr1 273101812 273101974 -9091690 - L1MEd LINE L1 -5955 164 5 2128 109 0 67 chr1 273102664 273102994 -9090670 - AluSx SINE Alu -4 308 1 21 0 0 0 chr1 273103015 273103036 -9090628 + AT_rich Low_complexity Low_complexity 1 21 0 1148 200 18 36 chr1 273103745 273103970 -9089694 - AluJo SINE Alu -91 221 1 324 0 0 0 chr1 273104792 273104828 -9088836 + (TG)n Simple_repeat Simple_repeat 2 37 0 30 0 0 0 chr1 273104961 273104991 -9088673 + AT_rich Low_complexity Low_complexity 1 30 0 300 292 30 89 chr1 273105286 273105454 -9088210 - HAL1 LINE L1 -1520 987 830 2144 148 32 35 chr1 273105529 273105963 -9087701 + Tigger2a DNA MER2_type 2 434 0 21 0 0 0 chr1 273106515 273106536 -9087128 + AT_rich Low_complexity Low_complexity 1 21 0 200 255 0 0 chr1 273106726 273106773 -9086891 + (CCA)n Simple_repeat Simple_repeat 1 47 0 208 286 119 0 chr1 273106821 273106905 -9086759 - MIR SINE MIR -81 181 88 1938 206 7 10 chr1 273108144 273108562 -9085102 - L1MD3 LINE L1 -9 7986 7570 411 21 0 0 chr1 273110069 273110117 -9083547 + (TG)n Simple_repeat Simple_repeat 2 49 0 2269 230 120 5 chr1 273111412 273112061 -9081603 + MER44D DNA MER2_type 1 596 -9 2074 237 71 38 chr1 273112113 273112687 -9080977 + MLT1E LTR MaLR 1 593 0 683 234 10 29 chr1 273113031 273113236 -9080428 + LTR33 LTR ERVL 301 501 -20 189 375 38 0 chr1 273113590 273113670 -9079994 + L3b LINE CR1 1405 1487 -96 194 352 0 0 chr1 273114086 273114140 -9079524 - L3 LINE CR1 -6 1571 1518 241 314 12 12 chr1 273114926 273115012 -9078652 + (CA)n Simple_repeat Simple_repeat 2 87 0 1940 126 17 27 chr1 273115698 273115999 -9077665 - AluSx SINE Alu -14 298 1 633 287 23 0 chr1 273116661 273116835 -9076829 + MER5B DNA MER1_type 1 178 0 384 262 79 8 chr1 273116949 273117075 -9076589 + LTR16A1 LTR ERVL 200 334 -123 680 229 6 0 chr1 273117502 273117659 -9076005 + LTR16A1 LTR ERVL 300 457 0 874 63 87 0 chr1 273117808 273117934 -9075730 - MER85 DNA T2_type 0 139 3 1641 208 112 30 chr1 273117970 273118478 -9075186 + MER101B LTR ERV1 1 443 -31 295 259 112 84 chr1 273118583 273118726 -9074938 - L2 LINE L2 0 3313 3167 302 0 26 0 chr1 273119674 273119712 -9073952 + (TG)n Simple_repeat Simple_repeat 2 40 0 580 322 22 6 chr1 273119918 273120101 -9073563 - MER5A DNA MER1_type -3 186 1 429 225 42 42 chr1 273121385 273121505 -9072159 + L2 LINE L2 3190 3309 -4 1683 108 0 0 chr1 273121576 273121836 -9071828 - L1MA5 LINE L1 -4 6296 6037 9156 80 9 0 chr1 273122570 273124628 -9069036 + L1PA7 LINE L1 4081 6153 -1 1966 157 24 21 chr1 273124790 273125167 -9068497 - L1MB3 LINE L1 0 6183 5806 1719 172 20 10 chr1 273125167 273125464 -9068200 + AluJb SINE Alu 1 300 -12 198 167 0 0 chr1 273125514 273125550 -9068114 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 1264 161 5 5 chr1 273125553 273125771 -9067893 - L1MB3 LINE L1 -403 5780 5563 188 333 0 0 chr1 273126097 273126139 -9067525 - L2 LINE L2 -19 3253 3212 235 239 80 40 chr1 273126408 273126584 -9067080 - L1M4 LINE L1 -3235 3627 3445 2150 103 6 34 chr1 273126898 273127219 -9066445 - AluSx SINE Alu 0 312 1 289 315 70 58 chr1 273127251 273127492 -9066172 + L2 LINE L2 2432 2675 -639 2129 122 3 32 chr1 273127757 273128068 -9065596 + AluSq SINE Alu 1 302 -11 504 310 92 0 chr1 273129116 273129300 -9064364 + MIR SINE MIR 18 218 -44 1252 179 38 34 chr1 273129363 273129445 -9064219 - MER2 DNA MER2_type 0 345 265 6838 57 16 1 chr1 273129445 273131127 -9062537 + L1PA8 LINE L1 4462 6155 -17 1252 179 38 34 chr1 273131127 273131335 -9062329 - MER2 DNA MER2_type -80 265 54 8352 173 7 5 chr1 273131347 273133988 -9059676 - L1PB1 LINE L1 0 6151 3510 42419 37 1 1 chr1 273134023 273140174 -9053490 + L1PA3 LINE L1 8 6152 -3 31 26 0 0 chr1 273140174 273140212 -9053452 + AT_rich Low_complexity Low_complexity 1 38 0 8139 156 38 5 chr1 273140307 273142399 -9051265 - L1PBa LINE L1 -3464 3398 1093 3206 227 71 13 chr1 273142402 273143386 -9050278 - L1PBa LINE L1 -5817 1046 6 202 368 103 0 chr1 273143535 273143622 -9050042 - L2 LINE L2 -79 3193 3098 312 304 51 36 chr1 273143880 273144018 -9049646 - MIR SINE MIR -75 187 48 1809 173 45 70 chr1 273144055 273144265 -9049399 - L1MA9 LINE L1 0 7333 7119 2336 47 0 0 chr1 273144265 273144541 -9049123 - AluY SINE Alu -1 310 35 1809 173 45 70 chr1 273144541 273144861 -9048803 - L1MA9 LINE L1 -214 7119 6816 183 80 0 0 chr1 273144862 273144887 -9048777 + (TG)n Simple_repeat Simple_repeat 2 26 0 4744 180 20 5 chr1 273144901 273146201 -9047463 - L1MA9 LINE L1 -665 6668 5351 2164 244 34 9 chr1 273146205 273146912 -9046752 - L1MA9 LINE L1 -4516 2582 1839 327 196 0 56 chr1 273147015 273147122 -9046542 + C-rich Low_complexity Low_complexity 6 106 0 1387 124 5 0 chr1 273147122 273147315 -9046349 - AluSx SINE Alu -118 194 1 263 163 61 0 chr1 273147325 273147374 -9046290 - FLAM SINE Alu -8 125 74 421 204 47 152 chr1 273148569 273148780 -9044884 - MER5A DNA MER1_type 0 189 1 216 289 141 16 chr1 273149227 273149348 -9044316 - MIR SINE MIR -42 220 85 2828 172 148 5 chr1 273151364 273152147 -9041517 + L1MA8 LINE L1 5193 6090 -201 266 225 113 0 chr1 273152161 273152241 -9041423 + L1MA8 LINE L1 6166 6254 -37 2122 103 3 10 chr1 273153331 273153622 -9040042 + AluSc SINE Alu 1 289 -20 577 187 71 92 chr1 273153735 273154003 -9039661 - MLT1A1 LTR MaLR -11 385 61 2010 162 7 0 chr1 273154003 273154312 -9039352 - AluSx SINE Alu -1 311 1 577 187 71 92 chr1 273154312 273154365 -9039299 - MLT1A1 LTR MaLR -335 61 8 901 154 166 4 chr1 273154464 273154681 -9038983 + L1MA8 LINE L1 5992 6257 -34 2039 118 21 0 chr1 273154681 273154969 -9038695 + AluSx SINE Alu 1 294 -18 901 154 166 4 chr1 273154969 273155004 -9038660 + L1MA8 LINE L1 6257 6285 -6 238 163 41 0 chr1 273155220 273155269 -9038395 + L2 LINE L2 3218 3268 -4 2852 176 107 3 chr1 273155551 273156186 -9037478 - L1MB8 LINE L1 -1 6177 5477 441 0 0 0 chr1 273156485 273156534 -9037130 + (CA)n Simple_repeat Simple_repeat 2 50 0 351 295 36 14 chr1 273157651 273157790 -9035874 - MIR SINE MIR -3 259 118 261 197 82 0 chr1 273158958 273159019 -9034645 + MIR SINE MIR 175 240 -22 2152 125 0 10 chr1 273159430 273159725 -9033939 + AluSq SINE Alu 1 292 -21 541 282 69 67 chr1 273159741 273160154 -9033510 + MLT1G LTR MaLR 76 583 -7 228 67 0 0 chr1 273160353 273160383 -9033281 + (CA)n Simple_repeat Simple_repeat 1 30 0 577 293 29 19 chr1 273160958 273161166 -9032498 - L1MC/D LINE L1 -1997 5811 5602 3716 174 27 11 chr1 273161319 273161979 -9031685 - LTR51 LTR ERV1 0 671 1 3919 61 4 0 chr1 273162014 273162486 -9031178 - L1PA7 LINE L1 0 6154 5681 836 52 0 0 chr1 273162486 273162583 -9031081 + L1PA7 LINE L1 5570 5666 -488 206 324 67 57 chr1 273163371 273163476 -9030188 + L2 LINE L2 3167 3272 0 226 328 128 8 chr1 273163524 273163649 -9030015 + L2 LINE L2 3133 3272 0 402 289 79 7 chr1 273164270 273164422 -9029242 - MIR SINE MIR -11 251 89 234 251 87 76 chr1 273164496 273164771 -9028893 + L1ME4a LINE L1 5712 5989 -132 2302 101 0 0 chr1 273164985 273165272 -9028392 + AluSx SINE Alu 1 287 -25 271 265 98 29 chr1 273166639 273166741 -9026923 + MIR3 SINE MIR 76 184 -24 741 207 128 16 chr1 273167421 273167609 -9026055 - MER3 DNA MER1_type 0 209 1 409 254 39 132 chr1 273168381 273168661 -9025003 + MLT1K LTR MaLR 325 578 -10 3624 132 29 21 chr1 273168871 273169492 -9024172 - L1MC2 LINE L1 -13 6331 5706 372 203 0 0 chr1 273169748 273169817 -9023847 + MIR SINE MIR 82 150 -112 197 278 56 0 chr1 273169892 273169946 -9023718 + MIR SINE MIR 196 252 -10 2039 136 3 3 chr1 273170025 273170333 -9023331 + AluSx SINE Alu 1 308 -4 230 143 0 24 chr1 273170862 273170904 -9022760 - MER75 DNA T2_type 0 514 474 1186 126 6 33 chr1 273171178 273171361 -9022303 - L1PA8A LINE L1 -7 6124 5947 242 306 0 0 chr1 273172051 273172113 -9021551 - LTR16C LTR ERVL 0 491 430 926 170 130 0 chr1 273172284 273172484 -9021180 - L1MA9 LINE L1 -5 6307 6082 1150 236 80 45 chr1 273172502 273172551 -9021113 + MER57B LTR ERV1 41 87 -347 1993 159 140 8 chr1 273172551 273172929 -9020735 - MSTA LTR MaLR 0 428 1 1150 236 80 45 chr1 273172929 273173256 -9020408 + MER57B LTR ERV1 87 430 -4 416 153 12 47 chr1 273173266 273173351 -9020313 - L1MA9 LINE L1 -233 6079 5998 584 219 42 8 chr1 273173599 273173718 -9019946 + Tigger3(Golem) DNA MER2_type 1 123 -2906 * 3632 128 93 36 chr1 273173694 273173811 -9019853 + Tigger3(Golem) DNA MER2_type 2277 2386 -642 2110 194 53 37 chr1 273173811 273174185 -9019479 + MER65C LTR ERV1 1 385 -76 1623 142 13 52 chr1 273174185 273174494 -9019170 - AluJo SINE Alu -15 297 1 2110 194 53 37 chr1 273174494 273174573 -9019091 + MER65C LTR ERV1 385 461 0 3632 128 93 36 chr1 273174573 273174778 -9018886 + Tigger3(Golem) DNA MER2_type 2386 2578 -450 2474 177 55 20 chr1 273174778 273175236 -9018428 + MER101 LTR ERV1 1 474 0 3632 128 93 36 chr1 273175236 273175624 -9018040 + Tigger3(Golem) DNA MER2_type 2578 3028 0 1859 112 76 4 chr1 273176145 273176422 -9017242 + AluSx SINE Alu 1 297 -15 2078 129 3 3 chr1 273177656 273177951 -9015713 - AluSx SINE Alu -9 303 9 276 241 85 78 chr1 273178384 273178525 -9015139 - MIR SINE MIR -27 235 94 247 301 43 21 chr1 273178513 273178606 -9015058 + L2 LINE L2 3174 3268 -4 * 181 344 90 25 chr1 273179671 273179793 -9013871 - L2 LINE L2 -1 3312 3183 2351 110 0 0 chr1 273179814 273180122 -9013542 + AluSx SINE Alu 1 308 -4 1306 219 142 49 chr1 273180276 273180811 -9012853 - L1ME3A LINE L1 -4 6235 5651 212 204 45 0 chr1 273180887 273180931 -9012733 + CT-rich Low_complexity Low_complexity 3 48 0 760 205 14 21 chr1 273181251 273181449 -9012215 + L1MC4 LINE L1 6444 6638 -1357 976 262 37 0 chr1 273181465 273181763 -9011901 - L1ME3A LINE L1 -1927 4288 3980 4109 180 80 33 chr1 273181768 273182282 -9011382 + MER21B LTR ERV1 1 570 -293 2064 75 3 118 chr1 273182282 273182614 -9011050 + AluSc SINE Alu 1 294 -15 4109 180 80 33 chr1 273182614 273182921 -9010743 + MER21B LTR ERV1 570 861 -2 452 206 30 8 chr1 273182998 273183129 -9010535 - L1ME3A LINE L1 -5219 1177 1044 1059 244 42 116 chr1 273183153 273183211 -9010453 - MLT1E2 LTR MaLR -2 624 563 2144 104 0 0 chr1 273183211 273183490 -9010174 + AluSg SINE Alu 26 304 -6 1059 244 42 116 chr1 273183490 273183907 -9009757 - MLT1E2 LTR MaLR -63 563 184 658 232 37 5 chr1 273183912 273184102 -9009562 - L1ME3A LINE L1 -5915 481 286 1760 171 60 55 chr1 273184295 273184693 -9008971 + MLT1C LTR MaLR 4 403 -64 19979 178 35 23 chr1 273185091 273186540 -9007124 - L1PA14 LINE L1 -9 6803 5372 1302 117 241 44 chr1 273186540 273186789 -9006875 - AluSg1 SINE Alu -11 298 1 19979 178 35 23 chr1 273186789 273187054 -9006610 - L1PA14 LINE L1 -1440 5372 5112 2132 123 0 0 chr1 273187054 273187347 -9006317 - AluSx SINE Alu -19 293 1 19979 178 35 23 chr1 273187347 273188664 -9005000 - L1PA14 LINE L1 -1700 5112 3812 279 0 0 0 chr1 273188664 273188695 -9004969 + (TG)n Simple_repeat Simple_repeat 1 31 0 19979 178 35 23 chr1 273188695 273192317 -9001347 - L1PA14 LINE L1 -3000 3812 13 242 393 87 10 chr1 273192329 273192535 -9001129 - L3 LINE CR1 -60 1517 1296 2082 123 0 7 chr1 273193550 273193843 -8999821 - AluSx SINE Alu -1 311 21 358 197 77 60 chr1 273196423 273196540 -8997124 + L3 LINE CR1 1370 1488 -89 25 0 0 0 chr1 273197357 273197382 -8996282 + GC_rich Low_complexity Low_complexity 1 25 0 1377 193 27 51 chr1 273198381 273198676 -8994988 + AluJo SINE Alu 1 288 -24 449 369 76 16 chr1 273201156 273201641 -8992023 + L2 LINE L2 2330 2843 -471 289 301 123 20 chr1 273201814 273201960 -8991704 + L2 LINE L2 2955 3115 -157 2426 84 3 3 chr1 273202770 273203081 -8990583 - AluY SINE Alu 0 311 1 2115 117 24 0 chr1 273203087 273203385 -8990279 - AluJb SINE Alu -7 305 1 590 250 179 19 chr1 273203793 273204005 -8989659 + MIR SINE MIR 2 247 -15 29170 94 11 18 chr1 273204087 273210518 -8983146 - L1PA7 LINE L1 -6 6463 1 2279 122 0 0 chr1 273210532 273210835 -8982829 - AluSq SINE Alu -10 303 1 192 40 0 0 chr1 273210878 273210903 -8982761 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2150 94 7 3 chr1 273210917 273211203 -8982461 - AluSq SINE Alu -26 287 1 642 213 63 11 chr1 273212354 273212528 -8981136 - MER20 DNA MER1_type -6 213 31 795 279 61 15 chr1 273212937 273213199 -8980465 + L2 LINE L2 2026 2299 -1015 321 313 24 0 chr1 273213249 273213332 -8980332 + L2 LINE L2 3227 3311 -2 231 179 0 0 chr1 273213573 273213612 -8980052 - 5S rRNA rRNA -82 39 1 2162 115 0 13 chr1 273214025 273214337 -8979327 - AluSx SINE Alu -4 308 1 240 35 0 0 chr1 273215755 273215784 -8977880 + (A)n Simple_repeat Simple_repeat 1 29 0 221 258 212 0 chr1 273218386 273218452 -8975212 + L2 LINE L2 3196 3275 -38 728 219 12 30 chr1 273218540 273218709 -8974955 + MIR SINE MIR 70 235 -27 29 47 0 0 chr1 273219893 273219936 -8973728 + AT_rich Low_complexity Low_complexity 1 43 0 779 302 87 16 chr1 273219936 273220442 -8973222 - L1MC4a LINE L1 -1954 5854 5313 2058 91 25 0 chr1 273222039 273222358 -8971306 - AluSp SINE Alu 0 326 1 23 0 0 0 chr1 273222523 273222546 -8971118 + AT_rich Low_complexity Low_complexity 1 23 0 2375 88 0 3 chr1 273223085 273223390 -8970274 + AluSx SINE Alu 1 304 -8 342 281 41 8 chr1 273224125 273224246 -8969418 - MIR SINE MIR 0 262 138 2223 133 33 0 chr1 273224663 273225054 -8968610 + L1MA5A LINE L1 5871 6274 -23 207 0 0 0 chr1 273225139 273225162 -8968502 + (A)n Simple_repeat Simple_repeat 1 23 0 2306 62 0 4 chr1 273225162 273225438 -8968226 - AluY SINE Alu -36 275 1 778 180 78 44 chr1 273225622 273225828 -8967836 - MER20 DNA MER1_type 0 219 7 260 281 96 28 chr1 273226626 273226804 -8966860 - MIR SINE MIR -10 252 63 2376 68 10 0 chr1 273227137 273227431 -8966233 + AluY SINE Alu 1 297 -14 467 209 33 26 chr1 273227534 273227687 -8965977 + MER53 DNA DNA 35 188 -1 21 0 0 0 chr1 273228416 273228437 -8965227 + AT_rich Low_complexity Low_complexity 1 21 0 1964 153 0 16 chr1 273229180 273229487 -8964177 - AluSx SINE Alu -10 302 1 234 0 0 0 chr1 273231932 273231958 -8961706 + (TG)n Simple_repeat Simple_repeat 1 26 0 274 329 71 29 chr1 273232992 273233226 -8960438 - MIR SINE MIR 0 262 4 549 265 155 25 chr1 273233257 273233502 -8960162 + L2 LINE L2 832 1108 -2206 2223 127 3 0 chr1 273233651 273233950 -8959714 + AluSx SINE Alu 1 300 -12 426 244 0 0 chr1 273234693 273234812 -8958852 + (TA)n Simple_repeat Simple_repeat 1 119 0 301 294 24 0 chr1 273234847 273234932 -8958732 - L1MC4 LINE L1 -1339 6703 6617 2159 107 3 7 chr1 273234984 273235284 -8958380 + AluSx SINE Alu 1 299 -13 617 284 129 0 chr1 273238038 273238309 -8955355 + LTR16A LTR ERVL 143 448 -2 633 27 0 0 chr1 273238310 273238385 -8955279 + (CA)n Simple_repeat Simple_repeat 2 76 0 1072 251 92 47 chr1 273239379 273239910 -8953754 - L2 LINE L2 0 3313 2755 590 285 10 34 chr1 273239898 273240105 -8953559 + MIR SINE MIR 6 207 -55 * 910 274 62 78 chr1 273240171 273240656 -8953008 - L2 LINE L2 -540 2774 2298 29 0 0 0 chr1 273241655 273241684 -8951980 + AT_rich Low_complexity Low_complexity 1 29 0 197 230 14 0 chr1 273241684 273241758 -8951906 + (TA)n Simple_repeat Simple_repeat 1 75 0 2374 97 0 13 chr1 273243116 273243427 -8950237 - AluSg SINE Alu -3 307 1 31 26 0 0 chr1 273243531 273243569 -8950095 + AT_rich Low_complexity Low_complexity 1 38 0 443 268 8 8 chr1 273244132 273244255 -8949409 + MER5A DNA MER1_type 47 169 -20 284 325 26 20 chr1 273244133 273244284 -8949380 - MER5A DNA MER1_type -35 154 3 * 198 103 0 0 chr1 273244724 273244753 -8948911 + (TTC)n Simple_repeat Simple_repeat 2 30 0 337 303 49 28 chr1 273247444 273247586 -8946078 - MIR SINE MIR -67 195 51 707 245 125 14 chr1 273247808 273248024 -8945640 + MIR SINE MIR 2 241 -21 439 311 44 7 chr1 273248383 273248518 -8945146 - MIR SINE MIR -111 151 12 180 0 0 0 chr1 273248538 273248558 -8945106 + (A)n Simple_repeat Simple_repeat 1 20 0 2004 127 0 13 chr1 273249384 273249683 -8943981 + AluSx SINE Alu 1 295 -17 2405 177 54 27 chr1 273250509 273251030 -8942634 + MER67A LTR ERV1 9 543 0 246 236 0 0 chr1 273251030 273251084 -8942580 + MER67A LTR ERV1 490 543 0 24 0 0 0 chr1 273251786 273251810 -8941854 + AT_rich Low_complexity Low_complexity 1 24 0 1412 174 84 39 chr1 273252652 273253008 -8940656 + MER93b LTR ERV1 2 373 0 207 100 0 0 chr1 273254068 273254098 -8939566 + (GA)n Simple_repeat Simple_repeat 1 30 0 282 225 0 67 chr1 273255312 273255401 -8938263 + L1MD3 LINE L1 7729 7811 -184 180 0 0 0 chr1 273255620 273255640 -8938024 + (T)n Simple_repeat Simple_repeat 1 20 0 201 301 169 0 chr1 273256788 273256871 -8936793 - L2 LINE L2 -16 3256 3160 260 339 87 39 chr1 273259034 273259161 -8934503 - L2 LINE L2 -19 3253 3121 1894 147 7 10 chr1 273259288 273259588 -8934076 - AluJo SINE Alu -13 299 1 21 71 0 0 chr1 273262499 273262541 -8931123 + AT_rich Low_complexity Low_complexity 1 42 0 284 362 81 0 chr1 273262551 273262725 -8930939 - MIR SINE MIR -10 252 65 191 323 0 0 chr1 273262788 273262850 -8930814 - L2 LINE L2 -88 3225 3164 280 269 54 67 chr1 273263022 273263171 -8930493 + MIR SINE MIR 70 216 -46 183 322 181 19 chr1 273264127 273264332 -8929332 + L2 LINE L2 2928 3165 -107 2220 85 4 0 chr1 273265458 273265779 -8927885 + AluSx SINE Alu 1 322 0 2410 92 0 0 chr1 273265783 273266087 -8927577 + AluSx SINE Alu 1 304 -8 806 319 55 42 chr1 273266259 273266857 -8926807 - L1M2a LINE L1 -5090 2078 1473 215 299 26 0 chr1 273267456 273267533 -8926131 - L2 LINE L2 -577 2737 2659 3745 118 76 27 chr1 273267545 273268179 -8925485 + PABL_B LTR ERV1 3 667 0 2316 97 0 0 chr1 273268471 273268770 -8924894 - AluSc SINE Alu -10 299 1 234 0 0 0 chr1 273269190 273269216 -8924448 + (T)n Simple_repeat Simple_repeat 1 26 0 222 236 73 18 chr1 273269680 273269735 -8923929 - MER5A DNA MER1_type -83 106 49 2407 248 87 6 chr1 273269746 273270582 -8923082 - L1ME2 LINE L1 -2 6162 5259 494 130 0 0 chr1 273270592 273270661 -8923003 - AluJ/FLAM SINE Alu -243 69 1 2092 239 92 15 chr1 273270661 273271513 -8922151 - L1ME2 LINE L1 -978 5168 4252 1230 231 62 54 chr1 273271534 273272018 -8921646 + MLT1D LTR MaLR 8 495 -10 1945 225 75 90 chr1 273272042 273272291 -8921373 - L1M4 LINE L1 -1722 4424 4173 369 0 0 0 chr1 273272291 273272332 -8921332 + (CA)n Simple_repeat Simple_repeat 2 42 0 1945 225 75 90 chr1 273272332 273272345 -8921319 - L1M4 LINE L1 -1973 4173 4161 2297 100 3 0 chr1 273272345 273272636 -8921028 - AluSp SINE Alu -18 295 4 1945 225 75 90 chr1 273272636 273272990 -8920674 - L1M4 LINE L1 -1985 4161 3803 2134 135 137 8 chr1 273272990 273273369 -8920295 + MSTA LTR MaLR 1 428 0 1945 225 75 90 chr1 273273369 273273889 -8919775 - L1M4 LINE L1 -2343 3803 3303 465 274 43 43 chr1 273274064 273274363 -8919301 - L1MCc LINE L1 -6106 317 19 283 313 18 61 chr1 273276162 273276325 -8917339 - MLT1K LTR MaLR -342 246 91 2202 101 3 26 chr1 273277005 273277312 -8916352 - AluSp SINE Alu -13 300 1 22 56 0 0 chr1 273278199 273278235 -8915429 + AT_rich Low_complexity Low_complexity 1 36 0 227 313 0 9 chr1 273279470 273279582 -8914082 - L1MC4 LINE L1 -5 8037 7927 267 79 0 0 chr1 273279601 273279639 -8914025 + (GA)n Simple_repeat Simple_repeat 2 39 0 2297 94 7 0 chr1 273279668 273279975 -8913689 - AluSx SINE Alu -3 309 1 969 243 63 34 chr1 273280232 273280610 -8913054 - L2 LINE L2 -544 2770 2382 282 319 60 0 chr1 273280647 273280763 -8912901 - MIR SINE MIR -70 192 70 304 216 20 29 chr1 273281166 273281268 -8912396 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 341 297 48 41 chr1 273281637 273281782 -8911882 + MIR3 SINE MIR 60 205 -3 449 216 36 0 chr1 273283113 273283224 -8910440 + L1MB4 LINE L1 6066 6180 0 24 32 0 0 chr1 273283810 273283841 -8909823 + AT_rich Low_complexity Low_complexity 1 31 0 266 169 24 60 chr1 273284498 273284581 -8909083 + MLT1K LTR MaLR 509 588 0 183 42 0 0 chr1 273285432 273285456 -8908208 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2195 150 39 40 chr1 273286210 273286284 -8907380 + MER4E LTR ERV1 1 74 -705 2501 57 0 0 chr1 273286284 273286582 -8907082 - AluY SINE Alu -13 298 1 2195 150 39 40 chr1 273286582 273287120 -8906544 + MER4E LTR ERV1 74 779 0 856 266 47 17 chr1 273287120 273287353 -8906311 - MIR SINE MIR -21 241 2 186 103 0 0 chr1 273287698 273287727 -8905937 + (CTTTA)n Simple_repeat Simple_repeat 2 30 0 1352 97 0 19 chr1 273287727 273287933 -8905731 - L1PA8 LINE L1 -24 6148 5947 268 167 0 0 chr1 273288828 273288882 -8904782 + MLT1L LTR MaLR 18 71 -544 509 256 57 65 chr1 273289029 273289291 -8904373 + MLT1J LTR MaLR 234 493 -18 268 317 63 21 chr1 273290697 273290839 -8902825 - MIR SINE MIR -44 218 71 2170 128 0 7 chr1 273290961 273291259 -8902405 + AluSx SINE Alu 1 296 -16 248 86 0 0 chr1 273291589 273291624 -8902040 - MLT2B1 LTR ERVL 0 464 430 228 35 0 0 chr1 273291629 273291658 -8902006 + (CA)n Simple_repeat Simple_repeat 2 30 0 410 180 22 0 chr1 273291664 273291753 -8901911 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1376 215 36 95 chr1 273291769 273292262 -8901402 - MLT2B1 LTR ERVL -56 464 1 412 151 19 57 chr1 273293394 273293500 -8900164 - FLAM_A SINE Alu 0 142 41 1505 218 3 0 chr1 273293522 273293815 -8899849 - AluJb SINE Alu 0 312 19 486 210 185 20 chr1 273293987 273294187 -8899477 - L1MC4a LINE L1 -1944 5864 5632 824 228 26 0 chr1 273294190 273294383 -8899281 + L1MC4 LINE L1 6812 7009 -1033 492 309 34 5 chr1 273294410 273294617 -8899047 - L1MC4a LINE L1 -2214 5594 5382 255 252 63 63 chr1 273294760 273295030 -8898634 - L1MC4a LINE L1 -869 5277 5008 1429 189 25 3 chr1 273295264 273295581 -8898083 - MER33 DNA MER1_type 0 324 1 2560 44 0 19 chr1 273296149 273296466 -8897198 - AluY SINE Alu 0 311 1 1601 188 4 0 chr1 273296652 273296913 -8896751 + AluJo SINE Alu 1 262 -50 423 0 0 0 chr1 273296913 273296960 -8896704 + (CA)n Simple_repeat Simple_repeat 2 48 0 216 95 40 40 chr1 273296960 273297034 -8896630 + (TA)n Simple_repeat Simple_repeat 1 74 0 190 273 0 18 chr1 273297950 273298005 -8895659 - L3 LINE CR1 -155 1422 1369 248 267 128 0 chr1 273298320 273298406 -8895258 + MIR3 SINE MIR 66 162 -46 5139 119 13 14 chr1 273298421 273299205 -8894459 - LTR39 LTR ERV1 0 783 1 1977 128 57 33 chr1 273299817 273300183 -8893481 + THE1C LTR MaLR 1 375 0 1678 171 3 48 chr1 273300362 273300671 -8892993 - AluJo SINE Alu -17 295 1 272 264 169 45 chr1 273300868 273301046 -8892618 - MIR SINE MIR -56 206 7 339 210 0 0 chr1 273302030 273302122 -8891542 - MER41B LTR ERV1 -299 336 112 228 265 29 15 chr1 273302282 273302350 -8891314 + MIR SINE MIR 62 130 -132 427 232 189 0 chr1 273302600 273302764 -8890900 + L1MC/D LINE L1 5612 5806 -2002 735 305 76 74 chr1 273303122 273303651 -8890013 + L1MEc LINE L1 101 627 -5769 753 238 9 14 chr1 273303651 273303861 -8889803 - MER3 DNA MER1_type 0 209 1 735 305 76 74 chr1 273303861 273304360 -8889304 + L1MEc LINE L1 627 1123 -5273 2215 176 80 109 chr1 273304360 273305021 -8888643 + LTR8A LTR ERV1 1 639 -88 2085 124 7 0 chr1 273305021 273305303 -8888361 - AluSc SINE Alu -8 301 18 2215 176 80 109 chr1 273305303 273305390 -8888274 + LTR8A LTR ERV1 639 727 0 735 305 76 74 chr1 273305390 273305452 -8888212 + L1MEc LINE L1 1123 1183 -5213 198 0 0 0 chr1 273305452 273305474 -8888190 + (GA)n Simple_repeat Simple_repeat 2 23 0 735 305 76 74 chr1 273305474 273305751 -8887913 + L1MEc LINE L1 1183 1473 -4923 544 348 44 22 chr1 273306028 273306301 -8887363 - L3 LINE CR1 -280 1297 1019 1033 100 17 17 chr1 273306379 273306559 -8887105 + MER4A LTR ERV1 4 183 -481 879 166 0 26 chr1 273306569 273306720 -8886944 - FRAM SINE Alu -30 146 1 984 153 0 0 chr1 273306735 273306905 -8886759 + (TA)n Simple_repeat Simple_repeat 1 170 0 669 189 0 0 chr1 273307006 273307117 -8886547 - FLAM_C SINE Alu -32 111 1 966 130 6 74 chr1 273307118 273307434 -8886230 + MER4A LTR ERV1 149 423 -241 661 219 18 12 chr1 273307450 273307619 -8886045 + MER4C LTR ERV1 277 446 -19 267 294 33 0 chr1 273307661 273307753 -8885911 - L3 LINE CR1 -625 952 858 2249 106 50 31 chr1 273308244 273308601 -8885063 - THE1B LTR MaLR 0 364 1 11384 93 22 3 chr1 273308628 273310179 -8883485 - THE1B-int LTR MaLR 0 1580 1 2203 123 30 38 chr1 273310179 273310546 -8883118 - THE1B LTR MaLR 0 364 1 331 218 0 0 chr1 273311250 273311337 -8882327 - L1MB4 LINE L1 0 6180 6094 512 250 0 8 chr1 273311343 273311467 -8882197 - L1ME2 LINE L1 -33 6131 6009 1582 196 3 30 chr1 273311690 273311986 -8881678 - AluJo SINE Alu -19 293 6 815 259 34 48 chr1 273312748 273313099 -8880565 + MER41E LTR ERV1 166 511 -1 879 233 31 92 chr1 273315062 273315453 -8878211 + MLT2C1 LTR ERVL 13 379 -18 2202 112 0 3 chr1 273317642 273317937 -8875727 - AluSx SINE Alu -14 298 5 21 0 0 0 chr1 273318387 273318408 -8875256 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 273318719 273318740 -8874924 + AT_rich Low_complexity Low_complexity 1 21 0 2425 219 16 3 chr1 273319449 273320023 -8873641 - L1MC4a LINE L1 -90 7718 7138 2340 225 60 41 chr1 273319992 273320828 -8872836 - L1MC4a LINE L1 -1225 6583 5732 * 400 71 0 0 chr1 273322796 273322852 -8870812 + Alu SINE Alu 1 56 -257 1582 99 5 0 chr1 273322852 273323063 -8870601 + AluSg/x SINE Alu 90 301 -11 408 317 93 19 chr1 273323704 273323909 -8869755 + MER115 DNA AcHobo 234 453 -240 1024 286 39 10 chr1 273324042 273324350 -8869314 - L2 LINE L2 -2858 456 140 2522 184 18 23 chr1 273324353 273324922 -8868742 - L1MB8 LINE L1 -2 6987 6422 1214 248 45 62 chr1 273324923 273324965 -8868699 + LTR55 LTR ERV 1 42 -506 1674 176 58 25 chr1 273324965 273325328 -8868336 - THE1C LTR MaLR 0 375 1 9816 129 14 29 chr1 273325328 273326930 -8866734 - THE1C-int LTR MaLR -1 1579 3 1755 150 60 38 chr1 273326931 273327298 -8866366 - THE1C LTR MaLR 0 375 1 1214 248 45 62 chr1 273327298 273327768 -8865896 + LTR55 LTR ERV 40 507 -41 3338 204 37 59 chr1 273327816 273328842 -8864822 - L1MB8 LINE L1 -567 6428 5376 321 219 27 0 chr1 273328842 273328915 -8864749 - MLT1C LTR MaLR -392 75 1 3338 204 37 59 chr1 273328915 273329292 -8864372 - L1MB8 LINE L1 -1619 5376 4992 885 68 0 75 chr1 273329293 273329426 -8864238 - AluSq/x SINE Alu -179 133 11 633 266 6 6 chr1 273329435 273329612 -8864052 - L1MB8 LINE L1 -1984 4973 4797 3175 264 56 15 chr1 273329619 273331267 -8862397 - L1MB8 LINE L1 -2566 4391 2682 6713 111 22 7 chr1 273331303 273332631 -8861033 - L1MA1 LINE L1 0 6302 4951 2622 209 41 6 chr1 273332598 273333308 -8860356 - L1 LINE L1 -2889 4676 3942 * 840 116 11 1 chr1 273333311 273333451 -8860213 + THE1C LTR MaLR 245 375 0 2258 131 19 14 chr1 273333454 273333882 -8859782 - L1 LINE L1 -4169 3396 2967 * 5792 198 34 18 chr1 273333878 273335128 -8858536 - L1 LINE L1 -6281 1284 16 800 282 59 70 chr1 273335158 273335306 -8858358 - L1MB8 LINE L1 -5808 1047 899 2367 82 0 19 chr1 273335306 273335622 -8858042 - AluY SINE Alu -1 310 1 800 282 59 70 chr1 273335622 273336215 -8857449 - L1MB8 LINE L1 -5956 899 11 325 327 55 0 chr1 273336221 273336289 -8857375 - L2 LINE L2 -3166 148 70 273 57 0 0 chr1 273336289 273336324 -8857340 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 325 327 55 0 chr1 273336324 273336365 -8857299 - L2 LINE L2 -3244 70 33 24 0 0 0 chr1 273337279 273337303 -8856361 + AT_rich Low_complexity Low_complexity 1 24 0 1864 199 79 9 chr1 273337889 273338320 -8855344 - MER65C LTR ERV1 0 461 1 1413 174 185 11 chr1 273338443 273338799 -8854865 + MSTA LTR MaLR 11 428 0 3579 172 11 11 chr1 273339160 273339822 -8853842 - LTR51 LTR ERV1 0 671 10 653 257 11 11 chr1 273340095 273340278 -8853386 - MLT1L LTR MaLR -7 608 426 1130 285 122 18 chr1 273340279 273340794 -8852870 + MLT2F LTR ERVL 3 571 -92 483 263 6 19 chr1 273340805 273340965 -8852699 + MLT2E LTR ERVL 471 628 0 421 167 42 10 chr1 273342095 273342191 -8851473 - MER20 DNA MER1_type -12 207 109 451 217 28 0 chr1 273342370 273342476 -8851188 - MER20 DNA MER1_type -110 109 1 330 267 9 120 chr1 273342690 273342915 -8850749 + MLT1J LTR MaLR 156 355 -156 430 282 47 6 chr1 273343003 273343173 -8850491 - MLT1J2 LTR MaLR -245 205 29 681 186 23 52 chr1 273343183 273343205 -8850459 + MLT1C LTR MaLR 6 27 -440 2178 135 34 8 chr1 273343205 273343560 -8850104 - THE1B LTR MaLR 0 364 1 681 186 23 52 chr1 273343560 273343709 -8849955 + MLT1C LTR MaLR 27 172 -295 873 233 38 17 chr1 273343719 273343959 -8849705 + MLT1C LTR MaLR 223 467 0 1616 183 10 10 chr1 273345245 273345534 -8848130 - AluJo SINE Alu -13 299 11 2346 89 7 3 chr1 273345651 273345953 -8847711 + AluSq SINE Alu 1 303 -10 1659 150 0 0 chr1 273346557 273346797 -8846867 + AluSg SINE Alu 54 293 -17 2175 151 31 54 chr1 273347138 273347582 -8846082 + Tigger2a DNA MER2_type 1 434 0 21 36 0 0 chr1 273348645 273348673 -8844991 + AT_rich Low_complexity Low_complexity 1 28 0 904 213 13 42 chr1 273348967 273349179 -8844485 - MLT1A1 LTR MaLR -3 362 156 2076 126 23 13 chr1 273349179 273349489 -8844175 - AluSq SINE Alu 0 313 1 904 213 13 42 chr1 273349489 273349515 -8844149 - MLT1A1 LTR MaLR -209 156 131 361 167 0 0 chr1 273350094 273350154 -8843510 - MLT1A1 LTR MaLR -261 104 45 582 193 0 0 chr1 273350177 273350286 -8843378 - FRAM SINE Alu -9 167 59 258 120 40 0 chr1 273350291 273350341 -8843323 - MLT1A1 LTR MaLR -313 52 1 964 189 198 55 chr1 273350506 273350850 -8842814 - MSTD LTR MaLR -1 395 3 2147 194 15 5 chr1 273351337 273351729 -8841935 - MSTD LTR MaLR 0 396 1 2308 68 0 0 chr1 273351871 273352196 -8841468 + AluY SINE Alu 1 325 0 225 234 31 0 chr1 273352282 273352346 -8841318 + GA-rich Low_complexity Low_complexity 2 67 0 626 211 49 0 chr1 273352810 273352933 -8840731 + FRAM SINE Alu 1 128 -48 348 24 0 0 chr1 273352945 273352986 -8840678 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 251 288 137 33 chr1 273353185 273353484 -8840180 + LTR16A LTR ERVL 108 437 -13 234 138 92 0 chr1 273353487 273353552 -8840112 + (TTAA)n Simple_repeat Simple_repeat 4 74 0 186 377 52 0 chr1 273353694 273353771 -8839893 - L2 LINE L2 -34 3238 3158 2967 138 14 4 chr1 273354430 273354915 -8838749 - L1PB3 LINE L1 -3 6151 5662 1984 163 30 25 chr1 273355205 273355567 -8838097 - THE1B LTR MaLR 0 364 1 499 294 79 53 chr1 273355579 273356109 -8837555 + ERVL-E LTR ERVL 5208 5751 -13 944 285 149 20 chr1 273356114 273356466 -8837198 + MLT2E LTR ERVL 1 306 -322 1479 188 41 94 chr1 273356466 273356860 -8836804 - MLT1A2 LTR MaLR 0 374 2 944 285 149 20 chr1 273356860 273357051 -8836613 + MLT2E LTR ERVL 306 614 -14 370 205 25 66 chr1 273357721 273357843 -8835821 - MER103 DNA DNA -21 145 29 2142 109 3 0 chr1 273359306 273359612 -8834052 + AluSp SINE Alu 1 307 0 1509 106 5 5 chr1 273360178 273360385 -8833279 - AluSg/x SINE Alu -11 299 93 189 178 0 0 chr1 273360510 273360555 -8833109 + C-rich Low_complexity Low_complexity 1 45 0 216 95 40 40 chr1 273360956 273361030 -8832634 + (TA)n Simple_repeat Simple_repeat 1 74 0 531 0 0 0 chr1 273361030 273361089 -8832575 + (TG)n Simple_repeat Simple_repeat 2 60 0 1601 188 4 0 chr1 273361089 273361350 -8832314 - AluJo SINE Alu -50 262 1 2437 44 0 10 chr1 273361536 273361831 -8831833 + AluY SINE Alu 1 292 -19 209 177 32 48 chr1 273362181 273362243 -8831421 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 237 291 85 43 chr1 273362648 273362789 -8830875 + L2 LINE L2 2887 3033 -239 185 348 0 0 chr1 273363000 273363046 -8830618 + L2 LINE L2 3141 3186 -86 526 279 36 17 chr1 273363274 273363459 -8830205 + MIR SINE MIR 6 192 -63 2249 132 30 28 chr1 273363541 273363904 -8829760 + THE1B LTR MaLR 1 364 0 280 276 66 0 chr1 273363943 273364019 -8829645 - MIR SINE MIR -173 89 9 1278 123 10 5 chr1 273364856 273365059 -8828605 + LTR64 LTR ERVK 1 204 -354 1071 179 9 45 chr1 273365059 273365283 -8828381 - AluJb SINE Alu -4 308 93 421 177 177 0 chr1 273365286 273365382 -8828282 + AluJb SINE Alu 84 196 -116 493 234 24 143 chr1 273365394 273365646 -8828018 - MIR SINE MIR 0 262 41 2154 137 0 6 chr1 273365665 273365979 -8827685 + AluSx SINE Alu 1 312 0 357 229 136 7 chr1 273366025 273366156 -8827508 - MER21B LTR ERV1 -60 803 655 1593 168 202 21 chr1 273366156 273366537 -8827127 - LTR47A LTR ERVL 0 452 3 1100 196 80 49 chr1 273366539 273367039 -8826625 - MER21B LTR ERV1 -202 661 98 390 202 21 32 chr1 273367115 273367209 -8826455 - MER21B LTR ERV1 -769 94 2 315 385 22 6 chr1 273367352 273367534 -8826130 - L2 LINE L2 -674 2640 2456 1106 277 183 42 chr1 273367568 273367604 -8826060 - L2 LINE L2 0 3313 3283 1874 192 71 119 chr1 273367604 273368366 -8825298 + LTR8A LTR ERV1 1 725 -2 1106 277 183 42 chr1 273368366 273369416 -8824248 - L2 LINE L2 -30 3283 2051 624 247 40 45 chr1 273369799 273370022 -8823642 - MIR SINE MIR -6 256 35 211 286 209 0 chr1 273370902 273370993 -8822671 + L2 LINE L2 3202 3311 -2 1952 174 0 22 chr1 273371349 273371705 -8821959 - MER7A DNA MER2_type 0 346 1 1970 190 17 24 chr1 273374012 273374060 -8819604 - MLT2B2 LTR ERVL 0 515 468 2079 149 116 13 chr1 273374060 273374448 -8819216 + MSTA LTR MaLR 1 428 0 1970 190 17 24 chr1 273374448 273374810 -8818854 - MLT2B2 LTR ERVL -47 468 108 323 130 0 0 chr1 273374842 273374890 -8818774 - MLT2B2 LTR ERVL 0 515 468 561 137 11 0 chr1 273374890 273374985 -8818679 + MSTA LTR MaLR 1 96 -332 648 143 0 0 chr1 273375124 273375236 -8818428 - MLT2B2 LTR ERVL -403 112 1 21 0 0 0 chr1 273376321 273376342 -8817322 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 273377296 273377328 -8816336 + AT_rich Low_complexity Low_complexity 1 32 0 576 282 153 39 chr1 273377943 273378329 -8815335 - MLT1J2 LTR MaLR -18 432 3 243 273 0 0 chr1 273381014 273381069 -8812595 + L2 LINE L2 2916 2970 -343 193 356 0 27 chr1 273381125 273381198 -8812466 + L2 LINE L2 3165 3235 -37 675 271 63 18 chr1 273381504 273381725 -8811939 - LTR40a LTR ERVL -5 514 284 492 59 0 0 chr1 273381779 273381847 -8811817 + (TC)n Simple_repeat Simple_repeat 2 69 0 346 127 0 0 chr1 273382936 273382991 -8810673 - LTR40b LTR ERVL -5 457 403 1118 216 74 89 chr1 273382996 273383029 -8810635 - MLT2B1 LTR ERVL 0 520 488 278 85 0 21 chr1 273383029 273383076 -8810588 + (TG)n Simple_repeat Simple_repeat 2 47 0 1118 216 74 89 chr1 273383076 273383478 -8810186 - MLT2B1 LTR ERVL -32 488 92 1949 172 28 50 chr1 273383478 273383943 -8809721 + MSTB2 LTR MaLR 3 457 0 1118 216 74 89 chr1 273383943 273384033 -8809631 - MLT2B1 LTR ERVL -428 92 2 370 274 71 6 chr1 273384056 273384224 -8809440 - L1MC5 LINE L1 -44 7917 7739 228 356 8 8 chr1 273384954 273385086 -8808578 + HAL1b LINE L1 372 503 -845 1141 157 52 13 chr1 273385303 273385533 -8808131 - THE1C LTR MaLR -136 239 1 21 0 0 0 chr1 273385617 273385638 -8808026 + AT_rich Low_complexity Low_complexity 1 21 0 211 118 66 0 chr1 273385645 273385721 -8807943 + (TA)n Simple_repeat Simple_repeat 2 82 0 189 0 0 0 chr1 273385734 273385755 -8807909 + (TC)n Simple_repeat Simple_repeat 2 22 0 201 74 0 0 chr1 273385761 273385788 -8807876 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 430 243 36 14 chr1 273385829 273385969 -8807695 + MER103 DNA DNA 17 159 -7 9842 164 31 7 chr1 273386262 273389427 -8804237 - L1MA2 LINE L1 -4 7719 4499 18356 165 42 13 chr1 273389602 273393361 -8800303 - L1MA2 LINE L1 -3682 3883 13 2056 145 0 3 chr1 273393833 273394129 -8799535 + AluSx SINE Alu 1 295 -17 371 270 38 65 chr1 273395414 273395599 -8798065 - MLT1K LTR MaLR 0 588 409 270 237 155 0 chr1 273395839 273395936 -8797728 + L2 LINE L2 3202 3313 0 199 349 141 24 chr1 273395976 273396182 -8797482 - MIR3 SINE MIR -30 232 2 260 385 41 36 chr1 273396189 273396581 -8797083 + L2 LINE L2 2191 2584 -730 1116 172 39 39 chr1 273397240 273397472 -8796192 + MER46A DNA MER2_type 1 232 -4 1613 206 14 19 chr1 273397483 273397848 -8795816 - MLT1A1 LTR MaLR 0 365 3 2049 172 7 12 chr1 273397852 273398270 -8795394 - L1MB8 LINE L1 -37 6141 5726 2340 194 22 81 chr1 273398279 273398973 -8794691 - L1 LINE L1 -3117 3029 2377 346 297 31 26 chr1 273399606 273399835 -8793829 - L1MB8 LINE L1 -73 6105 5876 303 159 63 0 chr1 273399836 273399899 -8793765 - L1MB8 LINE L1 -1010 5334 5268 1283 135 164 22 chr1 273399912 273400186 -8793478 + MSTA LTR MaLR 1 313 -115 745 146 0 0 chr1 273400186 273400309 -8793355 - L1PA16 LINE L1 -328 5838 5716 632 248 60 33 chr1 273400371 273400670 -8792994 - LTR24B LTR ERV1 -3 573 267 355 169 0 14 chr1 273400800 273400871 -8792793 - LTR24B LTR ERV1 -503 73 4 1413 283 31 21 chr1 273400932 273401329 -8792335 - L1M4 LINE L1 -2285 4672 4265 2340 63 0 7 chr1 273401329 273401637 -8792027 - AluY SINE Alu 0 306 1 1413 283 31 21 chr1 273401637 273401821 -8791843 - L1M4 LINE L1 -2692 4265 4084 2000 186 104 43 chr1 273401823 273401956 -8791708 + LTR49 LTR ERV1 1 124 -471 2819 125 7 2 chr1 273401956 273402388 -8791276 + MER57B LTR ERV1 1 434 0 2000 186 104 43 chr1 273402388 273402813 -8790851 + LTR49 LTR ERV1 124 593 -2 2242 133 0 0 chr1 273402863 273403165 -8790499 - AluSx SINE Alu -10 302 1 650 241 49 0 chr1 273403428 273403590 -8790074 + LTR26 LTR ERV1 223 392 -211 1767 157 68 18 chr1 273403613 273403889 -8789775 + MER84 LTR ERVI 146 444 -63 1684 123 108 7 chr1 273403889 273404166 -8789498 - AluSg SINE Alu -5 305 1 1767 157 68 18 chr1 273404166 273404227 -8789437 + MER84 LTR ERVI 444 500 -7 2448 149 7 21 chr1 273404227 273404656 -8789008 + MER57B-int LTR ERV1 6 428 -4526 327 230 14 0 chr1 273404664 273404738 -8788926 - L2 LINE L2 -5 3308 3234 787 112 0 16 chr1 273404754 273404879 -8788785 - L1PB1 LINE L1 -2 6149 6027 6345 124 9 5 chr1 273404879 273405870 -8787794 + MER57B-int LTR ERV1 423 1417 -3537 1946 79 75 4 chr1 273405870 273406148 -8787516 - AluSq SINE Alu -15 298 1 2045 184 139 47 chr1 273406160 273406824 -8786840 - MER50 LTR ERV1 0 734 10 3579 108 15 0 chr1 273406829 273407365 -8786299 + MER57B-int LTR ERV1 1417 1960 -2994 1518 123 0 69 chr1 273407480 273407740 -8785924 + MER57B-int LTR ERV1 2165 2406 -2548 * 5209 115 21 7 chr1 273407726 273408535 -8785129 + MER84-int LTR ERV1 4132 4951 -3 2419 151 103 11 chr1 273408538 273409002 -8784662 + MER84 LTR ERV1 1 507 0 835 223 14 36 chr1 273409002 273409222 -8784442 + LTR26 LTR ERV1 389 603 0 3113 233 49 26 chr1 273409238 273410114 -8783550 - L1M4b LINE L1 -2911 4046 3165 1624 234 38 78 chr1 273410114 273410752 -8782912 - LTR9 LTR ERV1 0 612 1 3113 233 49 26 chr1 273410752 273411200 -8782464 - L1M4b LINE L1 -3792 3165 2729 1185 222 41 25 chr1 273411247 273411812 -8781852 - L1M4b LINE L1 -5037 1818 1237 342 313 33 22 chr1 273412370 273412552 -8781112 - L1M4b LINE L1 -6304 551 368 245 265 109 54 chr1 273413026 273413173 -8780491 + MIR SINE MIR 79 233 -29 231 184 0 0 chr1 273413274 273413312 -8780352 - tRNA-Thr-ACT tRNA tRNA -35 42 5 461 193 29 0 chr1 273413353 273413493 -8780171 + (TA)n Simple_repeat Simple_repeat 1 144 0 251 198 55 44 chr1 273413493 273413584 -8780080 + L1MC4 LINE L1 6612 6703 -1339 1677 196 93 45 chr1 273413620 273414063 -8779601 - MLT2B1 LTR ERVL -56 464 1 1141 252 82 94 chr1 273414183 273414723 -8778941 - MLT1E LTR MaLR -2 591 8 844 54 54 0 chr1 273415112 273415260 -8778404 + CT-rich Low_complexity Low_complexity 3 158 0 513 32 0 0 chr1 273415260 273415323 -8778341 + (TC)n Simple_repeat Simple_repeat 1 63 0 1725 168 0 34 chr1 273415326 273415647 -8778017 - AluJb SINE Alu -2 310 1 29 0 0 0 chr1 273416035 273416064 -8777600 + AT_rich Low_complexity Low_complexity 1 29 0 237 296 28 28 chr1 273416508 273416579 -8777085 + L2 LINE L2 3129 3199 -73 1280 189 52 94 chr1 273418319 273418700 -8774964 + MLT1A1 LTR MaLR 1 365 0 708 219 0 0 chr1 273418787 273418910 -8774754 + FLAM_A SINE Alu 1 123 -10 218 329 76 0 chr1 273419446 273419525 -8774139 + L2 LINE L2 3227 3311 -2 21 89 0 0 chr1 273420492 273420548 -8773116 + AT_rich Low_complexity Low_complexity 1 56 0 698 268 99 16 chr1 273421335 273421793 -8771871 + MLT1H LTR MaLR 1 533 -16 855 262 24 97 chr1 273422528 273422952 -8770712 - L2 LINE L2 0 3313 2921 1459 204 57 25 chr1 273423491 273423915 -8769749 + MLT1C LTR MaLR 12 495 -10 237 239 183 14 chr1 273424218 273424289 -8769375 - L2 LINE L2 -1 3271 3189 23 33 0 0 chr1 273424325 273424355 -8769309 + AT_rich Low_complexity Low_complexity 1 30 0 1467 33 5 5 chr1 273425131 273425315 -8768349 - L1PA4 LINE L1 0 6155 5972 212 284 52 90 chr1 273425541 273425675 -8767989 + L2 LINE L2 3180 3308 -5 2161 114 3 7 chr1 273426990 273427288 -8766376 - AluSx SINE Alu -15 297 1 36 48 0 36 chr1 273427386 273427469 -8766195 + AT_rich Low_complexity Low_complexity 1 80 0 181 256 23 0 chr1 273428835 273428878 -8764786 - MIR SINE MIR -63 145 102 2528 137 92 0 chr1 273428924 273429177 -8764487 + LTR54 LTR ERV1 1 229 -281 1982 137 0 3 chr1 273429177 273429462 -8764202 - AluSx SINE Alu -24 288 5 2528 137 92 0 chr1 273429462 273429675 -8763989 + LTR54 LTR ERV1 229 510 0 869 168 0 0 chr1 273429769 273429906 -8763758 - FRAM SINE Alu -39 137 1 323 325 35 0 chr1 273430677 273430791 -8762873 + L1M4 LINE L1 4475 4592 -1554 1356 262 73 33 chr1 273430800 273431254 -8762410 - MLT1E LTR MaLR -2 591 120 655 178 0 0 chr1 273431282 273431389 -8762275 - FLAM_C SINE Alu -36 107 1 1847 256 70 48 chr1 273432946 273433623 -8760041 - L1MDb LINE L1 -2760 3646 2935 1976 79 0 53 chr1 273433623 273433926 -8759738 + L1PA8 LINE L1 5886 6172 0 1847 256 70 48 chr1 273433926 273434322 -8759342 - L1MDb LINE L1 -3471 2935 2549 391 251 3 44 chr1 273434367 273434549 -8759115 - L1MDb LINE L1 -5073 1333 1159 8619 19 1 0 chr1 273434724 273435726 -8757938 - L1PA3 LINE L1 -1037 5109 4107 7665 25 0 3 chr1 273435726 273436804 -8756860 + L1PA3 LINE L1 5109 6183 0 318 325 44 81 chr1 273437352 273437547 -8756117 + L1M4 LINE L1 3884 4068 -2078 1974 140 14 0 chr1 273437547 273437833 -8755831 + AluSx SINE Alu 1 290 -22 318 325 44 81 chr1 273437833 273437908 -8755756 + L1M4 LINE L1 4068 4144 -2002 242 320 54 38 chr1 273437926 273438198 -8755466 + L1M4 LINE L1 4215 4481 -1665 2277 78 0 3 chr1 273438198 273438529 -8755135 + AluSc SINE Alu 1 330 0 242 320 54 38 chr1 273438529 273438886 -8754778 + L1M4 LINE L1 4481 4855 -1291 2230 126 0 7 chr1 273439223 273439533 -8754131 + MER1B DNA MER1_type 32 339 0 286 273 40 56 chr1 273439686 273439884 -8753780 + L1M4 LINE L1 5073 5267 -879 1668 142 80 45 chr1 273440167 273440519 -8753145 - THE1B LTR MaLR 0 364 1 8727 143 79 9 chr1 273440519 273441993 -8751671 - THE1C-int LTR MaLR 0 1580 3 1717 128 68 86 chr1 273441995 273442377 -8751287 - THE1C LTR MaLR 0 375 1 889 169 47 6 chr1 273442529 273442701 -8750963 + MER58A DNA MER1_type 42 220 -4 470 304 170 9 chr1 273442809 273443033 -8750631 - MIR SINE MIR 0 262 3 298 336 63 0 chr1 273443354 273443497 -8750167 - MIR3 SINE MIR -14 194 43 187 311 89 0 chr1 273443965 273444055 -8749609 - L3 LINE CR1 -1105 472 375 2455 159 21 12 chr1 273444296 273444724 -8748940 - MSTB1 LTR MaLR 0 432 1 361 304 88 41 chr1 273445199 273445370 -8748294 + MIR3 SINE MIR 23 201 -7 1130 199 106 42 chr1 273445755 273446086 -8747578 + MLT1D LTR MaLR 1 352 -153 609 277 41 29 chr1 273446117 273446359 -8747305 + MLT1D LTR MaLR 260 504 -1 323 248 14 106 chr1 273446875 273447016 -8746648 + MLT1J2 LTR MaLR 1 128 -322 340 327 57 25 chr1 273447110 273447269 -8746395 + MLT1J2 LTR MaLR 264 427 -23 2230 125 3 0 chr1 273448137 273448448 -8745216 - AluSx SINE Alu 0 312 1 322 361 68 51 chr1 273448943 273449239 -8744425 + L2 LINE L2 2972 3272 0 224 288 8 0 chr1 273449335 273449453 -8744211 + (TA)n Simple_repeat Simple_repeat 1 119 0 1873 132 53 28 chr1 273450582 273450901 -8742763 - MER7A DNA MER2_type 0 346 22 1293 245 55 83 chr1 273450924 273451138 -8742526 - MER54A LTR ERVL -119 782 564 2559 55 0 0 chr1 273451138 273451447 -8742217 + AluY SINE Alu 1 309 -2 1293 245 55 83 chr1 273451447 273451702 -8741962 - MER54A LTR ERVL -337 564 326 328 214 0 0 chr1 273451847 273451903 -8741761 - MER7A DNA MER2_type -292 56 1 786 257 67 21 chr1 273451959 273452290 -8741374 - L1M4 LINE L1 -1979 4167 3822 183 80 0 0 chr1 273452368 273452393 -8741271 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 27 29 0 0 chr1 273452541 273452575 -8741089 + AT_rich Low_complexity Low_complexity 1 34 0 1062 352 78 43 chr1 273452760 273453866 -8739798 - L2 LINE L2 -183 3089 1944 247 286 13 13 chr1 273453875 273453952 -8739712 - MIR SINE MIR -9 253 177 312 351 24 18 chr1 273454013 273454178 -8739486 - L2 LINE L2 -1395 1919 1754 201 74 0 0 chr1 273454341 273454368 -8739296 + (TGG)n Simple_repeat Simple_repeat 3 29 0 353 39 20 0 chr1 273454368 273454419 -8739245 + (TG)n Simple_repeat Simple_repeat 2 53 0 347 227 52 21 chr1 273454782 273454879 -8738785 + MER5A DNA MER1_type 13 112 -77 425 265 58 61 chr1 273455448 273455737 -8737927 + L1ME3A LINE L1 2666 2956 -3190 2340 70 0 0 chr1 273455737 273456044 -8737620 + AluY SINE Alu 1 307 0 425 265 58 61 chr1 273456044 273456131 -8737533 + L1ME3A LINE L1 2956 3042 -3104 364 274 63 58 chr1 273456163 273456467 -8737197 + L1ME3A LINE L1 4226 4534 -1612 666 95 0 0 chr1 273456467 273456562 -8737102 + (TA)n Simple_repeat Simple_repeat 2 96 0 364 274 63 58 chr1 273456562 273456622 -8737042 + L1ME3A LINE L1 4534 4592 -1554 244 287 11 0 chr1 273456853 273456940 -8736724 + L1ME3A LINE L1 4932 5019 -1127 792 329 47 5 chr1 273457174 273457706 -8735958 + L1ME3A LINE L1 5293 5848 -322 9753 187 52 5 chr1 273457730 273459880 -8733784 + L1 LINE L1 2599 4849 -1297 738 224 58 6 chr1 273459880 273460054 -8733610 + MER58B DNA MER1_type 159 341 0 1005 171 12 0 chr1 273460475 273460639 -8733025 - AluJb SINE Alu -14 298 133 2237 100 3 10 chr1 273460704 273461015 -8732649 - AluSq SINE Alu -4 309 1 633 193 22 7 chr1 273461631 273461766 -8731898 - MER69 DNA AcHobo -2387 139 3 293 204 93 65 chr1 273461926 273462034 -8731630 - L2 LINE L2 -3 3310 3200 2114 63 15 4 chr1 273462115 273462386 -8731278 + AluY SINE Alu 36 309 -2 371 299 78 73 chr1 273463147 273463545 -8730119 + L2 LINE L2 2077 2476 -838 48 77 0 0 chr1 273463570 273463674 -8729990 + AT_rich Low_complexity Low_complexity 1 104 0 313 227 21 52 chr1 273463675 273463772 -8729892 + L1MC4 LINE L1 6619 6712 -1330 418 382 94 8 chr1 273463773 273464193 -8729471 + L2 LINE L2 2569 3021 -251 603 228 25 25 chr1 273464353 273464555 -8729109 - LTR55 LTR ERV -106 442 241 992 190 4 35 chr1 273464607 273464839 -8728825 - LTR55 LTR ERV -323 225 1 196 400 36 24 chr1 273464863 273465028 -8728636 + L2 LINE L2 3104 3270 -2 3087 126 11 6 chr1 273465941 273466410 -8727254 - MER1A DNA MER1_type 0 529 59 24 0 0 0 chr1 273466621 273466645 -8727019 + AT_rich Low_complexity Low_complexity 1 24 0 2207 133 33 22 chr1 273467606 273467966 -8725698 - THE1B LTR MaLR 0 364 1 270 0 0 0 chr1 273468010 273468040 -8725624 + (TC)n Simple_repeat Simple_repeat 2 31 0 261 0 0 0 chr1 273468039 273468068 -8725596 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1261 257 68 28 chr1 273468094 273468561 -8725103 + MER77 LTR ERV1 53 538 -67 1686 166 47 7 chr1 273468767 273469063 -8724601 - AluJo SINE Alu -4 308 1 275 288 65 14 chr1 273469616 273469755 -8723909 + MLT1I LTR MaLR 15 160 -249 238 350 17 25 chr1 273469816 273469936 -8723728 + MIR SINE MIR 142 260 -2 21 0 0 0 chr1 273470060 273470081 -8723583 + AT_rich Low_complexity Low_complexity 1 21 0 2418 87 0 13 chr1 273470767 273471078 -8722586 - AluSx SINE Alu -4 308 2 184 188 0 0 chr1 273471277 273471309 -8722355 + L2 LINE L2 3222 3253 -19 4114 195 121 37 chr1 273471372 273472680 -8720984 + Charlie1a DNA MER1_type 37 1454 -1 234 367 67 27 chr1 273472912 273473062 -8720602 + L2 LINE L2 3117 3272 0 1719 259 19 17 chr1 273474904 273475433 -8718231 + MER74B LTR ERVL 2 531 -91 336 305 96 10 chr1 273475439 273475731 -8717933 + L1MEc LINE L1 1051 1367 -5029 1666 219 80 105 chr1 273475849 273476613 -8717051 - LTR1B LTR ERV1 -81 745 1 2378 205 40 40 chr1 273476783 273477384 -8716280 + MLT1E2 LTR MaLR 18 618 -8 1996 163 23 28 chr1 273478016 273478414 -8715250 - Tigger2a DNA MER2_type -38 396 1 2204 86 17 3 chr1 273478538 273478828 -8714836 + AluSx SINE Alu 1 294 -18 360 304 87 11 chr1 273478840 273479195 -8714469 + L1MDa LINE L1 1486 1867 -4673 * 1664 241 45 7 chr1 273479184 273479757 -8713907 + L1MDa LINE L1 2192 2786 -3935 2166 187 112 15 chr1 273479765 273480283 -8713381 + MER54A LTR ERVL 1 568 -333 360 0 0 0 chr1 273480283 273480323 -8713341 + (T)n Simple_repeat Simple_repeat 1 40 0 256 300 36 18 chr1 273480969 273481079 -8712585 - MLT1K LTR MaLR -324 264 153 371 300 107 76 chr1 273481582 273481872 -8711792 + L2 LINE L2 3009 3307 -6 239 335 69 37 chr1 273483082 273483270 -8710394 - MIR SINE MIR -57 205 12 535 195 86 17 chr1 273483669 273483843 -8709821 - MER53 DNA DNA -3 186 1 265 133 70 16 chr1 273485208 273485336 -8708328 + (TA)n Simple_repeat Simple_repeat 2 136 0 989 202 25 108 chr1 273485385 273485746 -8707918 - MLT2D LTR ERVL -83 331 1 4555 217 35 43 chr1 273486180 273487296 -8706368 + MLT1A1-int LTR MaLR 629 1735 0 955 244 62 73 chr1 273487296 273487595 -8706069 + MLT1A1 LTR MaLR 1 298 -67 2080 114 4 0 chr1 273487595 273487899 -8705765 - AluSg SINE Alu 0 305 1 955 244 62 73 chr1 273487899 273487967 -8705697 + MLT1A1 LTR MaLR 298 365 0 1892 114 0 57 chr1 273488790 273489089 -8704575 + AluSg SINE Alu 1 282 -28 186 71 0 0 chr1 273489094 273489122 -8704542 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 2768 205 91 37 chr1 273489142 273489441 -8704223 - MER69 DNA AcHobo -12 2514 2233 2170 118 0 3 chr1 273489441 273489746 -8703918 + AluSx SINE Alu 2 305 -7 2768 205 91 37 chr1 273489746 273490372 -8703292 - MER69 DNA AcHobo -293 2233 1642 2147 98 0 55 chr1 273490372 273490700 -8702964 - AluSg SINE Alu 0 310 1 2768 205 91 37 chr1 273490700 273490716 -8702948 - MER69 DNA AcHobo -884 1642 1628 2181 77 0 24 chr1 273490716 273491027 -8702637 + AluY SINE Alu 4 307 0 2768 205 91 37 chr1 273491027 273491085 -8702579 - MER69 DNA AcHobo -898 1628 1458 834 275 27 16 chr1 273491095 273491353 -8702311 - MER69 DNA AcHobo -2264 262 2 2540 189 29 16 chr1 273491565 273492715 -8700949 + L1MB4 LINE L1 4968 6179 -1 25 83 0 0 chr1 273493358 273493418 -8700246 + AT_rich Low_complexity Low_complexity 1 60 0 616 337 62 10 chr1 273493674 273494060 -8699604 + L1PA12 LINE L1 10 415 -7166 363 226 26 69 chr1 273494289 273494408 -8699256 - MSTA LTR MaLR 0 428 319 2724 178 11 19 chr1 273494408 273494682 -8698982 + L1 LINE L1 3580 3855 -2291 2204 117 17 0 chr1 273494682 273494973 -8698691 + AluSq SINE Alu 1 296 -17 2724 178 11 19 chr1 273494973 273495265 -8698399 + L1 LINE L1 3855 4141 -2005 1599 183 95 101 chr1 273495533 273495718 -8697946 - MER68 LTR ERV1 0 562 377 2336 108 0 0 chr1 273495718 273496025 -8697639 - AluSc SINE Alu -2 307 1 1599 183 95 101 chr1 273496025 273496376 -8697288 - MER68 LTR ERV1 -185 377 29 233 244 31 28 chr1 273496694 273496854 -8696810 + L2 LINE L2 3103 3311 -2 2305 99 0 16 chr1 273497166 273497478 -8696186 - AluSg SINE Alu -1 309 3 221 384 12 0 chr1 273497558 273497644 -8696020 + L2 LINE L2 3186 3272 0 204 214 0 0 chr1 273497819 273497875 -8695789 + (CTA)n Simple_repeat Simple_repeat 2 57 0 415 296 79 105 chr1 273497877 273498144 -8695520 - MIR SINE MIR -2 260 1 21 57 0 0 chr1 273498910 273498945 -8694719 + AT_rich Low_complexity Low_complexity 1 35 0 2305 101 3 0 chr1 273499547 273499855 -8693809 - AluSx SINE Alu -1 311 3 233 254 17 0 chr1 273500460 273500519 -8693145 - L2 LINE L2 0 3313 3254 378 0 0 0 chr1 273500629 273500671 -8692993 + (TA)n Simple_repeat Simple_repeat 2 43 0 399 95 0 0 chr1 273500954 273501017 -8692647 + L1MA7 LINE L1 6229 6291 0 2957 122 62 14 chr1 273501906 273502388 -8691276 - LTR10B LTR ERV1 0 505 1 2510 66 0 0 chr1 273502411 273502715 -8690949 + AluY SINE Alu 1 304 -7 861 146 0 19 chr1 273502999 273503157 -8690507 - LTR7 LTR ERV1 0 450 296 812 130 8 18 chr1 273503387 273503555 -8690109 - LTR7 LTR ERV1 -232 218 1 637 251 89 33 chr1 273503851 273504028 -8689636 - MER69 DNA AcHobo 0 2526 2360 2405 84 0 0 chr1 273504028 273504325 -8689339 + AluY SINE Alu 1 297 -14 637 251 89 33 chr1 273504325 273504598 -8689066 - MER69 DNA AcHobo -166 2360 2051 2374 78 3 0 chr1 273504611 273504906 -8688758 + AluSp SINE Alu 1 296 -17 1976 250 113 17 chr1 273505052 273505271 -8688393 - L1MCc LINE L1 -4447 2494 2298 1591 185 14 11 chr1 273505271 273505557 -8688107 + AluJo SINE Alu 1 287 -25 1976 250 113 17 chr1 273505557 273506490 -8687174 - L1MCc LINE L1 -4643 2298 1214 266 182 50 61 chr1 273506662 273506761 -8686903 + L1MB4 LINE L1 5961 6057 -123 818 134 14 0 chr1 273506788 273506930 -8686734 + L1MB4 LINE L1 6036 6179 -1 809 260 56 93 chr1 273507181 273507815 -8685849 - MER69 DNA AcHobo -1141 1385 713 2312 107 0 0 chr1 273507815 273508113 -8685551 - AluSg SINE Alu -12 298 1 809 260 56 93 chr1 273508113 273508339 -8685325 - MER69 DNA AcHobo -1813 713 480 1085 283 39 11 chr1 273508367 273508728 -8684936 - MER69 DNA AcHobo -2154 372 2 5795 256 42 32 chr1 273509217 273512291 -8681373 - L1 LINE L1 -3584 2766 6 25 65 0 0 chr1 273512304 273512350 -8681314 + AT_rich Low_complexity Low_complexity 1 46 0 2478 68 0 0 chr1 273513200 273513507 -8680157 - AluY SINE Alu -4 307 1 25 65 0 0 chr1 273515816 273515862 -8677802 + AT_rich Low_complexity Low_complexity 1 46 0 684 258 30 52 chr1 273516145 273516412 -8677252 - MIR SINE MIR 0 262 2 1382 275 54 12 chr1 273516957 273517437 -8676227 + MLT1H1 LTR MaLR 54 553 -2 518 363 37 45 chr1 273518115 273518711 -8674953 - L2 LINE L2 -67 3246 2652 478 228 22 0 chr1 273518746 273518838 -8674826 - MER5A DNA MER1_type -84 105 12 26 0 0 0 chr1 273519693 273519719 -8673945 + AT_rich Low_complexity Low_complexity 1 26 0 2512 49 0 0 chr1 273520353 273520657 -8673007 - AluY SINE Alu -7 304 1 2935 250 55 55 chr1 273520947 273521138 -8672526 + L1MC4 LINE L1 6462 6652 -1390 2184 101 3 0 chr1 273521138 273521424 -8672240 - AluSp SINE Alu -26 287 1 2935 250 55 55 chr1 273521424 273522420 -8671244 + L1MC4 LINE L1 6652 7652 -390 2163 105 0 41 chr1 273522420 273522735 -8670929 - AluSx SINE Alu -10 302 1 2935 250 55 55 chr1 273522735 273522865 -8670799 + L1MC4 LINE L1 7651 7780 -262 465 128 0 0 chr1 273522934 273523012 -8670652 + L1PA16 LINE L1 6089 6166 0 339 289 10 10 chr1 273523455 273523559 -8670105 - MIR3 SINE MIR -13 195 92 8940 144 19 7 chr1 273523561 273525092 -8668572 + Tigger1 DNA MER2_type 1 1550 -868 279 167 0 131 chr1 273525092 273525176 -8668488 + AluJo SINE Alu 78 150 -152 * 5144 125 14 20 chr1 273525173 273526050 -8667614 + Tigger1 DNA MER2_type 1547 2417 -1 191 232 36 18 chr1 273526059 273526115 -8667549 - MIR SINE MIR -132 76 20 444 248 30 0 chr1 273526175 273526276 -8667388 + L2 LINE L2 3195 3298 -15 327 257 0 0 chr1 273526290 273526364 -8667300 - MLT1L LTR MaLR -394 221 148 940 225 0 0 chr1 273526365 273526538 -8667126 + MER5A DNA MER1_type 2 174 -15 325 300 40 0 chr1 273526892 273526992 -8666672 + MIR3 SINE MIR 90 193 -15 1246 171 31 40 chr1 273528000 273528215 -8665449 + AluJo SINE Alu 87 301 -11 186 43 0 0 chr1 273528215 273528238 -8665426 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1246 171 31 40 chr1 273528238 273528250 -8665414 + AluJo SINE Alu 301 312 0 256 291 23 0 chr1 273530042 273530128 -8663536 - LTR33 LTR ERVL -53 468 381 2107 130 50 44 chr1 273530446 273530674 -8662990 - THE1B LTR MaLR 0 364 131 1872 158 0 7 chr1 273530674 273530992 -8662672 + AluSx SINE Alu 1 316 0 2107 130 50 44 chr1 273530992 273531124 -8662540 - THE1B LTR MaLR -233 131 1 1942 137 137 39 chr1 273531208 273531596 -8662068 + MSTB LTR MaLR 1 426 0 2052 177 85 7 chr1 273531597 273532033 -8661631 + MSTB-int LTR MaLR 2 471 -1180 3489 181 101 1 chr1 273532062 273532757 -8660907 + MSTB-int LTR MaLR 851 1614 -37 2051 166 62 52 chr1 273532839 273533261 -8660403 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr1 273534068 273534092 -8659572 + AT_rich Low_complexity Low_complexity 1 24 0 2685 189 46 13 chr1 273534779 273535391 -8658273 + L1MB4 LINE L1 5548 6179 -1 1283 209 133 54 chr1 273536029 273536494 -8657170 + MLT1D LTR MaLR 1 502 -3 912 226 24 0 chr1 273536591 273536799 -8656865 - MER20 DNA MER1_type -1 218 6 2207 119 0 0 chr1 273537204 273537498 -8656166 - AluSx SINE Alu -18 294 1 2682 212 14 2 chr1 273538048 273538605 -8655059 - LTR31 LTR ERV1 -15 604 41 2359 87 0 0 chr1 273538805 273539103 -8654561 + AluY SINE Alu 1 298 -13 1280 229 101 24 chr1 273539136 273539473 -8654191 - MLT1A1 LTR MaLR -2 363 1 279 319 51 14 chr1 273540672 273540810 -8652854 + MIR3 SINE MIR 1 143 -65 237 320 40 13 chr1 273540867 273540942 -8652722 - MIR SINE MIR -112 96 20 550 115 0 0 chr1 273540953 273541031 -8652633 + MLT1D LTR MaLR 1 78 -427 254 29 29 0 chr1 273541073 273541108 -8652556 + (TC)n Simple_repeat Simple_repeat 1 36 0 208 135 19 19 chr1 273541135 273541187 -8652477 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1468 228 40 28 chr1 273541189 273541492 -8652172 - MLT2B2 LTR ERVL -52 502 191 201 74 0 0 chr1 273541492 273541519 -8652145 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1468 228 40 28 chr1 273541519 273541713 -8651951 - MLT2B2 LTR ERVL -363 191 1 * 1985 194 20 25 chr1 273541713 273542146 -8651518 + MLT1D LTR MaLR 75 505 0 22 35 0 0 chr1 273542819 273542848 -8650816 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr1 273542896 273542935 -8650729 + AT_rich Low_complexity Low_complexity 1 39 0 412 351 83 10 chr1 273543109 273543314 -8650350 + MIR SINE MIR 29 248 -14 408 323 71 25 chr1 273543633 273543915 -8649749 + L2 LINE L2 1216 1510 -1804 456 295 51 71 chr1 273544296 273544550 -8649114 + L2 LINE L2 1506 1754 -1560 2751 87 14 3 chr1 273544951 273545319 -8648345 + THE1C LTR MaLR 1 372 -3 238 289 12 0 chr1 273545880 273545963 -8647701 + (TA)n Simple_repeat Simple_repeat 2 85 0 253 319 60 43 chr1 273546680 273546796 -8646868 - L2 LINE L2 -2 3270 3153 730 169 14 35 chr1 273546796 273546938 -8646726 + AluJo SINE Alu 30 168 -144 1641 186 70 40 chr1 273546940 273547264 -8646400 + MER61D LTR ERV1 1 400 -101 2176 116 0 22 chr1 273547264 273547582 -8646082 + AluY SINE Alu 1 311 0 1641 186 70 40 chr1 273547582 273547686 -8645978 + MER61D LTR ERV1 400 499 -2 685 202 0 0 chr1 273547691 273547810 -8645854 + AluJo SINE Alu 170 288 -24 286 336 45 18 chr1 273547916 273548026 -8645638 - L2 LINE L2 -181 3091 2979 322 324 122 44 chr1 273548096 273548482 -8645182 - L2 LINE L2 -559 2755 2340 285 344 23 0 chr1 273548897 273549025 -8644639 + MER94 DNA DNA 4 134 0 2062 124 0 0 chr1 273549280 273549588 -8644076 + AluSx SINE Alu 1 308 0 254 95 24 0 chr1 273551806 273551848 -8641816 + (TA)n Simple_repeat Simple_repeat 2 44 0 1318 126 5 0 chr1 273552301 273552491 -8641173 - AluSx SINE Alu 0 312 122 207 0 0 0 chr1 273552491 273552514 -8641150 + (TG)n Simple_repeat Simple_repeat 2 24 0 392 157 60 0 chr1 273552569 273552652 -8641012 - U6 snRNA snRNA 0 107 20 2658 106 20 36 chr1 273552652 273553096 -8640568 - LTR3b LTR ERVK 0 437 1 770 196 5 11 chr1 273553169 273553358 -8640306 - L1 LINE L1 -3222 2924 2737 4579 102 50 52 chr1 273553365 273554269 -8639395 - SVA Other Other -955 1386 329 1294 180 35 7 chr1 273554269 273554552 -8639112 + AluSx SINE Alu 3 293 -19 1094 75 0 0 chr1 273554567 273554700 -8638964 - AluSx SINE Alu -179 133 1 1291 230 34 34 chr1 273554715 273555124 -8638540 - L1MA9 LINE L1 -38 6274 5866 1299 182 91 23 chr1 273555847 273556145 -8637519 + AluJo SINE Alu 1 316 0 25 31 0 0 chr1 273556421 273556453 -8637211 + AT_rich Low_complexity Low_complexity 1 32 0 193 330 8 42 chr1 273556534 273556652 -8637012 + L2 LINE L2 2372 2485 -829 25 0 0 0 chr1 273557832 273557857 -8635807 + AT_rich Low_complexity Low_complexity 1 25 0 691 236 27 62 chr1 273557868 273558093 -8635571 + MER58A DNA MER1_type 6 222 -2 231 367 93 49 chr1 273558230 273558456 -8635208 + L2 LINE L2 3016 3251 -21 1625 191 0 40 chr1 273558659 273558962 -8634702 - AluJo SINE Alu -21 291 1 180 152 0 0 chr1 273559253 273559286 -8634378 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1882 199 31 98 chr1 273559588 273560258 -8633406 - MLT1E2 LTR MaLR 0 626 2 665 275 156 15 chr1 273560300 273560569 -8633095 - MLT1I LTR MaLR 0 409 103 362 138 0 0 chr1 273561711 273561769 -8631895 - AluS SINE Alu -245 58 1 2216 107 3 3 chr1 273562175 273562475 -8631189 - AluSx SINE Alu -12 300 1 199 263 53 0 chr1 273562882 273562939 -8630725 - L2 LINE L2 0 3313 3254 30 0 0 61 chr1 273562941 273562969 -8630695 + AT_rich Low_complexity Low_complexity 1 26 -20 1818 110 106 0 chr1 273562969 273563233 -8630431 + AluSx SINE Alu 1 292 -20 30 0 0 61 chr1 273563233 273563253 -8630411 + AT_rich Low_complexity Low_complexity 26 46 0 448 342 162 25 chr1 273563580 273563975 -8629689 - L2 LINE L2 -501 2813 2365 29 0 0 0 chr1 273564087 273564116 -8629548 + AT_rich Low_complexity Low_complexity 1 29 0 267 250 0 0 chr1 273564386 273564450 -8629214 - L1MD3 LINE L1 -792 7203 7140 286 29 0 0 chr1 273564450 273564484 -8629180 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 2206 81 0 3 chr1 273564484 273564768 -8628896 - AluY SINE Alu -1 316 1 262 206 0 16 chr1 273564799 273564862 -8628802 + CT-rich Low_complexity Low_complexity 2 63 0 * 669 258 98 16 chr1 273564850 273565603 -8628061 - L1MC4a LINE L1 -945 6863 6070 894 179 0 7 chr1 273565658 273565798 -8627866 - FRAM SINE Alu -38 138 1 990 242 84 45 chr1 273565801 273566219 -8627445 - L1ME1 LINE L1 -152 6014 5622 * 1203 220 43 58 chr1 273566214 273566659 -8627005 - L1ME1 LINE L1 -1883 4263 3826 256 332 92 48 chr1 273567182 273567411 -8626253 + L2 LINE L2 2808 3046 -226 218 275 29 14 chr1 273567607 273567676 -8625988 + L2 LINE L2 3199 3268 -4 2839 158 61 11 chr1 273568689 273569246 -8624418 - L1MB3 LINE L1 -7 6176 5592 1207 111 0 0 chr1 273569246 273569417 -8624247 - AluY SINE Alu 0 311 141 8051 219 33 41 chr1 273569417 273571356 -8622308 - L1MB3 LINE L1 -589 5594 3682 1989 103 62 3 chr1 273571356 273571646 -8622018 - AluSc SINE Alu -2 307 1 8051 219 33 41 chr1 273571646 273572379 -8621285 - L1MB3 LINE L1 -2501 3682 2945 336 250 31 0 chr1 273572396 273572492 -8621172 + MER58B DNA MER1_type 237 335 -6 1976 146 33 17 chr1 273573346 273573708 -8619956 - THE1C LTR MaLR 0 375 8 2506 60 0 32 chr1 273574585 273574901 -8618763 + AluY SINE Alu 1 306 -5 195 355 0 0 chr1 273574941 273575003 -8618661 - L3 LINE CR1 -1 1576 1515 227 250 100 12 chr1 273575365 273575445 -8618219 - L3 LINE CR1 -65 1512 1426 26 50 0 0 chr1 273575679 273575719 -8617945 + AT_rich Low_complexity Low_complexity 1 40 0 1662 118 40 15 chr1 273575986 273576258 -8617406 - AluSx SINE Alu 0 312 34 193 302 126 25 chr1 273576426 273576585 -8617079 + L3 LINE CR1 1145 1319 -258 33 80 0 0 chr1 273578457 273578532 -8615132 + AT_rich Low_complexity Low_complexity 1 75 0 5217 216 23 11 chr1 273579359 273581364 -8612300 - L1PA15 LINE L1 -7 6158 4131 4033 79 106 141 chr1 273581364 273582220 -8611444 + LTR12 LTR ERV1 1 826 0 5217 216 23 11 chr1 273582220 273582282 -8611382 - L1PA15 LINE L1 -2034 4131 4071 413 174 0 0 chr1 273582300 273582369 -8611295 + Tigger2 DNA MER2_type 1 69 -2649 * 1635 111 33 26 chr1 273582367 273582637 -8611027 + Tigger2 DNA MER2_type 2280 2551 -167 2284 102 0 0 chr1 273582665 273582959 -8610705 + AluSg SINE Alu 1 294 -16 848 196 98 0 chr1 273582967 273583140 -8610524 + Tigger2 DNA MER2_type 2526 2715 -3 1780 212 21 11 chr1 273583208 273583580 -8610084 - MLT1B LTR MaLR 0 390 15 601 203 8 23 chr1 273584546 273584679 -8608985 + FLAM_A SINE Alu 1 131 -2 2015 124 3 19 chr1 273586151 273586465 -8607199 - AluSx SINE Alu -3 309 1 234 318 24 12 chr1 273586498 273586583 -8607081 + MIR3 SINE MIR 95 180 -28 1494 173 35 32 chr1 273586725 273587072 -8606592 - L1MB8 LINE L1 -17 6161 5814 392 157 351 45 chr1 273587072 273587206 -8606458 + L1MB8 LINE L1 5632 5806 -372 30 59 0 0 chr1 273587214 273587265 -8606399 + AT_rich Low_complexity Low_complexity 1 51 0 1898 225 13 15 chr1 273587366 273587943 -8605721 - L1MB8 LINE L1 -465 5713 5139 225 132 0 0 chr1 273587943 273587981 -8605683 + (CA)n Simple_repeat Simple_repeat 2 39 0 4428 199 109 118 chr1 273588293 273588347 -8605317 - L1MC3 LINE L1 -13 8400 8347 2264 92 0 3 chr1 273588347 273588651 -8605013 - AluSg SINE Alu 0 303 1 2005 130 7 10 chr1 273588651 273588981 -8604683 - AluSx SINE Alu 0 312 1 4428 199 109 118 chr1 273588981 273589035 -8604629 - L1MC3 LINE L1 -65 8348 8295 1460 151 31 86 chr1 273589035 273589359 -8604305 + AluJo SINE Alu 1 306 -6 4428 199 109 118 chr1 273589359 273590301 -8603363 - L1MC3 LINE L1 -118 8295 7346 2279 95 7 0 chr1 273590301 273590596 -8603068 + AluSx SINE Alu 3 299 -13 4428 199 109 118 chr1 273590596 273590677 -8602987 - L1MC3 LINE L1 -1067 7346 7266 1496 144 35 133 chr1 273590677 273591045 -8602619 + MER7A DNA MER2_type 17 346 0 4428 199 109 118 chr1 273591045 273591972 -8601692 - L1MC3 LINE L1 -1147 7266 6332 2308 101 0 0 chr1 273591972 273592269 -8601395 + AluSg SINE Alu 3 299 -11 4428 199 109 118 chr1 273592269 273592482 -8601182 - L1MC3 LINE L1 -2081 6332 6119 2476 67 0 13 chr1 273592482 273592795 -8600869 - AluSc SINE Alu 0 309 1 4428 199 109 118 chr1 273592795 273593847 -8599817 - L1MC3 LINE L1 -2294 6119 4719 180 0 0 0 chr1 273593868 273593888 -8599776 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3681 257 59 43 chr1 273593949 273595558 -8598106 - L1MC3 LINE L1 -2023 4541 2960 243 0 0 0 chr1 273595558 273595585 -8598079 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1759 140 4 0 chr1 273595585 273595835 -8597829 - AluSx SINE Alu -27 285 35 3681 257 59 43 chr1 273595835 273595876 -8597788 - L1MC3 LINE L1 -3603 2961 2863 560 230 59 29 chr1 273595883 273596173 -8597491 - L1MC3 LINE L1 -4545 2019 1626 * 1635 247 24 50 chr1 273596164 273596515 -8597149 - L1MC3 LINE L1 -4851 1194 1097 2493 109 17 8 chr1 273596515 273596873 -8596791 - THE1B LTR MaLR -2 362 2 1635 247 24 50 chr1 273596873 273597388 -8596276 - L1MC3 LINE L1 -4948 1097 570 682 288 94 28 chr1 273597502 273597790 -8595874 - L1MC3 LINE L1 -5482 563 257 384 140 0 53 chr1 273597791 273597905 -8595759 + (CACTC)n Simple_repeat Simple_repeat 4 111 0 600 298 10 29 chr1 273597916 273598124 -8595540 - L1MC3 LINE L1 -5786 259 56 204 274 0 49 chr1 273598243 273598345 -8595319 + GA-rich Low_complexity Low_complexity 2 98 0 25 31 0 0 chr1 273598544 273598576 -8595088 + AT_rich Low_complexity Low_complexity 1 32 0 1495 272 41 74 chr1 273598591 273599197 -8594467 + MLT1E LTR MaLR 3 588 -5 264 272 98 11 chr1 273599796 273599888 -8593776 + MIR SINE MIR 97 196 -66 574 162 9 0 chr1 273599898 273600003 -8593661 - L1MA7 LINE L1 -416 5875 5770 1559 194 22 3 chr1 273600040 273600360 -8593304 - L1MA7 LINE L1 -488 5803 5478 2100 159 9 24 chr1 273600361 273600782 -8592882 + L1MA7 LINE L1 5875 6289 -2 306 0 0 0 chr1 273601083 273601117 -8592547 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr1 273601122 273601144 -8592520 + AT_rich Low_complexity Low_complexity 1 22 0 235 277 48 17 chr1 273601899 273601989 -8591675 - MIR SINE MIR -56 152 84 1675 181 7 3 chr1 273602354 273602642 -8591022 + AluJb SINE Alu 3 291 -21 290 294 33 33 chr1 273602725 273602878 -8590786 + MIR SINE MIR 110 262 0 2256 223 35 4 chr1 273602995 273603537 -8590127 - MER89 LTR ERV1 0 559 1 249 388 25 12 chr1 273603541 273603701 -8589963 + L2 LINE L2 2682 2843 -471 266 320 82 0 chr1 273603992 273604089 -8589575 + L2 LINE L2 3132 3236 -36 845 127 0 0 chr1 273604675 273604793 -8588871 + AluY SINE Alu 1 118 -193 180 97 0 0 chr1 273604793 273604824 -8588840 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2053 74 67 7 chr1 273605629 273605914 -8587750 - AluY SINE Alu -9 302 1 855 211 6 0 chr1 273606073 273606234 -8587430 - FRAM SINE Alu -9 167 6 3458 53 2 7 chr1 273606321 273606771 -8586893 - LTR7 LTR ERV1 -2 448 1 2277 118 0 13 chr1 273608826 273609003 -8584661 - AluSx SINE Alu -2 310 137 2214 92 0 0 chr1 273609003 273609286 -8584378 - AluSc SINE Alu -8 301 19 2277 118 0 13 chr1 273609286 273609422 -8584242 - AluSx SINE Alu -175 137 1 333 0 0 0 chr1 273610150 273610187 -8583477 + (A)n Simple_repeat Simple_repeat 1 37 0 1471 113 50 14 chr1 273610392 273610614 -8583050 - MER30 DNA MER1_type 0 230 1 1949 186 12 33 chr1 273610624 273611048 -8582616 - L1MC3 LINE L1 -167 7618 7204 1395 183 36 30 chr1 273611304 273611605 -8582059 + L1MD2 LINE L1 6047 6349 -10 1235 266 135 58 chr1 273611630 273612658 -8581006 - L1MC4a LINE L1 -1438 6370 5264 366 147 73 7 chr1 273612659 273613083 -8580581 + (TA)n Simple_repeat Simple_repeat 1 451 0 252 213 0 0 chr1 273613149 273613210 -8580454 + (TA)n Simple_repeat Simple_repeat 2 62 0 262 241 0 17 chr1 273613485 273613543 -8580121 + L2 LINE L2 3255 3311 -2 2357 102 0 0 chr1 273613903 273614206 -8579458 + AluSq SINE Alu 1 303 -10 26 0 0 0 chr1 273615074 273615100 -8578564 + AT_rich Low_complexity Low_complexity 1 26 0 232 354 101 6 chr1 273615909 273616067 -8577597 + MIR SINE MIR 51 223 -39 2308 92 0 0 chr1 273617734 273618029 -8575635 + AluY SINE Alu 1 295 -16 327 25 0 0 chr1 273618947 273618987 -8574677 + (TG)n Simple_repeat Simple_repeat 2 41 0 2342 91 0 0 chr1 273620872 273621170 -8572494 - AluY SINE Alu -13 298 1 1847 188 95 35 chr1 273621179 273621609 -8572055 - MLT2B1 LTR ERVL -64 456 1 945 286 75 16 chr1 273621675 273622063 -8571601 + LTR16A LTR ERVL 31 441 -9 444 322 78 43 chr1 273622066 273622244 -8571420 - LTR16C LTR ERVL -78 413 222 2356 58 17 0 chr1 273622244 273622539 -8571125 - AluY SINE Alu -7 304 5 444 322 78 43 chr1 273622539 273622615 -8571049 - LTR16C LTR ERVL -269 222 150 405 327 83 73 chr1 273622837 273623415 -8570249 + L1ME2 LINE L1 516 1099 -5020 1009 252 90 46 chr1 273623419 273624316 -8569348 + L1ME2 LINE L1 1115 6145 -2 2642 30 0 0 chr1 273624556 273624852 -8568812 + AluY SINE Alu 1 296 -15 373 278 129 24 chr1 273624862 273625117 -8568547 + L1ME3A LINE L1 5010 5291 -855 195 69 0 0 chr1 273625537 273625566 -8568098 + (A)n Simple_repeat Simple_repeat 1 29 0 389 212 13 1 chr1 273625575 273625687 -8567977 + L1ME3A LINE L1 5843 5956 -206 2297 96 7 3 chr1 273625972 273626275 -8567389 + AluSp SINE Alu 2 305 -8 1974 155 59 34 chr1 273626799 273627334 -8566330 - MLT2A2 LTR ERVL 0 554 1 622 293 58 0 chr1 273627339 273627544 -8566120 - MIR SINE MIR -40 222 6 2461 117 64 17 chr1 273628463 273628872 -8564792 - MSTA LTR MaLR 0 428 1 2239 88 0 3 chr1 273629284 273629599 -8564065 - AluSq SINE Alu 0 314 1 733 232 36 0 chr1 273629701 273629869 -8563795 + MIR SINE MIR 68 241 -21 2878 309 97 25 chr1 273629880 273630948 -8562716 + L2 LINE L2 1382 2639 -674 1906 107 50 4 chr1 273630948 273631229 -8562435 + AluSg SINE Alu 1 294 -16 2878 309 97 25 chr1 273631229 273631955 -8561709 + L2 LINE L2 2639 3311 -2 193 304 64 56 chr1 273632020 273632145 -8561519 - MIR SINE MIR -56 206 81 532 284 36 46 chr1 273633899 273634093 -8559571 - MIR SINE MIR -51 211 20 2597 49 0 0 chr1 273634301 273634605 -8559059 + AluY SINE Alu 1 304 -7 2189 118 0 6 chr1 273635209 273635522 -8558142 + AluSx SINE Alu 1 311 -1 2904 179 33 69 chr1 273635777 273636497 -8557167 + LTR8A LTR ERV1 34 727 0 2168 91 38 0 chr1 273637574 273637861 -8555803 + AluSg SINE Alu 1 298 -12 182 377 0 0 chr1 273638726 273638795 -8554869 + MIR SINE MIR 67 135 -127 * 193 309 37 81 chr1 273638786 273638922 -8554742 - L2 LINE L2 0 3272 3143 349 241 103 9 chr1 273639118 273639234 -8554430 - L1MC4 LINE L1 -605 7437 7311 331 250 11 11 chr1 273639441 273639529 -8554135 - MLT1H LTR MaLR -461 88 1 1861 127 60 24 chr1 273639845 273640176 -8553488 + MER61A LTR ERV1 1 343 0 204 40 0 0 chr1 273641243 273641268 -8552396 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr1 273641341 273641361 -8552303 + (CA)n Simple_repeat Simple_repeat 2 21 0 281 261 0 7 chr1 273641982 273642120 -8551544 + (TA)n Simple_repeat Simple_repeat 2 138 0 1811 180 39 30 chr1 273642796 273643157 -8550507 + THE1B LTR MaLR 1 364 0 6219 98 3 1 chr1 273644986 273646143 -8547521 + L1PB1 LINE L1 4991 6151 0 4416 180 50 15 chr1 273646188 273647072 -8546592 + L1MA7 LINE L1 5376 6290 -1 892 281 107 3 chr1 273647922 273648201 -8545463 + L1ME2 LINE L1 4752 5085 -1061 1770 112 0 0 chr1 273648201 273648434 -8545230 + AluSc SINE Alu 1 233 -76 892 281 107 3 chr1 273648434 273648545 -8545119 + L1ME2 LINE L1 5085 5183 -963 272 135 0 0 chr1 273648589 273648641 -8545023 + L1MC4 LINE L1 6652 6703 -1339 1442 239 127 18 chr1 273648790 273649301 -8544363 + L1ME2 LINE L1 5598 6164 0 4555 200 67 3 chr1 273649704 273651207 -8542457 + L1PBa LINE L1 1795 3395 -3467 1170 204 178 36 chr1 273651326 273651742 -8541922 - MLT1D LTR MaLR -9 496 22 874 245 24 5 chr1 273652284 273652496 -8541168 + MER20 DNA MER1_type 2 217 -2 211 247 123 27 chr1 273652621 273652694 -8540970 - L2 LINE L2 -15 3298 3219 275 328 0 9 chr1 273652746 273652862 -8540802 + (TA)n Simple_repeat Simple_repeat 1 115 0 28 0 0 0 chr1 273654527 273654555 -8539109 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr1 273655452 273655477 -8538187 + (CA)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chr1 273657485 273657519 -8536145 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr1 273657648 273657692 -8535972 + AT_rich Low_complexity Low_complexity 1 44 0 215 192 61 101 chr1 273658124 273658223 -8535441 + MIR SINE MIR 118 212 -50 323 185 0 0 chr1 273659445 273659510 -8534154 - MLT1E LTR MaLR -4 563 499 2278 83 0 29 chr1 273659510 273659823 -8533841 + AluY SINE Alu 1 304 -7 321 318 0 27 chr1 273659853 273660001 -8533663 + L1MCc LINE L1 165 308 -6115 345 214 29 0 chr1 273660113 273660183 -8533481 - MLT1E LTR MaLR -65 528 457 685 216 16 22 chr1 273660184 273660369 -8533295 - L1MC3 LINE L1 -1530 6324 6141 2049 162 50 0 chr1 273660371 273660730 -8532934 - MER57A LTR ERV1 0 403 27 2415 231 74 10 chr1 273660748 273661805 -8531859 - L1MC3 LINE L1 -743 5472 4864 1879 207 61 114 chr1 273661823 273662696 -8530968 + LTR1B LTR ERV1 1 826 0 409 254 125 19 chr1 273662771 273663035 -8530629 - L1MC3 LINE L1 -5273 1123 832 1583 158 68 0 chr1 273663083 273663348 -8530316 + AluSx SINE Alu 1 283 -29 230 57 0 29 chr1 273663348 273663383 -8530281 + (TA)n Simple_repeat Simple_repeat 1 34 0 855 166 0 0 chr1 273663383 273663540 -8530124 + (TG)n Simple_repeat Simple_repeat 2 158 0 340 349 54 69 chr1 273663568 273663918 -8529746 - L1MC3 LINE L1 -5654 742 398 234 250 0 31 chr1 273664899 273664963 -8528701 + CT-rich Low_complexity Low_complexity 2 63 0 468 18 0 0 chr1 273665148 273665203 -8528461 + AluSq/x SINE Alu 81 135 -177 297 0 0 0 chr1 273665827 273665860 -8527804 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 196 30 15 chr1 273666082 273666215 -8527449 + (TA)n Simple_repeat Simple_repeat 2 136 0 180 200 0 0 chr1 273666808 273666853 -8526811 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr1 273666990 273667012 -8526652 + AT_rich Low_complexity Low_complexity 1 22 0 195 283 81 71 chr1 273667594 273667693 -8525971 - MER5B DNA MER1_type -76 102 3 2039 128 83 3 chr1 273669791 273670127 -8523537 + THE1B LTR MaLR 2 364 0 222 296 0 42 chr1 273670219 273670290 -8523374 + L2 LINE L2 3246 3313 0 405 0 0 0 chr1 273673348 273673393 -8520271 + (TTATA)n Simple_repeat Simple_repeat 1 45 0 2517 126 25 126 chr1 273675480 273675963 -8517701 - Tigger2 DNA MER2_type 0 2718 1 2123 116 3 13 chr1 273677020 273677321 -8516343 - AluSg SINE Alu -12 298 1 344 159 34 45 chr1 273677412 273677500 -8516164 - LTR9 LTR ERV1 -83 529 443 238 330 61 0 chr1 273677526 273677641 -8516023 - MIR SINE MIR -5 257 136 227 348 181 33 chr1 273678015 273678285 -8515379 - L2 LINE L2 -337 2977 2668 423 242 11 0 chr1 273678510 273678605 -8515059 - Tigger7 DNA MER2_type 0 2487 2392 942 203 10 5 chr1 273678608 273678800 -8514864 - Tigger7 DNA MER2_type -2220 267 75 460 67 0 27 chr1 273679192 273679267 -8514397 + (TTCC)n Simple_repeat Simple_repeat 4 76 0 712 169 8 0 chr1 273679271 273679395 -8514269 - FLAM_C SINE Alu -18 125 1 445 216 9 18 chr1 273679704 273679815 -8513849 - MER3 DNA MER1_type -6 203 94 248 168 22 0 chr1 273679822 273679981 -8513683 + AluJo/FLAM SINE Alu 1 132 -170 958 314 110 46 chr1 273680189 273680249 -8513415 + L2 LINE L2 2398 2453 -860 180 0 0 0 chr1 273680249 273680269 -8513395 + (CAA)n Simple_repeat Simple_repeat 2 21 0 958 314 110 46 chr1 273680269 273681074 -8512590 + L2 LINE L2 2453 3311 -2 606 182 41 0 chr1 273681283 273681525 -8512139 - L1MA7 LINE L1 -11 6280 5923 24 67 0 0 chr1 273681807 273681852 -8511812 + AT_rich Low_complexity Low_complexity 1 45 0 180 400 21 0 chr1 273683121 273683216 -8510448 + MIR SINE MIR 19 115 -93 343 244 58 39 chr1 273683641 273683797 -8509867 + LTR37B LTR ERV1 247 405 -63 24 0 0 0 chr1 273683944 273683968 -8509696 + AT_rich Low_complexity Low_complexity 1 24 0 579 13 13 26 chr1 273685734 273685810 -8507854 + THE1B LTR MaLR 228 302 -62 213 65 0 0 chr1 273685813 273685844 -8507820 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 964 176 0 13 chr1 273686476 273686635 -8507029 - AluJb SINE Alu -9 303 147 353 208 8 75 chr1 273687369 273687469 -8506195 - MER34C LTR ERV1 0 585 493 2226 100 3 0 chr1 273687469 273687769 -8505895 + AluSq SINE Alu 1 301 -12 353 208 8 75 chr1 273687769 273687788 -8505876 - MER34C LTR ERV1 -92 493 474 687 198 19 0 chr1 273687898 273688055 -8505609 + L1ME3A LINE L1 4901 5060 -1086 2286 101 0 0 chr1 273688071 273688369 -8505295 - AluSg SINE Alu -12 298 1 262 217 17 0 chr1 273689304 273689364 -8504300 + GA-rich Low_complexity Low_complexity 2 62 0 252 0 0 0 chr1 273689597 273689625 -8504039 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 0 0 0 chr1 273689935 273689957 -8503707 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 273690366 273690388 -8503276 + AT_rich Low_complexity Low_complexity 1 22 0 243 315 0 0 chr1 273691314 273691368 -8502296 + L2 LINE L2 3210 3263 -9 3768 202 72 16 chr1 273692888 273693691 -8499973 - MER21B LTR ERV1 -15 848 1 25 75 0 0 chr1 273694385 273694438 -8499226 + AT_rich Low_complexity Low_complexity 1 53 0 336 232 0 14 chr1 273694446 273694513 -8499151 + Tigger5 DNA MER2_type 10 75 -2248 426 195 0 35 chr1 273694513 273694600 -8499064 - Tigger5 DNA MER2_type -1 2322 2239 389 222 12 0 chr1 273694585 273694666 -8498998 + Tigger5 DNA MER2_type 2242 2323 0 * 29 0 0 0 chr1 273694998 273695027 -8498637 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 273695079 273695102 -8498562 + AT_rich Low_complexity Low_complexity 1 23 0 1827 172 0 0 chr1 273695128 273695431 -8498233 - AluJb SINE Alu -5 307 5 24 32 0 0 chr1 273695634 273695665 -8497999 + AT_rich Low_complexity Low_complexity 1 31 0 352 300 171 16 chr1 273695803 273696350 -8497314 + L1ME3A LINE L1 5313 5946 -224 1676 163 71 15 chr1 273696378 273696703 -8496961 - MER61A LTR ERV1 0 343 1 22298 88 34 2 chr1 273696703 273700377 -8493287 - MER61A-int LTR ERV1 0 5217 1320 2070 180 79 13 chr1 273700370 273701036 -8492628 - MER61A-int LTR ERV1 -4440 777 1 * 1801 162 58 15 chr1 273701036 273701364 -8492300 - MER61A LTR ERV1 0 343 2 23 54 0 0 chr1 273701958 273701995 -8491669 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr1 273702024 273702048 -8491616 + AT_rich Low_complexity Low_complexity 1 24 0 362 74 19 0 chr1 273703709 273703763 -8489901 + (GA)n Simple_repeat Simple_repeat 2 56 0 1312 191 69 28 chr1 273704004 273704292 -8489372 - AluJo SINE Alu -12 300 1 722 191 8 0 chr1 273704297 273704428 -8489236 - FLAM_C SINE Alu 0 133 2 25 0 0 0 chr1 273705086 273705111 -8488553 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 273707919 273707949 -8485715 + AT_rich Low_complexity Low_complexity 1 30 0 414 259 18 9 chr1 273708182 273708294 -8485370 + MER81 DNA DNA 2 114 0 378 290 92 20 chr1 273708517 273708820 -8484844 + L1MC/D LINE L1 3658 3982 -2164 519 319 57 13 chr1 273709244 273709558 -8484106 + L1MC/D LINE L1 4982 5309 -837 269 293 28 61 chr1 273709589 273709692 -8483972 + L1MC/D LINE L1 5382 5478 -2330 2261 62 48 0 chr1 273709692 273709983 -8483681 + AluY SINE Alu 1 305 -6 269 293 28 61 chr1 273709983 273710060 -8483604 + L1MC/D LINE L1 5478 5556 -2252 2336 107 0 7 chr1 273710156 273710464 -8483200 + AluSx SINE Alu 1 306 -6 848 225 0 6 chr1 273710757 273710917 -8482747 + FRAM SINE Alu 1 156 -20 26 82 0 0 chr1 273711049 273711110 -8482554 + AT_rich Low_complexity Low_complexity 1 61 0 63 36 0 0 chr1 273711232 273711316 -8482348 + AT_rich Low_complexity Low_complexity 1 84 0 329 121 79 0 chr1 273711316 273711481 -8482183 + (TA)n Simple_repeat Simple_repeat 2 179 0 266 85 68 62 chr1 273711491 273711668 -8481996 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 57 16 0 0 chr1 273711675 273711739 -8481925 + AT_rich Low_complexity Low_complexity 1 64 0 302 224 52 8 chr1 273712020 273712154 -8481510 + (TA)n Simple_repeat Simple_repeat 1 140 0 597 132 0 28 chr1 273712285 273712391 -8481273 + L1PA15 LINE L1 6063 6165 0 2371 108 30 21 chr1 273712464 273712836 -8480828 + THE1C LTR MaLR 1 375 0 465 240 74 78 chr1 273713136 273713394 -8480270 - HAL1b LINE L1 -517 831 575 353 273 44 60 chr1 273713888 273714071 -8479593 - L1ME LINE L1 -372 5749 5570 456 127 9 109 chr1 273714145 273714255 -8479409 - L1PA14 LINE L1 -633 5528 5430 977 121 29 0 chr1 273714255 273714395 -8479269 + L1PA14 LINE L1 5534 5677 -484 299 0 0 0 chr1 273714395 273714428 -8479236 + U2 snRNA snRNA 1 33 -155 3123 119 16 4 chr1 273714428 273714923 -8478741 + L1PA14 LINE L1 5661 6161 0 2172 110 51 34 chr1 273715152 273715508 -8478156 + THE1B LTR MaLR 1 362 -2 21 0 0 0 chr1 273716299 273716320 -8477344 + AT_rich Low_complexity Low_complexity 1 21 0 555 181 225 22 chr1 273717333 273717515 -8476149 + L1MA10 LINE L1 6032 6250 -84 570 30 0 0 chr1 273717527 273717594 -8476070 - L1PA3 LINE L1 -295 5860 5794 2485 18 3 0 chr1 273717594 273717877 -8475787 + L1PA3 LINE L1 5865 6151 -4 275 140 0 18 chr1 273717914 273717971 -8475693 + L1MA10 LINE L1 6278 6333 -1 362 325 105 39 chr1 273718791 273719077 -8474587 + L1MEd LINE L1 566 870 -5249 23 33 0 0 chr1 273719362 273719392 -8474272 + AT_rich Low_complexity Low_complexity 1 30 0 350 224 21 70 chr1 273719450 273719593 -8474071 + L1ME LINE L1 4550 4685 -1461 1965 94 0 0 chr1 273719593 273719849 -8473815 - AluY SINE Alu -13 298 43 400 167 0 13 chr1 273719951 273720029 -8473635 - AluY SINE Alu -222 89 13 527 311 67 39 chr1 273720088 273720516 -8473148 + L1ME LINE L1 4747 5161 -1003 1793 171 0 31 chr1 273720516 273720837 -8472827 + AluJb SINE Alu 2 312 0 527 311 67 39 chr1 273720837 273720883 -8472781 + L1ME LINE L1 5161 5204 -960 2251 91 3 38 chr1 273720883 273721202 -8472462 + AluSp SINE Alu 1 308 -5 527 311 67 39 chr1 273721202 273721701 -8471963 + L1ME LINE L1 5204 5748 -416 27 62 0 0 chr1 273722025 273722073 -8471591 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1 273722114 273722136 -8471528 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr1 273722474 273722513 -8471151 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr1 273723357 273723378 -8470286 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr1 273723840 273723882 -8469782 + AT_rich Low_complexity Low_complexity 1 42 0 578 348 58 20 chr1 273724484 273724929 -8468735 + HERVL LTR ERVL 910 1371 -3625 699 107 34 23 chr1 273725108 273725285 -8468379 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2256 173 41 57 chr1 273725308 273725847 -8467817 + MER21A LTR ERV1 330 916 -15 1062 327 67 37 chr1 273725924 273726977 -8466687 + HERVL LTR ERVL 3082 4166 -1488 424 337 100 14 chr1 273727220 273727511 -8466153 + LTR16C LTR ERVL 4 319 -172 285 133 40 107 chr1 273727549 273727624 -8466040 + LTR16C LTR ERVL 408 477 -14 210 343 36 36 chr1 273728925 273729062 -8464602 + L2 LINE L2 976 1112 -2202 294 294 82 29 chr1 273729720 273729890 -8463774 + MIR SINE MIR 28 206 -56 22 56 0 0 chr1 273730258 273730294 -8463370 + AT_rich Low_complexity Low_complexity 1 36 0 969 253 55 7 chr1 273730525 273730833 -8462831 + MER33 DNA MER1_type 2 324 0 1714 170 51 183 chr1 273731173 273731806 -8461858 + LTR8A LTR ERV1 34 542 -185 2012 102 0 7 chr1 273731806 273732080 -8461584 + AluY SINE Alu 38 309 -2 1714 170 51 183 chr1 273732080 273732245 -8461419 + LTR8A LTR ERV1 542 727 0 486 300 15 0 chr1 273733262 273733392 -8460272 + MER5A DNA MER1_type 58 189 0 203 349 35 0 chr1 273734762 273734848 -8458816 + L2 LINE L2 3183 3271 -1 513 304 135 42 chr1 273735782 273736190 -8457474 - MLT1J1 LTR MaLR 0 446 1 32 0 0 0 chr1 273736633 273736665 -8456999 + AT_rich Low_complexity Low_complexity 1 32 0 1871 155 0 21 chr1 273736667 273736958 -8456706 - AluSx SINE Alu -27 285 1 30 27 0 0 chr1 273737244 273737281 -8456383 + AT_rich Low_complexity Low_complexity 1 37 0 324 277 82 61 chr1 273737427 273737658 -8456006 - L1ME4a LINE L1 -194 5927 5692 2253 111 0 0 chr1 273737753 273738051 -8455613 - AluSc SINE Alu -11 298 1 223 236 0 18 chr1 273738086 273738141 -8455523 + CT-rich Low_complexity Low_complexity 1 54 0 325 262 90 33 chr1 273738144 273738266 -8455398 - L2 LINE L2 -6 3307 3179 1119 331 75 38 chr1 273738465 273738823 -8454841 - L2 LINE L2 -613 2701 2358 1458 181 41 84 chr1 273738823 273739215 -8454449 - THE1C LTR MaLR 0 375 1 1119 331 75 38 chr1 273739215 273739598 -8454066 - L2 LINE L2 -956 2358 1932 2234 109 0 0 chr1 273740267 273740560 -8453104 - AluSc SINE Alu -16 293 1 1949 148 39 15 chr1 273741490 273741820 -8451844 + THE1B LTR MaLR 27 364 0 305 311 195 33 chr1 273742009 273742430 -8451234 + L2 LINE L2 2364 2852 -462 923 126 145 42 chr1 273742882 273743123 -8450541 - Tigger4(Zombi) DNA MER2_type 0 2731 1 405 290 58 54 chr1 273743257 273743577 -8450087 + L1MC4a LINE L1 5540 5735 -386 1554 165 0 0 chr1 273743577 273743819 -8449845 - AluSx SINE Alu -8 304 63 405 290 58 54 chr1 273743819 273743867 -8449797 + L1MC4a LINE L1 5735 5781 -340 246 176 0 0 chr1 273743886 273743937 -8449727 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 2023 129 20 0 chr1 273744137 273744458 -8449206 + AluSc SINE Alu 1 327 0 6235 181 157 49 chr1 273744497 273746081 -8447583 - MER52A LTR ERV1 0 1755 1 25 0 0 0 chr1 273746180 273746205 -8447459 + AT_rich Low_complexity Low_complexity 1 25 0 300 299 66 15 chr1 273746210 273746347 -8447317 + L1ME1 LINE L1 5122 5265 -881 353 302 82 38 chr1 273746387 273746814 -8446850 + L1ME1 LINE L1 5412 5857 -309 227 342 27 18 chr1 273747322 273747433 -8446231 - L2 LINE L2 -5 3308 3197 260 27 27 0 chr1 273748058 273748095 -8445569 + (TG)n Simple_repeat Simple_repeat 1 38 0 574 284 25 30 chr1 273749265 273749501 -8444163 - L1ME2 LINE L1 -13 6151 5917 1228 246 86 42 chr1 273749581 273749878 -8443786 - L1ME2 LINE L1 -258 5908 5579 1860 175 3 0 chr1 273749878 273750169 -8443495 - AluJb SINE Alu -16 296 5 1228 246 86 42 chr1 273750169 273750374 -8443290 - L1ME2 LINE L1 -587 5579 5384 1879 110 49 0 chr1 273750974 273751266 -8442398 + AluSg SINE Alu 6 310 0 333 265 78 10 chr1 273752550 273752652 -8441012 - MIR SINE MIR -131 131 23 25 0 0 0 chr1 273754271 273754296 -8439368 + AT_rich Low_complexity Low_complexity 1 25 0 1933 209 25 22 chr1 273754340 273755017 -8438647 - L1MC/D LINE L1 -693 5666 4982 225 0 0 0 chr1 273755299 273755324 -8438340 + (T)n Simple_repeat Simple_repeat 1 25 0 1786 119 48 0 chr1 273756397 273756685 -8436979 + AluSx SINE Alu 1 301 0 237 159 0 0 chr1 273756741 273756785 -8436879 + (TA)n Simple_repeat Simple_repeat 2 45 0 2377 71 3 3 chr1 273756910 273757221 -8436443 - AluY SINE Alu 0 311 1 33 0 0 0 chr1 273758032 273758065 -8435599 + AT_rich Low_complexity Low_complexity 1 33 0 694 301 37 0 chr1 273758330 273758546 -8435118 - MER58A DNA MER1_type 0 224 1 253 200 0 0 chr1 273758570 273758615 -8435049 - L2 LINE L2 0 3272 3228 2442 81 0 0 chr1 273759120 273759418 -8434246 - AluSc SINE Alu -9 300 3 377 232 37 0 chr1 273760198 273760280 -8433384 + MER7A DNA MER2_type 1 83 -263 24 0 0 0 chr1 273760280 273760304 -8433360 + AT_rich Low_complexity Low_complexity 1 24 0 2511 95 17 0 chr1 273760307 273760656 -8433008 - THE1A LTR MaLR 0 355 1 11377 106 7 1 chr1 273760656 273761739 -8431925 - THE1A-int LTR MaLR 0 1580 482 2216 91 11 0 chr1 273761739 273762025 -8431639 - AluSc SINE Alu -6 303 15 11377 106 7 1 chr1 273762025 273762511 -8431153 - THE1A-int LTR MaLR -1098 482 1 2384 101 26 0 chr1 273762511 273762857 -8430807 - THE1A LTR MaLR 0 355 1 4956 113 26 9 chr1 273762857 273763626 -8430038 - L1PB1 LINE L1 -13 6138 5357 2112 248 26 2 chr1 273763626 273764210 -8429454 + L1PB1 LINE L1 4759 5356 -790 1506 187 3 3 chr1 273764210 273764493 -8429171 + MER7A DNA MER2_type 65 345 -1 306 0 0 0 chr1 273765211 273765245 -8428419 + (TG)n Simple_repeat Simple_repeat 2 35 0 1770 164 19 13 chr1 273765330 273765640 -8428024 - MSTB LTR MaLR 0 426 115 309 253 63 63 chr1 273767789 273767895 -8425769 + MIR SINE MIR 103 211 -51 2226 109 30 0 chr1 273767895 273768198 -8425466 - AluSx SINE Alu 0 312 1 309 253 63 63 chr1 273768198 273768249 -8425415 + MIR SINE MIR 210 260 -2 1569 121 0 5 chr1 273768872 273769095 -8424569 - AluSp SINE Alu -91 222 1 268 139 63 25 chr1 273769136 273769215 -8424449 + (TTATA)n Simple_repeat Simple_repeat 4 85 0 257 233 35 103 chr1 273769949 273770065 -8423599 - MIR SINE MIR -16 246 139 2232 110 3 3 chr1 273770219 273770529 -8423135 + AluSg SINE Alu 1 310 0 217 175 127 16 chr1 273770656 273770719 -8422945 + MIR SINE MIR 57 126 -82 1765 165 98 42 chr1 273771333 273771740 -8421924 - MSTB1 LTR MaLR -2 430 1 276 275 35 18 chr1 273774160 273774331 -8419333 + L1M4 LINE L1 3035 3208 -2938 246 81 0 0 chr1 273774387 273774424 -8419240 + (GA)n Simple_repeat Simple_repeat 2 38 0 252 59 0 0 chr1 273774474 273774508 -8419156 + (TG)n Simple_repeat Simple_repeat 2 35 0 1526 194 21 21 chr1 273775555 273775844 -8417820 - AluJo SINE Alu -23 289 1 387 176 15 0 chr1 273776205 273776273 -8417391 + Tigger2 DNA MER2_type 1 69 -2649 * 2590 139 27 11 chr1 273776262 273776700 -8416964 + Tigger2 DNA MER2_type 2273 2717 -1 2430 112 19 16 chr1 273776925 273777299 -8416365 + THE1C LTR MaLR 1 375 0 1047 325 67 35 chr1 273778812 273779520 -8414144 - L2 LINE L2 0 3313 2576 2143 121 74 0 chr1 273779520 273779859 -8413805 - THE1B LTR MaLR 0 364 1 1047 325 67 35 chr1 273779859 273779918 -8413746 - L2 LINE L2 -737 2576 2520 2018 218 57 20 chr1 273779927 273780382 -8413282 + MER70A LTR ERVL 1 472 0 3656 204 53 12 chr1 273780576 273781422 -8412242 + MER70A-int LTR ERVL 224 1191 -3832 1751 201 9 0 chr1 273781424 273781748 -8411916 + MER70A-int LTR ERVL 1623 1949 -3074 1461 217 52 0 chr1 273781770 273782056 -8411608 + MER70A-int LTR ERVL 2235 2535 -2488 952 240 108 51 chr1 273782061 273782470 -8411194 - L2 LINE L2 -813 2501 2070 2238 112 3 0 chr1 273782528 273782823 -8410841 - AluSx SINE Alu -16 296 1 347 301 99 28 chr1 273783403 273783798 -8409866 - L1M4 LINE L1 -1901 4245 3823 213 154 0 0 chr1 273786371 273786410 -8407254 + (TA)n Simple_repeat Simple_repeat 2 40 0 1085 175 16 36 chr1 273786495 273786747 -8406917 + L1MD3 LINE L1 7749 7995 0 26 30 0 0 chr1 273787520 273787553 -8406111 + AT_rich Low_complexity Low_complexity 1 33 0 1446 242 58 11 chr1 273788250 273788715 -8404949 + L1M3c LINE L1 1476 1939 -4551 381 157 0 0 chr1 273788712 273788782 -8404882 + L1MD3 LINE L1 7926 7995 0 * 847 229 135 51 chr1 273788862 273788898 -8404766 + L1MDa LINE L1 1969 2001 -4539 1897 177 121 5 chr1 273788898 273789311 -8404353 - LOR1b LTR ERV1 0 461 1 847 229 135 51 chr1 273789311 273789762 -8403902 + L1MDa LINE L1 2001 2497 -4043 2542 264 69 60 chr1 273789817 273790107 -8403557 + L1MDa LINE L1 2492 2778 -3762 2381 87 3 6 chr1 273790107 273790419 -8403245 + AluSp SINE Alu 1 311 -2 2542 264 69 60 chr1 273790419 273790613 -8403051 + L1MDa LINE L1 2778 2969 -3571 2150 119 0 0 chr1 273790613 273790906 -8402758 - AluSq SINE Alu -20 293 1 2542 264 69 60 chr1 273790906 273792316 -8401348 + L1MDa LINE L1 2969 4402 -2138 1817 258 33 26 chr1 273792322 273792741 -8400923 + L1MDa LINE L1 4798 5226 -1314 2063 132 3 0 chr1 273792741 273793052 -8400612 + AluSp SINE Alu 1 312 -1 1817 258 33 26 chr1 273793052 273793391 -8400273 + L1MDa LINE L1 5226 5561 -979 1207 252 13 41 chr1 273793415 273793733 -8399931 - MLT2B1 LTR ERVL -10 510 202 1093 202 0 10 chr1 273793723 273793921 -8399743 + MLT1A1 LTR MaLR 170 365 0 * 762 192 78 1 chr1 273793926 273794192 -8399472 + L1MDa LINE L1 5578 5862 -743 265 131 0 62 chr1 273794391 273794521 -8399143 + (TA)n Simple_repeat Simple_repeat 2 123 0 444 120 0 63 chr1 273794538 273794729 -8398935 + (TA)n Simple_repeat Simple_repeat 1 179 0 2486 78 0 0 chr1 273794905 273795246 -8398418 - AluSc SINE Alu 0 341 1 362 289 134 10 chr1 273795288 273795482 -8398182 + MLT1J LTR MaLR 292 509 -2 2258 60 42 0 chr1 273795745 273796028 -8397636 + AluY SINE Alu 1 295 -16 204 236 36 55 chr1 273796162 273796272 -8397392 + A-rich Low_complexity Low_complexity 6 113 0 986 221 45 96 chr1 273797993 273798346 -8395318 + MLT1D LTR MaLR 1 335 -170 241 329 30 78 chr1 273800539 273800706 -8392958 + MER5A DNA MER1_type 31 189 0 271 410 38 24 chr1 273801233 273801443 -8392221 - L3 LINE CR1 -148 1429 1217 734 176 0 22 chr1 273801495 273801631 -8392033 - FLAM_A SINE Alu 0 133 1 1717 212 148 60 chr1 273802397 273802442 -8391222 - LTR65 LTR ERV1 -29 640 600 2155 125 3 0 chr1 273802442 273802745 -8390919 - AluSp SINE Alu -9 304 1 1717 212 148 60 chr1 273802745 273803285 -8390379 - LTR65 LTR ERV1 -69 600 3 728 339 78 8 chr1 273803842 273804009 -8389655 + LTR33 LTR ERVL 109 263 -258 2470 79 3 0 chr1 273804009 273804312 -8389352 - AluSp SINE Alu -9 304 1 728 339 78 8 chr1 273804312 273804530 -8389134 + LTR33 LTR ERVL 263 521 0 188 365 19 28 chr1 273804869 273804976 -8388688 - L3 LINE CR1 -1023 554 449 25 31 0 0 chr1 273806172 273806204 -8387460 + AT_rich Low_complexity Low_complexity 1 32 0 325 261 84 17 chr1 273807399 273807518 -8386146 - L1MEc LINE L1 -5486 910 784 423 232 81 70 chr1 273807560 273807745 -8385919 - MER3 DNA MER1_type -16 193 7 495 314 73 61 chr1 273807756 273808180 -8385484 - L1MEc LINE L1 -5659 737 309 231 203 63 13 chr1 273808414 273808493 -8385171 - L1ME LINE L1 -2391 3689 3607 2326 53 0 3 chr1 273808567 273808850 -8384814 + AluY SINE Alu 1 282 -29 1167 267 28 66 chr1 273808865 273809337 -8384327 + MLT1D LTR MaLR 52 505 0 463 265 73 56 chr1 273809354 273809833 -8383831 - L1ME LINE L1 -2506 3574 3088 574 139 20 0 chr1 273809847 273809948 -8383716 - L1PA16 LINE L1 -9 6157 6055 526 321 73 18 chr1 273809984 273810503 -8383161 - L1ME LINE L1 -4839 1139 695 1751 174 10 7 chr1 273811474 273811773 -8381891 + AluJo SINE Alu 1 300 -12 2203 91 11 0 chr1 273812429 273812759 -8380905 - AluSx SINE Alu 0 312 1 2002 182 8 10 chr1 273813412 273813803 -8379861 - MLT1B LTR MaLR 0 390 1 2075 126 3 3 chr1 273815577 273815870 -8377794 + AluSc SINE Alu 1 293 -16 429 129 0 0 chr1 273817611 273817681 -8375983 + (A)n Simple_repeat Simple_repeat 1 70 0 2009 102 13 36 chr1 273817874 273818179 -8375485 - AluSx SINE Alu -14 298 1 183 80 0 0 chr1 273818623 273818648 -8375016 + (CCTG)n Simple_repeat Simple_repeat 2 26 0 336 102 0 0 chr1 273819818 273819867 -8373797 + (TG)n Simple_repeat Simple_repeat 2 50 0 2078 65 3 101 chr1 273820868 273821206 -8372458 + AluSc SINE Alu 1 305 -4 748 254 29 0 chr1 273821498 273821703 -8371961 - L1MA6 LINE L1 -6 6294 6084 448 284 52 4 chr1 273822105 273822248 -8371416 + MLT1H LTR MaLR 416 549 0 531 246 25 8 chr1 273823222 273823344 -8370320 - L2 LINE L2 0 3313 3190 1066 215 57 37 chr1 273823357 273823711 -8369953 - LTR52 LTR ERVL -36 385 25 3957 287 72 40 chr1 273823732 273825715 -8367949 - LTR52-int LTR ERVL -1 3555 1511 1775 104 34 34 chr1 273825978 273826246 -8367418 + AluSg SINE Alu 25 292 -18 187 261 0 22 chr1 273826780 273826826 -8366838 - L2 LINE L2 -15 3257 3213 289 308 8 26 chr1 273826866 273826983 -8366681 - MIR SINE MIR -128 134 20 28 48 0 0 chr1 273827905 273827947 -8365717 + AT_rich Low_complexity Low_complexity 1 42 0 1534 220 41 28 chr1 273828618 273829009 -8364655 - MSTD LTR MaLR 0 396 1 1075 261 67 0 chr1 273830026 273830294 -8363370 + AluJo SINE Alu 1 286 -16 218 274 36 24 chr1 273830745 273830829 -8362835 - MIR SINE MIR -3 259 175 520 316 85 6 chr1 273830841 273831018 -8362646 + MIR SINE MIR 1 191 -71 793 328 132 24 chr1 273831423 273832192 -8361472 + L2 LINE L2 2429 3113 -200 312 27 0 0 chr1 273832192 273832229 -8361435 + (CA)n Simple_repeat Simple_repeat 2 38 0 255 103 0 0 chr1 273832234 273832273 -8361391 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 793 328 132 24 chr1 273832273 273832285 -8361379 + L2 LINE L2 3116 3310 -3 2304 63 0 27 chr1 273832722 273833023 -8360641 - AluY SINE Alu -18 293 1 721 210 9 82 chr1 273833209 273833428 -8360236 - MER3 DNA MER1_type -6 203 1 21 0 0 0 chr1 273834400 273834421 -8359243 + AT_rich Low_complexity Low_complexity 1 21 0 708 230 15 25 chr1 273834777 273834977 -8358687 + MER33 DNA MER1_type 1 198 -126 359 266 43 0 chr1 273835316 273835410 -8358254 + MER5A DNA MER1_type 92 189 0 263 252 309 16 chr1 273836046 273836169 -8357495 - MER5A DNA MER1_type -27 162 4 182 292 42 28 chr1 273836190 273836262 -8357402 + MER5A DNA MER1_type 117 189 0 280 356 7 37 chr1 273836290 273836425 -8357239 + MER5B DNA MER1_type 16 146 -32 1754 230 9 71 chr1 273836425 273836960 -8356704 + MLT1D LTR MaLR 4 505 0 391 80 0 0 chr1 273838328 273838378 -8355286 + Tigger3b DNA MER2_type 53 102 -1129 * 2245 100 95 20 chr1 273838376 273838785 -8354879 + Tigger3b DNA MER2_type 274 713 -518 324 0 0 0 chr1 273839253 273839289 -8354375 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1755 251 62 11 chr1 273839410 273839975 -8353689 - L1MC4 LINE L1 -130 7912 7319 1049 251 47 0 chr1 273840004 273840323 -8353341 - L1MD3 LINE L1 -924 7071 6738 33 25 0 0 chr1 273840603 273840643 -8353021 + AT_rich Low_complexity Low_complexity 1 40 0 294 279 38 17 chr1 273840643 273840764 -8352900 - L1MC4 LINE L1 -1054 6788 6604 784 238 70 50 chr1 273840769 273841113 -8352551 - L1MC4a LINE L1 -1378 6435 6088 1220 135 1 1 chr1 273841178 273841345 -8352319 + THE1C LTR MaLR 1 167 -188 416 179 0 0 chr1 273841345 273841412 -8352252 + AluS SINE Alu 1 67 -236 840 118 21 118 chr1 273841518 273841643 -8352021 + HSMAR2 DNA Mariner 1133 1236 -66 2367 75 7 0 chr1 273841643 273841948 -8351716 - AluY SINE Alu -2 309 3 840 118 21 118 chr1 273841948 273842009 -8351655 + HSMAR2 DNA Mariner 1236 1301 -1 212 309 52 10 chr1 273842027 273842124 -8351540 - MIR SINE MIR -80 182 82 23 33 0 0 chr1 273842581 273842611 -8351053 + AT_rich Low_complexity Low_complexity 1 30 0 211 269 149 0 chr1 273842707 273842774 -8350890 + L2 LINE L2 3195 3271 -1 1767 253 14 22 chr1 273843461 273844096 -8349568 + L1MC4a LINE L1 4774 5405 -760 451 249 95 12 chr1 273844108 273844277 -8349387 - L1M4 LINE L1 -1162 4984 4802 448 288 35 39 chr1 273844294 273844882 -8348782 + L1MC4a LINE L1 5892 6465 -1343 318 349 0 0 chr1 273844901 273845007 -8348657 - L1MEc LINE L1 -6161 235 130 * 449 256 55 0 chr1 273845005 273845169 -8348495 + L1M4 LINE L1 3154 3326 -2820 229 116 72 14 chr1 273845246 273845315 -8348349 + (TA)n Simple_repeat Simple_repeat 1 73 0 289 363 105 24 chr1 273845850 273846183 -8347481 + L3 LINE CR1 754 1113 -464 478 99 5 89 chr1 273846216 273846407 -8347257 + (TATAA)n Simple_repeat Simple_repeat 3 177 0 256 246 36 0 chr1 273846408 273846518 -8347146 + (TTA)n Simple_repeat Simple_repeat 3 116 0 400 128 7 50 chr1 273846523 273846664 -8347000 + (TATAA)n Simple_repeat Simple_repeat 3 137 0 760 52 0 73 chr1 273846675 273846867 -8346797 + (TATAA)n Simple_repeat Simple_repeat 3 180 0 811 60 18 65 chr1 273846888 273847194 -8346470 + (TATAA)n Simple_repeat Simple_repeat 1 291 0 2460 127 72 0 chr1 273848122 273848265 -8345399 + Tigger3(Golem) DNA MER2_type 2598 2729 -300 2473 30 0 20 chr1 273848265 273848570 -8345094 + L1PA7 LINE L1 5856 6154 0 2460 127 72 0 chr1 273848570 273848828 -8344836 + Tigger3(Golem) DNA MER2_type 2729 3028 -1 276 297 132 28 chr1 273849244 273849426 -8344238 + L2 LINE L2 2623 2823 -491 390 308 166 35 chr1 273849457 273849801 -8343863 + L2 LINE L2 2923 3311 -2 284 378 47 0 chr1 273849831 273849979 -8343685 - MIR SINE MIR 0 262 108 1957 110 10 17 chr1 273850212 273850511 -8343153 - AluSx SINE Alu -15 297 1 1935 207 54 8 chr1 273851170 273851605 -8342059 - MLT2B1 LTR ERVL 0 520 28 16418 162 30 42 chr1 273851605 273851951 -8341713 - ERVL-B1 LTR ERVL -5 5759 5410 978 31 0 62 chr1 273851951 273852143 -8341521 + (TA)n Simple_repeat Simple_repeat 1 180 0 16418 162 30 42 chr1 273852143 273854642 -8339022 - ERVL-B1 LTR ERVL -354 5410 2953 2213 100 3 13 chr1 273854642 273854952 -8338712 - AluSx SINE Alu -5 307 1 16418 162 30 42 chr1 273854952 273855154 -8338510 - ERVL-B1 LTR ERVL -2811 2953 2750 552 116 0 0 chr1 273855154 273855240 -8338424 + (TA)n Simple_repeat Simple_repeat 2 87 0 3745 168 9 3 chr1 273855242 273856471 -8337193 - L1P5 LINE L1 -371 5780 4543 339 262 66 0 chr1 273857110 273857232 -8336432 + MIR SINE MIR 129 258 -4 1475 181 105 10 chr1 273857591 273857905 -8335759 + MER2 DNA MER2_type 1 344 0 21 0 0 0 chr1 273858596 273858617 -8335047 + AT_rich Low_complexity Low_complexity 1 21 0 3638 153 2 10 chr1 273858884 273859494 -8334170 + HSMAR2 DNA Mariner 1 605 -697 6019 36 8 0 chr1 273859495 273860214 -8333450 - L1PA5 LINE L1 -3 6151 5427 1092 239 16 16 chr1 273860434 273860744 -8332920 - L1MA10 LINE L1 -14 6320 6011 248 320 0 10 chr1 273861301 273861398 -8332266 + MIR SINE MIR 167 262 0 236 39 0 118 chr1 273861833 273861884 -8331780 + (T)n Simple_repeat Simple_repeat 1 45 0 2055 32 0 0 chr1 273861888 273862137 -8331527 - L1HS LINE L1 0 6155 5907 * 5682 6 0 0 chr1 273862126 273862772 -8330892 + L1HS LINE L1 5254 5899 -256 182 351 113 33 chr1 273864080 273864231 -8329433 - L2 LINE L2 -8 3264 3102 1954 162 6 19 chr1 273864822 273865181 -8328483 + L1PA16 LINE L1 5804 6157 -9 1033 282 73 30 chr1 273865245 273865706 -8327958 + L1MCa LINE L1 1 449 -5596 975 284 69 36 chr1 273866038 273866880 -8326784 + L1MCa LINE L1 651 1533 -4848 4935 202 54 17 chr1 273866881 273869018 -8324646 + L1MB1 LINE L1 4026 6141 -27 285 331 89 18 chr1 273869293 273869462 -8324202 + LTR50 LTR ERVL 3 183 -612 441 271 150 0 chr1 273869622 273869869 -8323795 + LTR50 LTR ERVL 510 793 -2 964 300 84 16 chr1 273869905 273870358 -8323306 + L1MC/D LINE L1 5302 5785 -2023 1980 190 33 3 chr1 273870367 273870735 -8322929 + MER44D DNA MER2_type 1 434 -171 1562 111 49 0 chr1 273870735 273870979 -8322685 - Tigger2 DNA MER2_type 0 2718 2463 3359 160 66 46 chr1 273871034 273871335 -8322329 - Tigger2 DNA MER2_type -1959 759 466 3392 85 2 0 chr1 273871335 273871794 -8321870 - L1PA8 LINE L1 -10 6162 5703 3359 160 66 46 chr1 273871794 273872235 -8321429 - Tigger2 DNA MER2_type -2252 466 2 321 45 0 0 chr1 273872237 273872281 -8321383 + MER44D DNA MER2_type 534 577 -128 34 93 0 0 chr1 273872288 273872385 -8321279 + AT_rich Low_complexity Low_complexity 1 97 0 2000 123 10 27 chr1 273872556 273872857 -8320807 - AluSx SINE Alu -16 296 1 398 368 102 42 chr1 273873057 273873440 -8320224 + L2 LINE L2 2894 3299 -14 270 0 0 0 chr1 273873441 273873471 -8320193 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr1 273873622 273873644 -8320020 + AT_rich Low_complexity Low_complexity 1 22 0 1809 208 18 16 chr1 273873826 273874206 -8319458 + MSTD LTR MaLR 5 385 -11 363 78 0 0 chr1 273874303 273874354 -8319310 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 57 0 0 chr1 273874613 273874648 -8319016 + AT_rich Low_complexity Low_complexity 1 35 0 656 200 30 0 chr1 273874870 273875005 -8318659 + AluSg/x SINE Alu 163 301 -11 1377 118 18 23 chr1 273875005 273875225 -8318439 + THE1C LTR MaLR 157 375 0 2100 261 69 17 chr1 273875272 273876712 -8316952 - L1MC4 LINE L1 -747 5399 4476 580 299 62 20 chr1 273877109 273877450 -8316214 + L1M4 LINE L1 3621 3975 -2171 344 292 144 19 chr1 273878070 273878542 -8315122 + L1M4 LINE L1 4054 4584 -1562 2496 56 3 0 chr1 273879676 273879982 -8313682 - AluY SINE Alu -4 307 1 228 174 0 0 chr1 273880592 273880638 -8313026 + LTR66 LTR ERVL 394 439 -171 302 210 32 0 chr1 273880648 273880710 -8312954 + L1MC4 LINE L1 6652 6715 -1327 403 280 147 24 chr1 273881608 273881872 -8311792 + L1ME3A LINE L1 924 1220 -5176 321 346 88 0 chr1 273881932 273882137 -8311527 + MIR SINE MIR 40 262 0 459 0 0 0 chr1 273882501 273882552 -8311112 + (CA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr1 273883067 273883089 -8310575 + AT_rich Low_complexity Low_complexity 1 22 0 790 290 75 53 chr1 273883122 273883602 -8310062 + MLT1G LTR MaLR 10 500 -42 235 377 70 9 chr1 273883792 273883906 -8309758 + MIR SINE MIR 31 151 -111 1944 290 115 40 chr1 273884789 273887432 -8306232 + L1ME3A LINE L1 2745 5585 -821 2228 119 3 0 chr1 273887441 273887752 -8305912 + AluSx SINE Alu 1 312 0 1079 307 97 23 chr1 273887867 273888610 -8305054 + L1ME3A LINE L1 5633 6430 0 304 274 129 16 chr1 273888694 273888818 -8304846 - Charlie8 DNA MER1_type -2181 236 99 265 299 62 21 chr1 273890354 273890498 -8303166 + HAL1 LINE L1 1425 1574 -933 2245 65 27 3 chr1 273892787 273893080 -8300584 + AluY SINE Alu 1 300 -11 180 0 0 0 chr1 273893082 273893102 -8300562 + (TA)n Simple_repeat Simple_repeat 1 20 0 204 283 0 0 chr1 273893168 273893214 -8300450 + GA-rich Low_complexity Low_complexity 3 48 0 310 369 104 18 chr1 273893215 273893437 -8300227 + L1MEd LINE L1 143 383 -5736 1552 176 7 29 chr1 273893526 273893832 -8299832 - AluJo SINE Alu -13 299 1 1460 231 26 15 chr1 273893903 273894245 -8299419 - MER4D LTR ERV1 -7 896 551 1191 213 59 15 chr1 273894277 273894550 -8299114 - MER49 LTR ERV1 -638 285 1 278 243 37 19 chr1 273894705 273894812 -8298852 - L1ME LINE L1 -5901 169 61 2239 65 0 48 chr1 273894856 273895165 -8298499 - AluY SINE Alu -17 294 1 21 36 0 0 chr1 273895790 273895818 -8297846 + AT_rich Low_complexity Low_complexity 1 28 0 388 312 85 72 chr1 273896373 273896761 -8296903 - LTR67 LTR ERVL -163 394 2 1860 83 33 0 chr1 273897291 273897582 -8296082 + AluSc SINE Alu 30 328 0 250 398 18 9 chr1 273898901 273899014 -8294650 + MIR SINE MIR 33 146 -62 592 317 58 0 chr1 273899343 273899548 -8294116 + MLT1H LTR MaLR 14 230 -319 31 0 0 24 chr1 273899874 273899891 -8293773 + AT_rich Low_complexity Low_complexity 1 17 -24 1697 178 0 17 chr1 273899891 273900184 -8293480 + AluJb SINE Alu 1 288 -24 31 0 0 24 chr1 273900184 273900208 -8293456 + AT_rich Low_complexity Low_complexity 17 41 0 239 0 32 0 chr1 273900305 273900336 -8293328 + (TA)n Simple_repeat Simple_repeat 2 33 0 717 196 64 64 chr1 273900693 273900928 -8292736 - L1M4c LINE L1 -4508 2138 1904 * 1883 235 79 24 chr1 273900924 273901579 -8292085 - L1M4c LINE L1 -4978 1564 870 2833 178 60 3 chr1 273901579 273902180 -8291484 + LTR24C LTR ERV1 1 635 0 1883 235 79 24 chr1 273902180 273902197 -8291467 - L1M4c LINE L1 -5672 870 855 207 0 0 0 chr1 273902200 273902223 -8291441 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 1942 124 0 4 chr1 273902227 273902501 -8291163 - AluSg SINE Alu -37 273 1 319 286 146 17 chr1 273902616 273902794 -8290870 - L1M4c LINE L1 -5731 811 611 21 36 0 0 chr1 273902875 273902903 -8290761 + AT_rich Low_complexity Low_complexity 1 28 0 249 253 0 0 chr1 273903007 273903094 -8290570 + (TA)n Simple_repeat Simple_repeat 2 88 0 300 291 25 0 chr1 273903554 273903633 -8290031 - L1M4c LINE L1 -6275 267 187 2483 51 0 0 chr1 273903727 273904022 -8289642 + AluY SINE Alu 3 297 -14 21 36 0 0 chr1 273904163 273904191 -8289473 + AT_rich Low_complexity Low_complexity 1 28 0 229 102 0 82 chr1 273904293 273904342 -8289322 - LTR66 LTR ERVL -168 442 398 192 125 0 0 chr1 273904350 273904382 -8289282 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr1 273904581 273904615 -8289049 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr1 273905032 273905055 -8288609 + (T)n Simple_repeat Simple_repeat 1 23 0 2118 174 23 9 chr1 273905140 273905576 -8288088 - L1 LINE L1 -1735 4411 3970 3325 179 26 13 chr1 273905576 273905751 -8287913 + L1MA5 LINE L1 5614 5785 -515 501 125 0 0 chr1 273905751 273905831 -8287833 - MADE1 DNA Mariner 0 80 1 3325 179 26 13 chr1 273905831 273906331 -8287333 + L1MA5 LINE L1 5785 6300 0 694 380 76 23 chr1 273907212 273907685 -8285979 - L3 LINE CR1 -34 1543 1046 1693 162 19 91 chr1 273908160 273908580 -8285084 + MLT1B LTR MaLR 1 390 0 631 312 5 11 chr1 273908715 273908904 -8284760 - ERVL LTR ERVL -1462 4302 4115 273 252 46 76 chr1 273908912 273909043 -8284621 + MLT1J2 LTR MaLR 57 183 -267 454 357 47 12 chr1 273909048 273909440 -8284224 - ERVL LTR ERVL -1669 3985 3588 2323 158 22 31 chr1 273909515 273909964 -8283700 - MER65A LTR ERV1 0 445 1 793 344 59 47 chr1 273910094 273910734 -8282930 - ERVL LTR ERVL -2734 3030 2383 377 80 0 0 chr1 273910887 273910937 -8282727 - 5S rRNA rRNA -71 50 1 350 335 11 44 chr1 273911946 273912128 -8281536 - LTR16A LTR ERVL -219 231 56 323 347 54 6 chr1 273912206 273912373 -8281291 - L1ME3A LINE L1 -219 5951 5777 190 302 167 0 chr1 273912955 273913051 -8280613 - L3 LINE CR1 -898 679 568 23 54 0 0 chr1 273914176 273914213 -8279451 + AT_rich Low_complexity Low_complexity 1 37 0 8905 201 46 55 chr1 273914811 273914918 -8278746 + L1PA13 LINE L1 1826 1932 -4865 2088 67 7 14 chr1 273914918 273915201 -8278463 + AluY SINE Alu 1 281 -30 207 0 0 0 chr1 273915209 273915232 -8278432 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8905 201 46 55 chr1 273915232 273916153 -8277511 + L1PA13 LINE L1 1939 2867 -3930 380 149 122 14 chr1 273916153 273916227 -8277437 + AluSc SINE Alu 1 82 -217 8905 201 46 55 chr1 273916227 273917631 -8276033 + L1PA13 LINE L1 2867 4336 -2461 207 0 0 0 chr1 273917631 273917654 -8276010 + (CA)n Simple_repeat Simple_repeat 2 24 0 8905 201 46 55 chr1 273917654 273917916 -8275748 + L1PA13 LINE L1 4336 4599 -2198 6541 123 155 82 chr1 273917916 273919495 -8274169 - pTR5 LTR ERV1 -1 2437 743 5066 199 13 12 chr1 273919496 273920581 -8273083 + L1PA13 LINE L1 4593 5678 -1119 1910 175 0 0 chr1 274120599 274120896 -8072768 - AluJo SINE Alu -15 297 1 492 256 42 21 chr1 274121381 274121525 -8072139 - L1MD3 LINE L1 -1 8041 7883 260 352 9 9 chr1 274123394 274123499 -8070165 - L2 LINE L2 0 3272 3168 1555 242 137 27 chr1 274123934 274124422 -8069242 + MLT1F LTR MaLR 1 542 0 373 323 43 24 chr1 274124560 274124724 -8068940 - MIR SINE MIR -6 256 90 379 272 31 46 chr1 274125107 274125302 -8068362 + L1M4 LINE L1 3697 3888 -2258 1307 270 45 14 chr1 274125379 274125824 -8067840 + Charlie1b DNA MER1_type 52 510 -13 259 287 24 75 chr1 274126667 274126820 -8066844 + MIR SINE MIR 16 155 -107 2810 117 60 2 chr1 274126820 274127223 -8066441 + MSTB LTR MaLR 1 426 0 259 287 24 75 chr1 274127223 274127269 -8066395 + MIR SINE MIR 155 202 -60 365 319 51 7 chr1 274127317 274127455 -8066209 + MIR SINE MIR 14 157 -105 11555 140 39 17 chr1 274127456 274129354 -8064310 + Tigger1 DNA MER2_type 2 1940 -478 214 146 12 61 chr1 274129463 274129545 -8064119 + G-rich Low_complexity Low_complexity 5 82 0 231 329 12 0 chr1 274129558 274129640 -8064024 + G-rich Low_complexity Low_complexity 1 83 0 3606 177 12 5 chr1 274129643 274130286 -8063378 + Tigger1 DNA MER2_type 1770 2417 -1 214 304 63 0 chr1 274130289 274130368 -8063296 + MIR SINE MIR 159 242 -20 2490 43 13 0 chr1 274131406 274131710 -8061954 + AluY SINE Alu 1 308 -3 335 354 29 45 chr1 274132446 274132760 -8060904 - L3 LINE CR1 -265 1312 1004 2610 186 50 4 chr1 274133443 274133963 -8059701 - L1MC2 LINE L1 -14 6330 5787 763 71 10 0 chr1 274133963 274134062 -8059602 + THE1C LTR MaLR 9 108 -267 198 339 15 0 chr1 274134253 274134318 -8059346 - L2 LINE L2 -2 3270 3205 281 282 0 28 chr1 274134337 274134408 -8059256 + MIR SINE MIR 16 84 -178 1749 208 25 12 chr1 274134437 274134840 -8058824 - L1MC2 LINE L1 -915 5231 4824 712 187 75 19 chr1 274134837 274135051 -8058613 - L1MC2 LINE L1 -1610 4536 4311 * 243 185 19 0 chr1 274135048 274135102 -8058562 - L1MB7 LINE L1 -11 6173 6119 * 408 143 33 66 chr1 274135101 274135192 -8058472 + L1M4 LINE L1 61 148 -6394 642 183 22 0 chr1 274135457 274135594 -8058070 + L1M4 LINE L1 5462 5601 -1043 2068 127 27 0 chr1 274135831 274136123 -8057541 - AluSx SINE Alu -12 300 1 2414 62 0 37 chr1 274136143 274136465 -8057199 - AluY SINE Alu -1 310 1 2318 49 0 11 chr1 274138181 274138492 -8055172 + AluY SINE Alu 1 308 0 496 308 102 42 chr1 274138742 274139322 -8054342 - L1ME3A LINE L1 -290 5880 5264 1873 124 7 7 chr1 274139326 274139599 -8054065 - AluSx SINE Alu -20 292 20 5772 151 41 20 chr1 274140083 274140679 -8052985 + L1MA8 LINE L1 4133 4715 -1576 2479 81 0 0 chr1 274140679 274140987 -8052677 + AluSc SINE Alu 1 308 -1 5772 151 41 20 chr1 274140987 274142167 -8051497 + L1MA8 LINE L1 4715 5949 -342 2104 111 35 0 chr1 274143224 274143512 -8050152 - AluSx SINE Alu -12 300 3 343 291 115 26 chr1 274143551 274144056 -8049608 + L1M4 LINE L1 2740 3289 -2857 243 250 0 0 chr1 274144065 274144117 -8049547 + CT-rich Low_complexity Low_complexity 3 54 0 2280 85 0 31 chr1 274144479 274144797 -8048867 + AluSc SINE Alu 1 308 -1 412 183 49 0 chr1 274145106 274145188 -8048476 + L1MC4 LINE L1 6458 6543 -1499 1767 163 25 0 chr1 274145188 274145470 -8048194 + AluSg SINE Alu 1 289 -21 292 136 15 15 chr1 274145472 274145538 -8048126 + GA-rich Low_complexity Low_complexity 3 68 0 1630 135 0 0 chr1 274145757 274145987 -8047677 - AluSx SINE Alu -30 282 53 30 0 0 0 chr1 274146732 274146762 -8046902 + AT_rich Low_complexity Low_complexity 1 30 0 1750 122 8 4 chr1 274146983 274147237 -8046427 + AluSc SINE Alu 1 255 -54 1120 132 6 0 chr1 274148682 274148856 -8044808 + AluSg/x SINE Alu 135 309 -1 2301 99 3 0 chr1 274149059 274149363 -8044301 - AluSx SINE Alu -7 305 1 4916 138 68 17 chr1 274149943 274151008 -8042656 + pTR5 LTR ERV1 743 2025 -413 325 247 32 0 chr1 274151008 274151101 -8042563 + LTR30 LTR ERV1 544 639 -83 1485 104 5 5 chr1 274151108 274151329 -8042335 + pTR5 LTR ERV1 172 392 -2046 396 22 0 0 chr1 274151414 274151459 -8042205 + LTR7 LTR ERV1 406 450 0 1729 146 29 4 chr1 274152017 274152297 -8041367 + AluSx SINE Alu 1 287 -25 283 78 65 26 chr1 274152320 274152397 -8041267 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 234 0 0 0 chr1 274152699 274152725 -8040939 + (CA)n Simple_repeat Simple_repeat 2 27 0 1602 188 0 3 chr1 274152725 274153022 -8040642 - AluJb SINE Alu -14 298 1 336 256 305 6 chr1 274154096 274154260 -8039404 - MIR SINE MIR -25 237 25 2046 142 0 0 chr1 274154507 274154809 -8038855 + AluSx SINE Alu 1 302 -10 289 197 45 15 chr1 274155167 274155233 -8038431 + LTR67 LTR ERVL 487 554 -3 1596 107 152 0 chr1 274155287 274155552 -8038112 + AluSg SINE Alu 1 302 0 202 210 0 188 chr1 274156247 274156385 -8037279 - MIR SINE MIR -51 211 100 416 289 11 14 chr1 274156468 274156600 -8037064 - MIR SINE MIR -54 154 30 540 260 159 26 chr1 274156689 274156916 -8036748 + HsTC2b DNA Tc2 38 294 -621 897 163 0 0 chr1 274156921 274157056 -8036608 + FLAM_C SINE Alu 1 135 -8 2073 133 3 0 chr1 274157059 274157361 -8036303 + AluSx SINE Alu 1 303 -9 35 24 0 0 chr1 274157364 274157406 -8036258 + AT_rich Low_complexity Low_complexity 1 42 0 822 176 0 0 chr1 274157408 274157539 -8036125 + AluJb SINE Alu 148 278 -34 1313 209 80 45 chr1 274157555 274157995 -8035669 + HsTC2b DNA Tc2 290 920 0 1040 175 0 0 chr1 274159252 274159429 -8034235 + AluJb SINE Alu 136 312 0 510 31 0 46 chr1 274159528 274159593 -8034071 - AluSc SINE Alu -15 294 233 2147 106 10 0 chr1 274160240 274160533 -8033131 + AluSp SINE Alu 1 296 -17 2375 54 10 0 chr1 274160932 274161228 -8032436 + AluY SINE Alu 1 299 -12 2331 107 0 3 chr1 274161639 274161948 -8031716 - AluSg SINE Alu -2 308 1 1722 173 27 7 chr1 274162733 274163028 -8030636 + AluJo SINE Alu 1 301 -11 224 374 0 0 chr1 274163049 274163140 -8030524 + MIR SINE MIR 64 154 -108 1598 121 155 8 chr1 274163289 274163554 -8030110 - AluSx SINE Alu -8 304 1 1794 148 48 7 chr1 274163890 274164180 -8029484 - AluJo SINE Alu 0 312 11 774 143 0 0 chr1 274164353 274164472 -8029192 - L1MA4 LINE L1 -5 6295 6177 1976 86 10 55 chr1 274164713 274165004 -8028660 + AluSq SINE Alu 23 300 -13 989 193 37 70 chr1 274165405 274165675 -8027989 + MLT2B1 LTR ERVL 6 266 -254 748 210 97 34 chr1 274165794 274166159 -8027505 + L1MD3 LINE L1 6637 6978 -1064 2157 107 3 0 chr1 274166159 274166449 -8027215 + AluSq SINE Alu 1 291 -22 748 210 97 34 chr1 274166449 274166550 -8027114 + L1MD3 LINE L1 6978 7071 -971 2185 137 33 16 chr1 274166550 274166916 -8026748 - THE1C LTR MaLR -3 372 1 748 210 97 34 chr1 274166916 274167002 -8026662 + L1MD3 LINE L1 7071 7357 -685 236 130 65 0 chr1 274167068 274167114 -8026550 + MLT2B1 LTR ERVL 456 504 -11 2270 232 31 31 chr1 274167131 274167639 -8026025 - MLT2B3 LTR ERVL -46 508 1 1912 229 56 4 chr1 274167657 274168141 -8025523 + L1MC4 LINE L1 7390 7898 -144 271 274 29 10 chr1 274168348 274168450 -8025214 + L1MEd LINE L1 59 162 -5957 406 275 115 66 chr1 274168476 274168987 -8024677 + L1M4 LINE L1 4224 4760 -1386 1559 149 67 47 chr1 274169170 274169193 -8024471 - L1MA8 LINE L1 0 6291 6270 2072 131 0 7 chr1 274169193 274169491 -8024173 + AluSx SINE Alu 1 296 -16 1559 149 67 47 chr1 274169491 274169810 -8023854 - L1MA8 LINE L1 -21 6270 5942 2463 84 0 0 chr1 274169810 274170107 -8023557 - AluSg SINE Alu -13 297 1 857 139 0 16 chr1 274170523 274170652 -8023012 - FLAM_C SINE Alu -16 127 1 1611 183 156 5 chr1 274171535 274171907 -8021757 - MSTC LTR MaLR 0 428 1 898 276 100 28 chr1 274177887 274178254 -8015410 + MER34 LTR ERV1 20 490 -95 2320 96 0 0 chr1 274178254 274178546 -8015118 - AluSq SINE Alu -20 293 2 898 276 100 28 chr1 274178546 274178650 -8015014 + MER34 LTR ERV1 490 585 0 489 268 105 37 chr1 274178650 274178840 -8014824 + MIR SINE MIR 58 260 -2 1159 164 164 13 chr1 274178847 274179146 -8014518 - MER2 DNA MER2_type 0 344 1 198 167 0 0 chr1 274179931 274179967 -8013697 + GA-rich Low_complexity Low_complexity 1 36 0 2238 80 45 0 chr1 274181087 274181374 -8012290 + AluSq SINE Alu 1 300 -13 1487 209 40 0 chr1 274181635 274181931 -8011733 - MLT1A1 LTR MaLR 0 365 58 263 139 0 0 chr1 274181931 274181974 -8011690 - MLT1A1 LTR MaLR -259 106 64 302 164 0 0 chr1 274181974 274182029 -8011635 - MLT1A1 LTR MaLR -253 112 58 302 164 0 0 chr1 274182023 274182078 -8011586 - MLT1A1 LTR MaLR -253 112 58 * 305 164 0 0 chr1 274182072 274182127 -8011537 - MLT1A1 LTR MaLR -253 112 58 302 164 0 0 chr1 274182121 274182176 -8011488 - MLT1A1 LTR MaLR -253 112 58 * 305 164 0 0 chr1 274182170 274182225 -8011439 - MLT1A1 LTR MaLR -253 112 58 305 164 0 0 chr1 274182219 274182274 -8011390 - MLT1A1 LTR MaLR -253 112 58 * 520 195 0 51 chr1 274182268 274182386 -8011278 - MLT1A1 LTR MaLR -253 112 1 2315 96 0 3 chr1 274182604 274182907 -8010757 - AluSc SINE Alu -7 302 1 640 154 52 15 chr1 274183039 274183175 -8010489 + MLT1A1 LTR MaLR 1 141 -224 342 0 0 0 chr1 274183175 274183213 -8010451 + (TG)n Simple_repeat Simple_repeat 1 38 0 513 90 0 0 chr1 274183215 274183282 -8010382 - AluSx SINE Alu -37 275 209 1399 130 10 0 chr1 274183323 274183530 -8010134 - AluSx SINE Alu -103 209 1 1276 172 0 25 chr1 274183530 274183768 -8009896 + MLT1A1 LTR MaLR 132 363 -2 456 220 85 0 chr1 274183774 274183919 -8009745 + MIR SINE MIR 104 260 -2 2240 100 23 0 chr1 274184240 274184541 -8009123 + AluSx SINE Alu 1 308 -4 2417 80 0 3 chr1 274184709 274185008 -8008656 + AluSc SINE Alu 1 298 -11 2175 103 3 3 chr1 274185399 274185700 -8007964 + AluSx SINE Alu 1 301 -11 2353 98 0 0 chr1 274185808 274186103 -8007561 + AluSx SINE Alu 1 295 -17 1888 166 3 10 chr1 274186501 274186797 -8006867 - AluJb SINE Alu -18 294 1 1995 147 6 13 chr1 274187689 274188003 -8005661 + AluSx SINE Alu 1 312 0 2086 105 0 37 chr1 274188244 274188571 -8005093 + AluSq SINE Alu 1 316 0 2271 77 0 20 chr1 274188709 274189007 -8004657 + AluY SINE Alu 1 292 -19 21 36 0 0 chr1 274189008 274189036 -8004628 + AT_rich Low_complexity Low_complexity 1 28 0 309 202 61 18 chr1 274190775 274190889 -8002775 - MER112 DNA MER1_type -35 225 107 260 256 0 44 chr1 274190899 274190989 -8002675 + (CATA)n Simple_repeat Simple_repeat 3 88 0 368 115 0 0 chr1 274191006 274191058 -8002606 + MER66B LTR ERV1 295 346 -140 24 0 0 0 chr1 274191059 274191083 -8002581 + AT_rich Low_complexity Low_complexity 1 24 0 355 326 29 11 chr1 274191281 274191456 -8002208 - L1ME LINE L1 -462 5659 5482 255 383 78 31 chr1 274191888 274192442 -8001222 + L3 LINE CR1 614 1193 -384 737 255 21 27 chr1 274192800 274192988 -8000676 + MER5A DNA MER1_type 1 187 -2 1183 111 0 0 chr1 274193206 274193359 -8000305 + AluSx SINE Alu 1 153 -159 7222 91 5 18 chr1 274193361 274194432 -7999232 + MER11C LTR ERVK 1 1057 -14 962 180 0 0 chr1 274194447 274194643 -7999021 + AluSx SINE Alu 148 312 0 697 154 7 59 chr1 274194675 274194811 -7998853 - FLAM_C SINE Alu -4 129 1 695 287 117 62 chr1 274194839 274195180 -7998484 + L3 LINE CR1 1218 1577 0 281 293 122 16 chr1 274197130 274197253 -7996411 + L2 LINE L2 3167 3302 -11 234 0 0 0 chr1 274197937 274197963 -7995701 + (TA)n Simple_repeat Simple_repeat 2 27 0 2357 77 0 10 chr1 274197963 274198262 -7995402 - AluY SINE Alu -15 296 1 2376 85 3 7 chr1 274199251 274199558 -7994106 + AluSp SINE Alu 1 306 -7 424 299 56 25 chr1 274199980 274200177 -7993487 + L1ME4a LINE L1 5721 5923 -198 200 330 10 78 chr1 274200241 274200280 -7993384 - MIR SINE MIR -123 139 99 718 182 0 8 chr1 274200280 274200437 -7993227 - FLAM_C SINE Alu 0 133 1 200 330 10 78 chr1 274200437 274200500 -7993164 - MIR SINE MIR -163 99 44 1944 135 4 4 chr1 274200754 274201059 -7992605 + AluSx SINE Alu 1 305 0 2235 118 0 0 chr1 274201705 274202001 -7991663 - AluSq SINE Alu -16 297 2 682 188 176 0 chr1 274202683 274202853 -7990811 + MER3 DNA MER1_type 7 206 -3 341 281 219 0 chr1 274204881 274205027 -7988637 + MIR SINE MIR 67 244 -18 650 223 181 0 chr1 274205038 274205204 -7988460 - MIR SINE MIR -30 232 37 181 286 95 12 chr1 274205337 274205421 -7988243 - L3b LINE CR1 -70 1513 1423 1608 155 36 32 chr1 274205866 274206171 -7987493 + AluJo SINE Alu 5 310 0 241 232 27 143 chr1 274206593 274206795 -7986869 + MIR SINE MIR 8 193 -62 197 178 22 0 chr1 274206970 274207015 -7986649 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 349 407 20 16 chr1 274207148 274207401 -7986263 + L2 LINE L2 2937 3190 -82 2012 134 7 13 chr1 274207562 274207868 -7985796 - AluSx SINE Alu -8 304 1 526 229 144 47 chr1 274209338 274209546 -7984118 - MIR SINE MIR 0 262 27 2252 117 0 0 chr1 274209546 274209853 -7983811 - AluSq SINE Alu -5 308 2 526 229 144 47 chr1 274209853 274209880 -7983784 - MIR SINE MIR -235 27 4 230 386 23 45 chr1 274209898 274210030 -7983634 + MIR3 SINE MIR 14 142 -66 23 33 0 0 chr1 274211278 274211308 -7982356 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1 274212771 274212792 -7980872 + AT_rich Low_complexity Low_complexity 1 21 0 2384 103 0 0 chr1 274213956 274214257 -7979407 - AluSx SINE Alu -11 301 1 228 111 0 0 chr1 274214557 274214593 -7979071 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 424 355 29 22 chr1 274214593 274214731 -7978933 - L2 LINE L2 -17 3255 3117 2290 178 60 0 chr1 274214939 274215421 -7978243 + L1MA6 LINE L1 5784 6294 -6 23 33 0 0 chr1 274215561 274215591 -7978073 + AT_rich Low_complexity Low_complexity 1 30 0 2085 140 3 0 chr1 274215813 274216113 -7977551 + AluSc SINE Alu 1 301 -8 2176 157 6 6 chr1 274216841 274217204 -7976460 + MLT1A1 LTR MaLR 1 363 -2 2124 115 3 7 chr1 274217525 274217820 -7975844 + AluSx SINE Alu 1 294 -18 1336 156 8 4 chr1 274218333 274218576 -7975088 + MLT2D LTR ERVL 1 244 -170 27 49 0 0 chr1 274219089 274219130 -7974534 + AT_rich Low_complexity Low_complexity 1 41 0 570 168 30 132 chr1 274220076 274220273 -7973391 + MLT2D LTR ERVL 238 414 0 1094 214 44 98 chr1 274221079 274221486 -7972178 + MLT1B LTR MaLR 1 385 -5 202 356 40 0 chr1 274221577 274221678 -7971986 + L2 LINE L2 3209 3313 0 2475 88 0 3 chr1 274223980 274224288 -7969376 + AluSq SINE Alu 1 307 -6 228 217 0 22 chr1 274224683 274224759 -7968905 + G-rich Low_complexity Low_complexity 1 74 0 2079 102 7 3 chr1 274224906 274225213 -7968451 + AluSq SINE Alu 1 308 0 287 283 20 20 chr1 274225782 274225881 -7967783 - MER5B DNA MER1_type -79 99 1 753 219 7 7 chr1 274226051 274226197 -7967467 + FRAM SINE Alu 1 146 -30 2356 101 0 3 chr1 274228030 274228336 -7965328 - AluSq SINE Alu -8 305 1 2863 151 14 54 chr1 274229279 274229849 -7963815 - MER44D DNA MER2_type -3 602 1 254 204 0 0 chr1 274229854 274229903 -7963761 + Tigger5 DNA MER2_type 2 50 -2273 548 149 0 0 chr1 274229918 274230005 -7963659 + Tigger5 DNA MER2_type 2237 2323 0 1585 172 0 22 chr1 274230219 274230486 -7963178 - AluJo SINE Alu -51 261 1 2431 63 0 3 chr1 274230907 274231210 -7962454 - AluY SINE Alu -9 302 1 404 250 31 0 chr1 274231211 274231307 -7962357 - L2 LINE L2 -531 2783 2685 360 0 0 0 chr1 274231316 274231356 -7962308 + (CA)n Simple_repeat Simple_repeat 1 40 0 5673 147 43 22 chr1 274231356 274232666 -7960998 + L1MC1 LINE L1 4987 6332 -1 731 243 130 51 chr1 274232705 274232981 -7960683 - L2 LINE L2 -637 2677 2380 1961 190 6 3 chr1 274234451 274234814 -7958850 - MLT1A1 LTR MaLR 0 365 2 2115 105 16 13 chr1 274235157 274235461 -7958203 - AluY SINE Alu -6 305 1 1108 304 30 61 chr1 274236189 274236666 -7956998 + L2 LINE L2 2339 3008 -305 2214 106 3 7 chr1 274236666 274236969 -7956695 - AluSg SINE Alu -8 302 1 1108 304 30 61 chr1 274236969 274237266 -7956398 + L2 LINE L2 3008 3313 0 210 118 0 0 chr1 274237331 274237365 -7956299 + (TG)n Simple_repeat Simple_repeat 1 34 0 358 292 33 17 chr1 274238060 274238180 -7955484 - L3 LINE CR1 -6 1571 1450 188 323 110 32 chr1 274238335 274238490 -7955174 + MIR SINE MIR 90 256 -6 2346 85 24 0 chr1 274238596 274238889 -7954775 - AluSx SINE Alu -12 300 1 338 117 33 0 chr1 274239133 274239193 -7954471 + CT-rich Low_complexity Low_complexity 3 64 0 2338 98 3 9 chr1 274239278 274239593 -7954071 + AluSq SINE Alu 1 313 0 1693 150 81 3 chr1 274239719 274240152 -7953512 - L1MC/D LINE L1 -743 5403 5127 3495 262 26 31 chr1 274240163 274240587 -7953077 - L1MC/D LINE L1 -2253 3893 3468 832 131 0 23 chr1 274240587 274240717 -7952947 - FLAM_C SINE Alu -6 127 1 3495 262 26 31 chr1 274240717 274241968 -7951696 - L1MC/D LINE L1 -2678 3468 2300 220 337 82 44 chr1 274242134 274242428 -7951236 + L2 LINE L2 2150 2454 -860 276 374 73 31 chr1 274242953 274243375 -7950289 - L3 LINE CR1 -173 1404 965 318 26 0 0 chr1 274244343 274244382 -7949282 + (TG)n Simple_repeat Simple_repeat 2 40 0 1177 166 47 5 chr1 274244383 274244576 -7949088 - AluJo SINE Alu -25 287 87 24 32 0 0 chr1 274244576 274244607 -7949057 + AT_rich Low_complexity Low_complexity 1 31 0 2255 116 0 3 chr1 274244607 274244918 -7948746 + AluSx SINE Alu 1 310 -2 251 313 72 0 chr1 274245553 274245636 -7948028 + L2 LINE L2 3148 3236 -36 304 333 130 11 chr1 274246488 274246665 -7946999 - MIR SINE MIR -56 206 9 2518 57 0 0 chr1 274247645 274247943 -7945721 + AluY SINE Alu 1 298 -13 23 54 0 0 chr1 274248764 274248801 -7944863 + AT_rich Low_complexity Low_complexity 1 37 0 1713 188 13 3 chr1 274249134 274249443 -7944221 + AluSx SINE Alu 1 312 0 794 142 30 0 chr1 274249455 274249624 -7944040 + GA-rich Low_complexity Low_complexity 2 175 0 2303 111 0 0 chr1 274251073 274251370 -7942294 + AluSq SINE Alu 1 297 -16 1611 154 3 45 chr1 274251759 274252051 -7941613 - AluJo SINE Alu -20 292 13 21 0 0 0 chr1 274252056 274252077 -7941587 + AT_rich Low_complexity Low_complexity 1 21 0 224 151 38 38 chr1 274253557 274253610 -7940054 + L2 LINE L2 3261 3313 0 1020 168 0 22 chr1 274253725 274253904 -7939760 + FRAM SINE Alu 1 174 -2 2085 132 0 7 chr1 274254212 274254522 -7939142 + AluSg SINE Alu 1 308 -2 1081 238 9 0 chr1 274255412 274255643 -7938021 + MLT1A1 LTR MaLR 85 317 -48 26 30 0 0 chr1 274255981 274256014 -7937650 + AT_rich Low_complexity Low_complexity 1 33 0 4802 157 27 22 chr1 274256014 274256174 -7937490 - L1MA8 LINE L1 -6 6285 6127 2288 115 0 3 chr1 274256174 274256488 -7937176 + AluSq SINE Alu 1 313 0 4802 157 27 22 chr1 274256488 274257320 -7936344 - L1MA8 LINE L1 -164 6127 5288 1936 141 7 14 chr1 274258095 274258386 -7935278 + AluSx SINE Alu 1 289 -23 260 202 10 30 chr1 274258666 274258765 -7934899 + (TA)n Simple_repeat Simple_repeat 2 98 0 288 281 72 58 chr1 274258995 274259273 -7934391 - L1ME LINE L1 -282 5839 5558 389 190 53 115 chr1 274259311 274259537 -7934127 + L2 LINE L2 2665 2876 -438 475 252 17 0 chr1 274259723 274259842 -7933822 + L2 LINE L2 3188 3308 -5 288 130 0 0 chr1 274259875 274259921 -7933743 + (T)n Simple_repeat Simple_repeat 1 46 0 362 269 77 87 chr1 274260146 274260399 -7933265 - L1ME3 LINE L1 -205 5916 5678 1728 179 7 3 chr1 274261459 274261756 -7931908 - AluJo SINE Alu -14 298 1 2876 50 0 3 chr1 274262565 274262926 -7930738 + L1PA6 LINE L1 5793 6152 -2 21 0 0 0 chr1 274263067 274263088 -7930576 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr1 274263154 274263192 -7930472 + AT_rich Low_complexity Low_complexity 1 38 0 1999 129 10 10 chr1 274263335 274263630 -7930034 - AluSx SINE Alu -17 295 1 225 299 95 29 chr1 274263834 274263971 -7929693 - MIR SINE MIR -57 205 60 2136 34 0 0 chr1 274264329 274264597 -7929067 - L1PA4 LINE L1 -173 5982 5715 1385 36 0 0 chr1 274264597 274264757 -7928907 + L1PA4 LINE L1 5986 6153 -2 2723 220 22 16 chr1 274264918 274265211 -7928453 - MER82 DNA MER2_type -5 648 358 2535 78 0 3 chr1 274265211 274265520 -7928144 + AluSq SINE Alu 3 310 -3 2723 220 22 16 chr1 274265520 274265866 -7927798 - MER82 DNA MER2_type -295 358 5 6043 99 11 3 chr1 274265920 274267324 -7926340 + L1PA14 LINE L1 4739 6152 -9 237 318 80 69 chr1 274268301 274268468 -7925196 + MIR SINE MIR 9 185 -63 2372 59 0 0 chr1 274268642 274268928 -7924736 - AluY SINE Alu -10 301 16 28 61 0 0 chr1 274269115 274269164 -7924500 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr1 274269215 274269247 -7924417 + AT_rich Low_complexity Low_complexity 1 32 0 275 263 246 0 chr1 274269411 274269525 -7924139 - L2 LINE L2 -4 3309 3168 500 313 74 16 chr1 274270008 274270251 -7923413 - MIR SINE MIR 0 262 6 2260 93 0 3 chr1 274270369 274270671 -7922993 - AluSx SINE Alu -10 302 2 2309 96 0 0 chr1 274271574 274271866 -7921798 - AluSc SINE Alu -17 292 1 272 261 0 45 chr1 274271887 274272021 -7921643 + (TAA)n Simple_repeat Simple_repeat 3 130 0 788 241 51 14 chr1 274272021 274272237 -7921427 - MIR SINE MIR 0 262 39 236 108 0 0 chr1 274272327 274272364 -7921300 - MADE1 DNA Mariner -43 37 1 201 295 82 77 chr1 274272481 274272664 -7921000 + MIR SINE MIR 29 212 -50 22 0 0 0 chr1 274272968 274272990 -7920674 + AT_rich Low_complexity Low_complexity 1 22 0 254 315 87 20 chr1 274272995 274273144 -7920520 - L2 LINE L2 0 3313 3155 2030 163 70 0 chr1 274273948 274274317 -7919347 + MER57A LTR ERV1 8 402 -1 314 359 53 23 chr1 274274410 274274541 -7919123 - L2 LINE L2 0 3272 3138 481 271 79 22 chr1 274275719 274275948 -7917716 - L1MEd LINE L1 -4877 1242 1001 24 85 0 0 chr1 274276099 274276158 -7917506 + AT_rich Low_complexity Low_complexity 1 59 0 2019 139 74 17 chr1 274276323 274276675 -7916989 + MSTA LTR MaLR 1 372 -56 207 0 0 0 chr1 274276680 274276703 -7916961 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 40791 67 5 2 chr1 274276703 274282814 -7910850 - L1PA5 LINE L1 0 6154 31 384 196 82 10 chr1 274282814 274282911 -7910753 + MSTA LTR MaLR 323 426 0 23 54 0 0 chr1 274283772 274283809 -7909855 + AT_rich Low_complexity Low_complexity 1 37 0 260 179 0 71 chr1 274284009 274284065 -7909599 - AluJb SINE Alu -176 126 75 320 301 30 0 chr1 274284149 274284282 -7909382 + L1ME4a LINE L1 5767 5903 -218 1061 175 14 28 chr1 274284635 274284846 -7908818 + MER3 DNA MER1_type 1 208 -1 38 61 0 0 chr1 274284893 274284959 -7908705 + AT_rich Low_complexity Low_complexity 1 66 0 2536 143 26 0 chr1 274285043 274285464 -7908200 + MSTB1 LTR MaLR 1 432 0 28 48 0 0 chr1 274285615 274285657 -7908007 + AT_rich Low_complexity Low_complexity 1 42 0 376 313 26 9 chr1 274286916 274287031 -7906633 - MIR SINE MIR -126 136 20 204 230 27 54 chr1 274287250 274287324 -7906340 + L2 LINE L2 3235 3306 -7 291 329 43 21 chr1 274288426 274288566 -7905098 + MIR3 SINE MIR 57 199 -9 265 130 43 87 chr1 274288772 274288887 -7904777 + A-rich Low_complexity Low_complexity 3 112 0 23 0 0 0 chr1 274289375 274289398 -7904266 + AT_rich Low_complexity Low_complexity 1 23 0 2025 68 4 0 chr1 274289505 274289769 -7903895 + L1PA6 LINE L1 5882 6146 -8 22 35 0 0 chr1 274289769 274289798 -7903866 + AT_rich Low_complexity Low_complexity 1 29 0 2677 121 16 14 chr1 274291711 274292143 -7901521 + L1MA5A LINE L1 5852 6287 -10 1736 130 54 7 chr1 274292143 274292419 -7901245 - AluSg SINE Alu -21 289 1 2677 121 16 14 chr1 274292419 274292431 -7901233 + L1MA5A LINE L1 6287 6297 0 419 347 40 22 chr1 274292789 274293014 -7900650 + L2 LINE L2 2071 2299 -1015 247 337 90 34 chr1 274293139 274293276 -7900388 + MIR SINE MIR 20 171 -91 2364 76 0 32 chr1 274293276 274293592 -7900072 + AluY SINE Alu 1 306 -5 247 337 90 34 chr1 274293592 274293632 -7900032 + MIR SINE MIR 171 207 -55 226 338 178 19 chr1 274293787 274293944 -7899720 - MER5A DNA MER1_type -1 188 7 35 0 0 0 chr1 274294141 274294176 -7899488 + AT_rich Low_complexity Low_complexity 1 35 0 340 160 120 0 chr1 274295200 274295300 -7898364 - L1MCa LINE L1 -4431 1995 1884 1478 18 0 0 chr1 274295326 274295496 -7898168 - L1PA3 LINE L1 0 6155 5986 2961 242 43 78 chr1 274296107 274297313 -7896351 + L1MC2 LINE L1 1 836 -5209 1802 120 23 62 chr1 274297313 274297621 -7896043 + AluSx SINE Alu 2 297 -15 2961 242 43 78 chr1 274297621 274297788 -7895876 + L1MC2 LINE L1 836 1007 -5038 1753 177 10 82 chr1 274297789 274298201 -7895463 + MLT1B LTR MaLR 1 382 -8 5813 234 67 18 chr1 274298207 274300950 -7892714 + L1MC2 LINE L1 1486 4454 -2110 339 363 0 0 chr1 274301582 274301750 -7891914 + (TGG)n Simple_repeat Simple_repeat 1 168 0 5048 206 62 11 chr1 274302664 274304841 -7888823 + L1MC2 LINE L1 4464 6760 -2 262 336 184 32 chr1 274305700 274306075 -7887589 - L3 LINE CR1 -77 1500 1069 700 151 16 0 chr1 274306087 274306213 -7887451 - MER96B DNA MER1_type? -10 407 280 228 158 73 12 chr1 274306188 274306270 -7887394 - MER96B DNA MER1_type? -64 353 267 * 5852 130 14 33 chr1 274306452 274307838 -7885826 - L1PA16 LINE L1 -9 6157 4783 2181 90 14 0 chr1 274308378 274308692 -7884972 - AluSc SINE Alu 0 318 1 1733 225 13 44 chr1 274309243 274309700 -7883964 + LTR47B LTR ERVL 1 443 0 2302 105 0 7 chr1 274309932 274310238 -7883426 - AluSx SINE Alu -8 304 1 400 332 111 5 chr1 274310318 274310535 -7883129 - MIR SINE MIR -13 249 10 180 125 0 0 chr1 274311536 274311568 -7882096 + (T)n Simple_repeat Simple_repeat 1 32 0 316 343 36 29 chr1 274311626 274311766 -7881898 - MIR3 SINE MIR -66 142 2 1400 136 9 0 chr1 274312683 274312911 -7880753 + L1MA1 LINE L1 6073 6302 0 25 65 0 0 chr1 274312911 274312957 -7880707 + AT_rich Low_complexity Low_complexity 1 46 0 2535 57 0 0 chr1 274313841 274314142 -7879522 - AluY SINE Alu -10 301 1 2626 32 3 0 chr1 274314207 274314515 -7879149 - AluY SINE Alu -2 309 1 2220 104 7 3 chr1 274315294 274315593 -7878071 - AluSc SINE Alu -9 300 1 319 411 18 6 chr1 274315692 274315855 -7877809 + L3 LINE CR1 1341 1505 -72 2292 93 3 34 chr1 274316211 274316532 -7877132 - AluSx SINE Alu -1 311 1 3688 83 10 59 chr1 274318128 274318703 -7874961 + LTR10B LTR ERV1 1 547 0 410 216 11 0 chr1 274319436 274319525 -7874139 + MER2 DNA MER2_type 1 89 -150 308 226 16 0 chr1 274319538 274319600 -7874064 + MER2 DNA MER2_type 283 345 0 208 170 57 0 chr1 274319626 274319679 -7873985 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 258 32 0 0 chr1 274320150 274320181 -7873483 + (TG)n Simple_repeat Simple_repeat 2 32 0 316 338 80 0 chr1 274320336 274320487 -7873177 + MIR SINE MIR 99 261 -1 639 158 33 0 chr1 274320579 274320699 -7872965 + L1MA5 LINE L1 6148 6271 -29 714 302 58 84 chr1 274320900 274321123 -7872541 + MER34 LTR ERV1 1 228 -314 1835 139 3 34 chr1 274321123 274321417 -7872247 + AluSx SINE Alu 1 285 -27 198 0 0 0 chr1 274321417 274321439 -7872225 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 714 302 58 84 chr1 274321439 274321771 -7871893 + MER34 LTR ERV1 226 542 0 569 291 36 61 chr1 274324553 274324800 -7868864 + MIR SINE MIR 21 261 -1 261 0 0 0 chr1 274325592 274325621 -7868043 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 297 0 0 0 chr1 274325620 274325653 -7868011 + (TA)n Simple_repeat Simple_repeat 1 33 0 236 285 164 48 chr1 274325953 274326039 -7867625 + MIR3 SINE MIR 14 89 -119 2134 103 7 0 chr1 274326039 274326329 -7867335 - AluSc SINE Alu -17 292 1 236 285 164 48 chr1 274326329 274326407 -7867257 + MIR3 SINE MIR 89 197 -11 1800 165 23 20 chr1 274327640 274327943 -7865721 + AluJo SINE Alu 1 304 -8 1709 163 0 3 chr1 274328042 274328342 -7865322 + L1MA6 LINE L1 5999 6297 -3 1679 292 75 43 chr1 274328615 274329571 -7864093 + L2 LINE L2 2243 3231 -82 2137 110 17 0 chr1 274329761 274330060 -7863604 - AluSx SINE Alu -6 306 3 186 71 48 24 chr1 274330138 274330180 -7863484 + (TA)n Simple_repeat Simple_repeat 1 43 0 202 160 40 0 chr1 274330677 274330727 -7862937 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 209 405 0 17 chr1 274330732 274330848 -7862816 - L2 LINE L2 -5 3267 3154 2247 109 0 0 chr1 274330885 274331188 -7862476 + AluSx SINE Alu 1 303 -9 1589 259 33 31 chr1 274331216 274331792 -7861872 + L1MC3 LINE L1 2 578 -5467 6795 228 48 48 chr1 274331884 274332231 -7861433 + L1MC3 LINE L1 573 918 -5646 1782 181 13 7 chr1 274332231 274332540 -7861124 - AluJb SINE Alu -1 311 1 6795 228 48 48 chr1 274332540 274336629 -7857035 + L1MC3 LINE L1 918 5117 -1447 2162 77 0 0 chr1 274336629 274336888 -7856776 + AluY SINE Alu 37 295 -16 6795 228 48 48 chr1 274336888 274337312 -7856352 + L1MC3 LINE L1 5117 5539 -1025 836 127 109 6 chr1 274337388 274337553 -7856111 - MER45B DNA AcHobo -330 710 529 651 211 67 91 chr1 274337557 274337726 -7855938 + L1MC3 LINE L1 6886 7045 -740 180 77 0 0 chr1 274337726 274337752 -7855912 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 651 211 67 91 chr1 274337752 274337923 -7855741 + L1MC3 LINE L1 7045 7218 -567 568 185 34 0 chr1 274337965 274338084 -7855580 + L1MC3 LINE L1 6275 6397 -1806 1032 171 0 30 chr1 274338084 274338283 -7855381 + L1MC3 LINE L1 7725 7917 -286 1857 162 32 29 chr1 274338293 274338849 -7854815 + MLT2A2 LTR ERVL 1 554 0 953 162 3 103 chr1 274338850 274339140 -7854524 + L1MC3 LINE L1 7925 8185 -18 1554 112 14 137 chr1 274340583 274340940 -7852724 - MER7A DNA MER2_type -34 312 2 28 61 0 0 chr1 274340940 274340989 -7852675 + AT_rich Low_complexity Low_complexity 1 49 0 1796 141 38 14 chr1 274341187 274341477 -7852187 + AluSx SINE Alu 6 302 -10 2075 123 6 49 chr1 274341496 274341859 -7851805 - AluJb SINE Alu 0 351 3 2075 125 6 40 chr1 274342285 274342631 -7851033 - AluJb SINE Alu 0 337 3 195 42 0 0 chr1 274342635 274342659 -7851005 + (T)n Simple_repeat Simple_repeat 1 24 0 232 262 19 0 chr1 274343961 274344064 -7849600 + GA-rich Low_complexity Low_complexity 2 106 0 382 304 249 33 chr1 274344747 274345893 -7847771 - L2 LINE L2 -189 3083 1684 1005 195 0 16 chr1 274345943 274346128 -7847536 + AluJo SINE Alu 123 304 -8 209 351 100 50 chr1 274346168 274346630 -7847034 - L2 LINE L2 -1783 1531 1047 189 214 71 0 chr1 274346689 274346731 -7846933 + L2 LINE L2 3170 3214 -58 369 272 97 9 chr1 274349009 274349123 -7844541 - L2 LINE L2 -3 3310 3187 243 277 36 18 chr1 274349838 274349950 -7843714 + L1ME4a LINE L1 5966 6079 -42 192 40 0 0 chr1 274351247 274351272 -7842392 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 215 345 0 0 chr1 274352096 274352154 -7841510 + MIR SINE MIR 194 251 -11 1820 149 22 0 chr1 274352798 274353105 -7840559 + AluSx SINE Alu 2 314 0 1432 182 6 11 chr1 274353139 274353451 -7840213 + MLT1A1 LTR MaLR 1 358 -7 4163 6 0 0 chr1 274354337 274354804 -7838860 + L1PA2 LINE L1 5689 6155 0 1300 173 25 115 chr1 274354833 274355156 -7838508 + AluJb SINE Alu 1 294 -18 2145 91 35 0 chr1 274355332 274355619 -7838045 + AluSx SINE Alu 1 297 -15 2141 67 42 11 chr1 274355690 274355974 -7837690 - AluY SINE Alu -18 293 1 21 36 0 0 chr1 274356679 274356707 -7836957 + AT_rich Low_complexity Low_complexity 1 28 0 250 271 74 66 chr1 274356984 274357106 -7836558 - MIR SINE MIR -120 142 20 2218 94 0 7 chr1 274357216 274357534 -7836130 + AluSc SINE Alu 1 309 0 1854 172 52 6 chr1 274358478 274358841 -7834823 + MLT2D LTR ERVL 1 478 -42 686 72 72 6 chr1 274358841 274359008 -7834656 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 576 57 114 0 chr1 274359026 274359184 -7834480 + (TCTA)n Simple_repeat Simple_repeat 2 177 0 441 0 0 0 chr1 274359186 274359235 -7834429 + (CA)n Simple_repeat Simple_repeat 2 50 0 232 300 14 0 chr1 274359470 274359540 -7834124 + (TA)n Simple_repeat Simple_repeat 2 72 0 362 281 22 29 chr1 274360864 274361003 -7832661 - MIR SINE MIR -6 256 119 344 299 42 24 chr1 274361020 274361187 -7832477 + HAL1b LINE L1 217 386 -962 399 278 91 52 chr1 274361350 274361580 -7832084 + L1 LINE L1 4298 4536 -1610 514 284 173 37 chr1 274361588 274361940 -7831724 - L2 LINE L2 -902 2412 2013 346 147 191 0 chr1 274361966 274362034 -7831630 + L2 LINE L2 3232 3312 -1 2109 117 0 7 chr1 274363194 274363504 -7830160 - AluSg SINE Alu 0 308 1 2376 93 3 7 chr1 274364234 274364544 -7829120 + AluSq SINE Alu 1 309 -4 188 320 0 0 chr1 274365493 274365543 -7828121 - L2 LINE L2 0 3313 3264 183 80 0 0 chr1 274367523 274367548 -7826116 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 405 0 0 0 chr1 274368045 274368090 -7825574 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 185 371 145 0 chr1 274368365 274368524 -7825140 + L2 LINE L2 2865 3046 -226 2668 23 7 3 chr1 274368669 274368979 -7824685 - AluY SINE Alu 0 311 1 1547 163 39 36 chr1 274369315 274369622 -7824042 - AluJo SINE Alu -4 308 1 196 313 96 17 chr1 274369835 274369950 -7823714 + L2 LINE L2 3149 3272 0 2372 195 26 28 chr1 274370624 274370949 -7822715 + MER90 LTR ERV1 3 369 -245 1982 118 14 7 chr1 274370949 274371238 -7822426 + AluSc SINE Alu 1 291 -18 2372 195 26 28 chr1 274371238 274371484 -7822180 + MER90 LTR ERV1 369 614 0 21 0 0 0 chr1 274371484 274371505 -7822159 + AT_rich Low_complexity Low_complexity 1 21 0 2204 110 3 10 chr1 274374013 274374323 -7819341 + AluSg SINE Alu 1 308 -2 1532 132 0 64 chr1 274374572 274374838 -7818826 + AluSg SINE Alu 59 307 -3 871 128 17 22 chr1 274374855 274375035 -7818629 + GA-rich Low_complexity Low_complexity 1 179 0 360 70 35 18 chr1 274375035 274375092 -7818572 + (GAAA)n Simple_repeat Simple_repeat 1 58 0 4417 256 60 49 chr1 274375092 274376578 -7817086 - L1MDa LINE L1 -650 5986 4517 186 43 0 0 chr1 274376578 274376601 -7817063 + (TTA)n Simple_repeat Simple_repeat 2 24 0 4417 256 60 49 chr1 274376601 274376625 -7817039 - L1MDa LINE L1 -2119 4517 4495 829 187 0 20 chr1 274376625 274376775 -7816889 - AluJo SINE Alu -165 147 1 4417 256 60 49 chr1 274376775 274378745 -7814919 - L1MDa LINE L1 -2141 4495 2394 195 42 0 0 chr1 274378746 274378770 -7814894 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1346 208 49 15 chr1 274378775 274378917 -7814747 - AluJo SINE Alu -38 274 138 285 98 0 0 chr1 274378917 274378958 -7814706 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1346 208 49 15 chr1 274378958 274379080 -7814584 - AluJo SINE Alu -174 138 1 2620 206 45 38 chr1 274379083 274379346 -7814318 - L1MDa LINE L1 -4148 2392 2132 2103 127 3 0 chr1 274379346 274379637 -7814027 + AluSx SINE Alu 5 296 -16 2620 206 45 38 chr1 274379637 274380208 -7813456 - L1MDa LINE L1 -4408 2132 1552 1072 196 34 47 chr1 274380695 274381017 -7812647 - L1MDa LINE L1 -4983 1557 1240 180 0 0 0 chr1 274381034 274381054 -7812610 + (TTA)n Simple_repeat Simple_repeat 1 20 0 910 113 97 38 chr1 274381073 274381259 -7812405 + MER30 DNA MER1_type 1 197 -33 759 258 130 39 chr1 274381270 274381399 -7812265 - L1MDa LINE L1 -5344 1196 1080 1754 185 0 7 chr1 274381399 274381702 -7811962 - AluSx SINE Alu -11 301 1 759 258 130 39 chr1 274381702 274382041 -7811623 - L1MDa LINE L1 -5460 1080 538 425 261 6 67 chr1 274382033 274382213 -7811451 + L1ME1 LINE L1 5952 6120 -46 * 519 243 20 7 chr1 274382101 274382249 -7811415 + L1MA10 LINE L1 6169 6318 -16 648 186 175 33 chr1 274382376 274382433 -7811231 - MER3 DNA MER1_type 0 209 161 222 37 0 0 chr1 274382433 274382460 -7811204 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2013 116 0 21 chr1 274382462 274382747 -7810917 - AluSx SINE Alu -33 279 1 648 186 175 33 chr1 274382747 274382869 -7810795 - MER3 DNA MER1_type -48 161 1 2285 156 43 103 chr1 274383342 274383951 -7809713 + L1MC1 LINE L1 5762 6333 0 2102 109 0 20 chr1 274383955 274384257 -7809407 + AluSq SINE Alu 1 296 -17 366 293 73 63 chr1 274384319 274384510 -7809154 + L2 LINE L2 3118 3310 -3 243 287 61 38 chr1 274384511 274384772 -7808892 + L1MC/D LINE L1 5273 5539 -2269 2548 57 0 0 chr1 274384967 274385267 -7808397 + AluY SINE Alu 1 300 -11 296 167 33 0 chr1 274385516 274385534 -7808130 - AluS SINE Alu -246 62 46 1684 102 9 0 chr1 274385534 274385759 -7807905 - AluSg/x SINE Alu -12 298 72 296 167 33 0 chr1 274385759 274385800 -7807864 - AluS SINE Alu -262 46 1 2203 135 125 2 chr1 274386237 274386779 -7806885 - MER39B LTR ERV1 0 653 1 921 218 113 79 chr1 274387042 274387312 -7806352 - L1ME2 LINE L1 -12 6152 5856 2266 98 3 7 chr1 274387312 274387619 -7806045 - AluSg SINE Alu -4 306 1 921 218 113 79 chr1 274387619 274387844 -7805820 - L1ME2 LINE L1 -308 5856 5640 195 305 86 59 chr1 274387983 274388170 -7805494 + L2 LINE L2 1385 1576 -1738 1538 133 16 170 chr1 274388496 274388693 -7804971 + Tigger2 DNA MER2_type 1 227 -2491 2190 146 0 0 chr1 274388693 274389002 -7804662 - AluSx SINE Alu -3 309 1 1538 133 16 170 chr1 274389002 274389323 -7804341 + Tigger2 DNA MER2_type 227 2716 -2 248 324 164 28 chr1 274389420 274389707 -7803957 - L2 LINE L2 -1864 1450 1125 226 49 24 24 chr1 274389897 274389938 -7803726 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 506 203 152 7 chr1 274390124 274390262 -7803402 - MER5A DNA MER1_type -6 183 26 3179 125 101 10 chr1 274390344 274390412 -7803252 + LTR24C LTR ERV1 1 61 -574 2132 140 3 0 chr1 274390412 274390720 -7802944 + AluSx SINE Alu 1 309 -3 3179 125 101 10 chr1 274390720 274391233 -7802431 + LTR24C LTR ERV1 61 635 0 2456 64 0 0 chr1 274391648 274391962 -7801702 + L1PA6 LINE L1 5841 6154 0 3007 155 33 24 chr1 274393300 274393849 -7799815 + MER41C LTR ERV1 1 554 0 1490 153 73 98 chr1 274394356 274394794 -7798870 + LTR49 LTR ERV1 1 427 -168 2316 117 0 0 chr1 274394819 274395128 -7798536 - AluSx SINE Alu -3 309 1 273 228 22 22 chr1 274395133 274395225 -7798439 + LTR48 LTR ERV1 631 722 -65 * 324 175 21 62 chr1 274395202 274395299 -7798365 + MER34B LTR ERV1 473 565 0 2219 127 0 0 chr1 274398005 274398304 -7795360 + AluSc SINE Alu 3 301 -8 1000 239 67 13 chr1 274398487 274398980 -7794684 - L1MCa LINE L1 -3948 2616 2079 1850 109 8 0 chr1 274398980 274399227 -7794437 + AluSx SINE Alu 56 304 -8 1000 239 67 13 chr1 274399227 274399298 -7794366 - L1MCa LINE L1 -4485 2079 2013 814 207 40 46 chr1 274399305 274399609 -7794055 - L1MCa LINE L1 -4752 1812 1511 * 1662 221 25 73 chr1 274399588 274399728 -7793936 - L1MCa LINE L1 -4911 1134 989 1933 132 6 60 chr1 274399728 274400046 -7793618 - AluSx SINE Alu -11 301 1 1662 221 25 73 chr1 274400046 274400515 -7793149 - L1MCa LINE L1 -5056 989 570 480 346 5 5 chr1 274400755 274400960 -7792704 - L1MCa LINE L1 -5637 408 204 302 289 0 48 chr1 274400977 274401081 -7792583 - L1MCa LINE L1 -5819 226 128 3755 59 0 6 chr1 274401120 274401597 -7792067 - L1PA6 LINE L1 -2 6152 5679 369 240 10 0 chr1 274401601 274401705 -7791959 - L1MCa LINE L1 -5903 142 38 368 323 102 16 chr1 274401797 274401983 -7791681 + MIR SINE MIR 57 258 -4 873 208 174 47 chr1 274401998 274402383 -7791281 - MLT1C LTR MaLR 0 467 34 306 274 119 48 chr1 274403821 274403937 -7789727 - MIR SINE MIR 0 262 129 2809 191 67 39 chr1 274403937 274404609 -7789055 + LTR8 LTR ERV1 1 691 0 306 274 119 48 chr1 274404609 274404660 -7789004 - MIR SINE MIR -133 129 83 1173 205 49 57 chr1 274404829 274405202 -7788462 + MER67C LTR ERV1 1 403 -243 264 167 30 15 chr1 274405295 274405361 -7788303 + MER67D LTR ERV1 448 514 0 234 0 0 0 chr1 274405372 274405398 -7788266 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1956 90 10 35 chr1 274405400 274405689 -7787975 - AluSp SINE Alu -31 282 1 594 299 62 37 chr1 274406945 274407186 -7786478 - MIR SINE MIR -14 248 2 389 304 52 52 chr1 274407691 274407885 -7785779 + L2 LINE L2 3120 3313 0 2260 98 0 3 chr1 274407944 274408239 -7785425 + AluSx SINE Alu 2 295 -17 551 324 80 44 chr1 274408239 274408628 -7785036 - L2 LINE L2 -21 3292 2890 1326 152 0 62 chr1 274408630 274408873 -7784791 + AluJo SINE Alu 85 312 0 1024 312 42 51 chr1 274408888 274409510 -7784154 - L2 LINE L2 -429 2885 2270 324 0 0 0 chr1 274412004 274412040 -7781624 + (TA)n Simple_repeat Simple_repeat 2 37 0 309 228 11 43 chr1 274412040 274412132 -7781532 - L1MC4 LINE L1 -1339 6703 6615 405 0 0 0 chr1 274412164 274412209 -7781455 + (CA)n Simple_repeat Simple_repeat 2 46 0 423 243 193 58 chr1 274412217 274412476 -7781188 + L2 LINE L2 2414 2707 -607 5569 164 12 17 chr1 274412659 274414707 -7778957 - L1PB4 LINE L1 -5 6151 4112 2092 116 18 0 chr1 274414759 274415043 -7778621 + AluSx SINE Alu 1 289 -23 41 78 0 0 chr1 274415141 274415231 -7778433 + AT_rich Low_complexity Low_complexity 1 90 0 25 0 0 0 chr1 274415245 274415270 -7778394 + AT_rich Low_complexity Low_complexity 1 25 0 434 222 9 0 chr1 274415591 274415699 -7777965 + MER103 DNA DNA 58 166 0 332 268 7 0 chr1 274417297 274417439 -7776225 + (CACCAT)n Simple_repeat Simple_repeat 3 145 0 262 288 0 0 chr1 274417439 274417505 -7776159 - MIR SINE MIR -1 261 196 595 299 106 31 chr1 274418423 274418781 -7774883 + MLT1J2 LTR MaLR 45 429 -21 2639 128 17 32 chr1 274419047 274419125 -7774539 + L1PB2 LINE L1 5691 5769 -382 2186 108 0 7 chr1 274419125 274419422 -7774242 + AluSg SINE Alu 1 295 -15 2639 128 17 32 chr1 274419422 274419804 -7773860 + L1PB2 LINE L1 5769 6144 -7 1559 159 93 0 chr1 274420409 274420679 -7772985 + AluJo SINE Alu 16 310 -2 757 275 80 54 chr1 274421218 274421644 -7772020 + MLT1J2 LTR MaLR 7 443 -7 2060 95 42 0 chr1 274422151 274422165 -7771499 - AluSq SINE Alu -16 297 285 304 28 0 0 chr1 274422165 274422201 -7771463 + (TTTA)n Simple_repeat Simple_repeat 1 104 0 2060 95 42 0 chr1 274422201 274422469 -7771195 - AluSq SINE Alu -28 285 3 186 43 0 0 chr1 274422483 274422506 -7771158 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 257 348 68 17 chr1 274423537 274423655 -7770009 + L2 LINE L2 3143 3266 -6 2239 92 0 51 chr1 274424339 274424653 -7769011 + AluSx SINE Alu 1 298 -14 367 265 33 20 chr1 274424910 274425061 -7768603 - HAL1b LINE L1 -803 545 393 253 177 258 0 chr1 274425129 274425191 -7768473 + MER2 DNA MER2_type 267 344 -1 291 109 44 58 chr1 274425225 274425362 -7768302 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 1123 172 5 0 chr1 274425419 274425622 -7768042 - MER2 DNA MER2_type -138 207 4 435 286 104 34 chr1 274425626 274425781 -7767883 - HAL1b LINE L1 -967 381 238 2179 116 13 7 chr1 274425781 274426091 -7767573 - AluSx SINE Alu 0 312 1 435 286 104 34 chr1 274426091 274426104 -7767560 - HAL1b LINE L1 -1110 238 227 1528 216 3 35 chr1 274426104 274426414 -7767250 - AluJo SINE Alu -12 300 1 435 286 104 34 chr1 274426414 274426513 -7767151 - HAL1b LINE L1 -1121 227 94 2178 109 0 0 chr1 274427032 274427345 -7766319 - AluSx SINE Alu 0 313 1 1402 142 31 0 chr1 274427843 274428069 -7765595 - L1PA16 LINE L1 -9 6157 5925 264 116 2 11 chr1 274428069 274428130 -7765534 + L1PA16 LINE L1 5893 5954 -200 322 390 29 5 chr1 274428845 274429055 -7764609 + LTR16B LTR ERVL 97 311 -153 2371 114 0 0 chr1 274429417 274429723 -7763941 - AluSx SINE Alu -6 306 1 642 290 45 45 chr1 274430612 274430857 -7762807 - MIR SINE MIR -17 245 1 360 330 54 86 chr1 274430954 274431305 -7762359 - L2 LINE L2 -16 3256 2917 2115 144 33 25 chr1 274432508 274432869 -7760795 + THE1B LTR MaLR 1 364 0 949 313 99 30 chr1 274433232 274433821 -7759843 + L2 LINE L2 2110 2807 -507 255 192 82 0 chr1 274433874 274433947 -7759717 - MER112 DNA MER1_type -88 172 94 1853 157 34 6 chr1 274434017 274434341 -7759323 - MER21B LTR ERV1 -113 750 418 2119 193 122 7 chr1 274434341 274434792 -7758872 - MER21B LTR ERV1 -344 519 17 253 276 0 13 chr1 274434826 274434902 -7758762 - MER112 DNA MER1_type -185 75 1 1187 306 43 43 chr1 274434904 274435413 -7758251 + L2 LINE L2 2804 3312 -1 423 326 15 15 chr1 274436078 274436213 -7757451 + MIR3 SINE MIR 24 158 -50 564 280 164 0 chr1 274436231 274436445 -7757219 - MIR SINE MIR -13 249 1 470 106 17 11 chr1 274436485 274436720 -7756944 + AluSx SINE Alu 1 285 -25 2788 189 116 8 chr1 274436780 274437442 -7756222 + MER50 LTR ERV1 1 734 0 201 379 57 7 chr1 274437485 274437625 -7756039 + L2 LINE L2 3161 3307 -6 189 256 128 0 chr1 274437628 274437706 -7755958 + L3 LINE CR1 1486 1573 -4 726 333 114 17 chr1 274437724 274438189 -7755475 + L2 LINE L2 1776 2285 -1029 501 341 125 9 chr1 274438656 274438984 -7754680 + L2 LINE L2 2332 2697 -617 198 333 27 13 chr1 274439195 274439270 -7754394 + L2 LINE L2 3177 3252 -20 2312 150 4 5 chr1 274439476 274440014 -7753650 + LTR69 LTR ERVL 3 580 -8 199 275 58 14 chr1 274440400 274440469 -7753195 + L3 LINE CR1 230 301 -1276 219 273 18 0 chr1 274442545 274442600 -7751064 - L2 LINE L2 0 3313 3258 2499 69 3 0 chr1 274442755 274443059 -7750605 + AluSp SINE Alu 1 305 -8 1440 175 40 24 chr1 274443158 274443455 -7750209 + AluJo SINE Alu 2 303 -9 773 116 50 0 chr1 274443467 274443588 -7750076 + AluJo SINE Alu 1 127 -175 336 302 12 0 chr1 274443929 274444015 -7749649 + MIR SINE MIR 65 151 -111 283 191 46 15 chr1 274444049 274444180 -7749484 + (TA)n Simple_repeat Simple_repeat 1 135 0 533 241 135 12 chr1 274444646 274444816 -7748848 + MIR SINE MIR 72 262 0 285 284 118 10 chr1 274446062 274446164 -7747500 + L2 LINE L2 3133 3245 -27 180 250 146 0 chr1 274446199 274446247 -7747417 + L2 LINE L2 3241 3295 -18 2261 86 17 0 chr1 274446376 274446667 -7746997 - AluSx SINE Alu -16 296 1 272 221 265 44 chr1 274446830 274447011 -7746653 + L3 LINE CR1 778 998 -579 279 0 0 0 chr1 274447077 274447108 -7746556 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 450 0 0 0 chr1 274447107 274447157 -7746507 + (TA)n Simple_repeat Simple_repeat 1 50 0 506 318 88 18 chr1 274447308 274447525 -7746139 - MIR SINE MIR -4 258 27 2215 136 40 10 chr1 274447659 274448055 -7745609 + MSTA LTR MaLR 1 408 -20 371 246 97 0 chr1 274448805 274448919 -7744745 - MIR SINE MIR -71 191 67 182 385 8 25 chr1 274450411 274450533 -7743131 + MIR SINE MIR 72 191 -71 1326 121 0 34 chr1 274450597 274450804 -7742860 + AluJo SINE Alu 113 312 0 707 296 39 50 chr1 274451139 274451555 -7742109 + REP3 LTR ERV 1 411 -151 233 247 47 24 chr1 274452090 274452175 -7741489 - HAL1 LINE L1 -2373 134 48 2067 125 17 0 chr1 274452792 274453080 -7740584 - AluSx SINE Alu -15 297 5 311 264 192 17 chr1 274453309 274453615 -7740049 - MLT1K LTR MaLR -26 562 174 1532 104 45 0 chr1 274454384 274454604 -7739060 + MER30 DNA MER1_type 1 230 0 225 266 35 29 chr1 274456907 274457080 -7736584 + (TA)n Simple_repeat Simple_repeat 2 175 0 396 0 0 0 chr1 274457190 274457234 -7736430 + (TG)n Simple_repeat Simple_repeat 1 44 0 333 0 0 0 chr1 274457376 274457413 -7736251 + (TG)n Simple_repeat Simple_repeat 2 38 0 183 74 0 0 chr1 274457413 274457435 -7736229 + (CATATA)n Simple_repeat Simple_repeat 2 23 0 231 0 0 0 chr1 274457465 274457493 -7736171 - L1PA16 LINE L1 -22 6144 6117 208 325 52 13 chr1 274457531 274457608 -7736056 + MIR SINE MIR 41 120 -142 222 316 82 20 chr1 274458203 274458301 -7735363 - L2 LINE L2 -16 3256 3153 279 0 0 0 chr1 274458742 274458773 -7734891 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1787 137 26 0 chr1 274461371 274461678 -7731986 + L1MA4 LINE L1 5970 6284 -16 2333 121 0 3 chr1 274461765 274462138 -7731526 + AluSx SINE Alu 1 372 0 2114 98 7 29 chr1 274464254 274464560 -7729104 - AluSx SINE Alu -13 299 1 264 280 11 32 chr1 274464978 274465071 -7728593 + L2 LINE L2 2263 2353 -961 450 335 96 42 chr1 274465311 274465968 -7727696 + L2 LINE L2 2544 3242 -30 2022 123 0 0 chr1 274466493 274466770 -7726894 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr1 274466771 274466796 -7726868 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 501 17 0 0 chr1 274466795 274466853 -7726811 + (TA)n Simple_repeat Simple_repeat 1 58 0 246 338 117 32 chr1 274466901 274467055 -7726609 - L2 LINE L2 -337 2976 2810 571 211 23 0 chr1 274467073 274467206 -7726458 + MER34 LTR ERV1 1 136 -406 227 207 61 37 chr1 274467429 274467511 -7726153 + MER34 LTR ERV1 438 521 -21 2116 39 46 4 chr1 274467511 274467771 -7725893 + AluY SINE Alu 33 303 -8 641 300 193 13 chr1 274467891 274468341 -7725323 - L2 LINE L2 -626 2688 2158 327 315 116 14 chr1 274468447 274468593 -7725071 - MIR3 SINE MIR -8 200 40 224 286 92 10 chr1 274468837 274468935 -7724729 + MIR SINE MIR 103 208 -54 2329 78 0 0 chr1 274469025 274469352 -7724312 + AluY SINE Alu 1 327 0 1786 202 0 3 chr1 274469358 274469660 -7724004 + AluJo SINE Alu 1 301 -11 29 0 0 0 chr1 274469713 274469742 -7723922 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr1 274470818 274470853 -7722811 + AT_rich Low_complexity Low_complexity 1 35 0 190 358 0 15 chr1 274471193 274471260 -7722404 + L2 LINE L2 3206 3271 -1 191 36 36 0 chr1 274471382 274471410 -7722254 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 233 315 45 27 chr1 274471412 274471523 -7722141 + MER5A DNA MER1_type 50 162 -16 420 91 0 0 chr1 274471983 274472049 -7721615 + (CA)n Simple_repeat Simple_repeat 2 67 0 309 26 0 0 chr1 274472360 274472398 -7721266 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 1085 112 40 165 chr1 274473050 274473135 -7720529 - L1MA5A LINE L1 -1 6296 6202 1703 143 33 47 chr1 274473135 274473435 -7720229 + AluJb SINE Alu 14 309 -3 1085 112 40 165 chr1 274473435 274473671 -7719993 - L1MA5A LINE L1 -95 6202 6015 368 265 7 0 chr1 274477073 274477209 -7716455 + (CA)n Simple_repeat Simple_repeat 2 138 0 221 346 84 9 chr1 274477494 274477601 -7716063 - L2 LINE L2 0 3272 3158 969 150 27 0 chr1 274477619 274477806 -7715858 + L1MD3 LINE L1 7794 7985 -10 2578 49 0 0 chr1 274477856 274478160 -7715504 + AluY SINE Alu 1 304 -7 421 262 14 48 chr1 274478317 274478462 -7715202 + MIR SINE MIR 46 185 -77 2250 116 0 0 chr1 274478977 274479288 -7714376 + AluSx SINE Alu 2 312 0 234 210 16 0 chr1 274479947 274480009 -7713655 + A-rich Low_complexity Low_complexity 4 66 0 2969 166 55 4 chr1 274480039 274480599 -7713065 + LTR59 LTR ERV1 3 591 -6 233 217 0 17 chr1 274480914 274480974 -7712690 + L1MCa LINE L1 2006 2064 -4362 226 158 0 105 chr1 274480953 274481029 -7712635 - L1MCa LINE L1 -4359 2067 2000 * 1886 172 0 7 chr1 274481352 274481655 -7712009 + AluJb SINE Alu 1 301 -11 528 305 52 33 chr1 274481724 274481934 -7711730 + MIR SINE MIR 10 223 -39 189 74 0 0 chr1 274481942 274481969 -7711695 + (CAT)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr1 274482340 274482368 -7711296 + AT_rich Low_complexity Low_complexity 1 28 0 265 308 25 17 chr1 274533358 274533478 -7660186 + L1ME LINE L1 464 584 -5946 2202 96 0 0 chr1 274533930 274534240 -7659424 + AluSq SINE Alu 1 310 0 686 260 78 57 chr1 274534355 274535101 -7658563 + L1ME LINE L1 1247 2064 -4657 2294 270 83 34 chr1 274535623 274537585 -7656079 + L1ME LINE L1 2384 4377 -2163 528 86 16 14 chr1 274537600 274537843 -7655821 + AluSc SINE Alu 14 289 -20 451 279 31 6 chr1 274537857 274538018 -7655646 + L1ME LINE L1 4389 4553 -1987 476 322 40 20 chr1 274538278 274538477 -7655187 + MIR SINE MIR 50 252 -10 381 172 0 46 chr1 274538744 274538831 -7654833 - L1ME3A LINE L1 -33 6137 6055 205 364 63 42 chr1 274538865 274539008 -7654656 + MIR3 SINE MIR 2 147 -61 266 355 150 29 chr1 274539082 274539663 -7654001 + L2 LINE L2 1988 2638 -676 388 327 61 37 chr1 274540077 274540291 -7653373 - MIR SINE MIR -24 238 20 504 68 0 0 chr1 274540408 274540481 -7653183 + (CA)n Simple_repeat Simple_repeat 2 74 0 3569 122 50 28 chr1 274540771 274541410 -7652254 - MER39B LTR ERV1 0 653 1 2326 93 3 0 chr1 274541662 274541962 -7651702 - AluSc SINE Alu -8 301 1 267 188 27 125 chr1 274542005 274542117 -7651547 + LTR67 LTR ERVL 457 557 0 28 0 0 0 chr1 274542180 274542208 -7651456 + AT_rich Low_complexity Low_complexity 1 28 0 2161 96 3 20 chr1 274543509 274543810 -7649854 - AluSc SINE Alu -13 296 1 1848 139 30 30 chr1 274543896 274544191 -7649473 - AluSx SINE Alu -17 295 1 918 349 55 48 chr1 274544377 274544661 -7649003 + L2 LINE L2 2433 2713 -600 1905 108 16 0 chr1 274544661 274544919 -7648745 - AluSc SINE Alu -11 298 37 918 349 55 48 chr1 274544919 274545325 -7648339 + L2 LINE L2 2713 3144 -169 316 198 10 31 chr1 274545335 274545393 -7648271 + CT-rich Low_complexity Low_complexity 1 58 -36 2282 41 4 0 chr1 274545393 274545663 -7648001 - AluY SINE Alu -5 306 36 316 198 10 31 chr1 274545663 274545700 -7647964 + CT-rich Low_complexity Low_complexity 58 94 0 439 290 116 24 chr1 274545863 274546070 -7647594 - L2 LINE L2 -2 3311 3086 2050 115 3 3 chr1 274546345 274546633 -7647031 - AluSg SINE Alu -20 290 3 693 318 78 47 chr1 274547463 274547885 -7645779 + L3 LINE CR1 494 928 -649 297 185 107 174 chr1 274547911 274547985 -7645679 - MIR SINE MIR 0 262 185 1892 170 0 3 chr1 274547985 274548297 -7645367 + AluJb SINE Alu 1 311 -1 297 185 107 174 chr1 274548297 274548400 -7645264 - MIR SINE MIR -77 185 97 * 300 293 218 8 chr1 274548395 274548528 -7645136 + L3 LINE CR1 931 1091 -486 1047 148 0 0 chr1 274548587 274548742 -7644922 - AluSg/x SINE Alu -18 292 138 4233 57 2 0 chr1 274548850 274549414 -7644250 - L1PA8 LINE L1 -221 5951 5387 2681 116 101 20 chr1 274549438 274549974 -7643690 - Tigger3b DNA MER2_type -591 640 62 5627 98 17 10 chr1 274550144 274550492 -7643172 - L1PB1 LINE L1 -2 6149 5805 486 0 0 0 chr1 274550492 274550546 -7643118 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 5627 98 17 10 chr1 274550546 274551222 -7642442 - L1PB1 LINE L1 -346 5805 5105 902 284 128 38 chr1 274551475 274551944 -7641720 - L2 LINE L2 -501 2813 2303 4937 29 3 0 chr1 274552326 274553028 -7640636 + L1PA4 LINE L1 5167 5870 -285 1624 115 4 0 chr1 274554009 274554235 -7639429 + AluY SINE Alu 85 311 0 1421 171 158 16 chr1 274554354 274554676 -7638988 - MLT1A2 LTR MaLR -4 370 3 247 218 109 59 chr1 274554928 274555029 -7638635 - MIR3 SINE MIR -4 204 99 185 333 0 0 chr1 274555021 274555069 -7638595 + L3b LINE CR1 1536 1583 0 * 26 64 0 0 chr1 274556215 274556262 -7637402 + AT_rich Low_complexity Low_complexity 1 47 0 1496 206 42 28 chr1 274556509 274556869 -7636795 - MLT1A1 LTR MaLR 0 365 1 324 0 0 0 chr1 274556933 274556969 -7636695 + (CA)n Simple_repeat Simple_repeat 2 37 0 281 185 22 22 chr1 274556976 274557068 -7636596 + (TA)n Simple_repeat Simple_repeat 1 92 0 1628 219 58 0 chr1 274557096 274557439 -7636225 - MLT1A1 LTR MaLR 0 365 3 943 198 0 17 chr1 274557567 274557739 -7635925 - AluSg SINE Alu -141 169 1 181 323 94 10 chr1 274557996 274558092 -7635572 + L3 LINE CR1 1368 1471 -106 1914 100 4 8 chr1 274558293 274558552 -7635112 + AluSx SINE Alu 1 258 -54 200 218 50 20 chr1 274559321 274559422 -7634242 + (TTAA)n Simple_repeat Simple_repeat 2 105 0 700 233 92 0 chr1 274559618 274559781 -7633883 + MER45A DNA AcHobo 1 178 0 234 329 35 0 chr1 274559923 274560008 -7633656 - MIR3 SINE MIR -32 176 89 1240 275 62 65 chr1 274560804 274561081 -7632583 - L1ME LINE L1 -4305 1956 1680 1746 172 0 4 chr1 274561081 274561354 -7632310 - AluJb SINE Alu -39 273 2 1240 275 62 65 chr1 274561354 274562474 -7631190 - L1ME LINE L1 -4581 1680 526 469 344 37 30 chr1 274562761 274563165 -7630499 - L1ME LINE L1 -5644 426 20 2093 123 0 7 chr1 274563280 274563590 -7630074 + AluSg SINE Alu 1 308 -2 222 324 126 9 chr1 274564186 274564297 -7629367 - MIR3 SINE MIR -48 160 37 2352 84 17 0 chr1 274565815 274566111 -7627553 + AluSp SINE Alu 1 301 -12 27 0 0 0 chr1 274566111 274566138 -7627526 + AT_rich Low_complexity Low_complexity 1 27 0 304 375 68 26 chr1 274566302 274566494 -7627170 - MIR3 SINE MIR -6 202 3 238 273 55 82 chr1 274567028 274567138 -7626526 + MIR SINE MIR 82 188 -74 1728 25 10 0 chr1 274567322 274567526 -7626138 + L1PA3 LINE L1 5950 6155 0 220 27 54 0 chr1 274567530 274567567 -7626097 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 213 191 29 59 chr1 274567711 274567779 -7625885 + MIR3 SINE MIR 9 74 -134 1896 98 0 40 chr1 274567815 274568092 -7625572 + AluSc SINE Alu 35 300 -9 2240 113 0 0 chr1 274569261 274569570 -7624094 + AluSg SINE Alu 1 309 -1 1195 113 0 0 chr1 274569570 274569729 -7623935 + AluSg/x SINE Alu 132 290 -20 28 0 0 0 chr1 274569729 274569757 -7623907 + AT_rich Low_complexity Low_complexity 1 28 0 269 217 83 92 chr1 274569986 274570055 -7623609 - L2 LINE L2 0 3313 3244 666 125 15 29 chr1 274570055 274570191 -7623473 + L1MA6 LINE L1 6165 6298 -2 269 217 83 92 chr1 274570191 274570241 -7623423 - L2 LINE L2 -69 3244 3195 2156 125 3 0 chr1 274570657 274570952 -7622712 + AluSx SINE Alu 1 296 -16 254 279 125 19 chr1 274571011 274571115 -7622549 + MIR3 SINE MIR 67 181 -27 286 113 19 19 chr1 274571278 274571331 -7622333 + LTR53 LTR ERVL 1 53 -466 441 265 154 0 chr1 274571437 274571599 -7622065 + MLT1K LTR MaLR 325 511 -77 1425 196 15 74 chr1 274571644 274572037 -7621627 + MLT1A2 LTR MaLR 1 370 -4 198 191 0 0 chr1 274572672 274572719 -7620945 + (TG)n Simple_repeat Simple_repeat 2 48 0 720 170 14 127 chr1 274573147 274573281 -7620383 - MER5A DNA MER1_type -1 188 85 1655 115 0 21 chr1 274573281 274573515 -7620149 - AluSg/x SINE Alu -10 300 72 720 170 14 127 chr1 274573515 274573592 -7620072 - MER5A DNA MER1_type -104 85 1 2292 134 48 28 chr1 274573782 274574139 -7619525 + THE1B LTR MaLR 1 364 0 672 256 48 24 chr1 274574936 274575104 -7618560 + MER5B DNA MER1_type 2 173 -5 783 217 0 12 chr1 274575369 274575530 -7618134 + AluJo SINE Alu 115 273 -39 1042 122 6 11 chr1 274575539 274575564 -7618100 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 1042 122 6 11 chr1 274575564 274575745 -7617919 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 579 272 58 0 chr1 274575976 274576149 -7617515 + MLT1J2 LTR MaLR 1 183 -267 1609 213 53 112 chr1 274576157 274576650 -7617014 + MLT2D LTR ERVL 1 464 0 545 187 38 67 chr1 274576681 274576840 -7616824 + MLT1J2 LTR MaLR 335 450 0 572 266 34 28 chr1 274576894 274577071 -7616593 - MER5B DNA MER1_type 0 178 1 379 271 45 23 chr1 274577249 274577382 -7616282 - MIR SINE MIR -64 198 63 2254 81 0 0 chr1 274577428 274577724 -7615940 - L1PA7 LINE L1 -132 6022 5727 459 197 25 74 chr1 274577840 274577962 -7615702 - MLT1J2 LTR MaLR 0 450 335 758 287 50 73 chr1 274578001 274578440 -7615224 + L3 LINE CR1 1007 1435 -142 231 310 113 0 chr1 274578540 274578611 -7615053 + L3b LINE CR1 1496 1574 -9 191 35 0 35 chr1 274578694 274578723 -7614941 + (TA)n Simple_repeat Simple_repeat 2 29 0 3212 83 7 2 chr1 274578731 274579141 -7614523 - L1PA7 LINE L1 0 6154 5743 191 315 0 0 chr1 274579474 274579528 -7614136 + L2 LINE L2 3205 3258 -14 1311 183 5 5 chr1 274579639 274579858 -7613806 - L1PB4 LINE L1 -7 6149 5931 726 167 0 0 chr1 274579958 274580078 -7613586 - L1PB4 LINE L1 -132 6024 5905 232 342 40 26 chr1 274580298 274580374 -7613290 + L2 LINE L2 3169 3245 -27 195 100 0 0 chr1 274580377 274580407 -7613257 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 293 291 64 9 chr1 274581297 274581407 -7612257 - L2 LINE L2 -1 3271 3156 194 277 151 25 chr1 274582019 274582138 -7611526 - MIR SINE MIR -15 193 59 1209 180 29 113 chr1 274582289 274582600 -7611064 + AluJo SINE Alu 14 298 -14 1000 253 124 48 chr1 274582681 274583278 -7610386 + MLT1G LTR MaLR 1 555 0 277 276 61 29 chr1 274583426 274583545 -7610119 - MIR SINE MIR -70 138 20 809 251 28 0 chr1 274583677 274583892 -7609772 + L1MD3 LINE L1 7765 7985 -10 1949 149 0 0 chr1 274585038 274585343 -7608321 - AluSx SINE Alu 0 305 1 26 50 0 0 chr1 274586153 274586193 -7607471 + AT_rich Low_complexity Low_complexity 1 40 0 544 97 28 0 chr1 274586254 274586326 -7607338 - AluSg/x SINE Alu -164 146 73 1273 111 0 0 chr1 274586326 274586488 -7607176 - AluSx SINE Alu -150 162 1 2325 208 32 9 chr1 274586489 274587022 -7606642 - L1M4 LINE L1 -815 5331 4787 330 26 0 0 chr1 274587022 274587061 -7606603 + (TC)n Simple_repeat Simple_repeat 2 40 0 1335 178 0 73 chr1 274587069 274587344 -7606320 - AluJo SINE Alu -57 255 1 1460 214 87 28 chr1 274587344 274587802 -7605862 - L1M4 LINE L1 -1349 4797 4313 1790 196 41 22 chr1 274587957 274588370 -7605294 - L1MA4 LINE L1 -20 6280 5860 1512 121 38 53 chr1 274588471 274588736 -7604928 - L1MA4 LINE L1 -630 5670 5410 187 333 0 0 chr1 274588802 274588856 -7604808 + L2 LINE L2 3006 3059 -213 662 294 88 84 chr1 274588991 274589488 -7604176 + MLT1J LTR MaLR 1 499 -12 266 349 0 0 chr1 274589509 274589575 -7604089 + L2 LINE L2 3197 3262 -10 443 360 0 16 chr1 274589875 274590064 -7603600 - MIR3 SINE MIR -1 207 22 585 172 40 17 chr1 274590321 274590495 -7603169 + CT-rich Low_complexity Low_complexity 3 180 0 467 69 14 0 chr1 274590645 274590717 -7602947 + (GA)n Simple_repeat Simple_repeat 1 73 0 230 307 40 30 chr1 274590814 274590915 -7602749 + MLT1L LTR MaLR 378 479 -136 951 156 18 30 chr1 274593292 274593459 -7600205 - FRAM SINE Alu -13 163 1 2239 96 3 0 chr1 274593727 274594028 -7599636 - AluY SINE Alu -9 302 1 233 379 45 0 chr1 274594093 274594225 -7599439 + L2 LINE L2 2601 2738 -576 494 221 63 31 chr1 274594435 274594562 -7599102 + MER5A DNA MER1_type 3 133 -56 341 335 53 0 chr1 274594782 274594934 -7598730 - MIR3 SINE MIR -2 206 47 803 31 31 0 chr1 274596167 274596263 -7597401 + L1PA4 LINE L1 6057 6155 0 1901 136 104 12 chr1 274596297 274596642 -7597022 + MSTA LTR MaLR 1 377 -51 2183 119 0 0 chr1 274596673 274596967 -7596697 + AluSg SINE Alu 1 294 -16 2462 73 0 0 chr1 274596969 274597270 -7596394 + AluY SINE Alu 1 301 -10 317 133 33 17 chr1 274598553 274598613 -7595051 - LTR5 LTR ERVK 0 969 909 1525 262 79 28 chr1 274598966 274599490 -7594174 - L1MEc LINE L1 -3391 2755 2231 540 111 0 0 chr1 274599490 274599571 -7594093 + (TA)n Simple_repeat Simple_repeat 2 82 0 1525 262 79 28 chr1 274599571 274599700 -7593964 - L1MEc LINE L1 -3915 2231 2110 2414 236 100 11 chr1 274600029 274600741 -7592923 - L1M4 LINE L1 -854 5292 4518 325 315 70 50 chr1 274600733 274600974 -7592690 + L1ME3A LINE L1 5599 5844 -326 * 191 295 188 27 chr1 274601932 274602044 -7591620 + L2 LINE L2 3161 3290 -23 2176 132 0 0 chr1 274602544 274602855 -7590809 - AluSx SINE Alu -1 311 1 2366 105 0 3 chr1 274603077 274603390 -7590274 - AluSx SINE Alu 0 312 1 180 200 0 0 chr1 274604861 274604901 -7588763 + GA-rich Low_complexity Low_complexity 3 42 0 22 56 0 0 chr1 274605147 274605183 -7588481 + AT_rich Low_complexity Low_complexity 1 36 0 465 296 13 19 chr1 274605780 274605939 -7587725 + L2 LINE L2 3152 3309 -4 218 306 14 14 chr1 274607130 274607202 -7586462 + L2 LINE L2 2985 3056 -216 1366 188 58 55 chr1 274608536 274608828 -7584836 + AluJo SINE Alu 1 293 -19 5596 144 42 4 chr1 274608832 274609747 -7583917 - L1MC1 LINE L1 -16 6317 5369 641 263 54 11 chr1 274610747 274610933 -7582731 - L2 LINE L2 -267 3046 2853 2411 60 0 0 chr1 274610970 274611275 -7582389 + AluY SINE Alu 1 305 0 625 225 63 55 chr1 274611324 274611569 -7582095 - L1MC5 LINE L1 -20 7941 7692 213 39 0 0 chr1 274611569 274611595 -7582069 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 625 225 63 55 chr1 274611595 274611620 -7582044 - L1MC5 LINE L1 -269 7692 7669 455 246 45 60 chr1 274611635 274611819 -7581845 - MER63A DNA MER1_type -1492 196 14 2362 133 122 10 chr1 274611819 274612204 -7581460 + MSTA LTR MaLR 1 428 0 455 246 45 60 chr1 274612204 274612218 -7581446 - MER63A DNA MER1_type -1674 14 1 1292 215 88 55 chr1 274612220 274612788 -7580876 - L1MC5 LINE L1 -289 7672 7086 574 197 0 76 chr1 274612796 274612928 -7580736 - FLAM_A SINE Alu -8 134 13 464 307 18 48 chr1 274612928 274613156 -7580508 - L2 LINE L2 -600 2714 2494 1717 181 71 3 chr1 274614070 274614408 -7579256 + LTR53 LTR ERVL 159 519 0 2566 72 3 0 chr1 274614866 274615173 -7578491 - AluSp SINE Alu -5 308 1 213 271 12 71 chr1 274615785 274615870 -7577794 - L2 LINE L2 0 3272 3193 1383 272 132 63 chr1 274616197 274617363 -7576301 - HAL1 LINE L1 -732 1775 529 931 159 74 0 chr1 274617388 274617564 -7576100 - MER20 DNA MER1_type 0 219 31 253 321 117 48 chr1 274617571 274618051 -7575613 - HAL1 LINE L1 -1991 516 4 207 242 0 63 chr1 274618665 274618760 -7574904 + A-rich Low_complexity Low_complexity 3 91 0 2217 58 4 4 chr1 274619841 274620115 -7573549 - AluY SINE Alu -16 295 22 2038 187 147 5 chr1 274620560 274620964 -7572700 + MLT2B2 LTR ERVL 1 477 -38 432 0 0 0 chr1 274620964 274621012 -7572652 + (TG)n Simple_repeat Simple_repeat 2 49 0 2038 187 147 5 chr1 274621012 274621056 -7572608 + MLT2B2 LTR ERVL 477 513 -2 2616 62 0 0 chr1 274621063 274621372 -7572292 - AluY SINE Alu -2 309 1 375 292 150 17 chr1 274621382 274621632 -7572032 + L2 LINE L2 2779 3069 -244 592 252 105 34 chr1 274621705 274622070 -7571594 - L1MCc LINE L1 -4891 1532 1407 189 74 0 0 chr1 274622070 274622097 -7571567 + (TG)n Simple_repeat Simple_repeat 2 28 0 592 252 105 34 chr1 274622097 274622250 -7571414 - L1MCc LINE L1 -5016 1407 1266 199 77 26 26 chr1 274622555 274622594 -7571070 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 256 265 44 0 chr1 274622939 274623007 -7570657 - L1MCc LINE L1 -6013 410 340 329 279 49 20 chr1 274623065 274623269 -7570395 - L1MCc LINE L1 -6179 244 35 186 164 82 66 chr1 274625296 274625357 -7568307 - MIR3 SINE MIR -15 193 132 211 211 0 0 chr1 274625980 274626018 -7567646 + GA-rich Low_complexity Low_complexity 3 40 0 2503 64 0 0 chr1 274626417 274626713 -7566951 + AluY SINE Alu 1 296 -15 322 316 57 62 chr1 274626964 274627173 -7566491 - HAL1b LINE L1 -1115 233 26 209 52 35 86 chr1 274628195 274628253 -7565411 + (TATAA)n Simple_repeat Simple_repeat 2 56 0 190 189 19 75 chr1 274628506 274628559 -7565105 - MIR SINE MIR -1 261 212 2337 216 41 36 chr1 274628564 274629079 -7564585 - L1MD1 LINE L1 0 6636 6125 2124 201 46 31 chr1 274629079 274629537 -7564127 + MLT1C LTR MaLR 3 467 0 2337 216 41 36 chr1 274629537 274629577 -7564087 - L1MD1 LINE L1 -511 6125 6087 1890 143 7 29 chr1 274629577 274629884 -7563780 - AluJb SINE Alu -11 301 2 2337 216 41 36 chr1 274629884 274629990 -7563674 - L1MD1 LINE L1 -549 6087 5971 4139 140 46 6 chr1 274629991 274630707 -7562957 + Tigger2 DNA MER2_type 1 745 -1973 551 141 74 0 chr1 274630772 274630893 -7562771 + Tigger2 DNA MER2_type 2461 2590 -128 324 255 20 0 chr1 274630893 274630991 -7562673 - L1MD1 LINE L1 -1552 4988 4889 348 198 123 0 chr1 274630999 274631080 -7562584 + Tigger2 DNA MER2_type 2574 2664 -54 1743 157 6 22 chr1 274631093 274631405 -7562259 - L1PA16 LINE L1 -29 6137 5831 537 221 20 80 chr1 274631405 274631604 -7562060 - L1MD1 LINE L1 -1755 4785 4599 6600 207 82 28 chr1 274631704 274633178 -7560486 - L1MD1 LINE L1 -4622 1918 328 2474 84 0 0 chr1 274633178 274633488 -7560176 - AluY SINE Alu -1 310 1 6600 207 82 28 chr1 274633488 274633818 -7559846 - L1MD1 LINE L1 -6212 328 17 908 242 33 5 chr1 274633818 274634029 -7559635 - MIR SINE MIR -45 217 1 251 246 16 0 chr1 274634581 274634642 -7559022 - MIR SINE MIR -93 115 54 2918 71 0 6 chr1 274635554 274635919 -7557745 + THE1B LTR MaLR 1 363 -1 279 93 0 0 chr1 274636040 274636083 -7557581 + (CA)n Simple_repeat Simple_repeat 1 43 0 350 303 48 21 chr1 274636541 274636686 -7556978 - MIR SINE MIR -93 169 21 352 316 0 11 chr1 274639013 274639108 -7554556 + MIR SINE MIR 46 139 -123 2334 86 16 0 chr1 274639889 274640192 -7553472 - AluSq SINE Alu -5 308 1 2105 117 27 27 chr1 274640317 274640686 -7552978 - Tigger3b DNA MER2_type -684 547 179 213 229 82 16 chr1 274641344 274641405 -7552259 - MIR SINE MIR -55 153 89 471 199 6 12 chr1 274641551 274641717 -7551947 + (CA)n Simple_repeat Simple_repeat 1 165 0 311 250 0 19 chr1 274641753 274641913 -7551751 + (CA)n Simple_repeat Simple_repeat 2 158 0 198 256 0 0 chr1 274641944 274642022 -7551642 + (CA)n Simple_repeat Simple_repeat 2 79 0 249 294 0 0 chr1 274642095 274642272 -7551392 + (CA)n Simple_repeat Simple_repeat 2 178 0 300 308 112 9 chr1 274643097 274643204 -7550460 + L2 LINE L2 3181 3298 -15 282 29 0 0 chr1 274643205 274643240 -7550424 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2451 84 3 0 chr1 274644529 274644839 -7548825 + AluSq SINE Alu 3 313 0 711 136 0 0 chr1 274645779 274645926 -7547738 + (TG)n Simple_repeat Simple_repeat 1 147 0 646 267 0 7 chr1 274647576 274647722 -7545942 - L2 LINE L2 -1 3312 3168 7524 116 23 5 chr1 274647747 274648927 -7544737 + Tigger1 DNA MER2_type 19 1219 -1199 6016 137 16 29 chr1 274648929 274650033 -7543631 + Tigger1 DNA MER2_type 1328 2417 -1 633 351 105 3 chr1 274650202 274650507 -7543157 - L2 LINE L2 -558 2756 2421 327 104 0 0 chr1 274650510 274650558 -7543106 + (T)n Simple_repeat Simple_repeat 1 48 0 1971 209 7 7 chr1 274650983 274651433 -7542231 - L1 LINE L1 -1857 4289 3840 491 208 80 8 chr1 274651483 274651608 -7542056 - MER21B LTR ERV1 -52 811 678 * 1726 185 44 28 chr1 274651603 274651993 -7541671 - MER21B LTR ERV1 -465 398 3 1016 218 8 0 chr1 274651999 274652233 -7541431 - L1 LINE L1 -2311 3835 3600 1717 204 85 55 chr1 274652235 274652822 -7540842 + MER63 DNA MER1_type 457 1061 0 2266 101 0 58 chr1 274653867 274654195 -7539469 - AluSp SINE Alu -2 311 3 29 0 0 0 chr1 274654930 274654959 -7538705 + AT_rich Low_complexity Low_complexity 1 29 0 842 213 0 0 chr1 274654960 274655110 -7538554 - FRAM SINE Alu -26 150 1 22 35 0 0 chr1 274655117 274655146 -7538518 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 274655196 274655225 -7538439 + AT_rich Low_complexity Low_complexity 1 29 0 2369 81 0 0 chr1 274655232 274655527 -7538137 + AluSg SINE Alu 1 295 -15 191 363 137 9 chr1 274655552 274655764 -7537900 + L2 LINE L2 2847 3085 -187 241 271 0 0 chr1 274656047 274656106 -7537558 - L2 LINE L2 -6 3266 3208 196 329 78 87 chr1 274657156 274657478 -7536186 + L2 LINE L2 2657 2975 -339 676 288 23 0 chr1 274659336 274659513 -7534151 + MIR SINE MIR 39 219 -43 1276 190 137 0 chr1 274662084 274662347 -7531317 + AluJb SINE Alu 2 300 -2 514 118 21 0 chr1 274662372 274662465 -7531199 + GA-rich Low_complexity Low_complexity 4 98 0 221 365 59 0 chr1 274663282 274663367 -7530297 + MIR SINE MIR 58 147 -61 2412 78 3 0 chr1 274664977 274665284 -7528380 - AluY SINE Alu -3 308 1 547 352 61 22 chr1 274665352 274665713 -7527951 + L3 LINE CR1 696 1070 -507 911 178 0 6 chr1 274665802 274665976 -7527688 + L1PA16 LINE L1 5970 6142 -24 353 257 262 15 chr1 274666360 274666566 -7527098 + MIR SINE MIR 5 261 -1 736 359 87 7 chr1 274667216 274667653 -7526011 + L3 LINE CR1 1099 1570 -7 335 119 0 17 chr1 274669072 274669131 -7524533 + (TA)n Simple_repeat Simple_repeat 1 58 0 182 289 92 0 chr1 274669542 274669618 -7524046 - L3b LINE CR1 -130 1453 1371 186 43 0 0 chr1 274670734 274670757 -7522907 + (CA)n Simple_repeat Simple_repeat 2 24 0 479 261 0 31 chr1 274670758 274670888 -7522776 + MER63 DNA MER1_type 2 753 -309 337 308 99 33 chr1 274671839 274672021 -7521643 - MIR SINE MIR -57 205 12 559 330 49 5 chr1 274672034 274672219 -7521445 + MIR SINE MIR 4 196 -66 203 111 48 16 chr1 274673746 274673809 -7519855 + (TA)n Simple_repeat Simple_repeat 1 65 0 3382 88 25 0 chr1 274673936 274674378 -7519286 - L1PA10 LINE L1 -6 6162 5710 978 299 140 12 chr1 274674534 274674956 -7518708 - MLT1J LTR MaLR 0 511 36 27 0 0 0 chr1 274675463 274675490 -7518174 + AT_rich Low_complexity Low_complexity 1 27 0 228 226 0 48 chr1 274675730 274675814 -7517850 + A-rich Low_complexity Low_complexity 1 80 0 283 253 143 0 chr1 274676214 274676305 -7517359 - MIR SINE MIR -73 189 86 253 322 138 0 chr1 274676318 274676470 -7517194 + MIR SINE MIR 56 228 -34 283 198 0 25 chr1 274676587 274676668 -7516996 + GA-rich Low_complexity Low_complexity 4 82 0 754 227 70 5 chr1 274676706 274676891 -7516773 - MIR SINE MIR -22 240 44 2105 139 10 0 chr1 274676915 274677218 -7516446 - AluSx SINE Alu -6 306 1 4556 148 28 50 chr1 274677767 274678025 -7515639 + L1MB3 LINE L1 5339 5601 -582 2396 77 0 0 chr1 274678025 274678322 -7515342 + AluY SINE Alu 1 297 -14 4556 148 28 50 chr1 274678322 274678926 -7514738 + L1MB3 LINE L1 5601 6182 -1 546 223 43 48 chr1 274679087 274679275 -7514389 + L1MC5 LINE L1 7720 7906 -55 308 209 209 0 chr1 274679544 274679649 -7514015 - MIR SINE MIR -119 143 17 221 239 43 0 chr1 274679866 274679912 -7513752 - L2 LINE L2 -18 3254 3207 3567 117 0 14 chr1 274679936 274680451 -7513213 + L1PA13 LINE L1 5651 6158 -5 473 304 74 70 chr1 274680451 274680792 -7512872 + Charlie8 DNA MER1_type 1860 2205 -212 1987 104 42 3 chr1 274680792 274681079 -7512585 + AluSc SINE Alu 1 298 -11 473 304 74 70 chr1 274681079 274681197 -7512467 + Charlie8 DNA MER1_type 2205 2321 -96 252 297 47 74 chr1 274681327 274681475 -7512189 + L2 LINE L2 3129 3272 0 301 245 128 20 chr1 274681581 274681683 -7511981 - L2 LINE L2 0 3313 3201 206 250 201 65 chr1 274681667 274681851 -7511813 + MIR SINE MIR 39 247 -15 * 302 326 85 16 chr1 274682320 274682449 -7511215 - MIR3 SINE MIR -67 141 4 1049 205 5 29 chr1 274683076 274683286 -7510378 - MER3 DNA MER1_type 0 209 5 441 284 52 0 chr1 274683607 274683723 -7509941 + MIR3 SINE MIR 81 202 -6 446 346 19 35 chr1 274684072 274684337 -7509327 - MIR SINE MIR -1 261 7 848 189 0 0 chr1 274685674 274685806 -7507858 + FLAM_A SINE Alu 2 133 0 1896 149 0 17 chr1 274686183 274686484 -7507180 + AluJo SINE Alu 1 296 -16 302 278 157 36 chr1 274691685 274691908 -7501756 - L1M2 LINE L1 -6094 755 506 305 225 11 0 chr1 274692557 274692646 -7501018 + (TGGA)n Simple_repeat Simple_repeat 3 92 0 468 0 0 0 chr1 274692715 274692767 -7500897 + (TTA)n Simple_repeat Simple_repeat 3 54 0 419 303 69 0 chr1 274693572 274693717 -7499947 + L2 LINE L2 218 372 -2942 308 193 26 35 chr1 274693936 274694050 -7499614 + (TA)n Simple_repeat Simple_repeat 2 114 0 1006 269 157 32 chr1 274694114 274694523 -7499141 + L2 LINE L2 1865 2324 -990 244 272 117 19 chr1 274694535 274694638 -7499026 + L2 LINE L2 3201 3313 0 2028 115 47 0 chr1 274694691 274694969 -7498695 - AluSx SINE Alu -21 291 1 317 206 50 106 chr1 274694992 274695133 -7498531 - MIR SINE MIR -62 200 68 1722 285 63 26 chr1 274695133 274695719 -7497945 + MLT2E LTR ERVL 2 609 -19 207 291 23 47 chr1 274696095 274696181 -7497483 - MIR SINE MIR -154 108 25 824 266 13 4 chr1 274697189 274697418 -7496246 + L2 LINE L2 2466 2696 -618 3206 84 0 5 chr1 274697560 274698000 -7495664 + HERVH LTR ERV1 3556 3993 -3720 4379 136 3 6 chr1 274698002 274698666 -7494998 + HERVH LTR ERV1 4488 5149 -2564 1358 148 19 0 chr1 274698667 274698883 -7494781 + HERVH LTR ERV1 5600 5819 -1894 2390 103 48 13 chr1 274698883 274699260 -7494404 + HERVH LTR ERV1 7324 7713 0 2859 80 120 2 chr1 274699260 274699661 -7494003 + LTR7 LTR ERV1 1 448 -2 224 209 0 30 chr1 274700387 274700454 -7493210 + GA-rich Low_complexity Low_complexity 4 68 0 340 281 89 58 chr1 274700798 274701022 -7492642 + MLT1J1 LTR MaLR 192 422 -24 383 371 116 4 chr1 274701083 274701350 -7492314 + L2 LINE L2 3004 3300 -13 287 209 58 4 chr1 274701689 274701774 -7491890 + MIR SINE MIR 53 141 -67 1815 138 25 21 chr1 274701787 274701951 -7491713 - MSTA LTR MaLR 0 428 261 2601 135 70 2 chr1 274701951 274702352 -7491312 - MSTA LTR MaLR 0 428 1 1815 138 25 21 chr1 274702352 274702470 -7491194 - MSTA LTR MaLR -167 261 145 198 0 0 0 chr1 274702837 274702859 -7490805 + (TG)n Simple_repeat Simple_repeat 1 22 0 792 242 222 20 chr1 274702979 274703398 -7490266 - MLT1H LTR MaLR 0 549 1 932 234 44 40 chr1 274703523 274703797 -7489867 - LTR16A1 LTR ERVL 0 457 183 27 0 0 0 chr1 274704076 274704103 -7489561 + AT_rich Low_complexity Low_complexity 1 27 0 7729 219 47 22 chr1 274704722 274706409 -7487255 + MLT1A1-int LTR MaLR 8 1735 0 1333 217 56 42 chr1 274706409 274706769 -7486895 + MLT1A1 LTR MaLR 1 365 0 254 275 11 55 chr1 274707274 274707365 -7486299 - MIR SINE MIR -6 256 170 2652 116 22 0 chr1 274708560 274708915 -7484749 + THE1B LTR MaLR 1 363 -1 413 289 55 69 chr1 274709037 274709266 -7484398 + MIR SINE MIR 12 256 -6 2245 205 46 48 chr1 274709690 274709950 -7483714 - MLT2B1 LTR ERVL 0 520 261 1837 134 19 8 chr1 274709950 274710218 -7483446 + AluSg SINE Alu 1 271 -39 2245 205 46 48 chr1 274710218 274710478 -7483186 - MLT2B1 LTR ERVL -259 261 1 25205 159 20 24 chr1 274710480 274714748 -7478916 - ERVL-B1 LTR ERVL -9 5755 1505 1063 189 17 0 chr1 274714740 274714915 -7478749 - ERVL LTR ERVL -3441 2323 2146 * 6751 181 23 40 chr1 274714918 274716203 -7477461 - ERVL LTR ERVL -4252 1512 249 462 150 8 92 chr1 274716448 274716553 -7477111 - MER67C LTR ERV1 -2 708 614 1360 130 125 14 chr1 274716553 274716942 -7476722 - LTR54B LTR ERV1 -2 496 1 * 3202 166 53 8 chr1 274716942 274717517 -7476147 - MER67C LTR ERV1 -97 613 13 4507 158 45 9 chr1 274717520 274718324 -7475340 - MER6 DNA MER2_type -1 864 32 249 227 0 0 chr1 274719060 274719104 -7474560 - MER6 DNA MER2_type -28 837 794 286 316 84 13 chr1 274719228 274719383 -7474281 - L2 LINE L2 -41 3272 3107 2144 138 3 0 chr1 274720751 274721063 -7472601 + AluSq SINE Alu 1 313 0 1212 201 104 36 chr1 274721267 274721576 -7472088 - MSTD LTR MaLR -2 394 65 319 118 78 0 chr1 274721838 274721889 -7471775 + MSTC LTR MaLR 1 55 -373 578 327 75 1 chr1 274722127 274722348 -7471316 + MIR SINE MIR 23 262 0 1700 219 112 43 chr1 274723374 274723511 -7470153 + MER92B LTR ERV1 36 162 -474 1921 178 28 3 chr1 274723511 274723865 -7469799 + MLT1A1 LTR MaLR 3 365 0 1700 219 112 43 chr1 274723865 274724140 -7469524 + MER92B LTR ERV1 162 500 -136 2231 122 0 10 chr1 274724140 274724451 -7469213 + AluSx SINE Alu 1 308 -4 1700 219 112 43 chr1 274724451 274724599 -7469065 + MER92B LTR ERV1 500 636 0 259 340 133 21 chr1 274724663 274724851 -7468813 - L2 LINE L2 0 3313 3105 688 154 15 29 chr1 274724851 274724987 -7468677 - Tigger7 DNA MER2_type 0 2491 2358 2449 84 6 0 chr1 274725023 274725334 -7468330 - AluSp SINE Alu 0 313 1 2125 190 18 27 chr1 274725334 274725670 -7467994 - Tigger7 DNA MER2_type -2044 443 110 1982 150 0 10 chr1 274725670 274725976 -7467688 - AluJb SINE Alu -9 303 1 2125 190 18 27 chr1 274725976 274726086 -7467578 - Tigger7 DNA MER2_type -2377 110 1 2876 108 21 16 chr1 274726168 274726594 -7467070 - MSTA LTR MaLR 0 428 1 1278 302 49 4 chr1 274726604 274726983 -7466681 - L2 LINE L2 -312 2960 2571 287 280 45 57 chr1 274726984 274727141 -7466523 - L2 LINE L2 -916 2398 2244 2172 91 0 14 chr1 274727391 274727709 -7465955 + AluSg SINE Alu 1 314 0 892 249 164 0 chr1 274727921 274728214 -7465450 + L2 LINE L2 2973 3313 0 23 0 0 0 chr1 274729980 274730003 -7463661 + AT_rich Low_complexity Low_complexity 1 23 0 416 328 63 6 chr1 274731187 274731361 -7462303 - MIR3 SINE MIR -6 202 19 396 149 237 9 chr1 274731406 274731520 -7462144 - MER104 DNA Tc2 -1 179 40 31 68 0 0 chr1 274731520 274731579 -7462085 + AT_rich Low_complexity Low_complexity 1 59 0 2401 100 0 0 chr1 274731654 274731965 -7461699 - AluSx SINE Alu -1 311 1 5323 153 39 11 chr1 274732169 274733218 -7460446 - L1MC2 LINE L1 -3 6341 5263 22 35 0 0 chr1 274733336 274733365 -7460299 + AT_rich Low_complexity Low_complexity 1 29 0 1078 301 127 8 chr1 274733710 274734112 -7459552 + L2 LINE L2 2831 3280 -33 2189 85 7 3 chr1 274734946 274735311 -7458353 - AluSp SINE Alu 0 366 1 261 359 29 0 chr1 274735421 274735524 -7458140 + MIR SINE MIR 35 140 -122 352 312 15 11 chr1 274736041 274736180 -7457484 - MIR SINE MIR -61 147 10 240 327 163 23 chr1 274736218 274736475 -7457189 + L3 LINE CR1 2 294 -1283 * 274 343 133 58 chr1 274736450 274736879 -7456785 - L2 LINE L2 -8 3264 2804 * 1036 301 53 135 chr1 274736865 274736912 -7456752 + L3 LINE CR1 203 252 -1325 2025 143 3 3 chr1 274736912 274737213 -7456451 - AluSx SINE Alu -11 301 1 1036 301 53 135 chr1 274737213 274737774 -7455890 + L3 LINE CR1 252 858 -719 2036 168 14 11 chr1 274737774 274738138 -7455526 + MLT1A1 LTR MaLR 1 365 0 1036 301 53 135 chr1 274738138 274739021 -7454643 + L3 LINE CR1 858 1572 -5 2285 85 3 20 chr1 274739070 274739376 -7454288 + AluSg SINE Alu 1 301 -9 448 332 51 60 chr1 274741245 274741561 -7452103 + L2 LINE L2 2381 2693 -621 2102 129 31 0 chr1 274741561 274741887 -7451777 + MER7A DNA MER2_type 13 346 0 507 320 6 23 chr1 274741889 274742061 -7451603 + L2 LINE L2 2699 2867 -447 260 283 52 79 chr1 274742093 274742422 -7451242 + L1MB7 LINE L1 3588 3907 -2239 364 220 22 11 chr1 274742427 274742518 -7451146 - MLT1I LTR MaLR 0 409 318 457 297 17 0 chr1 274742666 274742784 -7450880 + MIR3 SINE MIR 79 198 -10 558 270 103 23 chr1 274743318 274743534 -7450130 + MIR SINE MIR 2 230 -32 2559 121 33 14 chr1 274744518 274744940 -7448724 + MSTB1 LTR MaLR 1 430 -2 237 185 161 0 chr1 274745705 274745786 -7447878 + L1MC4a LINE L1 5344 5437 -2371 1384 226 6 3 chr1 274745786 274746122 -7447542 + L1MB7 LINE L1 4575 4911 -1235 * 2986 211 71 16 chr1 274746119 274746198 -7447466 + L1MB7 LINE L1 5198 5271 -913 2182 129 0 0 chr1 274746198 274746501 -7447163 + AluSx SINE Alu 1 303 -9 2986 211 71 16 chr1 274746501 274747355 -7446309 + L1MB7 LINE L1 5271 6173 -11 1061 306 76 2 chr1 274747395 274747843 -7445821 + L1MC4a LINE L1 5431 5911 -1897 330 324 19 47 chr1 274747909 274748122 -7445542 + MLT1I LTR MaLR 59 265 -144 2134 109 11 0 chr1 274749226 274749511 -7444153 - AluSg SINE Alu -22 288 1 3620 82 0 104 chr1 274750735 274751229 -7442435 + MER41A LTR ERV1 1 420 -134 1611 101 0 4 chr1 274751229 274751457 -7442207 - AluY SINE Alu 0 311 85 3620 82 0 104 chr1 274751457 274751580 -7442084 + MER41A LTR ERV1 420 554 0 305 289 54 40 chr1 274752269 274752418 -7441246 + L1MEc LINE L1 790 940 -5456 1687 258 33 13 chr1 274752689 274753290 -7440374 + L1MEc LINE L1 2346 2958 -3257 489 266 82 55 chr1 274753458 274754163 -7439501 + L1MEc LINE L1 2528 3213 -3002 1906 146 3 7 chr1 274754163 274754450 -7439214 + AluJb SINE Alu 1 286 -26 489 266 82 55 chr1 274754450 274754535 -7439129 + L1MEc LINE L1 3213 3294 -2921 1973 142 0 3 chr1 274754535 274754817 -7438847 + AluSx SINE Alu 1 281 -31 252 0 0 0 chr1 274754820 274754848 -7438816 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 489 266 82 55 chr1 274754848 274755039 -7438625 + L1MEc LINE L1 3295 3761 -2454 1407 153 103 29 chr1 274755154 274755522 -7438142 - THE1B LTR MaLR -2 373 1 1119 261 89 38 chr1 274755567 274755731 -7437933 + L1M4 LINE L1 3572 3726 -2420 2223 126 0 7 chr1 274755731 274756041 -7437623 - AluSx SINE Alu -4 308 1 1119 261 89 38 chr1 274756041 274756249 -7437415 + L1M4 LINE L1 3726 3922 -2224 225 94 0 0 chr1 274756249 274756281 -7437383 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1119 261 89 38 chr1 274756281 274756590 -7437074 + L1M4 LINE L1 3922 4289 -1857 506 319 44 31 chr1 274756605 274756991 -7436673 - HERV16 LTR ERVL -3541 1455 1065 264 347 29 55 chr1 274757108 274757382 -7436282 - HERV16 LTR ERVL -3977 1019 753 303 344 95 46 chr1 274758810 274759179 -7434485 + L2 LINE L2 2288 2674 -640 395 287 8 54 chr1 274759201 274759230 -7434434 + MIR SINE MIR 7 36 -226 2156 64 0 0 chr1 274759230 274759497 -7434167 + AluY SINE Alu 1 267 -44 395 287 8 54 chr1 274759497 274759596 -7434068 + MIR SINE MIR 36 129 -133 210 278 69 0 chr1 274760217 274760289 -7433375 - MIR3 SINE MIR -21 187 111 1122 220 123 24 chr1 274760336 274760759 -7432905 - MLT1C LTR MaLR -2 465 1 342 324 117 50 chr1 274760858 274761080 -7432584 + MIR SINE MIR 24 260 -2 455 216 142 32 chr1 274761657 274761847 -7431817 + LTR16A LTR ERVL 7 217 -233 510 281 43 18 chr1 274762177 274762341 -7431323 - MIR SINE MIR -82 180 13 258 105 0 0 chr1 274762720 274762758 -7430906 + (TCC)n Simple_repeat Simple_repeat 2 39 0 467 288 79 6 chr1 274762955 274763132 -7430532 + MIR SINE MIR 71 260 -2 1479 256 38 2 chr1 274763766 274764219 -7429445 + L1ME3A LINE L1 5263 5731 -439 991 165 41 10 chr1 274764220 274764414 -7429250 - MER20 DNA MER1_type -3 216 17 445 322 106 17 chr1 274764442 274764743 -7428921 + L1ME3A LINE L1 5722 6049 -121 2000 135 3 0 chr1 274764859 274765155 -7428509 + AluSx SINE Alu 1 297 -15 1084 254 59 63 chr1 274765997 274766401 -7427263 + MLT1H1 LTR MaLR 17 420 -135 2382 84 0 0 chr1 274766401 274766700 -7426964 + AluY SINE Alu 1 299 -12 1084 254 59 63 chr1 274766700 274766822 -7426842 + MLT1H1 LTR MaLR 420 541 -14 269 310 58 0 chr1 274766880 274766967 -7426697 - L2 LINE L2 -10 3262 3171 183 360 60 20 chr1 274767122 274767222 -7426442 + MIR SINE MIR 48 151 -57 2595 36 7 0 chr1 274769253 274769555 -7424109 - AluY SINE Alu -7 304 1 332 285 39 39 chr1 274769721 274769900 -7423764 + MER90 LTR ERV1 419 597 -17 979 234 23 78 chr1 274770002 274770393 -7423271 + MLT2B1 LTR ERVL 1 465 -55 207 0 0 0 chr1 274770393 274770416 -7423248 + (TC)n Simple_repeat Simple_repeat 2 24 0 979 234 23 78 chr1 274770416 274770433 -7423231 + MLT2B1 LTR ERVL 465 481 -39 27 0 0 0 chr1 274770433 274770460 -7423204 + AT_rich Low_complexity Low_complexity 1 27 0 267 190 13 25 chr1 274770477 274770556 -7423108 + (TA)n Simple_repeat Simple_repeat 2 79 0 314 138 69 0 chr1 274770559 274770617 -7423047 + MLT2B1 LTR ERVL 459 520 0 413 294 39 39 chr1 274771911 274772091 -7421573 - MLT1J LTR MaLR -106 405 226 2668 99 3 6 chr1 274772679 274773044 -7420620 + THE1B LTR MaLR 1 364 0 508 284 19 19 chr1 274773907 274774062 -7419602 - MIR SINE MIR -95 167 13 363 44 0 0 chr1 274775205 274775250 -7418414 + (TG)n Simple_repeat Simple_repeat 1 45 0 5201 26 0 12 chr1 274776358 274776936 -7416728 + SVA Other Other 816 1386 0 598 217 31 0 chr1 274777068 274777197 -7416467 - FLAM_A SINE Alu 0 133 1 37 0 0 0 chr1 274777249 274777286 -7416378 + AT_rich Low_complexity Low_complexity 1 37 0 680 234 118 80 chr1 274778003 274778517 -7415147 + L2 LINE L2 2664 3313 0 266 293 88 40 chr1 274778656 274778801 -7414863 + MIR SINE MIR 7 151 -57 2494 86 0 0 chr1 274779386 274779690 -7413974 + AluSx SINE Alu 1 304 -8 2410 118 31 14 chr1 274780321 274780678 -7412986 + THE1B LTR MaLR 2 364 0 337 277 65 26 chr1 274780893 274781048 -7412616 + MER103 DNA DNA 4 164 -2 1303 144 54 50 chr1 274781073 274781147 -7412517 - L1MC2 LINE L1 -5 6339 6267 2259 110 3 7 chr1 274781147 274781456 -7412208 - AluSx SINE Alu -4 308 1 1303 144 54 50 chr1 274781456 274781679 -7411985 - L1MC2 LINE L1 -77 6267 6041 191 354 31 10 chr1 274781795 274781891 -7411773 - MIR SINE MIR -66 142 45 354 45 0 0 chr1 274782183 274782227 -7411437 + (CA)n Simple_repeat Simple_repeat 2 45 0 1722 179 7 0 chr1 274783451 274783731 -7409933 - AluJo SINE Alu -26 286 5 249 252 23 46 chr1 274783785 274783916 -7409748 - L1MC5 LINE L1 -44 7917 7790 1386 260 63 8 chr1 274783939 274784466 -7409198 - L1MB8 LINE L1 -7 6171 5616 836 189 39 4 chr1 274785373 274785657 -7408007 + MER52A LTR ERV1 383 594 -684 29546 110 15 54 chr1 274785658 274792058 -7401606 - L1PA7 LINE L1 -5 6149 12 615 164 15 52 chr1 274792067 274792201 -7401463 - L1P5 LINE L1 -371 5785 5657 21 36 0 0 chr1 274792411 274792439 -7401225 + AT_rich Low_complexity Low_complexity 1 28 0 328 323 6 56 chr1 274792935 274793118 -7400546 - MIR SINE MIR -56 206 34 2803 163 36 8 chr1 274793714 274794241 -7399423 + MER34 LTR ERV1 1 542 0 2689 75 120 2 chr1 274794559 274794960 -7398704 + LTR7 LTR ERV1 1 448 -2 4620 91 1 0 chr1 274794962 274795625 -7398039 + HERVH LTR ERV1 1 664 -7049 1209 118 6 0 chr1 274795727 274795896 -7397768 + AluSq SINE Alu 121 290 -23 24 32 0 0 chr1 274795896 274795927 -7397737 + AT_rich Low_complexity Low_complexity 1 31 0 1804 218 22 60 chr1 274795927 274796277 -7397387 + L1M4 LINE L1 4643 4960 -1186 2395 75 0 7 chr1 274796277 274796582 -7397082 + AluY SINE Alu 1 303 -8 1804 218 22 60 chr1 274796582 274796868 -7396796 + L1M4 LINE L1 4960 5255 -891 669 269 79 44 chr1 274796904 274796965 -7396699 + L1MEc LINE L1 1564 1621 -4775 1779 146 7 62 chr1 274796965 274797274 -7396390 + AluJb SINE Alu 1 292 -20 669 269 79 44 chr1 274797274 274797618 -7396046 + L1MEc LINE L1 1621 1983 -4413 832 265 78 19 chr1 274797711 274798466 -7395198 + L1MEc LINE L1 1996 2766 -3449 2685 137 15 23 chr1 274798468 274798941 -7394723 - L1PA13 LINE L1 0 6163 5695 1038 104 0 0 chr1 274799041 274799176 -7394488 + AluSg/x SINE Alu 172 306 -4 940 274 48 0 chr1 274799763 274800011 -7393653 + MER82 DNA MER2_type 394 653 0 303 355 134 19 chr1 274800011 274800273 -7393391 - L1ME LINE L1 -536 5585 5294 248 128 0 21 chr1 274800538 274800585 -7393079 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 982 88 0 0 chr1 274800937 274801062 -7392602 + AluSg/x SINE Alu 173 297 -15 1868 89 4 0 chr1 274801587 274801824 -7391840 - AluSg SINE Alu -15 295 58 497 212 21 95 chr1 274802406 274802595 -7391069 + MER5B DNA MER1_type 1 175 -3 2599 220 65 44 chr1 274803498 274803834 -7389830 - L1MC4a LINE L1 0 7808 7481 849 196 25 0 chr1 274803834 274803997 -7389667 - FAM SINE Alu -8 167 1 2599 220 65 44 chr1 274803997 274804655 -7389009 - L1MC4a LINE L1 -327 7481 6793 1863 188 28 86 chr1 274804989 274805559 -7388105 - LTR55 LTR ERV -11 537 1 209 353 76 17 chr1 274805899 274806018 -7387646 + MIR SINE MIR 53 178 -84 269 380 0 9 chr1 274806192 274806300 -7387364 + L2 LINE L2 3187 3293 -20 674 122 43 0 chr1 274806343 274806458 -7387206 + L1MB1 LINE L1 6035 6154 -14 2430 54 0 7 chr1 274806897 274807195 -7386469 + AluY SINE Alu 3 298 -13 180 0 0 0 chr1 274807626 274807646 -7386018 + (A)n Simple_repeat Simple_repeat 1 20 0 217 127 0 48 chr1 274810529 274810592 -7383072 + (CCA)n Simple_repeat Simple_repeat 3 62 0 203 167 33 33 chr1 274811073 274811133 -7382531 + CT-rich Low_complexity Low_complexity 3 62 0 701 128 40 16 chr1 274811500 274811625 -7382039 + THE1B LTR MaLR 1 128 -236 224 373 96 0 chr1 274811971 274812148 -7381516 - MIR SINE MIR -20 242 49 1558 161 0 39 chr1 274812162 274812447 -7381217 - AluJb SINE Alu -13 299 26 201 74 0 0 chr1 274813392 274813419 -7380245 + (TATG)n Simple_repeat Simple_repeat 4 30 0 1093 139 30 30 chr1 274813918 274814120 -7379544 - MER20 DNA MER1_type -4 215 14 1704 171 0 14 chr1 274815273 274815548 -7378116 - AluJb SINE Alu -8 304 34 228 182 0 0 chr1 274815689 274815733 -7377931 + (CA)n Simple_repeat Simple_repeat 1 44 0 24 32 0 0 chr1 274815982 274816013 -7377651 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr1 274816143 274816186 -7377478 + AT_rich Low_complexity Low_complexity 1 43 0 432 0 0 0 chr1 274817058 274817106 -7376558 + (TA)n Simple_repeat Simple_repeat 2 49 0 207 0 0 0 chr1 274818981 274819004 -7374660 + (GA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr1 274819713 274819745 -7373919 + AT_rich Low_complexity Low_complexity 1 32 0 472 244 49 32 chr1 274819870 274819993 -7373671 + L2 LINE L2 3188 3312 -1 2140 110 14 0 chr1 274821739 274822031 -7371633 + AluSq SINE Alu 1 296 -17 1903 114 222 6 chr1 274822627 274822979 -7370685 - MSTA LTR MaLR 0 428 1 315 0 0 0 chr1 274823076 274823111 -7370553 + (TG)n Simple_repeat Simple_repeat 2 36 0 437 322 33 25 chr1 274823348 274823593 -7370071 - L3b LINE CR1 -232 1351 1105 646 311 0 12 chr1 274823758 274823919 -7369745 - MER5B DNA MER1_type -16 162 4 834 209 111 90 chr1 274824169 274824557 -7369107 + MSTD LTR MaLR 1 396 0 499 336 183 38 chr1 274824592 274825601 -7368063 + L2 LINE L2 1812 2967 -347 275 338 0 0 chr1 274825674 274825748 -7367916 + L2 LINE L2 3235 3308 -5 310 356 58 0 chr1 274825874 274825978 -7367686 + L2 LINE L2 3136 3245 -27 586 241 235 0 chr1 274826343 274826513 -7367151 + MIR SINE MIR 32 241 -21 266 352 49 21 chr1 274826923 274827065 -7366599 - MIR3 SINE MIR 0 208 63 1959 162 0 7 chr1 274827628 274827937 -7365727 - AluJb SINE Alu -4 308 2 553 310 92 14 chr1 274828043 274828391 -7365273 + LTR16A LTR ERVL 51 438 -12 263 333 56 26 chr1 274828649 274828844 -7364820 + MLT1K LTR MaLR 114 314 -274 687 302 106 17 chr1 274828994 274829342 -7364322 - L3 LINE CR1 -878 699 321 190 146 73 0 chr1 274829386 274829427 -7364237 - L3 LINE CR1 -686 891 848 210 291 60 77 chr1 274829505 274829622 -7364042 + MIR3 SINE MIR 14 128 -80 1811 152 0 26 chr1 274829992 274830294 -7363370 - AluJb SINE Alu -18 294 1 2176 115 3 7 chr1 274830455 274830760 -7362904 - AluSq SINE Alu -9 304 1 262 298 24 0 chr1 274882397 274882481 -7311183 + MER94 DNA DNA 49 134 0 2270 142 9 0 chr1 274882619 274882964 -7310700 + MER7A DNA MER2_type 1 346 0 1013 271 32 0 chr1 274883723 274883974 -7309690 - MIR SINE MIR -1 261 3 223 15 0 138 chr1 274884567 274884632 -7309032 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 209 316 191 7 chr1 274884859 274884995 -7308669 - MIR SINE MIR -82 180 20 1484 201 0 7 chr1 274885035 274885308 -7308356 + AluJo SINE Alu 1 271 -41 486 49 0 0 chr1 274885322 274885383 -7308281 + (CA)n Simple_repeat Simple_repeat 2 62 0 325 264 0 91 chr1 274885471 274885581 -7308083 - L1MC5 LINE L1 -66 7895 7796 2259 159 174 148 chr1 274885717 274886262 -7307402 + L1MD3 LINE L1 6727 7423 -572 353 333 58 0 chr1 274886262 274886382 -7307282 + MLT1F1 LTR MaLR 5 131 -436 2259 159 174 148 chr1 274886382 274886634 -7307030 + L1MD3 LINE L1 7423 7667 -328 1659 192 15 15 chr1 274886638 274886966 -7306698 + MLT1A1 LTR MaLR 38 365 0 1456 153 29 55 chr1 274886972 274887279 -7306385 + L1MD3 LINE L1 7680 7978 -17 230 270 183 0 chr1 274888309 274888435 -7305229 - L1ME4a LINE L1 -2 6119 5971 255 61 0 0 chr1 274888453 274888486 -7305178 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr1 274888631 274888652 -7305012 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr1 274888823 274888855 -7304809 + AT_rich Low_complexity Low_complexity 1 32 0 733 184 41 7 chr1 274891316 274891463 -7302201 + MER104 DNA Tc2 29 180 0 2793 102 56 0 chr1 274891771 274892201 -7301463 + L1PA10 LINE L1 5709 6162 -6 2479 65 0 0 chr1 274892201 274892493 -7301171 - AluSc SINE Alu -17 292 1 295 209 45 9 chr1 274893250 274893360 -7300304 + (TA)n Simple_repeat Simple_repeat 2 115 0 245 251 53 116 chr1 274893426 274893633 -7300031 + L2 LINE L2 3120 3313 0 23 33 0 0 chr1 274893916 274893946 -7299718 + AT_rich Low_complexity Low_complexity 1 30 0 465 330 89 4 chr1 274896634 274896870 -7296794 - L1M4 LINE L1 -3681 2465 2210 465 244 16 16 chr1 274896937 274897064 -7296600 - MIR SINE MIR -23 239 113 391 261 83 26 chr1 274897693 274897923 -7295741 + HAL1 LINE L1 1096 1338 -1169 2288 264 96 35 chr1 274897936 274898964 -7294700 + HAL1 LINE L1 1405 2495 -12 585 313 152 34 chr1 274899029 274899582 -7294082 + L2 LINE L2 1541 2158 -1156 614 277 86 76 chr1 274899903 274900322 -7293342 + L2 LINE L2 2155 2577 -737 359 301 165 0 chr1 274900419 274900552 -7293112 - L2 LINE L2 -230 3083 2929 2775 118 23 5 chr1 274901325 274901756 -7291908 + L1PA13 LINE L1 5723 6161 -2 462 311 66 93 chr1 274902659 274903174 -7290490 + L1MEd LINE L1 593 1093 -5026 348 276 182 35 chr1 274903274 274903702 -7289962 + L1MEd LINE L1 2147 2637 -3492 2202 111 6 16 chr1 274903897 274904212 -7289452 + AluSx SINE Alu 1 312 0 817 254 77 98 chr1 274904232 274904672 -7288992 + L1ME3A LINE L1 5650 6080 -90 305 303 91 73 chr1 274904779 274905119 -7288545 + L1MC4a LINE L1 5830 6175 -1633 26 50 0 0 chr1 274906296 274906336 -7287328 + AT_rich Low_complexity Low_complexity 1 40 0 880 307 154 18 chr1 274907283 274908074 -7285590 - L2 LINE L2 0 3313 2411 896 310 70 29 chr1 274908161 274908577 -7285087 + L2 LINE L2 2418 2850 -464 2069 173 19 21 chr1 274911193 274911243 -7282421 - LTR31 LTR ERV1 -15 604 555 2351 130 34 3 chr1 274911243 274911596 -7282068 - THE1B LTR MaLR 0 364 1 2069 173 19 21 chr1 274911596 274911921 -7281743 - LTR31 LTR ERV1 -64 555 230 327 230 26 141 chr1 274912022 274912213 -7281451 - LTR31 LTR ERV1 -386 233 65 325 292 0 21 chr1 274912655 274912751 -7280913 + L1ME LINE L1 5513 5606 -515 1994 145 0 3 chr1 274912762 274913052 -7280612 + AluSx SINE Alu 1 289 -23 1695 188 10 0 chr1 274914447 274914740 -7278924 + AluJo SINE Alu 5 300 -12 468 318 4 54 chr1 274917125 274917364 -7276300 - L1ME LINE L1 -369 5801 5575 358 123 231 0 chr1 274917927 274917992 -7275672 - MADE1 DNA Mariner 0 80 1 692 309 21 13 chr1 274918056 274918292 -7275372 - MLT1G1 LTR MaLR -357 238 1 23 0 0 0 chr1 274918503 274918526 -7275138 + AT_rich Low_complexity Low_complexity 1 23 0 206 393 51 8 chr1 274918635 274918752 -7274912 + L2 LINE L2 3137 3258 -14 330 302 0 0 chr1 274918799 274918885 -7274779 - L2 LINE L2 0 3313 3228 1931 142 25 81 chr1 274918967 274919375 -7274289 - MLT1B LTR MaLR 0 390 6 298 373 59 25 chr1 274919416 274919620 -7274044 - L2 LINE L2 -243 3070 2860 184 200 0 50 chr1 274919606 274919646 -7274018 - L2 LINE L2 -579 2735 2698 * 615 338 136 19 chr1 274920223 274920848 -7272816 - L2 LINE L2 -619 2695 1942 441 263 19 110 chr1 274920933 274921343 -7272321 + L1ME3 LINE L1 5023 5395 -751 467 35 0 0 chr1 274921343 274921400 -7272264 + AluY SINE Alu 240 296 -14 546 283 114 61 chr1 274921401 274921889 -7271775 + L1ME3 LINE L1 5392 5911 -251 189 0 0 0 chr1 274921889 274921910 -7271754 + (CA)n Simple_repeat Simple_repeat 2 22 0 546 283 114 61 chr1 274921910 274921948 -7271716 + L1ME3 LINE L1 5911 5946 -216 931 128 0 0 chr1 274921949 274922074 -7271590 + FLAM_C SINE Alu 1 125 -18 315 293 33 93 chr1 274922168 274922383 -7271281 + L1ME3 LINE L1 5961 6162 0 26 0 0 0 chr1 274922597 274922623 -7271041 + AT_rich Low_complexity Low_complexity 1 26 0 1030 184 179 4 chr1 274922728 274922962 -7270702 + AluSx SINE Alu 2 276 -36 892 55 16 8 chr1 274922962 274923089 -7270575 + (GAAA)n Simple_repeat Simple_repeat 2 129 0 965 183 179 14 chr1 274923839 274924129 -7269535 + MER46C DNA MER2_type 1 338 0 246 298 105 58 chr1 274924330 274924501 -7269163 + MIR3 SINE MIR 21 199 -9 279 213 0 0 chr1 274925610 274925671 -7267993 - MER5A DNA MER1_type -84 105 45 189 94 0 0 chr1 274925886 274925918 -7267746 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 240 35 0 0 chr1 274925917 274925946 -7267718 + (GA)n Simple_repeat Simple_repeat 1 29 0 1849 150 7 7 chr1 274927147 274927434 -7266230 + AluJb SINE Alu 1 287 -25 27 0 0 0 chr1 274927434 274927461 -7266203 + AT_rich Low_complexity Low_complexity 1 27 0 597 158 44 94 chr1 274927800 274927966 -7265698 + ORSL DNA AcHobo 7 180 -95 591 53 0 0 chr1 274927966 274928041 -7265623 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 1565 164 40 18 chr1 274928042 274928317 -7265347 - AluSx SINE Alu -31 281 1 597 158 44 94 chr1 274928317 274928351 -7265313 + ORSL DNA AcHobo 179 199 -76 1881 135 0 43 chr1 274928485 274928789 -7264875 + AluSx SINE Alu 6 296 -16 204 125 0 0 chr1 274928936 274928968 -7264696 + (CA)n Simple_repeat Simple_repeat 2 33 0 1675 169 13 33 chr1 274929599 274929906 -7263758 + AluJb SINE Alu 1 301 -11 1367 205 15 11 chr1 274929940 274930213 -7263451 - AluJo SINE Alu -24 288 15 2129 82 0 38 chr1 274930390 274930712 -7262952 + AluSg SINE Alu 1 311 0 633 197 122 7 chr1 274931474 274931621 -7262043 + FRAM SINE Alu 1 164 -2 767 286 119 13 chr1 274931721 274931948 -7261716 - MIR SINE MIR -2 260 10 324 277 18 27 chr1 274932387 274932499 -7261165 + MER103 DNA DNA 8 118 -48 698 218 99 68 chr1 274932524 274932623 -7261041 - MER33 DNA MER1_type -2283 302 208 2069 106 46 0 chr1 274932623 274932907 -7260757 + AluSq SINE Alu 1 297 -16 698 218 99 68 chr1 274932907 274933100 -7260564 - MER33 DNA MER1_type -2377 208 1 22 56 0 0 chr1 274933223 274933259 -7260405 + AT_rich Low_complexity Low_complexity 1 36 0 295 141 47 0 chr1 274933538 274933602 -7260062 - L1MA10 LINE L1 -14 6320 6254 384 271 41 16 chr1 274933620 274933742 -7259922 + MIR3 SINE MIR 83 207 -1 1739 169 4 0 chr1 274936354 274936632 -7257032 + AluJo SINE Alu 3 281 -31 855 29 0 0 chr1 274936633 274936735 -7256929 + (GGAA)n Simple_repeat Simple_repeat 2 103 0 348 24 0 0 chr1 274936848 274936889 -7256775 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 216 0 0 0 chr1 274936892 274936916 -7256748 + (GGGAA)n Simple_repeat Simple_repeat 1 24 0 229 263 20 0 chr1 274938511 274938610 -7255054 + (TA)n Simple_repeat Simple_repeat 1 101 0 317 299 123 31 chr1 274939120 274939381 -7254283 + L3b LINE CR1 1150 1434 -149 1595 172 21 31 chr1 274939385 274939675 -7253989 + AluJo SINE Alu 5 291 -21 2227 110 0 3 chr1 274939865 274940166 -7253498 + AluSx SINE Alu 1 300 -12 377 274 0 10 chr1 274940971 274941073 -7252591 + MIR SINE MIR 137 237 -25 2089 174 0 8 chr1 274941134 274941502 -7252162 - MLT1A1 LTR MaLR 0 365 1 317 246 185 8 chr1 274941533 274941663 -7252001 + MIR SINE MIR 107 259 -3 489 183 10 0 chr1 274941886 274941990 -7251674 - L1MA8 LINE L1 -191 6100 5996 683 209 8 0 chr1 274942811 274942940 -7250724 + MER2 DNA MER2_type 1 130 -215 5244 147 34 9 chr1 274942967 274943920 -7249744 - L1MA3 LINE L1 0 6305 5330 28 0 0 0 chr1 274943920 274943948 -7249716 + AT_rich Low_complexity Low_complexity 1 28 0 10959 157 21 40 chr1 274943955 274945808 -7247856 - L1MA3 LINE L1 -784 5362 3560 2293 101 0 0 chr1 274945808 274946106 -7247558 - AluSc SINE Alu -9 300 3 10959 157 21 40 chr1 274946106 274946534 -7247130 - L1MA3 LINE L1 -2586 3560 3125 2812 148 21 0 chr1 274946594 274947061 -7246603 - L1PB3 LINE L1 -3 6151 5675 711 153 23 8 chr1 274947099 274947230 -7246434 - AluJb SINE Alu -179 133 1 12830 208 36 17 chr1 274947230 274952691 -7240973 - L1PBa LINE L1 -1005 5844 1178 2162 141 36 30 chr1 274952691 274953053 -7240611 - THE1B LTR MaLR 0 364 1 12830 208 36 17 chr1 274953053 274954206 -7239458 - L1PBa LINE L1 -5671 1178 48 235 186 0 68 chr1 274954249 274954308 -7239356 - L1PBa LINE L1 -6792 57 3 11642 186 21 26 chr1 274954310 274957547 -7236117 - L1 LINE L1 -3019 4087 202 410 93 0 70 chr1 274957555 274957641 -7236023 + MER2 DNA MER2_type 130 209 -136 23 0 0 0 chr1 274957825 274957848 -7235816 + AT_rich Low_complexity Low_complexity 1 23 0 2086 63 0 0 chr1 274957925 274958196 -7235468 - L1PA5 LINE L1 0 6154 5884 1751 39 0 0 chr1 274958196 274958403 -7235261 + L1P2 LINE L1 5394 5600 -554 2060 121 0 10 chr1 274958889 274959178 -7234486 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr1 274959178 274959205 -7234459 + AT_rich Low_complexity Low_complexity 1 27 0 226 214 54 0 chr1 274959205 274959261 -7234403 + MIR SINE MIR 138 196 -66 24 0 0 0 chr1 274959392 274959416 -7234248 + AT_rich Low_complexity Low_complexity 1 24 0 2060 143 13 0 chr1 274959421 274959728 -7233936 + AluSx SINE Alu 1 311 -1 2195 124 0 3 chr1 274960137 274960443 -7233221 - AluJb SINE Alu -5 307 3 204 240 0 0 chr1 274960571 274960621 -7233043 + T-rich Low_complexity Low_complexity 1 50 0 1938 127 7 16 chr1 274961016 274961323 -7232341 - MER1B DNA MER1_type 0 339 36 2011 94 58 4 chr1 274961412 274961688 -7231976 - AluSx SINE Alu -20 292 2 515 289 53 34 chr1 274961982 274962190 -7231474 + MIR SINE MIR 47 258 -4 276 30 0 0 chr1 274962266 274962299 -7231365 + (T)n Simple_repeat Simple_repeat 1 33 0 273 209 149 0 chr1 274963368 274963435 -7230229 + L3b LINE CR1 1276 1352 -231 284 294 139 44 chr1 274964675 274964855 -7228809 - L2 LINE L2 -2 3270 3074 674 62 45 0 chr1 274966652 274966764 -7226900 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 1331 165 109 4 chr1 274966772 274967020 -7226644 - AluSx SINE Alu -38 274 1 1645 151 84 25 chr1 274967470 274967827 -7225837 - MER34B LTR ERV1 0 565 188 306 313 23 47 chr1 274968938 274969066 -7224598 - L2 LINE L2 0 3272 3148 486 295 26 32 chr1 274969300 274969456 -7224208 + MLT1J2 LTR MaLR 277 431 -19 188 33 0 33 chr1 274969604 274969634 -7224030 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 29 70 0 0 chr1 274969703 274969760 -7223904 + AT_rich Low_complexity Low_complexity 1 57 0 371 253 182 19 chr1 274969938 274970092 -7223572 + MER5A DNA MER1_type 10 188 -1 1591 163 7 24 chr1 274970780 274971075 -7222589 - AluJo SINE Alu -22 290 1 394 292 107 43 chr1 274971175 274971408 -7222256 + MIR SINE MIR 13 260 -2 223 337 122 35 chr1 274972042 274972214 -7221450 + MIR3 SINE MIR 13 199 -9 23 33 0 0 chr1 274972992 274973022 -7220642 + AT_rich Low_complexity Low_complexity 1 30 0 326 67 0 0 chr1 274973187 274973232 -7220432 - MADE1 DNA Mariner 0 80 36 336 78 3 0 chr1 274973439 274973491 -7220173 + MADE1 DNA Mariner 36 80 0 272 307 0 27 chr1 274973634 274973709 -7219955 + MIR SINE MIR 31 103 -105 491 330 133 45 chr1 274974723 274975368 -7218296 - L2 LINE L2 -4 3268 2681 2215 94 7 11 chr1 274975368 274975706 -7217958 + AluSq SINE Alu 1 337 0 491 330 133 45 chr1 274975706 274976351 -7217313 - L2 LINE L2 -591 2681 1853 852 177 93 153 chr1 274976421 274976809 -7216855 - MLT1A2 LTR MaLR -54 337 1 1927 128 4 4 chr1 274978728 274979031 -7214633 + AluJo SINE Alu 10 312 0 242 212 106 0 chr1 274979473 274979539 -7214125 - L2 LINE L2 -18 3254 3182 26 0 0 0 chr1 274979838 274979864 -7213800 + AT_rich Low_complexity Low_complexity 1 26 0 517 321 76 21 chr1 274979970 274980207 -7213457 - L2 LINE L2 -620 2694 2445 2071 123 0 3 chr1 274980207 274980544 -7213120 + AluSq SINE Alu 1 336 0 273 308 13 0 chr1 274980782 274980860 -7212804 + MIR SINE MIR 37 115 -93 181 271 42 0 chr1 274981042 274981090 -7212574 + L2 LINE L2 3221 3270 -2 2069 125 4 0 chr1 274981178 274981457 -7212207 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr1 274981460 274981483 -7212181 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 838 147 38 4 chr1 274981494 274981764 -7211900 + GA-rich Low_complexity Low_complexity 1 279 0 394 237 139 51 chr1 274982276 274982491 -7211173 - L2 LINE L2 0 3313 3080 308 143 83 48 chr1 274983893 274983977 -7209687 - Charlie2 DNA MER1_type -32 2830 2744 189 176 73 103 chr1 274984132 274984200 -7209464 + L2 LINE L2 2903 2968 -345 431 281 63 91 chr1 274984206 274984459 -7209205 - L2 LINE L2 -108 3164 2919 214 306 24 24 chr1 274984546 274984631 -7209033 - L2 LINE L2 -4 3268 3184 382 255 0 57 chr1 274984771 274984912 -7208752 + MIR SINE MIR 71 203 -59 200 388 10 0 chr1 274985497 274985595 -7208069 - L2 LINE L2 -309 2963 2865 3222 136 24 3 chr1 274986414 274986962 -7206702 + LTR26 LTR ERV1 1 603 0 1071 186 57 36 chr1 274987133 274987381 -7206283 - MIR SINE MIR -7 255 3 236 0 0 0 chr1 274987688 274987713 -7205951 - LTR26 LTR ERV1 -240 363 339 2317 97 0 7 chr1 274987831 274988130 -7205534 + AluSx SINE Alu 1 297 -15 251 259 53 38 chr1 274990093 274990224 -7203440 + LTR16C LTR ERVL 359 491 0 238 294 77 51 chr1 274991002 274991198 -7202466 - MIR SINE MIR -46 216 18 32 0 0 0 chr1 274991948 274991980 -7201684 + AT_rich Low_complexity Low_complexity 1 32 0 317 338 15 29 chr1 274992230 274992366 -7201298 - MER5A DNA MER1_type -18 171 38 23 0 0 0 chr1 274992916 274992939 -7200725 + AT_rich Low_complexity Low_complexity 1 23 0 232 281 18 0 chr1 274993300 274993357 -7200307 + MER91A DNA MER1_type 109 166 -30 523 140 178 0 chr1 274994164 274994271 -7199393 - MER33 DNA MER1_type 0 324 199 1622 204 41 9 chr1 274994272 274994615 -7199049 + MLT1A1 LTR MaLR 1 354 -11 830 166 83 0 chr1 274994624 274994805 -7198859 - MER33 DNA MER1_type -124 200 5 434 331 152 24 chr1 274995443 274995857 -7197807 - L2 LINE L2 -2782 532 66 485 294 162 18 chr1 274995973 274996219 -7197445 + MIR SINE MIR 1 258 -4 352 313 8 0 chr1 274996234 274996362 -7197302 - L1ME LINE L1 -430 5691 5563 197 333 52 21 chr1 274996479 274996575 -7197089 + MER5A DNA MER1_type 91 189 0 222 116 0 0 chr1 274997023 274997066 -7196598 + (A)n Simple_repeat Simple_repeat 1 43 0 382 346 105 22 chr1 274997167 274997491 -7196173 + L2 LINE L2 2465 2815 -499 379 285 171 10 chr1 274998481 274998674 -7194990 + MIR SINE MIR 7 230 -32 750 259 96 4 chr1 274998735 274998974 -7194690 + MIR SINE MIR 2 262 0 277 237 13 26 chr1 274998973 274999049 -7194615 + L2 LINE L2 3234 3308 -5 * 886 214 73 10 chr1 274999750 274999956 -7193708 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 275001168 275001189 -7192475 + AT_rich Low_complexity Low_complexity 1 21 0 184 245 92 82 chr1 275001381 275001479 -7192185 + MIR SINE MIR 94 192 -70 196 321 0 86 chr1 275002268 275002349 -7191315 + L2 LINE L2 3235 3308 -5 288 284 165 47 chr1 275004039 275004166 -7189498 - MIR SINE MIR -65 197 56 2339 115 53 31 chr1 275005953 275006309 -7187355 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr1 275010898 275010920 -7182744 + AT_rich Low_complexity Low_complexity 1 22 0 330 341 22 28 chr1 275011610 275011789 -7181875 - MIR3 SINE MIR -11 197 20 202 136 17 34 chr1 275013683 275013742 -7179922 + (CGGGG)n Simple_repeat Simple_repeat 2 59 0 335 292 154 58 chr1 275014144 275014507 -7179157 + L1M2 LINE L1 590 987 -5862 213 233 0 0 chr1 275014621 275014664 -7179000 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 205 235 0 20 chr1 275015724 275015775 -7177889 + L2 LINE L2 3264 3313 0 353 252 19 19 chr1 275015817 275015920 -7177744 - L2 LINE L2 -92 3221 3119 1152 152 5 30 chr1 275015924 275016122 -7177542 + AluJo SINE Alu 1 193 -119 3233 71 112 0 chr1 275016146 275016583 -7177081 - LTR19A LTR ERV1 0 486 1 275 203 169 74 chr1 275016611 275016759 -7176905 - L2 LINE L2 -386 2928 2767 2476 128 72 43 chr1 275017031 275017445 -7176219 + MSTB LTR MaLR 1 426 0 5297 152 34 31 chr1 275017447 275018261 -7175403 + L1MB4 LINE L1 4779 5609 -571 1784 142 3 28 chr1 275018261 275018549 -7175115 + AluJo SINE Alu 15 295 -17 5297 152 34 31 chr1 275018549 275019114 -7174550 + L1MB4 LINE L1 5609 6171 -9 1683 112 0 0 chr1 275019609 275019824 -7173840 + AluSx SINE Alu 2 216 -96 2323 73 25 0 chr1 275020980 275021266 -7172398 + AluY SINE Alu 1 293 -18 1299 225 85 83 chr1 275021363 275021856 -7171808 + HAL1 LINE L1 1383 1876 -631 492 261 77 0 chr1 275022860 275022990 -7170674 + L2 LINE L2 1861 2000 -1314 285 176 0 4 chr1 275223338 275223392 -6970272 + FAM SINE Alu 125 166 -9 2092 108 24 0 chr1 275223415 275223710 -6969954 - AluSx SINE Alu -9 303 2 239 241 30 139 chr1 275223716 275223810 -6969854 - L2 LINE L2 0 3313 3243 2065 104 7 7 chr1 275223810 275224107 -6969557 + AluSq SINE Alu 1 297 -16 239 241 30 139 chr1 275224107 275224178 -6969486 - L2 LINE L2 -70 3243 3166 287 250 173 0 chr1 275224440 275224596 -6969068 - L1M4 LINE L1 -1877 4269 4087 253 306 14 0 chr1 275224598 275224670 -6968994 - L1M4 LINE L1 -2019 4127 4055 753 182 57 68 chr1 275224673 275224849 -6968815 - FAM SINE Alu -1 174 1 1486 188 3 36 chr1 275224849 275225158 -6968506 - AluJb SINE Alu -13 299 1 2366 70 3 0 chr1 275225231 275225529 -6968135 - AluY SINE Alu -12 299 1 678 175 79 0 chr1 275225789 275225903 -6967761 - FLAM_A SINE Alu -10 123 1 841 160 0 0 chr1 275225927 275226058 -6967606 + FLAM_C SINE Alu 3 133 0 2338 62 7 10 chr1 275226164 275226472 -6967192 - AluY SINE Alu -4 307 1 1012 223 26 31 chr1 275226472 275226701 -6966963 - MLT1D LTR MaLR -165 340 113 2132 109 0 0 chr1 275226747 275227041 -6966623 - AluSg SINE Alu -16 294 1 759 142 17 0 chr1 275227049 275227169 -6966495 - FLAM_C SINE Alu -11 122 1 454 229 8 57 chr1 275227169 275227282 -6966382 - MLT1D LTR MaLR -511 115 7 243 0 0 0 chr1 275227575 275227602 -6966062 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 807 193 0 7 chr1 275227604 275227754 -6965910 - FRAM SINE Alu -30 146 1 180 279 0 33 chr1 275228166 275228227 -6965437 + L2 LINE L2 3254 3312 -1 2470 68 0 0 chr1 275228263 275228574 -6965090 - AluY SINE Alu 0 311 1 2253 98 0 13 chr1 275228617 275228934 -6964730 - AluSp SINE Alu 0 313 1 1114 173 9 31 chr1 275228938 275229164 -6964500 - AluJo SINE Alu -5 307 87 893 144 52 0 chr1 275229163 275229316 -6964348 - FRAM SINE Alu -16 160 1 * 37 39 0 0 chr1 275229431 275229482 -6964182 + AT_rich Low_complexity Low_complexity 1 51 0 1482 126 0 28 chr1 275229782 275230036 -6963628 + AluSx SINE Alu 1 247 -65 2019 110 7 10 chr1 275230261 275230560 -6963104 + AluSg SINE Alu 1 298 -12 1815 159 0 3 chr1 275231047 275231348 -6962316 + AluJo SINE Alu 1 300 -12 278 203 241 0 chr1 275231592 275231671 -6961993 + L2 LINE L2 3208 3305 -8 1817 293 115 34 chr1 275231743 275232722 -6960942 - ERVL LTR ERVL -1325 4439 3381 1444 175 24 4 chr1 275232840 275233167 -6960497 - L1MB3 LINE L1 -66 6117 5715 2331 84 0 0 chr1 275233181 275233478 -6960186 - AluSq SINE Alu -16 297 1 38 22 0 0 chr1 275233533 275233578 -6960086 + AT_rich Low_complexity Low_complexity 1 45 0 1192 133 33 0 chr1 275233662 275233872 -6959792 + AluJb SINE Alu 85 301 -11 1569 167 0 15 chr1 275233901 275234170 -6959494 + AluJo SINE Alu 1 265 -47 279 79 0 0 chr1 275234349 275234387 -6959277 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 1142 150 5 47 chr1 275234400 275234613 -6959051 - AluJb SINE Alu -22 290 87 2194 87 0 19 chr1 275234639 275234951 -6958713 - AluY SINE Alu -5 306 1 213 39 0 0 chr1 275234999 275235025 -6958639 + (A)n Simple_repeat Simple_repeat 1 26 0 663 106 11 0 chr1 275235251 275235345 -6958319 + LTR47A LTR ERVL 1 95 -357 993 147 49 64 chr1 275235397 275235520 -6958144 + LTR47A LTR ERVL 252 372 -80 2550 33 0 0 chr1 275235520 275235820 -6957844 - AluY SINE Alu -11 300 1 993 147 49 64 chr1 275235820 275235900 -6957764 + LTR47A LTR ERVL 372 452 0 1898 70 19 4 chr1 275236298 275236556 -6957108 - AluY SINE Alu -49 262 1 2199 109 0 6 chr1 275236590 275236901 -6956763 + AluSg SINE Alu 1 309 -1 515 311 131 29 chr1 275237048 275237392 -6956272 - L2 LINE L2 0 3313 2935 1892 102 0 4 chr1 275238155 275238420 -6955244 - AluSx SINE Alu -7 305 42 3595 165 106 60 chr1 275238651 275238823 -6954841 - MER21B LTR ERV1 -75 788 625 1801 141 41 0 chr1 275238823 275239113 -6954551 - AluSg SINE Alu -8 302 1 3595 165 106 60 chr1 275239113 275239581 -6954083 - MER21B LTR ERV1 -238 625 180 2094 121 0 3 chr1 275239581 275239886 -6953778 + AluSx SINE Alu 2 305 -7 3595 165 106 60 chr1 275239886 275239920 -6953744 - MER21B LTR ERV1 -683 180 149 1966 145 0 3 chr1 275239920 275240230 -6953434 + AluSx SINE Alu 3 311 -1 3595 165 106 60 chr1 275240230 275240306 -6953358 - MER21B LTR ERV1 -714 149 1 356 343 81 35 chr1 275240898 275241096 -6952568 + MIR SINE MIR 23 229 -33 2241 71 6 43 chr1 275241488 275241811 -6951853 - AluSp SINE Alu -2 311 1 865 149 0 0 chr1 275242074 275242215 -6951449 - AluJb SINE Alu -2 310 170 1291 133 0 19 chr1 275242412 275242623 -6951041 - AluSx SINE Alu -105 207 1 802 172 0 0 chr1 275243061 275243189 -6950475 - AluJb SINE Alu -7 305 178 797 71 0 0 chr1 275244406 275244505 -6949159 - AluSg/x SINE Alu -23 289 191 299 255 45 77 chr1 275244728 275244858 -6948806 - MIR SINE MIR -65 143 30 1631 170 13 16 chr1 275245031 275245343 -6948321 + AluJo SINE Alu 1 311 -1 22 70 0 0 chr1 275246047 275246090 -6947574 + AT_rich Low_complexity Low_complexity 1 43 0 259 167 0 21 chr1 275246095 275246143 -6947521 - MLT1I LTR MaLR -2 407 361 1689 181 24 0 chr1 275246144 275246442 -6947222 + AluJo SINE Alu 2 306 -6 803 240 38 76 chr1 275246857 275247125 -6946539 + MIR SINE MIR 6 262 0 1893 130 24 0 chr1 275247750 275248042 -6945622 + AluSx SINE Alu 1 299 -13 2186 108 3 3 chr1 275248739 275249046 -6944618 - AluSq SINE Alu -4 309 3 384 310 39 19 chr1 275249060 275249215 -6944449 - MLT1I LTR MaLR -191 218 61 1349 180 8 19 chr1 275249217 275249473 -6944191 + AluJo SINE Alu 5 257 -55 29 0 0 0 chr1 275249698 275249727 -6943937 + AT_rich Low_complexity Low_complexity 1 29 0 2186 102 0 9 chr1 275249736 275250051 -6943613 + AluSx SINE Alu 1 312 0 325 268 49 12 chr1 275250175 275250257 -6943407 - L2 LINE L2 0 3272 3188 393 197 0 0 chr1 275250289 275250350 -6943314 + MER58A DNA MER1_type 1 61 -163 594 172 17 17 chr1 275250352 275250468 -6943196 + MER58B DNA MER1_type 225 340 -1 283 136 0 23 chr1 275250537 275250581 -6943083 + AluSx SINE Alu 1 43 -257 1829 129 0 7 chr1 275250581 275250868 -6942796 + AluSx SINE Alu 27 311 -1 1988 99 49 3 chr1 275250932 275251216 -6942448 + AluSq SINE Alu 1 297 -16 960 115 0 0 chr1 275251317 275251447 -6942217 - AluSq/x SINE Alu -182 130 1 2104 101 20 0 chr1 275251711 275252009 -6941655 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr1 275252461 275252483 -6941181 + AT_rich Low_complexity Low_complexity 1 22 0 2418 51 3 0 chr1 275252693 275252988 -6940676 - AluY SINE Alu -9 302 7 845 143 6 54 chr1 275253093 275253261 -6940403 - FRAM SINE Alu -6 170 11 1331 93 0 0 chr1 275253390 275253572 -6940092 + AluSp SINE Alu 129 310 -3 1528 106 35 35 chr1 275253574 275253828 -6939836 + L1PA8A LINE L1 5878 6131 0 284 205 107 66 chr1 275254444 275254566 -6939098 + MLT1H LTR MaLR 421 547 -2 407 228 23 49 chr1 275255902 275255971 -6937693 + AluJ/FLAM SINE Alu 11 4294967289 -309 1925 139 3 7 chr1 275255971 275256274 -6937390 + AluSx SINE Alu 1 302 -10 407 228 23 49 chr1 275256274 275256373 -6937291 + AluJ/FLAM SINE Alu -8 92 -210 646 205 53 0 chr1 275256385 275256536 -6937128 - MER115 DNA AcHobo -71 622 464 730 225 110 13 chr1 275256635 275256862 -6936802 - MER115 DNA AcHobo -444 249 1 471 340 20 67 chr1 275257010 275257043 -6936621 + L2 LINE L2 2237 2270 -1044 2075 126 7 0 chr1 275257043 275257352 -6936312 - AluSx SINE Alu 0 312 2 471 340 20 67 chr1 275257352 275257659 -6936005 + L2 LINE L2 2270 2561 -753 2217 55 10 7 chr1 275257807 275258099 -6935565 - AluY SINE Alu -18 293 1 840 140 0 21 chr1 275258328 275258471 -6935193 - FLAM_C SINE Alu -1 142 3 1910 126 14 0 chr1 275259450 275259727 -6933937 - AluSx SINE Alu -31 281 1 728 111 0 0 chr1 275259763 275259862 -6933802 + AluY SINE Alu 2 100 -218 2032 75 48 3 chr1 275260423 275260715 -6932949 - AluY SINE Alu -6 305 1 183 286 0 0 chr1 275260811 275260853 -6932811 - L2 LINE L2 -1049 2265 2224 211 344 11 21 chr1 275260859 275260952 -6932712 + MIR SINE MIR 170 261 -1 1610 146 0 12 chr1 275261274 275261528 -6932136 + AluSx SINE Alu 1 251 -61 1904 105 57 27 chr1 275261776 275262072 -6931592 + AluSx SINE Alu 1 305 -7 580 0 40 0 chr1 275262533 275262608 -6931056 + (TTTTA)n Simple_repeat Simple_repeat 2 79 0 1933 122 6 16 chr1 275262651 275262963 -6930701 - AluSg1 SINE Alu 0 309 1 1343 117 10 0 chr1 275262963 275263160 -6930504 - AluSg/x SINE Alu -7 303 105 1526 107 30 17 chr1 275263436 275263670 -6929994 - AluSx SINE Alu -12 300 64 445 150 60 0 chr1 275263673 275263760 -6929904 - MSTB LTR MaLR -346 80 1 1940 165 77 34 chr1 275263765 275263889 -6929775 + MER90 LTR ERV1 179 296 -318 2506 51 0 13 chr1 275263889 275264204 -6929460 - AluY SINE Alu 0 311 1 2200 105 0 3 chr1 275264205 275264511 -6929153 - AluSq SINE Alu -8 305 1 1940 165 77 34 chr1 275264511 275264802 -6928862 + MER90 LTR ERV1 295 614 0 1755 155 10 3 chr1 275264809 275265105 -6928559 - AluJo SINE Alu -14 298 1 2145 92 0 0 chr1 275265477 275265785 -6927879 + AluSx SINE Alu 1 308 0 216 237 0 0 chr1 275266666 275266704 -6926960 + polypyrimidine Low_complexity Low_complexity 2 39 0 2065 129 3 6 chr1 275266704 275267015 -6926649 - AluSx SINE Alu -2 310 1 1082 228 14 0 chr1 275267085 275267304 -6926360 - MER58A DNA MER1_type 0 224 3 1974 85 0 7 chr1 275267783 275268055 -6925609 + AluSg SINE Alu 39 308 -2 1066 202 18 72 chr1 275268354 275268492 -6925172 + MLT1G LTR MaLR 263 380 -210 2274 78 10 0 chr1 275268492 275268788 -6924876 - AluY SINE Alu -8 303 5 1066 202 18 72 chr1 275268788 275268926 -6924738 + MLT1G LTR MaLR 380 524 -66 1798 149 0 17 chr1 275269315 275269629 -6924035 + AluSx SINE Alu 1 309 0 508 284 210 20 chr1 275269725 275270120 -6923544 + L2 LINE L2 2844 3313 0 1706 160 17 3 chr1 275270262 275270550 -6923114 - AluJo SINE Alu -20 292 1 270 244 35 35 chr1 275270753 275270839 -6922825 + MIR SINE MIR 76 161 -101 1826 142 3 10 chr1 275271042 275271338 -6922326 + AluJb SINE Alu 7 300 -12 2073 124 3 3 chr1 275272170 275272476 -6921188 - AluSx SINE Alu -6 306 1 1963 311 36 34 chr1 275272633 275272940 -6920724 - MERVL LTR ERVL -1903 3093 2788 2309 100 3 0 chr1 275272940 275273249 -6920415 + AluSx SINE Alu 1 310 -2 1963 311 36 34 chr1 275273249 275273787 -6919877 - MERVL LTR ERVL -2208 2788 2415 2228 114 0 3 chr1 275273856 275274153 -6919511 - AluSx SINE Alu -16 296 1 752 328 102 15 chr1 275274385 275274797 -6918867 - MERVL LTR ERVL -4189 807 360 314 287 43 9 chr1 275274787 275274902 -6918762 - MERVL LTR ERVL -2658 2827 2709 * 2282 125 0 0 chr1 275274929 275275233 -6918431 + AluSx SINE Alu 1 304 -8 246 257 81 14 chr1 275275616 275275690 -6917974 - MIR SINE MIR -73 135 57 2432 97 0 0 chr1 275275764 275276074 -6917590 - AluSx SINE Alu -2 310 1 1165 171 43 0 chr1 275276952 275277163 -6916501 - AluJo SINE Alu -92 220 1 533 173 9 14 chr1 275277174 275277285 -6916379 - MLT1D LTR MaLR -417 88 1 2472 85 0 13 chr1 275277487 275277803 -6915861 - AluSp SINE Alu -1 312 1 3911 100 14 19 chr1 275277806 275278189 -6915475 - L1PA14 LINE L1 0 6161 5781 2340 105 3 3 chr1 275278189 275278495 -6915169 - AluSp SINE Alu -7 306 1 3911 100 14 19 chr1 275278495 275278690 -6914974 - L1PA14 LINE L1 -380 5781 5586 721 73 10 0 chr1 275278690 275278786 -6914878 - U6 snRNA snRNA -10 97 1 1823 163 10 29 chr1 275278795 275279101 -6914563 - AluJo SINE Alu -12 300 1 21 36 0 0 chr1 275279101 275279129 -6914535 + AT_rich Low_complexity Low_complexity 1 28 0 388 288 50 86 chr1 275279262 275279356 -6914308 + MIR SINE MIR 30 126 -136 2278 114 0 3 chr1 275279356 275279662 -6914002 - AluY SINE Alu -6 305 1 388 288 50 86 chr1 275279662 275279789 -6913875 + MIR SINE MIR 126 243 -19 2148 89 4 11 chr1 275279830 275280110 -6913554 - AluSp SINE Alu -11 302 25 2281 103 3 3 chr1 275280940 275281242 -6912422 + AluSg SINE Alu 5 306 -4 1310 171 122 8 chr1 275281438 275281701 -6911963 - AluJo SINE Alu -19 293 1 348 306 101 0 chr1 275281763 275281982 -6911682 - L1ME LINE L1 -340 5781 5541 885 157 0 0 chr1 275282200 275282334 -6911330 - AluJb SINE Alu -178 134 1 299 366 38 27 chr1 275282335 275282521 -6911143 - MIR SINE MIR -65 197 10 276 193 0 18 chr1 275282723 275282780 -6910884 + FLAM SINE Alu 76 131 -2 1085 122 7 0 chr1 275282786 275282934 -6910730 + AluSq SINE Alu 6 154 -159 1934 148 3 0 chr1 275282935 275283226 -6910438 + AluSx SINE Alu 21 312 0 184 349 55 20 chr1 275283233 275283379 -6910285 + MIR SINE MIR 106 256 -6 225 285 84 104 chr1 275283441 275283656 -6910008 + L2 LINE L2 1774 1992 -1322 876 102 8 24 chr1 275283656 275283783 -6909881 - FLAM_C SINE Alu -8 125 1 1876 181 0 13 chr1 275283785 275284100 -6909564 - AluJo SINE Alu -1 311 1 225 285 84 104 chr1 275284100 275284228 -6909436 + L2 LINE L2 1993 2113 -1201 2211 105 3 43 chr1 275284306 275284631 -6909033 + AluSx SINE Alu 1 312 0 2340 108 0 0 chr1 275285429 275285724 -6907940 + AluSx SINE Alu 1 295 -17 2179 102 38 0 chr1 275286433 275286726 -6906938 + AluSc SINE Alu 1 304 -5 1471 107 5 5 chr1 275286793 275286990 -6906674 - AluSx SINE Alu -115 197 1 1126 158 0 11 chr1 275287114 275287298 -6906366 + AluJo SINE Alu 88 269 -43 2393 86 17 0 chr1 275287809 275288110 -6905554 - AluSq SINE Alu -5 308 3 212 77 26 0 chr1 275289533 275289572 -6904092 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2403 57 0 3 chr1 275289579 275289861 -6903803 - AluY SINE Alu -30 281 1 541 160 53 46 chr1 275289919 275290050 -6903614 - FLAM_C SINE Alu 0 133 2 2055 125 12 41 chr1 275290056 275290376 -6903288 - AluSx SINE Alu -1 311 1 2156 114 3 3 chr1 275290435 275290733 -6902931 + AluSx SINE Alu 1 298 -14 1034 173 56 33 chr1 275290817 275291031 -6902633 - MER20 DNA MER1_type 0 219 1 423 200 223 31 chr1 275291055 275291185 -6902479 + MER5A DNA MER1_type 14 168 -21 199 36 0 36 chr1 275291219 275291247 -6902417 + MER5B DNA MER1_type 21 47 -131 264 300 77 8 chr1 275291437 275291567 -6902097 + MIR SINE MIR 1 139 -123 2131 112 7 0 chr1 275291918 275292205 -6901459 - AluSx SINE Alu -23 289 1 1233 145 102 132 chr1 275292466 275292611 -6901053 + AluSx SINE Alu 3 136 -166 2353 93 3 0 chr1 275292611 275292902 -6900762 + AluSp SINE Alu 1 292 -21 1233 145 102 132 chr1 275292902 275293059 -6900605 + AluSx SINE Alu 136 296 -6 22 0 0 0 chr1 275293059 275293081 -6900583 + AT_rich Low_complexity Low_complexity 1 22 0 2229 119 0 0 chr1 275293578 275293872 -6899792 + AluSx SINE Alu 1 294 -18 781 153 0 8 chr1 275293875 275293993 -6899671 - AluJo/FLAM SINE Alu -185 117 1 200 341 24 0 chr1 275294010 275294092 -6899572 - MIR SINE MIR -105 157 74 397 136 36 118 chr1 275294125 275294235 -6899429 + MER53 DNA DNA 89 189 0 2068 141 3 7 chr1 275294321 275294652 -6899012 + AluSx SINE Alu 2 312 0 2259 129 0 0 chr1 275294724 275295033 -6898631 + AluSx SINE Alu 1 309 -3 298 264 27 27 chr1 275295402 275295512 -6898152 + L1MC4 LINE L1 7933 8042 0 249 262 28 75 chr1 275295547 275295600 -6898064 + L2 LINE L2 3202 3249 -64 4362 73 5 2 chr1 275295600 275296151 -6897513 - MER41A LTR ERV1 0 554 2 249 262 28 75 chr1 275296151 275296204 -6897460 + L2 LINE L2 3249 3303 -10 301 324 102 23 chr1 275296346 275296562 -6897102 - L2 LINE L2 -1 3312 3080 245 268 0 14 chr1 275296670 275296741 -6896923 - L1MA9 LINE L1 -38 6274 6205 1763 129 47 149 chr1 275296742 275296997 -6896667 - L1MA9 LINE L1 -176 6136 5965 2170 108 17 0 chr1 275296997 275297285 -6896379 - AluSc SINE Alu -16 293 1 1763 129 47 149 chr1 275297285 275297578 -6896086 - L1MA9 LINE L1 -347 5965 5644 2294 117 0 0 chr1 275297580 275297880 -6895784 - AluSq SINE Alu -7 306 7 2178 129 0 0 chr1 275297895 275298189 -6895475 - AluSg SINE Alu -16 294 1 361 318 30 23 chr1 275298189 275298315 -6895349 - MIR SINE MIR -100 162 36 792 271 75 87 chr1 275298336 275298667 -6894997 + MER34 LTR ERV1 1 325 -217 1588 175 3 80 chr1 275298667 275298881 -6894783 - AluJo SINE Alu -9 303 121 2148 101 14 7 chr1 275298881 275299167 -6894497 + AluSg SINE Alu 1 288 -22 1588 175 3 80 chr1 275299167 275299278 -6894386 - AluJo SINE Alu -191 121 3 792 271 75 87 chr1 275299278 275299489 -6894175 + MER34 LTR ERV1 325 537 -5 1142 156 0 0 chr1 275299657 275299836 -6893828 - AluSg/x SINE Alu -13 299 121 2219 87 4 0 chr1 275299869 275300146 -6893518 + AluSp SINE Alu 1 278 -35 2027 143 7 3 chr1 275300621 275300928 -6892736 + AluSx SINE Alu 1 308 -4 237 218 18 36 chr1 275300935 275300990 -6892674 + MER5A DNA MER1_type 24 77 -112 1616 171 18 24 chr1 275301071 275301399 -6892265 - MER1B DNA MER1_type -8 331 6 238 211 66 66 chr1 275301405 275301481 -6892183 + MER5A DNA MER1_type 86 161 -28 224 235 0 20 chr1 275301511 275301562 -6892102 + MER5A DNA MER1_type 140 189 0 1243 230 83 0 chr1 275301570 275301883 -6891781 + MER58B DNA MER1_type 3 341 0 803 154 0 31 chr1 275302304 275302434 -6891230 - FLAM_C SINE Alu -7 126 1 792 196 0 0 chr1 275302694 275302827 -6890837 + FLAM_C SINE Alu 1 133 0 2219 125 0 0 chr1 275302863 275303167 -6890497 - AluSx SINE Alu -8 304 1 2285 114 3 3 chr1 275303309 275303617 -6890047 + AluSq SINE Alu 1 308 -5 2104 137 0 25 chr1 275303640 275303955 -6889709 + AluSx SINE Alu 1 307 -5 2066 95 7 34 chr1 275304091 275304387 -6889277 + AluSg1 SINE Alu 1 288 -21 432 253 0 0 chr1 275304687 275304766 -6888898 - FRAM/FAM SINE Alu -102 74 1 1767 147 8 4 chr1 275304781 275305039 -6888625 - AluSq SINE Alu -13 300 42 1103 196 0 40 chr1 275305040 275305265 -6888399 - AluJo SINE Alu -96 216 1 2266 121 0 0 chr1 275305414 275305719 -6887945 + AluSg SINE Alu 1 305 -5 194 302 188 7 chr1 275305794 275305943 -6887721 - L2 LINE L2 -456 2858 2683 1117 152 0 11 chr1 275305945 275306123 -6887541 - AluJ SINE Alu -8 304 129 2344 91 7 7 chr1 275306138 275306436 -6887228 + AluSx SINE Alu 1 298 -14 1251 116 0 0 chr1 275306436 275306600 -6887064 + AluSq SINE Alu 134 297 -16 609 130 10 10 chr1 275306617 275306717 -6886947 - AluJ SINE Alu -186 126 27 2323 106 0 25 chr1 275307270 275307590 -6886074 + AluSx SINE Alu 1 312 0 2187 93 0 7 chr1 275307590 275307868 -6885796 + AluSx SINE Alu 1 276 -36 245 210 143 59 chr1 275309200 275309319 -6884345 + L2 LINE L2 2622 2750 -564 182 341 23 11 chr1 275309399 275309487 -6884177 + L2 LINE L2 2651 2739 -575 1400 188 48 0 chr1 275309533 275309805 -6883859 + AluJo SINE Alu 1 285 -27 528 16 0 0 chr1 275309835 275309896 -6883768 + (CA)n Simple_repeat Simple_repeat 2 62 0 2302 115 0 0 chr1 275309920 275310216 -6883448 + AluSx SINE Alu 1 296 -16 297 291 95 34 chr1 275310259 275310438 -6883226 + L2 LINE L2 2826 3015 -257 1844 155 10 7 chr1 275310708 275311004 -6882660 - AluSx SINE Alu -15 297 1 2032 143 10 3 chr1 275311029 275311336 -6882328 - AluSx SINE Alu -3 309 1 290 79 0 0 chr1 275311817 275311855 -6881809 - 5S rRNA rRNA -83 38 1 2127 102 14 0 chr1 275311887 275312170 -6881494 - AluSq SINE Alu -17 296 10 2045 118 66 0 chr1 275312439 275312727 -6880937 + AluSx SINE Alu 1 307 -5 217 141 172 16 chr1 275312731 275312795 -6880869 + MER5C DNA MER1_type 111 184 -140 650 204 68 23 chr1 275312800 275312976 -6880688 - MER58B DNA MER1_type -3 338 155 948 152 34 17 chr1 275312976 275313154 -6880510 - AluJo SINE Alu -12 300 120 274 276 95 0 chr1 275313154 275313270 -6880394 - MER58B DNA MER1_type -202 139 13 233 286 0 0 chr1 275313421 275313477 -6880187 + L2 LINE L2 3013 3068 -245 386 248 124 40 chr1 275313479 275313583 -6880081 + L1MC5 LINE L1 7612 7706 -255 804 178 0 0 chr1 275313583 275313701 -6879963 - AluJo SINE Alu -184 118 1 386 248 124 40 chr1 275313701 275313870 -6879794 + L1MC5 LINE L1 7706 7908 -53 982 133 90 37 chr1 275313871 275314091 -6879573 + AluJo SINE Alu 114 343 0 1392 157 164 4 chr1 275314134 275314396 -6879268 - AluSx SINE Alu -8 304 1 1542 118 0 5 chr1 275314553 275314792 -6878872 + AluSg/x SINE Alu 81 310 0 2157 123 7 0 chr1 275314970 275315272 -6878392 + AluSx SINE Alu 1 304 -8 240 162 0 0 chr1 275315286 275315323 -6878341 - LTR24C LTR ERV1 -81 554 518 2084 123 0 16 chr1 275315349 275315486 -6878178 + AluSq SINE Alu 1 139 -174 2245 132 0 0 chr1 275315486 275315789 -6877875 + AluSg SINE Alu 1 303 -7 2084 123 0 16 chr1 275315789 275315961 -6877703 + AluSq SINE Alu 139 305 -8 947 195 12 0 chr1 275316235 275316404 -6877260 + AluSg/x SINE Alu 132 302 -8 31 0 0 0 chr1 275316493 275316524 -6877140 + AT_rich Low_complexity Low_complexity 1 31 0 715 198 0 0 chr1 275316524 275316640 -6877024 - FLAM_C SINE Alu -15 118 3 2168 103 17 7 chr1 275316799 275317119 -6876545 - AluSq SINE Alu 0 313 1 755 119 0 126 chr1 275317125 275317276 -6876388 - FLAM_C SINE Alu -1 132 1 471 261 138 37 chr1 275317276 275317584 -6876080 + L1MC/D LINE L1 5152 5488 -743 226 182 182 15 chr1 275317652 275317718 -6875946 + MLT1C LTR MaLR 4 80 -387 1870 151 3 43 chr1 275317740 275318065 -6875599 - AluJb SINE Alu 0 312 1 27 29 0 0 chr1 275318065 275318099 -6875565 + AT_rich Low_complexity Low_complexity 1 34 0 1229 232 51 32 chr1 275318131 275318501 -6875163 + MLT1C LTR MaLR 91 467 0 213 346 123 17 chr1 275318635 275318814 -6874850 - L2 LINE L2 -447 2867 2670 2333 110 0 0 chr1 275318817 275319118 -6874546 - AluSx SINE Alu -11 301 1 430 305 181 45 chr1 275319140 275319854 -6873810 - L2 LINE L2 -900 2414 1604 494 146 11 11 chr1 275320104 275320193 -6873471 - MLT1A2 LTR MaLR 0 374 286 2176 133 3 3 chr1 275320195 275320495 -6873169 + AluSx SINE Alu 1 300 -12 745 158 16 0 chr1 275320700 275320827 -6872837 - MLT1A2 LTR MaLR -242 132 4 751 158 0 50 chr1 275321396 275321535 -6872129 + FLAM_C SINE Alu 1 132 -1 2005 136 0 7 chr1 275321645 275321957 -6871707 + AluSq SINE Alu 1 310 0 297 312 74 32 chr1 275322173 275322362 -6871302 - MIR SINE MIR -56 206 10 302 139 0 139 chr1 275322574 275322625 -6871039 + FAM SINE Alu 106 142 -173 1945 155 20 0 chr1 275322625 275322928 -6870736 - AluSx SINE Alu 0 312 4 302 139 0 139 chr1 275322928 275322962 -6870702 + FAM SINE Alu 142 179 0 418 282 202 1 chr1 275323779 275323979 -6869685 + MIR SINE MIR 9 245 -17 589 190 138 0 chr1 275323998 275324114 -6869550 - FLAM_C SINE Alu -1 132 1 28 0 0 0 chr1 275324160 275324188 -6869476 + AT_rich Low_complexity Low_complexity 1 28 0 2180 90 0 4 chr1 275324254 275324531 -6869133 + AluSg SINE Alu 21 296 -14 408 252 130 8 chr1 275325639 275325690 -6867974 - MER5A DNA MER1_type -6 183 140 2051 111 0 66 chr1 275325690 275326023 -6867641 - AluSx SINE Alu -1 311 1 408 252 130 8 chr1 275326023 275326094 -6867570 - MER5A DNA MER1_type -49 140 46 2760 188 13 72 chr1 275326214 275326695 -6866969 - L1MC1 LINE L1 -5 6328 5820 1992 131 3 35 chr1 275326695 275327007 -6866657 + AluSx SINE Alu 1 302 -10 2760 188 13 72 chr1 275327007 275327626 -6866038 - L1MC1 LINE L1 -513 5820 5166 1732 130 65 14 chr1 275327626 275327903 -6865761 - AluSx SINE Alu -21 291 1 2760 188 13 72 chr1 275327903 275328131 -6865533 - L1MC1 LINE L1 -1167 5166 5124 2346 99 0 0 chr1 275328131 275328434 -6865230 + AluSg SINE Alu 1 303 -7 2760 188 13 72 chr1 275328434 275328786 -6864878 - L1MC1 LINE L1 -1209 5124 4753 1945 128 7 3 chr1 275328820 275329128 -6864536 - AluSg SINE Alu 0 309 1 360 241 0 0 chr1 275329132 275329215 -6864449 - MER5C DNA MER1_type -200 124 42 405 241 73 44 chr1 275329216 275329353 -6864311 - MLT1B LTR MaLR -248 142 2 3376 252 100 7 chr1 275329471 275330696 -6862968 + L1 LINE L1 2914 4251 -1895 1715 214 92 27 chr1 275330698 275331052 -6862612 + MSTA LTR MaLR 1 386 -42 2435 57 0 0 chr1 275331052 275331369 -6862295 + AluY SINE Alu 1 317 0 1715 214 92 27 chr1 275331369 275331415 -6862249 + MSTA LTR MaLR 386 428 0 8052 205 33 5 chr1 275331415 275332978 -6860686 + MSTA-int LTR MaLR 1 1607 -44 32237 24 2 0 chr1 275332993 275337540 -6856124 - L1PA2 LINE L1 0 6155 1603 35819 36 31 2 chr1 275337640 275341976 -6851688 - L1P LINE L1 -1679 4467 4 322 190 0 0 chr1 275341982 275342040 -6851624 + MSTA-int LTR MaLR 1594 1651 0 2148 183 56 15 chr1 275342040 275342451 -6851213 + MSTA LTR MaLR 1 428 0 4487 201 24 14 chr1 275342451 275343452 -6850212 + L1 LINE L1 4249 5259 -887 259 163 0 0 chr1 275343458 275343501 -6850163 + MSTA LTR MaLR 1 43 -385 8912 302 37 21 chr1 275343506 275345073 -6848591 + PRIMA41-int LTR ERV1 2945 4485 -3271 2693 113 3 27 chr1 275345073 275345282 -6848382 - THE1B LTR MaLR 0 364 165 2007 122 0 0 chr1 275345282 275345577 -6848087 + AluSx SINE Alu 23 317 0 2693 113 3 27 chr1 275345577 275345739 -6847925 - THE1B LTR MaLR -199 165 1 8912 302 37 21 chr1 275345739 275347339 -6846325 + PRIMA41-int LTR ERV1 4485 6163 -1593 305 238 65 122 chr1 275347494 275347708 -6845956 - L1M2 LINE L1 -5775 1074 873 207 114 0 0 chr1 275347710 275347745 -6845919 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 6745 56 70 0 chr1 275348437 275349454 -6844210 - L1PA7 LINE L1 0 6154 5097 199 341 118 12 chr1 275353064 275353234 -6840430 + MIR SINE MIR 51 238 -24 2418 82 0 0 chr1 275354172 275354475 -6839189 - AluY SINE Alu -8 303 1 821 168 52 0 chr1 275355085 275355240 -6838424 - L1MB3 LINE L1 -1 6182 6020 239 84 72 12 chr1 275355387 275355470 -6838194 + (TA)n Simple_repeat Simple_repeat 2 89 0 33 43 0 0 chr1 275355490 275355537 -6838127 + AT_rich Low_complexity Low_complexity 1 47 0 320 250 115 0 chr1 275355559 275355663 -6838001 + L1M LINE L1 5266 5381 -2427 6696 233 65 26 chr1 275355669 275357534 -6836130 - L1MB3 LINE L1 -1 6182 4147 2056 141 20 0 chr1 275357534 275357838 -6835826 - AluSg SINE Alu 0 310 1 6696 233 65 26 chr1 275357838 275359136 -6834528 - L1MB3 LINE L1 -2036 4147 2900 303 289 47 39 chr1 275360249 275360377 -6833287 - MIR SINE MIR -123 139 11 2684 110 25 0 chr1 275360744 275361109 -6832555 - Charlie3 DNA MER1_type -4 2706 2333 692 321 41 21 chr1 275361459 275361510 -6832154 + MLT1F1 LTR MaLR 1 49 -518 6279 151 98 30 chr1 275361510 275362421 -6831243 + HSMAR2 DNA Mariner 2 1018 -284 2163 95 14 10 chr1 275362421 275362715 -6830949 + AluY SINE Alu 1 295 -16 6279 151 98 30 chr1 275362715 275363020 -6830644 + HSMAR2 DNA Mariner 1018 1301 -1 692 321 41 21 chr1 275363020 275363211 -6830453 + MLT1F1 LTR MaLR 49 248 -319 707 200 0 0 chr1 275363211 275363321 -6830343 - FAM SINE Alu -75 110 1 808 160 0 0 chr1 275364020 275364139 -6829525 + FRAM SINE Alu 37 155 -21 396 257 43 3 chr1 275364306 275364427 -6829237 - MIR SINE MIR -61 147 30 2297 72 0 0 chr1 275364454 275364764 -6828900 - AluY SINE Alu 0 318 9 22 0 0 0 chr1 275364771 275364793 -6828871 + AT_rich Low_complexity Low_complexity 1 22 0 1156 90 20 13 chr1 275365588 275365776 -6827888 - L1P2 LINE L1 -591 5564 5375 863 185 12 6 chr1 275365907 275366069 -6827595 - FAM SINE Alu -15 170 8 251 320 0 0 chr1 275366968 275367043 -6826621 - L2 LINE L2 0 3313 3239 186 43 0 0 chr1 275367567 275367590 -6826074 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1351 107 0 11 chr1 275367805 275367982 -6825682 + AluSq SINE Alu 1 175 -138 2494 100 14 12 chr1 275367982 275368507 -6825157 - L1P4 LINE L1 -671 5497 4976 1725 145 0 33 chr1 275368644 275368920 -6824744 - AluJo SINE Alu -45 267 1 2166 115 0 20 chr1 275369182 275369486 -6824178 - AluSg SINE Alu -12 298 1 341 368 48 0 chr1 275369726 275369851 -6823813 + L2 LINE L2 3142 3272 0 2180 121 0 9 chr1 275369864 275370179 -6823485 - AluSx SINE Alu 0 312 1 922 223 34 10 chr1 275370304 275370510 -6823154 - MER97a DNA MER1_type? -678 216 6 215 320 112 48 chr1 275370776 275370901 -6822763 + L2 LINE L2 3133 3265 -7 1218 267 55 33 chr1 275371605 275371972 -6821692 + MLT1I LTR MaLR 3 377 -32 1302 204 47 77 chr1 275371979 275372380 -6821284 - MLT2C1 LTR ERVL -8 389 1 2388 94 0 0 chr1 275373898 275374196 -6819468 - AluSx SINE Alu -14 298 1 1184 164 9 40 chr1 275374200 275374426 -6819238 - AluJo SINE Alu -7 305 87 955 144 52 0 chr1 275374425 275374578 -6819086 - FRAM SINE Alu -16 160 1 * 37 39 0 0 chr1 275374693 275374744 -6818920 + AT_rich Low_complexity Low_complexity 1 51 0 2285 123 0 0 chr1 275375044 275375352 -6818312 + AluSx SINE Alu 1 308 -4 260 250 35 2 chr1 275375447 275375559 -6818105 + L1M4 LINE L1 5228 5342 -808 731 102 110 0 chr1 275375562 275375680 -6817984 - AluSg/x SINE Alu -3 307 177 370 303 28 14 chr1 275375792 275375823 -6817841 - MER5B DNA MER1_type -31 147 118 2057 129 10 0 chr1 275375823 275376118 -6817546 + AluSx SINE Alu 1 298 -14 370 303 28 14 chr1 275376118 275376228 -6817436 - MER5B DNA MER1_type -60 118 4 195 42 0 0 chr1 275376282 275376306 -6817358 + (A)n Simple_repeat Simple_repeat 1 24 0 1720 189 17 0 chr1 275376460 275376756 -6816908 + AluJo SINE Alu 1 301 -11 253 164 27 27 chr1 275376815 275376888 -6816776 + (TA)n Simple_repeat Simple_repeat 1 73 0 235 341 11 0 chr1 275376932 275377023 -6816641 - MIR SINE MIR -74 188 97 371 310 122 36 chr1 275377566 275377869 -6815795 + L1MEd LINE L1 550 878 -5241 714 202 0 0 chr1 275377916 275378040 -6815624 - FLAM_C SINE Alu -19 124 1 526 297 83 51 chr1 275378041 275378616 -6815048 + L1MEd LINE L1 904 1537 -4773 2129 116 0 35 chr1 275378616 275378935 -6814729 + AluSx SINE Alu 1 308 -4 526 297 83 51 chr1 275378935 275379036 -6814628 + L1MEd LINE L1 1537 1633 -4677 216 135 0 0 chr1 275379100 275379137 -6814527 + (A)n Simple_repeat Simple_repeat 1 37 0 2040 88 30 0 chr1 275379137 275379433 -6814231 + AluSp SINE Alu 17 320 0 46 54 0 0 chr1 275379505 275379579 -6814085 + AT_rich Low_complexity Low_complexity 1 74 0 2004 149 0 10 chr1 275379778 275380079 -6813585 + AluJb SINE Alu 1 298 -14 24 0 0 0 chr1 275380150 275380174 -6813490 + AT_rich Low_complexity Low_complexity 1 24 0 1703 186 7 0 chr1 275380193 275380484 -6813180 + AluJb SINE Alu 2 294 -18 332 218 38 75 chr1 275380486 275380619 -6813045 + L1MEd LINE L1 2267 2394 -3735 1213 179 18 14 chr1 275380755 275380978 -6812686 - MER90 LTR ERV1 -23 552 329 2217 113 0 0 chr1 275380978 275381269 -6812395 - AluSg1 SINE Alu -13 296 6 1935 125 7 4 chr1 275381273 275381553 -6812111 - AluSx SINE Alu -8 304 24 2255 92 3 0 chr1 275381668 275381977 -6811687 + AluSp SINE Alu 2 311 0 1238 247 40 3 chr1 275381977 275382281 -6811383 - MER90 LTR ERV1 -260 315 1 2044 139 3 7 chr1 275383625 275383928 -6809736 + AluSx SINE Alu 1 302 -10 402 207 12 12 chr1 275383945 275384027 -6809637 + AluJ/FLAM SINE Alu 11 92 -210 653 205 53 0 chr1 275384039 275384190 -6809474 - MER115 DNA AcHobo -71 622 464 702 225 110 13 chr1 275384289 275384516 -6809148 - MER115 DNA AcHobo -444 249 1 357 318 20 78 chr1 275384664 275384697 -6808967 + L2 LINE L2 2237 2270 -1044 2255 117 3 7 chr1 275384697 275385005 -6808659 - AluSx SINE Alu -4 308 2 357 318 20 78 chr1 275385005 275385267 -6808397 + L2 LINE L2 2270 2515 -799 2389 75 3 0 chr1 275385460 275385752 -6807912 - AluY SINE Alu -18 293 1 631 195 0 0 chr1 275386385 275386503 -6807161 - FLAM_C SINE Alu -15 118 1 2238 125 0 0 chr1 275386512 275386824 -6806840 - AluSx SINE Alu 0 312 1 399 347 0 20 chr1 275386952 275387203 -6806461 - L1MC/D LINE L1 -2211 5597 5352 2212 115 0 0 chr1 275387307 275387602 -6806062 - AluSx SINE Alu -17 295 1 1790 173 0 13 chr1 275387608 275387914 -6805750 - AluJo SINE Alu -10 302 1 406 225 7 72 chr1 275388037 275388110 -6805554 - MIR SINE MIR -24 238 177 1925 154 46 14 chr1 275388110 275388460 -6805204 - MLT1A1 LTR MaLR -2 363 3 406 225 7 72 chr1 275388460 275388524 -6805140 - MIR SINE MIR -85 177 110 2380 61 27 3 chr1 275388532 275388827 -6804837 - AluY SINE Alu -9 302 1 507 239 27 106 chr1 275389039 275389110 -6804554 - MER45A DNA AcHobo -1408 173 98 2122 118 0 3 chr1 275389110 275389399 -6804265 + AluSx SINE Alu 3 290 -22 2341 82 7 0 chr1 275389407 275389699 -6803965 + AluSq SINE Alu 1 294 -19 507 239 27 106 chr1 275389699 275389806 -6803858 - MER45A DNA AcHobo -1490 91 1 303 183 140 21 chr1 275389836 275389929 -6803735 - MIR SINE MIR -122 140 37 2055 105 0 59 chr1 275390291 275390597 -6803067 + AluSg SINE Alu 23 310 0 246 197 106 0 chr1 275391383 275391449 -6802215 + L1P LINE L1 4943 5015 -1131 521 290 99 26 chr1 275391749 275392042 -6801622 + L1ME LINE L1 5344 5660 -461 1974 140 7 0 chr1 275392063 275392363 -6801301 + AluJb SINE Alu 1 302 0 2719 146 7 18 chr1 275392490 275392928 -6800736 - Tigger2a DNA MER2_type -1 433 1 290 250 142 25 chr1 275392928 275393048 -6800616 - MIR SINE MIR -105 157 24 235 244 113 81 chr1 275393065 275393185 -6800479 + L1ME LINE L1 5702 5731 -435 2351 107 3 0 chr1 275393185 275393495 -6800169 + AluSp SINE Alu 1 311 -2 235 244 113 81 chr1 275393495 275393595 -6800069 + L1ME LINE L1 5731 5826 -340 23 54 0 0 chr1 275393637 275393674 -6799990 + AT_rich Low_complexity Low_complexity 1 37 0 2182 119 0 0 chr1 275394085 275394379 -6799285 - AluSx SINE Alu -18 294 1 2243 130 0 0 chr1 275394674 275394982 -6798682 + AluSx SINE Alu 1 308 -4 1227 102 6 0 chr1 275395176 275395343 -6798321 - AluSq SINE Alu -13 300 133 2472 87 3 0 chr1 275395553 275395863 -6797801 - AluSp SINE Alu -2 311 1 344 100 50 25 chr1 275396117 275396197 -6797467 + CT-rich Low_complexity Low_complexity 4 85 0 2223 119 0 0 chr1 275396203 275396506 -6797158 - AluSc SINE Alu -6 303 1 800 162 0 22 chr1 275396655 275396791 -6796873 + AluJo/FLAM SINE Alu 1 133 -179 1283 197 123 25 chr1 275396794 275396881 -6796783 + AluJb SINE Alu 1 78 -234 1735 147 8 4 chr1 275396881 275397139 -6796525 + AluSq SINE Alu 42 300 -13 1283 197 123 25 chr1 275397139 275397335 -6796329 + AluJb SINE Alu 78 312 0 2330 111 0 0 chr1 275397910 275398208 -6795456 + AluSx SINE Alu 1 298 -14 2372 88 3 3 chr1 275399164 275399471 -6794193 + AluSg SINE Alu 1 307 -3 336 269 59 8 chr1 275400058 275400177 -6793487 - L2 LINE L2 -2 3270 3146 26 50 0 0 chr1 275400181 275400221 -6793443 + AT_rich Low_complexity Low_complexity 1 40 0 2202 121 0 7 chr1 275400278 275400583 -6793081 + AluSx SINE Alu 1 303 -9 2140 104 13 23 chr1 275401350 275401659 -6792005 - AluSg SINE Alu -4 306 1 2156 123 3 0 chr1 275401660 275401953 -6791711 - AluSg1 SINE Alu -15 294 1 2540 149 14 30 chr1 275401985 275402375 -6791289 + MSTA LTR MaLR 1 385 -43 2467 83 0 0 chr1 275402375 275402676 -6790988 - AluSx SINE Alu -11 301 1 2540 149 14 30 chr1 275402676 275402720 -6790944 + MSTA LTR MaLR 385 428 0 706 289 81 14 chr1 275402753 275403099 -6790565 - L1MC4a LINE L1 -1916 5892 5524 2183 98 19 13 chr1 275403613 275403920 -6789744 + AluY SINE Alu 1 309 -2 1084 146 24 0 chr1 275404140 275404305 -6789359 - AluSq SINE Alu -11 302 134 2199 126 3 3 chr1 275404305 275404615 -6789049 - AluSx SINE Alu -2 310 1 1489 151 23 0 chr1 275404638 275404896 -6788768 - L1MC1 LINE L1 -1 6332 6069 456 188 39 26 chr1 275404900 275405054 -6788610 - L1ME4a LINE L1 -215 5906 5751 1917 113 3 14 chr1 275405062 275405345 -6788319 - AluSx SINE Alu -1 311 32 271 123 246 0 chr1 275405345 275405402 -6788262 - AluS SINE Alu -231 71 1 883 196 82 10 chr1 275405440 275405634 -6788030 + MER6B DNA MER2_type 3 210 0 762 300 46 60 chr1 275406382 275407042 -6786622 + L1MEd LINE L1 555 1207 -4912 2251 89 3 0 chr1 275407042 275407379 -6786285 - AluSp SINE Alu 0 338 1 762 300 46 60 chr1 275407379 275407430 -6786234 + L1MEd LINE L1 1207 1257 -4862 510 191 22 11 chr1 275407506 275407684 -6785980 + GA-rich Low_complexity Low_complexity 1 180 0 2070 108 0 0 chr1 275407706 275407975 -6785689 + AluSx SINE Alu 1 269 -43 261 83 0 0 chr1 275407979 275408015 -6785649 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 338 255 57 0 chr1 275408058 275408199 -6785465 + L1MEd LINE L1 1446 1594 -4535 2094 89 27 20 chr1 275408597 275408890 -6784774 - AluSg SINE Alu -15 295 1 421 126 35 11 chr1 275408977 275409064 -6784600 + LTR33A LTR ERVL 408 496 -27 2149 106 10 0 chr1 275409383 275409676 -6783988 - AluSx SINE Alu -16 296 1 2025 136 7 10 chr1 275410212 275410521 -6783143 - AluSq SINE Alu -5 308 1 916 79 0 0 chr1 275410521 275410635 -6783029 - MER57B LTR ERV1 -320 114 1 305 331 45 8 chr1 275410815 275410948 -6782716 + L2 LINE L2 2941 3078 -194 2013 136 7 7 chr1 275411031 275411332 -6782332 - AluSx SINE Alu -11 301 1 405 0 0 0 chr1 275411721 275411766 -6781898 + (TTA)n Simple_repeat Simple_repeat 1 45 0 473 113 0 0 chr1 275411790 275411861 -6781803 + Alu SINE Alu 235 305 -7 340 209 27 64 chr1 275411874 275411984 -6781680 + MLT1H LTR MaLR 184 289 -260 1879 33 0 9 chr1 275412275 275412489 -6781175 - AluY SINE Alu -99 212 1 200 250 21 42 chr1 275413575 275413671 -6779993 + MIR3 SINE MIR 113 206 -2 277 79 0 0 chr1 275415475 275415513 -6778151 - tRNA-Leu-TTG tRNA tRNA -48 38 1 252 0 0 0 chr1 275415714 275415742 -6777922 + (T)n Simple_repeat Simple_repeat 1 28 0 864 148 0 0 chr1 275418578 275418706 -6774958 - FLAM_C SINE Alu -3 130 3 1885 191 62 31 chr1 275421666 275421881 -6771783 - MLT1C LTR MaLR 0 467 260 848 127 0 37 chr1 275421881 275422015 -6771649 - FLAM_C SINE Alu -3 130 2 1885 191 62 31 chr1 275422015 275422248 -6771416 - MLT1C LTR MaLR -207 260 5 2539 166 30 16 chr1 275422326 275422765 -6770899 + MER41D LTR ERV1 1 445 -112 905 180 6 29 chr1 275422766 275422783 -6770881 - FRAM SINE Alu -136 40 24 2263 107 10 3 chr1 275422783 275423091 -6770573 - AluSx SINE Alu -2 310 1 905 180 6 29 chr1 275423091 275423245 -6770419 - FRAM SINE Alu -152 24 1 253 265 153 10 chr1 275423297 275423396 -6770268 - MIR SINE MIR -65 143 38 204 387 25 0 chr1 275423725 275423844 -6769820 - L3 LINE CR1 -222 1355 1234 524 280 47 62 chr1 275424378 275424589 -6769075 - MIR SINE MIR -34 228 21 573 311 32 5 chr1 275425695 275425885 -6767779 - MIR SINE MIR -38 224 30 2044 111 10 16 chr1 275425890 275426197 -6767467 - AluY SINE Alu -5 306 2 2021 129 3 7 chr1 275426200 275426495 -6767169 - AluSx SINE Alu -18 294 1 28 0 0 0 chr1 275426547 275426575 -6767089 + AT_rich Low_complexity Low_complexity 1 28 0 275 325 25 17 chr1 275426696 275426816 -6766848 + MLT1K LTR MaLR 446 566 -22 2423 87 0 10 chr1 275426912 275427221 -6766443 - AluY SINE Alu -5 306 1 2145 141 0 0 chr1 275427301 275427605 -6766059 - AluSx SINE Alu -8 304 1 209 200 0 0 chr1 275427612 275427662 -6766002 + T-rich Low_complexity Low_complexity 1 50 0 7940 30 7 0 chr1 275427704 275429010 -6764654 - L1PA4 LINE L1 0 6155 4854 8519 60 1 0 chr1 275429010 275430067 -6763597 - L1P LINE L1 -4483 1663 606 1872 146 3 19 chr1 275430082 275430390 -6763274 - AluSx SINE Alu -9 303 1 258 275 109 22 chr1 275430548 275430686 -6762978 + MIR SINE MIR 47 196 -66 558 293 96 5 chr1 275431012 275431200 -6762464 - MIR SINE MIR 0 262 58 194 238 0 63 chr1 275432758 275432821 -6760843 + MIR3 SINE MIR 146 204 -4 29 70 0 0 chr1 275434918 275434975 -6758689 + AT_rich Low_complexity Low_complexity 1 57 0 1641 151 16 56 chr1 275435087 275435392 -6758272 - AluJo SINE Alu -14 298 6 463 279 101 13 chr1 275435487 275435645 -6758019 + MIR SINE MIR 15 186 -76 645 224 8 8 chr1 275435657 275435782 -6757882 - FLAM_C SINE Alu -7 126 2 2148 136 0 0 chr1 275436186 275436487 -6757177 - AluSx SINE Alu -11 301 1 741 271 42 52 chr1 275437421 275437731 -6755933 + MLT1J1 LTR MaLR 23 329 -117 677 142 4 3 chr1 275438158 275438399 -6755265 + AluJb SINE Alu 1 305 -7 299 313 156 44 chr1 275439291 275439792 -6753872 + L2 LINE L2 210 766 -2548 2315 94 7 0 chr1 275440162 275440459 -6753205 + AluSx SINE Alu 1 299 -13 250 105 70 23 chr1 275440983 275441069 -6752595 + (TTATA)n Simple_repeat Simple_repeat 2 91 0 222 83 111 0 chr1 275441456 275441492 -6752172 + L2 LINE L2 3268 3307 -6 1988 121 7 0 chr1 275441492 275441772 -6751892 + AluSq SINE Alu 1 282 -31 189 0 0 0 chr1 275441772 275441793 -6751871 + (CA)n Simple_repeat Simple_repeat 1 21 0 2292 104 0 0 chr1 275442021 275442320 -6751344 - AluSq SINE Alu -14 299 1 429 70 0 0 chr1 275443247 275443304 -6750360 + (TG)n Simple_repeat Simple_repeat 2 58 0 1216 109 0 0 chr1 275443316 275443472 -6750192 - AluSg/x SINE Alu -31 281 126 2489 59 3 13 chr1 275444048 275444355 -6749309 - AluY SINE Alu -7 304 1 22 70 0 0 chr1 275444498 275444541 -6749123 + AT_rich Low_complexity Low_complexity 1 43 0 1917 102 54 45 chr1 275445255 275445469 -6748195 - L1MA5A LINE L1 -7 6290 6070 3235 129 56 40 chr1 275445469 275445867 -6747797 + MER1A DNA MER1_type 1 410 -2290 2364 89 0 3 chr1 275445867 275446170 -6747494 + AluSx SINE Alu 11 312 0 3235 129 56 40 chr1 275446170 275446290 -6747374 + MER1A DNA MER1_type 410 527 0 1917 102 54 45 chr1 275446290 275446407 -6747257 - L1MA5A LINE L1 -227 6070 5956 2581 137 16 5 chr1 275447378 275447764 -6745900 - L1PA16 LINE L1 -9 6157 5768 218 322 58 58 chr1 275448228 275448349 -6745315 + L2 LINE L2 2922 3042 -230 2253 103 3 0 chr1 275448349 275448640 -6745024 - AluSg SINE Alu -17 293 2 314 51 0 0 chr1 275448728 275448767 -6744897 - L1MB2 LINE L1 -36 6135 6097 251 283 151 31 chr1 275449098 275449257 -6744407 + MIR SINE MIR 20 197 -65 295 212 253 0 chr1 275449302 275449401 -6744263 - L2 LINE L2 -1 3312 3189 237 266 78 0 chr1 275449467 275449531 -6744133 + L2 LINE L2 3242 3310 -3 332 254 0 0 chr1 275450340 275450403 -6743261 + FLAM SINE Alu 64 126 -7 3693 175 70 48 chr1 275450403 275451261 -6742403 + L1MB7 LINE L1 5236 6127 -57 21 0 0 0 chr1 275451261 275451282 -6742382 + AT_rich Low_complexity Low_complexity 1 21 0 935 129 0 0 chr1 275451282 275451414 -6742250 - AluSq/x SINE Alu -179 133 2 426 138 0 0 chr1 275451414 275451479 -6742185 + L1MB7 LINE L1 6111 6175 -9 4765 47 2 5 chr1 275452514 275453067 -6740597 + L1PA5 LINE L1 5603 6153 -1 25 0 0 0 chr1 275453575 275453600 -6740064 + AT_rich Low_complexity Low_complexity 1 25 0 295 348 0 50 chr1 275453951 275454092 -6739572 + MER5A DNA MER1_type 34 168 -21 3319 149 35 64 chr1 275454092 275454715 -6738949 - MER6A DNA MER2_type 0 605 1 295 348 0 50 chr1 275454715 275454734 -6738930 + MER5A DNA MER1_type 168 186 -3 217 304 14 0 chr1 275455145 275455214 -6738450 + MIR SINE MIR 127 196 -66 872 214 80 38 chr1 275456009 275456247 -6737417 + MIR SINE MIR 15 262 0 423 340 7 27 chr1 275456298 275456448 -6737216 - MIR3 SINE MIR -31 177 31 231 302 195 0 chr1 275456785 275456990 -6736674 - L1MC/D LINE L1 -1938 5870 5626 6299 143 22 5 chr1 275457066 275458777 -6734887 + L1PB1 LINE L1 4416 6151 0 1276 185 44 12 chr1 275459042 275459291 -6734373 + AluJo SINE Alu 50 306 -6 259 273 182 7 chr1 275459743 275459886 -6733778 + MIR SINE MIR 63 230 -32 4241 144 9 26 chr1 275460603 275461017 -6732647 - L1PB4 LINE L1 -1 6155 5756 2323 98 0 0 chr1 275461017 275461314 -6732350 - AluSx SINE Alu -15 297 1 4241 144 9 26 chr1 275461314 275461595 -6732069 - L1PB4 LINE L1 -400 5756 5472 2367 92 0 7 chr1 275461986 275462289 -6731375 + AluSc SINE Alu 1 301 -8 389 233 233 8 chr1 275462439 275462559 -6731105 - MIR SINE MIR -13 249 103 2287 108 13 0 chr1 275462785 275463091 -6730573 - AluSx SINE Alu 0 312 3 185 308 0 0 chr1 275463695 275463747 -6729917 + MIR SINE MIR 102 153 -109 245 256 56 56 chr1 275463795 275463846 -6729818 - MIR3 SINE MIR -34 174 121 3876 109 49 80 chr1 275463846 275464500 -6729164 + MER51A LTR ERV1 1 634 0 245 256 56 56 chr1 275464500 275464538 -6729126 - MIR3 SINE MIR -86 122 85 251 154 0 19 chr1 275464556 275464608 -6729056 + CT-rich Low_complexity Low_complexity 3 53 0 572 189 90 9 chr1 275465234 275465345 -6728319 + 5S rRNA rRNA 1 120 -1 34 55 0 0 chr1 275465348 275465403 -6728261 + AT_rich Low_complexity Low_complexity 1 55 0 324 223 187 78 chr1 275465941 275466107 -6727557 + MIR SINE MIR 12 195 -67 243 244 0 0 chr1 275466120 275466198 -6727466 + (TA)n Simple_repeat Simple_repeat 1 78 0 3210 126 11 2 chr1 275467984 275468428 -6725236 + MER83 LTR ERV1 1 448 0 1603 189 25 0 chr1 275471324 275471605 -6722059 + AluJb SINE Alu 1 288 -24 627 222 108 17 chr1 275471633 275471809 -6721855 + LTR47A LTR ERVL 261 452 0 396 82 0 0 chr1 275473673 275473734 -6719930 + (TC)n Simple_repeat Simple_repeat 2 62 0 1523 114 43 0 chr1 275473769 275473980 -6719684 - AluSq SINE Alu -93 220 1 1802 141 6 78 chr1 275473982 275474315 -6719349 - AluSq SINE Alu -4 309 1 205 366 15 53 chr1 275474433 275474564 -6719100 - L2 LINE L2 -229 3043 2918 1872 136 6 86 chr1 275474792 275475131 -6718533 - AluSx SINE Alu 0 312 1 31 0 0 0 chr1 275475133 275475164 -6718500 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr1 275475208 275475240 -6718424 + AT_rich Low_complexity Low_complexity 1 32 0 2186 130 3 0 chr1 275475462 275475769 -6717895 + AluSx SINE Alu 1 308 -4 545 276 89 39 chr1 275475937 275476140 -6717524 - MIR SINE MIR -42 220 8 213 265 0 0 chr1 275476176 275476225 -6717439 - L2 LINE L2 -1040 2274 2226 355 302 103 9 chr1 275476312 275476428 -6717236 + L2 LINE L2 3187 3313 0 21 0 0 0 chr1 275476558 275476579 -6717085 + AT_rich Low_complexity Low_complexity 1 21 0 2021 117 0 11 chr1 275476661 275476934 -6716730 - AluSx SINE Alu -38 274 5 6177 255 85 42 chr1 275477975 275480628 -6713036 - L1ME1 LINE L1 -3 6958 3966 276 30 0 0 chr1 275480628 275480661 -6713003 + (CA)n Simple_repeat Simple_repeat 2 34 0 6177 255 85 42 chr1 275480661 275482708 -6710956 - L1ME1 LINE L1 -2995 3966 2008 1004 176 0 6 chr1 275482799 275482981 -6710683 - L1MD1 LINE L1 0 6242 6062 1218 231 34 9 chr1 275483004 275483324 -6710340 - MLT1D LTR MaLR -58 447 120 33230 103 12 53 chr1 275483324 275489733 -6703931 - L1PA7 LINE L1 -5 6149 12 1193 282 114 39 chr1 275489736 275490561 -6703103 - L1ME1 LINE L1 -4899 1524 822 259 262 74 74 chr1 275490810 275490959 -6702705 - L1ME1 LINE L1 -6000 423 275 1628 174 0 43 chr1 275490960 275491264 -6702400 - AluJb SINE Alu -1 311 21 371 240 54 64 chr1 275491423 275491568 -6702096 + L1ME4a LINE L1 5714 5858 -263 2170 116 0 7 chr1 275491568 275491869 -6701795 + AluSg SINE Alu 1 299 -11 371 240 54 64 chr1 275491869 275491927 -6701737 + L1ME4a LINE L1 5858 5915 -206 2214 64 167 6 chr1 275492077 275492389 -6701275 - THE1B LTR MaLR -2 362 1 2527 60 0 10 chr1 275494092 275494406 -6699258 - AluY SINE Alu 0 311 1 257 289 21 10 chr1 275494692 275494789 -6698875 + GA-rich Low_complexity Low_complexity 2 99 0 21 0 0 0 chr1 275495360 275495381 -6698283 + AT_rich Low_complexity Low_complexity 1 21 0 5501 134 5 22 chr1 275496595 275497399 -6696265 - MER54B LTR ERVL -3 790 1 429 20 0 0 chr1 275498031 275498081 -6695583 + (TAA)n Simple_repeat Simple_repeat 2 51 0 2859 104 0 8 chr1 275498177 275498542 -6695122 - THE1B LTR MaLR -2 362 1 556 283 34 0 chr1 275498542 275498719 -6694945 - MIR SINE MIR -8 254 72 243 333 10 20 chr1 275498902 275499004 -6694660 + MER5B DNA MER1_type 2 102 -76 189 0 0 0 chr1 275499810 275499831 -6693833 + (T)n Simple_repeat Simple_repeat 1 21 0 18182 136 23 90 chr1 275500113 275503891 -6689773 + L1PA7 LINE L1 13 3536 -2610 11588 43 8 0 chr1 275503891 275506017 -6687647 + L1PA5 LINE L1 4020 6153 -1 * 13129 98 32 5 chr1 275506014 275508534 -6685130 + L1PA7 LINE L1 3589 6152 -2 438 234 146 32 chr1 275510227 275510385 -6683279 + MER97a DNA MER1_type? 1 176 -718 2171 120 0 0 chr1 275510584 275510875 -6682789 + AluSx SINE Alu 1 291 -21 234 0 0 0 chr1 275510885 275510911 -6682753 + (TG)n Simple_repeat Simple_repeat 2 27 0 220 336 129 32 chr1 275511065 275511282 -6682382 + MIR SINE MIR 25 262 0 725 186 57 83 chr1 275511542 275511666 -6681998 - MER5A DNA MER1_type -1 188 69 1857 155 0 14 chr1 275511666 275511989 -6681675 + AluJo SINE Alu 5 312 0 725 186 57 83 chr1 275511989 275512057 -6681607 - MER5A DNA MER1_type -120 69 1 639 256 119 12 chr1 275512067 275512227 -6681437 - MER5A DNA MER1_type 0 189 13 852 173 261 15 chr1 275512247 275512507 -6681157 + MER33 DNA MER1_type 1 324 0 1687 111 91 12 chr1 275512621 275512873 -6680791 - AluSc SINE Alu -9 300 29 2252 119 0 0 chr1 275513521 275513833 -6679831 + AluSx SINE Alu 1 312 0 21 36 0 0 chr1 275514142 275514170 -6679494 + AT_rich Low_complexity Low_complexity 1 28 0 1900 224 139 30 chr1 275514487 275514574 -6679090 - MER119 DNA MER1_type 0 583 507 2322 46 3 3 chr1 275514574 275514885 -6678779 + AluY SINE Alu 1 311 0 1900 224 139 30 chr1 275514885 275515322 -6678342 - MER119 DNA MER1_type -76 507 1 1832 133 58 14 chr1 275515334 275515628 -6678036 - AluSx SINE Alu -5 307 1 23 54 0 0 chr1 275517032 275517069 -6676595 + AT_rich Low_complexity Low_complexity 1 37 0 2240 124 0 0 chr1 275517143 275517442 -6676222 - AluSx SINE Alu -13 299 1 308 301 151 7 chr1 275517659 275517805 -6675859 - MIR SINE MIR -73 189 23 397 290 129 24 chr1 275518196 275518444 -6675220 + MLT1J LTR MaLR 238 511 0 25 31 0 0 chr1 275518460 275518492 -6675172 + AT_rich Low_complexity Low_complexity 1 32 0 321 220 113 57 chr1 275518519 275518660 -6675004 - L1ME4a LINE L1 -263 5858 5710 227 316 10 31 chr1 275518701 275518799 -6674865 - L2 LINE L2 -268 3004 2909 429 163 0 70 chr1 275519642 275519728 -6673936 - 7SK RNA RNA 0 193 114 2417 92 0 3 chr1 275520123 275520426 -6673238 + AluSg SINE Alu 1 302 -8 884 308 102 15 chr1 275520461 275520950 -6672714 - L2 LINE L2 -1 3312 2780 2384 87 0 3 chr1 275521096 275521405 -6672259 - AluY SINE Alu -3 308 1 831 164 0 15 chr1 275521559 275521693 -6671971 + FLAM_C SINE Alu 2 133 0 2079 146 0 0 chr1 275522263 275522564 -6671100 + AluSx SINE Alu 1 301 -11 207 278 28 0 chr1 275522727 275522799 -6670865 + GA-rich Low_complexity Low_complexity 2 75 0 342 304 16 24 chr1 275523011 275523136 -6670528 + L2 LINE L2 2224 2347 -967 217 352 35 42 chr1 275524660 275524802 -6668862 + MIR SINE MIR 60 200 -62 4334 107 29 10 chr1 275525255 275525517 -6668147 + L1PB1 LINE L1 5519 5774 -377 633 38 0 0 chr1 275525517 275525597 -6668067 + (TCTA)n Simple_repeat Simple_repeat 4 83 0 4334 107 29 10 chr1 275525597 275525954 -6667710 + L1PB1 LINE L1 5774 6150 -1 294 266 105 28 chr1 275526001 275526144 -6667520 + L3 LINE CR1 1317 1470 -107 279 190 0 0 chr1 275527467 275527525 -6666139 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 236 264 0 69 chr1 275527700 275527787 -6665877 - L1ME4a LINE L1 -105 6016 5936 598 126 11 0 chr1 275527862 275527949 -6665715 - FLAM_A SINE Alu -20 122 35 250 318 133 30 chr1 275528317 275528550 -6665114 + L2 LINE L2 2819 3075 -197 2164 97 4 0 chr1 275528554 275528833 -6664831 - AluSx SINE Alu -11 301 22 303 28 0 0 chr1 275528991 275529027 -6664637 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1116 176 24 103 chr1 275529515 275529661 -6664003 + MER33 DNA MER1_type 21 128 -2457 2218 88 11 0 chr1 275529661 275529945 -6663719 - AluSp SINE Alu -26 287 1 1116 176 24 103 chr1 275529945 275530128 -6663536 + MER33 DNA MER1_type 128 324 0 2155 186 36 27 chr1 275530151 275530179 -6663485 - L1PB4 LINE L1 -2 6154 6128 2169 112 0 0 chr1 275530179 275530466 -6663198 - AluSx SINE Alu -25 287 1 2155 186 36 27 chr1 275530466 275530882 -6662782 - L1PB4 LINE L1 -28 6128 5706 208 292 23 64 chr1 275531570 275531754 -6661910 + MIR SINE MIR 44 216 -46 200 86 29 0 chr1 275532418 275532453 -6661211 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 719 196 0 0 chr1 275532453 275532565 -6661099 - FRAM SINE Alu -32 144 33 44 0 0 0 chr1 275532573 275532617 -6661047 + AT_rich Low_complexity Low_complexity 1 44 0 2193 120 7 0 chr1 275532844 275533152 -6660512 + AluSx SINE Alu 1 310 -2 416 248 124 50 chr1 275533430 275533591 -6660073 - L3 LINE CR1 -88 1489 1317 224 279 15 0 chr1 275533646 275533714 -6659950 - L2 LINE L2 0 3313 3245 1942 195 7 61 chr1 275533854 275534330 -6659334 + MER89 LTR ERV1 2 511 -48 2554 153 57 2 chr1 275534330 275534734 -6658930 + MSTB LTR MaLR 1 426 0 1942 195 7 61 chr1 275534734 275534781 -6658883 + MER89 LTR ERV1 511 559 0 421 304 100 68 chr1 275534827 275534866 -6658798 - L3 LINE CR1 -814 763 727 2202 79 13 40 chr1 275534866 275535170 -6658494 + AluY SINE Alu 1 296 -15 421 304 100 68 chr1 275535170 275535511 -6658153 - L3 LINE CR1 -850 727 371 383 271 142 40 chr1 275535545 275535770 -6657894 - MIR SINE MIR -13 249 2 309 368 84 21 chr1 275535780 275536019 -6657645 + L3 LINE CR1 931 1184 -393 404 105 0 0 chr1 275537295 275537352 -6656312 - MLT2C1 LTR ERVL 0 520 464 2391 136 97 12 chr1 275537352 275537763 -6655901 - Tigger2 DNA MER2_type 0 2718 2273 1698 193 11 23 chr1 275537807 275538155 -6655509 - MLT2C1 LTR ERVL -53 344 1 241 360 27 0 chr1 275538410 275538521 -6655143 + L2 LINE L2 2866 2979 -293 353 248 139 0 chr1 275538528 275538629 -6655035 - L1ME2 LINE L1 -287 5877 5763 960 158 0 0 chr1 275538650 275538948 -6654716 + (TA)n Simple_repeat Simple_repeat 1 298 0 1020 176 0 0 chr1 275538948 275539101 -6654563 - AluJb SINE Alu -27 285 133 236 238 79 0 chr1 275539291 275539354 -6654310 - MER103 DNA DNA -67 99 32 3477 135 87 61 chr1 275540259 275540721 -6652943 + Tigger1 DNA MER2_type 1 488 -1930 2148 114 0 0 chr1 275540721 275541002 -6652662 - AluSx SINE Alu -27 285 5 3477 135 87 61 chr1 275541002 275541228 -6652436 + Tigger1 DNA MER2_type 488 707 -1711 1405 71 0 6 chr1 275541229 275541412 -6652252 + LTR7 LTR ERV1 1 182 -268 2805 72 3 6 chr1 275541420 275541780 -6651884 + LTR7 LTR ERV1 90 448 -2 2011 148 6 0 chr1 275541781 275542099 -6651565 + Tigger1 DNA MER2_type 707 1026 -1392 2061 199 69 13 chr1 275542099 275542577 -6651087 + LTR22 LTR ERVK 1 505 -4 5116 109 28 5 chr1 275542583 275543327 -6650337 + HERVK22 LTR ERVK 2 762 -6075 21049 108 22 13 chr1 275543733 275545784 -6647880 + HERVK22 LTR ERVK 2327 4358 -2479 2220 101 0 38 chr1 275545784 275546100 -6647564 - AluY SINE Alu -7 304 1 21049 108 22 13 chr1 275546100 275547195 -6646469 + HERVK22 LTR ERVK 4358 6837 0 2599 149 22 57 chr1 275547195 275547705 -6645959 + LTR22B LTR ERVK 1 492 0 8983 108 45 13 chr1 275547706 275548253 -6645411 + Tigger1 DNA MER2_type 1022 1550 -868 2066 102 27 31 chr1 275548253 275548547 -6645117 + AluSq SINE Alu 1 293 -20 8983 108 45 13 chr1 275548547 275549351 -6644313 + Tigger1 DNA MER2_type 1550 2417 -1 640 315 36 14 chr1 275549637 275549859 -6643805 + MIR SINE MIR 19 245 -17 269 26 0 26 chr1 275551208 275551247 -6642417 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 231 284 147 0 chr1 275551297 275551406 -6642258 + MIR SINE MIR 11 135 -127 1947 134 0 0 chr1 275551603 275551927 -6641737 - AluSx SINE Alu 0 345 22 1704 209 89 25 chr1 275552791 275553227 -6640437 - MLT1C LTR MaLR -3 464 1 256 296 0 42 chr1 275553784 275553855 -6639809 - L2 LINE L2 -2 3270 3203 1851 177 57 17 chr1 275553899 275554250 -6639414 - MLT1A1 LTR MaLR 0 365 1 288 0 0 0 chr1 275554763 275554795 -6638869 + (GA)n Simple_repeat Simple_repeat 2 33 0 1143 247 88 34 chr1 275555738 275556201 -6637463 - L1ME1 LINE L1 -3 6163 5732 352 237 31 41 chr1 275556200 275556297 -6637367 - L1MD2 LINE L1 -298 5872 5777 * 325 250 43 11 chr1 275556297 275556389 -6637275 - L1MD2 LINE L1 -488 5871 5777 299 259 49 12 chr1 275556400 275556481 -6637183 - L1MC/D LINE L1 -499 5860 5777 284 272 49 12 chr1 275556492 275556573 -6637091 - L1MC/D LINE L1 -499 5860 5777 1817 244 3 5 chr1 275556573 275556958 -6636706 - L1ME1 LINE L1 -298 5868 5485 22 0 0 0 chr1 275557030 275557052 -6636612 + AT_rich Low_complexity Low_complexity 1 22 0 769 186 23 0 chr1 275558130 275558259 -6635405 - FLAM_A SINE Alu -1 132 1 2031 139 3 7 chr1 275558274 275558575 -6635089 - AluSx SINE Alu -12 300 1 396 155 0 0 chr1 275559557 275559628 -6634036 + GA-rich Low_complexity Low_complexity 3 73 0 260 174 0 0 chr1 275560423 275560469 -6633195 - L1ME1 LINE L1 -1549 4597 4552 648 274 52 52 chr1 275560495 275560824 -6632840 - L1ME1 LINE L1 -1713 4433 4105 1044 191 11 5 chr1 275560887 275561075 -6632589 + MER20 DNA MER1_type 31 219 0 379 279 101 48 chr1 275562847 275563224 -6630440 + HAL1 LINE L1 1142 1538 -969 1610 171 0 0 chr1 275563521 275563779 -6629885 + AluSx SINE Alu 50 307 -5 2133 110 3 0 chr1 275563784 275564066 -6629598 + AluSx SINE Alu 1 283 -29 342 0 0 0 chr1 275564066 275564104 -6629560 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 184 140 18 35 chr1 275564443 275564500 -6629164 + GA-rich Low_complexity Low_complexity 4 59 0 186 71 0 0 chr1 275564527 275564555 -6629109 + (CAAG)n Simple_repeat Simple_repeat 2 29 0 508 254 75 50 chr1 275565812 275566013 -6627651 + MIR SINE MIR 28 233 -29 209 128 21 64 chr1 275566126 275566173 -6627491 + L2 LINE L2 3269 3313 0 1588 181 11 4 chr1 275566945 275567216 -6626448 + MLT1A1 LTR MaLR 93 365 0 555 260 17 11 chr1 275568277 275568454 -6625210 + LTR41 LTR ERVL 2 179 -594 470 169 17 68 chr1 275568697 275568815 -6624849 - MER53 DNA DNA 0 189 78 355 160 9 38 chr1 275568945 275569035 -6624629 + LTR41 LTR ERVL 704 795 0 334 295 245 5 chr1 275570572 275570772 -6622892 + MIR SINE MIR 15 262 0 22 0 0 0 chr1 275571924 275571946 -6621718 + AT_rich Low_complexity Low_complexity 1 22 0 440 148 0 33 chr1 275572783 275572905 -6620759 + (TA)n Simple_repeat Simple_repeat 1 118 0 279 0 0 0 chr1 275572906 275572937 -6620727 + (CA)n Simple_repeat Simple_repeat 2 32 0 278 250 83 0 chr1 275573006 275573078 -6620586 + L2 LINE L2 3235 3312 -1 505 304 47 0 chr1 275573479 275573627 -6620037 + MIR SINE MIR 70 224 -38 545 266 58 0 chr1 275576858 275576997 -6616667 - MIR SINE MIR -21 241 95 1309 198 22 18 chr1 275577002 275577275 -6616389 + AluJo SINE Alu 24 297 -15 351 0 0 0 chr1 275577373 275577412 -6616252 + (CA)n Simple_repeat Simple_repeat 2 40 0 1457 205 22 36 chr1 275577595 275577866 -6615798 - MER4D LTR ERV1 0 903 637 2485 38 3 0 chr1 275577866 275578157 -6615507 - AluY SINE Alu -19 292 1 1457 205 22 36 chr1 275578157 275578246 -6615418 - MER4D LTR ERV1 -266 637 548 481 198 0 28 chr1 275578253 275578359 -6615305 - MER4E LTR ERV1 -615 164 62 * 1437 157 44 4 chr1 275578351 275578625 -6615039 - MER49 LTR ERV1 -638 285 1 1212 141 14 9 chr1 275579036 275579256 -6614408 + LTR56 LTR ERV1 9 229 -216 548 53 27 0 chr1 275579256 275579331 -6614333 + L1PA7 LINE L1 6077 6153 -1 847 196 62 13 chr1 275579356 275579600 -6614064 + LTR56 LTR ERV1 199 445 0 909 152 46 60 chr1 275579686 275579740 -6613924 + MSTD LTR MaLR 1 54 -403 1652 120 120 8 chr1 275579740 275579999 -6613665 + AluSg1 SINE Alu 1 288 -21 909 152 46 60 chr1 275579999 275580356 -6613308 + MSTD LTR MaLR 54 457 0 821 336 101 52 chr1 275581574 275582946 -6610718 - L2 LINE L2 -561 2753 1315 843 131 15 0 chr1 275583304 275583434 -6610230 + FLAM_C SINE Alu 2 133 0 2326 107 0 0 chr1 275583674 275583972 -6609692 - AluSg SINE Alu -12 298 1 933 161 6 72 chr1 275583973 275584153 -6609511 - FRAM SINE Alu -8 168 1 2671 39 0 3 chr1 275584163 275584471 -6609193 - AluY SINE Alu -4 307 1 378 255 56 142 chr1 275585095 275585247 -6608417 - MIR SINE MIR -12 250 86 2217 95 3 0 chr1 275585247 275585532 -6608132 + AluSq SINE Alu 1 286 -27 207 0 0 0 chr1 275585534 275585557 -6608107 + (CCA)n Simple_repeat Simple_repeat 3 25 0 378 255 56 142 chr1 275585557 275585668 -6607996 - MIR SINE MIR -177 85 7 881 45 0 0 chr1 275586355 275586465 -6607199 + L1PA5 LINE L1 6040 6149 -5 816 239 65 99 chr1 275587231 275587603 -6606061 + MLT1A1 LTR MaLR 6 364 -1 892 105 52 12 chr1 275587608 275588024 -6605640 + (TCTA)n Simple_repeat Simple_repeat 1 432 0 1021 135 48 24 chr1 275588392 275588599 -6605065 + L1MA8 LINE L1 6050 6261 -30 22 56 0 0 chr1 275588615 275588651 -6605013 + AT_rich Low_complexity Low_complexity 1 36 0 1067 198 204 34 chr1 275589343 275589788 -6603876 + HsTC2a DNA Tc2 8 528 -216 251 408 32 8 chr1 275589794 275589919 -6603745 + L2 LINE L2 3140 3267 -5 828 191 0 0 chr1 275590019 275590160 -6603504 + FRAM SINE Alu 1 138 -38 25 0 0 0 chr1 275590186 275590211 -6603453 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr1 275590422 275590450 -6603214 + AT_rich Low_complexity Low_complexity 1 28 0 2257 117 0 0 chr1 275590926 275591224 -6602440 + AluSg SINE Alu 1 298 -12 28 29 0 0 chr1 275591485 275591520 -6602144 + AT_rich Low_complexity Low_complexity 1 35 0 476 247 72 23 chr1 275591521 275591784 -6601880 + L1ME3A LINE L1 2739 3014 -3132 2407 287 72 5 chr1 275591792 275593319 -6600345 + L1ME3A LINE L1 4523 6155 -15 22 0 0 0 chr1 275595796 275595818 -6597846 + AT_rich Low_complexity Low_complexity 1 22 0 402 262 69 0 chr1 275596654 275596793 -6596871 + MIR SINE MIR 42 198 -64 1961 154 0 16 chr1 275596953 275597259 -6596405 + AluSx SINE Alu 1 301 -11 2129 125 3 0 chr1 275597694 275598005 -6595659 + AluSx SINE Alu 1 312 0 209 250 0 14 chr1 275598006 275598078 -6595586 + GA-rich Low_complexity Low_complexity 2 72 0 240 256 12 23 chr1 275598455 275598470 -6595194 + GA-rich Low_complexity Low_complexity 4 18 -70 1613 164 20 31 chr1 275598470 275598762 -6594902 + AluJo SINE Alu 15 303 -9 240 256 12 23 chr1 275598762 275598832 -6594832 + GA-rich Low_complexity Low_complexity 18 88 0 2117 122 0 16 chr1 275599698 275600001 -6593663 - AluSx SINE Alu -14 298 1 502 206 109 106 chr1 275600307 275600675 -6592989 - MER34C LTR ERV1 0 585 217 396 183 8 150 chr1 275600682 275600802 -6592862 - MER34 LTR ERV1 -428 114 9 419 299 34 14 chr1 275601172 275601319 -6592345 - MIR3 SINE MIR -15 193 44 333 0 0 0 chr1 275602037 275602074 -6591590 + (CA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr1 275602073 275602094 -6591570 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 247 182 0 0 chr1 275602738 275602782 -6590882 + MER106A DNA MER1_type 1 44 -192 544 191 86 13 chr1 275602787 275602939 -6590725 + MER106B DNA MER1_type 897 1059 0 342 327 84 49 chr1 275603078 275603634 -6590030 + L1M4 LINE L1 2453 3028 -3118 3748 53 6 0 chr1 275603761 275604231 -6589433 - L1PA8 LINE L1 0 6172 5700 1606 233 34 40 chr1 275604431 275604937 -6588727 + MLT1D LTR MaLR 3 505 0 658 182 15 38 chr1 275605116 275605248 -6588416 + FLAM_C SINE Alu 1 129 -4 2454 67 0 0 chr1 275605322 275605619 -6588045 + AluY SINE Alu 1 297 -14 190 95 48 24 chr1 275606200 275606242 -6587422 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 317 346 60 17 chr1 275606635 275606869 -6586795 - L2 LINE L2 -458 2856 2613 1196 210 22 18 chr1 275606905 275607181 -6586483 + AluJo SINE Alu 1 277 -35 357 204 21 0 chr1 275607185 275607327 -6586337 + (TA)n Simple_repeat Simple_repeat 1 145 0 354 240 70 45 chr1 275608300 275608542 -6585122 + L1ME4a LINE L1 5636 5883 -238 2150 135 0 0 chr1 275608560 275608864 -6584800 + AluSx SINE Alu 1 304 -8 388 329 126 24 chr1 275609488 275609655 -6584009 + L2 LINE L2 3084 3267 -5 190 150 0 50 chr1 275609830 275609870 -6583794 + L3b LINE CR1 1196 1233 -350 615 259 17 6 chr1 275610166 275610340 -6583324 - MER5B DNA MER1_type 0 178 3 2038 124 3 7 chr1 275610385 275610691 -6582973 - AluSc SINE Alu -3 306 2 246 275 12 0 chr1 275610921 275611001 -6582663 - MIR SINE MIR -54 208 128 22 56 0 0 chr1 275611001 275611037 -6582627 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr1 275611598 275611634 -6582030 + AT_rich Low_complexity Low_complexity 1 36 0 739 231 24 76 chr1 275612990 275613262 -6580402 - MIR SINE MIR -1 261 5 23 33 0 0 chr1 275614399 275614429 -6579235 + AT_rich Low_complexity Low_complexity 1 30 0 2152 103 23 16 chr1 275614981 275615291 -6578373 - AluSx SINE Alu 0 312 1 1763 126 16 0 chr1 275616118 275616365 -6577299 + AluSq SINE Alu 40 290 -23 2076 124 0 3 chr1 275616686 275616995 -6576669 + AluSx SINE Alu 1 308 0 790 279 41 79 chr1 275617144 275617677 -6575987 + MER34 LTR ERV1 1 513 -29 308 283 125 0 chr1 275618099 275618219 -6575445 + MLT1G1 LTR MaLR 427 561 -34 266 306 41 20 chr1 275618882 275618980 -6574684 - MER91C DNA MER1_type -22 118 19 194 300 20 0 chr1 275619807 275619857 -6573807 + L2 LINE L2 3244 3294 -19 2095 111 0 20 chr1 275620217 275620515 -6573149 - AluSx SINE Alu -20 292 1 190 326 109 92 chr1 275621913 275622272 -6571392 + L2 LINE L2 2855 3219 -53 2508 71 0 3 chr1 275622387 275622696 -6570968 + AluY SINE Alu 1 308 -3 1099 247 117 19 chr1 275623418 275623880 -6569784 + Charlie4a DNA MER1_type 1 507 -1 1437 198 69 3 chr1 275624196 275624499 -6569165 + MER44D DNA MER2_type 17 609 0 346 321 155 0 chr1 275625457 275625625 -6568039 + MIR SINE MIR 55 248 -14 4464 177 9 7 chr1 275626002 275626772 -6566892 - L1PA16 LINE L1 -13 6153 5382 310 329 165 0 chr1 275626849 275627007 -6566657 + MIR SINE MIR 55 238 -24 1160 194 108 0 chr1 275627019 275627297 -6566367 - L1 LINE L1 -743 5403 5096 1383 151 47 68 chr1 275627576 275627855 -6565809 - AluJo SINE Alu -19 293 21 2214 127 0 3 chr1 275627926 275628234 -6565430 + AluSc SINE Alu 1 307 -2 1026 160 18 12 chr1 275628266 275628435 -6565229 - FRAM SINE Alu -9 167 1 2585 56 0 6 chr1 275628484 275628803 -6564861 - AluYb8 SINE Alu -1 317 1 1075 258 38 27 chr1 275628812 275629180 -6564484 - L1MEc LINE L1 -3379 2836 2465 264 247 58 49 chr1 275629199 275629417 -6564247 - L1MEc LINE L1 -4939 1276 1056 703 211 0 0 chr1 275629670 275629798 -6563866 + AluSg/x SINE Alu 178 305 -7 1008 166 18 12 chr1 275629835 275630004 -6563660 - FRAM SINE Alu -9 167 1 501 226 67 51 chr1 275630026 275630053 -6563611 - L1MC4 LINE L1 -968 7074 7049 2950 9 0 0 chr1 275630053 275630370 -6563294 - AluYb8 SINE Alu -1 317 1 501 226 67 51 chr1 275630370 275630537 -6563127 - L1MC4 LINE L1 -993 7049 6877 225 332 107 39 chr1 275630758 275630963 -6562701 - MIR SINE MIR -27 235 17 30 0 0 0 chr1 275631543 275631573 -6562091 + AT_rich Low_complexity Low_complexity 1 30 0 1735 94 51 0 chr1 275631573 275631828 -6561836 - L1MA1 LINE L1 0 6302 6035 579 258 6 49 chr1 275631828 275631991 -6561673 - MIR SINE MIR -105 157 2 835 300 68 57 chr1 275632333 275632588 -6561076 - L2 LINE L2 -85 3228 2977 1942 117 0 19 chr1 275632588 275632853 -6560811 + AluSq SINE Alu 1 260 -53 835 300 68 57 chr1 275632853 275632883 -6560781 - L2 LINE L2 -336 2977 2949 261 0 0 0 chr1 275632883 275632912 -6560752 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 835 300 68 57 chr1 275632912 275633337 -6560327 - L2 LINE L2 -364 2949 2511 1237 156 54 58 chr1 275633798 275634074 -6559590 + MER34B LTR ERV1 5 279 -286 1246 146 10 94 chr1 275634088 275634176 -6559488 + MER7A DNA MER2_type 22 116 -2912 2103 110 0 32 chr1 275634176 275634512 -6559152 - AluSq SINE Alu 0 313 1 1246 146 10 94 chr1 275634512 275634721 -6558943 + MER7A DNA MER2_type 116 336 0 794 207 0 0 chr1 275634722 275634867 -6558797 + MER34B LTR ERV1 276 420 -145 1789 172 3 7 chr1 275634867 275635157 -6558507 + AluJo SINE Alu 1 289 -23 694 184 86 13 chr1 275635186 275635338 -6558326 + MER34C LTR ERV1 423 585 0 303 76 36 22 chr1 275635439 275635495 -6558169 - tRNA-Leu-CTG tRNA tRNA -35 51 1 248 316 63 25 chr1 275635625 275635783 -6557881 - MER117 DNA MER1_type -16 181 18 22 0 0 0 chr1 275636022 275636044 -6557620 + AT_rich Low_complexity Low_complexity 1 22 0 1783 162 0 7 chr1 275637263 275637553 -6556111 + AluJb SINE Alu 11 298 -14 1827 110 7 18 chr1 275637986 275638258 -6555406 - AluSc SINE Alu -7 302 34 468 0 0 0 chr1 275639172 275639224 -6554440 + (CA)n Simple_repeat Simple_repeat 2 53 0 396 59 0 0 chr1 275639771 275639822 -6553842 + (ATG)n Simple_repeat Simple_repeat 2 52 0 288 308 38 53 chr1 275639901 275640034 -6553630 - MIR SINE MIR -110 152 22 21 36 0 0 chr1 275640495 275640523 -6553141 + AT_rich Low_complexity Low_complexity 1 28 0 253 320 160 20 chr1 275640747 275640897 -6552767 + MIR3 SINE MIR 11 181 -27 24 32 0 0 chr1 275640930 275640961 -6552703 + AT_rich Low_complexity Low_complexity 1 31 0 1182 92 98 27 chr1 275641595 275641754 -6551910 + MER107 DNA MER1_type 1 176 -21 180 0 0 0 chr1 275641754 275641774 -6551890 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1182 92 98 27 chr1 275641774 275641798 -6551866 + MER107 DNA MER1_type 176 197 0 2206 105 48 0 chr1 275641810 275642105 -6551559 - AluSx SINE Alu -3 309 1 566 117 0 0 chr1 275643017 275643094 -6550570 - MADE1 DNA Mariner -1 79 3 238 224 134 26 chr1 275643196 275643325 -6550339 - MIR SINE MIR -24 184 43 712 243 72 81 chr1 275643360 275643694 -6549970 - MER46C DNA MER2_type -2 336 6 637 134 9 54 chr1 275643814 275643926 -6549738 - MER5A DNA MER1_type -82 107 1 222 325 100 0 chr1 275643926 275644004 -6549660 + MIR SINE MIR 17 102 -160 2687 202 93 15 chr1 275644004 275644790 -6548874 - L1M4c LINE L1 -4516 2511 1501 233 307 80 58 chr1 275645202 275645427 -6548237 - L1M4c LINE L1 -6800 230 1 341 312 9 0 chr1 275645458 275645567 -6548097 + MIR SINE MIR 152 261 -1 203 195 24 0 chr1 275647012 275647053 -6546611 + CT-rich Low_complexity Low_complexity 3 44 0 269 261 0 31 chr1 275647827 275647892 -6545772 - L2 LINE L2 -10 3262 3200 561 225 117 0 chr1 275648080 275648191 -6545473 - FLAM_A SINE Alu -6 127 4 712 289 65 8 chr1 275648375 275648621 -6545043 + MIR SINE MIR 3 262 0 24 63 0 16 chr1 275649003 275649042 -6544622 + AT_rich Low_complexity Low_complexity 1 40 -22 3256 92 24 21 chr1 275649042 275649440 -6544224 - L1PA13 LINE L1 -8 6155 5754 2092 124 0 23 chr1 275649440 275649746 -6543918 - AluSx SINE Alu -13 299 1 3256 92 24 21 chr1 275649746 275649813 -6543851 - L1PA13 LINE L1 -409 5754 5689 24 63 0 16 chr1 275649813 275649836 -6543828 + AT_rich Low_complexity Low_complexity 40 62 0 783 128 15 30 chr1 275651077 275651210 -6542454 - FLAM_C SINE Alu -1 142 12 2146 179 64 114 chr1 275651868 275652567 -6541097 + MER4A LTR ERV1 1 664 0 825 183 40 29 chr1 275653163 275653338 -6540326 - MER5B DNA MER1_type 0 178 2 2436 170 120 22 chr1 275653476 275653725 -6539939 + LTR49 LTR ERV1 2 225 -370 2209 119 3 3 chr1 275653725 275654036 -6539628 - AluSq SINE Alu -2 311 1 2436 170 120 22 chr1 275654036 275654326 -6539338 + LTR49 LTR ERV1 225 594 -1 466 225 156 119 chr1 275654674 275654959 -6538705 + L2 LINE L2 2860 3101 -171 1954 106 220 28 chr1 275654959 275655318 -6538346 + MSTA LTR MaLR 1 428 0 466 225 156 119 chr1 275655318 275655496 -6538168 + L2 LINE L2 3101 3271 -1 22 35 0 0 chr1 275655514 275655543 -6538121 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1 275656178 275656207 -6537457 + AT_rich Low_complexity Low_complexity 1 29 0 3240 197 18 56 chr1 275656841 275657558 -6536106 + LTR8 LTR ERV1 1 690 -1 357 228 7 13 chr1 275657804 275657953 -6535711 + GA-rich Low_complexity Low_complexity 2 149 0 632 53 0 0 chr1 275657955 275658031 -6535633 - AluSc SINE Alu -37 272 197 358 241 80 64 chr1 275658226 275658312 -6535352 + MARNA DNA Mariner 145 228 -358 1528 191 48 0 chr1 275658312 275658605 -6535059 - AluJo SINE Alu -5 307 1 358 241 80 64 chr1 275658605 275658705 -6534959 + MARNA DNA Mariner 228 334 -252 1826 167 0 26 chr1 275659130 275659302 -6534362 - AluJb SINE Alu -4 308 146 2306 99 0 0 chr1 275659302 275659595 -6534069 - AluY SINE Alu -17 294 2 1826 167 0 26 chr1 275659595 275659733 -6533931 - AluJb SINE Alu -166 146 6 1267 186 89 19 chr1 275660243 275660501 -6533163 + AluJo SINE Alu 3 278 -34 181 0 33 33 chr1 275660507 275660537 -6533127 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 261 164 41 0 chr1 275660683 275660756 -6532908 + (TA)n Simple_repeat Simple_repeat 2 77 0 272 281 55 0 chr1 275660852 275661016 -6532648 + (TA)n Simple_repeat Simple_repeat 1 173 0 2104 134 3 6 chr1 275661428 275661741 -6531923 - AluSx SINE Alu 0 312 1 194 216 0 0 chr1 275662176 275662213 -6531451 + MER5B DNA MER1_type 132 168 -10 399 323 32 0 chr1 275662219 275662374 -6531290 - MIR SINE MIR -49 213 54 236 352 50 33 chr1 275662416 275662578 -6531086 - MER5A DNA MER1_type -1 188 15 211 335 61 61 chr1 275662874 275663104 -6530560 + L2 LINE L2 3043 3272 0 356 335 95 6 chr1 275663236 275663415 -6530249 - MIR3 SINE MIR -3 205 11 218 383 47 0 chr1 275663549 275663656 -6530008 - L2 LINE L2 -24 3289 3178 6204 48 4 1 chr1 275664324 275665069 -6528595 - L1PA7 LINE L1 -6 6148 5402 296 210 0 0 chr1 275666005 275666067 -6527597 - L1MB3 LINE L1 -31 6152 6091 2981 130 13 21 chr1 275666087 275666565 -6527099 - L1MA4 LINE L1 -300 6000 5527 512 225 108 144 chr1 275667072 275667627 -6526037 + MER34 LTR ERV1 3 537 -5 675 255 153 81 chr1 275668452 275669105 -6524559 + L1ME4a LINE L1 5325 6025 -96 210 306 122 50 chr1 275669333 275669513 -6524151 - MIR SINE MIR -43 219 27 2185 122 0 0 chr1 275669780 275670074 -6523590 + AluSq SINE Alu 1 294 -19 189 0 0 0 chr1 275671746 275671767 -6521897 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 999 129 12 6 chr1 275671937 275672100 -6521564 + MER89 LTR ERV1 395 558 -1 209 32 0 32 chr1 275672290 275672321 -6521343 + (GGGAA)n Simple_repeat Simple_repeat 5 34 0 604 310 33 25 chr1 275672990 275673232 -6520432 - MIR SINE MIR 0 262 19 209 182 0 0 chr1 275673254 275673287 -6520377 + polypurine Low_complexity Low_complexity 6 38 0 495 268 68 36 chr1 275673403 275673653 -6520011 + L1MC4 LINE L1 6756 7013 -1029 22 35 0 0 chr1 275676198 275676227 -6517437 + AT_rich Low_complexity Low_complexity 1 29 0 2832 186 41 4 chr1 275676343 275676882 -6516782 + MER89 LTR ERV1 1 559 0 2562 91 9 0 chr1 275677233 275677583 -6516081 - THE1A LTR MaLR -2 353 1 278 306 20 41 chr1 275677699 275677797 -6515867 - MIR SINE MIR -160 102 7 2668 95 18 11 chr1 275679069 275679449 -6514215 - L1PA11 LINE L1 0 6174 5792 3094 131 34 29 chr1 275681027 275681204 -6512460 - MER4B LTR ERV1 0 779 604 2370 64 0 0 chr1 275681204 275681509 -6512155 + AluY SINE Alu 1 305 0 3094 131 34 29 chr1 275681509 275681935 -6511729 - MER4B LTR ERV1 -175 604 1 715 140 0 52 chr1 275682180 275682316 -6511348 + MLT1A1 LTR MaLR 1 129 -236 952 219 0 0 chr1 275682326 275682495 -6511169 + FAM SINE Alu 4 172 -13 1289 181 0 0 chr1 275682495 275682711 -6510953 + MLT1A1 LTR MaLR 150 365 0 417 39 0 0 chr1 275682858 275682909 -6510755 + (CA)n Simple_repeat Simple_repeat 2 52 0 214 259 18 125 chr1 275683306 275683321 -6510343 + L2 LINE L2 3210 3225 -88 2147 116 16 13 chr1 275683321 275683632 -6510032 - AluSp SINE Alu -1 312 1 214 259 18 125 chr1 275683632 275683728 -6509936 + L2 LINE L2 3225 3309 -4 2608 98 19 6 chr1 275683762 275684121 -6509543 + THE1B LTR MaLR 1 364 0 4258 193 48 12 chr1 275684385 275686072 -6507592 - L1MA7 LINE L1 -12 6483 4739 448 207 78 0 chr1 275686061 275686177 -6507487 - L1 LINE L1 -799 5347 5223 * 1311 134 78 16 chr1 275686170 275686476 -6507188 - L1MA7 LINE L1 -1600 4750 4426 920 207 79 92 chr1 275686532 275686993 -6506671 + MER66A LTR ERV1 97 475 -3 7764 230 53 38 chr1 275686993 275689916 -6503748 - L1MA7 LINE L1 -1921 4429 1771 2408 95 0 3 chr1 275689916 275690220 -6503444 - AluSq SINE Alu -10 303 1 7764 230 53 38 chr1 275690220 275691988 -6501676 - L1MA7 LINE L1 -4579 1771 31 646 269 25 30 chr1 275692077 275692278 -6501386 + MIR SINE MIR 63 262 0 411 197 401 0 chr1 275692508 275692640 -6501024 - MER5A DNA MER1_type 0 189 5 28 29 0 0 chr1 275692802 275692837 -6500827 + AT_rich Low_complexity Low_complexity 1 35 0 266 275 180 12 chr1 275692946 275693190 -6500474 - L1ME4a LINE L1 -73 6048 5764 26 64 0 0 chr1 275693578 275693625 -6500039 + AT_rich Low_complexity Low_complexity 1 47 0 749 164 0 0 chr1 275694286 275694402 -6499262 + FLAM_C SINE Alu 1 116 -27 21 57 0 0 chr1 275694402 275694437 -6499227 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr1 275694512 275694550 -6499114 + AT_rich Low_complexity Low_complexity 1 38 0 224 303 53 53 chr1 275694647 275694779 -6498885 - MIR SINE MIR -105 157 26 297 318 52 32 chr1 275695199 275695353 -6498311 + L2 LINE L2 2124 2280 -1034 1154 240 70 141 chr1 275695363 275695831 -6497833 + L1MEc LINE L1 233 678 -5718 527 95 0 0 chr1 275695831 275695905 -6497759 + FAM SINE Alu 104 177 -8 1154 240 70 141 chr1 275695905 275696322 -6497342 + L1MEc LINE L1 678 1123 -5273 253 194 20 51 chr1 275696374 275696472 -6497192 + L1MEc LINE L1 1182 1276 -4939 930 266 33 22 chr1 275696491 275696859 -6496805 + L1MEc LINE L1 2465 2836 -3379 2208 135 3 0 chr1 275696868 275697179 -6496485 + AluSx SINE Alu 1 312 0 540 257 23 55 chr1 275697207 275697592 -6496072 + L1MEc LINE L1 3128 3500 -2715 738 291 11 0 chr1 275698293 275698561 -6495103 + L1MEc LINE L1 3477 3747 -2468 194 255 0 0 chr1 275698621 275698668 -6494996 - L2 LINE L2 0 3313 3267 366 138 0 15 chr1 275698963 275699028 -6494636 - MADE1 DNA Mariner 0 80 17 247 227 350 0 chr1 275699158 275699255 -6494409 + L2 LINE L2 3181 3311 -2 494 290 68 83 chr1 275700100 275700438 -6493226 + HAL1 LINE L1 831 1163 -1344 1636 160 65 17 chr1 275700441 275700526 -6493138 + MER93b LTR ERV1 1 80 -293 207 0 0 0 chr1 275700526 275700549 -6493115 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1636 160 65 17 chr1 275700549 275700759 -6492905 + MER93b LTR ERV1 80 318 -55 1609 246 38 68 chr1 275700759 275701390 -6492274 - LTR9 LTR ERV1 0 612 1 1636 160 65 17 chr1 275701390 275701449 -6492215 + MER93b LTR ERV1 318 373 0 309 363 12 12 chr1 275701467 275701627 -6492037 + HAL1 LINE L1 1173 1332 -1175 494 279 151 16 chr1 275701647 275701959 -6491705 + L1MC/D LINE L1 5455 5808 -2000 206 174 11 174 chr1 275702353 275702445 -6491219 - MIR3 SINE MIR -9 199 123 334 341 53 35 chr1 275703690 275703860 -6489804 - L3 LINE CR1 -17 1560 1388 206 250 0 53 chr1 275703909 275703985 -6489679 + CT-rich Low_complexity Low_complexity 75 146 0 1481 68 9 36 chr1 275704302 275704524 -6489140 - L1PA7 LINE L1 0 6154 5939 21 0 0 0 chr1 275704609 275704630 -6489034 + AT_rich Low_complexity Low_complexity 1 21 0 7136 43 2 28 chr1 275704756 275706414 -6487250 + L1PA5 LINE L1 4521 6154 0 3117 128 133 7 chr1 275706832 275707410 -6486254 + MER39B LTR ERV1 3 653 0 180 0 0 0 chr1 275710082 275710102 -6483562 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 4383 164 26 6 chr1 275710105 275710978 -6482686 + L1MB4 LINE L1 5290 6180 0 1975 162 13 0 chr1 275710994 275711296 -6482368 + AluSx SINE Alu 3 308 -4 249 139 0 0 chr1 275712434 275712477 -6481187 + U2 snRNA snRNA 1 43 -145 1103 252 90 40 chr1 275712771 275713040 -6480624 - L1MC4 LINE L1 -1139 6903 6604 6219 84 25 16 chr1 275713040 275713999 -6479665 + L1PA10 LINE L1 5199 6166 -2 1103 252 90 40 chr1 275713999 275714153 -6479511 - L1MC4 LINE L1 -1438 6604 6459 1027 326 106 36 chr1 275714292 275715074 -6478590 - L2 LINE L2 -619 2695 1859 450 148 23 0 chr1 275715655 275715743 -6477921 - L1MA5 LINE L1 -2 6298 6209 223 304 0 0 chr1 275715840 275715896 -6477768 + CT-rich Low_complexity Low_complexity 3 58 0 275 311 47 14 chr1 275717231 275717379 -6476285 + L1MC4 LINE L1 5609 5761 -2047 * 604 282 64 15 chr1 275717373 275717639 -6476025 + L1MC4 LINE L1 6826 7104 -938 264 65 0 43 chr1 275717695 275717741 -6475923 + LTR14B LTR ERVK 3 46 -562 * 1860 80 138 39 chr1 275717729 275718091 -6475573 + LTR14B LTR ERVK 211 608 0 1328 209 13 87 chr1 275718261 275718724 -6474940 - MLT1B LTR MaLR 0 467 1 478 306 0 0 chr1 275718751 275718895 -6474769 + L1MC4 LINE L1 7308 7451 -591 418 288 148 38 chr1 275718919 275719350 -6474314 + L1MC4 LINE L1 7309 7888 -154 473 293 82 18 chr1 275719550 275719881 -6473783 + L1M4 LINE L1 4487 4838 -1308 330 181 14 42 chr1 275720041 275720185 -6473479 + (TTATA)n Simple_repeat Simple_repeat 5 144 0 804 334 206 39 chr1 275720198 275721137 -6472527 - L2 LINE L2 -1473 1841 747 1859 91 4 4 chr1 275721146 275721413 -6472251 + AluSg1 SINE Alu 39 305 0 502 100 0 0 chr1 275721433 275721503 -6472161 + AluSc SINE Alu 226 295 -14 180 371 0 0 chr1 275721505 275721575 -6472089 - L2 LINE L2 -2582 732 663 23 0 0 0 chr1 275721670 275721693 -6471971 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr1 275722440 275722470 -6471194 + AT_rich Low_complexity Low_complexity 1 30 0 332 106 0 0 chr1 275722470 275722517 -6471147 - Alu SINE Alu -18 282 236 1426 122 0 5 chr1 275722519 275722716 -6470948 - AluSg/x SINE Alu -39 273 78 2369 67 3 13 chr1 275723345 275723643 -6470021 + AluY SINE Alu 1 295 -16 3839 145 5 0 chr1 275724281 275724853 -6468811 + L1PA16 LINE L1 5583 6157 -9 2214 89 10 7 chr1 275725353 275725644 -6468020 + AluSx SINE Alu 1 292 -20 307 240 42 42 chr1 275725644 275725733 -6467931 + L1MC4 LINE L1 6612 6703 -1339 364 289 0 0 chr1 275725737 275725827 -6467837 + L1MC4 LINE L1 6614 6703 -1339 288 200 0 0 chr1 275725830 275725895 -6467769 + (TA)n Simple_repeat Simple_repeat 1 65 0 364 289 0 0 chr1 275725899 275725989 -6467675 + L1MC4 LINE L1 6614 6703 -1339 392 230 0 8 chr1 275725992 275726072 -6467592 + (TA)n Simple_repeat Simple_repeat 2 82 -44 2233 83 10 7 chr1 275726072 275726362 -6467302 + AluSx SINE Alu 1 291 -21 392 230 0 8 chr1 275726362 275726407 -6467257 + (TA)n Simple_repeat Simple_repeat 82 126 0 350 250 0 22 chr1 275726411 275726503 -6467161 + L1MC4 LINE L1 6614 6703 -1339 221 171 0 71 chr1 275726506 275726576 -6467088 + (TA)n Simple_repeat Simple_repeat 2 66 0 2109 124 7 0 chr1 275727139 275727430 -6466234 + AluSq SINE Alu 1 293 -20 226 147 0 0 chr1 275727433 275727467 -6466197 - MER116 DNA Mariner -46 34 1 503 161 23 0 chr1 275727558 275727645 -6466019 - MER20 DNA MER1_type -13 206 118 1441 269 206 37 chr1 275727747 275728032 -6465632 + L2 LINE L2 1692 1928 -1386 2335 89 0 22 chr1 275728032 275728346 -6465318 - AluSc SINE Alu 0 309 3 1441 269 206 37 chr1 275728346 275728837 -6464827 + L2 LINE L2 1928 2599 -715 195 129 0 0 chr1 275729137 275729168 -6464496 + (T)n Simple_repeat Simple_repeat 1 31 0 281 347 94 12 chr1 275729955 275730125 -6463539 + MIR SINE MIR 6 189 -73 346 330 86 26 chr1 275730228 275730461 -6463203 + L3 LINE CR1 1323 1569 -8 204 333 0 15 chr1 275730551 275730617 -6463047 + L2 LINE L2 3205 3269 -3 1887 159 20 60 chr1 275731043 275731262 -6462402 + MER1B DNA MER1_type 1 202 -2508 2082 120 3 25 chr1 275731262 275731578 -6462086 + AluSp SINE Alu 1 309 -4 1887 159 20 60 chr1 275731578 275731709 -6461955 + MER1B DNA MER1_type 202 337 0 241 339 118 0 chr1 275731903 275732030 -6461634 - MIR SINE MIR -13 249 108 1231 317 63 18 chr1 275732281 275732943 -6460721 + L2 LINE L2 2192 2883 -431 573 250 99 74 chr1 275732999 275733323 -6460341 + L2 LINE L2 2941 3272 0 1763 117 12 12 chr1 275734843 275735099 -6458565 - AluSx SINE Alu -13 299 44 275 214 18 0 chr1 275735229 275735285 -6458379 + L3 LINE CR1 1502 1558 -19 394 296 56 108 chr1 275735394 275735772 -6457892 - L2 LINE L2 -19 3253 2896 2057 119 44 3 chr1 275736253 275736546 -6457118 - AluSx SINE Alu -7 305 1 889 189 34 39 chr1 275736648 275736854 -6456810 + MER20 DNA MER1_type 2 206 -13 259 125 11 171 chr1 275736945 275736982 -6456682 + MER116 DNA Mariner 1 18 -62 2279 114 0 0 chr1 275736982 275737280 -6456384 - AluSp SINE Alu -15 298 1 259 125 11 171 chr1 275737280 275737330 -6456334 + MER116 DNA Mariner 18 74 -6 2673 91 30 30 chr1 275738379 275738743 -6454921 + THE1B LTR MaLR 1 364 0 2146 100 3 56 chr1 275738936 275739256 -6454408 - AluSg SINE Alu -7 303 1 26 0 0 0 chr1 275739363 275739389 -6454275 + AT_rich Low_complexity Low_complexity 1 26 0 2772 162 17 2 chr1 275739718 275740138 -6453526 + MSTB LTR MaLR 1 426 0 2122 111 4 0 chr1 275740166 275740480 -6453184 + AluSg SINE Alu 1 315 0 225 290 43 0 chr1 275740529 275740598 -6453066 + MIR SINE MIR 50 121 -87 3570 82 81 6 chr1 275740932 275741453 -6452211 - LTR9B LTR ERV1 -84 560 1 1097 152 0 0 chr1 275741453 275741617 -6452047 - HUERS-P3 LTR ERV1 -1 8918 8755 698 89 134 9 chr1 275742067 275742179 -6451485 - MER85 DNA T2_type -13 126 1 212 297 34 51 chr1 275742484 275742602 -6451062 - L3 LINE CR1 -1 1576 1461 197 0 71 0 chr1 275742602 275742630 -6451034 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2448 50 0 0 chr1 275742632 275742914 -6450750 - AluY SINE Alu -29 282 1 566 151 76 8 chr1 275743037 275743156 -6450508 - L1MD1 LINE L1 -2 6240 6114 3259 133 50 31 chr1 275743157 275743737 -6449927 - LTR59 LTR ERV1 -6 591 1 561 180 58 105 chr1 275743739 275743911 -6449753 - L1MD2 LINE L1 -133 6226 6063 2391 194 43 12 chr1 275743912 275744418 -6449246 - L1MD2 LINE L1 -409 5950 5429 241 294 264 26 chr1 275744431 275744696 -6448968 - L3 LINE CR1 -118 1459 1132 251 342 54 0 chr1 275744717 275744828 -6448836 - L2 LINE L2 -18 3295 3179 429 365 56 28 chr1 275745915 275746274 -6447390 + L1MC/D LINE L1 4887 5255 -891 1164 268 68 29 chr1 275746276 275746765 -6446899 + L1MC/D LINE L1 5282 5789 -2019 2470 57 14 3 chr1 275746892 275747189 -6446475 - AluY SINE Alu -11 300 1 23 54 0 0 chr1 275747520 275747557 -6446107 + AT_rich Low_complexity Low_complexity 1 37 0 388 227 16 47 chr1 275747618 275747746 -6445918 + L1MC5 LINE L1 7802 7925 -36 509 239 239 68 chr1 275748270 275748609 -6445055 - L2 LINE L2 -1 3312 2916 2846 178 8 4 chr1 275748620 275749098 -6444566 + MER66B LTR ERV1 7 486 0 2450 272 97 51 chr1 275749100 275750062 -6443602 - L2 LINE L2 -377 2937 1932 2099 98 0 90 chr1 275750761 275751096 -6442568 - AluSg SINE Alu -5 305 1 642 322 67 0 chr1 275751478 275751717 -6441947 - MIR SINE MIR 0 262 8 2344 79 7 10 chr1 275752280 275752583 -6441081 + AluSc SINE Alu 1 302 -7 283 266 54 98 chr1 275752749 275752933 -6440731 - MLT1I LTR MaLR -144 265 90 1941 168 0 7 chr1 275754222 275754532 -6439132 - AluJo SINE Alu -4 308 1 317 277 12 0 chr1 275754846 275754929 -6438735 + MIR SINE MIR 65 148 -114 549 165 0 31 chr1 275754946 275755043 -6438621 + FLAM_A SINE Alu 45 138 -4 351 275 64 9 chr1 275755130 275755239 -6438425 + L2 LINE L2 3194 3308 -5 2158 120 0 0 chr1 275756233 275756524 -6437140 + AluSx SINE Alu 1 291 -21 6713 144 54 32 chr1 275756526 275757023 -6436641 - Tigger3b DNA MER2_type -1797 1231 746 2365 93 0 3 chr1 275757023 275757325 -6436339 - AluY SINE Alu -10 301 1 6713 144 54 32 chr1 275757325 275758032 -6435632 - Tigger3b DNA MER2_type -2282 746 1 1315 256 70 33 chr1 275758140 275758570 -6435094 + MLT1J1 LTR MaLR 1 446 0 839 134 0 49 chr1 275760784 275760926 -6432738 - FLAM_C SINE Alu -6 137 3 1857 192 18 47 chr1 275761548 275761933 -6431731 - MLT1A2 LTR MaLR 0 374 1 935 211 32 5 chr1 275762442 275762627 -6431037 - L1MB3 LINE L1 -7 6176 5987 2036 291 104 14 chr1 275764918 275765944 -6427720 - L2 LINE L2 0 3313 2198 2061 103 0 0 chr1 275765988 275766259 -6427405 - AluY SINE Alu -2 309 39 1148 116 17 12 chr1 275766259 275766432 -6427232 - L1PA10 LINE L1 -5 6163 5990 3305 200 20 20 chr1 275766525 275767171 -6426493 - MER82 DNA MER2_type -1 652 7 764 261 56 21 chr1 275767379 275767666 -6425998 - L3b LINE CR1 -140 1443 1147 320 297 103 7 chr1 275768400 275768545 -6425119 + MIR3 SINE MIR 41 199 -9 1754 133 34 0 chr1 275768799 275769062 -6424602 + AluSx SINE Alu 1 272 -40 22 0 0 0 chr1 275769695 275769717 -6423947 + GC_rich Low_complexity Low_complexity 1 22 0 239 251 16 53 chr1 275769990 275770177 -6423487 + (CGGG)n Simple_repeat Simple_repeat 1 180 0 * 271 282 9 27 chr1 275770155 275770222 -6423442 + (CGGGG)n Simple_repeat Simple_repeat 2 68 -41 201 74 0 0 chr1 275770222 275770249 -6423415 + (CGGGGG)n Simple_repeat Simple_repeat 4 30 0 271 282 9 27 chr1 275770249 275770291 -6423373 + (CGGGG)n Simple_repeat Simple_repeat 68 109 0 206 143 0 24 chr1 275770419 275770461 -6423203 + (CGGGGG)n Simple_repeat Simple_repeat 3 43 0 424 300 0 10 chr1 275770564 275770664 -6423000 - MIR SINE MIR -162 100 2 459 317 119 33 chr1 275770698 275771117 -6422547 - L1MB3 LINE L1 -2058 5750 5296 1181 182 0 0 chr1 275771145 275771337 -6422327 - AluJo SINE Alu -32 280 89 2456 58 3 7 chr1 275771675 275772013 -6421651 + AluY SINE Alu 2 338 0 292 322 126 35 chr1 275772022 275772221 -6421443 + MIR SINE MIR 29 245 -17 475 58 14 0 chr1 275775758 275775827 -6417837 + MADE1 DNA Mariner 11 80 0 413 346 128 12 chr1 275775846 275776167 -6417497 + L2 LINE L2 2286 2643 -671 268 224 0 40 chr1 275776312 275776388 -6417276 - MIR SINE MIR -130 132 60 1225 121 0 11 chr1 275776761 275776928 -6416736 - AluSg/x SINE Alu -13 299 133 2096 101 61 3 chr1 275776928 275777224 -6416440 - AluSp SINE Alu 0 313 1 1225 121 0 11 chr1 275777224 275777238 -6416426 - AluSg/x SINE Alu -179 133 120 185 286 0 0 chr1 275777569 275777618 -6416046 + L2 LINE L2 3197 3245 -27 1048 217 81 64 chr1 275777624 275778043 -6415621 - MLT1J1 LTR MaLR -6 440 15 460 215 54 8 chr1 275781037 275781167 -6412497 + L1ME3A LINE L1 6014 6149 -21 29 0 0 0 chr1 275781699 275781728 -6411936 + AT_rich Low_complexity Low_complexity 1 29 0 250 135 54 14 chr1 275783107 275783181 -6410483 + (TA)n Simple_repeat Simple_repeat 2 78 0 282 109 59 20 chr1 275783181 275783282 -6410382 + (TTATA)n Simple_repeat Simple_repeat 1 105 0 1331 217 0 17 chr1 275783597 275783887 -6409777 + MLT1A1 LTR MaLR 1 285 -80 578 175 0 0 chr1 275783895 275783998 -6409666 - AluSg/x SINE Alu -3 306 204 1211 123 0 0 chr1 275784098 275784261 -6409403 + AluSq SINE Alu 140 302 -11 1649 211 16 16 chr1 275784362 275784727 -6408937 - MLT1A1 LTR MaLR 0 365 1 573 88 0 0 chr1 275785778 275785858 -6407806 + (TCCCC)n Simple_repeat Simple_repeat 4 83 0 264 59 0 0 chr1 275786578 275786612 -6407052 + (T)n Simple_repeat Simple_repeat 1 34 0 894 262 139 9 chr1 275788449 275788888 -6404776 + MLT1J LTR MaLR 1 496 -15 209 250 40 66 chr1 275788901 275788977 -6404687 - MIR SINE MIR -115 93 20 408 307 145 6 chr1 275789269 275789448 -6404216 + MIR SINE MIR 46 249 -13 330 282 27 36 chr1 275789483 275789593 -6404071 - L2 LINE L2 -5 3308 3200 2392 97 0 7 chr1 275789673 275789983 -6403681 - AluSg SINE Alu -2 308 1 373 233 35 9 chr1 275790010 275790126 -6403538 - L1ME4a LINE L1 -26 6095 5977 323 266 119 0 chr1 275790363 275790472 -6403192 + L2 LINE L2 3017 3138 -175 384 317 93 99 chr1 275790586 275790908 -6402756 - L1ME4a LINE L1 -407 5714 5395 1865 242 46 8 chr1 275791406 275791910 -6401754 - MLT1G LTR MaLR 0 590 68 361 228 7 59 chr1 275792647 275792783 -6400881 + MER113 DNA MER1_type? 49 177 -344 433 267 37 0 chr1 275792846 275793007 -6400657 + MER113 DNA MER1_type? 326 492 -29 180 0 0 0 chr1 275793511 275793531 -6400133 + (TA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr1 275793550 275793579 -6400085 + AT_rich Low_complexity Low_complexity 1 29 0 624 279 68 40 chr1 275793750 275794072 -6399592 + L2 LINE L2 2169 2499 -815 351 113 0 0 chr1 275794376 275794429 -6399235 + (TG)n Simple_repeat Simple_repeat 2 54 0 2326 94 3 0 chr1 275794499 275794796 -6398868 + AluSx SINE Alu 1 298 -14 2187 165 63 0 chr1 275794844 275795243 -6398421 + MSTB LTR MaLR 1 424 -2 265 251 118 53 chr1 275795349 275795536 -6398128 + MLT1L LTR MaLR 168 366 -249 335 264 170 0 chr1 275795581 275795740 -6397924 + MLT1L LTR MaLR 430 615 0 25 51 0 0 chr1 275796482 275796521 -6397143 + AT_rich Low_complexity Low_complexity 1 39 0 1709 187 0 3 chr1 275796595 275796884 -6396780 + AluJb SINE Alu 1 288 -24 190 207 58 58 chr1 275796999 275797086 -6396578 + L3b LINE CR1 1311 1397 -186 638 98 0 0 chr1 275797137 275797229 -6396435 + L1M1 LINE L1 5686 5777 -523 2392 79 0 26 chr1 275799802 275800106 -6393558 + AluSq SINE Alu 1 296 -17 2051 153 0 0 chr1 275800518 275800812 -6392852 + AluSx SINE Alu 1 294 -18 1250 135 5 16 chr1 275800814 275801006 -6392658 + AluSx SINE Alu 1 190 -122 183 156 0 0 chr1 275802060 275802092 -6391572 + (CA)n Simple_repeat Simple_repeat 2 33 0 2422 61 0 0 chr1 275802241 275802535 -6391129 + AluY SINE Alu 1 294 -17 2432 239 106 15 chr1 275802700 275803616 -6390048 + L1MC3 LINE L1 6780 7778 -7 2295 73 13 30 chr1 275803808 275804110 -6389554 + AluY SINE Alu 1 297 -14 1944 155 0 29 chr1 275804536 275804852 -6388812 - AluJo SINE Alu -5 307 1 251 285 132 101 chr1 275805014 275805242 -6388422 - L2 LINE L2 -37 3235 3001 246 300 12 12 chr1 275805456 275805536 -6388128 + L2 LINE L2 3232 3311 -2 869 52 30 30 chr1 275806142 275806277 -6387387 + L1PA14 LINE L1 6025 6159 -2 1534 272 62 46 chr1 275806686 275806863 -6386801 - L1ME3 LINE L1 -17 6145 5972 249 33 0 0 chr1 275806863 275806893 -6386771 + (TG)n Simple_repeat Simple_repeat 1 30 0 1534 272 62 46 chr1 275806893 275806910 -6386754 - L1ME3 LINE L1 -190 5972 5957 1973 127 0 4 chr1 275806910 275807185 -6386479 - AluSx SINE Alu -38 274 1 1534 272 62 46 chr1 275807185 275807923 -6385741 - L1ME3 LINE L1 -205 5957 5169 186 43 0 0 chr1 275807923 275807946 -6385718 + (TA)n Simple_repeat Simple_repeat 2 24 0 1534 272 62 46 chr1 275807946 275808570 -6385094 - L1ME3 LINE L1 -993 5169 4557 914 292 73 22 chr1 275808589 275809188 -6384476 - L1ME3 LINE L1 -1712 4434 3805 255 259 17 0 chr1 275809480 275809538 -6384126 + L2 LINE L2 3214 3272 0 236 271 0 0 chr1 275811620 275811668 -6381996 - MIR SINE MIR -16 246 199 254 297 93 63 chr1 275811700 275812033 -6381631 + MLT1I LTR MaLR 38 380 -29 21 0 0 0 chr1 275813272 275813293 -6380371 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 275813323 275813346 -6380318 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr1 275815122 275815167 -6378497 + GC_rich Low_complexity Low_complexity 1 45 0 1295 145 110 12 chr1 275816437 275816692 -6376972 + AluJb SINE Alu 1 280 -32 2038 89 46 0 chr1 275816743 275817024 -6376640 - AluSx SINE Alu -2 310 17 2191 117 0 16 chr1 275817428 275817737 -6375927 - AluSx SINE Alu -8 304 1 195 250 21 0 chr1 275818308 275818356 -6375308 + L2 LINE L2 3263 3311 -2 352 281 68 57 chr1 275818936 275819117 -6374547 - MIR3 SINE MIR -65 143 10 348 328 95 17 chr1 275819663 275819895 -6373769 - MIR SINE MIR -12 250 1 599 48 0 24 chr1 275820080 275820164 -6373500 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 2019 125 0 76 chr1 275820171 275820499 -6373165 - AluSq SINE Alu -10 303 1 195 348 11 43 chr1 275820514 275820606 -6373058 + MIR SINE MIR 33 121 -87 317 299 23 0 chr1 275821897 275821984 -6371680 - L1MC4 LINE L1 -1341 6701 6613 347 281 22 0 chr1 275821985 275822074 -6371590 - L1MC4 LINE L1 -1339 6703 6613 483 261 0 0 chr1 275822077 275822238 -6371426 + (TA)n Simple_repeat Simple_repeat 1 161 0 347 289 0 0 chr1 275822239 275822329 -6371335 - L1MC4 LINE L1 -1339 6703 6614 303 322 0 0 chr1 275822287 275822377 -6371287 + L1MC4 LINE L1 6614 6703 -1339 * 354 250 0 22 chr1 275822345 275822437 -6371227 - L1MC4 LINE L1 -1339 6703 6614 354 250 0 22 chr1 275822441 275822533 -6371131 - L1MC4 LINE L1 -1339 6703 6614 392 230 0 8 chr1 275822537 275822582 -6371082 + (TA)n Simple_repeat Simple_repeat 2 46 -80 2224 83 10 7 chr1 275822582 275822872 -6370792 - AluSx SINE Alu -21 291 1 392 230 0 8 chr1 275822872 275822952 -6370712 + (TA)n Simple_repeat Simple_repeat 46 126 0 368 289 0 0 chr1 275822955 275823045 -6370619 - L1MC4 LINE L1 -1339 6703 6614 338 256 0 22 chr1 275823071 275823161 -6370503 - L1MC4 LINE L1 -1341 6701 6614 368 289 0 0 chr1 275823165 275823255 -6370409 - L1MC4 LINE L1 -1339 6703 6614 312 240 42 42 chr1 275823259 275823348 -6370316 - L1MC4 LINE L1 -1339 6703 6612 2209 89 10 7 chr1 275823348 275823639 -6370025 - AluSx SINE Alu -20 292 1 3554 145 5 0 chr1 275824139 275824711 -6368953 - L1PA16 LINE L1 -9 6157 5583 2385 67 3 13 chr1 275825349 275825647 -6368017 - AluY SINE Alu -16 295 1 1767 110 0 4 chr1 275826276 275826512 -6367152 + AluSq SINE Alu 78 312 -1 184 271 0 21 chr1 275826637 275826685 -6366979 + MIR3 SINE MIR 152 198 -10 2148 127 0 3 chr1 275827096 275827396 -6366268 + AluSx SINE Alu 1 299 -13 238 285 98 32 chr1 275828519 275828642 -6365022 + MIR3 SINE MIR 5 135 -73 395 291 126 27 chr1 275828929 275829152 -6364512 + L1ME4a LINE L1 5652 5896 -225 285 289 41 16 chr1 275829197 275829318 -6364346 + L1ME2 LINE L1 39 162 -6234 3829 231 32 42 chr1 275829318 275829890 -6363774 + L1ME2 LINE L1 4212 4788 -1445 2167 126 0 28 chr1 275829890 275830208 -6363456 + AluSc SINE Alu 1 309 0 3829 231 32 42 chr1 275830208 275831199 -6362465 + L1ME2 LINE L1 4788 5755 -478 44294 45 2 1 chr1 275831202 275837351 -6356313 + L1PA4 LINE L1 1 6153 -2 1866 211 22 1 chr1 275837473 275837944 -6355720 + L1MC2 LINE L1 4943 5420 -745 288 194 54 11 chr1 275837958 275838051 -6355613 + (TATG)n Simple_repeat Simple_repeat 4 100 0 276 203 47 0 chr1 275838052 275838116 -6355548 - L1M4 LINE L1 -1825 4321 4255 5245 147 27 31 chr1 275838140 275839052 -6354612 + L1MC2 LINE L1 5435 6343 -1 1223 219 56 50 chr1 275839156 275839494 -6354170 + L1ME2 LINE L1 5885 6224 -9 213 258 0 0 chr1 275839542 275839608 -6354056 + GA-rich Low_complexity Low_complexity 4 69 0 243 233 117 50 chr1 275839649 275839769 -6353895 + L1ME4a LINE L1 5991 6118 -3 208 333 0 0 chr1 275840965 275841028 -6352636 - MER5A DNA MER1_type -87 102 40 213 303 30 0 chr1 275841453 275841552 -6352112 + (CATATA)n Simple_repeat Simple_repeat 5 106 0 1277 82 5 54 chr1 275842359 275842543 -6351121 + AluSq SINE Alu 1 175 -138 805 152 0 69 chr1 275842646 275842791 -6350873 + AluSc SINE Alu 160 294 -15 280 286 75 23 chr1 275843082 275843215 -6350449 + MIR SINE MIR 14 153 -109 234 0 0 0 chr1 275844227 275844253 -6349411 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 204 250 12 48 chr1 275846477 275846561 -6347103 + L2 LINE L2 3172 3252 -61 204 323 0 0 chr1 275847413 275847478 -6346186 + L2 LINE L2 2994 3058 -214 335 348 59 36 chr1 275847633 275847653 -6346011 + L2 LINE L2 2718 2736 -578 2017 134 7 3 chr1 275847653 275847959 -6345705 - AluSx SINE Alu -5 307 1 335 348 59 36 chr1 275847959 275848159 -6345505 + L2 LINE L2 2736 2943 -371 1706 180 0 0 chr1 275848733 275849011 -6344653 + AluJb SINE Alu 1 278 -34 2050 184 11 6 chr1 275849236 275849595 -6344069 + MLT1A1 LTR MaLR 5 365 0 2138 111 3 10 chr1 275850247 275850545 -6343119 + AluSx SINE Alu 1 296 -16 839 199 106 21 chr1 275852120 275852350 -6341314 + MER115 DNA AcHobo 445 4031 0 1036 196 0 16 chr1 275852471 275852665 -6340999 - MER3 DNA MER1_type -18 191 1 588 284 33 6 chr1 275852891 275853074 -6340590 + Charlie8 DNA MER1_type 93 280 -2137 13310 41 8 0 chr1 275853256 275854810 -6338854 + HERVK11D LTR ERVK 5025 6591 -1161 8544 26 0 0 chr1 275854800 275855770 -6337894 + HERVK11D LTR ERVK 6783 7752 0 * 7891 34 29 0 chr1 275855771 275856642 -6337022 + MER11D LTR ERVK 2 897 0 242 125 21 0 chr1 275856809 275856857 -6336807 + (CA)n Simple_repeat Simple_repeat 2 50 0 2038 118 7 3 chr1 275857057 275857344 -6336320 + AluSx SINE Alu 1 288 -24 256 161 247 25 chr1 275857344 275857425 -6336239 + L2 LINE L2 3211 3309 -4 183 241 74 0 chr1 275857516 275857570 -6336094 - L2 LINE L2 0 3272 3215 2637 141 40 2 chr1 275857773 275858359 -6335305 - L1PA16 LINE L1 -494 5672 5065 2884 117 95 4 chr1 275858364 275858818 -6334846 + L1PA16 LINE L1 5672 6166 0 3816 288 160 15 chr1 275858832 275860664 -6333000 + L2 LINE L2 357 2454 -860 3009 207 56 23 chr1 275860667 275861362 -6332302 + L1MB5 LINE L1 5450 6167 -7 1424 259 50 81 chr1 275861371 275861846 -6331818 + L2 LINE L2 2455 2905 -408 2188 92 0 11 chr1 275861846 275862129 -6331535 + AluSg1 SINE Alu 1 280 -29 1424 259 50 81 chr1 275862129 275862519 -6331145 + L2 LINE L2 2905 3305 -8 2728 121 79 30 chr1 275862632 275862810 -6330854 + L1MA7 LINE L1 5762 5930 -361 2118 128 0 0 chr1 275862810 275863106 -6330558 + AluSx SINE Alu 1 296 -16 2728 121 79 30 chr1 275863106 275863432 -6330232 + L1MA7 LINE L1 5930 6291 0 22 0 0 0 chr1 275863432 275863454 -6330210 + AT_rich Low_complexity Low_complexity 1 22 0 393 75 0 0 chr1 275864872 275864925 -6328739 + (CA)n Simple_repeat Simple_repeat 2 54 0 663 279 119 9 chr1 275866516 275866735 -6326929 - MIR SINE MIR -19 243 1 830 246 145 49 chr1 275867033 275867420 -6326244 - LTR16A LTR ERVL 0 450 27 2280 99 0 3 chr1 275868202 275868496 -6325168 - AluSx SINE Alu -4 308 16 242 264 0 11 chr1 275868641 275868732 -6324932 + GA-rich Low_complexity Low_complexity 4 93 0 1903 134 3 65 chr1 275870962 275871283 -6322381 - AluSx SINE Alu -11 301 1 387 149 0 0 chr1 275872233 275872307 -6321357 + (TC)n Simple_repeat Simple_repeat 1 74 0 2103 111 0 14 chr1 275872963 275873294 -6320370 - AluSq SINE Alu 0 327 1 778 234 136 0 chr1 275873338 275873522 -6320142 - MER63A DNA MER1_type 0 210 2 21 0 0 0 chr1 275874531 275874552 -6319112 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr1 275874718 275874740 -6318924 + (TG)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr1 275874988 275875010 -6318654 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2402 89 3 13 chr1 275875018 275875334 -6318330 - AluSp SINE Alu 0 313 1 220 296 0 0 chr1 275875396 275875450 -6318214 + L2 LINE L2 3203 3256 -16 489 261 139 12 chr1 275875649 275875814 -6317850 + MIR SINE MIR 2 187 -75 867 217 0 6 chr1 275875816 275875973 -6317691 + FRAM SINE Alu 1 154 -22 352 261 187 37 chr1 275876615 275876749 -6316915 + L3 LINE CR1 1326 1479 -98 1702 120 131 8 chr1 275876881 275877140 -6316524 + AluSg1 SINE Alu 1 291 -18 253 294 15 110 chr1 275877688 275877824 -6315840 - L2 LINE L2 -8 3264 3142 315 0 0 0 chr1 275877895 275877930 -6315734 + (TA)n Simple_repeat Simple_repeat 1 35 0 266 0 29 0 chr1 275877929 275877963 -6315701 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 25 99 0 0 chr1 275878048 275878129 -6315535 + AT_rich Low_complexity Low_complexity 1 81 0 247 248 8 8 chr1 275878271 275878388 -6315276 + (CATA)n Simple_repeat Simple_repeat 3 119 0 1895 122 6 52 chr1 275878723 275879050 -6314614 + AluSx SINE Alu 1 312 0 252 244 78 33 chr1 275879316 275879406 -6314258 - MIR SINE MIR -65 197 104 1937 141 7 17 chr1 275881027 275881164 -6312500 + AluSx SINE Alu 1 138 -174 1900 147 0 17 chr1 275881164 275881491 -6312173 + AluJb SINE Alu 1 312 0 1937 141 7 17 chr1 275881491 275881650 -6312014 + AluSx SINE Alu 138 294 -18 650 206 28 56 chr1 275881820 275882034 -6311630 + L1MA9 LINE L1 6067 6274 -38 23 0 0 0 chr1 275882054 275882077 -6311587 + AT_rich Low_complexity Low_complexity 1 23 0 539 274 59 0 chr1 275882235 275882454 -6311210 - L1ME3A LINE L1 -219 5951 5720 435 200 145 94 chr1 275882580 275882778 -6310886 + L1MC4a LINE L1 6122 6335 -1473 1817 176 11 36 chr1 275882778 275883054 -6310610 - MER7A DNA MER2_type -2692 346 81 2155 112 3 3 chr1 275883054 275883357 -6310307 - AluSx SINE Alu -9 303 1 1817 176 11 36 chr1 275883357 275883437 -6310227 - MER7A DNA MER2_type -2957 81 1 435 200 145 94 chr1 275883437 275883473 -6310191 + L1MC4a LINE L1 6335 6368 -1440 1545 279 92 49 chr1 275883612 275884039 -6309625 - L1ME3A LINE L1 -1705 4441 4034 2369 88 3 0 chr1 275884039 275884336 -6309328 - AluSq SINE Alu -15 298 1 1545 279 92 49 chr1 275884336 275884794 -6308870 - L1ME3A LINE L1 -2112 4034 3597 1878 140 0 56 chr1 275884794 275885116 -6308548 - AluJo SINE Alu -8 304 1 1545 279 92 49 chr1 275885116 275886239 -6307425 - L1ME3A LINE L1 -2549 3597 2346 631 292 57 45 chr1 275886983 275887387 -6306277 + MLT1I LTR MaLR 1 409 0 1859 220 55 7 chr1 275887763 275888217 -6305447 + MER21B LTR ERV1 13 488 -375 204 40 0 0 chr1 275888462 275888487 -6305177 + (CA)n Simple_repeat Simple_repeat 1 25 0 630 242 82 0 chr1 275888637 275888819 -6304845 - L2 LINE L2 -704 2610 2414 276 268 0 89 chr1 275888805 275888917 -6304747 - MIR3 SINE MIR -96 112 11 * 2512 80 3 6 chr1 275889074 275889388 -6304276 - AluSp SINE Alu 0 313 1 1522 258 64 87 chr1 275889809 275890206 -6303458 - L2 LINE L2 -858 2456 2078 306 0 0 0 chr1 275890206 275890240 -6303424 + (CA)n Simple_repeat Simple_repeat 2 35 0 1522 258 64 87 chr1 275890240 275890501 -6303163 - L2 LINE L2 -1236 2078 1813 1934 176 121 75 chr1 275890655 275891200 -6302464 + MLT1E1 LTR MaLR 14 592 -62 2036 136 7 3 chr1 275891200 275891494 -6302170 + AluSx SINE Alu 1 295 -17 1934 176 121 75 chr1 275891494 275891561 -6302103 + MLT1E1 LTR MaLR 592 654 0 776 225 113 18 chr1 275891562 275891846 -6301818 + L1ME2 LINE L1 5280 5590 -572 744 147 7 29 chr1 275891854 275891990 -6301674 - FLAM_C SINE Alu -10 133 1 1551 239 54 20 chr1 275891990 275892489 -6301175 + L1ME2 LINE L1 5582 6097 -67 894 291 81 11 chr1 275892522 275892869 -6300795 - L2 LINE L2 -1477 1837 1467 1899 161 55 33 chr1 275893079 275893614 -6300050 + MLT2A2 LTR ERVL 2 554 0 256 296 14 0 chr1 275893874 275893945 -6299719 + MIR SINE MIR 22 93 -169 207 157 0 39 chr1 275893973 275894024 -6299640 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 276 279 127 49 chr1 275896979 275897287 -6296377 + LTR16B LTR ERVL 107 438 -26 2142 122 3 0 chr1 275897347 275897641 -6296023 - AluSp SINE Alu -16 297 3 464 303 114 6 chr1 275897969 275898144 -6295520 - MIR SINE MIR -65 197 4 204 162 37 88 chr1 275898862 275898998 -6294666 + (TTATA)n Simple_repeat Simple_repeat 1 129 0 2033 163 20 30 chr1 275898999 275899405 -6294259 - Tigger2a DNA MER2_type -1 433 32 269 254 181 51 chr1 275899852 275899990 -6293674 - MIR SINE MIR -55 207 52 206 305 147 0 chr1 275900434 275900529 -6293135 - MIR SINE MIR -49 213 105 355 264 40 0 chr1 275900558 275900683 -6292981 - L1MEc LINE L1 -4775 1621 1492 189 370 12 0 chr1 275900723 275900804 -6292860 - MIR SINE MIR -171 91 10 323 240 41 58 chr1 275901334 275901455 -6292209 + MIR SINE MIR 35 153 -109 270 236 125 0 chr1 275902073 275902145 -6291519 - MIR SINE MIR -112 96 16 865 193 108 40 chr1 275902518 275902857 -6290807 + MSTD LTR MaLR 1 396 0 1538 212 14 31 chr1 275903273 275903632 -6290032 - MLT1A1 LTR MaLR -12 353 1 235 321 38 19 chr1 275905018 275905124 -6288540 + MIR SINE MIR 152 259 -3 192 311 111 0 chr1 275906844 275906934 -6286730 + L2 LINE L2 3178 3277 -36 259 171 171 24 chr1 275907101 275907183 -6286481 - MIR SINE MIR -21 241 148 271 297 90 0 chr1 275907218 275907329 -6286335 - L1ME3A LINE L1 -53 6117 5997 667 257 18 60 chr1 275907429 275907713 -6285951 - L1ME3A LINE L1 -208 5962 5691 2287 120 0 0 chr1 275907713 275908022 -6285642 + AluSq SINE Alu 1 309 -4 781 238 52 10 chr1 275908058 275908251 -6285413 + MER63A DNA MER1_type 10 210 0 892 285 122 21 chr1 275908253 275909583 -6284081 - L1ME3A LINE L1 -487 5675 4204 1098 252 85 63 chr1 275909674 275910201 -6283463 - MER77 LTR ERV1 -15 590 52 422 288 44 13 chr1 275910221 275910447 -6283217 - L1ME3A LINE L1 -1945 4201 3969 1458 76 53 257 chr1 275910559 275911033 -6282631 + MER51B LTR ERV1 1 377 0 3713 134 29 18 chr1 275911033 275912052 -6281612 + MER51B-int LTR ERV1 1 1114 -6702 21586 119 16 83 chr1 275912054 275916485 -6277179 + L1PA7 LINE L1 12 4141 -2005 7001 87 13 21 chr1 275916589 275918398 -6275266 + L1PA7 LINE L1 4350 6153 -1 2142 137 0 0 chr1 275918445 275918745 -6274919 + AluSx SINE Alu 9 308 -4 1929 122 40 6 chr1 275918747 275919101 -6274563 + MER51B-int LTR ERV1 1094 1459 -6357 4221 97 80 1 chr1 275919201 275919984 -6273680 + MER51B-int LTR ERV1 1893 2880 -4936 250 24 71 0 chr1 275919984 275920026 -6273638 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 4221 97 80 1 chr1 275920026 275920513 -6273151 + MER51B-int LTR ERV1 2880 3327 -4489 1741 164 73 37 chr1 275920485 275920962 -6272702 + MER51B-int LTR ERV1 1474 3365 -2581 * 1929 74 141 9 chr1 275920944 275921270 -6272394 + MER51B-int LTR ERV1 2211 2579 -2638 675 86 0 19 chr1 275921388 275921493 -6272171 + MER51B-int LTR ERV1 5721 5823 -1714 4351 63 15 3 chr1 275921493 275922508 -6271156 + MER11A LTR ERVK 1 1266 0 7108 133 58 50 chr1 275922512 275924276 -6269388 + MER51B-int LTR ERV1 5920 7815 -1 1744 108 196 3 chr1 275924278 275924594 -6269070 + MER51B LTR ERV1 1 377 0 408 268 131 13 chr1 275924666 275924819 -6268845 + L2 LINE L2 2685 2855 -459 254 310 190 41 chr1 275924873 275925189 -6268475 + L2 LINE L2 2950 3312 -1 465 219 114 0 chr1 275925295 275925409 -6268255 + MIR SINE MIR 7 133 -129 901 228 107 11 chr1 275925426 275925698 -6267966 - MER46C DNA MER2_type 0 338 41 337 341 97 34 chr1 275925722 275925898 -6267766 - MIR3 SINE MIR -6 202 16 2353 89 13 0 chr1 275926274 275926576 -6267088 - AluSg SINE Alu -4 306 1 478 254 81 41 chr1 275927660 275927857 -6265807 - MIR SINE MIR -17 245 41 221 207 0 17 chr1 275927968 275928026 -6265638 + CT-rich Low_complexity Low_complexity 4 60 0 274 288 14 0 chr1 275928127 275928200 -6265464 + MLT1J2 LTR MaLR 83 156 -294 265 272 37 25 chr1 275928439 275928520 -6265144 + L1MC/D LINE L1 5569 5650 -2158 770 204 13 33 chr1 275930151 275930303 -6263361 - MER21B LTR ERV1 -646 217 69 4017 126 95 19 chr1 275930348 275931103 -6262561 - Tigger3(Golem) DNA MER2_type 0 3029 2217 243 89 0 161 chr1 275931119 275931156 -6262508 - Tigger3(Golem) DNA MER2_type -2709 320 279 8417 124 41 13 chr1 275931156 275932133 -6261531 + HSMAR2 DNA Mariner 1 1023 -279 2011 145 0 0 chr1 275932133 275932455 -6261209 - AluSx SINE Alu 0 322 1 8417 124 41 13 chr1 275932455 275932741 -6260923 + HSMAR2 DNA Mariner 1023 1300 -2 2307 127 24 34 chr1 275932741 275933119 -6260545 - THE1C LTR MaLR 0 375 1 243 89 0 161 chr1 275933119 275933136 -6260528 - Tigger3(Golem) DNA MER2_type -2748 281 274 * 474 194 86 0 chr1 275933134 275933227 -6260437 - Tigger3(Golem) DNA MER2_type -2927 102 2 256 221 29 29 chr1 275934041 275934109 -6259555 - MLT1K LTR MaLR 0 588 521 2148 184 8 3 chr1 275934496 275934860 -6258804 - MER47A DNA MER2_type 0 366 1 286 313 94 0 chr1 275935105 275935233 -6258431 - MIR SINE MIR -57 205 66 519 293 57 52 chr1 275935395 275935624 -6258040 - MIR SINE MIR -1 261 32 1467 144 26 44 chr1 275936069 275936339 -6257325 - MER50 LTR ERV1 -37 697 433 1413 133 34 4 chr1 275936322 275936555 -6257109 - MER50 LTR ERV1 -494 240 1 * 239 264 75 0 chr1 275936930 275936983 -6256681 + L2 LINE L2 3208 3264 -8 363 157 0 0 chr1 275937715 275937785 -6255879 + T-rich Low_complexity Low_complexity 1 70 0 315 366 63 0 chr1 275937965 275938107 -6255557 - MIR3 SINE MIR -42 166 16 27 49 0 0 chr1 275938818 275938859 -6254805 + AT_rich Low_complexity Low_complexity 1 41 0 237 132 0 0 chr1 275939073 275939111 -6254553 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 1653 172 6 50 chr1 275939111 275939431 -6254233 - AluJo SINE Alu -6 306 1 1337 216 60 26 chr1 275939453 275939805 -6253859 - MLT1A2 LTR MaLR 0 374 11 367 91 15 15 chr1 275939825 275939891 -6253773 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 24724 46 3 1 chr1 275939906 275943265 -6250399 + L1P2 LINE L1 2340 5704 -450 891 71 18 0 chr1 275943267 275943380 -6250284 + L1PA5 LINE L1 6036 6150 -4 1073 223 51 12 chr1 275943459 275943693 -6249971 - L1ME1 LINE L1 -3 6163 5917 4887 57 17 0 chr1 275943693 275944275 -6249389 + L1PA8 LINE L1 5568 6159 -13 1073 223 51 12 chr1 275944275 275944296 -6249368 - L1ME1 LINE L1 -249 5917 5898 1479 206 32 40 chr1 275944337 275944716 -6248948 - L1ME1 LINE L1 -235 5931 5556 1543 229 92 28 chr1 275944721 275944989 -6248675 - L1ME1 LINE L1 -734 5444 5195 2605 56 0 0 chr1 275944989 275945295 -6248369 - AluY SINE Alu -5 306 1 1543 229 92 28 chr1 275945295 275945655 -6248009 - L1ME1 LINE L1 -983 5195 4782 247 200 20 0 chr1 275946004 275946054 -6247610 - L3 LINE CR1 -354 1223 1173 223 296 14 0 chr1 275946130 275946201 -6247463 + (TA)n Simple_repeat Simple_repeat 2 73 0 315 122 0 0 chr1 275946352 275946401 -6247263 + (ATG)n Simple_repeat Simple_repeat 3 51 0 375 60 0 0 chr1 275947205 275947255 -6246409 + (TG)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr1 275947337 275947358 -6246306 + AT_rich Low_complexity Low_complexity 1 21 0 311 317 77 61 chr1 275949235 275949481 -6244183 + L3 LINE CR1 1321 1570 -7 237 292 77 23 chr1 275949503 275949633 -6244031 - LTR16A1 LTR ERVL 0 457 321 1768 193 3 3 chr1 275950186 275950492 -6243172 - AluJb SINE Alu -6 306 1 723 325 112 28 chr1 275951144 275951780 -6241884 + L2 LINE L2 1802 2490 -824 357 256 32 8 chr1 275951968 275952093 -6241571 - LTR16A1 LTR ERVL 0 457 330 * 950 264 75 45 chr1 275952077 275952502 -6241162 - LTR16A1 LTR ERVL -19 438 1 195 308 140 84 chr1 275952669 275952990 -6240674 + L2 LINE L2 2918 3256 -16 342 182 221 0 chr1 275953476 275953553 -6240111 - L1ME1 LINE L1 -8 6158 6065 350 198 49 0 chr1 275953590 275953671 -6239993 - L1ME1 LINE L1 -225 5941 5857 1270 108 6 0 chr1 275953689 275953856 -6239808 - AluSp SINE Alu -28 285 118 1063 204 88 4 chr1 275953961 275954106 -6239558 - L1ME1 LINE L1 -536 5628 5454 282 29 0 0 chr1 275954106 275954141 -6239523 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1063 204 88 4 chr1 275954141 275954235 -6239429 - L1ME1 LINE L1 -710 5454 5369 757 238 32 21 chr1 275954288 275954477 -6239187 - MLT2B1 LTR ERVL -329 191 1 317 255 57 43 chr1 275954489 275954630 -6239034 - L1P LINE L1 -783 5363 5221 * 437 245 36 29 chr1 275954620 275954759 -6238905 - L1ME1 LINE L1 -978 5168 5029 246 246 18 53 chr1 275954947 275955061 -6238603 + L1ME4a LINE L1 5968 6077 -44 549 232 83 46 chr1 275956268 275956509 -6237155 + L2 LINE L2 3052 3301 -12 1815 164 34 0 chr1 275956511 275956809 -6236855 - AluSx SINE Alu -2 310 3 229 317 0 37 chr1 275957007 275957089 -6236575 - L2 LINE L2 0 3313 3235 471 308 45 0 chr1 275957319 275957452 -6236212 - L2 LINE L2 -1 3271 3133 488 157 24 0 chr1 275957844 275957927 -6235737 - MER5B DNA MER1_type 0 178 94 294 298 30 46 chr1 275958244 275958375 -6235289 - L2 LINE L2 -10 3303 3175 307 290 37 9 chr1 275958415 275958522 -6235142 + L3 LINE CR1 1258 1367 -210 205 298 12 12 chr1 275958570 275958654 -6235010 - MIR SINE MIR -24 238 155 2476 67 0 0 chr1 275958737 275959034 -6234630 + AluY SINE Alu 1 297 -14 346 250 56 94 chr1 275961750 275962071 -6231593 - LTR45B LTR ERV1 0 568 305 1454 171 104 7 chr1 275962215 275962502 -6231162 + L1MC1 LINE L1 5609 5923 -410 1617 168 35 0 chr1 275962502 275962787 -6230877 + Tigger1 DNA MER2_type 1 295 -2123 2396 88 0 0 chr1 275962787 275963083 -6230581 + AluSg SINE Alu 1 296 -14 1886 229 67 22 chr1 275963175 275963665 -6229999 - MLT1F LTR MaLR -29 513 2 472 286 114 33 chr1 275964104 275964534 -6229130 - L1MCa LINE L1 -3474 2952 2488 346 284 97 46 chr1 275964610 275964920 -6228744 - L1MCa LINE L1 -4029 2397 2122 28 48 0 0 chr1 275965655 275965697 -6227967 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr1 275965774 275965805 -6227859 + AT_rich Low_complexity Low_complexity 1 31 0 210 261 65 0 chr1 275967504 275967596 -6226068 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 421 316 155 10 chr1 275968591 275968784 -6224880 + MIR SINE MIR 27 247 -15 2240 108 3 3 chr1 275969622 275969919 -6223745 - AluSx SINE Alu -15 297 1 3417 181 48 22 chr1 275970020 275970151 -6223513 + MER67C LTR ERV1 3 129 -581 333 0 0 0 chr1 275970151 275970188 -6223476 + (TG)n Simple_repeat Simple_repeat 2 38 0 3417 181 48 22 chr1 275970188 275970746 -6222918 + MER67C LTR ERV1 129 710 0 511 261 17 0 chr1 275970746 275970861 -6222803 - L2 LINE L2 -8 3305 3189 2086 141 0 22 chr1 275971134 275971453 -6222211 + AluSx SINE Alu 1 312 0 2381 95 0 0 chr1 275971840 275972145 -6221519 - AluY SINE Alu -6 305 1 377 287 155 52 chr1 275972658 275972832 -6220832 - MIR SINE MIR -49 213 22 837 201 83 6 chr1 275973805 275973974 -6219690 - AluJb SINE Alu -24 288 107 396 149 0 174 chr1 275973979 275974100 -6219564 - MER50 LTR ERV1 -150 584 485 634 92 0 19 chr1 275974323 275974562 -6219102 + AluSx SINE Alu 1 299 -11 11001 177 122 9 chr1 275975330 275977765 -6215899 - L1PBa LINE L1 -4150 2713 6 913 274 53 14 chr1 275978000 275978358 -6215306 + L1ME3 LINE L1 5594 5965 -205 226 283 104 19 chr1 275978434 275978540 -6215124 + L1ME3 LINE L1 5969 6083 -79 285 194 67 15 chr1 275978584 275978718 -6214946 - Charlie7 DNA MER1_type -67 2545 2405 7474 55 3 8 chr1 275978720 275979684 -6213980 + L1PA7 LINE L1 5171 6152 -2 183 258 65 32 chr1 275980443 275980505 -6213159 - L2 LINE L2 -2 3270 3207 875 322 69 16 chr1 275980940 275981319 -6212345 + MLT1I LTR MaLR 4 402 -7 2241 208 64 118 chr1 275981844 275981983 -6211681 + MER21B LTR ERV1 1 146 -717 1722 83 31 0 chr1 275981983 275982211 -6211453 - L1MA1 LINE L1 0 6302 6068 2241 208 64 118 chr1 275982211 275982927 -6210737 + MER21B LTR ERV1 146 810 -53 2116 123 0 29 chr1 275983279 275983589 -6210075 + AluSx SINE Alu 1 301 -11 1888 162 29 14 chr1 275984163 275984509 -6209155 - MER65A LTR ERV1 0 445 95 661 318 30 17 chr1 275984858 275985094 -6208570 + MLT1I LTR MaLR 4 242 -167 * 671 130 52 17 chr1 275985086 275985201 -6208463 - MER65B LTR ERV1 -412 119 1 208 139 0 28 chr1 275985324 275985339 -6208325 + (GAAA)n Simple_repeat Simple_repeat 4 18 -20 2266 119 3 0 chr1 275985339 275985651 -6208013 + AluSp SINE Alu 1 313 0 208 139 0 28 chr1 275985651 275985671 -6207993 + (GAAA)n Simple_repeat Simple_repeat 18 38 0 228 367 18 9 chr1 275986256 275986365 -6207299 + MIR SINE MIR 66 175 -87 1328 220 101 25 chr1 275986402 275986451 -6207213 + MSTD LTR MaLR 1 45 -351 1438 118 191 11 chr1 275986451 275986713 -6206951 + AluSg1 SINE Alu 1 309 0 1328 220 101 25 chr1 275986713 275987031 -6206633 + MSTD LTR MaLR 45 396 0 2506 69 0 19 chr1 275987084 275987401 -6206263 + AluY SINE Alu 1 311 0 21 57 0 0 chr1 275987615 275987650 -6206014 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 275987976 275988005 -6205659 + AT_rich Low_complexity Low_complexity 1 29 0 796 272 30 52 chr1 275988353 275988621 -6205043 - MIR SINE MIR 0 262 1 2153 113 10 0 chr1 275988994 275989294 -6204370 - AluSq SINE Alu -10 303 1 306 203 17 0 chr1 275989603 275989662 -6204002 + L2 LINE L2 3207 3266 -6 439 200 61 17 chr1 275990110 275990225 -6203439 - MIR SINE MIR -15 247 128 2242 118 0 22 chr1 275990483 275990798 -6202866 + AluSx SINE Alu 1 308 -4 1707 181 7 10 chr1 275991452 275991755 -6201909 - AluJo SINE Alu -6 306 5 2226 118 7 0 chr1 275992491 275992796 -6200868 - AluSg SINE Alu -3 307 1 1004 238 227 18 chr1 275992831 275993285 -6200379 + MLT1H LTR MaLR 1 549 0 733 218 0 36 chr1 275994055 275994220 -6199444 + MER97b DNA MER1_type? 21 179 -874 324 0 0 0 chr1 275994585 275994621 -6199043 + (TG)n Simple_repeat Simple_repeat 2 37 0 2195 124 0 0 chr1 275996328 275996627 -6197037 - AluSx SINE Alu -13 299 1 4666 59 5 0 chr1 275996647 275997204 -6196460 + L1PA7 LINE L1 5593 6152 -2 1467 228 97 27 chr1 275997869 275997889 -6195775 + L1MC4 LINE L1 6461 6478 -1564 1839 180 0 3 chr1 275997889 275998189 -6195475 + AluJb SINE Alu 1 299 -13 1467 228 97 27 chr1 275998189 275998571 -6195093 + L1MC4 LINE L1 6478 6891 -1151 568 219 55 27 chr1 275998604 275998750 -6194914 + L1MC4 LINE L1 7764 7913 -129 259 164 66 0 chr1 275998738 275998799 -6194865 + L1MC4a LINE L1 7755 7807 -1 * 2046 130 16 3 chr1 275998915 275999222 -6194442 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 275999754 275999784 -6193880 + AT_rich Low_complexity Low_complexity 1 30 0 235 258 0 15 chr1 276000826 276000892 -6192772 + L1ME4a LINE L1 5961 6025 -96 21 57 0 0 chr1 276000948 276000983 -6192681 + AT_rich Low_complexity Low_complexity 1 35 0 2140 151 3 40 chr1 276001592 276001876 -6191788 - MER7A DNA MER2_type -2692 346 78 2130 103 7 10 chr1 276001876 276002166 -6191498 + AluSq SINE Alu 1 289 -24 2140 151 3 40 chr1 276002166 276002233 -6191431 - MER7A DNA MER2_type -2960 78 10 219 345 35 35 chr1 276002650 276002792 -6190872 + MIR SINE MIR 23 164 -98 * 633 271 177 31 chr1 276002782 276003099 -6190565 + L2 LINE L2 2951 3313 0 310 304 127 0 chr1 276003129 276003287 -6190377 + L1MCc LINE L1 25 202 -6221 685 238 91 127 chr1 276003470 276004522 -6189142 + L1M4 LINE L1 2402 3380 -2766 2315 169 106 102 chr1 276004587 276005138 -6188526 - LTR39 LTR ERV1 -1 782 226 2258 70 47 3 chr1 276005138 276005437 -6188227 - AluSx SINE Alu 0 312 1 2315 169 106 102 chr1 276005437 276005535 -6188129 - LTR39 LTR ERV1 -557 226 130 572 222 0 0 chr1 276005537 276005636 -6188028 + LTR39 LTR ERV1 685 783 0 309 115 0 19 chr1 276005787 276005839 -6187825 - LTR39 LTR ERV1 -690 93 43 342 0 0 0 chr1 276005860 276005898 -6187766 + (TG)n Simple_repeat Simple_repeat 2 39 0 598 227 80 7 chr1 276005902 276006052 -6187612 - MER20 DNA MER1_type -58 161 1 4676 224 84 48 chr1 276006093 276007347 -6186317 + L1M4 LINE L1 3495 4702 -1460 789 157 117 56 chr1 276007347 276007544 -6186120 - MER3 DNA MER1_type 0 209 1 4676 224 84 48 chr1 276007544 276007600 -6186064 + L1M4 LINE L1 4702 4755 -1407 1608 155 0 22 chr1 276007600 276007877 -6185787 + AluJo SINE Alu 42 312 0 4676 224 84 48 chr1 276007877 276008206 -6185458 + L1M4 LINE L1 4755 5071 -1091 2242 119 3 0 chr1 276008206 276008517 -6185147 + AluSx SINE Alu 1 312 0 4676 224 84 48 chr1 276008517 276008738 -6184926 + L1M4 LINE L1 5071 5419 -743 317 333 44 63 chr1 276008753 276008912 -6184752 - L2 LINE L2 -254 3059 2904 1848 302 132 58 chr1 276008930 276008992 -6184672 - L2 LINE L2 -560 2754 2698 964 70 13 19 chr1 276008992 276009150 -6184514 + (TA)n Simple_repeat Simple_repeat 2 158 0 1848 302 132 58 chr1 276009150 276010715 -6182949 - L2 LINE L2 -616 2698 1007 246 293 98 0 chr1 276011815 276011897 -6181767 - MIR3 SINE MIR -21 187 98 365 222 46 19 chr1 276012307 276012415 -6181249 + Charlie7 DNA MER1_type 47 157 -2455 * 1844 242 125 25 chr1 276012398 276013127 -6180537 + Charlie7 DNA MER1_type 1599 2253 -359 2194 107 7 0 chr1 276013127 276013416 -6180248 + AluSx SINE Alu 1 291 -21 1844 242 125 25 chr1 276013416 276013563 -6180101 + Charlie7 DNA MER1_type 2253 2384 -228 306 0 0 0 chr1 276013563 276013597 -6180067 + (TA)n Simple_repeat Simple_repeat 2 35 0 1844 242 125 25 chr1 276013597 276013636 -6180028 + Charlie7 DNA MER1_type 2384 2607 -5 506 128 35 0 chr1 276013720 276013806 -6179858 - L1MB3 LINE L1 -8 6175 6087 207 265 232 33 chr1 276013849 276014000 -6179664 - MIR SINE MIR -50 212 32 4886 131 64 110 chr1 276014021 276015168 -6178496 + pTR5 LTR ERV1 30 277 -437 289 273 10 0 chr1 276015168 276015267 -6178397 + LTR30 LTR ERV1 544 643 -79 1627 102 8 8 chr1 276015270 276015515 -6178149 + pTR5 LTR ERV1 173 417 -2021 291 28 0 0 chr1 276016954 276016990 -6176674 + (CA)n Simple_repeat Simple_repeat 2 37 0 2014 55 0 59 chr1 276017359 276017630 -6176034 - AluY SINE Alu 0 311 57 180 176 0 0 chr1 276018949 276018983 -6174681 + (TA)n Simple_repeat Simple_repeat 2 35 0 2331 91 0 0 chr1 276019030 276019317 -6174347 - AluSq SINE Alu -26 287 1 363 98 92 0 chr1 276019782 276019945 -6173719 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 82 0 0 chr1 276019952 276020001 -6173663 + AT_rich Low_complexity Low_complexity 1 49 0 280 186 47 0 chr1 276020005 276020177 -6173487 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 259 49 0 chr1 276020964 276021063 -6172601 + MIR SINE MIR 45 147 -62 669 264 0 95 chr1 276021471 276021755 -6171909 - L2 LINE L2 -809 2505 2249 277 254 0 0 chr1 276021755 276021810 -6171854 - L2 LINE L2 -987 2327 2273 1528 306 78 4 chr1 276021810 276022373 -6171291 - L2 LINE L2 -960 2354 1750 1379 123 0 0 chr1 276022620 276022807 -6170857 + AluSq SINE Alu 1 187 -126 667 283 145 32 chr1 276022807 276023277 -6170387 - L2 LINE L2 -2288 1026 504 2223 151 41 32 chr1 276023277 276023821 -6169843 - MLT2A2 LTR ERVL 0 554 1 217 306 129 12 chr1 276023862 276023947 -6169717 - L2 LINE L2 -2895 419 325 474 312 75 0 chr1 276024513 276024699 -6168965 + MIR SINE MIR 57 256 -6 569 138 0 18 chr1 276025100 276025209 -6168455 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 890 213 0 23 chr1 276025211 276025385 -6168279 + FRAM SINE Alu 1 169 -7 3059 210 33 26 chr1 276026000 276026651 -6167013 + L1MA9 LINE L1 5456 6116 -196 2024 119 7 7 chr1 276026651 276026946 -6166718 - AluSg SINE Alu -15 295 1 3059 210 33 26 chr1 276026946 276027107 -6166557 + L1MA9 LINE L1 6116 6274 -38 281 47 23 0 chr1 276027778 276027821 -6165843 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 232 308 15 0 chr1 276027842 276027907 -6165757 - MIR SINE MIR -195 67 2 358 240 139 105 chr1 276028646 276028913 -6164751 - L1ME4a LINE L1 -32 6089 5814 314 307 55 37 chr1 276028954 276029117 -6164547 + L1ME LINE L1 510 675 -5855 276 256 59 79 chr1 276029212 276029517 -6164147 + L1ME LINE L1 1662 2002 -4584 8242 112 38 7 chr1 276029542 276031409 -6162255 + L1PA10 LINE L1 3919 5844 -324 1180 253 57 20 chr1 276031423 276031830 -6161834 + L1ME3A LINE L1 5733 6154 -16 500 285 51 40 chr1 276031850 276032134 -6161530 - L1ME4a LINE L1 -293 5828 5538 2110 136 0 0 chr1 276032781 276033076 -6160588 - AluSx SINE Alu -17 295 1 455 274 149 19 chr1 276033276 276033484 -6160180 - MIR SINE MIR -15 247 13 351 65 0 0 chr1 276034253 276034299 -6159365 + (CA)n Simple_repeat Simple_repeat 2 47 0 183 237 118 43 chr1 276034831 276034924 -6158740 - L3b LINE CR1 -244 1339 1240 * 302 307 73 13 chr1 276034911 276035061 -6158603 + L2 LINE L2 3150 3308 -5 229 241 0 35 chr1 276036634 276036692 -6156972 - L2 LINE L2 -13 3259 3204 228 213 64 0 chr1 276036822 276036869 -6156795 - L2 LINE L2 0 3272 3223 478 280 159 0 chr1 276036919 276037108 -6156556 + MIR SINE MIR 41 259 -3 224 304 0 6 chr1 276037358 276037526 -6156138 + (CCA)n Simple_repeat Simple_repeat 3 169 0 460 274 38 24 chr1 276037636 276037819 -6155845 + MER5A DNA MER1_type 1 176 -2 182 273 0 0 chr1 276038035 276038079 -6155585 + MIR SINE MIR 103 146 -62 * 298 250 14 0 chr1 276038078 276038150 -6155514 - MIR SINE MIR -106 102 30 1121 29 0 0 chr1 276038318 276038455 -6155209 + L1P2 LINE L1 5636 5772 -383 7582 24 0 12 chr1 276038455 276039494 -6154170 + L1PA4 LINE L1 5128 6154 -1 858 264 135 41 chr1 276039661 276039984 -6153680 + L2 LINE L2 2804 3186 -127 1812 167 0 16 chr1 276039984 276040289 -6153375 + AluJo SINE Alu 1 300 -12 858 264 135 41 chr1 276040289 276040431 -6153233 + L2 LINE L2 3186 3313 0 312 288 0 0 chr1 276040659 276040732 -6152932 + L2 LINE L2 3191 3263 -9 468 260 81 114 chr1 276041637 276041772 -6151892 + L2 LINE L2 3016 3154 -159 2433 109 0 0 chr1 276041772 276042083 -6151581 - AluSx SINE Alu -1 311 1 468 260 81 114 chr1 276042083 276042255 -6151409 + L2 LINE L2 3154 3313 0 322 349 135 0 chr1 276042261 276042387 -6151277 + MIR SINE MIR 11 153 -109 202 220 0 0 chr1 276042389 276042439 -6151225 + (TAA)n Simple_repeat Simple_repeat 1 50 0 199 255 0 21 chr1 276042935 276042982 -6150682 + L2 LINE L2 3215 3260 -12 2110 110 0 29 chr1 276043150 276043458 -6150206 + AluSx SINE Alu 1 299 -13 190 200 0 0 chr1 276045121 276045161 -6148503 - MIR SINE MIR -215 47 8 1794 138 25 34 chr1 276045348 276045675 -6147989 + THE1B LTR MaLR 1 324 -40 2402 109 0 0 chr1 276045676 276045988 -6147676 + AluSx SINE Alu 1 312 0 690 182 6 38 chr1 276046217 276046376 -6147288 - MER3 DNA MER1_type -1 208 55 200 262 0 0 chr1 276046610 276046652 -6147012 + CT-rich Low_complexity Low_complexity 2 43 0 321 131 0 0 chr1 276046653 276046714 -6146950 + (CA)n Simple_repeat Simple_repeat 2 62 0 282 95 0 0 chr1 276046756 276046798 -6146866 + (CA)n Simple_repeat Simple_repeat 2 43 0 217 365 96 0 chr1 276047260 276047364 -6146300 - MIR SINE MIR -62 146 33 2110 138 0 0 chr1 276050097 276050394 -6143270 + AluSx SINE Alu 1 297 -15 422 169 48 0 chr1 276050499 276050582 -6143082 + MER53 DNA DNA 103 189 0 2408 76 7 3 chr1 276052830 276053132 -6140532 + AluSp SINE Alu 1 303 -10 6417 195 29 11 chr1 276053496 276056026 -6137638 - L1MB7 LINE L1 -16 6168 3591 2607 228 111 36 chr1 276056045 276057211 -6136453 + L1MD1 LINE L1 33 1479 -5061 2284 107 7 0 chr1 276057211 276057509 -6136155 + AluSx SINE Alu 1 300 -12 2607 228 111 36 chr1 276057509 276057654 -6136010 + L1MD1 LINE L1 1479 1612 -4928 1260 258 35 13 chr1 276057692 276058479 -6135185 + L1MD1 LINE L1 5033 5871 -743 83 77 0 0 chr1 276058486 276058667 -6134997 + AT_rich Low_complexity Low_complexity 1 181 0 1749 189 11 21 chr1 276058690 276058799 -6134865 + L1MD1 LINE L1 5888 5997 -639 2209 121 3 10 chr1 276058799 276059113 -6134551 + AluSx SINE Alu 1 312 0 1749 189 11 21 chr1 276059113 276059384 -6134280 + L1MD1 LINE L1 5997 6264 -372 1538 182 23 3 chr1 276059386 276059693 -6133971 + L1MD1 LINE L1 6319 6631 -5 227 212 115 71 chr1 276059696 276059752 -6133912 + L1ME3 LINE L1 3609 3661 -2485 1924 119 0 0 chr1 276059752 276060012 -6133652 + AluSx SINE Alu 38 297 -15 227 212 115 71 chr1 276060012 276060068 -6133596 + L1ME3 LINE L1 3661 3726 -2420 459 208 104 0 chr1 276060359 276060484 -6133180 + MER106B DNA MER1_type 896 1033 -26 668 307 50 49 chr1 276060502 276061177 -6132487 + L1ME3 LINE L1 4033 4708 -1438 315 212 0 0 chr1 276061398 276061464 -6132200 + L1ME3 LINE L1 5624 5689 -473 837 273 81 21 chr1 276061589 276061974 -6131690 + L1ME3 LINE L1 5753 6160 -2 219 133 33 17 chr1 276062078 276062138 -6131526 + (TA)n Simple_repeat Simple_repeat 2 62 0 314 172 0 16 chr1 276062404 276062468 -6131196 - LTR41 LTR ERVL -704 69 7 752 304 109 2 chr1 276062479 276062972 -6130692 + L1ME3A LINE L1 5369 5914 -256 439 198 0 0 chr1 276063210 276063291 -6130373 + FLAM_A SINE Alu 44 124 -18 2067 124 10 10 chr1 276063295 276063601 -6130063 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr1 276063636 276063661 -6130003 + AT_rich Low_complexity Low_complexity 1 25 0 37 39 0 0 chr1 276065762 276065813 -6127851 + AT_rich Low_complexity Low_complexity 1 51 0 727 226 36 10 chr1 276065891 276066086 -6127578 - MLT1E LTR MaLR -3 590 391 1796 254 58 64 chr1 276066093 276066957 -6126707 + L2 LINE L2 2324 3176 -137 2020 133 7 17 chr1 276066957 276067257 -6126407 + AluSg SINE Alu 1 297 -13 1796 254 58 64 chr1 276067257 276067395 -6126269 + L2 LINE L2 3176 3313 0 799 314 41 36 chr1 276067391 276067779 -6125885 - L2 LINE L2 -483 2831 2442 * 1886 318 106 29 chr1 276067779 276068142 -6125522 - L2 LINE L2 -1232 2082 1749 2247 105 0 7 chr1 276068142 276068446 -6125218 - AluSx SINE Alu -10 302 1 1886 318 106 29 chr1 276068446 276069231 -6124433 - L2 LINE L2 -1565 1749 845 493 290 13 19 chr1 276069239 276069394 -6124270 - MER5A DNA MER1_type -35 154 1 189 234 64 85 chr1 276069409 276069503 -6124161 - L2 LINE L2 -2931 383 292 421 269 8 113 chr1 276070360 276070520 -6123144 + MIR SINE MIR 48 177 -85 2291 105 3 0 chr1 276070520 276070816 -6122848 + AluSg SINE Alu 1 297 -13 421 269 8 113 chr1 276070816 276070893 -6122771 + MIR SINE MIR 177 260 -2 272 257 79 30 chr1 276071393 276071494 -6122170 + MIR SINE MIR 96 201 -61 321 253 315 25 chr1 276071542 276071704 -6121960 + L2 LINE L2 2030 2238 -1076 813 187 17 61 chr1 276071704 276071934 -6121730 + MER96B DNA MER1_type? 2 221 -196 323 273 25 16 chr1 276071939 276072060 -6121604 + L2 LINE L2 2251 2372 -942 404 267 4 0 chr1 276072073 276072347 -6121317 + (CA)n Simple_repeat Simple_repeat 1 275 0 882 307 139 29 chr1 276072350 276073147 -6120517 + L2 LINE L2 2379 3277 -36 7535 29 13 0 chr1 276073404 276074762 -6118902 - L1PA3 LINE L1 -5 6150 4784 723 193 44 0 chr1 276075142 276075323 -6118341 - MER53 DNA DNA 0 189 1 254 306 121 32 chr1 276075451 276075471 -6118193 - L2 LINE L2 0 3313 3296 2308 84 10 0 chr1 276075471 276075768 -6117896 + AluSp SINE Alu 1 300 -13 254 306 121 32 chr1 276075768 276075871 -6117793 - L2 LINE L2 -17 3296 3179 235 185 19 0 chr1 276075921 276075975 -6117689 + L1ME3A LINE L1 5908 5962 -208 261 279 51 0 chr1 276076213 276076292 -6117372 - L1ME3 LINE L1 -8 6154 6072 2290 112 0 0 chr1 276076356 276076659 -6117005 - AluSg SINE Alu -7 303 1 2064 209 11 2 chr1 276077894 276078329 -6115335 + L1PB4 LINE L1 5717 6155 -1 187 286 117 107 chr1 276078494 276078690 -6114974 - MIR SINE MIR -33 229 32 371 253 0 13 chr1 276080090 276080169 -6113495 - MIR3 SINE MIR -7 201 124 261 0 0 0 chr1 276080634 276080663 -6113001 + (TC)n Simple_repeat Simple_repeat 2 30 0 333 0 0 0 chr1 276080852 276080889 -6112775 + (TA)n Simple_repeat Simple_repeat 1 37 0 226 348 35 17 chr1 276081075 276081190 -6112474 - MLT1I LTR MaLR -189 220 104 2204 108 0 3 chr1 276081461 276081748 -6111916 + AluSq SINE Alu 1 286 -27 1156 324 44 26 chr1 276081858 276082409 -6111255 - ERVL LTR ERVL -383 5381 4808 1857 123 8 0 chr1 276082409 276082662 -6111002 + AluSg SINE Alu 44 298 -12 1156 324 44 26 chr1 276082662 276082953 -6110711 - ERVL LTR ERVL -956 4808 4524 2494 142 28 19 chr1 276083003 276083425 -6110239 + MSTB LTR MaLR 1 426 0 1165 250 67 56 chr1 276083652 276083932 -6109732 + L1MCa LINE L1 1334 1609 -4817 1242 155 35 0 chr1 276083932 276084158 -6109506 - L1MA5A LINE L1 0 6297 6064 1165 250 67 56 chr1 276084158 276084746 -6108918 + L1MCa LINE L1 1609 2189 -4237 1686 76 0 0 chr1 276084746 276084956 -6108708 + AluY SINE Alu 1 210 -101 1165 250 67 56 chr1 276084956 276085405 -6108259 + L1MCa LINE L1 2189 2833 -3593 587 276 33 0 chr1 276085745 276085897 -6107767 + MIR SINE MIR 1 157 -105 4754 218 66 9 chr1 276086137 276087419 -6106245 + Charlie1a DNA MER1_type 1 1355 -100 290 255 11 11 chr1 276087499 276087593 -6106071 + Charlie1a DNA MER1_type 1351 1444 -11 393 300 69 34 chr1 276087823 276088207 -6105457 + MLT1L LTR MaLR 110 574 -41 1956 238 36 67 chr1 276088400 276089729 -6103935 + L1MA8 LINE L1 7 2052 -4999 2263 128 0 0 chr1 276089729 276090041 -6103623 + AluSx SINE Alu 1 312 0 1956 238 36 67 chr1 276090041 276090457 -6103207 + L1MA8 LINE L1 2052 2479 -4572 9753 169 35 53 chr1 276090478 276091523 -6102141 + L1MA8 LINE L1 3749 4812 -2439 1808 66 39 12 chr1 276091523 276091780 -6101884 - L1PA5 LINE L1 0 6154 5891 9753 169 35 53 chr1 276091780 276094353 -6099311 + L1MA8 LINE L1 4812 7245 -6 24 77 0 0 chr1 276094353 276094405 -6099259 + AT_rich Low_complexity Low_complexity 1 52 0 378 264 105 108 chr1 276095187 276095521 -6098143 + L2 LINE L2 2931 3263 -9 22 0 0 0 chr1 276095642 276095664 -6098000 + AT_rich Low_complexity Low_complexity 1 22 0 463 231 116 116 chr1 276096090 276096445 -6097219 + MLT1J LTR MaLR 156 510 -1 291 291 20 20 chr1 276096788 276096936 -6096728 + L1M4 LINE L1 3340 3487 -2659 4508 113 28 117 chr1 276098235 276099460 -6094204 - pTR5 LTR ERV1 0 2606 1524 542 168 88 0 chr1 276099473 276099586 -6094078 - pTR5 LTR ERV1 -1573 865 743 257 310 107 25 chr1 276100464 276100706 -6092958 + L1M4 LINE L1 3881 4142 -2004 2746 142 12 2 chr1 276101202 276101626 -6092038 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr1 276101939 276101960 -6091704 + AT_rich Low_complexity Low_complexity 1 21 0 1923 111 32 14 chr1 276102246 276102557 -6091107 - AluSx SINE Alu 0 316 1 353 249 181 23 chr1 276102744 276103009 -6090655 + L1M4 LINE L1 4264 4570 -1576 324 104 0 90 chr1 276103239 276103306 -6090358 + MIR SINE MIR 86 146 -62 186 167 0 0 chr1 276103417 276103453 -6090211 + (TTA)n Simple_repeat Simple_repeat 2 37 0 312 333 89 35 chr1 276103468 276103726 -6089938 + L1M4 LINE L1 5068 5339 -807 2054 141 0 10 chr1 276103731 276104028 -6089636 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr1 276104045 276104066 -6089598 + AT_rich Low_complexity Low_complexity 1 21 0 335 286 26 26 chr1 276104178 276104332 -6089332 + MER69 DNA AcHobo 277 430 -796 1187 196 58 28 chr1 276104346 276104709 -6088955 + MER69 DNA AcHobo 1937 2310 -216 625 229 14 78 chr1 276105558 276105680 -6087984 - L1MD3 LINE L1 -10 7985 7882 572 168 219 0 chr1 276105680 276105835 -6087829 - MER53 DNA DNA 0 189 1 625 229 14 78 chr1 276105835 276105930 -6087734 - L1MD3 LINE L1 -113 7882 7782 2298 102 7 0 chr1 276106676 276106979 -6086685 + AluSp SINE Alu 1 305 -8 313 218 13 13 chr1 276107567 276107645 -6086019 - MLT1H LTR MaLR -387 162 85 2286 104 0 3 chr1 276108255 276108553 -6085111 - AluSg SINE Alu -13 297 1 28 0 0 0 chr1 276108623 276108651 -6085013 + AT_rich Low_complexity Low_complexity 1 28 0 224 396 0 0 chr1 276108798 276108909 -6084755 + MIR SINE MIR 37 147 -115 2494 53 0 0 chr1 276110189 276110491 -6083173 - AluY SINE Alu -9 302 1 4757 182 37 31 chr1 276110718 276110794 -6082870 - L1MD2 LINE L1 -13 6346 6272 396 0 0 0 chr1 276110794 276110838 -6082826 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2516 87 0 0 chr1 276110843 276111153 -6082511 - AluSx SINE Alu -2 310 1 4757 182 37 31 chr1 276111153 276111279 -6082385 - L1MD2 LINE L1 -90 6269 6145 4485 167 39 9 chr1 276111279 276112119 -6081545 - MER6 DNA MER2_type 0 865 1 4757 182 37 31 chr1 276112119 276113263 -6080401 - L1MD2 LINE L1 -214 6145 4984 2386 76 7 3 chr1 276113460 276113763 -6079901 - AluY SINE Alu -7 304 1 403 116 101 0 chr1 276114347 276114416 -6079248 - MADE1 DNA Mariner 0 80 5 2055 136 7 19 chr1 276115074 276115382 -6078282 + AluSx SINE Alu 1 304 -8 509 268 168 6 chr1 276115810 276115989 -6077675 + MIR SINE MIR 40 247 -15 331 363 39 42 chr1 276116462 276116721 -6076943 - L2 LINE L2 -792 2522 2265 2852 154 21 2 chr1 276117512 276117980 -6075684 - MER61D LTR ERV1 0 501 25 232 172 0 17 chr1 276117951 276118009 -6075655 - LTR28 LTR ERV1 -963 57 1 * 214 360 0 27 chr1 276118116 276118191 -6075473 + MIR SINE MIR 11 83 -179 1596 175 46 0 chr1 276118258 276118538 -6075126 - AluJo SINE Alu -17 295 3 312 333 49 0 chr1 276118579 276118681 -6074983 - MIR SINE MIR -140 122 16 328 300 10 0 chr1 276118762 276118862 -6074802 + MIR SINE MIR 158 258 -4 262 303 236 10 chr1 276120119 276120327 -6073337 - L2 LINE L2 -994 2320 2066 741 294 53 16 chr1 276120364 276120512 -6073152 + L1MEd LINE L1 6 147 -5972 1711 185 6 13 chr1 276120512 276120826 -6072838 + AluJo SINE Alu 1 312 0 741 294 53 16 chr1 276120826 276120997 -6072667 + L1MEd LINE L1 147 337 -5782 1057 161 9 54 chr1 276121062 276121285 -6072379 + L1MC1 LINE L1 6112 6324 -9 247 216 122 0 chr1 276121318 276121392 -6072272 + L1MEd LINE L1 588 670 -5449 1774 167 6 28 chr1 276121689 276122007 -6071657 + AluJb SINE Alu 1 311 -1 319 229 42 51 chr1 276122020 276122138 -6071526 + L1MEd LINE L1 964 1080 -5039 366 317 82 68 chr1 276122431 276123238 -6070426 + HAL1 LINE L1 115 932 -1575 481 378 111 7 chr1 276123246 276123696 -6069968 + L1ME3A LINE L1 4816 5312 -834 1169 271 181 45 chr1 276123696 276123871 -6069793 + L2 LINE L2 1566 1716 -1597 2414 86 0 0 chr1 276123871 276124163 -6069501 + AluSg SINE Alu 1 292 -18 1169 271 181 45 chr1 276124163 276125514 -6068150 + L2 LINE L2 1716 3313 0 484 300 78 0 chr1 276126890 276127060 -6066604 - MIR3 SINE MIR -13 195 11 2191 109 62 14 chr1 276127512 276127870 -6065794 - THE1C LTR MaLR 0 375 1 454 326 59 0 chr1 276128373 276128508 -6065156 + L2 LINE L2 3127 3269 -3 24 0 0 0 chr1 276128653 276128677 -6064987 + AT_rich Low_complexity Low_complexity 1 24 0 2393 170 21 9 chr1 276128683 276129112 -6064552 - Tigger2a DNA MER2_type 0 434 1 512 214 62 24 chr1 276129151 276129331 -6064333 - MLT1I LTR MaLR -3 406 244 1796 228 40 7 chr1 276129701 276130153 -6063511 - MLT1C LTR MaLR 0 467 1 724 324 21 18 chr1 276130346 276130676 -6062988 + MLT1I LTR MaLR 4 334 -75 456 305 62 29 chr1 276130696 276130968 -6062696 + L1ME3A LINE L1 5597 5877 -293 531 154 39 0 chr1 276131303 276131433 -6062231 + (TA)n Simple_repeat Simple_repeat 2 136 0 520 68 68 19 chr1 276131433 276131595 -6062069 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 263 344 69 0 chr1 276132334 276132552 -6061112 - HAL1 LINE L1 -860 1647 1415 595 272 86 48 chr1 276132602 276132723 -6060941 - L1MEd LINE L1 -4918 1201 1086 1899 141 18 0 chr1 276132723 276132880 -6060784 - AluSx SINE Alu -24 288 122 297 0 0 0 chr1 276132880 276132913 -6060751 + (TG)n Simple_repeat Simple_repeat 2 34 0 1899 141 18 0 chr1 276132913 276133038 -6060626 - AluSx SINE Alu -190 122 1 595 272 86 48 chr1 276133038 276133452 -6060212 - L1MEd LINE L1 -5033 1086 646 820 237 0 24 chr1 276133656 276133825 -6059839 + FAM SINE Alu 1 165 -10 187 306 47 12 chr1 276135080 276135165 -6058499 - L2 LINE L2 -220 3052 2965 189 0 0 0 chr1 276135246 276135267 -6058397 + (T)n Simple_repeat Simple_repeat 1 21 0 236 122 41 0 chr1 276135395 276135444 -6058220 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 605 241 89 67 chr1 276136219 276136541 -6057123 + L1M4 LINE L1 3775 4111 -2035 2290 120 0 0 chr1 276136541 276136850 -6056814 + AluSx SINE Alu 1 309 -3 605 241 89 67 chr1 276136850 276136987 -6056677 + L1M4 LINE L1 4111 4244 -1902 34 42 0 0 chr1 276137228 276137276 -6056388 + AT_rich Low_complexity Low_complexity 1 48 0 897 242 62 22 chr1 276137469 276137696 -6055968 - MIR SINE MIR -26 236 1 204 351 68 0 chr1 276138391 276138465 -6055199 - L2 LINE L2 -20 3293 3215 891 114 0 38 chr1 276138465 276138597 -6055067 + AluSq/x SINE Alu 1 127 -186 563 314 32 26 chr1 276138669 276138981 -6054683 - MER102b DNA MER1_type -2 339 26 488 78 0 0 chr1 276139316 276139380 -6054284 - Alu SINE Alu -254 64 1 871 235 14 32 chr1 276139381 276139598 -6054066 + L2 LINE L2 2151 2363 -951 2393 101 0 0 chr1 276139598 276139905 -6053759 + AluSx SINE Alu 1 307 -5 2135 122 3 3 chr1 276139907 276140202 -6053462 + AluSc SINE Alu 1 295 -14 450 275 0 38 chr1 276141152 276141283 -6052381 - MIR SINE MIR -20 242 117 261 0 0 0 chr1 276143593 276143622 -6050042 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr1 276144041 276144063 -6049601 + (A)n Simple_repeat Simple_repeat 1 22 0 391 304 34 27 chr1 276145466 276145614 -6048050 - MER117 DNA MER1_type -48 149 1 415 264 132 0 chr1 276146144 276146303 -6047361 - MIR SINE MIR -2 260 81 668 265 29 29 chr1 276147319 276147523 -6046141 - MIR SINE MIR -46 216 13 641 159 147 32 chr1 276147667 276147824 -6045840 + MLT1B LTR MaLR 1 175 -215 788 256 0 0 chr1 276147827 276147991 -6045673 + FRAM SINE Alu 1 164 -2 864 142 23 6 chr1 276148012 276148188 -6045476 + GA-rich Low_complexity Low_complexity 1 179 0 981 114 105 68 chr1 276148190 276148409 -6045255 + MLT1B LTR MaLR 164 390 0 3065 275 83 17 chr1 276148573 276150592 -6043072 + L1MEc LINE L1 1933 4052 -2163 21 36 0 0 chr1 276150703 276150731 -6042933 + AT_rich Low_complexity Low_complexity 1 28 0 258 246 18 0 chr1 276150741 276150798 -6042866 + MLT1D LTR MaLR 1 58 -447 * 519 223 14 27 chr1 276150797 276150945 -6042719 - LTR16A LTR ERVL -288 162 17 2058 130 0 17 chr1 276151973 276152273 -6041391 + AluSx SINE Alu 1 295 -17 2039 128 10 0 chr1 276152902 276153198 -6040466 + AluSq SINE Alu 1 299 -14 42 98 0 0 chr1 276153571 276153704 -6039960 + AT_rich Low_complexity Low_complexity 1 133 0 4751 158 106 39 chr1 276154412 276154884 -6038780 + LTR28 LTR ERV1 1 440 -580 2149 87 3 28 chr1 276154884 276155173 -6038491 + AluSp SINE Alu 2 283 -30 4751 158 106 39 chr1 276155173 276155656 -6038008 + LTR28 LTR ERV1 440 1020 0 292 203 51 76 chr1 276155882 276155961 -6037703 - L2 LINE L2 -3 3269 3193 233 327 69 19 chr1 276155994 276156153 -6037511 + L2 LINE L2 2927 3093 -179 404 289 118 77 chr1 276156167 276156684 -6036980 + L2 LINE L2 2508 3053 -219 583 279 71 50 chr1 276156907 276157247 -6036417 - L2 LINE L2 -560 2754 2408 1732 180 108 21 chr1 276158087 276158515 -6035149 - MLT1C LTR MaLR 0 467 3 1041 181 57 19 chr1 276159379 276159589 -6034075 - MER20 DNA MER1_type 0 219 2 1808 164 126 33 chr1 276159763 276160034 -6033630 - LOR1b LTR ERV1 0 461 136 2130 120 0 10 chr1 276160034 276160333 -6033331 - AluSx SINE Alu -16 296 1 1808 164 126 33 chr1 276160333 276160483 -6033181 - LOR1b LTR ERV1 -325 136 1 226 333 35 69 chr1 276160562 276160706 -6032958 - L2 LINE L2 -244 3069 2931 4416 178 63 15 chr1 276161057 276162061 -6031603 - L1MA10 LINE L1 -40 6294 5243 259 314 78 33 chr1 276164174 276164327 -6029337 + MIR3 SINE MIR 36 195 -13 13915 191 36 6 chr1 276165362 276171859 -6021805 - L1PB1 LINE L1 -1 6866 8 3127 117 17 0 chr1 276171959 276172431 -6021233 - L1PB1 LINE L1 -5 6146 5667 363 319 74 0 chr1 276172552 276172687 -6020977 + L2 LINE L2 2902 3046 -226 210 348 0 14 chr1 276172687 276172756 -6020908 + L2 LINE L2 3011 3078 -194 1887 179 79 37 chr1 276172784 276173302 -6020362 - LTR55 LTR ERV -8 540 1 267 73 55 0 chr1 276173929 276173984 -6019680 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1717 176 31 17 chr1 276174080 276174438 -6019226 - MLT1A1 LTR MaLR 0 365 3 205 273 131 81 chr1 276174641 276174740 -6018924 - MER5A DNA MER1_type 0 189 86 2223 118 0 3 chr1 276175159 276175465 -6018199 - AluSg SINE Alu -5 305 1 414 281 189 0 chr1 276177245 276177398 -6016266 - MER5A DNA MER1_type -6 183 2 248 275 50 0 chr1 276177632 276177712 -6015952 - L1ME LINE L1 -268 5902 5819 406 292 110 42 chr1 276177714 276177814 -6015850 + L1MC/D LINE L1 4920 5012 -1447 2384 93 0 6 chr1 276177814 276178126 -6015538 + AluSg SINE Alu 1 310 0 406 292 110 42 chr1 276178126 276178694 -6014970 + L1MC/D LINE L1 5012 5638 -821 24 0 0 0 chr1 276178725 276178749 -6014915 + AT_rich Low_complexity Low_complexity 1 24 0 1894 141 30 7 chr1 276279083 276279388 -5914276 - AluJo SINE Alu 0 312 1 506 290 102 60 chr1 276279708 276280111 -5913553 + L2 LINE L2 2844 3263 -50 26 64 0 0 chr1 276280255 276280302 -5913362 + AT_rich Low_complexity Low_complexity 1 47 0 2212 105 3 6 chr1 276280520 276280833 -5912831 - AluSp SINE Alu -1 312 1 2164 171 0 35 chr1 276281178 276281582 -5912082 - MLT1B LTR MaLR 0 390 1 300 274 67 73 chr1 276281769 276281848 -5911816 + MER5B DNA MER1_type 1 79 -99 3510 112 4 10 chr1 276281848 276282348 -5911316 - LOR1a LTR ERV1 0 497 1 300 274 67 73 chr1 276282348 276282363 -5911301 + MER5B DNA MER1_type 79 93 -85 2295 77 23 0 chr1 276282363 276282663 -5911001 + AluYb8 SINE Alu 1 307 -11 300 274 67 73 chr1 276282663 276282746 -5910918 + MER5B DNA MER1_type 93 178 0 273 303 40 30 chr1 276282969 276283068 -5910596 - L2 LINE L2 -6 3266 3167 315 0 0 0 chr1 276283472 276283507 -5910157 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr1 276284657 276284678 -5908986 + AT_rich Low_complexity Low_complexity 1 21 0 403 276 94 17 chr1 276285467 276285648 -5908016 + L1MCc LINE L1 18 212 -6211 1572 177 7 27 chr1 276285771 276286070 -5907594 + AluJo SINE Alu 1 293 -19 181 300 0 20 chr1 276286201 276286251 -5907413 - MIR SINE MIR -67 141 93 2626 151 20 11 chr1 276286485 276286929 -5906735 + LOR1a LTR ERV1 1 448 -49 960 135 0 0 chr1 276286981 276287122 -5906542 - AluJb SINE Alu -171 141 1 460 154 0 0 chr1 276287123 276287188 -5906476 + LOR1b LTR ERV1 397 461 0 39 50 0 0 chr1 276287321 276287381 -5906283 + AT_rich Low_complexity Low_complexity 1 60 0 1893 140 7 0 chr1 276287635 276287920 -5905744 + AluSx SINE Alu 9 295 -17 2861 144 19 20 chr1 276288013 276288500 -5905164 + LTR45B LTR ERV1 2 487 -2 1909 125 7 0 chr1 276288619 276288937 -5904727 + AluSx SINE Alu 1 320 0 627 295 19 38 chr1 276288943 276289153 -5904511 - MIR SINE MIR -48 214 9 1985 151 0 0 chr1 276289444 276289748 -5903916 + AluSx SINE Alu 1 304 -8 389 284 50 46 chr1 276290293 276290554 -5903110 - L1MC5 LINE L1 -120 7841 7580 441 230 18 97 chr1 276290655 276290719 -5902945 + MER103 DNA DNA 8 75 -91 2387 48 3 0 chr1 276290719 276291014 -5902650 - AluY SINE Alu -15 296 1 441 230 18 97 chr1 276291014 276291114 -5902550 + MER103 DNA DNA 75 159 -7 786 257 85 67 chr1 276292631 276293034 -5900630 - L1MC4 LINE L1 0 8042 7625 2065 123 0 3 chr1 276293034 276293335 -5900329 - AluSx SINE Alu -12 300 1 786 257 85 67 chr1 276293335 276293472 -5900192 - L1MC4 LINE L1 -417 7625 7492 2803 167 50 52 chr1 276293582 276293822 -5899842 + L1MB8 LINE L1 5546 5785 -393 2116 116 3 3 chr1 276293822 276294124 -5899540 + AluSx SINE Alu 6 307 -5 2803 167 50 52 chr1 276294124 276294517 -5899147 + L1MB8 LINE L1 5785 6178 0 236 335 75 21 chr1 276294530 276294769 -5898895 - L1MC4a LINE L1 -430 7378 7127 257 253 105 32 chr1 276294843 276294938 -5898726 - MIR SINE MIR -64 144 43 205 293 0 53 chr1 276295076 276295151 -5898513 - L2 LINE L2 -207 3065 2995 704 250 193 0 chr1 276295255 276295467 -5898197 + MIR SINE MIR 5 257 -5 501 324 24 29 chr1 276295612 276295819 -5897845 + MIR3 SINE MIR 3 208 0 1044 210 58 5 chr1 276296004 276296228 -5897436 + MER8 DNA MER2_type 4 239 0 2360 64 10 0 chr1 276296278 276296575 -5897089 - AluY SINE Alu -11 300 1 237 65 0 0 chr1 276297001 276297032 -5896632 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 1562 177 19 0 chr1 276297033 276297304 -5896360 - AluJo SINE Alu -31 281 6 293 296 0 0 chr1 276297313 276297384 -5896280 + L2 LINE L2 3227 3297 -16 711 286 78 0 chr1 276297413 276297605 -5896059 - MLT1F1 LTR MaLR -334 233 27 261 0 0 0 chr1 276297605 276297634 -5896030 + (TG)n Simple_repeat Simple_repeat 2 30 0 1394 138 0 0 chr1 276297634 276297844 -5895820 - AluSg/x SINE Alu -6 306 97 1962 125 0 24 chr1 276297849 276298144 -5895520 + AluSc SINE Alu 1 288 -21 297 0 0 0 chr1 276298149 276298182 -5895482 + (CA)n Simple_repeat Simple_repeat 2 34 0 588 234 0 0 chr1 276298182 276298289 -5895375 + MLT1F1 LTR MaLR 27 133 -434 696 177 40 0 chr1 276298293 276298417 -5895247 + AluJo SINE Alu 6 134 -178 1819 210 113 7 chr1 276298435 276298844 -5894820 + MLT1F1 LTR MaLR 116 567 0 673 234 180 70 chr1 276299534 276299935 -5893729 - MLT1J1 LTR MaLR -1 445 1 223 194 237 32 chr1 276300126 276300219 -5893445 + L2 LINE L2 3136 3247 -25 1633 174 4 0 chr1 276300331 276300601 -5893063 + AluJo SINE Alu 14 284 -28 2323 60 0 38 chr1 276300831 276301145 -5892519 + AluY SINE Alu 1 302 -9 396 392 62 6 chr1 276301200 276301376 -5892288 + MIR3 SINE MIR 20 205 -3 270 246 18 18 chr1 276301395 276301452 -5892212 + L3 LINE CR1 1420 1476 -101 622 269 47 59 chr1 276301453 276301709 -5891955 - MIR SINE MIR -2 260 8 2068 123 0 0 chr1 276301749 276302051 -5891613 - AluSx SINE Alu -10 302 1 2178 82 41 0 chr1 276302100 276302393 -5891271 + AluY SINE Alu 1 305 -6 1341 177 43 20 chr1 276302659 276302845 -5890819 - AluJb SINE Alu 0 312 115 222 62 0 0 chr1 276302845 276302877 -5890787 + (TTAG)n Simple_repeat Simple_repeat 1 32 0 1341 177 43 20 chr1 276302877 276302995 -5890669 - AluJb SINE Alu -197 115 1 573 327 75 26 chr1 276303136 276303362 -5890302 + MIR SINE MIR 12 248 -14 1981 132 0 25 chr1 276303452 276303770 -5889894 + AluSx SINE Alu 1 310 -2 1365 195 0 11 chr1 276304556 276304823 -5888841 + AluJo SINE Alu 30 293 -19 31 26 0 0 chr1 276304823 276304861 -5888803 + AT_rich Low_complexity Low_complexity 1 38 0 2165 100 0 0 chr1 276305067 276305366 -5888298 + AluSq SINE Alu 1 299 -14 2056 103 17 10 chr1 276306653 276306955 -5886709 + AluSq SINE Alu 1 304 -9 4011 101 32 52 chr1 276307962 276308619 -5885045 + LTR9B LTR ERV1 1 644 0 589 235 82 35 chr1 276308720 276308890 -5884774 + MLT1K LTR MaLR 395 572 -16 304 390 39 22 chr1 276309035 276309217 -5884447 - MER5A DNA MER1_type -3 186 2 285 308 25 33 chr1 276309540 276309660 -5884004 - MIR SINE MIR -124 138 20 4808 99 43 37 chr1 276309902 276310254 -5883410 + MER4E LTR ERV1 1 350 -429 2096 114 0 7 chr1 276310254 276310552 -5883112 - AluSg SINE Alu -14 296 1 4808 99 43 37 chr1 276310552 276310974 -5882690 + MER4E LTR ERV1 350 779 0 418 314 7 20 chr1 276311870 276312023 -5881641 - L1ME LINE L1 -438 5683 5533 351 293 71 37 chr1 276312190 276312362 -5881302 - MIR SINE MIR -74 188 13 1792 227 37 41 chr1 276312527 276312990 -5880674 + MLT1E3 LTR MaLR 161 621 -3 926 179 0 6 chr1 276313132 276313300 -5880364 + FRAM SINE Alu 1 164 -12 342 297 0 0 chr1 276314549 276314640 -5879024 + MIR SINE MIR 64 154 -108 631 240 34 29 chr1 276314865 276315040 -5878624 - MER5B DNA MER1_type 0 178 3 351 0 0 0 chr1 276315608 276315647 -5878017 + (TG)n Simple_repeat Simple_repeat 2 40 0 691 196 177 0 chr1 276316219 276316377 -5877287 + L2 LINE L2 3114 3299 -14 344 181 12 0 chr1 276316381 276316464 -5877200 + GA-rich Low_complexity Low_complexity 4 87 0 236 238 35 116 chr1 276316464 276316636 -5877028 + MIR3 SINE MIR 19 176 -32 1365 229 56 36 chr1 276317098 276317543 -5876121 - LTR37B LTR ERV1 0 468 15 1953 136 0 3 chr1 276317544 276317838 -5875826 - AluSq SINE Alu -20 293 1 2263 87 0 3 chr1 276318452 276318752 -5874912 - AluSx SINE Alu -13 299 1 282 257 128 121 chr1 276319484 276319586 -5874078 + MIR SINE MIR 6 106 -156 2319 103 103 23 chr1 276319586 276319917 -5873747 + MSTA LTR MaLR 1 371 -57 2104 109 0 32 chr1 276319917 276320230 -5873434 - AluSg SINE Alu -7 303 1 2319 103 103 23 chr1 276320230 276320294 -5873370 + MSTA LTR MaLR 371 428 0 282 257 128 121 chr1 276320294 276320440 -5873224 + MIR SINE MIR 106 256 -6 327 262 92 35 chr1 276320661 276320802 -5872862 + L2 LINE L2 3123 3271 -1 316 246 42 70 chr1 276321468 276321610 -5872054 - MIR SINE MIR -78 184 47 495 265 61 20 chr1 276322778 276322925 -5870739 - MIR SINE MIR -64 198 46 3611 173 28 66 chr1 276322932 276323246 -5870418 - LTR39 LTR ERV1 -1 782 457 1956 151 0 0 chr1 276323246 276323545 -5870119 + AluSx SINE Alu 1 299 -13 3611 173 28 66 chr1 276323545 276323847 -5869817 - LTR39 LTR ERV1 -326 457 198 922 34 25 0 chr1 276323847 276323965 -5869699 - L1PA4 LINE L1 -1 6154 6034 3611 173 28 66 chr1 276323965 276324100 -5869564 - LTR39 LTR ERV1 -585 198 59 560 278 128 32 chr1 276324600 276324881 -5868783 - L2 LINE L2 -11 3302 2995 2062 94 0 21 chr1 276325121 276325432 -5868232 + AluSg SINE Alu 1 305 0 257 340 10 29 chr1 276325436 276325539 -5868125 + LTR33 LTR ERVL 66 166 -355 448 242 125 0 chr1 276325624 276325752 -5867912 + LTR33 LTR ERVL 378 521 0 704 273 30 56 chr1 276326045 276326276 -5867388 + MIR SINE MIR 28 252 -10 2119 143 0 0 chr1 276327208 276327509 -5866155 - AluSc SINE Alu -8 301 1 534 327 49 29 chr1 276327555 276327861 -5865803 + L2 LINE L2 2564 2875 -439 599 241 56 113 chr1 276327997 276328285 -5865379 - MLT1H LTR MaLR -167 375 109 2304 85 3 28 chr1 276328285 276328604 -5865060 - AluY SINE Alu 0 311 1 599 241 56 113 chr1 276328604 276328650 -5865014 - MLT1H LTR MaLR -433 109 62 183 129 0 0 chr1 276329115 276329146 -5864518 + (CAA)n Simple_repeat Simple_repeat 2 32 0 613 231 142 5 chr1 276331373 276331657 -5862007 + MLT1I LTR MaLR 35 406 -3 261 57 0 0 chr1 276332570 276332605 -5861059 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2260 110 3 7 chr1 276332634 276332944 -5860720 - AluSg SINE Alu -1 309 1 323 247 14 14 chr1 276333272 276333345 -5860319 + L3 LINE CR1 558 630 -947 2152 129 7 3 chr1 276334608 276334910 -5858754 + AluSx SINE Alu 1 303 -9 1350 198 18 42 chr1 276334967 276335250 -5858414 + AluJo SINE Alu 24 299 -13 2159 130 0 0 chr1 276335381 276335682 -5857982 + AluSx SINE Alu 1 301 -11 388 308 163 18 chr1 276336107 276336334 -5857330 - MIR SINE MIR -1 261 2 348 257 59 96 chr1 276336342 276336535 -5857129 + L3 LINE CR1 661 844 -733 2151 96 4 0 chr1 276336535 276336840 -5856824 + AluSg SINE Alu 1 306 0 348 257 59 96 chr1 276336840 276336917 -5856747 + L3 LINE CR1 844 922 -655 315 217 152 0 chr1 276336934 276337026 -5856638 - LTR33 LTR ERVL -2 519 414 2112 153 54 35 chr1 276337027 276337178 -5856486 + MSTB1 LTR MaLR 1 148 -248 2236 99 0 3 chr1 276337178 276337472 -5856192 - AluSq SINE Alu -16 297 5 2112 153 54 35 chr1 276337472 276337722 -5855942 + MSTB1 LTR MaLR 148 368 -28 225 0 0 0 chr1 276337722 276337747 -5855917 + (CA)n Simple_repeat Simple_repeat 2 26 0 2112 153 54 35 chr1 276337747 276337777 -5855887 + MSTB1 LTR MaLR 368 396 0 490 278 47 24 chr1 276337899 276338068 -5855596 - LTR33 LTR ERVL -348 173 1 330 317 168 52 chr1 276338079 276338638 -5855026 + L3 LINE CR1 944 1567 -10 301 239 195 9 chr1 276339187 276339300 -5854364 + L1ME4a LINE L1 5984 6117 -4 284 339 54 0 chr1 276339977 276340089 -5853575 - MER5B DNA MER1_type -60 118 1 1164 227 123 10 chr1 276341032 276341332 -5852332 + MLT1C LTR MaLR 134 467 0 287 315 22 0 chr1 276341336 276341428 -5852236 - MIR SINE MIR -87 175 82 346 343 162 11 chr1 276341607 276341878 -5851786 + L2 LINE L2 2890 3201 -112 826 187 113 18 chr1 276341887 276342127 -5851537 + AluJb SINE Alu 1 306 -6 327 130 0 0 chr1 276342924 276342978 -5850686 + (TG)n Simple_repeat Simple_repeat 1 54 0 206 128 26 0 chr1 276343138 276343177 -5850487 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 946 218 0 29 chr1 276343199 276343373 -5850291 - FAM SINE Alu -3 172 4 6059 99 27 1 chr1 276343444 276344309 -5849355 + L1PA14 LINE L1 5275 6161 0 2166 116 0 16 chr1 276344446 276344764 -5848900 + AluSq SINE Alu 1 313 0 189 274 74 32 chr1 276345237 276345332 -5848332 + L2 LINE L2 3215 3313 0 532 322 94 48 chr1 276345423 276345961 -5847703 + L2 LINE L2 2716 3271 -1 942 335 43 26 chr1 276347085 276347476 -5846188 + MLT1E LTR MaLR 22 419 -174 699 297 95 45 chr1 276347577 276348042 -5845622 + L1ME3A LINE L1 347 834 -5285 281 233 194 0 chr1 276348717 276348820 -5844844 - L2 LINE L2 -871 2443 2321 254 246 55 55 chr1 276349215 276349325 -5844339 + MER65B LTR ERV1 266 375 -156 232 347 7 14 chr1 276349440 276349584 -5844080 - L1M4 LINE L1 -2480 3666 3524 1124 293 70 13 chr1 276349748 276350407 -5843257 + L2 LINE L2 2616 3309 -4 537 222 37 32 chr1 276350407 276350596 -5843068 + L1ME3A LINE L1 3777 3966 -2163 258 292 120 16 chr1 276350593 276350785 -5842879 + L1ME3A LINE L1 4488 4699 -1430 * 1909 224 37 26 chr1 276350982 276351472 -5842192 + MLT1D LTR MaLR 1 495 -10 1169 284 105 23 chr1 276351472 276352510 -5841154 + L1ME3A LINE L1 4906 6010 -94 31 44 0 0 chr1 276352802 276352847 -5840817 + AT_rich Low_complexity Low_complexity 1 45 0 2366 121 29 42 chr1 276352931 276353311 -5840353 - THE1C LTR MaLR 0 375 1 509 57 101 0 chr1 276354335 276354493 -5839171 + (TA)n Simple_repeat Simple_repeat 1 174 0 208 83 115 0 chr1 276354508 276354604 -5839060 + (TA)n Simple_repeat Simple_repeat 2 108 0 2547 57 0 0 chr1 276354739 276355038 -5838626 - AluY SINE Alu -12 299 1 42 65 0 0 chr1 276355110 276355187 -5838477 + AT_rich Low_complexity Low_complexity 1 77 0 269 169 17 0 chr1 276356547 276356606 -5837058 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 569 146 0 0 chr1 276356645 276356741 -5836923 + L1MA5 LINE L1 6200 6295 -5 209 139 23 0 chr1 276356881 276356924 -5836740 + (TA)n Simple_repeat Simple_repeat 1 44 0 516 257 0 9 chr1 276357199 276357312 -5836352 + L2 LINE L2 3197 3308 -5 475 374 51 30 chr1 276357323 276357871 -5835793 + L2 LINE L2 2710 3270 -2 1864 174 13 0 chr1 276358034 276358333 -5835331 + AluJb SINE Alu 1 303 -9 2198 218 154 41 chr1 276359337 276359493 -5834171 + L1M1 LINE L1 2541 2678 -4889 1036 122 41 25 chr1 276359493 276359689 -5833975 + L1MA5 LINE L1 6101 6299 -1 2198 218 154 41 chr1 276359689 276360459 -5833205 + L1M1 LINE L1 2678 3496 -4071 21 36 0 0 chr1 276360586 276360614 -5833050 + AT_rich Low_complexity Low_complexity 1 28 0 353 246 109 36 chr1 276361001 276361111 -5832553 - L2 LINE L2 -1 3312 3195 1974 133 0 0 chr1 276361235 276361505 -5832159 - AluSx SINE Alu -42 270 1 271 260 39 84 chr1 276361946 276362052 -5831612 - L2 LINE L2 -5 3308 3210 2250 114 0 0 chr1 276362052 276362351 -5831313 - AluSq SINE Alu -14 299 1 271 260 39 84 chr1 276362351 276362398 -5831266 - L2 LINE L2 -103 3210 3162 1882 106 3 65 chr1 276362833 276363126 -5830538 - AluSx SINE Alu -1 311 37 785 117 0 18 chr1 276363128 276363239 -5830425 - FLAM_C SINE Alu -6 137 29 726 158 0 0 chr1 276363243 276363344 -5830320 + FLAM_C SINE Alu 3 103 -40 963 223 24 0 chr1 276363345 276363451 -5830213 + L1M2 LINE L1 1967 2069 -4780 2187 94 3 41 chr1 276363451 276363769 -5829895 + AluSg SINE Alu 1 306 -4 963 223 24 0 chr1 276363769 276364217 -5829447 + L1M2 LINE L1 2069 2623 -4226 460 144 13 8 chr1 276364224 276364455 -5829209 + AluSq SINE Alu 5 313 0 2251 110 0 0 chr1 276367537 276367845 -5825819 - AluSg SINE Alu -2 308 1 338 308 123 89 chr1 276369629 276370415 -5823249 - L1M2 LINE L1 -5610 1239 427 2565 131 64 19 chr1 276372082 276372502 -5821162 - MER1A DNA MER1_type -90 439 1 416 196 0 135 chr1 276372773 276372921 -5820743 - LTR41 LTR ERVL -6 767 640 1493 187 42 11 chr1 276372924 276373208 -5820456 + AluJb SINE Alu 1 293 -19 296 265 12 12 chr1 276373342 276373425 -5820239 + L1ME LINE L1 5483 5565 -556 482 234 9 19 chr1 276373458 276373565 -5820099 - FLAM_C SINE Alu -27 116 11 1695 174 0 7 chr1 276373801 276374099 -5819565 - AluJo SINE Alu -16 296 1 416 211 39 48 chr1 276374205 276374309 -5819355 + MER8 DNA MER2_type 1 103 -136 1074 182 0 5 chr1 276374309 276374496 -5819168 + AluJb SINE Alu 117 302 -10 1376 200 38 3 chr1 276375074 276375364 -5818300 + AluJo SINE Alu 9 308 -4 267 233 169 21 chr1 276375418 276375607 -5818057 - Charlie1 DNA MER1_type -6 2755 2539 2058 125 3 7 chr1 276375650 276375945 -5817719 - AluSq SINE Alu -15 298 5 1330 221 10 10 chr1 276376103 276376401 -5817263 - AluJo SINE Alu -14 298 1 629 224 0 0 chr1 276376425 276376541 -5817123 - FLAM_C SINE Alu -19 124 9 1255 233 93 76 chr1 276376647 276377288 -5816376 + L2 LINE L2 2458 3100 -213 1647 175 23 13 chr1 276377289 276377463 -5816201 - AluJo SINE Alu 0 312 132 2126 99 0 10 chr1 276377463 276377775 -5815889 - AluSq SINE Alu 0 313 1 1647 175 23 13 chr1 276377775 276377909 -5815755 - AluJo SINE Alu -180 132 1 1583 169 25 80 chr1 276377912 276378274 -5815390 - MLT1D LTR MaLR -2 503 162 601 239 8 0 chr1 276378274 276378408 -5815256 + FLAM_C SINE Alu 2 136 -7 698 217 0 0 chr1 276378413 276378533 -5815131 + FLAM_A SINE Alu 1 120 -13 997 181 3 118 chr1 276378533 276378821 -5814843 + AluJb SINE Alu 45 299 -13 314 232 10 91 chr1 276378821 276378920 -5814744 + MER21B LTR ERV1 16 106 -757 * 2612 240 47 37 chr1 276378918 276379327 -5814337 + MER21B LTR ERV1 19 423 -440 1450 194 3 40 chr1 276379327 276379631 -5814033 - AluJb SINE Alu -18 294 2 2612 240 47 37 chr1 276379631 276379701 -5813963 + MER21B LTR ERV1 423 491 -372 1500 208 0 3 chr1 276379701 276380004 -5813660 + AluJo SINE Alu 1 302 -10 2612 240 47 37 chr1 276380004 276380249 -5813415 + MER21B LTR ERV1 491 751 -112 308 347 41 0 chr1 276380412 276380533 -5813131 + MIR SINE MIR 73 198 -64 186 250 136 15 chr1 276380770 276380902 -5812762 + L2 LINE L2 2914 3061 -211 665 139 28 0 chr1 276381200 276381308 -5812356 - AluJb SINE Alu -8 304 194 707 197 0 0 chr1 276381349 276381466 -5812198 + FLAM_C SINE Alu 9 125 -18 2998 125 9 2 chr1 276381479 276381911 -5811753 - MER1A DNA MER1_type -39 490 56 1773 151 0 3 chr1 276382277 276382562 -5811102 + AluJb SINE Alu 11 294 -18 24 53 0 0 chr1 276382564 276382602 -5811062 + AT_rich Low_complexity Low_complexity 1 38 0 2202 98 3 0 chr1 276382602 276382897 -5810767 + AluSp SINE Alu 1 296 -17 1582 186 0 13 chr1 276382983 276383290 -5810374 + AluJb SINE Alu 1 303 -9 262 306 48 61 chr1 276383651 276383880 -5809784 + L2 LINE L2 2836 3061 -211 224 269 129 11 chr1 276383907 276384000 -5809664 + L2 LINE L2 3183 3286 -27 342 158 28 154 chr1 276384047 276384223 -5809441 + MLT1D LTR MaLR 60 213 -292 1291 235 0 14 chr1 276384224 276384518 -5809146 + AluJo SINE Alu 5 294 -18 1429 156 124 25 chr1 276384771 276385046 -5808618 + AluJo SINE Alu 1 302 0 598 201 0 122 chr1 276385059 276385161 -5808503 - AluJo SINE Alu -145 167 54 1729 146 22 4 chr1 276385161 276385435 -5808229 + AluSx SINE Alu 1 279 -33 312 83 0 0 chr1 276385435 276385483 -5808181 + (CAA)n Simple_repeat Simple_repeat 1 48 0 598 201 0 122 chr1 276385483 276385543 -5808121 - AluJo SINE Alu -256 56 24 491 164 8 102 chr1 276385602 276385633 -5808031 + L1M4 LINE L1 5473 5505 -661 1589 178 10 7 chr1 276385633 276385925 -5807739 + AluJb SINE Alu 1 293 -19 491 164 8 102 chr1 276385925 276386013 -5807651 + L1M4 LINE L1 5505 5589 -577 670 184 0 0 chr1 276386049 276386158 -5807506 - FLAM_A SINE Alu -30 112 4 2719 197 39 35 chr1 276386158 276386778 -5806886 + L1MB8 LINE L1 5552 6173 -5 1481 192 20 20 chr1 276386799 276387101 -5806563 + AluJo SINE Alu 1 302 -10 2007 141 0 3 chr1 276387402 276387708 -5805956 + AluSq SINE Alu 1 305 -8 340 239 11 11 chr1 276387925 276388013 -5805651 - LTR37A LTR ERV1 -99 327 240 1265 239 10 10 chr1 276388158 276388455 -5805209 - AluJo SINE Alu -4 298 2 27 0 0 0 chr1 276388455 276388482 -5805182 + AT_rich Low_complexity Low_complexity 1 27 0 728 203 0 0 chr1 276388482 276388615 -5805049 - FLAM_C SINE Alu 0 133 1 1459 259 80 32 chr1 276388714 276389323 -5804341 + L2 LINE L2 2458 3097 -216 1493 192 10 14 chr1 276389323 276389486 -5804178 - AluJb SINE Alu -13 299 136 2046 100 35 0 chr1 276389486 276389776 -5803888 - AluSg1 SINE Alu -9 300 1 1493 192 10 14 chr1 276389776 276389903 -5803761 - AluJb SINE Alu -176 136 10 1551 191 14 56 chr1 276389924 276390281 -5803383 - MLT1D LTR MaLR -2 503 162 1502 209 0 7 chr1 276390284 276390581 -5803083 + AluJo SINE Alu 5 299 -13 289 231 0 0 chr1 276390581 276390633 -5803031 + MER21B LTR ERV1 16 67 -796 2744 232 79 42 chr1 276390678 276390840 -5802824 + MER21B LTR ERV1 19 174 -689 1941 138 0 3 chr1 276390840 276391136 -5802528 - AluSq SINE Alu -18 295 1 2744 232 79 42 chr1 276391136 276391447 -5802217 + MER21B LTR ERV1 174 472 -391 1690 167 0 10 chr1 276391447 276391752 -5801912 + AluJo SINE Alu 1 302 -10 2744 232 79 42 chr1 276391752 276392036 -5801628 + MER21B LTR ERV1 472 805 -58 7272 103 21 18 chr1 276392053 276393121 -5800543 + MER11C LTR ERVK 1 1071 0 249 302 112 50 chr1 276393176 276393355 -5800309 + MIR SINE MIR 9 198 -64 252 0 0 0 chr1 276393875 276393903 -5799761 + (A)n Simple_repeat Simple_repeat 1 28 0 650 208 0 0 chr1 276394024 276394144 -5799520 - AluJb SINE Alu -8 304 185 1370 226 7 27 chr1 276394146 276394447 -5799217 - AluJo SINE Alu -6 296 2 319 300 17 17 chr1 276394486 276394606 -5799058 + L1MC/D LINE L1 5723 5842 -1966 32 26 0 0 chr1 276394748 276394787 -5798877 + AT_rich Low_complexity Low_complexity 1 39 0 1352 204 29 29 chr1 276394857 276395166 -5798498 + AluJo SINE Alu 3 311 -1 2082 102 7 0 chr1 276395213 276395506 -5798158 + AluSg SINE Alu 1 295 -15 359 281 22 94 chr1 276395568 276395668 -5797996 + L1MC4 LINE L1 5483 5560 -2248 531 171 65 41 chr1 276395668 276395791 -5797873 - FLAM_C SINE Alu -4 129 4 359 281 22 94 chr1 276395791 276395914 -5797750 + L1MC4 LINE L1 5560 5690 -2118 642 165 29 0 chr1 276395956 276396059 -5797605 - U6 snRNA snRNA 0 107 2 562 167 9 65 chr1 276396279 276396387 -5797277 + MER8 DNA MER2_type 4 105 -134 997 138 0 0 chr1 276396398 276396543 -5797121 + AluJb SINE Alu 130 274 -38 1521 204 0 0 chr1 276396964 276397248 -5796416 + AluJb SINE Alu 1 284 -28 363 23 0 0 chr1 276397249 276397293 -5796371 + (CA)n Simple_repeat Simple_repeat 2 45 0 1763 85 0 0 chr1 276397615 276397839 -5795825 + AluSq SINE Alu 3 226 -87 784 206 48 121 chr1 276399556 276399886 -5793778 + L1MC4 LINE L1 6718 7080 -938 352 182 0 0 chr1 276400369 276400435 -5793229 - MSTD LTR MaLR -1 395 330 670 178 0 29 chr1 276400435 276400609 -5793055 + GA-rich Low_complexity Low_complexity 4 172 0 1664 173 88 16 chr1 276400644 276400962 -5792702 - MSTD LTR MaLR -55 341 1 1761 148 0 4 chr1 276402097 276402374 -5791290 + AluSq SINE Alu 1 276 -37 180 0 0 0 chr1 276402379 276402399 -5791265 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 450 164 27 0 chr1 276402609 276402682 -5790982 + AluS SINE Alu 2 76 -237 1633 132 0 12 chr1 276402682 276402939 -5790725 + AluSq SINE Alu 46 299 -14 1657 164 10 7 chr1 276403250 276403549 -5790115 + AluSx SINE Alu 3 302 -10 1965 117 4 0 chr1 276404295 276404576 -5789088 + AluSg SINE Alu 1 282 -28 2121 100 10 0 chr1 276405373 276405672 -5787992 - AluSp SINE Alu -9 304 3 2104 102 3 0 chr1 276405733 276406027 -5787637 + AluSg1 SINE Alu 1 295 -14 1239 152 40 46 chr1 276406717 276407019 -5786645 + AluY SINE Alu 1 300 -11 605 165 83 0 chr1 276407147 276407256 -5786408 + MLT1D LTR MaLR 1 118 -387 914 204 90 9 chr1 276407365 276407576 -5786088 + MLT1D LTR MaLR 276 503 -2 2022 134 0 3 chr1 276407607 276407913 -5785751 + AluSx SINE Alu 1 305 -7 1724 161 14 0 chr1 276408090 276408382 -5785282 - AluSx SINE Alu -15 297 2 1898 113 14 3 chr1 276409171 276409473 -5784191 - AluSq SINE Alu 0 305 1 309 98 0 0 chr1 276410332 276410383 -5783281 - AluSp/q SINE Alu -2 301 251 199 239 30 15 chr1 276410653 276410720 -5782944 - MIR SINE MIR -56 152 85 227 281 16 0 chr1 276411069 276411133 -5782531 - MIR SINE MIR -177 85 21 2124 114 0 13 chr1 276412617 276412753 -5780911 + AluSx SINE Alu 1 137 -175 2223 100 3 0 chr1 276412753 276413054 -5780610 + AluSp SINE Alu 1 302 -11 2124 114 0 13 chr1 276413054 276413224 -5780440 + AluSx SINE Alu 137 303 -9 180 111 0 0 chr1 276413224 276413251 -5780413 + (GA)n Simple_repeat Simple_repeat 1 27 0 2230 88 7 3 chr1 276413458 276413766 -5779898 + AluSx SINE Alu 1 309 -3 195 129 0 0 chr1 276413769 276413800 -5779864 + (GAA)n Simple_repeat Simple_repeat 3 33 0 2097 109 10 0 chr1 276413920 276414213 -5779451 - AluSp SINE Alu -17 296 1 1928 121 0 17 chr1 276414235 276414548 -5779116 + AluSq SINE Alu 1 308 0 252 0 0 0 chr1 276415284 276415312 -5778352 + (CTAG)n Simple_repeat Simple_repeat 1 28 0 905 232 0 5 chr1 276415312 276415519 -5778145 - AluJo SINE Alu -31 281 76 1940 95 11 0 chr1 276415521 276415794 -5777870 - AluSx SINE Alu -35 277 2 563 187 7 79 chr1 276415834 276415973 -5777691 + FLAM_C SINE Alu 5 133 0 941 69 0 30 chr1 276415989 276416120 -5777544 - AluJo SINE Alu -163 149 23 432 188 340 25 chr1 276416162 276416359 -5777305 - AluJo SINE Alu -18 294 36 675 122 0 0 chr1 276416707 276416805 -5776859 + AluSg/x SINE Alu 189 286 -23 314 209 0 0 chr1 276416815 276416882 -5776782 + L1MB8 LINE L1 6106 6172 -6 2202 77 3 3 chr1 276416899 276417196 -5776468 + AluSx SINE Alu 1 297 -15 265 326 11 0 chr1 276417603 276417695 -5775969 - L2 LINE L2 0 3313 3221 446 273 30 23 chr1 276417721 276417853 -5775811 - MLT1I LTR MaLR -50 359 227 506 212 30 8 chr1 276417855 276417987 -5775677 + L1ME2 LINE L1 5764 5898 -266 1549 291 43 23 chr1 276418192 276418639 -5775025 - L2 LINE L2 -157 3156 2719 1943 106 3 14 chr1 276418639 276418951 -5774713 + AluSc SINE Alu 1 309 0 1660 160 3 10 chr1 276418959 276419252 -5774412 + AluJb SINE Alu 1 291 -21 1549 291 43 23 chr1 276419252 276419488 -5774176 - L2 LINE L2 -600 2713 2444 1016 192 23 5 chr1 276419538 276419752 -5773912 + L1M2 LINE L1 5329 5546 -766 621 231 142 5 chr1 276420622 276420906 -5772758 + MLT1I LTR MaLR 35 406 -3 261 57 0 0 chr1 276421819 276421854 -5771810 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2160 107 3 7 chr1 276421883 276422193 -5771471 - AluSg SINE Alu -1 309 1 329 247 14 14 chr1 276422521 276422594 -5771070 + L3 LINE CR1 558 630 -947 2068 130 7 3 chr1 276423857 276424165 -5769499 + AluSx SINE Alu 1 309 -3 571 281 105 36 chr1 276424172 276424592 -5769072 + L1M4 LINE L1 5370 5818 -366 2098 95 10 7 chr1 276425459 276425764 -5767900 - AluSc SINE Alu -3 306 1 24 0 0 0 chr1 276425979 276426003 -5767661 + AT_rich Low_complexity Low_complexity 1 24 0 343 257 86 66 chr1 276426360 276426617 -5767047 + LTR16C LTR ERVL 168 429 -62 207 0 0 0 chr1 276426775 276426798 -5766866 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1929 132 10 3 chr1 276427446 276427741 -5765923 + AluSx SINE Alu 1 297 -15 1428 225 89 20 chr1 276427860 276428264 -5765400 + MER69B DNA AcHobo 547 978 -248 1124 85 17 23 chr1 276428265 276428441 -5765223 + L1M2 LINE L1 5342 5516 -775 670 178 0 29 chr1 276428580 276428754 -5764910 + CT-rich Low_complexity Low_complexity 4 172 0 355 182 0 0 chr1 276428754 276428820 -5764844 + MSTD LTR MaLR 330 395 -1 810 206 48 121 chr1 276429303 276429633 -5764031 - L1MC4 LINE L1 -938 7069 6718 1846 85 0 0 chr1 276431350 276431574 -5762090 - AluSq SINE Alu -87 226 3 327 25 0 0 chr1 276431898 276431938 -5761726 + (TG)n Simple_repeat Simple_repeat 2 41 0 1619 204 0 0 chr1 276431939 276432223 -5761441 - AluJb SINE Alu -28 284 1 1058 138 0 0 chr1 276432644 276432789 -5760875 - AluJb SINE Alu -38 274 130 589 168 9 56 chr1 276432800 276432907 -5760757 - MER8 DNA MER2_type -134 105 4 636 165 29 0 chr1 276433127 276433230 -5760434 + U6 snRNA snRNA 2 107 0 358 281 22 94 chr1 276433272 276433395 -5760269 - L1MC4 LINE L1 -2118 5690 5589 522 154 65 65 chr1 276433395 276433518 -5760146 + FLAM_C SINE Alu 4 126 -7 358 281 22 94 chr1 276433518 276433618 -5760046 - L1MC4 LINE L1 -2219 5589 5483 2441 43 7 13 chr1 276433680 276433979 -5759685 - AluSx SINE Alu -15 297 1 1755 164 10 7 chr1 276434724 276435023 -5758641 - AluSx SINE Alu -10 302 3 1656 133 4 12 chr1 276435333 276435588 -5758076 - AluSq SINE Alu -15 298 46 439 162 27 0 chr1 276435588 276435662 -5758002 - AluS SINE Alu -237 76 1 180 0 0 0 chr1 276435871 276435891 -5757773 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2803 143 53 8 chr1 276436001 276436527 -5757137 + L1MA9 LINE L1 5610 6159 -153 928 177 111 87 chr1 276436546 276437014 -5756650 - MER4C LTR ERV1 0 694 184 2201 116 51 23 chr1 276437014 276437368 -5756296 + THE1B LTR MaLR 1 364 0 928 177 111 87 chr1 276437368 276437557 -5756107 - MER4C LTR ERV1 -510 184 1 606 191 22 0 chr1 276437557 276437693 -5755971 + L1MA9 LINE L1 6169 6307 -5 343 299 8 39 chr1 276437730 276437857 -5755807 - L2 LINE L2 -885 2429 2307 1933 121 7 4 chr1 276438303 276438576 -5755088 + AluSg SINE Alu 21 294 -16 232 301 0 0 chr1 276438583 276438656 -5755008 - L1MEc LINE L1 -4753 1631 1559 257 197 16 0 chr1 276438662 276438723 -5754941 - L1MEc LINE L1 -4917 1467 1406 264 250 0 0 chr1 276438724 276438804 -5754860 + T-rich Low_complexity Low_complexity 1 80 0 910 205 58 9 chr1 276438945 276439169 -5754495 - L1MEc LINE L1 -5576 987 753 831 199 6 6 chr1 276439214 276439370 -5754294 + MER58B DNA MER1_type 181 336 -5 450 222 0 51 chr1 276439372 276439489 -5754175 - L1MEc LINE L1 -5802 761 651 1238 284 17 14 chr1 276439495 276439851 -5753813 - L1MEc LINE L1 -5996 567 211 1030 244 43 21 chr1 276439854 276440133 -5753531 - L2 LINE L2 -1006 2308 2024 202 219 47 0 chr1 276442137 276442201 -5751463 + (TA)n Simple_repeat Simple_repeat 2 68 0 3018 115 0 11 chr1 276442258 276442718 -5750946 - L1PB3 LINE L1 -7 6147 5693 196 385 51 17 chr1 276444337 276444454 -5749210 + L2 LINE L2 3136 3256 -16 1998 109 19 0 chr1 276444589 276444856 -5748808 + AluSq SINE Alu 23 294 -19 2141 114 3 3 chr1 276445239 276445528 -5748136 - AluSq SINE Alu -21 292 4 1051 263 104 20 chr1 276446113 276446467 -5747197 + L2 LINE L2 1970 2353 -961 441 310 197 22 chr1 276446483 276446915 -5746749 + L2 LINE L2 2539 3062 -251 1695 178 29 0 chr1 276447022 276447336 -5746328 + AluJb SINE Alu 1 322 0 204 250 132 0 chr1 276447493 276447569 -5746095 + L2 LINE L2 3062 3147 -166 1915 118 40 3 chr1 276447680 276447977 -5745687 + AluSc SINE Alu 1 308 -1 657 298 94 16 chr1 276448092 276448347 -5745317 + L3 LINE CR1 612 886 -691 492 331 224 36 chr1 276448667 276449198 -5744466 + L3 LINE CR1 940 1570 -7 336 325 85 25 chr1 276449282 276449482 -5744182 + MIR SINE MIR 51 262 0 234 283 28 57 chr1 276451264 276451370 -5742294 + MIR SINE MIR 41 143 -65 305 271 0 62 chr1 276451542 276451638 -5742026 + L1MC4 LINE L1 6616 6705 -1337 243 256 47 0 chr1 276451648 276451734 -5741930 + L1MC4 LINE L1 6614 6703 -1339 393 181 76 57 chr1 276451737 276451842 -5741822 + Charlie1 DNA MER1_type 2655 2761 0 256 186 0 34 chr1 276452976 276453035 -5740629 - L1MA9 LINE L1 -38 6274 6218 1277 79 58 16 chr1 276453174 276453363 -5740301 - MER30 DNA MER1_type -33 197 1 942 228 77 27 chr1 276454761 276455059 -5738605 - L1MCa LINE L1 -6094 332 20 21 0 0 0 chr1 276455608 276455629 -5738035 + AT_rich Low_complexity Low_complexity 1 21 0 2307 62 3 13 chr1 276456398 276456704 -5736960 + AluY SINE Alu 1 303 -8 239 291 77 26 chr1 276457820 276457937 -5735727 + L2 LINE L2 3150 3272 0 441 294 20 0 chr1 276458289 276458391 -5735273 + MIR SINE MIR 34 137 -125 271 288 102 25 chr1 276458459 276458577 -5735087 + MIR SINE MIR 124 250 -12 438 210 117 82 chr1 276458805 276459001 -5734663 + MIR SINE MIR 52 262 0 271 284 39 10 chr1 276459807 276459909 -5733755 + MIR SINE MIR 30 134 -74 186 309 0 24 chr1 276460217 276460259 -5733405 + L2 LINE L2 3210 3250 -22 1397 149 149 21 chr1 276460519 276460800 -5732864 + MER7A DNA MER2_type 32 346 0 2123 45 0 8 chr1 276461453 276461720 -5731944 + L1PA3 LINE L1 5888 6152 -3 4226 178 68 57 chr1 276461865 276461916 -5731748 - Looper DNA T2_type 0 1558 1509 6664 98 33 35 chr1 276461916 276462990 -5730674 - MER11C LTR ERVK 0 1071 1 4226 178 68 57 chr1 276462990 276463339 -5730325 - Looper DNA T2_type -49 1509 1165 2312 115 0 0 chr1 276463339 276463644 -5730020 + AluSq SINE Alu 1 305 -8 4226 178 68 57 chr1 276463644 276463918 -5729746 - Looper DNA T2_type -393 1165 895 1757 145 7 27 chr1 276463918 276464215 -5729449 + AluJb SINE Alu 6 296 -16 4226 178 68 57 chr1 276464215 276464706 -5728958 - Looper DNA T2_type -663 895 379 778 228 124 4 chr1 276464707 276464957 -5728707 + MER33 DNA MER1_type 1 280 -44 1551 178 19 7 chr1 276464960 276465230 -5728434 + AluJo SINE Alu 1 273 -39 1328 209 70 0 chr1 276465291 276465635 -5728029 - Looper DNA T2_type -1183 375 8 2157 106 3 32 chr1 276467004 276467316 -5726348 + AluSg SINE Alu 3 305 -5 30 45 0 0 chr1 276467321 276467365 -5726299 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr1 276467899 276467923 -5725741 + AT_rich Low_complexity Low_complexity 1 24 0 2145 85 0 46 chr1 276467932 276468239 -5725425 + AluY SINE Alu 1 293 -18 2160 124 0 6 chr1 276468438 276468752 -5724912 + AluSx SINE Alu 1 312 0 1493 285 61 40 chr1 276468990 276469925 -5723739 - L2 LINE L2 -1 3312 2359 2369 228 138 11 chr1 276470016 276471076 -5722588 - L1MEc LINE L1 -3068 3147 2009 868 139 21 7 chr1 276471179 276471323 -5722341 + MER2 DNA MER2_type 30 175 -170 28 29 0 0 chr1 276472666 276472701 -5720963 + AT_rich Low_complexity Low_complexity 1 35 0 23 42 0 21 chr1 276472753 276472782 -5720882 + AT_rich Low_complexity Low_complexity 1 30 -17 638 206 8 16 chr1 276472782 276472908 -5720756 - FLAM_A SINE Alu -8 125 1 23 42 0 21 chr1 276472908 276472926 -5720738 + AT_rich Low_complexity Low_complexity 30 47 0 426 313 111 57 chr1 276473591 276474170 -5719494 - MLT1L LTR MaLR -1 614 5 804 258 73 9 chr1 276474949 276475182 -5718482 - MIR SINE MIR 0 262 15 22 80 0 0 chr1 276476568 276476618 -5717046 + AT_rich Low_complexity Low_complexity 1 50 0 351 224 48 102 chr1 276477487 276477634 -5716030 - MIR SINE MIR -21 241 103 23 0 0 0 chr1 276480954 276480977 -5712687 + AT_rich Low_complexity Low_complexity 1 23 0 2534 60 0 0 chr1 276481858 276482158 -5711506 - AluY SINE Alu -11 300 1 355 244 176 23 chr1 276482300 276482476 -5711188 + MARNA DNA Mariner 58 260 -326 379 61 0 0 chr1 276486372 276486421 -5707243 - MADE1 DNA Mariner -29 51 3 420 302 17 26 chr1 276486490 276486606 -5707058 + MER5A DNA MER1_type 9 123 -66 264 140 35 18 chr1 276486697 276486754 -5706910 + Charlie7 DNA MER1_type 44 101 -2511 481 302 111 22 chr1 276487090 276487315 -5706349 + MIR SINE MIR 18 262 0 264 239 102 0 chr1 276487530 276487618 -5706046 - MER94 DNA DNA -36 98 2 309 302 65 7 chr1 276488193 276488332 -5705332 - L2 LINE L2 0 3313 3167 200 362 65 8 chr1 276488687 276488885 -5704779 - L2 LINE L2 -340 2973 2715 453 290 96 39 chr1 276488965 276489059 -5704605 - L2 LINE L2 -1009 2305 2218 2039 169 115 24 chr1 276489059 276489478 -5704186 - MSTB2 LTR MaLR 0 457 1 453 290 96 39 chr1 276489478 276489738 -5703926 - L2 LINE L2 -1096 2218 1931 686 204 25 0 chr1 276491300 276491457 -5702207 - L1MB3 LINE L1 -3 6180 6020 483 204 11 21 chr1 276491615 276491708 -5701956 + L2 LINE L2 3222 3313 0 2117 96 10 7 chr1 276492415 276492716 -5700948 + AluSg SINE Alu 1 302 -8 2373 177 12 37 chr1 276492736 276493096 -5700568 - L1MB5 LINE L1 -6 6168 5823 2044 90 69 3 chr1 276493096 276493386 -5700278 - AluSx SINE Alu -3 309 1 2373 177 12 37 chr1 276493386 276493533 -5700131 - L1MB5 LINE L1 -351 5823 5674 2532 53 0 0 chr1 276495336 276495637 -5698027 + AluY SINE Alu 1 301 -10 1573 115 0 0 chr1 276497679 276497887 -5695777 - AluSg/x SINE Alu -13 297 90 2347 78 3 0 chr1 276498001 276498295 -5695369 + AluSp SINE Alu 1 295 -18 2012 141 10 0 chr1 276498709 276499008 -5694656 - AluSx SINE Alu -10 302 1 22 0 0 0 chr1 276499081 276499103 -5694561 + AT_rich Low_complexity Low_complexity 1 22 0 256 314 166 31 chr1 276499443 276499653 -5694011 + MIR SINE MIR 18 252 -10 266 157 11 56 chr1 276499847 276499936 -5693728 + A-rich Low_complexity Low_complexity 2 86 0 2269 87 0 0 chr1 276500560 276500849 -5692815 - AluSx SINE Alu -23 289 1 2231 109 3 0 chr1 276500961 276501255 -5692409 - AluSc SINE Alu -14 295 1 211 213 27 0 chr1 276501737 276501812 -5691852 + CT-rich Low_complexity Low_complexity 2 78 0 32 26 0 0 chr1 276502500 276502539 -5691125 + AT_rich Low_complexity Low_complexity 1 39 0 230 114 0 45 chr1 276502564 276502608 -5691056 - L2 LINE L2 0 3313 3272 1058 173 114 33 chr1 276502791 276503063 -5690601 + L1MA7 LINE L1 5997 6290 -1 1163 112 47 34 chr1 276504530 276504763 -5688901 + L1MA8 LINE L1 6052 6287 -4 1751 164 18 30 chr1 276504992 276505328 -5688336 - MER2 DNA MER2_type -13 332 1 21 0 0 0 chr1 276507285 276507306 -5686358 + AT_rich Low_complexity Low_complexity 1 21 0 308 311 87 0 chr1 276509131 276509234 -5684430 - MIR SINE MIR -76 132 21 756 194 25 31 chr1 276509875 276510035 -5683629 + FRAM SINE Alu 1 156 -20 213 121 0 0 chr1 276510446 276510479 -5683185 + (TCG)n Simple_repeat Simple_repeat 1 33 0 452 306 148 6 chr1 276512006 276512189 -5681475 - MIR SINE MIR -42 220 12 196 233 0 0 chr1 276512406 276512449 -5681215 + MIR SINE MIR 165 207 -55 309 250 135 20 chr1 276512449 276512597 -5681067 + MER112 DNA MER1_type 1 165 -95 443 257 71 21 chr1 276512695 276512835 -5680829 - L2 LINE L2 -31 3282 3136 183 170 85 21 chr1 276512841 276512888 -5680776 + MIR SINE MIR 213 262 0 21 57 0 0 chr1 276513404 276513439 -5680225 + AT_rich Low_complexity Low_complexity 1 35 0 1756 143 66 0 chr1 276513732 276514004 -5679660 - AluSg SINE Alu -18 292 3 26 0 0 0 chr1 276514612 276514638 -5679026 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr1 276514802 276514842 -5678822 + AT_rich Low_complexity Low_complexity 1 40 0 2027 136 0 0 chr1 276514958 276515244 -5678420 + AluSx SINE Alu 1 286 -26 369 0 0 0 chr1 276515244 276515285 -5678379 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 203 139 0 chr1 276515396 276515475 -5678189 + MIR3 SINE MIR 108 197 -11 2144 112 0 13 chr1 276515953 276516266 -5677398 - AluSc SINE Alu 0 309 1 374 314 49 0 chr1 276517535 276517637 -5676027 - L2 LINE L2 -9 3263 3157 21 57 0 0 chr1 276518554 276518589 -5675075 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr1 276520700 276520722 -5672942 + AT_rich Low_complexity Low_complexity 1 22 0 11395 119 30 24 chr1 276521232 276522215 -5671449 - Tigger1 DNA MER2_type 0 2418 1443 2463 84 0 0 chr1 276522215 276522524 -5671140 + AluY SINE Alu 1 309 -2 2498 57 0 0 chr1 276522525 276522823 -5670841 + AluY SINE Alu 1 298 -13 11395 119 30 24 chr1 276522823 276523708 -5669956 - Tigger1 DNA MER2_type -974 1444 536 570 274 126 43 chr1 276524047 276524277 -5669387 + MIR SINE MIR 4 252 -10 21 0 0 0 chr1 276524501 276524522 -5669142 + AT_rich Low_complexity Low_complexity 1 21 0 2229 87 3 0 chr1 276524597 276524883 -5668781 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr1 276526441 276526462 -5667202 + AT_rich Low_complexity Low_complexity 1 21 0 2195 99 7 10 chr1 276526466 276526758 -5666906 - AluSx SINE Alu -21 291 1 2265 79 10 7 chr1 276526858 276527148 -5666516 - AluSq SINE Alu -22 291 1 746 109 0 1 chr1 276528885 276529000 -5664664 - L1PB1 LINE L1 -172 5979 5866 2166 112 0 0 chr1 276529475 276529760 -5663904 + AluSc SINE Alu 1 285 -24 496 223 32 64 chr1 276530679 276530836 -5662828 + MIR SINE MIR 61 212 -50 557 211 10 10 chr1 276530879 276530983 -5662681 + L2 LINE L2 3199 3302 -11 615 175 10 0 chr1 276531195 276531292 -5662372 + FLAM_A SINE Alu 13 110 -32 224 290 189 24 chr1 276531656 276531825 -5661839 + MIR SINE MIR 46 242 -20 1630 202 126 7 chr1 276531839 276532290 -5661374 - Charlie4a DNA MER1_type -3 505 1 1453 188 40 10 chr1 276533510 276533813 -5659851 + MER58B DNA MER1_type 30 341 0 276 210 0 16 chr1 276535267 276535329 -5658335 - Charlie4 DNA MER1_type -1858 103 43 514 260 130 24 chr1 276535354 276535692 -5657972 + L1M4 LINE L1 4989 5362 -784 1949 53 4 12 chr1 276535692 276535936 -5657728 + AluY SINE Alu 47 288 -23 215 220 76 102 chr1 276536464 276536582 -5657082 - MIR3 SINE MIR -25 183 69 382 291 114 29 chr1 276536637 276536852 -5656812 + MIR SINE MIR 10 241 -21 523 178 163 15 chr1 276536956 276537091 -5656573 - LTR37A LTR ERV1 -52 374 220 1823 132 62 31 chr1 276537136 276537492 -5656172 - THE1C LTR MaLR -8 367 1 1624 180 7 89 chr1 276537518 276537608 -5656056 - L1MB8 LINE L1 0 6178 6082 2347 84 0 0 chr1 276537608 276537904 -5655760 - AluSg SINE Alu -14 296 1 1624 180 7 89 chr1 276537904 276538240 -5655424 - L1MB8 LINE L1 -96 6082 5787 2097 123 3 16 chr1 276538974 276539283 -5654381 - AluSx SINE Alu -7 305 1 201 39 0 0 chr1 276539339 276539365 -5654299 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2355 60 0 0 chr1 276539365 276539647 -5654017 - AluY SINE Alu -29 282 1 492 18 0 0 chr1 276539662 276539719 -5653945 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 1628 226 47 45 chr1 276540498 276540985 -5652679 - L1ME1 LINE L1 -131 6035 5548 2330 85 0 7 chr1 276542602 276542907 -5650757 - AluSc SINE Alu -6 303 1 926 223 36 23 chr1 276543195 276543415 -5650249 + MER58A DNA MER1_type 2 224 0 255 224 60 0 chr1 276543567 276543634 -5650030 + MER58B DNA MER1_type 271 341 0 193 342 101 25 chr1 276543709 276543788 -5649876 + L2 LINE L2 3134 3218 -54 2408 74 0 0 chr1 276544892 276545188 -5648476 + AluY SINE Alu 1 296 -15 1496 194 28 18 chr1 276545605 276545888 -5647776 + AluJo SINE Alu 3 288 -24 233 273 91 20 chr1 276546080 276546179 -5647485 - L2 LINE L2 -16 3297 3192 325 303 62 106 chr1 276547098 276547306 -5646358 - L2 LINE L2 -111 3161 2963 217 267 0 0 chr1 276547590 276547635 -5646029 - L2 LINE L2 0 3272 3228 27 29 0 0 chr1 276548767 276548801 -5644863 + AT_rich Low_complexity Low_complexity 1 34 0 1578 138 74 37 chr1 276548889 276549187 -5644477 - AluJb SINE Alu -3 309 1 1598 151 29 63 chr1 276550282 276550633 -5643031 - MER44D DNA MER2_type 0 609 1 2115 129 0 0 chr1 276551530 276551824 -5641840 + AluSx SINE Alu 1 294 -18 22 80 0 0 chr1 276552409 276552459 -5641205 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr1 276554071 276554093 -5639571 + AT_rich Low_complexity Low_complexity 1 22 0 232 239 0 168 chr1 276557429 276557596 -5636068 - MER87 LTR ERV1 -197 344 206 277 276 95 9 chr1 276558117 276558222 -5635442 - MIR SINE MIR -36 226 113 1623 227 49 45 chr1 276559317 276559810 -5633854 + L1ME1 LINE L1 5548 6042 -124 435 38 0 0 chr1 276560585 276560638 -5633026 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 2379 57 0 0 chr1 276560653 276560935 -5632729 + AluY SINE Alu 1 282 -29 201 39 0 0 chr1 276560935 276560961 -5632703 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1991 132 3 16 chr1 276561023 276561326 -5632338 + AluSx SINE Alu 7 305 -7 1608 183 7 89 chr1 276562060 276562396 -5631268 + L1MB8 LINE L1 5787 6082 -96 2347 84 0 0 chr1 276562396 276562692 -5630972 + AluSg SINE Alu 1 296 -14 1608 183 7 89 chr1 276562692 276562782 -5630882 + L1MB8 LINE L1 6082 6178 0 1823 132 62 31 chr1 276562808 276563164 -5630500 + THE1C LTR MaLR 1 367 -8 523 178 163 15 chr1 276563209 276563344 -5630320 + LTR37A LTR ERV1 220 374 -52 405 285 114 29 chr1 276563444 276563659 -5630005 - MIR SINE MIR -21 241 10 215 220 76 102 chr1 276563714 276563832 -5629832 + MIR3 SINE MIR 69 183 -25 2210 91 3 3 chr1 276564360 276564646 -5629018 - AluSc SINE Alu -23 286 1 451 277 0 0 chr1 276565149 276565297 -5628367 + (TA)n Simple_repeat Simple_repeat 2 149 0 1769 176 16 3 chr1 276565364 276565670 -5627994 - AluJo SINE Alu 0 312 3 1437 212 10 14 chr1 276565818 276566111 -5627553 + AluJb SINE Alu 1 292 -20 573 193 57 36 chr1 276566469 276566661 -5627003 - MER69B DNA AcHobo -4 1222 1027 1744 129 37 71 chr1 276566691 276566895 -5626769 - L1MA8 LINE L1 0 6291 6104 2145 128 0 22 chr1 276566895 276567214 -5626450 - AluSx SINE Alu 0 312 1 1744 129 37 71 chr1 276567214 276567389 -5626275 - L1MA8 LINE L1 -187 6104 5925 1660 166 48 3 chr1 276567567 276567857 -5625807 + AluJo SINE Alu 5 307 -5 1023 214 36 5 chr1 276567857 276568077 -5625587 + MER87 LTR ERV1 232 458 -83 2060 112 3 33 chr1 276568100 276568403 -5625261 - AluSq SINE Alu -19 294 1 3423 112 11 60 chr1 276568469 276569086 -5624578 - L1MA8 LINE L1 -363 5928 5342 1428 225 89 20 chr1 276569087 276569491 -5624173 - MER69B DNA AcHobo -248 978 547 2194 120 3 0 chr1 276569610 276569909 -5623755 - AluSx SINE Alu -12 300 1 4752 200 52 26 chr1 276570621 276570952 -5622712 - Charlie1a DNA MER1_type -1547 1214 893 2192 113 3 0 chr1 276570952 276571254 -5622410 + AluSp SINE Alu 1 303 -10 4752 200 52 26 chr1 276571254 276572059 -5621605 - Charlie1a DNA MER1_type -1868 893 49 495 266 45 50 chr1 276572114 276572313 -5621351 + MIR SINE MIR 9 206 -56 400 240 188 70 chr1 276573703 276573990 -5619674 + L1M4c LINE L1 85 405 -5979 642 272 16 25 chr1 276574072 276574315 -5619349 + L1M4c LINE L1 554 794 -5486 514 188 4 14 chr1 276574315 276574567 -5619097 + AluJ SINE Alu 3 304 -8 3087 232 140 29 chr1 276574569 276575398 -5618266 + L1M4c LINE L1 774 1510 -4874 447 106 0 0 chr1 276575398 276575464 -5618200 + (CAT)n Simple_repeat Simple_repeat 1 66 0 3087 232 140 29 chr1 276575464 276576072 -5617592 + L1M4c LINE L1 1510 2370 -4014 285 105 0 0 chr1 276576072 276576110 -5617554 + Alu SINE Alu 2 39 -260 1722 181 9 19 chr1 276576193 276576508 -5617156 - AluJb SINE Alu 0 312 1 197 369 12 12 chr1 276577111 276577195 -5616469 + L2 LINE L2 3189 3272 0 2400 79 0 0 chr1 276577695 276577985 -5615679 + AluY SINE Alu 1 290 -21 234 0 0 0 chr1 276577985 276578011 -5615653 + (TA)n Simple_repeat Simple_repeat 2 27 0 283 261 0 0 chr1 276579112 276579177 -5614487 - MIR SINE MIR -1 261 197 255 297 127 74 chr1 276580298 276580527 -5613137 - MIR SINE MIR -11 251 11 24 0 0 0 chr1 276581453 276581477 -5612187 + AT_rich Low_complexity Low_complexity 1 24 0 842 177 86 6 chr1 276581485 276581660 -5612004 + MER3 DNA MER1_type 1 189 -20 2060 110 0 10 chr1 276581863 276582154 -5611510 + AluSx SINE Alu 1 288 -24 1347 181 11 34 chr1 276582450 276582716 -5610948 + AluJb SINE Alu 40 299 -13 193 385 51 17 chr1 276584042 276584159 -5609505 + L2 LINE L2 3136 3256 -16 2019 109 19 0 chr1 276584294 276584561 -5609103 + AluSq SINE Alu 23 294 -19 2192 113 3 3 chr1 276584944 276585236 -5608428 - AluSq SINE Alu -21 292 1 2242 97 0 7 chr1 276585751 276586051 -5607613 + AluSx SINE Alu 1 298 -14 2437 61 7 0 chr1 276586465 276586761 -5606903 - AluY SINE Alu -13 298 1 2054 135 3 0 chr1 276586947 276587243 -5606421 - AluSx SINE Alu -15 297 1 816 138 54 0 chr1 276587328 276587458 -5606206 + FRAM SINE Alu 1 137 -39 2061 115 0 14 chr1 276587741 276588069 -5605595 - AluSg SINE Alu 0 324 1 333 242 42 100 chr1 276588363 276588553 -5605111 + L1MC4 LINE L1 7864 8042 0 207 0 0 0 chr1 276588601 276588624 -5605040 + (CA)n Simple_repeat Simple_repeat 1 23 0 1749 181 0 10 chr1 276588704 276589018 -5604646 + AluJb SINE Alu 1 311 -1 735 179 0 0 chr1 276589551 276589674 -5603990 + AluJ SINE Alu 11 133 -179 2363 95 3 0 chr1 276589678 276590023 -5603641 + AluSg SINE Alu 1 346 0 928 202 0 16 chr1 276590023 276590211 -5603453 + AluJ SINE Alu 120 304 -8 2447 92 0 0 chr1 276590470 276590775 -5602889 - AluSx SINE Alu -7 305 1 2369 93 0 0 chr1 276591597 276591897 -5601767 - AluSx SINE Alu -12 300 1 1071 260 104 20 chr1 276592478 276592832 -5600832 + L2 LINE L2 1970 2353 -961 453 310 197 22 chr1 276592848 276593280 -5600384 + L2 LINE L2 2539 3062 -251 1712 178 29 0 chr1 276593387 276593701 -5599963 + AluJb SINE Alu 1 322 0 203 250 132 0 chr1 276593858 276593934 -5599730 + L2 LINE L2 3062 3147 -166 1940 118 40 3 chr1 276594045 276594342 -5599322 + AluSc SINE Alu 1 308 -1 654 298 94 16 chr1 276594457 276594712 -5598952 + L3 LINE CR1 612 886 -691 486 331 224 36 chr1 276595032 276595563 -5598101 + L3 LINE CR1 940 1570 -7 329 325 85 25 chr1 276595647 276595847 -5597817 + MIR SINE MIR 51 262 0 240 232 80 71 chr1 276597623 276597735 -5595929 + MIR SINE MIR 30 142 -120 315 0 0 0 chr1 276598431 276598466 -5595198 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 316 306 67 84 chr1 276598908 276599267 -5594397 - L1M2 LINE L1 -5734 1115 763 213 121 0 0 chr1 276599369 276599402 -5594262 + (TCG)n Simple_repeat Simple_repeat 1 33 0 457 306 148 6 chr1 276600929 276601112 -5592552 - MIR SINE MIR -42 220 12 197 233 0 0 chr1 276601329 276601372 -5592292 + MIR SINE MIR 165 207 -55 272 250 135 20 chr1 276601372 276601520 -5592144 + MER112 DNA MER1_type 1 165 -95 441 257 71 21 chr1 276601618 276601758 -5591906 - L2 LINE L2 -31 3282 3136 181 170 85 21 chr1 276601764 276601811 -5591853 + MIR SINE MIR 213 262 0 21 57 0 0 chr1 276602327 276602362 -5591302 + AT_rich Low_complexity Low_complexity 1 35 0 2158 113 3 0 chr1 276602655 276602948 -5590716 - AluSx SINE Alu -18 294 1 215 159 23 0 chr1 276603088 276603132 -5590532 + T-rich Low_complexity Low_complexity 3 47 0 2435 51 0 22 chr1 276603363 276603678 -5589986 + AluY SINE Alu 1 308 -3 2087 97 3 50 chr1 276603782 276604101 -5589563 + AluSq SINE Alu 1 304 -9 394 291 40 40 chr1 276605108 276605259 -5588405 + MIR3 SINE MIR 11 161 -47 288 282 26 0 chr1 276605389 276605467 -5588197 + CT-rich Low_complexity Low_complexity 1 80 0 201 74 0 0 chr1 276606092 276606119 -5587545 + (T)n Simple_repeat Simple_repeat 1 27 0 1840 90 8 0 chr1 276606120 276606354 -5587310 - AluSp SINE Alu -77 236 1 2243 111 3 0 chr1 276606354 276606650 -5587014 - AluSx SINE Alu -14 298 1 696 174 54 20 chr1 276607470 276607619 -5586045 + MER20 DNA MER1_type 63 216 -3 2338 92 3 3 chr1 276608576 276608881 -5584783 + AluSp SINE Alu 1 305 -8 2258 91 7 3 chr1 276609774 276610070 -5583594 + AluSx SINE Alu 1 297 -15 907 172 115 38 chr1 276610282 276610543 -5583121 - L1MA7 LINE L1 0 6291 6011 1854 170 6 10 chr1 276610549 276610860 -5582804 - AluSx SINE Alu 0 312 3 1172 174 94 42 chr1 276610916 276611203 -5582461 + AluSp SINE Alu 1 302 -1 2223 101 3 0 chr1 276611204 276611501 -5582163 + AluY SINE Alu 2 299 -12 2203 86 3 20 chr1 276611557 276611861 -5581803 + AluSp SINE Alu 3 301 -12 554 259 30 107 chr1 276613301 276613498 -5580166 - MLT1H1 LTR MaLR -249 300 76 578 82 24 0 chr1 276613543 276613628 -5580036 - AluSc SINE Alu -9 300 214 314 203 79 134 chr1 276613847 276614049 -5579615 - L1MDb LINE L1 -5857 552 362 257 247 27 14 chr1 276614120 276614193 -5579471 - L3 LINE CR1 -24 1553 1480 220 386 86 50 chr1 276614820 276615157 -5578507 + L2 LINE L2 2924 3272 0 47 19 0 0 chr1 276615565 276615619 -5578045 + AT_rich Low_complexity Low_complexity 1 54 0 28 29 0 0 chr1 276615759 276615794 -5577870 + AT_rich Low_complexity Low_complexity 1 35 0 2046 138 0 3 chr1 276615794 276616084 -5577580 - AluSx SINE Alu -23 289 1 2212 160 70 5 chr1 276618220 276618620 -5575044 - MSTB LTR MaLR 0 426 1 222 62 0 0 chr1 276618741 276618773 -5574891 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 312 158 0 0 chr1 276619505 276619562 -5574102 + CT-rich Low_complexity Low_complexity 4 60 0 2234 98 7 0 chr1 276620097 276620402 -5573262 - AluSc SINE Alu -2 307 1 5246 184 18 17 chr1 276620709 276622033 -5571631 - L1MC2 LINE L1 -11 6751 5423 2661 199 52 58 chr1 276622045 276622469 -5571195 - L1MC2 LINE L1 -1292 5272 4847 2205 117 0 0 chr1 276622469 276622759 -5570905 - AluSg SINE Alu -20 290 1 2661 199 52 58 chr1 276622759 276623034 -5570630 - L1MC2 LINE L1 -1717 4847 4577 1530 198 40 0 chr1 276623034 276623191 -5570473 - AluJb SINE Alu -23 289 115 180 0 0 0 chr1 276623191 276623211 -5570453 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1530 198 40 0 chr1 276623211 276623331 -5570333 - AluJb SINE Alu -197 115 1 2661 199 52 58 chr1 276623331 276623535 -5570129 - L1MC2 LINE L1 -1987 4577 4373 380 167 0 0 chr1 276623536 276623596 -5570068 - Tigger5 DNA MER2_type 0 2323 2264 1260 200 0 29 chr1 276623602 276623842 -5569822 - Tigger5 DNA MER2_type -2090 233 1 4681 219 55 56 chr1 276623844 276625540 -5568124 - L1MC2 LINE L1 -2193 4371 2675 891 142 0 15 chr1 276625540 276625674 -5567990 - FLAM_A SINE Alu 0 133 2 4681 219 55 56 chr1 276625674 276625891 -5567773 - L1MC2 LINE L1 -3889 2675 2458 1765 152 37 20 chr1 276625891 276626187 -5567477 - AluJo SINE Alu -11 301 1 4681 219 55 56 chr1 276626187 276626224 -5567440 - L1MC2 LINE L1 -4106 2458 2422 1079 149 11 0 chr1 276626224 276626398 -5567266 - AluSg/x SINE Alu -12 300 125 3385 193 72 70 chr1 276626431 276627075 -5566589 - L1MC2 LINE L1 -4164 2400 1758 2297 99 0 10 chr1 276627075 276627388 -5566276 - AluSx SINE Alu -2 310 1 3385 193 72 70 chr1 276627388 276627638 -5566026 - L1MC2 LINE L1 -4806 1758 1510 261 98 0 0 chr1 276627638 276627679 -5565985 + (TA)n Simple_repeat Simple_repeat 1 41 0 3385 193 72 70 chr1 276627679 276627978 -5565686 - L1MC2 LINE L1 -5054 1510 1213 2278 98 0 10 chr1 276627978 276628284 -5565380 - AluSx SINE Alu -9 303 1 3385 193 72 70 chr1 276628284 276629128 -5564536 - L1MC2 LINE L1 -5351 1213 269 2297 93 7 0 chr1 276629128 276629419 -5564245 - AluSg SINE Alu -17 293 1 3385 193 72 70 chr1 276629419 276629685 -5563979 - L1MC2 LINE L1 -6295 269 5 21 36 0 0 chr1 276630644 276630672 -5562992 + AT_rich Low_complexity Low_complexity 1 28 0 372 274 30 44 chr1 276631197 276631332 -5562332 - MER5A DNA MER1_type -40 138 6 1569 189 26 29 chr1 276632423 276632730 -5560934 + AluJb SINE Alu 1 306 -6 2380 84 3 0 chr1 276632967 276633263 -5560401 + AluY SINE Alu 1 297 -14 3012 90 40 25 chr1 276633285 276633731 -5559933 - MLT2A2 LTR ERVL 0 453 1 701 241 38 76 chr1 276633734 276633970 -5559694 - MIR SINE MIR 0 262 36 622 366 44 64 chr1 276634800 276635256 -5558408 + L2 LINE L2 2812 3258 -14 217 205 229 48 chr1 276635370 276635453 -5558211 + L2 LINE L2 3175 3272 0 365 326 23 0 chr1 276635620 276635749 -5557915 + Charlie8 DNA MER1_type 133 264 -2153 2020 257 32 29 chr1 276635907 276636650 -5557014 - MER21B LTR ERV1 -54 809 19 401 163 11 98 chr1 276636657 276636749 -5556915 - MER21B LTR ERV1 -767 96 13 668 230 74 83 chr1 276636749 276636979 -5556685 + MIR SINE MIR 35 262 0 1566 247 80 45 chr1 276637458 276637517 -5556147 - L1M3d LINE L1 -4634 1931 1876 2696 166 45 11 chr1 276637517 276638072 -5555592 - L1MB4 LINE L1 0 6180 5607 1566 247 80 45 chr1 276638072 276638723 -5554941 - L1M3d LINE L1 -4689 1876 1249 342 45 0 0 chr1 276638723 276638767 -5554897 + (GA)n Simple_repeat Simple_repeat 1 44 0 1566 247 80 45 chr1 276638767 276638976 -5554688 - L1M3d LINE L1 -5316 1249 611 2329 104 0 0 chr1 276639468 276639776 -5553888 - AluSg SINE Alu -2 308 1 703 269 93 89 chr1 276640117 276640225 -5553439 + L2 LINE L2 1536 1642 -1672 2003 167 0 0 chr1 276640225 276640536 -5553128 - AluSx SINE Alu -1 311 1 703 269 93 89 chr1 276640536 276640776 -5552888 + L2 LINE L2 1642 1889 -1425 2360 30 44 10 chr1 276640776 276641072 -5552592 - AluY SINE Alu -5 306 1 703 269 93 89 chr1 276641072 276641194 -5552470 + L2 LINE L2 1889 2009 -1305 1360 244 113 49 chr1 276641531 276642395 -5551269 - L1ME3A LINE L1 -254 5985 5178 2234 116 0 7 chr1 276642395 276642697 -5550967 - AluSx SINE Alu -12 300 1 1771 95 157 0 chr1 276642701 276642963 -5550701 - AluSq SINE Alu 0 303 1 1360 244 113 49 chr1 276642963 276643599 -5550065 - L1ME3A LINE L1 -1063 5176 4376 731 176 27 143 chr1 276643609 276643778 -5549886 - L1ME3A LINE L1 -3964 2432 2245 2174 110 0 0 chr1 276643778 276644060 -5549604 - AluSq SINE Alu -31 282 1 731 176 27 143 chr1 276644060 276644214 -5549450 - L1ME3A LINE L1 -4151 2245 2155 2254 112 0 0 chr1 276644214 276644509 -5549155 - AluSg SINE Alu -15 295 1 731 176 27 143 chr1 276644509 276644554 -5549110 - L1ME3A LINE L1 -4241 2155 2106 198 304 35 35 chr1 276644913 276645028 -5548636 + L2 LINE L2 2815 2929 -385 17031 127 12 19 chr1 276645166 276646312 -5547352 + Tigger2 DNA MER2_type 1 1154 -1564 2128 121 0 0 chr1 276646312 276646617 -5547047 + AluSx SINE Alu 1 305 0 17031 127 12 19 chr1 276646617 276648137 -5545527 + Tigger2 DNA MER2_type 1154 2650 -68 2237 116 0 0 chr1 276648137 276648431 -5545233 + AluSx SINE Alu 1 294 -18 17031 127 12 19 chr1 276648431 276648500 -5545164 + Tigger2 DNA MER2_type 2650 2718 0 195 175 0 0 chr1 276648571 276648611 -5545053 + L2 LINE L2 3274 3313 0 21 57 0 0 chr1 276648981 276649016 -5544648 + AT_rich Low_complexity Low_complexity 1 35 0 2523 79 0 0 chr1 276649371 276649675 -5543989 + AluSc SINE Alu 1 304 -5 25 75 0 0 chr1 276650020 276650073 -5543591 + AT_rich Low_complexity Low_complexity 1 53 0 2230 130 10 0 chr1 276650153 276650454 -5543210 + AluSx SINE Alu 1 304 -8 194 88 0 29 chr1 276650622 276650656 -5543008 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 183 42 0 0 chr1 276651398 276651422 -5542242 + (T)n Simple_repeat Simple_repeat 1 24 0 279 224 153 12 chr1 276652760 276652845 -5540819 + MIR3 SINE MIR 111 207 -1 912 279 29 4 chr1 276653519 276653759 -5539905 + MIR SINE MIR 7 252 -10 1513 181 61 25 chr1 276653864 276654141 -5539523 - AluJo SINE Alu -25 287 1 2376 95 0 0 chr1 276654204 276654508 -5539156 - AluSc SINE Alu -5 304 1 375 258 93 40 chr1 276654646 276654797 -5538867 - MIR SINE MIR -10 252 94 460 320 139 6 chr1 276654833 276655149 -5538515 + L1MC4a LINE L1 4977 5334 -812 385 351 84 9 chr1 276655246 276655687 -5537977 + L1MC4a LINE L1 5451 5924 -1884 24 0 0 0 chr1 276655878 276655902 -5537762 + AT_rich Low_complexity Low_complexity 1 24 0 974 132 0 0 chr1 276655978 276656114 -5537550 + AluJb SINE Alu 1 136 -176 2273 113 3 0 chr1 276656770 276657071 -5536593 + AluSx SINE Alu 1 302 -10 212 264 97 14 chr1 276658892 276658964 -5534700 - L2 LINE L2 -18 3295 3218 2278 113 0 0 chr1 276659065 276659356 -5534308 - AluSx SINE Alu -21 291 1 2343 103 0 0 chr1 276661666 276661967 -5531697 - AluSx SINE Alu -11 301 1 454 221 88 9 chr1 276662144 276662257 -5531407 - MER3 DNA MER1_type -85 124 3 3206 110 2 60 chr1 276662306 276662868 -5530796 + L1PA14 LINE L1 5633 6161 0 1778 153 122 18 chr1 276663235 276663621 -5530043 - MSTB LTR MaLR 0 426 1 2251 122 3 0 chr1 276663706 276664018 -5529646 - AluSq SINE Alu 0 313 1 237 378 131 10 chr1 276664377 276664866 -5528798 + L2 LINE L2 2338 2885 -429 669 231 50 39 chr1 276664882 276665064 -5528600 + MIR SINE MIR 2 185 -77 1094 175 47 14 chr1 276665332 276665543 -5528121 - MER20 DNA MER1_type 0 219 2 2767 143 85 19 chr1 276665618 276666004 -5527660 - L1PA16 LINE L1 -9 6157 5723 2138 128 3 0 chr1 276666004 276666294 -5527370 - AluSx SINE Alu -21 291 1 2767 143 85 19 chr1 276666294 276666446 -5527218 - L1PA16 LINE L1 -443 5723 5583 617 201 21 14 chr1 276666462 276666606 -5527058 - LTR45 LTR ERV1 0 525 381 350 85 0 17 chr1 276666706 276666765 -5526899 + L1MA1 LINE L1 6245 6302 0 393 161 37 12 chr1 276666784 276666865 -5526799 - LTR45 LTR ERV1 -391 134 52 235 354 10 40 chr1 276666919 276667018 -5526646 + L2 LINE L2 3217 3312 -1 2448 78 0 0 chr1 276667200 276667493 -5526171 + AluSc SINE Alu 1 293 -16 349 342 88 64 chr1 276667833 276668804 -5524860 + L2 LINE L2 1616 2609 -705 652 223 108 0 chr1 276668810 276668967 -5524697 - FAM SINE Alu 0 175 2 29 60 0 0 chr1 276669542 276669592 -5524072 + AT_rich Low_complexity Low_complexity 1 50 0 571 281 100 9 chr1 276669977 276670187 -5523477 + MIR SINE MIR 24 252 -10 290 110 0 0 chr1 276670576 276670635 -5523029 - L1MA4A LINE L1 -3 6302 6244 194 50 0 0 chr1 276671601 276671900 -5521764 + AT_rich Low_complexity Low_complexity 1 299 0 2379 64 0 0 chr1 276672230 276672545 -5521119 - AluY SINE Alu 0 315 1 2140 108 6 16 chr1 276672605 276672920 -5520744 - AluSx SINE Alu 0 312 1 21 36 0 0 chr1 276673490 276673518 -5520146 + AT_rich Low_complexity Low_complexity 1 28 0 228 229 0 0 chr1 276674021 276674082 -5519582 + L1PB4 LINE L1 6092 6152 -4 293 326 61 0 chr1 276675783 276675881 -5517783 - L2 LINE L2 0 3272 3169 735 348 47 42 chr1 276676156 276676785 -5516879 - L2 LINE L2 -56 3216 2596 182 304 0 18 chr1 276677232 276677288 -5516376 - L2 LINE L2 -676 2638 2584 215 360 129 26 chr1 276677290 276677671 -5515993 + L2 LINE L2 1299 1718 -1596 641 231 94 6 chr1 276677678 276677838 -5515826 + MER5B DNA MER1_type 3 176 -2 327 365 43 19 chr1 276677848 276678059 -5515605 + L2 LINE L2 1739 1954 -1360 225 317 117 21 chr1 276678094 276678239 -5515425 - L2 LINE L2 -934 2380 2222 545 315 117 44 chr1 276678334 276678899 -5514765 + L2 LINE L2 2371 2976 -338 1612 181 14 0 chr1 276678925 276679231 -5514433 - AluJb SINE Alu 0 310 1 251 279 15 0 chr1 276679376 276679444 -5514220 + L2 LINE L2 3245 3313 0 180 0 0 0 chr1 276679967 276679987 -5513677 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5264 150 22 14 chr1 276679992 276680718 -5512946 - L1PA16 LINE L1 -21 6145 5409 1896 138 159 5 chr1 276680718 276681089 -5512575 - MSTA LTR MaLR 0 428 1 5264 150 22 14 chr1 276681089 276681693 -5511971 - L1PA16 LINE L1 -757 5409 4811 385 335 140 0 chr1 276681860 276682060 -5511604 + MIR SINE MIR 29 256 -6 280 218 35 58 chr1 276682152 276682239 -5511425 + MIR SINE MIR 57 141 -121 1474 163 62 40 chr1 276682282 276682558 -5511106 - AluJo SINE Alu -30 282 1 253 246 0 0 chr1 276682722 276682779 -5510885 + T-rich Low_complexity Low_complexity 1 57 0 233 303 7 86 chr1 276684742 276684894 -5508770 - L2 LINE L2 -190 3082 2943 258 346 98 8 chr1 276685669 276685802 -5507862 - L2 LINE L2 -6 3266 3122 200 343 15 0 chr1 276686646 276686713 -5506951 + L3 LINE CR1 1496 1563 -14 30 59 0 0 chr1 276687060 276687111 -5506553 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr1 276687264 276687285 -5506379 + AT_rich Low_complexity Low_complexity 1 21 0 892 229 0 0 chr1 276687299 276687469 -5506195 - FAM SINE Alu -5 170 1 185 414 0 0 chr1 276688300 276688399 -5505265 + MIR3 SINE MIR 87 185 -23 210 269 15 46 chr1 276691400 276691530 -5502134 + CT-rich Low_complexity Low_complexity 4 129 0 307 264 95 43 chr1 276691530 276691761 -5501903 - L1MC5 LINE L1 -158 7803 7561 695 140 0 18 chr1 276692213 276692327 -5501337 - MER45 DNA AcHobo -23 1558 1447 2432 43 3 46 chr1 276692367 276692692 -5500972 - AluY SINE Alu 0 311 1 662 266 102 62 chr1 276692889 276693034 -5500630 - MER45C DNA AcHobo -661 292 154 2183 71 3 44 chr1 276693034 276693328 -5500336 + AluSp SINE Alu 1 282 -31 193 29 59 0 chr1 276693334 276693368 -5500296 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 662 266 102 62 chr1 276693368 276693490 -5500174 - MER45C DNA AcHobo -803 150 7 1172 224 14 0 chr1 276693611 276693830 -5499834 + MER58A DNA MER1_type 2 223 -1 2108 109 3 32 chr1 276694547 276694860 -5498804 - AluSx SINE Alu -8 304 1 364 355 104 11 chr1 276694874 276695153 -5498511 + L3b LINE CR1 1153 1457 -126 257 336 59 8 chr1 276695638 276695757 -5497907 - L2 LINE L2 -11 3261 3137 2390 106 0 0 chr1 276697551 276697863 -5495801 + AluSx SINE Alu 1 312 0 286 338 138 7 chr1 276698400 276698545 -5495119 + MIR3 SINE MIR 30 193 -15 264 130 0 0 chr1 276699657 276699703 -5493961 + (TC)n Simple_repeat Simple_repeat 1 46 0 1663 163 0 14 chr1 276699974 276700250 -5493414 - AluJo SINE Alu -38 274 3 1406 202 7 47 chr1 276701046 276701343 -5492321 + AluJb SINE Alu 2 286 -26 22 0 0 0 chr1 276701344 276701366 -5492298 + AT_rich Low_complexity Low_complexity 1 22 0 2196 128 0 0 chr1 276701440 276701746 -5491918 + AluY SINE Alu 1 306 -5 194 338 59 0 chr1 276701845 276701913 -5491751 - MIR3 SINE MIR -23 185 114 3908 183 27 41 chr1 276702113 276703390 -5490274 + L1MB8 LINE L1 4815 6087 -91 278 306 14 0 chr1 276703607 276703679 -5489985 + MER91B DNA MER1_type 1 73 -117 497 187 18 3 chr1 276703691 276703800 -5489864 + L1MB7 LINE L1 6077 6184 0 233 220 0 17 chr1 276704278 276704337 -5489327 - L1ME LINE L1 -672 5492 5435 2070 119 0 14 chr1 276704338 276704624 -5489040 - AluSx SINE Alu -30 282 1 1093 186 0 32 chr1 276705115 276705335 -5488329 - AluY SINE Alu -98 213 1 438 234 80 57 chr1 276705336 276705425 -5488239 + L2 LINE L2 2617 2702 -612 2099 115 0 0 chr1 276705425 276705746 -5487918 + AluSg SINE Alu 1 321 0 438 234 80 57 chr1 276705746 276705830 -5487834 + L2 LINE L2 2702 2795 -519 242 355 14 21 chr1 276705868 276706009 -5487655 - L3 LINE CR1 -741 836 697 315 296 117 25 chr1 276706042 276706238 -5487426 + L2 LINE L2 2923 3136 -177 180 0 0 0 chr1 276706332 276706352 -5487312 + (CATTG)n Simple_repeat Simple_repeat 5 24 0 320 310 133 43 chr1 276706372 276706840 -5486824 + L2 LINE L2 2746 3268 -45 528 358 28 0 chr1 276707298 276707513 -5486151 + MIR SINE MIR 42 262 0 436 354 139 32 chr1 276707539 276708036 -5485628 - L3 LINE CR1 -420 1157 608 21 0 0 0 chr1 276708172 276708193 -5485471 + AT_rich Low_complexity Low_complexity 1 21 0 253 327 135 13 chr1 276709975 276710131 -5483533 + MIR3 SINE MIR 14 188 -20 24 0 0 0 chr1 276711091 276711115 -5482549 + AT_rich Low_complexity Low_complexity 1 24 0 198 224 0 0 chr1 276711697 276711746 -5481918 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 226 216 14 95 chr1 276711774 276711848 -5481816 + L2 LINE L2 3242 3309 -4 25 0 0 0 chr1 276711908 276711933 -5481731 + AT_rich Low_complexity Low_complexity 1 25 0 199 202 44 0 chr1 276712592 276712706 -5480958 + (TA)n Simple_repeat Simple_repeat 1 119 0 1807 152 32 26 chr1 276712815 276713124 -5480540 + AluJb SINE Alu 1 311 -1 310 394 11 6 chr1 276713351 276713531 -5480133 + L3 LINE CR1 382 562 -1015 830 265 64 16 chr1 276716166 276716415 -5477249 + MIR SINE MIR 1 261 -1 725 212 62 17 chr1 276716667 276716846 -5476818 + MER3 DNA MER1_type 1 187 -22 24 32 0 0 chr1 276717475 276717506 -5476158 + AT_rich Low_complexity Low_complexity 1 31 0 1078 184 0 17 chr1 276717599 276717778 -5475886 + AluJo SINE Alu 4 179 -133 301 263 0 25 chr1 276717781 276717861 -5475803 - L1MC4 LINE L1 -1351 6691 6614 760 226 17 11 chr1 276717877 276718054 -5475610 - MER112 DNA MER1_type -82 178 1 259 215 0 131 chr1 276718287 276718394 -5475270 - MLT1H LTR MaLR -36 513 421 463 294 77 41 chr1 276718747 276719111 -5474553 + HAL1 LINE L1 814 1190 -1317 1393 290 24 16 chr1 276719165 276719669 -5473995 + HAL1 LINE L1 1287 1794 -713 542 252 125 27 chr1 276719810 276720265 -5473399 + HAL1 LINE L1 1984 2497 -10 510 256 128 27 chr1 276721105 276721324 -5472340 - MIR SINE MIR -14 248 8 26 93 0 0 chr1 276722171 276722246 -5471418 + AT_rich Low_complexity Low_complexity 1 75 0 31 44 0 0 chr1 276722803 276722848 -5470816 + AT_rich Low_complexity Low_complexity 1 45 0 216 135 0 0 chr1 276724429 276724466 -5469198 + (CA)n Simple_repeat Simple_repeat 2 38 0 201 89 67 22 chr1 276724955 276725000 -5468664 + GA-rich Low_complexity Low_complexity 2 48 0 1622 187 14 10 chr1 276726192 276726486 -5467178 + AluJo SINE Alu 1 295 -17 449 336 22 0 chr1 276726538 276726675 -5466989 - L2 LINE L2 0 3272 3133 191 318 15 76 chr1 276726838 276726970 -5466694 - L2 LINE L2 -235 3037 2914 294 333 81 43 chr1 276726997 276727211 -5466453 - L2 LINE L2 -463 2851 2624 1010 229 200 0 chr1 276727211 276727491 -5466173 + MER58B DNA MER1_type 5 340 -1 294 333 81 43 chr1 276727491 276727534 -5466130 - L2 LINE L2 -690 2624 2584 525 254 45 57 chr1 276728149 276728326 -5465338 + MIR3 SINE MIR 28 202 -6 228 35 0 0 chr1 276729475 276729504 -5464160 + (CA)n Simple_repeat Simple_repeat 1 29 0 738 215 0 0 chr1 276729546 276729676 -5463988 + FLAM_A SINE Alu 1 130 -3 246 292 54 39 chr1 276729843 276729973 -5463691 - L2 LINE L2 0 3272 3141 2099 126 0 10 chr1 276729994 276730304 -5463360 + AluJb SINE Alu 4 310 -2 2200 98 3 0 chr1 276730572 276730859 -5462805 + AluSp SINE Alu 1 288 -25 721 315 64 0 chr1 276730961 276731196 -5462468 - MIR SINE MIR -8 254 5 551 107 0 0 chr1 276731305 276731380 -5462284 + AluS SINE Alu 2 76 -236 2049 96 0 7 chr1 276731380 276731651 -5462013 + AluSc SINE Alu 25 293 -16 234 91 0 0 chr1 276731653 276731686 -5461978 + (GA)n Simple_repeat Simple_repeat 1 33 0 2063 130 0 10 chr1 276732601 276732900 -5460764 - AluSx SINE Alu -16 296 1 239 343 64 29 chr1 276733254 276733426 -5460238 - MLT1K LTR MaLR -410 178 1 1115 153 0 66 chr1 276733463 276733659 -5460005 + AluJo SINE Alu 1 183 -129 837 137 93 81 chr1 276733906 276734067 -5459597 + FRAM SINE Alu 7 169 -7 565 232 202 8 chr1 276734319 276734586 -5459078 + MER5C DNA MER1_type 2 320 -4 682 210 0 0 chr1 276735860 276735979 -5457685 - FLAM_A SINE Alu -12 121 3 718 175 78 42 chr1 276740591 276740808 -5452856 + L1M4 LINE L1 3814 4038 -2108 3882 238 46 22 chr1 276740815 276741922 -5451742 - L1MC4a LINE L1 -5 7803 6670 2118 234 91 5 chr1 276741921 276742506 -5451158 + L1M4 LINE L1 4026 4660 -1486 * 24 53 0 0 chr1 276742970 276743008 -5450656 + AT_rich Low_complexity Low_complexity 1 38 0 685 200 20 120 chr1 276743415 276743497 -5450167 - MIR SINE MIR -3 259 170 888 227 0 0 chr1 276743497 276743651 -5450013 - FRAM SINE Alu -12 154 1 685 200 20 120 chr1 276743651 276743674 -5449990 - MIR SINE MIR -92 170 146 2305 101 3 0 chr1 276743674 276743970 -5449694 + AluSx SINE Alu 1 297 -15 685 200 20 120 chr1 276743970 276744113 -5449551 - MIR SINE MIR -116 146 35 829 299 25 8 chr1 276745540 276745781 -5447883 - MIR SINE MIR -5 257 13 184 278 87 79 chr1 276745827 276745953 -5447711 + MIR SINE MIR 63 189 -73 325 333 150 24 chr1 276748882 276749089 -5444575 + L2 LINE L2 3020 3252 -20 237 33 0 0 chr1 276749313 276749343 -5444321 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 370 195 69 23 chr1 276749573 276749660 -5444004 - L2 LINE L2 0 3272 3182 266 198 140 38 chr1 276749933 276750090 -5443574 + MLT1J2 LTR MaLR 62 234 -216 1370 179 12 8 chr1 276752331 276752582 -5441082 + AluJo SINE Alu 43 294 -18 279 295 66 33 chr1 276752859 276752981 -5440683 + MIR SINE MIR 18 143 -65 378 0 0 0 chr1 276753156 276753198 -5440466 + (CA)n Simple_repeat Simple_repeat 1 42 0 523 311 0 7 chr1 276753218 276753366 -5440298 - MIR SINE MIR -102 160 14 568 245 38 27 chr1 276753556 276753740 -5439924 + MIR SINE MIR 9 194 -68 26 0 0 0 chr1 276757500 276757526 -5436138 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1 276757814 276757835 -5435829 + AT_rich Low_complexity Low_complexity 1 21 0 194 79 0 26 chr1 276757998 276758036 -5435628 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1824 131 3 41 chr1 276758037 276758328 -5435336 - AluSx SINE Alu -32 280 1 211 275 0 0 chr1 276758855 276758895 -5434769 - MIR3 SINE MIR -23 185 146 194 194 0 0 chr1 276758944 276758980 -5434684 - MIR SINE MIR -62 146 111 32 67 0 0 chr1 276760157 276760217 -5433447 + AT_rich Low_complexity Low_complexity 1 60 0 226 250 58 0 chr1 276763027 276763079 -5430585 - L2 LINE L2 -8 3264 3210 282 351 97 8 chr1 276763257 276763391 -5430273 - MIR3 SINE MIR -46 162 17 227 54 27 0 chr1 276763604 276763641 -5430023 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2038 114 4 14 chr1 276763644 276763924 -5429740 - AluSx SINE Alu -35 277 1 717 259 19 37 chr1 276763973 276764189 -5429475 - MIR SINE MIR -49 213 2 567 208 21 14 chr1 276764235 276764379 -5429285 + MER103 DNA DNA 20 164 -2 1400 166 32 48 chr1 276766163 276766260 -5427404 - MER33 DNA MER1_type -2261 324 227 1763 128 97 14 chr1 276766260 276766549 -5427115 + AluSp SINE Alu 1 313 0 1400 166 32 48 chr1 276766549 276766764 -5426900 - MER33 DNA MER1_type -2358 227 17 287 268 41 52 chr1 276767276 276767373 -5426291 - MIR SINE MIR -64 144 49 392 253 136 19 chr1 276767546 276767700 -5425964 - MIR SINE MIR -2 260 89 2645 123 18 0 chr1 276767721 276768102 -5425562 + MER1A DNA MER1_type 142 529 0 191 284 37 62 chr1 276768106 276768187 -5425477 - MIR SINE MIR -171 91 13 2326 110 3 0 chr1 276768971 276769280 -5424384 - AluSx SINE Alu -2 310 1 1159 237 92 35 chr1 276772329 276772626 -5421038 + L1MC4 LINE L1 7582 7913 -129 315 0 0 0 chr1 276772626 276772661 -5421003 + (CA)n Simple_repeat Simple_repeat 2 36 0 1159 237 92 35 chr1 276772661 276772797 -5420867 + L1MC4 LINE L1 7913 8040 -2 322 251 84 42 chr1 276773475 276773698 -5419966 + MER5C DNA MER1_type 1 324 0 611 238 100 6 chr1 276773880 276774040 -5419624 + MIR3 SINE MIR 27 201 -7 2195 97 0 7 chr1 276774319 276774609 -5419055 + AluSc SINE Alu 17 304 -5 310 265 8 106 chr1 276774906 276774959 -5418705 - MIR3 SINE MIR -5 203 146 1414 212 116 0 chr1 276774959 276775261 -5418403 - MER58B DNA MER1_type -2 339 3 310 265 8 106 chr1 276775261 276775339 -5418325 - MIR3 SINE MIR -62 146 85 533 206 29 0 chr1 276775490 276775592 -5418072 - MER5A DNA MER1_type 0 189 85 279 256 0 26 chr1 276775595 276775673 -5417991 - MIR SINE MIR -110 152 77 229 327 43 49 chr1 276775767 276775929 -5417735 - L2 LINE L2 -610 2704 2544 668 159 121 30 chr1 276776272 276776404 -5417260 + AluY SINE Alu 153 296 -15 3055 244 65 28 chr1 276776415 276776963 -5416701 - L1MDa LINE L1 -2482 4058 3532 1237 160 65 169 chr1 276776963 276777300 -5416364 - AluJo SINE Alu 0 302 1 3055 244 65 28 chr1 276777300 276778265 -5415399 - L1MDa LINE L1 -3008 3532 2481 360 247 54 0 chr1 276778272 276778365 -5415299 + L2 LINE L2 3216 3313 0 338 333 129 0 chr1 276778361 276778532 -5415132 - MIR3 SINE MIR 0 208 16 * 2075 119 35 0 chr1 276778765 276779051 -5414613 + AluSg SINE Alu 1 296 -14 8459 112 19 4 chr1 276779147 276780427 -5413237 + HSMAR2 DNA Mariner 2 1301 -1 2175 161 23 10 chr1 276780471 276780856 -5412808 + MLT1B LTR MaLR 1 390 0 1580 175 72 14 chr1 276782788 276783080 -5410584 + AluJb SINE Alu 1 309 -3 246 128 0 0 chr1 276786442 276786481 -5407183 + (A)n Simple_repeat Simple_repeat 1 39 0 278 212 61 0 chr1 276787030 276787096 -5406568 - MIR SINE MIR -89 173 104 381 278 62 28 chr1 276787399 276787575 -5406089 - MARNA DNA Mariner -9 577 396 199 277 229 0 chr1 276787919 276788002 -5405662 + MIR SINE MIR 148 249 -13 2381 164 16 14 chr1 276788313 276789018 -5404646 - L1P5 LINE L1 -470 5684 4980 233 250 40 26 chr1 276790188 276790264 -5403400 + L2 LINE L2 2607 2683 -631 1306 241 135 27 chr1 276790590 276791324 -5402340 + L1MEc LINE L1 1710 2522 -3874 719 202 8 0 chr1 276791334 276791463 -5402201 + FLAM_A SINE Alu 4 133 0 1188 131 15 15 chr1 276791605 276791804 -5401860 + L1PB3 LINE L1 5949 6147 -7 112 0 0 0 chr1 276791804 276791916 -5401748 + AT_rich Low_complexity Low_complexity 1 112 0 3110 224 64 14 chr1 276791953 276793018 -5400646 - L1MCa LINE L1 -2905 3521 2372 2575 59 0 0 chr1 276793018 276793325 -5400339 - AluY SINE Alu -4 307 1 3110 224 64 14 chr1 276793325 276793578 -5400086 - L1MCa LINE L1 -4054 2372 2133 538 277 67 8 chr1 276793582 276793849 -5399815 - L1M4 LINE L1 -3464 2682 2400 4231 231 32 47 chr1 276793868 276795356 -5398308 + L1MEc LINE L1 3200 4665 -1550 1668 171 40 11 chr1 276795653 276795928 -5397736 + AluJb SINE Alu 3 285 -27 207 114 0 0 chr1 276795928 276795963 -5397701 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 2113 209 20 4 chr1 276796193 276796747 -5396917 - L1P LINE L1 -2832 3314 2752 5497 129 31 2 chr1 276796747 276798710 -5394954 + L1PA15 LINE L1 4189 6158 -7 207 0 0 0 chr1 276799074 276799097 -5394567 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 351 78 0 0 chr1 276799096 276799147 -5394517 + (TG)n Simple_repeat Simple_repeat 2 52 0 552 120 141 0 chr1 276799191 276799283 -5394381 - FRAM SINE Alu -51 125 21 261 272 37 0 chr1 276799573 276799654 -5394010 + L1MA10 LINE L1 6176 6259 -75 535 282 0 33 chr1 276799671 276799852 -5393812 - AluJo SINE Alu -17 295 121 353 237 62 121 chr1 276799902 276800126 -5393538 - L2 LINE L2 -90 3223 3013 823 276 102 29 chr1 276803687 276804252 -5389412 + L2 LINE L2 2710 3313 0 879 256 18 4 chr1 276805158 276805385 -5388279 + MIR SINE MIR 27 256 -6 38 51 0 0 chr1 276805418 276805477 -5388187 + AT_rich Low_complexity Low_complexity 1 59 0 23 68 0 0 chr1 276806660 276806704 -5386960 + AT_rich Low_complexity Low_complexity 1 44 0 2090 135 3 0 chr1 276808274 276808577 -5385087 + AluSx SINE Alu 1 304 -8 540 211 16 31 chr1 276810779 276810907 -5382757 - L2 LINE L2 -6 3266 3141 325 336 48 16 chr1 276812989 276813114 -5380550 + MIR3 SINE MIR 41 169 -39 359 250 272 7 chr1 276813863 276813999 -5379665 - MIR SINE MIR -71 191 20 501 275 60 80 chr1 276814413 276814664 -5379000 + MIR SINE MIR 14 259 -3 209 234 0 21 chr1 276814893 276814940 -5378724 + MIR SINE MIR 217 262 0 698 222 150 11 chr1 276817511 276817777 -5375887 - L1ME4a LINE L1 -3 6118 5816 260 242 71 10 chr1 276817801 276817900 -5375764 - L1ME4a LINE L1 -365 5756 5652 213 313 144 19 chr1 276818112 276818272 -5375392 + MIR SINE MIR 76 255 -7 608 191 26 0 chr1 276818496 276818611 -5375053 - L1MC1 LINE L1 -6 6327 6210 281 264 36 0 chr1 276818671 276818781 -5374883 - L1ME4a LINE L1 -22 6099 5986 1055 195 18 9 chr1 276820059 276820280 -5373384 - MLT2D LTR ERVL -189 225 3 332 204 0 0 chr1 276820377 276820431 -5373233 + L2 LINE L2 3217 3270 -2 187 400 13 0 chr1 276821214 276821289 -5372375 - MIR SINE MIR -142 120 45 * 381 280 129 44 chr1 276821252 276821477 -5372187 + MIR SINE MIR 19 262 0 440 333 8 0 chr1 276821477 276821609 -5372055 - MIR3 SINE MIR -63 145 13 767 186 88 16 chr1 276822144 276822337 -5371327 - MER58C DNA MER1_type 0 215 9 234 306 62 42 chr1 276822401 276822545 -5371119 - MIR SINE MIR -46 216 70 216 0 0 0 chr1 276822559 276822583 -5371081 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 256 368 53 0 chr1 276822583 276822678 -5370986 - L2 LINE L2 -32 3281 3182 4384 143 18 7 chr1 276822720 276823455 -5370209 + Tigger2 DNA MER2_type 2 744 -1974 1390 137 52 12 chr1 276823518 276823766 -5369898 + Tigger2 DNA MER2_type 2461 2718 0 1232 197 89 26 chr1 276823851 276823981 -5369683 - AluJo SINE Alu -25 287 167 2314 83 20 3 chr1 276823981 276824282 -5369382 - AluSx SINE Alu -6 306 1 1232 197 89 26 chr1 276824282 276824420 -5369244 - AluJo SINE Alu -145 167 2 2403 66 20 0 chr1 276824718 276825023 -5368641 - AluY SINE Alu 0 311 1 182 313 24 0 chr1 276825937 276826020 -5367644 - L2 LINE L2 -1159 2155 2071 637 260 103 5 chr1 276826071 276826275 -5367389 + MIR SINE MIR 31 254 -8 192 212 0 0 chr1 276828647 276828680 -5364984 - MER5A DNA MER1_type -107 82 50 436 260 169 6 chr1 276829122 276829299 -5364365 + MIR SINE MIR 53 258 -4 205 356 82 26 chr1 276829320 276829514 -5364150 + L2 LINE L2 3041 3245 -27 2297 89 0 0 chr1 276829514 276829816 -5363848 + AluSg SINE Alu 1 302 -8 593 232 95 6 chr1 276829891 276830059 -5363605 + MIR SINE MIR 15 197 -65 1799 130 42 0 chr1 276830374 276830658 -5363006 + AluSg SINE Alu 1 296 -14 2321 70 10 16 chr1 276830667 276830981 -5362683 + AluSp SINE Alu 1 312 -1 198 273 91 20 chr1 276834201 276834300 -5359364 - L2 LINE L2 -207 3065 2960 324 319 162 15 chr1 276834367 276834571 -5359093 - MIR SINE MIR -8 254 21 246 293 13 13 chr1 276835157 276835232 -5358432 + MER5A DNA MER1_type 115 189 0 208 217 17 33 chr1 276835302 276835362 -5358302 + MIR SINE MIR 89 147 -115 2208 107 0 7 chr1 276837047 276837355 -5356309 - AluSx SINE Alu -6 306 1 2048 104 23 0 chr1 276837356 276837655 -5356009 - AluSq SINE Alu -7 306 1 305 266 18 40 chr1 276840702 276840816 -5352848 + MIR SINE MIR 4 112 -137 203 143 171 29 chr1 276840931 276841001 -5352663 - MIR3 SINE MIR -28 180 101 37 0 0 0 chr1 276848177 276848214 -5345450 + AT_rich Low_complexity Low_complexity 1 37 0 190 273 15 30 chr1 276849805 276849871 -5343793 - L3b LINE CR1 -217 1366 1302 1922 134 39 9 chr1 276852771 276853106 -5340558 + L1PA13 LINE L1 5815 6159 -4 323 246 14 0 chr1 276853745 276853814 -5339850 - L2 LINE L2 -20 3252 3183 835 94 0 0 chr1 276853822 276853939 -5339725 + AluSg/x SINE Alu 188 304 -6 24 0 0 0 chr1 276854972 276854996 -5338668 + AT_rich Low_complexity Low_complexity 1 24 0 346 219 152 9 chr1 276855588 276855693 -5337971 - L2 LINE L2 -1 3312 3193 436 300 100 50 chr1 276855752 276855992 -5337672 + MIR SINE MIR 1 252 -10 309 263 40 0 chr1 276856013 276856089 -5337575 - L2 LINE L2 -2 3311 3233 209 184 0 0 chr1 276856283 276856321 -5337343 + (TG)n Simple_repeat Simple_repeat 2 39 0 1416 146 49 4 chr1 276856447 276856693 -5336971 - L1MC1 LINE L1 -16 6317 6061 399 136 15 0 chr1 276856759 276856825 -5336839 - LTR30 LTR ERV1 -104 618 552 913 256 39 11 chr1 276856826 276857111 -5336553 - L1M4 LINE L1 -1012 5134 4842 2051 84 7 3 chr1 276857479 276857766 -5335898 + AluSx SINE Alu 16 303 -9 183 297 18 99 chr1 276857860 276857971 -5335693 + L2 LINE L2 3189 3290 -23 278 371 80 21 chr1 276859575 276859863 -5333801 - L2 LINE L2 -13 3259 2955 180 333 72 0 chr1 276859870 276859939 -5333725 + L2 LINE L2 3150 3223 -49 219 133 0 0 chr1 276860183 276860213 -5333451 + (CA)n Simple_repeat Simple_repeat 1 30 0 189 366 10 10 chr1 276860693 276860794 -5332870 + L2 LINE L2 2876 2976 -337 246 318 0 11 chr1 276860983 276861071 -5332593 + L2 LINE L2 3183 3269 -3 331 252 47 24 chr1 276861349 276861476 -5332188 + MER94 DNA DNA 3 132 -2 1907 161 0 0 chr1 276861553 276861864 -5331800 + AluSx SINE Alu 1 311 -1 299 260 23 164 chr1 276862129 276862306 -5331358 - MIR3 SINE MIR -3 205 54 1133 88 28 124 chr1 276862346 276862563 -5331101 + MER30 DNA MER1_type 1 196 -34 1201 112 36 31 chr1 276862580 276862776 -5330888 - MER30 DNA MER1_type -28 202 6 259 288 45 45 chr1 276862865 276862976 -5330688 - L2 LINE L2 -8 3264 3154 1292 246 54 27 chr1 276863181 276863628 -5330036 + L1ME1 LINE L1 5703 6161 -5 1787 136 4 14 chr1 276863651 276863960 -5329704 + AluJb SINE Alu 10 315 0 823 269 25 0 chr1 276864766 276864963 -5328701 + MER63A DNA MER1_type 1 202 -8 3024 204 151 25 chr1 276864974 276865027 -5328637 - L1MC4 LINE L1 -684 7358 7313 333 94 250 0 chr1 276865027 276865091 -5328573 + MADE1 DNA Mariner 1 80 0 3024 204 151 25 chr1 276865091 276865922 -5327742 - L1MC4 LINE L1 -729 7313 6362 183 80 0 0 chr1 276865922 276865947 -5327717 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 734 284 35 5 chr1 276866213 276866414 -5327250 - MIR SINE MIR -48 214 8 406 255 38 19 chr1 276866741 276866847 -5326817 + L2 LINE L2 3191 3298 -15 210 71 0 0 chr1 276866848 276866876 -5326788 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 23 78 0 0 chr1 276866984 276867035 -5326629 + AT_rich Low_complexity Low_complexity 1 51 0 438 311 47 68 chr1 276867616 276867840 -5325824 - MIR SINE MIR -43 219 3 322 309 140 60 chr1 276867878 276868228 -5325436 - L2 LINE L2 -3 3310 2933 620 289 98 26 chr1 276868307 276868573 -5325091 - L2 LINE L2 -430 2884 2600 215 0 67 0 chr1 276869102 276869132 -5324532 + (CTATT)n Simple_repeat Simple_repeat 4 35 0 34 0 0 0 chr1 276869237 276869271 -5324393 + AT_rich Low_complexity Low_complexity 1 34 0 219 282 26 26 chr1 276869539 276869617 -5324047 + L2 LINE L2 3231 3308 -5 21 36 0 0 chr1 276869704 276869732 -5323932 + AT_rich Low_complexity Low_complexity 1 28 0 1896 144 3 10 chr1 276869894 276870207 -5323457 + AluSx SINE Alu 1 311 -1 1292 204 4 22 chr1 276870265 276870534 -5323130 + AluJo SINE Alu 1 264 -48 26 30 0 0 chr1 276871168 276871201 -5322463 + AT_rich Low_complexity Low_complexity 1 33 0 2463 48 0 7 chr1 276871964 276872273 -5321391 - AluY SINE Alu -4 307 1 1485 232 34 39 chr1 276872568 276872951 -5320713 - L1MCc LINE L1 -5985 438 58 261 0 0 0 chr1 276872951 276872980 -5320684 + (TG)n Simple_repeat Simple_repeat 2 30 0 185 233 70 70 chr1 276873070 276873156 -5320508 - L2 LINE L2 -525 2789 2704 1027 178 0 0 chr1 276873588 276873751 -5319913 - FRAM SINE Alu -2 164 2 1908 115 0 7 chr1 276873776 276874055 -5319609 + AluSq SINE Alu 1 277 -36 452 181 0 0 chr1 276924059 276924131 -5269533 - AluJ/FLAM SINE Alu -240 72 1 509 316 109 8 chr1 276924332 276924567 -5269097 - MIR SINE MIR -12 250 1 563 174 37 0 chr1 276924689 276924798 -5268866 - MER81 DNA DNA 0 114 2 28 48 0 0 chr1 276925239 276925281 -5268383 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 276925582 276925604 -5268060 + AT_rich Low_complexity Low_complexity 1 22 0 1464 196 32 7 chr1 276925608 276925889 -5267775 + AluJo SINE Alu 5 292 -20 1480 141 27 97 chr1 276926961 276927260 -5266404 - AluJb SINE Alu -34 278 1 2070 106 3 0 chr1 276930669 276930951 -5262713 + AluSc SINE Alu 1 283 -26 811 236 77 14 chr1 276931815 276932023 -5261641 + MER58A DNA MER1_type 1 221 -3 203 231 26 0 chr1 276933484 276933523 -5260141 - L2 LINE L2 -10 3262 3223 21 36 0 0 chr1 276934050 276934078 -5259586 + AT_rich Low_complexity Low_complexity 1 28 0 327 235 41 20 chr1 276934113 276934211 -5259453 - HsTC2 DNA Tc2 0 1898 1799 515 292 69 23 chr1 276934748 276934964 -5258700 + L2 LINE L2 1860 2085 -1229 180 310 35 0 chr1 276934983 276935041 -5258623 - L2 LINE L2 -8 3264 3205 487 252 0 0 chr1 276935092 276935211 -5258453 + L1MA10 LINE L1 6216 6334 0 336 191 60 36 chr1 276935458 276935542 -5258122 + L2 LINE L2 3228 3313 0 5162 144 13 3 chr1 276935752 276936619 -5257045 + L1P LINE L1 3826 4700 -1446 21 0 0 0 chr1 276937647 276937668 -5255996 + AT_rich Low_complexity Low_complexity 1 21 0 589 303 64 9 chr1 276937772 276937990 -5255674 - L2 LINE L2 0 3313 3084 1523 199 74 195 chr1 276938003 276938488 -5255176 - MLT1G LTR MaLR 0 590 214 2480 169 30 8 chr1 276938488 276938956 -5254708 - L1MB7 LINE L1 -19 6165 5688 1523 199 74 195 chr1 276938956 276939147 -5254517 - MLT1G LTR MaLR -376 214 1 397 308 71 40 chr1 276939325 276939549 -5254115 - MIR SINE MIR -13 249 19 381 336 74 13 chr1 276940616 276940765 -5252899 - L2 LINE L2 0 3272 3115 2307 97 3 0 chr1 276948656 276948964 -5244700 - AluSx SINE Alu -3 309 1 185 0 40 0 chr1 276949382 276949407 -5244257 + (TA)n Simple_repeat Simple_repeat 2 27 0 333 309 10 55 chr1 276949645 276949853 -5243811 - MIR SINE MIR -46 216 18 2140 84 3 53 chr1 276949985 276950308 -5243356 - AluSc SINE Alu -2 307 1 482 365 142 26 chr1 276950985 276951247 -5242417 - L2 LINE L2 -421 2893 2663 1540 170 18 4 chr1 276951247 276951524 -5242140 + AluJo SINE Alu 1 281 -31 482 365 142 26 chr1 276951524 276952000 -5241664 - L2 LINE L2 -651 2663 2069 380 230 54 0 chr1 276953287 276953360 -5240304 + Tigger5 DNA MER2_type 2 78 -2245 322 182 0 0 chr1 276953360 276953415 -5240249 - Tigger5 DNA MER2_type -3 2320 2266 234 156 22 22 chr1 276953417 276953462 -5240202 + Tigger5 DNA MER2_type 2279 2323 0 2946 212 132 3 chr1 276953500 276954265 -5239399 - MER63C DNA MER1_type 0 930 67 268 237 0 0 chr1 276954457 276954516 -5239148 - MER63C DNA MER1_type -865 65 7 2467 114 8 3 chr1 276954722 276955080 -5238584 - THE1B LTR MaLR -2 362 3 308 306 118 12 chr1 276955092 276955262 -5238402 - MIR SINE MIR -74 188 1 1064 117 53 21 chr1 276956059 276956247 -5237417 + AluJo SINE Alu 11 204 -108 1309 161 55 29 chr1 276956371 276956668 -5236996 - AluJb SINE Alu 0 308 5 204 257 29 71 chr1 276956950 276957020 -5236644 - L2 LINE L2 0 3272 3206 199 357 0 0 chr1 276957180 276957236 -5236428 - L2 LINE L2 -8 3264 3209 21 0 0 0 chr1 276957950 276957971 -5235693 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr1 276958327 276958365 -5235299 + AT_rich Low_complexity Low_complexity 1 38 0 2045 234 91 5 chr1 276958829 276959414 -5234250 - L1MEc LINE L1 -1486 4729 4095 * 3745 236 46 22 chr1 276959413 276960517 -5233147 + L1MC4a LINE L1 6670 7800 -8 1695 249 48 31 chr1 276960527 276961173 -5232491 - L1MEc LINE L1 -2108 4107 3451 * 2274 231 94 42 chr1 276961172 276961480 -5232184 - L1MEc LINE L1 -3139 3076 2785 2410 124 55 29 chr1 276961480 276961900 -5231764 - Tigger2a DNA MER2_type -3 431 1 2274 231 94 42 chr1 276961900 276962165 -5231499 - L1MEc LINE L1 -3430 2785 2535 733 208 0 0 chr1 276962165 276962295 -5231369 - FLAM_A SINE Alu 0 133 4 2274 231 94 42 chr1 276962295 276963039 -5230625 - L1MEc LINE L1 -3680 2535 1710 237 276 26 13 chr1 276963366 276963442 -5230222 - L2 LINE L2 -631 2683 2607 2335 166 10 10 chr1 276964608 276965266 -5228398 + L1P5 LINE L1 4976 5632 -522 10086 113 32 20 chr1 276965410 276966971 -5226693 + THE1C-int LTR MaLR 1 1580 0 2206 111 62 0 chr1 276966971 276967324 -5226340 + THE1C LTR MaLR 1 375 0 898 89 32 0 chr1 276967324 276967447 -5226217 - Tigger3(Golem) DNA MER2_type -52 2977 2851 1343 99 0 0 chr1 276967983 276968164 -5225500 - AluSg/x SINE Alu -3 307 127 633 263 30 30 chr1 276968498 276968696 -5224968 + MIR SINE MIR 1 198 -64 2145 123 13 3 chr1 276968697 276969006 -5224658 + AluSx SINE Alu 1 312 0 387 0 0 0 chr1 276969006 276969049 -5224615 + (TA)n Simple_repeat Simple_repeat 2 44 0 4236 75 2 0 chr1 276969435 276969994 -5223670 - L1PA7 LINE L1 -1516 4630 4071 7025 52 7 3 chr1 276969994 276971526 -5222138 + L1PA7 LINE L1 4648 6154 0 237 238 16 16 chr1 276971963 276972026 -5221638 + CT-rich Low_complexity Low_complexity 4 66 0 27 0 0 0 chr1 276972272 276972299 -5221365 + AT_rich Low_complexity Low_complexity 1 27 0 184 328 17 0 chr1 276972321 276972379 -5221285 - L2 LINE L2 -8 3305 3247 581 215 145 47 chr1 276972401 276972615 -5221049 - MIR SINE MIR -6 256 22 26 0 0 0 chr1 276973346 276973372 -5220292 + AT_rich Low_complexity Low_complexity 1 26 0 387 332 86 22 chr1 276973751 276973983 -5219681 - MIR SINE MIR -6 256 10 451 248 8 41 chr1 276974195 276974316 -5219348 + MIR3 SINE MIR 83 199 -9 192 152 0 0 chr1 276974420 276974453 -5219211 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2547 144 44 7 chr1 276976347 276976783 -5216881 - Tigger2 DNA MER2_type 0 2718 2267 381 221 0 0 chr1 276976768 276976836 -5216828 - Tigger2 DNA MER2_type -2650 68 1 * 319 325 70 60 chr1 276976922 276977122 -5216542 + MIR SINE MIR 20 221 -41 216 111 0 0 chr1 276977344 276977380 -5216284 + (TTG)n Simple_repeat Simple_repeat 3 38 0 2267 85 0 7 chr1 276977577 276977871 -5215793 - AluSx SINE Alu -15 297 6 27 62 0 0 chr1 276978139 276978187 -5215477 + AT_rich Low_complexity Low_complexity 1 48 0 304 313 87 61 chr1 276978790 276979215 -5214449 - L2 LINE L2 -655 2659 2224 888 298 123 42 chr1 276979294 276979743 -5213921 + L2 LINE L2 2826 3310 -3 2164 116 0 3 chr1 276980180 276980472 -5213192 + AluSx SINE Alu 1 291 -21 1154 205 27 0 chr1 276980620 276980844 -5212820 + L1PA16 LINE L1 5917 6146 -20 548 256 81 58 chr1 276980858 276981240 -5212424 - L1MC5 LINE L1 -281 7680 7290 452 336 41 10 chr1 276981207 276981502 -5212162 - L1MC4 LINE L1 -549 7493 7190 * 2383 80 0 3 chr1 276981770 276982071 -5211593 + AluSc SINE Alu 3 302 -7 261 289 11 0 chr1 276982189 276982279 -5211385 + L1ME4a LINE L1 5777 5867 -1941 250 191 12 71 chr1 276982350 276982434 -5211230 + L1ME4a LINE L1 5992 6070 -51 477 122 20 20 chr1 276982497 276982595 -5211069 + L1MB3 LINE L1 6084 6181 -2 491 335 36 22 chr1 276983786 276984010 -5209654 + MIR SINE MIR 20 246 -16 2420 63 3 10 chr1 276984303 276984604 -5209060 + AluY SINE Alu 1 299 -12 232 324 59 29 chr1 276985651 276985753 -5207911 + L2 LINE L2 3205 3309 -4 360 271 49 8 chr1 276986090 276986212 -5207452 - MIR SINE MIR -122 140 14 1854 330 45 20 chr1 276986782 276987486 -5206178 + L2 LINE L2 950 1671 -1643 1424 242 135 55 chr1 276987481 276988364 -5205300 - L2 LINE L2 -4 3309 2337 * 1153 263 10 23 chr1 276988515 276988823 -5204841 + Tigger5 DNA MER2_type 4 307 -2016 * 1292 167 0 5 chr1 276988819 276989041 -5204623 + Tigger5 DNA MER2_type 2103 2323 0 2016 113 0 0 chr1 276989379 276989654 -5204010 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr1 276989658 276989678 -5203986 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 393 315 128 23 chr1 276989911 276990130 -5203534 - MIR SINE MIR 0 262 21 270 282 16 141 chr1 276990399 276990654 -5203010 - L2 LINE L2 -218 3054 2832 33 25 0 0 chr1 276990980 276991020 -5202644 + AT_rich Low_complexity Low_complexity 1 40 0 2479 63 0 25 chr1 276991179 276991497 -5202167 + AluY SINE Alu 1 310 -1 371 311 62 6 chr1 276991572 276991733 -5201931 + MER117 DNA MER1_type 2 171 -26 199 236 69 28 chr1 276991880 276991952 -5201712 - MIR SINE MIR -59 203 129 245 174 0 0 chr1 276992625 276992671 -5200993 - L1ME LINE L1 -266 5855 5810 3451 22 0 0 chr1 276992962 276993364 -5200300 - L1PA3 LINE L1 0 6155 5754 6059 103 14 2 chr1 276993464 276993640 -5200024 + L1PA10 LINE L1 4726 4898 -1270 195 69 0 0 chr1 276993640 276993669 -5199995 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 2082 136 0 0 chr1 276993669 276993949 -5199715 - AluSx SINE Alu -32 280 1 6059 103 14 2 chr1 276993949 276995203 -5198461 + L1PA10 LINE L1 4897 6164 -4 12790 191 29 37 chr1 276996545 276999645 -5194019 + L1PA16 LINE L1 5 3127 -3742 227 111 0 0 chr1 276999645 276999690 -5193974 - LTR66 LTR ERVL -172 438 394 12790 191 29 37 chr1 276999690 277003382 -5190282 + L1PA16 LINE L1 3127 6869 0 22 0 0 0 chr1 277003486 277003508 -5190156 + AT_rich Low_complexity Low_complexity 1 22 0 226 339 71 0 chr1 277003643 277003755 -5189909 + L1ME LINE L1 5474 5593 -528 1797 155 3 3 chr1 277003816 277004101 -5189563 + AluSx SINE Alu 2 287 -21 246 32 0 0 chr1 277004101 277004132 -5189532 + (CATA)n Simple_repeat Simple_repeat 2 32 0 27 49 0 0 chr1 277004266 277004307 -5189357 + AT_rich Low_complexity Low_complexity 1 41 0 616 323 89 25 chr1 277004421 277004814 -5188850 + L1ME1 LINE L1 112 529 -5867 4304 177 50 53 chr1 277005035 277005512 -5188152 + L1MA10 LINE L1 4799 5276 -1058 2418 87 7 0 chr1 277005512 277005821 -5187843 + AluSq SINE Alu 1 311 -2 4304 177 50 53 chr1 277005821 277006882 -5186782 + L1MA10 LINE L1 5276 6322 -12 751 257 201 3 chr1 277006925 277007379 -5186285 + L1ME1 LINE L1 795 1299 -4916 3290 279 72 37 chr1 277007393 277008540 -5185124 + L1ME1 LINE L1 174 1406 -4990 2449 74 0 0 chr1 277008540 277008850 -5184814 + AluY SINE Alu 1 310 -1 3290 279 72 37 chr1 277008850 277009477 -5184187 + L1ME1 LINE L1 1406 2010 -4386 4123 256 81 29 chr1 277009499 277009898 -5183766 + L1ME1 LINE L1 3544 3921 -2482 1713 163 24 17 chr1 277009898 277010186 -5183478 + AluSx SINE Alu 1 290 -22 4123 256 81 29 chr1 277010186 277011102 -5182562 + L1ME1 LINE L1 3921 4787 -1616 1237 197 91 23 chr1 277011102 277011366 -5182298 - AluJo SINE Alu -30 282 1 4123 256 81 29 chr1 277011366 277011526 -5182138 + L1ME1 LINE L1 4787 4937 -1466 4898 166 119 9 chr1 277011526 277012633 -5181031 - Tigger3b DNA MER2_type 0 1231 3 4123 256 81 29 chr1 277012633 277013722 -5179942 + L1ME1 LINE L1 4937 6402 -1 248 268 0 0 chr1 277013716 277013787 -5179877 + L1ME1 LINE L1 5794 5864 -326 * 225 0 0 0 chr1 277013982 277014007 -5179657 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1558 163 44 7 chr1 277014009 277014279 -5179385 - AluJb SINE Alu -32 280 1 267 270 36 45 chr1 277014285 277014396 -5179268 + L2 LINE L2 3203 3312 -1 184 347 0 14 chr1 277014597 277014669 -5178995 + L2 LINE L2 3242 3312 -1 21 36 0 0 chr1 277015296 277015324 -5178340 + AT_rich Low_complexity Low_complexity 1 28 0 314 221 115 18 chr1 277015504 277015617 -5178047 + L1MA10 LINE L1 6211 6334 0 * 966 226 56 102 chr1 277015596 277016127 -5177537 + L1ME1 LINE L1 1459 2109 -4287 3481 224 53 29 chr1 277016138 277017227 -5176437 + L1ME1 LINE L1 4027 5141 -1074 233 311 59 8 chr1 277017257 277017376 -5176288 + L1ME1 LINE L1 5120 5244 -971 678 276 31 0 chr1 277017385 277017581 -5176083 + L1ME1 LINE L1 5956 6157 -9 1828 234 70 7 chr1 277017638 277018300 -5175364 + L1ME1 LINE L1 5261 5967 -268 330 222 93 56 chr1 277018401 277018509 -5175155 + MLT1G LTR MaLR 175 286 -304 22 0 0 0 chr1 277018968 277018990 -5174674 + AT_rich Low_complexity Low_complexity 1 22 0 2264 110 3 0 chr1 277020380 277020679 -5172985 - AluSp SINE Alu -12 301 2 1465 219 7 16 chr1 277021507 277021813 -5171851 - AluJo SINE Alu -9 303 1 2381 90 0 14 chr1 277022306 277022650 -5171014 + L1PA7 LINE L1 5798 6136 -18 183 156 0 0 chr1 277022651 277022683 -5170981 + (TATG)n Simple_repeat Simple_repeat 3 34 0 * 535 108 21 0 chr1 277022682 277022775 -5170889 + (CA)n Simple_repeat Simple_repeat 2 96 0 3019 262 84 32 chr1 277022778 277023794 -5169870 + L1MEc LINE L1 2794 3756 -2459 2083 142 3 0 chr1 277023794 277024104 -5169560 - AluSx SINE Alu -1 311 1 3019 262 84 32 chr1 277024104 277024562 -5169102 + L1MEc LINE L1 3756 4189 -2026 1928 160 51 3 chr1 277024562 277024894 -5168770 - MER7A DNA MER2_type 0 346 1 3019 262 84 32 chr1 277024894 277025134 -5168530 + L1MEc LINE L1 4189 4728 -1487 2147 123 7 0 chr1 277025425 277025718 -5167946 + AluSx SINE Alu 1 295 -17 346 220 77 11 chr1 277026943 277027034 -5166630 + MIR SINE MIR 7 103 -159 516 304 126 17 chr1 277027489 277027719 -5165945 - MIR SINE MIR -2 260 6 2294 60 23 10 chr1 277029470 277029772 -5163892 + AluY SINE Alu 1 306 -5 1725 184 7 7 chr1 277030121 277030420 -5163244 - AluJb SINE Alu -13 299 1 22 0 0 0 chr1 277030453 277030475 -5163189 + AT_rich Low_complexity Low_complexity 1 22 0 288 41 122 0 chr1 277030704 277030753 -5162911 - MLT2A2 LTR ERVL 0 444 390 318 106 0 0 chr1 277030753 277030800 -5162864 + (TG)n Simple_repeat Simple_repeat 2 48 0 2935 84 30 0 chr1 277030825 277031218 -5162446 - MLT2A2 LTR ERVL -47 406 2 632 244 82 111 chr1 277031218 277031766 -5161898 - MLT1H1 LTR MaLR -17 538 1 2890 148 6 26 chr1 277032181 277032675 -5160989 - MER41B LTR ERV1 -38 597 114 1932 237 34 19 chr1 277032675 277033291 -5160373 - L1M4 LINE L1 -2485 3661 3037 455 245 47 47 chr1 277034026 277034218 -5159446 - HAL1 LINE L1 -848 1659 1468 21 0 0 0 chr1 277034898 277034919 -5158745 + AT_rich Low_complexity Low_complexity 1 21 0 378 257 29 59 chr1 277035358 277035494 -5158170 + MER20 DNA MER1_type 28 159 -60 199 269 154 10 chr1 277035501 277035605 -5158059 + MIR SINE MIR 117 235 -27 463 273 9 0 chr1 277035663 277035773 -5157891 + MIR SINE MIR 95 205 -57 201 122 41 41 chr1 277035790 277035839 -5157825 + (TTAAA)n Simple_repeat Simple_repeat 5 53 0 234 185 0 46 chr1 277035842 277035907 -5157757 + (TTA)n Simple_repeat Simple_repeat 1 62 0 1380 202 22 13 chr1 277036240 277036552 -5157112 - L1MC4a LINE L1 -441 7367 7053 * 2526 200 100 37 chr1 277036546 277037445 -5156219 - L1M4 LINE L1 -2885 3497 2542 1455 143 21 125 chr1 277037447 277037742 -5155922 + MER44D DNA MER2_type 1 520 -1971 1244 192 130 16 chr1 277037742 277038050 -5155614 - MER2 DNA MER2_type 0 344 2 1455 143 21 125 chr1 277038050 277038131 -5155533 + MER44D DNA MER2_type 520 608 -1 2699 160 35 19 chr1 277038180 277039051 -5154613 - L1M4 LINE L1 -3910 2474 1498 9890 133 42 27 chr1 277039051 277040487 -5153177 + Tigger1 DNA MER2_type 635 2102 -316 1898 131 84 0 chr1 277040487 277040761 -5152903 + AluSx SINE Alu 2 298 -14 9890 133 42 27 chr1 277040761 277041083 -5152581 + Tigger1 DNA MER2_type 2102 2418 0 298 135 0 0 chr1 277041300 277041352 -5152312 + HAL1b LINE L1 746 797 -551 22 0 0 0 chr1 277041389 277041411 -5152253 + AT_rich Low_complexity Low_complexity 1 22 0 1776 199 36 69 chr1 277041411 277041858 -5151806 + MLT1-int LTR MaLR 877 1308 -63 1586 269 34 72 chr1 277041873 277042265 -5151399 - MER77-int LTR ERV1 -1038 3153 2790 2451 73 0 0 chr1 277042265 277042565 -5151099 - AluY SINE Alu -11 300 1 1586 269 34 72 chr1 277042565 277042768 -5150896 - MER77-int LTR ERV1 -1401 2790 2581 2244 111 7 3 chr1 277042773 277043080 -5150584 - AluSq SINE Alu -4 309 2 1514 251 56 94 chr1 277043081 277043471 -5150193 - MER77-int LTR ERV1 -1583 2608 2254 1511 170 13 37 chr1 277043471 277043771 -5149893 + AluJb SINE Alu 1 293 -19 1514 251 56 94 chr1 277043771 277044072 -5149592 - MER77-int LTR ERV1 -1937 2254 1943 255 323 62 44 chr1 277044373 277044714 -5148950 - MERVL LTR ERVL -2613 2872 2526 879 136 0 23 chr1 277044731 277044863 -5148801 - FLAM_C SINE Alu -3 130 2 2879 279 47 40 chr1 277045419 277046625 -5147039 - MER77-int LTR ERV1 -2227 4531 3317 2165 126 0 3 chr1 277046643 277046952 -5146712 + AluSx SINE Alu 1 308 -4 795 275 21 13 chr1 277047713 277047949 -5145715 - MER77-int LTR ERV1 -3908 283 46 1022 185 77 0 chr1 277047984 277048179 -5145485 - MER77 LTR ERV1 0 605 396 2458 190 62 57 chr1 277048190 277048721 -5144943 - MLT2B3 LTR ERVL -6 548 15 1423 210 78 70 chr1 277048742 277049127 -5144537 - MER77 LTR ERV1 -216 389 2 2578 281 84 38 chr1 277049482 277050771 -5142893 - L2 LINE L2 0 3313 1962 207 111 0 56 chr1 277050874 277050910 -5142754 + MIR SINE MIR 34 67 -141 405 136 0 0 chr1 277051629 277051695 -5141969 + L1M1 LINE L1 5384 5449 -854 1628 188 18 21 chr1 277051695 277052025 -5141639 - THE1C LTR MaLR 0 375 47 227 234 0 0 chr1 277052126 277052173 -5141491 - Alu SINE Alu -136 164 118 369 0 0 0 chr1 277052440 277052481 -5141183 + (TG)n Simple_repeat Simple_repeat 2 42 0 1624 157 0 0 chr1 277052529 277052765 -5140899 + AluSx SINE Alu 41 276 -36 260 297 81 18 chr1 277053115 277053226 -5140438 + L2 LINE L2 3184 3301 -12 324 338 110 32 chr1 277053405 277053559 -5140105 - L2 LINE L2 0 3272 3107 659 238 219 21 chr1 277053912 277054240 -5139424 - L1MC4a LINE L1 -1879 5929 5537 1616 197 0 7 chr1 277054513 277054808 -5138856 + AluJb SINE Alu 1 293 -19 1854 144 3 23 chr1 277055223 277055522 -5138142 - AluJb SINE Alu -13 299 7 22 0 0 0 chr1 277055665 277055687 -5137977 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr1 277055812 277055833 -5137831 + AT_rich Low_complexity Low_complexity 1 21 0 2349 97 0 0 chr1 277055872 277056170 -5137494 + AluSc SINE Alu 1 298 -11 366 278 0 0 chr1 277056174 277056264 -5137400 - L1MC4 LINE L1 -1339 6703 6614 231 229 0 0 chr1 277056266 277056327 -5137337 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 1392 185 4 36 chr1 277058857 277059133 -5134531 - AluJo SINE Alu -24 288 22 1499 97 23 0 chr1 277059175 277059392 -5134272 - L1PB1 LINE L1 0 6151 5930 225 0 0 0 chr1 277059421 277059446 -5134218 + (A)n Simple_repeat Simple_repeat 1 25 0 256 358 0 12 chr1 277060115 277060196 -5133468 + L2 LINE L2 3189 3268 -4 210 71 0 0 chr1 277060246 277060274 -5133390 + (CCCA)n Simple_repeat Simple_repeat 3 30 0 277 321 75 9 chr1 277060280 277060386 -5133278 - L2 LINE L2 -9 3304 3192 248 311 92 41 chr1 277060518 277060714 -5132950 - L2 LINE L2 -1 3312 3107 280 296 28 19 chr1 277060857 277060965 -5132699 - L2 LINE L2 -672 2642 2534 4005 158 81 4 chr1 277062339 277063128 -5130536 - L1MA4 LINE L1 -7 6293 5444 491 177 88 8 chr1 277064019 277064157 -5129507 + L1MA4 LINE L1 6151 6295 -5 23 0 0 0 chr1 277065200 277065223 -5128441 + AT_rich Low_complexity Low_complexity 1 23 0 501 133 143 20 chr1 277065508 277065606 -5128058 - FLAM_A SINE Alu -5 137 28 1616 177 43 20 chr1 277065703 277066002 -5127662 + AluJb SINE Alu 7 312 0 324 368 0 38 chr1 277066785 277066918 -5126746 + MIR3 SINE MIR 34 161 -47 691 335 142 43 chr1 277066956 277068127 -5125537 - L2 LINE L2 -56 3216 1907 248 203 0 34 chr1 277068161 277068220 -5125444 + MER34 LTR ERV1 68 124 -418 * 1178 216 81 70 chr1 277068193 277068475 -5125189 + MER39 LTR ERV1 259 549 -158 2243 94 7 17 chr1 277068475 277068772 -5124892 + AluSx SINE Alu 1 294 -18 1178 216 81 70 chr1 277068772 277068933 -5124731 + MER39 LTR ERV1 549 707 0 208 349 137 20 chr1 277068933 277069079 -5124585 - L2 LINE L2 -1396 1918 1756 504 0 0 0 chr1 277069267 277069323 -5124341 + (TA)n Simple_repeat Simple_repeat 1 56 0 286 333 0 0 chr1 277069476 277069560 -5124104 + L2 LINE L2 2950 3033 -239 222 296 25 86 chr1 277069559 277069721 -5123943 - MIR3 SINE MIR -4 204 53 * 3227 208 86 9 chr1 277073050 277073868 -5119796 - Charlie1 DNA MER1_type 0 2761 1881 594 0 0 0 chr1 277075492 277075558 -5118106 + (TA)n Simple_repeat Simple_repeat 1 66 0 1103 246 117 64 chr1 277075686 277076157 -5117507 + MLT1D LTR MaLR 2 497 -8 2337 92 0 0 chr1 277076551 277076846 -5116818 - AluSc SINE Alu -14 295 1 611 278 135 9 chr1 277078362 277078592 -5115072 + MIR SINE MIR 2 260 -2 2169 109 6 6 chr1 277079523 277079835 -5113829 + AluSx SINE Alu 1 312 0 284 292 119 6 chr1 277080290 277080443 -5113221 - L2 LINE L2 -2 3311 3146 248 130 43 0 chr1 277081201 277081247 -5112417 - U2 snRNA snRNA -140 48 1 223 269 195 20 chr1 277082797 277082946 -5110718 - MIR SINE MIR -35 227 53 774 266 122 18 chr1 277082947 277083169 -5110495 + MIR SINE MIR 13 257 -5 442 109 0 0 chr1 277083657 277083721 -5109943 - L1PA16 LINE L1 -16 6150 6087 22 56 0 0 chr1 277085754 277085790 -5107874 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr1 277086347 277086389 -5107275 + AT_rich Low_complexity Low_complexity 1 42 0 185 179 13 141 chr1 277086823 277086901 -5106763 + MIR3 SINE MIR 102 169 -39 1979 118 6 29 chr1 277087083 277087396 -5106268 + AluSg SINE Alu 1 306 -4 252 0 0 0 chr1 277089789 277089817 -5103847 + (A)n Simple_repeat Simple_repeat 1 28 0 211 226 97 0 chr1 277090666 277090728 -5102936 - L2 LINE L2 0 3313 3246 25 51 0 0 chr1 277093472 277093511 -5100153 + AT_rich Low_complexity Low_complexity 1 39 0 265 404 0 0 chr1 277093712 277093811 -5099853 + L3 LINE CR1 1468 1566 -11 24 0 0 0 chr1 277093977 277094001 -5099663 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr1 277094404 277094458 -5099206 + AT_rich Low_complexity Low_complexity 1 54 0 1981 84 6 75 chr1 277094494 277094815 -5098849 - AluY SINE Alu -12 299 1 632 275 93 24 chr1 277095577 277095976 -5097688 - MLT1J2 LTR MaLR 0 450 1 1745 117 57 13 chr1 277096073 277096373 -5097291 + AluSp SINE Alu 1 313 0 319 88 0 18 chr1 277096376 277096433 -5097231 + L1MB4 LINE L1 6124 6179 -1 2132 116 0 3 chr1 277096691 277096983 -5096681 - AluSx SINE Alu -21 291 1 899 298 123 42 chr1 277097420 277097869 -5095795 - L2 LINE L2 -3 3310 2826 278 315 87 61 chr1 277097948 277098373 -5095291 + L2 LINE L2 2224 2659 -655 27 62 0 0 chr1 277098976 277099024 -5094640 + AT_rich Low_complexity Low_complexity 1 48 0 2232 85 0 7 chr1 277099292 277099586 -5094078 + AluSx SINE Alu 6 297 -15 216 111 0 0 chr1 277099783 277099819 -5093845 + (CAA)n Simple_repeat Simple_repeat 3 38 0 319 325 70 60 chr1 277100041 277100241 -5093423 - MIR SINE MIR -41 221 20 381 221 0 0 chr1 277100327 277100395 -5093269 + Tigger2 DNA MER2_type 1 68 -2650 * 2562 142 44 7 chr1 277100380 277100816 -5092848 + Tigger2 DNA MER2_type 2267 2718 0 192 152 0 0 chr1 277102710 277102743 -5090921 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 451 248 8 41 chr1 277102847 277102968 -5090696 - MIR3 SINE MIR -9 199 83 387 332 86 22 chr1 277103180 277103412 -5090252 + MIR SINE MIR 10 256 -6 26 0 0 0 chr1 277103791 277103817 -5089847 + AT_rich Low_complexity Low_complexity 1 26 0 581 215 145 47 chr1 277104548 277104762 -5088902 + MIR SINE MIR 22 256 -6 184 328 17 0 chr1 277104784 277104842 -5088822 + L2 LINE L2 3247 3305 -8 27 0 0 0 chr1 277104864 277104891 -5088773 + AT_rich Low_complexity Low_complexity 1 27 0 237 238 16 16 chr1 277105137 277105200 -5088464 + GA-rich Low_complexity Low_complexity 4 66 0 12190 83 13 1 chr1 277105637 277108110 -5085554 - L1PA7 LINE L1 0 6154 3664 5350 98 34 30 chr1 277108110 277108272 -5085392 + L1P LINE L1 1692 1852 -4294 1880 130 3 7 chr1 277108272 277108557 -5085107 - AluSx SINE Alu -8 304 21 5350 98 34 30 chr1 277108557 277109242 -5084422 + L1P LINE L1 1852 2543 -3603 3537 81 10 10 chr1 277109237 277109745 -5083919 + L1P LINE L1 3153 3660 -2486 * 727 285 176 5 chr1 277109745 277110159 -5083505 - L1MEc LINE L1 -3414 2801 2317 824 151 0 0 chr1 277110727 277110846 -5082818 - FLAM_C SINE Alu -24 119 1 438 320 60 31 chr1 277111069 277111519 -5082145 - L1MEc LINE L1 -4923 1473 1011 192 293 0 141 chr1 277112760 277112951 -5080713 - L2 LINE L2 -240 3032 2869 1510 211 49 0 chr1 277113305 277113609 -5080055 + MLT1A1 LTR MaLR 47 365 0 4776 172 38 28 chr1 277113609 277114986 -5078678 + L1MB1 LINE L1 4377 5786 -382 1341 167 69 31 chr1 277114986 277115274 -5078390 + AluJo SINE Alu 1 299 -13 4776 172 38 28 chr1 277115274 277115656 -5078008 + L1MB1 LINE L1 5786 6163 -5 230 314 48 0 chr1 277115850 277115974 -5077690 + L1P LINE L1 4877 5006 -1140 3741 37 0 0 chr1 277116095 277116556 -5077108 - L1P1 LINE L1 -2382 3764 3304 * 13643 25 4 0 chr1 277116553 277118268 -5075396 + L1P1 LINE L1 3755 5476 -679 294 270 108 88 chr1 277118425 277118629 -5075035 + L1MC4 LINE L1 5504 5711 -2097 491 216 37 45 chr1 277118629 277118763 -5074901 + Charlie1 DNA MER1_type 2290 2422 -339 438 241 17 17 chr1 277118766 277118882 -5074782 + L1MC4 LINE L1 5730 5845 -1963 191 344 54 21 chr1 277119377 277119470 -5074194 + L2 LINE L2 2979 3074 -198 875 133 6 54 chr1 277120492 277120658 -5073006 - AluJb SINE Alu -152 160 3 4560 224 109 11 chr1 277121300 277122625 -5071039 + L1MC4 LINE L1 6458 7913 -129 2163 96 3 7 chr1 277122628 277122930 -5070734 + AluSq SINE Alu 7 307 -6 324 98 0 0 chr1 277122930 277122981 -5070683 + L1MC4 LINE L1 7992 8042 0 1215 131 6 11 chr1 277123053 277123236 -5070428 - AluSg/x SINE Alu -18 294 113 198 0 0 0 chr1 277123391 277123413 -5070251 + (A)n Simple_repeat Simple_repeat 1 22 0 3551 145 35 39 chr1 277123871 277124581 -5069083 + MER39 LTR ERV1 1 707 0 1219 194 60 32 chr1 277126605 277126888 -5066776 + AluJo SINE Alu 2 292 -10 1559 142 67 92 chr1 277127520 277127866 -5065798 + MER1B DNA MER1_type 1 337 0 319 349 12 15 chr1 277128159 277128308 -5065356 + MIR SINE MIR 18 163 -62 1149 184 149 23 chr1 277128308 277128616 -5065048 - MLT1A2 LTR MaLR 0 390 29 2134 110 0 0 chr1 277129465 277129773 -5063891 + AluY SINE Alu 1 308 0 1821 171 0 0 chr1 277129785 277130066 -5063598 + AluJb SINE Alu 4 284 -28 21 0 0 0 chr1 277130166 277130187 -5063477 + AT_rich Low_complexity Low_complexity 1 21 0 216 267 92 50 chr1 277131183 277131303 -5062361 - MIR SINE MIR -6 256 132 812 164 0 0 chr1 277131322 277131456 -5062208 - FAM SINE Alu -30 155 22 198 204 27 113 chr1 277131457 277131557 -5062107 - MIR SINE MIR -67 141 57 200 59 29 0 chr1 277131718 277131752 -5061912 + (TA)n Simple_repeat Simple_repeat 1 35 0 1520 32 0 11 chr1 277131752 277131930 -5061734 - L1PA5 LINE L1 -7 6147 5970 823 265 144 34 chr1 277132128 277132531 -5061133 - L2 LINE L2 -33 3280 2789 1852 116 34 85 chr1 277132531 277132885 -5060779 - MER1B DNA MER1_type 0 337 2 823 265 144 34 chr1 277132885 277133033 -5060631 - L2 LINE L2 -524 2789 2659 1900 125 0 21 chr1 277133034 277133313 -5060351 + AluJb SINE Alu 11 283 -29 264 30 0 0 chr1 277133318 277133351 -5060313 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 26 50 0 0 chr1 277133521 277133561 -5060103 + AT_rich Low_complexity Low_complexity 1 40 0 1536 193 7 27 chr1 277134117 277134418 -5059246 - AluJo SINE Alu -17 295 1 2789 191 70 7 chr1 277134472 277135074 -5058590 - MER82 DNA MER2_type -3 650 11 274 198 37 12 chr1 277135276 277135357 -5058307 + L1MDa LINE L1 1313 1395 -5145 244 308 15 23 chr1 277135346 277135476 -5058188 + L1MDa LINE L1 1871 1999 -4722 * 1119 150 16 1 chr1 277135467 277135662 -5058002 + L1MB3 LINE L1 5738 5935 -248 249 246 33 0 chr1 277139400 277139461 -5054203 + L2 LINE L2 1846 1908 -1406 267 210 48 53 chr1 277139466 277139597 -5054067 - L2 LINE L2 -4 3309 3127 229 300 62 25 chr1 277140024 277140104 -5053560 + L2 LINE L2 3200 3282 -31 233 200 0 40 chr1 277140240 277140290 -5053374 - L2 LINE L2 0 3272 3225 28 29 0 0 chr1 277140323 277140358 -5053306 + AT_rich Low_complexity Low_complexity 1 35 0 648 201 82 32 chr1 277141599 277141818 -5051846 + L1MC5 LINE L1 7683 7912 -49 31 42 0 42 chr1 277142178 277142249 -5051415 + AT_rich Low_complexity Low_complexity 1 68 0 32 26 0 0 chr1 277142285 277142324 -5051340 + AT_rich Low_complexity Low_complexity 1 39 0 213 397 15 29 chr1 277142493 277142629 -5051035 + L2 LINE L2 2977 3110 -162 1985 126 14 0 chr1 277142684 277142977 -5050687 + AluSg SINE Alu 1 297 -13 3493 191 69 32 chr1 277142984 277144292 -5049372 - L1MB7 LINE L1 -27 6157 4796 228 229 21 0 chr1 277144320 277144368 -5049296 + L2 LINE L2 3252 3300 -13 476 321 38 33 chr1 277144390 277144574 -5049090 - MIR3 SINE MIR -1 207 23 381 296 29 93 chr1 277145276 277145556 -5048108 + L2 LINE L2 3007 3268 -4 5336 49 15 2 chr1 277145884 277146806 -5046858 + L1P2 LINE L1 4706 5641 -514 1617 168 46 23 chr1 277147759 277148062 -5045602 + AluJo SINE Alu 1 310 -2 183 258 98 68 chr1 277148145 277148277 -5045387 - L2 LINE L2 -221 3051 2916 216 0 0 0 chr1 277150128 277150152 -5043512 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1457 184 52 4 chr1 277150152 277150419 -5043245 - AluJo SINE Alu -32 280 1 21 71 0 0 chr1 277150666 277150708 -5042956 + AT_rich Low_complexity Low_complexity 1 42 0 386 273 196 29 chr1 277150880 277151237 -5042427 + MER110A LTR ERV1 1 453 -15 467 332 164 25 chr1 277151726 277152244 -5041420 - L2 LINE L2 -1177 2137 1548 366 271 7 43 chr1 277152282 277152422 -5041242 + L1ME4a LINE L1 5536 5670 -451 308 234 96 21 chr1 277152466 277152560 -5041104 + L1ME4a LINE L1 5812 5912 -209 1911 216 77 142 chr1 277152811 277153976 -5039688 + MER52A LTR ERV1 666 1755 0 427 292 76 13 chr1 277154564 277154752 -5038912 + MIR SINE MIR 38 236 -26 333 174 51 31 chr1 277154791 277154889 -5038775 + MER113 DNA MER1_type? 30 129 -392 378 200 47 0 chr1 277154915 277155000 -5038664 + MER89 LTR ERV1 1 89 -470 716 214 128 5 chr1 277155057 277155244 -5038420 + MER89 LTR ERV1 277 486 -73 290 229 34 120 chr1 277156193 277156368 -5037296 + L1ME LINE L1 5723 5882 -284 972 155 84 14 chr1 277156444 277156657 -5037007 - Tigger1 DNA MER2_type -1 2417 2190 792 156 15 7 chr1 277156649 277156784 -5036880 - Tigger1 DNA MER2_type -2282 136 1 * 285 203 76 85 chr1 277156926 277157044 -5036620 + L2 LINE L2 3197 3313 0 6052 126 138 16 chr1 277157179 277158275 -5035389 - Tigger3b DNA MER2_type 0 1231 2 658 284 58 29 chr1 277158923 277159166 -5034498 + MIR SINE MIR 11 260 -2 323 345 64 18 chr1 277159802 277160022 -5033642 + L2 LINE L2 2826 3055 -217 * 675 275 44 6 chr1 277160014 277160196 -5033468 + MIR SINE MIR 59 247 -15 282 272 133 64 chr1 277161810 277161983 -5031681 + L2 LINE L2 2451 2635 -679 945 191 47 8 chr1 277161998 277162254 -5031410 - Charlie5 DNA MER1_type 0 2617 2352 546 187 102 37 chr1 277162252 277162439 -5031225 - Charlie5 DNA MER1_type -2412 200 2 * 375 320 0 10 chr1 277162784 277162881 -5030783 + L2 LINE L2 3160 3255 -17 484 214 164 21 chr1 277163397 277163537 -5030127 + MER58A DNA MER1_type 2 161 0 227 278 28 14 chr1 277164862 277164934 -5028730 - MER2 DNA MER2_type -5 340 268 666 170 9 0 chr1 277164964 277165070 -5028594 - MER2 DNA MER2_type -237 108 2 2178 115 3 0 chr1 277165206 277165502 -5028162 + AluSx SINE Alu 1 297 -15 326 252 25 59 chr1 277165859 277165978 -5027686 - MLT1J2 LTR MaLR -269 181 67 332 222 0 0 chr1 277166519 277166591 -5027073 + L1M2 LINE L1 5365 5436 -861 455 160 130 20 chr1 277166619 277166719 -5026945 + FLAM_C SINE Alu 17 127 -16 1503 263 168 3 chr1 277166723 277167301 -5026363 + L1ME3A LINE L1 5493 6165 -5 2761 13 0 0 chr1 277167318 277167621 -5026043 + AluYa5 SINE Alu 1 303 -8 1854 125 7 49 chr1 277167905 277168210 -5025454 + AluJb SINE Alu 1 292 -20 299 239 132 88 chr1 277168307 277168451 -5025213 - MIR3 SINE MIR -39 169 16 957 124 237 0 chr1 277168451 277168637 -5025027 - MER30 DNA MER1_type 0 230 1 299 239 132 88 chr1 277168637 277168651 -5025013 - MIR3 SINE MIR -192 16 4 283 358 186 3 chr1 277172023 277172319 -5021345 + L2 LINE L2 1751 2100 -1214 321 169 0 0 chr1 277172675 277172734 -5020930 + (CA)n Simple_repeat Simple_repeat 1 59 0 2225 121 0 0 chr1 277172867 277173165 -5020499 - AluSx SINE Alu -14 298 1 236 279 13 0 chr1 277176325 277176404 -5017260 - MER94 DNA DNA -36 98 19 526 218 33 144 chr1 277176653 277176786 -5016878 + MER20 DNA MER1_type 1 97 -122 1725 143 45 48 chr1 277176786 277177121 -5016543 + MER1B DNA MER1_type 4 337 0 526 218 33 144 chr1 277177121 277177230 -5016434 + MER20 DNA MER1_type 97 216 -3 226 289 144 10 chr1 277177232 277177329 -5016335 + L2 LINE L2 3204 3313 0 764 149 0 7 chr1 277177361 277177502 -5016162 - AluSg/x SINE Alu -22 288 149 291 28 0 0 chr1 277378280 277378316 -4815348 + (T)n Simple_repeat Simple_repeat 1 36 0 304 363 136 34 chr1 277379199 277379758 -4813906 + L2 LINE L2 2217 2832 -482 1236 218 82 0 chr1 277379841 277380121 -4813543 + AluJo SINE Alu 1 303 -9 353 252 73 16 chr1 277380234 277380357 -4813307 + L2 LINE L2 3184 3313 0 254 374 154 6 chr1 277380666 277381016 -4812648 + L2 LINE L2 2445 2846 -468 258 257 165 28 chr1 277381579 277381688 -4811976 + MER5C DNA MER1_type 1 124 -200 221 282 28 0 chr1 277381827 277381898 -4811766 + MER5C DNA MER1_type 249 321 -3 1572 163 87 22 chr1 277382132 277382523 -4811141 - MER31A LTR ERV1 -48 418 1 208 309 117 11 chr1 277384035 277384223 -4809441 + MIR SINE MIR 40 247 -15 2390 55 41 0 chr1 277384233 277384524 -4809140 + AluY SINE Alu 1 303 -8 281 298 153 8 chr1 277385401 277385532 -4808132 - L2 LINE L2 -14 3258 3109 218 363 32 38 chr1 277385800 277385957 -4807707 + L2 LINE L2 2642 2797 -517 864 137 6 60 chr1 277386139 277386169 -4807495 - L1M4 LINE L1 -713 5461 5431 2398 84 0 3 chr1 277386169 277386477 -4807187 - AluSx SINE Alu -5 307 1 864 137 6 60 chr1 277386477 277386628 -4807036 - L1M4 LINE L1 -743 5431 5290 327 308 211 5 chr1 277386686 277386894 -4806770 + MIR SINE MIR 2 252 -10 22 35 0 0 chr1 277387087 277387116 -4806548 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr1 277388048 277388071 -4805593 + (A)n Simple_repeat Simple_repeat 1 23 0 1979 125 24 0 chr1 277388293 277388582 -4805082 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 277388833 277388855 -4804809 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 277389143 277389181 -4804483 + AT_rich Low_complexity Low_complexity 1 38 0 2335 150 27 20 chr1 277390124 277390395 -4803269 - Tigger3b DNA MER2_type -1798 1231 954 1617 226 0 0 chr1 277390395 277390692 -4802972 + AluJo SINE Alu 1 297 -15 2335 150 27 20 chr1 277390692 277390860 -4802804 - Tigger3b DNA MER2_type -2075 954 789 347 127 0 16 chr1 277390860 277390923 -4802741 - Tigger3b DNA MER2_type -382 850 789 289 131 33 16 chr1 277390923 277390984 -4802680 - Tigger3b DNA MER2_type -382 849 788 408 79 0 16 chr1 277390984 277391047 -4802617 - Tigger3b DNA MER2_type -382 849 788 325 86 86 17 chr1 277391047 277391105 -4802559 - Tigger3b DNA MER2_type -382 850 789 279 148 33 16 chr1 277391105 277391166 -4802498 - Tigger3b DNA MER2_type -382 850 789 384 95 0 16 chr1 277391166 277391229 -4802435 - Tigger3b DNA MER2_type -382 849 788 391 95 0 16 chr1 277391229 277391292 -4802372 - Tigger3b DNA MER2_type -382 850 789 391 95 0 16 chr1 277391292 277391355 -4802309 - Tigger3b DNA MER2_type -382 849 788 289 131 33 16 chr1 277391355 277391416 -4802248 - Tigger3b DNA MER2_type -382 849 788 428 63 0 16 chr1 277391416 277391479 -4802185 - Tigger3b DNA MER2_type -382 849 788 391 95 0 16 chr1 277391479 277391542 -4802122 - Tigger3b DNA MER2_type -382 849 788 347 127 0 16 chr1 277391542 277391605 -4802059 - Tigger3b DNA MER2_type -382 849 788 413 79 0 16 chr1 277391605 277391668 -4801996 - Tigger3b DNA MER2_type -382 849 788 387 95 0 16 chr1 277391668 277391731 -4801933 - Tigger3b DNA MER2_type -382 850 789 391 95 0 16 chr1 277391731 277391794 -4801870 - Tigger3b DNA MER2_type -382 849 788 289 131 33 16 chr1 277391794 277391855 -4801809 - Tigger3b DNA MER2_type -382 849 788 370 111 0 16 chr1 277391855 277391918 -4801746 - Tigger3b DNA MER2_type -382 849 788 383 97 0 16 chr1 277391919 277391981 -4801683 - Tigger3b DNA MER2_type -383 848 788 4125 132 56 21 chr1 277391981 277392480 -4801184 - Tigger3b DNA MER2_type -2179 849 308 1639 203 0 10 chr1 277392480 277392776 -4800888 - AluJo SINE Alu -19 293 1 4125 132 56 21 chr1 277392776 277393094 -4800570 - Tigger3b DNA MER2_type -2720 308 3 1941 151 0 0 chr1 277393107 277393392 -4800272 - AluJb SINE Alu -6 306 22 248 294 22 52 chr1 277393604 277393740 -4799924 + L1ME2 LINE L1 6023 6154 -10 1826 159 7 7 chr1 277395194 277395484 -4798180 - AluJb SINE Alu -17 295 6 198 103 0 0 chr1 277397768 277397797 -4795867 + (GGA)n Simple_repeat Simple_repeat 3 31 0 742 185 0 0 chr1 277398692 277398811 -4794853 + FLAM_C SINE Alu 1 119 -14 412 169 28 17 chr1 277398862 277399039 -4794625 + (TA)n Simple_repeat Simple_repeat 1 179 0 2316 115 0 10 chr1 277399142 277399456 -4794208 + AluY SINE Alu 1 311 0 1684 176 13 23 chr1 277400733 277401034 -4792630 - AluJo SINE Alu -14 298 1 2412 54 14 7 chr1 277401859 277402156 -4791508 + AluY SINE Alu 1 299 -12 299 218 39 51 chr1 277403506 277403584 -4790080 - L2 LINE L2 -2 3311 3235 985 214 15 0 chr1 277403876 277404077 -4789587 + AluJo SINE Alu 86 289 -23 22 0 0 0 chr1 277406702 277406724 -4786940 + AT_rich Low_complexity Low_complexity 1 22 0 900 185 6 34 chr1 277408243 277408421 -4785243 + AluJo SINE Alu 124 296 -16 308 292 64 29 chr1 277409421 277409592 -4784072 - MIR3 SINE MIR -12 196 20 184 341 179 8 chr1 277410014 277410137 -4783527 - L3b LINE CR1 -338 1245 1102 1344 198 20 92 chr1 277411562 277411962 -4781702 + MLT1A2 LTR MaLR 4 374 0 1466 96 5 0 chr1 277412280 277412477 -4781187 - AluSg/x SINE Alu -21 289 92 2491 54 3 22 chr1 277412480 277412793 -4780871 - AluY SINE Alu -4 307 1 247 235 183 26 chr1 277413005 277413120 -4780544 - MIR3 SINE MIR 0 208 76 368 281 125 22 chr1 277413155 277413475 -4780189 - LTR37A LTR ERV1 0 426 74 1197 100 5 5 chr1 277414150 277414349 -4779315 + AluY SINE Alu 11 309 -2 636 117 78 0 chr1 277415462 277415590 -4778074 - L1MB4 LINE L1 -20 6160 6023 1855 169 3 0 chr1 277415712 277416008 -4777656 + AluJb SINE Alu 1 297 -15 633 146 0 19 chr1 277416047 277416150 -4777514 - U6 snRNA snRNA 0 107 7 209 343 109 0 chr1 277416264 277416401 -4777263 - MIR SINE MIR -38 224 73 251 344 22 0 chr1 277417140 277417230 -4776434 + MIR SINE MIR 41 132 -76 2476 82 0 0 chr1 277417338 277417642 -4776022 + AluSg SINE Alu 1 304 -6 249 328 76 25 chr1 277418677 277418796 -4774868 + MIR3 SINE MIR 14 138 -70 502 151 308 14 chr1 277418843 277418989 -4774675 + MER5A DNA MER1_type 1 189 0 1009 177 13 0 chr1 277419124 277419309 -4774355 - AluJo SINE Alu 0 308 122 506 167 0 0 chr1 277419354 277419444 -4774220 - MST-int LTR MaLR -243 1408 1319 884 159 0 21 chr1 277419444 277419589 -4774075 - AluJo SINE Alu -170 142 1 2137 119 0 3 chr1 277421298 277421600 -4772064 - AluSg SINE Alu -9 301 1 753 192 66 30 chr1 277421664 277421862 -4771802 - MER3 DNA MER1_type 0 209 5 195 129 0 0 chr1 277422639 277422670 -4770994 + (CA)n Simple_repeat Simple_repeat 1 31 0 3345 155 115 118 chr1 277423802 277424249 -4769415 + L1MC3 LINE L1 6668 7115 -670 243 212 15 15 chr1 277424249 277424315 -4769349 + MLT1F1 LTR MaLR 36 101 -466 3345 155 115 118 chr1 277424315 277424922 -4768742 + L1MC3 LINE L1 7115 7784 -1 181 280 60 0 chr1 277424991 277425041 -4768623 + MIR SINE MIR 11 63 -199 1192 147 15 0 chr1 277426005 277426209 -4767455 - L1PA16 LINE L1 -9 6157 5951 2254 99 13 10 chr1 277428926 277429230 -4764434 + AluSx SINE Alu 1 305 -7 331 199 44 73 chr1 277429232 277429368 -4764296 + L1ME4a LINE L1 5937 6068 -53 22 0 0 0 chr1 277429386 277429408 -4764256 + AT_rich Low_complexity Low_complexity 1 22 0 1160 191 5 0 chr1 277429711 277429931 -4763733 - L1 LINE L1 -1146 5000 4780 494 147 42 11 chr1 277430841 277430936 -4762728 - LTR9 LTR ERV1 -93 519 422 2484 168 30 5 chr1 277430936 277431377 -4762287 - HUERS-P3 LTR ERV1 -8453 466 15 992 130 34 45 chr1 277431392 277431515 -4762149 - LTR9 LTR ERV1 0 612 490 1959 154 6 3 chr1 277431515 277431826 -4761838 + AluSx SINE Alu 1 312 0 992 130 34 45 chr1 277431826 277431879 -4761785 - LTR9 LTR ERV1 -122 490 438 1990 128 21 3 chr1 277433053 277433341 -4760323 + AluJb SINE Alu 1 293 -19 2485 32 0 4 chr1 277433708 277433988 -4759676 - AluY SINE Alu -16 295 17 429 109 0 0 chr1 277434039 277434103 -4759561 + (GA)n Simple_repeat Simple_repeat 2 65 0 338 351 61 0 chr1 277434900 277435031 -4758633 - L2 LINE L2 0 3272 3134 3021 81 16 0 chr1 277435227 277435608 -4758056 + L1PA10 LINE L1 5778 6164 -4 457 250 15 38 chr1 277435628 277435760 -4757904 - L1M4b LINE L1 -5486 1373 1245 530 279 8 0 chr1 277436150 277436279 -4757385 + MER94 DNA DNA 5 134 0 766 224 67 74 chr1 277436558 277436998 -4756666 - MER39 LTR ERV1 -96 609 1 943 247 55 82 chr1 277437621 277437813 -4755851 - LTR37B LTR ERV1 0 468 272 1922 160 19 19 chr1 277437813 277438125 -4755539 + AluJb SINE Alu 1 312 0 943 247 55 82 chr1 277438125 277438405 -4755259 - LTR37B LTR ERV1 -196 272 9 2183 199 52 111 chr1 277438641 277438686 -4754978 - LTR8A LTR ERV1 0 727 681 6834 102 22 4 chr1 277438686 277439638 -4754026 - LTR5 LTR ERVK 0 969 1 2183 199 52 111 chr1 277439638 277440330 -4753334 - LTR8A LTR ERV1 -46 681 34 451 206 186 10 chr1 277440438 277440535 -4753129 - FLAM_C SINE Alu -18 125 12 1935 167 0 3 chr1 277440629 277440934 -4752730 + AluSx SINE Alu 1 304 -8 438 257 7 71 chr1 277441438 277441578 -4752086 - L2 LINE L2 -22 3291 3161 1794 121 18 154 chr1 277441776 277442166 -4751498 - MER1B DNA MER1_type 0 337 1 510 43 57 0 chr1 277443225 277443295 -4750369 + MER41A LTR ERV1 400 473 -81 396 287 66 15 chr1 277443336 277443472 -4750192 + L2 LINE L2 3168 3310 -3 302 354 63 40 chr1 277443480 277443703 -4749961 + L2 LINE L2 2447 2674 -640 1018 177 103 8 chr1 277443805 277444102 -4749562 - LTR54 LTR ERV1 -122 388 3 1285 244 64 31 chr1 277446365 277446873 -4746791 - L1MEc LINE L1 -4160 2380 1854 327 181 0 13 chr1 277446876 277446953 -4746711 - MLT1D LTR MaLR -7 498 389 1185 255 123 47 chr1 277447062 277447371 -4746293 - L1MEc LINE L1 -5194 1336 1052 324 0 0 0 chr1 277447371 277447407 -4746257 + (TG)n Simple_repeat Simple_repeat 2 37 0 1185 255 123 47 chr1 277447407 277447902 -4745762 - L1MEc LINE L1 -5478 1052 471 22 0 0 0 chr1 277447943 277447965 -4745699 + AT_rich Low_complexity Low_complexity 1 22 0 1309 121 116 5 chr1 277448140 277448347 -4745317 + MER30 DNA MER1_type 1 230 0 5375 187 30 8 chr1 277448494 277448583 -4745081 - Ricksha_b DNA DNA -1628 1226 1140 1822 168 0 0 chr1 277448583 277448875 -4744789 - AluJb SINE Alu -9 303 12 5375 187 30 8 chr1 277448875 277449909 -4743755 - Ricksha_b DNA DNA -1714 1140 183 792 237 16 53 chr1 277451102 277451347 -4742317 - Ricksha_b DNA DNA -1010 244 9 24 32 0 0 chr1 277451473 277451504 -4742160 + AT_rich Low_complexity Low_complexity 1 31 0 186 238 127 0 chr1 277453744 277453807 -4739857 + MIR SINE MIR 80 150 -112 181 274 151 27 chr1 277457734 277457807 -4735857 + L3b LINE CR1 1408 1489 -94 430 246 47 47 chr1 277459299 277459470 -4734194 + MIR SINE MIR 9 179 -83 2213 113 7 0 chr1 277459677 277459977 -4733687 - AluSx SINE Alu -10 302 1 410 297 64 51 chr1 277460041 277460337 -4733327 - L2 LINE L2 -444 2870 2571 197 263 158 102 chr1 277461326 277461592 -4732072 - L2 LINE L2 -704 2610 2330 222 250 39 0 chr1 277462810 277462862 -4730802 - L2 LINE L2 -18 3295 3242 460 329 104 41 chr1 277462871 277463285 -4730379 - MLT1J2 LTR MaLR -10 440 1 270 296 26 59 chr1 277463300 277463452 -4730212 - MIR SINE MIR -109 153 7 433 292 79 46 chr1 277463834 277464050 -4729614 + MIR SINE MIR 4 226 -36 330 270 61 26 chr1 277464085 277464200 -4729464 - L2 LINE L2 -11 3261 3143 7177 62 18 0 chr1 277464389 277465914 -4727750 - L1PA7 LINE L1 0 6154 4610 420 331 22 7 chr1 277467121 277467260 -4726404 - MIR SINE MIR -102 160 20 218 297 110 22 chr1 277467410 277467501 -4726163 - L2 LINE L2 -255 3017 2919 320 277 217 63 chr1 277468811 277469129 -4724535 + HAL1 LINE L1 155 521 -1986 1550 171 19 7 chr1 277469396 277469665 -4723999 + AluJo SINE Alu 20 291 -21 3385 164 33 11 chr1 277469784 277470394 -4723270 - L1MC1 LINE L1 -6 6327 5705 5940 164 68 49 chr1 277470395 277471488 -4722176 - L1MCa LINE L1 -4127 2299 1228 2419 164 34 7 chr1 277471488 277471903 -4721761 + MSTB LTR MaLR 1 426 0 5940 164 68 49 chr1 277471903 277472554 -4721110 - L1MCa LINE L1 -5198 1228 118 399 216 40 111 chr1 277472554 277472680 -4720984 - L1MA7 LINE L1 -1 6296 6170 767 154 8 0 chr1 277472683 277472800 -4720864 - L1MCa LINE L1 -6303 123 6 336 224 13 13 chr1 277473815 277473891 -4719773 + MIR SINE MIR 111 186 -76 327 302 43 9 chr1 277473925 277474041 -4719623 - L2 LINE L2 -1 3312 3193 1393 145 129 24 chr1 277475092 277475372 -4718292 - AluJb SINE Alu 0 307 1 27 29 0 0 chr1 277475724 277475758 -4717906 + AT_rich Low_complexity Low_complexity 1 34 0 1880 159 3 7 chr1 277475765 277476066 -4717598 + AluJb SINE Alu 1 300 -12 257 246 120 92 chr1 277476311 277476453 -4717211 - MIR3 SINE MIR -60 148 3 1696 167 0 50 chr1 277476582 277476680 -4716984 + AluSx SINE Alu 1 102 -210 311 0 26 0 chr1 277476680 277476719 -4716945 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1696 167 0 50 chr1 277476719 277476943 -4716721 + AluSx SINE Alu 102 307 -5 237 244 90 26 chr1 277476946 277477024 -4716640 - L3 LINE CR1 -79 1498 1416 530 333 68 55 chr1 277477080 277477389 -4716275 - L2 LINE L2 -26 3246 2934 235 270 0 16 chr1 277477662 277477725 -4715939 + MIR SINE MIR 102 163 -99 242 224 0 0 chr1 277479171 277479220 -4714444 + GA-rich Low_complexity Low_complexity 3 51 0 187 275 0 58 chr1 277479540 277479609 -4714055 - L2 LINE L2 0 3272 3208 926 153 0 0 chr1 277479626 277479757 -4713907 + FLAM_C SINE Alu 1 131 -2 294 218 28 113 chr1 277479897 277480039 -4713625 + L1ME3A LINE L1 5822 5951 -219 1205 128 51 0 chr1 277480056 277480251 -4713413 - Tigger7 DNA MER2_type -3 2584 2380 279 347 22 10 chr1 277480288 277480411 -4713253 - L2 LINE L2 -223 3049 2924 1973 71 82 14 chr1 277480466 277480748 -4712916 + AluY SINE Alu 1 301 -10 1477 173 7 41 chr1 277481159 277481454 -4712210 - AluJb SINE Alu -27 285 1 315 366 61 0 chr1 277481917 277482048 -4711616 + L2 LINE L2 3134 3272 0 429 109 0 0 chr1 277482845 277482909 -4710755 + (TC)n Simple_repeat Simple_repeat 2 65 0 2190 92 0 3 chr1 277482960 277483244 -4710420 + AluSg SINE Alu 17 299 -11 2235 53 0 0 chr1 277485080 277485342 -4708322 - AluY SINE Alu -15 296 35 1273 165 84 0 chr1 277486230 277486467 -4707197 - MER31A LTR ERV1 0 485 229 3219 217 42 98 chr1 277486503 277486777 -4706887 - L1M2 LINE L1 -5096 1753 1465 2094 125 3 3 chr1 277486777 277487072 -4706592 - AluSx SINE Alu -17 295 1 3219 217 42 98 chr1 277487072 277488440 -4705224 - L1M2 LINE L1 -5384 1465 1 950 139 125 37 chr1 277488440 277488656 -4705008 - MER31A LTR ERV1 -244 241 7 293 118 78 0 chr1 277488792 277488843 -4704821 + HsTC2 DNA Tc2 1805 1859 -39 231 235 74 0 chr1 277488901 277488982 -4704682 - MIR SINE MIR -8 254 168 246 286 0 0 chr1 277489817 277489866 -4703798 + L2 LINE L2 3246 3294 -19 955 210 99 71 chr1 277491457 277491806 -4701858 + MLT1A2 LTR MaLR 1 374 0 232 272 163 22 chr1 277491949 277492041 -4701623 + L2 LINE L2 3201 3305 -8 304 254 132 40 chr1 277492094 277492254 -4701410 - MER20B DNA MER1_type -17 202 25 851 153 0 0 chr1 277492372 277492509 -4701155 + L1MA4A LINE L1 6156 6292 -11 2324 107 0 3 chr1 277492758 277493066 -4700598 + AluSx SINE Alu 1 307 -5 215 200 0 0 chr1 277494303 277494343 -4699321 + L2 LINE L2 3220 3259 -13 4933 139 55 51 chr1 277495727 277496144 -4697520 - L1PA16 LINE L1 -9 6157 5743 210 71 0 0 chr1 277496144 277496172 -4697492 + (TA)n Simple_repeat Simple_repeat 1 28 0 4933 139 55 51 chr1 277496172 277497035 -4696629 - L1PA16 LINE L1 -423 5743 4873 220 312 101 40 chr1 277497058 277497257 -4696407 - L2 LINE L2 -657 2657 2447 2038 84 8 4 chr1 277497427 277497690 -4695974 - AluSx SINE Alu -48 264 1 2535 175 31 10 chr1 277497704 277498190 -4695474 - L1MD1 LINE L1 -148 6094 5599 424 309 7 46 chr1 277498206 277498392 -4695272 - MIR3 SINE MIR -63 145 2 2357 81 0 0 chr1 277499554 277499851 -4693813 - AluY SINE Alu -14 297 1 21 0 0 0 chr1 277499959 277499980 -4693684 + AT_rich Low_complexity Low_complexity 1 21 0 5680 162 57 64 chr1 277500602 277501606 -4692058 - L1MA5 LINE L1 0 6300 5290 2326 100 3 3 chr1 277501606 277501917 -4691747 - AluSx SINE Alu -1 311 1 5680 162 57 64 chr1 277501917 277503086 -4690578 - L1MA5 LINE L1 -1010 5290 4119 820 176 27 37 chr1 277503076 277503264 -4690400 - L1MA5 LINE L1 -2665 3481 3296 * 10019 154 30 4 chr1 277503264 277504926 -4688738 - Tigger1 DNA MER2_type -712 1706 2 1720 134 18 88 chr1 277505128 277505457 -4688207 - AluSx SINE Alu -6 306 1 333 0 0 0 chr1 277507303 277507340 -4686324 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 231 55 44 chr1 277507370 277507461 -4686203 - MIR SINE MIR -151 111 20 546 275 19 13 chr1 277508569 277508766 -4684898 - MIR SINE MIR 0 262 1 504 274 82 46 chr1 277510303 277510551 -4683113 + MIR SINE MIR 13 262 0 198 143 0 0 chr1 277511344 277511379 -4682285 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr1 277511417 277511438 -4682226 + AT_rich Low_complexity Low_complexity 1 21 0 935 217 20 15 chr1 277511807 277512010 -4681654 - MER20 DNA MER1_type -15 204 1 1648 179 14 10 chr1 277512245 277512541 -4681123 + AluJo SINE Alu 2 298 -14 1886 223 121 8 chr1 277512870 277513342 -4680322 + L1MC4 LINE L1 6536 7060 -982 1819 214 189 18 chr1 277513356 277513921 -4679743 + L1MC4 LINE L1 7241 7902 -140 261 128 21 0 chr1 277513932 277513979 -4679685 + L1MC4 LINE L1 7995 8042 0 255 133 0 67 chr1 277514034 277514079 -4679585 + L1MB3 LINE L1 5576 5617 -504 2416 103 0 0 chr1 277514535 277514847 -4678817 - AluSq SINE Alu -1 312 1 915 143 0 0 chr1 277514894 277515027 -4678637 - FLAM_A SINE Alu 0 133 1 2539 169 117 19 chr1 277515178 277515718 -4677946 + L1MB3 LINE L1 5587 6179 -4 1717 222 143 18 chr1 277515850 277516422 -4677242 - LTR48B LTR ERV1 0 644 1 2093 117 13 0 chr1 277516807 277517105 -4676559 - AluSg SINE Alu -8 302 1 2051 148 0 0 chr1 277517668 277517971 -4675693 + AluSx SINE Alu 1 303 -9 328 317 29 0 chr1 277519913 277520017 -4673647 + MIR3 SINE MIR 89 195 -13 2184 122 3 0 chr1 277521027 277521338 -4672326 - AluSx SINE Alu 0 312 1 1833 144 7 27 chr1 277522569 277522868 -4670796 - AluJb SINE Alu -19 293 1 323 275 158 8 chr1 277524891 277525011 -4668653 - MIR SINE MIR -91 171 34 1791 155 0 14 chr1 277525247 277525543 -4668121 + AluJb SINE Alu 1 292 -20 462 253 187 10 chr1 277526215 277526413 -4667251 - MIR SINE MIR -21 241 9 25 31 0 0 chr1 277526636 277526668 -4666996 + AT_rich Low_complexity Low_complexity 1 32 0 854 188 0 0 chr1 277527482 277527636 -4666028 + FRAM SINE Alu 1 154 -12 1468 75 0 0 chr1 277527644 277527831 -4665833 + AluY SINE Alu 1 187 -124 748 25 0 0 chr1 277527831 277527912 -4665752 + AluY SINE Alu 54 134 -177 2483 53 0 0 chr1 277527912 277528213 -4665451 + AluY SINE Alu 1 301 -10 256 297 11 11 chr1 277529990 277530081 -4663583 + CT-rich Low_complexity Low_complexity 2 92 0 287 288 158 7 chr1 277530314 277530453 -4663211 - MIR SINE MIR -9 253 94 200 321 0 0 chr1 277530451 277530504 -4663160 + L2 LINE L2 3215 3267 -5 * 201 323 0 15 chr1 277530515 277530580 -4663084 - MIR SINE MIR -129 79 16 750 279 5 5 chr1 277530827 277531032 -4662632 + MIR SINE MIR 38 241 -21 2956 214 55 3 chr1 277531187 277531877 -4661787 - L1MB4 LINE L1 0 6180 5455 291 347 0 0 chr1 277533750 277533845 -4659819 - L2 LINE L2 -7 3265 3171 685 62 0 0 chr1 277535247 277535328 -4658336 - AluSc SINE Alu -11 298 218 1457 98 0 0 chr1 277535329 277535513 -4658151 - AluSc SINE Alu -125 184 1 1445 161 42 0 chr1 277536427 277536687 -4656977 - L1MB3 LINE L1 0 6183 5913 633 90 0 0 chr1 277536689 277536778 -4656886 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 812 183 0 0 chr1 277536778 277536904 -4656760 - FLAM_A SINE Alu -7 126 1 774 326 16 0 chr1 277537013 277537255 -4656409 + MIR SINE MIR 8 253 -9 625 277 7 7 chr1 277537929 277538084 -4655580 + MLT1F LTR MaLR 1 155 -387 255 234 0 0 chr1 277538091 277538151 -4655513 + MLT1H LTR MaLR 96 191 -358 255 234 0 0 chr1 277538158 277538218 -4655446 + MLT1H LTR MaLR 96 191 -358 255 234 0 0 chr1 277538225 277538285 -4655379 + MLT1H LTR MaLR 96 191 -358 255 234 0 0 chr1 277538292 277538352 -4655312 + MLT1H LTR MaLR 96 191 -358 255 234 0 0 chr1 277538359 277538419 -4655245 + MLT1H LTR MaLR 96 191 -358 255 234 0 0 chr1 277538426 277538486 -4655178 + MLT1H LTR MaLR 96 191 -358 1149 261 82 23 chr1 277538502 277538892 -4654772 + MLT1F1 LTR MaLR 114 526 -41 247 182 0 18 chr1 277539070 277539125 -4654539 + L2 LINE L2 3219 3272 0 1250 175 13 9 chr1 277539418 277539647 -4654017 - MLT1D LTR MaLR -9 496 267 1851 133 3 68 chr1 277539902 277540226 -4653438 + AluJo SINE Alu 1 303 -9 22 35 0 0 chr1 277540366 277540395 -4653269 + AT_rich Low_complexity Low_complexity 1 29 0 203 305 59 96 chr1 277540875 277541114 -4652550 - L2 LINE L2 -98 3174 2945 316 270 74 65 chr1 277541267 277541606 -4652058 - MLT1K LTR MaLR -32 556 131 457 273 107 21 chr1 277541842 277542029 -4651635 - MIR SINE MIR -37 225 23 306 0 0 0 chr1 277542151 277542185 -4651479 + (TG)n Simple_repeat Simple_repeat 2 35 0 271 287 125 43 chr1 277542274 277542440 -4651224 + MER5A DNA MER1_type 17 178 0 181 267 147 0 chr1 277542456 277542531 -4651133 - L3b LINE CR1 -289 1294 1209 553 323 50 5 chr1 277542533 277542731 -4650933 + MIR SINE MIR 8 214 -48 382 320 99 20 chr1 277544797 277545100 -4648564 - L2 LINE L2 -861 2453 2127 25044 155 21 30 chr1 277545410 277549720 -4643944 - L1PA10 LINE L1 -2 6481 2137 2180 125 0 7 chr1 277549720 277550025 -4643639 + AluSx SINE Alu 1 303 -9 25044 155 21 30 chr1 277550025 277550943 -4642721 - L1PA10 LINE L1 -4346 2137 1286 252 59 0 0 chr1 277550943 277550977 -4642687 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 25044 155 21 30 chr1 277550977 277551575 -4642089 - L1PA10 LINE L1 -5197 1286 685 217 384 10 0 chr1 277551643 277551742 -4641922 - L2 LINE L2 -224 3048 2949 2101 112 3 13 chr1 277551896 277552199 -4641465 - AluSc SINE Alu -9 300 1 1641 103 13 8 chr1 277552373 277552607 -4641057 - AluSg/x SINE Alu -5 305 71 28 0 0 0 chr1 277554505 277554533 -4639131 + AT_rich Low_complexity Low_complexity 1 28 0 1314 138 142 18 chr1 277554705 277554930 -4638734 - AluJb SINE Alu -59 253 1 5140 150 59 21 chr1 277555377 277556514 -4637150 - L1MA7 LINE L1 -6 6285 5096 1705 159 10 17 chr1 277558683 277558978 -4634686 + AluJo SINE Alu 3 295 -17 312 326 106 53 chr1 277558981 277559208 -4634456 - L2 LINE L2 -19 3253 3015 1639 293 142 25 chr1 277559942 277560855 -4632809 + L2 LINE L2 2232 3257 -56 801 208 132 14 chr1 277562367 277562579 -4631085 + MIR SINE MIR 7 243 -19 2213 115 0 7 chr1 277562865 277563161 -4630503 - AluSx SINE Alu -18 294 1 2656 42 0 0 chr1 277564581 277564888 -4628776 - AluY SINE Alu -4 307 1 394 352 122 5 chr1 277565617 277565830 -4627834 - L2 LINE L2 -474 2840 2603 433 284 177 16 chr1 277567162 277567479 -4626185 - L2 LINE L2 -140 3173 2806 870 226 139 14 chr1 277567484 277567594 -4626070 - MER5C DNA MER1_type 0 324 229 1636 170 25 11 chr1 277567594 277567871 -4625793 + AluJb SINE Alu 1 281 -31 870 226 139 14 chr1 277567871 277568047 -4625617 - MER5C DNA MER1_type -95 229 2 * 1423 261 58 33 chr1 277568047 277568537 -4625127 - L2 LINE L2 -516 2798 2296 270 268 0 28 chr1 277568859 277568930 -4624734 + 7SK RNA RNA 2 70 -123 324 318 75 17 chr1 277568995 277569168 -4624496 + L1ME4a LINE L1 5875 6057 -64 283 252 49 57 chr1 277569786 277569806 -4623858 - L1MA10 LINE L1 -1 6333 6314 938 209 42 14 chr1 277569806 277570021 -4623643 - L1ME1 LINE L1 -5 6161 5941 3967 160 55 7 chr1 277570025 277570737 -4622927 - L1MA5 LINE L1 0 6300 5555 380 60 0 0 chr1 277570737 277570787 -4622877 - MADE1 DNA Mariner 0 80 31 335 143 0 0 chr1 277570793 277570849 -4622815 - L1MA5 LINE L1 -1689 4457 4402 359 83 0 0 chr1 277570860 277570908 -4622756 + MADE1 DNA Mariner 32 79 -1 6072 163 35 17 chr1 277570908 277571393 -4622271 - L1M2 LINE L1 -743 5403 4928 5720 22 0 3 chr1 277571393 277572016 -4621648 - L1PA5 LINE L1 0 6154 5534 6072 163 35 17 chr1 277572016 277572892 -4620772 - L1M2 LINE L1 -1218 4928 4154 5171 166 73 18 chr1 277572897 277574964 -4618700 - L1MA4 LINE L1 -6 6294 4132 1434 149 47 4 chr1 277575064 277575299 -4618365 - MER7A DNA MER2_type -102 244 2 1302 204 9 0 chr1 277578152 277578372 -4615292 + MER58A DNA MER1_type 3 224 0 473 243 171 61 chr1 277578524 277578804 -4614860 - LTR33 LTR ERVL -71 450 140 1637 247 76 7 chr1 277578863 277579308 -4614356 + L1MC4a LINE L1 5376 5851 -1957 2455 68 0 34 chr1 277579391 277579713 -4613951 + AluY SINE Alu 1 311 0 216 128 21 85 chr1 277582126 277582173 -4611491 - L2 LINE L2 -16 3256 3213 753 171 20 7 chr1 277582267 277582419 -4611245 - L1MD1 LINE L1 -2 6240 6087 46 0 0 0 chr1 277582419 277582465 -4611199 + AT_rich Low_complexity Low_complexity 1 46 0 181 329 79 33 chr1 277582819 277582971 -4610693 + L2 LINE L2 2947 3105 -167 7753 52 8 0 chr1 277585033 277586780 -4606884 + L1PA5 LINE L1 4390 6145 -9 220 100 60 0 chr1 277586780 277586830 -4606834 + (TA)n Simple_repeat Simple_repeat 2 54 0 227 288 77 45 chr1 277586877 277587409 -4606255 + L1ME LINE L1 4201 4749 -1397 1863 163 7 10 chr1 277587709 277588009 -4605655 + AluJb SINE Alu 3 301 -11 404 282 174 45 chr1 277588136 277588505 -4605159 + L1ME LINE L1 5192 5615 -743 232 294 73 7 chr1 277588559 277588695 -4604969 + L1ME LINE L1 5671 5815 -306 577 282 40 20 chr1 277588729 277588931 -4604733 + MIR SINE MIR 3 208 -54 2325 48 0 31 chr1 277589438 277589756 -4603908 - AluY SINE Alu 0 309 1 1760 173 33 16 chr1 277591265 277591572 -4602092 - AluJb SINE Alu 0 312 1 284 270 60 50 chr1 277592840 277592940 -4600724 + MIR SINE MIR 12 112 -150 1289 159 9 44 chr1 277593106 277593333 -4600331 + AluJo SINE Alu 1 219 -93 2430 223 80 16 chr1 277593361 277593821 -4599843 + L1MD3 LINE L1 4500 4929 -1237 650 237 8 0 chr1 277593821 277593952 -4599712 + FLAM_A SINE Alu 1 132 -1 2430 223 80 16 chr1 277593952 277594890 -4598774 + L1MD3 LINE L1 4929 5701 -465 4032 182 9 41 chr1 277594900 277595045 -4598619 + L1MB3 LINE L1 5352 5500 -683 2459 68 0 3 chr1 277595045 277595352 -4598312 + AluY SINE Alu 1 306 -5 4032 182 9 41 chr1 277595352 277595464 -4598200 + L1MB3 LINE L1 5500 5614 -569 608 211 15 45 chr1 277595464 277595597 -4598067 + FLAM_A SINE Alu 1 129 -4 4032 182 9 41 chr1 277595597 277596351 -4597313 + L1MB3 LINE L1 5614 6175 -8 227 284 57 45 chr1 277596575 277596663 -4597001 - MIR SINE MIR -68 140 52 703 97 15 5 chr1 277596806 277596933 -4596731 + L1MA5 LINE L1 6166 6300 0 537 220 129 108 chr1 277597041 277597169 -4596495 + MIR SINE MIR 9 146 -116 504 244 43 0 chr1 277597169 277597284 -4596380 + FLAM_A SINE Alu 2 121 -12 537 220 129 108 chr1 277597284 277597396 -4596268 + MIR SINE MIR 146 254 -8 180 111 0 0 chr1 277597529 277597556 -4596108 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 4783 145 39 6 chr1 277597623 277598485 -4595179 + L1MC1 LINE L1 5362 6252 -81 273 258 148 58 chr1 277598631 277598786 -4594878 + MIR SINE MIR 16 184 -78 800 236 53 5 chr1 277599527 277599735 -4593929 + MER58A DNA MER1_type 6 223 -1 238 303 91 20 chr1 277599760 277599859 -4593805 + L2 LINE L2 3189 3294 -19 1579 197 32 4 chr1 277600835 277601114 -4592550 - AluJo SINE Alu -25 287 1 304 325 100 0 chr1 277602662 277602782 -4590882 + L2 LINE L2 3136 3267 -5 543 274 72 0 chr1 277603771 277603924 -4589740 + MIR3 SINE MIR 13 176 -32 1993 164 222 37 chr1 277603935 277604453 -4589211 - LTR18B LTR ERVL 0 614 1 2164 95 0 7 chr1 277606503 277606835 -4586829 + AluSg SINE Alu 1 330 0 280 321 57 57 chr1 277607231 277607390 -4586274 + L2 LINE L2 3095 3253 -19 1989 250 72 39 chr1 277607767 277607954 -4585710 + L1MEc LINE L1 37 216 -6180 1674 193 44 16 chr1 277607954 277608234 -4585430 + MER83C LTR ERV1 1 295 -78 2106 110 0 3 chr1 277608234 277608533 -4585131 - AluSc SINE Alu -11 298 1 1674 193 44 16 chr1 277608533 277608615 -4585049 + MER83C LTR ERV1 295 373 0 1989 250 72 39 chr1 277608615 277609179 -4584485 + L1MEc LINE L1 216 813 -5583 2317 107 0 3 chr1 277609460 277609768 -4583896 + AluSq SINE Alu 1 307 -6 423 0 0 0 chr1 277609805 277609852 -4583812 + (CA)n Simple_repeat Simple_repeat 2 48 0 775 53 0 0 chr1 277611292 277611387 -4582277 - L1PA10 LINE L1 -10 6158 6064 412 239 82 121 chr1 277612354 277612613 -4581051 + MLT1J LTR MaLR 170 413 -98 1583 174 80 7 chr1 277612613 277612901 -4580763 - AluJo SINE Alu -3 309 1 412 239 82 121 chr1 277612901 277612997 -4580667 + MLT1J LTR MaLR 413 511 0 2215 141 0 0 chr1 277613004 277613316 -4580348 - AluSx SINE Alu 0 312 1 1513 194 46 41 chr1 277613447 277613892 -4579772 - MER39 LTR ERV1 0 707 67 284 329 43 86 chr1 277613958 277614259 -4579405 + L2 LINE L2 2949 3236 -36 371 308 41 47 chr1 277614364 277614536 -4579128 + L2 LINE L2 3087 3257 -15 189 0 0 0 chr1 277615036 277615057 -4578607 + (A)n Simple_repeat Simple_repeat 1 21 0 1647 159 3 37 chr1 277615731 277616026 -4577638 + AluJo SINE Alu 1 285 -27 2091 94 0 14 chr1 277616889 277617176 -4576488 + AluSc SINE Alu 1 283 -26 423 0 0 0 chr1 277617176 277617223 -4576441 + (CA)n Simple_repeat Simple_repeat 2 48 0 484 227 45 0 chr1 277617801 277617911 -4575753 + MIR3 SINE MIR 48 162 -46 222 37 0 0 chr1 277617947 277617974 -4575690 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1936 30 51 13 chr1 277618455 277618691 -4574973 + AluY SINE Alu 54 298 -13 26 50 0 0 chr1 277619127 277619167 -4574497 + AT_rich Low_complexity Low_complexity 1 40 0 1217 245 163 16 chr1 277619805 277620254 -4573410 + MER20B DNA MER1_type 1 515 -268 549 277 88 8 chr1 277620373 277620622 -4573042 + MER20B DNA MER1_type 515 783 0 2105 124 0 0 chr1 277621216 277621528 -4572136 + AluSx SINE Alu 1 312 0 635 306 49 49 chr1 277621739 277622046 -4571618 + L2 LINE L2 3006 3312 -1 763 297 22 22 chr1 277622059 277622288 -4571376 - MIR SINE MIR -12 250 22 1703 157 28 11 chr1 277622396 277622683 -4570981 - AluJb SINE Alu -3 309 18 442 141 20 71 chr1 277622755 277622854 -4570810 + L1MC1 LINE L1 6240 6333 0 383 366 32 11 chr1 277624337 277624523 -4569141 + L2 LINE L2 2599 2788 -526 211 401 75 37 chr1 277624657 277624951 -4568713 + L2 LINE L2 2968 3272 0 877 334 113 26 chr1 277625337 277625912 -4567752 + L3 LINE CR1 230 854 -723 1989 199 27 15 chr1 277625952 277626761 -4566903 + L1M3 LINE L1 4841 5663 -520 288 0 0 0 chr1 277626773 277626810 -4566854 + L1M LINE L1 5255 5291 -951 22 0 0 0 chr1 277627468 277627490 -4566174 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1 277628027 277628066 -4565598 + AT_rich Low_complexity Low_complexity 1 39 0 263 187 27 53 chr1 277629240 277629315 -4564349 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 222 248 152 38 chr1 277629404 277629509 -4564155 - L3b LINE CR1 -21 1562 1446 263 252 0 9 chr1 277630262 277630369 -4563295 + (TGAA)n Simple_repeat Simple_repeat 3 108 0 223 306 16 0 chr1 277630451 277630513 -4563151 - MER91 DNA MER1_type -76 64 2 490 267 15 0 chr1 277630821 277630956 -4562708 - L1MB7 LINE L1 -76 6108 5972 2391 68 0 0 chr1 277632088 277632383 -4561281 - AluY SINE Alu -16 295 1 23 33 0 0 chr1 277632383 277632413 -4561251 + AT_rich Low_complexity Low_complexity 1 30 0 311 292 119 36 chr1 277633871 277634090 -4559574 + MIR SINE MIR 26 262 0 1494 192 63 3 chr1 277634266 277634553 -4559111 - AluJo SINE Alu -8 304 1 186 273 41 99 chr1 277634793 277634914 -4558750 - MIR SINE MIR -147 115 2 184 327 0 0 chr1 277635224 277635276 -4558388 - MIR SINE MIR -10 252 201 2806 189 59 13 chr1 277635760 277636432 -4557232 - Tigger7 DNA MER2_type 0 2587 1 354 23 0 0 chr1 277636785 277636828 -4556836 + (CA)n Simple_repeat Simple_repeat 2 44 0 1503 187 40 4 chr1 277637054 277637327 -4556337 + AluJb SINE Alu 1 283 -29 198 0 0 0 chr1 277637327 277637349 -4556315 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 840 195 19 0 chr1 277638672 277638826 -4554838 - FAM SINE Alu -6 43 1 306 328 43 0 chr1 277638865 277638981 -4554683 + MIR SINE MIR 84 204 -58 583 303 45 41 chr1 277639243 277639487 -4554177 + MIR SINE MIR 18 262 0 259 314 119 17 chr1 277639517 277639635 -4554029 - MIR SINE MIR -125 137 8 231 317 49 12 chr1 277639710 277639792 -4553872 - L2 LINE L2 -51 3221 3137 6092 125 149 25 chr1 277641120 277642257 -4551407 + MER52C LTR ERV1 1 1278 0 186 244 49 0 chr1 277642333 277642374 -4551290 - L2 LINE L2 -30 3242 3200 333 287 20 0 chr1 277642676 277642777 -4550887 - L2 LINE L2 -1501 1813 1711 418 321 58 16 chr1 277642830 277643020 -4550644 - MIR3 SINE MIR -9 199 2 2335 101 0 0 chr1 277644624 277644921 -4548743 + AluSg SINE Alu 1 297 -13 400 296 121 63 chr1 277645048 277645271 -4548393 + MIR SINE MIR 20 255 -7 396 157 191 95 chr1 277646451 277646598 -4547066 + MIR SINE MIR 102 262 0 1797 98 4 0 chr1 277647083 277647317 -4546347 - AluY SINE Alu -76 235 1 1962 126 7 33 chr1 277647935 277648237 -4545427 + AluSx SINE Alu 2 295 -17 585 281 82 79 chr1 277648777 277649094 -4544570 - L2 LINE L2 -5 3267 2950 230 354 73 6 chr1 277649091 277649255 -4544409 - L2 LINE L2 -786 2528 2354 * 237 262 252 0 chr1 277649496 277649603 -4544061 - MIR SINE MIR -114 148 15 204 179 77 0 chr1 277650844 277650883 -4542781 + MIR SINE MIR 204 245 -17 652 330 84 28 chr1 277651053 277651411 -4542253 - L2 LINE L2 -4 3309 2932 237 270 146 15 chr1 277651491 277651628 -4542036 - MLT1J LTR MaLR -133 378 224 691 204 0 0 chr1 277652089 277652202 -4541462 - FLAM_A SINE Alu -19 114 2 327 345 27 14 chr1 277652205 277652353 -4541311 - MIR SINE MIR -111 151 2 232 345 10 72 chr1 277653600 277653809 -4539855 + L2 LINE L2 2934 3129 -143 1917 73 12 8 chr1 277656413 277656697 -4536967 + AluSx SINE Alu 39 323 0 352 299 0 21 chr1 277656907 277657004 -4536660 - L2 LINE L2 -40 3273 3179 431 310 178 12 chr1 277657260 277657586 -4536078 - L2 LINE L2 -1236 2078 1699 2013 112 54 0 chr1 277658946 277659241 -4534423 + AluSq SINE Alu 1 311 -2 191 308 110 22 chr1 277659350 277659441 -4534223 - L2 LINE L2 -4 3268 3170 1812 172 48 21 chr1 277659486 277659859 -4533805 - MLT1B LTR MaLR -7 383 1 519 268 128 26 chr1 277660032 277660297 -4533367 - MER102b DNA MER1_type -1 340 49 401 307 114 0 chr1 277660474 277660588 -4533076 + L2 LINE L2 3142 3268 -4 2195 103 3 0 chr1 277661640 277661932 -4531732 + AluSg SINE Alu 1 293 -17 313 253 138 0 chr1 277661955 277662042 -4531622 + MIR SINE MIR 59 157 -105 21 36 0 0 chr1 277662927 277662955 -4530709 + AT_rich Low_complexity Low_complexity 1 28 0 5073 209 51 19 chr1 277714657 277715870 -4477794 - L1 LINE L1 -2603 4962 3687 2253 103 0 0 chr1 277715870 277716160 -4477504 - AluSc SINE Alu -19 290 1 5073 209 51 19 chr1 277716160 277716600 -4477064 - L1 LINE L1 -3878 3687 3262 225 125 0 0 chr1 277716592 277716632 -4477032 - L1 LINE L1 -4653 2913 2874 * 24 41 0 20 chr1 277716632 277716655 -4477009 + AT_rich Low_complexity Low_complexity 1 23 -25 2663 126 10 3 chr1 277716655 277717045 -4476619 - L1MA1 LINE L1 -8 6294 5902 24 41 0 20 chr1 277717045 277717070 -4476594 + AT_rich Low_complexity Low_complexity 23 48 0 4873 123 18 9 chr1 277717077 277718226 -4475438 - L1MA1 LINE L1 -359 5943 4780 7054 195 37 7 chr1 277718227 277719579 -4474085 - L1 LINE L1 -5887 1678 286 1663 169 68 15 chr1 277719579 277719904 -4473760 - THE1C LTR MaLR 0 375 34 253 35 0 0 chr1 277719922 277719951 -4473713 + THE1-int LTR MaLR 1219 1247 -333 * 2155 141 15 3 chr1 277719949 277720283 -4473381 + THE1-int LTR MaLR 458 795 -785 349 96 0 39 chr1 277720283 277720335 -4473329 - THE1C LTR MaLR -314 50 1 1092 238 22 7 chr1 277720335 277720604 -4473060 - L1 LINE L1 -7275 290 18 3519 232 61 25 chr1 277720604 277722408 -4471256 - L1M2 LINE L1 -4678 2531 1 429 316 57 55 chr1 277723350 277723755 -4469909 - MLT1J LTR MaLR -8 503 60 1713 215 76 48 chr1 277723893 277724391 -4469273 - MLT2B1 LTR ERVL -6 514 3 418 307 33 7 chr1 277724443 277724596 -4469068 + MIR3 SINE MIR 49 205 -3 271 105 0 0 chr1 277725843 277725881 -4467783 - U2 snRNA snRNA -150 38 1 2010 117 10 17 chr1 277726105 277726403 -4467261 - AluSx SINE Alu -16 296 1 326 276 122 19 chr1 277726602 277726758 -4466906 - HAL1 LINE L1 -5 2502 2331 213 193 53 35 chr1 277728016 277728073 -4465591 - L3b LINE CR1 -228 1355 1298 693 110 0 0 chr1 277729416 277729516 -4464148 - LTR12 LTR ERV1 0 714 615 331 193 11 11 chr1 277729518 277729606 -4464058 - LTR30 LTR ERV1 -79 643 556 1583 85 3 192 chr1 277729608 277729962 -4463702 - LTR12 LTR ERV1 -427 287 1 234 305 48 19 chr1 277729964 277730069 -4463595 - MIR SINE MIR -38 224 117 2867 231 72 27 chr1 277730155 277731356 -4462308 - L1ME1 LINE L1 -8 6158 4904 292 288 165 55 chr1 277731486 277731722 -4461942 + MIR SINE MIR 1 262 0 180 286 79 16 chr1 277731750 277731813 -4461851 + MER5A DNA MER1_type 46 112 -77 1648 167 47 13 chr1 277731956 277732255 -4461409 - AluJo SINE Alu -3 309 1 6396 133 22 10 chr1 277732635 277734335 -4459329 - L1MA3 LINE L1 0 6305 4583 232 280 0 0 chr1 277736116 277736166 -4457498 + polypyrimidine Low_complexity Low_complexity 3 52 0 4161 88 15 2 chr1 277736460 277737007 -4456657 - MER41A LTR ERV1 0 554 1 2760 166 27 76 chr1 277738443 277738679 -4454985 + LTR9 LTR ERV1 1 247 -365 5338 58 23 25 chr1 277738679 277739368 -4454296 - LTR12 LTR ERV1 0 688 1 2760 166 27 76 chr1 277739368 277739762 -4453902 + LTR9 LTR ERV1 247 600 -12 292 325 18 9 chr1 277741856 277741970 -4451694 + L2 LINE L2 2591 2705 -609 405 355 92 6 chr1 277742091 277742437 -4451227 + L2 LINE L2 2901 3276 -37 436 346 85 20 chr1 277742971 277743266 -4450398 - L3 LINE CR1 -13 1564 1251 371 310 103 25 chr1 277743275 277743517 -4450147 + MIR SINE MIR 2 262 0 321 332 88 34 chr1 277743592 277743830 -4449834 - L3 LINE CR1 -989 588 338 309 253 23 0 chr1 277744650 277744737 -4448927 - MIR SINE MIR -17 245 157 283 348 65 27 chr1 277746080 277746560 -4447104 + L2 LINE L2 2181 2678 -636 514 245 45 19 chr1 277747595 277747750 -4445914 - MER5B DNA MER1_type -3 175 17 198 246 14 14 chr1 277750115 277750184 -4443480 - MIR SINE MIR -112 96 28 184 288 14 14 chr1 277751984 277752057 -4441607 - L2 LINE L2 -266 3006 2934 224 298 38 69 chr1 277752281 277752412 -4441252 - MIR SINE MIR -124 138 12 274 261 39 62 chr1 277754577 277754707 -4438957 - MIR3 SINE MIR -47 161 35 344 263 76 41 chr1 277755714 277755885 -4437779 + MIR SINE MIR 20 196 -66 258 331 21 41 chr1 277755931 277756076 -4437588 - L2 LINE L2 -4 3268 3127 640 254 170 46 chr1 277756089 277756315 -4437349 + L2 LINE L2 2871 3068 -245 255 31 0 0 chr1 277756315 277756347 -4437317 + (TG)n Simple_repeat Simple_repeat 1 32 0 640 254 170 46 chr1 277756347 277756514 -4437150 + L2 LINE L2 3068 3313 0 935 212 21 5 chr1 277756602 277756791 -4436873 - MLT1D LTR MaLR -8 497 306 895 163 4 106 chr1 277756814 277757041 -4436623 - MLT1D LTR MaLR -301 204 1 2227 126 0 0 chr1 277757264 277757566 -4436098 - AluSx SINE Alu -10 302 1 918 164 48 26 chr1 277758163 277758352 -4435312 + MER3 DNA MER1_type 1 193 -16 247 283 117 25 chr1 277758439 277758559 -4435105 + MIR SINE MIR 20 150 -112 483 248 16 8 chr1 277758640 277758765 -4434899 - MER97b DNA MER1_type? -924 129 4 362 253 0 0 chr1 277758923 277759002 -4434662 - L2 LINE L2 -2 3270 3192 3853 164 49 66 chr1 277759215 277760110 -4433554 - L1MB8 LINE L1 0 6178 5299 455 348 140 38 chr1 277761290 277762034 -4431630 + L3 LINE CR1 516 1335 -242 289 320 47 0 chr1 277762258 277762386 -4431278 - L2 LINE L2 -212 3060 2927 21 57 0 0 chr1 277768494 277768529 -4425135 + AT_rich Low_complexity Low_complexity 1 35 0 377 257 59 22 chr1 277769443 277769579 -4424085 - L1MC4a LINE L1 -1911 5897 5757 210 222 16 32 chr1 277771310 277771373 -4422291 + GA-rich Low_complexity Low_complexity 1 62 0 186 226 0 94 chr1 277772715 277772768 -4420896 - L2 LINE L2 -69 3244 3197 1643 168 9 44 chr1 277773291 277773606 -4420058 - AluJb SINE Alu -8 304 1 1865 163 0 0 chr1 277774063 277774386 -4419278 + AluJb SINE Alu 1 323 0 1511 171 38 20 chr1 277775304 277775596 -4418068 + AluJo SINE Alu 1 297 -15 1569 140 10 78 chr1 277775605 277775912 -4417752 + AluJb SINE Alu 11 296 -16 432 311 98 50 chr1 277778621 277778959 -4414705 + L3 LINE CR1 408 761 -816 395 286 86 89 chr1 277779268 277779604 -4414060 + MLT1K LTR MaLR 247 581 -7 282 222 97 0 chr1 277779627 277779699 -4413965 + L3 LINE CR1 946 1024 -553 648 283 80 50 chr1 277779743 277780167 -4413497 + L3 LINE CR1 1137 1573 -4 374 609 0 0 chr1 277780436 277780615 -4413049 + (CA)n Simple_repeat Simple_repeat 2 180 0 679 249 37 73 chr1 277780668 277780941 -4412723 + MER102a DNA MER1_type 68 330 0 22 35 0 0 chr1 277781110 277781139 -4412525 + AT_rich Low_complexity Low_complexity 1 29 0 1664 190 3 10 chr1 277781145 277781450 -4412214 + AluJo SINE Alu 1 303 -9 1402 168 47 91 chr1 277781949 277782312 -4411352 - MER7A DNA MER2_type -1 345 1 22 88 0 0 chr1 277782484 277782541 -4411123 + AT_rich Low_complexity Low_complexity 1 57 0 424 233 9 9 chr1 277783177 277783293 -4410371 + MER103 DNA DNA 36 151 -15 225 267 116 41 chr1 277783687 277783859 -4409805 - HAL1 LINE L1 -83 2424 2240 862 286 122 30 chr1 277783874 277784580 -4409084 - HAL1 LINE L1 -911 1596 826 759 210 26 52 chr1 277784577 277784806 -4408858 - L1MB8 LINE L1 -1 6177 5955 * 2361 78 7 7 chr1 277784834 277785143 -4408521 + AluY SINE Alu 1 309 -2 488 293 55 6 chr1 277785588 277785752 -4407912 + MER69A DNA AcHobo 1 172 -5 281 236 22 11 chr1 277785773 277785862 -4407802 - MIR SINE MIR -109 153 64 309 135 0 0 chr1 277787013 277787065 -4406599 + (TTC)n Simple_repeat Simple_repeat 2 53 0 1111 99 26 0 chr1 277787075 277787226 -4406438 - AluSq SINE Alu -127 186 32 452 275 90 17 chr1 277788779 277788885 -4404779 - MIR SINE MIR -65 197 71 2454 90 0 0 chr1 277788885 277789185 -4404479 + AluSc SINE Alu 1 300 -9 452 275 90 17 chr1 277789185 277789256 -4404408 - MIR SINE MIR -191 71 7 293 203 203 0 chr1 277790239 277790308 -4403356 + MER103 DNA DNA 4 86 -80 2292 215 81 2 chr1 277790661 277791195 -4402469 + L1MD3 LINE L1 7420 7995 0 789 298 57 42 chr1 277791247 277791633 -4402031 + HsTC2 DNA Tc2 500 891 -1007 2403 121 29 0 chr1 277793766 277794114 -4399550 + THE1B LTR MaLR 1 358 -6 3492 184 48 14 chr1 277794170 277794900 -4398764 - L1MB8 LINE L1 -11 6167 5413 410 320 8 0 chr1 277794923 277795045 -4398619 + L2 LINE L2 3191 3313 0 482 160 43 0 chr1 277795078 277795172 -4398492 - Charlie1 DNA MER1_type -483 2278 2181 2229 103 10 3 chr1 277795300 277795602 -4398062 + AluSx SINE Alu 1 304 -8 389 171 0 0 chr1 277795687 277795763 -4397901 + L1MA6 LINE L1 6225 6300 0 502 263 95 21 chr1 277796382 277796572 -4397092 + MIR3 SINE MIR 1 204 -4 189 311 45 23 chr1 277796859 277796991 -4396673 + MIR3 SINE MIR 3 137 -71 264 301 21 56 chr1 277797023 277797166 -4396498 + MIR SINE MIR 2 139 -123 2010 148 18 42 chr1 277797300 277797684 -4395980 + THE1C LTR MaLR 1 375 0 327 240 118 50 chr1 277797744 277797788 -4395876 + L1MC1 LINE L1 5769 5809 -524 912 102 0 36 chr1 277797788 277797925 -4395739 + FLAM_C SINE Alu 1 132 -1 327 240 118 50 chr1 277797925 277798101 -4395563 + L1MC1 LINE L1 5809 6004 -329 * 1713 132 63 3 chr1 277797926 277798213 -4395451 + L1MB2 LINE L1 5815 6118 -53 23 33 0 0 chr1 277798247 277798277 -4395387 + AT_rich Low_complexity Low_complexity 1 30 0 404 275 98 18 chr1 277798400 277798588 -4395076 + MIR SINE MIR 46 248 -14 258 348 17 25 chr1 277799057 277799175 -4394489 + L3b LINE CR1 1372 1488 -95 2321 93 0 22 chr1 277799249 277799421 -4394243 - AluSx SINE Alu -7 305 142 2443 97 0 0 chr1 277799421 277799729 -4393935 - AluSp SINE Alu -5 308 1 2321 93 0 22 chr1 277799729 277799868 -4393796 - AluSx SINE Alu -170 142 1 43589 34 22 1 chr1 277801742 277807763 -4385901 - L1PA3 LINE L1 0 6155 5 198 0 0 0 chr1 277807763 277807785 -4385879 + (T)n Simple_repeat Simple_repeat 1 22 0 196 256 23 0 chr1 277808740 277808783 -4384881 - MER5A DNA MER1_type -2 187 144 549 147 0 0 chr1 277809399 277809494 -4384170 + (TG)n Simple_repeat Simple_repeat 1 95 0 215 36 18 89 chr1 277809823 277809879 -4383785 + (TTTTTA)n Simple_repeat Simple_repeat 3 54 0 43 35 0 0 chr1 277810232 277810289 -4383375 + AT_rich Low_complexity Low_complexity 1 57 0 396 0 0 0 chr1 277810398 277810442 -4383222 + (TA)n Simple_repeat Simple_repeat 1 44 0 2476 84 0 0 chr1 277810990 277811300 -4382364 + AluSg SINE Alu 1 310 0 204 267 0 0 chr1 277811556 277811601 -4382063 + CT-rich Low_complexity Low_complexity 2 46 0 220 248 54 108 chr1 277812034 277812163 -4381501 - MIR3 SINE MIR -3 205 84 385 301 83 48 chr1 277812349 277812578 -4381086 + MIR SINE MIR 23 259 -3 2175 119 20 0 chr1 277815248 277815550 -4378114 + AluSg SINE Alu 1 308 -2 195 69 0 0 chr1 277816461 277816490 -4377174 + (T)n Simple_repeat Simple_repeat 1 29 0 207 280 0 0 chr1 277816909 277816959 -4376705 + CT-rich Low_complexity Low_complexity 3 52 0 2912 16 0 0 chr1 277817358 277817674 -4375990 - AluYb8 SINE Alu -2 316 1 467 348 78 8 chr1 277817765 277818009 -4375655 + MIR SINE MIR 2 262 0 249 270 0 0 chr1 277818197 277818260 -4375404 + L2 LINE L2 3185 3247 -25 1123 175 17 132 chr1 277819367 277819716 -4373948 - MLT1A1 LTR MaLR -12 353 45 313 125 5 5 chr1 277819715 277819788 -4373876 - Alu SINE Alu 0 300 251 * 232 257 0 14 chr1 277819968 277820038 -4373626 - MIR SINE MIR -112 96 28 611 184 53 40 chr1 277820681 277820697 -4372967 - MLT1K LTR MaLR -62 526 512 2304 93 3 3 chr1 277820697 277820997 -4372667 + AluSg SINE Alu 1 300 -10 611 184 53 40 chr1 277820997 277821132 -4372532 - MLT1K LTR MaLR -76 512 373 298 206 16 0 chr1 277821425 277821488 -4372176 + MER116 DNA Mariner 6 69 -11 203 296 0 0 chr1 277821976 277822030 -4371634 - MIR3 SINE MIR -13 195 142 326 229 76 38 chr1 277822606 277822737 -4370927 - L3 LINE CR1 -622 955 820 23 33 0 0 chr1 277822751 277822781 -4370883 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 277823069 277823089 -4370575 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 293 353 33 0 chr1 277823241 277823363 -4370301 - MIR SINE MIR -53 209 84 318 200 0 53 chr1 277823371 277823446 -4370218 - L3 LINE CR1 -855 722 652 211 211 0 0 chr1 277824416 277824454 -4369210 - L2 LINE L2 -15 3257 3220 406 129 24 0 chr1 277826432 277826517 -4367147 + (TG)n Simple_repeat Simple_repeat 1 87 0 341 93 19 0 chr1 277826618 277826672 -4366992 + (TG)n Simple_repeat Simple_repeat 2 56 0 243 0 0 0 chr1 277827200 277827227 -4366437 + (T)n Simple_repeat Simple_repeat 1 27 0 210 71 0 0 chr1 277827328 277827356 -4366308 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 3998 48 20 4 chr1 277827381 277827880 -4365784 - L1PA5 LINE L1 -13 6141 5635 24 32 0 0 chr1 277828762 277828793 -4364871 + AT_rich Low_complexity Low_complexity 1 31 0 193 304 104 9 chr1 277829052 277829167 -4364497 - L2 LINE L2 -182 3131 3006 247 249 131 63 chr1 277830283 277830504 -4363160 + L1MEd LINE L1 1414 1649 -4881 294 248 56 24 chr1 277830649 277830810 -4362854 + L1MEd LINE L1 1843 1942 -4598 263 301 16 24 chr1 277831096 277831219 -4362445 + L1MEd LINE L1 2661 2782 -3758 2358 74 27 0 chr1 277831720 277832019 -4361645 - AluY SINE Alu -4 307 1 437 235 56 82 chr1 277832696 277832892 -4360772 + MIR SINE MIR 62 252 -10 264 59 0 0 chr1 277832901 277832935 -4360729 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 297 0 0 0 chr1 277833062 277833095 -4360569 + (CA)n Simple_repeat Simple_repeat 2 34 0 358 299 130 47 chr1 277834835 277835089 -4358575 + L2 LINE L2 2981 3255 -17 228 111 0 0 chr1 277835102 277835138 -4358526 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 353 238 74 49 chr1 277836428 277836550 -4357114 + MIR3 SINE MIR 76 200 -8 262 262 123 49 chr1 277838514 277838636 -4355028 + MIR3 SINE MIR 3 133 -75 23 0 0 0 chr1 277838951 277838974 -4354690 + AT_rich Low_complexity Low_complexity 1 23 0 1743 165 7 21 chr1 277839046 277839331 -4354333 + AluJo SINE Alu 1 281 -31 372 153 0 0 chr1 277839336 277839421 -4354243 + CT-rich Low_complexity Low_complexity 2 86 0 340 270 50 0 chr1 277839769 277839869 -4353795 + MLT1G LTR MaLR 1 105 -490 440 105 0 0 chr1 277839870 277839927 -4353737 + Alu SINE Alu 2 58 -260 233 277 40 0 chr1 277840264 277840412 -4353252 + A-rich Low_complexity Low_complexity 3 156 0 1512 140 4 9 chr1 277840480 277840709 -4352955 + AluSq SINE Alu 79 306 -7 1580 261 38 41 chr1 277840713 277841245 -4352419 + MLT1G LTR MaLR 61 590 0 1956 253 46 23 chr1 277841395 277842095 -4351569 - L1M4 LINE L1 -1380 4766 4051 31 68 0 0 chr1 277842787 277842846 -4350818 + AT_rich Low_complexity Low_complexity 1 59 0 1763 153 43 0 chr1 277843574 277843855 -4349809 - AluSx SINE Alu -19 293 1 596 222 146 0 chr1 277844137 277844281 -4349383 + MIR SINE MIR 12 176 -86 2073 230 50 12 chr1 277844295 277844855 -4348809 - L1ME1 LINE L1 -5 6659 6079 * 4656 187 18 20 chr1 277844851 277845859 -4347805 - L1MB7 LINE L1 -19 6165 5300 1393 207 56 31 chr1 277846104 277846360 -4347304 - L1ME1 LINE L1 -731 5951 5678 2131 133 0 13 chr1 277846360 277846676 -4346988 - AluSx SINE Alu 0 312 1 1393 207 56 31 chr1 277846676 277846879 -4346785 - L1ME1 LINE L1 -1004 5678 5482 1113 131 23 0 chr1 277846942 277847118 -4346546 + L1M4 LINE L1 5331 5510 -674 1148 260 54 15 chr1 277847118 277847507 -4346157 - L1ME1 LINE L1 -1238 5406 5003 359 250 42 0 chr1 277847476 277847572 -4346092 - L1ME1 LINE L1 -4727 1919 1820 * 332 295 45 55 chr1 277848044 277848290 -4345374 - L1ME1 LINE L1 -5921 713 46 1026 252 47 0 chr1 277848533 277848747 -4344917 - MER58A DNA MER1_type 0 224 1 21 0 0 0 chr1 277849364 277849385 -4344279 + AT_rich Low_complexity Low_complexity 1 21 0 258 260 94 31 chr1 277849650 277849777 -4343887 - L1MDb LINE L1 -4642 3104 2970 239 222 0 0 chr1 277849765 277849819 -4343845 - L1MB8 LINE L1 -1 6177 6124 * 4779 56 8 12 chr1 277849829 277850889 -4342775 - SVA Other Other -947 1385 2 185 83 28 0 chr1 277850898 277850934 -4342730 + (GGGAGA)n Simple_repeat Simple_repeat 3 39 0 527 217 25 8 chr1 277850934 277851054 -4342610 - L1MB8 LINE L1 -42 6136 6015 305 265 92 32 chr1 277851063 277851228 -4342436 - L1M1 LINE L1 -4663 2902 2734 1392 195 3 46 chr1 277852884 277853186 -4340478 - AluJo SINE Alu -23 289 1 312 208 76 76 chr1 277854166 277854310 -4339354 - L1MC5 LINE L1 -44 7917 7774 613 134 34 0 chr1 277854391 277854510 -4339154 + (TATG)n Simple_repeat Simple_repeat 2 124 0 400 267 87 28 chr1 277854512 277854944 -4338720 - L1MDb LINE L1 -4977 2588 2161 227 191 21 21 chr1 277855473 277855520 -4338144 - L1MDb LINE L1 -6023 1532 1486 351 292 0 22 chr1 277855689 277855778 -4337886 - MER8 DNA MER2_type -151 88 2 264 222 37 25 chr1 277855779 277855860 -4337804 - L1MC5 LINE L1 -184 7777 7696 497 254 99 73 chr1 277855885 277856188 -4337476 - L1MC5 LINE L1 -340 7621 7311 246 235 103 15 chr1 277856344 277856480 -4337184 - L1MC4 LINE L1 -774 7268 7121 1371 167 35 121 chr1 277856594 277856990 -4336674 - MLT1A1 LTR MaLR -3 362 1 225 74 0 0 chr1 277858057 277858084 -4335580 - Alu SINE Alu -187 112 86 2203 104 17 0 chr1 277859130 277859429 -4334235 - AluSq SINE Alu -9 304 1 205 288 0 0 chr1 277859685 277859751 -4333913 + MIR SINE MIR 189 254 -8 217 227 42 84 chr1 277859819 277859938 -4333726 + L2 LINE L2 2937 3050 -222 1714 152 30 34 chr1 277860150 277860446 -4333218 - AluJb SINE Alu -17 295 1 279 0 0 0 chr1 277860472 277860503 -4333161 + (TG)n Simple_repeat Simple_repeat 2 32 0 211 190 17 35 chr1 277860974 277861032 -4332632 - L2 LINE L2 -1 3312 3256 490 211 138 2 chr1 277861626 277861809 -4331855 + MER63 DNA MER1_type 1 1688 0 2221 121 10 0 chr1 277863464 277863770 -4329894 + AluSx SINE Alu 1 309 -3 183 358 11 21 chr1 277864351 277864446 -4329218 + MIR SINE MIR 20 113 -95 254 246 43 14 chr1 277864487 277864556 -4329108 + MIR3 SINE MIR 1 71 -137 3429 248 51 31 chr1 277866519 277868206 -4325458 + L1MDa LINE L1 902 5602 -938 2289 150 17 19 chr1 277868206 277868620 -4325044 + L1MB3 LINE L1 5771 6183 0 4072 140 37 39 chr1 277868620 277869384 -4324280 + L1MDa LINE L1 1572 2333 -4207 294 175 38 0 chr1 277869390 277869470 -4324194 + (TA)n Simple_repeat Simple_repeat 1 83 0 2368 201 64 42 chr1 277869470 277870371 -4323293 + L1MDa LINE L1 2316 3237 -3303 22 0 0 0 chr1 277871613 277871635 -4322029 + AT_rich Low_complexity Low_complexity 1 22 0 220 212 30 91 chr1 277872713 277872779 -4320885 + MIR3 SINE MIR 117 178 -30 654 109 0 0 chr1 277873938 277874039 -4319625 + (TC)n Simple_repeat Simple_repeat 1 101 0 316 256 167 51 chr1 277874540 277874696 -4318968 - MER5B DNA MER1_type 0 178 5 207 69 0 0 chr1 277874808 277874837 -4318827 + (CACCC)n Simple_repeat Simple_repeat 3 31 0 1279 253 83 14 chr1 277874904 277875355 -4318309 - MLT1G LTR MaLR -3 587 46 195 265 59 15 chr1 277875358 277875426 -4318238 - L2 LINE L2 -775 2539 2469 217 258 32 48 chr1 277876988 277877050 -4316614 - MIR3 SINE MIR -23 185 125 201 282 118 27 chr1 277877352 277877462 -4316202 - MIR SINE MIR -23 239 120 927 60 26 0 chr1 277877700 277877817 -4315847 - L1PA7 LINE L1 -1 6153 6034 9740 79 14 2 chr1 277877920 277879888 -4313776 - L1PA7 LINE L1 -131 6023 4038 6176 87 5 15 chr1 277879883 277880868 -4312796 + L1P3 LINE L1 943 1916 -4545 * 547 164 124 62 chr1 277880868 277881045 -4312619 - MLT1H LTR MaLR -4 545 358 382 257 64 0 chr1 277881181 277881321 -4312343 - MLT1H LTR MaLR -389 160 12 269 0 0 53 chr1 277881341 277881379 -4312285 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 1957 167 49 3 chr1 277881439 277881768 -4311896 + MER2 DNA MER2_type 1 344 0 235 289 146 17 chr1 277883366 277883605 -4310059 - L1MC4a LINE L1 -1371 6437 6168 1058 215 97 79 chr1 277883637 277883911 -4309753 - L1MC4a LINE L1 -2080 5728 5460 1816 151 27 23 chr1 277883911 277884210 -4309454 - AluSx SINE Alu -12 300 1 1058 215 97 79 chr1 277884210 277884221 -4309443 - L1MC4a LINE L1 -2348 5460 5451 1799 159 13 10 chr1 277884221 277884523 -4309141 - AluJo SINE Alu -9 303 1 1058 215 97 79 chr1 277884523 277884576 -4309088 - L1MC4a LINE L1 -2357 5451 5383 767 143 14 43 chr1 277884582 277884722 -4308942 - AluJo SINE Alu -176 136 1 197 119 24 0 chr1 277884725 277884767 -4308897 + (TCTG)n Simple_repeat Simple_repeat 4 46 0 6302 100 44 4 chr1 277884773 277885735 -4307929 - L1PA13 LINE L1 -8 6155 5169 294 191 29 38 chr1 277885737 277885842 -4307822 - L1MC4a LINE L1 -2449 5359 5256 1952 153 3 0 chr1 277885959 277886253 -4307411 + AluJb SINE Alu 1 295 -17 473 297 88 84 chr1 277886415 277886727 -4306937 + ERVL LTR ERVL 1045 1361 -4293 2309 93 0 20 chr1 277886727 277887027 -4306637 + AluSg SINE Alu 1 294 -16 473 297 88 84 chr1 277887027 277887236 -4306428 + ERVL LTR ERVL 1361 1568 -4086 600 341 60 14 chr1 277887240 277887705 -4305959 + ERVL LTR ERVL 2527 3043 -2442 1531 295 56 42 chr1 277887717 277888315 -4305349 + ERVL LTR ERVL 3232 3941 -1823 1565 135 0 0 chr1 277888315 277888530 -4305134 + AluSg/x SINE Alu 75 289 -21 1531 295 56 42 chr1 277888530 277888710 -4304954 + ERVL LTR ERVL 3941 4117 -1647 22 35 0 0 chr1 277888786 277888815 -4304849 + AT_rich Low_complexity Low_complexity 1 29 0 687 300 65 46 chr1 277888832 277889087 -4304577 + ERVL LTR ERVL 4118 4381 -1273 414 0 0 0 chr1 277889087 277889133 -4304531 + (TG)n Simple_repeat Simple_repeat 1 46 0 687 300 65 46 chr1 277889133 277889184 -4304480 + ERVL LTR ERVL 4381 4430 -1224 492 241 88 0 chr1 277889445 277889648 -4304016 + L1ME LINE L1 5257 5482 -680 1626 158 35 7 chr1 277889750 277889913 -4303751 - AluJb SINE Alu -19 293 117 207 0 0 0 chr1 277889913 277889936 -4303728 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1626 158 35 7 chr1 277889936 277890057 -4303607 - AluJb SINE Alu -195 117 1 671 269 61 37 chr1 277890117 277890618 -4303046 - L1MEd LINE L1 -4862 1257 789 16074 163 17 14 chr1 277890846 277894952 -4298712 - L1MA3 LINE L1 0 7724 3602 6330 185 52 49 chr1 277894955 277897206 -4296458 - L1PA10 LINE L1 0 6483 4241 2286 112 3 3 chr1 277897206 277897518 -4296146 - AluSq SINE Alu -1 312 1 6330 185 52 49 chr1 277897518 277898856 -4294808 - L1PA10 LINE L1 -2242 4241 2909 1757 174 14 0 chr1 277898856 277899171 -4294493 - AluSx SINE Alu 0 319 1 6330 185 52 49 chr1 277899171 277901747 -4291917 - L1PA10 LINE L1 -3574 2909 107 * 12229 161 104 19 chr1 277901745 277904665 -4288999 - L1MA3 LINE L1 -4053 3512 13 3569 200 22 26 chr1 277905715 277906415 -4287249 - L1MB3 LINE L1 -9 6174 5476 261 0 0 0 chr1 277906415 277906444 -4287220 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 3569 200 22 26 chr1 277906444 277906518 -4287146 - L1MB3 LINE L1 -707 5476 5403 213 371 129 0 chr1 277907908 277908032 -4285632 - L2 LINE L2 0 3272 3133 243 251 29 21 chr1 277908038 277908151 -4285513 + CT-rich Low_complexity Low_complexity 3 179 0 1796 156 33 3 chr1 277908156 277908457 -4285207 - AluJo SINE Alu -2 310 1 270 333 16 40 chr1 277908930 277909056 -4284608 + L2 LINE L2 3150 3272 0 311 83 33 100 chr1 277909568 277909628 -4284036 - MLT2D LTR ERVL 0 414 342 424 75 0 0 chr1 277910330 277910397 -4283267 - L1P LINE L1 -830 5316 5250 694 88 0 0 chr1 277910409 277910500 -4283164 - L1P3 LINE L1 -6364 97 7 1995 141 21 0 chr1 277910651 277910941 -4282723 + AluSx SINE Alu 1 296 -16 1757 148 39 18 chr1 277910948 277911231 -4282433 + AluJo SINE Alu 1 289 -23 2413 67 3 10 chr1 277911783 277912083 -4281581 - AluY SINE Alu 0 311 14 2057 114 4 0 chr1 277912193 277912505 -4281159 - AluSx SINE Alu 0 313 1 452 302 27 76 chr1 277912653 277913021 -4280643 + L1ME4a LINE L1 5581 5930 -191 423 0 0 0 chr1 277913034 277913081 -4280583 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 145 97 16 chr1 277913091 277913153 -4280511 + L1ME4a LINE L1 5998 6064 -57 342 219 0 0 chr1 277914234 277914307 -4279357 - L2 LINE L2 0 3313 3241 514 291 57 0 chr1 277916445 277916603 -4277061 - MIR3 SINE MIR -1 207 41 214 182 0 0 chr1 277916633 277916666 -4276998 - MIR SINE MIR -135 73 41 214 182 0 0 chr1 277916696 277916729 -4276935 - MIR SINE MIR -135 73 41 292 279 70 0 chr1 277916865 277916951 -4276713 + MIR SINE MIR 49 140 -68 240 269 67 8 chr1 277917045 277917165 -4276499 - MIR SINE MIR -79 129 30 195 256 81 35 chr1 277921154 277921240 -4272424 + MIR SINE MIR 94 183 -79 228 330 27 0 chr1 277923704 277923816 -4269848 - MIR SINE MIR -62 146 32 2488 65 3 0 chr1 277924027 277924319 -4269345 - AluY SINE Alu -18 293 1 439 236 9 9 chr1 277924705 277924815 -4268849 - MER53 DNA DNA -79 110 1 294 347 95 0 chr1 277925860 277926007 -4267657 - MIR SINE MIR -10 252 92 391 157 29 14 chr1 277926069 277926139 -4267525 + L1MEc LINE L1 371 441 -5955 497 104 0 0 chr1 277926141 277926208 -4267456 + MSTB LTR MaLR 1 67 -359 284 113 113 0 chr1 277926213 277926266 -4267398 - MSTB LTR MaLR -323 103 45 1728 99 4 4 chr1 277927164 277927397 -4266267 + AluSg/x SINE Alu 70 302 -10 1781 122 100 4 chr1 277927411 277927690 -4265974 + AluSx SINE Alu 1 306 -6 293 189 137 11 chr1 277928226 277928321 -4265343 - MER114 LTR ERV -149 499 393 294 185 108 0 chr1 277928844 277928909 -4264755 - MER94 DNA DNA -62 72 1 247 219 88 80 chr1 277928961 277929023 -4264641 + L1MEc LINE L1 103 163 -6042 2284 70 35 0 chr1 277929023 277929310 -4264354 - AluSp SINE Alu -16 297 1 247 219 88 80 chr1 277929310 277929384 -4264280 + L1MEc LINE L1 163 240 -5965 572 341 76 9 chr1 277929583 277929911 -4263753 + L1MEc LINE L1 505 854 -5351 898 235 30 40 chr1 277930018 277930320 -4263344 + L1MEc LINE L1 32 330 -6066 1412 89 243 28 chr1 277931082 277931329 -4262335 - AluJb SINE Alu -12 300 1 578 278 31 16 chr1 277931367 277931586 -4262078 - MIR SINE MIR 0 262 45 1938 141 13 20 chr1 277933679 277933977 -4259687 - AluJo SINE Alu -12 300 5 374 298 29 0 chr1 277934358 277934462 -4259202 + MLT1J LTR MaLR 1 107 -404 2140 115 0 3 chr1 277934623 277934911 -4258753 - AluSx SINE Alu -25 287 1 2091 201 87 36 chr1 277935172 277935686 -4257978 - MLT1F LTR MaLR -5 526 2 378 258 40 40 chr1 277938879 277939003 -4254661 - MIR3 SINE MIR -4 204 81 2188 133 7 0 chr1 277941101 277941401 -4252263 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr1 277942469 277942507 -4251157 + GC_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 277948029 277948053 -4245611 + (GGA)n Simple_repeat Simple_repeat 2 25 0 417 289 0 0 chr1 277948552 277948647 -4245017 + MER82 DNA MER2_type 1 95 -558 332 167 83 0 chr1 277948647 277948690 -4244974 + MADE1 DNA Mariner 3 41 -39 2338 101 0 7 chr1 277948690 277948998 -4244666 - AluSx SINE Alu -6 306 1 332 167 83 0 chr1 277948998 277949026 -4244638 + MADE1 DNA Mariner 41 80 0 2609 62 0 0 chr1 277949450 277949755 -4243909 + AluY SINE Alu 1 305 -6 1933 234 29 2 chr1 277949838 277950283 -4243381 + MER82 DNA MER2_type 197 653 0 2469 97 0 0 chr1 277951191 277951501 -4242163 + AluSx SINE Alu 2 311 -1 1140 232 9 5 chr1 277951666 277951886 -4241778 + MER58A DNA MER1_type 4 224 0 2254 113 0 6 chr1 277952066 277952377 -4241287 - AluSc SINE Alu 0 309 1 731 349 77 15 chr1 277954854 277955178 -4238486 - L3 LINE CR1 -2 1575 1232 1072 231 112 45 chr1 277955701 277956103 -4237561 + MER77 LTR ERV1 177 605 0 307 312 85 58 chr1 277957599 277957929 -4235735 - L1M2a LINE L1 -5742 1426 1088 2005 165 45 97 chr1 277959419 277959798 -4233866 - L1MB3 LINE L1 -3 6180 5838 3907 91 29 0 chr1 277959798 277960359 -4233305 + L1MA1 LINE L1 5726 6302 0 2005 165 45 97 chr1 277960359 277960537 -4233127 - L1MB3 LINE L1 -345 5838 5652 435 234 71 19 chr1 277960557 277960711 -4232953 + L1MA9 LINE L1 6146 6307 -5 333 47 0 0 chr1 277960791 277960834 -4232830 + (TA)n Simple_repeat Simple_repeat 2 44 0 1618 149 52 3 chr1 277960935 277961223 -4232441 - L1PB3 LINE L1 0 6154 5853 1783 216 40 15 chr1 277961223 277961757 -4231907 - L1MB3 LINE L1 -511 5669 5122 2084 113 3 7 chr1 277962081 277962395 -4231269 + AluSx SINE Alu 1 313 0 2374 104 0 16 chr1 277962877 277963194 -4230470 + AluSx SINE Alu 1 312 0 239 287 102 28 chr1 277963361 277963469 -4230195 + L2 LINE L2 3142 3257 -15 1958 126 37 10 chr1 277963594 277963888 -4229776 + AluJb SINE Alu 1 302 -10 1921 116 0 12 chr1 277964280 277964538 -4229126 + AluSx SINE Alu 54 308 -4 256 263 0 0 chr1 277966131 277966188 -4227476 - MIR3 SINE MIR -28 180 124 521 280 45 0 chr1 277966198 277966355 -4227309 - MER20 DNA MER1_type 0 219 56 211 300 43 29 chr1 277966356 277966426 -4227238 - MIR SINE MIR -118 90 20 1118 138 0 18 chr1 277968386 277968553 -4225111 + FRAM SINE Alu 1 164 -2 2421 83 7 3 chr1 277968561 277968688 -4224976 + AluSp SINE Alu 1 126 -187 293 0 27 0 chr1 277968688 277968725 -4224939 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2421 83 7 3 chr1 277968725 277968898 -4224766 + AluSp SINE Alu 126 302 -11 338 202 21 11 chr1 277969620 277969714 -4223950 - LTR33 LTR ERVL -403 118 24 295 98 33 0 chr1 277970424 277970485 -4223179 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 817 204 13 6 chr1 277970799 277970956 -4222708 + AluJb SINE Alu 136 293 -19 549 0 0 0 chr1 277970957 277971018 -4222646 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 374 282 68 37 chr1 277971707 277971879 -4221785 + MIR3 SINE MIR 3 185 -77 1996 175 103 0 chr1 277973053 277973441 -4220223 + MSTA LTR MaLR 1 428 0 874 142 14 0 chr1 277974114 277974255 -4219409 + MER5A DNA MER1_type 1 143 -46 1547 179 70 7 chr1 277975037 277975208 -4218456 - AluJo SINE Alu -5 307 109 237 33 0 0 chr1 277975208 277975238 -4218426 + (TG)n Simple_repeat Simple_repeat 2 31 0 1547 179 70 7 chr1 277975238 277975351 -4218313 - AluJo SINE Alu -203 109 5 191 291 0 89 chr1 277975363 277975442 -4218222 - MIR SINE MIR -80 182 111 2015 39 0 9 chr1 277975671 277975904 -4217760 + AluY SINE Alu 79 309 -2 2273 89 3 3 chr1 277976314 277976605 -4217059 + AluSx SINE Alu 1 291 -21 1467 209 4 0 chr1 277976690 277976953 -4216711 + Tigger7 DNA MER2_type 2 265 -468 461 152 54 11 chr1 277976955 277977047 -4216617 + Tigger7 DNA MER2_type 2391 2486 -1 2207 123 0 3 chr1 277977207 277977517 -4216147 - AluSg SINE Alu -1 309 1 23 54 0 0 chr1 277978122 277978159 -4215505 + AT_rich Low_complexity Low_complexity 1 37 0 195 139 0 0 chr1 277979907 277979943 -4213721 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 347 305 74 39 chr1 277980255 277980458 -4213206 - L2 LINE L2 -668 2646 2437 2689 49 0 3 chr1 277980523 277980831 -4212833 + AluY SINE Alu 1 307 -4 1189 152 0 0 chr1 277980947 277981118 -4212546 - AluJb SINE Alu -10 302 132 221 57 29 0 chr1 277981118 277981153 -4212511 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1775 128 12 8 chr1 277981153 277981410 -4212254 - AluSx SINE Alu -31 281 24 1721 171 38 17 chr1 277982232 277982525 -4211139 - AluJo SINE Alu -13 299 1 2011 96 51 54 chr1 277982544 277982857 -4210807 - AluSx SINE Alu 0 312 1 2077 113 25 0 chr1 277983823 277984106 -4209558 - AluSg SINE Alu -20 290 1 2871 120 24 0 chr1 277984573 277984989 -4208675 + MSTB LTR MaLR 1 426 0 2259 114 0 13 chr1 277985164 277985479 -4208185 + AluSx SINE Alu 1 311 -1 618 129 43 0 chr1 277985614 277985707 -4207957 - FRAM SINE Alu -23 153 57 1586 198 68 28 chr1 277985739 277986063 -4207601 + MER1B DNA MER1_type 1 337 0 291 313 35 17 chr1 277986505 277986620 -4207044 - L2 LINE L2 -290 2982 2866 564 168 0 28 chr1 277987000 277987107 -4206557 - MER7A DNA MER2_type -228 118 17 200 307 220 27 chr1 277987194 277987490 -4206174 - L2 LINE L2 -1530 1784 1432 238 193 45 91 chr1 277987648 277987736 -4205928 - L2 LINE L2 -3 3269 3186 1783 153 0 27 chr1 277987747 277988042 -4205622 + AluJo SINE Alu 7 293 -19 216 125 0 0 chr1 277989020 277989052 -4204612 + MIR SINE MIR 110 141 -67 212 289 0 0 chr1 277989182 277989227 -4204437 + MIR SINE MIR 185 229 -33 184 259 17 35 chr1 277990572 277990630 -4203034 - L2 LINE L2 -80 3192 3136 936 98 23 15 chr1 277990908 277991041 -4202623 + AluJo SINE Alu 1 134 -178 1970 113 3 16 chr1 277991042 277991351 -4202313 + AluSg SINE Alu 1 305 -5 25 23 0 23 chr1 277991384 277991410 -4202254 + AT_rich Low_complexity Low_complexity 1 27 -15 1581 158 32 4 chr1 277991410 277991689 -4201975 - AluJb SINE Alu -25 287 1 25 23 0 23 chr1 277991689 277991705 -4201959 + AT_rich Low_complexity Low_complexity 27 42 0 258 298 174 23 chr1 277992200 277992458 -4201206 - L2 LINE L2 -148 3124 2828 462 308 8 8 chr1 277993235 277993368 -4200296 - MIR SINE MIR -71 191 59 603 231 15 8 chr1 277993916 277994046 -4199618 + FLAM_A SINE Alu 1 131 -2 1556 192 6 19 chr1 277994054 277994367 -4199297 + AluJb SINE Alu 3 311 -1 734 114 5 49 chr1 277994376 277994560 -4199104 + (GGA)n Simple_repeat Simple_repeat 3 178 0 241 333 146 0 chr1 277996244 277996340 -4197324 + L2 LINE L2 3163 3272 0 315 320 171 22 chr1 277997447 277997675 -4195989 + MIR SINE MIR 1 262 0 201 224 35 35 chr1 277997727 277997785 -4195879 + MIR SINE MIR 79 136 -126 1922 108 52 0 chr1 277997863 277998149 -4195515 + AluSx SINE Alu 1 301 -11 1643 157 129 36 chr1 277998272 277998594 -4195070 + MLT2D LTR ERVL 17 378 -36 306 0 0 0 chr1 277998594 277998628 -4195036 + (CA)n Simple_repeat Simple_repeat 1 34 0 1643 157 129 36 chr1 277998628 277998669 -4194995 + MLT2D LTR ERVL 378 414 0 531 302 59 43 chr1 277998672 277998977 -4194687 - L2 LINE L2 -16 3297 2988 1558 170 14 3 chr1 277999400 277999682 -4193982 + AluJb SINE Alu 1 285 -27 2076 88 7 0 chr1 278000685 278000958 -4192706 + AluSx SINE Alu 22 296 -16 195 162 0 0 chr1 278001596 278001633 -4192031 + (CA)n Simple_repeat Simple_repeat 2 38 0 2210 90 10 3 chr1 278001701 278002001 -4191663 + AluSq SINE Alu 1 302 -11 302 303 0 0 chr1 278002123 278002199 -4191465 + MIR3 SINE MIR 95 170 -38 237 297 55 22 chr1 278002490 278002581 -4191083 - L2 LINE L2 -46 3226 3133 2168 90 3 7 chr1 278003139 278003438 -4190226 - AluSx SINE Alu -14 298 1 869 94 0 0 chr1 278004399 278004554 -4189110 + AluSp/q SINE Alu 176 330 0 398 276 35 52 chr1 278005227 278005343 -4188321 + L2 LINE L2 3189 3302 -11 2216 104 0 0 chr1 278005345 278005643 -4188021 + AluSx SINE Alu 1 298 -14 217 310 14 14 chr1 278006177 278006248 -4187416 + MIR3 SINE MIR 109 179 -29 2391 75 0 0 chr1 278006771 278007078 -4186586 - AluSg SINE Alu -3 307 1 393 141 0 0 chr1 278007943 278008007 -4185657 + L1MB2 LINE L1 6106 6169 -2 1668 163 0 0 chr1 278008405 278008675 -4184989 - AluJo SINE Alu -42 270 1 2303 80 0 0 chr1 278010793 278011094 -4182570 + AluSx SINE Alu 1 301 -11 4240 248 98 13 chr1 278012265 278013631 -4180033 + L2 LINE L2 1583 3059 -254 1748 256 89 35 chr1 278013632 278014195 -4179469 + MLT1G1 LTR MaLR 3 595 0 264 258 0 121 chr1 278014243 278014367 -4179297 + L2 LINE L2 3125 3233 -80 249 213 0 139 chr1 278014372 278014494 -4179170 + L3 LINE CR1 1177 1281 -296 195 269 185 9 chr1 278014511 278014619 -4179045 - MIR SINE MIR -34 228 102 190 361 12 12 chr1 278014617 278014700 -4178964 + MIR SINE MIR 30 112 -150 * 355 232 40 10 chr1 278014798 278014897 -4178767 + MIR SINE MIR 117 218 -44 295 351 89 36 chr1 278014995 278015220 -4178444 + L3 LINE CR1 1278 1514 -63 2050 120 3 3 chr1 278015663 278015964 -4177700 + AluSx SINE Alu 1 301 -11 2193 110 0 0 chr1 278016285 278016584 -4177080 + AluSg SINE Alu 1 299 -11 2496 40 0 0 chr1 278018216 278018512 -4175152 + AluY SINE Alu 16 311 0 1392 176 47 17 chr1 278018630 278018931 -4174733 - AluJo SINE Alu -2 310 1 4653 121 4 10 chr1 278020131 278021031 -4172633 - L1MA3 LINE L1 -376 5929 5034 22 0 0 0 chr1 278021164 278021186 -4172478 + AT_rich Low_complexity Low_complexity 1 22 0 2525 52 0 0 chr1 278022913 278023221 -4170443 + AluY SINE Alu 1 308 -3 472 313 192 19 chr1 278025580 278025992 -4167672 - L2 LINE L2 -1073 2241 1759 280 287 37 29 chr1 278026401 278026537 -4167127 + MIR SINE MIR 116 252 -10 28 48 0 0 chr1 278026682 278026724 -4166940 + AT_rich Low_complexity Low_complexity 1 42 0 2108 166 17 8 chr1 278026942 278027304 -4166360 + MLT1A1 LTR MaLR 1 365 0 796 270 76 21 chr1 278027552 278027789 -4165875 + MIR SINE MIR 13 262 0 2416 49 0 16 chr1 278028577 278028883 -4164781 + AluY SINE Alu 1 301 -10 303 398 81 6 chr1 278028905 278029066 -4164598 + L2 LINE L2 3100 3272 0 2435 50 0 13 chr1 278029391 278029691 -4163973 - AluY SINE Alu -15 296 1 347 169 0 28 chr1 278029813 278029884 -4163780 - MLT1A1 LTR MaLR -294 71 3 267 300 220 0 chr1 278029978 278030078 -4163586 + L2 LINE L2 3177 3298 -15 396 0 0 0 chr1 278030083 278030127 -4163537 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 1175 226 24 17 chr1 278030262 278030558 -4163106 + AluJo SINE Alu 5 302 0 396 0 0 0 chr1 278030573 278030617 -4163047 + (TA)n Simple_repeat Simple_repeat 2 45 0 2057 163 107 64 chr1 278031424 278031566 -4162098 + MLT1D LTR MaLR 1 135 -370 1985 118 35 0 chr1 278031566 278031855 -4161809 - AluSx SINE Alu -13 299 1 2057 163 107 64 chr1 278031855 278032196 -4161468 + MLT1D LTR MaLR 135 505 0 612 206 8 32 chr1 278032855 278032981 -4160683 + MER5B DNA MER1_type 1 123 -55 863 213 171 58 chr1 278033104 278033157 -4160507 - MLT1C LTR MaLR -1 466 420 2276 100 0 0 chr1 278033157 278033466 -4160198 - AluSx SINE Alu -3 309 1 1735 92 0 0 chr1 278033466 278033693 -4159971 - AluSx SINE Alu -85 227 1 863 213 171 58 chr1 278033693 278033966 -4159698 - MLT1C LTR MaLR -46 421 102 426 164 0 0 chr1 278033972 278034045 -4159619 - MADE1 DNA Mariner -7 73 1 325 70 53 0 chr1 278034045 278034092 -4159572 - MLT1C LTR MaLR -356 111 62 230 161 0 18 chr1 278034092 278034148 -4159516 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 330 323 114 12 chr1 278035294 278035461 -4158203 + MIR SINE MIR 73 256 -6 24 67 0 0 chr1 278036086 278036131 -4157533 + AT_rich Low_complexity Low_complexity 1 45 0 2271 90 0 0 chr1 278036167 278036466 -4157198 + AluSx SINE Alu 1 299 -13 383 242 45 30 chr1 278037049 278037181 -4156483 - MIR3 SINE MIR -69 139 6 186 103 0 0 chr1 278037425 278037454 -4156210 + (A)n Simple_repeat Simple_repeat 1 29 0 4260 162 28 22 chr1 278037783 278037857 -4155807 - L1MB3 LINE L1 0 6183 6111 1580 130 0 4 chr1 278037857 278038088 -4155576 - MER30 DNA MER1_type 0 230 1 4260 162 28 22 chr1 278038088 278038829 -4154835 - L1MB3 LINE L1 -72 6111 5363 422 234 0 105 chr1 278038829 278038953 -4154711 + MIR SINE MIR 79 189 -73 180 0 0 0 chr1 278039012 278039032 -4154632 + (TG)n Simple_repeat Simple_repeat 1 20 0 2164 85 3 0 chr1 278039032 278039348 -4154316 - AluSp SINE Alu 0 317 1 234 213 32 21 chr1 278039364 278039458 -4154206 + (TA)n Simple_repeat Simple_repeat 2 96 0 310 209 45 0 chr1 278039464 278039531 -4154133 - L1MC4 LINE L1 -1333 6709 6640 215 329 129 0 chr1 278040460 278040545 -4153119 + MIR SINE MIR 16 111 -97 451 233 95 0 chr1 278040783 278040899 -4152765 - MIR SINE MIR 0 262 136 649 232 39 7 chr1 278040923 278041078 -4152586 - AluJo SINE Alu -31 281 122 1870 111 0 0 chr1 278042501 278042745 -4150919 + AluSx SINE Alu 62 305 -7 443 198 0 91 chr1 278042753 278042874 -4150790 - L1MA7 LINE L1 -165 6126 6017 2138 133 3 0 chr1 278043636 278043945 -4149719 - AluSq SINE Alu -3 310 1 1060 168 41 32 chr1 278043981 278044201 -4149463 + AluJo SINE Alu 84 305 -7 2263 112 3 0 chr1 278045599 278045894 -4147770 - AluSq SINE Alu -17 296 1 3566 204 79 77 chr1 278046405 278046692 -4146972 + Charlie1a DNA MER1_type 1 286 -2475 2096 92 51 7 chr1 278046692 278046984 -4146680 - AluSc SINE Alu -4 305 1 3566 204 79 77 chr1 278046984 278047286 -4146378 + Charlie1a DNA MER1_type 286 586 -2175 712 215 0 15 chr1 278047286 278047421 -4146243 + FLAM_A SINE Alu 1 133 0 3566 204 79 77 chr1 278047421 278047936 -4145728 + Charlie1a DNA MER1_type 586 1108 -347 700 246 18 12 chr1 278047992 278048163 -4145501 + FRAM SINE Alu 1 172 -4 638 139 100 39 chr1 278048163 278048343 -4145321 + Charlie1a DNA MER1_type 1178 1368 -87 518 242 34 28 chr1 278048370 278048548 -4145116 + HAL1 LINE L1 1854 2032 -475 376 240 0 0 chr1 278048581 278048656 -4145008 + Charlie1a DNA MER1_type 1381 1455 0 264 242 78 92 chr1 278048668 278048821 -4144843 - HAL1 LINE L1 -238 2269 2119 4157 260 80 35 chr1 278048892 278049370 -4144294 - HAL1 LINE L1 -828 1679 1224 2284 113 3 0 chr1 278049370 278049671 -4143993 + AluSq SINE Alu 1 302 -11 4157 260 80 35 chr1 278049671 278050798 -4142866 - HAL1 LINE L1 -1283 1224 2 2076 152 0 0 chr1 278050822 278051131 -4142533 + AluSx SINE Alu 1 309 -3 2316 105 0 6 chr1 278051159 278051474 -4142190 - AluSq SINE Alu 0 313 1 390 262 48 10 chr1 278052061 278052164 -4141500 - MER63 DNA MER1_type -329 733 1 389 269 52 8 chr1 278052286 278052420 -4141244 + MIR SINE MIR 6 145 -117 1465 92 19 14 chr1 278052937 278053144 -4140520 + AluSq SINE Alu 104 311 -2 1429 135 5 9 chr1 278053443 278053658 -4140006 - AluJb SINE Alu -15 297 84 2270 116 0 0 chr1 278053694 278053995 -4139669 - AluSp SINE Alu -12 301 1 195 100 0 0 chr1 278054076 278054106 -4139558 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 273 339 11 28 chr1 278054136 278054313 -4139351 + L3 LINE CR1 1165 1338 -239 365 346 87 0 chr1 278054429 278054614 -4139050 + L3 LINE CR1 1345 1545 -32 67 34 0 0 chr1 278055196 278055284 -4138380 + AT_rich Low_complexity Low_complexity 1 88 0 759 242 160 49 chr1 278055294 278055662 -4138002 - L1MC4 LINE L1 -23 8019 7611 196 298 0 0 chr1 278056344 278056401 -4137263 - MIR SINE MIR -121 141 85 1658 137 15 55 chr1 278057025 278057354 -4136310 + MER33 DNA MER1_type 5 320 -4 2260 81 0 24 chr1 278058067 278058405 -4135259 + AluSx SINE Alu 1 312 0 1793 153 0 14 chr1 278059451 278059732 -4133932 - AluJo SINE Alu -14 298 22 269 252 10 0 chr1 278060020 278060123 -4133541 + (TG)n Simple_repeat Simple_repeat 2 105 0 22 0 0 0 chr1 278060691 278060713 -4132951 + AT_rich Low_complexity Low_complexity 1 22 0 236 279 0 29 chr1 278061948 278062016 -4131648 - MIR SINE MIR -137 125 60 196 305 0 0 chr1 278062768 278062827 -4130837 - L2 LINE L2 -16 3256 3198 2352 115 0 0 chr1 278063259 278063571 -4130093 - AluSx SINE Alu 0 312 1 303 321 14 13 chr1 278063873 278064005 -4129659 + CT-rich Low_complexity Low_complexity 1 225 0 187 336 92 15 chr1 278064251 278064382 -4129282 - L2 LINE L2 -42 3230 3090 2479 94 0 0 chr1 278064830 278065138 -4128526 - AluSx SINE Alu -4 308 1 392 233 0 0 chr1 278065352 278065442 -4128222 + MIR SINE MIR 155 244 -18 1769 149 51 4 chr1 278066944 278067219 -4126445 - AluJb SINE Alu -24 288 1 1087 113 8 13 chr1 278067226 278067465 -4126199 - L1MB3 LINE L1 -1 6182 5891 2340 104 0 7 chr1 278069863 278070170 -4123494 + AluSg SINE Alu 1 305 -5 255 276 0 0 chr1 278070368 278070455 -4123209 + MIR SINE MIR 57 143 -119 301 339 8 17 chr1 278071426 278071544 -4122120 + MIR SINE MIR 35 151 -111 202 189 0 94 chr1 278072286 278072339 -4121325 + L2 LINE L2 3224 3271 -1 2262 80 29 35 chr1 278072467 278072778 -4120886 + AluSp SINE Alu 1 309 -4 409 300 70 61 chr1 278072889 278073216 -4120448 - L2 LINE L2 -4 3268 2939 278 261 81 27 chr1 278073875 278073986 -4119678 + MIR3 SINE MIR 91 207 -1 651 204 61 22 chr1 278076345 278076526 -4117138 - MER20 DNA MER1_type 0 219 32 340 287 131 0 chr1 278076844 278076966 -4116698 - MIR3 SINE MIR -24 184 47 277 238 59 59 chr1 278077138 278077239 -4116425 + MIR SINE MIR 116 216 -46 219 313 172 49 chr1 278077763 278078089 -4115575 + L3 LINE CR1 1205 1570 -7 2232 132 3 0 chr1 278079291 278079601 -4114063 + AluSx SINE Alu 1 311 -1 334 368 50 12 chr1 278079681 278079923 -4113741 - MIR SINE MIR -8 254 4 1733 171 3 32 chr1 278080300 278080615 -4113049 - AluJo SINE Alu -6 306 1 1805 111 30 15 chr1 278080628 278080890 -4112774 - AluSx SINE Alu -17 295 30 352 156 39 0 chr1 278080892 278080969 -4112695 - L1MA8 LINE L1 -3 6288 6209 497 153 174 5 chr1 278081085 278081275 -4112389 + MER5C DNA MER1_type 15 324 0 2368 80 3 0 chr1 278081869 278082168 -4111496 - AluY SINE Alu -11 300 1 248 200 17 0 chr1 278082637 278082697 -4110967 + CT-rich Low_complexity Low_complexity 4 64 0 2310 100 3 3 chr1 278083789 278084098 -4109566 + AluSp SINE Alu 1 309 -4 299 359 8 0 chr1 278084356 278084484 -4109180 + MER91A DNA MER1_type 1 129 -67 391 287 73 0 chr1 278085509 278085645 -4108019 + MIR SINE MIR 46 191 -71 185 337 53 11 chr1 278085926 278086021 -4107643 - L2 LINE L2 -29 3284 3186 2181 129 0 3 chr1 278086068 278086378 -4107286 - AluSx SINE Alu -3 309 1 1578 176 0 20 chr1 278086850 278087145 -4106519 + AluJo SINE Alu 6 294 -18 691 247 68 0 chr1 278087150 278087369 -4106295 - MIR SINE MIR -1 261 28 265 231 176 37 chr1 278087374 278087482 -4106182 + L2 LINE L2 3191 3313 0 2259 96 0 10 chr1 278087654 278087811 -4105853 - AluSg SINE Alu -22 288 134 2312 98 0 3 chr1 278087811 278088108 -4105556 - AluSg SINE Alu -14 296 1 2259 96 0 10 chr1 278088108 278088241 -4105423 - AluSg SINE Alu -176 134 1 471 268 118 20 chr1 278088289 278088566 -4105098 + L2 LINE L2 2750 3074 -239 2222 116 0 6 chr1 278089647 278089958 -4103706 + AluSg SINE Alu 1 309 -1 1330 249 92 22 chr1 278090957 278091402 -4102262 + LTR16C LTR ERVL 3 478 -13 1320 67 0 0 chr1 278091452 278091632 -4102032 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 456 241 103 0 chr1 278091642 278091758 -4101906 - L2 LINE L2 -7 3265 3138 438 303 48 48 chr1 278091875 278092063 -4101601 + L2 LINE L2 3122 3309 -4 2226 91 0 3 chr1 278092354 278092651 -4101013 + AluSg SINE Alu 1 296 -14 1527 148 148 7 chr1 278092935 278093226 -4100438 - MLT2C1 LTR ERVL -64 333 2 2065 118 14 0 chr1 278093350 278093646 -4100018 - AluSx SINE Alu -12 300 1 1374 221 78 55 chr1 278094971 278095514 -4098150 + L1ME1 LINE L1 5613 6322 -12 2014 145 3 0 chr1 278095525 278095835 -4097829 + AluJb SINE Alu 1 311 -1 2401 44 0 0 chr1 278096404 278096699 -4096965 + AluY SINE Alu 1 295 -16 417 226 171 50 chr1 278098509 278098690 -4094974 - MIR SINE MIR -19 243 41 571 193 28 122 chr1 278098867 278099080 -4094584 - LTR16A1 LTR ERVL 0 457 265 392 200 89 168 chr1 278101701 278101981 -4091683 + L1MC5 LINE L1 7670 7927 -34 1853 198 12 3 chr1 278102350 278102693 -4090971 - MER7A DNA MER2_type 0 346 3 1587 177 31 81 chr1 278103743 278103920 -4089744 + MLT1A1 LTR MaLR 1 185 -180 2523 167 12 38 chr1 278103920 278104418 -4089246 + MER66B LTR ERV1 2 486 0 1587 177 31 81 chr1 278104418 278104554 -4089110 + MLT1A1 LTR MaLR 185 294 -71 2133 114 0 7 chr1 278104554 278104862 -4088802 - AluSx SINE Alu -6 306 1 1587 177 31 81 chr1 278104862 278104931 -4088733 + MLT1A1 LTR MaLR 294 365 0 249 299 31 31 chr1 278106896 278106993 -4086671 + MIR SINE MIR 49 145 -63 1096 308 112 24 chr1 278107390 278107936 -4085728 - L1M4 LINE L1 -2920 3226 2633 2203 97 10 6 chr1 278107941 278108252 -4085412 - AluSx SINE Alu 0 312 1 4522 170 48 25 chr1 278108274 278109522 -4084142 - L1MB4 LINE L1 0 6180 4914 1087 170 9 35 chr1 278109635 278109864 -4083800 - MER96B DNA MER1_type? -194 223 1 335 300 90 40 chr1 278109867 278110067 -4083597 - L1M4 LINE L1 -3598 2548 2339 2235 94 3 0 chr1 278111576 278111884 -4081780 + AluSc SINE Alu 1 309 0 935 261 158 9 chr1 278112333 278112782 -4080882 - L1ME4a LINE L1 -32 6089 5574 437 317 111 27 chr1 278112785 278113047 -4080617 - L1ME4a LINE L1 -699 5543 5260 2102 126 0 0 chr1 278113208 278113518 -4080146 - AluSx SINE Alu -2 310 1 343 304 101 9 chr1 278114112 278114329 -4079335 - L1ME LINE L1 -358 5804 5568 683 223 177 14 chr1 278114395 278114610 -4079054 - MIR SINE MIR -10 252 3 189 283 111 20 chr1 278114723 278114822 -4078842 - MIR SINE MIR -67 141 34 1939 109 55 0 chr1 278116325 278116618 -4077046 - AluSx SINE Alu -3 309 1 212 0 36 0 chr1 278116631 278116659 -4077005 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 798 221 87 14 chr1 278116706 278116914 -4076750 + MER58A DNA MER1_type 1 223 -1 684 196 112 0 chr1 278117649 278117792 -4075872 - AluJb SINE Alu -11 301 143 1500 155 34 68 chr1 278118184 278118507 -4075157 + AluJo SINE Alu 1 312 0 283 250 167 10 chr1 278119063 278119159 -4074505 - MIR SINE MIR -131 131 21 261 0 0 0 chr1 278119199 278119228 -4074436 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 580 271 35 0 chr1 278119557 278119701 -4073963 - MIR SINE MIR -58 204 56 690 189 0 0 chr1 278120685 278120860 -4072804 + (TG)n Simple_repeat Simple_repeat 1 175 0 643 162 0 29 chr1 278120874 278121047 -4072617 + (TG)n Simple_repeat Simple_repeat 1 168 0 2340 48 0 3 chr1 278121326 278121620 -4072044 - AluY SINE Alu -16 295 3 416 281 65 0 chr1 278122218 278122357 -4071307 - LTR33 LTR ERVL -354 167 20 189 0 0 0 chr1 278122531 278122552 -4071112 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2134 101 23 7 chr1 278122981 278123288 -4070376 + AluSq SINE Alu 1 312 -1 2127 82 43 0 chr1 278123950 278124232 -4069432 + AluSx SINE Alu 1 294 -18 252 0 0 0 chr1 278125012 278125040 -4068624 + (GA)n Simple_repeat Simple_repeat 2 29 0 247 295 21 0 chr1 278125259 278125354 -4068310 + (TA)n Simple_repeat Simple_repeat 1 97 0 2491 46 0 0 chr1 278126768 278127070 -4066594 - AluY SINE Alu -9 302 1 2018 115 0 10 chr1 278127486 278127774 -4065890 - AluSx SINE Alu -27 285 1 326 229 64 115 chr1 278128030 278128135 -4065529 - L2 LINE L2 -4 3309 3213 2360 81 0 0 chr1 278128135 278128432 -4065232 - AluSq SINE Alu -16 297 1 326 229 64 115 chr1 278128432 278128483 -4065181 - L2 LINE L2 -100 3213 3161 189 289 19 0 chr1 278128580 278128632 -4065032 + L2 LINE L2 3261 3313 0 966 225 5 28 chr1 278128725 278128938 -4064726 - MER46A DNA MER2_type -7 229 22 250 347 123 18 chr1 278129064 278129234 -4064430 + L2 LINE L2 2983 3170 -102 2302 162 8 39 chr1 278130220 278130451 -4063213 - L1MA4 LINE L1 -4 6296 6060 2134 107 0 3 chr1 278130451 278130749 -4062915 - AluY SINE Alu -14 297 1 2150 98 16 3 chr1 278130749 278131054 -4062610 - AluSx SINE Alu -2 310 1 2302 162 8 39 chr1 278131054 278131289 -4062375 - L1MA4 LINE L1 -238 6062 5843 376 155 0 0 chr1 278131834 278131899 -4061765 + AluJ/FRAM SINE Alu 229 282 -20 3868 165 41 41 chr1 278131905 278132780 -4060884 + L1MB7 LINE L1 5212 6183 -1 1768 129 37 0 chr1 278132839 278133167 -4060497 - AluJb SINE Alu 0 338 1 1102 248 63 86 chr1 278133627 278134185 -4059479 - L2 LINE L2 -1 3312 2771 2193 210 59 8 chr1 278134190 278134700 -4058964 - L1MB7 LINE L1 -19 6165 5630 1871 255 92 5 chr1 278134713 278134772 -4058892 - L2 LINE L2 -538 2776 2724 2212 49 42 0 chr1 278134772 278135056 -4058608 - AluY SINE Alu -15 296 1 1871 255 92 5 chr1 278135056 278135548 -4058116 - L2 LINE L2 -590 2724 2177 666 275 141 41 chr1 278136097 278136323 -4057341 + L3 LINE CR1 1147 1349 -228 1510 187 52 0 chr1 278136323 278136441 -4057223 + AluJb SINE Alu 1 111 -201 203 0 37 0 chr1 278136441 278136468 -4057196 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1510 187 52 0 chr1 278136468 278136638 -4057026 + AluJb SINE Alu 111 304 -8 666 275 141 41 chr1 278136638 278136800 -4056864 + L3 LINE CR1 1349 1574 -3 362 221 32 53 chr1 278137176 278137271 -4056393 - MIR3 SINE MIR -6 202 110 181 320 0 0 chr1 278137367 278137417 -4056247 - L2 LINE L2 -11 3261 3212 2039 109 7 10 chr1 278138427 278138730 -4054934 - AluSg SINE Alu -8 302 1 402 286 228 10 chr1 278139571 278139777 -4053887 - MIR SINE MIR -4 258 8 417 119 24 12 chr1 278141025 278141109 -4052555 + CT-rich Low_complexity Low_complexity 1 85 0 252 0 0 0 chr1 278141110 278141138 -4052526 + (TTA)n Simple_repeat Simple_repeat 2 29 0 316 300 53 36 chr1 278141279 278141526 -4052138 + L1PB4 LINE L1 5713 5963 -193 * 2278 144 40 2 chr1 278141313 278141717 -4051947 + L1MB4 LINE L1 5741 6159 -21 2376 91 0 0 chr1 278141728 278142026 -4051638 - AluSx SINE Alu -14 298 1 232 281 146 0 chr1 278142892 278142974 -4050690 - MIR SINE MIR -56 206 113 207 93 23 47 chr1 278142975 278143018 -4050646 + (TTTTA)n Simple_repeat Simple_repeat 3 44 0 1311 164 0 5 chr1 278143021 278143228 -4050436 - AluJo SINE Alu -21 291 86 533 237 8 0 chr1 278143638 278143756 -4049908 - MER45A DNA AcHobo 0 178 60 1545 175 27 24 chr1 278143944 278144107 -4049557 - AluJo SINE Alu -14 298 132 2037 99 3 77 chr1 278144107 278144430 -4049234 - AluSx SINE Alu -13 299 1 1545 175 27 24 chr1 278144430 278144563 -4049101 - AluJo SINE Alu -180 132 1 593 323 28 12 chr1 278146152 278146403 -4047261 - MIR SINE MIR 0 262 8 2500 76 0 3 chr1 278146649 278146953 -4046711 - AluSc SINE Alu -6 303 1 2048 116 17 3 chr1 278147972 278148264 -4045400 + AluSq SINE Alu 5 300 -13 321 301 3 3 chr1 278148299 278148432 -4045232 + MIR SINE MIR 73 206 -2 2336 93 0 3 chr1 278149118 278149419 -4044245 - AluSc SINE Alu -7 302 3 2188 95 0 7 chr1 278150364 278150674 -4042990 + AluSq SINE Alu 1 308 0 802 288 124 28 chr1 278150909 278151098 -4042566 + L1M4c LINE L1 800 969 -5455 1880 148 47 7 chr1 278151098 278151395 -4042269 + AluJb SINE Alu 1 309 -3 802 288 124 28 chr1 278151395 278151674 -4041990 + L1M4c LINE L1 969 1220 -5204 1680 158 0 77 chr1 278151674 278152040 -4041624 - L1MA5 LINE L1 0 6300 5963 802 288 124 28 chr1 278152040 278152500 -4041164 + L1M4c LINE L1 1220 1984 -4440 862 269 83 32 chr1 278152699 278153265 -4040399 + L1M4c LINE L1 2042 2636 -3927 1815 104 4 4 chr1 278153270 278153511 -4040153 + AluSp SINE Alu 58 298 -15 1033 248 168 7 chr1 278153548 278153959 -4039705 + L1M4c LINE L1 2724 3200 -3182 2115 107 0 0 chr1 278154088 278154358 -4039306 - AluSg SINE Alu -14 296 27 222 62 0 0 chr1 278155588 278155620 -4038044 + (TG)n Simple_repeat Simple_repeat 1 32 0 296 327 49 19 chr1 278157348 278157553 -4036111 - MIR SINE MIR -20 242 32 * 866 285 0 0 chr1 278157522 278157736 -4035928 + MIR SINE MIR 28 241 -21 2359 96 3 13 chr1 278158589 278158902 -4034762 + AluSg SINE Alu 1 310 0 2522 50 10 0 chr1 278159204 278159501 -4034163 - AluSp SINE Alu -13 300 1 579 173 0 0 chr1 278160642 278160752 -4032912 + CT-rich Low_complexity Low_complexity 4 113 0 1630 154 35 56 chr1 278160763 278161082 -4032582 - AluJb SINE Alu 0 312 1 2321 92 3 0 chr1 278161286 278161580 -4032084 - AluSx SINE Alu -17 295 1 2064 119 3 0 chr1 278161735 278162020 -4031644 - AluSx SINE Alu -19 293 8 2006 130 13 10 chr1 278163022 278163322 -4030342 - AluSq SINE Alu -12 301 1 1159 240 87 45 chr1 278163577 278164002 -4029662 - LTR16A LTR ERVL -1 449 7 228 352 23 8 chr1 278164302 278164430 -4029234 + MIR3 SINE MIR 9 138 -70 219 69 0 0 chr1 278164532 278164561 -4029103 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2204 60 0 0 chr1 278164583 278164851 -4028813 - AluY SINE Alu -12 299 32 227 276 49 57 chr1 278165635 278165758 -4027906 - L2 LINE L2 -209 3063 2942 249 250 148 28 chr1 278165937 278166045 -4027619 - MER5A DNA MER1_type 0 189 69 455 193 0 9 chr1 278166919 278167033 -4026631 + CT-rich Low_complexity Low_complexity 2 114 0 216 0 0 0 chr1 278167927 278167951 -4025713 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1126 156 38 14 chr1 278170369 278170581 -4023083 + L1MA8 LINE L1 6075 6291 0 2144 96 3 20 chr1 278170589 278170906 -4022758 + AluSx SINE Alu 3 312 0 22 35 0 0 chr1 278170927 278170956 -4022708 + AT_rich Low_complexity Low_complexity 1 29 0 276 245 122 0 chr1 278171152 278171250 -4022414 + MIR SINE MIR 124 233 -29 245 275 46 37 chr1 278171363 278171472 -4022192 + MIR3 SINE MIR 3 112 -96 1818 117 59 21 chr1 278173426 278173716 -4019948 + AluSx SINE Alu 1 301 -11 234 329 0 0 chr1 278173899 278173975 -4019689 - L2 LINE L2 -13 3259 3184 2316 107 0 0 chr1 278174212 278174511 -4019153 - AluSg1 SINE Alu -9 300 2 248 200 0 0 chr1 278175106 278175156 -4018508 - MIR3 SINE MIR -3 205 156 2239 137 0 0 chr1 278175614 278175920 -4017744 + AluSx SINE Alu 1 306 -6 1736 130 130 3 chr1 278175928 278176236 -4017428 - MER7A DNA MER2_type -1 345 1 26 64 0 0 chr1 278176376 278176423 -4017241 + AT_rich Low_complexity Low_complexity 1 47 0 297 0 0 0 chr1 278176458 278176491 -4017173 + (GA)n Simple_repeat Simple_repeat 1 33 0 225 94 0 0 chr1 278176849 278176881 -4016783 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 1804 148 57 0 chr1 278177890 278178173 -4015491 + AluJb SINE Alu 1 299 -13 181 259 17 52 chr1 278178771 278178829 -4014835 - MIR SINE MIR -140 122 67 1899 158 22 12 chr1 278181101 278181423 -4012241 + MER1B DNA MER1_type 3 327 -12 396 0 0 0 chr1 278181624 278181668 -4011996 + (TG)n Simple_repeat Simple_repeat 1 44 0 565 228 94 0 chr1 278182997 278183146 -4010518 - MIR SINE MIR -37 225 63 1885 156 0 11 chr1 278183301 278183584 -4010080 + AluJo SINE Alu 3 282 -30 322 290 77 13 chr1 278186991 278187146 -4006518 + L2 LINE L2 2674 2838 -476 213 94 0 0 chr1 278187236 278187268 -4006396 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 246 239 67 90 chr1 278187413 278187547 -4006117 - L1ME2 LINE L1 -71 6093 5963 436 241 108 36 chr1 278187615 278187810 -4005854 - L1ME2 LINE L1 -219 5951 5743 268 233 58 0 chr1 278187816 278187919 -4005745 - L1ME2 LINE L1 -2189 3957 3849 1885 152 28 3 chr1 278187923 278188213 -4005451 - AluJb SINE Alu -15 297 1 221 297 0 0 chr1 278188255 278188319 -4005345 + L2 LINE L2 2995 3058 -214 1842 139 7 28 chr1 278188479 278188766 -4004898 + AluJb SINE Alu 9 289 -23 2018 116 0 33 chr1 278189278 278189581 -4004083 + AluSx SINE Alu 1 293 -19 1856 134 18 21 chr1 278189879 278190162 -4003502 - AluJo SINE Alu -30 282 1 407 231 110 28 chr1 278190163 278190345 -4003319 - L1ME2 LINE L1 -3046 3100 2904 981 153 13 0 chr1 278190349 278190499 -4003165 - AluJb SINE Alu -24 288 137 2119 126 7 10 chr1 278190499 278190809 -4002855 - AluSx SINE Alu -3 309 1 423 263 29 23 chr1 278190989 278191164 -4002500 + (CATA)n Simple_repeat Simple_repeat 3 178 0 307 358 23 0 chr1 278191085 278191291 -4002373 + (CA)n Simple_repeat Simple_repeat 1 210 0 * 494 265 6 28 chr1 278191298 278191479 -4002185 + (CATA)n Simple_repeat Simple_repeat 2 178 0 2376 11 15 11 chr1 278191620 278191889 -4001775 + AluYb8 SINE Alu 38 307 -11 510 261 34 17 chr1 278191893 278192069 -4001595 - MIR SINE MIR -6 256 78 357 294 35 21 chr1 278192286 278192429 -4001235 + L2 LINE L2 3169 3313 0 1904 167 7 0 chr1 278195606 278195911 -3997753 + AluJb SINE Alu 1 307 -5 327 280 233 5 chr1 278196089 278196282 -3997382 - MIR SINE MIR -6 256 20 669 289 53 8 chr1 278196304 278196550 -3997114 - MIR SINE MIR 0 262 6 21 0 0 0 chr1 278197424 278197445 -3996219 + AT_rich Low_complexity Low_complexity 1 21 0 29151 85 12 3 chr1 278198153 278203077 -3990587 - L1PA7 LINE L1 0 6154 1186 2158 84 7 0 chr1 278205026 278205301 -3988363 - AluSp SINE Alu -16 297 21 2700 43 0 0 chr1 278205303 278205606 -3988058 - AluY SINE Alu -8 303 1 1370 153 0 31 chr1 278205607 278205835 -3987829 - AluJo SINE Alu -18 294 74 299 165 279 0 chr1 278205959 278206038 -3987626 + AluJ/FLAM SINE Alu 1 101 -201 252 283 71 10 chr1 278206041 278206140 -3987524 - MIR SINE MIR -51 211 107 339 263 144 0 chr1 278206197 278206357 -3987307 + MIR SINE MIR 49 231 -31 22 0 0 0 chr1 278206681 278206703 -3986961 + AT_rich Low_complexity Low_complexity 1 22 0 298 173 0 0 chr1 278206891 278206943 -3986721 + L2 LINE L2 3242 3293 -20 1199 209 132 128 chr1 278208622 278209153 -3984511 - MLT1H LTR MaLR -14 535 3 249 360 14 36 chr1 278210095 278210234 -3983430 - MIR SINE MIR -40 222 87 524 268 37 32 chr1 278210335 278210525 -3983139 + MIR SINE MIR 72 262 0 2422 84 0 10 chr1 278212050 278212358 -3981306 + AluSq SINE Alu 1 305 -8 1635 190 10 10 chr1 278214023 278214323 -3979341 - AluJo SINE Alu -12 300 1 219 305 0 0 chr1 278214391 278214450 -3979214 + CT-rich Low_complexity Low_complexity 2 60 0 852 181 23 0 chr1 278215622 278215793 -3977871 - MER5A DNA MER1_type -14 175 1 432 0 0 0 chr1 278217324 278217372 -3976292 + (TG)n Simple_repeat Simple_repeat 1 48 0 270 0 0 0 chr1 278217371 278217401 -3976263 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1765 143 11 14 chr1 278217401 278217680 -3975984 - AluJo SINE Alu -34 278 1 2164 115 17 0 chr1 278218590 278218885 -3974779 + AluSx SINE Alu 1 300 -12 239 244 63 39 chr1 278219066 278219081 -3974583 - L1MA10 LINE L1 -2 6332 6318 1090 212 82 29 chr1 278219081 278219397 -3974267 - L1ME1 LINE L1 -5 6161 5829 2282 97 0 13 chr1 278219443 278219742 -3973922 - AluSg SINE Alu -15 295 1 2139 120 18 9 chr1 278221584 278221917 -3971747 - MER46B DNA MER2_type -25 211 1 1844 110 0 11 chr1 278222212 278222508 -3971156 - AluSx SINE Alu 0 317 25 228 277 0 0 chr1 278223190 278223237 -3970427 + polypurine Low_complexity Low_complexity 2 48 0 325 48 0 0 chr1 278224343 278224385 -3969279 - AluS SINE Alu -215 88 47 1582 88 13 35 chr1 278224385 278224611 -3969053 + AluSq SINE Alu 85 305 -8 2378 97 3 0 chr1 278224617 278224928 -3968736 + AluSx SINE Alu 1 312 0 1988 136 0 7 chr1 278225392 278225687 -3967977 - AluJb SINE Alu -19 293 1 730 230 0 17 chr1 278226008 278226182 -3967482 + MER5B DNA MER1_type 1 171 -7 347 322 87 0 chr1 278226244 278226427 -3967237 + MIR SINE MIR 50 248 -14 274 284 86 0 chr1 278227933 278228014 -3965650 + MIR SINE MIR 14 101 -161 219 88 0 0 chr1 278228014 278228048 -3965616 + (T)n Simple_repeat Simple_repeat 1 34 0 1480 246 22 51 chr1 278228054 278228529 -3965135 - L1ME1 LINE L1 -5 6161 5700 1828 129 136 0 chr1 278228529 278228846 -3964818 + MER46B DNA MER2_type 2 236 0 1480 246 22 51 chr1 278228846 278228877 -3964787 - L1ME1 LINE L1 -466 5700 5670 1017 148 119 19 chr1 278228879 278229188 -3964476 + MSTA LTR MaLR 3 428 0 3281 212 66 53 chr1 278229288 278230454 -3963210 - L1ME1 LINE L1 -535 5631 4460 2724 128 35 50 chr1 278230481 278231019 -3962645 - L1MA4A LINE L1 -1 6302 5773 3910 161 34 24 chr1 278231019 278232314 -3961350 - L1MA4A LINE L1 -460 6545 5238 * 5704 97 34 7 chr1 278232310 278233173 -3960491 + L1PA8 LINE L1 2810 3695 -2451 1582 107 12 41 chr1 278233177 278233420 -3960244 + AluSq SINE Alu 1 236 -77 10454 90 26 1 chr1 278233421 278235752 -3957912 + L1PA8 LINE L1 3797 6176 0 8673 206 58 17 chr1 278235752 278237611 -3956053 - L1MA4A LINE L1 -1603 5245 3239 2010 158 0 0 chr1 278237611 278237914 -3955750 + AluJb SINE Alu 1 303 -9 8673 206 58 17 chr1 278237914 278238689 -3954975 - L1MA4A LINE L1 -3609 3239 2498 5948 234 58 34 chr1 278238719 278238801 -3954863 - L1MEc LINE L1 -1666 4549 4470 1468 191 24 34 chr1 278238801 278239099 -3954565 - AluJo SINE Alu -17 295 1 5948 234 58 34 chr1 278239099 278239706 -3953958 - L1MEc LINE L1 -1745 4470 3879 1432 189 35 25 chr1 278239706 278239992 -3953672 - AluJo SINE Alu -23 289 1 5948 234 58 34 chr1 278239992 278241383 -3952281 - L1MEc LINE L1 -2336 3879 2418 10684 186 55 17 chr1 278241385 278241846 -3951818 - L1MA5 LINE L1 -4 7715 7273 207 0 0 0 chr1 278241846 278241869 -3951795 + (TG)n Simple_repeat Simple_repeat 2 24 0 10684 186 55 17 chr1 278241869 278245108 -3948556 - L1MA5 LINE L1 -446 7273 3724 198 0 0 0 chr1 278245108 278245130 -3948534 + (TC)n Simple_repeat Simple_repeat 2 23 0 10684 186 55 17 chr1 278245130 278247050 -3946614 - L1MA5 LINE L1 -3995 3724 1878 1216 78 0 6 chr1 278247408 278247575 -3946089 + AluY SINE Alu 145 310 -1 1945 237 77 6 chr1 278248009 278248663 -3945001 - L1MEc LINE L1 -3935 2461 1762 763 198 16 22 chr1 278248838 278249020 -3944644 + HAL1 LINE L1 1499 1679 -828 264 242 78 92 chr1 278249091 278249244 -3944420 + HAL1 LINE L1 2119 2269 -238 378 240 0 0 chr1 278249256 278249331 -3944333 - Charlie1a DNA MER1_type 0 1455 1381 488 247 34 28 chr1 278249363 278249541 -3944123 - HAL1 LINE L1 -475 2032 1854 615 139 100 39 chr1 278249568 278249748 -3943916 - Charlie1a DNA MER1_type -87 1368 1178 690 251 18 12 chr1 278249748 278249919 -3943745 - FRAM SINE Alu -4 172 1 3524 204 79 76 chr1 278249975 278250486 -3943178 - Charlie1a DNA MER1_type -1653 1108 600 713 215 0 15 chr1 278250486 278250621 -3943043 - FLAM_A SINE Alu 0 133 1 3524 204 79 76 chr1 278250621 278250923 -3942741 - Charlie1a DNA MER1_type -2161 600 289 1941 96 51 7 chr1 278250923 278251215 -3942449 + AluSc SINE Alu 1 305 -4 3524 204 79 76 chr1 278251215 278251505 -3942159 - Charlie1a DNA MER1_type -2472 289 1 309 269 217 63 chr1 278251527 278251702 -3941962 + HAL1 LINE L1 2301 2502 -5 2138 112 3 0 chr1 278252016 278252311 -3941353 + AluSq SINE Alu 1 296 -17 950 177 41 32 chr1 278253687 278253907 -3939757 - AluJo SINE Alu -7 305 84 2124 125 0 0 chr1 278253943 278254256 -3939408 + AluSq SINE Alu 1 313 0 406 191 0 127 chr1 278255015 278255141 -3938523 + L1MA7 LINE L1 6017 6126 -165 1800 107 0 0 chr1 278255149 278255393 -3938271 - AluSx SINE Alu -7 305 62 688 219 39 7 chr1 278256815 278256970 -3936694 + AluJo SINE Alu 122 281 -31 508 233 95 0 chr1 278256994 278257110 -3936554 + MIR SINE MIR 136 262 0 215 329 129 0 chr1 278257348 278257433 -3936231 - MIR SINE MIR -97 111 16 327 176 20 10 chr1 278258359 278258461 -3935203 + (TA)n Simple_repeat Simple_repeat 1 103 0 31 58 0 0 chr1 278258481 278258533 -3935131 + AT_rich Low_complexity Low_complexity 1 52 0 2294 88 3 0 chr1 278258541 278258849 -3934815 + AluSp SINE Alu 1 309 -4 243 0 0 0 chr1 278258849 278258876 -3934788 + (CA)n Simple_repeat Simple_repeat 2 28 0 422 234 0 105 chr1 278258935 278259059 -3934605 - MIR SINE MIR -73 189 79 4260 162 28 22 chr1 278259059 278259800 -3933864 + L1MB3 LINE L1 5363 6111 -72 1625 121 0 4 chr1 278259800 278260031 -3933633 + MER30 DNA MER1_type 1 230 0 4260 162 28 22 chr1 278260031 278260105 -3933559 + L1MB3 LINE L1 6111 6183 0 186 103 0 0 chr1 278260434 278260463 -3933201 + (T)n Simple_repeat Simple_repeat 1 29 0 383 242 45 30 chr1 278260707 278260839 -3932825 + MIR3 SINE MIR 6 139 -69 2271 90 0 0 chr1 278261422 278261721 -3931943 - AluSx SINE Alu -13 299 1 24 67 0 0 chr1 278261757 278261802 -3931862 + AT_rich Low_complexity Low_complexity 1 45 0 330 323 114 12 chr1 278262428 278262595 -3931069 - MIR SINE MIR -6 256 73 230 161 0 18 chr1 278263741 278263797 -3929867 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 325 70 53 0 chr1 278263797 278263844 -3929820 + MLT1C LTR MaLR 62 111 -356 426 164 0 0 chr1 278263844 278263917 -3929747 + MADE1 DNA Mariner 1 73 -7 863 213 171 58 chr1 278263923 278264196 -3929468 + MLT1C LTR MaLR 102 343 -124 1691 93 4 0 chr1 278264196 278264422 -3929242 + AluSx SINE Alu 1 227 -85 2276 100 0 0 chr1 278264422 278264731 -3928933 + AluSx SINE Alu 1 309 -3 863 213 171 58 chr1 278264731 278264784 -3928880 + MLT1C LTR MaLR 342 466 -1 612 206 8 32 chr1 278264907 278265033 -3928631 - MER5B DNA MER1_type -55 123 1 2080 161 107 64 chr1 278265692 278266033 -3927631 - MLT1D LTR MaLR 0 505 135 2013 114 35 0 chr1 278266033 278266322 -3927342 + AluSx SINE Alu 1 299 -13 2080 161 107 64 chr1 278266322 278266464 -3927200 - MLT1D LTR MaLR -370 135 1 396 0 0 0 chr1 278267271 278267315 -3926349 + (TA)n Simple_repeat Simple_repeat 2 45 0 1732 143 19 13 chr1 278267321 278267629 -3926035 - AluJo SINE Alu 0 312 3 279 283 33 11 chr1 278268336 278268428 -3925236 + MIR3 SINE MIR 104 197 -11 184 316 213 29 chr1 278268447 278268583 -3925081 - MIR SINE MIR -70 192 32 1420 132 5 5 chr1 278268833 278269052 -3924612 + L1PA15 LINE L1 5947 6165 0 1890 169 56 0 chr1 278269066 278269385 -3924279 - MER1B DNA MER1_type 0 337 1 284 258 0 0 chr1 278270516 278270578 -3923086 + L2 LINE L2 3248 3309 -4 282 54 0 0 chr1 278270995 278271032 -3922632 + MADE1 DNA Mariner 1 37 -43 1316 184 90 4 chr1 278271850 278272127 -3921537 - AluJo SINE Alu -11 301 1 513 292 35 0 chr1 278273411 278273555 -3920109 + MIR SINE MIR 56 204 -58 3874 171 84 24 chr1 278274413 278274982 -3918682 - L1MB7 LINE L1 0 6184 5651 2426 65 3 0 chr1 278274982 278275292 -3918372 - AluY SINE Alu 0 311 1 3874 171 84 24 chr1 278275292 278275738 -3917926 - L1MB7 LINE L1 -533 5651 5108 307 252 57 0 chr1 278275741 278275864 -3917800 - MER69 DNA AcHobo -234 2292 2163 253 187 0 93 chr1 278276069 278276144 -3917520 - AluJ/FRAM SINE Alu -10 292 225 277 47 47 0 chr1 278276268 278276311 -3917353 - MADE1 DNA Mariner -35 45 1 285 291 73 0 chr1 278276340 278276450 -3917214 + L1ME4a LINE L1 5783 5900 -221 387 261 72 36 chr1 278276973 278277111 -3916553 + MIR SINE MIR 61 203 -59 285 299 21 0 chr1 278277331 278277428 -3916236 + MLT1J2 LTR MaLR 15 113 -337 294 98 0 0 chr1 278277432 278277483 -3916181 + (TC)n Simple_repeat Simple_repeat 2 52 0 1553 139 3 61 chr1 278277498 278277792 -3915872 - AluJb SINE Alu -34 278 2 714 271 88 46 chr1 278277795 278278057 -3915607 + MLT1J2 LTR MaLR 108 380 -70 372 351 161 0 chr1 278278745 278278919 -3914745 - MIR SINE MIR -19 243 42 2268 93 3 0 chr1 278280092 278280394 -3913270 - AluY SINE Alu -7 304 2 191 182 0 143 chr1 278280757 278280834 -3912830 + MIR SINE MIR 57 122 -86 181 292 123 0 chr1 278281556 278281621 -3912043 - MIR SINE MIR -116 92 20 2100 84 20 3 chr1 278281926 278282223 -3911441 + AluSc SINE Alu 1 302 -7 187 384 71 0 chr1 278282455 278282567 -3911097 - L2 LINE L2 -7 3265 3146 2112 128 3 0 chr1 278283150 278283456 -3910208 + AluSx SINE Alu 1 307 -5 529 99 0 0 chr1 278283876 278283947 -3909717 + AluS SINE Alu 5 75 -238 2132 79 0 36 chr1 278284094 278284399 -3909265 - AluSc SINE Alu -15 294 1 1731 133 60 7 chr1 278285631 278285916 -3907748 - AluSx SINE Alu -12 300 1 680 272 24 28 chr1 278286003 278286216 -3907448 + MIR SINE MIR 51 262 0 2096 130 0 0 chr1 278286475 278286783 -3906881 + AluSx SINE Alu 3 310 -2 579 168 8 42 chr1 278286800 278286919 -3906745 + AluJb SINE Alu 2 116 -196 516 84 0 32 chr1 278286919 278287014 -3906650 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 2148 108 0 3 chr1 278287326 278287633 -3906031 + AluSx SINE Alu 1 306 -6 1762 79 0 0 chr1 278288100 278288354 -3905310 - AluY SINE Alu 0 307 54 1649 156 42 0 chr1 278288441 278288729 -3904935 + AluJb SINE Alu 1 300 -12 501 242 19 69 chr1 278288977 278289137 -3904527 + L1MA10 LINE L1 6014 6288 0 1268 283 43 21 chr1 278289354 278290001 -3903663 + L2 LINE L2 2644 3313 0 2194 101 0 3 chr1 278290066 278290372 -3903292 - AluSx SINE Alu -7 305 1 428 264 26 32 chr1 278290508 278290663 -3903001 + MER5A DNA MER1_type 4 157 -32 1467 150 0 0 chr1 278291021 278291248 -3902416 - AluJb SINE Alu -1 311 85 875 161 35 0 chr1 278291252 278291395 -3902269 + MER20 DNA MER1_type 19 166 -53 2182 96 0 13 chr1 278291421 278291734 -3901930 + AluSx SINE Alu 1 309 -3 209 98 24 0 chr1 278293768 278293809 -3899855 + (CA)n Simple_repeat Simple_repeat 2 43 0 1841 160 0 0 chr1 278294082 278294369 -3899295 + AluSx SINE Alu 1 287 -25 189 0 0 0 chr1 278294374 278294395 -3899269 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 244 293 182 10 chr1 278294721 278294820 -3898844 - L2 LINE L2 -1 3312 3197 525 285 54 21 chr1 278294905 278295091 -3898573 + MIR SINE MIR 21 212 -50 24 32 0 0 chr1 278296577 278296608 -3897056 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr1 278297066 278297086 -3896578 + (T)n Simple_repeat Simple_repeat 1 20 0 962 254 121 29 chr1 278297481 278297926 -3895738 - L2 LINE L2 0 3313 2828 1877 174 36 17 chr1 278297929 278298285 -3895379 + MLT1A1 LTR MaLR 2 364 -1 2417 292 171 50 chr1 278298289 278299033 -3894631 - L2 LINE L2 -1035 2279 1626 1534 173 29 29 chr1 278299033 278299345 -3894319 + AluJo SINE Alu 1 312 0 2417 292 171 50 chr1 278299345 278300362 -3893302 - L2 LINE L2 -1688 1626 241 2466 119 28 40 chr1 278300362 278300404 -3893260 - MSTA LTR MaLR 0 428 387 2146 102 0 37 chr1 278300404 278300726 -3892938 + AluSg SINE Alu 1 310 0 2466 119 28 40 chr1 278300726 278301112 -3892552 - MSTA LTR MaLR -41 387 5 2417 292 171 50 chr1 278301112 278301365 -3892299 - L2 LINE L2 -3073 241 20 1186 53 0 0 chr1 278302124 278302274 -3891390 - AluY SINE Alu -3 308 159 402 239 15 0 chr1 278302397 278302600 -3891064 + GA-rich Low_complexity Low_complexity 1 206 0 2241 91 3 0 chr1 278303541 278303839 -3889825 - AluSx SINE Alu -12 300 2 216 0 0 0 chr1 278304072 278304096 -3889568 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1762 167 3 6 chr1 278305024 278305336 -3888328 + AluJb SINE Alu 2 312 0 498 294 84 60 chr1 278305646 278306078 -3887586 + L2 LINE L2 2515 3313 0 1993 169 3 12 chr1 278306169 278306513 -3887151 - MER2 DNA MER2_type -3 341 1 246 116 232 0 chr1 278306967 278307036 -3886628 + L1MB7 LINE L1 6083 6167 -17 2124 89 10 7 chr1 278307367 278307660 -3886004 + AluSg SINE Alu 1 294 -16 981 225 28 9 chr1 278308171 278308389 -3885275 - MER58A DNA MER1_type -2 222 1 243 250 62 0 chr1 278308970 278309050 -3884614 - L2 LINE L2 0 3313 3229 342 0 0 0 chr1 278309088 278309126 -3884538 + (CA)n Simple_repeat Simple_repeat 1 38 0 1829 127 7 34 chr1 278309163 278309510 -3884154 + AluSx SINE Alu 1 339 0 514 328 29 7 chr1 278311676 278311884 -3881780 + MIR SINE MIR 32 243 -19 2187 91 0 3 chr1 278312633 278312929 -3880735 - AluSx SINE Alu -17 295 1 2677 150 20 26 chr1 278313020 278313521 -3880143 - L1MB3 LINE L1 -10 6173 5676 1962 141 3 0 chr1 278314494 278314800 -3878864 - AluSx SINE Alu -5 307 1 435 287 36 0 chr1 278315803 278315970 -3877694 + C-rich Low_complexity Low_complexity 4 176 0 1309 181 0 0 chr1 278316092 278316318 -3877346 + AluSx SINE Alu 61 286 -26 1345 181 90 4 chr1 278316720 278316997 -3876667 + AluJo SINE Alu 1 301 -11 584 228 2 34 chr1 278319577 278319760 -3873904 + MER69 DNA AcHobo 1 2518 -8 209 299 37 65 chr1 278319903 278320010 -3873654 + MIR3 SINE MIR 99 202 -6 2169 92 10 0 chr1 278321075 278321378 -3872286 - AluSp SINE Alu -7 306 1 383 156 26 13 chr1 278321510 278321587 -3872077 - MER116 DNA Mariner -2 78 1 2383 90 0 0 chr1 278321685 278321997 -3871667 - AluSx SINE Alu 0 312 1 220 238 47 64 chr1 278322614 278322786 -3870878 + C-rich Low_complexity Low_complexity 4 172 0 201 256 6 57 chr1 278322725 278322901 -3870763 + (CACCC)n Simple_repeat Simple_repeat 4 170 0 * 203 219 24 0 chr1 278323019 278323060 -3870604 + L2 LINE L2 3229 3270 -2 184 328 90 16 chr1 278323462 278323584 -3870080 + MIR SINE MIR 105 235 -27 2402 59 35 74 chr1 278324410 278324870 -3868794 - L1PA8 LINE L1 -2 6170 5729 871 167 33 6 chr1 278325567 278325747 -3867917 + L1MC2 LINE L1 5895 6079 -265 1960 141 3 3 chr1 278325850 278326162 -3867502 + AluSx SINE Alu 1 312 0 1247 165 37 8 chr1 278326274 278326516 -3867148 + L1MC2 LINE L1 6083 6331 -13 236 340 13 58 chr1 278326646 278326802 -3866862 + MIR SINE MIR 64 212 -50 206 241 126 103 chr1 278329559 278329646 -3864018 - MIR3 SINE MIR -6 202 114 2017 88 53 7 chr1 278330404 278330687 -3862977 + AluSq SINE Alu 1 296 -17 253 122 102 0 chr1 278330892 278330941 -3862723 - L1MB4 LINE L1 -1 6179 6126 962 185 9 24 chr1 278330951 278331089 -3862575 - AluJb SINE Alu -45 267 132 2156 97 37 0 chr1 278331089 278331388 -3862276 - AluSx SINE Alu -2 310 1 962 185 9 24 chr1 278331388 278331460 -3862204 - AluJb SINE Alu -180 132 60 821 152 14 0 chr1 278331461 278331599 -3862065 - L1MB3 LINE L1 -38 6145 6006 2416 65 3 0 chr1 278331621 278331929 -3861735 - AluSp SINE Alu -4 309 1 2177 96 0 13 chr1 278332349 278332662 -3861002 - AluSx SINE Alu -3 309 1 2170 67 3 3 chr1 278333639 278333948 -3859716 - AluSc SINE Alu 0 309 1 366 251 47 77 chr1 278334042 278334231 -3859433 + MIR3 SINE MIR 10 188 -60 21 0 0 0 chr1 278334516 278334537 -3859127 + AT_rich Low_complexity Low_complexity 1 21 0 2123 104 10 0 chr1 278334879 278335177 -3858487 - AluSx SINE Alu -11 301 1 1024 138 6 0 chr1 278335186 278335372 -3858292 - FRAM SINE Alu 0 176 1 290 265 308 0 chr1 278336296 278336413 -3857251 + MIR SINE MIR 71 223 -39 381 101 0 101 chr1 278336600 278336679 -3856985 - MLT2B1 LTR ERVL 0 520 450 255 181 53 0 chr1 278336684 278336778 -3856886 + (TA)n Simple_repeat Simple_repeat 1 99 0 379 133 0 53 chr1 278336830 278336905 -3856759 - MLT2B1 LTR ERVL 0 520 450 244 156 73 0 chr1 278336906 278337002 -3856662 + (TA)n Simple_repeat Simple_repeat 1 103 0 312 172 0 17 chr1 278337057 278337115 -3856549 - MLT2A2 LTR ERVL 0 453 397 1113 227 147 46 chr1 278337176 278337612 -3856052 - MLT2B1 LTR ERVL -40 480 1 908 163 4 75 chr1 278338081 278338308 -3855356 - AluJo SINE Alu -16 296 86 1755 43 0 0 chr1 278338884 278339095 -3854569 + AluY SINE Alu 87 297 -14 4004 164 79 20 chr1 278340299 278340868 -3852796 - L1MB7 LINE L1 0 6184 5650 2426 65 3 0 chr1 278340868 278341178 -3852486 - AluY SINE Alu 0 311 1 4004 164 79 20 chr1 278341178 278341628 -3852036 - L1MB7 LINE L1 -534 5650 5107 592 164 17 0 chr1 278341631 278341747 -3851917 - MER69 DNA AcHobo -246 2280 2163 434 283 254 6 chr1 278341776 278341953 -3851711 - MER69 DNA AcHobo -1962 564 344 372 215 23 23 chr1 278341950 278342078 -3851586 - FRAM SINE Alu -39 127 69 * 378 74 0 0 chr1 278342105 278342159 -3851505 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 213 175 0 0 chr1 278342159 278342199 -3851465 + (CAGA)n Simple_repeat Simple_repeat 1 40 0 210 189 0 0 chr1 278343300 278343337 -3850327 - MIR3 SINE MIR -17 191 155 2276 14 0 14 chr1 278343337 278343615 -3850049 + AluY SINE Alu 1 274 -37 342 353 0 25 chr1 278343730 278343852 -3849812 - MIR3 SINE MIR -49 159 41 2297 97 0 0 chr1 278343900 278344208 -3849456 - AluSg SINE Alu -1 309 2 2277 94 3 10 chr1 278345787 278346086 -3847578 + AluSx SINE Alu 1 297 -15 2419 103 0 0 chr1 278346089 278346399 -3847265 + AluSx SINE Alu 1 310 -2 327 269 54 23 chr1 278347218 278347348 -3846316 + MIR SINE MIR 61 194 -68 198 0 0 0 chr1 278347574 278347596 -3846068 + (A)n Simple_repeat Simple_repeat 1 22 0 1749 174 90 45 chr1 278348252 278348654 -3845010 - L1MB3 LINE L1 -20 6163 5744 2265 95 0 0 chr1 278348730 278349042 -3844622 + AluSx SINE Alu 1 312 0 213 308 111 34 chr1 278349121 278349238 -3844426 + L2 LINE L2 3147 3272 0 523 258 33 15 chr1 278349412 278349562 -3844102 + MIR SINE MIR 10 164 -95 2369 102 0 0 chr1 278349562 278349857 -3843807 - AluSx SINE Alu -17 295 1 523 258 33 15 chr1 278349857 278349886 -3843778 + MIR SINE MIR 164 191 -68 245 325 0 25 chr1 278350865 278350945 -3842719 - L2 LINE L2 -16 3256 3179 2279 98 0 10 chr1 278351955 278352252 -3841412 + AluSx SINE Alu 1 294 -18 2391 103 3 0 chr1 278353040 278353352 -3840312 + AluSp SINE Alu 1 313 0 204 40 0 0 chr1 278353786 278353811 -3839853 + (CA)n Simple_repeat Simple_repeat 2 26 0 212 295 86 19 chr1 278354819 278354924 -3838740 + L2 LINE L2 2646 2757 -557 2183 219 87 8 chr1 278355603 278356110 -3837554 + MLT1H LTR MaLR 3 549 0 3910 89 45 0 chr1 278356119 278356648 -3837016 + MER41A LTR ERV1 2 554 0 306 0 0 0 chr1 278356707 278356741 -3836923 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 288 314 131 7 chr1 278356741 278356878 -3836786 - L2 LINE L2 -13 3259 3106 2288 95 3 7 chr1 278359093 278359399 -3834265 + AluSp SINE Alu 1 305 -8 2241 115 0 3 chr1 278359776 278360072 -3833592 - AluSx SINE Alu -17 295 1 1930 148 0 23 chr1 278360338 278360641 -3833023 - AluSx SINE Alu -12 300 5 1235 138 16 0 chr1 278360870 278361059 -3832605 - AluJo SINE Alu 0 312 121 659 61 0 0 chr1 278361144 278361226 -3832438 - AluJ/FLAM SINE Alu -219 93 12 705 212 69 108 chr1 278361430 278361830 -3831834 + MLT1H LTR MaLR 1 468 -74 2343 93 3 3 chr1 278361830 278362141 -3831523 - AluSp SINE Alu -2 311 1 705 212 69 108 chr1 278362141 278362212 -3831452 + MLT1H LTR MaLR 468 540 -2 345 267 152 54 chr1 278362273 278362569 -3831095 + L1MEd LINE L1 571 895 -5477 2125 114 0 0 chr1 278362918 278363207 -3830457 + AluSg SINE Alu 7 295 -15 2983 125 42 4 chr1 278364174 278364653 -3829011 - LTR9B LTR ERV1 -87 557 61 2844 16 0 0 chr1 278364653 278364974 -3828690 - L1PA2 LINE L1 -1411 4735 4415 8032 12 1 0 chr1 278364974 278366388 -3827276 + L1PA2 LINE L1 4740 6155 0 536 24 0 96 chr1 278366388 278366441 -3827223 - LTR9B LTR ERV1 -569 75 31 2355 66 3 60 chr1 278366441 278366760 -3826904 - AluY SINE Alu -10 301 1 536 24 0 96 chr1 278366760 278366789 -3826875 - LTR9B LTR ERV1 -613 31 1 642 169 40 16 chr1 278366790 278366914 -3826750 - HUERS-P3b LTR ERV1 -7 7411 7285 270 49 73 0 chr1 278366906 278366947 -3826717 + HUERS-P3 LTR ERV1 6101 6144 -1274 * 462 130 3 42 chr1 278366945 278367036 -3826628 + HUERS-P3 LTR ERV1 7221 8780 -119 1908 174 0 6 chr1 278367385 278367696 -3825968 + AluJo SINE Alu 3 311 -1 254 290 150 0 chr1 278368123 278368223 -3825441 - MIR3 SINE MIR -41 167 53 1444 237 26 37 chr1 278369734 278370114 -3823550 - MLT1C LTR MaLR -12 455 80 1307 276 69 34 chr1 278370117 278370642 -3823022 + L1M3d LINE L1 2 513 -5378 2005 123 42 3 chr1 278370646 278370930 -3822734 - AluSq SINE Alu -18 295 1 1185 249 77 12 chr1 278370931 278371345 -3822319 + L1MEd LINE L1 1459 1899 -4485 4142 57 3 7 chr1 278371349 278372192 -3821472 + L1P3 LINE L1 4843 5681 -473 4713 44 3 9 chr1 278372192 278372762 -3820902 + L1PA7 LINE L1 5585 6153 -1 1567 242 44 42 chr1 278372773 278373548 -3820116 + L1MEd LINE L1 2001 2772 -3610 2121 123 3 13 chr1 278373548 278373858 -3819806 - AluSx SINE Alu -5 307 1 1567 242 44 42 chr1 278373858 278373973 -3819691 + L1MEd LINE L1 2772 2885 -3497 2189 187 24 24 chr1 278374073 278374565 -3819099 + L1MEd LINE L1 3768 4259 -2123 4077 185 26 22 chr1 278374630 278375647 -3818017 + L1P2 LINE L1 4735 5760 -630 250 224 118 0 chr1 278375805 278375890 -3817774 - MLT1C LTR MaLR -372 95 1 406 180 214 0 chr1 278375947 278376036 -3817628 - MER81 DNA DNA -6 108 1 423 0 0 0 chr1 278376327 278376374 -3817290 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1991 110 11 11 chr1 278376376 278376657 -3817007 - AluY SINE Alu -30 281 1 744 240 0 0 chr1 278376665 278376819 -3816845 - FRAM SINE Alu -12 154 1 504 0 0 0 chr1 278377160 278377216 -3816448 + (TG)n Simple_repeat Simple_repeat 1 56 0 182 290 174 0 chr1 278377977 278378046 -3815618 - MIR SINE MIR -118 144 64 2270 114 3 0 chr1 278378047 278378355 -3815309 + AluSg1 SINE Alu 1 309 0 1016 267 89 40 chr1 278378403 278378944 -3814720 - L1ME LINE L1 -495 5667 5065 1703 156 0 65 chr1 278378944 278379265 -3814399 + AluJb SINE Alu 1 300 -12 1016 267 89 40 chr1 278379265 278379613 -3814051 - L1ME LINE L1 -1097 5065 4736 2516 62 0 10 chr1 278379629 278379935 -3813729 - AluY SINE Alu -8 303 1 2286 94 3 0 chr1 278379942 278380240 -3813424 - AluY SINE Alu -12 299 1 218 300 0 0 chr1 278381836 278381896 -3811768 - MIR SINE MIR 0 262 203 2250 112 0 3 chr1 278382098 278382410 -3811254 + AluSp SINE Alu 1 311 -2 1869 171 7 0 chr1 278382969 278383273 -3810391 + AluJo SINE Alu 1 306 -6 645 165 0 0 chr1 278383274 278383395 -3810269 + GA-rich Low_complexity Low_complexity 1 121 0 2260 78 57 0 chr1 278383419 278383715 -3809949 + AluSp SINE Alu 1 313 0 677 147 7 20 chr1 278383717 278383867 -3809797 + GA-rich Low_complexity Low_complexity 4 151 0 1860 172 0 10 chr1 278384892 278385200 -3808464 - AluJb SINE Alu -7 305 1 2230 109 3 3 chr1 278386817 278387111 -3806553 - AluSx SINE Alu -18 294 1 5096 139 63 13 chr1 278387425 278388285 -3805379 - MER4D LTR ERV1 0 903 1 282 165 76 76 chr1 278388399 278388478 -3805186 + MIR3 SINE MIR 114 192 -16 291 260 14 0 chr1 278388663 278388736 -3804928 - MIR SINE MIR -121 141 68 1798 188 75 13 chr1 278389543 278389916 -3803748 - MSTD LTR MaLR 0 396 1 2601 55 0 3 chr1 278390741 278391050 -3802614 + AluY SINE Alu 1 308 -3 1368 285 100 65 chr1 278391108 278391542 -3802122 + L1M4 LINE L1 3431 3849 -2297 2349 97 3 7 chr1 278391542 278391851 -3801813 + AluSx SINE Alu 1 308 -4 1368 285 100 65 chr1 278391851 278392545 -3801119 + L1M4 LINE L1 3849 4518 -1628 1887 137 32 45 chr1 278392545 278392859 -3800805 - AluJb SINE Alu -2 310 1 1368 285 100 65 chr1 278392859 278393474 -3800190 + L1M4 LINE L1 4518 5248 -898 3012 173 48 9 chr1 278393474 278394013 -3799651 + MER68 LTR ERV1 2 561 -1 1368 285 100 65 chr1 278394013 278394174 -3799490 + L1M4 LINE L1 5248 5402 -744 25 51 0 0 chr1 278394817 278394856 -3798808 + AT_rich Low_complexity Low_complexity 1 39 0 1989 117 39 0 chr1 278395072 278395355 -3798309 + AluSx SINE Alu 9 302 -10 1917 126 51 10 chr1 278395446 278395739 -3797925 + AluY SINE Alu 1 305 -6 2092 130 0 23 chr1 278397368 278397676 -3795988 - AluSx SINE Alu -11 301 1 22 0 0 0 chr1 278397676 278397698 -3795966 + AT_rich Low_complexity Low_complexity 1 22 0 771 83 0 0 chr1 278397860 278397981 -3795683 + (TG)n Simple_repeat Simple_repeat 2 122 0 2312 96 3 37 chr1 278398728 278398907 -3794757 - AluSx SINE Alu 0 312 147 2317 92 14 0 chr1 278398907 278399202 -3794462 - AluSg1 SINE Alu -9 300 2 2312 96 3 37 chr1 278399202 278399345 -3794319 - AluSx SINE Alu -165 147 1 480 48 0 0 chr1 278400061 278400124 -3793540 + (TG)n Simple_repeat Simple_repeat 2 64 0 1813 162 3 55 chr1 278400605 278400932 -3792732 + AluJo SINE Alu 1 310 -2 1468 127 0 19 chr1 278400976 278401188 -3792476 - AluSg/x SINE Alu 0 310 103 399 251 29 34 chr1 278401190 278401365 -3792299 + L1ME3 LINE L1 5087 5260 -886 363 167 0 0 chr1 278401365 278401431 -3792233 + (TG)n Simple_repeat Simple_repeat 2 67 0 887 289 105 34 chr1 278401431 278401911 -3791753 + L1ME3 LINE L1 5266 5796 -366 2274 86 0 0 chr1 278401911 278402210 -3791454 + AluSg SINE Alu 1 299 0 887 289 105 34 chr1 278402210 278402310 -3791354 + L1ME3 LINE L1 5796 5888 -274 645 129 0 0 chr1 278402630 278402723 -3790941 - FLAM_C SINE Alu -25 118 26 2042 104 47 0 chr1 278404685 278404963 -3788701 - AluSx SINE Alu -21 291 1 2064 113 30 13 chr1 278405065 278405366 -3788298 + AluSx SINE Alu 5 310 -2 649 195 108 72 chr1 278405868 278405972 -3787692 + MER5C DNA MER1_type 38 137 -187 2354 98 7 3 chr1 278405972 278406278 -3787386 - AluSq SINE Alu -6 307 1 649 195 108 72 chr1 278406278 278406450 -3787214 + MER5C DNA MER1_type 137 324 0 2043 118 17 20 chr1 278406510 278406806 -3786858 - AluSq SINE Alu -18 295 1 1978 159 0 13 chr1 278406817 278407118 -3786546 - AluJo SINE Alu -15 297 1 228 324 0 0 chr1 278407689 278407757 -3785907 + GA-rich Low_complexity Low_complexity 3 70 0 434 243 99 9 chr1 278407853 278407964 -3785700 + MIR3 SINE MIR 46 166 -42 373 274 94 0 chr1 278407968 278408074 -3785590 - L2 LINE L2 0 3313 3198 640 288 38 19 chr1 278408366 278408578 -3785086 - MIR SINE MIR -2 260 45 2179 109 0 0 chr1 278408646 278408930 -3784734 + AluSg SINE Alu 16 299 -11 219 176 0 59 chr1 278409165 278409250 -3784414 + CT-rich Low_complexity Low_complexity 1 80 0 1555 190 30 13 chr1 278409251 278409551 -3784113 - AluJo SINE Alu -7 305 1 2391 105 0 6 chr1 278409869 278410183 -3783481 - AluSx SINE Alu 0 312 1 212 318 8 71 chr1 278410262 278410388 -3783276 - MIR SINE MIR -35 227 110 366 247 171 25 chr1 278410513 278410671 -3782993 - MER5A DNA MER1_type 0 189 9 340 296 113 7 chr1 278461020 278461162 -3732502 + MIR SINE MIR 27 183 -79 378 319 43 9 chr1 278462186 278462302 -3731362 + L2 LINE L2 3153 3272 0 387 60 0 0 chr1 278462317 278462367 -3731297 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 1848 128 14 17 chr1 278462387 278462683 -3730981 + AluSx SINE Alu 1 295 -17 2031 129 10 0 chr1 278462943 278463252 -3730412 - AluJb SINE Alu 0 312 1 223 136 0 45 chr1 278463450 278463494 -3730170 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 268 282 26 13 chr1 278463558 278463636 -3730028 - L2 LINE L2 -89 3183 3105 918 161 4 135 chr1 278463726 278463792 -3729872 + AluJo SINE Alu 51 124 -188 2068 120 3 7 chr1 278463792 278464091 -3729573 - AluSx SINE Alu -14 298 1 918 161 4 135 chr1 278464091 278464291 -3729373 + AluJo SINE Alu 124 282 -30 221 0 35 0 chr1 278464294 278464323 -3729341 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 274 191 118 15 chr1 278464324 278464392 -3729272 - L2 LINE L2 -206 3066 2992 2087 103 7 7 chr1 278464957 278465257 -3728407 - AluSx SINE Alu -12 300 1 1974 115 14 0 chr1 278465322 278465618 -3728046 - AluSq SINE Alu -7 306 7 1973 187 14 8 chr1 278466041 278466404 -3727260 + MLT1A1 LTR MaLR 1 365 0 315 0 0 0 chr1 278467522 278467557 -3726107 + (CA)n Simple_repeat Simple_repeat 1 35 0 249 381 23 11 chr1 278468748 278468924 -3724740 - MIR3 SINE MIR -11 197 20 252 206 29 15 chr1 278468982 278469050 -3724614 + CT-rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr1 278469903 278469924 -3723740 + AT_rich Low_complexity Low_complexity 1 21 0 417 109 0 0 chr1 278470581 278470645 -3723019 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 370 264 100 14 chr1 278470724 278470864 -3722800 - MIR SINE MIR -71 191 40 712 340 72 32 chr1 278470946 278471815 -3721849 + L2 LINE L2 1801 2704 -610 2045 69 8 0 chr1 278471922 278472184 -3721480 - AluSx SINE Alu -48 264 1 297 328 104 23 chr1 278472184 278472443 -3721221 + L2 LINE L2 2690 2969 -345 291 250 89 73 chr1 278472463 278472587 -3721077 + L2 LINE L2 3136 3261 -11 1246 275 135 43 chr1 278472591 278473533 -3720131 + L1M4 LINE L1 3715 4804 -1342 1876 136 0 0 chr1 278473533 278473806 -3719858 + AluSx SINE Alu 1 273 -39 1246 275 135 43 chr1 278473806 278474126 -3719538 + L1M4 LINE L1 4804 5093 -1053 2293 69 0 0 chr1 278474311 278474599 -3719065 + AluSg SINE Alu 21 308 -2 628 180 0 136 chr1 278474972 278475178 -3718486 - AluSq SINE Alu 0 313 136 579 311 122 16 chr1 278475178 278475612 -3718052 + L2 LINE L2 1805 2284 -1030 1475 180 80 96 chr1 278475615 278476053 -3717611 - LTR40c LTR ERVL 0 465 35 28 0 0 0 chr1 278476112 278476140 -3717524 + AT_rich Low_complexity Low_complexity 1 28 0 1713 157 0 10 chr1 278476155 278476449 -3717215 - AluJo SINE Alu -21 291 1 359 301 22 0 chr1 278476733 278476869 -3716795 - FAM SINE Alu -12 163 25 408 94 31 0 chr1 278477200 278477264 -3716400 + Alu SINE Alu 232 297 -14 563 229 0 8 chr1 278477264 278477382 -3716282 - AluJb SINE Alu -194 118 2 223 350 0 0 chr1 278478380 278478540 -3715124 + (TCTCG)n Simple_repeat Simple_repeat 5 164 0 570 278 0 0 chr1 278478987 278479167 -3714497 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 448 282 0 11 chr1 278479199 278479380 -3714284 + (TCCG)n Simple_repeat Simple_repeat 2 180 0 * 488 278 0 6 chr1 278479353 278479526 -3714138 + (TCCA)n Simple_repeat Simple_repeat 1 172 0 23 0 0 0 chr1 278480127 278480150 -3713514 + AT_rich Low_complexity Low_complexity 1 23 0 541 278 12 35 chr1 278481282 278481451 -3712213 - MIR SINE MIR 0 262 98 526 239 39 8 chr1 278481612 278481742 -3711922 - MER94 DNA DNA 0 134 1 203 200 191 67 chr1 278482910 278483015 -3710649 + MIR SINE MIR 30 147 -61 542 246 50 34 chr1 278483384 278483563 -3710101 + MER5A DNA MER1_type 7 188 -1 646 109 11 0 chr1 278483663 278483755 -3709909 + AluJb SINE Alu 205 297 -15 209 316 105 11 chr1 278483760 278483855 -3709809 + MIR SINE MIR 113 216 -46 186 133 0 0 chr1 278483903 278483933 -3709731 + (GA)n Simple_repeat Simple_repeat 2 31 0 2136 113 10 0 chr1 278484268 278484577 -3709087 + AluSx SINE Alu 1 312 0 1426 264 77 17 chr1 278484752 278485275 -3708389 - Charlie7 DNA MER1_type -1743 869 316 292 219 83 42 chr1 278485444 278485540 -3708124 - Charlie7 DNA MER1_type -2511 101 2 802 169 54 0 chr1 278486395 278486543 -3707121 - FRAM SINE Alu -26 150 1 423 259 51 60 chr1 278486565 278486781 -3706883 - L1ME LINE L1 -375 5746 5533 544 336 36 55 chr1 278487279 278487532 -3706132 - L2 LINE L2 0 3272 3025 451 321 83 9 chr1 278487642 278487860 -3705804 + MIR SINE MIR 18 251 -11 1008 243 279 23 chr1 278488026 278488089 -3705575 - L2 LINE L2 -1 3312 3266 2111 126 10 0 chr1 278488089 278488398 -3705266 + AluSx SINE Alu 1 312 0 1008 243 279 23 chr1 278488398 278489325 -3704339 - L2 LINE L2 -47 3266 2076 579 234 76 7 chr1 278490374 278490519 -3703145 + MIR3 SINE MIR 32 186 -22 189 0 0 0 chr1 278490540 278490561 -3703103 + (CAGCT)n Simple_repeat Simple_repeat 4 24 0 890 206 25 66 chr1 278490761 278490789 -3702875 - MIR SINE MIR -3 259 231 2076 99 3 20 chr1 278490789 278491091 -3702573 - AluSx SINE Alu -15 297 1 890 206 25 66 chr1 278491091 278491305 -3702359 - MIR SINE MIR -31 231 27 370 209 0 81 chr1 278491355 278491441 -3702223 + L2 LINE L2 3224 3302 -11 227 287 50 30 chr1 278492375 278492476 -3701188 - L2 LINE L2 -2 3311 3209 311 203 182 1 chr1 278492919 278492999 -3700665 + MER5A DNA MER1_type 31 126 -55 180 305 0 0 chr1 278493078 278493137 -3700527 - L2 LINE L2 -558 2756 2698 492 171 12 0 chr1 278494026 278494108 -3699556 - AluS SINE Alu -228 84 2 1297 150 0 17 chr1 278494252 278494486 -3699178 - AluJb SINE Alu -1 311 82 307 168 1 105 chr1 278494489 278494602 -3699062 + L1MC5 LINE L1 7042 7127 -681 1114 252 43 80 chr1 278494771 278495331 -3698333 + L1MC5 LINE L1 7298 7836 -125 2192 109 0 0 chr1 278495370 278495682 -3697982 - AluSx SINE Alu 0 312 1 1964 127 0 0 chr1 278497254 278497573 -3696091 + AluSx SINE Alu 1 319 0 297 230 153 65 chr1 278497970 278498167 -3695497 + L1MC4a LINE L1 6783 6987 -821 291 151 0 45 chr1 278498156 278498228 -3695436 + L1MA4 LINE L1 6230 6298 -2 * 1197 201 65 55 chr1 278498322 278498719 -3694945 + L1MC5 LINE L1 7134 7534 -427 2410 89 0 0 chr1 278498719 278499022 -3694642 + AluSx SINE Alu 1 303 -9 261 0 0 0 chr1 278499087 278499116 -3694548 + (TTA)n Simple_repeat Simple_repeat 2 30 0 180 77 0 0 chr1 278499337 278499363 -3694301 + (CCCCCA)n Simple_repeat Simple_repeat 5 30 0 580 246 105 13 chr1 278499535 278499763 -3693901 - MIR SINE MIR -1 261 13 216 0 0 0 chr1 278499764 278499788 -3693876 + (TC)n Simple_repeat Simple_repeat 2 25 0 209 339 92 55 chr1 278500117 278500436 -3693228 + L2 LINE L2 2853 3191 -81 2447 76 0 3 chr1 278500436 278500739 -3692925 - AluSx SINE Alu -10 302 1 209 339 92 55 chr1 278500739 278500820 -3692844 + L2 LINE L2 3191 3268 -4 22 0 0 0 chr1 278500892 278500914 -3692750 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 278501087 278501109 -3692555 + AT_rich Low_complexity Low_complexity 1 22 0 778 222 42 0 chr1 278501459 278501626 -3692038 + L1MB3 LINE L1 6008 6181 -2 249 33 0 0 chr1 278502386 278502416 -3691248 + (CA)n Simple_repeat Simple_repeat 2 31 0 1554 205 18 0 chr1 278502831 278503114 -3690550 + AluJo SINE Alu 1 288 -24 1870 138 18 11 chr1 278503545 278503827 -3689837 + AluSc SINE Alu 1 284 -25 2228 108 0 7 chr1 278504089 278504386 -3689278 - AluSg SINE Alu -15 295 1 327 341 82 23 chr1 278504645 278504865 -3688799 + MIR SINE MIR 28 260 -2 209 250 31 16 chr1 278505075 278505139 -3688525 + L2 LINE L2 3200 3264 -8 2283 92 7 0 chr1 278505513 278505808 -3687856 + AluSx SINE Alu 1 297 -15 850 225 21 0 chr1 278505816 278506003 -3687661 + L1MB3 LINE L1 5993 6183 0 358 281 23 83 chr1 278506534 278506751 -3686913 + MIR SINE MIR 3 206 -56 1229 208 55 4 chr1 278507157 278507431 -3686233 + LTR16C LTR ERVL 201 488 -3 2498 87 3 0 chr1 278509052 278509362 -3684302 - AluSq SINE Alu -2 311 1 1108 127 36 0 chr1 278509888 278510053 -3683611 + THE1B LTR MaLR 1 171 -193 2059 120 42 39 chr1 278510057 278510390 -3683274 + THE1B LTR MaLR 29 362 -2 3474 156 51 3 chr1 278510918 278511547 -3682117 - L1MB3 LINE L1 -3 6180 5522 2378 105 0 0 chr1 278511837 278512142 -3681522 - AluSq SINE Alu -8 305 1 1474 185 38 0 chr1 278512632 278512924 -3680740 - L1PB4 LINE L1 -2 6154 5852 2356 107 0 3 chr1 278512985 278513295 -3680369 + AluSc SINE Alu 1 309 0 2322 82 0 0 chr1 278513968 278514294 -3679370 + AluSg SINE Alu 1 326 0 1900 88 0 0 chr1 278514760 278514998 -3678666 + AluSx SINE Alu 59 296 -16 1500 195 51 14 chr1 278516680 278517124 -3676540 + L1M4 LINE L1 4985 5447 -731 323 224 13 0 chr1 278517126 278517202 -3676462 + L1M4 LINE L1 5518 5594 -590 320 0 25 0 chr1 278518036 278518076 -3675588 + (CA)n Simple_repeat Simple_repeat 2 42 0 371 220 71 71 chr1 278518889 278519030 -3674634 + L2 LINE L2 3167 3307 -6 219 254 0 0 chr1 278520256 278520311 -3673353 + L2 LINE L2 3249 3303 -10 1012 163 0 0 chr1 278520314 278520496 -3673168 + FRAM SINE Alu 1 182 0 1993 175 136 5 chr1 278521623 278522035 -3671629 - L1MB3 LINE L1 -25 6158 5693 2284 113 0 3 chr1 278522148 278522459 -3671205 - AluSq SINE Alu -3 310 1 267 346 105 18 chr1 278522460 278522792 -3670872 + L2 LINE L2 533 893 -2421 1882 164 10 16 chr1 278522818 278523128 -3670536 - AluJo SINE Alu -4 308 1 447 244 17 0 chr1 278523225 278523344 -3670320 - LTR67 LTR ERVL -35 522 402 446 338 31 0 chr1 278523423 278523583 -3670081 - LTR67 LTR ERVL -296 261 97 219 69 0 0 chr1 278523676 278523705 -3669959 + (A)n Simple_repeat Simple_repeat 1 29 0 218 193 18 0 chr1 278523708 278523765 -3669899 + GA-rich Low_complexity Low_complexity 2 59 0 222 326 62 66 chr1 278523868 278524126 -3669538 + L2 LINE L2 1360 1616 -1698 1733 105 18 42 chr1 278524286 278524413 -3669251 - Tigger7 DNA MER2_type -1 2586 2457 2297 103 0 22 chr1 278524413 278524732 -3668932 - AluSx SINE Alu 0 312 1 1733 105 18 42 chr1 278524732 278524889 -3668775 - Tigger7 DNA MER2_type -130 2457 2309 1031 173 18 0 chr1 278524893 278525061 -3668603 - Tigger7 DNA MER2_type -534 171 1 2197 112 3 3 chr1 278525113 278525409 -3668255 + AluY SINE Alu 1 296 -15 256 180 20 0 chr1 278525417 278525467 -3668197 + L2 LINE L2 3262 3312 -1 360 315 38 47 chr1 278525759 278525972 -3667692 - MIR SINE MIR -49 213 3 330 292 42 42 chr1 278525980 278526124 -3667540 - MER5A DNA MER1_type -2 187 44 203 272 72 56 chr1 278526673 278526798 -3666866 - L2 LINE L2 -2 3311 3185 1181 181 28 5 chr1 278527131 278527346 -3666318 - AluJb SINE Alu -5 307 88 23 54 0 0 chr1 278527366 278527403 -3666261 + AT_rich Low_complexity Low_complexity 1 37 0 2940 175 43 4 chr1 278527476 278528013 -3665651 - L1MB3 LINE L1 -87 6096 5539 526 139 120 0 chr1 278528018 278528126 -3665538 - MIR SINE MIR -127 135 15 1816 142 0 47 chr1 278528213 278528509 -3665155 - AluJo SINE Alu -22 290 9 553 180 99 0 chr1 278528512 278528623 -3665041 - FLAM_A SINE Alu -11 131 10 687 218 0 0 chr1 278528694 278528827 -3664837 - FLAM_A SINE Alu 0 133 1 694 162 111 0 chr1 278529037 278529154 -3664510 - FLAM_A SINE Alu -2 131 2 1317 191 48 107 chr1 278529373 278529480 -3664184 - L1MB3 LINE L1 -2104 4042 3930 573 136 0 0 chr1 278529480 278529568 -3664096 - L1MA5 LINE L1 -5 6295 6208 1317 191 48 107 chr1 278529568 278529956 -3663708 - L1MB3 LINE L1 -2216 3930 3576 2049 118 28 3 chr1 278529969 278530256 -3663408 - AluSx SINE Alu -18 294 1 180 304 139 0 chr1 278530405 278530520 -3663144 - L2 LINE L2 -188 3084 2954 204 321 44 77 chr1 278530639 278530913 -3662751 - L2 LINE L2 -456 2858 2594 1697 129 43 16 chr1 278530917 278531195 -3662469 - AluSx SINE Alu 0 307 23 1901 165 0 0 chr1 278531264 278531583 -3662081 + AluJb SINE Alu 1 319 0 805 277 92 44 chr1 278531783 278532285 -3661379 + L1MC4 LINE L1 7507 8032 -10 1707 166 6 35 chr1 278532495 278532809 -3660855 + AluJo SINE Alu 1 305 -7 27 92 0 0 chr1 278532891 278532967 -3660697 + AT_rich Low_complexity Low_complexity 1 76 0 1535 148 35 76 chr1 278533283 278533600 -3660064 - AluJo SINE Alu -8 304 1 2500 71 7 3 chr1 278533636 278533945 -3659719 - AluSg SINE Alu 0 310 1 2412 78 0 0 chr1 278534083 278534379 -3659285 - AluY SINE Alu -15 296 1 2251 107 0 19 chr1 278534465 278534773 -3658891 - AluSx SINE Alu -10 302 1 2577 71 0 0 chr1 278535284 278535593 -3658071 - AluY SINE Alu -2 309 1 3593 116 25 9 chr1 278535593 278536144 -3657520 - Tigger4(Zombi) DNA MER2_type -4 2727 2168 348 160 15 5 chr1 278536144 278536244 -3657420 - Tigger4(Zombi) DNA MER2_type 0 2731 1 448 235 39 0 chr1 278536346 278536448 -3657216 + MER103 DNA DNA 4 109 -57 568 123 0 0 chr1 278536546 278536627 -3657037 + AluSg1 SINE Alu 2 82 -227 34 0 0 0 chr1 278536933 278536967 -3656697 + AT_rich Low_complexity Low_complexity 1 34 0 324 254 14 0 chr1 278537992 278538063 -3655601 + U4 snRNA snRNA 1 72 -73 373 274 69 23 chr1 278538111 278538323 -3655341 + L1ME3 LINE L1 5667 5883 -238 2231 131 0 3 chr1 278538360 278538673 -3654991 + AluSx SINE Alu 1 312 0 264 305 23 41 chr1 278538880 278539085 -3654579 + L1ME4a LINE L1 5277 5474 -708 267 103 0 0 chr1 278539248 278539287 -3654377 + (GGGTG)n Simple_repeat Simple_repeat 1 39 0 412 213 28 28 chr1 278539297 278539405 -3654259 + MIR SINE MIR 23 130 -78 222 352 0 0 chr1 278539426 278539497 -3654167 + L2 LINE L2 3202 3272 0 318 228 73 16 chr1 278539501 278539624 -3654040 + L1ME4a LINE L1 5925 6054 -67 790 194 44 6 chr1 278539733 278539893 -3653771 - AluJb SINE Alu -16 296 131 1306 211 95 75 chr1 278539916 278540041 -3653623 + L2 LINE L2 2420 2541 -772 2422 81 0 7 chr1 278540041 278540348 -3653316 + AluSc SINE Alu 2 306 -3 1306 211 95 75 chr1 278540348 278540577 -3653087 + L2 LINE L2 2541 2764 -549 2303 92 3 25 chr1 278540577 278540892 -3652772 - AluSq SINE Alu -5 308 1 1306 211 95 75 chr1 278540892 278541271 -3652393 + L2 LINE L2 2764 3255 -58 479 207 15 59 chr1 278541533 278541668 -3651996 + L1ME3 LINE L1 6034 6162 0 240 200 0 0 chr1 278542218 278542268 -3651396 + L2 LINE L2 3263 3312 -1 2326 112 0 0 chr1 278542556 278542859 -3650805 + AluSx SINE Alu 1 303 -9 940 140 112 28 chr1 278544018 278544196 -3649468 - AluJo SINE Alu -31 281 89 335 173 0 0 chr1 278544921 278544973 -3648691 - AluS SINE Alu -225 78 27 1901 165 0 0 chr1 278545046 278545365 -3648299 + AluJb SINE Alu 1 319 0 805 277 92 44 chr1 278545565 278546067 -3647597 + L1MC4 LINE L1 7507 8032 -10 1707 166 6 35 chr1 278546277 278546591 -3647073 + AluJo SINE Alu 1 305 -7 27 92 0 0 chr1 278546673 278546749 -3646915 + AT_rich Low_complexity Low_complexity 1 76 0 1535 148 35 76 chr1 278547065 278547382 -3646282 - AluJo SINE Alu -8 304 1 2363 97 6 3 chr1 278547418 278547729 -3645935 - AluSx SINE Alu 0 312 1 430 303 65 35 chr1 278547799 278548060 -3645604 - L2 LINE L2 -356 2958 2690 1224 121 12 0 chr1 278548062 278548235 -3645429 + FAM SINE Alu 1 175 0 2220 104 0 13 chr1 278548672 278548971 -3644693 - AluSx SINE Alu -9 303 9 673 135 0 29 chr1 278549657 278549761 -3643903 - FLAM_A SINE Alu -12 130 30 21 36 0 0 chr1 278549842 278549870 -3643794 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr1 278549954 278549980 -3643684 + AT_rich Low_complexity Low_complexity 1 26 0 459 278 37 68 chr1 278550306 278550497 -3643167 - MIR SINE MIR -76 186 2 875 164 0 0 chr1 278550569 278550703 -3642961 - AluJo SINE Alu -178 134 1 2588 138 149 129 chr1 278550721 278551132 -3642532 - L1MC3 LINE L1 -169 7616 7215 288 235 12 25 chr1 278551132 278551213 -3642451 - MLT1F1 LTR MaLR -446 121 42 2588 138 149 129 chr1 278551213 278551285 -3642379 - L1MC3 LINE L1 -570 7215 7146 3897 168 63 5 chr1 278551285 278551947 -3641717 + MER44D DNA MER2_type 5 705 0 2588 138 149 129 chr1 278551947 278552131 -3641533 - L1MC3 LINE L1 -639 7146 6853 816 179 90 7 chr1 278552134 278552279 -3641385 - AluSg/x SINE Alu -23 289 133 207 69 0 0 chr1 278552301 278552330 -3641334 + (CTA)n Simple_repeat Simple_repeat 1 29 0 1739 243 66 68 chr1 278552349 278552953 -3640711 - MER21B LTR ERV1 -60 803 201 273 186 93 58 chr1 278553031 278553117 -3640547 - MIR SINE MIR -15 247 159 2133 125 0 22 chr1 278553931 278554250 -3639414 + AluSx SINE Alu 1 312 0 537 194 116 16 chr1 278554268 278554397 -3639267 - MLT1F LTR MaLR 0 567 426 1293 243 3 61 chr1 278554404 278554746 -3638918 - MLT1F LTR MaLR -220 322 1 432 224 51 128 chr1 278554746 278555058 -3638606 - MLT1F-int LTR MaLR 0 1371 1084 1836 174 69 6 chr1 278555060 278555421 -3638243 - MSTD LTR MaLR 0 396 13 293 319 84 42 chr1 278555722 278555888 -3637776 - MLT1F-int LTR MaLR -507 864 692 1444 197 38 7 chr1 278555900 278556190 -3637474 - AluJo SINE Alu -9 303 5 530 305 62 5 chr1 278556196 278556406 -3637258 - MLT1F-int LTR MaLR -859 512 291 298 186 0 0 chr1 278556440 278556499 -3637165 - MLT1F-int LTR MaLR -1307 64 6 1498 221 168 20 chr1 278556529 278556982 -3636682 - MLT1F LTR MaLR -2 540 21 259 200 73 0 chr1 278556984 278557039 -3636625 - MLT1F LTR MaLR -483 59 1 2057 134 81 6 chr1 278557401 278557721 -3635943 + MER2 DNA MER2_type 1 344 0 805 102 0 73 chr1 278558167 278558304 -3635360 - L1PA6 LINE L1 -273 5881 5755 4039 193 43 21 chr1 278558485 278559371 -3634293 - L1MB7 LINE L1 0 6184 5280 1692 122 8 4 chr1 278559389 278559636 -3634028 - AluJo SINE Alu -15 297 50 23 0 0 0 chr1 278559651 278559674 -3633990 + AT_rich Low_complexity Low_complexity 1 23 0 1228 138 5 0 chr1 278559793 278559982 -3633682 - L1PA13 LINE L1 -7 6156 5967 431 195 52 0 chr1 278560156 278560233 -3633431 - AluJo/FRAM SINE Alu -30 282 202 1973 114 11 11 chr1 278560235 278560372 -3633292 - AluSx SINE Alu -39 273 137 2296 79 3 35 chr1 278560372 278560688 -3632976 - AluY SINE Alu -5 306 1 1973 114 11 11 chr1 278560688 278560823 -3632841 - AluSx SINE Alu -174 138 1 207 0 0 0 chr1 278560895 278560918 -3632746 + (TG)n Simple_repeat Simple_repeat 2 24 0 30 27 0 0 chr1 278561022 278561059 -3632605 + AT_rich Low_complexity Low_complexity 1 37 0 1241 162 0 83 chr1 278561083 278561336 -3632328 + AluJo SINE Alu 1 232 -80 280 258 107 68 chr1 278561438 278561613 -3632051 - L1ME4a LINE L1 -149 5972 5783 1047 168 0 12 chr1 278561613 278561780 -3631884 - FRAM SINE Alu -1 165 1 280 258 107 68 chr1 278561780 278561856 -3631808 - L1ME4a LINE L1 -338 5783 5711 1620 172 17 20 chr1 278562609 278562906 -3630758 - AluJo SINE Alu -16 296 1 2349 115 0 0 chr1 278563246 278563551 -3630113 + AluSx SINE Alu 1 305 -7 238 280 137 75 chr1 278563893 278564346 -3629318 + L1ME LINE L1 51 531 -5539 693 247 31 50 chr1 278564469 278564792 -3628872 + L1ME LINE L1 511 779 -5291 233 312 0 0 chr1 278564845 278564922 -3628742 + L1ME LINE L1 900 976 -5094 2255 104 7 10 chr1 278565075 278565383 -3628281 - AluSx SINE Alu -5 307 1 1095 81 0 0 chr1 278565383 278565519 -3628145 - AluSq/x SINE Alu -176 136 1 2275 73 0 48 chr1 278565700 278566014 -3627650 + AluY SINE Alu 1 299 -12 816 153 0 0 chr1 278566028 278566165 -3627499 + AluSg/x SINE Alu 174 310 0 226 232 72 58 chr1 278566557 278566626 -3627038 + L2 LINE L2 3238 3307 -6 2136 120 3 19 chr1 278567215 278567532 -3626132 - AluSx SINE Alu 0 312 1 1286 196 4 0 chr1 278567800 278568025 -3625639 - AluJo SINE Alu -21 291 66 1608 254 73 69 chr1 278568027 278568632 -3625032 - HAL1 LINE L1 -475 2032 1426 398 246 15 69 chr1 278568632 278568762 -3624902 + MIR SINE MIR 138 260 -2 286 228 325 0 chr1 278569440 278569554 -3624110 + MIR SINE MIR 63 213 -49 2007 125 4 0 chr1 278569587 278569890 -3623774 - AluSx SINE Alu 0 304 1 2214 103 3 7 chr1 278569907 278570207 -3623457 - AluSx SINE Alu -13 299 1 333 217 48 12 chr1 278570359 278570442 -3623222 + L2 LINE L2 3227 3312 -1 220 319 0 0 chr1 278570463 278570532 -3623132 - MIR3 SINE MIR -27 181 113 1737 120 87 4 chr1 278570604 278570870 -3622794 - AluSg SINE Alu -22 288 1 974 227 160 56 chr1 278570905 278571354 -3622310 - MLT1J LTR MaLR -13 498 3 358 188 0 50 chr1 278571355 278571435 -3622229 + Charlie8 DNA MER1_type 81 156 -2261 1794 172 0 7 chr1 278571615 278571905 -3621759 + AluJo SINE Alu 1 288 -24 918 135 54 5 chr1 278572022 278572207 -3621457 - Charlie5 DNA MER1_type 0 2624 2431 2014 125 0 28 chr1 278572207 278572528 -3621136 - AluSx SINE Alu 0 312 1 607 152 0 0 chr1 278572528 278572633 -3621031 - Charlie5 DNA MER1_type -272 2340 2236 653 175 79 0 chr1 278572636 278572750 -3620914 - Charlie5 DNA MER1_type -2487 125 3 296 380 28 7 chr1 278572913 278573055 -3620609 + L2 LINE L2 2933 3077 -195 1120 122 0 0 chr1 278573198 278573346 -3620318 - AluSq/x SINE Alu -165 148 1 306 220 0 0 chr1 278573357 278573416 -3620248 - HsTC2 DNA Tc2 -13 1885 1827 590 287 116 27 chr1 278573524 278573812 -3619852 - L1MC/D LINE L1 -2065 5743 5405 2262 114 13 0 chr1 278573812 278574120 -3619544 - AluSx SINE Alu 0 312 1 590 287 116 27 chr1 278574120 278574245 -3619419 - L1MC/D LINE L1 -2403 5405 5293 316 298 21 69 chr1 278574356 278574544 -3619120 - MARNA DNA Mariner -237 349 171 2420 117 39 25 chr1 278574954 278575313 -3618351 + THE1B LTR MaLR 1 364 0 303 282 94 45 chr1 278575900 278576102 -3617562 + L1ME3A LINE L1 5741 5952 -218 22 0 0 0 chr1 278576353 278576375 -3617289 + AT_rich Low_complexity Low_complexity 1 22 0 258 294 101 0 chr1 278576497 278576606 -3617058 - HAL1b LINE L1 -71 1277 1158 216 265 0 0 chr1 278576614 278576663 -3617001 + GA-rich Low_complexity Low_complexity 2 50 0 1198 245 106 28 chr1 278576699 278577178 -3616486 - HAL1b LINE L1 -251 1097 570 1766 151 11 0 chr1 278577178 278577462 -3616202 - AluJo SINE Alu -25 287 1 1198 245 106 28 chr1 278577462 278577521 -3616143 - HAL1b LINE L1 -778 570 517 236 321 38 0 chr1 278577534 278577640 -3616024 - L1ME LINE L1 -298 5823 5714 2171 108 0 7 chr1 278578578 278578873 -3614791 - AluSx SINE Alu -19 293 1 2192 126 0 0 chr1 278578876 278579170 -3614494 - AluSx SINE Alu -18 294 1 611 130 0 0 chr1 278579647 278579739 -3613925 - MER2 DNA MER2_type -181 164 73 1022 228 94 82 chr1 278580515 278580953 -3612711 + MLT1J2 LTR MaLR 1 443 -7 725 177 73 0 chr1 278582150 278582274 -3611390 + FLAM_A SINE Alu 1 133 0 2200 113 23 0 chr1 278582953 278583294 -3610370 - AluSx SINE Alu 0 349 2 532 293 127 45 chr1 278583547 278583593 -3610071 + L1M4 LINE L1 2897 2938 -3208 2318 123 0 0 chr1 278583593 278583903 -3609761 + AluSx SINE Alu 1 310 -2 532 293 127 45 chr1 278583903 278584347 -3609317 + L1M4 LINE L1 2938 3430 -2716 4144 201 51 27 chr1 278584357 278584858 -3608806 + L1MC4 LINE L1 4517 4427 -1719 2296 107 0 22 chr1 278584858 278585175 -3608489 + AluSx SINE Alu 1 310 -2 4144 201 51 27 chr1 278585175 278586177 -3607487 + L1MC4 LINE L1 4426 5403 -743 3316 174 24 0 chr1 278585666 278586247 -3607417 + L1MB7 LINE L1 5536 6130 -54 * 1282 300 120 38 chr1 278586270 278587471 -3606193 + L1M4 LINE L1 3427 4765 -1381 2381 79 0 0 chr1 278587471 278587762 -3605902 + AluY SINE Alu 1 291 -20 1282 300 120 38 chr1 278587762 278587995 -3605669 + L1M4 LINE L1 4765 4978 -1168 30 27 0 0 chr1 278588129 278588166 -3605498 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1 278588266 278588287 -3605377 + AT_rich Low_complexity Low_complexity 1 21 0 653 176 38 15 chr1 278588369 278588500 -3605164 + L1M2 LINE L1 5686 5819 -472 1003 194 9 50 chr1 278588551 278588773 -3604891 + AluJo SINE Alu 85 297 -15 2539 231 63 9 chr1 278588774 278589423 -3604241 - L1MC4a LINE L1 -51 7757 7074 348 341 88 16 chr1 278589713 278589895 -3603769 + MIR SINE MIR 17 211 -51 892 136 0 0 chr1 278589950 278590075 -3603589 + FLAM_C SINE Alu 3 127 -6 778 257 99 89 chr1 278590084 278590849 -3602815 - L2 LINE L2 0 3313 2552 1966 140 14 124 chr1 278590861 278591297 -3602367 + MLT1B LTR MaLR 1 388 -2 319 247 108 57 chr1 278591327 278591485 -3602179 + L2 LINE L2 3119 3284 -29 319 206 196 0 chr1 278591816 278591908 -3601756 + L2 LINE L2 3203 3312 -1 2362 109 0 3 chr1 278592438 278592751 -3600913 + AluSx SINE Alu 1 312 0 1042 155 47 188 chr1 278593068 278593216 -3600448 - MER63 DNA MER1_type 0 1062 895 567 200 19 0 chr1 278593216 278593321 -3600343 + U6 snRNA snRNA 1 107 0 1042 155 47 188 chr1 278593321 278593624 -3600040 - MER63 DNA MER1_type -167 895 675 349 82 0 0 chr1 278593790 278593839 -3599825 - Alu SINE Alu -3 299 251 270 56 0 0 chr1 278593839 278593875 -3599789 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1699 92 36 111 chr1 278593875 278594181 -3599483 - AluSx SINE Alu -29 283 1 27 49 0 0 chr1 278594222 278594263 -3599401 + AT_rich Low_complexity Low_complexity 1 41 0 1507 199 3 10 chr1 278594294 278594585 -3599079 - AluJb SINE Alu -18 294 6 2318 151 62 42 chr1 278594609 278595293 -3598371 - MER51A LTR ERV1 -9 625 1 2063 173 40 63 chr1 278596377 278596604 -3597060 - Tigger2a DNA MER2_type -2274 434 203 2245 122 0 0 chr1 278596604 278596915 -3596749 + AluSx SINE Alu 1 311 -1 2063 173 40 63 chr1 278596915 278596941 -3596723 - Tigger2a DNA MER2_type -2505 203 178 1949 143 6 35 chr1 278596941 278597255 -3596409 + AluSx SINE Alu 6 310 -2 2063 173 40 63 chr1 278597255 278597444 -3596220 - Tigger2a DNA MER2_type -2530 178 1 31 26 0 0 chr1 278597765 278597803 -3595861 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 29 0 chr1 278598001 278598069 -3595595 - L1MC4 LINE L1 -144 7898 7829 602 197 0 60 chr1 278598070 278598209 -3595455 - FLAM_A SINE Alu 0 140 9 2129 145 3 0 chr1 278598223 278598534 -3595130 - AluSx SINE Alu 0 312 1 267 143 20 20 chr1 278598534 278598583 -3595081 - L1MC4 LINE L1 -203 7839 7791 672 236 27 87 chr1 278599026 278599265 -3594399 + MIR SINE MIR 10 237 -25 214 288 0 0 chr1 278599449 278599508 -3594156 + T-rich Low_complexity Low_complexity 1 59 0 932 111 0 7 chr1 278599514 278599649 -3594015 - AluSq/x SINE Alu -179 134 1 732 219 26 17 chr1 278599726 278599907 -3593757 + MIR SINE MIR 59 241 -21 1207 152 54 15 chr1 278600128 278600332 -3593332 - AluJb SINE Alu -13 299 88 1657 161 15 8 chr1 278600370 278600637 -3593027 + AluJo SINE Alu 14 282 -30 21 0 0 0 chr1 278601489 278601510 -3592154 + AT_rich Low_complexity Low_complexity 1 21 0 197 364 0 10 chr1 278602097 278602196 -3591468 + L2 LINE L2 1355 1452 -1862 900 211 111 5 chr1 278602356 278602546 -3591118 + MER6B DNA MER2_type 1 210 0 193 309 58 36 chr1 278602695 278602834 -3590830 - L2 LINE L2 -1746 1568 1427 217 250 61 76 chr1 278603259 278603391 -3590273 + L2 LINE L2 1639 1768 -1546 693 180 0 136 chr1 278603396 278603602 -3590062 - AluSq SINE Alu 0 313 136 527 311 122 16 chr1 278603602 278604036 -3589628 + L2 LINE L2 1805 2284 -1030 1432 171 87 103 chr1 278604039 278604477 -3589187 - LTR40c LTR ERVL 0 465 35 28 0 0 0 chr1 278604536 278604564 -3589100 + AT_rich Low_complexity Low_complexity 1 28 0 1812 157 0 10 chr1 278604579 278604873 -3588791 - AluJo SINE Alu -21 291 1 798 175 15 0 chr1 278605157 278605294 -3588370 - FAM SINE Alu -22 163 25 1014 85 0 0 chr1 278605554 278605683 -3587981 - AluSg/x SINE Alu -20 292 164 1623 130 186 48 chr1 278605883 278605907 -3587757 - MER57A LTR ERV1 0 403 384 2481 84 0 3 chr1 278605907 278606217 -3587447 + AluSc SINE Alu 1 309 0 1623 130 186 48 chr1 278606217 278606535 -3587129 - MER57A LTR ERV1 -19 384 8 496 70 113 0 chr1 278606535 278606606 -3587058 + MADE1 DNA Mariner 2 80 0 1335 170 9 5 chr1 278606616 278606863 -3586801 - MER33 DNA MER1_type -85 239 1 2147 136 35 35 chr1 278606901 278607305 -3586359 - L1MA4 LINE L1 0 6300 5897 921 163 0 76 chr1 278607350 278607500 -3586164 + AluJb SINE Alu 133 268 -44 201 39 0 0 chr1 278607500 278607526 -3586138 + (TAA)n Simple_repeat Simple_repeat 1 26 0 921 163 0 76 chr1 278607526 278607559 -3586105 + AluJb SINE Alu 268 302 -10 384 200 40 0 chr1 278608197 278608272 -3585392 - MIR SINE MIR -182 80 3 * 439 224 78 0 chr1 278608272 278608385 -3585279 - MIR SINE MIR -72 190 69 219 239 239 11 chr1 278609498 278609586 -3584078 + MIR SINE MIR 84 191 -71 1211 209 18 0 chr1 278610092 278610312 -3583352 + MER58A DNA MER1_type 1 224 0 413 303 99 0 chr1 278610351 278610503 -3583161 + MIR SINE MIR 32 198 -64 2028 158 0 0 chr1 278611082 278611386 -3582278 + AluSx SINE Alu 1 304 -8 1615 295 75 33 chr1 278611905 278612780 -3580884 - HERV16 LTR ERVL -3240 1756 780 263 308 196 0 chr1 278612783 278612890 -3580774 - LTR16B LTR ERVL -322 142 15 469 184 112 0 chr1 278612892 278612990 -3580674 + FRAM SINE Alu 38 146 -30 2323 76 0 3 chr1 278612990 278613281 -3580383 - AluSx SINE Alu -22 290 1 1251 247 120 62 chr1 278613694 278614350 -3579314 - HAL1 LINE L1 -644 1863 1170 499 76 0 15 chr1 278614353 278614419 -3579245 - AluSq/x SINE Alu -180 133 69 1289 129 52 0 chr1 278614419 278614612 -3579052 - AluSx SINE Alu -109 203 1 1115 175 127 9 chr1 278614612 278614943 -3578721 - HAL1 LINE L1 -1309 1198 829 1162 268 156 16 chr1 278615100 278615529 -3578135 - HAL1 LINE L1 -2017 490 2 2459 71 0 0 chr1 278615885 278616181 -3577483 + AluY SINE Alu 1 296 -15 376 265 68 15 chr1 278616246 278616378 -3577286 + L2 LINE L2 2486 2624 -690 1070 108 0 38 chr1 278616399 278616556 -3577108 - AluSg/x SINE Alu -25 285 135 1775 168 0 0 chr1 278617708 278617988 -3575676 - AluJo SINE Alu -18 294 15 1416 184 68 29 chr1 278618276 278618350 -3575314 + L1MB2 LINE L1 5809 5879 -292 2702 145 18 21 chr1 278618350 278618785 -3574879 - Tigger2a DNA MER2_type 0 434 1 1416 184 68 29 chr1 278618785 278619020 -3574644 + L1MB2 LINE L1 5879 6130 -41 1705 183 0 10 chr1 278619020 278619320 -3574344 + AluJo SINE Alu 1 297 -15 848 168 0 0 chr1 278619324 278619455 -3574209 - MER2 DNA MER2_type -209 136 6 269 226 108 10 chr1 278619566 278619668 -3573996 - L1M4 LINE L1 -373 5805 5694 1458 202 18 110 chr1 278620003 278620404 -3573260 + MLT1A1 LTR MaLR 1 364 -1 2137 195 39 19 chr1 278620418 278620879 -3572785 + MLT1A1-int LTR MaLR 17 486 -1249 477 282 67 37 chr1 278620853 278621159 -3572505 + L1ME4a LINE L1 5518 5834 -287 * 2222 144 94 0 chr1 278621161 278621544 -3572120 + L1MC1 LINE L1 5441 5859 -474 269 73 0 0 chr1 278621545 278621586 -3572078 - AluJb SINE Alu 0 302 262 1139 171 19 19 chr1 278621587 278621797 -3571867 - AluJb SINE Alu -102 210 1 1430 139 6 111 chr1 278621798 278621902 -3571762 + L1MC1 LINE L1 6018 6131 -202 2673 153 19 16 chr1 278621902 278622326 -3571338 + MSTB LTR MaLR 2 426 0 1430 139 6 111 chr1 278622326 278622392 -3571272 + L1MC1 LINE L1 6131 6202 -131 2293 112 0 0 chr1 278622392 278622696 -3570968 - AluSx SINE Alu -8 304 1 1430 139 6 111 chr1 278622696 278622877 -3570787 + L1MC1 LINE L1 6202 6333 0 236 170 19 19 chr1 278622953 278623006 -3570658 + (TA)n Simple_repeat Simple_repeat 2 54 0 297 244 84 59 chr1 278623058 278623177 -3570487 + L1ME4a LINE L1 6000 6121 0 224 276 37 28 chr1 278624467 278624578 -3569086 + MIR SINE MIR 34 143 -65 2004 106 39 7 chr1 278625987 278626270 -3567394 - AluSc SINE Alu -1 308 17 633 205 18 0 chr1 278626410 278626522 -3567142 - MLT1B LTR MaLR -7 383 270 626 153 23 8 chr1 278626578 278626709 -3566955 + L1MC3 LINE L1 7558 7690 -95 5609 155 57 11 chr1 278626729 278628236 -3565428 + L1MA9 LINE L1 4734 6312 0 518 140 20 20 chr1 278628233 278628333 -3565331 + L1MC3 LINE L1 7678 7777 -8 * 544 338 170 11 chr1 278629742 278630363 -3563301 + L2 LINE L2 2354 3078 -194 2266 81 3 0 chr1 278630363 278630720 -3562944 - AluY SINE Alu 0 359 2 2325 108 0 0 chr1 278630722 278631029 -3562635 - AluSx SINE Alu -5 307 1 296 293 69 26 chr1 278631202 278631318 -3562346 + L2 LINE L2 3152 3272 0 2228 97 0 14 chr1 278631923 278632245 -3561419 - AluSq SINE Alu 0 318 1 2288 149 0 15 chr1 278632273 278632615 -3561049 + MER1B DNA MER1_type 1 337 0 192 216 0 0 chr1 278632738 278632789 -3560875 + (TA)n Simple_repeat Simple_repeat 1 51 0 24 0 0 0 chr1 278633296 278633320 -3560344 + GC_rich Low_complexity Low_complexity 1 24 0 2068 75 4 19 chr1 278633320 278633588 -3560076 - AluSx SINE Alu -18 294 31 219 171 24 0 chr1 278634507 278634548 -3559116 + L2 LINE L2 3272 3313 0 305 361 80 19 chr1 278634633 278634996 -3558668 - L2 LINE L2 -384 2930 2546 614 290 16 21 chr1 278635803 278635989 -3557675 - MIR SINE MIR -32 230 46 23 33 0 0 chr1 278636961 278636991 -3556673 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr1 278637458 278637492 -3556172 + (CA)n Simple_repeat Simple_repeat 2 35 0 1839 193 8 23 chr1 278638265 278638559 -3555105 - L1 LINE L1 -1439 4707 4419 2128 100 31 0 chr1 278638559 278638849 -3554815 - AluSq SINE Alu -14 299 1 1839 193 8 23 chr1 278638849 278638938 -3554726 - L1 LINE L1 -1727 4419 4330 198 0 0 0 chr1 278638956 278638978 -3554686 + (A)n Simple_repeat Simple_repeat 1 22 0 336 317 70 7 chr1 278639310 278639452 -3554212 - MLT1K LTR MaLR -3 585 435 289 211 84 0 chr1 278639456 278639527 -3554137 + Zaphod DNA AcHobo 1 77 -3954 1688 135 9 94 chr1 278639566 278639718 -3553946 - AluSx SINE Alu -20 292 179 2326 73 3 13 chr1 278639718 278640018 -3553646 - AluY SINE Alu -14 297 1 1688 135 9 94 chr1 278640018 278640184 -3553480 - AluSx SINE Alu -133 179 1 1310 102 0 6 chr1 278640199 278640375 -3553289 - AluSp SINE Alu -16 297 123 708 172 46 68 chr1 278640505 278640644 -3553020 + MER33 DNA MER1_type 29 169 -2455 246 32 0 0 chr1 278640644 278640675 -3552989 + (TG)n Simple_repeat Simple_repeat 2 32 0 1686 176 3 0 chr1 278640675 278640959 -3552705 - AluJb SINE Alu -27 285 1 708 172 46 68 chr1 278640959 278641076 -3552588 + MER33 DNA MER1_type 167 362 -1 378 0 0 0 chr1 278641502 278641544 -3552120 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2097 107 0 7 chr1 278641553 278641844 -3551820 - AluSx SINE Alu -23 289 1 665 147 103 9 chr1 278642017 278642133 -3551531 + FLAM_A SINE Alu 1 127 -6 1216 69 0 0 chr1 278642646 278642791 -3550873 + AluSc SINE Alu 1 145 -164 1218 133 4 98 chr1 278642892 278643126 -3550538 + AluSg/x SINE Alu 87 298 -12 229 189 216 0 chr1 278643512 278643586 -3550078 + MIR SINE MIR 32 121 -141 1982 161 33 94 chr1 278643634 278643753 -3549911 + Charlie1b DNA MER1_type 34 159 -2602 2413 81 0 31 chr1 278643753 278644073 -3549591 - AluSx SINE Alu -2 310 1 1982 161 33 94 chr1 278644073 278644474 -3549190 + Charlie1b DNA MER1_type 159 522 -1 1957 159 0 0 chr1 278644578 278644879 -3548785 - AluSx SINE Alu -11 301 1 726 176 50 0 chr1 278644992 278645111 -3548553 - FLAM_A SINE Alu -8 125 1 1984 115 6 57 chr1 278645293 278645607 -3548057 - AluSx SINE Alu -14 298 1 252 200 0 0 chr1 278645833 278645888 -3547776 + (TG)n Simple_repeat Simple_repeat 2 56 0 4522 146 40 73 chr1 278645889 278646158 -3547506 - L1MB3 LINE L1 -2 6181 5905 780 98 29 0 chr1 278646158 278646260 -3547404 + U6 snRNA snRNA 1 105 -2 4522 146 40 73 chr1 278646260 278646924 -3546740 - L1MB3 LINE L1 -278 5905 5279 459 237 160 12 chr1 278646931 278647031 -3546633 - L1MC4a LINE L1 -1875 5933 5849 2323 88 0 3 chr1 278647031 278647326 -3546338 + AluSx SINE Alu 1 294 -18 459 237 160 12 chr1 278647326 278647394 -3546270 - L1MC4a LINE L1 -1959 5849 5740 619 208 0 8 chr1 278647495 278647615 -3546049 + FRAM SINE Alu 28 146 -30 2274 98 10 0 chr1 278647615 278647911 -3545753 - AluSp SINE Alu -14 299 1 23 54 0 0 chr1 278647924 278647961 -3545703 + AT_rich Low_complexity Low_complexity 1 37 0 225 303 32 32 chr1 278648241 278648426 -3545238 - L1ME LINE L1 -332 5789 5605 25 0 0 0 chr1 278648429 278648454 -3545210 + AT_rich Low_complexity Low_complexity 1 25 0 699 139 9 0 chr1 278648454 278648569 -3545095 - LTR9B LTR ERV1 -84 560 445 854 156 0 7 chr1 278648585 278648720 -3544944 - AluJb SINE Alu -178 134 1 4568 156 11 6 chr1 278648821 278649554 -3544110 - L1MB2 LINE L1 -10 6161 5425 2105 139 0 0 chr1 278649833 278650136 -3543528 - AluSx SINE Alu -9 303 1 2133 103 0 4 chr1 278650227 278650533 -3543131 - AluSx SINE Alu 0 318 14 413 290 39 68 chr1 278650552 278650759 -3542905 - MIR SINE MIR -34 228 28 1303 119 9 0 chr1 278650800 278650812 -3542852 + AluJb SINE Alu 75 85 -227 1740 131 7 33 chr1 278650812 278650893 -3542771 + AluJb SINE Alu 1 83 -229 2633 58 0 0 chr1 278650893 278651203 -3542461 + AluY SINE Alu 1 310 -1 1740 131 7 33 chr1 278651203 278651396 -3542268 + AluJb SINE Alu 83 268 -44 1303 119 9 0 chr1 278651396 278651473 -3542191 + AluJb SINE Alu 85 268 -44 287 273 81 0 chr1 278652667 278652766 -3540898 - L2 LINE L2 -8 3305 3199 2568 52 7 0 chr1 278653279 278653584 -3540080 - AluSc SINE Alu -2 307 1 201 230 29 22 chr1 278655327 278655466 -3538198 + GA-rich Low_complexity Low_complexity 3 142 0 * 292 82 33 33 chr1 278655441 278655502 -3538162 + (CGGGG)n Simple_repeat Simple_repeat 2 62 0 1903 153 0 10 chr1 278657408 278657722 -3535942 - AluJb SINE Alu -1 311 1 2103 115 11 0 chr1 278658069 278658356 -3535308 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr1 278658390 278658425 -3535239 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr1 278658455 278658476 -3535188 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr1 278658594 278658623 -3535041 + AT_rich Low_complexity Low_complexity 1 29 0 2105 126 0 0 chr1 278659015 278659301 -3534363 + AluSg SINE Alu 1 286 -24 281 271 47 0 chr1 278659301 278659386 -3534278 + L1MC4 LINE L1 6615 6703 -1339 228 232 21 63 chr1 278659358 278659453 -3534211 - L1MC4 LINE L1 -1339 6703 6613 * 1224 65 0 0 chr1 278659865 278660019 -3533645 - L1PA5 LINE L1 -4 6150 5997 21 0 0 0 chr1 278660172 278660193 -3533471 + AT_rich Low_complexity Low_complexity 1 21 0 212 313 67 60 chr1 278660193 278660327 -3533337 + MIR SINE MIR 48 182 -80 219 274 96 67 chr1 278660924 278661059 -3532605 - MIR SINE MIR -95 167 29 1617 154 39 32 chr1 278661064 278661379 -3532285 - AluJb SINE Alu 0 317 1 410 245 32 19 chr1 278662367 278662490 -3531174 + MIR SINE MIR 35 162 -46 1274 155 199 12 chr1 278662497 278662748 -3530916 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr1 278662810 278662835 -3530829 + AT_rich Low_complexity Low_complexity 1 25 0 2077 121 0 7 chr1 278662835 278663125 -3530539 - AluSx SINE Alu -24 288 1 391 289 25 0 chr1 278663196 278663317 -3530347 - MIR SINE MIR -20 242 119 27 0 0 0 chr1 278663589 278663616 -3530048 + AT_rich Low_complexity Low_complexity 1 27 0 2237 107 0 0 chr1 278663944 278664265 -3529399 - AluSx SINE Alu 0 322 2 479 193 163 30 chr1 278664388 278664523 -3529141 + FRAM SINE Alu 1 146 -30 191 192 26 103 chr1 278665216 278665294 -3528370 - L2 LINE L2 0 3313 3242 2692 30 0 0 chr1 278666245 278666548 -3527116 + AluY SINE Alu 1 303 -8 531 199 38 23 chr1 278666828 278666959 -3526705 - L1MC2 LINE L1 -10 6334 6202 2104 130 0 7 chr1 278666960 278667259 -3526405 + AluSg SINE Alu 1 297 -13 461 192 0 0 chr1 278667325 278667403 -3526261 - FLAM_A SINE Alu -56 86 9 21 57 0 0 chr1 278667835 278667870 -3525794 + AT_rich Low_complexity Low_complexity 1 35 0 683 206 0 28 chr1 278668031 278668172 -3525492 + FRAM SINE Alu 1 137 -39 2161 133 123 5 chr1 278668188 278668571 -3525093 - MSTA LTR MaLR 0 428 1 192 239 239 11 chr1 278669871 278669959 -3523705 + MIR SINE MIR 84 191 -71 1138 209 18 0 chr1 278670465 278670685 -3522979 + MER58A DNA MER1_type 1 224 0 369 303 99 0 chr1 278670724 278670876 -3522788 + MIR SINE MIR 32 198 -64 2046 158 0 0 chr1 278671455 278671759 -3521905 + AluSx SINE Alu 1 304 -8 2414 64 3 3 chr1 278671966 278672263 -3521401 + AluY SINE Alu 1 297 -14 929 181 0 0 chr1 278672266 278672415 -3521249 + AluSg/x SINE Alu 144 292 -20 296 211 84 0 chr1 278672454 278672525 -3521139 - Zaphod DNA AcHobo -3954 77 1 332 317 70 7 chr1 278672529 278672671 -3520993 + MLT1K LTR MaLR 435 585 -3 198 0 0 0 chr1 278673003 278673025 -3520639 + (T)n Simple_repeat Simple_repeat 1 22 0 3086 229 40 20 chr1 278673043 278673132 -3520532 + L1 LINE L1 4330 4416 -1730 2145 100 31 0 chr1 278673132 278673422 -3520242 + AluSq SINE Alu 1 299 -14 3086 229 40 20 chr1 278673422 278674112 -3519552 + L1 LINE L1 4416 5124 -1022 882 136 5 127 chr1 278674117 278674337 -3519327 + 7SK RNA RNA 1 193 0 492 99 0 0 chr1 278674430 278674501 -3519163 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 813 204 4 75 chr1 278674501 278674727 -3518937 + L1 LINE L1 5127 5336 -810 637 231 0 8 chr1 278674728 278674858 -3518806 + FLAM_A SINE Alu 5 133 0 3886 168 65 32 chr1 278674865 278675650 -3518014 + L1MB2 LINE L1 5263 6073 -98 251 29 0 0 chr1 278675650 278675684 -3517980 + AluSp/q SINE Alu 261 294 -9 2158 119 3 7 chr1 278675896 278676206 -3517458 - AluSg SINE Alu -1 309 1 2028 112 4 0 chr1 278676242 278676518 -3517146 - AluSx SINE Alu -14 298 22 367 256 0 12 chr1 278676564 278676650 -3517014 - MLT1E LTR MaLR -508 85 1 280 93 0 0 chr1 278677108 278677151 -3516513 - L1MA3 LINE L1 0 6305 6263 459 245 95 0 chr1 278677208 278677355 -3516309 - L1MC5 LINE L1 -525 7436 7276 6145 156 25 39 chr1 278677706 278678928 -3514736 + L1 LINE L1 4096 5301 -845 2186 117 0 0 chr1 278678931 278679261 -3514403 + AluSx SINE Alu 1 330 0 370 278 128 43 chr1 278679357 278679591 -3514073 - L3 LINE CR1 -915 662 409 436 288 75 6 chr1 278679656 278679816 -3513848 + MIR SINE MIR 48 218 -44 2261 74 4 0 chr1 278680482 278680790 -3512874 - AluSg SINE Alu 0 318 10 204 40 0 0 chr1 278681142 278681167 -3512497 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2140 126 0 0 chr1 278681168 278681453 -3512211 - AluSx SINE Alu -27 285 1 2164 132 0 0 chr1 278681667 278681962 -3511702 + AluJo SINE Alu 1 295 -17 1047 168 15 35 chr1 278681962 278682165 -3511499 - AluJo SINE Alu -113 199 1 1832 170 3 10 chr1 278682303 278682787 -3510877 + AluJb SINE Alu 1 482 0 561 254 31 47 chr1 278683686 278683879 -3509785 - MIR SINE MIR -26 236 47 186 316 20 20 chr1 278683973 278684071 -3509593 + MIR SINE MIR 159 256 -6 211 204 0 41 chr1 278684408 278684457 -3509207 + (CATATA)n Simple_repeat Simple_repeat 6 52 0 524 158 0 0 chr1 278685101 278685183 -3508481 + U6 snRNA snRNA 26 107 0 1086 61 8 0 chr1 278685198 278685330 -3508334 + AluSq/x SINE Alu 1 133 -180 2345 85 0 16 chr1 278685333 278685638 -3508026 + AluSx SINE Alu 1 300 -12 274 314 224 9 chr1 278685789 278685999 -3507665 + MIR SINE MIR 6 260 -2 2367 113 0 0 chr1 278686618 278686929 -3506735 + AluSp SINE Alu 1 311 -2 838 118 0 22 chr1 278687006 278687141 -3506523 + FLAM_C SINE Alu 2 133 0 2094 98 10 39 chr1 278687616 278687960 -3505704 - AluSx SINE Alu 0 312 1 1914 142 7 17 chr1 278688225 278688520 -3505144 - AluJo SINE Alu -20 292 1 1634 192 22 0 chr1 278688520 278688843 -3504821 - L1MB7 LINE L1 -43 6141 5812 911 168 7 7 chr1 278689679 278689828 -3503836 - FRAM SINE Alu -26 150 2 3194 148 83 9 chr1 278690211 278690786 -3502878 + LTR26E LTR ERV1 4 621 -1 565 185 19 0 chr1 278690843 278690951 -3502713 - L1MB7 LINE L1 -379 5799 5690 1226 103 6 0 chr1 278691509 278691684 -3501980 - MER41B LTR ERV1 0 635 460 2482 42 3 0 chr1 278691684 278691967 -3501697 - AluY SINE Alu -11 300 17 507 61 0 0 chr1 278691967 278692033 -3501631 - Alu SINE Alu -242 67 2 3215 89 45 0 chr1 278692034 278692482 -3501182 - MER41B LTR ERV1 -167 468 1 2324 106 0 0 chr1 278693113 278693424 -3500240 + AluSq SINE Alu 1 311 -2 239 235 0 0 chr1 278693519 278693570 -3500094 + L2 LINE L2 3219 3269 -3 1720 142 22 41 chr1 278693647 278693963 -3499701 + AluJo SINE Alu 3 312 0 248 257 92 37 chr1 278694238 278694510 -3499154 - L2 LINE L2 -1043 2271 1985 197 184 0 0 chr1 278694524 278694562 -3499102 + MIR SINE MIR 212 249 -13 450 283 131 34 chr1 278694625 278694862 -3498802 + HAL1 LINE L1 2243 2502 -5 956 133 6 46 chr1 278694862 278695035 -3498629 - FRAM SINE Alu 0 166 1 556 153 0 0 chr1 278695915 278696000 -3497664 + FLAM_A SINE Alu 47 131 -11 408 88 0 0 chr1 278696000 278696020 -3497644 + (TG)n Simple_repeat Simple_repeat 1 77 0 408 88 0 0 chr1 278696020 278696077 -3497587 + (TG)n Simple_repeat Simple_repeat 2 58 0 908 173 13 6 chr1 278696089 278696283 -3497381 + AluJb SINE Alu 125 319 0 695 178 65 121 chr1 278696425 278696770 -3496894 - MLT1C LTR MaLR -90 377 53 1332 190 92 12 chr1 278696770 278697096 -3496568 + MLT1A1 LTR MaLR 2 353 -12 2296 107 0 7 chr1 278698224 278698533 -3495131 + AluSx SINE Alu 1 307 -5 247 209 146 18 chr1 278699126 278699236 -3494428 + L2 LINE L2 2419 2542 -772 1611 170 30 9 chr1 278699237 278699567 -3494097 + L1MB3 LINE L1 5843 6179 -4 1071 153 6 0 chr1 278699624 278699787 -3493877 - U1 snRNA snRNA -1 164 1 855 258 136 38 chr1 278699930 278700607 -3493057 + L2 LINE L2 2560 3309 -4 258 200 0 20 chr1 278700640 278700690 -3492974 - LTR33A LTR ERVL -16 507 459 6843 116 33 18 chr1 278700707 278701539 -3492125 - L1MA1 LINE L1 -4 6298 5480 2235 116 6 3 chr1 278701539 278701850 -3491814 - AluSx SINE Alu 0 312 1 6843 116 33 18 chr1 278701850 278702266 -3491398 - L1MA1 LINE L1 -822 5480 5016 4315 83 5 0 chr1 278702266 278702817 -3490847 + MER41A LTR ERV1 1 554 0 6843 116 33 18 chr1 278702817 278703151 -3490513 - L1MA1 LINE L1 -1286 5016 4689 689 252 66 58 chr1 278703774 278703868 -3489796 - MIR SINE MIR -16 246 154 2146 131 0 0 chr1 278703868 278704184 -3489480 - AluSx SINE Alu 0 316 1 689 252 66 58 chr1 278704184 278704329 -3489335 - MIR SINE MIR -108 154 3 335 143 0 0 chr1 278705266 278705322 -3488342 + AluSp/q SINE Alu 248 303 0 2174 115 3 3 chr1 278705396 278705692 -3487972 - AluSx SINE Alu -16 296 1 517 321 42 0 chr1 278705863 278706031 -3487633 - MIR SINE MIR -87 175 1 198 0 0 0 chr1 278706175 278706197 -3487467 + (A)n Simple_repeat Simple_repeat 1 22 0 2190 105 6 35 chr1 278706408 278706722 -3486942 - AluSx SINE Alu -7 305 1 228 316 59 29 chr1 278706815 278706951 -3486713 - L2 LINE L2 -3 3310 3171 1117 140 0 18 chr1 278707148 278707319 -3486345 + FRAM SINE Alu 1 160 -16 396 240 103 52 chr1 278707385 278707476 -3486188 + L1ME4a LINE L1 5712 5797 -324 531 45 11 102 chr1 278707476 278707515 -3486149 + MADE1 DNA Mariner 1 29 -51 2355 113 0 0 chr1 278707515 278707817 -3485847 - AluSx SINE Alu -10 302 1 531 45 11 102 chr1 278707817 278707865 -3485799 + MADE1 DNA Mariner 29 80 0 396 240 103 52 chr1 278707865 278708044 -3485620 + L1ME4a LINE L1 5797 5996 -125 485 191 130 26 chr1 278708080 278708195 -3485469 + MER5A DNA MER1_type 31 157 -32 1613 126 56 30 chr1 278708195 278708465 -3485199 - AluSq SINE Alu -7 306 30 1980 217 170 49 chr1 278708469 278708681 -3484983 - L1MCb LINE L1 -4951 1094 909 1467 133 5 0 chr1 278708681 278708892 -3484772 - AluSx SINE Alu -100 212 1 1980 217 170 49 chr1 278708892 278709655 -3484009 - L1MCb LINE L1 -5136 909 190 578 291 6 0 chr1 278709700 278709865 -3483799 + MIR SINE MIR 94 259 -3 2073 108 0 4 chr1 278710096 278710373 -3483291 - AluSx SINE Alu -36 276 1 265 217 14 14 chr1 278710521 278710590 -3483074 + L2 LINE L2 2291 2359 -955 246 289 7 28 chr1 278710998 278711140 -3482524 + GA-rich Low_complexity Low_complexity 2 140 0 1230 229 12 17 chr1 278711335 278711575 -3482089 + AluSc SINE Alu 43 281 -28 21 0 0 0 chr1 278711575 278711596 -3482068 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr1 278711596 278711619 -3482045 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1280 80 25 171 chr1 278711817 278711940 -3481724 + L1P4 LINE L1 5360 5419 -747 2291 93 3 0 chr1 278711940 278712229 -3481435 - AluSc SINE Alu -14 295 6 1280 80 25 171 chr1 278712229 278712391 -3481273 + L1P4 LINE L1 5419 5603 -563 2429 90 3 0 chr1 278712398 278712709 -3480955 + AluSx SINE Alu 1 312 0 953 166 6 0 chr1 278713021 278713184 -3480480 - L1PA16 LINE L1 -9 6157 5994 2719 128 2 7 chr1 278713215 278713629 -3480035 - L1PA16 LINE L1 -156 6010 5599 583 176 0 0 chr1 278713629 278713720 -3479944 - AluSg/x SINE Alu -10 300 210 1019 100 14 0 chr1 278713721 278713861 -3479803 + AluSg/x SINE Alu 155 296 -14 632 192 138 6 chr1 278714137 278714304 -3479360 - MIR SINE MIR -61 201 13 326 145 0 0 chr1 278714527 278714590 -3479074 + Alu SINE Alu 1 48 -252 1152 145 0 0 chr1 278714591 278714750 -3478914 - AluSx SINE Alu -153 159 1 535 188 100 56 chr1 278714761 278714841 -3478823 - MER104 DNA Tc2 -1731 167 92 1831 157 7 7 chr1 278714841 278715150 -3478514 + AluJb SINE Alu 1 309 0 535 188 100 56 chr1 278715150 278715227 -3478437 - MER104 DNA Tc2 -1806 92 1 182 422 55 8 chr1 278715296 278715424 -3478240 + L2 LINE L2 3116 3249 -23 2296 103 0 3 chr1 278715617 278715919 -3477745 + AluSg SINE Alu 3 303 -7 1304 115 0 0 chr1 278715919 278716093 -3477571 + AluSc SINE Alu 132 305 -4 2450 96 0 0 chr1 278716491 278716803 -3476861 - AluSx SINE Alu 0 312 1 2343 113 0 0 chr1 278716924 278717225 -3476439 - AluSx SINE Alu -11 301 1 693 125 37 81 chr1 278717246 278717382 -3476282 - AluJo SINE Alu -178 134 5 1899 133 25 0 chr1 278717655 278717933 -3475731 + AluSx SINE Alu 1 285 -27 186 43 0 0 chr1 278717938 278717961 -3475703 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2169 131 3 0 chr1 278718291 278718654 -3475010 + AluSq SINE Alu 1 364 0 402 208 10 10 chr1 278718792 278718893 -3474771 - AluSg1 SINE Alu -208 101 1 1100 81 0 0 chr1 278768929 278769078 -3424586 + AluSp/q SINE Alu 156 304 -9 320 246 0 0 chr1 278769201 278769266 -3424398 - L2 LINE L2 -22 3250 3186 804 182 0 8 chr1 278769417 278769549 -3424115 - FLAM_A SINE Alu -2 131 1 265 284 97 45 chr1 278769898 278770032 -3423632 + HAL1 LINE L1 1 141 -2366 451 231 197 45 chr1 278770291 278770501 -3423163 - MIR SINE MIR -14 248 10 393 242 11 11 chr1 278770729 278770820 -3422844 - MIR SINE MIR -109 153 63 258 323 75 15 chr1 278770879 278771012 -3422652 - L2 LINE L2 0 3313 3173 945 175 52 93 chr1 278771442 278771611 -3422053 + L1MB7 LINE L1 5800 5954 -230 2143 96 7 3 chr1 278771611 278771913 -3421751 - AluSx SINE Alu -9 303 1 945 175 52 93 chr1 278771913 278772034 -3421630 + L1MB7 LINE L1 5954 6078 -106 458 147 27 82 chr1 278772058 278772181 -3421483 + L1MB4 LINE L1 6061 6177 -6 2250 84 3 0 chr1 278772181 278772468 -3421196 - AluSq SINE Alu -25 288 1 325 157 11 121 chr1 278772476 278772516 -3421148 - L1MB5 LINE L1 0 6180 6137 2429 65 13 0 chr1 278772516 278772822 -3420842 - AluSp SINE Alu -3 310 1 325 157 11 121 chr1 278772822 278772884 -3420780 - L1MB5 LINE L1 -43 6137 6080 675 192 17 0 chr1 278775091 278775211 -3418453 - AluJb SINE Alu -190 122 1 2151 116 0 0 chr1 278775249 278775543 -3418121 - AluSx SINE Alu -18 294 1 1411 119 64 16 chr1 278775655 278775906 -3417758 - AluJo SINE Alu -8 304 42 442 360 37 24 chr1 278775983 278776311 -3417353 + L2 LINE L2 1592 1923 -1391 642 243 23 42 chr1 278776359 278776573 -3417091 - L1MC5 LINE L1 -51 7910 7701 1972 103 0 7 chr1 278776731 278777021 -3416643 - AluSx SINE Alu -24 288 1 361 323 56 36 chr1 278777371 278777566 -3416098 - L1MC5 LINE L1 0 7961 7763 345 225 7 94 chr1 278777644 278777782 -3415882 + FLAM_C SINE Alu 1 126 -7 1647 129 0 46 chr1 278778082 278778362 -3415302 - AluSq SINE Alu -44 269 3 234 169 34 0 chr1 278778734 278778823 -3414841 + (TA)n Simple_repeat Simple_repeat 1 92 0 1581 152 67 0 chr1 278778823 278779106 -3414558 - AluJb SINE Alu -10 302 1 539 237 124 67 chr1 278779243 278779283 -3414381 - HAL1 LINE L1 -39 2468 2432 2233 112 0 0 chr1 278779283 278779588 -3414076 + AluSx SINE Alu 1 305 -7 539 237 124 67 chr1 278779588 278779830 -3413834 - HAL1 LINE L1 -75 2432 2170 2549 145 24 63 chr1 278779941 278780096 -3413568 - L1MB7 LINE L1 -314 5870 5710 1983 119 3 7 chr1 278780096 278780391 -3413273 - AluSx SINE Alu -18 294 1 2549 145 24 63 chr1 278780391 278780773 -3412891 - L1MB7 LINE L1 -474 5710 5354 733 183 0 8 chr1 278780812 278780943 -3412721 + FLAM_A SINE Alu 4 133 0 2039 94 24 0 chr1 278781182 278781470 -3412194 + AluSq SINE Alu 11 305 -8 381 208 32 96 chr1 278781627 278781666 -3411998 + L1ME LINE L1 5595 5635 -486 1925 154 3 0 chr1 278781666 278781977 -3411687 - AluJb SINE Alu 0 312 1 381 208 32 96 chr1 278781977 278782062 -3411602 + L1ME LINE L1 5635 5711 -410 2099 100 7 0 chr1 278782218 278782509 -3411155 - AluSx SINE Alu -19 293 1 251 280 13 83 chr1 278782675 278782832 -3410832 + LTR67 LTR ERVL 412 557 0 440 299 194 63 chr1 278782943 278782993 -3410671 + L1MC/D LINE L1 2676 2718 -3428 2253 87 0 7 chr1 278782993 278783292 -3410372 - AluSx SINE Alu -15 297 1 440 299 194 63 chr1 278783292 278783730 -3409934 + L1MC/D LINE L1 2718 3228 -2918 373 288 115 45 chr1 278783721 278784026 -3409638 + L1MC/D LINE L1 4980 5309 -837 * 1836 124 8 0 chr1 278784026 278784292 -3409372 - AluSx SINE Alu -13 299 32 286 248 89 8 chr1 278784312 278784436 -3409228 + L1MC/D LINE L1 5327 5463 -701 931 119 6 85 chr1 278784445 278784622 -3409042 - AluJo SINE Alu -30 282 120 626 132 7 111 chr1 278784627 278784801 -3408863 - FLAM_C SINE Alu 0 163 5 650 261 38 45 chr1 278784811 278785098 -3408566 + L1MC/D LINE L1 5468 5752 -2056 2107 54 4 7 chr1 278785100 278785379 -3408285 + AluSc SINE Alu 1 278 -31 399 83 0 0 chr1 278785733 278785793 -3407871 + (TG)n Simple_repeat Simple_repeat 2 61 0 2514 37 0 0 chr1 278785827 278786122 -3407542 + AluY SINE Alu 1 295 -16 342 195 0 58 chr1 278786586 278786673 -3406991 - HAL1 LINE L1 0 2507 2426 1055 157 16 32 chr1 278786677 278786857 -3406807 + MLT1G1 LTR MaLR 1 177 -418 310 111 0 0 chr1 278786857 278786902 -3406762 - MLT2B1 LTR ERVL 0 520 476 1534 167 3 31 chr1 278786920 278787213 -3406451 - AluJb SINE Alu -22 290 6 2338 85 0 3 chr1 278787239 278787545 -3406119 - AluSq SINE Alu -8 305 1 1983 245 162 52 chr1 278787571 278788062 -3405602 - HAL1 LINE L1 -293 2214 1778 2147 91 0 3 chr1 278788062 278788359 -3405305 - AluSg SINE Alu -14 296 1 1983 245 162 52 chr1 278788359 278788600 -3405064 - HAL1 LINE L1 -729 1778 1565 1770 159 3 0 chr1 278788600 278788902 -3404762 - AluJb SINE Alu -9 303 1 1983 245 162 52 chr1 278788902 278789049 -3404615 - HAL1 LINE L1 -942 1565 1436 2125 94 3 3 chr1 278789049 278789336 -3404328 + AluSq SINE Alu 1 287 -26 180 0 0 0 chr1 278789336 278789356 -3404308 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1983 245 162 52 chr1 278789356 278789454 -3404210 - HAL1 LINE L1 -1070 1437 1126 399 316 76 44 chr1 278789479 278789729 -3403935 - HAL1 LINE L1 -1507 1000 743 570 186 0 90 chr1 278789754 278789770 -3403894 - FLAM_C SINE Alu -170 132 116 2127 116 3 3 chr1 278789770 278790080 -3403584 - AluSx SINE Alu 0 312 3 261 0 0 0 chr1 278790081 278790110 -3403554 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 570 186 0 90 chr1 278790110 278790236 -3403428 - FLAM_C SINE Alu -185 117 1 295 284 53 91 chr1 278790353 278790596 -3403068 - HAL1 LINE L1 -1954 553 320 771 149 0 8 chr1 278791538 278791672 -3401992 + FLAM_C SINE Alu 1 133 0 1122 227 20 8 chr1 278791694 278791941 -3401723 + L1PA16 LINE L1 5893 6142 -24 2253 70 7 13 chr1 278791943 278792243 -3401421 - AluSc SINE Alu -11 298 1 25 0 0 0 chr1 278792244 278792269 -3401395 + AT_rich Low_complexity Low_complexity 1 25 0 409 257 18 0 chr1 278792275 278792384 -3401280 - MER103 DNA DNA -1 165 55 1924 152 53 39 chr1 278792682 278793097 -3400567 - L1MC1 LINE L1 0 6333 5913 854 183 25 113 chr1 278793219 278793306 -3400358 - MER20 DNA MER1_type 0 219 126 2202 84 0 3 chr1 278793306 278793603 -3400061 - AluSg SINE Alu -14 296 1 854 183 25 113 chr1 278793603 278793755 -3399909 - MER20 DNA MER1_type -93 126 1 2329 92 0 0 chr1 278793857 278794162 -3399502 + AluSx SINE Alu 1 305 -7 244 132 75 38 chr1 278794539 278794560 -3399104 + AluSp SINE Alu 115 137 -166 1344 96 5 4 chr1 278794560 278794781 -3398883 + AluSp SINE Alu 2 313 0 1840 144 10 3 chr1 278794789 278795081 -3398583 + AluSx SINE Alu 1 294 -18 1391 188 36 39 chr1 278795163 278795472 -3398192 + AluJo SINE Alu 1 308 -4 183 286 199 37 chr1 278795608 278795769 -3397895 + L2 LINE L2 2790 2976 -338 1102 162 32 9 chr1 278795797 278796008 -3397656 - MLT1A1 LTR MaLR -1 364 148 1942 73 26 43 chr1 278796008 278796172 -3397492 - AluSq SINE Alu -14 299 141 1901 49 11 19 chr1 278796172 278796436 -3397228 - AluY SINE Alu -12 299 38 1942 73 26 43 chr1 278796436 278796573 -3397091 - AluSq SINE Alu -172 141 3 1064 142 6 0 chr1 278796738 278796914 -3396750 + AluSq SINE Alu 121 297 -16 563 183 0 42 chr1 278796916 278797036 -3396628 - L1MA10 LINE L1 -44 6290 6176 2019 81 35 26 chr1 278797050 278797360 -3396304 - AluSp SINE Alu 0 313 1 2315 75 7 0 chr1 278797373 278797680 -3395984 - AluY SINE Alu -2 309 1 2186 87 7 0 chr1 278797680 278797980 -3395684 - AluSq SINE Alu -8 305 4 235 179 164 112 chr1 278797992 278798067 -3395597 - L1MB1 LINE L1 -3 6186 6116 1720 172 13 0 chr1 278798067 278798375 -3395289 - AluJb SINE Alu 0 312 1 235 179 164 112 chr1 278798375 278798433 -3395231 - L1MB1 LINE L1 -73 6116 6046 251 237 53 26 chr1 278798982 278799058 -3394606 + MIR3 SINE MIR 116 193 -15 2081 111 13 3 chr1 278800799 278801097 -3392567 - AluSx SINE Alu -11 301 1 2117 89 14 0 chr1 278801145 278801445 -3392219 - AluSx SINE Alu 0 304 1 514 174 99 181 chr1 278801452 278801842 -3391822 - L1MC5 LINE L1 -492 7469 7116 2163 108 7 0 chr1 278801842 278802149 -3391515 + AluSp SINE Alu 1 309 -4 514 174 99 181 chr1 278802149 278802190 -3391474 - L1MC5 LINE L1 -845 7116 7073 750 176 15 15 chr1 278802194 278802325 -3391339 + FLAM_C SINE Alu 3 133 0 379 183 29 22 chr1 278802328 278802465 -3391199 + GA-rich Low_complexity Low_complexity 2 139 0 489 208 17 25 chr1 278802465 278802585 -3391079 - L1MC5 LINE L1 -881 7080 6962 346 240 31 113 chr1 278802625 278802829 -3390835 - L1MC5 LINE L1 -815 6993 6795 24 32 0 0 chr1 278802851 278802882 -3390782 + AT_rich Low_complexity Low_complexity 1 31 0 1985 113 30 3 chr1 278802972 278803273 -3390391 - AluSg SINE Alu -1 309 1 464 236 19 0 chr1 278803274 278803380 -3390284 - L1MC4 LINE L1 -1232 6810 6703 2092 100 0 10 chr1 278803473 278803773 -3389891 - AluSx SINE Alu -15 297 1 374 229 0 9 chr1 278803940 278804040 -3389624 + L1ME3A LINE L1 5842 5941 -225 2119 104 10 7 chr1 278804040 278804337 -3389327 + AluSx SINE Alu 1 298 -14 847 147 0 0 chr1 278804449 278804578 -3389086 + AluSg/x SINE Alu 184 312 0 188 119 0 24 chr1 278804584 278804626 -3389038 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 * 461 229 139 0 chr1 278804609 278804800 -3388864 + L1ME3A LINE L1 5928 6162 -8 2153 119 0 3 chr1 278804866 278805168 -3388496 - AluSx SINE Alu -11 301 1 2136 118 3 83 chr1 278805225 278805588 -3388076 + MER7A DNA MER2_type 1 332 -14 1651 164 28 14 chr1 278805588 278805875 -3387789 + AluJb SINE Alu 12 302 -10 2026 109 24 0 chr1 278806140 278806433 -3387231 - AluSp SINE Alu -13 300 1 238 236 0 0 chr1 278806436 278806491 -3387173 - MIR SINE MIR -54 208 154 1861 148 10 3 chr1 278807261 278807559 -3386105 - AluSx SINE Alu -12 300 1 725 168 0 34 chr1 278807559 278807678 -3385986 - FLAM_C SINE Alu -9 134 20 2096 146 3 3 chr1 278810030 278810339 -3383325 + AluSx SINE Alu 1 309 -3 31 26 0 0 chr1 278812793 278812831 -3380833 + AT_rich Low_complexity Low_complexity 1 38 0 1027 108 0 0 chr1 278816467 278816597 -3377067 + FLAM_C SINE Alu 1 130 -3 2154 96 3 30 chr1 278821115 278821418 -3372246 - AluSg SINE Alu -15 295 1 2382 78 7 3 chr1 278821838 278822134 -3371530 + AluSx SINE Alu 3 299 -13 989 205 120 15 chr1 278822557 278822816 -3370848 - MER2 DNA MER2_type -2 343 58 2276 96 0 23 chr1 278822959 278823262 -3370402 - AluSx SINE Alu -15 297 2 21 0 0 0 chr1 278823836 278823857 -3369807 + AT_rich Low_complexity Low_complexity 1 21 0 267 178 170 89 chr1 278825034 278825169 -3368495 - L1ME2 LINE L1 -194 5970 5825 188 292 62 0 chr1 278826537 278826585 -3367079 + L3b LINE CR1 1522 1572 -11 24 32 0 0 chr1 278827405 278827436 -3366228 + AT_rich Low_complexity Low_complexity 1 31 0 956 336 181 48 chr1 278828296 278828488 -3365176 + L2 LINE L2 1466 1631 -1683 2081 107 17 10 chr1 278828488 278828778 -3364886 + AluSx SINE Alu 1 292 -20 956 336 181 48 chr1 278828778 278829567 -3364097 + L2 LINE L2 1631 2578 -736 197 305 288 0 chr1 278829720 278829897 -3363767 + L2 LINE L2 2737 2964 -350 464 228 118 0 chr1 278829925 278830052 -3363612 + L2 LINE L2 3172 3313 0 214 297 68 57 chr1 278831240 278831432 -3362232 - L2 LINE L2 -523 2791 2598 242 232 29 0 chr1 278831960 278832029 -3361635 + (CCCCG)n Simple_repeat Simple_repeat 2 72 0 1983 91 7 0 chr1 278833224 278833500 -3360164 + AluSg SINE Alu 2 279 -31 2353 97 0 10 chr1 278833853 278834164 -3359500 - AluSx SINE Alu -4 308 1 809 121 0 100 chr1 278834337 278834477 -3359187 - AluJb SINE Alu -186 126 1 2273 92 14 0 chr1 278834504 278834798 -3358866 + AluSp SINE Alu 1 298 -15 670 146 0 0 chr1 278835421 278835524 -3358140 + MLT1B LTR MaLR 3 105 -285 2208 116 0 0 chr1 278835524 278835817 -3357847 - AluSx SINE Alu -19 293 1 522 183 103 71 chr1 278836364 278836490 -3357174 + FLAM_C SINE Alu 2 131 -2 2152 100 0 4 chr1 278836496 278836777 -3356887 + AluSg SINE Alu 1 280 -30 1988 145 3 0 chr1 278837046 278837367 -3356297 + AluSx SINE Alu 1 312 0 1965 183 91 62 chr1 278837408 278837894 -3355770 - MLT1D LTR MaLR 0 505 6 596 216 150 40 chr1 278837918 278838093 -3355571 - MER112 DNA MER1_type -4 252 45 2444 94 0 0 chr1 278838093 278838400 -3355264 - AluSc SINE Alu -2 307 1 596 216 150 40 chr1 278838400 278838451 -3355213 - MER112 DNA MER1_type -211 45 1 778 259 30 57 chr1 278838500 278838762 -3354902 - MIR SINE MIR -2 260 6 942 117 0 36 chr1 278838874 278839032 -3354632 + FLAM_C SINE Alu 1 163 -317 2226 119 3 0 chr1 278839032 278839343 -3354321 + AluSx SINE Alu 1 312 0 942 117 0 36 chr1 278839343 278839359 -3354305 + FLAM_C SINE Alu 163 480 0 2681 116 6 3 chr1 278839691 278840053 -3353611 - THE1B LTR MaLR 0 364 2 748 261 26 15 chr1 278840396 278840591 -3353073 - MIR SINE MIR -39 223 27 1148 113 0 70 chr1 278840595 278840780 -3352884 - AluSq SINE Alu -141 172 1 1067 161 146 117 chr1 278840935 278841319 -3352345 - MSTD LTR MaLR 0 396 2 2192 120 13 0 chr1 278841412 278841749 -3351915 - AluSx SINE Alu 0 341 1 2392 90 0 10 chr1 278842268 278842580 -3351084 + AluSx SINE Alu 1 309 -3 1970 83 0 0 chr1 278843009 278843249 -3350415 - AluSc SINE Alu -58 251 12 331 132 0 0 chr1 278843249 278843302 -3350362 - L1MB4 LINE L1 0 6180 6128 22 35 0 0 chr1 278843302 278843331 -3350333 + AT_rich Low_complexity Low_complexity 1 29 0 806 152 7 7 chr1 278843354 278843499 -3350165 - L1MB3 LINE L1 -42 6141 5997 2203 99 20 20 chr1 278843509 278843811 -3349853 - AluSq SINE Alu -11 302 1 235 253 42 53 chr1 278843828 278843923 -3349741 - L2 LINE L2 -2 3270 3177 1431 136 62 44 chr1 278843949 278844245 -3349419 + AluJb SINE Alu 5 305 0 633 65 0 65 chr1 278844881 278844973 -3348691 + AluJ/FLAM SINE Alu 2 87 -225 935 105 8 8 chr1 278845102 278845235 -3348429 - AluJb SINE Alu -179 133 1 253 119 24 0 chr1 278845235 278845277 -3348387 + L1MA10 LINE L1 6282 6324 -10 214 221 116 77 chr1 278845289 278845421 -3348243 - L2 LINE L2 -410 2904 2762 1524 189 101 21 chr1 278845421 278845759 -3347905 + MLT1A1 LTR MaLR 1 365 0 214 221 116 77 chr1 278845759 278845807 -3347857 - L2 LINE L2 -552 2762 2717 1813 110 0 4 chr1 278845882 278846127 -3347537 - AluSq SINE Alu -59 254 11 1042 135 0 0 chr1 278846128 278846269 -3347395 - AluSq/x SINE Alu -171 141 1 487 277 157 0 chr1 278846523 278846689 -3346975 + MIR SINE MIR 64 255 -7 1854 117 55 0 chr1 278846737 278847010 -3346654 + AluSx SINE Alu 1 288 -24 1367 171 12 92 chr1 278847165 278847285 -3346379 + AluJo SINE Alu 1 129 -183 207 0 0 0 chr1 278847285 278847308 -3346356 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1367 171 12 92 chr1 278847308 278847425 -3346239 + AluJo SINE Alu 129 208 -104 2038 123 7 7 chr1 278847425 278847717 -3345947 + AluSx SINE Alu 1 292 -20 1367 171 12 92 chr1 278847717 278847806 -3345858 + AluJo SINE Alu 208 302 -10 438 274 7 68 chr1 278847816 278847926 -3345738 + MIR3 SINE MIR 45 145 -63 1825 164 13 10 chr1 278847926 278848230 -3345434 + AluJo SINE Alu 1 305 -7 438 274 7 68 chr1 278848230 278848265 -3345399 + MIR3 SINE MIR 145 181 -27 2429 66 0 13 chr1 278848427 278848728 -3344936 - AluY SINE Alu -14 297 1 794 149 25 8 chr1 278848850 278848971 -3344693 - FLAM_A SINE Alu -10 123 1 2225 99 0 0 chr1 278849460 278849791 -3343873 - AluSx SINE Alu 0 331 1 1927 140 0 34 chr1 278849810 278850131 -3343533 - AluJb SINE Alu -2 310 1 2215 108 0 3 chr1 278850437 278850733 -3342931 + AluSx SINE Alu 1 295 -17 842 177 144 0 chr1 278850837 278851018 -3342646 - MER3 DNA MER1_type -2 207 1 278 268 32 8 chr1 278851147 278851270 -3342394 + (TA)n Simple_repeat Simple_repeat 1 126 0 416 349 53 0 chr1 278851289 278851421 -3342243 - L2 LINE L2 0 3272 3134 615 265 126 5 chr1 278851921 278852136 -3341528 - MIR SINE MIR -2 260 20 2544 77 0 0 chr1 278852174 278852484 -3341180 + AluY SINE Alu 1 310 -1 297 316 108 38 chr1 278852646 278853003 -3340661 - L2 LINE L2 -220 3052 2670 2298 105 0 3 chr1 278853403 278853707 -3339957 + AluSx SINE Alu 1 303 -9 2096 127 3 0 chr1 278853923 278854223 -3339441 + AluSp SINE Alu 1 301 -12 235 0 0 0 chr1 278854729 278854755 -3338909 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1787 148 0 35 chr1 278854755 278855039 -3338625 - AluJo SINE Alu -1 309 11 934 129 0 34 chr1 278855155 278855302 -3338362 + FRAM SINE Alu 32 173 -3 205 252 75 177 chr1 278855308 278855415 -3338249 + L2 LINE L2 3018 3134 -138 2239 103 10 0 chr1 278855415 278855707 -3337957 - AluSq SINE Alu -18 295 1 205 252 75 177 chr1 278855707 278855881 -3337783 + L2 LINE L2 3134 3270 -2 195 278 91 33 chr1 278855914 278856034 -3337630 + MIR SINE MIR 65 144 -64 1333 188 24 24 chr1 278856110 278856425 -3337239 - AluJb SINE Alu 0 312 3 1617 83 5 0 chr1 278856434 278856651 -3337013 - AluSp SINE Alu -10 303 86 2101 88 10 14 chr1 278856795 278857117 -3336547 + AluSq SINE Alu 2 313 0 629 214 55 0 chr1 278857117 278857262 -3336402 - HAL1 LINE L1 -340 2167 2015 788 195 56 50 chr1 278857262 278857441 -3336223 - MER63A DNA MER1_type -8 202 44 260 262 25 66 chr1 278857470 278857592 -3336072 - HAL1 LINE L1 -499 2008 1892 1147 123 0 0 chr1 278857592 278857763 -3335901 - AluSg/x SINE Alu -5 305 135 505 266 146 60 chr1 278857763 278858030 -3335634 - HAL1 LINE L1 -605 1902 1613 496 247 102 52 chr1 278858086 278858458 -3335206 - L1MC4 LINE L1 -215 7827 7327 527 223 9 0 chr1 278858464 278858576 -3335088 + MER3 DNA MER1_type 56 168 -41 1520 139 71 42 chr1 278858585 278858965 -3334699 + MER3 DNA MER1_type 2234 2624 0 784 285 164 5 chr1 278858976 278859414 -3334250 - L1MC4 LINE L1 -547 7495 6988 2109 130 0 0 chr1 278859534 278859842 -3333822 + AluSx SINE Alu 1 308 -4 27 0 0 0 chr1 278860159 278860186 -3333478 + AT_rich Low_complexity Low_complexity 1 27 0 2125 93 7 13 chr1 278860388 278860690 -3332974 - AluSx SINE Alu -12 300 1 283 226 193 8 chr1 278860936 278861058 -3332606 + MIR SINE MIR 61 201 -61 180 354 71 20 chr1 278860991 278861090 -3332574 - MIR SINE MIR -91 171 68 * 2063 107 7 3 chr1 278861104 278861413 -3332251 - AluSx SINE Alu -2 310 1 2160 109 3 0 chr1 278861683 278861987 -3331677 - AluSc SINE Alu -4 305 1 2066 119 3 0 chr1 278861989 278862284 -3331380 - AluSx SINE Alu -16 296 1 819 97 0 0 chr1 278862294 278862408 -3331256 - AluSg/x SINE Alu -9 303 190 4191 89 5 0 chr1 278862411 278862962 -3330702 - MER41A LTR ERV1 0 554 1 10087 110 66 54 chr1 278862962 278863813 -3329851 - MER41A-int LTR ERV1 -2 5944 5105 229 107 0 125 chr1 278863813 278863869 -3329795 - SN5 Other centromeric -369 86 38 10087 110 66 54 chr1 278863869 278864202 -3329462 - MER41A-int LTR ERV1 -841 5105 4777 2422 60 0 3 chr1 278864202 278864502 -3329162 + AluY SINE Alu 1 299 -12 10087 110 66 54 chr1 278864502 278864921 -3328743 - MER41A-int LTR ERV1 -1169 4777 4364 2255 82 0 3 chr1 278864921 278865225 -3328439 - AluY SINE Alu -8 303 1 10087 110 66 54 chr1 278865225 278865548 -3328116 - MER41A-int LTR ERV1 -1582 4364 4046 2146 115 0 3 chr1 278865548 278865852 -3327812 - AluSx SINE Alu -9 303 1 10087 110 66 54 chr1 278865852 278866076 -3327588 - MER41A-int LTR ERV1 -1900 4046 3037 2298 103 63 32 chr1 278866085 278866545 -3327119 - MER41A-int LTR ERV1 -3922 3894 3450 2322 86 0 0 chr1 278866545 278866847 -3326817 - AluSg SINE Alu -8 302 1 2298 103 63 32 chr1 278866847 278867088 -3326576 - MER41A-int LTR ERV1 -4366 3450 1083 * 3084 90 9 42 chr1 278867078 278867510 -3326154 - MER41A-int LTR ERV1 -5326 620 203 1408 93 29 5 chr1 278867510 278867715 -3325949 - AluSq SINE Alu -7 306 97 1488 79 59 0 chr1 278867715 278867918 -3325746 - MER41A-int LTR ERV1 -7541 215 1 1081 106 0 0 chr1 278867958 278868139 -3325525 - AluSg/x SINE Alu 0 312 136 3845 90 14 34 chr1 278868201 278868615 -3325049 - MER41A LTR ERV1 0 554 152 2234 80 7 3 chr1 278868615 278868914 -3324750 - AluSx SINE Alu -12 300 1 3845 90 14 34 chr1 278868914 278869064 -3324600 - MER41A LTR ERV1 -402 152 1 1143 146 11 0 chr1 278869067 278869252 -3324412 - AluSx SINE Alu -125 187 1 421 129 165 12 chr1 278869416 278869501 -3324163 + MER4A LTR ERV1 1 98 -566 1575 130 169 82 chr1 278869501 278869869 -3323795 + MER4A LTR ERV1 261 660 -4 1107 113 0 0 chr1 278869869 278870029 -3323635 + FRAM SINE Alu 1 40 0 1741 93 0 0 chr1 278870045 278870270 -3323394 + AluSg SINE Alu 10 234 -76 312 214 83 48 chr1 278870286 278870370 -3323294 - L2 LINE L2 -26 3246 3160 1176 218 178 9 chr1 278870446 278870777 -3322887 + MLT1F1 LTR MaLR 176 562 -5 637 123 132 0 chr1 278871049 278871163 -3322501 - FLAM_A SINE Alu -4 138 10 374 244 43 9 chr1 278871272 278871387 -3322277 + L2 LINE L2 3153 3271 -1 917 239 19 5 chr1 278871453 278871658 -3322006 + MIR SINE MIR 34 241 -21 593 240 142 54 chr1 278871681 278871885 -3321779 + MIR SINE MIR 26 247 -15 1074 233 52 77 chr1 278872085 278872395 -3321269 - L1MC5 LINE L1 -52 7909 7593 1688 180 16 3 chr1 278872395 278872701 -3320963 - AluJo SINE Alu -2 310 1 1074 233 52 77 chr1 278872701 278872725 -3320939 - L1MC5 LINE L1 -368 7593 7570 561 173 72 0 chr1 278872725 278872864 -3320800 - L1MB3 LINE L1 -3 6180 6032 1074 233 52 77 chr1 278872864 278873090 -3320574 - L1MC5 LINE L1 -391 7570 7362 1250 174 92 71 chr1 278873120 278873534 -3320130 + L1MC5 LINE L1 6834 7254 -726 180 267 0 0 chr1 278874257 278874388 -3319276 + (CCTG)n Simple_repeat Simple_repeat 2 132 0 198 0 0 0 chr1 278874833 278874855 -3318809 + (TTA)n Simple_repeat Simple_repeat 1 22 0 2603 26 3 0 chr1 278874869 278875175 -3318489 - AluY SINE Alu -4 307 1 22 35 0 0 chr1 278875268 278875297 -3318367 + AT_rich Low_complexity Low_complexity 1 29 0 282 339 8 16 chr1 278877054 278877178 -3316486 - MIR3 SINE MIR -4 204 82 1845 123 3 46 chr1 278877525 278877849 -3315815 - AluSx SINE Alu -2 310 1 1477 95 189 8 chr1 278878305 278878548 -3315116 - AluSg1 SINE Alu -22 287 1 187 371 0 14 chr1 278878615 278878685 -3314979 - MER5A DNA MER1_type -7 182 114 1001 0 0 0 chr1 278878699 278878814 -3314850 - AluYa5/8 SINE Alu 0 311 197 1810 154 7 3 chr1 278878814 278879106 -3314558 - AluSx SINE Alu -19 293 1 222 224 17 35 chr1 278879133 278879191 -3314473 + MER5A DNA MER1_type 101 157 -32 904 135 0 0 chr1 278879504 278879637 -3314027 + FLAM_C SINE Alu 1 133 0 398 312 97 40 chr1 278879645 278880315 -3313349 + L1 LINE L1 3951 4658 -1488 187 309 60 48 chr1 278880387 278880471 -3313193 - MIR SINE MIR -65 197 113 1824 134 0 7 chr1 278880498 278880803 -3312861 + AluJb SINE Alu 1 303 0 2254 96 0 0 chr1 278881310 278881611 -3312053 + AluSc SINE Alu 1 301 -8 571 289 32 26 chr1 278881752 278881942 -3311722 - MIR SINE MIR 0 262 72 2210 101 0 0 chr1 278882304 278882602 -3311062 - AluSc SINE Alu -11 298 1 219 36 0 0 chr1 278883076 278883104 -3310560 + (TTG)n Simple_repeat Simple_repeat 3 30 0 920 109 8 0 chr1 278883109 278883237 -3310427 - AluSq/x SINE Alu -183 129 1 691 138 0 0 chr1 278883324 278883433 -3310231 - FLAM_C SINE Alu -33 110 2 1058 123 12 0 chr1 278883670 278883832 -3309832 - AluSg/x SINE Alu -14 296 133 1410 110 14 5 chr1 278884330 278884539 -3309125 - MER20 DNA MER1_type -4 215 5 2228 93 3 0 chr1 278884717 278885019 -3308645 - AluSx SINE Alu -9 303 1 372 254 130 16 chr1 278885125 278885272 -3308392 - MIR3 SINE MIR -57 151 3 1005 163 6 6 chr1 278885551 278885723 -3307941 - FAM SINE Alu -3 172 1 827 122 17 0 chr1 278885800 278885915 -3307749 + AluSq/x SINE Alu 3 119 -194 2314 80 0 0 chr1 278885934 278886233 -3307431 + AluSc SINE Alu 1 299 -10 856 123 158 53 chr1 278886234 278886319 -3307345 - MER30B DNA MER1_type -1 189 114 1930 123 10 17 chr1 278886319 278886620 -3307044 - AluSx SINE Alu -12 300 2 856 123 158 53 chr1 278886620 278886705 -3306959 - MER30B DNA MER1_type -76 114 1 1110 275 11 0 chr1 278886759 278887028 -3306636 - LTR16A LTR ERVL -25 425 154 1746 160 0 7 chr1 278887083 278887371 -3306293 + AluJo SINE Alu 15 300 -12 2187 108 0 0 chr1 278887440 278887737 -3305927 - AluSx SINE Alu -15 297 1 1517 142 25 3 chr1 278888823 278889105 -3304559 + AluSx SINE Alu 1 288 -24 2136 104 7 3 chr1 278890049 278890346 -3303318 + AluSx SINE Alu 1 298 -14 350 280 84 14 chr1 278890801 278890944 -3302720 - L1ME3A LINE L1 -8 6162 6010 516 133 204 0 chr1 278891060 278891158 -3302506 + FLAM_C SINE Alu 1 118 -15 2093 230 44 109 chr1 278891167 278891563 -3302101 - L1MC5 LINE L1 -424 7537 7117 2232 88 3 0 chr1 278891563 278891859 -3301805 - AluSc SINE Alu -9 300 4 2093 230 44 109 chr1 278891859 278892522 -3301142 - L1MC5 LINE L1 -844 7117 6544 733 101 0 0 chr1 278892799 278892908 -3300756 - AluSg/x SINE Alu -4 308 200 1416 225 36 0 chr1 278893008 278893364 -3300300 - L1M4 LINE L1 -1640 4506 4138 228 35 0 0 chr1 278893903 278893932 -3299732 + (CA)n Simple_repeat Simple_repeat 2 30 0 761 163 26 46 chr1 278894869 278895022 -3298642 + MER3 DNA MER1_type 1 150 -59 2179 84 0 0 chr1 278895043 278895328 -3298336 - AluSx SINE Alu -27 285 1 1590 146 20 34 chr1 278895354 278895648 -3298016 - AluJo SINE Alu -22 290 1 344 190 13 51 chr1 278895654 278895733 -3297931 - AluS SINE Alu -6 295 220 765 137 0 0 chr1 278895833 278895957 -3297707 + AluSg/x SINE Alu 188 311 -1 2512 46 0 0 chr1 278896011 278896317 -3297347 + AluY SINE Alu 1 306 -5 21 82 0 0 chr1 278896335 278896384 -3297280 + AT_rich Low_complexity Low_complexity 1 49 0 793 142 9 0 chr1 278896419 278896532 -3297132 + FLAM_C SINE Alu 2 115 -28 621 112 11 0 chr1 278896636 278896725 -3296939 + AluS SINE Alu 2 91 -222 2192 107 0 0 chr1 278897024 278897332 -3296332 - AluSx SINE Alu -4 308 1 716 160 15 128 chr1 278897332 278897426 -3296238 - L1M4 LINE L1 -696 5488 5385 735 182 25 0 chr1 278897426 278897547 -3296117 - FLAM_A SINE Alu -7 126 3 716 160 15 128 chr1 278897547 278897812 -3295852 - L1M4 LINE L1 -799 5385 5173 1734 156 0 13 chr1 278897816 278898117 -3295547 - AluJb SINE Alu -15 297 1 803 171 0 0 chr1 278898117 278898257 -3295407 - AluJb SINE Alu -13 299 160 3181 184 52 44 chr1 278898290 278899058 -3294606 - L1M4 LINE L1 -946 5200 4427 1443 163 4 0 chr1 278899159 278899404 -3294260 + AluSx SINE Alu 32 277 -35 255 173 0 77 chr1 278899406 278899458 -3294206 - MER3 DNA MER1_type -122 87 40 259 171 0 0 chr1 278899929 278899970 -3293694 - MER5B DNA MER1_type 0 178 138 231 219 0 0 chr1 278899976 278900017 -3293647 + MER5B DNA MER1_type 1 41 -137 581 170 0 155 chr1 278900023 278900223 -3293441 - MER5B DNA MER1_type 0 178 10 983 114 13 0 chr1 278900225 278900374 -3293290 - AluJb SINE Alu -161 151 1 383 145 0 58 chr1 278900374 278900443 -3293221 + MSTD LTR MaLR 332 396 0 21 0 0 0 chr1 278900640 278900661 -3293003 + AT_rich Low_complexity Low_complexity 1 21 0 2119 84 42 0 chr1 278900862 278901146 -3292518 - AluSx SINE Alu -16 296 1 201 381 48 24 chr1 278901159 278901327 -3292337 - L3b LINE CR1 -120 1463 1292 552 269 105 38 chr1 278901346 278901378 -3292286 + L1ME2 LINE L1 5767 5795 -369 1655 26 0 0 chr1 278901378 278901569 -3292095 + L1PA5 LINE L1 5961 6151 -3 552 269 105 38 chr1 278901569 278901908 -3291756 + L1ME2 LINE L1 5795 6163 -1 378 276 12 0 chr1 278901912 278902075 -3291589 + HAL1 LINE L1 2012 2176 -331 1342 208 10 20 chr1 278902125 278902428 -3291236 - AluJo SINE Alu -8 304 5 586 294 34 64 chr1 278902457 278902602 -3291062 - MIR SINE MIR 0 262 127 2132 112 3 0 chr1 278902602 278902906 -3290758 + AluSx SINE Alu 1 305 -7 586 294 34 64 chr1 278902906 278903025 -3290639 - MIR SINE MIR -135 127 6 3914 234 94 111 chr1 278903250 278903355 -3290309 - L2 LINE L2 -64 3249 3144 1979 142 7 0 chr1 278903355 278903650 -3290014 - AluSx SINE Alu -15 297 1 3914 234 94 111 chr1 278903650 278904393 -3289271 - L2 LINE L2 -169 3144 2390 2170 80 3 30 chr1 278904393 278904692 -3288972 + AluSx SINE Alu 1 291 -21 3914 234 94 111 chr1 278904692 278904859 -3288805 - L2 LINE L2 -923 2390 2222 349 108 50 19 chr1 278904859 278904931 -3288733 + AluJ/FLAM SINE Alu 1 61 -241 3914 234 94 111 chr1 278904931 278904948 -3288716 - L2 LINE L2 -1091 2222 2206 314 119 0 0 chr1 278904948 278904990 -3288674 + Alu SINE Alu 1 42 -261 3914 234 94 111 chr1 278904990 278905016 -3288648 - L2 LINE L2 -1107 2206 2181 1487 173 52 0 chr1 278905016 278905288 -3288376 + AluJo SINE Alu 1 286 -26 3914 234 94 111 chr1 278905288 278906567 -3287097 - L2 LINE L2 -1132 2181 764 356 223 58 25 chr1 278907449 278907570 -3286094 + MIR SINE MIR 88 212 -50 2162 113 0 3 chr1 278908204 278908514 -3285150 - AluSg SINE Alu -1 309 1 1668 157 0 39 chr1 278908521 278908826 -3284838 - AluJo SINE Alu -19 293 1 1947 110 48 7 chr1 278908835 278909126 -3284538 - AluSx SINE Alu -7 305 3 1672 145 34 0 chr1 278909405 278909667 -3283997 + AluJo SINE Alu 1 271 -41 1521 171 6 47 chr1 278909972 278910147 -3283517 - AluJo SINE Alu -4 308 150 2256 100 3 3 chr1 278910147 278910456 -3283208 - AluSg SINE Alu -1 309 1 1521 171 6 47 chr1 278910456 278910601 -3283063 - AluJo SINE Alu -162 150 1 333 261 34 19 chr1 278910613 278910736 -3282928 - MIR SINE MIR -49 159 34 1811 133 7 21 chr1 278911520 278911630 -3282034 + AluSx SINE Alu 2 112 -199 3754 92 8 4 chr1 278911630 278912139 -3281525 - MER9 LTR ERVK 0 511 1 1811 133 7 21 chr1 278912139 278912342 -3281322 + AluSx SINE Alu 112 311 0 840 247 61 4 chr1 278912348 278912579 -3281085 - L1ME3A LINE L1 -13 6157 5914 1723 201 106 34 chr1 278912593 278912921 -3280743 + MLT2B1 LTR ERVL 1 371 -149 2135 99 10 22 chr1 278912921 278913233 -3280431 + AluSx SINE Alu 1 308 -4 1723 201 106 34 chr1 278913233 278913346 -3280318 + MLT2B1 LTR ERVL 371 474 -46 926 111 0 8 chr1 278913346 278913472 -3280192 + MSTC LTR MaLR 1 125 -303 1312 96 0 0 chr1 278913472 278913650 -3280014 + AluSq SINE Alu 133 310 -3 366 107 0 18 chr1 278913650 278913706 -3279958 + MSTC LTR MaLR 374 428 0 297 75 75 38 chr1 278913708 278913761 -3279903 + MLT2B1 LTR ERVL 466 520 0 2030 134 0 13 chr1 278914184 278914498 -3279166 - AluSg SINE Alu 0 310 1 202 327 67 10 chr1 278915159 278915263 -3278401 - L2 LINE L2 -35 3278 3169 184 293 159 51 chr1 278915450 278915764 -3277900 - L2 LINE L2 -416 2898 2551 2228 91 0 23 chr1 278915772 278916079 -3277585 + AluSp SINE Alu 1 300 -13 1149 227 86 17 chr1 278916486 278916777 -3276887 + Charlie4a DNA MER1_type 2 312 -196 1463 170 98 0 chr1 278916820 278917096 -3276568 + AluJo SINE Alu 1 303 -9 203 118 59 0 chr1 278917096 278917130 -3276534 + GA-rich Low_complexity Low_complexity 1 36 0 18921 126 26 16 chr1 278917134 278917213 -3276451 + L1MA2 LINE L1 13 90 -7475 414 0 0 0 chr1 278917213 278917259 -3276405 + (CA)n Simple_repeat Simple_repeat 2 47 0 18921 126 26 16 chr1 278917259 278919979 -3273685 + L1MA2 LINE L1 90 2844 -4721 2109 115 7 0 chr1 278919979 278920283 -3273381 + AluSp SINE Alu 1 306 -7 18921 126 26 16 chr1 278920283 278920361 -3273303 + L1MA2 LINE L1 2844 2920 -4645 1879 101 18 4 chr1 278920362 278920638 -3273026 + AluSc SINE Alu 24 303 -6 4307 179 57 12 chr1 278920638 278921013 -3272651 + L1MA2 LINE L1 4187 4544 -3021 1394 212 6 13 chr1 278921013 278921324 -3272340 + AluJb SINE Alu 1 309 -3 4307 179 57 12 chr1 278921324 278921807 -3271857 + L1MA2 LINE L1 4544 5004 -2561 246 32 0 0 chr1 278921807 278921838 -3271826 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4307 179 57 12 chr1 278921838 278921912 -3271752 + L1MA2 LINE L1 5004 5073 -2492 2018 98 0 52 chr1 278921912 278922218 -3271446 + AluSx SINE Alu 1 290 -22 4307 179 57 12 chr1 278922218 278922247 -3271417 + L1MA2 LINE L1 5073 5193 -2372 1133 144 0 0 chr1 278922250 278922424 -3271240 + AluJb SINE Alu 129 302 -10 316 253 0 0 chr1 278922424 278922503 -3271161 + L1MA2 LINE L1 6415 6493 -1072 448 193 0 11 chr1 278922509 278922597 -3271067 + L1MA2 LINE L1 6592 6678 -887 1075 128 0 0 chr1 278922601 278922786 -3270878 + AluSg/x SINE Alu 126 310 0 270 79 0 0 chr1 278922786 278922824 -3270840 + L1MA2 LINE L1 6680 6717 -1007 1596 188 14 0 chr1 278922824 278923116 -3270548 + AluJb SINE Alu 1 296 -16 6091 100 42 54 chr1 278923129 278924005 -3269659 + L1MA2 LINE L1 6680 7548 -175 1913 123 7 0 chr1 278924005 278924274 -3269390 + AluSx SINE Alu 26 296 -16 6091 100 42 54 chr1 278924274 278924443 -3269221 + L1MA2 LINE L1 7548 7717 -6 842 232 5 0 chr1 278924462 278924652 -3269012 + AluJo SINE Alu 122 312 0 799 159 7 14 chr1 278924653 278924791 -3268873 + Charlie4 DNA MER1_type 1823 1959 -2 2258 93 0 31 chr1 278925147 278925469 -3268195 + AluSq SINE Alu 1 312 -1 1240 99 11 16 chr1 278925608 278925790 -3267874 - AluSx SINE Alu -131 181 1 2803 178 50 16 chr1 278925811 278926355 -3267309 - MER68 LTR ERV1 0 562 1 386 187 66 22 chr1 278926355 278926405 -3267259 + L1MC5 LINE L1 6997 7043 -918 1630 166 7 0 chr1 278926405 278926676 -3266988 - AluJb SINE Alu -39 273 1 386 187 66 22 chr1 278926676 278926716 -3266948 + L1MC5 LINE L1 7043 7091 -870 292 153 66 153 chr1 278926718 278926946 -3266718 + L1MC5 LINE L1 7542 7749 -212 271 201 0 18 chr1 278927148 278927210 -3266454 - MLT1G1 LTR MaLR -7 588 523 2258 95 0 0 chr1 278927213 278927517 -3266147 + AluY SINE Alu 1 304 -7 1233 150 20 112 chr1 278927784 278927830 -3265834 + LTR49-int LTR ERV1 1558 1607 -4724 1950 123 3 10 chr1 278927830 278928130 -3265534 - AluJo SINE Alu -6 306 9 1233 150 20 112 chr1 278928130 278928430 -3265234 + LTR49-int LTR ERV1 1607 1872 -4459 2133 125 6 10 chr1 278928430 278928743 -3264921 + LTR8 LTR ERV1 1 312 -379 547 108 11 43 chr1 278928869 278928962 -3264702 + Tigger1 DNA MER2_type 1748 1837 -581 2121 113 3 0 chr1 278929924 278930235 -3263429 + AluSx SINE Alu 1 312 0 2532 40 0 0 chr1 278930288 278930590 -3263074 + AluY SINE Alu 1 302 -9 471 262 94 27 chr1 278930805 278930954 -3262710 + HERVL LTR ERVL 4060 4218 -1436 3033 188 11 7 chr1 278930957 278931499 -3262165 - MER44D DNA MER2_type 0 605 7 569 222 84 12 chr1 278931506 278931673 -3261991 + Tigger1 DNA MER2_type 1 179 -2239 963 168 19 0 chr1 278931673 278931828 -3261836 - AluJo SINE Alu -7 295 138 542 176 0 0 chr1 278931846 278931937 -3261727 - AluJo SINE Alu -188 124 34 7065 124 32 12 chr1 278931941 278932750 -3260914 + Tigger1 DNA MER2_type 181 1019 -1399 2119 119 7 0 chr1 278932750 278933053 -3260611 - AluSq SINE Alu -8 305 1 7065 124 32 12 chr1 278933053 278933337 -3260327 + Tigger1 DNA MER2_type 1019 1296 -1122 35 41 0 0 chr1 278933476 278933525 -3260139 + GC_rich Low_complexity Low_complexity 1 49 0 535 122 89 0 chr1 278933944 278934034 -3259630 - AluJ/FLAM SINE Alu -210 102 5 2231 101 0 3 chr1 278934682 278934989 -3258675 + AluSx SINE Alu 1 306 -6 554 126 6 169 chr1 278934989 278935088 -3258576 + LTR49-int LTR ERV1 4191 4248 -3872 1516 158 3 41 chr1 278935088 278935379 -3258285 + AluJo SINE Alu 10 289 -23 554 126 6 169 chr1 278935379 278935462 -3258202 + LTR49-int LTR ERV1 4248 4343 -3777 2033 114 10 10 chr1 278935471 278935779 -3257885 + AluSx SINE Alu 1 308 -4 2077 100 3 3 chr1 278935797 278936088 -3257576 + AluSx SINE Alu 1 291 -21 519 140 9 47 chr1 278936101 278936208 -3257456 + LTR49-int LTR ERV1 4349 4451 -3669 779 135 8 0 chr1 278936273 278936399 -3257265 - L1PB1 LINE L1 0 6151 6025 420 184 11 0 chr1 278936432 278936519 -3257145 - L1PB1 LINE L1 -81 6070 5983 742 147 0 16 chr1 278936519 278936648 -3257016 + LTR49-int LTR ERV1 3978 4104 -2227 1281 120 0 16 chr1 278936650 278936841 -3256823 - AluSg/x SINE Alu -55 257 70 2382 60 0 3 chr1 278937324 278937622 -3256042 + AluY SINE Alu 1 297 -14 1564 209 17 0 chr1 278937632 278937933 -3255731 + AluJb SINE Alu 1 306 -6 2148 97 0 23 chr1 278937974 278938282 -3255382 + AluSx SINE Alu 1 301 -11 330 246 42 92 chr1 278938402 278938544 -3255120 + MLT1L LTR MaLR 18 152 -463 601 234 76 6 chr1 278938563 278938734 -3254930 + MER58A DNA MER1_type 42 224 0 429 192 0 0 chr1 278938767 278938840 -3254824 - AluSg/x SINE Alu -28 282 210 595 93 0 0 chr1 278938940 278939015 -3254649 - AluSg/x SINE Alu -152 160 86 286 150 33 50 chr1 278939097 278939157 -3254507 - HERVL LTR ERVL -881 4773 4715 728 262 100 39 chr1 278939413 278939455 -3254209 - HERVL LTR ERVL -1173 4591 4553 1968 107 0 18 chr1 278939455 278939786 -3253878 - AluSx SINE Alu 0 334 9 728 262 100 39 chr1 278939786 278940059 -3253605 - HERVL LTR ERVL -1211 4553 4221 2974 128 57 24 chr1 278940060 278940383 -3253281 - Tigger1 DNA MER2_type 0 2418 2072 2301 58 0 48 chr1 278940383 278940692 -3252972 - AluY SINE Alu -17 294 1 2974 128 57 24 chr1 278940692 278940859 -3252805 - Tigger1 DNA MER2_type -346 2072 1912 603 291 13 7 chr1 278940964 278941115 -3252549 + MIR SINE MIR 107 258 -4 1576 172 21 7 chr1 278941359 278941644 -3252020 + AluJb SINE Alu 2 290 -22 256 276 79 0 chr1 278942484 278942560 -3251104 - L2 LINE L2 -32 3240 3159 578 247 116 0 chr1 278943038 278943184 -3250480 + MIR SINE MIR 33 195 -67 3025 69 11 0 chr1 278943188 278943565 -3250099 + THE1A-int LTR MaLR 1200 1580 0 1773 81 0 0 chr1 278943565 278943788 -3249876 + THE1A LTR MaLR 1 223 -132 6889 221 121 31 chr1 278946736 278948289 -3245375 + HERVL68 LTR ERVL 346 2123 -914 2034 114 7 0 chr1 278948289 278948596 -3245068 + AluSc SINE Alu 1 309 0 6889 221 121 31 chr1 278948596 278949055 -3244609 + HERVL68 LTR ERVL 2123 2539 -498 753 195 23 58 chr1 278949073 278949247 -3244417 + MER68 LTR ERV1 395 562 0 686 221 147 47 chr1 278949376 278949634 -3244030 - L1MC4 LINE L1 -1054 6988 6705 322 321 86 66 chr1 278949645 278949947 -3243717 - L1MC4a LINE L1 -1224 6584 6277 949 138 69 23 chr1 278949957 278950131 -3243533 + MLT1-int LTR MaLR 430 611 -760 1622 104 0 0 chr1 278950285 278950497 -3243167 - AluSq SINE Alu -101 212 1 3216 136 21 72 chr1 278950507 278951089 -3242575 + LTR8 LTR ERV1 140 691 0 3949 95 30 11 chr1 278951152 278951710 -3241954 - MER61E LTR ERV1 0 569 1 1290 78 10 44 chr1 278951764 278951923 -3241741 - LTR23 LTR ERV1 0 437 285 1767 151 10 10 chr1 278951923 278952227 -3241437 + AluSx SINE Alu 1 304 -8 1290 78 10 44 chr1 278952227 278952273 -3241391 - LTR23 LTR ERV1 -152 285 239 1780 94 19 41 chr1 278952278 278952545 -3241119 + AluSq SINE Alu 1 261 -52 2525 52 0 0 chr1 278952745 278953053 -3240611 + AluY SINE Alu 1 308 -3 1229 173 198 0 chr1 278953472 278953720 -3239944 + AluJo SINE Alu 1 297 -5 181 242 48 16 chr1 278953883 278953945 -3239719 - L2 LINE L2 -1604 1710 1647 325 300 60 84 chr1 278953945 278954195 -3239469 - L1M4 LINE L1 -1222 4924 4681 349 316 101 7 chr1 278954226 278954365 -3239299 - MIR SINE MIR -108 154 3 203 298 83 41 chr1 278954413 278954534 -3239130 + L2 LINE L2 210 335 -2979 1788 161 88 6 chr1 278954534 278954863 -3238801 + MLT2D LTR ERVL 1 356 -58 1460 264 138 22 chr1 278954916 278955458 -3238206 + L2 LINE L2 1082 1686 -1628 349 269 140 11 chr1 278959988 278960174 -3233490 + L1MC4a LINE L1 5616 5825 -1983 626 255 28 4 chr1 278960623 278960805 -3232859 + L1MC4a LINE L1 5658 5833 -351 1522 159 59 0 chr1 278960806 278961076 -3232588 + AluJo SINE Alu 7 292 -20 231 203 0 34 chr1 278961128 278961187 -3232477 + L1MC/D LINE L1 5847 5903 -1905 2423 64 0 0 chr1 278961194 278961489 -3232175 + AluY SINE Alu 1 295 -16 2697 147 32 5 chr1 278961510 278961951 -3231713 + MER31A LTR ERV1 33 485 0 927 182 121 15 chr1 278962002 278962200 -3231464 + MER58A DNA MER1_type 6 224 0 481 168 80 88 chr1 278962507 278962644 -3231020 - LTR23 LTR ERV1 -301 136 1 * 1693 175 12 45 chr1 278962644 278962766 -3230898 + MER34C LTR ERV1 78 203 -382 1991 129 0 0 chr1 278962766 278963060 -3230604 + AluSx SINE Alu 5 298 -14 1693 175 12 45 chr1 278963060 278963264 -3230400 + MER34C LTR ERV1 203 393 -192 1778 118 23 0 chr1 278963265 278963528 -3230136 + AluSx SINE Alu 1 269 -43 2962 169 52 16 chr1 278963537 278964095 -3229569 - MER50 LTR ERV1 -156 578 1 889 128 0 0 chr1 278965177 278965310 -3228354 - AluJb SINE Alu -179 133 1 22 0 0 0 chr1 278965453 278965475 -3228189 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1 278966075 278966097 -3227567 + GC_rich Low_complexity Low_complexity 1 22 0 314 93 23 0 chr1 278966359 278966402 -3227262 - Alu SINE Alu -259 44 1 558 237 164 73 chr1 278966453 278966825 -3226839 + MLT1L LTR MaLR 161 566 -49 894 209 12 0 chr1 278966859 278967022 -3226642 - MER58B DNA MER1_type -1 340 176 630 233 33 56 chr1 278967395 278967575 -3226089 - MER58B DNA MER1_type -165 176 1 361 185 25 37 chr1 278967947 278968028 -3225636 + MIR SINE MIR 48 127 -81 2161 98 3 3 chr1 278968043 278968348 -3225316 + AluSp SINE Alu 1 305 -8 238 320 122 6 chr1 278968560 278968716 -3224948 + MIR3 SINE MIR 32 205 -3 503 222 135 5 chr1 278968828 278968989 -3224675 - MER5A DNA MER1_type -1 188 4 2070 98 7 7 chr1 278970385 278970681 -3222983 + AluSx SINE Alu 1 296 -16 269 276 155 26 chr1 278971917 278972033 -3221631 + MIR SINE MIR 23 153 -55 294 29 0 0 chr1 278973700 278973735 -3219929 + (CA)n Simple_repeat Simple_repeat 2 36 0 1513 76 5 9 chr1 278974132 278974342 -3219322 - AluSp SINE Alu -104 209 1 1402 174 11 8 chr1 278974503 278974767 -3218897 + AluJo SINE Alu 31 295 -17 2227 88 20 0 chr1 278976233 278976530 -3217134 + AluSg SINE Alu 1 303 -7 796 148 0 0 chr1 278977162 278977277 -3216387 + FLAM_C SINE Alu 2 116 -27 1946 106 15 0 chr1 278977417 278977691 -3215973 - AluSx SINE Alu -25 287 10 181 239 60 30 chr1 278977702 278977769 -3215895 - MIR SINE MIR -66 142 74 2131 125 0 0 chr1 278978812 278979124 -3214540 - AluSx SINE Alu 0 312 1 1290 169 96 22 chr1 278979126 278979398 -3214266 - L1M3 LINE L1 -416 5767 5476 980 113 0 0 chr1 278979398 278979531 -3214133 - AluSq/x SINE Alu -179 133 1 284 174 163 11 chr1 278979543 278979635 -3214029 - MLT1L LTR MaLR -341 274 169 2402 193 128 6 chr1 278980139 278980688 -3212976 - MLT1E2 LTR MaLR -3 623 8 1905 112 31 7 chr1 278981033 278981347 -3212317 - AluSg SINE Alu 0 310 1 2336 111 56 8 chr1 278981897 278982274 -3211390 - L1MB2 LINE L1 0 6171 5777 7303 33 5 0 chr1 278982292 278983148 -3210516 - L1PA5 LINE L1 -1 6153 5294 608 150 31 63 chr1 278983168 278983295 -3210369 - L1MB2 LINE L1 -427 5756 5634 264 254 0 0 chr1 278983305 278983360 -3210304 - L1M4 LINE L1 -1543 4603 4549 389 259 94 80 chr1 278983477 278983763 -3209901 - L2 LINE L2 -135 3178 2889 2227 68 31 0 chr1 278984064 278984357 -3209307 - AluY SINE Alu -9 302 1 669 186 72 18 chr1 278984620 278984690 -3208974 + MER53 DNA DNA 14 79 -110 1534 195 10 7 chr1 278984690 278984997 -3208667 + AluSx SINE Alu 1 308 -4 270 0 0 0 chr1 278984997 278985027 -3208637 + (TA)n Simple_repeat Simple_repeat 2 31 0 669 186 72 18 chr1 278985027 278985122 -3208542 + MER53 DNA DNA 78 189 0 2095 176 16 10 chr1 278985438 278985641 -3208023 - MLT1B LTR MaLR -1 389 182 1760 115 27 0 chr1 278985641 278985902 -3207762 - AluSx SINE Alu -44 268 1 2095 176 16 10 chr1 278985902 278986085 -3207579 - MLT1B LTR MaLR -208 182 1 702 241 32 37 chr1 278986131 278986347 -3207317 + REP3 LTR ERV 21 235 -327 1008 188 89 68 chr1 278986347 278986672 -3206992 + LTR56 LTR ERV1 1 332 -113 2127 75 12 50 chr1 278986676 278986954 -3206710 + AluY SINE Alu 1 267 -44 207 0 0 0 chr1 278986954 278986977 -3206687 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 2127 75 12 50 chr1 278986977 278987019 -3206645 + AluY SINE Alu 267 309 -2 297 198 0 0 chr1 278987022 278987103 -3206561 + A-rich Low_complexity Low_complexity 1 81 0 1879 137 0 17 chr1 278987121 278987421 -3206243 + AluSx SINE Alu 1 295 -17 285 233 48 19 chr1 278987463 278987566 -3206098 + LTR23 LTR ERV1 332 437 0 * 848 242 100 31 chr1 278987566 278987853 -3205811 + REP3 LTR ERV 232 538 -24 2306 82 3 0 chr1 278987945 278988248 -3205416 - AluSp SINE Alu -9 304 1 401 40 20 0 chr1 278988389 278988439 -3205225 + MER34C LTR ERV1 32 82 -503 2344 139 58 7 chr1 278988443 278988854 -3204810 - LTR23 LTR ERV1 -5 432 1 616 214 0 0 chr1 278988975 278989092 -3204572 - LTR23-int LTR ERV1 -223 4900 4784 4440 150 30 21 chr1 278989109 278989534 -3204130 - LTR49-int LTR ERV1 -663 5668 5230 2159 123 0 0 chr1 278989534 278989834 -3203830 - AluSx SINE Alu -12 300 1 4440 150 30 21 chr1 278989834 278990230 -3203434 - LTR49-int LTR ERV1 -1101 5230 4839 284 286 186 0 chr1 278990348 278990488 -3203176 - MIR SINE MIR -51 211 46 1927 96 32 0 chr1 278990973 278991255 -3202409 - AluSq SINE Alu -22 291 1 1894 97 7 11 chr1 278991264 278991543 -3202121 - AluSq SINE Alu -35 278 1 1636 156 6 53 chr1 278992492 278992813 -3200851 + AluJo SINE Alu 1 306 -6 856 110 0 83 chr1 278993078 278993223 -3200441 - FLAM_C SINE Alu 0 133 1 1444 87 5 0 chr1 278993970 278994165 -3199499 + MLT2A1 LTR ERVL 209 404 -40 355 131 0 24 chr1 278994165 278994249 -3199415 + (TA)n Simple_repeat Simple_repeat 2 83 0 332 85 0 0 chr1 278994265 278994312 -3199352 + MLT2A1 LTR ERVL 399 445 -8 964 117 28 39 chr1 278994592 278994772 -3198892 + L1PB2 LINE L1 5967 6144 -7 622 167 0 10 chr1 278994802 278994904 -3198760 + AluS SINE Alu 2 102 -210 1093 279 104 81 chr1 278995039 278995811 -3197853 + L2 LINE L2 87 906 -2408 2302 89 0 0 chr1 278995811 278996115 -3197549 - AluSx SINE Alu -8 304 1 1093 279 104 81 chr1 278996115 278996705 -3196959 + L2 LINE L2 906 1481 -1833 2083 108 0 7 chr1 278996775 278997070 -3196594 - AluSx SINE Alu -19 293 1 795 243 99 66 chr1 278997257 278997410 -3196254 - L1ME3A LINE L1 -208 5962 5816 2201 101 0 13 chr1 278997410 278997727 -3195937 - AluSq SINE Alu 0 313 1 795 243 99 66 chr1 278997727 278997935 -3195729 - L1ME3A LINE L1 -354 5816 5589 1960 111 10 13 chr1 278998484 278998790 -3194874 + AluSg SINE Alu 1 305 -5 201 222 0 0 chr1 278998790 278998826 -3194838 + polypurine Low_complexity Low_complexity 1 36 0 1005 245 78 76 chr1 278998944 278999198 -3194466 - L1ME3A LINE L1 -581 5581 5329 2034 110 0 0 chr1 278999198 278999518 -3194146 - AluSx SINE Alu 0 322 3 1005 245 78 76 chr1 278999518 278999714 -3193950 - L1ME3A LINE L1 -833 5329 5135 2833 43 31 6 chr1 278999714 279000066 -3193598 + L1PA8 LINE L1 5805 6165 -7 1005 245 78 76 chr1 279000066 279000150 -3193514 - L1ME3A LINE L1 -1027 5135 5053 776 165 8 8 chr1 279000150 279000283 -3193381 - FLAM_C SINE Alu 0 133 1 1005 245 78 76 chr1 279000283 279000689 -3192975 - L1ME3A LINE L1 -1109 5053 4628 318 192 0 0 chr1 279000742 279000794 -3192870 + L1MC4 LINE L1 6652 6703 -1339 307 232 0 0 chr1 279000750 279000806 -3192858 - L1MC4 LINE L1 -1339 6703 6648 * 1924 154 0 0 chr1 279000815 279001120 -3192544 - AluSx SINE Alu -7 305 1 279 204 0 0 chr1 279001170 279001224 -3192440 - FLAM SINE Alu -2 131 78 1436 115 5 0 chr1 279001331 279001540 -3192124 + AluSg/x SINE Alu 101 310 -2 2002 99 0 3 chr1 279001945 279002264 -3191400 + AluSg SINE Alu 1 318 0 183 100 0 0 chr1 279002267 279002297 -3191367 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 364 298 48 0 chr1 279002476 279002600 -3191064 + MIR SINE MIR 112 241 -21 2027 108 3 13 chr1 279002600 279002914 -3190750 + AluY SINE Alu 1 311 0 845 153 8 0 chr1 279003315 279003446 -3190218 + AluJo/FLAM SINE Alu 1 132 -170 1340 122 0 45 chr1 279003447 279003508 -3190156 + AluJo SINE Alu 82 144 -168 2330 91 0 0 chr1 279003508 279003806 -3189858 + AluSg SINE Alu 1 298 -12 1340 122 0 45 chr1 279003806 279003965 -3189699 + AluJo SINE Alu 144 292 -20 2037 116 0 0 chr1 279003976 279004269 -3189395 + AluSg SINE Alu 1 293 -17 844 122 0 38 chr1 279004422 279004553 -3189111 - FLAM_C SINE Alu -6 127 2 1745 124 14 18 chr1 279004673 279004980 -3188684 + AluSx SINE Alu 1 306 0 2227 89 3 13 chr1 279004989 279005305 -3188359 + AluSp SINE Alu 1 313 0 348 305 11 68 chr1 279006325 279006376 -3187288 - MIR SINE MIR -20 242 190 2358 55 0 22 chr1 279006376 279006687 -3186977 - AluY SINE Alu -6 305 2 348 305 11 68 chr1 279006687 279006812 -3186852 - MIR SINE MIR -72 190 76 406 90 45 0 chr1 279007209 279007276 -3186388 + MER53 DNA DNA 14 83 -106 1894 150 7 0 chr1 279007279 279007585 -3186079 + AluSx SINE Alu 1 308 -4 261 0 0 0 chr1 279007585 279007614 -3186050 + (TA)n Simple_repeat Simple_repeat 1 29 0 180 0 0 0 chr1 279008225 279008245 -3185419 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1121 82 20 0 chr1 279008245 279008391 -3185273 - AluSq SINE Alu -28 285 137 24 0 0 0 chr1 279009017 279009041 -3184623 + AT_rich Low_complexity Low_complexity 1 24 0 2606 159 16 21 chr1 279009330 279009757 -3183907 + MSTC LTR MaLR 4 428 0 29 28 0 0 chr1 279010366 279010402 -3183262 + AT_rich Low_complexity Low_complexity 1 36 0 1539 208 112 0 chr1 279010949 279011262 -3182402 - MER7A DNA MER2_type 0 346 1 1495 173 3 54 chr1 279011399 279011694 -3181970 + AluJo SINE Alu 1 280 -32 189 0 0 0 chr1 279011698 279011719 -3181945 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 264 146 354 0 chr1 279011722 279011804 -3181860 - L2 LINE L2 -4 3309 3199 1855 176 72 52 chr1 279011970 279012356 -3181308 - MSTD LTR MaLR -2 394 1 2214 110 7 13 chr1 279014066 279014376 -3179288 + AluSp SINE Alu 1 308 -5 271 328 114 49 chr1 279014513 279014882 -3178782 - L2 LINE L2 -836 2478 2086 558 248 29 21 chr1 279015351 279015589 -3178075 + L1M4 LINE L1 2385 2624 -3522 702 101 34 0 chr1 279016573 279016782 -3176882 + (TA)n Simple_repeat Simple_repeat 1 216 0 303 152 0 0 chr1 279016891 279016937 -3176727 - Alu SINE Alu -262 46 1 295 278 126 3 chr1 279016947 279017100 -3176564 - HERV16 LTR ERVL -2197 2799 2623 244 306 59 12 chr1 279017160 279017245 -3176419 - MIR SINE MIR -154 108 20 351 306 75 25 chr1 279017429 279017589 -3176075 - HERV16 LTR ERVL -3114 2540 2373 450 202 67 0 chr1 279017612 279017701 -3175963 - LTR16A LTR ERVL 0 450 356 374 354 0 11 chr1 279017701 279017882 -3175782 - HERV16 LTR ERVL -4293 1361 1183 674 175 83 0 chr1 279018176 279018296 -3175368 + FLAM_A SINE Alu 1 130 -3 2321 165 23 10 chr1 279018308 279018960 -3174704 + L1MC/D LINE L1 4999 5654 -679 801 147 0 15 chr1 279018961 279019097 -3174567 + AluJb SINE Alu 178 311 -1 2396 103 0 0 chr1 279019112 279019422 -3174242 + AluSg SINE Alu 1 310 0 1915 233 63 35 chr1 279019423 279020296 -3173368 + L1MEc LINE L1 1875 2741 -3474 204 125 0 0 chr1 279020619 279020651 -3173013 + (CA)n Simple_repeat Simple_repeat 1 32 0 197 309 95 16 chr1 279020689 279020815 -3172849 + L2 LINE L2 2888 3023 -249 2174 101 7 3 chr1 279020866 279021164 -3172500 - AluSx SINE Alu -13 299 1 459 289 111 16 chr1 279021245 279021435 -3172229 + MIR SINE MIR 41 248 -14 630 197 78 63 chr1 279021652 279021849 -3171815 + MIR SINE MIR 37 252 -10 2254 100 3 0 chr1 279021851 279022141 -3171523 - AluSx SINE Alu -18 294 4 1434 306 222 38 chr1 279023927 279026247 -3167417 + L2 LINE L2 231 2975 -339 2007 107 38 14 chr1 279026404 279026694 -3166970 + AluSx SINE Alu 1 297 -15 180 0 0 0 chr1 279027587 279027607 -3166057 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 603 121 132 0 chr1 279027607 279027698 -3165966 - FLAM_C SINE Alu -27 116 14 261 83 0 0 chr1 279027821 279027857 -3165807 - MLT2F LTR ERVL 0 663 628 224 159 23 0 chr1 279027866 279027910 -3165754 + (TG)n Simple_repeat Simple_repeat 1 45 0 304 194 0 81 chr1 279027934 279028039 -3165625 - MLT2C2 LTR ERVL -51 412 251 241 262 16 0 chr1 279028486 279028547 -3165117 - L2 LINE L2 -3 3310 3249 251 371 79 11 chr1 279028905 279029083 -3164581 - L2 LINE L2 -604 2710 2521 738 280 114 31 chr1 279029236 279029586 -3164078 + MLT1L LTR MaLR 237 615 0 207 263 83 92 chr1 279029591 279029808 -3163856 - L2 LINE L2 -798 2516 2302 1904 122 7 0 chr1 279030044 279030315 -3163349 + AluSx SINE Alu 1 273 -39 182 36 0 36 chr1 279030315 279030343 -3163321 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr1 279030396 279030418 -3163246 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr1 279034082 279034126 -3159538 + GC_rich Low_complexity Low_complexity 1 44 0 661 300 235 6 chr1 279034757 279035309 -3158355 - L2 LINE L2 -3 3310 2631 282 225 141 73 chr1 279035366 279035557 -3158107 + MLT1H LTR MaLR 95 298 -251 301 123 219 14 chr1 279035665 279035738 -3157926 + MLT1H LTR MaLR 454 541 -8 1317 265 275 36 chr1 279035746 279036869 -3156795 - L2 LINE L2 -678 2636 1246 225 197 0 76 chr1 279036985 279037051 -3156613 - MLT1D LTR MaLR -376 129 69 364 306 12 65 chr1 279037090 279037281 -3156383 + L2 LINE L2 2133 2310 -1004 2232 176 80 21 chr1 279037281 279037758 -3155906 - MLT1D LTR MaLR 0 505 1 364 306 12 65 chr1 279037758 279037814 -3155850 + L2 LINE L2 2310 2367 -947 366 274 77 0 chr1 279037882 279037999 -3155665 - L2 LINE L2 -1 3312 3187 313 170 82 0 chr1 279038011 279038060 -3155604 + (TA)n Simple_repeat Simple_repeat 2 46 -101 2222 98 0 35 chr1 279038060 279038376 -3155288 - AluSp SINE Alu -8 305 1 313 170 82 0 chr1 279038376 279038461 -3155203 + (TA)n Simple_repeat Simple_repeat 46 147 0 32 98 0 0 chr1 279038641 279038743 -3154921 + AT_rich Low_complexity Low_complexity 1 102 0 599 234 226 8 chr1 279038806 279039167 -3154497 - LTR50 LTR ERVL -52 743 216 1750 200 200 32 chr1 279039362 279039826 -3153838 - MLT1F LTR MaLR 0 542 1 1544 246 68 33 chr1 279040646 279041528 -3152136 - HERV16 LTR ERVL -2380 2616 1666 354 360 42 33 chr1 279041576 279041907 -3151757 - HERV16 LTR ERVL -4273 723 390 475 330 31 9 chr1 279042006 279042233 -3151431 - HERV16 LTR ERVL -4753 243 12 992 276 93 21 chr1 279042243 279042674 -3150990 - LTR16B LTR ERVL 0 464 3 430 227 169 104 chr1 279042777 279043037 -3150627 + L2 LINE L2 1557 1833 -1481 1575 117 12 51 chr1 279043182 279043439 -3150225 - MER1B DNA MER1_type 0 339 133 1781 115 32 4 chr1 279043443 279043721 -3149943 + L1MA5A LINE L1 6008 6293 -4 4322 141 38 57 chr1 279043959 279044760 -3148904 - LTR1 LTR ERV1 0 785 1 245 197 30 15 chr1 279045010 279045076 -3148588 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 446 319 58 51 chr1 279045136 279045393 -3148271 - L1M4 LINE L1 -539 5645 5387 578 272 23 23 chr1 279045393 279045566 -3148098 + MIR SINE MIR 13 185 -77 589 243 120 49 chr1 279045701 279045815 -3147849 + L1MC4a LINE L1 6070 6174 -1634 3836 66 262 2 chr1 279045815 279046361 -3147303 + LTR12 LTR ERV1 1 688 0 589 243 120 49 chr1 279046361 279046596 -3147068 + L1MC4a LINE L1 6174 6444 -1364 1169 108 0 51 chr1 279046619 279046795 -3146869 + MER1B DNA MER1_type 172 338 -1 2184 243 164 88 chr1 279046799 279047776 -3145888 + L1MC4 LINE L1 6455 7356 -686 1772 144 65 0 chr1 279047776 279048053 -3145611 - AluJb SINE Alu -17 295 1 2184 243 164 88 chr1 279048053 279048325 -3145339 + L1MC4 LINE L1 7356 7606 -436 1935 147 13 7 chr1 279048325 279048625 -3145039 - AluSx SINE Alu -10 302 1 2184 243 164 88 chr1 279048625 279048849 -3144815 + L1MC4 LINE L1 7606 8042 0 1502 122 9 22 chr1 279048953 279049182 -3144482 + AluJb SINE Alu 82 307 -5 1807 141 0 18 chr1 279050286 279050569 -3143095 - AluJo SINE Alu -22 290 13 4215 185 59 43 chr1 279050817 279051836 -3141828 + L1MB8 LINE L1 3300 4301 -1877 2343 75 0 3 chr1 279051836 279052129 -3141535 + AluY SINE Alu 1 292 -19 4215 185 59 43 chr1 279052129 279053886 -3139778 + L1MB8 LINE L1 4301 6178 0 2196 93 20 13 chr1 279053922 279054222 -3139442 + AluSx SINE Alu 1 302 -10 2139 101 7 0 chr1 279055311 279055612 -3138052 - AluSg SINE Alu 0 303 1 2288 120 47 17 chr1 279055669 279056028 -3137636 - MSTB LTR MaLR 0 426 57 888 138 0 8 chr1 279056028 279056158 -3137506 - FLAM_C SINE Alu -14 129 1 416 94 0 0 chr1 279056158 279056211 -3137453 - MSTB LTR MaLR -371 55 3 824 288 45 5 chr1 279057484 279057706 -3135958 + MIR SINE MIR 28 258 -4 2167 121 3 0 chr1 279057950 279058247 -3135417 + AluSq SINE Alu 2 299 -14 206 179 77 0 chr1 279259148 279259187 -2934477 + MIR SINE MIR 204 245 -17 668 330 84 28 chr1 279259357 279259715 -2933949 - L2 LINE L2 -4 3309 2932 652 204 0 0 chr1 279260393 279260506 -2933158 - FLAM_A SINE Alu -19 114 2 342 345 27 14 chr1 279260509 279260657 -2933007 - MIR SINE MIR -111 151 2 237 345 10 72 chr1 279261904 279262113 -2931551 + L2 LINE L2 2934 3129 -143 1902 73 12 8 chr1 279264717 279265001 -2928663 + AluSx SINE Alu 39 323 0 349 299 0 21 chr1 279265211 279265308 -2928356 - L2 LINE L2 -40 3273 3179 182 273 0 104 chr1 279265373 279265450 -2928214 - L2 LINE L2 -18 3254 3186 439 313 178 12 chr1 279265564 279265890 -2927774 - L2 LINE L2 -1236 2078 1699 905 227 58 8 chr1 279267329 279267571 -2926093 - L1MB5 LINE L1 -9 6165 5912 687 185 0 0 chr1 279267672 279267780 -2925884 - FLAM_C SINE Alu -30 113 6 198 103 0 0 chr1 279270065 279270094 -2923570 + (GGA)n Simple_repeat Simple_repeat 3 31 0 742 185 0 0 chr1 279270989 279271108 -2922556 + FLAM_C SINE Alu 1 119 -14 412 169 28 17 chr1 279271159 279271336 -2922328 + (TA)n Simple_repeat Simple_repeat 2 180 0 2316 115 0 10 chr1 279271439 279271753 -2921911 + AluY SINE Alu 1 311 0 308 292 64 29 chr1 279273351 279273522 -2920142 - MIR3 SINE MIR -12 196 20 184 341 179 8 chr1 279273944 279274067 -2919597 - L3b LINE CR1 -338 1245 1102 1344 198 20 92 chr1 279275492 279275892 -2917772 + MLT1A2 LTR MaLR 4 374 0 1466 96 5 0 chr1 279276210 279276407 -2917257 - AluSg/x SINE Alu -21 291 94 2491 54 3 22 chr1 279276410 279276723 -2916941 - AluY SINE Alu -4 307 1 247 235 183 26 chr1 279276935 279277050 -2916614 - MIR3 SINE MIR 0 208 76 368 281 125 22 chr1 279277085 279277405 -2916259 - LTR37A LTR ERV1 0 426 74 1197 100 5 5 chr1 279278080 279278279 -2915385 + AluY SINE Alu 11 309 -2 636 117 78 0 chr1 279279392 279279520 -2914144 - L1MB4 LINE L1 -20 6160 6023 1829 172 3 0 chr1 279279642 279279938 -2913726 + AluJb SINE Alu 1 297 -15 633 146 0 19 chr1 279279977 279280080 -2913584 - U6 snRNA snRNA 0 107 7 203 342 97 0 chr1 279280217 279280331 -2913333 - MIR SINE MIR -65 197 73 251 344 22 0 chr1 279281070 279281160 -2912504 + MIR SINE MIR 41 132 -76 2476 82 0 0 chr1 279281268 279281572 -2912092 + AluSg SINE Alu 1 304 -6 249 328 76 25 chr1 279282607 279282726 -2910938 + MIR3 SINE MIR 14 138 -70 502 151 308 14 chr1 279282773 279282919 -2910745 + MER5A DNA MER1_type 1 189 0 1009 177 13 0 chr1 279283054 279283239 -2910425 - AluJo SINE Alu 0 308 122 506 167 0 0 chr1 279283284 279283374 -2910290 - MST-int LTR MaLR -243 1408 1319 884 159 0 21 chr1 279283374 279283519 -2910145 - AluJo SINE Alu -170 142 1 2137 119 0 3 chr1 279285228 279285530 -2908134 - AluSg SINE Alu -9 301 1 753 192 66 30 chr1 279285594 279285792 -2907872 - MER3 DNA MER1_type 0 209 5 195 129 0 0 chr1 279286569 279286600 -2907064 + (CA)n Simple_repeat Simple_repeat 1 31 0 3345 155 115 118 chr1 279287732 279288179 -2905485 + L1MC3 LINE L1 6668 7115 -670 243 212 15 15 chr1 279288179 279288245 -2905419 + MLT1F1 LTR MaLR 36 101 -466 3345 155 115 118 chr1 279288245 279288852 -2904812 + L1MC3 LINE L1 7115 7784 -1 181 280 60 0 chr1 279288921 279288971 -2904693 + MIR SINE MIR 11 63 -199 21 0 0 0 chr1 279293109 279293130 -2900534 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 279293185 279293206 -2900458 + AT_rich Low_complexity Low_complexity 1 21 0 715 173 80 7 chr1 279294153 279294303 -2899361 + MER3 DNA MER1_type 41 201 -8 342 205 24 0 chr1 279294268 279294351 -2899313 - MER3 DNA MER1_type -119 90 6 * 25 83 0 0 chr1 279294521 279294581 -2899083 + AT_rich Low_complexity Low_complexity 1 60 0 1528 149 3 76 chr1 279294606 279294774 -2898890 - AluJo SINE Alu -32 280 142 2167 69 0 0 chr1 279294774 279295034 -2898630 - AluY SINE Alu -16 295 36 1528 149 3 76 chr1 279295034 279295167 -2898497 - AluJo SINE Alu -170 142 1 255 256 13 51 chr1 279295862 279295940 -2897724 + MIR SINE MIR 49 123 -85 1302 165 135 11 chr1 279296420 279296686 -2896978 - AluJb SINE Alu -3 299 1 881 192 26 21 chr1 279297268 279297461 -2896203 - Tigger2 DNA MER2_type -2175 543 350 7036 49 6 0 chr1 279297466 279298711 -2894953 - L1PA5 LINE L1 -13 6141 4887 248 294 22 52 chr1 279298839 279298975 -2894689 - L1ME2 LINE L1 -10 6154 6023 1941 151 0 0 chr1 279299187 279299472 -2894192 + AluJb SINE Alu 22 306 -6 4125 132 56 21 chr1 279299485 279299803 -2893861 + Tigger3b DNA MER2_type 3 308 -2720 1639 203 0 10 chr1 279299803 279300099 -2893565 + AluJo SINE Alu 1 293 -19 4125 132 56 21 chr1 279300099 279300598 -2893066 + Tigger3b DNA MER2_type 308 849 -382 383 97 0 16 chr1 279300598 279300660 -2893004 + Tigger3b DNA MER2_type 788 848 -383 370 111 0 16 chr1 279300661 279300724 -2892940 + Tigger3b DNA MER2_type 788 849 -382 289 131 33 16 chr1 279300724 279300785 -2892879 + Tigger3b DNA MER2_type 788 849 -382 391 95 0 16 chr1 279300785 279300848 -2892816 + Tigger3b DNA MER2_type 789 850 -382 387 95 0 16 chr1 279300848 279300911 -2892753 + Tigger3b DNA MER2_type 788 849 -382 413 79 0 16 chr1 279300911 279300974 -2892690 + Tigger3b DNA MER2_type 789 850 -382 347 127 0 16 chr1 279300974 279301037 -2892627 + Tigger3b DNA MER2_type 788 849 -382 378 111 0 16 chr1 279301037 279301100 -2892564 + Tigger3b DNA MER2_type 789 850 -382 390 95 0 16 chr1 279301100 279301163 -2892501 + Tigger3b DNA MER2_type 789 850 -382 289 131 33 16 chr1 279301163 279301224 -2892440 + Tigger3b DNA MER2_type 788 849 -382 391 95 0 16 chr1 279301224 279301287 -2892377 + Tigger3b DNA MER2_type 789 850 -382 391 95 0 16 chr1 279301287 279301350 -2892314 + Tigger3b DNA MER2_type 788 849 -382 384 95 0 16 chr1 279301350 279301413 -2892251 + Tigger3b DNA MER2_type 788 849 -382 279 148 33 16 chr1 279301413 279301474 -2892190 + Tigger3b DNA MER2_type 788 849 -382 325 86 86 17 chr1 279301474 279301532 -2892132 + Tigger3b DNA MER2_type 788 849 -382 408 79 0 16 chr1 279301532 279301595 -2892069 + Tigger3b DNA MER2_type 789 850 -382 289 131 33 16 chr1 279301595 279301656 -2892008 + Tigger3b DNA MER2_type 788 849 -382 347 127 0 16 chr1 279301656 279301719 -2891945 + Tigger3b DNA MER2_type 788 849 -382 231 130 43 0 chr1 279301719 279301765 -2891899 + Tigger3b DNA MER2_type 789 836 -396 277 210 48 57 chr1 279301877 279302001 -2891663 + L1ME4a LINE L1 5946 6068 -53 22 0 0 0 chr1 279302019 279302041 -2891623 + AT_rich Low_complexity Low_complexity 1 22 0 2020 112 54 0 chr1 279302674 279302969 -2890695 + AluSq SINE Alu 1 311 -2 198 308 110 22 chr1 279303078 279303169 -2890495 - L2 LINE L2 -4 3268 3170 1642 180 46 19 chr1 279303214 279303587 -2890077 - MLT1B LTR MaLR -7 383 1 422 276 128 26 chr1 279303760 279304025 -2889639 - MER102b DNA MER1_type -1 340 49 405 307 114 0 chr1 279304202 279304316 -2889348 + L2 LINE L2 3142 3268 -4 2188 103 3 0 chr1 279305368 279305660 -2888004 + AluSg SINE Alu 1 293 -17 318 253 138 0 chr1 279305683 279305770 -2887894 + MIR SINE MIR 59 157 -105 21 36 0 0 chr1 279306655 279306683 -2886981 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1 279308855 279308884 -2884780 + AT_rich Low_complexity Low_complexity 1 29 0 2202 109 3 0 chr1 279311565 279311859 -2881805 + AluSg SINE Alu 1 295 -15 601 323 39 47 chr1 279312461 279312845 -2880819 + L1MEd LINE L1 288 668 -5451 1095 203 38 0 chr1 279312875 279313087 -2880577 + AluJb SINE Alu 84 303 -9 305 231 84 67 chr1 279313090 279313328 -2880336 + L1MEd LINE L1 704 945 -5174 648 306 135 0 chr1 279313408 279313712 -2879952 + L1ME3A LINE L1 5565 5909 -261 2500 41 7 0 chr1 279313899 279314192 -2879472 + AluY SINE Alu 1 295 -16 1705 202 79 111 chr1 279314638 279315407 -2878257 + LTR1B LTR ERV1 1 745 -81 378 304 17 9 chr1 279315488 279315603 -2878061 + LTR28 LTR ERV1 905 1020 0 4462 218 94 86 chr1 279315757 279317498 -2876166 + MER52A LTR ERV1 1 1755 0 429 315 41 20 chr1 279317929 279318154 -2875510 + MIR SINE MIR 23 251 -11 305 282 61 30 chr1 279318858 279318989 -2874675 - L2 LINE L2 -794 2520 2386 1893 293 92 67 chr1 279319657 279321115 -2872549 - L2 LINE L2 -70 3243 1753 206 327 0 0 chr1 279322432 279322487 -2871177 - MIR3 SINE MIR -16 192 138 2280 116 0 0 chr1 279322891 279323202 -2870462 + AluY SINE Alu 1 311 0 253 299 95 20 chr1 279323266 279323373 -2870291 + MIR SINE MIR 43 156 -64 183 42 0 0 chr1 279324725 279324749 -2868915 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2533 28 0 0 chr1 279324751 279325033 -2868631 - AluY SINE Alu -29 282 1 23 33 0 0 chr1 279325033 279325063 -2868601 + AT_rich Low_complexity Low_complexity 1 30 0 311 292 119 36 chr1 279326521 279326740 -2866924 + MIR SINE MIR 26 262 0 1494 192 63 3 chr1 279326916 279327203 -2866461 - AluJo SINE Alu -8 304 1 186 273 41 99 chr1 279327443 279327564 -2866100 - MIR SINE MIR -147 115 2 184 327 0 0 chr1 279327874 279327926 -2865738 - MIR SINE MIR -10 252 201 2806 189 59 13 chr1 279328410 279329082 -2864582 - Tigger7 DNA MER2_type 0 2587 1 354 23 0 0 chr1 279329435 279329478 -2864186 + (CA)n Simple_repeat Simple_repeat 2 44 0 1503 187 40 4 chr1 279329704 279329977 -2863687 + AluJb SINE Alu 1 283 -29 198 0 0 0 chr1 279329977 279329999 -2863665 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 840 195 19 0 chr1 279331322 279331476 -2862188 - FAM SINE Alu -6 43 1 306 328 43 0 chr1 279331515 279331631 -2862033 + MIR SINE MIR 84 204 -58 583 303 45 41 chr1 279331893 279332137 -2861527 + MIR SINE MIR 18 262 0 259 314 119 17 chr1 279332167 279332285 -2861379 - MIR SINE MIR -125 137 8 234 322 58 0 chr1 279332360 279332447 -2861217 - L2 LINE L2 -51 3262 3171 6092 125 149 25 chr1 279333771 279334908 -2858756 + MER52C LTR ERV1 1 1278 0 186 244 49 0 chr1 279334983 279335024 -2858640 - L2 LINE L2 -30 3242 3200 333 287 20 0 chr1 279335326 279335427 -2858237 - L2 LINE L2 -1501 1813 1711 418 321 58 16 chr1 279335480 279335670 -2857994 - MIR3 SINE MIR -9 199 2 2335 101 0 0 chr1 279337274 279337571 -2856093 + AluSg SINE Alu 1 297 -13 400 296 121 63 chr1 279337698 279337921 -2855743 + MIR SINE MIR 20 255 -7 396 157 191 95 chr1 279339101 279339248 -2854416 + MIR SINE MIR 102 262 0 342 67 0 0 chr1 279339714 279339759 -2853905 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 21 0 0 0 chr1 279339759 279339780 -2853884 + AT_rich Low_complexity Low_complexity 1 21 0 1489 139 53 64 chr1 279339798 279340079 -2853585 - AluJo SINE Alu -34 278 1 2392 97 0 0 chr1 279341079 279341389 -2852275 - AluY SINE Alu -1 310 1 1962 126 7 33 chr1 279342007 279342309 -2851355 + AluSx SINE Alu 2 295 -17 585 281 82 79 chr1 279342849 279343166 -2850498 - L2 LINE L2 -5 3267 2950 230 354 73 6 chr1 279343163 279343327 -2850337 - L2 LINE L2 -786 2528 2354 * 237 262 252 0 chr1 279343568 279343675 -2849989 - MIR SINE MIR -114 148 15 22 35 0 0 chr1 279344339 279344368 -2849296 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr1 279345299 279345322 -2848342 + (A)n Simple_repeat Simple_repeat 1 23 0 1976 125 24 0 chr1 279345544 279345833 -2847831 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1 279346084 279346106 -2847558 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1 279346394 279346432 -2847232 + AT_rich Low_complexity Low_complexity 1 38 0 1789 154 19 26 chr1 279347375 279347646 -2846018 - Tigger3(Golem) DNA MER2_type -1 3027 2757 1577 226 0 0 chr1 279347646 279347943 -2845721 + AluJo SINE Alu 1 297 -15 1789 154 19 26 chr1 279347943 279347982 -2845682 - Tigger3(Golem) DNA MER2_type -271 2757 2719 1708 71 5 0 chr1 279348098 279348322 -2845342 + L1P LINE L1 2497 2721 -3425 456 279 59 78 chr1 279348317 279348790 -2844874 - HAL1 LINE L1 -932 1575 1112 * 281 245 0 0 chr1 279349062 279349111 -2844553 + AluY SINE Alu 133 181 -120 330 167 0 0 chr1 279349111 279349171 -2844493 + (TA)n Simple_repeat Simple_repeat 2 61 0 297 0 0 0 chr1 279350256 279350289 -2843375 + (T)n Simple_repeat Simple_repeat 1 33 0 1574 165 0 15 chr1 279350349 279350621 -2843043 + AluSx SINE Alu 42 309 -3 212 172 31 47 chr1 279350710 279350774 -2842890 + A-rich Low_complexity Low_complexity 1 63 0 309 249 149 0 chr1 279351815 279351962 -2841702 - MIR SINE MIR -58 204 36 207 83 42 21 chr1 279351973 279352021 -2841643 + (TA)n Simple_repeat Simple_repeat 1 49 0 33 0 0 0 chr1 279352479 279352512 -2841152 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr1 279352596 279352620 -2841044 + (TC)n Simple_repeat Simple_repeat 2 25 0 206 173 0 58 chr1 279352620 279352672 -2840992 + (TA)n Simple_repeat Simple_repeat 1 49 0 2437 60 0 47 chr1 279353781 279354100 -2839564 - AluY SINE Alu -7 304 1 2107 118 30 3 chr1 279354251 279354548 -2839116 - AluSx SINE Alu -7 305 1 989 95 0 0 chr1 279356109 279356246 -2837418 - L1MA1 LINE L1 -3 6299 6163 396 240 29 19 chr1 279357117 279357221 -2836443 - MIR SINE MIR -90 172 68 2850 134 13 2 chr1 279357860 279358315 -2835349 - L1PA16 LINE L1 -8 6861 6402 722 251 18 0 chr1 279358315 279358534 -2835130 - L1 LINE L1 -1609 4537 4315 1157 151 37 37 chr1 279358540 279358785 -2834879 - L1PA16 LINE L1 -461 6408 6164 10265 220 51 27 chr1 279358795 279360624 -2833040 - L1PA16 LINE L1 -895 5954 4013 2985 67 67 9 chr1 279360624 279360663 -2833001 - MLT2A1 LTR ERVL 0 444 409 582 109 0 0 chr1 279360663 279360764 -2832900 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 2985 67 67 9 chr1 279360764 279361144 -2832520 - MLT2A1 LTR ERVL -35 409 1 10265 220 51 27 chr1 279361144 279362501 -2831163 - L1PA16 LINE L1 -2836 4013 2689 520 73 37 24 chr1 279362501 279362583 -2831081 + MSTB LTR MaLR 1 83 -345 872 197 81 36 chr1 279362587 279362768 -2830896 + MSTB LTR MaLR 194 388 -38 2397 91 0 0 chr1 279362768 279363064 -2830600 - AluSg SINE Alu -14 296 1 872 197 81 36 chr1 279363064 279363105 -2830559 + MSTB LTR MaLR 388 426 0 10862 148 29 23 chr1 279363105 279365054 -2828610 - L1PA16 LINE L1 -4156 2693 734 1021 164 5 61 chr1 279365055 279365153 -2828511 - L1PA16 LINE L1 -6647 202 120 2056 91 67 3 chr1 279365153 279365461 -2828203 - AluSc SINE Alu 0 326 1 1021 164 5 61 chr1 279365461 279365574 -2828090 - L1PA16 LINE L1 -6729 120 2 261 0 0 0 chr1 279365773 279365802 -2827862 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2231 78 3 0 chr1 279365804 279366087 -2827577 - AluY SINE Alu -27 284 1 532 262 28 14 chr1 279367101 279367246 -2826418 - MIR SINE MIR -4 258 112 189 237 17 51 chr1 279367298 279367357 -2826307 - L2 LINE L2 -5 3267 3211 230 350 0 0 chr1 279367397 279367457 -2826207 + L2 LINE L2 3205 3264 -8 603 288 21 50 chr1 279367897 279368137 -2825527 + MIR SINE MIR 30 262 0 695 198 0 0 chr1 279369103 279369219 -2824445 + FLAM_C SINE Alu 2 117 -16 213 264 198 8 chr1 279369562 279369683 -2823981 - MIR SINE MIR 0 262 119 1519 185 14 24 chr1 279369875 279370162 -2823502 - AluJo SINE Alu -17 295 12 271 250 125 14 chr1 279371199 279371271 -2822393 + L2 LINE L2 3187 3266 -6 961 108 0 36 chr1 279371370 279371509 -2822155 + AluSg/x SINE Alu 123 256 -56 320 152 15 0 chr1 279371509 279371575 -2822089 + GA-rich Low_complexity Low_complexity 1 67 0 210 128 0 43 chr1 279372117 279372164 -2821500 + (TTTTA)n Simple_repeat Simple_repeat 4 48 0 3734 71 6 24 chr1 279372788 279373156 -2820508 + MER41A LTR ERV1 1 357 -197 1933 120 6 29 chr1 279373156 279373472 -2820192 + AluSc SINE Alu 1 309 0 3734 71 6 24 chr1 279373472 279373641 -2820023 + MER41A LTR ERV1 357 528 -26 1640 194 6 19 chr1 279374257 279374610 -2819054 - AluJb SINE Alu 0 350 2 8013 198 36 22 chr1 279375037 279377881 -2815783 - L1MB3 LINE L1 -2 6181 3377 2304 107 0 19 chr1 279377881 279378199 -2815465 - AluSx SINE Alu 0 312 1 8013 198 36 22 chr1 279378199 279378325 -2815339 - L1MB3 LINE L1 -2806 3377 3254 2217 99 26 0 chr1 279378325 279378628 -2815036 - AluSq SINE Alu -2 311 1 8013 198 36 22 chr1 279378628 279378741 -2814923 - L1MB3 LINE L1 -2929 3254 3073 329 218 194 16 chr1 279379904 279380028 -2813636 - MER58B DNA MER1_type 0 341 196 337 304 20 10 chr1 279380063 279380165 -2813499 + MIR SINE MIR 15 117 -145 266 320 13 0 chr1 279380165 279380243 -2813421 + MIR SINE MIR 36 114 -148 281 298 12 12 chr1 279380245 279380329 -2813335 + MIR SINE MIR 34 117 -145 200 351 26 0 chr1 279380329 279380406 -2813258 + MIR SINE MIR 36 114 -148 308 274 12 12 chr1 279380408 279380492 -2813172 + MIR SINE MIR 34 117 -145 242 316 13 13 chr1 279380492 279380571 -2813093 + MIR SINE MIR 36 114 -148 282 298 12 12 chr1 279380573 279380657 -2813007 + MIR SINE MIR 34 117 -145 223 355 13 0 chr1 279380657 279380733 -2812931 + MIR SINE MIR 36 112 -150 240 346 13 0 chr1 279380737 279380815 -2812849 + MIR SINE MIR 34 112 -150 254 346 13 0 chr1 279380819 279380897 -2812767 + MIR SINE MIR 34 112 -150 272 309 12 12 chr1 279380901 279380985 -2812679 + MIR SINE MIR 34 117 -145 242 301 12 24 chr1 279380985 279381068 -2812596 + MIR SINE MIR 36 117 -145 249 304 13 13 chr1 279381149 279381228 -2812436 + MIR SINE MIR 34 112 -150 282 298 12 12 chr1 279381232 279381316 -2812348 + MIR SINE MIR 34 117 -145 256 333 13 0 chr1 279381397 279381475 -2812189 + MIR SINE MIR 34 112 -150 270 282 12 24 chr1 279381479 279381564 -2812100 + MIR SINE MIR 34 117 -145 212 325 12 24 chr1 279381564 279381647 -2812017 + MIR SINE MIR 36 117 -145 * 640 291 35 20 chr1 279381645 279381844 -2811820 + MIR SINE MIR 34 235 -27 2185 204 69 45 chr1 279381966 279382209 -2811455 + L1ME1 LINE L1 5346 5582 -584 180 0 0 0 chr1 279382209 279382229 -2811435 + (CCA)n Simple_repeat Simple_repeat 1 20 0 2185 204 69 45 chr1 279382229 279382687 -2810977 + L1ME1 LINE L1 5582 6063 -103 1685 248 56 44 chr1 279383012 279383584 -2810080 + MLT1E LTR MaLR 7 585 -8 2437 81 3 0 chr1 279383989 279384296 -2809368 + AluSx SINE Alu 1 308 -4 225 258 121 0 chr1 279384545 279384611 -2809053 + MIR3 SINE MIR 129 202 -6 527 151 0 12 chr1 279385258 279385344 -2808320 + FLAM_A SINE Alu 32 116 -26 320 325 0 34 chr1 279386078 279386195 -2807469 - MIR SINE MIR -1 261 149 220 244 67 76 chr1 279386280 279386399 -2807265 + L2 LINE L2 3182 3299 -14 192 299 15 15 chr1 279386438 279386505 -2807159 - L2 LINE L2 -22 3250 3184 1555 141 0 116 chr1 279386936 279387263 -2806401 + AluJo SINE Alu 1 289 -13 31 0 0 0 chr1 279387263 279387294 -2806370 + AT_rich Low_complexity Low_complexity 1 31 0 236 346 106 10 chr1 279387892 279387996 -2805668 + MIR SINE MIR 6 119 -143 2434 88 0 0 chr1 279389157 279389465 -2804199 - AluSg SINE Alu -2 308 1 550 249 57 18 chr1 279389486 279389715 -2803949 - L1M4 LINE L1 -2225 3921 3684 3384 92 2 0 chr1 279389719 279390186 -2803478 - L1PB1 LINE L1 0 6151 5684 2753 130 25 4 chr1 279390186 279390928 -2802736 + L1PB1 LINE L1 4934 5687 -464 448 99 0 14 chr1 279391010 279391081 -2802583 - L1PA10 LINE L1 0 6168 6099 311 247 118 0 chr1 279391382 279391467 -2802197 + L2 LINE L2 3173 3267 -5 2025 136 10 3 chr1 279391620 279391921 -2801743 - AluSx SINE Alu -9 303 1 433 231 51 17 chr1 279392236 279392353 -2801311 + MIR SINE MIR 34 154 -108 330 256 58 58 chr1 279392679 279392809 -2800855 - MER5B DNA MER1_type -18 160 28 1866 117 4 0 chr1 279392809 279393056 -2800608 - AluSx SINE Alu -7 305 58 330 256 58 58 chr1 279393056 279393081 -2800583 - MER5B DNA MER1_type -149 29 5 2288 95 0 7 chr1 279393571 279393865 -2799799 + AluSq SINE Alu 1 292 -21 1268 218 96 21 chr1 279393893 279394320 -2799344 + LTR37B LTR ERV1 10 468 0 191 209 23 0 chr1 279394409 279394452 -2799212 + MIR SINE MIR 209 252 -10 22 0 0 0 chr1 279396257 279396279 -2797385 + AT_rich Low_complexity Low_complexity 1 22 0 637 301 74 43 chr1 279398543 279398935 -2794729 + L2 LINE L2 1822 2225 -1089 239 143 102 0 chr1 279399169 279399218 -2794446 - L2 LINE L2 -1 3271 3218 355 225 39 108 chr1 279399314 279399345 -2794319 + MIR SINE MIR 82 114 -148 2225 116 0 0 chr1 279399345 279399638 -2794026 - AluSx SINE Alu -19 293 1 355 225 39 108 chr1 279399638 279399735 -2793929 + MIR SINE MIR 114 201 -61 36 82 0 0 chr1 279401240 279401325 -2792339 + AT_rich Low_complexity Low_complexity 1 85 0 217 361 206 8 chr1 279401802 279402190 -2791474 - L2 LINE L2 -1020 2294 1830 24 0 0 0 chr1 279402965 279402989 -2790675 + AT_rich Low_complexity Low_complexity 1 24 0 368 291 140 37 chr1 279403612 279403963 -2789701 + L1ME LINE L1 5403 5789 -332 * 5141 119 14 0 chr1 279403955 279404745 -2788919 + L1PA13 LINE L1 5363 6163 0 311 279 88 27 chr1 279404821 279404968 -2788696 + HAL1b LINE L1 1187 1342 -6 827 250 73 26 chr1 279405306 279405538 -2788126 + MIR SINE MIR 19 261 -1 191 310 70 0 chr1 279406009 279406109 -2787555 - L2 LINE L2 -91 3222 3116 377 284 69 0 chr1 279406409 279406525 -2787139 + L2 LINE L2 3149 3272 0 974 320 69 33 chr1 279406647 279407137 -2786527 + MLT1K LTR MaLR 59 566 -22 433 292 45 19 chr1 279407333 279407487 -2786177 - Charlie8 DNA MER1_type -2143 274 117 455 264 142 0 chr1 279407816 279407964 -2785700 + MIR SINE MIR 31 199 -63 394 137 15 43 chr1 279407968 279408062 -2785602 + MLT1E1 LTR MaLR 1 614 -40 890 221 187 14 chr1 279408068 279408362 -2785302 + MER2 DNA MER2_type 1 345 0 302 211 0 0 chr1 279408403 279408460 -2785204 + MIR SINE MIR 203 259 -3 1702 114 38 30 chr1 279410808 279411070 -2782594 + AluSx SINE Alu 28 291 -21 2729 23 0 0 chr1 279412125 279412431 -2781233 - AluY SINE Alu -5 306 1 25 51 0 0 chr1 279413165 279413204 -2780460 + AT_rich Low_complexity Low_complexity 1 39 0 2395 88 0 0 chr1 279415396 279415701 -2777963 - AluSg SINE Alu -5 305 1 269 194 0 15 chr1 279416345 279416412 -2777252 + (CA)n Simple_repeat Simple_repeat 2 67 0 1857 143 31 0 chr1 279417638 279417931 -2775733 - AluJb SINE Alu -8 304 3 203 295 111 121 chr1 279419726 279419916 -2773748 + MIR3 SINE MIR 16 203 -5 208 371 124 6 chr1 279420204 279420382 -2773282 - L3 LINE CR1 -6 1571 1373 710 193 0 0 chr1 279420973 279421082 -2772582 + FLAM_A SINE Alu 6 114 -28 1933 113 6 66 chr1 279421089 279421408 -2772256 - AluSq SINE Alu -13 300 1 2184 96 0 3 chr1 279421528 279421819 -2771845 + AluSc SINE Alu 19 308 -1 1082 197 113 81 chr1 279422192 279422439 -2771225 + Cheshire DNA MER1_type 1 263 -2157 735 117 33 0 chr1 279422439 279422559 -2771105 + L1MA8 LINE L1 6163 6286 -5 1082 197 113 81 chr1 279422559 279422646 -2771018 + Cheshire DNA MER1_type 263 346 -2074 265 197 33 0 chr1 279422643 279422704 -2770960 + Cheshire DNA MER1_type 2343 2405 -15 * 28 64 0 26 chr1 279422854 279422897 -2770767 + AT_rich Low_complexity Low_complexity 1 43 -33 1641 169 47 11 chr1 279422897 279423175 -2770489 + AluJo SINE Alu 1 288 -24 28 64 0 26 chr1 279423175 279423209 -2770455 + AT_rich Low_complexity Low_complexity 43 76 0 184 299 104 0 chr1 279423310 279423377 -2770287 - L2 LINE L2 -60 3253 3180 21 0 0 0 chr1 279425485 279425506 -2768158 + AT_rich Low_complexity Low_complexity 1 21 0 347 281 148 0 chr1 279426122 279426250 -2767414 - MIR SINE MIR -27 235 89 524 190 112 0 chr1 279426313 279426429 -2767235 - FRAM SINE Alu -16 160 32 1893 142 3 27 chr1 279426556 279426852 -2766812 - AluJo SINE Alu -23 289 1 1874 147 3 10 chr1 279426880 279427180 -2766484 + AluSx SINE Alu 2 299 -13 189 388 108 14 chr1 279427676 279427890 -2765774 + L2 LINE L2 313 546 -2768 249 269 9 37 chr1 279428742 279428850 -2764814 + L1MC5 LINE L1 7827 7931 -30 2308 92 0 3 chr1 279428928 279429234 -2764430 + AluSq SINE Alu 1 305 -8 269 112 0 124 chr1 279429508 279429669 -2763995 + (GGGA)n Simple_repeat Simple_repeat 1 141 0 252 185 0 85 chr1 279429685 279430071 -2763593 + GA-rich Low_complexity Low_complexity 1 353 0 1811 118 71 37 chr1 279431272 279431569 -2762095 + AluSx SINE Alu 1 307 -5 2170 110 3 0 chr1 279432692 279432993 -2760671 + AluSx SINE Alu 1 302 -10 7478 32 0 1 chr1 279433428 279434520 -2759144 - L1PA3 LINE L1 0 6155 5106 1859 167 0 3 chr1 279435636 279435929 -2757735 + AluJo SINE Alu 5 296 -16 6728 137 42 48 chr1 279436439 279437304 -2756360 + Tigger1 DNA MER2_type 1 858 -1560 2057 118 0 7 chr1 279437304 279437592 -2756072 + AluSx SINE Alu 1 286 -26 6728 137 42 48 chr1 279437592 279437951 -2755713 + Tigger1 DNA MER2_type 858 1218 -1200 596 174 7 62 chr1 279437939 279438083 -2755581 + Tigger1 DNA MER2_type 1600 1735 -683 * 5475 140 19 28 chr1 279438083 279438377 -2755287 + L1PA16 LINE L1 5040 5335 -831 1795 143 0 49 chr1 279438377 279438685 -2754979 + AluJb SINE Alu 8 300 -12 5475 140 19 28 chr1 279438685 279439502 -2754162 + L1PA16 LINE L1 5335 6151 -15 877 125 7 14 chr1 279439539 279439683 -2753981 + Tigger1 DNA MER2_type 1729 1871 -547 * 2404 154 52 2 chr1 279439659 279440081 -2753583 + Tigger1 DNA MER2_type 1974 2416 -2 553 181 35 9 chr1 279440793 279440909 -2752755 - MER94 DNA DNA -12 122 4 210 287 90 41 chr1 279441395 279441517 -2752147 - MIR SINE MIR -8 254 127 411 225 49 14 chr1 279441980 279442122 -2751542 - MER103 DNA DNA -6 160 14 2428 241 83 12 chr1 279443576 279444302 -2749362 + MER20B DNA MER1_type 1 777 -6 1433 202 114 17 chr1 279444442 279444803 -2748861 + MSTD LTR MaLR 1 396 0 257 362 20 13 chr1 279445360 279445512 -2748152 + L1MC/D LINE L1 5502 5654 -2154 810 195 12 112 chr1 279445548 279445789 -2747875 + AluJb SINE Alu 85 301 -11 477 241 117 0 chr1 279447800 279447937 -2745727 + MER58B DNA MER1_type 189 341 0 344 333 37 0 chr1 279448504 279448612 -2745052 + L2 LINE L2 2589 2700 -614 21 36 0 0 chr1 279448715 279448743 -2744921 + AT_rich Low_complexity Low_complexity 1 28 0 300 41 306 0 chr1 279448743 279448792 -2744872 + MADE1 DNA Mariner 1 64 -16 832 153 30 0 chr1 279448832 279448963 -2744701 - AluJo SINE Alu -177 135 1 2374 237 128 9 chr1 279448963 279449723 -2743941 - L1ME2 LINE L1 -60 6104 5255 228 228 0 0 chr1 279449738 279449795 -2743869 + GA-rich Low_complexity Low_complexity 1 57 0 876 222 141 25 chr1 279449799 279450160 -2743504 - L1ME2 LINE L1 -916 5230 4828 982 205 53 53 chr1 279450170 279450186 -2743478 + MER74B LTR ERVL 70 85 -537 1305 170 30 4 chr1 279450186 279450416 -2743248 - MER46A DNA MER2_type 0 236 1 982 205 53 53 chr1 279450416 279450702 -2742962 + MER74B LTR ERVL 84 372 -250 3899 148 44 35 chr1 279450702 279450782 -2742882 + L1MCa LINE L1 644 722 -5704 2379 78 3 0 chr1 279450782 279451089 -2742575 + AluY SINE Alu 1 308 -3 3899 148 44 35 chr1 279451089 279451201 -2742463 + L1MCa LINE L1 722 831 -5595 2193 136 30 14 chr1 279451201 279451570 -2742094 - THE1C LTR MaLR 0 375 1 3899 148 44 35 chr1 279451570 279452215 -2741449 + L1MCa LINE L1 831 1490 -4936 682 240 78 6 chr1 279452323 279452592 -2741072 + MSTC LTR MaLR 1 310 -55 3538 135 14 54 chr1 279452592 279452913 -2740751 + L1PA16 LINE L1 5525 5807 -359 2184 119 0 0 chr1 279452913 279453206 -2740458 + AluSx SINE Alu 1 293 -19 3538 135 14 54 chr1 279453206 279453549 -2740115 + L1PA16 LINE L1 5807 6162 -4 379 151 14 0 chr1 279453571 279453644 -2740020 + MSTC LTR MaLR 384 457 0 3458 174 65 21 chr1 279453644 279454102 -2739562 + L1MCa LINE L1 1683 2119 -4488 1699 169 0 10 chr1 279454102 279454392 -2739272 + AluJb SINE Alu 1 287 -25 3458 174 65 21 chr1 279454392 279454906 -2738758 + L1MCa LINE L1 2119 2662 -3945 204 306 0 0 chr1 279454909 279454958 -2738706 + L2 LINE L2 3011 3059 -254 522 346 167 25 chr1 279455123 279455609 -2738055 - L2 LINE L2 -615 2699 2145 1934 146 3 10 chr1 279456635 279456944 -2736720 + AluSx SINE Alu 3 309 -3 1442 203 13 29 chr1 279458026 279458341 -2735323 + AluJo SINE Alu 1 310 -2 592 319 102 18 chr1 279458405 279458631 -2735033 + MIR SINE MIR 18 262 0 264 330 31 10 chr1 279458636 279458733 -2734931 - MIR SINE MIR -70 138 40 459 331 194 10 chr1 279459110 279459409 -2734255 + L1MC4a LINE L1 5546 5899 -1909 917 183 5 5 chr1 279460090 279460292 -2733372 + L1PB1 LINE L1 2 203 -6660 * 8493 108 157 8 chr1 279460287 279461872 -2731792 + L1PB1 LINE L1 634 2454 -4409 3487 93 8 21 chr1 279461872 279462400 -2731264 + MER41A LTR ERV1 1 521 -33 14011 170 17 4 chr1 279462406 279465003 -2728661 + L1PB1 LINE L1 2451 5180 -1687 189 0 0 0 chr1 279465003 279465024 -2728640 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 14011 170 17 4 chr1 279465024 279466734 -2726930 + L1PB1 LINE L1 5180 6867 0 308 82 20 0 chr1 279466865 279466914 -2726750 - L1MB4 LINE L1 -10 6170 6121 7631 43 5 13 chr1 279467205 279468719 -2724945 + SVA Other Other 1 1386 0 957 194 82 41 chr1 279468736 279469004 -2724660 + MLT1D LTR MaLR 181 459 -46 373 261 9 26 chr1 279469169 279469284 -2724380 - MIR SINE MIR -19 243 131 181 302 19 0 chr1 279469573 279469626 -2724038 - MIR SINE MIR -206 56 3 423 291 123 17 chr1 279469638 279469960 -2723704 + L1M4 LINE L1 2193 2542 -3604 1483 129 4 39 chr1 279470066 279470298 -2723366 + AluJb SINE Alu 82 305 -7 27 0 0 0 chr1 279471340 279471367 -2722297 + AT_rich Low_complexity Low_complexity 1 27 0 2315 82 38 0 chr1 279471442 279471733 -2721931 + AluSg SINE Alu 1 302 -8 683 341 44 20 chr1 279471832 279472128 -2721536 + L3 LINE CR1 1274 1576 -1 1657 116 4 0 chr1 279472287 279472512 -2721152 - AluSx SINE Alu -86 226 1 2964 99 33 35 chr1 279473347 279473801 -2719863 + MLT2A2 LTR ERVL 1 453 0 289 302 142 6 chr1 279473802 279473971 -2719693 + MIR SINE MIR 70 261 -1 1908 156 0 35 chr1 279474303 279474618 -2719046 - AluJo SINE Alu -8 304 1 333 286 133 38 chr1 279475209 279475413 -2718251 + MIR SINE MIR 30 240 -22 725 201 92 16 chr1 279477389 279477573 -2716091 + AluSx SINE Alu 21 218 -94 245 306 83 0 chr1 279477884 279478028 -2715636 + L1ME4a LINE L1 5963 6118 -3 26 50 0 0 chr1 279478197 279478237 -2715427 + AT_rich Low_complexity Low_complexity 1 40 0 241 232 101 0 chr1 279478717 279478786 -2714878 - L2 LINE L2 0 3272 3197 1848 233 52 7 chr1 279479022 279479468 -2714196 - MER82 DNA MER2_type 0 653 188 804 132 0 8 chr1 279479470 279479591 -2714073 + AluSq/x SINE Alu 1 120 -193 2234 106 0 7 chr1 279479591 279479893 -2713771 + AluSx SINE Alu 1 300 -12 933 185 0 26 chr1 279479893 279480088 -2713576 - MER82 DNA MER2_type -462 191 2 279 0 0 0 chr1 279480106 279480137 -2713527 + (T)n Simple_repeat Simple_repeat 1 31 0 2240 125 0 0 chr1 279480498 279480810 -2712854 - AluSx SINE Alu 0 312 1 2218 76 4 0 chr1 279481115 279481391 -2712273 + AluSq SINE Alu 27 303 -10 1483 189 82 55 chr1 279481463 279481598 -2712066 - Charlie1b DNA MER1_type -2244 517 387 2141 106 14 0 chr1 279481598 279481880 -2711784 + AluSx SINE Alu 1 286 -26 1483 189 82 55 chr1 279481880 279482147 -2711517 - Charlie1b DNA MER1_type -2374 387 97 2375 96 3 0 chr1 279482147 279482449 -2711215 - AluSp SINE Alu -10 303 1 1483 189 82 55 chr1 279482449 279482536 -2711128 - Charlie1b DNA MER1_type -2664 97 14 498 291 77 26 chr1 279482540 279482880 -2710784 - L1ME LINE L1 -505 5661 5305 2997 61 28 0 chr1 279483042 279483435 -2710229 + MLT2A1 LTR ERVL 1 404 -40 183 156 0 0 chr1 279483437 279483469 -2710195 + (CATATA)n Simple_repeat Simple_repeat 6 37 0 480 72 78 12 chr1 279483500 279483666 -2709998 + (TA)n Simple_repeat Simple_repeat 1 177 0 24 0 0 0 chr1 279483810 279483834 -2709830 + AT_rich Low_complexity Low_complexity 1 24 0 325 68 0 68 chr1 279483835 279483848 -2709816 + MLT2A1 LTR ERVL 390 402 -42 381 43 0 0 chr1 279483848 279483895 -2709769 + (CA)n Simple_repeat Simple_repeat 2 48 0 325 68 0 68 chr1 279483895 279483940 -2709724 + MLT2A1 LTR ERVL 402 444 0 194 339 149 6 chr1 279483941 279484109 -2709555 + MIR SINE MIR 70 261 -1 2089 138 0 25 chr1 279484498 279484818 -2708846 + AluSx SINE Alu 1 312 0 194 342 101 0 chr1 279485370 279485449 -2708215 - L2 LINE L2 -23 3249 3163 196 301 0 68 chr1 279485491 279485564 -2708100 - L2 LINE L2 -16 3256 3189 * 298 273 193 75 chr1 279485549 279485937 -2707727 - L2 LINE L2 -2436 878 445 291 250 119 38 chr1 279485952 279486112 -2707552 - MLT1J LTR MaLR -338 173 1 193 370 0 30 chr1 279486383 279486483 -2707181 + L2 LINE L2 3176 3272 0 2521 199 52 106 chr1 279486559 279487922 -2705742 + L1M3e LINE L1 499 1788 -5242 205 218 287 0 chr1 279488184 279488271 -2705393 + MER5B DNA MER1_type 67 178 0 575 125 0 0 chr1 279488460 279488540 -2705124 + AluS SINE Alu 1 80 -233 2287 92 0 3 chr1 279489182 279489477 -2704187 - AluSx SINE Alu -18 294 1 45 34 0 0 chr1 279490185 279490244 -2703420 + AT_rich Low_complexity Low_complexity 1 59 0 494 182 61 10 chr1 279490559 279490658 -2703006 - MER5A DNA MER1_type -77 112 9 2204 86 0 0 chr1 279490699 279490968 -2702696 - AluY SINE Alu -42 269 1 520 333 41 15 chr1 279491019 279491289 -2702375 - MER90 LTR ERV1 -48 566 290 638 181 17 9 chr1 279491289 279491405 -2702259 + FLAM_C SINE Alu 1 117 -26 21 36 0 0 chr1 279491411 279491439 -2702225 + AT_rich Low_complexity Low_complexity 1 28 0 356 301 155 38 chr1 279491973 279492186 -2701478 + MIR SINE MIR 7 244 -18 329 340 227 28 chr1 279492238 279492485 -2701179 - L2 LINE L2 0 3272 2977 330 236 57 28 chr1 279492532 279492638 -2701026 + L1M4b LINE L1 59 167 -6692 969 95 0 0 chr1 279494897 279495023 -2698641 + FRAM SINE Alu 50 175 -1 464 276 99 48 chr1 279495040 279495317 -2698347 + L1M4b LINE L1 2523 2784 -4354 1146 141 115 52 chr1 279495317 279495622 -2698042 - MER33 DNA MER1_type 0 324 1 180 0 0 0 chr1 279495630 279495650 -2698014 + (CAA)n Simple_repeat Simple_repeat 1 20 0 464 276 99 48 chr1 279495650 279495866 -2697798 + L1M4b LINE L1 2790 3051 -4087 1406 231 22 0 chr1 279495884 279496157 -2697507 + AluJo SINE Alu 1 279 -33 677 168 8 0 chr1 279496158 279496289 -2697375 + GA-rich Low_complexity Low_complexity 1 132 0 552 186 68 8 chr1 279496292 279496480 -2697184 + L1M4b LINE L1 3013 3224 -3733 279 318 0 24 chr1 279496887 279496972 -2696692 + L2 LINE L2 3188 3270 -2 479 254 9 0 chr1 279497128 279497242 -2696422 - MIR SINE MIR 0 262 148 1538 171 36 7 chr1 279497249 279497529 -2696135 - AluJo SINE Alu -24 288 1 1107 225 74 3 chr1 279497582 279497893 -2695771 + L1ME2 LINE L1 5293 5625 -553 586 226 32 26 chr1 279497895 279498050 -2695614 + L1MB8 LINE L1 6017 6172 -6 1484 172 3 57 chr1 279498348 279498645 -2695019 + AluJo SINE Alu 12 292 -20 1039 176 198 58 chr1 279501367 279501696 -2691968 + THE1C LTR MaLR 1 375 0 1815 177 32 10 chr1 279501862 279502172 -2691492 + MER1B DNA MER1_type 23 339 0 1845 190 42 165 chr1 279502382 279502720 -2690944 - LTR8A LTR ERV1 0 727 349 186 43 0 0 chr1 279502720 279502743 -2690921 + (GGGGA)n Simple_repeat Simple_repeat 4 26 0 180 0 0 0 chr1 279502747 279502767 -2690897 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1845 190 42 165 chr1 279502767 279503211 -2690453 - LTR8A LTR ERV1 -381 346 37 2262 112 0 6 chr1 279503792 279504104 -2689560 - AluSx SINE Alu -2 310 1 1677 177 0 32 chr1 279504109 279504425 -2689239 - AluJb SINE Alu -6 306 1 339 264 182 0 chr1 279504963 279505073 -2688591 - L2 LINE L2 -1 3271 3142 806 192 0 0 chr1 279505184 279505314 -2688350 - FLAM_A SINE Alu -2 131 2 835 128 0 8 chr1 279505996 279506113 -2687551 + FLAM_C SINE Alu 3 118 -15 2109 127 7 0 chr1 279506120 279506412 -2687252 - AluSx SINE Alu -18 294 1 24 0 0 0 chr1 279506412 279506436 -2687228 + AT_rich Low_complexity Low_complexity 1 24 0 2361 75 10 0 chr1 279506508 279506802 -2686862 - AluSp SINE Alu -16 297 1 1160 180 5 18 chr1 279507993 279508210 -2685454 + AluJo SINE Alu 1 214 -98 315 288 78 42 chr1 279508417 279508608 -2685056 + L1ME2 LINE L1 5725 5922 -244 945 168 110 21 chr1 279509472 279509663 -2684001 - MER3 DNA MER1_type -1 208 1 1115 133 13 76 chr1 279509683 279509741 -2683923 - L1MA5 LINE L1 0 6300 6240 1963 168 0 0 chr1 279509741 279510032 -2683632 - AluJb SINE Alu -21 291 1 1115 133 13 76 chr1 279510032 279510198 -2683466 - L1MA5 LINE L1 -60 6240 6090 2589 55 0 6 chr1 279510407 279510718 -2682946 + AluY SINE Alu 1 309 -2 190 313 0 78 chr1 279510721 279510785 -2682879 + MIR SINE MIR 20 78 -184 809 146 23 23 chr1 279510874 279511004 -2682660 - FLAM_C SINE Alu -3 130 1 530 219 8 0 chr1 279511004 279511127 -2682537 + MIR SINE MIR 137 260 -2 836 263 9 23 chr1 279511365 279511582 -2682082 - MIR SINE MIR -27 235 22 325 224 53 0 chr1 279511814 279511890 -2681774 + MER20B DNA MER1_type 10 89 -694 871 254 123 68 chr1 279511977 279512264 -2681400 + MER20B DNA MER1_type 243 571 -212 1508 185 10 134 chr1 279512264 279512340 -2681324 - MLT1A1 LTR MaLR 0 365 281 2219 89 11 0 chr1 279512340 279512649 -2681015 + AluSq SINE Alu 1 312 0 1508 185 10 134 chr1 279512649 279512988 -2680676 - MLT1A1 LTR MaLR -84 281 1 871 254 123 68 chr1 279512988 279513204 -2680460 + MER20B DNA MER1_type 571 774 -9 2356 111 0 0 chr1 279513444 279513750 -2679914 - AluSx SINE Alu -6 306 1 18280 33 8 0 chr1 279513776 279515961 -2677703 - L1PA4 LINE L1 -806 5340 3139 7306 30 0 0 chr1 279515961 279516769 -2676895 + L1PA4 LINE L1 5346 6155 0 2035 90 8 4 chr1 279517391 279517659 -2676005 + AluSq SINE Alu 35 303 -10 301 267 111 11 chr1 279517720 279517810 -2675854 - MIR SINE MIR -78 184 86 811 252 101 5 chr1 279517911 279518129 -2675535 - MIR SINE MIR -21 241 3 1918 176 102 13 chr1 279518264 279518657 -2675007 + MSTA LTR MaLR 1 428 0 265 269 0 0 chr1 279519375 279519442 -2674222 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 2308 109 3 0 chr1 279519486 279519797 -2673867 - AluSx SINE Alu 0 312 1 377 249 161 36 chr1 279520138 279520331 -2673333 - MIR SINE MIR 0 262 46 700 171 32 32 chr1 279520380 279520503 -2673161 - FLAM_A SINE Alu -10 123 1 321 87 0 0 chr1 279520786 279520832 -2672832 - MADE1 DNA Mariner 0 80 35 2318 186 103 27 chr1 279521458 279522049 -2671615 + LTR48 LTR ERV1 1 636 -151 1684 234 30 127 chr1 279522049 279522814 -2670850 - LTR8 LTR ERV1 0 691 1 588 183 61 30 chr1 279522815 279522946 -2670718 + LTR48 LTR ERV1 634 768 -19 233 246 31 0 chr1 279522991 279523056 -2670608 + L1M3 LINE L1 5861 5927 -253 2835 118 52 9 chr1 279523077 279523518 -2670146 - LTR1 LTR ERV1 -9 776 317 850 183 43 16 chr1 279523606 279523792 -2669872 + LTR7 LTR ERV1 1 191 -259 909 76 0 8 chr1 279524020 279524139 -2669525 + LTR7 LTR ERV1 333 450 0 1286 142 58 12 chr1 279524169 279524409 -2669255 - LTR1 LTR ERV1 -534 251 1 1418 147 0 30 chr1 279524441 279524672 -2668992 + MER1B DNA MER1_type 116 339 0 2094 97 7 21 chr1 279524702 279524992 -2668672 + AluSc SINE Alu 9 294 -15 1160 180 143 4 chr1 279526601 279526846 -2666818 - MLT2B1 LTR ERVL -215 305 27 213 374 168 0 chr1 279527079 279527186 -2666478 - MIR3 SINE MIR -18 190 66 2227 100 10 7 chr1 279527201 279527500 -2666164 - AluSx SINE Alu -10 302 3 422 239 196 0 chr1 279527633 279527796 -2665868 - L2 LINE L2 -13 3300 3106 2350 103 0 3 chr1 279527796 279528107 -2665557 + AluSg SINE Alu 1 310 0 974 242 5 5 chr1 279528201 279528420 -2665244 + AluJo SINE Alu 3 221 -91 228 304 76 0 chr1 279528556 279528635 -2665029 - L2 LINE L2 -453 2861 2777 929 237 61 4 chr1 279528650 279529189 -2664475 + L1MEc LINE L1 1525 2175 -4221 185 62 0 31 chr1 279529192 279529224 -2664440 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 949 276 50 10 chr1 279530218 279530571 -2663093 + LTR16C LTR ERVL 38 453 -38 330 283 43 101 chr1 279530609 279530788 -2662876 - L1 LINE L1 -1618 4528 4340 712 116 18 27 chr1 279530788 279530900 -2662764 - HY1 scRNA scRNA -1 111 1 330 283 43 101 chr1 279530900 279531015 -2662649 - L1 LINE L1 -1806 4340 4265 1805 156 9 33 chr1 279531015 279531348 -2662316 - L1MB7 LINE L1 -9 6175 5851 330 283 43 101 chr1 279531348 279531490 -2662174 - L1 LINE L1 -1881 4265 4116 27 29 0 0 chr1 279531691 279531725 -2661939 + AT_rich Low_complexity Low_complexity 1 34 0 676 86 69 9 chr1 279531946 279532030 -2661634 - MER6 DNA MER2_type -111 754 660 2760 10 0 0 chr1 279532030 279532328 -2661336 + AluYa5 SINE Alu 12 309 -2 676 86 69 9 chr1 279532328 279532359 -2661305 - MER6 DNA MER2_type -205 660 632 1748 171 35 0 chr1 279532362 279532648 -2661016 + AluJo SINE Alu 1 296 -16 904 243 36 40 chr1 279533213 279533464 -2660200 - MIR SINE MIR 0 262 13 212 234 21 0 chr1 279533464 279533511 -2660153 - MIR SINE MIR -202 60 13 206 234 21 0 chr1 279533511 279533558 -2660106 - MIR SINE MIR -202 60 13 237 203 17 17 chr1 279533558 279533617 -2660047 - MIR SINE MIR -202 60 2 526 254 6 30 chr1 279534097 279534262 -2659402 - MER104 DNA Tc2 -6 174 14 346 342 117 52 chr1 279535339 279535836 -2657828 - L2 LINE L2 -929 2385 1857 2053 137 0 7 chr1 279536228 279536535 -2657129 + AluSx SINE Alu 1 305 -7 5552 164 21 33 chr1 279537736 279538166 -2655498 + L1PA16 LINE L1 4123 4557 -1609 2153 117 0 13 chr1 279538166 279538466 -2655198 + AluSx SINE Alu 8 303 -9 5552 164 21 33 chr1 279538466 279540104 -2653560 + L1PA16 LINE L1 4557 6157 -9 188 333 80 0 chr1 279540708 279540783 -2652881 + L2 LINE L2 3167 3247 -25 500 198 0 10 chr1 279541182 279541283 -2652381 - L1MD3 LINE L1 -12 7983 7884 522 162 38 9 chr1 279541303 279541408 -2652256 - L1MD3 LINE L1 -258 7737 7630 337 162 162 0 chr1 279541430 279541504 -2652160 - L1MD3 LINE L1 -215 7780 7695 2061 99 18 7 chr1 279541673 279541957 -2651707 - AluSq SINE Alu -4 309 23 364 319 65 42 chr1 279542035 279542345 -2651319 - L1MCb LINE L1 -5689 356 40 1052 204 64 76 chr1 279543269 279543441 -2650223 + MER2 DNA MER2_type 7 180 -165 2162 113 0 92 chr1 279543441 279543812 -2649852 - MER1B DNA MER1_type 0 337 1 1052 204 64 76 chr1 279543812 279543911 -2649753 + MER2 DNA MER2_type 180 276 -69 816 194 0 0 chr1 279543911 279544040 -2649624 - FLAM_A SINE Alu -3 130 2 1052 204 64 76 chr1 279544040 279544110 -2649554 + MER2 DNA MER2_type 276 345 0 1596 161 0 8 chr1 279544478 279544738 -2648926 + AluJb SINE Alu 33 290 -22 962 144 60 6 chr1 279544738 279544905 -2648759 + MER6 DNA MER2_type 689 864 -1 291 296 78 0 chr1 279545121 279545236 -2648428 - MIR SINE MIR -17 245 122 1833 176 0 0 chr1 279546381 279546688 -2646976 - AluSx SINE Alu -1 311 5 249 300 89 0 chr1 279546728 279546818 -2646846 - L2 LINE L2 0 3272 3175 2122 104 30 0 chr1 279547055 279547354 -2646310 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr1 279547469 279547491 -2646173 + AT_rich Low_complexity Low_complexity 1 22 0 299 260 27 0 chr1 279548426 279548499 -2645165 - Charlie2a DNA MER1_type -12 2850 2776 663 224 82 0 chr1 279548542 279548725 -2644939 - Charlie2a DNA MER1_type -1199 1663 1466 2318 95 3 0 chr1 279548908 279549204 -2644460 - AluSg SINE Alu -13 297 1 814 281 32 26 chr1 279549219 279549529 -2644135 - Charlie2a DNA MER1_type -2469 313 2 743 246 15 121 chr1 279549678 279549950 -2643714 + MIR SINE MIR 10 252 -10 250 275 12 0 chr1 279549973 279550053 -2643611 - Charlie2a DNA MER1_type -1252 1610 1530 2284 90 0 7 chr1 279551528 279551828 -2641836 + AluSc SINE Alu 1 298 -11 356 297 36 6 chr1 279552676 279552841 -2640823 - L1MC4 LINE L1 -63 7979 7810 1204 106 0 0 chr1 279552845 279553006 -2640658 + AluSg/x SINE Alu 129 289 -21 272 227 0 45 chr1 279553016 279553082 -2640582 - MER5A DNA MER1_type -123 66 4 498 188 230 0 chr1 279553247 279553412 -2640252 + MER89 LTR ERV1 1 203 -356 216 0 0 0 chr1 279553485 279553509 -2640155 + (A)n Simple_repeat Simple_repeat 1 24 0 1898 159 8 42 chr1 279553512 279553727 -2639937 + MER89 LTR ERV1 219 419 -140 1760 175 3 13 chr1 279553727 279554036 -2639628 + AluJb SINE Alu 2 307 -5 1898 159 8 42 chr1 279554036 279554173 -2639491 + MER89 LTR ERV1 419 559 0 192 295 115 26 chr1 279554271 279554349 -2639315 + MIR SINE MIR 31 115 -147 223 286 104 58 chr1 279554391 279554545 -2639119 + MIR SINE MIR 88 248 -14 2321 74 3 13 chr1 279554786 279555084 -2638580 + AluSp SINE Alu 1 295 -18 447 269 0 0 chr1 279555267 279555375 -2638289 + L1ME2 LINE L1 6035 6142 -22 398 294 52 29 chr1 279555387 279555523 -2638141 + L2 LINE L2 3133 3271 -1 380 265 0 43 chr1 279555867 279555984 -2637680 + L2 LINE L2 3200 3311 -2 3150 158 15 4 chr1 279556061 279556585 -2637079 + L1MC1 LINE L1 5789 6318 -15 197 257 54 27 chr1 279556782 279556856 -2636808 + MIR3 SINE MIR 118 193 -15 380 297 67 52 chr1 279556888 279557004 -2636660 + L1 LINE L1 3589 3702 -2444 1698 159 37 14 chr1 279557004 279557300 -2636364 + AluSx SINE Alu 1 303 -9 380 297 67 52 chr1 279557300 279557587 -2636077 + L1 LINE L1 3702 3998 -2148 1065 234 8 27 chr1 279557799 279558055 -2635609 - MIR SINE MIR -7 255 5 291 288 81 30 chr1 279558066 279558302 -2635362 + L1 LINE L1 4177 4424 -1722 197 284 148 25 chr1 279559800 279559881 -2633783 - L2 LINE L2 -3 3269 3179 202 331 56 60 chr1 279560844 279561025 -2632639 + L2 LINE L2 2082 2263 -1051 423 291 73 18 chr1 279561025 279561190 -2632474 + MER5B DNA MER1_type 5 178 0 202 331 56 60 chr1 279561190 279561274 -2632390 + L2 LINE L2 2263 2346 -968 25 31 0 0 chr1 279562003 279562035 -2631629 + AT_rich Low_complexity Low_complexity 1 32 0 1841 100 0 4 chr1 279562093 279562374 -2631290 + AluSg SINE Alu 62 341 0 184 323 16 0 chr1 279562586 279562648 -2631016 + L2 LINE L2 3019 3081 -232 2487 55 0 61 chr1 279563216 279563546 -2630118 - AluY SINE Alu -1 310 1 947 158 153 20 chr1 279563758 279563961 -2629703 + MSTA LTR MaLR 1 230 -198 466 126 92 23 chr1 279563952 279564039 -2629625 + MSTA LTR MaLR 138 230 -198 * 246 221 147 0 chr1 279564030 279564098 -2629566 + MSTA LTR MaLR 138 215 -213 * 456 128 105 23 chr1 279564088 279564174 -2629490 + MSTA LTR MaLR 138 230 -198 373 226 65 0 chr1 279564165 279564258 -2629406 + MSTA LTR MaLR 138 236 -192 * 1231 147 182 12 chr1 279564230 279564488 -2629176 + MSTA LTR MaLR 127 428 0 189 0 0 0 chr1 279564699 279564720 -2628944 + (A)n Simple_repeat Simple_repeat 1 21 0 257 203 68 14 chr1 279564839 279564913 -2628751 + LTR67 LTR ERVL 459 536 -21 516 258 129 4 chr1 279565139 279565364 -2628300 - MER112 DNA MER1_type 0 260 8 184 169 85 34 chr1 279565778 279565837 -2627827 + L3 LINE CR1 1207 1268 -309 22 35 0 0 chr1 279566377 279566406 -2627258 + AT_rich Low_complexity Low_complexity 1 29 0 986 80 0 0 chr1 279566408 279566533 -2627131 + AluY SINE Alu 176 300 -11 254 296 151 58 chr1 279566707 279566879 -2626785 - L2 LINE L2 -107 3165 2978 757 329 107 40 chr1 279567946 279568316 -2625348 - L2 LINE L2 -650 2664 2243 2379 50 6 59 chr1 279568316 279568636 -2625028 + AluY SINE Alu 1 303 -8 757 329 107 40 chr1 279568636 279568819 -2624845 - L2 LINE L2 -1071 2243 2074 369 292 32 94 chr1 279568830 279569014 -2624650 - L2 LINE L2 -1517 1797 1634 1852 155 0 3 chr1 279569014 279569304 -2624360 + AluJb SINE Alu 1 289 -23 369 292 32 94 chr1 279569304 279569396 -2624268 - L2 LINE L2 -1680 1634 1538 579 91 0 0 chr1 279569755 279569832 -2623832 + HY3 scRNA scRNA 20 96 -5 1684 148 7 50 chr1 279570332 279570477 -2623187 + AluJo SINE Alu 1 128 -184 4388 117 24 34 chr1 279570477 279570550 -2623114 + L1PA13 LINE L1 5470 5542 -621 2013 149 3 0 chr1 279570550 279570852 -2622812 - AluSx SINE Alu -9 303 1 4388 117 24 34 chr1 279570852 279571479 -2622185 + L1PA13 LINE L1 5542 6163 0 1684 148 7 50 chr1 279571479 279571636 -2622028 + AluJo SINE Alu 128 290 -22 31 0 0 0 chr1 279571636 279571667 -2621997 + AT_rich Low_complexity Low_complexity 1 31 0 2107 133 0 16 chr1 279571667 279571983 -2621681 + AluSx SINE Alu 2 312 0 2481 178 64 22 chr1 279572124 279572689 -2620975 + L1 LINE L1 3124 3790 -2356 1819 149 0 0 chr1 279572689 279572957 -2620707 + AluJb SINE Alu 31 298 -14 2481 178 64 22 chr1 279572957 279573132 -2620532 + L1 LINE L1 3790 3956 -2190 2034 152 0 0 chr1 279573142 279573439 -2620225 + AluSx SINE Alu 4 300 -12 1421 220 4 0 chr1 279573475 279573739 -2619925 + AluJo SINE Alu 1 265 -47 2544 205 81 78 chr1 279574165 279574990 -2618674 + L1MC4 LINE L1 6830 7657 -385 2093 122 3 19 chr1 279574990 279575302 -2618362 + AluSx SINE Alu 1 307 -5 506 179 0 53 chr1 279575302 279575492 -2618172 + (TA)n Simple_repeat Simple_repeat 1 180 0 1009 204 41 96 chr1 279575518 279575941 -2617723 + L1MC4 LINE L1 7571 7994 -1 1820 154 13 7 chr1 279575972 279576277 -2617387 - AluJo SINE Alu -5 307 1 21 36 0 0 chr1 279577176 279577204 -2616460 + AT_rich Low_complexity Low_complexity 1 28 0 1809 169 0 13 chr1 279577241 279577554 -2616110 + AluJb SINE Alu 1 309 -3 2404 98 3 0 chr1 279577630 279577937 -2615727 - AluSx SINE Alu -4 308 1 2220 114 0 3 chr1 279579018 279579326 -2614338 + AluY SINE Alu 1 307 -4 1825 131 13 48 chr1 279579815 279580128 -2613536 + AluSx SINE Alu 1 302 -10 1595 126 0 13 chr1 279580141 279580379 -2613285 + AluSx SINE Alu 1 235 -77 537 261 52 0 chr1 279581482 279581616 -2612048 + MIR SINE MIR 36 176 -86 2053 154 0 0 chr1 279581727 279582032 -2611632 - AluJo SINE Alu -7 305 1 399 216 10 21 chr1 279582033 279582130 -2611534 + L2 LINE L2 3210 3305 -8 627 138 101 80 chr1 279582291 279582312 -2611352 - FLAM_C SINE Alu -169 143 124 427 191 43 0 chr1 279582312 279582406 -2611258 - L1MB8 LINE L1 0 6178 6081 627 138 101 80 chr1 279582406 279582522 -2611142 - FLAM_C SINE Alu -188 124 3 2126 102 24 17 chr1 279583020 279583313 -2610351 - AluSx SINE Alu -13 299 5 1722 191 149 31 chr1 279583439 279583821 -2609843 + MLT2B1 LTR ERVL 1 427 -93 353 179 0 32 chr1 279583821 279583944 -2609720 + (TA)n Simple_repeat Simple_repeat 1 119 0 1928 164 0 3 chr1 279584099 279584397 -2609267 + AluJb SINE Alu 1 297 -15 1598 170 20 46 chr1 279587724 279588030 -2605634 + AluJo SINE Alu 1 298 -14 506 313 28 6 chr1 279588066 279588248 -2605416 + MIR SINE MIR 76 261 -1 387 282 73 85 chr1 279588285 279588533 -2605131 - MIR SINE MIR -13 249 5 504 256 19 56 chr1 279588755 279588915 -2604749 - MIR SINE MIR -62 200 47 2070 118 3 42 chr1 279589390 279589696 -2603968 + AluSx SINE Alu 1 294 -18 2392 87 3 0 chr1 279589920 279590218 -2603446 - AluSp SINE Alu -14 299 1 2078 119 14 0 chr1 279590632 279590927 -2602737 + AluSx SINE Alu 1 299 -13 204 303 134 34 chr1 279591093 279591212 -2602452 - MER5A DNA MER1_type -9 180 50 2514 55 0 19 chr1 279591289 279591601 -2602063 + AluY SINE Alu 1 306 -5 393 266 115 7 chr1 279591609 279591748 -2601916 - MIR SINE MIR -31 231 78 1469 181 37 50 chr1 279592065 279592363 -2601301 - AluJb SINE Alu -18 294 1 224 286 30 77 chr1 279592617 279592785 -2600879 - L2 LINE L2 -5 3308 3149 1810 181 20 0 chr1 279592815 279593107 -2600557 + AluJb SINE Alu 1 298 -14 247 319 115 38 chr1 279593155 279593312 -2600352 - MIR SINE MIR -20 242 74 2263 118 0 6 chr1 279593480 279593795 -2599869 + AluSq SINE Alu 1 313 0 1155 143 16 0 chr1 279593962 279594151 -2599513 + MER90 LTR ERV1 30 221 -393 30 59 0 0 chr1 279594353 279594404 -2599260 + AT_rich Low_complexity Low_complexity 1 51 0 727 203 0 0 chr1 279594479 279594607 -2599057 - MER5B DNA MER1_type -46 132 5 281 226 137 0 chr1 279595197 279595321 -2598343 + L1MB4 LINE L1 6016 6156 -24 349 136 0 15 chr1 279595323 279595389 -2598275 + L1MB8 LINE L1 6114 6178 0 614 138 0 109 chr1 279595415 279595553 -2598111 + FLAM_A SINE Alu 20 142 0 276 236 0 0 chr1 279596603 279596658 -2597006 - MER5B DNA MER1_type 0 178 124 707 185 22 76 chr1 279597231 279597293 -2596371 + MER5B DNA MER1_type 2 66 -112 2784 33 0 0 chr1 279597293 279597597 -2596067 + AluY SINE Alu 2 305 -6 707 185 22 76 chr1 279597597 279597718 -2595946 + MER5B DNA MER1_type 66 175 -3 1622 147 13 81 chr1 279597884 279598213 -2595451 + AluSx SINE Alu 1 308 0 2269 102 3 0 chr1 279598243 279598558 -2595106 - AluSc SINE Alu 0 309 1 2101 132 10 0 chr1 279598770 279599066 -2594598 + AluJb SINE Alu 1 299 -13 1006 199 24 57 chr1 279599875 279600121 -2593543 + AluJo SINE Alu 75 312 0 1678 216 160 26 chr1 279600123 279600676 -2592988 + L1MC4a LINE L1 5315 5959 -1849 2572 63 7 0 chr1 279600676 279600976 -2592688 + AluY SINE Alu 1 302 -9 1678 216 160 26 chr1 279600976 279601033 -2592631 + L1MC4a LINE L1 5959 6007 -1801 1444 182 0 23 chr1 279601053 279601311 -2592353 - AluJb SINE Alu -52 260 9 327 146 37 24 chr1 279601314 279601396 -2592268 + Charlie1 DNA MER1_type 2462 2544 -217 1084 125 0 0 chr1 279601396 279601540 -2592124 + AluSg/x SINE Alu 149 292 -18 225 0 0 0 chr1 279601626 279601651 -2592013 + (CA)n Simple_repeat Simple_repeat 2 26 0 2108 135 3 10 chr1 279601668 279601980 -2591684 - AluSx SINE Alu -2 310 1 334 177 27 19 chr1 279601995 279602174 -2591490 + Charlie1 DNA MER1_type 2614 2761 0 515 209 122 56 chr1 279602291 279602487 -2591177 - LTR67 LTR ERVL -252 305 97 983 288 113 13 chr1 279602555 279603071 -2590593 - ERVL LTR ERVL -1108 4546 4006 369 307 22 22 chr1 279603284 279603421 -2590243 - ERVL LTR ERVL -1945 3819 3683 895 295 197 7 chr1 279603562 279604121 -2589543 + L2 LINE L2 668 1332 -1982 2022 138 27 3 chr1 279604360 279604656 -2589008 - AluJb SINE Alu -9 303 1 2310 94 30 0 chr1 279605905 279606203 -2587461 + AluSp SINE Alu 1 307 -6 1569 178 9 41 chr1 279606484 279606799 -2586865 - MER7A DNA MER2_type -43 303 1 540 278 96 81 chr1 279607483 279607890 -2585774 + LTR67 LTR ERVL 96 508 -49 198 100 100 0 chr1 279608411 279608451 -2585213 + L2 LINE L2 3267 3310 -3 233 259 88 88 chr1 279609724 279609894 -2583770 - L1MC4 LINE L1 -13 8029 7860 1117 103 0 0 chr1 279609923 279610069 -2583595 - AluSg/x SINE Alu -17 295 150 372 172 0 0 chr1 279610070 279610134 -2583530 - AluJ SINE Alu -106 196 133 595 185 15 44 chr1 279610136 279610271 -2583393 - AluJ SINE Alu -170 132 2 2322 70 17 20 chr1 279610275 279610596 -2583068 - AluSc SINE Alu 0 309 1 590 231 20 0 chr1 279610607 279610754 -2582910 + L1MD3 LINE L1 7846 7995 0 320 280 301 0 chr1 279610766 279610959 -2582705 + L1ME3A LINE L1 5910 6160 -10 670 329 65 17 chr1 279611185 279611599 -2582065 - ERVL LTR ERVL -1324 4440 4007 2291 86 41 0 chr1 279616857 279617147 -2576517 + AluY SINE Alu 1 302 -9 665 331 16 17 chr1 279617224 279617707 -2575957 - L1ME1 LINE L1 -44 6122 5674 4347 104 5 3 chr1 279617708 279618335 -2575329 - LTR10E LTR ERV1 -5 628 1 640 245 20 25 chr1 279618335 279618535 -2575129 - L1ME1 LINE L1 -666 5678 5480 191 319 33 44 chr1 279626039 279626130 -2567534 + MIR SINE MIR 98 187 -75 228 150 17 67 chr1 279626290 279626350 -2567314 + SN5 Other centromeric 322 378 -77 887 155 13 13 chr1 279627363 279627518 -2566146 - MER2 DNA MER2_type 0 345 191 7289 26 3 0 chr1 279627561 279628624 -2565040 + L1PA4 LINE L1 5090 6155 0 1583 127 118 35 chr1 279628909 279629255 -2564409 - THE1C LTR MaLR 0 375 1 180 158 0 0 chr1 279630066 279630104 -2563560 + C-rich Low_complexity Low_complexity 3 40 0 470 210 17 6 chr1 279630426 279630602 -2563062 + GA-rich Low_complexity Low_complexity 2 179 0 43048 137 26 10 chr1 279631235 279632026 -2561638 + HUERS-P3 LTR ERV1 181 958 -6460 1904 132 33 43 chr1 279632026 279632211 -2561453 + AluSx SINE Alu 1 183 -129 2333 84 0 17 chr1 279632211 279632510 -2561154 - AluSg SINE Alu -15 295 2 1904 132 33 43 chr1 279632510 279632628 -2561036 + AluSx SINE Alu 183 301 -11 43048 137 26 10 chr1 279632628 279637746 -2555918 + HUERS-P3 LTR ERV1 958 5994 -1424 2538 59 0 10 chr1 279637746 279638049 -2555615 - AluY SINE Alu -11 300 1 43048 137 26 10 chr1 279638049 279638215 -2555449 + HUERS-P3 LTR ERV1 5994 6156 -1262 2314 114 3 0 chr1 279638215 279638522 -2555142 - AluSp SINE Alu -5 308 1 43048 137 26 10 chr1 279638522 279639132 -2554532 + HUERS-P3 LTR ERV1 6156 6755 -663 2438 87 0 6 chr1 279639132 279639443 -2554221 - AluSc SINE Alu 0 309 1 43048 137 26 10 chr1 279639443 279639889 -2553775 + HUERS-P3 LTR ERV1 6755 7411 -7 2445 157 37 121 chr1 279639893 279640561 -2553103 + LTR9 LTR ERV1 1 612 0 677 176 0 0 chr1 279640562 279640664 -2553000 - FLAM_C SINE Alu -39 104 3 326 178 75 30 chr1 279640979 279641130 -2552534 - LTR16B LTR ERVL 0 464 278 2126 114 7 3 chr1 279641632 279641929 -2551735 - AluSx SINE Alu -14 298 1 1173 205 36 66 chr1 279641941 279642244 -2551420 - AluJo SINE Alu -7 295 2 2400 92 0 0 chr1 279642253 279642558 -2551106 - AluSg SINE Alu -5 305 1 24 77 0 0 chr1 279642788 279642840 -2550824 + AT_rich Low_complexity Low_complexity 1 52 0 1050 104 42 99 chr1 279643530 279643742 -2549922 + L1PB3 LINE L1 5953 6152 -2 1760 156 81 16 chr1 279644125 279644432 -2549232 - MER7A DNA MER2_type 0 346 22 26 64 0 0 chr1 279644461 279644508 -2549156 + AT_rich Low_complexity Low_complexity 1 47 0 1573 159 22 18 chr1 279644615 279644891 -2548773 + AluJo SINE Alu 1 277 -35 352 191 0 0 chr1 279645126 279645189 -2548475 - FLAM_A SINE Alu 0 133 71 810 217 0 40 chr1 279645210 279645385 -2548279 - FRAM SINE Alu -7 169 2 21 71 0 0 chr1 279645448 279645490 -2548174 + AT_rich Low_complexity Low_complexity 1 42 0 233 158 0 0 chr1 279645624 279645662 -2548002 + Alu SINE Alu 1 38 -264 255 167 83 33 chr1 279645792 279645852 -2547812 + AluS SINE Alu 1 63 -240 802 161 0 0 chr1 279645876 279646000 -2547664 + AluJ SINE Alu 1 124 -188 31 0 0 0 chr1 279646022 279646053 -2547611 + AT_rich Low_complexity Low_complexity 1 31 0 1201 147 0 0 chr1 279646054 279646231 -2547433 + AluJ SINE Alu 123 299 -13 2420 73 0 3 chr1 279647030 279647330 -2546334 - AluY SINE Alu -12 299 1 869 202 53 102 chr1 279647337 279647473 -2546191 + LTR40c LTR ERVL 44 185 -280 1635 141 61 0 chr1 279647473 279647750 -2545914 + AluJb SINE Alu 1 294 -18 869 202 53 102 chr1 279647750 279647792 -2545872 + LTR40c LTR ERVL 185 228 -237 1626 169 4 0 chr1 279647792 279648058 -2545606 + AluJb SINE Alu 39 305 -7 869 202 53 102 chr1 279648058 279648262 -2545402 + LTR40c LTR ERVL 228 463 -2 1639 151 38 10 chr1 279648262 279648553 -2545111 + AluJo SINE Alu 1 299 -13 2169 128 3 3 chr1 279648555 279648867 -2544797 + AluSx SINE Alu 1 312 0 2232 124 0 0 chr1 279649207 279649505 -2544159 - AluSg SINE Alu -12 298 1 1769 119 0 0 chr1 279650170 279650405 -2543259 - AluSc SINE Alu -11 298 64 22 0 0 0 chr1 279650702 279650724 -2542940 + AT_rich Low_complexity Low_complexity 1 22 0 727 235 78 0 chr1 279651279 279651432 -2542232 + FRAM SINE Alu 2 166 0 1909 153 0 3 chr1 279651523 279651817 -2541847 + AluJb SINE Alu 1 293 -19 2047 135 3 3 chr1 279652825 279653128 -2540536 + AluSx SINE Alu 1 303 -9 1559 181 54 0 chr1 279653131 279653408 -2540256 + AluJo SINE Alu 1 292 -20 734 194 7 7 chr1 279653659 279653798 -2539866 + FAM SINE Alu 1 139 -46 866 139 8 0 chr1 279653798 279653927 -2539737 + FLAM_C SINE Alu 1 130 -3 837 221 0 0 chr1 279654352 279654501 -2539163 + FAM SINE Alu 1 149 -36 1626 180 21 0 chr1 279654646 279654930 -2538734 + AluJo SINE Alu 1 290 -22 23 54 0 0 chr1 279654934 279654971 -2538693 + AT_rich Low_complexity Low_complexity 1 37 0 854 169 8 0 chr1 279655015 279655145 -2538519 + FLAM_C SINE Alu 1 131 -12 2267 98 3 7 chr1 279655163 279655468 -2538196 + AluSg SINE Alu 1 304 -6 4235 182 90 26 chr1 279655471 279655611 -2538053 + L1MB3 LINE L1 4276 4406 -1777 1764 168 13 7 chr1 279655611 279655921 -2537743 + AluJb SINE Alu 1 312 0 4235 182 90 26 chr1 279655921 279656510 -2537154 + L1MB3 LINE L1 4406 4956 -1227 3557 138 19 4 chr1 279656510 279657023 -2536641 + MER1A DNA MER1_type 5 525 -2 4235 182 90 26 chr1 279657023 279657529 -2536135 + L1MB3 LINE L1 4956 5428 -755 1573 168 55 10 chr1 279657529 279657849 -2535815 + AluJo SINE Alu 1 312 0 4235 182 90 26 chr1 279657849 279658022 -2535642 + L1MB3 LINE L1 5428 5588 -595 2165 127 0 0 chr1 279658022 279658314 -2535350 - AluSx SINE Alu -20 292 1 4235 182 90 26 chr1 279658314 279658645 -2535019 + L1MB3 LINE L1 5588 6131 -52 22 0 0 0 chr1 279659184 279659206 -2534458 + AT_rich Low_complexity Low_complexity 1 22 0 2024 132 7 3 chr1 279659215 279659519 -2534145 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr1 279659844 279659872 -2533792 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1 279659888 279659912 -2533752 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2084 98 11 4 chr1 279659915 279660192 -2533472 - AluSc SINE Alu -30 279 1 1853 163 28 0 chr1 279660381 279660670 -2532994 - AluJb SINE Alu -15 297 1 689 203 15 15 chr1 279661338 279661471 -2532193 - FLAM_A SINE Alu 0 133 1 1793 165 3 3 chr1 279661490 279661793 -2531871 + AluSx SINE Alu 1 303 -9 534 254 233 30 chr1 279661835 279662166 -2531498 - L2 LINE L2 -916 2398 2001 1307 186 18 0 chr1 279662205 279662431 -2531233 - MER30 DNA MER1_type 0 230 1 1441 168 0 9 chr1 279662532 279662764 -2530900 + AluJb SINE Alu 70 299 -13 1191 102 6 6 chr1 279663058 279663225 -2530439 + AluSg SINE Alu 3 169 -141 2187 117 0 3 chr1 279663693 279663992 -2529672 - AluSq SINE Alu -15 298 1 866 155 42 7 chr1 279664658 279664800 -2528864 + Tigger4(Zombi) DNA MER2_type 1 147 -2584 * 4416 127 25 38 chr1 279664795 279664885 -2528779 + Tigger4(Zombi) DNA MER2_type 1979 2069 -662 2257 81 0 10 chr1 279664885 279665181 -2528483 - AluSc SINE Alu -16 293 1 4416 127 25 38 chr1 279665181 279665545 -2528119 + Tigger4(Zombi) DNA MER2_type 2069 2421 -310 2356 97 0 0 chr1 279665545 279665843 -2527821 + AluSq SINE Alu 1 298 -15 4416 127 25 38 chr1 279665843 279666150 -2527514 + Tigger4(Zombi) DNA MER2_type 2421 2731 0 270 320 115 33 chr1 279666275 279666397 -2527267 - MIR3 SINE MIR -70 138 7 2376 77 3 0 chr1 279666905 279667202 -2526462 - AluSx SINE Alu -14 298 1 2177 100 0 0 chr1 279667655 279667956 -2525708 + AluSc SINE Alu 1 301 -8 810 160 30 15 chr1 279670242 279670373 -2523291 + FLAM_C SINE Alu 1 133 0 1747 110 72 4 chr1 279670824 279671087 -2522577 - AluSx SINE Alu -26 286 6 807 164 0 8 chr1 279671129 279671257 -2522407 - FLAM_C SINE Alu -16 127 1 1401 170 99 0 chr1 279671345 279671639 -2522025 - MER33 DNA MER1_type 0 324 2 761 200 97 0 chr1 279671795 279671950 -2521714 - FRAM SINE Alu -6 170 1 2254 91 7 10 chr1 279673376 279673673 -2519991 - AluSx SINE Alu -16 296 1 726 193 25 0 chr1 279673905 279674024 -2519640 - FLAM_A SINE Alu -10 132 11 871 158 6 44 chr1 279674309 279674467 -2519197 + AluJb SINE Alu 136 287 -25 24 77 0 0 chr1 279674481 279674533 -2519131 + AT_rich Low_complexity Low_complexity 1 52 0 862 181 0 0 chr1 279674747 279674874 -2518790 - FLAM_C SINE Alu -6 127 1 723 207 7 43 chr1 279674945 279675085 -2518579 - AluJo SINE Alu -176 136 2 2285 68 0 14 chr1 279676272 279676564 -2517100 - AluY SINE Alu -23 288 1 21 36 0 0 chr1 279676573 279676601 -2517063 + AT_rich Low_complexity Low_complexity 1 28 0 1219 164 39 71 chr1 279676634 279676914 -2516750 - AluJo SINE Alu -5 307 37 23 33 0 0 chr1 279677105 279677135 -2516529 + AT_rich Low_complexity Low_complexity 1 30 0 1766 77 9 0 chr1 279677196 279677455 -2516209 - AluSg SINE Alu 0 321 61 2662 143 38 48 chr1 279677468 279677970 -2515694 + L1MB8 LINE L1 5671 6167 -11 2349 79 0 29 chr1 279678169 279678485 -2515179 + AluSx SINE Alu 3 309 -3 2011 139 7 0 chr1 279678723 279679017 -2514647 - AluSx SINE Alu -16 296 1 1359 155 5 5 chr1 279679960 279680179 -2513485 - AluJb SINE Alu -93 219 1 517 227 92 3 chr1 279680487 279680628 -2513036 - MIR SINE MIR -67 141 17 433 320 160 0 chr1 279680629 279680779 -2512885 - MER5A DNA MER1_type -7 182 9 210 320 82 31 chr1 279681757 279681854 -2511810 + MIR SINE MIR 24 125 -137 * 297 306 139 21 chr1 279681826 279682043 -2511621 - MIR SINE MIR -13 249 10 355 68 0 68 chr1 279682858 279682903 -2510761 - MLT2A1 LTR ERVL 0 444 402 381 43 0 0 chr1 279682903 279682950 -2510714 + (TG)n Simple_repeat Simple_repeat 2 48 0 355 68 0 68 chr1 279682950 279682963 -2510701 - MLT2A1 LTR ERVL -42 402 390 24 0 0 0 chr1 279682964 279682988 -2510676 + AT_rich Low_complexity Low_complexity 1 24 0 447 78 78 12 chr1 279683132 279683298 -2510366 + (TA)n Simple_repeat Simple_repeat 1 177 0 183 156 0 0 chr1 279683329 279683361 -2510303 + (TATATG)n Simple_repeat Simple_repeat 6 37 0 3146 82 5 2 chr1 279683363 279683766 -2509898 - MLT2A1 LTR ERVL -40 404 1 1722 111 0 0 chr1 279684601 279684827 -2508837 + AluSx SINE Alu 1 226 -86 655 341 44 20 chr1 279684985 279685281 -2508383 - L3 LINE CR1 -1 1576 1274 2423 98 0 3 chr1 279685380 279685685 -2507979 - AluSx SINE Alu -8 304 1 8031 36 7 0 chr1 279685711 279686680 -2506984 - L1P LINE L1 -806 5340 4365 1804 83 4 4 chr1 279886680 279886921 -2306743 + AluY SINE Alu 67 307 -4 330 317 83 17 chr1 279887015 279887135 -2306529 + L2 LINE L2 3144 3271 -1 21 0 0 0 chr1 279887575 279887596 -2306068 + AT_rich Low_complexity Low_complexity 1 21 0 1392 161 88 49 chr1 279887872 279888016 -2305648 + AluJo SINE Alu 3 140 -172 2321 91 10 0 chr1 279888016 279888312 -2305352 + AluSg SINE Alu 1 299 -11 1392 161 88 49 chr1 279888312 279888452 -2305212 + AluJo SINE Alu 140 298 -14 24 77 0 0 chr1 279890405 279890457 -2303207 + AT_rich Low_complexity Low_complexity 1 52 0 643 311 71 9 chr1 279890587 279890812 -2302852 - MIR SINE MIR -3 259 21 793 179 0 8 chr1 279890994 279891128 -2302536 + FLAM_C SINE Alu 1 133 0 2863 184 59 2 chr1 279891192 279891228 -2302436 - MLT2B1 LTR ERVL -4 516 484 852 48 14 27 chr1 279891228 279891375 -2302289 + (TAGA)n Simple_repeat Simple_repeat 2 146 0 2863 184 59 2 chr1 279891375 279891826 -2301838 - MLT2B1 LTR ERVL -36 484 1 184 232 0 134 chr1 279891956 279892038 -2301626 + L2 LINE L2 3241 3311 -2 1453 238 108 34 chr1 279893418 279893855 -2299809 - MLT1E LTR MaLR 0 593 125 327 245 9 94 chr1 279893878 279893984 -2299680 + L1MDa LINE L1 618 714 -5826 707 212 62 17 chr1 279893987 279894155 -2299509 + MLT1A2 LTR MaLR 1 179 -211 1233 179 104 43 chr1 279894155 279894435 -2299229 + AluJo SINE Alu 1 297 -15 970 146 154 27 chr1 279894464 279894724 -2298940 - LTR18B LTR ERVL 0 614 322 * 1229 155 10 5 chr1 279894720 279894914 -2298750 - LTR18B LTR ERVL -419 195 1 222 37 0 0 chr1 279894918 279894945 -2298719 + (TC)n Simple_repeat Simple_repeat 2 28 0 3397 181 14 39 chr1 279894977 279895690 -2297974 + L1MD2 LINE L1 5254 5948 -411 1141 213 175 20 chr1 279895794 279896137 -2297527 + L1MD2 LINE L1 5962 6357 -2 186 143 0 0 chr1 279896137 279896172 -2297492 + (TATG)n Simple_repeat Simple_repeat 2 36 0 257 322 87 17 chr1 279896286 279896401 -2297263 + MIR SINE MIR 75 197 -65 1140 164 171 103 chr1 279896767 279897048 -2296616 + AluJo SINE Alu 2 301 -1 628 305 5 0 chr1 279897093 279897290 -2296374 + L1MC4 LINE L1 6805 7002 -1040 34 24 0 0 chr1 279898108 279898149 -2295515 + AT_rich Low_complexity Low_complexity 1 41 0 519 295 159 51 chr1 279898236 279898518 -2295146 + HAL1b LINE L1 47 297 -1051 2116 92 67 0 chr1 279898518 279898801 -2294863 + AluSq SINE Alu 7 308 -5 519 295 159 51 chr1 279898801 279899117 -2294547 + HAL1b LINE L1 297 613 -735 338 340 50 44 chr1 279899485 279899564 -2294100 + L1M4 LINE L1 2451 2528 -3618 7968 33 2 0 chr1 279899564 279900492 -2293172 + L1PA4 LINE L1 5224 6153 -2 338 340 50 44 chr1 279900492 279900730 -2292934 + L1M4 LINE L1 2528 2770 -3376 2047 111 25 0 chr1 279900838 279901117 -2292547 + AluSx SINE Alu 1 286 -26 200 29 0 59 chr1 279901121 279901155 -2292509 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 5313 197 73 14 chr1 279901158 279902357 -2291307 - Charlie1a DNA MER1_type -185 1270 1 1912 227 19 24 chr1 279902360 279902894 -2290770 + L1ME1 LINE L1 2162 2692 -3454 582 107 0 0 chr1 279902895 279902970 -2290694 + AluS SINE Alu 2 76 -236 632 90 11 22 chr1 279902970 279903059 -2290605 - THE1B LTR MaLR -276 88 1 4290 234 64 39 chr1 279903059 279904504 -2289160 + L1ME1 LINE L1 3062 4542 -1604 968 209 0 0 chr1 279904561 279904719 -2288945 - FRAM SINE Alu -7 159 2 1347 152 0 0 chr1 279904737 279904928 -2288736 + AluJb SINE Alu 81 271 -41 2087 219 32 20 chr1 279904943 279905445 -2288219 + L1ME1 LINE L1 5611 6118 -48 1051 151 6 0 chr1 279905445 279905611 -2288053 + FRAM SINE Alu 1 161 -15 845 164 0 14 chr1 279905701 279905841 -2287823 + FLAM_C SINE Alu 2 139 -4 329 61 0 20 chr1 279906028 279906077 -2287587 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 1675 153 7 22 chr1 279906083 279906358 -2287306 - AluSx SINE Alu -41 271 1 225 0 0 0 chr1 279906947 279906972 -2286692 + (A)n Simple_repeat Simple_repeat 1 25 0 2540 45 3 13 chr1 279907608 279907922 -2285742 - AluY SINE Alu 0 311 1 365 293 63 68 chr1 279908066 279908271 -2285393 - MIR SINE MIR -39 223 20 343 207 0 61 chr1 279908617 279908699 -2284965 - L2 LINE L2 -73 3240 3164 303 290 85 28 chr1 279908740 279908916 -2284748 - L2 LINE L2 -281 3032 2847 * 649 296 101 13 chr1 279908884 279909192 -2284472 - L2 LINE L2 -723 2591 2257 676 232 65 61 chr1 279909243 279909506 -2284158 - Charlie4 DNA MER1_type -1680 281 18 2594 68 0 0 chr1 279909545 279909855 -2283809 + L1PA8 LINE L1 5863 6172 0 243 140 0 0 chr1 279909899 279909949 -2283715 + (A)n Simple_repeat Simple_repeat 1 50 0 1674 152 0 50 chr1 279910081 279910378 -2283286 + AluJo SINE Alu 1 282 -30 584 166 13 33 chr1 279910381 279910532 -2283132 + GA-rich Low_complexity Low_complexity 1 148 0 230 253 180 33 chr1 279910563 279910713 -2282951 - L2 LINE L2 -1890 1424 1253 605 282 32 44 chr1 279910720 279910972 -2282692 + MIR SINE MIR 14 262 0 190 325 121 6 chr1 279910986 279911143 -2282521 - L2 LINE L2 -768 2546 2372 2362 89 7 0 chr1 279911375 279911677 -2281987 - AluSp SINE Alu -9 304 1 2070 216 53 13 chr1 279911797 279912246 -2281418 + MLT1C LTR MaLR 1 467 0 721 214 0 8 chr1 279912284 279912415 -2281249 - AluJb SINE Alu -182 130 1 2336 69 20 3 chr1 279912425 279912728 -2280936 - AluY SINE Alu -3 308 1 858 31 0 0 chr1 279913154 279913252 -2280412 - L1PA4 LINE L1 -5 6150 6053 554 306 97 11 chr1 279913963 279914231 -2279433 - L1ME LINE L1 -327 5794 5504 232 170 482 9 chr1 279914865 279914977 -2278687 + MIR SINE MIR 8 172 -90 206 225 0 0 chr1 279915034 279915074 -2278590 + GA-rich Low_complexity Low_complexity 3 42 0 197 245 38 85 chr1 279916629 279916735 -2276929 + MER5A DNA MER1_type 61 161 -28 3396 136 23 43 chr1 279917024 279917565 -2276099 - MER6A DNA MER2_type -273 592 63 2039 118 7 3 chr1 279917565 279917853 -2275811 - AluSx SINE Alu -23 289 1 3396 136 23 43 chr1 279917853 279917913 -2275751 - MER6A DNA MER2_type -802 63 3 24 32 0 0 chr1 279918085 279918116 -2275548 + AT_rich Low_complexity Low_complexity 1 31 0 220 352 114 42 chr1 279918588 279918824 -2274840 + L2 LINE L2 3020 3272 0 1311 263 82 44 chr1 279919161 279919659 -2274005 + MLT1L LTR MaLR 99 615 0 301 225 358 13 chr1 279919824 279919975 -2273689 - MIR SINE MIR -12 250 48 3692 148 49 7 chr1 279920906 279921513 -2272151 - L1MB3 LINE L1 -7 6176 5544 809 146 24 16 chr1 279921883 279922006 -2271658 + AluJb SINE Alu 166 289 -23 1239 187 23 0 chr1 279922577 279922791 -2270873 - MER20 DNA MER1_type 0 219 1 291 54 0 0 chr1 279923451 279923488 -2270176 + (TG)n Simple_repeat Simple_repeat 2 38 0 1161 298 59 16 chr1 279924328 279924700 -2268964 - MLT1K LTR MaLR -162 426 39 393 300 8 8 chr1 279924796 279924916 -2268748 + MARNA DNA Mariner 95 214 -372 2241 99 0 0 chr1 279926013 279926319 -2267345 - AluSx SINE Alu 0 306 1 1560 136 42 28 chr1 279926691 279926951 -2266713 + L1MA7 LINE L1 5997 6263 -28 2128 101 3 7 chr1 279926951 279927239 -2266425 - AluSc SINE Alu -22 287 1 1560 136 42 28 chr1 279927239 279927264 -2266400 + L1MA7 LINE L1 6263 6286 -5 459 276 62 29 chr1 279927840 279928050 -2265614 + L2 LINE L2 2291 2507 -807 1198 240 79 3 chr1 279928163 279928668 -2264996 - MLT2F LTR ERVL -53 610 1 432 327 136 50 chr1 279928668 279929375 -2264289 + L2 LINE L2 2488 3271 -1 2986 83 6 0 chr1 279930235 279930597 -2263067 - THE1B LTR MaLR 0 364 1 572 303 130 47 chr1 279930837 279931368 -2262296 - L2 LINE L2 -654 2660 2086 672 244 33 6 chr1 279931919 279932099 -2261565 - MER112 DNA MER1_type -9 251 67 317 232 0 0 chr1 279932128 279932197 -2261467 - MER112 DNA MER1_type -175 85 17 288 298 21 32 chr1 279932269 279932363 -2261301 + L2 LINE L2 3178 3270 -2 2199 139 48 11 chr1 279933553 279933906 -2259758 - MER47A DNA MER2_type 0 366 1 398 305 61 41 chr1 279934720 279934917 -2258747 - MIR SINE MIR -50 212 12 611 26 13 0 chr1 279935261 279935304 -2258360 + (TCTA)n Simple_repeat Simple_repeat 1 121 0 611 26 13 0 chr1 279935304 279935381 -2258283 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 440 284 22 68 chr1 279936956 279937117 -2256547 + MIR SINE MIR 1 151 -111 2539 47 7 0 chr1 279937117 279937417 -2256247 + AluY SINE Alu 1 302 -9 440 284 22 68 chr1 279937417 279937477 -2256187 + MIR SINE MIR 151 212 -50 927 62 86 0 chr1 279937910 279938038 -2255626 + MER85 DNA T2_type 1 139 0 510 314 24 56 chr1 279938121 279938373 -2255291 + LTR67 LTR ERVL 79 322 -235 2311 96 3 0 chr1 279938508 279938809 -2254855 - AluSg SINE Alu -8 302 1 296 241 111 19 chr1 279938831 279938939 -2254725 + LTR67 LTR ERVL 435 552 -5 279 243 229 14 chr1 279938978 279939122 -2254542 + MIR SINE MIR 88 262 0 272 343 47 12 chr1 279939776 279939945 -2253719 + MLT1L LTR MaLR 405 579 -36 22 35 0 0 chr1 279940061 279940090 -2253574 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr1 279941606 279941639 -2252025 + AT_rich Low_complexity Low_complexity 1 33 0 2425 95 3 0 chr1 279941971 279942275 -2251389 + AluSq SINE Alu 1 305 -8 2092 125 21 0 chr1 279942292 279942580 -2251084 - AluSx SINE Alu -18 294 1 294 313 40 0 chr1 279943444 279943543 -2250121 - MIR SINE MIR -70 192 90 251 169 28 56 chr1 279943675 279943746 -2249918 + MIR SINE MIR 111 179 -83 1935 128 0 7 chr1 279943879 279944160 -2249504 - AluSx SINE Alu -33 279 1 1480 112 56 0 chr1 279945433 279945648 -2248016 + AluJo SINE Alu 32 258 -54 2133 102 11 11 chr1 279945666 279945980 -2247684 + AluSq SINE Alu 1 314 0 428 209 25 134 chr1 279946964 279947105 -2246559 + Charlie1a DNA MER1_type 1 128 -1327 261 222 0 0 chr1 279947109 279947172 -2246492 + CT-rich Low_complexity Low_complexity 3 65 0 920 161 0 8 chr1 279947337 279947589 -2246075 + C-rich Low_complexity Low_complexity 1 249 0 1920 168 0 13 chr1 279947589 279947893 -2245771 - AluJo SINE Alu -12 300 1 5961 202 33 15 chr1 279947895 279949214 -2244450 + Charlie1a DNA MER1_type 108 1450 -5 300 324 31 6 chr1 279949586 279949741 -2243923 + MIR SINE MIR 30 192 -65 1953 163 42 3 chr1 279949853 279950184 -2243480 + MER2 DNA MER2_type 1 344 0 216 208 0 19 chr1 279950509 279950562 -2243102 - L2 LINE L2 0 3313 3262 321 254 45 96 chr1 279951036 279951256 -2242408 - HAL1 LINE L1 -758 1749 1541 1696 142 18 25 chr1 279951870 279952145 -2241519 - AluJo SINE Alu -31 281 9 421 232 24 40 chr1 279952350 279952475 -2241189 + MER5B DNA MER1_type 55 177 -1 501 218 42 21 chr1 279953554 279953696 -2239968 - MIR3 SINE MIR -10 198 54 275 192 14 0 chr1 279953696 279953769 -2239895 + GA-rich Low_complexity Low_complexity 4 77 0 489 237 97 20 chr1 279953791 279954018 -2239646 - MLT1L LTR MaLR -5 610 335 252 267 59 20 chr1 279954161 279954262 -2239402 - MLT1L LTR MaLR -391 224 120 1206 94 0 0 chr1 279954957 279955145 -2238519 - FRAM SINE Alu 0 185 1 301 338 23 93 chr1 279958271 279958524 -2235140 - L2 LINE L2 -9 3263 2994 207 0 0 0 chr1 279958524 279958547 -2235117 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2295 86 0 0 chr1 279958549 279958828 -2234836 - AluSg SINE Alu -31 279 1 301 338 23 93 chr1 279958828 279958967 -2234697 - L2 LINE L2 -279 2993 2896 1790 143 0 36 chr1 279959206 279959513 -2234151 + AluJo SINE Alu 13 309 0 382 229 36 0 chr1 279959995 279960078 -2233586 - MER69 DNA AcHobo -1128 98 13 214 327 168 0 chr1 279960833 279960946 -2232718 - L2 LINE L2 -5 3267 3136 2065 139 3 0 chr1 279961238 279961547 -2232117 - AluSx SINE Alu -2 310 1 23 54 0 0 chr1 279961660 279961697 -2231967 + AT_rich Low_complexity Low_complexity 1 37 0 1187 209 146 37 chr1 279962722 279963099 -2230565 + MLT1C LTR MaLR 1 418 -49 2323 105 3 0 chr1 279963124 279963430 -2230234 - AluSg SINE Alu -3 307 1 317 188 0 29 chr1 279963430 279963499 -2230165 + MLT1C LTR MaLR 401 467 0 24 0 0 0 chr1 279964151 279964175 -2229489 + AT_rich Low_complexity Low_complexity 1 24 0 1790 157 28 0 chr1 279964613 279964899 -2228765 - AluJb SINE Alu -18 294 1 1306 104 0 0 chr1 279965067 279965240 -2228424 + AluSq SINE Alu 129 301 -12 711 272 109 52 chr1 279967056 279967560 -2226104 + L1MC4 LINE L1 7509 8041 -1 228 135 0 0 chr1 279967783 279967820 -2225844 + (TCC)n Simple_repeat Simple_repeat 3 39 0 357 227 92 61 chr1 279968621 279968784 -2224880 - MER5B DNA MER1_type -1 177 10 1030 87 0 0 chr1 279969385 279969512 -2224152 - FRAM SINE Alu -23 153 27 611 213 0 22 chr1 279969630 279969766 -2223898 - MIR SINE MIR -21 241 109 226 312 13 13 chr1 279969771 279969848 -2223816 + MIR SINE MIR 53 129 -133 2383 103 3 0 chr1 279971365 279971677 -2221987 + AluSq SINE Alu 1 313 0 2184 101 24 0 chr1 279971908 279972204 -2221460 - AluSx SINE Alu -6 306 4 182 236 18 18 chr1 279974391 279974446 -2219218 + L2 LINE L2 3258 3312 -1 21 0 0 0 chr1 279975866 279975887 -2217777 + AT_rich Low_complexity Low_complexity 1 21 0 1053 270 114 39 chr1 279976430 279977116 -2216548 - L1MC5 LINE L1 -49 7912 7260 2403 109 0 0 chr1 279977757 279978069 -2215595 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 279978270 279978292 -2215372 + AT_rich Low_complexity Low_complexity 1 22 0 1558 162 50 30 chr1 279978440 279978737 -2214927 - AluJo SINE Alu -9 303 1 2155 133 0 0 chr1 279978752 279979052 -2214612 - AluSx SINE Alu -12 300 1 192 331 37 37 chr1 279979105 279979241 -2214423 - MIR SINE MIR -54 208 73 2185 123 0 3 chr1 279980270 279980578 -2213086 - AluSq SINE Alu -6 307 1 356 290 90 72 chr1 279983618 279983780 -2209884 + L2 LINE L2 2782 2940 -373 2241 112 7 0 chr1 279983780 279984076 -2209588 - AluSx SINE Alu -14 298 1 356 290 90 72 chr1 279984076 279984406 -2209258 + L2 LINE L2 2940 3270 -43 2362 76 0 0 chr1 279985017 279985342 -2208322 - AluY SINE Alu 0 345 21 1284 6 17 28 chr1 279985350 279985530 -2208134 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2224 115 0 3 chr1 279985546 279985841 -2207823 - AluSq SINE Alu -19 294 1 688 258 11 11 chr1 279986054 279986244 -2207420 - MIR SINE MIR -47 215 26 449 343 59 10 chr1 279986643 279986881 -2206783 + MIR SINE MIR 3 250 -12 1797 169 0 26 chr1 279988278 279988585 -2205079 + AluJo SINE Alu 1 299 -13 276 172 81 50 chr1 279989000 279989099 -2204565 - L1MB2 LINE L1 0 6171 6070 235 275 193 0 chr1 279989820 279989929 -2203735 + MIR3 SINE MIR 11 140 -68 278 321 18 18 chr1 279991043 279991155 -2202509 + MIR3 SINE MIR 76 187 -21 222 339 39 0 chr1 279991334 279991461 -2202203 - L3b LINE CR1 -182 1401 1270 27 0 0 0 chr1 279991653 279991680 -2201984 + AT_rich Low_complexity Low_complexity 1 27 0 254 280 60 10 chr1 279991858 279991958 -2201706 - MIR SINE MIR -14 248 144 1749 150 50 4 chr1 279991973 279992253 -2201411 - AluJb SINE Alu -19 293 1 246 67 0 0 chr1 279992297 279992327 -2201337 + L1PA16 LINE L1 6029 6058 -108 218 280 30 10 chr1 279994350 279994450 -2199214 - L2 LINE L2 -52 3261 3160 687 162 77 0 chr1 279994547 279994664 -2199000 + FLAM_A SINE Alu 1 126 -7 238 183 38 38 chr1 279994743 279994874 -2198790 + (TA)n Simple_repeat Simple_repeat 2 132 0 328 154 0 66 chr1 279994888 279994979 -2198685 - MER20B DNA MER1_type -151 632 548 2361 157 50 22 chr1 279995120 279995521 -2198143 + MSTC LTR MaLR 16 427 -1 1048 179 0 11 chr1 279995704 279995883 -2197781 - AluJo SINE Alu -13 299 123 1772 178 15 18 chr1 279995920 279996074 -2197590 - L1MB7 LINE L1 -42 6142 5989 459 295 60 75 chr1 279996074 279997114 -2196550 - L1MC1 LINE L1 -350 5983 901 223 263 0 0 chr1 279998145 279998202 -2195462 - L2 LINE L2 0 3272 3216 2417 87 0 0 chr1 279998426 279998726 -2194938 - AluSg SINE Alu -6 304 5 223 291 19 29 chr1 279998869 279998972 -2194692 + MER5A DNA MER1_type 32 133 -56 488 301 83 50 chr1 279999546 279999968 -2193696 - L2 LINE L2 -518 2796 2361 733 187 13 19 chr1 280000129 280000284 -2193380 - L1PB4 LINE L1 -8 6148 5995 1690 152 57 0 chr1 280000718 280001001 -2192663 - AluJb SINE Alu -13 299 1 376 266 147 27 chr1 280001686 280001870 -2191794 - MIR SINE MIR -32 230 25 235 250 17 0 chr1 280001981 280002041 -2191623 + MER5A DNA MER1_type 34 94 -95 1611 176 65 3 chr1 280002043 280002350 -2191314 - MLT1A1 LTR MaLR 0 365 40 386 121 15 0 chr1 280002368 280002434 -2191230 + MER5A DNA MER1_type 93 159 -30 182 284 116 11 chr1 280003110 280003205 -2190459 + MER5A DNA MER1_type 16 120 -69 965 151 6 6 chr1 280003257 280003416 -2190248 - FRAM SINE Alu -22 154 1 2375 91 13 0 chr1 280003504 280003812 -2189852 - AluSq SINE Alu -1 312 1 840 249 103 60 chr1 280004000 280004466 -2189198 - MLT1J LTR MaLR -3 508 23 2240 102 47 39 chr1 280004704 280004894 -2188770 - THE1B LTR MaLR 0 364 168 2280 109 0 3 chr1 280004894 280005196 -2188468 - AluSc SINE Alu -8 301 1 2240 102 47 39 chr1 280005196 280005366 -2188298 - THE1B LTR MaLR -196 168 1 1400 76 82 0 chr1 280005370 280005554 -2188110 - THE1B LTR MaLR -164 200 2 1106 160 9 50 chr1 280006157 280006376 -2187288 - MER20 DNA MER1_type -9 210 1 2289 47 0 0 chr1 280006697 280006955 -2186709 + AluY SINE Alu 1 258 -53 438 302 107 19 chr1 280007060 280007219 -2186445 - MER5A DNA MER1_type -10 179 7 378 195 97 9 chr1 280007281 280007394 -2186270 - L1M4 LINE L1 -1408 4738 4616 388 258 0 32 chr1 280007481 280007605 -2186059 + L2 LINE L2 3182 3301 -12 2174 113 10 0 chr1 280007614 280007915 -2185749 - AluY SINE Alu 0 311 8 23 54 0 0 chr1 280007917 280007954 -2185710 + AT_rich Low_complexity Low_complexity 1 37 0 485 297 102 62 chr1 280008415 280008710 -2184954 - MLT1K LTR MaLR -8 580 257 1839 167 3 3 chr1 280008710 280009010 -2184654 + AluJo SINE Alu 1 300 -12 485 297 102 62 chr1 280009010 280009195 -2184469 - MLT1K LTR MaLR -331 257 81 2167 220 39 93 chr1 280009451 280010125 -2183539 + MER21B LTR ERV1 1 637 -226 339 162 44 0 chr1 280010147 280010215 -2183449 - L1MA1 LINE L1 -165 6137 6067 451 296 59 0 chr1 280010215 280010367 -2183297 + MER21B LTR ERV1 645 805 -58 1155 117 41 25 chr1 280010583 280010780 -2182884 + L1MA2 LINE L1 6028 6227 -77 21 36 0 0 chr1 280011479 280011507 -2182157 + AT_rich Low_complexity Low_complexity 1 28 0 2364 89 0 7 chr1 280011692 280011995 -2181669 - AluSq SINE Alu -12 301 1 344 264 50 107 chr1 280012192 280012472 -2181192 - Charlie8 DNA MER1_type -1000 1417 67 2242 103 3 3 chr1 280012581 280012882 -2180782 - AluSc SINE Alu -8 301 1 500 212 0 6 chr1 280013299 280013478 -2180186 + (CA)n Simple_repeat Simple_repeat 1 178 0 578 210 0 6 chr1 280013522 280013703 -2179961 + (CA)n Simple_repeat Simple_repeat 1 180 0 2441 73 0 0 chr1 280014111 280014400 -2179264 - AluSg1 SINE Alu -20 289 1 1024 105 44 22 chr1 280014905 280015086 -2178578 + L1MC3 LINE L1 6913 7097 -688 227 267 40 10 chr1 280015087 280015188 -2178476 + MLT1F1 LTR MaLR 36 139 -428 3056 137 58 15 chr1 280015189 280015736 -2177928 + L1MC3 LINE L1 7202 7772 -13 2035 139 0 30 chr1 280015740 280016041 -2177623 - AluJo SINE Alu -18 294 3 459 304 96 16 chr1 280016100 280016413 -2177251 - MLT1L LTR MaLR -115 500 163 206 105 26 0 chr1 280017278 280017316 -2176348 + GA-rich Low_complexity Low_complexity 2 40 0 272 255 10 0 chr1 280017787 280017889 -2175775 + (TG)n Simple_repeat Simple_repeat 1 103 0 2478 289 43 50 chr1 280018363 280019388 -2174276 + HERV16 LTR ERVL 220 1237 -3759 215 222 0 0 chr1 280019438 280019483 -2174181 + (TG)n Simple_repeat Simple_repeat 2 46 0 4581 320 60 40 chr1 280019612 280020489 -2173175 + HERV16 LTR ERVL 1378 2236 -3528 1880 164 3 22 chr1 280020489 280020800 -2172864 + AluJb SINE Alu 1 305 -7 4581 320 60 40 chr1 280020800 280022478 -2171186 + HERV16 LTR ERVL 2236 3983 -1781 1485 334 55 58 chr1 280022870 280023658 -2170006 + HERV16 LTR ERVL 4148 4936 -828 1965 128 25 11 chr1 280023658 280023939 -2169725 + AluSx SINE Alu 1 285 -27 315 0 0 0 chr1 280023939 280023974 -2169690 + (CA)n Simple_repeat Simple_repeat 2 36 0 1124 131 0 12 chr1 280023984 280024152 -2169512 + FRAM SINE Alu 1 166 0 1485 334 55 58 chr1 280024152 280024523 -2169141 + HERV16 LTR ERVL 4944 5316 -448 723 299 93 20 chr1 280024730 280025128 -2168536 + LTR16A LTR ERVL 24 450 0 189 0 0 0 chr1 280025832 280025853 -2167811 + (T)n Simple_repeat Simple_repeat 1 21 0 1577 159 37 15 chr1 280027863 280028197 -2165467 - AluJo SINE Alu 0 349 10 244 330 59 0 chr1 280028546 280028664 -2165000 - L2 LINE L2 -7 3265 3141 1902 121 4 0 chr1 280029326 280029591 -2164073 - AluSx SINE Alu -13 299 34 282 398 42 4 chr1 280030181 280030417 -2163247 - L2 LINE L2 -339 2975 2731 454 160 64 0 chr1 280030523 280030617 -2163047 - MIR SINE MIR -116 146 47 1244 202 29 4 chr1 280030690 280030933 -2162731 + L1MB7 LINE L1 5398 5646 -538 1236 205 52 15 chr1 280030933 280031172 -2162492 + MLT1A1 LTR MaLR 1 249 -116 855 151 63 13 chr1 280031172 280031331 -2162333 + THE1C LTR MaLR 1 167 -208 586 106 0 12 chr1 280031356 280031441 -2162223 + THE1C LTR MaLR 345 428 0 841 127 0 0 chr1 280031442 280031560 -2162104 + MLT1A1 LTR MaLR 248 365 0 2568 192 17 15 chr1 280031560 280032102 -2161562 + L1MB7 LINE L1 5642 6184 0 1438 174 30 36 chr1 280032290 280032595 -2161069 - AluJo SINE Alu -9 303 1 618 269 63 40 chr1 280032595 280032818 -2160846 + MIR SINE MIR 35 262 0 3994 169 15 25 chr1 280032986 280033667 -2159997 + L1MB2 LINE L1 5448 6123 -48 2287 83 7 3 chr1 280033667 280033956 -2159708 + AluY SINE Alu 1 290 -21 3994 169 15 25 chr1 280033956 280033995 -2159669 + L1MB2 LINE L1 6123 6161 -10 2270 95 13 0 chr1 280034371 280034675 -2158989 + AluSp SINE Alu 1 308 -5 456 124 0 214 chr1 280034754 280034899 -2158765 - MER53 DNA DNA -1 188 75 1160 113 30 25 chr1 280034910 280035113 -2158551 + MSTB1 LTR MaLR 1 204 -228 1202 96 40 2 chr1 280035113 280035362 -2158302 + AluSx SINE Alu 1 303 -9 1088 158 61 18 chr1 280035362 280035590 -2158074 + MSTB1 LTR MaLR 195 432 0 252 150 25 0 chr1 280035590 280035629 -2158035 - MER53 DNA DNA -149 40 1 236 51 0 26 chr1 280036923 280036962 -2156702 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 433 149 0 15 chr1 280036962 280037029 -2156635 - FLAM SINE Alu -22 121 56 * 782 187 0 15 chr1 280037026 280037160 -2156504 - FRAM SINE Alu -44 132 1 197 261 0 58 chr1 280037677 280037746 -2155918 - L2 LINE L2 -995 2319 2255 512 204 139 33 chr1 280038261 280038525 -2155139 + MER33 DNA MER1_type 5 355 -8 180 0 0 0 chr1 280039485 280039505 -2154159 + (TC)n Simple_repeat Simple_repeat 1 20 0 1323 204 22 50 chr1 280039652 280039970 -2153694 - MER46C DNA MER2_type 0 338 30 673 220 167 0 chr1 280040320 280040470 -2153194 - FAM SINE Alu 0 175 1 181 280 80 27 chr1 280040471 280040546 -2153118 - L2 LINE L2 0 3272 3194 * 673 258 31 6 chr1 280040523 280040686 -2152978 - MIR SINE MIR -93 169 3 2249 116 3 0 chr1 280040734 280041044 -2152620 + AluSx SINE Alu 1 311 -1 182 321 62 12 chr1 280042563 280042644 -2151020 + L2 LINE L2 3168 3252 -20 2330 94 0 7 chr1 280042700 280043007 -2150657 - AluSx SINE Alu -7 305 1 184 222 19 37 chr1 280043074 280043128 -2150536 - L2 LINE L2 -1873 1441 1389 216 350 40 10 chr1 280044702 280044802 -2148862 - MIR3 SINE MIR -40 168 66 410 302 5 78 chr1 280044911 280045103 -2148561 - MER5B DNA MER1_type 0 178 1 191 133 133 0 chr1 280045534 280045579 -2148085 - L2 LINE L2 -9 3263 3213 209 171 0 0 chr1 280046236 280046271 -2147393 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1591 144 0 34 chr1 280046461 280046725 -2146939 - AluJo SINE Alu -20 292 38 2438 47 0 0 chr1 280046793 280047072 -2146592 - AluY SINE Alu -5 306 28 679 264 75 54 chr1 280047439 280047772 -2145892 + MLT1J2 LTR MaLR 44 383 -67 2749 150 40 21 chr1 280047773 280048254 -2145410 - L1MA7 LINE L1 -265 6026 5537 1267 268 51 42 chr1 280048255 280048688 -2144976 - MLT1J LTR MaLR -74 437 1 7147 139 48 18 chr1 280048968 280050164 -2143500 + Tigger3b DNA MER2_type 1 1231 0 243 261 126 82 chr1 280050775 280050982 -2142682 - MIR SINE MIR -41 221 6 22 0 0 0 chr1 280052334 280052356 -2141308 + AT_rich Low_complexity Low_complexity 1 22 0 223 233 0 0 chr1 280053552 280053595 -2140069 + CT-rich Low_complexity Low_complexity 1 43 0 29 60 0 0 chr1 280054081 280054131 -2139533 + AT_rich Low_complexity Low_complexity 1 50 0 243 328 23 53 chr1 280055504 280055635 -2138029 + MIR SINE MIR 61 187 -75 308 236 56 22 chr1 280055912 280056001 -2137663 + CT-rich Low_complexity Low_complexity 3 94 0 483 286 40 0 chr1 280056006 280056132 -2137532 - L2 LINE L2 -18 3295 3165 270 0 0 0 chr1 280056540 280056570 -2137094 + (CA)n Simple_repeat Simple_repeat 2 31 0 206 62 31 0 chr1 280061046 280061078 -2132586 + (CA)n Simple_repeat Simple_repeat 2 34 0 315 248 122 72 chr1 280062709 280062971 -2130693 + L1M2 LINE L1 959 1233 -5616 219 83 0 0 chr1 280063271 280063292 -2130372 + (CGG)n Simple_repeat Simple_repeat 1 24 -12 210 37 0 0 chr1 280063292 280063319 -2130345 + (GGA)n Simple_repeat Simple_repeat 1 27 0 219 83 0 0 chr1 280063319 280063333 -2130331 + (CGG)n Simple_repeat Simple_repeat 23 36 0 578 232 183 89 chr1 280063378 280063882 -2129782 - L1M2 LINE L1 -5895 954 404 287 105 18 0 chr1 280069736 280069793 -2123871 + (TA)n Simple_repeat Simple_repeat 1 58 0 30 0 0 0 chr1 280070672 280070702 -2122962 + AT_rich Low_complexity Low_complexity 1 30 0 216 351 0 13 chr1 280070950 280071027 -2122637 + CT-rich Low_complexity Low_complexity 1 76 0 * 241 351 0 0 chr1 280070970 280071047 -2122617 + C-rich Low_complexity Low_complexity 2 78 0 24 67 0 0 chr1 280071529 280071574 -2122090 + AT_rich Low_complexity Low_complexity 1 45 0 273 119 0 0 chr1 280080511 280080553 -2113111 + (T)n Simple_repeat Simple_repeat 1 42 0 371 301 137 20 chr1 280082147 280082300 -2111364 + MIR3 SINE MIR 23 193 -15 1494 183 20 23 chr1 280082659 280082965 -2110699 - AluJo SINE Alu -7 305 1 735 253 67 77 chr1 280083666 280084069 -2109595 - MLT1K LTR MaLR -2 586 188 1830 143 0 50 chr1 280084974 280085162 -2108502 - AluSg SINE Alu -4 306 139 1736 114 31 44 chr1 280085162 280085479 -2108185 - AluSp SINE Alu 0 313 1 1830 143 0 50 chr1 280085479 280085612 -2108052 - AluSg SINE Alu -171 139 1 548 105 0 0 chr1 280085666 280085742 -2107922 - AluS SINE Alu -236 77 2 1712 139 3 50 chr1 280085770 280086114 -2107550 + AluJb SINE Alu 1 330 0 2123 108 7 0 chr1 280086353 280086649 -2107015 - AluSg SINE Alu -12 298 1 202 349 72 18 chr1 280086758 280086924 -2106740 + MIR SINE MIR 50 224 -38 293 288 229 43 chr1 280087212 280087584 -2106080 - L2 LINE L2 -15 3298 2858 1127 232 56 63 chr1 280087584 280087859 -2105805 - MLT1C LTR MaLR 0 467 195 2227 109 0 0 chr1 280087859 280088171 -2105493 - AluSx SINE Alu 0 312 1 1127 232 56 63 chr1 280088171 280088356 -2105308 - MLT1C LTR MaLR -272 195 10 207 329 83 67 chr1 280088420 280088660 -2105004 - L2 LINE L2 -579 2735 2492 487 291 35 35 chr1 280088763 280088935 -2104729 + MIR SINE MIR 20 191 -71 182 252 178 37 chr1 280089345 280089452 -2104212 - L2 LINE L2 0 3313 3192 251 227 160 0 chr1 280090666 280090741 -2102923 - MIR SINE MIR -86 176 90 1698 110 4 0 chr1 280090834 280091079 -2102585 + AluSx SINE Alu 32 277 -35 458 280 101 24 chr1 280091264 280091432 -2102232 - MIR3 SINE MIR -16 192 12 183 253 160 27 chr1 280092048 280092123 -2101541 + MIR SINE MIR 178 262 0 1430 144 8 27 chr1 280092534 280092791 -2100873 - AluJo SINE Alu -34 278 27 492 249 85 42 chr1 280092794 280092959 -2100705 - MIR SINE MIR -70 192 21 318 157 16 157 chr1 280093048 280093082 -2100582 + L1ME4a LINE L1 6016 6053 -68 2034 121 10 3 chr1 280093082 280093389 -2100275 - AluSx SINE Alu -1 311 3 318 157 16 157 chr1 280093389 280093475 -2100189 + L1ME4a LINE L1 6053 6119 -2 449 368 20 15 chr1 280093502 280093703 -2099961 - MIR SINE MIR -59 203 2 577 153 8 25 chr1 280093748 280093866 -2099798 + L1MB5 LINE L1 5914 6029 -145 1896 90 0 0 chr1 280093868 280094123 -2099541 - AluSg SINE Alu -6 304 50 2086 109 10 0 chr1 280094175 280094479 -2099185 - AluSx SINE Alu -4 308 2 623 251 66 16 chr1 280094663 280094846 -2098818 - MIR SINE MIR -48 214 23 2013 141 0 0 chr1 280095718 280096030 -2097634 - AluSx SINE Alu 0 312 1 313 346 156 25 chr1 280096185 280096468 -2097196 + L2 LINE L2 2580 2899 -415 251 281 190 61 chr1 280096408 280096671 -2096993 - L2 LINE L2 -4 3268 2972 * 562 314 62 52 chr1 280096818 280097299 -2096365 - L2 LINE L2 -530 2784 2299 251 111 0 22 chr1 280097755 280097800 -2095864 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 422 190 0 13 chr1 280098195 280098274 -2095390 - MER69 DNA AcHobo 0 2526 2449 * 596 284 0 0 chr1 280098266 280098414 -2095250 - MER69 DNA AcHobo -2376 150 3 284 349 63 0 chr1 280098547 280098673 -2094991 + MIR SINE MIR 117 250 -12 249 308 108 41 chr1 280098701 280098728 -2094936 + L2 LINE L2 3106 3130 -183 1647 179 7 7 chr1 280098728 280099025 -2094639 - AluJb SINE Alu -15 297 1 249 308 108 41 chr1 280099025 280099179 -2094485 + L2 LINE L2 3130 3303 -10 192 77 0 0 chr1 280099179 280099205 -2094459 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 249 308 108 41 chr1 280099205 280099217 -2094447 + L2 LINE L2 3303 3313 0 240 253 165 0 chr1 280099684 280099775 -2093889 + MIR SINE MIR 156 261 -1 302 242 11 84 chr1 280099934 280100029 -2093635 + L2 LINE L2 3180 3267 -5 203 156 0 0 chr1 280100315 280100347 -2093317 + CT-rich Low_complexity Low_complexity 2 33 0 341 323 8 39 chr1 280100391 280100521 -2093143 + MIR SINE MIR 79 204 -58 375 235 72 42 chr1 280101045 280101094 -2092570 + L2 LINE L2 1910 1956 -1358 1758 152 40 10 chr1 280101094 280101397 -2092267 - AluJo SINE Alu 0 312 1 375 235 72 42 chr1 280101397 280101513 -2092151 + L2 LINE L2 1956 2080 -1234 1752 228 22 16 chr1 280101513 280101965 -2091699 + MLT1C LTR MaLR 1 455 -12 193 299 39 13 chr1 280102091 280102168 -2091496 + L2 LINE L2 2976 3054 -218 988 256 172 8 chr1 280102222 280102582 -2091082 + LTR16C LTR ERVL 73 491 0 229 271 0 43 chr1 280102730 280102800 -2090864 + MER58A DNA MER1_type 1 67 -157 * 653 248 8 0 chr1 280102779 280102912 -2090752 + MER58B DNA MER1_type 208 341 0 572 262 99 83 chr1 280102928 280103360 -2090304 - MLT1H LTR MaLR 0 549 111 436 287 0 25 chr1 280103404 280103526 -2090138 + L2 LINE L2 3154 3272 0 400 371 100 0 chr1 280103542 280103771 -2089893 - MIR SINE MIR 0 262 11 227 102 102 0 chr1 280103831 280103880 -2089784 + T-rich Low_complexity Low_complexity 1 54 0 279 306 74 19 chr1 280104262 280104370 -2089294 - L2 LINE L2 0 3272 3159 503 316 62 39 chr1 280104561 280104817 -2088847 + MIR SINE MIR 1 262 0 321 284 112 37 chr1 280104875 280105009 -2088655 - L2 LINE L2 -1 3312 3169 239 188 101 14 chr1 280106039 280106108 -2087556 - MIR SINE MIR 0 262 188 616 233 74 48 chr1 280106150 280106339 -2087325 - MIR SINE MIR -57 205 12 218 224 86 17 chr1 280106415 280106473 -2087191 + L2 LINE L2 3145 3206 -66 423 0 0 0 chr1 280106523 280106570 -2087094 + (TG)n Simple_repeat Simple_repeat 2 48 0 895 159 0 0 chr1 280108060 280108192 -2085472 + FLAM_C SINE Alu 2 133 0 3007 232 16 5 chr1 280108943 280109582 -2084082 + MER82 DNA MER2_type 1 646 -7 528 233 173 0 chr1 280109668 280109818 -2083846 - MER45A DNA AcHobo -2 176 1 236 318 11 45 chr1 280109942 280110030 -2083634 - L2 LINE L2 -208 3064 2980 749 272 33 9 chr1 280110120 280110333 -2083331 - MIR SINE MIR -10 252 35 269 295 112 11 chr1 280110603 280110715 -2082949 - MIR3 SINE MIR -50 212 113 222 37 0 0 chr1 280110715 280110742 -2082922 + (CAGG)n Simple_repeat Simple_repeat 3 29 0 269 295 112 11 chr1 280110742 280110817 -2082847 - MIR3 SINE MIR -149 113 3 468 263 32 3 chr1 280112984 280113172 -2080492 - MIR SINE MIR -3 259 8 222 118 0 0 chr1 280116283 280116317 -2077347 + (T)n Simple_repeat Simple_repeat 1 34 0 2157 110 0 0 chr1 280118014 280118314 -2075350 + AluSx SINE Alu 1 300 -12 1536 158 7 7 chr1 280118337 280118622 -2075042 + 7SLRNA srpRNA srpRNA 21 305 -15 21 36 0 0 chr1 280118644 280118672 -2074992 + AT_rich Low_complexity Low_complexity 1 28 0 830 264 118 38 chr1 280118713 280119202 -2074462 + L2 LINE L2 2781 3310 -3 262 326 21 0 chr1 280119391 280119486 -2074178 + MIR3 SINE MIR 102 198 -10 218 222 0 0 chr1 280120335 280120380 -2073284 + T-rich Low_complexity Low_complexity 1 45 0 182 128 26 0 chr1 280121090 280121129 -2072535 + A-rich Low_complexity Low_complexity 3 42 0 2466 30 7 0 chr1 280122588 280122888 -2070776 - AluY SINE Alu -9 302 1 605 227 31 52 chr1 280124690 280124884 -2068780 + MIR3 SINE MIR 16 205 -3 230 286 0 0 chr1 280125501 280125550 -2068114 + polypurine Low_complexity Low_complexity 3 51 0 319 339 25 0 chr1 280126552 280126670 -2066994 - MIR SINE MIR -6 256 136 415 363 47 19 chr1 280126927 280127139 -2066525 + L3b LINE CR1 1264 1481 -102 2076 115 6 10 chr1 280127544 280127857 -2065807 - AluSx SINE Alu 0 312 1 488 316 80 30 chr1 280129461 280129698 -2063966 - L3 LINE CR1 -142 1435 1187 238 349 32 40 chr1 280129710 280129836 -2063828 + MIR SINE MIR 19 143 -65 376 265 10 20 chr1 280129941 280130039 -2063625 - L3 LINE CR1 -403 1174 1078 299 333 56 68 chr1 280130300 280130534 -2063130 - L3 LINE CR1 -546 1031 801 2193 122 0 3 chr1 280130575 280130886 -2062778 - AluSx SINE Alu -2 310 1 1844 203 78 23 chr1 280131098 280131575 -2062089 + MLT1D LTR MaLR 3 505 0 906 254 4 13 chr1 280133521 280133753 -2059911 + MER96B DNA MER1_type? 1 230 -187 2179 107 37 0 chr1 280133919 280134218 -2059446 + AluSg SINE Alu 1 310 0 275 260 27 0 chr1 280134857 280134930 -2058734 - MER20B DNA MER1_type -666 117 43 1433 110 38 0 chr1 280136322 280136531 -2057133 + AluSg/x SINE Alu 89 305 -5 1027 161 6 6 chr1 280136876 280137044 -2056620 + L1MA9 LINE L1 5823 5990 -322 461 347 66 19 chr1 280137075 280137346 -2056318 - L3 LINE CR1 -33 1544 1261 612 273 18 100 chr1 280137814 280138144 -2055520 - L2 LINE L2 0 3313 3011 24 0 0 0 chr1 280139582 280139606 -2054058 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr1 280141020 280141048 -2052616 + AT_rich Low_complexity Low_complexity 1 28 0 281 233 58 50 chr1 280143359 280143479 -2050185 - L2 LINE L2 -82 3231 3111 850 216 26 5 chr1 280143506 280143696 -2049968 + L1MA9 LINE L1 5600 5793 -519 356 200 11 0 chr1 280143803 280143893 -2049771 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 2790 178 43 12 chr1 280143911 280144276 -2049388 + L1MA9 LINE L1 5782 6169 -143 294 29 0 0 chr1 280144276 280144311 -2049353 + (CA)n Simple_repeat Simple_repeat 2 36 0 2790 178 43 12 chr1 280144311 280144455 -2049209 + L1MA9 LINE L1 6169 6307 -5 515 304 103 57 chr1 280144467 280144892 -2048772 - L2 LINE L2 -252 3061 2613 334 264 120 16 chr1 280144925 280145050 -2048614 - MIR SINE MIR -7 255 118 1406 184 0 4 chr1 280145188 280145422 -2048242 + AluJo SINE Alu 1 233 -79 2263 93 0 10 chr1 280145590 280145890 -2047774 + AluSc SINE Alu 1 297 -12 1037 175 32 124 chr1 280147127 280147475 -2046189 + AluYb8 SINE Alu 2 320 0 1966 298 94 31 chr1 280148157 280149244 -2044420 + L2 LINE L2 2042 3189 -124 215 309 100 91 chr1 280151295 280151804 -2041860 - L2 LINE L2 -61 3211 2682 4406 87 7 0 chr1 280151804 280152354 -2041310 + MER41A LTR ERV1 1 554 0 215 309 100 91 chr1 280152354 280152394 -2041270 - L2 LINE L2 -590 2682 2644 242 341 156 24 chr1 280154385 280154590 -2039074 + MIR SINE MIR 27 258 -4 225 254 18 0 chr1 280155223 280155278 -2038386 + GA-rich Low_complexity Low_complexity 1 56 0 2218 116 0 0 chr1 280155370 280155680 -2037984 + AluSx SINE Alu 1 310 -2 4241 143 14 2 chr1 280156005 280156632 -2037032 + MER41B LTR ERV1 1 635 0 2031 167 129 2 chr1 280156852 280157278 -2036386 + L1MB4 LINE L1 5701 6180 0 673 174 32 5 chr1 280157282 280157490 -2036174 + GA-rich Low_complexity Low_complexity 1 202 -201 1103 69 29 6 chr1 280157490 280157664 -2036000 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 673 174 32 5 chr1 280157664 280157675 -2035989 + GA-rich Low_complexity Low_complexity 202 403 0 183 156 0 0 chr1 280158841 280158873 -2034791 + (CTG)n Simple_repeat Simple_repeat 1 32 0 38 39 0 0 chr1 280160090 280160142 -2033522 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr1 280160502 280160529 -2033135 + AT_rich Low_complexity Low_complexity 1 27 0 243 324 0 14 chr1 280161614 280161685 -2031979 + L2 LINE L2 3203 3272 -41 1377 178 23 8 chr1 280161693 280161951 -2031713 + MLT2B3 LTR ERVL 259 520 -34 29 0 0 0 chr1 280162267 280162296 -2031368 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr1 280162394 280162415 -2031249 + AT_rich Low_complexity Low_complexity 1 21 0 297 313 82 30 chr1 280163796 280163930 -2029734 + MIR3 SINE MIR 13 153 -55 357 204 178 124 chr1 280164289 280164398 -2029266 + MIR SINE MIR 18 120 -142 1892 173 0 3 chr1 280164398 280164710 -2028954 + AluJo SINE Alu 1 311 -1 357 204 178 124 chr1 280164710 280164825 -2028839 + MIR SINE MIR 120 254 -8 390 88 70 0 chr1 280164973 280165030 -2028634 - L1PA16 LINE L1 -9 6157 6097 1832 169 7 7 chr1 280165033 280165377 -2028287 - AluJb SINE Alu 0 312 1 787 287 0 10 chr1 280166536 280166738 -2026926 - MIR SINE MIR -5 257 58 23 68 0 0 chr1 280166950 280166994 -2026670 + AT_rich Low_complexity Low_complexity 1 44 0 1745 164 33 10 chr1 280167439 280167743 -2025921 + AluJo SINE Alu 1 311 -1 1007 229 86 66 chr1 280169627 280169875 -2023789 - MLT1G3 LTR MaLR 0 590 348 2054 220 67 33 chr1 280169875 280170415 -2023249 + MER74A LTR ERVL 1 558 0 1007 229 86 66 chr1 280170415 280170716 -2022948 - MLT1G3 LTR MaLR -242 348 1 23 33 0 0 chr1 280171235 280171265 -2022399 + AT_rich Low_complexity Low_complexity 1 30 0 2152 131 0 10 chr1 280172194 280172508 -2021156 - AluSx SINE Alu -1 311 1 2170 128 7 3 chr1 280173075 280173381 -2020283 - AluSx SINE Alu -5 307 1 216 97 0 0 chr1 280173505 280173536 -2020128 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 872 116 18 6 chr1 280173550 280173714 -2019950 + (TGGA)n Simple_repeat Simple_repeat 3 168 0 320 306 10 10 chr1 280174234 280174332 -2019332 + MIR3 SINE MIR 107 204 -4 222 156 0 0 chr1 280174536 280174581 -2019083 + GA-rich Low_complexity Low_complexity 2 46 0 237 132 0 0 chr1 280177064 280177102 -2016562 + (CA)n Simple_repeat Simple_repeat 1 38 0 504 142 134 37 chr1 280177373 280177507 -2016157 + L1ME3A LINE L1 5895 6041 -129 1629 153 27 37 chr1 280177717 280178011 -2015653 + AluJo SINE Alu 1 291 -21 655 295 6 0 chr1 280179498 280179668 -2013996 + MLT1F LTR MaLR 1 180 -380 780 154 0 0 chr1 280180710 280180833 -2012831 - MLT1D LTR MaLR -3 502 380 1443 149 0 21 chr1 280180835 280181070 -2012594 + AluJo SINE Alu 67 296 -16 1593 184 30 74 chr1 280181091 280181494 -2012170 - MLT1D LTR MaLR -120 385 1 5890 130 18 44 chr1 280181587 280181831 -2011833 + L1MA8 LINE L1 4362 4611 -1680 2431 177 34 2 chr1 280181831 280182243 -2011421 + MSTB LTR MaLR 2 426 0 5890 130 18 44 chr1 280182243 280183975 -2009689 + L1MA8 LINE L1 4611 6290 -1 30 27 0 0 chr1 280184298 280184335 -2009329 + AT_rich Low_complexity Low_complexity 1 37 0 449 212 221 0 chr1 280187066 280187179 -2006485 + L2 LINE L2 3175 3312 -1 2118 96 14 10 chr1 280187896 280188189 -2005475 - AluSc SINE Alu -15 294 1 331 266 198 23 chr1 280188570 280188747 -2004917 + MIR SINE MIR 12 219 -43 1053 147 13 0 chr1 280190397 280190554 -2003110 - AluJb SINE Alu -13 299 141 190 286 29 67 chr1 280190785 280190890 -2002774 - MIR SINE MIR -100 162 62 204 121 17 121 chr1 280191428 280191486 -2002178 + polypyrimidine Low_complexity Low_complexity 1 52 0 2201 123 10 0 chr1 280191487 280191796 -2001868 - AluSx SINE Alu 0 312 1 1170 232 0 0 chr1 280191995 280192219 -2001445 + MER58A DNA MER1_type 1 224 0 386 333 52 7 chr1 280192238 280192391 -2001273 + MIR3 SINE MIR 19 178 -30 230 324 27 61 chr1 280192932 280193080 -2000584 + MIR SINE MIR 44 186 -76 187 313 42 52 chr1 280193526 280193622 -2000042 + L2 LINE L2 3160 3254 -18 633 262 29 2 chr1 280194660 280194839 -1998825 + MIR SINE MIR 31 211 -51 378 286 87 31 chr1 280194922 280195083 -1998581 + MIR SINE MIR 42 211 -51 2127 114 3 0 chr1 280195937 280196253 -1997411 + AluY SINE Alu 1 317 0 2236 103 0 3 chr1 280196389 280196679 -1996985 - AluSx SINE Alu -19 293 5 207 0 0 0 chr1 280197376 280197399 -1996265 + (A)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chr1 280197414 280197453 -1996211 + AT_rich Low_complexity Low_complexity 1 39 0 1115 166 21 0 chr1 280197506 280197699 -1995965 + L1MC1 LINE L1 6018 6214 -119 216 0 0 0 chr1 280197924 280197948 -1995716 + (TG)n Simple_repeat Simple_repeat 2 25 0 284 197 0 26 chr1 280198003 280198079 -1995585 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 23 0 0 0 chr1 280200645 280200668 -1992996 + AT_rich Low_complexity Low_complexity 1 23 0 237 273 16 26 chr1 280200965 280201106 -1992558 + T-rich Low_complexity Low_complexity 1 139 0 2583 130 33 26 chr1 280201204 280201628 -1992036 + MSTA LTR MaLR 2 428 0 253 139 0 0 chr1 280202750 280202793 -1990871 + MER63A DNA MER1_type 1 43 -167 221 91 0 0 chr1 280202908 280202941 -1990723 + (G)n Simple_repeat Simple_repeat 1 33 0 657 233 40 13 chr1 280202952 280203102 -1990562 + MER63A DNA MER1_type 57 210 0 257 203 43 0 chr1 280203158 280203227 -1990437 - MLT1L LTR MaLR -8 607 536 226 325 0 40 chr1 280203227 280203284 -1990380 - LTR67 LTR ERVL -8 549 429 788 257 6 11 chr1 280203504 280203683 -1989981 - MER45A DNA AcHobo 0 178 1 755 196 94 86 chr1 280203765 280204020 -1989644 + MLT1F1 LTR MaLR 305 561 -6 819 239 158 29 chr1 280204029 280204339 -1989325 + Charlie7 DNA MER1_type 276 625 -1987 283 206 93 21 chr1 280204360 280204457 -1989207 + Charlie7 DNA MER1_type 2508 2611 -1 978 237 78 131 chr1 280204771 280205885 -1987779 - L1ME3A LINE L1 -1 6169 5121 889 241 62 68 chr1 280206000 280206528 -1987136 - L1ME3A LINE L1 -1239 4907 4383 360 0 0 0 chr1 280207079 280207119 -1986545 + (TG)n Simple_repeat Simple_repeat 2 41 0 543 291 77 38 chr1 280207119 280207572 -1986092 + L2 LINE L2 2813 3283 -30 2377 88 0 0 chr1 280207940 280208235 -1985429 - AluY SINE Alu -16 295 1 24 0 0 0 chr1 280208631 280208655 -1985009 + AT_rich Low_complexity Low_complexity 1 24 0 2449 87 0 0 chr1 280211676 280211988 -1981676 + AluSx SINE Alu 1 312 0 534 138 0 0 chr1 280214459 280214539 -1979125 + MADE1 DNA Mariner 1 80 0 300 341 53 0 chr1 280215063 280215195 -1978469 + MIR SINE MIR 98 236 -26 2465 96 0 0 chr1 280215524 280215826 -1977838 + AluSg SINE Alu 1 302 -8 189 231 0 0 chr1 280217500 280217552 -1976112 - L2 LINE L2 0 3313 3262 463 84 56 0 chr1 280217812 280217883 -1975781 - MER41A LTR ERV1 -89 465 391 325 337 55 49 chr1 280217936 280218099 -1975565 + MIR SINE MIR 26 189 -73 549 294 79 9 chr1 280219316 280219530 -1974134 - MIR SINE MIR -1 261 33 855 145 8 0 chr1 280219733 280219864 -1973800 + FLAM_C SINE Alu 1 132 -1 211 367 0 11 chr1 280220044 280220134 -1973530 + L3 LINE CR1 1485 1573 -4 490 56 42 0 chr1 280220155 280220227 -1973437 - L1PA5 LINE L1 -17 6137 6063 1994 127 23 16 chr1 280221017 280221495 -1972169 - AluSq SINE Alu 0 480 1 195 308 28 47 chr1 280221541 280221648 -1972016 + L3 LINE CR1 1211 1315 -262 1705 175 10 10 chr1 280221683 280221974 -1971690 + AluJo SINE Alu 1 291 -21 999 119 33 91 chr1 280221986 280222196 -1971468 + L1MC1 LINE L1 6136 6333 0 1115 169 0 0 chr1 280222967 280223133 -1970531 + AluJo SINE Alu 1 166 -146 557 307 112 9 chr1 280224846 280225061 -1968603 + MIR SINE MIR 20 256 -6 1456 176 0 18 chr1 280225734 280226007 -1967657 - AluJo SINE Alu -19 293 26 291 258 39 70 chr1 280226651 280226779 -1966885 - MIR SINE MIR -62 146 23 197 301 120 38 chr1 280228483 280228616 -1965048 + L2 LINE L2 3169 3312 -1 4358 159 15 1 chr1 280229568 280230299 -1963365 + L1PB3 LINE L1 5410 6150 -4 21 0 0 0 chr1 280230299 280230320 -1963344 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 0 0 chr1 280230485 280230525 -1963139 + (CA)n Simple_repeat Simple_repeat 1 40 0 2458 31 0 0 chr1 280230583 280230870 -1962794 + L1PA5 LINE L1 5865 6151 -3 2044 107 24 0 chr1 280230973 280231263 -1962401 + AluSx SINE Alu 1 297 -15 2203 104 0 0 chr1 280232474 280232771 -1960893 - AluSx SINE Alu -15 297 1 191 368 63 11 chr1 280233576 280233671 -1959993 - L2 LINE L2 -61 3211 3112 281 389 76 6 chr1 280233889 280234205 -1959459 - L2 LINE L2 -1045 2269 1932 760 148 0 8 chr1 280234281 280234403 -1959261 + FLAM_A SINE Alu 1 121 -12 1394 155 68 30 chr1 280234624 280234920 -1958744 - AluJo SINE Alu 0 312 6 186 294 101 64 chr1 280234923 280235032 -1958632 + L2 LINE L2 3189 3301 -12 229 333 8 17 chr1 280236126 280236243 -1957421 - HAL1b LINE L1 -42 1306 1191 1247 153 6 127 chr1 280236451 280236797 -1956867 - AluJo SINE Alu -8 304 1 180 0 0 0 chr1 280237215 280237235 -1956429 + (CTG)n Simple_repeat Simple_repeat 3 22 0 254 305 57 38 chr1 280237282 280237387 -1956277 + MIR SINE MIR 50 156 -106 316 201 141 3 chr1 280238144 280238255 -1955409 + L1ME4a LINE L1 5693 5817 -304 855 143 0 0 chr1 280238269 280238402 -1955262 + AluSq/x SINE Alu 1 133 -180 244 302 13 57 chr1 280238550 280238709 -1954955 + HAL1b LINE L1 1197 1348 0 1194 297 66 14 chr1 280239330 280239903 -1953761 - L2 LINE L2 0 3313 2708 1554 179 13 7 chr1 280239915 280240216 -1953448 - AluJb SINE Alu -9 303 1 2121 102 0 7 chr1 280240584 280240888 -1952776 + AluSc SINE Alu 1 302 -7 21 0 0 0 chr1 280241285 280241306 -1952358 + AT_rich Low_complexity Low_complexity 1 21 0 438 255 29 0 chr1 280242084 280242186 -1951478 + MIR SINE MIR 50 154 -108 290 247 67 40 chr1 280243246 280243396 -1950268 + L1ME4a LINE L1 5964 6117 -4 427 194 222 0 chr1 280243969 280244077 -1949587 + MER58B DNA MER1_type 175 306 -35 1403 166 9 4 chr1 280244077 280244306 -1949358 + MER46A DNA MER2_type 1 230 -6 820 192 36 9 chr1 280244340 280244510 -1949154 + MER97a DNA MER1_type? 564 743 -151 2060 115 3 10 chr1 280244510 280244823 -1948841 + AluSx SINE Alu 1 311 -1 820 192 36 9 chr1 280244823 280244876 -1948788 + MER97a DNA MER1_type? 743 793 -101 313 125 161 0 chr1 280244884 280244940 -1948724 - MLT1B LTR MaLR 0 390 326 1372 13 0 0 chr1 280245449 280245602 -1948062 + L1P2 LINE L1 5623 5775 -380 272 202 8 40 chr1 280245716 280245840 -1947824 + (CATATA)n Simple_repeat Simple_repeat 4 123 0 310 248 131 51 chr1 280245892 280245946 -1947718 - MIR SINE MIR -8 254 206 2384 160 19 21 chr1 280245946 280246301 -1947363 + MSTB LTR MaLR 1 356 -70 2200 97 3 3 chr1 280246301 280246610 -1947054 - AluSg SINE Alu 0 310 2 2384 160 19 21 chr1 280246610 280246680 -1946984 + MSTB LTR MaLR 356 425 -1 310 248 131 51 chr1 280246680 280246762 -1946902 - MIR SINE MIR -56 206 107 262 244 198 0 chr1 280247036 280247122 -1946542 - MIR SINE MIR -86 176 74 180 246 62 46 chr1 280247781 280247846 -1945818 - L2 LINE L2 -2496 818 753 2501 29 19 13 chr1 280247859 280248172 -1945492 - L1PA4 LINE L1 -1 6154 5840 303 240 200 0 chr1 280249210 280249310 -1944354 - MER103 DNA DNA -9 157 38 227 345 67 29 chr1 280249363 280249572 -1944092 - L2 LINE L2 -535 2779 2563 459 286 78 80 chr1 280251346 280251856 -1941808 - MLT1J LTR MaLR -1 510 2 2097 76 3 21 chr1 280251909 280252225 -1941439 + AluSp SINE Alu 1 311 0 288 222 127 0 chr1 280252225 280252288 -1941376 + FLAM_A SINE Alu 1 71 -61 391 243 0 0 chr1 280253505 280253579 -1940085 - MIR SINE MIR -188 74 1 560 173 8 55 chr1 280254748 280254875 -1938789 + AluJ SINE Alu 2 122 -190 825 171 13 7 chr1 280254918 280255103 -1938561 + AluJ SINE Alu 129 314 0 907 141 0 0 chr1 280255603 280255738 -1937926 + AluSg/x SINE Alu 161 295 -17 2245 89 0 13 chr1 280255752 280256055 -1937609 + AluY SINE Alu 1 299 -12 1719 157 7 10 chr1 280256135 280256434 -1937230 + AluJo SINE Alu 2 299 -13 2245 194 98 6 chr1 280257176 280257646 -1936018 + MLT2B2 LTR ERVL 1 513 -2 394 304 77 51 chr1 280257950 280258093 -1935571 + L1MEc LINE L1 805 943 -5176 2085 99 14 0 chr1 280258093 280258387 -1935277 + AluSq SINE Alu 1 298 -15 394 304 77 51 chr1 280258387 280258503 -1935161 + L1MEc LINE L1 943 1074 -5045 621 138 164 17 chr1 280258503 280258619 -1935045 + FLAM_C SINE Alu 1 133 0 394 304 77 51 chr1 280258619 280258631 -1935033 + L1MEc LINE L1 1074 1084 -5035 238 89 18 54 chr1 280258650 280258706 -1934958 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 607 317 82 40 chr1 280258713 280259237 -1934427 + L1MEc LINE L1 1173 1718 -772 2578 270 54 22 chr1 280259660 280260737 -1932927 + L1MEc LINE L1 2390 3510 -2619 2083 108 0 3 chr1 280260737 280261032 -1932632 + AluSg SINE Alu 1 294 -16 2578 270 54 22 chr1 280261032 280261152 -1932512 + L1MEc LINE L1 3510 3625 -2504 425 205 8 59 chr1 280261210 280261481 -1932183 + GA-rich Low_complexity Low_complexity 1 257 0 305 207 12 61 chr1 280261516 280261598 -1932066 + L1MEc LINE L1 3745 3822 -2307 624 230 40 59 chr1 280261607 280261829 -1931835 + L1MC4 LINE L1 7748 7965 -77 310 224 13 0 chr1 280262008 280262084 -1931580 + L1MC4a LINE L1 3566 3642 -2504 483 231 19 0 chr1 280262142 280262302 -1931362 + GA-rich Low_complexity Low_complexity 3 165 0 305 207 12 61 chr1 280262327 280262409 -1931255 + L1MC4a LINE L1 3762 3839 -2307 663 236 39 56 chr1 280262418 280262651 -1931013 + L1MC4 LINE L1 7748 7976 -66 1005 254 11 21 chr1 280262709 280262993 -1930671 + L1MC4a LINE L1 3837 4117 -2029 363 296 78 37 chr1 280263251 280263494 -1930170 + L1MC4a LINE L1 4456 4708 -1438 822 144 0 0 chr1 280263494 280263619 -1930045 + FLAM_C SINE Alu 1 125 -18 1207 226 21 0 chr1 280263650 280263929 -1929735 + L1MC4a LINE L1 5259 5543 -816 378 249 129 24 chr1 280263931 280264140 -1929524 - L1M3 LINE L1 -676 5504 5274 356 319 17 0 chr1 280264629 280264748 -1928916 + MIR SINE MIR 1 121 -141 1323 214 70 39 chr1 280264805 280265193 -1928471 + MLT1F1 LTR MaLR 121 520 -47 270 224 0 0 chr1 280265540 280265598 -1928066 + L2 LINE L2 3255 3312 -1 325 252 63 46 chr1 280265671 280265831 -1927833 + MIR3 SINE MIR 10 163 -94 1722 168 30 0 chr1 280265916 280266219 -1927445 + AluJb SINE Alu 1 312 0 347 277 16 118 chr1 280266329 280266643 -1927021 + L1MC4a LINE L1 5770 6053 -68 1802 116 56 0 chr1 280266861 280267129 -1926535 + AluSx SINE Alu 12 294 -18 1351 184 6 102 chr1 280267205 280267537 -1926127 + AluJo SINE Alu 2 301 -1 2089 102 10 3 chr1 280268685 280268980 -1924684 + AluSx SINE Alu 1 297 -15 353 304 137 37 chr1 280269123 280269353 -1924311 + MIR SINE MIR 5 244 -18 1650 197 12 27 chr1 280269430 280269760 -1923904 + MLT1A1 LTR MaLR 2 326 -39 956 210 42 19 chr1 280270005 280270219 -1923445 + MER58A DNA MER1_type 6 224 0 306 297 65 14 chr1 280270481 280270619 -1923045 + MIR3 SINE MIR 4 148 -60 311 103 0 17 chr1 280271861 280271919 -1921745 + (TTTTC)n Simple_repeat Simple_repeat 4 60 0 371 348 28 22 chr1 280272155 280272336 -1921328 + MIR SINE MIR 26 207 -55 2064 128 0 0 chr1 280273499 280273795 -1919869 - AluSx SINE Alu -16 296 1 258 145 0 51 chr1 280273991 280274108 -1919556 + (GA)n Simple_repeat Simple_repeat 2 112 0 360 205 0 53 chr1 280274164 280274335 -1919329 + GA-rich Low_complexity Low_complexity 2 163 0 408 147 0 49 chr1 280274336 280274520 -1919144 + (GA)n Simple_repeat Simple_repeat 2 176 0 407 176 0 53 chr1 280274531 280275097 -1918567 + GA-rich Low_complexity Low_complexity 1 536 0 5830 148 9 17 chr1 280275756 280275803 -1917861 - L1PA15 LINE L1 -5 6160 6114 2094 115 0 0 chr1 280275803 280276098 -1917566 - AluSx SINE Alu -17 295 1 5830 148 9 17 chr1 280276098 280277097 -1916567 - L1PA15 LINE L1 -51 6114 5130 1774 130 70 57 chr1 280277097 280277467 -1916197 + THE1C LTR MaLR 1 375 0 5830 148 9 17 chr1 280277467 280277772 -1915892 - L1PA15 LINE L1 -1035 5130 4824 857 193 82 34 chr1 280277939 280278006 -1915658 + AluJo SINE Alu 74 136 -176 2092 102 3 0 chr1 280278006 280278319 -1915345 + AluSp SINE Alu 1 314 0 857 193 82 34 chr1 280278319 280278457 -1915207 + AluJo SINE Alu 136 290 -22 657 289 98 10 chr1 280279090 280279498 -1914166 + L1ME4a LINE L1 5678 6121 0 2399 61 3 13 chr1 280279806 280280118 -1913546 + AluY SINE Alu 1 309 -2 240 139 0 0 chr1 280280153 280280196 -1913468 - Alu SINE Alu 0 308 266 527 114 0 0 chr1 280280203 280280273 -1913391 + AluSq SINE Alu 137 206 -107 283 105 0 0 chr1 280280274 280280312 -1913352 - AluSc SINE Alu -64 235 198 1260 70 94 0 chr1 280280736 280280907 -1912757 - AluSq SINE Alu -126 187 1 2265 94 0 0 chr1 280281261 280281560 -1912104 + AluSq SINE Alu 1 299 -14 269 351 74 0 chr1 280281722 280281870 -1911794 + MIR3 SINE MIR 46 204 -4 186 209 0 0 chr1 280281895 280281938 -1911726 + (TG)n Simple_repeat Simple_repeat 2 44 0 316 337 58 15 chr1 280282019 280282224 -1911440 - MIR SINE MIR -3 259 46 322 275 12 12 chr1 280283016 280283096 -1910568 + MIR3 SINE MIR 88 167 -41 1635 143 0 41 chr1 280283120 280283413 -1910251 - AluJo SINE Alu -31 281 1 192 158 0 0 chr1 280284705 280284743 -1908921 + (CA)n Simple_repeat Simple_repeat 2 39 0 494 263 81 27 chr1 280284799 280285008 -1908656 - MIR SINE MIR 0 262 39 308 227 27 27 chr1 280285303 280285378 -1908286 + MER5B DNA MER1_type 1 75 -103 1319 224 22 42 chr1 280285382 280285739 -1907925 + MLT1A1 LTR MaLR 15 364 -1 2164 104 3 0 chr1 280285784 280286083 -1907581 - AluSc SINE Alu -9 300 1 2085 244 51 33 chr1 280286165 280286437 -1907227 - L1MC4 LINE L1 -144 7898 7632 1691 172 0 10 chr1 280286437 280286739 -1906925 - AluJo SINE Alu -13 299 1 2085 244 51 33 chr1 280286739 280287072 -1906592 - L1MC4 LINE L1 -410 7632 7282 211 184 0 0 chr1 280287144 280287182 -1906482 + MER5B DNA MER1_type 141 178 0 438 208 179 19 chr1 280287318 280287424 -1906240 - L2 LINE L2 -3 3269 3147 271 229 281 10 chr1 280287493 280287589 -1906075 - MIR SINE MIR 0 262 141 500 307 57 5 chr1 280287734 280288056 -1905608 + L1MB7 LINE L1 5437 5789 -391 1444 158 93 22 chr1 280288200 280288478 -1905186 + AluJb SINE Alu 1 298 -14 882 192 36 10 chr1 280288893 280289086 -1904578 - AluJo SINE Alu -114 198 1 281 289 205 47 chr1 280289356 280289737 -1903927 - L2 LINE L2 -10 3303 2863 2073 114 0 37 chr1 280289787 280290111 -1903553 - AluSx SINE Alu 0 312 1 326 286 34 54 chr1 280290114 280290261 -1903403 - L2 LINE L2 -532 2782 2639 336 123 0 0 chr1 280291218 280291275 -1902389 + L1MB7 LINE L1 5773 5829 -355 2694 130 36 7 chr1 280291275 280291714 -1901950 - Tigger2 DNA MER2_type 0 2718 2267 274 269 0 0 chr1 280291700 280291767 -1901897 - Tigger2 DNA MER2_type -2651 67 1 * 1570 197 14 39 chr1 280291768 280292074 -1901590 + L1MB7 LINE L1 5829 6126 -58 1732 168 14 0 chr1 280292074 280292365 -1901299 - AluJo SINE Alu -17 295 1 1570 197 14 39 chr1 280292365 280292414 -1901250 + L1MB7 LINE L1 6126 6175 -9 389 209 0 23 chr1 280292423 280292509 -1901155 + MER5B DNA MER1_type 59 142 -36 903 111 22 0 chr1 280292511 280292646 -1901018 + L1MA5A LINE L1 6012 6149 -148 788 148 8 0 chr1 280292649 280292771 -1900893 - FLAM_C SINE Alu -19 124 2 899 142 0 26 chr1 280292773 280292928 -1900736 + L1MA5A LINE L1 6135 6285 -12 2358 70 3 0 chr1 280292928 280293227 -1900437 - AluSp SINE Alu -13 300 1 349 98 20 0 chr1 280293270 280293321 -1900343 - MER5B DNA MER1_type -124 54 3 333 237 122 65 chr1 280293324 280293463 -1900201 - MIR3 SINE MIR -49 159 13 1717 151 20 3 chr1 280294263 280294568 -1899096 - AluJb SINE Alu -2 310 1 1702 102 4 24 chr1 280294728 280295017 -1898647 - AluSx SINE Alu 0 319 36 227 318 93 31 chr1 280295413 280295542 -1898122 - MIR SINE MIR -71 191 55 198 118 0 0 chr1 280295640 280295674 -1897990 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1788 159 19 10 chr1 280295781 280295903 -1897761 + AluSx SINE Alu 1 120 -192 258 32 0 0 chr1 280295903 280295934 -1897730 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1788 159 19 10 chr1 280295934 280296093 -1897571 + AluSx SINE Alu 120 288 -24 180 0 0 0 chr1 280296093 280296113 -1897551 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1788 159 19 10 chr1 280296113 280296138 -1897526 + AluSx SINE Alu 288 311 -1 3839 160 42 24 chr1 280296786 280296854 -1896810 - LTR8A LTR ERV1 0 727 662 1507 122 35 0 chr1 280296854 280297083 -1896581 + AluSc SINE Alu 56 292 -17 3839 160 42 24 chr1 280297083 280297728 -1895936 - LTR8A LTR ERV1 -65 662 1 2156 69 4 0 chr1 280297861 280298138 -1895526 + AluSq SINE Alu 1 278 -35 201 39 0 0 chr1 280298145 280298171 -1895493 + (GA)n Simple_repeat Simple_repeat 1 26 0 185 254 36 18 chr1 280298411 280298466 -1895198 - L2 LINE L2 -535 2779 2724 2475 49 0 0 chr1 280298810 280299116 -1894548 - AluY SINE Alu -5 306 1 2143 109 7 0 chr1 280299335 280299637 -1894027 + AluSx SINE Alu 7 310 -2 444 283 63 19 chr1 280300193 280300352 -1893312 - MIR SINE MIR -69 193 28 2237 98 0 0 chr1 280300403 280300710 -1892954 + AluSx SINE Alu 1 307 -5 228 279 39 85 chr1 280300902 280301031 -1892633 - MIR3 SINE MIR -81 127 5 1015 186 68 168 chr1 280301487 280301999 -1891665 + L1MC4 LINE L1 6469 6929 -1113 4063 146 15 48 chr1 280302015 280302762 -1890902 + MER50 LTR ERV1 1 722 -12 6692 125 17 30 chr1 280302762 280304549 -1889115 + MER50-int LTR ERV1 7 1849 -5356 6120 208 17 21 chr1 280304545 280305720 -1887944 + MER50-int LTR ERV1 2789 3958 -3247 * 2229 98 18 0 chr1 280305750 280306078 -1887586 - L1MA3 LINE L1 0 6305 5972 228 67 0 0 chr1 280306414 280306444 -1887220 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2035 261 38 39 chr1 280306444 280306915 -1886749 + L1MC4 LINE L1 7090 7561 -481 1856 130 20 7 chr1 280306915 280307216 -1886448 + AluJb SINE Alu 1 305 -7 2035 261 38 39 chr1 280307216 280307429 -1886235 + L1MC4 LINE L1 7561 7773 -269 1951 205 44 31 chr1 280307443 280307897 -1885767 - MLT1C LTR MaLR 0 467 8 328 229 14 0 chr1 280307916 280307986 -1885678 + L1MC4 LINE L1 7827 7897 -145 1368 131 45 47 chr1 280308019 280308145 -1885519 - LTR54 LTR ERV1 0 510 385 2895 71 3 6 chr1 280308145 280308510 -1885154 + THE1B LTR MaLR 1 364 0 1368 131 45 47 chr1 280308510 280308831 -1884833 - LTR54 LTR ERV1 -125 385 1 254 185 15 31 chr1 280308831 280308878 -1884786 + L1MC4 LINE L1 7932 7978 -60 1889 138 3 7 chr1 280308878 280309010 -1884654 + AluJb SINE Alu 1 132 -180 450 0 0 0 chr1 280309010 280309060 -1884604 + (TA)n Simple_repeat Simple_repeat 2 51 0 1889 138 3 7 chr1 280309060 280309217 -1884447 + AluJb SINE Alu 132 289 -23 254 185 15 31 chr1 280309217 280309234 -1884430 + L1MC4 LINE L1 7978 8038 0 2205 108 0 0 chr1 280309444 280309739 -1883925 - AluSc SINE Alu -14 295 1 1777 180 3 0 chr1 280310295 280310682 -1882982 - AluJo SINE Alu 0 388 1 258 222 26 150 chr1 280310906 280311059 -1882605 - LTR28 LTR ERV1 -56 964 831 935 252 115 71 chr1 280311066 280311613 -1882051 - LTR1B LTR ERV1 -223 603 33 1035 172 0 0 chr1 280311619 280311788 -1881876 - AluJb SINE Alu -143 169 1 341 274 18 9 chr1 280312110 280312220 -1881444 - L1MCa LINE L1 -1339 6983 1996 2226 102 3 3 chr1 280312229 280312542 -1881122 - AluSp SINE Alu 0 313 1 545 267 0 15 chr1 280313045 280313176 -1880488 - HERV16 LTR ERVL -2870 2126 1998 1859 142 3 19 chr1 280313381 280313692 -1879972 - AluJo SINE Alu -6 306 1 1928 214 44 65 chr1 280314399 280314782 -1878882 - MER74B LTR ERVL 0 622 253 1054 155 11 11 chr1 280314782 280314956 -1878708 - FAM SINE Alu -1 174 1 1928 214 44 65 chr1 280314956 280315138 -1878526 - MER74B LTR ERVL -369 253 69 2509 305 63 9 chr1 280315178 280316056 -1877608 - HERV16 LTR ERVL -4054 942 18 804 152 0 0 chr1 280316084 280316209 -1877455 - FLAM_C SINE Alu -17 126 2 1038 218 267 7 chr1 280316236 280316539 -1877125 - LTR16A LTR ERVL -1 449 68 2540 55 0 0 chr1 280316927 280317234 -1876430 + AluY SINE Alu 1 307 -4 571 152 0 0 chr1 280317406 280317498 -1876166 + FLAM_A SINE Alu 42 133 -9 207 100 0 0 chr1 280317988 280318018 -1875646 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 348 151 38 104 chr1 280318244 280318350 -1875314 + MER53 DNA DNA 1 99 -90 378 156 18 110 chr1 280318377 280318486 -1875178 + MER53 DNA DNA 9 107 -82 1290 137 78 78 chr1 280319287 280319424 -1874240 + AluJo SINE Alu 9 145 -167 1760 154 0 23 chr1 280319424 280319730 -1873934 + AluJb SINE Alu 5 303 -9 1290 137 78 78 chr1 280319730 280319876 -1873788 + AluJo SINE Alu 144 292 -20 287 204 114 11 chr1 280319992 280320080 -1873584 + MIR3 SINE MIR 76 172 -36 1394 116 0 43 chr1 280320087 280320320 -1873344 + AluSg/x SINE Alu 84 306 -6 194 0 39 0 chr1 280320413 280320439 -1873225 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1946 120 21 0 chr1 280320442 280320725 -1872939 - AluSx SINE Alu -23 289 1 239 250 0 0 chr1 280320834 280320882 -1872782 + MLT1E LTR MaLR 4 51 -573 1079 182 141 35 chr1 280321058 280321144 -1872520 + MLT1E LTR MaLR 172 247 -346 2172 105 0 0 chr1 280321144 280321439 -1872225 + AluSq SINE Alu 3 297 -16 1079 182 141 35 chr1 280321439 280321703 -1871961 + MLT1E LTR MaLR 247 545 -48 190 274 78 0 chr1 280322538 280322589 -1871075 + MIR3 SINE MIR 110 164 -44 * 311 277 24 0 chr1 280322573 280322656 -1871008 + MIR SINE MIR 178 262 0 2149 93 0 14 chr1 280322762 280323079 -1870585 - AluSx SINE Alu 0 313 1 1867 137 25 195 chr1 280323088 280323651 -1870013 + MLT1C LTR MaLR 1 467 0 811 191 0 0 chr1 280323946 280324082 -1869582 - FLAM_C SINE Alu -1 142 7 1515 175 81 1 chr1 280324167 280324538 -1869126 - MER57A LTR ERV1 -5 429 1 360 0 0 0 chr1 280325249 280325289 -1868375 + (TG)n Simple_repeat Simple_repeat 2 41 0 692 206 0 8 chr1 280325290 280325416 -1868248 - FLAM_C SINE Alu -17 126 2 258 366 49 29 chr1 280325447 280325652 -1868012 + L2 LINE L2 2440 2648 -666 441 261 210 5 chr1 280325705 280325900 -1867764 - MIR SINE MIR -26 236 2 269 308 196 9 chr1 280325900 280326095 -1867569 + L2 LINE L2 2731 2967 -347 299 311 58 0 chr1 280326176 280326279 -1867385 - MIR SINE MIR -65 197 89 2120 213 80 76 chr1 280326345 280326973 -1866691 - L1ME1 LINE L1 0 6402 5773 3051 291 93 22 chr1 280326979 280328184 -1865480 - L1ME1 LINE L1 -1949 4433 3045 2583 77 0 0 chr1 280328184 280328495 -1865169 - AluY SINE Alu 0 311 1 3051 291 93 22 chr1 280328495 280329149 -1864515 - L1ME1 LINE L1 -3337 3045 2439 4049 231 32 12 chr1 280329152 280329736 -1863928 + MER21B LTR ERV1 1 609 -254 1241 247 54 18 chr1 280329736 280330068 -1863596 - MER2 DNA MER2_type 0 344 1 4049 231 32 12 chr1 280330068 280330318 -1863346 + MER21B LTR ERV1 609 852 -11 548 272 30 34 chr1 280330332 280330600 -1863064 - L1ME1 LINE L1 -4087 2476 2210 358 216 9 18 chr1 280330605 280330716 -1862948 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 1244 284 47 24 chr1 280330719 280331113 -1862551 - L1ME1 LINE L1 -4358 2205 1822 870 40 0 0 chr1 280331113 280331212 -1862452 - L1PA3 LINE L1 0 6155 6057 1244 284 47 24 chr1 280331212 280331459 -1862205 - L1ME1 LINE L1 -4741 1822 1394 1703 157 0 8 chr1 280331550 280331811 -1861853 + AluJo SINE Alu 1 259 -53 845 143 21 13 chr1 280331828 280332052 -1861612 + GA-rich Low_complexity Low_complexity 1 225 0 896 119 6 17 chr1 280332788 280332964 -1860700 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 192 125 0 0 chr1 280332978 280333010 -1860654 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 277 111 44 0 chr1 280333010 280333055 -1860609 + GA-rich Low_complexity Low_complexity 5 51 0 690 215 0 0 chr1 280333058 280333165 -1860499 - FLAM_C SINE Alu -35 108 2 2541 267 86 42 chr1 280333166 280334356 -1859308 - L1ME LINE L1 -4790 1290 36 207 100 0 0 chr1 280334505 280334535 -1859129 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 4953 50 8 0 chr1 280334596 280335200 -1858464 + L1PA6 LINE L1 5332 5940 -214 2449 140 6 127 chr1 280335498 280335883 -1857781 + MER44D DNA MER2_type 9 357 -2130 1636 171 7 7 chr1 280335883 280336175 -1857489 - AluJb SINE Alu -20 292 1 2449 140 6 127 chr1 280336175 280336395 -1857269 + MER44D DNA MER2_type 357 602 -3 430 259 49 74 chr1 280337219 280337462 -1856202 + MER102b DNA MER1_type 105 341 0 2145 137 0 0 chr1 280337593 280337886 -1855778 + AluSx SINE Alu 1 293 -19 185 264 38 0 chr1 280338117 280338170 -1855494 + MIR3 SINE MIR 150 204 -4 4020 112 14 7 chr1 280338248 280338818 -1854846 - L1PB1 LINE L1 -1 6150 5577 1360 203 84 0 chr1 280339420 280339706 -1853958 - AluJo SINE Alu -2 310 1 215 316 0 11 chr1 280340466 280340561 -1853103 - MIR SINE MIR -138 124 31 359 254 141 49 chr1 280340768 280340910 -1852754 + MIR SINE MIR 35 189 -73 189 74 0 0 chr1 280340976 280341003 -1852661 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2243 116 0 3 chr1 280341058 280341368 -1852296 + AluSx SINE Alu 1 309 -3 287 284 49 10 chr1 280342149 280342251 -1851413 - MIR SINE MIR -72 136 31 400 308 50 13 chr1 280342270 280342429 -1851235 + MIR SINE MIR 24 188 -74 1950 162 0 3 chr1 280342442 280342751 -1850913 + AluJo SINE Alu 5 312 0 2051 111 35 0 chr1 280343556 280343845 -1849819 + AluSx SINE Alu 1 299 -13 805 237 132 27 chr1 280343851 280344146 -1849518 - MLT1J LTR MaLR -55 456 131 400 172 147 43 chr1 280344546 280344662 -1849002 - MLT1J LTR MaLR -383 128 1 1616 153 53 14 chr1 280344689 280344970 -1848694 + AluJb SINE Alu 11 302 -10 432 290 75 27 chr1 280345351 280345537 -1848127 - MIR SINE MIR -19 243 49 1282 169 5 0 chr1 280345537 280345765 -1847899 + AluJo SINE Alu 81 309 0 243 292 0 0 chr1 280346266 280346314 -1847350 + Alu SINE Alu 134 181 -118 510 229 21 0 chr1 280346314 280346440 -1847224 + FLAM_A SINE Alu 18 145 0 423 0 0 0 chr1 280346470 280346517 -1847147 + (CA)n Simple_repeat Simple_repeat 2 48 0 313 226 274 0 chr1 280346517 280346641 -1847023 - MLT1L LTR MaLR -435 180 23 914 209 154 67 chr1 280347421 280347961 -1845703 + L1MC4 LINE L1 7455 8041 -1 2550 60 0 0 chr1 280348458 280348760 -1844904 - AluY SINE Alu -9 302 1 737 160 0 17 chr1 280348766 280348885 -1844779 - FLAM_A SINE Alu -19 123 7 1055 270 29 47 chr1 280349081 280349465 -1844199 - LTR16A LTR ERVL -2 455 55 819 243 44 5 chr1 280349526 280349732 -1843932 - L1MC4 LINE L1 -362 7680 7467 596 313 91 42 chr1 280349977 280350335 -1843329 - HERV16 LTR ERVL -4450 546 160 2489 57 3 3 chr1 280350335 280350636 -1843028 - AluSq SINE Alu -12 301 1 596 313 91 42 chr1 280350636 280350727 -1842937 - HERV16 LTR ERVL -4836 160 75 3017 74 0 21 chr1 280350734 280351152 -1842512 + LTR7 LTR ERV1 40 448 -2 250 317 76 62 chr1 280351236 280351381 -1842283 + MIR SINE MIR 2 148 -114 2185 88 27 0 chr1 280351786 280352082 -1841582 + AluY SINE Alu 1 304 -7 24 0 0 0 chr1 280352222 280352246 -1841418 + AT_rich Low_complexity Low_complexity 1 24 0 836 154 0 0 chr1 280353280 280353397 -1840267 + FLAM_C SINE Alu 1 117 -16 180 0 0 0 chr1 280353410 280353430 -1840234 + (CAA)n Simple_repeat Simple_repeat 2 21 0 206 279 71 86 chr1 280353604 280353744 -1839920 - L2 LINE L2 -181 3091 2954 1987 128 10 26 chr1 280354372 280354678 -1838986 - AluSx SINE Alu -11 301 1 314 295 39 16 chr1 280354979 280355108 -1838556 + L2 LINE L2 3178 3309 -4 2353 240 102 15 chr1 280355332 280355389 -1838275 - L1M4 LINE L1 -1442 4704 4653 2259 86 3 0 chr1 280355389 280355402 -1838262 - AluSc SINE Alu -18 291 280 225 0 0 0 chr1 280355402 280355427 -1838237 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2259 86 3 0 chr1 280355427 280355703 -1837961 - AluSc SINE Alu -29 280 1 2353 240 102 15 chr1 280355703 280356371 -1837293 - L1M4 LINE L1 -1493 4653 3916 675 271 48 55 chr1 280356813 280356925 -1836739 - L2 LINE L2 0 3313 3202 1956 158 3 10 chr1 280356925 280357235 -1836429 - AluJb SINE Alu 0 312 5 675 271 48 55 chr1 280357235 280357395 -1836269 - L2 LINE L2 -111 3202 3043 1098 382 6 54 chr1 280357443 280357757 -1835907 + AluSg SINE Alu 2 300 0 415 239 218 7 chr1 280358113 280358255 -1835409 - MIR SINE MIR -59 203 32 183 80 0 0 chr1 280358576 280358601 -1835063 + (GA)n Simple_repeat Simple_repeat 2 26 0 1642 143 34 51 chr1 280358884 280359073 -1834591 - L1MA3 LINE L1 0 6305 6123 2388 93 3 0 chr1 280359073 280359383 -1834281 + AluSx SINE Alu 1 311 -1 1642 143 34 51 chr1 280359383 280359544 -1834120 - L1MA3 LINE L1 -182 6123 5961 1983 132 88 9 chr1 280359881 280360222 -1833442 - ERVL-D LTR ERVL -2468 3296 2929 400 152 0 33 chr1 280360521 280360613 -1833051 + GA-rich Low_complexity Low_complexity 2 90 0 3899 108 21 0 chr1 280360613 280361171 -1832493 - ERVL-D LTR ERVL -2821 2943 2374 1352 193 64 0 chr1 280361176 280361425 -1832239 - ERVL-D LTR ERVL -4953 811 547 1201 29 0 0 chr1 280361425 280361561 -1832103 + AluY SINE Alu 144 279 -32 1017 22 30 0 chr1 280361563 280361698 -1831966 + (TAAAA)n Simple_repeat Simple_repeat 2 140 0 552 230 0 65 chr1 280361774 280361874 -1831790 - ERVL-D LTR ERVL -5422 342 252 1703 185 3 13 chr1 280361874 280362188 -1831476 - AluY SINE Alu 0 311 1 552 230 0 65 chr1 280362188 280362226 -1831438 - ERVL-D LTR ERVL -5512 252 213 243 214 56 24 chr1 280362281 280362407 -1831257 + L1M4c LINE L1 2169 2298 -4086 265 247 0 0 chr1 280362478 280362535 -1831129 - MLT2D LTR ERVL 0 414 366 249 159 0 0 chr1 280362536 280362580 -1831084 + (CATATA)n Simple_repeat Simple_repeat 6 49 0 2137 169 111 23 chr1 280362580 280363012 -1830652 - MLT2B1 LTR ERVL -50 470 1 1622 218 118 33 chr1 280363064 280363694 -1829970 - L1M4c LINE L1 -3215 3429 2711 5025 183 124 76 chr1 280363696 280364183 -1829481 - L1M4c LINE L1 -4070 2576 2114 830 81 18 0 chr1 280364183 280364294 -1829370 - AluSg/x SINE Alu -9 303 191 1576 123 0 18 chr1 280364294 280364521 -1829143 - AluSq SINE Alu -88 225 3 5025 183 124 76 chr1 280364521 280365640 -1828024 - L1M4c LINE L1 -4532 2114 681 189 0 0 0 chr1 280365640 280365661 -1828003 + (CA)n Simple_repeat Simple_repeat 2 22 0 5025 183 124 76 chr1 280365661 280366369 -1827295 - L1M4c LINE L1 -5965 681 8 3290 195 144 24 chr1 280366377 280367759 -1825905 + L1MB7 LINE L1 4642 6174 -10 2400 70 0 19 chr1 280368339 280368652 -1825012 - AluY SINE Alu -4 307 1 2082 108 13 32 chr1 280368924 280369240 -1824424 - AluSx SINE Alu -2 310 1 731 246 119 51 chr1 280369257 280369610 -1824054 - L1MC/D LINE L1 -2175 5633 5257 181 95 24 24 chr1 280369674 280369716 -1823948 + (TA)n Simple_repeat Simple_repeat 1 42 0 332 271 55 39 chr1 280369814 280369995 -1823669 - L1MC/D LINE L1 -1299 4847 4664 4020 171 23 25 chr1 280370166 280370899 -1822765 + Tigger7 DNA MER2_type 1 732 -1755 2172 107 62 17 chr1 280370902 280371256 -1822408 + Tigger7 DNA MER2_type 2118 2487 0 1205 120 0 0 chr1 280371342 280371509 -1822155 + AluSg/x SINE Alu 141 307 -5 283 314 170 56 chr1 280371592 280371898 -1821766 + L2 LINE L2 2896 3236 -36 23 33 0 0 chr1 280372029 280372059 -1821605 + AT_rich Low_complexity Low_complexity 1 30 0 232 261 87 14 chr1 280373959 280374028 -1819636 + L3 LINE CR1 674 747 -830 23 0 0 0 chr1 280374244 280374267 -1819397 + AT_rich Low_complexity Low_complexity 1 23 0 2230 61 20 3 chr1 280374701 280374996 -1818668 + AluSg SINE Alu 1 300 -10 501 256 221 0 chr1 280375264 280375436 -1818228 - MER46C DNA MER2_type -1 337 128 2142 94 30 3 chr1 280375648 280375945 -1817719 - AluSx SINE Alu -7 305 1 475 291 58 35 chr1 280375971 280376168 -1817496 - MIR SINE MIR -41 221 25 281 225 0 38 chr1 280376189 280376269 -1817395 + MER113 DNA MER1_type? 46 122 -399 191 303 167 38 chr1 280377029 280377161 -1816503 - L2 LINE L2 -22 3250 3102 1894 132 20 7 chr1 280377174 280377469 -1816195 + AluSx SINE Alu 1 299 -13 546 237 15 22 chr1 280377470 280377605 -1816059 - MLT1F LTR MaLR -408 134 1 840 278 174 41 chr1 280377617 280378126 -1815538 - L2 LINE L2 -18 3295 2653 2265 86 0 3 chr1 280378126 280378428 -1815236 - AluSc SINE Alu -8 301 1 840 278 174 41 chr1 280378428 280378617 -1815047 - L2 LINE L2 -660 2653 2491 231 250 29 48 chr1 280378644 280378748 -1814916 - L2 LINE L2 -4 3309 3208 1546 174 17 7 chr1 280378760 280379047 -1814617 + AluJo SINE Alu 5 294 -18 619 267 53 49 chr1 280379113 280379467 -1814197 - L2 LINE L2 -212 3060 2710 1007 92 7 0 chr1 280379467 280379608 -1814056 + L1PB1 LINE L1 6009 6150 -1 619 267 53 49 chr1 280379608 280379679 -1813985 - L2 LINE L2 -562 2710 2641 1908 148 0 3 chr1 280379732 280380030 -1813634 - AluJb SINE Alu -15 297 1 720 171 57 74 chr1 280380040 280380215 -1813449 + MER5B DNA MER1_type 7 178 0 2084 97 31 0 chr1 280380429 280380719 -1812945 - AluSx SINE Alu -13 299 1 187 306 0 0 chr1 280380892 280380908 -1812756 - L2 LINE L2 0 3313 3265 191 182 0 0 chr1 280380908 280380941 -1812723 - MIR SINE MIR -10 252 220 339 240 137 41 chr1 280381107 280381253 -1812411 + MIR SINE MIR 103 262 0 1813 106 80 7 chr1 280381408 280381530 -1812134 + AluSx SINE Alu 1 113 -199 333 0 0 0 chr1 280381530 280381567 -1812097 + (CA)n Simple_repeat Simple_repeat 2 38 0 1813 106 80 7 chr1 280381567 280381719 -1811945 + AluSx SINE Alu 113 295 -17 181 323 111 10 chr1 280382353 280382452 -1811212 + MIR SINE MIR 7 115 -147 2065 89 21 0 chr1 280382550 280382841 -1810823 + AluSx SINE Alu 1 297 -15 305 316 8 26 chr1 280383026 280383143 -1810521 + MIR SINE MIR 7 121 -141 236 285 290 0 chr1 280383194 280383408 -1810256 - L2 LINE L2 -612 2702 2427 810 74 0 0 chr1 280383447 280383555 -1810109 - AluSp/q SINE Alu -4 309 202 1792 124 4 4 chr1 280383658 280383931 -1809733 + AluSg SINE Alu 30 302 -8 874 144 8 0 chr1 280383997 280384129 -1809535 + FLAM_C SINE Alu 1 133 0 1788 162 0 22 chr1 280384142 280384457 -1809207 + AluSx SINE Alu 1 308 -4 1961 132 7 3 chr1 280384503 280384798 -1808866 + AluSx SINE Alu 1 296 -16 315 219 24 37 chr1 280384798 280384872 -1808792 + L1MCa LINE L1 2001 2075 -4351 1121 281 52 14 chr1 280385353 280385764 -1807900 + LTR16A LTR ERVL 4 457 0 348 240 48 40 chr1 280385764 280385889 -1807775 + HERV16 LTR ERVL 1 126 -4870 2183 281 78 23 chr1 280385980 280386728 -1806936 + HERV16 LTR ERVL 376 1164 -3832 483 255 103 26 chr1 280387499 280387809 -1805855 + L1ME LINE L1 540 873 -5197 258 303 68 15 chr1 280387840 280387972 -1805692 - ERVL LTR ERVL -702 5062 4924 521 308 158 18 chr1 280388163 280388442 -1805222 + LTR16A LTR ERVL 133 450 0 1979 122 0 13 chr1 280389708 280390011 -1803653 - AluJb SINE Alu -11 301 3 584 289 58 21 chr1 280390443 280390685 -1802979 - MIR SINE MIR 0 262 12 525 174 41 0 chr1 280391382 280391480 -1802184 + AluSg/x SINE Alu 195 296 -13 2179 86 7 3 chr1 280392160 280392463 -1801201 - AluY SINE Alu -7 304 1 22 70 0 0 chr1 280392466 280392509 -1801155 + AT_rich Low_complexity Low_complexity 1 43 0 2482 150 76 2 chr1 280392948 280393304 -1800360 - LTR47A LTR ERVL 0 452 59 2687 96 6 3 chr1 280393304 280393667 -1799997 + THE1B LTR MaLR 1 364 0 2482 150 76 2 chr1 280393667 280393731 -1799933 - LTR47A LTR ERVL -393 59 1 1457 172 47 10 chr1 280394225 280394522 -1799142 - AluJo SINE Alu -4 308 1 2259 105 0 0 chr1 280394656 280394960 -1798704 + AluSx SINE Alu 1 304 -8 387 286 216 25 chr1 280395137 280395539 -1798125 - L2 LINE L2 -337 2977 2499 1927 131 7 0 chr1 280396004 280396317 -1797347 - AluSx SINE Alu 0 315 1 579 243 209 0 chr1 280396363 280396540 -1797124 - MIR SINE MIR 0 262 49 2045 89 3 7 chr1 280396937 280397228 -1796436 + AluSc SINE Alu 1 290 -19 944 204 84 42 chr1 280397498 280397783 -1795881 - LTR9 LTR ERV1 0 612 316 1529 188 31 95 chr1 280397794 280398214 -1795450 - LTR9 LTR ERV1 -219 393 1 277 247 41 0 chr1 280398256 280398329 -1795335 - MIR SINE MIR -70 192 117 261 268 79 71 chr1 280398361 280398488 -1795176 + MIR SINE MIR 2 129 -133 291 289 99 41 chr1 280398541 280398662 -1795002 + L2 LINE L2 3140 3267 -5 354 304 61 55 chr1 280398835 280399016 -1794648 + MIR SINE MIR 25 206 -56 319 288 36 18 chr1 280400303 280400414 -1793250 + L2 LINE L2 3159 3271 -1 2277 70 0 0 chr1 280400503 280400788 -1792876 - AluY SINE Alu -13 298 14 212 361 49 0 chr1 280401008 280401130 -1792534 + L2 LINE L2 2522 2649 -665 852 151 0 0 chr1 280401157 280401283 -1792381 + FLAM_C SINE Alu 1 126 -7 820 160 92 34 chr1 280401356 280401391 -1792273 + AluJo SINE Alu 87 119 -193 225 0 0 0 chr1 280401391 280401416 -1792248 + (TA)n Simple_repeat Simple_repeat 2 26 0 820 160 92 34 chr1 280401416 280401586 -1792078 + AluJo SINE Alu 119 304 -8 443 202 39 23 chr1 280401620 280401749 -1791915 - MER20B DNA MER1_type 0 783 653 2188 106 3 0 chr1 280401945 280402256 -1791408 + AluSx SINE Alu 1 312 0 21 0 0 0 chr1 280402632 280402653 -1791011 + AT_rich Low_complexity Low_complexity 1 21 0 2151 119 0 3 chr1 280402701 280403011 -1790653 - AluSx SINE Alu -3 309 1 205 214 18 0 chr1 280403053 280403109 -1790555 + T-rich Low_complexity Low_complexity 4 60 0 403 192 55 0 chr1 280403323 280403396 -1790268 - MER21B LTR ERV1 -767 96 20 1859 149 0 7 chr1 280403792 280404080 -1789584 - AluSx SINE Alu -26 286 1 308 103 88 29 chr1 280404754 280404822 -1788842 - L1MB8 LINE L1 0 6178 6107 2130 83 10 0 chr1 280404931 280405221 -1788443 - AluSq SINE Alu -20 293 1 2289 57 17 10 chr1 280405233 280405534 -1788130 - AluY SINE Alu -8 303 1 275 337 43 6 chr1 280405536 280405699 -1787965 - L1ME LINE L1 -295 5826 5658 1631 145 48 3 chr1 280405930 280406220 -1787444 - AluJb SINE Alu -9 303 1 2213 53 4 4 chr1 280407023 280407347 -1786317 - AluY SINE Alu 0 324 1 1362 152 112 25 chr1 280407347 280407623 -1786041 - AluJo SINE Alu -10 302 3 776 109 0 0 chr1 280407818 280407919 -1785745 + AluS SINE Alu 2 102 -210 3389 127 3 64 chr1 280408357 280408487 -1785177 + L1MA4 LINE L1 5198 5334 -966 2011 108 10 3 chr1 280408487 280408775 -1784889 + AluSq SINE Alu 1 290 -23 3389 127 3 64 chr1 280408775 280408873 -1784791 + L1MA4 LINE L1 5334 5436 -864 2157 73 3 3 chr1 280408873 280409162 -1784502 + AluSc SINE Alu 1 289 -20 3389 127 3 64 chr1 280409162 280409554 -1784110 + L1MA4 LINE L1 5436 5785 -515 405 0 0 0 chr1 280409554 280409599 -1784065 + (CA)n Simple_repeat Simple_repeat 2 46 0 3389 127 3 64 chr1 280409599 280409642 -1784022 + L1MA4 LINE L1 5785 5829 -471 1938 115 4 4 chr1 280409642 280409921 -1783743 + AluSx SINE Alu 1 279 -33 1602 76 0 5 chr1 280410021 280410232 -1783432 - AluSq SINE Alu -103 210 1 21 89 0 0 chr1 280410267 280410323 -1783341 + AT_rich Low_complexity Low_complexity 1 56 0 378 271 96 115 chr1 280411461 280411845 -1781819 + HAL1 LINE L1 475 851 -1656 244 123 105 0 chr1 280411851 280411908 -1781756 - MLT2B1 LTR ERVL -10 510 448 295 108 116 0 chr1 280411908 280412037 -1781627 + (TA)n Simple_repeat Simple_repeat 2 145 0 2786 199 2 2 chr1 280412037 280412514 -1781150 - MLT2B1 LTR ERVL -41 479 3 1723 172 0 7 chr1 280412514 280412816 -1780848 + AluJb SINE Alu 1 300 -12 10205 136 74 28 chr1 280412821 280413183 -1780481 - ERVL-B1 LTR ERVL 0 5764 5420 2137 107 0 0 chr1 280413183 280413474 -1780190 + AluSx SINE Alu 1 291 -21 10205 136 74 28 chr1 280413474 280414727 -1778937 - ERVL-B1 LTR ERVL -344 5420 4061 1497 173 58 4 chr1 280414727 280414848 -1778816 + AluJo SINE Alu 1 114 -198 198 0 0 0 chr1 280414848 280414870 -1778794 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1497 173 58 4 chr1 280414870 280415025 -1778639 + AluJo SINE Alu 114 292 -20 10205 136 74 28 chr1 280415025 280415141 -1778523 - ERVL-B1 LTR ERVL -1703 4061 3952 2079 110 14 0 chr1 280415165 280415457 -1778207 + AluSx SINE Alu 1 296 -16 823 137 0 0 chr1 280415464 280415581 -1778083 - FLAM_C SINE Alu -26 117 1 3702 158 51 14 chr1 280415582 280416245 -1777419 - ERVL-B1 LTR ERVL -1796 3968 3281 192 125 0 0 chr1 280416255 280416287 -1777377 + (T)n Simple_repeat Simple_repeat 1 32 0 194 296 0 14 chr1 280417833 280417904 -1775760 + MIR SINE MIR 65 134 -74 2021 132 88 9 chr1 280418142 280418483 -1775181 - ERVL LTR ERVL -2468 3296 2929 763 200 0 46 chr1 280418798 280418973 -1774691 - L1P LINE L1 -1156 4990 4824 857 193 82 34 chr1 280419140 280419207 -1774457 + AluJo SINE Alu 74 136 -176 2129 95 3 0 chr1 280419207 280419520 -1774144 + AluSp SINE Alu 1 314 0 857 193 82 34 chr1 280419520 280419658 -1774006 + AluJo SINE Alu 136 290 -22 458 297 36 16 chr1 280420291 280420483 -1773181 + L1ME4a LINE L1 5678 5873 -248 1296 201 64 0 chr1 280420608 280420857 -1772807 - ERVL LTR ERVL -4953 811 547 1156 29 0 0 chr1 280420857 280420993 -1772671 + AluY SINE Alu 144 279 -32 1017 22 30 0 chr1 280420995 280421130 -1772534 + (TAAAA)n Simple_repeat Simple_repeat 2 140 0 548 232 251 43 chr1 280421206 280421306 -1772358 - ERVL LTR ERVL -5422 342 264 1875 137 3 13 chr1 280421306 280421620 -1772044 - AluY SINE Alu 0 311 1 548 232 251 43 chr1 280421620 280421730 -1771934 - ERVL LTR ERVL -5500 264 88 2139 101 7 7 chr1 280622293 280622590 -1571074 + AluSx SINE Alu 1 297 -15 534 268 169 13 chr1 280622594 280622907 -1570757 - MLT1C LTR MaLR -105 362 1 1932 207 150 145 chr1 280622907 280623008 -1570656 - L1M4 LINE L1 -1275 4871 4772 2194 118 3 0 chr1 280623008 280623313 -1570351 + AluSq SINE Alu 1 306 -7 1932 207 150 145 chr1 280623313 280623782 -1569882 - L1M4 LINE L1 -1374 4772 4307 732 219 0 0 chr1 280623782 280623919 -1569745 - FAM SINE Alu -4 45 1 1932 207 150 145 chr1 280623919 280623974 -1569690 - L1M4 LINE L1 -1839 4307 4254 2245 102 3 40 chr1 280623974 280624296 -1569368 - AluSx SINE Alu -2 310 1 1692 145 59 14 chr1 280624296 280624585 -1569079 - AluSx SINE Alu -10 302 1 1932 207 150 145 chr1 280624585 280625353 -1568311 - L1M4 LINE L1 -1891 4255 3331 539 154 11 0 chr1 280625367 280625458 -1568206 - AluJ/FLAM SINE Alu -215 97 6 642 241 71 12 chr1 280625505 280625758 -1567906 - L1M4 LINE L1 -2910 3236 2969 795 178 8 0 chr1 280628701 280628830 -1564834 - FLAM_A SINE Alu 0 133 4 2525 73 0 0 chr1 280629961 280630261 -1563403 + AluY SINE Alu 1 300 -11 420 284 77 29 chr1 280630263 280630471 -1563193 + L1MC/D LINE L1 5603 5820 -1988 2706 89 129 5 chr1 280630616 280631011 -1562653 - LTR7 LTR ERV1 -2 448 5 197 296 130 61 chr1 280631058 280631173 -1562491 - L2 LINE L2 -7 3306 3184 1502 160 65 68 chr1 280631750 280632057 -1561607 - AluJo SINE Alu -6 306 1 405 244 155 12 chr1 280632357 280632525 -1561139 - MIR3 SINE MIR 0 208 17 2205 84 0 11 chr1 280632730 280633034 -1560630 - AluSx SINE Alu 0 301 1 223 293 236 16 chr1 280633496 280633619 -1560045 - L2 LINE L2 -7 3265 3116 23 33 0 0 chr1 280633636 280633666 -1559998 + AT_rich Low_complexity Low_complexity 1 30 0 2184 109 3 3 chr1 280633674 280633968 -1559696 + AluSx SINE Alu 1 294 -18 1183 213 4 8 chr1 280634178 280634413 -1559251 + AluJo SINE Alu 63 296 -16 2969 199 166 10 chr1 280634417 280635474 -1558190 + L1MB8 LINE L1 4966 6333 -1 221 208 218 40 chr1 280635503 280635604 -1558060 - MIR SINE MIR -34 228 110 1595 124 176 0 chr1 280635628 280635878 -1557786 - AluSg SINE Alu -15 295 2 333 250 281 0 chr1 280635948 280636144 -1557520 - L2 LINE L2 -469 2845 2595 1324 199 129 3 chr1 280636157 280636459 -1557205 + Tigger7 DNA MER2_type 1 340 -2147 614 195 55 16 chr1 280636459 280636587 -1557077 + Tigger7 DNA MER2_type 2441 2573 -14 561 197 161 55 chr1 280638953 280639171 -1554493 + MIR SINE MIR 22 262 0 236 33 0 0 chr1 280639290 280639320 -1554344 - L1MA1 LINE L1 -6 6296 6267 236 33 0 0 chr1 280639328 280639358 -1554306 - L1MA1 LINE L1 -6 6296 6267 229 67 0 0 chr1 280639366 280639396 -1554268 - L1MA3 LINE L1 -7 6298 6269 236 33 0 0 chr1 280639404 280639434 -1554230 - L1MA2 LINE L1 -6 6298 6269 343 240 126 63 chr1 280639871 280640046 -1553618 + MER63A DNA MER1_type 23 208 -2 232 335 67 30 chr1 280640051 280640215 -1553449 + MIR SINE MIR 72 241 -21 360 245 90 32 chr1 280640499 280640650 -1553014 - MIR SINE MIR -64 144 30 239 292 33 25 chr1 280640663 280640783 -1552881 + L1ME LINE L1 5702 5822 -340 192 77 0 0 chr1 280640805 280640831 -1552833 + (CATATA)n Simple_repeat Simple_repeat 4 29 0 1055 141 40 45 chr1 280640858 280641056 -1552608 - AluJb SINE Alu -32 280 84 2305 102 0 16 chr1 280641088 280641402 -1552262 + AluSx SINE Alu 1 309 -3 3978 266 103 28 chr1 280642599 280642643 -1551021 + L1M4 LINE L1 117 156 -6703 2185 112 7 0 chr1 280642643 280642939 -1550725 + AluSx SINE Alu 1 298 -14 3978 266 103 28 chr1 280642939 280644235 -1549429 + L1M4 LINE L1 156 1558 -5301 358 242 77 0 chr1 280644218 280644370 -1549294 + L1M4 LINE L1 4143 4304 -2653 * 2338 68 0 16 chr1 280644373 280644680 -1548984 + AluY SINE Alu 1 302 -9 1528 180 14 27 chr1 280644682 280644977 -1548687 + AluSx SINE Alu 1 291 -11 2245 78 11 0 chr1 280645203 280645486 -1548178 + AluSc SINE Alu 1 286 -23 24 0 0 0 chr1 280645486 280645510 -1548154 + AT_rich Low_complexity Low_complexity 1 24 0 2308 45 56 7 chr1 280645516 280645804 -1547860 + AluY SINE Alu 1 302 -9 186 379 114 0 chr1 280646376 280646516 -1547148 - L2 LINE L2 -14 3258 3103 2214 115 3 3 chr1 280646607 280646919 -1546745 + AluSx SINE Alu 1 312 0 1768 58 0 0 chr1 280647258 280647465 -1546199 + AluSg SINE Alu 1 207 -103 2364 100 7 0 chr1 280647960 280648261 -1545403 - AluSx SINE Alu -9 303 1 768 171 8 0 chr1 280649232 280649355 -1544309 + AluJb SINE Alu 2 125 -187 2205 104 3 0 chr1 280649362 280649651 -1544013 + AluSx SINE Alu 1 290 -22 1881 130 10 17 chr1 280650145 280650445 -1543219 - AluSx SINE Alu -14 298 1 337 344 33 33 chr1 280651553 280651733 -1541931 - HERVS71 LTR ERV1 -3935 5043 4864 40 37 0 0 chr1 280651988 280652042 -1541622 + AT_rich Low_complexity Low_complexity 1 54 0 510 335 64 46 chr1 280653339 280653820 -1539844 - HERVS71 LTR ERV1 -1906 5850 4683 23 0 0 0 chr1 280654250 280654273 -1539391 + AT_rich Low_complexity Low_complexity 1 23 0 322 336 65 50 chr1 280654513 280655114 -1538550 - HERVS71 LTR ERV1 -3138 5042 3515 4521 141 44 15 chr1 280655560 280655668 -1537996 - Tigger1 DNA MER2_type -567 1851 1748 1467 178 76 7 chr1 280655668 280655944 -1537720 - AluJo SINE Alu -17 295 1 4521 141 44 15 chr1 280655944 280656625 -1537039 - Tigger1 DNA MER2_type -670 1748 1039 843 157 58 13 chr1 280656624 280656882 -1536782 - Tigger1 DNA MER2_type -1781 637 310 * 652 213 0 28 chr1 280656867 280656963 -1536701 - Tigger1 DNA MER2_type -2281 137 45 * 2520 59 3 0 chr1 280656963 280657266 -1536398 + AluY SINE Alu 1 304 -7 652 213 0 28 chr1 280657266 280657310 -1536354 - Tigger1 DNA MER2_type -2373 45 1 1959 105 14 14 chr1 280657553 280657686 -1535978 + AluSx SINE Alu 1 133 -179 2173 93 31 3 chr1 280657686 280657977 -1535687 + AluSx SINE Alu 2 300 -12 1959 105 14 14 chr1 280657977 280658137 -1535527 + AluSx SINE Alu 132 294 -18 30 0 0 0 chr1 280658137 280658167 -1535497 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr1 280658185 280658205 -1535459 + (TG)n Simple_repeat Simple_repeat 1 20 0 25 83 0 0 chr1 280658919 280658979 -1534685 + AT_rich Low_complexity Low_complexity 1 60 0 220 158 0 0 chr1 280661390 280661428 -1532236 + MIR SINE MIR 218 255 -7 2395 58 3 3 chr1 280663320 280663614 -1530050 - AluY SINE Alu -17 294 1 388 396 28 11 chr1 280663985 280664167 -1529497 - MIR3 SINE MIR -5 203 19 506 173 0 23 chr1 280665006 280665253 -1528411 + AluJo SINE Alu 1 291 -21 2215 84 0 32 chr1 280665525 280665833 -1527831 - AluSg SINE Alu -12 298 1 1369 94 17 0 chr1 280666043 280666224 -1527440 - AluSg SINE Alu -126 184 1 309 296 204 33 chr1 280666286 280666438 -1527226 + MIR SINE MIR 48 225 -37 2423 70 0 0 chr1 280666514 280666815 -1526849 + AluY SINE Alu 1 301 -10 2195 114 3 3 chr1 280669470 280669777 -1523887 + AluSx SINE Alu 1 307 -5 2477 74 3 3 chr1 280670115 280670426 -1523238 + AluY SINE Alu 1 311 0 630 130 90 0 chr1 280670439 280670539 -1523125 - FLAM_C SINE Alu -33 110 2 331 306 167 3 chr1 280670555 280670872 -1522792 + L1M4 LINE L1 2738 3106 -3040 330 336 8 8 chr1 280671134 280671262 -1522402 - MIR SINE MIR -130 132 5 1031 234 0 0 chr1 280673428 280673603 -1520061 + MER8 DNA MER2_type 1 175 -64 270 301 41 0 chr1 280674072 280674145 -1519519 - MER2 DNA MER2_type -1 344 269 858 160 0 8 chr1 280674148 280674279 -1519385 + FLAM_C SINE Alu 1 130 -3 2194 130 0 0 chr1 280674298 280674599 -1519065 + AluSx SINE Alu 7 307 -5 524 65 26 0 chr1 280674632 280674709 -1518955 - MER2 DNA MER2_type -135 210 132 1144 160 41 0 chr1 280674715 280674909 -1518755 + MER2 DNA MER2_type 141 342 -3 741 168 38 30 chr1 280674911 280675042 -1518622 - MER2 DNA MER2_type -213 132 1 1646 160 85 3 chr1 280675721 280676027 -1517637 + MER7A DNA MER2_type 18 346 0 2008 141 0 13 chr1 280676387 280676691 -1516973 - AluSg SINE Alu -10 300 1 2158 102 3 0 chr1 280677465 280677771 -1515893 - AluSg SINE Alu 0 307 1 296 253 50 10 chr1 280678082 280678181 -1515483 - L2 LINE L2 -1209 2105 2003 205 326 0 0 chr1 280678227 280678270 -1515394 - MIR SINE MIR -203 59 17 384 276 100 84 chr1 280678465 280678715 -1514949 - MLT1J LTR MaLR -257 254 1 2277 81 0 35 chr1 280679131 280679441 -1514223 - AluSg1 SINE Alu -10 299 1 192 235 118 0 chr1 280679541 280679592 -1514072 + MIR3 SINE MIR 104 160 -48 236 229 0 0 chr1 280680033 280680081 -1513583 - L1ME LINE L1 -597 5565 5518 396 260 71 0 chr1 280680880 280681007 -1512657 + MIR SINE MIR 54 189 -73 956 197 0 53 chr1 280681138 280681346 -1512318 - AluJb SINE Alu -8 304 108 201 39 0 0 chr1 280681346 280681372 -1512292 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1908 88 84 0 chr1 280681372 280681634 -1512030 - AluY SINE Alu -27 284 1 1873 142 10 7 chr1 280681636 280681931 -1511733 - AluJb SINE Alu -16 296 1 518 210 182 14 chr1 280682094 280682237 -1511427 + MER105 DNA DNA 2 168 -36 2227 105 0 3 chr1 280683887 280684183 -1509481 - AluSq SINE Alu -18 295 1 387 0 0 0 chr1 280684324 280684367 -1509297 + (TG)n Simple_repeat Simple_repeat 2 44 0 1421 198 12 4 chr1 280685032 280685290 -1508374 - AluJo SINE Alu -52 260 1 915 132 113 0 chr1 280685290 280685449 -1508215 + Tigger3(Golem) DNA MER2_type 2760 2936 -93 388 74 0 0 chr1 280685552 280685606 -1508058 - LTR13 LTR ERVK -953 54 1 834 80 0 140 chr1 280685606 280685756 -1507908 - AluSx SINE Alu -157 155 27 2198 95 7 0 chr1 280686278 280686563 -1507101 - AluSg SINE Alu -22 288 2 180 0 0 0 chr1 280686782 280686802 -1506862 + (TA)n Simple_repeat Simple_repeat 2 21 0 2366 70 3 0 chr1 280686802 280687087 -1506577 - AluSp SINE Alu -27 286 1 462 324 93 10 chr1 280687391 280687595 -1506069 - MIR SINE MIR -37 225 5 23 68 0 0 chr1 280687744 280687788 -1505876 + AT_rich Low_complexity Low_complexity 1 44 0 219 140 0 0 chr1 280687881 280687931 -1505733 + (A)n Simple_repeat Simple_repeat 1 50 0 418 229 8 34 chr1 280688200 280688318 -1505346 + L1MB1 LINE L1 6054 6168 0 412 334 121 25 chr1 280688548 280688985 -1504679 + L2 LINE L2 2835 3313 0 2481 36 0 0 chr1 280690248 280690555 -1503109 + AluY SINE Alu 1 307 0 344 120 0 0 chr1 280690692 280690742 -1502922 - MSTA LTR MaLR -378 50 1 229 294 47 0 chr1 280690776 280690861 -1502803 - L3 LINE CR1 -846 731 643 602 191 63 79 chr1 280690947 280690994 -1502670 - MER65B LTR ERV1 -345 186 140 2018 116 20 3 chr1 280690994 280691286 -1502378 - AluSg SINE Alu -12 298 2 602 191 63 79 chr1 280691286 280691427 -1502237 - MER65B LTR ERV1 -391 140 1 314 250 57 0 chr1 280692222 280692310 -1501354 - LTR16C LTR ERVL -51 440 348 370 280 133 0 chr1 280692456 280692606 -1501058 - MER5A DNA MER1_type -18 171 2 2449 63 3 29 chr1 280693624 280693940 -1499724 + AluY SINE Alu 1 308 -3 396 219 0 101 chr1 280694112 280694153 -1499511 - L1MB4 LINE L1 -9 6171 6127 2031 140 0 3 chr1 280694153 280694453 -1499211 - AluSx SINE Alu -13 299 1 396 219 0 101 chr1 280694453 280694530 -1499134 - L1MB4 LINE L1 -53 6127 6065 * 1664 225 77 3 chr1 280694528 280695164 -1498500 + L1M2 LINE L1 5020 5694 -606 2243 100 3 0 chr1 280695721 280696021 -1497643 + AluSp SINE Alu 1 301 -12 627 78 0 0 chr1 280696442 280696519 -1497145 + Alu SINE Alu 2 78 -233 281 269 21 21 chr1 280696519 280696660 -1497004 - L1M4 LINE L1 -1639 4507 4367 2432 73 0 3 chr1 280696672 280696972 -1496692 + AluY SINE Alu 1 299 -12 1202 213 0 20 chr1 280696984 280697228 -1496436 + AluJo SINE Alu 1 239 -73 2033 131 3 0 chr1 280697287 280697592 -1496072 + AluSx SINE Alu 1 306 0 1645 190 23 0 chr1 280697627 280697932 -1495732 + AluJb SINE Alu 1 312 0 1968 146 0 0 chr1 280698164 280698451 -1495213 + AluJb SINE Alu 1 287 -25 300 196 130 22 chr1 280698497 280698589 -1495075 - L2 LINE L2 -181 3132 3031 1713 202 130 7 chr1 280698800 280699216 -1494448 - MLT1C LTR MaLR 0 467 1 614 245 27 7 chr1 280699523 280699670 -1493994 - MIR SINE MIR -54 208 59 2296 116 0 3 chr1 280699735 280700045 -1493619 - AluSx SINE Alu -3 309 1 2153 134 0 0 chr1 280700799 280701105 -1492559 - AluSx SINE Alu -6 306 1 444 340 7 0 chr1 280701415 280701562 -1492102 - MIR SINE MIR -6 256 109 277 256 124 31 chr1 280701717 280701846 -1491818 - MIR SINE MIR -6 256 116 2220 132 0 0 chr1 280702040 280702344 -1491320 + AluSx SINE Alu 1 304 -8 815 214 0 71 chr1 280703028 280703210 -1490454 + FAM SINE Alu 1 169 -6 297 257 29 0 chr1 280703653 280703723 -1489941 - L1ME3A LINE L1 -88 6082 6011 304 190 70 95 chr1 280703822 280703882 -1489782 - L1ME3A LINE L1 -219 5951 5891 1993 139 0 19 chr1 280703882 280704199 -1489465 - AluSq SINE Alu 0 313 3 304 190 70 95 chr1 280704199 280704219 -1489445 - L1ME3A LINE L1 -279 5891 5872 2476 61 3 0 chr1 280704219 280704515 -1489149 - AluY SINE Alu -14 297 1 304 190 70 95 chr1 280704515 280704591 -1489073 - L1ME3A LINE L1 -298 5872 5798 295 260 167 62 chr1 280704595 280704833 -1488831 - L1MEd LINE L1 -5157 962 750 2064 106 19 26 chr1 280704833 280705144 -1488520 - AluSc SINE Alu 0 309 1 295 260 167 62 chr1 280705144 280705288 -1488376 - L1MEd LINE L1 -5364 755 538 2163 94 31 7 chr1 280705288 280705576 -1488088 - AluSc SINE Alu -14 295 1 893 160 11 40 chr1 280706331 280706506 -1487158 - AluJo SINE Alu -21 291 122 408 272 165 69 chr1 280707650 280707996 -1485668 + L2 LINE L2 2402 2780 -534 237 277 108 12 chr1 280708148 280708231 -1485433 + MIR SINE MIR 12 102 -160 695 122 0 0 chr1 280708350 280708440 -1485224 - AluY SINE Alu -27 284 195 328 283 9 9 chr1 280708915 280709021 -1484643 + L1ME3A LINE L1 6065 6170 0 201 349 15 15 chr1 280709317 280709383 -1484281 - L2 LINE L2 -70 3202 3137 2318 85 7 0 chr1 280709663 280709957 -1483707 - AluSc SINE Alu -13 296 1 257 386 46 0 chr1 280710041 280710194 -1483470 - L2 LINE L2 -685 2629 2470 431 147 29 0 chr1 280710675 280710743 -1482921 - Tigger4(Zombi) DNA MER2_type 0 2731 2662 297 246 120 49 chr1 280711239 280711381 -1482283 + MIR SINE MIR 109 260 -2 587 125 10 0 chr1 280712186 280712282 -1481382 + AluSg/x SINE Alu 207 303 -9 2430 85 3 3 chr1 280712430 280712737 -1480927 + AluSp SINE Alu 1 307 -6 315 181 129 17 chr1 280713581 280713697 -1479967 - L1MC4 LINE L1 0 8042 7914 227 247 152 76 chr1 280713762 280714118 -1479546 - L1MC5 LINE L1 -286 7675 7293 * 248 279 67 0 chr1 280714091 280714195 -1479469 - L1MC4a LINE L1 -397 7411 7301 716 224 64 6 chr1 280714258 280714414 -1479250 + MER20 DNA MER1_type 2 166 -53 2036 167 131 9 chr1 280714416 280714793 -1478871 - Tigger7 DNA MER2_type -2 2485 2156 1917 109 75 27 chr1 280714793 280715086 -1478578 - AluSg SINE Alu -3 307 1 348 111 0 0 chr1 280715093 280715156 -1478508 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2036 167 131 9 chr1 280715156 280715247 -1478417 - Tigger7 DNA MER2_type -336 2151 1 2232 86 0 35 chr1 280715300 280715614 -1478050 - AluY SINE Alu -8 303 1 226 226 19 0 chr1 280715617 280715670 -1477994 - L1MC5 LINE L1 -748 7213 7160 507 228 59 41 chr1 280715857 280716120 -1477544 - L1MC5 LINE L1 -936 7106 6742 22 0 0 0 chr1 280716231 280716253 -1477411 + AT_rich Low_complexity Low_complexity 1 22 0 862 99 0 0 chr1 280716897 280717008 -1476656 - FLAM_C SINE Alu -32 111 1 353 259 163 86 chr1 280717659 280717774 -1475890 + L1M2 LINE L1 444 549 -6300 252 0 0 0 chr1 280717774 280717802 -1475862 + (CCG)n Simple_repeat Simple_repeat 3 30 0 353 259 163 86 chr1 280717802 280718204 -1475460 + L1M2 LINE L1 549 948 -5901 24 32 0 0 chr1 280718529 280718560 -1475104 + GC_rich Low_complexity Low_complexity 1 31 0 679 117 10 0 chr1 280718742 280718845 -1474819 - AluSg/x SINE Alu -2 307 204 1816 136 13 33 chr1 280719230 280719397 -1474267 - AluJo SINE Alu -17 295 126 254 49 0 24 chr1 280719397 280719438 -1474226 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2321 75 0 0 chr1 280719438 280719717 -1473947 - AluSc SINE Alu -30 279 1 1816 136 13 33 chr1 280719717 280719849 -1473815 - AluJo SINE Alu -184 128 1 955 153 11 40 chr1 280719851 280720027 -1473637 - FAM SINE Alu -4 171 1 438 250 0 119 chr1 280720350 280720526 -1473138 + MIR3 SINE MIR 38 192 -16 1974 159 3 0 chr1 280720637 280720939 -1472725 - AluJb SINE Alu -9 303 1 207 0 0 0 chr1 280721007 280721030 -1472634 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 261 189 89 22 chr1 280721484 280721574 -1472090 + MER103 DNA DNA 8 103 -63 388 305 68 42 chr1 280721690 280721880 -1471784 + MIR SINE MIR 8 202 -60 407 74 19 0 chr1 280722051 280722105 -1471559 - MER34C LTR ERV1 -484 101 47 24 0 0 0 chr1 280722117 280722141 -1471523 + AT_rich Low_complexity Low_complexity 1 24 0 2143 98 0 51 chr1 280722141 280722457 -1471207 - AluSx SINE Alu -12 300 1 2643 46 0 0 chr1 280722747 280723051 -1470613 + AluY SINE Alu 1 304 -7 45 45 0 0 chr1 280723051 280723117 -1470547 + AT_rich Low_complexity Low_complexity 1 66 0 1506 108 33 0 chr1 280723451 280723663 -1470001 - AluSx SINE Alu -93 219 1 196 430 16 0 chr1 280723898 280724019 -1469645 + L2 LINE L2 3114 3236 -36 265 246 15 0 chr1 280724110 280724175 -1469489 - MIR3 SINE MIR -18 190 125 1997 147 3 6 chr1 280724238 280724550 -1469114 + AluJb SINE Alu 1 311 -1 582 151 11 0 chr1 280724551 280724644 -1469020 - MER34 LTR ERV1 0 542 449 606 178 0 54 chr1 280724644 280724773 -1468891 + FRAM SINE Alu 1 122 -54 235 147 0 0 chr1 280726333 280726367 -1467297 - Alu SINE Alu -134 169 136 2224 109 0 0 chr1 280726370 280726680 -1466984 - AluSx SINE Alu 0 310 1 2057 124 0 27 chr1 280726682 280726981 -1466683 - AluSc SINE Alu -18 291 1 2435 77 0 23 chr1 280726982 280727292 -1466372 - AluSg SINE Alu -7 303 1 23 54 0 0 chr1 280727359 280727396 -1466268 + AT_rich Low_complexity Low_complexity 1 37 0 252 136 288 15 chr1 280728805 280728871 -1464793 + L2 LINE L2 3228 3311 -2 1079 162 0 0 chr1 280728892 280729059 -1464605 - FRAM SINE Alu -4 172 6 833 131 0 62 chr1 280729150 280729280 -1464384 + FLAM_C SINE Alu 1 122 -21 2090 99 0 20 chr1 280729691 280729993 -1463671 + AluSc SINE Alu 12 307 -2 1960 134 10 19 chr1 280729995 280730336 -1463328 + AluSx SINE Alu 1 312 0 278 188 16 16 chr1 280731031 280731095 -1462569 + MIR3 SINE MIR 130 193 -15 1298 148 110 26 chr1 280731204 280731286 -1462378 - MER7A DNA MER2_type -2754 284 210 2036 96 126 36 chr1 280731286 280731620 -1462044 + THE1B LTR MaLR 1 364 0 1298 148 110 26 chr1 280731620 280731801 -1461863 - MER7A DNA MER2_type -2828 210 1 1291 121 0 6 chr1 280732340 280732522 -1461142 - AluSg/x SINE Alu -9 300 120 189 0 0 0 chr1 280732680 280732701 -1460963 + (A)n Simple_repeat Simple_repeat 1 21 0 2023 145 7 0 chr1 280732703 280733020 -1460644 + AluSx SINE Alu 1 319 0 189 171 0 0 chr1 280733296 280733331 -1460333 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr1 280733772 280733807 -1459857 + AT_rich Low_complexity Low_complexity 1 35 0 32 57 0 0 chr1 280734015 280734068 -1459596 + AT_rich Low_complexity Low_complexity 1 53 0 742 201 57 6 chr1 280735045 280735204 -1458460 + FRAM SINE Alu 1 165 -11 2007 171 93 13 chr1 280735206 280735373 -1458291 + MSTB LTR MaLR 1 153 -273 1495 161 135 0 chr1 280735373 280735640 -1458024 + AluJb SINE Alu 1 303 -9 2007 171 93 13 chr1 280735640 280735857 -1457807 + MSTB LTR MaLR 153 416 -10 2040 122 6 22 chr1 280736147 280736459 -1457205 + AluSq SINE Alu 1 307 -6 2429 59 0 16 chr1 280736465 280736772 -1456892 + AluY SINE Alu 1 302 -9 1037 177 9 37 chr1 280736774 280736989 -1456675 + AluSx SINE Alu 1 209 -103 1619 136 0 16 chr1 280737108 280737359 -1456305 - AluSq SINE Alu -66 247 1 251 228 0 0 chr1 280737364 280737421 -1456243 + Charlie5 DNA MER1_type 2568 2624 0 297 0 0 0 chr1 280737547 280737580 -1456084 + (TG)n Simple_repeat Simple_repeat 2 34 0 2355 66 30 3 chr1 280738399 280738700 -1454964 - AluSc SINE Alu 0 309 1 1183 268 60 16 chr1 280738715 280739096 -1454568 - MER93a LTR ERV1 -4 398 1 2291 91 3 31 chr1 280739275 280739593 -1454071 - AluSg SINE Alu -1 309 1 2345 88 0 7 chr1 280739675 280739980 -1453684 - AluSc SINE Alu -6 303 1 452 226 68 8 chr1 280740069 280740202 -1453462 - L1 LINE L1 -1055 5091 4951 266 52 52 17 chr1 280740202 280740260 -1453404 + T-rich Low_complexity Low_complexity 1 60 0 1133 148 4 98 chr1 280740278 280740514 -1453150 - AluJb SINE Alu -98 214 1 5850 176 20 14 chr1 280740515 280741692 -1451972 - L1 LINE L1 -1183 4963 3780 2303 93 10 0 chr1 280741692 280741992 -1451672 - AluSx SINE Alu -9 303 1 444 209 124 90 chr1 280742030 280742264 -1451400 - MER31-int LTR ERV1 -2959 1977 1736 4425 167 38 6 chr1 280742307 280743122 -1450542 - L1PA15 LINE L1 0 6165 5325 2140 118 10 0 chr1 280743131 280743420 -1450244 - AluSx SINE Alu -20 292 1 2176 245 24 36 chr1 280743420 280744164 -1449500 - L1P LINE L1 -3012 3134 2400 292 151 19 0 chr1 280744265 280744318 -1449346 - L1M3 LINE L1 -442 5729 5676 1040 248 26 10 chr1 280744337 280744647 -1449017 - L1 LINE L1 -1311 4835 4521 451 281 13 0 chr1 280744656 280744809 -1448855 - L1 LINE L1 -3263 2883 2729 2203 116 0 0 chr1 280744829 280745121 -1448543 - AluSx SINE Alu -20 292 1 8545 41 9 0 chr1 280745839 280746799 -1446865 - LTR5 LTR ERVK 0 969 1 1877 168 0 10 chr1 280747559 280747862 -1445802 - AluJo SINE Alu -12 300 1 14458 88 3 6 chr1 280748111 280749618 -1444046 + L1P LINE L1 2739 4240 -1906 2550 70 0 6 chr1 280749618 280749931 -1443733 + AluY SINE Alu 1 311 0 14458 88 3 6 chr1 280749931 280750431 -1443233 + L1P LINE L1 4240 4740 -1406 1454 104 31 14 chr1 280750434 280750656 -1443008 - L1PA10 LINE L1 -5 6163 5938 876 236 99 73 chr1 280750906 280751161 -1442503 - HERVL74 LTR ERVL -4224 1461 1191 6651 23 3 272 chr1 280751161 280752579 -1441085 + SVA Other Other 11 1047 -339 876 236 99 73 chr1 280752579 280752708 -1440956 - HERVL74 LTR ERVL -4494 1191 1067 2232 93 10 13 chr1 280752864 280753165 -1440499 + AluY SINE Alu 1 300 -11 469 219 65 53 chr1 280753196 280753231 -1440433 - HERVL74 LTR ERVL -2873 683 650 1749 258 40 2 chr1 280753231 280753680 -1439984 - MER70A LTR ERVL -4 468 3 469 219 65 53 chr1 280753680 280753813 -1439851 - HERVL74 LTR ERVL -2906 650 513 898 290 33 16 chr1 280754807 280755110 -1438554 - LTR53 LTR ERVL -16 503 196 180 0 0 0 chr1 280755424 280755444 -1438220 + (TA)n Simple_repeat Simple_repeat 1 20 0 2240 105 0 7 chr1 280755451 280755746 -1437918 - AluSp SINE Alu -20 293 1 1530 209 0 14 chr1 280755794 280756090 -1437574 + AluJb SINE Alu 1 292 -20 2563 77 0 0 chr1 280756092 280756403 -1437261 + AluY SINE Alu 1 311 0 5109 147 2 10 chr1 280756608 280757754 -1435910 - L1PA15 LINE L1 0 6165 5003 207 0 0 0 chr1 280757754 280757777 -1435887 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2347 64 7 0 chr1 280757777 280758057 -1435607 - AluY SINE Alu -29 282 1 5262 116 26 10 chr1 280758101 280758917 -1434747 - L1MA2 LINE L1 0 6304 5476 2800 120 33 25 chr1 280758922 280759406 -1434258 - L1MA1 LINE L1 -1 6301 5814 2512 45 3 0 chr1 280759538 280759830 -1433834 - AluY SINE Alu -18 293 1 12112 72 28 2 chr1 280759830 280761404 -1432260 - HERVK14C LTR ERVK -18 7399 5785 3135 49 3 0 chr1 280761421 280761791 -1431873 - HERVK14C LTR ERVK -1758 5659 5289 * 3553 71 14 32 chr1 280761772 280762266 -1431398 - HERVK14C LTR ERVK -4863 2554 2070 495 151 0 0 chr1 280762292 280762365 -1431299 - HERVK14C LTR ERVK -5438 1979 1907 12745 96 22 1 chr1 280762365 280764104 -1429560 - HERVK14C LTR ERVK -5640 1777 3 523 152 0 71 chr1 280764104 280764216 -1429448 + AluJo SINE Alu 81 184 -128 486 99 0 14 chr1 280764216 280764287 -1429377 + MER4A-int LTR ERV1 6527 6596 -2 545 149 21 11 chr1 280764295 280764389 -1429275 + MER4A LTR ERV1 4 98 -566 1576 116 6 79 chr1 280764389 280764618 -1429046 + MER4A LTR ERV1 261 518 -146 1358 202 108 58 chr1 280764618 280765099 -1428565 + LTR10B LTR ERV1 1 505 0 1576 116 6 79 chr1 280765099 280765204 -1428460 + MER4A LTR ERV1 518 629 -35 348 125 18 0 chr1 280765199 280765255 -1428409 + LTR8 LTR ERV1 520 576 -115 * 371 136 0 0 chr1 280765259 280765318 -1428346 + Alu SINE Alu 242 300 0 * 950 108 0 0 chr1 280765313 280765442 -1428222 + LTR8 LTR ERV1 563 691 0 180 0 0 0 chr1 280765469 280765489 -1428175 + (TA)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr1 280765679 280765704 -1427960 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 3961 172 55 24 chr1 280765705 280766061 -1427603 + L1P4 LINE L1 4486 4830 -1335 2462 71 0 0 chr1 280766061 280766358 -1427306 - AluY SINE Alu -14 297 1 3961 172 55 24 chr1 280766358 280766990 -1426674 + L1P4 LINE L1 4830 5493 -672 1731 176 7 3 chr1 280766990 280767285 -1426379 + AluSx SINE Alu 3 298 -14 235 291 29 10 chr1 280767452 280767555 -1426109 + MER72 LTR ERV1 377 481 -241 273 221 90 75 chr1 280767630 280767801 -1425863 + LTR45B LTR ERV1 323 525 0 405 272 0 0 chr1 280767811 280767903 -1425761 + HERVL40 LTR ERVL 2236 2327 -3203 758 305 75 0 chr1 280767905 280768197 -1425467 + HERVL40 LTR ERVL 2577 2890 -2640 271 293 26 78 chr1 280768344 280768460 -1425204 + HERVL40 LTR ERVL 3065 3174 -2356 2239 90 28 0 chr1 280768591 280768880 -1424784 + AluSq SINE Alu 1 297 -16 531 311 80 1 chr1 280768955 280769256 -1424408 + HERVL40 LTR ERVL 3532 3880 -1650 2467 82 0 0 chr1 280769440 280769746 -1423918 + AluSg SINE Alu 1 306 -4 423 252 19 0 chr1 280769831 280769938 -1423726 - HERVL40 LTR ERVL -2723 2807 2699 361 248 20 10 chr1 280769941 280770042 -1423622 - HERVL40 LTR ERVL -2735 2795 2694 260 284 84 0 chr1 280770063 280770158 -1423506 + HERVL40 LTR ERVL 4191 4293 -1237 566 321 28 28 chr1 280770166 280770384 -1423280 + HERVL40 LTR ERVL 4439 4656 -874 821 282 104 17 chr1 280773046 280773401 -1420263 - MER21B LTR ERV1 -62 801 416 1407 224 165 20 chr1 280773476 280773967 -1419697 + MER92B LTR ERV1 66 627 -9 2113 163 15 0 chr1 280773971 280774303 -1419361 - MER1B DNA MER1_type 0 337 1 2180 117 19 30 chr1 280774865 280775233 -1418431 + THE1B LTR MaLR 1 364 0 2556 64 0 3 chr1 280775675 280775973 -1417691 - AluY SINE Alu -14 297 1 307 188 14 14 chr1 280775990 280776059 -1417605 + MER92B LTR ERV1 490 558 -78 2222 126 0 0 chr1 280776076 280776378 -1417286 - AluSx SINE Alu -10 302 1 284 151 38 0 chr1 280777242 280777295 -1416369 + FRAM/FAM SINE Alu 31 85 -90 442 284 89 41 chr1 280777379 280777650 -1416014 + MER93b LTR ERV1 90 373 0 383 220 184 0 chr1 280778623 280778764 -1414900 - Charlie5 DNA MER1_type 0 2623 2457 667 252 19 19 chr1 280778767 280778973 -1414691 - LTR7 LTR ERV1 -7 443 238 355 274 58 29 chr1 280779377 280779585 -1414079 - L1MC5 LINE L1 -742 7219 7006 252 269 64 58 chr1 280779636 280779705 -1413959 - L1MC4 LINE L1 -993 7049 6982 2399 86 0 7 chr1 280779705 280780009 -1413655 - AluSx SINE Alu -10 302 1 252 269 64 58 chr1 280780009 280780095 -1413569 - L1MC4 LINE L1 -1060 6982 6893 322 282 117 74 chr1 280780207 280780322 -1413342 - L1MEc LINE L1 -4646 1664 1555 2743 35 0 0 chr1 280780322 280780633 -1413031 - AluY SINE Alu 0 311 1 322 282 117 74 chr1 280780633 280780843 -1412821 - L1MEc LINE L1 -4755 1555 1325 528 340 88 58 chr1 280780850 280781385 -1412279 - L1MEc LINE L1 -4863 1256 706 3122 59 9 9 chr1 280781465 280781890 -1411774 - L1PA7 LINE L1 -4 6150 5726 265 232 239 26 chr1 280781895 280782050 -1411614 + L1ME1 LINE L1 5787 5977 -187 5760 142 4 2 chr1 280782069 280783045 -1410619 - L1P LINE L1 -1517 4629 3652 3291 152 53 22 chr1 280783038 280783283 -1410381 + L1P LINE L1 4642 4878 -1268 * 1982 133 13 7 chr1 280783283 280783583 -1410081 + AluSx SINE Alu 1 302 -10 3291 152 53 22 chr1 280783583 280784029 -1409635 + L1P LINE L1 4878 5355 -791 2861 98 2 2 chr1 280784030 280784437 -1409227 - L1PA10 LINE L1 -16 6152 5746 668 273 164 11 chr1 280785684 280785970 -1407694 - MER58B DNA MER1_type -11 330 1 2269 110 7 10 chr1 280785997 280786306 -1407358 + AluSq SINE Alu 2 309 -4 1957 100 23 32 chr1 280790514 280790823 -1402841 - AluSp SINE Alu -6 307 2 363 44 0 0 chr1 280790823 280790868 -1402796 + (TA)n Simple_repeat Simple_repeat 1 45 0 576 0 0 0 chr1 280790975 280791039 -1402625 + (GA)n Simple_repeat Simple_repeat 2 65 0 1077 67 0 54 chr1 280791039 280791188 -1402476 - AluSg/x SINE Alu -39 271 131 2079 116 3 20 chr1 280791189 280791490 -1402174 - AluSg SINE Alu -14 296 1 832 205 43 64 chr1 280791491 280791725 -1401939 + LTR52 LTR ERVL 75 303 -118 392 278 208 6 chr1 280791775 280791948 -1401716 - L1MC4a LINE L1 -1889 5919 5712 21 36 0 0 chr1 280792011 280792039 -1401625 + AT_rich Low_complexity Low_complexity 1 28 0 184 98 24 24 chr1 280792039 280792080 -1401584 + (CA)n Simple_repeat Simple_repeat 2 42 0 1503 176 7 40 chr1 280792086 280792364 -1401300 - AluJo SINE Alu -31 281 13 824 288 65 19 chr1 280792375 280792701 -1400963 + L1M4 LINE L1 2940 3249 -2897 7917 100 50 22 chr1 280792701 280793015 -1400649 + HSMAR1 DNA Mariner 3 307 -980 2501 70 3 0 chr1 280793015 280793315 -1400349 + AluSg SINE Alu 1 301 -9 7917 100 50 22 chr1 280793315 280794145 -1399519 + HSMAR1 DNA Mariner 307 1187 -100 2432 92 0 0 chr1 280794145 280794439 -1399225 - AluSg SINE Alu -16 294 1 7917 100 50 22 chr1 280794439 280794543 -1399121 + HSMAR1 DNA Mariner 1187 1287 0 824 288 65 19 chr1 280794543 280794757 -1398907 + L1M4 LINE L1 3249 3505 -2641 1212 269 101 25 chr1 280794785 280795458 -1398206 - LTR52-int LTR ERVL -2150 1406 782 2049 224 39 11 chr1 280795487 280795946 -1397718 - MER70A LTR ERVL 0 472 1 481 264 8 0 chr1 280797010 280797139 -1396525 - LTR53 LTR ERVL 0 519 390 309 209 96 61 chr1 280797166 280797281 -1396383 - LTR53 LTR ERVL -204 315 197 2335 104 0 7 chr1 280797790 280798097 -1395567 + AluSg SINE Alu 2 306 -4 2342 81 11 0 chr1 280798873 280799157 -1394507 - AluSc SINE Alu -22 287 1 1805 113 0 0 chr1 280799166 280799396 -1394268 - AluSc SINE Alu -24 285 56 855 117 6 151 chr1 280799466 280799486 -1394178 - AluJb SINE Alu -159 153 132 2499 62 0 0 chr1 280799486 280799798 -1393866 - AluY SINE Alu 0 311 2 855 117 6 151 chr1 280799798 280799956 -1393708 - AluJb SINE Alu -180 132 1 1040 279 64 8 chr1 280801952 280802310 -1391354 + MER68 LTR ERV1 1 378 -184 2380 88 10 3 chr1 280802867 280803175 -1390489 + AluSx SINE Alu 1 310 -2 435 259 27 41 chr1 280803175 280803312 -1390352 + MER93a LTR ERV1 242 378 -24 23 0 0 0 chr1 280803541 280803564 -1390100 + GC_rich Low_complexity Low_complexity 1 23 0 3721 91 57 0 chr1 280804366 280804914 -1388750 + LTR14C LTR ERVK 4 582 -5 418 134 24 12 chr1 280804920 280805002 -1388662 - FLAM_A SINE Alu -59 83 1 580 274 80 19 chr1 280807263 280807475 -1386189 + MER58B DNA MER1_type 94 318 -23 1460 139 19 35 chr1 280812981 280813074 -1380590 + AluJb SINE Alu 39 132 -180 2195 60 0 49 chr1 280813074 280813359 -1380305 + AluY SINE Alu 27 297 -14 1460 139 19 35 chr1 280813359 280813523 -1380141 + AluJb SINE Alu 132 292 -20 22 0 0 0 chr1 280813730 280813752 -1379912 + AT_rich Low_complexity Low_complexity 1 22 0 2102 136 3 3 chr1 280813935 280814237 -1379427 - AluSx SINE Alu -8 304 3 256 295 0 39 chr1 280814518 280814596 -1379068 - MIR SINE MIR -6 256 182 470 71 0 222 chr1 280814744 280814870 -1378794 + L1P4 LINE L1 5717 5814 -351 673 227 73 13 chr1 280814870 280815020 -1378644 - FAM SINE Alu -16 159 1 324 270 35 98 chr1 280815167 280815459 -1378205 + MLT1J LTR MaLR 136 493 -122 2522 60 3 0 chr1 280815510 280815808 -1377856 - AluY SINE Alu -12 299 1 225 237 82 59 chr1 280816063 280816198 -1377466 + MIR3 SINE MIR 9 146 -62 371 182 15 0 chr1 280816204 280816270 -1377394 + MLT1H LTR MaLR 9 75 -474 1611 23 0 0 chr1 280816270 280816441 -1377223 - AluY SINE Alu -140 171 1 2766 177 52 48 chr1 280816460 280816522 -1377142 - L1MB7 LINE L1 -9 6175 6115 2274 103 3 0 chr1 280816522 280816814 -1376850 - AluSg SINE Alu -17 293 1 2766 177 52 48 chr1 280816814 280817110 -1376554 - L1MB7 LINE L1 -69 6115 5822 1856 131 16 33 chr1 280817110 280817416 -1376248 - AluJb SINE Alu -11 301 1 2766 177 52 48 chr1 280817416 280817745 -1375919 - L1MB7 LINE L1 -362 5822 5484 1636 107 54 0 chr1 280817746 280817988 -1375676 - AluSg SINE Alu 0 310 56 249 219 0 0 chr1 280818026 280818090 -1375574 - L1MB7 LINE L1 -696 5488 5425 * 260 153 0 34 chr1 280818082 280818141 -1375523 - L1MB8 LINE L1 0 6178 6122 1067 92 8 0 chr1 280818297 280818428 -1375236 + AluSg SINE Alu 3 134 -176 1849 186 73 36 chr1 280819143 280819584 -1374080 + LTR2B LTR ERV1 34 490 0 2144 103 52 3 chr1 280821605 280821896 -1371768 + AluSg SINE Alu 1 305 -5 7382 140 20 18 chr1 280821898 280823369 -1370295 + L1P3 LINE L1 65 1578 -4734 2037 183 71 23 chr1 280823385 280823823 -1369841 + LTR2B LTR ERV1 32 490 0 10781 166 33 11 chr1 280823823 280824460 -1369204 + L1P3 LINE L1 1563 2185 -4276 2315 116 3 0 chr1 280824460 280824762 -1368902 - AluSx SINE Alu -9 303 1 10781 166 33 11 chr1 280824762 280827473 -1366191 + L1P3 LINE L1 2185 4980 -1481 2102 145 3 0 chr1 280827473 280827769 -1365895 + AluSx SINE Alu 1 297 -15 10781 166 33 11 chr1 280827769 280828168 -1365496 + L1P3 LINE L1 4980 5369 -1092 976 130 0 0 chr1 280828170 280828301 -1365363 + AluSg SINE Alu 1 131 -179 6344 67 14 27 chr1 280828321 280829420 -1364244 + L1PA8A LINE L1 5042 6131 0 557 270 29 0 chr1 280829457 280829631 -1364033 + L1MCa LINE L1 144 322 -6104 304 154 0 0 chr1 280829642 280829694 -1363970 + MER4A LTR ERV1 47 98 -566 * 1631 130 8 77 chr1 280829690 280830066 -1363598 + MER4A LTR ERV1 257 664 0 8128 188 31 13 chr1 280830066 280832493 -1361171 - L1PA12 LINE L1 -3739 3845 1599 500 321 28 28 chr1 280834938 280835156 -1358508 - HERVL40 LTR ERVL -874 4656 4439 318 272 19 0 chr1 280835278 280835381 -1358283 + HERVL40 LTR ERVL 2691 2795 -2735 382 252 19 0 chr1 280835384 280835491 -1358173 + HERVL40 LTR ERVL 2699 2807 -2723 2432 82 0 0 chr1 280835576 280835882 -1357782 - AluSg SINE Alu -4 306 1 491 232 16 0 chr1 280836066 280836191 -1357473 - HERVL40 LTR ERVL -1650 3880 3754 262 284 12 0 chr1 280836286 280836367 -1357297 - HERVL40 LTR ERVL -1917 3613 3532 2214 90 28 0 chr1 280836442 280836731 -1356933 - AluSq SINE Alu -16 297 1 662 305 75 0 chr1 280837125 280837417 -1356247 - HERVL40 LTR ERVL -2640 2890 2577 375 272 0 0 chr1 280837419 280837511 -1356153 - HERVL40 LTR ERVL -3203 2327 2236 225 204 75 54 chr1 280837599 280837692 -1355972 - LTR45B LTR ERV1 -72 417 323 2337 88 0 0 chr1 280838037 280838333 -1355331 - AluSg SINE Alu -14 296 1 266 320 48 0 chr1 280838404 280838529 -1355135 - HERVL40 LTR ERVL -3339 2191 2061 312 317 0 63 chr1 280838771 280838913 -1354751 - HERVL40 LTR ERVL -4364 1166 1034 821 263 80 74 chr1 280839205 280839487 -1354177 - LTR40a LTR ERVL 0 519 231 2443 64 0 32 chr1 280839487 280839801 -1353863 + AluY SINE Alu 1 304 -7 821 263 80 74 chr1 280839801 280840032 -1353632 - LTR40a LTR ERVL -288 231 3 2481 178 44 11 chr1 280840058 280840589 -1353075 + L1MA9 LINE L1 5542 6093 -219 1020 250 24 43 chr1 280840589 280840961 -1352703 - MLT1A1 LTR MaLR 0 365 1 2481 178 44 11 chr1 280840961 280840979 -1352685 + L1MA9 LINE L1 6093 6109 -203 25 65 0 0 chr1 280841040 280841086 -1352578 + AT_rich Low_complexity Low_complexity 1 46 0 29 43 0 43 chr1 280841653 280841722 -1351942 + AT_rich Low_complexity Low_complexity 1 66 0 794 263 82 53 chr1 280841783 280842006 -1351658 + L1ME3A LINE L1 5258 5473 -697 2625 37 0 0 chr1 280842006 280842304 -1351360 + AluY SINE Alu 1 298 -13 794 263 82 53 chr1 280842304 280842826 -1350838 + L1ME3A LINE L1 5473 6032 -138 235 261 17 17 chr1 280843095 280843214 -1350450 + A-rich Low_complexity Low_complexity 1 119 0 2102 81 0 0 chr1 280843695 280843954 -1349710 + AluY SINE Alu 37 295 -16 440 283 120 22 chr1 280844107 280844291 -1349373 - MIR SINE MIR -60 202 1 1918 134 38 40 chr1 280844941 280845314 -1348350 + THE1C LTR MaLR 2 373 -2 752 252 20 68 chr1 280845379 280845523 -1348141 + L1M4 LINE L1 3708 3857 -2289 756 179 0 0 chr1 280845523 280845640 -1348024 + FLAM_C SINE Alu 1 117 -16 752 252 20 68 chr1 280845640 280845892 -1347772 + L1M4 LINE L1 3857 4085 -2061 43 47 0 0 chr1 280846157 280846221 -1347443 + AT_rich Low_complexity Low_complexity 1 64 0 2404 75 7 0 chr1 280846386 280846681 -1346983 + AluY SINE Alu 1 297 -14 359 291 100 9 chr1 280848111 280848321 -1345343 + L1M4 LINE L1 3833 4061 -2085 1458 214 0 43 chr1 280848388 280848687 -1344977 + AluJo SINE Alu 1 286 -26 318 26 0 0 chr1 280848889 280848928 -1344736 + (CA)n Simple_repeat Simple_repeat 2 40 0 2230 105 10 13 chr1 280851069 280851383 -1342281 - AluSq SINE Alu 0 313 1 861 276 58 32 chr1 280851919 280852296 -1341368 + MER68 LTR ERV1 25 411 -151 188 0 74 0 chr1 280852699 280852726 -1340938 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1947 111 25 11 chr1 280852731 280853011 -1340653 - AluSq SINE Alu -29 284 1 533 246 43 0 chr1 280854243 280854381 -1339283 - LTR52-int LTR ERVL -3400 156 13 587 296 34 28 chr1 280854423 280854744 -1338920 - LTR52 LTR ERVL -91 330 8 3862 153 28 10 chr1 280856307 280856993 -1336671 + L1PA15 LINE L1 5466 6163 -2 519 268 122 11 chr1 280857008 280857295 -1336369 + L1MCa LINE L1 79 397 -6029 1986 179 81 5 chr1 280857296 280857692 -1335972 + MSTB LTR MaLR 1 426 0 5288 211 50 4 chr1 280857693 280858895 -1334769 + MSTB-int LTR MaLR 2 1258 -393 3388 137 11 6 chr1 280858877 280859416 -1334248 - THE1C-int LTR MaLR -198 1382 841 * 1040 152 0 0 chr1 280859416 280859581 -1334083 - THE1C-int LTR MaLR -575 1005 841 6059 122 12 44 chr1 280859581 280860619 -1333045 - THE1C-int LTR MaLR -575 1005 1 1100 122 39 53 chr1 280860619 280860919 -1332745 - THE1C LTR MaLR 0 375 1 13168 147 40 37 chr1 280860924 280861119 -1332545 - L1PBa LINE L1 -2661 4201 4008 1755 124 116 0 chr1 280861119 280861386 -1332278 - AluSg SINE Alu -2 298 1 13168 147 40 37 chr1 280861386 280862490 -1331174 - L1PBa LINE L1 -2854 4008 2909 2339 109 0 0 chr1 280862490 280862792 -1330872 - AluSg SINE Alu -6 304 3 13168 147 40 37 chr1 280862792 280863047 -1330617 - L1PBa LINE L1 -3953 2909 2656 1690 52 0 0 chr1 280863047 280863240 -1330424 + AluY SINE Alu 1 193 -118 408 50 0 0 chr1 280863240 280863300 -1330364 + AluY SINE Alu 247 306 -4 13168 147 40 37 chr1 280863300 280865372 -1328292 - L1PBa LINE L1 -4205 2657 496 2171 73 3 14 chr1 280865372 280865685 -1327979 + AluY SINE Alu 1 310 0 4815 211 55 1 chr1 280865792 280866817 -1326847 + L1M1 LINE L1 14 1093 -6472 519 152 0 0 chr1 280866845 280866950 -1326714 + L1M1 LINE L1 3334 3438 -4127 2201 161 132 51 chr1 280866950 280867649 -1326015 + LTR25 LTR ERV1 3 794 0 3047 220 35 31 chr1 280867696 280868638 -1325026 + L1M1 LINE L1 3560 4505 -3060 582 139 0 0 chr1 280868640 280868726 -1324938 + AluSg1 SINE Alu 1 86 -223 740 121 13 27 chr1 280868728 280868877 -1324787 + L1MA3 LINE L1 4850 4996 -1150 5509 145 27 14 chr1 280869044 280870356 -1323308 + L1MA3 LINE L1 4976 6305 0 2209 266 132 26 chr1 280870382 280871372 -1322292 + L1M4 LINE L1 2777 3661 -2485 2420 45 0 17 chr1 280871372 280871664 -1322000 + AluY SINE Alu 1 287 -24 2209 266 132 26 chr1 280871664 280872701 -1320963 + L1M4 LINE L1 3661 5019 -1127 798 212 56 6 chr1 280873477 280873656 -1320008 + MSTB LTR MaLR 3 190 -236 2138 119 7 0 chr1 280873666 280873959 -1319705 + AluSx SINE Alu 1 295 -17 1208 183 53 57 chr1 280874063 280874309 -1319355 - AluJo SINE Alu -53 259 15 394 232 57 22 chr1 280874400 280874579 -1319085 - L1M3c LINE L1 -4916 1397 809 438 298 13 6 chr1 280874639 280874797 -1318867 - L1M4c LINE L1 -4855 1181 1023 290 262 41 8 chr1 280874832 280874954 -1318710 - L1M4c LINE L1 -4911 1044 919 408 20 0 0 chr1 280874954 280875003 -1318661 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1419 266 82 23 chr1 280876992 280877528 -1316136 - L1M4 LINE L1 -1314 4832 4235 2293 85 0 0 chr1 280877528 280877860 -1315804 - AluY SINE Alu 0 332 1 1419 266 82 23 chr1 280877860 280878093 -1315571 - L1M4 LINE L1 -1911 4235 4017 1216 209 4 17 chr1 280878105 280878344 -1315320 - AluJo SINE Alu -76 236 1 414 294 97 25 chr1 280878495 280878774 -1314890 - L1M4 LINE L1 -2310 3836 3538 21 0 0 0 chr1 280879388 280879409 -1314255 + AT_rich Low_complexity Low_complexity 1 21 0 1188 166 128 31 chr1 280879409 280879710 -1313954 - L1MA7 LINE L1 0 6291 5963 2370 52 31 3 chr1 280880167 280880458 -1313206 - AluY SINE Alu -12 299 1 180 0 0 0 chr1 280884122 280884142 -1309522 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr1 280884241 280884261 -1309403 + (A)n Simple_repeat Simple_repeat 1 20 0 2002 145 0 3 chr1 280884262 280884566 -1309098 + AluSg SINE Alu 1 303 -7 2306 89 3 3 chr1 280884652 280884945 -1308719 + AluSp SINE Alu 1 293 -20 23 0 0 0 chr1 280885256 280885279 -1308385 + AT_rich Low_complexity Low_complexity 1 23 0 2314 96 3 0 chr1 280885373 280885665 -1307999 + AluSg SINE Alu 1 293 -17 940 245 110 11 chr1 280886788 280887070 -1306594 - AluJo SINE Alu -2 310 1 446 254 22 87 chr1 280887560 280887745 -1305919 - MLT1D LTR MaLR -330 175 3 310 233 11 22 chr1 280889021 280889111 -1304553 - MER53 DNA DNA -98 91 3 316 58 0 3 chr1 280889735 280889779 -1303885 + L1PA10 LINE L1 6023 6064 -104 960 195 72 25 chr1 280889779 280890013 -1303651 - MER52A LTR ERV1 -1267 488 180 636 173 7 40 chr1 280890482 280890759 -1302905 + (TA)n Simple_repeat Simple_repeat 1 267 0 2586 49 0 3 chr1 280892056 280892361 -1301303 + AluY SINE Alu 1 304 -7 278 250 66 52 chr1 280892829 280892965 -1300699 + MIR3 SINE MIR 9 146 -62 1701 265 52 0 chr1 280892971 280893409 -1300255 + MLT1H LTR MaLR 9 469 -80 1051 243 55 13 chr1 280894057 280894366 -1299298 + MER33 DNA MER1_type 1 322 -2 23 86 0 0 chr1 280894455 280894513 -1299151 + AT_rich Low_complexity Low_complexity 1 58 0 526 218 67 42 chr1 280895310 280895475 -1298189 - MER93a LTR ERV1 0 402 234 417 87 261 0 chr1 280895509 280895578 -1298086 - FLAM_C SINE Alu -32 111 25 483 271 86 27 chr1 280895612 280895794 -1297870 - MER93a LTR ERV1 -168 234 35 2049 171 102 39 chr1 280895794 280896255 -1297409 + LTR2B LTR ERV1 1 490 0 483 271 86 27 chr1 280896255 280896293 -1297371 - MER93a LTR ERV1 -367 35 1 35 24 0 0 chr1 280897747 280897789 -1295875 + AT_rich Low_complexity Low_complexity 1 42 0 5581 108 60 16 chr1 280897790 280898228 -1295436 - L1PB2 LINE L1 -5 6146 5729 2094 122 0 22 chr1 280898228 280898539 -1295125 - AluSx SINE Alu -8 304 1 5581 108 60 16 chr1 280898539 280899169 -1294495 - L1PB2 LINE L1 -422 5729 5042 1059 264 64 52 chr1 280899485 280899909 -1293755 - L1 LINE L1 -1993 4153 3725 229 296 0 0 chr1 280899912 280899983 -1293681 - L1P LINE L1 -2374 3772 3702 434 257 22 7 chr1 280900011 280900147 -1293517 - L1 LINE L1 -2644 3502 3365 234 93 0 23 chr1 280900228 280900271 -1293393 - L1PA15 LINE L1 -4 6161 6120 * 592 65 0 0 chr1 280900269 280900346 -1293318 + L1P4 LINE L1 5715 5791 -374 11763 180 83 70 chr1 280900347 280900570 -1293094 - L1P4 LINE L1 -446 5719 5500 180 0 0 0 chr1 280900570 280900590 -1293074 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1748 183 0 3 chr1 280900593 280900888 -1292776 - AluJb SINE Alu -16 296 3 11763 180 83 70 chr1 280900888 280901520 -1292144 - L1P4 LINE L1 -666 5499 4877 2438 71 0 0 chr1 280901520 280901817 -1291847 + AluY SINE Alu 1 297 -14 11763 180 83 70 chr1 280901817 280904222 -1289442 - L1P4 LINE L1 -1288 4877 2293 720 164 26 0 chr1 280904222 280904338 -1289326 - Tigger3(Golem) DNA MER2_type -39 2990 2872 11763 180 83 70 chr1 280904338 280904811 -1288853 - L1P4 LINE L1 -3872 2293 1828 1380 256 12 35 chr1 280905944 280906346 -1287318 - MER68 LTR ERV1 -169 393 1 2396 101 0 0 chr1 280906502 280906809 -1286855 + AluSc SINE Alu 1 307 -2 919 227 113 61 chr1 280907243 280907652 -1286012 - MSTB1 LTR MaLR -2 430 1 2059 138 3 0 chr1 280907857 280908154 -1285510 + AluSp SINE Alu 1 298 -15 1322 164 52 0 chr1 280908275 280908506 -1285158 - MSTB1 LTR MaLR 0 432 190 2336 106 0 0 chr1 280908510 280908813 -1284851 - AluSx SINE Alu -4 308 6 1360 181 11 21 chr1 280908818 280909100 -1284564 - L1 LINE L1 -858 5288 5010 22 70 0 0 chr1 280909350 280909393 -1284271 + AT_rich Low_complexity Low_complexity 1 43 0 958 162 0 0 chr1 280909554 280909702 -1283962 - FRAM SINE Alu -7 169 22 12199 163 24 71 chr1 280909702 280909930 -1283734 - L1M1 LINE L1 -620 7103 6866 2188 109 0 0 chr1 280909930 280910214 -1283450 + AluSg SINE Alu 1 284 -26 12199 163 24 71 chr1 280910214 280910347 -1283317 - L1M1 LINE L1 -857 6866 6728 2912 117 31 9 chr1 280910347 280910766 -1282898 + MSTA LTR MaLR 1 428 0 12199 163 24 71 chr1 280910766 280913266 -1280398 - L1M1 LINE L1 -995 6728 4112 901 210 6 0 chr1 280913266 280913428 -1280236 - AluJo/FRAM SINE Alu -3 299 137 1029 84 0 49 chr1 280913428 280913475 -1280189 - AluSq/x SINE Alu -177 136 88 4958 68 3 2 chr1 280913475 280914061 -1279603 + LTR14C LTR ERVK 1 587 0 1029 84 0 49 chr1 280914061 280914156 -1279508 - AluSq/x SINE Alu -225 88 1 12199 163 24 71 chr1 280914156 280914392 -1279272 - L1M1 LINE L1 -3609 4114 4015 311 322 0 0 chr1 280914393 280914483 -1279181 - L1MC4 LINE L1 -1339 6703 6614 219 186 0 0 chr1 280914487 280914530 -1279134 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 819 174 0 30 chr1 280914530 280914662 -1279002 - AluJo SINE Alu -183 129 2 2262 160 24 28 chr1 280914663 280915414 -1278250 - L1M1 LINE L1 -3533 4032 3270 * 2696 108 19 54 chr1 280915394 280915875 -1277789 + L1M1 LINE L1 2440 2903 -4662 5730 187 26 0 chr1 280915887 280916875 -1276789 - L1M1 LINE L1 -5371 2194 1181 9353 163 27 9 chr1 280916887 280917947 -1275717 - MSTA-int LTR MaLR -32 1619 520 6565 74 30 0 chr1 280917947 280919144 -1274520 - L1PA8A LINE L1 -4 6127 4922 9353 163 27 9 chr1 280919144 280919674 -1273990 - MSTA-int LTR MaLR -1131 520 1 2950 137 14 5 chr1 280919674 280920098 -1273566 - MSTA LTR MaLR 0 428 1 5673 173 39 61 chr1 280920104 280921301 -1272363 - L1M1 LINE L1 -6386 1179 9 354 342 6 13 chr1 280921760 280921918 -1271746 - L1 LINE L1 -2367 3779 3623 279 213 0 0 chr1 280921922 280921997 -1271667 + L1MA4 LINE L1 6226 6300 0 1904 124 0 0 chr1 280922952 280923209 -1270455 + AluSx SINE Alu 40 296 -16 182 247 13 0 chr1 280923241 280923318 -1270346 + (GAATG)n Simple_repeat Simple_repeat 3 80 0 508 239 6 6 chr1 280923341 280923521 -1270143 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 * 599 224 6 0 chr1 280923511 280923690 -1269974 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 548 240 0 6 chr1 280923740 280923915 -1269749 + (AATAG)n Simple_repeat Simple_repeat 3 176 0 210 258 0 0 chr1 280923931 280924020 -1269644 + (GAATG)n Simple_repeat Simple_repeat 2 90 0 2360 82 7 0 chr1 280924021 280924327 -1269337 + AluSg SINE Alu 1 308 -2 342 244 12 18 chr1 280924327 280924495 -1269169 + (AATAG)n Simple_repeat Simple_repeat 5 171 0 545 257 6 0 chr1 280924533 280924712 -1268952 + (AATAG)n Simple_repeat Simple_repeat 1 180 0 356 267 20 0 chr1 280924715 280924816 -1268848 + (GAGTG)n Simple_repeat Simple_repeat 4 106 0 1779 157 35 19 chr1 280924816 280925128 -1268536 - MSTC LTR MaLR -111 317 1 943 133 5 117 chr1 280925214 280925410 -1268254 - AluJb SINE Alu -14 298 125 1359 101 0 83 chr1 280925424 280925641 -1268023 + AluSg SINE Alu 1 199 -111 485 49 0 0 chr1 280925643 280925704 -1267960 - AluY SINE Alu -8 310 250 * 768 121 0 16 chr1 280925699 280925846 -1267818 + AluSg SINE Alu 184 310 0 499 228 89 16 chr1 280925948 280926071 -1267593 + FLAM_A SINE Alu 2 133 -9 2251 88 0 0 chr1 280926073 280926358 -1267306 + AluSq SINE Alu 1 285 -28 1302 85 0 0 chr1 280926194 280926358 -1267306 + AluSq SINE Alu 122 318 0 298 0 0 0 chr1 280926358 280926391 -1267273 + (TAA)n Simple_repeat Simple_repeat 2 180 0 23 0 0 0 chr1 280926553 280926576 -1267088 + AT_rich Low_complexity Low_complexity 1 23 0 2323 96 0 3 chr1 280927238 280927539 -1266125 - AluSx SINE Alu -12 300 1 733 157 30 37 chr1 280927551 280927685 -1265979 - FLAM_C SINE Alu 0 133 1 826 238 63 8 chr1 280927685 280927930 -1265734 - L1PA15-16 LINE L1 -3757 3092 2831 806 188 0 8 chr1 280927930 280928058 -1265606 - FLAM_C SINE Alu -15 128 2 382 204 0 0 chr1 280928059 280928157 -1265507 - L1PA15-16 LINE L1 -4009 2840 2743 2035 95 33 0 chr1 280928427 280928744 -1264920 - AluSg SINE Alu 0 326 1 180 0 0 0 chr1 280929951 280929971 -1263693 + (TA)n Simple_repeat Simple_repeat 2 21 0 2103 104 3 7 chr1 280929974 280930263 -1263401 - AluY SINE Alu -23 288 1 180 176 0 0 chr1 280930737 280930771 -1262893 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2374 205 84 20 chr1 280930787 280931421 -1262243 - L1MA9 LINE L1 -28 6284 5611 2400 88 0 0 chr1 280931421 280931726 -1261938 - AluSx SINE Alu -5 307 3 838 170 15 0 chr1 280931728 280931863 -1261801 - FLAM_C SINE Alu 0 143 7 613 200 71 82 chr1 280932088 280932216 -1261448 - L1MB2 LINE L1 -181 5990 5850 810 78 0 0 chr1 280932216 280932319 -1261345 - L1MA3 LINE L1 0 6305 6203 613 200 71 82 chr1 280932319 280932424 -1261240 - L1MB2 LINE L1 -321 5850 5745 289 222 14 0 chr1 280932444 280932516 -1261148 - L1M3 LINE L1 -322 5922 5850 198 0 0 0 chr1 280932520 280932542 -1261122 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1806 132 10 34 chr1 280932590 280932886 -1260778 - AluSx SINE Alu -23 289 1 432 278 0 0 chr1 280932890 280933005 -1260659 - L1M3 LINE L1 -382 5853 5739 1114 254 30 15 chr1 280933008 280933109 -1260555 - L1M3 LINE L1 -1296 4914 4816 1998 113 58 3 chr1 280933109 280933401 -1260263 - AluSx SINE Alu -4 308 1 1114 254 30 15 chr1 280933401 280933897 -1259767 - L1M3 LINE L1 -1394 4816 2672 2496 71 0 0 chr1 280934084 280934393 -1259271 - AluY SINE Alu -2 309 1 2257 104 0 0 chr1 280934393 280934690 -1258974 - AluSx SINE Alu -15 297 1 1535 118 5 9 chr1 280934837 280935057 -1258607 - AluSx SINE Alu -93 219 1 225 193 88 0 chr1 280935057 280935114 -1258550 - L1MEc LINE L1 -4679 1717 1656 * 650 266 114 25 chr1 280935103 280935498 -1258166 - L1M3 LINE L1 -4813 1328 899 2042 116 0 7 chr1 280935510 280935822 -1257842 - AluSg SINE Alu 0 310 1 22 0 0 0 chr1 280936239 280936261 -1257403 + AT_rich Low_complexity Low_complexity 1 22 0 6464 165 27 18 chr1 280936261 280936769 -1256895 - L1MA2 LINE L1 -8 6296 5794 1764 94 113 4 chr1 280936769 280937035 -1256629 - AluSc SINE Alu -14 295 1 6464 165 27 18 chr1 280937035 280938734 -1254930 - L1MA2 LINE L1 -510 5794 2234 411 179 17 26 chr1 280938752 280938869 -1254795 + CT-rich Low_complexity Low_complexity 1 116 0 1805 198 94 106 chr1 280938908 280938940 -1254724 - L1M1 LINE L1 -3900 3665 3634 1630 156 63 0 chr1 280938940 280939209 -1254455 - AluJb SINE Alu -26 286 1 1805 198 94 106 chr1 280939209 280939736 -1253928 - L1M1 LINE L1 -3931 3634 3148 1695 117 8 32 chr1 280939737 280939903 -1253761 - AluSp SINE Alu -17 296 136 2493 50 0 13 chr1 280939903 280940206 -1253458 - AluY SINE Alu -12 299 1 1695 117 8 32 chr1 280940206 280940287 -1253377 - AluSp SINE Alu -177 136 55 1783 121 37 14 chr1 280940289 280940586 -1253078 - L1M1 LINE L1 -4541 3024 2721 1512 185 11 4 chr1 280942648 280942929 -1250735 + AluJb SINE Alu 2 284 -28 5457 107 90 7 chr1 280943437 280944268 -1249396 + LTR13 LTR ERVK 108 1007 0 1213 99 0 0 chr1 280944268 280944430 -1249234 + AluSg/x SINE Alu 148 309 -1 1150 277 58 37 chr1 280944490 280945007 -1248657 - L1MEc LINE L1 -5832 564 37 2196 135 135 8 chr1 280945182 280945559 -1248105 + MSTA LTR MaLR 4 428 0 10193 143 4 36 chr1 280945561 280947191 -1246473 + MSTA-int LTR MaLR 3 1580 0 2397 123 131 11 chr1 280947191 280947573 -1246091 + MSTA LTR MaLR 1 428 0 1643 258 30 68 chr1 280947587 280947949 -1245715 + L2 LINE L2 2356 2730 -583 2479 75 3 0 chr1 280947949 280948254 -1245410 + AluSp SINE Alu 1 306 -7 1643 258 30 68 chr1 280948254 280948389 -1245275 + L2 LINE L2 2730 2869 -444 1485 200 21 17 chr1 280948389 280948679 -1244985 - AluJo SINE Alu -16 296 6 1643 258 30 68 chr1 280948679 280948692 -1244972 + L2 LINE L2 2869 2881 -432 1897 132 28 21 chr1 280948692 280948980 -1244684 - AluSx SINE Alu -22 290 1 1643 258 30 68 chr1 280948980 280949199 -1244465 + L2 LINE L2 2881 3059 -254 40 21 0 0 chr1 280949211 280949258 -1244406 + AT_rich Low_complexity Low_complexity 1 47 0 2276 121 13 116 chr1 280949267 280949410 -1244254 - MSTC LTR MaLR -12 416 260 1785 127 40 75 chr1 280949410 280949732 -1243932 - AluSx SINE Alu -1 311 1 2276 121 13 116 chr1 280949732 280949810 -1243854 - MSTC LTR MaLR -168 260 176 2317 65 34 0 chr1 280949810 280950101 -1243563 - AluY SINE Alu -10 301 1 2276 121 13 116 chr1 280950101 280950287 -1243377 - MSTC LTR MaLR -252 176 59 2149 119 0 22 chr1 280950287 280950598 -1243066 - AluSx SINE Alu -8 304 1 2276 121 13 116 chr1 280950598 280950652 -1243012 - MSTC LTR MaLR -369 59 1 291 188 109 0 chr1 280950652 280950716 -1242948 + MER21B LTR ERV1 19 89 -774 3472 214 70 4 chr1 280950739 280951464 -1242200 + MER21B LTR ERV1 19 791 -72 335 213 35 148 chr1 280951538 280951740 -1241924 + L2 LINE L2 3054 3232 -81 790 203 0 8 chr1 280951749 280951882 -1241782 - AluJb SINE Alu -179 133 2 357 239 57 0 chr1 280951886 280951974 -1241690 + L2 LINE L2 3221 3313 0 335 341 111 72 chr1 280952019 280952210 -1241454 - L2 LINE L2 -349 2965 2783 2186 70 63 11 chr1 280952210 280952494 -1241170 + AluY SINE Alu 1 299 -12 335 341 111 72 chr1 280952494 280952841 -1240823 - L2 LINE L2 -531 2783 2406 1635 133 104 0 chr1 280954251 280954529 -1239135 - AluJb SINE Alu -5 307 1 307 100 40 0 chr1 280955584 280955634 -1238030 - Alu SINE Alu -249 52 1 1233 226 62 134 chr1 280955821 280956283 -1237381 - MLT1G1 LTR MaLR -7 588 94 2531 62 3 0 chr1 280956283 280956590 -1237074 + AluY SINE Alu 1 308 -3 1233 226 62 134 chr1 280956590 280956746 -1236918 - MLT1G1 LTR MaLR -501 94 14 1396 135 171 16 chr1 280956746 280956998 -1236666 + AluJo SINE Alu 1 291 -11 1233 226 62 134 chr1 280956998 280957012 -1236652 - MLT1G1 LTR MaLR -581 14 1 28 29 0 0 chr1 280957056 280957091 -1236573 + AT_rich Low_complexity Low_complexity 1 35 0 2076 99 0 26 chr1 280957246 280957550 -1236114 - AluSc SINE Alu -13 296 1 385 241 112 73 chr1 280957570 280957802 -1235862 - L1MC4 LINE L1 -31 8011 7771 903 147 8 0 chr1 280957804 280957933 -1235731 + FLAM_C SINE Alu 1 130 -3 1368 113 0 0 chr1 280958019 280958205 -1235459 - AluSg/x SINE Alu -15 295 110 364 168 84 63 chr1 280958228 280958323 -1235341 + MLT1J LTR MaLR 82 178 -333 1080 87 58 39 chr1 280958425 280958631 -1235033 - SVA Other Other -1166 220 11 1119 235 92 25 chr1 280958639 280958997 -1234667 + HERVL74 LTR ERVL 1203 1584 -4101 967 232 111 36 chr1 280959019 280959146 -1234518 - L1M4 LINE L1 -2654 3492 3376 2130 87 45 3 chr1 280959146 280959435 -1234229 - AluY SINE Alu -9 302 2 967 232 111 36 chr1 280959435 280959837 -1233827 - L1M4 LINE L1 -2770 3376 2923 3892 115 0 2 chr1 280960002 280960514 -1233150 - MER9 LTR ERVK 0 511 1 2435 96 5 4 chr1 280960514 280960851 -1232813 - HERVK9 LTR ERVK 0 5916 4922 15520 67 3 1 chr1 280960892 280962812 -1230852 - HERVK9 LTR ERVK -282 5634 3711 13785 50 18 0 chr1 280962812 280964456 -1229208 - HERVK9 LTR ERVK -3130 2786 1113 4554 70 2 3 chr1 280964457 280965026 -1228638 - HERVK9 LTR ERVK -5348 568 1 3543 101 0 4 chr1 280965026 280965500 -1228164 - MER9 LTR ERVK 0 511 40 927 256 22 72 chr1 280965598 280965958 -1227706 - LTR52 LTR ERVL -67 354 13 399 189 0 0 chr1 280966029 280966103 -1227561 + L1P3 LINE L1 1 74 -5801 2396 89 0 3 chr1 280966104 280966406 -1227258 + AluY SINE Alu 2 302 -9 717 162 70 0 chr1 280966495 280966637 -1227027 + L1MA10 LINE L1 6176 6327 -7 2223 108 3 0 chr1 280966985 280967281 -1226383 + AluSx SINE Alu 1 297 -15 2066 122 17 0 chr1 280967622 280967910 -1225754 - AluSg SINE Alu -17 293 1 1888 84 84 11 chr1 280968334 280968633 -1225031 + AluSq SINE Alu 4 321 0 2151 112 3 3 chr1 280968852 280969146 -1224518 - AluSx SINE Alu -18 294 1 3295 188 45 28 chr1 280969439 280970143 -1223521 - L1MB8 LINE L1 -9 6169 5454 1130 157 289 13 chr1 280970423 280970735 -1222929 - L1MD1 LINE L1 -14 6228 5831 988 228 115 88 chr1 280970803 280971395 -1222269 - L1MC4 LINE L1 -137 7905 7298 1826 53 129 15 chr1 280971624 280971887 -1221777 - AluY SINE Alu -18 293 1 1794 167 3 3 chr1 280971964 280972257 -1221407 - AluJo SINE Alu -19 293 1 24 0 0 0 chr1 280973155 280973179 -1220485 + AT_rich Low_complexity Low_complexity 1 24 0 1761 147 0 50 chr1 280973237 280973536 -1220128 + AluJo SINE Alu 6 289 -23 2373 98 0 19 chr1 280973558 280973876 -1219788 + AluSx SINE Alu 1 312 0 183 388 15 0 chr1 280976760 280976827 -1216837 + MIR SINE MIR 164 231 -31 205 182 45 0 chr1 280976871 280976915 -1216749 + A-rich Low_complexity Low_complexity 5 50 0 1609 176 36 4 chr1 280977265 280977544 -1216120 - AluJo SINE Alu -24 288 1 4052 100 3 51 chr1 280978826 280979357 -1214307 - L1MA1 LINE L1 -463 5839 5284 2058 120 17 13 chr1 280979357 280979657 -1214007 - AluSx SINE Alu -11 301 1 4052 100 3 51 chr1 280979657 280979827 -1213837 - L1MA1 LINE L1 -1018 5284 5107 2900 0 0 0 chr1 280979827 280980133 -1213531 - AluYa5 SINE Alu -5 306 1 4052 100 3 51 chr1 280980133 280980211 -1213453 - L1MA1 LINE L1 -1195 5107 5098 3992 133 6 27 chr1 280980211 280980239 -1213425 - MER4B LTR ERV1 0 610 583 2253 116 0 0 chr1 280980239 280980540 -1213124 - AluSx SINE Alu -11 301 1 3992 133 6 27 chr1 280980540 280981134 -1212530 - MER4B LTR ERV1 -27 583 1 4052 100 3 51 chr1 280981134 280981153 -1212511 - L1MA1 LINE L1 -1204 5098 5080 1506 308 28 2 chr1 280981167 280981596 -1212068 - L1PA13 LINE L1 -6347 440 1 1946 135 10 13 chr1 280982595 280982898 -1210766 + AluJb SINE Alu 11 312 0 2444 42 16 35 chr1 280984083 280984395 -1209269 - AluY SINE Alu -5 306 1 26 30 0 0 chr1 280985277 280985310 -1208354 + AT_rich Low_complexity Low_complexity 1 33 0 361 121 136 0 chr1 280985562 280985628 -1208036 + FLAM_C SINE Alu 36 110 -23 2421 82 0 9 chr1 280985636 280985951 -1207713 - AluSx SINE Alu 0 312 1 386 275 175 31 chr1 280986017 280986377 -1207287 - L1M4 LINE L1 -3463 2683 2272 2281 88 0 16 chr1 280986918 280987223 -1206441 - AluSg SINE Alu -10 300 1 27 0 0 0 chr1 280987255 280987282 -1206382 + AT_rich Low_complexity Low_complexity 1 27 0 478 230 146 128 chr1 280987400 280987681 -1205983 - L1MC4a LINE L1 -1801 6007 5732 1869 138 3 18 chr1 280987681 280987964 -1205700 - AluSx SINE Alu -33 279 1 478 230 146 128 chr1 280987964 280988422 -1205242 - L1MC4a LINE L1 -2076 5732 5255 2073 147 7 3 chr1 280989081 280989388 -1204276 - AluJb SINE Alu -4 308 1 23 0 0 0 chr1 280989480 280989503 -1204161 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr1 280989563 280989591 -1204073 + AT_rich Low_complexity Low_complexity 1 28 0 336 269 214 0 chr1 280990908 280991090 -1202574 + MIR SINE MIR 42 262 0 1630 148 61 0 chr1 280991572 280991850 -1201814 - Tigger1 DNA MER2_type 0 2418 2124 1552 43 5 5 chr1 280991950 280992136 -1201528 - AluY SINE Alu -109 202 17 1012 244 86 34 chr1 280992146 280992531 -1201133 - MER21B LTR ERV1 -62 801 397 * 1343 251 142 21 chr1 280992530 280993065 -1200599 + MER92B LTR ERV1 37 636 0 303 49 0 0 chr1 280994379 280994420 -1199244 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 10805 34 65 8 chr1 280994425 280995729 -1197935 + SVA Other Other 2 1380 -6 796 300 37 25 chr1 280995743 280996150 -1197514 + HERVI LTR ERV1 1685 2096 -5689 1822 137 0 33 chr1 280996373 280996584 -1197080 - AluSx SINE Alu 0 312 128 210 37 0 0 chr1 280996584 280996611 -1197053 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1822 137 0 33 chr1 280996611 280996726 -1196938 - AluSx SINE Alu -184 128 11 21 36 0 0 chr1 280997231 280997259 -1196405 + AT_rich Low_complexity Low_complexity 1 28 0 493 330 15 15 chr1 280997417 280997617 -1196047 + MER57B LTR ERV1 36 235 -199 8905 168 25 1 chr1 280997620 280999291 -1194373 + L1PA13 LINE L1 2012 3734 -3063 1549 98 20 6 chr1 280999272 280999570 -1194094 + L1PA8A LINE L1 5127 5424 -707 * 370 16 0 0 chr1 280999574 280999626 -1194038 + L1PA8A LINE L1 5613 5664 -467 182 276 184 20 chr1 280999739 280999837 -1193827 + MIR SINE MIR 133 246 -16 3748 162 16 124 chr1 280999840 281000077 -1193587 - MER6 DNA MER2_type 0 865 604 556 154 0 0 chr1 281000077 281000155 -1193509 + FRAM SINE Alu 32 109 -67 3748 162 16 124 chr1 281000155 281000394 -1193270 - MER6 DNA MER2_type -261 604 341 2285 78 0 31 chr1 281000394 281000715 -1192949 - AluY SINE Alu 0 311 1 3748 162 16 124 chr1 281000715 281000895 -1192769 - MER6 DNA MER2_type -524 341 243 2189 122 0 0 chr1 281000895 281001191 -1192473 - AluSx SINE Alu -16 296 1 3748 162 16 124 chr1 281001191 281001351 -1192313 - MER6 DNA MER2_type -622 243 67 1026 102 0 0 chr1 281001417 281001554 -1192110 + L1PA6 LINE L1 6015 6151 -3 2124 130 54 38 chr1 281002051 281002419 -1191245 - THE1C LTR MaLR -1 374 1 234 174 0 0 chr1 281002570 281002616 -1191048 + L1P LINE L1 4471 4516 -1630 1653 130 56 30 chr1 281002616 281003031 -1190633 + MER51A LTR ERV1 1 634 0 3962 199 8 13 chr1 281003031 281003853 -1189811 + L1P LINE L1 4513 5330 -816 502 136 0 0 chr1 281003855 281003921 -1189743 + AluJ/FLAM SINE Alu 3 68 -244 1921 223 0 0 chr1 281003922 281004340 -1189324 + L1PB1 LINE L1 4657 5074 -1072 6337 104 41 2 chr1 281006633 281007706 -1185958 + L1PB1 LINE L1 5042 6150 -1 3041 107 2 41 chr1 281007714 281008201 -1185463 + L1MA1 LINE L1 5771 6238 -64 545 117 287 0 chr1 281008755 281008849 -1184815 - 5S rRNA rRNA 0 121 1 2344 85 3 16 chr1 281009015 281009331 -1184333 + AluSx SINE Alu 1 312 0 2081 62 16 0 chr1 281009545 281009803 -1183861 - AluSp SINE Alu -10 303 42 1380 190 35 21 chr1 281009909 281010198 -1183466 + AluJo SINE Alu 1 293 -19 230 210 49 74 chr1 281010199 281010280 -1183384 - MER67C LTR ERV1 -612 98 20 1093 83 0 0 chr1 281011030 281011175 -1182489 - AluYa5 SINE Alu -7 304 160 1400 265 172 7 chr1 281011927 281012391 -1181273 - MLT1H LTR MaLR 0 549 9 238 299 83 35 chr1 281012391 281012535 -1181129 - MIR SINE MIR -109 153 3 265 290 0 0 chr1 281012999 281013061 -1180603 + MER21B LTR ERV1 568 629 -234 5627 249 142 25 chr1 281013062 281015607 -1178057 - L1M4 LINE L1 -859 5785 2945 1259 255 66 53 chr1 281015625 281016189 -1177475 - L1M4 LINE L1 -5359 1183 613 406 348 57 0 chr1 281016285 281016532 -1177132 - L1M4 LINE L1 -6280 262 2 * 1457 258 29 16 chr1 281016531 281017081 -1176583 - L1M4 LINE L1 -1315 4831 4275 2269 99 3 0 chr1 281017138 281017431 -1176233 - AluSq SINE Alu -19 294 1 1329 255 95 16 chr1 281017438 281017492 -1176172 - L1MCa LINE L1 -5859 567 519 194 57 57 0 chr1 281017492 281017527 -1176137 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1329 255 95 16 chr1 281017527 281017966 -1175698 - L1MCa LINE L1 -5907 519 35 581 313 34 10 chr1 281018898 281019106 -1174558 + HERVI LTR ERV1 776 988 -6797 770 303 42 26 chr1 281019314 281019697 -1173967 + HERVI LTR ERV1 954 1640 -5307 582 239 117 16 chr1 281019832 281020079 -1173585 + L1MB2 LINE L1 2551 2822 -3324 411 190 98 92 chr1 281020100 281020142 -1173522 + L1MB2 LINE L1 4519 4559 -1587 2569 56 0 7 chr1 281020142 281020446 -1173218 + AluY SINE Alu 1 302 -9 411 190 98 92 chr1 281020446 281020587 -1173077 + L1MB2 LINE L1 4559 4703 -1443 493 225 108 39 chr1 281020593 281020722 -1172942 + FLAM_C SINE Alu 5 142 -1 2983 256 75 15 chr1 281020740 281021484 -1172180 + L1MB2 LINE L1 4693 5391 -780 2016 141 0 3 chr1 281021484 281021775 -1171889 + AluSx SINE Alu 1 290 -22 2983 256 75 15 chr1 281021775 281022380 -1171284 + L1MB2 LINE L1 5391 6129 -42 556 183 0 0 chr1 281022365 281022469 -1171195 + L1MA9 LINE L1 5387 5490 -801 * 382 221 77 0 chr1 281022467 281022571 -1171093 + L1PB4 LINE L1 6045 6156 0 * 484 179 80 0 chr1 281022585 281022697 -1170967 + L1MB2 LINE L1 5775 5895 -276 * 2816 201 32 16 chr1 281022693 281023377 -1170287 + L1MA9 LINE L1 5492 6287 -25 2331 82 126 6 chr1 281023577 281023894 -1169770 + THE1A LTR MaLR 1 355 0 298 306 184 27 chr1 281025730 281025877 -1167787 - MER5A DNA MER1_type -8 181 12 469 234 33 102 chr1 281026043 281026287 -1167377 + L1MC4 LINE L1 7281 7507 -535 2240 117 7 0 chr1 281026288 281026588 -1167076 - AluSx SINE Alu -10 302 1 267 342 68 31 chr1 281027602 281027763 -1165901 + MER5B DNA MER1_type 10 176 -2 189 361 98 15 chr1 281027779 281027912 -1165752 - MER5A DNA MER1_type -7 182 39 2236 92 7 3 chr1 281028009 281028314 -1165350 + AluSp SINE Alu 1 306 -7 182 250 42 132 chr1 281028462 281028606 -1165058 - MIR SINE MIR -5 257 127 513 235 78 12 chr1 281029510 281029676 -1163988 + MER113 DNA MER1_type? 302 478 -43 3134 192 38 48 chr1 281029742 281030147 -1163517 - L1MC3 LINE L1 0 7785 7390 920 118 0 22 chr1 281030147 281030282 -1163382 - FLAM_C SINE Alu -1 132 1 3134 192 38 48 chr1 281030282 281030668 -1162996 - L1MC3 LINE L1 -395 7390 7002 1632 144 84 63 chr1 281030759 281030922 -1162742 - THE1C LTR MaLR 0 375 217 537 16 0 0 chr1 281030922 281030984 -1162680 + (GA)n Simple_repeat Simple_repeat 1 62 0 1632 144 84 63 chr1 281030984 281031187 -1162477 - THE1C LTR MaLR -158 217 1 1640 155 7 4 chr1 281031189 281031467 -1162197 - AluJb SINE Alu -33 279 1 1612 125 73 22 chr1 281032004 281032276 -1161388 + AluJo SINE Alu 11 296 -16 2312 29 11 0 chr1 281032278 281032601 -1161063 + AluY SINE Alu 1 326 0 186 336 37 19 chr1 281032732 281032839 -1160825 + L2 LINE L2 2959 3067 -205 2250 124 35 52 chr1 281032937 281033339 -1160325 + MER48 LTR ERV1 1 395 -3 15120 110 27 10 chr1 281033342 281036389 -1157275 + HERVH48 LTR ERV1 1 3157 -3497 6160 73 40 1 chr1 281036381 281037178 -1156486 + HERVH48 LTR ERV1 5827 6654 0 * 2110 109 32 129 chr1 281037178 281037619 -1156045 + MER48 LTR ERV1 1 398 0 470 301 137 0 chr1 281037663 281037846 -1155818 + MIR SINE MIR 20 227 -35 1774 162 7 3 chr1 281039372 281039675 -1153989 - AluJb SINE Alu -6 306 3 701 208 64 102 chr1 281039704 281039969 -1153695 + LTR38B LTR ERV1 10 264 -346 1879 140 0 3 chr1 281040081 281040419 -1153245 + AluSx SINE Alu 1 337 0 264 180 0 0 chr1 281040460 281040510 -1153154 - LTR38B LTR ERV1 -552 58 9 1019 201 122 19 chr1 281040540 281040803 -1152861 + LTR38 LTR ERV1 267 556 0 1106 199 0 0 chr1 281041417 281041598 -1152066 - LTR39 LTR ERV1 -2 781 601 561 155 58 0 chr1 281041599 281041702 -1151962 + HY1 scRNA scRNA 1 109 -3 267 189 0 0 chr1 281041705 281041758 -1151906 + A-rich Low_complexity Low_complexity 1 53 0 2041 138 28 6 chr1 281041758 281042083 -1151581 - LTR39 LTR ERV1 -172 611 280 1225 231 53 31 chr1 281042094 281042454 -1151210 + MER74B LTR ERVL 181 548 -74 623 173 73 0 chr1 281043225 281043335 -1150329 + FLAM_C SINE Alu 1 118 -15 185 300 25 38 chr1 281043432 281043512 -1150152 - MIR3 SINE MIR -48 160 82 1464 155 19 70 chr1 281043821 281044137 -1149527 - AluJo SINE Alu -12 300 1 1438 191 35 3 chr1 281045092 281045380 -1148284 - AluSx SINE Alu -15 297 1 201 271 260 10 chr1 281045775 281045871 -1147793 + MIR SINE MIR 47 166 -96 1934 180 92 12 chr1 281045883 281046283 -1147381 + MLT1C LTR MaLR 2 433 -34 217 263 153 25 chr1 281048485 281048603 -1145061 - MIR SINE MIR -12 250 118 807 82 7 122 chr1 281049256 281049403 -1144261 - FLAM_C SINE Alu -10 133 4 1869 194 29 5 chr1 281049775 281050156 -1143508 + MLT1B LTR MaLR 1 390 0 677 236 62 0 chr1 281050156 281050317 -1143347 + MLT1B-int LTR MaLR 1 171 -1200 * 2847 203 26 5 chr1 281050293 281050859 -1142805 + MLT1B-int LTR MaLR 307 884 -487 365 267 10 10 chr1 281050914 281051015 -1142649 + MLT1B-int LTR MaLR 676 776 -959 1877 187 37 46 chr1 281051041 281051136 -1142528 + MLT1B-int LTR MaLR 940 1034 -337 2072 116 0 7 chr1 281051136 281051437 -1142227 - AluSq SINE Alu -14 299 1 1877 187 37 46 chr1 281051437 281051774 -1141890 + MLT1B-int LTR MaLR 1034 1368 -3 742 160 8 13 chr1 281051785 281051929 -1141735 + MLT1B LTR MaLR 7 139 -235 783 148 0 0 chr1 281051930 281052052 -1141612 + AluSg/x SINE Alu 176 297 -15 396 290 76 31 chr1 281052055 281052223 -1141441 - MIR SINE MIR -42 220 51 643 223 0 25 chr1 281052558 281052705 -1140959 + FLAM_A SINE Alu 1 144 0 329 222 63 167 chr1 281052919 281052961 -1140703 + MIR SINE MIR 19 64 -198 1982 124 3 7 chr1 281052961 281053259 -1140405 - AluSx SINE Alu -15 297 1 1957 132 26 0 chr1 281053260 281053563 -1140101 - AluSx SINE Alu -1 311 1 329 222 63 167 chr1 281053563 281053757 -1139907 + MIR SINE MIR 63 232 -30 325 284 35 18 chr1 281055034 281055203 -1138461 + (CA)n Simple_repeat Simple_repeat 1 172 0 193 267 0 0 chr1 281055473 281055518 -1138146 + L2 LINE L2 3268 3312 -1 1841 200 22 11 chr1 281057273 281057633 -1136031 - MLT1A1 LTR MaLR -1 364 1 2476 203 154 69 chr1 281057633 281057881 -1135783 - MLT1A1-int LTR MaLR 0 1735 1510 2046 121 3 0 chr1 281057881 281058179 -1135485 + AluSx SINE Alu 1 299 -13 267 54 0 0 chr1 281058179 281058216 -1135448 + (CA)n Simple_repeat Simple_repeat 2 38 0 2476 203 154 69 chr1 281058216 281059254 -1134410 - MLT1A1-int LTR MaLR -225 1510 129 1724 120 113 14 chr1 281059254 281059538 -1134126 + AluSx SINE Alu 1 312 0 2476 203 154 69 chr1 281059538 281059680 -1133984 - MLT1A1-int LTR MaLR -1606 129 1 1786 177 13 32 chr1 281059680 281060052 -1133612 - MLT1A1 LTR MaLR 0 365 1 236 304 94 20 chr1 281060451 281060652 -1133012 + L1MC/D LINE L1 5665 5880 -1928 1719 171 10 0 chr1 281060825 281061130 -1132534 - AluJo SINE Alu -4 308 1 23 54 0 0 chr1 281061203 281061240 -1132424 + AT_rich Low_complexity Low_complexity 1 37 0 1557 197 3 16 chr1 281061515 281061824 -1131840 - AluSx SINE Alu -7 305 1 207 0 0 0 chr1 281061834 281061857 -1131807 + (T)n Simple_repeat Simple_repeat 1 23 0 359 325 119 22 chr1 281061977 281062254 -1131410 + L1MC4 LINE L1 7359 7662 -380 436 261 104 22 chr1 281062257 281062525 -1131139 + L1MC4 LINE L1 7753 8042 0 256 247 104 0 chr1 281062634 281062711 -1130953 - MER5A DNA MER1_type -84 105 21 2297 138 3 5 chr1 281063084 281063467 -1130197 + L1PB1 LINE L1 5769 6150 -1 3402 105 2 40 chr1 281063475 281064028 -1129636 + L1MA1 LINE L1 5771 6302 0 5056 165 43 36 chr1 281064062 281064918 -1128746 + L1MA4A LINE L1 4736 5585 -718 207 0 0 0 chr1 281064918 281064941 -1128723 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5056 165 43 36 chr1 281064941 281065514 -1128150 + L1MA4A LINE L1 5585 6161 -142 1502 188 10 10 chr1 281065514 281065802 -1127862 + AluJb SINE Alu 1 288 -24 5056 165 43 36 chr1 281065802 281065943 -1127721 + L1MA4A LINE L1 6161 6300 -3 610 314 42 31 chr1 281065944 281066231 -1127433 + L1MEd LINE L1 921 1210 -4909 1524 142 16 66 chr1 281066244 281066562 -1127102 + AluJo SINE Alu 11 312 0 1775 114 16 35 chr1 281066653 281066970 -1126694 + AluY SINE Alu 1 311 0 230 336 52 9 chr1 281069153 281069269 -1124395 + MIR SINE MIR 112 232 -30 11084 31 7 0 chr1 281069598 281071665 -1121999 + L1PA5 LINE L1 4075 6147 -7 27 49 0 0 chr1 281072527 281072568 -1121096 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr1 281072627 281072652 -1121012 + AT_rich Low_complexity Low_complexity 1 25 0 1714 189 0 3 chr1 281072942 281073243 -1120421 - AluJo SINE Alu -7 305 6 22 0 0 0 chr1 281073582 281073604 -1120060 + AT_rich Low_complexity Low_complexity 1 22 0 2060 93 6 6 chr1 281074334 281074646 -1119018 - AluSp SINE Alu -1 312 1 1178 184 70 121 chr1 281074747 281075177 -1118487 - L1MA9 LINE L1 -10 6302 5895 305 250 158 88 chr1 281075177 281075371 -1118293 + L1MC4a LINE L1 6680 6894 -914 1982 132 0 28 chr1 281075371 281075690 -1117974 - AluSx SINE Alu -2 310 1 305 250 158 88 chr1 281075690 281075723 -1117941 + L1MC4a LINE L1 6894 6923 -885 613 213 41 0 chr1 281075741 281075863 -1117801 + FLAM_A SINE Alu 1 127 -6 2273 251 39 57 chr1 281076148 281077021 -1116643 + L1M3b LINE L1 853 1709 -4572 456 247 0 0 chr1 281077022 281077119 -1116545 + AluJ/FLAM SINE Alu 2 98 -214 99 66 0 0 chr1 281077122 281077305 -1116359 + AT_rich Low_complexity Low_complexity 1 183 0 1500 199 53 0 chr1 281077314 281077596 -1116068 + AluJo SINE Alu 1 297 -5 269 325 31 11 chr1 281077598 281077812 -1115852 + L1M4c LINE L1 1322 1916 -4467 3265 108 12 0 chr1 281077819 281078300 -1115364 - L1MA2 LINE L1 0 6304 5818 2391 64 0 0 chr1 281078306 281078602 -1115062 + L1PA3 LINE L1 5857 6152 -3 13320 177 31 13 chr1 281078614 281079038 -1114626 - L1MA2 LINE L1 -473 5829 5414 2598 62 3 0 chr1 281079038 281079347 -1114317 - AluY SINE Alu -1 310 1 13320 177 31 13 chr1 281079347 281080422 -1113242 - L1MA2 LINE L1 -888 5414 4360 2368 97 0 3 chr1 281080422 281080730 -1112934 - AluY SINE Alu -4 307 1 13320 177 31 13 chr1 281080730 281082637 -1111027 - L1MA2 LINE L1 -1942 4360 2357 2233 158 87 5 chr1 281083495 281083888 -1109776 + MSTB LTR MaLR 2 426 0 2749 184 24 14 chr1 281084095 281084681 -1108983 - L1MA7 LINE L1 -10 6281 5690 475 210 98 59 chr1 281084682 281084872 -1108792 - L1MA7 LINE L1 -566 5588 5469 2455 63 0 0 chr1 281085136 281085423 -1108241 - AluY SINE Alu -11 300 14 24 0 0 0 chr1 281085610 281085634 -1108030 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr1 281085676 281085715 -1107949 + AT_rich Low_complexity Low_complexity 1 39 0 860 112 0 26 chr1 281085786 281085902 -1107762 + FLAM_C SINE Alu 15 127 -16 24 0 0 0 chr1 281085906 281085930 -1107734 + AT_rich Low_complexity Low_complexity 1 24 0 2193 130 3 0 chr1 281085999 281086299 -1107365 + AluSx SINE Alu 1 301 -11 1661 165 216 3 chr1 281087346 281087697 -1105967 + MSTC LTR MaLR 1 426 -2 649 104 73 0 chr1 281087944 281088040 -1105624 - AluSp/q SINE Alu -14 299 197 1683 149 7 45 chr1 281088159 281088467 -1105197 - AluSx SINE Alu -16 296 1 207 69 0 0 chr1 281088757 281088786 -1104878 + (TG)n Simple_repeat Simple_repeat 2 30 0 652 322 77 58 chr1 281088823 281089354 -1104310 - L1MEd LINE L1 -4886 1233 693 715 208 0 8 chr1 281089432 281089562 -1104102 + FLAM_A SINE Alu 5 133 0 268 320 40 0 chr1 281089570 281089695 -1103969 - L1MEd LINE L1 -5495 624 495 371 390 63 17 chr1 281089759 281090059 -1103605 - L1MEd LINE L1 -5737 382 69 3393 204 50 19 chr1 281090060 281090813 -1102851 + L1PA16 LINE L1 5151 5931 -240 2101 103 7 17 chr1 281090813 281091105 -1102559 + AluSq SINE Alu 1 289 -24 3393 204 50 19 chr1 281091105 281091352 -1102312 + L1PA16 LINE L1 5931 6169 -2 2075 151 0 3 chr1 281091811 281092115 -1101549 + AluJo SINE Alu 1 303 -9 619 219 15 44 chr1 281093447 281093584 -1100080 + FLAM_A SINE Alu 1 133 0 1432 172 153 8 chr1 281093646 281093908 -1099756 + AluJo SINE Alu 3 302 0 1631 303 47 36 chr1 281093934 281094320 -1099344 + L1MA8 LINE L1 5800 6192 -99 806 142 24 0 chr1 281094320 281094447 -1099217 - FLAM_A SINE Alu -3 130 1 1631 303 47 36 chr1 281094447 281094545 -1099119 + L1MA8 LINE L1 6192 6287 -4 1089 156 113 32 chr1 281095165 281095447 -1098217 - L1MA9 LINE L1 -3 6309 6005 805 120 0 0 chr1 281095457 281095565 -1098099 - FLAM_A SINE Alu -15 127 20 417 96 0 0 chr1 281095750 281095802 -1097862 + Alu SINE Alu 2 53 -258 225 154 0 0 chr1 281095802 281095841 -1097823 + (TA)n Simple_repeat Simple_repeat 2 40 0 323 356 0 0 chr1 281095852 281095942 -1097722 + L1MC4 LINE L1 6614 6703 -1339 * 392 301 0 0 chr1 281095864 281095957 -1097707 - L1MC4 LINE L1 -1339 6703 6611 192 327 59 20 chr1 281096046 281096147 -1097517 - L3 LINE CR1 -105 1472 1368 1377 124 0 30 chr1 281096428 281096662 -1097002 + MLT1B LTR MaLR 1 227 -163 2346 103 3 0 chr1 281096853 281097154 -1096510 - AluSq SINE Alu -11 302 1 929 129 0 0 chr1 281097211 281097351 -1096313 + MLT1B LTR MaLR 235 374 -16 405 294 44 0 chr1 281097743 281097879 -1095785 - MIR SINE MIR -37 225 84 21 82 0 0 chr1 281100814 281100863 -1092801 + GC_rich Low_complexity Low_complexity 1 49 0 38 61 0 0 chr1 281101505 281101571 -1092093 + GC_rich Low_complexity Low_complexity 1 66 0 33 56 0 0 chr1 281101787 281101841 -1091823 + GC_rich Low_complexity Low_complexity 1 54 0 582 276 53 6 chr1 281103547 281103717 -1089947 + MIR SINE MIR 11 188 -74 256 260 177 101 chr1 281103718 281103995 -1089669 - L2 LINE L2 0 3313 3016 409 250 193 9 chr1 281104381 281104593 -1089071 - L2 LINE L2 -124 3189 2939 192 282 176 72 chr1 281104649 281105519 -1088145 - L2 LINE L2 -554 2760 1801 1399 192 97 15 chr1 281105729 281106165 -1087499 + MLT2D LTR ERVL 1 464 0 187 310 70 10 chr1 281106165 281106265 -1087399 - L2 LINE L2 -1925 1389 1284 266 73 24 0 chr1 281107265 281107306 -1086358 + (GGA)n Simple_repeat Simple_repeat 1 42 0 2180 203 22 7 chr1 281107316 281107770 -1085894 + MER88 LTR ERVL 1 461 -3 2303 77 11 0 chr1 281108140 281108455 -1085209 - AluSg SINE Alu 0 310 1 1894 148 41 14 chr1 281109018 281109308 -1084356 + AluJo SINE Alu 1 298 -14 2555 202 36 18 chr1 281110414 281110920 -1082744 + MLT2B2 LTR ERVL 1 515 0 1876 174 13 3 chr1 281111008 281111312 -1082352 - AluJb SINE Alu -5 307 1 676 239 135 46 chr1 281111462 281111855 -1081809 + MLT1C LTR MaLR 1 460 -7 2411 82 0 0 chr1 281112042 281112335 -1081329 - AluY SINE Alu -18 293 1 496 223 136 0 chr1 281112338 281112441 -1081223 - FLAM_A SINE Alu -13 129 13 2912 142 66 70 chr1 281112838 281113013 -1080651 - MER39B LTR ERV1 -1 652 478 2384 97 0 3 chr1 281113013 281113312 -1080352 - AluSg SINE Alu -11 299 2 2912 142 66 70 chr1 281113312 281113789 -1079875 - MER39B LTR ERV1 -175 478 3 2135 127 7 7 chr1 281114050 281114350 -1079314 - AluSx SINE Alu -12 300 1 1367 210 65 7 chr1 281114777 281114946 -1078718 + AluJo SINE Alu 1 196 -116 2274 119 3 0 chr1 281114946 281115241 -1078423 - AluSx SINE Alu -16 296 1 1367 210 65 7 chr1 281115241 281115362 -1078302 + AluJo SINE Alu 196 308 -4 240 139 47 0 chr1 281115507 281115550 -1078114 + Tigger4(Zombi) DNA MER2_type 74 118 -2613 281 212 0 0 chr1 281115560 281115626 -1078038 + Tigger4(Zombi) DNA MER2_type 2532 2597 -134 288 190 59 45 chr1 281115626 281115879 -1077785 + AluJo SINE Alu 1 295 -7 * 823 164 0 0 chr1 281115869 281116015 -1077649 + Tigger4(Zombi) DNA MER2_type 2586 2731 0 1271 183 121 7 chr1 281116015 281116305 -1077359 - MLT1A1 LTR MaLR -32 333 11 1820 161 3 16 chr1 281116338 281116642 -1077022 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr1 281116762 281116783 -1076881 + GC_rich Low_complexity Low_complexity 1 21 0 2524 82 0 0 chr1 281118179 281118483 -1075181 - AluSg SINE Alu -6 304 1 548 176 0 0 chr1 281118709 281118800 -1074864 - MER41A LTR ERV1 0 554 464 837 138 14 0 chr1 281118895 281119033 -1074631 - LTR49-int LTR ERV1 -2996 3335 3196 2185 128 0 3 chr1 281119033 281119331 -1074333 + AluJb SINE Alu 1 297 -15 1538 193 0 52 chr1 281119506 281119540 -1074124 + AluJo SINE Alu 1 35 -277 2217 127 36 33 chr1 281119540 281119903 -1073761 + THE1B LTR MaLR 1 364 0 1538 193 0 52 chr1 281119903 281120195 -1073469 + AluJo SINE Alu 35 310 -2 926 128 105 102 chr1 281120195 281120322 -1073342 - LTR49-int LTR ERV1 -3446 2885 2760 2186 140 0 13 chr1 281120322 281120499 -1073165 - AluSx SINE Alu -2 310 137 2268 115 0 19 chr1 281120499 281120813 -1072851 - AluSg SINE Alu -2 308 1 2186 140 0 13 chr1 281120813 281120949 -1072715 - AluSx SINE Alu -175 137 1 926 128 105 102 chr1 281120949 281121087 -1072577 - LTR49-int LTR ERV1 -3571 2760 2619 1022 203 0 20 chr1 281121165 281121362 -1072302 - LTR49-int LTR ERV1 -3695 2636 2444 903 277 27 22 chr1 281121471 281121764 -1071900 - LTR49-int LTR ERV1 -3985 2346 2076 1460 150 30 9 chr1 281121764 281121997 -1071667 + AluJb SINE Alu 1 238 -74 1577 215 129 92 chr1 281121999 281122706 -1070958 + LTR1B LTR ERV1 3 735 -91 2347 125 0 0 chr1 281123022 281123334 -1070330 + AluSx SINE Alu 1 312 0 543 313 34 10 chr1 281124092 281124300 -1069364 + Harlequin LTR ERV1 776 988 -6797 1440 316 51 45 chr1 281124508 281126115 -1067549 + Harlequin LTR ERV1 954 2991 -4558 1957 122 35 14 chr1 281126115 281126402 -1067262 - AluSq SINE Alu -20 293 1 1965 122 3 48 chr1 281126414 281126750 -1066914 - LTR19C LTR ERV1 -364 415 95 916 349 25 8 chr1 281126803 281127290 -1066374 + Harlequin LTR ERV1 5269 5763 -2022 351 293 8 8 chr1 281127501 281127626 -1066038 + Harlequin LTR ERV1 3029 4857 -1792 1605 323 34 53 chr1 281128019 281129252 -1064412 + Harlequin LTR ERV1 6439 7647 -138 295 190 0 0 chr1 281129888 281129946 -1063718 + AluJb SINE Alu 238 295 -7 1819 194 28 58 chr1 281129947 281130379 -1063285 - LTR49-int LTR ERV1 -4243 2088 1670 296 269 10 29 chr1 281130965 281131069 -1062595 - LTR49-int LTR ERV1 -4940 1391 1290 302 269 15 0 chr1 281131130 281131197 -1062467 - tRNA-Glu-GAG tRNA tRNA 0 75 8 255 240 0 0 chr1 281131206 281131256 -1062408 - LTR49-int LTR ERV1 -5129 1202 1153 346 237 4 81 chr1 281131257 281131394 -1062270 - L1MC4 LINE L1 -1339 6983 1948 950 148 12 18 chr1 281131516 281131685 -1061979 - AluSx SINE Alu -142 170 3 2126 80 0 4 chr1 281131899 281132163 -1061501 + AluSg SINE Alu 1 263 -47 203 30 0 61 chr1 281132164 281132197 -1061467 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 382 143 0 0 chr1 281132220 281132283 -1061381 + AluS SINE Alu 14 76 -227 753 126 0 0 chr1 281132289 281132400 -1061264 + AluSg/x SINE Alu 190 300 -9 3640 117 15 0 chr1 281132518 281133064 -1060600 + MER41A LTR ERV1 1 554 0 564 202 0 0 chr1 281133551 281133665 -1059999 - AluSg/x SINE Alu 0 301 188 2002 133 75 6 chr1 281133667 281134028 -1059636 + LTR23 LTR ERV1 41 426 -11 482 229 33 49 chr1 281134184 281134281 -1059383 + L1MB1 LINE L1 5730 5824 -344 2526 48 3 0 chr1 281134281 281134573 -1059091 + AluY SINE Alu 1 293 -18 482 229 33 49 chr1 281134573 281134658 -1059006 + L1MB1 LINE L1 5824 5909 -259 2242 105 3 0 chr1 281134658 281134953 -1058711 + AluSc SINE Alu 1 296 -13 671 149 43 21 chr1 281134965 281135106 -1058558 + LTR48B LTR ERV1 501 644 0 831 251 19 33 chr1 281135108 281135232 -1058432 + LTR48B-int LTR ERV1 1 122 -6209 4859 54 3 0 chr1 281135232 281135821 -1057843 + LTR10C LTR ERV1 1 591 0 831 251 19 33 chr1 281135821 281135911 -1057753 + LTR48B-int LTR ERV1 122 212 -6119 641 202 0 0 chr1 281135928 281136037 -1057627 - AluJb SINE Alu -43 269 161 960 153 32 37 chr1 281136171 281136286 -1057378 - AluJo SINE Alu -123 189 74 3699 161 11 11 chr1 281136286 281136921 -1056743 - MER41B LTR ERV1 0 635 1 960 153 32 37 chr1 281136921 281136995 -1056669 - AluJo SINE Alu -238 74 1 2051 174 70 101 chr1 281136996 281137291 -1056373 + LTR48B-int LTR ERV1 199 502 -5829 2661 101 3 3 chr1 281137291 281137646 -1056018 - THE1A LTR MaLR 0 355 1 11632 90 23 8 chr1 281137646 281138961 -1054703 - THE1A-int LTR MaLR 0 1580 237 1938 120 0 0 chr1 281138961 281139227 -1054437 + AluSx SINE Alu 1 266 -46 11632 90 23 8 chr1 281139227 281139468 -1054196 - THE1A-int LTR MaLR -1343 237 1 2765 82 3 3 chr1 281139468 281139823 -1053841 - THE1A LTR MaLR 0 355 1 2051 174 70 101 chr1 281139823 281140120 -1053544 + LTR48B-int LTR ERV1 500 774 -5557 2227 103 7 7 chr1 281140120 281140412 -1053252 - AluSx SINE Alu -20 292 1 2051 174 70 101 chr1 281140412 281140458 -1053206 + LTR48B-int LTR ERV1 774 820 -5511 2359 78 0 0 chr1 281140480 281140792 -1052872 - AluY SINE Alu 0 312 1 842 149 77 189 chr1 281140917 281141035 -1052629 - L1 LINE L1 -985 5161 5031 1817 184 3 16 chr1 281141035 281141350 -1052314 - AluJo SINE Alu -1 311 1 842 149 77 189 chr1 281141350 281141660 -1052004 - L1 LINE L1 -1115 5031 4781 883 104 0 15 chr1 281141708 281141842 -1051822 - FLAM_C SINE Alu 0 133 2 2221 112 0 14 chr1 281141913 281142208 -1051456 - AluSg SINE Alu -17 293 3 280 321 18 18 chr1 281142428 281142537 -1051127 - MIR SINE MIR -6 256 148 212 237 153 0 chr1 281142659 281142718 -1050946 - MIR SINE MIR -100 162 95 187 265 0 0 chr1 281144337 281144371 -1049293 - L2 LINE L2 -99 3173 3140 550 313 71 5 chr1 281144501 281144699 -1048965 + MIR SINE MIR 51 261 -1 1992 87 8 15 chr1 281144744 281145043 -1048621 - AluSp SINE Alu 0 318 22 290 281 50 66 chr1 281145259 281145380 -1048284 - MIR3 SINE MIR -5 203 85 2229 116 0 0 chr1 281145586 281145880 -1047784 - AluSx SINE Alu -18 294 1 4219 191 35 18 chr1 281146374 281146399 -1047265 - L1MB2 LINE L1 -22 6149 6126 189 0 0 0 chr1 281146399 281146420 -1047244 + (TA)n Simple_repeat Simple_repeat 2 22 0 2353 62 10 7 chr1 281146420 281146710 -1046954 - AluSp SINE Alu -22 291 1 4219 191 35 18 chr1 281146710 281147687 -1045977 - L1MB2 LINE L1 -45 6126 5126 2170 116 3 10 chr1 281147687 281147981 -1045683 + AluSq SINE Alu 1 292 -21 4219 191 35 18 chr1 281147981 281148011 -1045653 - L1MB2 LINE L1 -1045 5126 5098 820 150 0 0 chr1 281148602 281148722 -1044942 + FLAM_A SINE Alu 8 127 -15 347 345 63 15 chr1 281148791 281148997 -1044667 - MIR SINE MIR -38 224 9 808 205 7 0 chr1 281149120 281149271 -1044393 + FRAM SINE Alu 12 163 -13 2154 144 0 0 chr1 281149352 281149650 -1044014 + AluJo SINE Alu 1 298 -14 530 267 35 17 chr1 281149796 281149968 -1043696 + MER5B DNA MER1_type 3 177 -1 1781 183 26 9 chr1 281154249 281154593 -1039071 - MLT1A1 LTR MaLR -13 352 3 229 328 31 0 chr1 281155633 281155697 -1037967 + MER5A DNA MER1_type 47 112 -77 649 214 16 0 chr1 281155742 281155868 -1037796 + AluJo SINE Alu 5 132 -180 912 163 21 0 chr1 281155912 281156053 -1037611 + AluJo SINE Alu 117 260 -52 200 242 63 53 chr1 281156055 281156150 -1037514 - MER5B DNA MER1_type -32 146 51 226 152 0 0 chr1 281156153 281156199 -1037465 - Alu SINE Alu 0 300 255 2500 198 50 57 chr1 281156310 281156410 -1037254 + LTR8A LTR ERV1 35 134 -593 4696 125 14 13 chr1 281156410 281157100 -1036564 + LTR8 LTR ERV1 1 691 0 2500 198 50 57 chr1 281157100 281157697 -1035967 + LTR8A LTR ERV1 134 727 0 294 287 98 0 chr1 281157813 281157935 -1035729 + MIR SINE MIR 72 205 -57 555 90 0 0 chr1 281158107 281158185 -1035479 + L1PA5 LINE L1 6073 6150 -4 194 284 0 45 chr1 281158216 281158283 -1035381 + MIR SINE MIR 121 184 -78 2065 222 67 67 chr1 281158284 281159028 -1034636 + MER21B LTR ERV1 1 744 -119 4387 80 4 0 chr1 281159080 281159632 -1034032 - MER41A LTR ERV1 0 554 1 564 172 17 0 chr1 281159864 281159980 -1033684 + MLT1B LTR MaLR 154 271 -119 232 329 80 44 chr1 281160509 281160646 -1033018 - L2 LINE L2 -18 3254 3113 2179 109 26 0 chr1 281160733 281161037 -1032627 - AluSx SINE Alu 0 312 1 2890 128 14 0 chr1 281161218 281161640 -1032024 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr1 281161825 281161848 -1031816 + AT_rich Low_complexity Low_complexity 1 23 0 527 125 37 59 chr1 281161848 281161984 -1031680 - L1MA7 LINE L1 0 6291 6159 1214 194 74 56 chr1 281162006 281162290 -1031374 - AluJo SINE Alu -13 289 1 2121 121 7 0 chr1 281162314 281162626 -1031038 - AluSq SINE Alu 0 314 1 19198 96 16 41 chr1 281162629 281163471 -1030193 - HUERS-P1 LTR ERV1 -3326 2937 2076 2194 118 3 3 chr1 281163471 281163775 -1029889 + AluSg SINE Alu 3 306 -4 19198 96 16 41 chr1 281163775 281164192 -1029472 - HUERS-P1 LTR ERV1 -4187 2076 1650 2381 88 3 7 chr1 281164192 281164500 -1029164 + AluSp SINE Alu 1 307 -6 19198 96 16 41 chr1 281164500 281166251 -1027413 - HUERS-P1 LTR ERV1 -4613 1650 1 4918 111 15 4 chr1 281166251 281166935 -1026729 - LTR8 LTR ERV1 0 691 1 245 164 82 0 chr1 281167205 281167266 -1026398 - L1MA7 LINE L1 -4 6287 6222 699 209 8 15 chr1 281167318 281167452 -1026212 + FLAM_A SINE Alu 1 133 0 2288 123 3 0 chr1 281167509 281167819 -1025845 + AluSx SINE Alu 1 311 -1 813 196 42 80 chr1 281167907 281168054 -1025610 + Charlie1b DNA MER1_type 6 157 -2604 1627 208 13 0 chr1 281168054 281168352 -1025312 - AluJo SINE Alu -10 302 1 813 196 42 80 chr1 281168352 281168630 -1025034 + Charlie1b DNA MER1_type 157 523 0 242 263 66 40 chr1 281168669 281168745 -1024919 + MIR3 SINE MIR 109 186 -22 1879 205 148 0 chr1 281169006 281169177 -1024487 - MLT2B2 LTR ERVL -11 504 360 5080 96 0 24 chr1 281169177 281169735 -1023929 - LTR8 LTR ERV1 0 691 152 2489 74 0 0 chr1 281169735 281170034 -1023630 + AluY SINE Alu 1 299 -12 5080 96 0 24 chr1 281170034 281170183 -1023481 - LTR8 LTR ERV1 -539 152 1 1879 205 148 0 chr1 281170183 281170450 -1023214 - MLT2B2 LTR ERVL -155 360 1 193 247 62 37 chr1 281170594 281170675 -1022989 - L3 LINE CR1 -17 1560 1478 1425 178 3 99 chr1 281170937 281170978 -1022686 - MLT1A1 LTR MaLR -24 341 298 1733 189 7 3 chr1 281170978 281171279 -1022385 - AluJo SINE Alu -10 302 1 1425 178 3 99 chr1 281171279 281171602 -1022062 - MLT1A1 LTR MaLR -67 298 12 21 0 0 0 chr1 281172128 281172149 -1021515 + AT_rich Low_complexity Low_complexity 1 21 0 1658 181 0 38 chr1 281172402 281172716 -1020948 - AluJo SINE Alu -10 302 1 671 233 45 45 chr1 281172726 281172747 -1020917 - MER31B LTR ERV1 -2 464 444 1696 163 14 21 chr1 281172747 281173036 -1020628 + AluJb SINE Alu 3 289 -23 671 233 45 45 chr1 281173036 281173237 -1020427 - MER31B LTR ERV1 -21 445 242 2323 192 17 2 chr1 281173259 281173722 -1019942 + MER31A LTR ERV1 16 485 0 1306 174 7 36 chr1 281173722 281173995 -1019669 - MER31B LTR ERV1 -201 265 1 1749 178 31 13 chr1 281174859 281175213 -1018451 - MLT1A1 LTR MaLR 0 365 4 1826 202 14 11 chr1 281175342 281175699 -1017965 - MLT1A1 LTR MaLR -7 358 1 716 157 9 0 chr1 281175990 281176105 -1017559 + AluJo/FLAM SINE Alu 1 116 -196 1272 109 0 0 chr1 281176106 281176351 -1017313 - AluSc SINE Alu 0 374 130 879 213 102 55 chr1 281176452 281176795 -1016869 - MLT1D LTR MaLR -54 451 93 902 204 5 41 chr1 281176818 281177039 -1016625 - MSTD LTR MaLR 0 396 184 838 230 0 0 chr1 281177039 281177204 -1016460 - FRAM SINE Alu 0 40 1 624 98 0 0 chr1 281177204 281177286 -1016378 - AluJ/FLAM SINE Alu -222 90 9 912 200 0 11 chr1 281177286 281177471 -1016193 - MSTD LTR MaLR -213 183 1 224 328 0 34 chr1 281177471 281177590 -1016074 + (CACGC)n Simple_repeat Simple_repeat 5 119 0 311 321 0 38 chr1 281177614 281177798 -1015866 + (CACGC)n Simple_repeat Simple_repeat 3 179 0 309 319 0 43 chr1 281177906 281178091 -1015573 + (CACGT)n Simple_repeat Simple_repeat 3 179 0 244 276 0 26 chr1 281178116 281178192 -1015472 - MLT1D LTR MaLR -548 78 5 506 247 65 9 chr1 281178406 281178658 -1015006 + Charlie4a DNA MER1_type 17 313 -195 241 273 13 0 chr1 281178684 281178761 -1014903 + Charlie4a DNA MER1_type 387 464 -44 1541 219 27 44 chr1 281179675 281180096 -1013568 - L1MB2 LINE L1 -62 6109 5693 414 214 114 60 chr1 281180321 281180522 -1013142 - Charlie8 DNA MER1_type -2141 276 65 2173 109 3 0 chr1 281180760 281181071 -1012593 + AluSx SINE Alu 1 312 0 1031 222 66 66 chr1 281181920 281182240 -1011424 - MLT1A1 LTR MaLR 0 365 46 21 0 0 0 chr1 281182241 281182262 -1011402 + AT_rich Low_complexity Low_complexity 1 21 0 794 185 7 13 chr1 281182267 281182418 -1011246 - AluJb SINE Alu -8 304 155 22 0 0 0 chr1 281182666 281182688 -1010976 + AT_rich Low_complexity Low_complexity 1 22 0 1723 150 4 4 chr1 281182880 281183160 -1010504 - AluJo SINE Alu -23 289 10 701 284 94 38 chr1 281183466 281183892 -1009772 + L1ME1 LINE L1 5698 6147 -19 * 4695 182 47 29 chr1 281183883 281184188 -1009476 - L1MA9 LINE L1 -38 6274 5976 1473 146 0 113 chr1 281184188 281184516 -1009148 - AluJb SINE Alu -21 291 1 4695 182 47 29 chr1 281184516 281185363 -1008301 - L1MA9 LINE L1 -336 5976 5097 1122 286 101 73 chr1 281185608 281185849 -1007815 - HAL1 LINE L1 -710 1797 1564 968 114 0 0 chr1 281185849 281185981 -1007683 - FLAM_C SINE Alu 0 133 2 1122 286 101 73 chr1 281185981 281186351 -1007313 - HAL1 LINE L1 -943 1564 1206 2248 68 0 3 chr1 281186351 281186645 -1007019 + AluY SINE Alu 19 311 0 1122 286 101 73 chr1 281186645 281187156 -1006508 - HAL1 LINE L1 -1301 1206 642 1486 168 39 4 chr1 281187205 281187376 -1006288 - AluJb SINE Alu -12 300 114 228 86 0 0 chr1 281187376 281187411 -1006253 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1486 168 39 4 chr1 281187411 281187519 -1006145 - AluJb SINE Alu -198 114 11 1466 122 4 35 chr1 281188096 281188325 -1005339 + Tigger2a DNA MER2_type 1 222 -212 245 264 100 9 chr1 281188427 281188537 -1005127 + L1ME LINE L1 5688 5807 -314 2018 198 55 40 chr1 281188646 281189101 -1004563 + MLT1C LTR MaLR 1 462 -5 709 87 17 0 chr1 281189266 281189381 -1004283 + (TGGA)n Simple_repeat Simple_repeat 1 117 0 2103 120 3 0 chr1 281189657 281189957 -1003707 + AluSx SINE Alu 4 304 -8 210 301 90 19 chr1 281189993 281190149 -1003515 - L2 LINE L2 -1216 2098 1932 387 174 18 73 chr1 281190167 281190276 -1003388 + MLT1E2 LTR MaLR 507 609 -17 373 302 169 17 chr1 281190402 281190703 -1002961 + L2 LINE L2 2922 3268 -45 260 344 186 18 chr1 281190946 281191231 -1002433 + L3 LINE CR1 559 891 -686 327 351 35 6 chr1 281191299 281191470 -1002194 + MIR SINE MIR 64 239 -23 330 309 148 34 chr1 281191527 281191763 -1001901 + L3 LINE CR1 921 1183 -394 1124 118 38 16 chr1 281192020 281192206 -1001458 - AluJb SINE Alu -40 272 83 927 111 0 0 chr1 281192275 281192435 -1001229 + AluY SINE Alu 154 311 0 187 244 51 13 chr1 281192681 281192759 -1000905 + L2 LINE L2 2550 2630 -684 235 306 14 0 chr1 281192884 281192956 -1000708 + L2 LINE L2 2633 2705 -609 2051 150 20 50 chr1 281193031 281193127 -1000537 - L1PB4 LINE L1 -4 6152 6055 1949 102 51 0 chr1 281193127 281193402 -1000262 - AluSg SINE Alu -21 289 1 2051 150 20 50 chr1 281193402 281193704 -999960 - L1PB4 LINE L1 -101 6055 5766 207 171 0 0 chr1 281194037 281194072 -999592 + (TGG)n Simple_repeat Simple_repeat 1 35 0 1302 154 0 98 chr1 281194139 281194454 -999210 + AluJo SINE Alu 24 310 0 748 171 20 75 chr1 281246372 281246571 -947093 + MER53 DNA DNA 2 189 0 1252 125 14 36 chr1 281246926 281247192 -946472 - MER39B LTR ERV1 -155 552 252 2505 65 0 0 chr1 281247317 281247623 -946041 + AluY SINE Alu 1 306 -5 198 340 78 35 chr1 281248140 281248281 -945383 - L2 LINE L2 -191 3081 2935 3593 131 52 19 chr1 281248555 281249187 -944477 - MER39B LTR ERV1 0 653 1 333 301 72 82 chr1 281249538 281249731 -943933 - L1M4 LINE L1 -1438 4708 4515 2241 96 0 0 chr1 281249731 281250013 -943651 - AluSg SINE Alu -26 284 3 333 301 72 82 chr1 281250013 281250401 -943263 - L1M4 LINE L1 -1631 4515 4133 987 184 0 0 chr1 281250568 281250726 -942938 - FAM SINE Alu -17 158 1 498 278 41 25 chr1 281250731 281250976 -942688 - L1M4 LINE L1 -2185 3961 3713 21 36 0 0 chr1 281250992 281251020 -942644 + AT_rich Low_complexity Low_complexity 1 28 0 386 301 93 67 chr1 281251358 281251776 -941888 - L1M4 LINE L1 -2982 3164 2736 216 0 0 0 chr1 281253453 281253477 -940187 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 501 347 46 21 chr1 281253730 281254015 -939649 + L2 LINE L2 2668 2959 -355 258 277 58 29 chr1 281255351 281255366 -938298 - L1MA10 LINE L1 -3 6331 6317 655 176 293 16 chr1 281255366 281255554 -938110 - L1ME1 LINE L1 -6 6160 5921 406 294 132 23 chr1 281255561 281255826 -937838 - L1M4 LINE L1 -3002 3144 2851 21 0 0 0 chr1 281255840 281255861 -937803 + AT_rich Low_complexity Low_complexity 1 21 0 209 296 25 12 chr1 281255926 281256007 -937657 + MIR SINE MIR 77 158 -104 2080 184 5 8 chr1 281256582 281256969 -936695 - MLT1B LTR MaLR 0 390 5 977 173 34 42 chr1 281257557 281257794 -935870 - L1MA9 LINE L1 0 6312 6078 1828 179 0 3 chr1 281257903 281258215 -935449 - AluSx SINE Alu -1 311 1 1603 148 0 7 chr1 281258227 281258517 -935147 - L1MA4 LINE L1 -13 6287 6000 2762 168 9 26 chr1 281258812 281259347 -934317 - LTR39 LTR ERV1 0 783 258 693 187 36 0 chr1 281259346 281259485 -934179 - LTR39 LTR ERV1 -635 148 5 * 2036 118 3 40 chr1 281259788 281260109 -933555 - AluSc SINE Alu 0 309 1 2189 110 0 3 chr1 281260901 281261193 -932471 - AluSg SINE Alu -19 291 1 715 172 8 8 chr1 281261237 281261365 -932299 + FLAM_A SINE Alu 10 137 -5 1034 172 23 27 chr1 281261494 281261715 -931949 - L1MA9 LINE L1 -5 6307 6088 1737 167 12 3 chr1 281261715 281262039 -931625 + L1P LINE L1 4877 5203 -943 23 0 0 0 chr1 281263501 281263524 -930140 + AT_rich Low_complexity Low_complexity 1 23 0 7537 28 3 1 chr1 281263647 281265284 -928380 + L1PA3 LINE L1 4517 6155 0 1521 251 16 51 chr1 281265720 281266214 -927450 + MLT1D LTR MaLR 1 477 -28 28 79 0 0 chr1 281266265 281266328 -927336 + AT_rich Low_complexity Low_complexity 1 63 0 43187 30 21 1 chr1 281266811 281272842 -920822 - L1HS LINE L1 0 6155 2 1539 138 52 13 chr1 281272877 281273182 -920482 - L1MA4 LINE L1 -8 6292 5976 3895 229 99 26 chr1 281273204 281276504 -917160 + L1MA8 LINE L1 2488 6122 -169 192 40 0 0 chr1 281276637 281276662 -917002 + (TG)n Simple_repeat Simple_repeat 2 26 0 502 274 83 37 chr1 281277232 281277627 -916037 + L1MDa LINE L1 1615 2081 -4561 180 111 0 0 chr1 281277926 281277953 -915711 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 251 278 66 20 chr1 281278149 281278300 -915364 + L1MDa LINE L1 2677 2834 -3706 492 288 85 0 chr1 281278459 281278636 -915028 - LTR50 LTR ERVL -582 213 22 724 245 60 118 chr1 281279506 281279886 -913778 + MER57A LTR ERV1 46 403 0 360 0 0 0 chr1 281280489 281280529 -913135 + (CA)n Simple_repeat Simple_repeat 1 40 0 517 225 18 0 chr1 281281098 281281209 -912455 + MER81 DNA DNA 1 113 -1 234 412 0 8 chr1 281281769 281281900 -911764 + MIR SINE MIR 28 157 -105 2282 80 7 0 chr1 281281904 281282193 -911471 - AluSp SINE Alu -22 291 1 1706 154 55 0 chr1 281282746 281283039 -910625 - AluJb SINE Alu -3 309 1 21 71 0 0 chr1 281283533 281283575 -910089 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 281283598 281283620 -910044 + AT_rich Low_complexity Low_complexity 1 22 0 290 283 59 53 chr1 281283744 281283896 -909768 - MIR SINE MIR 0 262 110 291 395 53 8 chr1 281285174 281285417 -908247 + MIR SINE MIR 5 258 -4 655 181 15 30 chr1 281285844 281285977 -907687 + FLAM_C SINE Alu 3 133 0 216 200 0 0 chr1 281286609 281286654 -907010 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 242 337 31 51 chr1 281288527 281288723 -904941 - MLT1J LTR MaLR -85 426 235 234 88 0 0 chr1 281289199 281289233 -904431 + L1M1 LINE L1 5745 5778 -526 268 232 33 39 chr1 281289271 281289452 -904212 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 * 309 241 29 23 chr1 281289347 281289521 -904143 + (TA)n Simple_repeat Simple_repeat 2 176 0 282 312 0 0 chr1 281289645 281289722 -903942 + (CATA)n Simple_repeat Simple_repeat 3 79 0 661 207 45 28 chr1 281290070 281290249 -903415 - L1MA8 LINE L1 -10 6281 6100 310 178 14 0 chr1 281290318 281290391 -903273 + L1MDa LINE L1 2092 2165 -4375 621 250 51 22 chr1 281290404 281290767 -902897 + L1MDa LINE L1 2356 2771 -3892 240 86 0 0 chr1 281291010 281291045 -902619 + (CA)n Simple_repeat Simple_repeat 2 36 0 660 208 27 0 chr1 281291045 281291194 -902470 - L1MA7 LINE L1 -31 6260 6108 2010 128 3 3 chr1 281291384 281291681 -901983 - AluSx SINE Alu -15 297 1 1339 105 10 5 chr1 281291760 281291960 -901704 + L1PA10 LINE L1 5965 6165 -3 271 282 18 0 chr1 281291992 281292102 -901562 + (TA)n Simple_repeat Simple_repeat 2 113 0 1980 271 50 28 chr1 281294844 281296124 -897540 + L1MA8 LINE L1 2262 3480 -4085 2396 62 0 13 chr1 281296146 281296453 -897211 - AluY SINE Alu -6 305 3 11833 196 56 19 chr1 281296472 281297885 -895779 + L1MA8 LINE L1 3628 4987 -2723 6842 56 14 1 chr1 281297885 281299209 -894455 + L1PA7 LINE L1 4812 6154 0 11833 196 56 19 chr1 281299209 281301720 -891944 + L1MA8 LINE L1 4987 7710 0 3419 228 22 25 chr1 281301733 281302628 -891036 + L1MC/D LINE L1 4349 5245 -1019 688 209 0 15 chr1 281302628 281302762 -890902 + FLAM_C SINE Alu 2 133 0 3419 228 22 25 chr1 281302762 281302796 -890868 + L1MC/D LINE L1 5245 5278 -986 2269 115 3 0 chr1 281302796 281303108 -890556 + AluSp SINE Alu 1 313 0 3419 228 22 25 chr1 281303108 281303355 -890309 + L1MC/D LINE L1 5278 5520 -744 1730 144 20 7 chr1 281303355 281303653 -890011 + L1MC1 LINE L1 6013 6322 -11 921 204 0 0 chr1 281303658 281303825 -889839 + FAM SINE Alu 2 168 -7 23 0 0 0 chr1 281304580 281304603 -889061 + AT_rich Low_complexity Low_complexity 1 23 0 257 248 88 24 chr1 281304943 281305068 -888596 + HAL1 LINE L1 1391 1523 -984 585 286 43 130 chr1 281305221 281305337 -888327 - L2 LINE L2 0 3313 3189 4666 34 0 2 chr1 281305337 281305897 -887767 + L1PA5 LINE L1 5594 6152 -2 585 286 43 130 chr1 281305897 281306376 -887288 - L2 LINE L2 -124 3189 2772 495 305 29 35 chr1 281306430 281306745 -886919 - L1ME LINE L1 -585 5577 5265 1014 297 101 11 chr1 281306764 281307218 -886446 + L2 LINE L2 2283 2777 -537 25 31 0 0 chr1 281307584 281307616 -886048 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1 281307653 281307675 -885989 + AT_rich Low_complexity Low_complexity 1 22 0 2548 155 5 2 chr1 281307968 281308395 -885269 - MSTA LTR MaLR 0 428 1 2831 86 5 0 chr1 281308556 281308953 -884711 + L1PA13 LINE L1 5765 6163 0 1880 276 101 19 chr1 281309087 281310027 -883637 - L1MC4a LINE L1 -1538 6270 5254 363 323 36 5 chr1 281310245 281310440 -883224 - L1MC4a LINE L1 -1127 5019 4819 2782 211 35 8 chr1 281310775 281311433 -882231 - L1MD2 LINE L1 -3 6616 5941 247 174 0 29 chr1 281311436 281311505 -882159 + (TA)n Simple_repeat Simple_repeat 2 68 0 304 204 21 75 chr1 281311515 281311608 -882056 + L1MC4 LINE L1 6614 6701 -1341 237 282 47 0 chr1 281311637 281311722 -881942 + L1MC4 LINE L1 6614 6702 -1340 368 182 10 78 chr1 281311764 281311956 -881708 + (TA)n Simple_repeat Simple_repeat 2 180 0 1355 239 89 5 chr1 281311966 281312347 -881317 - L1MD2 LINE L1 -680 5939 5527 * 1797 248 129 47 chr1 281312314 281312902 -880762 - L1MD2 LINE L1 -1886 4520 3832 1474 134 5 0 chr1 281312902 281313143 -880521 + AluSg/x SINE Alu 66 307 0 1797 248 129 47 chr1 281313143 281313435 -880229 - L1MD2 LINE L1 -2574 3832 3566 1593 90 129 3 chr1 281313602 281313823 -879841 + MER1A DNA MER1_type 144 336 -2370 432 51 0 0 chr1 281313823 281313882 -879782 + (TA)n Simple_repeat Simple_repeat 1 59 0 1593 90 129 3 chr1 281313882 281314002 -879662 + MER1A DNA MER1_type 336 533 0 1000 290 105 24 chr1 281314014 281314479 -879185 - L1MD2 LINE L1 -5892 517 15 292 303 30 0 chr1 281314596 281314728 -878936 - L1MC4a LINE L1 -1809 4337 4202 23 0 0 0 chr1 281316125 281316148 -877516 + AT_rich Low_complexity Low_complexity 1 23 0 7439 30 3 1 chr1 281316271 281317908 -875756 + L1PA3 LINE L1 4517 6155 0 1565 241 20 55 chr1 281318344 281318838 -874826 + MLT1D LTR MaLR 1 477 -28 28 79 0 0 chr1 281318889 281318952 -874712 + AT_rich Low_complexity Low_complexity 1 63 0 1575 138 53 10 chr1 281319448 281319752 -873912 - L1MA4 LINE L1 -8 6292 5976 3915 230 98 26 chr1 281319774 281323076 -870588 + L1MA8 LINE L1 2488 6122 -169 192 40 0 0 chr1 281323209 281323234 -870430 + (TG)n Simple_repeat Simple_repeat 2 26 0 524 282 78 32 chr1 281323805 281324200 -869464 + L1MDa LINE L1 1615 2081 -4561 180 111 0 0 chr1 281324499 281324526 -869138 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 267 278 66 20 chr1 281324722 281324873 -868791 + L1MDa LINE L1 2677 2834 -3706 479 288 85 0 chr1 281325032 281325209 -868455 - LTR50 LTR ERVL -582 213 22 737 245 60 118 chr1 281326080 281326460 -867204 + MER57A LTR ERV1 46 403 0 324 0 0 0 chr1 281327063 281327099 -866565 + (CA)n Simple_repeat Simple_repeat 1 36 0 505 243 18 0 chr1 281327669 281327780 -865884 + MER81 DNA DNA 1 113 -1 234 412 0 8 chr1 281328340 281328471 -865193 + MIR SINE MIR 28 157 -105 2258 83 7 0 chr1 281328475 281328764 -864900 - AluSp SINE Alu -22 291 1 1720 150 55 0 chr1 281329317 281329610 -864054 - AluJb SINE Alu -3 309 1 21 71 0 0 chr1 281330104 281330146 -863518 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 281330169 281330191 -863473 + AT_rich Low_complexity Low_complexity 1 22 0 290 283 59 53 chr1 281330315 281330467 -863197 - MIR SINE MIR 0 262 110 298 365 66 12 chr1 281331745 281331986 -861678 + MIR SINE MIR 5 258 -4 667 181 15 30 chr1 281332413 281332546 -861118 + FLAM_C SINE Alu 3 133 0 188 238 16 0 chr1 281333158 281333221 -860443 + (TA)n Simple_repeat Simple_repeat 2 65 0 246 337 31 51 chr1 281335094 281335290 -858374 - MLT1J LTR MaLR -85 426 235 232 88 0 0 chr1 281335766 281335800 -857864 + L1M1 LINE L1 5745 5778 -527 268 232 33 39 chr1 281335838 281336019 -857645 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 * 320 242 28 22 chr1 281335914 281336092 -857572 + (TA)n Simple_repeat Simple_repeat 1 179 0 282 312 0 0 chr1 281336216 281336293 -857371 + (CATA)n Simple_repeat Simple_repeat 3 79 0 635 212 45 28 chr1 281336641 281336820 -856844 - L1MA8 LINE L1 -10 6281 6100 301 178 14 0 chr1 281336889 281336962 -856702 + L1MDa LINE L1 2092 2165 -4375 581 250 51 22 chr1 281336975 281337338 -856326 + L1MDa LINE L1 2356 2771 -3892 240 86 0 0 chr1 281337581 281337616 -856048 + (CA)n Simple_repeat Simple_repeat 2 36 0 601 201 29 0 chr1 281337616 281337755 -855909 - L1MA7 LINE L1 -31 6260 6118 2042 128 3 3 chr1 281337956 281338253 -855411 - AluSx SINE Alu -15 297 1 1350 105 10 5 chr1 281338332 281338532 -855132 + L1PA10 LINE L1 5965 6165 -3 255 291 18 0 chr1 281338564 281338674 -854990 + (TA)n Simple_repeat Simple_repeat 2 113 0 1911 269 81 34 chr1 281341419 281342697 -850967 + L1MA8 LINE L1 2262 3480 -4085 2400 63 0 13 chr1 281342719 281343022 -850642 - AluY SINE Alu -10 301 3 11651 195 56 19 chr1 281343041 281344453 -849211 + L1MA8 LINE L1 3628 4986 -2724 6834 57 14 1 chr1 281344453 281345777 -847887 + L1PA7 LINE L1 4812 6154 0 11651 195 56 19 chr1 281345777 281348288 -845376 + L1MA8 LINE L1 4986 7710 0 3340 228 22 25 chr1 281348301 281349196 -844468 + L1MC/D LINE L1 4349 5245 -1019 696 209 0 15 chr1 281349196 281349330 -844334 + FLAM_C SINE Alu 2 133 0 3340 228 22 25 chr1 281349330 281349364 -844300 + L1MC/D LINE L1 5245 5278 -986 2341 109 3 0 chr1 281349364 281349676 -843988 + AluSp SINE Alu 1 313 0 3340 228 22 25 chr1 281349676 281349923 -843741 + L1MC/D LINE L1 5278 5520 -744 1754 141 20 7 chr1 281349923 281350221 -843443 + L1MC1 LINE L1 6013 6322 -11 904 216 0 0 chr1 281350226 281350393 -843271 + FAM SINE Alu 2 168 -7 23 0 0 0 chr1 281351148 281351171 -842493 + AT_rich Low_complexity Low_complexity 1 23 0 6519 49 3 167 chr1 281351812 281353008 -840656 - SVA Other Other -385 1001 2 242 28 0 28 chr1 281353012 281353048 -840616 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 1943 155 68 32 chr1 281353766 281353805 -839859 - MLT2D LTR ERVL 0 414 378 198 0 0 0 chr1 281353805 281353827 -839837 + (TG)n Simple_repeat Simple_repeat 1 22 0 1943 155 68 32 chr1 281353827 281354187 -839477 - MLT2D LTR ERVL -36 378 1 237 179 90 15 chr1 281354292 281354359 -839305 - MER104 DNA Tc2 -87 93 22 201 246 18 0 chr1 281354374 281354431 -839233 + (CAT)n Simple_repeat Simple_repeat 3 60 0 416 91 0 0 chr1 281355258 281355348 -838316 - Alu SINE Alu 0 315 226 1693 163 3 7 chr1 281355350 281355645 -838019 - AluJo SINE Alu -15 297 4 28 91 0 0 chr1 281356741 281356818 -836846 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr1 281357777 281357799 -835865 + AT_rich Low_complexity Low_complexity 1 22 0 1883 118 209 9 chr1 281358499 281358848 -834816 + MSTA LTR MaLR 10 428 0 3235 227 43 5 chr1 281359230 281360067 -833597 + L1P LINE L1 4492 5360 -786 2111 128 0 0 chr1 281360073 281360362 -833302 + AluSc SINE Alu 1 289 -20 26670 121 14 78 chr1 281360385 281365510 -828154 + L1P LINE L1 12 4810 -1336 605 121 4 11 chr1 281365614 281365723 -827941 + L1MB2 LINE L1 6040 6150 -18 41 48 0 0 chr1 281365838 281365900 -827764 + AT_rich Low_complexity Low_complexity 1 62 0 697 230 18 24 chr1 281366052 281366217 -827447 - FAM SINE Alu -8 167 4 247 308 35 56 chr1 281366254 281366351 -827313 + L1ME1 LINE L1 3428 3526 -2620 948 202 0 34 chr1 281366351 281366559 -827105 + L1PB4 LINE L1 5956 6156 0 247 308 35 56 chr1 281366559 281366747 -826917 + L1ME1 LINE L1 3526 3707 -2439 4017 44 2 8 chr1 281367706 281368234 -825430 - L1PA5 LINE L1 -753 5393 4869 6031 45 17 0 chr1 281368234 281368977 -824687 + L1PA5 LINE L1 5392 6153 -1 379 272 76 43 chr1 281368999 281369263 -824401 + L1ME1 LINE L1 5188 5454 -712 23 54 0 0 chr1 281369959 281369996 -823668 + AT_rich Low_complexity Low_complexity 1 37 0 225 176 0 0 chr1 281370349 281370383 -823281 - Alu SINE Alu -266 34 1 1138 238 32 92 chr1 281370384 281370876 -822788 + L1ME1 LINE L1 5700 6162 -4 31 58 0 0 chr1 281370878 281370930 -822734 + AT_rich Low_complexity Low_complexity 1 52 0 23 54 0 0 chr1 281371058 281371095 -822569 + AT_rich Low_complexity Low_complexity 1 37 0 362 132 0 15 chr1 281372331 281372399 -821265 + (GA)n Simple_repeat Simple_repeat 1 67 0 1695 281 26 10 chr1 281372893 281373388 -820276 - MLT1D LTR MaLR -2 503 1 27 49 0 0 chr1 281373591 281373632 -820032 + AT_rich Low_complexity Low_complexity 1 41 0 180 217 0 0 chr1 281373735 281373781 -819883 + (TG)n Simple_repeat Simple_repeat 1 46 0 238 286 50 59 chr1 281374157 281374276 -819388 + L2 LINE L2 3196 3313 0 21 0 0 0 chr1 281374856 281374877 -818787 + AT_rich Low_complexity Low_complexity 1 21 0 275 57 0 0 chr1 281374880 281374915 -818749 + MADE1 DNA Mariner 46 80 0 275 321 36 14 chr1 281374958 281375098 -818566 - MIR SINE MIR -1 261 119 466 351 53 13 chr1 281375778 281376006 -817658 - MIR SINE MIR -17 245 9 414 332 142 9 chr1 281376256 281376467 -817197 + MIR SINE MIR 2 240 -22 1536 120 69 0 chr1 281376611 281376872 -816792 - AluSg SINE Alu 0 308 32 4418 122 15 1 chr1 281377818 281378677 -814987 - L1PB1 LINE L1 -248 5903 5038 261 254 28 0 chr1 281378752 281378823 -814841 - L1ME3A LINE L1 -72 6098 6026 189 352 70 0 chr1 281378876 281379004 -814660 - MIR SINE MIR -69 193 57 439 295 48 39 chr1 281379028 281379235 -814429 - MER3 DNA MER1_type 0 209 1 2082 117 3 0 chr1 281379529 281379820 -813844 + AluSx SINE Alu 13 304 -8 630 181 27 75 chr1 281379826 281380014 -813650 - L1MD1 LINE L1 -164 6078 5900 2443 281 46 27 chr1 281380707 281382023 -811641 + L1ME2 LINE L1 4797 6154 -10 31 26 0 0 chr1 281382029 281382067 -811597 + AT_rich Low_complexity Low_complexity 1 38 0 212 350 0 0 chr1 281382258 281382318 -811346 - L2 LINE L2 -16 3297 3238 1025 163 40 40 chr1 281383304 281383469 -810195 - L1 LINE L1 -1624 4522 4358 379 0 0 0 chr1 281383469 281383511 -810153 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 2226 97 0 0 chr1 281383494 281383791 -809873 - AluSg SINE Alu -1 323 3 1025 163 40 40 chr1 281383791 281383875 -809789 - L1 LINE L1 -2067 4079 4271 261 0 0 0 chr1 281384052 281384081 -809583 + (CA)n Simple_repeat Simple_repeat 2 30 0 742 115 0 0 chr1 281384306 281384410 -809254 - AluY SINE Alu -205 106 3 207 291 117 10 chr1 281384435 281384538 -809126 + MIR SINE MIR 123 236 -26 206 280 27 0 chr1 281384778 281384853 -808811 + (TA)n Simple_repeat Simple_repeat 1 77 0 256 224 0 24 chr1 281384868 281384953 -808711 + (TA)n Simple_repeat Simple_repeat 2 84 0 313 312 86 38 chr1 281385367 281385553 -808111 - MIR SINE MIR -36 226 32 256 220 0 0 chr1 281387196 281387246 -806418 + L2 LINE L2 3218 3267 -5 22 35 0 0 chr1 281387302 281387331 -806333 + AT_rich Low_complexity Low_complexity 1 29 0 288 77 0 0 chr1 281388010 281388049 -805615 + (CA)n Simple_repeat Simple_repeat 1 39 0 317 368 81 6 chr1 281389157 281389331 -804333 - MIR SINE MIR -6 256 70 789 166 22 0 chr1 281390371 281390510 -803154 + L1PA15 LINE L1 6017 6158 -7 21 0 0 0 chr1 281390523 281390544 -803120 + AT_rich Low_complexity Low_complexity 1 21 0 2835 169 44 14 chr1 281390797 281391705 -801959 - L1M2 LINE L1 -615 5676 4732 922 182 43 0 chr1 281391706 281391893 -801771 - L1MA5A LINE L1 -7 6290 6096 1002 238 35 8 chr1 281391907 281392168 -801496 + Charlie1 DNA MER1_type 1913 2180 -581 3383 22 0 2 chr1 281392173 281392578 -801086 - L1PA4 LINE L1 -875 5271 4868 7419 28 5 1 chr1 281392578 281393463 -800201 + L1PA4 LINE L1 5262 6152 -3 485 183 110 32 chr1 281393596 281393815 -799849 + Charlie1 DNA MER1_type 2387 2622 -139 2506 214 25 50 chr1 281393846 281394258 -799406 + L1 LINE L1 4415 4836 -1310 798 102 42 0 chr1 281394258 281394376 -799288 + L1PA15 LINE L1 6035 6157 -8 2506 214 25 50 chr1 281394376 281394958 -798706 + L1 LINE L1 4836 5330 -816 246 182 0 0 chr1 281394964 281395008 -798656 - L1M2 LINE L1 -1399 4747 4704 1222 171 37 0 chr1 281395062 281395307 -798357 - L1M2 LINE L1 -1448 4698 4445 3061 247 239 19 chr1 281395321 281397386 -796278 - L1M3c LINE L1 -4516 2521 41 5319 225 38 46 chr1 281397390 281398962 -794702 + MER31-int LTR ERV1 2648 4205 -731 2478 57 0 3 chr1 281398976 281399276 -794388 + AluY SINE Alu 3 301 -10 333 328 98 20 chr1 281399883 281400087 -793577 - MIR SINE MIR -20 242 23 339 297 121 16 chr1 281400818 281401000 -792664 - L1MC/D LINE L1 -2354 5454 5254 465 227 57 87 chr1 281401505 281401734 -791930 + LTR56 LTR ERV1 8 229 -216 271 178 0 0 chr1 281401872 281401917 -791747 + L1PB4 LINE L1 6093 6137 -19 582 301 48 23 chr1 281402601 281403196 -790468 + L1ME LINE L1 4930 5570 -592 290 163 0 0 chr1 281403216 281403265 -790399 - L1PA13 LINE L1 -5369 1418 1370 588 204 30 8 chr1 281403476 281403608 -790056 - MER3 DNA MER1_type 0 2367 2233 399 232 88 16 chr1 281403610 281403735 -789929 - MER3 DNA MER1_type -41 168 35 213 39 0 0 chr1 281404152 281404178 -789486 + (TG)n Simple_repeat Simple_repeat 2 27 0 213 39 0 0 chr1 281404342 281404368 -789296 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 0 0 0 chr1 281405388 281405412 -788252 + AT_rich Low_complexity Low_complexity 1 24 0 1580 140 96 22 chr1 281406630 281406901 -786763 + AluSx SINE Alu 5 295 -17 689 176 0 29 chr1 281409533 281409669 -783995 + AluJb SINE Alu 3 134 -178 288 77 0 0 chr1 281410439 281410478 -783186 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 736 288 118 32 chr1 281411922 281412184 -781480 - L1MC/D LINE L1 -1492 4654 4416 1431 213 15 59 chr1 281412184 281412592 -781072 - MLT1B LTR MaLR 0 390 1 736 288 118 32 chr1 281412592 281412920 -780744 - L1MC/D LINE L1 -1730 4416 4013 586 253 16 22 chr1 281412972 281413172 -780492 - MER92B LTR ERV1 -31 561 185 232 268 45 38 chr1 281413231 281413388 -780276 - L1MC/D LINE L1 -2128 4018 3861 804 289 74 14 chr1 281413394 281413758 -779906 + L1MCb LINE L1 122 507 -5538 1219 223 38 0 chr1 281413784 281414076 -779588 - L1MC3 LINE L1 -1889 5896 5594 979 248 59 49 chr1 281414477 281414986 -778678 + L1MCb LINE L1 874 1387 -5167 487 281 56 48 chr1 281415079 281415577 -778087 + L1MCb LINE L1 1595 2059 -4505 1750 184 7 3 chr1 281415594 281415888 -777776 + MLT2B2 LTR ERVL 1 295 -220 320 158 0 0 chr1 281415891 281415948 -777716 + MLT2B2 LTR ERVL 459 515 0 307 249 85 60 chr1 281416001 281416202 -777462 + L1MCb LINE L1 2329 2534 -4030 917 195 36 18 chr1 281416248 281416469 -777195 - LTR55 LTR ERV -323 225 1 375 281 133 49 chr1 281416499 281417072 -776592 + L1MC4a LINE L1 5681 6301 -1507 10129 30 0 0 chr1 281417954 281419175 -774489 - L1PA5 LINE L1 -1910 4236 3016 9770 23 0 1 chr1 281419175 281421092 -772572 + L1PA5 LINE L1 4237 6152 -2 499 345 58 28 chr1 281421169 281421572 -772092 - L2 LINE L2 -130 3183 2772 438 294 35 42 chr1 281421629 281421942 -771722 - L1ME LINE L1 -587 5575 5265 1047 293 101 11 chr1 281421961 281422415 -771249 + L2 LINE L2 2283 2777 -537 243 253 99 11 chr1 281422540 281422631 -771033 + L1ME3A LINE L1 5846 5944 -226 31 96 0 0 chr1 281422795 281422889 -770775 + AT_rich Low_complexity Low_complexity 1 94 0 2586 157 2 2 chr1 281423182 281423610 -770054 - MSTA LTR MaLR 0 428 1 1383 174 20 10 chr1 281424127 281424426 -769238 - L1MA7 LINE L1 -3 6288 5987 4496 130 55 25 chr1 281424717 281425493 -768171 + MER4D LTR ERV1 1 800 -103 326 155 10 4 chr1 281425490 281425596 -768068 + MER4D LTR ERV1 622 769 -103 * 345 123 21 0 chr1 281425592 281425694 -767970 + MER4D LTR ERV1 714 796 -107 373 91 18 0 chr1 281425694 281425749 -767915 + MER4D LTR ERV1 745 800 -103 302 106 21 0 chr1 281425749 281425796 -767868 + MER4D LTR ERV1 749 796 -107 354 109 18 0 chr1 281425796 281425851 -767813 + MER4D LTR ERV1 714 769 -103 345 127 18 0 chr1 281425848 281425903 -767761 + MER4A LTR ERV1 509 564 -100 * 335 100 20 0 chr1 281425898 281425948 -767716 + MER4D LTR ERV1 745 795 -108 * 365 107 18 0 chr1 281425948 281426004 -767660 + MER4D LTR ERV1 744 800 -103 * 1049 115 19 0 chr1 281426000 281426156 -767508 + MER4D LTR ERV1 745 903 0 362 252 76 34 chr1 281427450 281427569 -766095 + LTR33 LTR ERVL 153 276 -245 295 217 52 61 chr1 281427628 281427743 -765921 + LTR33 LTR ERVL 397 510 -11 30 27 0 0 chr1 281428630 281428667 -764997 + AT_rich Low_complexity Low_complexity 1 37 0 2531 40 10 0 chr1 281429361 281429662 -764002 - AluY SINE Alu -7 304 1 22 94 0 0 chr1 281429695 281429759 -763905 + AT_rich Low_complexity Low_complexity 1 64 0 2391 96 0 0 chr1 281430821 281431123 -762541 - AluSc SINE Alu -7 302 1 330 294 81 35 chr1 281431240 281431437 -762227 + L1ME3A LINE L1 5746 5951 -219 206 225 0 14 chr1 281431471 281431542 -762122 + (CATA)n Simple_repeat Simple_repeat 4 73 0 2432 81 3 0 chr1 281431858 281432167 -761497 + AluSq SINE Alu 1 310 -3 234 243 71 0 chr1 281433521 281433591 -760073 + MIR SINE MIR 132 206 -56 315 0 0 0 chr1 281437092 281437127 -756537 + (TG)n Simple_repeat Simple_repeat 2 36 0 286 233 60 83 chr1 281437495 281437628 -756036 - MIR SINE MIR 0 262 133 1138 186 5 19 chr1 281438214 281438424 -755240 + AluJo SINE Alu 1 207 -105 1546 229 64 99 chr1 281438462 281439208 -754456 + MER21B LTR ERV1 16 735 -128 669 293 166 12 chr1 281439376 281439858 -753806 + L2 LINE L2 2553 3102 -211 30209 102 9 16 chr1 281439879 281445047 -748617 + L1P3 LINE L1 780 5992 -477 248 281 48 81 chr1 281445056 281445266 -748398 + L2 LINE L2 3111 3313 0 14917 181 32 6 chr1 281445570 281447940 -745724 + L1MA3 LINE L1 13 2472 -5093 2031 117 88 9 chr1 281447940 281448283 -745381 - THE1C LTR MaLR -4 371 2 14917 181 32 6 chr1 281448283 281448794 -744870 + L1MA3 LINE L1 2472 2968 -4597 5813 151 24 6 chr1 281448796 281450678 -742986 + L1MA3 LINE L1 5806 7723 -1 279 214 0 0 chr1 281451401 281451471 -742193 + (CA)n Simple_repeat Simple_repeat 2 71 0 2686 180 20 4 chr1 281452653 281453164 -740500 - Tigger1 DNA MER2_type -1898 520 2 3093 164 21 32 chr1 281453164 281453818 -739846 + L1MA7 LINE L1 5642 6288 -3 22 56 0 0 chr1 281453859 281453895 -739769 + AT_rich Low_complexity Low_complexity 1 36 0 425 332 16 16 chr1 281456800 281456990 -736674 - L1ME1 LINE L1 -18 6148 5959 285 29 0 0 chr1 281457496 281457530 -736134 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 241 0 0 chr1 281458330 281458384 -735280 + MER94 DNA DNA 42 95 -39 848 199 25 2 chr1 281458533 281458779 -734885 + AluJb SINE Alu 1 297 -15 444 273 105 13 chr1 281458936 281459174 -734490 - L1M4 LINE L1 -761 5385 5126 1955 91 14 7 chr1 281459177 281459453 -734211 - AluSx SINE Alu -12 300 23 1820 237 172 40 chr1 281459530 281460425 -733239 + L1M3e LINE L1 8 1020 -6010 1716 131 0 34 chr1 281460445 281460743 -732921 + Tigger3(Golem) DNA MER2_type 1181 1468 -1561 1323 277 114 23 chr1 281460757 281461395 -732269 - L1MDa LINE L1 -5661 879 18 230 116 0 0 chr1 281461400 281461443 -732221 - L1MC3 LINE L1 -9 7776 7734 23 0 0 0 chr1 281462883 281462906 -730758 + AT_rich Low_complexity Low_complexity 1 23 0 392 149 4 35 chr1 281462915 281463038 -730626 - L1MA7 LINE L1 -13 6278 6164 13133 173 16 19 chr1 281463088 281465146 -728518 - L1MA1 LINE L1 -293 6009 3961 2838 68 3 10 chr1 281465146 281465530 -728134 - L1PA8 LINE L1 -6 6166 5786 13133 173 16 19 chr1 281465530 281467080 -726584 - L1MA1 LINE L1 -2341 3961 2409 2087 160 43 53 chr1 281467074 281467508 -726156 + L1MA10 LINE L1 5833 6263 -71 * 2482 60 3 19 chr1 281467508 281467823 -725841 - AluY SINE Alu -1 310 1 2087 160 43 53 chr1 281467823 281467895 -725769 + L1MA10 LINE L1 6263 6334 0 444 171 0 0 chr1 281468024 281468100 -725564 + U6 snRNA snRNA 1 76 -31 32 26 0 0 chr1 281470285 281470324 -723340 + AT_rich Low_complexity Low_complexity 1 39 0 2021 141 3 16 chr1 281470494 281470807 -722857 + AluSx SINE Alu 1 309 -3 5669 102 21 10 chr1 281470962 281471879 -721785 + L1PB3 LINE L1 5222 6147 -7 210 196 20 0 chr1 281471885 281471936 -721728 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 304 260 26 0 chr1 281472312 281472389 -721275 + L2 LINE L2 3194 3272 0 3874 52 21 0 chr1 281472436 281472921 -720743 - L1PA6 LINE L1 -6 6148 5654 277 130 0 0 chr1 281473018 281473072 -720592 - L1MA8 LINE L1 -1 6290 6237 396 0 0 0 chr1 281474032 281474076 -719588 + (TG)n Simple_repeat Simple_repeat 2 45 0 1879 99 3 7 chr1 281474081 281474363 -719301 - L1PA13 LINE L1 -19 6144 5864 1325 269 42 44 chr1 281474839 281475430 -718234 - MER76 LTR ERV -10 678 89 542 228 48 7 chr1 281475429 281475574 -718090 + MER76 LTR ERV 357 507 -181 * 195 283 75 42 chr1 281477235 281477355 -716309 + L2 LINE L2 1763 1886 -1428 256 291 100 36 chr1 281477416 281477526 -716138 + L2 LINE L2 2255 2371 -943 2145 96 10 7 chr1 281477842 281478134 -715530 + AluY SINE Alu 1 293 -18 27 73 0 0 chr1 281478147 281478202 -715462 + AT_rich Low_complexity Low_complexity 1 55 0 676 204 19 78 chr1 281478250 281478456 -715208 - L1PA16 LINE L1 -9 6157 5964 198 0 0 0 chr1 281478458 281478480 -715184 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 4318 177 18 42 chr1 281478480 281479941 -713723 - L1PA3 LINE L1 -7 6148 4725 13556 113 50 8 chr1 281479941 281482119 -711545 + L1PA8 LINE L1 3276 5520 -652 2321 105 0 0 chr1 281482119 281482424 -711240 + AluY SINE Alu 1 305 -6 13556 113 50 8 chr1 281482424 281483106 -710558 + L1PA8 LINE L1 5520 6172 0 1319 104 0 31 chr1 281484292 281484315 -709349 - AluSc SINE Alu 0 309 287 181 0 0 0 chr1 281484315 281484335 -709329 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1319 104 0 31 chr1 281484335 281484503 -709161 - AluSc SINE Alu -22 287 119 26 30 0 0 chr1 281485887 281485920 -707744 + AT_rich Low_complexity Low_complexity 1 33 0 183 208 21 42 chr1 281486068 281486116 -707548 + L3b LINE CR1 1250 1296 -287 5959 34 1 3 chr1 281487224 281487941 -705723 + L1PA4 LINE L1 5439 6154 -1 1568 162 11 15 chr1 281488181 281488446 -705218 + AluJo SINE Alu 27 290 -22 30 45 0 0 chr1 281488717 281488761 -704903 + AT_rich Low_complexity Low_complexity 1 44 0 4878 118 42 4 chr1 281488991 281490206 -703458 - L1PA16 LINE L1 -9 6157 4879 1225 195 81 108 chr1 281490206 281490652 -703012 + MER34B LTR ERV1 9 442 -123 483 206 43 14 chr1 281490679 281490820 -702844 + MER34C LTR ERV1 440 584 -1 7658 216 22 12 chr1 281491048 281492221 -701443 - L1PA3 LINE L1 -2155 3991 2831 3811 196 33 54 chr1 281492221 281493210 -700454 - LTR5 LTR ERVK 0 969 1 7658 216 22 12 chr1 281493210 281493648 -700016 - L1PA3 LINE L1 -3315 2831 2399 1503 119 9 14 chr1 281493648 281493867 -699797 - AluSg/x SINE Alu 0 310 93 7658 216 22 12 chr1 281493867 281494370 -699294 - L1PA3 LINE L1 -3747 2399 1848 1043 126 16 16 chr1 281494372 281494554 -699110 - MLT2D LTR ERVL -225 189 8 11844 177 78 38 chr1 281494634 281497287 -696377 - ERVL-D LTR ERVL -186 5578 2821 912 164 9 121 chr1 281497290 281497522 -696142 + MLT1C LTR MaLR 262 467 0 935 259 75 11 chr1 281497555 281497995 -695669 + L1ME1 LINE L1 5695 6162 -4 21 0 0 0 chr1 281498311 281498332 -695332 + AT_rich Low_complexity Low_complexity 1 21 0 1561 145 18 22 chr1 281498612 281498663 -695001 + Tigger4(Zombi) DNA MER2_type 1 51 -2680 1735 181 0 0 chr1 281498663 281498944 -694720 - AluJb SINE Alu -17 295 15 1561 145 18 22 chr1 281498944 281499249 -694415 + Tigger4(Zombi) DNA MER2_type 51 2728 -3 2034 194 11 57 chr1 281499892 281500557 -693107 - MER4D LTR ERV1 -10 893 1 2461 109 8 0 chr1 281501196 281501590 -692074 + L1P LINE L1 4317 4713 -1433 * 28662 118 9 57 chr1 281501584 281508068 -685596 + L1PA8 LINE L1 19 6178 0 21 82 0 0 chr1 281508422 281508471 -685193 + AT_rich Low_complexity Low_complexity 1 49 0 2015 144 3 3 chr1 281508679 281508984 -684680 + AluSx SINE Alu 1 305 -7 2349 85 0 3 chr1 281509849 281510144 -683520 - AluSc SINE Alu -15 294 1 1675 160 12 3 chr1 281510144 281510469 -683195 - L1P LINE L1 -943 5203 4876 1008 172 23 27 chr1 281510469 281510689 -682975 + L1MA9 LINE L1 6088 6307 -5 716 172 8 8 chr1 281510818 281510946 -682718 - FLAM_A SINE Alu -5 137 10 2202 110 0 3 chr1 281510990 281511282 -682382 + AluSg SINE Alu 1 291 -19 2059 118 3 40 chr1 281512074 281512395 -681269 + AluSc SINE Alu 1 309 0 650 187 36 0 chr1 281512698 281512837 -680827 + LTR39 LTR ERV1 5 148 -635 * 2608 166 9 26 chr1 281512836 281513371 -680293 + LTR39 LTR ERV1 258 783 0 1578 148 0 7 chr1 281513666 281513956 -679708 + L1MA4 LINE L1 6000 6287 -13 1864 179 0 3 chr1 281513968 281514280 -679384 + AluSx SINE Alu 1 311 -1 946 173 34 42 chr1 281514389 281514626 -679038 + L1MA9 LINE L1 6078 6312 0 2064 186 5 8 chr1 281515214 281515601 -678063 + MLT1B LTR MaLR 5 390 0 204 296 25 12 chr1 281516176 281516257 -677407 - MIR SINE MIR -104 158 77 21 0 0 0 chr1 281516322 281516343 -677321 + AT_rich Low_complexity Low_complexity 1 21 0 404 294 132 23 chr1 281516357 281516622 -677042 + L1M4 LINE L1 2851 3144 -3002 598 176 293 16 chr1 281516629 281516817 -676847 + L1ME1 LINE L1 5921 6160 -6 510 347 46 21 chr1 281518168 281518453 -675211 - L2 LINE L2 -355 2959 2668 216 0 0 0 chr1 281518706 281518730 -674934 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 386 301 93 67 chr1 281520407 281520825 -672839 + L1M4 LINE L1 2736 3164 -2982 21 36 0 0 chr1 281521163 281521191 -672473 + AT_rich Low_complexity Low_complexity 1 28 0 437 278 41 25 chr1 281521207 281521452 -672212 + L1M4 LINE L1 3713 3961 -2185 1000 184 0 0 chr1 281521457 281521615 -672049 + FAM SINE Alu 1 158 -17 334 305 72 79 chr1 281521782 281522168 -671496 + L1M4 LINE L1 4133 4515 -1631 2242 99 0 0 chr1 281522168 281522452 -671212 + AluSg SINE Alu 1 284 -26 334 305 72 79 chr1 281522452 281522645 -671019 + L1M4 LINE L1 4515 4708 -1438 2437 130 60 16 chr1 281522996 281523433 -670231 + MER39B LTR ERV1 1 456 -197 727 171 20 75 chr1 281523837 281524036 -669628 - MER53 DNA DNA 0 189 2 186 103 0 0 chr1 281524480 281524509 -669155 + (CA)n Simple_repeat Simple_repeat 1 29 0 205 359 0 0 chr1 281525332 281525396 -668268 - MIR3 SINE MIR -46 162 99 339 277 212 0 chr1 281525574 281525711 -667953 - MER5A DNA MER1_type -3 186 21 521 221 19 10 chr1 281525748 281525852 -667812 + MER5A DNA MER1_type 20 124 -65 22 0 0 0 chr1 281526262 281526284 -667380 + AT_rich Low_complexity Low_complexity 1 22 0 1657 166 9 44 chr1 281526320 281526639 -667025 - AluJo SINE Alu -4 308 1 2409 68 3 10 chr1 281526786 281527097 -666567 + AluY SINE Alu 1 309 -2 1009 161 11 23 chr1 281527110 281527284 -666380 + FAM SINE Alu 1 172 -3 1124 152 15 61 chr1 281527321 281527585 -666079 - L1MA10 LINE L1 -11 6323 6072 1045 139 10 56 chr1 281527591 281527889 -665775 + L1M2 LINE L1 5191 5478 -743 1492 151 28 71 chr1 281528564 281528888 -664776 - AluJb SINE Alu 0 312 3 983 141 0 27 chr1 281529498 281529647 -664017 + FRAM SINE Alu 10 154 -22 1387 95 67 36 chr1 281529894 281530147 -663517 - Tigger7 DNA MER2_type 0 2491 2231 942 218 0 0 chr1 281531143 281531317 -662347 - FAM SINE Alu -1 174 1 2298 125 0 0 chr1 281531408 281531719 -661945 - AluSx SINE Alu -1 311 1 660 276 88 61 chr1 281532822 281533116 -660548 - L2 LINE L2 -20 3293 2983 1528 126 158 4 chr1 281533116 281533362 -660302 + AluSg1 SINE Alu 1 284 -25 660 276 88 61 chr1 281533362 281533625 -660039 - L2 LINE L2 -330 2983 2729 308 220 10 70 chr1 281533677 281533777 -659887 - L2 LINE L2 -757 2557 2464 24 0 0 0 chr1 281533911 281533935 -659729 + AT_rich Low_complexity Low_complexity 1 24 0 1964 227 15 17 chr1 281533939 281534411 -659253 + LTR31 LTR ERV1 115 585 -34 750 260 25 50 chr1 281534431 281534577 -659087 - L2 LINE L2 -855 2459 2322 1189 198 38 109 chr1 281534577 281534997 -658667 - MLT1B LTR MaLR 0 390 1 750 260 25 50 chr1 281534997 281535127 -658537 - L2 LINE L2 -992 2322 2190 3703 186 36 42 chr1 281535155 281536485 -657179 + L1MB5 LINE L1 4847 6161 -13 21 57 0 0 chr1 281536485 281536520 -657144 + AT_rich Low_complexity Low_complexity 1 35 0 183 398 36 0 chr1 281537661 281537744 -655920 + MIR SINE MIR 32 117 -91 1743 178 0 10 chr1 281538114 281538417 -655247 - AluJo SINE Alu -12 300 1 856 296 63 28 chr1 281539125 281539520 -654144 - L2 LINE L2 -10 3303 2895 534 282 72 23 chr1 281539494 281539564 -654100 - L2 LINE L2 -561 2753 2688 * 3543 147 44 14 chr1 281539564 281540197 -653467 - MER39B LTR ERV1 -1 652 1 534 282 72 23 chr1 281540197 281540388 -653276 - L2 LINE L2 -626 2688 2479 601 270 0 8 chr1 281540685 281540811 -652853 + FLAM_A SINE Alu 1 125 -8 248 263 0 0 chr1 281542172 281542229 -651435 + MER2 DNA MER2_type 1 57 -288 1097 156 76 22 chr1 281542243 281542708 -650956 - MER109 Unknown Unknown -11 2421 1897 * 2215 127 83 12 chr1 281542701 281543133 -650531 - MER109 Unknown Unknown -1040 1392 930 1775 172 25 64 chr1 281543334 281543816 -649848 - MLT2D LTR ERVL 0 464 1 1014 327 58 13 chr1 281544044 281544942 -648722 - ERVL LTR ERVL -1117 4647 3652 557 143 41 0 chr1 281544954 281545052 -648612 - L1MA6 LINE L1 -374 5926 5825 1103 104 6 0 chr1 281545052 281545203 -648461 + L1MA6 LINE L1 6135 6299 -1 2361 127 18 5 chr1 281545443 281545836 -647828 + L1MA5A LINE L1 5894 6291 -6 22 35 0 0 chr1 281547151 281547180 -646484 + AT_rich Low_complexity Low_complexity 1 29 0 4143 196 48 11 chr1 281547481 281548308 -645356 + MER21B LTR ERV1 5 862 -1 344 288 127 28 chr1 281548336 281548548 -645116 - L1MC/D LINE L1 -2222 5586 5354 383 314 189 27 chr1 281548797 281549259 -644405 - L2 LINE L2 -5 3308 2778 288 0 0 0 chr1 281549417 281549449 -644215 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr1 281549596 281549624 -644040 + AT_rich Low_complexity Low_complexity 1 28 0 301 350 67 11 chr1 281549957 281550137 -643527 + MIR SINE MIR 73 262 0 9898 40 10 133 chr1 281550513 281552078 -641586 - SVA Other Other 0 1386 14 2658 169 44 14 chr1 281552340 281553248 -640416 - L1M2 LINE L1 -615 5676 4732 897 182 43 0 chr1 281553249 281553436 -640228 - L1MA5A LINE L1 -7 6290 6096 929 238 35 8 chr1 281553450 281553711 -639953 + Charlie1 DNA MER1_type 1913 2180 -581 3239 22 0 2 chr1 281553716 281554121 -639543 - L1PA2 LINE L1 -875 5271 4868 7679 15 0 1 chr1 281554121 281555058 -638606 + L1PA2 LINE L1 5262 6200 0 2339 243 22 25 chr1 281558925 281558945 -634719 - L1M2 LINE L1 -4779 2430 2411 435 172 0 0 chr1 281558945 281559038 -634626 - L1MA4A LINE L1 -7 6296 6204 2339 243 22 25 chr1 281559038 281559913 -633751 - L1M2 LINE L1 -4798 2411 1275 675 238 27 82 chr1 281559934 281560193 -633471 - L1M2 LINE L1 -6597 612 1 383 243 114 37 chr1 281560275 281560680 -632984 + L1MC5 LINE L1 7117 7495 -547 334 275 143 63 chr1 281561049 281561398 -632266 + L1M4 LINE L1 4640 5016 -1130 1446 189 82 2 chr1 281561404 281561920 -631744 - L1M2 LINE L1 -744 5402 4920 459 68 0 0 chr1 281561920 281561979 -631685 - MER39 LTR ERV1 -648 59 1 622 251 152 42 chr1 281562158 281562685 -630979 + MER34C LTR ERV1 1 585 0 2070 241 63 2 chr1 281562826 281563447 -630217 - LTR65 LTR ERV1 -6 663 5 23 0 0 0 chr1 281564106 281564129 -629535 + AT_rich Low_complexity Low_complexity 1 23 0 2105 125 0 0 chr1 281564280 281564569 -629095 - AluSx SINE Alu -20 292 4 21 0 0 0 chr1 281565122 281565143 -628521 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr1 281565290 281565313 -628351 + AT_rich Low_complexity Low_complexity 1 23 0 270 368 47 0 chr1 281565418 281565524 -628140 + MIR SINE MIR 88 198 -64 1041 211 64 76 chr1 281565869 281566408 -627256 - MER34B LTR ERV1 0 565 1 236 323 0 0 chr1 281566562 281566624 -627040 + MER5A DNA MER1_type 128 189 0 202 367 48 7 chr1 281567441 281567588 -626076 + MIR SINE MIR 14 166 -96 2454 69 3 3 chr1 281569722 281570027 -623637 + AluSp SINE Alu 1 305 -8 1950 59 30 7 chr1 281570215 281570486 -623178 + MLT2A1 LTR ERVL 1 277 -167 5563 78 17 0 chr1 281570487 281571243 -622421 + HERVL-A1 LTR ERVL 765 1533 -4121 28588 72 11 3 chr1 281571244 281575080 -618584 + HERVL-A1 LTR ERVL 1788 5654 0 2868 95 34 27 chr1 281575080 281575521 -618143 + MLT2A1 LTR ERVL 1 444 0 3645 96 11 4 chr1 281576310 281576854 -616810 + L1PA13 LINE L1 5616 6163 0 1552 276 101 19 chr1 281576988 281577928 -615736 - L1MC4a LINE L1 -1538 6270 5254 296 323 36 5 chr1 281578146 281578341 -615323 - L1MC4a LINE L1 -1127 5019 4819 2542 211 35 8 chr1 281578676 281579334 -614330 - L1MD2 LINE L1 -3 6356 5681 247 174 0 29 chr1 281579337 281579406 -614258 + (TA)n Simple_repeat Simple_repeat 1 67 0 303 204 21 75 chr1 281579416 281579509 -614155 + L1MC4 LINE L1 6614 6701 -1341 382 220 0 17 chr1 281579512 281579630 -614034 + (TA)n Simple_repeat Simple_repeat 2 117 0 434 159 12 65 chr1 281579712 281579882 -613782 + (TA)n Simple_repeat Simple_repeat 1 161 0 1226 227 93 6 chr1 281579883 281580248 -613416 - L1MD2 LINE L1 -696 5663 5267 702 228 11 21 chr1 281580215 281580404 -613260 - L1MD2 LINE L1 -1886 4260 4074 * 195 283 75 42 chr1 281582085 281582205 -611459 + L2 LINE L2 1763 1886 -1428 256 291 100 36 chr1 281582266 281582376 -611288 + L2 LINE L2 2255 2371 -943 25 0 0 0 chr1 281582789 281582814 -610850 + AT_rich Low_complexity Low_complexity 1 25 0 2270 102 0 7 chr1 281583231 281583534 -610130 - AluSc SINE Alu -8 301 1 1711 160 0 11 chr1 281584978 281585247 -608417 + AluJb SINE Alu 1 266 -46 1663 184 22 49 chr1 281585249 281585657 -608007 + L1MA7 LINE L1 4782 5178 -968 * 2850 136 81 2 chr1 281585648 281586142 -607522 + L1MA7 LINE L1 5431 5963 -328 3263 265 57 23 chr1 281586151 281587450 -606214 - L1M3de LINE L1 -5289 1364 3 753 291 59 87 chr1 281587492 281588134 -605530 - L1MEc LINE L1 -4180 2216 1685 2264 105 3 6 chr1 281588134 281588447 -605217 + AluSx SINE Alu 1 312 0 753 291 59 87 chr1 281588447 281589012 -604652 - L1MEc LINE L1 -4711 1685 1106 25 0 0 0 chr1 281589573 281589598 -604066 + AT_rich Low_complexity Low_complexity 1 25 0 1722 143 3 36 chr1 281591857 281592158 -601506 + AluJo SINE Alu 6 296 -16 24 32 0 0 chr1 281592158 281592189 -601475 + AT_rich Low_complexity Low_complexity 1 31 0 2210 94 19 13 chr1 281592490 281592797 -600867 + AluSx SINE Alu 1 309 -3 1630 193 7 3 chr1 281593059 281593359 -600305 - AluJo SINE Alu -11 301 1 2478 80 0 3 chr1 281593660 281593974 -599690 + AluSp SINE Alu 1 313 0 448 352 53 27 chr1 281594247 281594548 -599116 + L2 LINE L2 1985 2293 -1021 303 368 118 18 chr1 281595114 281595386 -598278 + L2 LINE L2 2586 2884 -430 2482 67 0 0 chr1 281595521 281595821 -597843 - AluY SINE Alu -11 300 1 2286 92 16 0 chr1 281595950 281596256 -597408 - AluSp SINE Alu -2 311 1 2135 107 0 30 chr1 281596432 281596732 -596932 + AluSg SINE Alu 3 293 -17 377 85 0 17 chr1 281596804 281596863 -596801 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 834 143 74 29 chr1 281598691 281598866 -594798 + L1MA9 LINE L1 6130 6312 0 2354 88 0 0 chr1 281598915 281599211 -594453 + AluSg SINE Alu 1 296 -14 21361 28 3 0 chr1 281599465 281602608 -591056 - L1PA2 LINE L1 -151 6004 2858 206 248 8 23 chr1 281602856 281602985 -590679 + A-rich Low_complexity Low_complexity 5 131 0 202 356 107 7 chr1 281603196 281603345 -590319 + L2 LINE L2 1113 1276 -2038 4853 169 26 15 chr1 281603353 281604239 -589425 + MER4D LTR ERV1 1 896 -7 607 303 66 36 chr1 281604249 281604553 -589111 + L2 LINE L2 1285 1597 -1717 574 259 105 92 chr1 281604561 281605114 -588550 + MER34B LTR ERV1 6 565 0 933 303 173 38 chr1 281605120 281606092 -587572 + L2 LINE L2 1605 2707 -607 762 110 0 0 chr1 281606934 281607034 -586630 + AluS SINE Alu 1 100 -213 2411 74 0 0 chr1 281607431 281607740 -585924 - AluSx SINE Alu -3 309 1 690 197 51 0 chr1 281607767 281607904 -585760 - L1PB4 LINE L1 -15 6141 5998 23 33 0 0 chr1 281608127 281608157 -585507 + AT_rich Low_complexity Low_complexity 1 30 0 1422 141 0 0 chr1 281609309 281609515 -584149 - AluJo SINE Alu -106 206 1 370 262 16 56 chr1 281609583 281609709 -583955 + L2 LINE L2 3193 3313 0 2170 146 10 55 chr1 281610751 281611169 -582495 - LOR1b LTR ERV1 0 461 63 369 0 0 0 chr1 281611171 281611212 -582452 + (TC)n Simple_repeat Simple_repeat 2 42 0 315 0 0 0 chr1 281611211 281611246 -582418 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 1485 83 16 0 chr1 281611410 281611603 -582061 - AluSg/x SINE Alu 0 310 115 1657 178 33 0 chr1 281612557 281612833 -580831 - AluSx SINE Alu -27 285 1 2331 87 0 0 chr1 281613237 281613535 -580129 + AluSg SINE Alu 3 300 -10 224 147 221 44 chr1 281614055 281614123 -579541 + L2 LINE L2 3234 3313 0 24 53 0 0 chr1 281614202 281614240 -579424 + AT_rich Low_complexity Low_complexity 1 38 0 1613 84 19 9 chr1 281614325 281614538 -579126 + AluSg SINE Alu 1 215 -95 336 294 0 37 chr1 281615629 281615738 -577926 + MER34 LTR ERV1 2 106 -436 1188 226 73 21 chr1 281615777 281616146 -577518 + LTR48B LTR ERV1 201 644 0 3481 219 36 40 chr1 281616341 281616678 -576986 + MER21B LTR ERV1 1 338 -525 2267 110 0 0 chr1 281616678 281616977 -576687 + AluSx SINE Alu 1 299 -13 3481 219 36 40 chr1 281616977 281617460 -576204 + MER21B LTR ERV1 338 818 -45 326 326 39 28 chr1 281617503 281617681 -575983 + MLT1I LTR MaLR 203 382 -27 2075 71 61 48 chr1 281618170 281618464 -575200 - AluSq SINE Alu -13 300 3 1163 168 0 15 chr1 281619057 281619253 -574411 + AluJo SINE Alu 86 278 -34 360 161 0 0 chr1 281619308 281619370 -574294 + AluS SINE Alu 2 63 -237 1997 127 0 38 chr1 281619395 281619710 -573954 + AluSx SINE Alu 1 303 -9 34 24 0 0 chr1 281619799 281619840 -573824 + AT_rich Low_complexity Low_complexity 1 41 0 820 178 0 0 chr1 281620600 281620729 -572935 - FLAM_A SINE Alu -4 129 1 308 294 107 48 chr1 281620992 281621179 -572485 + L1M2 LINE L1 447 644 -6205 1275 166 24 43 chr1 281621470 281621723 -571941 + AluJo SINE Alu 41 288 -24 339 133 0 53 chr1 281622233 281622308 -571356 - L1PB4 LINE L1 -3 6153 6083 2353 93 0 7 chr1 281622318 281622620 -571044 - AluSg SINE Alu -10 300 1 192 212 94 106 chr1 281623187 281623272 -570392 - MER5A DNA MER1_type -28 161 78 2444 95 0 13 chr1 281623719 281624036 -569628 - AluSp SINE Alu 0 313 1 917 172 31 84 chr1 281624359 281624586 -569078 - MER20 DNA MER1_type -4 215 1 268 313 0 0 chr1 281624586 281624666 -568998 + (TG)n Simple_repeat Simple_repeat 1 80 0 245 218 64 77 chr1 281624831 281624909 -568755 - L2 LINE L2 -1 3312 3236 1618 184 22 0 chr1 281625424 281625696 -567968 - AluJo SINE Alu -34 278 1 241 245 10 10 chr1 281626030 281626132 -567532 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr1 281626381 281626403 -567261 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1 281626455 281626483 -567181 + AT_rich Low_complexity Low_complexity 1 28 0 1616 199 82 15 chr1 281628026 281628273 -565391 - L1MB3 LINE L1 -36 6147 5863 345 24 0 0 chr1 281628273 281628315 -565349 + (TG)n Simple_repeat Simple_repeat 1 42 0 1616 199 82 15 chr1 281628315 281628459 -565205 - L1MB3 LINE L1 -320 5863 5730 21 36 0 0 chr1 281630619 281630647 -563017 + AT_rich Low_complexity Low_complexity 1 28 0 776 303 51 36 chr1 281631501 281631913 -561751 - LTR16A LTR ERVL -15 435 18 1488 223 32 69 chr1 281632190 281632656 -561008 + LTR38 LTR ERV1 97 545 -11 439 263 65 57 chr1 281632727 281632989 -560675 + L1MDa LINE L1 1269 1532 -5008 240 119 0 0 chr1 281633289 281633331 -560333 - L1P4 LINE L1 -342 5823 5782 355 24 0 0 chr1 281633333 281633375 -560289 - MADE1 DNA Mariner -2 78 37 4123 185 13 20 chr1 281633375 281634574 -559090 - L1P4 LINE L1 -523 5642 4453 2339 77 7 13 chr1 281635056 281635366 -558298 + AluY SINE Alu 1 308 -3 2243 170 109 22 chr1 281635383 281636720 -556944 - SATR1 Satellite Satellite -18 1452 1 258 279 44 0 chr1 281637113 281637181 -556483 + SATR1 Satellite Satellite 51 121 -349 1201 184 54 76 chr1 281637208 281637723 -555941 + SATR1 Satellite Satellite 1 503 -20 7515 30 0 0 chr1 281637723 281638657 -555007 + L1P LINE L1 3907 4840 -1306 1006 188 9 36 chr1 281638828 281639051 -554613 - LTR51 LTR ERV1 -454 217 1 2336 162 108 25 chr1 281639051 281639599 -554065 + LTR49 LTR ERV1 3 595 0 328 316 124 14 chr1 281639819 281640028 -553636 + MIR SINE MIR 1 232 -30 2169 105 10 19 chr1 281640104 281640417 -553247 + AluSp SINE Alu 1 310 -3 1017 75 22 34 chr1 281640424 281640746 -552918 + (GAAA)n Simple_repeat Simple_repeat 4 319 0 730 291 110 53 chr1 281640881 281641118 -552546 + MER45R DNA AcHobo 1 223 -1358 264 100 0 0 chr1 281641118 281641158 -552506 + (CA)n Simple_repeat Simple_repeat 1 40 0 730 291 110 53 chr1 281641158 281641582 -552082 + MER45R DNA AcHobo 223 700 -881 1729 170 45 3 chr1 281641656 281642038 -551626 + L1 LINE L1 4461 4858 -1288 1608 194 14 52 chr1 281642058 281642480 -551184 - L1MA4 LINE L1 -10 6290 5885 703 218 11 11 chr1 281642480 281642654 -551010 + L1 LINE L1 4844 5017 -1129 1295 133 47 16 chr1 281644313 281644568 -549096 - Tigger7 DNA MER2_type 0 2491 2229 1642 169 11 7 chr1 281644887 281645166 -548498 - AluJo SINE Alu -12 300 21 520 336 58 33 chr1 281645846 281646245 -547419 + HAL1 LINE L1 932 1340 -1167 1343 239 91 21 chr1 281646663 281647182 -546482 + L1MB3 LINE L1 4016 4570 -1576 5679 173 14 3 chr1 281647184 281648313 -545351 + L1P LINE L1 2213 3353 -2793 3438 109 6 0 chr1 281648313 281648805 -544859 + L1PA10 LINE L1 5657 6152 -16 29 0 0 0 chr1 281648811 281648840 -544824 + AT_rich Low_complexity Low_complexity 1 29 0 1346 249 18 20 chr1 281648859 281649316 -544348 + L1MB3 LINE L1 4579 5034 -1112 349 206 14 0 chr1 281649365 281649438 -544226 - Tigger5 DNA MER2_type 0 2323 2250 301 237 0 0 chr1 281649498 281649557 -544107 - Tigger5 DNA MER2_type 0 2323 2265 1867 202 76 54 chr1 281649589 281649683 -543981 + L1MB3 LINE L1 5578 5668 -515 1290 138 26 0 chr1 281649683 281649914 -543750 - L1PA16 LINE L1 -7 6159 5923 1867 202 76 54 chr1 281649914 281650409 -543255 + L1MB3 LINE L1 5668 6180 -3 21 0 0 0 chr1 281650612 281650633 -543031 + AT_rich Low_complexity Low_complexity 1 21 0 426 287 61 11 chr1 281650719 281650900 -542764 - LTR26 LTR ERV1 -325 278 89 233 175 0 0 chr1 281650978 281651018 -542646 + Alu SINE Alu 59 98 -204 231 88 0 0 chr1 281651460 281651494 -542170 + (TC)n Simple_repeat Simple_repeat 1 34 0 2767 157 32 3 chr1 281651823 281652362 -541302 + L1P4 LINE L1 5104 5666 -500 327 104 0 0 chr1 281652362 281652410 -541254 + (CA)n Simple_repeat Simple_repeat 1 48 0 2767 157 32 3 chr1 281652410 281652523 -541141 + L1P4 LINE L1 5666 5774 -392 203 136 45 0 chr1 281652959 281653003 -540661 + (TATG)n Simple_repeat Simple_repeat 2 47 0 213 132 0 0 chr1 281654434 281654472 -539192 + (TG)n Simple_repeat Simple_repeat 1 38 0 304 273 163 50 chr1 281656213 281656495 -537169 - L1M2 LINE L1 -6148 701 388 2429 61 0 3 chr1 281657631 281657942 -535722 - AluY SINE Alu -1 310 1 219 69 0 0 chr1 281657981 281658010 -535654 + (A)n Simple_repeat Simple_repeat 1 29 0 213 226 0 0 chr1 281658199 281658252 -535412 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 603 269 22 96 chr1 281659962 281660285 -533379 + L2 LINE L2 3014 3312 -1 22 0 0 0 chr1 281660769 281660791 -532873 + AT_rich Low_complexity Low_complexity 1 22 0 2007 139 10 0 chr1 281661140 281661442 -532222 - AluSx SINE Alu -7 305 1 314 215 42 132 chr1 281663805 281663890 -529774 + MIR SINE MIR 132 200 -62 288 0 0 0 chr1 281663890 281663922 -529742 + (CA)n Simple_repeat Simple_repeat 2 33 0 314 215 42 132 chr1 281663922 281663980 -529684 + MIR SINE MIR 200 262 0 1520 50 0 0 chr1 281664528 281664709 -528955 - AluY SINE Alu -130 181 1 4883 178 42 6 chr1 281664918 281666002 -527662 + L1MA5 LINE L1 5051 6179 -121 198 0 0 0 chr1 281666002 281666024 -527640 + (CA)n Simple_repeat Simple_repeat 2 23 0 4883 178 42 6 chr1 281666024 281666143 -527521 + L1MA5 LINE L1 6179 6292 -8 24 53 0 0 chr1 281667348 281667386 -526278 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr1 281667903 281667933 -525731 + AT_rich Low_complexity Low_complexity 1 30 0 417 309 94 11 chr1 281668542 281668733 -524931 - L2 LINE L2 -2783 531 325 1052 276 97 12 chr1 281670500 281671249 -522415 + L1ME2 LINE L1 5329 6164 0 2526 55 0 3 chr1 281672540 281672851 -520813 - AluY SINE Alu -1 310 1 181 265 118 0 chr1 281672959 281673027 -520637 + L2 LINE L2 2254 2329 -985 2156 103 3 26 chr1 281673779 281674091 -519573 - AluSq SINE Alu -8 305 1 2297 91 0 10 chr1 281674749 281675045 -518619 + AluSx SINE Alu 1 293 -19 1823 163 124 0 chr1 281675097 281675477 -518187 - MSTA LTR MaLR 0 428 2 1654 194 3 7 chr1 281675593 281675897 -517767 - AluJo SINE Alu -5 307 5 1329 287 59 77 chr1 281676539 281677621 -516043 - L2 LINE L2 0 3313 2258 398 324 113 14 chr1 281677623 281677836 -515828 - L2 LINE L2 -2977 337 104 2268 78 0 11 chr1 281678444 281678773 -514891 - AluY SINE Alu 0 328 3 2027 101 24 37 chr1 281679066 281679363 -514301 - AluSg SINE Alu -17 293 1 186 118 0 0 chr1 281679663 281679697 -513967 + (GA)n Simple_repeat Simple_repeat 2 35 0 201 39 0 0 chr1 281681094 281681120 -512544 + (GA)n Simple_repeat Simple_repeat 1 26 0 883 197 7 0 chr1 281681120 281681272 -512392 - FAM SINE Alu -32 153 1 22 70 0 0 chr1 281681344 281681387 -512277 + AT_rich Low_complexity Low_complexity 1 43 0 299 157 0 0 chr1 281681411 281681462 -512202 + MLT1E2 LTR MaLR 1 51 -603 1317 271 40 51 chr1 281681500 281681994 -511670 + MLT1E2 LTR MaLR 137 625 -1 2158 173 36 19 chr1 281682141 281682558 -511106 + MSTB LTR MaLR 1 424 -2 252 143 0 0 chr1 281682601 281682643 -511021 + (CTA)n Simple_repeat Simple_repeat 1 42 0 1846 135 21 10 chr1 281682678 281682967 -510697 - AluJb SINE Alu -20 292 1 233 321 82 1 chr1 281683035 281683159 -510505 - MIR SINE MIR -36 172 41 29306 42 34 2 chr1 281683269 281687132 -506532 - L1P LINE L1 -2150 3996 10 375 182 91 0 chr1 281687406 281687494 -506170 - L1PB4 LINE L1 -6 6150 6055 180 0 0 0 chr1 281687827 281687847 -505817 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 574 299 66 25 chr1 281688098 281688339 -505325 + MIR SINE MIR 12 262 0 1241 186 31 55 chr1 281689099 281689390 -504274 - AluJo SINE Alu -28 284 1 248 363 0 0 chr1 281690262 281690364 -503300 - MER5A DNA MER1_type -83 106 5 1761 191 88 30 chr1 281690735 281691169 -502495 - LTR2B LTR ERV1 0 490 32 10473 71 2 0 chr1 281691188 281692523 -501141 - Harlequin LTR ERV1 -1 6895 5558 6113 107 8 26 chr1 281692623 281693569 -500095 + MER11C LTR ERVK 143 1071 0 895 216 20 62 chr1 281693642 281693772 -499892 + LTR26E LTR ERV1 321 455 -148 2398 72 0 3 chr1 281693772 281694065 -499599 + AluY SINE Alu 18 309 -2 895 216 20 62 chr1 281694065 281694227 -499437 + LTR26E LTR ERV1 455 603 0 297 219 16 0 chr1 281694227 281694287 -499377 - AluSp SINE Alu -107 196 136 245 250 0 0 chr1 281694953 281695009 -498655 + L1MA6 LINE L1 6194 6249 -51 757 81 0 0 chr1 281695013 281695112 -498552 + HY3 scRNA scRNA 1 99 -2 29 47 0 0 chr1 281695330 281695373 -498291 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr1 281696133 281696163 -497501 + AT_rich Low_complexity Low_complexity 1 30 0 189 94 0 0 chr1 281696488 281696520 -497144 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 926 231 37 26 chr1 281697222 281697490 -496174 - LTR36 LTR ERV1 0 611 341 24 32 0 0 chr1 281697924 281697955 -495709 + AT_rich Low_complexity Low_complexity 1 31 0 2501 224 30 0 chr1 281697996 281698568 -495096 - L1MB3 LINE L1 -17 6166 5578 231 226 0 38 chr1 281698608 281698661 -495003 + Tigger5 DNA MER2_type 2273 2323 0 354 203 76 0 chr1 281698715 281698794 -494870 + Tigger5 DNA MER2_type 2238 2322 -1 1031 228 3 44 chr1 281698844 281699069 -494595 - L1MB3 LINE L1 -1112 5034 4822 1564 202 0 25 chr1 281699069 281699386 -494278 - AluJb SINE Alu 0 312 4 1031 228 3 44 chr1 281699386 281699458 -494206 - L1MB3 LINE L1 -1324 4822 4749 2101 204 163 0 chr1 281699466 281700019 -493645 + L1MB3 LINE L1 4074 4716 -1430 1079 265 30 34 chr1 281700022 281700429 -493235 - L1MB3 LINE L1 -1401 4745 4341 285 270 27 0 chr1 281700429 281700503 -493161 - MLT1H LTR MaLR -334 215 140 494 256 11 17 chr1 281700503 281700679 -492985 - L1MB3 LINE L1 -1801 4345 4171 2244 75 0 0 chr1 281700792 281701085 -492579 + L1PA6 LINE L1 5861 6153 -1 274 267 0 13 chr1 281701160 281701235 -492429 + MIR SINE MIR 72 145 -117 23 33 0 0 chr1 281701246 281701276 -492388 + AT_rich Low_complexity Low_complexity 1 30 0 559 178 19 13 chr1 281701440 281701597 -492067 + GA-rich Low_complexity Low_complexity 3 160 0 2193 123 0 0 chr1 281701902 281702235 -491429 + AluSx SINE Alu 1 333 0 226 0 59 0 chr1 281702364 281702398 -491266 + (TG)n Simple_repeat Simple_repeat 2 37 0 303 314 74 45 chr1 281704422 281704664 -489000 + L1ME LINE L1 5363 5611 -2197 218 216 26 9 chr1 281704680 281704796 -488868 + (TA)n Simple_repeat Simple_repeat 1 118 0 433 272 35 0 chr1 281704832 281705005 -488659 + (TA)n Simple_repeat Simple_repeat 2 180 0 332 226 108 17 chr1 281705033 281705163 -488501 + L1ME LINE L1 5660 5804 -358 371 326 102 51 chr1 281705178 281705570 -488094 + L1ME3A LINE L1 5410 5821 -349 237 270 36 73 chr1 281705698 281705835 -487829 + L1ME3A LINE L1 5962 6093 -77 21 0 0 0 chr1 281705935 281705956 -487708 + AT_rich Low_complexity Low_complexity 1 21 0 2328 168 41 39 chr1 281706254 281706779 -486885 + MER41B LTR ERV1 96 466 -12 14361 34 7 2 chr1 281708798 281711303 -482361 - L1PA4 LINE L1 -17 6138 3625 22428 53 2 0 chr1 281711408 281714288 -479376 - L1PA4 LINE L1 -2526 3620 735 2011 192 16 23 chr1 281714575 281715008 -478656 + Tigger2a DNA MER2_type 5 434 0 7567 21 6 0 chr1 281715293 281716704 -476960 + L1PA3 LINE L1 4757 6172 0 222 218 0 0 chr1 281716707 281716762 -476902 + A-rich Low_complexity Low_complexity 1 55 0 759 71 0 0 chr1 281718574 281718673 -474991 + HY3 scRNA scRNA 1 99 -2 22 70 0 0 chr1 281718757 281718800 -474864 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr1 281718907 281718939 -474725 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr1 281719671 281719701 -473963 + AT_rich Low_complexity Low_complexity 1 30 0 244 216 0 0 chr1 281720576 281720627 -473037 + (ATG)n Simple_repeat Simple_repeat 3 53 0 363 270 153 63 chr1 281721367 281721667 -471997 + MER31-int LTR ERV1 5094 5420 -911 214 211 0 0 chr1 281721686 281721724 -471940 + T-rich Low_complexity Low_complexity 1 38 0 348 259 41 41 chr1 281721739 281721886 -471778 + MER31-int LTR ERV1 4147 4293 -643 223 333 11 23 chr1 281721918 281722005 -471659 + MIR SINE MIR 60 145 -63 2115 36 18 29 chr1 281722525 281722802 -470862 + L1PA4 LINE L1 5880 6153 -2 1538 211 25 3 chr1 281722828 281723184 -470480 + L1MB3 LINE L1 5803 6166 -17 246 32 0 0 chr1 281723649 281723680 -469984 + (TAA)n Simple_repeat Simple_repeat 1 31 0 1075 204 46 84 chr1 281723686 281724150 -469514 + LTR36 LTR ERV1 72 590 -21 344 310 103 7 chr1 281724640 281724785 -468879 - MIR SINE MIR -22 240 82 295 205 0 25 chr1 281724792 281724914 -468750 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 27 87 0 0 chr1 281725020 281725089 -468575 + AT_rich Low_complexity Low_complexity 1 69 0 187 400 12 0 chr1 281725551 281725636 -468028 - MIR SINE MIR -63 145 60 2505 50 0 0 chr1 281725795 281726092 -467572 + AluY SINE Alu 1 297 -14 25 0 0 0 chr1 281726503 281726528 -467136 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr1 281726921 281726951 -466713 + AT_rich Low_complexity Low_complexity 1 30 0 365 235 0 0 chr1 281727877 281727975 -465689 - L1MA6 LINE L1 -7 6293 6196 912 163 0 0 chr1 281728103 281728250 -465414 + L1P3 LINE L1 10 156 -6305 3616 74 2 0 chr1 281728252 281728727 -464937 + L1PA6 LINE L1 5678 6153 -1 284 256 12 12 chr1 281729478 281729538 -464126 + FRAM/FAM SINE Alu 1 59 -107 400 252 19 9 chr1 281729538 281729645 -464019 - LTR26E LTR ERV1 0 603 496 689 87 148 0 chr1 281729650 281729765 -463899 - LTR12 LTR ERV1 -236 478 347 * 725 157 0 0 chr1 281729761 281729869 -463795 - LTR12 LTR ERV1 -601 113 6 819 308 45 27 chr1 281729869 281730273 -463391 - LTR26E LTR ERV1 -96 526 89 286 224 30 0 chr1 281730350 281730417 -463247 + FLAM SINE Alu 57 125 -8 396 298 49 96 chr1 281730679 281731045 -462619 + MER34 LTR ERV1 159 507 -35 10977 133 13 0 chr1 281731109 281732851 -460813 + L1P LINE L1 2501 4265 -1881 8751 111 4 21 chr1 281732851 281734206 -459458 - L1P LINE L1 -3362 2784 1453 304 246 0 0 chr1 281734205 281734274 -459390 - L1MA9 LINE L1 -157 6155 6087 * 308 235 12 12 chr1 281734287 281734372 -459292 + LTR26 LTR ERV1 510 594 -9 311 239 0 18 chr1 281735261 281735370 -458294 + L1MA6 LINE L1 6193 6299 -1 285 29 0 0 chr1 281735805 281735839 -457825 + (CA)n Simple_repeat Simple_repeat 1 34 0 1072 230 34 84 chr1 281735856 281736295 -457369 + MER45R DNA AcHobo 294 710 -871 1845 159 44 8 chr1 281736350 281736734 -456930 + L1 LINE L1 4462 4859 -1287 1775 199 21 42 chr1 281736738 281737169 -456495 - L1MA3 LINE L1 -1 6304 5883 712 207 12 12 chr1 281737159 281737328 -456336 + L1 LINE L1 4849 5017 -1129 * 33291 67 6 4 chr1 281739045 281743321 -450343 - Harlequin LTR ERV1 -641 6255 1972 214 255 0 0 chr1 281744265 281744316 -449348 + (ATG)n Simple_repeat Simple_repeat 3 53 0 674 269 102 35 chr1 281745083 281745366 -448298 + MER31-int LTR ERV1 3815 4116 -820 215 213 13 0 chr1 281746318 281746393 -447271 + (TA)n Simple_repeat Simple_repeat 1 76 0 2466 214 45 0 chr1 281746816 281747394 -446270 - L1MB3 LINE L1 -2 6181 5578 256 239 0 30 chr1 281747420 281747487 -446177 + Tigger5 DNA MER2_type 2259 2323 0 449 191 12 0 chr1 281747541 281747625 -446039 + Tigger5 DNA MER2_type 2238 2322 -1 706 268 22 9 chr1 281747671 281747902 -445762 - L1MB3 LINE L1 -1108 5038 4805 314 60 0 40 chr1 281747907 281747957 -445707 + (TTCTCC)n Simple_repeat Simple_repeat 5 52 0 1547 207 17 3 chr1 281747970 281748270 -445394 - AluJb SINE Alu -8 304 1 332 197 28 0 chr1 281748270 281748341 -445323 - L1MB3 LINE L1 -1327 4819 4747 * 1507 174 11 0 chr1 281748337 281748648 -445016 + L1M4 LINE L1 4064 4377 -1769 21 0 0 0 chr1 281748941 281748962 -444702 + AT_rich Low_complexity Low_complexity 1 21 0 215 59 0 29 chr1 281748968 281749002 -444662 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 325 49 0 0 chr1 281749002 281749043 -444621 - L1PA4 LINE L1 -11 6144 6104 252 33 0 0 chr1 281749081 281749111 -444553 + L1PA4 LINE L1 6068 6097 -58 222 105 0 0 chr1 281750579 281750617 -443047 + (CAAAA)n Simple_repeat Simple_repeat 5 42 0 21 71 0 0 chr1 281751710 281751752 -441912 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr1 281751923 281751945 -441719 + AT_rich Low_complexity Low_complexity 1 22 0 683 53 53 0 chr1 281751954 281752048 -441616 - HY3 scRNA scRNA -2 99 1 247 236 0 0 chr1 281752049 281752104 -441560 - L1MA4 LINE L1 -47 6253 6199 333 217 12 24 chr1 281752778 281752838 -440826 + FRAM/FAM SINE Alu 1 58 -108 1089 278 37 29 chr1 281752838 281753271 -440393 - LTR26E LTR ERV1 0 603 168 244 301 16 8 chr1 281753472 281753595 -440069 + L1M4 LINE L1 4559 4682 -1464 1224 202 91 8 chr1 281754191 281754542 -439122 - L1MA9 LINE L1 -46 6266 5887 2433 59 0 3 chr1 281754629 281754933 -438731 - AluY SINE Alu -8 303 1 1323 199 5 8 chr1 281755230 281755523 -438141 - L1PA16 LINE L1 -196 5972 5679 1363 71 5 49 chr1 281755623 281755807 -437857 - AluSp SINE Alu -134 179 4 920 190 10 30 chr1 281755880 281756080 -437584 - AluJb SINE Alu -32 280 85 4746 155 34 10 chr1 281756144 281757015 -436649 - Tigger3(Golem) DNA MER2_type 0 3029 2138 2140 99 7 7 chr1 281757179 281757483 -436181 - AluSg SINE Alu -4 306 3 315 293 86 93 chr1 281757792 281757887 -435777 - L1MC/D LINE L1 -2183 5625 5531 1874 159 31 3 chr1 281757887 281758177 -435487 + AluSx SINE Alu 1 298 -14 315 293 86 93 chr1 281758177 281758405 -435259 - L1MC/D LINE L1 -2277 5531 5304 2073 124 0 0 chr1 281758503 281758817 -434847 - AluSx SINE Alu 0 314 1 31 44 0 0 chr1 281758980 281759025 -434639 + AT_rich Low_complexity Low_complexity 1 45 0 190 122 122 0 chr1 281759328 281759369 -434295 - MIR SINE MIR -96 166 121 1700 163 20 43 chr1 281759562 281759912 -433752 - Tigger2a DNA MER2_type -91 343 2 532 228 103 2 chr1 281762218 281762394 -431270 - L1MA9 LINE L1 -6 6162 6074 21 0 0 0 chr1 281762900 281762921 -430743 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr1 281764382 281764412 -429252 + (TA)n Simple_repeat Simple_repeat 2 31 0 420 298 23 0 chr1 281764412 281764543 -429121 + LTR33 LTR ERVL 22 155 -366 264 250 0 0 chr1 281764643 281764719 -428945 + (CCCG)n Simple_repeat Simple_repeat 4 79 0 1238 233 169 3 chr1 281765282 281765630 -428034 + L1MC4 LINE L1 7269 7674 -368 2970 181 48 25 chr1 281765698 281766296 -427368 + LTR9 LTR ERV1 1 612 0 31 82 0 0 chr1 281766372 281766445 -427219 + AT_rich Low_complexity Low_complexity 1 73 0 1550 180 0 43 chr1 281766752 281767052 -426612 - AluJb SINE Alu -25 287 1 268 315 63 31 chr1 281767409 281767536 -426128 + HAL1 LINE L1 755 885 -1622 1910 222 35 74 chr1 281767560 281768128 -425536 - MLT2B3 LTR ERVL -8 546 1 4500 211 190 27 chr1 281768258 281769380 -424284 + L1M1 LINE L1 3313 4251 -3314 1969 121 6 51 chr1 281769380 281769694 -423970 - AluSq SINE Alu -13 300 1 4500 211 190 27 chr1 281769694 281770475 -423189 + L1M1 LINE L1 4251 5536 -2029 848 219 29 0 chr1 281770479 281770684 -422980 + L1MA9 LINE L1 6064 6274 -38 396 265 61 0 chr1 281770714 281770846 -422818 + L2 LINE L2 2709 2848 -466 30 0 0 0 chr1 281771221 281771251 -422413 + AT_rich Low_complexity Low_complexity 1 30 0 4620 141 60 7 chr1 281771251 281772105 -421559 - L1MA3 LINE L1 0 6305 5407 2040 125 0 7 chr1 281773509 281773813 -419851 - AluSx SINE Alu -10 302 1 23 54 0 0 chr1 281774431 281774468 -419196 + AT_rich Low_complexity Low_complexity 1 37 0 197 146 21 0 chr1 281776222 281776270 -417394 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr1 281776712 281776740 -416924 + AT_rich Low_complexity Low_complexity 1 28 0 187 205 26 0 chr1 281777545 281777584 -416080 + MIR SINE MIR 164 203 -59 3261 39 0 0 chr1 281778430 281778820 -414844 + L1PA3 LINE L1 5766 6155 0 25 0 0 0 chr1 281778820 281778845 -414819 + AT_rich Low_complexity Low_complexity 1 25 0 13604 28 0 0 chr1 281778995 281781371 -412293 + L1PA3 LINE L1 3776 6152 -3 317 350 55 25 chr1 281781575 281781775 -411889 - L2 LINE L2 -2724 590 385 296 276 35 17 chr1 281782453 281782569 -411095 + L2 LINE L2 2460 2577 -737 43 92 0 0 chr1 281783348 281783468 -410196 + AT_rich Low_complexity Low_complexity 1 120 0 24 32 0 0 chr1 281783674 281783705 -409959 + AT_rich Low_complexity Low_complexity 1 31 0 200 94 19 75 chr1 281783764 281783817 -409847 + (TTTTTA)n Simple_repeat Simple_repeat 6 55 0 333 197 0 16 chr1 281783819 281783880 -409784 + Tigger5 DNA MER2_type 2264 2323 0 2442 185 22 9 chr1 281783890 281784472 -409192 + L1MA8 LINE L1 5202 5789 -502 338 262 8 0 chr1 281784475 281784597 -409067 + (TA)n Simple_repeat Simple_repeat 2 124 0 2126 167 71 4 chr1 281784597 281785063 -408601 + L1MA8 LINE L1 5782 6278 -13 4833 68 6 0 chr1 281785173 281785805 -407859 + L1PA7 LINE L1 5516 6151 -3 24 0 0 0 chr1 281785879 281785903 -407761 + AT_rich Low_complexity Low_complexity 1 24 0 32 57 0 0 chr1 281786167 281786220 -407444 + AT_rich Low_complexity Low_complexity 1 53 0 8484 32 7 0 chr1 281787387 281789232 -404432 - L1PA3 LINE L1 0 6155 4300 5182 21 2 0 chr1 281789231 281789859 -403805 + L1PA3 LINE L1 3664 4292 -1854 * 1573 127 0 0 chr1 281790421 281790657 -403007 + L1PA16 LINE L1 5922 6157 -9 1948 156 31 26 chr1 281790674 281791064 -402600 - L1MA8 LINE L1 -7 6284 5893 687 91 0 0 chr1 281792757 281792856 -400808 - L1MA8 LINE L1 -655 5649 5551 843 83 17 0 chr1 281792856 281792976 -400688 + L1MA2 LINE L1 6183 6304 0 256 293 21 14 chr1 281793729 281793869 -399795 - L1MEc LINE L1 -5217 1179 1039 802 255 28 15 chr1 281793955 281794281 -399383 + L1M3 LINE L1 4865 5194 -952 1124 237 26 20 chr1 281794358 281794700 -398964 - MLT1A1 LTR MaLR -18 347 4 1822 234 38 38 chr1 281794704 281795194 -398470 + L1 LINE L1 3068 3560 -2586 1759 203 0 3 chr1 281795194 281795489 -398175 - AluJb SINE Alu -18 294 1 1822 234 38 38 chr1 281795489 281795762 -397902 + L1 LINE L1 3559 3831 -2315 1053 189 78 96 chr1 281795765 281796098 -397566 - MER66A LTR ERV1 -3 475 149 1264 190 97 0 chr1 281796267 281796525 -397139 - MER66A-int LTR ERV1 0 6676 6394 4243 223 122 103 chr1 281796530 281798975 -394689 - MER66-int LTR ERV1 -1748 4928 2437 8961 185 46 9 chr1 281799022 281800808 -392856 - MER66-int LTR ERV1 -4515 2161 310 2643 90 18 3 chr1 281800816 281801203 -392461 + MLT2A2 LTR ERVL 1 393 -60 206 200 0 0 chr1 281801204 281801239 -392425 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 311 0 0 chr1 281801239 281801329 -392335 + L1MC4 LINE L1 6614 6703 -1339 327 311 0 0 chr1 281801301 281801391 -392273 - L1MC4 LINE L1 -1339 6703 6614 361 75 0 0 chr1 281801402 281801455 -392209 + MLT2A2 LTR ERVL 401 453 0 30646 170 25 19 chr1 281801456 281802432 -391232 + ERVL-A2-A2 LTR ERVL 2 970 -4794 2142 135 3 0 chr1 281802432 281802735 -390929 + AluSq SINE Alu 1 304 -9 30646 170 25 19 chr1 281802735 281807475 -386189 + ERVL-A2-A2 LTR ERVL 970 5755 -9 2374 122 22 22 chr1 281807477 281807878 -385786 + MLT2A2 LTR ERVL 1 401 -52 2118 142 0 7 chr1 281807962 281808271 -385393 + AluSx SINE Alu 1 307 -5 1138 196 61 30 chr1 281808271 281808634 -385030 + L1M3 LINE L1 5183 5573 -598 9989 145 17 13 chr1 281808751 281811267 -382397 - L1PA10 LINE L1 -12 6156 3630 1699 152 0 70 chr1 281811267 281811582 -382082 + AluSx SINE Alu 1 293 -19 9989 145 17 13 chr1 281811582 281811652 -382012 - L1PA10 LINE L1 -2538 3630 3562 8937 196 20 45 chr1 281911653 281913552 -280112 - L1M1 LINE L1 -5705 1860 10 191 236 14 0 chr1 281913703 281913775 -279889 + (TA)n Simple_repeat Simple_repeat 2 74 0 358 267 59 64 chr1 281914050 281914237 -279427 + HAL1b LINE L1 749 934 -414 406 187 0 11 chr1 281914413 281914504 -279160 + AluS SINE Alu 1 90 -223 24 0 0 0 chr1 281916011 281916035 -277629 + AT_rich Low_complexity Low_complexity 1 24 0 1130 181 34 4 chr1 281916035 281916272 -277392 - L1PA16 LINE L1 -5 6161 5918 236 364 50 14 chr1 281916764 281916904 -276760 - L2 LINE L2 -19 3253 3109 278 223 85 21 chr1 281917549 281917643 -276021 - L1ME LINE L1 -516 5605 5506 1772 201 0 7 chr1 281918270 281918579 -275085 + AluJb SINE Alu 3 309 -3 186 256 151 0 chr1 281918665 281918751 -274913 - L2 LINE L2 -227 3045 2947 27 29 0 0 chr1 281919056 281919090 -274574 + AT_rich Low_complexity Low_complexity 1 34 0 1161 60 0 0 chr1 281919246 281919395 -274269 - L1PA5 LINE L1 -4 6150 6002 268 299 23 23 chr1 281919395 281919572 -274092 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 388 342 77 30 chr1 281919611 281920041 -273623 - L1M4 LINE L1 -2753 3393 2944 21 82 0 0 chr1 281920127 281920176 -273488 + AT_rich Low_complexity Low_complexity 1 49 0 229 277 149 21 chr1 281920722 281920863 -272801 + L2 LINE L2 3155 3313 0 226 229 96 12 chr1 281920977 281921060 -272604 - L1MC4 LINE L1 -1323 6719 6630 28 29 0 0 chr1 281921102 281921137 -272527 + AT_rich Low_complexity Low_complexity 1 35 0 245 344 129 40 chr1 281921321 281921545 -272119 - MIR SINE MIR -14 248 5 2086 117 33 0 chr1 281921902 281922201 -271463 - AluSq SINE Alu -4 309 1 908 126 0 0 chr1 281925009 281925144 -268520 + L1PA8 LINE L1 6029 6163 -9 1022 197 85 31 chr1 281925508 281925702 -267962 + L1MA9 LINE L1 5972 6185 -127 225 0 0 0 chr1 281925702 281925727 -267937 + (CA)n Simple_repeat Simple_repeat 2 26 0 1022 197 85 31 chr1 281925727 281925823 -267841 + L1MA9 LINE L1 6185 6274 -38 21 57 0 0 chr1 281926801 281926836 -266828 + AT_rich Low_complexity Low_complexity 1 35 0 885 206 0 12 chr1 281927247 281927417 -266247 + FAM SINE Alu 1 168 -7 320 271 108 12 chr1 281928183 281928349 -265315 + MIR SINE MIR 78 259 -3 271 287 16 8 chr1 281929656 281929778 -263886 + (TA)n Simple_repeat Simple_repeat 2 124 0 227 244 61 35 chr1 281929951 281930066 -263598 - MIR SINE MIR -32 230 113 31 26 0 0 chr1 281932196 281932234 -261430 + AT_rich Low_complexity Low_complexity 1 38 0 235 306 0 71 chr1 281932464 281932549 -261115 - L2 LINE L2 -192 3080 3002 234 287 77 56 chr1 281933083 281933226 -260438 - L2 LINE L2 -594 2720 2575 4753 186 40 6 chr1 281933390 281934646 -259018 + L1MB5 LINE L1 4213 5519 -743 827 221 21 12 chr1 281935434 281935591 -258073 - L1M4 LINE L1 -480 5641 5489 697 179 40 13 chr1 281935591 281935741 -257923 + L1MB5 LINE L1 6012 6166 -8 827 221 21 12 chr1 281935741 281935787 -257877 - L1M4 LINE L1 -632 5489 5445 387 0 0 0 chr1 281936287 281936330 -257334 + (TG)n Simple_repeat Simple_repeat 1 43 0 4024 147 21 26 chr1 281938147 281938869 -254795 - LTR62 LTR ERVK -1 718 1 3106 183 81 26 chr1 281939691 281940423 -253241 + L1MC2 LINE L1 5557 6328 -16 261 239 76 11 chr1 281941734 281941826 -251838 + MER117 DNA MER1_type 61 158 -39 314 254 0 28 chr1 281941856 281941927 -251737 + L1PA15-16 LINE L1 1459 1527 -5322 * 3144 257 18 61 chr1 281941910 281943050 -250614 + L1 LINE L1 4137 5226 -920 * 11715 102 3 10 chr1 281943048 281944785 -248879 - L1P LINE L1 -2759 3387 1662 6815 80 0 0 chr1 281944785 281946090 -247574 + L1PA7 LINE L1 4845 6149 -5 4842 138 40 32 chr1 281946107 281947047 -246617 + L1PA16 LINE L1 5211 6156 -10 3141 150 96 15 chr1 281947212 281947817 -245847 - MER4D LTR ERV1 -249 654 1 191 36 36 0 chr1 281948218 281948246 -245418 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2645 161 65 0 chr1 281948246 281948711 -244953 + MER4D LTR ERV1 18 512 -391 355 140 18 0 chr1 281948711 281948779 -244885 - MER4D LTR ERV1 -250 653 417 2683 147 25 97 chr1 281948806 281949412 -244252 + MER4D LTR ERV1 163 724 -179 16976 32 15 0 chr1 281949512 281952324 -241340 + L1PA3 LINE L1 3322 6155 0 2873 70 5 0 chr1 281952358 281952741 -240923 + L1PA5 LINE L1 5770 6154 0 1000 257 43 30 chr1 281952741 281953212 -240452 + L1MCa LINE L1 502 932 -5113 816 173 6 31 chr1 281953215 281953377 -240287 + MLT1C LTR MaLR 3 160 -307 476 246 9 0 chr1 281953382 281953492 -240172 - MER67A LTR ERV1 -31 512 402 779 185 23 29 chr1 281953492 281953665 -239999 + MER67A LTR ERV1 17 188 -355 1415 198 79 18 chr1 281953674 281954003 -239661 - MLT1A1 LTR MaLR -16 349 1 1111 240 48 30 chr1 281954003 281954340 -239324 + MER67A LTR ERV1 201 543 0 1698 258 49 87 chr1 281954423 281955182 -238482 + MER67A-int LTR ERV1 49 778 -4158 302 214 57 0 chr1 281955229 281955299 -238365 + MER67A LTR ERV1 468 541 -2 582 197 80 22 chr1 281955300 281955437 -238227 + MLT1C LTR MaLR 157 301 -166 229 268 24 0 chr1 281955479 281955561 -238103 + L1MCa LINE L1 953 1036 -5528 181 213 27 80 chr1 281955615 281955690 -237974 + L2 LINE L2 2165 2235 -1079 * 469 306 130 33 chr1 281955684 281956014 -237650 + L2 LINE L2 2948 3309 -4 743 166 38 19 chr1 281957240 281957397 -236267 + L1MB1 LINE L1 6014 6173 -16 202 261 0 0 chr1 281957403 281957449 -236215 - L2 LINE L2 -37 3235 3190 22 56 0 0 chr1 281958557 281958593 -235071 + AT_rich Low_complexity Low_complexity 1 36 0 29 47 0 0 chr1 281958614 281958657 -235007 + AT_rich Low_complexity Low_complexity 1 43 0 2215 228 121 10 chr1 281958714 281959543 -234121 - L1 LINE L1 -2358 3788 2868 259 313 0 26 chr1 281959528 281959643 -234021 - L1 LINE L1 -3574 2572 2461 * 728 176 25 0 chr1 281961027 281961186 -232478 + L1MA8 LINE L1 6126 6288 -3 620 304 121 49 chr1 281961301 281961647 -232017 + L2 LINE L2 2943 3313 0 1292 249 42 15 chr1 281961893 281962299 -231365 + L1MA9 LINE L1 5858 6274 -38 24 32 0 0 chr1 281962335 281962366 -231298 + AT_rich Low_complexity Low_complexity 1 31 0 3114 223 9 43 chr1 281962470 281963288 -230376 - L1P LINE L1 -2065 4081 3292 279 241 11 23 chr1 281963456 281963543 -230121 + L1MCa LINE L1 2704 2789 -3775 1435 204 65 7 chr1 281963835 281964110 -229554 + AluJo SINE Alu 1 291 -21 1429 139 10 0 chr1 281964385 281964594 -229070 + AluSg/x SINE Alu 93 303 -7 250 324 22 7 chr1 281964632 281964771 -228893 - L1ME LINE L1 -636 5528 5388 202 246 16 0 chr1 281964771 281964832 -228832 + (TTAA)n Simple_repeat Simple_repeat 1 62 0 30 27 0 0 chr1 281964963 281965000 -228664 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr1 281965128 281965160 -228504 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr1 281965658 281965682 -227982 + AT_rich Low_complexity Low_complexity 1 24 0 1436 170 63 121 chr1 281965947 281966095 -227569 + Tigger3(Golem) DNA MER2_type 5 160 -2869 267 103 0 0 chr1 281966095 281966134 -227530 + (TA)n Simple_repeat Simple_repeat 1 39 0 1436 170 63 121 chr1 281966134 281966349 -227315 + Tigger3(Golem) DNA MER2_type 160 3028 -1 26 30 0 0 chr1 281966381 281966414 -227250 + AT_rich Low_complexity Low_complexity 1 33 0 654 323 60 13 chr1 281966684 281966916 -226748 + MLT1G LTR MaLR 62 304 -286 324 209 43 9 chr1 281967048 281967163 -226501 + (TA)n Simple_repeat Simple_repeat 1 119 0 262 214 35 12 chr1 281967321 281967494 -226170 + (TA)n Simple_repeat Simple_repeat 1 177 0 287 303 9 28 chr1 281969135 281969244 -224420 + MLT1I LTR MaLR 284 390 -19 26 50 0 0 chr1 281971292 281971332 -222332 + AT_rich Low_complexity Low_complexity 1 40 0 193 302 62 31 chr1 281971652 281971748 -221916 + MIR SINE MIR 164 262 0 209 303 101 0 chr1 281971782 281971891 -221773 - MIR SINE MIR -10 252 133 1019 67 0 33 chr1 281972031 281972181 -221483 + L1PA13 LINE L1 6017 6161 -2 210 250 125 10 chr1 281972389 281972485 -221179 + MIR SINE MIR 35 141 -67 259 291 73 61 chr1 281972612 281972777 -220887 - L2 LINE L2 -74 3239 3073 358 139 23 0 chr1 281973223 281973309 -220355 + (TAGA)n Simple_repeat Simple_repeat 3 90 0 639 241 0 0 chr1 281974150 281974295 -219369 + L1MA5 LINE L1 2405 2549 -3597 215 250 0 0 chr1 281974890 281974942 -218722 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1506 196 49 0 chr1 281975617 281975903 -217761 + AluJb SINE Alu 1 300 -12 694 242 11 22 chr1 281976541 281976719 -216945 + MER4D LTR ERV1 21 196 -676 3744 191 16 26 chr1 281976722 281977894 -215770 + L1MA5 LINE L1 4451 5606 -699 1303 175 70 4 chr1 281977895 281978123 -215541 + AluSg SINE Alu 1 243 -67 1666 204 12 3 chr1 281978123 281978467 -215197 + L1MA5 LINE L1 5715 6061 -239 1273 122 49 0 chr1 281978460 281978665 -214999 + L1P5 LINE L1 5542 5756 -395 * 2639 101 96 0 chr1 281978674 281979082 -214582 + LTR7 LTR ERV1 1 447 -3 3300 99 9 2 chr1 281979085 281979550 -214114 + HERVH LTR ERV1 1 468 -7245 * 11549 101 7 9 chr1 281979536 281981227 -212437 + HERVH LTR ERV1 1301 2987 -4726 900 142 20 0 chr1 281981221 281981369 -212295 + HERVH LTR ERV1 3140 3290 -4423 * 7599 109 9 5 chr1 281981359 281982971 -210693 + HERVH LTR ERV1 3492 5286 -1805 26 82 0 0 chr1 281984290 281984351 -209313 + AT_rich Low_complexity Low_complexity 1 61 0 680 200 0 0 chr1 281984450 281984590 -209074 + L1P LINE L1 2009 2148 -3998 2073 133 0 13 chr1 281984590 281984892 -208772 + AluSg SINE Alu 1 298 -12 1542 139 4 19 chr1 281984981 281985247 -208417 + L1 LINE L1 4661 4922 -1224 759 252 58 41 chr1 281985239 281985536 -208128 + L1MCb LINE L1 177 667 -5602 * 7031 52 17 0 chr1 281985525 281986524 -207140 - L1P2 LINE L1 -670 5484 4472 1907 32 0 0 chr1 281986524 281986743 -206921 + L1P1 LINE L1 5491 5709 -445 271 111 0 22 chr1 281986851 281986896 -206768 + L1P1 LINE L1 5739 5782 -373 * 17106 56 64 6 chr1 281986894 281989173 -204491 + L1P LINE L1 10 2420 -3726 795 226 22 44 chr1 281989273 281989548 -204116 + L1MB8 LINE L1 5822 6090 -88 602 279 105 55 chr1 281990001 281990345 -203319 + L2 LINE L2 2953 3313 0 522 301 100 13 chr1 281990562 281990791 -202873 + MIR SINE MIR 13 261 -1 200 330 66 0 chr1 281991207 281991298 -202366 + MIR SINE MIR 123 219 -43 705 111 37 0 chr1 281993775 281993883 -199781 - HY1 scRNA scRNA 0 112 1 25 65 0 0 chr1 281994230 281994276 -199388 + AT_rich Low_complexity Low_complexity 1 46 0 180 250 0 0 chr1 281995800 281995848 -197816 + GA-rich Low_complexity Low_complexity 1 48 0 26 74 0 0 chr1 281996278 281996332 -197332 + AT_rich Low_complexity Low_complexity 1 54 0 2238 79 0 26 chr1 281997751 281998054 -195610 + AluY SINE Alu 1 295 -16 674 287 103 16 chr1 281998562 281998998 -194666 - L1ME3A LINE L1 -6 6164 5691 25 83 0 0 chr1 281999145 281999205 -194459 + AT_rich Low_complexity Low_complexity 1 60 0 618 250 19 0 chr1 281999242 281999402 -194262 - L1ME3A LINE L1 -472 5698 5536 279 248 61 10 chr1 281999403 281999512 -194152 - L1M3 LINE L1 -682 5474 5372 651 286 73 17 chr1 281999571 282000148 -193516 - L1M3 LINE L1 -798 5348 4740 385 127 0 56 chr1 282000731 282000802 -192862 + L1MC4 LINE L1 6730 6796 -1246 * 3665 128 41 11 chr1 282000799 282001500 -192164 - L1P LINE L1 -2802 3344 2623 7925 111 27 14 chr1 282001500 282003541 -190123 + L1PA8 LINE L1 4093 6165 -7 550 285 13 0 chr1 282003621 282003772 -189892 + MER63A DNA MER1_type 58 210 0 1883 134 29 10 chr1 282003927 282004233 -189431 - AluSx SINE Alu 0 312 1 4278 158 54 1 chr1 282004245 282005467 -188197 - L1PA13 LINE L1 -133 6030 4752 1488 99 95 8 chr1 282005700 282005942 -187722 + MSTA LTR MaLR 166 428 0 4070 208 44 15 chr1 282006095 282006323 -187341 - Charlie5 DNA MER1_type -479 2145 1925 2249 93 0 7 chr1 282006323 282006613 -187051 + AluSx SINE Alu 7 294 -18 4070 208 44 15 chr1 282006613 282007512 -186152 - Charlie5 DNA MER1_type -699 1925 985 317 184 19 177 chr1 282007531 282007689 -185975 + MER5B DNA MER1_type 17 149 -29 2239 79 3 10 chr1 282007710 282008001 -185663 + AluY SINE Alu 1 289 -22 2390 83 7 0 chr1 282009838 282010140 -183524 - AluSp SINE Alu -9 304 1 22 0 0 0 chr1 282010143 282010165 -183499 + AT_rich Low_complexity Low_complexity 1 22 0 596 269 87 19 chr1 282010788 282010996 -182668 - L2 LINE L2 -90 3223 3002 326 346 30 15 chr1 282011414 282011547 -182117 + MER115 DNA AcHobo 71 205 -488 566 292 173 10 chr1 282011579 282011891 -181773 + MER115 DNA AcHobo 329 691 -2 2521 59 0 0 chr1 282012107 282012412 -181252 + AluY SINE Alu 1 305 -6 799 175 39 0 chr1 282012614 282012768 -180896 - MER3 DNA MER1_type -79 130 18 292 313 97 23 chr1 282012914 282013131 -180533 + L1MC4a LINE L1 5684 5916 -1892 22 0 0 0 chr1 282013724 282013746 -179918 + AT_rich Low_complexity Low_complexity 1 22 0 438 301 79 15 chr1 282014843 282015046 -178618 - MIR SINE MIR -14 248 33 207 271 75 75 chr1 282015029 282015162 -178502 + L2 LINE L2 3133 3265 -7 * 397 272 48 24 chr1 282016383 282016508 -177156 + L2 LINE L2 3144 3271 -1 532 133 0 0 chr1 282016613 282016703 -176961 + L1M3 LINE L1 5731 5820 -348 * 7938 115 11 21 chr1 282016699 282018061 -175603 - L1P LINE L1 -2222 3924 2576 553 244 58 43 chr1 282018084 282018337 -175327 + MER57-int LTR ERV1 3 300 -7237 717 241 104 2 chr1 282019267 282019550 -174114 + MER34C LTR ERV1 59 413 -172 303 229 147 47 chr1 282019754 282019924 -173740 + MER57-int LTR ERV1 1011 1197 -3739 411 296 131 0 chr1 282019929 282020135 -173529 + MER57A LTR ERV1 169 401 -2 365 252 39 19 chr1 282021933 282022036 -171628 - L1MC4 LINE L1 -1323 6719 6615 230 307 43 7 chr1 282022312 282022452 -171212 - L1ME LINE L1 -704 5460 5316 2042 139 7 0 chr1 282022557 282022859 -170805 - AluSq SINE Alu -9 304 1 377 356 49 36 chr1 282023410 282023635 -170029 + MIR SINE MIR 13 240 -22 292 343 43 14 chr1 282023874 282024014 -169650 - MER5A DNA MER1_type -10 179 36 363 44 0 0 chr1 282025622 282025667 -167997 + (CA)n Simple_repeat Simple_repeat 2 46 0 214 183 29 58 chr1 282027133 282027237 -166427 + (TATAA)n Simple_repeat Simple_repeat 3 103 0 268 260 26 0 chr1 282027360 282027437 -166227 - L1MD3 LINE L1 -28 7967 7889 432 339 78 13 chr1 282027482 282027865 -165799 - HAL1 LINE L1 -2021 486 79 248 127 0 48 chr1 282027901 282027964 -165700 - L1MEc LINE L1 -4738 1658 1599 726 257 25 18 chr1 282028056 282028336 -165328 - L1M4 LINE L1 -3212 2934 2653 437 82 0 0 chr1 282028675 282028736 -164928 + MADE1 DNA Mariner 1 61 -19 6899 38 11 11 chr1 282029048 282030303 -163361 - SVA Other Other -954 1386 53 438 0 0 46 chr1 282030303 282030368 -163296 + (GGGAGA)n Simple_repeat Simple_repeat 3 64 0 369 315 9 0 chr1 282031746 282031854 -161810 - L2 LINE L2 -28 3244 3136 250 176 44 44 chr1 282032589 282032748 -160916 + (TA)n Simple_repeat Simple_repeat 2 160 0 25 0 0 0 chr1 282033360 282033385 -160279 + AT_rich Low_complexity Low_complexity 1 25 0 394 69 0 0 chr1 282033423 282033481 -160183 - L1PA16 LINE L1 -2 6164 6107 21 0 0 0 chr1 282034014 282034035 -159629 + AT_rich Low_complexity Low_complexity 1 21 0 536 223 0 0 chr1 282034257 282034369 -159295 - MSTC LTR MaLR -53 375 264 1104 173 96 36 chr1 282035143 282035392 -158272 - MSTC LTR MaLR -123 305 42 1015 126 0 0 chr1 282035435 282035586 -158078 - L1MA1 LINE L1 -4 6298 6148 749 125 17 0 chr1 282035586 282035706 -157958 - L1PA15 LINE L1 -24 6141 6020 378 181 0 0 chr1 282035708 282035791 -157873 - MER4D-int LTR ERV1 -3210 3388 3306 2304 168 77 0 chr1 282035797 282036214 -157450 - LTR47A LTR ERVL 0 452 4 3510 170 86 59 chr1 282036245 282037831 -155833 - MER4D-int LTR ERV1 -3255 3950 729 905 200 70 37 chr1 282037904 282038174 -155490 - MER4D-int LTR ERV1 -6391 367 89 537 103 32 55 chr1 282038178 282038303 -155361 + MER51C LTR ERV1 1 101 -539 232 143 24 0 chr1 282038270 282038312 -155352 + MER51C LTR ERV1 598 640 0 * 307 204 32 86 chr1 282038313 282038406 -155258 - MER4D-int LTR ERV1 -6667 91 4 1868 142 78 8 chr1 282038408 282038767 -154897 - MER4D LTR ERV1 0 903 520 566 137 11 0 chr1 282038767 282038862 -154802 - MER4D LTR ERV1 -327 576 481 1891 166 14 14 chr1 282038962 282039330 -154334 - MER4D LTR ERV1 -373 530 163 299 149 104 0 chr1 282039357 282039424 -154240 + MER4D LTR ERV1 580 653 -250 2445 147 76 7 chr1 282039424 282039887 -153777 - MER4D LTR ERV1 -391 512 18 207 0 0 0 chr1 282039887 282039910 -153754 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3912 162 91 12 chr1 282040317 282041146 -152518 + MER4D LTR ERV1 7 900 -3 680 266 26 22 chr1 282041200 282041426 -152238 + MER39 LTR ERV1 249 475 -232 263 234 63 36 chr1 282041958 282042069 -151595 + LTR35 LTR ERV1 1 114 -504 681 237 51 38 chr1 282042191 282042526 -151138 + LTR35 LTR ERV1 351 618 0 1933 134 137 18 chr1 282042623 282043004 -150660 + MSTA LTR MaLR 3 428 0 387 292 98 13 chr1 282043017 282043332 -150332 - L1ME3A LINE L1 -208 5962 5621 291 307 18 18 chr1 282043333 282043499 -150165 - L1ME3A LINE L1 -741 5423 5258 953 311 174 57 chr1 282043826 282045225 -148439 + L2 LINE L2 1752 3308 -5 330 315 68 36 chr1 282045244 282045463 -148201 - L1ME3A LINE L1 -1299 4847 4622 180 77 0 0 chr1 282045477 282045503 -148161 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 975 182 119 4 chr1 282045875 282046128 -147536 + L1MB4 LINE L1 5652 5933 -247 2535 140 13 16 chr1 282046129 282046580 -147084 + LTR3b LTR ERVK 1 450 -50 534 249 108 5 chr1 282046807 282046992 -146672 + HERVK3 LTR ERVK 69 272 -6971 2994 201 56 51 chr1 282047128 282048340 -145324 + HERVK3 LTR ERVK 1321 5445 -500 1588 201 79 13 chr1 282048409 282048877 -144787 + LTR3b LTR ERVK 2 500 0 561 197 61 14 chr1 282048877 282049024 -144640 + L1MB4 LINE L1 5929 6082 -98 682 181 87 181 chr1 282049024 282049495 -144169 - LTR23 LTR ERV1 0 437 11 296 194 244 25 chr1 282049541 282049701 -143963 + MER69 DNA AcHobo 2018 2212 -314 321 150 184 27 chr1 282049795 282049942 -143722 + MER69 DNA AcHobo 2350 2519 -7 22 0 0 0 chr1 282052653 282052675 -140989 + AT_rich Low_complexity Low_complexity 1 22 0 461 216 193 0 chr1 282054409 282054627 -139037 - MER33 DNA MER1_type 0 363 104 253 344 0 0 chr1 282054598 282054691 -138973 - MER33 DNA MER1_type -231 93 1 * 1198 199 40 23 chr1 282056983 282057285 -136379 - MER44D DNA MER2_type -1 604 426 2223 115 43 6 chr1 282057321 282057670 -135994 + THE1B LTR MaLR 1 362 -2 1106 165 25 133 chr1 282058912 282059377 -134287 + MER4A LTR ERV1 2 262 -203 723 235 11 5 chr1 282059434 282059621 -134043 + MER4C LTR ERV1 278 465 0 222 91 0 0 chr1 282060926 282060959 -132705 + (CACCT)n Simple_repeat Simple_repeat 2 34 0 190 132 53 26 chr1 282061278 282061316 -132348 + MIR SINE MIR 214 252 -10 1583 187 146 19 chr1 282062332 282062941 -130723 + Tigger7 DNA MER2_type 69 2483 -4 270 81 0 0 chr1 282064230 282064267 -129397 + (T)n Simple_repeat Simple_repeat 1 37 0 342 234 28 9 chr1 282064655 282064762 -128902 + (CA)n Simple_repeat Simple_repeat 2 110 0 2184 129 0 7 chr1 282065893 282066203 -127461 - AluSq SINE Alu -5 308 1 313 277 116 42 chr1 282066926 282067125 -126539 - MIR SINE MIR -46 216 4 311 284 39 0 chr1 282070332 282070434 -123230 + L1ME3A LINE L1 6065 6170 0 31 0 0 0 chr1 282070584 282070615 -123049 + AT_rich Low_complexity Low_complexity 1 31 0 214 277 139 28 chr1 282070730 282070928 -122736 - MIR3 SINE MIR -47 215 2 2121 110 17 3 chr1 282070954 282071246 -122418 + AluSx SINE Alu 1 296 -16 187 352 0 0 chr1 282072245 282072316 -121348 + L2 LINE L2 3243 3313 0 249 301 59 33 chr1 282073245 282073398 -120266 - L1ME LINE L1 -335 5786 5630 210 125 16 31 chr1 282075968 282076032 -117632 + A-rich Low_complexity Low_complexity 2 64 0 208 269 0 0 chr1 282076368 282076420 -117244 + T-rich Low_complexity Low_complexity 1 52 0 2035 183 58 11 chr1 282076764 282077233 -116431 + MER4D LTR ERV1 1 491 -412 1207 172 21 0 chr1 282077604 282077837 -115827 + MER2 DNA MER2_type 1 238 -107 3163 204 48 19 chr1 282077837 282078727 -114937 + L1MA2 LINE L1 17 1106 -6459 392 194 0 0 chr1 282078732 282078804 -114860 + L1MA2 LINE L1 5512 5583 -1982 186 156 0 0 chr1 282078814 282078859 -114805 + (TA)n Simple_repeat Simple_repeat 2 46 0 5449 166 46 18 chr1 282078859 282080949 -112715 + L1MA2 LINE L1 5571 7722 -1 204 333 98 33 chr1 282081887 282082040 -111624 + L2 LINE L2 3115 3277 -36 1653 188 0 24 chr1 282082552 282082844 -110820 - AluJo SINE Alu -25 287 3 295 259 0 11 chr1 282082847 282082871 -110793 + (TA)n Simple_repeat Simple_repeat 2 25 -148 2457 102 14 0 chr1 282082871 282083235 -110429 - L1PB1 LINE L1 -1 6150 5782 295 259 0 11 chr1 282083235 282083384 -110280 + (TA)n Simple_repeat Simple_repeat 25 173 0 7707 189 39 38 chr1 282083387 282086168 -107496 - L1PB1 LINE L1 -380 5771 2997 1183 167 22 4 chr1 282086165 282086393 -107271 + L1MA7 LINE L1 5614 5845 -446 * 579 158 112 13 chr1 282086473 282086677 -106987 + L1MA7 LINE L1 6064 6288 -3 420 279 81 12 chr1 282086812 282086984 -106680 - L1M4 LINE L1 -3021 3125 2942 352 286 64 29 chr1 282086993 282087164 -106500 - L1M4 LINE L1 -3409 2737 2561 2854 222 156 2 chr1 282087190 282088294 -105370 + L1 LINE L1 2879 4152 -1994 227 307 59 33 chr1 282089107 282089260 -104404 + L1ME LINE L1 5630 5786 -335 374 175 97 35 chr1 282089894 282090008 -103656 - L1MA4 LINE L1 -41 6259 6139 221 262 90 69 chr1 282090573 282090718 -102946 + MIR SINE MIR 107 254 -8 1291 234 53 39 chr1 282090817 282091253 -102411 - MLT1D LTR MaLR -59 446 5 486 286 204 37 chr1 282091913 282092525 -101139 - L2 LINE L2 -9 3304 2579 1651 176 50 0 chr1 282092595 282092874 -100790 - AluJo SINE Alu -19 293 1 392 192 152 20 chr1 282093369 282093520 -100144 - MER53 DNA DNA -16 173 3 715 250 20 15 chr1 282094143 282094347 -99317 + L1PB4 LINE L1 5952 6156 0 254 330 18 54 chr1 282094471 282094583 -99081 - L2 LINE L2 -9 3304 3197 875 314 245 23 chr1 282096586 282096971 -96693 - L2 LINE L2 -522 2792 2494 1562 188 17 7 chr1 282096971 282097258 -96406 + AluJb SINE Alu 1 290 -22 875 314 245 23 chr1 282097258 282098109 -95555 - L2 LINE L2 -820 2494 1281 319 252 35 26 chr1 282098858 282098973 -94691 + MIR SINE MIR 19 134 -128 309 241 108 103 chr1 282099863 282100066 -93598 - L1ME3A LINE L1 -7 6163 5960 226 273 45 11 chr1 282100071 282100159 -93505 - L1MD3 LINE L1 -20 7975 7885 1556 108 14 5 chr1 282100161 282100374 -93290 - AluSq SINE Alu -26 287 73 1960 182 24 0 chr1 282100376 282100755 -92909 + LTR34 LTR ERV1 275 662 -37 2497 176 40 13 chr1 282100955 282101542 -92122 - MER4B LTR ERV1 0 779 3 325 130 0 0 chr1 282102239 282102293 -91371 - FRAM/FAM SINE Alu -94 81 28 268 248 8 8 chr1 282102294 282102423 -91241 + (TA)n Simple_repeat Simple_repeat 1 129 0 516 282 113 42 chr1 282102499 282102879 -90785 - HAL1 LINE L1 -605 1902 1496 405 276 74 82 chr1 282102931 282103188 -90476 - HAL1 LINE L1 -1086 1421 1167 428 294 226 23 chr1 282103231 282104044 -89620 - HAL1 LINE L1 -1456 1051 74 800 154 100 58 chr1 282104147 282104387 -89277 - L1MA8 LINE L1 -6 6285 6036 3528 199 51 42 chr1 282104487 282108817 -84847 - L1PA16 LINE L1 -3 7601 3082 427 202 74 37 chr1 282108818 282108953 -84711 + L1PA12 LINE L1 2396 2528 -5046 249 350 0 0 chr1 282108971 282109068 -84596 - L1PA16 LINE L1 -5606 1975 1879 4567 209 50 11 chr1 282109118 282110250 -83414 - L1PA12 LINE L1 -4524 3057 1882 543 162 0 0 chr1 282110445 282110544 -83120 - L1MA6 LINE L1 0 6300 6202 550 136 121 0 chr1 282110570 282110702 -82962 - L1MA7 LINE L1 -2 6289 6142 244 306 94 0 chr1 282112675 282112760 -80904 - L2 LINE L2 -1 3271 3179 23 33 0 0 chr1 282113694 282113724 -79940 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr1 282114411 282114456 -79208 + AT_rich Low_complexity Low_complexity 1 45 0 1531 266 65 14 chr1 282115399 282116171 -77493 + L1M4 LINE L1 4411 5221 -925 1203 282 20 61 chr1 282116169 282116776 -76888 + L1M3e LINE L1 469 1050 -6439 * 1047 237 119 27 chr1 282116797 282117575 -76089 + L1M3e LINE L1 2160 2971 -4525 1887 151 0 0 chr1 282118183 282118489 -75175 - AluSx SINE Alu 0 306 1 274 235 37 49 chr1 282118980 282119061 -74603 - MIR SINE MIR -168 94 15 5703 136 41 8 chr1 282119597 282121458 -72206 + L1PBa LINE L1 1 2083 -4780 4673 189 32 16 chr1 282122128 282123386 -70278 - L1M LINE L1 -743 5403 4138 6107 225 86 15 chr1 282123548 282125863 -67801 - L1 LINE L1 -1772 5793 3316 237 330 85 0 chr1 282126347 282126453 -67211 + L2 LINE L2 2629 2743 -571 25 51 0 0 chr1 282126826 282126865 -66799 + AT_rich Low_complexity Low_complexity 1 39 0 487 304 85 46 chr1 282127273 282127556 -66108 - L1MC4 LINE L1 -3 8039 7746 232 226 52 70 chr1 282129384 282129499 -64165 + MIR SINE MIR 110 222 -40 207 228 18 0 chr1 282129767 282129824 -63840 + (TA)n Simple_repeat Simple_repeat 1 58 0 214 314 52 35 chr1 282131222 282131394 -62270 - MIR SINE MIR -10 252 78 209 357 25 22 chr1 282132320 282132508 -61156 - MIR SINE MIR -58 204 19 238 287 128 21 chr1 282132729 282132823 -60841 - L2 LINE L2 -13 3300 3197 2000 137 7 3 chr1 282133927 282134226 -59438 + AluSq SINE Alu 1 300 -13 23 68 0 0 chr1 282134300 282134344 -59320 + AT_rich Low_complexity Low_complexity 1 44 0 688 332 88 23 chr1 282134574 282135040 -58624 - L2 LINE L2 -38 3275 2781 236 379 74 0 chr1 282135489 282135679 -57985 - L2 LINE L2 -883 2431 2228 23 0 0 0 chr1 282136138 282136161 -57503 + AT_rich Low_complexity Low_complexity 1 23 0 29 70 0 0 chr1 282136306 282136363 -57301 + AT_rich Low_complexity Low_complexity 1 57 0 800 275 19 10 chr1 282136464 282136671 -56993 + MLT1-int LTR MaLR 962 1170 -201 1808 295 65 22 chr1 282136752 282138238 -55426 + L1MA8 LINE L1 12 1101 -4854 1097 271 56 3 chr1 282138345 282138953 -54711 + L1MA8 LINE L1 1135 5980 -108 265 151 0 0 chr1 282139060 282139113 -54551 - LTR3b LTR ERVK -383 54 2 2771 200 43 78 chr1 282139182 282140446 -53218 - HERVK3 LTR ERVK -500 5445 1321 589 245 100 10 chr1 282140580 282140780 -52884 - HERVK3 LTR ERVK -6971 272 55 2606 134 12 15 chr1 282140974 282141438 -52226 - LTR3b LTR ERVK 0 500 1 999 173 118 4 chr1 282141439 282141693 -51971 - L1MB4 LINE L1 -247 5933 5651 180 77 0 0 chr1 282142058 282142084 -51580 + (TAGA)n Simple_repeat Simple_repeat 2 27 0 313 315 55 55 chr1 282142105 282142324 -51340 + L1ME3A LINE L1 4629 4847 -1299 1033 308 170 46 chr1 282142343 282143514 -50150 - L2 LINE L2 -5 3308 2007 341 301 18 18 chr1 282144092 282144255 -49409 + L1ME3A LINE L1 5258 5420 -744 490 278 98 19 chr1 282144259 282144576 -49088 + L1ME3A LINE L1 5621 5962 -208 1963 134 134 18 chr1 282144590 282144971 -48693 - MSTA LTR MaLR -1 427 3 746 218 58 45 chr1 282145069 282145404 -48260 - LTR35 LTR ERV1 0 676 351 691 232 85 107 chr1 282145782 282146529 -47135 + L1M2 LINE L1 812 1513 -4520 * 1370 215 27 12 chr1 282146514 282146849 -46815 + L1MA8 LINE L1 5816 6155 -136 833 110 0 0 chr1 282146856 282146965 -46699 + AluSg/x SINE Alu 192 300 -9 956 219 49 39 chr1 282146970 282147276 -46388 + L1M2 LINE L1 3399 3707 -2327 2298 127 43 69 chr1 282147276 282147739 -45925 - MER4C LTR ERV1 0 465 15 5265 212 86 12 chr1 282147740 282149430 -44234 + L1M2 LINE L1 3697 5524 -676 25 0 0 0 chr1 282149448 282149473 -44191 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr1 282153136 282153164 -40500 + (A)n Simple_repeat Simple_repeat 1 28 0 2388 173 40 19 chr1 282153943 282154424 -39240 + MER4D LTR ERV1 1 491 -412 1109 191 21 13 chr1 282154800 282155036 -38628 + MER2 DNA MER2_type 1 238 -107 3426 214 49 9 chr1 282155036 282155917 -37747 + L1MA2 LINE L1 17 1106 -6459 5615 174 39 21 chr1 282155932 282155996 -37668 + L1MA2 LINE L1 5522 5583 -2140 387 0 0 0 chr1 282155996 282156039 -37625 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 405 0 0 0 chr1 282156038 282156083 -37581 + (CA)n Simple_repeat Simple_repeat 2 46 0 5615 174 39 21 chr1 282156039 282158180 -35484 + L1MA2 LINE L1 5583 7722 -1 215 348 84 32 chr1 282159110 282159265 -34399 + L2 LINE L2 3115 3277 -36 1677 185 0 24 chr1 282159783 282160075 -33589 - AluJo SINE Alu -25 287 3 488 186 0 8 chr1 282160089 282160100 -33564 + (TA)n Simple_repeat Simple_repeat 2 12 -112 2449 87 34 0 chr1 282160100 282160458 -33206 - L1PB1 LINE L1 0 6151 5782 488 186 0 8 chr1 282160458 282160570 -33094 + (TA)n Simple_repeat Simple_repeat 12 124 0 8996 192 43 7 chr1 282160589 282163284 -30380 - L1PB1 LINE L1 -361 5790 3003 1227 171 26 4 chr1 282163280 282163508 -30156 + L1MA7 LINE L1 5608 5840 -451 * 262 206 62 0 chr1 282163526 282163623 -30041 + (TA)n Simple_repeat Simple_repeat 1 103 0 610 157 105 6 chr1 282163623 282163795 -29869 + L1MA7 LINE L1 6100 6288 -3 311 289 68 18 chr1 282163918 282164299 -29365 - L1MEc LINE L1 -2995 3220 2630 5235 212 113 24 chr1 282164325 282166150 -27514 + L1MA9 LINE L1 2879 4867 -1279 3756 184 42 37 chr1 282166140 282167184 -26480 + L1MA9 LINE L1 5185 6230 -82 * 311 255 90 55 chr1 282167499 282167545 -26119 - L1MEc LINE L1 -4092 2304 2261 523 100 0 0 chr1 282167545 282167625 -26039 - L1MA4A LINE L1 -7 6296 6217 311 255 90 55 chr1 282167625 282167723 -25941 - L1MEc LINE L1 -4135 2261 2155 1424 174 102 4 chr1 282168171 282168436 -25228 + AluSx SINE Alu 1 291 -21 1749 192 0 3 chr1 282168563 282168865 -24799 - AluJo SINE Alu -11 301 1 1027 204 98 49 chr1 282169158 282169486 -24178 + MER2 DNA MER2_type 1 344 0 2122 119 3 10 chr1 282169870 282170173 -23491 + AluSx SINE Alu 1 301 -11 186 191 0 0 chr1 282170815 282170862 -22802 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr1 282170965 282170987 -22677 + AT_rich Low_complexity Low_complexity 1 22 0 281 280 93 19 chr1 282173082 282173189 -20475 - MIR SINE MIR -60 148 34 505 338 93 15 chr1 282173728 282174071 -19593 + L3 LINE CR1 1020 1389 -188 254 389 64 0 chr1 282174853 282175010 -18654 - MIR SINE MIR -70 192 26 240 239 15 0 chr1 282175394 282175461 -18203 + (TA)n Simple_repeat Simple_repeat 1 68 0 210 202 24 12 chr1 282176601 282176685 -16979 + (TA)n Simple_repeat Simple_repeat 2 86 0 193 349 138 7 chr1 282176909 282177061 -16603 + MIR SINE MIR 41 212 -50 313 179 260 49 chr1 282179273 282179396 -14268 + MER21A LTR ERV1 17 165 -766 2263 227 33 103 chr1 282179403 282180130 -13534 + MER21A LTR ERV1 104 779 -152 399 227 30 13 chr1 282180708 282180843 -12821 + MER21A LTR ERV1 733 905 -1 289 259 24 24 chr1 282181808 282181893 -11771 - L2 LINE L2 -68 3245 3161 235 318 0 0 chr1 282181951 282182017 -11647 + L1ME3A LINE L1 5592 5657 -513 2065 173 56 38 chr1 282182022 282182468 -11196 + MSTB2 LTR MaLR 4 457 0 5338 237 56 56 chr1 282182468 282184119 -9545 + MSTB2-int LTR MaLR 1 1651 0 2002 186 45 40 chr1 282184119 282184566 -9098 + MSTB2 LTR MaLR 1 449 -8 306 219 191 0 chr1 282184696 282184801 -8863 + L1ME3A LINE L1 5857 5981 -189 660 336 145 33 chr1 282184992 282185632 -8032 - L2 LINE L2 -215 3098 2394 670 190 8 0 chr1 282185739 282185860 -7804 + AluJb SINE Alu 185 306 -6 4549 30 7 0 chr1 282186096 282186639 -7025 + L1PA4 LINE L1 5608 6154 -1 480 337 191 14 chr1 282186755 282187319 -6345 - L2 LINE L2 -946 2368 1705 485 187 29 0 chr1 282187319 282187458 -6206 + (TA)n Simple_repeat Simple_repeat 2 144 0 4378 162 58 45 chr1 282187460 282188351 -5313 - MER4D LTR ERV1 0 903 1 2963 202 40 69 chr1 282188354 282189197 -4467 - MER4D-int LTR ERV1 0 6758 5940 420 200 125 31 chr1 282189201 282189361 -4303 - MER4D-int LTR ERV1 -1366 4965 4791 350 214 14 0 chr1 282189508 282189578 -4086 - MER4D-int LTR ERV1 -4167 3953 3883 1819 176 179 77 chr1 282189604 282190281 -3383 + LTR1B LTR ERV1 1 746 -80 837 200 59 32 chr1 282190663 282191085 -2579 - LOR1-int LTR ERV1 -2148 4183 3728 2770 195 84 3 chr1 282191175 282191779 -1885 + MER39B LTR ERV1 1 653 0 1045 153 27 137 chr1 282191783 282192025 -1639 - LOR1-int LTR ERV1 -2903 3695 3428 2345 107 0 0 chr1 282192025 282192334 -1330 - AluY SINE Alu -2 309 1 1045 153 27 137 chr1 282192334 282192462 -1202 - LOR1-int LTR ERV1 -3170 3428 3287 847 114 14 14 chr1 282192462 282192602 -1062 - L1PA15 LINE L1 -6 6159 6020 1045 153 27 137 chr1 282192602 282192690 -974 - LOR1-int LTR ERV1 -3311 3287 2248 2327 168 77 0 chr1 282192693 282193110 -554 - LTR47A LTR ERVL 0 452 4 1228 202 140 20 chr1 282193140 282193658 -6 - LOR1-int LTR ERV1 -534 4346 1503